At1g01010	chr1:000003760	0.0	W/3760-3913,3996-4276,4486-4605,4706-5095,5174-5326,5439-5630	AT1G01010.1  CDS  gene_syn ANAC001, Arabidopsis NAC domain containing protein 1, T25K16.1, T25K16_1  gene ANAC001  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ANAC001 (Arabidopsis NAC domain containing protein 1); transcription factor  note Arabidopsis NAC domain containing protein 1 (ANAC001); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac069 (Arabidopsis NAC domain containing protein 69); transcription factor (TAIR:AT4G01550.1); Has 1331 Blast hits to 1329 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1331; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01010.1p  transcript_id AT1G01010.1  protein_id AT1G01010.1p  transcript_id AT1G01010.1  
At1g01020	chr1:000008571	0.0	C/8571-8666,8417-8464,8236-8325,7942-7987,7762-7835,7564-7649,7315-7450	AT1G01020.2  CDS  gene_syn ARV1, T25K16.2, T25K16_2  gene ARV1  go_component endoplasmic reticulum|GO:0005783|16725371|IDA  go_component membrane|GO:0016020||ISS  go_process sphingolipid metabolic process|GO:0006665|16725371|IMP  go_process sterol metabolic process|GO:0016125|16725371|IMP  go_function molecular_function|GO:0003674||ND  product ARV1  note ARV1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: sterol metabolic process, sphingolipid metabolic process; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: male gametophyte; EXPRESSED DURING: seedling growth, fertilized ovule stage; CONTAINS InterPro DOMAIN/s: Arv1-like protein (InterPro:IPR007290); BEST Arabidopsis thaliana protein match is: ARV2 (TAIR:AT4G01510.1); Has 215 Blast hits to 215 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 97; Fungi - 72; Plants - 18; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT1G01020.2p  transcript_id AT1G01020.2  protein_id AT1G01020.2p  transcript_id AT1G01020.2  
At1g01020	chr1:000008571	0.0	C/8571-8666,8417-8464,8236-8325,7942-7987,7762-7835,7564-7649,7384-7450,7157-7232,6915-7069	AT1G01020.1  CDS  gene_syn ARV1, T25K16.2, T25K16_2  gene ARV1  go_component endoplasmic reticulum|GO:0005783|16725371|IDA  go_component membrane|GO:0016020||ISS  go_process sphingolipid metabolic process|GO:0006665|16725371|IMP  go_process sterol metabolic process|GO:0016125|16725371|IMP  go_function molecular_function|GO:0003674||ND  product ARV1  note ARV1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: sterol metabolic process, sphingolipid metabolic process; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: male gametophyte; EXPRESSED DURING: seedling growth, fertilized ovule stage; CONTAINS InterPro DOMAIN/s: Arv1-like protein (InterPro:IPR007290); BEST Arabidopsis thaliana protein match is: ARV2 (TAIR:AT4G01510.1); Has 218 Blast hits to 218 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 98; Fungi - 72; Plants - 18; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G01020.1p  transcript_id AT1G01020.1  protein_id AT1G01020.1p  transcript_id AT1G01020.1  
At1g01030	chr1:000011864	0.0	C/11864-12940	AT1G01030.1  CDS  gene_syn NGA3, NGATHA3, T25K16.3, T25K16_3  gene NGA3  go_component cellular_component|GO:0005575||ND  go_process flower development|GO:0009908|16603651|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process leaf development|GO:0048366|16603651|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product NGA3 (NGATHA3); transcription factor  note NGATHA3 (NGA3); FUNCTIONS IN: transcription factor activity; INVOLVED IN: flower development, leaf development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: NGA1 (NGATHA1); transcription factor (TAIR:AT2G46870.1); Has 730 Blast hits to 729 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 730; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01030.1p  transcript_id AT1G01030.1  protein_id AT1G01030.1p  transcript_id AT1G01030.1  
At1g01040	chr1:000023519	0.0	W/23519-24451,24542-24655,24752-24962,25041-25435,25524-25743,25825-25997,26081-26203,26292-26452,26543-26776,26862-27012,27099-27281,27372-27533,27618-27713,27803-28431,28708-28805,28890-29080,29160-30065,30147-30311,30410-30816,30902-31079	AT1G01040.1  CDS  gene_syn ABNORMAL SUSPENSOR 1, ASU1, ATDCL1, CAF, CARPEL FACTORY, DCL1, DICER-LIKE 1, EMB60, EMB76, EMBRYO DEFECTIVE 60, EMBRYO DEFECTIVE 76, SHORT INTEGUMENTS 1, SIN1, SUS1, SUSPENSOR 1, T25K16.4, T25K16_4  gene DCL1  function Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state, others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs.  go_component nucleus|GO:0005634|15821876|IDA  go_component nucleus|GO:0005634|17369351|IDA  go_component nuclear dicing body|GO:0010445|17442570|IDA  go_process cytokinesis|GO:0000910|10556049|IMP  go_process RNA processing|GO:0006396|12225663|ISS  go_process virus induced gene silencing|GO:0009616|17090584|IMP  go_process embryonic pattern specification|GO:0009880|8787738|IMP  go_process flower development|GO:0009908|8787738|TAS  go_process suspensor development|GO:0010098||IMP  go_process vegetative to reproductive phase transition|GO:0010228|8787738|IMP  go_process RNA interference, production of ta-siRNAs|GO:0010267|16699516|IMP  go_process RNA interference, production of lsiRNA|GO:0010599|18003861|IMP  go_process RNA interference, production of siRNA|GO:0030422|17558406|IMP  go_process primary microRNA processing|GO:0031053|16144699|TAS  go_process gene silencing by miRNA, production of miRNAs|GO:0035196|16810317|IGI  go_process gene silencing by miRNA, mRNA cleavage|GO:0035279|15851028|IMP  go_function double-stranded RNA binding|GO:0003725|15821876|IDA  go_function ribonuclease III activity|GO:0004525||ISS  go_function protein binding|GO:0005515|15821876|IPI  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DCL1 (DICER-LIKE 1); ATP-dependent helicase/ double-stranded RNA binding / protein binding / ribonuclease III  note DICER-LIKE 1 (DCL1); FUNCTIONS IN: double-stranded RNA binding, protein binding, ribonuclease III activity, ATP-dependent helicase activity; INVOLVED IN: in 13 processes; LOCATED IN: nuclear dicing body, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Double-stranded RNA binding (InterPro:IPR001159), Argonaute and Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Dicer double-stranded RNA-binding fold (InterPro:IPR005034), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ribonuclease III family protein (TAIR:AT3G43920.3); Has 14621 Blast hits to 11644 proteins in 1716 species: Archae - 229; Bacteria - 6287; Metazoa - 2944; Fungi - 1156; Plants - 663; Viruses - 45; Other Eukaryotes - 3297 (source: NCBI BLink).  protein_id AT1G01040.1p  transcript_id AT1G01040.1  protein_id AT1G01040.1p  transcript_id AT1G01040.1  
At1g01046	chr1:000028500	0.0	W/28500-28706	AT1G01046.1  miRNA  gene_syn MICRORNA838A, MIR838A  gene MIR838A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUUUCUUCUACUUCUUGCACA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR838A (MICRORNA838A); miRNA  transcript_id AT1G01046.1  
At1g01050	chr1:000032547	0.0	C/32547-32670,32431-32459,32282-32347,32088-32195,31933-31998,31693-31813,31521-31602,31382-31424	AT1G01050.1  CDS  gene_syn Arabidopsis thaliana pyrophosphorylase 1, AtPPa1, T25K16.5, T25K16_5  gene AtPPa1  function Encodes a soluble protein with inorganic pyrophosphatase activity that is highly specific for Mg-inorganic pyrophosphate.  go_process phosphate metabolic process|GO:0006796||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component membrane|GO:0016020||ISS  go_process metabolic process|GO:0008152||ISS  go_function inorganic diphosphatase activity|GO:0004427||IDA  product AtPPa1 (Arabidopsis thaliana pyrophosphorylase 1); inorganic diphosphatase  note Arabidopsis thaliana pyrophosphorylase 1 (AtPPa1); FUNCTIONS IN: inorganic diphosphatase activity; INVOLVED IN: phosphate metabolic process, metabolic process; LOCATED IN: nucleus, membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Inorganic pyrophosphatase (InterPro:IPR008162); BEST Arabidopsis thaliana protein match is: AtPPa3 (Arabidopsis thaliana pyrophosphorylase 3); inorganic diphosphatase/ pyrophosphatase (TAIR:AT2G46860.1); Has 4131 Blast hits to 4131 proteins in 1146 species: Archae - 108; Bacteria - 2770; Metazoa - 199; Fungi - 190; Plants - 181; Viruses - 0; Other Eukaryotes - 683 (source: NCBI BLink).  protein_id AT1G01050.1p  transcript_id AT1G01050.1  protein_id AT1G01050.1p  transcript_id AT1G01050.1  
At1g01060	chr1:000037023	0.0	C/37023-37061,36810-36921,36624-36685,35730-35963,35567-35647,34401-35471,33992-34327	AT1G01060.4  CDS  gene_syn LATE ELONGATED HYPOCOTYL, LATE ELONGATED HYPOCOTYL 1, LHY, LHY1, T25K16.6, T25K16_6  gene LHY  function LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process regulation of circadian rhythm|GO:0042752|12007421|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_process long-day photoperiodism, flowering|GO:0048574|19011118|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9657154|ISS  product LHY (LATE ELONGATED HYPOCOTYL); DNA binding / transcription factor  note LATE ELONGATED HYPOCOTYL (LHY); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 11 processes; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: CCA1 (CIRCADIAN CLOCK ASSOCIATED 1); DNA binding / transcription activator/ transcription factor/ transcription repressor (TAIR:AT2G46830.1); Has 1924 Blast hits to 1432 proteins in 206 species: Archae - 2; Bacteria - 186; Metazoa - 258; Fungi - 143; Plants - 656; Viruses - 30; Other Eukaryotes - 649 (source: NCBI BLink).  protein_id AT1G01060.4p  transcript_id AT1G01060.4  protein_id AT1G01060.4p  transcript_id AT1G01060.4  
At1g01060	chr1:000037023	0.0	C/37023-37061,36810-36921,36624-36685,35730-35963,35567-35647,34401-35474,33992-34327	AT1G01060.1  CDS  gene_syn LATE ELONGATED HYPOCOTYL, LATE ELONGATED HYPOCOTYL 1, LHY, LHY1, T25K16.6, T25K16_6  gene LHY  function LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process regulation of circadian rhythm|GO:0042752|12007421|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_process long-day photoperiodism, flowering|GO:0048574|19011118|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9657154|ISS  product LHY (LATE ELONGATED HYPOCOTYL); DNA binding / transcription factor  note LATE ELONGATED HYPOCOTYL (LHY); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 11 processes; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: CCA1 (CIRCADIAN CLOCK ASSOCIATED 1); DNA binding / transcription activator/ transcription factor/ transcription repressor (TAIR:AT2G46830.1); Has 1820 Blast hits to 1407 proteins in 207 species: Archae - 2; Bacteria - 191; Metazoa - 253; Fungi - 135; Plants - 657; Viruses - 29; Other Eukaryotes - 553 (source: NCBI BLink).  protein_id AT1G01060.1p  transcript_id AT1G01060.1  protein_id AT1G01060.1p  transcript_id AT1G01060.1  
At1g01060	chr1:000037023	0.0	C/37023-37061,36810-36921,36624-36685,35730-35963,35567-35647,34401-35474,33992-34327	AT1G01060.2  CDS  gene_syn LATE ELONGATED HYPOCOTYL, LATE ELONGATED HYPOCOTYL 1, LHY, LHY1, T25K16.6, T25K16_6  gene LHY  function LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process regulation of circadian rhythm|GO:0042752|12007421|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_process long-day photoperiodism, flowering|GO:0048574|19011118|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9657154|ISS  product LHY (LATE ELONGATED HYPOCOTYL); DNA binding / transcription factor  note LATE ELONGATED HYPOCOTYL (LHY); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 11 processes; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: CCA1 (CIRCADIAN CLOCK ASSOCIATED 1); DNA binding / transcription activator/ transcription factor/ transcription repressor (TAIR:AT2G46830.1); Has 1820 Blast hits to 1407 proteins in 207 species: Archae - 2; Bacteria - 191; Metazoa - 253; Fungi - 135; Plants - 657; Viruses - 29; Other Eukaryotes - 553 (source: NCBI BLink).  protein_id AT1G01060.2p  transcript_id AT1G01060.2  protein_id AT1G01060.2p  transcript_id AT1G01060.2  
At1g01060	chr1:000037023	0.0	C/37023-37061,36810-36921,36624-36685,35730-35963,35567-35647,34401-35474,33992-34327	AT1G01060.3  CDS  gene_syn LATE ELONGATED HYPOCOTYL, LATE ELONGATED HYPOCOTYL 1, LHY, LHY1, T25K16.6, T25K16_6  gene LHY  function LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process regulation of circadian rhythm|GO:0042752|12007421|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_process long-day photoperiodism, flowering|GO:0048574|19011118|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9657154|ISS  product LHY (LATE ELONGATED HYPOCOTYL); DNA binding / transcription factor  note LATE ELONGATED HYPOCOTYL (LHY); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 11 processes; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: CCA1 (CIRCADIAN CLOCK ASSOCIATED 1); DNA binding / transcription activator/ transcription factor/ transcription repressor (TAIR:AT2G46830.1); Has 1820 Blast hits to 1407 proteins in 207 species: Archae - 2; Bacteria - 191; Metazoa - 253; Fungi - 135; Plants - 657; Viruses - 29; Other Eukaryotes - 553 (source: NCBI BLink).  protein_id AT1G01060.3p  transcript_id AT1G01060.3  protein_id AT1G01060.3p  transcript_id AT1G01060.3  
At1g01070	chr1:000040473	0.0	C/40473-40597,40213-40329,39409-39814,39136-39287,38898-39054	AT1G01070.2  CDS  gene_syn T25K16.7, T25K16_7  go_component membrane|GO:0016020||IEA  product nodulin MtN21 family protein  note nodulin MtN21 family protein; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT1G11450.2); Has 1106 Blast hits to 1099 proteins in 165 species: Archae - 10; Bacteria - 379; Metazoa - 4; Fungi - 6; Plants - 619; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT1G01070.2p  transcript_id AT1G01070.2  protein_id AT1G01070.2p  transcript_id AT1G01070.2  
At1g01070	chr1:000040675	0.0	C/40675-40877,40473-40535,40213-40329,39409-39814,39136-39287,38898-39054	AT1G01070.1  CDS  gene_syn T25K16.7, T25K16_7  go_component membrane|GO:0016020||IEA  product nodulin MtN21 family protein  note nodulin MtN21 family protein; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT1G11460.1); Has 1705 Blast hits to 1692 proteins in 315 species: Archae - 18; Bacteria - 780; Metazoa - 4; Fungi - 6; Plants - 641; Viruses - 0; Other Eukaryotes - 256 (source: NCBI BLink).  protein_id AT1G01070.1p  transcript_id AT1G01070.1  protein_id AT1G01070.1p  transcript_id AT1G01070.1  
At1g01073	chr1:000044677	0.0	W/44677-44787	AT1G01073.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system.  protein_id AT1G01073.1p  transcript_id AT1G01073.1  protein_id AT1G01073.1p  transcript_id AT1G01073.1  
At1g01080	chr1:000046373	0.0	C/46373-46789,46044-46145,45646-45954,45503-45559	AT1G01080.2  CDS  gene_syn T25K16.19, T25K16_19  go_component chloroplast|GO:0009507|18431481|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative  note 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: CP33; RNA binding (TAIR:AT3G52380.1); Has 17909 Blast hits to 11804 proteins in 598 species: Archae - 16; Bacteria - 1315; Metazoa - 10536; Fungi - 1741; Plants - 2530; Viruses - 0; Other Eukaryotes - 1771 (source: NCBI BLink).  protein_id AT1G01080.2p  transcript_id AT1G01080.2  protein_id AT1G01080.2p  transcript_id AT1G01080.2  
At1g01080	chr1:000046376	0.0	C/46376-46789,46044-46145,45646-45954,45503-45559	AT1G01080.1  CDS  gene_syn T25K16.19, T25K16_19  go_component nucleus|GO:0005634|14617066|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative  note 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, nucleus, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative (TAIR:AT5G50250.1); Has 19434 Blast hits to 12572 proteins in 610 species: Archae - 14; Bacteria - 1626; Metazoa - 10959; Fungi - 1964; Plants - 2851; Viruses - 0; Other Eukaryotes - 2020 (source: NCBI BLink).  protein_id AT1G01080.1p  transcript_id AT1G01080.1  protein_id AT1G01080.1p  transcript_id AT1G01080.1  
At1g01090	chr1:000048936	0.0	C/48936-49166,48075-48852,47705-47982	AT1G01090.1  CDS  gene_syn PDH-E1 ALPHA, PYRUVATE DEHYDROGENASE E1 ALPHA, T25K16.8, T25K16_8  gene PDH-E1 ALPHA  function pyruvate dehydrogenase E1 alpha subunit  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process glycolysis|GO:0006096||IEA  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_component plastid|GO:0009536|9393637|ISS  go_process metabolic process|GO:0008152||ISS  go_function pyruvate dehydrogenase (acetyl-transferring) activity|GO:0004739|9393637|ISS  go_function pyruvate dehydrogenase (acetyl-transferring) activity|GO:0004739||ISS  product PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA); pyruvate dehydrogenase (acetyl-transferring)  note PYRUVATE DEHYDROGENASE E1 ALPHA (PDH-E1 ALPHA); FUNCTIONS IN: pyruvate dehydrogenase (acetyl-transferring) activity; INVOLVED IN: oxidation reduction, glycolysis, metabolic process; LOCATED IN: chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrogenase, E1 component (InterPro:IPR001017), Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y (InterPro:IPR017597); BEST Arabidopsis thaliana protein match is: AT-E1 ALPHA; oxidoreductase, acting on the aldehyde or oxo group of donors, disulfide as acceptor / pyruvate dehydrogenase (acetyl-transferring) (TAIR:AT1G59900.1); Has 6672 Blast hits to 6670 proteins in 1055 species: Archae - 51; Bacteria - 3109; Metazoa - 469; Fungi - 156; Plants - 117; Viruses - 0; Other Eukaryotes - 2770 (source: NCBI BLink).  protein_id AT1G01090.1p  transcript_id AT1G01090.1  protein_id AT1G01090.1p  transcript_id AT1G01090.1  
At1g01100	chr1:000050883	0.0	C/50883-50954,50419-50631,50284-50337	AT1G01100.1  CDS  gene_syn T25K16.9, T25K16_9  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_process translational elongation|GO:0006414||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic ribosome|GO:0022626|17934214|IDA  go_process translational elongation|GO:0006414||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S acidic ribosomal protein P1 (RPP1A)  note 60S acidic ribosomal protein P1 (RPP1A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P1 (RPP1C) (TAIR:AT5G47700.2); Has 1664 Blast hits to 1663 proteins in 290 species: Archae - 48; Bacteria - 0; Metazoa - 686; Fungi - 343; Plants - 315; Viruses - 0; Other Eukaryotes - 272 (source: NCBI BLink).  protein_id AT1G01100.1p  transcript_id AT1G01100.1  protein_id AT1G01100.1p  transcript_id AT1G01100.1  
At1g01100	chr1:000050883	0.0	C/50883-50954,50419-50631,50284-50337	AT1G01100.2  CDS  gene_syn T25K16.9, T25K16_9  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_process translational elongation|GO:0006414||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic ribosome|GO:0022626|17934214|IDA  go_process translational elongation|GO:0006414||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S acidic ribosomal protein P1 (RPP1A)  note 60S acidic ribosomal protein P1 (RPP1A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P1 (RPP1C) (TAIR:AT5G47700.2); Has 1664 Blast hits to 1663 proteins in 290 species: Archae - 48; Bacteria - 0; Metazoa - 686; Fungi - 343; Plants - 315; Viruses - 0; Other Eukaryotes - 272 (source: NCBI BLink).  protein_id AT1G01100.2p  transcript_id AT1G01100.2  protein_id AT1G01100.2p  transcript_id AT1G01100.2  
At1g01100	chr1:000050883	0.0	C/50883-50954,50419-50631,50284-50337	AT1G01100.4  CDS  gene_syn T25K16.9, T25K16_9  go_component plasma membrane|GO:0005886|17317660|IDA  go_process translational elongation|GO:0006414||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic ribosome|GO:0022626|17934214|IDA  go_process translational elongation|GO:0006414||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S acidic ribosomal protein P1 (RPP1A)  note 60S acidic ribosomal protein P1 (RPP1A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P1 (RPP1C) (TAIR:AT5G47700.2); Has 1664 Blast hits to 1663 proteins in 290 species: Archae - 48; Bacteria - 0; Metazoa - 686; Fungi - 343; Plants - 315; Viruses - 0; Other Eukaryotes - 272 (source: NCBI BLink).  protein_id AT1G01100.4p  transcript_id AT1G01100.4  protein_id AT1G01100.4p  transcript_id AT1G01100.4  
At1g01100	chr1:000050883	0.0	C/50883-50954,50496-50631,50419-50447,50284-50337	AT1G01100.3  CDS  gene_syn T25K16.9, T25K16_9  go_component plasma membrane|GO:0005886|17317660|IDA  go_process translational elongation|GO:0006414||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic ribosome|GO:0022626|17934214|IDA  go_process translational elongation|GO:0006414||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S acidic ribosomal protein P1 (RPP1A)  note 60S acidic ribosomal protein P1 (RPP1A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P1 (RPP1C) (TAIR:AT5G47700.2); Has 1119 Blast hits to 1119 proteins in 234 species: Archae - 1; Bacteria - 0; Metazoa - 430; Fungi - 289; Plants - 234; Viruses - 0; Other Eukaryotes - 165 (source: NCBI BLink).  protein_id AT1G01100.3p  transcript_id AT1G01100.3  protein_id AT1G01100.3p  transcript_id AT1G01100.3  
At1g01110	chr1:000052239	0.0	W/52239-52346,52434-52730,52938-53183,53484-53624,53703-54494	AT1G01110.2  CDS  gene_syn IQ-domain 18, IQD18, T25K16.10, T25K16_10  gene IQD18  go_function molecular_function|GO:0003674||ND  product IQD18 (IQ-domain 18)  note IQ-domain 18 (IQD18); FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: iqd17 (IQ-domain 17); calmodulin binding (TAIR:AT4G00820.1); Has 1105 Blast hits to 644 proteins in 73 species: Archae - 0; Bacteria - 11; Metazoa - 159; Fungi - 31; Plants - 454; Viruses - 5; Other Eukaryotes - 445 (source: NCBI BLink).  protein_id AT1G01110.2p  transcript_id AT1G01110.2  protein_id AT1G01110.2p  transcript_id AT1G01110.2  
At1g01110	chr1:000053022	0.0	W/53022-53183,53484-53624,53703-54494	AT1G01110.1  CDS  gene_syn IQ-domain 18, IQD18, T25K16.10, T25K16_10  gene IQD18  go_component mitochondrion|GO:0005739||IEA  go_function molecular_function|GO:0003674||ND  product IQD18 (IQ-domain 18)  note IQ-domain 18 (IQD18); FUNCTIONS IN: molecular_function unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: iqd17 (IQ-domain 17); calmodulin binding (TAIR:AT4G00820.1); Has 864 Blast hits to 431 proteins in 46 species: Archae - 0; Bacteria - 10; Metazoa - 112; Fungi - 16; Plants - 278; Viruses - 4; Other Eukaryotes - 444 (source: NCBI BLink).  protein_id AT1G01110.1p  transcript_id AT1G01110.1  protein_id AT1G01110.1p  transcript_id AT1G01110.1  
At1g01115	chr1:000056624	0.0	W/56624-56740	AT1G01115.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system.  protein_id AT1G01115.1p  transcript_id AT1G01115.1  protein_id AT1G01115.1p  transcript_id AT1G01115.1  
At1g01120	chr1:000057392	0.0	C/57392-58978	AT1G01120.1  CDS  gene_syn 3-KETOACYL-COA SYNTHASE 1, KCS1, T25K16.11, T25K16_11  gene KCS1  function Encodes a condensing enzyme KCS1 (3-ketoacyl-CoA synthase 1) which is involved in the critical fatty acid elongation process in wax biosynthesis.  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component endoplasmic reticulum|GO:0005783|18465198|IDA  go_component membrane|GO:0016020|10074711|ISS  go_process very-long-chain fatty acid metabolic process|GO:0000038|10074711|IDA  go_process response to osmotic stress|GO:0006970|18465198|IEP  go_process response to cold|GO:0009409|18465198|IEP  go_process response to light stimulus|GO:0009416|18465198|IEP  go_process wax biosynthetic process|GO:0010025|10074711|IDA  go_process wax biosynthetic process|GO:0010025|10074711|IMP  go_process fatty acid elongation|GO:0030497|10074711|IDA  go_process cuticle development|GO:0042335|10074711|IMP  go_function acyltransferase activity|GO:0008415||ISS  go_function fatty acid elongase activity|GO:0009922|10074711|IDA  product KCS1 (3-KETOACYL-COA SYNTHASE 1); acyltransferase/ fatty acid elongase  note 3-KETOACYL-COA SYNTHASE 1 (KCS1); FUNCTIONS IN: fatty acid elongase activity, acyltransferase activity; INVOLVED IN: in 7 processes; LOCATED IN: cytosolic ribosome, endoplasmic reticulum, membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038), Chalcone and stilbene synthases, C-terminal (InterPro:IPR012328); BEST Arabidopsis thaliana protein match is: KCS11 (3-KETOACYL-COA SYNTHASE 11); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups (TAIR:AT2G26640.1); Has 2729 Blast hits to 2723 proteins in 680 species: Archae - 0; Bacteria - 860; Metazoa - 0; Fungi - 5; Plants - 1724; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink).  protein_id AT1G01120.1p  transcript_id AT1G01120.1  protein_id AT1G01120.1p  transcript_id AT1G01120.1  
At1g01130	chr1:000063431	0.0	C/63431-63811,61963-62124	AT1G01130.1  CDS  gene_syn F6F3.33  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47170.1); Has 104 Blast hits to 104 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01130.1p  transcript_id AT1G01130.1  protein_id AT1G01130.1p  transcript_id AT1G01130.1  
At1g01140	chr1:000067324	0.0	C/67324-67512,66835-66897,66678-66749,66450-66557,66262-66342,66107-66160,65733-65864,65563-65652,65331-65456,65110-65217,64901-65017,64751-64807,64582-64656,64398-64475	AT1G01140.2  CDS  gene_syn CBL-INTERACTING PROTEIN KINASE 9, CIPK9, F6F3.28, PKS6, PROTEIN KINASE 6, SNF1-RELATED PROTEIN KINASE 3.12, SnRK3.12  gene CIPK9  function Encodes a CBL-interacting protein kinase with similarity to SOS2  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product CIPK9 (CBL-INTERACTING PROTEIN KINASE 9); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note CBL-INTERACTING PROTEIN KINASE 9 (CIPK9); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: signal transduction, protein amino acid phosphorylation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CIPK23 (CBL-INTERACTING PROTEIN KINASE 23); kinase/ protein binding / protein serine/threonine kinase (TAIR:AT1G30270.1); Has 95087 Blast hits to 93593 proteins in 3050 species: Archae - 70; Bacteria - 8658; Metazoa - 41038; Fungi - 8663; Plants - 18026; Viruses - 477; Other Eukaryotes - 18155 (source: NCBI BLink).  protein_id AT1G01140.2p  transcript_id AT1G01140.2  protein_id AT1G01140.2p  transcript_id AT1G01140.2  
At1g01140	chr1:000067324	0.0	C/67324-67512,66835-66897,66678-66749,66450-66557,66262-66342,66107-66160,65739-65864,65563-65652,65331-65456,65110-65217,64901-65017,64751-64807,64570-64656,64398-64475	AT1G01140.3  CDS  gene_syn CBL-INTERACTING PROTEIN KINASE 9, CIPK9, F6F3.28, PKS6, PROTEIN KINASE 6, SNF1-RELATED PROTEIN KINASE 3.12, SnRK3.12  gene CIPK9  function Encodes a CBL-interacting protein kinase with similarity to SOS2  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product CIPK9 (CBL-INTERACTING PROTEIN KINASE 9); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note CBL-INTERACTING PROTEIN KINASE 9 (CIPK9); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: signal transduction, protein amino acid phosphorylation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CIPK23 (CBL-INTERACTING PROTEIN KINASE 23); kinase/ protein binding / protein serine/threonine kinase (TAIR:AT1G30270.1); Has 95177 Blast hits to 93611 proteins in 3054 species: Archae - 70; Bacteria - 8657; Metazoa - 41054; Fungi - 8702; Plants - 18053; Viruses - 477; Other Eukaryotes - 18164 (source: NCBI BLink).  protein_id AT1G01140.3p  transcript_id AT1G01140.3  protein_id AT1G01140.3p  transcript_id AT1G01140.3  
At1g01140	chr1:000067324	0.0	C/67324-67512,66835-66897,66678-66749,66450-66557,66262-66342,66107-66160,65739-65864,65563-65652,65331-65456,65110-65217,64901-65017,64751-64807,64582-64656,64398-64475	AT1G01140.1  CDS  gene_syn CBL-INTERACTING PROTEIN KINASE 9, CIPK9, F6F3.28, PKS6, PROTEIN KINASE 6, SNF1-RELATED PROTEIN KINASE 3.12, SnRK3.12  gene CIPK9  function Encodes a CBL-interacting protein kinase with similarity to SOS2  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product CIPK9 (CBL-INTERACTING PROTEIN KINASE 9); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note CBL-INTERACTING PROTEIN KINASE 9 (CIPK9); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: signal transduction, protein amino acid phosphorylation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CIPK23 (CBL-INTERACTING PROTEIN KINASE 23); kinase/ protein binding / protein serine/threonine kinase (TAIR:AT1G30270.1); Has 95174 Blast hits to 93608 proteins in 3054 species: Archae - 70; Bacteria - 8657; Metazoa - 41048; Fungi - 8702; Plants - 18054; Viruses - 477; Other Eukaryotes - 18166 (source: NCBI BLink).  protein_id AT1G01140.1p  transcript_id AT1G01140.1  protein_id AT1G01140.1p  transcript_id AT1G01140.1  
At1g01150	chr1:000071942	0.0	C/71942-71998,71041-71721,70840-70968,70115-70285	AT1G01150.1  CDS  gene_syn F6F3.30  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product DNA binding / protein binding / zinc ion binding  note DNA binding / protein binding / zinc ion binding; FUNCTIONS IN: protein binding, DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: TRFL10 (TRF-LIKE 10); DNA binding (TAIR:AT5G03780.1); Has 49 Blast hits to 44 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G01150.1p  transcript_id AT1G01150.1  protein_id AT1G01150.1p  transcript_id AT1G01150.1  
At1g01160	chr1:000072583	0.0	W/72583-72669,72915-73016,73087-73163,73287-73395,73488-73740,73822-73883	AT1G01160.2  CDS  gene_syn F6F3.29, GIF2, GRF1-INTERACTING FACTOR 2  gene GIF2  function Arabidopsis thaliana GRF1-interacting factor 2 (GIF2) mRNA  go_component nucleus|GO:0005634|15326298|ISS  go_process biological_process|GO:0008150||ND  go_function transcription coactivator activity|GO:0003713|12974814|ISS  go_function protein binding|GO:0005515|15326298|IPI  product SSXT protein-related / transcription co-activator-related  note GRF1-INTERACTING FACTOR 2 (GIF2); FUNCTIONS IN: transcription coactivator activity, protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SSXT (InterPro:IPR007726); BEST Arabidopsis thaliana protein match is: GIF3 (GRF1-INTERACTING FACTOR 3); protein binding / transcription coactivator (TAIR:AT4G00850.1).  protein_id AT1G01160.2p  transcript_id AT1G01160.2  protein_id AT1G01160.2p  transcript_id AT1G01160.2  
At1g01160	chr1:000072583	0.0	W/72583-72669,73087-73163,73287-73395,73488-73740,73822-73883	AT1G01160.1  CDS  gene_syn F6F3.29, GIF2, GRF1-INTERACTING FACTOR 2  gene GIF2  function Arabidopsis thaliana GRF1-interacting factor 2 (GIF2) mRNA  go_component nucleus|GO:0005634|15326298|ISS  go_process biological_process|GO:0008150||ND  go_function transcription coactivator activity|GO:0003713|12974814|ISS  go_function protein binding|GO:0005515|15326298|IPI  product SSXT protein-related / transcription co-activator-related  note GRF1-INTERACTING FACTOR 2 (GIF2); FUNCTIONS IN: transcription coactivator activity, protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SSXT (InterPro:IPR007726); BEST Arabidopsis thaliana protein match is: GIF3 (GRF1-INTERACTING FACTOR 3); protein binding / transcription coactivator (TAIR:AT4G00850.1); Has 334 Blast hits to 334 proteins in 67 species: Archae - 0; Bacteria - 4; Metazoa - 245; Fungi - 17; Plants - 53; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G01160.1p  transcript_id AT1G01160.1  protein_id AT1G01160.1p  transcript_id AT1G01160.1  
At1g01170	chr1:000074338	0.0	C/74338-74443,74105-74250	AT1G01170.1  CDS  gene_syn F6F3.32  go_component mitochondrion|GO:0005739|15276431|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to stress|GO:0006950||ISS  go_function molecular_function|GO:0003674||ND  product ozone-responsive stress-related protein, putative  note ozone-responsive stress-related protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: mitochondrion, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1138 (InterPro:IPR009515); BEST Arabidopsis thaliana protein match is: ATOZI1 (TAIR:AT4G00860.1); Has 61 Blast hits to 61 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01170.1p  transcript_id AT1G01170.1  protein_id AT1G01170.1p  transcript_id AT1G01170.1  
At1g01170	chr1:000074338	0.0	C/74338-74443,74105-74250	AT1G01170.2  CDS  gene_syn F6F3.32  go_component membrane|GO:0016020|17432890|IDA  go_process response to stress|GO:0006950||ISS  go_function molecular_function|GO:0003674||ND  product ozone-responsive stress-related protein, putative  note ozone-responsive stress-related protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1138 (InterPro:IPR009515); BEST Arabidopsis thaliana protein match is: ATOZI1 (TAIR:AT4G00860.1); Has 61 Blast hits to 61 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01170.2p  transcript_id AT1G01170.2  protein_id AT1G01170.2p  transcript_id AT1G01170.2  
At1g01180	chr1:000075633	0.0	W/75633-76547,76814-76951,77031-77280,77313-77446	AT1G01180.1  CDS  gene_syn F6F3.5  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell, hypocotyl; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19270.1); Has 228 Blast hits to 228 proteins in 32 species: Archae - 0; Bacteria - 48; Metazoa - 2; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink).  protein_id AT1G01180.1p  transcript_id AT1G01180.1  protein_id AT1G01180.1p  transcript_id AT1G01180.1  
At1g01183	chr1:000078932	0.0	C/78932-79032	AT1G01183.1  miRNA  gene_syn MICRORNA 165, MICRORNA 165A, MIR165, MIR165A  gene MIR165A  function Encodes a microRNA that targets several HD-ZIPIII family members including PHV, PHB, REV, ATHB-8, and ATHB-15. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCGGACCAGGCUUCAUCCCC  go_component cellular_component|GO:0005575||ND  go_process gene silencing by miRNA|GO:0035195|15200956|TAS  go_function molecular_function|GO:0003674||ND  product MIR165A (MICRORNA 165A); miRNA  transcript_id AT1G01183.1  
At1g01190	chr1:000083884	0.0	C/83884-84864,83045-83671	AT1G01190.1  CDS  gene_syn CYP78A8, CYTOCHROME P450, FAMILY 78, SUBFAMILY A, POLYPEPTIDE 8, F6F3.25  gene CYP78A8  function member of CYP78A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP78A8; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP78A8; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.10 ten leaves visible, LP.02 two leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP78A6; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT2G46660.1); Has 22842 Blast hits to 22770 proteins in 1258 species: Archae - 21; Bacteria - 2127; Metazoa - 10175; Fungi - 4205; Plants - 5481; Viruses - 3; Other Eukaryotes - 830 (source: NCBI BLink).  protein_id AT1G01190.1p  transcript_id AT1G01190.1  protein_id AT1G01190.1p  transcript_id AT1G01190.1  
At1g01200	chr1:000087880	0.0	C/87880-88145,86715-87162	AT1G01200.1  CDS  gene_syn ARABIDOPSIS RAB GTPASE HOMOLOG A3, ATRAB-A3, ATRABA3, F6F3.1, F6F3_1  gene ATRABA3  go_component nucleus|GO:0005634|14617066|IDA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_component endosome|GO:0005768|18239134|IDA  go_component cell plate|GO:0009504|18239134|IDA  go_function GTP binding|GO:0005525||ISS  product ATRABA3 (ARABIDOPSIS RAB GTPASE HOMOLOG A3); GTP binding  note ARABIDOPSIS RAB GTPASE HOMOLOG A3 (ATRABA3); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: endosome, nucleus, cell plate; EXPRESSED IN: lateral root cap, hypocotyl, flower, root, epidermis; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: ATRABA4C; GTP binding (TAIR:AT5G47960.1); Has 21819 Blast hits to 21794 proteins in 608 species: Archae - 15; Bacteria - 95; Metazoa - 12212; Fungi - 2576; Plants - 2001; Viruses - 19; Other Eukaryotes - 4901 (source: NCBI BLink).  protein_id AT1G01200.1p  transcript_id AT1G01200.1  protein_id AT1G01200.1p  transcript_id AT1G01200.1  
At1g01210	chr1:000088977	0.0	W/88977-89081,89173-89263,89405-89529	AT1G01210.1  CDS  gene_syn F6F3.2, F6F3_2  go_process transcription|GO:0006350||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function transcription regulator activity|GO:0030528||IEA  go_component nucleus|GO:0005634||ISS  go_process RNA elongation|GO:0006354||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product DNA-directed RNA polymerase III family protein  note DNA-directed RNA polymerase III family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: RNA elongation, regulation of transcription, DNA-dependent, transcription, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Zinc finger, TFIIS-type (InterPro:IPR001222), DNA-directed RNA polymerase, M/15 kDa subunit (InterPro:IPR001529); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase III family protein (TAIR:AT4G07950.1); Has 790 Blast hits to 790 proteins in 227 species: Archae - 146; Bacteria - 0; Metazoa - 227; Fungi - 178; Plants - 60; Viruses - 0; Other Eukaryotes - 179 (source: NCBI BLink).  protein_id AT1G01210.1p  transcript_id AT1G01210.1  protein_id AT1G01210.1p  transcript_id AT1G01210.1  
At1g01220	chr1:000091750	0.0	W/91750-92070,92270-92501,92569-92933,93045-93171,93271-94281,94357-95075,95160-95552	AT1G01220.1  CDS  gene_syn F6F3.3, F6F3_3  go_component cytoplasm|GO:0005737||IEA  go_process metabolic process|GO:0008152||IEA  go_process phosphorylation|GO:0016310||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||IEA  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_function galactokinase activity|GO:0004335||ISS  go_function ATP binding|GO:0005524||ISS  product GHMP kinase-related  note GHMP kinase-related; FUNCTIONS IN: kinase activity, phosphotransferase activity, alcohol group as acceptor, galactokinase activity, ATP binding; INVOLVED IN: metabolic process, phosphorylation; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mevalonate and galactokinase (InterPro:IPR006206), GHMP kinase (InterPro:IPR006204), L-fucokinase (InterPro:IPR012887), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721), GHMP kinase, C-terminal (InterPro:IPR013750); Has 1240 Blast hits to 1200 proteins in 265 species: Archae - 44; Bacteria - 390; Metazoa - 134; Fungi - 1; Plants - 33; Viruses - 3; Other Eukaryotes - 635 (source: NCBI BLink).  protein_id AT1G01220.1p  transcript_id AT1G01220.1  protein_id AT1G01220.1p  transcript_id AT1G01220.1  
At1g01225	chr1:000096064	0.0	W/96064-96157,96554-97242	AT1G01225.1  CDS  go_component cellular_component|GO:0005575||ND  product NC domain-containing protein-related  note NC domain-containing protein-related; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NC (InterPro:IPR007053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00905.1); Has 90 Blast hits to 89 proteins in 22 species: Archae - 0; Bacteria - 19; Metazoa - 3; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G01225.1p  transcript_id AT1G01225.1  protein_id AT1G01225.1p  transcript_id AT1G01225.1  
At1g01230	chr1:000097620	0.0	W/97620-97805,98457-98605,98908-99046	AT1G01230.1  CDS  gene_syn F6F3.4, F6F3_4  go_component integral to membrane|GO:0016021||IEA  go_component endoplasmic reticulum|GO:0005783||ISS  go_process protein folding|GO:0006457||ISS  go_function molecular_function|GO:0003674||ND  product ORMDL family protein  note ORMDL family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding; LOCATED IN: integral to membrane, endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ORMDL (InterPro:IPR007203); BEST Arabidopsis thaliana protein match is: ORMDL family protein (TAIR:AT5G42000.1); Has 398 Blast hits to 398 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 233; Fungi - 101; Plants - 52; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G01230.1p  transcript_id AT1G01230.1  protein_id AT1G01230.1p  transcript_id AT1G01230.1  
At1g01240	chr1:000100683	0.0	W/100683-101678	AT1G01240.1  CDS  gene_syn F633.5, F633_5, F6F3.27  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  product unknown protein  note unknown protein; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46550.1); Has 70 Blast hits to 55 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 11; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G01240.1p  transcript_id AT1G01240.1  protein_id AT1G01240.1p  transcript_id AT1G01240.1  
At1g01240	chr1:000100683	0.0	W/100683-101678	AT1G01240.2  CDS  gene_syn F633.5, F633_5, F6F3.27  product unknown protein  note unknown protein; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46550.1); Has 70 Blast hits to 55 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 11; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G01240.2p  transcript_id AT1G01240.2  protein_id AT1G01240.2p  transcript_id AT1G01240.2  
At1g01240	chr1:000100683	0.0	W/100683-101678	AT1G01240.3  CDS  gene_syn F633.5, F633_5, F6F3.27  product unknown protein  note unknown protein; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46550.1); Has 70 Blast hits to 55 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 11; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G01240.3p  transcript_id AT1G01240.3  protein_id AT1G01240.3p  transcript_id AT1G01240.3  
At1g01250	chr1:000104731	0.0	C/104731-105309	AT1G01250.1  CDS  gene_syn F6F3.6, F6F3_6  function encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: tny (TINY); DNA binding / transcription factor (TAIR:AT5G25810.1); Has 3550 Blast hits to 3523 proteins in 186 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3546; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G01250.1p  transcript_id AT1G01250.1  protein_id AT1G01250.1p  transcript_id AT1G01250.1  
At1g01260	chr1:000109595	0.0	W/109595-111367	AT1G01260.1  CDS  gene_syn F6F3.7, F6F3_7  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: ATAIB (ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR); DNA binding / transcription factor (TAIR:AT2G46510.1); Has 2098 Blast hits to 1892 proteins in 178 species: Archae - 0; Bacteria - 2; Metazoa - 163; Fungi - 52; Plants - 1843; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT1G01260.1p  transcript_id AT1G01260.1  protein_id AT1G01260.1p  transcript_id AT1G01260.1  
At1g01260	chr1:000109595	0.0	W/109595-111367	AT1G01260.2  CDS  gene_syn F6F3.7, F6F3_7  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: ATAIB (ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR); DNA binding / transcription factor (TAIR:AT2G46510.1); Has 2098 Blast hits to 1892 proteins in 178 species: Archae - 0; Bacteria - 2; Metazoa - 163; Fungi - 52; Plants - 1843; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT1G01260.2p  transcript_id AT1G01260.2  protein_id AT1G01260.2p  transcript_id AT1G01260.2  
At1g01270	chr1:000111890	0.0	C/111890-111961	AT1G01270.1  tRNA  gene_syn 51947.TRNA-GLN-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gln (anticodon: CTG)  transcript_id AT1G01270.1  
At1g01280	chr1:000112290	0.0	W/112290-113195,113279-113905	AT1G01280.1  CDS  gene_syn CYP703, CYP703A2, CYTOCHROME P450, FAMILY 703, SUBFAMILY A, POLYPEPTIDE 2, F6F3.8, F6F3_8  gene CYP703A2  function member of CYP703A CYP703A2 is expressed specifically in anthers of land plants, catalyzing the in-chain hydroxylation at the C-7 position of medium-chain saturated fatty acids (lauric acid in-chain hydroxylase) which is involved in pollen development (sporopollenin synthesis).  go_component endomembrane system|GO:0012505||IEA  go_process pollen wall assembly|GO:0010208|17496121|IMP  go_process pollen exine formation|GO:0010584||IMP  go_process medium-chain fatty acid metabolic process|GO:0051791|17496121|IDA  go_process medium-chain fatty acid biosynthetic process|GO:0051792|17496121|IDA  go_process sporopollenin biosynthetic process|GO:0080110|17496121|IMP  go_process sporopollenin biosynthetic process|GO:0080110|17496121|TAS  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen|GO:0016709|17496121|IDA  go_function oxygen binding|GO:0019825||ISS  product CYP703A2 (CYTOCHROME P450, FAMILY 703, SUBFAMILY A, POLYPEPTIDE 2); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen / oxygen binding  note CYTOCHROME P450, FAMILY 703, SUBFAMILY A, POLYPEPTIDE 2 (CYP703A2); FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, oxygen binding; INVOLVED IN: medium-chain fatty acid metabolic process, pollen wall assembly, medium-chain fatty acid biosynthetic process, sporopollenin biosynthetic process, pollen exine formation; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: TT7 (TRANSPARENT TESTA 7); flavonoid 3 -monooxygenase/ oxygen binding (TAIR:AT5G07990.1); Has 21024 Blast hits to 20849 proteins in 1166 species: Archae - 19; Bacteria - 1465; Metazoa - 9664; Fungi - 3771; Plants - 5489; Viruses - 3; Other Eukaryotes - 613 (source: NCBI BLink).  protein_id AT1G01280.1p  transcript_id AT1G01280.1  protein_id AT1G01280.1p  transcript_id AT1G01280.1  
At1g01290	chr1:000114299	0.0	W/114299-114433,114619-115296	AT1G01290.1  CDS  gene_syn CNX3, COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3, F6F3.9, F6F3_9  gene CNX3  function COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3. Encodes a protein involved in molybdenum cofactor biosynthesis. Homologous to E.coli MoaC. Expression is low in all tissues examined, except in roots. Appears to have targeting signals for chloroplast or mitochondria  go_component mitochondrion|GO:0005739|7890743|ISS  go_component chloroplast|GO:0009507|7890743|ISS  go_process Mo-molybdopterin cofactor biosynthetic process|GO:0006777|7890743|IGI  go_function catalytic activity|GO:0003824|7890743|IGI  product CNX3 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3); catalytic  note COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3 (CNX3); FUNCTIONS IN: catalytic activity; INVOLVED IN: Mo-molybdopterin cofactor biosynthetic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molybdopterin cofactor biosynthesis MoaC region (InterPro:IPR002820); Has 3379 Blast hits to 3377 proteins in 1079 species: Archae - 134; Bacteria - 1966; Metazoa - 88; Fungi - 44; Plants - 19; Viruses - 0; Other Eukaryotes - 1128 (source: NCBI BLink).  protein_id AT1G01290.1p  transcript_id AT1G01290.1  protein_id AT1G01290.1p  transcript_id AT1G01290.1  
At1g01290	chr1:000114299	0.0	W/114299-114433,114619-115296	AT1G01290.2  CDS  gene_syn CNX3, COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3, F6F3.9, F6F3_9  gene CNX3  function COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3. Encodes a protein involved in molybdenum cofactor biosynthesis. Homologous to E.coli MoaC. Expression is low in all tissues examined, except in roots. Appears to have targeting signals for chloroplast or mitochondria  go_component mitochondrion|GO:0005739|7890743|ISS  go_component chloroplast|GO:0009507|7890743|ISS  go_process Mo-molybdopterin cofactor biosynthetic process|GO:0006777|7890743|IGI  go_function catalytic activity|GO:0003824|7890743|IGI  product CNX3 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3); catalytic  note COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3 (CNX3); FUNCTIONS IN: catalytic activity; INVOLVED IN: Mo-molybdopterin cofactor biosynthetic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molybdopterin cofactor biosynthesis MoaC region (InterPro:IPR002820).  protein_id AT1G01290.2p  transcript_id AT1G01290.2  protein_id AT1G01290.2p  transcript_id AT1G01290.2  
At1g01300	chr1:000117065	0.0	W/117065-118522	AT1G01300.1  CDS  gene_syn F6F3.10, F6F3_10  go_component membrane|GO:0016020|17432890|IDA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: membrane, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT3G61820.1); Has 2689 Blast hits to 2664 proteins in 261 species: Archae - 0; Bacteria - 0; Metazoa - 929; Fungi - 434; Plants - 1177; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT1G01300.1p  transcript_id AT1G01300.1  protein_id AT1G01300.1p  transcript_id AT1G01300.1  
At1g01305	chr1:000119429	0.0	W/119429-119854	AT1G01305.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01305.1p  transcript_id AT1G01305.1  protein_id AT1G01305.1p  transcript_id AT1G01305.1  
At1g01310	chr1:000120221	0.0	W/120221-120946	AT1G01310.1  CDS  gene_syn F6F3.11, F6F3_11  go_component extracellular region|GO:0005576||IEA  go_component extracellular region|GO:0005576||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product allergen V5/Tpx-1-related family protein  note allergen V5/Tpx-1-related family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: extracellular region; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related, conserved site (InterPro:IPR018244), Allergen V5/Tpx-1 related (InterPro:IPR001283), Ves allergen (InterPro:IPR002413), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: pathogenesis-related protein, putative (TAIR:AT4G25780.1); Has 2222 Blast hits to 2131 proteins in 282 species: Archae - 0; Bacteria - 50; Metazoa - 1302; Fungi - 220; Plants - 597; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT1G01310.1p  transcript_id AT1G01310.1  protein_id AT1G01310.1p  transcript_id AT1G01310.1  
At1g01320	chr1:000130039	0.0	C/130039-130099,129853-129914,128968-129060,128479-128551,128028-128312,127868-127935,127651-127782,127532-127573,126935-127453,126686-126840,126076-126589,125936-125998,125742-125843,125329-125655,125134-125226,124921-125046,124714-124818,124499-124632,124211-124394,123992-124123,123785-123897,123579-123669,121582-123501	AT1G01320.1  CDS  gene_syn F6F3.12, F6F3_12  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  product tetratricopeptide repeat (TPR)-containing protein  note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT4G28080.1); Has 10077 Blast hits to 4062 proteins in 343 species: Archae - 100; Bacteria - 2124; Metazoa - 5307; Fungi - 1095; Plants - 343; Viruses - 76; Other Eukaryotes - 1032 (source: NCBI BLink).  protein_id AT1G01320.1p  transcript_id AT1G01320.1  protein_id AT1G01320.1p  transcript_id AT1G01320.1  
At1g01340	chr1:000134582	0.0	C/134582-135118,134289-134501,133911-134206,133641-133752,133303-133539,132824-133218,132414-132744	AT1G01340.1  CDS  gene_syn ACBK1, ATCNGC10, CNGC10, CYCLIC NUCLEOTIDE GATED CHANNEL 10, F6F3.13, F6F3_13  gene ATCNGC10  function member of Cyclic nucleotide gated channel family  go_component membrane|GO:0016020||IEA  go_process ion transport|GO:0006811||IEA  go_function ion channel activity|GO:0005216||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function calmodulin binding|GO:0005516||ISS  go_function cyclic nucleotide binding|GO:0030551||ISS  product ATCNGC10 (CYCLIC NUCLEOTIDE GATED CHANNEL 10); calmodulin binding / cyclic nucleotide binding / ion channel  note CYCLIC NUCLEOTIDE GATED CHANNEL 10 (ATCNGC10); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: ATCNGC13; calmodulin binding / cyclic nucleotide binding / ion channel (TAIR:AT4G01010.1); Has 2588 Blast hits to 2484 proteins in 207 species: Archae - 0; Bacteria - 25; Metazoa - 1284; Fungi - 23; Plants - 663; Viruses - 0; Other Eukaryotes - 593 (source: NCBI BLink).  protein_id AT1G01340.1p  transcript_id AT1G01340.1  protein_id AT1G01340.1p  transcript_id AT1G01340.1  
At1g01350	chr1:000136732	0.0	W/136732-136816,136935-137758,137848-137970	AT1G01350.1  CDS  gene_syn F6F3.14, F6F3.15, F6F3_14, F6F3_15  go_function nucleic acid binding|GO:0003676||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function nucleic acid binding|GO:0003676||ISS  product nucleic acid binding / protein binding / zinc ion binding  note nucleic acid binding / protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding, nucleic acid binding; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type/C3HC4-type RING finger) family protein (TAIR:AT5G06420.2); Has 684 Blast hits to 680 proteins in 163 species: Archae - 0; Bacteria - 2; Metazoa - 306; Fungi - 148; Plants - 91; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).  protein_id AT1G01350.1p  transcript_id AT1G01350.1  protein_id AT1G01350.1p  transcript_id AT1G01350.1  
At1g01355	chr1:000138513	0.0	W/138513-138541,138597-138778,138863-139114,139203-139345,139488-139568	AT1G01355.1  CDS  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35640.1); Has 79 Blast hits to 77 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01355.1p  transcript_id AT1G01355.1  protein_id AT1G01355.1p  transcript_id AT1G01355.1  
At1g01360	chr1:000142138	0.0	W/142138-142281,142424-142639,142711-142914	AT1G01360.1  CDS  gene_syn F6F3.16, F6F3_16  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01026.1); Has 183 Blast hits to 183 proteins in 19 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 181; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01360.1p  transcript_id AT1G01360.1  protein_id AT1G01360.1p  transcript_id AT1G01360.1  
At1g01370	chr1:000143773	0.0	W/143773-143824,143934-143977,144064-144109,144193-144227,144315-144351,144447-144559,144927-145004,145132-145207,145345-145400	AT1G01370.1  CDS  gene_syn CENH3, CENTROMERIC HISTONE H3, F6F3.17, F6F3_17, HTR12  gene HTR12  function Encodes a centromere-identifying protein histone H3 variant. Localized at centromeres in both mitotic and meiotic cells.  go_function DNA binding|GO:0003677||IEA  go_component chromosome, centromeric region|GO:0000775|12034896|IDA  go_component nucleus|GO:0005634|17555967|IEP  go_process double fertilization forming a zygote and endosperm|GO:0009567|17555967|IEP  go_function DNA binding|GO:0003677||ISS  product HTR12; DNA binding  note HTR12; FUNCTIONS IN: DNA binding; INVOLVED IN: double fertilization forming a zygote and endosperm; LOCATED IN: chromosome, centromeric region, nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H3 (TAIR:AT5G10980.1); Has 10019 Blast hits to 10016 proteins in 5222 species: Archae - 0; Bacteria - 0; Metazoa - 7266; Fungi - 1295; Plants - 989; Viruses - 0; Other Eukaryotes - 469 (source: NCBI BLink).  protein_id AT1G01370.1p  transcript_id AT1G01370.1  protein_id AT1G01370.1p  transcript_id AT1G01370.1  
At1g01370	chr1:000143773	0.0	W/143773-143824,143934-143977,144064-144109,144193-144227,144315-144351,144447-144559,144927-145004,145132-145207,145345-145400	AT1G01370.2  CDS  gene_syn CENH3, CENTROMERIC HISTONE H3, F6F3.17, F6F3_17, HTR12  gene HTR12  function Encodes a centromere-identifying protein histone H3 variant. Localized at centromeres in both mitotic and meiotic cells.  go_function DNA binding|GO:0003677||IEA  go_component chromosome, centromeric region|GO:0000775|12034896|IDA  go_component nucleus|GO:0005634|17555967|IEP  go_process double fertilization forming a zygote and endosperm|GO:0009567|17555967|IEP  go_function DNA binding|GO:0003677||ISS  product HTR12; DNA binding  note HTR12; FUNCTIONS IN: DNA binding; INVOLVED IN: double fertilization forming a zygote and endosperm; LOCATED IN: chromosome, centromeric region, nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H3 (TAIR:AT5G10980.1); Has 10019 Blast hits to 10016 proteins in 5222 species: Archae - 0; Bacteria - 0; Metazoa - 7266; Fungi - 1295; Plants - 989; Viruses - 0; Other Eukaryotes - 469 (source: NCBI BLink).  protein_id AT1G01370.2p  transcript_id AT1G01370.2  protein_id AT1G01370.2p  transcript_id AT1G01370.2  
At1g01380	chr1:000147267	0.0	W/147267-147333,147452-147539,147644-147740	AT1G01380.1  CDS  gene_syn ENHANCER OF TRY AND CPC 1, ETC1, F6F3.18, F6F3_18  gene ETC1  function ETC1 is involved in trichome and root hair patterning in Arabidopsis.  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product ETC1 (ENHANCER OF TRY AND CPC 1); DNA binding / transcription factor  note ENHANCER OF TRY AND CPC 1 (ETC1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; EXPRESSED IN: shoot apex, hypocotyl, root; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: CPL3 (CAPRICE-LIKE MYB3); DNA binding / transcription factor (TAIR:AT4G01060.3); Has 1345 Blast hits to 1345 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1333; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G01380.1p  transcript_id AT1G01380.1  protein_id AT1G01380.1p  transcript_id AT1G01380.1  
At1g01390	chr1:000148319	0.0	C/148319-149761	AT1G01390.1  CDS  gene_syn F6F3.19, F6F3_19  go_process metabolic process|GO:0008152||IEA  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT72B3 (UDP-GLUCOSYL TRANSFERASE 72B3); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT1G01420.1); Has 5002 Blast hits to 4975 proteins in 294 species: Archae - 0; Bacteria - 113; Metazoa - 2124; Fungi - 19; Plants - 2672; Viruses - 46; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT1G01390.1p  transcript_id AT1G01390.1  protein_id AT1G01390.1p  transcript_id AT1G01390.1  
At1g01400	chr1:000152086	0.0	C/152086-152149,151932-152002,151393-151731,151158-151298	AT1G01400.1  CDS  gene_syn F6F3.20, F6F3_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 14 Blast hits to 14 proteins in 5 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G01400.1p  transcript_id AT1G01400.1  protein_id AT1G01400.1p  transcript_id AT1G01400.1  
At1g01410	chr1:000153113	0.0	W/153113-154198	AT1G01410.1  CDS  gene_syn APUM22, Arabidopsis Pumilio 22, F6F3.21, F6F3_21  gene APUM22  go_function RNA binding|GO:0003723||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product APUM22 (Arabidopsis Pumilio 22); RNA binding / binding  note Arabidopsis Pumilio 22 (APUM22); FUNCTIONS IN: RNA binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding region (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT5G64490.1); Has 197 Blast hits to 175 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 40; Plants - 107; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT1G01410.1p  transcript_id AT1G01410.1  protein_id AT1G01410.1p  transcript_id AT1G01410.1  
At1g01420	chr1:000154566	0.0	C/154566-156011	AT1G01420.1  CDS  gene_syn F6F3.22, F6F3_22, UDP-GLUCOSYL TRANSFERASE 72B3, UGT72B3  gene UGT72B3  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function quercetin 3-O-glucosyltransferase activity|GO:0080043|15352060|IDA  product UGT72B3 (UDP-GLUCOSYL TRANSFERASE 72B3); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring glycosyl groups  note UDP-GLUCOSYL TRANSFERASE 72B3 (UGT72B3); FUNCTIONS IN: quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT1G01390.1); Has 4951 Blast hits to 4925 proteins in 327 species: Archae - 0; Bacteria - 162; Metazoa - 1997; Fungi - 14; Plants - 2680; Viruses - 67; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT1G01420.1p  transcript_id AT1G01420.1  protein_id AT1G01420.1p  transcript_id AT1G01420.1  
At1g01430	chr1:000158254	0.0	C/158254-158536,157829-158112,156953-157756	AT1G01430.1  CDS  gene_syn F6F3.23, F6F3_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01080.1); Has 706 Blast hits to 695 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 702; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01430.1p  transcript_id AT1G01430.1  protein_id AT1G01430.1p  transcript_id AT1G01430.1  
At1g01440	chr1:000160568	0.0	C/160568-162219,160418-160478,160079-160302,159935-159992	AT1G01440.1  CDS  gene_syn F6F3.24, F6F3_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product extra-large G-protein-related  note extra-large G-protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: extra-large G-protein-related (TAIR:AT4G01090.1); Has 547 Blast hits to 507 proteins in 84 species: Archae - 0; Bacteria - 12; Metazoa - 214; Fungi - 50; Plants - 211; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT1G01440.1p  transcript_id AT1G01440.1  protein_id AT1G01440.1p  transcript_id AT1G01440.1  
At1g01448	chr1:000163419	0.0	W/163419-164576	AT1G01448.3  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G01450  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G01448.3  
At1g01448	chr1:000163431	0.0	W/163431-166239	AT1G01448.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G01450  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G01448.1  
At1g01448	chr1:000163432	0.0	W/163432-164687	AT1G01448.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G01450  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G01448.2  
At1g01450	chr1:000164105	0.0	C/164105-165517	AT1G01450.1  CDS  gene_syn F22L4.1, F22L4_1  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase-related  note protein kinase-related; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Protein of unknown function DUF1221 (InterPro:IPR010632), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G64300.2); Has 54362 Blast hits to 53835 proteins in 1482 species: Archae - 31; Bacteria - 4005; Metazoa - 25314; Fungi - 3795; Plants - 11255; Viruses - 185; Other Eukaryotes - 9777 (source: NCBI BLink).  protein_id AT1G01450.1p  transcript_id AT1G01450.1  protein_id AT1G01450.1p  transcript_id AT1G01450.1  
At1g01453	chr1:000166929	0.0	C/166929-167798	AT1G01453.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01110.1); Has 125 Blast hits to 124 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01453.2p  transcript_id AT1G01453.2  protein_id AT1G01453.2p  transcript_id AT1G01453.2  
At1g01453	chr1:000167014	0.0	C/167014-167798,166853-166871	AT1G01453.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01110.1); Has 125 Blast hits to 124 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01453.1p  transcript_id AT1G01453.1  protein_id AT1G01453.1p  transcript_id AT1G01453.1  
At1g01460	chr1:000169115	0.0	W/169115-169257,169347-169509,169600-169710,169806-169993,170071-170162,170266-170313,170412-170507,170622-170760,170851-171154	AT1G01460.1  CDS  gene_syn ATPIPK11, F22L4.2, F22L4_2, PIPK11  gene PIPK11  function Type I phosphatidylinositol-4-phosphate 5-kinase, subfamily A.  go_process phosphatidylinositol metabolic process|GO:0046488||IEA  go_function phosphatidylinositol phosphate kinase activity|GO:0016307||IEA  go_component cellular_component|GO:0005575||ND  go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308||ISS  product PIPK11; 1-phosphatidylinositol-4-phosphate 5-kinase/ phosphatidylinositol phosphate kinase  note PIPK11; FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity; INVOLVED IN: phosphatidylinositol metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, sepal, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: ATPIPK10 (Arabidopsis phosphatidylinositol phosphate kinase 10); 1-phosphatidylinositol-4-phosphate 5-kinase (TAIR:AT4G01190.1); Has 1603 Blast hits to 1205 proteins in 160 species: Archae - 0; Bacteria - 2; Metazoa - 875; Fungi - 219; Plants - 216; Viruses - 0; Other Eukaryotes - 291 (source: NCBI BLink).  protein_id AT1G01460.1p  transcript_id AT1G01460.1  protein_id AT1G01460.1p  transcript_id AT1G01460.1  
At1g01470	chr1:000172621	0.0	C/172621-172826,172295-172544	AT1G01470.1  CDS  gene_syn F22L4.3, F22L4_3, LATE EMBRYOGENESIS ABUNDANT 14, LEA14, LIGHT STRESS-REGULATED 3, LSR3  gene LEA14  function Encodes late-embryogenesis abundant protein whose mRNA levels are induced in response to wounding and light stress. Might be involved in protection against dessication.  go_component cellular_component|GO:0005575||ND  go_process response to desiccation|GO:0009269||ISS  go_process response to wounding|GO:0009611|12068110|IEP  go_process response to high light intensity|GO:0009644|11683875|IEP  go_process embryonic development ending in seed dormancy|GO:0009793||ISS  go_function molecular_function|GO:0003674||ND  product LEA14 (LATE EMBRYOGENESIS ABUNDANT 14)  note LATE EMBRYOGENESIS ABUNDANT 14 (LEA14); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy, response to high light intensity, response to desiccation, response to wounding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Water Stress and Hypersensitive response (InterPro:IPR013990), Late embryogenesis abundant protein 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: late embryogenesis abundant protein, putative / LEA protein, putative (TAIR:AT2G46140.1); Has 279 Blast hits to 279 proteins in 84 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 268; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G01470.1p  transcript_id AT1G01470.1  protein_id AT1G01470.1p  transcript_id AT1G01470.1  
At1g01471	chr1:000173251	0.0	W/173251-173466	AT1G01471.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G01471.1p  transcript_id AT1G01471.1  protein_id AT1G01471.1p  transcript_id AT1G01471.1  
At1g01480	chr1:000175862	0.0	W/175862-176032,176207-176338,176592-176752,177025-178051	AT1G01480.1  CDS  gene_syn 1-AMINO-CYCLOPROPANE-1-CARBOXYLATE SYNTHASE 2, 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE, ACS2, AT-ACC2, EC 4.4.1.14, F22L4.4, F22L4_4, S-ADENOSYL-L-METHIONINE METHYLTHIOADENOSINE-LYASE  gene ACS2  function a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family, isolated from a flower-specific cDNA library.  go_component cellular_component|GO:0005575||ND  go_process ethylene biosynthetic process|GO:0009693|1357670|TAS  go_process ethylene biosynthetic process|GO:0009693|1438312|TAS  go_process ethylene biosynthetic process|GO:0009693|16311726|TAS  go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847|12968022|IDA  go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847|8566772|IDA  product ACS2; 1-aminocyclopropane-1-carboxylate synthase  note ACS2; FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate synthase activity; INVOLVED IN: ethylene biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I and II (InterPro:IPR004839), 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: ACS1 (ACC SYNTHASE 1); 1-aminocyclopropane-1-carboxylate synthase (TAIR:AT3G61510.1); Has 18828 Blast hits to 18825 proteins in 1673 species: Archae - 546; Bacteria - 10697; Metazoa - 565; Fungi - 502; Plants - 940; Viruses - 0; Other Eukaryotes - 5578 (source: NCBI BLink).  protein_id AT1G01480.1p  transcript_id AT1G01480.1  protein_id AT1G01480.1p  transcript_id AT1G01480.1  
At1g01480	chr1:000176607	0.0	W/176607-176752,177025-178051	AT1G01480.2  CDS  gene_syn 1-AMINO-CYCLOPROPANE-1-CARBOXYLATE SYNTHASE 2, 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE, ACS2, AT-ACC2, EC 4.4.1.14, F22L4.4, F22L4_4, S-ADENOSYL-L-METHIONINE METHYLTHIOADENOSINE-LYASE  gene ACS2  function a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family, isolated from a flower-specific cDNA library.  go_component cellular_component|GO:0005575||ND  go_process ethylene biosynthetic process|GO:0009693|1357670|TAS  go_process ethylene biosynthetic process|GO:0009693|1438312|TAS  go_process ethylene biosynthetic process|GO:0009693|16311726|TAS  go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847|12968022|IDA  go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847|8566772|IDA  product ACS2; 1-aminocyclopropane-1-carboxylate synthase  note ACS2; FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate synthase activity; INVOLVED IN: ethylene biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase, class I and II (InterPro:IPR004839), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: ACS1 (ACC SYNTHASE 1); 1-aminocyclopropane-1-carboxylate synthase (TAIR:AT3G61510.1); Has 17664 Blast hits to 17662 proteins in 1665 species: Archae - 503; Bacteria - 9956; Metazoa - 547; Fungi - 495; Plants - 904; Viruses - 0; Other Eukaryotes - 5259 (source: NCBI BLink).  protein_id AT1G01480.2p  transcript_id AT1G01480.2  protein_id AT1G01480.2p  transcript_id AT1G01480.2  
At1g01490	chr1:000182061	0.0	C/182061-182066,181347-181422,180401-180852	AT1G01490.1  CDS  gene_syn F22L4.5, F22L4_5  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT5G23760.1); Has 7628 Blast hits to 3670 proteins in 294 species: Archae - 47; Bacteria - 686; Metazoa - 2844; Fungi - 342; Plants - 780; Viruses - 96; Other Eukaryotes - 2833 (source: NCBI BLink).  protein_id AT1G01490.1p  transcript_id AT1G01490.1  protein_id AT1G01490.1p  transcript_id AT1G01490.1  
At1g01490	chr1:000182061	0.0	C/182061-182066,181347-181422,180401-180852	AT1G01490.2  CDS  gene_syn F22L4.5, F22L4_5  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT5G23760.1); Has 7628 Blast hits to 3670 proteins in 294 species: Archae - 47; Bacteria - 686; Metazoa - 2844; Fungi - 342; Plants - 780; Viruses - 96; Other Eukaryotes - 2833 (source: NCBI BLink).  protein_id AT1G01490.2p  transcript_id AT1G01490.2  protein_id AT1G01490.2p  transcript_id AT1G01490.2  
At1g01500	chr1:000185260	0.0	W/185260-186009,186340-186573	AT1G01500.1  CDS  gene_syn F22L4.17, F22L4_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19400.2); Has 70 Blast hits to 69 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01500.1p  transcript_id AT1G01500.1  protein_id AT1G01500.1p  transcript_id AT1G01500.1  
At1g01510	chr1:000187235	0.0	W/187235-187822,188011-188176,188284-188414,188529-189320,189417-189464,189562-189675,189765-189836	AT1G01510.1  CDS  gene_syn AN, ANGUSTIFOLIA, F22L4.6, F22L4_6  gene AN  function Encodes a homolog of human CtBP. Mutant has longer and thicker leaves than wild type. Involved in controlling polar cell expansion in the leaf width direction.  go_component cellular_component|GO:0005575||ND  go_process microtubule cytoskeleton organization|GO:0000226|11889033|IMP  go_process leaf morphogenesis|GO:0009965|8625845|IMP  go_process monopolar cell growth|GO:0042814|8625845|IMP  go_function protein binding|GO:0005515|11889033|IPI  product AN (ANGUSTIFOLIA); protein binding  note ANGUSTIFOLIA (AN); FUNCTIONS IN: protein binding; INVOLVED IN: microtubule cytoskeleton organization, monopolar cell growth, leaf morphogenesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: HPR; glycerate dehydrogenase/ poly(U) binding (TAIR:AT1G68010.1); Has 13434 Blast hits to 13333 proteins in 1454 species: Archae - 234; Bacteria - 7377; Metazoa - 566; Fungi - 618; Plants - 303; Viruses - 5; Other Eukaryotes - 4331 (source: NCBI BLink).  protein_id AT1G01510.1p  transcript_id AT1G01510.1  protein_id AT1G01510.1p  transcript_id AT1G01510.1  
At1g01520	chr1:000190596	0.0	W/190596-190828,190941-190998,191138-191258,191341-191475,191579-191692,191780-191889,191967-192026,192107-192139	AT1G01520.1  CDS  gene_syn F22L4.18, F22L4_18  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to salt stress, regulation of transcription, DNA-dependent; EXPRESSED IN: stem, stamen; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT4G01280.1); Has 771 Blast hits to 767 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 44; Fungi - 0; Plants - 645; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT1G01520.1p  transcript_id AT1G01520.1  protein_id AT1G01520.1p  transcript_id AT1G01520.1  
At1g01530	chr1:000193351	0.0	C/193351-193662,192640-193071	AT1G01530.1  CDS  gene_syn AGAMOUS-LIKE 28, AGL28, F22L4.7, F22L4_7  gene AGL28  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product AGL28 (AGAMOUS-LIKE 28); DNA binding / transcription factor  note AGAMOUS-LIKE 28 (AGL28); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL23 (AGAMOUS-LIKE 23); DNA binding / transcription factor (TAIR:AT1G65360.1); Has 4255 Blast hits to 4254 proteins in 558 species: Archae - 0; Bacteria - 0; Metazoa - 553; Fungi - 206; Plants - 3438; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT1G01530.1p  transcript_id AT1G01530.1  protein_id AT1G01530.1p  transcript_id AT1G01530.1  
At1g01540	chr1:000195980	0.0	W/195980-196542,197115-197219,197300-197422,197501-197671,197775-197904,197974-198183,198267-198383	AT1G01540.2  CDS  gene_syn F22L4.8, F22L4_8  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT4G01330.1); Has 85830 Blast hits to 84796 proteins in 3163 species: Archae - 57; Bacteria - 8048; Metazoa - 37643; Fungi - 6516; Plants - 18556; Viruses - 420; Other Eukaryotes - 14590 (source: NCBI BLink).  protein_id AT1G01540.2p  transcript_id AT1G01540.2  protein_id AT1G01540.2p  transcript_id AT1G01540.2  
At1g01540	chr1:000195980	0.0	W/195980-196542,197115-197219,197300-197422,197501-197671,197775-197973	AT1G01540.1  CDS  gene_syn F22L4.8, F22L4_8  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT4G01330.1); Has 85516 Blast hits to 84503 proteins in 3152 species: Archae - 53; Bacteria - 8018; Metazoa - 37587; Fungi - 6480; Plants - 18471; Viruses - 410; Other Eukaryotes - 14497 (source: NCBI BLink).  protein_id AT1G01540.1p  transcript_id AT1G01540.1  protein_id AT1G01540.1p  transcript_id AT1G01540.1  
At1g01550	chr1:000200526	0.0	W/200526-201575	AT1G01550.1  CDS  gene_syn BPS1, BYPASS 1, F22L4.9, F22L4_9  gene BPS1  function BYPASS1, required to prevent constitutive production of a root-derived graft-transmissible signal  go_component plasma membrane|GO:0005886|17317660|IDA  go_function molecular_function|GO:0003674||ND  product BPS1 (BYPASS 1)  note BYPASS 1 (BPS1); FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46080.1); Has 97 Blast hits to 97 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G01550.1p  transcript_id AT1G01550.1  protein_id AT1G01550.1p  transcript_id AT1G01550.1  
At1g01550	chr1:000200526	0.0	W/200526-201575	AT1G01550.2  CDS  gene_syn BPS1, BYPASS 1, F22L4.9, F22L4_9  gene BPS1  function BYPASS1, required to prevent constitutive production of a root-derived graft-transmissible signal  go_component plasma membrane|GO:0005886|17317660|IDA  go_function molecular_function|GO:0003674||ND  product BPS1 (BYPASS 1)  note BYPASS 1 (BPS1); FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46080.1); Has 97 Blast hits to 97 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G01550.2p  transcript_id AT1G01550.2  protein_id AT1G01550.2p  transcript_id AT1G01550.2  
At1g01560	chr1:000202345	0.0	W/202345-202508,202782-202911,202991-203128,203267-203599,203760-203943,204029-204189	AT1G01560.2  CDS  gene_syn ARABIDOPSIS THALIANA MAP KINASE 11, ATMPK11, F22L4.10, F22L4_10  gene ATMPK11  function member of MAP Kinase  go_component cellular_component|GO:0005575||ND  go_process signal transduction|GO:0007165|12119167|IC  go_process response to abscisic acid stimulus|GO:0009737|16258012|IEP  go_function MAP kinase activity|GO:0004707|11544109|ISS  go_function MAP kinase activity|GO:0004707|12119167|ISS  go_function kinase activity|GO:0016301||ISS  product ATMPK11; MAP kinase/ kinase  note ATMPK11; FUNCTIONS IN: MAP kinase activity, kinase activity; INVOLVED IN: signal transduction, response to abscisic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), JNK MAP kinase (InterPro:IPR008351), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4); MAP kinase/ kinase (TAIR:AT4G01370.1); Has 89151 Blast hits to 88076 proteins in 3288 species: Archae - 43; Bacteria - 6810; Metazoa - 39877; Fungi - 8066; Plants - 17071; Viruses - 440; Other Eukaryotes - 16844 (source: NCBI BLink).  protein_id AT1G01560.2p  transcript_id AT1G01560.2  protein_id AT1G01560.2p  transcript_id AT1G01560.2  
At1g01560	chr1:000202345	0.0	W/202345-202508,202782-202911,202991-203128,203267-203662	AT1G01560.1  CDS  gene_syn ARABIDOPSIS THALIANA MAP KINASE 11, ATMPK11, F22L4.10, F22L4_10  gene ATMPK11  function member of MAP Kinase  go_component cellular_component|GO:0005575||ND  go_process signal transduction|GO:0007165|12119167|IC  go_process response to abscisic acid stimulus|GO:0009737|16258012|IEP  go_function MAP kinase activity|GO:0004707|11544109|ISS  go_function MAP kinase activity|GO:0004707|12119167|ISS  go_function kinase activity|GO:0016301||ISS  product ATMPK11; MAP kinase/ kinase  note ATMPK11; FUNCTIONS IN: MAP kinase activity, kinase activity; INVOLVED IN: signal transduction, response to abscisic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4); MAP kinase/ kinase (TAIR:AT4G01370.1); Has 88164 Blast hits to 87226 proteins in 3269 species: Archae - 39; Bacteria - 6753; Metazoa - 39481; Fungi - 7939; Plants - 16987; Viruses - 423; Other Eukaryotes - 16542 (source: NCBI BLink).  protein_id AT1G01560.1p  transcript_id AT1G01560.1  protein_id AT1G01560.1p  transcript_id AT1G01560.1  
At1g01570	chr1:000205176	0.0	W/205176-205949,206692-207243,207325-207435	AT1G01570.1  CDS  gene_syn F22L4.11, F22L4_11  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product fringe-related protein  note fringe-related protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: fringe-related protein (TAIR:AT4G00300.1); Has 358 Blast hits to 354 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 88; Fungi - 125; Plants - 136; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G01570.1p  transcript_id AT1G01570.1  protein_id AT1G01570.1p  transcript_id AT1G01570.1  
At1g01580	chr1:000209395	0.0	W/209395-209608,209764-209866,209950-210144,210385-210619,211052-211379,211474-211717,211855-212573,212671-212810	AT1G01580.1  CDS  gene_syn ATFRO2, F22L4.12, F22L4_12, FERRIC CHELATE REDUCTASE DEFECTIVE 1, FERRIC REDUCTION OXIDASE 2, FRD1, FRO2  gene FRO2  function Encodes the low-iron-inducible ferric chelate reductase responsible for reduction of iron at the root surface. It is likely to be the major Fe(III) chelate reductase in Arabidopsis iron metabolism. Coordinately regulated with IRT1, the major transporter responsible for high-affinity iron uptake from the soil, at both transcriptional and posttranscriptional levels. Steady state mRNA levels are regulated by several metals. Its transcription is regulated by FIT1.  go_component plasma membrane|GO:0005886|16813577|IDA  go_component membrane|GO:0016020||ISS  go_process response to bacterium|GO:0009617|19121106|IEP  go_process response to cytokinin stimulus|GO:0009735|18397377|IEP  go_process cellular response to iron ion starvation|GO:0010106|16813577|IEP  go_process iron chelate transport|GO:0015688|10067892|IMP  go_process iron ion homeostasis|GO:0055072|18697928|IMP  go_function ferric-chelate reductase activity|GO:0000293|10067892|IMP  go_function ferric-chelate reductase activity|GO:0000293|16006655|IDA  go_function ferric-chelate reductase activity|GO:0000293||ISS  product FRO2 (FERRIC REDUCTION OXIDASE 2); ferric-chelate reductase  note FERRIC REDUCTION OXIDASE 2 (FRO2); FUNCTIONS IN: ferric-chelate reductase activity; INVOLVED IN: cellular response to iron ion starvation, response to bacterium, iron ion homeostasis, response to cytokinin stimulus, iron chelate transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: flower, root; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Ferric reductase, NAD binding (InterPro:IPR013121), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130); BEST Arabidopsis thaliana protein match is: FRO1 (FERRIC REDUCTION OXIDASE 1); ferric-chelate reductase (TAIR:AT1G01590.1); Has 1751 Blast hits to 1751 proteins in 261 species: Archae - 3; Bacteria - 183; Metazoa - 466; Fungi - 743; Plants - 251; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT1G01580.1p  transcript_id AT1G01580.1  protein_id AT1G01580.1p  transcript_id AT1G01580.1  
At1g01590	chr1:000214229	0.0	W/214229-214406,214480-214582,214697-214897,215317-215554,215633-215960,216044-216293,216414-217090,217165-217304	AT1G01590.1  CDS  gene_syn ATFRO1, F22L4.13, F22L4_13, FERRIC REDUCTION OXIDASE 1, FRO1  gene FRO1  function Encodes a ferric-chelate reductase that is expressed at extremely low levels in Fe deficiency-induced seedlings.  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  go_function ferric-chelate reductase activity|GO:0000293|10067892|IMP  go_function ferric-chelate reductase activity|GO:0000293||ISS  product FRO1 (FERRIC REDUCTION OXIDASE 1); ferric-chelate reductase  note FERRIC REDUCTION OXIDASE 1 (FRO1); FUNCTIONS IN: ferric-chelate reductase activity; LOCATED IN: integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Ferric reductase, NAD binding (InterPro:IPR013121), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130); BEST Arabidopsis thaliana protein match is: FRO3; ferric-chelate reductase (TAIR:AT1G23020.1); Has 1689 Blast hits to 1686 proteins in 247 species: Archae - 0; Bacteria - 149; Metazoa - 471; Fungi - 717; Plants - 251; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT1G01590.1p  transcript_id AT1G01590.1  protein_id AT1G01590.1p  transcript_id AT1G01590.1  
At1g01600	chr1:000219200	0.0	W/219200-219621,219752-220994	AT1G01600.1  CDS  gene_syn CYP86A4, CYTOCHROME P450, FAMILY 86, SUBFAMILY A, POLYPEPTIDE 4, F22L4.14, F22L4_14  gene CYP86A4  function Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly at highest level in mature stems and flowers.  go_process fatty acid metabolic process|GO:0006631|15709153|IDA  go_function fatty acid (omega-1)-hydroxylase activity|GO:0008393|15709153|IDA  go_function oxygen binding|GO:0019825||ISS  product CYP86A4; fatty acid (omega-1)-hydroxylase/ oxygen binding  note CYP86A4; FUNCTIONS IN: fatty acid (omega-1)-hydroxylase activity, oxygen binding; INVOLVED IN: fatty acid metabolic process; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP86A2 (CYTOCHROME P450 86 A2); fatty acid (omega-1)-hydroxylase/ oxygen binding (TAIR:AT4G00360.1); Has 20078 Blast hits to 20026 proteins in 1081 species: Archae - 19; Bacteria - 1457; Metazoa - 9293; Fungi - 3922; Plants - 4687; Viruses - 3; Other Eukaryotes - 697 (source: NCBI BLink).  protein_id AT1G01600.1p  transcript_id AT1G01600.1  protein_id AT1G01600.1p  transcript_id AT1G01600.1  
At1g01610	chr1:000223945	0.0	C/223945-224255,223551-223866,222622-223096,221950-222359	AT1G01610.1  CDS  gene_syn ATGPAT4, F22L4.15, F22L4_15, GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 4, GPAT4  gene GPAT4  function Encodes a protein with glycerol-3-phosphate acyltransferase activity. Involved in cutin assembly. Is functional redundant of GPAT8.  go_process metabolic process|GO:0008152||ISS  go_process cutin biosynthetic process|GO:0010143|17991776|IMP  go_function 1-acylglycerol-3-phosphate O-acyltransferase activity|GO:0003841|12897259|IGI  go_function acyltransferase activity|GO:0008415||ISS  product GPAT4 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 4); 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase  note GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 4 (GPAT4); FUNCTIONS IN: 1-acylglycerol-3-phosphate O-acyltransferase activity, acyltransferase activity; INVOLVED IN: cutin biosynthetic process, metabolic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: GPAT8 (glycerol-3-phosphate acyltransferase 8); acyltransferase/ glycerol-3-phosphate O-acyltransferase (TAIR:AT4G00400.1); Has 215 Blast hits to 209 proteins in 23 species: Archae - 0; Bacteria - 15; Metazoa - 9; Fungi - 0; Plants - 184; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G01610.1p  transcript_id AT1G01610.1  protein_id AT1G01610.1p  transcript_id AT1G01610.1  
At1g01620	chr1:000226849	0.0	C/226849-226960,226396-226691,226171-226311,225986-226081	AT1G01620.2  CDS  gene_syn F22L4.16, F22L4_16, PIP1;3, PIP1C, PLASMA MEMBRANE INTRINSIC PROTEIN 1;3, PLASMA MEMBRANE INTRINSIC PROTEIN 1C, TMP-B  gene PIP1C  function a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component plasma membrane|GO:0005886|7920711|IDA  go_component plasma membrane|GO:0005886|7920711|TAS  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_process water transport|GO:0006833|7920711|IDA  go_process response to water deprivation|GO:0009414|16235111|IEP  go_process response to salt stress|GO:0009651|16183846|IEP  go_function water channel activity|GO:0015250|7920711|IDA  go_function water channel activity|GO:0015250||ISS  product PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C); water channel  note PLASMA MEMBRANE INTRINSIC PROTEIN 1C (PIP1C); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, response to salt stress, response to water deprivation, water transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: PIP1;4 (PLASMA MEMBRANE INTRINSIC PROTEIN 1;4); water channel (TAIR:AT4G00430.1); Has 6531 Blast hits to 6525 proteins in 1238 species: Archae - 57; Bacteria - 2581; Metazoa - 1253; Fungi - 283; Plants - 1488; Viruses - 2; Other Eukaryotes - 867 (source: NCBI BLink).  protein_id AT1G01620.2p  transcript_id AT1G01620.2  protein_id AT1G01620.2p  transcript_id AT1G01620.2  
At1g01620	chr1:000226849	0.0	C/226849-227176,226396-226691,226171-226311,225986-226081	AT1G01620.1  CDS  gene_syn F22L4.16, F22L4_16, PIP1;3, PIP1C, PLASMA MEMBRANE INTRINSIC PROTEIN 1;3, PLASMA MEMBRANE INTRINSIC PROTEIN 1C, TMP-B  gene PIP1C  function a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development.  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component plasma membrane|GO:0005886|7920711|IDA  go_component plasma membrane|GO:0005886|7920711|TAS  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_process water transport|GO:0006833|7920711|IDA  go_process response to water deprivation|GO:0009414|16235111|IEP  go_process response to salt stress|GO:0009651|16183846|IEP  go_function water channel activity|GO:0015250|7920711|IDA  go_function water channel activity|GO:0015250||ISS  product PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C); water channel  note PLASMA MEMBRANE INTRINSIC PROTEIN 1C (PIP1C); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, response to salt stress, response to water deprivation, water transport; LOCATED IN: plasma membrane, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: PIP1;4 (PLASMA MEMBRANE INTRINSIC PROTEIN 1;4); water channel (TAIR:AT4G00430.1); Has 6745 Blast hits to 6732 proteins in 1253 species: Archae - 65; Bacteria - 2619; Metazoa - 1273; Fungi - 287; Plants - 1492; Viruses - 2; Other Eukaryotes - 1007 (source: NCBI BLink).  protein_id AT1G01620.1p  transcript_id AT1G01620.1  protein_id AT1G01620.1p  transcript_id AT1G01620.1  
At1g01630	chr1:000229206	0.0	W/229206-229343,229429-229724,229829-229934,230349-230459,230559-230675	AT1G01630.1  CDS  gene_syn T1N6.1, T1N6_1  go_component cellular_component|GO:0005575||ND  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative  note SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT1G14820.3); Has 2114 Blast hits to 2114 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 944; Fungi - 440; Plants - 452; Viruses - 0; Other Eukaryotes - 278 (source: NCBI BLink).  protein_id AT1G01630.1p  transcript_id AT1G01630.1  protein_id AT1G01630.1p  transcript_id AT1G01630.1  
At1g01640	chr1:000231784	0.0	C/231784-231915,231164-231655	AT1G01640.1  CDS  gene_syn T1N6.2, T1N6_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515|15659098|IPI  go_function protein binding|GO:0005515||ISS  product speckle-type POZ protein-related  note speckle-type POZ protein-related; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: speckle-type POZ protein-related (TAIR:AT3G56230.1); Has 3944 Blast hits to 3857 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 3305; Fungi - 7; Plants - 459; Viruses - 32; Other Eukaryotes - 141 (source: NCBI BLink).  protein_id AT1G01640.1p  transcript_id AT1G01640.1  protein_id AT1G01640.1p  transcript_id AT1G01640.1  
At1g01640	chr1:000231784	0.0	C/231784-231915,231164-231655	AT1G01640.2  CDS  gene_syn T1N6.2, T1N6_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515|15659098|IPI  go_function protein binding|GO:0005515||ISS  product speckle-type POZ protein-related  note speckle-type POZ protein-related; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: speckle-type POZ protein-related (TAIR:AT3G56230.1); Has 3944 Blast hits to 3857 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 3305; Fungi - 7; Plants - 459; Viruses - 32; Other Eukaryotes - 141 (source: NCBI BLink).  protein_id AT1G01640.2p  transcript_id AT1G01640.2  protein_id AT1G01640.2p  transcript_id AT1G01640.2  
At1g01650	chr1:000236429	0.0	C/236429-236537,236145-236296,235845-236027,235718-235752,235198-235360,234935-234988,234529-234621,234250-234392,233548-233618,233387-233470,233188-233297	AT1G01650.2  CDS  gene_syn T1N6.3, T1N6_3  go_component integral to membrane|GO:0016021||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  go_function peptidase activity|GO:0008233||ISS  product aspartic-type endopeptidase/ peptidase  note aspartic-type endopeptidase/ peptidase; FUNCTIONS IN: peptidase activity, aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22B, signal peptide peptidase (InterPro:IPR007369); BEST Arabidopsis thaliana protein match is: protease-associated (PA) domain-containing protein (TAIR:AT1G63690.1); Has 719 Blast hits to 695 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 394; Fungi - 92; Plants - 137; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT1G01650.2p  transcript_id AT1G01650.2  protein_id AT1G01650.2p  transcript_id AT1G01650.2  
At1g01650	chr1:000237504	0.0	C/237504-237647,236865-237023,236673-236784,236429-236548,236145-236296,235845-236027,235718-235752,235198-235360,234935-234988,234529-234621,234250-234392,233548-233618,233387-233470,233188-233297	AT1G01650.1  CDS  gene_syn T1N6.3, T1N6_3  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  go_function peptidase activity|GO:0008233||ISS  product aspartic-type endopeptidase/ peptidase  note aspartic-type endopeptidase/ peptidase; FUNCTIONS IN: peptidase activity, aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22B, signal peptide peptidase (InterPro:IPR007369); BEST Arabidopsis thaliana protein match is: protease-associated (PA) domain-containing protein (TAIR:AT1G63690.1); Has 1108 Blast hits to 1084 proteins in 196 species: Archae - 0; Bacteria - 119; Metazoa - 534; Fungi - 104; Plants - 174; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).  protein_id AT1G01650.1p  transcript_id AT1G01650.1  protein_id AT1G01650.1p  transcript_id AT1G01650.1  
At1g01660	chr1:000242449	0.0	C/242449-242608,242214-242290,241983-242113,241805-241909,241539-241719,241306-241443,240960-241226,240744-240884,240352-240672,240057-240242	AT1G01660.1  CDS  gene_syn T1N6.4, T1N6_4  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  product U-box domain-containing protein  note U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein kinase family protein / U-box domain-containing protein (TAIR:AT2G45910.1); Has 62005 Blast hits to 34279 proteins in 1446 species: Archae - 563; Bacteria - 5706; Metazoa - 31241; Fungi - 3963; Plants - 2717; Viruses - 209; Other Eukaryotes - 17606 (source: NCBI BLink).  protein_id AT1G01660.1p  transcript_id AT1G01660.1  protein_id AT1G01660.1p  transcript_id AT1G01660.1  
At1g01670	chr1:000245151	0.0	C/245151-245163,244770-244873,244505-244635,244257-244361,244035-244182,243336-243746,242943-243128	AT1G01670.1  CDS  gene_syn T1N6.28, T1N6_28  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  product U-box domain-containing protein  note U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein (TAIR:AT1G01680.1); Has 2979 Blast hits to 2299 proteins in 198 species: Archae - 2; Bacteria - 86; Metazoa - 849; Fungi - 177; Plants - 922; Viruses - 10; Other Eukaryotes - 933 (source: NCBI BLink).  protein_id AT1G01670.1p  transcript_id AT1G01670.1  protein_id AT1G01670.1p  transcript_id AT1G01670.1  
At1g01680	chr1:000248191	0.0	C/248191-248329,247577-247680,247362-247492,247167-247268,246949-247078,246731-246853,246411-246608	AT1G01680.1  CDS  gene_syn T1N6.5, T1N6_5  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  product U-box domain-containing protein  note U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein (TAIR:AT1G01670.1); Has 1312 Blast hits to 1231 proteins in 109 species: Archae - 0; Bacteria - 18; Metazoa - 184; Fungi - 15; Plants - 941; Viruses - 3; Other Eukaryotes - 151 (source: NCBI BLink).  protein_id AT1G01680.1p  transcript_id AT1G01680.1  protein_id AT1G01680.1p  transcript_id AT1G01680.1  
At1g01690	chr1:000249242	0.0	W/249242-249306,249543-249693,249774-249930,250017-250151,250536-250588,250669-250863,251004-251066,251143-251184,251260-251316,251399-251440,251539-251594,251680-251827,251922-252006,252121-252221	AT1G01690.1  CDS  gene_syn T1N6.6, T1N6_6  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 182 Blast hits to 180 proteins in 58 species: Archae - 2; Bacteria - 52; Metazoa - 80; Fungi - 4; Plants - 16; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT1G01690.1p  transcript_id AT1G01690.1  protein_id AT1G01690.1p  transcript_id AT1G01690.1  
At1g01695	chr1:000252947	0.0	W/252947-253457,253531-253679,253775-253874,253954-254495	AT1G01695.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00440.3); Has 50 Blast hits to 50 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01695.1p  transcript_id AT1G01695.1  protein_id AT1G01695.1p  transcript_id AT1G01695.1  
At1g01700	chr1:000261129	0.0	C/261129-261474,260921-261037,260670-260824,260508-260582,260118-260417,259690-260034,259495-259614	AT1G01700.1  CDS  gene_syn ATROPGEF2, KINASE PARTNER PROTEIN-LIKE, KPP-LIKE, ROPGEF2, T1N6.8, T1N6_8  gene ROPGEF2  function Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function Rho guanyl-nucleotide exchange factor activity|GO:0005089|15980860|IDA  go_function protein binding|GO:0005515|15980860|TAS  product ROPGEF2; Rho guanyl-nucleotide exchange factor/ protein binding  note ROPGEF2; FUNCTIONS IN: protein binding, Rho guanyl-nucleotide exchange factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: Rho guanyl-nucleotide exchange factor (TAIR:AT4G00460.2); Has 173 Blast hits to 172 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01700.1p  transcript_id AT1G01700.1  protein_id AT1G01700.1p  transcript_id AT1G01700.1  
At1g01710	chr1:000262950	0.0	W/262950-262965,263047-263139,263232-263299,263369-263444,263526-263572,263645-263770,263857-263934,264073-264160,264280-264392,264520-264582,264657-264712,264797-264901,265021-265077,265336-265437,265578-265626,265777-265845,265952-266029	AT1G01710.1  CDS  gene_syn T1N6.10, T1N6.9, T1N6_10, T1N6_9  go_component peroxisome|GO:0005777|17951448|IDA  go_process acyl-CoA metabolic process|GO:0006637||IEA  go_function acyl-CoA thioesterase activity|GO:0016291||IEA  go_process acyl-CoA metabolic process|GO:0006637||ISS  go_function acyl-CoA thioesterase activity|GO:0016291||ISS  go_function cyclic nucleotide binding|GO:0030551||ISS  product acyl-CoA thioesterase family protein  note acyl-CoA thioesterase family protein; FUNCTIONS IN: cyclic nucleotide binding, acyl-CoA thioesterase activity; INVOLVED IN: acyl-CoA metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Acyl-CoA thioesterase (InterPro:IPR003703), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: acyl-CoA thioesterase family protein (TAIR:AT4G00520.2); Has 2588 Blast hits to 2566 proteins in 602 species: Archae - 0; Bacteria - 1102; Metazoa - 404; Fungi - 233; Plants - 38; Viruses - 0; Other Eukaryotes - 811 (source: NCBI BLink).  protein_id AT1G01710.1p  transcript_id AT1G01710.1  protein_id AT1G01710.1p  transcript_id AT1G01710.1  
At1g01720	chr1:000268471	0.0	W/268471-268630,268717-268994,269083-269514	AT1G01720.1  CDS  gene_syn ANAC002, ATAF1, Arabidopsis NAC domain containing protein 2, T1N6.12, T1N6_12  gene ATAF1  function Belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding and abscisic acid. ATAF1 attentuates ABA signaling and sythesis. Mutants are hyposensitive to ABA.  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_process response to wounding|GO:0009611|11516145|IEP  go_process negative regulation of abscisic acid mediated signaling|GO:0009788|18694460|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|11516145|TAS  product ATAF1; transcription activator/ transcription factor  note ATAF1; FUNCTIONS IN: transcription factor activity, transcription activator activity; INVOLVED IN: multicellular organismal development, negative regulation of abscisic acid mediated signaling, response to wounding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac032 (Arabidopsis NAC domain containing protein 32); transcription factor (TAIR:AT1G77450.1); Has 1635 Blast hits to 1632 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1635; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01720.1p  transcript_id AT1G01720.1  protein_id AT1G01720.1p  transcript_id AT1G01720.1  
At1g01725	chr1:000270622	0.0	C/270622-270735,270016-270090	AT1G01725.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 10 Blast hits to 10 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01725.1p  transcript_id AT1G01725.1  protein_id AT1G01725.1p  transcript_id AT1G01725.1  
At1g01730	chr1:000271002	0.0	W/271002-271289,271379-271433,271541-271872	AT1G01730.1  CDS  gene_syn T1N6.14, T1N6_14  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 2; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01730.1p  transcript_id AT1G01730.1  protein_id AT1G01730.1p  transcript_id AT1G01730.1  
At1g01740	chr1:000274167	0.0	C/274167-274239,273863-274083,273653-273788,273429-273562,273234-273339,273064-273149,272651-272983,272445-272555,272111-272362	AT1G01740.1  CDS  gene_syn T1N6.15, T1N6_15  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function binding|GO:0005488||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: BSK3 (BR-SIGNALING KINASE 3); ATP binding / binding / kinase/ protein kinase/ protein tyrosine kinase (TAIR:AT4G00710.1); Has 21378 Blast hits to 20996 proteins in 857 species: Archae - 6; Bacteria - 1226; Metazoa - 6677; Fungi - 136; Plants - 12135; Viruses - 92; Other Eukaryotes - 1106 (source: NCBI BLink).  protein_id AT1G01740.1p  transcript_id AT1G01740.1  protein_id AT1G01740.1p  transcript_id AT1G01740.1  
At1g01750	chr1:000275528	0.0	W/275528-275530,275632-275897,275973-276126	AT1G01750.1  CDS  gene_syn ACTIN DEPOLYMERIZING FACTOR 11, ADF11, T1N6.16, T1N6_16  gene ADF11  go_component intracellular|GO:0005622||IEA  go_function actin binding|GO:0003779||IEA  go_component intracellular|GO:0005622||ISS  go_process biological_process|GO:0008150||ND  product ADF11 (ACTIN DEPOLYMERIZING FACTOR 11); actin binding  note ACTIN DEPOLYMERIZING FACTOR 11 (ADF11); FUNCTIONS IN: actin binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Actin-binding, cofilin/tropomyosin type (InterPro:IPR002108); BEST Arabidopsis thaliana protein match is: ADF8 (ACTIN DEPOLYMERIZING FACTOR 8); actin binding (TAIR:AT4G00680.1); Has 1202 Blast hits to 1183 proteins in 208 species: Archae - 0; Bacteria - 3; Metazoa - 637; Fungi - 111; Plants - 307; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).  protein_id AT1G01750.1p  transcript_id AT1G01750.1  protein_id AT1G01750.1p  transcript_id AT1G01750.1  
At1g01760	chr1:000278316	0.0	C/278316-278448,277947-278252,277717-277863,277493-277606,277232-277401,277077-277153,276870-276989,276706-276793,276412-276519	AT1G01760.1  CDS  gene_syn T1N6.17, T1N6_17  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_function adenosine deaminase activity|GO:0004000||IEA  go_component cellular_component|GO:0005575||ND  go_process RNA processing|GO:0006396||ISS  go_function RNA binding|GO:0003723||ISS  go_function adenosine deaminase activity|GO:0004000||ISS  product RNA binding / adenosine deaminase  note RNA binding / adenosine deaminase; FUNCTIONS IN: RNA binding, adenosine deaminase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Adenosine deaminase/editase (InterPro:IPR002466); Has 707 Blast hits to 645 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 542; Fungi - 79; Plants - 27; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT1G01760.1p  transcript_id AT1G01760.1  protein_id AT1G01760.1p  transcript_id AT1G01760.1  
At1g01770	chr1:000278759	0.0	W/278759-278809,278887-279088,279166-279240,279327-279425,279536-279576,279797-279910,279974-280088,280180-280370,280449-280568,280657-280737,280889-281121,281309-281348,281438-281536,281759-282189,282484-282490	AT1G01770.1  CDS  gene_syn T1N6.18, T1N6_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1446 (InterPro:IPR010839); Has 1139 Blast hits to 1078 proteins in 171 species: Archae - 0; Bacteria - 475; Metazoa - 18; Fungi - 70; Plants - 13; Viruses - 0; Other Eukaryotes - 563 (source: NCBI BLink).  protein_id AT1G01770.1p  transcript_id AT1G01770.1  protein_id AT1G01770.1p  transcript_id AT1G01770.1  
At1g01780	chr1:000282919	0.0	W/282919-283053,283132-283231,283314-283336,283444-283533,283813-284082	AT1G01780.1  CDS  gene_syn T1N6.19, T1N6_19  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product LIM domain-containing protein  note LIM domain-containing protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781); BEST Arabidopsis thaliana protein match is: LIM domain-containing protein (TAIR:AT2G45800.1); Has 3943 Blast hits to 2435 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 3416; Fungi - 12; Plants - 261; Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink).  protein_id AT1G01780.1p  transcript_id AT1G01780.1  protein_id AT1G01780.1p  transcript_id AT1G01780.1  
At1g01790	chr1:000284781	0.0	W/284781-286351,286452-286623,286717-286807,286997-287133,287221-287280,287395-287514,287642-287710,287789-287854,288087-288176,288401-288505,288593-288721,288882-289091,289237-289386,289539-289592,289718-289776,290028-290094,290170-290346,290439-290495,290578-290652,290747-290869	AT1G01790.1  CDS  gene_syn ATKEA1, K EFFLUX ANTIPORTER 1, KEA1, T1N6.21, T1N6_21  gene KEA1  function K efflux antiporter KEA1  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process cation transport|GO:0006812||IEA  go_process potassium ion transport|GO:0006813||IEA  go_process metabolic process|GO:0008152||IEA  go_function potassium ion transmembrane transporter activity|GO:0015079||ISS  go_function potassium:hydrogen antiporter activity|GO:0015386||ISS  product KEA1 (K EFFLUX ANTIPORTER 1); potassium ion transmembrane transporter/ potassium:hydrogen antiporter  note K EFFLUX ANTIPORTER 1 (KEA1); FUNCTIONS IN: potassium:hydrogen antiporter activity, potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport, cation transport, metabolic process; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: K+/H+ exchanger (InterPro:IPR004771), Cation/H+ exchanger (InterPro:IPR006153), NAD(P)-binding (InterPro:IPR016040), Regulator of K+ conductance, N-terminal (InterPro:IPR003148); BEST Arabidopsis thaliana protein match is: KEA2; potassium ion transmembrane transporter/ potassium:hydrogen antiporter (TAIR:AT4G00630.1); Has 17551 Blast hits to 14677 proteins in 1600 species: Archae - 450; Bacteria - 6559; Metazoa - 5332; Fungi - 777; Plants - 522; Viruses - 54; Other Eukaryotes - 3857 (source: NCBI BLink).  protein_id AT1G01790.1p  transcript_id AT1G01790.1  protein_id AT1G01790.1p  transcript_id AT1G01790.1  
At1g01800	chr1:000293396	0.0	W/293396-293409,293500-293752,294055-294120,294210-294386,294511-294888	AT1G01800.1  CDS  gene_syn T1N6.22, T1N6_22  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT3G61220.1); Has 43005 Blast hits to 42969 proteins in 1859 species: Archae - 319; Bacteria - 25615; Metazoa - 3418; Fungi - 2138; Plants - 1330; Viruses - 0; Other Eukaryotes - 10185 (source: NCBI BLink).  protein_id AT1G01800.1p  transcript_id AT1G01800.1  protein_id AT1G01800.1p  transcript_id AT1G01800.1  
At1g01800	chr1:000293595	0.0	W/293595-293756,294055-294120,294210-294386,294511-294888	AT1G01800.2  CDS  gene_syn T1N6.22, T1N6_22  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT3G61220.1); Has 791 Blast hits to 786 proteins in 197 species: Archae - 4; Bacteria - 273; Metazoa - 229; Fungi - 29; Plants - 157; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).  protein_id AT1G01800.2p  transcript_id AT1G01800.2  protein_id AT1G01800.2p  transcript_id AT1G01800.2  
At1g01810	chr1:000295242	0.0	W/295242-295724	AT1G01810.1  CDS  gene_syn T1N6.23, T1N6_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01810.1p  transcript_id AT1G01810.1  protein_id AT1G01810.1p  transcript_id AT1G01810.1  
At1g01820	chr1:000297532	0.0	C/297532-297723,297101-297175,296951-297025,296782-296862,296626-296700,296362-296535,296213-296248	AT1G01820.1  CDS  gene_syn PEROXIN 11C, PEX11C, T1N6.24, T1N6_24  gene PEX11C  function member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation.  go_component peroxisomal membrane|GO:0005778||ISS  go_component integral to peroxisomal membrane|GO:0005779|17220199|IDA  go_process peroxisome organization|GO:0007031|17478547|IMP  go_process peroxisome fission|GO:0016559|17220199|IMP  go_process peroxisome fission|GO:0016559|18539750|IMP  go_process peroxisome fission|GO:0016559||ISS  go_function molecular_function|GO:0003674||ND  product PEX11C (PEROXIN 11C)  note PEROXIN 11C (PEX11C); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: peroxisome fission, peroxisome organization; LOCATED IN: peroxisomal membrane, integral to peroxisomal membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peroxisomal biogenesis factor 11 (InterPro:IPR008733); BEST Arabidopsis thaliana protein match is: PEX11D (TAIR:AT2G45740.3); Has 192 Blast hits to 192 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 44; Fungi - 28; Plants - 102; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G01820.1p  transcript_id AT1G01820.1  protein_id AT1G01820.1p  transcript_id AT1G01820.1  
At1g01830	chr1:000298717	0.0	C/298717-300441	AT1G01830.1  CDS  gene_syn T1N6.25, T1N6_25  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  product armadillo/beta-catenin repeat family protein  note armadillo/beta-catenin repeat family protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein (TAIR:AT2G45720.2); Has 1987 Blast hits to 1326 proteins in 150 species: Archae - 2; Bacteria - 14; Metazoa - 434; Fungi - 322; Plants - 999; Viruses - 0; Other Eukaryotes - 216 (source: NCBI BLink).  protein_id AT1G01830.1p  transcript_id AT1G01830.1  protein_id AT1G01830.1p  transcript_id AT1G01830.1  
At1g01830	chr1:000298717	0.0	C/298717-300441	AT1G01830.2  CDS  gene_syn T1N6.25, T1N6_25  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  product armadillo/beta-catenin repeat family protein  note armadillo/beta-catenin repeat family protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein (TAIR:AT2G45720.2); Has 1987 Blast hits to 1326 proteins in 150 species: Archae - 2; Bacteria - 14; Metazoa - 434; Fungi - 322; Plants - 999; Viruses - 0; Other Eukaryotes - 216 (source: NCBI BLink).  protein_id AT1G01830.2p  transcript_id AT1G01830.2  protein_id AT1G01830.2p  transcript_id AT1G01830.2  
At1g01830	chr1:000298717	0.0	C/298717-300441	AT1G01830.3  CDS  gene_syn T1N6.25, T1N6_25  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  product armadillo/beta-catenin repeat family protein  note armadillo/beta-catenin repeat family protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein (TAIR:AT2G45720.2); Has 1987 Blast hits to 1326 proteins in 150 species: Archae - 2; Bacteria - 14; Metazoa - 434; Fungi - 322; Plants - 999; Viruses - 0; Other Eukaryotes - 216 (source: NCBI BLink).  protein_id AT1G01830.3p  transcript_id AT1G01830.3  protein_id AT1G01830.3p  transcript_id AT1G01830.3  
At1g01840	chr1:000303650	0.0	W/303650-304108	AT1G01840.1  CDS  gene_syn T1N6.26, T1N6_26  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; Has 11 Blast hits to 11 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01840.1p  transcript_id AT1G01840.1  protein_id AT1G01840.1p  transcript_id AT1G01840.1  
At1g01860	chr1:000306045	0.0	C/306045-306275,305785-305934,305547-305702,305347-305442,305174-305258,305038-305090,304880-304963,304697-304807,304439-304504	AT1G01860.1  CDS  gene_syn DIMETHYLADENOSINE TRANSFERASE, PALEFACE 1, PFC1  gene PFC1  function dimethyladenosine transferase  go_component chloroplast|GO:0009507||IEA  go_process response to cold|GO:0009409|9596631|IMP  go_function mRNA (2 -O-methyladenosine-N6-)-methyltransferase activity|GO:0016422|9596631|ISS  product PFC1 (PALEFACE 1); mRNA (2 -O-methyladenosine-N6-)-methyltransferase  note PALEFACE 1 (PFC1); FUNCTIONS IN: mRNA (2 -O-methyladenosine-N6-)-methyltransferase activity; INVOLVED IN: response to cold; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal RNA adenine methylase transferase (InterPro:IPR001737); BEST Arabidopsis thaliana protein match is: ribosomal RNA adenine dimethylase family protein (TAIR:AT5G66360.2); Has 6668 Blast hits to 6664 proteins in 1755 species: Archae - 141; Bacteria - 3453; Metazoa - 227; Fungi - 95; Plants - 56; Viruses - 0; Other Eukaryotes - 2696 (source: NCBI BLink).  protein_id AT1G01860.1p  transcript_id AT1G01860.1  protein_id AT1G01860.1p  transcript_id AT1G01860.1  
At1g01870	chr1:000306384	0.0	W/306384-306456	AT1G01870.1  tRNA  gene_syn 51779.TRNA-VAL-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Val (anticodon: TAC)  transcript_id AT1G01870.1  
At1g01880	chr1:000308797	0.0	C/308797-308991,308397-308573,308148-308318,307889-308070,307441-307805,307161-307359,306893-307073,306558-306800	AT1G01880.1  CDS  gene_syn F22M8.2, F22M8_2  go_process DNA repair|GO:0006281||IEA  go_function DNA binding|GO:0003677||IEA  go_function catalytic activity|GO:0003824||IEA  go_function nuclease activity|GO:0004518||IEA  go_component cellular_component|GO:0005575||ND  go_process DNA repair|GO:0006281||ISS  go_function nuclease activity|GO:0004518||ISS  product DNA repair protein, putative  note DNA repair protein, putative; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG I (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: DNA binding / catalytic/ chromatin binding / nuclease (TAIR:AT3G48900.2); Has 1560 Blast hits to 1437 proteins in 260 species: Archae - 192; Bacteria - 1; Metazoa - 427; Fungi - 473; Plants - 104; Viruses - 11; Other Eukaryotes - 352 (source: NCBI BLink).  protein_id AT1G01880.1p  transcript_id AT1G01880.1  protein_id AT1G01880.1p  transcript_id AT1G01880.1  
At1g01890	chr1:000309275	0.0	C/309275-309347	AT1G01890.1  tRNA  gene_syn 51779.TRNA-LYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Lys (anticodon: CTT)  transcript_id AT1G01890.1  
At1g01900	chr1:000310332	0.0	W/310332-310981,311337-313011	AT1G01900.1  CDS  gene_syn ATSBT1.1, F22M8.3, F22M8_3, SBTI1.1  gene SBTI1.1  function Encodes AtSBT1.1, a subtilisin-like serine protease. Cleaves the phytosulfokine AtPSK4, a growth promoting peptide.  go_component cell wall|GO:0005618|15593128|IDA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_component extracellular matrix|GO:0031012|18643977|IDA  go_component apoplast|GO:0048046||IDA  go_process proteolysis|GO:0006508||ISS  go_function serine-type endopeptidase activity|GO:0004252||IDA  product SBTI1.1; serine-type endopeptidase  note SBTI1.1; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: extracellular matrix, apoplast, cell wall; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: ARA12; serine-type endopeptidase (TAIR:AT5G67360.1); Has 4035 Blast hits to 3674 proteins in 672 species: Archae - 120; Bacteria - 2294; Metazoa - 45; Fungi - 305; Plants - 852; Viruses - 0; Other Eukaryotes - 419 (source: NCBI BLink).  protein_id AT1G01900.1p  transcript_id AT1G01900.1  protein_id AT1G01900.1p  transcript_id AT1G01900.1  
At1g01910	chr1:000315577	0.0	C/315577-315644,314652-314802,314441-314551,314087-314225,313880-313995,313595-313759	AT1G01910.5  CDS  gene_syn F22M8.4, F22M8_4  go_component endomembrane system|GO:0012505||IEA  go_process cellular metal ion homeostasis|GO:0006875||IEA  go_function ATP binding|GO:0005524||IEA  go_component membrane|GO:0016020||ISS  go_process anion transport|GO:0006820||ISS  go_function ATP binding|GO:0005524||ISS  product anion-transporting ATPase, putative  note anion-transporting ATPase, putative; FUNCTIONS IN: ATP binding; INVOLVED IN: cellular metal ion homeostasis, anion transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, anion-transporting (InterPro:IPR003348); BEST Arabidopsis thaliana protein match is: anion-transporting ATPase family protein (TAIR:AT5G60730.1); Has 1171 Blast hits to 1087 proteins in 409 species: Archae - 110; Bacteria - 683; Metazoa - 112; Fungi - 88; Plants - 56; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT1G01910.5p  transcript_id AT1G01910.5  protein_id AT1G01910.5p  transcript_id AT1G01910.5  
At1g01910	chr1:000315577	0.0	C/315577-315831,314891-315015,314652-314802,314441-314551,314087-314225,313872-313995,313746-313752	AT1G01910.3  CDS  gene_syn F22M8.4, F22M8_4  go_process cellular metal ion homeostasis|GO:0006875||IEA  go_function ATP binding|GO:0005524||IEA  go_component membrane|GO:0016020||ISS  go_process anion transport|GO:0006820||ISS  go_function ATP binding|GO:0005524||ISS  product anion-transporting ATPase, putative  note anion-transporting ATPase, putative; FUNCTIONS IN: ATP binding; INVOLVED IN: cellular metal ion homeostasis, anion transport; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, anion-transporting (InterPro:IPR003348); BEST Arabidopsis thaliana protein match is: anion-transporting ATPase family protein (TAIR:AT5G60730.1); Has 1727 Blast hits to 1461 proteins in 458 species: Archae - 112; Bacteria - 1099; Metazoa - 114; Fungi - 90; Plants - 58; Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink).  protein_id AT1G01910.3p  transcript_id AT1G01910.3  protein_id AT1G01910.3p  transcript_id AT1G01910.3  
At1g01910	chr1:000315577	0.0	C/315577-315831,314891-315015,314652-314802,314441-314551,314087-314225,313880-313995,313595-313759	AT1G01910.1  CDS  gene_syn F22M8.4, F22M8_4  go_process cellular metal ion homeostasis|GO:0006875||IEA  go_function ATP binding|GO:0005524||IEA  go_component membrane|GO:0016020||ISS  go_process anion transport|GO:0006820||ISS  go_function ATP binding|GO:0005524||ISS  product anion-transporting ATPase, putative  note anion-transporting ATPase, putative; FUNCTIONS IN: ATP binding; INVOLVED IN: cellular metal ion homeostasis, anion transport; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, anion-transporting (InterPro:IPR003348); BEST Arabidopsis thaliana protein match is: anion-transporting ATPase family protein (TAIR:AT5G60730.1); Has 1732 Blast hits to 1465 proteins in 458 species: Archae - 112; Bacteria - 1101; Metazoa - 115; Fungi - 90; Plants - 59; Viruses - 0; Other Eukaryotes - 255 (source: NCBI BLink).  protein_id AT1G01910.1p  transcript_id AT1G01910.1  protein_id AT1G01910.1p  transcript_id AT1G01910.1  
At1g01910	chr1:000315577	0.0	C/315577-315831,314891-315015,314652-314802,314441-314551,314087-314225,313880-313995,313595-313759	AT1G01910.2  CDS  gene_syn F22M8.4, F22M8_4  go_process cellular metal ion homeostasis|GO:0006875||IEA  go_function ATP binding|GO:0005524||IEA  go_component membrane|GO:0016020||ISS  go_process anion transport|GO:0006820||ISS  go_function ATP binding|GO:0005524||ISS  product anion-transporting ATPase, putative  note anion-transporting ATPase, putative; FUNCTIONS IN: ATP binding; INVOLVED IN: cellular metal ion homeostasis, anion transport; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, anion-transporting (InterPro:IPR003348); BEST Arabidopsis thaliana protein match is: anion-transporting ATPase family protein (TAIR:AT5G60730.1); Has 1732 Blast hits to 1465 proteins in 458 species: Archae - 112; Bacteria - 1101; Metazoa - 115; Fungi - 90; Plants - 59; Viruses - 0; Other Eukaryotes - 255 (source: NCBI BLink).  protein_id AT1G01910.2p  transcript_id AT1G01910.2  protein_id AT1G01910.2p  transcript_id AT1G01910.2  
At1g01910	chr1:000315577	0.0	C/315577-315831,314891-315015,314652-314802,314441-314551,314087-314225,313880-313995,313595-313759	AT1G01910.4  CDS  gene_syn F22M8.4, F22M8_4  go_process cellular metal ion homeostasis|GO:0006875||IEA  go_function ATP binding|GO:0005524||IEA  go_component membrane|GO:0016020||ISS  go_process anion transport|GO:0006820||ISS  go_function ATP binding|GO:0005524||ISS  product anion-transporting ATPase, putative  note anion-transporting ATPase, putative; FUNCTIONS IN: ATP binding; INVOLVED IN: cellular metal ion homeostasis, anion transport; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, anion-transporting (InterPro:IPR003348); BEST Arabidopsis thaliana protein match is: anion-transporting ATPase family protein (TAIR:AT5G60730.1); Has 1732 Blast hits to 1465 proteins in 458 species: Archae - 112; Bacteria - 1101; Metazoa - 115; Fungi - 90; Plants - 59; Viruses - 0; Other Eukaryotes - 255 (source: NCBI BLink).  protein_id AT1G01910.4p  transcript_id AT1G01910.4  protein_id AT1G01910.4p  transcript_id AT1G01910.4  
At1g01920	chr1:000316204	0.0	W/316204-316257,316344-316440,316539-316713,316792-316897,317008-317090,317167-317193,317294-317439,317553-317642,317765-317845,317979-318040,318145-318201,318362-318433,318565-318813,318986-319101,319204-319296,319372-319507	AT1G01920.2  CDS  gene_syn F22M8.5, F22M8_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SET domain-containing protein  note SET domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putative (TAIR:AT1G14030.1); Has 454 Blast hits to 452 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 143; Fungi - 155; Plants - 108; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT1G01920.2p  transcript_id AT1G01920.2  protein_id AT1G01920.2p  transcript_id AT1G01920.2  
At1g01920	chr1:000316204	0.0	W/316204-316257,316344-316440,316539-316713,316792-316897,317008-317090,317167-317193,317294-317456,317561-317642,317765-317845,317979-318040,318145-318201,318296-318433,318565-318813,318986-319101,319204-319296,319372-319507	AT1G01920.1  CDS  gene_syn F22M8.5, F22M8_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SET domain-containing protein  note SET domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putative (TAIR:AT1G14030.1); Has 423 Blast hits to 420 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 140; Fungi - 142; Plants - 99; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT1G01920.1p  transcript_id AT1G01920.1  protein_id AT1G01920.1p  transcript_id AT1G01920.1  
At1g01930	chr1:000322513	0.0	C/322513-322809,321958-322406,321751-321865,320769-321422,320380-320457,320252-320296,320041-320145	AT1G01930.1  CDS  gene_syn F22M8.6, F22M8_6  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc finger protein-related  note zinc finger protein-related; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Ankyrin (InterPro:IPR002110); Has 1722 Blast hits to 1411 proteins in 265 species: Archae - 1; Bacteria - 222; Metazoa - 535; Fungi - 306; Plants - 79; Viruses - 11; Other Eukaryotes - 568 (source: NCBI BLink).  protein_id AT1G01930.1p  transcript_id AT1G01930.1  protein_id AT1G01930.1p  transcript_id AT1G01930.1  
At1g01940	chr1:000323082	0.0	W/323082-323084,323208-323282,323679-323840,324258-324416,324636-324719	AT1G01940.1  CDS  gene_syn F22M8.7, F22M8_7  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein  note peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein (TAIR:AT5G67530.1); Has 12360 Blast hits to 12299 proteins in 1530 species: Archae - 82; Bacteria - 4014; Metazoa - 2345; Fungi - 959; Plants - 726; Viruses - 0; Other Eukaryotes - 4234 (source: NCBI BLink).  protein_id AT1G01940.1p  transcript_id AT1G01940.1  protein_id AT1G01940.1p  transcript_id AT1G01940.1  
At1g01950	chr1:000325473	0.0	W/325473-325641,325913-326013,326106-326228,326332-326517,326594-326815,326931-327084,327237-327386,327488-327576,327663-327866,328000-328107,328188-328322,328424-328504,328898-329030,329119-329211,329311-329436,329573-329698,329781-329924,330027-330155,330243-330403	AT1G01950.2  CDS  gene_syn ARK2, ARMADILLO REPEAT KINESIN 2, F22M8.8, F22M8_8  gene ARK2  function Encodes a member of the armadillo/beta-catenin repeat kinesin motor family. Mutants have twisted roots due to abnormal cell file rotation; the phenotype is dependent on microtubules.  go_component microtubule associated complex|GO:0005875||IEA  go_component chloroplast|GO:0009507||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function binding|GO:0005488||IEA  go_function ATP binding|GO:0005524||IEA  go_process root development|GO:0048364|17971038|IMP  go_function microtubule motor activity|GO:0003777||ISS  product armadillo/beta-catenin repeat family protein / kinesin motor family protein  note ARMADILLO REPEAT KINESIN 2 (ARK2); FUNCTIONS IN: microtubule motor activity, binding, ATP binding; INVOLVED IN: root development; LOCATED IN: microtubule associated complex, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ARK3 (ARMADILLO REPEAT KINESIN 3); ATP binding / binding / microtubule motor (TAIR:AT1G12430.1).  protein_id AT1G01950.2p  transcript_id AT1G01950.2  protein_id AT1G01950.2p  transcript_id AT1G01950.2  
At1g01950	chr1:000325473	0.0	W/325473-325641,325913-326013,326106-326228,326332-326517,326594-326815,326931-327084,327237-327386,327488-327576,327663-327866,328000-328107,328188-328322,328424-328555,328686-328734,328884-329030,329119-329211,329311-329436,329573-329698,329781-329924,330027-330155,330243-330403	AT1G01950.3  CDS  gene_syn ARK2, ARMADILLO REPEAT KINESIN 2, F22M8.8, F22M8_8  gene ARK2  function Encodes a member of the armadillo/beta-catenin repeat kinesin motor family. Mutants have twisted roots due to abnormal cell file rotation; the phenotype is dependent on microtubules.  go_component microtubule associated complex|GO:0005875||IEA  go_component chloroplast|GO:0009507||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function binding|GO:0005488||IEA  go_function ATP binding|GO:0005524||IEA  go_process root development|GO:0048364|17971038|IMP  go_function microtubule motor activity|GO:0003777||ISS  product armadillo/beta-catenin repeat family protein / kinesin motor family protein  note ARMADILLO REPEAT KINESIN 2 (ARK2); FUNCTIONS IN: microtubule motor activity, binding, ATP binding; INVOLVED IN: root development; LOCATED IN: microtubule associated complex, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ARK3 (ARMADILLO REPEAT KINESIN 3); ATP binding / binding / microtubule motor (TAIR:AT1G12430.1).  protein_id AT1G01950.3p  transcript_id AT1G01950.3  protein_id AT1G01950.3p  transcript_id AT1G01950.3  
At1g01950	chr1:000325473	0.0	W/325473-325641,325913-326013,326106-326228,326332-326517,326594-326815,326931-327084,327237-327386,327488-327576,327663-327866,328000-328107,328188-328322,328424-328555,328898-329030,329119-329211,329311-329436,329573-329698,329781-329924,330027-330155,330243-330403	AT1G01950.1  CDS  gene_syn ARK2, ARMADILLO REPEAT KINESIN 2, F22M8.8, F22M8_8  gene ARK2  function Encodes a member of the armadillo/beta-catenin repeat kinesin motor family. Mutants have twisted roots due to abnormal cell file rotation; the phenotype is dependent on microtubules.  go_component microtubule associated complex|GO:0005875||IEA  go_component chloroplast|GO:0009507||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function binding|GO:0005488||IEA  go_function ATP binding|GO:0005524||IEA  go_process root development|GO:0048364|17971038|IMP  go_function microtubule motor activity|GO:0003777||ISS  product armadillo/beta-catenin repeat family protein / kinesin motor family protein  note ARMADILLO REPEAT KINESIN 2 (ARK2); FUNCTIONS IN: microtubule motor activity, binding, ATP binding; INVOLVED IN: root development; LOCATED IN: microtubule associated complex, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ARK3 (ARMADILLO REPEAT KINESIN 3); ATP binding / binding / microtubule motor (TAIR:AT1G12430.1); Has 15213 Blast hits to 12809 proteins in 498 species: Archae - 49; Bacteria - 483; Metazoa - 7194; Fungi - 1437; Plants - 1421; Viruses - 18; Other Eukaryotes - 4611 (source: NCBI BLink).  protein_id AT1G01950.1p  transcript_id AT1G01950.1  protein_id AT1G01950.1p  transcript_id AT1G01950.1  
At1g01960	chr1:000336417	0.0	C/336417-337582,335916-336233,335419-335773,334899-335321,334471-334763,333905-334178,333129-333628,332724-333045,332276-332633,331534-332183,330830-331423	AT1G01960.1  CDS  gene_syn EDA10, F22M8.9, F22M8_9, embryo sac development arrest 10  gene EDA10  go_function ARF guanyl-nucleotide exchange factor activity|GO:0005086||IEA  go_function binding|GO:0005488||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process megagametogenesis|GO:0009561|15634699|IMP  go_function guanyl-nucleotide exchange factor activity|GO:0005085||ISS  product EDA10 (embryo sac development arrest 10); ARF guanyl-nucleotide exchange factor/ binding / guanyl-nucleotide exchange factor  note embryo sac development arrest 10 (EDA10); FUNCTIONS IN: binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity; INVOLVED IN: megagametogenesis; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904), Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF1981, SEC7 associated (InterPro:IPR015403); BEST Arabidopsis thaliana protein match is: guanine nucleotide exchange family protein (TAIR:AT3G60860.1); Has 2204 Blast hits to 1991 proteins in 178 species: Archae - 0; Bacteria - 26; Metazoa - 1252; Fungi - 425; Plants - 143; Viruses - 0; Other Eukaryotes - 358 (source: NCBI BLink).  protein_id AT1G01960.1p  transcript_id AT1G01960.1  protein_id AT1G01960.1p  transcript_id AT1G01960.1  
At1g01970	chr1:000338538	0.0	W/338538-338987,339126-339905	AT1G01970.1  CDS  gene_syn F22M8.10, F22M8_10  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: NFD5 (NUCLEAR FUSION DEFECTIVE 5) (TAIR:AT1G19520.1); Has 7256 Blast hits to 3017 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 83; Fungi - 5; Plants - 6997; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).  protein_id AT1G01970.1p  transcript_id AT1G01970.1  protein_id AT1G01970.1p  transcript_id AT1G01970.1  
At1g01980	chr1:000340374	0.0	C/340374-341999	AT1G01980.1  CDS  gene_syn ATSEC1A, F22M8.11, F22M8_11, SEC1A, SIMILAR TO ELECTRON CAREER 1A  gene ATSEC1A  function member of Reticuline oxidase-like family  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function electron carrier activity|GO:0009055||ISS  product ATSEC1A; FAD binding / catalytic/ electron carrier/ oxidoreductase  note ATSEC1A; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD binding / catalytic/ electron carrier/ oxidoreductase (TAIR:AT1G11770.1); Has 2470 Blast hits to 2340 proteins in 370 species: Archae - 10; Bacteria - 939; Metazoa - 0; Fungi - 1059; Plants - 363; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).  protein_id AT1G01980.1p  transcript_id AT1G01980.1  protein_id AT1G01980.1p  transcript_id AT1G01980.1  
At1g01990	chr1:000343462	0.0	C/343462-344199	AT1G01990.1  CDS  gene_syn F22M8.12, F22M8_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: chloroplast lumen common family protein (TAIR:AT2G37400.1); Has 16 Blast hits to 16 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01990.1p  transcript_id AT1G01990.1  protein_id AT1G01990.1p  transcript_id AT1G01990.1  
At1g02000	chr1:000346052	0.0	W/346052-347356	AT1G02000.1  CDS  gene_syn F22M8.13, F22M8_13, GAE2, UDP-D-GLUCURONATE 4-EPIMERASE 2  gene GAE2  function UDP-D-glucuronate 4-epimerase  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_component cellular_component|GO:0005575||ND  go_process nucleotide-sugar metabolic process|GO:0009225||ISS  go_function catalytic activity|GO:0003824||ISS  go_function UDP-glucuronate 4-epimerase activity|GO:0050378|15247385|ISS  product GAE2 (UDP-D-GLUCURONATE 4-EPIMERASE 2); UDP-glucuronate 4-epimerase/ catalytic  note UDP-D-GLUCURONATE 4-EPIMERASE 2 (GAE2); FUNCTIONS IN: UDP-glucuronate 4-epimerase activity, catalytic activity; INVOLVED IN: cellular metabolic process, carbohydrate metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: GAE3 (UDP-D-GLUCURONATE 4-EPIMERASE 3); UDP-glucuronate 4-epimerase/ catalytic (TAIR:AT4G00110.1); Has 30897 Blast hits to 30894 proteins in 1698 species: Archae - 472; Bacteria - 14615; Metazoa - 642; Fungi - 282; Plants - 684; Viruses - 31; Other Eukaryotes - 14171 (source: NCBI BLink).  protein_id AT1G02000.1p  transcript_id AT1G02000.1  protein_id AT1G02000.1p  transcript_id AT1G02000.1  
At1g02010	chr1:000348046	0.0	W/348046-348127,348212-348267,348373-348454,348562-348640,348735-348785,348880-348976,349067-349099,349238-349366,349550-349720,349803-349886,350049-350147,350226-350296,350474-350570,350658-350783,350871-350966,351044-351160,351252-351329,351412-351632,351729-351819,351912-352001,352126-352197	AT1G02010.1  CDS  gene_syn SEC1A, SIMILAR TO ELECTRON CAREER 1A  gene SEC1A  function member of KEULE Gene Family  go_process vesicle docking during exocytosis|GO:0006904||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_component cellular_component|GO:0005575||ND  go_process protein secretion|GO:0009306||ISS  go_function protein transporter activity|GO:0008565||ISS  product SEC1A (SIMILAR TO ELECTRON CAREER 1A); protein transporter  note SIMILAR TO ELECTRON CAREER 1A (SEC1A); FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein secretion, vesicle-mediated transport, vesicle docking during exocytosis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); BEST Arabidopsis thaliana protein match is: KEU (keule); protein transporter (TAIR:AT1G12360.1); Has 1278 Blast hits to 1258 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 603; Fungi - 314; Plants - 108; Viruses - 0; Other Eukaryotes - 253 (source: NCBI BLink).  protein_id AT1G02010.1p  transcript_id AT1G02010.1  protein_id AT1G02010.1p  transcript_id AT1G02010.1  
At1g02020	chr1:000353214	0.0	C/353214-354845	AT1G02020.2  CDS  gene_syn T7I23.2, T7I23_2  go_component chloroplast|GO:0009507|18431481|IDA  go_function oxidoreductase activity|GO:0016491||IEA  go_process metabolic process|GO:0008152||ISS  go_function oxidoreductase activity, acting on NADH or NADPH, nitrogenous group as acceptor|GO:0016657||ISS  product nitroreductase family protein  note nitroreductase family protein; FUNCTIONS IN: oxidoreductase activity, acting on NADH or NADPH, nitrogenous group as acceptor, oxidoreductase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nitroreductase (InterPro:IPR000415); Has 403 Blast hits to 394 proteins in 182 species: Archae - 64; Bacteria - 312; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G02020.2p  transcript_id AT1G02020.2  protein_id AT1G02020.2p  transcript_id AT1G02020.2  
At1g02020	chr1:000353238	0.0	C/353238-354845,352842-353162	AT1G02020.1  CDS  gene_syn T7I23.2, T7I23_2  go_component chloroplast|GO:0009507|18431481|IDA  go_function oxidoreductase activity|GO:0016491||IEA  go_process metabolic process|GO:0008152||ISS  go_function oxidoreductase activity, acting on NADH or NADPH, nitrogenous group as acceptor|GO:0016657||ISS  product nitroreductase family protein  note nitroreductase family protein; FUNCTIONS IN: oxidoreductase activity, acting on NADH or NADPH, nitrogenous group as acceptor, oxidoreductase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nitroreductase (InterPro:IPR000415); Has 465 Blast hits to 402 proteins in 182 species: Archae - 87; Bacteria - 350; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G02020.1p  transcript_id AT1G02020.1  protein_id AT1G02020.1p  transcript_id AT1G02020.1  
At1g02030	chr1:000355385	0.0	C/355385-356188	AT1G02030.1  CDS  gene_syn T7I23.3, T7I23_3  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT3G60580.1); Has 2466 Blast hits to 2097 proteins in 119 species: Archae - 0; Bacteria - 2; Metazoa - 1830; Fungi - 19; Plants - 535; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT1G02030.1p  transcript_id AT1G02030.1  protein_id AT1G02030.1p  transcript_id AT1G02030.1  
At1g02040	chr1:000358104	0.0	C/358104-359078	AT1G02040.1  CDS  gene_syn T7I23.24, T7I23_24  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT4G35280.1); Has 5788 Blast hits to 3289 proteins in 256 species: Archae - 2; Bacteria - 122; Metazoa - 2935; Fungi - 454; Plants - 650; Viruses - 258; Other Eukaryotes - 1367 (source: NCBI BLink).  protein_id AT1G02040.1p  transcript_id AT1G02040.1  protein_id AT1G02040.1p  transcript_id AT1G02040.1  
At1g02050	chr1:000360240	0.0	C/360240-360441,359164-360149	AT1G02050.1  CDS  gene_syn T7I23.4, T7I23_4  go_function catalytic activity|GO:0003824||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_process phenylpropanoid biosynthetic process|GO:0009699||ISS  go_process pollen exine formation|GO:0010584||IMP  product chalcone and stilbene synthase family protein  note chalcone and stilbene synthase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: phenylpropanoid biosynthetic process, pollen exine formation; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone/stilbene synthase, N-terminal (InterPro:IPR001099), Thiolase-like (InterPro:IPR016039), Polyketide synthase, type III (InterPro:IPR011141), Thiolase-like, subgroup (InterPro:IPR016038), Chalcone and stilbene synthases, C-terminal (InterPro:IPR012328); BEST Arabidopsis thaliana protein match is: chalcone and stilbene synthase family protein (TAIR:AT4G00040.1); Has 4641 Blast hits to 4636 proteins in 1083 species: Archae - 0; Bacteria - 1519; Metazoa - 0; Fungi - 48; Plants - 2843; Viruses - 0; Other Eukaryotes - 231 (source: NCBI BLink).  protein_id AT1G02050.1p  transcript_id AT1G02050.1  protein_id AT1G02050.1p  transcript_id AT1G02050.1  
At1g02060	chr1:000360918	0.0	C/360918-363050	AT1G02060.1  CDS  gene_syn T7I23.14, T7I23_14  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G37230.1); Has 18912 Blast hits to 5842 proteins in 180 species: Archae - 4; Bacteria - 22; Metazoa - 373; Fungi - 390; Plants - 17444; Viruses - 0; Other Eukaryotes - 679 (source: NCBI BLink).  protein_id AT1G02060.1p  transcript_id AT1G02060.1  protein_id AT1G02060.1p  transcript_id AT1G02060.1  
At1g02065	chr1:000365625	0.0	W/365625-366325,366723-366859,366986-367149	AT1G02065.1  CDS  gene_syn SPL8, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8  gene SPL8  function Encodes an SBP-box gene, a member of the SPL gene family. Mutants are affected in micro- and megasporogenesis, trichome formation on sepals, and stamen filament elongation.  go_component nucleus|GO:0005634|12671094|ISS  go_component nucleus|GO:0005634||ISS  go_process megasporogenesis|GO:0009554|12671094|IMP  go_process microsporogenesis|GO:0009556|12671094|IMP  go_function DNA binding|GO:0003677|12671094|ISS  go_function DNA binding|GO:0003677||ISS  product SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8); DNA binding  note SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8 (SPL8); FUNCTIONS IN: DNA binding; INVOLVED IN: microsporogenesis, megasporogenesis; LOCATED IN: nucleus; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-binding protein-like 6 (SPL6) (TAIR:AT1G69170.1); Has 611 Blast hits to 582 proteins in 41 species: Archae - 0; Bacteria - 2; Metazoa - 62; Fungi - 4; Plants - 531; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G02065.1p  transcript_id AT1G02065.1  protein_id AT1G02065.1p  transcript_id AT1G02065.1  
At1g02065	chr1:000365625	0.0	W/365625-366365	AT1G02065.2  CDS  gene_syn SPL8, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8  gene SPL8  function Encodes an SBP-box gene, a member of the SPL gene family. Mutants are affected in micro- and megasporogenesis, trichome formation on sepals, and stamen filament elongation.  go_component nucleus|GO:0005634|12671094|ISS  go_component nucleus|GO:0005634||ISS  go_process megasporogenesis|GO:0009554|12671094|IMP  go_process microsporogenesis|GO:0009556|12671094|IMP  go_function DNA binding|GO:0003677|12671094|ISS  go_function DNA binding|GO:0003677||ISS  product SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8); DNA binding  note SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8 (SPL8); FUNCTIONS IN: DNA binding; INVOLVED IN: microsporogenesis, megasporogenesis; LOCATED IN: nucleus; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9); transcription factor (TAIR:AT2G42200.1); Has 470 Blast hits to 470 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 4; Plants - 440; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G02065.2p  transcript_id AT1G02065.2  protein_id AT1G02065.2p  transcript_id AT1G02065.2  
At1g02070	chr1:000370859	0.0	C/370859-370947,370445-370751	AT1G02070.1  CDS  gene_syn T7I23.30, T7I23_30  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60520.1); Has 52 Blast hits to 52 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G02070.1p  transcript_id AT1G02070.1  protein_id AT1G02070.1p  transcript_id AT1G02070.1  
At1g02074	chr1:000372064	0.0	W/372064-372210	AT1G02074.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G02074.1p  transcript_id AT1G02074.1  protein_id AT1G02074.1p  transcript_id AT1G02074.1  
At1g02080	chr1:000373694	0.0	W/373694-373786,373892-374189,374272-374500,374583-374922,375122-375238,375325-375453,375528-375719,375808-376002,376114-376251,376352-376474,376562-376815,376925-377028,377211-377305,377391-377615,377881-378036,378119-378191,378298-378365,378504-378649,378746-378854,378943-379089,379183-379230,379305-379433,379528-379770,379866-380003,380089-380174,380270-380375,380602-380697,380846-380998,381150-381332,381405-381634,381730-381832,381912-382040,382127-382171,382373-382567,382803-382929,383030-383130,383395-383529,383608-383688,384084-384230,384318-384449,384558-384605,384694-384840,384908-384969,385171-385324,385432-385623,385713-385817,385909-386043,386133-386333,386428-386682	AT1G02080.1  CDS  gene_syn T7I23.15, T7I23_15  go_component membrane|GO:0016020|17432890|IDA  go_function transcription regulator activity|GO:0030528||ISS  product transcriptional regulator-related  note transcriptional regulator-related; FUNCTIONS IN: transcription regulator activity; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CCR4-Not complex component, Not1 (InterPro:IPR007196); Has 1072 Blast hits to 502 proteins in 170 species: Archae - 0; Bacteria - 115; Metazoa - 354; Fungi - 245; Plants - 79; Viruses - 0; Other Eukaryotes - 279 (source: NCBI BLink).  protein_id AT1G02080.1p  transcript_id AT1G02080.1  protein_id AT1G02080.1p  transcript_id AT1G02080.1  
At1g02090	chr1:000389410	0.0	C/389410-389568,389226-389301,389050-389138,388851-388940,388716-388760,388539-388609,388223-388406	AT1G02090.3  CDS  gene_syn ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, ATCSN7, CONSTITUTIVE PHOTOMORPHOGENIC 15, COP15, COP9 SIGNALOSOME SUBUNIT 7, CSN7, FUS5, FUSCA 5, T7I23.25, T7I23_25  gene FUS5  function encodes a phosphoprotein that is a subunit of the COP9 signalosome. Mutants exhibit constitutive photomorphogenic phenotype.  go_component nucleus|GO:0005634|10330469|ISS  go_component signalosome|GO:0008180|11019806|TAS  go_component signalosome|GO:0008180|9707402|IPI  go_process photomorphogenesis|GO:0009640|11019806|TAS  go_process signalosome assembly|GO:0010387|17307927|IMP  go_process cullin deneddylation|GO:0010388|17307927|IMP  go_function MAP kinase kinase activity|GO:0004708|10330469|ISS  product FUS5 (FUSCA 5); MAP kinase kinase  note FUSCA 5 (FUS5); FUNCTIONS IN: MAP kinase kinase activity; INVOLVED IN: cullin deneddylation, signalosome assembly, photomorphogenesis; LOCATED IN: signalosome, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component region PCI (InterPro:IPR000717); Has 508 Blast hits to 508 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 347; Fungi - 94; Plants - 43; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT1G02090.3p  transcript_id AT1G02090.3  protein_id AT1G02090.3p  transcript_id AT1G02090.3  
At1g02090	chr1:000389410	0.0	C/389410-389568,389226-389301,389050-389138,388851-388940,388716-388760,388539-388609,388268-388406,387584-387672,387479-387503	AT1G02090.1  CDS  gene_syn ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, ATCSN7, CONSTITUTIVE PHOTOMORPHOGENIC 15, COP15, COP9 SIGNALOSOME SUBUNIT 7, CSN7, FUS5, FUSCA 5, T7I23.25, T7I23_25  gene FUS5  function encodes a phosphoprotein that is a subunit of the COP9 signalosome. Mutants exhibit constitutive photomorphogenic phenotype.  go_component nucleus|GO:0005634|10330469|ISS  go_component signalosome|GO:0008180|11019806|TAS  go_component signalosome|GO:0008180|9707402|IPI  go_process photomorphogenesis|GO:0009640|11019806|TAS  go_process signalosome assembly|GO:0010387|17307927|IMP  go_process cullin deneddylation|GO:0010388|17307927|IMP  go_function MAP kinase kinase activity|GO:0004708|10330469|ISS  product FUS5 (FUSCA 5); MAP kinase kinase  note FUSCA 5 (FUS5); FUNCTIONS IN: MAP kinase kinase activity; INVOLVED IN: cullin deneddylation, signalosome assembly, photomorphogenesis; LOCATED IN: signalosome, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component region PCI (InterPro:IPR000717); Has 510 Blast hits to 510 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 347; Fungi - 96; Plants - 43; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT1G02090.1p  transcript_id AT1G02090.1  protein_id AT1G02090.1p  transcript_id AT1G02090.1  
At1g02090	chr1:000389410	0.0	C/389410-389568,389226-389301,389050-389138,388851-388940,388716-388760,388539-388609,388268-388406,387647-387655	AT1G02090.2  CDS  gene_syn ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, ATCSN7, CONSTITUTIVE PHOTOMORPHOGENIC 15, COP15, COP9 SIGNALOSOME SUBUNIT 7, CSN7, FUS5, FUSCA 5, T7I23.25, T7I23_25  gene FUS5  function encodes a phosphoprotein that is a subunit of the COP9 signalosome. Mutants exhibit constitutive photomorphogenic phenotype.  go_component nucleus|GO:0005634|10330469|ISS  go_component signalosome|GO:0008180|11019806|TAS  go_component signalosome|GO:0008180|9707402|IPI  go_process photomorphogenesis|GO:0009640|11019806|TAS  go_process signalosome assembly|GO:0010387|17307927|IMP  go_process cullin deneddylation|GO:0010388|17307927|IMP  go_function MAP kinase kinase activity|GO:0004708|10330469|ISS  product FUS5 (FUSCA 5); MAP kinase kinase  note FUSCA 5 (FUS5); FUNCTIONS IN: MAP kinase kinase activity; INVOLVED IN: cullin deneddylation, signalosome assembly, photomorphogenesis; LOCATED IN: signalosome, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component region PCI (InterPro:IPR000717); Has 508 Blast hits to 508 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 347; Fungi - 94; Plants - 43; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT1G02090.2p  transcript_id AT1G02090.2  protein_id AT1G02090.2p  transcript_id AT1G02090.2  
At1g02100	chr1:000389876	0.0	W/389876-389943,390037-390250,390352-390399,390483-390564,390762-390864,391003-391123,391216-391263,391458-391541,391652-391716,392021-392072,392262-392300,392374-392448	AT1G02100.1  CDS  gene_syn T7I23.16, T7I23_16  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function methyltransferase activity|GO:0008168||ISS  product leucine carboxyl methyltransferase family protein  note leucine carboxyl methyltransferase family protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Leucine carboxyl methyltransferase, LCTM1 1 (InterPro:IPR016651), Leucine carboxyl methyltransferase (InterPro:IPR007213); Has 455 Blast hits to 446 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 165; Fungi - 191; Plants - 22; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT1G02100.1p  transcript_id AT1G02100.1  protein_id AT1G02100.1p  transcript_id AT1G02100.1  
At1g02100	chr1:000389876	0.0	W/389876-389943,390037-390250,390352-390399,390483-390564,390762-390864,391003-391123,391216-391263,391458-391541,391652-391716,392021-392072,392262-392300,392374-392448	AT1G02100.3  CDS  gene_syn T7I23.16, T7I23_16  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function methyltransferase activity|GO:0008168||ISS  product leucine carboxyl methyltransferase family protein  note leucine carboxyl methyltransferase family protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Leucine carboxyl methyltransferase, LCTM1 1 (InterPro:IPR016651), Leucine carboxyl methyltransferase (InterPro:IPR007213); Has 455 Blast hits to 446 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 165; Fungi - 191; Plants - 22; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT1G02100.3p  transcript_id AT1G02100.3  protein_id AT1G02100.3p  transcript_id AT1G02100.3  
At1g02100	chr1:000389876	0.0	W/389876-389943,390037-390250,390352-390399,390483-390564,390762-390864,391003-391123,391216-391263,391458-391541,391652-391716,392021-392076,392262-392293	AT1G02100.2  CDS  gene_syn T7I23.16, T7I23_16  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function methyltransferase activity|GO:0008168||ISS  product leucine carboxyl methyltransferase family protein  note leucine carboxyl methyltransferase family protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Leucine carboxyl methyltransferase, LCTM1 1 (InterPro:IPR016651), Leucine carboxyl methyltransferase (InterPro:IPR007213); Has 451 Blast hits to 446 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 191; Plants - 22; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT1G02100.2p  transcript_id AT1G02100.2  protein_id AT1G02100.2p  transcript_id AT1G02100.2  
At1g02110	chr1:000392939	0.0	W/392939-393875,393966-394153,394228-394297,394370-394451,394672-395434	AT1G02110.1  CDS  gene_syn T7I23.5, T7I23_5  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function molecular_function|GO:0003674||ND  product proline-rich family protein  note proline-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT3G60320.1); Has 562 Blast hits to 489 proteins in 95 species: Archae - 0; Bacteria - 19; Metazoa - 68; Fungi - 68; Plants - 340; Viruses - 13; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT1G02110.1p  transcript_id AT1G02110.1  protein_id AT1G02110.1p  transcript_id AT1G02110.1  
At1g02120	chr1:000395761	0.0	W/395761-395946,396029-396088,396167-396217,396291-396356,396439-396534,396609-396725,396793-396863,396941-397098,397703-397743,397877-397964,398065-398151,398292-398346,398460-398526,398614-398713,398905-398966,399068-399110,399182-399393,399484-399720	AT1G02120.1  CDS  gene_syn T7I23.28, T7I23_28, VAD1, VASCULAR ASSOCIATED DEATH1  gene VAD1  function Encodes VAD1 (Vascular Associated Death1), a regulator of cell death and defense responses in vascular tissues. VAD1 is a putative membrane associated protein and contains a GRAM domain. vad1 is a lesion mimic mutant that exhibits light conditional appearance of propagative HR (hypersensitive response)-like lesions along the vascular system.  go_component chloroplast|GO:0009507||IEA  go_process defense response to bacterium|GO:0042742|15269331|IMP  go_process negative regulation of programmed cell death|GO:0043069|15269331|IMP  product VAD1 (VASCULAR ASSOCIATED DEATH1)  note VASCULAR ASSOCIATED DEATH1 (VAD1); INVOLVED IN: defense response to bacterium, negative regulation of programmed cell death; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein / GRAM domain-containing protein (TAIR:AT3G59660.1); Has 860 Blast hits to 758 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 522; Fungi - 152; Plants - 71; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).  protein_id AT1G02120.1p  transcript_id AT1G02120.1  protein_id AT1G02120.1p  transcript_id AT1G02120.1  
At1g02130	chr1:000401775	0.0	C/401775-401788,401595-401667,401461-401508,401323-401370,401164-401235,400931-401086,400725-400828,400350-400446	AT1G02130.1  CDS  gene_syn ARA-5, ARA5, ARABIDOPSIS RAS 5, ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ATRAB1B, ATRABD2A, RAB D2A, RABD2A, T7I23.6, T7I23_6  gene ARA-5  function Belongs to the Rab1 GTPase subfamily. This small GTP-binding protein is required in ER to Golgi transportation.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function GTP binding|GO:0005525||IEA  go_process ER to Golgi vesicle-mediated transport|GO:0006888|11090219|IDA  go_process ER to Golgi vesicle-mediated transport|GO:0006888|11090219|IMP  go_function GTP binding|GO:0005525||ISS  product ARA-5 (ARABIDOPSIS RAS 5); GTP binding  note ARABIDOPSIS RAS 5 (ARA-5); FUNCTIONS IN: GTP binding; INVOLVED IN: response to cadmium ion, ER to Golgi vesicle-mediated transport; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: ATRAB1A; GTP binding (TAIR:AT5G47200.1); Has 24211 Blast hits to 24160 proteins in 664 species: Archae - 21; Bacteria - 120; Metazoa - 13529; Fungi - 2916; Plants - 2286; Viruses - 19; Other Eukaryotes - 5320 (source: NCBI BLink).  protein_id AT1G02130.1p  transcript_id AT1G02130.1  protein_id AT1G02130.1p  transcript_id AT1G02130.1  
At1g02136	chr1:000402693	0.0	C/402693-402961	AT1G02136.1  pseudogenic_transcript  pseudo  function pseudogene of phagocytosis and cell motility protein  
At1g02140	chr1:000404186	0.0	C/404186-404401,403771-403947,403467-403526	AT1G02140.1  CDS  gene_syn HAP1, HAPLESS 1, MAGO, MAGO NASHI, MATERNAL EFFECT EMBRYO ARREST 63, MEE63, T7I23.7, T7I23_7  gene MAGO  go_component nucleolus|GO:0005730|15496452|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component nucleus|GO:0005634||ISS  go_component nucleoplasm|GO:0005654|15496452|IDA  go_component nuclear speck|GO:0016607|16953428|IDA  go_component exon-exon junction complex|GO:0035145|16953428|IPI  go_process sex determination|GO:0007530||ISS  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process pollen tube guidance|GO:0010183|15514068|IMP  go_function protein binding|GO:0005515|16953428|IPI  product MAGO (MAGO NASHI); protein binding  note MAGO NASHI (MAGO); FUNCTIONS IN: protein binding; INVOLVED IN: embryonic development ending in seed dormancy, pollen tube guidance, sex determination; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mago nashi protein (InterPro:IPR004023); Has 348 Blast hits to 348 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 176; Fungi - 64; Plants - 47; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT1G02140.1p  transcript_id AT1G02140.1  protein_id AT1G02140.1p  transcript_id AT1G02140.1  
At1g02145	chr1:000404627	0.0	W/404627-404669,404757-404842,404912-404953,405065-405110,405230-405316,405430-405485,405648-405765,405893-405951,406061-406132,406247-406310,406415-406518,406721-406792,406903-406989,407080-407147,407321-407389,407468-407550,407722-407821,408073-408138,408236-408329,408408-408485	AT1G02145.3  CDS  go_component endomembrane system|GO:0012505||IEA  go_component intrinsic to endoplasmic reticulum membrane|GO:0031227||IEA  go_process GPI anchor biosynthetic process|GO:0006506||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||IEA  product transferase, transferring glycosyl groups  note transferase, transferring glycosyl groups; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: endomembrane system, intrinsic to endoplasmic reticulum membrane; CONTAINS InterPro DOMAIN/s: Alg9-like mannosyltransferase (InterPro:IPR005599); BEST Arabidopsis thaliana protein match is: mannosyltransferase, putative (TAIR:AT5G14850.2); Has 588 Blast hits to 578 proteins in 128 species: Archae - 0; Bacteria - 10; Metazoa - 273; Fungi - 191; Plants - 61; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT1G02145.3p  transcript_id AT1G02145.3  protein_id AT1G02145.3p  transcript_id AT1G02145.3  
At1g02145	chr1:000404627	0.0	W/404627-404669,404757-404842,404912-404953,405065-405110,405242-405316,405430-405485,405648-405765,405893-405951,406061-406132,406247-406310,406415-406518,406721-406792,406903-406989,407080-407147,407321-407389,407468-407550,407722-407821,408073-408138,408236-408329,408408-408485	AT1G02145.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_component intrinsic to endoplasmic reticulum membrane|GO:0031227||IEA  go_process GPI anchor biosynthetic process|GO:0006506||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||IEA  product transferase, transferring glycosyl groups  note transferase, transferring glycosyl groups; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: endomembrane system, intrinsic to endoplasmic reticulum membrane; CONTAINS InterPro DOMAIN/s: Alg9-like mannosyltransferase (InterPro:IPR005599); BEST Arabidopsis thaliana protein match is: mannosyltransferase, putative (TAIR:AT5G14850.2); Has 589 Blast hits to 579 proteins in 128 species: Archae - 0; Bacteria - 10; Metazoa - 273; Fungi - 191; Plants - 61; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT1G02145.1p  transcript_id AT1G02145.1  protein_id AT1G02145.1p  transcript_id AT1G02145.1  
At1g02145	chr1:000404915	0.0	W/404915-404953,405065-405110,405230-405316,405430-405485,405648-405765,405893-405951,406061-406132,406247-406310,406415-406518,406721-406792,406903-406989,407080-407147,407321-407389,407468-407550,407722-407821,408073-408138,408236-408329,408408-408485	AT1G02145.4  CDS  go_component intrinsic to endoplasmic reticulum membrane|GO:0031227||IEA  go_process GPI anchor biosynthetic process|GO:0006506||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||IEA  product transferase, transferring glycosyl groups  note transferase, transferring glycosyl groups; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: intrinsic to endoplasmic reticulum membrane; CONTAINS InterPro DOMAIN/s: Alg9-like mannosyltransferase (InterPro:IPR005599); BEST Arabidopsis thaliana protein match is: mannosyltransferase, putative (TAIR:AT5G14850.2); Has 587 Blast hits to 577 proteins in 128 species: Archae - 0; Bacteria - 10; Metazoa - 274; Fungi - 189; Plants - 61; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT1G02145.4p  transcript_id AT1G02145.4  protein_id AT1G02145.4p  transcript_id AT1G02145.4  
At1g02145	chr1:000404915	0.0	W/404915-404953,405065-405110,405230-405316,405430-405485,405648-405765,405893-405951,406061-406132,406247-406310,406415-406518,407535-407550,407722-407821,408073-408138,408236-408329,408408-408485	AT1G02145.2  CDS  go_component intrinsic to endoplasmic reticulum membrane|GO:0031227||IEA  go_process GPI anchor biosynthetic process|GO:0006506||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||IEA  product transferase, transferring glycosyl groups  note transferase, transferring glycosyl groups; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: intrinsic to endoplasmic reticulum membrane; CONTAINS InterPro DOMAIN/s: Alg9-like mannosyltransferase (InterPro:IPR005599); Has 282 Blast hits to 244 proteins in 111 species: Archae - 0; Bacteria - 2; Metazoa - 129; Fungi - 86; Plants - 36; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G02145.2p  transcript_id AT1G02145.2  protein_id AT1G02145.2p  transcript_id AT1G02145.2  
At1g02150	chr1:000408779	0.0	W/408779-409138,409219-410433	AT1G02150.1  CDS  gene_syn T6A9.13  go_component chloroplast|GO:0009507|18431481|IDA  go_function binding|GO:0005488||IEA  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G02820.1); Has 5042 Blast hits to 2597 proteins in 108 species: Archae - 0; Bacteria - 2; Metazoa - 25; Fungi - 66; Plants - 4783; Viruses - 0; Other Eukaryotes - 166 (source: NCBI BLink).  protein_id AT1G02150.1p  transcript_id AT1G02150.1  protein_id AT1G02150.1p  transcript_id AT1G02150.1  
At1g02160	chr1:000410803	0.0	W/410803-410893,411177-411253,411336-411383	AT1G02160.1  CDS  gene_syn T6A9.18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625); Has 45 Blast hits to 45 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 29; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G02160.1p  transcript_id AT1G02160.1  protein_id AT1G02160.1p  transcript_id AT1G02160.1  
At1g02160	chr1:000410803	0.0	W/410803-410893,411177-411361	AT1G02160.2  CDS  gene_syn T6A9.18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: MTCP1 (InterPro:IPR009069), CHCH (InterPro:IPR010625); Has 27 Blast hits to 27 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 16; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G02160.2p  transcript_id AT1G02160.2  protein_id AT1G02160.2p  transcript_id AT1G02160.2  
At1g02170	chr1:000411883	0.0	W/411883-412258,412460-412790,412883-413003,413080-413295,413367-413426	AT1G02170.1  CDS  gene_syn AMC1, ARABIDOPSIS THALIANA METACASPASE 1, ARABIDOPSIS THALIANA METACASPASE 1B, ATMC1, ATMCPB1, LOL3, LSD ONE LIKE 3, MCP1B, METACASPASE 1, T6A9.24  gene AMC1  function Metacaspase AtMCP1b. Arginine/lysine-specific cysteine protease activity. Induces apoptosis in yeast. Contains Pfam profile PF00656: ICE-like protease (caspase) p20 domain  go_component chloroplast|GO:0009507||IEA  go_process proteolysis|GO:0006508||ISS  go_process induction of apoptosis|GO:0006917|15691845|IDA  go_function cysteine-type endopeptidase activity|GO:0004197|15691845|IDA  product AMC1 (METACASPASE 1); cysteine-type endopeptidase  note METACASPASE 1 (AMC1); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis, induction of apoptosis; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600), Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: AtMC2 (metacaspase 2); cysteine-type endopeptidase (TAIR:AT4G25110.1); Has 828 Blast hits to 807 proteins in 199 species: Archae - 2; Bacteria - 188; Metazoa - 3; Fungi - 193; Plants - 255; Viruses - 0; Other Eukaryotes - 187 (source: NCBI BLink).  protein_id AT1G02170.1p  transcript_id AT1G02170.1  protein_id AT1G02170.1p  transcript_id AT1G02170.1  
At1g02180	chr1:000414424	0.0	C/414424-414505,413619-414217	AT1G02180.1  CDS  gene_syn T6A9.14  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ferredoxin-related  note ferredoxin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 20 Blast hits to 20 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G02180.1p  transcript_id AT1G02180.1  protein_id AT1G02180.1p  transcript_id AT1G02180.1  
At1g02190	chr1:000415154	0.0	W/415154-415670,415742-415961,416045-416435,416731-416838,416962-417162,417248-417520,417623-417796	AT1G02190.1  CDS  gene_syn T6A9.15  go_component endoplasmic reticulum|GO:0005783||IEA  go_process fatty acid biosynthetic process|GO:0006633||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function catalytic activity|GO:0003824||ISS  product CER1 protein, putative  note CER1 protein, putative; FUNCTIONS IN: oxidoreductase activity, iron ion binding, catalytic activity; INVOLVED IN: oxidation reduction, fatty acid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: catalytic/ iron ion binding / oxidoreductase (TAIR:AT2G37700.1); Has 1933 Blast hits to 1933 proteins in 393 species: Archae - 0; Bacteria - 634; Metazoa - 240; Fungi - 255; Plants - 298; Viruses - 2; Other Eukaryotes - 504 (source: NCBI BLink).  protein_id AT1G02190.1p  transcript_id AT1G02190.1  protein_id AT1G02190.1p  transcript_id AT1G02190.1  
At1g02190	chr1:000415154	0.0	W/415154-415670,415742-415961,416045-416435,416743-416838,416962-417162,417248-417520,417623-417796	AT1G02190.2  CDS  gene_syn T6A9.15  go_component endoplasmic reticulum|GO:0005783||IEA  go_process fatty acid biosynthetic process|GO:0006633||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function catalytic activity|GO:0003824||ISS  product CER1 protein, putative  note CER1 protein, putative; FUNCTIONS IN: oxidoreductase activity, iron ion binding, catalytic activity; INVOLVED IN: oxidation reduction, fatty acid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: catalytic/ iron ion binding / oxidoreductase (TAIR:AT2G37700.1); Has 1933 Blast hits to 1933 proteins in 393 species: Archae - 0; Bacteria - 634; Metazoa - 240; Fungi - 255; Plants - 298; Viruses - 2; Other Eukaryotes - 504 (source: NCBI BLink).  protein_id AT1G02190.2p  transcript_id AT1G02190.2  protein_id AT1G02190.2p  transcript_id AT1G02190.2  
At1g02205	chr1:000418818	0.0	W/418818-418877,418987-419210,419297-419529,419675-419894,420514-420889,420984-421091,421191-421391,421526-421633,421735-421908,421981-422154	AT1G02205.2  CDS  gene_syn AT1G02200, CER1, ECERIFERUM 1, POSSIBLE ALDEHYDE DECARBONYLASE, T6A9.16  gene CER1  function Expression of the CER1 gene associated with production of stem epicuticular wax and pollen fertility. Biochemical studies showed that cer1 mutants are blocked in the conversion of stem wax C30 aldehydes to C29 alkanes, and they also lack the secondary alcohols and ketones. These suggested the CER1 protein is a aldehyde decarbonylase.  go_component endoplasmic reticulum|GO:0005783||IEA  go_process wax biosynthetic process|GO:0010025|8718622|IMP  go_process wax biosynthetic process|GO:0010025||IMP  go_process cuticle development|GO:0042335|8718622|IMP  go_function octadecanal decarbonylase activity|GO:0009924|8718622|IMP  product CER1 (ECERIFERUM 1); octadecanal decarbonylase  note ECERIFERUM 1 (CER1); FUNCTIONS IN: octadecanal decarbonylase activity; INVOLVED IN: wax biosynthetic process, cuticle development; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: CER1 protein, putative (TAIR:AT1G02190.1); Has 2025 Blast hits to 2023 proteins in 391 species: Archae - 0; Bacteria - 593; Metazoa - 230; Fungi - 260; Plants - 350; Viruses - 2; Other Eukaryotes - 590 (source: NCBI BLink).  protein_id AT1G02205.2p  transcript_id AT1G02205.2  protein_id AT1G02205.2p  transcript_id AT1G02205.2  
At1g02205	chr1:000419650	0.0	W/419650-419894,420514-420889,420984-421091,421191-421391,421526-421633,421735-421908,421981-422154	AT1G02205.1  CDS  gene_syn AT1G02200, CER1, ECERIFERUM 1, POSSIBLE ALDEHYDE DECARBONYLASE, T6A9.16  gene CER1  function Expression of the CER1 gene associated with production of stem epicuticular wax and pollen fertility. Biochemical studies showed that cer1 mutants are blocked in the conversion of stem wax C30 aldehydes to C29 alkanes, and they also lack the secondary alcohols and ketones. These suggested the CER1 protein is a aldehyde decarbonylase.  go_component endoplasmic reticulum|GO:0005783||IEA  go_component endomembrane system|GO:0012505||IEA  go_process wax biosynthetic process|GO:0010025|8718622|IMP  go_process wax biosynthetic process|GO:0010025||IMP  go_process cuticle development|GO:0042335|8718622|IMP  go_function octadecanal decarbonylase activity|GO:0009924|8718622|IMP  product CER1 (ECERIFERUM 1); octadecanal decarbonylase  note ECERIFERUM 1 (CER1); FUNCTIONS IN: octadecanal decarbonylase activity; INVOLVED IN: wax biosynthetic process, cuticle development; LOCATED IN: endomembrane system, endoplasmic reticulum; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: CER1 protein, putative (TAIR:AT1G02190.1); Has 226 Blast hits to 226 proteins in 34 species: Archae - 0; Bacteria - 30; Metazoa - 0; Fungi - 0; Plants - 185; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G02205.1p  transcript_id AT1G02205.1  protein_id AT1G02205.1p  transcript_id AT1G02205.1  
At1g02210	chr1:000427548	0.0	C/427548-427811	AT1G02210.1  CDS  gene_syn T6A9.33  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  product regulator of shoot apical meristem-related  note regulator of shoot apical meristem-related; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC004 (Arabidopsis NAC domain containing protein 4); transcription factor (TAIR:AT1G02230.1); Has 256 Blast hits to 256 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 256; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G02210.1p  transcript_id AT1G02210.1  protein_id AT1G02210.1p  transcript_id AT1G02210.1  
At1g02220	chr1:000430414	0.0	C/430414-430567,430069-430316,429851-429997,429462-429776,429248-429370,428902-429099	AT1G02220.1  CDS  gene_syn ANAC003, Arabidopsis NAC domain containing protein 3, T6A9.17  gene ANAC003  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ANAC003 (Arabidopsis NAC domain containing protein 3); transcription factor  note Arabidopsis NAC domain containing protein 3 (ANAC003); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac048 (Arabidopsis NAC domain containing protein 48); transcription factor (TAIR:AT3G04420.1); Has 1364 Blast hits to 1360 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1362; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G02220.1p  transcript_id AT1G02220.1  protein_id AT1G02220.1p  transcript_id AT1G02220.1  
At1g02228	chr1:000433031	0.0	C/433031-433819	AT1G02228.1  mRNA_TE_gene  pseudo  function pseudogene of no apical meristem (NAM) family protein  note Transposable element gene  
At1g02230	chr1:000436622	0.0	C/436622-436775,436277-436539,435997-436128,435650-435916,435450-435563,435174-435323	AT1G02230.1  CDS  gene_syn ANAC004, Arabidopsis NAC domain containing protein 4, T6A9.19  gene ANAC004  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ANAC004 (Arabidopsis NAC domain containing protein 4); transcription factor  note Arabidopsis NAC domain containing protein 4 (ANAC004); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac005 (Arabidopsis NAC domain containing protein 5); transcription factor (TAIR:AT1G02250.1); Has 1464 Blast hits to 1455 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 1452; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G02230.1p  transcript_id AT1G02230.1  protein_id AT1G02230.1p  transcript_id AT1G02230.1  
At1g02250	chr1:000439406	0.0	C/439406-439559,439052-439314,438783-438887,438422-438679,438218-438334,437951-438106	AT1G02250.1  CDS  gene_syn Arabidopsis NAC domain containing protein 5, T6A9.20, anac005  gene anac005  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac005 (Arabidopsis NAC domain containing protein 5); transcription factor  note Arabidopsis NAC domain containing protein 5 (anac005); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: xylem; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC004 (Arabidopsis NAC domain containing protein 4); transcription factor (TAIR:AT1G02230.1); Has 1424 Blast hits to 1418 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1424; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G02250.1p  transcript_id AT1G02250.1  protein_id AT1G02250.1p  transcript_id AT1G02250.1  
At1g02260	chr1:000441398	0.0	C/441398-442459,441136-441325,440757-441013	AT1G02260.1  CDS  gene_syn T6A9.21  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process citrate transport|GO:0015746||IEA  go_function citrate transmembrane transporter activity|GO:0015137||IEA  go_component integral to membrane|GO:0016021||ISS  go_function transporter activity|GO:0005215||ISS  product transmembrane protein, putative  note transmembrane protein, putative; FUNCTIONS IN: citrate transmembrane transporter activity, transporter activity; INVOLVED IN: citrate transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Divalent ion symporter (InterPro:IPR004680); Has 5612 Blast hits to 3945 proteins in 1017 species: Archae - 185; Bacteria - 4274; Metazoa - 237; Fungi - 56; Plants - 87; Viruses - 2; Other Eukaryotes - 771 (source: NCBI BLink).  protein_id AT1G02260.1p  transcript_id AT1G02260.1  protein_id AT1G02260.1p  transcript_id AT1G02260.1  
At1g02270	chr1:000446030	0.0	C/446030-446197,445844-445942,445648-445752,445454-445559,444846-445066,444683-444759,444489-444597,444258-444383,443979-444089,443629-443736,443301-443525	AT1G02270.1  CDS  gene_syn T6A9.35  go_component nucleus|GO:0005634|14617066|IDA  go_function calcium ion binding|GO:0005509||IEA  go_process response to cold|GO:0009409|14617066|IEP  go_function catalytic activity|GO:0003824||ISS  go_function calcium ion binding|GO:0005509||ISS  product endonuclease/exonuclease/phosphatase family protein / calcium-binding EF hand family protein  note endonuclease/exonuclease/phosphatase family protein / calcium-binding EF hand family protein; FUNCTIONS IN: catalytic activity, calcium ion binding; INVOLVED IN: response to cold; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT5G54130.2); Has 335 Blast hits to 335 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 134; Fungi - 41; Plants - 110; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT1G02270.1p  transcript_id AT1G02270.1  protein_id AT1G02270.1p  transcript_id AT1G02270.1  
At1g02280	chr1:000450151	0.0	C/450151-450246,449939-450046,449714-449838,449225-449489,449055-449123,448812-448973,448665-448733	AT1G02280.1  CDS  gene_syn ATTOC33, PLASTID PROTEIN IMPORT 1, PPI1, T6A9.32, TOC33, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 33  gene TOC33  function Encodes a GTP-binding GTP-ase. Component of the chloroplast protein import machinery. Required for import of POR B into plastids. Toc33 phosphorylation may not play an important role in vivo.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast outer membrane|GO:0009707|10998188|IDA  go_process protein targeting to chloroplast|GO:0045036|9756470|TAS  go_function GTPase activity|GO:0003924|12782294|IDA  go_function protein binding|GO:0005515|15773849|IPI  go_function GTP binding|GO:0005525|12782294|IDA  go_function GTP binding|GO:0005525||ISS  product TOC33 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 33); GTP binding / GTPase/ protein binding  note TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 33 (TOC33); FUNCTIONS IN: protein binding, GTP binding, GTPase activity; INVOLVED IN: protein targeting to chloroplast; LOCATED IN: chloroplast outer membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703), Chloroplast protein import component Toc34 (InterPro:IPR005688); BEST Arabidopsis thaliana protein match is: TOC34 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34); GTP binding (TAIR:AT5G05000.3); Has 709 Blast hits to 702 proteins in 147 species: Archae - 0; Bacteria - 221; Metazoa - 232; Fungi - 11; Plants - 199; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT1G02280.1p  transcript_id AT1G02280.1  protein_id AT1G02280.1p  transcript_id AT1G02280.1  
At1g02280	chr1:000450151	0.0	C/450151-450246,449939-450046,449714-449838,449225-449489,449055-449123,448812-448973,448665-448733	AT1G02280.2  CDS  gene_syn ATTOC33, PLASTID PROTEIN IMPORT 1, PPI1, T6A9.32, TOC33, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 33  gene TOC33  function Encodes a GTP-binding GTP-ase. Component of the chloroplast protein import machinery. Required for import of POR B into plastids. Toc33 phosphorylation may not play an important role in vivo.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast outer membrane|GO:0009707|10998188|IDA  go_process protein targeting to chloroplast|GO:0045036|9756470|TAS  go_function GTPase activity|GO:0003924|12782294|IDA  go_function protein binding|GO:0005515|15773849|IPI  go_function GTP binding|GO:0005525|12782294|IDA  go_function GTP binding|GO:0005525||ISS  product TOC33 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 33); GTP binding / GTPase/ protein binding  note TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 33 (TOC33); FUNCTIONS IN: protein binding, GTP binding, GTPase activity; INVOLVED IN: protein targeting to chloroplast; LOCATED IN: chloroplast outer membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703), Chloroplast protein import component Toc34 (InterPro:IPR005688); BEST Arabidopsis thaliana protein match is: TOC34 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34); GTP binding (TAIR:AT5G05000.3); Has 709 Blast hits to 702 proteins in 147 species: Archae - 0; Bacteria - 221; Metazoa - 232; Fungi - 11; Plants - 199; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT1G02280.2p  transcript_id AT1G02280.2  protein_id AT1G02280.2p  transcript_id AT1G02280.2  
At1g02290	chr1:000450646	0.0	C/450646-451977	AT1G02290.1  CDS  gene_syn T6A9.31  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G45830.1); Has 80 Blast hits to 80 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 43; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G02290.1p  transcript_id AT1G02290.1  protein_id AT1G02290.1p  transcript_id AT1G02290.1  
At1g02300	chr1:000453288	0.0	W/453288-453365,453594-453647,453730-453810,453907-454063,454197-454336,454415-454540,454622-454840,454927-455040,455112-455147,455242-455376	AT1G02300.1  CDS  gene_syn T6A9.28, T7I23.12, T7I23_12  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_process regulation of catalytic activity|GO:0050790||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product cathepsin B-like cysteine protease, putative  note cathepsin B-like cysteine protease, putative; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis, regulation of catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Peptidase C1A, cathepsin B (InterPro:IPR015643), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169), Peptidase C1A, propeptide (InterPro:IPR012599); BEST Arabidopsis thaliana protein match is: cathepsin B-like cysteine protease, putative (TAIR:AT1G02305.1); Has 5732 Blast hits to 5708 proteins in 562 species: Archae - 31; Bacteria - 63; Metazoa - 2761; Fungi - 4; Plants - 1031; Viruses - 129; Other Eukaryotes - 1713 (source: NCBI BLink).  protein_id AT1G02300.1p  transcript_id AT1G02300.1  protein_id AT1G02300.1p  transcript_id AT1G02300.1  
At1g02305	chr1:000455816	0.0	W/455816-455902,456178-456231,456314-456394,456490-456646,456757-456761,456843-456917,457010-457135,457211-457429,457514-457627,457716-457751,457840-457974	AT1G02305.1  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_process proteolysis|GO:0006508||IEA  go_process regulation of catalytic activity|GO:0050790||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product cathepsin B-like cysteine protease, putative  note cathepsin B-like cysteine protease, putative; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis, regulation of catalytic activity; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Peptidase C1A, cathepsin B (InterPro:IPR015643), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169), Peptidase C1A, propeptide (InterPro:IPR012599); BEST Arabidopsis thaliana protein match is: cathepsin B-like cysteine protease, putative (TAIR:AT1G02300.1); Has 5940 Blast hits to 5910 proteins in 586 species: Archae - 35; Bacteria - 87; Metazoa - 2802; Fungi - 4; Plants - 1108; Viruses - 129; Other Eukaryotes - 1775 (source: NCBI BLink).  protein_id AT1G02305.1p  transcript_id AT1G02305.1  protein_id AT1G02305.1p  transcript_id AT1G02305.1  
At1g02310	chr1:000460323	0.0	C/460323-460652,459503-459682,459021-459143,458732-458940,458243-458636	AT1G02310.1  CDS  gene_syn T6A9.1, T6A9_1  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family protein 5 / cellulase family protein / (1-4)-beta-mannan endohydrolase, putative  note glycosyl hydrolase family protein 5 / cellulase family protein / (1-4)-beta-mannan endohydrolase, putative; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, family 5, conserved site (InterPro:IPR018087), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: (1-4)-beta-mannan endohydrolase, putative (TAIR:AT5G66460.1); Has 452 Blast hits to 448 proteins in 121 species: Archae - 4; Bacteria - 114; Metazoa - 4; Fungi - 121; Plants - 186; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G02310.1p  transcript_id AT1G02310.1  protein_id AT1G02310.1p  transcript_id AT1G02310.1  
At1g02320	chr1:000461828	0.0	W/461828-461974	AT1G02320.1  CDS  gene_syn T6A9.30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G02320.1p  transcript_id AT1G02320.1  protein_id AT1G02320.1p  transcript_id AT1G02320.1  
At1g02330	chr1:000463421	0.0	C/463421-463521,463123-463323,462876-462999,462727-462800,462475-462632,462202-462383	AT1G02330.1  CDS  gene_syn T6A9.2, T6A9_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Hepatocellular carcinoma-associated antigen 59 (InterPro:IPR010756); Has 1111 Blast hits to 862 proteins in 155 species: Archae - 2; Bacteria - 54; Metazoa - 381; Fungi - 93; Plants - 45; Viruses - 5; Other Eukaryotes - 531 (source: NCBI BLink).  protein_id AT1G02330.1p  transcript_id AT1G02330.1  protein_id AT1G02330.1p  transcript_id AT1G02330.1  
At1g02335	chr1:000464762	0.0	C/464762-464876,463979-464523	AT1G02335.1  CDS  gene_syn GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 2 PRECURSOR., GL22, T6A9.3  gene GL22  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  product GL22 (GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 2 PRECURSOR.); manganese ion binding / nutrient reservoir  note GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 2 PRECURSOR. (GL22); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; LOCATED IN: endomembrane system, apoplast; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: GLP10 (GERMIN-LIKE PROTEIN 10); manganese ion binding / nutrient reservoir (TAIR:AT3G62020.1); Has 1351 Blast hits to 1293 proteins in 225 species: Archae - 0; Bacteria - 312; Metazoa - 0; Fungi - 63; Plants - 945; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT1G02335.1p  transcript_id AT1G02335.1  protein_id AT1G02335.1p  transcript_id AT1G02335.1  
At1g02340	chr1:000467684	0.0	C/467684-467685,467186-467552,466958-467086,466732-466797,465933-466247	AT1G02340.1  CDS  gene_syn FBI1, HFR1, LONG HYPOCOTYL IN FAR-RED, REDUCED PHYTOCHROME SIGNALING 1, REDUCED SENSITIVITY TO FAR-RED LIGHT 1, REP1, RSF1, T6A9.4, T6A9_4  gene HFR1  function Encodes a light-inducible, nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1, co-localizes to the nuclear specks and is ubiquinated by COP1.  go_component nucleus|GO:0005634|10995393|TAS  go_component nucleus|GO:0005634|15705947|IDA  go_process protein polyubiquitination|GO:0000209|15705947|IDA  go_process signal transduction|GO:0007165|10995393|TAS  go_process red, far-red light phototransduction|GO:0009585|12061902|TAS  go_process response to light intensity|GO:0009642|15705947|IEP  go_process blue light signaling pathway|GO:0009785|15705947|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function protein binding|GO:0005515|15705947|IPI  go_function protein binding|GO:0005515|15960622|IPI  product HFR1 (LONG HYPOCOTYL IN FAR-RED); DNA binding / protein binding / transcription factor  note LONG HYPOCOTYL IN FAR-RED (HFR1); FUNCTIONS IN: protein binding, transcription factor activity, DNA binding; INVOLVED IN: signal transduction, red, far-red light phototransduction, response to light intensity, protein polyubiquitination, blue light signaling pathway; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: PIF3 (PHYTOCHROME INTERACTING FACTOR 3); DNA binding / protein binding / transcription factor/ transcription regulator (TAIR:AT1G09530.2); Has 970 Blast hits to 970 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 4; Plants - 963; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G02340.1p  transcript_id AT1G02340.1  protein_id AT1G02340.1p  transcript_id AT1G02340.1  
At1g02350	chr1:000469818	0.0	W/469818-469971,470252-470288,470371-470482,470574-470693	AT1G02350.1  CDS  gene_syn T6A9.34  go_process siroheme biosynthetic process|GO:0019354||IEA  go_function molecular_function|GO:0003674||ND  product protoporphyrinogen oxidase-related  note protoporphyrinogen oxidase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: siroheme biosynthetic process; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G02350.1p  transcript_id AT1G02350.1  protein_id AT1G02350.1p  transcript_id AT1G02350.1  
At1g02360	chr1:000472668	0.0	C/472668-473116,472138-472507	AT1G02360.1  CDS  gene_syn T6A9.5, T6A9_5  go_component endomembrane system|GO:0012505||IEA  go_process cell wall macromolecule catabolic process|GO:0016998||IEA  go_function chitinase activity|GO:0004568||IEA  go_function chitinase activity|GO:0004568||ISS  product chitinase, putative  note chitinase, putative; FUNCTIONS IN: chitinase activity; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: stem, leaf whorl, cotyledon, root; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 19 (InterPro:IPR016283), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: chitinase, putative (TAIR:AT4G01700.1); Has 1395 Blast hits to 1389 proteins in 323 species: Archae - 0; Bacteria - 316; Metazoa - 35; Fungi - 2; Plants - 988; Viruses - 2; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT1G02360.1p  transcript_id AT1G02360.1  protein_id AT1G02360.1p  transcript_id AT1G02360.1  
At1g02370	chr1:000474516	0.0	W/474516-474887,475142-476383	AT1G02370.1  CDS  gene_syn T6A9.6, T6A9_6  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G01990.1); Has 3083 Blast hits to 1840 proteins in 75 species: Archae - 0; Bacteria - 2; Metazoa - 43; Fungi - 27; Plants - 2899; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).  protein_id AT1G02370.1p  transcript_id AT1G02370.1  protein_id AT1G02370.1p  transcript_id AT1G02370.1  
At1g02380	chr1:000477814	0.0	W/477814-478443	AT1G02380.1  CDS  gene_syn T6A9.7, T6A9_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01960.1); Has 31 Blast hits to 31 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G02380.1p  transcript_id AT1G02380.1  protein_id AT1G02380.1p  transcript_id AT1G02380.1  
At1g02390	chr1:000480921	0.0	W/480921-481619,482270-483163	AT1G02390.1  CDS  gene_syn ARABIDOPSIS THALIANA GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2, ATGPAT2, GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2, GPAT2, T6A9.8, T6A9_8  gene GPAT2  function Encodes a member of a family of proteins with glycerol-3-phosphate acyltransferase activity.  go_process metabolic process|GO:0008152||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_process metabolic process|GO:0008152||ISS  go_function acyltransferase activity|GO:0008415||ISS  product GPAT2 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2); acyltransferase  note GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2 (GPAT2); FUNCTIONS IN: acyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: GPAT3 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 3); acyltransferase (TAIR:AT4G01950.1); Has 185 Blast hits to 181 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 182; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G02390.1p  transcript_id AT1G02390.1  protein_id AT1G02390.1p  transcript_id AT1G02390.1  
At1g02391	chr1:000483764	0.0	C/483764-483919	AT1G02391.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G02391.1p  transcript_id AT1G02391.1  protein_id AT1G02391.1p  transcript_id AT1G02391.1  
At1g02400	chr1:000486964	0.0	W/486964-487364,488720-489062,489146-489391	AT1G02400.1  CDS  gene_syn ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 4, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, ATGA2OX4, ATGA2OX6, DOWNSTREAM TARGET OF AGL15 1, DTA1, GA2OX6, GIBBERELLIN 2-OXIDASE 6, T6A9.9, T6A9_9  gene GA2OX6  function Encodes a gibberellin 2-oxidase.  go_process response to red or far red light|GO:0009639|17010113|IEP  go_process gibberellin catabolic process|GO:0045487|18805991|IDA  go_function gibberellin 2-beta-dioxygenase activity|GO:0045543|18805991|IDA  product GA2OX6 (GIBBERELLIN 2-OXIDASE 6); gibberellin 2-beta-dioxygenase  note GIBBERELLIN 2-OXIDASE 6 (GA2OX6); FUNCTIONS IN: gibberellin 2-beta-dioxygenase activity; INVOLVED IN: response to red or far red light, gibberellin catabolic process; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: ATGA2OX4 (ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 4); gibberellin 2-beta-dioxygenase (TAIR:AT1G47990.1); Has 5629 Blast hits to 5612 proteins in 663 species: Archae - 0; Bacteria - 697; Metazoa - 72; Fungi - 544; Plants - 2992; Viruses - 0; Other Eukaryotes - 1324 (source: NCBI BLink).  protein_id AT1G02400.1p  transcript_id AT1G02400.1  protein_id AT1G02400.1p  transcript_id AT1G02400.1  
At1g02405	chr1:000490093	0.0	C/490093-490497	AT1G02405.1  CDS  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product proline-rich family protein  note proline-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT1G70990.1); Has 43114 Blast hits to 16780 proteins in 897 species: Archae - 84; Bacteria - 5479; Metazoa - 15161; Fungi - 3897; Plants - 10314; Viruses - 1979; Other Eukaryotes - 6200 (source: NCBI BLink).  protein_id AT1G02405.1p  transcript_id AT1G02405.1  protein_id AT1G02405.1p  transcript_id AT1G02405.1  
At1g02410	chr1:000491300	0.0	W/491300-491379,491488-491803,491907-491959,492086-492158,492248-492352,492443-492523,492607-492762	AT1G02410.1  CDS  gene_syn T6A9.10, T6A9_10  go_function copper ion binding|GO:0005507||IEA  go_process biological_process|GO:0008150||ND  product cytochrome c oxidase assembly protein CtaG / Cox11 family  note cytochrome c oxidase assembly protein CtaG / Cox11 family; FUNCTIONS IN: copper ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase assembly protein CtaG/Cox11 (InterPro:IPR007533); Has 2371 Blast hits to 2371 proteins in 476 species: Archae - 0; Bacteria - 724; Metazoa - 77; Fungi - 85; Plants - 18; Viruses - 0; Other Eukaryotes - 1467 (source: NCBI BLink).  protein_id AT1G02410.1p  transcript_id AT1G02410.1  protein_id AT1G02410.1p  transcript_id AT1G02410.1  
At1g02420	chr1:000493683	0.0	W/493683-495158	AT1G02420.1  CDS  gene_syn T6A9.11, T6A9_11  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G61360.1); Has 14891 Blast hits to 5055 proteins in 157 species: Archae - 4; Bacteria - 12; Metazoa - 333; Fungi - 224; Plants - 13695; Viruses - 0; Other Eukaryotes - 623 (source: NCBI BLink).  protein_id AT1G02420.1p  transcript_id AT1G02420.1  protein_id AT1G02420.1p  transcript_id AT1G02420.1  
At1g02430	chr1:000495912	0.0	C/495912-496062,495757-495833,495563-495682,495350-495489,495175-495259	AT1G02430.1  CDS  gene_syn ADP-ribosylation factor D1B, ATARFD1B, T6A9.12, T6A9_12  gene ATARFD1B  function A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins.  go_component intracellular|GO:0005622||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function GTP binding|GO:0005525|12644670|ISS  product ATARFD1B (ADP-ribosylation factor D1B); GTP binding  note ADP-ribosylation factor D1B (ATARFD1B); FUNCTIONS IN: GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Ras GTPase (InterPro:IPR001806), GTP-binding protein SAR1 (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ATARFD1A (ADP-ribosylation factor D1A); GTP binding (TAIR:AT1G02440.1); Has 6798 Blast hits to 6794 proteins in 312 species: Archae - 4; Bacteria - 5; Metazoa - 3121; Fungi - 943; Plants - 1175; Viruses - 3; Other Eukaryotes - 1547 (source: NCBI BLink).  protein_id AT1G02430.1p  transcript_id AT1G02430.1  protein_id AT1G02430.1p  transcript_id AT1G02430.1  
At1g02440	chr1:000497329	0.0	C/497329-497479,497165-497241,496972-497091,496760-496899,496586-496670	AT1G02440.1  CDS  gene_syn ADP-ribosylation factor D1A, ATARFD1A, T6A9.25  gene ATARFD1A  function A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins.  go_component intracellular|GO:0005622||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function GTP binding|GO:0005525|12644670|ISS  product ATARFD1A (ADP-ribosylation factor D1A); GTP binding  note ADP-ribosylation factor D1A (ATARFD1A); FUNCTIONS IN: GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Ras GTPase (InterPro:IPR001806), GTP-binding protein SAR1 (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ATARFD1B (ADP-ribosylation factor D1B); GTP binding (TAIR:AT1G02430.1); Has 6146 Blast hits to 6143 proteins in 309 species: Archae - 4; Bacteria - 15; Metazoa - 2918; Fungi - 855; Plants - 1046; Viruses - 3; Other Eukaryotes - 1305 (source: NCBI BLink).  protein_id AT1G02440.1p  transcript_id AT1G02440.1  protein_id AT1G02440.1p  transcript_id AT1G02440.1  
At1g02450	chr1:000498052	0.0	C/498052-498480	AT1G02450.1  CDS  gene_syn NIM1-INTERACTING 1, NIMIN-1, NIMIN1, T6A9.23  gene NIMIN1  function NIMIN1 modulates PR gene expression according the following model: NPR1 forms a ternary complex with NIMIN1 and TGA factors upon SAR induction that binds to a positive regulatory cis-element of the PR-1 promoter, termed LS7. This leads to PR-1 gene induction. NIMIN1 decreases transcriptional activation, possibly through its EAR motif, which results in fine-tuning of PR-1 gene expression.  go_component nucleus|GO:0005634|14617066|IDA  go_process regulation of systemic acquired resistance|GO:0010112|15749762|IMP  go_process negative regulation of transcription|GO:0016481|15749762|IMP  go_process defense response to bacterium|GO:0042742|15749762|IMP  go_function protein binding|GO:0005515|15749762|IPI  product NIMIN1 (NIM1-INTERACTING 1); protein binding  note NIM1-INTERACTING 1 (NIMIN1); FUNCTIONS IN: protein binding; INVOLVED IN: regulation of systemic acquired resistance, defense response to bacterium, negative regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 30 Blast hits to 30 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 2; Plants - 14; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G02450.1p  transcript_id AT1G02450.1  protein_id AT1G02450.1p  transcript_id AT1G02450.1  
At1g02460	chr1:000506644	0.0	C/506644-507099,506367-506534,506137-506184,505845-506052,505499-505583,504897-505407	AT1G02460.1  CDS  gene_syn T6A9.22  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: stem, root, seed, stamen; EXPRESSED DURING: 4 anthesis, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT4G01890.1); Has 3418 Blast hits to 3150 proteins in 416 species: Archae - 2; Bacteria - 630; Metazoa - 242; Fungi - 1051; Plants - 1139; Viruses - 100; Other Eukaryotes - 254 (source: NCBI BLink).  protein_id AT1G02460.1p  transcript_id AT1G02460.1  protein_id AT1G02460.1p  transcript_id AT1G02460.1  
At1g02470	chr1:000513332	0.0	C/513332-513573,513147-513246,512525-512620,512378-512430,512214-512262,512074-512121,511916-511990	AT1G02470.1  CDS  gene_syn T6A9.26  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02475.1); Has 276 Blast hits to 276 proteins in 86 species: Archae - 0; Bacteria - 162; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT1G02470.1p  transcript_id AT1G02470.1  protein_id AT1G02470.1p  transcript_id AT1G02470.1  
At1g02470	chr1:000513332	0.0	C/513332-513573,513147-513249,512525-512620,512378-512430,512214-512262,512074-512121,511916-511990	AT1G02470.2  CDS  gene_syn T6A9.26  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02475.1); Has 273 Blast hits to 273 proteins in 85 species: Archae - 0; Bacteria - 160; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT1G02470.2p  transcript_id AT1G02470.2  protein_id AT1G02470.2p  transcript_id AT1G02470.2  
At1g02475	chr1:000515093	0.0	C/515093-515331,514892-514991,514705-514800,514553-514605,514422-514470,514271-514318,514110-514184	AT1G02475.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01883.1); Has 350 Blast hits to 350 proteins in 105 species: Archae - 0; Bacteria - 211; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT1G02475.1p  transcript_id AT1G02475.1  protein_id AT1G02475.1p  transcript_id AT1G02475.1  
At1g02480	chr1:000515494	0.0	W/515494-515566	AT1G02480.1  tRNA  gene_syn 51953.TRNA-PHE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Phe (anticodon: GAA)  transcript_id AT1G02480.1  
At1g02490	chr1:000516618	0.0	W/516618-516734	AT1G02490.1  CDS  gene_syn T14P4.35, T14P4_35  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G02490.1p  transcript_id AT1G02490.1  protein_id AT1G02490.1p  transcript_id AT1G02490.1  
At1g02500	chr1:000519037	0.0	W/519037-520218	AT1G02500.1  CDS  gene_syn MAT1, S-ADENOSYLMETHIONINE SYNTHETASE 1, S-ADENOSYLMETHIONINE SYNTHETASE-1, SAM-1, SAM1  gene SAM1  function encodes a S-adenosylmethionine synthetase. SAM1 is regulated by protein S-nitrosylation. The covalent binding of nitric oxide (NO) to the Cys114 residue inhibits the enzyme activity.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process S-adenosylmethionine biosynthetic process|GO:0006556||ISS  go_process ethylene biosynthetic process|GO:0009693|16311726|TAS  go_process ethylene biosynthetic process|GO:0009693|2535470|TAS  go_function methionine adenosyltransferase activity|GO:0004478|16365035|IDA  go_function methionine adenosyltransferase activity|GO:0004478||ISS  product SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1); methionine adenosyltransferase  note S-ADENOSYLMETHIONINE SYNTHETASE 1 (SAM1); FUNCTIONS IN: methionine adenosyltransferase activity; INVOLVED IN: response to cadmium ion, response to salt stress, ethylene biosynthetic process, S-adenosylmethionine biosynthetic process; LOCATED IN: cell wall, plasma membrane, membrane; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine synthetase (InterPro:IPR002133); BEST Arabidopsis thaliana protein match is: SAM-2 (S-ADENOSYLMETHIONINE SYNTHETASE 2); methionine adenosyltransferase (TAIR:AT4G01850.2); Has 8015 Blast hits to 8014 proteins in 1637 species: Archae - 6; Bacteria - 2990; Metazoa - 309; Fungi - 109; Plants - 502; Viruses - 0; Other Eukaryotes - 4099 (source: NCBI BLink).  protein_id AT1G02500.1p  transcript_id AT1G02500.1  protein_id AT1G02500.1p  transcript_id AT1G02500.1  
At1g02500	chr1:000519037	0.0	W/519037-520218	AT1G02500.2  CDS  gene_syn MAT1, S-ADENOSYLMETHIONINE SYNTHETASE 1, S-ADENOSYLMETHIONINE SYNTHETASE-1, SAM-1, SAM1  gene SAM1  function encodes a S-adenosylmethionine synthetase. SAM1 is regulated by protein S-nitrosylation. The covalent binding of nitric oxide (NO) to the Cys114 residue inhibits the enzyme activity.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process S-adenosylmethionine biosynthetic process|GO:0006556||ISS  go_process ethylene biosynthetic process|GO:0009693|16311726|TAS  go_process ethylene biosynthetic process|GO:0009693|2535470|TAS  go_function methionine adenosyltransferase activity|GO:0004478|16365035|IDA  go_function methionine adenosyltransferase activity|GO:0004478||ISS  product SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1); methionine adenosyltransferase  note S-ADENOSYLMETHIONINE SYNTHETASE 1 (SAM1); FUNCTIONS IN: methionine adenosyltransferase activity; INVOLVED IN: response to cadmium ion, response to salt stress, ethylene biosynthetic process, S-adenosylmethionine biosynthetic process; LOCATED IN: cell wall, plasma membrane, membrane; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine synthetase (InterPro:IPR002133); BEST Arabidopsis thaliana protein match is: SAM-2 (S-ADENOSYLMETHIONINE SYNTHETASE 2); methionine adenosyltransferase (TAIR:AT4G01850.2); Has 8015 Blast hits to 8014 proteins in 1637 species: Archae - 6; Bacteria - 2990; Metazoa - 309; Fungi - 109; Plants - 502; Viruses - 0; Other Eukaryotes - 4099 (source: NCBI BLink).  protein_id AT1G02500.2p  transcript_id AT1G02500.2  protein_id AT1G02500.2p  transcript_id AT1G02500.2  
At1g02510	chr1:000520890	0.0	C/520890-521626,520687-520804	AT1G02510.1  CDS  gene_syn ATKCO4, ATTPK4, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 4, KCO4, T14P4.16, T14P4_16, TPK4  gene TPK4  function Encodes AtTPK4, a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins. AtTPK4 is targeted to the plasma membrane. In contrast other members of the AtTPK proteins are located in tonoplast. AtTPK4 forms a voltage-independent K+ channel that is blocked by extracellular calcium ions. May form homomeric ion channels in vivo.  go_component membrane|GO:0016020||IEA  go_process potassium ion transport|GO:0006813||IEA  go_function outward rectifier potassium channel activity|GO:0015271||ISS  product TPK4; outward rectifier potassium channel  note TPK4; FUNCTIONS IN: outward rectifier potassium channel activity; INVOLVED IN: potassium ion transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Potassium channel, two pore-domain (InterPro:IPR003280), Ion transport 2 (InterPro:IPR013099); BEST Arabidopsis thaliana protein match is: KCO5 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 5); outward rectifier potassium channel (TAIR:AT4G01840.1); Has 3679 Blast hits to 3531 proteins in 680 species: Archae - 100; Bacteria - 1139; Metazoa - 1357; Fungi - 117; Plants - 118; Viruses - 19; Other Eukaryotes - 829 (source: NCBI BLink).  protein_id AT1G02510.1p  transcript_id AT1G02510.1  protein_id AT1G02510.1p  transcript_id AT1G02510.1  
At1g02520	chr1:000524134	0.0	W/524134-524436,524521-524575,524662-524837,524917-525138,525224-525462,525546-527202,527311-527577,527658-527921,528010-528309,528392-528745	AT1G02520.1  CDS  gene_syn P-GLYCOPROTEIN 11, PGP11, T14P4.15, T14P4_15  gene PGP11  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process transport|GO:0006810||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product PGP11 (P-GLYCOPROTEIN 11); ATPase, coupled to transmembrane movement of substances  note P-GLYCOPROTEIN 11 (PGP11); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: plasma membrane; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PGP12 (P-GLYCOPROTEIN 12); ATPase, coupled to transmembrane movement of substances (TAIR:AT1G02530.1); Has 498537 Blast hits to 232899 proteins in 2673 species: Archae - 8833; Bacteria - 334202; Metazoa - 15781; Fungi - 8550; Plants - 4753; Viruses - 34; Other Eukaryotes - 126384 (source: NCBI BLink).  protein_id AT1G02520.1p  transcript_id AT1G02520.1  protein_id AT1G02520.1p  transcript_id AT1G02520.1  
At1g02530	chr1:000529836	0.0	W/529836-530099,530182-530236,530403-530578,530681-530902,530980-531218,531325-533005,533079-533345,533453-533716,533808-534107,534189-534542	AT1G02530.1  CDS  gene_syn P-GLYCOPROTEIN 12, PGP12, T14P4.14, T14P4_14  gene PGP12  go_component integral to membrane|GO:0016021||IEA  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product PGP12 (P-GLYCOPROTEIN 12); ATPase, coupled to transmembrane movement of substances  note P-GLYCOPROTEIN 12 (PGP12); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: response to cyclopentenone; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PGP11 (P-GLYCOPROTEIN 11); ATPase, coupled to transmembrane movement of substances (TAIR:AT1G02520.1); Has 498500 Blast hits to 233438 proteins in 2643 species: Archae - 8817; Bacteria - 333877; Metazoa - 16004; Fungi - 8522; Plants - 4762; Viruses - 34; Other Eukaryotes - 126484 (source: NCBI BLink).  protein_id AT1G02530.1p  transcript_id AT1G02530.1  protein_id AT1G02530.1p  transcript_id AT1G02530.1  
At1g02540	chr1:000534827	0.0	C/534827-535699	AT1G02540.1  CDS  gene_syn T14P4.13, T14P4_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 3646 Blast hits to 2149 proteins in 221 species: Archae - 14; Bacteria - 166; Metazoa - 1219; Fungi - 244; Plants - 71; Viruses - 209; Other Eukaryotes - 1723 (source: NCBI BLink).  protein_id AT1G02540.1p  transcript_id AT1G02540.1  protein_id AT1G02540.1p  transcript_id AT1G02540.1  
At1g02550	chr1:000536483	0.0	W/536483-537211	AT1G02550.1  CDS  gene_syn T14P4.25, T14P4_25  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT2G47340.1); Has 106 Blast hits to 101 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 106; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G02550.1p  transcript_id AT1G02550.1  protein_id AT1G02550.1p  transcript_id AT1G02550.1  
At1g02560	chr1:000538000	0.0	W/538000-538130,538209-538328,538419-538533,538627-538719,538808-538853,538936-539008,539255-539289,539391-539479,539611-539805	AT1G02560.1  CDS  gene_syn CLP PROTEASE 1 PROTEOLYTIC SUBUNIT, CLPP5, NCLPP1, NCLPP5, NUCLEAR CLPP 5, NUCLEAR ENCODED CLP PROTEASE 5, NUCLEAR-ENCODED CLPP 1, T14P4.12, T14P4_12  gene CLPP5  function One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastid stroma|GO:0009532|14593120|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_component chloroplast thylakoid|GO:0009534|11278690|IDA  go_component chloroplast stroma|GO:0009570|11278690|IDA  go_component chloroplastic endopeptidase Clp complex|GO:0009840|11278690|IDA  go_process peptidyl-cysteine S-nitrosylation|GO:0018119|18297659|IDA  product CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5); serine-type endopeptidase  note NUCLEAR ENCODED CLP PROTEASE 5 (CLPP5); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: peptidyl-cysteine S-nitrosylation; LOCATED IN: in 7 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLPP3; serine-type endopeptidase (TAIR:AT1G66670.1); Has 9098 Blast hits to 9096 proteins in 1699 species: Archae - 2; Bacteria - 4626; Metazoa - 115; Fungi - 50; Plants - 688; Viruses - 75; Other Eukaryotes - 3542 (source: NCBI BLink).  protein_id AT1G02560.1p  transcript_id AT1G02560.1  protein_id AT1G02560.1p  transcript_id AT1G02560.1  
At1g02570	chr1:000541380	0.0	W/541380-541792,541856-542093,543339-543983	AT1G02570.1  CDS  gene_syn T14P4.23, T14P4_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, sperm cell, leaf whorl, root, carpel; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G47360.1); Has 10 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G02570.1p  transcript_id AT1G02570.1  protein_id AT1G02570.1p  transcript_id AT1G02570.1  
At1g02580	chr1:000544796	0.0	W/544796-544804,544973-545062,545632-545963,546062-546235,546313-546400,546512-546637,546727-546774,546871-546939,547024-547172,547248-547374,547463-547671,547748-547879,547970-548051,548134-548181,548311-548439,548525-548602,548815-548994	AT1G02580.1  CDS  gene_syn EMB173, EMBRYO DEFECTIVE 173, FERTILIZATION INDEPENDENT SEED 1, FIS1, MEA, MEDEA, SDG5, SET DOMAIN-CONTAINING PROTEIN 5, T14P4.11, T14P4_11  gene MEA  function Encodes a putative transcription factor MEDEA (MEA) that negatively regulates seed development in the absence of fertilization. Mutations in this locus result in embryo lethality. MEA is a Polycomb group gene that is imprinted in the endosperm. The maternal allele is expressed and the paternal allele is silent. MEA is controlled by DEMETER (DME), a DNA glycosylase required to activate MEA expression, and METHYLTRANSFERASE I (MET1), which maintains CG methylation at the MEA locus. MEA is involved in the negative regulation of its own imprinted gene expression; the effect is not only allele-specific but also dynamically regulated during seed development. In the ovule, the MEA transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilization  go_component nucleus|GO:0005634|10962025|IDA  go_process response to absence of light|GO:0009646|12376626|IEP  go_process endosperm development|GO:0009960||NAS  go_process negative regulation of transcription|GO:0016481|16651654|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function sequence-specific DNA binding|GO:0043565|16651654|IDA  product MEA (MEDEA); sequence-specific DNA binding / transcription factor  note MEDEA (MEA); FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding; INVOLVED IN: negative regulation of transcription, response to absence of light, endosperm development; LOCATED IN: nucleus; EXPRESSED IN: ovule, female gametophyte; EXPRESSED DURING: megagametophyte developmental stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), SET (InterPro:IPR001214), SANT, eukarya (InterPro:IPR017884); BEST Arabidopsis thaliana protein match is: SWN (SWINGER); transcription factor (TAIR:AT4G02020.1); Has 3734 Blast hits to 3651 proteins in 341 species: Archae - 0; Bacteria - 294; Metazoa - 1636; Fungi - 324; Plants - 562; Viruses - 0; Other Eukaryotes - 918 (source: NCBI BLink).  protein_id AT1G02580.1p  transcript_id AT1G02580.1  protein_id AT1G02580.1p  transcript_id AT1G02580.1  
At1g02600	chr1:000552640	0.0	W/552640-552711	AT1G02600.1  tRNA  gene_syn 51953.TRNA-HIS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-His (anticodon: GTG)  transcript_id AT1G02600.1  
At1g02590	chr1:000552687	0.0	C/552687-552761,552456-552506,552275-552373,552138-552182	AT1G02590.1  CDS  gene_syn T14P4.22, T14P4_22  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function aldehyde oxidase activity|GO:0004031||ISS  product aldehyde oxidase, putative  note aldehyde oxidase, putative; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, aldehyde oxidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding (InterPro:IPR008274); BEST Arabidopsis thaliana protein match is: AAO4 (ARABIDOPSIS ALDEHYDE OXIDASE 4); aldehyde oxidase/ aryl-aldehyde oxidase (TAIR:AT1G04580.1); Has 1500 Blast hits to 1498 proteins in 348 species: Archae - 0; Bacteria - 421; Metazoa - 494; Fungi - 54; Plants - 97; Viruses - 0; Other Eukaryotes - 434 (source: NCBI BLink).  protein_id AT1G02590.1p  transcript_id AT1G02590.1  protein_id AT1G02590.1p  transcript_id AT1G02590.1  
At1g02610	chr1:000555726	0.0	C/555726-555854,555572-555643,553600-553677,553395-553475,553181-553261	AT1G02610.1  CDS  gene_syn T14P4.10, T14P4_10  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: PIT1 (pitchoun 1); protein binding / zinc ion binding (TAIR:AT4G02075.1); Has 1164 Blast hits to 1147 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 636; Fungi - 68; Plants - 329; Viruses - 16; Other Eukaryotes - 115 (source: NCBI BLink).  protein_id AT1G02610.1p  transcript_id AT1G02610.1  protein_id AT1G02610.1p  transcript_id AT1G02610.1  
At1g02620	chr1:000557092	0.0	W/557092-557108,557317-557668	AT1G02620.1  CDS  gene_syn T14P4.21, T14P4_21  go_component intracellular|GO:0005622||IEA  go_component endomembrane system|GO:0012505||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function GTP binding|GO:0005525||IEA  product GTP-binding protein (SAR1A)  note GTP-binding protein (SAR1A); FUNCTIONS IN: GTP binding; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, intracellular; CONTAINS InterPro DOMAIN/s: GTP-binding protein SAR1 (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ATSAR2 (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2); GTP binding (TAIR:AT4G02080.1); Has 3545 Blast hits to 3545 proteins in 252 species: Archae - 0; Bacteria - 0; Metazoa - 1848; Fungi - 503; Plants - 612; Viruses - 0; Other Eukaryotes - 582 (source: NCBI BLink).  protein_id AT1G02620.1p  transcript_id AT1G02620.1  protein_id AT1G02620.1p  transcript_id AT1G02620.1  
At1g02630	chr1:000561902	0.0	C/561902-562382,561007-561695	AT1G02630.1  CDS  gene_syn T14P4.9, T14P4_9  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function nucleoside transmembrane transporter activity|GO:0005337||ISS  product equilibrative nucleoside transporter, putative (ENT8)  note equilibrative nucleoside transporter, putative (ENT8); FUNCTIONS IN: nucleoside transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Delayed-early response protein/equilibrative nucleoside transporter (InterPro:IPR002259); BEST Arabidopsis thaliana protein match is: ENT1,AT (EQUILIBRATIVE NUCLEOTIDE TRANSPORTER 1); nucleoside transmembrane transporter/ nucleoside transmembrane transporter, against a concentration gradient (TAIR:AT1G70330.1); Has 882 Blast hits to 771 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 483; Fungi - 75; Plants - 90; Viruses - 3; Other Eukaryotes - 231 (source: NCBI BLink).  protein_id AT1G02630.1p  transcript_id AT1G02630.1  protein_id AT1G02630.1p  transcript_id AT1G02630.1  
At1g02630	chr1:000561902	0.0	C/561902-562382,561453-561695,561007-561320	AT1G02630.2  CDS  gene_syn T14P4.9, T14P4_9  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function nucleoside transmembrane transporter activity|GO:0005337||ISS  product equilibrative nucleoside transporter, putative (ENT8)  note equilibrative nucleoside transporter, putative (ENT8); FUNCTIONS IN: nucleoside transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Delayed-early response protein/equilibrative nucleoside transporter (InterPro:IPR002259); BEST Arabidopsis thaliana protein match is: ENT1,AT (EQUILIBRATIVE NUCLEOTIDE TRANSPORTER 1); nucleoside transmembrane transporter/ nucleoside transmembrane transporter, against a concentration gradient (TAIR:AT1G70330.1); Has 997 Blast hits to 684 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 670; Fungi - 64; Plants - 126; Viruses - 3; Other Eukaryotes - 134 (source: NCBI BLink).  protein_id AT1G02630.2p  transcript_id AT1G02630.2  protein_id AT1G02630.2p  transcript_id AT1G02630.2  
At1g02640	chr1:000564293	0.0	W/564293-564697,565433-565711,565784-565953,566043-566140,566226-567580	AT1G02640.1  CDS  gene_syn ATBXL2, BETA-XYLOSIDASE 2, BXL2, T14P4.8, T14P4_8  gene BXL2  function encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BXL2 (BETA-XYLOSIDASE 2); hydrolase, hydrolyzing O-glycosyl compounds  note BETA-XYLOSIDASE 2 (BXL2); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: BXL1 (BETA-XYLOSIDASE 1); hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT5G49360.1); Has 5305 Blast hits to 4699 proteins in 682 species: Archae - 16; Bacteria - 2573; Metazoa - 10; Fungi - 930; Plants - 294; Viruses - 0; Other Eukaryotes - 1482 (source: NCBI BLink).  protein_id AT1G02640.1p  transcript_id AT1G02640.1  protein_id AT1G02640.1p  transcript_id AT1G02640.1  
At1g02650	chr1:000568704	0.0	W/568704-568739,568832-569223,569305-570418	AT1G02650.1  CDS  gene_syn T14P4.7, T14P4_7  go_function binding|GO:0005488||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding, binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT4G02100.1); Has 132 Blast hits to 130 proteins in 34 species: Archae - 0; Bacteria - 2; Metazoa - 39; Fungi - 10; Plants - 74; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G02650.1p  transcript_id AT1G02650.1  protein_id AT1G02650.1p  transcript_id AT1G02650.1  
At1g02660	chr1:000574120	0.0	C/574120-574746,573489-573953,573338-573397,572836-573252,572187-572759	AT1G02660.1  CDS  gene_syn T14P4.6, T14P4_6  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_component cellular_component|GO:0005575||ND  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product lipase class 3 family protein  note lipase class 3 family protein; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: lipase class 3 family protein (TAIR:AT3G62590.1); Has 601 Blast hits to 595 proteins in 116 species: Archae - 0; Bacteria - 17; Metazoa - 188; Fungi - 136; Plants - 92; Viruses - 14; Other Eukaryotes - 154 (source: NCBI BLink).  protein_id AT1G02660.1p  transcript_id AT1G02660.1  protein_id AT1G02660.1p  transcript_id AT1G02660.1  
At1g02670	chr1:000576046	0.0	W/576046-576145,576548-576613,576850-576912,576994-577592,577784-577941,577979-578079,578181-578244,578546-578620,578722-578791,578895-579017,579196-579312,579421-579525,579647-579799,579879-579967,580050-580130,580227-580299	AT1G02670.1  CDS  gene_syn T14P4.5, T14P4_5  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process DNA repair|GO:0006281||ISS  go_function DNA binding|GO:0003677||ISS  go_function helicase activity|GO:0004386||ISS  go_function ATP binding|GO:0005524||ISS  product DNA repair protein, putative  note DNA repair protein, putative; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein (TAIR:AT1G05120.1); Has 13806 Blast hits to 10105 proteins in 994 species: Archae - 90; Bacteria - 3389; Metazoa - 3316; Fungi - 3044; Plants - 952; Viruses - 105; Other Eukaryotes - 2910 (source: NCBI BLink).  protein_id AT1G02670.1p  transcript_id AT1G02670.1  protein_id AT1G02670.1p  transcript_id AT1G02670.1  
At1g02680	chr1:000581084	0.0	W/581084-581186,581278-581315,581497-581556,581644-581718,581815-581919	AT1G02680.1  CDS  gene_syn T14P4.32, T14P4_32, TAF13, TBP-ASSOCIATED FACTOR 13  gene TAF13  go_component transcription factor complex|GO:0005667||IEA  go_process transcription from RNA polymerase II promoter|GO:0006366||IEA  go_function DNA binding|GO:0003677||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  go_component transcription factor complex|GO:0005667||ISS  go_process transcription initiation|GO:0006352||ISS  go_function RNA polymerase II transcription factor activity|GO:0003702||ISS  product TAF13 (TBP-ASSOCIATED FACTOR 13); DNA binding / RNA polymerase II transcription factor  note TBP-ASSOCIATED FACTOR 13 (TAF13); FUNCTIONS IN: RNA polymerase II transcription factor activity, DNA binding; INVOLVED IN: transcription initiation, transcription from RNA polymerase II promoter; LOCATED IN: transcription factor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor IID, 18 kDa subunit (InterPro:IPR003195), Histone-fold (InterPro:IPR009072); Has 401 Blast hits to 401 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 182; Fungi - 191; Plants - 19; Viruses - 2; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G02680.1p  transcript_id AT1G02680.1  protein_id AT1G02680.1p  transcript_id AT1G02680.1  
At1g02681	chr1:000582413	0.0	W/582413-582922	AT1G02681.1  pseudogenic_transcript  pseudo  function Pseudogene of AT4G02160  
At1g02690	chr1:000584397	0.0	W/584397-584618,584860-584956,585053-585144,585237-585368,585500-585685,585776-585942,586023-586101,586192-586320,586439-586566,586649-587036	AT1G02690.2  CDS  gene_syn IMPA-6, IMPORTIN ALPHA ISOFORM 6, T14P4.3, T14P4_3  gene IMPA-6  function Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.  go_component nucleus|GO:0005634||IEA  go_component nuclear pore|GO:0005643||IEA  go_component cytoplasm|GO:0005737||IEA  go_process protein import into nucleus|GO:0006606||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function binding|GO:0005488||IEA  go_function protein transporter activity|GO:0008565||IEA  go_process intracellular protein transport|GO:0006886||ISS  go_function protein transporter activity|GO:0008565||ISS  product IMPA-6 (IMPORTIN ALPHA ISOFORM 6); binding / protein transporter  note IMPORTIN ALPHA ISOFORM 6 (IMPA-6); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Importin-alpha-like, importin-beta-binding region (InterPro:IPR002652), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: MOS6 (MODIFIER OF SNC1, 6); binding / protein transporter (TAIR:AT4G02150.1); Has 3205 Blast hits to 2358 proteins in 229 species: Archae - 4; Bacteria - 31; Metazoa - 1609; Fungi - 356; Plants - 669; Viruses - 0; Other Eukaryotes - 536 (source: NCBI BLink).  protein_id AT1G02690.2p  transcript_id AT1G02690.2  protein_id AT1G02690.2p  transcript_id AT1G02690.2  
At1g02690	chr1:000584397	0.0	W/584397-584618,584860-584956,585053-585144,585237-585368,585500-585685,585779-585942,586023-586101,586192-586320,586439-586566,586649-587036	AT1G02690.1  CDS  gene_syn IMPA-6, IMPORTIN ALPHA ISOFORM 6, T14P4.3, T14P4_3  gene IMPA-6  function Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.  go_component nucleus|GO:0005634||IEA  go_component nuclear pore|GO:0005643||IEA  go_component cytoplasm|GO:0005737||IEA  go_process protein import into nucleus|GO:0006606||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function binding|GO:0005488||IEA  go_function protein transporter activity|GO:0008565||IEA  go_process intracellular protein transport|GO:0006886||ISS  go_function protein transporter activity|GO:0008565||ISS  product IMPA-6 (IMPORTIN ALPHA ISOFORM 6); binding / protein transporter  note IMPORTIN ALPHA ISOFORM 6 (IMPA-6); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Importin-alpha-like, importin-beta-binding region (InterPro:IPR002652), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: MOS6 (MODIFIER OF SNC1, 6); binding / protein transporter (TAIR:AT4G02150.1); Has 3205 Blast hits to 2408 proteins in 229 species: Archae - 4; Bacteria - 32; Metazoa - 1557; Fungi - 400; Plants - 681; Viruses - 0; Other Eukaryotes - 531 (source: NCBI BLink).  protein_id AT1G02690.1p  transcript_id AT1G02690.1  protein_id AT1G02690.1p  transcript_id AT1G02690.1  
At1g02700	chr1:000588367	0.0	W/588367-588540,588663-589232	AT1G02700.1  CDS  gene_syn T14P4.2, T14P4_2  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02140.1); Has 34 Blast hits to 34 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 4; Plants - 16; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G02700.1p  transcript_id AT1G02700.1  protein_id AT1G02700.1p  transcript_id AT1G02700.1  
At1g02710	chr1:000589706	0.0	C/589706-589996	AT1G02710.1  CDS  gene_syn T14P4.26, T14P4_26  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 87773 Blast hits to 21059 proteins in 1292 species: Archae - 104; Bacteria - 30039; Metazoa - 26626; Fungi - 5362; Plants - 9346; Viruses - 1261; Other Eukaryotes - 15035 (source: NCBI BLink).  protein_id AT1G02710.1p  transcript_id AT1G02710.1  protein_id AT1G02710.1p  transcript_id AT1G02710.1  
At1g02720	chr1:000592115	0.0	W/592115-593200	AT1G02720.1  CDS  gene_syn GALACTURONOSYLTRANSFERASE 5, GATL5, T14P4.1, T14P4_1  gene GATL5  function Encodes a protein with putative galacturonosyltransferase activity.  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS  product GATL5 (GALACTURONOSYLTRANSFERASE 5); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note GALACTURONOSYLTRANSFERASE 5 (GATL5); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: GATL6; polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT4G02130.3); Has 1149 Blast hits to 1139 proteins in 234 species: Archae - 0; Bacteria - 432; Metazoa - 230; Fungi - 0; Plants - 420; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT1G02720.1p  transcript_id AT1G02720.1  protein_id AT1G02720.1p  transcript_id AT1G02720.1  
At1g02720	chr1:000592115	0.0	W/592115-593200	AT1G02720.2  CDS  gene_syn GALACTURONOSYLTRANSFERASE 5, GATL5, T14P4.1, T14P4_1  gene GATL5  function Encodes a protein with putative galacturonosyltransferase activity.  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS  product GATL5 (GALACTURONOSYLTRANSFERASE 5); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note GALACTURONOSYLTRANSFERASE 5 (GATL5); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: GATL6; polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT4G02130.3); Has 1149 Blast hits to 1139 proteins in 234 species: Archae - 0; Bacteria - 432; Metazoa - 230; Fungi - 0; Plants - 420; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT1G02720.2p  transcript_id AT1G02720.2  protein_id AT1G02720.2p  transcript_id AT1G02720.2  
At1g02730	chr1:000597521	0.0	C/597521-598473,596572-597382,594697-596478	AT1G02730.1  CDS  gene_syn ATCSLD5, CELLULOSE SYNTHASE LIKE D5, CELLULOSE SYNTHASE-LIKE D5, CSLD5, T14P4.29  gene ATCSLD5  function Encodes a gene similar to cellulose synthase. Knock-out mutant has reduced growth, reduced xylan level and reduced xylan synthase activity in stems.  go_component Golgi apparatus|GO:0005794|17892446|IDA  go_process polysaccharide biosynthetic process|GO:0000271||ISS  go_process plant-type cell wall biogenesis|GO:0009832||ISS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_process cell wall biogenesis|GO:0042546|17892446|NAS  go_process shoot development|GO:0048367|17892446|IMP  go_function cellulose synthase activity|GO:0016759||ISS  go_function 1,4-beta-D-xylan synthase activity|GO:0047517|17892446|IMP  product ATCSLD5; 1,4-beta-D-xylan synthase/ cellulose synthase  note ATCSLD5; FUNCTIONS IN: 1,4-beta-D-xylan synthase activity, cellulose synthase activity; INVOLVED IN: response to cyclopentenone, shoot development, cell wall biogenesis, plant-type cell wall biogenesis, polysaccharide biosynthetic process; LOCATED IN: Golgi apparatus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: CSLD3 (CELLULOSE SYNTHASE-LIKE D3); cellulose synthase/ transferase, transferring glycosyl groups (TAIR:AT3G03050.1); Has 2218 Blast hits to 2004 proteins in 454 species: Archae - 2; Bacteria - 733; Metazoa - 91; Fungi - 12; Plants - 1317; Viruses - 2; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT1G02730.1p  transcript_id AT1G02730.1  protein_id AT1G02730.1p  transcript_id AT1G02730.1  
At1g02740	chr1:000601812	0.0	C/601812-602021,601653-601706,601547-601560,601227-601372,600936-600976,600721-600825,600434-600513,600065-600234,599892-599976,599734-599812	AT1G02740.1  CDS  gene_syn T14P4.28  go_component chromatin|GO:0000785||IEA  go_component nucleus|GO:0005634||IEA  go_process chromatin assembly or disassembly|GO:0006333||IEA  go_function chromatin binding|GO:0003682||IEA  product chromatin binding  note chromatin binding; FUNCTIONS IN: chromatin binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Histone H4 acetyltransferase, NuA4 complex, Eaf3/MRG15 subunit (InterPro:IPR017398), Tudor-like, plant (InterPro:IPR014002), MRG (InterPro:IPR008676), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: MRG family protein (TAIR:AT4G37280.1); Has 870 Blast hits to 753 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 682; Fungi - 111; Plants - 39; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT1G02740.1p  transcript_id AT1G02740.1  protein_id AT1G02740.1p  transcript_id AT1G02740.1  
At1g02750	chr1:000602673	0.0	W/602673-602754,602980-603125,603601-603678,603775-604134	AT1G02750.1  CDS  gene_syn T14P4.27  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process response to water deprivation|GO:0009414||ISS  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to water deprivation; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Drought induced 19 (InterPro:IPR008598); BEST Arabidopsis thaliana protein match is: drought-responsive family protein (TAIR:AT4G02200.1); Has 126 Blast hits to 126 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G02750.1p  transcript_id AT1G02750.1  protein_id AT1G02750.1p  transcript_id AT1G02750.1  
At1g02760	chr1:000604402	0.0	W/604402-604474	AT1G02760.1  tRNA  gene_syn 51600.TRNA-LYS-1, 51953.TRNA-LYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Lys (anticodon: CTT)  transcript_id AT1G02760.1  
At1g02770	chr1:000606529	0.0	C/606529-606624,606176-606322,605919-606102,605705-605805,605515-605604,605071-605403	AT1G02770.1  CDS  gene_syn T14P4.24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19060.1); Has 77 Blast hits to 76 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G02770.1p  transcript_id AT1G02770.1  protein_id AT1G02770.1p  transcript_id AT1G02770.1  
At1g02780	chr1:000609280	0.0	C/609280-609391,608816-608938,608398-608711,608242-608309,608120-608147	AT1G02780.1  CDS  gene_syn T14P4.34, emb2386, embryo defective 2386  gene emb2386  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product emb2386 (embryo defective 2386); structural constituent of ribosome  note embryo defective 2386 (emb2386); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: embryonic development ending in seed dormancy, translation, ribosome biogenesis; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L19/L19e (InterPro:IPR000196), Ribosomal protein L19/L19e, domain 3 (InterPro:IPR015974), Ribosomal protein L19/L19e, domain 1 (InterPro:IPR015972); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L19 (RPL19C) (TAIR:AT4G02230.1); Has 865 Blast hits to 865 proteins in 295 species: Archae - 206; Bacteria - 0; Metazoa - 278; Fungi - 107; Plants - 94; Viruses - 0; Other Eukaryotes - 180 (source: NCBI BLink).  protein_id AT1G02780.1p  transcript_id AT1G02780.1  protein_id AT1G02780.1p  transcript_id AT1G02780.1  
At1g02790	chr1:000612019	0.0	C/612019-612225,611618-611920,611026-611529,610681-610935	AT1G02790.1  CDS  gene_syn PGA4, POLYGALACTURONASE, POLYGALACTURONASE 4, T14P4.31  gene PGA4  function encodes a exopolygalacturonase.  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650|10485285|ISS  go_function polygalacturonase activity|GO:0004650||ISS  product PGA4 (POLYGALACTURONASE 4); polygalacturonase  note POLYGALACTURONASE 4 (PGA4); FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: polygalacturonase, putative / pectinase, putative (TAIR:AT3G07830.1); Has 2429 Blast hits to 2424 proteins in 312 species: Archae - 2; Bacteria - 478; Metazoa - 8; Fungi - 988; Plants - 879; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT1G02790.1p  transcript_id AT1G02790.1  protein_id AT1G02790.1p  transcript_id AT1G02790.1  
At1g02800	chr1:000615852	0.0	C/615852-616103,615277-615483,614989-615189,614722-614814,614449-614610,614240-614345,613994-614157,613386-613706	AT1G02800.1  CDS  gene_syn ARABIDOPSIS THALIANA CELLULASE 2, ATCEL2, CEL2, ENDO-1,4-BETA GLUCANASE, F22D16.21, F22D16_21  gene ATCEL2  function Encodes a protein with similarity to endo-1,4-b-glucanases and is a member of Glycoside Hydrolase Family 9. CEL2 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia.  go_component endomembrane system|GO:0012505||IEA  go_process pattern specification process|GO:0007389|10074717|TAS  go_process response to nematode|GO:0009624|18069944|IEP  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function cellulase activity|GO:0008810|10074717|TAS  product ATCEL2; cellulase/ hydrolase, hydrolyzing O-glycosyl compounds  note ATCEL2; FUNCTIONS IN: cellulase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to nematode, pattern specification process; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: AtGH9B13 (Arabidopsis thaliana glycosyl hydrolase 9B13); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT4G02290.1); Has 1137 Blast hits to 1132 proteins in 194 species: Archae - 0; Bacteria - 340; Metazoa - 132; Fungi - 14; Plants - 623; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT1G02800.1p  transcript_id AT1G02800.1  protein_id AT1G02800.1p  transcript_id AT1G02800.1  
At1g02810	chr1:000618284	0.0	W/618284-619328,619639-620333	AT1G02810.1  CDS  gene_syn F22D16.20, F22D16_20  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase inhibitor (InterPro:IPR006501), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: ATPMEPCRB; pectinesterase (TAIR:AT4G02330.1); Has 1267 Blast hits to 1233 proteins in 181 species: Archae - 0; Bacteria - 238; Metazoa - 5; Fungi - 135; Plants - 888; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G02810.1p  transcript_id AT1G02810.1  protein_id AT1G02810.1p  transcript_id AT1G02810.1  
At1g02813	chr1:000620773	0.0	W/620773-621222	AT1G02813.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, cauline leaf, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02360.1); Has 289 Blast hits to 288 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 288; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G02813.1p  transcript_id AT1G02813.1  protein_id AT1G02813.1p  transcript_id AT1G02813.1  
At1g02816	chr1:000621637	0.0	W/621637-622137	AT1G02816.1  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02370.1); Has 327 Blast hits to 326 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 326; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G02816.1p  transcript_id AT1G02816.1  protein_id AT1G02816.1p  transcript_id AT1G02816.1  
At1g02820	chr1:000624231	0.0	C/624231-624304,623933-624134	AT1G02820.1  CDS  gene_syn F22D16.18, F22D16_18  go_process response to stress|GO:0006950||IEA  go_process embryonic development|GO:0009790||ISS  go_function molecular_function|GO:0003674||ND  product late embryogenesis abundant 3 family protein / LEA3 family protein  note late embryogenesis abundant 3 family protein / LEA3 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development, response to stress; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein 3 (InterPro:IPR004926); BEST Arabidopsis thaliana protein match is: SAG21 (SENESCENCE-ASSOCIATED GENE 21) (TAIR:AT4G02380.1); Has 95 Blast hits to 92 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G02820.1p  transcript_id AT1G02820.1  protein_id AT1G02820.1p  transcript_id AT1G02820.1  
At1g02830	chr1:000625373	0.0	C/625373-625608,625145-625292	AT1G02830.1  CDS  gene_syn F22D16.17, F22D16_17  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  product 60S ribosomal protein L22 (RPL22A)  note 60S ribosomal protein L22 (RPL22A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, ribosome; EXPRESSED IN: shoot apex, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein L22e (InterPro:IPR002671); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L22 (RPL22C) (TAIR:AT5G27770.1); Has 490 Blast hits to 490 proteins in 172 species: Archae - 0; Bacteria - 0; Metazoa - 251; Fungi - 89; Plants - 73; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT1G02830.1p  transcript_id AT1G02830.1  protein_id AT1G02830.1p  transcript_id AT1G02830.1  
At1g02840	chr1:000626918	0.0	W/626918-627004,627100-627165,627308-627382,627482-627614,627701-627747,627835-627892,627970-628019,628112-628168,628246-628469,628935-628995	AT1G02840.2  CDS  gene_syn ATSRP34, F22D16.16, F22D16_16, SR1, SRP34  gene SR1  function SR1 is a plant homologue of the human general/alternative splicing factor SF2/ASF.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component nucleus|GO:0005634|10215626|ISS  go_component nuclear speck|GO:0016607|15133128|IDA  go_component nuclear speck|GO:0016607|15686520|IDA  go_component interchromatin granule|GO:0035061|15034145|IDA  go_function RNA binding|GO:0003723||ISS  product SR1; RNA binding / nucleic acid binding / nucleotide binding  note SR1; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: interchromatin granule, nuclear speck, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: pre-mRNA splicing factor, putative / SR1 protein, putative (TAIR:AT4G02430.2); Has 20493 Blast hits to 14354 proteins in 599 species: Archae - 10; Bacteria - 760; Metazoa - 13252; Fungi - 2190; Plants - 1990; Viruses - 286; Other Eukaryotes - 2005 (source: NCBI BLink).  protein_id AT1G02840.2p  transcript_id AT1G02840.2  protein_id AT1G02840.2p  transcript_id AT1G02840.2  
At1g02840	chr1:000626918	0.0	W/626918-627004,627100-627165,627308-627382,627482-627614,627701-627747,627835-627892,627970-628019,628112-628168,628246-628469,629288-629321,629418-629494,629580-629583	AT1G02840.1  CDS  gene_syn ATSRP34, F22D16.16, F22D16_16, SR1, SRP34  gene SR1  function SR1 is a plant homologue of the human general/alternative splicing factor SF2/ASF.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component nucleus|GO:0005634|10215626|ISS  go_component nuclear speck|GO:0016607|15133128|IDA  go_component nuclear speck|GO:0016607|15686520|IDA  go_component interchromatin granule|GO:0035061|15034145|IDA  go_function RNA binding|GO:0003723||ISS  product SR1; RNA binding / nucleic acid binding / nucleotide binding  note SR1; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: interchromatin granule, nuclear speck, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: pre-mRNA splicing factor, putative / SR1 protein, putative (TAIR:AT4G02430.2); Has 30426 Blast hits to 17112 proteins in 741 species: Archae - 12; Bacteria - 974; Metazoa - 19200; Fungi - 2749; Plants - 2550; Viruses - 546; Other Eukaryotes - 4395 (source: NCBI BLink).  protein_id AT1G02840.1p  transcript_id AT1G02840.1  protein_id AT1G02840.1p  transcript_id AT1G02840.1  
At1g02840	chr1:000626918	0.0	W/626918-627004,627100-627165,627308-627382,627482-627614,627701-627747,627835-627892,627970-628019,628112-628168,628246-628469,629288-629321,629418-629494,629580-629583	AT1G02840.3  CDS  gene_syn ATSRP34, F22D16.16, F22D16_16, SR1, SRP34  gene SR1  function SR1 is a plant homologue of the human general/alternative splicing factor SF2/ASF.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component nucleus|GO:0005634|10215626|ISS  go_component nuclear speck|GO:0016607|15133128|IDA  go_component nuclear speck|GO:0016607|15686520|IDA  go_component interchromatin granule|GO:0035061|15034145|IDA  go_function RNA binding|GO:0003723||ISS  product SR1; RNA binding / nucleic acid binding / nucleotide binding  note SR1; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: interchromatin granule, nuclear speck, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: pre-mRNA splicing factor, putative / SR1 protein, putative (TAIR:AT4G02430.2); Has 30426 Blast hits to 17112 proteins in 741 species: Archae - 12; Bacteria - 974; Metazoa - 19200; Fungi - 2749; Plants - 2550; Viruses - 546; Other Eukaryotes - 4395 (source: NCBI BLink).  protein_id AT1G02840.3p  transcript_id AT1G02840.3  protein_id AT1G02840.3p  transcript_id AT1G02840.3  
At1g02850	chr1:000630569	0.0	W/630569-630703,630832-630895,630978-631033,631104-631179,631265-631336,631431-631518,631603-631858,631928-632043,632128-632348,632421-632449,632528-632615,632716-632806,632884-633085	AT1G02850.2  CDS  gene_syn BETA GLUCOSIDASE 11, BGLU11, F22D16.15, F22D16_15  gene BGLU11  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU11 (BETA GLUCOSIDASE 11); hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 11 (BGLU11); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: BGLU3 (BETA GLUCOSIDASE 2); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT4G22100.1); Has 5757 Blast hits to 5510 proteins in 795 species: Archae - 98; Bacteria - 3123; Metazoa - 605; Fungi - 137; Plants - 850; Viruses - 0; Other Eukaryotes - 944 (source: NCBI BLink).  protein_id AT1G02850.2p  transcript_id AT1G02850.2  protein_id AT1G02850.2p  transcript_id AT1G02850.2  
At1g02850	chr1:000630569	0.0	W/630569-630703,630832-630895,630978-631033,631104-631179,631265-631336,631431-631518,631603-631858,632000-632043,632128-632348,632421-632449,632528-632615,632716-632806,632884-633085	AT1G02850.3  CDS  gene_syn BETA GLUCOSIDASE 11, BGLU11, F22D16.15, F22D16_15  gene BGLU11  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU11 (BETA GLUCOSIDASE 11); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 11 (BGLU11); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU3 (BETA GLUCOSIDASE 2); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT4G22100.1); Has 5741 Blast hits to 5507 proteins in 795 species: Archae - 98; Bacteria - 3116; Metazoa - 605; Fungi - 137; Plants - 849; Viruses - 0; Other Eukaryotes - 936 (source: NCBI BLink).  protein_id AT1G02850.3p  transcript_id AT1G02850.3  protein_id AT1G02850.3p  transcript_id AT1G02850.3  
At1g02850	chr1:000630569	0.0	W/630569-630703,630832-630895,630978-631033,631104-631179,631265-631336,631431-631518,631603-631858,632009-632043,632128-632348,632421-632449,632528-632615,632716-632806,632884-633085	AT1G02850.1  CDS  gene_syn BETA GLUCOSIDASE 11, BGLU11, F22D16.15, F22D16_15  gene BGLU11  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU11 (BETA GLUCOSIDASE 11); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 11 (BGLU11); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU3 (BETA GLUCOSIDASE 2); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT4G22100.1); Has 5733 Blast hits to 5503 proteins in 795 species: Archae - 98; Bacteria - 3112; Metazoa - 602; Fungi - 137; Plants - 849; Viruses - 0; Other Eukaryotes - 935 (source: NCBI BLink).  protein_id AT1G02850.1p  transcript_id AT1G02850.1  protein_id AT1G02850.1p  transcript_id AT1G02850.1  
At1g02850	chr1:000630569	0.0	W/630569-630703,630832-630895,630978-631033,631104-631179,631265-631336,631431-631518,631603-632043,632128-632348,632421-632449,632528-632615,632716-632806,632881-633085	AT1G02850.4  CDS  gene_syn BETA GLUCOSIDASE 11, BGLU11, F22D16.15, F22D16_15  gene BGLU11  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU11 (BETA GLUCOSIDASE 11); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 11 (BGLU11); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU3 (BETA GLUCOSIDASE 2); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT4G22100.1); Has 582 Blast hits to 531 proteins in 116 species: Archae - 3; Bacteria - 338; Metazoa - 157; Fungi - 24; Plants - 52; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G02850.4p  transcript_id AT1G02850.4  protein_id AT1G02850.4p  transcript_id AT1G02850.4  
At1g02850	chr1:000630569	0.0	W/630569-630703,630832-630895,630978-631033,631104-631179,631265-631336,631431-631518,631603-632043,632128-632348,632421-632449,632528-632615,632716-632806,632884-633085	AT1G02850.5  CDS  gene_syn BETA GLUCOSIDASE 11, BGLU11, F22D16.15, F22D16_15  gene BGLU11  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU11 (BETA GLUCOSIDASE 11); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 11 (BGLU11); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU3 (BETA GLUCOSIDASE 2); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT4G22100.1); Has 5889 Blast hits to 5505 proteins in 795 species: Archae - 103; Bacteria - 3198; Metazoa - 607; Fungi - 137; Plants - 876; Viruses - 0; Other Eukaryotes - 968 (source: NCBI BLink).  protein_id AT1G02850.5p  transcript_id AT1G02850.5  protein_id AT1G02850.5p  transcript_id AT1G02850.5  
At1g02860	chr1:000635474	0.0	W/635474-635651,635739-635986,636081-636359,636592-636729,636828-636886,636978-637083	AT1G02860.1  CDS  gene_syn BAH1, BENZOIC ACID HYPERSENSITIVE 1, F22D16.14, F22D16_14, NLA, nitrogen limitation adaptation  gene NLA  function Encodes a likely ubiquitin E3 ligase with RING and SPX domains that is involved in mediating immune responses.  go_component nucleus|GO:0005634|17355433|IDA  go_process plant-type hypersensitive response|GO:0009626|18753285|IMP  go_process systemic acquired resistance|GO:0009627|18753285|IMP  go_process salicylic acid biosynthetic process|GO:0009697|18753285|IMP  go_process response to salicylic acid stimulus|GO:0009751|18753285|IEP  go_process response to nitrate|GO:0010167|17355433|IMP  go_process regulation of salicylic acid metabolic process|GO:0010337|18753285|IMP  go_process defense response to bacterium|GO:0042742|18753285|IMP  go_process response to benzoic acid stimulus|GO:0080021|18753285|IEP  go_process response to benzoic acid stimulus|GO:0080021|18753285|IMP  go_function ubiquitin-protein ligase activity|GO:0004842|18753285|TAS  product NLA (nitrogen limitation adaptation); ubiquitin-protein ligase  note nitrogen limitation adaptation (NLA); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: in 8 processes; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related (TAIR:AT2G38920.1); Has 1618 Blast hits to 1606 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 1274; Fungi - 87; Plants - 128; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).  protein_id AT1G02860.1p  transcript_id AT1G02860.1  protein_id AT1G02860.1p  transcript_id AT1G02860.1  
At1g02860	chr1:000635474	0.0	W/635474-635651,635739-635986,636081-636359,636592-636729,636828-636886,636984-637083	AT1G02860.2  CDS  gene_syn BAH1, BENZOIC ACID HYPERSENSITIVE 1, F22D16.14, F22D16_14, NLA, nitrogen limitation adaptation  gene NLA  function Encodes a likely ubiquitin E3 ligase with RING and SPX domains that is involved in mediating immune responses.  go_component nucleus|GO:0005634|17355433|IDA  go_process plant-type hypersensitive response|GO:0009626|18753285|IMP  go_process systemic acquired resistance|GO:0009627|18753285|IMP  go_process salicylic acid biosynthetic process|GO:0009697|18753285|IMP  go_process response to salicylic acid stimulus|GO:0009751|18753285|IEP  go_process response to nitrate|GO:0010167|17355433|IMP  go_process regulation of salicylic acid metabolic process|GO:0010337|18753285|IMP  go_process defense response to bacterium|GO:0042742|18753285|IMP  go_process response to benzoic acid stimulus|GO:0080021|18753285|IEP  go_process response to benzoic acid stimulus|GO:0080021|18753285|IMP  go_function ubiquitin-protein ligase activity|GO:0004842|18753285|TAS  product NLA (nitrogen limitation adaptation); ubiquitin-protein ligase  note nitrogen limitation adaptation (NLA); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: in 8 processes; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related (TAIR:AT2G38920.2); Has 1544 Blast hits to 1532 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 1198; Fungi - 88; Plants - 127; Viruses - 1; Other Eukaryotes - 130 (source: NCBI BLink).  protein_id AT1G02860.2p  transcript_id AT1G02860.2  protein_id AT1G02860.2p  transcript_id AT1G02860.2  
At1g02870	chr1:000638258	0.0	C/638258-638603,637602-637723,637401-637514	AT1G02870.1  CDS  gene_syn F22D16.13, F22D16_13  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 68 Blast hits to 68 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 46; Plants - 21; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G02870.1p  transcript_id AT1G02870.1  protein_id AT1G02870.1p  transcript_id AT1G02870.1  
At1g02880	chr1:000643877	0.0	C/643877-643921,643644-643745,643305-643554,643063-643208	AT1G02880.4  CDS  gene_syn F22D16.12, F22D16_12, THIAMIN PYROPHOSPHOKINASE1, TPK1  gene TPK1  function Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine.  go_component cytosol|GO:0005829|17611796|IDA  go_process thiamin metabolic process|GO:0006772|17611796|IGI  go_process thiamin metabolic process|GO:0006772||ISS  go_function thiamin diphosphokinase activity|GO:0004788|17611796|IDA  go_function thiamin diphosphokinase activity|GO:0004788||ISS  product TPK1 (THIAMIN PYROPHOSPHOKINASE1); thiamin diphosphokinase  note THIAMIN PYROPHOSPHOKINASE1 (TPK1); FUNCTIONS IN: thiamin diphosphokinase activity; INVOLVED IN: thiamin metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Thiamin pyrophosphokinase, vitamin B1-binding region (InterPro:IPR007373), Thiamin pyrophosphokinase (InterPro:IPR006282), Thiamin pyrophosphokinase, catalytic region (InterPro:IPR007371); BEST Arabidopsis thaliana protein match is: TPK2 (Thiamin pyrophosphokinase 2); thiamin diphosphokinase (TAIR:AT2G44750.2); Has 584 Blast hits to 584 proteins in 211 species: Archae - 0; Bacteria - 172; Metazoa - 115; Fungi - 86; Plants - 45; Viruses - 0; Other Eukaryotes - 166 (source: NCBI BLink).  protein_id AT1G02880.4p  transcript_id AT1G02880.4  protein_id AT1G02880.4p  transcript_id AT1G02880.4  
At1g02880	chr1:000643877	0.0	C/643877-643972,643644-643745,643305-643554,643063-643208	AT1G02880.1  CDS  gene_syn F22D16.12, F22D16_12, THIAMIN PYROPHOSPHOKINASE1, TPK1  gene TPK1  function Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine.  go_component cytosol|GO:0005829|17611796|IDA  go_process thiamin metabolic process|GO:0006772|17611796|IGI  go_process thiamin metabolic process|GO:0006772||ISS  go_function thiamin diphosphokinase activity|GO:0004788|17611796|IDA  go_function thiamin diphosphokinase activity|GO:0004788||ISS  product TPK1 (THIAMIN PYROPHOSPHOKINASE1); thiamin diphosphokinase  note THIAMIN PYROPHOSPHOKINASE1 (TPK1); FUNCTIONS IN: thiamin diphosphokinase activity; INVOLVED IN: thiamin metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Thiamin pyrophosphokinase, vitamin B1-binding region (InterPro:IPR007373), Thiamin pyrophosphokinase (InterPro:IPR006282), Thiamin pyrophosphokinase, catalytic region (InterPro:IPR007371); BEST Arabidopsis thaliana protein match is: TPK2 (Thiamin pyrophosphokinase 2); thiamin diphosphokinase (TAIR:AT2G44750.2); Has 765 Blast hits to 765 proteins in 268 species: Archae - 0; Bacteria - 282; Metazoa - 115; Fungi - 88; Plants - 44; Viruses - 0; Other Eukaryotes - 236 (source: NCBI BLink).  protein_id AT1G02880.1p  transcript_id AT1G02880.1  protein_id AT1G02880.1p  transcript_id AT1G02880.1  
At1g02880	chr1:000644350	0.0	C/644350-644476,644160-644256,643877-643949,643644-643745,643305-643554,643063-643208	AT1G02880.2  CDS  gene_syn F22D16.12, F22D16_12, THIAMIN PYROPHOSPHOKINASE1, TPK1  gene TPK1  function Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine.  go_component cytosol|GO:0005829|17611796|IDA  go_process thiamin metabolic process|GO:0006772|17611796|IGI  go_process thiamin metabolic process|GO:0006772||ISS  go_function thiamin diphosphokinase activity|GO:0004788|17611796|IDA  go_function thiamin diphosphokinase activity|GO:0004788||ISS  product TPK1 (THIAMIN PYROPHOSPHOKINASE1); thiamin diphosphokinase  note THIAMIN PYROPHOSPHOKINASE1 (TPK1); FUNCTIONS IN: thiamin diphosphokinase activity; INVOLVED IN: thiamin metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Thiamin pyrophosphokinase, vitamin B1-binding region (InterPro:IPR007373), Thiamin pyrophosphokinase, eukaryotic (InterPro:IPR016966), Thiamin pyrophosphokinase (InterPro:IPR006282), Thiamin pyrophosphokinase, catalytic region (InterPro:IPR007371); BEST Arabidopsis thaliana protein match is: TPK2 (Thiamin pyrophosphokinase 2); thiamin diphosphokinase (TAIR:AT2G44750.2); Has 813 Blast hits to 813 proteins in 283 species: Archae - 0; Bacteria - 306; Metazoa - 116; Fungi - 91; Plants - 46; Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink).  protein_id AT1G02880.2p  transcript_id AT1G02880.2  protein_id AT1G02880.2p  transcript_id AT1G02880.2  
At1g02880	chr1:000644350	0.0	C/644350-644485,644160-644256,643877-643949,643644-643745,643305-643554,643063-643208	AT1G02880.3  CDS  gene_syn F22D16.12, F22D16_12, THIAMIN PYROPHOSPHOKINASE1, TPK1  gene TPK1  function Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine.  go_component cytosol|GO:0005829|17611796|IDA  go_process thiamin metabolic process|GO:0006772|17611796|IGI  go_process thiamin metabolic process|GO:0006772||ISS  go_function thiamin diphosphokinase activity|GO:0004788|17611796|IDA  go_function thiamin diphosphokinase activity|GO:0004788||ISS  product TPK1 (THIAMIN PYROPHOSPHOKINASE1); thiamin diphosphokinase  note THIAMIN PYROPHOSPHOKINASE1 (TPK1); FUNCTIONS IN: thiamin diphosphokinase activity; INVOLVED IN: thiamin metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Thiamin pyrophosphokinase, vitamin B1-binding region (InterPro:IPR007373), Thiamin pyrophosphokinase, eukaryotic (InterPro:IPR016966), Thiamin pyrophosphokinase (InterPro:IPR006282), Thiamin pyrophosphokinase, catalytic region (InterPro:IPR007371); BEST Arabidopsis thaliana protein match is: TPK2 (Thiamin pyrophosphokinase 2); thiamin diphosphokinase (TAIR:AT2G44750.2); Has 813 Blast hits to 813 proteins in 283 species: Archae - 0; Bacteria - 306; Metazoa - 116; Fungi - 91; Plants - 46; Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink).  protein_id AT1G02880.3p  transcript_id AT1G02880.3  protein_id AT1G02880.3p  transcript_id AT1G02880.3  
At1g02890	chr1:000651711	0.0	C/651711-651797,651320-651539,651128-651219,650791-650904,650537-650709,649762-650445,649551-649675,649368-649459,648911-649139,648766-648829,648523-648656,648362-648432,648102-648275,647924-647995,647703-647807,647531-647620,647367-647442,647184-647280,647038-647107,646777-646956,646567-646689,646126-646310,645899-646037,645755-645814,645575-645679,645372-645485	AT1G02890.2  CDS  gene_syn F22D16.11, F22D16_11  go_component chloroplast|GO:0009507||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATPase activity|GO:0016887||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), SMAD/FHA domain (InterPro:IPR008984), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT4G02480.1); Has 19180 Blast hits to 17754 proteins in 1697 species: Archae - 836; Bacteria - 5167; Metazoa - 3754; Fungi - 2073; Plants - 1340; Viruses - 10; Other Eukaryotes - 6000 (source: NCBI BLink).  protein_id AT1G02890.2p  transcript_id AT1G02890.2  protein_id AT1G02890.2p  transcript_id AT1G02890.2  
At1g02890	chr1:000651711	0.0	C/651711-651797,651320-651539,651128-651219,650791-650904,650537-650709,649762-650445,649551-649675,649368-649459,648911-649139,648766-648829,648523-648656,648362-648432,648102-648275,647924-647995,647703-647807,647531-647620,647367-647442,647184-647280,647038-647107,646777-646956,646567-646689,646406-646489,646126-646310,645899-646037,645755-645814,645575-645679,645372-645485	AT1G02890.1  CDS  gene_syn F22D16.11, F22D16_11  go_component chloroplast|GO:0009507||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATPase activity|GO:0016887||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), SMAD/FHA domain (InterPro:IPR008984), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT4G02480.1); Has 23205 Blast hits to 21556 proteins in 1781 species: Archae - 951; Bacteria - 7411; Metazoa - 4074; Fungi - 2356; Plants - 1493; Viruses - 28; Other Eukaryotes - 6892 (source: NCBI BLink).  protein_id AT1G02890.1p  transcript_id AT1G02890.1  protein_id AT1G02890.1p  transcript_id AT1G02890.1  
At1g02900	chr1:000653976	0.0	C/653976-654338	AT1G02900.1  CDS  gene_syn ATRALF1, F22D16.10, F22D16_10, RALF-LIKE 1, RALF1, RALFL1, RAPID ALKALINIZATION FACTOR 1  gene RALF1  function Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  go_component apoplast|GO:0048046|12611624|ISS  go_process cell-cell signaling|GO:0007267|12611624|ISS  go_function signal transducer activity|GO:0004871|12611624|TAS  product RALF1 (RAPID ALKALINIZATION FACTOR 1); signal transducer  note RAPID ALKALINIZATION FACTOR 1 (RALF1); FUNCTIONS IN: signal transducer activity; INVOLVED IN: cell-cell signaling; LOCATED IN: apoplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALFL22 (ralf-like 22); signal transducer (TAIR:AT3G05490.1); Has 158 Blast hits to 158 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 156; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G02900.1p  transcript_id AT1G02900.1  protein_id AT1G02900.1p  transcript_id AT1G02900.1  
At1g02910	chr1:000657856	0.0	C/657856-658125,657392-657495,657142-657277,656827-657058,656588-656745,656317-656505,656134-656234,655933-656029,655749-655823	AT1G02910.1  CDS  gene_syn F22D16.9, F22D16_9, LOW PSII ACCUMULATION1, LPA1  gene LPA1  function Mutants defective in this gene were shown to have a reduced PSII content (overall reduction in the levels of several PSII subunits) and a disrupted grana stack structure. The N-terminal half of the protein contains two tetratricopeptide repeat (TPR) motifs that are arranged tandemly, each consisting of a 34-residue degenerate consensus sequence. The N-terminal sequence is rich in positive and hydroxylated amino acid residues.  go_component chloroplast|GO:0009507|18431481|IDA  go_function binding|GO:0005488||IEA  go_process photosystem II oxygen evolving complex assembly|GO:0010270|16531500|IMP  product LPA1 (LOW PSII ACCUMULATION1); binding  note LOW PSII ACCUMULATION1 (LPA1); FUNCTIONS IN: binding; INVOLVED IN: photosystem II oxygen evolving complex assembly; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28740.1); Has 119 Blast hits to 119 proteins in 33 species: Archae - 3; Bacteria - 42; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G02910.1p  transcript_id AT1G02910.1  protein_id AT1G02910.1p  transcript_id AT1G02910.1  
At1g02920	chr1:000659556	0.0	C/659556-659705,659423-659471,658886-659316	AT1G02920.1  CDS  gene_syn ATGSTF7, ATGSTF8, F22D16.8, F22D16_8, GLUTATHIONE S-TRANSFERASE 11, GST11, GSTF7  gene GSTF7  function Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).  go_component vacuole|GO:0005773|15539469|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process response to cadmium ion|GO:0046686|17075075|IEP  go_function copper ion binding|GO:0005507|16526091|IDA  go_function glutathione binding|GO:0043295|15159623|IDA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|12090627|NAS  go_component cytoplasm|GO:0005737|15610358|IDA  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product GSTF7; copper ion binding / glutathione binding / glutathione transferase  note GSTF7; FUNCTIONS IN: glutathione transferase activity, copper ion binding, glutathione binding; INVOLVED IN: response to cadmium ion, response to salt stress, defense response to bacterium, toxin catabolic process; LOCATED IN: nucleus, vacuole, cytoplasm; EXPRESSED IN: root, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTF6 (GLUTATHIONE S-TRANSFERASE); copper ion binding / glutathione binding / glutathione transferase (TAIR:AT1G02930.1); Has 8010 Blast hits to 8005 proteins in 880 species: Archae - 0; Bacteria - 3838; Metazoa - 1332; Fungi - 426; Plants - 719; Viruses - 0; Other Eukaryotes - 1695 (source: NCBI BLink).  protein_id AT1G02920.1p  transcript_id AT1G02920.1  protein_id AT1G02920.1p  transcript_id AT1G02920.1  
At1g02930	chr1:000662042	0.0	C/662042-662191,661901-661949,661363-661790	AT1G02930.1  CDS  gene_syn ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ATGSTF3, ATGSTF6, EARLY RESPONSIVE TO DEHYDRATION 11, ERD11, F22D16.7, F22D16_7, GLUTATHIONE S-TRANSFERASE, GLUTATHIONE S-TRANSFERASE 1, GLUTATHIONE S-TRANSFERASE 6, GST1, GSTF6  gene ATGSTF6  function Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cell wall|GO:0005618|16287169|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process response to cadmium ion|GO:0046686|17075075|IEP  go_function copper ion binding|GO:0005507|16526091|IDA  go_function glutathione binding|GO:0043295|15159623|IDA  go_component cytoplasm|GO:0005737|12090627|NAS  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process response to stress|GO:0006950||IEP  go_process response to oxidative stress|GO:0006979|12492832|IDA  go_process response to oxidative stress|GO:0006979|9501110|IEP  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_process response to water deprivation|GO:0009414|8075396|IEP  go_process response to water deprivation|GO:0009414|8253194|IEP  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTF6 (GLUTATHIONE S-TRANSFERASE); copper ion binding / glutathione binding / glutathione transferase  note GLUTATHIONE S-TRANSFERASE (ATGSTF6); FUNCTIONS IN: glutathione transferase activity, copper ion binding, glutathione binding; INVOLVED IN: in 7 processes; LOCATED IN: mitochondrion, cell wall, vacuole, cytoplasm; EXPRESSED IN: fruit, root, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: GSTF7; copper ion binding / glutathione binding / glutathione transferase (TAIR:AT1G02920.1); Has 8468 Blast hits to 8463 proteins in 939 species: Archae - 0; Bacteria - 4029; Metazoa - 1462; Fungi - 377; Plants - 818; Viruses - 0; Other Eukaryotes - 1782 (source: NCBI BLink).  protein_id AT1G02930.1p  transcript_id AT1G02930.1  protein_id AT1G02930.1p  transcript_id AT1G02930.1  
At1g02940	chr1:000664017	0.0	C/664017-664128,663760-663902,663615-663663,663079-663545	AT1G02940.1  CDS  gene_syn ATGSTF5, F22D16.6, F22D16_6, GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5, GSTF5  gene GSTF5  function Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cytoplasm|GO:0005737|12090627|NAS  go_component mitochondrion|GO:0005739|14671022|IDA  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product GSTF5 (GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5); glutathione transferase  note GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5 (GSTF5); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: N-terminal protein myristoylation, toxin catabolic process; LOCATED IN: mitochondrion, cytoplasm; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Thioredoxin-like fold (InterPro:IPR012336), Glutathione S-transferase, N-terminal (InterPro:IPR004045); BEST Arabidopsis thaliana protein match is: ATGSTF4 (GLUTATHIONE S-TRANSFERASE F4); glutathione transferase (TAIR:AT1G02950.3); Has 10445 Blast hits to 10437 proteins in 917 species: Archae - 2; Bacteria - 5511; Metazoa - 1521; Fungi - 454; Plants - 763; Viruses - 0; Other Eukaryotes - 2194 (source: NCBI BLink).  protein_id AT1G02940.1p  transcript_id AT1G02940.1  protein_id AT1G02940.1p  transcript_id AT1G02940.1  
At1g02952	chr1:000665354	0.0	W/665354-666367	AT1G02952.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G02950  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G02952.1  
At1g02950	chr1:000666114	0.0	C/666114-666244,665858-665910,665308-665777	AT1G02950.4  CDS  gene_syn ATGSTF4, F22D16.5, F22D16_5, GLUTATHIONE S-TRANSFERASE 31, GLUTATHIONE S-TRANSFERASE F4, GST31  gene ATGSTF4  function Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTF4 (GLUTATHIONE S-TRANSFERASE F4); glutathione transferase  note GLUTATHIONE S-TRANSFERASE F4 (ATGSTF4); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933); BEST Arabidopsis thaliana protein match is: GSTF5 (GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5); glutathione transferase (TAIR:AT1G02940.1); Has 529 Blast hits to 529 proteins in 79 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 60; Plants - 453; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G02950.4p  transcript_id AT1G02950.4  protein_id AT1G02950.4p  transcript_id AT1G02950.4  
At1g02950	chr1:000666351	0.0	C/666351-666420,666114-666256,665862-665910,665308-665777	AT1G02950.1  CDS  gene_syn ATGSTF4, F22D16.5, F22D16_5, GLUTATHIONE S-TRANSFERASE 31, GLUTATHIONE S-TRANSFERASE F4, GST31  gene ATGSTF4  function Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTF4 (GLUTATHIONE S-TRANSFERASE F4); glutathione transferase  note GLUTATHIONE S-TRANSFERASE F4 (ATGSTF4); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: GSTF5 (GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5); glutathione transferase (TAIR:AT1G02940.1); Has 5399 Blast hits to 5394 proteins in 755 species: Archae - 0; Bacteria - 2403; Metazoa - 855; Fungi - 197; Plants - 605; Viruses - 0; Other Eukaryotes - 1339 (source: NCBI BLink).  protein_id AT1G02950.1p  transcript_id AT1G02950.1  protein_id AT1G02950.1p  transcript_id AT1G02950.1  
At1g02950	chr1:000666351	0.0	C/666351-666420,666114-666256,665862-665910,665308-665777	AT1G02950.3  CDS  gene_syn ATGSTF4, F22D16.5, F22D16_5, GLUTATHIONE S-TRANSFERASE 31, GLUTATHIONE S-TRANSFERASE F4, GST31  gene ATGSTF4  function Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTF4 (GLUTATHIONE S-TRANSFERASE F4); glutathione transferase  note GLUTATHIONE S-TRANSFERASE F4 (ATGSTF4); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: GSTF5 (GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5); glutathione transferase (TAIR:AT1G02940.1); Has 5399 Blast hits to 5394 proteins in 755 species: Archae - 0; Bacteria - 2403; Metazoa - 855; Fungi - 197; Plants - 605; Viruses - 0; Other Eukaryotes - 1339 (source: NCBI BLink).  protein_id AT1G02950.3p  transcript_id AT1G02950.3  protein_id AT1G02950.3p  transcript_id AT1G02950.3  
At1g02950	chr1:000666351	0.0	C/666351-666420,666114-666262,665862-665910,665308-665777	AT1G02950.2  CDS  gene_syn ATGSTF4, F22D16.5, F22D16_5, GLUTATHIONE S-TRANSFERASE 31, GLUTATHIONE S-TRANSFERASE F4, GST31  gene ATGSTF4  function Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTF4 (GLUTATHIONE S-TRANSFERASE F4); glutathione transferase  note GLUTATHIONE S-TRANSFERASE F4 (ATGSTF4); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: GSTF5 (GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5); glutathione transferase (TAIR:AT1G02940.1); Has 5415 Blast hits to 5410 proteins in 756 species: Archae - 0; Bacteria - 2409; Metazoa - 863; Fungi - 197; Plants - 613; Viruses - 0; Other Eukaryotes - 1333 (source: NCBI BLink).  protein_id AT1G02950.2p  transcript_id AT1G02950.2  protein_id AT1G02950.2p  transcript_id AT1G02950.2  
At1g02960	chr1:000669750	0.0	C/669750-669773,669620-669650,669461-669513,669227-669266,669079-669134,668856-668987,668613-668745,668173-668468,667957-668082,667735-667868,667541-667641,667325-667437	AT1G02960.3  CDS  gene_syn F22D16.4, F22D16_4  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02965.1); Has 63 Blast hits to 62 proteins in 27 species: Archae - 0; Bacteria - 2; Metazoa - 19; Fungi - 5; Plants - 14; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G02960.3p  transcript_id AT1G02960.3  protein_id AT1G02960.3p  transcript_id AT1G02960.3  
At1g02960	chr1:000669750	0.0	C/669750-669773,669620-669650,669461-669513,669227-669266,669079-669134,668856-668987,668613-668745,668173-668468,667957-668082,667735-667868,667541-667641,667373-667437,667151-667281,667002-667068	AT1G02960.1  CDS  gene_syn F22D16.4, F22D16_4  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02965.1); Has 64 Blast hits to 63 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 19; Fungi - 5; Plants - 15; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G02960.1p  transcript_id AT1G02960.1  protein_id AT1G02960.1p  transcript_id AT1G02960.1  
At1g02960	chr1:000669750	0.0	C/669750-669773,669620-669650,669461-669513,669227-669266,669079-669134,668856-668987,668613-668745,668173-668468,667957-668082,667735-667868,667541-667641,667373-667464,667151-667281,667002-667068	AT1G02960.2  CDS  gene_syn F22D16.4, F22D16_4  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02965.1); Has 81 Blast hits to 80 proteins in 39 species: Archae - 0; Bacteria - 4; Metazoa - 25; Fungi - 11; Plants - 15; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G02960.2p  transcript_id AT1G02960.2  protein_id AT1G02960.2p  transcript_id AT1G02960.2  
At1g02965	chr1:000672651	0.0	C/672651-672814,672518-672548,672332-672406,672106-672145,671919-671974,671661-671783	AT1G02965.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02960.3); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G02965.1p  transcript_id AT1G02965.1  protein_id AT1G02965.1p  transcript_id AT1G02965.1  
At1g02970	chr1:000673408	0.0	W/673408-673706,673964-674024,674099-674165,674441-674704,674813-674880,674968-675077,675187-675227,675340-675494,675592-675945,676044-676127	AT1G02970.1  CDS  gene_syn ARABIDOPSIS WEE1 KINASE HOMOLOG, ATWEE1, F22D16.3, F22D16_3, WEE1, WEE1-KINASE  gene WEE1  function Protein kinase that negatively regulates the entry into mitosis.  go_process DNA replication checkpoint|GO:0000076|17209125|IEP  go_process cell cycle arrest|GO:0007050|17209125|IEP  go_function protein kinase activity|GO:0004672|16856985|IDA  go_function kinase activity|GO:0016301||ISS  product WEE1 (ARABIDOPSIS WEE1 KINASE HOMOLOG); kinase/ protein kinase  note ARABIDOPSIS WEE1 KINASE HOMOLOG (WEE1); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: DNA replication checkpoint, cell cycle arrest; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CPK29; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT1G76040.2); Has 74407 Blast hits to 73361 proteins in 3002 species: Archae - 70; Bacteria - 6701; Metazoa - 34012; Fungi - 7315; Plants - 10592; Viruses - 376; Other Eukaryotes - 15341 (source: NCBI BLink).  protein_id AT1G02970.1p  transcript_id AT1G02970.1  protein_id AT1G02970.1p  transcript_id AT1G02970.1  
At1g02980	chr1:000677869	0.0	W/677869-678002,678094-678193,678289-678522,678592-678873,678971-679060,679148-679288,679368-679490,679578-679730,679821-679997,680103-680264,680341-680484,680559-680777,680858-681025,681111-681212	AT1G02980.1  CDS  gene_syn ATCUL2, CUL2, CULLIN 2, F22D16.2, F22D16_2  gene CUL2  function encodes an Arabidopsis cullin  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin protein ligase binding|GO:0031625||IEA  go_component SCF ubiquitin ligase complex|GO:0019005|12795696|ISS  go_process cell cycle|GO:0007049||ISS  product CUL2 (CULLIN 2); ubiquitin protein ligase binding  note CULLIN 2 (CUL2); FUNCTIONS IN: ubiquitin protein ligase binding; INVOLVED IN: cell cycle, ubiquitin-dependent protein catabolic process; LOCATED IN: SCF ubiquitin ligase complex, chloroplast envelope; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Cullin homology (InterPro:IPR016158), Cullin, N-terminal region (InterPro:IPR001373), Cullin repeat-like (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: ubiquitin protein ligase binding (TAIR:AT1G43140.1); Has 1643 Blast hits to 1621 proteins in 174 species: Archae - 0; Bacteria - 8; Metazoa - 804; Fungi - 327; Plants - 196; Viruses - 0; Other Eukaryotes - 308 (source: NCBI BLink).  protein_id AT1G02980.1p  transcript_id AT1G02980.1  protein_id AT1G02980.1p  transcript_id AT1G02980.1  
At1g02990	chr1:000686844	0.0	C/686844-686884,686679-686751,686505-686597,686056-686424,684864-685965,683402-684777,683175-683317,682732-682892,682243-682403,681724-681921	AT1G02990.2  CDS  gene_syn F22D16.1, F22D16_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT3G62900.1); Has 5176 Blast hits to 3822 proteins in 317 species: Archae - 10; Bacteria - 289; Metazoa - 2234; Fungi - 277; Plants - 207; Viruses - 11; Other Eukaryotes - 2148 (source: NCBI BLink).  protein_id AT1G02990.2p  transcript_id AT1G02990.2  protein_id AT1G02990.2p  transcript_id AT1G02990.2  
At1g02990	chr1:000686844	0.0	C/686844-686884,686679-686751,686505-686597,686056-686424,684864-685965,683402-684777,683175-683317,683065-683077	AT1G02990.1  CDS  gene_syn F22D16.1, F22D16_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT3G62900.1); Has 5071 Blast hits to 3731 proteins in 313 species: Archae - 10; Bacteria - 271; Metazoa - 2187; Fungi - 266; Plants - 194; Viruses - 11; Other Eukaryotes - 2132 (source: NCBI BLink).  protein_id AT1G02990.1p  transcript_id AT1G02990.1  protein_id AT1G02990.1p  transcript_id AT1G02990.1  
At1g03000	chr1:000692175	0.0	C/692175-692453,691443-692078,691121-691364,690757-690898,690399-690579,689985-690173,689532-689813,689251-689409,689036-689158,688679-688950,688458-688602,688281-688364,688057-688146	AT1G03000.1  CDS  gene_syn F10O3.18, F10O3_18, PEROXIN 6, PEX6  gene PEX6  function Encodes an apparent ATPase similar to yeast and human protein required for peroxisomal biogenesis. May facilitate recycling of PEX5, the peroxisomal matrix protein receptor, and thereby promote peroxisomal matrix protein import.  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process fatty acid beta-oxidation|GO:0006635|17478547|IMP  go_process protein import into peroxisome matrix|GO:0016558|14745029|IMP  go_process protein import into peroxisome matrix|GO:0016558|17478547|IMP  go_function ATPase activity|GO:0016887||ISS  product PEX6 (PEROXIN 6); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding  note PEROXIN 6 (PEX6); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein import into peroxisome matrix, fatty acid beta-oxidation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: cell division cycle protein 48, putative / CDC48, putative (TAIR:AT3G53230.1); Has 24319 Blast hits to 21520 proteins in 1795 species: Archae - 946; Bacteria - 7551; Metazoa - 4455; Fungi - 2626; Plants - 1800; Viruses - 24; Other Eukaryotes - 6917 (source: NCBI BLink).  protein_id AT1G03000.1p  transcript_id AT1G03000.1  protein_id AT1G03000.1p  transcript_id AT1G03000.1  
At1g03010	chr1:000693480	0.0	W/693480-693571,694117-694183,694280-695476,695547-695793,695887-696188	AT1G03010.1  CDS  gene_syn F10O3.17, F10O3_17  go_process response to light stimulus|GO:0009416||IEA  go_function signal transducer activity|GO:0004871||IEA  go_function protein binding|GO:0005515||IEA  go_process response to light stimulus|GO:0009416||ISS  go_function signal transducer activity|GO:0004871||ISS  product phototropic-responsive NPH3 family protein  note phototropic-responsive NPH3 family protein; FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: response to light stimulus; EXPRESSED IN: inflorescence meristem, leaf apex, cauline leaf, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: phototropic-responsive NPH3 family protein (TAIR:AT2G47860.1); Has 432 Blast hits to 419 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 428; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G03010.1p  transcript_id AT1G03010.1  protein_id AT1G03010.1p  transcript_id AT1G03010.1  
At1g03020	chr1:000698207	0.0	C/698207-698515	AT1G03020.1  CDS  gene_syn F10O3.16, F10O3_16  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  go_component cellular_component|GO:0005575||ND  go_function arsenate reductase (glutaredoxin) activity|GO:0008794||ISS  product glutaredoxin family protein  note glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutaredoxin subgroup (InterPro:IPR014025), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin family protein (TAIR:AT3G62930.1); Has 1106 Blast hits to 1104 proteins in 204 species: Archae - 0; Bacteria - 71; Metazoa - 291; Fungi - 226; Plants - 428; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT1G03020.1p  transcript_id AT1G03020.1  protein_id AT1G03020.1p  transcript_id AT1G03020.1  
At1g03022	chr1:000699121	0.0	W/699121-699246	AT1G03022.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G03022.1p  transcript_id AT1G03022.1  protein_id AT1G03022.1p  transcript_id AT1G03022.1  
At1g03030	chr1:000701621	0.0	W/701621-701681,701775-701875,701976-702019,702106-702183,702276-702468,702567-702597,702679-702737,702828-702901,703012-703098,703195-703256,703353-703381,703482-703568	AT1G03030.1  CDS  gene_syn F10O3.15, F10O3_15  go_component chloroplast|GO:0009507|18431481|IDA  go_function ATP binding|GO:0005524||IEA  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_process biosynthetic process|GO:0009058||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product phosphoribulokinase/uridine kinase family protein  note phosphoribulokinase/uridine kinase family protein; FUNCTIONS IN: kinase activity, phosphotransferase activity, alcohol group as acceptor, ATP binding; INVOLVED IN: biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uridine kinase (InterPro:IPR000764); Has 1794 Blast hits to 1794 proteins in 581 species: Archae - 7; Bacteria - 1124; Metazoa - 151; Fungi - 173; Plants - 39; Viruses - 0; Other Eukaryotes - 300 (source: NCBI BLink).  protein_id AT1G03030.1p  transcript_id AT1G03030.1  protein_id AT1G03030.1p  transcript_id AT1G03030.1  
At1g03040	chr1:000706101	0.0	C/706101-706457,705534-705656,705302-705367,705064-705129,704588-704668,704279-704494	AT1G03040.1  CDS  gene_syn F10O3.14, F10O3_14  go_component nucleus|GO:0005634||IEA  go_process acetyl-CoA biosynthetic process from pyruvate|GO:0006086||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, acetyl-CoA biosynthetic process from pyruvate; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: UNE12 (unfertilized embryo sac 12); DNA binding / transcription factor (TAIR:AT4G02590.2); Has 1617 Blast hits to 1617 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 0; Plants - 1602; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G03040.1p  transcript_id AT1G03040.1  protein_id AT1G03040.1p  transcript_id AT1G03040.1  
At1g03050	chr1:000707726	0.0	W/707726-708189,708304-708509,708601-709467,709598-709860	AT1G03050.1  CDS  gene_syn F10O3.13, F10O3_13  go_component clathrin coat|GO:0030118||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process clathrin coat assembly|GO:0048268||IEA  go_function phospholipid binding|GO:0005543||IEA  go_function phosphatidylinositol binding|GO:0005545||IEA  go_function clathrin binding|GO:0030276||IEA  go_function binding|GO:0005488||ISS  product epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related  note epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related; FUNCTIONS IN: phospholipid binding, clathrin binding, binding, phosphatidylinositol binding; INVOLVED IN: N-terminal protein myristoylation, clathrin coat assembly; LOCATED IN: clathrin coat; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942), Clathrin adaptor, phosphoinositide-binding, GAT-like (InterPro:IPR014712); BEST Arabidopsis thaliana protein match is: epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (TAIR:AT4G02650.1); Has 1593 Blast hits to 1129 proteins in 163 species: Archae - 4; Bacteria - 34; Metazoa - 881; Fungi - 155; Plants - 233; Viruses - 12; Other Eukaryotes - 274 (source: NCBI BLink).  protein_id AT1G03050.1p  transcript_id AT1G03050.1  protein_id AT1G03050.1p  transcript_id AT1G03050.1  
At1g03055	chr1:000711505	0.0	C/711505-711763,711263-711408,711092-711184,710912-711016	AT1G03055.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64680.1); Has 40 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G03055.2p  transcript_id AT1G03055.2  protein_id AT1G03055.2p  transcript_id AT1G03055.2  
At1g03055	chr1:000711505	0.0	C/711505-711763,711263-711408,711092-711184,710955-711016,710695-710801,710241-710333,710102-710136	AT1G03055.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64680.1); Has 63 Blast hits to 63 proteins in 14 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G03055.1p  transcript_id AT1G03055.1  protein_id AT1G03055.1p  transcript_id AT1G03055.1  
At1g03060	chr1:000726710	0.0	C/726710-726891,726275-726347,726037-726122,725689-725824,725552-725608,725236-725409,724890-725081,724681-724746,724275-724389,722966-724119,722116-722815,721905-722007,720681-721795,718935-720585,715660-718662,715007-715315,714558-714864,714317-714463,712971-714206	AT1G03060.1  CDS  gene_syn F10O3.12, F10O3_12  go_function binding|GO:0005488||IEA  go_process signal transduction|GO:0007165||ISS  product WD-40 repeat family protein / beige-related  note WD-40 repeat family protein / beige-related; FUNCTIONS IN: binding; INVOLVED IN: signal transduction; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Beige/BEACH (InterPro:IPR000409), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein / beige-related (TAIR:AT4G02660.1); Has 6446 Blast hits to 4823 proteins in 277 species: Archae - 4; Bacteria - 1008; Metazoa - 3138; Fungi - 867; Plants - 406; Viruses - 0; Other Eukaryotes - 1023 (source: NCBI BLink).  protein_id AT1G03060.1p  transcript_id AT1G03060.1  protein_id AT1G03060.1p  transcript_id AT1G03060.1  
At1g03070	chr1:000730148	0.0	W/730148-730415,730497-730610,730916-731073,731176-731379	AT1G03070.1  CDS  gene_syn F10O3.11, F10O3_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function glutamate binding|GO:0016595||ISS  product glutamate binding  note glutamate binding; FUNCTIONS IN: glutamate binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0005 (InterPro:IPR006214); BEST Arabidopsis thaliana protein match is: glutamate binding (TAIR:AT4G02690.1); Has 3927 Blast hits to 3927 proteins in 938 species: Archae - 0; Bacteria - 1737; Metazoa - 709; Fungi - 89; Plants - 119; Viruses - 54; Other Eukaryotes - 1219 (source: NCBI BLink).  protein_id AT1G03070.1p  transcript_id AT1G03070.1  protein_id AT1G03070.1p  transcript_id AT1G03070.1  
At1g03080	chr1:000737233	0.0	C/737233-737332,732928-737081,731794-732741	AT1G03080.1  CDS  gene_syn F10O3.10, F10O3_10  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053), KIP1-like (InterPro:IPR011684); BEST Arabidopsis thaliana protein match is: kinase interacting family protein (TAIR:AT3G22790.1); Has 169162 Blast hits to 69460 proteins in 2232 species: Archae - 2114; Bacteria - 24914; Metazoa - 82448; Fungi - 11850; Plants - 6375; Viruses - 760; Other Eukaryotes - 40701 (source: NCBI BLink).  protein_id AT1G03080.1p  transcript_id AT1G03080.1  protein_id AT1G03080.1p  transcript_id AT1G03080.1  
At1g03090	chr1:000739715	0.0	W/739715-740050,740124-740245,740355-740502,740620-740757,740970-741065,741148-741207,741509-741601,741684-741795,741946-742050,742181-742317,742502-742736,742822-742982,743090-743203,743301-743546,743620-743716,743815-743819	AT1G03090.2  CDS  gene_syn MCCA  gene MCCA  function MCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion.  go_component mitochondrion|GO:0005739|18385124|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component mitochondrion|GO:0005739|12068107|IDA  go_process leucine catabolic process|GO:0006552|12068107|IDA  go_function methylcrotonoyl-CoA carboxylase activity|GO:0004485|12068107|IDA  product MCCA; methylcrotonoyl-CoA carboxylase  note MCCA; FUNCTIONS IN: methylcrotonoyl-CoA carboxylase activity; INVOLVED IN: leucine catabolic process; LOCATED IN: mitochondrion, cytosolic ribosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089), Carbamoyl phosphate synthetase, large subunit, ATP-binding (InterPro:IPR005479), Carbamoyl phosphate synthase, large subunit, N-terminal (InterPro:IPR005481), PreATP-grasp-like fold (InterPro:IPR016185), Biotin-binding site (InterPro:IPR001882), Biotin carboxylation region (InterPro:IPR011764), ATP-grasp fold (InterPro:IPR011761), Biotin carboxylase, C-terminal (InterPro:IPR005482), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), Pre-ATP-grasp fold (InterPro:IPR013817), Rudiment single hybrid motif (InterPro:IPR011054); BEST Arabidopsis thaliana protein match is: CAC2; acetyl-CoA carboxylase/ biotin carboxylase (TAIR:AT5G35360.1); Has 27432 Blast hits to 23731 proteins in 2048 species: Archae - 438; Bacteria - 14075; Metazoa - 1293; Fungi - 738; Plants - 543; Viruses - 0; Other Eukaryotes - 10345 (source: NCBI BLink).  protein_id AT1G03090.2p  transcript_id AT1G03090.2  protein_id AT1G03090.2p  transcript_id AT1G03090.2  
At1g03090	chr1:000739715	0.0	W/739715-740050,740124-740245,740355-740502,740620-740757,740970-741065,741509-741601,741684-741795,741946-742050,742181-742317,742502-742736,742822-742982,743090-743203,743301-743546,743620-743716,743815-743819	AT1G03090.1  CDS  gene_syn MCCA  gene MCCA  function MCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion.  go_component mitochondrion|GO:0005739|18385124|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component mitochondrion|GO:0005739|12068107|IDA  go_process leucine catabolic process|GO:0006552|12068107|IDA  go_function methylcrotonoyl-CoA carboxylase activity|GO:0004485|12068107|IDA  product MCCA; methylcrotonoyl-CoA carboxylase  note MCCA; FUNCTIONS IN: methylcrotonoyl-CoA carboxylase activity; INVOLVED IN: leucine catabolic process; LOCATED IN: mitochondrion, cytosolic ribosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089), Carbamoyl phosphate synthase, large subunit, N-terminal (InterPro:IPR005481), Carbamoyl phosphate synthetase, large subunit, ATP-binding (InterPro:IPR005479), PreATP-grasp-like fold (InterPro:IPR016185), Biotin-binding site (InterPro:IPR001882), Biotin carboxylation region (InterPro:IPR011764), Biotin carboxylase, C-terminal (InterPro:IPR005482), ATP-grasp fold (InterPro:IPR011761), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), Rudiment single hybrid motif (InterPro:IPR011054), Pre-ATP-grasp fold (InterPro:IPR013817); BEST Arabidopsis thaliana protein match is: CAC2; acetyl-CoA carboxylase/ biotin carboxylase (TAIR:AT5G35360.1); Has 23363 Blast hits to 20935 proteins in 1747 species: Archae - 377; Bacteria - 11833; Metazoa - 763; Fungi - 593; Plants - 534; Viruses - 0; Other Eukaryotes - 9263 (source: NCBI BLink).  protein_id AT1G03090.1p  transcript_id AT1G03090.1  protein_id AT1G03090.1p  transcript_id AT1G03090.1  
At1g03100	chr1:000744026	0.0	C/744026-746407	AT1G03100.1  CDS  gene_syn F10O3.8, F10O3_8  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G69290.1); Has 4755 Blast hits to 2316 proteins in 91 species: Archae - 0; Bacteria - 27; Metazoa - 106; Fungi - 14; Plants - 4500; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT1G03100.1p  transcript_id AT1G03100.1  protein_id AT1G03100.1p  transcript_id AT1G03100.1  
At1g03103	chr1:000747219	0.0	W/747219-747531,747622-747726,747858-747955	AT1G03103.1  CDS  go_process lipid transport|GO:0006869||IEA  go_component membrane|GO:0016020|11152613|ISS  go_function molecular_function|GO:0003674||ND  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lipid transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT3G22600.1); Has 661 Blast hits to 612 proteins in 56 species: Archae - 7; Bacteria - 29; Metazoa - 10; Fungi - 5; Plants - 536; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT1G03103.1p  transcript_id AT1G03103.1  protein_id AT1G03103.1p  transcript_id AT1G03103.1  
At1g03106	chr1:000748442	0.0	C/748442-748639	AT1G03106.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G03106.1p  transcript_id AT1G03106.1  protein_id AT1G03106.1p  transcript_id AT1G03106.1  
At1g03110	chr1:000749359	0.0	W/749359-749495,749785-749949,750118-750298,750416-750472,750557-750627,750796-750874,750957-751016,751120-751223,751297-751357,751428-751796	AT1G03110.1  CDS  gene_syn F10O3.6, F10O3_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein / katanin p80 subunit, putative (TAIR:AT1G61210.1); Has 10142 Blast hits to 5991 proteins in 342 species: Archae - 38; Bacteria - 2987; Metazoa - 3498; Fungi - 1909; Plants - 650; Viruses - 0; Other Eukaryotes - 1060 (source: NCBI BLink).  protein_id AT1G03110.1p  transcript_id AT1G03110.1  protein_id AT1G03110.1p  transcript_id AT1G03110.1  
At1g03120	chr1:000752271	0.0	W/752271-752660,752982-753140	AT1G03120.1  CDS  gene_syn ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 28, ATRAB28, F10O3.5, F10O3_5  gene ATRAB28  function Atrab28 plays a role in the ion cell balance during late embryogenesis and germination.  go_component nucleus|GO:0005634|12175017|IDA  go_component nucleus|GO:0005634|12175017|ISS  go_component nucleolus|GO:0005730|12175017|IDA  go_process cellular ion homeostasis|GO:0006873|12175017|IMP  go_process multicellular organismal development|GO:0007275||ISS  go_process seed germination|GO:0009845|12175017|IMP  go_process response to lithium ion|GO:0010226|12175017|IMP  product ATRAB28  note ATRAB28; INVOLVED IN: multicellular organismal development, response to lithium ion, cellular ion homeostasis, seed germination; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: procambium; CONTAINS InterPro DOMAIN/s: Seed maturation protein (InterPro:IPR007011); BEST Arabidopsis thaliana protein match is: seed maturation family protein (TAIR:AT5G27980.1); Has 95 Blast hits to 73 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G03120.1p  transcript_id AT1G03120.1  protein_id AT1G03120.1p  transcript_id AT1G03120.1  
At1g03130	chr1:000753528	0.0	C/753528-754142	AT1G03130.1  CDS  gene_syn PSAD-2, PSI-D, photosystem I subunit D-2  gene PSAD-2  function Encodes a protein predicted by sequence similarity with spinach PsaD to be photosystem I reaction center subunit II (PsaD2)  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process photosynthesis|GO:0015979||IEA  go_component photosystem I reaction center|GO:0009538||ISS  go_process photosynthesis|GO:0015979||ISS  go_function molecular_function|GO:0003674||ND  product PSAD-2 (photosystem I subunit D-2)  note photosystem I subunit D-2 (PSAD-2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I protein PsaD (InterPro:IPR003685); BEST Arabidopsis thaliana protein match is: PSAD-1 (photosystem I subunit D-1) (TAIR:AT4G02770.1); Has 444 Blast hits to 444 proteins in 112 species: Archae - 0; Bacteria - 121; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 1; Other Eukaryotes - 186 (source: NCBI BLink).  protein_id AT1G03130.1p  transcript_id AT1G03130.1  protein_id AT1G03130.1p  transcript_id AT1G03130.1  
At1g03140	chr1:000755381	0.0	C/755381-756223,754471-754890	AT1G03140.1  CDS  gene_syn F10O3.3, F10O3_3  go_component spliceosome|GO:0005681||IEA  go_process RNA splicing|GO:0008380||IEA  go_component spliceosome|GO:0005681||ISS  go_process RNA splicing|GO:0008380||ISS  product splicing factor Prp18 family protein  note splicing factor Prp18 family protein; INVOLVED IN: RNA splicing; LOCATED IN: spliceosome; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Pre-mRNA processing factor 4 (PRP4) like (InterPro:IPR014906), Splicing factor motif (InterPro:IPR003648), Prp18 (InterPro:IPR004098); BEST Arabidopsis thaliana protein match is: splicing factor Prp18 family protein (TAIR:AT1G54590.1); Has 509 Blast hits to 499 proteins in 150 species: Archae - 0; Bacteria - 4; Metazoa - 224; Fungi - 121; Plants - 35; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).  protein_id AT1G03140.1p  transcript_id AT1G03140.1  protein_id AT1G03140.1p  transcript_id AT1G03140.1  
At1g03150	chr1:000756461	0.0	W/756461-756538,756645-756735,757554-757686,757937-758006,758199-758259,758350-758441	AT1G03150.1  CDS  gene_syn F10O3.2, F10O3_2  go_process metabolic process|GO:0008152||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product GCN5-related N-acetyltransferase (GNAT) family protein  note GCN5-related N-acetyltransferase (GNAT) family protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: GCN5-related N-acetyltransferase, putative (TAIR:AT5G13780.1); Has 1587 Blast hits to 1587 proteins in 440 species: Archae - 135; Bacteria - 362; Metazoa - 485; Fungi - 260; Plants - 84; Viruses - 0; Other Eukaryotes - 261 (source: NCBI BLink).  protein_id AT1G03150.1p  transcript_id AT1G03150.1  protein_id AT1G03150.1p  transcript_id AT1G03150.1  
At1g03160	chr1:000761321	0.0	W/761321-761810,761886-762391,762510-762578,763013-763210,763299-763430,763980-764066,764157-764597,764699-764866,765025-765255,765485-765600,765753-766053	AT1G03160.1  CDS  gene_syn F10O3.1, F10O3_1, FZL, FZO-LIKE  gene FZL  function A new plant-specific member of the dynamin superfamily; defines a new protein class within the dynamin superfamily of membrane remodeling GTPases that regulates organization of the thylakoid network in plants. Targeted to chloroplasts and associated with thylakoid and envelope membranes as punctate structures. Knockout mutants have abnormalities in chloroplast and thylakoid morphology, including disorganized grana stacks and alterations in the relative proportions of grana and stroma thylakoids. Overexpression of FZL-GFP also conferred defects in thylakoid organization.  go_component chloroplast|GO:0009507|18431481|IDA  go_function GTPase activity|GO:0003924||IEA  go_function thiamin-phosphate diphosphorylase activity|GO:0004789||IEA  go_function GTP binding|GO:0005525||IEA  go_component chloroplast membrane|GO:0031969|16617119|IDA  go_process thylakoid membrane organization|GO:0010027|16617119|IMP  go_process vegetative to reproductive phase transition|GO:0010228|16617119|IMP  product FZL (FZO-LIKE); GTP binding / GTPase/ thiamin-phosphate diphosphorylase  note FZO-LIKE (FZL); FUNCTIONS IN: thiamin-phosphate diphosphorylase activity, GTP binding, GTPase activity; INVOLVED IN: thylakoid membrane organization, vegetative to reproductive phase transition; LOCATED IN: chloroplast membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiamine monophosphate synthase (InterPro:IPR003733), Dynamin, GTPase region (InterPro:IPR001401); Has 2427 Blast hits to 2247 proteins in 614 species: Archae - 35; Bacteria - 1764; Metazoa - 373; Fungi - 57; Plants - 35; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).  protein_id AT1G03160.1p  transcript_id AT1G03160.1  protein_id AT1G03160.1p  transcript_id AT1G03160.1  
At1g03160	chr1:000761321	0.0	W/761321-761810,761886-762391,762510-762578,763013-763210,763299-763430,763980-764066,764157-764597,764699-764931,765025-765091	AT1G03160.2  CDS  gene_syn F10O3.1, F10O3_1, FZL, FZO-LIKE  gene FZL  function A new plant-specific member of the dynamin superfamily; defines a new protein class within the dynamin superfamily of membrane remodeling GTPases that regulates organization of the thylakoid network in plants. Targeted to chloroplasts and associated with thylakoid and envelope membranes as punctate structures. Knockout mutants have abnormalities in chloroplast and thylakoid morphology, including disorganized grana stacks and alterations in the relative proportions of grana and stroma thylakoids. Overexpression of FZL-GFP also conferred defects in thylakoid organization.  go_component chloroplast|GO:0009507|18431481|IDA  go_function GTPase activity|GO:0003924||IEA  go_function thiamin-phosphate diphosphorylase activity|GO:0004789||IEA  go_function GTP binding|GO:0005525||IEA  go_component chloroplast membrane|GO:0031969|16617119|IDA  go_process thylakoid membrane organization|GO:0010027|16617119|IMP  go_process vegetative to reproductive phase transition|GO:0010228|16617119|IMP  product FZL (FZO-LIKE); GTP binding / GTPase/ thiamin-phosphate diphosphorylase  note FZO-LIKE (FZL); FUNCTIONS IN: thiamin-phosphate diphosphorylase activity, GTP binding, GTPase activity; INVOLVED IN: thylakoid membrane organization, vegetative to reproductive phase transition; LOCATED IN: chloroplast membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiamine monophosphate synthase (InterPro:IPR003733), Dynamin, GTPase region (InterPro:IPR001401); Has 2432 Blast hits to 2250 proteins in 614 species: Archae - 35; Bacteria - 1770; Metazoa - 373; Fungi - 57; Plants - 34; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).  protein_id AT1G03160.2p  transcript_id AT1G03160.2  protein_id AT1G03160.2p  transcript_id AT1G03160.2  
At1g03170	chr1:000769805	0.0	W/769805-770527	AT1G03170.1  CDS  gene_syn F15K9.22, F15K9_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02810.1); Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G03170.1p  transcript_id AT1G03170.1  protein_id AT1G03170.1p  transcript_id AT1G03170.1  
At1g03180	chr1:000773543	0.0	W/773543-773691,774096-774153,774231-774539,774652-774700,774785-774879,774968-775047,775122-775179	AT1G03180.1  CDS  gene_syn F15K9.21, F15K9_21  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G03180.1p  transcript_id AT1G03180.1  protein_id AT1G03180.1p  transcript_id AT1G03180.1  
At1g03180	chr1:000773989	0.0	W/773989-774153,774231-774539,774652-774700,774785-774879,774968-775047,775122-775179	AT1G03180.2  CDS  gene_syn F15K9.21, F15K9_21  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; Has 13 Blast hits to 13 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G03180.2p  transcript_id AT1G03180.2  protein_id AT1G03180.2p  transcript_id AT1G03180.2  
At1g03190	chr1:000775822	0.0	W/775822-776355,776482-776762,777155-777237,777336-777739,777872-778065,778153-778333,778486-778610,778807-778896,779002-779080,779174-779250,779538-779646,779744-779863	AT1G03190.1  CDS  gene_syn ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, ATXPD, ULTRAVIOLET HYPERSENSITIVE 6, UVH6  gene UVH6  function UV damage and heat induce a common stress response in plants that leads to tissue death and reduced chloroplast function. The UVH6 product is suggested to be a negative regulator of this response.  go_component nucleus|GO:0005634||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function ATP-dependent DNA helicase activity|GO:0004003||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides|GO:0016818||IEA  go_process DNA repair|GO:0006281|12857822|IMP  go_process response to heat|GO:0009408|15923322|IMP  go_process response to heat|GO:0009408|9414549|IMP  go_process response to UV|GO:0009411|9414549|IMP  product UVH6 (ULTRAVIOLET HYPERSENSITIVE 6); ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding  note ULTRAVIOLET HYPERSENSITIVE 6 (UVH6); FUNCTIONS IN: in 6 functions; INVOLVED IN: response to UV, DNA repair, response to heat; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Helicase, superfamily 1 and 2, ATP-binding, DinG/Rad3-type (InterPro:IPR014013), Xeroderma pigmentosum group D protein (InterPro:IPR001945), Helicase-like, DEXD box c2 type (InterPro:IPR006554), Helicase, ATP-dependent, c2 type (InterPro:IPR006555), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD2 (InterPro:IPR010614), DNA helicase (DNA repair), Rad3 type (InterPro:IPR013020), Protein of unknown function DUF1227 (InterPro:IPR010643); BEST Arabidopsis thaliana protein match is: helicase-related (TAIR:AT1G79950.1); Has 2121 Blast hits to 1696 proteins in 465 species: Archae - 180; Bacteria - 586; Metazoa - 533; Fungi - 241; Plants - 97; Viruses - 2; Other Eukaryotes - 482 (source: NCBI BLink).  protein_id AT1G03190.1p  transcript_id AT1G03190.1  protein_id AT1G03190.1p  transcript_id AT1G03190.1  
At1g03190	chr1:000775822	0.0	W/775822-776355,776482-776762,777155-777237,777336-777739,777872-778065,778153-778333,778486-778610,778807-778896,779002-779080,779174-779250,779538-779646,779744-779863	AT1G03190.2  CDS  gene_syn ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, ATXPD, ULTRAVIOLET HYPERSENSITIVE 6, UVH6  gene UVH6  function UV damage and heat induce a common stress response in plants that leads to tissue death and reduced chloroplast function. The UVH6 product is suggested to be a negative regulator of this response.  go_component nucleus|GO:0005634||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function ATP-dependent DNA helicase activity|GO:0004003||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides|GO:0016818||IEA  go_process DNA repair|GO:0006281|12857822|IMP  go_process response to heat|GO:0009408|15923322|IMP  go_process response to heat|GO:0009408|9414549|IMP  go_process response to UV|GO:0009411|9414549|IMP  product UVH6 (ULTRAVIOLET HYPERSENSITIVE 6); ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding  note ULTRAVIOLET HYPERSENSITIVE 6 (UVH6); FUNCTIONS IN: in 6 functions; INVOLVED IN: response to UV, DNA repair, response to heat; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Helicase, superfamily 1 and 2, ATP-binding, DinG/Rad3-type (InterPro:IPR014013), Xeroderma pigmentosum group D protein (InterPro:IPR001945), Helicase-like, DEXD box c2 type (InterPro:IPR006554), Helicase, ATP-dependent, c2 type (InterPro:IPR006555), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD2 (InterPro:IPR010614), DNA helicase (DNA repair), Rad3 type (InterPro:IPR013020), Protein of unknown function DUF1227 (InterPro:IPR010643); BEST Arabidopsis thaliana protein match is: helicase-related (TAIR:AT1G79950.1); Has 2121 Blast hits to 1696 proteins in 465 species: Archae - 180; Bacteria - 586; Metazoa - 533; Fungi - 241; Plants - 97; Viruses - 2; Other Eukaryotes - 482 (source: NCBI BLink).  protein_id AT1G03190.2p  transcript_id AT1G03190.2  protein_id AT1G03190.2p  transcript_id AT1G03190.2  
At1g03200	chr1:000780755	0.0	W/780755-780836,781081-781124	AT1G03200.1  CDS  gene_syn F15K9.24, F15K9_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03240.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G03200.1p  transcript_id AT1G03200.1  protein_id AT1G03200.1p  transcript_id AT1G03200.1  
At1g03210	chr1:000782948	0.0	W/782948-783175,783318-783596,783681-783842,783943-784026,784133-784240	AT1G03210.1  CDS  gene_syn F15K9.19, F15K9_19  go_component endomembrane system|GO:0012505||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function catalytic activity|GO:0003824||IEA  go_process biosynthetic process|GO:0009058||ISS  go_function catalytic activity|GO:0003824||ISS  product phenazine biosynthesis PhzC/PhzF family protein  note phenazine biosynthesis PhzC/PhzF family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phenazine biosynthesis PhzC/PhzF protein (InterPro:IPR003719); BEST Arabidopsis thaliana protein match is: catalytic (TAIR:AT4G02860.1); Has 2445 Blast hits to 2445 proteins in 666 species: Archae - 26; Bacteria - 1600; Metazoa - 99; Fungi - 79; Plants - 43; Viruses - 0; Other Eukaryotes - 598 (source: NCBI BLink).  protein_id AT1G03210.1p  transcript_id AT1G03210.1  protein_id AT1G03210.1p  transcript_id AT1G03210.1  
At1g03220	chr1:000787143	0.0	W/787143-788444	AT1G03220.1  CDS  gene_syn F15K9.17, F15K9_17  go_component cell wall|GO:0005618|14595688|IDA  go_component cell wall|GO:0005618|15593128|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_process response to salt stress|GO:0009651|11351099|IEP  product extracellular dermal glycoprotein, putative / EDGP, putative  note extracellular dermal glycoprotein, putative / EDGP, putative; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: response to salt stress; LOCATED IN: cell wall, plasma membrane, membrane, plant-type cell wall; EXPRESSED IN: stem, root, callus, pollen tube, leaf; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: extracellular dermal glycoprotein, putative / EDGP, putative (TAIR:AT1G03230.1); Has 790 Blast hits to 787 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 790; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G03220.1p  transcript_id AT1G03220.1  protein_id AT1G03220.1p  transcript_id AT1G03220.1  
At1g03230	chr1:000790110	0.0	W/790110-791414	AT1G03230.1  CDS  gene_syn F15K9.16, F15K9_16  go_component cell wall|GO:0005618|15593128|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  product extracellular dermal glycoprotein, putative / EDGP, putative  note extracellular dermal glycoprotein, putative / EDGP, putative; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: response to salt stress; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: extracellular dermal glycoprotein, putative / EDGP, putative (TAIR:AT1G03220.1); Has 798 Blast hits to 797 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 798; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G03230.1p  transcript_id AT1G03230.1  protein_id AT1G03230.1p  transcript_id AT1G03230.1  
At1g03240	chr1:000792754	0.0	C/792754-792838,792418-792461	AT1G03240.1  CDS  gene_syn F15K9.25, F15K9_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03200.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G03240.1p  transcript_id AT1G03240.1  protein_id AT1G03240.1p  transcript_id AT1G03240.1  
At1g03250	chr1:000795102	0.0	C/795102-795159,794899-794969,794542-794650,794328-794410,794022-794180,793829-793930,793576-793731	AT1G03250.1  CDS  gene_syn F15K9.15, F15K9_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 65 Blast hits to 65 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G03250.1p  transcript_id AT1G03250.1  protein_id AT1G03250.1p  transcript_id AT1G03250.1  
At1g03260	chr1:000798001	0.0	C/798001-798102,797728-797789,797546-797600,797313-797411,797041-797127,796776-796892,796536-796628,795988-796018,795678-795856	AT1G03260.1  CDS  gene_syn F15K9.14, F15K9_14  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19070.1); Has 3432 Blast hits to 3432 proteins in 730 species: Archae - 8; Bacteria - 1831; Metazoa - 239; Fungi - 87; Plants - 162; Viruses - 0; Other Eukaryotes - 1105 (source: NCBI BLink).  protein_id AT1G03260.1p  transcript_id AT1G03260.1  protein_id AT1G03260.1p  transcript_id AT1G03260.1  
At1g03270	chr1:000799191	0.0	W/799191-799431,799641-799717,799827-799910,799999-800112,800382-800465,800629-800700,800972-801039,801185-801272,801356-801429,801517-801889,802012-802058,802163-802223,802320-802436	AT1G03270.1  CDS  gene_syn F15K9.13, F15K9_13  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14240.1); Has 6515 Blast hits to 6357 proteins in 1347 species: Archae - 64; Bacteria - 4189; Metazoa - 291; Fungi - 188; Plants - 123; Viruses - 0; Other Eukaryotes - 1660 (source: NCBI BLink).  protein_id AT1G03270.1p  transcript_id AT1G03270.1  protein_id AT1G03270.1p  transcript_id AT1G03270.1  
At1g03280	chr1:000803635	0.0	W/803635-803687,803835-803957,804247-804367,804739-804852,804961-805070,805167-805350,805458-805652,805860-806087,806196-806409,806661-806758	AT1G03280.1  CDS  gene_syn F15K9.12, F15K9_12  go_component transcription factor TFIIE complex|GO:0005673||IEA  go_component endomembrane system|GO:0012505||IEA  go_process transcription initiation from RNA polymerase II promoter|GO:0006367||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  go_component transcription factor TFIIE complex|GO:0005673||ISS  go_function transcription initiation factor activity|GO:0016986||ISS  product transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein  note transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein; FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: endomembrane system, transcription factor TFIIE complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Transcription factor TFIIE, alpha subunit (InterPro:IPR002853), Transcription factor TFE/TFIIEalpha, HTH domain (InterPro:IPR017919); BEST Arabidopsis thaliana protein match is: RNA polymerase II transcription factor/ transcription initiation factor (TAIR:AT4G20340.1); Has 683 Blast hits to 606 proteins in 133 species: Archae - 3; Bacteria - 10; Metazoa - 347; Fungi - 130; Plants - 70; Viruses - 11; Other Eukaryotes - 112 (source: NCBI BLink).  protein_id AT1G03280.1p  transcript_id AT1G03280.1  protein_id AT1G03280.1p  transcript_id AT1G03280.1  
At1g03290	chr1:000807970	0.0	W/807970-808017,808229-808394,808532-809214,809409-809582,809672-809788,809911-810090,810188-810234,810380-810680	AT1G03290.1  CDS  gene_syn F15K9.11, F15K9_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02880.1); Has 10945 Blast hits to 7852 proteins in 686 species: Archae - 147; Bacteria - 1290; Metazoa - 5004; Fungi - 733; Plants - 317; Viruses - 53; Other Eukaryotes - 3401 (source: NCBI BLink).  protein_id AT1G03290.1p  transcript_id AT1G03290.1  protein_id AT1G03290.1p  transcript_id AT1G03290.1  
At1g03300	chr1:000812030	0.0	C/812030-813086,811033-811988	AT1G03300.1  CDS  gene_syn F15K9.10, F15K9_10  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product agenet domain-containing protein  note agenet domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein (TAIR:AT2G47230.1); Has 474 Blast hits to 388 proteins in 75 species: Archae - 2; Bacteria - 18; Metazoa - 141; Fungi - 31; Plants - 145; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).  protein_id AT1G03300.1p  transcript_id AT1G03300.1  protein_id AT1G03300.1p  transcript_id AT1G03300.1  
At1g03310	chr1:000813975	0.0	W/813975-816623	AT1G03310.1  CDS  gene_syn ARABIDOPSIS THALIANA ISOAMYLASE 2, ATISA2, BE2, BRANCHING ENZYME 2, DBE1, DEBRANCHING ENZYME 1, F15K9.9, F15K9_9, ISA2  gene DBE1  function Encodes a protein with strong similarity to isoamylase (EC:3.2.1.68) however lacks critical residues known to be important for activity. Appears to co localize with ISA1 in the chloroplast isoamylase complex. Mutations in this gene cause the loss of detectable isoamylase activity and the disruption of normal starch structure. It has been postulated that AtISA2 interacts with AtISA1 to form the Iso1 complex.  go_component chloroplast|GO:0009507|18431481|IDA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_process amylopectin biosynthetic process|GO:0010021|18815382|IMP  go_function alpha-amylase activity|GO:0004556||ISS  go_function isoamylase activity|GO:0019156|15743447|IMP  go_function isoamylase activity|GO:0019156|18815382|IDA  product isoamylase, putative / starch debranching enzyme, putative  note DEBRANCHING ENZYME 1 (DBE1); FUNCTIONS IN: isoamylase activity, alpha-amylase activity; INVOLVED IN: amylopectin biosynthetic process, carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 13, N-terminal (InterPro:IPR004193), Immunoglobulin E-set (InterPro:IPR014756), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic region (InterPro:IPR006047); BEST Arabidopsis thaliana protein match is: ISA3 (ISOAMYLASE 3); alpha-amylase/ isoamylase (TAIR:AT4G09020.1); Has 5747 Blast hits to 5734 proteins in 1167 species: Archae - 59; Bacteria - 4326; Metazoa - 119; Fungi - 138; Plants - 353; Viruses - 0; Other Eukaryotes - 752 (source: NCBI BLink).  protein_id AT1G03310.1p  transcript_id AT1G03310.1  protein_id AT1G03310.1p  transcript_id AT1G03310.1  
At1g03310	chr1:000813975	0.0	W/813975-816623	AT1G03310.2  CDS  gene_syn ARABIDOPSIS THALIANA ISOAMYLASE 2, ATISA2, BE2, BRANCHING ENZYME 2, DBE1, DEBRANCHING ENZYME 1, F15K9.9, F15K9_9, ISA2  gene DBE1  function Encodes a protein with strong similarity to isoamylase (EC:3.2.1.68) however lacks critical residues known to be important for activity. Appears to co localize with ISA1 in the chloroplast isoamylase complex. Mutations in this gene cause the loss of detectable isoamylase activity and the disruption of normal starch structure. It has been postulated that AtISA2 interacts with AtISA1 to form the Iso1 complex.  go_component chloroplast|GO:0009507|18431481|IDA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_process amylopectin biosynthetic process|GO:0010021|18815382|IMP  go_function alpha-amylase activity|GO:0004556||ISS  go_function isoamylase activity|GO:0019156|15743447|IMP  go_function isoamylase activity|GO:0019156|18815382|IDA  product isoamylase, putative / starch debranching enzyme, putative  note DEBRANCHING ENZYME 1 (DBE1); FUNCTIONS IN: isoamylase activity, alpha-amylase activity; INVOLVED IN: amylopectin biosynthetic process, carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 13, N-terminal (InterPro:IPR004193), Immunoglobulin E-set (InterPro:IPR014756), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic region (InterPro:IPR006047); BEST Arabidopsis thaliana protein match is: ISA3 (ISOAMYLASE 3); alpha-amylase/ isoamylase (TAIR:AT4G09020.1); Has 5747 Blast hits to 5734 proteins in 1167 species: Archae - 59; Bacteria - 4326; Metazoa - 119; Fungi - 138; Plants - 353; Viruses - 0; Other Eukaryotes - 752 (source: NCBI BLink).  protein_id AT1G03310.2p  transcript_id AT1G03310.2  protein_id AT1G03310.2p  transcript_id AT1G03310.2  
At1g03320	chr1:000817027	0.0	W/817027-817096,817175-817767	AT1G03320.1  CDS  gene_syn F15K9.8, F15K9_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1133 Blast hits to 723 proteins in 102 species: Archae - 4; Bacteria - 14; Metazoa - 406; Fungi - 130; Plants - 78; Viruses - 8; Other Eukaryotes - 493 (source: NCBI BLink).  protein_id AT1G03320.1p  transcript_id AT1G03320.1  protein_id AT1G03320.1p  transcript_id AT1G03320.1  
At1g03330	chr1:000819295	0.0	C/819295-819297,818920-819078,818161-818280	AT1G03330.1  CDS  gene_syn F15K9.7, F15K9_7  go_component nucleus|GO:0005634||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_function molecular_function|GO:0003674||ND  product small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative  note small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative; FUNCTIONS IN: molecular_function unknown; LOCATED IN: small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), U6 snRNA-associated Sm-like protein LSm2 (InterPro:IPR016654), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649); Has 577 Blast hits to 577 proteins in 157 species: Archae - 2; Bacteria - 0; Metazoa - 264; Fungi - 157; Plants - 51; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).  protein_id AT1G03330.1p  transcript_id AT1G03330.1  protein_id AT1G03330.1p  transcript_id AT1G03330.1  
At1g03340	chr1:000819712	0.0	W/819712-819783,819897-820077,820159-820501,820595-820666,820738-821227	AT1G03340.1  CDS  gene_syn F15K9.6, F15K9_6  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02920.1); Has 23 Blast hits to 22 proteins in 8 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G03340.1p  transcript_id AT1G03340.1  protein_id AT1G03340.1p  transcript_id AT1G03340.1  
At1g03350	chr1:000822834	0.0	C/822834-824246	AT1G03350.1  CDS  gene_syn F15K9.5, F15K9_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product BSD domain-containing protein  note BSD domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT4G13110.1); Has 9675 Blast hits to 5119 proteins in 484 species: Archae - 40; Bacteria - 3294; Metazoa - 2852; Fungi - 1070; Plants - 279; Viruses - 71; Other Eukaryotes - 2069 (source: NCBI BLink).  protein_id AT1G03350.1p  transcript_id AT1G03350.1  protein_id AT1G03350.1p  transcript_id AT1G03350.1  
At1g03360	chr1:000824653	0.0	W/824653-824813,824891-824992,825102-825147,825253-825342,825422-825487,825587-825655,825745-826179	AT1G03360.1  CDS  gene_syn ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4, ATRRP4, F15K9.4, F15K9_4  gene ATRRP4  go_component mitochondrion|GO:0005739||IEA  go_function RNA binding|GO:0003723||IEA  go_function exonuclease activity|GO:0004527||ISS  product ATRRP4 (ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4); RNA binding / exonuclease  note ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4 (ATRRP4); FUNCTIONS IN: RNA binding, exonuclease activity; LOCATED IN: mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), S1, RNA binding (InterPro:IPR003029); Has 443 Blast hits to 443 proteins in 204 species: Archae - 97; Bacteria - 0; Metazoa - 111; Fungi - 87; Plants - 23; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).  protein_id AT1G03360.1p  transcript_id AT1G03360.1  protein_id AT1G03360.1p  transcript_id AT1G03360.1  
At1g03370	chr1:000827182	0.0	W/827182-829182,829721-830187,830958-831313,831420-832640,832753-832935,833084-833367,833415-833570,833694-833956,834254-834419,834514-834996	AT1G03370.1  CDS  gene_syn F15K9.2, F15K9_2  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), GRAM (InterPro:IPR004182), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G03000.2); Has 36666 Blast hits to 23729 proteins in 1173 species: Archae - 306; Bacteria - 2687; Metazoa - 20823; Fungi - 2509; Plants - 2020; Viruses - 91; Other Eukaryotes - 8230 (source: NCBI BLink).  protein_id AT1G03370.1p  transcript_id AT1G03370.1  protein_id AT1G03370.1p  transcript_id AT1G03370.1  
At1g03380	chr1:000836155	0.0	W/836155-836328,836769-837233,837471-837908,838069-838314,838400-839227,839312-839469,839678-839805,839920-840362	AT1G03380.1  CDS  gene_syn ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 (ATG18) G, ATATG18G, F21B7.1  gene ATATG18G  go_process response to starvation|GO:0042594|15860012|IEP  go_function molecular_function|GO:0003674||ND  product AtATG18g  note AtATG18g; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to starvation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: AtATG18h (TAIR:AT1G54710.1); Has 249 Blast hits to 247 proteins in 69 species: Archae - 0; Bacteria - 0; Metazoa - 175; Fungi - 28; Plants - 35; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G03380.1p  transcript_id AT1G03380.1  protein_id AT1G03380.1p  transcript_id AT1G03380.1  
At1g03390	chr1:000841033	0.0	C/841033-842418	AT1G03390.1  CDS  gene_syn F21B7.2, F21B7_2  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT5G41040.2); Has 1310 Blast hits to 1295 proteins in 110 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 33; Plants - 1275; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G03390.1p  transcript_id AT1G03390.1  protein_id AT1G03390.1p  transcript_id AT1G03390.1  
At1g03400	chr1:000843677	0.0	C/843677-844158,843231-843552,842895-843146	AT1G03400.1  CDS  gene_syn F21B7.39, F21B7_39  function A single copy gene that encodes a protein with sequence similarity to tomato E8 (ACC oxidase, the last step in ethylene biosynthesis) involved in ethylene synthesis and fruit ripening in tomato. This gene is not induced by ethylene in siliques. The transcript is found in siliques, etiolated seedlings, leaves, stems and flowers.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function 1-aminocyclopropane-1-carboxylate oxidase activity|GO:0009815|7579161|ISS  product 2-oxoglutarate-dependent dioxygenase, putative  note 2-oxoglutarate-dependent dioxygenase, putative; FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate oxidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2A6; oxidoreductase (TAIR:AT1G03410.1); Has 5645 Blast hits to 5635 proteins in 687 species: Archae - 0; Bacteria - 718; Metazoa - 123; Fungi - 544; Plants - 3050; Viruses - 0; Other Eukaryotes - 1210 (source: NCBI BLink).  protein_id AT1G03400.1p  transcript_id AT1G03400.1  protein_id AT1G03400.1p  transcript_id AT1G03400.1  
At1g03410	chr1:000845952	0.0	C/845952-846574,845114-845435,844782-845033	AT1G03410.1  CDS  gene_syn 2A6, F21B7.3  gene 2A6  go_component endomembrane system|GO:0012505||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product 2A6; oxidoreductase  note 2A6; FUNCTIONS IN: oxidoreductase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase, putative (TAIR:AT1G03400.1); Has 5739 Blast hits to 5722 proteins in 684 species: Archae - 0; Bacteria - 723; Metazoa - 121; Fungi - 564; Plants - 3066; Viruses - 0; Other Eukaryotes - 1265 (source: NCBI BLink).  protein_id AT1G03410.1p  transcript_id AT1G03410.1  protein_id AT1G03410.1p  transcript_id AT1G03410.1  
At1g03420	chr1:000846664	0.0	W/846664-847739	AT1G03420.1  mRNA_TE_gene  pseudo  gene_syn F21B7.4, F21B7_4, SADHU NON-CODING RETROTRANSPOSON, Sadhu4-2  gene Sadhu4-2  function Member of Sadhu non-coding retrotransposon family  note Transposable element gene  
At1g03430	chr1:000848159	0.0	W/848159-848227,848367-848497,848642-848713,848808-848879,848998-849070,849179-849235	AT1G03430.1  CDS  gene_syn AHP5, F21B7.5, HISTIDINE-CONTAINING PHOSPHOTRANSFER FACTOR 5  gene AHP5  function Encodes AHP5, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).  go_component nucleus|GO:0005634|17122069|IDA  go_component cytoplasm|GO:0005737|17122069|IDA  go_process two-component signal transduction system (phosphorelay)|GO:0000160|11828030|TAS  go_process cytokinin mediated signaling|GO:0009736|17122069|IGI  go_process cytokinin mediated signaling|GO:0009736|17122069|IMP  go_function histidine phosphotransfer kinase activity|GO:0009927|10050311|IDA  go_function histidine phosphotransfer kinase activity|GO:0009927|11193423|ISS  go_function histidine phosphotransfer kinase activity|GO:0009927|17122069|ISS  go_function histidine phosphotransfer kinase activity|GO:0009927|9804162|IDA  product AHP5 (HISTIDINE-CONTAINING PHOSPHOTRANSFER FACTOR 5); histidine phosphotransfer kinase  note HISTIDINE-CONTAINING PHOSPHOTRANSFER FACTOR 5 (AHP5); FUNCTIONS IN: histidine phosphotransfer kinase activity; INVOLVED IN: cytokinin mediated signaling, two-component signal transduction system (phosphorelay); LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, phosphotransfer (Hpt) region (InterPro:IPR008207); BEST Arabidopsis thaliana protein match is: AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2); histidine phosphotransfer kinase/ protein binding / signal transducer (TAIR:AT3G29350.1); Has 170 Blast hits to 169 proteins in 32 species: Archae - 2; Bacteria - 20; Metazoa - 0; Fungi - 8; Plants - 138; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G03430.1p  transcript_id AT1G03430.1  protein_id AT1G03430.1p  transcript_id AT1G03430.1  
At1g03440	chr1:000852681	0.0	W/852681-853874	AT1G03440.1  CDS  gene_syn F21B7.6, F21B7_6  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT4G03010.1); Has 30989 Blast hits to 11581 proteins in 598 species: Archae - 15; Bacteria - 1130; Metazoa - 5265; Fungi - 242; Plants - 22372; Viruses - 0; Other Eukaryotes - 1965 (source: NCBI BLink).  protein_id AT1G03440.1p  transcript_id AT1G03440.1  protein_id AT1G03440.1p  transcript_id AT1G03440.1  
At1g03445	chr1:000859398	0.0	C/859398-859599,859232-859292,859001-859079,858777-858850,858599-858693,858120-858216,857971-858040,857704-857799,857547-857628,857279-857437,857013-857093,856759-856840,856540-856651,856370-856444,856056-856294,855859-855943,855688-855786,855405-855601,855255-855330,855031-855166,854803-854933,854653-854706	AT1G03445.1  CDS  gene_syn BRI1 SUPPRESSOR 1, BSU1, F21B7.7  gene BSU1  function encodes a serine threonine protein phosphatase with an N-terminal Kelch-repeat domain, which is nuclear localized and expressed preferentially in elongating cells. Genetic evidence suggest that this gene plays a redundant role (along with other members of the same gene family) in modulating growth in response to brassinosteroid.  go_component nucleus|GO:0005634|14977918|IDA  go_process brassinosteroid mediated signaling|GO:0009742|14977918|IGI  go_process regulation of protein localization|GO:0032880|17873094|IDA  go_function protein serine/threonine phosphatase activity|GO:0004722|14977918|IDA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product BSU1 (BRI1 SUPPRESSOR 1); protein serine/threonine phosphatase  note BRI1 SUPPRESSOR 1 (BSU1); FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: brassinosteroid mediated signaling, regulation of protein localization; LOCATED IN: nucleus; EXPRESSED IN: sperm cell, male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Metallophosphoesterase (InterPro:IPR004843), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Serine/threonine protein phosphatase, BSU1 (InterPro:IPR012391), Kelch-type beta propeller (InterPro:IPR015915), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: kelch repeat-containing serine/threonine phosphoesterase family protein (TAIR:AT4G03080.1); Has 9074 Blast hits to 7377 proteins in 465 species: Archae - 53; Bacteria - 346; Metazoa - 3602; Fungi - 1433; Plants - 1307; Viruses - 7; Other Eukaryotes - 2326 (source: NCBI BLink).  protein_id AT1G03445.1p  transcript_id AT1G03445.1  protein_id AT1G03445.1p  transcript_id AT1G03445.1  
At1g03457	chr1:000863860	0.0	C/863860-864019,863459-863541,862753-862804,862488-862613,862314-862393,862042-862212,861606-861909,861368-861511,861109-861278	AT1G03457.1  CDS  gene_syn F21B7.8  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA-binding protein, putative  note RNA-binding protein, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Ribonucleoprotein, BRUNO-like (InterPro:IPR015903), Paraneoplastic encephalomyelitis antigen (InterPro:IPR002343), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein, putative (TAIR:AT4G03110.1); Has 22287 Blast hits to 12792 proteins in 586 species: Archae - 14; Bacteria - 958; Metazoa - 13562; Fungi - 2206; Plants - 3077; Viruses - 0; Other Eukaryotes - 2470 (source: NCBI BLink).  protein_id AT1G03457.1p  transcript_id AT1G03457.1  protein_id AT1G03457.1p  transcript_id AT1G03457.1  
At1g03457	chr1:000863860	0.0	C/863860-864019,863459-863541,862753-862804,862488-862640,862314-862393,862042-862212,861606-861909,861368-861511,861109-861278	AT1G03457.2  CDS  gene_syn F21B7.8  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA-binding protein, putative  note RNA-binding protein, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Ribonucleoprotein, BRUNO-like (InterPro:IPR015903), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Paraneoplastic encephalomyelitis antigen (InterPro:IPR002343); BEST Arabidopsis thaliana protein match is: RNA-binding protein, putative (TAIR:AT4G03110.1); Has 21968 Blast hits to 12589 proteins in 581 species: Archae - 14; Bacteria - 954; Metazoa - 13308; Fungi - 2195; Plants - 3046; Viruses - 0; Other Eukaryotes - 2451 (source: NCBI BLink).  protein_id AT1G03457.2p  transcript_id AT1G03457.2  protein_id AT1G03457.2p  transcript_id AT1G03457.2  
At1g03470	chr1:000867409	0.0	C/867409-867493,866217-866941	AT1G03470.1  CDS  gene_syn F21B7.9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kinase interacting family protein  note kinase interacting family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: KIP1-like (InterPro:IPR011684); BEST Arabidopsis thaliana protein match is: kinase interacting family protein (TAIR:AT2G47920.1); Has 483 Blast hits to 464 proteins in 82 species: Archae - 6; Bacteria - 7; Metazoa - 113; Fungi - 35; Plants - 165; Viruses - 3; Other Eukaryotes - 154 (source: NCBI BLink).  protein_id AT1G03470.1p  transcript_id AT1G03470.1  protein_id AT1G03470.1p  transcript_id AT1G03470.1  
At1g03470	chr1:000867409	0.0	C/867409-867493,866217-866941	AT1G03470.2  CDS  gene_syn F21B7.9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kinase interacting family protein  note kinase interacting family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: KIP1-like (InterPro:IPR011684); BEST Arabidopsis thaliana protein match is: kinase interacting family protein (TAIR:AT2G47920.1); Has 483 Blast hits to 464 proteins in 82 species: Archae - 6; Bacteria - 7; Metazoa - 113; Fungi - 35; Plants - 165; Viruses - 3; Other Eukaryotes - 154 (source: NCBI BLink).  protein_id AT1G03470.2p  transcript_id AT1G03470.2  protein_id AT1G03470.2p  transcript_id AT1G03470.2  
At1g03475	chr1:000870651	0.0	C/870651-871175,870496-870571,870313-870407,870144-870227,869875-869962,869658-869782,869454-869552,869302-869370	AT1G03475.1  CDS  gene_syn ATCPO-I, COPROPORPHYRINOGEN III OXIDASE, CPO, F21B7.10, HEMF1, LESION INITIATION 2, LIN2  gene LIN2  function Encodes coproporphyrinogen III oxidase, a key enzyme in the biosynthetic pathway of chlorophyll and heme, a tetrapyrrole pathway. Mutants express cytological and molecular markers associated with the defense responses, usually activated by pathogen infection.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_component plastid|GO:0009536||IDA  go_process tetrapyrrole biosynthetic process|GO:0033014||IC  go_function coproporphyrinogen oxidase activity|GO:0004109||IGI  go_function coproporphyrinogen oxidase activity|GO:0004109||ISS  product LIN2 (LESION INITIATION 2); coproporphyrinogen oxidase  note LESION INITIATION 2 (LIN2); FUNCTIONS IN: coproporphyrinogen oxidase activity; INVOLVED IN: tetrapyrrole biosynthetic process; LOCATED IN: apoplast, chloroplast stroma, chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Coproporphyrinogen III oxidase (InterPro:IPR001260), Coproporphyrinogen III oxidase, conserved site (InterPro:IPR018375); BEST Arabidopsis thaliana protein match is: coproporphyrinogen III oxidase, putative / coproporphyrinogenase, putative / coprogen oxidase, putative (TAIR:AT4G03205.2); Has 3949 Blast hits to 3945 proteins in 816 species: Archae - 0; Bacteria - 1345; Metazoa - 96; Fungi - 104; Plants - 57; Viruses - 0; Other Eukaryotes - 2347 (source: NCBI BLink).  protein_id AT1G03475.1p  transcript_id AT1G03475.1  protein_id AT1G03475.1p  transcript_id AT1G03475.1  
At1g03490	chr1:000871874	0.0	W/871874-872212,872292-872393,872445-872682,872740-872906	AT1G03490.1  CDS  gene_syn ANAC006, Arabidopsis NAC domain containing protein 6, F21B7.11  gene ANAC006  go_process regulation of transcription|GO:0045449||IEA  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ANAC006 (Arabidopsis NAC domain containing protein 6); transcription factor  note Arabidopsis NAC domain containing protein 6 (ANAC006); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT1G19040.1); Has 1670 Blast hits to 1106 proteins in 103 species: Archae - 0; Bacteria - 24; Metazoa - 527; Fungi - 24; Plants - 556; Viruses - 101; Other Eukaryotes - 438 (source: NCBI BLink).  protein_id AT1G03490.1p  transcript_id AT1G03490.1  protein_id AT1G03490.1p  transcript_id AT1G03490.1  
At1g03495	chr1:000873436	0.0	W/873436-874832	AT1G03495.1  CDS  gene_syn F21B7.12  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase/ transferase, transferring acyl groups other than amino-acyl groups  note transferase/ transferase, transferring acyl groups other than amino-acyl groups; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT1G03940.1); Has 988 Blast hits to 979 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 13; Plants - 975; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G03495.1p  transcript_id AT1G03495.1  protein_id AT1G03495.1p  transcript_id AT1G03495.1  
At1g03502	chr1:000875358	0.0	C/875358-875471	AT1G03502.1  snoRNA  gene_syn 50828.SNORNA00002  function small nucleolar RNA  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT1G03502.1  
At1g03506	chr1:000875518	0.0	C/875518-875604	AT1G03506.1  snoRNA  gene_syn 50828.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT1G03506.1  
At1g03510	chr1:000876258	0.0	C/876258-877547	AT1G03510.1  CDS  gene_syn F21B7.13  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G20540.1); Has 12275 Blast hits to 4796 proteins in 128 species: Archae - 0; Bacteria - 28; Metazoa - 52; Fungi - 52; Plants - 11925; Viruses - 0; Other Eukaryotes - 218 (source: NCBI BLink).  protein_id AT1G03510.1p  transcript_id AT1G03510.1  protein_id AT1G03510.1p  transcript_id AT1G03510.1  
At1g03515	chr1:000877648	0.0	W/877648-877719	AT1G03515.1  tRNA  gene_syn 50828.TRNA-ASP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asp (anticodon: GTC)  transcript_id AT1G03515.1  
At1g03520	chr1:000878911	0.0	C/878911-879286,878735-878810,878540-878655,877948-878456	AT1G03520.2  CDS  gene_syn F21B7.14  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function acetylglucosaminyltransferase activity|GO:0008375||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein  note glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 14 (InterPro:IPR003406); BEST Arabidopsis thaliana protein match is: glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein (TAIR:AT4G03340.1); Has 691 Blast hits to 688 proteins in 86 species: Archae - 0; Bacteria - 14; Metazoa - 462; Fungi - 0; Plants - 190; Viruses - 14; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G03520.2p  transcript_id AT1G03520.2  protein_id AT1G03520.2p  transcript_id AT1G03520.2  
At1g03520	chr1:000878911	0.0	C/878911-879553,878735-878810,878540-878655,877948-878456	AT1G03520.1  CDS  gene_syn F21B7.14  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function acetylglucosaminyltransferase activity|GO:0008375||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein  note glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 14 (InterPro:IPR003406); BEST Arabidopsis thaliana protein match is: glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein (TAIR:AT4G03340.1); Has 691 Blast hits to 688 proteins in 86 species: Archae - 0; Bacteria - 14; Metazoa - 462; Fungi - 0; Plants - 190; Viruses - 14; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G03520.1p  transcript_id AT1G03520.1  protein_id AT1G03520.1p  transcript_id AT1G03520.1  
At1g03530	chr1:000882250	0.0	C/882250-883338,881978-882055,880638-881876	AT1G03530.1  CDS  gene_syn ATNAF1, F21B7.15, NAF1, NUCLEAR ASSEMBLY FACTOR 1  gene NAF1  go_process biological_process|GO:0008150||ND  product NAF1 (NUCLEAR ASSEMBLY FACTOR 1)  note NUCLEAR ASSEMBLY FACTOR 1 (NAF1); INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAF1 (InterPro:IPR008696); Has 52447 Blast hits to 27785 proteins in 1193 species: Archae - 268; Bacteria - 8558; Metazoa - 17671; Fungi - 7717; Plants - 3404; Viruses - 822; Other Eukaryotes - 14007 (source: NCBI BLink).  protein_id AT1G03530.1p  transcript_id AT1G03530.1  protein_id AT1G03530.1p  transcript_id AT1G03530.1  
At1g03540	chr1:000883782	0.0	W/883782-885611	AT1G03540.1  CDS  gene_syn F21B7.16  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G13600.1); Has 15175 Blast hits to 5044 proteins in 136 species: Archae - 0; Bacteria - 3; Metazoa - 61; Fungi - 63; Plants - 14719; Viruses - 0; Other Eukaryotes - 329 (source: NCBI BLink).  protein_id AT1G03540.1p  transcript_id AT1G03540.1  protein_id AT1G03540.1p  transcript_id AT1G03540.1  
At1g03550	chr1:000887725	0.0	C/887725-887778,887531-887635,887368-887430,887225-887258,887015-887137,886878-886940,886696-886789,886554-886599,886393-886460,886196-886244,886035-886100,885851-885937	AT1G03550.1  CDS  gene_syn F21B7.17, F21B7_17  go_component integral to membrane|GO:0016021||IEA  go_process protein transport|GO:0015031||IEA  go_function transmembrane transporter activity|GO:0022857||ISS  product secretory carrier membrane protein (SCAMP) family protein  note secretory carrier membrane protein (SCAMP) family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273); BEST Arabidopsis thaliana protein match is: secretory carrier membrane protein (SCAMP) family protein (TAIR:AT2G20840.1); Has 516 Blast hits to 516 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 336; Fungi - 12; Plants - 121; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G03550.1p  transcript_id AT1G03550.1  protein_id AT1G03550.1p  transcript_id AT1G03550.1  
At1g03560	chr1:000890428	0.0	C/890428-892410	AT1G03560.1  CDS  gene_syn F21B7.18  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: EMB2745 (EMBRYO DEFECTIVE 2745) (TAIR:AT5G39710.1); Has 22539 Blast hits to 6065 proteins in 191 species: Archae - 3; Bacteria - 41; Metazoa - 565; Fungi - 536; Plants - 20393; Viruses - 0; Other Eukaryotes - 1001 (source: NCBI BLink).  protein_id AT1G03560.1p  transcript_id AT1G03560.1  protein_id AT1G03560.1p  transcript_id AT1G03560.1  
At1g03570	chr1:000892514	0.0	W/892514-892585	AT1G03570.1  tRNA  gene_syn 50828.TRNA-GLN-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gln (anticodon: CTG)  transcript_id AT1G03570.1  
At1g03580	chr1:000892847	0.0	W/892847-894052	AT1G03580.1  pseudogenic_transcript  pseudo  note pseudogene, meprin and TRAF homology (MATH) domain protein -related, weak similarity to ubiquitin-specific protease 12 (Arabidopsis thaliana) GI:11993471; contains weak hit to Pfam PF00917: MATH domain  
At1g03590	chr1:000896015	0.0	C/896015-896257,895583-895921,895355-895472,895030-895253,894480-894944	AT1G03590.1  CDS  gene_syn F21B7.20  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product catalytic/ protein serine/threonine phosphatase  note catalytic/ protein serine/threonine phosphatase; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: catalytic/ protein serine/threonine phosphatase (TAIR:AT4G03415.1); Has 3866 Blast hits to 3864 proteins in 225 species: Archae - 0; Bacteria - 0; Metazoa - 1197; Fungi - 465; Plants - 1287; Viruses - 5; Other Eukaryotes - 912 (source: NCBI BLink).  protein_id AT1G03590.1p  transcript_id AT1G03590.1  protein_id AT1G03590.1p  transcript_id AT1G03590.1  
At1g03600	chr1:000898916	0.0	W/898916-899440	AT1G03600.1  CDS  gene_syn F21B7.21  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  go_component chloroplast photosystem II|GO:0030095||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product photosystem II family protein  note photosystem II family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 218 Blast hits to 218 proteins in 63 species: Archae - 0; Bacteria - 96; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT1G03600.1p  transcript_id AT1G03600.1  protein_id AT1G03600.1p  transcript_id AT1G03600.1  
At1g03610	chr1:000901304	0.0	W/901304-901396,901486-901706,901891-902077,902170-902347,902425-902672	AT1G03610.1  CDS  gene_syn F21B7.22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G03420.1); Has 147 Blast hits to 147 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G03610.1p  transcript_id AT1G03610.1  protein_id AT1G03610.1p  transcript_id AT1G03610.1  
At1g03620	chr1:000905943	0.0	C/905943-906013,905667-905784,905497-905565,905268-905383,905119-905173,904881-905004,904728-904775,904521-904615,904319-904420	AT1G03620.1  CDS  gene_syn F21B7.23  go_component cytoskeleton|GO:0005856||IEA  go_process phagocytosis|GO:0006909||IEA  go_function molecular_function|GO:0003674||ND  product phagocytosis and cell motility protein ELMO1-related  note phagocytosis and cell motility protein ELMO1-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: phagocytosis; LOCATED IN: cytoskeleton; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Engulfment and cell motility, ELMO (InterPro:IPR006816); BEST Arabidopsis thaliana protein match is: phagocytosis and cell motility protein ELMO1-related (TAIR:AT3G03610.1); Has 640 Blast hits to 640 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 428; Fungi - 27; Plants - 109; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT1G03620.1p  transcript_id AT1G03620.1  protein_id AT1G03620.1p  transcript_id AT1G03620.1  
At1g03630	chr1:000907699	0.0	W/907699-907755,907849-907947,908033-908570,908655-909010,909090-909245	AT1G03630.1  CDS  gene_syn F21B7.24, NADPH:PROTOCHLOROPHYLLIDE OXIDOREDUCTASE, POR C, PORC, PROTOCHLOROPHYLLIDE OXIDOREDUCTASE  gene POR C  function Encodes for a protein with protochlorophyllide oxidoreductase activity. The enzyme is NADPH- and light-dependent.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast|GO:0009507|8624514|NAS  go_process chlorophyll biosynthetic process|GO:0015995|10838072|TAS  go_function NADPH dehydrogenase activity|GO:0003959|11785941|IDA  go_function oxidoreductase activity|GO:0016491||ISS  go_function protochlorophyllide reductase activity|GO:0016630|11785941|IDA  product POR C (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE); NADPH dehydrogenase/ oxidoreductase/ protochlorophyllide reductase  note PROTOCHLOROPHYLLIDE OXIDOREDUCTASE (POR C); FUNCTIONS IN: oxidoreductase activity, NADPH dehydrogenase activity, protochlorophyllide reductase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Light-dependent protochlorophyllide reductase (InterPro:IPR005979), NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: PORA; oxidoreductase/ protochlorophyllide reductase (TAIR:AT5G54190.1); Has 14392 Blast hits to 14373 proteins in 1320 species: Archae - 117; Bacteria - 6826; Metazoa - 1625; Fungi - 1207; Plants - 577; Viruses - 0; Other Eukaryotes - 4040 (source: NCBI BLink).  protein_id AT1G03630.1p  transcript_id AT1G03630.1  protein_id AT1G03630.1p  transcript_id AT1G03630.1  
At1g03630	chr1:000907699	0.0	W/907699-907755,907849-907947,908039-908570,908655-909010,909090-909245	AT1G03630.2  CDS  gene_syn F21B7.24, NADPH:PROTOCHLOROPHYLLIDE OXIDOREDUCTASE, POR C, PORC, PROTOCHLOROPHYLLIDE OXIDOREDUCTASE  gene POR C  function Encodes for a protein with protochlorophyllide oxidoreductase activity. The enzyme is NADPH- and light-dependent.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|8624514|NAS  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process chlorophyll biosynthetic process|GO:0015995|10838072|TAS  go_function NADPH dehydrogenase activity|GO:0003959|11785941|IDA  go_function oxidoreductase activity|GO:0016491||ISS  go_function protochlorophyllide reductase activity|GO:0016630|11785941|IDA  product POR C (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE); NADPH dehydrogenase/ oxidoreductase/ protochlorophyllide reductase  note PROTOCHLOROPHYLLIDE OXIDOREDUCTASE (POR C); FUNCTIONS IN: oxidoreductase activity, NADPH dehydrogenase activity, protochlorophyllide reductase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Light-dependent protochlorophyllide reductase (InterPro:IPR005979), NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: PORA; oxidoreductase/ protochlorophyllide reductase (TAIR:AT5G54190.1); Has 14378 Blast hits to 14359 proteins in 1319 species: Archae - 117; Bacteria - 6816; Metazoa - 1625; Fungi - 1206; Plants - 575; Viruses - 0; Other Eukaryotes - 4039 (source: NCBI BLink).  protein_id AT1G03630.2p  transcript_id AT1G03630.2  protein_id AT1G03630.2p  transcript_id AT1G03630.2  
At1g03640	chr1:000909811	0.0	C/909811-909883	AT1G03640.1  tRNA  gene_syn 50828.TRNA-PHE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Phe (anticodon: GAA)  transcript_id AT1G03640.1  
At1g03650	chr1:000910860	0.0	C/910860-911103,910249-910481	AT1G03650.1  CDS  gene_syn F21B7.25  go_process metabolic process|GO:0008152||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product GCN5-related N-acetyltransferase (GNAT) family protein  note GCN5-related N-acetyltransferase (GNAT) family protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 1907 Blast hits to 1907 proteins in 687 species: Archae - 132; Bacteria - 1082; Metazoa - 181; Fungi - 133; Plants - 50; Viruses - 0; Other Eukaryotes - 329 (source: NCBI BLink).  protein_id AT1G03650.1p  transcript_id AT1G03650.1  protein_id AT1G03650.1p  transcript_id AT1G03650.1  
At1g03660	chr1:000911436	0.0	C/911436-911759	AT1G03660.1  CDS  gene_syn F21B7.26, F21B7_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT1G03670.1); Has 53 Blast hits to 53 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G03660.1p  transcript_id AT1G03660.1  protein_id AT1G03660.1p  transcript_id AT1G03660.1  
At1g03670	chr1:000915538	0.0	C/915538-916222,914909-915456,914222-914839	AT1G03670.1  CDS  gene_syn F21B7.27  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT4G03500.1); Has 31922 Blast hits to 13861 proteins in 487 species: Archae - 21; Bacteria - 1646; Metazoa - 17487; Fungi - 2073; Plants - 1702; Viruses - 203; Other Eukaryotes - 8790 (source: NCBI BLink).  protein_id AT1G03670.1p  transcript_id AT1G03670.1  protein_id AT1G03670.1p  transcript_id AT1G03670.1  
At1g03680	chr1:000917640	0.0	C/917640-917865,916990-917303	AT1G03680.1  CDS  gene_syn ABC TRANSPORTER OF THE MITOCHONDRION, ARABIDOPSIS THIOREDOXIN M-TYPE 1, ATHM1, ATM1, THIOREDOXIN M-TYPE 1, TRX-M1  gene ATHM1  function encodes a chloroplast thioredoxin similar to prokaryotic thioredoxins.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid|GO:0009534|19259774|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast stroma|GO:0009570|19259774|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_component stromule|GO:0010319|16923014|IDA  go_process response to oxidative stress|GO:0006979|11169189|IGI  go_process response to cold|GO:0009409|16923014|IEP  go_process positive regulation of catalytic activity|GO:0043085|11169189|IDA  go_function enzyme activator activity|GO:0008047|11169189|IDA  product ATHM1; enzyme activator  note ATHM1; FUNCTIONS IN: enzyme activator activity; INVOLVED IN: response to oxidative stress, response to cold, positive regulation of catalytic activity; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin (InterPro:IPR005746), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATHM2; enzyme activator (TAIR:AT4G03520.1); Has 14490 Blast hits to 13443 proteins in 1733 species: Archae - 183; Bacteria - 6149; Metazoa - 2544; Fungi - 764; Plants - 1140; Viruses - 4; Other Eukaryotes - 3706 (source: NCBI BLink).  protein_id AT1G03680.1p  transcript_id AT1G03680.1  protein_id AT1G03680.1p  transcript_id AT1G03680.1  
At1g03687	chr1:000918308	0.0	W/918308-918601,918868-919008,919096-919188,919267-919393,919503-919609,919737-919817,919913-919995,920087-920306	AT1G03687.1  CDS  gene_syn F21B7.29, F21B7_29  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: DTW (InterPro:IPR005636); Has 347 Blast hits to 347 proteins in 176 species: Archae - 0; Bacteria - 320; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G03687.1p  transcript_id AT1G03687.1  protein_id AT1G03687.1p  transcript_id AT1G03687.1  
At1g03687	chr1:000918308	0.0	W/918308-918601,918868-919008,919096-919188,919267-919393,919503-919609,919737-919817,919913-919999	AT1G03687.2  CDS  gene_syn F21B7.29, F21B7_29  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: DTW (InterPro:IPR005636); Has 280 Blast hits to 280 proteins in 148 species: Archae - 0; Bacteria - 258; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G03687.2p  transcript_id AT1G03687.2  protein_id AT1G03687.2p  transcript_id AT1G03687.2  
At1g03700	chr1:000921038	0.0	W/921038-921195,921299-921401,921611-921844	AT1G03700.1  CDS  gene_syn F21B7.30  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT4G03540.1); Has 260 Blast hits to 260 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 260; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G03700.1p  transcript_id AT1G03700.1  protein_id AT1G03700.1p  transcript_id AT1G03700.1  
At1g03710	chr1:000923492	0.0	W/923492-923755,923828-923977,924093-924287	AT1G03710.1  CDS  gene_syn F21B7.31  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17110.1); Has 51 Blast hits to 49 proteins in 5 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G03710.1p  transcript_id AT1G03710.1  protein_id AT1G03710.1p  transcript_id AT1G03710.1  
At1g03710	chr1:000923492	0.0	W/923492-923755,923828-923977,924093-924287	AT1G03710.2  CDS  gene_syn F21B7.31  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17110.1); Has 51 Blast hits to 49 proteins in 5 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G03710.2p  transcript_id AT1G03710.2  protein_id AT1G03710.2p  transcript_id AT1G03710.2  
At1g03720	chr1:000926160	0.0	C/926160-926373,925551-925780,925279-925446,924996-925208	AT1G03720.1  CDS  gene_syn F21B7.32  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_component cellular_component|GO:0005575||ND  product cathepsin-related  note cathepsin-related; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Peptidase C1A, papain C-terminal (InterPro:IPR000668); BEST Arabidopsis thaliana protein match is: cathepsin-related (TAIR:AT5G17080.1); Has 1745 Blast hits to 1745 proteins in 329 species: Archae - 2; Bacteria - 34; Metazoa - 852; Fungi - 0; Plants - 371; Viruses - 62; Other Eukaryotes - 424 (source: NCBI BLink).  protein_id AT1G03720.1p  transcript_id AT1G03720.1  protein_id AT1G03720.1p  transcript_id AT1G03720.1  
At1g03730	chr1:000931017	0.0	C/931017-931520	AT1G03730.1  CDS  gene_syn F21B7.33  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G03600.1); Has 27 Blast hits to 27 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G03730.1p  transcript_id AT1G03730.1  protein_id AT1G03730.1p  transcript_id AT1G03730.1  
At1g03740	chr1:000934055	0.0	W/934055-934708,934785-935069,935164-935481,935570-935797,935882-936097,936189-936572,936655-936792	AT1G03740.1  CDS  gene_syn F21B7.34  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note ATP binding / kinase/ protein kinase/ protein serine/threonine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G44290.4); Has 90393 Blast hits to 89297 proteins in 3132 species: Archae - 37; Bacteria - 7556; Metazoa - 39924; Fungi - 8378; Plants - 17428; Viruses - 409; Other Eukaryotes - 16661 (source: NCBI BLink).  protein_id AT1G03740.1p  transcript_id AT1G03740.1  protein_id AT1G03740.1p  transcript_id AT1G03740.1  
At1g03740	chr1:000934055	0.0	W/934055-934708,934785-935069,935164-935481,935570-935797,935882-936097,936189-936581	AT1G03740.2  CDS  gene_syn F21B7.34  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G44290.4); Has 90393 Blast hits to 89297 proteins in 3132 species: Archae - 37; Bacteria - 7556; Metazoa - 39924; Fungi - 8378; Plants - 17428; Viruses - 409; Other Eukaryotes - 16661 (source: NCBI BLink).  protein_id AT1G03740.2p  transcript_id AT1G03740.2  protein_id AT1G03740.2p  transcript_id AT1G03740.2  
At1g03743	chr1:000937207	0.0	C/937207-937287	AT1G03743.1  snoRNA  gene_syn 50828.SNORNA00003  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT1G03743.1  
At1g03746	chr1:000937401	0.0	C/937401-937485	AT1G03746.1  snoRNA  gene_syn 50728.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT1G03746.1  
At1g03750	chr1:000937920	0.0	W/937920-938309,938424-938530,938634-939800,939876-940002,940092-940367,940453-940678,940773-941068	AT1G03750.1  CDS  gene_syn CHR9, CHROMATIN REMODELING 9, F21M11.34, F21M11_34, SNF2, SUCROSE NON-FERMENTING 2, SWI2, SWITCH 2  gene SWI2  go_component membrane|GO:0016020|17432890|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function helicase activity|GO:0004386||ISS  product SWI2 (SWITCH 2); ATP binding / DNA binding / helicase/ nucleic acid binding  note SWITCH 2 (SWI2); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), SEC-C motif (InterPro:IPR004027), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54); ATP binding / DNA binding / helicase/ nucleic acid binding (TAIR:AT3G19210.1); Has 13589 Blast hits to 9821 proteins in 922 species: Archae - 71; Bacteria - 3060; Metazoa - 3624; Fungi - 2838; Plants - 971; Viruses - 151; Other Eukaryotes - 2874 (source: NCBI BLink).  protein_id AT1G03750.1p  transcript_id AT1G03750.1  protein_id AT1G03750.1p  transcript_id AT1G03750.1  
At1g03760	chr1:000943123	0.0	C/943123-943320,942980-943039,942653-942820,942187-942567,942031-942105,941915-941948,941694-941794,941537-941572,941366-941431,941211-941267	AT1G03760.1  CDS  gene_syn F21M11.33, F21M11_33  go_component prefoldin complex|GO:0016272||IEA  go_process protein folding|GO:0006457||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component prefoldin complex|GO:0016272||ISS  go_process protein folding|GO:0006457||ISS  product prefoldin subunit family protein  note prefoldin subunit family protein; FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding; LOCATED IN: prefoldin complex; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Prefoldin alpha-like (InterPro:IPR004127), Prefoldin (InterPro:IPR009053); Has 362 Blast hits to 355 proteins in 112 species: Archae - 19; Bacteria - 6; Metazoa - 196; Fungi - 10; Plants - 22; Viruses - 5; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT1G03760.1p  transcript_id AT1G03760.1  protein_id AT1G03760.1p  transcript_id AT1G03760.1  
At1g03770	chr1:000944772	0.0	W/944772-944982,945117-945168,945472-945530,945780-945861,945952-946072,946169-946210,946309-946812,946894-947001,947123-947293,947399-947431	AT1G03770.1  CDS  gene_syn ARABIDOPSIS THALIANA RING 1B, ATRING1B, F21M11.32, F21M11_32, RING 1B, RING1B  gene RING1B  function Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1a, a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression.  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634|19097900|IDA  go_component PRC1 complex|GO:0035102|19097900|IPI  go_process negative regulation of gene expression, epigenetic|GO:0045814|19097900|IGI  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product RING1B (RING 1B); protein binding / zinc ion binding  note RING 1B (RING1B); FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: negative regulation of gene expression, epigenetic; LOCATED IN: nucleus, PRC1 complex; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: RING1A (RING 1A); protein binding / zinc ion binding (TAIR:AT5G44280.1); Has 9167 Blast hits to 3918 proteins in 410 species: Archae - 10; Bacteria - 184; Metazoa - 6189; Fungi - 347; Plants - 323; Viruses - 323; Other Eukaryotes - 1791 (source: NCBI BLink).  protein_id AT1G03770.1p  transcript_id AT1G03770.1  protein_id AT1G03770.1p  transcript_id AT1G03770.1  
At1g03780	chr1:000951528	0.0	C/951528-951696,951126-951211,950881-951041,950582-950794,950404-950500,950198-950311,949883-950125,949541-949621,949297-949452,949076-949207,948697-948816,948429-948640,948064-948343	AT1G03780.1  CDS  gene_syn F21M11.31, F21M11_31, TARGETING PROTEIN FOR XKLP2, TPX2  gene TPX2  function Homolog of vertebrate TPX2. Protein has three domains involved in nuclear targeting, one in nuclear export and two in microtubule binding. Involved in mitotic spindle assembly during late prophase and early prometaphase.  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component nucleus|GO:0005634|18941054|IDA  go_process spindle assembly|GO:0051225|18941054|IMP  go_function microtubule binding|GO:0008017|18941054|IDA  product targeting protein-related  note TARGETING PROTEIN FOR XKLP2 (TPX2); FUNCTIONS IN: microtubule binding; INVOLVED IN: spindle assembly; LOCATED IN: nucleus, chloroplast envelope; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Targeting for Xklp2 (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22860.1); Has 767 Blast hits to 635 proteins in 103 species: Archae - 2; Bacteria - 27; Metazoa - 428; Fungi - 37; Plants - 70; Viruses - 0; Other Eukaryotes - 203 (source: NCBI BLink).  protein_id AT1G03780.1p  transcript_id AT1G03780.1  protein_id AT1G03780.1p  transcript_id AT1G03780.1  
At1g03780	chr1:000951528	0.0	C/951528-951696,951126-951211,950881-951041,950582-950794,950404-950500,950198-950311,949883-950125,949734-949796,949541-949621,949297-949452,949076-949207,948912-948992,948697-948816,948429-948595,948235-948343,948088-948147,947785-948009	AT1G03780.2  CDS  gene_syn F21M11.31, F21M11_31, TARGETING PROTEIN FOR XKLP2, TPX2  gene TPX2  function Homolog of vertebrate TPX2. Protein has three domains involved in nuclear targeting, one in nuclear export and two in microtubule binding. Involved in mitotic spindle assembly during late prophase and early prometaphase.  go_component nucleus|GO:0005634|18941054|IDA  go_process spindle assembly|GO:0051225|18941054|IMP  go_function microtubule binding|GO:0008017|18941054|IDA  product targeting protein-related  note TARGETING PROTEIN FOR XKLP2 (TPX2); FUNCTIONS IN: microtubule binding; INVOLVED IN: spindle assembly; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Targeting for Xklp2 (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22860.1); Has 1795 Blast hits to 1328 proteins in 174 species: Archae - 5; Bacteria - 77; Metazoa - 847; Fungi - 137; Plants - 212; Viruses - 0; Other Eukaryotes - 517 (source: NCBI BLink).  protein_id AT1G03780.2p  transcript_id AT1G03780.2  protein_id AT1G03780.2p  transcript_id AT1G03780.2  
At1g03790	chr1:000954589	0.0	W/954589-955770	AT1G03790.1  CDS  gene_syn F21M11.30, F21M11_30, SOM, SOMNUS  gene SOM  function Encodes SOMNUS (SOM), a nucleus-localized CCCH-type zinc finger protein. SOM negatively regulates light-dependent seed germination downstream of PIL5 (AT2G20180).  go_component nucleus|GO:0005634|18487351|IDA  go_process negative regulation of seed germination|GO:0010187|18487351|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product SOM (SOMNUS); nucleic acid binding / transcription factor  note SOMNUS (SOM); FUNCTIONS IN: transcription factor activity, nucleic acid binding; INVOLVED IN: negative regulation of seed germination, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein (TAIR:AT5G44260.1); Has 3000 Blast hits to 784 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 404; Fungi - 22; Plants - 222; Viruses - 2; Other Eukaryotes - 2350 (source: NCBI BLink).  protein_id AT1G03790.1p  transcript_id AT1G03790.1  protein_id AT1G03790.1p  transcript_id AT1G03790.1  
At1g03800	chr1:000957261	0.0	C/957261-957998	AT1G03800.1  CDS  gene_syn ARABIDOPSIS THALIANA RF DOMAIN PROTEIN 10, ATERF10, ERF DOMAIN PROTEIN 10, ERF10, F21M11.29, F21M11_29  gene ERF10  function encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-10). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.  go_process regulation of transcription, DNA-dependent|GO:0006355|11487705|TAS  go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS  go_function DNA binding|GO:0003677|11487705|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11487705|TAS  go_function transcription factor activity|GO:0003700|9687012|TAS  go_function transcription repressor activity|GO:0016564|11487705|TAS  product ERF10 (ERF DOMAIN PROTEIN 10); DNA binding / transcription factor/ transcription repressor  note ERF DOMAIN PROTEIN 10 (ERF10); FUNCTIONS IN: transcription repressor activity, transcription factor activity, DNA binding; INVOLVED IN: ethylene mediated signaling pathway, regulation of transcription, DNA-dependent; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ERF9 (ERF DOMAIN PROTEIN 9); DNA binding / transcription factor/ transcription repressor (TAIR:AT5G44210.1); Has 4036 Blast hits to 3747 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4028; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G03800.1p  transcript_id AT1G03800.1  protein_id AT1G03800.1p  transcript_id AT1G03800.1  
At1g03810	chr1:000958759	0.0	W/958759-959008,959428-959609	AT1G03810.1  CDS  gene_syn F21M11.28, F21M11_28  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DNA-binding protein-related  note DNA-binding protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340); BEST Arabidopsis thaliana protein match is: DNA-binding protein-related (TAIR:AT4G28440.1); Has 121 Blast hits to 121 proteins in 28 species: Archae - 12; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G03810.1p  transcript_id AT1G03810.1  protein_id AT1G03810.1p  transcript_id AT1G03810.1  
At1g03820	chr1:000960008	0.0	C/960008-960676	AT1G03820.1  CDS  gene_syn F21M11.27, F21M11_27  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 1356 Blast hits to 1124 proteins in 87 species: Archae - 0; Bacteria - 21; Metazoa - 28; Fungi - 30; Plants - 81; Viruses - 0; Other Eukaryotes - 1196 (source: NCBI BLink).  protein_id AT1G03820.1p  transcript_id AT1G03820.1  protein_id AT1G03820.1p  transcript_id AT1G03820.1  
At1g03830	chr1:000966446	0.0	C/966446-966622,965996-966157,965599-965736,965453-965506,965124-965309,964952-965041,964739-964873,964504-964626,964295-964380,963639-964191,963469-963546,962128-963321	AT1G03830.1  CDS  gene_syn F21M11.26, F21M11_26  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_component cellular_component|GO:0005575||ND  go_process immune response|GO:0006955||ISS  go_function GTPase activity|GO:0003924||ISS  go_function GTP binding|GO:0005525||ISS  product guanylate-binding family protein  note guanylate-binding family protein; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: immune response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Guanylate-binding protein-like, C-terminal (InterPro:IPR015900), Guanylate-binding protein, N-terminal (InterPro:IPR015894), Guanylate-binding protein, C-terminal (InterPro:IPR003191); BEST Arabidopsis thaliana protein match is: GTP binding / GTPase (TAIR:AT5G46070.1); Has 80855 Blast hits to 44175 proteins in 1894 species: Archae - 979; Bacteria - 10229; Metazoa - 40526; Fungi - 6109; Plants - 3316; Viruses - 380; Other Eukaryotes - 19316 (source: NCBI BLink).  protein_id AT1G03830.1p  transcript_id AT1G03830.1  protein_id AT1G03830.1p  transcript_id AT1G03830.1  
At1g03840	chr1:000969908	0.0	C/969908-970058,969315-969705,967596-968568	AT1G03840.2  CDS  gene_syn F21M11.25, F21M11_25, MGP, Magpie  gene MGP  function MGP is a nuclear-localized putative transcription factor with three zinc finger domains. MGP can interact with three proteins implicated in root patterning: SCR, SHR, and JKD in Y2H assays, and these interactions depend on the first zinc finger in MGP. MGP appears to be a direct transcriptional target of SHR and SCR, based on promoter binding assays, though it is not expressed in the QC, based on in situ hybridizations.  go_component nucleus|GO:0005634|17785527|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein binding|GO:0005515|17785527|IPI  go_function zinc ion binding|GO:0008270||ISS  product MGP (Magpie); nucleic acid binding / protein binding / transcription factor/ zinc ion binding  note Magpie (MGP); FUNCTIONS IN: protein binding, transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: NUC (nutcracker); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT5G44160.1); Has 42484 Blast hits to 16474 proteins in 313 species: Archae - 0; Bacteria - 0; Metazoa - 40730; Fungi - 160; Plants - 392; Viruses - 4; Other Eukaryotes - 1198 (source: NCBI BLink).  protein_id AT1G03840.2p  transcript_id AT1G03840.2  protein_id AT1G03840.2p  transcript_id AT1G03840.2  
At1g03840	chr1:000969908	0.0	C/969908-970058,969315-969711,967596-968568	AT1G03840.1  CDS  gene_syn F21M11.25, F21M11_25, MGP, Magpie  gene MGP  function MGP is a nuclear-localized putative transcription factor with three zinc finger domains. MGP can interact with three proteins implicated in root patterning: SCR, SHR, and JKD in Y2H assays, and these interactions depend on the first zinc finger in MGP. MGP appears to be a direct transcriptional target of SHR and SCR, based on promoter binding assays, though it is not expressed in the QC, based on in situ hybridizations.  go_component nucleus|GO:0005634|17785527|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein binding|GO:0005515|17785527|IPI  go_function zinc ion binding|GO:0008270||ISS  product MGP (Magpie); nucleic acid binding / protein binding / transcription factor/ zinc ion binding  note Magpie (MGP); FUNCTIONS IN: protein binding, transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: NUC (nutcracker); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT5G44160.1); Has 42319 Blast hits to 16428 proteins in 301 species: Archae - 0; Bacteria - 0; Metazoa - 40564; Fungi - 162; Plants - 395; Viruses - 4; Other Eukaryotes - 1194 (source: NCBI BLink).  protein_id AT1G03840.1p  transcript_id AT1G03840.1  protein_id AT1G03840.1p  transcript_id AT1G03840.1  
At1g03850	chr1:000977233	0.0	C/977233-977685	AT1G03850.2  CDS  gene_syn F21M11.22, F21M11_22  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  go_process response to cytokinin stimulus|GO:0009735|16212609|IEP  product glutaredoxin family protein  note glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: response to cytokinin stimulus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: GRX480; electron carrier/ protein disulfide oxidoreductase (TAIR:AT1G28480.1); Has 378 Blast hits to 378 proteins in 48 species: Archae - 0; Bacteria - 4; Metazoa - 28; Fungi - 14; Plants - 331; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G03850.2p  transcript_id AT1G03850.2  protein_id AT1G03850.2p  transcript_id AT1G03850.2  
At1g03850	chr1:000977280	0.0	C/977280-977685,976428-976501	AT1G03850.1  CDS  gene_syn F21M11.22, F21M11_22  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  go_process response to cytokinin stimulus|GO:0009735|16212609|IEP  product glutaredoxin family protein  note glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: response to cytokinin stimulus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: GRX480; electron carrier/ protein disulfide oxidoreductase (TAIR:AT1G28480.1); Has 255 Blast hits to 255 proteins in 23 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 5; Plants - 246; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G03850.1p  transcript_id AT1G03850.1  protein_id AT1G03850.1p  transcript_id AT1G03850.1  
At1g03860	chr1:000980778	0.0	C/980778-980870,980185-980355,979891-980103,979611-979799	AT1G03860.2  CDS  gene_syn ATPHB2, F21M11.21, F21M11_21, PROHIBITIN 2  gene ATPHB2  function prohibitin 2  go_component cell wall|GO:0005618|16287169|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component mitochondrion|GO:0005739|17883375|IDA  go_component plastid|GO:0009536|16618929|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process biological_process|GO:0008150||ND  product ATPHB2 (PROHIBITIN 2)  note PROHIBITIN 2 (ATPHB2); INVOLVED IN: biological_process unknown; LOCATED IN: in 6 components; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Prohibitin (InterPro:IPR000163), Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: ATPHB1 (PROHIBITIN 1) (TAIR:AT4G28510.1); Has 2516 Blast hits to 2515 proteins in 668 species: Archae - 99; Bacteria - 1074; Metazoa - 415; Fungi - 193; Plants - 142; Viruses - 7; Other Eukaryotes - 586 (source: NCBI BLink).  protein_id AT1G03860.2p  transcript_id AT1G03860.2  protein_id AT1G03860.2p  transcript_id AT1G03860.2  
At1g03860	chr1:000980987	0.0	C/980987-981157,980778-980894,980185-980355,979891-980103,979611-979799	AT1G03860.1  CDS  gene_syn ATPHB2, F21M11.21, F21M11_21, PROHIBITIN 2  gene ATPHB2  function prohibitin 2  go_component cell wall|GO:0005618|16287169|IDA  go_component mitochondrion|GO:0005739|15276431|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component mitochondrion|GO:0005739|17883375|IDA  go_component plastid|GO:0009536|16618929|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process biological_process|GO:0008150||ND  product ATPHB2 (PROHIBITIN 2)  note PROHIBITIN 2 (ATPHB2); INVOLVED IN: biological_process unknown; LOCATED IN: in 7 components; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Prohibitin (InterPro:IPR000163), Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: ATPHB1 (PROHIBITIN 1) (TAIR:AT4G28510.1); Has 2911 Blast hits to 2909 proteins in 772 species: Archae - 127; Bacteria - 1339; Metazoa - 429; Fungi - 193; Plants - 157; Viruses - 14; Other Eukaryotes - 652 (source: NCBI BLink).  protein_id AT1G03860.1p  transcript_id AT1G03860.1  protein_id AT1G03860.1p  transcript_id AT1G03860.1  
At1g03860	chr1:000980987	0.0	C/980987-981157,980778-980894,980185-980355,979891-980103,979611-979799	AT1G03860.3  CDS  gene_syn ATPHB2, F21M11.21, F21M11_21, PROHIBITIN 2  gene ATPHB2  function prohibitin 2  go_component cell wall|GO:0005618|16287169|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component mitochondrion|GO:0005739|17883375|IDA  go_component plastid|GO:0009536|16618929|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process biological_process|GO:0008150||ND  product ATPHB2 (PROHIBITIN 2)  note PROHIBITIN 2 (ATPHB2); INVOLVED IN: biological_process unknown; LOCATED IN: in 6 components; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Prohibitin (InterPro:IPR000163), Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: ATPHB1 (PROHIBITIN 1) (TAIR:AT4G28510.1); Has 2911 Blast hits to 2909 proteins in 772 species: Archae - 127; Bacteria - 1339; Metazoa - 429; Fungi - 193; Plants - 157; Viruses - 14; Other Eukaryotes - 652 (source: NCBI BLink).  protein_id AT1G03860.3p  transcript_id AT1G03860.3  protein_id AT1G03860.3p  transcript_id AT1G03860.3  
At1g03870	chr1:000982625	0.0	C/982625-983368	AT1G03870.1  CDS  gene_syn F21M11.20, F21M11_20, FASCICLIN-LIKE ARABINOOGALACTAN 9, FLA9  gene FLA9  function fasciclin-like arabinogalactan-protein 9 (Fla9)  go_component plasma membrane|GO:0005886|17644812|IDA  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  product FLA9 (FASCICLIN-LIKE ARABINOOGALACTAN 9)  note FASCICLIN-LIKE ARABINOOGALACTAN 9 (FLA9); LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FLA13 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13 PRECURSOR) (TAIR:AT5G44130.1); Has 676 Blast hits to 664 proteins in 130 species: Archae - 14; Bacteria - 201; Metazoa - 17; Fungi - 4; Plants - 405; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT1G03870.1p  transcript_id AT1G03870.1  protein_id AT1G03870.1p  transcript_id AT1G03870.1  
At1g03880	chr1:000985786	0.0	W/985786-986068,986279-986541,986854-987282,987524-987916	AT1G03880.1  CDS  gene_syn CRB, CRU2, CRUCIFERIN 2, CRUCIFERIN B, F21M11.19, F21M11_19  gene CRU2  function Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.  go_component endomembrane system|GO:0012505||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process response to abscisic acid stimulus|GO:0009737|18768909|IEP  go_process seed germination|GO:0009845||TAS  go_function nutrient reservoir activity|GO:0045735||ISS  product CRU2 (CRUCIFERIN 2); nutrient reservoir  note CRUCIFERIN 2 (CRU2); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: response to abscisic acid stimulus, seed germination; LOCATED IN: endomembrane system; EXPRESSED IN: leaf, seed; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), 11-S plant seed storage protein (InterPro:IPR006044); BEST Arabidopsis thaliana protein match is: CRA1 (CRUCIFERINA); nutrient reservoir (TAIR:AT5G44120.3); Has 688 Blast hits to 653 proteins in 109 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 683; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G03880.1p  transcript_id AT1G03880.1  protein_id AT1G03880.1p  transcript_id AT1G03880.1  
At1g03890	chr1:000989250	0.0	W/989250-989550,989653-989918,990049-990459,990531-990908	AT1G03890.1  CDS  gene_syn F21M11.18, F21M11_18  go_component endomembrane system|GO:0012505||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process biological_process|GO:0008150||ND  go_function nutrient reservoir activity|GO:0045735||ISS  product cupin family protein  note cupin family protein; FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf, seed; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), 11-S plant seed storage protein (InterPro:IPR006044); BEST Arabidopsis thaliana protein match is: CRA1 (CRUCIFERINA); nutrient reservoir (TAIR:AT5G44120.3); Has 691 Blast hits to 656 proteins in 126 species: Archae - 0; Bacteria - 61; Metazoa - 2; Fungi - 0; Plants - 627; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G03890.1p  transcript_id AT1G03890.1  protein_id AT1G03890.1p  transcript_id AT1G03890.1  
At1g03900	chr1:000991252	0.0	W/991252-991746,992443-992691,992778-992852	AT1G03900.1  CDS  gene_syn ATNAP4, Arabidopsis thaliana non-intrinsic ABC protein 4, F21M11.36  gene ATNAP4  function member of NAP family, an heterogeneous subfamily of the ATP-binding Cassette (ABC) superfamily of membrane transporters. The NAPs proteins are characterized by having only one nucleotide-binding folds (NBFs) domain.  go_component membrane|GO:0016020||IEA  go_process extracellular transport|GO:0006858|11346655|ISS  go_function transporter activity|GO:0005215||ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|11346655|ISS  product ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4); ATPase, coupled to transmembrane movement of substances / transporter  note Arabidopsis thaliana non-intrinsic ABC protein 4 (ATNAP4); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: extracellular transport; LOCATED IN: membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Adaptin ear-binding coat-associated protein 1 NECAP-1 (InterPro:IPR012466); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58600.1); Has 315 Blast hits to 315 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 178; Fungi - 35; Plants - 71; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT1G03900.1p  transcript_id AT1G03900.1  protein_id AT1G03900.1p  transcript_id AT1G03900.1  
At1g03905	chr1:000993478	0.0	W/993478-993631,994046-994206,994354-994405,994496-994632,994828-994914,995313-995594	AT1G03905.1  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATPase activity|GO:0016887||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  product ABC transporter family protein  note ABC transporter family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: POP1; transporter (TAIR:AT5G44110.1); Has 104361 Blast hits to 99730 proteins in 2063 species: Archae - 2221; Bacteria - 80319; Metazoa - 1669; Fungi - 992; Plants - 893; Viruses - 4; Other Eukaryotes - 18263 (source: NCBI BLink).  protein_id AT1G03905.1p  transcript_id AT1G03905.1  protein_id AT1G03905.1p  transcript_id AT1G03905.1  
At1g03910	chr1:000996432	0.0	W/996432-996734,996848-996939,997177-997276,997418-997489,997604-997666,997755-997895,998420-998515,998733-999017,999109-999411,999504-999680,999760-1000026,1000112-1000231	AT1G03910.1  CDS  gene_syn F21M11.16, F21M11_16  product unknown protein  note EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cactin, central region (InterPro:IPR018816); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36815.2); Has 11516 Blast hits to 6722 proteins in 356 species: Archae - 23; Bacteria - 259; Metazoa - 6122; Fungi - 1009; Plants - 493; Viruses - 33; Other Eukaryotes - 3577 (source: NCBI BLink).  protein_id AT1G03910.1p  transcript_id AT1G03910.1  protein_id AT1G03910.1p  transcript_id AT1G03910.1  
At1g03920	chr1:001001473	0.0	W/1001473-1001747,1001809-1002067,1002143-1002384,1002471-1002687,1002783-1002862,1002948-1003032,1003137-1003268,1003389-1003502,1003607-1003654,1003810-1003894,1003971-1004027,1004125-1004240	AT1G03920.1  CDS  gene_syn F21M11.15, F21M11_15  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase, C-terminal (InterPro:IPR017892), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: kinase (TAIR:AT2G20470.1); Has 79582 Blast hits to 78618 proteins in 2770 species: Archae - 61; Bacteria - 7465; Metazoa - 33348; Fungi - 7738; Plants - 14842; Viruses - 403; Other Eukaryotes - 15725 (source: NCBI BLink).  protein_id AT1G03920.1p  transcript_id AT1G03920.1  protein_id AT1G03920.1p  transcript_id AT1G03920.1  
At1g03930	chr1:001005439	0.0	W/1005439-1005514,1005612-1005652,1005746-1005815,1005926-1006074,1006176-1006271,1006428-1006498,1006581-1006642,1006734-1006797,1006917-1007001,1007081-1007207,1007290-1007375,1007459-1007525,1007602-1007732,1007828-1008118	AT1G03930.1  CDS  gene_syn ADK1, CASEIN KINASE I-LIKE 9 ALPHA, CASEIN KINASE I-LIKE 9 BETA, CKL9ALPHA, CKL9BETA, DUAL SPECIFICITY KINASE 1, F21M11.14, F21M11_14, dual specificity kinase 1  gene ADK1  function Phosphorylates serine, threonine, and tyrosine  go_component nucleus|GO:0005634|16126836|IDA  go_component cytoplasm|GO:0005737|16126836|IDA  go_process signal transduction|GO:0007165|7527390|TAS  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|7527390|IDA  go_function kinase activity|GO:0016301||ISS  product ADK1 (dual specificity kinase 1); kinase/ protein serine/threonine/tyrosine kinase  note dual specificity kinase 1 (ADK1); FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: signal transduction; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ckl7 (Casein Kinase I-like 7); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G44100.1); Has 50185 Blast hits to 43798 proteins in 1410 species: Archae - 11; Bacteria - 5418; Metazoa - 19913; Fungi - 4088; Plants - 6012; Viruses - 381; Other Eukaryotes - 14362 (source: NCBI BLink).  protein_id AT1G03930.1p  transcript_id AT1G03930.1  protein_id AT1G03930.1p  transcript_id AT1G03930.1  
At1g03935	chr1:001008810	0.0	W/1008810-1008896	AT1G03935.1  snoRNA  gene_syn 50728.SNORNA00002  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT1G03935.1  
At1g03940	chr1:001009542	0.0	C/1009542-1010951	AT1G03940.1  CDS  gene_syn F21M11.13, F21M11_13  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase/ transferase, transferring acyl groups other than amino-acyl groups (TAIR:AT1G03495.1); Has 963 Blast hits to 954 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 13; Plants - 950; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G03940.1p  transcript_id AT1G03940.1  protein_id AT1G03940.1p  transcript_id AT1G03940.1  
At1g03950	chr1:001013179	0.0	C/1013179-1013212,1012868-1012912,1012646-1012680,1012509-1012559,1012335-1012439,1012165-1012236,1011942-1012013,1011778-1011858,1011654-1011689,1011502-1011557,1011388-1011433	AT1G03950.1  CDS  gene_syn F21M11.12, F21M11_12, VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2.3, VPS2, VPS2.3  gene VPS2.3  go_component ESCRT III complex|GO:0000815|17090720|ISS  go_process vesicle-mediated transport|GO:0016192|16488176|ISS  product VPS2.3 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2.3)  note VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2.3 (VPS2.3); INVOLVED IN: vesicle-mediated transport; LOCATED IN: ESCRT III complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: VPS2.2 (TAIR:AT5G44560.1); Has 1238 Blast hits to 1237 proteins in 168 species: Archae - 0; Bacteria - 6; Metazoa - 605; Fungi - 223; Plants - 241; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).  protein_id AT1G03950.1p  transcript_id AT1G03950.1  protein_id AT1G03950.1p  transcript_id AT1G03950.1  
At1g03960	chr1:001014085	0.0	W/1014085-1014237,1014334-1014543,1014767-1014872,1014951-1015050,1015199-1015304,1015428-1015518,1015684-1015825,1016079-1016226,1016340-1016449,1016795-1016951,1017058-1017183,1017332-1017472	AT1G03960.1  CDS  gene_syn F21M11.11, F21M11_11  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein, putative / protein phosphatase 2A 62 kDa B   regulatory subunit, putative (TAIR:AT5G44090.1); Has 558 Blast hits to 555 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 328; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 153 (source: NCBI BLink).  protein_id AT1G03960.1p  transcript_id AT1G03960.1  protein_id AT1G03960.1p  transcript_id AT1G03960.1  
At1g03960	chr1:001014824	0.0	W/1014824-1014872,1014951-1015050,1015199-1015304,1015428-1015518,1015684-1015825,1016079-1016226,1016340-1016449,1016795-1016951,1017058-1017183,1017332-1017472	AT1G03960.2  CDS  gene_syn F21M11.11, F21M11_11  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein, putative / protein phosphatase 2A 62 kDa B   regulatory subunit, putative (TAIR:AT5G44090.1); Has 551 Blast hits to 551 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 325; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).  protein_id AT1G03960.2p  transcript_id AT1G03960.2  protein_id AT1G03960.2p  transcript_id AT1G03960.2  
At1g03970	chr1:001018237	0.0	W/1018237-1019049	AT1G03970.1  CDS  gene_syn F21M11.10, F21M11_10, G-BOX BINDING FACTOR 4, GBF4  gene GBF4  function encodes a basic leucine zipper G-box binding factor that can bind to G-box motifs only as heterodimers with GBF2 or GBF3. A single amino acid change can confer G-box binding as homodimers.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634|9193069|IDA  go_function DNA binding|GO:0003677|8146148|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function sequence-specific DNA binding|GO:0043565|8146148|IDA  product GBF4; DNA binding / sequence-specific DNA binding / transcription factor  note GBF4; FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT5G44080.1); Has 977 Blast hits to 977 proteins in 101 species: Archae - 0; Bacteria - 2; Metazoa - 338; Fungi - 8; Plants - 587; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT1G03970.1p  transcript_id AT1G03970.1  protein_id AT1G03970.1p  transcript_id AT1G03970.1  
At1g03980	chr1:001021800	0.0	C/1021800-1021871,1021287-1021443,1020982-1021220,1020655-1020818,1020513-1020564,1020187-1020414,1019906-1020092,1019604-1019779,1019311-1019394	AT1G03980.1  CDS  gene_syn ATPCS2, F21M11.9, F21M11_9, phytochelatin synthase 2  gene ATPCS2  function Encodes a protein with phytochelatin synthase activity which binds Cd2+ and Cd-glutathione complexes with high affinity. The protein has been postulated to be involved in Cd2+ tolerance. AtPCS2 expression appears to be less than that of AtPCS1, explaining the inability of endogenous AtPCS2 to substitute for AtPCS1 in the cad1-3 mutant (AtPCS1 null).  go_component cellular_component|GO:0005575||ND  go_process phytochelatin biosynthetic process|GO:0046938|11684101|IDA  go_process phytochelatin biosynthetic process|GO:0046938||ISS  go_function glutathione gamma-glutamylcysteinyltransferase activity|GO:0016756|11684101|IDA  go_function glutathione gamma-glutamylcysteinyltransferase activity|GO:0016756||ISS  product ATPCS2 (phytochelatin synthase 2); glutathione gamma-glutamylcysteinyltransferase  note phytochelatin synthase 2 (ATPCS2); FUNCTIONS IN: glutathione gamma-glutamylcysteinyltransferase activity; INVOLVED IN: phytochelatin biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Phytochelatin synthase, C-terminal (InterPro:IPR015407), Phytochelatin synthase (InterPro:IPR007719); BEST Arabidopsis thaliana protein match is: CAD1 (CADMIUM SENSITIVE 1); cadmium ion binding / copper ion binding / glutathione gamma-glutamylcysteinyltransferase (TAIR:AT5G44070.1); Has 232 Blast hits to 232 proteins in 107 species: Archae - 0; Bacteria - 105; Metazoa - 28; Fungi - 5; Plants - 76; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G03980.1p  transcript_id AT1G03980.1  protein_id AT1G03980.1p  transcript_id AT1G03980.1  
At1g03982	chr1:001023008	0.0	C/1023008-1023136,1022831-1022912,1022424-1022746	AT1G03982.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095); BEST Arabidopsis thaliana protein match is: RIC6 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 6) (TAIR:AT2G20430.1); Has 96 Blast hits to 96 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G03982.1p  transcript_id AT1G03982.1  protein_id AT1G03982.1p  transcript_id AT1G03982.1  
At1g03990	chr1:001024847	0.0	W/1024847-1025095,1025293-1025568,1025865-1027616	AT1G03990.1  CDS  gene_syn F21M11.7, F21M11_7  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on CH-OH group of donors|GO:0016614||IEA  go_function FAD binding|GO:0050660||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product alcohol oxidase-related  note alcohol oxidase-related; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, acting on CH-OH group of donors, oxidoreductase activity, FAD binding; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal (InterPro:IPR003953), Long-chain fatty alcohol dehydrogenase (InterPro:IPR012400); BEST Arabidopsis thaliana protein match is: alcohol oxidase-related (TAIR:AT4G28570.1); Has 2202 Blast hits to 2109 proteins in 514 species: Archae - 16; Bacteria - 1333; Metazoa - 16; Fungi - 113; Plants - 79; Viruses - 0; Other Eukaryotes - 645 (source: NCBI BLink).  protein_id AT1G03990.1p  transcript_id AT1G03990.1  protein_id AT1G03990.1p  transcript_id AT1G03990.1  
At1g04000	chr1:001028415	0.0	C/1028415-1028873	AT1G04000.1  CDS  gene_syn F21M11.6, F21M11_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44060.1); Has 36 Blast hits to 36 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G04000.1p  transcript_id AT1G04000.1  protein_id AT1G04000.1p  transcript_id AT1G04000.1  
At1g04010	chr1:001035886	0.0	C/1035886-1036128,1035383-1035518,1035140-1035284,1034886-1035055,1034702-1034778,1034122-1034338,1033876-1034029,1033438-1033537,1033187-1033281,1032808-1032859,1032582-1032653,1032244-1032412,1032059-1032163,1031901-1031985,1031703-1031784	AT1G04010.1  CDS  gene_syn F21M11.5, F21M11_5  go_component microsome|GO:0005792|16020547|IDA  go_process lipid metabolic process|GO:0006629||ISS  go_process sterol esterification|GO:0034434|16020547|IDA  go_process sterol esterification|GO:0034434|16020547|IMP  go_function phosphatidylcholine-sterol O-acyltransferase activity|GO:0004607|16020547|IDA  go_function phosphatidylcholine-sterol O-acyltransferase activity|GO:0004607||ISS  go_function phosphatidylethanolamine-sterol O-acyltransferase activity|GO:0080095|16020547|IDA  go_function phosphatidate-sterol O-acyltransferase activity|GO:0080096|16020547|IDA  product phosphatidate-sterol O-acyltransferase/ phosphatidylcholine-sterol O-acyltransferase/ phosphatidylethanolamine-sterol O-acyltransferase  note phosphatidate-sterol O-acyltransferase/ phosphatidylcholine-sterol O-acyltransferase/ phosphatidylethanolamine-sterol O-acyltransferase; FUNCTIONS IN: phosphatidylcholine-sterol O-acyltransferase activity, phosphatidylethanolamine-sterol O-acyltransferase activity, phosphatidate-sterol O-acyltransferase activity; INVOLVED IN: sterol esterification, lipid metabolic process; LOCATED IN: microsome; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Lecithin:cholesterol acyltransferase (InterPro:IPR003386); BEST Arabidopsis thaliana protein match is: ATPDAT; phosphatidylcholine-sterol O-acyltransferase (TAIR:AT5G13640.1); Has 448 Blast hits to 445 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 219; Fungi - 76; Plants - 80; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT1G04010.1p  transcript_id AT1G04010.1  protein_id AT1G04010.1p  transcript_id AT1G04010.1  
At1g04020	chr1:001036610	0.0	W/1036610-1036692,1036797-1036850,1036944-1037014,1037089-1037441,1037531-1037746,1037921-1038175,1038276-1038376,1038519-1038705,1038801-1038898,1038995-1039085,1039224-1039389,1039488-1039606,1039695-1040045	AT1G04020.1  CDS  gene_syn ATBARD1, BARD1, BREAST CANCER ASSOCIATED RING 1, F21M11.4, F21M11_4  gene BARD1  function Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains, which function in phosphorylation-dependent protein protein interactions.Loss of function mutations cause defects in meristem organization due to failure to repress WUS. BARD1 binds to WUS promoter and over expression of BARD reduces the extent of WUS expression.  go_component intracellular|GO:0005622||IEA  go_component intracellular|GO:0005622||ISS  go_process DNA repair|GO:0006281|16957774|IMP  go_process regulation of meristem organization|GO:0009934|18591352|IMP  go_process leaf development|GO:0048366|18591352|IMP  go_function DNA binding|GO:0003677|18591352|IDA  go_function transcription coactivator activity|GO:0003713||ISS  product BARD1 (BREAST CANCER ASSOCIATED RING 1); DNA binding / transcription coactivator  note BREAST CANCER ASSOCIATED RING 1 (BARD1); FUNCTIONS IN: transcription coactivator activity, DNA binding; INVOLVED IN: regulation of meristem organization, DNA repair, leaf development; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: ATBRCA1; ubiquitin-protein ligase (TAIR:AT4G21070.1); Has 4928 Blast hits to 4635 proteins in 247 species: Archae - 0; Bacteria - 10; Metazoa - 3954; Fungi - 264; Plants - 298; Viruses - 11; Other Eukaryotes - 391 (source: NCBI BLink).  protein_id AT1G04020.1p  transcript_id AT1G04020.1  protein_id AT1G04020.1p  transcript_id AT1G04020.1  
At1g04020	chr1:001036610	0.0	W/1036610-1036692,1036797-1036850,1036944-1037018,1037093-1037441,1037531-1037746,1037924-1038175,1038276-1038376,1038519-1038705,1038801-1038898,1038995-1039085,1039224-1039389,1039488-1039606,1039695-1040045	AT1G04020.2  CDS  gene_syn ATBARD1, BARD1, BREAST CANCER ASSOCIATED RING 1, F21M11.4, F21M11_4  gene BARD1  function Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains, which function in phosphorylation-dependent protein protein interactions.Loss of function mutations cause defects in meristem organization due to failure to repress WUS. BARD1 binds to WUS promoter and over expression of BARD reduces the extent of WUS expression.  go_component intracellular|GO:0005622||IEA  go_component intracellular|GO:0005622||ISS  go_process DNA repair|GO:0006281|16957774|IMP  go_process regulation of meristem organization|GO:0009934|18591352|IMP  go_process leaf development|GO:0048366|18591352|IMP  go_function DNA binding|GO:0003677|18591352|IDA  go_function transcription coactivator activity|GO:0003713||ISS  product BARD1 (BREAST CANCER ASSOCIATED RING 1); DNA binding / transcription coactivator  note BREAST CANCER ASSOCIATED RING 1 (BARD1); FUNCTIONS IN: transcription coactivator activity, DNA binding; INVOLVED IN: regulation of meristem organization, DNA repair, leaf development; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: ATBRCA1; ubiquitin-protein ligase (TAIR:AT4G21070.1); Has 5084 Blast hits to 4808 proteins in 251 species: Archae - 0; Bacteria - 39; Metazoa - 4093; Fungi - 261; Plants - 273; Viruses - 11; Other Eukaryotes - 407 (source: NCBI BLink).  protein_id AT1G04020.2p  transcript_id AT1G04020.2  protein_id AT1G04020.2p  transcript_id AT1G04020.2  
At1g04030	chr1:001040518	0.0	W/1040518-1040553,1040874-1040974,1041049-1042093,1042239-1042313	AT1G04030.1  CDS  gene_syn F21M11.3, F21M11_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44040.1); Has 1619 Blast hits to 1300 proteins in 197 species: Archae - 5; Bacteria - 140; Metazoa - 374; Fungi - 118; Plants - 115; Viruses - 23; Other Eukaryotes - 844 (source: NCBI BLink).  protein_id AT1G04030.1p  transcript_id AT1G04030.1  protein_id AT1G04030.1p  transcript_id AT1G04030.1  
At1g04040	chr1:001043392	0.0	C/1043392-1043819,1042954-1043163,1042564-1042741	AT1G04040.1  CDS  gene_syn F21M11.2, F21M11_2  go_component cell wall|GO:0005618|16287169|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_function acid phosphatase activity|GO:0003993||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process biological_process|GO:0008150||ND  go_function acid phosphatase activity|GO:0003993||ISS  product acid phosphatase class B family protein  note acid phosphatase class B family protein; FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519), Vegetative storage protein/acid phosphatase (InterPro:IPR014403), Acid phosphatase, plant (InterPro:IPR010028); BEST Arabidopsis thaliana protein match is: acid phosphatase class B family protein (TAIR:AT5G44020.1); Has 628 Blast hits to 624 proteins in 160 species: Archae - 0; Bacteria - 265; Metazoa - 2; Fungi - 0; Plants - 240; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).  protein_id AT1G04040.1p  transcript_id AT1G04040.1  protein_id AT1G04040.1p  transcript_id AT1G04040.1  
At1g04050	chr1:001049014	0.0	C/1049014-1049196,1048853-1048915,1048720-1048758,1048499-1048630,1048152-1048422,1046987-1048005,1046624-1046877,1046470-1046536,1046329-1046379,1046099-1046195,1045967-1045995	AT1G04050.1  CDS  gene_syn ARABIDOPSIS HOMOLOG OF SU(VAR)3-9 1, AT1G04060, F21M11.35, F21M11_35, SDG13, SET DOMAIN PROTEIN 13, SUVR1  gene SUVR1  function Encodes SUVR1, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins. Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity. SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain. Localized to the nucleolus, maybe involved in regulation of rRNA expression.  go_process chromatin modification|GO:0016568||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function histone-lysine N-methyltransferase activity|GO:0018024||IEA  go_component nucleolus|GO:0005730|17020925|IDA  product SUVR1 (ARABIDOPSIS HOMOLOG OF SU(VAR)3-9 1); histone-lysine N-methyltransferase/ zinc ion binding  note ARABIDOPSIS HOMOLOG OF SU(VAR)3-9 1 (SUVR1); FUNCTIONS IN: zinc ion binding, histone-lysine N-methyltransferase activity; INVOLVED IN: chromatin modification; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), WIYLD domain (InterPro:IPR018848), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Pre-SET zinc-binding region (InterPro:IPR007728); BEST Arabidopsis thaliana protein match is: SUVR2; histone-lysine N-methyltransferase/ zinc ion binding (TAIR:AT5G43990.4); Has 4225 Blast hits to 3835 proteins in 332 species: Archae - 0; Bacteria - 220; Metazoa - 2113; Fungi - 528; Plants - 493; Viruses - 9; Other Eukaryotes - 862 (source: NCBI BLink).  protein_id AT1G04050.1p  transcript_id AT1G04050.1  protein_id AT1G04050.1p  transcript_id AT1G04050.1  
At1g04070	chr1:001050832	0.0	C/1050832-1051116	AT1G04070.1  CDS  gene_syn ATTOM22-I, F20D22.15, TOM22, TOM22-I, TRANSLOCASE OF OUTER MEMBRANE 22-I  gene TOM22-I  function Subunit of the TOM complex, a translocase in the outer mitochondrial membrane that selectively allows proteins with a mitochondrial targeting sequence to enter the mitochondrion.  go_component mitochondrial outer membrane translocase complex|GO:0005742|10889230|ISS  go_process protein targeting to mitochondrion|GO:0006626|10889230|ISS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450|10889230|ISS  product TOM22-I (TRANSLOCASE OF OUTER MEMBRANE 22-I); P-P-bond-hydrolysis-driven protein transmembrane transporter  note TRANSLOCASE OF OUTER MEMBRANE 22-I (TOM22-I); FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein targeting to mitochondrion; LOCATED IN: mitochondrial outer membrane translocase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial import receptor, TOM9-2 subunit, plant (InterPro:IPR017411); BEST Arabidopsis thaliana protein match is: TOM22-V (TRANSLOCASE OF OUTER MEMBRANE 22-V); P-P-bond-hydrolysis-driven protein transmembrane transporter (TAIR:AT5G43970.1); Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G04070.1p  transcript_id AT1G04070.1  protein_id AT1G04070.1p  transcript_id AT1G04070.1  
At1g04080	chr1:001051803	0.0	W/1051803-1052037,1052160-1052269,1052546-1052775,1053327-1053494,1053807-1054200,1054663-1054806,1054936-1055088,1055174-1055290,1055478-1055708,1055798-1056103,1056187-1056288,1056434-1056550	AT1G04080.1  CDS  gene_syn F20D22.14, PRP39  gene PRP39  go_component intracellular|GO:0005622||IEA  go_function binding|GO:0005488||IEA  go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|16807317|IMP  product PRP39; binding  note PRP39; FUNCTIONS IN: binding; INVOLVED IN: regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: intracellular; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: PRP39-2 (TAIR:AT5G46400.1); Has 3312 Blast hits to 2661 proteins in 380 species: Archae - 0; Bacteria - 496; Metazoa - 1500; Fungi - 623; Plants - 264; Viruses - 71; Other Eukaryotes - 358 (source: NCBI BLink).  protein_id AT1G04080.1p  transcript_id AT1G04080.1  protein_id AT1G04080.1p  transcript_id AT1G04080.1  
At1g04080	chr1:001053171	0.0	W/1053171-1053187,1053327-1053494,1053807-1054200,1054663-1054806,1054936-1055088,1055174-1055290,1055478-1055708,1055798-1056103,1056187-1056288,1056434-1056550	AT1G04080.2  CDS  gene_syn F20D22.14, PRP39  gene PRP39  go_component intracellular|GO:0005622||IEA  go_function binding|GO:0005488||IEA  go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|16807317|IMP  product PRP39; binding  note PRP39; FUNCTIONS IN: binding; INVOLVED IN: regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: intracellular; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), RNA-processing protein, HAT helix (InterPro:IPR003107); BEST Arabidopsis thaliana protein match is: PRP39-2 (TAIR:AT5G46400.1).  protein_id AT1G04080.2p  transcript_id AT1G04080.2  protein_id AT1G04080.2p  transcript_id AT1G04080.2  
At1g04090	chr1:001057225	0.0	W/1057225-1057330,1057635-1059247	AT1G04090.1  CDS  gene_syn F20D22.17, F20D22_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946, plant (InterPro:IPR009291); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G43950.1); Has 205 Blast hits to 195 proteins in 56 species: Archae - 0; Bacteria - 14; Metazoa - 13; Fungi - 66; Plants - 107; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G04090.1p  transcript_id AT1G04090.1  protein_id AT1G04090.1p  transcript_id AT1G04090.1  
At1g04100	chr1:001059809	0.0	W/1059809-1060080,1060324-1060634,1060732-1060864,1060957-1061026	AT1G04100.1  CDS  gene_syn AUXIN-INDUCED PROTEIN 10, F20D22.13, F20D22_13, IAA10, INDOLEACETIC ACID-INDUCED PROTEIN 10  gene IAA10  function Auxin induced gene, IAA10 (IAA10).  go_component nucleus|GO:0005634||IEA  go_process response to auxin stimulus|GO:0009733|12036262|TAS  go_process response to chitin|GO:0010200|17722694|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  product IAA10; transcription factor  note IAA10; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to auxin stimulus, response to chitin; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA11 (INDOLE-3-ACETIC ACID INDUCIBLE 11); transcription factor (TAIR:AT4G28640.2); Has 879 Blast hits to 879 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 878; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G04100.1p  transcript_id AT1G04100.1  protein_id AT1G04100.1p  transcript_id AT1G04100.1  
At1g04110	chr1:001061457	0.0	C/1061457-1063784	AT1G04110.1  CDS  gene_syn F20D22.12, F20D22_12, SDD1, STOMATAL DENSITY AND DISTRIBUTION  gene SDD1  function Initially identified as a mutation affecting stomatal development and distribution. Encodes a protein similar to serine proteases.  go_component external side of plasma membrane|GO:0009897|12119372|IDA  go_process proteolysis|GO:0006508||ISS  go_process stomatal complex morphogenesis|GO:0010103|10809670|IMP  go_process regulation of cell proliferation|GO:0042127|10809670|IMP  go_function serine-type endopeptidase activity|GO:0004252|12119372|ISS  product SDD1 (STOMATAL DENSITY AND DISTRIBUTION); serine-type endopeptidase  note STOMATAL DENSITY AND DISTRIBUTION (SDD1); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: stomatal complex morphogenesis, proteolysis, regulation of cell proliferation; LOCATED IN: external side of plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT2G05920.1); Has 5219 Blast hits to 4504 proteins in 794 species: Archae - 177; Bacteria - 3003; Metazoa - 171; Fungi - 339; Plants - 876; Viruses - 0; Other Eukaryotes - 653 (source: NCBI BLink).  protein_id AT1G04110.1p  transcript_id AT1G04110.1  protein_id AT1G04110.1p  transcript_id AT1G04110.1  
At1g04120	chr1:001068357	0.0	C/1068357-1070396,1067927-1068247,1067763-1067849,1066852-1067550,1066607-1066771,1066231-1066525,1065935-1066149,1065550-1065855,1065380-1065443,1065055-1065294,1064848-1064960	AT1G04120.1  CDS  gene_syn ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 5, ATMRP5, MRP5, MULTIDRUG RESISTANCE PROTEIN 5  gene ATMRP5  function member of MRP subfamily  go_component plant-type vacuole|GO:0000325|16618929|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component vacuolar membrane|GO:0005774|16618929|IDA  go_process response to salt stress|GO:0009651|14684837|IMP  go_process cellular potassium ion homeostasis|GO:0030007|14684837|IMP  go_function sulfonylurea receptor activity|GO:0008281|14684837|IDA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|11346655|ISS  product ATMRP5; ATPase, coupled to transmembrane movement of substances / sulfonylurea receptor  note ATMRP5; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, sulfonylurea receptor activity; INVOLVED IN: response to salt stress, cellular potassium ion homeostasis; LOCATED IN: vacuolar membrane, plasma membrane, plant-type vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATMRP3; ATPase, coupled to transmembrane movement of substances / chlorophyll catabolite transporter/ glutathione S-conjugate-exporting ATPase (TAIR:AT3G13080.1); Has 406468 Blast hits to 214472 proteins in 2608 species: Archae - 7504; Bacteria - 289383; Metazoa - 10612; Fungi - 5093; Plants - 3290; Viruses - 21; Other Eukaryotes - 90565 (source: NCBI BLink).  protein_id AT1G04120.1p  transcript_id AT1G04120.1  protein_id AT1G04120.1p  transcript_id AT1G04120.1  
At1g04130	chr1:001073465	0.0	W/1073465-1073569,1073649-1073861,1073940-1074131,1074225-1074425,1074530-1074610,1074898-1075021,1075108-1075200,1075301-1075374	AT1G04130.1  CDS  gene_syn F20D22.10, F20D22_10  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product tetratricopeptide repeat (TPR)-containing protein  note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: serine/threonine protein phosphatase-related (TAIR:AT1G56440.1); Has 3930 Blast hits to 3426 proteins in 259 species: Archae - 8; Bacteria - 133; Metazoa - 1878; Fungi - 572; Plants - 573; Viruses - 0; Other Eukaryotes - 766 (source: NCBI BLink).  protein_id AT1G04130.1p  transcript_id AT1G04130.1  protein_id AT1G04130.1p  transcript_id AT1G04130.1  
At1g04140	chr1:001080233	0.0	C/1080233-1080321,1079621-1079779,1079410-1079526,1079246-1079330,1078838-1078946,1078682-1078749,1078427-1078552,1077341-1078353,1077036-1077236,1076872-1076932,1076566-1076679,1076311-1076424,1076119-1076225,1075992-1076010	AT1G04140.2  CDS  gene_syn F20D22.9, F20D22_9  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G43930.3); Has 18156 Blast hits to 8656 proteins in 356 species: Archae - 50; Bacteria - 4318; Metazoa - 6686; Fungi - 3683; Plants - 1054; Viruses - 0; Other Eukaryotes - 2365 (source: NCBI BLink).  protein_id AT1G04140.2p  transcript_id AT1G04140.2  protein_id AT1G04140.2p  transcript_id AT1G04140.2  
At1g04140	chr1:001080233	0.0	C/1080233-1080321,1079621-1079779,1079410-1079526,1079246-1079330,1078838-1078946,1078682-1078749,1078427-1078552,1077341-1078353,1077036-1077236,1076872-1076932,1076566-1076679,1076311-1076424,1076136-1076225,1075984-1076010	AT1G04140.1  CDS  gene_syn F20D22.9, F20D22_9  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G43930.3); Has 18206 Blast hits to 8655 proteins in 356 species: Archae - 50; Bacteria - 4336; Metazoa - 6723; Fungi - 3683; Plants - 1049; Viruses - 0; Other Eukaryotes - 2365 (source: NCBI BLink).  protein_id AT1G04140.1p  transcript_id AT1G04140.1  protein_id AT1G04140.1p  transcript_id AT1G04140.1  
At1g04150	chr1:001081208	0.0	C/1081208-1084246	AT1G04150.1  CDS  gene_syn F20D22.8, F20D22_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal, plant (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT5G12970.1); Has 2701 Blast hits to 2265 proteins in 163 species: Archae - 0; Bacteria - 2; Metazoa - 1863; Fungi - 64; Plants - 546; Viruses - 2; Other Eukaryotes - 224 (source: NCBI BLink).  protein_id AT1G04150.1p  transcript_id AT1G04150.1  protein_id AT1G04150.1p  transcript_id AT1G04150.1  
At1g04160	chr1:001086495	0.0	W/1086495-1086497,1087114-1087242,1087370-1087513,1087657-1087802,1087890-1088049,1088251-1088309,1088411-1088570,1088664-1088813,1088895-1089031,1089121-1089267,1089393-1089494,1089912-1089969,1090061-1090162,1090406-1090443,1090567-1090693,1090815-1090982,1091074-1091205,1091304-1091413,1091502-1091562,1091656-1091833,1091926-1092131,1092302-1092421,1092572-1092670,1092776-1092988,1093109-1093248,1093336-1093450,1093541-1093585,1093692-1093742,1093825-1093995,1094312-1094464,1094551-1094742,1094901-1095029,1095107-1095177,1095347-1095443,1095518-1095574,1095665-1095721,1095804-1095967,1096035-1096146	AT1G04160.1  CDS  gene_syn ARABIDOPSIS THALIANA MYOSIN XI B, ATXIB, F20D22.7, F20D22_7, MYOSIN XI B, MYOSIN XI-8, XI-8, XI-B, XIB  gene XIB  function Encodes a member of the type XI myosin protein family involved in root hair elongation.  go_component myosin complex|GO:0016459||IEA  go_process actin filament-based movement|GO:0030048|11516337|TAS  go_process root hair elongation|GO:0048767|19060218|IGI  go_function motor activity|GO:0003774|11516337|ISS  product XIB (MYOSIN XI B); motor  note MYOSIN XI B (XIB); FUNCTIONS IN: motor activity; INVOLVED IN: root hair elongation, actin filament-based movement; LOCATED IN: myosin complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor region (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: MYA2 (ARABIDOPSIS MYOSIN 2); GTP-dependent protein binding / Rab GTPase binding / motor (TAIR:AT5G43900.1); Has 21601 Blast hits to 14401 proteins in 991 species: Archae - 217; Bacteria - 1240; Metazoa - 13286; Fungi - 1245; Plants - 713; Viruses - 88; Other Eukaryotes - 4812 (source: NCBI BLink).  protein_id AT1G04160.1p  transcript_id AT1G04160.1  protein_id AT1G04160.1p  transcript_id AT1G04160.1  
At1g04170	chr1:001097423	0.0	W/1097423-1097531,1097619-1097680,1097800-1097912,1097999-1098101,1098379-1098606,1098718-1098936,1099037-1099297,1099400-1099702	AT1G04170.1  CDS  gene_syn EIF2 GAMMA, EUKARYOTIC TRANSLATION INITIATION FACTOR 2 GAMMA SUBUNIT, F20D22.6, F20D22_6  gene EIF2 GAMMA  function protein synthesis initiation factor eIF2 gamma  go_function translation initiation factor activity|GO:0003743||ISS  go_function translation factor activity, nucleic acid binding|GO:0008135||ISS  product EIF2 GAMMA; translation factor, nucleic acid binding / translation initiation factor  note EIF2 GAMMA; FUNCTIONS IN: translation factor activity, nucleic acid binding, translation initiation factor activity; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Initiation factor eIF2 gamma, C-terminal (InterPro:IPR015256), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 2 subunit 3, putative / eIF2S3, putative / eIF-2-gamma, putative (TAIR:AT4G18330.2); Has 20108 Blast hits to 20075 proteins in 4607 species: Archae - 440; Bacteria - 10098; Metazoa - 3659; Fungi - 379; Plants - 626; Viruses - 0; Other Eukaryotes - 4906 (source: NCBI BLink).  protein_id AT1G04170.1p  transcript_id AT1G04170.1  protein_id AT1G04170.1p  transcript_id AT1G04170.1  
At1g04171	chr1:001100444	0.0	C/1100444-1100608	AT1G04171.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G04171.1p  transcript_id AT1G04171.1  protein_id AT1G04171.1p  transcript_id AT1G04171.1  
At1g04180	chr1:001104623	0.0	W/1104623-1105288,1105389-1105988	AT1G04180.1  CDS  gene_syn F20D22.5, F20D22_5  go_function flavin-containing monooxygenase activity|GO:0004499||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_function monooxygenase activity|GO:0004497||ISS  product flavin-containing monooxygenase family protein / FMO family protein  note flavin-containing monooxygenase family protein / FMO family protein; FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960), Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027); BEST Arabidopsis thaliana protein match is: YUCCA5; monooxygenase (TAIR:AT5G43890.1); Has 7796 Blast hits to 7785 proteins in 1030 species: Archae - 8; Bacteria - 3977; Metazoa - 680; Fungi - 943; Plants - 361; Viruses - 0; Other Eukaryotes - 1827 (source: NCBI BLink).  protein_id AT1G04180.1p  transcript_id AT1G04180.1  protein_id AT1G04180.1p  transcript_id AT1G04180.1  
At1g04190	chr1:001108400	0.0	C/1108400-1108557,1107985-1108078,1107820-1107870,1107556-1107729,1107268-1107447,1107070-1107189,1106857-1106990,1106617-1106692	AT1G04190.1  CDS  gene_syn F20D22.4, F20D22_4  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product tetratricopeptide repeat (TPR)-containing protein  note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT1G62740.1); Has 15524 Blast hits to 9686 proteins in 698 species: Archae - 779; Bacteria - 4552; Metazoa - 3572; Fungi - 847; Plants - 951; Viruses - 0; Other Eukaryotes - 4823 (source: NCBI BLink).  protein_id AT1G04190.1p  transcript_id AT1G04190.1  protein_id AT1G04190.1p  transcript_id AT1G04190.1  
At1g04200	chr1:001109676	0.0	W/1109676-1109865,1109984-1110223,1110300-1110363,1110457-1110586,1110678-1110819,1110983-1111228,1111305-1111392,1111523-1111625,1111791-1111919,1112001-1112114,1112291-1112409,1112500-1112590,1112689-1112781,1112861-1112950,1113072-1113191,1113301-1113392,1113507-1113564,1113786-1113875	AT1G04200.1  CDS  gene_syn F20D22.3, F20D22_3  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 296 Blast hits to 293 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 238; Fungi - 12; Plants - 16; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G04200.1p  transcript_id AT1G04200.1  protein_id AT1G04200.1p  transcript_id AT1G04200.1  
At1g04210	chr1:001114696	0.0	W/1114696-1115192,1115557-1115821,1115938-1116100,1116226-1116961,1117053-1117482,1117575-1117756,1117989-1118145,1118223-1118447,1118531-1118881,1118968-1119069,1119153-1119383	AT1G04210.1  CDS  gene_syn F20D22.2, F20D22_2  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function protein kinase activity|GO:0004672||ISS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein / protein kinase family protein  note leucine-rich repeat family protein / protein kinase family protein; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: MEKK1 (MAP KINASE KINASE KINASE 1); DNA binding / MAP kinase kinase kinase/ kinase/ kinase binding / protein binding (TAIR:AT4G08500.1); Has 93749 Blast hits to 76874 proteins in 1795 species: Archae - 79; Bacteria - 8196; Metazoa - 43368; Fungi - 6667; Plants - 20883; Viruses - 341; Other Eukaryotes - 14215 (source: NCBI BLink).  protein_id AT1G04210.1p  transcript_id AT1G04210.1  protein_id AT1G04210.1p  transcript_id AT1G04210.1  
At1g04220	chr1:001121716	0.0	C/1121716-1122483,1119853-1120671	AT1G04220.1  CDS  gene_syn 3-KETOACYL-COA SYNTHASE 2, F20D22.1, F20D22_1, KCS2  gene KCS2  function Encodes KCS2, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).  go_component membrane|GO:0016020||IEA  go_process response to osmotic stress|GO:0006970|18786002|IEP  go_process response to wounding|GO:0009611|18786002|IEP  go_process suberin biosynthetic process|GO:0010345|18786002|IMP  go_function fatty acid elongase activity|GO:0009922|15277688|IDA  product KCS2 (3-KETOACYL-COA SYNTHASE 2); fatty acid elongase  note 3-KETOACYL-COA SYNTHASE 2 (KCS2); FUNCTIONS IN: fatty acid elongase activity; INVOLVED IN: response to wounding, response to osmotic stress, suberin biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038), Chalcone and stilbene synthases, C-terminal (InterPro:IPR012328); BEST Arabidopsis thaliana protein match is: KCS20 (3-KETOACYL-COA SYNTHASE 20); fatty acid elongase (TAIR:AT5G43760.1); Has 3471 Blast hits to 3463 proteins in 932 species: Archae - 0; Bacteria - 1380; Metazoa - 0; Fungi - 4; Plants - 1937; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).  protein_id AT1G04220.1p  transcript_id AT1G04220.1  protein_id AT1G04220.1p  transcript_id AT1G04220.1  
At1g04230	chr1:001125576	0.0	W/1125576-1125728,1125995-1126124,1126233-1126363,1126535-1126673,1126848-1126962,1127193-1127256,1127434-1127673,1127823-1127828	AT1G04230.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G43720.1); Has 1140 Blast hits to 725 proteins in 146 species: Archae - 0; Bacteria - 18; Metazoa - 635; Fungi - 256; Plants - 52; Viruses - 5; Other Eukaryotes - 174 (source: NCBI BLink).  protein_id AT1G04230.1p  transcript_id AT1G04230.1  protein_id AT1G04230.1p  transcript_id AT1G04230.1  
At1g04240	chr1:001129135	0.0	C/1129135-1129319,1128744-1129052,1128564-1128639	AT1G04240.1  CDS  gene_syn F19P19.32, F19P19_32, IAA3, INDOLE-3-ACETIC ACID 3, SHORT HYPOCOTYL 2, SHY2  gene SHY2  function SHY2/IAA3 regulates multiple auxin responses in roots. It is induced rapidly by IAA, and has been shown to be phosphorylated by oat phytochrome A in vitro.  go_component nucleus|GO:0005634||IEA  go_process response to auxin stimulus|GO:0009733|11884676|IMP  go_process response to brassinosteroid stimulus|GO:0009741|16367964|TAS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  product SHY2 (SHORT HYPOCOTYL 2); transcription factor  note SHORT HYPOCOTYL 2 (SHY2); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to cyclopentenone, response to auxin stimulus, response to brassinosteroid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: ATAUX2-11 (AUXIN INDUCIBLE 2-11); DNA binding / transcription factor (TAIR:AT5G43700.1); Has 1102 Blast hits to 1101 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1101; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G04240.1p  transcript_id AT1G04240.1  protein_id AT1G04240.1p  transcript_id AT1G04240.1  
At1g04250	chr1:001136382	0.0	W/1136382-1136620,1136934-1137145,1137460-1137598,1137740-1137801,1138303-1138340	AT1G04250.1  CDS  gene_syn AUXIN RESISTANT 3, AXR3, F19P19.31, F19P19_31, IAA17, INDOLE ACETIC ACID 17  gene AXR3  function Transcription regulator acting as repressor of auxin-inducible gene expression. Auxin-inducible AUX/IAA gene. Short-lived nuclear protein with four conserved domains. Domain III has homology to beta alpha alpha dimerization and DNA binding domains. Involved in auxin signaling. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components.  go_component proteasome complex|GO:0000502|15994909|IDA  go_component nucleus|GO:0005634|15994909|IDA  go_component signalosome|GO:0008180|15994909|IDA  go_component SCF ubiquitin ligase complex|GO:0019005|15994909|IDA  go_process response to auxin stimulus|GO:0009733|12036262|TAS  go_process response to auxin stimulus|GO:0009733|17919906|IEP  go_process response to auxin stimulus|GO:0009733|9478901|IMP  go_process auxin mediated signaling pathway|GO:0009734|11283339|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||NAS  product AXR3 (AUXIN RESISTANT 3); transcription factor  note AUXIN RESISTANT 3 (AXR3); FUNCTIONS IN: transcription factor activity; INVOLVED IN: auxin mediated signaling pathway, response to auxin stimulus; LOCATED IN: proteasome complex, signalosome, SCF ubiquitin ligase complex, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14); protein binding / transcription factor/ transcription repressor (TAIR:AT4G14550.1); Has 1100 Blast hits to 1100 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1099; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G04250.1p  transcript_id AT1G04250.1  protein_id AT1G04250.1p  transcript_id AT1G04250.1  
At1g04260	chr1:001140749	0.0	C/1140749-1141297	AT1G04260.1  CDS  gene_syn CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7, F19P19.30, F19P19_30, MPI7, MPIP7, PRA1.D, PRENYLATED RAB ACCEPTOR 1.D  gene MPI7  function Encodes protein that interacts with CaMV movement protein. Colocalizes in the cytoplasm with the movement protein. Has similarity to mammalian proteins (such as the rat PRA1) which have been described as rab acceptors.  go_component cytoplasm|GO:0005737|11725951|IDA  go_component endoplasmic reticulum|GO:0005783|18583532|IDA  go_process vesicle-mediated transport|GO:0016192|18583532|IDA  go_process spread of virus within host|GO:0046739|11725951|TAS  go_function protein binding|GO:0005515|11725951|IPI  product MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7); protein binding  note CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7 (MPI7); FUNCTIONS IN: protein binding; INVOLVED IN: vesicle-mediated transport, spread of virus within host; LOCATED IN: endoplasmic reticulum, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: PRA1.E (PRENYLATED RAB ACCEPTOR 1.E) (TAIR:AT1G08770.1); Has 409 Blast hits to 409 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 107; Fungi - 52; Plants - 217; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT1G04260.1p  transcript_id AT1G04260.1  protein_id AT1G04260.1p  transcript_id AT1G04260.1  
At1g04270	chr1:001142958	0.0	C/1142958-1142960,1142721-1142869,1142576-1142633,1141852-1142100	AT1G04270.1  CDS  gene_syn CYTOSOLIC RIBOSOMAL PROTEIN S15, F19P19.29, F19P19_29, RIBOSOMAL PROTEIN S15, RPS15  gene RPS15  function Encodes cytosolic ribosomal protein S15.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product RPS15 (CYTOSOLIC RIBOSOMAL PROTEIN S15); structural constituent of ribosome  note CYTOSOLIC RIBOSOMAL PROTEIN S15 (RPS15); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S15, eukaryotic/archaeal (InterPro:IPR005713), Ribosomal protein S19/S15 (InterPro:IPR002222); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S15 (RPS15D) (TAIR:AT5G09510.1); Has 5180 Blast hits to 5180 proteins in 1501 species: Archae - 179; Bacteria - 2245; Metazoa - 207; Fungi - 151; Plants - 555; Viruses - 0; Other Eukaryotes - 1843 (source: NCBI BLink).  protein_id AT1G04270.1p  transcript_id AT1G04270.1  protein_id AT1G04270.1p  transcript_id AT1G04270.1  
At1g04270	chr1:001142958	0.0	C/1142958-1142960,1142721-1142869,1142579-1142633,1141852-1142100	AT1G04270.2  CDS  gene_syn CYTOSOLIC RIBOSOMAL PROTEIN S15, F19P19.29, F19P19_29, RIBOSOMAL PROTEIN S15, RPS15  gene RPS15  function Encodes cytosolic ribosomal protein S15.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product RPS15 (CYTOSOLIC RIBOSOMAL PROTEIN S15); structural constituent of ribosome  note CYTOSOLIC RIBOSOMAL PROTEIN S15 (RPS15); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S15, eukaryotic/archaeal (InterPro:IPR005713), Ribosomal protein S19/S15 (InterPro:IPR002222); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S15 (RPS15D) (TAIR:AT5G09510.1); Has 5435 Blast hits to 5435 proteins in 1600 species: Archae - 179; Bacteria - 2449; Metazoa - 207; Fungi - 153; Plants - 562; Viruses - 0; Other Eukaryotes - 1885 (source: NCBI BLink).  protein_id AT1G04270.2p  transcript_id AT1G04270.2  protein_id AT1G04270.2p  transcript_id AT1G04270.2  
At1g04280	chr1:001146523	0.0	C/1146523-1146541,1146141-1146374,1145497-1145720,1145295-1145359,1144876-1145094,1144655-1144784,1144234-1144556,1143980-1144124,1143643-1143888	AT1G04280.1  CDS  gene_syn F19P19.28, F19P19_28  go_component membrane|GO:0016020|17432890|IDA  product unknown protein  note unknown protein; LOCATED IN: membrane; EXPRESSED IN: leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06750.1); Has 135 Blast hits to 135 proteins in 32 species: Archae - 0; Bacteria - 26; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G04280.1p  transcript_id AT1G04280.1  protein_id AT1G04280.1p  transcript_id AT1G04280.1  
At1g04295	chr1:001147781	0.0	W/1147781-1148435	AT1G04295.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G04290  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G04295.1  
At1g04290	chr1:001148173	0.0	C/1148173-1148352,1147948-1148091,1147721-1147864	AT1G04290.1  CDS  gene_syn F19P19.27, F19P19_27  go_component peroxisome|GO:0005777|17951448|IDA  go_process biological_process|GO:0008150||ND  go_function acyl-CoA thioesterase activity|GO:0016291||ISS  go_function hydrolase activity, acting on ester bonds|GO:0016788||ISS  product thioesterase family protein  note thioesterase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioesterase superfamily (InterPro:IPR006683), Phenylacetic acid degradation-related protein (InterPro:IPR003736); BEST Arabidopsis thaliana protein match is: thioesterase family protein (TAIR:AT2G29590.1); Has 654 Blast hits to 653 proteins in 190 species: Archae - 15; Bacteria - 172; Metazoa - 161; Fungi - 107; Plants - 138; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT1G04290.1p  transcript_id AT1G04290.1  protein_id AT1G04290.1p  transcript_id AT1G04290.1  
At1g04300	chr1:001152879	0.0	C/1152879-1153095,1152677-1152809,1152317-1152475,1151503-1151851,1151212-1151324,1150968-1151118,1150392-1150882,1150118-1150319,1148818-1149996	AT1G04300.2  CDS  gene_syn F19P19.26, F19P19_26  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT5G43560.2); Has 15192 Blast hits to 9607 proteins in 677 species: Archae - 16; Bacteria - 1260; Metazoa - 5600; Fungi - 1932; Plants - 456; Viruses - 109; Other Eukaryotes - 5819 (source: NCBI BLink).  protein_id AT1G04300.2p  transcript_id AT1G04300.2  protein_id AT1G04300.2p  transcript_id AT1G04300.2  
At1g04300	chr1:001153718	0.0	C/1153718-1153895,1153234-1153345,1153036-1153124,1152879-1152947,1152677-1152809,1152317-1152475,1151503-1151851,1151212-1151324,1150968-1151118,1150392-1150882,1150118-1150319,1148818-1149996	AT1G04300.1  CDS  gene_syn F19P19.26, F19P19_26  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT5G43560.2); Has 15585 Blast hits to 9972 proteins in 679 species: Archae - 16; Bacteria - 1260; Metazoa - 5683; Fungi - 2012; Plants - 671; Viruses - 109; Other Eukaryotes - 5834 (source: NCBI BLink).  protein_id AT1G04300.1p  transcript_id AT1G04300.1  protein_id AT1G04300.1p  transcript_id AT1G04300.1  
At1g04300	chr1:001153718	0.0	C/1153718-1153895,1153234-1153345,1153036-1153124,1152879-1152971,1152677-1152809,1152317-1152475,1151503-1151851,1151212-1151324,1150968-1151118,1150392-1150882,1150118-1150319,1148818-1149996	AT1G04300.3  CDS  gene_syn F19P19.26, F19P19_26  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT5G43560.2); Has 15485 Blast hits to 9800 proteins in 673 species: Archae - 16; Bacteria - 1225; Metazoa - 5601; Fungi - 1994; Plants - 616; Viruses - 101; Other Eukaryotes - 5932 (source: NCBI BLink).  protein_id AT1G04300.3p  transcript_id AT1G04300.3  protein_id AT1G04300.3p  transcript_id AT1G04300.3  
At1g04310	chr1:001155350	0.0	C/1155350-1157125,1155116-1155277	AT1G04310.1  CDS  gene_syn ERS2, ERS2 PROTEIN, ETHYLENE RESPONSE SENSOR 2, F19P19.25, F19P19_25  gene ERS2  function encodes an ethylene receptor related to bacterial two-component histidine kinases.  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process negative regulation of ethylene mediated signaling pathway|GO:0010105|7569898|TAS  go_function protein histidine kinase activity|GO:0004673||ISS  go_function glycogen synthase kinase 3 activity|GO:0004696|15703053|TAS  go_function receptor activity|GO:0004872|7569898|TAS  go_function ethylene binding|GO:0051740|15703053|IDA  product ERS2 (ETHYLENE RESPONSE SENSOR 2); ethylene binding / glycogen synthase kinase 3/ protein histidine kinase/ receptor  note ETHYLENE RESPONSE SENSOR 2 (ERS2); FUNCTIONS IN: ethylene binding, receptor activity, protein histidine kinase activity, glycogen synthase kinase 3 activity; INVOLVED IN: negative regulation of ethylene mediated signaling pathway; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region (InterPro:IPR003661), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: ETR2 (ethylene response 2); ethylene binding / glycogen synthase kinase 3/ protein histidine kinase/ receptor (TAIR:AT3G23150.1); Has 6424 Blast hits to 6310 proteins in 841 species: Archae - 27; Bacteria - 5090; Metazoa - 0; Fungi - 250; Plants - 704; Viruses - 0; Other Eukaryotes - 353 (source: NCBI BLink).  protein_id AT1G04310.1p  transcript_id AT1G04310.1  protein_id AT1G04310.1p  transcript_id AT1G04310.1  
At1g04320	chr1:001159023	0.0	W/1159023-1159093	AT1G04320.1  tRNA  gene_syn 51096.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: GCC)  transcript_id AT1G04320.1  
At1g04330	chr1:001161584	0.0	C/1161584-1161886	AT1G04330.1  CDS  gene_syn F19P19.24, F19P19_24  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23170.1); Has 63 Blast hits to 63 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G04330.1p  transcript_id AT1G04330.1  protein_id AT1G04330.1p  transcript_id AT1G04330.1  
At1g04340	chr1:001164670	0.0	C/1164670-1164737,1163972-1164086,1163791-1163880,1163606-1163704,1163345-1163452	AT1G04340.1  CDS  gene_syn F19P19.23, F19P19_23  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product lesion inducing protein-related  note lesion inducing protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HR-like lesion-inducer (InterPro:IPR008637); BEST Arabidopsis thaliana protein match is: lesion inducing protein-related (TAIR:AT5G43460.1); Has 99 Blast hits to 99 proteins in 21 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G04340.1p  transcript_id AT1G04340.1  protein_id AT1G04340.1p  transcript_id AT1G04340.1  
At1g04350	chr1:001165296	0.0	W/1165296-1165801,1165873-1166194,1166284-1166538	AT1G04350.1  CDS  gene_syn F19P19.22, F19P19_22  function encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function 2-oxoglutarate-dependent dioxygenase activity|GO:0010302||ISS  product 2-oxoglutarate-dependent dioxygenase, putative  note 2-oxoglutarate-dependent dioxygenase, putative; FUNCTIONS IN: 2-oxoglutarate-dependent dioxygenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT5G59540.1); Has 5572 Blast hits to 5558 proteins in 676 species: Archae - 0; Bacteria - 688; Metazoa - 121; Fungi - 531; Plants - 3056; Viruses - 0; Other Eukaryotes - 1176 (source: NCBI BLink).  protein_id AT1G04350.1p  transcript_id AT1G04350.1  protein_id AT1G04350.1p  transcript_id AT1G04350.1  
At1g04360	chr1:001167507	0.0	C/1167507-1168652	AT1G04360.1  CDS  gene_syn F19P19.21, F19P19_21  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G43420.1); Has 6245 Blast hits to 6224 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 1993; Fungi - 432; Plants - 2648; Viruses - 79; Other Eukaryotes - 1093 (source: NCBI BLink).  protein_id AT1G04360.1p  transcript_id AT1G04360.1  protein_id AT1G04360.1p  transcript_id AT1G04360.1  
At1g04370	chr1:001175177	0.0	W/1175177-1175578	AT1G04370.1  CDS  gene_syn ATERF14, Ethylene-responsive element binding factor 14, F19P19.19, F19P19_19  gene ATERF14  function encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9687012|TAS  go_function transcription factor activity|GO:0003700||ISS  product ATERF14 (Ethylene-responsive element binding factor 14); DNA binding / transcription factor  note Ethylene-responsive element binding factor 14 (ATERF14); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: ethylene mediated signaling pathway, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene-responsive factor, putative (TAIR:AT5G43410.1); Has 3937 Blast hits to 3712 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3927; Viruses - 2; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G04370.1p  transcript_id AT1G04370.1  protein_id AT1G04370.1p  transcript_id AT1G04370.1  
At1g04380	chr1:001177921	0.0	C/1177921-1178384,1177526-1177847,1177142-1177393	AT1G04380.1  CDS  gene_syn F19P19.18, F19P19_18  function encodes a protein similar to a 2-oxoglutarate-dependent dioxygenase  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function 2-oxoglutarate-dependent dioxygenase activity|GO:0010302||ISS  product 2-oxoglutarate-dependent dioxygenase, putative  note 2-oxoglutarate-dependent dioxygenase, putative; FUNCTIONS IN: 2-oxoglutarate-dependent dioxygenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase, putative (TAIR:AT1G04350.1); Has 5591 Blast hits to 5571 proteins in 683 species: Archae - 0; Bacteria - 708; Metazoa - 124; Fungi - 500; Plants - 3059; Viruses - 0; Other Eukaryotes - 1200 (source: NCBI BLink).  protein_id AT1G04380.1p  transcript_id AT1G04380.1  protein_id AT1G04380.1p  transcript_id AT1G04380.1  
At1g04390	chr1:001183530	0.0	C/1183530-1183615,1183302-1183428,1182691-1183198,1182454-1182587,1182081-1182323,1181669-1181769,1180717-1181481,1180479-1180631,1179678-1180110	AT1G04390.1  CDS  gene_syn F19P19.16, F19P19_16  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); Has 127 Blast hits to 118 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 38; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G04390.1p  transcript_id AT1G04390.1  protein_id AT1G04390.1p  transcript_id AT1G04390.1  
At1g04400	chr1:001187589	0.0	C/1187589-1187901,1187260-1187484,1186452-1187164,1185719-1186306	AT1G04400.1  CDS  gene_syn AT-PHH1, CRY2, CRYPTOCHROME 2, CRYPTOCHROME 2 APOPROTEIN, F19P19.14, F19P19_14, FHA, PHH1  gene CRY2  function Blue light receptor mediating blue-light regulated cotyledon expansion and flowering time. Positive regulator of the flowering-time gene CONSTANS. This gene possesses a light-induced CNT2 N-terminal homodimerisation domain.Involved in blue-light induced stomatal opening. Involved in triggering chromatin decondensation. An 80-residue motif (NC80) is sufficient to confer CRY2 s physiological function. It is proposed that the PHR domain and the C-terminal tail of the unphosphorylated CRY2 form a closed conformation to suppress the NC80 motif in the absence of light. In response to blue light, the C-terminal tail of CRY2 is phosphorylated and electrostatically repelled from the surface of the PHR domain to form an open conformation, resulting in derepression of the NC80 motif and signal transduction to trigger photomorphogenic responses. Cry2 phosphorylation and degradation both occur in the nucleus.  go_component vacuole|GO:0005773|15539469|IDA  go_component nucleus|GO:0005634|10476076|IDA  go_process chromatin remodeling|GO:0006338|17470059|IMP  go_process response to water deprivation|GO:0009414|16093319|IGI  go_process response to blue light|GO:0009637|9565033|IMP  go_process phototropism|GO:0009638|9565033|IGI  go_process regulation of flower development|GO:0009909|17259260|IDA  go_process positive regulation of flower development|GO:0009911|17259260|IMP  go_process regulation of meristem growth|GO:0010075|18424613|IGI  go_process stomatal movement|GO:0010118|16093319|IGI  go_process circadian regulation of calcium ion oscillation|GO:0010617|17982000|IMP  go_function blue light photoreceptor activity|GO:0009882|11493548|ISS  go_function protein homodimerization activity|GO:0042803|15805487|IPI  product CRY2 (CRYPTOCHROME 2); blue light photoreceptor/ protein homodimerization  note CRYPTOCHROME 2 (CRY2); FUNCTIONS IN: protein homodimerization activity, blue light photoreceptor activity; INVOLVED IN: in 9 processes; LOCATED IN: nucleus, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal (InterPro:IPR018394), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), Cryptochrome, plant (InterPro:IPR014134), Cryptochrome/DNA photolyase, class 1 (InterPro:IPR002081); BEST Arabidopsis thaliana protein match is: CRY1 (CRYPTOCHROME 1); ATP binding / blue light photoreceptor/ protein homodimerization/ protein kinase (TAIR:AT4G08920.1); Has 8475 Blast hits to 8465 proteins in 901 species: Archae - 55; Bacteria - 1877; Metazoa - 346; Fungi - 99; Plants - 568; Viruses - 2; Other Eukaryotes - 5528 (source: NCBI BLink).  protein_id AT1G04400.1p  transcript_id AT1G04400.1  protein_id AT1G04400.1p  transcript_id AT1G04400.1  
At1g04400	chr1:001187589	0.0	C/1187589-1187901,1187260-1187484,1186452-1187164,1185719-1186306	AT1G04400.2  CDS  gene_syn AT-PHH1, CRY2, CRYPTOCHROME 2, CRYPTOCHROME 2 APOPROTEIN, F19P19.14, F19P19_14, FHA, PHH1  gene CRY2  function Blue light receptor mediating blue-light regulated cotyledon expansion and flowering time. Positive regulator of the flowering-time gene CONSTANS. This gene possesses a light-induced CNT2 N-terminal homodimerisation domain.Involved in blue-light induced stomatal opening. Involved in triggering chromatin decondensation. An 80-residue motif (NC80) is sufficient to confer CRY2 s physiological function. It is proposed that the PHR domain and the C-terminal tail of the unphosphorylated CRY2 form a closed conformation to suppress the NC80 motif in the absence of light. In response to blue light, the C-terminal tail of CRY2 is phosphorylated and electrostatically repelled from the surface of the PHR domain to form an open conformation, resulting in derepression of the NC80 motif and signal transduction to trigger photomorphogenic responses. Cry2 phosphorylation and degradation both occur in the nucleus.  go_component vacuole|GO:0005773|15539469|IDA  go_component nucleus|GO:0005634|10476076|IDA  go_process chromatin remodeling|GO:0006338|17470059|IMP  go_process response to water deprivation|GO:0009414|16093319|IGI  go_process response to blue light|GO:0009637|9565033|IMP  go_process phototropism|GO:0009638|9565033|IGI  go_process regulation of flower development|GO:0009909|17259260|IDA  go_process positive regulation of flower development|GO:0009911|17259260|IMP  go_process regulation of meristem growth|GO:0010075|18424613|IGI  go_process stomatal movement|GO:0010118|16093319|IGI  go_process circadian regulation of calcium ion oscillation|GO:0010617|17982000|IMP  go_function blue light photoreceptor activity|GO:0009882|11493548|ISS  go_function protein homodimerization activity|GO:0042803|15805487|IPI  product CRY2 (CRYPTOCHROME 2); blue light photoreceptor/ protein homodimerization  note CRYPTOCHROME 2 (CRY2); FUNCTIONS IN: protein homodimerization activity, blue light photoreceptor activity; INVOLVED IN: in 9 processes; LOCATED IN: nucleus, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal (InterPro:IPR018394), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), Cryptochrome, plant (InterPro:IPR014134), Cryptochrome/DNA photolyase, class 1 (InterPro:IPR002081); BEST Arabidopsis thaliana protein match is: CRY1 (CRYPTOCHROME 1); ATP binding / blue light photoreceptor/ protein homodimerization/ protein kinase (TAIR:AT4G08920.1); Has 8475 Blast hits to 8465 proteins in 901 species: Archae - 55; Bacteria - 1877; Metazoa - 346; Fungi - 99; Plants - 568; Viruses - 2; Other Eukaryotes - 5528 (source: NCBI BLink).  protein_id AT1G04400.2p  transcript_id AT1G04400.2  protein_id AT1G04400.2p  transcript_id AT1G04400.2  
At1g04410	chr1:001191225	0.0	C/1191225-1191267,1190747-1190905,1190465-1190640,1190030-1190307,1189805-1189940,1189601-1189712,1189418-1189512	AT1G04410.1  CDS  gene_syn F19P19.13, F19P19_13  go_component nucleus|GO:0005634|14617066|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function malate dehydrogenase activity|GO:0016615||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_function L-malate dehydrogenase activity|GO:0030060||IEA  go_function malate dehydrogenase activity|GO:0016615||ISS  product malate dehydrogenase, cytosolic, putative  note malate dehydrogenase, cytosolic, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: response to cadmium ion, response to salt stress; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Malate dehydrogenase, NAD-dependent, cytosolic (InterPro:IPR011274), Lactate/malate dehydrogenase (InterPro:IPR001236), Malate dehydrogenase, NAD or NADP (InterPro:IPR010945), NAD(P)-binding (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: malate dehydrogenase, cytosolic, putative (TAIR:AT5G43330.1); Has 7871 Blast hits to 7869 proteins in 1725 species: Archae - 115; Bacteria - 3866; Metazoa - 1047; Fungi - 188; Plants - 460; Viruses - 0; Other Eukaryotes - 2195 (source: NCBI BLink).  protein_id AT1G04410.1p  transcript_id AT1G04410.1  protein_id AT1G04410.1p  transcript_id AT1G04410.1  
At1g04420	chr1:001191634	0.0	W/1191634-1191858,1191939-1192034,1192214-1192297,1192413-1192573,1192718-1192835,1192925-1193060,1193143-1193321,1193460-1193699	AT1G04420.1  CDS  gene_syn F19P19.12, F19P19_12  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process oxidation reduction|GO:0055114||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function aldo-keto reductase activity|GO:0004033||ISS  product aldo/keto reductase family protein  note aldo/keto reductase family protein; FUNCTIONS IN: oxidoreductase activity, aldo-keto reductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395); BEST Arabidopsis thaliana protein match is: KAB1 (POTASSIUM CHANNEL BETA SUBUNIT); oxidoreductase/ potassium channel (TAIR:AT1G04690.1); Has 17372 Blast hits to 17351 proteins in 1400 species: Archae - 300; Bacteria - 9458; Metazoa - 1333; Fungi - 1228; Plants - 519; Viruses - 0; Other Eukaryotes - 4534 (source: NCBI BLink).  protein_id AT1G04420.1p  transcript_id AT1G04420.1  protein_id AT1G04420.1p  transcript_id AT1G04420.1  
At1g04425	chr1:001194187	0.0	W/1194187-1196889	AT1G04425.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G04425.1  
At1g04430	chr1:001198860	0.0	W/1198860-1199114,1199197-1199361,1199459-1199641,1199710-1200304,1200424-1200536,1200643-1200863,1200962-1201301	AT1G04430.1  CDS  gene_syn F19P19.11, F19P19_11  go_component plasma membrane|GO:0005886|17151019|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  product dehydration-responsive protein-related  note dehydration-responsive protein-related; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive protein-related (TAIR:AT4G14360.2); Has 569 Blast hits to 556 proteins in 52 species: Archae - 0; Bacteria - 61; Metazoa - 0; Fungi - 0; Plants - 484; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT1G04430.1p  transcript_id AT1G04430.1  protein_id AT1G04430.1p  transcript_id AT1G04430.1  
At1g04430	chr1:001198860	0.0	W/1198860-1199114,1199197-1199361,1199459-1199641,1199710-1200304,1200424-1200536,1200643-1200863,1200962-1201301	AT1G04430.2  CDS  gene_syn F19P19.11, F19P19_11  go_component plasma membrane|GO:0005886|17151019|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  product dehydration-responsive protein-related  note dehydration-responsive protein-related; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive protein-related (TAIR:AT4G14360.2); Has 569 Blast hits to 556 proteins in 52 species: Archae - 0; Bacteria - 61; Metazoa - 0; Fungi - 0; Plants - 484; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT1G04430.2p  transcript_id AT1G04430.2  protein_id AT1G04430.2p  transcript_id AT1G04430.2  
At1g04440	chr1:001202815	0.0	W/1202815-1202890,1202976-1203016,1203104-1203173,1203272-1203420,1203495-1203590,1203698-1203768,1203844-1203905,1204044-1204107,1204182-1204266,1204393-1204519,1204619-1204704,1204795-1204858,1205115-1205251,1205386-1205664	AT1G04440.1  CDS  gene_syn CASEIN KINASE LIKE 13, CKL13, F19P19.10, F19P19_10  gene CKL13  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product CKL13 (CASEIN KINASE LIKE 13); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note CASEIN KINASE LIKE 13 (CKL13); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ckl8 (Casein Kinase I-like 8); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G43320.1); Has 39741 Blast hits to 38140 proteins in 1287 species: Archae - 11; Bacteria - 4854; Metazoa - 16565; Fungi - 3697; Plants - 4898; Viruses - 286; Other Eukaryotes - 9430 (source: NCBI BLink).  protein_id AT1G04440.1p  transcript_id AT1G04440.1  protein_id AT1G04440.1p  transcript_id AT1G04440.1  
At1g04445	chr1:001207344	0.0	W/1207344-1207862	AT1G04445.1  CDS  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G04445.1p  transcript_id AT1G04445.1  protein_id AT1G04445.1p  transcript_id AT1G04445.1  
At1g04450	chr1:001209006	0.0	W/1209006-1209060,1209159-1209259,1209347-1209853	AT1G04450.1  CDS  gene_syn F19P19.8, F19P19_8, RIC3, ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 3  gene RIC3  function Encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). It interacts with Rop1 and is involved in pollen tube growth and function, and exocytosis in the pollen tube tip. The protein most similar to RIC1 (family subgroup III). Gene is expressed predominantly in inflorescence and flower tissue. Interacts with ROP1 to modulate calcium ion influxes required to generate tip-focused calcium gradients.It  go_component cytoplasm|GO:0005737|11752391|IDA  go_component cytoplasm|GO:0005737|15824136|IDA  go_process elevation of cytosolic calcium ion concentration|GO:0007204|15824136|IMP  go_process pollen tube growth|GO:0009860|11752391|IMP  go_process regulation of exocytosis|GO:0017157|18591430|IDA  go_process regulation of actin filament depolymerization|GO:0030834|15824136|IMP  go_process regulation of calcium-mediated signaling|GO:0050848|15824136|IMP  go_process positive regulation of calcium-mediated signaling|GO:0050850|15824136|IMP  go_process establishment of vesicle localization|GO:0051650|18591430|IDA  go_function protein binding|GO:0005515|15824136|IPI  product RIC3 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 3); protein binding  note ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 3 (RIC3); FUNCTIONS IN: protein binding; INVOLVED IN: in 7 processes; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095); BEST Arabidopsis thaliana protein match is: RIC1 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 1); protein binding (TAIR:AT2G33460.1); Has 106 Blast hits to 106 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G04450.1p  transcript_id AT1G04450.1  protein_id AT1G04450.1p  transcript_id AT1G04450.1  
At1g04457	chr1:001210319	0.0	C/1210319-1210549	AT1G04457.1  pseudogenic_transcript  pseudo  function Pseudogene of AT2G33450; 50S ribosomal protein L28, chloroplast (CL28)  
At1g04470	chr1:001213980	0.0	C/1213980-1214591,1213230-1213897,1212486-1213158,1212222-1212408,1211177-1212144	AT1G04470.1  CDS  gene_syn F19P19.7, F19P19_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Munc13 homology 1 (InterPro:IPR014770), Protein of unknown function DUF810 (InterPro:IPR008528), Munc13 homology 2 (InterPro:IPR014772); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33420.1); Has 116 Blast hits to 109 proteins in 23 species: Archae - 0; Bacteria - 1; Metazoa - 4; Fungi - 4; Plants - 95; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G04470.1p  transcript_id AT1G04470.1  protein_id AT1G04470.1p  transcript_id AT1G04470.1  
At1g04480	chr1:001216110	0.0	W/1216110-1216122,1216244-1216528,1217133-1217257	AT1G04480.1  CDS  gene_syn F19P19.5, F19P19_5  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L23 (RPL23A)  note 60S ribosomal protein L23 (RPL23A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L14b/L23e (InterPro:IPR000218); BEST Arabidopsis thaliana protein match is: emb2171 (embryo defective 2171); structural constituent of ribosome (TAIR:AT3G04400.1); Has 6297 Blast hits to 6297 proteins in 1833 species: Archae - 236; Bacteria - 2977; Metazoa - 280; Fungi - 176; Plants - 586; Viruses - 0; Other Eukaryotes - 2042 (source: NCBI BLink).  protein_id AT1G04480.1p  transcript_id AT1G04480.1  protein_id AT1G04480.1p  transcript_id AT1G04480.1  
At1g04490	chr1:001218282	0.0	C/1218282-1219325,1218020-1218181	AT1G04490.1  CDS  gene_syn F19P19.4, F19P19_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root, stamen; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33360.2); Has 63 Blast hits to 63 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G04490.1p  transcript_id AT1G04490.1  protein_id AT1G04490.1p  transcript_id AT1G04490.1  
At1g04490	chr1:001218282	0.0	C/1218282-1219325,1218020-1218181	AT1G04490.2  CDS  gene_syn F19P19.4, F19P19_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root, stamen; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33360.2); Has 63 Blast hits to 63 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G04490.2p  transcript_id AT1G04490.2  protein_id AT1G04490.2p  transcript_id AT1G04490.2  
At1g04500	chr1:001224194	0.0	C/1224194-1224235,1222489-1223181,1222174-1222365,1221956-1222081,1221757-1221864	AT1G04500.1  CDS  gene_syn F19P19.3, F19P19_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product zinc finger CONSTANS-related  note zinc finger CONSTANS-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33350.2); Has 1014 Blast hits to 1014 proteins in 72 species: Archae - 0; Bacteria - 5; Metazoa - 2; Fungi - 2; Plants - 902; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).  protein_id AT1G04500.1p  transcript_id AT1G04500.1  protein_id AT1G04500.1p  transcript_id AT1G04500.1  
At1g04501	chr1:001224552	0.0	W/1224552-1224680	AT1G04501.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G04501.1p  transcript_id AT1G04501.1  protein_id AT1G04501.1p  transcript_id AT1G04501.1  
At1g04510	chr1:001226749	0.0	W/1226749-1226761,1226852-1226937,1227087-1227158,1227247-1227309,1227580-1227666,1227816-1227957,1228046-1228167,1228331-1228447,1228706-1228801,1228897-1228956,1229054-1229128,1229233-1229337,1229504-1229623,1229717-1229794,1229893-1229977,1230065-1230116,1230303-1230373,1230465-1230592	AT1G04510.1  CDS  gene_syn F19P19.2, F19P19_2  go_component nucleolus|GO:0005730|15496452|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, nucleotide binding; INVOLVED IN: response to cadmium ion; LOCATED IN: nucleolus, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), U box (InterPro:IPR003613), WD40 repeat, region (InterPro:IPR017986), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943), Pre-mRNA-splicing factor 19 (InterPro:IPR013915); BEST Arabidopsis thaliana protein match is: nucleotide binding / ubiquitin-protein ligase (TAIR:AT2G33340.2); Has 39753 Blast hits to 19409 proteins in 575 species: Archae - 62; Bacteria - 5219; Metazoa - 17707; Fungi - 7589; Plants - 3300; Viruses - 0; Other Eukaryotes - 5876 (source: NCBI BLink).  protein_id AT1G04510.1p  transcript_id AT1G04510.1  protein_id AT1G04510.1p  transcript_id AT1G04510.1  
At1g04510	chr1:001226749	0.0	W/1226749-1226761,1226852-1226937,1227087-1227158,1227247-1227309,1227580-1227666,1227816-1227957,1228046-1228167,1228331-1228447,1228706-1228801,1228897-1228956,1229054-1229128,1229233-1229337,1229504-1229623,1229717-1229794,1229893-1229977,1230065-1230116,1230303-1230379,1230471-1230592	AT1G04510.2  CDS  gene_syn F19P19.2, F19P19_2  go_component nucleolus|GO:0005730|15496452|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, nucleotide binding; INVOLVED IN: response to cadmium ion; LOCATED IN: nucleolus, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), WD40 repeat (InterPro:IPR001680), Pre-mRNA-splicing factor 19 (InterPro:IPR013915), WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: nucleotide binding / ubiquitin-protein ligase (TAIR:AT2G33340.2); Has 39665 Blast hits to 19422 proteins in 576 species: Archae - 58; Bacteria - 5242; Metazoa - 17676; Fungi - 7593; Plants - 3277; Viruses - 0; Other Eukaryotes - 5819 (source: NCBI BLink).  protein_id AT1G04510.2p  transcript_id AT1G04510.2  protein_id AT1G04510.2p  transcript_id AT1G04510.2  
At1g04520	chr1:001231852	0.0	W/1231852-1232272,1232605-1232991,1233493-1233600,1233780-1233787	AT1G04520.1  CDS  gene_syn F19P19.1, F19P19_1, PDLP2, PLASMODESMATA-LOCATED PROTEIN 2  gene PDLP2  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component plasmodesma|GO:0009506|18215111|IDA  go_process plasmodesmata-mediated intercellular transport|GO:0010497|18215111|IGI  go_function molecular_function|GO:0003674||ND  product PDLP2 (PLASMODESMATA-LOCATED PROTEIN 2)  note PLASMODESMATA-LOCATED PROTEIN 2 (PDLP2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation, plasmodesmata-mediated intercellular transport; LOCATED IN: plasmodesma; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: PDLP3 (PLASMODESMATA-LOCATED PROTEIN 3) (TAIR:AT2G33330.1); Has 635 Blast hits to 597 proteins in 41 species: Archae - 0; Bacteria - 31; Metazoa - 5; Fungi - 14; Plants - 583; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G04520.1p  transcript_id AT1G04520.1  protein_id AT1G04520.1p  transcript_id AT1G04520.1  
At1g04530	chr1:001235455	0.0	C/1235455-1235895,1235185-1235357,1234994-1235108,1234604-1234758,1234456-1234504	AT1G04530.1  CDS  gene_syn T1G11.22, T1G11_22  go_function binding|GO:0005488||IEA  product binding  note binding; FUNCTIONS IN: binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT4G17940.1); Has 445 Blast hits to 236 proteins in 47 species: Archae - 10; Bacteria - 76; Metazoa - 30; Fungi - 6; Plants - 278; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT1G04530.1p  transcript_id AT1G04530.1  protein_id AT1G04530.1p  transcript_id AT1G04530.1  
At1g04540	chr1:001237256	0.0	W/1237256-1239061	AT1G04540.1  CDS  gene_syn T1G11.21, T1G11_21  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  product C2 domain-containing protein  note C2 domain-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT2G33320.1); Has 359 Blast hits to 288 proteins in 52 species: Archae - 0; Bacteria - 12; Metazoa - 84; Fungi - 28; Plants - 186; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT1G04540.1p  transcript_id AT1G04540.1  protein_id AT1G04540.1p  transcript_id AT1G04540.1  
At1g04550	chr1:001240582	0.0	W/1240582-1240784,1241057-1241343,1241425-1241542,1241616-1241677,1241761-1241810	AT1G04550.2  CDS  gene_syn AUXIN-INDUCED PROTEIN 12, BDL, BODENLOS, IAA12, T1G11.20, T1G11_20  gene IAA12  function IAA12/BDL plays a role in auxin-mediated processes of apical-basal patterning in the embryo. bdl mutants lack a primary root meristem  go_component nucleus|GO:0005634||IEA  go_process response to auxin stimulus|GO:0009733|10068632|IGI  go_process embryonic pattern specification|GO:0009880|10068632|IMP  go_process xylem and phloem pattern formation|GO:0010051|18258861|IMP  go_process root development|GO:0048364|18258861|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription repressor activity|GO:0016564|18258861|IDA  product IAA12 (AUXIN-INDUCED PROTEIN 12); transcription factor/ transcription repressor  note AUXIN-INDUCED PROTEIN 12 (IAA12); FUNCTIONS IN: transcription repressor activity, transcription factor activity; INVOLVED IN: xylem and phloem pattern formation, response to auxin stimulus, embryonic pattern specification, root development; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA13; transcription factor (TAIR:AT2G33310.3); Has 1212 Blast hits to 1212 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1211; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G04550.2p  transcript_id AT1G04550.2  protein_id AT1G04550.2p  transcript_id AT1G04550.2  
At1g04550	chr1:001240582	0.0	W/1240582-1240784,1241057-1241375	AT1G04550.1  CDS  gene_syn AUXIN-INDUCED PROTEIN 12, BDL, BODENLOS, IAA12, T1G11.20, T1G11_20  gene IAA12  function IAA12/BDL plays a role in auxin-mediated processes of apical-basal patterning in the embryo. bdl mutants lack a primary root meristem  go_component nucleus|GO:0005634||IEA  go_process response to auxin stimulus|GO:0009733|10068632|IGI  go_process embryonic pattern specification|GO:0009880|10068632|IMP  go_process xylem and phloem pattern formation|GO:0010051|18258861|IMP  go_process root development|GO:0048364|18258861|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription repressor activity|GO:0016564|18258861|IDA  product IAA12 (AUXIN-INDUCED PROTEIN 12); transcription factor/ transcription repressor  note AUXIN-INDUCED PROTEIN 12 (IAA12); FUNCTIONS IN: transcription repressor activity, transcription factor activity; INVOLVED IN: xylem and phloem pattern formation, response to auxin stimulus, embryonic pattern specification, root development; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA13; transcription factor (TAIR:AT2G33310.3); Has 648 Blast hits to 648 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 648; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G04550.1p  transcript_id AT1G04550.1  protein_id AT1G04550.1p  transcript_id AT1G04550.1  
At1g04555	chr1:001242743	0.0	W/1242743-1242896,1243442-1243512,1243608-1243743,1243852-1243949	AT1G04555.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G33380.1); Has 49 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G04555.1p  transcript_id AT1G04555.1  protein_id AT1G04555.1p  transcript_id AT1G04555.1  
At1g04560	chr1:001245070	0.0	W/1245070-1245199,1245292-1245469,1245636-1245888	AT1G04560.1  CDS  gene_syn T1G11.19, T1G11_19  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product AWPM-19-like membrane family protein  note AWPM-19-like membrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: AWPM-19-like (InterPro:IPR008390); BEST Arabidopsis thaliana protein match is: AWPM-19-like membrane family protein (TAIR:AT1G29520.1); Has 99 Blast hits to 99 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G04560.1p  transcript_id AT1G04560.1  protein_id AT1G04560.1p  transcript_id AT1G04560.1  
At1g04570	chr1:001248117	0.0	C/1248117-1248600,1246859-1248003	AT1G04570.1  CDS  gene_syn T1G11.18, T1G11_18  go_component chloroplast|GO:0009507||IEA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product integral membrane transporter family protein  note integral membrane transporter family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, membrane; CONTAINS InterPro DOMAIN/s: Biopterin transport-related protein BT1 (InterPro:IPR004324), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: integral membrane transporter family protein (TAIR:AT2G33280.1); Has 457 Blast hits to 455 proteins in 149 species: Archae - 6; Bacteria - 186; Metazoa - 0; Fungi - 8; Plants - 126; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).  protein_id AT1G04570.1p  transcript_id AT1G04570.1  protein_id AT1G04570.1p  transcript_id AT1G04570.1  
At1g04580	chr1:001257375	0.0	C/1257375-1257510,1255277-1256884,1254866-1255125,1254541-1254750,1254220-1254438,1253182-1254147,1253012-1253107,1252827-1252925,1252542-1252731,1252212-1252441	AT1G04580.1  CDS  gene_syn AAO4, ALDEHYDE OXIDASE 2, ALDEHYDE OXIDASE 4, ARABIDOPSIS ALDEHYDE OXIDASE 4, ATAO-4, ATAO2, T1G11.17, T1G11_17  gene AAO4  function Encodes aldehyde oxidase AAO4 preferentially expressed in developing seeds.  go_component cytosol|GO:0005829|19297586|TAS  go_process abscisic acid biosynthetic process|GO:0009688|10972874|TAS  go_process glucosinolate metabolic process|GO:0019760|19297586|IMP  go_function aldehyde oxidase activity|GO:0004031||ISS  go_function aryl-aldehyde oxidase activity|GO:0018488|19297586|IDA  product AAO4 (ARABIDOPSIS ALDEHYDE OXIDASE 4); aldehyde oxidase/ aryl-aldehyde oxidase  note ARABIDOPSIS ALDEHYDE OXIDASE 4 (AAO4); FUNCTIONS IN: aryl-aldehyde oxidase activity, aldehyde oxidase activity; INVOLVED IN: glucosinolate metabolic process, abscisic acid biosynthetic process; LOCATED IN: cytosol; EXPRESSED IN: fruit; CONTAINS InterPro DOMAIN/s: Aldehyde oxidase/xanthine dehydrogenase (InterPro:IPR016208), Ferredoxin (InterPro:IPR001041), Molybdopterin dehydrogenase, FAD-binding (InterPro:IPR002346), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), Oxidoreductase, molybdopterin binding (InterPro:IPR000572), [2Fe-2S]-binding (InterPro:IPR002888), FAD-binding, type 2 (InterPro:IPR016166), CO dehydrogenase flavoprotein, C-terminal (InterPro:IPR005107), 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 (InterPro:IPR016169), Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead (InterPro:IPR000674), Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding (InterPro:IPR008274); BEST Arabidopsis thaliana protein match is: AAO3 (Abscisic ALDEHYDE OXIDASE 3); abscisic aldehyde oxidase/ aldehyde oxidase/ indole-3-acetaldehyde oxidase (TAIR:AT2G27150.2); Has 13018 Blast hits to 12615 proteins in 775 species: Archae - 155; Bacteria - 6276; Metazoa - 958; Fungi - 76; Plants - 145; Viruses - 0; Other Eukaryotes - 5408 (source: NCBI BLink).  protein_id AT1G04580.1p  transcript_id AT1G04580.1  protein_id AT1G04580.1p  transcript_id AT1G04580.1  
At1g04590	chr1:001261270	0.0	C/1261270-1261411,1260942-1260978,1260746-1260806,1260525-1260626,1260012-1260125,1259728-1259871,1259358-1259570,1259027-1259219,1258760-1258899	AT1G04590.1  CDS  gene_syn T1G11.16, T1G11_16  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: emb1417 (embryo defective 1417) (TAIR:AT4G21190.1); Has 54 Blast hits to 54 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G04590.1p  transcript_id AT1G04590.1  protein_id AT1G04590.1p  transcript_id AT1G04590.1  
At1g04590	chr1:001261270	0.0	C/1261270-1261411,1260942-1260978,1260746-1260806,1260525-1260626,1260012-1260125,1259728-1259871,1259358-1259570,1259027-1259228,1258760-1258899	AT1G04590.2  CDS  gene_syn T1G11.16, T1G11_16  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G18975.3); Has 54 Blast hits to 54 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G04590.2p  transcript_id AT1G04590.2  protein_id AT1G04590.2p  transcript_id AT1G04590.2  
At1g04600	chr1:001262123	0.0	W/1262123-1262125,1262556-1262681,1262897-1263040,1263175-1263320,1263412-1263568,1263681-1263739,1263833-1263992,1264094-1264243,1264310-1264446,1264533-1264679,1264760-1264861,1265159-1265216,1265291-1265392,1265492-1265529,1265614-1265740,1265823-1265993,1266077-1266208,1266314-1266423,1266552-1266612,1266815-1266992,1267076-1267281,1267395-1267514,1267771-1267869,1267996-1268283,1268406-1268558,1268673-1268822,1268940-1269104,1269192-1269331,1269452-1269566,1269645-1269665,1269771-1269848,1269937-1270107,1270272-1270424,1270572-1270748,1270841-1271131,1271199-1271269,1271367-1271466,1271543-1271599,1271678-1271734,1271941-1272021,1272101-1272177,1272262-1272376	AT1G04600.1  CDS  gene_syn ATXIA, MYOSIN XI A, T1G11.15, T1G11_15, XIA  gene XIA  function member of Myosin-like proteins  go_component myosin complex|GO:0016459||IEA  go_component myosin complex|GO:0016459||ISS  go_process actin filament-based movement|GO:0030048|11516337|TAS  go_function motor activity|GO:0003774|11516337|ISS  go_function motor activity|GO:0003774||ISS  go_function protein binding|GO:0005515||ISS  product XIA (MYOSIN XI A); motor/ protein binding  note MYOSIN XI A (XIA); FUNCTIONS IN: protein binding, motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: myosin complex; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Prefoldin (InterPro:IPR009053), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor region (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: XID; motor/ protein binding (TAIR:AT2G33240.1); Has 110296 Blast hits to 60794 proteins in 2188 species: Archae - 1424; Bacteria - 13624; Metazoa - 50724; Fungi - 8270; Plants - 3596; Viruses - 668; Other Eukaryotes - 31990 (source: NCBI BLink).  protein_id AT1G04600.1p  transcript_id AT1G04600.1  protein_id AT1G04600.1p  transcript_id AT1G04600.1  
At1g04610	chr1:001279524	0.0	W/1279524-1280237,1280400-1280771,1281104-1281331	AT1G04610.1  CDS  gene_syn T1G11.14, T1G11_14  go_function oxidoreductase activity|GO:0016491||IEA  go_process auxin biosynthetic process|GO:0009851|11209081|IMP  product flavin-containing monooxygenase / FMO (YUCCA3)  note flavin-containing monooxygenase / FMO (YUCCA3); FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: auxin biosynthetic process; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027); BEST Arabidopsis thaliana protein match is: flavin-containing monooxygenase, putative / FMO, putative (TAIR:AT2G33230.1); Has 6536 Blast hits to 6525 proteins in 719 species: Archae - 16; Bacteria - 2791; Metazoa - 669; Fungi - 952; Plants - 366; Viruses - 0; Other Eukaryotes - 1742 (source: NCBI BLink).  protein_id AT1G04610.1p  transcript_id AT1G04610.1  protein_id AT1G04610.1p  transcript_id AT1G04610.1  
At1g04620	chr1:001286411	0.0	C/1286411-1286492,1285896-1286001,1285719-1285803,1285516-1285627,1285285-1285369,1285139-1285180,1284926-1285004,1284790-1284841,1284628-1284690,1284356-1284453,1284243-1284278,1284101-1284162,1283969-1283996,1283794-1283873,1283639-1283708,1283483-1283540,1283258-1283322,1283068-1283162,1282869-1282959	AT1G04620.1  CDS  gene_syn T1G11.13, T1G11_13  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function coenzyme F420 hydrogenase activity|GO:0050454||ISS  product coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family  note coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family; FUNCTIONS IN: coenzyme F420 hydrogenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal (InterPro:IPR007525), Coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal (InterPro:IPR007516); Has 371 Blast hits to 370 proteins in 121 species: Archae - 138; Bacteria - 142; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT1G04620.1p  transcript_id AT1G04620.1  protein_id AT1G04620.1p  transcript_id AT1G04620.1  
At1g04625	chr1:001289694	0.0	C/1289694-1289820,1288232-1288788,1287831-1287920	AT1G04625.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT2G46460.1).  protein_id AT1G04625.1p  transcript_id AT1G04625.1  protein_id AT1G04625.1p  transcript_id AT1G04625.1  
At1g04630	chr1:001290772	0.0	C/1290772-1290986,1290152-1290223,1289921-1290065	AT1G04630.1  CDS  gene_syn MEE4, T1G11.12, T1G11_12, maternal effect embryo arrest 4  gene MEE4  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial membrane|GO:0031966|16407270|IDA  go_component respiratory chain complex I|GO:0045271|16407270|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process photorespiration|GO:0009853|16407270|TAS  go_function molecular_function|GO:0003674||ND  product MEE4 (maternal effect embryo arrest 4)  note maternal effect embryo arrest 4 (MEE4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy, photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, respiratory chain complex I; CONTAINS InterPro DOMAIN/s: GRIM-19 (InterPro:IPR009346); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33220.1); Has 226 Blast hits to 226 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 53; Plants - 38; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G04630.1p  transcript_id AT1G04630.1  protein_id AT1G04630.1p  transcript_id AT1G04630.1  
At1g04635	chr1:001291350	0.0	W/1291350-1291805	AT1G04635.1  CDS  gene_syn EMB1687, EMBRYO DEFECTIVE 1687  gene EMB1687  go_component vacuole|GO:0005773|15539469|IDA  go_function ribonuclease activity|GO:0004540||IEA  go_process tRNA processing|GO:0008033||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function ribonuclease P activity|GO:0004526||ISS  product EMB1687 (EMBRYO DEFECTIVE 1687); ribonuclease P/ ribonuclease  note EMBRYO DEFECTIVE 1687 (EMB1687); FUNCTIONS IN: ribonuclease activity, ribonuclease P activity; INVOLVED IN: embryonic development ending in seed dormancy, tRNA processing; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Ribonuclease P-related (InterPro:IPR002759); Has 168 Blast hits to 168 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 69; Fungi - 60; Plants - 26; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G04635.1p  transcript_id AT1G04635.1  protein_id AT1G04635.1p  transcript_id AT1G04635.1  
At1g04640	chr1:001292541	0.0	W/1292541-1293248	AT1G04640.1  CDS  gene_syn LIP2, LIPOYLTRANSFERASE 2  gene LIP2  function Lipoyltransferase, located in mitochondria but not found in chloroplasts  go_component mitochondrion|GO:0005739|11427685|IDA  go_process lipoic acid metabolic process|GO:0000273|11427685|IGI  go_function lipoyltransferase activity|GO:0017118|11427685|IGI  product LIP2 (LIPOYLTRANSFERASE 2); lipoyltransferase  note LIPOYLTRANSFERASE 2 (LIP2); FUNCTIONS IN: lipoyltransferase activity; INVOLVED IN: lipoic acid metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipoate-protein ligase B (InterPro:IPR000544), Biotin/lipoate A/B protein ligase (InterPro:IPR004143); BEST Arabidopsis thaliana protein match is: lipoyltransferase (LIP2p) (TAIR:AT4G31050.1); Has 4283 Blast hits to 4280 proteins in 1035 species: Archae - 13; Bacteria - 1910; Metazoa - 81; Fungi - 87; Plants - 50; Viruses - 0; Other Eukaryotes - 2142 (source: NCBI BLink).  protein_id AT1G04640.1p  transcript_id AT1G04640.1  protein_id AT1G04640.1p  transcript_id AT1G04640.1  
At1g04640	chr1:001292541	0.0	W/1292541-1293248	AT1G04640.2  CDS  gene_syn LIP2, LIPOYLTRANSFERASE 2  gene LIP2  function Lipoyltransferase, located in mitochondria but not found in chloroplasts  go_component mitochondrion|GO:0005739|11427685|IDA  go_process lipoic acid metabolic process|GO:0000273|11427685|IGI  go_function lipoyltransferase activity|GO:0017118|11427685|IGI  product LIP2 (LIPOYLTRANSFERASE 2); lipoyltransferase  note LIPOYLTRANSFERASE 2 (LIP2); FUNCTIONS IN: lipoyltransferase activity; INVOLVED IN: lipoic acid metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipoate-protein ligase B (InterPro:IPR000544), Biotin/lipoate A/B protein ligase (InterPro:IPR004143); BEST Arabidopsis thaliana protein match is: lipoyltransferase (LIP2p) (TAIR:AT4G31050.1); Has 4283 Blast hits to 4280 proteins in 1035 species: Archae - 13; Bacteria - 1910; Metazoa - 81; Fungi - 87; Plants - 50; Viruses - 0; Other Eukaryotes - 2142 (source: NCBI BLink).  protein_id AT1G04640.2p  transcript_id AT1G04640.2  protein_id AT1G04640.2p  transcript_id AT1G04640.2  
At1g04645	chr1:001293853	0.0	C/1293853-1294239	AT1G04645.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product self-incompatibility protein-related  note self-incompatibility protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: self-incompatibility protein-related (TAIR:AT3G16970.1); Has 100 Blast hits to 97 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G04645.1p  transcript_id AT1G04645.1  protein_id AT1G04645.1p  transcript_id AT1G04645.1  
At1g04650	chr1:001298856	0.0	C/1298856-1298903,1298471-1298563,1298122-1298256,1297945-1298034,1297706-1297855,1295941-1297535,1294893-1295775	AT1G04650.1  CDS  gene_syn T1G11.9, T1G11_9  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 27 Blast hits to 26 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G04650.1p  transcript_id AT1G04650.1  protein_id AT1G04650.1p  transcript_id AT1G04650.1  
At1g04660	chr1:001300668	0.0	C/1300668-1301306	AT1G04660.1  CDS  gene_syn T1G11.8, T1G11_8  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 107826 Blast hits to 25432 proteins in 1348 species: Archae - 224; Bacteria - 31451; Metazoa - 40710; Fungi - 6263; Plants - 8990; Viruses - 1254; Other Eukaryotes - 18934 (source: NCBI BLink).  protein_id AT1G04660.1p  transcript_id AT1G04660.1  protein_id AT1G04660.1p  transcript_id AT1G04660.1  
At1g04670	chr1:001301985	0.0	W/1301985-1302089,1302161-1302286,1302383-1302532	AT1G04670.1  CDS  gene_syn T1G11.23, T1G11_23  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, 4 anthesis, petal differentiation and expansion stage; Has 15 Blast hits to 15 proteins in 7 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G04670.1p  transcript_id AT1G04670.1  protein_id AT1G04670.1p  transcript_id AT1G04670.1  
At1g04680	chr1:001307680	0.0	C/1307680-1307780,1306792-1306872,1304823-1305465,1304621-1304724,1304373-1304511,1304052-1304279	AT1G04680.1  CDS  gene_syn T1G11.7, T1G11_7  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function lyase activity|GO:0016829||ISS  go_function pectate lyase activity|GO:0030570||ISS  product pectate lyase family protein  note pectate lyase family protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectate lyase family protein (TAIR:AT4G13710.1); Has 926 Blast hits to 921 proteins in 162 species: Archae - 0; Bacteria - 377; Metazoa - 0; Fungi - 139; Plants - 402; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G04680.1p  transcript_id AT1G04680.1  protein_id AT1G04680.1p  transcript_id AT1G04680.1  
At1g04684	chr1:001310430	0.0	C/1310430-1310579	AT1G04684.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G04684.1p  transcript_id AT1G04684.1  protein_id AT1G04684.1p  transcript_id AT1G04684.1  
At1g04690	chr1:001313662	0.0	W/1313662-1314029,1314464-1314659,1314780-1314923,1315041-1315205,1315307-1315420	AT1G04690.1  CDS  gene_syn K+ CHANNEL BETA SUBUNIT PROTEIN, KAB1, KV-BETA1, POTASSIUM CHANNEL BETA SUBUNIT, POTASSIUM CHANNEL BETA SUBUNIT HOMOLOG, T1G11.6, T1G11_6  gene KAB1  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process potassium ion transport|GO:0006813||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process potassium ion transport|GO:0006813||ISS  go_function potassium channel activity|GO:0005267||ISS  product KAB1 (POTASSIUM CHANNEL BETA SUBUNIT); oxidoreductase/ potassium channel  note POTASSIUM CHANNEL BETA SUBUNIT (KAB1); FUNCTIONS IN: oxidoreductase activity, potassium channel activity; INVOLVED IN: oxidation reduction, potassium ion transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Potassium channel, voltage-dependent, beta subunit, KCNAB-related (InterPro:IPR005399); BEST Arabidopsis thaliana protein match is: aldo/keto reductase family protein (TAIR:AT1G60690.1); Has 17446 Blast hits to 17422 proteins in 1383 species: Archae - 314; Bacteria - 9995; Metazoa - 800; Fungi - 1248; Plants - 507; Viruses - 0; Other Eukaryotes - 4582 (source: NCBI BLink).  protein_id AT1G04690.1p  transcript_id AT1G04690.1  protein_id AT1G04690.1p  transcript_id AT1G04690.1  
At1g04700	chr1:001316919	0.0	W/1316919-1318787,1318867-1319187,1319285-1319524,1319605-1319768,1319852-1319999,1320088-1320210,1320286-1320373,1320478-1320653	AT1G04700.1  CDS  gene_syn T1G11.5, T1G11_5  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, protein kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT3G24715.1); Has 85559 Blast hits to 84432 proteins in 3568 species: Archae - 48; Bacteria - 6917; Metazoa - 39046; Fungi - 6565; Plants - 18076; Viruses - 417; Other Eukaryotes - 14490 (source: NCBI BLink).  protein_id AT1G04700.1p  transcript_id AT1G04700.1  protein_id AT1G04700.1p  transcript_id AT1G04700.1  
At1g04710	chr1:001321941	0.0	W/1321941-1322018,1322257-1322321,1322407-1322491,1322573-1322699,1322788-1322886,1322967-1323034,1323132-1323239,1323323-1323400,1323506-1323638,1323732-1323828,1323905-1324028,1324134-1324242,1324308-1324391,1324480-1324556	AT1G04710.1  CDS  gene_syn 3-KETO-ACYL-COA THIOLASE 1, KAT1, PEROXISOMAL 3-KETOACYL-COA THIOLASE 4, PKT4, T1G11.4, T1G11_4  gene PKT4  function EC2.3.1.16 thiolase.  go_component vacuole|GO:0005773|15539469|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_process metabolic process|GO:0008152||IEA  go_process fatty acid oxidation|GO:0019395||IEA  go_process catechol catabolic process, ortho-cleavage|GO:0019615||IEA  go_process protocatechuate catabolic process, ortho-cleavage|GO:0019618||IEA  go_function catalytic activity|GO:0003824||IEA  go_function acetyl-CoA C-acyltransferase activity|GO:0003988||ISS  product PKT4 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 4); acetyl-CoA C-acyltransferase/ catalytic  note PEROXISOMAL 3-KETOACYL-COA THIOLASE 4 (PKT4); FUNCTIONS IN: catalytic activity, acetyl-CoA C-acyltransferase activity; INVOLVED IN: catechol catabolic process, ortho-cleavage, protocatechuate catabolic process, ortho-cleavage, metabolic process, fatty acid oxidation; LOCATED IN: peroxisome, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase (InterPro:IPR002155), Thiolase-like (InterPro:IPR016039), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: PKT3 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 3); acetyl-CoA C-acyltransferase (TAIR:AT2G33150.1); Has 15493 Blast hits to 15479 proteins in 1310 species: Archae - 231; Bacteria - 7938; Metazoa - 831; Fungi - 423; Plants - 174; Viruses - 0; Other Eukaryotes - 5896 (source: NCBI BLink).  protein_id AT1G04710.1p  transcript_id AT1G04710.1  protein_id AT1G04710.1p  transcript_id AT1G04710.1  
At1g04720	chr1:001324923	0.0	W/1324923-1324960	AT1G04720.1  tRNA  gene_syn 50893.TRNA-MET-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Met (anticodon: CAT)  transcript_id AT1G04720.1  
At1g04730	chr1:001330680	0.0	C/1330680-1331086,1330474-1330631,1330147-1330346,1329764-1330036,1329559-1329645,1329319-1329420,1329148-1329213,1328722-1328882,1328457-1328501,1328034-1328128,1327837-1327904,1327572-1327640,1327394-1327491,1327225-1327306,1327044-1327122,1326637-1326815,1326340-1326531,1326194-1326253,1325855-1326144,1325590-1325689,1325385-1325438	AT1G04730.1  CDS  gene_syn T1G11.3, T1G11_3  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATPase activity|GO:0016887||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: AtRFC1 (replication factor C 1); ATP binding / DNA binding / DNA clamp loader/ nucleoside-triphosphatase/ nucleotide binding (TAIR:AT5G22010.1); Has 2914 Blast hits to 2907 proteins in 426 species: Archae - 268; Bacteria - 302; Metazoa - 605; Fungi - 480; Plants - 212; Viruses - 18; Other Eukaryotes - 1029 (source: NCBI BLink).  protein_id AT1G04730.1p  transcript_id AT1G04730.1  protein_id AT1G04730.1p  transcript_id AT1G04730.1  
At1g04750	chr1:001333237	0.0	C/1333237-1333426,1332589-1332730,1332389-1332509,1332137-1332199,1331857-1332000	AT1G04750.1  CDS  gene_syn AT VAMP7B, ATVAMP721, VAMP721, VAMP7B, VESICLE-ASSOCIATED MEMBRANE PROTEIN 721, VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B  gene VAMP721  function vesicle-associated membrane protein 7B (At VAMP7B) mRNA,  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process transport|GO:0006810||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_component endosome|GO:0005768|15876431|TAS  go_component plasma membrane|GO:0005886|15876431|TAS  go_component membrane|GO:0016020||ISS  go_function molecular_function|GO:0003674||ND  product VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)  note VESICLE-ASSOCIATED MEMBRANE PROTEIN 721 (VAMP721); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: endosome, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) (TAIR:AT2G33120.1); Has 1809 Blast hits to 1809 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 842; Fungi - 296; Plants - 364; Viruses - 0; Other Eukaryotes - 307 (source: NCBI BLink).  protein_id AT1G04750.1p  transcript_id AT1G04750.1  protein_id AT1G04750.1p  transcript_id AT1G04750.1  
At1g04750	chr1:001333351	0.0	C/1333351-1333426,1332589-1332730,1332389-1332509,1332137-1332199,1331857-1332000	AT1G04750.2  CDS  gene_syn AT VAMP7B, ATVAMP721, VAMP721, VAMP7B, VESICLE-ASSOCIATED MEMBRANE PROTEIN 721, VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B  gene VAMP721  function vesicle-associated membrane protein 7B (At VAMP7B) mRNA,  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process transport|GO:0006810||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_component endosome|GO:0005768|15876431|TAS  go_component plasma membrane|GO:0005886|15876431|TAS  go_component membrane|GO:0016020||ISS  go_function molecular_function|GO:0003674||ND  product VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)  note VESICLE-ASSOCIATED MEMBRANE PROTEIN 721 (VAMP721); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: endosome, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) (TAIR:AT2G33120.1); Has 1657 Blast hits to 1657 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 806; Fungi - 266; Plants - 312; Viruses - 0; Other Eukaryotes - 273 (source: NCBI BLink).  protein_id AT1G04750.2p  transcript_id AT1G04750.2  protein_id AT1G04750.2p  transcript_id AT1G04750.2  
At1g04760	chr1:001334760	0.0	W/1334760-1334949,1335332-1335473,1335563-1335683,1335768-1335830,1335924-1336070	AT1G04760.1  CDS  gene_syn ATVAMP726, F13M7.25, F13M7_25, VAMP726, VESICLE-ASSOCIATED MEMBRANE PROTEIN 726  gene ATVAMP726  function member of Synaptobrevin -like protein family  go_component chloroplast|GO:0009507|15028209|IDA  go_process transport|GO:0006810||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_component endosome|GO:0005768|15876431|TAS  go_component plasma membrane|GO:0005886|15876431|TAS  go_component membrane|GO:0016020||ISS  go_function molecular_function|GO:0003674||ND  product ATVAMP726  note ATVAMP726; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: endosome, plasma membrane, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: ATVAMP725 (TAIR:AT2G32670.1); Has 1806 Blast hits to 1806 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 830; Fungi - 294; Plants - 363; Viruses - 0; Other Eukaryotes - 319 (source: NCBI BLink).  protein_id AT1G04760.1p  transcript_id AT1G04760.1  protein_id AT1G04760.1p  transcript_id AT1G04760.1  
At1g04770	chr1:001337648	0.0	C/1337648-1337767,1337344-1337556,1337087-1337242,1336564-1336986	AT1G04770.1  CDS  gene_syn F13M7.24, F13M7_24  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product male sterility MS5 family protein  note male sterility MS5 family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: ATSDI1 (SULPHUR DEFICIENCY-INDUCED 1); binding (TAIR:AT5G48850.1); Has 145 Blast hits to 145 proteins in 21 species: Archae - 0; Bacteria - 17; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G04770.1p  transcript_id AT1G04770.1  protein_id AT1G04770.1p  transcript_id AT1G04770.1  
At1g04778	chr1:001339947	0.0	W/1339947-1340117	AT1G04778.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G04778.1p  transcript_id AT1G04778.1  protein_id AT1G04778.1p  transcript_id AT1G04778.1  
At1g04780	chr1:001341340	0.0	C/1341340-1342965,1340891-1341259	AT1G04780.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT3G24210.1); Has 832 Blast hits to 578 proteins in 80 species: Archae - 0; Bacteria - 8; Metazoa - 576; Fungi - 12; Plants - 146; Viruses - 2; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT1G04780.1p  transcript_id AT1G04780.1  protein_id AT1G04780.1p  transcript_id AT1G04780.1  
At1g04790	chr1:001345469	0.0	W/1345469-1346241,1346359-1346839,1346942-1347040,1347238-1347438,1347527-1347615,1347705-1347804,1347899-1347997,1348081-1348143	AT1G04790.1  CDS  gene_syn F13M7.22, F13M7_22  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: SDIR1 (SALT- AND DROUGHT-INDUCED RING FINGER1); protein binding / ubiquitin-protein ligase/ zinc ion binding (TAIR:AT3G55530.1); Has 6374 Blast hits to 6356 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 2257; Fungi - 483; Plants - 2544; Viruses - 68; Other Eukaryotes - 1022 (source: NCBI BLink).  protein_id AT1G04790.1p  transcript_id AT1G04790.1  protein_id AT1G04790.1p  transcript_id AT1G04790.1  
At1g04800	chr1:001348635	0.0	C/1348635-1349237	AT1G04800.1  CDS  gene_syn F13M7.21, F13M7_21  go_component endomembrane system|GO:0012505||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; Has 100341 Blast hits to 23884 proteins in 1440 species: Archae - 160; Bacteria - 31051; Metazoa - 31586; Fungi - 6910; Plants - 10047; Viruses - 1434; Other Eukaryotes - 19153 (source: NCBI BLink).  protein_id AT1G04800.1p  transcript_id AT1G04800.1  protein_id AT1G04800.1p  transcript_id AT1G04800.1  
At1g04810	chr1:001350304	0.0	W/1350304-1350449,1350833-1350902,1351107-1351212,1351526-1351634,1351713-1351881,1352071-1352531,1352638-1352773,1352876-1353124,1353224-1353444,1353541-1353799,1353921-1354153,1354240-1354738,1354914-1355261	AT1G04810.1  CDS  gene_syn F13M7.20, F13M7_20  go_component plasma membrane|GO:0005886|17317660|IDA  go_function binding|GO:0005488||IEA  go_function enzyme regulator activity|GO:0030234||IEA  go_component nucleus|GO:0005634|11742986|TAS  go_component proteasome regulatory particle, base subcomplex|GO:0008540|9741626|TAS  go_component proteasome regulatory particle, base subcomplex|GO:0008540||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_process protein catabolic process|GO:0030163|11742986|TAS  product 26S proteasome regulatory subunit, putative  note 26S proteasome regulatory subunit, putative; FUNCTIONS IN: enzyme regulator activity, binding; INVOLVED IN: protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Proteasome/cyclosome, regulatory subunit (InterPro:IPR002015), Armadillo-type fold (InterPro:IPR016024), 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (InterPro:IPR016642); BEST Arabidopsis thaliana protein match is: 26S proteasome regulatory subunit, putative (TAIR:AT2G32730.1); Has 813 Blast hits to 749 proteins in 190 species: Archae - 12; Bacteria - 25; Metazoa - 307; Fungi - 211; Plants - 86; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink).  protein_id AT1G04810.1p  transcript_id AT1G04810.1  protein_id AT1G04810.1p  transcript_id AT1G04810.1  
At1g04820	chr1:001358174	0.0	C/1358174-1358266,1357158-1357763,1356421-1357074	AT1G04820.1  CDS  gene_syn F13M7.19, TUA4, TUBULIN ALPHA-4 CHAIN  gene TUA4  function Encodes an alpha tubulin isoform that is expressed in roots, leaves and flowers.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytosol|GO:0005829|18433157|IDA  go_component tubulin complex|GO:0045298|1498608|ISS  go_process microtubule-based process|GO:0007017|1498608|TAS  go_function structural constituent of cytoskeleton|GO:0005200|1498608|ISS  product TUA4; structural constituent of cytoskeleton  note TUA4; FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: response to cadmium ion, microtubule-based process; LOCATED IN: cytosol, tubulin complex, cell wall, plasma membrane, chloroplast; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alpha tubulin (InterPro:IPR002452), Tubulin, conserved site (InterPro:IPR017975), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase (InterPro:IPR003008), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: TUA2; structural constituent of cytoskeleton (TAIR:AT1G50010.1); Has 16390 Blast hits to 16316 proteins in 3499 species: Archae - 0; Bacteria - 25; Metazoa - 3558; Fungi - 9031; Plants - 1008; Viruses - 0; Other Eukaryotes - 2768 (source: NCBI BLink).  protein_id AT1G04820.1p  transcript_id AT1G04820.1  protein_id AT1G04820.1p  transcript_id AT1G04820.1  
At1g04830	chr1:001361539	0.0	C/1361539-1361844,1361318-1361410,1361075-1361179,1360680-1360832,1360438-1360536,1360225-1360353,1359720-1359899,1359381-1359497,1359087-1359251	AT1G04830.1  CDS  gene_syn F13M7.18, F13M7_18  go_component intracellular|GO:0005622||IEA  go_process regulation of Rab GTPase activity|GO:0032313||IEA  go_function RAB GTPase activator activity|GO:0005097||IEA  product RabGAP/TBC domain-containing protein  note RabGAP/TBC domain-containing protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: RabGAP/TBC domain-containing protein (TAIR:AT4G13730.1); Has 2859 Blast hits to 2782 proteins in 166 species: Archae - 0; Bacteria - 2; Metazoa - 1558; Fungi - 436; Plants - 302; Viruses - 0; Other Eukaryotes - 561 (source: NCBI BLink).  protein_id AT1G04830.1p  transcript_id AT1G04830.1  protein_id AT1G04830.1p  transcript_id AT1G04830.1  
At1g04840	chr1:001363798	0.0	C/1363798-1364962,1362867-1363699	AT1G04840.1  CDS  gene_syn F13M7.17, F13M7_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G08070.1); Has 14411 Blast hits to 5349 proteins in 182 species: Archae - 0; Bacteria - 4; Metazoa - 156; Fungi - 83; Plants - 13901; Viruses - 0; Other Eukaryotes - 267 (source: NCBI BLink).  protein_id AT1G04840.1p  transcript_id AT1G04840.1  protein_id AT1G04840.1p  transcript_id AT1G04840.1  
At1g04850	chr1:001368539	0.0	C/1368539-1368706,1367790-1367934,1367613-1367708,1367147-1367223,1366807-1366886,1366601-1366661,1366391-1366458,1366218-1366299,1366039-1366128,1365873-1365950,1365612-1365731,1365311-1365487	AT1G04850.1  CDS  gene_syn F13M7.16, F13M7_16  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product ubiquitin-associated (UBA)/TS-N domain-containing protein  note ubiquitin-associated (UBA)/TS-N domain-containing protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), PUG (InterPro:IPR006567), Zinc finger, C2H2-type (InterPro:IPR007087), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48690.1); Has 17438 Blast hits to 9965 proteins in 571 species: Archae - 30; Bacteria - 1031; Metazoa - 7907; Fungi - 1971; Plants - 445; Viruses - 50; Other Eukaryotes - 6004 (source: NCBI BLink).  protein_id AT1G04850.1p  transcript_id AT1G04850.1  protein_id AT1G04850.1p  transcript_id AT1G04850.1  
At1g04860	chr1:001369646	0.0	C/1369646-1372290,1369306-1369546	AT1G04860.1  CDS  gene_syn ATUBP2, F13M7.15, F13M7_15, UBIQUITIN-SPECIFIC PROTEASE 2, UBP2  gene UBP2  function Encodes a ubiquitin-specific protease.  go_component chloroplast|GO:0009507|15028209|IDA  go_component proteasome complex|GO:0000502|12663224|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|12663224|TAS  go_function ubiquitin-specific protease activity|GO:0004843|11115897|IMP  go_function ubiquitin-specific protease activity|GO:0004843||ISS  product UBP2 (UBIQUITIN-SPECIFIC PROTEASE 2); ubiquitin-specific protease  note UBIQUITIN-SPECIFIC PROTEASE 2 (UBP2); FUNCTIONS IN: ubiquitin-specific protease activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome complex, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, UBP-type (InterPro:IPR001607), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: UBP1 (UBIQUITIN-SPECIFIC PROTEASE 1); ubiquitin thiolesterase/ ubiquitin-specific protease/ zinc ion binding (TAIR:AT2G32780.1); Has 7951 Blast hits to 5108 proteins in 200 species: Archae - 0; Bacteria - 38; Metazoa - 4439; Fungi - 1245; Plants - 807; Viruses - 5; Other Eukaryotes - 1417 (source: NCBI BLink).  protein_id AT1G04860.1p  transcript_id AT1G04860.1  protein_id AT1G04860.1p  transcript_id AT1G04860.1  
At1g04870	chr1:001375029	0.0	C/1375029-1375128,1374742-1374847,1374248-1374437,1373917-1374102,1373751-1373834,1373485-1373661	AT1G04870.1  CDS  gene_syn ATPRMT10, F13M7.14, F13M7_14, PRMT10  gene PRMT10  function Encodes a type I protein arginine methyltransferase based on the At1g04870.2 gene model. PRMT10 can catalyze the asymmetric dimethylation of arginine 3 on histone 4 and can also methylate myelin basic protein in vitro. Mutants lacking PRMT10 flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts.  go_process vegetative to reproductive phase transition|GO:0010228|18660432|IGI  go_function methyltransferase activity|GO:0008168||ISS  product PRMT10; methyltransferase  note PRMT10; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: vegetative to reproductive phase transition; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: PRMT6 (PROTEIN ARGININE METHYLTRANSFERASE 6); methyltransferase (TAIR:AT3G20020.1); Has 1207 Blast hits to 1203 proteins in 206 species: Archae - 0; Bacteria - 10; Metazoa - 723; Fungi - 161; Plants - 137; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).  protein_id AT1G04870.1p  transcript_id AT1G04870.1  protein_id AT1G04870.1p  transcript_id AT1G04870.1  
At1g04870	chr1:001375383	0.0	C/1375383-1375598,1375029-1375221,1374742-1374847,1374248-1374437,1373917-1374102,1373751-1373834,1373485-1373661	AT1G04870.2  CDS  gene_syn ATPRMT10, F13M7.14, F13M7_14, PRMT10  gene PRMT10  function Encodes a type I protein arginine methyltransferase based on the At1g04870.2 gene model. PRMT10 can catalyze the asymmetric dimethylation of arginine 3 on histone 4 and can also methylate myelin basic protein in vitro. Mutants lacking PRMT10 flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts.  go_component cytoplasm|GO:0005737||IEA  go_process vegetative to reproductive phase transition|GO:0010228|18007657|IMP  go_process peptidyl-arginine methylation, to asymmetrical-dimethyl arginine|GO:0019919|18007657|IDA  go_function histone-arginine N-methyltransferase activity|GO:0008469|18007657|IDA  go_function [myelin basic protein]-arginine N-methyltransferase activity|GO:0016277|18007657|IDA  go_function protein-arginine omega-N monomethyltransferase activity|GO:0035241|18007657|IDA  go_function protein-arginine omega-N asymmetric methyltransferase activity|GO:0035242|18007657|IDA  go_process vegetative to reproductive phase transition|GO:0010228|18660432|IGI  go_function methyltransferase activity|GO:0008168||ISS  product PRMT10; [myelin basic protein]-arginine N-methyltransferase/ histone-arginine N-methyltransferase/ methyltransferase/ protein-arginine omega-N asymmetric methyltransferase/ protein-arginine omega-N monomethyltransferase  note PRMT10; FUNCTIONS IN: histone-arginine N-methyltransferase activity, methyltransferase activity, protein-arginine omega-N asymmetric methyltransferase activity, [myelin basic protein]-arginine N-methyltransferase activity, protein-arginine omega-N monomethyltransferase activity; INVOLVED IN: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine, vegetative to reproductive phase transition; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal L11 methyltransferase (InterPro:IPR010456); BEST Arabidopsis thaliana protein match is: PRMT6 (PROTEIN ARGININE METHYLTRANSFERASE 6); methyltransferase (TAIR:AT3G20020.1); Has 2142 Blast hits to 2134 proteins in 448 species: Archae - 30; Bacteria - 525; Metazoa - 975; Fungi - 166; Plants - 175; Viruses - 0; Other Eukaryotes - 271 (source: NCBI BLink).  protein_id AT1G04870.2p  transcript_id AT1G04870.2  protein_id AT1G04870.2p  transcript_id AT1G04870.2  
At1g04880	chr1:001378113	0.0	C/1378113-1378264,1377665-1377743,1377354-1377510,1377139-1377261,1376620-1377035,1376106-1376525	AT1G04880.1  CDS  gene_syn F13M7.13, F13M7_13  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein  note high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910), AT-rich interaction region (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein (TAIR:AT1G76110.1); Has 2702 Blast hits to 2465 proteins in 232 species: Archae - 0; Bacteria - 4; Metazoa - 1928; Fungi - 217; Plants - 242; Viruses - 2; Other Eukaryotes - 309 (source: NCBI BLink).  protein_id AT1G04880.1p  transcript_id AT1G04880.1  protein_id AT1G04880.1p  transcript_id AT1G04880.1  
At1g04890	chr1:001382351	0.0	C/1382351-1382546,1381276-1382249,1381116-1381181	AT1G04890.1  CDS  gene_syn F13M7.12, F13M7_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Intermediate filament protein, conserved site (InterPro:IPR018039), Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13630.1); Has 6609 Blast hits to 4661 proteins in 382 species: Archae - 48; Bacteria - 283; Metazoa - 4004; Fungi - 343; Plants - 346; Viruses - 6; Other Eukaryotes - 1579 (source: NCBI BLink).  protein_id AT1G04890.1p  transcript_id AT1G04890.1  protein_id AT1G04890.1p  transcript_id AT1G04890.1  
At1g04900	chr1:001383912	0.0	W/1383912-1384040,1384340-1384451,1384659-1384741,1384837-1384902,1385401-1385501,1385647-1385765,1386109-1386149,1386250-1386338,1386410-1386569,1386641-1386757,1387024-1387068,1387203-1387334,1387427-1387561	AT1G04900.1  CDS  gene_syn F13M7.11, F13M7_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF185 (InterPro:IPR003788); Has 159 Blast hits to 155 proteins in 81 species: Archae - 0; Bacteria - 35; Metazoa - 2; Fungi - 68; Plants - 25; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G04900.1p  transcript_id AT1G04900.1  protein_id AT1G04900.1p  transcript_id AT1G04900.1  
At1g04910	chr1:001391067	0.0	C/1391067-1391074,1390777-1390936,1390451-1390529,1390264-1390334,1389993-1390081,1389581-1389704,1389204-1389487,1388881-1389010,1388101-1388715	AT1G04910.1  CDS  gene_syn F13M7.10, F13M7_10  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22460.1); Has 440 Blast hits to 425 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 440; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G04910.1p  transcript_id AT1G04910.1  protein_id AT1G04910.1p  transcript_id AT1G04910.1  
At1g04920	chr1:001395463	0.0	C/1395463-1395756,1395145-1395377,1395008-1395071,1394231-1394926,1394014-1394148,1393796-1393927,1393480-1393710,1393269-1393331,1392257-1393192,1392056-1392183,1391674-1391950	AT1G04920.1  CDS  gene_syn ATSPS3F, F13M7.9, F13M7_9, sucrose phosphate synthase 3F  gene ATSPS3F  function Encodes a protein with putative sucrose-phosphate synthase activity.  go_process sucrose metabolic process|GO:0005985||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function sucrose-phosphate synthase activity|GO:0046524|16876912|RCA  go_component cellular_component|GO:0005575||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product ATSPS3F (sucrose phosphate synthase 3F); sucrose-phosphate synthase/ transferase, transferring glycosyl groups  note sucrose phosphate synthase 3F (ATSPS3F); FUNCTIONS IN: sucrose-phosphate synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process, sucrose metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sucrose-6F-phosphate phosphohydrolase, plant and cyanobacteria (InterPro:IPR006380), Sucrose phosphate synthase, plant (InterPro:IPR012819), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: ATSPS1F (sucrose phosphate synthase 1F); sucrose-phosphate synthase/ transferase, transferring glycosyl groups (TAIR:AT5G20280.1); Has 5739 Blast hits to 5634 proteins in 888 species: Archae - 231; Bacteria - 3207; Metazoa - 12; Fungi - 66; Plants - 485; Viruses - 0; Other Eukaryotes - 1738 (source: NCBI BLink).  protein_id AT1G04920.1p  transcript_id AT1G04920.1  protein_id AT1G04920.1p  transcript_id AT1G04920.1  
At1g04930	chr1:001398440	0.0	C/1398440-1398988,1397830-1397882,1397668-1397707,1397497-1397577,1397011-1397124,1396786-1396865,1396546-1396627	AT1G04930.1  CDS  gene_syn F13M7.8, F13M7_8  go_component chloroplast|GO:0009507||IEA  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT2G32840.1); Has 1563 Blast hits to 1268 proteins in 183 species: Archae - 0; Bacteria - 127; Metazoa - 510; Fungi - 165; Plants - 332; Viruses - 182; Other Eukaryotes - 247 (source: NCBI BLink).  protein_id AT1G04930.1p  transcript_id AT1G04930.1  protein_id AT1G04930.1p  transcript_id AT1G04930.1  
At1g04940	chr1:001399588	0.0	W/1399588-1399774,1399979-1400616	AT1G04940.1  CDS  gene_syn F13M7.7, F13M7_7, TIC20, TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20  gene TIC20  function Tic20 is believed to function as a component of the protein-conducting channel at the inner envelope membrane. Genes AT1G04940 and AT1G04945 were switched for the TAIR7 genome release to give consistency with MIPs annotation.  go_component membrane|GO:0016020|11152613|ISS  product TIC20 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20)  note TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20 (TIC20); LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Chloroplast protein import component Tic20 (InterPro:IPR005691); BEST Arabidopsis thaliana protein match is: tic20-IV (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20-IV) (TAIR:AT4G03320.1); Has 210 Blast hits to 209 proteins in 59 species: Archae - 0; Bacteria - 86; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT1G04940.1p  transcript_id AT1G04940.1  protein_id AT1G04940.1p  transcript_id AT1G04940.1  
At1g04945	chr1:001400969	0.0	W/1400969-1401155,1401303-1401507,1401676-1401744,1401846-1401978,1402067-1402520,1402596-1402651	AT1G04945.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529); Has 296 Blast hits to 294 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 94; Plants - 29; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT1G04945.1p  transcript_id AT1G04945.1  protein_id AT1G04945.1p  transcript_id AT1G04945.1  
At1g04945	chr1:001400969	0.0	W/1400969-1401155,1401303-1401507,1401676-1401744,1401846-1401978,1402067-1402651	AT1G04945.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529); Has 296 Blast hits to 294 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 94; Plants - 29; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT1G04945.2p  transcript_id AT1G04945.2  protein_id AT1G04945.2p  transcript_id AT1G04945.2  
At1g04950	chr1:001407059	0.0	C/1407059-1407184,1406872-1406958,1406541-1406642,1406339-1406447,1405957-1406057,1405743-1405880,1405560-1405655,1405110-1405234,1404617-1404749,1404201-1404326,1403606-1404112	AT1G04950.1  CDS  gene_syn ATTAF6, F13M7.6, F13M7_6, TAF6, TAFII59, TATA BOX ASSOCIATED FACTOR II 59, TBP-ASSOCIATED FACTOR 6  gene TAF6  function Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6. Mutants are embryo lethal and transmission of the mutant allele through the male gametophyte is significantly reduced. This is due to reduced pollen tube growth of the mutant.  go_component nucleus|GO:0005634||IEA  go_function DNA binding|GO:0003677||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  go_function transcription initiation factor activity|GO:0016986||IEA  go_component nucleus|GO:0005634||ISS  go_process transcription initiation|GO:0006352||ISS  go_process pollen tube growth|GO:0009860|16039640|IMP  go_function transcription initiation factor activity|GO:0016986||ISS  product TAF6 (TBP-ASSOCIATED FACTOR 6); DNA binding / RNA polymerase II transcription factor/ transcription initiation factor  note TBP-ASSOCIATED FACTOR 6 (TAF6); FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity, DNA binding; INVOLVED IN: pollen tube growth, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1546 (InterPro:IPR011442), Histone-fold (InterPro:IPR009072), TATA box binding protein associated factor (TAF) (InterPro:IPR004823); BEST Arabidopsis thaliana protein match is: TAF6B4 (TBP-ASSOCIATED FACTOR 6B4); DNA binding / RNA polymerase II transcription factor/ transcription initiation factor (TAIR:AT1G54360.4); Has 371 Blast hits to 367 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 182; Fungi - 92; Plants - 42; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT1G04950.1p  transcript_id AT1G04950.1  protein_id AT1G04950.1p  transcript_id AT1G04950.1  
At1g04950	chr1:001407059	0.0	C/1407059-1407184,1406872-1406958,1406541-1406642,1406339-1406447,1405957-1406057,1405743-1405880,1405560-1405655,1405110-1405234,1404617-1404749,1404201-1404326,1403606-1404112	AT1G04950.2  CDS  gene_syn ATTAF6, F13M7.6, F13M7_6, TAF6, TAFII59, TATA BOX ASSOCIATED FACTOR II 59, TBP-ASSOCIATED FACTOR 6  gene TAF6  function Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6. Mutants are embryo lethal and transmission of the mutant allele through the male gametophyte is significantly reduced. This is due to reduced pollen tube growth of the mutant.  go_component nucleus|GO:0005634||IEA  go_function DNA binding|GO:0003677||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  go_function transcription initiation factor activity|GO:0016986||IEA  go_component nucleus|GO:0005634||ISS  go_process transcription initiation|GO:0006352||ISS  go_process pollen tube growth|GO:0009860|16039640|IMP  go_function transcription initiation factor activity|GO:0016986||ISS  product TAF6 (TBP-ASSOCIATED FACTOR 6); DNA binding / RNA polymerase II transcription factor/ transcription initiation factor  note TATA BOX ASSOCIATED FACTOR II 59 (TAFII59); FUNCTIONS IN: RNA polymerase II transcription factor activity, DNA binding, transcription initiation factor activity; INVOLVED IN: pollen tube growth, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1546 (InterPro:IPR011442), Histone-fold (InterPro:IPR009072), TATA box binding protein associated factor (TAF) (InterPro:IPR004823); BEST Arabidopsis thaliana protein match is: TAF6B4 (TBP-ASSOCIATED FACTOR 6B4); DNA binding / RNA polymerase II transcription factor/ transcription initiation factor (TAIR:AT1G54360.4); Has 371 Blast hits to 367 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 182; Fungi - 92; Plants - 42; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT1G04950.2p  transcript_id AT1G04950.2  protein_id AT1G04950.2p  transcript_id AT1G04950.2  
At1g04950	chr1:001407059	0.0	C/1407059-1407184,1406872-1406958,1406541-1406642,1406339-1406447,1405957-1406057,1405743-1405880,1405560-1405655,1405110-1405234,1404617-1404749,1404201-1404326,1403606-1404112	AT1G04950.3  CDS  gene_syn ATTAF6, F13M7.6, F13M7_6, TAF6, TAFII59, TATA BOX ASSOCIATED FACTOR II 59, TBP-ASSOCIATED FACTOR 6  gene TAF6  function Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6. Mutants are embryo lethal and transmission of the mutant allele through the male gametophyte is significantly reduced. This is due to reduced pollen tube growth of the mutant.  go_component nucleus|GO:0005634||IEA  go_function DNA binding|GO:0003677||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  go_function transcription initiation factor activity|GO:0016986||IEA  go_component nucleus|GO:0005634||ISS  go_process transcription initiation|GO:0006352||ISS  go_process pollen tube growth|GO:0009860|16039640|IMP  go_function transcription initiation factor activity|GO:0016986||ISS  product TAF6 (TBP-ASSOCIATED FACTOR 6); DNA binding / RNA polymerase II transcription factor/ transcription initiation factor  note TATA BOX ASSOCIATED FACTOR II 59 (TAFII59); FUNCTIONS IN: RNA polymerase II transcription factor activity, DNA binding, transcription initiation factor activity; INVOLVED IN: pollen tube growth, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1546 (InterPro:IPR011442), Histone-fold (InterPro:IPR009072), TATA box binding protein associated factor (TAF) (InterPro:IPR004823); BEST Arabidopsis thaliana protein match is: TAF6B4 (TBP-ASSOCIATED FACTOR 6B4); DNA binding / RNA polymerase II transcription factor/ transcription initiation factor (TAIR:AT1G54360.4); Has 371 Blast hits to 367 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 182; Fungi - 92; Plants - 42; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT1G04950.3p  transcript_id AT1G04950.3  protein_id AT1G04950.3p  transcript_id AT1G04950.3  
At1g04960	chr1:001410185	0.0	C/1410185-1410424,1409952-1410033,1409756-1409823,1409528-1409629,1409352-1409441,1408931-1409005,1408797-1408829,1408617-1408694,1408458-1408514,1408021-1408200	AT1G04960.2  CDS  gene_syn F13M7.5, F13M7_5  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458); BEST Arabidopsis thaliana protein match is: bZIP family transcription factor (TAIR:AT1G27000.1); Has 95 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G04960.2p  transcript_id AT1G04960.2  protein_id AT1G04960.2p  transcript_id AT1G04960.2  
At1g04960	chr1:001410619	0.0	C/1410619-1410673,1410185-1410318,1409952-1410033,1409756-1409823,1409528-1409629,1409352-1409441,1408931-1409005,1408797-1408829,1408617-1408694,1408458-1408514,1408021-1408200	AT1G04960.1  CDS  gene_syn F13M7.5, F13M7_5  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458); BEST Arabidopsis thaliana protein match is: bZIP family transcription factor (TAIR:AT1G27000.1); Has 95 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G04960.1p  transcript_id AT1G04960.1  protein_id AT1G04960.1p  transcript_id AT1G04960.1  
At1g04970	chr1:001411216	0.0	W/1411216-1411623,1411915-1412054,1412160-1412511,1412656-1412904,1413017-1413142,1413240-1413431	AT1G04970.1  CDS  gene_syn F13M7.4, F13M7_4  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_function lipid binding|GO:0008289||IEA  go_process biological_process|GO:0008150||ND  go_function lipid binding|GO:0008289||ISS  product lipid-binding serum glycoprotein family protein  note lipid-binding serum glycoprotein family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Bactericidal permeability-increasing protein, alpha/beta domain (InterPro:IPR017943), Lipid-binding serum glycoprotein, N-terminal (InterPro:IPR017942), Lipid-binding serum glycoprotein, C-terminal (InterPro:IPR001124); BEST Arabidopsis thaliana protein match is: lipid-binding serum glycoprotein family protein (TAIR:AT3G20270.2); Has 354 Blast hits to 349 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 309; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT1G04970.1p  transcript_id AT1G04970.1  protein_id AT1G04970.1p  transcript_id AT1G04970.1  
At1g04970	chr1:001411924	0.0	W/1411924-1412054,1412160-1412511,1412656-1412904,1413017-1413142,1413240-1413431	AT1G04970.2  CDS  gene_syn F13M7.4, F13M7_4  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_function lipid binding|GO:0008289||IEA  go_process biological_process|GO:0008150||ND  go_function lipid binding|GO:0008289||ISS  product lipid-binding serum glycoprotein family protein  note lipid-binding serum glycoprotein family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Bactericidal permeability-increasing protein, alpha/beta domain (InterPro:IPR017943), Lipid-binding serum glycoprotein, N-terminal (InterPro:IPR017942), Lipid-binding serum glycoprotein, C-terminal (InterPro:IPR001124); BEST Arabidopsis thaliana protein match is: lipid-binding serum glycoprotein family protein (TAIR:AT3G20270.2); Has 311 Blast hits to 306 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 266; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT1G04970.2p  transcript_id AT1G04970.2  protein_id AT1G04970.2p  transcript_id AT1G04970.2  
At1g04980	chr1:001415986	0.0	C/1415986-1416120,1415675-1415833,1415450-1415563,1415197-1415375,1414993-1415092,1414646-1414822,1414417-1414562,1414156-1414302,1413869-1414055	AT1G04980.1  CDS  gene_syn ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, ATPDI10, ATPDIL2-2, F13M7.3, F13M7_3, PDI-LIKE 2-2, PDI10, PROTEIN DISULFIDE ISOMERASE  gene ATPDIL2-2  function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). AtIRE1-2 does not appear to be required for this response, but the atbzip60 mutant has a diminished response.  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process response to endoplasmic reticulum stress|GO:0034976|18574595|IEP  go_function protein disulfide isomerase activity|GO:0003756|18574595|ISS  product ATPDIL2-2 (PDI-LIKE 2-2); protein disulfide isomerase  note PDI-LIKE 2-2 (ATPDIL2-2); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: response to endoplasmic reticulum stress; LOCATED IN: plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Disulphide isomerase (InterPro:IPR005788), Thioredoxin fold (InterPro:IPR012335), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATPDIL2-3 (PDI-LIKE 2-3); protein disulfide isomerase (TAIR:AT2G32920.1); Has 25085 Blast hits to 12745 proteins in 1689 species: Archae - 232; Bacteria - 9968; Metazoa - 5140; Fungi - 1394; Plants - 1648; Viruses - 34; Other Eukaryotes - 6669 (source: NCBI BLink).  protein_id AT1G04980.1p  transcript_id AT1G04980.1  protein_id AT1G04980.1p  transcript_id AT1G04980.1  
At1g04985	chr1:001418175	0.0	C/1418175-1418291,1417974-1418046,1417326-1417390,1416869-1416978,1416563-1416779	AT1G04985.1  CDS  gene_syn F13M7.2, F13M7_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G04985.1p  transcript_id AT1G04985.1  protein_id AT1G04985.1p  transcript_id AT1G04985.1  
At1g04990	chr1:001421379	0.0	C/1421379-1421454,1420973-1421130,1420825-1420881,1420448-1420564,1420104-1420373,1419787-1420032,1419368-1419658	AT1G04990.1  CDS  gene_syn F13M7.1, F13M7_1  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc finger (CCCH-type) family protein  note zinc finger (CCCH-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: ZFN2 (ZINC FINGER NUCLEASE 2); DNA binding / nuclease/ nucleic acid binding (TAIR:AT2G32930.1); Has 1255 Blast hits to 799 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 533; Fungi - 168; Plants - 432; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT1G04990.1p  transcript_id AT1G04990.1  protein_id AT1G04990.1p  transcript_id AT1G04990.1  
At1g04990	chr1:001421379	0.0	C/1421379-1421454,1420973-1421130,1420825-1420881,1420448-1420564,1420104-1420373,1419787-1420032,1419368-1419658	AT1G04990.2  CDS  gene_syn F13M7.1, F13M7_1  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc finger (CCCH-type) family protein  note zinc finger (CCCH-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: ZFN2 (ZINC FINGER NUCLEASE 2); DNA binding / nuclease/ nucleic acid binding (TAIR:AT2G32930.1); Has 1255 Blast hits to 799 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 533; Fungi - 168; Plants - 432; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT1G04990.2p  transcript_id AT1G04990.2  protein_id AT1G04990.2p  transcript_id AT1G04990.2  
At1g05000	chr1:001425660	0.0	W/1425660-1425925,1426016-1426109,1426235-1426330,1427899-1427956,1428071-1428114,1428208-1428393	AT1G05000.2  CDS  gene_syn T7A14.14, T7A14_14  go_process dephosphorylation|GO:0016311||IEA  go_function protein tyrosine phosphatase activity|GO:0004725||IEA  go_function phosphatase activity|GO:0016791||IEA  go_component cellular_component|GO:0005575||ND  go_function phosphoprotein phosphatase activity|GO:0004721||ISS  product tyrosine specific protein phosphatase family protein  note tyrosine specific protein phosphatase family protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Protein-tyrosine phosphatase, SIW14-like (InterPro:IPR004861); BEST Arabidopsis thaliana protein match is: tyrosine specific protein phosphatase family protein (TAIR:AT2G32960.1).  protein_id AT1G05000.2p  transcript_id AT1G05000.2  protein_id AT1G05000.2p  transcript_id AT1G05000.2  
At1g05000	chr1:001425660	0.0	W/1425660-1425925,1426016-1426109,1427899-1427956,1428071-1428114,1428208-1428393	AT1G05000.1  CDS  gene_syn T7A14.14, T7A14_14  go_process dephosphorylation|GO:0016311||IEA  go_function protein tyrosine phosphatase activity|GO:0004725||IEA  go_function phosphatase activity|GO:0016791||IEA  go_component cellular_component|GO:0005575||ND  go_function phosphoprotein phosphatase activity|GO:0004721||ISS  product tyrosine specific protein phosphatase family protein  note tyrosine specific protein phosphatase family protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Protein-tyrosine phosphatase, SIW14-like (InterPro:IPR004861); BEST Arabidopsis thaliana protein match is: tyrosine specific protein phosphatase family protein (TAIR:AT2G32960.1); Has 450 Blast hits to 437 proteins in 100 species: Archae - 0; Bacteria - 32; Metazoa - 3; Fungi - 253; Plants - 83; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT1G05000.1p  transcript_id AT1G05000.1  protein_id AT1G05000.1p  transcript_id AT1G05000.1  
At1g05010	chr1:001432591	0.0	C/1432591-1432695,1432292-1432518,1431807-1432140,1431419-1431724	AT1G05010.1  CDS  gene_syn 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE, ACO4, EAT1, EFE, ETHYLENE-FORMING ENZYME, T7A14.12, T7A14_12, ethylene forming enzyme  gene EFE  function Encodes 1-aminocyclopropane-1-carboxylate oxidase  go_process response to fungus|GO:0009620|19220788|IEP  go_process ethylene biosynthetic process|GO:0009693|16311726|TAS  go_process ethylene biosynthetic process|GO:0009693|8262380|ISS  go_function 1-aminocyclopropane-1-carboxylate oxidase activity|GO:0009815|8262380|ISS  product EFE (ETHYLENE-FORMING ENZYME); 1-aminocyclopropane-1-carboxylate oxidase  note ETHYLENE-FORMING ENZYME (EFE); FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate oxidase activity; INVOLVED IN: response to fungus, ethylene biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: ACO2 (ACC OXIDASE 2); 1-aminocyclopropane-1-carboxylate oxidase (TAIR:AT1G62380.1); Has 5895 Blast hits to 5879 proteins in 688 species: Archae - 0; Bacteria - 721; Metazoa - 111; Fungi - 657; Plants - 3074; Viruses - 0; Other Eukaryotes - 1332 (source: NCBI BLink).  protein_id AT1G05010.1p  transcript_id AT1G05010.1  protein_id AT1G05010.1p  transcript_id AT1G05010.1  
At1g05020	chr1:001435384	0.0	C/1435384-1437345	AT1G05020.1  CDS  gene_syn T7A14.11, T7A14_11  go_component clathrin coat|GO:0030118||IEA  go_process clathrin coat assembly|GO:0048268||IEA  go_function phospholipid binding|GO:0005543||IEA  go_function phosphatidylinositol binding|GO:0005545||IEA  go_function clathrin binding|GO:0030276||IEA  go_function binding|GO:0005488||ISS  product epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related  note epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related; FUNCTIONS IN: phospholipid binding, clathrin binding, binding, phosphatidylinositol binding; INVOLVED IN: clathrin coat assembly; LOCATED IN: clathrin coat; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942), Clathrin adaptor, phosphoinositide-binding, GAT-like (InterPro:IPR014712); BEST Arabidopsis thaliana protein match is: epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (TAIR:AT4G02650.1); Has 434 Blast hits to 434 proteins in 61 species: Archae - 0; Bacteria - 2; Metazoa - 179; Fungi - 30; Plants - 211; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G05020.1p  transcript_id AT1G05020.1  protein_id AT1G05020.1p  transcript_id AT1G05020.1  
At1g05030	chr1:001441217	0.0	C/1441217-1441385,1441003-1441126,1440446-1440646,1440234-1440333,1439898-1440010,1439735-1439828,1439502-1439658,1439158-1439304,1438985-1439058,1438811-1438899,1438596-1438710,1438324-1438515	AT1G05030.1  CDS  gene_syn T7A14.10, T7A14_10  go_component mitochondrion|GO:0005739||IEA  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product hexose transporter, putative  note hexose transporter, putative; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: mitochondrion, integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Sugar/inositol transporter (InterPro:IPR003663), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: PGLCT (PLASTIDIC GLC TRANSLOCATOR); carbohydrate transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT5G16150.3); Has 20809 Blast hits to 20431 proteins in 1317 species: Archae - 299; Bacteria - 8398; Metazoa - 4650; Fungi - 4439; Plants - 1442; Viruses - 0; Other Eukaryotes - 1581 (source: NCBI BLink).  protein_id AT1G05030.1p  transcript_id AT1G05030.1  protein_id AT1G05030.1p  transcript_id AT1G05030.1  
At1g05040	chr1:001448141	0.0	C/1448141-1448448,1447891-1448056	AT1G05040.2  CDS  gene_syn T7A14.9, T7A14_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, flower; EXPRESSED DURING: 4 anthesis; Has 11 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05040.2p  transcript_id AT1G05040.2  protein_id AT1G05040.2p  transcript_id AT1G05040.2  
At1g05040	chr1:001448141	0.0	C/1448141-1448448,1447954-1448056,1447758-1447847	AT1G05040.1  CDS  gene_syn T7A14.9, T7A14_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, flower; EXPRESSED DURING: 4 anthesis; Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05040.1p  transcript_id AT1G05040.1  protein_id AT1G05040.1p  transcript_id AT1G05040.1  
At1g05055	chr1:001450577	0.0	C/1450577-1450852,1449713-1450174,1449237-1449615,1448913-1449061	AT1G05055.1  CDS  gene_syn AT1G05050, ATGTF2H2, GENERAL TRANSCRIPTION FACTOR IIH 2, GTF2H2  gene GTF2H2  function Member of transcription factor TFIIH complex. Involved in transcription and DNA repair and interacts with AtXPD.  go_component holo TFIIH complex|GO:0005675|16623910|IGI  go_process nucleotide-excision repair|GO:0006289|16623910|IGI  go_process regulation of transcription from RNA polymerase II promoter, global|GO:0006358|16623910|IGI  go_function general RNA polymerase II transcription factor activity|GO:0016251|16623910|IGI  product GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2); general RNA polymerase II transcription factor  note GENERAL TRANSCRIPTION FACTOR IIH 2 (GTF2H2); FUNCTIONS IN: general RNA polymerase II transcription factor activity; INVOLVED IN: regulation of transcription from RNA polymerase II promoter, global, nucleotide-excision repair; LOCATED IN: holo TFIIH complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ssl1-like (InterPro:IPR007198), TFIIH basal transcription factor complex, subunit SSL1 (InterPro:IPR012170), Zinc finger, RING-type (InterPro:IPR001841), TFIIH C1-like, C-terminal (InterPro:IPR004595), von Willebrand factor, type A (InterPro:IPR002035); Has 355 Blast hits to 347 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 162; Fungi - 101; Plants - 21; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT1G05055.1p  transcript_id AT1G05055.1  protein_id AT1G05055.1p  transcript_id AT1G05055.1  
At1g05060	chr1:001452509	0.0	C/1452509-1452858,1452295-1452419,1451665-1451756,1451451-1451537,1451255-1451362	AT1G05060.1  CDS  gene_syn T7A14.7, T7A14_7  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 15 Blast hits to 15 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05060.1p  transcript_id AT1G05060.1  protein_id AT1G05060.1p  transcript_id AT1G05060.1  
At1g05061	chr1:001453216	0.0	C/1453216-1454260	AT1G05061.1  pseudogenic_transcript  pseudo  function Pseudogene of AT2G32630; pentatricopeptide (PPR) repeat-containing protein  
At1g05065	chr1:001454969	0.0	C/1454969-1455220	AT1G05065.1  CDS  gene_syn CLAVATA3/ESR-RELATED 20, CLE20  gene CLE20  function Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.  go_component apoplast|GO:0048046|11457943|RCA  go_process signal transduction|GO:0007165||ISS  go_function receptor binding|GO:0005102||ISS  go_function protein binding|GO:0005515|11457943|ISS  product CLE20 (CLAVATA3/ESR-RELATED 20); protein binding / receptor binding  note CLAVATA3/ESR-RELATED 20 (CLE20); FUNCTIONS IN: protein binding, receptor binding; INVOLVED IN: signal transduction; LOCATED IN: apoplast; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05065.1p  transcript_id AT1G05065.1  protein_id AT1G05065.1p  transcript_id AT1G05065.1  
At1g05070	chr1:001458348	0.0	C/1458348-1458531,1457618-1457641,1457172-1457518	AT1G05070.1  CDS  gene_syn T7A14.6, T7A14_6  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1068 (InterPro:IPR010471); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32580.1); Has 55 Blast hits to 55 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G05070.1p  transcript_id AT1G05070.1  protein_id AT1G05070.1p  transcript_id AT1G05070.1  
At1g05080	chr1:001459091	0.0	W/1459091-1459978,1460063-1460197,1460283-1460579	AT1G05080.1  CDS  gene_syn T7A14.5, T7A14_5  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G22000.1); Has 1180 Blast hits to 1150 proteins in 9 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1178; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05080.1p  transcript_id AT1G05080.1  protein_id AT1G05080.1p  transcript_id AT1G05080.1  
At1g05085	chr1:001460988	0.0	W/1460988-1461125,1461215-1461264,1461395-1461552,1461642-1461670	AT1G05085.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05085.1p  transcript_id AT1G05085.1  protein_id AT1G05085.1p  transcript_id AT1G05085.1  
At1g05090	chr1:001463202	0.0	W/1463202-1463528,1463649-1464090,1464148-1465324,1465448-1465622	AT1G05090.1  CDS  gene_syn T7A14.3, T7A14_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product dentin sialophosphoprotein-related  note dentin sialophosphoprotein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage; BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT4G20720.1); Has 3317 Blast hits to 1175 proteins in 175 species: Archae - 2; Bacteria - 2415; Metazoa - 347; Fungi - 137; Plants - 84; Viruses - 1; Other Eukaryotes - 331 (source: NCBI BLink).  protein_id AT1G05090.1p  transcript_id AT1G05090.1  protein_id AT1G05090.1p  transcript_id AT1G05090.1  
At1g05100	chr1:001469679	0.0	W/1469679-1470698	AT1G05100.1  CDS  gene_syn MAPKKK18, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 18, T7A14.2, T7A14_2  gene MAPKKK18  function member of MEKK subfamily  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product MAPKKK18; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note MAPKKK18; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: MAPKKK17; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT2G32510.1); Has 87138 Blast hits to 86246 proteins in 3138 species: Archae - 46; Bacteria - 7335; Metazoa - 38577; Fungi - 7779; Plants - 17445; Viruses - 444; Other Eukaryotes - 15512 (source: NCBI BLink).  protein_id AT1G05100.1p  transcript_id AT1G05100.1  protein_id AT1G05100.1p  transcript_id AT1G05100.1  
At1g05120	chr1:001476022	0.0	C/1476022-1476067,1475631-1475723,1474596-1475539,1474253-1474375,1474095-1474168,1473921-1473984,1473671-1473817,1473394-1473479,1473238-1473307,1473009-1473131,1472603-1472833,1472373-1472477,1472130-1472282,1471948-1472036,1471780-1471860,1471624-1471696	AT1G05120.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function DNA binding|GO:0003677||ISS  go_function ATP binding|GO:0005524||ISS  product SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein  note SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; FUNCTIONS IN: in 6 functions; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: DNA repair protein, putative (TAIR:AT1G02670.1); Has 19621 Blast hits to 9987 proteins in 900 species: Archae - 87; Bacteria - 4298; Metazoa - 5750; Fungi - 4385; Plants - 1343; Viruses - 172; Other Eukaryotes - 3586 (source: NCBI BLink).  protein_id AT1G05120.1p  transcript_id AT1G05120.1  protein_id AT1G05120.1p  transcript_id AT1G05120.1  
At1g05135	chr1:001477500	0.0	C/1477500-1478821	AT1G05135.1  pseudogenic_transcript  pseudo  function pseudogene of unknown protein  note expressed protein, isoform contains a non-consensus TG acceptor site at intron.  
At1g05136	chr1:001478923	0.0	W/1478923-1479063	AT1G05136.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G05136.1p  transcript_id AT1G05136.1  protein_id AT1G05136.1p  transcript_id AT1G05136.1  
At1g05140	chr1:001482681	0.0	W/1482681-1484006	AT1G05140.1  CDS  gene_syn YUP8H12.25, YUP8H12_25  go_component chloroplast|GO:0009507|18431481|IDA  go_process proteolysis|GO:0006508||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_function protein binding|GO:0005515||IEA  go_component plastid|GO:0009536|10891285|ISS  go_process proteolysis|GO:0006508||ISS  go_function metalloendopeptidase activity|GO:0004222||ISS  product membrane-associated zinc metalloprotease, putative  note membrane-associated zinc metalloprotease, putative; FUNCTIONS IN: protein binding, metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M50 (InterPro:IPR008915), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase M50, putative membrane-associated zinc metallopeptidase (InterPro:IPR004387); BEST Arabidopsis thaliana protein match is: membrane-associated zinc metalloprotease, putative (TAIR:AT2G32480.1); Has 6877 Blast hits to 5459 proteins in 1201 species: Archae - 28; Bacteria - 3634; Metazoa - 12; Fungi - 4; Plants - 40; Viruses - 0; Other Eukaryotes - 3159 (source: NCBI BLink).  protein_id AT1G05140.1p  transcript_id AT1G05140.1  protein_id AT1G05140.1p  transcript_id AT1G05140.1  
At1g05150	chr1:001484280	0.0	C/1484280-1486706	AT1G05150.1  CDS  gene_syn YUP8H12.24, YUP8H12_24  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: binding, zinc ion binding, calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), EF hand (InterPro:IPR018248), Tetratricopeptide TPR2 (InterPro:IPR013105), EF-HAND 2 (InterPro:IPR018249), Tetratricopeptide region (InterPro:IPR013026), Zinc finger, ZZ-type (InterPro:IPR000433); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT2G32450.1); Has 27369 Blast hits to 12594 proteins in 993 species: Archae - 1214; Bacteria - 11971; Metazoa - 3725; Fungi - 450; Plants - 518; Viruses - 0; Other Eukaryotes - 9491 (source: NCBI BLink).  protein_id AT1G05150.1p  transcript_id AT1G05150.1  protein_id AT1G05150.1p  transcript_id AT1G05150.1  
At1g05160	chr1:001489590	0.0	C/1489590-1489828,1488909-1489386,1488561-1488824,1488390-1488479,1488220-1488298,1488019-1488125,1487812-1487936,1487640-1487730	AT1G05160.1  CDS  gene_syn ATKAO1, CYP88A3, CYTOCHROME P450 88 A3, ENT-KAURENOIC ACID OXYDASE 1, KAO1, YUP8H12.23, YUP8H12_23  gene CYP88A3  function Encodes an ent-kaurenoic acid hydroxylase, a member of the CYP88A cytochrome p450 family.  go_component endoplasmic reticulum|GO:0005783|11722763|IDA  go_process gibberellin biosynthetic process|GO:0009686|15923331|TAS  go_function oxygen binding|GO:0019825|11172076|ISS  go_function ent-kaurenoate oxidase activity|GO:0051777|11172076|IDA  product CYP88A3 (CYTOCHROME P450 88 A3); ent-kaurenoate oxidase/ oxygen binding  note CYTOCHROME P450 88 A3 (CYP88A3); FUNCTIONS IN: ent-kaurenoate oxidase activity, oxygen binding; INVOLVED IN: gibberellin biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450, B-class (InterPro:IPR002397), Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: KAO2 (ENT-KAURENOIC ACID HYDROXYLASE 2); ent-kaurenoate oxidase/ oxygen binding (TAIR:AT2G32440.1); Has 25273 Blast hits to 25227 proteins in 1332 species: Archae - 51; Bacteria - 4689; Metazoa - 9924; Fungi - 3918; Plants - 4810; Viruses - 6; Other Eukaryotes - 1875 (source: NCBI BLink).  protein_id AT1G05160.1p  transcript_id AT1G05160.1  protein_id AT1G05160.1p  transcript_id AT1G05160.1  
At1g05170	chr1:001493822	0.0	C/1493822-1493931,1493495-1493591,1493328-1493392,1493029-1493240,1492889-1492952,1492733-1492805,1492528-1492648,1492336-1492423,1492136-1492261,1491940-1492049,1491460-1491608	AT1G05170.1  CDS  gene_syn YUP8H12.22, YUP8H12_22  go_component membrane|GO:0016020||IEA  go_process protein amino acid glycosylation|GO:0006486||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product galactosyltransferase family protein  note galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: galactosyltransferase family protein (TAIR:AT2G32430.1); Has 936 Blast hits to 933 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 606; Fungi - 0; Plants - 319; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G05170.1p  transcript_id AT1G05170.1  protein_id AT1G05170.1p  transcript_id AT1G05170.1  
At1g05170	chr1:001493822	0.0	C/1493822-1493931,1493495-1493591,1493328-1493401,1493029-1493240,1492889-1492952,1492733-1492805,1492528-1492648,1492336-1492423,1492136-1492261,1491940-1492049,1491460-1491608	AT1G05170.2  CDS  gene_syn YUP8H12.22, YUP8H12_22  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process protein amino acid glycosylation|GO:0006486||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product galactosyltransferase family protein  note galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: galactosyltransferase family protein (TAIR:AT2G32430.1); Has 928 Blast hits to 924 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 597; Fungi - 0; Plants - 320; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G05170.2p  transcript_id AT1G05170.2  protein_id AT1G05170.2p  transcript_id AT1G05170.2  
At1g05180	chr1:001501425	0.0	C/1501425-1501469,1501289-1501330,1501167-1501190,1500804-1500914,1500600-1500679,1500332-1500485,1500156-1500249,1499891-1499979,1499706-1499779,1499456-1499618,1499229-1499314,1498836-1498919,1498524-1498746	AT1G05180.3  CDS  gene_syn AUXIN RESISTANT 1, AUXIN RESISTANT PROTEIN 1, AXR1, YUP8H12.21, YUP8H12_21  gene AXR1  function Encodes a subunit of the RUB1 activating enzyme that regulates the protein degradation activity of Skp1-Cullin-Fbox complexes, primarily, but not exclusively, affecting auxin responses. Acts alongside AS1 to exclude BP expression from leaves.  go_component nucleus|GO:0005634|9624055|IEP  go_process DNA repair|GO:0006281|18434413|IMP  go_process response to water deprivation|GO:0009414|8979397|IMP  go_process auxin mediated signaling pathway|GO:0009734|7658471|IMP  go_process leaf morphogenesis|GO:0009965|16971475|IGI  go_process auxin homeostasis|GO:0010252|17655650|NAS  go_process protein ubiquitination|GO:0016567|17655650|IGI  go_function small protein activating enzyme activity|GO:0008641|9624055|IDA  go_function small protein activating enzyme activity|GO:0008641||ISS  product AXR1 (AUXIN RESISTANT 1); small protein activating enzyme  note AUXIN RESISTANT 1 (AXR1); FUNCTIONS IN: small protein activating enzyme activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: AXL (AXR1-LIKE); binding / catalytic (TAIR:AT2G32410.1); Has 362 Blast hits to 358 proteins in 128 species: Archae - 0; Bacteria - 0; Metazoa - 169; Fungi - 98; Plants - 62; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT1G05180.3p  transcript_id AT1G05180.3  protein_id AT1G05180.3p  transcript_id AT1G05180.3  
At1g05180	chr1:001501425	0.0	C/1501425-1501469,1501289-1501330,1501167-1501190,1500804-1500914,1500600-1500679,1500332-1500485,1500156-1500249,1499891-1499979,1499706-1499779,1499456-1499618,1499229-1499314,1498836-1498919,1498566-1498746,1498357-1498440	AT1G05180.2  CDS  gene_syn AUXIN RESISTANT 1, AUXIN RESISTANT PROTEIN 1, AXR1, YUP8H12.21, YUP8H12_21  gene AXR1  function Encodes a subunit of the RUB1 activating enzyme that regulates the protein degradation activity of Skp1-Cullin-Fbox complexes, primarily, but not exclusively, affecting auxin responses. Acts alongside AS1 to exclude BP expression from leaves.  go_component nucleus|GO:0005634|9624055|IEP  go_process DNA repair|GO:0006281|18434413|IMP  go_process response to water deprivation|GO:0009414|8979397|IMP  go_process auxin mediated signaling pathway|GO:0009734|7658471|IMP  go_process leaf morphogenesis|GO:0009965|16971475|IGI  go_process auxin homeostasis|GO:0010252|17655650|NAS  go_process protein ubiquitination|GO:0016567|17655650|IGI  go_function small protein activating enzyme activity|GO:0008641|9624055|IDA  go_function small protein activating enzyme activity|GO:0008641||ISS  product AXR1 (AUXIN RESISTANT 1); small protein activating enzyme  note AUXIN RESISTANT 1 (AXR1); FUNCTIONS IN: small protein activating enzyme activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: AXL (AXR1-LIKE); binding / catalytic (TAIR:AT2G32410.1); Has 474 Blast hits to 468 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 247; Fungi - 100; Plants - 83; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT1G05180.2p  transcript_id AT1G05180.2  protein_id AT1G05180.2p  transcript_id AT1G05180.2  
At1g05180	chr1:001501690	0.0	C/1501690-1501775,1501425-1501597,1501167-1501330,1500804-1500914,1500600-1500679,1500332-1500485,1500156-1500249,1499891-1499979,1499706-1499779,1499456-1499618,1499229-1499314,1498836-1498919,1498566-1498746,1498357-1498440	AT1G05180.1  CDS  gene_syn AUXIN RESISTANT 1, AUXIN RESISTANT PROTEIN 1, AXR1, YUP8H12.21, YUP8H12_21  gene AXR1  function Encodes a subunit of the RUB1 activating enzyme that regulates the protein degradation activity of Skp1-Cullin-Fbox complexes, primarily, but not exclusively, affecting auxin responses. Acts alongside AS1 to exclude BP expression from leaves.  go_component nucleus|GO:0005634|9624055|IEP  go_process DNA repair|GO:0006281|18434413|IMP  go_process response to water deprivation|GO:0009414|8979397|IMP  go_process auxin mediated signaling pathway|GO:0009734|7658471|IMP  go_process leaf morphogenesis|GO:0009965|16971475|IGI  go_process auxin homeostasis|GO:0010252|17655650|NAS  go_process protein ubiquitination|GO:0016567|17655650|IGI  go_function small protein activating enzyme activity|GO:0008641|9624055|IDA  go_function small protein activating enzyme activity|GO:0008641||ISS  product AXR1 (AUXIN RESISTANT 1); small protein activating enzyme  note AUXIN RESISTANT 1 (AXR1); FUNCTIONS IN: small protein activating enzyme activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594), Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: AXL (AXR1-LIKE); binding / catalytic (TAIR:AT2G32410.1); Has 4497 Blast hits to 4023 proteins in 826 species: Archae - 102; Bacteria - 1503; Metazoa - 1091; Fungi - 545; Plants - 256; Viruses - 0; Other Eukaryotes - 1000 (source: NCBI BLink).  protein_id AT1G05180.1p  transcript_id AT1G05180.1  protein_id AT1G05180.1p  transcript_id AT1G05180.1  
At1g05190	chr1:001503704	0.0	C/1503704-1503738,1502962-1503261,1502515-1502851	AT1G05190.1  CDS  gene_syn YUP8H12.20, YUP8H12_20, emb2394, embryo defective 2394  gene emb2394  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_process translation|GO:0006412||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function structural constituent of ribosome|GO:0003735||ISS  product emb2394 (embryo defective 2394); structural constituent of ribosome  note embryo defective 2394 (emb2394); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: embryonic development ending in seed dormancy, translation; LOCATED IN: chloroplast stroma, chloroplast, large ribosomal subunit, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L6 (InterPro:IPR000702), Ribosomal protein L6, conserved site-1 (InterPro:IPR002358); BEST Arabidopsis thaliana protein match is: ribosomal protein L6 family protein (TAIR:AT2G18400.1); Has 5749 Blast hits to 5749 proteins in 1580 species: Archae - 150; Bacteria - 2981; Metazoa - 10; Fungi - 116; Plants - 74; Viruses - 0; Other Eukaryotes - 2418 (source: NCBI BLink).  protein_id AT1G05190.1p  transcript_id AT1G05190.1  protein_id AT1G05190.1p  transcript_id AT1G05190.1  
At1g05200	chr1:001505642	0.0	W/1505642-1505993,1506117-1507450,1507529-1507806,1507886-1507917,1508024-1508433,1508529-1509002	AT1G05200.1  CDS  gene_syn ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 3.4, ATGLR3.4, GLR3.4, GLUR3, GLUTAMATE RECEPTOR 3.4, LIGAND-GATED CHANNEL-LIKE PROTEIN PRECURSOR, YUP8H12.19, YUP8H12_19  gene ATGLR3.4  function member of Putative ligand-gated ion channel subunit family  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process cellular calcium ion homeostasis|GO:0006874|11379626|NAS  go_process response to light stimulus|GO:0009416|11379626|NAS  go_function intracellular ligand-gated ion channel activity|GO:0005217||ISS  product ATGLR3.4; intracellular ligand-gated ion channel  note ATGLR3.4; FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ionotropic glutamate receptor (InterPro:IPR001320), Glutamate receptor-related (InterPro:IPR015683), Extracellular ligand-binding receptor (InterPro:IPR001828), GPCR, family 3, gamma-aminobutyric acid receptor, type B (InterPro:IPR002455), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: ATGLR3.5 (GLUTAMATE RECEPTOR 3.5); intracellular ligand-gated ion channel (TAIR:AT2G32390.2); Has 5127 Blast hits to 5012 proteins in 418 species: Archae - 25; Bacteria - 894; Metazoa - 3648; Fungi - 0; Plants - 313; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).  protein_id AT1G05200.1p  transcript_id AT1G05200.1  protein_id AT1G05200.1p  transcript_id AT1G05200.1  
At1g05200	chr1:001505642	0.0	W/1505642-1505993,1506117-1507450,1507529-1507806,1507886-1507917,1508024-1508433,1508529-1509002	AT1G05200.2  CDS  gene_syn ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 3.4, ATGLR3.4, GLR3.4, GLUR3, GLUTAMATE RECEPTOR 3.4, LIGAND-GATED CHANNEL-LIKE PROTEIN PRECURSOR, YUP8H12.19, YUP8H12_19  gene ATGLR3.4  function member of Putative ligand-gated ion channel subunit family  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process cellular calcium ion homeostasis|GO:0006874|11379626|NAS  go_process response to light stimulus|GO:0009416|11379626|NAS  go_function intracellular ligand-gated ion channel activity|GO:0005217||ISS  product ATGLR3.4; intracellular ligand-gated ion channel  note ATGLR3.4; FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), GPCR, family 3, gamma-aminobutyric acid receptor, type B (InterPro:IPR002455), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: ATGLR3.5 (GLUTAMATE RECEPTOR 3.5); intracellular ligand-gated ion channel (TAIR:AT2G32390.2); Has 5127 Blast hits to 5012 proteins in 418 species: Archae - 25; Bacteria - 894; Metazoa - 3648; Fungi - 0; Plants - 313; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).  protein_id AT1G05200.2p  transcript_id AT1G05200.2  protein_id AT1G05200.2p  transcript_id AT1G05200.2  
At1g05205	chr1:001510139	0.0	C/1510139-1510249,1509692-1509771,1509352-1509436	AT1G05205.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 19 Blast hits to 19 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05205.1p  transcript_id AT1G05205.1  protein_id AT1G05205.1p  transcript_id AT1G05205.1  
At1g05210	chr1:001510469	0.0	W/1510469-1510792,1511303-1511485	AT1G05210.1  CDS  gene_syn YUP8H12.18, YUP8H12_18  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane protein 97, predicted (InterPro:IPR016964); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32380.1); Has 101 Blast hits to 101 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 9; Plants - 41; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G05210.1p  transcript_id AT1G05210.1  protein_id AT1G05210.1p  transcript_id AT1G05210.1  
At1g05220	chr1:001511943	0.0	W/1511943-1512263,1512495-1512656	AT1G05220.1  CDS  gene_syn YUP8H12.17, YUP8H12_17  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Transmembrane protein 97, predicted (InterPro:IPR016964); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05210.1); Has 103 Blast hits to 103 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 50; Fungi - 10; Plants - 41; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G05220.1p  transcript_id AT1G05220.1  protein_id AT1G05220.1p  transcript_id AT1G05220.1  
At1g05220	chr1:001511943	0.0	W/1511943-1512263,1512495-1512656	AT1G05220.2  CDS  gene_syn YUP8H12.17, YUP8H12_17  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Transmembrane protein 97, predicted (InterPro:IPR016964); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05210.1); Has 103 Blast hits to 103 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 50; Fungi - 10; Plants - 41; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G05220.2p  transcript_id AT1G05220.2  protein_id AT1G05220.2p  transcript_id AT1G05220.2  
At1g05230	chr1:001516783	0.0	C/1516783-1517024,1516587-1516704,1515821-1516009,1515038-1515451,1514862-1514963,1514590-1514790,1514350-1514524,1513994-1514265,1513825-1513920,1513388-1513744	AT1G05230.1  CDS  gene_syn HDG2, HOMEODOMAIN GLABROUS 2, YUP8H12.16, YUP8H12_16  gene HDG2  function Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product HDG2 (HOMEODOMAIN GLABROUS 2); DNA binding / transcription factor  note HOMEODOMAIN GLABROUS 2 (HDG2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: PDF2 (PROTODERMAL FACTOR 2); DNA binding / transcription factor (TAIR:AT4G04890.1); Has 7135 Blast hits to 7078 proteins in 389 species: Archae - 0; Bacteria - 0; Metazoa - 5278; Fungi - 157; Plants - 1499; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink).  protein_id AT1G05230.1p  transcript_id AT1G05230.1  protein_id AT1G05230.1p  transcript_id AT1G05230.1  
At1g05230	chr1:001516783	0.0	C/1516783-1517024,1516587-1516704,1515821-1516009,1515038-1515451,1514862-1514963,1514590-1514790,1514350-1514524,1513994-1514265,1513825-1513920,1513388-1513744	AT1G05230.2  CDS  gene_syn HDG2, HOMEODOMAIN GLABROUS 2, YUP8H12.16, YUP8H12_16  gene HDG2  function Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product HDG2 (HOMEODOMAIN GLABROUS 2); DNA binding / transcription factor  note HOMEODOMAIN GLABROUS 2 (HDG2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: PDF2 (PROTODERMAL FACTOR 2); DNA binding / transcription factor (TAIR:AT4G04890.1); Has 7135 Blast hits to 7078 proteins in 389 species: Archae - 0; Bacteria - 0; Metazoa - 5278; Fungi - 157; Plants - 1499; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink).  protein_id AT1G05230.2p  transcript_id AT1G05230.2  protein_id AT1G05230.2p  transcript_id AT1G05230.2  
At1g05230	chr1:001516783	0.0	C/1516783-1517024,1516587-1516704,1515821-1516009,1515038-1515451,1514862-1514963,1514590-1514790,1514350-1514524,1513994-1514265,1513831-1513920,1513388-1513744	AT1G05230.3  CDS  gene_syn HDG2, HOMEODOMAIN GLABROUS 2, YUP8H12.16, YUP8H12_16  gene HDG2  function Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product HDG2 (HOMEODOMAIN GLABROUS 2); DNA binding / transcription factor  note HOMEODOMAIN GLABROUS 2 (HDG2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: PDF2 (PROTODERMAL FACTOR 2); DNA binding / transcription factor (TAIR:AT4G04890.1); Has 7111 Blast hits to 7056 proteins in 388 species: Archae - 0; Bacteria - 0; Metazoa - 5301; Fungi - 158; Plants - 1501; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).  protein_id AT1G05230.3p  transcript_id AT1G05230.3  protein_id AT1G05230.3p  transcript_id AT1G05230.3  
At1g05240	chr1:001521202	0.0	W/1521202-1521414,1521504-1521689,1521783-1521948,1522035-1522447	AT1G05240.1  CDS  gene_syn YUP8H12.15  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: plant-type cell wall; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT1G05250.1); Has 2736 Blast hits to 2721 proteins in 173 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 33; Plants - 2677; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT1G05240.1p  transcript_id AT1G05240.1  protein_id AT1G05240.1p  transcript_id AT1G05240.1  
At1g05250	chr1:001526957	0.0	C/1526957-1527169,1526682-1526867,1526423-1526588,1525924-1526336	AT1G05250.1  CDS  gene_syn YUP8H12.14, YUP8H12_14  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT1G05240.1); Has 2736 Blast hits to 2721 proteins in 173 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 33; Plants - 2677; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT1G05250.1p  transcript_id AT1G05250.1  protein_id AT1G05250.1p  transcript_id AT1G05250.1  
At1g05260	chr1:001529827	0.0	W/1529827-1530039,1530148-1530336,1530430-1530592,1530856-1531271	AT1G05260.1  CDS  gene_syn PEROXIDASE PRECURSOR, RARE COLD INDUCIBLE GENE 3, RCI3, RCI3A, YUP8H12.13, YUP8H12_13  gene RCI3  function Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature, RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but only in roots of light-grown seedlings.  go_component endoplasmic reticulum|GO:0005783|12366797|ISS  go_process response to desiccation|GO:0009269|12366797|IMP  go_process response to cold|GO:0009409|12366797|IEP  go_process hyperosmotic salinity response|GO:0042538|12366797|IMP  go_function peroxidase activity|GO:0004601|12366797|IDA  go_function peroxidase activity|GO:0004601||ISS  product RCI3 (RARE COLD INDUCIBLE GENE 3); peroxidase  note RARE COLD INDUCIBLE GENE 3 (RCI3); FUNCTIONS IN: peroxidase activity; INVOLVED IN: response to desiccation, hyperosmotic salinity response, response to cold; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase 30 (PER30) (P30) (PRXR9) (TAIR:AT3G21770.1); Has 2893 Blast hits to 2877 proteins in 200 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 48; Plants - 2805; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT1G05260.1p  transcript_id AT1G05260.1  protein_id AT1G05260.1p  transcript_id AT1G05260.1  
At1g05270	chr1:001533943	0.0	C/1533943-1534305,1533503-1533550,1533352-1533411,1532917-1533000,1532730-1532834,1532484-1532597,1532264-1532364,1532019-1532130,1531806-1531934	AT1G05270.1  CDS  gene_syn YUP8H12.12, YUP8H12_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product TraB family protein  note TraB family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pheromone shutdown-related, TraB (InterPro:IPR002816); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32340.1); Has 515 Blast hits to 497 proteins in 174 species: Archae - 89; Bacteria - 148; Metazoa - 111; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).  protein_id AT1G05270.1p  transcript_id AT1G05270.1  protein_id AT1G05270.1p  transcript_id AT1G05270.1  
At1g05280	chr1:001537011	0.0	C/1537011-1537414,1536297-1536708,1535975-1536211,1535585-1535887,1535444-1535473	AT1G05280.1  CDS  gene_syn YUP8H12.11, YUP8H12_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product fringe-related protein  note fringe-related protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: fringe-related protein (TAIR:AT4G15240.1); Has 314 Blast hits to 310 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 57; Fungi - 116; Plants - 128; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G05280.1p  transcript_id AT1G05280.1  protein_id AT1G05280.1p  transcript_id AT1G05280.1  
At1g05290	chr1:001540082	0.0	C/1540082-1540546,1539782-1539970,1539384-1539694,1539152-1539296	AT1G05290.1  CDS  gene_syn YUP8H12.10, YUP8H12_10  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: zinc finger (B-box type) family protein (TAIR:AT3G21880.1); Has 837 Blast hits to 829 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 810; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT1G05290.1p  transcript_id AT1G05290.1  protein_id AT1G05290.1p  transcript_id AT1G05290.1  
At1g05291	chr1:001542192	0.0	C/1542192-1542323,1541912-1542114,1541348-1541627	AT1G05291.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32280.1); Has 35 Blast hits to 35 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05291.1p  transcript_id AT1G05291.1  protein_id AT1G05291.1p  transcript_id AT1G05291.1  
At1g05300	chr1:001547083	0.0	C/1547083-1547709,1546161-1546337	AT1G05300.2  CDS  gene_syn YUP8H12.8, YUP8H12_8, ZINC TRANSPORTER 5 PRECURSOR, ZIP5  gene ZIP5  function member of Fe(II) transporter isolog family  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|ISS  go_process cation transport|GO:0006812||ISS  go_process response to zinc ion|GO:0010043|13129917|IEP  go_function cation transmembrane transporter activity|GO:0008324|11500563|ISS  go_function cation transmembrane transporter activity|GO:0008324||ISS  go_function metal ion transmembrane transporter activity|GO:0046873||ISS  product ZIP5; cation transmembrane transporter/ metal ion transmembrane transporter  note ZIP5; FUNCTIONS IN: cation transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: response to zinc ion, cation transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal and plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: ZIP3; zinc ion transmembrane transporter (TAIR:AT2G32270.1); Has 823 Blast hits to 738 proteins in 133 species: Archae - 0; Bacteria - 11; Metazoa - 56; Fungi - 385; Plants - 275; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT1G05300.2p  transcript_id AT1G05300.2  protein_id AT1G05300.2p  transcript_id AT1G05300.2  
At1g05300	chr1:001547083	0.0	C/1547083-1547709,1546188-1546337,1545258-1545563	AT1G05300.1  CDS  gene_syn YUP8H12.8, YUP8H12_8, ZINC TRANSPORTER 5 PRECURSOR, ZIP5  gene ZIP5  function member of Fe(II) transporter isolog family  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|ISS  go_process cation transport|GO:0006812||ISS  go_process response to zinc ion|GO:0010043|13129917|IEP  go_function cation transmembrane transporter activity|GO:0008324|11500563|ISS  go_function cation transmembrane transporter activity|GO:0008324||ISS  go_function metal ion transmembrane transporter activity|GO:0046873||ISS  product ZIP5; cation transmembrane transporter/ metal ion transmembrane transporter  note ZIP5; FUNCTIONS IN: cation transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: response to zinc ion, cation transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal and plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: ZIP3; zinc ion transmembrane transporter (TAIR:AT2G32270.1); Has 1415 Blast hits to 1336 proteins in 213 species: Archae - 0; Bacteria - 110; Metazoa - 433; Fungi - 396; Plants - 310; Viruses - 0; Other Eukaryotes - 166 (source: NCBI BLink).  protein_id AT1G05300.1p  transcript_id AT1G05300.1  protein_id AT1G05300.1p  transcript_id AT1G05300.1  
At1g05310	chr1:001552049	0.0	C/1552049-1552434,1551799-1551970,1551212-1551418,1550861-1551120,1550615-1550771	AT1G05310.1  CDS  gene_syn YUP8H12.7, YUP8H12_7  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT2G36710.1); Has 3380 Blast hits to 2212 proteins in 282 species: Archae - 5; Bacteria - 324; Metazoa - 1004; Fungi - 296; Plants - 988; Viruses - 6; Other Eukaryotes - 757 (source: NCBI BLink).  protein_id AT1G05310.1p  transcript_id AT1G05310.1  protein_id AT1G05310.1p  transcript_id AT1G05310.1  
At1g05320	chr1:001554856	0.0	W/1554856-1554900,1554991-1556586,1556658-1556867,1556945-1557079,1557176-1557328,1557425-1557658	AT1G05320.1  CDS  gene_syn YUP8H12.6, YUP8H12_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: fruit; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32240.1); Has 205658 Blast hits to 89336 proteins in 2499 species: Archae - 2336; Bacteria - 33619; Metazoa - 92986; Fungi - 14305; Plants - 7441; Viruses - 1151; Other Eukaryotes - 53820 (source: NCBI BLink).  protein_id AT1G05320.1p  transcript_id AT1G05320.1  protein_id AT1G05320.1p  transcript_id AT1G05320.1  
At1g05320	chr1:001554856	0.0	W/1554856-1554900,1554991-1556586,1556658-1556867,1556945-1557079,1557176-1557328,1557425-1557658	AT1G05320.2  CDS  gene_syn YUP8H12.6, YUP8H12_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: fruit; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32240.1); Has 205658 Blast hits to 89336 proteins in 2499 species: Archae - 2336; Bacteria - 33619; Metazoa - 92986; Fungi - 14305; Plants - 7441; Viruses - 1151; Other Eukaryotes - 53820 (source: NCBI BLink).  protein_id AT1G05320.2p  transcript_id AT1G05320.2  protein_id AT1G05320.2p  transcript_id AT1G05320.2  
At1g05320	chr1:001554856	0.0	W/1554856-1554900,1554991-1556586,1556658-1556867,1556945-1557079,1557176-1557328,1557425-1557658	AT1G05320.3  CDS  gene_syn YUP8H12.6, YUP8H12_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: fruit; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32240.1); Has 205658 Blast hits to 89336 proteins in 2499 species: Archae - 2336; Bacteria - 33619; Metazoa - 92986; Fungi - 14305; Plants - 7441; Viruses - 1151; Other Eukaryotes - 53820 (source: NCBI BLink).  protein_id AT1G05320.3p  transcript_id AT1G05320.3  protein_id AT1G05320.3p  transcript_id AT1G05320.3  
At1g05330	chr1:001558170	0.0	W/1558170-1558583	AT1G05330.1  CDS  gene_syn YUP8H12.5, YUP8H12_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, sepal; EXPRESSED DURING: petal differentiation and expansion stage; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05330.1p  transcript_id AT1G05330.1  protein_id AT1G05330.1p  transcript_id AT1G05330.1  
At1g05340	chr1:001559616	0.0	C/1559616-1559646,1559376-1559517,1559079-1559124	AT1G05340.1  CDS  gene_syn YUP8H12.4, YUP8H12_4  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32210.1); Has 122 Blast hits to 122 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 16; Plants - 106; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05340.1p  transcript_id AT1G05340.1  protein_id AT1G05340.1p  transcript_id AT1G05340.1  
At1g05350	chr1:001563925	0.0	C/1563925-1564005,1563582-1563650,1563390-1563503,1563165-1563293,1563012-1563080,1562578-1562733,1562369-1562405,1562205-1562287,1562080-1562121,1561953-1562027,1561744-1561818,1561537-1561623,1561313-1561431,1561143-1561195,1560891-1561039	AT1G05350.1  CDS  gene_syn YUP8H12.3, YUP8H12_3  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_function cofactor binding|GO:0048037||IEA  go_component cellular_component|GO:0005575||ND  go_function catalytic activity|GO:0003824||ISS  product thiF family protein  note thiF family protein; FUNCTIONS IN: binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, catalytic activity, cofactor binding; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594), Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: SAE2 (SUMO-ACTIVATING ENZYME 2); SUMO activating enzyme (TAIR:AT2G21470.2); Has 7901 Blast hits to 7756 proteins in 1322 species: Archae - 133; Bacteria - 4223; Metazoa - 801; Fungi - 447; Plants - 189; Viruses - 0; Other Eukaryotes - 2108 (source: NCBI BLink).  protein_id AT1G05350.1p  transcript_id AT1G05350.1  protein_id AT1G05350.1p  transcript_id AT1G05350.1  
At1g05360	chr1:001564816	0.0	W/1564816-1564861,1565152-1565363,1565622-1565700,1565818-1566105,1566342-1566490,1566612-1566728,1566826-1567005,1567099-1567278	AT1G05360.1  CDS  gene_syn YUP8H12.2, YUP8H12_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14950.1); Has 269 Blast hits to 262 proteins in 95 species: Archae - 0; Bacteria - 11; Metazoa - 157; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT1G05360.1p  transcript_id AT1G05360.1  protein_id AT1G05360.1p  transcript_id AT1G05360.1  
At1g05370	chr1:001572173	0.0	C/1572173-1572280,1571949-1572066,1571296-1571384,1571158-1571204,1570988-1571076,1570495-1570630,1570316-1570379,1569418-1570086	AT1G05370.1  CDS  gene_syn YUP8H12.1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, hypocotyl, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22410.1); Has 283 Blast hits to 283 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 127; Plants - 122; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G05370.1p  transcript_id AT1G05370.1  protein_id AT1G05370.1p  transcript_id AT1G05370.1  
At1g05380	chr1:001577231	0.0	W/1577231-1579195,1579314-1579440,1579534-1579619,1580030-1580268,1580625-1580711,1581184-1581283,1581378-1582190	AT1G05380.1  CDS  gene_syn T25N20.3, T25N20_3  go_component nucleus|GO:0005634|9836641|IC  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677|9836641|ISS  go_function DNA binding|GO:0003677||ISS  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: DNA binding / protein binding / zinc ion binding (TAIR:AT4G14920.1); Has 3573 Blast hits to 2987 proteins in 158 species: Archae - 3; Bacteria - 3; Metazoa - 2542; Fungi - 319; Plants - 377; Viruses - 0; Other Eukaryotes - 329 (source: NCBI BLink).  protein_id AT1G05380.1p  transcript_id AT1G05380.1  protein_id AT1G05380.1p  transcript_id AT1G05380.1  
At1g05380	chr1:001577231	0.0	W/1577231-1579195,1579314-1579440,1579534-1579619,1580030-1580268,1580625-1580711,1581184-1581283,1581378-1582190	AT1G05380.2  CDS  gene_syn T25N20.3, T25N20_3  go_component nucleus|GO:0005634|9836641|IC  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677|9836641|ISS  go_function DNA binding|GO:0003677||ISS  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: DNA binding / protein binding / zinc ion binding (TAIR:AT4G14920.1); Has 3573 Blast hits to 2987 proteins in 158 species: Archae - 3; Bacteria - 3; Metazoa - 2542; Fungi - 319; Plants - 377; Viruses - 0; Other Eukaryotes - 329 (source: NCBI BLink).  protein_id AT1G05380.2p  transcript_id AT1G05380.2  protein_id AT1G05380.2p  transcript_id AT1G05380.2  
At1g05385	chr1:001583570	0.0	C/1583570-1583648,1582965-1583347,1582747-1582884	AT1G05385.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product photosystem II 11 kDa protein-related  note photosystem II 11 kDa protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 166 Blast hits to 166 proteins in 42 species: Archae - 0; Bacteria - 59; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT1G05385.1p  transcript_id AT1G05385.1  protein_id AT1G05385.1p  transcript_id AT1G05385.1  
At1g05390	chr1:001583772	0.0	C/1583772-1583845	AT1G05390.1  tRNA  gene_syn 51807.TRNA-ASN-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asn (anticodon: GTT)  transcript_id AT1G05390.1  
At1g05400	chr1:001584746	0.0	W/1584746-1585060,1585161-1585244	AT1G05400.1  CDS  gene_syn T25N20.5, T25N20_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06810.1); Has 80 Blast hits to 76 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05400.1p  transcript_id AT1G05400.1  protein_id AT1G05400.1p  transcript_id AT1G05400.1  
At1g05400	chr1:001584746	0.0	W/1584746-1585060,1585161-1585244	AT1G05400.2  CDS  gene_syn T25N20.5, T25N20_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06810.1).  protein_id AT1G05400.2p  transcript_id AT1G05400.2  protein_id AT1G05400.2p  transcript_id AT1G05400.2  
At1g05410	chr1:001586908	0.0	C/1586908-1587268,1586158-1586723,1586030-1586090,1585504-1585931	AT1G05410.1  CDS  gene_syn T25N20.6, T25N20_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22520.1); Has 112 Blast hits to 109 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 8; Plants - 96; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G05410.1p  transcript_id AT1G05410.1  protein_id AT1G05410.1p  transcript_id AT1G05410.1  
At1g05410	chr1:001587206	0.0	C/1587206-1587268,1586908-1587124,1586158-1586723,1586030-1586090,1585504-1585931	AT1G05410.2  CDS  gene_syn T25N20.6, T25N20_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14840.1); Has 112 Blast hits to 109 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 8; Plants - 96; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G05410.2p  transcript_id AT1G05410.2  protein_id AT1G05410.2p  transcript_id AT1G05410.2  
At1g05420	chr1:001590073	0.0	W/1590073-1590753	AT1G05420.1  CDS  gene_syn ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ATOFP12, OFP12, OVATE FAMILY PROTEIN 12, T25N20.7, T25N20_7  gene OFP12  go_process biological_process|GO:0008150||ND  product OFP12 (OVATE FAMILY PROTEIN 12)  note OVATE FAMILY PROTEIN 12 (OFP12); INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623, plant (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16) (TAIR:AT2G32100.1); Has 175 Blast hits to 175 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 174; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05420.1p  transcript_id AT1G05420.1  protein_id AT1G05420.1p  transcript_id AT1G05420.1  
At1g05430	chr1:001595675	0.0	C/1595675-1595731,1595321-1595426,1595133-1595186,1594923-1595043,1594540-1594807,1594227-1594430	AT1G05430.1  CDS  gene_syn T25N20.8, T25N20_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 19 Blast hits to 19 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05430.1p  transcript_id AT1G05430.1  protein_id AT1G05430.1p  transcript_id AT1G05430.1  
At1g05440	chr1:001597133	0.0	C/1597133-1597843,1596903-1597052,1596374-1596667	AT1G05440.1  CDS  gene_syn T25N20.9, T25N20_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; Has 95 Blast hits to 95 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 63; Fungi - 4; Plants - 11; Viruses - 1; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G05440.1p  transcript_id AT1G05440.1  protein_id AT1G05440.1p  transcript_id AT1G05440.1  
At1g05450	chr1:001600004	0.0	W/1600004-1600334,1600507-1600533,1600642-1600701,1600809-1600862,1600941-1601086	AT1G05450.2  CDS  gene_syn T25N20.10, T25N20_10  function Encodes a Protease inhibitor/seed storage/LTP family protein  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product protease inhibitor/seed storage/lipid transfer protein (LTP)-related  note protease inhibitor/seed storage/lipid transfer protein (LTP)-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT3G22620.1); Has 727 Blast hits to 610 proteins in 90 species: Archae - 2; Bacteria - 62; Metazoa - 64; Fungi - 80; Plants - 373; Viruses - 24; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT1G05450.2p  transcript_id AT1G05450.2  protein_id AT1G05450.2p  transcript_id AT1G05450.2  
At1g05450	chr1:001600860	0.0	W/1600860-1600862,1600941-1601090	AT1G05450.1  CDS  gene_syn T25N20.10, T25N20_10  function Encodes a Protease inhibitor/seed storage/LTP family protein  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product protease inhibitor/seed storage/lipid transfer protein (LTP)-related  note protease inhibitor/seed storage/lipid transfer protein (LTP)-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05450.1p  transcript_id AT1G05450.1  protein_id AT1G05450.1p  transcript_id AT1G05450.1  
At1g05460	chr1:001603876	0.0	C/1603876-1604658,1603623-1603787,1602053-1603507,1601357-1601962	AT1G05460.1  CDS  gene_syn SDE3, SILENCING DEFECTIVE, T25N20.11, T25N20_11  gene SDE3  function Encodes a protein with similarity to RNA helicases. Mutants are defective in post-transcriptional gene silencing.  go_component cellular_component|GO:0005575||ND  go_process virus induced gene silencing|GO:0009616|11296239|IMP  go_function RNA helicase activity|GO:0003724|11296239|ISS  product SDE3 (SILENCING DEFECTIVE); RNA helicase  note SILENCING DEFECTIVE (SDE3); FUNCTIONS IN: RNA helicase activity; INVOLVED IN: virus induced gene silencing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: LBA1 (LOW-LEVEL BETA-AMYLASE 1); ATP binding / DNA binding / RNA helicase/ hydrolase (TAIR:AT5G47010.1); Has 6714 Blast hits to 5072 proteins in 715 species: Archae - 148; Bacteria - 1269; Metazoa - 1798; Fungi - 1052; Plants - 324; Viruses - 178; Other Eukaryotes - 1945 (source: NCBI BLink).  protein_id AT1G05460.1p  transcript_id AT1G05460.1  protein_id AT1G05460.1p  transcript_id AT1G05460.1  
At1g05470	chr1:001611262	0.0	C/1611262-1611291,1611074-1611161,1610854-1610925,1610674-1610761,1610486-1610590,1609602-1610397,1609316-1609509,1609099-1609207,1608868-1609016,1608558-1608780	AT1G05470.1  CDS  gene_syn COTYLEDON VASCULAR PATTERN 2, CVP2, T25N20.12, T25N20_12  gene CVP2  function Encodes an inositol polyphosphate 5  phosphatase (5PTase) that is required for the proper recruitment of cells into developing vascular tissue in leaves and cotyledons. It is most similar to Type I 5PTases that are known to cleave a phosphate from IP3 or IP4. cvp2 mutants have elevated levels of IP3 and are hypersensitive to ABA in seed germination assays.  go_component cellular_component|GO:0005575||ND  go_process auxin metabolic process|GO:0009850|10559439|IMP  go_process xylem and phloem pattern formation|GO:0010051|10559439|IMP  go_process response to abscisic acid stimulus|GO:0009737|15100402|IMP  go_process procambium histogenesis|GO:0010067|15100402|IMP  go_process leaf vascular tissue pattern formation|GO:0010305|15100402|IMP  go_process cotyledon vascular tissue pattern formation|GO:0010588|15100402|IMP  go_process inositol trisphosphate metabolic process|GO:0032957|15100402|IMP  go_process inositol phosphate dephosphorylation|GO:0046855|15100402|IMP  go_process inositol phosphate-mediated signaling|GO:0048016|15100402|IC  go_function hydrolase activity|GO:0016787||ISS  go_function inositol trisphosphate phosphatase activity|GO:0046030|15100402|IMP  product CVP2 (COTYLEDON VASCULAR PATTERN 2); hydrolase/ inositol trisphosphate phosphatase  note COTYLEDON VASCULAR PATTERN 2 (CVP2); FUNCTIONS IN: hydrolase activity, inositol trisphosphate phosphatase activity; INVOLVED IN: in 9 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein (TAIR:AT2G32010.1); Has 2340 Blast hits to 1521 proteins in 172 species: Archae - 0; Bacteria - 29; Metazoa - 766; Fungi - 447; Plants - 343; Viruses - 1; Other Eukaryotes - 754 (source: NCBI BLink).  protein_id AT1G05470.1p  transcript_id AT1G05470.1  protein_id AT1G05470.1p  transcript_id AT1G05470.1  
At1g05490	chr1:001621048	0.0	C/1621048-1623195,1620817-1620966,1618795-1620729	AT1G05490.1  CDS  gene_syn T25N20.14, chr31, chromatin remodeling 31  gene chr31  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_process biological_process|GO:0008150||ND  product chr31 (chromatin remodeling 31); ATP binding / DNA binding / helicase/ nucleic acid binding  note chromatin remodeling 31 (chr31); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chr40 (chromatin remodeling 40); ATP binding / DNA binding / helicase/ nucleic acid binding (TAIR:AT3G24340.1); Has 31678 Blast hits to 20340 proteins in 1252 species: Archae - 143; Bacteria - 7169; Metazoa - 10771; Fungi - 4378; Plants - 1087; Viruses - 234; Other Eukaryotes - 7896 (source: NCBI BLink).  protein_id AT1G05490.1p  transcript_id AT1G05490.1  protein_id AT1G05490.1p  transcript_id AT1G05490.1  
At1g05500	chr1:001625098	0.0	W/1625098-1625202,1625285-1625389,1625527-1625577,1625698-1625818,1626231-1626352,1626510-1626611,1626842-1626916,1627329-1627408,1627604-1627754,1627828-1628058,1628160-1628438,1628529-1628642,1628794-1628940	AT1G05500.1  CDS  gene_syn ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, ATSYTE, NTMC2T2.1, NTMC2TYPE2.1, SYNAPTOTAGMIN HOMOLOG E, SYTE, T25N20.15  gene NTMC2T2.1  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NTMC2T2.1  note NTMC2T2.1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: SYTD (TAIR:AT5G11100.1); Has 9319 Blast hits to 5090 proteins in 209 species: Archae - 0; Bacteria - 0; Metazoa - 6456; Fungi - 877; Plants - 1262; Viruses - 0; Other Eukaryotes - 724 (source: NCBI BLink).  protein_id AT1G05500.1p  transcript_id AT1G05500.1  protein_id AT1G05500.1p  transcript_id AT1G05500.1  
At1g05510	chr1:001629527	0.0	W/1629527-1629672,1630016-1630419,1630515-1630690	AT1G05510.1  CDS  gene_syn T25N20.16  function Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.  go_component cellular_component|GO:0005575||ND  go_process response to abscisic acid stimulus|GO:0009737|18768909|IEP  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: seed; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1264 (InterPro:IPR010686); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31985.1); Has 189 Blast hits to 189 proteins in 83 species: Archae - 0; Bacteria - 85; Metazoa - 0; Fungi - 43; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05510.1p  transcript_id AT1G05510.1  protein_id AT1G05510.1p  transcript_id AT1G05510.1  
At1g05520	chr1:001634918	0.0	C/1634918-1635703,1634604-1634777,1633934-1634095,1633619-1633761,1633400-1633475,1633132-1633304,1632972-1633053,1632344-1632421,1631916-1632077,1631579-1631842,1631390-1631494,1631126-1631272	AT1G05520.1  CDS  gene_syn T25N20.17  go_component COPII vesicle coat|GO:0030127||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process transport|GO:0006810||ISS  go_process response to salt stress|GO:0009651|11351099|IEP  go_function transporter activity|GO:0005215||ISS  product transport protein, putative  note transport protein, putative; FUNCTIONS IN: protein binding, transporter activity, zinc ion binding; INVOLVED IN: transport, response to salt stress; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24 helical region (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24 trunk region (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin region (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: transport protein, putative (TAIR:AT3G23660.1); Has 994 Blast hits to 985 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 420; Fungi - 283; Plants - 133; Viruses - 0; Other Eukaryotes - 158 (source: NCBI BLink).  protein_id AT1G05520.1p  transcript_id AT1G05520.1  protein_id AT1G05520.1p  transcript_id AT1G05520.1  
At1g05530	chr1:001636496	0.0	C/1636496-1637863	AT1G05530.1  CDS  gene_syn T25N20.18, UDP-GLUCOSYL TRANSFERASE 2, UDP-GLUCOSYL TRANSFERASE 75B2, UGT2, UGT75B2  gene UGT75B2  function Encodes a protein with glucosyltransferase activity with high sequence homology to UGT1 (AT1G05560). It belongs to an UGT subfamily that binds UDP-glucose but not UDP-glucuronate, UDP-galactose, or UDP-rhamnose as the glycosyl donor. UGT2 was shown to be able to use abscisic acid as glycosylation substrate in the presence of UDP-glucose.  go_process metabolic process|GO:0008152||IEA  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function abscisic acid glucosyltransferase activity|GO:0010294||IDA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function UDP-glucosyltransferase activity|GO:0035251|11283335|ISS  product UGT75B2 (UDP-GLUCOSYL TRANSFERASE 75B2); UDP-glucosyltransferase/ UDP-glycosyltransferase/ abscisic acid glucosyltransferase/ transferase, transferring glycosyl groups  note UDP-GLUCOSYL TRANSFERASE 75B2 (UGT75B2); FUNCTIONS IN: UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, abscisic acid glucosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; EXPRESSED IN: sperm cell, root; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT75B1 (UDP-GLUCOSYLTRANSFERASE 75B1); UDP-glucose:4-aminobenzoate acylglucosyltransferase/ UDP-glucosyltransferase/ UDP-glycosyltransferase/ abscisic acid glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT1G05560.1); Has 4347 Blast hits to 4324 proteins in 322 species: Archae - 0; Bacteria - 140; Metazoa - 1377; Fungi - 14; Plants - 2682; Viruses - 106; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT1G05530.1p  transcript_id AT1G05530.1  protein_id AT1G05530.1p  transcript_id AT1G05530.1  
At1g05540	chr1:001639348	0.0	W/1639348-1639401,1639587-1640314,1640386-1640707	AT1G05540.1  CDS  gene_syn T25N20.19  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30160.2); Has 120 Blast hits to 118 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05540.1p  transcript_id AT1G05540.1  protein_id AT1G05540.1p  transcript_id AT1G05540.1  
At1g05550	chr1:001642582	0.0	C/1642582-1642593,1641717-1642373	AT1G05550.2  CDS  gene_syn T25N20.20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05540.1).  protein_id AT1G05550.2p  transcript_id AT1G05550.2  protein_id AT1G05550.2p  transcript_id AT1G05550.2  
At1g05550	chr1:001642586	0.0	C/1642586-1642639,1641717-1642373	AT1G05550.1  CDS  gene_syn T25N20.20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05540.1); Has 168 Blast hits to 116 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 168; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05550.1p  transcript_id AT1G05550.1  protein_id AT1G05550.1p  transcript_id AT1G05550.1  
At1g05560	chr1:001645674	0.0	C/1645674-1647083	AT1G05560.1  CDS  gene_syn T25N20.21, UDP-GLUCOSE TRANSFERASE 1, UDP-GLUCOSYLTRANSFERASE, UDP-GLUCOSYLTRANSFERASE 75B1, UGT1, UGT75B1  gene UGT75B1  function A UDP-glucose transferase localized in the phragmoplast. It has been co-purified with the callose synthase complex and may transfer UDP-glucose from sucrose synthase to the callose synthase and thus help form a substrate channel for the synthesis of callose at the forming cell plate. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. UGT1 encodes a protein with glucosyltransferase activity with high sequence homology to UGT2 (AT1G05530). It belongs to an UGT subfamily that binds UDP-glucose but not UDP-glucuronate, UDP-galactose, or UDP-rhamnose as the glycosyl donor. UGT1 was shown to be able to use abscisic acid as glycosylation substrate in the presence of UDP-glucose. UGT1/UGT75B1 catalyzes the formation of the p-aminobenzoate-glucose ester in vitro and in vivo. It appears to be the enzyme predominantly responsible for pABA-Glc formation in Arabidopsis based on assays in leaves, flowers, and siliques.  go_component phragmoplast|GO:0009524|11283335|IDA  go_process response to salicylic acid stimulus|GO:0009751|16307367|IEP  go_process cell plate formation involved in plant-type cell wall biogenesis|GO:0009920|11283335|TAS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_process para-aminobenzoic acid metabolic process|GO:0046482|18385129|IDA  go_function UDP-glycosyltransferase activity|GO:0008194|11283335|ISS  go_function UDP-glycosyltransferase activity|GO:0008194|11283335|TAS  go_function abscisic acid glucosyltransferase activity|GO:0010294||IDA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function UDP-glucosyltransferase activity|GO:0035251|16307367|TAS  go_function UDP-glucosyltransferase activity|GO:0035251|18702669|IDA  go_function UDP-glucose:4-aminobenzoate acylglucosyltransferase activity|GO:0080002|18385129|IDA  product UGT75B1 (UDP-GLUCOSYLTRANSFERASE 75B1); UDP-glucose:4-aminobenzoate acylglucosyltransferase/ UDP-glucosyltransferase/ UDP-glycosyltransferase/ abscisic acid glucosyltransferase/ transferase, transferring glycosyl groups  note UDP-GLUCOSYLTRANSFERASE 75B1 (UGT75B1); FUNCTIONS IN: UDP-glucose:4-aminobenzoate acylglucosyltransferase activity, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, abscisic acid glucosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: response to cyclopentenone, para-aminobenzoic acid metabolic process, cell plate formation involved in plant-type cell wall biogenesis, response to salicylic acid stimulus; LOCATED IN: phragmoplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT75B2 (UDP-GLUCOSYL TRANSFERASE 75B2); UDP-glucosyltransferase/ UDP-glycosyltransferase/ abscisic acid glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT1G05530.1); Has 4874 Blast hits to 4844 proteins in 343 species: Archae - 0; Bacteria - 192; Metazoa - 1832; Fungi - 18; Plants - 2693; Viruses - 107; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT1G05560.1p  transcript_id AT1G05560.1  protein_id AT1G05560.1p  transcript_id AT1G05560.1  
At1g05570	chr1:001658491	0.0	C/1658491-1658677,1658299-1658399,1658084-1658205,1657888-1657981,1657641-1657751,1657440-1657556,1657263-1657355,1657067-1657158,1656795-1656921,1656555-1656692,1656391-1656467,1656201-1656294,1655830-1655949,1655631-1655748,1655120-1655457,1654976-1655028,1654832-1654892,1654588-1654669,1654451-1654500,1654282-1654368,1654019-1654156,1653823-1653917,1652967-1653051,1652719-1652879,1652514-1652637,1652327-1652424,1652114-1652243,1651833-1651984,1651648-1651757,1651437-1651562,1651256-1651324,1650982-1651171,1650728-1650887,1650457-1650576,1650216-1650334,1650044-1650127,1649850-1649962,1649531-1649760,1648626-1649426,1648499-1648549,1648227-1648412,1647880-1648128	AT1G05570.1  CDS  gene_syn ATGSL06, ATGSL6, CALLOSE SYNTHASE 1, CALS1, F3F20.1, F3F20_1, GLUCAN SYNTHASE-LIKE 6, GSL06, GSL6  gene CALS1  function Encodes a callose synthase 1 catalytic subunit . Member of Glycosyltransferase Family- 48.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component 1,3-beta-glucan synthase complex|GO:0000148|11283334|ISS  go_component cell plate|GO:0009504|11283334|IDA  go_process 1,3-beta-glucan biosynthetic process|GO:0006075|11283334|ISS  go_function 1,3-beta-glucan synthase activity|GO:0003843||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product CALS1 (CALLOSE SYNTHASE 1); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups  note CALLOSE SYNTHASE 1 (CALS1); FUNCTIONS IN: transferase activity, transferring glycosyl groups, 1,3-beta-glucan synthase activity; INVOLVED IN: 1,3-beta-glucan biosynthetic process; LOCATED IN: 1,3-beta-glucan synthase complex, plasma membrane, cell plate; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 48 (InterPro:IPR003440); BEST Arabidopsis thaliana protein match is: ATGSL03 (GLUCAN SYNTHASE-LIKE 3); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups (TAIR:AT2G31960.1); Has 915 Blast hits to 682 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 64; Fungi - 537; Plants - 284; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G05570.1p  transcript_id AT1G05570.1  protein_id AT1G05570.1p  transcript_id AT1G05570.1  
At1g05575	chr1:001661829	0.0	C/1661829-1662098	AT1G05575.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 36 Blast hits to 36 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05575.1p  transcript_id AT1G05575.1  protein_id AT1G05575.1p  transcript_id AT1G05575.1  
At1g05577	chr1:001664156	0.0	C/1664156-1664288,1664000-1664069,1663807-1663922,1663236-1663734,1662914-1663018,1662643-1662838	AT1G05577.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF966 (InterPro:IPR010369); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59790.1); Has 88 Blast hits to 87 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05577.1p  transcript_id AT1G05577.1  protein_id AT1G05577.1p  transcript_id AT1G05577.1  
At1g05580	chr1:001667999	0.0	C/1667999-1668377,1667237-1667778,1665594-1666943	AT1G05580.2  CDS  gene_syn ATCHX23, CATION/H+ EXCHANGER 23, CHX23, F3F20.2, F3F20_2  gene ATCHX23  function member of Putative Na+/H+ antiporter family  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|IC  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product ATCHX23 (CATION/H+ EXCHANGER 23); monovalent cation:proton antiporter/ sodium:hydrogen antiporter  note CATION/H+ EXCHANGER 23 (ATCHX23); FUNCTIONS IN: monovalent cation:proton antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: male gametophyte, leaf; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: ATCHX21 (CATION/H+ EXCHANGER 21); sodium:hydrogen antiporter (TAIR:AT2G31910.1); Has 3151 Blast hits to 3135 proteins in 871 species: Archae - 145; Bacteria - 2302; Metazoa - 0; Fungi - 94; Plants - 254; Viruses - 0; Other Eukaryotes - 356 (source: NCBI BLink).  protein_id AT1G05580.2p  transcript_id AT1G05580.2  protein_id AT1G05580.2p  transcript_id AT1G05580.2  
At1g05580	chr1:001668540	0.0	C/1668540-1668794,1667999-1668455,1667237-1667778,1665594-1666943	AT1G05580.1  CDS  gene_syn ATCHX23, CATION/H+ EXCHANGER 23, CHX23, F3F20.2, F3F20_2  gene ATCHX23  function member of Putative Na+/H+ antiporter family  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|IC  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product ATCHX23 (CATION/H+ EXCHANGER 23); monovalent cation:proton antiporter/ sodium:hydrogen antiporter  note CATION/H+ EXCHANGER 23 (ATCHX23); FUNCTIONS IN: monovalent cation:proton antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte, leaf; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: ATCHX21 (CATION/H+ EXCHANGER 21); sodium:hydrogen antiporter (TAIR:AT2G31910.1); Has 3607 Blast hits to 3589 proteins in 924 species: Archae - 175; Bacteria - 2696; Metazoa - 0; Fungi - 96; Plants - 257; Viruses - 0; Other Eukaryotes - 383 (source: NCBI BLink).  protein_id AT1G05580.1p  transcript_id AT1G05580.1  protein_id AT1G05580.1p  transcript_id AT1G05580.1  
At1g05590	chr1:001669871	0.0	W/1669871-1670660,1670734-1671686	AT1G05590.1  CDS  gene_syn ATHEX3, BETA-HEXOSAMINIDASE 2, BETA-HEXOSAMINIDASE 3, F3F20.4, F3F20_4, HEXO2  gene HEXO2  function Encodes a protein with & 946;-hexosaminidase activity (the enzyme is active with p-nitrophenyl-& 946;-N-acetylglucosaminide as substrate but displayed only a minor activity toward p-nitrophenyl-& 946;-N-acetylgalactosaminide). Chitotriose-PA was digested almost completely overnight by a 50% ammonium sulfate fraction of a supernatant yeast expressing AtHEX3.  go_process carbohydrate metabolic process|GO:0005975||IEA  go_component plasma membrane|GO:0005886|17644627|IDA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function beta-N-acetylhexosaminidase activity|GO:0004563|17644627|IDA  go_function hexosaminidase activity|GO:0015929|17636254|IDA  product HEXO2 (BETA-HEXOSAMINIDASE 2); beta-N-acetylhexosaminidase/ hexosaminidase/ hydrolase, hydrolyzing O-glycosyl compounds  note BETA-HEXOSAMINIDASE 2 (HEXO2); FUNCTIONS IN: hexosaminidase activity, beta-N-acetylhexosaminidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 20, catalytic core (InterPro:IPR015883), Beta-N-acetylhexosaminidase-like (InterPro:IPR015882), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 20 (InterPro:IPR001540), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: HEXO1 (BETA-HEXOSAMINIDASE 1); beta-N-acetylhexosaminidase/ hexosaminidase/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT3G55260.1); Has 2277 Blast hits to 2231 proteins in 429 species: Archae - 0; Bacteria - 1137; Metazoa - 404; Fungi - 138; Plants - 60; Viruses - 0; Other Eukaryotes - 538 (source: NCBI BLink).  protein_id AT1G05590.1p  transcript_id AT1G05590.1  protein_id AT1G05590.1p  transcript_id AT1G05590.1  
At1g05600	chr1:001672161	0.0	W/1672161-1673675	AT1G05600.1  CDS  gene_syn F3F20.5, F3F20_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G46100.1); Has 9761 Blast hits to 3325 proteins in 121 species: Archae - 0; Bacteria - 2; Metazoa - 101; Fungi - 82; Plants - 9383; Viruses - 0; Other Eukaryotes - 193 (source: NCBI BLink).  protein_id AT1G05600.1p  transcript_id AT1G05600.1  protein_id AT1G05600.1p  transcript_id AT1G05600.1  
At1g05610	chr1:001675485	0.0	C/1675485-1675934,1675132-1675392,1674890-1675063,1674732-1674817,1674517-1674634,1674324-1674422,1674104-1674229,1673895-1674011	AT1G05610.1  CDS  gene_syn ADP-GLUCOSE PYROPHOSPHORYLASE, ADP-glucose pyrophoshorylase small subunit 2, APS2, F3F20.6, F3F20_6  gene APS2  function Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. The presence of the small subunit is required for large subunit stability. Two isoforms of the small subunit (ApS1 and ApS2) have been described. ApS2 is a minor small subunit isoform present in all plant tissues tested.  go_process biosynthetic process|GO:0009058||IEA  go_function transferase activity|GO:0016740||IEA  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_function glucose-1-phosphate adenylyltransferase activity|GO:0008878||ISS  product APS2 (ADP-glucose pyrophoshorylase small subunit 2); glucose-1-phosphate adenylyltransferase/ nucleotidyltransferase/ transferase  note ADP-glucose pyrophoshorylase small subunit 2 (APS2); FUNCTIONS IN: transferase activity, glucose-1-phosphate adenylyltransferase activity, nucleotidyltransferase activity; INVOLVED IN: biosynthetic process; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ADP-glucose pyrophosphorylase, conserved site (InterPro:IPR005836), Trimeric LpxA-like (InterPro:IPR011004), Bacterial transferase hexapeptide repeat (InterPro:IPR001451), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: ADG1 (ADP GLUCOSE PYROPHOSPHORYLASE 1); glucose-1-phosphate adenylyltransferase (TAIR:AT5G48300.1); Has 4420 Blast hits to 4420 proteins in 925 species: Archae - 156; Bacteria - 2476; Metazoa - 15; Fungi - 9; Plants - 1213; Viruses - 0; Other Eukaryotes - 551 (source: NCBI BLink).  protein_id AT1G05610.1p  transcript_id AT1G05610.1  protein_id AT1G05610.1p  transcript_id AT1G05610.1  
At1g05615	chr1:001678116	0.0	C/1678116-1678270,1677901-1677964,1677507-1677806	AT1G05615.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24670.1); Has 37 Blast hits to 37 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05615.1p  transcript_id AT1G05615.1  protein_id AT1G05615.1p  transcript_id AT1G05615.1  
At1g05620	chr1:001679286	0.0	W/1679286-1679337,1679601-1679716,1679824-1679883,1680121-1680306,1680401-1680505,1680623-1680719,1680914-1681021,1681162-1681297,1681419-1681527	AT1G05620.1  CDS  gene_syn F3F20.7, F3F20_7, URH2, URIDINE-RIBOHYDROLASE 2  gene URH2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product URH2 (URIDINE-RIBOHYDROLASE 2); hydrolase  note URIDINE-RIBOHYDROLASE 2 (URH2); FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Inosine/uridine-preferring nucleoside hydrolase (InterPro:IPR001910); BEST Arabidopsis thaliana protein match is: URH1 (URIDINE-RIBOHYDROLASE 1); adenosine nucleosidase/ hydrolase/ inosine nucleosidase/ uridine nucleosidase (TAIR:AT2G36310.1); Has 3510 Blast hits to 3474 proteins in 706 species: Archae - 26; Bacteria - 2065; Metazoa - 165; Fungi - 155; Plants - 94; Viruses - 0; Other Eukaryotes - 1005 (source: NCBI BLink).  protein_id AT1G05620.1p  transcript_id AT1G05620.1  protein_id AT1G05620.1p  transcript_id AT1G05620.1  
At1g05620	chr1:001679609	0.0	W/1679609-1679716,1679824-1679883,1680121-1680306,1680401-1680505,1680623-1680719,1680914-1681021,1681162-1681297,1681419-1681527	AT1G05620.2  CDS  gene_syn F3F20.7, F3F20_7, URH2, URIDINE-RIBOHYDROLASE 2  gene URH2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product URH2 (URIDINE-RIBOHYDROLASE 2); hydrolase  note URIDINE-RIBOHYDROLASE 2 (URH2); FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Inosine/uridine-preferring nucleoside hydrolase (InterPro:IPR001910); BEST Arabidopsis thaliana protein match is: URH1 (URIDINE-RIBOHYDROLASE 1); adenosine nucleosidase/ hydrolase/ inosine nucleosidase/ uridine nucleosidase (TAIR:AT2G36310.1); Has 3384 Blast hits to 3371 proteins in 699 species: Archae - 26; Bacteria - 2026; Metazoa - 165; Fungi - 149; Plants - 85; Viruses - 0; Other Eukaryotes - 933 (source: NCBI BLink).  protein_id AT1G05620.2p  transcript_id AT1G05620.2  protein_id AT1G05620.2p  transcript_id AT1G05620.2  
At1g05630	chr1:001682483	0.0	W/1682483-1683299,1683389-1683641,1683734-1684541,1684645-1684769,1684903-1684987,1685319-1685484,1685587-1685627,1685714-1685981,1686127-1686250,1686348-1686708,1686791-1687153	AT1G05630.2  CDS  gene_syn 5PTASE13, AT5PTASE13, F3F20.8, F3F20_8  gene 5PTASE13  function Encodes an inositol polyphosphate 5-phosphatase with phosphatase activity toward only Ins(1,4,5)P3. Induced in response to ABA and wounding treatments. Expressed in young seedlings and flowers, while no transcripts were detectable in maturated roots, stems, and rosette leaves Modulates the development of cotyledon veins through its regulation of auxin homeostasis. Involved in blue light light stimulated increase in cytosolic calcium ion.  go_component nucleus|GO:0005634|18931139|IDA  go_process response to nutrient|GO:0007584|18931139|IMP  go_process response to wounding|GO:0009611|15574849|IEP  go_process response to blue light|GO:0009637|18252844|IEP  go_process response to blue light|GO:0009637|18252844|IMP  go_process response to abscisic acid stimulus|GO:0009737|15574849|IEP  go_process response to abscisic acid stimulus|GO:0009737|18931139|IMP  go_process response to carbohydrate stimulus|GO:0009743|18931139|IMP  go_process phloem or xylem histogenesis|GO:0010087|16299182|IMP  go_process sugar mediated signaling|GO:0010182|18931139|IMP  go_process auxin homeostasis|GO:0010252|16299182|IMP  go_process root development|GO:0048364|18931139|IMP  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437|15574849|IDA  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437|18931139|IMP  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437||ISS  product 5PTASE13; inositol or phosphatidylinositol phosphatase  note 5PTASE13; FUNCTIONS IN: inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: in 9 processes; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), WD40 repeat-like (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein (TAIR:AT2G31830.1); Has 1454 Blast hits to 1427 proteins in 165 species: Archae - 0; Bacteria - 15; Metazoa - 627; Fungi - 341; Plants - 258; Viruses - 0; Other Eukaryotes - 213 (source: NCBI BLink).  protein_id AT1G05630.2p  transcript_id AT1G05630.2  protein_id AT1G05630.2p  transcript_id AT1G05630.2  
At1g05630	chr1:001682483	0.0	W/1682483-1683299,1683389-1683641,1683734-1684541,1684645-1684769,1684903-1684987,1685319-1685627,1685714-1685981,1686127-1686250,1686348-1686708,1686791-1687153	AT1G05630.1  CDS  gene_syn 5PTASE13, AT5PTASE13, F3F20.8, F3F20_8  gene 5PTASE13  function Encodes an inositol polyphosphate 5-phosphatase with phosphatase activity toward only Ins(1,4,5)P3. Induced in response to ABA and wounding treatments. Expressed in young seedlings and flowers, while no transcripts were detectable in maturated roots, stems, and rosette leaves Modulates the development of cotyledon veins through its regulation of auxin homeostasis. Involved in blue light light stimulated increase in cytosolic calcium ion.  go_component nucleus|GO:0005634|18931139|IDA  go_process response to nutrient|GO:0007584|18931139|IMP  go_process response to wounding|GO:0009611|15574849|IEP  go_process response to blue light|GO:0009637|18252844|IEP  go_process response to blue light|GO:0009637|18252844|IMP  go_process response to abscisic acid stimulus|GO:0009737|15574849|IEP  go_process response to abscisic acid stimulus|GO:0009737|18931139|IMP  go_process response to carbohydrate stimulus|GO:0009743|18931139|IMP  go_process phloem or xylem histogenesis|GO:0010087|16299182|IMP  go_process sugar mediated signaling|GO:0010182|18931139|IMP  go_process auxin homeostasis|GO:0010252|16299182|IMP  go_process root development|GO:0048364|18931139|IMP  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437|15574849|IDA  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437|18931139|IMP  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437||ISS  product 5PTASE13; inositol or phosphatidylinositol phosphatase  note 5PTASE13; FUNCTIONS IN: inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: in 9 processes; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), WD40 repeat-like (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein (TAIR:AT2G31830.1); Has 1919 Blast hits to 1408 proteins in 163 species: Archae - 0; Bacteria - 15; Metazoa - 860; Fungi - 444; Plants - 345; Viruses - 0; Other Eukaryotes - 255 (source: NCBI BLink).  protein_id AT1G05630.1p  transcript_id AT1G05630.1  protein_id AT1G05630.1p  transcript_id AT1G05630.1  
At1g05640	chr1:001688898	0.0	C/1688898-1689501,1688389-1688798,1687436-1688305	AT1G05640.1  CDS  gene_syn F3F20.9, F3F20_9  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT2G31820.1); Has 53987 Blast hits to 21643 proteins in 757 species: Archae - 45; Bacteria - 3706; Metazoa - 28168; Fungi - 4503; Plants - 2747; Viruses - 485; Other Eukaryotes - 14333 (source: NCBI BLink).  protein_id AT1G05640.1p  transcript_id AT1G05640.1  protein_id AT1G05640.1p  transcript_id AT1G05640.1  
At1g05650	chr1:001691689	0.0	C/1691689-1692126,1690979-1691268,1690602-1690830,1690264-1690491	AT1G05650.1  CDS  gene_syn F3F20.10, F3F20_10  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product polygalacturonase, putative / pectinase, putative  note polygalacturonase, putative / pectinase, putative; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: polygalacturonase, putative / pectinase, putative (TAIR:AT1G05660.1); Has 2385 Blast hits to 2377 proteins in 298 species: Archae - 2; Bacteria - 431; Metazoa - 8; Fungi - 997; Plants - 877; Viruses - 2; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT1G05650.1p  transcript_id AT1G05650.1  protein_id AT1G05650.1p  transcript_id AT1G05650.1  
At1g05660	chr1:001695621	0.0	C/1695621-1696058,1694996-1695285,1694620-1694848,1694286-1694513	AT1G05660.1  CDS  gene_syn F3F20.11, F3F20_11  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product polygalacturonase, putative / pectinase, putative  note polygalacturonase, putative / pectinase, putative; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: polygalacturonase, putative / pectinase, putative (TAIR:AT1G05650.1); Has 2393 Blast hits to 2384 proteins in 303 species: Archae - 2; Bacteria - 431; Metazoa - 8; Fungi - 992; Plants - 890; Viruses - 2; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT1G05660.1p  transcript_id AT1G05660.1  protein_id AT1G05660.1p  transcript_id AT1G05660.1  
At1g05670	chr1:001702071	0.0	C/1702071-1702715,1701326-1701929,1700990-1701153,1698574-1700715	AT1G05670.1  CDS  gene_syn F3F20.12, F3F20_12  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT1G05680.1); Has 33439 Blast hits to 11406 proteins in 464 species: Archae - 3; Bacteria - 229; Metazoa - 3199; Fungi - 827; Plants - 27610; Viruses - 120; Other Eukaryotes - 1451 (source: NCBI BLink).  protein_id AT1G05670.1p  transcript_id AT1G05670.1  protein_id AT1G05670.1p  transcript_id AT1G05670.1  
At1g05670	chr1:001702071	0.0	C/1702071-1702715,1701326-1701929,1700990-1701153,1698574-1700715	AT1G05670.2  CDS  gene_syn F3F20.12, F3F20_12  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT1G05680.1).  protein_id AT1G05670.2p  transcript_id AT1G05670.2  protein_id AT1G05670.2p  transcript_id AT1G05670.2  
At1g05680	chr1:001703995	0.0	C/1703995-1704639,1703196-1703912	AT1G05680.1  CDS  gene_syn F3F20.13, F3F20_13  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  go_function UDP-glucosyltransferase activity|GO:0035251|18702669|IDA  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT1G05670.2); Has 5259 Blast hits to 5222 proteins in 351 species: Archae - 0; Bacteria - 208; Metazoa - 2177; Fungi - 15; Plants - 2710; Viruses - 116; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT1G05680.1p  transcript_id AT1G05680.1  protein_id AT1G05680.1p  transcript_id AT1G05680.1  
At1g05690	chr1:001707809	0.0	W/1707809-1708027,1708105-1708235,1708312-1708926,1709003-1709132	AT1G05690.1  CDS  gene_syn BT3, BTB AND TAZ DOMAIN PROTEIN 3, F3F20.14, F3F20_14  gene BT3  function BTB and TAZ domain protein. Acts redunantly with BT1 and BT2 during female gametophyte development. Acts with BT2 during male gametophyte development.  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process embryo sac development|GO:0009553|19054356|IGI  go_process pollen development|GO:0009555|19054356|IGI  go_function protein binding|GO:0005515||ISS  go_function transcription regulator activity|GO:0030528|10748221|TAS  product BT3 (BTB AND TAZ DOMAIN PROTEIN 3); protein binding / transcription regulator  note BTB AND TAZ DOMAIN PROTEIN 3 (BT3); FUNCTIONS IN: protein binding, transcription regulator activity; INVOLVED IN: embryo sac development, pollen development; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), Zinc finger, TAZ-type (InterPro:IPR000197), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BT4 (BTB AND TAZ DOMAIN PROTEIN 4); protein binding / transcription regulator (TAIR:AT5G67480.2); Has 1425 Blast hits to 1422 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 934; Fungi - 0; Plants - 439; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT1G05690.1p  transcript_id AT1G05690.1  protein_id AT1G05690.1p  transcript_id AT1G05690.1  
At1g05700	chr1:001709796	0.0	W/1709796-1709883,1709983-1710520,1710647-1711122,1711202-1711340,1711429-1711500,1711596-1711667,1711739-1711972,1712093-1712285,1712362-1712551,1712638-1712827,1712906-1713245	AT1G05700.1  CDS  gene_syn F3F20.15, F3F20_15  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat protein kinase, putative  note leucine-rich repeat protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, stem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: light repressible receptor protein kinase (TAIR:AT4G29990.1); Has 110949 Blast hits to 88510 proteins in 3306 species: Archae - 58; Bacteria - 8079; Metazoa - 38064; Fungi - 6544; Plants - 42070; Viruses - 471; Other Eukaryotes - 15663 (source: NCBI BLink).  protein_id AT1G05700.1p  transcript_id AT1G05700.1  protein_id AT1G05700.1p  transcript_id AT1G05700.1  
At1g05710	chr1:001716198	0.0	W/1716198-1716308,1716419-1716484,1716559-1716624,1716691-1716735,1716862-1717023	AT1G05710.1  CDS  gene_syn F3F20.16, F3F20_16  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_process response to ethylene stimulus|GO:0009723||ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product ethylene-responsive protein, putative  note ethylene-responsive protein, putative; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to ethylene stimulus, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: ethylene-responsive protein, putative (TAIR:AT2G31730.1); Has 547 Blast hits to 547 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 547; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05710.1p  transcript_id AT1G05710.1  protein_id AT1G05710.1p  transcript_id AT1G05710.1  
At1g05710	chr1:001716198	0.0	W/1716198-1716308,1716419-1716484,1716559-1716624,1716691-1716735,1716862-1717023	AT1G05710.3  CDS  gene_syn F3F20.16, F3F20_16  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_process response to ethylene stimulus|GO:0009723||ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product ethylene-responsive protein, putative  note ethylene-responsive protein, putative; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to ethylene stimulus, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: ethylene-responsive protein, putative (TAIR:AT2G31730.1); Has 547 Blast hits to 547 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 547; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05710.3p  transcript_id AT1G05710.3  protein_id AT1G05710.3p  transcript_id AT1G05710.3  
At1g05710	chr1:001716198	0.0	W/1716198-1716308,1716419-1716484,1716559-1716624,1716691-1716735,1716862-1717023	AT1G05710.4  CDS  gene_syn F3F20.16, F3F20_16  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_process response to ethylene stimulus|GO:0009723||ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product ethylene-responsive protein, putative  note ethylene-responsive protein, putative; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to ethylene stimulus, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: ethylene-responsive protein, putative (TAIR:AT2G31730.1); Has 547 Blast hits to 547 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 547; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05710.4p  transcript_id AT1G05710.4  protein_id AT1G05710.4p  transcript_id AT1G05710.4  
At1g05710	chr1:001716198	0.0	W/1716198-1716308,1716419-1716484,1716559-1716735,1716862-1717023	AT1G05710.2  CDS  gene_syn F3F20.16, F3F20_16  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_process response to ethylene stimulus|GO:0009723||ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product ethylene-responsive protein, putative  note ethylene-responsive protein, putative; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to ethylene stimulus, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: ethylene-responsive protein, putative (TAIR:AT2G31730.1); Has 463 Blast hits to 463 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 463; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05710.2p  transcript_id AT1G05710.2  protein_id AT1G05710.2p  transcript_id AT1G05710.2  
At1g05720	chr1:001718672	0.0	C/1718672-1718849,1718430-1718488,1718120-1718301,1717677-1717749	AT1G05720.1  CDS  gene_syn F3F20.17, F3F20_17  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function selenium binding|GO:0008430||ISS  product selenoprotein family protein  note selenoprotein family protein; FUNCTIONS IN: selenium binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sep15/SelM redox (InterPro:IPR014912); Has 143 Blast hits to 143 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G05720.1p  transcript_id AT1G05720.1  protein_id AT1G05720.1p  transcript_id AT1G05720.1  
At1g05730	chr1:001719107	0.0	W/1719107-1719235,1719760-1719897,1719977-1720159	AT1G05730.1  CDS  gene_syn F3F20.18, F3F20_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF842, eukaryotic (InterPro:IPR008560); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31725.1); Has 186 Blast hits to 186 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 148; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G05730.1p  transcript_id AT1G05730.1  protein_id AT1G05730.1p  transcript_id AT1G05730.1  
At1g05740	chr1:001720674	0.0	W/1720674-1720802,1720923-1721093,1721172-1721309	AT1G05740.1  CDS  gene_syn F3F20.19, F3F20_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF842, eukaryotic (InterPro:IPR008560); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05730.1); Has 107 Blast hits to 107 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 76; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G05740.1p  transcript_id AT1G05740.1  protein_id AT1G05740.1p  transcript_id AT1G05740.1  
At1g05750	chr1:001721523	0.0	W/1721523-1723025	AT1G05750.1  CDS  gene_syn PDE247, T20M3.1, T20M3_1, pigment defective 247  gene PDE247  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product PDE247 (pigment defective 247)  note pigment defective 247 (PDE247); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: shoot apex, sperm cell, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G20540.1); Has 15650 Blast hits to 5061 proteins in 155 species: Archae - 1; Bacteria - 6; Metazoa - 72; Fungi - 40; Plants - 15230; Viruses - 0; Other Eukaryotes - 301 (source: NCBI BLink).  protein_id AT1G05750.1p  transcript_id AT1G05750.1  protein_id AT1G05750.1p  transcript_id AT1G05750.1  
At1g05760	chr1:001724234	0.0	C/1724234-1724440,1723797-1724114	AT1G05760.1  CDS  gene_syn RTM1, T20M3.2, T20M3_2, restricted tev movement 1  gene RTM1  function Specifically restrict the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance  go_component cellular_component|GO:0005575||ND  go_process response to virus|GO:0009615|9628015|IMP  go_function sugar binding|GO:0005529|10618445|ISS  product RTM1 (restricted tev movement 1); sugar binding  note restricted tev movement 1 (RTM1); FUNCTIONS IN: sugar binding; INVOLVED IN: response to virus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin lectin family protein (TAIR:AT1G05770.1); Has 561 Blast hits to 348 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 560; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G05760.1p  transcript_id AT1G05760.1  protein_id AT1G05760.1p  transcript_id AT1G05760.1  
At1g05770	chr1:001726032	0.0	C/1726032-1726250,1725547-1725882	AT1G05770.1  CDS  gene_syn T20M3.3, T20M3_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product jacalin lectin family protein  note jacalin lectin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: RTM1 (restricted tev movement 1); sugar binding (TAIR:AT1G05760.1); Has 308 Blast hits to 229 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 308; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05770.1p  transcript_id AT1G05770.1  protein_id AT1G05770.1p  transcript_id AT1G05770.1  
At1g05780	chr1:001726761	0.0	W/1726761-1726857,1727957-1728180	AT1G05780.1  CDS  gene_syn T20M3.4, T20M3_4  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31710.1); Has 17 Blast hits to 17 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05780.1p  transcript_id AT1G05780.1  protein_id AT1G05780.1p  transcript_id AT1G05780.1  
At1g05785	chr1:001730981	0.0	W/1730981-1731008,1731294-1731385,1731467-1731547,1731631-1731728,1732014-1732089,1732374-1732406	AT1G05785.1  CDS  go_process vesicle-mediated transport|GO:0016192||IEA  go_component cellular_component|GO:0005575||ND  go_process vesicle-mediated transport|GO:0016192||ISS  go_function molecular_function|GO:0003674||ND  product Got1-like family protein  note Got1-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Got1-like protein (InterPro:IPR007305); BEST Arabidopsis thaliana protein match is: Got1-like family protein (TAIR:AT5G01430.1); Has 318 Blast hits to 318 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 137; Fungi - 75; Plants - 52; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT1G05785.1p  transcript_id AT1G05785.1  protein_id AT1G05785.1p  transcript_id AT1G05785.1  
At1g05785	chr1:001730981	0.0	W/1730981-1731008,1731294-1731385,1731467-1731547,1731631-1731728,1732014-1732089,1732374-1732406	AT1G05785.2  CDS  go_process vesicle-mediated transport|GO:0016192||IEA  go_component cellular_component|GO:0005575||ND  go_process vesicle-mediated transport|GO:0016192||ISS  go_function molecular_function|GO:0003674||ND  product Got1-like family protein  note Got1-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Got1-like protein (InterPro:IPR007305); BEST Arabidopsis thaliana protein match is: Got1-like family protein (TAIR:AT5G01430.1); Has 318 Blast hits to 318 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 137; Fungi - 75; Plants - 52; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT1G05785.2p  transcript_id AT1G05785.2  protein_id AT1G05785.2p  transcript_id AT1G05785.2  
At1g05790	chr1:001733039	0.0	W/1733039-1733299,1733478-1733616,1733778-1733892,1734114-1734214,1734671-1734792,1734866-1734957,1735112-1735217,1735496-1735650,1735938-1736044,1736152-1736273,1736355-1736452,1736532-1736731,1736835-1737201,1737287-1737365	AT1G05790.1  CDS  gene_syn T20M3.5, T20M3_5  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product lipase class 3 family protein  note lipase class 3 family protein; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: lipase class 3 family protein (TAIR:AT2G42450.1); Has 341 Blast hits to 338 proteins in 81 species: Archae - 0; Bacteria - 1; Metazoa - 150; Fungi - 32; Plants - 108; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT1G05790.1p  transcript_id AT1G05790.1  protein_id AT1G05790.1p  transcript_id AT1G05790.1  
At1g05790	chr1:001733996	0.0	W/1733996-1733997,1734114-1734214,1734671-1734792,1734866-1734957,1735112-1735217,1735496-1735650,1735938-1736044,1736152-1736273,1736355-1736452,1736532-1736731,1736835-1737201,1737287-1737365	AT1G05790.2  CDS  gene_syn T20M3.5, T20M3_5  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product lipase class 3 family protein  note lipase class 3 family protein; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: lipase class 3 family protein (TAIR:AT2G42450.1); Has 341 Blast hits to 338 proteins in 81 species: Archae - 0; Bacteria - 1; Metazoa - 150; Fungi - 32; Plants - 108; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT1G05790.2p  transcript_id AT1G05790.2  protein_id AT1G05790.2p  transcript_id AT1G05790.2  
At1g05800	chr1:001741204	0.0	W/1741204-1742619	AT1G05800.1  CDS  gene_syn DGL, DONGLE, T20M3.6  gene DGL  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product DGL (DONGLE); triacylglycerol lipase  note DONGLE (DGL); FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: lipase class 3 family protein (TAIR:AT2G31690.1); Has 707 Blast hits to 702 proteins in 150 species: Archae - 0; Bacteria - 106; Metazoa - 20; Fungi - 175; Plants - 281; Viruses - 3; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT1G05800.1p  transcript_id AT1G05800.1  protein_id AT1G05800.1p  transcript_id AT1G05800.1  
At1g05805	chr1:001744843	0.0	W/1744843-1745317,1746210-1746502,1746761-1746889,1747036-1747101,1747193-1747261,1747371-1747427	AT1G05805.1  CDS  go_component cytosol|GO:0005829|18433157|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT2G43140.1); Has 2445 Blast hits to 1444 proteins in 113 species: Archae - 2; Bacteria - 55; Metazoa - 778; Fungi - 140; Plants - 840; Viruses - 0; Other Eukaryotes - 630 (source: NCBI BLink).  protein_id AT1G05805.1p  transcript_id AT1G05805.1  protein_id AT1G05805.1p  transcript_id AT1G05805.1  
At1g05810	chr1:001748314	0.0	W/1748314-1748776,1749028-1749350	AT1G05810.1  CDS  gene_syn ARA, ARA-1, ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A5E, ATRAB11D, ATRABA5E, RAB GTPASE HOMOLOG A5E, RABA5E, T20M3.8, T20M3_8  gene RABA5E  go_component chloroplast|GO:0009507||IEA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product RABA5E (RAB GTPASE HOMOLOG A5E); GTP binding  note RAB GTPASE HOMOLOG A5E (RABA5E); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: AtRABA5d (Arabidopsis Rab GTPase homolog A5d); GTP binding (TAIR:AT2G31680.1); Has 22163 Blast hits to 22131 proteins in 622 species: Archae - 17; Bacteria - 101; Metazoa - 12424; Fungi - 2555; Plants - 2039; Viruses - 19; Other Eukaryotes - 5008 (source: NCBI BLink).  protein_id AT1G05810.1p  transcript_id AT1G05810.1  protein_id AT1G05810.1p  transcript_id AT1G05810.1  
At1g05820	chr1:001749776	0.0	W/1749776-1749913,1750362-1750520,1750628-1750739,1750856-1750975,1751115-1751272,1751527-1751706,1751931-1751965,1752074-1752230,1752503-1752556,1752638-1752730,1753098-1753240,1753393-1753547,1753661-1753767	AT1G05820.1  CDS  gene_syn T20M3.9, T20M3_9  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  go_function peptidase activity|GO:0008233||ISS  product aspartic-type endopeptidase/ peptidase  note aspartic-type endopeptidase/ peptidase; FUNCTIONS IN: peptidase activity, aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system, integral to membrane; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22B, signal peptide peptidase (InterPro:IPR007369); BEST Arabidopsis thaliana protein match is: protease-associated (PA) domain-containing protein (TAIR:AT2G43070.1); Has 1086 Blast hits to 1068 proteins in 167 species: Archae - 0; Bacteria - 39; Metazoa - 570; Fungi - 97; Plants - 225; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink).  protein_id AT1G05820.1p  transcript_id AT1G05820.1  protein_id AT1G05820.1p  transcript_id AT1G05820.1  
At1g05820	chr1:001749776	0.0	W/1749776-1749913,1750362-1750520,1750628-1750739,1750856-1750975,1751115-1751272,1751527-1751706,1751931-1751965,1752074-1752230,1752503-1752556,1752638-1752730,1753098-1753240,1753393-1753567	AT1G05820.2  CDS  gene_syn T20M3.9, T20M3_9  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  go_function peptidase activity|GO:0008233||ISS  product aspartic-type endopeptidase/ peptidase  note aspartic-type endopeptidase/ peptidase; FUNCTIONS IN: peptidase activity, aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system, integral to membrane; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22B, signal peptide peptidase (InterPro:IPR007369); BEST Arabidopsis thaliana protein match is: protease-associated (PA) domain-containing protein (TAIR:AT2G43070.1); Has 1017 Blast hits to 1005 proteins in 169 species: Archae - 0; Bacteria - 48; Metazoa - 507; Fungi - 90; Plants - 228; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).  protein_id AT1G05820.2p  transcript_id AT1G05820.2  protein_id AT1G05820.2p  transcript_id AT1G05820.2  
At1g05830	chr1:001754452	0.0	W/1754452-1755077,1755262-1755313,1755408-1755482,1755563-1755782,1756068-1756194,1756311-1756415,1756562-1756767,1756865-1756957,1757047-1757144,1757227-1757388,1757734-1757877,1757974-1758021,1758146-1758263,1758341-1758406,1758523-1758584,1758737-1758793,1758924-1758992,1759115-1759310,1759618-1759863,1760191-1760252,1760335-1760412,1760717-1760812,1760902-1761005,1761084-1761225	AT1G05830.1  CDS  gene_syn ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2, ATX2, SDG30, SET DOMAIN PROTEIN 30, T20M3.10, T20M3_10  gene ATX2  function Encodes a homolog of trithorax, a histone-lysine N-methyltransferase. Paralog of ATX1. Unlike ATX1 which is involved in trimethylating of histone H3-mysine 4, ATX2 is involved in dimethylating of histone H3-lysine 4. ATX1 and ATX2 influence the expression of largely nonoverlapping gene sets. The expression pattern of ATX2 is also different from that of ATX1.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process regulation of transcription|GO:0045449|18375658|IMP  go_process histone H3-K4 methylation|GO:0051568|18375658|IMP  go_function DNA binding|GO:0003677||ISS  go_function histone methyltransferase activity (H3-K4 specific)|GO:0042800|18375658|IMP  product ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2); DNA binding / histone methyltransferase(H3-K4 specific)  note ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2 (ATX2); FUNCTIONS IN: histone methyltransferase activity (H3-K4 specific), DNA binding; INVOLVED IN: histone H3-K4 methylation, regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: stigma, rosette leaf, male gametophyte, root; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), FY-rich, C-terminal (InterPro:IPR003889), Zinc finger, PHD-type (InterPro:IPR001965), FY-rich, N-terminal (InterPro:IPR003888), Post-SET zinc-binding region (InterPro:IPR003616), FY-rich, C-terminal subgroup (InterPro:IPR018516), PWWP (InterPro:IPR000313), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), FY-rich, N-terminal subgroup (InterPro:IPR018518); BEST Arabidopsis thaliana protein match is: ATX1 (ARABIDOPSIS HOMOLOGUE OF TRITHORAX); histone-lysine N-methyltransferase/ phosphatidylinositol-5-phosphate binding (TAIR:AT2G31650.1); Has 5236 Blast hits to 5137 proteins in 350 species: Archae - 2; Bacteria - 292; Metazoa - 2609; Fungi - 549; Plants - 651; Viruses - 0; Other Eukaryotes - 1133 (source: NCBI BLink).  protein_id AT1G05830.1p  transcript_id AT1G05830.1  protein_id AT1G05830.1p  transcript_id AT1G05830.1  
At1g05830	chr1:001754452	0.0	W/1754452-1755077,1755262-1755313,1755408-1755482,1755563-1755782,1756068-1756194,1756311-1756415,1756562-1756767,1756865-1756957,1757047-1757144,1757227-1757388,1757734-1757877,1757974-1758021,1758146-1758263,1758341-1758406,1758523-1758584,1758737-1758793,1758924-1758992,1759115-1759310,1759618-1759863,1760191-1760252,1760335-1760412,1760717-1760812,1760902-1761005,1761084-1761225	AT1G05830.2  CDS  gene_syn ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2, ATX2, SDG30, SET DOMAIN PROTEIN 30, T20M3.10, T20M3_10  gene ATX2  function Encodes a homolog of trithorax, a histone-lysine N-methyltransferase. Paralog of ATX1. Unlike ATX1 which is involved in trimethylating of histone H3-mysine 4, ATX2 is involved in dimethylating of histone H3-lysine 4. ATX1 and ATX2 influence the expression of largely nonoverlapping gene sets. The expression pattern of ATX2 is also different from that of ATX1.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process regulation of transcription|GO:0045449|18375658|IMP  go_process histone H3-K4 methylation|GO:0051568|18375658|IMP  go_function DNA binding|GO:0003677||ISS  go_function histone methyltransferase activity (H3-K4 specific)|GO:0042800|18375658|IMP  product ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2); DNA binding / histone methyltransferase(H3-K4 specific)  note ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2 (ATX2); FUNCTIONS IN: histone methyltransferase activity (H3-K4 specific), DNA binding; INVOLVED IN: histone H3-K4 methylation, regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: stigma, rosette leaf, male gametophyte, root; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), FY-rich, C-terminal (InterPro:IPR003889), Zinc finger, PHD-type (InterPro:IPR001965), FY-rich, N-terminal (InterPro:IPR003888), Post-SET zinc-binding region (InterPro:IPR003616), FY-rich, C-terminal subgroup (InterPro:IPR018516), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), PWWP (InterPro:IPR000313), FY-rich, N-terminal subgroup (InterPro:IPR018518); BEST Arabidopsis thaliana protein match is: ATX1 (ARABIDOPSIS HOMOLOGUE OF TRITHORAX); histone-lysine N-methyltransferase/ phosphatidylinositol-5-phosphate binding (TAIR:AT2G31650.1); Has 5236 Blast hits to 5137 proteins in 350 species: Archae - 2; Bacteria - 292; Metazoa - 2609; Fungi - 549; Plants - 651; Viruses - 0; Other Eukaryotes - 1133 (source: NCBI BLink).  protein_id AT1G05830.2p  transcript_id AT1G05830.2  protein_id AT1G05830.2p  transcript_id AT1G05830.2  
At1g05835	chr1:001762248	0.0	W/1762248-1762308,1762380-1762702	AT1G05835.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32583.1); Has 50 Blast hits to 50 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05835.1p  transcript_id AT1G05835.1  protein_id AT1G05835.1p  transcript_id AT1G05835.1  
At1g05840	chr1:001765918	0.0	C/1765918-1766150,1765631-1765760,1765301-1765548,1764367-1764594,1763953-1764115,1763804-1763877,1763541-1763628,1763344-1763419,1763091-1763162,1762843-1762988	AT1G05840.1  CDS  gene_syn T20M3.11, T20M3_11  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT3G02740.1); Has 2039 Blast hits to 2022 proteins in 216 species: Archae - 0; Bacteria - 0; Metazoa - 414; Fungi - 414; Plants - 1048; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).  protein_id AT1G05840.1p  transcript_id AT1G05840.1  protein_id AT1G05840.1p  transcript_id AT1G05840.1  
At1g05850	chr1:001767730	0.0	C/1767730-1768117,1767352-1767511,1766833-1767250	AT1G05850.1  CDS  gene_syn CHITINASE-LIKE PROTEIN 1, CTL1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC ROOT HAIR 2, ELP, ELP1, ERH2, HOT2, POM-POM1, POM1, SENSITIVE TO HOT TEMPERATURES 2, T20M3.12, T20M3_12  gene POM1  function Encodes an endo chitinase-like protein AtCTL1. Essential for tolerance to heat, salt and drought stresses. Also involved in root hair development, cell expansion and response to cytokinin. Allelic to erh2. 11 alleles described in Hauser (1995). Mutant is defective in acquired thermotolerance, appears semidwarf throughout its life cycle and has extra lateral branches. There are two EMS alleles. Expression of AtHSP101 is not affected in the mutants.  go_component endomembrane system|GO:0012505||IEA  go_function chitinase activity|GO:0004568||IEA  go_process response to heat|GO:0009408|10760305|IMP  go_process response to water deprivation|GO:0009414|17156413|IMP  go_process response to salt stress|GO:0009651|17156413|IMP  go_process response to cytokinin stimulus|GO:0009735|11678273|IMP  go_process lignin biosynthetic process|GO:0009809|16159327|IGI  go_process multidimensional cell growth|GO:0009825|7743935|IMP  go_process root epidermal cell differentiation|GO:0010053|9165126|IMP  go_process regulation of salicylic acid metabolic process|GO:0010337|17156413|IMP  go_process carbohydrate biosynthetic process|GO:0016051|16159327|IGI  go_function chitinase activity|GO:0004568||ISS  product POM1 (POM-POM1); chitinase  note POM-POM1 (POM1); FUNCTIONS IN: chitinase activity; INVOLVED IN: in 9 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 19 (InterPro:IPR016283), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: chitinase (TAIR:AT3G16920.1); Has 1331 Blast hits to 1327 proteins in 313 species: Archae - 0; Bacteria - 305; Metazoa - 33; Fungi - 2; Plants - 970; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G05850.1p  transcript_id AT1G05850.1  protein_id AT1G05850.1p  transcript_id AT1G05850.1  
At1g05860	chr1:001769061	0.0	W/1769061-1769638,1770085-1770349	AT1G05860.1  CDS  gene_syn T20M3.13, T20M3_13  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31600.1); Has 51 Blast hits to 50 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 2; Plants - 26; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G05860.1p  transcript_id AT1G05860.1  protein_id AT1G05860.1p  transcript_id AT1G05860.1  
At1g05870	chr1:001772739	0.0	C/1772739-1773228,1772454-1772533	AT1G05870.1  CDS  gene_syn T20M3.14, T20M3_14  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31560.2); Has 124 Blast hits to 124 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05870.1p  transcript_id AT1G05870.1  protein_id AT1G05870.1p  transcript_id AT1G05870.1  
At1g05870	chr1:001772739	0.0	C/1772739-1773228,1772454-1772533	AT1G05870.2  CDS  gene_syn T20M3.14, T20M3_14  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31560.2); Has 124 Blast hits to 124 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05870.2p  transcript_id AT1G05870.2  protein_id AT1G05870.2p  transcript_id AT1G05870.2  
At1g05880	chr1:001775655	0.0	W/1775655-1775887,1775985-1776084,1776185-1776275,1776357-1776553,1776687-1776770,1776845-1776894,1776988-1777095,1777195-1777273,1777358-1777438,1777525-1777569,1777653-1777724,1777824-1777923,1778000-1778126,1778228-1778330	AT1G05880.1  CDS  gene_syn T20M3.15, T20M3_15  go_component tight junction|GO:0005923||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function structural molecule activity|GO:0005198||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product nucleic acid binding / protein binding / structural molecule/ zinc ion binding  note nucleic acid binding / protein binding / structural molecule/ zinc ion binding; FUNCTIONS IN: protein binding, structural molecule activity, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: tight junction; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C6HC-type (InterPro:IPR002867), Claudin, conserved site (InterPro:IPR017974), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7) (TAIR:AT2G31510.1); Has 1062 Blast hits to 1057 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 571; Fungi - 100; Plants - 172; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).  protein_id AT1G05880.1p  transcript_id AT1G05880.1  protein_id AT1G05880.1p  transcript_id AT1G05880.1  
At1g05890	chr1:001779631	0.0	W/1779631-1779786,1780174-1780298,1780526-1780631,1780720-1780810,1781087-1781259,1781695-1781799,1781927-1782015,1782191-1782298,1782454-1782544,1782650-1782739,1782821-1782868,1783162-1783233,1783319-1783412,1783502-1783628,1783983-1784166	AT1G05890.1  CDS  gene_syn T20M3.16, T20M3_16  go_function nucleic acid binding|GO:0003676||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger protein-related  note zinc finger protein-related; FUNCTIONS IN: protein binding, zinc ion binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7) (TAIR:AT2G31510.1); Has 2323 Blast hits to 2304 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 1138; Fungi - 377; Plants - 363; Viruses - 5; Other Eukaryotes - 440 (source: NCBI BLink).  protein_id AT1G05890.1p  transcript_id AT1G05890.1  protein_id AT1G05890.1p  transcript_id AT1G05890.1  
At1g05894	chr1:001784831	0.0	W/1784831-1786204	AT1G05894.1  CDS  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31480.1); Has 46 Blast hits to 38 proteins in 14 species: Archae - 0; Bacteria - 15; Metazoa - 5; Fungi - 2; Plants - 7; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G05894.1p  transcript_id AT1G05894.1  protein_id AT1G05894.1p  transcript_id AT1G05894.1  
At1g05900	chr1:001786896	0.0	W/1786896-1787043,1787148-1787266,1787451-1787517,1787617-1787688,1787786-1787910,1788222-1788288,1788415-1788506,1788697-1788834,1788921-1789025,1789162-1789245,1789359-1789502	AT1G05900.2  CDS  gene_syn T20M3.18, T20M3_18  go_component intracellular|GO:0005622||IEA  go_process DNA repair|GO:0006281||IEA  go_process base-excision repair|GO:0006284||IEA  go_function DNA binding|GO:0003677||IEA  go_function catalytic activity|GO:0003824||IEA  go_function endonuclease activity|GO:0004519||IEA  go_function sequence-specific DNA binding|GO:0043565||IEA  go_function 4 iron, 4 sulfur cluster binding|GO:0051539||IEA  go_process base-excision repair|GO:0006284||ISS  product endonuclease-related  note endonuclease-related; FUNCTIONS IN: 4 iron, 4 sulfur cluster binding, sequence-specific DNA binding, DNA binding, catalytic activity, endonuclease activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: intracellular; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), Endonuclease III-like, iron-sulphur cluster loop (InterPro:IPR003651), Endonuclease III, conserved site-2 (InterPro:IPR004036), Helix-hairpin-helix motif (InterPro:IPR000445), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: endonuclease-related (TAIR:AT2G31450.1); Has 9734 Blast hits to 9731 proteins in 1448 species: Archae - 228; Bacteria - 5250; Metazoa - 197; Fungi - 131; Plants - 86; Viruses - 0; Other Eukaryotes - 3842 (source: NCBI BLink).  protein_id AT1G05900.2p  transcript_id AT1G05900.2  protein_id AT1G05900.2p  transcript_id AT1G05900.2  
At1g05900	chr1:001786896	0.0	W/1786896-1787043,1787148-1787266,1787451-1787517,1787617-1787688,1787786-1787910,1788222-1788288,1788415-1788506,1788697-1788834,1788921-1789037	AT1G05900.1  CDS  gene_syn T20M3.18, T20M3_18  go_component intracellular|GO:0005622||IEA  go_process DNA repair|GO:0006281||IEA  go_process base-excision repair|GO:0006284||IEA  go_function DNA binding|GO:0003677||IEA  go_function catalytic activity|GO:0003824||IEA  go_function endonuclease activity|GO:0004519||IEA  go_function sequence-specific DNA binding|GO:0043565||IEA  go_process base-excision repair|GO:0006284||ISS  product endonuclease-related  note endonuclease-related; FUNCTIONS IN: sequence-specific DNA binding, DNA binding, catalytic activity, endonuclease activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: intracellular; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), Endonuclease III, conserved site-2 (InterPro:IPR004036), Helix-hairpin-helix motif (InterPro:IPR000445), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: endonuclease-related (TAIR:AT2G31450.1); Has 8162 Blast hits to 8160 proteins in 1420 species: Archae - 209; Bacteria - 4407; Metazoa - 108; Fungi - 108; Plants - 45; Viruses - 0; Other Eukaryotes - 3285 (source: NCBI BLink).  protein_id AT1G05900.1p  transcript_id AT1G05900.1  protein_id AT1G05900.1p  transcript_id AT1G05900.1  
At1g05910	chr1:001790796	0.0	W/1790796-1791023,1791310-1791411,1791518-1793341,1793423-1793611,1793759-1793895,1794410-1794652,1795071-1795257,1795528-1795593,1795706-1795955,1796097-1796503	AT1G05910.1  CDS  gene_syn T20M3.19, T20M3_19  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATP binding|GO:0005524||ISS  product cell division cycle protein 48-related / CDC48-related  note cell division cycle protein 48-related / CDC48-related; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT3G15120.1); Has 58172 Blast hits to 33052 proteins in 1905 species: Archae - 899; Bacteria - 20022; Metazoa - 15513; Fungi - 5463; Plants - 2603; Viruses - 554; Other Eukaryotes - 13118 (source: NCBI BLink).  protein_id AT1G05910.1p  transcript_id AT1G05910.1  protein_id AT1G05910.1p  transcript_id AT1G05910.1  
At1g05920	chr1:001797044	0.0	W/1797044-1797991	AT1G05920.1  CDS  gene_syn T20M3.20, T20M3_20  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508), Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT3G24850.1); Has 117 Blast hits to 106 proteins in 18 species: Archae - 0; Bacteria - 7; Metazoa - 15; Fungi - 8; Plants - 62; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT1G05920.1p  transcript_id AT1G05920.1  protein_id AT1G05920.1p  transcript_id AT1G05920.1  
At1g05925	chr1:001798901	0.0	C/1798901-1799062	AT1G05925.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G05925.1p  transcript_id AT1G05925.1  protein_id AT1G05925.1p  transcript_id AT1G05925.1  
At1g05930	chr1:001799418	0.0	W/1799418-1800289,1800849-1800933	AT1G05930.1  CDS  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508), Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT3G24850.1); Has 52 Blast hits to 52 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05930.1p  transcript_id AT1G05930.1  protein_id AT1G05930.1p  transcript_id AT1G05930.1  
At1g05940	chr1:001803693	0.0	C/1803693-1803942,1803198-1803607,1802942-1803118,1802646-1802870,1802357-1802533,1802024-1802260,1801579-1801674,1801365-1801502	AT1G05940.1  CDS  gene_syn CAT9, CATIONIC AMINO ACID TRANSPORTER 9, T21E18.1, T21E18_1  gene CAT9  function Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters.  go_component plasma membrane|GO:0005886|17151019|IDA  go_process transport|GO:0006810||IEA  go_process amino acid transport|GO:0006865||IEA  go_function cationic amino acid transmembrane transporter activity|GO:0015326||ISS  product CAT9 (CATIONIC AMINO ACID TRANSPORTER 9); cationic amino acid transmembrane transporter  note CATIONIC AMINO ACID TRANSPORTER 9 (CAT9); FUNCTIONS IN: cationic amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport, transport; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cationic amino acid transporter (InterPro:IPR015606), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease-associated region (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: CAT4 (CATIONIC AMINO ACID TRANSPORTER 4); cationic amino acid transmembrane transporter (TAIR:AT3G03720.1); Has 18735 Blast hits to 18518 proteins in 1295 species: Archae - 308; Bacteria - 13721; Metazoa - 1647; Fungi - 1665; Plants - 214; Viruses - 0; Other Eukaryotes - 1180 (source: NCBI BLink).  protein_id AT1G05940.1p  transcript_id AT1G05940.1  protein_id AT1G05940.1p  transcript_id AT1G05940.1  
At1g05950	chr1:001807307	0.0	C/1807307-1807471,1806763-1807198,1806538-1806685,1805964-1806117,1805667-1805879,1805369-1805584,1805187-1805253,1804952-1805106,1804816-1804882,1804573-1804724	AT1G05950.1  CDS  gene_syn T21E18.2, T21E18_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; Has 25 Blast hits to 20 proteins in 9 species: Archae - 3; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G05950.1p  transcript_id AT1G05950.1  protein_id AT1G05950.1p  transcript_id AT1G05950.1  
At1g05960	chr1:001814926	0.0	C/1814926-1815060,1814659-1814733,1814447-1814562,1814144-1814258,1813927-1814055,1813386-1813433,1813134-1813288,1812833-1813029,1812450-1812739,1811608-1811757,1811163-1811516,1810872-1811021,1810506-1810581,1809813-1809940,1809506-1809700,1809222-1809362,1809019-1809153,1808736-1808936,1808478-1808636	AT1G05960.1  CDS  gene_syn T21E18.21, T21E18_21  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: cyclin-related (TAIR:AT2G41830.1); Has 273 Blast hits to 272 proteins in 104 species: Archae - 0; Bacteria - 5; Metazoa - 121; Fungi - 80; Plants - 62; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G05960.1p  transcript_id AT1G05960.1  protein_id AT1G05960.1p  transcript_id AT1G05960.1  
At1g05960	chr1:001814926	0.0	C/1814926-1815060,1814659-1814733,1814447-1814562,1814328-1814390,1814144-1814258,1813927-1814055,1813386-1813433,1813134-1813288,1812833-1813029,1812450-1812739,1811608-1811757,1811163-1811516,1810872-1811021,1810506-1810581,1809813-1809940,1809506-1809700,1809222-1809362,1809019-1809153,1808736-1808936,1808478-1808636	AT1G05960.2  CDS  gene_syn T21E18.21, T21E18_21  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: cyclin-related (TAIR:AT2G41830.1).  protein_id AT1G05960.2p  transcript_id AT1G05960.2  protein_id AT1G05960.2p  transcript_id AT1G05960.2  
At1g05970	chr1:001816545	0.0	C/1816545-1816991,1816253-1816402	AT1G05970.1  CDS  gene_syn T21E18.3, T21E18_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 40 Blast hits to 40 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05970.1p  transcript_id AT1G05970.1  protein_id AT1G05970.1p  transcript_id AT1G05970.1  
At1g05970	chr1:001816545	0.0	C/1816545-1816991,1816253-1816408	AT1G05970.2  CDS  gene_syn T21E18.3, T21E18_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 43 Blast hits to 43 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05970.2p  transcript_id AT1G05970.2  protein_id AT1G05970.2p  transcript_id AT1G05970.2  
At1g05980	chr1:001817400	0.0	W/1817400-1817471	AT1G05980.1  tRNA  gene_syn 51952.TRNA-THR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Thr (anticodon: TGT)  transcript_id AT1G05980.1  
At1g05990	chr1:001818588	0.0	W/1818588-1819040	AT1G05990.1  CDS  gene_syn T21E18.4, T21E18_4  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding protein, putative  note calcium-binding protein, putative; FUNCTIONS IN: calcium ion binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Parvalbumin (InterPro:IPR008080), EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding protein, putative (TAIR:AT4G03290.1); Has 21203 Blast hits to 14804 proteins in 1337 species: Archae - 0; Bacteria - 147; Metazoa - 10158; Fungi - 3748; Plants - 3682; Viruses - 0; Other Eukaryotes - 3468 (source: NCBI BLink).  protein_id AT1G05990.1p  transcript_id AT1G05990.1  protein_id AT1G05990.1p  transcript_id AT1G05990.1  
At1g06000	chr1:001820495	0.0	C/1820495-1821802	AT1G06000.1  CDS  gene_syn T21E18.5, T21E18_5  function encodes a flavonol-7-O-rhamnosyltransferase involved in the formation of rhamnosylated flavonols  go_component cellular_component|GO:0005575||ND  go_process flavonol biosynthetic process|GO:0051555|17314094|IDA  go_function UDP-glycosyltransferase activity|GO:0008194|17314094|IDA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: flavonol biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT89B1 (UDP-GLUCOSYL TRANSFERASE 89B1); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ quercetin 4 -O-glucosyltransferase/ quercetin 7-O-glucosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT1G73880.1); Has 3254 Blast hits to 3210 proteins in 234 species: Archae - 0; Bacteria - 69; Metazoa - 492; Fungi - 11; Plants - 2628; Viruses - 40; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G06000.1p  transcript_id AT1G06000.1  protein_id AT1G06000.1p  transcript_id AT1G06000.1  
At1g06010	chr1:001823347	0.0	W/1823347-1823410,1823498-1823670	AT1G06010.1  CDS  gene_syn T21E18.6, T21E18_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 15 Blast hits to 15 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G06010.1p  transcript_id AT1G06010.1  protein_id AT1G06010.1p  transcript_id AT1G06010.1  
At1g06020	chr1:001824548	0.0	W/1824548-1824949,1825314-1825646,1825725-1825841,1825916-1826101	AT1G06020.1  CDS  gene_syn T21E18.7, T21E18_7  go_process sucrose biosynthetic process|GO:0005986||IEA  go_process D-ribose metabolic process|GO:0006014||IEA  go_process sucrose catabolic process, using beta-fructofuranosidase|GO:0019575||IEA  go_process acetate fermentation|GO:0019654||IEA  go_function ribokinase activity|GO:0004747||IEA  go_function kinase activity|GO:0016301||ISS  product pfkB-type carbohydrate kinase family protein  note pfkB-type carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process, acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase; EXPRESSED IN: embryo; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-type carbohydrate kinase family protein (TAIR:AT1G06030.1); Has 11946 Blast hits to 11944 proteins in 1309 species: Archae - 220; Bacteria - 7571; Metazoa - 137; Fungi - 87; Plants - 279; Viruses - 0; Other Eukaryotes - 3652 (source: NCBI BLink).  protein_id AT1G06020.1p  transcript_id AT1G06020.1  protein_id AT1G06020.1p  transcript_id AT1G06020.1  
At1g06030	chr1:001826880	0.0	W/1826880-1827284,1827374-1827706,1827798-1827914,1827996-1828130	AT1G06030.1  CDS  gene_syn T21E18.8, T21E18_8  go_process sucrose biosynthetic process|GO:0005986||IEA  go_process D-ribose metabolic process|GO:0006014||IEA  go_process sucrose catabolic process, using beta-fructofuranosidase|GO:0019575||IEA  go_process acetate fermentation|GO:0019654||IEA  go_function ribokinase activity|GO:0004747||IEA  go_function kinase activity|GO:0016301||ISS  product pfkB-type carbohydrate kinase family protein  note pfkB-type carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process, acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-type carbohydrate kinase family protein (TAIR:AT1G06020.1); Has 11612 Blast hits to 11610 proteins in 1303 species: Archae - 214; Bacteria - 7383; Metazoa - 126; Fungi - 79; Plants - 260; Viruses - 0; Other Eukaryotes - 3550 (source: NCBI BLink).  protein_id AT1G06030.1p  transcript_id AT1G06030.1  protein_id AT1G06030.1p  transcript_id AT1G06030.1  
At1g06040	chr1:001829477	0.0	C/1829477-1829659,1828957-1829307	AT1G06040.2  CDS  gene_syn SALT TOLERANCE, STO, T21E18.9, T21E18_9  gene STO  function Encodes salt tolerance protein (STO) which confers salt tolerance to yeast cells. Fully complements calcineurin deficient yeast but does not encode a phosphoprotein phosphatase. Sequence has similarities to CONSTANS. STO co-localizes with COP1 and plays a role in light signaling.  go_component nucleus|GO:0005634|17605755|IDA  go_process response to light stimulus|GO:0009416|17605755|IEP  go_process photomorphogenesis|GO:0009640|17605755|IGI  go_process response to salt stress|GO:0009651|8662738|IGI  go_function DNA binding|GO:0003677|8662738|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein binding|GO:0005515|11018516|IPI  go_function zinc ion binding|GO:0008270||ISS  product STO (SALT TOLERANCE); DNA binding / protein binding / transcription factor/ zinc ion binding  note SALT TOLERANCE (STO); FUNCTIONS IN: protein binding, transcription factor activity, DNA binding, zinc ion binding; INVOLVED IN: response to salt stress, response to light stimulus, photomorphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: STH; protein domain specific binding / transcription factor/ zinc ion binding (TAIR:AT2G31380.1); Has 1274 Blast hits to 882 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 1189; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT1G06040.2p  transcript_id AT1G06040.2  protein_id AT1G06040.2p  transcript_id AT1G06040.2  
At1g06040	chr1:001829477	0.0	C/1829477-1829659,1828987-1829307,1828662-1828904	AT1G06040.1  CDS  gene_syn SALT TOLERANCE, STO, T21E18.9, T21E18_9  gene STO  function Encodes salt tolerance protein (STO) which confers salt tolerance to yeast cells. Fully complements calcineurin deficient yeast but does not encode a phosphoprotein phosphatase. Sequence has similarities to CONSTANS. STO co-localizes with COP1 and plays a role in light signaling.  go_component nucleus|GO:0005634|17605755|IDA  go_process response to light stimulus|GO:0009416|17605755|IEP  go_process photomorphogenesis|GO:0009640|17605755|IGI  go_process response to salt stress|GO:0009651|8662738|IGI  go_function DNA binding|GO:0003677|8662738|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein binding|GO:0005515|11018516|IPI  go_function zinc ion binding|GO:0008270||ISS  product STO (SALT TOLERANCE); DNA binding / protein binding / transcription factor/ zinc ion binding  note SALT TOLERANCE (STO); FUNCTIONS IN: protein binding, transcription factor activity, DNA binding, zinc ion binding; INVOLVED IN: response to salt stress, response to light stimulus, photomorphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: STH; protein domain specific binding / transcription factor/ zinc ion binding (TAIR:AT2G31380.1); Has 1274 Blast hits to 884 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 1187; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT1G06040.1p  transcript_id AT1G06040.1  protein_id AT1G06040.1p  transcript_id AT1G06040.1  
At1g06050	chr1:001830726	0.0	C/1830726-1831667	AT1G06050.1  CDS  gene_syn T21E18.10, T21E18_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10750.1); Has 180 Blast hits to 179 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 169; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G06050.1p  transcript_id AT1G06050.1  protein_id AT1G06050.1p  transcript_id AT1G06050.1  
At1g06060	chr1:001833071	0.0	W/1833071-1833097,1833420-1833561,1833655-1833802,1833886-1833961,1834069-1834180,1834275-1834366,1834472-1834516	AT1G06060.1  CDS  gene_syn T21E18.11, T21E18_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product RanBPM-related  note RanBPM-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), CT11-RanBPM (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61150.6); Has 659 Blast hits to 568 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 401; Fungi - 95; Plants - 120; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT1G06060.1p  transcript_id AT1G06060.1  protein_id AT1G06060.1p  transcript_id AT1G06060.1  
At1g06070	chr1:001836470	0.0	C/1836470-1837116,1836114-1836246,1835945-1836029,1835201-1835607	AT1G06070.1  CDS  gene_syn T21E18.12, T21E18_12  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  product bZIP transcription factor, putative (bZIP69)  note bZIP transcription factor, putative (bZIP69); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP transcription factor (POSF21) (TAIR:AT2G31370.5); Has 38161 Blast hits to 16134 proteins in 672 species: Archae - 6; Bacteria - 1085; Metazoa - 14914; Fungi - 4009; Plants - 2167; Viruses - 428; Other Eukaryotes - 15552 (source: NCBI BLink).  protein_id AT1G06070.1p  transcript_id AT1G06070.1  protein_id AT1G06070.1p  transcript_id AT1G06070.1  
At1g06080	chr1:001843661	0.0	W/1843661-1843990,1844629-1844769,1844846-1844986,1845102-1845208,1845895-1846093	AT1G06080.1  CDS  gene_syn ADS1, DELTA 9 DESATURASE, DELTA 9 DESATURASE 1, T21E18.13, T21E18_13  gene ADS1  function homologous to delta 9 acyl-lipid desaturases of cyanobacteria and acyl-CoA desaturases of yeast and mammals. expression down-regulated by cold temperature.  go_process lipid metabolic process|GO:0006629||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product ADS1 (DELTA 9 DESATURASE 1); oxidoreductase  note DELTA 9 DESATURASE 1 (ADS1); FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: lipid metabolic process; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1, core (InterPro:IPR015876), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: ADS2 (16:0Delta9 Arabidopsis desaturase 2); oxidoreductase (TAIR:AT2G31360.1); Has 2722 Blast hits to 2722 proteins in 596 species: Archae - 0; Bacteria - 1080; Metazoa - 690; Fungi - 150; Plants - 71; Viruses - 3; Other Eukaryotes - 728 (source: NCBI BLink).  protein_id AT1G06080.1p  transcript_id AT1G06080.1  protein_id AT1G06080.1p  transcript_id AT1G06080.1  
At1g06090	chr1:001847921	0.0	W/1847921-1848232,1848316-1848456,1848589-1848729,1849109-1849215,1849302-1849500	AT1G06090.1  CDS  gene_syn T21E18.14, T21E18_14  go_process lipid metabolic process|GO:0006629||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product fatty acid desaturase family protein  note fatty acid desaturase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1, core (InterPro:IPR015876), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: fatty acid desaturase family protein (TAIR:AT1G06120.1); Has 2699 Blast hits to 2699 proteins in 596 species: Archae - 0; Bacteria - 1084; Metazoa - 686; Fungi - 152; Plants - 71; Viruses - 3; Other Eukaryotes - 703 (source: NCBI BLink).  protein_id AT1G06090.1p  transcript_id AT1G06090.1  protein_id AT1G06090.1p  transcript_id AT1G06090.1  
At1g06100	chr1:001851530	0.0	W/1851530-1851841,1851957-1852097,1852223-1852363,1852612-1852718,1852821-1853019	AT1G06100.1  CDS  gene_syn T21E18.15, T21E18_15  go_process lipid metabolic process|GO:0006629||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product fatty acid desaturase family protein  note fatty acid desaturase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: lipid metabolic process; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1, core (InterPro:IPR015876), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: fatty acid desaturase family protein (TAIR:AT1G06090.1); Has 2703 Blast hits to 2703 proteins in 596 species: Archae - 0; Bacteria - 1082; Metazoa - 693; Fungi - 152; Plants - 71; Viruses - 3; Other Eukaryotes - 702 (source: NCBI BLink).  protein_id AT1G06100.1p  transcript_id AT1G06100.1  protein_id AT1G06100.1p  transcript_id AT1G06100.1  
At1g06110	chr1:001854735	0.0	C/1854735-1854938,1853915-1854616,1853615-1853833,1853405-1853511,1853237-1853315	AT1G06110.1  CDS  gene_syn SKIP16, SKP1/ASK-interacting protein 16, T21E18.16, T21E18_16  gene SKIP16  go_component SCF ubiquitin ligase complex|GO:0019005|12795696|IPI  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515|12795696|IPI  product SKIP16 (SKP1/ASK-interacting protein 16); protein binding  note SKP1/ASK-interacting protein 16 (SKIP16); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: SCF ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ApaG (InterPro:IPR007474); Has 1427 Blast hits to 1427 proteins in 496 species: Archae - 0; Bacteria - 836; Metazoa - 173; Fungi - 41; Plants - 47; Viruses - 0; Other Eukaryotes - 330 (source: NCBI BLink).  protein_id AT1G06110.1p  transcript_id AT1G06110.1  protein_id AT1G06110.1p  transcript_id AT1G06110.1  
At1g06120	chr1:001855963	0.0	W/1855963-1856274,1856355-1856495,1856623-1856763,1857125-1857231,1857318-1857516	AT1G06120.1  CDS  gene_syn T21E18.17, T21E18_17  go_process lipid metabolic process|GO:0006629||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product fatty acid desaturase family protein  note fatty acid desaturase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: lipid metabolic process; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1, core (InterPro:IPR015876), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: fatty acid desaturase family protein (TAIR:AT1G06090.1); Has 2696 Blast hits to 2696 proteins in 596 species: Archae - 0; Bacteria - 1082; Metazoa - 689; Fungi - 152; Plants - 71; Viruses - 3; Other Eukaryotes - 699 (source: NCBI BLink).  protein_id AT1G06120.1p  transcript_id AT1G06120.1  protein_id AT1G06120.1p  transcript_id AT1G06120.1  
At1g06130	chr1:001860587	0.0	C/1860587-1860640,1859980-1860162,1859561-1859764,1859329-1859452,1858693-1858793,1858518-1858592,1858334-1858432,1858034-1858186	AT1G06130.2  CDS  gene_syn GLX2-4, T21E18.18, T21E18_18, glyoxalase 2-4  gene GLX2-4  go_component chloroplast|GO:0009507|18431481|IDA  go_function zinc ion binding|GO:0008270||IEA  go_function hydrolase activity|GO:0016787||IEA  go_process methylglyoxal catabolic process to D-lactate|GO:0019243||ISS  go_function hydroxyacylglutathione hydrolase activity|GO:0004416||ISS  product GLX2-4 (glyoxalase 2-4); hydrolase/ hydroxyacylglutathione hydrolase/ zinc ion binding  note glyoxalase 2-4 (GLX2-4); FUNCTIONS IN: hydrolase activity, hydroxyacylglutathione hydrolase activity, zinc ion binding; INVOLVED IN: methylglyoxal catabolic process to D-lactate; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279), Hydroxyacylglutathione hydrolase (InterPro:IPR017782); BEST Arabidopsis thaliana protein match is: GLX2-5 (GLYOXALASE 2-5); hydroxyacylglutathione hydrolase/ iron ion binding / zinc ion binding (TAIR:AT2G31350.2); Has 10411 Blast hits to 10410 proteins in 1392 species: Archae - 227; Bacteria - 5410; Metazoa - 429; Fungi - 200; Plants - 123; Viruses - 0; Other Eukaryotes - 4022 (source: NCBI BLink).  protein_id AT1G06130.2p  transcript_id AT1G06130.2  protein_id AT1G06130.2p  transcript_id AT1G06130.2  
At1g06130	chr1:001860587	0.0	C/1860587-1860640,1859980-1860165,1859561-1859764,1859329-1859452,1858693-1858793,1858518-1858592,1858334-1858432,1858034-1858186	AT1G06130.1  CDS  gene_syn GLX2-4, T21E18.18, T21E18_18, glyoxalase 2-4  gene GLX2-4  go_component chloroplast|GO:0009507|18431481|IDA  go_function zinc ion binding|GO:0008270||IEA  go_function hydrolase activity|GO:0016787||IEA  go_process methylglyoxal catabolic process to D-lactate|GO:0019243||ISS  go_function hydroxyacylglutathione hydrolase activity|GO:0004416||ISS  product GLX2-4 (glyoxalase 2-4); hydrolase/ hydroxyacylglutathione hydrolase/ zinc ion binding  note glyoxalase 2-4 (GLX2-4); FUNCTIONS IN: hydrolase activity, hydroxyacylglutathione hydrolase activity, zinc ion binding; INVOLVED IN: methylglyoxal catabolic process to D-lactate; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279), Hydroxyacylglutathione hydrolase (InterPro:IPR017782); BEST Arabidopsis thaliana protein match is: GLX2-5 (GLYOXALASE 2-5); hydroxyacylglutathione hydrolase/ iron ion binding / zinc ion binding (TAIR:AT2G31350.1); Has 10413 Blast hits to 10412 proteins in 1392 species: Archae - 227; Bacteria - 5412; Metazoa - 429; Fungi - 200; Plants - 123; Viruses - 0; Other Eukaryotes - 4022 (source: NCBI BLink).  protein_id AT1G06130.1p  transcript_id AT1G06130.1  protein_id AT1G06130.1p  transcript_id AT1G06130.1  
At1g06135	chr1:001862307	0.0	W/1862307-1862516	AT1G06135.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31345.1); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G06135.1p  transcript_id AT1G06135.1  protein_id AT1G06135.1p  transcript_id AT1G06135.1  
At1g06137	chr1:001863544	0.0	C/1863544-1863750	AT1G06137.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06135.1); Has 10 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G06137.1p  transcript_id AT1G06137.1  protein_id AT1G06137.1p  transcript_id AT1G06137.1  
At1g06140	chr1:001864796	0.0	W/1864796-1866472	AT1G06140.1  CDS  gene_syn T21E18.19, T21E18_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: EMB2758 (embryo defective 2758) (TAIR:AT4G33990.1); Has 13889 Blast hits to 4898 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 52; Plants - 13470; Viruses - 0; Other Eukaryotes - 263 (source: NCBI BLink).  protein_id AT1G06140.1p  transcript_id AT1G06140.1  protein_id AT1G06140.1p  transcript_id AT1G06140.1  
At1g06145	chr1:001867129	0.0	C/1867129-1868862	AT1G06145.1  CDS  gene_syn EMB1444, EMBRYO DEFECTIVE 1444  gene EMB1444  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product EMB1444 (EMBRYO DEFECTIVE 1444)  note EMBRYO DEFECTIVE 1444 (EMB1444); INVOLVED IN: embryonic development ending in seed dormancy; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G66520.1); Has 13972 Blast hits to 5050 proteins in 152 species: Archae - 1; Bacteria - 4; Metazoa - 54; Fungi - 73; Plants - 13519; Viruses - 0; Other Eukaryotes - 321 (source: NCBI BLink).  protein_id AT1G06145.1p  transcript_id AT1G06145.1  protein_id AT1G06145.1p  transcript_id AT1G06145.1  
At1g06150	chr1:001873100	0.0	C/1873100-1873194,1872745-1872888,1872350-1872431,1872226-1872267,1871914-1871973,1871667-1871786,1870367-1871575,1870157-1870258,1869863-1870003,1869599-1869724,1869228-1869311	AT1G06150.1  CDS  gene_syn T21E18.20, T21E18_20  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) protein-related (TAIR:AT2G31280.1); Has 378 Blast hits to 227 proteins in 45 species: Archae - 0; Bacteria - 25; Metazoa - 54; Fungi - 12; Plants - 201; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT1G06150.1p  transcript_id AT1G06150.1  protein_id AT1G06150.1p  transcript_id AT1G06150.1  
At1g06149	chr1:001873360	0.0	C/1873360-1873464	AT1G06149.1  CDS  gene_syn CPuORF8, Conserved peptide upstream open reading frame 8  gene CPuORF8  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF8 represents a conserved upstream opening reading frame relative to major ORF AT1G06150.1  product CPuORF8 (Conserved peptide upstream open reading frame 8)  note Conserved peptide upstream open reading frame 8 (CPuORF8); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) protein-related (TAIR:AT2G31280.4); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G06149.1p  transcript_id AT1G06149.1  protein_id AT1G06149.1p  transcript_id AT1G06149.1  
At1g06148	chr1:001877043	0.0	C/1877043-1877150,1876836-1876955	AT1G06148.1  CDS  function Unknown gene  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast.  protein_id AT1G06148.1p  transcript_id AT1G06148.1  protein_id AT1G06148.1p  transcript_id AT1G06148.1  
At1g06148	chr1:001877043	0.0	C/1877043-1877150,1876840-1876955,1875301-1875328	AT1G06148.2  CDS  function Unknown gene  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast.  protein_id AT1G06148.2p  transcript_id AT1G06148.2  protein_id AT1G06148.2p  transcript_id AT1G06148.2  
At1g06160	chr1:001883046	0.0	W/1883046-1883780	AT1G06160.1  CDS  gene_syn F9P14.2, F9P14_2, OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59, ORA59  gene ORA59  function encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.  go_process regulation of transcription, DNA-dependent|GO:0006355|10715325|TAS  go_process response to ethylene stimulus|GO:0009723|18467450|IEP  go_process response to jasmonic acid stimulus|GO:0009753|18467450|IEP  go_process jasmonic acid and ethylene-dependent systemic resistance|GO:0009861|18467450|IMP  go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS  go_process defense response to fungus|GO:0050832|18467450|IMP  go_function DNA binding|GO:0003677|10715325|TAS  go_function transcription factor activity|GO:0003700|10715325|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9687012|TAS  go_function transcription activator activity|GO:0016563|10715325|TAS  product ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59); DNA binding / transcription activator/ transcription factor  note OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59 (ORA59); FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: in 6 processes; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ATERF15 (Ethylene-responsive element binding factor 15); DNA binding / transcription activator/ transcription factor (TAIR:AT2G31230.1); Has 4337 Blast hits to 4111 proteins in 265 species: Archae - 0; Bacteria - 28; Metazoa - 323; Fungi - 35; Plants - 3763; Viruses - 4; Other Eukaryotes - 184 (source: NCBI BLink).  protein_id AT1G06160.1p  transcript_id AT1G06160.1  protein_id AT1G06160.1p  transcript_id AT1G06160.1  
At1g06170	chr1:001885833	0.0	C/1885833-1886564,1885341-1885748,1885146-1885268	AT1G06170.1  CDS  gene_syn F9P14.3, F9P14_3  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT2G31220.1); Has 696 Blast hits to 696 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 690; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G06170.1p  transcript_id AT1G06170.1  protein_id AT1G06170.1p  transcript_id AT1G06170.1  
At1g06170	chr1:001885833	0.0	C/1885833-1886564,1885341-1885748,1885146-1885268	AT1G06170.2  CDS  gene_syn F9P14.3, F9P14_3  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT2G31220.1); Has 696 Blast hits to 696 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 690; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G06170.2p  transcript_id AT1G06170.2  protein_id AT1G06170.2p  transcript_id AT1G06170.2  
At1g06180	chr1:001889510	0.0	W/1889510-1889642,1889797-1889926,1890612-1891089	AT1G06180.1  CDS  gene_syn ATMYB13, ATMYBLFGN, F9P14.4, F9P14_4, MYB DOMAIN PROTEIN 13  gene ATMYB13  function member of MYB3R- and R2R3- type MYB- encoding genes  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ATMYB13 (MYB DOMAIN PROTEIN 13); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 13 (ATMYB13); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 8 processes; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB14 (MYB DOMAIN PROTEIN 14); DNA binding / transcription factor (TAIR:AT2G31180.1); Has 6306 Blast hits to 5800 proteins in 361 species: Archae - 0; Bacteria - 0; Metazoa - 681; Fungi - 291; Plants - 3793; Viruses - 6; Other Eukaryotes - 1535 (source: NCBI BLink).  protein_id AT1G06180.1p  transcript_id AT1G06180.1  protein_id AT1G06180.1p  transcript_id AT1G06180.1  
At1g06190	chr1:001894033	0.0	C/1894033-1894078,1892467-1893626	AT1G06190.1  CDS  gene_syn F9P14.5, F9P14_5  go_component chloroplast|GO:0009507|18431481|IDA  go_process ATP biosynthetic process|GO:0006754||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662||IEA  product ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism  note ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism, ATP binding; INVOLVED IN: ATP biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757); BEST Arabidopsis thaliana protein match is: ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism (TAIR:AT2G31150.1); Has 1742 Blast hits to 1480 proteins in 252 species: Archae - 4; Bacteria - 198; Metazoa - 552; Fungi - 215; Plants - 95; Viruses - 50; Other Eukaryotes - 628 (source: NCBI BLink).  protein_id AT1G06190.1p  transcript_id AT1G06190.1  protein_id AT1G06190.1p  transcript_id AT1G06190.1  
At1g06190	chr1:001894033	0.0	C/1894033-1894078,1892846-1893626,1892589-1892640	AT1G06190.2  CDS  gene_syn F9P14.5, F9P14_5  go_component chloroplast|GO:0009507|18431481|IDA  go_process ATP biosynthetic process|GO:0006754||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662||IEA  product ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism  note ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism, ATP binding; INVOLVED IN: ATP biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757); BEST Arabidopsis thaliana protein match is: ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism (TAIR:AT2G31150.1); Has 44 Blast hits to 44 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 0; Plants - 22; Viruses - 3; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G06190.2p  transcript_id AT1G06190.2  protein_id AT1G06190.2p  transcript_id AT1G06190.2  
At1g06200	chr1:001896781	0.0	C/1896781-1896852,1895762-1895934,1894991-1895174,1894787-1894893,1894604-1894688	AT1G06200.1  CDS  gene_syn F9P14.6, F9P14_6  go_component membrane|GO:0016020||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type peptidase activity|GO:0008236||IEA  product serine-type peptidase  note serine-type peptidase; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S24, S26A and S26B, C-terminal (InterPro:IPR011056), Peptidase S24, S26A, S26B and S26C (InterPro:IPR015927), Peptidase S26A, signal peptidase I (InterPro:IPR000223), Peptidase S26A (InterPro:IPR014037); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31140.1); Has 156 Blast hits to 156 proteins in 51 species: Archae - 0; Bacteria - 4; Metazoa - 57; Fungi - 17; Plants - 68; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G06200.1p  transcript_id AT1G06200.1  protein_id AT1G06200.1p  transcript_id AT1G06200.1  
At1g06210	chr1:001897567	0.0	W/1897567-1898052,1898141-1898422,1898603-1898986	AT1G06210.1  CDS  gene_syn F9P14.7, F9P14_7  go_component intracellular|GO:0005622||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_component Golgi stack|GO:0005795||ISS  go_process intracellular protein transport|GO:0006886||ISS  go_process intra-Golgi vesicle-mediated transport|GO:0006891||ISS  go_function protein transporter activity|GO:0008565||ISS  product VHS domain-containing protein / GAT domain-containing protein  note VHS domain-containing protein / GAT domain-containing protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), GAT (InterPro:IPR004152), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: VHS domain-containing protein / GAT domain-containing protein (TAIR:AT5G16880.2); Has 1056 Blast hits to 1054 proteins in 134 species: Archae - 0; Bacteria - 6; Metazoa - 652; Fungi - 172; Plants - 139; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).  protein_id AT1G06210.1p  transcript_id AT1G06210.1  protein_id AT1G06210.1p  transcript_id AT1G06210.1  
At1g06210	chr1:001897567	0.0	W/1897567-1898052,1898141-1898494	AT1G06210.2  CDS  gene_syn F9P14.7, F9P14_7  go_process intracellular protein transport|GO:0006886||IEA  go_component Golgi stack|GO:0005795||ISS  go_process intracellular protein transport|GO:0006886||ISS  go_process intra-Golgi vesicle-mediated transport|GO:0006891||ISS  go_function protein transporter activity|GO:0008565||ISS  product VHS domain-containing protein / GAT domain-containing protein  note VHS domain-containing protein / GAT domain-containing protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: VHS domain-containing protein / GAT domain-containing protein (TAIR:AT5G16880.3); Has 773 Blast hits to 773 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 495; Fungi - 117; Plants - 132; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G06210.2p  transcript_id AT1G06210.2  protein_id AT1G06210.2p  transcript_id AT1G06210.2  
At1g06220	chr1:001900524	0.0	W/1900524-1901264,1901351-1901419,1901524-1902717,1902829-1902927,1903041-1903199,1903316-1903401,1903486-1903684,1903763-1903873,1903965-1904171,1904485-1904583	AT1G06220.1  CDS  gene_syn CLO, CLOTHO, F9P14.8, F9P14_8, GAMETOPHYTE FACTOR 1, GFA1, MATERNAL EFFECT EMBRYO ARREST 5, MEE5  gene MEE5  function Encodes a protein with similarity to splicing factor Snu114. Snu114 is thought to be involved in activation of the splicosome. Loss of GFA1 function results in reduced female fertility. Approximately 50% of ovules abort due to defects in the female gametophyte. In mutant gametophytes antipodal cells express egg cell markers suggesting a defect in specification of cell fate.GFA1 is also required to restrict the expression of LIS.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_component nuclear speck|GO:0016607|18702672|IDA  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process regulation of embryo sac egg cell differentiation|GO:0045694|18702672|IMP  go_function translation elongation factor activity|GO:0003746||ISS  go_function translation factor activity, nucleic acid binding|GO:0008135||ISS  product MEE5 (MATERNAL EFFECT EMBRYO ARREST 5); GTP binding / GTPase/ translation elongation factor/ translation factor, nucleic acid binding  note MATERNAL EFFECT EMBRYO ARREST 5 (MEE5); FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, translation elongation factor activity, GTPase activity; INVOLVED IN: embryonic development ending in seed dormancy, regulation of embryo sac egg cell differentiation; LOCATED IN: nuclear speck, cell wall, plasma membrane; EXPRESSED IN: whole plant, cultured cell; CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EFG/EF2, domain IV (InterPro:IPR005517), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721), Elongation factor G, III and V (InterPro:IPR009022), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: elongation factor Tu family protein (TAIR:AT5G25230.1); Has 41723 Blast hits to 39499 proteins in 3155 species: Archae - 907; Bacteria - 21795; Metazoa - 1934; Fungi - 1110; Plants - 875; Viruses - 0; Other Eukaryotes - 15102 (source: NCBI BLink).  protein_id AT1G06220.1p  transcript_id AT1G06220.1  protein_id AT1G06220.1p  transcript_id AT1G06220.1  
At1g06220	chr1:001900524	0.0	W/1900524-1901264,1901351-1901419,1901524-1902717,1902829-1902927,1903041-1903199,1903316-1903401,1903486-1903684,1903763-1903873,1903965-1904171,1904485-1904583	AT1G06220.2  CDS  gene_syn CLO, CLOTHO, F9P14.8, F9P14_8, GAMETOPHYTE FACTOR 1, GFA1, MATERNAL EFFECT EMBRYO ARREST 5, MEE5  gene MEE5  function Encodes a protein with similarity to splicing factor Snu114. Snu114 is thought to be involved in activation of the splicosome. Loss of GFA1 function results in reduced female fertility. Approximately 50% of ovules abort due to defects in the female gametophyte. In mutant gametophytes antipodal cells express egg cell markers suggesting a defect in specification of cell fate.GFA1 is also required to restrict the expression of LIS.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_component nuclear speck|GO:0016607|18702672|IDA  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process regulation of embryo sac egg cell differentiation|GO:0045694|18702672|IMP  go_function translation elongation factor activity|GO:0003746||ISS  go_function translation factor activity, nucleic acid binding|GO:0008135||ISS  product MEE5 (MATERNAL EFFECT EMBRYO ARREST 5); GTP binding / GTPase/ translation elongation factor/ translation factor, nucleic acid binding  note MATERNAL EFFECT EMBRYO ARREST 5 (MEE5); FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, translation elongation factor activity, GTPase activity; INVOLVED IN: embryonic development ending in seed dormancy, regulation of embryo sac egg cell differentiation; LOCATED IN: nuclear speck, cell wall, plasma membrane; EXPRESSED IN: whole plant, cultured cell; CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EFG/EF2, domain IV (InterPro:IPR005517), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721), Elongation factor G, III and V (InterPro:IPR009022), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: elongation factor Tu family protein (TAIR:AT5G25230.1); Has 41723 Blast hits to 39499 proteins in 3155 species: Archae - 907; Bacteria - 21795; Metazoa - 1934; Fungi - 1110; Plants - 875; Viruses - 0; Other Eukaryotes - 15102 (source: NCBI BLink).  protein_id AT1G06220.2p  transcript_id AT1G06220.2  protein_id AT1G06220.2p  transcript_id AT1G06220.2  
At1g06225	chr1:001905975	0.0	W/1905975-1906226	AT1G06225.1  CDS  gene_syn CLAVATA3/ESR-RELATED 3, CLE3  gene CLE3  function Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.  go_component apoplast|GO:0048046|11457943|RCA  go_process signal transduction|GO:0007165||ISS  go_function receptor binding|GO:0005102||ISS  go_function protein binding|GO:0005515|11457943|ISS  product CLE3 (CLAVATA3/ESR-RELATED 3); protein binding / receptor binding  note CLAVATA3/ESR-RELATED 3 (CLE3); FUNCTIONS IN: protein binding, receptor binding; INVOLVED IN: signal transduction; LOCATED IN: apoplast; BEST Arabidopsis thaliana protein match is: CLE4 (CLAVATA3/ESR-RELATED 4); protein binding / receptor binding (TAIR:AT2G31081.1); Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G06225.1p  transcript_id AT1G06225.1  protein_id AT1G06225.1p  transcript_id AT1G06225.1  
At1g06230	chr1:001907626	0.0	W/1907626-1909722,1909807-1909855,1909935-1910042,1910137-1910183	AT1G06230.1  CDS  gene_syn F9P14.9, F9P14_9, GLOBAL TRANSCRIPTION FACTOR GROUP E 4, GTE4  gene GTE4  function This gene is predicted to encode a bromodomain-containing protein. Plant lines expressing RNAi constructs targeted against GTE4 show some resistance to agrobacterium-mediated root transformation.  go_component cellular_component|GO:0005575||ND  go_process DNA mediated transformation|GO:0009294|17827277|IMP  go_function DNA binding|GO:0003677||ISS  product GTE4 (GLOBAL TRANSCRIPTION FACTOR GROUP E 4); DNA binding  note GLOBAL TRANSCRIPTION FACTOR GROUP E 4 (GTE4); FUNCTIONS IN: DNA binding; INVOLVED IN: DNA mediated transformation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT1G17790.1); Has 8643 Blast hits to 4984 proteins in 266 species: Archae - 4; Bacteria - 189; Metazoa - 4675; Fungi - 976; Plants - 342; Viruses - 47; Other Eukaryotes - 2410 (source: NCBI BLink).  protein_id AT1G06230.1p  transcript_id AT1G06230.1  protein_id AT1G06230.1p  transcript_id AT1G06230.1  
At1g06230	chr1:001907626	0.0	W/1907626-1909722,1909807-1909855,1909935-1910042,1910137-1910183	AT1G06230.2  CDS  gene_syn F9P14.9, F9P14_9, GLOBAL TRANSCRIPTION FACTOR GROUP E 4, GTE4  gene GTE4  function This gene is predicted to encode a bromodomain-containing protein. Plant lines expressing RNAi constructs targeted against GTE4 show some resistance to agrobacterium-mediated root transformation.  go_component cellular_component|GO:0005575||ND  go_process DNA mediated transformation|GO:0009294|17827277|IMP  go_function DNA binding|GO:0003677||ISS  product GTE4 (GLOBAL TRANSCRIPTION FACTOR GROUP E 4); DNA binding  note GLOBAL TRANSCRIPTION FACTOR GROUP E 4 (GTE4); FUNCTIONS IN: DNA binding; INVOLVED IN: DNA mediated transformation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT1G17790.1); Has 8643 Blast hits to 4984 proteins in 266 species: Archae - 4; Bacteria - 189; Metazoa - 4675; Fungi - 976; Plants - 342; Viruses - 47; Other Eukaryotes - 2410 (source: NCBI BLink).  protein_id AT1G06230.2p  transcript_id AT1G06230.2  protein_id AT1G06230.2p  transcript_id AT1G06230.2  
At1g06240	chr1:001911166	0.0	W/1911166-1911567,1911642-1911883,1911969-1912065,1912156-1912339,1912441-1912522,1912629-1912701,1912804-1912875	AT1G06240.1  CDS  gene_syn F9P14.10, F9P14_10  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF455 (InterPro:IPR007402); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04520.1); Has 603 Blast hits to 603 proteins in 260 species: Archae - 0; Bacteria - 412; Metazoa - 12; Fungi - 30; Plants - 34; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).  protein_id AT1G06240.1p  transcript_id AT1G06240.1  protein_id AT1G06240.1p  transcript_id AT1G06240.1  
At1g06250	chr1:001914615	0.0	C/1914615-1914850,1914190-1914547,1913339-1914016	AT1G06250.1  CDS  gene_syn F9P14.11, F9P14_11  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_component cellular_component|GO:0005575||ND  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product lipase class 3 family protein  note lipase class 3 family protein; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: triacylglycerol lipase (TAIR:AT2G31100.1); Has 671 Blast hits to 664 proteins in 121 species: Archae - 0; Bacteria - 95; Metazoa - 25; Fungi - 98; Plants - 311; Viruses - 4; Other Eukaryotes - 138 (source: NCBI BLink).  protein_id AT1G06250.1p  transcript_id AT1G06250.1  protein_id AT1G06250.1p  transcript_id AT1G06250.1  
At1g06265	chr1:001914943	0.0	C/1914943-1917661	AT1G06265.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G06260  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G06265.1  
At1g06265	chr1:001915008	0.0	C/1915008-1916278	AT1G06265.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G06260  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G06265.2  
At1g06260	chr1:001916449	0.0	W/1916449-1916893,1916999-1917585	AT1G06260.1  CDS  gene_syn F9P14.12, F9P14_12  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product cysteine proteinase, putative  note cysteine proteinase, putative; FUNCTIONS IN: cysteine-type peptidase activity, cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: cysteine proteinase, putative / thiol protease, putative (TAIR:AT3G19390.1); Has 6142 Blast hits to 6095 proteins in 593 species: Archae - 35; Bacteria - 119; Metazoa - 2800; Fungi - 4; Plants - 1218; Viruses - 120; Other Eukaryotes - 1846 (source: NCBI BLink).  protein_id AT1G06260.1p  transcript_id AT1G06260.1  protein_id AT1G06260.1p  transcript_id AT1G06260.1  
At1g06270	chr1:001918242	0.0	C/1918242-1919273	AT1G06270.1  CDS  gene_syn F9P14.13, F9P14_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G09900.1); Has 5658 Blast hits to 2053 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 46; Plants - 5533; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT1G06270.1p  transcript_id AT1G06270.1  protein_id AT1G06270.1p  transcript_id AT1G06270.1  
At1g06280	chr1:001920327	0.0	C/1920327-1920947	AT1G06280.1  CDS  gene_syn F9P14.14, F9P14_14, LBD2, LOB DOMAIN-CONTAINING PROTEIN 2  gene LBD2  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product LBD2 (LOB DOMAIN-CONTAINING PROTEIN 2)  note LOB DOMAIN-CONTAINING PROTEIN 2 (LBD2); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD7 (LOB DOMAIN-CONTAINING PROTEIN 7) (TAIR:AT1G72980.1); Has 527 Blast hits to 524 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 516; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G06280.1p  transcript_id AT1G06280.1  protein_id AT1G06280.1p  transcript_id AT1G06280.1  
At1g06290	chr1:001922423	0.0	W/1922423-1922892,1923141-1923258,1923353-1923460,1923570-1923742,1923822-1923921,1924009-1924083,1924193-1924323,1924465-1924600,1924686-1924805,1924897-1925043,1925138-1925242,1925341-1925442,1925760-1926002	AT1G06290.1  CDS  gene_syn ACX3, ACYL-COA OXIDASE 3, ATACX3  gene ACX3  function Encodes an acyl-CoA oxidase with specificity for medium chain fatty acids.  go_component peroxisome|GO:0005777||IEA  go_component peroxisome|GO:0005777||ISS  go_process fatty acid beta-oxidation|GO:0006635|15743450|TAS  go_process fatty acid beta-oxidation|GO:0006635||ISS  go_process medium-chain fatty acid metabolic process|GO:0051791|15743450|TAS  go_function acyl-CoA oxidase activity|GO:0003997|15743450|TAS  go_function acyl-CoA oxidase activity|GO:0003997||ISS  product ACX3 (ACYL-COA OXIDASE 3); acyl-CoA oxidase  note ACYL-COA OXIDASE 3 (ACX3); FUNCTIONS IN: acyl-CoA oxidase activity; INVOLVED IN: medium-chain fatty acid metabolic process, fatty acid beta-oxidation; LOCATED IN: peroxisome; EXPRESSED IN: male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal (InterPro:IPR013764), Acyl-CoA oxidase/dehydrogenase, type 1 (InterPro:IPR006090), Acyl-CoA dehydrogenase/oxidase, middle and N-terminal (InterPro:IPR009100), Acyl-CoA oxidase (InterPro:IPR012258), Acyl-CoA dehydrogenase/oxidase, central region (InterPro:IPR006091), Acyl-CoA oxidase, C-terminal (InterPro:IPR002655), Acyl-CoA dehydrogenase/oxidase C-terminal (InterPro:IPR009075); BEST Arabidopsis thaliana protein match is: ACX6 (ACYL-COA OXIDASE 6); FAD binding / acyl-CoA dehydrogenase/ acyl-CoA oxidase/ electron carrier/ oxidoreductase/ oxidoreductase, acting on the CH-CH group of donors (TAIR:AT1G06310.1); Has 7915 Blast hits to 7911 proteins in 806 species: Archae - 97; Bacteria - 4438; Metazoa - 1362; Fungi - 388; Plants - 177; Viruses - 0; Other Eukaryotes - 1453 (source: NCBI BLink).  protein_id AT1G06290.1p  transcript_id AT1G06290.1  protein_id AT1G06290.1p  transcript_id AT1G06290.1  
At1g06310	chr1:001926802	0.0	W/1926802-1927271,1927360-1927477,1927555-1927662,1927737-1927909,1927995-1928094,1928178-1928252,1928363-1928493,1928735-1928870,1928959-1929078,1929162-1929308,1929392-1929496,1929581-1929682,1929985-1930227	AT1G06310.1  CDS  gene_syn ACX6, ACYL-COA OXIDASE 6, T2D23.2, T2D23_2  gene ACX6  function Encodes a putative acyl-CoA oxidase. However, no transcripts have been detected for this gene and no altered phenotypes have been detected in plants mutant for this gene. This suggests that ACX6 does not significantly contribute to seedling beta-oxidation of fatty acids or indole-3-butyric acid in vivo.  go_component peroxisome|GO:0005777||IEA  go_process fatty acid metabolic process|GO:0006631||IEA  go_process fatty acid beta-oxidation|GO:0006635||IEA  go_process metabolic process|GO:0008152||IEA  go_function acyl-CoA dehydrogenase activity|GO:0003995||IEA  go_function acyl-CoA oxidase activity|GO:0003997||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on the CH-CH group of donors|GO:0016627||IEA  go_function FAD binding|GO:0050660||IEA  go_component peroxisome|GO:0005777||ISS  go_process fatty acid beta-oxidation|GO:0006635||ISS  go_function acyl-CoA oxidase activity|GO:0003997||ISS  product ACX6 (ACYL-COA OXIDASE 6); FAD binding / acyl-CoA dehydrogenase/ acyl-CoA oxidase/ electron carrier/ oxidoreductase/ oxidoreductase, acting on the CH-CH group of donors  note ACYL-COA OXIDASE 6 (ACX6); FUNCTIONS IN: in 6 functions; INVOLVED IN: fatty acid beta-oxidation, fatty acid metabolic process, metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal (InterPro:IPR013764), Acyl-CoA oxidase/dehydrogenase, type 1 (InterPro:IPR006090), Acyl-CoA dehydrogenase/oxidase, middle and N-terminal (InterPro:IPR009100), Acyl-CoA oxidase (InterPro:IPR012258), Acyl-CoA dehydrogenase/oxidase, N-terminal (InterPro:IPR013786), Acyl-CoA dehydrogenase/oxidase, central region (InterPro:IPR006091), Acyl-CoA oxidase, C-terminal (InterPro:IPR002655), Acyl-CoA dehydrogenase/oxidase C-terminal (InterPro:IPR009075); BEST Arabidopsis thaliana protein match is: ACX3 (ACYL-COA OXIDASE 3); acyl-CoA oxidase (TAIR:AT1G06290.1); Has 6970 Blast hits to 6967 proteins in 774 species: Archae - 100; Bacteria - 3926; Metazoa - 1281; Fungi - 369; Plants - 158; Viruses - 0; Other Eukaryotes - 1136 (source: NCBI BLink).  protein_id AT1G06310.1p  transcript_id AT1G06310.1  protein_id AT1G06310.1p  transcript_id AT1G06310.1  
At1g06320	chr1:001930602	0.0	W/1930602-1930700,1930791-1930835,1931006-1931449	AT1G06320.1  CDS  gene_syn T2D23.15, T2D23_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 15 Blast hits to 15 proteins in 5 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G06320.1p  transcript_id AT1G06320.1  protein_id AT1G06320.1p  transcript_id AT1G06320.1  
At1g06330	chr1:001932158	0.0	C/1932158-1932266,1931671-1932041	AT1G06330.1  CDS  gene_syn T2D23.3, T2D23_3  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_process copper ion transport|GO:0006825||ISS  go_function copper ion binding|GO:0005507||ISS  product copper-binding family protein  note copper-binding family protein; FUNCTIONS IN: copper ion binding, metal ion binding; INVOLVED IN: copper ion transport, metal ion transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: copper-binding family protein (TAIR:AT1G29100.1); Has 790 Blast hits to 758 proteins in 80 species: Archae - 0; Bacteria - 61; Metazoa - 26; Fungi - 8; Plants - 695; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G06330.1p  transcript_id AT1G06330.1  protein_id AT1G06330.1p  transcript_id AT1G06330.1  
At1g06340	chr1:001933583	0.0	C/1933583-1933987	AT1G06340.1  CDS  gene_syn T2D23.4, T2D23_4  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product agenet domain-containing protein  note agenet domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein (TAIR:AT1G09320.1); Has 146 Blast hits to 120 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G06340.1p  transcript_id AT1G06340.1  protein_id AT1G06340.1p  transcript_id AT1G06340.1  
At1g06350	chr1:001936475	0.0	C/1936475-1936789,1936228-1936368,1936004-1936144,1935799-1935905,1935510-1935708	AT1G06350.1  CDS  gene_syn T2D23.5, T2D23_5  go_process lipid metabolic process|GO:0006629||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product fatty acid desaturase family protein  note fatty acid desaturase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: lipid metabolic process; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1, core (InterPro:IPR015876), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: fatty acid desaturase family protein (TAIR:AT1G06360.1); Has 2719 Blast hits to 2719 proteins in 596 species: Archae - 0; Bacteria - 1082; Metazoa - 696; Fungi - 152; Plants - 71; Viruses - 3; Other Eukaryotes - 715 (source: NCBI BLink).  protein_id AT1G06350.1p  transcript_id AT1G06350.1  protein_id AT1G06350.1p  transcript_id AT1G06350.1  
At1g06360	chr1:001940106	0.0	C/1940106-1940417,1939874-1940014,1939658-1939798,1939464-1939570,1939173-1939371	AT1G06360.1  CDS  gene_syn T2D23.6, T2D23_6  go_process lipid metabolic process|GO:0006629||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product fatty acid desaturase family protein  note fatty acid desaturase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: lipid metabolic process; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1, core (InterPro:IPR015876), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: fatty acid desaturase family protein (TAIR:AT1G06350.1); Has 2722 Blast hits to 2722 proteins in 596 species: Archae - 0; Bacteria - 1082; Metazoa - 698; Fungi - 152; Plants - 71; Viruses - 3; Other Eukaryotes - 716 (source: NCBI BLink).  protein_id AT1G06360.1p  transcript_id AT1G06360.1  protein_id AT1G06360.1p  transcript_id AT1G06360.1  
At1g06370	chr1:001942843	0.0	C/1942843-1944934	AT1G06370.1  pseudogenic_transcript  pseudo  gene_syn T2D23.14  note pseudogene, similar to putative glycolipid alpha-mannosyltransferase, blastp match of 41% identity and 9.6e-10 P-value to GP|13161358|dbj|BAB32949.1||AP002908 putative glycolipid alpha-mannosyltransferase {Oryza sativa (japonica cultivar-group)}  
At1g06380	chr1:001945124	0.0	W/1945124-1945888	AT1G06380.1  CDS  gene_syn T2D23.8, T2D23_8  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  product ribosomal protein-related  note ribosomal protein-related; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein-related (TAIR:AT2G42650.1); Has 757 Blast hits to 757 proteins in 209 species: Archae - 3; Bacteria - 0; Metazoa - 338; Fungi - 175; Plants - 144; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).  protein_id AT1G06380.1p  transcript_id AT1G06380.1  protein_id AT1G06380.1p  transcript_id AT1G06380.1  
At1g06390	chr1:001946860	0.0	W/1946860-1946964,1948123-1948215,1948429-1948488,1948574-1948846,1948936-1949010,1949085-1949141,1949315-1949455,1949567-1949617,1949725-1949820,1949938-1950021,1950149-1950250,1950331-1950417	AT1G06390.1  CDS  gene_syn ATGSK1, ATSK22, GSK1, GSK3/SHAGGY-LIKE PROTEIN KINASE, GSK3/SHAGGY-LIKE PROTEIN KINASE 1, SHAGGY-LIKE PROTEIN KINASE 22, SK22, T2D23.9, T2D23_9  gene GSK1  function encodes a GSK3/shaggy-like protein kinase. Gene expression is induced by NaCl and ABA but not KCl, suggesting that this gene may be involved in response to osmotic stress. This protein can interact with the BZR1 protein involved in brassinosteroid-mediated signaling in a Y2H assay and promotes BZR1 phosphorylation in protoplasts.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process protein amino acid phosphorylation|GO:0006468|17873094|IDA  go_process brassinosteroid mediated signaling|GO:0009742|17873094|IPI  go_process regulation of protein localization|GO:0032880|17873094|IDA  go_process hyperosmotic salinity response|GO:0042538|11532176|IMP  go_function glycogen synthase kinase 3 activity|GO:0004696|10198112|ISS  go_function kinase activity|GO:0016301||ISS  product GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1); glycogen synthase kinase 3/ kinase  note GSK3/SHAGGY-LIKE PROTEIN KINASE 1 (GSK1); FUNCTIONS IN: kinase activity, glycogen synthase kinase 3 activity; INVOLVED IN: brassinosteroid mediated signaling, hyperosmotic salinity response, protein amino acid phosphorylation, regulation of protein localization; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ASKdZeta (Arabidopsis SHAGGY-related protein kinase dZeta); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT2G30980.1); Has 78701 Blast hits to 77721 proteins in 2460 species: Archae - 32; Bacteria - 6039; Metazoa - 32902; Fungi - 7866; Plants - 16105; Viruses - 349; Other Eukaryotes - 15408 (source: NCBI BLink).  protein_id AT1G06390.1p  transcript_id AT1G06390.1  protein_id AT1G06390.1p  transcript_id AT1G06390.1  
At1g06390	chr1:001946860	0.0	W/1946860-1946964,1948123-1948215,1948429-1948488,1948574-1948846,1948936-1949010,1949085-1949141,1949315-1949455,1949567-1949617,1949725-1949820,1949938-1950021,1950149-1950250,1950331-1950417	AT1G06390.2  CDS  gene_syn ATGSK1, ATSK22, GSK1, GSK3/SHAGGY-LIKE PROTEIN KINASE, GSK3/SHAGGY-LIKE PROTEIN KINASE 1, SHAGGY-LIKE PROTEIN KINASE 22, SK22, T2D23.9, T2D23_9  gene GSK1  function encodes a GSK3/shaggy-like protein kinase. Gene expression is induced by NaCl and ABA but not KCl, suggesting that this gene may be involved in response to osmotic stress. This protein can interact with the BZR1 protein involved in brassinosteroid-mediated signaling in a Y2H assay and promotes BZR1 phosphorylation in protoplasts.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process protein amino acid phosphorylation|GO:0006468|17873094|IDA  go_process brassinosteroid mediated signaling|GO:0009742|17873094|IPI  go_process regulation of protein localization|GO:0032880|17873094|IDA  go_process hyperosmotic salinity response|GO:0042538|11532176|IMP  go_function glycogen synthase kinase 3 activity|GO:0004696|10198112|ISS  go_function kinase activity|GO:0016301||ISS  product GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1); glycogen synthase kinase 3/ kinase  note GSK3/SHAGGY-LIKE PROTEIN KINASE 1 (GSK1); FUNCTIONS IN: kinase activity, glycogen synthase kinase 3 activity; INVOLVED IN: brassinosteroid mediated signaling, hyperosmotic salinity response, protein amino acid phosphorylation, regulation of protein localization; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ASKdZeta (Arabidopsis SHAGGY-related protein kinase dZeta); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT2G30980.1); Has 78701 Blast hits to 77721 proteins in 2460 species: Archae - 32; Bacteria - 6039; Metazoa - 32902; Fungi - 7866; Plants - 16105; Viruses - 349; Other Eukaryotes - 15408 (source: NCBI BLink).  protein_id AT1G06390.2p  transcript_id AT1G06390.2  protein_id AT1G06390.2p  transcript_id AT1G06390.2  
At1g06400	chr1:001952466	0.0	C/1952466-1952686,1951089-1951518	AT1G06400.1  CDS  gene_syn ARA-2, ARA2, ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A1A, ATRAB11E, ATRABA1A, SMALL GTP-BINDING PROTEIN, T2D23.10, T2D23_10  gene ARA-2  function small GTP-binding protein (ara-2)  go_component plasma membrane|GO:0005886|17317660|IDA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525|1748311|ISS  go_function GTP binding|GO:0005525||ISS  product ARA-2; GTP binding  note ARA-2; FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: AtRABA1c (Arabidopsis Rab GTPase homolog A1c); GTP binding (TAIR:AT5G45750.1); Has 21338 Blast hits to 21300 proteins in 606 species: Archae - 21; Bacteria - 104; Metazoa - 11930; Fungi - 2463; Plants - 1870; Viruses - 19; Other Eukaryotes - 4931 (source: NCBI BLink).  protein_id AT1G06400.1p  transcript_id AT1G06400.1  protein_id AT1G06400.1p  transcript_id AT1G06400.1  
At1g06410	chr1:001955413	0.0	W/1955413-1957382,1957477-1957750,1957842-1958153	AT1G06410.1  CDS  gene_syn ARABIDOPSIS THALIANA TREHALOSE-PHOSPHATASE/SYNTHASE 7, ATTPS7, ATTPSA, T2D23.11, T2D23_11, TPS7, TREHALOSE -6-PHOSPHATASE SYNTHASE S7  gene ATTPS7  function Encodes an enzyme putatively involved in trehalose biosynthesis. Though the protein has both trehalose-6-phosphate synthase (TPS)-like and trehalose-6-phosphate phosphatase (TPP)-like domains, neither activity has been detected in enzymatic assays nor has the protein been able to complement yeast TPS or TPP mutants.  go_process trehalose biosynthetic process|GO:0005992||IEA  go_process metabolic process|GO:0008152||IEA  go_process trehalose biosynthetic process|GO:0005992||ISS  go_function alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity|GO:0003825|11520870|IGI  go_function trehalose-phosphatase activity|GO:0004805|11520870|IGI  go_function trehalose-phosphatase activity|GO:0004805||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product ATTPS7; alpha,alpha-trehalose-phosphate synthase (UDP-forming)/ transferase, transferring glycosyl groups / trehalose-phosphatase  note ATTPS7; FUNCTIONS IN: transferase activity, transferring glycosyl groups, alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process, metabolic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Glycosyl transferase, family 20 (InterPro:IPR001830), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: ATTPS5; protein binding / transferase, transferring glycosyl groups / trehalose-phosphatase (TAIR:AT4G17770.1); Has 2769 Blast hits to 2719 proteins in 619 species: Archae - 36; Bacteria - 1380; Metazoa - 130; Fungi - 472; Plants - 344; Viruses - 0; Other Eukaryotes - 407 (source: NCBI BLink).  protein_id AT1G06410.1p  transcript_id AT1G06410.1  protein_id AT1G06410.1p  transcript_id AT1G06410.1  
At1g06420	chr1:001958987	0.0	W/1958987-1959652	AT1G06420.1  CDS  gene_syn T2D23.12, T2D23_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; Has 1024 Blast hits to 647 proteins in 104 species: Archae - 0; Bacteria - 29; Metazoa - 257; Fungi - 71; Plants - 30; Viruses - 0; Other Eukaryotes - 637 (source: NCBI BLink).  protein_id AT1G06420.1p  transcript_id AT1G06420.1  protein_id AT1G06420.1p  transcript_id AT1G06420.1  
At1g06430	chr1:001961374	0.0	C/1961374-1962525,1960970-1961283,1960655-1960895,1960214-1960564	AT1G06430.1  CDS  gene_syn FTSH PROTEASE 8, FTSH8  gene FTSH8  function encodes a FtsH protease that is localized to the chloroplast  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component chloroplast|GO:0009507|14630971|IDA  go_process PSII associated light-harvesting complex II catabolic process|GO:0010304|16157880|TAS  go_function ATP-dependent peptidase activity|GO:0004176|11299370|ISS  go_function metallopeptidase activity|GO:0008237||ISS  go_function zinc ion binding|GO:0008270||ISS  go_function ATPase activity|GO:0016887||ISS  product FTSH8; ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion binding  note FTSH8; FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding; INVOLVED IN: PSII associated light-harvesting complex II catabolic process; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: VAR2 (VARIEGATED 2); ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion binding (TAIR:AT2G30950.1); Has 28831 Blast hits to 27221 proteins in 1868 species: Archae - 926; Bacteria - 9494; Metazoa - 4159; Fungi - 2505; Plants - 1781; Viruses - 23; Other Eukaryotes - 9943 (source: NCBI BLink).  protein_id AT1G06430.1p  transcript_id AT1G06430.1  protein_id AT1G06430.1p  transcript_id AT1G06430.1  
At1g06440	chr1:001963733	0.0	C/1963733-1964905	AT1G06440.1  CDS  gene_syn F12K11.21, F12K11_21  go_component intracellular|GO:0005622||IEA  go_component mitochondrion|GO:0005739||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  product ubiquitin thiolesterase  note ubiquitin thiolesterase; FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: mitochondrion, intracellular; EXPRESSED IN: shoot apex, root; CONTAINS InterPro DOMAIN/s: Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (InterPro:IPR001578); BEST Arabidopsis thaliana protein match is: RPD1 (ROOT PRIMORDIUM DEFECTIVE 1); ubiquitin thiolesterase (TAIR:AT4G33495.1); Has 215 Blast hits to 215 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 214; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G06440.1p  transcript_id AT1G06440.1  protein_id AT1G06440.1p  transcript_id AT1G06440.1  
At1g06450	chr1:001965924	0.0	W/1965924-1967006	AT1G06450.1  CDS  gene_syn F12K11.20, F12K11_20  go_component nucleus|GO:0005634||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process RNA modification|GO:0009451||ISS  go_function ribonuclease activity|GO:0004540||ISS  product CCR4-NOT transcription complex protein, putative  note CCR4-NOT transcription complex protein, putative; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: CCR4-NOT transcription complex protein, putative (TAIR:AT3G44240.1); Has 612 Blast hits to 611 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 216; Fungi - 93; Plants - 206; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).  protein_id AT1G06450.1p  transcript_id AT1G06450.1  protein_id AT1G06450.1p  transcript_id AT1G06450.1  
At1g06460	chr1:001969310	0.0	C/1969310-1969414,1968784-1968906,1968512-1968628,1968226-1968421,1967864-1967978,1967603-1967767,1967308-1967344	AT1G06460.1  CDS  gene_syn ACD31.2, ACD32.1, ALPHA-CRYSTALLIN DOMAIN 31.2, ALPHA-CRYSTALLIN DOMAIN 32.1, F12K11.19, F12K11_19  gene ACD32.1  function ACD32.1 encodes an alpha-crystallin domain containing protein with homology to small heat shock proteins.  go_component peroxisome|GO:0005777|17951448|IDA  go_process response to heat|GO:0009408||ISS  product ACD32.1 (ALPHA-CRYSTALLIN DOMAIN 32.1)  note ALPHA-CRYSTALLIN DOMAIN 32.1 (ACD32.1); INVOLVED IN: response to heat; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: AT-HSP17.6A (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.6A); unfolded protein binding (TAIR:AT5G12030.1); Has 2313 Blast hits to 2313 proteins in 606 species: Archae - 19; Bacteria - 1346; Metazoa - 0; Fungi - 119; Plants - 506; Viruses - 0; Other Eukaryotes - 323 (source: NCBI BLink).  protein_id AT1G06460.1p  transcript_id AT1G06460.1  protein_id AT1G06460.1p  transcript_id AT1G06460.1  
At1g06470	chr1:001970726	0.0	W/1970726-1970997,1971083-1971252,1971478-1971563,1971672-1971721,1971823-1971890,1972031-1972131,1972267-1972279,1972388-1972572,1972711-1972797,1973223-1973317,1973423-1973540	AT1G06470.1  CDS  gene_syn F12K11.18, F12K11_18  go_component membrane|GO:0016020|11152613|ISS  product phosphate translocator-related  note phosphate translocator-related; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: phosphate translocator-related (TAIR:AT5G25400.1); Has 1538 Blast hits to 1535 proteins in 209 species: Archae - 2; Bacteria - 63; Metazoa - 491; Fungi - 247; Plants - 571; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).  protein_id AT1G06470.1p  transcript_id AT1G06470.1  protein_id AT1G06470.1p  transcript_id AT1G06470.1  
At1g06470	chr1:001970726	0.0	W/1970726-1970997,1971083-1971252,1971478-1971563,1971672-1971721,1971823-1971890,1972031-1972131,1972267-1972279,1972388-1972572,1972711-1972797,1973223-1973317,1973423-1973540	AT1G06470.2  CDS  gene_syn F12K11.18, F12K11_18  go_component membrane|GO:0016020|11152613|ISS  product phosphate translocator-related  note phosphate translocator-related; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: phosphate translocator-related (TAIR:AT5G25400.1); Has 1538 Blast hits to 1535 proteins in 209 species: Archae - 2; Bacteria - 63; Metazoa - 491; Fungi - 247; Plants - 571; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).  protein_id AT1G06470.2p  transcript_id AT1G06470.2  protein_id AT1G06470.2p  transcript_id AT1G06470.2  
At1g06475	chr1:001973992	0.0	C/1973992-1974273	AT1G06475.1  CDS  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; Has 19 Blast hits to 19 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G06475.1p  transcript_id AT1G06475.1  protein_id AT1G06475.1p  transcript_id AT1G06475.1  
At1g06480	chr1:001978084	0.0	W/1978084-1978157	AT1G06480.1  tRNA  gene_syn 51438.TRNA-ILE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ile (anticodon: AAT)  transcript_id AT1G06480.1  
At1g06490	chr1:001978762	0.0	W/1978762-1978996,1979085-1979185,1979322-1979434,1979531-1979618,1979708-1979818,1979898-1980050,1980146-1980235,1980312-1980403,1980528-1980651,1980812-1980946,1981033-1981109,1981190-1981280,1981454-1981576,1981659-1981776,1981858-1982242,1982478-1982538,1982763-1982844,1982926-1982975,1983046-1983132,1983257-1983361,1983454-1983548,1983648-1983729,1983814-1983977,1984079-1984202,1984307-1984407,1984559-1984670,1984750-1984901,1985074-1985183,1985260-1985379,1985459-1985527,1985689-1985878,1985959-1986070,1986231-1986353,1986428-1986546,1986644-1986727,1986914-1987026,1987105-1987334,1987436-1988233,1988320-1988370,1988525-1988710,1988801-1989046	AT1G06490.1  CDS  gene_syn ATGSL07, F12K11.17, F12K11_17, atgsl7, glucan synthase-like 7, gsl07  gene ATGSL07  function encodes a gene similar to callose synthase  go_component 1,3-beta-glucan synthase complex|GO:0000148||IEA  go_component membrane|GO:0016020||IEA  go_process 1,3-beta-glucan biosynthetic process|GO:0006075||IEA  go_component 1,3-beta-glucan synthase complex|GO:0000148||ISS  go_process 1,3-beta-glucan biosynthetic process|GO:0006075||ISS  go_function 1,3-beta-glucan synthase activity|GO:0003843||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product ATGSL07 (glucan synthase-like 7); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups  note glucan synthase-like 7 (ATGSL07); FUNCTIONS IN: transferase activity, transferring glycosyl groups, 1,3-beta-glucan synthase activity; INVOLVED IN: 1,3-beta-glucan biosynthetic process; LOCATED IN: 1,3-beta-glucan synthase complex, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 48 (InterPro:IPR003440); BEST Arabidopsis thaliana protein match is: ATGSL11 (glucan synthase-like 11); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups (TAIR:AT3G59100.1); Has 839 Blast hits to 599 proteins in 104 species: Archae - 0; Bacteria - 2; Metazoa - 7; Fungi - 546; Plants - 258; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G06490.1p  transcript_id AT1G06490.1  protein_id AT1G06490.1p  transcript_id AT1G06490.1  
At1g06500	chr1:001990176	0.0	W/1990176-1990586	AT1G06500.1  CDS  gene_syn F12K11.25, F12K11_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G06500.1p  transcript_id AT1G06500.1  protein_id AT1G06500.1p  transcript_id AT1G06500.1  
At1g06500	chr1:001990176	0.0	W/1990176-1990586	AT1G06500.2  CDS  gene_syn F12K11.25, F12K11_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G06500.2p  transcript_id AT1G06500.2  protein_id AT1G06500.2p  transcript_id AT1G06500.2  
At1g06500	chr1:001990176	0.0	W/1990176-1990586	AT1G06500.3  CDS  gene_syn F12K11.25, F12K11_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G06500.3p  transcript_id AT1G06500.3  protein_id AT1G06500.3p  transcript_id AT1G06500.3  
At1g06500	chr1:001990176	0.0	W/1990176-1990586	AT1G06500.4  CDS  gene_syn F12K11.25, F12K11_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G06500.4p  transcript_id AT1G06500.4  protein_id AT1G06500.4p  transcript_id AT1G06500.4  
At1g06515	chr1:001991884	0.0	C/1991884-1991968,1991443-1991515,1990951-1990963	AT1G06515.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30942.1); Has 42 Blast hits to 42 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 10; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G06515.1p  transcript_id AT1G06515.1  protein_id AT1G06515.1p  transcript_id AT1G06515.1  
At1g06510	chr1:001992389	0.0	W/1992389-1992545,1992707-1992906,1993024-1993460,1993544-1993583	AT1G06510.1  CDS  gene_syn F12K11.16, F12K11_16  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 293 Blast hits to 288 proteins in 116 species: Archae - 4; Bacteria - 87; Metazoa - 85; Fungi - 34; Plants - 11; Viruses - 2; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT1G06510.1p  transcript_id AT1G06510.1  protein_id AT1G06510.1p  transcript_id AT1G06510.1  
At1g06520	chr1:001995180	0.0	C/1995180-1996067,1994170-1995039	AT1G06520.1  CDS  gene_syn ATGPAT1, F12K11.15, F12K11_15, GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 1, GPAT1  gene GPAT1  function Encodes a membrane associated mitochondrial localized protein with glycerol-3-phosphate acyltransferase activity.Expressed in flower buds and siliques. Homozygous mutant plants are male sterile and have abnormal glycerolipid levels.  go_component mitochondrion|GO:0005739|12897259|IDA  go_component membrane|GO:0016020|12897259|IDA  go_process metabolic process|GO:0008152||ISS  go_process pollen sperm cell differentiation|GO:0048235|12897259|IMP  go_function 1-acylglycerol-3-phosphate O-acyltransferase activity|GO:0003841|12897259|IGI  go_function acyltransferase activity|GO:0008415||ISS  product GPAT1 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 1); 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase  note GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 1 (GPAT1); FUNCTIONS IN: 1-acylglycerol-3-phosphate O-acyltransferase activity, acyltransferase activity; INVOLVED IN: pollen sperm cell differentiation, metabolic process; LOCATED IN: mitochondrion, membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: GPAT2 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2); acyltransferase (TAIR:AT1G02390.1); Has 193 Blast hits to 188 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 7; Fungi - 0; Plants - 181; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G06520.1p  transcript_id AT1G06520.1  protein_id AT1G06520.1p  transcript_id AT1G06520.1  
At1g06530	chr1:002001625	0.0	W/2001625-2002596	AT1G06530.1  CDS  gene_syn F12K11.14, F12K11_14  go_component plasma membrane|GO:0005886|17151019|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  product myosin heavy chain-related  note myosin heavy chain-related; LOCATED IN: mitochondrion, plasma membrane, plastid; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58840.2); Has 115779 Blast hits to 52346 proteins in 2082 species: Archae - 1688; Bacteria - 13782; Metazoa - 57957; Fungi - 9395; Plants - 4647; Viruses - 508; Other Eukaryotes - 27802 (source: NCBI BLink).  protein_id AT1G06530.1p  transcript_id AT1G06530.1  protein_id AT1G06530.1p  transcript_id AT1G06530.1  
At1g06540	chr1:002003112	0.0	C/2003112-2003393,2002908-2003003	AT1G06540.1  CDS  gene_syn F12K11.13, F12K11_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, sepal, flower, carpel, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30930.1); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G06540.1p  transcript_id AT1G06540.1  protein_id AT1G06540.1p  transcript_id AT1G06540.1  
At1g06550	chr1:002006532	0.0	C/2006532-2006564,2006351-2006434,2006196-2006264,2006053-2006116,2005887-2005960,2005724-2005807,2005550-2005634,2005386-2005471,2005049-2005170,2004867-2004927,2004688-2004786,2004350-2004451,2004193-2004234,2003988-2004097,2003834-2003882	AT1G06550.1  CDS  gene_syn F12K11.12, F12K11_12  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process fatty acid beta-oxidation|GO:0006635||ISS  go_function 3-hydroxyisobutyryl-CoA hydrolase activity|GO:0003860||ISS  product enoyl-CoA hydratase/isomerase family protein  note enoyl-CoA hydratase/isomerase family protein; FUNCTIONS IN: 3-hydroxyisobutyryl-CoA hydrolase activity, catalytic activity; INVOLVED IN: fatty acid beta-oxidation, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1); 3-hydroxyisobutyryl-CoA hydrolase (TAIR:AT5G65940.1); Has 18301 Blast hits to 18297 proteins in 1228 species: Archae - 169; Bacteria - 10699; Metazoa - 998; Fungi - 428; Plants - 255; Viruses - 0; Other Eukaryotes - 5752 (source: NCBI BLink).  protein_id AT1G06550.1p  transcript_id AT1G06550.1  protein_id AT1G06550.1p  transcript_id AT1G06550.1  
At1g06560	chr1:002007660	0.0	W/2007660-2007898,2008186-2008474,2008723-2008870,2009261-2009398,2009497-2009559,2009726-2009847,2010017-2010248,2010559-2010770,2011087-2011187,2011354-2011435,2011539-2011600,2011713-2011824	AT1G06560.1  CDS  gene_syn F12K11.10, F12K11_10  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product NOL1/NOP2/sun family protein  note NOL1/NOP2/sun family protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678), PUA-like (InterPro:IPR015947), Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site (InterPro:IPR018314), PUA (InterPro:IPR002478); BEST Arabidopsis thaliana protein match is: nucleolar protein, putative (TAIR:AT4G26600.1); Has 7921 Blast hits to 5034 proteins in 1248 species: Archae - 364; Bacteria - 5099; Metazoa - 733; Fungi - 277; Plants - 171; Viruses - 0; Other Eukaryotes - 1277 (source: NCBI BLink).  protein_id AT1G06560.1p  transcript_id AT1G06560.1  protein_id AT1G06560.1p  transcript_id AT1G06560.1  
At1g06570	chr1:002012297	0.0	C/2012297-2013543,2012015-2012189	AT1G06570.1  CDS  gene_syn 4-HYDROXYPHENYLPYRUVATE DIOXYGENASE, F12K11.9, F12K11_9, HPD, P-HYDROXYPHENYLPYRUVATE DIOXYGENASE, PDS1, PHYTOENE DESATURATION 1  gene PDS1  function Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants.  go_component mitochondrion|GO:0005739|14671022|IDA  go_component cytosol|GO:0005829|10198110|IDA  go_component chloroplast|GO:0009507|8718624|NAS  go_process vitamin E biosynthetic process|GO:0010189|8718624|IMP  go_process plastoquinone biosynthetic process|GO:0010236|8718624|IMP  go_process carotenoid biosynthetic process|GO:0016117|8718624|IMP  go_function 4-hydroxyphenylpyruvate dioxygenase activity|GO:0003868|9701587|IDA  product PDS1 (PHYTOENE DESATURATION 1); 4-hydroxyphenylpyruvate dioxygenase  note PHYTOENE DESATURATION 1 (PDS1); FUNCTIONS IN: 4-hydroxyphenylpyruvate dioxygenase activity; INVOLVED IN: carotenoid biosynthetic process, plastoquinone biosynthetic process, vitamin E biosynthetic process; LOCATED IN: cytosol, mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 4-hydroxyphenylpyruvate dioxygenase (InterPro:IPR005956), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); Has 1641 Blast hits to 1641 proteins in 517 species: Archae - 2; Bacteria - 1029; Metazoa - 183; Fungi - 110; Plants - 55; Viruses - 0; Other Eukaryotes - 262 (source: NCBI BLink).  protein_id AT1G06570.1p  transcript_id AT1G06570.1  protein_id AT1G06570.1p  transcript_id AT1G06570.1  
At1g06570	chr1:002012304	0.0	C/2012304-2013543,2012173-2012189	AT1G06570.2  CDS  gene_syn 4-HYDROXYPHENYLPYRUVATE DIOXYGENASE, F12K11.9, F12K11_9, HPD, P-HYDROXYPHENYLPYRUVATE DIOXYGENASE, PDS1, PHYTOENE DESATURATION 1  gene PDS1  function Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants.  go_component mitochondrion|GO:0005739|14671022|IDA  go_component cytosol|GO:0005829|10198110|IDA  go_component chloroplast|GO:0009507|8718624|NAS  go_process vitamin E biosynthetic process|GO:0010189|8718624|IMP  go_process plastoquinone biosynthetic process|GO:0010236|8718624|IMP  go_process carotenoid biosynthetic process|GO:0016117|8718624|IMP  go_function 4-hydroxyphenylpyruvate dioxygenase activity|GO:0003868|9701587|IDA  product PDS1 (PHYTOENE DESATURATION 1); 4-hydroxyphenylpyruvate dioxygenase  note PHYTOENE DESATURATION 1 (PDS1); FUNCTIONS IN: 4-hydroxyphenylpyruvate dioxygenase activity; INVOLVED IN: carotenoid biosynthetic process, plastoquinone biosynthetic process, vitamin E biosynthetic process; LOCATED IN: cytosol, mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 4-hydroxyphenylpyruvate dioxygenase (InterPro:IPR005956), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360).  protein_id AT1G06570.2p  transcript_id AT1G06570.2  protein_id AT1G06570.2p  transcript_id AT1G06570.2  
At1g06580	chr1:002014440	0.0	C/2014440-2015942	AT1G06580.1  CDS  gene_syn F12K11.8, F12K11_8  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: stem, embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, C globular stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G64580.1); Has 24093 Blast hits to 5935 proteins in 175 species: Archae - 4; Bacteria - 16; Metazoa - 695; Fungi - 411; Plants - 21894; Viruses - 0; Other Eukaryotes - 1073 (source: NCBI BLink).  protein_id AT1G06580.1p  transcript_id AT1G06580.1  protein_id AT1G06580.1p  transcript_id AT1G06580.1  
At1g06590	chr1:002024335	0.0	C/2024335-2024505,2023863-2024022,2023656-2023777,2023050-2023284,2022453-2022630,2022278-2022362,2022094-2022179,2021777-2021906,2021373-2021405,2020749-2020997,2020029-2020106,2019683-2019945,2018871-2018930,2018652-2018719,2018241-2018346,2017911-2018052,2017690-2017788,2017124-2017388,2016929-2016996,2016504-2016656	AT1G06590.1  CDS  gene_syn F12K11.7, F12K11_7  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; Has 297 Blast hits to 208 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 218; Fungi - 51; Plants - 21; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G06590.1p  transcript_id AT1G06590.1  protein_id AT1G06590.1p  transcript_id AT1G06590.1  
At1g06610	chr1:002025356	0.0	W/2025356-2025428	AT1G06610.1  tRNA  gene_syn 51438.TRNA-ALA-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: AGC)  transcript_id AT1G06610.1  
At1g06620	chr1:002025618	0.0	W/2025618-2026141,2026434-2026755,2026843-2027094	AT1G06620.1  CDS  gene_syn F12K11.24, F12K11_24  function encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function 2-oxoglutarate-dependent dioxygenase activity|GO:0010302||ISS  product 2-oxoglutarate-dependent dioxygenase, putative  note 2-oxoglutarate-dependent dioxygenase, putative; FUNCTIONS IN: 2-oxoglutarate-dependent dioxygenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase, putative (TAIR:AT3G61400.1); Has 5741 Blast hits to 5720 proteins in 691 species: Archae - 0; Bacteria - 728; Metazoa - 128; Fungi - 561; Plants - 3076; Viruses - 0; Other Eukaryotes - 1248 (source: NCBI BLink).  protein_id AT1G06620.1p  transcript_id AT1G06620.1  protein_id AT1G06620.1p  transcript_id AT1G06620.1  
At1g06630	chr1:002028071	0.0	W/2028071-2028976,2029050-2029199,2029287-2029376,2030003-2030207,2030310-2030344	AT1G06630.3  CDS  gene_syn F12K11.23, F12K11_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G60040.1).  protein_id AT1G06630.3p  transcript_id AT1G06630.3  protein_id AT1G06630.3p  transcript_id AT1G06630.3  
At1g06630	chr1:002028071	0.0	W/2028071-2028976,2029050-2029199,2029287-2029376,2030003-2030207,2031091-2031173	AT1G06630.1  CDS  gene_syn F12K11.23, F12K11_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G60040.1); Has 1188 Blast hits to 1155 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1187; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G06630.1p  transcript_id AT1G06630.1  protein_id AT1G06630.1p  transcript_id AT1G06630.1  
At1g06630	chr1:002028071	0.0	W/2028071-2028976,2029050-2029199,2029287-2029442	AT1G06630.2  CDS  gene_syn F12K11.23, F12K11_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G60040.1).  protein_id AT1G06630.2p  transcript_id AT1G06630.2  protein_id AT1G06630.2p  transcript_id AT1G06630.2  
At1g06640	chr1:002032366	0.0	W/2032366-2032898,2033070-2033385,2033516-2033527	AT1G06640.3  CDS  gene_syn F12K11.27, F12K11_27  function encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function 2-oxoglutarate-dependent dioxygenase activity|GO:0010302||ISS  product 2-oxoglutarate-dependent dioxygenase, putative  note 2-oxoglutarate-dependent dioxygenase, putative; FUNCTIONS IN: 2-oxoglutarate-dependent dioxygenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase, putative (TAIR:AT1G06650.2).  protein_id AT1G06640.3p  transcript_id AT1G06640.3  protein_id AT1G06640.3p  transcript_id AT1G06640.3  
At1g06640	chr1:002032366	0.0	W/2032366-2032898,2033070-2033391,2033521-2033775	AT1G06640.1  CDS  gene_syn F12K11.27, F12K11_27  function encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function 2-oxoglutarate-dependent dioxygenase activity|GO:0010302||ISS  product 2-oxoglutarate-dependent dioxygenase, putative  note 2-oxoglutarate-dependent dioxygenase, putative; FUNCTIONS IN: 2-oxoglutarate-dependent dioxygenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase, putative (TAIR:AT1G06650.2); Has 5603 Blast hits to 5588 proteins in 675 species: Archae - 0; Bacteria - 695; Metazoa - 120; Fungi - 485; Plants - 3058; Viruses - 0; Other Eukaryotes - 1245 (source: NCBI BLink).  protein_id AT1G06640.1p  transcript_id AT1G06640.1  protein_id AT1G06640.1p  transcript_id AT1G06640.1  
At1g06640	chr1:002032366	0.0	W/2032366-2032898,2033070-2033505	AT1G06640.2  CDS  gene_syn F12K11.27, F12K11_27  function encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function 2-oxoglutarate-dependent dioxygenase activity|GO:0010302||ISS  product 2-oxoglutarate-dependent dioxygenase, putative  note 2-oxoglutarate-dependent dioxygenase, putative; FUNCTIONS IN: 2-oxoglutarate-dependent dioxygenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase, putative (TAIR:AT1G06650.2); Has 4655 Blast hits to 4643 proteins in 620 species: Archae - 0; Bacteria - 609; Metazoa - 90; Fungi - 325; Plants - 2905; Viruses - 0; Other Eukaryotes - 726 (source: NCBI BLink).  protein_id AT1G06640.2p  transcript_id AT1G06640.2  protein_id AT1G06640.2p  transcript_id AT1G06640.2  
At1g06645	chr1:002034229	0.0	W/2034229-2034752,2034824-2035145,2035245-2035499	AT1G06645.1  CDS  gene_syn F12K11.6  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product oxidoreductase  note oxidoreductase; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase, putative (TAIR:AT1G06650.2).  protein_id AT1G06645.1p  transcript_id AT1G06645.1  protein_id AT1G06645.1p  transcript_id AT1G06645.1  
At1g06650	chr1:002035909	0.0	W/2035909-2036441,2036520-2036841,2036932-2037186	AT1G06650.2  CDS  gene_syn F12K11.26, F12K11_26  function encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function 2-oxoglutarate-dependent dioxygenase activity|GO:0010302||ISS  product 2-oxoglutarate-dependent dioxygenase, putative  note 2-oxoglutarate-dependent dioxygenase, putative; FUNCTIONS IN: 2-oxoglutarate-dependent dioxygenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase, putative (TAIR:AT1G06640.1); Has 5656 Blast hits to 5644 proteins in 679 species: Archae - 0; Bacteria - 695; Metazoa - 122; Fungi - 527; Plants - 3059; Viruses - 0; Other Eukaryotes - 1253 (source: NCBI BLink).  protein_id AT1G06650.2p  transcript_id AT1G06650.2  protein_id AT1G06650.2p  transcript_id AT1G06650.2  
At1g06650	chr1:002035909	0.0	W/2035909-2036441,2036520-2036841,2036958-2037047	AT1G06650.1  CDS  gene_syn F12K11.26, F12K11_26  function encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function 2-oxoglutarate-dependent dioxygenase activity|GO:0010302||ISS  product 2-oxoglutarate-dependent dioxygenase, putative  note 2-oxoglutarate-dependent dioxygenase, putative; FUNCTIONS IN: 2-oxoglutarate-dependent dioxygenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase, putative (TAIR:AT1G06640.2); Has 4995 Blast hits to 4984 proteins in 635 species: Archae - 0; Bacteria - 632; Metazoa - 90; Fungi - 351; Plants - 2942; Viruses - 0; Other Eukaryotes - 980 (source: NCBI BLink).  protein_id AT1G06650.1p  transcript_id AT1G06650.1  protein_id AT1G06650.1p  transcript_id AT1G06650.1  
At1g06660	chr1:002039978	0.0	C/2039978-2040148,2039687-2039735,2039500-2039582,2038723-2038943,2037809-2038544,2037639-2037730,2037461-2037554	AT1G06660.1  CDS  gene_syn F12K11.5, F12K11_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30820.2); Has 131 Blast hits to 108 proteins in 29 species: Archae - 0; Bacteria - 17; Metazoa - 22; Fungi - 20; Plants - 60; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G06660.1p  transcript_id AT1G06660.1  protein_id AT1G06660.1p  transcript_id AT1G06660.1  
At1g06670	chr1:002040567	0.0	W/2040567-2040669,2040881-2040971,2041075-2041507,2041630-2041704,2041838-2041882,2042220-2042313,2042424-2042482,2042581-2042706,2042962-2043014,2043280-2043313,2043396-2043485,2043590-2044576,2044707-2045786,2045873-2047333	AT1G06670.1  CDS  gene_syn DEIH-BOX RNA/DNA HELICASE, F12K11.4, F12K11_4, NIH, NUCLEAR DEIH-BOXHELICASE  gene NIH  function nuclear DEIH-box helicase (NIH) encoding a putative RNA and/or DNA helicase homologous to a group of nucleic acid helicases from the DEAD/H family with nuclear DEIH-box helicase (NIH) distinct N- and C-terminal regions that differ from animal DEIH proteins  go_component nucleus|GO:0005634|10471743|IDA  go_process DNA metabolic process|GO:0006259|10471743|ISS  go_function DNA binding|GO:0003677|10471743|IDA  go_function DNA helicase activity|GO:0003678|10471743|ISS  product NIH (NUCLEAR DEIH-BOXHELICASE); DNA binding / DNA helicase  note NUCLEAR DEIH-BOXHELICASE (NIH); FUNCTIONS IN: DNA helicase activity, DNA binding; INVOLVED IN: DNA metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated region (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Region of unknown function DUF1605 (InterPro:IPR011709), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Single-stranded nucleic acid binding R3H (InterPro:IPR001374), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM); ATP binding / helicase/ nucleic acid binding (TAIR:AT2G30800.1); Has 20232 Blast hits to 12558 proteins in 1124 species: Archae - 10; Bacteria - 4348; Metazoa - 5452; Fungi - 2011; Plants - 697; Viruses - 268; Other Eukaryotes - 7446 (source: NCBI BLink).  protein_id AT1G06670.1p  transcript_id AT1G06670.1  protein_id AT1G06670.1p  transcript_id AT1G06670.1  
At1g06680	chr1:002047940	0.0	W/2047940-2048186,2048297-2048529,2048620-2048670,2048926-2049186	AT1G06680.1  CDS  gene_syn F12K11.3, F12K11_3, OE23, OEE2, OXYGEN EVOLVING COMPLEX SUBUNIT 23 KDA, OXYGEN-EVOLVING ENHANCER PROTEIN 2, PHOTOSYSTEM II SUBUNIT P, PHOTOSYSTEM II SUBUNIT P-1, PSBP-1, PSII-P  gene PSBP-1  function Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_component chloroplast thylakoid|GO:0009534|11526245|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  go_component chloroplast thylakoid lumen|GO:0009543||ISS  go_component oxygen evolving complex|GO:0009654||ISS  go_component extrinsic to membrane|GO:0019898|11719511|TAS  go_component chloroplast photosystem II|GO:0030095||ISS  go_process response to light intensity|GO:0009642|16282331|IEP  go_process photosynthesis, light reaction|GO:0019684|9039496|TAS  go_function poly(U) binding|GO:0008266|17511964|IDA  product PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1); poly(U) binding  note PHOTOSYSTEM II SUBUNIT P-1 (PSBP-1); FUNCTIONS IN: poly(U) binding; INVOLVED IN: photosynthesis, light reaction, defense response to bacterium, response to light intensity; LOCATED IN: in 12 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123), Twin-arginine translocation pathway signal (InterPro:IPR006311); BEST Arabidopsis thaliana protein match is: PSBP-2 (photosystem II subunit P-2); calcium ion binding (TAIR:AT2G30790.1); Has 210 Blast hits to 210 proteins in 63 species: Archae - 0; Bacteria - 40; Metazoa - 0; Fungi - 0; Plants - 161; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G06680.1p  transcript_id AT1G06680.1  protein_id AT1G06680.1p  transcript_id AT1G06680.1  
At1g06680	chr1:002048076	0.0	W/2048076-2048190,2048297-2048529,2048620-2048670,2048926-2049186	AT1G06680.2  CDS  gene_syn F12K11.3, F12K11_3, OE23, OEE2, OXYGEN EVOLVING COMPLEX SUBUNIT 23 KDA, OXYGEN-EVOLVING ENHANCER PROTEIN 2, PHOTOSYSTEM II SUBUNIT P, PHOTOSYSTEM II SUBUNIT P-1, PSBP-1, PSII-P  gene PSBP-1  function Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution.  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_component chloroplast thylakoid|GO:0009534|11526245|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  go_component chloroplast thylakoid lumen|GO:0009543||ISS  go_component oxygen evolving complex|GO:0009654||ISS  go_component extrinsic to membrane|GO:0019898|11719511|TAS  go_component chloroplast photosystem II|GO:0030095||ISS  go_process response to light intensity|GO:0009642|16282331|IEP  go_process photosynthesis, light reaction|GO:0019684|9039496|TAS  go_function poly(U) binding|GO:0008266|17511964|IDA  product PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1); poly(U) binding  note PHOTOSYSTEM II SUBUNIT P-1 (PSBP-1); FUNCTIONS IN: poly(U) binding; INVOLVED IN: photosynthesis, light reaction, defense response to bacterium, response to light intensity; LOCATED IN: in 9 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); BEST Arabidopsis thaliana protein match is: PSBP-2 (photosystem II subunit P-2); calcium ion binding (TAIR:AT2G30790.1); Has 201 Blast hits to 201 proteins in 62 species: Archae - 0; Bacteria - 40; Metazoa - 0; Fungi - 0; Plants - 152; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G06680.2p  transcript_id AT1G06680.2  protein_id AT1G06680.2p  transcript_id AT1G06680.2  
At1g06690	chr1:002051799	0.0	C/2051799-2052039,2051602-2051693,2051484-2051524,2051232-2051396,2051132-2051154,2050960-2051031,2050703-2050870,2050474-2050556,2050096-2050158,2049742-2049927	AT1G06690.1  CDS  gene_syn F12K11.2, F12K11_2  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_process oxidation reduction|GO:0055114||IEA  go_function ATP binding|GO:0005524||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function ATPase activity|GO:0016887||IEA  go_function aldo-keto reductase activity|GO:0004033||ISS  product aldo/keto reductase family protein  note aldo/keto reductase family protein; FUNCTIONS IN: oxidoreductase activity, aldo-keto reductase activity, ATPase activity, ATP binding; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Aldo/keto reductase, conserved site (InterPro:IPR018170), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: aldo/keto reductase family protein (TAIR:AT5G53580.1); Has 18029 Blast hits to 18016 proteins in 1454 species: Archae - 258; Bacteria - 9842; Metazoa - 1647; Fungi - 1390; Plants - 743; Viruses - 0; Other Eukaryotes - 4149 (source: NCBI BLink).  protein_id AT1G06690.1p  transcript_id AT1G06690.1  protein_id AT1G06690.1p  transcript_id AT1G06690.1  
At1g06700	chr1:002054468	0.0	C/2054468-2054552,2053995-2054248,2053786-2053912,2053375-2053648,2053158-2053290,2052986-2053072,2052750-2052875	AT1G06700.1  CDS  gene_syn F4H5.21, F4H5_21  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product serine/threonine protein kinase, putative  note serine/threonine protein kinase, putative; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase, active site (InterPro:IPR008266), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase, putative (TAIR:AT2G30740.1); Has 80916 Blast hits to 79948 proteins in 3116 species: Archae - 48; Bacteria - 7582; Metazoa - 35663; Fungi - 6087; Plants - 17766; Viruses - 321; Other Eukaryotes - 13449 (source: NCBI BLink).  protein_id AT1G06700.1p  transcript_id AT1G06700.1  protein_id AT1G06700.1p  transcript_id AT1G06700.1  
At1g06700	chr1:002054468	0.0	C/2054468-2054552,2053995-2054248,2053786-2053912,2053375-2053648,2053158-2053290,2052986-2053072,2052750-2052875	AT1G06700.2  CDS  gene_syn F4H5.21, F4H5_21  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product serine/threonine protein kinase, putative  note serine/threonine protein kinase, putative; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase, active site (InterPro:IPR008266), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase, putative (TAIR:AT2G30740.1); Has 80916 Blast hits to 79948 proteins in 3116 species: Archae - 48; Bacteria - 7582; Metazoa - 35663; Fungi - 6087; Plants - 17766; Viruses - 321; Other Eukaryotes - 13449 (source: NCBI BLink).  protein_id AT1G06700.2p  transcript_id AT1G06700.2  protein_id AT1G06700.2p  transcript_id AT1G06700.2  
At1g06710	chr1:002057279	0.0	C/2057279-2060119	AT1G06710.1  CDS  gene_syn F4H5.20, F4H5_20  go_component cellular_component|GO:0005575||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G06920.1); Has 27767 Blast hits to 6056 proteins in 188 species: Archae - 6; Bacteria - 22; Metazoa - 702; Fungi - 687; Plants - 24830; Viruses - 0; Other Eukaryotes - 1520 (source: NCBI BLink).  protein_id AT1G06710.1p  transcript_id AT1G06710.1  protein_id AT1G06710.1p  transcript_id AT1G06710.1  
At1g06720	chr1:002067150	0.0	C/2067150-2067281,2066902-2067048,2066733-2066823,2066496-2066614,2066132-2066322,2065833-2066043,2065132-2065372,2064636-2064925,2064119-2064299,2063760-2063956,2063365-2063671,2062892-2062944,2062603-2062821,2062196-2062435,2061528-2061737,2061197-2061445,2060872-2061075,2060615-2060776	AT1G06720.1  CDS  gene_syn F4H5.19, F4H5_19  go_component nucleus|GO:0005634||IEA  go_process ribosome biogenesis|GO:0042254||IEA  product unknown protein  note INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948), Protein of unknown function DUF663 (InterPro:IPR007034); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G42440.1); Has 7944 Blast hits to 5342 proteins in 373 species: Archae - 33; Bacteria - 667; Metazoa - 2609; Fungi - 1045; Plants - 414; Viruses - 80; Other Eukaryotes - 3096 (source: NCBI BLink).  protein_id AT1G06720.1p  transcript_id AT1G06720.1  protein_id AT1G06720.1p  transcript_id AT1G06720.1  
At1g06730	chr1:002067633	0.0	W/2067633-2068010,2068249-2068496,2068985-2069276,2069358-2069510,2069654-2070049	AT1G06730.1  CDS  gene_syn F4H5.18, F4H5_18  go_process D-ribose catabolic process|GO:0019303||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_function kinase activity|GO:0016301||ISS  product pfkB-type carbohydrate kinase family protein  note pfkB-type carbohydrate kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: D-ribose catabolic process; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611); BEST Arabidopsis thaliana protein match is: pfkB-type carbohydrate kinase family protein (TAIR:AT3G59480.1); Has 8525 Blast hits to 8520 proteins in 1199 species: Archae - 160; Bacteria - 6264; Metazoa - 85; Fungi - 26; Plants - 192; Viruses - 0; Other Eukaryotes - 1798 (source: NCBI BLink).  protein_id AT1G06730.1p  transcript_id AT1G06730.1  protein_id AT1G06730.1p  transcript_id AT1G06730.1  
At1g06740	chr1:002070737	0.0	W/2070737-2073535	AT1G06740.1  mRNA_TE_gene  pseudo  gene_syn F4H5.17, F4H5_17  note Transposable element gene, Mutator-like transposase family, has a 2.7e-53 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At1g06750	chr1:002073882	0.0	W/2073882-2073891,2073968-2074153,2074247-2074470,2074555-2074616,2074722-2074943,2075058-2075178,2075268-2075590,2075680-2075824,2076084-2076350	AT1G06750.1  CDS  gene_syn F4H5.16, F4H5_16  product unknown protein  note unknown protein; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30630.1); Has 124 Blast hits to 124 proteins in 28 species: Archae - 0; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G06750.1p  transcript_id AT1G06750.1  protein_id AT1G06750.1p  transcript_id AT1G06750.1  
At1g06760	chr1:002077416	0.0	C/2077416-2077616,2076687-2077310	AT1G06760.1  CDS  gene_syn F4H5.15, F4H5_15  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_component nucleosome|GO:0000786||ISS  go_process nucleosome assembly|GO:0006334||ISS  go_function DNA binding|GO:0003677||ISS  product histone H1, putative  note histone H1, putative; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Histone H5 (InterPro:IPR005819), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: histone H1.2 (TAIR:AT2G30620.1); Has 17858 Blast hits to 9233 proteins in 1074 species: Archae - 29; Bacteria - 6881; Metazoa - 4363; Fungi - 1008; Plants - 721; Viruses - 117; Other Eukaryotes - 4739 (source: NCBI BLink).  protein_id AT1G06760.1p  transcript_id AT1G06760.1  protein_id AT1G06760.1p  transcript_id AT1G06760.1  
At1g06770	chr1:002080470	0.0	C/2080470-2080658,2079877-2080307,2079717-2079767,2079512-2079584,2079222-2079401	AT1G06770.2  CDS  gene_syn DREB2A-INTERACTING PROTEIN 1, DRIP1, F4H5.14, F4H5_14  gene DRIP1  function Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. The DRIP1-GFP fusion protein is nuclear-localized. DRIP1 seems to be involved in regulating stress-related transcriptional changes and drought tolerance.  go_component nucleus|GO:0005634|18552202|IDA  go_process response to water deprivation|GO:0009414|18552202|IGI  go_function ubiquitin-protein ligase activity|GO:0004842|18552202|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product DRIP1 (DREB2A-INTERACTING PROTEIN 1); protein binding / ubiquitin-protein ligase/ zinc ion binding  note DREB2A-INTERACTING PROTEIN 1 (DRIP1); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: response to water deprivation; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: DRIP2 (DREB2A-INTERACTING PROTEIN 2); protein binding / ubiquitin-protein ligase/ zinc ion binding (TAIR:AT2G30580.1); Has 382 Blast hits to 325 proteins in 83 species: Archae - 0; Bacteria - 11; Metazoa - 171; Fungi - 34; Plants - 79; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).  protein_id AT1G06770.2p  transcript_id AT1G06770.2  protein_id AT1G06770.2p  transcript_id AT1G06770.2  
At1g06770	chr1:002081602	0.0	C/2081602-2081707,2081107-2081206,2080470-2080794,2079877-2080307,2079717-2079767,2079512-2079584,2079222-2079401	AT1G06770.1  CDS  gene_syn DREB2A-INTERACTING PROTEIN 1, DRIP1, F4H5.14, F4H5_14  gene DRIP1  function Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. The DRIP1-GFP fusion protein is nuclear-localized. DRIP1 seems to be involved in regulating stress-related transcriptional changes and drought tolerance.  go_component nucleus|GO:0005634|18552202|IDA  go_process response to water deprivation|GO:0009414|18552202|IGI  go_function ubiquitin-protein ligase activity|GO:0004842|18552202|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product DRIP1 (DREB2A-INTERACTING PROTEIN 1); protein binding / ubiquitin-protein ligase/ zinc ion binding  note DREB2A-INTERACTING PROTEIN 1 (DRIP1); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: response to water deprivation; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: DRIP2 (DREB2A-INTERACTING PROTEIN 2); protein binding / ubiquitin-protein ligase/ zinc ion binding (TAIR:AT2G30580.1); Has 1746 Blast hits to 1675 proteins in 159 species: Archae - 0; Bacteria - 16; Metazoa - 1247; Fungi - 109; Plants - 154; Viruses - 2; Other Eukaryotes - 218 (source: NCBI BLink).  protein_id AT1G06770.1p  transcript_id AT1G06770.1  protein_id AT1G06770.1p  transcript_id AT1G06770.1  
At1g06780	chr1:002083689	0.0	W/2083689-2083800,2083991-2084025,2084186-2084227,2084318-2084399,2084487-2084557,2084808-2085079,2085225-2085582,2085716-2086237,2086578-2086853	AT1G06780.1  CDS  gene_syn F4H5.13, F4H5_13, GAUT6, Galacturonosyltransferase 6  gene GAUT6  function Encodes a protein with putative galacturonosyltransferase activity.  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS  product GAUT6 (Galacturonosyltransferase 6); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups  note Galacturonosyltransferase 6 (GAUT6); FUNCTIONS IN: polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: LGT5 (LOS GLYCOSYLTRANSFERASE 5); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT2G30575.1); Has 706 Blast hits to 706 proteins in 109 species: Archae - 0; Bacteria - 139; Metazoa - 123; Fungi - 0; Plants - 432; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G06780.1p  transcript_id AT1G06780.1  protein_id AT1G06780.1p  transcript_id AT1G06780.1  
At1g06790	chr1:002087645	0.0	W/2087645-2087755,2087859-2087954,2088302-2088389,2088561-2088645,2088766-2088835,2088920-2089009,2089213-2089287	AT1G06790.1  CDS  gene_syn F4H5.12, F4H5_12  go_process transcription|GO:0006350||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_component cellular_component|GO:0005575||ND  go_process transcription|GO:0006350||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product RNA polymerase Rpb7 N-terminal domain-containing protein  note RNA polymerase Rpb7 N-terminal domain-containing protein; FUNCTIONS IN: DNA-directed RNA polymerase activity; INVOLVED IN: transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase Rpb7, N-terminal (InterPro:IPR005576), RNA polymerase III, subunit Rpc25 (InterPro:IPR013238); Has 625 Blast hits to 625 proteins in 198 species: Archae - 107; Bacteria - 0; Metazoa - 231; Fungi - 170; Plants - 43; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT1G06790.1p  transcript_id AT1G06790.1  protein_id AT1G06790.1p  transcript_id AT1G06790.1  
At1g06790	chr1:002087645	0.0	W/2087645-2087755,2087859-2087954,2088302-2088389,2088561-2088645,2088766-2088835,2088920-2089039	AT1G06790.2  CDS  gene_syn F4H5.12, F4H5_12  go_process transcription|GO:0006350||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_component cellular_component|GO:0005575||ND  go_process transcription|GO:0006350||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product RNA polymerase Rpb7 N-terminal domain-containing protein  note RNA polymerase Rpb7 N-terminal domain-containing protein; FUNCTIONS IN: DNA-directed RNA polymerase activity; INVOLVED IN: transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase Rpb7, N-terminal (InterPro:IPR005576), RNA polymerase III, subunit Rpc25 (InterPro:IPR013238); Has 610 Blast hits to 610 proteins in 194 species: Archae - 105; Bacteria - 0; Metazoa - 231; Fungi - 163; Plants - 41; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT1G06790.2p  transcript_id AT1G06790.2  protein_id AT1G06790.2p  transcript_id AT1G06790.2  
At1g06800	chr1:002090109	0.0	C/2090109-2091443	AT1G06800.2  CDS  gene_syn F4H5.11, F4H5_11  go_component chloroplast|GO:0009507||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product lipase class 3 family protein  note lipase class 3 family protein; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: lipase class 3 family protein (TAIR:AT2G30550.1); Has 898 Blast hits to 892 proteins in 175 species: Archae - 0; Bacteria - 139; Metazoa - 44; Fungi - 210; Plants - 298; Viruses - 3; Other Eukaryotes - 204 (source: NCBI BLink).  protein_id AT1G06800.2p  transcript_id AT1G06800.2  protein_id AT1G06800.2p  transcript_id AT1G06800.2  
At1g06800	chr1:002090146	0.0	C/2090146-2091443,2089538-2089787	AT1G06800.1  CDS  gene_syn F4H5.11, F4H5_11  go_component chloroplast|GO:0009507||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product lipase class 3 family protein  note lipase class 3 family protein; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: lipase class 3 family protein (TAIR:AT2G30550.2); Has 899 Blast hits to 893 proteins in 175 species: Archae - 0; Bacteria - 139; Metazoa - 44; Fungi - 208; Plants - 299; Viruses - 3; Other Eukaryotes - 206 (source: NCBI BLink).  protein_id AT1G06800.1p  transcript_id AT1G06800.1  protein_id AT1G06800.1p  transcript_id AT1G06800.1  
At1g06810	chr1:002092393	0.0	C/2092393-2092528,2091930-2092309,2091738-2091830	AT1G06810.1  CDS  gene_syn F4H5.25, F4H5_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05400.2); Has 43 Blast hits to 40 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G06810.1p  transcript_id AT1G06810.1  protein_id AT1G06810.1p  transcript_id AT1G06810.1  
At1g06820	chr1:002095804	0.0	C/2095804-2096220,2095485-2095691,2095309-2095408,2095069-2095151,2094911-2094967,2094681-2094833,2094496-2094574,2094234-2094382,2094016-2094150,2093793-2093906,2093521-2093631,2093312-2093420,2093145-2093218	AT1G06820.1  CDS  gene_syn CAROTENOID AND CHLOROPLAST REGULATION 2, CAROTENOID ISOMERASE, CCR2, CRTISO, F4H5.10, F4H5_10  gene CRTISO  function Encodes carotenoid isomerase. Catalyzes the isomerization of poly-cis-carotenoids to all-trans-carotenoids. Together with PDS and ZDS, CRTiso is required to complete the synthesis of lycopene from phytoene.  go_component chloroplast|GO:0009507||TAS  go_process etioplast organization|GO:0009662|11884677|IMP  go_process carotenoid biosynthetic process|GO:0016117|11884677|IGI  go_process carotenoid biosynthetic process|GO:0016117|11884677|TAS  go_process carotenoid biosynthetic process|GO:0016117|11884678|TAS  go_function carotenoid isomerase activity|GO:0046608|11884677|IGI  go_function carotenoid isomerase activity|GO:0046608|11884677|IMP  product CRTISO (CAROTENOID ISOMERASE); carotenoid isomerase  note CAROTENOID ISOMERASE (CRTISO); FUNCTIONS IN: carotenoid isomerase activity; INVOLVED IN: carotenoid biosynthetic process, etioplast organization; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal (InterPro:IPR003953); BEST Arabidopsis thaliana protein match is: amine oxidase family (TAIR:AT1G57770.1); Has 5143 Blast hits to 5092 proteins in 551 species: Archae - 117; Bacteria - 1701; Metazoa - 138; Fungi - 51; Plants - 84; Viruses - 0; Other Eukaryotes - 3052 (source: NCBI BLink).  protein_id AT1G06820.1p  transcript_id AT1G06820.1  protein_id AT1G06820.1p  transcript_id AT1G06820.1  
At1g06830	chr1:002097189	0.0	W/2097189-2097488	AT1G06830.1  CDS  gene_syn F4H5.9, F4H5_9  go_component endomembrane system|GO:0012505||IEA  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  product glutaredoxin family protein  note glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin family protein (TAIR:AT2G30540.1); Has 650 Blast hits to 649 proteins in 97 species: Archae - 0; Bacteria - 2; Metazoa - 174; Fungi - 56; Plants - 405; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G06830.1p  transcript_id AT1G06830.1  protein_id AT1G06830.1p  transcript_id AT1G06830.1  
At1g06840	chr1:002103406	0.0	C/2103406-2103479,2102808-2102954,2102653-2102724,2102484-2102555,2102266-2102409,2102078-2102149,2101853-2101924,2101661-2101735,2101310-2101378,2101138-2101206,2100934-2101005,2100730-2100816,2100553-2100621,2099851-2100353,2099468-2099626,2099077-2099360,2098943-2098994,2098489-2098739,2098276-2098410,2097854-2098195	AT1G06840.1  CDS  gene_syn F4H5.8, F4H5_8  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: ATP binding / kinase/ protein serine/threonine kinase (TAIR:AT5G01950.1); Has 135246 Blast hits to 100144 proteins in 3443 species: Archae - 81; Bacteria - 10553; Metazoa - 52595; Fungi - 7237; Plants - 46569; Viruses - 358; Other Eukaryotes - 17853 (source: NCBI BLink).  protein_id AT1G06840.1p  transcript_id AT1G06840.1  protein_id AT1G06840.1p  transcript_id AT1G06840.1  
At1g06850	chr1:002105233	0.0	W/2105233-2105693,2105774-2105906,2106018-2106102,2106184-2106246,2106354-2106364	AT1G06850.2  CDS  gene_syn Arabidopsis thaliana basic leucine zipper 52, AtbZIP52, F4H5.7, F4H5_7  gene AtbZIP52  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  product AtbZIP52 (Arabidopsis thaliana basic leucine zipper 52); DNA binding / transcription factor  note Arabidopsis thaliana basic leucine zipper 52 (AtbZIP52); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT2G40620.1); Has 1112 Blast hits to 1112 proteins in 140 species: Archae - 0; Bacteria - 8; Metazoa - 190; Fungi - 88; Plants - 786; Viruses - 2; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT1G06850.2p  transcript_id AT1G06850.2  protein_id AT1G06850.2p  transcript_id AT1G06850.2  
At1g06850	chr1:002105233	0.0	W/2105233-2105693,2105774-2105906,2106018-2106102,2106184-2106518	AT1G06850.1  CDS  gene_syn Arabidopsis thaliana basic leucine zipper 52, AtbZIP52, F4H5.7, F4H5_7  gene AtbZIP52  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  product AtbZIP52 (Arabidopsis thaliana basic leucine zipper 52); DNA binding / transcription factor  note Arabidopsis thaliana basic leucine zipper 52 (AtbZIP52); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT2G40620.1); Has 1198 Blast hits to 1198 proteins in 152 species: Archae - 0; Bacteria - 20; Metazoa - 228; Fungi - 109; Plants - 784; Viruses - 2; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT1G06850.1p  transcript_id AT1G06850.1  protein_id AT1G06850.1p  transcript_id AT1G06850.1  
At1g06860	chr1:002107398	0.0	C/2107398-2107468	AT1G06860.1  tRNA  gene_syn 52131.TRNA-GLY-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: GCC)  transcript_id AT1G06860.1  
At1g06870	chr1:002108832	0.0	W/2108832-2109518,2109763-2109831,2109918-2109986,2110170-2110256,2110358-2110425,2110519-2110642	AT1G06870.1  CDS  gene_syn F4H5.6, F4H5_6  go_component membrane|GO:0016020||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type peptidase activity|GO:0008236||IEA  go_component membrane|GO:0016020||ISS  go_process proteolysis|GO:0006508||ISS  go_function peptidase activity|GO:0008233||ISS  product signal peptidase, putative  note signal peptidase, putative; FUNCTIONS IN: serine-type peptidase activity, peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Peptidase S24, S26A and S26B, C-terminal (InterPro:IPR011056), Peptidase S24, S26A, S26B and S26C (InterPro:IPR015927), Peptidase S26A, signal peptidase I (InterPro:IPR000223), Peptidase S26A (InterPro:IPR014037); BEST Arabidopsis thaliana protein match is: chloroplast thylakoidal processing peptidase (TAIR:AT2G30440.1); Has 5736 Blast hits to 5607 proteins in 1273 species: Archae - 0; Bacteria - 3551; Metazoa - 182; Fungi - 62; Plants - 118; Viruses - 0; Other Eukaryotes - 1823 (source: NCBI BLink).  protein_id AT1G06870.1p  transcript_id AT1G06870.1  protein_id AT1G06870.1p  transcript_id AT1G06870.1  
At1g06880	chr1:002111148	0.0	C/2111148-2111218	AT1G06880.1  tRNA  gene_syn 52131.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: GCC)  transcript_id AT1G06880.1  
At1g06890	chr1:002113918	0.0	C/2113918-2114038,2113237-2113421,2113071-2113138,2112706-2112838,2112438-2112599,2112064-2112336,2111728-2111859	AT1G06890.1  CDS  gene_syn F4H5.5, F4H5_5  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component membrane|GO:0016020|11152613|ISS  product transporter-related  note transporter-related; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30460.2); Has 1730 Blast hits to 1725 proteins in 204 species: Archae - 2; Bacteria - 41; Metazoa - 571; Fungi - 289; Plants - 633; Viruses - 0; Other Eukaryotes - 194 (source: NCBI BLink).  protein_id AT1G06890.1p  transcript_id AT1G06890.1  protein_id AT1G06890.1p  transcript_id AT1G06890.1  
At1g06890	chr1:002113918	0.0	C/2113918-2114038,2113237-2113421,2113071-2113138,2112706-2112838,2112438-2112599,2112064-2112336,2111728-2111859	AT1G06890.2  CDS  gene_syn F4H5.5, F4H5_5  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component membrane|GO:0016020|11152613|ISS  product transporter-related  note transporter-related; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30460.2); Has 1730 Blast hits to 1725 proteins in 204 species: Archae - 2; Bacteria - 41; Metazoa - 571; Fungi - 289; Plants - 633; Viruses - 0; Other Eukaryotes - 194 (source: NCBI BLink).  protein_id AT1G06890.2p  transcript_id AT1G06890.2  protein_id AT1G06890.2p  transcript_id AT1G06890.2  
At1g06900	chr1:002120318	0.0	C/2120318-2120635,2120156-2120231,2120011-2120057,2119666-2119778,2119284-2119357,2119055-2119150,2118846-2118965,2118485-2118718,2118235-2118383,2117822-2117978,2117517-2117666,2117051-2117430,2116824-2116973,2116512-2116694,2116193-2116396,2115974-2116077,2115730-2115883,2115521-2115642,2115155-2115398	AT1G06900.1  CDS  gene_syn F4H5.4, F4H5_4  go_process proteolysis|GO:0006508||IEA  go_function catalytic activity|GO:0003824||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_process proteolysis|GO:0006508||ISS  go_function metalloendopeptidase activity|GO:0004222||ISS  product catalytic/ metal ion binding / metalloendopeptidase/ zinc ion binding  note catalytic/ metal ion binding / metalloendopeptidase/ zinc ion binding; FUNCTIONS IN: metalloendopeptidase activity, catalytic activity, zinc ion binding, metal ion binding; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M16, zinc-binding site (InterPro:IPR001431), Peptidase M16, C-terminal (InterPro:IPR007863), Peptidase M16, N-terminal (InterPro:IPR011765), Metalloenzyme, LuxS/M16 peptidase-like, metal-binding (InterPro:IPR011249), Peptidase M16, core (InterPro:IPR011237); BEST Arabidopsis thaliana protein match is: peptidase M16 family protein / insulinase family protein (TAIR:AT2G41790.1); Has 36095 Blast hits to 16198 proteins in 1364 species: Archae - 66; Bacteria - 4521; Metazoa - 14084; Fungi - 4071; Plants - 1728; Viruses - 678; Other Eukaryotes - 10947 (source: NCBI BLink).  protein_id AT1G06900.1p  transcript_id AT1G06900.1  protein_id AT1G06900.1p  transcript_id AT1G06900.1  
At1g06910	chr1:002121099	0.0	W/2121099-2121681,2121788-2122074,2122437-2122621,2122708-2122768,2122858-2122914	AT1G06910.1  CDS  gene_syn TRF-LIKE 7, TRFL7  gene TRFL7  function Arabidopsis thaliana myb family transcription factor (At1g06910)  go_function DNA binding|GO:0003677||IEA  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product TRFL7 (TRF-LIKE 7); DNA binding / transcription factor  note TRF-LIKE 7 (TRFL7); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to jasmonic acid stimulus, response to salicylic acid stimulus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRFL5 (TRF-LIKE 5); DNA binding / transcription factor (TAIR:AT1G15720.1); Has 47 Blast hits to 47 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 6; Plants - 31; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G06910.1p  transcript_id AT1G06910.1  protein_id AT1G06910.1p  transcript_id AT1G06910.1  
At1g06920	chr1:002124854	0.0	C/2124854-2125801	AT1G06920.1  CDS  gene_syn ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ATOFP4, F4H5.2, F4H5_2, OFP4  gene OFP4  go_process biological_process|GO:0008150||ND  product OFP4 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4)  note ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4 (OFP4); INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623, plant (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: OFP2 (OVATE FAMILY PROTEIN 2) (TAIR:AT2G30400.1); Has 298 Blast hits to 288 proteins in 42 species: Archae - 0; Bacteria - 6; Metazoa - 49; Fungi - 2; Plants - 206; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT1G06920.1p  transcript_id AT1G06920.1  protein_id AT1G06920.1p  transcript_id AT1G06920.1  
At1g06923	chr1:002126802	0.0	W/2126802-2127000,2127085-2127398	AT1G06923.1  CDS  product unknown protein  note BEST Arabidopsis thaliana protein match is: OFP17 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 17) (TAIR:AT2G30395.1); Has 18 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G06923.1p  transcript_id AT1G06923.1  protein_id AT1G06923.1p  transcript_id AT1G06923.1  
At1g06925	chr1:002128580	0.0	C/2128580-2128611,2128151-2128216,2127704-2128037	AT1G06925.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G20480.1); Has 47 Blast hits to 45 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G06925.1p  transcript_id AT1G06925.1  protein_id AT1G06925.1p  transcript_id AT1G06925.1  
At1g06930	chr1:002129163	0.0	W/2129163-2129672	AT1G06930.1  CDS  gene_syn F4H5.24, F4H5_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 4901 Blast hits to 288 proteins in 66 species: Archae - 0; Bacteria - 24; Metazoa - 749; Fungi - 106; Plants - 54; Viruses - 24; Other Eukaryotes - 3944 (source: NCBI BLink).  protein_id AT1G06930.1p  transcript_id AT1G06930.1  protein_id AT1G06930.1p  transcript_id AT1G06930.1  
At1g06950	chr1:002135040	0.0	C/2135040-2135563,2134897-2134956,2134688-2134811,2134513-2134581,2134320-2134418,2134124-2134190,2133741-2133805,2133569-2133663,2133011-2133138,2132837-2132937,2132479-2132695,2132018-2132172,2131738-2131863,2130660-2131631,2130303-2130551	AT1G06950.1  CDS  gene_syn ARABIDOPSIS THALIANA TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110, ATTIC110, TIC110, TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110  gene TIC110  function Encodes a protein thought to be a part of the translocon at the chloroplast inner envelope. Involved in protein import into the chloroplast and chloroplast biogenesis.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component chloroplast|GO:0009507|15659100|IDA  go_component Tic complex|GO:0031897|15659100|TAS  go_process chloroplast organization|GO:0009658|15659100|IMP  go_process protein import into chloroplast stroma|GO:0045037|15659100|IMP  product TIC110 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110)  note TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110 (TIC110); INVOLVED IN: protein import into chloroplast stroma, chloroplast organization; LOCATED IN: chloroplast, membrane, chloroplast envelope, Tic complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 98 Blast hits to 90 proteins in 42 species: Archae - 2; Bacteria - 6; Metazoa - 17; Fungi - 9; Plants - 40; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT1G06950.1p  transcript_id AT1G06950.1  protein_id AT1G06950.1p  transcript_id AT1G06950.1  
At1g06960	chr1:002135930	0.0	W/2135930-2136002,2136415-2136587,2136871-2136964,2137067-2137143,2137264-2137533	AT1G06960.2  CDS  gene_syn F10K1.32, F10K1_32  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||ISS  product small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative  note small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: U2B   (U2 small nuclear ribonucleoprotein B); RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT2G30260.1); Has 1184 Blast hits to 1174 proteins in 179 species: Archae - 0; Bacteria - 2; Metazoa - 646; Fungi - 257; Plants - 127; Viruses - 1; Other Eukaryotes - 151 (source: NCBI BLink).  protein_id AT1G06960.2p  transcript_id AT1G06960.2  protein_id AT1G06960.2p  transcript_id AT1G06960.2  
At1g06960	chr1:002135930	0.0	W/2135930-2136002,2136415-2136587,2136871-2136964,2137067-2137146,2137264-2137533	AT1G06960.1  CDS  gene_syn F10K1.32, F10K1_32  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||ISS  product small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative  note small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: U2B   (U2 small nuclear ribonucleoprotein B); RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT2G30260.1); Has 1187 Blast hits to 1180 proteins in 179 species: Archae - 0; Bacteria - 2; Metazoa - 655; Fungi - 246; Plants - 133; Viruses - 1; Other Eukaryotes - 150 (source: NCBI BLink).  protein_id AT1G06960.1p  transcript_id AT1G06960.1  protein_id AT1G06960.1p  transcript_id AT1G06960.1  
At1g06960	chr1:002135982	0.0	W/2135982-2136002,2136450-2136587,2136871-2136964,2137067-2137146,2137264-2137533	AT1G06960.3  CDS  gene_syn F10K1.32, F10K1_32  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||ISS  product small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative  note small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: U2B   (U2 small nuclear ribonucleoprotein B); RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT2G30260.1); Has 739 Blast hits to 734 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 343; Fungi - 201; Plants - 88; Viruses - 1; Other Eukaryotes - 106 (source: NCBI BLink).  protein_id AT1G06960.3p  transcript_id AT1G06960.3  protein_id AT1G06960.3p  transcript_id AT1G06960.3  
At1g06970	chr1:002138109	0.0	W/2138109-2138360,2138485-2139480,2139577-2140818	AT1G06970.1  CDS  gene_syn ATCHX14, CATION/HYDROGEN EXCHANGER 14, CHX14, F10K1.31, F10K1_31  gene CHX14  function member of Putative Na+/H+ antiporter family  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|IC  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product CHX14 (CATION/HYDROGEN EXCHANGER 14); monovalent cation:proton antiporter/ sodium:hydrogen antiporter  note CATION/HYDROGEN EXCHANGER 14 (CHX14); FUNCTIONS IN: monovalent cation:proton antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: ATCHX13; monovalent cation:proton antiporter/ potassium ion transmembrane transporter/ sodium:hydrogen antiporter (TAIR:AT2G30240.1); Has 2501 Blast hits to 2486 proteins in 688 species: Archae - 141; Bacteria - 1675; Metazoa - 0; Fungi - 80; Plants - 246; Viruses - 0; Other Eukaryotes - 359 (source: NCBI BLink).  protein_id AT1G06970.1p  transcript_id AT1G06970.1  protein_id AT1G06970.1p  transcript_id AT1G06970.1  
At1g06980	chr1:002143248	0.0	C/2143248-2143757	AT1G06980.1  CDS  gene_syn F10K1.30, F10K1_30  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, sepal, carpel; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1); Has 90 Blast hits to 90 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G06980.1p  transcript_id AT1G06980.1  protein_id AT1G06980.1p  transcript_id AT1G06980.1  
At1g06990	chr1:002148393	0.0	W/2148393-2149022,2149150-2149411,2149819-2150009	AT1G06990.1  CDS  gene_syn F10K1.29, F10K1_29  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: RXF26; carboxylesterase/ hydrolase, acting on ester bonds (TAIR:AT1G58430.1); Has 1862 Blast hits to 1840 proteins in 163 species: Archae - 0; Bacteria - 233; Metazoa - 1; Fungi - 18; Plants - 1587; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G06990.1p  transcript_id AT1G06990.1  protein_id AT1G06990.1p  transcript_id AT1G06990.1  
At1g07000	chr1:002151814	0.0	C/2151814-2152305,2150398-2151705	AT1G07000.1  CDS  gene_syn ATEXO70B2, F10K1.28, F10K1_28, exocyst subunit EXO70 family protein B2  gene ATEXO70B2  function A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.  go_component plasma membrane|GO:0005886|17644812|IDA  go_process exocytosis|GO:0006887||IEA  go_component exocyst|GO:0000145||ISS  go_process vesicle docking during exocytosis|GO:0006904||ISS  go_function protein binding|GO:0005515||ISS  product ATEXO70B2 (exocyst subunit EXO70 family protein B2); protein binding  note exocyst subunit EXO70 family protein B2 (ATEXO70B2); FUNCTIONS IN: protein binding; INVOLVED IN: exocytosis, vesicle docking during exocytosis; LOCATED IN: plasma membrane, exocyst; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: ATEXO70B1 (exocyst subunit EXO70 family protein B1); protein binding (TAIR:AT5G58430.1); Has 492 Blast hits to 490 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 107; Fungi - 8; Plants - 374; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G07000.1p  transcript_id AT1G07000.1  protein_id AT1G07000.1p  transcript_id AT1G07000.1  
At1g07010	chr1:002152949	0.0	W/2152949-2153132,2153196-2153308,2153391-2153423,2153504-2153605,2153750-2153962,2154052-2154187,2154274-2154449,2154547-2154635,2154719-2154788,2154882-2154968	AT1G07010.3  CDS  gene_syn F10K1.27, F10K1_27  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product calcineurin-like phosphoesterase family protein  note calcineurin-like phosphoesterase family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: calcineurin-like phosphoesterase family protein (TAIR:AT1G18480.1).  protein_id AT1G07010.3p  transcript_id AT1G07010.3  protein_id AT1G07010.3p  transcript_id AT1G07010.3  
At1g07010	chr1:002152949	0.0	W/2152949-2153132,2153223-2153323,2153492-2153605,2153750-2153962,2154052-2154187,2154274-2154449,2154547-2154635,2154719-2154788,2154882-2154968	AT1G07010.1  CDS  gene_syn F10K1.27, F10K1_27  go_component peroxisome|GO:0005777|12154131|IDA  go_function hydrolase activity|GO:0016787||IEA  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product calcineurin-like phosphoesterase family protein  note calcineurin-like phosphoesterase family protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: peroxisome; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: calcineurin-like phosphoesterase family protein (TAIR:AT1G18480.1); Has 499 Blast hits to 499 proteins in 144 species: Archae - 6; Bacteria - 198; Metazoa - 0; Fungi - 24; Plants - 54; Viruses - 3; Other Eukaryotes - 214 (source: NCBI BLink).  protein_id AT1G07010.1p  transcript_id AT1G07010.1  protein_id AT1G07010.1p  transcript_id AT1G07010.1  
At1g07010	chr1:002152949	0.0	W/2152949-2153132,2153223-2153323,2153504-2153605,2153750-2153962,2154052-2154187,2154274-2154449,2154547-2154635,2154719-2154788,2154882-2154968	AT1G07010.2  CDS  gene_syn F10K1.27, F10K1_27  go_function hydrolase activity|GO:0016787||IEA  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product calcineurin-like phosphoesterase family protein  note calcineurin-like phosphoesterase family protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: calcineurin-like phosphoesterase family protein (TAIR:AT1G18480.1); Has 40 Blast hits to 40 proteins in 18 species: Archae - 0; Bacteria - 29; Metazoa - 0; Fungi - 6; Plants - 0; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G07010.2p  transcript_id AT1G07010.2  protein_id AT1G07010.2p  transcript_id AT1G07010.2  
At1g07020	chr1:002155878	0.0	C/2155878-2155884,2155319-2155755	AT1G07020.1  CDS  gene_syn F10K1.34, F10K1_34  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; Has 22 Blast hits to 22 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 3; Plants - 11; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G07020.1p  transcript_id AT1G07020.1  protein_id AT1G07020.1p  transcript_id AT1G07020.1  
At1g07025	chr1:002157658	0.0	C/2157658-2158158	AT1G07025.1  CDS  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function binding|GO:0005488||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrial inner membrane, membrane; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: mitochondrial substrate carrier family protein (TAIR:AT2G30160.1); Has 1941 Blast hits to 1765 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 1290; Fungi - 314; Plants - 227; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT1G07025.1p  transcript_id AT1G07025.1  protein_id AT1G07025.1p  transcript_id AT1G07025.1  
At1g07030	chr1:002159751	0.0	C/2159751-2160524,2158631-2158837	AT1G07030.1  CDS  gene_syn F10K1.26, F10K1_26  go_component mitochondrial inner membrane|GO:0005743||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function binding|GO:0005488||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: mitochondrial substrate carrier family protein (TAIR:AT2G30160.1); Has 19774 Blast hits to 10070 proteins in 353 species: Archae - 0; Bacteria - 0; Metazoa - 9836; Fungi - 5154; Plants - 2928; Viruses - 0; Other Eukaryotes - 1856 (source: NCBI BLink).  protein_id AT1G07030.1p  transcript_id AT1G07030.1  protein_id AT1G07030.1p  transcript_id AT1G07030.1  
At1g07040	chr1:002162829	0.0	C/2162829-2163035,2162477-2162629,2162171-2162386,2161975-2162096,2161722-2161885,2161490-2161644,2161225-2161323	AT1G07040.1  CDS  gene_syn F10K1.25, F10K1_25  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27030.1); Has 403 Blast hits to 403 proteins in 131 species: Archae - 0; Bacteria - 232; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink).  protein_id AT1G07040.1p  transcript_id AT1G07040.1  protein_id AT1G07040.1p  transcript_id AT1G07040.1  
At1g07050	chr1:002164726	0.0	C/2164726-2165133,2164482-2164634,2164327-2164353	AT1G07050.1  CDS  gene_syn F10K1.24, F10K1_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product CONSTANS-like protein-related  note CONSTANS-like protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CIL (TAIR:AT4G25990.1); Has 984 Blast hits to 984 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 943; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT1G07050.1p  transcript_id AT1G07050.1  protein_id AT1G07050.1p  transcript_id AT1G07050.1  
At1g07051	chr1:002165517	0.0	W/2165517-2165746	AT1G07051.1  miRNA  gene_syn MICRORNA847A, MIR847A  gene MIR847A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCACUCCUCUUCUUCUUGAUG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR847A (MICRORNA847A); miRNA  transcript_id AT1G07051.1  
At1g07060	chr1:002168258	0.0	C/2168258-2168397,2167965-2168172,2167671-2167814,2167138-2167347	AT1G07060.1  CDS  gene_syn F10K1.23, F10K1_23  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; Has 12 Blast hits to 12 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G07060.1p  transcript_id AT1G07060.1  protein_id AT1G07060.1p  transcript_id AT1G07060.1  
At1g07070	chr1:002168652	0.0	W/2168652-2168683,2168909-2168944,2169341-2169569,2169662-2169703	AT1G07070.1  CDS  gene_syn F10K1.22, F10K1_22  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L35a (RPL35aA)  note 60S ribosomal protein L35a (RPL35aA); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, ribosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L35Ae (InterPro:IPR001780), Ribosomal protein L35Ae, conserved site (InterPro:IPR018266); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L35a (RPL35aC) (TAIR:AT1G74270.1); Has 541 Blast hits to 541 proteins in 186 species: Archae - 21; Bacteria - 0; Metazoa - 228; Fungi - 97; Plants - 93; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).  protein_id AT1G07070.1p  transcript_id AT1G07070.1  protein_id AT1G07070.1p  transcript_id AT1G07070.1  
At1g07080	chr1:002170069	0.0	W/2170069-2170350,2170524-2170589,2170702-2170842,2171065-2171157,2171646-2171861	AT1G07080.1  CDS  gene_syn F10K1.21, F10K1_21  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein  note gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Gamma interferon inducible lysosomal thiol reductase GILT (InterPro:IPR004911), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: OSH1 (OAS HIGH ACCUMULATION 1); catalytic (TAIR:AT5G01580.1); Has 339 Blast hits to 336 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 260; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT1G07080.1p  transcript_id AT1G07080.1  protein_id AT1G07080.1p  transcript_id AT1G07080.1  
At1g07090	chr1:002174202	0.0	C/2174202-2174792	AT1G07090.1  CDS  gene_syn F10K1.20, F10K1_20, LIGHT SENSITIVE HYPOCOTYLS 6, LSH6  gene LSH6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product LSH6 (LIGHT SENSITIVE HYPOCOTYLS 6)  note LIGHT SENSITIVE HYPOCOTYLS 6 (LSH6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: LSH5 (LIGHT SENSITIVE HYPOCOTYLS 5) (TAIR:AT5G58500.1); Has 185 Blast hits to 185 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G07090.1p  transcript_id AT1G07090.1  protein_id AT1G07090.1p  transcript_id AT1G07090.1  
At1g07100	chr1:002177885	0.0	W/2177885-2177958	AT1G07100.1  tRNA  gene_syn 61269.TRNA-ILE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ile (anticodon: TAT)  transcript_id AT1G07100.1  
At1g07110	chr1:002183810	0.0	C/2183810-2183980,2183630-2183693,2183217-2183509,2182811-2183026,2182516-2182716,2182325-2182420,2182038-2182136,2181903-2181932,2181761-2181814,2181529-2181582,2181379-2181456,2181086-2181177,2180954-2181011,2180751-2180825,2180577-2180624,2180254-2180351,2179942-2180017,2179293-2179355,2179108-2179199,2178915-2178983,2178771-2178834,2178555-2178620,2178363-2178440	AT1G07110.1  CDS  gene_syn ATF2KP, F10K1.19, F10K1_19, F2KP, FKFBP, FRUCTOSE-2,6-BISPHOSPHATASE, FRUCTOSE-6-PHOSPHATE 2-KINASE  gene F2KP  function Encodes the bifunctional enzyme fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process fructose metabolic process|GO:0006000|10899575|IMP  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function fructose-2,6-bisphosphate 2-phosphatase activity|GO:0004331|10899575|IMP  product F2KP (FRUCTOSE-2,6-BISPHOSPHATASE); fructose-2,6-bisphosphate 2-phosphatase  note FRUCTOSE-2,6-BISPHOSPHATASE (F2KP); FUNCTIONS IN: fructose-2,6-bisphosphate 2-phosphatase activity; INVOLVED IN: N-terminal protein myristoylation, fructose metabolic process; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional 6-phosphofructo-2-kinase/fructose-2, 6-bisphosphate 2-phosphatase (InterPro:IPR016260), Phosphoglycerate/bisphosphoglycerate mutase (InterPro:IPR001345), Fructose-2,6-bisphosphatase (InterPro:IPR003094), Carbohydrate-binding-like fold (InterPro:IPR013784), Glycoside hydrolase, carbohydrate-binding (InterPro:IPR002044), Phosphoglycerate mutase (InterPro:IPR013078), 6-phosphofructo-2-kinase (InterPro:IPR013079); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G30200.1); Has 2917 Blast hits to 2813 proteins in 669 species: Archae - 2; Bacteria - 1510; Metazoa - 464; Fungi - 342; Plants - 79; Viruses - 0; Other Eukaryotes - 520 (source: NCBI BLink).  protein_id AT1G07110.1p  transcript_id AT1G07110.1  protein_id AT1G07110.1p  transcript_id AT1G07110.1  
At1g07119	chr1:002184347	0.0	W/2184347-2186539	AT1G07119.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G07120  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G07119.1  
At1g07120	chr1:002186044	0.0	C/2186044-2186580,2185600-2185916,2185399-2185510,2185034-2185165,2184874-2184954	AT1G07120.1  CDS  gene_syn F10K1.18, F10K1_18  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: leaf whorl, petal, inflorescence meristem, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT4G18570.1); Has 197 Blast hits to 171 proteins in 40 species: Archae - 0; Bacteria - 8; Metazoa - 25; Fungi - 11; Plants - 78; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT1G07120.1p  transcript_id AT1G07120.1  protein_id AT1G07120.1p  transcript_id AT1G07120.1  
At1g07130	chr1:002187928	0.0	W/2187928-2188410	AT1G07130.1  CDS  gene_syn ATSTN1, F10K1.17, F10K1_17, STN1  gene STN1  function Encodes a protein with similarity to yeast STN1, an OB fold protein involved in protecting yeast telomeres. In Arabidopsis, loss of STN1 function mutations exhibit gross morphological abnormalities and defects in telomere architecture and maintenance. STN1 likely plays a role in telomere end capping.  go_function nucleic acid binding|GO:0003676||IEA  go_component nuclear chromosome, telomeric region|GO:0000784|19064932|IDA  go_process telomere capping|GO:0016233|19064932|IMP  product STN1; nucleic acid binding  note STN1; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: telomere capping; LOCATED IN: nuclear chromosome, telomeric region; EXPRESSED IN: root, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365); Has 73 Blast hits to 73 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 43; Fungi - 2; Plants - 24; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G07130.1p  transcript_id AT1G07130.1  protein_id AT1G07130.1p  transcript_id AT1G07130.1  
At1g07135	chr1:002190157	0.0	C/2190157-2190624	AT1G07135.1  CDS  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; Has 21223 Blast hits to 7917 proteins in 705 species: Archae - 21; Bacteria - 6537; Metazoa - 6020; Fungi - 1304; Plants - 4042; Viruses - 441; Other Eukaryotes - 2858 (source: NCBI BLink).  protein_id AT1G07135.1p  transcript_id AT1G07135.1  protein_id AT1G07135.1p  transcript_id AT1G07135.1  
At1g07140	chr1:002193534	0.0	C/2193534-2193688,2193262-2193413,2193030-2193155,2192360-2192613	AT1G07140.1  CDS  gene_syn F10K1.15, F10K1_15, RAN-BINDING PROTEIN SIRANBP, SIRANBP  gene SIRANBP  function Encodes a putative Ran-binding protein (siRanBP).  go_process intracellular transport|GO:0046907||IEA  go_component cellular_component|GO:0005575||ND  go_process protein import into nucleus, translocation|GO:0000060||ISS  go_function Ran GTPase binding|GO:0008536||ISS  product SIRANBP; Ran GTPase binding  note SIRANBP; FUNCTIONS IN: Ran GTPase binding; INVOLVED IN: intracellular transport, protein import into nucleus, translocation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ran Binding Protein 1 (InterPro:IPR000156), Pleckstrin homology-type (InterPro:IPR011993); BEST Arabidopsis thaliana protein match is: RANBP1 (RAN BINDING PROTEIN 1); protein binding (TAIR:AT5G58590.1); Has 1930 Blast hits to 1371 proteins in 204 species: Archae - 9; Bacteria - 58; Metazoa - 1032; Fungi - 252; Plants - 104; Viruses - 39; Other Eukaryotes - 436 (source: NCBI BLink).  protein_id AT1G07140.1p  transcript_id AT1G07140.1  protein_id AT1G07140.1p  transcript_id AT1G07140.1  
At1g07150	chr1:002194279	0.0	C/2194279-2195778	AT1G07150.1  CDS  gene_syn F10K1.14, F10K1_14, MAPKKK13, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 13  gene MAPKKK13  function member of MEKK subfamily  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product MAPKKK13; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note MAPKKK13; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: MAPKKK14; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT2G30040.1); Has 84383 Blast hits to 83396 proteins in 2283 species: Archae - 76; Bacteria - 6495; Metazoa - 37674; Fungi - 7802; Plants - 16234; Viruses - 536; Other Eukaryotes - 15566 (source: NCBI BLink).  protein_id AT1G07150.1p  transcript_id AT1G07150.1  protein_id AT1G07150.1p  transcript_id AT1G07150.1  
At1g07160	chr1:002199226	0.0	C/2199226-2199678,2198575-2198919,2198155-2198499	AT1G07160.1  CDS  gene_syn F10K1.13, F10K1_13  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: chloroplast, protein serine/threonine phosphatase complex; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT2G30020.1); Has 4757 Blast hits to 4614 proteins in 388 species: Archae - 6; Bacteria - 337; Metazoa - 1505; Fungi - 554; Plants - 1322; Viruses - 11; Other Eukaryotes - 1022 (source: NCBI BLink).  protein_id AT1G07160.1p  transcript_id AT1G07160.1  protein_id AT1G07160.1p  transcript_id AT1G07160.1  
At1g07170	chr1:002200686	0.0	W/2200686-2201018	AT1G07170.1  CDS  gene_syn F10K1.35  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PHF5-like (InterPro:IPR005345); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30000.1); Has 292 Blast hits to 292 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 75; Plants - 47; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT1G07170.1p  transcript_id AT1G07170.1  protein_id AT1G07170.1p  transcript_id AT1G07170.1  
At1g07170	chr1:002200686	0.0	W/2200686-2201018	AT1G07170.2  CDS  gene_syn F10K1.35  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PHF5-like (InterPro:IPR005345); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30000.1); Has 292 Blast hits to 292 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 75; Plants - 47; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT1G07170.2p  transcript_id AT1G07170.2  protein_id AT1G07170.2p  transcript_id AT1G07170.2  
At1g07175	chr1:002202382	0.0	W/2202382-2202472,2202650-2202774	AT1G07175.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29995.1); Has 10 Blast hits to 10 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G07175.1p  transcript_id AT1G07175.1  protein_id AT1G07175.1p  transcript_id AT1G07175.1  
At1g07180	chr1:002204414	0.0	W/2204414-2204893,2205179-2205392,2205483-2205643,2205734-2205799,2205886-2206049,2206143-2206257,2206339-2206518,2206621-2206773	AT1G07180.1  CDS  gene_syn ALTERNATIVE NAD(P)H DEHYDROGENASE 1, ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD ( P ) H DEHYDROGENASE, ATNDI1, F10K1.11, F10K1_11, NADH-DEHYDROGENASE, NDA1  gene NDA1  function Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms; the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway is significantly reduced in the Atndi1 mutant plant line; the in vitro translation product of AtNDI1 is imported into isolated mitochondria and located on the inside of the inner membrane.  go_component mitochondrion|GO:0005739|14630960|IDA  go_component intrinsic to mitochondrial inner membrane|GO:0031304|16258072|IDA  go_function NADH dehydrogenase activity|GO:0003954|14630960|IMP  go_function NADH dehydrogenase activity|GO:0003954||ISS  product NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1); NADH dehydrogenase  note ALTERNATIVE NAD(P)H DEHYDROGENASE 1 (NDA1); FUNCTIONS IN: NADH dehydrogenase activity; LOCATED IN: intrinsic to mitochondrial inner membrane, mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2); FAD binding / NADH dehydrogenase/ oxidoreductase (TAIR:AT2G29990.1); Has 5387 Blast hits to 5274 proteins in 1175 species: Archae - 120; Bacteria - 3733; Metazoa - 55; Fungi - 391; Plants - 199; Viruses - 0; Other Eukaryotes - 889 (source: NCBI BLink).  protein_id AT1G07180.1p  transcript_id AT1G07180.1  protein_id AT1G07180.1p  transcript_id AT1G07180.1  
At1g07190	chr1:002208013	0.0	W/2208013-2208177	AT1G07190.1  CDS  gene_syn F10K1.10, F10K1_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: LON1 (LON PROTEASE 1); ATP binding / ATP-dependent peptidase/ serine-type peptidase (TAIR:AT5G26860.1); Has 53 Blast hits to 53 proteins in 18 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 8; Plants - 31; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G07190.1p  transcript_id AT1G07190.1  protein_id AT1G07190.1p  transcript_id AT1G07190.1  
At1g07200	chr1:002209033	0.0	C/2209033-2210301	AT1G07200.1  CDS  gene_syn F10K1.9, F10K1_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ATP binding|GO:0005524||ISS  product ATP-dependent Clp protease ClpB protein-related  note ATP-dependent Clp protease ClpB protein-related; FUNCTIONS IN: ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: heat shock protein-related (TAIR:AT2G29970.1); Has 8595 Blast hits to 8595 proteins in 1496 species: Archae - 9; Bacteria - 6147; Metazoa - 69; Fungi - 173; Plants - 245; Viruses - 0; Other Eukaryotes - 1952 (source: NCBI BLink).  protein_id AT1G07200.1p  transcript_id AT1G07200.1  protein_id AT1G07200.1p  transcript_id AT1G07200.1  
At1g07200	chr1:002211121	0.0	C/2211121-2212316,2210607-2210859,2209033-2210523	AT1G07200.2  CDS  gene_syn F10K1.9, F10K1_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ATP binding|GO:0005524||ISS  product ATP-dependent Clp protease ClpB protein-related  note ATP-dependent Clp protease ClpB protein-related; FUNCTIONS IN: ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: heat shock protein-related (TAIR:AT2G29970.1); Has 8745 Blast hits to 8618 proteins in 1498 species: Archae - 9; Bacteria - 6193; Metazoa - 69; Fungi - 201; Plants - 318; Viruses - 0; Other Eukaryotes - 1955 (source: NCBI BLink).  protein_id AT1G07200.2p  transcript_id AT1G07200.2  protein_id AT1G07200.2p  transcript_id AT1G07200.2  
At1g07210	chr1:002215320	0.0	W/2215320-2215422,2215513-2215856,2216155-2216241,2216327-2216386,2216477-2216668	AT1G07210.1  CDS  gene_syn F10K1.8, F10K1_8  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 30S ribosomal protein S18 family  note 30S ribosomal protein S18 family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S18 (InterPro:IPR001648); Has 3606 Blast hits to 3606 proteins in 1189 species: Archae - 0; Bacteria - 2426; Metazoa - 33; Fungi - 15; Plants - 158; Viruses - 0; Other Eukaryotes - 974 (source: NCBI BLink).  protein_id AT1G07210.1p  transcript_id AT1G07210.1  protein_id AT1G07210.1p  transcript_id AT1G07210.1  
At1g07220	chr1:002219260	0.0	C/2219260-2219379,2218669-2218907,2218202-2218552,2217936-2218125,2217795-2217859,2217499-2217709,2217073-2217420	AT1G07220.1  CDS  gene_syn F10K1.7, F10K1_7  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro:IPR008539); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23850.1); Has 456 Blast hits to 452 proteins in 94 species: Archae - 0; Bacteria - 34; Metazoa - 198; Fungi - 90; Plants - 113; Viruses - 2; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT1G07220.1p  transcript_id AT1G07220.1  protein_id AT1G07220.1p  transcript_id AT1G07220.1  
At1g07230	chr1:002221680	0.0	C/2221680-2222778,2221206-2221382,2220509-2220834	AT1G07230.1  CDS  gene_syn F10K1.6, F10K1_6  go_component endomembrane system|GO:0012505||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||ISS  product hydrolase, acting on ester bonds  note hydrolase, acting on ester bonds; FUNCTIONS IN: hydrolase activity, acting on ester bonds; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoesterase (InterPro:IPR007312); BEST Arabidopsis thaliana protein match is: phosphoesterase family protein (TAIR:AT2G26870.1); Has 1409 Blast hits to 1383 proteins in 225 species: Archae - 10; Bacteria - 1165; Metazoa - 0; Fungi - 100; Plants - 90; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT1G07230.1p  transcript_id AT1G07230.1  protein_id AT1G07230.1p  transcript_id AT1G07230.1  
At1g07240	chr1:002223889	0.0	W/2223889-2225331	AT1G07240.1  CDS  gene_syn F10K1.5, F10K1_5, UDP-GLUCOSYL TRANSFERASE 71C5, UGT71C5  gene UGT71C5  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function quercetin 3-O-glucosyltransferase activity|GO:0080043|15352060|IDA  product UGT71C5 (UDP-GLUCOSYL TRANSFERASE 71C5); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring glycosyl groups  note UDP-GLUCOSYL TRANSFERASE 71C5 (UGT71C5); FUNCTIONS IN: quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT71C4 (UDP-GLUCOSYL TRANSFERASE 71C4); quercetin 3-O-glucosyltransferase/ quercetin 7-O-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT1G07250.1); Has 4789 Blast hits to 4760 proteins in 276 species: Archae - 0; Bacteria - 131; Metazoa - 1995; Fungi - 11; Plants - 2611; Viruses - 12; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G07240.1p  transcript_id AT1G07240.1  protein_id AT1G07240.1p  transcript_id AT1G07240.1  
At1g07250	chr1:002225963	0.0	W/2225963-2227402	AT1G07250.1  CDS  gene_syn F10K1.4, F10K1_4, UDP-GLUCOSYL TRANSFERASE 71C4, UGT71C4  gene UGT71C4  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function quercetin 3-O-glucosyltransferase activity|GO:0080043|15352060|IDA  go_function quercetin 7-O-glucosyltransferase activity|GO:0080044|15352060|IDA  product UGT71C4 (UDP-GLUCOSYL TRANSFERASE 71C4); quercetin 3-O-glucosyltransferase/ quercetin 7-O-glucosyltransferase/ transferase, transferring glycosyl groups  note UDP-GLUCOSYL TRANSFERASE 71C4 (UGT71C4); FUNCTIONS IN: quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT71C3 (UDP-GLUCOSYL TRANSFERASE 71C3); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT1G07260.1); Has 4707 Blast hits to 4690 proteins in 296 species: Archae - 0; Bacteria - 123; Metazoa - 1851; Fungi - 11; Plants - 2658; Viruses - 37; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT1G07250.1p  transcript_id AT1G07250.1  protein_id AT1G07250.1p  transcript_id AT1G07250.1  
At1g07260	chr1:002227748	0.0	C/2227748-2229178	AT1G07260.1  CDS  gene_syn F10K1.3, F10K1_3, UDP-GLUCOSYL TRANSFERASE 71C3, UGT71C3  gene UGT71C3  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function quercetin 3-O-glucosyltransferase activity|GO:0080043|15352060|IDA  product UGT71C3 (UDP-GLUCOSYL TRANSFERASE 71C3); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring glycosyl groups  note UDP-GLUCOSYL TRANSFERASE 71C3 (UGT71C3); FUNCTIONS IN: quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT71C2 (UDP-GLUCOSYL TRANSFERASE 71C2); UDP-glycosyltransferase/ quercetin 3 -O-glucosyltransferase/ quercetin 3-O-glucosyltransferase/ quercetin 7-O-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT2G29740.1); Has 4810 Blast hits to 4788 proteins in 302 species: Archae - 0; Bacteria - 150; Metazoa - 1930; Fungi - 10; Plants - 2650; Viruses - 42; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT1G07260.1p  transcript_id AT1G07260.1  protein_id AT1G07260.1p  transcript_id AT1G07260.1  
At1g07270	chr1:002232676	0.0	C/2232676-2232897,2232490-2232583,2232189-2232409,2232027-2232101,2231846-2231955,2231661-2231767,2231509-2231568,2231320-2231393,2231144-2231194,2230978-2231027,2230708-2230789,2230516-2230605,2230326-2230388,2230109-2230204,2229887-2229976,2229757-2229789	AT1G07270.1  CDS  gene_syn F10K1.2, F10K1_2  go_process DNA replication|GO:0006260||ISS  go_process regulation of cell cycle|GO:0051726||ISS  product cell division control protein CDC6b, putative (CDC6b)  note cell division control protein CDC6b, putative (CDC6b); INVOLVED IN: regulation of cell cycle, DNA replication; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: CDC6, C-terminal (InterPro:IPR015163), Cell division control, Cdc6 (InterPro:IPR016314); BEST Arabidopsis thaliana protein match is: CDC6 (CELL DIVISION CONTROL 6) (TAIR:AT2G29680.2); Has 1022 Blast hits to 1018 proteins in 250 species: Archae - 232; Bacteria - 0; Metazoa - 319; Fungi - 194; Plants - 67; Viruses - 0; Other Eukaryotes - 210 (source: NCBI BLink).  protein_id AT1G07270.1p  transcript_id AT1G07270.1  protein_id AT1G07270.1p  transcript_id AT1G07270.1  
At1g07280	chr1:002238505	0.0	W/2238505-2239910,2240739-2240991	AT1G07280.1  CDS  gene_syn F22G5.38, F22G5_38  go_component chloroplast|GO:0009507||IEA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT2G29670.1); Has 381 Blast hits to 218 proteins in 33 species: Archae - 4; Bacteria - 98; Metazoa - 1; Fungi - 2; Plants - 229; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G07280.1p  transcript_id AT1G07280.1  protein_id AT1G07280.1p  transcript_id AT1G07280.1  
At1g07280	chr1:002238505	0.0	W/2238505-2239910,2240739-2240991	AT1G07280.2  CDS  gene_syn F22G5.38, F22G5_38  go_component chloroplast|GO:0009507||IEA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT2G29670.1); Has 381 Blast hits to 218 proteins in 33 species: Archae - 4; Bacteria - 98; Metazoa - 1; Fungi - 2; Plants - 229; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G07280.2p  transcript_id AT1G07280.2  protein_id AT1G07280.2p  transcript_id AT1G07280.2  
At1g07280	chr1:002238505	0.0	W/2238505-2239910,2240739-2240991	AT1G07280.3  CDS  gene_syn F22G5.38, F22G5_38  go_component chloroplast|GO:0009507||IEA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT2G29670.1); Has 381 Blast hits to 218 proteins in 33 species: Archae - 4; Bacteria - 98; Metazoa - 1; Fungi - 2; Plants - 229; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G07280.3p  transcript_id AT1G07280.3  protein_id AT1G07280.3p  transcript_id AT1G07280.3  
At1g07290	chr1:002244277	0.0	C/2244277-2244428,2243968-2244160,2243745-2243884,2243535-2243664,2243345-2243442,2243107-2243261,2242654-2242770,2242461-2242558,2242284-2242327	AT1G07290.1  CDS  gene_syn F22G5.37, F22G5_37  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleotide-sugar transmembrane transporter activity|GO:0005338||ISS  product nucleotide-sugar transmembrane transporter  note nucleotide-sugar transmembrane transporter; FUNCTIONS IN: nucleotide-sugar transmembrane transporter activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, flower, root, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: GONST1 (Golgi Nucleotide Sugar Transporter 1); GDP-mannose transmembrane transporter/ nucleotide-sugar transmembrane transporter (TAIR:AT2G13650.1); Has 465 Blast hits to 465 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 201; Fungi - 138; Plants - 79; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G07290.1p  transcript_id AT1G07290.1  protein_id AT1G07290.1p  transcript_id AT1G07290.1  
At1g07300	chr1:002245914	0.0	C/2245914-2246300	AT1G07300.1  CDS  gene_syn F22G5.36, F22G5_36  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product josephin protein-related  note josephin protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: JOSL (JOSEPHIN-LIKE PROTEIN) (TAIR:AT2G29640.1); Has 25 Blast hits to 25 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G07300.1p  transcript_id AT1G07300.1  protein_id AT1G07300.1p  transcript_id AT1G07300.1  
At1g07310	chr1:002247775	0.0	C/2247775-2248833	AT1G07310.1  CDS  gene_syn F22G5.35, F22G5_35  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT5G23950.1); Has 14464 Blast hits to 9550 proteins in 585 species: Archae - 8; Bacteria - 824; Metazoa - 5733; Fungi - 2653; Plants - 3332; Viruses - 448; Other Eukaryotes - 1466 (source: NCBI BLink).  protein_id AT1G07310.1p  transcript_id AT1G07310.1  protein_id AT1G07310.1p  transcript_id AT1G07310.1  
At1g07320	chr1:002249190	0.0	W/2249190-2250021,2250173-2250189	AT1G07320.1  CDS  gene_syn F22G5.34, F22G5_34, RIBOSOMAL PROTEIN L4, RPL4  gene RPL4  function encodes a plastid ribosomal protein L4  go_component nucleus|GO:0005634|14617066|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component plastid large ribosomal subunit|GO:0000311|9461586|TAS  go_component ribosome|GO:0005840||ISS  go_component plastid ribosome|GO:0009547|9461586|IPI  go_process translation|GO:0006412|9461586|TAS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735|9461586|ISS  go_function structural constituent of ribosome|GO:0003735||ISS  go_function poly(U) binding|GO:0008266|17511964|IDA  product RPL4; poly(U) binding / structural constituent of ribosome  note RPL4; FUNCTIONS IN: structural constituent of ribosome, poly(U) binding; INVOLVED IN: translation; LOCATED IN: in 10 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4/L1e, bacterial-type (InterPro:IPR013005), Ribosomal protein L4 (InterPro:IPR015498), Ribosomal protein L4/L1e (InterPro:IPR002136); BEST Arabidopsis thaliana protein match is: ribosomal protein L4 family protein (TAIR:AT2G20060.1); Has 5314 Blast hits to 5314 proteins in 1472 species: Archae - 3; Bacteria - 2934; Metazoa - 100; Fungi - 65; Plants - 60; Viruses - 0; Other Eukaryotes - 2152 (source: NCBI BLink).  protein_id AT1G07320.1p  transcript_id AT1G07320.1  protein_id AT1G07320.1p  transcript_id AT1G07320.1  
At1g07320	chr1:002249190	0.0	W/2249190-2250021,2250179-2250189	AT1G07320.2  CDS  gene_syn F22G5.34, F22G5_34, RIBOSOMAL PROTEIN L4, RPL4  gene RPL4  function encodes a plastid ribosomal protein L4  go_component nucleus|GO:0005634|14617066|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component plastid large ribosomal subunit|GO:0000311|9461586|TAS  go_component ribosome|GO:0005840||ISS  go_component plastid ribosome|GO:0009547|9461586|IPI  go_process translation|GO:0006412|9461586|TAS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735|9461586|ISS  go_function structural constituent of ribosome|GO:0003735||ISS  go_function poly(U) binding|GO:0008266|17511964|IDA  product RPL4; poly(U) binding / structural constituent of ribosome  note RPL4; FUNCTIONS IN: structural constituent of ribosome, poly(U) binding; INVOLVED IN: translation; LOCATED IN: in 9 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4 (InterPro:IPR015498), Ribosomal protein L4/L1e, bacterial-type (InterPro:IPR013005), Ribosomal protein L4/L1e (InterPro:IPR002136); BEST Arabidopsis thaliana protein match is: ribosomal protein L4 family protein (TAIR:AT2G20060.1); Has 5314 Blast hits to 5314 proteins in 1472 species: Archae - 3; Bacteria - 2934; Metazoa - 100; Fungi - 65; Plants - 60; Viruses - 0; Other Eukaryotes - 2152 (source: NCBI BLink).  protein_id AT1G07320.2p  transcript_id AT1G07320.2  protein_id AT1G07320.2p  transcript_id AT1G07320.2  
At1g07320	chr1:002249190	0.0	W/2249190-2250025,2250173-2250173	AT1G07320.4  CDS  gene_syn F22G5.34, F22G5_34, RIBOSOMAL PROTEIN L4, RPL4  gene RPL4  function encodes a plastid ribosomal protein L4  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component plastid large ribosomal subunit|GO:0000311|9461586|TAS  go_component ribosome|GO:0005840||ISS  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component plastid ribosome|GO:0009547|9461586|IPI  go_process translation|GO:0006412|9461586|TAS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735|9461586|ISS  go_function structural constituent of ribosome|GO:0003735||ISS  go_function poly(U) binding|GO:0008266|17511964|IDA  product RPL4; poly(U) binding / structural constituent of ribosome  note RPL4; FUNCTIONS IN: structural constituent of ribosome, poly(U) binding; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4 (InterPro:IPR015498), Ribosomal protein L4/L1e, bacterial-type (InterPro:IPR013005), Ribosomal protein L4/L1e (InterPro:IPR002136); BEST Arabidopsis thaliana protein match is: ribosomal protein L4 family protein (TAIR:AT2G20060.1); Has 5314 Blast hits to 5314 proteins in 1472 species: Archae - 3; Bacteria - 2934; Metazoa - 100; Fungi - 65; Plants - 60; Viruses - 0; Other Eukaryotes - 2152 (source: NCBI BLink).  protein_id AT1G07320.4p  transcript_id AT1G07320.4  protein_id AT1G07320.4p  transcript_id AT1G07320.4  
At1g07320	chr1:002249190	0.0	W/2249190-2250026	AT1G07320.3  CDS  gene_syn F22G5.34, F22G5_34, RIBOSOMAL PROTEIN L4, RPL4  gene RPL4  function encodes a plastid ribosomal protein L4  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component plastid large ribosomal subunit|GO:0000311|9461586|TAS  go_component ribosome|GO:0005840||ISS  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component plastid ribosome|GO:0009547|9461586|IPI  go_process translation|GO:0006412|9461586|TAS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735|9461586|ISS  go_function structural constituent of ribosome|GO:0003735||ISS  go_function poly(U) binding|GO:0008266|17511964|IDA  product RPL4; poly(U) binding / structural constituent of ribosome  note RPL4; FUNCTIONS IN: structural constituent of ribosome, poly(U) binding; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4 (InterPro:IPR015498), Ribosomal protein L4/L1e, bacterial-type (InterPro:IPR013005), Ribosomal protein L4/L1e (InterPro:IPR002136); BEST Arabidopsis thaliana protein match is: ribosomal protein L4 family protein (TAIR:AT2G20060.1); Has 5314 Blast hits to 5314 proteins in 1472 species: Archae - 3; Bacteria - 2934; Metazoa - 100; Fungi - 65; Plants - 60; Viruses - 0; Other Eukaryotes - 2152 (source: NCBI BLink).  protein_id AT1G07320.3p  transcript_id AT1G07320.3  protein_id AT1G07320.3p  transcript_id AT1G07320.3  
At1g07330	chr1:002251131	0.0	W/2251131-2251208,2251413-2252268,2252355-2253115,2253223-2253585	AT1G07330.1  CDS  gene_syn F22G5.33, F22G5_33  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, sepal, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29620.1); Has 517 Blast hits to 459 proteins in 103 species: Archae - 2; Bacteria - 36; Metazoa - 156; Fungi - 37; Plants - 51; Viruses - 0; Other Eukaryotes - 235 (source: NCBI BLink).  protein_id AT1G07330.1p  transcript_id AT1G07330.1  protein_id AT1G07330.1p  transcript_id AT1G07330.1  
At1g07340	chr1:002254873	0.0	W/2254873-2255005,2255088-2255407,2255570-2256196,2256296-2256712	AT1G07340.1  CDS  gene_syn ATSTP2, F22G5.32, F22G5_32, STP2, SUGAR TRANSPORTER 2  gene ATSTP2  go_component integral to plasma membrane|GO:0005887|10074716|ISS  go_component membrane|GO:0016020||ISS  go_process pollen development|GO:0009555|10074716|TAS  go_process monosaccharide transport|GO:0015749|10074716|TAS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  go_function monosaccharide transmembrane transporter activity|GO:0015145|10074716|IDA  product ATSTP2 (SUGAR TRANSPORTER 2); carbohydrate transmembrane transporter/ monosaccharide transmembrane transporter/ sugar:hydrogen symporter  note SUGAR TRANSPORTER 2 (ATSTP2); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, monosaccharide transmembrane transporter activity; INVOLVED IN: pollen development, monosaccharide transport; LOCATED IN: integral to plasma membrane, membrane; EXPRESSED IN: leaf whorl, petal, sepal, flower, tetrad of microspores; EXPRESSED DURING: 4 anthesis, F microspore release stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: STP6 (SUGAR TRANSPORTER 6); carbohydrate transmembrane transporter/ monosaccharide transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT3G05960.1); Has 13776 Blast hits to 13717 proteins in 1005 species: Archae - 188; Bacteria - 4275; Metazoa - 3015; Fungi - 4403; Plants - 1103; Viruses - 0; Other Eukaryotes - 792 (source: NCBI BLink).  protein_id AT1G07340.1p  transcript_id AT1G07340.1  protein_id AT1G07340.1p  transcript_id AT1G07340.1  
At1g07350	chr1:002259486	0.0	C/2259486-2259586,2259277-2259385,2259003-2259152,2258816-2258845	AT1G07350.2  CDS  gene_syn F22G5.31, F22G5_31  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process RNA splicing|GO:0008380|16807317|NAS  go_function RNA binding|GO:0003723||ISS  product transformer serine/arginine-rich ribonucleoprotein, putative  note transformer serine/arginine-rich ribonucleoprotein, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA splicing; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nucleic acid binding / nucleotide binding (TAIR:AT4G35785.3); Has 9446 Blast hits to 8645 proteins in 528 species: Archae - 6; Bacteria - 859; Metazoa - 5288; Fungi - 914; Plants - 1524; Viruses - 0; Other Eukaryotes - 855 (source: NCBI BLink).  protein_id AT1G07350.2p  transcript_id AT1G07350.2  protein_id AT1G07350.2p  transcript_id AT1G07350.2  
At1g07350	chr1:002260012	0.0	C/2260012-2260101,2259486-2259586,2259277-2259385,2259003-2259152,2258539-2258602,2257988-2258447,2257732-2257906	AT1G07350.1  CDS  gene_syn F22G5.31, F22G5_31  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process RNA splicing|GO:0008380|16807317|NAS  go_function RNA binding|GO:0003723||ISS  product transformer serine/arginine-rich ribonucleoprotein, putative  note transformer serine/arginine-rich ribonucleoprotein, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA splicing; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nucleic acid binding / nucleotide binding (TAIR:AT4G35785.2); Has 25544 Blast hits to 16897 proteins in 693 species: Archae - 12; Bacteria - 1110; Metazoa - 16477; Fungi - 2700; Plants - 2768; Viruses - 163; Other Eukaryotes - 2314 (source: NCBI BLink).  protein_id AT1G07350.1p  transcript_id AT1G07350.1  protein_id AT1G07350.1p  transcript_id AT1G07350.1  
At1g07360	chr1:002262691	0.0	C/2262691-2262795,2262085-2262354,2261740-2261963,2260562-2261408	AT1G07360.1  CDS  gene_syn F22G5.30, F22G5_30  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein  note zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT2G29580.1); Has 15841 Blast hits to 11209 proteins in 616 species: Archae - 12; Bacteria - 933; Metazoa - 6494; Fungi - 2796; Plants - 2983; Viruses - 266; Other Eukaryotes - 2357 (source: NCBI BLink).  protein_id AT1G07360.1p  transcript_id AT1G07360.1  protein_id AT1G07360.1p  transcript_id AT1G07360.1  
At1g07370	chr1:002263204	0.0	W/2263204-2263522,2263715-2263867,2263951-2264048,2264161-2264382	AT1G07370.1  CDS  gene_syn F22G5.29, F22G5_29, PCNA1, PROLIFERATING CELLULAR NUCLEAR ANTIGEN  gene PCNA1  function Encodes putative proliferating cell nuclear antigen involved in cell cycle regulation.  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleus|GO:0005634||ISS  go_component nucleolus|GO:0005730|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process regulation of DNA replication|GO:0006275||ISS  go_process regulation of cell cycle|GO:0051726|12631321|ISS  go_function DNA binding|GO:0003677||ISS  go_function protein binding|GO:0005515|16771839|IPI  go_function DNA polymerase processivity factor activity|GO:0030337||ISS  product PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN); DNA binding / DNA polymerase processivity factor/ protein binding  note PROLIFERATING CELLULAR NUCLEAR ANTIGEN (PCNA1); FUNCTIONS IN: protein binding, DNA binding, DNA polymerase processivity factor activity; INVOLVED IN: regulation of cell cycle, regulation of DNA replication; LOCATED IN: nucleolus, nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proliferating cell nuclear antigen, PCNA (InterPro:IPR000730); BEST Arabidopsis thaliana protein match is: PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2); DNA binding / DNA polymerase processivity factor (TAIR:AT2G29570.1); Has 1496 Blast hits to 1488 proteins in 340 species: Archae - 256; Bacteria - 0; Metazoa - 266; Fungi - 105; Plants - 119; Viruses - 68; Other Eukaryotes - 682 (source: NCBI BLink).  protein_id AT1G07370.1p  transcript_id AT1G07370.1  protein_id AT1G07370.1p  transcript_id AT1G07370.1  
At1g07380	chr1:002267972	0.0	C/2267972-2268306,2267655-2267863,2267209-2267553,2266855-2267119,2266473-2266743,2266258-2266383,2266113-2266176,2265858-2266027,2265474-2265768,2264829-2265088	AT1G07380.1  CDS  gene_syn F22G5.28, F22G5_28  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  go_function ceramidase activity|GO:0017040||ISS  product ceramidase family protein  note ceramidase family protein; FUNCTIONS IN: ceramidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Neutral/alkaline nonlysosomal ceramidase (InterPro:IPR006823); BEST Arabidopsis thaliana protein match is: ceramidase family protein (TAIR:AT2G38010.1); Has 458 Blast hits to 375 proteins in 133 species: Archae - 0; Bacteria - 160; Metazoa - 157; Fungi - 68; Plants - 30; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT1G07380.1p  transcript_id AT1G07380.1  protein_id AT1G07380.1p  transcript_id AT1G07380.1  
At1g07390	chr1:002269893	0.0	W/2269893-2270199,2270577-2270732,2270832-2270903,2271010-2271084,2271178-2271249,2271342-2271416,2271521-2271595,2271675-2271736,2271808-2271879,2272022-2272034,2272123-2272191,2272451-2274654	AT1G07390.3  CDS  gene_syn AtRLP1, F22G5.26, F22G5_26, Receptor Like Protein 1  gene AtRLP1  go_component cellular_component|GO:0005575||ND  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product protein binding  note Receptor Like Protein 1 (AtRLP1); FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210); BEST Arabidopsis thaliana protein match is: AtRLP13 (Receptor Like Protein 13); protein binding (TAIR:AT1G74170.1).  protein_id AT1G07390.3p  transcript_id AT1G07390.3  protein_id AT1G07390.3p  transcript_id AT1G07390.3  
At1g07390	chr1:002269893	0.0	W/2269893-2270199,2270577-2270732,2270832-2270903,2271010-2271084,2271178-2271249,2271342-2271416,2271521-2271595,2272123-2272191,2272451-2274654	AT1G07390.1  CDS  gene_syn AtRLP1, F22G5.26, F22G5_26, Receptor Like Protein 1  gene AtRLP1  go_component cellular_component|GO:0005575||ND  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product protein binding  note Receptor Like Protein 1 (AtRLP1); FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210); BEST Arabidopsis thaliana protein match is: AtRLP13 (Receptor Like Protein 13); protein binding (TAIR:AT1G74170.1); Has 75962 Blast hits to 20848 proteins in 826 species: Archae - 63; Bacteria - 5379; Metazoa - 28244; Fungi - 1286; Plants - 35488; Viruses - 24; Other Eukaryotes - 5478 (source: NCBI BLink).  protein_id AT1G07390.1p  transcript_id AT1G07390.1  protein_id AT1G07390.1p  transcript_id AT1G07390.1  
At1g07390	chr1:002270633	0.0	W/2270633-2270732,2270832-2270903,2271010-2271084,2271178-2271249,2271342-2271416,2271521-2271595,2272123-2272191,2272451-2274654	AT1G07390.2  CDS  gene_syn AtRLP1, F22G5.26, F22G5_26, Receptor Like Protein 1  gene AtRLP1  go_component cellular_component|GO:0005575||ND  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product protein binding  note Receptor Like Protein 1 (AtRLP1); FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP15 (Receptor Like Protein 15); protein binding (TAIR:AT1G74190.1).  protein_id AT1G07390.2p  transcript_id AT1G07390.2  protein_id AT1G07390.2p  transcript_id AT1G07390.2  
At1g07400	chr1:002275148	0.0	W/2275148-2275621	AT1G07400.1  CDS  gene_syn F22G5.25, F22G5_25  go_process response to oxidative stress|GO:0006979|15634198|IEP  go_process response to heat|GO:0009408||ISS  product 17.8 kDa class I heat shock protein (HSP17.8-CI)  note 17.8 kDa class I heat shock protein (HSP17.8-CI); INVOLVED IN: response to oxidative stress, response to heat; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: 17.6 kDa class I heat shock protein (HSP17.6A-CI) (TAIR:AT1G59860.1); Has 4521 Blast hits to 4521 proteins in 968 species: Archae - 130; Bacteria - 2463; Metazoa - 119; Fungi - 227; Plants - 1004; Viruses - 0; Other Eukaryotes - 578 (source: NCBI BLink).  protein_id AT1G07400.1p  transcript_id AT1G07400.1  protein_id AT1G07400.1p  transcript_id AT1G07400.1  
At1g07410	chr1:002276270	0.0	W/2276270-2276434,2276675-2277154	AT1G07410.1  CDS  gene_syn ARABIDOPSIS RAB GTPASE HOMOLOG A2B, ATRAB-A2B, ATRABA2B, F22G5.24, F22G5_24, RAB GTPASE HOMOLOG A2B, RAB-A2B  gene ATRABA2B  go_component plasma membrane|GO:0005886|17644812|IDA  go_process intracellular protein transport|GO:0006886||IEA  go_process nucleocytoplasmic transport|GO:0006913||IEA  go_process signal transduction|GO:0007165||IEA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTPase activity|GO:0003924||IEA  go_function protein binding|GO:0005515||IEA  go_function GTP binding|GO:0005525||IEA  go_component endosome|GO:0005768|18239134|IDA  go_component cell plate|GO:0009504|18239134|IDA  go_function GTP binding|GO:0005525||ISS  product ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B); GTP binding / GTPase/ protein binding  note ARABIDOPSIS RAB GTPASE HOMOLOG A2B (ATRABA2B); FUNCTIONS IN: protein binding, GTP binding, GTPase activity; INVOLVED IN: intracellular protein transport, signal transduction, nucleocytoplasmic transport, protein transport, small GTPase mediated signal transduction; LOCATED IN: endosome, plasma membrane, cell plate; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), ADP-ribosylation factor (InterPro:IPR006688), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Rab11-related (InterPro:IPR015595), Ras small GTPase, Rho type (InterPro:IPR003578), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: ATRABA2D (HOARABIDOPSIS RAB GTPASE HOMOLOG A2D); GTP binding (TAIR:AT5G59150.1); Has 23212 Blast hits to 23174 proteins in 634 species: Archae - 19; Bacteria - 112; Metazoa - 12895; Fungi - 3006; Plants - 2078; Viruses - 19; Other Eukaryotes - 5083 (source: NCBI BLink).  protein_id AT1G07410.1p  transcript_id AT1G07410.1  protein_id AT1G07410.1p  transcript_id AT1G07410.1  
At1g07420	chr1:002277910	0.0	W/2277910-2277939,2278587-2278724,2278972-2279117,2279258-2279377,2279466-2279678,2279777-2279857,2279961-2280033	AT1G07420.1  CDS  gene_syn ATSMO2, F22G5.23, F22G5_23, SMO2-1, STEROL 4-ALPHA-METHYL-OXIDASE 2, STEROL 4-ALPHA-METHYL-OXIDASE 2-1  gene SMO2-1  function Arabidopsis thaliana sterol 4-alpha-methyl-oxidase mRNA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process fatty acid biosynthetic process|GO:0006633||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function C-4 methylsterol oxidase activity|GO:0000254|11707264|IGI  go_function 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase activity|GO:0080065|14653780|IGI  product SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1); 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase  note STEROL 4-ALPHA-METHYL-OXIDASE 2-1 (SMO2-1); FUNCTIONS IN: 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase activity, C-4 methylsterol oxidase activity; INVOLVED IN: oxidation reduction, fatty acid biosynthetic process; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2); 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase (TAIR:AT2G29390.2); Has 2164 Blast hits to 2161 proteins in 368 species: Archae - 0; Bacteria - 491; Metazoa - 391; Fungi - 452; Plants - 274; Viruses - 2; Other Eukaryotes - 554 (source: NCBI BLink).  protein_id AT1G07420.1p  transcript_id AT1G07420.1  protein_id AT1G07420.1p  transcript_id AT1G07420.1  
At1g07420	chr1:002278918	0.0	W/2278918-2279117,2279258-2279377,2279466-2279678,2279777-2279857,2279961-2280033	AT1G07420.2  CDS  gene_syn ATSMO2, F22G5.23, F22G5_23, SMO2-1, STEROL 4-ALPHA-METHYL-OXIDASE 2, STEROL 4-ALPHA-METHYL-OXIDASE 2-1  gene SMO2-1  function Arabidopsis thaliana sterol 4-alpha-methyl-oxidase mRNA  go_process fatty acid biosynthetic process|GO:0006633||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function C-4 methylsterol oxidase activity|GO:0000254|11707264|IGI  go_function 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase activity|GO:0080065|14653780|IGI  product SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1); 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase  note STEROL 4-ALPHA-METHYL-OXIDASE 2-1 (SMO2-1); FUNCTIONS IN: 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase activity, C-4 methylsterol oxidase activity; INVOLVED IN: oxidation reduction, fatty acid biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2); 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase (TAIR:AT2G29390.3); Has 2143 Blast hits to 2140 proteins in 366 species: Archae - 0; Bacteria - 487; Metazoa - 390; Fungi - 448; Plants - 271; Viruses - 2; Other Eukaryotes - 545 (source: NCBI BLink).  protein_id AT1G07420.2p  transcript_id AT1G07420.2  protein_id AT1G07420.2p  transcript_id AT1G07420.2  
At1g07430	chr1:002282153	0.0	C/2282153-2282656,2281748-2282059,2281151-2281663	AT1G07430.1  CDS  gene_syn F22G5.22, F22G5_22  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT2G29380.1); Has 4401 Blast hits to 4389 proteins in 274 species: Archae - 0; Bacteria - 82; Metazoa - 1419; Fungi - 539; Plants - 1372; Viruses - 7; Other Eukaryotes - 982 (source: NCBI BLink).  protein_id AT1G07430.1p  transcript_id AT1G07430.1  protein_id AT1G07430.1p  transcript_id AT1G07430.1  
At1g07440	chr1:002287586	0.0	C/2287586-2287665,2287300-2287507,2287011-2287227,2286700-2286818	AT1G07440.2  CDS  gene_syn F22G5.39, F22G5_39  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product tropinone reductase, putative / tropine dehydrogenase, putative  note tropinone reductase, putative / tropine dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT2G29340.3); Has 72868 Blast hits to 72672 proteins in 2161 species: Archae - 439; Bacteria - 42225; Metazoa - 4389; Fungi - 3613; Plants - 1421; Viruses - 2; Other Eukaryotes - 20779 (source: NCBI BLink).  protein_id AT1G07440.2p  transcript_id AT1G07440.2  protein_id AT1G07440.2p  transcript_id AT1G07440.2  
At1g07440	chr1:002287586	0.0	C/2287586-2287665,2287300-2287507,2287011-2287227,2286712-2286818,2286436-2286624	AT1G07440.1  CDS  gene_syn F22G5.39, F22G5_39  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product tropinone reductase, putative / tropine dehydrogenase, putative  note tropinone reductase, putative / tropine dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT2G29340.2); Has 82964 Blast hits to 82757 proteins in 2203 species: Archae - 469; Bacteria - 45784; Metazoa - 4525; Fungi - 4011; Plants - 1547; Viruses - 5; Other Eukaryotes - 26623 (source: NCBI BLink).  protein_id AT1G07440.1p  transcript_id AT1G07440.1  protein_id AT1G07440.1p  transcript_id AT1G07440.1  
At1g07450	chr1:002289189	0.0	C/2289189-2289256,2288849-2289056,2288500-2288713,2288309-2288415,2288038-2288223	AT1G07450.1  CDS  gene_syn F22G5.20, F22G5_20  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product tropinone reductase, putative / tropine dehydrogenase, putative  note tropinone reductase, putative / tropine dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: TRI (tropinone reductase); binding / catalytic/ oxidoreductase (TAIR:AT2G29330.1); Has 74240 Blast hits to 74143 proteins in 2154 species: Archae - 445; Bacteria - 41494; Metazoa - 3906; Fungi - 3541; Plants - 1477; Viruses - 2; Other Eukaryotes - 23375 (source: NCBI BLink).  protein_id AT1G07450.1p  transcript_id AT1G07450.1  protein_id AT1G07450.1p  transcript_id AT1G07450.1  
At1g07460	chr1:002290201	0.0	W/2290201-2290977	AT1G07460.1  CDS  gene_syn F22G5.19, F22G5_19  go_function sugar binding|GO:0005529||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function carbohydrate binding|GO:0030246||ISS  product legume lectin family protein  note legume lectin family protein; FUNCTIONS IN: carbohydrate binding, sugar binding; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin protein kinase, putative (TAIR:AT2G29220.1); Has 1591 Blast hits to 1578 proteins in 115 species: Archae - 0; Bacteria - 17; Metazoa - 0; Fungi - 0; Plants - 1566; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G07460.1p  transcript_id AT1G07460.1  protein_id AT1G07460.1p  transcript_id AT1G07460.1  
At1g07470	chr1:002291723	0.0	W/2291723-2291848,2292027-2292191,2292305-2292457,2292540-2292585,2292659-2292717,2292896-2293006,2293336-2293479,2293777-2293837,2293926-2294080,2294171-2294254,2294327-2294350	AT1G07470.1  CDS  gene_syn F22G5.18, F22G5_18  go_component transcription factor TFIIA complex|GO:0005672||IEA  go_process transcription initiation from RNA polymerase II promoter|GO:0006367||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  go_process transcription|GO:0006350||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcription factor IIA large subunit, putative / TFIIA large subunit, putative  note transcription factor IIA large subunit, putative / TFIIA large subunit, putative; FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter, transcription; LOCATED IN: transcription factor TFIIA complex; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Transcription factor IIA, alpha/beta subunit (InterPro:IPR004855), Transcription factor IIA, beta-barrel (InterPro:IPR009088), Transcription factor IIA, alpha subunit, N-terminal (InterPro:IPR013028), Transcription factor IIA, helical (InterPro:IPR009083); BEST Arabidopsis thaliana protein match is: transcription factor IIA large subunit / TFIIA large subunit (TFIIA-L) (TAIR:AT1G07480.2); Has 561 Blast hits to 467 proteins in 136 species: Archae - 0; Bacteria - 14; Metazoa - 345; Fungi - 107; Plants - 45; Viruses - 6; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT1G07470.1p  transcript_id AT1G07470.1  protein_id AT1G07470.1p  transcript_id AT1G07470.1  
At1g07473	chr1:002294728	0.0	C/2294728-2295105	AT1G07473.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07476.1); Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G07473.1p  transcript_id AT1G07473.1  protein_id AT1G07473.1p  transcript_id AT1G07473.1  
At1g07476	chr1:002295805	0.0	W/2295805-2296353	AT1G07476.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07473.1); Has 10 Blast hits to 10 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G07476.1p  transcript_id AT1G07476.1  protein_id AT1G07476.1p  transcript_id AT1G07476.1  
At1g07480	chr1:002299090	0.0	C/2299090-2299215,2298747-2298911,2298481-2298633,2298280-2298325,2298128-2298186,2297826-2297936,2297530-2297673,2297225-2297285,2296983-2297137,2296810-2296893,2296706-2296729	AT1G07480.1  CDS  gene_syn F22G5.14, F22G5_14  go_component transcription factor TFIIA complex|GO:0005672||IEA  go_process transcription initiation from RNA polymerase II promoter|GO:0006367||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  go_process transcription|GO:0006350||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcription factor IIA large subunit / TFIIA large subunit (TFIIA-L)  note transcription factor IIA large subunit / TFIIA large subunit (TFIIA-L); FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter, transcription; LOCATED IN: transcription factor TFIIA complex; CONTAINS InterPro DOMAIN/s: Transcription factor IIA, alpha/beta subunit (InterPro:IPR004855), Transcription factor IIA, beta-barrel (InterPro:IPR009088), Transcription factor IIA, alpha subunit, N-terminal (InterPro:IPR013028), Transcription factor IIA, helical (InterPro:IPR009083); BEST Arabidopsis thaliana protein match is: transcription factor IIA large subunit, putative / TFIIA large subunit, putative (TAIR:AT1G07470.1); Has 582 Blast hits to 492 proteins in 138 species: Archae - 0; Bacteria - 27; Metazoa - 349; Fungi - 106; Plants - 45; Viruses - 9; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT1G07480.1p  transcript_id AT1G07480.1  protein_id AT1G07480.1p  transcript_id AT1G07480.1  
At1g07480	chr1:002299090	0.0	C/2299090-2299215,2298747-2298911,2298481-2298633,2298280-2298325,2298128-2298186,2297826-2297936,2297530-2297673,2297225-2297285,2296983-2297137,2296810-2296893,2296706-2296729	AT1G07480.2  CDS  gene_syn F22G5.14, F22G5_14  go_component transcription factor TFIIA complex|GO:0005672||IEA  go_process transcription initiation from RNA polymerase II promoter|GO:0006367||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  go_process transcription|GO:0006350||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcription factor IIA large subunit / TFIIA large subunit (TFIIA-L)  note transcription factor IIA large subunit / TFIIA large subunit (TFIIA-L); FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter, transcription; LOCATED IN: transcription factor TFIIA complex; CONTAINS InterPro DOMAIN/s: Transcription factor IIA, alpha/beta subunit (InterPro:IPR004855), Transcription factor IIA, beta-barrel (InterPro:IPR009088), Transcription factor IIA, alpha subunit, N-terminal (InterPro:IPR013028), Transcription factor IIA, helical (InterPro:IPR009083); BEST Arabidopsis thaliana protein match is: transcription factor IIA large subunit, putative / TFIIA large subunit, putative (TAIR:AT1G07470.1); Has 582 Blast hits to 492 proteins in 138 species: Archae - 0; Bacteria - 27; Metazoa - 349; Fungi - 106; Plants - 45; Viruses - 9; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT1G07480.2p  transcript_id AT1G07480.2  protein_id AT1G07480.2p  transcript_id AT1G07480.2  
At1g07485	chr1:002301505	0.0	W/2301505-2301579,2301665-2301892	AT1G07485.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, leaf whorl, embryo, pedicel; EXPRESSED DURING: 4 anthesis, D bilateral stage; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G07485.1p  transcript_id AT1G07485.1  protein_id AT1G07485.1p  transcript_id AT1G07485.1  
At1g07490	chr1:002301526	0.0	C/2301526-2301849	AT1G07490.1  CDS  gene_syn DEVIL 9, DVL9, F22G5.13, F22G5_13, ROTUNDIFOLIA LIKE 3, RTFL3  gene RTFL3  go_component chloroplast|GO:0009507||IEA  go_process shoot development|GO:0048367|14871303|ISS  go_function molecular_function|GO:0003674||ND  product RTFL3 (ROTUNDIFOLIA LIKE 3)  note ROTUNDIFOLIA LIKE 3 (RTFL3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: shoot development; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); BEST Arabidopsis thaliana protein match is: RTFL2 (ROTUNDIFOLIA LIKE 2) (TAIR:AT2G29125.1); Has 5460 Blast hits to 618 proteins in 102 species: Archae - 0; Bacteria - 181; Metazoa - 2194; Fungi - 415; Plants - 106; Viruses - 0; Other Eukaryotes - 2564 (source: NCBI BLink).  protein_id AT1G07490.1p  transcript_id AT1G07490.1  protein_id AT1G07490.1p  transcript_id AT1G07490.1  
At1g07500	chr1:002304909	0.0	C/2304909-2305031,2304766-2304867	AT1G07500.1  CDS  gene_syn F22G5.11, F22G5_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, inflorescence meristem; Has 2 Blast hits to 2 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G07500.1p  transcript_id AT1G07500.1  protein_id AT1G07500.1p  transcript_id AT1G07500.1  
At1g07510	chr1:002305689	0.0	W/2305689-2305739,2305826-2306057,2306153-2306221,2306458-2306591,2306698-2307180,2307281-2308048,2308284-2308511,2308904-2309380	AT1G07510.1  CDS  gene_syn F22G5.10, F22G5_10, FtsH protease 10, ftsh10  gene ftsh10  function encodes an FtsH protease that is localized to the mitochondrion  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process proteolysis|GO:0006508||IEA  go_process protein catabolic process|GO:0030163||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_function ATP binding|GO:0005524||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component mitochondrion|GO:0005739|14630971|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_function ATPase activity|GO:0016887||ISS  product ftsh10 (FtsH protease 10); ATP binding / ATPase/ metalloendopeptidase/ nucleoside-triphosphatase/ nucleotide binding / zinc ion binding  note FtsH protease 10 (ftsh10); FUNCTIONS IN: in 6 functions; INVOLVED IN: proteolysis, protein catabolic process; LOCATED IN: mitochondrion, chloroplast thylakoid membrane, plastid; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: ftsh3 (FtsH protease 3); ATP-dependent peptidase/ ATPase (TAIR:AT2G29080.1); Has 26446 Blast hits to 24893 proteins in 1837 species: Archae - 877; Bacteria - 7859; Metazoa - 3977; Fungi - 2382; Plants - 1713; Viruses - 18; Other Eukaryotes - 9620 (source: NCBI BLink).  protein_id AT1G07510.1p  transcript_id AT1G07510.1  protein_id AT1G07510.1p  transcript_id AT1G07510.1  
At1g07520	chr1:002309718	0.0	C/2309718-2311805	AT1G07520.1  CDS  gene_syn F22G5.41, F22G5_41  go_component cellular_component|GO:0005575||ND  go_process response to chitin|GO:0010200|17722694|IEP  go_function transcription factor activity|GO:0003700||ISS  product scarecrow transcription factor family protein  note scarecrow transcription factor family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to chitin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: scarecrow transcription factor family protein (TAIR:AT2G29060.1); Has 1303 Blast hits to 1286 proteins in 175 species: Archae - 0; Bacteria - 6; Metazoa - 3; Fungi - 0; Plants - 1290; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G07520.1p  transcript_id AT1G07520.1  protein_id AT1G07520.1p  transcript_id AT1G07520.1  
At1g07530	chr1:002313828	0.0	C/2313828-2316137	AT1G07530.1  CDS  gene_syn ARABIDOPSIS THALIANA GRAS (GAI, RGA, SCR) 2, ATGRAS2, F22G5.9, F22G5_9, GRAS (GAI, RGA, SCR) 2, GRAS2, SCARECROW-LIKE 14, SCL14  gene SCL14  function Encodes a member of the GRAS family of transcription factors. The protein interacts with the TGA2 transcription factor and affects the transcription of stress-responsive genes. The protein is found in the nucleus and is also exported to the cytoplasm.  go_component nucleus|GO:0005634|18984675|IDA  go_component cytosol|GO:0005829|18984675|IDA  go_process response to xenobiotic stimulus|GO:0009410|18984675|IMP  go_process positive regulation of gene-specific transcription|GO:0043193|18984675|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product SCL14 (SCARECROW-LIKE 14); transcription factor  note SCARECROW-LIKE 14 (SCL14); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to xenobiotic stimulus, positive regulation of gene-specific transcription, regulation of transcription; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: scarecrow transcription factor family protein (TAIR:AT2G29060.1); Has 1400 Blast hits to 1357 proteins in 187 species: Archae - 0; Bacteria - 12; Metazoa - 27; Fungi - 3; Plants - 1349; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G07530.1p  transcript_id AT1G07530.1  protein_id AT1G07530.1p  transcript_id AT1G07530.1  
At1g07540	chr1:002320968	0.0	C/2320968-2321048,2320129-2320867,2319874-2320038,2319715-2319789,2319550-2319629,2319220-2319461,2318854-2319120,2318692-2318755,2318433-2318612	AT1G07540.1  CDS  gene_syn F22G5.8, F22G5_8, TRF-LIKE 2, TRFL2  gene TRFL2  function Arabidopsis thaliana telomere-binding protein, putative (At1g07540)  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product TRFL2 (TRF-LIKE 2); DNA binding  note TRF-LIKE 2 (TRFL2); FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: leaf whorl, petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: TRFL1 (TRF-LIKE 1); DNA bending/ DNA binding / telomeric DNA binding (TAIR:AT3G46590.2); Has 198 Blast hits to 194 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 4; Plants - 161; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G07540.1p  transcript_id AT1G07540.1  protein_id AT1G07540.1p  transcript_id AT1G07540.1  
At1g07550	chr1:002326431	0.0	C/2326431-2326512,2325768-2326305,2325108-2325586,2324888-2325032,2324727-2324798,2324588-2324659,2324417-2324494,2324185-2324330,2323904-2324100,2323671-2323797,2323523-2323588,2323229-2323415,2322709-2323114	AT1G07550.1  CDS  gene_syn F22G5.7, F22G5_7  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat protein kinase, putative  note leucine-rich repeat protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root, leaf; EXPRESSED DURING: LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT2G14510.1); Has 109121 Blast hits to 83970 proteins in 3052 species: Archae - 56; Bacteria - 7288; Metazoa - 36658; Fungi - 6016; Plants - 44126; Viruses - 346; Other Eukaryotes - 14631 (source: NCBI BLink).  protein_id AT1G07550.1p  transcript_id AT1G07550.1  protein_id AT1G07550.1p  transcript_id AT1G07550.1  
At1g07560	chr1:002327320	0.0	W/2327320-2327404,2327546-2328083,2328172-2328653,2328731-2328875,2328981-2329052,2329190-2329261,2329343-2329408,2329567-2329694,2329784-2329992,2330076-2330202,2330290-2330346,2330429-2330618,2330697-2331096	AT1G07560.1  CDS  gene_syn F22G5.6, F22G5_6  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat protein kinase, putative  note leucine-rich repeat protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT3G21340.1); Has 106745 Blast hits to 84902 proteins in 3094 species: Archae - 42; Bacteria - 7441; Metazoa - 36761; Fungi - 6210; Plants - 41389; Viruses - 325; Other Eukaryotes - 14577 (source: NCBI BLink).  protein_id AT1G07560.1p  transcript_id AT1G07560.1  protein_id AT1G07560.1p  transcript_id AT1G07560.1  
At1g07570	chr1:002333168	0.0	C/2333168-2333210,2332614-2332930,2332397-2332532,2332152-2332294,2331923-2332046,2331369-2331838	AT1G07570.1  CDS  gene_syn APK1, APK1A, F22G5.5, F22G5_5  gene APK1A  function Protein kinase capable of phosphorylating tyrosine, serine, and threonine residues  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein serine/threonine kinase activity|GO:0004674|1450380|IDA  go_function kinase activity|GO:0016301||ISS  product APK1A; kinase/ protein serine/threonine kinase  note APK1A; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: APK1B; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT2G28930.2); Has 81089 Blast hits to 80215 proteins in 2709 species: Archae - 42; Bacteria - 7100; Metazoa - 36128; Fungi - 6026; Plants - 18119; Viruses - 330; Other Eukaryotes - 13344 (source: NCBI BLink).  protein_id AT1G07570.1p  transcript_id AT1G07570.1  protein_id AT1G07570.1p  transcript_id AT1G07570.1  
At1g07570	chr1:002333168	0.0	C/2333168-2333210,2332614-2332930,2332397-2332532,2332152-2332294,2331923-2332046,2331369-2331838	AT1G07570.2  CDS  gene_syn APK1, APK1A, F22G5.5, F22G5_5  gene APK1A  function Protein kinase capable of phosphorylating tyrosine, serine, and threonine residues  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein serine/threonine kinase activity|GO:0004674|1450380|IDA  go_function kinase activity|GO:0016301||ISS  product APK1A; kinase/ protein serine/threonine kinase  note APK1A; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: APK1B; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT2G28930.2); Has 81089 Blast hits to 80215 proteins in 2709 species: Archae - 42; Bacteria - 7100; Metazoa - 36128; Fungi - 6026; Plants - 18119; Viruses - 330; Other Eukaryotes - 13344 (source: NCBI BLink).  protein_id AT1G07570.2p  transcript_id AT1G07570.2  protein_id AT1G07570.2p  transcript_id AT1G07570.2  
At1g07580	chr1:002334822	0.0	W/2334822-2334894	AT1G07580.1  tRNA  gene_syn 51945.TRNA-ALA-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: AGC)  transcript_id AT1G07580.1  
At1g07590	chr1:002338128	0.0	C/2338128-2338481,2336649-2337899	AT1G07590.1  CDS  gene_syn F22G5.3, F22G5_3  go_component mitochondrion|GO:0005739||IEA  go_process response to cadmium ion|GO:0046686|16502469|IEP  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT1G15480.1); Has 6623 Blast hits to 3122 proteins in 84 species: Archae - 0; Bacteria - 4; Metazoa - 30; Fungi - 22; Plants - 6377; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink).  protein_id AT1G07590.1p  transcript_id AT1G07590.1  protein_id AT1G07590.1p  transcript_id AT1G07590.1  
At1g07600	chr1:002339266	0.0	C/2339266-2339321,2338904-2338985	AT1G07600.1  CDS  gene_syn ATMT-2, ATMT-Q, F22G5.2, LIGHT STRESS-REGULATED 4, LSR4, METALLOTHIONEIN 1, METALLOTHIONEIN 1A, METALLOTHIONEIN 2, METALLOTHIONEIN Q, MT-Q, MT1, MT1A  gene MT1A  function metallothionein, binds to and detoxifies excess copper and other metals, limiting oxidative damage.  go_component cellular_component|GO:0005575||ND  go_process response to high light intensity|GO:0009644|11683875|IEP  go_process response to copper ion|GO:0046688|8061521|IEP  go_process response to copper ion|GO:0046688|8061521|IGI  go_function copper ion binding|GO:0005507|9112777|IDA  go_function metal ion binding|GO:0046872|7612924|TAS  product MT1A (METALLOTHIONEIN 1A); copper ion binding / metal ion binding  note METALLOTHIONEIN 1A (MT1A); FUNCTIONS IN: copper ion binding, metal ion binding; INVOLVED IN: response to high light intensity, response to copper ion; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; Has 333 Blast hits to 264 proteins in 88 species: Archae - 0; Bacteria - 2; Metazoa - 80; Fungi - 14; Plants - 166; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT1G07600.1p  transcript_id AT1G07600.1  protein_id AT1G07600.1p  transcript_id AT1G07600.1  
At1g07610	chr1:002341603	0.0	W/2341603-2341658,2341784-2341865	AT1G07610.1  CDS  gene_syn F22G5.40, METALLOTHIONEIN 1C, MT1C  gene MT1C  function one of the five metallothioneins (MTs) genes identified in Arabidopsis. MTs are cysteine-rich proteins required for heavy metal tolerance.  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process response to copper ion|GO:0046688|7565594|ISS  go_function copper ion binding|GO:0005507|7565594|ISS  product MT1C; copper ion binding  note MT1C; FUNCTIONS IN: copper ion binding; INVOLVED IN: response to copper ion; LOCATED IN: cytosolic ribosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 408 Blast hits to 337 proteins in 108 species: Archae - 0; Bacteria - 4; Metazoa - 90; Fungi - 14; Plants - 224; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT1G07610.1p  transcript_id AT1G07610.1  protein_id AT1G07610.1p  transcript_id AT1G07610.1  
At1g07615	chr1:002344063	0.0	C/2344063-2344200,2343855-2343963,2343610-2343692,2343459-2343521,2342277-2343365	AT1G07615.1  CDS  go_component intracellular|GO:0005622||IEA  go_function GTP binding|GO:0005525||IEA  product GTP binding  note GTP binding; FUNCTIONS IN: GTP binding; LOCATED IN: intracellular; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG subdomain (InterPro:IPR006169), GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917), GTP-binding protein Obg/CgtA (InterPro:IPR014100); BEST Arabidopsis thaliana protein match is: GTP1/OBG family protein (TAIR:AT5G18570.1); Has 17848 Blast hits to 14272 proteins in 1576 species: Archae - 415; Bacteria - 9173; Metazoa - 754; Fungi - 485; Plants - 205; Viruses - 2; Other Eukaryotes - 6814 (source: NCBI BLink).  protein_id AT1G07615.1p  transcript_id AT1G07615.1  protein_id AT1G07615.1p  transcript_id AT1G07615.1  
At1g07620	chr1:002346245	0.0	C/2346245-2346374,2345146-2346162,2344556-2345067	AT1G07620.1  CDS  gene_syn F24B9.32, F24B9_32  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: GTP-binding protein Obg/CgtA (InterPro:IPR014100); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G02390.1); Has 447 Blast hits to 405 proteins in 72 species: Archae - 0; Bacteria - 6; Metazoa - 43; Fungi - 29; Plants - 122; Viruses - 3; Other Eukaryotes - 244 (source: NCBI BLink).  protein_id AT1G07620.1p  transcript_id AT1G07620.1  protein_id AT1G07620.1p  transcript_id AT1G07620.1  
At1g07630	chr1:002349189	0.0	W/2349189-2350682,2350772-2350885,2350973-2351237,2351322-2351437	AT1G07630.1  CDS  gene_syn F24B9.31, F24B9_31, PLL5, POL-LIKE 5  gene PLL5  function Encodes a protein phosphatase 2C like gene, similar to POL. Involved in leaf development. Knockout mutants have abnormally shaped leaves.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_process leaf development|GO:0048366|16112663|IMP  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PLL5; catalytic/ protein serine/threonine phosphatase  note PLL5; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: N-terminal protein myristoylation, leaf development; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: PLL4 (POLTERGEIST LIKE 4); catalytic/ protein serine/threonine phosphatase (TAIR:AT2G28890.1); Has 1836 Blast hits to 1817 proteins in 190 species: Archae - 0; Bacteria - 10; Metazoa - 415; Fungi - 149; Plants - 948; Viruses - 0; Other Eukaryotes - 314 (source: NCBI BLink).  protein_id AT1G07630.1p  transcript_id AT1G07630.1  protein_id AT1G07630.1p  transcript_id AT1G07630.1  
At1g07640	chr1:002354707	0.0	C/2354707-2355534	AT1G07640.1  CDS  gene_syn F24B9.30, F24B9_30, OBP2, ZINC FINGER PROTEIN OBP2  gene OBP2  function A member of the DOF transcription factors. Prominently expressed in the phloem of leaves and other organs. Expression is induced by wounding, MeJA and insect feeding. Upregulates glucosinolate biosynthesis.  go_component nucleus|GO:0005634|16581911|IDA  go_process response to wounding|GO:0009611|16740150|IEP  go_process response to insect|GO:0009625|16740150|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16740150|IEP  go_process glucosinolate biosynthetic process|GO:0019761|16740150|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product OBP2; DNA binding / transcription factor  note OBP2; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to jasmonic acid stimulus, glucosinolate biosynthetic process, response to wounding, regulation of transcription, response to insect; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT2G28810.1); Has 1152 Blast hits to 1070 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 51; Fungi - 11; Plants - 617; Viruses - 0; Other Eukaryotes - 473 (source: NCBI BLink).  protein_id AT1G07640.1p  transcript_id AT1G07640.1  protein_id AT1G07640.1p  transcript_id AT1G07640.1  
At1g07640	chr1:002355796	0.0	C/2355796-2355798,2354707-2355699	AT1G07640.2  CDS  gene_syn F24B9.30, F24B9_30, OBP2, ZINC FINGER PROTEIN OBP2  gene OBP2  function A member of the DOF transcription factors. Prominently expressed in the phloem of leaves and other organs. Expression is induced by wounding, MeJA and insect feeding. Upregulates glucosinolate biosynthesis.  go_component nucleus|GO:0005634|16581911|IDA  go_process response to wounding|GO:0009611|16740150|IEP  go_process response to insect|GO:0009625|16740150|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16740150|IEP  go_process glucosinolate biosynthetic process|GO:0019761|16740150|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product OBP2; DNA binding / transcription factor  note OBP2; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to jasmonic acid stimulus, glucosinolate biosynthetic process, response to wounding, regulation of transcription, response to insect; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT2G28810.1); Has 1173 Blast hits to 1089 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 58; Fungi - 16; Plants - 617; Viruses - 0; Other Eukaryotes - 482 (source: NCBI BLink).  protein_id AT1G07640.2p  transcript_id AT1G07640.2  protein_id AT1G07640.2p  transcript_id AT1G07640.2  
At1g07640	chr1:002355986	0.0	C/2355986-2356012,2354707-2355699	AT1G07640.3  CDS  gene_syn F24B9.30, F24B9_30, OBP2, ZINC FINGER PROTEIN OBP2  gene OBP2  function A member of the DOF transcription factors. Prominently expressed in the phloem of leaves and other organs. Expression is induced by wounding, MeJA and insect feeding. Upregulates glucosinolate biosynthesis.  go_component nucleus|GO:0005634|16581911|IDA  go_process response to wounding|GO:0009611|16740150|IEP  go_process response to insect|GO:0009625|16740150|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16740150|IEP  go_process glucosinolate biosynthetic process|GO:0019761|16740150|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product OBP2; DNA binding / transcription factor  note OBP2; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to jasmonic acid stimulus, glucosinolate biosynthetic process, response to wounding, regulation of transcription, response to insect; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT2G28810.1); Has 1178 Blast hits to 1099 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 59; Fungi - 16; Plants - 619; Viruses - 0; Other Eukaryotes - 484 (source: NCBI BLink).  protein_id AT1G07640.3p  transcript_id AT1G07640.3  protein_id AT1G07640.3p  transcript_id AT1G07640.3  
At1g07650	chr1:002366321	0.0	C/2366321-2366423,2366005-2366185,2364620-2364691,2364454-2364522,2364296-2364367,2364093-2364164,2363858-2363929,2363691-2363762,2363541-2363612,2363365-2363436,2363214-2363285,2363039-2363110,2362905-2362970,2362752-2362820,2362630-2362665,2362415-2362473,2361904-2362298,2361617-2361812,2361382-2361522,2361161-2361279,2360841-2361051,2360512-2360752,2360270-2360420,2359817-2360176	AT1G07650.1  CDS  gene_syn F24B9.29, F24B9_29  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / protein kinase family protein (TAIR:AT1G53430.1); Has 130529 Blast hits to 99787 proteins in 3434 species: Archae - 76; Bacteria - 9490; Metazoa - 46107; Fungi - 7763; Plants - 48132; Viruses - 454; Other Eukaryotes - 18507 (source: NCBI BLink).  protein_id AT1G07650.1p  transcript_id AT1G07650.1  protein_id AT1G07650.1p  transcript_id AT1G07650.1  
At1g07645	chr1:002368222	0.0	C/2368222-2368349,2367829-2367991,2367612-2367734	AT1G07645.1  CDS  gene_syn ATDSI-1VOC, DESSICATION-INDUCED 1VOC SUPERFAMILY PROTEIN  gene ATDSI-1VOC  go_component endomembrane system|GO:0012505||IEA  go_process response to abiotic stimulus|GO:0009628|18791196|IEP  go_function catalytic activity|GO:0003824||ISS  product ATDSI-1VOC (DESSICATION-INDUCED 1VOC SUPERFAMILY PROTEIN); catalytic  note DESSICATION-INDUCED 1VOC SUPERFAMILY PROTEIN (ATDSI-1VOC); FUNCTIONS IN: catalytic activity; INVOLVED IN: response to abiotic stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: seed; CONTAINS InterPro DOMAIN/s: Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); Has 442 Blast hits to 442 proteins in 189 species: Archae - 0; Bacteria - 413; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G07645.1p  transcript_id AT1G07645.1  protein_id AT1G07645.1p  transcript_id AT1G07645.1  
At1g07660	chr1:002369212	0.0	W/2369212-2369256,2369308-2369523	AT1G07660.2  CDS  gene_syn F24B9.25  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product histone H4  note histone H4; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125), Histone H4 (InterPro:IPR001951); BEST Arabidopsis thaliana protein match is: histone H4 (TAIR:AT5G59970.1); Has 2700 Blast hits to 2700 proteins in 356 species: Archae - 0; Bacteria - 0; Metazoa - 1566; Fungi - 277; Plants - 356; Viruses - 4; Other Eukaryotes - 497 (source: NCBI BLink).  protein_id AT1G07660.2p  transcript_id AT1G07660.2  protein_id AT1G07660.2p  transcript_id AT1G07660.2  
At1g07660	chr1:002369212	0.0	W/2369212-2369523	AT1G07660.1  CDS  gene_syn F24B9.25  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product histone H4  note histone H4; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125), Histone H4 (InterPro:IPR001951); BEST Arabidopsis thaliana protein match is: histone H4 (TAIR:AT5G59970.1); Has 2713 Blast hits to 2713 proteins in 359 species: Archae - 0; Bacteria - 0; Metazoa - 1566; Fungi - 279; Plants - 355; Viruses - 6; Other Eukaryotes - 507 (source: NCBI BLink).  protein_id AT1G07660.1p  transcript_id AT1G07660.1  protein_id AT1G07660.1p  transcript_id AT1G07660.1  
At1g07670	chr1:002372784	0.0	C/2372784-2374196,2372596-2372662,2372383-2372504,2371947-2372228,2371482-2371859,2371291-2371400,2370968-2371196,2370305-2370889	AT1G07670.1  CDS  gene_syn F24B9.24, F24B9_24  go_component plasma membrane|GO:0005886|17317660|IDA  go_process ATP biosynthetic process|GO:0006754||IEA  go_process cation transport|GO:0006812||IEA  go_process calcium ion transport|GO:0006816||IEA  go_process metabolic process|GO:0008152||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_function calcium-transporting ATPase activity|GO:0005388|12805592|ISS  go_function calcium-transporting ATPase activity|GO:0005388||ISS  product calcium-transporting ATPase  note calcium-transporting ATPase; FUNCTIONS IN: calcium-transporting ATPase activity; INVOLVED IN: cation transport, calcium ion transport, metabolic process, ATP biosynthetic process; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: guard cell, callus, cultured cell; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, calcium-transporting (InterPro:IPR005782), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068); BEST Arabidopsis thaliana protein match is: ECA1 (ER-TYPE CA2+-ATPASE 1); calcium-transporting ATPase (TAIR:AT1G07810.1); Has 28836 Blast hits to 19765 proteins in 1902 species: Archae - 663; Bacteria - 17966; Metazoa - 3771; Fungi - 1873; Plants - 1364; Viruses - 3; Other Eukaryotes - 3196 (source: NCBI BLink).  protein_id AT1G07670.1p  transcript_id AT1G07670.1  protein_id AT1G07670.1p  transcript_id AT1G07670.1  
At1g07680	chr1:002376062	0.0	W/2376062-2376131,2376268-2376543,2376881-2376993	AT1G07680.1  CDS  gene_syn F24B9.23, F24B9_23  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23903.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G07680.1p  transcript_id AT1G07680.1  protein_id AT1G07680.1p  transcript_id AT1G07680.1  
At1g07690	chr1:002378076	0.0	W/2378076-2378170,2378267-2378421,2378543-2378587,2378678-2378854,2378933-2379000	AT1G07690.1  CDS  gene_syn F24B9.22, F24B9_22  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54950.1); Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 1; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G07690.1p  transcript_id AT1G07690.1  protein_id AT1G07690.1p  transcript_id AT1G07690.1  
At1g07700	chr1:002380214	0.0	W/2380214-2380231,2380354-2380782,2380871-2380924,2381014-2381127	AT1G07700.1  CDS  gene_syn F24B9.21, F24B9_21  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process cell redox homeostasis|GO:0045454||IEA  product thioredoxin family protein  note thioredoxin family protein; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATTRX4; oxidoreductase, acting on sulfur group of donors, disulfide as acceptor (TAIR:AT1G19730.1); Has 1443 Blast hits to 1443 proteins in 284 species: Archae - 5; Bacteria - 129; Metazoa - 456; Fungi - 206; Plants - 380; Viruses - 3; Other Eukaryotes - 264 (source: NCBI BLink).  protein_id AT1G07700.1p  transcript_id AT1G07700.1  protein_id AT1G07700.1p  transcript_id AT1G07700.1  
At1g07700	chr1:002380214	0.0	W/2380214-2380231,2380354-2380782,2380871-2380939	AT1G07700.2  CDS  gene_syn F24B9.21, F24B9_21  go_component chloroplast|GO:0009507|18431481|IDA  go_process cell redox homeostasis|GO:0045454||IEA  product thioredoxin family protein  note thioredoxin family protein; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like fold (InterPro:IPR012336); Has 163 Blast hits to 163 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 9; Plants - 86; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT1G07700.2p  transcript_id AT1G07700.2  protein_id AT1G07700.2p  transcript_id AT1G07700.2  
At1g07700	chr1:002380297	0.0	W/2380297-2380782,2380871-2380924,2381014-2381127	AT1G07700.3  CDS  gene_syn F24B9.21, F24B9_21  go_component chloroplast|GO:0009507|18431481|IDA  go_process cell redox homeostasis|GO:0045454||IEA  product thioredoxin family protein  note thioredoxin family protein; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATTRX4; oxidoreductase, acting on sulfur group of donors, disulfide as acceptor (TAIR:AT1G19730.1); Has 1443 Blast hits to 1443 proteins in 284 species: Archae - 5; Bacteria - 129; Metazoa - 456; Fungi - 206; Plants - 380; Viruses - 3; Other Eukaryotes - 264 (source: NCBI BLink).  protein_id AT1G07700.3p  transcript_id AT1G07700.3  protein_id AT1G07700.3p  transcript_id AT1G07700.3  
At1g07705	chr1:002382090	0.0	W/2382090-2382107,2382223-2382331,2382404-2382582,2382682-2382730,2382840-2383049,2383347-2383553,2383642-2383743,2384126-2384214,2384313-2384465,2384572-2384997,2385107-2385159,2385237-2385278,2385570-2385708,2385788-2385856	AT1G07705.2  CDS  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription regulator activity|GO:0030528||IEA  go_function transcription regulator activity|GO:0030528||ISS  product transcription regulator  note transcription regulator; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NOT2/NOT3/NOT5 (InterPro:IPR007282); BEST Arabidopsis thaliana protein match is: VIP2 (VIRE2 INTERACTING PROTEIN2); protein binding / transcription regulator (TAIR:AT5G59710.1); Has 2774 Blast hits to 2106 proteins in 307 species: Archae - 0; Bacteria - 642; Metazoa - 845; Fungi - 346; Plants - 142; Viruses - 8; Other Eukaryotes - 791 (source: NCBI BLink).  protein_id AT1G07705.2p  transcript_id AT1G07705.2  protein_id AT1G07705.2p  transcript_id AT1G07705.2  
At1g07705	chr1:002382090	0.0	W/2382090-2382107,2382223-2382331,2382404-2382582,2382682-2382730,2382840-2383049,2383347-2383553,2383642-2383743,2384126-2384214,2384313-2384465,2384572-2384997,2385107-2385159,2385237-2385282	AT1G07705.1  CDS  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription regulator activity|GO:0030528||IEA  go_function transcription regulator activity|GO:0030528||ISS  product transcription regulator  note transcription regulator; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NOT2/NOT3/NOT5 (InterPro:IPR007282); BEST Arabidopsis thaliana protein match is: VIP2 (VIRE2 INTERACTING PROTEIN2); protein binding / transcription regulator (TAIR:AT5G59710.1); Has 2435 Blast hits to 1803 proteins in 294 species: Archae - 0; Bacteria - 644; Metazoa - 707; Fungi - 271; Plants - 116; Viruses - 8; Other Eukaryotes - 689 (source: NCBI BLink).  protein_id AT1G07705.1p  transcript_id AT1G07705.1  protein_id AT1G07705.1p  transcript_id AT1G07705.1  
At1g07702	chr1:002382251	0.0	C/2382251-2382331	AT1G07702.1  snoRNA  gene_syn 51805.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT1G07702.1  
At1g07710	chr1:002387644	0.0	C/2387644-2387986,2386275-2387563	AT1G07710.1  CDS  gene_syn F24B9.19, F24B9_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT5G60070.1); Has 56680 Blast hits to 23778 proteins in 814 species: Archae - 43; Bacteria - 4322; Metazoa - 27756; Fungi - 4878; Plants - 3044; Viruses - 586; Other Eukaryotes - 16051 (source: NCBI BLink).  protein_id AT1G07710.1p  transcript_id AT1G07710.1  protein_id AT1G07710.1p  transcript_id AT1G07710.1  
At1g07720	chr1:002390970	0.0	C/2390970-2392406	AT1G07720.1  CDS  gene_syn 3-KETOACYL-COA SYNTHASE 3, F24B9.18, F24B9_18, KCS3  gene KCS3  function Encodes KCS3, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).  go_function catalytic activity|GO:0003824||IEA  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component endoplasmic reticulum|GO:0005783|18465198|IDA  go_process response to osmotic stress|GO:0006970|18465198|IEP  go_process response to cold|GO:0009409|18465198|IEP  go_process response to light stimulus|GO:0009416|18465198|IEP  go_function acyltransferase activity|GO:0008415||ISS  product KCS3 (3-KETOACYL-COA SYNTHASE 3); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups  note 3-KETOACYL-COA SYNTHASE 3 (KCS3); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: response to light stimulus, response to cold, response to osmotic stress; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: KCS12 (3-KETOACYL-COA SYNTHASE 12); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups (TAIR:AT2G28630.1); Has 1754 Blast hits to 1731 proteins in 457 species: Archae - 0; Bacteria - 757; Metazoa - 0; Fungi - 2; Plants - 850; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink).  protein_id AT1G07720.1p  transcript_id AT1G07720.1  protein_id AT1G07720.1p  transcript_id AT1G07720.1  
At1g07725	chr1:002395249	0.0	C/2395249-2397096	AT1G07725.1  CDS  gene_syn ATEXO70H6, exocyst subunit EXO70 family protein H6  gene ATEXO70H6  function A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.  go_component exocyst|GO:0000145||IEA  go_process exocytosis|GO:0006887||IEA  go_component exocyst|GO:0000145||ISS  go_process vesicle docking during exocytosis|GO:0006904||ISS  go_function protein binding|GO:0005515||ISS  product ATEXO70H6 (exocyst subunit EXO70 family protein H6); protein binding  note exocyst subunit EXO70 family protein H6 (ATEXO70H6); FUNCTIONS IN: protein binding; INVOLVED IN: exocytosis, vesicle docking during exocytosis; LOCATED IN: exocyst; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: ATEXO70H5 (exocyst subunit EXO70 family protein H5); protein binding (TAIR:AT2G28640.1); Has 533 Blast hits to 531 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 37; Plants - 373; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G07725.1p  transcript_id AT1G07725.1  protein_id AT1G07725.1p  transcript_id AT1G07725.1  
At1g07728	chr1:002395451	0.0	W/2395451-2397341	AT1G07728.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G07725  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G07728.2  
At1g07728	chr1:002395461	0.0	W/2395461-2397345	AT1G07728.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G07725  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G07728.1  
At1g07730	chr1:002397527	0.0	C/2397527-2398696	AT1G07730.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product disease resistance-responsive family protein  note disease resistance-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: disease resistance-responsive family protein / fibroin-related (TAIR:AT2G28670.1); Has 11492 Blast hits to 5717 proteins in 611 species: Archae - 16; Bacteria - 4392; Metazoa - 2575; Fungi - 900; Plants - 782; Viruses - 53; Other Eukaryotes - 2774 (source: NCBI BLink).  protein_id AT1G07730.2p  transcript_id AT1G07730.2  protein_id AT1G07730.2p  transcript_id AT1G07730.2  
At1g07740	chr1:002399117	0.0	C/2399117-2400496	AT1G07740.1  CDS  gene_syn AT1G07730, F24B9.15, F24B9_15  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G16420.1); Has 17393 Blast hits to 5340 proteins in 166 species: Archae - 2; Bacteria - 16; Metazoa - 507; Fungi - 290; Plants - 15901; Viruses - 0; Other Eukaryotes - 677 (source: NCBI BLink).  protein_id AT1G07740.1p  transcript_id AT1G07740.1  protein_id AT1G07740.1p  transcript_id AT1G07740.1  
At1g07745	chr1:002402379	0.0	C/2402379-2402492,2402081-2402278,2401737-2401871,2401544-2401636,2401356-2401446,2401188-2401258,2400948-2401103,2400797-2400853	AT1G07745.2  CDS  gene_syn ARABIDOPSIS HOMOLOG OF RAD51 D, ATRAD51D, F24B9.14, F24B9_14, RAD51D, SSN1, SUPPRESOR OF SNI1  gene RAD51D  function Is a suppressor of SNI1. Encodes a member of the RecA/RAD51 family of DNA recombination and repair proteins. Both RAD51 and SNI1 have a dual role in pathogen-related gene transcription and somatic homologous recombination.  go_component endomembrane system|GO:0012505||IEA  go_function DNA binding|GO:0003677||IEA  go_function ATP binding|GO:0005524||IEA  go_function DNA-dependent ATPase activity|GO:0008094||IEA  go_process regulation of response to biotic stimulus|GO:0002831|17360504|IMP  go_process DNA repair|GO:0006281|17360504|IMP  go_process DNA repair|GO:0006281||ISS  go_process somatic cell DNA recombination|GO:0016444|17360504|IMP  go_function DNA binding|GO:0003677||ISS  product RAD51D (ARABIDOPSIS HOMOLOG OF RAD51 D); ATP binding / DNA binding / DNA-dependent ATPase  note ARABIDOPSIS HOMOLOG OF RAD51 D (RAD51D); FUNCTIONS IN: DNA-dependent ATPase activity, DNA binding, ATP binding; INVOLVED IN: DNA repair, somatic cell DNA recombination, regulation of response to biotic stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, male gametophyte, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RecA bacterial DNA recombination (InterPro:IPR001553); BEST Arabidopsis thaliana protein match is: RAD51B; recombinase (TAIR:AT2G28560.2); Has 2886 Blast hits to 2886 proteins in 796 species: Archae - 315; Bacteria - 876; Metazoa - 634; Fungi - 300; Plants - 284; Viruses - 2; Other Eukaryotes - 475 (source: NCBI BLink).  protein_id AT1G07745.2p  transcript_id AT1G07745.2  protein_id AT1G07745.2p  transcript_id AT1G07745.2  
At1g07745	chr1:002402755	0.0	C/2402755-2402842,2402379-2402458,2402081-2402278,2401737-2401871,2401544-2401636,2401356-2401446,2401188-2401258,2400948-2401103,2400797-2400853	AT1G07745.1  CDS  gene_syn ARABIDOPSIS HOMOLOG OF RAD51 D, ATRAD51D, F24B9.14, F24B9_14, RAD51D, SSN1, SUPPRESOR OF SNI1  gene RAD51D  function Is a suppressor of SNI1. Encodes a member of the RecA/RAD51 family of DNA recombination and repair proteins. Both RAD51 and SNI1 have a dual role in pathogen-related gene transcription and somatic homologous recombination.  go_function DNA binding|GO:0003677||IEA  go_function ATP binding|GO:0005524||IEA  go_function DNA-dependent ATPase activity|GO:0008094||IEA  go_process regulation of response to biotic stimulus|GO:0002831|17360504|IMP  go_process DNA repair|GO:0006281|17360504|IMP  go_process DNA repair|GO:0006281||ISS  go_process somatic cell DNA recombination|GO:0016444|17360504|IMP  go_function DNA binding|GO:0003677||ISS  product RAD51D (ARABIDOPSIS HOMOLOG OF RAD51 D); ATP binding / DNA binding / DNA-dependent ATPase  note ARABIDOPSIS HOMOLOG OF RAD51 D (RAD51D); FUNCTIONS IN: DNA-dependent ATPase activity, DNA binding, ATP binding; INVOLVED IN: DNA repair, somatic cell DNA recombination, regulation of response to biotic stimulus; EXPRESSED IN: sperm cell, male gametophyte, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RecA bacterial DNA recombination (InterPro:IPR001553); BEST Arabidopsis thaliana protein match is: RAD51B; recombinase (TAIR:AT2G28560.2); Has 2891 Blast hits to 2891 proteins in 796 species: Archae - 315; Bacteria - 876; Metazoa - 634; Fungi - 300; Plants - 290; Viruses - 2; Other Eukaryotes - 474 (source: NCBI BLink).  protein_id AT1G07745.1p  transcript_id AT1G07745.1  protein_id AT1G07745.1p  transcript_id AT1G07745.1  
At1g07747	chr1:002403558	0.0	W/2403558-2403845	AT1G07747.1  CDS  function Encodes a Protease inhibitor/seed storage/LTP family protein  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  product unknown protein  note INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT1G43667.1); Has 199 Blast hits to 196 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 199; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G07747.1p  transcript_id AT1G07747.1  protein_id AT1G07747.1p  transcript_id AT1G07747.1  
At1g07750	chr1:002405668	0.0	C/2405668-2405863,2404542-2405262,2404300-2404453	AT1G07750.1  CDS  gene_syn F24B9.13, F24B9_13  go_function nutrient reservoir activity|GO:0045735||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nutrient reservoir activity|GO:0045735||ISS  product cupin family protein  note cupin family protein; FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), 11-S plant seed storage protein (InterPro:IPR006044); BEST Arabidopsis thaliana protein match is: cupin family protein (TAIR:AT2G28680.1); Has 689 Blast hits to 606 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 685; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G07750.1p  transcript_id AT1G07750.1  protein_id AT1G07750.1p  transcript_id AT1G07750.1  
At1g07760	chr1:002406834	0.0	C/2406834-2406905	AT1G07760.1  tRNA  gene_syn 51805.TRNA-HIS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-His (anticodon: GTG)  transcript_id AT1G07760.1  
At1g07770	chr1:002408933	0.0	C/2408933-2409065,2408681-2408841,2408413-2408511	AT1G07770.1  CDS  gene_syn CYTOPLASMIC RIBOSOMAL PROTEIN S15A, F24B9.12, F24B9_12, RPS15A, ribosomal protein s15a  gene RPS15A  function Encodes cytoplasmic ribosomal protein S15a.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component mitochondrion|GO:0005739|11971146|IDA  go_component cytosolic ribosome|GO:0022626|7972526|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product RPS15A (ribosomal protein s15a); structural constituent of ribosome  note ribosomal protein s15a (RPS15A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8 (InterPro:IPR000630); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S15A (RPS15aF) (TAIR:AT5G59850.1); Has 2184 Blast hits to 2184 proteins in 755 species: Archae - 184; Bacteria - 923; Metazoa - 327; Fungi - 129; Plants - 161; Viruses - 0; Other Eukaryotes - 460 (source: NCBI BLink).  protein_id AT1G07770.1p  transcript_id AT1G07770.1  protein_id AT1G07770.1p  transcript_id AT1G07770.1  
At1g07770	chr1:002408933	0.0	C/2408933-2409065,2408681-2408841,2408413-2408511	AT1G07770.2  CDS  gene_syn CYTOPLASMIC RIBOSOMAL PROTEIN S15A, F24B9.12, F24B9_12, RPS15A, ribosomal protein s15a  gene RPS15A  function Encodes cytoplasmic ribosomal protein S15a.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component mitochondrion|GO:0005739|11971146|IDA  go_component cytosolic ribosome|GO:0022626|7972526|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product RPS15A (ribosomal protein s15a); structural constituent of ribosome  note ribosomal protein s15a (RPS15A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8 (InterPro:IPR000630); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S15A (RPS15aF) (TAIR:AT5G59850.1); Has 2184 Blast hits to 2184 proteins in 755 species: Archae - 184; Bacteria - 923; Metazoa - 327; Fungi - 129; Plants - 161; Viruses - 0; Other Eukaryotes - 460 (source: NCBI BLink).  protein_id AT1G07770.2p  transcript_id AT1G07770.2  protein_id AT1G07770.2p  transcript_id AT1G07770.2  
At1g07780	chr1:002411824	0.0	C/2411824-2411833,2411479-2411541,2410987-2411351,2410733-2410896,2410352-2410577	AT1G07780.1  CDS  gene_syn F24B9.11, F24B9_11, PAI1, PHOSPHORIBOSYLANTHRANILATE ISOMERASE, PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1, TRANSIENT RECEPTOR POTENTIAL 6, TRP6  gene PAI1  function Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family.  go_component chloroplast|GO:0009507|7890741|IDA  go_process tryptophan biosynthetic process|GO:0000162|7773017|TAS  go_process tryptophan biosynthetic process|GO:0000162|8521489|IMP  go_function phosphoribosylanthranilate isomerase activity|GO:0004640|7773017|IGI  go_function phosphoribosylanthranilate isomerase activity|GO:0004640|7773017|IMP  product PAI1 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1); phosphoribosylanthranilate isomerase  note PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1 (PAI1); FUNCTIONS IN: phosphoribosylanthranilate isomerase activity; INVOLVED IN: tryptophan biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: N-(5'phosphoribosyl)anthranilate isomerase (PRAI) (InterPro:IPR001240), Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: PAI2 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 2); phosphoribosylanthranilate isomerase (TAIR:AT5G05590.1); Has 3611 Blast hits to 3610 proteins in 1215 species: Archae - 121; Bacteria - 2122; Metazoa - 4; Fungi - 188; Plants - 51; Viruses - 0; Other Eukaryotes - 1125 (source: NCBI BLink).  protein_id AT1G07780.1p  transcript_id AT1G07780.1  protein_id AT1G07780.1p  transcript_id AT1G07780.1  
At1g07780	chr1:002411824	0.0	C/2411824-2411833,2411479-2411541,2410987-2411351,2410733-2410896,2410352-2410577	AT1G07780.2  CDS  gene_syn F24B9.11, F24B9_11, PAI1, PHOSPHORIBOSYLANTHRANILATE ISOMERASE, PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1, TRANSIENT RECEPTOR POTENTIAL 6, TRP6  gene PAI1  function Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family.  go_component chloroplast|GO:0009507|7890741|IDA  go_process tryptophan biosynthetic process|GO:0000162|7773017|TAS  go_process tryptophan biosynthetic process|GO:0000162|8521489|IMP  go_function phosphoribosylanthranilate isomerase activity|GO:0004640|7773017|IGI  go_function phosphoribosylanthranilate isomerase activity|GO:0004640|7773017|IMP  product PAI1 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1); phosphoribosylanthranilate isomerase  note PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1 (PAI1); FUNCTIONS IN: phosphoribosylanthranilate isomerase activity; INVOLVED IN: tryptophan biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: N-(5'phosphoribosyl)anthranilate isomerase (PRAI) (InterPro:IPR001240), Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: PAI2 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 2); phosphoribosylanthranilate isomerase (TAIR:AT5G05590.1); Has 3611 Blast hits to 3610 proteins in 1215 species: Archae - 121; Bacteria - 2122; Metazoa - 4; Fungi - 188; Plants - 51; Viruses - 0; Other Eukaryotes - 1125 (source: NCBI BLink).  protein_id AT1G07780.2p  transcript_id AT1G07780.2  protein_id AT1G07780.2p  transcript_id AT1G07780.2  
At1g07780	chr1:002411824	0.0	C/2411824-2411833,2411479-2411541,2410987-2411351,2410733-2410896,2410352-2410577	AT1G07780.3  CDS  gene_syn F24B9.11, F24B9_11, PAI1, PHOSPHORIBOSYLANTHRANILATE ISOMERASE, PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1, TRANSIENT RECEPTOR POTENTIAL 6, TRP6  gene PAI1  function Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family.  go_component chloroplast|GO:0009507|7890741|IDA  go_process tryptophan biosynthetic process|GO:0000162|7773017|TAS  go_process tryptophan biosynthetic process|GO:0000162|8521489|IMP  go_function phosphoribosylanthranilate isomerase activity|GO:0004640|7773017|IGI  go_function phosphoribosylanthranilate isomerase activity|GO:0004640|7773017|IMP  product PAI1 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1); phosphoribosylanthranilate isomerase  note PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1 (PAI1); FUNCTIONS IN: phosphoribosylanthranilate isomerase activity; INVOLVED IN: tryptophan biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: N-(5'phosphoribosyl)anthranilate isomerase (PRAI) (InterPro:IPR001240), Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: PAI2 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 2); phosphoribosylanthranilate isomerase (TAIR:AT5G05590.1); Has 3611 Blast hits to 3610 proteins in 1215 species: Archae - 121; Bacteria - 2122; Metazoa - 4; Fungi - 188; Plants - 51; Viruses - 0; Other Eukaryotes - 1125 (source: NCBI BLink).  protein_id AT1G07780.3p  transcript_id AT1G07780.3  protein_id AT1G07780.3p  transcript_id AT1G07780.3  
At1g07780	chr1:002411824	0.0	C/2411824-2411833,2411479-2411541,2410987-2411351,2410733-2410896,2410563-2410602	AT1G07780.4  CDS  gene_syn F24B9.11, F24B9_11, PAI1, PHOSPHORIBOSYLANTHRANILATE ISOMERASE, PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1, TRANSIENT RECEPTOR POTENTIAL 6, TRP6  gene PAI1  function Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family.  go_component chloroplast|GO:0009507|7890741|IDA  go_process tryptophan biosynthetic process|GO:0000162|7773017|TAS  go_process tryptophan biosynthetic process|GO:0000162|8521489|IMP  go_function phosphoribosylanthranilate isomerase activity|GO:0004640|7773017|IGI  go_function phosphoribosylanthranilate isomerase activity|GO:0004640|7773017|IMP  product PAI1 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1); phosphoribosylanthranilate isomerase  note PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1 (PAI1); FUNCTIONS IN: phosphoribosylanthranilate isomerase activity; INVOLVED IN: tryptophan biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: N-(5'phosphoribosyl)anthranilate isomerase (PRAI) (InterPro:IPR001240), Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: PAI2 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 2); phosphoribosylanthranilate isomerase (TAIR:AT5G05590.1); Has 2504 Blast hits to 2504 proteins in 948 species: Archae - 19; Bacteria - 1662; Metazoa - 2; Fungi - 180; Plants - 51; Viruses - 0; Other Eukaryotes - 590 (source: NCBI BLink).  protein_id AT1G07780.4p  transcript_id AT1G07780.4  protein_id AT1G07780.4p  transcript_id AT1G07780.4  
At1g07790	chr1:002413049	0.0	W/2413049-2413495	AT1G07790.1  CDS  gene_syn F24B9.10, F24B9_10, HTB1  gene HTB1  function Encodes a histone 2B (H2B) protein.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product HTB1; DNA binding  note HTB1; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: HTB2; DNA binding (TAIR:AT5G22880.1); Has 2813 Blast hits to 2789 proteins in 302 species: Archae - 0; Bacteria - 49; Metazoa - 1862; Fungi - 169; Plants - 367; Viruses - 0; Other Eukaryotes - 366 (source: NCBI BLink).  protein_id AT1G07790.1p  transcript_id AT1G07790.1  protein_id AT1G07790.1p  transcript_id AT1G07790.1  
At1g07795	chr1:002414438	0.0	W/2414438-2414794	AT1G07795.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28725.1); Has 24 Blast hits to 24 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G07795.1p  transcript_id AT1G07795.1  protein_id AT1G07795.1p  transcript_id AT1G07795.1  
At1g07800	chr1:002415041	0.0	W/2415041-2415970	AT1G07800.1  mRNA_TE_gene  pseudo  gene_syn F24B9.35  note Transposable element gene, pseudogene, similar to putative reverse transcriptase., blastp match of 24% identity and 5.3e-10 P-value to GP|21450442|gb|AAM54146.1|AC104616_5|AC104616 putative reverse transcriptase. {Oryza sativa (japonica cultivar-group)}  
At1g07810	chr1:002416681	0.0	W/2416681-2418093,2418215-2418281,2418374-2418495,2418647-2418928,2419010-2419387,2419467-2419576,2419677-2419905,2419988-2420572	AT1G07810.1  CDS  gene_syn ACA3, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 1, ATECA1, ECA1, ER-TYPE CA2+-ATPASE, ER-TYPE CA2+-ATPASE 1, F24B9.9, F24B9_9  gene ECA1  function Encodes an ER-type Ca2+-pumping ATPase.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum|GO:0005783|9238019|IDA  go_component endoplasmic reticulum membrane|GO:0005789|9238019|IDA  go_process calcium ion transport|GO:0006816|9238019|IGI  go_process manganese ion transport|GO:0006828|9238019|IGI  go_process response to manganese ion|GO:0010042|12226493|IMP  go_process response to manganese ion|GO:0010042|9238019|IMP  go_process cellular manganese ion homeostasis|GO:0030026|9238019|IGI  go_function calcium-transporting ATPase activity|GO:0005388|12805592|ISS  go_function calcium-transporting ATPase activity|GO:0005388|9238019|IDA  go_function calcium-transporting ATPase activity|GO:0005388|9238019|IGI  go_function calcium-transporting ATPase activity|GO:0005388||ISS  product ECA1 (ER-TYPE CA2+-ATPASE 1); calcium-transporting ATPase  note ER-TYPE CA2+-ATPASE 1 (ECA1); FUNCTIONS IN: calcium-transporting ATPase activity; INVOLVED IN: manganese ion transport, response to cadmium ion, cellular manganese ion homeostasis, calcium ion transport, response to manganese ion; LOCATED IN: endoplasmic reticulum, plasma membrane, endoplasmic reticulum membrane; EXPRESSED IN: guard cell, callus, cultured cell; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, calcium-transporting (InterPro:IPR005782), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068); BEST Arabidopsis thaliana protein match is: calcium-transporting ATPase (TAIR:AT1G07670.1); Has 28946 Blast hits to 19769 proteins in 1905 species: Archae - 653; Bacteria - 18050; Metazoa - 3790; Fungi - 1882; Plants - 1359; Viruses - 3; Other Eukaryotes - 3209 (source: NCBI BLink).  protein_id AT1G07810.1p  transcript_id AT1G07810.1  protein_id AT1G07810.1p  transcript_id AT1G07810.1  
At1g07820	chr1:002421435	0.0	C/2421435-2421746	AT1G07820.1  CDS  gene_syn F24B9.8  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product histone H4  note histone H4; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125), Histone H4 (InterPro:IPR001951); BEST Arabidopsis thaliana protein match is: histone H4 (TAIR:AT5G59970.1); Has 2713 Blast hits to 2713 proteins in 359 species: Archae - 0; Bacteria - 0; Metazoa - 1566; Fungi - 279; Plants - 355; Viruses - 6; Other Eukaryotes - 507 (source: NCBI BLink).  protein_id AT1G07820.1p  transcript_id AT1G07820.1  protein_id AT1G07820.1p  transcript_id AT1G07820.1  
At1g07820	chr1:002421435	0.0	C/2421435-2421746	AT1G07820.2  CDS  gene_syn F24B9.8  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product histone H4  note histone H4; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125), Histone H4 (InterPro:IPR001951); BEST Arabidopsis thaliana protein match is: histone H4 (TAIR:AT5G59970.1); Has 2713 Blast hits to 2713 proteins in 359 species: Archae - 0; Bacteria - 0; Metazoa - 1566; Fungi - 279; Plants - 355; Viruses - 6; Other Eukaryotes - 507 (source: NCBI BLink).  protein_id AT1G07820.2p  transcript_id AT1G07820.2  protein_id AT1G07820.2p  transcript_id AT1G07820.2  
At1g07830	chr1:002422549	0.0	W/2422549-2422717,2422949-2423106,2423285-2423392	AT1G07830.1  CDS  gene_syn F24B9.7, F24B9_7  go_component intracellular|GO:0005622||IEA  go_component mitochondrion|GO:0005739||IEA  go_component mitochondrial ribosome|GO:0005761||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L29 family protein  note ribosomal protein L29 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: mitochondrion, ribosome, mitochondrial ribosome, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L47, mitochondrial (InterPro:IPR010729), Ribosomal protein L29 (InterPro:IPR001854); Has 236 Blast hits to 236 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 93; Fungi - 80; Plants - 22; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT1G07830.1p  transcript_id AT1G07830.1  protein_id AT1G07830.1p  transcript_id AT1G07830.1  
At1g07840	chr1:002424603	0.0	W/2424603-2424646,2424839-2424926,2425169-2425348,2425432-2425611,2425695-2425862,2425952-2426103,2426192-2426306,2426414-2426425	AT1G07840.1  CDS  gene_syn F24B9.6, F24B9_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product leucine zipper factor-related  note leucine zipper factor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Sas10/Utp3/C1D (InterPro:IPR007146); BEST Arabidopsis thaliana protein match is: EMB2777 (EMBRYO DEFECTIVE 2777) (TAIR:AT2G43650.1); Has 529 Blast hits to 527 proteins in 149 species: Archae - 0; Bacteria - 20; Metazoa - 239; Fungi - 93; Plants - 45; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).  protein_id AT1G07840.1p  transcript_id AT1G07840.1  protein_id AT1G07840.1p  transcript_id AT1G07840.1  
At1g07840	chr1:002424603	0.0	W/2424603-2424646,2424839-2424926,2425169-2425348,2425432-2425611,2425695-2425862,2425952-2426103,2426192-2426306,2426414-2426425	AT1G07840.2  CDS  gene_syn F24B9.6, F24B9_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product leucine zipper factor-related  note leucine zipper factor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Sas10/Utp3/C1D (InterPro:IPR007146); BEST Arabidopsis thaliana protein match is: EMB2777 (EMBRYO DEFECTIVE 2777) (TAIR:AT2G43650.1); Has 529 Blast hits to 527 proteins in 149 species: Archae - 0; Bacteria - 20; Metazoa - 239; Fungi - 93; Plants - 45; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).  protein_id AT1G07840.2p  transcript_id AT1G07840.2  protein_id AT1G07840.2p  transcript_id AT1G07840.2  
At1g07840	chr1:002424603	0.0	W/2424603-2424646,2424839-2424926,2425169-2425348,2425432-2425611,2425695-2425862,2425952-2426131	AT1G07840.3  CDS  gene_syn F24B9.6, F24B9_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product leucine zipper factor-related  note leucine zipper factor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Sas10/Utp3/C1D (InterPro:IPR007146); BEST Arabidopsis thaliana protein match is: EMB2777 (EMBRYO DEFECTIVE 2777) (TAIR:AT2G43650.1); Has 425 Blast hits to 425 proteins in 142 species: Archae - 0; Bacteria - 16; Metazoa - 207; Fungi - 80; Plants - 37; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT1G07840.3p  transcript_id AT1G07840.3  protein_id AT1G07840.3p  transcript_id AT1G07840.3  
At1g07850	chr1:002426745	0.0	W/2426745-2427301,2427377-2427779,2427893-2428438,2428600-2428719	AT1G07850.1  CDS  gene_syn F24B9.5, F24B9_5  go_component chloroplast|GO:0009507||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product transferase, transferring glycosyl groups  note transferase, transferring glycosyl groups; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: leaf whorl, petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: fringe-related protein (TAIR:AT4G23490.1); Has 392 Blast hits to 388 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 173; Fungi - 84; Plants - 132; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G07850.1p  transcript_id AT1G07850.1  protein_id AT1G07850.1p  transcript_id AT1G07850.1  
At1g07860	chr1:002429266	0.0	C/2429266-2429431,2428942-2429183	AT1G07860.1  CDS  gene_syn F24B9.36, F24B9_36  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, pollen tube; EXPRESSED DURING: petal differentiation and expansion stage; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G07860.1p  transcript_id AT1G07860.1  protein_id AT1G07860.1p  transcript_id AT1G07860.1  
At1g07870	chr1:002431702	0.0	C/2431702-2431843,2431105-2431343,2430818-2431007,2430321-2430712,2429933-2430241	AT1G07870.1  CDS  gene_syn F24B9.4, F24B9_4  go_component plasma membrane|GO:0005886|17644812|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_process response to salt stress|GO:0009651|11351099|IEP  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: response to salt stress, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G28590.1); Has 82095 Blast hits to 81092 proteins in 2973 species: Archae - 50; Bacteria - 7578; Metazoa - 35765; Fungi - 6178; Plants - 18436; Viruses - 378; Other Eukaryotes - 13710 (source: NCBI BLink).  protein_id AT1G07870.1p  transcript_id AT1G07870.1  protein_id AT1G07870.1p  transcript_id AT1G07870.1  
At1g07880	chr1:002435570	0.0	C/2435570-2435712,2435359-2435488,2435152-2435289,2434706-2435059	AT1G07880.1  CDS  gene_syn ATMPK13, F24B9.3, F24B9_3  gene ATMPK13  function member of MAP Kinase  go_process signal transduction|GO:0007165|12119167|IC  go_function MAP kinase activity|GO:0004707|11544109|ISS  go_function MAP kinase activity|GO:0004707|12119167|ISS  go_function kinase activity|GO:0016301||ISS  product ATMPK13; MAP kinase/ kinase  note ATMPK13; FUNCTIONS IN: MAP kinase activity, kinase activity; INVOLVED IN: signal transduction; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATMPK5 (MAP KINASE 5); MAP kinase/ kinase (TAIR:AT4G11330.1); Has 89064 Blast hits to 88105 proteins in 3206 species: Archae - 39; Bacteria - 7213; Metazoa - 39386; Fungi - 7938; Plants - 16950; Viruses - 524; Other Eukaryotes - 17014 (source: NCBI BLink).  protein_id AT1G07880.1p  transcript_id AT1G07880.1  protein_id AT1G07880.1p  transcript_id AT1G07880.1  
At1g07880	chr1:002435570	0.0	C/2435570-2435712,2435359-2435488,2435152-2435289,2434727-2435059,2434438-2434621,2434193-2434356	AT1G07880.2  CDS  gene_syn ATMPK13, F24B9.3, F24B9_3  gene ATMPK13  function member of MAP Kinase  go_process signal transduction|GO:0007165|12119167|IC  go_function MAP kinase activity|GO:0004707|11544109|ISS  go_function MAP kinase activity|GO:0004707|12119167|ISS  go_function kinase activity|GO:0016301||ISS  product ATMPK13; MAP kinase/ kinase  note ATMPK13; FUNCTIONS IN: MAP kinase activity, kinase activity; INVOLVED IN: signal transduction; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), JNK MAP kinase (InterPro:IPR008351), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4); MAP kinase/ kinase (TAIR:AT4G01370.1); Has 89986 Blast hits to 88926 proteins in 3217 species: Archae - 43; Bacteria - 7260; Metazoa - 39765; Fungi - 8067; Plants - 17009; Viruses - 533; Other Eukaryotes - 17309 (source: NCBI BLink).  protein_id AT1G07880.2p  transcript_id AT1G07880.2  protein_id AT1G07880.2p  transcript_id AT1G07880.2  
At1g07885	chr1:002436955	0.0	C/2436955-2436959,2436678-2436768,2436467-2436493	AT1G07885.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT1G07885.1p  transcript_id AT1G07885.1  protein_id AT1G07885.1p  transcript_id AT1G07885.1  
At1g07890	chr1:002438005	0.0	W/2438005-2438123,2438211-2438385,2438491-2438556,2438709-2438843,2438935-2439014,2439088-2439190,2439278-2439336,2439420-2439435	AT1G07890.1  CDS  gene_syn APX1, ASCORBATE PEROXIDASE, ATAPX1, CS1, F24B9.2, F24B9_2, MEE6, ascorbate peroxidase 1, maternal effect embryo arrest 6  gene APX1  function Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytosol|GO:0005829|8422923|TAS  go_process response to reactive oxygen species|GO:0000302|15608336|IMP  go_process response to heat|GO:0009408|9808745|IEP  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function L-ascorbate peroxidase activity|GO:0016688|9291097|TAS  go_function L-ascorbate peroxidase activity|GO:0016688||ISS  product APX1 (ascorbate peroxidase 1); L-ascorbate peroxidase  note ascorbate peroxidase 1 (APX1); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: embryonic development ending in seed dormancy, response to reactive oxygen species, response to cadmium ion, response to salt stress, response to heat; LOCATED IN: cytosol, cell wall, chloroplast, plasma membrane, chloroplast stroma; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: APX2 (ASCORBATE PEROXIDASE 2); L-ascorbate peroxidase (TAIR:AT3G09640.2); Has 6498 Blast hits to 5997 proteins in 880 species: Archae - 46; Bacteria - 2022; Metazoa - 2; Fungi - 626; Plants - 2150; Viruses - 0; Other Eukaryotes - 1652 (source: NCBI BLink).  protein_id AT1G07890.1p  transcript_id AT1G07890.1  protein_id AT1G07890.1p  transcript_id AT1G07890.1  
At1g07890	chr1:002438005	0.0	W/2438005-2438123,2438211-2438385,2438491-2438556,2438709-2438843,2438935-2439014,2439088-2439190,2439278-2439336,2439420-2439435	AT1G07890.2  CDS  gene_syn APX1, ASCORBATE PEROXIDASE, ATAPX1, CS1, F24B9.2, F24B9_2, MEE6, ascorbate peroxidase 1, maternal effect embryo arrest 6  gene APX1  function Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytosol|GO:0005829|8422923|TAS  go_process response to reactive oxygen species|GO:0000302|15608336|IMP  go_process response to heat|GO:0009408|9808745|IEP  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function L-ascorbate peroxidase activity|GO:0016688|9291097|TAS  go_function L-ascorbate peroxidase activity|GO:0016688||ISS  product APX1 (ascorbate peroxidase 1); L-ascorbate peroxidase  note ascorbate peroxidase 1 (APX1); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: embryonic development ending in seed dormancy, response to reactive oxygen species, response to cadmium ion, response to salt stress, response to heat; LOCATED IN: cytosol, cell wall, chloroplast, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: APX2 (ASCORBATE PEROXIDASE 2); L-ascorbate peroxidase (TAIR:AT3G09640.2); Has 6498 Blast hits to 5997 proteins in 880 species: Archae - 46; Bacteria - 2022; Metazoa - 2; Fungi - 626; Plants - 2150; Viruses - 0; Other Eukaryotes - 1652 (source: NCBI BLink).  protein_id AT1G07890.2p  transcript_id AT1G07890.2  protein_id AT1G07890.2p  transcript_id AT1G07890.2  
At1g07890	chr1:002438005	0.0	W/2438005-2438123,2438211-2438385,2438491-2438556,2438709-2438843,2438935-2439014,2439088-2439190,2439278-2439336,2439420-2439435	AT1G07890.3  CDS  gene_syn APX1, ASCORBATE PEROXIDASE, ATAPX1, CS1, F24B9.2, F24B9_2, MEE6, ascorbate peroxidase 1, maternal effect embryo arrest 6  gene APX1  function Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytosol|GO:0005829|8422923|TAS  go_process response to reactive oxygen species|GO:0000302|15608336|IMP  go_process response to heat|GO:0009408|9808745|IEP  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function L-ascorbate peroxidase activity|GO:0016688|9291097|TAS  go_function L-ascorbate peroxidase activity|GO:0016688||ISS  product APX1 (ascorbate peroxidase 1); L-ascorbate peroxidase  note ascorbate peroxidase 1 (APX1); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: embryonic development ending in seed dormancy, response to reactive oxygen species, response to cadmium ion, response to salt stress, response to heat; LOCATED IN: cytosol, cell wall, chloroplast, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: APX2 (ASCORBATE PEROXIDASE 2); L-ascorbate peroxidase (TAIR:AT3G09640.2); Has 6498 Blast hits to 5997 proteins in 880 species: Archae - 46; Bacteria - 2022; Metazoa - 2; Fungi - 626; Plants - 2150; Viruses - 0; Other Eukaryotes - 1652 (source: NCBI BLink).  protein_id AT1G07890.3p  transcript_id AT1G07890.3  protein_id AT1G07890.3p  transcript_id AT1G07890.3  
At1g07890	chr1:002438005	0.0	W/2438005-2438123,2438211-2438385,2438491-2438556,2438709-2438843,2438935-2439014,2439088-2439190,2439278-2439336,2439420-2439435	AT1G07890.4  CDS  gene_syn APX1, ASCORBATE PEROXIDASE, ATAPX1, CS1, F24B9.2, F24B9_2, MEE6, ascorbate peroxidase 1, maternal effect embryo arrest 6  gene APX1  function Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytosol|GO:0005829|8422923|TAS  go_process response to reactive oxygen species|GO:0000302|15608336|IMP  go_process response to heat|GO:0009408|9808745|IEP  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function L-ascorbate peroxidase activity|GO:0016688|9291097|TAS  go_function L-ascorbate peroxidase activity|GO:0016688||ISS  product APX1 (ascorbate peroxidase 1); L-ascorbate peroxidase  note ascorbate peroxidase 1 (APX1); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: embryonic development ending in seed dormancy, response to reactive oxygen species, response to cadmium ion, response to salt stress, response to heat; LOCATED IN: cytosol, cell wall, chloroplast, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: APX2 (ASCORBATE PEROXIDASE 2); L-ascorbate peroxidase (TAIR:AT3G09640.2); Has 6498 Blast hits to 5997 proteins in 880 species: Archae - 46; Bacteria - 2022; Metazoa - 2; Fungi - 626; Plants - 2150; Viruses - 0; Other Eukaryotes - 1652 (source: NCBI BLink).  protein_id AT1G07890.4p  transcript_id AT1G07890.4  protein_id AT1G07890.4p  transcript_id AT1G07890.4  
At1g07890	chr1:002438005	0.0	W/2438005-2438123,2438211-2438385,2438491-2438556,2438709-2438843,2438935-2439014,2439088-2439190,2439278-2439336,2439420-2439435	AT1G07890.5  CDS  gene_syn APX1, ASCORBATE PEROXIDASE, ATAPX1, CS1, F24B9.2, F24B9_2, MEE6, ascorbate peroxidase 1, maternal effect embryo arrest 6  gene APX1  function Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytosol|GO:0005829|8422923|TAS  go_process response to reactive oxygen species|GO:0000302|15608336|IMP  go_process response to heat|GO:0009408|9808745|IEP  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function L-ascorbate peroxidase activity|GO:0016688|9291097|TAS  go_function L-ascorbate peroxidase activity|GO:0016688||ISS  product APX1 (ascorbate peroxidase 1); L-ascorbate peroxidase  note ascorbate peroxidase 1 (APX1); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: embryonic development ending in seed dormancy, response to reactive oxygen species, response to cadmium ion, response to salt stress, response to heat; LOCATED IN: cytosol, cell wall, chloroplast, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: APX2 (ASCORBATE PEROXIDASE 2); L-ascorbate peroxidase (TAIR:AT3G09640.2); Has 6498 Blast hits to 5997 proteins in 880 species: Archae - 46; Bacteria - 2022; Metazoa - 2; Fungi - 626; Plants - 2150; Viruses - 0; Other Eukaryotes - 1652 (source: NCBI BLink).  protein_id AT1G07890.5p  transcript_id AT1G07890.5  protein_id AT1G07890.5p  transcript_id AT1G07890.5  
At1g07890	chr1:002438005	0.0	W/2438005-2438123,2438211-2438385,2438491-2438556,2438709-2438843,2438935-2439014,2439088-2439190,2439278-2439336,2439420-2439435	AT1G07890.7  CDS  gene_syn APX1, ASCORBATE PEROXIDASE, ATAPX1, CS1, F24B9.2, F24B9_2, MEE6, ascorbate peroxidase 1, maternal effect embryo arrest 6  gene APX1  function Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component cytosol|GO:0005829|8422923|TAS  go_process response to reactive oxygen species|GO:0000302|15608336|IMP  go_process response to heat|GO:0009408|9808745|IEP  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function L-ascorbate peroxidase activity|GO:0016688|9291097|TAS  go_function L-ascorbate peroxidase activity|GO:0016688||ISS  product APX1 (ascorbate peroxidase 1); L-ascorbate peroxidase  note ascorbate peroxidase 1 (APX1); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: embryonic development ending in seed dormancy, response to reactive oxygen species, response to salt stress, response to heat; LOCATED IN: cytosol, chloroplast, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: APX2 (ASCORBATE PEROXIDASE 2); L-ascorbate peroxidase (TAIR:AT3G09640.2); Has 6498 Blast hits to 5997 proteins in 880 species: Archae - 46; Bacteria - 2022; Metazoa - 2; Fungi - 626; Plants - 2150; Viruses - 0; Other Eukaryotes - 1652 (source: NCBI BLink).  protein_id AT1G07890.7p  transcript_id AT1G07890.7  protein_id AT1G07890.7p  transcript_id AT1G07890.7  
At1g07890	chr1:002438005	0.0	W/2438005-2438123,2438211-2438385,2438491-2438556,2438709-2438843,2438935-2439014,2439088-2439190,2439278-2439336,2439420-2439435	AT1G07890.8  CDS  gene_syn APX1, ASCORBATE PEROXIDASE, ATAPX1, CS1, F24B9.2, F24B9_2, MEE6, ascorbate peroxidase 1, maternal effect embryo arrest 6  gene APX1  function Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component cytosol|GO:0005829|8422923|TAS  go_process response to reactive oxygen species|GO:0000302|15608336|IMP  go_process response to heat|GO:0009408|9808745|IEP  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function L-ascorbate peroxidase activity|GO:0016688|9291097|TAS  go_function L-ascorbate peroxidase activity|GO:0016688||ISS  product APX1 (ascorbate peroxidase 1); L-ascorbate peroxidase  note ascorbate peroxidase 1 (APX1); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: embryonic development ending in seed dormancy, response to reactive oxygen species, response to salt stress, response to heat; LOCATED IN: cytosol, chloroplast, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: APX2 (ASCORBATE PEROXIDASE 2); L-ascorbate peroxidase (TAIR:AT3G09640.2); Has 6498 Blast hits to 5997 proteins in 880 species: Archae - 46; Bacteria - 2022; Metazoa - 2; Fungi - 626; Plants - 2150; Viruses - 0; Other Eukaryotes - 1652 (source: NCBI BLink).  protein_id AT1G07890.8p  transcript_id AT1G07890.8  protein_id AT1G07890.8p  transcript_id AT1G07890.8  
At1g07890	chr1:002438005	0.0	W/2438005-2438123,2438211-2438385,2438491-2438556,2438709-2438843,2438935-2439014,2439088-2439190,2439278-2439349	AT1G07890.6  CDS  gene_syn APX1, ASCORBATE PEROXIDASE, ATAPX1, CS1, F24B9.2, F24B9_2, MEE6, ascorbate peroxidase 1, maternal effect embryo arrest 6  gene APX1  function Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component cytosol|GO:0005829|8422923|TAS  go_process response to reactive oxygen species|GO:0000302|15608336|IMP  go_process response to heat|GO:0009408|9808745|IEP  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function L-ascorbate peroxidase activity|GO:0016688|9291097|TAS  go_function L-ascorbate peroxidase activity|GO:0016688||ISS  product APX1 (ascorbate peroxidase 1); L-ascorbate peroxidase  note ascorbate peroxidase 1 (APX1); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: embryonic development ending in seed dormancy, response to reactive oxygen species, response to salt stress, response to heat; LOCATED IN: cytosol, chloroplast, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: APX2 (ASCORBATE PEROXIDASE 2); L-ascorbate peroxidase (TAIR:AT3G09640.2); Has 6521 Blast hits to 6023 proteins in 880 species: Archae - 46; Bacteria - 2019; Metazoa - 2; Fungi - 626; Plants - 2176; Viruses - 0; Other Eukaryotes - 1652 (source: NCBI BLink).  protein_id AT1G07890.6p  transcript_id AT1G07890.6  protein_id AT1G07890.6p  transcript_id AT1G07890.6  
At1g07900	chr1:002442624	0.0	W/2442624-2442860,2443296-2443631	AT1G07900.1  CDS  gene_syn F24B9.1, F24B9_1, LBD1, LOB DOMAIN-CONTAINING PROTEIN 1  gene LBD1  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  product LBD1 (LOB DOMAIN-CONTAINING PROTEIN 1)  note LOB DOMAIN-CONTAINING PROTEIN 1 (LBD1); INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD11 (LOB DOMAIN-CONTAINING PROTEIN 11) (TAIR:AT2G28500.1); Has 594 Blast hits to 591 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 594; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G07900.1p  transcript_id AT1G07900.1  protein_id AT1G07900.1p  transcript_id AT1G07900.1  
At1g07901	chr1:002443971	0.0	C/2443971-2444123	AT1G07901.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G07901.1p  transcript_id AT1G07901.1  protein_id AT1G07901.1p  transcript_id AT1G07901.1  
At1g07910	chr1:002446712	0.0	W/2446712-2447104,2447201-2447251,2447345-2447427,2447844-2447943,2448048-2448126,2448228-2448351,2448702-2448808,2448929-2449057,2449163-2449227,2449344-2449499,2449654-2449814,2449917-2449948,2450208-2450371,2450487-2450566,2450763-2450828,2450986-2451275,2451568-2451675,2451768-2451865,2452044-2452104,2452469-2452545,2452657-2452728,2452807-2452883,2453003-2453083,2453442-2453544,2453698-2453856,2453988-2454386	AT1G07910.1  CDS  gene_syn ARABIDOPSIS THALIANA RNA LIGASE, ATRNL, RNA LIGASE, RNL, T6D22.1, T6D22_1, TRNA LIGASE  gene RNL  function Encodes a tRNA ligase that resembles the yeast Trl1 RNA ligase in structure and function but very different in sequence. Like Trl1, AtRNL consists of two domains  an N-terminal ligase component and a C-terminal 5 -kinase/2 ,3 -cyclic phosphodiesterase (CPD) component  that can function in tRNA splicing in vivo when expressed as separate polypeptides. Requires a 2 -PO4 end for tRNA splicing in vivo.  go_process tRNA splicing, via endonucleolytic cleavage and ligation|GO:0006388|15653639|IDA  go_process tRNA splicing, via endonucleolytic cleavage and ligation|GO:0006388|16428247|TAS  go_function RNA ligase (ATP) activity|GO:0003972|16428247|IGI  go_function 2 ,3 -cyclic-nucleotide 3 -phosphodiesterase activity|GO:0004113|16428247|IGI  go_function polynucleotide kinase activity|GO:0051731|16428247|IGI  product RNL (RNA LIGASE); 2 ,3 -cyclic-nucleotide 3 -phosphodiesterase/ RNA ligase (ATP)/ polynucleotide kinase  note RNA LIGASE (RNL); FUNCTIONS IN: polynucleotide kinase activity, RNA ligase (ATP) activity, 2 ,3 -cyclic-nucleotide 3 -phosphodiesterase activity; INVOLVED IN: tRNA splicing, via endonucleolytic cleavage and ligation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; Has 40 Blast hits to 33 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G07910.1p  transcript_id AT1G07910.1  protein_id AT1G07910.1p  transcript_id AT1G07910.1  
At1g07910	chr1:002446712	0.0	W/2446712-2447104,2447201-2447251,2447345-2447427,2447844-2447943,2448048-2448126,2448228-2448351,2448702-2448808,2448929-2449057,2449163-2449227,2449344-2449499,2449654-2449814,2449917-2449948,2450208-2450371,2450487-2450566,2450763-2450828,2450986-2451275,2451568-2451675,2451768-2451865,2452044-2452104,2452469-2452545,2452657-2452728,2452807-2452883,2453003-2453083,2453442-2453544,2453698-2453856,2453988-2454386	AT1G07910.2  CDS  gene_syn ARABIDOPSIS THALIANA RNA LIGASE, ATRNL, RNA LIGASE, RNL, T6D22.1, T6D22_1, TRNA LIGASE  gene RNL  function Encodes a tRNA ligase that resembles the yeast Trl1 RNA ligase in structure and function but very different in sequence. Like Trl1, AtRNL consists of two domains  an N-terminal ligase component and a C-terminal 5 -kinase/2 ,3 -cyclic phosphodiesterase (CPD) component  that can function in tRNA splicing in vivo when expressed as separate polypeptides. Requires a 2 -PO4 end for tRNA splicing in vivo.  go_process tRNA splicing, via endonucleolytic cleavage and ligation|GO:0006388|15653639|IDA  go_process tRNA splicing, via endonucleolytic cleavage and ligation|GO:0006388|16428247|TAS  go_function RNA ligase (ATP) activity|GO:0003972|16428247|IGI  go_function 2 ,3 -cyclic-nucleotide 3 -phosphodiesterase activity|GO:0004113|16428247|IGI  go_function polynucleotide kinase activity|GO:0051731|16428247|IGI  product RNL (RNA LIGASE); 2 ,3 -cyclic-nucleotide 3 -phosphodiesterase/ RNA ligase (ATP)/ polynucleotide kinase  note RNA LIGASE (RNL); FUNCTIONS IN: polynucleotide kinase activity, RNA ligase (ATP) activity, 2 ,3 -cyclic-nucleotide 3 -phosphodiesterase activity; INVOLVED IN: tRNA splicing, via endonucleolytic cleavage and ligation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages.  protein_id AT1G07910.2p  transcript_id AT1G07910.2  protein_id AT1G07910.2p  transcript_id AT1G07910.2  
At1g07920	chr1:002455559	0.0	W/2455559-2456020,2456114-2457001	AT1G07920.1  CDS  gene_syn T6D22.2, T6D22_2  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component mitochondrion|GO:0005739|14671022|IDA  go_function translation elongation factor activity|GO:0003746||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  product elongation factor 1-alpha / EF-1-alpha  note elongation factor 1-alpha / EF-1-alpha; FUNCTIONS IN: calmodulin binding, translation elongation factor activity; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, nucleolus, plasma membrane, chloroplast, membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EF1A, eukaryotic and archaeal (InterPro:IPR004539), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: elongation factor 1-alpha / EF-1-alpha (TAIR:AT5G60390.3); Has 56800 Blast hits to 56727 proteins in 13736 species: Archae - 656; Bacteria - 18781; Metazoa - 15486; Fungi - 8697; Plants - 1228; Viruses - 3; Other Eukaryotes - 11949 (source: NCBI BLink).  protein_id AT1G07920.1p  transcript_id AT1G07920.1  protein_id AT1G07920.1p  transcript_id AT1G07920.1  
At1g07930	chr1:002459014	0.0	W/2459014-2459475,2459571-2459870,2460102-2460458	AT1G07930.2  CDS  gene_syn T6D22.31  go_process translational elongation|GO:0006414||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function translation elongation factor activity|GO:0003746||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  product elongation factor 1-alpha / EF-1-alpha  note elongation factor 1-alpha / EF-1-alpha; FUNCTIONS IN: calmodulin binding, translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: mitochondrion; EXPRESSED IN: cotyledon, male gametophyte, guard cell; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EF1A, eukaryotic and archaeal (InterPro:IPR004539); BEST Arabidopsis thaliana protein match is: elongation factor 1-alpha / EF-1-alpha (TAIR:AT5G60390.3); Has 64129 Blast hits to 54772 proteins in 13649 species: Archae - 749; Bacteria - 18471; Metazoa - 20602; Fungi - 10665; Plants - 1525; Viruses - 0; Other Eukaryotes - 12117 (source: NCBI BLink).  protein_id AT1G07930.2p  transcript_id AT1G07930.2  protein_id AT1G07930.2p  transcript_id AT1G07930.2  
At1g07930	chr1:002459014	0.0	W/2459014-2459475,2459571-2460458	AT1G07930.1  CDS  gene_syn T6D22.31  go_component vacuole|GO:0005773|14760709|IDA  go_process translational elongation|GO:0006414||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function translation elongation factor activity|GO:0003746||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  product elongation factor 1-alpha / EF-1-alpha  note elongation factor 1-alpha / EF-1-alpha; FUNCTIONS IN: calmodulin binding, translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: mitochondrion, vacuole; EXPRESSED IN: cotyledon, male gametophyte, guard cell, juvenile leaf, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EF1A, eukaryotic and archaeal (InterPro:IPR004539), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: elongation factor 1-alpha / EF-1-alpha (TAIR:AT5G60390.3); Has 56800 Blast hits to 56727 proteins in 13736 species: Archae - 656; Bacteria - 18781; Metazoa - 15486; Fungi - 8697; Plants - 1228; Viruses - 3; Other Eukaryotes - 11949 (source: NCBI BLink).  protein_id AT1G07930.1p  transcript_id AT1G07930.1  protein_id AT1G07930.1p  transcript_id AT1G07930.1  
At1g07940	chr1:002464331	0.0	C/2464331-2464792,2463350-2464237	AT1G07940.1  CDS  gene_syn T6D22.3  go_component plasma membrane|GO:0005886|15060130|IDA  go_process translational elongation|GO:0006414||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function translation elongation factor activity|GO:0003746||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  product elongation factor 1-alpha / EF-1-alpha  note elongation factor 1-alpha / EF-1-alpha; FUNCTIONS IN: calmodulin binding, translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: guard cell, juvenile leaf, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EF1A, eukaryotic and archaeal (InterPro:IPR004539), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: elongation factor 1-alpha / EF-1-alpha (TAIR:AT5G60390.3); Has 56800 Blast hits to 56727 proteins in 13736 species: Archae - 656; Bacteria - 18781; Metazoa - 15486; Fungi - 8697; Plants - 1228; Viruses - 3; Other Eukaryotes - 11949 (source: NCBI BLink).  protein_id AT1G07940.1p  transcript_id AT1G07940.1  protein_id AT1G07940.1p  transcript_id AT1G07940.1  
At1g07940	chr1:002464331	0.0	C/2464331-2464792,2463350-2464237	AT1G07940.2  CDS  gene_syn T6D22.3  go_process translational elongation|GO:0006414||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function translation elongation factor activity|GO:0003746||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  product elongation factor 1-alpha / EF-1-alpha  note elongation factor 1-alpha / EF-1-alpha; FUNCTIONS IN: calmodulin binding, translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: mitochondrion; EXPRESSED IN: guard cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000), Translation elongation factor EF1A, eukaryotic and archaeal (InterPro:IPR004539); BEST Arabidopsis thaliana protein match is: elongation factor 1-alpha / EF-1-alpha (TAIR:AT5G60390.3); Has 56800 Blast hits to 56727 proteins in 13736 species: Archae - 656; Bacteria - 18781; Metazoa - 15486; Fungi - 8697; Plants - 1228; Viruses - 3; Other Eukaryotes - 11949 (source: NCBI BLink).  protein_id AT1G07940.2p  transcript_id AT1G07940.2  protein_id AT1G07940.2p  transcript_id AT1G07940.2  
At1g07950	chr1:002466818	0.0	C/2466818-2466982,2466640-2466705,2466061-2466294	AT1G07950.1  CDS  gene_syn T6D22.4, T6D22_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product surfeit locus protein 5 family protein / SURF5 family protein  note surfeit locus protein 5 family protein / SURF5 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Surfeit locus 5 (InterPro:IPR009332); BEST Arabidopsis thaliana protein match is: surfeit locus protein 5 family protein / SURF5 family protein (TAIR:AT1G16430.1); Has 181 Blast hits to 181 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 8; Plants - 30; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G07950.1p  transcript_id AT1G07950.1  protein_id AT1G07950.1p  transcript_id AT1G07950.1  
At1g07960	chr1:002467681	0.0	W/2467681-2467794,2468305-2468363,2468452-2468627,2468740-2468831	AT1G07960.1  CDS  gene_syn ATPDIL5-1, PDI-like 5-1, T6D22.5, T6D22_5  gene ATPDIL5-1  function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily.  go_component endomembrane system|GO:0012505||IEA  go_process cell redox homeostasis|GO:0045454||IEA  product ATPDIL5-1 (PDI-like 5-1)  note PDI-like 5-1 (ATPDIL5-1); INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: UNE5 (UNFERTILIZED EMBRYO SAC 5); protein disulfide isomerase (TAIR:AT2G47470.4); Has 8138 Blast hits to 6543 proteins in 1164 species: Archae - 27; Bacteria - 2367; Metazoa - 2682; Fungi - 612; Plants - 597; Viruses - 0; Other Eukaryotes - 1853 (source: NCBI BLink).  protein_id AT1G07960.1p  transcript_id AT1G07960.1  protein_id AT1G07960.1p  transcript_id AT1G07960.1  
At1g07960	chr1:002467681	0.0	W/2467681-2467794,2468305-2468363,2468452-2468627,2468740-2468831	AT1G07960.2  CDS  gene_syn ATPDIL5-1, PDI-like 5-1, T6D22.5, T6D22_5  gene ATPDIL5-1  function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily.  go_component endomembrane system|GO:0012505||IEA  go_process cell redox homeostasis|GO:0045454||IEA  product ATPDIL5-1 (PDI-like 5-1)  note PDI-like 5-1 (ATPDIL5-1); INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: UNE5 (UNFERTILIZED EMBRYO SAC 5); protein disulfide isomerase (TAIR:AT2G47470.4); Has 8138 Blast hits to 6543 proteins in 1164 species: Archae - 27; Bacteria - 2367; Metazoa - 2682; Fungi - 612; Plants - 597; Viruses - 0; Other Eukaryotes - 1853 (source: NCBI BLink).  protein_id AT1G07960.2p  transcript_id AT1G07960.2  protein_id AT1G07960.2p  transcript_id AT1G07960.2  
At1g07960	chr1:002467681	0.0	W/2467681-2467794,2468305-2468363,2468452-2468627,2468740-2468831	AT1G07960.3  CDS  gene_syn ATPDIL5-1, PDI-like 5-1, T6D22.5, T6D22_5  gene ATPDIL5-1  function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily.  go_component endomembrane system|GO:0012505||IEA  go_process cell redox homeostasis|GO:0045454||IEA  product ATPDIL5-1 (PDI-like 5-1)  note PDI-like 5-1 (ATPDIL5-1); INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: UNE5 (UNFERTILIZED EMBRYO SAC 5); protein disulfide isomerase (TAIR:AT2G47470.4); Has 8138 Blast hits to 6543 proteins in 1164 species: Archae - 27; Bacteria - 2367; Metazoa - 2682; Fungi - 612; Plants - 597; Viruses - 0; Other Eukaryotes - 1853 (source: NCBI BLink).  protein_id AT1G07960.3p  transcript_id AT1G07960.3  protein_id AT1G07960.3p  transcript_id AT1G07960.3  
At1g07970	chr1:002472313	0.0	C/2472313-2472518,2472041-2472096,2471046-2471947,2470690-2470888,2470232-2470435,2469780-2470153,2469528-2469668	AT1G07970.1  CDS  gene_syn T6D22.6, T6D22_6  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 164 Blast hits to 163 proteins in 58 species: Archae - 0; Bacteria - 2; Metazoa - 113; Fungi - 15; Plants - 20; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G07970.1p  transcript_id AT1G07970.1  protein_id AT1G07970.1p  transcript_id AT1G07970.1  
At1g07980	chr1:002474491	0.0	C/2474491-2474910,2473963-2474047,2473684-2473725,2473523-2473596	AT1G07980.1  CDS  gene_syn NF-YC10, NUCLEAR FACTOR Y, SUBUNIT C10, T6D22.7, T6D22_7  gene NF-YC10  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YC10 (NUCLEAR FACTOR Y, SUBUNIT C10); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT C10 (NF-YC10); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); Has 837 Blast hits to 835 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 384; Fungi - 200; Plants - 185; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT1G07980.1p  transcript_id AT1G07980.1  protein_id AT1G07980.1p  transcript_id AT1G07980.1  
At1g07985	chr1:002475508	0.0	W/2475508-2475942	AT1G07985.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Expressed protein  note Expressed protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 33 Blast hits to 33 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G07985.1p  transcript_id AT1G07985.1  protein_id AT1G07985.1p  transcript_id AT1G07985.1  
At1g07990	chr1:002477413	0.0	W/2477413-2477451,2477676-2477779,2477966-2478052,2478186-2478261,2478388-2478462,2478599-2478652,2478979-2479038,2479123-2479239,2479400-2479494,2479590-2479798,2480178-2480275,2480406-2480509,2480597-2480759,2480920-2481042,2481215-2481297,2481580-2481712,2481796-2481825,2481972-2482042,2482211-2482898	AT1G07990.1  CDS  gene_syn T6D22.8, T6D22_8  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product SIT4 phosphatase-associated family protein  note SIT4 phosphatase-associated family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SIT4 phosphatase-associated protein (InterPro:IPR007587); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28360.1); Has 810 Blast hits to 697 proteins in 146 species: Archae - 0; Bacteria - 27; Metazoa - 308; Fungi - 216; Plants - 63; Viruses - 3; Other Eukaryotes - 193 (source: NCBI BLink).  protein_id AT1G07990.1p  transcript_id AT1G07990.1  protein_id AT1G07990.1p  transcript_id AT1G07990.1  
At1g08000	chr1:002484304	0.0	C/2484304-2484564,2483460-2484125	AT1G08000.1  CDS  gene_syn T6D22.9, T6D22_9  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product zinc finger (GATA type) family protein  note zinc finger (GATA type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: zinc finger (GATA type) family protein (TAIR:AT1G08010.2); Has 872 Blast hits to 857 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 399; Plants - 408; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT1G08000.1p  transcript_id AT1G08000.1  protein_id AT1G08000.1p  transcript_id AT1G08000.1  
At1g08000	chr1:002484304	0.0	C/2484304-2484564,2483460-2484125	AT1G08000.2  CDS  gene_syn T6D22.9, T6D22_9  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product zinc finger (GATA type) family protein  note zinc finger (GATA type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: zinc finger (GATA type) family protein (TAIR:AT1G08010.2); Has 872 Blast hits to 857 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 399; Plants - 408; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT1G08000.2p  transcript_id AT1G08000.2  protein_id AT1G08000.2p  transcript_id AT1G08000.2  
At1g08005	chr1:002485344	0.0	W/2485344-2485511	AT1G08005.1  CDS  product unknown protein  note BEST Arabidopsis thaliana protein match is: SIT4 phosphatase-associated family protein (TAIR:AT1G07990.1); Has 11 Blast hits to 11 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G08005.1p  transcript_id AT1G08005.1  protein_id AT1G08005.1p  transcript_id AT1G08005.1  
At1g08010	chr1:002487136	0.0	C/2487136-2487402,2486202-2486846	AT1G08010.1  CDS  gene_syn T6D22.28, T6D22_28  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product zinc finger (GATA type) family protein  note zinc finger (GATA type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: zinc finger (GATA type) family protein (TAIR:AT1G08000.2); Has 927 Blast hits to 903 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 38; Fungi - 418; Plants - 418; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT1G08010.1p  transcript_id AT1G08010.1  protein_id AT1G08010.1p  transcript_id AT1G08010.1  
At1g08010	chr1:002487136	0.0	C/2487136-2487402,2486202-2486846	AT1G08010.2  CDS  gene_syn T6D22.28, T6D22_28  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product zinc finger (GATA type) family protein  note zinc finger (GATA type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: zinc finger (GATA type) family protein (TAIR:AT1G08000.2); Has 927 Blast hits to 903 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 38; Fungi - 418; Plants - 418; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT1G08010.2p  transcript_id AT1G08010.2  protein_id AT1G08010.2p  transcript_id AT1G08010.2  
At1g08030	chr1:002492687	0.0	C/2492687-2492741,2492419-2492590,2492262-2492333,2491683-2491968,2491434-2491574,2491250-2491354,2491007-2491157,2490425-2490426	AT1G08030.1  CDS  gene_syn T6D22.29, T6D22_29  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 26 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G08030.1p  transcript_id AT1G08030.1  protein_id AT1G08030.1p  transcript_id AT1G08030.1  
At1g08032	chr1:002494123	0.0	W/2494123-2494126,2494209-2494315	AT1G08032.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT1G08032.1p  transcript_id AT1G08032.1  protein_id AT1G08032.1p  transcript_id AT1G08032.1  
At1g08035	chr1:002494814	0.0	W/2494814-2495149	AT1G08035.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28330.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G08035.1p  transcript_id AT1G08035.1  protein_id AT1G08035.1p  transcript_id AT1G08035.1  
At1g08040	chr1:002497954	0.0	C/2497954-2497973,2497754-2497865,2497562-2497672,2497329-2497433,2497132-2497215,2496930-2497045,2496724-2496825,2496539-2496652,2496399-2496455,2496230-2496296,2496007-2496060,2495821-2495895,2495694-2495729,2495507-2495602	AT1G08040.1  CDS  gene_syn T6D22.12, T6D22_12  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28310.3); Has 193 Blast hits to 192 proteins in 15 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 179; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G08040.1p  transcript_id AT1G08040.1  protein_id AT1G08040.1p  transcript_id AT1G08040.1  
At1g08040	chr1:002497954	0.0	C/2497954-2497973,2497754-2497865,2497562-2497672,2497329-2497433,2497132-2497215,2496930-2497045,2496724-2496825,2496539-2496652,2496399-2496455,2496230-2496296,2496007-2496060,2495821-2495895,2495694-2495729,2495507-2495602	AT1G08040.2  CDS  gene_syn T6D22.12, T6D22_12  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28310.3); Has 193 Blast hits to 192 proteins in 15 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 179; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G08040.2p  transcript_id AT1G08040.2  protein_id AT1G08040.2p  transcript_id AT1G08040.2  
At1g08050	chr1:002501114	0.0	C/2501114-2501311,2499088-2500815	AT1G08050.1  CDS  gene_syn T6D22.13, T6D22_13  go_component plasma membrane|GO:0005886|17317660|IDA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G60710.1); Has 2554 Blast hits to 2543 proteins in 408 species: Archae - 24; Bacteria - 857; Metazoa - 700; Fungi - 139; Plants - 381; Viruses - 4; Other Eukaryotes - 449 (source: NCBI BLink).  protein_id AT1G08050.1p  transcript_id AT1G08050.1  protein_id AT1G08050.1p  transcript_id AT1G08050.1  
At1g08060	chr1:002509239	0.0	C/2509239-2510488,2509037-2509115,2508676-2508921,2508109-2508282,2506894-2507815,2506572-2506813,2505907-2506011,2504309-2505706,2504018-2504173,2503719-2503874,2503471-2503635,2503160-2503337,2502871-2503070,2502578-2502788,2501981-2502504	AT1G08060.1  CDS  gene_syn MAINTENANCE OF METHYLATION, MOM, MORPHEUS MOLECULE, T6D22.14, T6D22_14  gene MOM  go_component nucleus|GO:0005634|10821279|IDA  go_process chromatin silencing|GO:0006342|10821279|IMP  product MOM (MORPHEUS MOLECULE)  note MORPHEUS MOLECULE (MOM); INVOLVED IN: chromatin silencing; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: CHR4 (CHROMATIN REMODELING 4); ATP binding / DNA binding / chromatin binding / helicase/ nucleic acid binding / protein binding / zinc ion binding (TAIR:AT5G44800.1); Has 6644 Blast hits to 6032 proteins in 498 species: Archae - 4; Bacteria - 667; Metazoa - 2833; Fungi - 1426; Plants - 458; Viruses - 89; Other Eukaryotes - 1167 (source: NCBI BLink).  protein_id AT1G08060.1p  transcript_id AT1G08060.1  protein_id AT1G08060.1p  transcript_id AT1G08060.1  
At1g08060	chr1:002509239	0.0	C/2509239-2510488,2509037-2509115,2508676-2508921,2508109-2508282,2506894-2507815,2506572-2506813,2505907-2506011,2504309-2505706,2504018-2504173,2503719-2503874,2503471-2503635,2503160-2503337,2502871-2503070,2502578-2502788,2501981-2502504	AT1G08060.2  CDS  gene_syn MAINTENANCE OF METHYLATION, MOM, MORPHEUS MOLECULE, T6D22.14, T6D22_14  gene MOM  go_component nucleus|GO:0005634|10821279|IDA  go_process chromatin silencing|GO:0006342|10821279|IMP  product MOM (MORPHEUS MOLECULE)  note MORPHEUS MOLECULE (MOM); INVOLVED IN: chromatin silencing; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: CHR4 (CHROMATIN REMODELING 4); ATP binding / DNA binding / chromatin binding / helicase/ nucleic acid binding / protein binding / zinc ion binding (TAIR:AT5G44800.1); Has 6644 Blast hits to 6032 proteins in 498 species: Archae - 4; Bacteria - 667; Metazoa - 2833; Fungi - 1426; Plants - 458; Viruses - 89; Other Eukaryotes - 1167 (source: NCBI BLink).  protein_id AT1G08060.2p  transcript_id AT1G08060.2  protein_id AT1G08060.2p  transcript_id AT1G08060.2  
At1g08065	chr1:002513254	0.0	C/2513254-2513341,2512889-2513106,2512690-2512802,2512432-2512534,2512151-2512318,2512004-2512057,2511788-2511877	AT1G08065.1  CDS  gene_syn ACA5, ALPHA CARBONIC ANHYDRASE 5, ATACA5, T6D22.30, T6D22_30  gene ACA5  go_component endomembrane system|GO:0012505||IEA  go_process one-carbon compound metabolic process|GO:0006730||IEA  go_function carbonate dehydratase activity|GO:0004089||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process one-carbon compound metabolic process|GO:0006730||ISS  go_function carbonate dehydratase activity|GO:0004089||ISS  go_function zinc ion binding|GO:0008270||ISS  product ACA5 (ALPHA CARBONIC ANHYDRASE 5); carbonate dehydratase/ zinc ion binding  note ALPHA CARBONIC ANHYDRASE 5 (ACA5); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: one-carbon compound metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, alpha-class, catalytic domain (InterPro:IPR001148), Carbonic anhydrase, CAH1-like (InterPro:IPR018340); BEST Arabidopsis thaliana protein match is: ACA7 (ALPHA CARBONIC ANHYDRASE 7); carbonate dehydratase/ zinc ion binding (TAIR:AT1G08080.1); Has 2423 Blast hits to 2410 proteins in 307 species: Archae - 0; Bacteria - 340; Metazoa - 1745; Fungi - 52; Plants - 163; Viruses - 6; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT1G08065.1p  transcript_id AT1G08065.1  protein_id AT1G08065.1p  transcript_id AT1G08065.1  
At1g08070	chr1:002514374	0.0	C/2514374-2516599	AT1G08070.1  CDS  gene_syn T6D22.15, T6D22_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G29760.1); Has 15909 Blast hits to 5618 proteins in 190 species: Archae - 0; Bacteria - 2; Metazoa - 215; Fungi - 128; Plants - 15150; Viruses - 0; Other Eukaryotes - 414 (source: NCBI BLink).  protein_id AT1G08070.1p  transcript_id AT1G08070.1  protein_id AT1G08070.1p  transcript_id AT1G08070.1  
At1g08080	chr1:002518444	0.0	C/2518444-2518546,2518154-2518371,2517826-2517932,2517628-2517730,2517351-2517518,2517214-2517267,2517022-2517096	AT1G08080.1  CDS  gene_syn A. THALIANA ALPHA CARBONIC ANHYDRASE 7, ACA7, ALPHA CARBONIC ANHYDRASE 7, ATACA7, T6D22.16, T6D22_16  gene ACA7  go_component endomembrane system|GO:0012505||IEA  go_process one-carbon compound metabolic process|GO:0006730||IEA  go_function carbonate dehydratase activity|GO:0004089||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process one-carbon compound metabolic process|GO:0006730||ISS  go_function carbonate dehydratase activity|GO:0004089||ISS  go_function zinc ion binding|GO:0008270||ISS  product ACA7 (ALPHA CARBONIC ANHYDRASE 7); carbonate dehydratase/ zinc ion binding  note ALPHA CARBONIC ANHYDRASE 7 (ACA7); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: one-carbon compound metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, alpha-class, catalytic domain (InterPro:IPR001148), Carbonic anhydrase, CAH1-like (InterPro:IPR018340), Carbonic anhydrase, alpha-class, conserved site (InterPro:IPR018338); BEST Arabidopsis thaliana protein match is: ACA5 (ALPHA CARBONIC ANHYDRASE 5); carbonate dehydratase/ zinc ion binding (TAIR:AT1G08065.1); Has 2490 Blast hits to 2469 proteins in 318 species: Archae - 0; Bacteria - 340; Metazoa - 1796; Fungi - 52; Plants - 162; Viruses - 5; Other Eukaryotes - 135 (source: NCBI BLink).  protein_id AT1G08080.1p  transcript_id AT1G08080.1  protein_id AT1G08080.1p  transcript_id AT1G08080.1  
At1g08090	chr1:002524139	0.0	W/2524139-2524948,2525049-2525164,2525254-2525920	AT1G08090.1  CDS  gene_syn ACH1, ATNRT2.1, ATNRT2:1, LATERAL ROOT INITIATION 1, LIN1, NITRATE TRANSPORTER 1, NITRATE TRANSPORTER 2, NITRATE TRANSPORTER 2.1, NITRATE TRANSPORTER 2:1, NRT2, NRT2.1, NRT2;1AT, T6D22.17, T6D22_17, TRANS-MEMBRANE NITRATE TRANSPORTER PROTEIN ATNRT2:1  gene ATNRT2:1  function High-affinity nitrate transporter. Up-regulated by nitrate. Functions as a repressor of lateral root initiation independently of nitrate uptake.  go_component membrane|GO:0016020|16157886|ISS  go_process response to nitrate|GO:0010167|16415212|IEP  go_process nitrate transport|GO:0015706|11165253|IMP  go_process nitrate transport|GO:0015706|16415211|IMP  go_process lateral root development|GO:0048527|16157886|IMP  go_process lateral root development|GO:0048527|16415211|IMP  go_function nitrate transmembrane transporter activity|GO:0015112|16157886|TAS  go_function nitrate transmembrane transporter activity|GO:0015112||ISS  product ATNRT2:1 (NITRATE TRANSPORTER 2:1); nitrate transmembrane transporter  note NITRATE TRANSPORTER 2:1 (ATNRT2:1); FUNCTIONS IN: nitrate transmembrane transporter activity; INVOLVED IN: nitrate transport, response to nitrate, lateral root development; LOCATED IN: membrane; EXPRESSED IN: shoot, root; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: NRT2.2 (NITRATE TRANSPORTER 2.2); nitrate transmembrane transporter (TAIR:AT1G08100.1); Has 3030 Blast hits to 2929 proteins in 773 species: Archae - 19; Bacteria - 2535; Metazoa - 22; Fungi - 170; Plants - 151; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).  protein_id AT1G08090.1p  transcript_id AT1G08090.1  protein_id AT1G08090.1p  transcript_id AT1G08090.1  
At1g08100	chr1:002528275	0.0	C/2528275-2529078,2528055-2528170,2527268-2527916	AT1G08100.1  CDS  gene_syn ACH2, ATNRT2.2, NITRATE TRANSPORTER 2, NITRATE TRANSPORTER 2.2, NRT2.2, NRT2;2AT, T6D22.18, T6D22_18  gene NRT2.2  function Encodes a high-affinity nitrate transporter.  go_process nitrate transport|GO:0015706|10205909|TAS  go_process nitrate transport|GO:0015706|16415211|IMP  go_process lateral root development|GO:0048527|16415211|IMP  go_function nitrate transmembrane transporter activity|GO:0015112||ISS  product NRT2.2 (NITRATE TRANSPORTER 2.2); nitrate transmembrane transporter  note NITRATE TRANSPORTER 2.2 (NRT2.2); FUNCTIONS IN: nitrate transmembrane transporter activity; INVOLVED IN: nitrate transport, lateral root development; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ATNRT2:1 (NITRATE TRANSPORTER 2:1); nitrate transmembrane transporter (TAIR:AT1G08090.1); Has 3115 Blast hits to 2990 proteins in 770 species: Archae - 15; Bacteria - 2605; Metazoa - 27; Fungi - 185; Plants - 151; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).  protein_id AT1G08100.1p  transcript_id AT1G08100.1  protein_id AT1G08100.1p  transcript_id AT1G08100.1  
At1g08105	chr1:002531695	0.0	C/2531695-2534786	AT1G08105.1  mRNA_TE_gene  pseudo  gene_syn T6D22.19, T6D22_19  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 1.0e-298 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At1g08110	chr1:002535463	0.0	W/2535463-2535585,2535675-2535794,2536396-2536457,2536567-2536627,2536877-2536956,2537039-2537109,2537330-2537419,2537530-2537630	AT1G08110.4  CDS  gene_syn T6D22.20, T6D22_20  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function lactoylglutathione lyase activity|GO:0004462||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  product lactoylglutathione lyase, putative / glyoxalase I, putative  note lactoylglutathione lyase, putative / glyoxalase I, putative; FUNCTIONS IN: calmodulin binding, lactoylglutathione lyase activity; INVOLVED IN: response to cadmium ion, carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361), Glyoxalase I, conserved site (InterPro:IPR018146), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: lactoylglutathione lyase, putative / glyoxalase I, putative (TAIR:AT1G67280.2); Has 3289 Blast hits to 3095 proteins in 883 species: Archae - 16; Bacteria - 1642; Metazoa - 143; Fungi - 259; Plants - 164; Viruses - 0; Other Eukaryotes - 1065 (source: NCBI BLink).  protein_id AT1G08110.4p  transcript_id AT1G08110.4  protein_id AT1G08110.4p  transcript_id AT1G08110.4  
At1g08110	chr1:002535702	0.0	W/2535702-2535794,2536396-2536457,2536567-2536627,2536877-2536956,2537039-2537109,2537330-2537419,2537530-2537630	AT1G08110.1  CDS  gene_syn T6D22.20, T6D22_20  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function lactoylglutathione lyase activity|GO:0004462||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  product lactoylglutathione lyase, putative / glyoxalase I, putative  note lactoylglutathione lyase, putative / glyoxalase I, putative; FUNCTIONS IN: calmodulin binding, lactoylglutathione lyase activity; INVOLVED IN: response to cadmium ion, carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361), Glyoxalase I, conserved site (InterPro:IPR018146), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: lactoylglutathione lyase, putative / glyoxalase I, putative (TAIR:AT1G67280.2); Has 3288 Blast hits to 3095 proteins in 883 species: Archae - 16; Bacteria - 1642; Metazoa - 143; Fungi - 259; Plants - 163; Viruses - 0; Other Eukaryotes - 1065 (source: NCBI BLink).  protein_id AT1G08110.1p  transcript_id AT1G08110.1  protein_id AT1G08110.1p  transcript_id AT1G08110.1  
At1g08110	chr1:002535702	0.0	W/2535702-2535794,2536396-2536457,2536567-2536627,2536877-2536956,2537039-2537109,2537330-2537419,2537530-2537630	AT1G08110.2  CDS  gene_syn T6D22.20, T6D22_20  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function lactoylglutathione lyase activity|GO:0004462||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  product lactoylglutathione lyase, putative / glyoxalase I, putative  note lactoylglutathione lyase, putative / glyoxalase I, putative; FUNCTIONS IN: calmodulin binding, lactoylglutathione lyase activity; INVOLVED IN: response to cadmium ion, carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361), Glyoxalase I, conserved site (InterPro:IPR018146), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: lactoylglutathione lyase, putative / glyoxalase I, putative (TAIR:AT1G67280.2); Has 3288 Blast hits to 3095 proteins in 883 species: Archae - 16; Bacteria - 1642; Metazoa - 143; Fungi - 259; Plants - 163; Viruses - 0; Other Eukaryotes - 1065 (source: NCBI BLink).  protein_id AT1G08110.2p  transcript_id AT1G08110.2  protein_id AT1G08110.2p  transcript_id AT1G08110.2  
At1g08110	chr1:002535702	0.0	W/2535702-2535794,2536396-2536457,2536567-2536627,2536877-2536956,2537039-2537109,2537330-2537419,2537530-2537630	AT1G08110.3  CDS  gene_syn T6D22.20, T6D22_20  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function lactoylglutathione lyase activity|GO:0004462||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  product lactoylglutathione lyase, putative / glyoxalase I, putative  note lactoylglutathione lyase, putative / glyoxalase I, putative; FUNCTIONS IN: calmodulin binding, lactoylglutathione lyase activity; INVOLVED IN: response to cadmium ion, carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361), Glyoxalase I, conserved site (InterPro:IPR018146), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: lactoylglutathione lyase, putative / glyoxalase I, putative (TAIR:AT1G67280.2); Has 3288 Blast hits to 3095 proteins in 883 species: Archae - 16; Bacteria - 1642; Metazoa - 143; Fungi - 259; Plants - 163; Viruses - 0; Other Eukaryotes - 1065 (source: NCBI BLink).  protein_id AT1G08110.3p  transcript_id AT1G08110.3  protein_id AT1G08110.3p  transcript_id AT1G08110.3  
At1g08115	chr1:002538076	0.0	C/2538076-2538237	AT1G08115.1  snRNA  gene_syn 52201.SNRNA00001  function U1A small nuclear RNA  go_component snRNP U1|GO:0005685||TAS  go_process nuclear mRNA splicing, via spliceosome|GO:0000398||TAS  product snRNA  note gi|22293581|emb|AJ505685.1|ATH505685 Arabidopsis putative U1a snRNA (U1asnRNA gene), 5  end incomplete, At5g05684  transcript_id AT1G08115.1  
At1g08120	chr1:002538678	0.0	W/2538678-2538941	AT1G08120.1  CDS  gene_syn T6D22.21, T6D22_21  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ATP binding / catalytic/ protein kinase (TAIR:AT5G26110.1); Has 380 Blast hits to 380 proteins in 166 species: Archae - 115; Bacteria - 0; Metazoa - 110; Fungi - 39; Plants - 20; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT1G08120.1p  transcript_id AT1G08120.1  protein_id AT1G08120.1p  transcript_id AT1G08120.1  
At1g08125	chr1:002542217	0.0	C/2542217-2542230,2541796-2541862,2541656-2541721,2541116-2541209,2540881-2540997,2540588-2540685,2540410-2540484,2540237-2540329,2539852-2540163,2539748-2539759	AT1G08125.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Expressed protein  note Expressed protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G73320.1); Has 986 Blast hits to 984 proteins in 169 species: Archae - 0; Bacteria - 58; Metazoa - 387; Fungi - 270; Plants - 163; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT1G08125.1p  transcript_id AT1G08125.1  protein_id AT1G08125.1p  transcript_id AT1G08125.1  
At1g08130	chr1:002547030	0.0	C/2547030-2547815,2546793-2546909,2546563-2546664,2546370-2546486,2545909-2546139,2545720-2545814,2545554-2545641,2544964-2545095,2544745-2544857,2544060-2544161,2543920-2543981,2543769-2543840,2543595-2543668,2543460-2543516,2543277-2543354,2543097-2543174,2542913-2542981	AT1G08130.1  CDS  gene_syn ARABIDOPSIS THALIANA DNA LIGASE 1, ATLIG1, T6D22.23  gene ATLIG1  function Encodes the Arabidopsis DNA ligase 1 that provides the major DNA ligase activity in cells and plays a key role in both DNA replication and excision repair pathways. Indispensable for cell viability. AtLIG1 expresses one major and two minor mRNA transcripts differing only in the length of the 5  untranslated leader sequences preceding a common ORF. Translation from the first in-frame start codon produces an AtLIG1 isoform that is targeted exclusively to the mitochondria. Translation initiation from the second in-frame start codon produces an AtLIG1 isoform targeted only to the nucleus.  go_process DNA replication|GO:0006260||IEA  go_process DNA repair|GO:0006281||IEA  go_process DNA recombination|GO:0006310||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA ligase (ATP) activity|GO:0003910||IEA  go_function ATP binding|GO:0005524||IEA  go_component nucleus|GO:0005634|16790030|IDA  go_component mitochondrion|GO:0005739|16790030|IDA  go_function DNA ligase (ATP) activity|GO:0003910||ISS  go_function ATP binding|GO:0005524||ISS  product ATLIG1 (ARABIDOPSIS THALIANA DNA LIGASE 1); ATP binding / DNA binding / DNA ligase (ATP)  note ARABIDOPSIS THALIANA DNA LIGASE 1 (ATLIG1); FUNCTIONS IN: DNA binding, DNA ligase (ATP) activity, ATP binding; INVOLVED IN: DNA repair, DNA replication, DNA recombination; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA ligase, N-terminal (InterPro:IPR012308), ATP dependent DNA ligase, central (InterPro:IPR012310), ATP dependent DNA ligase, C-terminal (InterPro:IPR012309), ATP-dependent DNA ligase, conserved site (InterPro:IPR016059), ATP-dependent DNA ligase (InterPro:IPR000977); BEST Arabidopsis thaliana protein match is: ATP dependent DNA ligase family protein (TAIR:AT1G49250.1); Has 2509 Blast hits to 2484 proteins in 599 species: Archae - 187; Bacteria - 920; Metazoa - 320; Fungi - 284; Plants - 48; Viruses - 150; Other Eukaryotes - 600 (source: NCBI BLink).  protein_id AT1G08130.1p  transcript_id AT1G08130.1  protein_id AT1G08130.1p  transcript_id AT1G08130.1  
At1g08135	chr1:002550085	0.0	C/2550085-2551473,2549338-2549991,2548819-2549250	AT1G08135.1  CDS  gene_syn ATCHX6B, CATION/H+ EXCHANGER 6B, CHX6B  gene CHX6B  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|IC  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  product CHX6B (CATION/H+ EXCHANGER 6B); monovalent cation:proton antiporter  note CATION/H+ EXCHANGER 6B (CHX6B); FUNCTIONS IN: monovalent cation:proton antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: ATCHX6A (CATION/H+ EXCHANGER 6A); monovalent cation:proton antiporter/ sodium:hydrogen antiporter (TAIR:AT1G08140.1); Has 679 Blast hits to 671 proteins in 225 species: Archae - 47; Bacteria - 315; Metazoa - 0; Fungi - 76; Plants - 223; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G08135.1p  transcript_id AT1G08135.1  protein_id AT1G08135.1p  transcript_id AT1G08135.1  
At1g08140	chr1:002554796	0.0	C/2554796-2555074,2553681-2554700,2552924-2553586,2552206-2552700	AT1G08140.1  CDS  gene_syn ATCHX6A, CATION/H+ EXCHANGER 6A, CHX6A  gene ATCHX6A  function member of Putative Na+/H+ antiporter family  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|IC  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product ATCHX6A (CATION/H+ EXCHANGER 6A); monovalent cation:proton antiporter/ sodium:hydrogen antiporter  note CATION/H+ EXCHANGER 6A (ATCHX6A); FUNCTIONS IN: monovalent cation:proton antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: ATCHX5; monovalent cation:proton antiporter/ sodium:hydrogen antiporter (TAIR:AT1G08150.1); Has 756 Blast hits to 745 proteins in 249 species: Archae - 39; Bacteria - 362; Metazoa - 0; Fungi - 76; Plants - 231; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT1G08140.1p  transcript_id AT1G08140.1  protein_id AT1G08140.1p  transcript_id AT1G08140.1  
At1g08150	chr1:002558772	0.0	C/2558772-2559074,2557671-2558690,2556907-2557566,2556343-2556807	AT1G08150.1  CDS  gene_syn ATCHX5, CATION/H+ EXCHANGER 5, CHX5, T6D22.24  gene ATCHX5  function member of Putative Na+/H+ antiporter family  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|IC  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product ATCHX5; monovalent cation:proton antiporter/ sodium:hydrogen antiporter  note ATCHX5; FUNCTIONS IN: monovalent cation:proton antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: ATCHX6A (CATION/H+ EXCHANGER 6A); monovalent cation:proton antiporter/ sodium:hydrogen antiporter (TAIR:AT1G08140.1); Has 1344 Blast hits to 1333 proteins in 428 species: Archae - 96; Bacteria - 894; Metazoa - 0; Fungi - 79; Plants - 230; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT1G08150.1p  transcript_id AT1G08150.1  protein_id AT1G08150.1p  transcript_id AT1G08150.1  
At1g08160	chr1:002559672	0.0	C/2559672-2560337	AT1G08160.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product harpin-induced protein-related / HIN1-related / harpin-responsive protein-related  note harpin-induced protein-related / HIN1-related / harpin-responsive protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: harpin-induced protein-related / HIN1-related / harpin-responsive protein-related (TAIR:AT5G22870.1); Has 400 Blast hits to 400 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 400; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G08160.1p  transcript_id AT1G08160.1  protein_id AT1G08160.1p  transcript_id AT1G08160.1  
At1g08165	chr1:002562056	0.0	C/2562056-2562148,2561913-2561963	AT1G08165.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G08165.1p  transcript_id AT1G08165.1  protein_id AT1G08165.1p  transcript_id AT1G08165.1  
At1g08170	chr1:002562941	0.0	C/2562941-2563672	AT1G08170.1  CDS  gene_syn T6D22.26  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product histone H2B family protein  note histone H2B family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: HTB4; DNA binding (TAIR:AT5G59910.1); Has 2843 Blast hits to 2827 proteins in 285 species: Archae - 0; Bacteria - 25; Metazoa - 1932; Fungi - 199; Plants - 365; Viruses - 0; Other Eukaryotes - 322 (source: NCBI BLink).  protein_id AT1G08170.1p  transcript_id AT1G08170.1  protein_id AT1G08170.1p  transcript_id AT1G08170.1  
At1g08180	chr1:002564741	0.0	C/2564741-2565076	AT1G08180.1  CDS  gene_syn T23G18.4, T23G18_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G02420.1); Has 17 Blast hits to 17 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G08180.1p  transcript_id AT1G08180.1  protein_id AT1G08180.1p  transcript_id AT1G08180.1  
At1g08190	chr1:002567652	0.0	W/2567652-2567921,2568161-2568433,2568512-2568691,2568788-2569045,2569148-2569280,2569369-2569459,2569556-2569658,2570019-2570122,2570208-2570301,2570473-2570628,2570708-2570770,2570878-2570943,2571265-2571492,2571584-2571661,2571750-2571869,2571998-2572078,2572192-2572277,2572496-2572577,2572666-2573142	AT1G08190.1  CDS  gene_syn T23G18.5, T23G18_5  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function nucleotide binding|GO:0000166||ISS  product vacuolar assembly protein, putative (VPS41)  note vacuolar assembly protein, putative (VPS41); FUNCTIONS IN: protein binding, binding, nucleotide binding, zinc ion binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), WD40 repeat (InterPro:IPR001680), Vacuolar protein sorting-associated protein 41 (InterPro:IPR016902), WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), Armadillo-type fold (InterPro:IPR016024), Clathrin, heavy chain/VPS, 7-fold repeat (InterPro:IPR000547); Has 18653 Blast hits to 4150 proteins in 294 species: Archae - 4; Bacteria - 280; Metazoa - 13631; Fungi - 995; Plants - 521; Viruses - 352; Other Eukaryotes - 2870 (source: NCBI BLink).  protein_id AT1G08190.1p  transcript_id AT1G08190.1  protein_id AT1G08190.1p  transcript_id AT1G08190.1  
At1g08200	chr1:002576334	0.0	C/2576334-2576609,2576094-2576186,2575862-2575969,2575282-2575396,2575067-2575200,2574876-2574977,2574687-2574779,2574458-2574593,2574259-2574371	AT1G08200.1  CDS  gene_syn AXS2, T23G18.6, T23G18_6, UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 2  gene AXS2  function Encodes a putative UDP-D-apiose/UPD-D-xylose synthetase.  go_component apoplast|GO:0048046|18538804|IDA  go_component cytoplasm|GO:0005737|12969423|NAS  go_process nucleotide-sugar biosynthetic process|GO:0009226|12969423|ISS  go_function UDP-glucuronate decarboxylase activity|GO:0048040|12969423|ISS  product AXS2 (UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 2); UDP-glucuronate decarboxylase  note UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 2 (AXS2); FUNCTIONS IN: UDP-glucuronate decarboxylase activity; INVOLVED IN: nucleotide-sugar biosynthetic process; LOCATED IN: apoplast, cytoplasm; EXPRESSED IN: fruit, guard cell, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: AXS1 (UDP-D-apiose/UDP-D-xylose synthase 1); NAD or NADH binding / UDP-glucuronate decarboxylase (TAIR:AT2G27860.1); Has 12467 Blast hits to 12460 proteins in 1495 species: Archae - 286; Bacteria - 6457; Metazoa - 227; Fungi - 54; Plants - 643; Viruses - 8; Other Eukaryotes - 4792 (source: NCBI BLink).  protein_id AT1G08200.1p  transcript_id AT1G08200.1  protein_id AT1G08200.1p  transcript_id AT1G08200.1  
At1g08210	chr1:002580337	0.0	C/2580337-2580581,2579819-2579948,2579434-2579678,2578865-2579092,2578315-2578477,2578040-2578113,2577864-2577957,2577510-2577576,2577357-2577428,2577119-2577279	AT1G08210.1  CDS  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: anchored to membrane, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT5G22850.1); Has 3530 Blast hits to 3512 proteins in 308 species: Archae - 0; Bacteria - 0; Metazoa - 1402; Fungi - 712; Plants - 1209; Viruses - 0; Other Eukaryotes - 207 (source: NCBI BLink).  protein_id AT1G08210.1p  transcript_id AT1G08210.1  protein_id AT1G08210.1p  transcript_id AT1G08210.1  
At1g08220	chr1:002582797	0.0	C/2582797-2582850,2582370-2582558,2582087-2582158,2581788-2581963,2581574-2581691	AT1G08220.2  CDS  gene_syn T23G18.8, T23G18_8  go_component mitochondrial inner membrane|GO:0005743||IEA  go_process mitochondrial proton-transporting ATP synthase complex assembly|GO:0033615||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mitochondrial proton-transporting ATP synthase complex assembly; LOCATED IN: mitochondrial inner membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase assembly factor ATP10, mitochondria (InterPro:IPR007849); Has 94 Blast hits to 94 proteins in 44 species: Archae - 6; Bacteria - 0; Metazoa - 2; Fungi - 57; Plants - 15; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G08220.2p  transcript_id AT1G08220.2  protein_id AT1G08220.2p  transcript_id AT1G08220.2  
At1g08220	chr1:002583124	0.0	C/2583124-2583288,2582998-2583038,2582797-2582860,2582370-2582558,2582087-2582158,2581788-2581963,2581574-2581691	AT1G08220.1  CDS  gene_syn T23G18.8, T23G18_8  go_component mitochondrial inner membrane|GO:0005743||IEA  go_process mitochondrial proton-transporting ATP synthase complex assembly|GO:0033615||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mitochondrial proton-transporting ATP synthase complex assembly; LOCATED IN: mitochondrial inner membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase assembly factor ATP10, mitochondria (InterPro:IPR007849); Has 100 Blast hits to 100 proteins in 48 species: Archae - 6; Bacteria - 0; Metazoa - 2; Fungi - 63; Plants - 15; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G08220.1p  transcript_id AT1G08220.1  protein_id AT1G08220.1p  transcript_id AT1G08220.1  
At1g08230	chr1:002586613	0.0	C/2586613-2586700,2586289-2586519,2584800-2585084,2584580-2584710,2584203-2584442,2583715-2584095	AT1G08230.2  CDS  product amino acid transporter family protein  note amino acid transporter family protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid transporter family protein (TAIR:AT5G41800.1); Has 1756 Blast hits to 1754 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 500; Fungi - 204; Plants - 790; Viruses - 0; Other Eukaryotes - 262 (source: NCBI BLink).  protein_id AT1G08230.2p  transcript_id AT1G08230.2  protein_id AT1G08230.2p  transcript_id AT1G08230.2  
At1g08240	chr1:002588525	0.0	W/2588525-2588596	AT1G08240.1  tRNA  gene_syn 51687.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: TCC)  transcript_id AT1G08240.1  
At1g08250	chr1:002588994	0.0	C/2588994-2590235	AT1G08250.1  CDS  gene_syn ADT6, T23G18.10, T23G18_10, arogenate dehydratase 6  gene ADT6  function Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identi& 64257;ed in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250].  go_process L-phenylalanine biosynthetic process|GO:0009094||IEA  go_component chloroplast|GO:0009507|19136569|IDA  go_process L-phenylalanine biosynthetic process|GO:0009094||ISS  go_function prephenate dehydratase activity|GO:0004664||ISS  go_function arogenate dehydratase activity|GO:0047769|17726025|IDA  product ADT6 (arogenate dehydratase 6); arogenate dehydratase/ prephenate dehydratase  note arogenate dehydratase 6 (ADT6); FUNCTIONS IN: arogenate dehydratase activity, prephenate dehydratase activity; INVOLVED IN: L-phenylalanine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prephenate dehydratase (InterPro:IPR001086), Prephenate dehydratase, conserved site (InterPro:IPR018528); BEST Arabidopsis thaliana protein match is: PD1 (PREPHENATE DEHYDRATASE 1); arogenate dehydratase/ prephenate dehydratase (TAIR:AT2G27820.1); Has 4937 Blast hits to 4937 proteins in 1195 species: Archae - 120; Bacteria - 2080; Metazoa - 2; Fungi - 70; Plants - 134; Viruses - 0; Other Eukaryotes - 2531 (source: NCBI BLink).  protein_id AT1G08250.1p  transcript_id AT1G08250.1  protein_id AT1G08250.1p  transcript_id AT1G08250.1  
At1g08260	chr1:002590944	0.0	W/2590944-2591102,2591317-2591382,2591505-2591564,2591661-2591756,2592182-2592342,2592499-2592587,2592665-2592882,2593253-2593339,2593423-2593557,2594093-2594215,2594326-2594409,2594744-2594908,2594993-2595115,2595430-2595543,2595966-2596070,2596267-2596385,2596475-2596619,2596694-2596788,2596944-2597049,2597132-2597211,2597308-2597484,2597689-2597773,2597919-2597999,2598083-2598226,2598769-2598864,2599010-2599210,2599631-2599685,2599765-2599907,2599997-2600394,2600538-2600667,2600749-2600952,2601023-2601097,2601605-2601795,2602097-2602277,2602358-2602422,2602759-2602891,2602993-2603094,2603180-2603263,2603515-2603589,2603718-2603777,2603849-2604111,2604186-2604234,2604533-2604693,2604792-2604858,2605178-2605279,2605394-2605513,2605601-2605789,2606079-2606185,2606523-2606892	AT1G08260.2  CDS  gene_syn ABA OVERLY SENSITIVE 4, ABO4, EMB2284, EMB529, EMBRYO DEFECTIVE 2284, EMBRYO DEFECTIVE 529, POL2A, T23G18.21, T23G18_21, TIL1, TILTED 1  gene TIL1  function Similar to POL2A, DNA polymerase epsilon catalytic subunit. Essential for Arabidopsis growth. Null homozygotes are embryo lethal, partial loss of function alleles show embryo patterning defects such as root pole displacement. Delayed progression through cell cycle results in embryos with smaller numbers of larger cells.  go_component apoplast|GO:0048046|18538804|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed DNA polymerase activity|GO:0003887||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component epsilon DNA polymerase complex|GO:0008622|16212602|IPI  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process positive regulation of S phase of mitotic cell cycle|GO:0045750|16278345|IMP  go_function DNA-directed DNA polymerase activity|GO:0003887||ISS  product TIL1 (TILTED 1); DNA binding / DNA-directed DNA polymerase/ nucleic acid binding / nucleotide binding / zinc ion binding  note EMBRYO DEFECTIVE 529 (EMB529); FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity, zinc ion binding, nucleotide binding, nucleic acid binding; INVOLVED IN: embryonic development ending in seed dormancy, positive regulation of S phase of mitotic cell cycle; LOCATED IN: apoplast, epsilon DNA polymerase complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1744 (InterPro:IPR013697), DNA-directed DNA polymerase, family B, exonuclease (InterPro:IPR006133), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), DNA-directed DNA polymerase, family B (InterPro:IPR006172), DNA-directed DNA polymerase, family B, conserved region (InterPro:IPR006134); BEST Arabidopsis thaliana protein match is: TIL2 (TILTED 2); DNA binding / DNA-directed DNA polymerase/ nucleic acid binding / nucleotide binding / zinc ion binding (TAIR:AT2G27120.1); Has 1567 Blast hits to 1383 proteins in 478 species: Archae - 273; Bacteria - 415; Metazoa - 252; Fungi - 213; Plants - 29; Viruses - 61; Other Eukaryotes - 324 (source: NCBI BLink).  protein_id AT1G08260.2p  transcript_id AT1G08260.2  protein_id AT1G08260.2p  transcript_id AT1G08260.2  
At1g08260	chr1:002590944	0.0	W/2590944-2591102,2591317-2591382,2591505-2591564,2591661-2591756,2592182-2592342,2592499-2592587,2592665-2592891,2593253-2593339,2593423-2593557,2594093-2594215,2594326-2594409,2594744-2594930,2594988-2595115,2595430-2595543,2595966-2596085,2596267-2596385,2596475-2596619,2596694-2596788,2596944-2597049,2597132-2597211,2597308-2597484,2597689-2597773,2597919-2597999,2598083-2598226,2598769-2598887,2598967-2599210,2599631-2599685,2599765-2599907,2599997-2600394,2600538-2600676,2600749-2600946,2601023-2601097,2601605-2601795,2602097-2602277,2602358-2602422,2602759-2602891,2602993-2603094,2603180-2603263,2603515-2603589,2603718-2603777,2603849-2604111,2604186-2604234,2604533-2604790,2605178-2605513,2605601-2605789,2605899-2606006,2606079-2606185,2606523-2606892	AT1G08260.1  CDS  gene_syn ABA OVERLY SENSITIVE 4, ABO4, EMB2284, EMB529, EMBRYO DEFECTIVE 2284, EMBRYO DEFECTIVE 529, POL2A, T23G18.21, T23G18_21, TIL1, TILTED 1  gene TIL1  function Similar to POL2A, DNA polymerase epsilon catalytic subunit. Essential for Arabidopsis growth. Null homozygotes are embryo lethal, partial loss of function alleles show embryo patterning defects such as root pole displacement. Delayed progression through cell cycle results in embryos with smaller numbers of larger cells.  go_component apoplast|GO:0048046|18538804|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed DNA polymerase activity|GO:0003887||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component epsilon DNA polymerase complex|GO:0008622|16212602|IPI  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process positive regulation of S phase of mitotic cell cycle|GO:0045750|16278345|IMP  go_function DNA-directed DNA polymerase activity|GO:0003887||ISS  product TIL1 (TILTED 1); DNA binding / DNA-directed DNA polymerase/ nucleic acid binding / nucleotide binding / zinc ion binding  note TILTED 1 (TIL1); FUNCTIONS IN: DNA-directed DNA polymerase activity, DNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: embryonic development ending in seed dormancy, positive regulation of S phase of mitotic cell cycle; LOCATED IN: apoplast, epsilon DNA polymerase complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1744 (InterPro:IPR013697), DNA-directed DNA polymerase, family B, exonuclease (InterPro:IPR006133), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), DNA-directed DNA polymerase, family B (InterPro:IPR006172), DNA-directed DNA polymerase, family B, conserved region (InterPro:IPR006134); BEST Arabidopsis thaliana protein match is: TIL2 (TILTED 2); DNA binding / DNA-directed DNA polymerase/ nucleic acid binding / nucleotide binding / zinc ion binding (TAIR:AT2G27120.1); Has 1471 Blast hits to 1240 proteins in 445 species: Archae - 242; Bacteria - 367; Metazoa - 283; Fungi - 195; Plants - 29; Viruses - 51; Other Eukaryotes - 304 (source: NCBI BLink).  protein_id AT1G08260.1p  transcript_id AT1G08260.1  protein_id AT1G08260.1p  transcript_id AT1G08260.1  
At1g08270	chr1:002606957	0.0	C/2606957-2607337	AT1G08270.1  CDS  gene_syn T23G18.12, T23G18_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: MIT (InterPro:IPR007330); BEST Arabidopsis thaliana protein match is: SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1); ATP binding / nucleoside-triphosphatase/ nucleotide binding (TAIR:AT2G27600.1); Has 807 Blast hits to 807 proteins in 179 species: Archae - 25; Bacteria - 0; Metazoa - 434; Fungi - 97; Plants - 114; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).  protein_id AT1G08270.1p  transcript_id AT1G08270.1  protein_id AT1G08270.1p  transcript_id AT1G08270.1  
At1g08270	chr1:002606977	0.0	C/2606977-2607337,2606848-2606885	AT1G08270.2  CDS  gene_syn T23G18.12, T23G18_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: MIT (InterPro:IPR007330); BEST Arabidopsis thaliana protein match is: SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1); ATP binding / nucleoside-triphosphatase/ nucleotide binding (TAIR:AT2G27600.1); Has 818 Blast hits to 818 proteins in 195 species: Archae - 70; Bacteria - 0; Metazoa - 385; Fungi - 107; Plants - 112; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).  protein_id AT1G08270.2p  transcript_id AT1G08270.2  protein_id AT1G08270.2p  transcript_id AT1G08270.2  
At1g08280	chr1:002608408	0.0	W/2608408-2609604	AT1G08280.1  CDS  gene_syn T23G18.14, T23G18_14  go_component endomembrane system|GO:0012505||IEA  go_component integral to Golgi membrane|GO:0030173||IEA  go_process protein amino acid glycosylation|GO:0006486||IEA  go_function sialyltransferase activity|GO:0008373||IEA  go_component membrane|GO:0016020||ISS  go_function sialyltransferase activity|GO:0008373||ISS  product glycosyl transferase family 29 protein / sialyltransferase family protein  note glycosyl transferase family 29 protein / sialyltransferase family protein; FUNCTIONS IN: sialyltransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: endomembrane system, integral to Golgi membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Sialyltransferase (InterPro:IPR012163), Glycosyl transferase, family 29 (InterPro:IPR001675); Has 1982 Blast hits to 1970 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 1819; Fungi - 0; Plants - 92; Viruses - 14; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT1G08280.1p  transcript_id AT1G08280.1  protein_id AT1G08280.1p  transcript_id AT1G08280.1  
At1g08290	chr1:002612593	0.0	C/2612593-2613180,2610680-2611105	AT1G08290.1  CDS  gene_syn T23G18.15, T23G18_15  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) protein (WIP3)  note zinc finger (C2H2 type) protein (WIP3); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: NTT (NO TRANSMITTING TRACT); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT3G57670.1); Has 34395 Blast hits to 14992 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 33070; Fungi - 69; Plants - 379; Viruses - 0; Other Eukaryotes - 877 (source: NCBI BLink).  protein_id AT1G08290.1p  transcript_id AT1G08290.1  protein_id AT1G08290.1p  transcript_id AT1G08290.1  
At1g08300	chr1:002614774	0.0	W/2614774-2614904,2615003-2615426,2615518-2615855,2616035-2616548,2616699-2616812,2617757-2618350,2618615-2618652,2618736-2618823	AT1G08300.1  CDS  gene_syn T23G18.16, T23G18_16  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: ATP binding (TAIR:AT4G13750.1); Has 55 Blast hits to 51 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G08300.1p  transcript_id AT1G08300.1  protein_id AT1G08300.1p  transcript_id AT1G08300.1  
At1g08310	chr1:002619134	0.0	W/2619134-2619292,2619397-2619617,2619691-2619955,2620027-2620338	AT1G08310.2  CDS  gene_syn T23G18.18, T23G18_18  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product esterase/lipase/thioesterase family protein  note esterase/lipase/thioesterase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44510.1); Has 692 Blast hits to 691 proteins in 183 species: Archae - 0; Bacteria - 339; Metazoa - 55; Fungi - 17; Plants - 191; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT1G08310.2p  transcript_id AT1G08310.2  protein_id AT1G08310.2p  transcript_id AT1G08310.2  
At1g08310	chr1:002619134	0.0	W/2619134-2619292,2619406-2619617,2619691-2619955,2620027-2620338	AT1G08310.1  CDS  gene_syn T23G18.18, T23G18_18  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product esterase/lipase/thioesterase family protein  note esterase/lipase/thioesterase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44510.1); Has 686 Blast hits to 685 proteins in 202 species: Archae - 2; Bacteria - 342; Metazoa - 54; Fungi - 21; Plants - 193; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT1G08310.1p  transcript_id AT1G08310.1  protein_id AT1G08310.1p  transcript_id AT1G08310.1  
At1g08315	chr1:002620500	0.0	C/2620500-2621477	AT1G08315.1  CDS  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product armadillo/beta-catenin repeat family protein  note armadillo/beta-catenin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding / ubiquitin-protein ligase (TAIR:AT2G23140.1); Has 609 Blast hits to 606 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 30; Fungi - 6; Plants - 565; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G08315.1p  transcript_id AT1G08315.1  protein_id AT1G08315.1p  transcript_id AT1G08315.1  
At1g08320	chr1:002625603	0.0	C/2625603-2625725,2624885-2624923,2624665-2624724,2624256-2624333,2624048-2624096,2623671-2623942,2623228-2623449,2622292-2622434,2622113-2622200	AT1G08320.2  CDS  gene_syn T23G18.22  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  product bZIP family transcription factor  note bZIP family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP family transcription factor (TAIR:AT5G06839.1); Has 567 Blast hits to 566 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 32; Fungi - 9; Plants - 505; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G08320.2p  transcript_id AT1G08320.2  protein_id AT1G08320.2p  transcript_id AT1G08320.2  
At1g08320	chr1:002627345	0.0	C/2627345-2627451,2626774-2626868,2626190-2626272,2625603-2625812,2624885-2624923,2624665-2624724,2624256-2624333,2624048-2624096,2623671-2623942,2623228-2623449,2622292-2622434,2622113-2622200	AT1G08320.1  CDS  gene_syn T23G18.22  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  product bZIP family transcription factor  note bZIP family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP family transcription factor (TAIR:AT5G06839.1); Has 758 Blast hits to 757 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 28; Plants - 577; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT1G08320.1p  transcript_id AT1G08320.1  protein_id AT1G08320.1p  transcript_id AT1G08320.1  
At1g08320	chr1:002627345	0.0	C/2627345-2627451,2626774-2626868,2626190-2626272,2625603-2625812,2624885-2624923,2624665-2624724,2624256-2624333,2624048-2624096,2623671-2623942,2623228-2623449,2622292-2622434,2622113-2622200	AT1G08320.3  CDS  gene_syn T23G18.22  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  product bZIP family transcription factor  note bZIP family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP family transcription factor (TAIR:AT5G06839.1); Has 758 Blast hits to 757 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 28; Plants - 577; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT1G08320.3p  transcript_id AT1G08320.3  protein_id AT1G08320.3p  transcript_id AT1G08320.3  
At1g08340	chr1:002631308	0.0	W/2631308-2631432,2631530-2631770,2631857-2632087,2632271-2632669	AT1G08340.1  CDS  gene_syn T23G18.20, T23G18_20  go_component intracellular|GO:0005622||IEA  go_process signal transduction|GO:0007165||IEA  go_function Rac GTPase activator activity|GO:0030675||ISS  product rac GTPase activating protein, putative  note rac GTPase activating protein, putative; FUNCTIONS IN: Rac GTPase activator activity; INVOLVED IN: signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095), Rho GTPase activation protein (InterPro:IPR008936), RhoGAP (InterPro:IPR000198); BEST Arabidopsis thaliana protein match is: rac GTPase activating protein, putative (TAIR:AT5G22400.1); Has 28415 Blast hits to 13704 proteins in 473 species: Archae - 23; Bacteria - 456; Metazoa - 16450; Fungi - 2676; Plants - 1068; Viruses - 527; Other Eukaryotes - 7215 (source: NCBI BLink).  protein_id AT1G08340.1p  transcript_id AT1G08340.1  protein_id AT1G08340.1p  transcript_id AT1G08340.1  
At1g08350	chr1:002634523	0.0	C/2634523-2635055,2634288-2634419,2633995-2634151,2633412-2633899,2632970-2633186	AT1G08350.1  CDS  gene_syn T27G7.5, T27G7_5  go_component phragmoplast|GO:0009524|11115874|TAS  go_component integral to membrane|GO:0016021||ISS  go_process membrane fusion|GO:0006944|11591731|IMP  go_function SNAP receptor activity|GO:0005484|11591731|IPI  product endomembrane protein 70 family protein  note endomembrane protein 70 family protein; FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion; LOCATED IN: integral to membrane, phragmoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G37310.1); Has 976 Blast hits to 969 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 436; Fungi - 139; Plants - 223; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink).  protein_id AT1G08350.1p  transcript_id AT1G08350.1  protein_id AT1G08350.1p  transcript_id AT1G08350.1  
At1g08350	chr1:002635460	0.0	C/2635460-2635605,2635209-2635249,2634523-2635111,2634288-2634419,2633995-2634151,2633412-2633899,2632970-2633186	AT1G08350.2  CDS  gene_syn T27G7.5, T27G7_5  go_component phragmoplast|GO:0009524|11115874|TAS  go_component integral to membrane|GO:0016021||ISS  go_process membrane fusion|GO:0006944|11591731|IMP  go_function SNAP receptor activity|GO:0005484|11591731|IPI  product endomembrane protein 70 family protein  note endomembrane protein 70 family protein; FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion; LOCATED IN: integral to membrane, phragmoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G37310.1); Has 1031 Blast hits to 987 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 444; Fungi - 168; Plants - 231; Viruses - 0; Other Eukaryotes - 188 (source: NCBI BLink).  protein_id AT1G08350.2p  transcript_id AT1G08350.2  protein_id AT1G08350.2p  transcript_id AT1G08350.2  
At1g08360	chr1:002636231	0.0	W/2636231-2636235,2636648-2636867,2637087-2637252,2637435-2637694	AT1G08360.1  CDS  gene_syn T27G7.6, T27G7_6  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process RNA processing|GO:0006396||IEA  go_process translation|GO:0006412||IEA  go_function RNA binding|GO:0003723||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L10A (RPL10aA)  note 60S ribosomal protein L10A (RPL10aA); FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro:IPR016094); BEST Arabidopsis thaliana protein match is: PGY1 (PIGGYBACK1); RNA binding / structural constituent of ribosome (TAIR:AT2G27530.2); Has 2469 Blast hits to 2469 proteins in 759 species: Archae - 186; Bacteria - 980; Metazoa - 354; Fungi - 122; Plants - 236; Viruses - 0; Other Eukaryotes - 591 (source: NCBI BLink).  protein_id AT1G08360.1p  transcript_id AT1G08360.1  protein_id AT1G08360.1p  transcript_id AT1G08360.1  
At1g08370	chr1:002638355	0.0	W/2638355-2638513,2638594-2638634,2638722-2638771,2638907-2639051,2639253-2639309,2639461-2639575,2639766-2640245,2640311-2640367	AT1G08370.1  CDS  gene_syn DCP1, decapping 1  gene DCP1  function Encodes DCP1 involved in mRNA decapping. DCP1 forms a mRNA decapping complex with DCP2 (At5g13570) and VCS (VARICOSE) (At3g13300). However, unlike DCP2, DCP1 itself does not have mRNA decapping activity in vitro. DCP1, DCP2 and VCS colocalize in cytoplasmic loci, which are putative Arabidopsis mRNA processing bodies. Null mutants of DCP1, DCP2, and VCS accumulate capped mRNAs with a reduced degradation rate. These mutants also share a similar lethal phenotype at the seedling cotyledon stage, with disorganized veins, swollen root hairs, and altered epidermal cell morphology. The protein was shown by immunoprecipitation not to interact with DCP2.  go_component cytoplasmic mRNA processing body|GO:0000932|17158604|IDA  go_component cytoplasmic mRNA processing body|GO:0000932|17485080|NAS  go_component cytoplasm|GO:0005737|17485080|IDA  go_process deadenylation-independent decapping of nuclear-transcribed mRNA|GO:0031087|17158604|IDA  go_function protein homodimerization activity|GO:0042803|17485080|IPI  go_function m7G(5 )pppN diphosphatase activity|GO:0050072|17485080|IDA  product DCP1 (decapping 1); m7G(5 )pppN diphosphatase/ protein homodimerization  note decapping 1 (DCP1); FUNCTIONS IN: m7G(5 )pppN diphosphatase activity, protein homodimerization activity; INVOLVED IN: deadenylation-independent decapping of nuclear-transcribed mRNA; LOCATED IN: cytoplasmic mRNA processing body, cytoplasm; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dcp1-like decapping (InterPro:IPR010334); Has 3269 Blast hits to 2612 proteins in 312 species: Archae - 4; Bacteria - 200; Metazoa - 1226; Fungi - 491; Plants - 691; Viruses - 139; Other Eukaryotes - 518 (source: NCBI BLink).  protein_id AT1G08370.1p  transcript_id AT1G08370.1  protein_id AT1G08370.1p  transcript_id AT1G08370.1  
At1g08380	chr1:002641661	0.0	C/2641661-2641739,2641492-2641564,2641004-2641274	AT1G08380.1  CDS  gene_syn PSAO, PSI-O, T27G7.25, T27G7_25, photosystem I subunit O  gene PSAO  function Encodes subunit O of photosystem I.  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component photosystem I|GO:0009522|11801243|IDA  go_component thylakoid|GO:0009579|11801243|IDA  go_process response to salt stress|GO:0009651|11351099|IEP  go_process photosynthesis, light harvesting in photosystem I|GO:0009768|11801243|IC  go_function molecular_function|GO:0003674||ND  product PSAO (photosystem I subunit O)  note photosystem I subunit O (PSAO); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress, photosynthesis, light harvesting in photosystem I; LOCATED IN: thylakoid, photosystem I, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I PsaO (InterPro:IPR017498); Has 41 Blast hits to 41 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G08380.1p  transcript_id AT1G08380.1  protein_id AT1G08380.1p  transcript_id AT1G08380.1  
At1g08390	chr1:002642220	0.0	W/2642220-2642339,2642420-2642599,2642990-2643103	AT1G08390.1  CDS  gene_syn T27G7.27  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365); Has 43 Blast hits to 43 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 30; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G08390.1p  transcript_id AT1G08390.1  protein_id AT1G08390.1p  transcript_id AT1G08390.1  
At1g08400	chr1:002645711	0.0	C/2645711-2646005,2645539-2645628,2645378-2645466,2643348-2645288	AT1G08400.1  CDS  gene_syn T27G7.8, T27G7_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product chromosome structural maintenance protein-related  note chromosome structural maintenance protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RINT-1/TIP-1 (InterPro:IPR007528); BEST Arabidopsis thaliana protein match is: MAG2 (maigo2) (TAIR:AT3G47700.1); Has 98 Blast hits to 96 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 18; Plants - 22; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G08400.1p  transcript_id AT1G08400.1  protein_id AT1G08400.1p  transcript_id AT1G08400.1  
At1g08410	chr1:002646307	0.0	W/2646307-2646533,2646701-2646802,2646891-2646977,2647483-2647576,2647681-2647737,2647821-2647900,2647984-2649106	AT1G08410.1  CDS  gene_syn T27G7.9, T27G7_9  go_component intracellular|GO:0005622||IEA  go_function GTP binding|GO:0005525||IEA  go_process biological_process|GO:0008150||ND  go_function GTP binding|GO:0005525||ISS  product GTP-binding family protein  note GTP-binding family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding (InterPro:IPR005289), GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: GTP-binding family protein (TAIR:AT2G27200.1); Has 4350 Blast hits to 4264 proteins in 1043 species: Archae - 70; Bacteria - 2325; Metazoa - 543; Fungi - 319; Plants - 130; Viruses - 0; Other Eukaryotes - 963 (source: NCBI BLink).  protein_id AT1G08410.1p  transcript_id AT1G08410.1  protein_id AT1G08410.1p  transcript_id AT1G08410.1  
At1g08420	chr1:002649959	0.0	W/2649959-2650427,2650967-2651027,2651142-2651220,2651332-2651411,2651495-2651589,2651689-2651788,2651866-2651935,2652483-2652584,2652661-2652742,2652966-2653145,2653459-2653726,2653819-2654056,2654207-2654377,2654716-2654954,2655045-2655129,2655226-2655324,2655393-2655592,2655672-2655747,2656019-2656154,2656249-2656388,2656478-2656564	AT1G08420.1  CDS  gene_syn BRI1 SUPPRESSOR 1 (BSU1)-LIKE 2, BSL2, T27G7.10, T27G7_10  gene BSL2  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function phosphoprotein phosphatase activity|GO:0004721||IEA  go_function iron ion binding|GO:0005506||IEA  go_function hydrolase activity|GO:0016787||IEA  go_function manganese ion binding|GO:0030145||IEA  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product kelch repeat-containing protein / serine/threonine phosphoesterase family protein  note BRI1 SUPPRESSOR 1 (BSU1)-LIKE 2 (BSL2); FUNCTIONS IN: hydrolase activity, manganese ion binding, protein serine/threonine phosphatase activity, phosphoprotein phosphatase activity, iron ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, guard cell, cultured cell, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Metallophosphoesterase (InterPro:IPR004843), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Serine/threonine protein phosphatase, BSU1 (InterPro:IPR012391), Kelch-type beta propeller (InterPro:IPR015915), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: kelch repeat-containing serine/threonine phosphoesterase family protein (TAIR:AT2G27210.1); Has 8470 Blast hits to 6983 proteins in 414 species: Archae - 49; Bacteria - 256; Metazoa - 3431; Fungi - 1255; Plants - 1374; Viruses - 8; Other Eukaryotes - 2097 (source: NCBI BLink).  protein_id AT1G08420.1p  transcript_id AT1G08420.1  protein_id AT1G08420.1p  transcript_id AT1G08420.1  
At1g08430	chr1:002658800	0.0	W/2658800-2659010,2659133-2659273,2659407-2659679,2659774-2659895,2659983-2660126,2660439-2661029	AT1G08430.1  CDS  gene_syn ALMT1, ALUMINUM-ACTIVATED MALATE TRANSPORTER 1, ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1, ATALMT1, T27G7.11, T27G7_11  gene ALMT1  function Encodes a Al-activated malate efflux transporter. Is essential for aluminum tolerance but does not represent the major Al tolerance QTL. Staurosporine and calyculin A both block all changes in AtALMT1 gene expression (as a result malate release is totally inhibited).  go_component cellular_component|GO:0005575||ND  go_process response to aluminum ion|GO:0010044|16740662|IMP  go_process response to aluminum ion|GO:0010044|17885092|IEP  go_function malate transmembrane transporter activity|GO:0015140|16740662|IDA  product ALMT1 (ALUMINUM-ACTIVATED MALATE TRANSPORTER 1); malate transmembrane transporter  note ALUMINUM-ACTIVATED MALATE TRANSPORTER 1 (ALMT1); FUNCTIONS IN: malate transmembrane transporter activity; INVOLVED IN: response to aluminum ion; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0005 (InterPro:IPR006214); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G08440.1); Has 327 Blast hits to 326 proteins in 76 species: Archae - 0; Bacteria - 97; Metazoa - 0; Fungi - 6; Plants - 210; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G08430.1p  transcript_id AT1G08430.1  protein_id AT1G08430.1p  transcript_id AT1G08430.1  
At1g08440	chr1:002663027	0.0	W/2663027-2663228,2663370-2663510,2663684-2663956,2664158-2664279,2664395-2664538,2664720-2665343	AT1G08440.1  CDS  gene_syn T27G7.12, T27G7_12  product unknown protein  note CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0005 (InterPro:IPR006214); BEST Arabidopsis thaliana protein match is: ALMT1 (ALUMINUM-ACTIVATED MALATE TRANSPORTER 1); malate transmembrane transporter (TAIR:AT1G08430.1); Has 377 Blast hits to 376 proteins in 91 species: Archae - 0; Bacteria - 139; Metazoa - 0; Fungi - 4; Plants - 211; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G08440.1p  transcript_id AT1G08440.1  protein_id AT1G08440.1p  transcript_id AT1G08440.1  
At1g08450	chr1:002671689	0.0	C/2671689-2671800,2671289-2671396,2670607-2670799,2670159-2670255,2669822-2669878,2669648-2669695,2669374-2669460,2669226-2669283,2669066-2669133,2668696-2668791,2668468-2668524,2668288-2668374,2668135-2668167,2668008-2668019	AT1G08450.2  CDS  gene_syn CALRETICULIN 3, CRT3, T27G7.13, T27G7_13  gene CRT3  function Encodes calreticulin CRT3.  go_component endoplasmic reticulum|GO:0005783||IEA  go_component endomembrane system|GO:0012505||IEA  go_process protein folding|GO:0006457||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_function calcium ion binding|GO:0005509||ISS  product CRT3 (CALRETICULIN 3); calcium ion binding / unfolded protein binding  note CALRETICULIN 3 (CRT3); FUNCTIONS IN: unfolded protein binding, calcium ion binding; INVOLVED IN: protein folding; LOCATED IN: endomembrane system, endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Calreticulin/calnexin, P (InterPro:IPR009033), Calreticulin/calnexin (InterPro:IPR001580), Calreticulin/calnexin, conserved site (InterPro:IPR018124), Calreticulin (InterPro:IPR009169), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: CRT1 (CALRETICULIN 1); calcium ion binding / unfolded protein binding (TAIR:AT1G56340.2); Has 948 Blast hits to 940 proteins in 242 species: Archae - 0; Bacteria - 0; Metazoa - 551; Fungi - 103; Plants - 171; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).  protein_id AT1G08450.2p  transcript_id AT1G08450.2  protein_id AT1G08450.2p  transcript_id AT1G08450.2  
At1g08450	chr1:002671689	0.0	C/2671689-2671800,2671289-2671396,2670607-2670799,2670159-2670417,2669822-2669878,2669648-2669695,2669374-2669460,2669226-2669283,2669066-2669133,2668696-2668791,2668468-2668524,2668288-2668374,2668135-2668167,2668008-2668019	AT1G08450.1  CDS  gene_syn CALRETICULIN 3, CRT3, T27G7.13, T27G7_13  gene CRT3  function Encodes calreticulin CRT3.  go_component endoplasmic reticulum|GO:0005783||IEA  go_component endomembrane system|GO:0012505||IEA  go_process protein folding|GO:0006457||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_function calcium ion binding|GO:0005509||ISS  product CRT3 (CALRETICULIN 3); calcium ion binding / unfolded protein binding  note CALRETICULIN 3 (CRT3); FUNCTIONS IN: unfolded protein binding, calcium ion binding; INVOLVED IN: protein folding; LOCATED IN: endomembrane system, endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Calreticulin/calnexin, P (InterPro:IPR009033), Calreticulin/calnexin (InterPro:IPR001580), Calreticulin/calnexin, conserved site (InterPro:IPR018124), Calreticulin (InterPro:IPR009169), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: calreticulin 2 (CRT2) (TAIR:AT1G09210.1); Has 955 Blast hits to 955 proteins in 246 species: Archae - 0; Bacteria - 0; Metazoa - 553; Fungi - 107; Plants - 170; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).  protein_id AT1G08450.1p  transcript_id AT1G08450.1  protein_id AT1G08450.1p  transcript_id AT1G08450.1  
At1g08460	chr1:002672527	0.0	W/2672527-2672770,2672921-2673507,2674167-2674469	AT1G08460.1  CDS  gene_syn HDA08, HDA8, HISTONE DEACETYLASE 8, T27G7.14, T27G7_14  gene HDA08  go_component cellular_component|GO:0005575||ND  go_process histone deacetylation|GO:0016575||ISS  go_function histone deacetylase activity|GO:0004407|12466527|ISS  go_function histone deacetylase activity|GO:0004407||ISS  product HDA08; histone deacetylase  note HDA08; FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: histone deacetylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: HDA15; histone deacetylase (TAIR:AT3G18520.2); Has 6845 Blast hits to 6725 proteins in 846 species: Archae - 124; Bacteria - 2006; Metazoa - 1106; Fungi - 418; Plants - 273; Viruses - 0; Other Eukaryotes - 2918 (source: NCBI BLink).  protein_id AT1G08460.1p  transcript_id AT1G08460.1  protein_id AT1G08460.1p  transcript_id AT1G08460.1  
At1g08465	chr1:002676033	0.0	W/2676033-2676101,2678103-2678234,2678320-2678440,2678554-2678602,2678679-2678754,2679275-2679382	AT1G08465.1  CDS  gene_syn T27G7.15, YAB2, YABBY2  gene YAB2  function Member of the YABBY family of Arabidopsis proteins involved in the abaxial cell fate specification in lateral organs  go_component cellular_component|GO:0005575||ND  go_process abaxial cell fate specification|GO:0010158|10457020|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  product YAB2 (YABBY2); transcription factor  note YABBY2 (YAB2); FUNCTIONS IN: transcription factor activity; INVOLVED IN: abaxial cell fate specification; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon primordium, petal primordium, gynoecium primordium; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: YAB5 (YABBY5); transcription factor (TAIR:AT2G26580.2); Has 328 Blast hits to 326 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 317; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G08465.1p  transcript_id AT1G08465.1  protein_id AT1G08465.1p  transcript_id AT1G08465.1  
At1g08470	chr1:002683652	0.0	C/2683652-2683977,2683299-2683574,2682869-2683036,2682262-2682664	AT1G08470.1  CDS  gene_syn T27G7.16, T27G7_16  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biosynthetic process|GO:0009058||IEA  go_function strictosidine synthase activity|GO:0016844||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process alkaloid biosynthetic process|GO:0009821||ISS  go_function strictosidine synthase activity|GO:0016844||ISS  product strictosidine synthase family protein  note strictosidine synthase family protein; FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: alkaloid biosynthetic process, biosynthetic process; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Strictosidine synthase, conserved region (InterPro:IPR018119), Strictosidine synthase (InterPro:IPR004141), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: strictosidine synthase family protein (TAIR:AT5G22020.1); Has 898 Blast hits to 891 proteins in 185 species: Archae - 1; Bacteria - 239; Metazoa - 198; Fungi - 13; Plants - 301; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).  protein_id AT1G08470.1p  transcript_id AT1G08470.1  protein_id AT1G08470.1p  transcript_id AT1G08470.1  
At1g08480	chr1:002684340	0.0	W/2684340-2684519,2684881-2684983,2685250-2685395	AT1G08480.1  CDS  gene_syn T27G7.26  go_component mitochondrion|GO:0005739|15276431|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane, plastid, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; Has 22 Blast hits to 22 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G08480.1p  transcript_id AT1G08480.1  protein_id AT1G08480.1p  transcript_id AT1G08480.1  
At1g08490	chr1:002688350	0.0	C/2688350-2688547,2687966-2688259,2687704-2687890,2687449-2687594,2687295-2687367,2687115-2687178,2686936-2687035,2686673-2686831,2685980-2686150	AT1G08490.1  CDS  gene_syn ATCPNIFS, ATNFS2, ATSUFS, CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE, CPNIFS, CYSTEINE DESULFURASE, SUFS, T27G7.17, T27G7_17  gene CPNIFS  function Chloroplastic NifS-like protein that can catalyze the conversion of cysteine into alanine and elemental sulfur (S(0)) and of selenocysteine into alanine and elemental Se (Se(0)). Overexpression enhances selenium tolerance and accumulation.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|12427997|IDA  go_process selenium metabolic process|GO:0001887|12427997|IDA  go_process sulfur metabolic process|GO:0006790|12427997|IDA  go_process response to selenium ion|GO:0010269|16244144|IMP  go_process iron incorporation into metallo-sulfur cluster|GO:0018283|15480755|IDA  go_function transaminase activity|GO:0008483||ISS  go_function selenocysteine lyase activity|GO:0009000|12427997|IDA  go_function cysteine desulfurase activity|GO:0031071|12427997|IDA  product CPNIFS (CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE); cysteine desulfurase/ selenocysteine lyase/ transaminase  note CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE (CPNIFS); FUNCTIONS IN: transaminase activity, selenocysteine lyase activity, cysteine desulfurase activity; INVOLVED IN: response to selenium ion, iron incorporation into metallo-sulfur cluster, sulfur metabolic process, selenium metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase, class V/Cysteine desulfurase (InterPro:IPR000192), Cysteine desulfurase, SufS (InterPro:IPR010970), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: NFS1; ATP binding / cysteine desulfurase/ transaminase (TAIR:AT5G65720.1); Has 14713 Blast hits to 14706 proteins in 1595 species: Archae - 222; Bacteria - 8040; Metazoa - 313; Fungi - 249; Plants - 120; Viruses - 1; Other Eukaryotes - 5768 (source: NCBI BLink).  protein_id AT1G08490.1p  transcript_id AT1G08490.1  protein_id AT1G08490.1p  transcript_id AT1G08490.1  
At1g08500	chr1:002689110	0.0	W/2689110-2689302,2689388-2689881	AT1G08500.1  CDS  gene_syn T27G7.18, T27G7_18  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function copper ion binding|GO:0005507||ISS  product plastocyanin-like domain-containing protein  note plastocyanin-like domain-containing protein; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); Has 338 Blast hits to 336 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 338; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G08500.1p  transcript_id AT1G08500.1  protein_id AT1G08500.1p  transcript_id AT1G08500.1  
At1g08510	chr1:002692912	0.0	C/2692912-2693409,2692697-2692830,2692356-2692469,2691957-2692128,2691546-2691866	AT1G08510.1  CDS  gene_syn FATB, T27G7.19, T27G7_19, fatty acyl-ACP thioesterases B  gene FATB  function Encodes an acyl-acyl carrier protein thioesterase. Hydrolyzes primarily saturated acyl-ACPs with chain lengths that vary between 8 and 18 carbons. Involved in saturated fatty acid synthesis. Nuclear-encoded, plastid-targeted globular protein that is functional as dimer.  go_component plastid|GO:0009536|15531590|TAS  go_process fatty acid biosynthetic process|GO:0006633|12671095|IMP  go_process fatty acid biosynthetic process|GO:0006633||ISS  go_function acyl carrier activity|GO:0000036|12061798|IDA  go_function acyl carrier activity|GO:0000036||ISS  go_function acyl-[acyl-carrier-protein] hydrolase activity|GO:0016297|12061798|IDA  product FATB (fatty acyl-ACP thioesterases B); acyl carrier/ acyl-[acyl-carrier-protein] hydrolase  note fatty acyl-ACP thioesterases B (FATB); FUNCTIONS IN: acyl-[acyl-carrier-protein] hydrolase activity, acyl carrier activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acyl-ACP thioesterase (InterPro:IPR002864); BEST Arabidopsis thaliana protein match is: AtFaTA (Arabidopsis FatA acyl-ACP thioesterase); acyl carrier/ acyl-[acyl-carrier-protein] hydrolase (TAIR:AT3G25110.1); Has 601 Blast hits to 601 proteins in 229 species: Archae - 0; Bacteria - 378; Metazoa - 2; Fungi - 0; Plants - 212; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G08510.1p  transcript_id AT1G08510.1  protein_id AT1G08510.1p  transcript_id AT1G08510.1  
At1g08520	chr1:002696538	0.0	W/2696538-2696810,2697015-2697193,2697283-2697367,2697453-2697769,2697872-2697995,2698111-2698203,2698627-2698722,2698971-2699114,2699194-2699400,2699467-2699622,2699813-2699920,2700021-2700155,2700255-2700413,2700518-2700638,2700734-2700819	AT1G08520.1  CDS  gene_syn CHLD, PDE166, PIGMENT DEFECTIVE EMBRYO 166, T27G7.20, T27G7_20  gene CHLD  go_component chloroplast|GO:0009507|18431481|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function magnesium chelatase activity|GO:0016851||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component magnesium chelatase complex|GO:0010007|15815918|TAS  go_process chlorophyll biosynthetic process|GO:0015995|9418040|TAS  product CHLD; ATP binding / magnesium chelatase/ nucleoside-triphosphatase/ nucleotide binding  note CHLD; FUNCTIONS IN: magnesium chelatase activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: magnesium chelatase complex, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Magnesium chelatase, ChlI subunit (InterPro:IPR000523), Magnesium chelatase, ATPase subunit D (InterPro:IPR011776), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: CHLI1; ATPase/ magnesium chelatase (TAIR:AT4G18480.1); Has 13256 Blast hits to 6476 proteins in 961 species: Archae - 137; Bacteria - 2462; Metazoa - 7013; Fungi - 432; Plants - 359; Viruses - 193; Other Eukaryotes - 2660 (source: NCBI BLink).  protein_id AT1G08520.1p  transcript_id AT1G08520.1  protein_id AT1G08520.1p  transcript_id AT1G08520.1  
At1g08530	chr1:002701252	0.0	W/2701252-2701593,2701692-2701742,2702262-2702395,2702581-2702681,2702807-2702952	AT1G08530.1  CDS  gene_syn T27G7.21  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09995.3); Has 90 Blast hits to 90 proteins in 36 species: Archae - 0; Bacteria - 50; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G08530.1p  transcript_id AT1G08530.1  protein_id AT1G08530.1p  transcript_id AT1G08530.1  
At1g08540	chr1:002703461	0.0	W/2703461-2703539,2704080-2704261,2704495-2705091,2705537-2705767,2705879-2706019,2706106-2706306,2706409-2706696	AT1G08540.1  CDS  gene_syn ABC1, ATSIG1, ATSIG2, PUTATIVE PLASTID RNA POLYMERASE SIGMA-SUBUNIT, RNA POLYMERASE SIGMA SUBUNIT 1, RNA POLYMERASE SIGMA SUBUNIT 2, SIG1, SIG2, SIGA, SIGB, SIGMA FACTOR 1, SIGMA FACTOR 2, SIGMA FACTOR B, T27G7.22  gene SIG2  function Enodes a subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme. SIG1 is induced by red and blue light.  go_component chloroplast|GO:0009507|10555304|IDA  go_process transcription initiation|GO:0006352|9280303|TAS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to blue light|GO:0009637|18532976|IGI  go_process response to red light|GO:0010114|18532976|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  go_function sigma factor activity|GO:0016987|9280303|ISS  product SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor  note RNA POLYMERASE SIGMA SUBUNIT 2 (SIG2); FUNCTIONS IN: DNA-directed RNA polymerase activity, transcription factor activity, sigma factor activity, DNA binding; INVOLVED IN: response to blue light, response to red light, regulation of transcription, DNA-dependent, transcription initiation; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor, region 2 (InterPro:IPR013325), Winged helix repressor DNA-binding (InterPro:IPR011991), RNA polymerase sigma-70 region 3 (InterPro:IPR007624), RNA polymerase sigma-70 (InterPro:IPR014284), RNA polymerase sigma factor, regions 3 and 4 (InterPro:IPR013324), RNA polymerase sigma-70 region 1.2 (InterPro:IPR009042), RNA polymerase sigma factor, SigB/SigC/SigD, plastid (InterPro:IPR016262), RNA polymerase sigma-70 region 2 (InterPro:IPR007627), RNA polymerase sigma-70 region 4 (InterPro:IPR007630), RNA polymerase sigma-70 factor (InterPro:IPR000943); BEST Arabidopsis thaliana protein match is: SIGF (RNA POLYMERASE SIGMA-SUBUNIT F); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor (TAIR:AT2G36990.1); Has 16604 Blast hits to 16542 proteins in 1586 species: Archae - 0; Bacteria - 9750; Metazoa - 4; Fungi - 2; Plants - 153; Viruses - 7; Other Eukaryotes - 6688 (source: NCBI BLink).  protein_id AT1G08540.1p  transcript_id AT1G08540.1  protein_id AT1G08540.1p  transcript_id AT1G08540.1  
At1g08550	chr1:002707462	0.0	W/2707462-2707677,2707755-2707921,2708187-2708283,2708388-2708782,2708874-2709387	AT1G08550.1  CDS  gene_syn ARABIDOPSIS VIOLAXANTHIN DE-EPOXIDASE 1, AVDE1, F22O13.3, F22O13_3, NON-PHOTOCHEMICAL QUENCHING 1, NPQ1, VIOLAXANTHIN DE-EPOXIDASE PRECURSOR  gene NPQ1  function Violaxanthin deepoxidase involved in xanthophyll cycle.Two major consequences of the npq1 mutation are the absence of zeaxanthin formation in strong light and the partial inhibition of the quenching of singlet excited chlorophylls in the photosystem II light-harvesting complex  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|TAS  go_component chloroplast photosystem II|GO:0030095|11058750|TAS  go_process fatty acid metabolic process|GO:0006631|16258032|IGI  go_process response to heat|GO:0009408|15923322|IMP  go_process xanthophyll cycle|GO:0010028|10588066|IMP  go_process chlorophyll metabolic process|GO:0015994|16258032|IGI  go_process xanthophyll metabolic process|GO:0016122|11058750|TAS  go_function violaxanthin de-epoxidase activity|GO:0046422|10588066|IMP  product NPQ1 (NON-PHOTOCHEMICAL QUENCHING 1); violaxanthin de-epoxidase  note NON-PHOTOCHEMICAL QUENCHING 1 (NPQ1); FUNCTIONS IN: violaxanthin de-epoxidase activity; INVOLVED IN: response to heat, fatty acid metabolic process, chlorophyll metabolic process, xanthophyll metabolic process, xanthophyll cycle; LOCATED IN: thylakoid lumen, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lipocalin (InterPro:IPR002345), Calycin (InterPro:IPR012674), Calycin-like (InterPro:IPR011038), Violaxanthin de-epoxidase (InterPro:IPR010788); BEST Arabidopsis thaliana protein match is: violaxanthin de-epoxidase-related (TAIR:AT2G21860.1); Has 182 Blast hits to 179 proteins in 40 species: Archae - 0; Bacteria - 8; Metazoa - 2; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT1G08550.1p  transcript_id AT1G08550.1  protein_id AT1G08550.1p  transcript_id AT1G08550.1  
At1g08550	chr1:002707462	0.0	W/2707462-2707677,2707755-2707921,2708187-2708283,2708388-2708782,2708874-2709387	AT1G08550.2  CDS  gene_syn ARABIDOPSIS VIOLAXANTHIN DE-EPOXIDASE 1, AVDE1, F22O13.3, F22O13_3, NON-PHOTOCHEMICAL QUENCHING 1, NPQ1, VIOLAXANTHIN DE-EPOXIDASE PRECURSOR  gene NPQ1  function Violaxanthin deepoxidase involved in xanthophyll cycle.Two major consequences of the npq1 mutation are the absence of zeaxanthin formation in strong light and the partial inhibition of the quenching of singlet excited chlorophylls in the photosystem II light-harvesting complex  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|TAS  go_component chloroplast photosystem II|GO:0030095|11058750|TAS  go_process fatty acid metabolic process|GO:0006631|16258032|IGI  go_process response to heat|GO:0009408|15923322|IMP  go_process xanthophyll cycle|GO:0010028|10588066|IMP  go_process chlorophyll metabolic process|GO:0015994|16258032|IGI  go_process xanthophyll metabolic process|GO:0016122|11058750|TAS  go_function violaxanthin de-epoxidase activity|GO:0046422|10588066|IMP  product NPQ1 (NON-PHOTOCHEMICAL QUENCHING 1); violaxanthin de-epoxidase  note NON-PHOTOCHEMICAL QUENCHING 1 (NPQ1); FUNCTIONS IN: violaxanthin de-epoxidase activity; INVOLVED IN: response to heat, fatty acid metabolic process, chlorophyll metabolic process, xanthophyll metabolic process, xanthophyll cycle; LOCATED IN: chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lipocalin (InterPro:IPR002345), Calycin (InterPro:IPR012674), Calycin-like (InterPro:IPR011038), Violaxanthin de-epoxidase (InterPro:IPR010788); BEST Arabidopsis thaliana protein match is: violaxanthin de-epoxidase-related (TAIR:AT2G21860.1); Has 182 Blast hits to 179 proteins in 40 species: Archae - 0; Bacteria - 8; Metazoa - 2; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT1G08550.2p  transcript_id AT1G08550.2  protein_id AT1G08550.2p  transcript_id AT1G08550.2  
At1g08560	chr1:002709778	0.0	C/2709778-2710710	AT1G08560.1  CDS  gene_syn ATSYP111, F22O13.4, F22O13_4, KN, KNOLLE, SYNTAXIN OF PLANTS 111, SYP111  gene SYP111  function member of SYP11 Gene Family  go_component plasma membrane|GO:0005886|17644812|IDA  go_component phragmoplast|GO:0009524|8548827|IDA  go_component phragmoplast|GO:0009524|9396754|IDA  go_process intracellular protein transport|GO:0006886|11115874|TAS  go_process membrane fusion|GO:0006944|11115874|TAS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function SNAP receptor activity|GO:0005484|11115874|TAS  product SYP111 (SYNTAXIN OF PLANTS 111); SNAP receptor  note SYNTAXIN OF PLANTS 111 (SYP111); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion, intracellular protein transport, response to cyclopentenone; LOCATED IN: plasma membrane, phragmoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: SYP124 (SYNTAXIN OF PLANTS 124); SNAP receptor (TAIR:AT1G61290.1); Has 1902 Blast hits to 1895 proteins in 215 species: Archae - 9; Bacteria - 30; Metazoa - 976; Fungi - 305; Plants - 265; Viruses - 1; Other Eukaryotes - 316 (source: NCBI BLink).  protein_id AT1G08560.1p  transcript_id AT1G08560.1  protein_id AT1G08560.1p  transcript_id AT1G08560.1  
At1g08570	chr1:002713059	0.0	W/2713059-2713142,2713236-2713295,2713547-2713723,2713809-2713973,2714064-2714312	AT1G08570.2  CDS  gene_syn ACHT4, ATYPICAL CYS HIS RICH THIOREDOXIN 4  gene ACHT4  function Encodes a member of the thioredoxin family protein. Located in the chloroplast. Shows high activity towards the chloroplast 2-Cys peroxiredoxin A, and poor activity towards the chloroplast NADP-malate dehydrogenase.  go_process cell redox homeostasis|GO:0045454||IEA  go_component chloroplast|GO:0009507|19109414|IDA  go_component chloroplast stroma|GO:0009570|19109414|IDA  go_component chloroplast membrane|GO:0031969|19109414|IDA  go_function oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor|GO:0016671|19109414|IDA  product ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4); oxidoreductase, acting on sulfur group of donors, disulfide as acceptor  note ATYPICAL CYS HIS RICH THIOREDOXIN 4 (ACHT4); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ACHT3 (ATYPICAL CYS HIS RICH THIOREDOXIN 3) (TAIR:AT2G33270.1); Has 1764 Blast hits to 1758 proteins in 364 species: Archae - 10; Bacteria - 288; Metazoa - 522; Fungi - 259; Plants - 353; Viruses - 3; Other Eukaryotes - 329 (source: NCBI BLink).  protein_id AT1G08570.2p  transcript_id AT1G08570.2  protein_id AT1G08570.2p  transcript_id AT1G08570.2  
At1g08570	chr1:002713059	0.0	W/2713059-2713295,2713547-2713723,2713809-2713973,2714064-2714312	AT1G08570.1  CDS  gene_syn ACHT4, ATYPICAL CYS HIS RICH THIOREDOXIN 4  gene ACHT4  function Encodes a member of the thioredoxin family protein. Located in the chloroplast. Shows high activity towards the chloroplast 2-Cys peroxiredoxin A, and poor activity towards the chloroplast NADP-malate dehydrogenase.  go_process cell redox homeostasis|GO:0045454||IEA  go_component chloroplast|GO:0009507|19109414|IDA  go_component chloroplast stroma|GO:0009570|19109414|IDA  go_component chloroplast membrane|GO:0031969|19109414|IDA  go_function oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor|GO:0016671|19109414|IDA  product ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4); oxidoreductase, acting on sulfur group of donors, disulfide as acceptor  note ATYPICAL CYS HIS RICH THIOREDOXIN 4 (ACHT4); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336), Thioredoxin domain (InterPro:IPR013766); BEST Arabidopsis thaliana protein match is: ACHT3 (ATYPICAL CYS HIS RICH THIOREDOXIN 3) (TAIR:AT2G33270.1); Has 1763 Blast hits to 1757 proteins in 364 species: Archae - 10; Bacteria - 288; Metazoa - 522; Fungi - 259; Plants - 352; Viruses - 3; Other Eukaryotes - 329 (source: NCBI BLink).  protein_id AT1G08570.1p  transcript_id AT1G08570.1  protein_id AT1G08570.1p  transcript_id AT1G08570.1  
At1g08570	chr1:002713604	0.0	W/2713604-2713723,2713809-2713973,2714064-2714312	AT1G08570.3  CDS  gene_syn ACHT4, ATYPICAL CYS HIS RICH THIOREDOXIN 4  gene ACHT4  function Encodes a member of the thioredoxin family protein. Located in the chloroplast. Shows high activity towards the chloroplast 2-Cys peroxiredoxin A, and poor activity towards the chloroplast NADP-malate dehydrogenase.  go_process cell redox homeostasis|GO:0045454||IEA  go_component chloroplast|GO:0009507|19109414|IDA  go_component chloroplast stroma|GO:0009570|19109414|IDA  go_component chloroplast membrane|GO:0031969|19109414|IDA  go_function oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor|GO:0016671|19109414|IDA  product ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4); oxidoreductase, acting on sulfur group of donors, disulfide as acceptor  note ATYPICAL CYS HIS RICH THIOREDOXIN 4 (ACHT4); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ACHT3 (ATYPICAL CYS HIS RICH THIOREDOXIN 3) (TAIR:AT2G33270.1); Has 1685 Blast hits to 1680 proteins in 355 species: Archae - 10; Bacteria - 272; Metazoa - 515; Fungi - 258; Plants - 349; Viruses - 3; Other Eukaryotes - 278 (source: NCBI BLink).  protein_id AT1G08570.3p  transcript_id AT1G08570.3  protein_id AT1G08570.3p  transcript_id AT1G08570.3  
At1g08570	chr1:002713604	0.0	W/2713604-2713723,2713809-2713973,2714064-2714312	AT1G08570.4  CDS  gene_syn ACHT4, ATYPICAL CYS HIS RICH THIOREDOXIN 4  gene ACHT4  function Encodes a member of the thioredoxin family protein. Located in the chloroplast. Shows high activity towards the chloroplast 2-Cys peroxiredoxin A, and poor activity towards the chloroplast NADP-malate dehydrogenase.  go_process cell redox homeostasis|GO:0045454||IEA  go_component chloroplast|GO:0009507|19109414|IDA  go_component chloroplast stroma|GO:0009570|19109414|IDA  go_component chloroplast membrane|GO:0031969|19109414|IDA  go_function oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor|GO:0016671|19109414|IDA  product ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4); oxidoreductase, acting on sulfur group of donors, disulfide as acceptor  note ATYPICAL CYS HIS RICH THIOREDOXIN 4 (ACHT4); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ACHT3 (ATYPICAL CYS HIS RICH THIOREDOXIN 3) (TAIR:AT2G33270.1); Has 1685 Blast hits to 1680 proteins in 355 species: Archae - 10; Bacteria - 272; Metazoa - 515; Fungi - 258; Plants - 349; Viruses - 3; Other Eukaryotes - 278 (source: NCBI BLink).  protein_id AT1G08570.4p  transcript_id AT1G08570.4  protein_id AT1G08570.4p  transcript_id AT1G08570.4  
At1g08580	chr1:002716190	0.0	C/2716190-2716351,2715943-2716009,2715474-2715554,2715296-2715357	AT1G08580.1  CDS  gene_syn F22O13.6, F22O13_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 25 Blast hits to 25 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G08580.1p  transcript_id AT1G08580.1  protein_id AT1G08580.1p  transcript_id AT1G08580.1  
At1g08590	chr1:002718859	0.0	W/2718859-2721948	AT1G08590.1  CDS  gene_syn F22O13.7, F22O13_7  function similar to CLV1-like leucine rich repeat transmembrane receptor-like protein kinase (Ipomoea nil) (U77888)  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product CLAVATA1 receptor kinase (CLV1)  note CLAVATA1 receptor kinase (CLV1); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root, leaf; EXPRESSED DURING: LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT4G28650.1); Has 163897 Blast hits to 104127 proteins in 2339 species: Archae - 91; Bacteria - 13084; Metazoa - 64339; Fungi - 7919; Plants - 56105; Viruses - 427; Other Eukaryotes - 21932 (source: NCBI BLink).  protein_id AT1G08590.1p  transcript_id AT1G08590.1  protein_id AT1G08590.1p  transcript_id AT1G08590.1  
At1g08600	chr1:002724562	0.0	W/2724562-2724876,2724961-2725023,2725122-2725217,2725300-2725392,2725503-2725693,2725778-2726021,2726533-2726646,2726950-2727033,2727448-2727801,2728250-2728563,2728659-2728749,2728855-2729064,2729216-2729335,2729475-2729641,2730002-2730143,2730402-2730551,2730636-2730691,2730782-2731079,2731223-2731352,2731763-2731818,2731933-2732159,2732240-2732443,2732527-2732605,2732693-2732952,2733050-2733431	AT1G08600.1  CDS  gene_syn ATRX, CHR20, F22O13.8, F22O13_8  gene ATRX  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function DNA binding|GO:0003677||ISS  go_function helicase activity|GO:0004386||ISS  go_function ATP binding|GO:0005524||ISS  product ATRX; ATP binding / DNA binding / helicase/ nucleic acid binding  note ATRX; FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54); ATP binding / DNA binding / helicase/ nucleic acid binding (TAIR:AT3G19210.1); Has 24592 Blast hits to 17596 proteins in 1190 species: Archae - 213; Bacteria - 3805; Metazoa - 8759; Fungi - 3544; Plants - 1161; Viruses - 420; Other Eukaryotes - 6690 (source: NCBI BLink).  protein_id AT1G08600.1p  transcript_id AT1G08600.1  protein_id AT1G08600.1p  transcript_id AT1G08600.1  
At1g08610	chr1:002733788	0.0	C/2733788-2735467	AT1G08610.1  CDS  gene_syn F22O13.9, F22O13_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G09900.1); Has 19965 Blast hits to 5457 proteins in 167 species: Archae - 5; Bacteria - 16; Metazoa - 328; Fungi - 289; Plants - 18418; Viruses - 0; Other Eukaryotes - 909 (source: NCBI BLink).  protein_id AT1G08610.1p  transcript_id AT1G08610.1  protein_id AT1G08610.1p  transcript_id AT1G08610.1  
At1g08620	chr1:002737554	0.0	W/2737554-2737865,2737958-2738029,2738161-2738238,2738325-2738852,2738949-2739176,2739586-2739747,2740058-2740426,2740828-2742094,2742184-2742287,2742635-2742832,2743059-2743370	AT1G08620.1  CDS  gene_syn F22O13.10, F22O13_10  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), FY-rich, C-terminal (InterPro:IPR003889), FY-rich, N-terminal (InterPro:IPR003888), Transcription factor jumonji, JmjN (InterPro:IPR003349), Zinc finger, C5HC2-type (InterPro:IPR004198), Transcription factor jumonji (InterPro:IPR013129), FY-rich, C-terminal subgroup (InterPro:IPR018516), FY-rich, N-terminal subgroup (InterPro:IPR018518); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT1G30810.1); Has 1549 Blast hits to 1191 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 970; Fungi - 292; Plants - 156; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).  protein_id AT1G08620.1p  transcript_id AT1G08620.1  protein_id AT1G08620.1p  transcript_id AT1G08620.1  
At1g08630	chr1:002745243	0.0	C/2745243-2745685,2745033-2745144,2744903-2744953,2744614-2744818,2744475-2744491,2744237-2744337,2744072-2744138,2743948-2743986	AT1G08630.5  CDS  gene_syn F22O13.11, F22O13_11, THA1, Threonine Aldolase 1  gene THA1  function Encodes a threonine aldolase, involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings.  go_component cellular_component|GO:0005575||ND  go_process threonine catabolic process|GO:0006567|17172352|IMP  go_function threonine aldolase activity|GO:0004793|17172352|IDA  go_function aldehyde-lyase activity|GO:0016832||ISS  product THA1 (Threonine Aldolase 1); aldehyde-lyase/ threonine aldolase  note Threonine Aldolase 1 (THA1); FUNCTIONS IN: threonine aldolase activity, aldehyde-lyase activity; INVOLVED IN: threonine catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aromatic amino acid beta-eliminating lyase/threonine aldolase (InterPro:IPR001597), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: THA2 (Threonine Aldolase 2); threonine aldolase (TAIR:AT3G04520.1); Has 2610 Blast hits to 2608 proteins in 665 species: Archae - 13; Bacteria - 1278; Metazoa - 83; Fungi - 152; Plants - 49; Viruses - 0; Other Eukaryotes - 1035 (source: NCBI BLink).  protein_id AT1G08630.5p  transcript_id AT1G08630.5  protein_id AT1G08630.5p  transcript_id AT1G08630.5  
At1g08630	chr1:002745243	0.0	C/2745243-2745685,2745033-2745144,2744903-2744953,2744614-2744818,2744475-2744533,2744237-2744337,2744072-2744138,2743948-2743986	AT1G08630.1  CDS  gene_syn F22O13.11, F22O13_11, THA1, Threonine Aldolase 1  gene THA1  function Encodes a threonine aldolase, involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings.  go_component cellular_component|GO:0005575||ND  go_process threonine catabolic process|GO:0006567|17172352|IMP  go_function threonine aldolase activity|GO:0004793|17172352|IDA  go_function aldehyde-lyase activity|GO:0016832||ISS  product THA1 (Threonine Aldolase 1); aldehyde-lyase/ threonine aldolase  note Threonine Aldolase 1 (THA1); FUNCTIONS IN: threonine aldolase activity, aldehyde-lyase activity; INVOLVED IN: threonine catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aromatic amino acid beta-eliminating lyase/threonine aldolase (InterPro:IPR001597), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: THA2 (Threonine Aldolase 2); threonine aldolase (TAIR:AT3G04520.1); Has 2796 Blast hits to 2792 proteins in 699 species: Archae - 15; Bacteria - 1381; Metazoa - 85; Fungi - 155; Plants - 49; Viruses - 0; Other Eukaryotes - 1111 (source: NCBI BLink).  protein_id AT1G08630.1p  transcript_id AT1G08630.1  protein_id AT1G08630.1p  transcript_id AT1G08630.1  
At1g08630	chr1:002745243	0.0	C/2745243-2745685,2745033-2745144,2744903-2744953,2744614-2744818,2744475-2744533,2744237-2744337,2744072-2744138,2743948-2743986	AT1G08630.2  CDS  gene_syn F22O13.11, F22O13_11, THA1, Threonine Aldolase 1  gene THA1  function Encodes a threonine aldolase, involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings.  go_component cellular_component|GO:0005575||ND  go_process threonine catabolic process|GO:0006567|17172352|IMP  go_function threonine aldolase activity|GO:0004793|17172352|IDA  go_function aldehyde-lyase activity|GO:0016832||ISS  product THA1 (Threonine Aldolase 1); aldehyde-lyase/ threonine aldolase  note Threonine Aldolase 1 (THA1); FUNCTIONS IN: threonine aldolase activity, aldehyde-lyase activity; INVOLVED IN: threonine catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aromatic amino acid beta-eliminating lyase/threonine aldolase (InterPro:IPR001597), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: THA2 (Threonine Aldolase 2); threonine aldolase (TAIR:AT3G04520.1); Has 2796 Blast hits to 2792 proteins in 699 species: Archae - 15; Bacteria - 1381; Metazoa - 85; Fungi - 155; Plants - 49; Viruses - 0; Other Eukaryotes - 1111 (source: NCBI BLink).  protein_id AT1G08630.2p  transcript_id AT1G08630.2  protein_id AT1G08630.2p  transcript_id AT1G08630.2  
At1g08630	chr1:002745243	0.0	C/2745243-2745685,2745033-2745144,2744903-2744953,2744614-2744818,2744475-2744533,2744237-2744337,2744072-2744138,2743948-2743986	AT1G08630.3  CDS  gene_syn F22O13.11, F22O13_11, THA1, Threonine Aldolase 1  gene THA1  function Encodes a threonine aldolase, involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings.  go_component cellular_component|GO:0005575||ND  go_process threonine catabolic process|GO:0006567|17172352|IMP  go_function threonine aldolase activity|GO:0004793|17172352|IDA  go_function aldehyde-lyase activity|GO:0016832||ISS  product THA1 (Threonine Aldolase 1); aldehyde-lyase/ threonine aldolase  note Threonine Aldolase 1 (THA1); FUNCTIONS IN: threonine aldolase activity, aldehyde-lyase activity; INVOLVED IN: threonine catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aromatic amino acid beta-eliminating lyase/threonine aldolase (InterPro:IPR001597), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: THA2 (Threonine Aldolase 2); threonine aldolase (TAIR:AT3G04520.1); Has 2796 Blast hits to 2792 proteins in 699 species: Archae - 15; Bacteria - 1381; Metazoa - 85; Fungi - 155; Plants - 49; Viruses - 0; Other Eukaryotes - 1111 (source: NCBI BLink).  protein_id AT1G08630.3p  transcript_id AT1G08630.3  protein_id AT1G08630.3p  transcript_id AT1G08630.3  
At1g08630	chr1:002745243	0.0	C/2745243-2745685,2745033-2745144,2744903-2744953,2744614-2744818,2744475-2744533,2744237-2744337,2744072-2744138,2743948-2743986	AT1G08630.4  CDS  gene_syn F22O13.11, F22O13_11, THA1, Threonine Aldolase 1  gene THA1  function Encodes a threonine aldolase, involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings.  go_component cellular_component|GO:0005575||ND  go_process threonine catabolic process|GO:0006567|17172352|IMP  go_function threonine aldolase activity|GO:0004793|17172352|IDA  go_function aldehyde-lyase activity|GO:0016832||ISS  product THA1 (Threonine Aldolase 1); aldehyde-lyase/ threonine aldolase  note Threonine Aldolase 1 (THA1); FUNCTIONS IN: threonine aldolase activity, aldehyde-lyase activity; INVOLVED IN: threonine catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aromatic amino acid beta-eliminating lyase/threonine aldolase (InterPro:IPR001597), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: THA2 (Threonine Aldolase 2); threonine aldolase (TAIR:AT3G04520.1); Has 2796 Blast hits to 2792 proteins in 699 species: Archae - 15; Bacteria - 1381; Metazoa - 85; Fungi - 155; Plants - 49; Viruses - 0; Other Eukaryotes - 1111 (source: NCBI BLink).  protein_id AT1G08630.4p  transcript_id AT1G08630.4  protein_id AT1G08630.4p  transcript_id AT1G08630.4  
At1g08640	chr1:002751079	0.0	C/2751079-2751209,2750679-2750778,2750489-2750593,2750315-2750392,2750170-2750225,2750019-2750076,2749676-2749801,2749482-2749577,2749191-2749262,2748714-2748776	AT1G08640.1  CDS  gene_syn F22O13.12, F22O13_12  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  product unknown protein  note unknown protein; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 54 Blast hits to 54 proteins in 19 species: Archae - 0; Bacteria - 17; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G08640.1p  transcript_id AT1G08640.1  protein_id AT1G08640.1p  transcript_id AT1G08640.1  
At1g08650	chr1:002752206	0.0	W/2752206-2753010,2753183-2753232	AT1G08650.1  CDS  gene_syn PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE, PPCK1  gene PPCK1  function Encodes a phosphoenolpyruvate carboxylase kinase that is expressed at highest levels in leaves. Expression is induced by light.  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_function protein serine/threonine kinase activity|GO:0004674|10571893|IDA  go_function kinase activity|GO:0016301||ISS  product PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE); kinase/ protein serine/threonine kinase  note PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE (PPCK1); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: PPCK2; kinase/ protein serine/threonine kinase (TAIR:AT3G04530.1); Has 88747 Blast hits to 87259 proteins in 2102 species: Archae - 70; Bacteria - 8396; Metazoa - 37190; Fungi - 8664; Plants - 16271; Viruses - 478; Other Eukaryotes - 17678 (source: NCBI BLink).  protein_id AT1G08650.1p  transcript_id AT1G08650.1  protein_id AT1G08650.1p  transcript_id AT1G08650.1  
At1g08660	chr1:002759572	0.0	C/2759572-2759677,2759406-2759485,2759159-2759245,2758988-2759065,2758817-2758908,2758531-2758732,2758319-2758409,2758134-2758192,2757805-2757953,2757584-2757683	AT1G08660.2  CDS  gene_syn F22O13.14, F22O13_14  go_process protein amino acid glycosylation|GO:0006486||IEA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component membrane|GO:0016020||ISS  go_function sialyltransferase activity|GO:0008373||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyl transferase family 29 protein / sialyltransferase family protein  note glycosyl transferase family 29 protein / sialyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, sialyltransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 29 (InterPro:IPR001675); BEST Arabidopsis thaliana protein match is: glycosyl transferase family 29 protein / sialyltransferase family protein (TAIR:AT3G48820.1); Has 1454 Blast hits to 1450 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 1323; Fungi - 0; Plants - 88; Viruses - 11; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT1G08660.2p  transcript_id AT1G08660.2  protein_id AT1G08660.2p  transcript_id AT1G08660.2  
At1g08660	chr1:002759572	0.0	C/2759572-2759677,2759406-2759485,2759159-2759245,2758988-2759065,2758817-2758908,2758531-2758732,2758319-2758409,2758134-2758192,2757805-2757953,2757602-2757683,2757116-2757514	AT1G08660.1  CDS  gene_syn F22O13.14, F22O13_14  go_process protein amino acid glycosylation|GO:0006486||IEA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component membrane|GO:0016020||ISS  go_function sialyltransferase activity|GO:0008373||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyl transferase family 29 protein / sialyltransferase family protein  note glycosyl transferase family 29 protein / sialyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, sialyltransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 29 (InterPro:IPR001675); BEST Arabidopsis thaliana protein match is: glycosyl transferase family 29 protein / sialyltransferase family protein (TAIR:AT3G48820.1); Has 1458 Blast hits to 1454 proteins in 69 species: Archae - 0; Bacteria - 0; Metazoa - 1325; Fungi - 0; Plants - 90; Viruses - 11; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT1G08660.1p  transcript_id AT1G08660.1  protein_id AT1G08660.1p  transcript_id AT1G08660.1  
At1g08670	chr1:002761433	0.0	C/2761433-2761551,2761127-2761249,2760419-2760872	AT1G08670.1  CDS  gene_syn F22O13.15, F22O13_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function binding|GO:0005488||ISS  product epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related  note epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Epsin, N-terminal (InterPro:IPR001026), Epsin-like, N-terminal (InterPro:IPR013809), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (TAIR:AT3G46540.1); Has 584 Blast hits to 584 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 340; Fungi - 146; Plants - 68; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G08670.1p  transcript_id AT1G08670.1  protein_id AT1G08670.1p  transcript_id AT1G08670.1  
At1g08680	chr1:002762820	0.0	W/2762820-2762918,2763298-2763359,2764236-2764323,2764410-2764471,2764593-2764689,2765056-2765200,2765327-2765451,2765576-2766175,2766506-2766643,2766726-2766821,2766945-2767031,2767612-2767747,2768060-2768093,2768333-2768387	AT1G08680.3  CDS  gene_syn AGD14, ARF GAP-like zinc finger-containing protein ZiGA4, ARF-GAP domain 14, AT1G08690, F22O13.16, F22O13_16, ZIGA4  gene ZIGA4  function A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD14 belongs to the class 4, together with AGD15.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process regulation of ARF GTPase activity|GO:0032312||IEA  go_function ARF GTPase activator activity|GO:0008060||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_function DNA binding|GO:0003677||ISS  product ZIGA4 (ARF GAP-like zinc finger-containing protein ZiGA4); ARF GTPase activator/ DNA binding / zinc ion binding  note ARF GAP-like zinc finger-containing protein ZiGA4 (ZIGA4); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: NIG (NSP (NUCLEAR SHUTTLE PROTEIN)-INTERACTING GTPASE); GTP binding / GTPase (TAIR:AT4G13350.2); Has 2570 Blast hits to 2242 proteins in 166 species: Archae - 0; Bacteria - 2; Metazoa - 1278; Fungi - 362; Plants - 260; Viruses - 0; Other Eukaryotes - 668 (source: NCBI BLink).  protein_id AT1G08680.3p  transcript_id AT1G08680.3  protein_id AT1G08680.3p  transcript_id AT1G08680.3  
At1g08680	chr1:002762820	0.0	W/2762820-2762918,2763298-2763359,2764236-2764323,2764410-2764471,2764593-2764689,2765056-2765451,2765576-2766175,2766506-2766643,2766726-2766821,2766945-2767031,2767612-2767747,2768060-2768093,2768333-2768387	AT1G08680.1  CDS  gene_syn AGD14, ARF GAP-like zinc finger-containing protein ZiGA4, ARF-GAP domain 14, AT1G08690, F22O13.16, F22O13_16, ZIGA4  gene ZIGA4  function A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD14 belongs to the class 4, together with AGD15.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process regulation of ARF GTPase activity|GO:0032312||IEA  go_function ARF GTPase activator activity|GO:0008060||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_function DNA binding|GO:0003677||ISS  product ZIGA4 (ARF GAP-like zinc finger-containing protein ZiGA4); ARF GTPase activator/ DNA binding / zinc ion binding  note ARF GAP-like zinc finger-containing protein ZiGA4 (ZIGA4); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: NIG (NSP (NUCLEAR SHUTTLE PROTEIN)-INTERACTING GTPASE); GTP binding / GTPase (TAIR:AT4G13350.2); Has 2771 Blast hits to 2242 proteins in 169 species: Archae - 0; Bacteria - 4; Metazoa - 1271; Fungi - 367; Plants - 260; Viruses - 2; Other Eukaryotes - 867 (source: NCBI BLink).  protein_id AT1G08680.1p  transcript_id AT1G08680.1  protein_id AT1G08680.1p  transcript_id AT1G08680.1  
At1g08680	chr1:002762820	0.0	W/2762820-2762918,2763298-2763359,2764236-2764323,2764410-2764471,2764593-2764689,2765056-2765451,2765576-2766175,2766509-2766643,2766726-2766821,2766945-2767031,2767612-2767747,2768060-2768093,2768333-2768387	AT1G08680.2  CDS  gene_syn AGD14, ARF GAP-like zinc finger-containing protein ZiGA4, ARF-GAP domain 14, AT1G08690, F22O13.16, F22O13_16, ZIGA4  gene ZIGA4  function A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD14 belongs to the class 4, together with AGD15.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process regulation of ARF GTPase activity|GO:0032312||IEA  go_function ARF GTPase activator activity|GO:0008060||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_function DNA binding|GO:0003677||ISS  product ZIGA4 (ARF GAP-like zinc finger-containing protein ZiGA4); ARF GTPase activator/ DNA binding / zinc ion binding  note ARF GAP-like zinc finger-containing protein ZiGA4 (ZIGA4); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: NIG (NSP (NUCLEAR SHUTTLE PROTEIN)-INTERACTING GTPASE); GTP binding / GTPase (TAIR:AT4G13350.2); Has 2772 Blast hits to 2231 proteins in 170 species: Archae - 0; Bacteria - 7; Metazoa - 1267; Fungi - 359; Plants - 260; Viruses - 2; Other Eukaryotes - 877 (source: NCBI BLink).  protein_id AT1G08680.2p  transcript_id AT1G08680.2  protein_id AT1G08680.2p  transcript_id AT1G08680.2  
At1g08695	chr1:002769414	0.0	C/2769414-2769483,2769056-2769252	AT1G08695.1  CDS  gene_syn SCR-Like 3, SCRL3  gene SCRL3  function Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165||IEA  product SCRL3 (SCR-Like 3)  note SCR-Like 3 (SCRL3); INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility response (InterPro:IPR010682); BEST Arabidopsis thaliana protein match is: SCRL1 (SCR-Like 1) (TAIR:AT4G10457.1); Has 30 Blast hits to 30 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G08695.1p  transcript_id AT1G08695.1  protein_id AT1G08695.1p  transcript_id AT1G08695.1  
At1g08700	chr1:002771027	0.0	C/2771027-2771348,2769885-2770924	AT1G08700.1  CDS  gene_syn F22O13.18, F22O13_18  function Encodes a protein similar to animal presenilin whose expression is increased in response to potassium (K+) deprivation.  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_component membrane|GO:0016020||ISS  go_process intracellular signaling cascade|GO:0007242||ISS  product presenilin family protein  note presenilin family protein; INVOLVED IN: intracellular signaling cascade; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22A, presenilin (InterPro:IPR001108); BEST Arabidopsis thaliana protein match is: presenilin family protein (TAIR:AT2G29900.1); Has 490 Blast hits to 367 proteins in 86 species: Archae - 4; Bacteria - 0; Metazoa - 380; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT1G08700.1p  transcript_id AT1G08700.1  protein_id AT1G08700.1p  transcript_id AT1G08700.1  
At1g08710	chr1:002771720	0.0	W/2771720-2771955,2772044-2772217,2772444-2772606,2772697-2772895,2773198-2773250	AT1G08710.1  CDS  gene_syn F22O13.19, F22O13_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product F-box family protein  note F-box family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; Has 112 Blast hits to 112 proteins in 29 species: Archae - 3; Bacteria - 2; Metazoa - 76; Fungi - 2; Plants - 17; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G08710.1p  transcript_id AT1G08710.1  protein_id AT1G08710.1p  transcript_id AT1G08710.1  
At1g08710	chr1:002771720	0.0	W/2771720-2771955,2772044-2772217,2772444-2772606,2772697-2773011	AT1G08710.2  CDS  gene_syn F22O13.19, F22O13_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product F-box family protein  note F-box family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; Has 80 Blast hits to 80 proteins in 27 species: Archae - 0; Bacteria - 2; Metazoa - 47; Fungi - 2; Plants - 17; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G08710.2p  transcript_id AT1G08710.2  protein_id AT1G08710.2p  transcript_id AT1G08710.2  
At1g08720	chr1:002774089	0.0	W/2774089-2774499,2774851-2775273,2775519-2775622,2775708-2776801,2777040-2777080,2777597-2777665,2777806-2777906,2777998-2778076,2778168-2778266,2778362-2778430,2778555-2778604,2778737-2778913,2778993-2779077	AT1G08720.1  CDS  gene_syn EDR1, ENHANCED DISEASE RESISTANCE 1, F22O13.20, F22O13_20, MAPKK KINASE EDR1  gene EDR1  function enhanced disease resistance 1 (EDR1) confers resistance to powdery mildew disease caused by the fungus Erysiphe cichoracearum  go_process MAPKKK cascade|GO:0000165|11114160|ISS  go_process cell death|GO:0008219|15894742|IMP  go_process response to water deprivation|GO:0009414|15894742|IMP  go_process response to bacterium|GO:0009617|16565218|IMP  go_process response to fungus|GO:0009620|11114160|IMP  go_process response to ethylene stimulus|GO:0009723|15894742|IMP  go_process response to ethylene stimulus|GO:0009723||NAS  go_process protein amino acid autophosphorylation|GO:0046777|12492839|IDA  go_function MAP kinase kinase kinase activity|GO:0004709|11114160|IMP  go_function MAP kinase kinase kinase activity|GO:0004709|11114160|ISS  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301|12492839|IDA  go_function kinase activity|GO:0016301||ISS  product EDR1 (ENHANCED DISEASE RESISTANCE 1); MAP kinase kinase kinase/ kinase/ protein serine/threonine/tyrosine kinase  note ENHANCED DISEASE RESISTANCE 1 (EDR1); FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, MAP kinase kinase kinase activity, kinase activity; INVOLVED IN: in 7 processes; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G11850.1); Has 87881 Blast hits to 86477 proteins in 3313 species: Archae - 43; Bacteria - 7058; Metazoa - 39537; Fungi - 7024; Plants - 18679; Viruses - 441; Other Eukaryotes - 15099 (source: NCBI BLink).  protein_id AT1G08720.1p  transcript_id AT1G08720.1  protein_id AT1G08720.1p  transcript_id AT1G08720.1  
At1g08730	chr1:002779963	0.0	W/2779963-2780014,2780158-2780261,2780355-2780498,2780581-2780726,2780822-2780978,2781072-2781130,2781214-2781373,2781446-2781595,2781697-2781833,2781908-2782054,2782139-2782240,2782317-2782374,2782446-2782547,2782650-2782687,2782772-2782898,2782973-2783143,2783298-2783429,2783565-2783674,2783767-2783827,2783948-2784125,2784240-2784445,2784534-2784653,2784950-2785048,2785128-2785349,2785464-2785603,2785709-2785820,2785917-2785964,2786057-2786311,2786400-2786555,2786659-2786865,2786953-2787096,2787182-2787252,2787356-2787455,2787526-2787582,2787662-2787718,2787867-2787947,2788045-2788127,2788202-2788325	AT1G08730.1  CDS  gene_syn ATXIC, F22O13.200, F22O13_200, MYOSIN XI C, XIC  gene XIC  function Class XI myosin gene  go_component myosin complex|GO:0016459|7811972|ISS  go_component myosin complex|GO:0016459||ISS  go_process actin filament-based movement|GO:0030048|11516337|TAS  go_function motor activity|GO:0003774|11516337|ISS  go_function motor activity|GO:0003774||ISS  go_function protein binding|GO:0005515||ISS  product XIC; motor/ protein binding  note XIC; FUNCTIONS IN: protein binding, motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: myosin complex; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor region (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: XIE; motor/ protein binding (TAIR:AT1G54560.1); Has 47211 Blast hits to 29023 proteins in 1559 species: Archae - 522; Bacteria - 4337; Metazoa - 25658; Fungi - 3029; Plants - 1458; Viruses - 159; Other Eukaryotes - 12048 (source: NCBI BLink).  protein_id AT1G08730.1p  transcript_id AT1G08730.1  protein_id AT1G08730.1p  transcript_id AT1G08730.1  
At1g08735	chr1:002790290	0.0	W/2790290-2793641	AT1G08735.1  mRNA_TE_gene  pseudo  gene_syn F22O13.21, F22O13_21  note Transposable element gene, Mutator-like transposase family, has a 3.3e-87 P-value blast match to Q9SLM0 /314-478 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g08740	chr1:002795643	0.0	C/2795643-2800081	AT1G08740.1  mRNA_TE_gene  pseudo  gene_syn F22O13.23, F22O13_23  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G29240.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G26530.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G44890.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At1g08750	chr1:002801283	0.0	W/2801283-2801395,2801830-2801871,2801982-2802126,2802388-2802617,2802824-2802881,2803017-2803094,2803241-2803329,2803537-2803618,2803876-2804064,2804252-2804392	AT1G08750.1  CDS  gene_syn F22O13.24, F22O13_24  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_process proteolysis|GO:0006508||ISS  go_function GPI-anchor transamidase activity|GO:0003923||ISS  product GPI-anchor transamidase, putative  note GPI-anchor transamidase, putative; FUNCTIONS IN: GPI-anchor transamidase activity, cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C13, legumain (InterPro:IPR001096); BEST Arabidopsis thaliana protein match is: ALPHA-VPE (alpha-vacuolar processing enzyme); cysteine-type endopeptidase (TAIR:AT2G25940.1); Has 602 Blast hits to 601 proteins in 187 species: Archae - 4; Bacteria - 2; Metazoa - 238; Fungi - 80; Plants - 173; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT1G08750.1p  transcript_id AT1G08750.1  protein_id AT1G08750.1p  transcript_id AT1G08750.1  
At1g08750	chr1:002801283	0.0	W/2801283-2801395,2801830-2801871,2801982-2802126,2802388-2802617,2802824-2802881,2803017-2803094,2803241-2803329,2803537-2803618,2803876-2804064,2804252-2804392	AT1G08750.2  CDS  gene_syn F22O13.24, F22O13_24  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_process proteolysis|GO:0006508||ISS  go_function GPI-anchor transamidase activity|GO:0003923||ISS  product GPI-anchor transamidase, putative  note GPI-anchor transamidase, putative; FUNCTIONS IN: GPI-anchor transamidase activity, cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C13, legumain (InterPro:IPR001096); BEST Arabidopsis thaliana protein match is: ALPHA-VPE (alpha-vacuolar processing enzyme); cysteine-type endopeptidase (TAIR:AT2G25940.1); Has 602 Blast hits to 601 proteins in 187 species: Archae - 4; Bacteria - 2; Metazoa - 238; Fungi - 80; Plants - 173; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT1G08750.2p  transcript_id AT1G08750.2  protein_id AT1G08750.2p  transcript_id AT1G08750.2  
At1g08750	chr1:002801283	0.0	W/2801283-2801395,2801830-2801871,2801982-2802126,2802388-2802617,2802824-2802881,2803017-2803094,2803241-2803329,2803537-2803618,2803876-2804064,2804252-2804392	AT1G08750.3  CDS  gene_syn F22O13.24, F22O13_24  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_process proteolysis|GO:0006508||ISS  go_function GPI-anchor transamidase activity|GO:0003923||ISS  product GPI-anchor transamidase, putative  note GPI-anchor transamidase, putative; FUNCTIONS IN: GPI-anchor transamidase activity, cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C13, legumain (InterPro:IPR001096); BEST Arabidopsis thaliana protein match is: ALPHA-VPE (alpha-vacuolar processing enzyme); cysteine-type endopeptidase (TAIR:AT2G25940.1); Has 602 Blast hits to 601 proteins in 187 species: Archae - 4; Bacteria - 2; Metazoa - 238; Fungi - 80; Plants - 173; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT1G08750.3p  transcript_id AT1G08750.3  protein_id AT1G08750.3p  transcript_id AT1G08750.3  
At1g08760	chr1:002805478	0.0	W/2805478-2806464,2806758-2807057,2807311-2807402,2807542-2808409	AT1G08760.1  CDS  gene_syn F22O13.25, F22O13_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF936, plant (InterPro:IPR010341); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13370.1); Has 495 Blast hits to 251 proteins in 74 species: Archae - 0; Bacteria - 92; Metazoa - 46; Fungi - 15; Plants - 131; Viruses - 0; Other Eukaryotes - 211 (source: NCBI BLink).  protein_id AT1G08760.1p  transcript_id AT1G08760.1  protein_id AT1G08760.1p  transcript_id AT1G08760.1  
At1g08770	chr1:002808933	0.0	W/2808933-2809562	AT1G08770.1  CDS  gene_syn F22O13.26, F22O13_26, PRA1.E, PRENYLATED RAB ACCEPTOR 1.E  gene PRA1.E  go_component endoplasmic reticulum|GO:0005783|18583532|IDA  go_process vesicle-mediated transport|GO:0016192|18583532|IDA  go_function molecular_function|GO:0003674||ND  product PRA1.E (PRENYLATED RAB ACCEPTOR 1.E)  note PRENYLATED RAB ACCEPTOR 1.E (PRA1.E); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: PRA7 (TAIR:AT1G55190.1); Has 350 Blast hits to 350 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 93; Fungi - 56; Plants - 174; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT1G08770.1p  transcript_id AT1G08770.1  protein_id AT1G08770.1p  transcript_id AT1G08770.1  
At1g08780	chr1:002811115	0.0	C/2811115-2811126,2810910-2811026,2809925-2810185	AT1G08780.1  CDS  gene_syn ABI3-INTERACTING PROTEIN 3, AIP3, F22O13.27, F22O13_27, PDF4, PREFOLDIN 4  gene AIP3  go_component prefoldin complex|GO:0016272||IEA  go_process protein folding|GO:0006457||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_process protein folding|GO:0006457||ISS  product AIP3 (ABI3-INTERACTING PROTEIN 3); unfolded protein binding  note ABI3-INTERACTING PROTEIN 3 (AIP3); FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding; LOCATED IN: prefoldin complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin beta-like (InterPro:IPR002777), Prefoldin, subunit 4 (InterPro:IPR016661); Has 256 Blast hits to 255 proteins in 137 species: Archae - 2; Bacteria - 0; Metazoa - 87; Fungi - 83; Plants - 32; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT1G08780.1p  transcript_id AT1G08780.1  protein_id AT1G08780.1p  transcript_id AT1G08780.1  
At1g08790	chr1:002811989	0.0	W/2811989-2812478,2812564-2812646	AT1G08790.1  CDS  gene_syn F22O13.28, F22O13_28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28690.1); Has 112 Blast hits to 112 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 111; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G08790.1p  transcript_id AT1G08790.1  protein_id AT1G08790.1p  transcript_id AT1G08790.1  
At1g08800	chr1:002814918	0.0	C/2814918-2817078,2813578-2814758	AT1G08800.1  CDS  gene_syn F22O13.29, F22O13_29  go_component endomembrane system|GO:0012505||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process response to salt stress|GO:0009651|11351099|IEP  product unknown protein  note unknown protein; INVOLVED IN: response to salt stress, N-terminal protein myristoylation; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30690.1); Has 5590 Blast hits to 4318 proteins in 373 species: Archae - 40; Bacteria - 467; Metazoa - 2654; Fungi - 401; Plants - 432; Viruses - 11; Other Eukaryotes - 1585 (source: NCBI BLink).  protein_id AT1G08800.1p  transcript_id AT1G08800.1  protein_id AT1G08800.1p  transcript_id AT1G08800.1  
At1g08800	chr1:002814918	0.0	C/2814918-2817078,2813578-2814758	AT1G08800.2  CDS  gene_syn F22O13.29, F22O13_29  go_component endomembrane system|GO:0012505||IEA  go_process response to salt stress|GO:0009651|11351099|IEP  product unknown protein  note unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30690.1); Has 5590 Blast hits to 4318 proteins in 373 species: Archae - 40; Bacteria - 467; Metazoa - 2654; Fungi - 401; Plants - 432; Viruses - 11; Other Eukaryotes - 1585 (source: NCBI BLink).  protein_id AT1G08800.2p  transcript_id AT1G08800.2  protein_id AT1G08800.2p  transcript_id AT1G08800.2  
At1g08810	chr1:002819279	0.0	C/2819279-2819872	AT1G08810.2  CDS  gene_syn AtMYB60, F22O13.30, F22O13_30, MYB60, myb domain protein 60  gene MYB60  function putative transcription factor of the R2R3-MYB gene family. Transcript increases under conditions that promote stomatal opening (white and blue light, abi1-1 mutation) and decreases under conditions that trigger stomatal closure (ABA, desiccation, darkness), with the exception of elevated CO2. Expressed exclusively in guard cells of all tissues. It is required for light-induced opening of stomata. Mutant shows reduced stomatal aperture which helps to limit water loss during drought.  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_process response to water deprivation|GO:0009414|16005291|IEP  go_process response to light stimulus|GO:0009416|16005291|IEP  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16005291|IMP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process stomatal movement|GO:0010118|16005291|IMP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|16005291|TAS  product MYB60 (myb domain protein 60); DNA binding / transcription factor  note myb domain protein 60 (MYB60); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 12 processes; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB30 (MYB DOMAIN PROTEIN 30); DNA binding / transcription factor (TAIR:AT3G28910.1); Has 2790 Blast hits to 2774 proteins in 186 species: Archae - 0; Bacteria - 0; Metazoa - 229; Fungi - 4; Plants - 2459; Viruses - 6; Other Eukaryotes - 92 (source: NCBI BLink).  protein_id AT1G08810.2p  transcript_id AT1G08810.2  protein_id AT1G08810.2p  transcript_id AT1G08810.2  
At1g08810	chr1:002820197	0.0	C/2820197-2820329,2819970-2820099,2819279-2819858	AT1G08810.1  CDS  gene_syn AtMYB60, F22O13.30, F22O13_30, MYB60, myb domain protein 60  gene MYB60  function putative transcription factor of the R2R3-MYB gene family. Transcript increases under conditions that promote stomatal opening (white and blue light, abi1-1 mutation) and decreases under conditions that trigger stomatal closure (ABA, desiccation, darkness), with the exception of elevated CO2. Expressed exclusively in guard cells of all tissues. It is required for light-induced opening of stomata. Mutant shows reduced stomatal aperture which helps to limit water loss during drought.  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_process response to water deprivation|GO:0009414|16005291|IEP  go_process response to light stimulus|GO:0009416|16005291|IEP  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16005291|IMP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process stomatal movement|GO:0010118|16005291|IMP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|16005291|TAS  product MYB60 (myb domain protein 60); DNA binding / transcription factor  note myb domain protein 60 (MYB60); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 12 processes; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB30 (MYB DOMAIN PROTEIN 30); DNA binding / transcription factor (TAIR:AT3G28910.1); Has 6212 Blast hits to 5807 proteins in 361 species: Archae - 0; Bacteria - 0; Metazoa - 633; Fungi - 286; Plants - 3709; Viruses - 7; Other Eukaryotes - 1577 (source: NCBI BLink).  protein_id AT1G08810.1p  transcript_id AT1G08810.1  protein_id AT1G08810.1p  transcript_id AT1G08810.1  
At1g08820	chr1:002824364	0.0	C/2824364-2824412,2823827-2823897,2823616-2823697,2823105-2823220,2822833-2823012,2822171-2822641,2822017-2822094,2821810-2821923	AT1G08820.1  CDS  gene_syn F22O13.31, F22O13_31, VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2, VAP27-2  gene VAP27-2  function Encodes VAP33-like protein that interacts with cowpea mosaic virus protein 60K. Is a SNARE-like protein that may be involved in vesicular transport to or from the ER.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function structural molecule activity|GO:0005198||IEA  go_component endoplasmic reticulum membrane|GO:0005789|11907339|IDA  go_process intracellular transport|GO:0046907|11907339|TAS  product VAP27-2 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2); structural molecule  note VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2 (VAP27-2); FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular transport; LOCATED IN: plasma membrane, endoplasmic reticulum membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535); BEST Arabidopsis thaliana protein match is: VAP (VESICLE ASSOCIATED PROTEIN); protein binding (TAIR:AT3G60600.3); Has 794 Blast hits to 773 proteins in 160 species: Archae - 0; Bacteria - 17; Metazoa - 379; Fungi - 109; Plants - 229; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT1G08820.1p  transcript_id AT1G08820.1  protein_id AT1G08820.1p  transcript_id AT1G08820.1  
At1g08820	chr1:002824364	0.0	C/2824364-2824412,2823827-2823897,2823616-2823697,2823105-2823220,2822833-2823012,2822171-2822641,2822017-2822094,2821810-2821923	AT1G08820.2  CDS  gene_syn F22O13.31, F22O13_31, VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2, VAP27-2  gene VAP27-2  function Encodes VAP33-like protein that interacts with cowpea mosaic virus protein 60K. Is a SNARE-like protein that may be involved in vesicular transport to or from the ER.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function structural molecule activity|GO:0005198||IEA  go_component endoplasmic reticulum membrane|GO:0005789|11907339|IDA  go_process intracellular transport|GO:0046907|11907339|TAS  product VAP27-2 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2); structural molecule  note VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2 (VAP27-2); FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular transport; LOCATED IN: plasma membrane, endoplasmic reticulum membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535); BEST Arabidopsis thaliana protein match is: VAP (VESICLE ASSOCIATED PROTEIN); protein binding (TAIR:AT3G60600.3); Has 794 Blast hits to 773 proteins in 160 species: Archae - 0; Bacteria - 17; Metazoa - 379; Fungi - 109; Plants - 229; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT1G08820.2p  transcript_id AT1G08820.2  protein_id AT1G08820.2p  transcript_id AT1G08820.2  
At1g08830	chr1:002827700	0.0	W/2827700-2827775,2827872-2827973,2828106-2828201,2828380-2828411,2828506-2828581,2828753-2828806,2829031-2829053	AT1G08830.1  CDS  gene_syn COPPER/ZINC SUPEROXIDE DISMUTASE 1, CSD1, F22O13.32, F22O13_32  gene CSD1  function Encodes a cytosolic copper/zinc superoxide dismutase CSD1 that can detoxify superoxide radicals. Its expression is affected by miR398-directed mRNA cleavage. Regulated by biotic and abiotic stress.  go_component cytoplasm|GO:0005737|1731963|NAS  go_component cytosol|GO:0005829|12028573|TAS  go_process response to oxidative stress|GO:0006979|12028573|TAS  go_process response to oxidative stress|GO:0006979|9765550|IEP  go_process response to salt stress|GO:0009651|19148671|IEP  go_process response to iron ion|GO:0010039|16861386|IEP  go_process response to ozone|GO:0010193|19148671|IEP  go_process removal of superoxide radicals|GO:0019430|9765550|IC  go_process defense response to bacterium|GO:0042742|19148671|IEP  go_process response to copper ion|GO:0046688|15772282|IEP  go_function superoxide dismutase activity|GO:0004784|9765550|IDA  go_function superoxide dismutase activity|GO:0004784|9765550|TAS  product CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1); superoxide dismutase  note COPPER/ZINC SUPEROXIDE DISMUTASE 1 (CSD1); FUNCTIONS IN: superoxide dismutase activity; INVOLVED IN: in 7 processes; LOCATED IN: cytosol, cytoplasm; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Superoxide dismutase, copper/zinc, binding site (InterPro:IPR018152), Superoxide dismutase, copper/zinc binding (InterPro:IPR001424); BEST Arabidopsis thaliana protein match is: CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2); superoxide dismutase (TAIR:AT2G28190.1); Has 3372 Blast hits to 3357 proteins in 1004 species: Archae - 6; Bacteria - 1189; Metazoa - 968; Fungi - 206; Plants - 550; Viruses - 131; Other Eukaryotes - 322 (source: NCBI BLink).  protein_id AT1G08830.1p  transcript_id AT1G08830.1  protein_id AT1G08830.1p  transcript_id AT1G08830.1  
At1g08830	chr1:002827700	0.0	W/2827700-2827775,2827872-2827973,2828106-2828201,2828380-2828411,2828506-2828581,2828753-2828806,2829031-2829053	AT1G08830.2  CDS  gene_syn COPPER/ZINC SUPEROXIDE DISMUTASE 1, CSD1, F22O13.32, F22O13_32  gene CSD1  function Encodes a cytosolic copper/zinc superoxide dismutase CSD1 that can detoxify superoxide radicals. Its expression is affected by miR398-directed mRNA cleavage. Regulated by biotic and abiotic stress.  go_component cytoplasm|GO:0005737|1731963|NAS  go_component cytosol|GO:0005829|12028573|TAS  go_process response to oxidative stress|GO:0006979|12028573|TAS  go_process response to oxidative stress|GO:0006979|9765550|IEP  go_process response to salt stress|GO:0009651|19148671|IEP  go_process response to iron ion|GO:0010039|16861386|IEP  go_process response to ozone|GO:0010193|19148671|IEP  go_process removal of superoxide radicals|GO:0019430|9765550|IC  go_process defense response to bacterium|GO:0042742|19148671|IEP  go_process response to copper ion|GO:0046688|15772282|IEP  go_function superoxide dismutase activity|GO:0004784|9765550|IDA  go_function superoxide dismutase activity|GO:0004784|9765550|TAS  product CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1); superoxide dismutase  note COPPER/ZINC SUPEROXIDE DISMUTASE 1 (CSD1); FUNCTIONS IN: superoxide dismutase activity; INVOLVED IN: in 7 processes; LOCATED IN: cytosol, cytoplasm; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Superoxide dismutase, copper/zinc, binding site (InterPro:IPR018152), Superoxide dismutase, copper/zinc binding (InterPro:IPR001424); BEST Arabidopsis thaliana protein match is: CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2); superoxide dismutase (TAIR:AT2G28190.1); Has 3372 Blast hits to 3357 proteins in 1004 species: Archae - 6; Bacteria - 1189; Metazoa - 968; Fungi - 206; Plants - 550; Viruses - 131; Other Eukaryotes - 322 (source: NCBI BLink).  protein_id AT1G08830.2p  transcript_id AT1G08830.2  protein_id AT1G08830.2p  transcript_id AT1G08830.2  
At1g08840	chr1:002838034	0.0	C/2838034-2838369,2837737-2837865,2837386-2837598,2837248-2837310,2836861-2837067,2836723-2836776,2836596-2836657,2836158-2836290,2835948-2836058,2835739-2835835,2835372-2835454,2834927-2834992,2834639-2834794,2834489-2834544,2834339-2834396,2834151-2834261,2833492-2833626,2833145-2833399,2832901-2832975,2832650-2832771,2832495-2832561,2832273-2832377,2831980-2832147,2831695-2831764,2831469-2831620,2831168-2831245,2830996-2831088,2830769-2830906,2830373-2830412,2830205-2830278,2830004-2830141,2829791-2829910,2829579-2829704	AT1G08840.1  CDS  gene_syn emb2411, embryo defective 2411  gene emb2411  go_component chloroplast|GO:0009507||IEA  go_function DNA binding|GO:0003677||IEA  go_function ATP-dependent DNA helicase activity|GO:0004003||IEA  go_function ATP binding|GO:0005524||IEA  go_process DNA replication|GO:0006260||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function ATP-dependent DNA helicase activity|GO:0004003||ISS  product emb2411 (embryo defective 2411); ATP binding / ATP-dependent DNA helicase/ DNA binding  note embryo defective 2411 (emb2411); FUNCTIONS IN: ATP-dependent DNA helicase activity, DNA binding, ATP binding; INVOLVED IN: embryonic development ending in seed dormancy, DNA replication; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA replication factor Dna2 (InterPro:IPR014808); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT2G03270.1); Has 4081 Blast hits to 3639 proteins in 571 species: Archae - 158; Bacteria - 979; Metazoa - 1088; Fungi - 747; Plants - 269; Viruses - 30; Other Eukaryotes - 810 (source: NCBI BLink).  protein_id AT1G08840.1p  transcript_id AT1G08840.1  protein_id AT1G08840.1p  transcript_id AT1G08840.1  
At1g08845	chr1:002838789	0.0	W/2838789-2838815,2839212-2839304,2839840-2839971,2840503-2840955	AT1G08845.2  CDS  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_component endomembrane system|GO:0012505||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  product structural constituent of ribosome  note structural constituent of ribosome; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: endomembrane system, ribosome, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18/L5 (InterPro:IPR005484); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT3G22450.1).  protein_id AT1G08845.2p  transcript_id AT1G08845.2  protein_id AT1G08845.2p  transcript_id AT1G08845.2  
At1g08845	chr1:002839855	0.0	W/2839855-2839971,2840503-2840955	AT1G08845.1  CDS  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  product structural constituent of ribosome  note structural constituent of ribosome; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18/L5 (InterPro:IPR005484); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT3G22450.1); Has 150 Blast hits to 150 proteins in 39 species: Archae - 0; Bacteria - 60; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G08845.1p  transcript_id AT1G08845.1  protein_id AT1G08845.1p  transcript_id AT1G08845.1  
At1g08860	chr1:002842153	0.0	W/2842153-2842317,2843005-2843052,2843179-2843327,2843412-2843460,2843557-2843613,2843746-2843925,2844020-2844154,2844235-2844296,2844377-2844473,2844556-2844670,2844753-2844829,2845069-2845206,2845360-2845524,2845639-2845752,2845842-2845938,2846032-2846138	AT1G08860.1  CDS  gene_syn BON3, BONZAI 3, F7G19.25, F7G19_25  gene BON3  function Encodes a copine-like protein, which is a member of a newly identified class of calcium-dependent, phospholipid binding proteins that are present in a wide range of organisms. Overexpression of this gene suppresses bon1-1 phenotypes. Double mutant analyses with bon1-1 suggest that BON1 and BON3 have overlapping functions in maintaining cellular homeostasis and inhibiting cell death.  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process positive regulation of cellular defense response|GO:0010186||NAS  go_process cellular homeostasis|GO:0019725||NAS  go_function calcium-dependent phospholipid binding|GO:0005544||NAS  product BON3 (BONZAI 3); calcium-dependent phospholipid binding  note BONZAI 3 (BON3); FUNCTIONS IN: calcium-dependent phospholipid binding; INVOLVED IN: N-terminal protein myristoylation, positive regulation of cellular defense response, cellular homeostasis; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Copine (InterPro:IPR010734), C2 calcium-dependent membrane targeting (InterPro:IPR000008), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: BON1 (BONZAI 1); calcium-dependent phospholipid binding (TAIR:AT5G61900.3); Has 1210 Blast hits to 1137 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 774; Fungi - 8; Plants - 179; Viruses - 0; Other Eukaryotes - 249 (source: NCBI BLink).  protein_id AT1G08860.1p  transcript_id AT1G08860.1  protein_id AT1G08860.1p  transcript_id AT1G08860.1  
At1g08870	chr1:002846536	0.0	C/2846536-2846608	AT1G08870.1  tRNA  gene_syn 50888.TRNA-ALA-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: TGC)  transcript_id AT1G08870.1  
At1g08880	chr1:002847470	0.0	C/2847470-2847676,2847144-2847365	AT1G08880.1  CDS  gene_syn F7G19.24, F7G19_24, G-H2AX, GAMMA H2AX, GAMMA HISTONE VARIANT H2AX, GAMMA-H2AX, H2AXA, HTA5  gene H2AXA  function Encodes HTA5, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (& 947;-H2AX) occurs around the break site.  H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse & 947;-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no & 947;-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of & 947;-H2AX to a maximum of >50 diffuse foci. The level of & 947;H2AX then remains constant for a further 13 h before undergoing a gradual decrease to 10 20 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin.  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_component nucleus|GO:0005634|17785529|IDA  go_function DNA binding|GO:0003677||ISS  product H2AXA; DNA binding  note H2AXA; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: GAMMA-H2AX (GAMMA HISTONE VARIANT H2AX); DNA binding (TAIR:AT1G54690.1); Has 3283 Blast hits to 3283 proteins in 307 species: Archae - 0; Bacteria - 0; Metazoa - 2200; Fungi - 253; Plants - 450; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink).  protein_id AT1G08880.1p  transcript_id AT1G08880.1  protein_id AT1G08880.1p  transcript_id AT1G08880.1  
At1g08890	chr1:002848374	0.0	W/2848374-2848505,2848737-2848799,2848911-2849000,2849130-2849189,2849288-2849353,2849460-2849525,2849610-2849685,2849796-2849860,2849952-2850044,2850137-2850217,2850477-2850561,2850679-2850722,2850815-2850877,2850969-2851028,2851117-2851170,2851278-2851337,2851437-2851551,2851895-2852016	AT1G08890.1  CDS  gene_syn F7G19.23, F7G19_23  go_component chloroplast|GO:0009507|15028209|IDA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product sugar transporter family protein  note sugar transporter family protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast, membrane; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: carbohydrate transmembrane transporter (TAIR:AT1G08900.2); Has 14806 Blast hits to 14481 proteins in 1001 species: Archae - 203; Bacteria - 3991; Metazoa - 4226; Fungi - 4106; Plants - 1396; Viruses - 0; Other Eukaryotes - 884 (source: NCBI BLink).  protein_id AT1G08890.1p  transcript_id AT1G08890.1  protein_id AT1G08890.1p  transcript_id AT1G08890.1  
At1g08900	chr1:002852478	0.0	W/2852478-2852603,2852716-2852778,2852906-2852995,2853110-2853169,2853271-2853336,2853436-2853501,2853604-2853679,2853779-2853843,2853946-2854038,2854143-2854223,2854334-2854418,2854523-2854566,2854658-2854720,2854812-2854871,2854968-2855021,2855130-2855189,2855281-2855395,2855489-2855610	AT1G08900.1  CDS  gene_syn F7G19.22, F7G19_22  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product carbohydrate transmembrane transporter  note carbohydrate transmembrane transporter; FUNCTIONS IN: carbohydrate transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter family protein (TAIR:AT1G08890.1); Has 15336 Blast hits to 14989 proteins in 1020 species: Archae - 218; Bacteria - 4213; Metazoa - 4473; Fungi - 4120; Plants - 1384; Viruses - 0; Other Eukaryotes - 928 (source: NCBI BLink).  protein_id AT1G08900.1p  transcript_id AT1G08900.1  protein_id AT1G08900.1p  transcript_id AT1G08900.1  
At1g08900	chr1:002852478	0.0	W/2852478-2852603,2852716-2852778,2852906-2852995,2853110-2853169,2853271-2853336,2853436-2853501,2853604-2853679,2853779-2853843,2853946-2854038,2854143-2854223,2854334-2854418,2854523-2854566,2854658-2854720,2854812-2854871,2854968-2855021,2855130-2855189,2855281-2855395,2855489-2855610	AT1G08900.2  CDS  gene_syn F7G19.22, F7G19_22  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product carbohydrate transmembrane transporter  note carbohydrate transmembrane transporter; FUNCTIONS IN: carbohydrate transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter family protein (TAIR:AT1G08890.1); Has 15336 Blast hits to 14989 proteins in 1020 species: Archae - 218; Bacteria - 4213; Metazoa - 4473; Fungi - 4120; Plants - 1384; Viruses - 0; Other Eukaryotes - 928 (source: NCBI BLink).  protein_id AT1G08900.2p  transcript_id AT1G08900.2  protein_id AT1G08900.2p  transcript_id AT1G08900.2  
At1g08900	chr1:002852478	0.0	W/2852478-2852603,2852740-2852778,2852906-2852995,2853110-2853169,2853271-2853336,2853436-2853501,2853604-2853679,2853779-2853843,2853946-2854038,2854143-2854223,2854334-2854418,2854523-2854566,2854658-2854720,2854812-2854871,2854968-2855021,2855130-2855189,2855281-2855395,2855489-2855610	AT1G08900.3  CDS  gene_syn F7G19.22, F7G19_22  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product carbohydrate transmembrane transporter  note carbohydrate transmembrane transporter; FUNCTIONS IN: carbohydrate transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter family protein (TAIR:AT1G08890.1); Has 15141 Blast hits to 14796 proteins in 1012 species: Archae - 219; Bacteria - 4053; Metazoa - 4475; Fungi - 4105; Plants - 1386; Viruses - 0; Other Eukaryotes - 903 (source: NCBI BLink).  protein_id AT1G08900.3p  transcript_id AT1G08900.3  protein_id AT1G08900.3p  transcript_id AT1G08900.3  
At1g08910	chr1:002856227	0.0	W/2856227-2856249,2856421-2856483,2856567-2856678,2856776-2856844,2856941-2857006,2857087-2857169,2857301-2857352,2857431-2857502,2857779-2857846,2857936-2857984,2858076-2858160,2858237-2858338,2858503-2858554,2858653-2858704,2858995-2859057,2859193-2859846,2859953-2860816	AT1G08910.1  CDS  gene_syn EMB3001, F7G19.21, F7G19_21, embryo defective 3001  gene EMB3001  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function zinc ion binding|GO:0008270||ISS  product EMB3001 (embryo defective 3001); zinc ion binding  note embryo defective 3001 (EMB3001); FUNCTIONS IN: zinc ion binding; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, MIZ-type (InterPro:IPR004181); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT5G41580.1); Has 798 Blast hits to 781 proteins in 145 species: Archae - 0; Bacteria - 21; Metazoa - 523; Fungi - 113; Plants - 65; Viruses - 5; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT1G08910.1p  transcript_id AT1G08910.1  protein_id AT1G08910.1p  transcript_id AT1G08910.1  
At1g08920	chr1:002867446	0.0	W/2867446-2867592,2867683-2867745,2867843-2867932,2868011-2868136,2868231-2868296,2868398-2868473,2868569-2868633,2868716-2868808,2868904-2868984,2869078-2869162,2869251-2869294,2869378-2869440,2869515-2869595,2869714-2869767,2869860-2869919,2870014-2870128,2870236-2870360	AT1G08920.2  CDS  gene_syn F7G19.20, F7G19_20  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product sugar transporter, putative  note sugar transporter, putative; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Phosphopantetheine attachment site (InterPro:IPR006162), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ERD6 (EARLY RESPONSE TO DEHYDRATION 6); carbohydrate transmembrane transporter/ sugar transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT1G08930.2); Has 14684 Blast hits to 14344 proteins in 1042 species: Archae - 183; Bacteria - 4689; Metazoa - 3670; Fungi - 3962; Plants - 1292; Viruses - 0; Other Eukaryotes - 888 (source: NCBI BLink).  protein_id AT1G08920.2p  transcript_id AT1G08920.2  protein_id AT1G08920.2p  transcript_id AT1G08920.2  
At1g08920	chr1:002867446	0.0	W/2867446-2867592,2867683-2867745,2867843-2867932,2868011-2868136,2868231-2868296,2868398-2868473,2868569-2868633,2868716-2868808,2868904-2868984,2869078-2869162,2869251-2869294,2869378-2869440,2869536-2869595,2869714-2869767,2869860-2869919,2870014-2870128,2870236-2870360	AT1G08920.1  CDS  gene_syn F7G19.20, F7G19_20  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product sugar transporter, putative  note sugar transporter, putative; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ERD6 (EARLY RESPONSE TO DEHYDRATION 6); carbohydrate transmembrane transporter/ sugar transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT1G08930.2); Has 15222 Blast hits to 14869 proteins in 1056 species: Archae - 191; Bacteria - 5015; Metazoa - 3770; Fungi - 4034; Plants - 1313; Viruses - 0; Other Eukaryotes - 899 (source: NCBI BLink).  protein_id AT1G08920.1p  transcript_id AT1G08920.1  protein_id AT1G08920.1p  transcript_id AT1G08920.1  
At1g08920	chr1:002867446	0.0	W/2867446-2867592,2867683-2867745,2867843-2867932,2868011-2868136,2868231-2868296,2868398-2868473,2868569-2868633,2868716-2868808,2868904-2868984,2869078-2869162,2869251-2869294,2869378-2869440,2869536-2869595,2869714-2869767,2869860-2869919,2870014-2870190	AT1G08920.3  CDS  gene_syn F7G19.20, F7G19_20  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product sugar transporter, putative  note sugar transporter, putative; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ERD6 (EARLY RESPONSE TO DEHYDRATION 6); carbohydrate transmembrane transporter/ sugar transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT1G08930.2); Has 14224 Blast hits to 13969 proteins in 1041 species: Archae - 186; Bacteria - 4594; Metazoa - 3563; Fungi - 3841; Plants - 1193; Viruses - 0; Other Eukaryotes - 847 (source: NCBI BLink).  protein_id AT1G08920.3p  transcript_id AT1G08920.3  protein_id AT1G08920.3p  transcript_id AT1G08920.3  
At1g08930	chr1:002873604	0.0	W/2873604-2873828,2873958-2874020,2874096-2874185,2874311-2874370,2874492-2874557,2874648-2874713,2874816-2874891,2874996-2875060,2875210-2875302,2875415-2875495,2875635-2875719,2875824-2875867,2875961-2876023,2876121-2876180,2876326-2876439,2876639-2876753,2876855-2876979	AT1G08930.1  CDS  gene_syn EARLY RESPONSE TO DEHYDRATION 6, ERD6, F7G19.19, F7G19_19  gene ERD6  function encodes a putative sucrose transporter whose gene expression is induced by dehydration and cold.  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  go_process response to cold|GO:0009409|9545564|IEP  go_process response to water deprivation|GO:0009414|8075396|IEP  go_process response to chitin|GO:0010200|17722694|IEP  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  go_function sugar transmembrane transporter activity|GO:0051119|9545564|ISS  product ERD6 (EARLY RESPONSE TO DEHYDRATION 6); carbohydrate transmembrane transporter/ sugar transmembrane transporter/ sugar:hydrogen symporter  note EARLY RESPONSE TO DEHYDRATION 6 (ERD6); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: response to water deprivation, response to cold, response to chitin; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter, putative (TAIR:AT1G08920.1); Has 17916 Blast hits to 17491 proteins in 1166 species: Archae - 246; Bacteria - 6333; Metazoa - 4397; Fungi - 4333; Plants - 1581; Viruses - 0; Other Eukaryotes - 1026 (source: NCBI BLink).  protein_id AT1G08930.1p  transcript_id AT1G08930.1  protein_id AT1G08930.1p  transcript_id AT1G08930.1  
At1g08930	chr1:002873604	0.0	W/2873604-2873828,2873958-2874020,2874096-2874185,2874311-2874370,2874492-2874557,2874648-2874713,2874816-2874891,2874996-2875060,2875210-2875302,2875415-2875495,2875635-2875719,2875824-2875867,2875961-2876023,2876121-2876180,2876326-2876439,2876639-2876753,2876855-2876979	AT1G08930.2  CDS  gene_syn EARLY RESPONSE TO DEHYDRATION 6, ERD6, F7G19.19, F7G19_19  gene ERD6  function encodes a putative sucrose transporter whose gene expression is induced by dehydration and cold.  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  go_process response to cold|GO:0009409|9545564|IEP  go_process response to water deprivation|GO:0009414|8075396|IEP  go_process response to chitin|GO:0010200|17722694|IEP  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  go_function sugar transmembrane transporter activity|GO:0051119|9545564|ISS  product ERD6 (EARLY RESPONSE TO DEHYDRATION 6); carbohydrate transmembrane transporter/ sugar transmembrane transporter/ sugar:hydrogen symporter  note EARLY RESPONSE TO DEHYDRATION 6 (ERD6); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: response to water deprivation, response to cold, response to chitin; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter, putative (TAIR:AT1G08920.1); Has 17916 Blast hits to 17491 proteins in 1166 species: Archae - 246; Bacteria - 6333; Metazoa - 4397; Fungi - 4333; Plants - 1581; Viruses - 0; Other Eukaryotes - 1026 (source: NCBI BLink).  protein_id AT1G08930.2p  transcript_id AT1G08930.2  protein_id AT1G08930.2p  transcript_id AT1G08930.2  
At1g08940	chr1:002877694	0.0	W/2877694-2878150,2878716-2879104	AT1G08940.1  CDS  gene_syn F7G19.18, F7G19_18  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function catalytic activity|GO:0003824||ISS  product phosphoglycerate/bisphosphoglycerate mutase family protein  note phosphoglycerate/bisphosphoglycerate mutase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078), Phosphoglycerate/bisphosphoglycerate mutase (InterPro:IPR001345); BEST Arabidopsis thaliana protein match is: phosphoglycerate/bisphosphoglycerate mutase family protein (TAIR:AT3G05170.1); Has 608 Blast hits to 596 proteins in 217 species: Archae - 9; Bacteria - 317; Metazoa - 2; Fungi - 128; Plants - 42; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT1G08940.1p  transcript_id AT1G08940.1  protein_id AT1G08940.1p  transcript_id AT1G08940.1  
At1g08950	chr1:002879303	0.0	W/2879303-2879374	AT1G08950.1  tRNA  gene_syn 50888.TRNA-PRO-1  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: AGG)  transcript_id AT1G08950.1  
At1g08960	chr1:002879698	0.0	W/2879698-2880573,2881113-2881877	AT1G08960.1  CDS  gene_syn ATCAX11, CATION EXCHANGER 11, CAX11, F7G19.17, F7G19_17  gene CAX11  function member of Potassium-dependent sodium-calcium exchanger like-family  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812||ISS  go_function calcium:sodium antiporter activity|GO:0005432||ISS  go_function cation:cation antiporter activity|GO:0015491|11500563|NAS  go_function cation:cation antiporter activity|GO:0015491||ISS  product CAX11; calcium:sodium antiporter/ cation:cation antiporter  note CAX11; FUNCTIONS IN: cation:cation antiporter activity, calcium:sodium antiporter activity; INVOLVED IN: cation transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sodium/calcium exchanger membrane region (InterPro:IPR004837); BEST Arabidopsis thaliana protein match is: CAX7 (calcium exchanger 7); calcium:sodium antiporter/ cation:cation antiporter (TAIR:AT5G17860.1); Has 3109 Blast hits to 2185 proteins in 538 species: Archae - 46; Bacteria - 1147; Metazoa - 1059; Fungi - 183; Plants - 97; Viruses - 0; Other Eukaryotes - 577 (source: NCBI BLink).  protein_id AT1G08960.1p  transcript_id AT1G08960.1  protein_id AT1G08960.1p  transcript_id AT1G08960.1  
At1g08970	chr1:002883144	0.0	W/2883144-2883839	AT1G08970.1  CDS  gene_syn F7G19.16, F7G19_16, HAP5C, HEME ACTIVATED PROTEIN 5C, NF-YC9, NUCLEAR FACTOR Y, SUBUNIT C9  gene NF-YC9  function heme activated protein (HAP5c)  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleus|GO:0005634||ISS  go_component cytoplasm|GO:0005737|15610358|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9); DNA binding / transcription factor  note NUCLEAR FACTOR Y, SUBUNIT C9 (NF-YC9); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3); DNA binding / transcription factor (TAIR:AT1G54830.3); Has 916 Blast hits to 916 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 358; Fungi - 227; Plants - 253; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT1G08970.1p  transcript_id AT1G08970.1  protein_id AT1G08970.1p  transcript_id AT1G08970.1  
At1g08970	chr1:002883144	0.0	W/2883144-2883839	AT1G08970.2  CDS  gene_syn F7G19.16, F7G19_16, HAP5C, HEME ACTIVATED PROTEIN 5C, NF-YC9, NUCLEAR FACTOR Y, SUBUNIT C9  gene NF-YC9  function heme activated protein (HAP5c)  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleus|GO:0005634||ISS  go_component cytoplasm|GO:0005737|15610358|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9); DNA binding / transcription factor  note NUCLEAR FACTOR Y, SUBUNIT C9 (NF-YC9); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3); DNA binding / transcription factor (TAIR:AT1G54830.3); Has 916 Blast hits to 916 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 358; Fungi - 227; Plants - 253; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT1G08970.2p  transcript_id AT1G08970.2  protein_id AT1G08970.2p  transcript_id AT1G08970.2  
At1g08970	chr1:002883144	0.0	W/2883144-2883839	AT1G08970.3  CDS  gene_syn F7G19.16, F7G19_16, HAP5C, HEME ACTIVATED PROTEIN 5C, NF-YC9, NUCLEAR FACTOR Y, SUBUNIT C9  gene NF-YC9  function heme activated protein (HAP5c)  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleus|GO:0005634||ISS  go_component cytoplasm|GO:0005737|15610358|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9); DNA binding / transcription factor  note NUCLEAR FACTOR Y, SUBUNIT C9 (NF-YC9); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3); DNA binding / transcription factor (TAIR:AT1G54830.3); Has 916 Blast hits to 916 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 358; Fungi - 227; Plants - 253; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT1G08970.3p  transcript_id AT1G08970.3  protein_id AT1G08970.3p  transcript_id AT1G08970.3  
At1g08970	chr1:002883144	0.0	W/2883144-2883839	AT1G08970.4  CDS  gene_syn F7G19.16, F7G19_16, HAP5C, HEME ACTIVATED PROTEIN 5C, NF-YC9, NUCLEAR FACTOR Y, SUBUNIT C9  gene NF-YC9  function heme activated protein (HAP5c)  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleus|GO:0005634||ISS  go_component cytoplasm|GO:0005737|15610358|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9); DNA binding / transcription factor  note NUCLEAR FACTOR Y, SUBUNIT C9 (NF-YC9); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3); DNA binding / transcription factor (TAIR:AT1G54830.3); Has 916 Blast hits to 916 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 358; Fungi - 227; Plants - 253; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT1G08970.4p  transcript_id AT1G08970.4  protein_id AT1G08970.4p  transcript_id AT1G08970.4  
At1g08980	chr1:002884455	0.0	W/2884455-2884567,2884649-2884801,2884934-2885058,2885150-2885275,2885351-2885533,2885614-2885770,2885840-2886008,2886099-2886233,2886314-2886430	AT1G08980.1  CDS  gene_syn AMI1, AMIDASE 1, AMIDASE-LIKE PROTEIN 1, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, ATAMI1, ATTOC64-I  gene AMI1  function Encodes an enzyme with similarity to bacterial acylamidohydrolases and exhibits indole-3-acetamide amidohydrolase activity in vitro. This enzyme may be involved in the in vivo biosynthesis of indole-acetic acid from indole-3-acetamide, a native metabolite of A. thaliana. It appears to exist as a monomer.  go_component cytoplasm|GO:0005737|16738862|IDA  go_process indoleacetic acid biosynthetic process|GO:0009684|12620340|IDA  go_function amidase activity|GO:0004040|17555521|IDA  go_function amidase activity|GO:0004040||ISS  go_function hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds|GO:0016810|12620340|IDA  go_function indoleacetamide hydrolase activity|GO:0043864|12620340|IDA  product AMI1 (AMIDASE 1); amidase/ hydrolase, acting on carbon-nitrogen (but not peptide) bonds / indoleacetamide hydrolase  note AMIDASE 1 (AMI1); FUNCTIONS IN: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, amidase activity, indoleacetamide hydrolase activity; INVOLVED IN: indoleacetic acid biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amidase signature enzyme (InterPro:IPR000120); BEST Arabidopsis thaliana protein match is: atToc64-III (Arabidopsis thaliana translocon at the outer membrane of chloroplasts 64-III); binding / carbon-nitrogen ligase, with glutamine as amido-N-donor (TAIR:AT3G17970.1); Has 12758 Blast hits to 12738 proteins in 1424 species: Archae - 143; Bacteria - 6071; Metazoa - 493; Fungi - 876; Plants - 203; Viruses - 0; Other Eukaryotes - 4972 (source: NCBI BLink).  protein_id AT1G08980.1p  transcript_id AT1G08980.1  protein_id AT1G08980.1p  transcript_id AT1G08980.1  
At1g08985	chr1:002887329	0.0	W/2887329-2887634	AT1G08985.1  CDS  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G21920.1); Has 18 Blast hits to 18 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G08985.1p  transcript_id AT1G08985.1  protein_id AT1G08985.1p  transcript_id AT1G08985.1  
At1g08990	chr1:002888753	0.0	W/2888753-2889500,2889638-2890104,2890268-2890753	AT1G08990.1  CDS  gene_syn F7G19.14, F7G19_14, PGSIP5, PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 5  gene PGSIP5  go_component endomembrane system|GO:0012505||IEA  go_process biosynthetic process|GO:0009058||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product PGSIP5 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 5); transferase, transferring glycosyl groups  note PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 5 (PGSIP5); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: PGSIP4 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 4); transferase, transferring glycosyl groups (TAIR:AT1G54940.1); Has 910 Blast hits to 906 proteins in 200 species: Archae - 0; Bacteria - 63; Metazoa - 225; Fungi - 189; Plants - 305; Viruses - 70; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT1G08990.1p  transcript_id AT1G08990.1  protein_id AT1G08990.1p  transcript_id AT1G08990.1  
At1g09000	chr1:002891111	0.0	W/2891111-2891407,2891524-2891565,2891662-2891727,2891828-2891938,2892018-2892098,2892182-2892259,2892400-2892482,2892624-2892705,2892787-2892887,2892999-2893038,2893123-2893182,2893267-2893316,2893415-2893634,2893751-2893921,2894015-2894367,2894630-2894700,2894893-2894987	AT1G09000.1  CDS  gene_syn ANP1, ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 1, F7G19.13, F7G19_13, MAP KINASE KINASE KINASE 1, MAPKKK1  gene ANP1  function NPK1-related protein kinase 1S  go_component cellular_component|GO:0005575||ND  go_process response to oxidative stress|GO:0006979|10717008|IDA  go_process flower development|GO:0009908|12034900|IGI  go_function MAP kinase kinase kinase activity|GO:0004709|9263451|ISS  go_function kinase activity|GO:0016301||ISS  product ANP1 (ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 1); MAP kinase kinase kinase/ kinase  note ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 1 (ANP1); FUNCTIONS IN: MAP kinase kinase kinase activity, kinase activity; INVOLVED IN: flower development, response to oxidative stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Mitogen activated protein kinase kinase kinase 3 (InterPro:IPR015748), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: ANP2; MAP kinase kinase kinase/ kinase (TAIR:AT1G54960.1); Has 98616 Blast hits to 96872 proteins in 3355 species: Archae - 75; Bacteria - 8500; Metazoa - 43415; Fungi - 8804; Plants - 19104; Viruses - 503; Other Eukaryotes - 18215 (source: NCBI BLink).  protein_id AT1G09000.1p  transcript_id AT1G09000.1  protein_id AT1G09000.1p  transcript_id AT1G09000.1  
At1g09010	chr1:002899139	0.0	C/2899139-2899287,2898762-2898900,2898448-2898672,2898305-2898363,2898181-2898229,2897840-2898070,2897557-2897726,2897266-2897470,2896541-2897185,2896146-2896373,2895259-2895993	AT1G09010.1  CDS  gene_syn F7G19.12, F7G19_12  go_component vacuole|GO:0005773|15539469|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycoside hydrolase family 2 protein  note glycoside hydrolase family 2 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 2 (InterPro:IPR006101), Glycoside hydrolase family 2, immunoglobulin-like beta-sandwich (InterPro:IPR006102), Glycoside hydrolase family 2, carbohydrate-binding (InterPro:IPR006104), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycoside hydrolase, families 2 and 20, immunoglobulin-like beta-sandwich (InterPro:IPR013812), Galactose-binding like (InterPro:IPR008979); Has 2679 Blast hits to 2667 proteins in 658 species: Archae - 2; Bacteria - 1822; Metazoa - 211; Fungi - 187; Plants - 24; Viruses - 0; Other Eukaryotes - 433 (source: NCBI BLink).  protein_id AT1G09010.1p  transcript_id AT1G09010.1  protein_id AT1G09010.1p  transcript_id AT1G09010.1  
At1g09020	chr1:002904088	0.0	C/2904088-2904212,2903853-2903940,2903243-2903419,2902839-2902961,2902652-2902711,2902352-2902441,2902037-2902171,2901728-2901872,2901266-2901439,2900815-2900878,2900658-2900727,2900348-2900465,2900149-2900243	AT1G09020.1  CDS  gene_syn ATSNF4, F7G19.11, F7G19_11, HOMOLOG OF YEAST SUCROSE NONFERMENTING 4, PUTATIVE ACTIVATOR SUBUNIT OF SNF1-RELATED PROTEIN KINASE SNF4, SNF4  gene SNF4  function putative activator subunit of SNF1-related protein kinase  go_process cellular response to glucose starvation|GO:0042149|10929106|IDA  go_function protein kinase activator activity|GO:0030295|10929106|ISS  product SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4); protein kinase activator  note HOMOLOG OF YEAST SUCROSE NONFERMENTING 4 (SNF4); FUNCTIONS IN: protein kinase activator activity; INVOLVED IN: cellular response to glucose starvation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: 5 -AMP-activated protein kinase-related (TAIR:AT1G27070.1); Has 997 Blast hits to 990 proteins in 184 species: Archae - 8; Bacteria - 62; Metazoa - 510; Fungi - 205; Plants - 126; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT1G09020.1p  transcript_id AT1G09020.1  protein_id AT1G09020.1p  transcript_id AT1G09020.1  
At1g09026	chr1:002907124	0.0	W/2907124-2907279	AT1G09026.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G09026.1p  transcript_id AT1G09026.1  protein_id AT1G09026.1p  transcript_id AT1G09026.1  
At1g09030	chr1:002908611	0.0	C/2908611-2909030	AT1G09030.1  CDS  gene_syn F7G19.10, F7G19_10, NF-YB4, NUCLEAR FACTOR Y, SUBUNIT B4  gene NF-YB4  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YB4 (NUCLEAR FACTOR Y, SUBUNIT B4); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT B4 (NF-YB4); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: NF-YB5 (NUCLEAR FACTOR Y, SUBUNIT B5); transcription factor (TAIR:AT2G47810.1); Has 986 Blast hits to 986 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 384; Fungi - 232; Plants - 286; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT1G09030.1p  transcript_id AT1G09030.1  protein_id AT1G09030.1p  transcript_id AT1G09030.1  
At1g09040	chr1:002912362	0.0	W/2912362-2913087,2913165-2915174	AT1G09040.1  CDS  gene_syn F7G19.9, F7G19_9  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09050.1); Has 533 Blast hits to 493 proteins in 75 species: Archae - 2; Bacteria - 8; Metazoa - 323; Fungi - 23; Plants - 43; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).  protein_id AT1G09040.1p  transcript_id AT1G09040.1  protein_id AT1G09040.1p  transcript_id AT1G09040.1  
At1g09050	chr1:002918031	0.0	W/2918031-2918756,2918834-2920858	AT1G09050.1  CDS  gene_syn F7G19.8, F7G19_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09040.1); Has 455 Blast hits to 403 proteins in 85 species: Archae - 0; Bacteria - 59; Metazoa - 236; Fungi - 10; Plants - 40; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT1G09050.1p  transcript_id AT1G09050.1  protein_id AT1G09050.1p  transcript_id AT1G09050.1  
At1g09060	chr1:002924649	0.0	C/2924649-2925212,2924406-2924548,2924209-2924308,2923973-2924105,2923826-2923880,2923072-2923717,2922664-2922993,2922155-2922526,2921993-2922062,2921818-2921903,2921610-2921729,2921439-2921509,2921235-2921337	AT1G09060.1  CDS  gene_syn F7G19.7, F7G19_7  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function transcription factor activity|GO:0003700||ISS  product transcription factor jumonji (jmjC) domain-containing protein  note transcription factor jumonji (jmjC) domain-containing protein; FUNCTIONS IN: protein binding, transcription factor activity, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, RING-type (InterPro:IPR001841), Transcription factor jumonji (InterPro:IPR013129), WRC (InterPro:IPR014977); BEST Arabidopsis thaliana protein match is: transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT4G00990.1); Has 767 Blast hits to 730 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 336; Fungi - 20; Plants - 372; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT1G09060.1p  transcript_id AT1G09060.1  protein_id AT1G09060.1p  transcript_id AT1G09060.1  
At1g09060	chr1:002924649	0.0	C/2924649-2925212,2924406-2924548,2924209-2924308,2923973-2924105,2923826-2923880,2923072-2923717,2922664-2922993,2922155-2922526,2921993-2922062,2921818-2921903,2921610-2921729,2921439-2921509,2921235-2921337	AT1G09060.2  CDS  gene_syn F7G19.7, F7G19_7  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function transcription factor activity|GO:0003700||ISS  product transcription factor jumonji (jmjC) domain-containing protein  note transcription factor jumonji (jmjC) domain-containing protein; FUNCTIONS IN: protein binding, transcription factor activity, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, RING-type (InterPro:IPR001841), Transcription factor jumonji (InterPro:IPR013129), WRC (InterPro:IPR014977); BEST Arabidopsis thaliana protein match is: transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT4G00990.1); Has 767 Blast hits to 730 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 336; Fungi - 20; Plants - 372; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT1G09060.2p  transcript_id AT1G09060.2  protein_id AT1G09060.2p  transcript_id AT1G09060.2  
At1g09060	chr1:002924649	0.0	C/2924649-2925254,2924406-2924548,2924209-2924308,2923973-2924105,2923826-2923880,2923072-2923717,2922664-2922993,2922155-2922526,2921993-2922062,2921818-2921903,2921610-2921729,2921439-2921509,2921235-2921337	AT1G09060.3  CDS  gene_syn F7G19.7, F7G19_7  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function transcription factor activity|GO:0003700||ISS  product transcription factor jumonji (jmjC) domain-containing protein  note transcription factor jumonji (jmjC) domain-containing protein; FUNCTIONS IN: protein binding, transcription factor activity, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, RING-type (InterPro:IPR001841), Transcription factor jumonji (InterPro:IPR013129), WRC (InterPro:IPR014977); BEST Arabidopsis thaliana protein match is: transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT4G00990.1); Has 767 Blast hits to 730 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 336; Fungi - 20; Plants - 372; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT1G09060.3p  transcript_id AT1G09060.3  protein_id AT1G09060.3p  transcript_id AT1G09060.3  
At1g09070	chr1:002927767	0.0	W/2927767-2928741	AT1G09070.1  CDS  gene_syn (AT)SRC2, F7G19.6, F7G19_6, SOYBEAN GENE REGULATED BY COLD-2, SRC2  gene SRC2  function SRC2 specifically binds the peptide PIEPPPHH, and moves from ER to a vacuole fraction where it gets internalized. Involved in Protein Storage Vacuole targeting.  go_component protein storage vacuole|GO:0000326|16227454|IDA  go_component endoplasmic reticulum|GO:0005783|16227454|IDA  go_process protein targeting to vacuole|GO:0006623|16227454|TAS  go_function protein binding|GO:0005515|16227454|IPI  product SRC2 (SOYBEAN GENE REGULATED BY COLD-2); protein binding  note SOYBEAN GENE REGULATED BY COLD-2 (SRC2); FUNCTIONS IN: protein binding; INVOLVED IN: protein targeting to vacuole; LOCATED IN: endoplasmic reticulum, protein storage vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: XYPPX repeat (InterPro:IPR006031), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT3G16510.1); Has 22005 Blast hits to 13300 proteins in 863 species: Archae - 4; Bacteria - 1898; Metazoa - 13015; Fungi - 2688; Plants - 2401; Viruses - 77; Other Eukaryotes - 1922 (source: NCBI BLink).  protein_id AT1G09070.1p  transcript_id AT1G09070.1  protein_id AT1G09070.1p  transcript_id AT1G09070.1  
At1g09080	chr1:002931732	0.0	C/2931732-2931804,2931376-2931670,2931069-2931280,2930177-2930899,2929844-2930081,2929268-2929754	AT1G09080.1  CDS  gene_syn BIP3, F7G19.5, F7G19_5  gene BIP3  go_function ATP binding|GO:0005524||IEA  go_component endoplasmic reticulum lumen|GO:0005788|11402207|TAS  go_process protein folding|GO:0006457|11402207|TAS  go_process protein folding|GO:0006457||ISS  go_process response to heat|GO:0009408|8888624|IDA  product BIP3; ATP binding  note BIP3; FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to heat; LOCATED IN: endoplasmic reticulum lumen; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: BIP1; ATP binding (TAIR:AT5G28540.1); Has 26457 Blast hits to 25988 proteins in 3101 species: Archae - 107; Bacteria - 10098; Metazoa - 3384; Fungi - 1229; Plants - 717; Viruses - 260; Other Eukaryotes - 10662 (source: NCBI BLink).  protein_id AT1G09080.1p  transcript_id AT1G09080.1  protein_id AT1G09080.1p  transcript_id AT1G09080.1  
At1g09090	chr1:002932743	0.0	W/2932743-2933127,2933284-2933443,2933558-2933606,2933696-2933809,2933952-2934389,2934549-2934935,2935061-2935156,2935268-2935383,2935467-2935569,2935644-2935717,2935797-2936296,2936386-2936495	AT1G09090.2  CDS  gene_syn ATRBOHB, F7G19.4, F7G19_4, respiratory burst oxidase homolog B  gene ATRBOHB  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function iron ion binding|GO:0005506||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor|GO:0050664||IEA  go_process defense response|GO:0006952|9490748|TAS  go_process defense response|GO:0006952|9628030|TAS  go_process response to heat|GO:0009408|15923322|IMP  product ATRBOHB (respiratory burst oxidase homolog B); FAD binding / calcium ion binding / electron carrier/ iron ion binding / oxidoreductase/ oxidoreductase, acting on NADH or NADPH, with oxygen as acceptor / peroxidase  note respiratory burst oxidase homolog B (ATRBOHB); FUNCTIONS IN: in 7 functions; INVOLVED IN: response to heat, defense response; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-Hand type (InterPro:IPR011992), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), Ferric reductase, NAD binding (InterPro:IPR013121), NADPH oxidase Respiratory burst (InterPro:IPR013623), EF-HAND 2 (InterPro:IPR018249), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: RBOHD (RESPIRATORY BURST OXIDASE HOMOLOGUE D); NAD(P)H oxidase (TAIR:AT5G47910.1); Has 1565 Blast hits to 1460 proteins in 219 species: Archae - 2; Bacteria - 104; Metazoa - 602; Fungi - 472; Plants - 265; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).  protein_id AT1G09090.2p  transcript_id AT1G09090.2  protein_id AT1G09090.2p  transcript_id AT1G09090.2  
At1g09090	chr1:002932743	0.0	W/2932743-2933127,2933284-2933443,2933558-2933606,2933696-2933809,2933952-2934389,2934549-2934935,2935061-2935156,2935268-2935383,2935467-2935590	AT1G09090.1  CDS  gene_syn ATRBOHB, F7G19.4, F7G19_4, respiratory burst oxidase homolog B  gene ATRBOHB  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function iron ion binding|GO:0005506||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor|GO:0050664||IEA  go_process defense response|GO:0006952|9490748|TAS  go_process defense response|GO:0006952|9628030|TAS  go_process response to heat|GO:0009408|15923322|IMP  product ATRBOHB (respiratory burst oxidase homolog B); FAD binding / calcium ion binding / electron carrier/ iron ion binding / oxidoreductase/ oxidoreductase, acting on NADH or NADPH, with oxygen as acceptor / peroxidase  note respiratory burst oxidase homolog B (ATRBOHB); FUNCTIONS IN: in 7 functions; INVOLVED IN: response to heat, defense response; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-Hand type (InterPro:IPR011992), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), NADPH oxidase Respiratory burst (InterPro:IPR013623), FAD-binding 8 (InterPro:IPR013112), EF-HAND 2 (InterPro:IPR018249), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: RBOHD (RESPIRATORY BURST OXIDASE HOMOLOGUE D); NAD(P)H oxidase (TAIR:AT5G47910.1); Has 1090 Blast hits to 1043 proteins in 174 species: Archae - 2; Bacteria - 49; Metazoa - 532; Fungi - 167; Plants - 257; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT1G09090.1p  transcript_id AT1G09090.1  protein_id AT1G09090.1p  transcript_id AT1G09090.1  
At1g09100	chr1:002939142	0.0	C/2939142-2939258,2938681-2938797,2938334-2938441,2938024-2938215,2937734-2937925,2937519-2937637,2937354-2937441,2937153-2937272,2936832-2936972,2936675-2936752	AT1G09100.1  CDS  gene_syn 26S proteasome AAA-ATPase subunit RPT5B, F7G19.2, F7G19_2, RPT5B  gene RPT5B  function Encodes RPT5b (Regulatory Particle 5b), one of the six AAA-ATPases of the proteasome regulatory particle. Essential for gametophyte development. In Arabidopsis, the RPT5 subunit is encoded by two highly homologous genes, RPT5a and RPT5b. RPT5a and RPT5b show accession-dependent functional redundancy. In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50% pollen lethality, indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession, a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte, whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process embryo sac development|GO:0009553|19223514|IGI  go_process pollen development|GO:0009555|19223514|IGI  go_process glucose mediated signaling|GO:0010255|17081979|IMP  go_process proteasomal protein catabolic process|GO:0010498|19223514|IGI  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function ATPase activity|GO:0016887||ISS  product RPT5B (26S proteasome AAA-ATPase subunit RPT5B); ATPase/ calmodulin binding  note 26S proteasome AAA-ATPase subunit RPT5B (RPT5B); FUNCTIONS IN: calmodulin binding, ATPase activity; INVOLVED IN: glucose mediated signaling, proteasomal protein catabolic process, embryo sac development, pollen development; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A); ATPase/ calmodulin binding (TAIR:AT3G05530.1); Has 23018 Blast hits to 21463 proteins in 1801 species: Archae - 827; Bacteria - 6857; Metazoa - 4158; Fungi - 2385; Plants - 1712; Viruses - 37; Other Eukaryotes - 7042 (source: NCBI BLink).  protein_id AT1G09100.1p  transcript_id AT1G09100.1  protein_id AT1G09100.1p  transcript_id AT1G09100.1  
At1g09110	chr1:002939417	0.0	W/2939417-2939488	AT1G09110.1  tRNA  gene_syn 50888.TRNA-GLU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Glu (anticodon: TTC)  transcript_id AT1G09110.1  
At1g09130	chr1:002941909	0.0	C/2941909-2942217,2941547-2941648,2941351-2941473,2941213-2941272,2940958-2941054,2940797-2940870,2940523-2940576,2940365-2940448,2940063-2940152	AT1G09130.1  CDS  gene_syn F7G19.1, F7G19_1  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastid stroma|GO:0009532|14593120|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process proteolysis|GO:0006508||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component chloroplast stroma|GO:0009570|11278690|IDA  product ATP-dependent Clp protease proteolytic subunit, putative  note ATP-dependent Clp protease proteolytic subunit, putative; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLPR1; serine-type endopeptidase (TAIR:AT1G49970.1); Has 8201 Blast hits to 8199 proteins in 1643 species: Archae - 0; Bacteria - 4098; Metazoa - 115; Fungi - 50; Plants - 684; Viruses - 3; Other Eukaryotes - 3251 (source: NCBI BLink).  protein_id AT1G09130.1p  transcript_id AT1G09130.1  protein_id AT1G09130.1p  transcript_id AT1G09130.1  
At1g09130	chr1:002941909	0.0	C/2941909-2942217,2941547-2941648,2941351-2941473,2941213-2941272,2940958-2941054,2940797-2940870,2940523-2940576,2940365-2940448,2940063-2940152	AT1G09130.2  CDS  gene_syn F7G19.1, F7G19_1  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_process proteolysis|GO:0006508||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component chloroplast stroma|GO:0009570|11278690|IDA  product ATP-dependent Clp protease proteolytic subunit, putative  note ATP-dependent Clp protease proteolytic subunit, putative; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: thylakoid, mitochondrion, chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLPR1; serine-type endopeptidase (TAIR:AT1G49970.1); Has 8201 Blast hits to 8199 proteins in 1643 species: Archae - 0; Bacteria - 4098; Metazoa - 115; Fungi - 50; Plants - 684; Viruses - 3; Other Eukaryotes - 3251 (source: NCBI BLink).  protein_id AT1G09130.2p  transcript_id AT1G09130.2  protein_id AT1G09130.2p  transcript_id AT1G09130.2  
At1g09140	chr1:002945732	0.0	C/2945732-2945818,2945543-2945608,2945382-2945456,2945200-2945302,2945068-2945114,2944903-2944960,2944730-2944779,2944530-2944586,2944344-2944456,2944169-2944246,2943169-2943226,2942887-2942901	AT1G09140.1  CDS  gene_syn ATSRP30, ATSRP30.1, ATSRP30.2, SERINE-ARGININE PROTEIN 30, T12M4.19, T12M4_19  function Encodes a serine-arginine rich RNA binding protein involved in regulation of splicing (including splicing of itself). Exists as 3 alternative spliced forms that are differentially expressed.  go_function RNA binding|GO:0003723||ISS  product SF2/ASF-like splicing modulator (SRP30)  note SF2/ASF-like splicing modulator (SRP30); FUNCTIONS IN: RNA binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: SR1; RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT1G02840.3); Has 8689 Blast hits to 7061 proteins in 333 species: Archae - 0; Bacteria - 183; Metazoa - 5692; Fungi - 854; Plants - 976; Viruses - 86; Other Eukaryotes - 898 (source: NCBI BLink).  protein_id AT1G09140.1p  transcript_id AT1G09140.1  protein_id AT1G09140.1p  transcript_id AT1G09140.1  
At1g09140	chr1:002945732	0.0	C/2945732-2945818,2945543-2945608,2945382-2945456,2945200-2945302,2945068-2945114,2944903-2944960,2944730-2944779,2944530-2944586,2944344-2944456,2944169-2944246,2943528-2943564	AT1G09140.2  CDS  gene_syn ATSRP30, ATSRP30.1, ATSRP30.2, SERINE-ARGININE PROTEIN 30, T12M4.19, T12M4_19  function Encodes a serine-arginine rich RNA binding protein involved in regulation of splicing (including splicing of itself). Exists as 3 alternative spliced forms that are differentially expressed.  go_function RNA binding|GO:0003723||ISS  product SF2/ASF-like splicing modulator (SRP30)  note SF2/ASF-like splicing modulator (SRP30); FUNCTIONS IN: RNA binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: SR1; RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT1G02840.3); Has 6059 Blast hits to 5657 proteins in 304 species: Archae - 0; Bacteria - 171; Metazoa - 3682; Fungi - 718; Plants - 881; Viruses - 6; Other Eukaryotes - 601 (source: NCBI BLink).  protein_id AT1G09140.2p  transcript_id AT1G09140.2  protein_id AT1G09140.2p  transcript_id AT1G09140.2  
At1g09150	chr1:002946599	0.0	W/2946599-2946609,2947210-2947291,2947388-2947455,2947557-2947654,2948174-2948310,2948393-2948460,2948710-2948773,2948891-2948908	AT1G09150.1  CDS  gene_syn T12M4.18, T12M4_18  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein  note pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PUA-like (InterPro:IPR015947), PUA (InterPro:IPR002478), Translation machinery-associated RNA binding protein, predicted (InterPro:IPR016437), Uncharacterized domain 2 (InterPro:IPR004521); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor SUI1 family protein (TAIR:AT1G71350.1); Has 649 Blast hits to 647 proteins in 208 species: Archae - 99; Bacteria - 0; Metazoa - 263; Fungi - 102; Plants - 42; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).  protein_id AT1G09150.1p  transcript_id AT1G09150.1  protein_id AT1G09150.1p  transcript_id AT1G09150.1  
At1g09155	chr1:002950594	0.0	C/2950594-2950842,2950407-2950525,2949831-2950332	AT1G09155.1  CDS  gene_syn AtPP2-B15, Phloem protein 2-B15  gene AtPP2-B15  go_component endomembrane system|GO:0012505||IEA  go_function carbohydrate binding|GO:0030246|12529520|ISS  product AtPP2-B15 (Phloem protein 2-B15); carbohydrate binding  note Phloem protein 2-B15 (AtPP2-B15); FUNCTIONS IN: carbohydrate binding; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: AtPP2-B13 (Phloem protein 2-B13); carbohydrate binding (TAIR:AT1G56240.1); Has 316 Blast hits to 309 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 316; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G09155.1p  transcript_id AT1G09155.1  protein_id AT1G09155.1p  transcript_id AT1G09155.1  
At1g09157	chr1:002951665	0.0	C/2951665-2952396	AT1G09157.1  CDS  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF679 (InterPro:IPR007770); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39650.1); Has 153 Blast hits to 146 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G09157.1p  transcript_id AT1G09157.1  protein_id AT1G09157.1p  transcript_id AT1G09157.1  
At1g09160	chr1:002954850	0.0	C/2954850-2955059,2954600-2954771,2954290-2954507,2954055-2954162,2953846-2953971,2953530-2953762,2953199-2953418	AT1G09160.1  CDS  gene_syn T12M4.15, T12M4_15  go_component plasma membrane|GO:0005886|17644812|IDA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C-related / PP2C-related  note protein phosphatase 2C-related / PP2C-related; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C-related / PP2C-related (TAIR:AT1G68410.2); Has 3607 Blast hits to 3606 proteins in 325 species: Archae - 2; Bacteria - 224; Metazoa - 1014; Fungi - 326; Plants - 1178; Viruses - 7; Other Eukaryotes - 856 (source: NCBI BLink).  protein_id AT1G09160.1p  transcript_id AT1G09160.1  protein_id AT1G09160.1p  transcript_id AT1G09160.1  
At1g09160	chr1:002954850	0.0	C/2954850-2955059,2954600-2954771,2954290-2954507,2954055-2954162,2953846-2953971,2953530-2953762,2953199-2953418	AT1G09160.2  CDS  gene_syn T12M4.15, T12M4_15  go_component plasma membrane|GO:0005886|17644812|IDA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C-related / PP2C-related  note protein phosphatase 2C-related / PP2C-related; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C-related / PP2C-related (TAIR:AT1G68410.2); Has 3607 Blast hits to 3606 proteins in 325 species: Archae - 2; Bacteria - 224; Metazoa - 1014; Fungi - 326; Plants - 1178; Viruses - 7; Other Eukaryotes - 856 (source: NCBI BLink).  protein_id AT1G09160.2p  transcript_id AT1G09160.2  protein_id AT1G09160.2p  transcript_id AT1G09160.2  
At1g09170	chr1:002962081	0.0	C/2962081-2962207,2961592-2961791,2961206-2961349,2960821-2961069,2960666-2960737,2960511-2960579,2960310-2960402,2960014-2960178,2959827-2959908,2959592-2959687,2959303-2959479,2959016-2959122,2958846-2958921,2958484-2958640,2957969-2958222,2957667-2957830,2957371-2957571,2956806-2957269,2956589-2956724	AT1G09170.1  CDS  gene_syn T12M4.14, T12M4_14  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product kinesin motor protein-related  note kinesin motor protein-related; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex; EXPRESSED IN: shoot, male gametophyte, flower, root, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATK4 (ARABIDOPSIS THALIANA KINESIN 4); ATPase/ microtubule binding / microtubule motor (TAIR:AT5G27000.1); Has 8470 Blast hits to 7806 proteins in 330 species: Archae - 0; Bacteria - 66; Metazoa - 4315; Fungi - 989; Plants - 928; Viruses - 0; Other Eukaryotes - 2172 (source: NCBI BLink).  protein_id AT1G09170.1p  transcript_id AT1G09170.1  protein_id AT1G09170.1p  transcript_id AT1G09170.1  
At1g09176	chr1:002964152	0.0	W/2964152-2964604	AT1G09176.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 84679 Blast hits to 16834 proteins in 1037 species: Archae - 92; Bacteria - 32279; Metazoa - 23225; Fungi - 4568; Plants - 8799; Viruses - 1044; Other Eukaryotes - 14672 (source: NCBI BLink).  protein_id AT1G09176.1p  transcript_id AT1G09176.1  protein_id AT1G09176.1p  transcript_id AT1G09176.1  
At1g09180	chr1:002965147	0.0	W/2965147-2965275,2965384-2965515,2965621-2965941	AT1G09180.1  CDS  gene_syn ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1, ATSAR1, ATSARA1A, SECRETION-ASSOCIATED RAS 1, T12M4.12, T12M4_12  gene ATSARA1A  function A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.  go_component chloroplast|GO:0009507|15028209|IDA  go_process intracellular protein transport|GO:0006886||IEA  go_function GTP binding|GO:0005525|12644670|ISS  product ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1); GTP binding  note ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1 (ATSARA1A); FUNCTIONS IN: GTP binding; INVOLVED IN: intracellular protein transport; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), GTP-binding protein SAR1 (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ATSAR1B (SECRETION-ASSOCIATED RAS 1 B); GTP binding (TAIR:AT1G56330.1); Has 5162 Blast hits to 5159 proteins in 298 species: Archae - 2; Bacteria - 34; Metazoa - 2772; Fungi - 847; Plants - 666; Viruses - 0; Other Eukaryotes - 841 (source: NCBI BLink).  protein_id AT1G09180.1p  transcript_id AT1G09180.1  protein_id AT1G09180.1p  transcript_id AT1G09180.1  
At1g09190	chr1:002966263	0.0	C/2966263-2967717	AT1G09190.1  CDS  gene_syn T12M4.11, T12M4_11  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, sperm cell, embryo, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G56310.1); Has 12606 Blast hits to 4809 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 33; Plants - 12368; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).  protein_id AT1G09190.1p  transcript_id AT1G09190.1  protein_id AT1G09190.1p  transcript_id AT1G09190.1  
At1g09195	chr1:002971078	0.0	C/2971078-2971138,2970363-2970721,2969982-2970134,2969763-2969804,2969575-2969655,2969375-2969494,2968970-2969077,2968720-2968758	AT1G09195.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Ppx/GppA phosphatase (InterPro:IPR003695); Has 1514 Blast hits to 1514 proteins in 543 species: Archae - 16; Bacteria - 1249; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 233 (source: NCBI BLink).  protein_id AT1G09195.1p  transcript_id AT1G09195.1  protein_id AT1G09195.1p  transcript_id AT1G09195.1  
At1g09200	chr1:002971722	0.0	C/2971722-2972132	AT1G09200.1  CDS  gene_syn T12M4.9  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product histone H3  note histone H3; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, chloroplast, nucleosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H3 (TAIR:AT5G65360.1); Has 10220 Blast hits to 10217 proteins in 5279 species: Archae - 0; Bacteria - 0; Metazoa - 7338; Fungi - 1307; Plants - 999; Viruses - 0; Other Eukaryotes - 576 (source: NCBI BLink).  protein_id AT1G09200.1p  transcript_id AT1G09200.1  protein_id AT1G09200.1p  transcript_id AT1G09200.1  
At1g09210	chr1:002976562	0.0	C/2976562-2976655,2975849-2975956,2975562-2975754,2975206-2975464,2974928-2975032,2974755-2974841,2974615-2974672,2974040-2974107,2973859-2973954,2973718-2973765,2973527-2973556,2973326-2973442,2973217-2973228	AT1G09210.1  CDS  gene_syn T12M4.8, T12M4_8  go_component vacuole|GO:0005773|15539469|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function calcium ion binding|GO:0005509||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process response to oxidative stress|GO:0006979|12492832|IDA  go_function calcium ion binding|GO:0005509||ISS  product calreticulin 2 (CRT2)  note calreticulin 2 (CRT2); FUNCTIONS IN: unfolded protein binding, calcium ion binding; INVOLVED IN: response to oxidative stress, response to salt stress; LOCATED IN: mitochondrion, endoplasmic reticulum, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Calreticulin/calnexin, P (InterPro:IPR009033), Calreticulin/calnexin (InterPro:IPR001580), Calreticulin/calnexin, conserved site (InterPro:IPR018124), Calreticulin (InterPro:IPR009169), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: CRT1 (CALRETICULIN 1); calcium ion binding / unfolded protein binding (TAIR:AT1G56340.2); Has 6897 Blast hits to 3331 proteins in 371 species: Archae - 6; Bacteria - 265; Metazoa - 3811; Fungi - 490; Plants - 317; Viruses - 187; Other Eukaryotes - 1821 (source: NCBI BLink).  protein_id AT1G09210.1p  transcript_id AT1G09210.1  protein_id AT1G09210.1p  transcript_id AT1G09210.1  
At1g09220	chr1:002977952	0.0	C/2977952-2978968	AT1G09220.1  CDS  gene_syn T12M4.7, T12M4_7  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cytosolic ribosome; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G56310.1); Has 11726 Blast hits to 4343 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 10; Plants - 11583; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT1G09220.1p  transcript_id AT1G09220.1  protein_id AT1G09220.1p  transcript_id AT1G09220.1  
At1g09230	chr1:002982376	0.0	C/2982376-2982563,2982090-2982161,2981778-2981987,2981541-2981622,2981258-2981398,2980851-2981012,2980605-2980778,2980211-2980298,2980022-2980080,2979877-2979942,2979637-2979723	AT1G09230.1  CDS  gene_syn T12M4.6, T12M4_6  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); Has 680 Blast hits to 677 proteins in 103 species: Archae - 0; Bacteria - 6; Metazoa - 512; Fungi - 46; Plants - 61; Viruses - 1; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT1G09230.1p  transcript_id AT1G09230.1  protein_id AT1G09230.1p  transcript_id AT1G09230.1  
At1g09240	chr1:002984950	0.0	W/2984950-2985912	AT1G09240.1  CDS  gene_syn ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 3, ATNAS3, NAS3, NICOTIANAMINE SYNTHASE 3, T12M4.5, T12M4_5  gene NAS3  function Encodes a nicotianamine synthase.  go_process nicotianamine biosynthetic process|GO:0030418||IDA  go_function nicotianamine synthase activity|GO:0030410||IDA  product NAS3 (NICOTIANAMINE SYNTHASE 3); nicotianamine synthase  note NICOTIANAMINE SYNTHASE 3 (NAS3); FUNCTIONS IN: nicotianamine synthase activity; INVOLVED IN: nicotianamine biosynthetic process; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Nicotianamine synthase (InterPro:IPR004298); BEST Arabidopsis thaliana protein match is: NAS4 (NICOTIANAMINE SYNTHASE 4); nicotianamine synthase (TAIR:AT1G56430.1); Has 133 Blast hits to 131 proteins in 31 species: Archae - 14; Bacteria - 2; Metazoa - 0; Fungi - 17; Plants - 99; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G09240.1p  transcript_id AT1G09240.1  protein_id AT1G09240.1p  transcript_id AT1G09240.1  
At1g09245	chr1:002986948	0.0	C/2986948-2987367	AT1G09245.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51250.1); Has 37 Blast hits to 37 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G09245.1p  transcript_id AT1G09245.1  protein_id AT1G09245.1p  transcript_id AT1G09245.1  
At1g09250	chr1:002989509	0.0	W/2989509-2990132	AT1G09250.1  CDS  gene_syn T12M4.4, T12M4_4  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|12679534|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT3G06590.2); Has 120 Blast hits to 120 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G09250.1p  transcript_id AT1G09250.1  protein_id AT1G09250.1p  transcript_id AT1G09250.1  
At1g09260	chr1:002993404	0.0	W/2993404-2993820	AT1G09260.1  CDS  gene_syn T12M4.3, T12M4_3  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G25560.1); Has 1800 Blast hits to 1800 proteins in 469 species: Archae - 31; Bacteria - 623; Metazoa - 528; Fungi - 152; Plants - 208; Viruses - 3; Other Eukaryotes - 255 (source: NCBI BLink).  protein_id AT1G09260.1p  transcript_id AT1G09260.1  protein_id AT1G09260.1p  transcript_id AT1G09260.1  
At1g09270	chr1:002994506	0.0	W/2994506-2994736,2995147-2995243,2995345-2995436,2995537-2995668,2995893-2996078,2996227-2996390,2996638-2996716,2996801-2996929,2997202-2997329,2997455-2997833	AT1G09270.1  CDS  gene_syn IMPA-4, IMPORTIN ALPHA ISOFORM 4, T12M4.2, T12M4_2  gene IMPA-4  function Protein interacts with Agrobacterium proteins VirD2 and VirE2.  go_component nucleus|GO:0005634||IEA  go_component nuclear pore|GO:0005643||IEA  go_component cytoplasm|GO:0005737||IEA  go_function binding|GO:0005488||IEA  go_function protein transporter activity|GO:0008565||IEA  go_process intracellular protein transport|GO:0006886||ISS  go_process intracellular protein transport in host|GO:0030581|18836040|IPI  go_process host response to induction by symbiont of tumor, nodule or growth in host|GO:0080034|18836040|IMP  go_function protein transporter activity|GO:0008565||ISS  product IMPA-4 (IMPORTIN ALPHA ISOFORM 4); binding / protein transporter  note IMPORTIN ALPHA ISOFORM 4 (IMPA-4); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, intracellular protein transport in host, host response to induction by symbiont of tumor, nodule or growth in host; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Importin-alpha-like, importin-beta-binding region (InterPro:IPR002652), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: IMPA-1 (IMPORTIN ALPHA ISOFORM 1); binding / protein transporter (TAIR:AT3G06720.2); Has 2981 Blast hits to 2230 proteins in 218 species: Archae - 2; Bacteria - 6; Metazoa - 1458; Fungi - 408; Plants - 587; Viruses - 0; Other Eukaryotes - 520 (source: NCBI BLink).  protein_id AT1G09270.1p  transcript_id AT1G09270.1  protein_id AT1G09270.1p  transcript_id AT1G09270.1  
At1g09270	chr1:002994506	0.0	W/2994506-2994736,2995147-2995243,2995345-2995436,2995537-2995668,2995893-2996078,2996227-2996390,2996638-2996716,2996801-2996929,2997202-2997329,2997455-2997833	AT1G09270.2  CDS  gene_syn IMPA-4, IMPORTIN ALPHA ISOFORM 4, T12M4.2, T12M4_2  gene IMPA-4  function Protein interacts with Agrobacterium proteins VirD2 and VirE2.  go_component nucleus|GO:0005634||IEA  go_component nuclear pore|GO:0005643||IEA  go_component cytoplasm|GO:0005737||IEA  go_function binding|GO:0005488||IEA  go_function protein transporter activity|GO:0008565||IEA  go_process intracellular protein transport|GO:0006886||ISS  go_process intracellular protein transport in host|GO:0030581|18836040|IPI  go_process host response to induction by symbiont of tumor, nodule or growth in host|GO:0080034|18836040|IMP  go_function protein transporter activity|GO:0008565||ISS  product IMPA-4 (IMPORTIN ALPHA ISOFORM 4); binding / protein transporter  note IMPORTIN ALPHA ISOFORM 4 (IMPA-4); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, intracellular protein transport in host, host response to induction by symbiont of tumor, nodule or growth in host; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Importin-alpha-like, importin-beta-binding region (InterPro:IPR002652), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: IMPA-1 (IMPORTIN ALPHA ISOFORM 1); binding / protein transporter (TAIR:AT3G06720.2); Has 2981 Blast hits to 2230 proteins in 218 species: Archae - 2; Bacteria - 6; Metazoa - 1458; Fungi - 408; Plants - 587; Viruses - 0; Other Eukaryotes - 520 (source: NCBI BLink).  protein_id AT1G09270.2p  transcript_id AT1G09270.2  protein_id AT1G09270.2p  transcript_id AT1G09270.2  
At1g09270	chr1:002995162	0.0	W/2995162-2995243,2995345-2995436,2995537-2995668,2995893-2996078,2996227-2996390,2996638-2996716,2996801-2996929,2997202-2997329,2997455-2997833	AT1G09270.3  CDS  gene_syn IMPA-4, IMPORTIN ALPHA ISOFORM 4, T12M4.2, T12M4_2  gene IMPA-4  function Protein interacts with Agrobacterium proteins VirD2 and VirE2.  go_component nucleus|GO:0005634||IEA  go_component nuclear pore|GO:0005643||IEA  go_component cytoplasm|GO:0005737||IEA  go_function binding|GO:0005488||IEA  go_function protein transporter activity|GO:0008565||IEA  go_process intracellular protein transport|GO:0006886||ISS  go_process intracellular protein transport in host|GO:0030581|18836040|IPI  go_process host response to induction by symbiont of tumor, nodule or growth in host|GO:0080034|18836040|IMP  go_function protein transporter activity|GO:0008565||ISS  product IMPA-4 (IMPORTIN ALPHA ISOFORM 4); binding / protein transporter  note IMPORTIN ALPHA ISOFORM 4 (IMPA-4); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, intracellular protein transport in host, host response to induction by symbiont of tumor, nodule or growth in host; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Importin-alpha-like, importin-beta-binding region (InterPro:IPR002652), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: IMPA-1 (IMPORTIN ALPHA ISOFORM 1); binding / protein transporter (TAIR:AT3G06720.2); Has 2915 Blast hits to 2179 proteins in 215 species: Archae - 2; Bacteria - 4; Metazoa - 1438; Fungi - 405; Plants - 546; Viruses - 0; Other Eukaryotes - 520 (source: NCBI BLink).  protein_id AT1G09270.3p  transcript_id AT1G09270.3  protein_id AT1G09270.3p  transcript_id AT1G09270.3  
At1g09280	chr1:003001062	0.0	C/3001062-3001253,3000556-3000717,3000028-3000133,2999755-2999935,2999587-2999668,2999426-2999508,2999204-2999336,2999028-2999127,2998209-2998915	AT1G09280.1  CDS  gene_syn T12M4.1, T12M4_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Protein of unknown function DUF341 (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: rhodanese-like domain-containing protein (TAIR:AT2G40760.1); Has 4342 Blast hits to 4339 proteins in 940 species: Archae - 0; Bacteria - 1695; Metazoa - 138; Fungi - 282; Plants - 108; Viruses - 0; Other Eukaryotes - 2119 (source: NCBI BLink).  protein_id AT1G09280.1p  transcript_id AT1G09280.1  protein_id AT1G09280.1p  transcript_id AT1G09280.1  
At1g09290	chr1:003003508	0.0	C/3003508-3003715,3003260-3003306,3002922-3003060,3002641-3002827,3002192-3002321,3001926-3002102,3001682-3001840	AT1G09290.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; Has 42 Blast hits to 42 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 30; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G09290.1p  transcript_id AT1G09290.1  protein_id AT1G09290.1p  transcript_id AT1G09290.1  
At1g09300	chr1:003003981	0.0	W/3003981-3004028,3004361-3004435,3004515-3004778,3004868-3004960,3005073-3005279,3005775-3005878,3005993-3006059,3006141-3006248,3006612-3006704,3006999-3007083,3007290-3007360,3007686-3007741,3007921-3008131	AT1G09300.1  CDS  gene_syn T31J12.2, T31J12_2  go_component mitochondrion|GO:0005739||IEA  go_process proteolysis|GO:0006508||IEA  go_process cellular process|GO:0009987||IEA  go_function aminopeptidase activity|GO:0004177||IEA  go_function metalloexopeptidase activity|GO:0008235||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function metallopeptidase activity|GO:0008237||ISS  product metallopeptidase M24 family protein  note metallopeptidase M24 family protein; FUNCTIONS IN: metallopeptidase activity, manganese ion binding, metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis, cellular process; LOCATED IN: mitochondrion; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal (InterPro:IPR007865), Peptidase M24, structural domain (InterPro:IPR000994), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: aminopeptidase/ manganese ion binding (TAIR:AT4G29490.1); Has 10472 Blast hits to 10446 proteins in 1515 species: Archae - 187; Bacteria - 5828; Metazoa - 520; Fungi - 371; Plants - 118; Viruses - 0; Other Eukaryotes - 3448 (source: NCBI BLink).  protein_id AT1G09300.1p  transcript_id AT1G09300.1  protein_id AT1G09300.1p  transcript_id AT1G09300.1  
At1g09300	chr1:003004485	0.0	W/3004485-3004778,3004868-3004960,3005073-3005279,3005775-3005878,3005993-3006059,3006141-3006248,3006612-3006704,3006999-3007083,3007290-3007360,3007686-3007741,3007921-3008131	AT1G09300.2  CDS  gene_syn T31J12.2, T31J12_2  go_process proteolysis|GO:0006508||IEA  go_process cellular process|GO:0009987||IEA  go_function aminopeptidase activity|GO:0004177||IEA  go_function metalloexopeptidase activity|GO:0008235||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function metallopeptidase activity|GO:0008237||ISS  product metallopeptidase M24 family protein  note metallopeptidase M24 family protein; FUNCTIONS IN: metallopeptidase activity, manganese ion binding, metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis, cellular process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal (InterPro:IPR007865), Peptidase M24, structural domain (InterPro:IPR000994), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: aminopeptidase/ manganese ion binding (TAIR:AT4G29490.1); Has 10502 Blast hits to 10476 proteins in 1514 species: Archae - 191; Bacteria - 5847; Metazoa - 520; Fungi - 373; Plants - 118; Viruses - 0; Other Eukaryotes - 3453 (source: NCBI BLink).  protein_id AT1G09300.2p  transcript_id AT1G09300.2  protein_id AT1G09300.2p  transcript_id AT1G09300.2  
At1g09310	chr1:003009109	0.0	W/3009109-3009648	AT1G09310.1  CDS  gene_syn T31J12.3, T31J12_3  go_component apoplast|GO:0048046|18538804|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56580.1); Has 197 Blast hits to 195 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 4; Plants - 191; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G09310.1p  transcript_id AT1G09310.1  protein_id AT1G09310.1p  transcript_id AT1G09310.1  
At1g09320	chr1:003011623	0.0	C/3011623-3012228,3011018-3011494,3010430-3010885,3010270-3010284	AT1G09320.1  CDS  gene_syn T31J12.4, T31J12_4  go_component chloroplast|GO:0009507||IEA  go_function RNA binding|GO:0003723||IEA  go_process biological_process|GO:0008150||ND  product agenet domain-containing protein  note agenet domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein (TAIR:AT3G06520.1); Has 424 Blast hits to 179 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 3; Plants - 387; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G09320.1p  transcript_id AT1G09320.1  protein_id AT1G09320.1p  transcript_id AT1G09320.1  
At1g09330	chr1:003014886	0.0	C/3014886-3014903,3014518-3014580,3014225-3014428,3014044-3014103,3013246-3013372,3013003-3013091	AT1G09330.1  CDS  gene_syn T31J12.5, T31J12_5  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF846, eukaryotic (InterPro:IPR008564); Has 381 Blast hits to 381 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 150; Fungi - 100; Plants - 39; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).  protein_id AT1G09330.1p  transcript_id AT1G09330.1  protein_id AT1G09330.1p  transcript_id AT1G09330.1  
At1g09340	chr1:003015473	0.0	W/3015473-3015574,3016035-3016169,3016248-3016334,3016458-3016548,3016660-3016714,3016816-3016876,3017045-3017266,3017408-3017524,3017677-3017766,3017859-3018035	AT1G09340.1  CDS  gene_syn CHLOROPLAST RNA BINDING, CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA, CRB, CRUCIFERIN B, CSP41B  gene CRB  function Encodes CHLOROPLAST RNA BINDING (CRB), a putative RNA-binding protein. CRB is important for the proper functioning of the chloroplast. Mutations in CRB also affects the circadian system, altering the expression of both oscillator and output genes.  go_component vacuole|GO:0005773|15539469|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  go_component ribosome|GO:0005840|18398686|IDA  go_component plastoglobule|GO:0010287|16461379|IDA  go_component stromule|GO:0010319|16923014|IDA  go_process rRNA processing|GO:0006364|18398686|IGI  go_process circadian rhythm|GO:0007623|17617174|IEP  go_process circadian rhythm|GO:0007623|17617174|IMP  go_process response to cold|GO:0009409|16923014|IEP  go_process chloroplast organization|GO:0009658|17617174|IMP  go_process peptidyl-cysteine S-nitrosylation|GO:0018119|18297659|IDA  product CRB (CHLOROPLAST RNA BINDING); binding / catalytic/ coenzyme binding  note CHLOROPLAST RNA BINDING (CRB); FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: in 6 processes; LOCATED IN: in 10 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: CSP41A (CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA); mRNA binding / poly(U) binding (TAIR:AT3G63140.1); Has 3710 Blast hits to 3710 proteins in 718 species: Archae - 207; Bacteria - 1968; Metazoa - 95; Fungi - 41; Plants - 139; Viruses - 2; Other Eukaryotes - 1258 (source: NCBI BLink).  protein_id AT1G09340.1p  transcript_id AT1G09340.1  protein_id AT1G09340.1p  transcript_id AT1G09340.1  
At1g09350	chr1:003019888	0.0	W/3019888-3020193,3020284-3020607,3020761-3020912,3020992-3021214	AT1G09350.1  CDS  gene_syn Arabidopsis thaliana galactinol synthase 3, AtGolS3, F14J9.1, F14J9_1  gene AtGolS3  go_component cellular_component|GO:0005575||ND  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product AtGolS3 (Arabidopsis thaliana galactinol synthase 3); transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note Arabidopsis thaliana galactinol synthase 3 (AtGolS3); FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, hypocotyl; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: AtGolS2 (Arabidopsis thaliana galactinol synthase 2); transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT1G56600.1); Has 871 Blast hits to 870 proteins in 198 species: Archae - 0; Bacteria - 55; Metazoa - 224; Fungi - 186; Plants - 285; Viruses - 70; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT1G09350.1p  transcript_id AT1G09350.1  protein_id AT1G09350.1p  transcript_id AT1G09350.1  
At1g09360	chr1:003021802	0.0	W/3021802-3022368	AT1G09360.1  CDS  gene_syn F14J9.2, F14J9_2  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: enzyme inhibitor/ pectinesterase (TAIR:AT1G09370.1); Has 11 Blast hits to 11 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G09360.1p  transcript_id AT1G09360.1  protein_id AT1G09360.1p  transcript_id AT1G09360.1  
At1g09370	chr1:003024901	0.0	W/3024901-3025425	AT1G09370.1  CDS  gene_syn F14J9.3, F14J9_3  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  product enzyme inhibitor/ pectinesterase  note enzyme inhibitor/ pectinesterase; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, cotyledon; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT1G09360.1); Has 10 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G09370.1p  transcript_id AT1G09370.1  protein_id AT1G09370.1p  transcript_id AT1G09370.1  
At1g09380	chr1:003029144	0.0	C/3029144-3029322,3027691-3027753,3027498-3027614,3027159-3027411,3026887-3027045,3026648-3026799,3026351-3026552	AT1G09380.1  CDS  gene_syn F14J9.4, F14J9_4  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  product integral membrane family protein / nodulin MtN21-related  note integral membrane family protein / nodulin MtN21-related; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G07050.1); Has 3622 Blast hits to 3602 proteins in 598 species: Archae - 50; Bacteria - 1859; Metazoa - 6; Fungi - 2; Plants - 646; Viruses - 0; Other Eukaryotes - 1059 (source: NCBI BLink).  protein_id AT1G09380.1p  transcript_id AT1G09380.1  protein_id AT1G09380.1p  transcript_id AT1G09380.1  
At1g09390	chr1:003031264	0.0	W/3031264-3031519,3032117-3032308,3032387-3032553,3032666-3032930,3033183-3033415	AT1G09390.1  CDS  gene_syn F14J9.5, F14J9_5  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_process glycerol biosynthetic process|GO:0006114||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: glycerol biosynthetic process, lipid metabolic process; LOCATED IN: chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT1G56670.1); Has 1723 Blast hits to 1705 proteins in 124 species: Archae - 0; Bacteria - 149; Metazoa - 1; Fungi - 22; Plants - 1544; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G09390.1p  transcript_id AT1G09390.1  protein_id AT1G09390.1p  transcript_id AT1G09390.1  
At1g09400	chr1:003034968	0.0	C/3034968-3034993,3034725-3034865,3034519-3034649,3034276-3034434,3033676-3034193	AT1G09400.1  CDS  gene_syn F14J9.6, F14J9_6  go_component mitochondrion|GO:0005739||IEA  product 12-oxophytodienoate reductase, putative  note 12-oxophytodienoate reductase, putative; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), NADH:flavin oxidoreductase/NADH oxidase, N-terminal (InterPro:IPR001155); BEST Arabidopsis thaliana protein match is: OPR1; 12-oxophytodienoate reductase (TAIR:AT1G76680.1); Has 8168 Blast hits to 8147 proteins in 1106 species: Archae - 62; Bacteria - 5423; Metazoa - 29; Fungi - 540; Plants - 296; Viruses - 0; Other Eukaryotes - 1818 (source: NCBI BLink).  protein_id AT1G09400.1p  transcript_id AT1G09400.1  protein_id AT1G09400.1p  transcript_id AT1G09400.1  
At1g09410	chr1:003035443	0.0	W/3035443-3037560	AT1G09410.1  CDS  gene_syn F14J9.7, F14J9_7  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G56690.1); Has 17368 Blast hits to 5186 proteins in 148 species: Archae - 0; Bacteria - 8; Metazoa - 27; Fungi - 27; Plants - 17053; Viruses - 0; Other Eukaryotes - 253 (source: NCBI BLink).  protein_id AT1G09410.1p  transcript_id AT1G09410.1  protein_id AT1G09410.1p  transcript_id AT1G09410.1  
At1g09415	chr1:003037910	0.0	C/3037910-3038248	AT1G09415.1  CDS  gene_syn NIM1-INTERACTING 3, NIMIN-3  gene NIMIN-3  function encodes a kinase that physically interacts with NPR1/NIM1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NIMIN-3 (NIM1-INTERACTING 3)  note NIM1-INTERACTING 3 (NIMIN-3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 10; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G09415.1p  transcript_id AT1G09415.1  protein_id AT1G09415.1p  transcript_id AT1G09415.1  
At1g09421	chr1:003038631	0.0	W/3038631-3039326	AT1G09421.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G09420  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G09421.1  
At1g09420	chr1:003041614	0.0	C/3041614-3041715,3041175-3041379,3040841-3041088,3040649-3040743,3040450-3040564,3040113-3040318,3039924-3040032,3039790-3039824,3039550-3039670,3039247-3039449,3038971-3039171,3038640-3038877	AT1G09420.1  CDS  gene_syn F14J9.8, F14J9_8, G6PD4, GLUCOSE-6-PHOSPHATE DEHYDROGENASE 4  gene G6PD4  function Encodes a protein similar to glucose-6-phosphate dehydrogenase but, based on amino acid differences in the active site and lack of activity, does not encode a functional G6PDH. The amino acid sequence for the consensus sequence of the G6PDH active site (DHYLGKE) differs in three places in this protein. gc exon splice site at 20574 is based on protein alignment, and is not confirmed experimentally.  go_process glucose metabolic process|GO:0006006||IEA  go_process metabolic process|GO:0008152||IEA  go_component chloroplast|GO:0009507|15634201|ISS  go_process glucose metabolic process|GO:0006006||ISS  go_function glucose-6-phosphate dehydrogenase activity|GO:0004345|15634201|IDA  go_function glucose-6-phosphate dehydrogenase activity|GO:0004345||ISS  product G6PD4 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 4); glucose-6-phosphate dehydrogenase  note GLUCOSE-6-PHOSPHATE DEHYDROGENASE 4 (G6PD4); FUNCTIONS IN: glucose-6-phosphate dehydrogenase activity; INVOLVED IN: glucose metabolic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose-6-phosphate dehydrogenase (InterPro:IPR001282); BEST Arabidopsis thaliana protein match is: G6PD2 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 2); glucose-6-phosphate dehydrogenase (TAIR:AT5G13110.1); Has 5329 Blast hits to 5311 proteins in 1267 species: Archae - 0; Bacteria - 3170; Metazoa - 644; Fungi - 121; Plants - 280; Viruses - 2; Other Eukaryotes - 1112 (source: NCBI BLink).  protein_id AT1G09420.1p  transcript_id AT1G09420.1  protein_id AT1G09420.1p  transcript_id AT1G09420.1  
At1g09430	chr1:003042135	0.0	W/3042135-3042233,3042490-3042666,3042743-3042904,3043016-3043096,3043367-3043418,3043516-3043630,3043722-3043803,3043923-3044018,3044218-3044319,3044412-3044528,3044648-3044764,3044904-3044978	AT1G09430.1  CDS  gene_syn ACLA-3, ATP-CITRATE LYASE A-3, F14J9.9, F14J9_9  gene ACLA-3  function Encodes subunit A of the heteromeric enzyme ATP citrate lyase (ACL). In animals, ACL is encoded by a single gene; ACL in Arabidopsis is composed of two polypeptides, ACLA (encoded by 3 genes) and ACLB (encoded by 2 genes). The holoenzyme has an A(4)B(4)stoichiometry. Expression of both ACLA and ACLB but not of either of the subunits alone results in ACL activity.  go_component citrate lyase complex|GO:0009346|12376641|ISS  go_process acetyl-CoA biosynthetic process|GO:0006085|12376641|TAS  go_function ATP citrate synthase activity|GO:0003878|12376641|ISS  product ACLA-3; ATP citrate synthase  note ACLA-3; FUNCTIONS IN: ATP citrate synthase activity; INVOLVED IN: acetyl-CoA biosynthetic process; LOCATED IN: citrate lyase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATP-grasp fold, subdomain 2 (InterPro:IPR013816), ATP-grasp fold, succinyl-CoA synthetase-type (InterPro:IPR013650), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: ACLA-1; ATP citrate synthase (TAIR:AT1G10670.2); Has 3908 Blast hits to 3907 proteins in 1019 species: Archae - 87; Bacteria - 2012; Metazoa - 210; Fungi - 94; Plants - 52; Viruses - 0; Other Eukaryotes - 1453 (source: NCBI BLink).  protein_id AT1G09430.1p  transcript_id AT1G09430.1  protein_id AT1G09430.1p  transcript_id AT1G09430.1  
At1g09440	chr1:003046822	0.0	C/3046822-3047393,3046634-3046738,3046436-3046558,3046185-3046355,3045972-3046101,3045684-3045896,3045513-3045599	AT1G09440.1  CDS  gene_syn F14J9.10, F14J9_10  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G56720.3); Has 86347 Blast hits to 85305 proteins in 3127 species: Archae - 56; Bacteria - 8006; Metazoa - 37797; Fungi - 6649; Plants - 18732; Viruses - 352; Other Eukaryotes - 14755 (source: NCBI BLink).  protein_id AT1G09440.1p  transcript_id AT1G09440.1  protein_id AT1G09440.1p  transcript_id AT1G09440.1  
At1g09450	chr1:003049066	0.0	W/3049066-3049078,3049170-3049284,3049384-3049464,3049678-3049765,3049957-3050513,3050692-3050815,3051143-3051252,3051371-3051479,3051582-3051674,3051770-3051831,3051915-3052045,3052149-3052219,3052307-3052359,3052578-3052644,3052733-3052858	AT1G09450.1  CDS  gene_syn F14J9.11, F14J9_11  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  product haspin-related  note haspin-related; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719); Has 225 Blast hits to 225 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 71; Plants - 17; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT1G09450.1p  transcript_id AT1G09450.1  protein_id AT1G09450.1p  transcript_id AT1G09450.1  
At1g09460	chr1:003053901	0.0	W/3053901-3054534,3054637-3054784,3054880-3055090	AT1G09460.1  CDS  gene_syn F14J9.12, F14J9_12  go_component endomembrane system|GO:0012505||IEA  product glucan endo-1,3-beta-glucosidase-related  note glucan endo-1,3-beta-glucosidase-related; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30933.1); Has 25343 Blast hits to 12380 proteins in 832 species: Archae - 259; Bacteria - 4336; Metazoa - 7865; Fungi - 2354; Plants - 5001; Viruses - 1164; Other Eukaryotes - 4364 (source: NCBI BLink).  protein_id AT1G09460.1p  transcript_id AT1G09460.1  protein_id AT1G09460.1p  transcript_id AT1G09460.1  
At1g09470	chr1:003056761	0.0	C/3056761-3056931,3056552-3056659,3055824-3056285,3055636-3055737,3055391-3055558	AT1G09470.1  CDS  gene_syn F14J9.13, F14J9_13  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26770.2); Has 44465 Blast hits to 23544 proteins in 1323 species: Archae - 474; Bacteria - 3788; Metazoa - 25253; Fungi - 3384; Plants - 1422; Viruses - 103; Other Eukaryotes - 10041 (source: NCBI BLink).  protein_id AT1G09470.1p  transcript_id AT1G09470.1  protein_id AT1G09470.1p  transcript_id AT1G09470.1  
At1g09480	chr1:003057975	0.0	W/3057975-3058092,3058513-3058653,3059300-3059469,3059807-3059998,3060082-3060431,3060523-3060661	AT1G09480.1  CDS  gene_syn F14J9.14, F14J9_14  function similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_component cellular_component|GO:0005575||ND  go_process lignin biosynthetic process|GO:0009809||ISS  go_function alcohol dehydrogenase activity|GO:0004022|14745009|ISS  go_function cinnamyl-alcohol dehydrogenase activity|GO:0045551||ISS  product cinnamyl-alcohol dehydrogenase family / CAD family  note cinnamyl-alcohol dehydrogenase family / CAD family; FUNCTIONS IN: alcohol dehydrogenase activity, cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamyl-alcohol dehydrogenase family / CAD family (TAIR:AT1G09490.1); Has 7792 Blast hits to 7766 proteins in 1131 species: Archae - 112; Bacteria - 2788; Metazoa - 452; Fungi - 589; Plants - 1448; Viruses - 47; Other Eukaryotes - 2356 (source: NCBI BLink).  protein_id AT1G09480.1p  transcript_id AT1G09480.1  protein_id AT1G09480.1p  transcript_id AT1G09480.1  
At1g09483	chr1:003061685	0.0	C/3061685-3061729,3061500-3061601,3061307-3061418,3060992-3061071	AT1G09483.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09470.1); Has 26 Blast hits to 26 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G09483.1p  transcript_id AT1G09483.1  protein_id AT1G09483.1p  transcript_id AT1G09483.1  
At1g09486	chr1:003062430	0.0	C/3062430-3063731	AT1G09486.1  pseudogenic_transcript  pseudo  note pseudogene, 60S ribosomal protein L21 (RPL21B), temporary automated functional assignment; blastp match of 67% identity and 2.0e-52 P-value to GP|3885884|gb|AAC78102.1||AF093630 60S ribosomal protein L21 {Oryza sativa}  
At1g09490	chr1:003064172	0.0	W/3064172-3064289,3064705-3064874,3064956-3065147,3065226-3065575,3065677-3065815	AT1G09490.1  CDS  gene_syn F14J9.15, F14J9_15  function similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase; Location of EST gb:H37170, gb:H77227 and gb:AA605565  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_process lignin biosynthetic process|GO:0009809||ISS  go_function alcohol dehydrogenase activity|GO:0004022|14745009|ISS  go_function cinnamyl-alcohol dehydrogenase activity|GO:0045551||ISS  product cinnamyl-alcohol dehydrogenase family / CAD family  note cinnamyl-alcohol dehydrogenase family / CAD family; FUNCTIONS IN: alcohol dehydrogenase activity, cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamyl-alcohol dehydrogenase family / CAD family (TAIR:AT1G09480.1); Has 7170 Blast hits to 7158 proteins in 1068 species: Archae - 102; Bacteria - 2450; Metazoa - 367; Fungi - 567; Plants - 1390; Viruses - 12; Other Eukaryotes - 2282 (source: NCBI BLink).  protein_id AT1G09490.1p  transcript_id AT1G09490.1  protein_id AT1G09490.1p  transcript_id AT1G09490.1  
At1g09490	chr1:003064680	0.0	W/3064680-3064874,3064956-3065147,3065226-3065575,3065677-3065815	AT1G09490.2  CDS  gene_syn F14J9.15, F14J9_15  function similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase; Location of EST gb:H37170, gb:H77227 and gb:AA605565  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_process lignin biosynthetic process|GO:0009809||ISS  go_function alcohol dehydrogenase activity|GO:0004022|14745009|ISS  go_function cinnamyl-alcohol dehydrogenase activity|GO:0045551||ISS  product cinnamyl-alcohol dehydrogenase family / CAD family  note cinnamyl-alcohol dehydrogenase family / CAD family; FUNCTIONS IN: alcohol dehydrogenase activity, cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamyl-alcohol dehydrogenase family / CAD family (TAIR:AT1G09480.1); Has 4400 Blast hits to 4390 proteins in 724 species: Archae - 37; Bacteria - 1017; Metazoa - 157; Fungi - 517; Plants - 1355; Viruses - 0; Other Eukaryotes - 1317 (source: NCBI BLink).  protein_id AT1G09490.2p  transcript_id AT1G09490.2  protein_id AT1G09490.2p  transcript_id AT1G09490.2  
At1g09500	chr1:003066811	0.0	W/3066811-3066928,3067341-3067513,3067617-3067808,3067891-3068240,3068340-3068484	AT1G09500.1  CDS  gene_syn F14J9.16, F14J9_16  function similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_process lignin biosynthetic process|GO:0009809||ISS  go_function alcohol dehydrogenase activity|GO:0004022|14745009|ISS  go_function cinnamyl-alcohol dehydrogenase activity|GO:0045551||ISS  product cinnamyl-alcohol dehydrogenase family / CAD family  note cinnamyl-alcohol dehydrogenase family / CAD family; FUNCTIONS IN: alcohol dehydrogenase activity, cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamyl-alcohol dehydrogenase family / CAD family (TAIR:AT1G09510.1); Has 6665 Blast hits to 6653 proteins in 1044 species: Archae - 94; Bacteria - 2120; Metazoa - 315; Fungi - 560; Plants - 1399; Viruses - 45; Other Eukaryotes - 2132 (source: NCBI BLink).  protein_id AT1G09500.1p  transcript_id AT1G09500.1  protein_id AT1G09500.1p  transcript_id AT1G09500.1  
At1g09500	chr1:003066811	0.0	W/3066811-3066928,3067341-3067513,3067617-3067808,3067891-3068244	AT1G09500.3  CDS  gene_syn F14J9.16, F14J9_16  function similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_process lignin biosynthetic process|GO:0009809||ISS  go_function alcohol dehydrogenase activity|GO:0004022|14745009|ISS  go_function cinnamyl-alcohol dehydrogenase activity|GO:0045551||ISS  product cinnamyl-alcohol dehydrogenase family / CAD family  note cinnamyl-alcohol dehydrogenase family / CAD family; FUNCTIONS IN: alcohol dehydrogenase activity, cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamyl-alcohol dehydrogenase family / CAD family (TAIR:AT1G09510.1); Has 6620 Blast hits to 6608 proteins in 1043 species: Archae - 90; Bacteria - 2098; Metazoa - 315; Fungi - 558; Plants - 1394; Viruses - 45; Other Eukaryotes - 2120 (source: NCBI BLink).  protein_id AT1G09500.3p  transcript_id AT1G09500.3  protein_id AT1G09500.3p  transcript_id AT1G09500.3  
At1g09500	chr1:003067325	0.0	W/3067325-3067513,3067617-3067808,3067891-3068240,3068340-3068484	AT1G09500.2  CDS  gene_syn F14J9.16, F14J9_16  function similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_process lignin biosynthetic process|GO:0009809||ISS  go_function alcohol dehydrogenase activity|GO:0004022|14745009|ISS  go_function cinnamyl-alcohol dehydrogenase activity|GO:0045551||ISS  product cinnamyl-alcohol dehydrogenase family / CAD family  note cinnamyl-alcohol dehydrogenase family / CAD family; FUNCTIONS IN: alcohol dehydrogenase activity, cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamyl-alcohol dehydrogenase family / CAD family (TAIR:AT1G09510.1); Has 4102 Blast hits to 4092 proteins in 687 species: Archae - 34; Bacteria - 864; Metazoa - 94; Fungi - 506; Plants - 1340; Viruses - 4; Other Eukaryotes - 1260 (source: NCBI BLink).  protein_id AT1G09500.2p  transcript_id AT1G09500.2  protein_id AT1G09500.2p  transcript_id AT1G09500.2  
At1g09510	chr1:003069396	0.0	W/3069396-3069513,3069629-3069798,3069953-3070144,3070230-3070579,3070674-3070812	AT1G09510.1  CDS  gene_syn F14J9.17, F14J9_17  function similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_component cellular_component|GO:0005575||ND  go_process lignin biosynthetic process|GO:0009809||ISS  go_function alcohol dehydrogenase activity|GO:0004022|14745009|ISS  go_function cinnamyl-alcohol dehydrogenase activity|GO:0045551||ISS  product cinnamyl-alcohol dehydrogenase family / CAD family  note cinnamyl-alcohol dehydrogenase family / CAD family; FUNCTIONS IN: alcohol dehydrogenase activity, cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, F mature embryo stage, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamyl-alcohol dehydrogenase family / CAD family (TAIR:AT1G09500.1); Has 7815 Blast hits to 7800 proteins in 1148 species: Archae - 134; Bacteria - 2838; Metazoa - 326; Fungi - 579; Plants - 1423; Viruses - 51; Other Eukaryotes - 2464 (source: NCBI BLink).  protein_id AT1G09510.1p  transcript_id AT1G09510.1  protein_id AT1G09510.1p  transcript_id AT1G09510.1  
At1g09520	chr1:003071248	0.0	C/3071248-3072030	AT1G09520.1  CDS  gene_syn F14J9.18, F14J9_18  go_component chloroplast|GO:0009507||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT3G17460.1); Has 29 Blast hits to 29 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 23; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G09520.1p  transcript_id AT1G09520.1  protein_id AT1G09520.1p  transcript_id AT1G09520.1  
At1g09530	chr1:003077216	0.0	W/3077216-3077286,3077378-3078257,3078346-3078453,3078545-3078610,3078843-3078908,3078984-3079367	AT1G09530.1  CDS  gene_syn F14J9.19, F14J9_19, PAP3, PHOTOCURRENT 1, PHYTOCHROME INTERACTING FACTOR 3, PHYTOCHROME-ASSOCIATED PROTEIN 3, PIF3, POC1, PURPLE ACID PHOSPHATASE 3  gene PIF3  function Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY, CCA1. Acts as a negative regulator of phyB signalling. It degrades rapidly after irradiation of dark grown seedlings in a process controlled by phytochromes. Does not play a significant role in controlling light input and function of the circadian clockwork. Binds to G- and E-boxes, but not to other ACEs. Binds to anthocyanin biosynthetic genes in a light- and HY5-independent fashion. PIF3 function as a transcriptional activator can be functionally and mechanistically separated from its role in repression of PhyB mediated processes.  go_component nucleus|GO:0005634|9845368|IDA  go_process signal transduction|GO:0007165|9845368|TAS  go_process circadian rhythm|GO:0007623|16055924|IMP  go_process response to red or far red light|GO:0009639|10318970|IMP  go_process de-etiolation|GO:0009704|18252845|IMP  go_process gibberellic acid mediated signaling|GO:0009740|18053005|IMP  go_process red or far red light signaling pathway|GO:0010017|10318970|IMP  go_process positive regulation of anthocyanin metabolic process|GO:0031539|17319847|IMP  go_function DNA binding|GO:0003677|17319847|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function protein binding|GO:0005515|12826627|IPI  go_function transcription regulator activity|GO:0030528|12897250|TAS  go_function transcription regulator activity|GO:0030528|9845368|ISS  go_function transcription regulator activity|GO:0030528|9845368|TAS  product PIF3 (PHYTOCHROME INTERACTING FACTOR 3); DNA binding / protein binding / transcription factor/ transcription regulator  note PHYTOCHROME INTERACTING FACTOR 3 (PIF3); FUNCTIONS IN: protein binding, transcription factor activity, transcription regulator activity, DNA binding; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6); DNA binding / transcription factor (TAIR:AT3G59060.4); Has 2694 Blast hits to 2688 proteins in 260 species: Archae - 0; Bacteria - 0; Metazoa - 669; Fungi - 114; Plants - 1887; Viruses - 7; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G09530.1p  transcript_id AT1G09530.1  protein_id AT1G09530.1p  transcript_id AT1G09530.1  
At1g09530	chr1:003077216	0.0	W/3077216-3077286,3077378-3078257,3078346-3078453,3078545-3078610,3078843-3078908,3078984-3079367	AT1G09530.2  CDS  gene_syn F14J9.19, F14J9_19, PAP3, PHOTOCURRENT 1, PHYTOCHROME INTERACTING FACTOR 3, PHYTOCHROME-ASSOCIATED PROTEIN 3, PIF3, POC1, PURPLE ACID PHOSPHATASE 3  gene PIF3  function Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY, CCA1. Acts as a negative regulator of phyB signalling. It degrades rapidly after irradiation of dark grown seedlings in a process controlled by phytochromes. Does not play a significant role in controlling light input and function of the circadian clockwork. Binds to G- and E-boxes, but not to other ACEs. Binds to anthocyanin biosynthetic genes in a light- and HY5-independent fashion. PIF3 function as a transcriptional activator can be functionally and mechanistically separated from its role in repression of PhyB mediated processes.  go_component nucleus|GO:0005634|9845368|IDA  go_process signal transduction|GO:0007165|9845368|TAS  go_process circadian rhythm|GO:0007623|16055924|IMP  go_process response to red or far red light|GO:0009639|10318970|IMP  go_process de-etiolation|GO:0009704|18252845|IMP  go_process gibberellic acid mediated signaling|GO:0009740|18053005|IMP  go_process red or far red light signaling pathway|GO:0010017|10318970|IMP  go_process positive regulation of anthocyanin metabolic process|GO:0031539|17319847|IMP  go_function DNA binding|GO:0003677|17319847|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function protein binding|GO:0005515|12826627|IPI  go_function transcription regulator activity|GO:0030528|12897250|TAS  go_function transcription regulator activity|GO:0030528|9845368|ISS  go_function transcription regulator activity|GO:0030528|9845368|TAS  product PIF3 (PHYTOCHROME INTERACTING FACTOR 3); DNA binding / protein binding / transcription factor/ transcription regulator  note PHYTOCHROME INTERACTING FACTOR 3 (PIF3); FUNCTIONS IN: protein binding, transcription factor activity, transcription regulator activity, DNA binding; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6); DNA binding / transcription factor (TAIR:AT3G59060.4); Has 2694 Blast hits to 2688 proteins in 260 species: Archae - 0; Bacteria - 0; Metazoa - 669; Fungi - 114; Plants - 1887; Viruses - 7; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G09530.2p  transcript_id AT1G09530.2  protein_id AT1G09530.2p  transcript_id AT1G09530.2  
At1g09540	chr1:003086333	0.0	W/3086333-3086465,3086546-3086675,3086852-3087689	AT1G09540.1  CDS  gene_syn ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, ATMYB61, F14J9.20, F14J9_20, MYB DOMAIN PROTEIN 61, MYB61  gene MYB61  function Encodes putative transcription factor. Mutants lack of mucilage extrusion from the seeds during imbibition. Reduced quantities of mucilage are deposited during the development of the seed coat epidermis in myb61 mutants. Expressed in guard cells,loss of function mutations show an increase in stomatal pore opening suggesting a role in ABA independent regulation of stomatal pore size.  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process regulation of stomatal movement|GO:0010119|16005292|IMP  go_process seed coat development|GO:0010214|11752387|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB61 (MYB DOMAIN PROTEIN 61); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 61 (MYB61); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: seed coat development, response to auxin stimulus, regulation of stomatal movement, regulation of transcription, DNA-dependent; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: AtMYB50 (myb domain protein 50); DNA binding / transcription factor (TAIR:AT1G57560.1); Has 6379 Blast hits to 5879 proteins in 352 species: Archae - 0; Bacteria - 0; Metazoa - 662; Fungi - 313; Plants - 3774; Viruses - 4; Other Eukaryotes - 1626 (source: NCBI BLink).  protein_id AT1G09540.1p  transcript_id AT1G09540.1  protein_id AT1G09540.1p  transcript_id AT1G09540.1  
At1g09550	chr1:003092089	0.0	C/3092089-3092254,3091805-3091887,3091575-3091704,3091401-3091474,3091224-3091310,3090994-3091118,3090847-3090907,3090707-3090760,3090545-3090622,3090354-3090456,3089883-3090028,3089733-3089792	AT1G09550.1  CDS  gene_syn F14J9.21, F14J9_21  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function carboxylesterase activity|GO:0004091||ISS  product pectinacetylesterase, putative  note pectinacetylesterase, putative; FUNCTIONS IN: carboxylesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinacetylesterase (InterPro:IPR004963); BEST Arabidopsis thaliana protein match is: carboxylesterase (TAIR:AT1G57590.1); Has 369 Blast hits to 365 proteins in 73 species: Archae - 0; Bacteria - 26; Metazoa - 110; Fungi - 0; Plants - 155; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT1G09550.1p  transcript_id AT1G09550.1  protein_id AT1G09550.1p  transcript_id AT1G09550.1  
At1g09560	chr1:003093896	0.0	W/3093896-3094010,3094095-3094639	AT1G09560.1  CDS  gene_syn F14J9.22, F14J9_22, GERMIN-LIKE PROTEIN 5, GLP5  gene GLP5  function germin-like protein (GLP5)  go_component cell wall|GO:0005618|14595688|IDA  go_component nucleus|GO:0005634|14617066|IDA  go_function manganese ion binding|GO:0030145||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process response to cold|GO:0009409|14617066|IEP  product GLP5 (GERMIN-LIKE PROTEIN 5); manganese ion binding / nutrient reservoir  note GERMIN-LIKE PROTEIN 5 (GLP5); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: response to cold; LOCATED IN: cell wall, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: GLP10 (GERMIN-LIKE PROTEIN 10); manganese ion binding / nutrient reservoir (TAIR:AT3G62020.1); Has 1025 Blast hits to 1024 proteins in 154 species: Archae - 0; Bacteria - 147; Metazoa - 0; Fungi - 47; Plants - 815; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G09560.1p  transcript_id AT1G09560.1  protein_id AT1G09560.1p  transcript_id AT1G09560.1  
At1g09570	chr1:003097158	0.0	C/3097158-3098892,3096143-3096959,3095782-3096072,3095498-3095699	AT1G09570.2  CDS  gene_syn ELONGATED HYPOCOTYL 8, F14J9.23, F14J9_23, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, FHY2, FRE1, HY8, PHYA, PHYTOCHROME A  gene PHYA  function Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation.  go_component nucleus|GO:0005634|12119377|IDA  go_component cytoplasm|GO:0005737|12119377|IDA  go_component nuclear body|GO:0016604|16332538|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process gravitropism|GO:0009630|15695459|IMP  go_process phototropism|GO:0009638|14686433|IMP  go_process red light signaling pathway|GO:0010161|17076805|IMP  go_process response to continuous far red light stimulus by the high-irradiance response system|GO:0010201|9351250|IMP  go_process response to very low fluence red light stimulus|GO:0010203|9351250|IMP  go_process response to far red light|GO:0010218|15665470|ISS  go_process response to arsenic|GO:0046685|17335514|IMP  go_function protein histidine kinase activity|GO:0004673||ISS  go_function signal transducer activity|GO:0004871||ISS  go_function G-protein coupled photoreceptor activity|GO:0008020||ISS  go_function red or far-red light photoreceptor activity|GO:0009883|8400877|TAS  product PHYA (PHYTOCHROME A); G-protein coupled photoreceptor/ protein histidine kinase/ red or far-red light photoreceptor/ signal transducer  note PHYTOCHROME A (PHYA); FUNCTIONS IN: red or far-red light photoreceptor activity, protein histidine kinase activity, G-protein coupled photoreceptor activity, signal transducer activity; INVOLVED IN: in 8 processes; LOCATED IN: nuclear body, nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATP-binding region, ATPase-like (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome (InterPro:IPR001294), Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region (InterPro:IPR003661), Phytochrome chromophore binding site (InterPro:IPR013516), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: PHYC (phytochrome defective c); protein histidine kinase (TAIR:AT5G35840.1); Has 18887 Blast hits to 18627 proteins in 2408 species: Archae - 239; Bacteria - 14190; Metazoa - 2; Fungi - 420; Plants - 2982; Viruses - 7; Other Eukaryotes - 1047 (source: NCBI BLink).  protein_id AT1G09570.2p  transcript_id AT1G09570.2  protein_id AT1G09570.2p  transcript_id AT1G09570.2  
At1g09570	chr1:003097158	0.0	C/3097158-3099216,3096143-3096959,3095782-3096072,3095498-3095699	AT1G09570.1  CDS  gene_syn ELONGATED HYPOCOTYL 8, F14J9.23, F14J9_23, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, FHY2, FRE1, HY8, PHYA, PHYTOCHROME A  gene PHYA  function Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation.  go_component nucleus|GO:0005634|12119377|IDA  go_component cytoplasm|GO:0005737|12119377|IDA  go_component nuclear body|GO:0016604|16332538|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process gravitropism|GO:0009630|15695459|IMP  go_process phototropism|GO:0009638|14686433|IMP  go_process red light signaling pathway|GO:0010161|17076805|IMP  go_process response to continuous far red light stimulus by the high-irradiance response system|GO:0010201|9351250|IMP  go_process response to very low fluence red light stimulus|GO:0010203|9351250|IMP  go_process response to far red light|GO:0010218|15665470|ISS  go_process response to arsenic|GO:0046685|17335514|IMP  go_function protein histidine kinase activity|GO:0004673||ISS  go_function signal transducer activity|GO:0004871||ISS  go_function G-protein coupled photoreceptor activity|GO:0008020||ISS  go_function red or far-red light photoreceptor activity|GO:0009883|8400877|TAS  product PHYA (PHYTOCHROME A); G-protein coupled photoreceptor/ protein histidine kinase/ red or far-red light photoreceptor/ signal transducer  note PHYTOCHROME A (PHYA); FUNCTIONS IN: red or far-red light photoreceptor activity, protein histidine kinase activity, G-protein coupled photoreceptor activity, signal transducer activity; INVOLVED IN: in 8 processes; LOCATED IN: nuclear body, nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATP-binding region, ATPase-like (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome A/B/C/D/E (InterPro:IPR012129), Phytochrome (InterPro:IPR001294), Phytochrome chromophore binding site (InterPro:IPR013516), Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region (InterPro:IPR003661), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: PHYC (phytochrome defective c); protein histidine kinase (TAIR:AT5G35840.1); Has 18829 Blast hits to 18523 proteins in 2407 species: Archae - 241; Bacteria - 14112; Metazoa - 2; Fungi - 420; Plants - 3004; Viruses - 7; Other Eukaryotes - 1043 (source: NCBI BLink).  protein_id AT1G09570.1p  transcript_id AT1G09570.1  protein_id AT1G09570.1p  transcript_id AT1G09570.1  
At1g09575	chr1:003102452	0.0	C/3102452-3102832,3101851-3102348	AT1G09575.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF607 (InterPro:IPR006769); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G57610.2); Has 282 Blast hits to 280 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 41; Plants - 69; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT1G09575.1p  transcript_id AT1G09575.1  protein_id AT1G09575.1p  transcript_id AT1G09575.1  
At1g09580	chr1:003104657	0.0	W/3104657-3104875,3105485-3105697,3105797-3105873,3105948-3106092	AT1G09580.1  CDS  gene_syn F14J9.28, F14J9_28  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_process intracellular protein transport|GO:0006886||ISS  go_function protein transmembrane transporter activity|GO:0008320||ISS  product emp24/gp25L/p24 family protein  note emp24/gp25L/p24 family protein; FUNCTIONS IN: protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: endomembrane system, integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family protein (TAIR:AT1G57620.1); Has 1298 Blast hits to 1296 proteins in 175 species: Archae - 0; Bacteria - 0; Metazoa - 666; Fungi - 335; Plants - 132; Viruses - 0; Other Eukaryotes - 165 (source: NCBI BLink).  protein_id AT1G09580.1p  transcript_id AT1G09580.1  protein_id AT1G09580.1p  transcript_id AT1G09580.1  
At1g09590	chr1:003106549	0.0	W/3106549-3106785,3107349-3107606	AT1G09590.1  CDS  gene_syn F14J9.25  go_component nucleolus|GO:0005730|15496452|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L21 (RPL21A)  note 60S ribosomal protein L21 (RPL21A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, nucleolus, chloroplast; EXPRESSED IN: guard cell, juvenile leaf; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Ribosomal protein L21e (InterPro:IPR001147), Ribosomal protein L21e, conserved site (InterPro:IPR018259); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L21 (RPL21C) (TAIR:AT1G09690.1); Has 1146 Blast hits to 1146 proteins in 281 species: Archae - 143; Bacteria - 0; Metazoa - 615; Fungi - 122; Plants - 82; Viruses - 0; Other Eukaryotes - 184 (source: NCBI BLink).  protein_id AT1G09590.1p  transcript_id AT1G09590.1  protein_id AT1G09590.1p  transcript_id AT1G09590.1  
At1g09600	chr1:003108617	0.0	W/3108617-3109120,3109210-3109494,3109571-3110116,3110231-3110331,3110428-3110533,3110625-3111035,3111127-3111318	AT1G09600.1  CDS  gene_syn F14J9.26, F14J9_26  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G57700.1); Has 90288 Blast hits to 89115 proteins in 3039 species: Archae - 48; Bacteria - 7693; Metazoa - 39299; Fungi - 8328; Plants - 17660; Viruses - 428; Other Eukaryotes - 16832 (source: NCBI BLink).  protein_id AT1G09600.1p  transcript_id AT1G09600.1  protein_id AT1G09600.1p  transcript_id AT1G09600.1  
At1g09610	chr1:003111789	0.0	W/3111789-3112637	AT1G09610.1  CDS  gene_syn F14J9.29, F14J9_29  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579, plant (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09990.1); Has 160 Blast hits to 160 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G09610.1p  transcript_id AT1G09610.1  protein_id AT1G09610.1p  transcript_id AT1G09610.1  
At1g09620	chr1:003113205	0.0	C/3113205-3116455,3113077-3113101	AT1G09620.1  CDS  gene_syn F21M12.1, F21M12_1  go_component chloroplast|GO:0009507|18431481|IDA  go_process translation|GO:0006412||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_process leucyl-tRNA aminoacylation|GO:0006429||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function leucine-tRNA ligase activity|GO:0004823||IEA  go_function ATP binding|GO:0005524||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||ISS  go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS  go_function ATP binding|GO:0005524||ISS  product ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding  note ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding; FUNCTIONS IN: nucleotide binding, aminoacyl-tRNA ligase activity, leucine-tRNA ligase activity, ATP binding; INVOLVED IN: leucyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Leucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolic (InterPro:IPR004493), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080); BEST Arabidopsis thaliana protein match is: EMB2369 (EMBRYO DEFECTIVE 2369); ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding (TAIR:AT4G04350.1); Has 10914 Blast hits to 10382 proteins in 1644 species: Archae - 486; Bacteria - 5815; Metazoa - 490; Fungi - 313; Plants - 129; Viruses - 0; Other Eukaryotes - 3681 (source: NCBI BLink).  protein_id AT1G09620.1p  transcript_id AT1G09620.1  protein_id AT1G09620.1p  transcript_id AT1G09620.1  
At1g09625	chr1:003117343	0.0	C/3117343-3117567	AT1G09625.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G09625.1p  transcript_id AT1G09625.1  protein_id AT1G09625.1p  transcript_id AT1G09625.1  
At1g09630	chr1:003119407	0.0	C/3119407-3119571,3118350-3118838	AT1G09630.1  CDS  gene_syn ARABIDOPSIS RAB GTPASE 11C, ARABIDOPSIS RAB GTPASE A2A, ATRAB-A2A, ATRAB11C, ATRABA2A, F21M12.2, F21M12_2, RAB GTPASE A2A, RAB-A2A, RAS-RELATED SMALL GTPASE  gene ATRAB11C  function Encodes a putative GTP-binding protein. Associates with organelles on a pathway from the Golgi to the plasma membrane in interphase. In dividing cells acts at the cell plate.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function GTP binding|GO:0005525||IEA  go_component endosome|GO:0005768|18239134|IDA  go_component cell plate|GO:0009504|18239134|IDA  go_process cytokinesis|GO:0000910|18239134|IMP  go_function GTP binding|GO:0005525||ISS  product ATRAB11C (ARABIDOPSIS RAB GTPASE 11C); GTP binding  note ARABIDOPSIS RAB GTPASE 11C (ATRAB11C); FUNCTIONS IN: GTP binding; INVOLVED IN: cytokinesis; LOCATED IN: endosome, plasma membrane, cell plate; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B); GTP binding / GTPase/ protein binding (TAIR:AT1G07410.1); Has 22111 Blast hits to 22069 proteins in 618 species: Archae - 17; Bacteria - 104; Metazoa - 12465; Fungi - 2563; Plants - 1891; Viruses - 19; Other Eukaryotes - 5052 (source: NCBI BLink).  protein_id AT1G09630.1p  transcript_id AT1G09630.1  protein_id AT1G09630.1p  transcript_id AT1G09630.1  
At1g09640	chr1:003120162	0.0	W/3120162-3120170,3120388-3120537,3120626-3120686,3120787-3120839,3120959-3121060,3121171-3121660,3121773-3122152	AT1G09640.1  CDS  gene_syn F21M12.3, F21M12_3  go_component plasma membrane|GO:0005886|17317660|IDA  go_process translational elongation|GO:0006414||IEA  go_function translation elongation factor activity|GO:0003746||IEA  go_function translation elongation factor activity|GO:0003746||ISS  product elongation factor 1B-gamma, putative / eEF-1B gamma, putative  note elongation factor 1B-gamma, putative / eEF-1B gamma, putative; FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, cultured cell, pollen tube, leaf, seed; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Translation elongation factor EF1B, gamma chain, conserved (InterPro:IPR001662), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: elongation factor 1B-gamma, putative / eEF-1B gamma, putative (TAIR:AT1G57720.2); Has 6774 Blast hits to 6759 proteins in 920 species: Archae - 2; Bacteria - 2995; Metazoa - 1594; Fungi - 400; Plants - 499; Viruses - 0; Other Eukaryotes - 1284 (source: NCBI BLink).  protein_id AT1G09640.1p  transcript_id AT1G09640.1  protein_id AT1G09640.1p  transcript_id AT1G09640.1  
At1g09645	chr1:003123155	0.0	W/3123155-3123236,3124109-3124347	AT1G09645.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G57765.1); Has 31 Blast hits to 31 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G09645.1p  transcript_id AT1G09645.1  protein_id AT1G09645.1p  transcript_id AT1G09645.1  
At1g09650	chr1:003125978	0.0	W/3125978-3127126	AT1G09650.1  CDS  gene_syn F21M12.4, F21M12_4  go_component cellular_component|GO:0005575||ND  go_process response to chitin|GO:0010200|17722694|IEP  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to chitin; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein-related (TAIR:AT1G12490.1); Has 611 Blast hits to 598 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 599; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G09650.1p  transcript_id AT1G09650.1  protein_id AT1G09650.1p  transcript_id AT1G09650.1  
At1g09660	chr1:003130661	0.0	C/3130661-3130791,3130100-3130185,3129304-3129428,3129044-3129181,3128851-3128967,3128205-3128402	AT1G09660.2  CDS  gene_syn F21M12.5, F21M12_5  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product KH domain-containing quaking protein, putative  note KH domain-containing quaking protein, putative; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT4G26480.1); Has 1025 Blast hits to 1024 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 707; Fungi - 110; Plants - 146; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT1G09660.2p  transcript_id AT1G09660.2  protein_id AT1G09660.2p  transcript_id AT1G09660.2  
At1g09660	chr1:003130661	0.0	C/3130661-3130791,3130100-3130185,3129304-3129428,3129044-3129181,3128851-3128967,3128259-3128402,3128032-3128187	AT1G09660.1  CDS  gene_syn F21M12.5, F21M12_5  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product KH domain-containing quaking protein, putative  note KH domain-containing quaking protein, putative; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT4G26480.1); Has 1026 Blast hits to 1025 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 712; Fungi - 103; Plants - 149; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT1G09660.1p  transcript_id AT1G09660.1  protein_id AT1G09660.1p  transcript_id AT1G09660.1  
At1g09665	chr1:003133095	0.0	W/3133095-3133555,3133638-3133674	AT1G09665.1  CDS  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_process defense response|GO:0006952||ISS  go_process defense response signaling pathway, resistance gene-dependent|GO:0009870||ISS  product Toll-Interleukin-Resistance (TIR) domain-containing protein  note Toll-Interleukin-Resistance (TIR) domain-containing protein; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: defense response signaling pathway, resistance gene-dependent, signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Toll-Interleukin-Resistance (TIR) domain-containing protein (TAIR:AT1G60320.1); Has 839 Blast hits to 799 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 839; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G09665.1p  transcript_id AT1G09665.1  protein_id AT1G09665.1p  transcript_id AT1G09665.1  
At1g09680	chr1:003134107	0.0	C/3134107-3135930	AT1G09680.1  CDS  gene_syn F21M12.7, F21M12_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: EMB2745 (EMBRYO DEFECTIVE 2745) (TAIR:AT5G39710.1); Has 23956 Blast hits to 6023 proteins in 185 species: Archae - 3; Bacteria - 22; Metazoa - 746; Fungi - 593; Plants - 21530; Viruses - 0; Other Eukaryotes - 1062 (source: NCBI BLink).  protein_id AT1G09680.1p  transcript_id AT1G09680.1  protein_id AT1G09680.1p  transcript_id AT1G09680.1  
At1g09690	chr1:003137194	0.0	C/3137194-3137430,3136407-3136664	AT1G09690.1  CDS  gene_syn F21M12.8, F21M12_8  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L21 (RPL21C)  note 60S ribosomal protein L21 (RPL21C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, ribosome; EXPRESSED IN: juvenile leaf, pollen tube; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Ribosomal protein L21e (InterPro:IPR001147), Ribosomal protein L21e, conserved site (InterPro:IPR018259); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L21 (RPL21A) (TAIR:AT1G09590.1); Has 1146 Blast hits to 1146 proteins in 281 species: Archae - 143; Bacteria - 0; Metazoa - 615; Fungi - 122; Plants - 82; Viruses - 0; Other Eukaryotes - 184 (source: NCBI BLink).  protein_id AT1G09690.1p  transcript_id AT1G09690.1  protein_id AT1G09690.1p  transcript_id AT1G09690.1  
At1g09700	chr1:003140094	0.0	C/3140094-3140118,3139335-3139597,3137960-3138931	AT1G09700.1  CDS  gene_syn DRB1, DSRNA-BINDING PROTEIN 1, F21M12.9, F21M12_9, HYL1, HYPONASTIC LEAVES 1  gene HYL1  function Encodes a nuclear dsRNA binding protein. Involved in mRNA cleavage. The mutant is characterized by shorter stature, delayed flowering, leaf hyponasty, reduced fertility, decreased rate of root growth, and an altered root gravitropic response. It also exhibits less sensitivity to auxin and cytokinin.  go_component nucleus|GO:0005634|11148283|IDA  go_component nucleus|GO:0005634|17369351|IDA  go_component nuclear dicing body|GO:0010445|17442570|IDA  go_component Cajal body|GO:0015030|17369351|IDA  go_process response to auxin stimulus|GO:0009733|11148283|IMP  go_process response to cytokinin stimulus|GO:0009735|11148283|IMP  go_process response to abscisic acid stimulus|GO:0009737|11148283|IMP  go_process RNA interference, production of ta-siRNAs|GO:0010267|16889646|IMP  go_process gene silencing by miRNA, production of miRNAs|GO:0035196|14972688|IMP  go_process gene silencing by miRNA, mRNA cleavage|GO:0035279|15851028|IMP  go_function double-stranded RNA binding|GO:0003725|11148283|IDA  go_function double-stranded RNA binding|GO:0003725|15821876|IDA  go_function protein binding|GO:0005515|15821876|IPI  go_function miRNA binding|GO:0035198|17369351|IDA  product HYL1 (HYPONASTIC LEAVES 1); double-stranded RNA binding / miRNA binding / protein binding  note HYPONASTIC LEAVES 1 (HYL1); FUNCTIONS IN: double-stranded RNA binding, protein binding, miRNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nuclear dicing body, nucleus, Cajal body; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: DRB3 (dsRNA-binding protein 3); RNA binding / double-stranded RNA binding (TAIR:AT3G26932.2); Has 537 Blast hits to 480 proteins in 155 species: Archae - 14; Bacteria - 232; Metazoa - 95; Fungi - 6; Plants - 118; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT1G09700.1p  transcript_id AT1G09700.1  protein_id AT1G09700.1p  transcript_id AT1G09700.1  
At1g09710	chr1:003141119	0.0	W/3141119-3141198,3141294-3141483,3141745-3141831,3142030-3142398,3142930-3143074,3143271-3144232	AT1G09710.1  CDS  gene_syn F21M12.10, F21M12_10  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT1G58220.1); Has 2027 Blast hits to 463 proteins in 129 species: Archae - 0; Bacteria - 71; Metazoa - 332; Fungi - 133; Plants - 41; Viruses - 0; Other Eukaryotes - 1450 (source: NCBI BLink).  protein_id AT1G09710.1p  transcript_id AT1G09710.1  protein_id AT1G09710.1p  transcript_id AT1G09710.1  
At1g09720	chr1:003147210	0.0	C/3147210-3147303,3144438-3147130	AT1G09720.1  CDS  gene_syn F21M12.11, F21M12_11  go_process biological_process|GO:0008150||ND  product kinase interacting family protein  note kinase interacting family protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: pollen tube, leaf; EXPRESSED DURING: 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: KIP1-like (InterPro:IPR011684); BEST Arabidopsis thaliana protein match is: EMB1674 (EMBRYO DEFECTIVE 1674) (TAIR:AT1G58210.1); Has 29295 Blast hits to 18993 proteins in 958 species: Archae - 371; Bacteria - 2267; Metazoa - 15624; Fungi - 2220; Plants - 1023; Viruses - 107; Other Eukaryotes - 7683 (source: NCBI BLink).  protein_id AT1G09720.1p  transcript_id AT1G09720.1  protein_id AT1G09720.1p  transcript_id AT1G09720.1  
At1g09730	chr1:003154098	0.0	C/3154098-3154236,3153321-3153754,3153010-3153237,3152674-3152871,3152458-3152578,3151913-3152021,3151452-3151508,3151160-3151291,3150772-3150972,3150637-3150692,3150464-3150557,3150119-3150209,3149385-3149504,3148658-3149080,3148017-3148568	AT1G09730.1  CDS  gene_syn F21M12.29, F21M12_29  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_component cellular_component|GO:0005575||ND  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product Ulp1 protease family protein  note Ulp1 protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: Ulp1 protease family protein (TAIR:AT4G33620.1); Has 1334 Blast hits to 1209 proteins in 162 species: Archae - 2; Bacteria - 12; Metazoa - 733; Fungi - 219; Plants - 125; Viruses - 7; Other Eukaryotes - 236 (source: NCBI BLink).  protein_id AT1G09730.1p  transcript_id AT1G09730.1  protein_id AT1G09730.1p  transcript_id AT1G09730.1  
At1g09740	chr1:003154603	0.0	W/3154603-3154804,3154896-3154999,3155217-3155335,3155744-3155834	AT1G09740.1  CDS  gene_syn F21M12.12, F21M12_12  go_process response to stress|GO:0006950||IEA  go_component cellular_component|GO:0005575||ND  go_process response to stress|GO:0006950||ISS  go_function molecular_function|GO:0003674||ND  product ethylene-responsive protein, putative  note ethylene-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: universal stress protein (USP) family protein (TAIR:AT3G11930.1); Has 2952 Blast hits to 2858 proteins in 613 species: Archae - 247; Bacteria - 2061; Metazoa - 48; Fungi - 51; Plants - 388; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).  protein_id AT1G09740.1p  transcript_id AT1G09740.1  protein_id AT1G09740.1p  transcript_id AT1G09740.1  
At1g09750	chr1:003157541	0.0	W/3157541-3158593,3158664-3158960	AT1G09750.1  CDS  gene_syn F21M12.13, F21M12_13  go_component cell wall|GO:0005618|15593128|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  product chloroplast nucleoid DNA-binding protein-related  note chloroplast nucleoid DNA-binding protein-related; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: apoplast, cell wall, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT3G54400.1); Has 1789 Blast hits to 1780 proteins in 198 species: Archae - 0; Bacteria - 2; Metazoa - 357; Fungi - 250; Plants - 1089; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).  protein_id AT1G09750.1p  transcript_id AT1G09750.1  protein_id AT1G09750.1p  transcript_id AT1G09750.1  
At1g09760	chr1:003161522	0.0	C/3161522-3161603,3161381-3161421,3160888-3161017,3160582-3160787,3159923-3160081,3159752-3159802,3159578-3159652,3159476-3159481	AT1G09760.1  CDS  gene_syn F21M12.14, F21M12_14, U2 small nuclear ribonucleoprotein A, U2A   gene U2A   go_component nucleus|GO:0005634|14617066|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component nucleoplasm|GO:0005654|15133128|IDA  go_component cytoplasm|GO:0005737|15133128|IDA  go_component Cajal body|GO:0015030|15133128|IDA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|15133128|IDA  go_process response to cold|GO:0009409|14617066|IEP  go_function protein binding|GO:0005515||ISS  product U2A  (U2 small nuclear ribonucleoprotein A); protein binding  note U2 small nuclear ribonucleoprotein A (U2A ); FUNCTIONS IN: protein binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, response to cold; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U2A'/phosphoprotein 32 family A, C-terminal (InterPro:IPR003603); Has 5479 Blast hits to 4495 proteins in 302 species: Archae - 0; Bacteria - 1581; Metazoa - 2979; Fungi - 220; Plants - 106; Viruses - 2; Other Eukaryotes - 591 (source: NCBI BLink).  protein_id AT1G09760.1p  transcript_id AT1G09760.1  protein_id AT1G09760.1p  transcript_id AT1G09760.1  
At1g09770	chr1:003162002	0.0	W/3162002-3162178,3162444-3164162,3164395-3164676,3164766-3165122	AT1G09770.1  CDS  gene_syn ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5, ARABIDOPSIS THALIANA MYB DOMAIN CELL DIVISION CYCLE 5, ATCDC5, ATMYBCDC5, CDC5, CELL DIVISION CYCLE 5, F21M12.15, F21M12_15  gene ATCDC5  function Member of MYB3R- and R2R3- type MYB- encoding genes. Essential for plant innate immunity. Interacts with MOS4 and PRL1.  go_component chloroplast|GO:0009507|15028209|IDA  go_process defense response signaling pathway, resistance gene-dependent|GO:0009870|17575050|IMP  go_process defense response signaling pathway, resistance gene-independent|GO:0010204|17575050|IMP  go_process defense response to bacterium|GO:0042742|17575050|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process defense response to fungus|GO:0050832|17575050|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5); DNA binding / transcription factor  note ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5 (ATCDC5); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: defense response signaling pathway, resistance gene-independent, defense response signaling pathway, resistance gene-dependent, defense response to fungus, defense response to bacterium, regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB3R-5 (MYB DOMAIN PROTEIN 3R-5); DNA binding / transcription factor (TAIR:AT5G02320.1); Has 10151 Blast hits to 8135 proteins in 531 species: Archae - 9; Bacteria - 249; Metazoa - 3171; Fungi - 645; Plants - 3006; Viruses - 8; Other Eukaryotes - 3063 (source: NCBI BLink).  protein_id AT1G09770.1p  transcript_id AT1G09770.1  protein_id AT1G09770.1p  transcript_id AT1G09770.1  
At1g09780	chr1:003167654	0.0	C/3167654-3167812,3167303-3167581,3166583-3167211,3166224-3166416,3166039-3166134,3165798-3165953,3165550-3165711	AT1G09780.1  CDS  gene_syn F21M12.16, F21M12_16  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function catalytic activity|GO:0003824||IEA  go_function phosphoglycerate mutase activity|GO:0004619||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function metal ion binding|GO:0046872||IEA  go_component mitochondrial envelope|GO:0005740|12953116|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process response to cold|GO:0009409|16574749|IEP  go_function 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity|GO:0046537||ISS  product 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative  note 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative; FUNCTIONS IN: manganese ion binding, phosphoglycerate mutase activity, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity, catalytic activity, metal ion binding; INVOLVED IN: response to cadmium ion, response to cold; LOCATED IN: cytosol, mitochondrial envelope, chloroplast, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Alkaline phosphatase-like, alpha/beta/alpha (InterPro:IPR017849), Metalloenzyme (InterPro:IPR006124), BPG-independent PGAM, N-terminal (InterPro:IPR011258), Alkaline-phosphatase-like, core domain (InterPro:IPR017850), Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (InterPro:IPR005995); BEST Arabidopsis thaliana protein match is: 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative (TAIR:AT3G08590.2); Has 3363 Blast hits to 3360 proteins in 901 species: Archae - 36; Bacteria - 1671; Metazoa - 32; Fungi - 52; Plants - 344; Viruses - 0; Other Eukaryotes - 1228 (source: NCBI BLink).  protein_id AT1G09780.1p  transcript_id AT1G09780.1  protein_id AT1G09780.1p  transcript_id AT1G09780.1  
At1g09790	chr1:003170753	0.0	C/3170753-3170819,3170575-3170687,3169589-3170045,3169327-3169471,3168954-3169234,3168568-3168869	AT1G09790.1  CDS  gene_syn COBL6, COBRA-LIKE PROTEIN 6 PRECURSOR, F21M12.17, F21M12_17  gene COBL6  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12376623|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product COBL6 (COBRA-LIKE PROTEIN 6 PRECURSOR)  note COBRA-LIKE PROTEIN 6 PRECURSOR (COBL6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918), COBRA-like (InterPro:IPR017391); BEST Arabidopsis thaliana protein match is: COBL1 (COBRA-LIKE PROTEIN 1 PRECURSOR) (TAIR:AT3G02210.1); Has 240 Blast hits to 240 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 240; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G09790.1p  transcript_id AT1G09790.1  protein_id AT1G09790.1p  transcript_id AT1G09790.1  
At1g09795	chr1:003173588	0.0	W/3173588-3173884,3174454-3174513,3174620-3174733,3174997-3175062,3175141-3175248,3175351-3175434,3175753-3175854,3175942-3176055,3176130-3176210,3176305-3176424,3176595-3176690	AT1G09795.1  CDS  gene_syn ATATP-PRT2, ATP PHOSPHORIBOSYL TRANSFERASE 2, HISN1B  gene ATATP-PRT2  function ATP phosphoribosyl transferase, catalyses first step of histidine biosynthesis  go_component chloroplast|GO:0009507|18431481|IDA  go_process histidine biosynthetic process|GO:0000105|10712555|IDA  go_process histidine biosynthetic process|GO:0000105||ISS  go_function ATP phosphoribosyltransferase activity|GO:0003879|10712555|IDA  go_function ATP phosphoribosyltransferase activity|GO:0003879||ISS  product ATATP-PRT2 (ATP PHOSPHORIBOSYL TRANSFERASE 2); ATP phosphoribosyltransferase  note ATP PHOSPHORIBOSYL TRANSFERASE 2 (ATATP-PRT2); FUNCTIONS IN: ATP phosphoribosyltransferase activity; INVOLVED IN: histidine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Histidine biosynthesis HisG: ATP phosphoribosyltransferase (InterPro:IPR001348), ATP phosphoribosyltransferase, conserved site (InterPro:IPR018198), ATP phosphoribosyltransferase, catalytic region (InterPro:IPR013820), Histidine biosynthesis HisG, C-terminal (InterPro:IPR013115), Nitrogen regulatory PII-like, alpha/beta (InterPro:IPR011322); BEST Arabidopsis thaliana protein match is: ATATP-PRT1 (ATP PHOSPHORIBOSYL TRANSFERASE 1); ATP phosphoribosyltransferase (TAIR:AT1G58080.1); Has 4375 Blast hits to 4375 proteins in 1234 species: Archae - 134; Bacteria - 2260; Metazoa - 0; Fungi - 96; Plants - 37; Viruses - 0; Other Eukaryotes - 1848 (source: NCBI BLink).  protein_id AT1G09795.1p  transcript_id AT1G09795.1  protein_id AT1G09795.1p  transcript_id AT1G09795.1  
At1g09800	chr1:003180082	0.0	C/3180082-3180336,3179845-3179901,3179473-3179550,3179152-3179205,3178830-3178912,3178589-3178688,3178390-3178452,3177598-3177867,3177321-3177381,3177121-3177218	AT1G09800.1  CDS  gene_syn F21M12.18, F21M12_18  go_process pseudouridine synthesis|GO:0001522||IEA  go_process tRNA processing|GO:0008033||IEA  go_component cellular_component|GO:0005575||ND  go_function pseudouridine synthase activity|GO:0009982|18599582|TAS  product tRNA pseudouridine synthase family protein  note tRNA pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: tRNA processing, pseudouridine synthesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: tRNA pseudouridine synthase (InterPro:IPR001406); BEST Arabidopsis thaliana protein match is: tRNA pseudouridine synthase family protein (TAIR:AT3G06950.1); Has 6844 Blast hits to 5672 proteins in 1445 species: Archae - 71; Bacteria - 3683; Metazoa - 118; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 2917 (source: NCBI BLink).  protein_id AT1G09800.1p  transcript_id AT1G09800.1  protein_id AT1G09800.1p  transcript_id AT1G09800.1  
At1g09810	chr1:003183327	0.0	C/3183327-3183354,3183129-3183190,3182999-3183047,3182753-3182817,3182478-3182663,3181880-3182353,3181402-3181788,3181138-3181299	AT1G09810.1  CDS  gene_syn ECT11, F21M12.20, F21M12_20, evolutionarily conserved C-terminal region 11  gene ECT11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ECT11 (evolutionarily conserved C-terminal region 11)  note evolutionarily conserved C-terminal region 11 (ECT11); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: YT521-B-like protein (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: ECT8 (evolutionarily conserved C-terminal region 8) (TAIR:AT1G79270.1); Has 670 Blast hits to 669 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 341; Fungi - 69; Plants - 190; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT1G09810.1p  transcript_id AT1G09810.1  protein_id AT1G09810.1p  transcript_id AT1G09810.1  
At1g09812	chr1:003187817	0.0	W/3187817-3188077,3188455-3188580	AT1G09812.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G58007.2); Has 49 Blast hits to 49 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G09812.1p  transcript_id AT1G09812.1  protein_id AT1G09812.1p  transcript_id AT1G09812.1  
At1g09815	chr1:003189460	0.0	W/3189460-3189640,3189857-3190050	AT1G09815.1  CDS  gene_syn POLD4, POLYMERASE DELTA 4  gene POLD4  go_component nucleus|GO:0005634||IEA  go_process DNA replication|GO:0006260||IEA  go_process DNA replication|GO:0006260||ISS  go_function DNA-directed DNA polymerase activity|GO:0003887||ISS  product POLD4 (POLYMERASE DELTA 4); DNA-directed DNA polymerase  note POLYMERASE DELTA 4 (POLD4); FUNCTIONS IN: DNA-directed DNA polymerase activity; INVOLVED IN: DNA replication; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase delta, subunit 4 (InterPro:IPR007218); Has 137 Blast hits to 137 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 58; Plants - 33; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G09815.1p  transcript_id AT1G09815.1  protein_id AT1G09815.1p  transcript_id AT1G09815.1  
At1g09820	chr1:003190594	0.0	C/3190594-3192414	AT1G09820.1  CDS  gene_syn F21M12.21, F21M12_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: EMB2745 (EMBRYO DEFECTIVE 2745) (TAIR:AT5G39710.1); Has 24148 Blast hits to 6074 proteins in 187 species: Archae - 1; Bacteria - 24; Metazoa - 844; Fungi - 592; Plants - 21578; Viruses - 0; Other Eukaryotes - 1109 (source: NCBI BLink).  protein_id AT1G09820.1p  transcript_id AT1G09820.1  protein_id AT1G09820.1p  transcript_id AT1G09820.1  
At1g09830	chr1:003194663	0.0	C/3194663-3194936,3194177-3194550,3193291-3193821,3192783-3193202	AT1G09830.1  CDS  gene_syn F21M12.22, F21M12_22  function glycinamide ribonucleotide synthetase (GAR synthetase) that catalyzes the conversion of phosphoribosyl amine to phosphoribosyl glycineamide  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process purine nucleotide biosynthetic process|GO:0006164|7920700|IGI  go_process purine base biosynthetic process|GO:0009113||ISS  go_function phosphoribosylamine-glycine ligase activity|GO:0004637|7920700|IGI  go_function phosphoribosylamine-glycine ligase activity|GO:0004637||ISS  product phosphoribosylamine--glycine ligase (PUR2)  note phosphoribosylamine--glycine ligase (PUR2); FUNCTIONS IN: phosphoribosylamine-glycine ligase activity; INVOLVED IN: purine nucleotide biosynthetic process, purine base biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PreATP-grasp-like fold (InterPro:IPR016185), ATP-grasp fold (InterPro:IPR011761), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), ATP-grasp fold, subdomain 1 (InterPro:IPR013815), Rudiment single hybrid motif (InterPro:IPR011054), Phosphoribosylglycinamide synthetase (InterPro:IPR000115), Pre-ATP-grasp fold (InterPro:IPR013817); Has 8786 Blast hits to 8784 proteins in 1464 species: Archae - 212; Bacteria - 3808; Metazoa - 195; Fungi - 148; Plants - 41; Viruses - 0; Other Eukaryotes - 4382 (source: NCBI BLink).  protein_id AT1G09830.1p  transcript_id AT1G09830.1  protein_id AT1G09830.1p  transcript_id AT1G09830.1  
At1g09840	chr1:003199381	0.0	C/3199381-3199524,3199161-3199253,3199014-3199073,3198656-3198928,3198443-3198517,3197952-3198008,3197743-3197883,3197596-3197646,3197231-3197326,3196700-3196783,3196515-3196617,3196114-3196202	AT1G09840.1  CDS  gene_syn ATSK41, F21M12.23, F21M12_23, SHAGGY-LIKE PROTEIN KINASE 41  gene ATSK41  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function protein kinase activity|GO:0004672||ISS  product ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41); ATP binding / protein kinase/ protein serine/threonine kinase  note SHAGGY-LIKE PROTEIN KINASE 41 (ATSK41); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42); ATP binding / protein kinase/ protein serine/threonine kinase (TAIR:AT1G57870.2); Has 75349 Blast hits to 74533 proteins in 2475 species: Archae - 36; Bacteria - 5917; Metazoa - 32063; Fungi - 7729; Plants - 14097; Viruses - 329; Other Eukaryotes - 15178 (source: NCBI BLink).  protein_id AT1G09840.1p  transcript_id AT1G09840.1  protein_id AT1G09840.1p  transcript_id AT1G09840.1  
At1g09840	chr1:003199381	0.0	C/3199381-3199524,3199161-3199253,3199014-3199073,3198656-3198928,3198443-3198517,3197952-3198008,3197743-3197883,3197596-3197646,3197231-3197326,3196700-3196783,3196515-3196617,3196114-3196202	AT1G09840.2  CDS  gene_syn ATSK41, F21M12.23, F21M12_23, SHAGGY-LIKE PROTEIN KINASE 41  gene ATSK41  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function protein kinase activity|GO:0004672||ISS  product ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41); ATP binding / protein kinase/ protein serine/threonine kinase  note SHAGGY-LIKE PROTEIN KINASE 41 (ATSK41); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42); ATP binding / protein kinase/ protein serine/threonine kinase (TAIR:AT1G57870.2); Has 75349 Blast hits to 74533 proteins in 2475 species: Archae - 36; Bacteria - 5917; Metazoa - 32063; Fungi - 7729; Plants - 14097; Viruses - 329; Other Eukaryotes - 15178 (source: NCBI BLink).  protein_id AT1G09840.2p  transcript_id AT1G09840.2  protein_id AT1G09840.2p  transcript_id AT1G09840.2  
At1g09840	chr1:003199381	0.0	C/3199381-3199524,3199161-3199253,3199014-3199073,3198656-3198928,3198443-3198517,3197952-3198008,3197743-3197883,3197596-3197646,3197231-3197326,3196700-3196783,3196515-3196617,3196114-3196202	AT1G09840.3  CDS  gene_syn ATSK41, F21M12.23, F21M12_23, SHAGGY-LIKE PROTEIN KINASE 41  gene ATSK41  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function protein kinase activity|GO:0004672||ISS  product ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41); ATP binding / protein kinase/ protein serine/threonine kinase  note SHAGGY-LIKE PROTEIN KINASE 41 (ATSK41); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42); ATP binding / protein kinase/ protein serine/threonine kinase (TAIR:AT1G57870.2); Has 75349 Blast hits to 74533 proteins in 2475 species: Archae - 36; Bacteria - 5917; Metazoa - 32063; Fungi - 7729; Plants - 14097; Viruses - 329; Other Eukaryotes - 15178 (source: NCBI BLink).  protein_id AT1G09840.3p  transcript_id AT1G09840.3  protein_id AT1G09840.3p  transcript_id AT1G09840.3  
At1g09840	chr1:003199381	0.0	C/3199381-3199524,3199161-3199253,3199014-3199073,3198656-3198928,3198443-3198517,3197952-3198008,3197743-3197883,3197596-3197646,3197231-3197326,3196700-3196783,3196515-3196617,3196114-3196202	AT1G09840.4  CDS  gene_syn ATSK41, F21M12.23, F21M12_23, SHAGGY-LIKE PROTEIN KINASE 41  gene ATSK41  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function protein kinase activity|GO:0004672||ISS  product ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41); ATP binding / protein kinase/ protein serine/threonine kinase  note SHAGGY-LIKE PROTEIN KINASE 41 (ATSK41); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42); ATP binding / protein kinase/ protein serine/threonine kinase (TAIR:AT1G57870.2); Has 75349 Blast hits to 74533 proteins in 2475 species: Archae - 36; Bacteria - 5917; Metazoa - 32063; Fungi - 7729; Plants - 14097; Viruses - 329; Other Eukaryotes - 15178 (source: NCBI BLink).  protein_id AT1G09840.4p  transcript_id AT1G09840.4  protein_id AT1G09840.4p  transcript_id AT1G09840.4  
At1g09840	chr1:003199381	0.0	C/3199381-3199524,3199161-3199253,3199014-3199073,3198656-3198928,3198443-3198517,3197952-3198008,3197743-3197883,3197596-3197646,3197231-3197326,3196700-3196783,3196515-3196617,3196114-3196202	AT1G09840.5  CDS  gene_syn ATSK41, F21M12.23, F21M12_23, SHAGGY-LIKE PROTEIN KINASE 41  gene ATSK41  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function protein kinase activity|GO:0004672||ISS  product ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41); ATP binding / protein kinase/ protein serine/threonine kinase  note SHAGGY-LIKE PROTEIN KINASE 41 (ATSK41); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42); ATP binding / protein kinase/ protein serine/threonine kinase (TAIR:AT1G57870.2); Has 75349 Blast hits to 74533 proteins in 2475 species: Archae - 36; Bacteria - 5917; Metazoa - 32063; Fungi - 7729; Plants - 14097; Viruses - 329; Other Eukaryotes - 15178 (source: NCBI BLink).  protein_id AT1G09840.5p  transcript_id AT1G09840.5  protein_id AT1G09840.5p  transcript_id AT1G09840.5  
At1g09840	chr1:003199381	0.0	C/3199381-3199524,3199161-3199253,3199014-3199073,3198656-3198928,3198443-3198517,3197952-3198008,3197743-3197883,3197596-3197646,3197231-3197326,3196700-3196783,3196515-3196617,3196114-3196202	AT1G09840.6  CDS  gene_syn ATSK41, F21M12.23, F21M12_23, SHAGGY-LIKE PROTEIN KINASE 41  gene ATSK41  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function protein kinase activity|GO:0004672||ISS  product ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41); ATP binding / protein kinase/ protein serine/threonine kinase  note SHAGGY-LIKE PROTEIN KINASE 41 (ATSK41); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42); ATP binding / protein kinase/ protein serine/threonine kinase (TAIR:AT1G57870.2); Has 75349 Blast hits to 74533 proteins in 2475 species: Archae - 36; Bacteria - 5917; Metazoa - 32063; Fungi - 7729; Plants - 14097; Viruses - 329; Other Eukaryotes - 15178 (source: NCBI BLink).  protein_id AT1G09840.6p  transcript_id AT1G09840.6  protein_id AT1G09840.6p  transcript_id AT1G09840.6  
At1g09850	chr1:003201848	0.0	W/3201848-3202265,3202709-3202944,3203045-3203185,3203271-3203702,3203789-3203875	AT1G09850.1  CDS  gene_syn F21M12.24, F21M12_24, XBCP3, xylem bark cysteine peptidase 3  gene XBCP3  function Arabidopsis thaliana papain-like cysteine peptidase  go_component vacuole|GO:0005773|15539469|IDA  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_function cysteine-type peptidase activity|GO:0008234||ISS  product XBCP3 (xylem bark cysteine peptidase 3); cysteine-type endopeptidase/ cysteine-type peptidase  note xylem bark cysteine peptidase 3 (XBCP3); FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Granulin (InterPro:IPR000118), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: cysteine proteinase, putative / thiol protease, putative (TAIR:AT5G43060.1); Has 6952 Blast hits to 6272 proteins in 598 species: Archae - 29; Bacteria - 122; Metazoa - 3609; Fungi - 4; Plants - 1229; Viruses - 118; Other Eukaryotes - 1841 (source: NCBI BLink).  protein_id AT1G09850.1p  transcript_id AT1G09850.1  protein_id AT1G09850.1p  transcript_id AT1G09850.1  
At1g09860	chr1:003204136	0.0	C/3204136-3205287	AT1G09860.1  CDS  gene_syn ARABIDOPSIS THALIANA PURINE PERMEASE 16, ATPUP16, F21M12.25, F21M12_25  gene ATPUP16  function Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.  go_component membrane|GO:0016020|10662864|TAS  go_process purine transport|GO:0006863|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345||ISS  product ATPUP16; purine transmembrane transporter  note ATPUP16; FUNCTIONS IN: purine transmembrane transporter activity; INVOLVED IN: purine transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: purine permease-related (TAIR:AT1G57980.1); Has 196 Blast hits to 190 proteins in 7 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 195; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G09860.1p  transcript_id AT1G09860.1  protein_id AT1G09860.1p  transcript_id AT1G09860.1  
At1g09870	chr1:003205817	0.0	W/3205817-3205917,3206111-3206198,3206278-3206571,3206686-3206844,3206964-3207104,3207220-3207276,3207377-3207515,3207609-3207713,3207820-3208010,3208168-3208209,3208298-3208444	AT1G09870.1  CDS  gene_syn F21M12.26, F21M12_26  go_component plasma membrane|GO:0005886|17151019|IDA  go_function acid phosphatase activity|GO:0003993||IEA  go_process biological_process|GO:0008150||ND  go_function acid phosphatase activity|GO:0003993||ISS  product histidine acid phosphatase family protein  note histidine acid phosphatase family protein; FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Histidine acid phosphatase (InterPro:IPR000560), Histidine acid phosphatase, eukaryotic (InterPro:IPR016274); Has 574 Blast hits to 569 proteins in 162 species: Archae - 0; Bacteria - 75; Metazoa - 167; Fungi - 277; Plants - 29; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G09870.1p  transcript_id AT1G09870.1  protein_id AT1G09870.1p  transcript_id AT1G09870.1  
At1g09880	chr1:003211535	0.0	C/3211535-3211653,3211385-3211450,3211184-3211300,3210848-3211109,3210569-3210739,3210331-3210486,3210143-3210249,3209964-3210054,3209731-3209872,3209377-3209650,3209168-3209300,3208828-3209085	AT1G09880.1  CDS  gene_syn F21M12.27, F21M12_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function lyase activity|GO:0016829||ISS  product lyase  note lyase; FUNCTIONS IN: lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325), Carbohydrate-binding-like fold (InterPro:IPR013784), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: lyase (TAIR:AT1G09890.1); Has 138 Blast hits to 131 proteins in 37 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 50; Plants - 73; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G09880.1p  transcript_id AT1G09880.1  protein_id AT1G09880.1p  transcript_id AT1G09880.1  
At1g09890	chr1:003217271	0.0	C/3217271-3217386,3217134-3217184,3216871-3216990,3216682-3216801,3216459-3216600,3216188-3216361,3215958-3216116,3215769-3215875,3215557-3215647,3215327-3215468,3215098-3215254,3214796-3214912,3214582-3214708,3214237-3214467	AT1G09890.1  CDS  gene_syn F21M12.28, F21M12_28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function lyase activity|GO:0016829||ISS  product lyase  note lyase; FUNCTIONS IN: lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, LP.12 twelve leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325), Carbohydrate-binding-like fold (InterPro:IPR013784), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: lyase (TAIR:AT1G09910.1); Has 130 Blast hits to 122 proteins in 34 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 46; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G09890.1p  transcript_id AT1G09890.1  protein_id AT1G09890.1p  transcript_id AT1G09890.1  
At1g09900	chr1:003218133	0.0	W/3218133-3219929	AT1G09900.1  CDS  gene_syn F21M12.38, F21M12_38  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G04760.1); Has 28344 Blast hits to 6234 proteins in 190 species: Archae - 4; Bacteria - 32; Metazoa - 1003; Fungi - 738; Plants - 24926; Viruses - 0; Other Eukaryotes - 1641 (source: NCBI BLink).  protein_id AT1G09900.1p  transcript_id AT1G09900.1  protein_id AT1G09900.1p  transcript_id AT1G09900.1  
At1g09910	chr1:003224379	0.0	C/3224379-3224451,3223734-3223831,3223528-3223649,3223353-3223403,3222912-3223031,3222714-3222833,3222345-3222486,3221966-3222136,3221731-3221886,3221533-3221639,3221328-3221418,3221017-3221158,3220790-3220946,3220466-3220706,3220151-3220387	AT1G09910.1  CDS  gene_syn F21M12.30, F21M12_30  go_process carbohydrate metabolic process|GO:0005975||IEA  go_component cellular_component|GO:0005575||ND  go_function lyase activity|GO:0016829||ISS  product lyase  note lyase; FUNCTIONS IN: lyase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325), Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Carbohydrate-binding-like fold (InterPro:IPR013784), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: lyase (TAIR:AT1G09890.1); Has 149 Blast hits to 139 proteins in 38 species: Archae - 0; Bacteria - 21; Metazoa - 0; Fungi - 52; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G09910.1p  transcript_id AT1G09910.1  protein_id AT1G09910.1p  transcript_id AT1G09910.1  
At1g09920	chr1:003226817	0.0	C/3226817-3226860,3225994-3226129,3225304-3225441,3225116-3225225,3224863-3225013	AT1G09920.1  CDS  gene_syn F21M12.31, F21M12_31  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product TRAF-type zinc finger-related  note TRAF-type zinc finger-related; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, TRAF-type (InterPro:IPR001293); BEST Arabidopsis thaliana protein match is: PRLI-interacting factor K (TAIR:AT4G15420.1); Has 773 Blast hits to 745 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 538; Fungi - 70; Plants - 39; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink).  protein_id AT1G09920.1p  transcript_id AT1G09920.1  protein_id AT1G09920.1p  transcript_id AT1G09920.1  
At1g09930	chr1:003229555	0.0	C/3229555-3230043,3229365-3229462,3228704-3229267,3228373-3228625,3227490-3228290	AT1G09930.1  CDS  gene_syn ATOPT2, F21M12.32, F21M12_32, OLIGOPEPTIDE TRANSPORTER 2  gene ATOPT2  function oligopeptide transporter  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|11788749|ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function oligopeptide transporter activity|GO:0015198|11788749|ISS  go_function oligopeptide transporter activity|GO:0015198||ISS  product ATOPT2; oligopeptide transporter  note ATOPT2; FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: sperm cell, flower, pollen tube; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Tetrapeptide transporter, OPT1/isp4 (InterPro:IPR004648), Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: OPT4 (OLIGOPEPTIDE TRANSPORTER 4); oligopeptide transporter (TAIR:AT5G64410.1); Has 819 Blast hits to 806 proteins in 91 species: Archae - 0; Bacteria - 41; Metazoa - 0; Fungi - 560; Plants - 207; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G09930.1p  transcript_id AT1G09930.1  protein_id AT1G09930.1p  transcript_id AT1G09930.1  
At1g09932	chr1:003232883	0.0	C/3232883-3232924,3232670-3232777,3232477-3232556,3232017-3232137,3231737-3231811,3231544-3231632,3231065-3231184,3230881-3230922,3230716-3230800	AT1G09932.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product phosphoglycerate/bisphosphoglycerate mutase-related  note phosphoglycerate/bisphosphoglycerate mutase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078); BEST Arabidopsis thaliana protein match is: phosphoglycerate/bisphosphoglycerate mutase family protein (TAIR:AT2G17280.2); Has 274 Blast hits to 274 proteins in 62 species: Archae - 0; Bacteria - 7; Metazoa - 0; Fungi - 138; Plants - 61; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT1G09932.2p  transcript_id AT1G09932.2  protein_id AT1G09932.2p  transcript_id AT1G09932.2  
At1g09932	chr1:003232965	0.0	C/3232965-3233027,3232670-3232777,3232477-3232556,3232017-3232137,3231737-3231811,3231544-3231632,3231065-3231184,3230881-3230922,3230716-3230800	AT1G09932.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product phosphoglycerate/bisphosphoglycerate mutase-related  note phosphoglycerate/bisphosphoglycerate mutase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078); BEST Arabidopsis thaliana protein match is: phosphoglycerate/bisphosphoglycerate mutase family protein (TAIR:AT2G17280.2); Has 318 Blast hits to 318 proteins in 67 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 176; Plants - 65; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT1G09932.1p  transcript_id AT1G09932.1  protein_id AT1G09932.1p  transcript_id AT1G09932.1  
At1g09935	chr1:003235480	0.0	C/3235480-3235530,3235271-3235378,3235079-3235158,3234872-3234974,3234693-3234767,3234494-3234582,3234286-3234405,3234165-3234209,3234060-3234084	AT1G09935.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function catalytic activity|GO:0003824||ISS  product phosphoglycerate/bisphosphoglycerate mutase family protein  note phosphoglycerate/bisphosphoglycerate mutase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078), Phosphoglycerate/bisphosphoglycerate mutase (InterPro:IPR001345); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G58280.3); Has 377 Blast hits to 377 proteins in 102 species: Archae - 0; Bacteria - 77; Metazoa - 0; Fungi - 127; Plants - 68; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT1G09935.1p  transcript_id AT1G09935.1  protein_id AT1G09935.1p  transcript_id AT1G09935.1  
At1g09940	chr1:003239025	0.0	C/3239025-3239262,3238496-3238737,3237224-3238336	AT1G09940.1  CDS  gene_syn F21M12.33, F21M12_33, HEMA2  gene HEMA2  function Encodes glutamyl-tRNA reductase. Involved in heme biosynthesis in non-photosynthetic tissues and induced by oxidative stress in photosynthetic tissues to supply heme for defensive hemoproteins  go_component cytoplasm|GO:0005737||IEA  go_process porphyrin biosynthetic process|GO:0006779|8605295|TAS  go_process heme biosynthetic process|GO:0006783|17416636|IMP  go_process response to oxidative stress|GO:0006979|17416636|IEP  go_process tetrapyrrole biosynthetic process|GO:0033014|17416636|IMP  go_function glutamyl-tRNA reductase activity|GO:0008883|8605295|IGI  product HEMA2; glutamyl-tRNA reductase  note HEMA2; FUNCTIONS IN: glutamyl-tRNA reductase activity; INVOLVED IN: response to oxidative stress, heme biosynthetic process, tetrapyrrole biosynthetic process, porphyrin biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase (InterPro:IPR006151), Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, conserved site (InterPro:IPR018214), Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, C-terminal (InterPro:IPR015896), NAD(P)-binding (InterPro:IPR016040), Tetrapyrrole biosynthesis, glutamyl-tRNA reductase (InterPro:IPR000343), Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal (InterPro:IPR015895); BEST Arabidopsis thaliana protein match is: HEMA1; glutamyl-tRNA reductase (TAIR:AT1G58290.1); Has 3352 Blast hits to 3337 proteins in 1025 species: Archae - 154; Bacteria - 2081; Metazoa - 0; Fungi - 0; Plants - 188; Viruses - 0; Other Eukaryotes - 929 (source: NCBI BLink).  protein_id AT1G09940.1p  transcript_id AT1G09940.1  protein_id AT1G09940.1p  transcript_id AT1G09940.1  
At1g09950	chr1:003240849	0.0	C/3240849-3241541	AT1G09950.1  CDS  gene_syn F21M12.34, F21M12_34  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product transcription factor-related  note transcription factor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, flower, root, leaf; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: ZW2 (TAIR:AT1G58330.1); Has 330 Blast hits to 329 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 330; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G09950.1p  transcript_id AT1G09950.1  protein_id AT1G09950.1p  transcript_id AT1G09950.1  
At1g09960	chr1:003244258	0.0	W/3244258-3244795,3245159-3245886,3246023-3246086,3246215-3246258,3246560-3246718	AT1G09960.1  CDS  gene_syn ATSUT4, F21M12.35, F21M12_35, SUCROSE TRANSPORTER 4, SUT4, suc4  gene SUT4  function low affinity (10mM) sucrose transporter in sieve elements (phloem)  go_process sucrose transport|GO:0015770||IEA  go_component vacuole|GO:0005773|10948254|IDA  go_component plasma membrane|GO:0005886|10948254|IDA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function sucrose:hydrogen symporter activity|GO:0008506||ISS  go_function sucrose transmembrane transporter activity|GO:0008515|10948254|IGI  go_function sucrose transmembrane transporter activity|GO:0008515|10948254|IMP  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product SUT4 (SUCROSE TRANSPORTER 4); carbohydrate transmembrane transporter/ sucrose transmembrane transporter/ sucrose:hydrogen symporter/ sugar:hydrogen symporter  note SUCROSE TRANSPORTER 4 (SUT4); FUNCTIONS IN: sucrose transmembrane transporter activity, carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, sucrose:hydrogen symporter activity; INVOLVED IN: sucrose transport; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sucrose/H+ symporter, plant (InterPro:IPR005989), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: SUC2 (SUCROSE-PROTON SYMPORTER 2); carbohydrate transmembrane transporter/ sucrose transmembrane transporter/ sucrose:hydrogen symporter/ sugar:hydrogen symporter (TAIR:AT1G22710.1); Has 1770 Blast hits to 1661 proteins in 375 species: Archae - 21; Bacteria - 604; Metazoa - 407; Fungi - 135; Plants - 245; Viruses - 0; Other Eukaryotes - 358 (source: NCBI BLink).  protein_id AT1G09960.1p  transcript_id AT1G09960.1  protein_id AT1G09960.1p  transcript_id AT1G09960.1  
At1g09970	chr1:003252408	0.0	W/3252408-3254964,3255052-3255428	AT1G09970.2  CDS  gene_syn F21M12.36, F21M12_36, LRR XI-23  gene LRR XI-23  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_process protein amino acid autophosphorylation|GO:0046777|18552232|IDA  go_function protein kinase activity|GO:0004672|18552232|IDA  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product LRR XI-23; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note LRR XI-23; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid autophosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: IKU2 (HAIKU2); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase (TAIR:AT3G19700.1); Has 140780 Blast hits to 97610 proteins in 3279 species: Archae - 93; Bacteria - 12618; Metazoa - 53588; Fungi - 7077; Plants - 48080; Viruses - 376; Other Eukaryotes - 18948 (source: NCBI BLink).  protein_id AT1G09970.2p  transcript_id AT1G09970.2  protein_id AT1G09970.2p  transcript_id AT1G09970.2  
At1g09970	chr1:003252408	0.0	W/3252408-3254964,3255055-3255428	AT1G09970.1  CDS  gene_syn F21M12.36, F21M12_36, LRR XI-23  gene LRR XI-23  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_process protein amino acid autophosphorylation|GO:0046777|18552232|IDA  go_function protein kinase activity|GO:0004672|18552232|IDA  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product LRR XI-23; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note LRR XI-23; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid autophosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: IKU2 (HAIKU2); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase (TAIR:AT3G19700.1); Has 143488 Blast hits to 100447 proteins in 3382 species: Archae - 100; Bacteria - 12755; Metazoa - 55128; Fungi - 7263; Plants - 48265; Viruses - 446; Other Eukaryotes - 19531 (source: NCBI BLink).  protein_id AT1G09970.1p  transcript_id AT1G09970.1  protein_id AT1G09970.1p  transcript_id AT1G09970.1  
At1g09980	chr1:003260694	0.0	C/3260694-3260866,3260509-3260594,3260178-3260332,3259642-3259895,3259495-3259549,3258865-3259104,3258637-3258767,3258354-3258537,3258208-3258267,3257878-3258126,3257385-3257643,3257086-3257291,3256935-3256985,3256541-3256843	AT1G09980.2  CDS  gene_syn T27I1.1  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF676, hydrolase-like (InterPro:IPR007751); BEST Arabidopsis thaliana protein match is: ZW18 (TAIR:AT1G58350.2); Has 342 Blast hits to 275 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 214; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT1G09980.2p  transcript_id AT1G09980.2  protein_id AT1G09980.2p  transcript_id AT1G09980.2  
At1g09980	chr1:003260694	0.0	C/3260694-3260866,3260509-3260594,3260178-3260332,3259642-3259895,3259495-3259549,3258865-3259104,3258637-3258770,3258354-3258537,3258208-3258267,3257878-3258126,3257385-3257643,3257086-3257291,3256935-3256985,3256541-3256843	AT1G09980.1  CDS  gene_syn T27I1.1  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF676, hydrolase-like (InterPro:IPR007751); BEST Arabidopsis thaliana protein match is: ZW18 (TAIR:AT1G58350.2); Has 342 Blast hits to 275 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 214; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT1G09980.1p  transcript_id AT1G09980.1  protein_id AT1G09980.1p  transcript_id AT1G09980.1  
At1g09995	chr1:003263351	0.0	C/3263351-3263458,3262750-3262908	AT1G09995.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: helicase-related (TAIR:AT1G79890.1); Has 14 Blast hits to 14 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G09995.1p  transcript_id AT1G09995.1  protein_id AT1G09995.1p  transcript_id AT1G09995.1  
At1g10000	chr1:003263877	0.0	C/3263877-3264788	AT1G10000.1  CDS  gene_syn T27I1.2, T27I1_2  go_function nucleic acid binding|GO:0003676||IEA  go_function ribonuclease H activity|GO:0004523||IEA  go_process biological_process|GO:0008150||ND  product nucleic acid binding / ribonuclease H  note nucleic acid binding / ribonuclease H; FUNCTIONS IN: ribonuclease H activity, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706), Ribonuclease H (InterPro:IPR002156); BEST Arabidopsis thaliana protein match is: beta-galactosidase (TAIR:AT2G06845.1); Has 295 Blast hits to 295 proteins in 14 species: Archae - 2; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 291; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G10000.1p  transcript_id AT1G10000.1  protein_id AT1G10000.1p  transcript_id AT1G10000.1  
At1g10010	chr1:003265976	0.0	W/3265976-3266297,3266979-3267072,3267187-3267401,3267500-3267642,3267881-3268108,3268301-3268726	AT1G10010.1  CDS  gene_syn AAP8, AMINO ACID PERMEASE 8, T27I1.3, T27I1_3  gene AAP8  function Encodes a high affinity amino acid transporter that is probably responsible for import of organic nitrogen into developing seeds. One of eight gene family members that encode amino acid permeases. Most closely related to AAP1 (75%) identity.  go_component membrane|GO:0016020|12244056|ISS  go_process amino acid transport|GO:0006865|12244056|IGI  go_function amino acid transmembrane transporter activity|GO:0015171|12244056|IGI  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product AAP8; amino acid transmembrane transporter  note AAP8; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: membrane; EXPRESSED IN: embryo, fruit, funicle; EXPRESSED DURING: C globular stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: AAP1 (AMINO ACID PERMEASE 1); amino acid transmembrane transporter/ neutral amino acid transmembrane transporter (TAIR:AT1G58360.1); Has 1981 Blast hits to 1972 proteins in 179 species: Archae - 0; Bacteria - 15; Metazoa - 678; Fungi - 342; Plants - 748; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink).  protein_id AT1G10010.1p  transcript_id AT1G10010.1  protein_id AT1G10010.1p  transcript_id AT1G10010.1  
At1g10020	chr1:003271107	0.0	C/3271107-3271732,3269939-3270698	AT1G10020.1  CDS  gene_syn T27I1.4, T27I1_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1005 (InterPro:IPR010410); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29310.1); Has 93 Blast hits to 93 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 6; Plants - 79; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G10020.1p  transcript_id AT1G10020.1  protein_id AT1G10020.1p  transcript_id AT1G10020.1  
At1g10030	chr1:003273972	0.0	W/3273972-3274086,3275254-3275460,3275564-3275631	AT1G10030.1  CDS  gene_syn Arabidopsis homolog of yeast ergosterol28, ERG28, T27I1.5, T27I1_5  gene ERG28  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_component integral to membrane|GO:0016021||ISS  go_process biological_process|GO:0008150||ND  product ERG28 (Arabidopsis homolog of yeast ergosterol28)  note Arabidopsis homolog of yeast ergosterol28 (ERG28); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Erg28-like (InterPro:IPR005352); Has 155 Blast hits to 155 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 58; Fungi - 64; Plants - 23; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G10030.1p  transcript_id AT1G10030.1  protein_id AT1G10030.1p  transcript_id AT1G10030.1  
At1g10040	chr1:003278190	0.0	C/3278190-3278464,3278045-3278112,3277765-3277835,3277332-3277586,3277001-3277161,3276852-3276907,3276657-3276709,3276437-3276566,3276258-3276359,3276124-3276179	AT1G10040.2  CDS  gene_syn T27I1.6, T27I1_6  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF676, hydrolase-like (InterPro:IPR007751); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25770.1); Has 544 Blast hits to 540 proteins in 149 species: Archae - 0; Bacteria - 23; Metazoa - 136; Fungi - 170; Plants - 98; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT1G10040.2p  transcript_id AT1G10040.2  protein_id AT1G10040.2p  transcript_id AT1G10040.2  
At1g10040	chr1:003278190	0.0	C/3278190-3278464,3278045-3278112,3277765-3277835,3277332-3277586,3277001-3277161,3276852-3276907,3276657-3276709,3276437-3276566,3276262-3276359,3276108-3276179	AT1G10040.1  CDS  gene_syn T27I1.6, T27I1_6  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF676, hydrolase-like (InterPro:IPR007751); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25770.1); Has 553 Blast hits to 544 proteins in 149 species: Archae - 0; Bacteria - 23; Metazoa - 136; Fungi - 170; Plants - 104; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).  protein_id AT1G10040.1p  transcript_id AT1G10040.1  protein_id AT1G10040.1p  transcript_id AT1G10040.1  
At1g10050	chr1:003279270	0.0	W/3279270-3279607,3279690-3279849,3280286-3280632,3280715-3280874,3280971-3281317,3281440-3281617,3281701-3282246,3282329-3283444	AT1G10050.1  CDS  gene_syn ATXYN2, T27I1.7, T27I1_7  function Encodes a putative glycosyl hydrolase family 10 protein (xylanase).  go_process carbohydrate metabolic process|GO:0005975||IEA  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function endo-1,4-beta-xylanase activity|GO:0031176|12154138|ISS  product glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein  note glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein; FUNCTIONS IN: endo-1,4-beta-xylanase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Carbohydrate-binding, CenC-like (InterPro:IPR003305), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: RXF12; endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G58370.1); Has 1575 Blast hits to 1335 proteins in 275 species: Archae - 0; Bacteria - 809; Metazoa - 52; Fungi - 276; Plants - 256; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink).  protein_id AT1G10050.1p  transcript_id AT1G10050.1  protein_id AT1G10050.1p  transcript_id AT1G10050.1  
At1g10060	chr1:003284445	0.0	W/3284445-3284501,3284652-3284725,3285166-3285340,3285425-3285601,3285687-3285818,3285897-3285995,3286092-3286208,3286304-3286358,3286534-3286577	AT1G10060.1  CDS  gene_syn ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1, ATBCAT-1, T27I1.8, T27I1_8  gene ATBCAT-1  function encodes a mitochondrial branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.  go_process metabolic process|GO:0008152||IEA  go_process branched chain family amino acid metabolic process|GO:0009081||IEA  go_component mitochondrion|GO:0005739|12068099|IDA  go_function catalytic activity|GO:0003824||ISS  go_function branched-chain-amino-acid transaminase activity|GO:0004084|12068099|IGI  go_function branched-chain-amino-acid transaminase activity|GO:0004084|15821880|IDA  product branched-chain amino acid aminotransferase 1 / branched-chain amino acid transaminase 1 (BCAT1)  note ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (ATBCAT-1); FUNCTIONS IN: branched-chain-amino-acid transaminase activity, catalytic activity; INVOLVED IN: branched chain family amino acid metabolic process, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Aminotransferase, class IV, conserved site (InterPro:IPR018300), Branched-chain amino acid aminotransferase II (InterPro:IPR005786); BEST Arabidopsis thaliana protein match is: ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2); branched-chain-amino-acid transaminase/ catalytic (TAIR:AT1G10070.2); Has 4118 Blast hits to 4116 proteins in 1209 species: Archae - 70; Bacteria - 2392; Metazoa - 242; Fungi - 241; Plants - 134; Viruses - 0; Other Eukaryotes - 1039 (source: NCBI BLink).  protein_id AT1G10060.1p  transcript_id AT1G10060.1  protein_id AT1G10060.1p  transcript_id AT1G10060.1  
At1g10060	chr1:003284445	0.0	W/3284445-3284501,3284652-3284725,3285166-3285340,3285425-3285601,3285687-3285818,3285897-3285995,3286092-3286208,3286304-3286399,3286534-3286646,3286723-3286837	AT1G10060.2  CDS  gene_syn ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1, ATBCAT-1, T27I1.8, T27I1_8  gene ATBCAT-1  function encodes a mitochondrial branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.  go_process metabolic process|GO:0008152||IEA  go_process branched chain family amino acid metabolic process|GO:0009081||IEA  go_component mitochondrion|GO:0005739|12068099|IDA  go_function catalytic activity|GO:0003824||ISS  go_function branched-chain-amino-acid transaminase activity|GO:0004084|12068099|IGI  go_function branched-chain-amino-acid transaminase activity|GO:0004084|15821880|IDA  product branched-chain amino acid aminotransferase 1 / branched-chain amino acid transaminase 1 (BCAT1)  note ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (ATBCAT-1); FUNCTIONS IN: branched-chain-amino-acid transaminase activity, catalytic activity; INVOLVED IN: branched chain family amino acid metabolic process, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Aminotransferase, class IV, conserved site (InterPro:IPR018300), Branched-chain amino acid aminotransferase II (InterPro:IPR005786); BEST Arabidopsis thaliana protein match is: ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2); branched-chain-amino-acid transaminase/ catalytic (TAIR:AT1G10070.2); Has 8252 Blast hits to 8250 proteins in 1371 species: Archae - 99; Bacteria - 4091; Metazoa - 244; Fungi - 257; Plants - 157; Viruses - 0; Other Eukaryotes - 3404 (source: NCBI BLink).  protein_id AT1G10060.2p  transcript_id AT1G10060.2  protein_id AT1G10060.2p  transcript_id AT1G10060.2  
At1g10060	chr1:003285233	0.0	W/3285233-3285340,3285425-3285601,3285687-3285818,3285897-3285995,3286092-3286208,3286304-3286399,3286534-3286646,3286723-3286837	AT1G10060.3  CDS  gene_syn ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1, ATBCAT-1, T27I1.8, T27I1_8  gene ATBCAT-1  function encodes a mitochondrial branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.  go_process metabolic process|GO:0008152||IEA  go_process branched chain family amino acid metabolic process|GO:0009081||IEA  go_component mitochondrion|GO:0005739|12068099|IDA  go_function catalytic activity|GO:0003824||ISS  go_function branched-chain-amino-acid transaminase activity|GO:0004084|12068099|IGI  go_function branched-chain-amino-acid transaminase activity|GO:0004084|15821880|IDA  product branched-chain amino acid aminotransferase 1 / branched-chain amino acid transaminase 1 (BCAT1)  note ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (ATBCAT-1); FUNCTIONS IN: branched-chain-amino-acid transaminase activity, catalytic activity; INVOLVED IN: branched chain family amino acid metabolic process, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Aminotransferase, class IV, conserved site (InterPro:IPR018300), Branched-chain amino acid aminotransferase II (InterPro:IPR005786); BEST Arabidopsis thaliana protein match is: ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2); branched-chain-amino-acid transaminase/ catalytic (TAIR:AT1G10070.3); Has 8254 Blast hits to 8254 proteins in 1374 species: Archae - 99; Bacteria - 4101; Metazoa - 244; Fungi - 259; Plants - 155; Viruses - 0; Other Eukaryotes - 3396 (source: NCBI BLink).  protein_id AT1G10060.3p  transcript_id AT1G10060.3  protein_id AT1G10060.3p  transcript_id AT1G10060.3  
At1g10070	chr1:003288255	0.0	W/3288255-3288320,3288431-3288504,3288602-3288779,3288861-3289037,3289120-3289251,3289329-3289427,3289503-3289619,3289682-3289777,3289856-3289968,3290050-3290164	AT1G10070.1  CDS  gene_syn ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2, ATBCAT-2, T27I1.9, T27I1_9  gene ATBCAT-2  function Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.  go_process metabolic process|GO:0008152||IEA  go_process branched chain family amino acid metabolic process|GO:0009081||IEA  go_component chloroplast|GO:0009507|12068099|IDA  go_function catalytic activity|GO:0003824||ISS  go_function branched-chain-amino-acid transaminase activity|GO:0004084|12068099|IGI  product ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2); branched-chain-amino-acid transaminase/ catalytic  note ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2 (ATBCAT-2); FUNCTIONS IN: branched-chain-amino-acid transaminase activity, catalytic activity; INVOLVED IN: branched chain family amino acid metabolic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Aminotransferase, class IV, conserved site (InterPro:IPR018300), Branched-chain amino acid aminotransferase II (InterPro:IPR005786); BEST Arabidopsis thaliana protein match is: BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3); branched-chain-amino-acid transaminase/ catalytic (TAIR:AT3G49680.2); Has 8227 Blast hits to 8227 proteins in 1365 species: Archae - 99; Bacteria - 4060; Metazoa - 244; Fungi - 259; Plants - 155; Viruses - 0; Other Eukaryotes - 3410 (source: NCBI BLink).  protein_id AT1G10070.1p  transcript_id AT1G10070.1  protein_id AT1G10070.1p  transcript_id AT1G10070.1  
At1g10070	chr1:003288255	0.0	W/3288255-3288320,3288431-3288504,3288602-3288779,3288861-3289037,3289120-3289251,3289329-3289427,3289503-3289619,3289682-3289777,3289856-3289968,3290050-3290164	AT1G10070.2  CDS  gene_syn ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2, ATBCAT-2, T27I1.9, T27I1_9  gene ATBCAT-2  function Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.  go_process metabolic process|GO:0008152||IEA  go_process branched chain family amino acid metabolic process|GO:0009081||IEA  go_component chloroplast|GO:0009507|12068099|IDA  go_function catalytic activity|GO:0003824||ISS  go_function branched-chain-amino-acid transaminase activity|GO:0004084|12068099|IGI  product ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2); branched-chain-amino-acid transaminase/ catalytic  note ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2 (ATBCAT-2); FUNCTIONS IN: branched-chain-amino-acid transaminase activity, catalytic activity; INVOLVED IN: branched chain family amino acid metabolic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Aminotransferase, class IV, conserved site (InterPro:IPR018300), Branched-chain amino acid aminotransferase II (InterPro:IPR005786); BEST Arabidopsis thaliana protein match is: BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3); branched-chain-amino-acid transaminase/ catalytic (TAIR:AT3G49680.2); Has 8227 Blast hits to 8227 proteins in 1365 species: Archae - 99; Bacteria - 4060; Metazoa - 244; Fungi - 259; Plants - 155; Viruses - 0; Other Eukaryotes - 3410 (source: NCBI BLink).  protein_id AT1G10070.2p  transcript_id AT1G10070.2  protein_id AT1G10070.2p  transcript_id AT1G10070.2  
At1g10070	chr1:003288672	0.0	W/3288672-3288779,3288861-3289037,3289120-3289251,3289329-3289427,3289503-3289619,3289682-3289777,3289856-3289968,3290050-3290164	AT1G10070.3  CDS  gene_syn ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2, ATBCAT-2, T27I1.9, T27I1_9  gene ATBCAT-2  function Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.  go_process metabolic process|GO:0008152||IEA  go_process branched chain family amino acid metabolic process|GO:0009081||IEA  go_component chloroplast|GO:0009507|12068099|IDA  go_function catalytic activity|GO:0003824||ISS  go_function branched-chain-amino-acid transaminase activity|GO:0004084|12068099|IGI  product ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2); branched-chain-amino-acid transaminase/ catalytic  note ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2 (ATBCAT-2); FUNCTIONS IN: branched-chain-amino-acid transaminase activity, catalytic activity; INVOLVED IN: branched chain family amino acid metabolic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Aminotransferase, class IV, conserved site (InterPro:IPR018300), Branched-chain amino acid aminotransferase II (InterPro:IPR005786); BEST Arabidopsis thaliana protein match is: ATBCAT-5; branched-chain-amino-acid transaminase/ catalytic (TAIR:AT5G65780.1); Has 8220 Blast hits to 8220 proteins in 1365 species: Archae - 99; Bacteria - 4060; Metazoa - 244; Fungi - 259; Plants - 155; Viruses - 0; Other Eukaryotes - 3403 (source: NCBI BLink).  protein_id AT1G10070.3p  transcript_id AT1G10070.3  protein_id AT1G10070.3p  transcript_id AT1G10070.3  
At1g10090	chr1:003294991	0.0	C/3294991-3295271,3294676-3294822,3294462-3294525,3294130-3294339,3293270-3293455,3292599-3292897,3292051-3292327,3291679-3291954,3290976-3291209,3290572-3290886	AT1G10090.1  CDS  gene_syn T27I1.11, T27I1_11  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G58520.1); Has 914 Blast hits to 823 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 448; Plants - 243; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT1G10090.1p  transcript_id AT1G10090.1  protein_id AT1G10090.1p  transcript_id AT1G10090.1  
At1g10095	chr1:003300271	0.0	C/3300271-3300353,3299838-3300176,3299633-3299743,3299360-3299450,3299054-3299122,3298745-3298822,3298489-3298572,3298340-3298390,3297756-3297992,3297478-3297597	AT1G10095.1  CDS  go_process protein amino acid prenylation|GO:0018346||IEA  go_function protein prenyltransferase activity|GO:0008318||IEA  go_component cellular_component|GO:0005575||ND  product protein prenyltransferase  note protein prenyltransferase; FUNCTIONS IN: protein prenyltransferase activity; INVOLVED IN: protein amino acid prenylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein prenyltransferase (InterPro:IPR008940), Protein prenyltransferase, alpha subunit (InterPro:IPR002088); BEST Arabidopsis thaliana protein match is: FTA (FARNESYLTRANSFERASE A); farnesyltranstransferase/ protein heterodimerization/ protein prenyltransferase (TAIR:AT3G59380.1); Has 657 Blast hits to 562 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 445; Fungi - 69; Plants - 74; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT1G10095.1p  transcript_id AT1G10095.1  protein_id AT1G10095.1p  transcript_id AT1G10095.1  
At1g10100	chr1:003301328	0.0	C/3301328-3301489,3301200-3301254,3300967-3301098,3300697-3300836	AT1G10100.1  CDS  gene_syn T27I1.17, T27I1_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10100.1p  transcript_id AT1G10100.1  protein_id AT1G10100.1p  transcript_id AT1G10100.1  
At1g10110	chr1:003302940	0.0	W/3302940-3303938	AT1G10110.1  CDS  gene_syn T27I1.14, T27I1_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G22060.1); Has 126 Blast hits to 124 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 126; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10110.1p  transcript_id AT1G10110.1  protein_id AT1G10110.1p  transcript_id AT1G10110.1  
At1g10120	chr1:003305511	0.0	C/3305511-3305984,3305219-3305410,3305051-3305116,3304897-3304965,3304727-3304798,3304515-3304634,3304341-3304425,3304228-3304250	AT1G10120.1  CDS  gene_syn T27I1.15, T27I1_15  go_component nucleus|GO:0005634|14617066|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product DNA binding / transcription factor  note DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT1G68920.2); Has 1348 Blast hits to 1348 proteins in 90 species: Archae - 0; Bacteria - 2; Metazoa - 53; Fungi - 14; Plants - 1271; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G10120.1p  transcript_id AT1G10120.1  protein_id AT1G10120.1p  transcript_id AT1G10120.1  
At1g10130	chr1:003311139	0.0	W/3311139-3311171,3311372-3311422,3311527-3311560,3311966-3311983,3312399-3312535,3312921-3312995,3313228-3313273,3313604-3313663,3313764-3313844,3314106-3314191,3314347-3314448,3314744-3314797,3315074-3315175,3315546-3315604,3315895-3316039,3316382-3316489,3316928-3317080,3317338-3317442,3317799-3317995,3318155-3318263,3318368-3318466,3318545-3318690,3318846-3318903,3319092-3319184,3319650-3319700,3319904-3320035,3320129-3320230,3320567-3320621,3320783-3320868,3320985-3321133,3321212-3321317,3321407-3321460,3321697-3321742,3321877-3321941	AT1G10130.1  CDS  gene_syn ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, ATECA3, ECA3, ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3, T27I1.16, T27I1_16  gene ECA3  function Encodes a golgi localized P2A-type Ca2+ ATPase involved in Mn nutrition and homeostasis.  go_component Golgi apparatus|GO:0005794|18024560|IDA  go_component endomembrane system|GO:0012505|18567829|IDA  go_process calcium ion transport|GO:0006816|10433975|ISS  go_process manganese ion transport|GO:0006828|18024560|IGI  go_process root development|GO:0048364|18567829|IMP  go_process manganese ion homeostasis|GO:0055071|18024560|IMP  go_function peroxidase activity|GO:0004601|18567829|IDA  go_function calcium-transporting ATPase activity|GO:0005388|10433975|ISS  go_function calcium-transporting ATPase activity|GO:0005388|12805592|ISS  go_function calcium-transporting ATPase activity|GO:0005388|18567829|IMP  go_function calcium-transporting ATPase activity|GO:0005388||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function manganese-transporting ATPase activity|GO:0015410|18567829|IMP  product ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3); calcium-transporting ATPase/ calmodulin binding / manganese-transporting ATPase/ peroxidase  note ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3 (ECA3); FUNCTIONS IN: manganese-transporting ATPase activity, peroxidase activity, calmodulin binding, calcium-transporting ATPase activity; INVOLVED IN: manganese ion transport, calcium ion transport, manganese ion homeostasis, root development; LOCATED IN: endomembrane system, Golgi apparatus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, calcium-transporting (InterPro:IPR005782), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068); BEST Arabidopsis thaliana protein match is: calcium-transporting ATPase (TAIR:AT1G07670.1); Has 28834 Blast hits to 19479 proteins in 1896 species: Archae - 661; Bacteria - 18088; Metazoa - 3638; Fungi - 1889; Plants - 1417; Viruses - 3; Other Eukaryotes - 3138 (source: NCBI BLink).  protein_id AT1G10130.1p  transcript_id AT1G10130.1  protein_id AT1G10130.1p  transcript_id AT1G10130.1  
At1g10140	chr1:003322970	0.0	C/3322970-3323473	AT1G10140.1  CDS  gene_syn F14N23.2, F14N23_2  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031279 (InterPro:IPR016972); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G58420.1); Has 38 Blast hits to 38 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G10140.1p  transcript_id AT1G10140.1  protein_id AT1G10140.1p  transcript_id AT1G10140.1  
At1g10150	chr1:003326160	0.0	W/3326160-3327404	AT1G10150.1  CDS  gene_syn ATPP2-A10, F14N23.3, F14N23_3, PHLOEM PROTEIN 2-A10  go_component mitochondrion|GO:0005739||IEA  go_function carbohydrate binding|GO:0030246|12529520|ISS  product carbohydrate binding  note carbohydrate binding; FUNCTIONS IN: carbohydrate binding; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: CF9 (TAIR:AT1G59510.1); Has 58 Blast hits to 58 proteins in 12 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G10150.1p  transcript_id AT1G10150.1  protein_id AT1G10150.1p  transcript_id AT1G10150.1  
At1g10155	chr1:003328386	0.0	C/3328386-3328448,3328171-3328262,3327637-3328036	AT1G10155.1  CDS  gene_syn ATPP2-A10, PHLOEM PROTEIN 2-A10  gene ATPP2-A10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ATPP2-A10 (PHLOEM PROTEIN 2-A10)  note PHLOEM PROTEIN 2-A10 (ATPP2-A10); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ATPP2-A9 (Phloem protein 2-A9); carbohydrate binding (TAIR:AT1G31200.1); Has 46 Blast hits to 46 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10155.1p  transcript_id AT1G10155.1  protein_id AT1G10155.1p  transcript_id AT1G10155.1  
At1g10160	chr1:003328971	0.0	W/3328971-3333470	AT1G10160.1  mRNA_TE_gene  pseudo  gene_syn F14N23.4, F14N23_4  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 3.9e-39 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)  
At1g10170	chr1:003333925	0.0	C/3333925-3337491	AT1G10170.1  CDS  gene_syn ARABIDOPSIS THALIANA NF-X-LIKE 1, ATNFXL1, F14N23.5, F14N23_5  gene ATNFXL1  function Encodes AtNFXL1, a homologue of the putative human transcription repressor NF-X1. Functions as a negative regulator of the trichothecene phytotoxin-induced defense response.  go_function transcription factor activity|GO:0003700||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634|16905136|IDA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to light intensity|GO:0009642|16905136|IMP  go_process response to salt stress|GO:0009651|16905136|IMP  go_process salicylic acid biosynthetic process|GO:0009697|18069941|IMP  go_process response to microbial phytotoxin|GO:0010188|18069941|IMP  go_process defense response to bacterium|GO:0042742|18069941|IMP  go_function transcription factor activity|GO:0003700||ISS  product ATNFXL1 (ARABIDOPSIS THALIANA NF-X-LIKE 1); protein binding / transcription factor/ zinc ion binding  note ARABIDOPSIS THALIANA NF-X-LIKE 1 (ATNFXL1); FUNCTIONS IN: protein binding, transcription factor activity, zinc ion binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NF-X1-type (InterPro:IPR000967), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965); BEST Arabidopsis thaliana protein match is: ATNFXL2; protein binding / transcription factor/ zinc ion binding (TAIR:AT5G05660.1); Has 5966 Blast hits to 3261 proteins in 191 species: Archae - 0; Bacteria - 76; Metazoa - 4504; Fungi - 396; Plants - 144; Viruses - 3; Other Eukaryotes - 843 (source: NCBI BLink).  protein_id AT1G10170.1p  transcript_id AT1G10170.1  protein_id AT1G10170.1p  transcript_id AT1G10170.1  
At1g10180	chr1:003341399	0.0	C/3341399-3341494,3341076-3341170,3339912-3340929,3339322-3339828,3339047-3339235,3338739-3338875,3338381-3338648	AT1G10180.1  CDS  gene_syn F14N23.6, F14N23_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49830.1); Has 70 Blast hits to 70 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G10180.1p  transcript_id AT1G10180.1  protein_id AT1G10180.1p  transcript_id AT1G10180.1  
At1g10190	chr1:003345430	0.0	C/3345430-3345591,3345242-3345334,3344923-3345141,3344676-3344828,3344472-3344525,3344236-3344379,3343765-3344130	AT1G10190.1  CDS  gene_syn F14N23.7, F14N23_7  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G15050.1); Has 372 Blast hits to 349 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 368; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10190.1p  transcript_id AT1G10190.1  protein_id AT1G10190.1p  transcript_id AT1G10190.1  
At1g10200	chr1:003347629	0.0	C/3347629-3347763,3347341-3347437,3347198-3347241,3347021-3347110,3346677-3346883	AT1G10200.1  CDS  gene_syn F14N23.8, F14N23_8, WLIM1  gene WLIM1  go_component plasma membrane|GO:0005886|17317660|IDA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function transcription factor activity|GO:0003700||ISS  product WLIM1; transcription factor/ zinc ion binding  note WLIM1; FUNCTIONS IN: transcription factor activity, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781); BEST Arabidopsis thaliana protein match is: LIM domain-containing protein (TAIR:AT2G39900.1); Has 3534 Blast hits to 2197 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 2928; Fungi - 23; Plants - 293; Viruses - 0; Other Eukaryotes - 290 (source: NCBI BLink).  protein_id AT1G10200.1p  transcript_id AT1G10200.1  protein_id AT1G10200.1p  transcript_id AT1G10200.1  
At1g10210	chr1:003349579	0.0	W/3349579-3350001,3350087-3350776	AT1G10210.1  CDS  gene_syn ATMPK1, F14N23.9, F14N23_9, MITOGEN-ACTIVATED PROTEIN KINASE, MITOGEN-ACTIVATED PROTEIN KINASE 1, MPK1  gene ATMPK1  function Encodes ATMPK1.  go_process signal transduction|GO:0007165|12119167|IC  go_process auxin mediated signaling pathway|GO:0009734|8130795|TAS  go_function MAP kinase activity|GO:0004707|12119167|ISS  go_function MAP kinase activity|GO:0004707|8130795|IDA  go_function kinase activity|GO:0016301||ISS  product ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1); MAP kinase/ kinase  note MITOGEN-ACTIVATED PROTEIN KINASE 1 (ATMPK1); FUNCTIONS IN: MAP kinase activity, kinase activity; INVOLVED IN: auxin mediated signaling pathway, signal transduction; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2); MAP kinase/ kinase/ protein kinase (TAIR:AT1G59580.2); Has 88207 Blast hits to 87041 proteins in 3132 species: Archae - 41; Bacteria - 6651; Metazoa - 39210; Fungi - 8049; Plants - 16856; Viruses - 441; Other Eukaryotes - 16959 (source: NCBI BLink).  protein_id AT1G10210.1p  transcript_id AT1G10210.1  protein_id AT1G10210.1p  transcript_id AT1G10210.1  
At1g10210	chr1:003349579	0.0	W/3349579-3350001,3350087-3350776	AT1G10210.2  CDS  gene_syn ATMPK1, F14N23.9, F14N23_9, MITOGEN-ACTIVATED PROTEIN KINASE, MITOGEN-ACTIVATED PROTEIN KINASE 1, MPK1  gene ATMPK1  function Encodes ATMPK1.  go_process signal transduction|GO:0007165|12119167|IC  go_process auxin mediated signaling pathway|GO:0009734|8130795|TAS  go_function MAP kinase activity|GO:0004707|12119167|ISS  go_function MAP kinase activity|GO:0004707|8130795|IDA  go_function kinase activity|GO:0016301||ISS  product ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1); MAP kinase/ kinase  note MITOGEN-ACTIVATED PROTEIN KINASE 1 (ATMPK1); FUNCTIONS IN: MAP kinase activity, kinase activity; INVOLVED IN: auxin mediated signaling pathway, signal transduction; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2); MAP kinase/ kinase/ protein kinase (TAIR:AT1G59580.2); Has 88207 Blast hits to 87041 proteins in 3132 species: Archae - 41; Bacteria - 6651; Metazoa - 39210; Fungi - 8049; Plants - 16856; Viruses - 441; Other Eukaryotes - 16959 (source: NCBI BLink).  protein_id AT1G10210.2p  transcript_id AT1G10210.2  protein_id AT1G10210.2p  transcript_id AT1G10210.2  
At1g10220	chr1:003352159	0.0	W/3352159-3352632,3354361-3354690	AT1G10220.1  CDS  gene_syn F14N23.10, F14N23_10  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: ZCF37 (TAIR:AT1G59590.1); Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 6; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G10220.1p  transcript_id AT1G10220.1  protein_id AT1G10220.1p  transcript_id AT1G10220.1  
At1g10220	chr1:003354364	0.0	W/3354364-3354690	AT1G10220.2  CDS  gene_syn F14N23.10, F14N23_10  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown.  protein_id AT1G10220.2p  transcript_id AT1G10220.2  protein_id AT1G10220.2p  transcript_id AT1G10220.2  
At1g10230	chr1:003355600	0.0	W/3355600-3356151	AT1G10230.1  CDS  gene_syn ARABIDOPSIS SKP1-LIKE 18, ASK18, F14N23.11, F14N23_11  gene ASK18  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|14749489|IPI  product ASK18 (ARABIDOPSIS SKP1-LIKE 18); protein binding / ubiquitin-protein ligase  note ARABIDOPSIS SKP1-LIKE 18 (ASK18); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: ASK15 (ARABIDOPSIS SKP1-LIKE 15); protein binding / ubiquitin-protein ligase (TAIR:AT3G25650.1); Has 1086 Blast hits to 1084 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 473; Fungi - 107; Plants - 362; Viruses - 11; Other Eukaryotes - 133 (source: NCBI BLink).  protein_id AT1G10230.1p  transcript_id AT1G10230.1  protein_id AT1G10230.1p  transcript_id AT1G10230.1  
At1g10240	chr1:003358294	0.0	C/3358294-3359271,3357651-3358094,3356835-3357455	AT1G10240.1  CDS  gene_syn F14N23.12, F14N23_12, FAR1-related sequence 11, FRS11  gene FRS11  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process response to red or far red light|GO:0009639||ISS  product FRS11 (FAR1-related sequence 11); zinc ion binding  note FAR1-related sequence 11 (FRS11); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FRS10 (FAR1-related sequence 10); zinc ion binding (TAIR:AT5G28530.1); Has 770 Blast hits to 690 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 74; Plants - 691; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G10240.1p  transcript_id AT1G10240.1  protein_id AT1G10240.1p  transcript_id AT1G10240.1  
At1g10250	chr1:003360325	0.0	C/3360325-3360462,3360137-3360232	AT1G10250.1  CDS  gene_syn F14N23.13, F14N23_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: SNL6 (SIN3-LIKE 6) (TAIR:AT1G10450.1); Has 222 Blast hits to 222 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 152; Fungi - 19; Plants - 43; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G10250.1p  transcript_id AT1G10250.1  protein_id AT1G10250.1p  transcript_id AT1G10250.1  
At1g10260	chr1:003360526	0.0	C/3360526-3361247	AT1G10260.1  mRNA_TE_gene  pseudo  gene_syn F14N23.14, F14N23_14  note Transposable element gene, copia-like retrotransposon family, has a 3.6e-19 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At1g10270	chr1:003363535	0.0	W/3363535-3366276	AT1G10270.1  CDS  gene_syn F14N23.15, F14N23_15, GLUTAMINE-RICH PROTEIN23, GRP23  gene GRP23  go_function binding|GO:0005488||IEA  go_component nucleus|GO:0005634|16489121|IDA  go_process embryonic development|GO:0009790|16489121|IMP  go_process cell division|GO:0051301|16489121|IMP  product GRP23 (GLUTAMINE-RICH PROTEIN23); binding  note GLUTAMINE-RICH PROTEIN23 (GRP23); FUNCTIONS IN: binding; INVOLVED IN: embryonic development, cell division; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: emb1796 (embryo defective 1796); ATP binding (TAIR:AT3G49240.1); Has 29136 Blast hits to 12633 proteins in 643 species: Archae - 23; Bacteria - 1240; Metazoa - 6890; Fungi - 2367; Plants - 11880; Viruses - 167; Other Eukaryotes - 6569 (source: NCBI BLink).  protein_id AT1G10270.1p  transcript_id AT1G10270.1  protein_id AT1G10270.1p  transcript_id AT1G10270.1  
At1g10280	chr1:003368143	0.0	C/3368143-3368739,3366795-3367436	AT1G10280.1  CDS  gene_syn F14N23.16, F14N23_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF266, plant (InterPro:IPR004949); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G21310.1); Has 332 Blast hits to 332 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 306; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G10280.1p  transcript_id AT1G10280.1  protein_id AT1G10280.1p  transcript_id AT1G10280.1  
At1g10290	chr1:003370774	0.0	W/3370774-3370914,3371198-3371248,3371345-3371465,3371595-3371687,3372032-3372093,3372264-3372381,3372528-3372864,3372970-3373117,3373444-3373545,3373626-3373745,3374013-3374096,3374181-3374308,3374412-3374496,3374614-3374752,3374978-3375054,3375125-3375181,3375464-3375608,3375696-3375835,3376175-3376288,3376402-3376469,3376553-3376725,3376879-3377120	AT1G10290.1  CDS  gene_syn ADL6, DRP2A, DYNAMIN-LIKE PROTEIN 6, DYNAMIN-RELATED PROTEIN 2A, F14N23.17, F14N23_17  gene ADL6  function involved in trafficking from the trans-Golgi Network to the central vacuole.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component Golgi apparatus|GO:0005794|11449048|IDA  go_process Golgi to vacuole transport|GO:0006896|11449048|IMP  go_function GTPase activity|GO:0003924|11449048|ISS  product ADL6 (DYNAMIN-LIKE PROTEIN 6); GTPase  note DYNAMIN-LIKE PROTEIN 6 (ADL6); FUNCTIONS IN: GTPase activity; INVOLVED IN: Golgi to vacuole transport; LOCATED IN: Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130), Pleckstrin homology-type (InterPro:IPR011993), Dynamin, GTPase region (InterPro:IPR001401), Dynamin central region (InterPro:IPR000375), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: ADL3 (ARABIDOPSIS DYNAMIN-LIKE 3); GTPase (TAIR:AT1G59610.1); Has 2422 Blast hits to 2318 proteins in 255 species: Archae - 4; Bacteria - 61; Metazoa - 1270; Fungi - 444; Plants - 392; Viruses - 0; Other Eukaryotes - 251 (source: NCBI BLink).  protein_id AT1G10290.1p  transcript_id AT1G10290.1  protein_id AT1G10290.1p  transcript_id AT1G10290.1  
At1g10300	chr1:003378142	0.0	W/3378142-3379248,3379270-3380226	AT1G10300.1  CDS  gene_syn F14N23.18, F14N23_18  go_function GTP binding|GO:0005525||IEA  product GTP-binding protein-related  note GTP-binding protein-related; FUNCTIONS IN: GTP binding; EXPRESSED IN: carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073), Nucleolar GTP-binding 1 (InterPro:IPR010674), NOG, C-terminal (InterPro:IPR012973); BEST Arabidopsis thaliana protein match is: GTP-binding protein-related (TAIR:AT1G50920.1); Has 5765 Blast hits to 5592 proteins in 1148 species: Archae - 218; Bacteria - 2528; Metazoa - 822; Fungi - 262; Plants - 128; Viruses - 2; Other Eukaryotes - 1805 (source: NCBI BLink).  protein_id AT1G10300.1p  transcript_id AT1G10300.1  protein_id AT1G10300.1p  transcript_id AT1G10300.1  
At1g10310	chr1:003383653	0.0	C/3383653-3383874,3383282-3383351,3382683-3382876,3382025-3382197,3381733-3381802	AT1G10310.1  CDS  gene_syn F14N23.19, F14N23_19  function encodes a NADPH-dependent pterin aldehyde reductase that accepts pterin aldehyde as well as dihydropterin aldehyde as substrates involved in metabolism and salvage of folate and its derivatives.  go_component cytosol|GO:0005829|17550420|IDA  go_process folic acid and derivative metabolic process|GO:0006760|17550420|IDA  go_function oxidoreductase activity|GO:0016491||ISS  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616|17550420|IDA  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; INVOLVED IN: folic acid and derivative metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT3G55290.2); Has 77377 Blast hits to 77226 proteins in 2224 species: Archae - 444; Bacteria - 43755; Metazoa - 6064; Fungi - 3987; Plants - 1646; Viruses - 2; Other Eukaryotes - 21479 (source: NCBI BLink).  protein_id AT1G10310.1p  transcript_id AT1G10310.1  protein_id AT1G10310.1p  transcript_id AT1G10310.1  
At1g10320	chr1:003387969	0.0	C/3387969-3388373,3387724-3387882,3387508-3387666,3387251-3387409,3386374-3386466,3385952-3386068,3385467-3385541,3385183-3385394,3384164-3385058	AT1G10320.1  CDS  gene_syn F14N23.20, F14N23_20  go_component nucleus|GO:0005634||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function RNA binding|GO:0003723||ISS  product U2 snRNP auxiliary factor-related  note U2 snRNP auxiliary factor-related; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, region 1 (InterPro:IPR003954), U2 auxiliary factor small subunit (InterPro:IPR009145); BEST Arabidopsis thaliana protein match is: U2AF35B; RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding (TAIR:AT5G42820.2); Has 96468 Blast hits to 37209 proteins in 1471 species: Archae - 214; Bacteria - 8322; Metazoa - 45541; Fungi - 8158; Plants - 3658; Viruses - 590; Other Eukaryotes - 29985 (source: NCBI BLink).  protein_id AT1G10320.1p  transcript_id AT1G10320.1  protein_id AT1G10320.1p  transcript_id AT1G10320.1  
At1g10330	chr1:003388747	0.0	W/3388747-3390150	AT1G10330.1  CDS  gene_syn F14N23.21, F14N23_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G66520.1); Has 11485 Blast hits to 4434 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 26; Plants - 11160; Viruses - 0; Other Eukaryotes - 237 (source: NCBI BLink).  protein_id AT1G10330.1p  transcript_id AT1G10330.1  protein_id AT1G10330.1p  transcript_id AT1G10330.1  
At1g10340	chr1:003392046	0.0	C/3392046-3392481,3391517-3391956,3390475-3391335	AT1G10340.1  CDS  gene_syn F14N23.22, F14N23_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT2G24600.3); Has 18692 Blast hits to 10007 proteins in 394 species: Archae - 19; Bacteria - 1110; Metazoa - 11135; Fungi - 977; Plants - 1495; Viruses - 133; Other Eukaryotes - 3823 (source: NCBI BLink).  protein_id AT1G10340.1p  transcript_id AT1G10340.1  protein_id AT1G10340.1p  transcript_id AT1G10340.1  
At1g10340	chr1:003392058	0.0	C/3392058-3392481,3391517-3391956,3390475-3391335	AT1G10340.2  CDS  gene_syn F14N23.22, F14N23_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT2G24600.3); Has 16783 Blast hits to 9155 proteins in 364 species: Archae - 12; Bacteria - 1021; Metazoa - 10033; Fungi - 808; Plants - 1480; Viruses - 97; Other Eukaryotes - 3332 (source: NCBI BLink).  protein_id AT1G10340.2p  transcript_id AT1G10340.2  protein_id AT1G10340.2p  transcript_id AT1G10340.2  
At1g10350	chr1:003394250	0.0	C/3394250-3394860,3393595-3394033	AT1G10350.1  CDS  gene_syn F14N23.23, F14N23_23  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock protein, putative  note DNAJ heat shock protein, putative; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock protein, putative (TAIR:AT1G59725.1); Has 19690 Blast hits to 19405 proteins in 2073 species: Archae - 113; Bacteria - 5759; Metazoa - 3795; Fungi - 1695; Plants - 1434; Viruses - 18; Other Eukaryotes - 6876 (source: NCBI BLink).  protein_id AT1G10350.1p  transcript_id AT1G10350.1  protein_id AT1G10350.1p  transcript_id AT1G10350.1  
At1g10360	chr1:003396486	0.0	C/3396486-3396806,3395738-3396100	AT1G10360.1  CDS  gene_syn ATGSTU18, F14N23.24, F14N23_24, GLUTATHIONE S-TRANSFERASE 29, GLUTATHIONE S-TRANSFERASE TAU 18, GST29  gene ATGSTU18  function Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTU18 (GLUTATHIONE S-TRANSFERASE TAU 18); glutathione transferase  note GLUTATHIONE S-TRANSFERASE TAU 18 (ATGSTU18); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9); glutathione transferase (TAIR:AT1G10370.1); Has 3218 Blast hits to 3215 proteins in 684 species: Archae - 0; Bacteria - 1545; Metazoa - 186; Fungi - 69; Plants - 1032; Viruses - 0; Other Eukaryotes - 386 (source: NCBI BLink).  protein_id AT1G10360.1p  transcript_id AT1G10360.1  protein_id AT1G10360.1p  transcript_id AT1G10360.1  
At1g10370	chr1:003397953	0.0	C/3397953-3398273,3397274-3397636	AT1G10370.1  CDS  gene_syn ATGSTU17, EARLY-RESPONSIVE TO DEHYDRATION 9, ERD9, F14N23.26, F14N23_26, GLUTATHIONE S-TRANSFERASE, GLUTATHIONE S-TRANSFERASE 30, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE TAU 17, GST30, GST30B  gene ERD9  go_component chloroplast|GO:0009507|18431481|IDA  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_process response to water deprivation|GO:0009414|8075396|IEP  go_function glutathione transferase activity|GO:0004364||ISS  product ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9); glutathione transferase  note EARLY-RESPONSIVE TO DEHYDRATION 9 (ERD9); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: response to water deprivation, toxin catabolic process; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTU18 (GLUTATHIONE S-TRANSFERASE TAU 18); glutathione transferase (TAIR:AT1G10360.1); Has 3306 Blast hits to 3303 proteins in 662 species: Archae - 0; Bacteria - 1571; Metazoa - 184; Fungi - 70; Plants - 1070; Viruses - 0; Other Eukaryotes - 411 (source: NCBI BLink).  protein_id AT1G10370.1p  transcript_id AT1G10370.1  protein_id AT1G10370.1p  transcript_id AT1G10370.1  
At1g10380	chr1:003400706	0.0	W/3400706-3401196,3401481-3401845,3402049-3402110	AT1G10380.1  CDS  gene_syn F14N23.27  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17350.1); Has 148 Blast hits to 147 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10380.1p  transcript_id AT1G10380.1  protein_id AT1G10380.1p  transcript_id AT1G10380.1  
At1g10385	chr1:003403224	0.0	W/3403224-3403382,3403487-3403584,3403678-3404713,3404801-3405627,3405712-3405856	AT1G10385.1  CDS  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Vps51/Vps67 (InterPro:IPR014812); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49830.1); Has 304 Blast hits to 243 proteins in 98 species: Archae - 0; Bacteria - 22; Metazoa - 141; Fungi - 74; Plants - 62; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G10385.1p  transcript_id AT1G10385.1  protein_id AT1G10385.1p  transcript_id AT1G10385.1  
At1g10390	chr1:003412027	0.0	C/3412027-3412045,3411596-3411889,3410768-3411415,3410425-3410652,3409691-3410325,3409426-3409513,3409289-3409349,3409033-3409171,3408697-3408813,3408415-3408589,3408031-3408072,3407265-3407944	AT1G10390.1  CDS  gene_syn F14N23.29, F14N23_29  go_component nuclear pore|GO:0005643||IEA  go_component chloroplast|GO:0009507||IEA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||ISS  product nucleoporin family protein  note nucleoporin family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, nuclear pore; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S59, nucleoporin (InterPro:IPR007230); BEST Arabidopsis thaliana protein match is: nucleoporin family protein (TAIR:AT1G59660.1); Has 64864 Blast hits to 25574 proteins in 1296 species: Archae - 105; Bacteria - 15037; Metazoa - 20267; Fungi - 10858; Plants - 3281; Viruses - 699; Other Eukaryotes - 14617 (source: NCBI BLink).  protein_id AT1G10390.1p  transcript_id AT1G10390.1  protein_id AT1G10390.1p  transcript_id AT1G10390.1  
At1g10390	chr1:003412027	0.0	C/3412027-3412045,3411596-3411889,3410768-3411415,3410425-3410652,3409691-3410325,3409426-3409513,3409289-3409349,3409033-3409171,3408697-3408813,3408415-3408589,3408031-3408072,3407265-3407944	AT1G10390.2  CDS  gene_syn F14N23.29, F14N23_29  go_component nuclear pore|GO:0005643||IEA  go_component chloroplast|GO:0009507||IEA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||ISS  product nucleoporin family protein  note nucleoporin family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, nuclear pore; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S59, nucleoporin (InterPro:IPR007230); BEST Arabidopsis thaliana protein match is: nucleoporin family protein (TAIR:AT1G59660.1); Has 64864 Blast hits to 25574 proteins in 1296 species: Archae - 105; Bacteria - 15037; Metazoa - 20267; Fungi - 10858; Plants - 3281; Viruses - 699; Other Eukaryotes - 14617 (source: NCBI BLink).  protein_id AT1G10390.2p  transcript_id AT1G10390.2  protein_id AT1G10390.2p  transcript_id AT1G10390.2  
At1g10400	chr1:003415595	0.0	C/3415595-3416358,3414869-3415508	AT1G10400.1  CDS  gene_syn F14N23.30, F14N23_30  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glycosyltransferase/ transferase, transferring glycosyl groups  note UDP-glycosyltransferase/ transferase, transferring glycosyl groups; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213), Tudor subgroup (InterPro:IPR018351); BEST Arabidopsis thaliana protein match is: transferase, transferring glycosyl groups (TAIR:AT5G14860.1); Has 4255 Blast hits to 4211 proteins in 294 species: Archae - 0; Bacteria - 69; Metazoa - 1364; Fungi - 10; Plants - 2711; Viruses - 78; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G10400.1p  transcript_id AT1G10400.1  protein_id AT1G10400.1p  transcript_id AT1G10400.1  
At1g10410	chr1:003419078	0.0	C/3419078-3419264,3418652-3418732,3418216-3418557,3417993-3418128,3417737-3417899,3417520-3417648,3417238-3417432,3417026-3417148,3416842-3416943	AT1G10410.1  CDS  gene_syn F14N23.31, F14N23_31  go_component chloroplast|GO:0009507||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  product unknown protein  note INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769); BEST Arabidopsis thaliana protein match is: CW14 (TAIR:AT1G59650.1); Has 144 Blast hits to 144 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 2; Plants - 115; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G10410.1p  transcript_id AT1G10410.1  protein_id AT1G10410.1p  transcript_id AT1G10410.1  
At1g10417	chr1:003427215	0.0	C/3427215-3427457,3427037-3427135,3426854-3426964,3426547-3426721,3426380-3426436,3426075-3426211,3425922-3425981,3425769-3425846,3425573-3425640,3425307-3425380,3424899-3425066,3424616-3424641	AT1G10417.1  CDS  function Encodes protein with unknown function whose expression is repressed by inoculation with Agrobacterium tumerifaciens.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: CIP1 (COP1-INTERACTIVE PROTEIN 1); protein binding (TAIR:AT5G41790.1); Has 58 Blast hits to 58 proteins in 24 species: Archae - 2; Bacteria - 4; Metazoa - 21; Fungi - 5; Plants - 7; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT1G10417.1p  transcript_id AT1G10417.1  protein_id AT1G10417.1p  transcript_id AT1G10417.1  
At1g10419	chr1:003428031	0.0	W/3428031-3428425	AT1G10419.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G10419  
At1g10430	chr1:003430185	0.0	C/3430185-3430437,3429714-3429828,3429486-3429594,3429329-3429406,3428953-3429144,3428705-3428878	AT1G10430.1  CDS  gene_syn PP2A-2, PROTEIN PHOSPHATASE 2A, PROTEIN PHOSPHATASE 2A-2, T10O24.4, T10O24_4  gene PP2A-2  function Encodes one of two isoforms of the catalytic subunit of protein phosphatase 2A.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component nucleus|GO:0005634|15469496|IDA  go_component cytoplasm|GO:0005737|15469496|IDA  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722|8382968|ISS  product PP2A-2; protein serine/threonine phosphatase  note PP2A-2; FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: PP2A-1; protein serine/threonine phosphatase (TAIR:AT1G59830.1); Has 5264 Blast hits to 5140 proteins in 350 species: Archae - 49; Bacteria - 113; Metazoa - 2047; Fungi - 931; Plants - 602; Viruses - 5; Other Eukaryotes - 1517 (source: NCBI BLink).  protein_id AT1G10430.1p  transcript_id AT1G10430.1  protein_id AT1G10430.1p  transcript_id AT1G10430.1  
At1g10440	chr1:003431185	0.0	C/3431185-3431256	AT1G10440.1  tRNA  gene_syn 51200.TRNA-PRO-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: AGG)  transcript_id AT1G10440.1  
At1g10450	chr1:003432160	0.0	W/3432160-3432386,3432541-3432663,3432779-3432959,3433047-3433145,3433260-3433403,3433619-3433709,3433947-3434170,3434266-3434420,3434672-3434799,3434892-3435146,3435368-3435867,3436058-3436651,3436743-3436831,3436908-3437046,3437151-3437303,3437381-3437541,3437621-3437732,3437833-3437979	AT1G10450.1  CDS  gene_syn SIN3-LIKE 6, SNL6, T10O24.5, T10O24_5  gene SNL6  function Encodes SIN3-like 6, a homolog of the transcriptional repressor SIN3 (AT1G24190).  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  product SNL6 (SIN3-LIKE 6)  note SIN3-LIKE 6 (SNL6); INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SNL5 (SIN3-LIKE 5) (TAIR:AT1G59890.1); Has 1728 Blast hits to 713 proteins in 151 species: Archae - 0; Bacteria - 19; Metazoa - 790; Fungi - 466; Plants - 223; Viruses - 2; Other Eukaryotes - 228 (source: NCBI BLink).  protein_id AT1G10450.1p  transcript_id AT1G10450.1  protein_id AT1G10450.1p  transcript_id AT1G10450.1  
At1g10455	chr1:003438555	0.0	W/3438555-3439013	AT1G10455.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51970.1); Has 30 Blast hits to 28 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10455.1p  transcript_id AT1G10455.1  protein_id AT1G10455.1p  transcript_id AT1G10455.1  
At1g10460	chr1:003439578	0.0	C/3439578-3440231	AT1G10460.1  CDS  gene_syn GERMIN-LIKE PROTEIN 7, GLP7, T10O24.6  gene GLP7  function germin-like protein (GLP7)  go_component apoplast|GO:0048046||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process biological_process|GO:0008150||ND  product GLP7 (GERMIN-LIKE PROTEIN 7); manganese ion binding / nutrient reservoir  note GERMIN-LIKE PROTEIN 7 (GLP7); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast; EXPRESSED IN: inflorescence meristem, hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), Germin (InterPro:IPR001929), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: germin-like protein, putative (TAIR:AT5G38960.1); Has 859 Blast hits to 858 proteins in 84 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 32; Plants - 806; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G10460.1p  transcript_id AT1G10460.1  protein_id AT1G10460.1p  transcript_id AT1G10460.1  
At1g10470	chr1:003443582	0.0	C/3443582-3443759,3443417-3443493,3443252-3443329,3443099-3443169,3442624-3442999	AT1G10470.1  CDS  gene_syn ARR4, ATRR1, IBC7, INDUCED BY CYTOKININ 7, MEE7, RESPONCE REGULATOR 1, RESPONSE REGULATOR 4, T10O24.8, T10O24_8, maternal effect embryo arrest 7  gene ARR4  function Encodes a two-component response regulator. Acts redundantly with ARR3 in the control of circadian period in a cytokinin-independent manner.  go_component nucleus|GO:0005634|11691995|IDA  go_component nucleus|GO:0005634|18642946|IDA  go_component cytoplasm|GO:0005737|11691995|IDA  go_component cytoplasm|GO:0005737|18642946|IDA  go_process response to stress|GO:0006950|9607306|TAS  go_process circadian rhythm|GO:0007623|16326927|IMP  go_process response to cytokinin stimulus|GO:0009735|16407152|IEP  go_process response to cytokinin stimulus|GO:0009735|9634588|IEP  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_process cytokinin mediated signaling|GO:0009736|18065689|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process red or far red light signaling pathway|GO:0010017|11691995|IMP  go_process response to red light|GO:0010114|14973166|IMP  go_process regulation of circadian rhythm|GO:0042752|16326927|IGI  go_function two-component response regulator activity|GO:0000156|12068096|ISS  go_function two-component response regulator activity|GO:0000156|9607306|TAS  go_function two-component response regulator activity|GO:0000156||ISS  go_function protein binding|GO:0005515|11691995|IPI  go_function transcription regulator activity|GO:0030528|12068096|TAS  product ARR4 (RESPONSE REGULATOR 4); protein binding / transcription regulator/ two-component response regulator  note RESPONSE REGULATOR 4 (ARR4); FUNCTIONS IN: protein binding, transcription regulator activity, two-component response regulator activity; INVOLVED IN: in 8 processes; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver region (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: ARR3 (RESPONSE REGULATOR 3); transcription regulator/ two-component response regulator (TAIR:AT1G59940.1); Has 34704 Blast hits to 34217 proteins in 1583 species: Archae - 191; Bacteria - 28777; Metazoa - 34; Fungi - 412; Plants - 741; Viruses - 7; Other Eukaryotes - 4542 (source: NCBI BLink).  protein_id AT1G10470.1p  transcript_id AT1G10470.1  protein_id AT1G10470.1p  transcript_id AT1G10470.1  
At1g10480	chr1:003449734	0.0	W/3449734-3450369	AT1G10480.1  CDS  gene_syn T10O24.9, T10O24_9, ZFP5, ZINC FINGER PROTEIN 5  gene ZFP5  function Encodes a zinc finger protein containing only a single zinc finger.  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product ZFP5 (ZINC FINGER PROTEIN 5); nucleic acid binding / transcription factor/ zinc ion binding  note ZINC FINGER PROTEIN 5 (ZFP5); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: inflorescence meristem, hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: ZFP6 (ZINC FINGER PROTEIN 6); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT1G67030.1); Has 338 Blast hits to 338 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 333; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10480.1p  transcript_id AT1G10480.1  protein_id AT1G10480.1p  transcript_id AT1G10480.1  
At1g10490	chr1:003453589	0.0	W/3453589-3453693,3453782-3453873,3454113-3454284,3454366-3454488,3454568-3454741,3454854-3454964,3455044-3455177,3455263-3455356,3455555-3455653,3455738-3455874,3455997-3456094,3456583-3456706,3456801-3456888,3456969-3457068,3457148-3457200,3457424-3457600,3457684-3457721,3457789-3457882,3457960-3458139,3458233-3458347,3458444-3458513,3458643-3458790,3458988-3459116,3459247-3459372,3459526-3459591,3459686-3459925	AT1G10490.1  CDS  gene_syn T10O24.10, T10O24_10  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1726 (InterPro:IPR013562), Protein of unknown function DUF699, ATPase putative (InterPro:IPR007807); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57940.1); Has 887 Blast hits to 850 proteins in 389 species: Archae - 76; Bacteria - 411; Metazoa - 160; Fungi - 89; Plants - 21; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink).  protein_id AT1G10490.1p  transcript_id AT1G10490.1  protein_id AT1G10490.1p  transcript_id AT1G10490.1  
At1g10500	chr1:003461160	0.0	C/3461160-3461340,3460690-3460908,3460160-3460302	AT1G10500.1  CDS  gene_syn ATCPISCA, T10O24.11, T10O24_11, chloroplast-localized IscA-like protein  gene ATCPISCA  function Involved in chloroplast Fe-S cluster assembly. Located in the chloroplast stroma. Expressed preferentially in green tissues.  go_component chloroplast stroma|GO:0009570|15888686|IDA  go_process iron-sulfur cluster assembly|GO:0016226|15888686|IDA  go_function structural molecule activity|GO:0005198|15888686|IDA  product ATCPISCA (chloroplast-localized IscA-like protein); structural molecule  note chloroplast-localized IscA-like protein (ATCPISCA); FUNCTIONS IN: structural molecule activity; INVOLVED IN: iron-sulfur cluster assembly; LOCATED IN: chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FeS cluster insertion, C-terminal, conserved site (InterPro:IPR017870), FeS cluster biogenesis (InterPro:IPR000361), FeS cluster insertion (InterPro:IPR016092); BEST Arabidopsis thaliana protein match is: hesB-like domain-containing protein (TAIR:AT5G03905.1); Has 7722 Blast hits to 7721 proteins in 1111 species: Archae - 25; Bacteria - 3549; Metazoa - 199; Fungi - 150; Plants - 92; Viruses - 0; Other Eukaryotes - 3707 (source: NCBI BLink).  protein_id AT1G10500.1p  transcript_id AT1G10500.1  protein_id AT1G10500.1p  transcript_id AT1G10500.1  
At1g10510	chr1:003461771	0.0	W/3461771-3461818,3461902-3462175,3462395-3462607,3462743-3462801,3462903-3463040,3463238-3463312,3463420-3463503,3463614-3463675,3463781-3463850,3464037-3464112,3464210-3464340,3464458-3464517,3464609-3464683,3464773-3464877,3464977-3465072,3465168-3465248,3465340-3465441,3465522-3465590	AT1G10510.1  CDS  gene_syn T10O24.12, T10O24_12, emb2004, embryo defective 2004  gene emb2004  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product emb2004 (embryo defective 2004)  note embryo defective 2004 (emb2004); INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1); RAN GTPase activator/ protein binding (TAIR:AT3G63130.1); Has 17671 Blast hits to 5431 proteins in 235 species: Archae - 0; Bacteria - 744; Metazoa - 8658; Fungi - 337; Plants - 531; Viruses - 0; Other Eukaryotes - 7401 (source: NCBI BLink).  protein_id AT1G10510.1p  transcript_id AT1G10510.1  protein_id AT1G10510.1p  transcript_id AT1G10510.1  
At1g10520	chr1:003465964	0.0	W/3465964-3466074,3466197-3466337,3466532-3466849,3466996-3467074,3467154-3467284,3467439-3467501,3467701-3467880,3467973-3468026,3468110-3468198,3468287-3468377,3468568-3468648,3468799-3468866,3468967-3469051,3469150-3469248	AT1G10520.1  CDS  gene_syn T10O24.13, T10O24_13  go_component intracellular|GO:0005622||IEA  go_process DNA replication|GO:0006260||IEA  go_process DNA repair|GO:0006281||IEA  go_function DNA binding|GO:0003677||IEA  go_function catalytic activity|GO:0003824||IEA  go_function DNA-directed DNA polymerase activity|GO:0003887||IEA  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_function DNA-directed DNA polymerase activity|GO:0003887||ISS  product DNA polymerase lambda (POLL)  note DNA polymerase lambda (POLL); FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity, catalytic activity, nucleotidyltransferase activity; INVOLVED IN: DNA repair, DNA replication; LOCATED IN: intracellular; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Nucleotidyltransferase (InterPro:IPR002934), DNA-directed DNA polymerase, family X, beta-like (InterPro:IPR002008), DNA-directed DNA polymerase, family X, beta-like, N-terminal (InterPro:IPR010996), DNA-directed DNA polymerase, family X (InterPro:IPR002054), BRCT (InterPro:IPR001357); Has 1319 Blast hits to 1315 proteins in 297 species: Archae - 26; Bacteria - 320; Metazoa - 481; Fungi - 134; Plants - 17; Viruses - 7; Other Eukaryotes - 334 (source: NCBI BLink).  protein_id AT1G10520.1p  transcript_id AT1G10520.1  protein_id AT1G10520.1p  transcript_id AT1G10520.1  
At1g10522	chr1:003470009	0.0	W/3470009-3470263,3470340-3470435,3471103-3471291	AT1G10522.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 14 Blast hits to 14 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10522.1p  transcript_id AT1G10522.1  protein_id AT1G10522.1p  transcript_id AT1G10522.1  
At1g10522	chr1:003470009	0.0	W/3470009-3470263,3470340-3470435,3471103-3471291	AT1G10522.2  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 14 Blast hits to 14 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10522.2p  transcript_id AT1G10522.2  protein_id AT1G10522.2p  transcript_id AT1G10522.2  
At1g10530	chr1:003472235	0.0	C/3472235-3472526,3472047-3472147,3471805-3471912	AT1G10530.1  CDS  gene_syn T10O24.15, T10O24_15  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G60010.1); Has 75 Blast hits to 75 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10530.1p  transcript_id AT1G10530.1  protein_id AT1G10530.1p  transcript_id AT1G10530.1  
At1g10538	chr1:003474515	0.0	W/3474515-3474765	AT1G10538.1  pseudogenic_transcript  pseudo  function pseudogene of CPL4 (phosphoprotein phosphatase)  
At1g10540	chr1:003477636	0.0	C/3477636-3477756,3477447-3477544,3477188-3477364,3476987-3477087,3476821-3476896,3476692-3476751,3476424-3476614,3476258-3476357,3476081-3476167,3475941-3475999,3475737-3475828,3475578-3475655,3475318-3475478,3475024-3475242	AT1G10540.1  CDS  gene_syn T10O24.16, T10O24_16  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_function transmembrane transporter activity|GO:0022857||ISS  product xanthine/uracil permease family protein  note xanthine/uracil permease family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Xanthine/uracil permease (InterPro:IPR006042), Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: xanthine/uracil permease family protein (TAIR:AT1G60030.1); Has 4911 Blast hits to 4895 proteins in 928 species: Archae - 37; Bacteria - 3513; Metazoa - 307; Fungi - 90; Plants - 294; Viruses - 1; Other Eukaryotes - 669 (source: NCBI BLink).  protein_id AT1G10540.1p  transcript_id AT1G10540.1  protein_id AT1G10540.1p  transcript_id AT1G10540.1  
At1g10550	chr1:003480744	0.0	C/3480744-3480957,3480490-3480590,3480157-3480365,3479257-3479665	AT1G10550.1  CDS  gene_syn T10O24.17, T10O24_17, XET, XTH33, XYLOGLUCAN ENDOTRANSGLYCOSYLASE, XYLOGLUCAN:XYLOGLUCOSYL TRANSFERASE 33  gene XTH33  function Encodes a membrane-localized protein that is predicted to function during cell wall modification.Overexpression of XTH33 results in abnormal cell morphology. It s expression is under epigenetic control by ATX1.  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762||IEA  go_component integral to plasma membrane|GO:0005887|19154201|IDA  go_process plant-type cell wall modification during multidimensional cell growth|GO:0009831|19154201|IMP  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product XTH33; hydrolase, acting on glycosyl bonds / hydrolase, hydrolyzing O-glycosyl compounds / xyloglucan:xyloglucosyl transferase  note XTH33; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: plant-type cell wall modification during multidimensional cell growth; LOCATED IN: integral to plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: EXGT-A3; hydrolase, acting on glycosyl bonds / xyloglucan:xyloglucosyl transferase (TAIR:AT2G01850.1); Has 1279 Blast hits to 1273 proteins in 199 species: Archae - 0; Bacteria - 182; Metazoa - 0; Fungi - 236; Plants - 794; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT1G10550.1p  transcript_id AT1G10550.1  protein_id AT1G10550.1p  transcript_id AT1G10550.1  
At1g10560	chr1:003484613	0.0	W/3484613-3486706	AT1G10560.1  CDS  gene_syn ARABIDOPSIS THALIANA PLANT U-BOX 18, ATPUB18, PLANT U-BOX 18, PUB18, T10O24.19, T10O24_19  gene PUB18  function Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein ubiquitination|GO:0016567|14657406|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|14657406|IDA  product PUB18 (PLANT U-BOX 18); ubiquitin-protein ligase  note PLANT U-BOX 18 (PUB18); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein / U-box domain-containing protein (TAIR:AT1G60190.1); Has 1797 Blast hits to 1627 proteins in 163 species: Archae - 0; Bacteria - 20; Metazoa - 232; Fungi - 228; Plants - 1107; Viruses - 3; Other Eukaryotes - 207 (source: NCBI BLink).  protein_id AT1G10560.1p  transcript_id AT1G10560.1  protein_id AT1G10560.1p  transcript_id AT1G10560.1  
At1g10570	chr1:003487639	0.0	W/3487639-3487974,3488329-3488377,3488457-3488569,3488644-3488945,3489075-3489123,3489203-3489288,3489377-3489406,3489485-3489589,3489674-3489776,3490055-3490152,3490368-3490490,3490610-3490721,3490807-3490914,3491001-3491102	AT1G10570.1  CDS  gene_syn OTS2, OVERLY TOLERANT TO SALT 2, T10O24.20, T10O24_20, UB-LIKE PROTEASE 1C, ULP1C  gene OTS2  function Encodes a deSUMOylating enzyme. In vitro it has both peptidase activity and isopeptidase activity: it can cleave the C-terminal residues from SUMO to activate it for attachment to a target protein and it can also act on the isopeptide bond between SUMO and another protein. sYFP:OTS2 protein accumulates in nuclei in a punctate pattern. Double mutant analysis with ULP1D/OTS1 indicates that these genes are involved in salt stress responses and flowering time regulation.  go_component nucleus|GO:0005634|18849491|IDA  go_process proteolysis|GO:0006508||ISS  go_process response to salt stress|GO:0009651|18849491|IGI  go_process vegetative to reproductive phase transition|GO:0010228|18849491|IGI  go_process protein desumoylation|GO:0016926|16740136|IDA  go_function cysteine-type peptidase activity|GO:0008234||ISS  go_function SUMO-specific protease activity|GO:0016929|16740136|IDA  product OTS2 (OVERLY TOLERANT TO SALT 2); SUMO-specific protease/ cysteine-type peptidase  note OVERLY TOLERANT TO SALT 2 (OTS2); FUNCTIONS IN: cysteine-type peptidase activity, SUMO-specific protease activity; INVOLVED IN: response to salt stress, proteolysis, protein desumoylation, vegetative to reproductive phase transition; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: ULP1D (UB-LIKE PROTEASE 1D); SUMO-specific protease/ cysteine-type peptidase (TAIR:AT1G60220.1); Has 939 Blast hits to 928 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 547; Fungi - 162; Plants - 111; Viruses - 3; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT1G10570.1p  transcript_id AT1G10570.1  protein_id AT1G10570.1p  transcript_id AT1G10570.1  
At1g10570	chr1:003487639	0.0	W/3487639-3487974,3488332-3488377,3488457-3488569,3488644-3488945,3489075-3489123,3489203-3489288,3489377-3489406,3489485-3489589,3489674-3489776,3490055-3490152,3490368-3490490,3490610-3490721,3490807-3490914,3491001-3491102	AT1G10570.2  CDS  gene_syn OTS2, OVERLY TOLERANT TO SALT 2, T10O24.20, T10O24_20, UB-LIKE PROTEASE 1C, ULP1C  gene OTS2  function Encodes a deSUMOylating enzyme. In vitro it has both peptidase activity and isopeptidase activity: it can cleave the C-terminal residues from SUMO to activate it for attachment to a target protein and it can also act on the isopeptide bond between SUMO and another protein. sYFP:OTS2 protein accumulates in nuclei in a punctate pattern. Double mutant analysis with ULP1D/OTS1 indicates that these genes are involved in salt stress responses and flowering time regulation.  go_component nucleus|GO:0005634|18849491|IDA  go_process proteolysis|GO:0006508||ISS  go_process response to salt stress|GO:0009651|18849491|IGI  go_process vegetative to reproductive phase transition|GO:0010228|18849491|IGI  go_process protein desumoylation|GO:0016926|16740136|IDA  go_function cysteine-type peptidase activity|GO:0008234||ISS  go_function SUMO-specific protease activity|GO:0016929|16740136|IDA  product OTS2 (OVERLY TOLERANT TO SALT 2); SUMO-specific protease/ cysteine-type peptidase  note OVERLY TOLERANT TO SALT 2 (OTS2); FUNCTIONS IN: cysteine-type peptidase activity, SUMO-specific protease activity; INVOLVED IN: response to salt stress, proteolysis, protein desumoylation, vegetative to reproductive phase transition; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: ULP1D (UB-LIKE PROTEASE 1D); SUMO-specific protease/ cysteine-type peptidase (TAIR:AT1G60220.1); Has 936 Blast hits to 925 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 544; Fungi - 162; Plants - 111; Viruses - 3; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT1G10570.2p  transcript_id AT1G10570.2  protein_id AT1G10570.2p  transcript_id AT1G10570.2  
At1g10580	chr1:003491951	0.0	C/3491951-3493665,3491560-3491566	AT1G10580.1  CDS  gene_syn T10O24.21, T10O24_21  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein (TAIR:AT5G54520.1); Has 48476 Blast hits to 23700 proteins in 723 species: Archae - 63; Bacteria - 5525; Metazoa - 21675; Fungi - 8965; Plants - 4026; Viruses - 24; Other Eukaryotes - 8198 (source: NCBI BLink).  protein_id AT1G10580.1p  transcript_id AT1G10580.1  protein_id AT1G10580.1p  transcript_id AT1G10580.1  
At1g10585	chr1:003494967	0.0	C/3494967-3495104,3494296-3494613,3494115-3494204	AT1G10585.1  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: transcription regulator (TAIR:AT1G10586.1); Has 43 Blast hits to 43 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10585.1p  transcript_id AT1G10585.1  protein_id AT1G10585.1p  transcript_id AT1G10585.1  
At1g10586	chr1:003499259	0.0	C/3499259-3499396,3497338-3497655,3497131-3497199	AT1G10586.1  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription regulator activity|GO:0030528||IEA  product transcription regulator  note transcription regulator; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT1G10585.1); Has 46 Blast hits to 46 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10586.1p  transcript_id AT1G10586.1  protein_id AT1G10586.1p  transcript_id AT1G10586.1  
At1g10586	chr1:003499264	0.0	C/3499264-3499278,3497338-3497655,3497131-3497199	AT1G10586.2  CDS  product unknown protein  note BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT1G10585.1); Has 32 Blast hits to 32 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10586.2p  transcript_id AT1G10586.2  protein_id AT1G10586.2p  transcript_id AT1G10586.2  
At1g10588	chr1:003501276	0.0	W/3501276-3501360,3501468-3501655	AT1G10588.1  CDS  function Encodes a Gibberellin-regulated GASA/GAST/Snakin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: gibberellin-regulated family protein (TAIR:AT2G39540.1); Has 251 Blast hits to 251 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 251; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10588.1p  transcript_id AT1G10588.1  protein_id AT1G10588.1p  transcript_id AT1G10588.1  
At1g10588	chr1:003501276	0.0	W/3501276-3501360,3501471-3501655	AT1G10588.2  CDS  function Encodes a Gibberellin-regulated GASA/GAST/Snakin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: gibberellin-regulated family protein (TAIR:AT2G39540.1); Has 251 Blast hits to 251 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 251; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10588.2p  transcript_id AT1G10588.2  protein_id AT1G10588.2p  transcript_id AT1G10588.2  
At1g10590	chr1:003502763	0.0	C/3502763-3502991,3502324-3502514	AT1G10590.1  CDS  gene_syn F20B24.1  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  product DNA-binding protein-related  note DNA-binding protein-related; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365); BEST Arabidopsis thaliana protein match is: DNA-binding protein-related (TAIR:AT1G23750.1); Has 139 Blast hits to 139 proteins in 35 species: Archae - 30; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G10590.1p  transcript_id AT1G10590.1  protein_id AT1G10590.1p  transcript_id AT1G10590.1  
At1g10590	chr1:003502763	0.0	C/3502763-3502991,3502324-3502514	AT1G10590.2  CDS  gene_syn F20B24.1  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  product DNA-binding protein-related  note DNA-binding protein-related; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365); BEST Arabidopsis thaliana protein match is: DNA-binding protein-related (TAIR:AT1G23750.1); Has 139 Blast hits to 139 proteins in 35 species: Archae - 30; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G10590.2p  transcript_id AT1G10590.2  protein_id AT1G10590.2p  transcript_id AT1G10590.2  
At1g10590	chr1:003502763	0.0	C/3502763-3503033,3502324-3502514	AT1G10590.3  CDS  gene_syn F20B24.1  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  product DNA-binding protein-related  note DNA-binding protein-related; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365); BEST Arabidopsis thaliana protein match is: DNA-binding protein-related (TAIR:AT1G23750.1); Has 139 Blast hits to 139 proteins in 35 species: Archae - 30; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G10590.3p  transcript_id AT1G10590.3  protein_id AT1G10590.3p  transcript_id AT1G10590.3  
At1g10600	chr1:003503765	0.0	W/3503765-3503917,3504024-3504113,3504426-3504488,3504569-3504643,3504737-3504799,3504882-3504934,3505016-3505190	AT1G10600.1  CDS  gene_syn F20B24.2  go_component chloroplast|GO:0009507||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16144.1); Has 753 Blast hits to 752 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 359; Fungi - 199; Plants - 115; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT1G10600.1p  transcript_id AT1G10600.1  protein_id AT1G10600.1p  transcript_id AT1G10600.1  
At1g10600	chr1:003503765	0.0	W/3503765-3503917,3504024-3504113,3504426-3504488,3504569-3504643,3504737-3504799,3504882-3504934,3505019-3505190	AT1G10600.3  CDS  gene_syn F20B24.2  go_component chloroplast|GO:0009507||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16144.1); Has 771 Blast hits to 770 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 366; Fungi - 201; Plants - 115; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT1G10600.3p  transcript_id AT1G10600.3  protein_id AT1G10600.3p  transcript_id AT1G10600.3  
At1g10600	chr1:003503907	0.0	W/3503907-3503917,3504024-3504113,3504359-3504392,3504569-3504643,3504737-3504799,3504882-3504934,3505016-3505190	AT1G10600.2  CDS  gene_syn F20B24.2  go_component mitochondrion|GO:0005739||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16144.1); Has 601 Blast hits to 601 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 286; Fungi - 140; Plants - 102; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT1G10600.2p  transcript_id AT1G10600.2  protein_id AT1G10600.2p  transcript_id AT1G10600.2  
At1g10610	chr1:003506463	0.0	W/3506463-3506572,3507032-3507229,3507309-3507372,3507450-3507518,3507599-3508033,3508137-3508337,3508416-3508592,3508681-3508752	AT1G10610.1  CDS  gene_syn F20B24.5  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product DNA binding / transcription factor  note DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: AMS (ABORTED MICROSPORES); DNA binding / transcription factor (TAIR:AT2G16910.1); Has 798 Blast hits to 792 proteins in 87 species: Archae - 0; Bacteria - 6; Metazoa - 60; Fungi - 5; Plants - 716; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G10610.1p  transcript_id AT1G10610.1  protein_id AT1G10610.1p  transcript_id AT1G10610.1  
At1g10620	chr1:003511048	0.0	C/3511048-3511975,3510479-3510919,3510231-3510317,3510034-3510104,3509833-3509909,3509599-3509746,3509341-3509502,3509001-3509243	AT1G10620.1  CDS  gene_syn F20B24.6, F20B24_6  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: male gametophyte, sepal, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G23540.1); Has 206791 Blast hits to 142577 proteins in 4159 species: Archae - 446; Bacteria - 28571; Metazoa - 86558; Fungi - 22835; Plants - 31615; Viruses - 4108; Other Eukaryotes - 32658 (source: NCBI BLink).  protein_id AT1G10620.1p  transcript_id AT1G10620.1  protein_id AT1G10620.1p  transcript_id AT1G10620.1  
At1g10630	chr1:003514083	0.0	C/3514083-3514230,3513935-3514005,3513730-3513849,3513525-3513643,3513351-3513432,3513189-3513194	AT1G10630.1  CDS  gene_syn ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F, ATARFA1F, F20B24.7, F20B24_7  gene ATARFA1F  function A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function copper ion binding|GO:0005507|16526091|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function protein binding|GO:0005515|15723828|TAS  go_function GTP binding|GO:0005525|15723828|ISS  go_function GTP binding|GO:0005525|15723828|TAS  go_function phospholipase activator activity|GO:0016004|15723828|TAS  product ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F); GTP binding / copper ion binding / phospholipase activator/ protein binding  note ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F (ATARFA1F); FUNCTIONS IN: protein binding, phospholipase activator activity, GTP binding, copper ion binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ARF1A1C; GTP binding / phospholipase activator/ protein binding (TAIR:AT2G47170.1); Has 12055 Blast hits to 12038 proteins in 420 species: Archae - 12; Bacteria - 43; Metazoa - 6622; Fungi - 1333; Plants - 1251; Viruses - 3; Other Eukaryotes - 2791 (source: NCBI BLink).  protein_id AT1G10630.1p  transcript_id AT1G10630.1  protein_id AT1G10630.1p  transcript_id AT1G10630.1  
At1g10640	chr1:003517400	0.0	C/3517400-3517807,3516848-3516979,3516550-3516771,3516417-3516461,3516140-3516347,3515478-3516061	AT1G10640.1  CDS  gene_syn F20B24.8, F20B24_8  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_component cellular_component|GO:0005575||ND  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product polygalacturonase  note polygalacturonase; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: polygalacturonase, putative / pectinase, putative (TAIR:AT1G60590.1); Has 2429 Blast hits to 2421 proteins in 307 species: Archae - 2; Bacteria - 474; Metazoa - 7; Fungi - 989; Plants - 878; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT1G10640.1p  transcript_id AT1G10640.1  protein_id AT1G10640.1p  transcript_id AT1G10640.1  
At1g10650	chr1:003524749	0.0	C/3524749-3525060,3524122-3524661	AT1G10650.2  CDS  gene_syn F20B24.9, F20B24_9  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G60610.3); Has 903 Blast hits to 903 proteins in 137 species: Archae - 0; Bacteria - 2; Metazoa - 457; Fungi - 2; Plants - 224; Viruses - 96; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT1G10650.2p  transcript_id AT1G10650.2  protein_id AT1G10650.2p  transcript_id AT1G10650.2  
At1g10650	chr1:003525210	0.0	C/3525210-3525318,3524749-3525119,3524122-3524661	AT1G10650.1  CDS  gene_syn F20B24.9, F20B24_9  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G60610.3); Has 921 Blast hits to 921 proteins in 137 species: Archae - 0; Bacteria - 2; Metazoa - 457; Fungi - 2; Plants - 223; Viruses - 96; Other Eukaryotes - 141 (source: NCBI BLink).  protein_id AT1G10650.1p  transcript_id AT1G10650.1  protein_id AT1G10650.1p  transcript_id AT1G10650.1  
At1g10652	chr1:003527709	0.0	W/3527709-3527831	AT1G10652.1  CDS  go_component mitochondrion|GO:0005739||IEA  product unknown protein  note unknown protein; LOCATED IN: mitochondrion; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G10652.1p  transcript_id AT1G10652.1  protein_id AT1G10652.1p  transcript_id AT1G10652.1  
At1g10657	chr1:003530652	0.0	W/3530652-3530729,3530822-3530927,3531193-3531342,3531479-3531522	AT1G10657.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55240.1); Has 57 Blast hits to 57 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10657.1p  transcript_id AT1G10657.1  protein_id AT1G10657.1p  transcript_id AT1G10657.1  
At1g10657	chr1:003530652	0.0	W/3530652-3530729,3530822-3530927,3531265-3531307,3531479-3531572	AT1G10657.4  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55240.1); Has 104 Blast hits to 104 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G10657.4p  transcript_id AT1G10657.4  protein_id AT1G10657.4p  transcript_id AT1G10657.4  
At1g10657	chr1:003530652	0.0	W/3530652-3530729,3530822-3530927,3531265-3531342,3531479-3531522	AT1G10657.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55240.1); Has 104 Blast hits to 104 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G10657.2p  transcript_id AT1G10657.2  protein_id AT1G10657.2p  transcript_id AT1G10657.2  
At1g10657	chr1:003530652	0.0	W/3530652-3530729,3530822-3530927,3531265-3531383	AT1G10657.3  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55240.1); Has 106 Blast hits to 106 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G10657.3p  transcript_id AT1G10657.3  protein_id AT1G10657.3p  transcript_id AT1G10657.3  
At1g10660	chr1:003533009	0.0	W/3533009-3533322,3533408-3533441,3533523-3533747,3533850-3533933,3534081-3534146,3534236-3534327,3534524-3534571,3534682-3534781	AT1G10660.1  CDS  gene_syn F20B24.10, F20B24_10  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62960.1); Has 90 Blast hits to 89 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 1; Plants - 79; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10660.1p  transcript_id AT1G10660.1  protein_id AT1G10660.1p  transcript_id AT1G10660.1  
At1g10660	chr1:003533009	0.0	W/3533009-3533322,3533408-3533441,3533523-3533747,3533850-3533933,3534081-3534146,3534236-3534327,3534524-3534571,3534682-3534781	AT1G10660.2  CDS  gene_syn F20B24.10, F20B24_10  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62960.1); Has 90 Blast hits to 89 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 1; Plants - 79; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10660.2p  transcript_id AT1G10660.2  protein_id AT1G10660.2p  transcript_id AT1G10660.2  
At1g10660	chr1:003533009	0.0	W/3533009-3533322,3533408-3533441,3533523-3533747,3533850-3533933,3534081-3534146,3534236-3534327,3534524-3534571,3534682-3534781	AT1G10660.3  CDS  gene_syn F20B24.10, F20B24_10  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62960.1); Has 90 Blast hits to 89 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 1; Plants - 79; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10660.3p  transcript_id AT1G10660.3  protein_id AT1G10660.3p  transcript_id AT1G10660.3  
At1g10660	chr1:003533009	0.0	W/3533009-3533322,3533408-3533441,3533523-3533747,3533850-3533933,3534081-3534146,3534236-3534327,3534524-3534571,3534682-3534781	AT1G10660.4  CDS  gene_syn F20B24.10, F20B24_10  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62960.1); Has 90 Blast hits to 89 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 1; Plants - 79; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10660.4p  transcript_id AT1G10660.4  protein_id AT1G10660.4p  transcript_id AT1G10660.4  
At1g10670	chr1:003535787	0.0	W/3535787-3535885,3536131-3536307,3536387-3536548,3536650-3536730,3536829-3536880,3536974-3537088,3537159-3537240,3537337-3537432,3537516-3537617,3537695-3537811,3537910-3538098	AT1G10670.1  CDS  gene_syn ACLA-1, ATP-CITRATE LYASE A-1, F20B24.11, F20B24_11  gene ACLA-1  function One of the three genes encoding subunit A of the trimeric protein ATP Citrate Lyase. Antisense ACLA-1 plants cause a reduction in cytosolic acetyl-CoA metabolism and have upregulation of stress-related genes and down-regulation of primary metabolism and growth genes, suggesting the mutation restricts normal growth and developmental processes and puts the plant into a state of stress.  go_component cytosol|GO:0005829|12376641|IDA  go_component citrate lyase complex|GO:0009346|12376641|IDA  go_process acetyl-CoA biosynthetic process|GO:0006085|12376641|TAS  go_process fatty acid biosynthetic process|GO:0006633|15608338|IMP  go_process aging|GO:0007568|15608338|IMP  go_process positive regulation of flower development|GO:0009911|15608338|IMP  go_process wax biosynthetic process|GO:0010025|15608338|IMP  go_process chlorophyll biosynthetic process|GO:0015995|15608338|IMP  go_process carotenoid biosynthetic process|GO:0016117|15608338|IMP  go_process starch biosynthetic process|GO:0019252|15608338|IMP  go_process anthocyanin accumulation in tissues in response to UV light|GO:0043481|15608338|IMP  go_process positive regulation of cell size|GO:0045793|15608338|IMP  go_process regulation of embryonic development|GO:0045995|15608338|IMP  go_process leaf development|GO:0048366|15608338|IMP  go_function ATP citrate synthase activity|GO:0003878|12376641|IDA  product ACLA-1; ATP citrate synthase  note ACLA-1; FUNCTIONS IN: ATP citrate synthase activity; INVOLVED IN: in 12 processes; LOCATED IN: cytosol, citrate lyase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATP-grasp fold, subdomain 2 (InterPro:IPR013816), ATP-grasp fold, succinyl-CoA synthetase-type (InterPro:IPR013650), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: ACLA-2; ATP citrate synthase (TAIR:AT1G60810.1); Has 4147 Blast hits to 4146 proteins in 995 species: Archae - 78; Bacteria - 1932; Metazoa - 335; Fungi - 130; Plants - 62; Viruses - 0; Other Eukaryotes - 1610 (source: NCBI BLink).  protein_id AT1G10670.1p  transcript_id AT1G10670.1  protein_id AT1G10670.1p  transcript_id AT1G10670.1  
At1g10670	chr1:003535787	0.0	W/3535787-3535885,3536131-3536307,3536387-3536548,3536650-3536730,3536829-3536880,3536974-3537088,3537159-3537240,3537337-3537432,3537516-3537617,3537695-3537811,3537910-3538098	AT1G10670.2  CDS  gene_syn ACLA-1, ATP-CITRATE LYASE A-1, F20B24.11, F20B24_11  gene ACLA-1  function One of the three genes encoding subunit A of the trimeric protein ATP Citrate Lyase. Antisense ACLA-1 plants cause a reduction in cytosolic acetyl-CoA metabolism and have upregulation of stress-related genes and down-regulation of primary metabolism and growth genes, suggesting the mutation restricts normal growth and developmental processes and puts the plant into a state of stress.  go_component cytosol|GO:0005829|12376641|IDA  go_component citrate lyase complex|GO:0009346|12376641|IDA  go_process acetyl-CoA biosynthetic process|GO:0006085|12376641|TAS  go_process fatty acid biosynthetic process|GO:0006633|15608338|IMP  go_process aging|GO:0007568|15608338|IMP  go_process positive regulation of flower development|GO:0009911|15608338|IMP  go_process wax biosynthetic process|GO:0010025|15608338|IMP  go_process chlorophyll biosynthetic process|GO:0015995|15608338|IMP  go_process carotenoid biosynthetic process|GO:0016117|15608338|IMP  go_process starch biosynthetic process|GO:0019252|15608338|IMP  go_process anthocyanin accumulation in tissues in response to UV light|GO:0043481|15608338|IMP  go_process positive regulation of cell size|GO:0045793|15608338|IMP  go_process regulation of embryonic development|GO:0045995|15608338|IMP  go_process leaf development|GO:0048366|15608338|IMP  go_function ATP citrate synthase activity|GO:0003878|12376641|IDA  product ACLA-1; ATP citrate synthase  note ACLA-1; FUNCTIONS IN: ATP citrate synthase activity; INVOLVED IN: in 12 processes; LOCATED IN: cytosol, citrate lyase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATP-grasp fold, subdomain 2 (InterPro:IPR013816), ATP-grasp fold, succinyl-CoA synthetase-type (InterPro:IPR013650), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: ACLA-2; ATP citrate synthase (TAIR:AT1G60810.1); Has 4147 Blast hits to 4146 proteins in 995 species: Archae - 78; Bacteria - 1932; Metazoa - 335; Fungi - 130; Plants - 62; Viruses - 0; Other Eukaryotes - 1610 (source: NCBI BLink).  protein_id AT1G10670.2p  transcript_id AT1G10670.2  protein_id AT1G10670.2p  transcript_id AT1G10670.2  
At1g10680	chr1:003543528	0.0	C/3543528-3543782,3543003-3543057,3542745-3542920,3542337-3542537,3541989-3542248,3541374-3541902,3540925-3541292,3540447-3540832,3540107-3540348,3539772-3540019,3539280-3539692,3538801-3539141,3538470-3538679	AT1G10680.1  CDS  gene_syn F20B24.12, F20B24_12, P-GLYCOPROTEIN 10, PGP10  gene PGP10  go_process transport|GO:0006810||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product PGP10 (P-GLYCOPROTEIN 10); ATPase, coupled to transmembrane movement of substances  note P-GLYCOPROTEIN 10 (PGP10); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: mitochondrion; EXPRESSED IN: sperm cell, male gametophyte; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PGP2 (P-GLYCOPROTEIN 2); ATPase, coupled to transmembrane movement of substances (TAIR:AT4G25960.1); Has 502951 Blast hits to 234834 proteins in 2684 species: Archae - 8786; Bacteria - 336980; Metazoa - 15884; Fungi - 8408; Plants - 4543; Viruses - 30; Other Eukaryotes - 128320 (source: NCBI BLink).  protein_id AT1G10680.1p  transcript_id AT1G10680.1  protein_id AT1G10680.1p  transcript_id AT1G10680.1  
At1g10682	chr1:003544991	0.0	C/3544991-3545471	AT1G10682.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G10682.1  
At1g10690	chr1:003550236	0.0	C/3550236-3550568	AT1G10690.1  CDS  gene_syn T16B5.17, T16B5_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, leaf whorl, embryo; EXPRESSED DURING: E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G60783.1); Has 20 Blast hits to 20 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10690.1p  transcript_id AT1G10690.1  protein_id AT1G10690.1p  transcript_id AT1G10690.1  
At1g10700	chr1:003554157	0.0	W/3554157-3554548,3554821-3555136,3555227-3555322,3555421-3555489,3555722-3555850,3555934-3556033,3556141-3556274	AT1G10700.1  CDS  gene_syn T16B5.16  go_component chloroplast|GO:0009507||IEA  go_process nucleoside metabolic process|GO:0009116||IEA  go_process ribonucleoside monophosphate biosynthetic process|GO:0009156||IEA  go_process nucleotide biosynthetic process|GO:0009165||IEA  go_process cellular biosynthetic process|GO:0044249||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function ribose phosphate diphosphokinase activity|GO:0004749||IEA  go_process nucleotide biosynthetic process|GO:0009165||ISS  go_function ribose phosphate diphosphokinase activity|GO:0004749||ISS  product ribose-phosphate pyrophosphokinase 3 / phosphoribosyl diphosphate synthetase 3 (PRS3)  note ribose-phosphate pyrophosphokinase 3 / phosphoribosyl diphosphate synthetase 3 (PRS3); FUNCTIONS IN: magnesium ion binding, ribose phosphate diphosphokinase activity; INVOLVED IN: cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836), Phosphoribosyl pyrophosphokinase (InterPro:IPR005946), Phosphoribosyl pyrophosphate synthetase, conserved site (InterPro:IPR000842); BEST Arabidopsis thaliana protein match is: ribose-phosphate pyrophosphokinase 4 / phosphoribosyl diphosphate synthetase 4 (PRS4) (TAIR:AT2G42910.1); Has 6424 Blast hits to 6423 proteins in 1522 species: Archae - 142; Bacteria - 3196; Metazoa - 415; Fungi - 221; Plants - 120; Viruses - 5; Other Eukaryotes - 2325 (source: NCBI BLink).  protein_id AT1G10700.1p  transcript_id AT1G10700.1  protein_id AT1G10700.1p  transcript_id AT1G10700.1  
At1g10705	chr1:003557114	0.0	W/3557114-3557457	AT1G10705.1  pseudogenic_transcript  pseudo  function Encodes a Maternally expressed gene (MEG) family protein [pseudogene]  
At1g10710	chr1:003558423	0.0	W/3558423-3558695,3558864-3558980,3559150-3559215,3559353-3559462,3559542-3559700,3559781-3559965,3560057-3560109,3560197-3560224,3560349-3560390,3561296-3561495	AT1G10710.1  CDS  gene_syn T16B5.15  function Computational predictions suggested the presence of a small cysteine-rich protein beginning in intron 9 (Silverstein 2007), but subsequent analysis revealed that this region contains a tenth exon for the At1g10710 gene.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10717.1); Has 15 Blast hits to 15 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10710.1p  transcript_id AT1G10710.1  protein_id AT1G10710.1p  transcript_id AT1G10710.1  
At1g10710	chr1:003558423	0.0	W/3558423-3558695,3558864-3558980,3559150-3559215,3559353-3559462,3559542-3559700,3559781-3559965,3560057-3560109,3560197-3560224,3560349-3560407	AT1G10710.2  CDS  gene_syn T16B5.15  function Computational predictions suggested the presence of a small cysteine-rich protein beginning in intron 9 (Silverstein 2007), but subsequent analysis revealed that this region contains a tenth exon for the At1g10710 gene.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; Has 11 Blast hits to 11 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10710.2p  transcript_id AT1G10710.2  protein_id AT1G10710.2p  transcript_id AT1G10710.2  
At1g10717	chr1:003562180	0.0	W/3562180-3562243,3562346-3562554	AT1G10717.1  CDS  function Encodes a Maternally expressed gene (MEG) family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27135.1); Has 14 Blast hits to 14 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10717.1p  transcript_id AT1G10717.1  protein_id AT1G10717.1p  transcript_id AT1G10717.1  
At1g10720	chr1:003562964	0.0	W/3562964-3563579,3563680-3563867,3563961-3564446	AT1G10720.1  CDS  gene_syn T16B5.14, T16B5_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product BSD domain-containing protein  note BSD domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT3G49800.1); Has 1529 Blast hits to 1401 proteins in 161 species: Archae - 0; Bacteria - 12; Metazoa - 829; Fungi - 160; Plants - 169; Viruses - 21; Other Eukaryotes - 338 (source: NCBI BLink).  protein_id AT1G10720.1p  transcript_id AT1G10720.1  protein_id AT1G10720.1p  transcript_id AT1G10720.1  
At1g10730	chr1:003565463	0.0	W/3565463-3565591,3565732-3565878,3565985-3566047,3566158-3566334,3566409-3566512,3566605-3566712,3566837-3566933,3567028-3567125,3567226-3567367,3567443-3567565,3567681-3567779	AT1G10730.1  CDS  gene_syn T16B5.13, T16B5_13  go_component clathrin adaptor complex|GO:0030131||IEA  go_process transport|GO:0006810||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function protein binding|GO:0005515||IEA  go_component clathrin vesicle coat|GO:0030125||ISS  go_process intracellular protein transport|GO:0006886||ISS  product clathrin adaptor complexes medium subunit family protein  note clathrin adaptor complexes medium subunit family protein; FUNCTIONS IN: protein binding; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport; LOCATED IN: clathrin vesicle coat, clathrin adaptor complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, conserved site (InterPro:IPR018240), Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968), Clathrin adaptor, mu subunit (InterPro:IPR001392), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: HAP13 (HAPLESS 13); protein binding (TAIR:AT1G60780.1); Has 1636 Blast hits to 1593 proteins in 209 species: Archae - 0; Bacteria - 0; Metazoa - 926; Fungi - 314; Plants - 104; Viruses - 0; Other Eukaryotes - 292 (source: NCBI BLink).  protein_id AT1G10730.1p  transcript_id AT1G10730.1  protein_id AT1G10730.1p  transcript_id AT1G10730.1  
At1g10740	chr1:003570224	0.0	C/3570224-3570466,3570041-3570135,3569837-3569940,3569641-3569741,3569450-3569553,3568829-3569266,3568612-3568747	AT1G10740.2  CDS  gene_syn T16B5.12, T16B5_12  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23330.1); Has 364 Blast hits to 364 proteins in 87 species: Archae - 0; Bacteria - 252; Metazoa - 1; Fungi - 4; Plants - 26; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).  protein_id AT1G10740.2p  transcript_id AT1G10740.2  protein_id AT1G10740.2p  transcript_id AT1G10740.2  
At1g10740	chr1:003570224	0.0	C/3570224-3570466,3570041-3570135,3569837-3569940,3569641-3569741,3569450-3569553,3568829-3569266,3568616-3568747,3568343-3568547	AT1G10740.1  CDS  gene_syn T16B5.12, T16B5_12  go_component endomembrane system|GO:0012505||IEA  go_process glycerol biosynthetic process|GO:0006114||IEA  product unknown protein  note unknown protein; INVOLVED IN: glycerol biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23330.1); Has 369 Blast hits to 369 proteins in 87 species: Archae - 0; Bacteria - 252; Metazoa - 1; Fungi - 4; Plants - 26; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT1G10740.1p  transcript_id AT1G10740.1  protein_id AT1G10740.1p  transcript_id AT1G10740.1  
At1g10745	chr1:003572710	0.0	W/3572710-3572770,3572879-3573066	AT1G10745.1  CDS  function Encodes a Maternally expressed gene (MEG) family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10747.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10745.1p  transcript_id AT1G10745.1  protein_id AT1G10745.1p  transcript_id AT1G10745.1  
At1g10747	chr1:003574312	0.0	W/3574312-3574375,3574449-3574636	AT1G10747.1  CDS  function Encodes a Maternally expressed gene (MEG) family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10717.1); Has 17 Blast hits to 17 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10747.1p  transcript_id AT1G10747.1  protein_id AT1G10747.1p  transcript_id AT1G10747.1  
At1g10750	chr1:003577948	0.0	C/3577948-3578310,3577625-3577711,3577327-3577536,3576445-3576609,3576289-3576342,3576020-3576166,3574986-3575363	AT1G10750.1  CDS  gene_syn T16B5.11, T16B5_11  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  product unknown protein  note unknown protein; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70550.2); Has 445 Blast hits to 415 proteins in 19 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 10; Plants - 429; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10750.1p  transcript_id AT1G10750.1  protein_id AT1G10750.1p  transcript_id AT1G10750.1  
At1g10760	chr1:003589798	0.0	C/3589798-3590043,3589553-3589594,3589365-3589465,3589193-3589271,3588983-3589074,3588730-3588883,3587915-3588310,3587702-3587809,3587489-3587584,3587252-3587392,3587072-3587160,3586687-3586821,3586343-3586505,3585982-3586071,3585724-3585909,3585523-3585585,3585382-3585444,3585228-3585287,3584978-3585130,3584752-3584835,3584348-3584524,3584145-3584251,3583812-3584025,3583624-3583727,3583338-3583470,3583032-3583157,3582602-3582712,3582158-3582256,3581907-3582080,3581736-3581828,3581516-3581631,3581210-3581414	AT1G10760.1  CDS  gene_syn GWD, GWD1, SEX1, SOP, SOP1, STARCH EXCESS 1, T16B5.10, T16B5_10  gene SEX1  function Encodes an & 945;-glucan, water dikinase required for starch degradation. Involved in cold-induced freezing tolerance. Mutations that eliminate the GWD protein or affect the dikinase domain of the enzyme dramatically reduce both the amount of phosphate in the amylopectin and the rate of starch degradation. Mature leaves of these mutants accumulate amounts of starch up to seven times greater than those in wild-type leaves. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C6 position.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process starch catabolic process|GO:0005983|11487701|IMP  go_process circadian rhythm|GO:0007623|16297066|IEP  go_process response to symbiotic fungus|GO:0009610|15710607|IEP  go_process response to symbiotic fungus|GO:0009610|17397506|IEP  go_process cold acclimation|GO:0009631|15894744|IMP  go_process response to trehalose stimulus|GO:0010353|17031512|IEP  go_function alpha-glucan, water dikinase activity|GO:0050521|11487701|IMP  go_function alpha-glucan, water dikinase activity|GO:0050521|15894744|TAS  go_function alpha-glucan, water dikinase activity|GO:0050521|16914145|IMP  product SEX1 (STARCH EXCESS 1); alpha-glucan, water dikinase  note STARCH EXCESS 1 (SEX1); FUNCTIONS IN: alpha-glucan, water dikinase activity; INVOLVED IN: cold acclimation, response to symbiotic fungus, response to trehalose stimulus, circadian rhythm, starch catabolic process; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate phosphate dikinase, PEP/pyruvate-binding (InterPro:IPR002192), PEP-utilising enzyme, mobile region, conserved site (InterPro:IPR018274), PEP-utilizing enzyme (InterPro:IPR000121); BEST Arabidopsis thaliana protein match is: PWD (PHOSPHOGLUCAN, WATER DIKINASE); ATP binding / kinase (TAIR:AT4G24450.1); Has 1483 Blast hits to 1470 proteins in 615 species: Archae - 116; Bacteria - 1049; Metazoa - 19; Fungi - 7; Plants - 111; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink).  protein_id AT1G10760.1p  transcript_id AT1G10760.1  protein_id AT1G10760.1p  transcript_id AT1G10760.1  
At1g10770	chr1:003591859	0.0	C/3591859-3592362	AT1G10770.1  CDS  gene_syn T16B5.9  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT1G60760.1); Has 92 Blast hits to 92 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10770.1p  transcript_id AT1G10770.1  protein_id AT1G10770.1p  transcript_id AT1G10770.1  
At1g10780	chr1:003593569	0.0	C/3593569-3594310,3593202-3593479,3592875-3593111	AT1G10780.1  CDS  gene_syn T16B5.8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G67190.1); Has 144 Blast hits to 143 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G10780.1p  transcript_id AT1G10780.1  protein_id AT1G10780.1p  transcript_id AT1G10780.1  
At1g10790	chr1:003596360	0.0	W/3596360-3596603,3596990-3597102,3597194-3597847	AT1G10790.1  CDS  gene_syn T16B5.7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G56590.2); Has 40 Blast hits to 40 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10790.1p  transcript_id AT1G10790.1  protein_id AT1G10790.1p  transcript_id AT1G10790.1  
At1g10800	chr1:003598158	0.0	C/3598158-3598514	AT1G10800.1  CDS  gene_syn T16B5.6  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; Has 10 Blast hits to 10 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10800.1p  transcript_id AT1G10800.1  protein_id AT1G10800.1p  transcript_id AT1G10800.1  
At1g10810	chr1:003599369	0.0	W/3599369-3599590,3599677-3599877,3599962-3600134,3600224-3600326,3600422-3600757	AT1G10810.1  CDS  gene_syn T16B5.5, T16B5_5  go_process oxidation reduction|GO:0055114||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function aldo-keto reductase activity|GO:0004033||ISS  product aldo/keto reductase family protein  note aldo/keto reductase family protein; FUNCTIONS IN: oxidoreductase activity, aldo-keto reductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395); BEST Arabidopsis thaliana protein match is: aldo/keto reductase family protein (TAIR:AT1G60730.1); Has 17462 Blast hits to 17444 proteins in 1449 species: Archae - 334; Bacteria - 9970; Metazoa - 1282; Fungi - 1370; Plants - 705; Viruses - 0; Other Eukaryotes - 3801 (source: NCBI BLink).  protein_id AT1G10810.1p  transcript_id AT1G10810.1  protein_id AT1G10810.1p  transcript_id AT1G10810.1  
At1g10820	chr1:003604436	0.0	C/3604436-3604650,3603922-3604021,3602999-3603055,3602354-3602459,3602168-3602250,3601916-3601977,3601713-3601809,3601437-3601493	AT1G10820.2  CDS  gene_syn T16B5.4, T16B5_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G60670.2); Has 91 Blast hits to 91 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G10820.2p  transcript_id AT1G10820.2  protein_id AT1G10820.2p  transcript_id AT1G10820.2  
At1g10820	chr1:003604620	0.0	C/3604620-3604650,3604436-3604541,3603922-3604021,3602999-3603055,3602354-3602459,3602168-3602250,3601916-3601977,3601713-3601809,3601437-3601493	AT1G10820.1  CDS  gene_syn T16B5.4, T16B5_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G60670.2); Has 91 Blast hits to 91 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G10820.1p  transcript_id AT1G10820.1  protein_id AT1G10820.1p  transcript_id AT1G10820.1  
At1g10830	chr1:003607039	0.0	C/3607039-3607449,3606815-3606961,3606411-3606710	AT1G10830.2  CDS  gene_syn T16B5.3, T16B5_3  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product sodium symporter-related  note sodium symporter-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 254 Blast hits to 254 proteins in 59 species: Archae - 0; Bacteria - 98; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).  protein_id AT1G10830.2p  transcript_id AT1G10830.2  protein_id AT1G10830.2p  transcript_id AT1G10830.2  
At1g10830	chr1:003607039	0.0	C/3607039-3607449,3606815-3606961,3606501-3606710,3605736-3606071	AT1G10830.1  CDS  gene_syn T16B5.3, T16B5_3  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product sodium symporter-related  note sodium symporter-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NnrU (InterPro:IPR009915); Has 324 Blast hits to 324 proteins in 78 species: Archae - 0; Bacteria - 132; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).  protein_id AT1G10830.1p  transcript_id AT1G10830.1  protein_id AT1G10830.1p  transcript_id AT1G10830.1  
At1g10840	chr1:003609608	0.0	C/3609608-3609657,3609455-3609521,3609048-3609181,3608914-3608962,3608706-3608777,3608514-3608615,3608361-3608428,3608023-3608175,3607885-3607942	AT1G10840.2  CDS  gene_syn T16B5.2, T16B5_2, TIF3H1, TRANSLATION INITIATION FACTOR 3 SUBUNIT H1  gene TIF3H1  function Encodes eukaryotic initiation factor 3H1 subunit (TIF3H1).  go_component eukaryotic translation initiation factor 3 complex|GO:0005852||ISS  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product TIF3H1; translation initiation factor  note TIF3H1; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: eukaryotic translation initiation factor 3 complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 283 Blast hits to 283 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 141; Fungi - 68; Plants - 34; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT1G10840.2p  transcript_id AT1G10840.2  protein_id AT1G10840.2p  transcript_id AT1G10840.2  
At1g10840	chr1:003610290	0.0	C/3610290-3610299,3610094-3610173,3609811-3609927,3609608-3609711,3609455-3609521,3609048-3609181,3608914-3608962,3608706-3608777,3608514-3608615,3608361-3608428,3608023-3608175,3607885-3607942	AT1G10840.1  CDS  gene_syn T16B5.2, T16B5_2, TIF3H1, TRANSLATION INITIATION FACTOR 3 SUBUNIT H1  gene TIF3H1  function Encodes eukaryotic initiation factor 3H1 subunit (TIF3H1).  go_component eukaryotic translation initiation factor 3 complex|GO:0005852||ISS  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product TIF3H1; translation initiation factor  note TIF3H1; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: eukaryotic translation initiation factor 3 complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); Has 945 Blast hits to 944 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 428; Fungi - 238; Plants - 146; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).  protein_id AT1G10840.1p  transcript_id AT1G10840.1  protein_id AT1G10840.1p  transcript_id AT1G10840.1  
At1g10850	chr1:003612228	0.0	W/3612228-3613557,3613682-3614343	AT1G10850.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product ATP binding / protein binding / protein kinase/ protein serine/threonine kinase  note ATP binding / protein binding / protein kinase/ protein serine/threonine kinase; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT1G60630.1); Has 95768 Blast hits to 76205 proteins in 2010 species: Archae - 39; Bacteria - 7177; Metazoa - 31531; Fungi - 5598; Plants - 38023; Viruses - 254; Other Eukaryotes - 13146 (source: NCBI BLink).  protein_id AT1G10850.1p  transcript_id AT1G10850.1  protein_id AT1G10850.1p  transcript_id AT1G10850.1  
At1g10865	chr1:003615240	0.0	C/3615240-3615308,3615037-3615141,3614789-3614830	AT1G10865.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase assembly protein PET191, N-terminal (InterPro:IPR018793); Has 170 Blast hits to 170 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 85; Fungi - 61; Plants - 21; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G10865.1p  transcript_id AT1G10865.1  protein_id AT1G10865.1p  transcript_id AT1G10865.1  
At1g10865	chr1:003615240	0.0	C/3615240-3615308,3615037-3615141,3614821-3614826	AT1G10865.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase assembly protein PET191, N-terminal (InterPro:IPR018793); Has 64 Blast hits to 64 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 34; Fungi - 7; Plants - 21; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G10865.2p  transcript_id AT1G10865.2  protein_id AT1G10865.2p  transcript_id AT1G10865.2  
At1g10870	chr1:003623565	0.0	C/3623565-3623612,3623362-3623438,3622920-3623020,3622763-3622833,3622400-3622462,3622003-3622047,3621751-3621816,3621332-3621379,3621147-3621242,3621001-3621042,3620358-3620564,3619911-3620036,3619189-3619404,3618873-3618959,3618526-3618786,3618077-3618198,3617839-3617929,3617226-3617671,3616905-3617019	AT1G10870.1  CDS  gene_syn AGD4, ARF-GAP domain 4, T19D16.20, T19D16_20  gene AGD4  function A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD4 belongs to the Class 1, together with AGD1, AGD2, and AGD3.  go_component cytoplasm|GO:0005737||IEA  go_process regulation of ARF GTPase activity|GO:0032312||IEA  go_function protein binding|GO:0005515||IEA  go_function ARF GTPase activator activity|GO:0008060||IEA  go_function zinc ion binding|GO:0008270||IEA  product AGD4 (ARF-GAP domain 4); ARF GTPase activator/ protein binding / zinc ion binding  note ARF-GAP domain 4 (AGD4); FUNCTIONS IN: protein binding, ARF GTPase activator activity, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164), Pleckstrin homology-type (InterPro:IPR011993), BAR (InterPro:IPR004148), Pleckstrin homology (InterPro:IPR001849), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: AGD2 (ARF-GAP DOMAIN 2); ARF GTPase activator/ protein binding / zinc ion binding (TAIR:AT1G60860.1); Has 19149 Blast hits to 12143 proteins in 429 species: Archae - 41; Bacteria - 1055; Metazoa - 10593; Fungi - 1494; Plants - 727; Viruses - 251; Other Eukaryotes - 4988 (source: NCBI BLink).  protein_id AT1G10870.1p  transcript_id AT1G10870.1  protein_id AT1G10870.1p  transcript_id AT1G10870.1  
At1g10880	chr1:003626500	0.0	C/3626500-3627021,3625835-3626380,3625169-3625348,3624877-3625068,3624651-3624776,3624334-3624504,3624035-3624253	AT1G10880.1  CDS  gene_syn T19D16.28, T19D16_28  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF266, plant (InterPro:IPR004949); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11730.1); Has 415 Blast hits to 411 proteins in 40 species: Archae - 0; Bacteria - 3; Metazoa - 7; Fungi - 4; Plants - 310; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).  protein_id AT1G10880.1p  transcript_id AT1G10880.1  protein_id AT1G10880.1p  transcript_id AT1G10880.1  
At1g10890	chr1:003628081	0.0	W/3628081-3628229,3629098-3629304,3629845-3630064,3630255-3630545	AT1G10890.1  CDS  gene_syn T19D16.19, T19D16_19  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: petal, flower, leaf; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13340.1); Has 124670 Blast hits to 55842 proteins in 2000 species: Archae - 645; Bacteria - 12681; Metazoa - 61376; Fungi - 8660; Plants - 4059; Viruses - 685; Other Eukaryotes - 36564 (source: NCBI BLink).  protein_id AT1G10890.1p  transcript_id AT1G10890.1  protein_id AT1G10890.1p  transcript_id AT1G10890.1  
At1g10900	chr1:003636406	0.0	C/3636406-3636416,3635302-3636321,3634798-3634965,3634092-3634257,3633775-3633885,3633502-3633689,3633135-3633289,3632754-3632919,3632396-3632675	AT1G10900.1  CDS  gene_syn T19D16.18, T19D16_18  go_component plasma membrane|GO:0005886|17317660|IDA  go_process phosphatidylinositol metabolic process|GO:0046488||IEA  go_function ATP binding|GO:0005524||IEA  go_function phosphatidylinositol phosphate kinase activity|GO:0016307||IEA  go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308||IEA  go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308||ISS  product phosphatidylinositol-4-phosphate 5-kinase family protein  note phosphatidylinositol-4-phosphate 5-kinase family protein; FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding; INVOLVED IN: phosphatidylinositol metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, plant (InterPro:IPR017163), MORN motif (InterPro:IPR003409), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: phosphatidylinositol-4-phosphate 5-kinase family protein (TAIR:AT1G60890.1); Has 21911 Blast hits to 6231 proteins in 383 species: Archae - 0; Bacteria - 2241; Metazoa - 3448; Fungi - 276; Plants - 715; Viruses - 0; Other Eukaryotes - 15231 (source: NCBI BLink).  protein_id AT1G10900.1p  transcript_id AT1G10900.1  protein_id AT1G10900.1p  transcript_id AT1G10900.1  
At1g10910	chr1:003639908	0.0	W/3639908-3640179,3640547-3640631,3640743-3641003,3641241-3641543,3642079-3642183,3642380-3642479,3642785-3643104,3643196-3643372,3643454-3643582,3643732-3643974	AT1G10910.1  CDS  gene_syn T19D16.17, T19D16_17  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: PTAC2 (PLASTID TRANSCRIPTIONALLY ACTIVE2) (TAIR:AT1G74850.1); Has 17570 Blast hits to 5782 proteins in 175 species: Archae - 1; Bacteria - 18; Metazoa - 305; Fungi - 261; Plants - 16266; Viruses - 0; Other Eukaryotes - 719 (source: NCBI BLink).  protein_id AT1G10910.1p  transcript_id AT1G10910.1  protein_id AT1G10910.1p  transcript_id AT1G10910.1  
At1g10920	chr1:003646503	0.0	C/3646503-3647004,3646194-3646352,3644587-3646109	AT1G10920.1  CDS  gene_syn LOV1, T19D16.16, T19D16_16  gene LOV1  function Encodes LOV1, a disease susceptibility gene that, paradoxically, is a member of the NBS-LRR resistance gene family. Conditions susceptibility to the fungus Cochliobolus victoriae and victorin-dependent induction of defense-associated proteins. Saturation mutagenesis identified 59 lov mutations that all display reduced susceptibility to vitorin. Mutations in known defense response pathways do not prevent susceptibility to C. victoriae.  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process response to molecule of fungal origin|GO:0002238|17804803|IEP  go_process defense response|GO:0006952||ISS  go_process defense response to fungus|GO:0050832|17804803|IMP  product LOV1; ATP binding  note LOV1; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response to fungus, response to molecule of fungal origin, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182); BEST Arabidopsis thaliana protein match is: ATP binding (TAIR:AT1G53350.1); Has 11724 Blast hits to 10662 proteins in 443 species: Archae - 16; Bacteria - 886; Metazoa - 1433; Fungi - 78; Plants - 9101; Viruses - 0; Other Eukaryotes - 210 (source: NCBI BLink).  protein_id AT1G10920.1p  transcript_id AT1G10920.1  protein_id AT1G10920.1p  transcript_id AT1G10920.1  
At1g10920	chr1:003646503	0.0	C/3646503-3647004,3646194-3646352,3644587-3646109	AT1G10920.2  CDS  gene_syn LOV1, T19D16.16, T19D16_16  gene LOV1  function Encodes LOV1, a disease susceptibility gene that, paradoxically, is a member of the NBS-LRR resistance gene family. Conditions susceptibility to the fungus Cochliobolus victoriae and victorin-dependent induction of defense-associated proteins. Saturation mutagenesis identified 59 lov mutations that all display reduced susceptibility to vitorin. Mutations in known defense response pathways do not prevent susceptibility to C. victoriae.  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process response to molecule of fungal origin|GO:0002238|17804803|IEP  go_process defense response|GO:0006952||ISS  go_process defense response to fungus|GO:0050832|17804803|IMP  product LOV1; ATP binding  note LOV1; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response to fungus, response to molecule of fungal origin, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182); BEST Arabidopsis thaliana protein match is: ATP binding (TAIR:AT1G53350.1); Has 11724 Blast hits to 10662 proteins in 443 species: Archae - 16; Bacteria - 886; Metazoa - 1433; Fungi - 78; Plants - 9101; Viruses - 0; Other Eukaryotes - 210 (source: NCBI BLink).  protein_id AT1G10920.2p  transcript_id AT1G10920.2  protein_id AT1G10920.2p  transcript_id AT1G10920.2  
At1g10930	chr1:003654975	0.0	C/3654975-3654997,3654718-3654876,3654204-3654261,3653562-3653975,3653168-3653341,3652949-3653079,3652309-3652675,3652104-3652235,3651863-3651949,3651622-3651749,3651261-3651381,3651015-3651166,3650816-3650951,3650605-3650728,3650464-3650534,3650282-3650350,3650040-3650162,3649802-3649960,3649644-3649724,3649259-3649420,3649093-3649148,3648831-3648957,3648642-3648736,3648464-3648541,3648032-3648371	AT1G10930.1  CDS  gene_syn ATRECQ4A, ATSGS1, RECQ4A, T19D16.15, T19D16_15  gene RECQ4A  function DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination.  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_process telomere maintenance|GO:0000723|16146519|IMP  go_process double-strand break repair via homologous recombination|GO:0000724|16146519|IGI  go_process double-strand break repair via homologous recombination|GO:0000724|16146519|IMP  go_process response to DNA damage stimulus|GO:0006974|16146519|IGI  go_process response to DNA damage stimulus|GO:0006974|16146519|IMP  go_process chromosome organization|GO:0051276|18000056|IMP  go_function ATP-dependent helicase activity|GO:0008026||ISS  product RECQ4A; ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding  note RECQ4A; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: chromosome organization, telomere maintenance, double-strand break repair via homologous recombination, response to DNA damage stimulus; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal region (InterPro:IPR018329), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), Helicase and RNase D C-terminal, HRDC (InterPro:IPR002121); BEST Arabidopsis thaliana protein match is: ATRECQ4B (ARABIDOPSIS RECQ HELICASE L4B); ATP binding / ATP-dependent helicase/ DNA helicase/ catalytic/ helicase/ nucleic acid binding / nucleotide binding (TAIR:AT1G60930.1); Has 22344 Blast hits to 22263 proteins in 1615 species: Archae - 398; Bacteria - 11405; Metazoa - 3108; Fungi - 1944; Plants - 900; Viruses - 17; Other Eukaryotes - 4572 (source: NCBI BLink).  protein_id AT1G10930.1p  transcript_id AT1G10930.1  protein_id AT1G10930.1p  transcript_id AT1G10930.1  
At1g10940	chr1:003658051	0.0	C/3658051-3658170,3657739-3657813,3657523-3657624,3657279-3657332,3657092-3657184,3656919-3657011,3656666-3656770,3656484-3656582,3656050-3656400	AT1G10940.1  CDS  gene_syn ARABIDOPSIS SERINE/THREONINE KINASE 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, ASK1, SNF1-RELATED PROTEIN KINASE 2.4, SNRK2-4, SNRK2.4, SRK2A, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-4  gene SNRK2.4  function Encodes a plant protein kinase similar to the calcium/calmodulin-dependent protein kinase subfamily and the SNF1 kinase subfamily (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Kinase activity of its homolog in tobacco is induced by hyperosmotic condition within 1 minute.  go_component nucleus|GO:0005634|18433157|IDA  go_process response to osmotic stress|GO:0006970|15292193|IDA  go_process response to salt stress|GO:0009651|15292193|IDA  go_function kinase activity|GO:0016301|15292193|IDA  go_function kinase activity|GO:0016301||ISS  product SNRK2.4 (SNF1-RELATED PROTEIN KINASE 2.4); kinase  note SNF1-RELATED PROTEIN KINASE 2.4 (SNRK2.4); FUNCTIONS IN: kinase activity; INVOLVED IN: response to salt stress, response to osmotic stress; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Plant protein serine/threonine kinase-like (InterPro:IPR015740), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: SNRK2.10 (SNF1-RELATED PROTEIN KINASE 2.10); kinase (TAIR:AT1G60940.2); Has 82095 Blast hits to 80703 proteins in 1947 species: Archae - 47; Bacteria - 7215; Metazoa - 35590; Fungi - 7981; Plants - 14662; Viruses - 482; Other Eukaryotes - 16118 (source: NCBI BLink).  protein_id AT1G10940.1p  transcript_id AT1G10940.1  protein_id AT1G10940.1p  transcript_id AT1G10940.1  
At1g10950	chr1:003659322	0.0	W/3659322-3659411,3660325-3660517,3660622-3660726,3661050-3661067,3661162-3661259,3661341-3661493,3661721-3661855,3662005-3662171,3662284-3662378,3662463-3662836,3663197-3663470,3663555-3663622	AT1G10950.1  CDS  gene_syn T19D16.13, T19D16_13  go_component membrane|GO:0016020|17432890|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component integral to membrane|GO:0016021||ISS  product endomembrane protein 70, putative  note endomembrane protein 70, putative; LOCATED IN: integral to membrane, Golgi apparatus, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: endomembrane protein 70, putative (TAIR:AT2G01970.1); Has 1032 Blast hits to 991 proteins in 166 species: Archae - 0; Bacteria - 8; Metazoa - 443; Fungi - 164; Plants - 234; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink).  protein_id AT1G10950.1p  transcript_id AT1G10950.1  protein_id AT1G10950.1p  transcript_id AT1G10950.1  
At1g10960	chr1:003664445	0.0	W/3664445-3664891	AT1G10960.1  CDS  gene_syn ATFD1, FERREDOXIN 1, T19D16.12, T19D16_12  gene ATFD1  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process electron transport chain|GO:0022900||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function iron-sulfur cluster binding|GO:0051536||IEA  go_function 2 iron, 2 sulfur cluster binding|GO:0051537||IEA  product ATFD1 (FERREDOXIN 1); 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding  note FERREDOXIN 1 (ATFD1); FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding; INVOLVED IN: electron transport chain; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), Ferredoxin (InterPro:IPR001041), Ferredoxin [2Fe-2S], plant (InterPro:IPR010241), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: FED A; 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding (TAIR:AT1G60950.1); Has 5347 Blast hits to 5345 proteins in 903 species: Archae - 63; Bacteria - 3637; Metazoa - 8; Fungi - 9; Plants - 447; Viruses - 2; Other Eukaryotes - 1181 (source: NCBI BLink).  protein_id AT1G10960.1p  transcript_id AT1G10960.1  protein_id AT1G10960.1p  transcript_id AT1G10960.1  
At1g10970	chr1:003666919	0.0	C/3666919-3666933,3666761-3666818,3665858-3666555,3665201-3665656	AT1G10970.1  CDS  gene_syn ATZIP4, T19D16.11, T19D16_11, ZINC TRANSPORTER 4 PRECURSOR, ZIP4  gene ZIP4  function A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root and shoot. Expression is regulated by copper, but response to copper deficiency is detected only after three weeks of deficiency.  go_component chloroplast|GO:0009507|9618566|ISS  go_process cation transport|GO:0006812|11500563|ISS  go_process cation transport|GO:0006812||ISS  go_process response to zinc ion|GO:0010043|13129917|IEP  go_process response to copper ion|GO:0046688|13129917|IEP  go_function copper ion transmembrane transporter activity|GO:0005375|13129917|IGI  go_function cation transmembrane transporter activity|GO:0008324|11500563|ISS  go_function cation transmembrane transporter activity|GO:0008324||ISS  product ZIP4 (ZINC TRANSPORTER 4 PRECURSOR); cation transmembrane transporter/ copper ion transmembrane transporter  note ZINC TRANSPORTER 4 PRECURSOR (ZIP4); FUNCTIONS IN: cation transmembrane transporter activity, copper ion transmembrane transporter activity; INVOLVED IN: response to zinc ion, cation transport, response to copper ion; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal and plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: IRT3; cation transmembrane transporter/ metal ion transmembrane transporter (TAIR:AT1G60960.1); Has 1686 Blast hits to 1562 proteins in 262 species: Archae - 0; Bacteria - 227; Metazoa - 520; Fungi - 383; Plants - 321; Viruses - 0; Other Eukaryotes - 235 (source: NCBI BLink).  protein_id AT1G10970.1p  transcript_id AT1G10970.1  protein_id AT1G10970.1p  transcript_id AT1G10970.1  
At1g10980	chr1:003669592	0.0	C/3669592-3669821,3668395-3669319,3668096-3668194,3667877-3668007,3667531-3667696	AT1G10980.1  CDS  gene_syn T19D16.10, T19D16_10  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61670.1); Has 482 Blast hits to 481 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 255; Fungi - 99; Plants - 97; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT1G10980.1p  transcript_id AT1G10980.1  protein_id AT1G10980.1p  transcript_id AT1G10980.1  
At1g10990	chr1:003670513	0.0	C/3670513-3671091	AT1G10990.2  CDS  gene_syn T19D16.27, T19D16_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10990.2p  transcript_id AT1G10990.2  protein_id AT1G10990.2p  transcript_id AT1G10990.2  
At1g10990	chr1:003670980	0.0	C/3670980-3671091,3670513-3670901	AT1G10990.1  CDS  gene_syn T19D16.27, T19D16_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10990.1p  transcript_id AT1G10990.1  protein_id AT1G10990.1p  transcript_id AT1G10990.1  
At1g11000	chr1:003675784	0.0	C/3675784-3675909,3675358-3675415,3675048-3675268,3674840-3674956,3674466-3674526,3673929-3674020,3673717-3673791,3673486-3673571,3673320-3673369,3673188-3673228,3672922-3673095,3672794-3672829,3672637-3672704,3672500-3672560,3671935-3672390	AT1G11000.1  CDS  gene_syn ATMLO4, MILDEW RESISTANCE LOCUS O 4, MLO4, T19D16.26, T19D16_26  gene MLO4  function A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO4 belongs to the clade I, with AtMLO11 and AtMLO14. The gene is expressed during early seedling growth, in roots and lateral root primordia, in flower and fruit abscission zone, in vascular system of root, cotyledons and young leaves, it was not expressed in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).  go_component integral to membrane|GO:0016021||IEA  go_process cell death|GO:0008219||IEA  go_component plasma membrane|GO:0005886||ISS  go_process defense response|GO:0006952||ISS  go_process cell death|GO:0008219||ISS  go_function calmodulin binding|GO:0005516||ISS  product MLO4 (MILDEW RESISTANCE LOCUS O 4); calmodulin binding  note MILDEW RESISTANCE LOCUS O 4 (MLO4); FUNCTIONS IN: calmodulin binding; INVOLVED IN: cell death, defense response; LOCATED IN: integral to membrane, plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326); BEST Arabidopsis thaliana protein match is: MLO11 (MILDEW RESISTANCE LOCUS O 11); calmodulin binding (TAIR:AT5G53760.2); Has 285 Blast hits to 278 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 281; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G11000.1p  transcript_id AT1G11000.1  protein_id AT1G11000.1p  transcript_id AT1G11000.1  
At1g11010	chr1:003676607	0.0	W/3676607-3676644	AT1G11010.1  tRNA  gene_syn 60002.TRNA-MET-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Met (anticodon: CAT)  transcript_id AT1G11010.1  
At1g11020	chr1:003676968	0.0	W/3676968-3677429,3677733-3677856,3677971-3678350	AT1G11020.1  CDS  gene_syn T19D16.25, T19D16_25  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT2G22120.1); Has 933 Blast hits to 932 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 489; Fungi - 88; Plants - 163; Viruses - 11; Other Eukaryotes - 182 (source: NCBI BLink).  protein_id AT1G11020.1p  transcript_id AT1G11020.1  protein_id AT1G11020.1p  transcript_id AT1G11020.1  
At1g11030	chr1:003678775	0.0	C/3678775-3678848	AT1G11030.1  tRNA  gene_syn 60002.TRNA-ARG-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: TCG)  transcript_id AT1G11030.1  
At1g11040	chr1:003680787	0.0	C/3680787-3680924,3679750-3680477,3679225-3679675	AT1G11040.1  CDS  gene_syn T19D16.7, T19D16_7  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ chaperone C-terminal domain-containing protein  note DNAJ chaperone C-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ chaperone C-terminal domain-containing protein (TAIR:AT1G44160.1); Has 15570 Blast hits to 9499 proteins in 1732 species: Archae - 65; Bacteria - 4875; Metazoa - 2087; Fungi - 879; Plants - 457; Viruses - 36; Other Eukaryotes - 7171 (source: NCBI BLink).  protein_id AT1G11040.1p  transcript_id AT1G11040.1  protein_id AT1G11040.1p  transcript_id AT1G11040.1  
At1g11050	chr1:003681892	0.0	W/3681892-3683769	AT1G11050.1  CDS  gene_syn T19D16.6, T19D16_6  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3); kinase/ receptor signaling protein serine/threonine kinase (TAIR:AT2G48010.1); Has 83015 Blast hits to 82195 proteins in 3011 species: Archae - 51; Bacteria - 7345; Metazoa - 36417; Fungi - 6499; Plants - 18575; Viruses - 312; Other Eukaryotes - 13816 (source: NCBI BLink).  protein_id AT1G11050.1p  transcript_id AT1G11050.1  protein_id AT1G11050.1p  transcript_id AT1G11050.1  
At1g11055	chr1:003683919	0.0	C/3683919-3684095	AT1G11055.1  pseudogenic_transcript  pseudo  function Encodes a defensin-like (DEFL) family protein.  
At1g11060	chr1:003684568	0.0	W/3684568-3685193,3685688-3685787,3685921-3686260,3686457-3686569,3687025-3687153,3687294-3687387,3687489-3687593,3687702-3688321,3688425-3688678,3688859-3689006,3689099-3689196,3689283-3689364,3689454-3689537	AT1G11060.1  CDS  gene_syn T19D16.5, T19D16_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61030.1); Has 224 Blast hits to 176 proteins in 72 species: Archae - 0; Bacteria - 46; Metazoa - 133; Fungi - 8; Plants - 20; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G11060.1p  transcript_id AT1G11060.1  protein_id AT1G11060.1p  transcript_id AT1G11060.1  
At1g11070	chr1:003693622	0.0	C/3693622-3693648,3693196-3693510,3692731-3692826,3692530-3692653,3691462-3692434,3691225-3691390,3690915-3691133,3690406-3690624	AT1G11070.1  CDS  gene_syn T19D16.24, T19D16_24  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, flower, root, leaf; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT1G61080.1); Has 36868 Blast hits to 20071 proteins in 902 species: Archae - 56; Bacteria - 5524; Metazoa - 15168; Fungi - 3990; Plants - 6285; Viruses - 1561; Other Eukaryotes - 4284 (source: NCBI BLink).  protein_id AT1G11070.1p  transcript_id AT1G11070.1  protein_id AT1G11070.1p  transcript_id AT1G11070.1  
At1g11080	chr1:003697456	0.0	C/3697456-3697759,3697011-3697118,3696812-3696907,3696626-3696718,3696395-3696492,3695919-3696215,3695704-3695837,3695521-3695616,3695151-3695256,3694917-3695063	AT1G11080.1  CDS  gene_syn T19D16.4, T19D16_4, scpl31, serine carboxypeptidase-like 31  gene scpl31  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl31 (serine carboxypeptidase-like 31); serine-type carboxypeptidase  note serine carboxypeptidase-like 31 (scpl31); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: SCPL32 (SERINE CARBOXYPEPTIDASE-LIKE 32); serine-type carboxypeptidase (TAIR:AT1G61130.1); Has 2478 Blast hits to 2433 proteins in 263 species: Archae - 0; Bacteria - 97; Metazoa - 570; Fungi - 568; Plants - 896; Viruses - 0; Other Eukaryotes - 347 (source: NCBI BLink).  protein_id AT1G11080.1p  transcript_id AT1G11080.1  protein_id AT1G11080.1p  transcript_id AT1G11080.1  
At1g11090	chr1:003702655	0.0	W/3702655-3703629	AT1G11090.1  CDS  gene_syn T19D16.3, T19D16_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: esterase/lipase/thioesterase family protein (TAIR:AT2G39420.1); Has 2369 Blast hits to 2362 proteins in 633 species: Archae - 19; Bacteria - 1472; Metazoa - 122; Fungi - 94; Plants - 242; Viruses - 34; Other Eukaryotes - 386 (source: NCBI BLink).  protein_id AT1G11090.1p  transcript_id AT1G11090.1  protein_id AT1G11090.1p  transcript_id AT1G11090.1  
At1g11100	chr1:003709162	0.0	C/3709162-3709302,3708978-3709056,3708585-3708806,3707346-3708469,3706961-3707032,3706656-3706733,3706189-3706548,3705705-3706056,3705492-3705622,3705181-3705390,3704444-3705040,3704131-3704340,3703934-3704038	AT1G11100.1  CDS  gene_syn T19D16.2, T19D16_2  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function DNA binding|GO:0003677||ISS  go_function helicase activity|GO:0004386||ISS  go_function ATP binding|GO:0005524||ISS  product SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related  note SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related; FUNCTIONS IN: in 6 functions; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: EDA16 (embryo sac development arrest 16); ATP binding / DNA binding / helicase/ nucleic acid binding / protein binding / zinc ion binding (TAIR:AT1G61140.1); Has 16120 Blast hits to 9888 proteins in 923 species: Archae - 66; Bacteria - 3590; Metazoa - 4813; Fungi - 3465; Plants - 1070; Viruses - 132; Other Eukaryotes - 2984 (source: NCBI BLink).  protein_id AT1G11100.1p  transcript_id AT1G11100.1  protein_id AT1G11100.1p  transcript_id AT1G11100.1  
At1g11110	chr1:003710364	0.0	W/3710364-3710387,3710573-3710855,3710952-3711055,3711173-3711295,3711561-3711723,3711972-3712108	AT1G11110.1  CDS  gene_syn T19D16.23, T19D16_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif, subgroup (InterPro:IPR013720), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), CT11-RanBPM (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61150.6); Has 344 Blast hits to 344 proteins in 111 species: Archae - 0; Bacteria - 13; Metazoa - 162; Fungi - 58; Plants - 53; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT1G11110.1p  transcript_id AT1G11110.1  protein_id AT1G11110.1p  transcript_id AT1G11110.1  
At1g11112	chr1:003713220	0.0	C/3713220-3713456	AT1G11112.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11112.1p  transcript_id AT1G11112.1  protein_id AT1G11112.1p  transcript_id AT1G11112.1  
At1g11120	chr1:003715229	0.0	W/3715229-3715495,3717150-3717205,3718863-3719643	AT1G11120.1  CDS  gene_syn T19D16.22, T19D16_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61170.1); Has 197 Blast hits to 183 proteins in 47 species: Archae - 0; Bacteria - 2; Metazoa - 87; Fungi - 10; Plants - 68; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G11120.1p  transcript_id AT1G11120.1  protein_id AT1G11120.1p  transcript_id AT1G11120.1  
At1g11120	chr1:003715229	0.0	W/3715229-3715543,3717150-3717320	AT1G11120.2  CDS  gene_syn T19D16.22, T19D16_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09812.1).  protein_id AT1G11120.2p  transcript_id AT1G11120.2  protein_id AT1G11120.2p  transcript_id AT1G11120.2  
At1g11130	chr1:003723135	0.0	W/3723135-3723225,3723603-3723732,3723830-3723901,3724067-3724132,3724224-3724295,3724379-3724450,3724530-3724601,3724676-3724741,3724839-3724904,3724988-3725481,3725578-3725936,3726027-3726298,3726372-3726510,3726594-3726709,3726846-3727002,3727116-3727178	AT1G11130.1  CDS  gene_syn AT1G11140, SCM, SCRAMBLED, SRF9, STRUBBELIG, STRUBBELIG-RECEPTOR FAMILY 9, SUB, T19D16.8  gene SUB  function Encodes a receptor-like kinase protein with a predicted extracellular domain of six leucine-rich repeats and an intracellular serine-threonine kinase domain expressed throughout the developing root. Regulates expression of GLABRA2, CAPRICE, WEREWOLF, and ENHANCER OF GLABRA3.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|15618487|ISS  go_process signal transduction|GO:0007165|11751054|IC  go_process positive regulation of atrichoblast fate specification|GO:0010059|15618487|IMP  go_process positive regulation of trichoblast fate specification|GO:0010063|15618487|IMP  go_process floral organ development|GO:0048437|15951420|IMP  go_process ovule development|GO:0048481|15951420|IMP  go_function receptor signaling protein serine/threonine kinase activity|GO:0004702|15618487|ISS  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515|15618487|ISS  go_function protein binding|GO:0005515||ISS  product SUB (STRUBBELIG); protein binding / receptor signaling protein serine/threonine kinase  note STRUBBELIG (SUB); FUNCTIONS IN: protein binding, receptor signaling protein serine/threonine kinase activity; INVOLVED IN: signal transduction, positive regulation of trichoblast fate specification, ovule development, floral organ development, positive regulation of atrichoblast fate specification; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: SRF3 (STRUBBELIG-RECEPTOR FAMILY 3); ATP binding / kinase/ protein serine/threonine kinase (TAIR:AT4G03390.1); Has 105230 Blast hits to 73111 proteins in 1804 species: Archae - 57; Bacteria - 6302; Metazoa - 33592; Fungi - 5364; Plants - 46731; Viruses - 701; Other Eukaryotes - 12483 (source: NCBI BLink).  protein_id AT1G11130.1p  transcript_id AT1G11130.1  protein_id AT1G11130.1p  transcript_id AT1G11130.1  
At1g11145	chr1:003728116	0.0	C/3728116-3728166,3727712-3728044,3727532-3727636	AT1G11145.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF674 (InterPro:IPR007750); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01120.1); Has 20 Blast hits to 20 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11145.1p  transcript_id AT1G11145.1  protein_id AT1G11145.1p  transcript_id AT1G11145.1  
At1g11150	chr1:003728971	0.0	W/3728971-3731624	AT1G11150.1  mRNA_TE_gene  pseudo  gene_syn T28P6.22  note Transposable element gene, pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 30% identity and 3.2e-59 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}  
At1g11160	chr1:003733406	0.0	W/3733406-3733430,3733797-3733927,3734154-3734271,3734427-3734653,3734739-3734841,3734982-3735052,3735189-3735263,3735351-3735494,3735571-3735730,3736248-3736724,3736812-3737000,3737326-3737382,3737476-3738215,3738317-3738430,3738520-3738594,3738679-3738791,3738895-3739011,3739102-3739170,3739303-3739363	AT1G11160.1  CDS  gene_syn T28P6.17, T28P6_17  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function nucleotide binding|GO:0000166||ISS  product nucleotide binding  note nucleotide binding; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein / katanin p80 subunit, putative (TAIR:AT1G61210.1); Has 86310 Blast hits to 31762 proteins in 780 species: Archae - 60; Bacteria - 8010; Metazoa - 40974; Fungi - 16769; Plants - 8346; Viruses - 5; Other Eukaryotes - 12146 (source: NCBI BLink).  protein_id AT1G11160.1p  transcript_id AT1G11160.1  protein_id AT1G11160.1p  transcript_id AT1G11160.1  
At1g11170	chr1:003741724	0.0	W/3741724-3741804,3741903-3742004,3742086-3742121,3742203-3742313,3742404-3742487,3742577-3742695,3742896-3742997,3743072-3743188,3743270-3743335,3743423-3743489,3743580-3743633,3743794-3743886,3743984-3744010,3744113-3744148,3744238-3744459	AT1G11170.1  CDS  gene_syn T28P6.16, T28P6_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61240.4); Has 179 Blast hits to 179 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 174; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G11170.1p  transcript_id AT1G11170.1  protein_id AT1G11170.1p  transcript_id AT1G11170.1  
At1g11170	chr1:003741724	0.0	W/3741724-3741804,3741903-3742004,3742086-3742121,3742203-3742313,3742404-3742487,3742577-3742695,3742896-3742997,3743072-3743188,3743270-3743335,3743423-3743489,3743580-3743667,3743794-3743828	AT1G11170.2  CDS  gene_syn T28P6.16, T28P6_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61240.4); Has 175 Blast hits to 175 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G11170.2p  transcript_id AT1G11170.2  protein_id AT1G11170.2p  transcript_id AT1G11170.2  
At1g11175	chr1:003744858	0.0	W/3744858-3745655	AT1G11175.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G11175.1  
At1g11180	chr1:003745829	0.0	W/3745829-3745888,3746344-3746466,3746570-3746632,3746804-3746837,3746963-3747085,3747217-3747279,3747394-3747487,3747599-3747644,3747751-3747818,3747903-3747951,3748074-3748139,3748221-3748307	AT1G11180.1  CDS  gene_syn T28P6.15, T28P6_15  go_component integral to membrane|GO:0016021||IEA  go_process protein transport|GO:0015031||IEA  go_function transmembrane transporter activity|GO:0022857||ISS  product secretory carrier membrane protein (SCAMP) family protein  note secretory carrier membrane protein (SCAMP) family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273); BEST Arabidopsis thaliana protein match is: SC3 (SECRETORY CARRIER 3); transmembrane transporter (TAIR:AT1G61250.1); Has 511 Blast hits to 511 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 333; Fungi - 12; Plants - 121; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT1G11180.1p  transcript_id AT1G11180.1  protein_id AT1G11180.1p  transcript_id AT1G11180.1  
At1g11185	chr1:003749510	0.0	W/3749510-3750035	AT1G11185.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G11185.1  
At1g11190	chr1:003752571	0.0	C/3752571-3752696,3752115-3752295,3751898-3752005,3751720-3751775,3751534-3751617,3751354-3751449,3751219-3751283,3750667-3750740,3750338-3750465	AT1G11190.1  CDS  gene_syn BFN1, BIFUNCTIONAL NUCLEASE I, ENDO1, ENDONUCLEASE 1, T28P6.14, T28P6_14  gene BFN1  function Encodes a bifunctional nuclease that acts on both RNA and DNA involved in nucleic acid degradation to facilitate nucleotide and phosphate recovery during senescence. It has mismatch-specific endonuclease activity with wide recognition of single base mismatches as well as the ability to cleave indel types of mismatches (heteroduplexes with loops).  go_component endomembrane system|GO:0012505||IEA  go_process DNA catabolic process|GO:0006308||IEA  go_process DNA catabolic process|GO:0006308||ISS  go_function single-stranded DNA specific endodeoxyribonuclease activity|GO:0000014|10631260|IDA  go_function single-stranded DNA specific endodeoxyribonuclease activity|GO:0000014|17651368|IDA  go_function nucleic acid binding|GO:0003676||ISS  go_function endoribonuclease activity, producing 5 -phosphomonoesters|GO:0016891|10631260|IDA  go_function T/G mismatch-specific endonuclease activity|GO:0043765|17651368|IDA  product BFN1 (BIFUNCTIONAL NUCLEASE I); T/G mismatch-specific endonuclease/ endoribonuclease, producing 5 -phosphomonoesters / nucleic acid binding / single-stranded DNA specific endodeoxyribonuclease  note BIFUNCTIONAL NUCLEASE I (BFN1); FUNCTIONS IN: T/G mismatch-specific endonuclease activity, endoribonuclease activity, producing 5 -phosphomonoesters, single-stranded DNA specific endodeoxyribonuclease activity, nucleic acid binding; INVOLVED IN: DNA catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C/P1 nuclease, core (InterPro:IPR008947), S1/P1 nuclease (InterPro:IPR003154); BEST Arabidopsis thaliana protein match is: ENDO4 (endonuclease 4); T/G mismatch-specific endonuclease/ endonuclease/ nucleic acid binding / single-stranded DNA specific endodeoxyribonuclease (TAIR:AT4G21585.1); Has 563 Blast hits to 560 proteins in 149 species: Archae - 0; Bacteria - 133; Metazoa - 0; Fungi - 68; Plants - 78; Viruses - 4; Other Eukaryotes - 280 (source: NCBI BLink).  protein_id AT1G11190.1p  transcript_id AT1G11190.1  protein_id AT1G11190.1p  transcript_id AT1G11190.1  
At1g11200	chr1:003753896	0.0	W/3753896-3754162,3754267-3754680,3755253-3755459	AT1G11200.1  CDS  gene_syn T28P6.25  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF300 (InterPro:IPR005178); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21570.1); Has 593 Blast hits to 589 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 256; Fungi - 128; Plants - 126; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT1G11200.1p  transcript_id AT1G11200.1  protein_id AT1G11200.1p  transcript_id AT1G11200.1  
At1g11210	chr1:003756371	0.0	C/3756371-3756911,3755876-3756261	AT1G11210.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF761, plant (InterPro:IPR008480); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11220.1); Has 41 Blast hits to 41 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G11210.1p  transcript_id AT1G11210.1  protein_id AT1G11210.1p  transcript_id AT1G11210.1  
At1g11220	chr1:003760586	0.0	C/3760586-3761165,3760022-3760374	AT1G11220.1  CDS  gene_syn T28P6.12, T28P6_12  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, leaf whorl, embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF761, plant (InterPro:IPR008480); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11230.1); Has 48 Blast hits to 47 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11220.1p  transcript_id AT1G11220.1  protein_id AT1G11220.1p  transcript_id AT1G11220.1  
At1g11230	chr1:003763906	0.0	C/3763906-3764464,3763439-3763785	AT1G11230.1  CDS  gene_syn T28P6.11, T28P6_11  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF761, plant (InterPro:IPR008480); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11220.1); Has 39 Blast hits to 38 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11230.1p  transcript_id AT1G11230.1  protein_id AT1G11230.1p  transcript_id AT1G11230.1  
At1g11240	chr1:003768088	0.0	C/3768088-3768212,3767885-3767990,3767406-3767520,3766936-3767192	AT1G11240.1  CDS  gene_syn T28P6.24, T28P6_24  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 2452 Blast hits to 1845 proteins in 201 species: Archae - 0; Bacteria - 81; Metazoa - 1026; Fungi - 315; Plants - 107; Viruses - 18; Other Eukaryotes - 905 (source: NCBI BLink).  protein_id AT1G11240.1p  transcript_id AT1G11240.1  protein_id AT1G11240.1p  transcript_id AT1G11240.1  
At1g11250	chr1:003768724	0.0	W/3768724-3769187,3769274-3769706	AT1G11250.1  CDS  gene_syn ATSYP125, SYNTAXIN OF PLANTS 125, SYP125, T28P6.10, T28P6_10  gene SYP125  function member of SYP12 Gene Family  go_component membrane|GO:0016020||IEA  go_process intracellular protein transport|GO:0006886|11115874|TAS  go_process membrane fusion|GO:0006944|11115874|TAS  go_function SNAP receptor activity|GO:0005484|11115874|TAS  product SYP125 (SYNTAXIN OF PLANTS 125); SNAP receptor  note SYNTAXIN OF PLANTS 125 (SYP125); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion, intracellular protein transport; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: SYP124 (SYNTAXIN OF PLANTS 124); SNAP receptor (TAIR:AT1G61290.1); Has 1956 Blast hits to 1950 proteins in 213 species: Archae - 5; Bacteria - 33; Metazoa - 1005; Fungi - 317; Plants - 262; Viruses - 0; Other Eukaryotes - 334 (source: NCBI BLink).  protein_id AT1G11250.1p  transcript_id AT1G11250.1  protein_id AT1G11250.1p  transcript_id AT1G11250.1  
At1g11260	chr1:003777460	0.0	W/3777460-3777592,3777900-3778222,3778929-3779558,3779651-3780133	AT1G11260.1  CDS  gene_syn ATSTP1, STP1, SUGAR TRANSPORTER 1, T28P6.9, T28P6_9  gene STP1  function Encodes a H+/hexose cotransporter.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product STP1 (SUGAR TRANSPORTER 1); carbohydrate transmembrane transporter/ sugar:hydrogen symporter  note SUGAR TRANSPORTER 1 (STP1); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: nucleus, plasma membrane, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: carbohydrate transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT4G21480.1); Has 18848 Blast hits to 18448 proteins in 1170 species: Archae - 259; Bacteria - 7705; Metazoa - 3879; Fungi - 4540; Plants - 1379; Viruses - 2; Other Eukaryotes - 1084 (source: NCBI BLink).  protein_id AT1G11260.1p  transcript_id AT1G11260.1  protein_id AT1G11260.1p  transcript_id AT1G11260.1  
At1g11265	chr1:003781235	0.0	W/3781235-3785293	AT1G11265.1  mRNA_TE_gene  pseudo  gene_syn T28P6.8, T28P6_8  note Transposable element gene, copia-like retrotransposon family, has a 3.4e-253 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At1g11270	chr1:003785715	0.0	C/3785715-3786653	AT1G11270.1  CDS  gene_syn T28P6.23, T28P6_23  go_process heat acclimation|GO:0010286|16807682|IEP  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: heat acclimation; EXPRESSED IN: embryo, pedicel; EXPRESSED DURING: 4 anthesis, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527); BEST Arabidopsis thaliana protein match is: S locus F-box-related / SLF-related (TAIR:AT2G34280.1); Has 674 Blast hits to 664 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 672; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G11270.1p  transcript_id AT1G11270.1  protein_id AT1G11270.1p  transcript_id AT1G11270.1  
At1g11270	chr1:003785715	0.0	C/3785715-3786653	AT1G11270.2  CDS  gene_syn T28P6.23, T28P6_23  go_process heat acclimation|GO:0010286|16807682|IEP  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: heat acclimation; EXPRESSED IN: embryo, pedicel; EXPRESSED DURING: 4 anthesis, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527); BEST Arabidopsis thaliana protein match is: S locus F-box-related / SLF-related (TAIR:AT2G34280.1); Has 674 Blast hits to 664 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 672; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G11270.2p  transcript_id AT1G11270.2  protein_id AT1G11270.2p  transcript_id AT1G11270.2  
At1g11270	chr1:003785998	0.0	C/3785998-3786653,3785833-3785848	AT1G11270.3  CDS  gene_syn T28P6.23, T28P6_23  go_process heat acclimation|GO:0010286|16807682|IEP  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: heat acclimation; EXPRESSED IN: embryo, pedicel; EXPRESSED DURING: 4 anthesis, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: S locus F-box-related / SLF-related (TAIR:AT2G34280.1); Has 387 Blast hits to 386 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 385; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G11270.3p  transcript_id AT1G11270.3  protein_id AT1G11270.3p  transcript_id AT1G11270.3  
At1g11280	chr1:003789340	0.0	C/3789340-3790621,3789119-3789226,3788706-3788842,3788410-3788620,3788070-3788307,3787835-3787985,3787456-3787755	AT1G11280.3  CDS  gene_syn T28P6.7, T28P6_7  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product S-locus protein kinase, putative  note S-locus protein kinase, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-like, type 2 (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: SD1-29 (S-DOMAIN-1 29); carbohydrate binding / kinase/ protein kinase (TAIR:AT1G61380.1); Has 86449 Blast hits to 85173 proteins in 3033 species: Archae - 49; Bacteria - 7413; Metazoa - 37892; Fungi - 6582; Plants - 19557; Viruses - 392; Other Eukaryotes - 14564 (source: NCBI BLink).  protein_id AT1G11280.3p  transcript_id AT1G11280.3  protein_id AT1G11280.3p  transcript_id AT1G11280.3  
At1g11280	chr1:003789340	0.0	C/3789340-3790621,3789119-3789226,3788706-3788878,3788410-3788620,3788070-3788307,3787835-3787985,3787456-3787755	AT1G11280.2  CDS  gene_syn T28P6.7, T28P6_7  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product S-locus protein kinase, putative  note S-locus protein kinase, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-like, type 2 (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: S-locus protein kinase, putative (TAIR:AT1G61480.1); Has 86513 Blast hits to 85218 proteins in 3065 species: Archae - 49; Bacteria - 7411; Metazoa - 37927; Fungi - 6582; Plants - 19583; Viruses - 392; Other Eukaryotes - 14569 (source: NCBI BLink).  protein_id AT1G11280.2p  transcript_id AT1G11280.2  protein_id AT1G11280.2p  transcript_id AT1G11280.2  
At1g11280	chr1:003790725	0.0	C/3790725-3790728,3789340-3790647,3789119-3789226,3788706-3788842,3788410-3788620,3788070-3788307,3787835-3787985,3787456-3787755	AT1G11280.4  CDS  gene_syn T28P6.7, T28P6_7  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product S-locus protein kinase, putative  note S-locus protein kinase, putative; FUNCTIONS IN: in 7 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-like, type 2 (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: SD1-29 (S-DOMAIN-1 29); carbohydrate binding / kinase/ protein kinase (TAIR:AT1G61380.1); Has 86385 Blast hits to 85108 proteins in 2986 species: Archae - 49; Bacteria - 7413; Metazoa - 37821; Fungi - 6584; Plants - 19559; Viruses - 392; Other Eukaryotes - 14567 (source: NCBI BLink).  protein_id AT1G11280.4p  transcript_id AT1G11280.4  protein_id AT1G11280.4p  transcript_id AT1G11280.4  
At1g11280	chr1:003790725	0.0	C/3790725-3790728,3789340-3790647,3789119-3789226,3788706-3788878,3788410-3788620,3788070-3788307,3787835-3787985,3787456-3787755	AT1G11280.1  CDS  gene_syn T28P6.7, T28P6_7  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product S-locus protein kinase, putative  note S-locus protein kinase, putative; FUNCTIONS IN: in 7 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609), PAN-like, type 2 (InterPro:IPR013227), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: S-locus protein kinase, putative (TAIR:AT1G61480.1); Has 86509 Blast hits to 85214 proteins in 3061 species: Archae - 49; Bacteria - 7411; Metazoa - 37923; Fungi - 6582; Plants - 19583; Viruses - 392; Other Eukaryotes - 14569 (source: NCBI BLink).  protein_id AT1G11280.1p  transcript_id AT1G11280.1  protein_id AT1G11280.1p  transcript_id AT1G11280.1  
At1g11290	chr1:003791454	0.0	C/3791454-3793883	AT1G11290.1  CDS  gene_syn CHLORORESPIRATORY REDUCTION22, CRR22, T28P6.20, T28P6_20  gene CRR22  function Pentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity.  go_component chloroplast|GO:0009507|19182104|IDA  go_process mRNA modification|GO:0016556|19182104|IMP  go_function endonuclease activity|GO:0004519|19182104|IDA  product CRR22 (CHLORORESPIRATORY REDUCTION22); endonuclease  note CHLORORESPIRATORY REDUCTION22 (CRR22); FUNCTIONS IN: endonuclease activity; INVOLVED IN: mRNA modification; LOCATED IN: chloroplast; EXPRESSED IN: shoot, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G57430.1); Has 16928 Blast hits to 5346 proteins in 185 species: Archae - 1; Bacteria - 0; Metazoa - 157; Fungi - 84; Plants - 16293; Viruses - 0; Other Eukaryotes - 393 (source: NCBI BLink).  protein_id AT1G11290.1p  transcript_id AT1G11290.1  protein_id AT1G11290.1p  transcript_id AT1G11290.1  
At1g11300	chr1:003794389	0.0	W/3794389-3795676,3795766-3795873,3795955-3796133,3796218-3796428,3796511-3796748,3796829-3796958,3797038-3797341,3797737-3799056,3799147-3799254,3799336-3799514,3799586-3799796,3799880-3800117,3800202-3800331,3800411-3800719	AT1G11300.1  CDS  gene_syn T28P6.6, T28P6_6  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding  note ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding; FUNCTIONS IN: in 7 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-like, type 2 (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G11330.1); Has 178646 Blast hits to 89466 proteins in 3234 species: Archae - 98; Bacteria - 14908; Metazoa - 78094; Fungi - 14038; Plants - 40044; Viruses - 779; Other Eukaryotes - 30685 (source: NCBI BLink).  protein_id AT1G11300.1p  transcript_id AT1G11300.1  protein_id AT1G11300.1p  transcript_id AT1G11300.1  
At1g11310	chr1:003803748	0.0	C/3803748-3803870,3803502-3803559,3803121-3803386,3802911-3803027,3802757-3802817,3802523-3802686,3802345-3802439,3802209-3802258,3802082-3802122,3801829-3802002,3801703-3801738,3801546-3801617	AT1G11310.2  CDS  gene_syn ATMLO2, MILDEW RESISTANCE LOCUS O 2, MLO2, PMR2, POWDERY MILDEW RESISTANT 2, T28P6.4, T28P6_4  gene MLO2  function A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO2 belongs to the clade IV, with AtMLO3, AtMLO6 and AtMLO12. The gene is expressed during early seedling growth, in roots, in vascular system of cotyledons and young leaves,and in fruit abscission zone; it was not expressed in anthers and pollen, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). mlo resistance in A. thaliana does not involve the signaling molecules ethylene, jasmonic acid or salicylic acid, but requires a syntaxin, glycosyl hydrolase and ABC transporter.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|16525893|ISS  go_component plasma membrane|GO:0005886|16525893|TAS  go_component plasma membrane|GO:0005886||ISS  go_process defense response|GO:0006952||ISS  go_process cell death|GO:0008219||ISS  go_process response to fungus|GO:0009620|10677553|IMP  go_process defense response to fungus, incompatible interaction|GO:0009817|16732289|IMP  go_process negative regulation of defense response|GO:0031348|16732289|IMP  go_function calmodulin binding|GO:0005516||ISS  product MLO2 (MILDEW RESISTANCE LOCUS O 2); calmodulin binding  note MILDEW RESISTANCE LOCUS O 2 (MLO2); FUNCTIONS IN: calmodulin binding; INVOLVED IN: defense response to fungus, incompatible interaction, cell death, response to fungus, negative regulation of defense response, defense response; LOCATED IN: plasma membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326); BEST Arabidopsis thaliana protein match is: MLO6 (MILDEW RESISTANCE LOCUS O 6); calmodulin binding (TAIR:AT1G61560.1); Has 291 Blast hits to 285 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 287; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G11310.2p  transcript_id AT1G11310.2  protein_id AT1G11310.2p  transcript_id AT1G11310.2  
At1g11310	chr1:003803748	0.0	C/3803748-3803870,3803502-3803559,3803121-3803386,3802911-3803027,3802757-3802817,3802523-3802686,3802345-3802439,3802209-3802258,3802082-3802122,3801829-3802002,3801703-3801738,3801550-3801617,3801400-3801460,3800899-3801306	AT1G11310.1  CDS  gene_syn ATMLO2, MILDEW RESISTANCE LOCUS O 2, MLO2, PMR2, POWDERY MILDEW RESISTANT 2, T28P6.4, T28P6_4  gene MLO2  function A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO2 belongs to the clade IV, with AtMLO3, AtMLO6 and AtMLO12. The gene is expressed during early seedling growth, in roots, in vascular system of cotyledons and young leaves,and in fruit abscission zone; it was not expressed in anthers and pollen, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). mlo resistance in A. thaliana does not involve the signaling molecules ethylene, jasmonic acid or salicylic acid, but requires a syntaxin, glycosyl hydrolase and ABC transporter.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|16525893|ISS  go_component plasma membrane|GO:0005886|16525893|TAS  go_component plasma membrane|GO:0005886||ISS  go_process defense response|GO:0006952||ISS  go_process cell death|GO:0008219||ISS  go_process response to fungus|GO:0009620|10677553|IMP  go_process defense response to fungus, incompatible interaction|GO:0009817|16732289|IMP  go_process negative regulation of defense response|GO:0031348|16732289|IMP  go_function calmodulin binding|GO:0005516||ISS  product MLO2 (MILDEW RESISTANCE LOCUS O 2); calmodulin binding  note MILDEW RESISTANCE LOCUS O 2 (MLO2); FUNCTIONS IN: calmodulin binding; INVOLVED IN: defense response to fungus, incompatible interaction, cell death, response to fungus, negative regulation of defense response, defense response; LOCATED IN: plasma membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326); BEST Arabidopsis thaliana protein match is: MLO6 (MILDEW RESISTANCE LOCUS O 6); calmodulin binding (TAIR:AT1G61560.1); Has 305 Blast hits to 296 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 298; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G11310.1p  transcript_id AT1G11310.1  protein_id AT1G11310.1p  transcript_id AT1G11310.1  
At1g11320	chr1:003807241	0.0	W/3807241-3807351,3807463-3807930,3808033-3808728	AT1G11320.1  CDS  gene_syn T28P6.3, T28P6_3  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 24 Blast hits to 24 proteins in 7 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11320.1p  transcript_id AT1G11320.1  protein_id AT1G11320.1p  transcript_id AT1G11320.1  
At1g11330	chr1:003810372	0.0	W/3810372-3811689,3811784-3811891,3811985-3812172,3812259-3812469,3812568-3812805,3812876-3813026,3813108-3813416	AT1G11330.1  CDS  gene_syn T28P6.2, T28P6_2  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product S-locus lectin protein kinase family protein  note S-locus lectin protein kinase family protein; FUNCTIONS IN: in 7 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609), PAN-like, type 2 (InterPro:IPR013227), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: SD1-13 (S-DOMAIN-1 13); kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT1G11350.1); Has 89878 Blast hits to 88532 proteins in 3098 species: Archae - 51; Bacteria - 7508; Metazoa - 39090; Fungi - 7218; Plants - 20093; Viruses - 431; Other Eukaryotes - 15487 (source: NCBI BLink).  protein_id AT1G11330.1p  transcript_id AT1G11330.1  protein_id AT1G11330.1p  transcript_id AT1G11330.1  
At1g11340	chr1:003815946	0.0	C/3815946-3817420,3815672-3815791,3815387-3815588,3815072-3815282,3814737-3814974,3814514-3814658,3814116-3814430	AT1G11340.1  CDS  gene_syn T28P6.1, T28P6_1  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product S-locus lectin protein kinase family protein  note S-locus lectin protein kinase family protein; FUNCTIONS IN: in 7 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609), PAN-like, type 2 (InterPro:IPR013227), Serine/threonine protein kinase (InterPro:IPR002290), EGF-like, type 3 (InterPro:IPR000742), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: S-locus protein kinase, putative (TAIR:AT1G11410.1); Has 89014 Blast hits to 87577 proteins in 3317 species: Archae - 59; Bacteria - 7748; Metazoa - 38979; Fungi - 6745; Plants - 19965; Viruses - 403; Other Eukaryotes - 15115 (source: NCBI BLink).  protein_id AT1G11340.1p  transcript_id AT1G11340.1  protein_id AT1G11340.1p  transcript_id AT1G11340.1  
At1g11350	chr1:003819471	0.0	C/3819471-3820752,3819284-3819391,3819000-3819193,3818705-3818915,3818363-3818600,3818118-3818268,3817725-3818033	AT1G11350.1  CDS  gene_syn CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, CBRLK1, RKS2, S-DOMAIN-1 13, SD1-13, T23J18.2, T23J18_2  gene SD1-13  go_component plasma membrane|GO:0005886|19071125|IDA  go_process protein amino acid autophosphorylation|GO:0046777|18552232|IDA  go_function protein kinase activity|GO:0004672|18552232|IDA  go_function protein serine/threonine kinase activity|GO:0004674|19071125|IDA  go_function kinase activity|GO:0016301||ISS  product SD1-13 (S-DOMAIN-1 13); kinase/ protein kinase/ protein serine/threonine kinase  note S-DOMAIN-1 13 (SD1-13); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity; INVOLVED IN: protein amino acid autophosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), PAN-like, type 2 (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G11330.1); Has 90493 Blast hits to 89330 proteins in 3120 species: Archae - 55; Bacteria - 7697; Metazoa - 39169; Fungi - 7284; Plants - 20161; Viruses - 423; Other Eukaryotes - 15704 (source: NCBI BLink).  protein_id AT1G11350.1p  transcript_id AT1G11350.1  protein_id AT1G11350.1p  transcript_id AT1G11350.1  
At1g11360	chr1:003822171	0.0	C/3822171-3822899	AT1G11360.1  CDS  gene_syn T23J18.35, T23J18_35  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to stress|GO:0006950||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_process response to stress|GO:0006950||ISS  product universal stress protein (USP) family protein  note universal stress protein (USP) family protein; INVOLVED IN: response to stress; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: universal stress protein (USP) family protein (TAIR:AT5G54430.1); Has 714 Blast hits to 713 proteins in 147 species: Archae - 6; Bacteria - 231; Metazoa - 42; Fungi - 27; Plants - 403; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G11360.1p  transcript_id AT1G11360.1  protein_id AT1G11360.1p  transcript_id AT1G11360.1  
At1g11360	chr1:003822171	0.0	C/3822171-3822899	AT1G11360.2  CDS  gene_syn T23J18.35, T23J18_35  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to stress|GO:0006950||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_process response to stress|GO:0006950||ISS  product universal stress protein (USP) family protein  note universal stress protein (USP) family protein; INVOLVED IN: response to stress; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), UspA (InterPro:IPR006016), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: universal stress protein (USP) family protein (TAIR:AT5G54430.1); Has 714 Blast hits to 713 proteins in 147 species: Archae - 6; Bacteria - 231; Metazoa - 42; Fungi - 27; Plants - 403; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G11360.2p  transcript_id AT1G11360.2  protein_id AT1G11360.2p  transcript_id AT1G11360.2  
At1g11360	chr1:003822171	0.0	C/3822171-3822899	AT1G11360.3  CDS  gene_syn T23J18.35, T23J18_35  go_process response to stress|GO:0006950||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_process response to stress|GO:0006950||ISS  product universal stress protein (USP) family protein  note universal stress protein (USP) family protein; INVOLVED IN: response to stress; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), UspA (InterPro:IPR006016), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: universal stress protein (USP) family protein (TAIR:AT5G54430.1).  protein_id AT1G11360.3p  transcript_id AT1G11360.3  protein_id AT1G11360.3p  transcript_id AT1G11360.3  
At1g11362	chr1:003824630	0.0	C/3824630-3825184	AT1G11362.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  product enzyme inhibitor/ pectinesterase  note enzyme inhibitor/ pectinesterase; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: enzyme inhibitor/ pectinesterase (TAIR:AT1G50325.1); Has 51 Blast hits to 49 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11362.1p  transcript_id AT1G11362.1  protein_id AT1G11362.1p  transcript_id AT1G11362.1  
At1g11370	chr1:003830832	0.0	C/3830832-3830945,3829970-3830234,3828098-3828585	AT1G11370.1  CDS  gene_syn T23J18.3, T23J18_3  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: PMEPCRA (METHYLESTERASE PCR A); enzyme inhibitor/ pectinesterase (TAIR:AT1G11580.1); Has 1235 Blast hits to 1206 proteins in 175 species: Archae - 2; Bacteria - 252; Metazoa - 1; Fungi - 128; Plants - 852; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11370.1p  transcript_id AT1G11370.1  protein_id AT1G11370.1p  transcript_id AT1G11370.1  
At1g11380	chr1:003832695	0.0	W/3832695-3833008,3833167-3833230,3833338-3833502,3833609-3833674,3833766-3833921	AT1G11380.1  CDS  gene_syn T23J18.4, T23J18_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05350.1); Has 187 Blast hits to 186 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 8; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11380.1p  transcript_id AT1G11380.1  protein_id AT1G11380.1p  transcript_id AT1G11380.1  
At1g11390	chr1:003837298	0.0	C/3837298-3837305,3835750-3837076,3835406-3835669,3835127-3835282,3834762-3834881	AT1G11390.1  CDS  gene_syn T23J18.5, T23J18_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ABC1 family protein  note ABC1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ABC1 family protein (TAIR:AT1G61640.1); Has 6866 Blast hits to 6818 proteins in 1101 species: Archae - 67; Bacteria - 2611; Metazoa - 374; Fungi - 362; Plants - 325; Viruses - 14; Other Eukaryotes - 3113 (source: NCBI BLink).  protein_id AT1G11390.1p  transcript_id AT1G11390.1  protein_id AT1G11390.1p  transcript_id AT1G11390.1  
At1g11400	chr1:003838777	0.0	W/3838777-3838959,3839227-3839340,3839422-3839610,3839850-3839978	AT1G11400.1  CDS  gene_syn PYM, Partner of Y14-Mago, T23J18.7, T23J18_7  gene PYM  function The PYM gene encodes a protein capable of interacting with MAGO, and Y14, whose orthologs form part of the exon junction complex in animal cells. In vitro binding assays indicate that PYM can bind to MAGO and Y14 either individually, or when they are together. But, MAGO-Y14-PYM ternary complexes are difficult to detect in vivo in Arabidopsis based on pull-down experiments. However there is some evidence for a weak association in Arabidopsis flowers. PYM appears primarily cytoplasmic, but it also seems to into the nucleus at times. Its nuclear localization signal has not been rigorously defined, but there is evidence for a nuclear export signal between amino acids 171-205 in the C-terminus.  go_component nucleoplasm|GO:0005654|16953428|IDA  go_component nucleolus|GO:0005730|16953428|IDA  go_component cytoplasm|GO:0005737|16953428|IDA  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515|16953428|IPI  product PYM (Partner of Y14-Mago); protein binding  note Partner of Y14-Mago (PYM); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleoplasm, nucleolus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Exon junction complex, Pym (InterPro:IPR015362); Has 257 Blast hits to 257 proteins in 99 species: Archae - 0; Bacteria - 2; Metazoa - 133; Fungi - 80; Plants - 28; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G11400.1p  transcript_id AT1G11400.1  protein_id AT1G11400.1p  transcript_id AT1G11400.1  
At1g11400	chr1:003838777	0.0	W/3838777-3838959,3839227-3839340,3839422-3839610,3839850-3839978	AT1G11400.2  CDS  gene_syn PYM, Partner of Y14-Mago, T23J18.7, T23J18_7  gene PYM  function The PYM gene encodes a protein capable of interacting with MAGO, and Y14, whose orthologs form part of the exon junction complex in animal cells. In vitro binding assays indicate that PYM can bind to MAGO and Y14 either individually, or when they are together. But, MAGO-Y14-PYM ternary complexes are difficult to detect in vivo in Arabidopsis based on pull-down experiments. However there is some evidence for a weak association in Arabidopsis flowers. PYM appears primarily cytoplasmic, but it also seems to into the nucleus at times. Its nuclear localization signal has not been rigorously defined, but there is evidence for a nuclear export signal between amino acids 171-205 in the C-terminus.  go_component nucleoplasm|GO:0005654|16953428|IDA  go_component nucleolus|GO:0005730|16953428|IDA  go_component cytoplasm|GO:0005737|16953428|IDA  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515|16953428|IPI  product PYM (Partner of Y14-Mago); protein binding  note Partner of Y14-Mago (PYM); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleoplasm, nucleolus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Exon junction complex, Pym (InterPro:IPR015362); Has 257 Blast hits to 257 proteins in 99 species: Archae - 0; Bacteria - 2; Metazoa - 133; Fungi - 80; Plants - 28; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G11400.2p  transcript_id AT1G11400.2  protein_id AT1G11400.2p  transcript_id AT1G11400.2  
At1g11400	chr1:003838777	0.0	W/3838777-3838959,3839227-3839340,3839422-3839610,3839850-3839978	AT1G11400.3  CDS  gene_syn PYM, Partner of Y14-Mago, T23J18.7, T23J18_7  gene PYM  function The PYM gene encodes a protein capable of interacting with MAGO, and Y14, whose orthologs form part of the exon junction complex in animal cells. In vitro binding assays indicate that PYM can bind to MAGO and Y14 either individually, or when they are together. But, MAGO-Y14-PYM ternary complexes are difficult to detect in vivo in Arabidopsis based on pull-down experiments. However there is some evidence for a weak association in Arabidopsis flowers. PYM appears primarily cytoplasmic, but it also seems to into the nucleus at times. Its nuclear localization signal has not been rigorously defined, but there is evidence for a nuclear export signal between amino acids 171-205 in the C-terminus.  go_component nucleoplasm|GO:0005654|16953428|IDA  go_component nucleolus|GO:0005730|16953428|IDA  go_component cytoplasm|GO:0005737|16953428|IDA  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515|16953428|IPI  product PYM (Partner of Y14-Mago); protein binding  note Partner of Y14-Mago (PYM); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleoplasm, nucleolus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Exon junction complex, Pym (InterPro:IPR015362); Has 257 Blast hits to 257 proteins in 99 species: Archae - 0; Bacteria - 2; Metazoa - 133; Fungi - 80; Plants - 28; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G11400.3p  transcript_id AT1G11400.3  protein_id AT1G11400.3p  transcript_id AT1G11400.3  
At1g11410	chr1:003841286	0.0	W/3841286-3842565,3842654-3842782,3842882-3843285,3843391-3843628,3843720-3843864,3843958-3844284	AT1G11410.1  CDS  gene_syn T23J18.8, T23J18_8  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product S-locus protein kinase, putative  note S-locus protein kinase, putative; FUNCTIONS IN: in 7 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609), PAN-like, type 2 (InterPro:IPR013227), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), EGF-like, type 3 (InterPro:IPR000742), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G11340.1); Has 88143 Blast hits to 86790 proteins in 3328 species: Archae - 53; Bacteria - 7715; Metazoa - 38620; Fungi - 6632; Plants - 19718; Viruses - 411; Other Eukaryotes - 14994 (source: NCBI BLink).  protein_id AT1G11410.1p  transcript_id AT1G11410.1  protein_id AT1G11410.1p  transcript_id AT1G11410.1  
At1g11420	chr1:003846438	0.0	C/3846438-3846872,3845944-3846345,3845752-3845838,3845543-3845662,3845391-3845475,3844581-3845266	AT1G11420.1  CDS  gene_syn T23J18.9, T23J18_9  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  product agenet domain-containing protein  note agenet domain-containing protein; FUNCTIONS IN: RNA binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein (TAIR:AT2G47230.1); Has 429 Blast hits to 385 proteins in 73 species: Archae - 17; Bacteria - 23; Metazoa - 136; Fungi - 17; Plants - 161; Viruses - 1; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT1G11420.1p  transcript_id AT1G11420.1  protein_id AT1G11420.1p  transcript_id AT1G11420.1  
At1g11430	chr1:003847273	0.0	W/3847273-3847634,3848411-3848508,3848606-3848671,3848766-3848938	AT1G11430.1  CDS  gene_syn T23J18.10, T23J18_10  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  product plastid developmental protein DAG, putative  note plastid developmental protein DAG, putative; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: plastid developmental protein DAG, putative (TAIR:AT3G06790.2); Has 147 Blast hits to 135 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11430.1p  transcript_id AT1G11430.1  protein_id AT1G11430.1p  transcript_id AT1G11430.1  
At1g11440	chr1:003849418	0.0	W/3849418-3850509	AT1G11440.1  CDS  gene_syn T23J18.11, T23J18_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G29075.1); Has 22740 Blast hits to 8622 proteins in 417 species: Archae - 22; Bacteria - 573; Metazoa - 11353; Fungi - 2147; Plants - 905; Viruses - 631; Other Eukaryotes - 7109 (source: NCBI BLink).  protein_id AT1G11440.1p  transcript_id AT1G11440.1  protein_id AT1G11440.1p  transcript_id AT1G11440.1  
At1g11450	chr1:003853470	0.0	W/3853470-3853519,3853758-3853820,3853995-3854111,3854342-3854741,3854870-3855021,3855136-3855259	AT1G11450.2  CDS  gene_syn T23J18.12, T23J18_12  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  product nodulin MtN21 family protein  note nodulin MtN21 family protein; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT1G11460.1); Has 1077 Blast hits to 1068 proteins in 143 species: Archae - 11; Bacteria - 396; Metazoa - 4; Fungi - 4; Plants - 622; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT1G11450.2p  transcript_id AT1G11450.2  protein_id AT1G11450.2p  transcript_id AT1G11450.2  
At1g11450	chr1:003854005	0.0	W/3854005-3854111,3854342-3854741,3854870-3855021,3855136-3855259	AT1G11450.1  CDS  gene_syn T23J18.12, T23J18_12  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  product nodulin MtN21 family protein  note nodulin MtN21 family protein; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT1G11460.1); Has 865 Blast hits to 858 proteins in 86 species: Archae - 4; Bacteria - 232; Metazoa - 4; Fungi - 0; Plants - 610; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G11450.1p  transcript_id AT1G11450.1  protein_id AT1G11450.1p  transcript_id AT1G11450.1  
At1g11460	chr1:003857005	0.0	W/3857005-3857207,3857370-3857432,3857595-3857711,3858222-3858624,3858916-3859067,3859193-3859268	AT1G11460.1  CDS  gene_syn T23J18.13, T23J18_13  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  product nodulin MtN21 family protein  note nodulin MtN21 family protein; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT1G01070.1); Has 1259 Blast hits to 1247 proteins in 176 species: Archae - 13; Bacteria - 459; Metazoa - 4; Fungi - 0; Plants - 632; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).  protein_id AT1G11460.1p  transcript_id AT1G11460.1  protein_id AT1G11460.1p  transcript_id AT1G11460.1  
At1g11470	chr1:003860378	0.0	C/3860378-3860522,3860227-3860288,3859874-3860119	AT1G11470.1  CDS  gene_syn T23J18.14, T23J18_14  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G02370.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11470.1p  transcript_id AT1G11470.1  protein_id AT1G11470.1p  transcript_id AT1G11470.1  
At1g11475	chr1:003862520	0.0	W/3862520-3862555,3862759-3862817,3863584-3863678,3863780-3863805	AT1G11475.1  CDS  gene_syn NRPB10, NRPD10, NRPE10, T23J18.30  gene NRPB10  function Non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB10.  go_process transcription|GO:0006350||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_component DNA-directed RNA polymerase IV complex|GO:0000418|19110459|IPI  go_component DNA-directed RNA polymerase II, core complex|GO:0005665|19110459|IPI  go_component DNA-directed RNA polymerase V complex|GO:0080137|19110459|IPI  go_process transcription|GO:0006350||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product NRPB10; DNA binding / DNA-directed RNA polymerase  note NRPB10; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription, regulation of transcription; LOCATED IN: DNA-directed RNA polymerase V complex, DNA-directed RNA polymerase II, core complex, DNA-directed RNA polymerase IV complex; CONTAINS InterPro DOMAIN/s: RNA polymerases, N/8 Kd subunits (InterPro:IPR000268), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase II, putative (RPB10) (TAIR:AT1G61700.1); Has 709 Blast hits to 709 proteins in 230 species: Archae - 167; Bacteria - 0; Metazoa - 123; Fungi - 120; Plants - 39; Viruses - 0; Other Eukaryotes - 260 (source: NCBI BLink).  protein_id AT1G11475.1p  transcript_id AT1G11475.1  protein_id AT1G11475.1p  transcript_id AT1G11475.1  
At1g11480	chr1:003866655	0.0	C/3866655-3866707,3865529-3866435,3865256-3865434,3865100-3865136,3864953-3865014,3864368-3864827	AT1G11480.2  CDS  gene_syn T23J18.15, T23J18_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product eukaryotic translation initiation factor-related  note eukaryotic translation initiation factor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 311 Blast hits to 289 proteins in 88 species: Archae - 0; Bacteria - 13; Metazoa - 160; Fungi - 45; Plants - 34; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT1G11480.2p  transcript_id AT1G11480.2  protein_id AT1G11480.2p  transcript_id AT1G11480.2  
At1g11480	chr1:003866659	0.0	C/3866659-3866750,3865529-3866435,3865256-3865434,3865100-3865136,3864953-3865014,3864368-3864827	AT1G11480.1  CDS  gene_syn T23J18.15, T23J18_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product eukaryotic translation initiation factor-related  note eukaryotic translation initiation factor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 308 Blast hits to 286 proteins in 90 species: Archae - 0; Bacteria - 15; Metazoa - 157; Fungi - 47; Plants - 34; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT1G11480.1p  transcript_id AT1G11480.1  protein_id AT1G11480.1p  transcript_id AT1G11480.1  
At1g11482	chr1:003867405	0.0	C/3867405-3868870	AT1G11482.1  pseudogenic_transcript  pseudo  function unknown pseudogene  
At1g11490	chr1:003869612	0.0	C/3869612-3870065,3868884-3869527	AT1G11490.1  CDS  gene_syn T23J18.16, T23J18_16  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT4G27240.1); Has 116 Blast hits to 115 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 13; Plants - 103; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11490.1p  transcript_id AT1G11490.1  protein_id AT1G11490.1p  transcript_id AT1G11490.1  
At1g11500	chr1:003870833	0.0	W/3870833-3870931,3871018-3871244,3871342-3871570	AT1G11500.1  CDS  gene_syn T23J18.31, T23J18_31  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21310.1); Has 50 Blast hits to 50 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11500.1p  transcript_id AT1G11500.1  protein_id AT1G11500.1p  transcript_id AT1G11500.1  
At1g11510	chr1:003871778	0.0	C/3871778-3872836	AT1G11510.1  CDS  gene_syn T23J18.17, T23J18_17  go_function transcription regulator activity|GO:0030528|12535344|TAS  product DNA-binding storekeeper protein-related  note DNA-binding storekeeper protein-related; FUNCTIONS IN: transcription regulator activity; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related (TAIR:AT1G61730.1); Has 5628 Blast hits to 2349 proteins in 225 species: Archae - 0; Bacteria - 3367; Metazoa - 810; Fungi - 347; Plants - 321; Viruses - 20; Other Eukaryotes - 763 (source: NCBI BLink).  protein_id AT1G11510.1p  transcript_id AT1G11510.1  protein_id AT1G11510.1p  transcript_id AT1G11510.1  
At1g11520	chr1:003873029	0.0	W/3873029-3873619	AT1G11520.1  CDS  gene_syn T23J18.18, T23J18_18  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pliceosome associated protein-related  note pliceosome associated protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: proline-rich spliceosome-associated (PSP) family protein (TAIR:AT4G21660.1); Has 110 Blast hits to 105 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 82; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G11520.1p  transcript_id AT1G11520.1  protein_id AT1G11520.1p  transcript_id AT1G11520.1  
At1g11530	chr1:003874518	0.0	W/3874518-3874595,3874872-3874994,3875156-3875311	AT1G11530.1  CDS  gene_syn ATCXXS1, C-terminal cysteine residue is changed to a serine 1  gene ATCXXS1  function Encodes a monocysteinic thioredoxin, thioredoxin in which the second cysteine of the redox site is replaced by a serine, with low disulfide reductase but efficient disulfide isomerase activity.  go_component cytosol|GO:0005829|18384502|IDA  go_process protein thiol-disulfide exchange|GO:0006467|18384502|IDA  go_process protein amino acid deglutathionylation|GO:0080058|18384502|IDA  go_function protein disulfide isomerase activity|GO:0003756|18384502|IDA  product ATCXXS1 (C-terminal cysteine residue is changed to a serine 1); protein disulfide isomerase  note C-terminal cysteine residue is changed to a serine 1 (ATCXXS1); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: protein thiol-disulfide exchange, protein amino acid deglutathionylation; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336), Thioredoxin domain (InterPro:IPR013766); BEST Arabidopsis thaliana protein match is: ATTRX1; oxidoreductase, acting on sulfur group of donors, disulfide as acceptor (TAIR:AT3G51030.1); Has 5987 Blast hits to 5981 proteins in 1310 species: Archae - 93; Bacteria - 2585; Metazoa - 818; Fungi - 404; Plants - 683; Viruses - 0; Other Eukaryotes - 1404 (source: NCBI BLink).  protein_id AT1G11530.1p  transcript_id AT1G11530.1  protein_id AT1G11530.1p  transcript_id AT1G11530.1  
At1g11540	chr1:003876470	0.0	C/3876470-3876973,3876116-3876265,3875880-3876020,3875476-3875784	AT1G11540.1  CDS  gene_syn T23J18.20, T23J18_20  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61740.1); Has 2289 Blast hits to 2138 proteins in 447 species: Archae - 89; Bacteria - 1004; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 1109 (source: NCBI BLink).  protein_id AT1G11540.1p  transcript_id AT1G11540.1  protein_id AT1G11540.1p  transcript_id AT1G11540.1  
At1g11545	chr1:003880082	0.0	C/3880082-3880286,3879809-3879909,3879508-3879710,3878689-3879097	AT1G11545.1  CDS  gene_syn T23J18.21, T23J18_21  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process cellular glucan metabolic process|GO:0006073||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762||IEA  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative  note xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16, active site (InterPro:IPR008263), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative (TAIR:AT5G65730.1); Has 1331 Blast hits to 1325 proteins in 205 species: Archae - 0; Bacteria - 180; Metazoa - 0; Fungi - 272; Plants - 798; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).  protein_id AT1G11545.1p  transcript_id AT1G11545.1  protein_id AT1G11545.1p  transcript_id AT1G11545.1  
At1g11550	chr1:003881529	0.0	W/3881529-3881608	AT1G11550.1  tRNA  gene_syn 51678.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: TAG)  transcript_id AT1G11550.1  
At1g11560	chr1:003881788	0.0	W/3881788-3882819	AT1G11560.1  CDS  gene_syn T23J18.22, T23J18_22  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function oligosaccharide transmembrane transporter activity|GO:0015157||ISS  product OST3/OST6 family protein  note OST3/OST6 family protein; FUNCTIONS IN: oligosaccharide transmembrane transporter activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: OST3/OST6 (InterPro:IPR006844); BEST Arabidopsis thaliana protein match is: OST3/OST6 family protein (TAIR:AT1G61790.1); Has 204 Blast hits to 204 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 134; Fungi - 22; Plants - 34; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G11560.1p  transcript_id AT1G11560.1  protein_id AT1G11560.1p  transcript_id AT1G11560.1  
At1g11570	chr1:003883280	0.0	W/3883280-3883603,3883882-3883956	AT1G11570.2  CDS  gene_syn NTF2-like, NTL, T23J18.32, T23J18_32  gene NTL  go_component intracellular|GO:0005622||IEA  go_process transport|GO:0006810||IEA  go_component intracellular|GO:0005622||ISS  go_component nucleus|GO:0005634||ISS  go_process protein import into nucleus|GO:0006606||ISS  go_function protein transporter activity|GO:0008565||ISS  product nuclear transport factor 2 (NTF2), putative  note NTF2-like (NTL); FUNCTIONS IN: protein transporter activity; INVOLVED IN: transport, protein import into nucleus; LOCATED IN: nucleus, intracellular; EXPRESSED IN: sperm cell, leaf whorl, pedicel, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222); BEST Arabidopsis thaliana protein match is: NTF2B (NUCLEAR TRANSPORT FACTOR 2B); Ran GTPase binding / protein transporter (TAIR:AT1G27970.1).  protein_id AT1G11570.2p  transcript_id AT1G11570.2  protein_id AT1G11570.2p  transcript_id AT1G11570.2  
At1g11570	chr1:003883280	0.0	W/3883280-3883663	AT1G11570.1  CDS  gene_syn NTF2-like, NTL, T23J18.32, T23J18_32  gene NTL  go_component intracellular|GO:0005622||IEA  go_process transport|GO:0006810||IEA  go_component intracellular|GO:0005622||ISS  go_component nucleus|GO:0005634||ISS  go_process protein import into nucleus|GO:0006606||ISS  go_function protein transporter activity|GO:0008565||ISS  product nuclear transport factor 2 (NTF2), putative  note NTF2-like (NTL); FUNCTIONS IN: protein transporter activity; INVOLVED IN: transport, protein import into nucleus; LOCATED IN: nucleus, intracellular; EXPRESSED IN: sperm cell, leaf whorl, pedicel, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222); BEST Arabidopsis thaliana protein match is: NTF2B (NUCLEAR TRANSPORT FACTOR 2B); Ran GTPase binding / protein transporter (TAIR:AT1G27970.2); Has 643 Blast hits to 643 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 413; Fungi - 109; Plants - 66; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT1G11570.1p  transcript_id AT1G11570.1  protein_id AT1G11570.1p  transcript_id AT1G11570.1  
At1g11572	chr1:003884455	0.0	W/3884455-3884724	AT1G11572.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 5 Blast hits to 5 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11572.1p  transcript_id AT1G11572.1  protein_id AT1G11572.1p  transcript_id AT1G11572.1  
At1g11580	chr1:003888730	0.0	W/3888730-3889446,3889601-3889865,3889958-3890649	AT1G11580.1  CDS  gene_syn ATPMEPCRA, METHYLESTERASE PCR A, PMEPCRA, T23J18.24, T23J18_24  gene PMEPCRA  go_component cell wall|GO:0005618|14595688|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product PMEPCRA (METHYLESTERASE PCR A); enzyme inhibitor/ pectinesterase  note METHYLESTERASE PCR A (PMEPCRA); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectin methylesterase, putative (TAIR:AT1G11590.1); Has 1499 Blast hits to 1465 proteins in 271 species: Archae - 0; Bacteria - 420; Metazoa - 1; Fungi - 132; Plants - 945; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G11580.1p  transcript_id AT1G11580.1  protein_id AT1G11580.1p  transcript_id AT1G11580.1  
At1g11590	chr1:003892634	0.0	W/3892634-3893257,3893563-3893827,3893935-3894620	AT1G11590.1  CDS  gene_syn T23J18.25, T23J18_25  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectin methylesterase, putative  note pectin methylesterase, putative; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase inhibitor (InterPro:IPR006501), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: enzyme inhibitor/ pectinesterase (TAIR:AT4G03930.1); Has 1373 Blast hits to 1344 proteins in 245 species: Archae - 0; Bacteria - 375; Metazoa - 1; Fungi - 129; Plants - 866; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G11590.1p  transcript_id AT1G11590.1  protein_id AT1G11590.1p  transcript_id AT1G11590.1  
At1g11592	chr1:003895179	0.0	C/3895179-3896917	AT1G11592.2  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G11592.2  
At1g11592	chr1:003895268	0.0	C/3895268-3896934	AT1G11592.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G11592.1  
At1g11593	chr1:003898002	0.0	W/3898002-3898571	AT1G11593.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  product enzyme inhibitor/ pectinesterase  note enzyme inhibitor/ pectinesterase; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: enzyme inhibitor/ pectinesterase (TAIR:AT3G27999.1).  protein_id AT1G11593.1p  transcript_id AT1G11593.1  protein_id AT1G11593.1p  transcript_id AT1G11593.1  
At1g11595	chr1:003898631	0.0	W/3898631-3899699	AT1G11595.1  pseudogenic_transcript  pseudo  gene_syn T23J18.28  note pseudogene, putative glucose 6 phosphate/phosphate translocator, blastp match of 60% identity and 2.3e-78 P-value to GP|2997593|gb|AAC08526.1||AF020816 glucose-6-phosphate/phosphate-translocator precursor {Solanum tuberosum}  
At1g11600	chr1:003902090	0.0	W/3902090-3903622	AT1G11600.1  CDS  gene_syn CYP77B1, CYTOCHROME P450, FAMILY 77, SUBFAMILY B, POLYPEPTIDE 1, F25C20.25, F25C20_25  gene CYP77B1  function member of CYP77B  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP77B1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP77B1; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP77A4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT5G04660.1); Has 23104 Blast hits to 22770 proteins in 1217 species: Archae - 21; Bacteria - 1875; Metazoa - 10502; Fungi - 4282; Plants - 5557; Viruses - 3; Other Eukaryotes - 864 (source: NCBI BLink).  protein_id AT1G11600.1p  transcript_id AT1G11600.1  protein_id AT1G11600.1p  transcript_id AT1G11600.1  
At1g11608	chr1:003906266	0.0	W/3906266-3906520	AT1G11608.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated (InterPro:IPR006527); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G11620.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11608.1p  transcript_id AT1G11608.1  protein_id AT1G11608.1p  transcript_id AT1G11608.1  
At1g11610	chr1:003908905	0.0	C/3908905-3909291,3908260-3908751,3907885-3908169,3907461-3907790	AT1G11610.1  CDS  gene_syn CYP71A18, CYTOCHROME P450, FAMILY 71, SUBFAMILY A, POLYPEPTIDE 18, F25C20.24, F25C20_24  gene CYP71A18  function putative cytochrome P450  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71A18; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71A18; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP71A12 (cytochrome P450, family 71, subfamily A, polypeptide 12); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT2G30750.1); Has 24321 Blast hits to 24182 proteins in 1288 species: Archae - 21; Bacteria - 2578; Metazoa - 10306; Fungi - 4609; Plants - 5854; Viruses - 3; Other Eukaryotes - 950 (source: NCBI BLink).  protein_id AT1G11610.1p  transcript_id AT1G11610.1  protein_id AT1G11610.1p  transcript_id AT1G11610.1  
At1g11620	chr1:003910833	0.0	W/3910833-3911924	AT1G11620.1  CDS  gene_syn F25C20.23, F25C20_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein-related (TAIR:AT1G31510.1); Has 1263 Blast hits to 1246 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1261; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G11620.1p  transcript_id AT1G11620.1  protein_id AT1G11620.1p  transcript_id AT1G11620.1  
At1g11630	chr1:003913168	0.0	C/3913168-3914385	AT1G11630.1  CDS  gene_syn F25C20.22, F25C20_22  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: PPR336 (pentatricopeptide repeat 336) (TAIR:AT1G61870.1); Has 12390 Blast hits to 3643 proteins in 147 species: Archae - 4; Bacteria - 8; Metazoa - 197; Fungi - 174; Plants - 11635; Viruses - 0; Other Eukaryotes - 372 (source: NCBI BLink).  protein_id AT1G11630.1p  transcript_id AT1G11630.1  protein_id AT1G11630.1p  transcript_id AT1G11630.1  
At1g11640	chr1:003914629	0.0	C/3914629-3914700	AT1G11640.1  tRNA  gene_syn 51344.TRNA-TRP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Trp (anticodon: CCA)  transcript_id AT1G11640.1  
At1g11650	chr1:003914895	0.0	W/3914895-3915155,3915428-3915893,3917021-3917079,3917167-3917297,3917416-3917512,3917738-3917941	AT1G11650.2  CDS  gene_syn ATRBP45B, F25C20.21, F25C20_21, RBP45B  gene RBP45B  go_function RNA binding|GO:0003723|11105760|ISS  product RNA-binding protein 45 (RBP45), putative  note RBP45B; FUNCTIONS IN: RNA binding; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: ATRBP45C; RNA binding (TAIR:AT4G27000.1); Has 22877 Blast hits to 14020 proteins in 588 species: Archae - 14; Bacteria - 1484; Metazoa - 13266; Fungi - 2464; Plants - 3532; Viruses - 0; Other Eukaryotes - 2117 (source: NCBI BLink).  protein_id AT1G11650.2p  transcript_id AT1G11650.2  protein_id AT1G11650.2p  transcript_id AT1G11650.2  
At1g11650	chr1:003914895	0.0	W/3914895-3915155,3915428-3915893,3917021-3917079,3917167-3917301	AT1G11650.1  CDS  gene_syn ATRBP45B, F25C20.21, F25C20_21, RBP45B  gene RBP45B  go_function RNA binding|GO:0003723|11105760|ISS  product RNA-binding protein 45 (RBP45), putative  note RBP45B; FUNCTIONS IN: RNA binding; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: ATRBP45A (RNA-binding protein 45A); RNA binding (TAIR:AT5G54900.1); Has 16132 Blast hits to 10047 proteins in 553 species: Archae - 6; Bacteria - 1079; Metazoa - 9444; Fungi - 1649; Plants - 2578; Viruses - 0; Other Eukaryotes - 1376 (source: NCBI BLink).  protein_id AT1G11650.1p  transcript_id AT1G11650.1  protein_id AT1G11650.1p  transcript_id AT1G11650.1  
At1g11655	chr1:003919338	0.0	W/3919338-3919679	AT1G11655.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: trichome; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21902.1); Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11655.1p  transcript_id AT1G11655.1  protein_id AT1G11655.1p  transcript_id AT1G11655.1  
At1g11660	chr1:003921056	0.0	W/3921056-3922228,3922382-3922594,3922732-3922827,3922885-3923025,3923184-3923375,3923491-3923637,3923721-3923849,3923981-3924111,3924248-3924347	AT1G11660.1  CDS  gene_syn F25C20.19, F25C20_19  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product heat shock protein, putative  note heat shock protein, putative; FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: HSP91; ATP binding (TAIR:AT1G79930.1); Has 18340 Blast hits to 18232 proteins in 2790 species: Archae - 102; Bacteria - 6666; Metazoa - 2927; Fungi - 1006; Plants - 621; Viruses - 73; Other Eukaryotes - 6945 (source: NCBI BLink).  protein_id AT1G11660.1p  transcript_id AT1G11660.1  protein_id AT1G11660.1p  transcript_id AT1G11660.1  
At1g11660	chr1:003921056	0.0	W/3921056-3922228,3922382-3922594,3922732-3922827,3922915-3923025,3923184-3923375,3923491-3923637,3923721-3923849,3923981-3924111,3924248-3924347	AT1G11660.2  CDS  gene_syn F25C20.19, F25C20_19  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product heat shock protein, putative  note heat shock protein, putative; FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: ATP binding (TAIR:AT1G79920.2); Has 18271 Blast hits to 18162 proteins in 2788 species: Archae - 100; Bacteria - 6650; Metazoa - 2956; Fungi - 1002; Plants - 619; Viruses - 71; Other Eukaryotes - 6873 (source: NCBI BLink).  protein_id AT1G11660.2p  transcript_id AT1G11660.2  protein_id AT1G11660.2p  transcript_id AT1G11660.2  
At1g11670	chr1:003931168	0.0	C/3931168-3931482,3930276-3930907,3929437-3929493,3929096-3929334,3928887-3929005,3928700-3928786,3928520-3928582	AT1G11670.1  CDS  gene_syn F25C20.18, F25C20_18  go_component membrane|GO:0016020||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transporter activity, transporter activity; INVOLVED IN: N-terminal protein myristoylation, multidrug transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G61890.1); Has 6184 Blast hits to 6144 proteins in 1132 species: Archae - 136; Bacteria - 4008; Metazoa - 123; Fungi - 210; Plants - 728; Viruses - 0; Other Eukaryotes - 979 (source: NCBI BLink).  protein_id AT1G11670.1p  transcript_id AT1G11670.1  protein_id AT1G11670.1p  transcript_id AT1G11670.1  
At1g11680	chr1:003938925	0.0	W/3938925-3939398,3939593-3940585	AT1G11680.1  CDS  gene_syn CYP51, CYP51A2, CYP51G1, CYTOCHROME P450 51, CYTOCHROME P450 51A2, CYTOCHROME P450 51G1, EMB1738, F25C20.17, F25C20_17, embryo defective 1738  gene CYP51G1  function putative obtusifoliol 14-alpha demethylase involved in sterol biosynthesis.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process sterol biosynthetic process|GO:0016126|11437378|TAS  go_process sterol biosynthetic process|GO:0016126|16169959|IMP  go_function sterol 14-demethylase activity|GO:0008398|16169959|TAS  go_function oxygen binding|GO:0019825||ISS  product CYP51G1 (CYTOCHROME P450 51G1); oxygen binding / sterol 14-demethylase  note CYTOCHROME P450 51G1 (CYP51G1); FUNCTIONS IN: oxygen binding, sterol 14-demethylase activity; INVOLVED IN: embryonic development ending in seed dormancy, sterol biosynthetic process; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group IV (InterPro:IPR002403), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP707A3; (+)-abscisic acid 8 -hydroxylase/ oxygen binding (TAIR:AT5G45340.1); Has 21510 Blast hits to 21477 proteins in 1232 species: Archae - 42; Bacteria - 3195; Metazoa - 8844; Fungi - 3288; Plants - 4867; Viruses - 6; Other Eukaryotes - 1268 (source: NCBI BLink).  protein_id AT1G11680.1p  transcript_id AT1G11680.1  protein_id AT1G11680.1p  transcript_id AT1G11680.1  
At1g11684	chr1:003941103	0.0	C/3941103-3941300	AT1G11684.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G11684.1p  transcript_id AT1G11684.1  protein_id AT1G11684.1p  transcript_id AT1G11684.1  
At1g11690	chr1:003941469	0.0	W/3941469-3942212	AT1G11690.1  CDS  gene_syn F25C20.16, F25C20_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G50660.1); Has 5187 Blast hits to 4089 proteins in 353 species: Archae - 92; Bacteria - 307; Metazoa - 2549; Fungi - 241; Plants - 189; Viruses - 7; Other Eukaryotes - 1802 (source: NCBI BLink).  protein_id AT1G11690.1p  transcript_id AT1G11690.1  protein_id AT1G11690.1p  transcript_id AT1G11690.1  
At1g11700	chr1:003945852	0.0	W/3945852-3946457	AT1G11700.1  CDS  gene_syn F25C20.15, F25C20_15  go_component chloroplast|GO:0009507|15028209|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF584 (InterPro:IPR007608); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61930.1); Has 197 Blast hits to 197 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 196; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G11700.1p  transcript_id AT1G11700.1  protein_id AT1G11700.1p  transcript_id AT1G11700.1  
At1g11710	chr1:003948886	0.0	W/3948886-3950859	AT1G11710.1  CDS  gene_syn F25C20.14, F25C20_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G01110.1); Has 19625 Blast hits to 5674 proteins in 176 species: Archae - 2; Bacteria - 23; Metazoa - 403; Fungi - 262; Plants - 18143; Viruses - 0; Other Eukaryotes - 792 (source: NCBI BLink).  protein_id AT1G11710.1p  transcript_id AT1G11710.1  protein_id AT1G11710.1p  transcript_id AT1G11710.1  
At1g11720	chr1:003952511	0.0	W/3952511-3953618,3953739-3953953,3954080-3954353,3954436-3954611,3954691-3954798,3954886-3954995,3955094-3955199,3955307-3955477,3955597-3955725,3955811-3955993,3956072-3956203,3956297-3956408,3956504-3956627,3956711-3956840	AT1G11720.1  CDS  gene_syn ATSS3, F25C20.13, F25C20_13, STARCH SYNTHASE III, starch synthase 3  gene ATSS3  function Encodes a starch synthase that in addition to its role in starch biosynthesis also has a negative regulatory function in the biosynthesis of transient starch. The protein apparently contains a starch-binding domain (SBD).  go_component chloroplast|GO:0009507|18431481|IDA  go_process starch biosynthetic process|GO:0019252|15908598|IMP  go_function starch synthase activity|GO:0009011|15908598|IMP  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product ATSS3 (starch synthase 3); starch synthase/ transferase, transferring glycosyl groups  note starch synthase 3 (ATSS3); FUNCTIONS IN: transferase activity, transferring glycosyl groups, starch synthase activity; INVOLVED IN: starch biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Starch synthase III (InterPro:IPR009756), Glycogen/starch synthases, ADP-glucose type (InterPro:IPR011835), Starch synthase catalytic region (InterPro:IPR013534); BEST Arabidopsis thaliana protein match is: ATSS4; transferase, transferring glycosyl groups (TAIR:AT4G18240.1); Has 5777 Blast hits to 5716 proteins in 2081 species: Archae - 101; Bacteria - 2070; Metazoa - 18; Fungi - 88; Plants - 2825; Viruses - 1; Other Eukaryotes - 674 (source: NCBI BLink).  protein_id AT1G11720.1p  transcript_id AT1G11720.1  protein_id AT1G11720.1p  transcript_id AT1G11720.1  
At1g11730	chr1:003957473	0.0	W/3957473-3957588,3958169-3958253,3958333-3958361,3958458-3958651,3958735-3958798,3958905-3958977,3959063-3959183,3959266-3959353,3959457-3959582,3959682-3959791,3959965-3960113	AT1G11730.1  CDS  gene_syn F25C20.12, F25C20_12  go_component membrane|GO:0016020||IEA  go_process protein amino acid glycosylation|GO:0006486||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product galactosyltransferase family protein  note galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: galactosyltransferase family protein (TAIR:AT1G05170.2); Has 1053 Blast hits to 1050 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 735; Fungi - 0; Plants - 303; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G11730.1p  transcript_id AT1G11730.1  protein_id AT1G11730.1p  transcript_id AT1G11730.1  
At1g11735	chr1:003961348	0.0	C/3961348-3961464	AT1G11735.1  miRNA  gene_syn MICRORNA171B, MIR171B  gene MIR171B  function Encodes a microRNA that targets several SCL family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGAGCCGUGCCAAUAUCACG  product MIR171B (MICRORNA171B); miRNA  transcript_id AT1G11735.1  
At1g11740	chr1:003965559	0.0	C/3965559-3966824,3964880-3965210,3963632-3963662,3963317-3963563	AT1G11740.1  CDS  gene_syn F25C20.11, F25C20_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, inflorescence meristem, hypocotyl, flower, root; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62050.1); Has 773 Blast hits to 707 proteins in 96 species: Archae - 4; Bacteria - 18; Metazoa - 464; Fungi - 21; Plants - 186; Viruses - 2; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT1G11740.1p  transcript_id AT1G11740.1  protein_id AT1G11740.1p  transcript_id AT1G11740.1  
At1g11750	chr1:003967609	0.0	W/3967609-3967703,3967786-3967847,3968007-3968061,3968347-3968548,3968632-3968697,3968784-3968924,3969028-3969081,3969208-3969300,3969488-3969535	AT1G11750.1  CDS  gene_syn ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT, CLP PROTEASE PROTEOLYTIC SUBUNIT 6, CLPP6, F25C20.10, F25C20_10, NCLPP1, NCLPP6, NUCLEAR-ENCODED CLPP 1  gene CLPP6  function One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastid stroma|GO:0009532|14593120|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_component chloroplast thylakoid|GO:0009534|11278690|IDA  go_component chloroplast stroma|GO:0009570|11278690|IDA  go_component chloroplast stroma|GO:0009570|7580259|IDA  go_component chloroplastic endopeptidase Clp complex|GO:0009840|11278690|IDA  go_process chloroplast organization|GO:0009658|16980539|IMP  go_process photosynthesis|GO:0015979|16980539|IMP  product CLPP6; serine-type endopeptidase  note CLPP6; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: chloroplast organization, photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5); serine-type endopeptidase (TAIR:AT1G02560.1); Has 9008 Blast hits to 9004 proteins in 1698 species: Archae - 2; Bacteria - 4610; Metazoa - 115; Fungi - 50; Plants - 689; Viruses - 75; Other Eukaryotes - 3467 (source: NCBI BLink).  protein_id AT1G11750.1p  transcript_id AT1G11750.1  protein_id AT1G11750.1p  transcript_id AT1G11750.1  
At1g11755	chr1:003971441	0.0	C/3971441-3971488,3971013-3971283,3970882-3970943,3970556-3970751,3970379-3970475,3970208-3970290,3969987-3969994	AT1G11755.1  CDS  gene_syn LEAF WILTING 1, LEW1  gene LEW1  function Encodes a cis-prenyltransferase, involved in dolichol biosynthesis. Wilted leaves in mutants due to cell membrane lesions. Mutants have increased drought tolerance, but hypersensitve to dark stress.  go_process protein amino acid N-linked glycosylation|GO:0006487|18612099|IMP  go_process response to water deprivation|GO:0009414|18612099|IMP  go_process response to low light intensity stimulus|GO:0009645|18612099|IMP  go_process dolichol biosynthetic process|GO:0019408|18612099|IMP  go_process endoplasmic reticulum unfolded protein response|GO:0030968|18612099|IMP  go_function dehydrodolichyl diphosphate synthase activity|GO:0045547|18612099|IDA  product LEW1 (LEAF WILTING 1); dehydrodolichyl diphosphate synthase  note LEAF WILTING 1 (LEW1); FUNCTIONS IN: dehydrodolichyl diphosphate synthase activity; INVOLVED IN: endoplasmic reticulum unfolded protein response, dolichol biosynthetic process, response to water deprivation, protein amino acid N-linked glycosylation, response to low light intensity stimulus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Di-trans-poly-cis-decaprenylcistransferase-like (InterPro:IPR001441); Has 122 Blast hits to 122 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 37; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11755.1p  transcript_id AT1G11755.1  protein_id AT1G11755.1p  transcript_id AT1G11755.1  
At1g11760	chr1:003972356	0.0	C/3972356-3972811	AT1G11760.1  CDS  gene_syn F25C20.9, F25C20_9  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; Has 21 Blast hits to 21 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11760.1p  transcript_id AT1G11760.1  protein_id AT1G11760.1p  transcript_id AT1G11760.1  
At1g11765	chr1:003973908	0.0	W/3973908-3974321	AT1G11765.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product S1 self-incompatibility protein-related  note S1 self-incompatibility protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: self-incompatibility protein-related (TAIR:AT3G26880.1); Has 68 Blast hits to 68 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11765.1p  transcript_id AT1G11765.1  protein_id AT1G11765.1p  transcript_id AT1G11765.1  
At1g11770	chr1:003975679	0.0	W/3975679-3977289	AT1G11770.1  CDS  gene_syn F25C20.7, F25C20_7  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function electron carrier activity|GO:0009055||ISS  product FAD binding / catalytic/ electron carrier/ oxidoreductase  note FAD binding / catalytic/ electron carrier/ oxidoreductase; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: ATSEC1A; FAD binding / catalytic/ electron carrier/ oxidoreductase (TAIR:AT1G01980.1); Has 2756 Blast hits to 2626 proteins in 438 species: Archae - 12; Bacteria - 1140; Metazoa - 0; Fungi - 1082; Plants - 359; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).  protein_id AT1G11770.1p  transcript_id AT1G11770.1  protein_id AT1G11770.1p  transcript_id AT1G11770.1  
At1g11780	chr1:003979071	0.0	C/3979071-3979177,3978843-3978991,3978449-3978762,3978223-3978361,3978070-3978136,3977864-3977985,3977614-3977753	AT1G11780.1  CDS  gene_syn F25C20.6, F25C20_6  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase (TAIR:AT3G14160.1); Has 774 Blast hits to 774 proteins in 368 species: Archae - 0; Bacteria - 507; Metazoa - 84; Fungi - 62; Plants - 33; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT1G11780.1p  transcript_id AT1G11780.1  protein_id AT1G11780.1p  transcript_id AT1G11780.1  
At1g11785	chr1:003980873	0.0	C/3980873-3980902,3980148-3980258	AT1G11785.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11785.1p  transcript_id AT1G11785.1  protein_id AT1G11785.1p  transcript_id AT1G11785.1  
At1g11790	chr1:003981476	0.0	W/3981476-3981740,3983204-3983271,3983358-3983450,3983541-3983741,3983825-3983905,3983983-3984078,3984258-3984335,3984419-3984508,3984595-3984662,3984742-3984823,3984906-3984962	AT1G11790.1  CDS  gene_syn ADT1, F25C20.4, F25C20_4, arogenate dehydratase 1  gene ADT1  function Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identi& 64257;ed in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250].  go_process metabolic process|GO:0008152||IEA  go_process L-phenylalanine biosynthetic process|GO:0009094||IEA  go_component chloroplast|GO:0009507|19136569|IDA  go_process L-phenylalanine biosynthetic process|GO:0009094||ISS  go_function prephenate dehydratase activity|GO:0004664||ISS  go_function arogenate dehydratase activity|GO:0047769|17726025|IDA  product ADT1 (arogenate dehydratase 1); arogenate dehydratase/ prephenate dehydratase  note arogenate dehydratase 1 (ADT1); FUNCTIONS IN: arogenate dehydratase activity, prephenate dehydratase activity; INVOLVED IN: L-phenylalanine biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prephenate dehydratase (InterPro:IPR001086), Amino acid-binding ACT (InterPro:IPR002912), Prephenate dehydratase, conserved site (InterPro:IPR018528); BEST Arabidopsis thaliana protein match is: ADT2 (arogenate dehydratase 2); arogenate dehydratase/ prephenate dehydratase (TAIR:AT3G07630.2); Has 5032 Blast hits to 5032 proteins in 1198 species: Archae - 120; Bacteria - 2081; Metazoa - 2; Fungi - 71; Plants - 132; Viruses - 0; Other Eukaryotes - 2626 (source: NCBI BLink).  protein_id AT1G11790.1p  transcript_id AT1G11790.1  protein_id AT1G11790.1p  transcript_id AT1G11790.1  
At1g11790	chr1:003981476	0.0	W/3981476-3981740,3983204-3983271,3983358-3983450,3983541-3983741,3983825-3983905,3983983-3984078,3984258-3984335,3984419-3984562	AT1G11790.2  CDS  gene_syn ADT1, F25C20.4, F25C20_4, arogenate dehydratase 1  gene ADT1  function Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identi& 64257;ed in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250].  go_process L-phenylalanine biosynthetic process|GO:0009094||IEA  go_component chloroplast|GO:0009507|19136569|IDA  go_process L-phenylalanine biosynthetic process|GO:0009094||ISS  go_function prephenate dehydratase activity|GO:0004664||ISS  go_function arogenate dehydratase activity|GO:0047769|17726025|IDA  product ADT1 (arogenate dehydratase 1); arogenate dehydratase/ prephenate dehydratase  note arogenate dehydratase 1 (ADT1); FUNCTIONS IN: arogenate dehydratase activity, prephenate dehydratase activity; INVOLVED IN: L-phenylalanine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prephenate dehydratase (InterPro:IPR001086), Prephenate dehydratase, conserved site (InterPro:IPR018528); BEST Arabidopsis thaliana protein match is: ADT2 (arogenate dehydratase 2); arogenate dehydratase/ prephenate dehydratase (TAIR:AT3G07630.2); Has 4872 Blast hits to 4872 proteins in 1191 species: Archae - 120; Bacteria - 2063; Metazoa - 0; Fungi - 69; Plants - 132; Viruses - 0; Other Eukaryotes - 2488 (source: NCBI BLink).  protein_id AT1G11790.2p  transcript_id AT1G11790.2  protein_id AT1G11790.2p  transcript_id AT1G11790.2  
At1g11800	chr1:003986783	0.0	C/3986783-3987263,3986403-3986551,3986199-3986309,3985520-3986104	AT1G11800.1  CDS  gene_syn F25C20.3, F25C20_3  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function hydrolase activity|GO:0016787||ISS  product endonuclease/exonuclease/phosphatase family protein  note endonuclease/exonuclease/phosphatase family protein; FUNCTIONS IN: hydrolase activity, zinc ion binding; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), Zinc finger, RanBP2-type (InterPro:IPR001876); Has 273 Blast hits to 263 proteins in 68 species: Archae - 0; Bacteria - 12; Metazoa - 134; Fungi - 10; Plants - 55; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT1G11800.1p  transcript_id AT1G11800.1  protein_id AT1G11800.1p  transcript_id AT1G11800.1  
At1g11803	chr1:003987755	0.0	C/3987755-3988030	AT1G11803.1  pseudogenic_transcript  pseudo  note pseudogene, auxin responsive protein, blastp match of 74% identity and 1.2e-15 P-value to GP|3043536|dbj|BAA25434.1||AB000708 SAUR {Raphanus sativus}  
At1g11806	chr1:003988346	0.0	W/3988346-3989398	AT1G11806.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein, likely a tandem duplication of the immediatly downstream hypothetical protein which has since degenerated.  
At1g11810	chr1:003989763	0.0	W/3989763-3990896	AT1G11810.1  CDS  gene_syn F25C20.2, F25C20_2  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G13830.1); Has 490 Blast hits to 473 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 490; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11810.1p  transcript_id AT1G11810.1  protein_id AT1G11810.1p  transcript_id AT1G11810.1  
At1g11820	chr1:003993258	0.0	C/3993258-3993327,3991988-3993026,3991388-3991415,3991259-3991276	AT1G11820.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative (TAIR:AT2G01630.2); Has 1386 Blast hits to 1376 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1383; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G11820.1p  transcript_id AT1G11820.1  protein_id AT1G11820.1p  transcript_id AT1G11820.1  
At1g11840	chr1:003996045	0.0	W/3996045-3996142,3996238-3996362,3996443-3996507,3996599-3996811,3996890-3996937,3997034-3997141,3997239-3997391,3997477-3997518	AT1G11840.1  CDS  gene_syn ATGLX1, F12F1.32, F12F1_32, GLYOXALASE I, GLYOXALASE I HOMOLOG  gene ATGLX1  function Encodes a glyoxalase I homolog ATGLX1.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function lactoylglutathione lyase activity|GO:0004462||IEA  go_function metal ion binding|GO:0046872||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function lactoylglutathione lyase activity|GO:0004462||ISS  product ATGLX1 (GLYOXALASE I HOMOLOG); lactoylglutathione lyase/ metal ion binding  note GLYOXALASE I HOMOLOG (ATGLX1); FUNCTIONS IN: lactoylglutathione lyase activity, metal ion binding; INVOLVED IN: response to cadmium ion, carbohydrate metabolic process; LOCATED IN: plasma membrane, vacuole, chloroplast envelope; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361), Glyoxalase I, conserved site (InterPro:IPR018146), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: lactoylglutathione lyase, putative / glyoxalase I, putative (TAIR:AT1G67280.1); Has 5848 Blast hits to 3462 proteins in 977 species: Archae - 63; Bacteria - 3233; Metazoa - 404; Fungi - 180; Plants - 152; Viruses - 0; Other Eukaryotes - 1816 (source: NCBI BLink).  protein_id AT1G11840.1p  transcript_id AT1G11840.1  protein_id AT1G11840.1p  transcript_id AT1G11840.1  
At1g11840	chr1:003996045	0.0	W/3996045-3996142,3996238-3996362,3996443-3996507,3996599-3996811,3996890-3996937,3997034-3997141,3997239-3997391,3997477-3997518	AT1G11840.2  CDS  gene_syn ATGLX1, F12F1.32, F12F1_32, GLYOXALASE I, GLYOXALASE I HOMOLOG  gene ATGLX1  function Encodes a glyoxalase I homolog ATGLX1.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function lactoylglutathione lyase activity|GO:0004462||IEA  go_function metal ion binding|GO:0046872||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function lactoylglutathione lyase activity|GO:0004462||ISS  product ATGLX1 (GLYOXALASE I HOMOLOG); lactoylglutathione lyase/ metal ion binding  note GLYOXALASE I HOMOLOG (ATGLX1); FUNCTIONS IN: lactoylglutathione lyase activity, metal ion binding; INVOLVED IN: response to cadmium ion, carbohydrate metabolic process; LOCATED IN: plasma membrane, vacuole, chloroplast envelope; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361), Glyoxalase I, conserved site (InterPro:IPR018146), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: lactoylglutathione lyase, putative / glyoxalase I, putative (TAIR:AT1G67280.1); Has 5848 Blast hits to 3462 proteins in 977 species: Archae - 63; Bacteria - 3233; Metazoa - 404; Fungi - 180; Plants - 152; Viruses - 0; Other Eukaryotes - 1816 (source: NCBI BLink).  protein_id AT1G11840.2p  transcript_id AT1G11840.2  protein_id AT1G11840.2p  transcript_id AT1G11840.2  
At1g11840	chr1:003996045	0.0	W/3996045-3996142,3996238-3996362,3996443-3996507,3996599-3996811,3996890-3996937,3997034-3997141,3997239-3997391,3997477-3997518	AT1G11840.3  CDS  gene_syn ATGLX1, F12F1.32, F12F1_32, GLYOXALASE I, GLYOXALASE I HOMOLOG  gene ATGLX1  function Encodes a glyoxalase I homolog ATGLX1.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function lactoylglutathione lyase activity|GO:0004462||IEA  go_function metal ion binding|GO:0046872||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function lactoylglutathione lyase activity|GO:0004462||ISS  product ATGLX1 (GLYOXALASE I HOMOLOG); lactoylglutathione lyase/ metal ion binding  note GLYOXALASE I HOMOLOG (ATGLX1); FUNCTIONS IN: lactoylglutathione lyase activity, metal ion binding; INVOLVED IN: response to cadmium ion, carbohydrate metabolic process; LOCATED IN: plasma membrane, vacuole, chloroplast envelope; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361), Glyoxalase I, conserved site (InterPro:IPR018146), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: lactoylglutathione lyase, putative / glyoxalase I, putative (TAIR:AT1G67280.1); Has 5848 Blast hits to 3462 proteins in 977 species: Archae - 63; Bacteria - 3233; Metazoa - 404; Fungi - 180; Plants - 152; Viruses - 0; Other Eukaryotes - 1816 (source: NCBI BLink).  protein_id AT1G11840.3p  transcript_id AT1G11840.3  protein_id AT1G11840.3p  transcript_id AT1G11840.3  
At1g11840	chr1:003996045	0.0	W/3996045-3996142,3996238-3996362,3996443-3996507,3996599-3996811,3996890-3996937,3997034-3997141,3997239-3997391,3997477-3997518	AT1G11840.4  CDS  gene_syn ATGLX1, F12F1.32, F12F1_32, GLYOXALASE I, GLYOXALASE I HOMOLOG  gene ATGLX1  function Encodes a glyoxalase I homolog ATGLX1.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function lactoylglutathione lyase activity|GO:0004462||IEA  go_function metal ion binding|GO:0046872||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function lactoylglutathione lyase activity|GO:0004462||ISS  product ATGLX1 (GLYOXALASE I HOMOLOG); lactoylglutathione lyase/ metal ion binding  note GLYOXALASE I HOMOLOG (ATGLX1); FUNCTIONS IN: lactoylglutathione lyase activity, metal ion binding; INVOLVED IN: response to cadmium ion, carbohydrate metabolic process; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361), Glyoxalase I, conserved site (InterPro:IPR018146), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: lactoylglutathione lyase, putative / glyoxalase I, putative (TAIR:AT1G67280.1); Has 5848 Blast hits to 3462 proteins in 977 species: Archae - 63; Bacteria - 3233; Metazoa - 404; Fungi - 180; Plants - 152; Viruses - 0; Other Eukaryotes - 1816 (source: NCBI BLink).  protein_id AT1G11840.4p  transcript_id AT1G11840.4  protein_id AT1G11840.4p  transcript_id AT1G11840.4  
At1g11840	chr1:003996045	0.0	W/3996045-3996142,3996238-3996362,3996443-3996507,3996599-3996811,3996890-3996937,3997034-3997141,3997249-3997290	AT1G11840.5  CDS  gene_syn ATGLX1, F12F1.32, F12F1_32, GLYOXALASE I, GLYOXALASE I HOMOLOG  gene ATGLX1  function Encodes a glyoxalase I homolog ATGLX1.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function lactoylglutathione lyase activity|GO:0004462||IEA  go_function metal ion binding|GO:0046872||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function lactoylglutathione lyase activity|GO:0004462||ISS  product ATGLX1 (GLYOXALASE I HOMOLOG); lactoylglutathione lyase/ metal ion binding  note GLYOXALASE I HOMOLOG (ATGLX1); FUNCTIONS IN: lactoylglutathione lyase activity, metal ion binding; INVOLVED IN: response to cadmium ion, carbohydrate metabolic process; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361), Glyoxalase I, conserved site (InterPro:IPR018146), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: lactoylglutathione lyase, putative / glyoxalase I, putative (TAIR:AT1G67280.1); Has 5506 Blast hits to 3438 proteins in 965 species: Archae - 65; Bacteria - 3031; Metazoa - 404; Fungi - 197; Plants - 210; Viruses - 0; Other Eukaryotes - 1599 (source: NCBI BLink).  protein_id AT1G11840.5p  transcript_id AT1G11840.5  protein_id AT1G11840.5p  transcript_id AT1G11840.5  
At1g11850	chr1:003999237	0.0	W/3999237-3999408,3999535-3999563	AT1G11850.3  CDS  gene_syn F12F1.31, F12F1_31  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; Has 18 Blast hits to 17 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11850.3p  transcript_id AT1G11850.3  protein_id AT1G11850.3p  transcript_id AT1G11850.3  
At1g11850	chr1:003999237	0.0	W/3999237-3999471,3999517-3999563	AT1G11850.1  CDS  gene_syn F12F1.31, F12F1_31  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; Has 36117 Blast hits to 7699 proteins in 680 species: Archae - 46; Bacteria - 12408; Metazoa - 12818; Fungi - 1456; Plants - 6002; Viruses - 463; Other Eukaryotes - 2924 (source: NCBI BLink).  protein_id AT1G11850.1p  transcript_id AT1G11850.1  protein_id AT1G11850.1p  transcript_id AT1G11850.1  
At1g11850	chr1:003999237	0.0	W/3999237-3999477,3999517-3999563	AT1G11850.4  CDS  gene_syn F12F1.31, F12F1_31  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; Has 48106 Blast hits to 9405 proteins in 759 species: Archae - 69; Bacteria - 19990; Metazoa - 15033; Fungi - 1939; Plants - 6451; Viruses - 555; Other Eukaryotes - 4069 (source: NCBI BLink).  protein_id AT1G11850.4p  transcript_id AT1G11850.4  protein_id AT1G11850.4p  transcript_id AT1G11850.4  
At1g11850	chr1:003999237	0.0	W/3999237-3999563	AT1G11850.2  CDS  gene_syn F12F1.31, F12F1_31  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; Has 77041 Blast hits to 15434 proteins in 1037 species: Archae - 102; Bacteria - 34294; Metazoa - 21656; Fungi - 3622; Plants - 7730; Viruses - 781; Other Eukaryotes - 8856 (source: NCBI BLink).  protein_id AT1G11850.2p  transcript_id AT1G11850.2  protein_id AT1G11850.2p  transcript_id AT1G11850.2  
At1g11860	chr1:004001801	0.0	W/4001801-4002361,4002457-4002575,4002699-4003245	AT1G11860.1  CDS  gene_syn F12F1.30, F12F1_30  go_component mitochondrion|GO:0005739|18385124|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function aminomethyltransferase activity|GO:0004047||IEA  go_function aminomethyltransferase activity|GO:0004047||ISS  product aminomethyltransferase, putative  note aminomethyltransferase, putative; FUNCTIONS IN: aminomethyltransferase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycine cleavage system T protein (InterPro:IPR006223), Glycine cleavage T-protein, N-terminal (InterPro:IPR006222), Glycine cleavage T-protein, C-terminal barrel (InterPro:IPR013977); BEST Arabidopsis thaliana protein match is: aminomethyltransferase (TAIR:AT1G60990.3); Has 16017 Blast hits to 16014 proteins in 1169 species: Archae - 69; Bacteria - 3430; Metazoa - 374; Fungi - 107; Plants - 67; Viruses - 0; Other Eukaryotes - 11970 (source: NCBI BLink).  protein_id AT1G11860.1p  transcript_id AT1G11860.1  protein_id AT1G11860.1p  transcript_id AT1G11860.1  
At1g11860	chr1:004001801	0.0	W/4001801-4002361,4002457-4002575,4002699-4003245	AT1G11860.2  CDS  gene_syn F12F1.30, F12F1_30  go_component mitochondrion|GO:0005739|18385124|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function aminomethyltransferase activity|GO:0004047||IEA  go_function aminomethyltransferase activity|GO:0004047||ISS  product aminomethyltransferase, putative  note aminomethyltransferase, putative; FUNCTIONS IN: aminomethyltransferase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycine cleavage system T protein (InterPro:IPR006223), Glycine cleavage T-protein, N-terminal (InterPro:IPR006222), Glycine cleavage T-protein, C-terminal barrel (InterPro:IPR013977); BEST Arabidopsis thaliana protein match is: aminomethyltransferase (TAIR:AT1G60990.3); Has 16017 Blast hits to 16014 proteins in 1169 species: Archae - 69; Bacteria - 3430; Metazoa - 374; Fungi - 107; Plants - 67; Viruses - 0; Other Eukaryotes - 11970 (source: NCBI BLink).  protein_id AT1G11860.2p  transcript_id AT1G11860.2  protein_id AT1G11860.2p  transcript_id AT1G11860.2  
At1g11870	chr1:004003895	0.0	W/4003895-4004099,4004170-4004321,4004563-4004656,4004732-4004880,4004979-4005071,4005348-4005527,4005614-4005780,4005887-4006021,4006097-4006190,4006281-4006556	AT1G11870.2  CDS  gene_syn ATSRS, F12F1.29, F12F1_29, OVA7, SERYL-TRNA SYNTHETASE, SRS, ovule abortion 7  gene SRS  function Seryl-tRNA synthetase targeted to chloroplasts and mitochondria. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.  go_component chloroplast|GO:0009507|18431481|IDA  go_component mitochondrion|GO:0005739|16107332|IDA  go_component mitochondrion|GO:0005739|16251277|IDA  go_component chloroplast|GO:0009507|16107332|IDA  go_component chloroplast|GO:0009507|16251277|IDA  go_process seryl-tRNA aminoacylation|GO:0006434||ISS  go_process mitochondrion organization|GO:0007005|16107332|TAS  go_process chloroplast organization|GO:0009658|16107332|TAS  go_process tRNA aminoacylation|GO:0043039||TAS  go_process ovule development|GO:0048481|16297076|IMP  go_function serine-tRNA ligase activity|GO:0004828|16107332|ISS  go_function serine-tRNA ligase activity|GO:0004828||ISS  product SRS (SERYL-TRNA SYNTHETASE); serine-tRNA ligase  note SERYL-TRNA SYNTHETASE (SRS); FUNCTIONS IN: serine-tRNA ligase activity; INVOLVED IN: chloroplast organization, mitochondrion organization, tRNA aminoacylation, seryl-tRNA aminoacylation, ovule development; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA-binding arm (InterPro:IPR010978), Seryl-tRNA synthetase, class IIa, N-terminal (InterPro:IPR015866), Aminoacyl-tRNA synthetase, class II (G, H, P and S), conserved region (InterPro:IPR002314), Seryl-tRNA synthetase, class IIa (InterPro:IPR002317), Ubiquitin (InterPro:IPR000626), Aminoacyl-tRNA synthetase, class II, conserved region (InterPro:IPR006195), Seryl-tRNA synthetase, class IIa, C-terminal (InterPro:IPR018156); BEST Arabidopsis thaliana protein match is: seryl-tRNA synthetase / serine--tRNA ligase (TAIR:AT5G27470.1); Has 8976 Blast hits to 8972 proteins in 1644 species: Archae - 145; Bacteria - 3785; Metazoa - 338; Fungi - 197; Plants - 71; Viruses - 0; Other Eukaryotes - 4440 (source: NCBI BLink).  protein_id AT1G11870.2p  transcript_id AT1G11870.2  protein_id AT1G11870.2p  transcript_id AT1G11870.2  
At1g11870	chr1:004003895	0.0	W/4003895-4004099,4004170-4004321,4004563-4004656,4004732-4004880,4004979-4005071,4005348-4005527,4005614-4005780,4005887-4006021,4006117-4006150	AT1G11870.3  CDS  gene_syn ATSRS, F12F1.29, F12F1_29, OVA7, SERYL-TRNA SYNTHETASE, SRS, ovule abortion 7  gene SRS  function Seryl-tRNA synthetase targeted to chloroplasts and mitochondria. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.  go_component chloroplast|GO:0009507|18431481|IDA  go_component mitochondrion|GO:0005739|16107332|IDA  go_component mitochondrion|GO:0005739|16251277|IDA  go_component chloroplast|GO:0009507|16107332|IDA  go_component chloroplast|GO:0009507|16251277|IDA  go_process seryl-tRNA aminoacylation|GO:0006434||ISS  go_process mitochondrion organization|GO:0007005|16107332|TAS  go_process chloroplast organization|GO:0009658|16107332|TAS  go_process tRNA aminoacylation|GO:0043039||TAS  go_process ovule development|GO:0048481|16297076|IMP  go_function serine-tRNA ligase activity|GO:0004828|16107332|ISS  go_function serine-tRNA ligase activity|GO:0004828||ISS  product SRS (SERYL-TRNA SYNTHETASE); serine-tRNA ligase  note SERYL-TRNA SYNTHETASE (SRS); FUNCTIONS IN: serine-tRNA ligase activity; INVOLVED IN: chloroplast organization, mitochondrion organization, tRNA aminoacylation, seryl-tRNA aminoacylation, ovule development; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA-binding arm (InterPro:IPR010978), Seryl-tRNA synthetase, class IIa, N-terminal (InterPro:IPR015866), Aminoacyl-tRNA synthetase, class II (G, H, P and S), conserved region (InterPro:IPR002314), Seryl-tRNA synthetase, class IIa (InterPro:IPR002317), Ubiquitin (InterPro:IPR000626), Aminoacyl-tRNA synthetase, class II, conserved region (InterPro:IPR006195), Seryl-tRNA synthetase, class IIa, C-terminal (InterPro:IPR018156); BEST Arabidopsis thaliana protein match is: seryl-tRNA synthetase / serine--tRNA ligase (TAIR:AT5G27470.1); Has 8081 Blast hits to 8077 proteins in 1633 species: Archae - 142; Bacteria - 3619; Metazoa - 269; Fungi - 193; Plants - 66; Viruses - 0; Other Eukaryotes - 3792 (source: NCBI BLink).  protein_id AT1G11870.3p  transcript_id AT1G11870.3  protein_id AT1G11870.3p  transcript_id AT1G11870.3  
At1g11870	chr1:004003895	0.0	W/4003895-4004099,4004176-4004321,4004563-4004656,4004732-4004880,4004979-4005071,4005348-4005527,4005614-4005780,4005887-4006021,4006097-4006190,4006281-4006556	AT1G11870.1  CDS  gene_syn ATSRS, F12F1.29, F12F1_29, OVA7, SERYL-TRNA SYNTHETASE, SRS, ovule abortion 7  gene SRS  function Seryl-tRNA synthetase targeted to chloroplasts and mitochondria. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.  go_component chloroplast|GO:0009507|18431481|IDA  go_component mitochondrion|GO:0005739|16107332|IDA  go_component mitochondrion|GO:0005739|16251277|IDA  go_component chloroplast|GO:0009507|16107332|IDA  go_component chloroplast|GO:0009507|16251277|IDA  go_process seryl-tRNA aminoacylation|GO:0006434||ISS  go_process mitochondrion organization|GO:0007005|16107332|TAS  go_process chloroplast organization|GO:0009658|16107332|TAS  go_process tRNA aminoacylation|GO:0043039||TAS  go_process ovule development|GO:0048481|16297076|IMP  go_function serine-tRNA ligase activity|GO:0004828|16107332|ISS  go_function serine-tRNA ligase activity|GO:0004828||ISS  product SRS (SERYL-TRNA SYNTHETASE); serine-tRNA ligase  note SERYL-TRNA SYNTHETASE (SRS); FUNCTIONS IN: serine-tRNA ligase activity; INVOLVED IN: chloroplast organization, mitochondrion organization, tRNA aminoacylation, seryl-tRNA aminoacylation, ovule development; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA-binding arm (InterPro:IPR010978), Seryl-tRNA synthetase, class IIa, N-terminal (InterPro:IPR015866), Aminoacyl-tRNA synthetase, class II (G, H, P and S), conserved region (InterPro:IPR002314), Seryl-tRNA synthetase, class IIa (InterPro:IPR002317), Ubiquitin (InterPro:IPR000626), Aminoacyl-tRNA synthetase, class II, conserved region (InterPro:IPR006195), Seryl-tRNA synthetase, class IIa, C-terminal (InterPro:IPR018156); BEST Arabidopsis thaliana protein match is: seryl-tRNA synthetase / serine--tRNA ligase (TAIR:AT5G27470.1); Has 8974 Blast hits to 8970 proteins in 1644 species: Archae - 145; Bacteria - 3787; Metazoa - 336; Fungi - 197; Plants - 71; Viruses - 0; Other Eukaryotes - 4438 (source: NCBI BLink).  protein_id AT1G11870.1p  transcript_id AT1G11870.1  protein_id AT1G11870.1p  transcript_id AT1G11870.1  
At1g11880	chr1:004009988	0.0	C/4009988-4010327,4009799-4009904,4009578-4009670,4009270-4009465,4008725-4008903,4008412-4008641,4008177-4008337,4007909-4008073	AT1G11880.1  CDS  gene_syn F12F1.28, F12F1_28  go_component endoplasmic reticulum membrane|GO:0005789||IEA  go_component integral to membrane|GO:0016021||IEA  go_process GPI anchor biosynthetic process|GO:0006506||IEA  go_function transferase activity, transferring hexosyl groups|GO:0016758||IEA  product transferase, transferring hexosyl groups  note transferase, transferring hexosyl groups; FUNCTIONS IN: transferase activity, transferring hexosyl groups; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: integral to membrane, endoplasmic reticulum membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Mannosyltransferase, PIG-V (InterPro:IPR007315); Has 346 Blast hits to 328 proteins in 162 species: Archae - 2; Bacteria - 58; Metazoa - 114; Fungi - 104; Plants - 17; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT1G11880.1p  transcript_id AT1G11880.1  protein_id AT1G11880.1p  transcript_id AT1G11880.1  
At1g11890	chr1:004011509	0.0	W/4011509-4011696,4011984-4012144,4012236-4012382,4012531-4012607,4012752-4012835	AT1G11890.1  CDS  gene_syn ATSEC22, F12F1.27, F12F1_27, SEC22, SECRETION 22  gene SEC22  function member of SEC22 Gene Family  go_component plasma membrane|GO:0005886|17644812|IDA  go_process transport|GO:0006810||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_component endoplasmic reticulum|GO:0005783|16244155|IDA  go_component Golgi apparatus|GO:0005794|16244155|IDA  go_component membrane|GO:0016020||ISS  go_process vesicle-mediated transport|GO:0016192||ISS  go_function transporter activity|GO:0005215||ISS  product SEC22; transporter  note SEC22; FUNCTIONS IN: transporter activity; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: endoplasmic reticulum, Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Synaptobrevin (InterPro:IPR001388), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: vesicle transport protein-related (TAIR:AT5G52270.1); Has 1114 Blast hits to 1113 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 467; Fungi - 222; Plants - 255; Viruses - 0; Other Eukaryotes - 170 (source: NCBI BLink).  protein_id AT1G11890.1p  transcript_id AT1G11890.1  protein_id AT1G11890.1p  transcript_id AT1G11890.1  
At1g11900	chr1:004014571	0.0	C/4014571-4014630,4013166-4014209	AT1G11900.1  CDS  gene_syn F12F1.26, F12F1_26  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G06920.1); Has 14124 Blast hits to 4790 proteins in 158 species: Archae - 3; Bacteria - 6; Metazoa - 177; Fungi - 194; Plants - 13150; Viruses - 0; Other Eukaryotes - 594 (source: NCBI BLink).  protein_id AT1G11900.1p  transcript_id AT1G11900.1  protein_id AT1G11900.1p  transcript_id AT1G11900.1  
At1g11905	chr1:004014958	0.0	W/4014958-4015240,4015636-4015666,4015874-4016222	AT1G11905.2  CDS  go_component endoplasmic reticulum|GO:0005783||IEA  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, integral to membrane, endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: B-cell receptor-associated 31-like (InterPro:IPR008417); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42570.1).  protein_id AT1G11905.2p  transcript_id AT1G11905.2  protein_id AT1G11905.2p  transcript_id AT1G11905.2  
At1g11905	chr1:004014958	0.0	W/4014958-4015240,4015840-4016222	AT1G11905.1  CDS  go_component endoplasmic reticulum|GO:0005783||IEA  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, integral to membrane, endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: B-cell receptor-associated 31-like (InterPro:IPR008417); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42570.1); Has 65 Blast hits to 65 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11905.1p  transcript_id AT1G11905.1  protein_id AT1G11905.1p  transcript_id AT1G11905.1  
At1g11910	chr1:004019527	0.0	C/4019527-4019874,4019382-4019442,4019102-4019196,4018905-4019017,4018653-4018821,4018527-4018566,4018330-4018394,4018125-4018238,4017960-4018024,4017686-4017842,4017469-4017588,4017290-4017378,4017119-4017203	AT1G11910.1  CDS  gene_syn F12F1.24, F12F1_24  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis, response to salt stress; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Saposin-like (InterPro:IPR011001), Peptidase aspartic, catalytic (InterPro:IPR009007), Saposin-like type B, 1 (InterPro:IPR007856), Saposin-like type B, 2 (InterPro:IPR008138), Saposin B (InterPro:IPR008139), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT1G62290.2); Has 5898 Blast hits to 4016 proteins in 342 species: Archae - 0; Bacteria - 2; Metazoa - 3476; Fungi - 1208; Plants - 429; Viruses - 0; Other Eukaryotes - 783 (source: NCBI BLink).  protein_id AT1G11910.1p  transcript_id AT1G11910.1  protein_id AT1G11910.1p  transcript_id AT1G11910.1  
At1g11915	chr1:004021830	0.0	W/4021830-4022646,4022792-4022833,4022954-4023084	AT1G11915.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17350.1); Has 109 Blast hits to 109 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11915.1p  transcript_id AT1G11915.1  protein_id AT1G11915.1p  transcript_id AT1G11915.1  
At1g11920	chr1:004024408	0.0	C/4024408-4025097,4024223-4024326,4023995-4024133,4023667-4023888	AT1G11920.1  CDS  gene_syn F12F1.22, F12F1_22  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function lyase activity|GO:0016829||ISS  go_function pectate lyase activity|GO:0030570||ISS  product pectate lyase family protein  note pectate lyase family protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectate lyase family protein (TAIR:AT4G22080.1); Has 932 Blast hits to 927 proteins in 163 species: Archae - 0; Bacteria - 412; Metazoa - 0; Fungi - 116; Plants - 395; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G11920.1p  transcript_id AT1G11920.1  protein_id AT1G11920.1p  transcript_id AT1G11920.1  
At1g11925	chr1:004026195	0.0	C/4026195-4026617	AT1G11925.1  CDS  function Encodes a Stigma-specific Stig1 family protein  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Stigma-specific protein Stig1 (InterPro:IPR006969); BEST Arabidopsis thaliana protein match is: stigma-specific Stig1 family protein (TAIR:AT1G50720.1); Has 160 Blast hits to 100 proteins in 23 species: Archae - 0; Bacteria - 80; Metazoa - 3; Fungi - 8; Plants - 64; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G11925.1p  transcript_id AT1G11925.1  protein_id AT1G11925.1p  transcript_id AT1G11925.1  
At1g11930	chr1:004028783	0.0	W/4028783-4029043,4029142-4029208,4029324-4029370,4029628-4029715,4029818-4029951,4030041-4030139,4030221-4030298	AT1G11930.1  CDS  gene_syn F12F1.20, F12F1_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function pyridoxal phosphate binding|GO:0030170||ISS  product alanine racemase family protein  note alanine racemase family protein; FUNCTIONS IN: pyridoxal phosphate binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (InterPro:IPR011078), Alanine racemase, N-terminal (InterPro:IPR001608); BEST Arabidopsis thaliana protein match is: pyridoxal phosphate binding (TAIR:AT4G26860.1); Has 4934 Blast hits to 4934 proteins in 1278 species: Archae - 14; Bacteria - 2203; Metazoa - 109; Fungi - 88; Plants - 34; Viruses - 0; Other Eukaryotes - 2486 (source: NCBI BLink).  protein_id AT1G11930.1p  transcript_id AT1G11930.1  protein_id AT1G11930.1p  transcript_id AT1G11930.1  
At1g11930	chr1:004028783	0.0	W/4028783-4029043,4029142-4029208,4029324-4029370,4029628-4029715,4029818-4029951,4030041-4030139,4030227-4030298	AT1G11930.2  CDS  gene_syn F12F1.20, F12F1_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function pyridoxal phosphate binding|GO:0030170||ISS  product alanine racemase family protein  note alanine racemase family protein; FUNCTIONS IN: pyridoxal phosphate binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (InterPro:IPR011078), Alanine racemase, N-terminal (InterPro:IPR001608); BEST Arabidopsis thaliana protein match is: pyridoxal phosphate binding (TAIR:AT4G26860.1); Has 5031 Blast hits to 5031 proteins in 1279 species: Archae - 14; Bacteria - 2215; Metazoa - 109; Fungi - 88; Plants - 34; Viruses - 0; Other Eukaryotes - 2571 (source: NCBI BLink).  protein_id AT1G11930.2p  transcript_id AT1G11930.2  protein_id AT1G11930.2p  transcript_id AT1G11930.2  
At1g11940	chr1:004033659	0.0	C/4033659-4033946,4033460-4033576,4033284-4033384,4033088-4033159,4032876-4032957,4032648-4032728,4032506-4032547,4032258-4032314,4032020-4032166,4031768-4031932	AT1G11940.1  CDS  gene_syn F12F1.19, F12F1_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF266, plant (InterPro:IPR004949); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62305.1); Has 329 Blast hits to 329 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 304; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT1G11940.1p  transcript_id AT1G11940.1  protein_id AT1G11940.1p  transcript_id AT1G11940.1  
At1g11950	chr1:004037759	0.0	C/4037759-4038310,4037557-4037672,4037377-4037476,4037134-4037266,4036994-4037057,4036212-4036908,4035804-4036133,4035442-4035723,4035294-4035366,4035126-4035211,4034926-4035045,4034747-4034821	AT1G11950.1  CDS  gene_syn F12F1.18, F12F1_18  go_function transcription factor activity|GO:0003700||ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT1G62310.1); Has 609 Blast hits to 529 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 266; Fungi - 23; Plants - 176; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).  protein_id AT1G11950.1p  transcript_id AT1G11950.1  protein_id AT1G11950.1p  transcript_id AT1G11950.1  
At1g11960	chr1:004042830	0.0	C/4042830-4043143,4042581-4042736,4042367-4042502,4042193-4042294,4041991-4042110,4041827-4041907,4041407-4041747,4041082-4041327,4040671-4040995,4040266-4040499,4039871-4040131	AT1G11960.1  CDS  gene_syn F12F1.17, F12F1_17  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: early-responsive to dehydration protein-related / ERD protein-related (TAIR:AT1G62320.1); Has 746 Blast hits to 706 proteins in 111 species: Archae - 0; Bacteria - 4; Metazoa - 131; Fungi - 370; Plants - 224; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G11960.1p  transcript_id AT1G11960.1  protein_id AT1G11960.1p  transcript_id AT1G11960.1  
At1g11970	chr1:004044370	0.0	W/4044370-4044669	AT1G11970.1  CDS  gene_syn F12F1.16, F12F1_16  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); Has 216 Blast hits to 216 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 129; Fungi - 14; Plants - 69; Viruses - 1; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G11970.1p  transcript_id AT1G11970.1  protein_id AT1G11970.1p  transcript_id AT1G11970.1  
At1g11980	chr1:004045619	0.0	W/4045619-4045855	AT1G11980.1  CDS  gene_syn F12F1.15, F12F1_15, RUB3, UBIQUITIN-RELATED PROTEIN 3  gene RUB3  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product RUB3 (UBIQUITIN-RELATED PROTEIN 3)  note UBIQUITIN-RELATED PROTEIN 3 (RUB3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, flower; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: RUB1 (RELATED TO UBIQUITIN 1); protein binding (TAIR:AT1G31340.1); Has 7850 Blast hits to 4332 proteins in 581 species: Archae - 0; Bacteria - 4; Metazoa - 3596; Fungi - 873; Plants - 1659; Viruses - 161; Other Eukaryotes - 1557 (source: NCBI BLink).  protein_id AT1G11980.1p  transcript_id AT1G11980.1  protein_id AT1G11980.1p  transcript_id AT1G11980.1  
At1g11990	chr1:004048731	0.0	C/4048731-4049060,4048386-4048478,4048175-4048313,4048036-4048097,4047862-4047950,4047635-4047755,4047401-4047544,4047222-4047323,4046965-4047110,4046637-4046877,4046246-4046551	AT1G11990.1  CDS  gene_syn F12F1.14, F12F1_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, male gametophyte, sepal, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62330.1); Has 426 Blast hits to 420 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 426; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11990.1p  transcript_id AT1G11990.1  protein_id AT1G11990.1p  transcript_id AT1G11990.1  
At1g12000	chr1:004053532	0.0	C/4053532-4053727,4053138-4053296,4052916-4053037,4052733-4052786,4052530-4052636,4052286-4052391,4052052-4052115,4051874-4051962,4051516-4051647,4051245-4051415,4051023-4051138,4050797-4050908,4050604-4050688,4050474-4050518,4050322-4050390,4050159-4050232	AT1G12000.1  CDS  gene_syn F12F1.13, F12F1_13  go_component cell wall|GO:0005618|16287169|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex|GO:0010318||ISS  go_process glycolysis|GO:0006096||ISS  go_function diphosphate-fructose-6-phosphate 1-phosphotransferase activity|GO:0047334||ISS  product pyrophosphate--fructose-6-phosphate 1-phosphotransferase beta subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative  note pyrophosphate--fructose-6-phosphate 1-phosphotransferase beta subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative; FUNCTIONS IN: diphosphate-fructose-6-phosphate 1-phosphotransferase activity; INVOLVED IN: response to cadmium ion, glycolysis; LOCATED IN: pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex, cell wall, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase PfpB (InterPro:IPR011183), Phosphofructokinase (InterPro:IPR000023); BEST Arabidopsis thaliana protein match is: MEE51 (maternal effect embryo arrest 51); diphosphate-fructose-6-phosphate 1-phosphotransferase (TAIR:AT4G04040.1); Has 3585 Blast hits to 3515 proteins in 1006 species: Archae - 20; Bacteria - 2321; Metazoa - 52; Fungi - 90; Plants - 237; Viruses - 2; Other Eukaryotes - 863 (source: NCBI BLink).  protein_id AT1G12000.1p  transcript_id AT1G12000.1  protein_id AT1G12000.1p  transcript_id AT1G12000.1  
At1g12010	chr1:004056274	0.0	W/4056274-4056387,4056562-4056788,4056877-4057210,4057383-4057670	AT1G12010.1  CDS  gene_syn F12F1.12, F12F1_12  function encodes a protein whose sequence is similar to 1-amino-cyclopropane-1-carboxylic acid oxidase  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function 1-aminocyclopropane-1-carboxylate oxidase activity|GO:0009815||ISS  product 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative  note 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative; FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate oxidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: ACO2 (ACC OXIDASE 2); 1-aminocyclopropane-1-carboxylate oxidase (TAIR:AT1G62380.1); Has 5877 Blast hits to 5855 proteins in 681 species: Archae - 0; Bacteria - 707; Metazoa - 112; Fungi - 650; Plants - 3087; Viruses - 0; Other Eukaryotes - 1321 (source: NCBI BLink).  protein_id AT1G12010.1p  transcript_id AT1G12010.1  protein_id AT1G12010.1p  transcript_id AT1G12010.1  
At1g12013	chr1:004058287	0.0	W/4058287-4058416	AT1G12013.1  snoRNA  gene_syn SMALL NUCLEOLAR RNA 111, SNOR111  gene SNOR111  function Encodes a H/ACA-box snoRNA (snoR111). Gb: AJ505682  go_component box H/ACA snoRNP complex|GO:0031429||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product SNOR111 (SMALL NUCLEOLAR RNA 111); snoRNA  transcript_id AT1G12013.1  
At1g12015	chr1:004058487	0.0	W/4058487-4058576	AT1G12015.1  snoRNA  gene_syn 51018.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT1G12015.1  
At1g12020	chr1:004062625	0.0	C/4062625-4063305	AT1G12020.1  CDS  gene_syn F12F1.11, F12F1_11  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62422.1); Has 50 Blast hits to 49 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G12020.1p  transcript_id AT1G12020.1  protein_id AT1G12020.1p  transcript_id AT1G12020.1  
At1g12030	chr1:004065944	0.0	C/4065944-4066319,4064751-4065262	AT1G12030.1  CDS  gene_syn F12F1.10, F12F1_10  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: pollen tube, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62420.1); Has 213 Blast hits to 213 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 211; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G12030.1p  transcript_id AT1G12030.1  protein_id AT1G12030.1p  transcript_id AT1G12030.1  
At1g12040	chr1:004070160	0.0	W/4070160-4072394	AT1G12040.1  CDS  gene_syn F12F1.9, F12F1_9, LEUCINE-RICH REPEAT/EXTENSIN 1, LRX1  gene LRX1  function encodes a a chimeric leucine-rich repeat/extensin protein that regulates root hair morphogenesis and elongation. Null mutants develop root hairs that frequently abort, swell, or branch. Gene is expressed in root hair cells and protein is specifically localized in the wall of the hair proper.  go_component plant-type cell wall|GO:0009505|11331608|IDA  go_process cell morphogenesis involved in differentiation|GO:0000904|11331608|IMP  go_process unidimensional cell growth|GO:0009826|11331608|IMP  go_process trichoblast differentiation|GO:0010054|11331608|IMP  go_function structural constituent of cell wall|GO:0005199|12644681|ISS  go_function protein binding|GO:0005515|12644681|ISS  go_function histidine phosphotransfer kinase activity|GO:0009927||NAS  product LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1); histidine phosphotransfer kinase/ protein binding / structural constituent of cell wall  note LEUCINE-RICH REPEAT/EXTENSIN 1 (LRX1); FUNCTIONS IN: structural constituent of cell wall, protein binding, histidine phosphotransfer kinase activity; INVOLVED IN: trichoblast differentiation, cell morphogenesis involved in differentiation, unidimensional cell growth; LOCATED IN: plant-type cell wall; EXPRESSED IN: trichoblast, root hair, root; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Extensin-like region (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: LRX2 (LEUCINE-RICH REPEAT/EXTENSIN 2); protein binding / structural constituent of cell wall (TAIR:AT1G62440.1); Has 302149 Blast hits to 77651 proteins in 2210 species: Archae - 768; Bacteria - 46896; Metazoa - 113704; Fungi - 36867; Plants - 60789; Viruses - 7191; Other Eukaryotes - 35934 (source: NCBI BLink).  protein_id AT1G12040.1p  transcript_id AT1G12040.1  protein_id AT1G12040.1p  transcript_id AT1G12040.1  
At1g12050	chr1:004072904	0.0	W/4072904-4073110,4073486-4073564,4073658-4073716,4073809-4073933,4074030-4074104,4074348-4074423,4074542-4074641,4074725-4074784,4074879-4074949,4075028-4075090,4075195-4075259,4075343-4075439,4075534-4075659,4075794-4075856	AT1G12050.1  CDS  gene_syn F12F1.8, F12F1_8  go_process metabolic process|GO:0008152||IEA  go_process aromatic amino acid family metabolic process|GO:0009072||IEA  go_function catalytic activity|GO:0003824||IEA  go_function fumarylacetoacetase activity|GO:0004334||IEA  go_component cellular_component|GO:0005575||ND  go_process aromatic amino acid family metabolic process|GO:0009072||ISS  go_function fumarylacetoacetase activity|GO:0004334||ISS  product fumarylacetoacetase, putative  note fumarylacetoacetase, putative; FUNCTIONS IN: fumarylacetoacetase activity, catalytic activity; INVOLVED IN: aromatic amino acid family metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fumarylacetoacetase, C-terminal-like (InterPro:IPR002529), Fumarylacetoacetase, C-terminal-related (InterPro:IPR011234), Fumarylacetoacetase, N-terminal (InterPro:IPR015377), Fumarylacetoacetase (InterPro:IPR005959); Has 2908 Blast hits to 2904 proteins in 587 species: Archae - 79; Bacteria - 1504; Metazoa - 254; Fungi - 107; Plants - 28; Viruses - 0; Other Eukaryotes - 936 (source: NCBI BLink).  protein_id AT1G12050.1p  transcript_id AT1G12050.1  protein_id AT1G12050.1p  transcript_id AT1G12050.1  
At1g12060	chr1:004076334	0.0	W/4076334-4076910,4076954-4077024	AT1G12060.1  CDS  gene_syn ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 5, ATBAG5, F12F1.7, F12F1_7  gene ATBAG5  function A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process apoptosis|GO:0006915||ISS  go_process regulation of apoptosis|GO:0042981||ISS  go_function protein binding|GO:0005515||ISS  product ATBAG5 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 5); protein binding  note ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 5 (ATBAG5); FUNCTIONS IN: protein binding; INVOLVED IN: regulation of apoptosis, apoptosis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Apoptosis regulator Bcl-2 protein, BAG (InterPro:IPR003103), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: BAG6 (BCL-2-ASSOCIATED ATHANOGENE 6); calmodulin binding / protein binding (TAIR:AT2G46240.1); Has 44 Blast hits to 44 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G12060.1p  transcript_id AT1G12060.1  protein_id AT1G12060.1p  transcript_id AT1G12060.1  
At1g12064	chr1:004077705	0.0	C/4077705-4078034	AT1G12064.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 4 Blast hits to 4 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G12064.1p  transcript_id AT1G12064.1  protein_id AT1G12064.1p  transcript_id AT1G12064.1  
At1g12070	chr1:004079924	0.0	C/4079924-4080106,4079766-4079832,4079364-4079588,4079147-4079271,4078913-4078984	AT1G12070.1  CDS  gene_syn F12F1.5, F12F1_5  go_component cytoplasm|GO:0005737||IEA  go_function Rho GDP-dissociation inhibitor activity|GO:0005094||IEA  go_component cytoplasm|GO:0005737||ISS  go_process biological_process|GO:0008150||ND  go_function Rho GDP-dissociation inhibitor activity|GO:0005094||ISS  product Rho GDP-dissociation inhibitor family protein  note Rho GDP-dissociation inhibitor family protein; FUNCTIONS IN: Rho GDP-dissociation inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cytoplasm; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), RHO protein GDP dissociation inhibitor (InterPro:IPR000406); BEST Arabidopsis thaliana protein match is: Rho GDP-dissociation inhibitor family protein (TAIR:AT1G62450.1); Has 496 Blast hits to 496 proteins in 128 species: Archae - 0; Bacteria - 0; Metazoa - 282; Fungi - 109; Plants - 66; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT1G12070.1p  transcript_id AT1G12070.1  protein_id AT1G12070.1p  transcript_id AT1G12070.1  
At1g12080	chr1:004084289	0.0	W/4084289-4084303,4084487-4084567,4084670-4084888	AT1G12080.1  CDS  gene_syn F12F1.4, F12F1_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 8910 Blast hits to 3057 proteins in 337 species: Archae - 53; Bacteria - 687; Metazoa - 3963; Fungi - 449; Plants - 285; Viruses - 240; Other Eukaryotes - 3233 (source: NCBI BLink).  protein_id AT1G12080.1p  transcript_id AT1G12080.1  protein_id AT1G12080.1p  transcript_id AT1G12080.1  
At1g12080	chr1:004084289	0.0	W/4084289-4084303,4084487-4084888	AT1G12080.2  CDS  gene_syn F12F1.4, F12F1_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 22005 Blast hits to 8094 proteins in 744 species: Archae - 137; Bacteria - 2550; Metazoa - 7712; Fungi - 1615; Plants - 613; Viruses - 338; Other Eukaryotes - 9040 (source: NCBI BLink).  protein_id AT1G12080.2p  transcript_id AT1G12080.2  protein_id AT1G12080.2p  transcript_id AT1G12080.2  
At1g12090	chr1:004090176	0.0	C/4090176-4090589	AT1G12090.1  CDS  gene_syn ELP, EXTENSIN-LIKE PROTEIN, F12F1.3, F12F1_3  gene ELP  function extensin-like protein (ELP)  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product ELP (EXTENSIN-LIKE PROTEIN); lipid binding  note EXTENSIN-LIKE PROTEIN (ELP); FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT1G62510.1); Has 547 Blast hits to 543 proteins in 52 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 541; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G12090.1p  transcript_id AT1G12090.1  protein_id AT1G12090.1p  transcript_id AT1G12090.1  
At1g12100	chr1:004095246	0.0	W/4095246-4095273,4095475-4095845	AT1G12100.1  CDS  gene_syn F12F1.2, F12F1_2  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product lipid binding  note lipid binding; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, embryo, flower, seed, leaf; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: ELP (EXTENSIN-LIKE PROTEIN); lipid binding (TAIR:AT1G12090.1); Has 527 Blast hits to 523 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 527; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G12100.1p  transcript_id AT1G12100.1  protein_id AT1G12100.1p  transcript_id AT1G12100.1  
At1g12110	chr1:004105341	0.0	W/4105341-4105455,4105641-4105818,4105913-4105952,4106127-4106701,4108426-4109290	AT1G12110.1  CDS  gene_syn ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, ATNRT1, ATNRT1.1, B-1, CHL1, CHL1-1, CHLORATE/NITRATE TRANSPORTER, CHLORINA 1, F12F1.1, F12F1_1, NITRATE TRANSPORTER 1, NITRATE TRANSPORTER 1.1, NITRATE/CHLORATE TRANSPORTER, NRT1, NRT1.1  gene NRT1.1  function Encodes NRT1.1 (CHL1), a dual-affinity nitrate transporter. The protein is expressed in guard cells and function in stomatal opening. Mutants have less transpiration and are more tolerant to drought. Expressed in lateral roots. Involved in nitrate signaling which enables the plant root system to detect and exploit nitrate-rich soil patches. Comparing to the wild type, the mutant displays a strongly decreased lateral root proliferation phenotype in nitrate rich patches on growth medium.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to water deprivation|GO:0009414|12509525|IMP  go_process response to nitrate|GO:0010167|17148611|IMP  go_process nitrate transport|GO:0015706|9844028|IMP  go_function transporter activity|GO:0005215||ISS  go_function nitrate transmembrane transporter activity|GO:0015112|9844028|IMP  product NRT1.1; nitrate transmembrane transporter/ transporter  note NRT1.1; FUNCTIONS IN: transporter activity, nitrate transmembrane transporter activity; INVOLVED IN: nitrate transport, response to water deprivation, response to nitrate; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region, conserved site (InterPro:IPR018456), TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter (NTP2) (TAIR:AT2G26690.1); Has 3973 Blast hits to 3901 proteins in 700 species: Archae - 0; Bacteria - 1734; Metazoa - 442; Fungi - 239; Plants - 1136; Viruses - 0; Other Eukaryotes - 422 (source: NCBI BLink).  protein_id AT1G12110.1p  transcript_id AT1G12110.1  protein_id AT1G12110.1p  transcript_id AT1G12110.1  
At1g12120	chr1:004116356	0.0	C/4116356-4116469,4114933-4116270	AT1G12120.1  CDS  gene_syn T28K15.14, T28K15_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF863, plant (InterPro:IPR008581); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62530.2); Has 113 Blast hits to 100 proteins in 30 species: Archae - 0; Bacteria - 2; Metazoa - 13; Fungi - 14; Plants - 54; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G12120.1p  transcript_id AT1G12120.1  protein_id AT1G12120.1p  transcript_id AT1G12120.1  
At1g12130	chr1:004118594	0.0	W/4118594-4119146,4119632-4119702,4119819-4119965,4120075-4120293,4120449-4120871	AT1G12130.1  CDS  gene_syn T28K15.13, T28K15_13  go_function flavin-containing monooxygenase activity|GO:0004499||IEA  go_function FAD binding|GO:0050660||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_function monooxygenase activity|GO:0004497||ISS  product flavin-containing monooxygenase family protein / FMO family protein  note flavin-containing monooxygenase family protein / FMO family protein; FUNCTIONS IN: NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960); BEST Arabidopsis thaliana protein match is: flavin-containing monooxygenase family protein / FMO family protein (TAIR:AT1G12160.1); Has 10011 Blast hits to 9530 proteins in 1047 species: Archae - 46; Bacteria - 4141; Metazoa - 1159; Fungi - 1018; Plants - 449; Viruses - 0; Other Eukaryotes - 3198 (source: NCBI BLink).  protein_id AT1G12130.1p  transcript_id AT1G12130.1  protein_id AT1G12130.1p  transcript_id AT1G12130.1  
At1g12140	chr1:004121386	0.0	W/4121386-4121932,4122016-4122086,4122454-4122606,4122674-4122892,4122977-4123366	AT1G12140.1  CDS  gene_syn FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 5, FMO GS-OX5, T28K15.12, T28K15_12  gene FMO GS-OX5  function belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates  go_process glucosinolate biosynthetic process|GO:0019761|18799661|IMP  go_function monooxygenase activity|GO:0004497||ISS  go_function flavin-containing monooxygenase activity|GO:0004499|18799661|IDA  go_function 8-methylthiopropyl glucosinolate S-oxygenase activity|GO:0080107|18799661|IDA  go_function 8-methylthiopropyl glucosinolate S-oxygenase activity|GO:0080107|18799661|IMP  product FMO GS-OX5 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 5); 8-methylthiopropyl glucosinolate S-oxygenase/ flavin-containing monooxygenase/ monooxygenase  note FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 5 (FMO GS-OX5); FUNCTIONS IN: monooxygenase activity, 8-methylthiopropyl glucosinolate S-oxygenase activity, flavin-containing monooxygenase activity; INVOLVED IN: glucosinolate biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Adrenodoxin reductase (InterPro:IPR000759), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: FMO GS-OX4 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 4); 4-methylthiopropyl glucosinolate S-oxygenase/ 8-methylthiopropyl glucosinolate S-oxygenase/ flavin-containing monooxygenase/ monooxygenase (TAIR:AT1G62570.1); Has 8772 Blast hits to 8338 proteins in 846 species: Archae - 12; Bacteria - 3382; Metazoa - 1081; Fungi - 1002; Plants - 433; Viruses - 0; Other Eukaryotes - 2862 (source: NCBI BLink).  protein_id AT1G12140.1p  transcript_id AT1G12140.1  protein_id AT1G12140.1p  transcript_id AT1G12140.1  
At1g12140	chr1:004121386	0.0	W/4121386-4121932,4122022-4122086,4122454-4122606,4122674-4122892,4122977-4123366	AT1G12140.2  CDS  gene_syn FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 5, FMO GS-OX5, T28K15.12, T28K15_12  gene FMO GS-OX5  function belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates  go_process glucosinolate biosynthetic process|GO:0019761|18799661|IMP  go_function monooxygenase activity|GO:0004497||ISS  go_function flavin-containing monooxygenase activity|GO:0004499|18799661|IDA  go_function 8-methylthiopropyl glucosinolate S-oxygenase activity|GO:0080107|18799661|IDA  go_function 8-methylthiopropyl glucosinolate S-oxygenase activity|GO:0080107|18799661|IMP  product FMO GS-OX5 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 5); 8-methylthiopropyl glucosinolate S-oxygenase/ flavin-containing monooxygenase/ monooxygenase  note FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 5 (FMO GS-OX5); FUNCTIONS IN: monooxygenase activity, 8-methylthiopropyl glucosinolate S-oxygenase activity, flavin-containing monooxygenase activity; INVOLVED IN: glucosinolate biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: FMO GS-OX4 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 4); 4-methylthiopropyl glucosinolate S-oxygenase/ 8-methylthiopropyl glucosinolate S-oxygenase/ flavin-containing monooxygenase/ monooxygenase (TAIR:AT1G62570.1); Has 7974 Blast hits to 7543 proteins in 832 species: Archae - 12; Bacteria - 3000; Metazoa - 1045; Fungi - 807; Plants - 432; Viruses - 0; Other Eukaryotes - 2678 (source: NCBI BLink).  protein_id AT1G12140.2p  transcript_id AT1G12140.2  protein_id AT1G12140.2p  transcript_id AT1G12140.2  
At1g12150	chr1:004125158	0.0	C/4125158-4125328,4123530-4125005	AT1G12150.1  CDS  gene_syn T28K15.11, T28K15_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT4G17210.1); Has 136823 Blast hits to 68042 proteins in 2292 species: Archae - 1576; Bacteria - 22165; Metazoa - 64188; Fungi - 9966; Plants - 5333; Viruses - 600; Other Eukaryotes - 32995 (source: NCBI BLink).  protein_id AT1G12150.1p  transcript_id AT1G12150.1  protein_id AT1G12150.1p  transcript_id AT1G12150.1  
At1g12160	chr1:004126068	0.0	W/4126068-4126611,4126694-4126764,4126868-4127011,4127093-4127311,4127662-4128090	AT1G12160.1  CDS  gene_syn T28K15.10, T28K15_10  go_function flavin-containing monooxygenase activity|GO:0004499||IEA  go_function FAD binding|GO:0050660||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function monooxygenase activity|GO:0004497||ISS  product flavin-containing monooxygenase family protein / FMO family protein  note flavin-containing monooxygenase family protein / FMO family protein; FUNCTIONS IN: NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960); BEST Arabidopsis thaliana protein match is: flavin-containing monooxygenase family protein / FMO family protein (TAIR:AT1G12130.1); Has 6040 Blast hits to 5603 proteins in 635 species: Archae - 2; Bacteria - 2116; Metazoa - 986; Fungi - 696; Plants - 409; Viruses - 0; Other Eukaryotes - 1831 (source: NCBI BLink).  protein_id AT1G12160.1p  transcript_id AT1G12160.1  protein_id AT1G12160.1p  transcript_id AT1G12160.1  
At1g12170	chr1:004128607	0.0	C/4128607-4129701	AT1G12170.1  CDS  gene_syn T28K15.9, T28K15_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G12190.1); Has 908 Blast hits to 884 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 906; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G12170.1p  transcript_id AT1G12170.1  protein_id AT1G12170.1p  transcript_id AT1G12170.1  
At1g12180	chr1:004130454	0.0	W/4130454-4130499,4130604-4130917	AT1G12180.1  CDS  gene_syn T28K15.15, T28K15_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo; EXPRESSED DURING: C globular stage; BEST Arabidopsis thaliana protein match is: heat shock protein-related (TAIR:AT5G47600.1); Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G12180.1p  transcript_id AT1G12180.1  protein_id AT1G12180.1p  transcript_id AT1G12180.1  
At1g12190	chr1:004132967	0.0	C/4132967-4134094	AT1G12190.1  CDS  gene_syn T28K15.8, T28K15_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G12170.1); Has 703 Blast hits to 685 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 699; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G12190.1p  transcript_id AT1G12190.1  protein_id AT1G12190.1p  transcript_id AT1G12190.1  
At1g12200	chr1:004137627	0.0	W/4137627-4138188,4138416-4138486,4138603-4138755,4138863-4138945,4139061-4139196,4139341-4139517,4139620-4139835	AT1G12200.1  CDS  gene_syn T28K15.7, T28K15_7  go_function flavin-containing monooxygenase activity|GO:0004499||IEA  go_function FAD binding|GO:0050660||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function monooxygenase activity|GO:0004497||ISS  product flavin-containing monooxygenase family protein / FMO family protein  note flavin-containing monooxygenase family protein / FMO family protein; FUNCTIONS IN: NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960); BEST Arabidopsis thaliana protein match is: flavin-containing monooxygenase family protein / FMO family protein (TAIR:AT1G62580.1); Has 9107 Blast hits to 8683 proteins in 970 species: Archae - 28; Bacteria - 4021; Metazoa - 1067; Fungi - 1001; Plants - 456; Viruses - 0; Other Eukaryotes - 2534 (source: NCBI BLink).  protein_id AT1G12200.1p  transcript_id AT1G12200.1  protein_id AT1G12200.1p  transcript_id AT1G12200.1  
At1g12210	chr1:004140948	0.0	W/4140948-4143605	AT1G12210.1  CDS  gene_syn RFL1, RPS5-like 1, T28K15.6, T28K15_6  gene RFL1  function RFL1 has high sequence similarity to the adjacent disease resistance (R) gene RPS5.  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_process defense response|GO:0006952||ISS  go_process response to bacterium|GO:0009617|10101179|ISS  product RFL1 (RPS5-like 1); ATP binding / protein binding  note RPS5-like 1 (RFL1); FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: N-terminal protein myristoylation, response to bacterium, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, stem, embryo, sepal, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: RPS5 (RESISTANT TO P. SYRINGAE 5); nucleotide binding (TAIR:AT1G12220.1); Has 12469 Blast hits to 10901 proteins in 466 species: Archae - 19; Bacteria - 832; Metazoa - 2530; Fungi - 149; Plants - 8664; Viruses - 0; Other Eukaryotes - 275 (source: NCBI BLink).  protein_id AT1G12210.1p  transcript_id AT1G12210.1  protein_id AT1G12210.1p  transcript_id AT1G12210.1  
At1g12211	chr1:004143866	0.0	C/4143866-4144114	AT1G12211.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G12211.1p  transcript_id AT1G12211.1  protein_id AT1G12211.1p  transcript_id AT1G12211.1  
At1g12220	chr1:004145011	0.0	W/4145011-4147680	AT1G12220.1  CDS  gene_syn DISEASE RESISTANCE PROTEIN RPS5, RESISTANT TO P. SYRINGAE 5, RPS5, T28K15.5, T28K15_5  gene RPS5  function Resistance gene, mediates resistance against the bacterial pathogen Pseudomonas syringae. Contains a putative nucleotide binding site composed of kinase-1a (or P-loop), kinase-2a, and putative kinase-3a domains, 13 imperfect leucine-rich repeats, a potential leucine zipper, and two uncharacterized motifs that are well conserved in products of previously isolated R genes. Confers resistance to Pseudomonas syringae strains that express avrPphB.  go_component intracellular|GO:0005622|9724691|ISS  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_process defense response|GO:0006952|11846877|TAS  go_process defense response|GO:0006952|9724691|IMP  go_process plant-type hypersensitive response|GO:0009626|10224270|IMP  go_process defense response to bacterium, incompatible interaction|GO:0009816|17277084|IDA  go_function nucleotide binding|GO:0000166|9724691|IMP  product RPS5 (RESISTANT TO P. SYRINGAE 5); nucleotide binding  note RESISTANT TO P. SYRINGAE 5 (RPS5); FUNCTIONS IN: nucleotide binding; INVOLVED IN: defense response to bacterium, incompatible interaction, N-terminal protein myristoylation, plant-type hypersensitive response, defense response; LOCATED IN: intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT1G12280.1); Has 11947 Blast hits to 11086 proteins in 481 species: Archae - 23; Bacteria - 555; Metazoa - 2202; Fungi - 149; Plants - 8793; Viruses - 0; Other Eukaryotes - 225 (source: NCBI BLink).  protein_id AT1G12220.1p  transcript_id AT1G12220.1  protein_id AT1G12220.1p  transcript_id AT1G12220.1  
At1g12230	chr1:004148050	0.0	W/4148050-4148103,4148194-4148335,4148739-4148817,4149080-4149155,4149250-4149333,4149427-4149531,4149621-4149701,4149777-4149841,4149936-4150005,4150079-4150254,4150339-4150477,4150562-4150708	AT1G12230.1  CDS  gene_syn T28K15.4, T28K15_4  go_component chloroplast|GO:0009507|18431481|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process 5-phosphoribose 1-diphosphate biosynthetic process|GO:0006015||IEA  go_process metabolic process|GO:0008152||IEA  go_process pentose-phosphate shunt, non-oxidative branch|GO:0009052||IEA  go_process glucose catabolic process to lactate and acetate|GO:0019658||IEA  go_function catalytic activity|GO:0003824||IEA  go_function transaldolase activity|GO:0004801||ISS  product transaldolase, putative  note transaldolase, putative; FUNCTIONS IN: transaldolase activity, catalytic activity; INVOLVED IN: glucose catabolic process to lactate and acetate, 5-phosphoribose 1-diphosphate biosynthetic process, carbohydrate metabolic process, metabolic process, pentose-phosphate shunt, non-oxidative branch; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Transaldolase (InterPro:IPR001585); Has 4687 Blast hits to 4687 proteins in 1248 species: Archae - 40; Bacteria - 2981; Metazoa - 141; Fungi - 151; Plants - 60; Viruses - 7; Other Eukaryotes - 1307 (source: NCBI BLink).  protein_id AT1G12230.1p  transcript_id AT1G12230.1  protein_id AT1G12230.1p  transcript_id AT1G12230.1  
At1g12240	chr1:004153699	0.0	W/4153699-4154101,4154430-4154438,4155090-4155334,4155840-4156457,4156564-4156976,4157062-4157149,4157239-4157457	AT1G12240.1  CDS  gene_syn ATBETAFRUCT4, T28K15.3, T28K15_3, VAC-INV, VACUOLAR INVERTASE  gene ATBETAFRUCT4  go_component vacuole|GO:0005773|15539469|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process sucrose catabolic process, using beta-fructofuranosidase|GO:0019575||IEA  go_component vacuole|GO:0005773|9332372|ISS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function beta-fructofuranosidase activity|GO:0004564|9332372|ISS  product ATBETAFRUCT4; beta-fructofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds  note ATBETAFRUCT4; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, beta-fructofuranosidase activity; INVOLVED IN: sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process; LOCATED IN: vacuole, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 32 (InterPro:IPR001362), Glycoside hydrolase, family 32, active site (InterPro:IPR018053), Glycosyl hydrolases family 32, N-terminal (InterPro:IPR013148), Glycosyl hydrolase family 32, C-terminal (InterPro:IPR013189), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar (TAIR:AT1G62660.1); Has 2187 Blast hits to 2159 proteins in 632 species: Archae - 4; Bacteria - 1169; Metazoa - 5; Fungi - 196; Plants - 637; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).  protein_id AT1G12240.1p  transcript_id AT1G12240.1  protein_id AT1G12240.1p  transcript_id AT1G12240.1  
At1g12244	chr1:004157719	0.0	W/4157719-4158039,4158119-4158291,4158367-4158435,4158618-4158669,4158744-4158893	AT1G12244.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_process DNA repair|GO:0006281||IEA  go_process DNA recombination|GO:0006310||IEA  go_process response to DNA damage stimulus|GO:0006974||IEA  go_function recombinase activity|GO:0000150||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function nuclease activity|GO:0004518||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  product DNA binding / hydrolase, acting on ester bonds / nuclease/ nucleic acid binding / recombinase  note DNA binding / hydrolase, acting on ester bonds / nuclease/ nucleic acid binding / recombinase; FUNCTIONS IN: hydrolase activity, acting on ester bonds, recombinase activity, DNA binding, nuclease activity, nucleic acid binding; INVOLVED IN: DNA repair, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, DNA recombination, response to DNA damage stimulus; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Resolvase, RNase H-like fold (InterPro:IPR006641), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Resolvase, holliday junction-type, YqgF-like (InterPro:IPR005227); Has 2009 Blast hits to 2009 proteins in 796 species: Archae - 0; Bacteria - 1622; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 372 (source: NCBI BLink).  protein_id AT1G12244.1p  transcript_id AT1G12244.1  protein_id AT1G12244.1p  transcript_id AT1G12244.1  
At1g12250	chr1:004159287	0.0	W/4159287-4159450,4159565-4159750,4159854-4159883,4160064-4160170,4160734-4160768,4160862-4160990,4161078-4161269	AT1G12250.1  CDS  gene_syn T28K15.2, T28K15_2  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product thylakoid lumenal protein-related  note thylakoid lumenal protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentapeptide repeat (InterPro:IPR001646); BEST Arabidopsis thaliana protein match is: thylakoid lumenal 15 kDa protein, chloroplast (TAIR:AT2G44920.2); Has 6004 Blast hits to 3393 proteins in 359 species: Archae - 127; Bacteria - 4195; Metazoa - 0; Fungi - 0; Plants - 106; Viruses - 4; Other Eukaryotes - 1572 (source: NCBI BLink).  protein_id AT1G12250.1p  transcript_id AT1G12250.1  protein_id AT1G12250.1p  transcript_id AT1G12250.1  
At1g12250	chr1:004159623	0.0	W/4159623-4159750,4159854-4159883,4160064-4160170,4160734-4160768,4160862-4160990,4161078-4161269	AT1G12250.2  CDS  gene_syn T28K15.2, T28K15_2  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product thylakoid lumenal protein-related  note thylakoid lumenal protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentapeptide repeat (InterPro:IPR001646); BEST Arabidopsis thaliana protein match is: thylakoid lumenal 15 kDa protein, chloroplast (TAIR:AT2G44920.2); Has 6077 Blast hits to 3352 proteins in 358 species: Archae - 136; Bacteria - 4250; Metazoa - 0; Fungi - 0; Plants - 106; Viruses - 4; Other Eukaryotes - 1581 (source: NCBI BLink).  protein_id AT1G12250.2p  transcript_id AT1G12250.2  protein_id AT1G12250.2p  transcript_id AT1G12250.2  
At1g12260	chr1:004164327	0.0	C/4164327-4164486,4163959-4164230,4163058-4163813	AT1G12260.1  CDS  gene_syn ANAC007, ARABIDOPSIS NAC 007, EMB2749, EMBRYO DEFECTIVE 2749, T28K15.1, T28K15_1, VASCULAR RELATED NAC-DOMAIN PROTEIN 4, VND4  gene ANAC007  function Encodes a NAC-domain transcription factor. Expressed in the vascular tissue.  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ANAC007 (ARABIDOPSIS NAC 007); transcription factor  note ARABIDOPSIS NAC 007 (ANAC007); FUNCTIONS IN: transcription factor activity; INVOLVED IN: embryonic development ending in seed dormancy, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC026; transcription factor (TAIR:AT1G62700.1); Has 1749 Blast hits to 1747 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 2; Plants - 1611; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT1G12260.1p  transcript_id AT1G12260.1  protein_id AT1G12260.1p  transcript_id AT1G12260.1  
At1g12270	chr1:004172105	0.0	W/4172105-4172983,4173119-4173407,4173550-4173635,4173737-4173960,4174045-4174111,4174211-4174270,4174462-4174575	AT1G12270.1  CDS  gene_syn F5O11.2, F5O11_2  go_function binding|GO:0005488||IEA  go_process response to stress|GO:0006950||ISS  product stress-inducible protein, putative  note stress-inducible protein, putative; FUNCTIONS IN: binding; INVOLVED IN: response to stress; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT1G62740.1); Has 29103 Blast hits to 13265 proteins in 843 species: Archae - 964; Bacteria - 7395; Metazoa - 8026; Fungi - 1794; Plants - 2170; Viruses - 39; Other Eukaryotes - 8715 (source: NCBI BLink).  protein_id AT1G12270.1p  transcript_id AT1G12270.1  protein_id AT1G12270.1p  transcript_id AT1G12270.1  
At1g12280	chr1:004174875	0.0	C/4174875-4177559	AT1G12280.1  CDS  gene_syn F5O11.34, F5O11_34  go_component endomembrane system|GO:0012505||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative  note disease resistance protein (CC-NBS-LRR class), putative; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response, apoptosis; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: RPS5 (RESISTANT TO P. SYRINGAE 5); nucleotide binding (TAIR:AT1G12220.1); Has 12422 Blast hits to 11239 proteins in 468 species: Archae - 23; Bacteria - 619; Metazoa - 1833; Fungi - 145; Plants - 9548; Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink).  protein_id AT1G12280.1p  transcript_id AT1G12280.1  protein_id AT1G12280.1p  transcript_id AT1G12280.1  
At1g12290	chr1:004178593	0.0	C/4178593-4181121	AT1G12290.2  CDS  gene_syn F5O11.3, F5O11_3  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative  note disease resistance protein (CC-NBS-LRR class), putative; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response; EXPRESSED IN: stem, inflorescence meristem, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT4G10780.1).  protein_id AT1G12290.2p  transcript_id AT1G12290.2  protein_id AT1G12290.2p  transcript_id AT1G12290.2  
At1g12290	chr1:004178593	0.0	C/4178593-4181247	AT1G12290.1  CDS  gene_syn F5O11.3, F5O11_3  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative  note disease resistance protein (CC-NBS-LRR class), putative; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response; EXPRESSED IN: stem, inflorescence meristem, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT4G10780.1); Has 11680 Blast hits to 10749 proteins in 474 species: Archae - 22; Bacteria - 645; Metazoa - 1806; Fungi - 156; Plants - 8840; Viruses - 4; Other Eukaryotes - 207 (source: NCBI BLink).  protein_id AT1G12290.1p  transcript_id AT1G12290.1  protein_id AT1G12290.1p  transcript_id AT1G12290.1  
At1g12294	chr1:004182132	0.0	C/4182132-4182299	AT1G12294.1  miRNA  gene_syn MICRORNA472A, MIR472A  gene MIR472A  function Encodes a microRNA that targets several CC-NBS-LRR family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUUUUCCUACUCCGCCCAUAC  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR472A (MICRORNA472A); miRNA  transcript_id AT1G12294.1  
At1g12300	chr1:004184163	0.0	C/4184163-4186076	AT1G12300.1  CDS  gene_syn F5O11.4, F5O11_4  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12775.1); Has 28084 Blast hits to 6265 proteins in 197 species: Archae - 6; Bacteria - 18; Metazoa - 968; Fungi - 767; Plants - 24757; Viruses - 0; Other Eukaryotes - 1568 (source: NCBI BLink).  protein_id AT1G12300.1p  transcript_id AT1G12300.1  protein_id AT1G12300.1p  transcript_id AT1G12300.1  
At1g12310	chr1:004187500	0.0	C/4187500-4187946	AT1G12310.1  CDS  gene_syn F5O11.35, F5O11_35  go_component nucleus|GO:0005634|14617066|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function calcium ion binding|GO:0005509||IEA  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calmodulin, putative  note calmodulin, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin, putative (TAIR:AT1G62820.1); Has 12140 Blast hits to 10293 proteins in 1212 species: Archae - 0; Bacteria - 26; Metazoa - 5264; Fungi - 3120; Plants - 2025; Viruses - 0; Other Eukaryotes - 1705 (source: NCBI BLink).  protein_id AT1G12310.1p  transcript_id AT1G12310.1  protein_id AT1G12310.1p  transcript_id AT1G12310.1  
At1g12320	chr1:004189424	0.0	W/4189424-4189483,4189631-4190209	AT1G12320.1  CDS  gene_syn F5O11.5, F5O11_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1442 (InterPro:IPR009902); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62840.1); Has 43 Blast hits to 43 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G12320.1p  transcript_id AT1G12320.1  protein_id AT1G12320.1p  transcript_id AT1G12320.1  
At1g12330	chr1:004194673	0.0	W/4194673-4194747,4195105-4196226,4196307-4196627	AT1G12330.1  CDS  gene_syn F5O11.6, F5O11_6  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12900.1); Has 160 Blast hits to 160 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 12; Plants - 131; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G12330.1p  transcript_id AT1G12330.1  protein_id AT1G12330.1p  transcript_id AT1G12330.1  
At1g12340	chr1:004197396	0.0	W/4197396-4197443,4197518-4197699,4197779-4197901,4197996-4198032	AT1G12340.1  CDS  gene_syn F5O11.7, F5O11_7  go_component membrane|GO:0016020||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_component membrane|GO:0016020||ISS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular signaling cascade; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Cornichon (InterPro:IPR003377); BEST Arabidopsis thaliana protein match is: cornichon family protein (TAIR:AT1G12390.1); Has 463 Blast hits to 463 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 278; Fungi - 110; Plants - 41; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT1G12340.1p  transcript_id AT1G12340.1  protein_id AT1G12340.1p  transcript_id AT1G12340.1  
At1g12350	chr1:004198870	0.0	W/4198870-4198999,4199084-4199201,4199300-4199344,4199445-4199530,4199633-4199685,4199784-4199843,4200005-4200106,4200191-4200310,4200394-4200633	AT1G12350.1  CDS  gene_syn 4-phospho-panto-thenoylcysteine synthetase, ATCOAB, F5O11.36, F5O11_36  gene ATCOAB  function At1g12350 encodes phosphopantothenoylcysteine synthetase (phosphopantothenoylcysteine ligase). Its molecular function was shown to add cysteine forming (R)-4 -phospho-N-pantothenoylcysteine (PPC)  go_component chloroplast|GO:0009507||IEA  go_process coenzyme A biosynthetic process|GO:0015937|12860978|IDA  go_function catalytic activity|GO:0003824||ISS  go_function phosphopantothenate--cysteine ligase activity|GO:0004632|12860978|IDA  product ATCOAB (4-phospho-panto-thenoylcysteine synthetase); catalytic/ phosphopantothenate--cysteine ligase  note 4-phospho-panto-thenoylcysteine synthetase (ATCOAB); FUNCTIONS IN: phosphopantothenate--cysteine ligase activity, catalytic activity; INVOLVED IN: coenzyme A biosynthetic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: DNA/pantothenate metabolism flavoprotein, C-terminal (InterPro:IPR007085); BEST Arabidopsis thaliana protein match is: DNA/panthothenate metabolism flavoprotein family protein (TAIR:AT5G02080.1); Has 411 Blast hits to 393 proteins in 196 species: Archae - 22; Bacteria - 87; Metazoa - 109; Fungi - 90; Plants - 28; Viruses - 4; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT1G12350.1p  transcript_id AT1G12350.1  protein_id AT1G12350.1p  transcript_id AT1G12350.1  
At1g12360	chr1:004201172	0.0	W/4201172-4201244,4201952-4202010,4202114-4202195,4202288-4202366,4202448-4202498,4202594-4202690,4202775-4202807,4202973-4203098,4203175-4203366,4203511-4203594,4203684-4203782,4203865-4203938,4204172-4204268,4204495-4204620,4204712-4204807,4204891-4205010,4205089-4205163,4205257-4205456,4205702-4205792,4205895-4205984,4206088-4206144	AT1G12360.1  CDS  gene_syn F5O11.8, F5O11_8, KEU, keule  gene KEU  function encodes a Sec1 protein and expressed throughout the plant. physically interacts with Syntaxin1 and is required for cytokinesis.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component peripheral to membrane of membrane fraction|GO:0000300|11157980|IDA  go_component cytosol|GO:0005829|11157980|IDA  go_process cytokinesis|GO:0000910|11157980|IMP  go_process protein secretion|GO:0009306||ISS  go_function protein transporter activity|GO:0008565||ISS  product KEU (keule); protein transporter  note keule (KEU); FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein secretion, cytokinesis; LOCATED IN: cytosol, peripheral to membrane of membrane fraction, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); BEST Arabidopsis thaliana protein match is: SEC1B; protein transporter (TAIR:AT4G12120.1); Has 1324 Blast hits to 1303 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 632; Fungi - 326; Plants - 112; Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink).  protein_id AT1G12360.1p  transcript_id AT1G12360.1  protein_id AT1G12360.1p  transcript_id AT1G12360.1  
At1g12370	chr1:004208534	0.0	C/4208534-4208842,4207971-4208317,4207641-4207881,4207368-4207525,4207243-4207279,4207112-4207152,4206944-4207025,4206798-4206869,4206500-4206685	AT1G12370.1  CDS  gene_syn F5O11.9, F5O11_9, PHOTOLYASE 1, PHR1, TYPE II CPD PHOTOLYASE, UV RESISTANCE 2, UVR2  gene PHR1  function encodes an amino acid sequence with significant homology to the recently characterized type II photolyases. The uvr2-1 mutant is unable to remove CPDs in vivo, and plant extracts lack detectable photolyase activity , is sensitive to UV-B and is an allele  go_component cellular_component|GO:0005575||ND  go_process photoreactive repair|GO:0000719|9061951|IMP  go_process photoreactive repair|GO:0000719|9750104|IMP  go_process UV protection|GO:0009650|8990208|IMP  go_function DNA photolyase activity|GO:0003913|8990208|IDA  go_function DNA photolyase activity|GO:0003913|9061951|IDA  product PHR1 (PHOTOLYASE 1); DNA photolyase  note PHOTOLYASE 1 (PHR1); FUNCTIONS IN: DNA photolyase activity; INVOLVED IN: photoreactive repair, UV protection; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), DNA photolyase, class 2 (InterPro:IPR008148); Has 1496 Blast hits to 1492 proteins in 343 species: Archae - 16; Bacteria - 430; Metazoa - 113; Fungi - 37; Plants - 77; Viruses - 36; Other Eukaryotes - 787 (source: NCBI BLink).  protein_id AT1G12370.1p  transcript_id AT1G12370.1  protein_id AT1G12370.1p  transcript_id AT1G12370.1  
At1g12370	chr1:004208534	0.0	C/4208534-4208842,4207971-4208317,4207641-4207881,4207368-4207525,4207243-4207279,4207112-4207170,4206944-4207025,4206798-4206869,4206500-4206685	AT1G12370.2  CDS  gene_syn F5O11.9, F5O11_9, PHOTOLYASE 1, PHR1, TYPE II CPD PHOTOLYASE, UV RESISTANCE 2, UVR2  gene PHR1  function encodes an amino acid sequence with significant homology to the recently characterized type II photolyases. The uvr2-1 mutant is unable to remove CPDs in vivo, and plant extracts lack detectable photolyase activity , is sensitive to UV-B and is an allele  go_component cellular_component|GO:0005575||ND  go_process photoreactive repair|GO:0000719|9061951|IMP  go_process photoreactive repair|GO:0000719|9750104|IMP  go_process UV protection|GO:0009650|8990208|IMP  go_function DNA photolyase activity|GO:0003913|8990208|IDA  go_function DNA photolyase activity|GO:0003913|9061951|IDA  product PHR1 (PHOTOLYASE 1); DNA photolyase  note PHOTOLYASE 1 (PHR1); FUNCTIONS IN: DNA photolyase activity; INVOLVED IN: photoreactive repair, UV protection; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), DNA photolyase, class 2 (InterPro:IPR008148); Has 2040 Blast hits to 2036 proteins in 467 species: Archae - 24; Bacteria - 661; Metazoa - 119; Fungi - 42; Plants - 91; Viruses - 36; Other Eukaryotes - 1067 (source: NCBI BLink).  protein_id AT1G12370.2p  transcript_id AT1G12370.2  protein_id AT1G12370.2p  transcript_id AT1G12370.2  
At1g12380	chr1:004214499	0.0	C/4214499-4216880	AT1G12380.1  CDS  gene_syn F5O11.10, F5O11_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62870.1); Has 97 Blast hits to 97 proteins in 28 species: Archae - 0; Bacteria - 4; Metazoa - 25; Fungi - 8; Plants - 48; Viruses - 6; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G12380.1p  transcript_id AT1G12380.1  protein_id AT1G12380.1p  transcript_id AT1G12380.1  
At1g12390	chr1:004220347	0.0	W/4220347-4220418,4220968-4221149,4221229-4221351,4221445-4221481	AT1G12390.1  CDS  gene_syn F5O11.11, F5O11_11  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_component membrane|GO:0016020||ISS  go_function molecular_function|GO:0003674||ND  product cornichon family protein  note cornichon family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular signaling cascade; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Cornichon (InterPro:IPR003377); BEST Arabidopsis thaliana protein match is: cornichon family protein (TAIR:AT1G62880.1); Has 466 Blast hits to 466 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 278; Fungi - 110; Plants - 42; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT1G12390.1p  transcript_id AT1G12390.1  protein_id AT1G12390.1p  transcript_id AT1G12390.1  
At1g12400	chr1:004222296	0.0	W/4222296-4222330,4222423-4222603	AT1G12400.1  CDS  gene_syn F5O11.12, F5O11_12  go_component endomembrane system|GO:0012505||IEA  go_process nucleotide-excision repair|GO:0006289||IEA  go_function DNA binding|GO:0003677||IEA  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleotide-excision repair; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide excision repair, TFIIH, subunit TTDA (InterPro:IPR009400); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT1G62886.1); Has 125 Blast hits to 125 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 88; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G12400.1p  transcript_id AT1G12400.1  protein_id AT1G12400.1p  transcript_id AT1G12400.1  
At1g12410	chr1:004223099	0.0	W/4223099-4223148,4223240-4223283,4223397-4223469,4223801-4223915,4224000-4224137,4224231-4224347,4224455-4224523,4224610-4224705,4224817-4224954	AT1G12410.1  CDS  gene_syn CLP PROTEASE PROTEOLYTIC SUBUNIT 2, CLP2, CLPR2, F5O11.13, F5O11_13, NCLPP2, NUCLEAR-ENCODED CLP PROTEASE P2  gene CLP2  function Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_component chloroplast thylakoid|GO:0009534|11278690|IDA  go_component chloroplast stroma|GO:0009570|11278690|IDA  go_component chloroplastic endopeptidase Clp complex|GO:0009840|11278690|IDA  go_component plastoglobule|GO:0010287|16461379|IDA  go_process chloroplast organization|GO:0009658|16766689|IMP  product CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2); serine-type endopeptidase  note CLP PROTEASE PROTEOLYTIC SUBUNIT 2 (CLP2); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: chloroplast organization; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATCG00670.1); Has 8816 Blast hits to 8800 proteins in 1686 species: Archae - 2; Bacteria - 4508; Metazoa - 115; Fungi - 50; Plants - 695; Viruses - 57; Other Eukaryotes - 3389 (source: NCBI BLink).  protein_id AT1G12410.1p  transcript_id AT1G12410.1  protein_id AT1G12410.1p  transcript_id AT1G12410.1  
At1g12411	chr1:004225321	0.0	C/4225321-4225482	AT1G12411.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G12411.1p  transcript_id AT1G12411.1  protein_id AT1G12411.1p  transcript_id AT1G12411.1  
At1g12420	chr1:004228856	0.0	C/4228856-4228917,4228327-4228372,4228130-4228244,4227979-4228046,4227323-4227895,4227116-4227220,4226673-4227029	AT1G12420.1  CDS  gene_syn ACR8, ACT DOMAIN REPEAT 8, F5O11.14, F5O11_14  gene ACR8  go_component cellular_component|GO:0005575||ND  go_process response to abscisic acid stimulus|GO:0009737|12481063|IEP  go_function amino acid binding|GO:0016597|12481063|ISS  product ACR8; amino acid binding  note ACR8; FUNCTIONS IN: amino acid binding; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: ACR7; amino acid binding (TAIR:AT4G22780.1); Has 1348 Blast hits to 957 proteins in 236 species: Archae - 0; Bacteria - 683; Metazoa - 0; Fungi - 0; Plants - 257; Viruses - 0; Other Eukaryotes - 408 (source: NCBI BLink).  protein_id AT1G12420.1p  transcript_id AT1G12420.1  protein_id AT1G12420.1p  transcript_id AT1G12420.1  
At1g12423	chr1:004231027	0.0	C/4231027-4231146	AT1G12423.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G12423.1p  transcript_id AT1G12423.1  protein_id AT1G12423.1p  transcript_id AT1G12423.1  
At1g12430	chr1:004238354	0.0	C/4238354-4238552,4238097-4238197,4237890-4238012,4237386-4237793,4237153-4237306,4236864-4237013,4236661-4236749,4236345-4236548,4236111-4236254,4235889-4236023,4235675-4235806,4235433-4235571,4235250-4235342,4235016-4235141,4234798-4234923,4234560-4234703,4234364-4234492,4234122-4234285	AT1G12430.1  CDS  gene_syn ARK3, ARMADILLO REPEAT KINESIN 3, PAK, phosphatidic acid kinase  gene ARK3  function Encodes the kinesin-like protein PAK has an Armadillo motif tail and is involved in guard cell development in Arabidopsis (from Genbank record AF159052).However, no defect in stomatal complexes has been observed in loss of function mutations.  go_component microtubule associated complex|GO:0005875||IEA  go_component chloroplast|GO:0009507||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function binding|GO:0005488||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product ARK3 (ARMADILLO REPEAT KINESIN 3); ATP binding / binding / microtubule motor  note ARMADILLO REPEAT KINESIN 3 (ARK3); FUNCTIONS IN: microtubule motor activity, binding, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein / kinesin motor family protein (TAIR:AT1G01950.1); Has 20698 Blast hits to 16407 proteins in 694 species: Archae - 110; Bacteria - 872; Metazoa - 10555; Fungi - 1852; Plants - 1557; Viruses - 18; Other Eukaryotes - 5734 (source: NCBI BLink).  protein_id AT1G12430.1p  transcript_id AT1G12430.1  protein_id AT1G12430.1p  transcript_id AT1G12430.1  
At1g12440	chr1:004241816	0.0	C/4241816-4242322	AT1G12440.1  CDS  gene_syn F5O11.17, F5O11_17  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product zinc finger (AN1-like) family protein  note zinc finger (AN1-like) family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: zinc finger (AN1-like) family protein (TAIR:AT4G12040.2); Has 773 Blast hits to 766 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 388; Fungi - 2; Plants - 269; Viruses - 6; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT1G12440.1p  transcript_id AT1G12440.1  protein_id AT1G12440.1p  transcript_id AT1G12440.1  
At1g12440	chr1:004241816	0.0	C/4241816-4242322	AT1G12440.2  CDS  gene_syn F5O11.17, F5O11_17  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product zinc finger (AN1-like) family protein  note zinc finger (AN1-like) family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: zinc finger (AN1-like) family protein (TAIR:AT4G12040.2); Has 773 Blast hits to 766 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 388; Fungi - 2; Plants - 269; Viruses - 6; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT1G12440.2p  transcript_id AT1G12440.2  protein_id AT1G12440.2p  transcript_id AT1G12440.2  
At1g12450	chr1:004244496	0.0	W/4244496-4244756,4244954-4245190,4245293-4245510,4245613-4245808	AT1G12450.1  CDS  gene_syn F5O11.19, F5O11_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22850.1); Has 1233 Blast hits to 1230 proteins in 347 species: Archae - 2; Bacteria - 557; Metazoa - 104; Fungi - 72; Plants - 132; Viruses - 0; Other Eukaryotes - 366 (source: NCBI BLink).  protein_id AT1G12450.1p  transcript_id AT1G12450.1  protein_id AT1G12450.1p  transcript_id AT1G12450.1  
At1g12451	chr1:004246109	0.0	C/4246109-4246291	AT1G12451.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G12451.1p  transcript_id AT1G12451.1  protein_id AT1G12451.1p  transcript_id AT1G12451.1  
At1g12460	chr1:004247703	0.0	W/4247703-4248856,4248950-4250444	AT1G12460.1  CDS  gene_syn F5O11.21, F5O11_21  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT1G62950.1); Has 113666 Blast hits to 77708 proteins in 2862 species: Archae - 57; Bacteria - 7111; Metazoa - 44169; Fungi - 4943; Plants - 42933; Viruses - 182; Other Eukaryotes - 14271 (source: NCBI BLink).  protein_id AT1G12460.1p  transcript_id AT1G12460.1  protein_id AT1G12460.1p  transcript_id AT1G12460.1  
At1g12470	chr1:004251359	0.0	W/4251359-4251521,4251640-4251852,4251947-4252086,4252177-4252272,4252620-4252761,4252839-4252884,4252997-4253141,4253257-4253400,4253507-4253626,4253770-4253826,4253907-4253966,4254114-4254221,4254380-4254522,4254718-4254796,4254905-4254967,4255060-4255190,4255276-4255381,4255566-4255754,4255926-4256153,4256253-4256408,4256531-4256692,4256826-4256942,4257025-4257201	AT1G12470.1  CDS  gene_syn F5O11.22, F5O11_22  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product Pep3/Vps18/deep orange family protein  note Pep3/Vps18/deep orange family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pep3/Vps18/deep orange (InterPro:IPR007810), Zinc finger, RING-type (InterPro:IPR001841); Has 373 Blast hits to 361 proteins in 148 species: Archae - 0; Bacteria - 2; Metazoa - 154; Fungi - 106; Plants - 17; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).  protein_id AT1G12470.1p  transcript_id AT1G12470.1  protein_id AT1G12470.1p  transcript_id AT1G12470.1  
At1g12480	chr1:004258743	0.0	C/4258743-4259249,4257856-4258667,4257427-4257778	AT1G12480.1  CDS  gene_syn CARBON DIOXIDE INSENSITIVE 3, CDI3, F5O11.23, F5O11_23, OZONE-SENSITIVE 1, OZS1, RADICAL-INDUCED CELL DEATH 3, RCD3, SLAC1, SLOW ANION CHANNEL-ASSOCIATED 1  gene OZS1  function Encodes a membrane protein with 10 predicted transmembrane helices. SLAC1 is a multispanning membrane protein expressed predominantly in guard cells that plays a role in regulating cellular ion homeostasis and S-type anion currents. SLAC1 is important for normal stomatal closure in response to a variety of signals including elevated CO2, ozone, ABA, darkness, and humidity. SLAC1:GFP localizes to the plasma membrane.  go_component plasma membrane|GO:0005886|18305482|IDA  go_component integral to membrane|GO:0016021||ISS  go_process anion transport|GO:0006820|18305484|IMP  go_process cellular ion homeostasis|GO:0006873|18305482|IMP  go_process response to humidity|GO:0009270|18305484|IMP  go_process response to abscisic acid stimulus|GO:0009737|18305484|IMP  go_process response to carbon dioxide|GO:0010037|18305484|IMP  go_process stomatal movement|GO:0010118|18305484|IMP  go_process response to ozone|GO:0010193|18305484|IMP  go_process multicellular organismal water homeostasis|GO:0050891|18305484|IMP  go_function transporter activity|GO:0005215||ISS  product OZS1 (OZONE-SENSITIVE 1); transporter  note OZONE-SENSITIVE 1 (OZS1); FUNCTIONS IN: transporter activity; INVOLVED IN: in 8 processes; LOCATED IN: integral to membrane, plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, 4 leaf senescence stage, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: C4-dicarboxylate transporter/malic acid transport protein (InterPro:IPR004695); BEST Arabidopsis thaliana protein match is: SLAH3 (SLAC1 HOMOLOGUE 3); transporter (TAIR:AT5G24030.1); Has 525 Blast hits to 525 proteins in 215 species: Archae - 11; Bacteria - 368; Metazoa - 0; Fungi - 24; Plants - 88; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT1G12480.1p  transcript_id AT1G12480.1  protein_id AT1G12480.1p  transcript_id AT1G12480.1  
At1g12490	chr1:004260783	0.0	W/4260783-4260937,4260966-4261869	AT1G12490.1  CDS  gene_syn F5O11.24, F5O11_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G09650.1); Has 100 Blast hits to 100 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G12490.1p  transcript_id AT1G12490.1  protein_id AT1G12490.1p  transcript_id AT1G12490.1  
At1g12500	chr1:004264286	0.0	C/4264286-4264957,4263542-4263955	AT1G12500.1  CDS  gene_syn F5O11.25, F5O11_25  go_component membrane|GO:0016020||IEA  go_function organic anion transmembrane transporter activity|GO:0008514||ISS  product phosphate translocator-related  note phosphate translocator-related; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: organic anion transmembrane transporter (TAIR:AT3G11320.1); Has 1798 Blast hits to 1797 proteins in 187 species: Archae - 4; Bacteria - 13; Metazoa - 544; Fungi - 288; Plants - 744; Viruses - 0; Other Eukaryotes - 205 (source: NCBI BLink).  protein_id AT1G12500.1p  transcript_id AT1G12500.1  protein_id AT1G12500.1p  transcript_id AT1G12500.1  
At1g12510	chr1:004266988	0.0	C/4266988-4267061	AT1G12510.1  tRNA  gene_syn 60116.TRNA-VAL-1, 61405.TRNA-VAL-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Val (anticodon: AAC)  transcript_id AT1G12510.1  
At1g12520	chr1:004268143	0.0	C/4268143-4268206,4267617-4267840,4267277-4267543	AT1G12520.3  CDS  gene_syn ATCCS, COPPER CHAPERONE FOR SOD1, COPPER/ZINC SUPEROXIDE DISMUTASE COPPER CHAPERONE, F5O11.26, F5O11_26  gene ATCCS  function Copper/zinc superoxide dismutase copper chaperone. Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments. Contains three domains, central, ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|15848163|IDA  go_process cellular copper ion homeostasis|GO:0006878|15848163|TAS  go_function superoxide dismutase activity|GO:0004784|15848163|IDA  go_function superoxide dismutase activity|GO:0004784|15848163|IGI  go_function superoxide dismutase activity|GO:0004784|16126858|IMP  go_function superoxide dismutase copper chaperone activity|GO:0016532||ISS  product ATCCS (COPPER CHAPERONE FOR SOD1); superoxide dismutase/ superoxide dismutase copper chaperone  note COPPER CHAPERONE FOR SOD1 (ATCCS); FUNCTIONS IN: superoxide dismutase copper chaperone activity, superoxide dismutase activity; INVOLVED IN: cellular copper ion homeostasis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Superoxide dismutase, copper/zinc binding (InterPro:IPR001424); BEST Arabidopsis thaliana protein match is: CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2); superoxide dismutase (TAIR:AT2G28190.1); Has 1955 Blast hits to 1955 proteins in 451 species: Archae - 2; Bacteria - 62; Metazoa - 890; Fungi - 250; Plants - 468; Viruses - 112; Other Eukaryotes - 171 (source: NCBI BLink).  protein_id AT1G12520.3p  transcript_id AT1G12520.3  protein_id AT1G12520.3p  transcript_id AT1G12520.3  
At1g12520	chr1:004268375	0.0	C/4268375-4268438,4268143-4268277,4267617-4267840,4267277-4267543	AT1G12520.2  CDS  gene_syn ATCCS, COPPER CHAPERONE FOR SOD1, COPPER/ZINC SUPEROXIDE DISMUTASE COPPER CHAPERONE, F5O11.26, F5O11_26  gene ATCCS  function Copper/zinc superoxide dismutase copper chaperone. Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments. Contains three domains, central, ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|15848163|IDA  go_process cellular copper ion homeostasis|GO:0006878|15848163|TAS  go_function superoxide dismutase activity|GO:0004784|15848163|IDA  go_function superoxide dismutase activity|GO:0004784|15848163|IGI  go_function superoxide dismutase activity|GO:0004784|16126858|IMP  go_function superoxide dismutase copper chaperone activity|GO:0016532||ISS  product ATCCS (COPPER CHAPERONE FOR SOD1); superoxide dismutase/ superoxide dismutase copper chaperone  note COPPER CHAPERONE FOR SOD1 (ATCCS); FUNCTIONS IN: superoxide dismutase copper chaperone activity, superoxide dismutase activity; INVOLVED IN: cellular copper ion homeostasis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Superoxide dismutase, copper/zinc binding (InterPro:IPR001424), Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2); superoxide dismutase (TAIR:AT2G28190.1); Has 2326 Blast hits to 2326 proteins in 561 species: Archae - 2; Bacteria - 257; Metazoa - 929; Fungi - 256; Plants - 588; Viruses - 112; Other Eukaryotes - 182 (source: NCBI BLink).  protein_id AT1G12520.2p  transcript_id AT1G12520.2  protein_id AT1G12520.2p  transcript_id AT1G12520.2  
At1g12520	chr1:004268664	0.0	C/4268664-4268900,4268529-4268555,4268375-4268447,4268143-4268277,4267617-4267840,4267277-4267543	AT1G12520.1  CDS  gene_syn ATCCS, COPPER CHAPERONE FOR SOD1, COPPER/ZINC SUPEROXIDE DISMUTASE COPPER CHAPERONE, F5O11.26, F5O11_26  gene ATCCS  function Copper/zinc superoxide dismutase copper chaperone. Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments. Contains three domains, central, ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|15848163|IDA  go_process cellular copper ion homeostasis|GO:0006878|15848163|TAS  go_function superoxide dismutase activity|GO:0004784|15848163|IDA  go_function superoxide dismutase activity|GO:0004784|15848163|IGI  go_function superoxide dismutase activity|GO:0004784|16126858|IMP  go_function superoxide dismutase copper chaperone activity|GO:0016532||ISS  product ATCCS (COPPER CHAPERONE FOR SOD1); superoxide dismutase/ superoxide dismutase copper chaperone  note COPPER CHAPERONE FOR SOD1 (ATCCS); FUNCTIONS IN: superoxide dismutase copper chaperone activity, superoxide dismutase activity; INVOLVED IN: cellular copper ion homeostasis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Superoxide dismutase, copper/zinc binding (InterPro:IPR001424), Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2); superoxide dismutase (TAIR:AT2G28190.1); Has 2532 Blast hits to 2530 proteins in 629 species: Archae - 2; Bacteria - 385; Metazoa - 972; Fungi - 256; Plants - 616; Viruses - 112; Other Eukaryotes - 189 (source: NCBI BLink).  protein_id AT1G12520.1p  transcript_id AT1G12520.1  protein_id AT1G12520.1p  transcript_id AT1G12520.1  
At1g12530	chr1:004270661	0.0	C/4270661-4270771,4269573-4269688,4269122-4269476	AT1G12530.1  CDS  gene_syn F5O11.27, F5O11_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56420.1); Has 29 Blast hits to 28 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G12530.1p  transcript_id AT1G12530.1  protein_id AT1G12530.1p  transcript_id AT1G12530.1  
At1g12540	chr1:004273137	0.0	W/4273137-4273280,4273410-4273778,4273897-4273980	AT1G12540.1  CDS  gene_syn F5O11.28, F5O11_28  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (bHLH125) (TAIR:AT1G62975.1); Has 216 Blast hits to 215 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 211; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G12540.1p  transcript_id AT1G12540.1  protein_id AT1G12540.1p  transcript_id AT1G12540.1  
At1g12550	chr1:004274649	0.0	W/4274649-4275095,4275307-4275831	AT1G12550.1  CDS  gene_syn F5O11.29, F5O11_29  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_function cofactor binding|GO:0048037||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product oxidoreductase family protein  note oxidoreductase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: oxidoreductase family protein (TAIR:AT2G45630.2); Has 19677 Blast hits to 19673 proteins in 1516 species: Archae - 283; Bacteria - 9440; Metazoa - 658; Fungi - 751; Plants - 326; Viruses - 5; Other Eukaryotes - 8214 (source: NCBI BLink).  protein_id AT1G12550.1p  transcript_id AT1G12550.1  protein_id AT1G12550.1p  transcript_id AT1G12550.1  
At1g12560	chr1:004276557	0.0	W/4276557-4276719,4276984-4277296,4277381-4277693	AT1G12560.1  CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN A7, ATEXP7, ATEXPA7, ATHEXP ALPHA 1.26, EXP7, EXPA7, EXPANSIN A7, F5O11.30, F5O11_30  gene ATEXPA7  function Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Containing a conserved root hair-specific cis-element RHE. Expressed specifically in root hair cell.  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828||ISS  go_process plant-type cell wall modification during multidimensional cell growth|GO:0009831||ISS  product ATEXPA7 (ARABIDOPSIS THALIANA EXPANSIN A7)  note ARABIDOPSIS THALIANA EXPANSIN A7 (ATEXPA7); INVOLVED IN: plant-type cell wall modification during multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: sperm cell, root hair, root; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: ATEXPA18 (ARABIDOPSIS THALIANA EXPANSIN A18) (TAIR:AT1G62980.1); Has 1455 Blast hits to 1454 proteins in 133 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 43; Plants - 1379; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G12560.1p  transcript_id AT1G12560.1  protein_id AT1G12560.1p  transcript_id AT1G12560.1  
At1g12570	chr1:004280672	0.0	C/4280672-4280753,4280255-4280594,4279557-4279858,4278312-4279260,4278192-4278237	AT1G12570.1  CDS  gene_syn F5O11.31, F5O11_31  go_component endomembrane system|GO:0012505||IEA  go_process cellular alcohol metabolic process|GO:0006066||IEA  go_function oxidoreductase activity, acting on CH-OH group of donors|GO:0016614||IEA  go_function FAD binding|GO:0050660||IEA  go_function aldehyde-lyase activity|GO:0016832||ISS  product glucose-methanol-choline (GMC) oxidoreductase family protein  note glucose-methanol-choline (GMC) oxidoreductase family protein; FUNCTIONS IN: aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding; INVOLVED IN: cellular alcohol metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Glucose-methanol-choline oxidoreductase (InterPro:IPR012132), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867); BEST Arabidopsis thaliana protein match is: glucose-methanol-choline (GMC) oxidoreductase family protein (TAIR:AT5G51950.1); Has 8149 Blast hits to 8036 proteins in 676 species: Archae - 2; Bacteria - 2324; Metazoa - 714; Fungi - 1044; Plants - 126; Viruses - 12; Other Eukaryotes - 3927 (source: NCBI BLink).  protein_id AT1G12570.1p  transcript_id AT1G12570.1  protein_id AT1G12570.1p  transcript_id AT1G12570.1  
At1g12580	chr1:004283635	0.0	W/4283635-4284229,4284318-4284614,4284781-4285167,4285386-4285675	AT1G12580.1  CDS  gene_syn F5O11.32, F5O11_32, PEPKR1, Phosphoenolpyruvate carboxylase-related kinase 1  gene PEPKR1  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product PEPKR1 (Phosphoenolpyruvate carboxylase-related kinase 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note Phosphoenolpyruvate carboxylase-related kinase 1 (PEPKR1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CPK34; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G19360.1); Has 89524 Blast hits to 88020 proteins in 2014 species: Archae - 67; Bacteria - 8266; Metazoa - 37934; Fungi - 8549; Plants - 16419; Viruses - 479; Other Eukaryotes - 17810 (source: NCBI BLink).  protein_id AT1G12580.1p  transcript_id AT1G12580.1  protein_id AT1G12580.1p  transcript_id AT1G12580.1  
At1g12590	chr1:004285887	0.0	C/4285887-4285958	AT1G12590.1  tRNA  gene_syn 60116.TRNA-GLY-1, 61405.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: TCC)  transcript_id AT1G12590.1  
At1g12600	chr1:004288728	0.0	C/4288728-4288859,4288252-4288280,4287972-4288173,4287323-4287565,4287137-4287238,4286808-4286915,4286414-4286647	AT1G12600.1  CDS  gene_syn F5O11.33, F5O11_33  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: UAA transporter (InterPro:IPR013657); BEST Arabidopsis thaliana protein match is: UDP-galactose transporter-related (TAIR:AT4G23010.1); Has 943 Blast hits to 943 proteins in 196 species: Archae - 2; Bacteria - 55; Metazoa - 506; Fungi - 148; Plants - 112; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).  protein_id AT1G12600.1p  transcript_id AT1G12600.1  protein_id AT1G12600.1p  transcript_id AT1G12600.1  
At1g12610	chr1:004290205	0.0	C/4290205-4290834	AT1G12610.1  CDS  gene_syn DDF1, DWARF AND DELAYED FLOWERING 1, T12C24.14, T12C24_14  gene DDF1  function Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. Overexpression of this gene results in delayed flowering and dwarfism, reduction of gibberellic acid biosynthesis, and increased tolerance to high levels of salt. This gene is expressed in all tissues examined, but most abundantly expressed in upper stems. Overexpression of this gene is also correlated with increased expression of GA biosynthetic genes and RD29A (a cold and drought responsive gene). Under salt stress it induces the expression of GAOX7, which encodes ad C20-GA inhibitor.  go_process response to salt stress|GO:0009651|14871311|IEP  go_process response to salt stress|GO:0009651|18643985|IGI  go_process gibberellin biosynthetic process|GO:0009686|14871311|IMP  go_process cell growth|GO:0016049|14871311|IMP  go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|14871311|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function sequence-specific DNA binding|GO:0043565|18643985|IPI  product DDF1 (DWARF AND DELAYED FLOWERING 1); DNA binding / sequence-specific DNA binding / transcription factor  note DWARF AND DELAYED FLOWERING 1 (DDF1); FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding, DNA binding; INVOLVED IN: response to salt stress, gibberellin biosynthetic process, cell growth, regulation of timing of transition from vegetative to reproductive phase; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ddf2 (DWARF AND DELAYED FLOWERING 2); DNA binding / transcription factor (TAIR:AT1G63030.2); Has 3441 Blast hits to 3437 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3437; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G12610.1p  transcript_id AT1G12610.1  protein_id AT1G12610.1p  transcript_id AT1G12610.1  
At1g12620	chr1:004294883	0.0	C/4294883-4296748	AT1G12620.1  CDS  gene_syn T12C24.15, T12C24_15  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: shoot apex, leaf whorl, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G12300.1); Has 27983 Blast hits to 6205 proteins in 194 species: Archae - 4; Bacteria - 17; Metazoa - 1072; Fungi - 778; Plants - 24632; Viruses - 0; Other Eukaryotes - 1480 (source: NCBI BLink).  protein_id AT1G12620.1p  transcript_id AT1G12620.1  protein_id AT1G12620.1p  transcript_id AT1G12620.1  
At1g12630	chr1:004298897	0.0	W/4298897-4299475	AT1G12630.1  CDS  gene_syn T12C24.16, T12C24_16  function encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function transcription activator activity|GO:0016563||ISS  product DNA binding / transcription activator/ transcription factor  note DNA binding / transcription activator/ transcription factor; FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing protein (TAIR:AT5G52020.1); Has 3631 Blast hits to 3618 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 3623; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G12630.1p  transcript_id AT1G12630.1  protein_id AT1G12630.1p  transcript_id AT1G12630.1  
At1g12640	chr1:004305371	0.0	C/4305371-4305666,4305210-4305265,4304870-4305090,4304360-4304768,4304188-4304273,4304014-4304077,4303812-4303930,4303586-4303723	AT1G12640.1  CDS  gene_syn T12C24.17, T12C24_17  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function acyltransferase activity|GO:0008415||ISS  product membrane bound O-acyl transferase (MBOAT) family protein  note membrane bound O-acyl transferase (MBOAT) family protein; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Membrane bound O-acyl transferase, MBOAT (InterPro:IPR004299); BEST Arabidopsis thaliana protein match is: membrane bound O-acyl transferase (MBOAT) family protein (TAIR:AT1G63050.1); Has 864 Blast hits to 862 proteins in 168 species: Archae - 0; Bacteria - 109; Metazoa - 536; Fungi - 94; Plants - 27; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT1G12640.1p  transcript_id AT1G12640.1  protein_id AT1G12640.1p  transcript_id AT1G12640.1  
At1g12650	chr1:004306183	0.0	W/4306183-4306287,4306369-4306496,4306597-4306663,4306764-4306816,4306908-4306962,4307047-4307121,4307214-4307334,4307446-4307492,4307578-4307673	AT1G12650.1  CDS  gene_syn T12C24.18, T12C24_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292); Has 600 Blast hits to 528 proteins in 139 species: Archae - 0; Bacteria - 24; Metazoa - 132; Fungi - 115; Plants - 36; Viruses - 0; Other Eukaryotes - 293 (source: NCBI BLink).  protein_id AT1G12650.1p  transcript_id AT1G12650.1  protein_id AT1G12650.1p  transcript_id AT1G12650.1  
At1g12650	chr1:004306183	0.0	W/4306183-4306287,4306369-4306496,4306597-4306663,4306764-4306816,4306908-4306962,4307047-4307121,4307214-4307334,4307446-4307492,4307578-4307673	AT1G12650.2  CDS  gene_syn T12C24.18, T12C24_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292); Has 600 Blast hits to 528 proteins in 139 species: Archae - 0; Bacteria - 24; Metazoa - 132; Fungi - 115; Plants - 36; Viruses - 0; Other Eukaryotes - 293 (source: NCBI BLink).  protein_id AT1G12650.2p  transcript_id AT1G12650.2  protein_id AT1G12650.2p  transcript_id AT1G12650.2  
At1g12650	chr1:004306183	0.0	W/4306183-4306287,4306369-4306496,4306597-4306663,4306764-4306816,4306908-4306962,4307047-4307121,4307214-4307334,4307446-4307492,4307578-4307673	AT1G12650.3  CDS  gene_syn T12C24.18, T12C24_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292); Has 600 Blast hits to 528 proteins in 139 species: Archae - 0; Bacteria - 24; Metazoa - 132; Fungi - 115; Plants - 36; Viruses - 0; Other Eukaryotes - 293 (source: NCBI BLink).  protein_id AT1G12650.3p  transcript_id AT1G12650.3  protein_id AT1G12650.3p  transcript_id AT1G12650.3  
At1g12650	chr1:004306183	0.0	W/4306183-4306287,4306369-4306496,4306597-4306663,4306764-4306816,4306908-4306962,4307047-4307121,4307214-4307334,4307446-4307492,4307578-4307673	AT1G12650.4  CDS  gene_syn T12C24.18, T12C24_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292); Has 600 Blast hits to 528 proteins in 139 species: Archae - 0; Bacteria - 24; Metazoa - 132; Fungi - 115; Plants - 36; Viruses - 0; Other Eukaryotes - 293 (source: NCBI BLink).  protein_id AT1G12650.4p  transcript_id AT1G12650.4  protein_id AT1G12650.4p  transcript_id AT1G12650.4  
At1g12660	chr1:004308943	0.0	W/4308943-4309243,4309494-4309558	AT1G12660.1  CDS  gene_syn T12C24.19, T12C24_19  function Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952|18674922|ISS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12663.1); Has 13 Blast hits to 12 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G12660.1p  transcript_id AT1G12660.1  protein_id AT1G12660.1p  transcript_id AT1G12660.1  
At1g12663	chr1:004310969	0.0	W/4310969-4311254,4311396-4311457	AT1G12663.1  CDS  function Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952|18674922|ISS  product unknown protein  note INVOLVED IN: defense response; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12660.1); Has 18 Blast hits to 17 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G12663.1p  transcript_id AT1G12663.1  protein_id AT1G12663.1p  transcript_id AT1G12663.1  
At1g12665	chr1:004312398	0.0	W/4312398-4312667	AT1G12665.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12663.1); Has 1510 Blast hits to 363 proteins in 82 species: Archae - 6; Bacteria - 276; Metazoa - 46; Fungi - 201; Plants - 298; Viruses - 144; Other Eukaryotes - 539 (source: NCBI BLink).  protein_id AT1G12665.1p  transcript_id AT1G12665.1  protein_id AT1G12665.1p  transcript_id AT1G12665.1  
At1g12667	chr1:004313858	0.0	W/4313858-4314204	AT1G12667.1  pseudogenic_transcript  pseudo  function Encodes a Plant thionin family protein  
At1g12669	chr1:004315466	0.0	W/4315466-4315987	AT1G12669.1  pseudogenic_transcript  pseudo  function Encodes a Plant thionin family protein [pseudogene]  
At1g12670	chr1:004316701	0.0	W/4316701-4317005	AT1G12670.1  pseudogenic_transcript  pseudo  gene_syn T12C24.20, T12C24_20  function Encodes a Plant thionin family protein [pseudogene]  
At1g12672	chr1:004318457	0.0	W/4318457-4318498,4318596-4318692,4318810-4318871	AT1G12672.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12663.1).  protein_id AT1G12672.1p  transcript_id AT1G12672.1  protein_id AT1G12672.1p  transcript_id AT1G12672.1  
At1g12680	chr1:004321516	0.0	C/4321516-4322269,4320623-4320919,4320123-4320484	AT1G12680.1  CDS  gene_syn PEPKR2, Phosphoenolpyruvate carboxylase-related kinase 2, T12C24.32, T12C24_32  gene PEPKR2  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product PEPKR2 (Phosphoenolpyruvate carboxylase-related kinase 2); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note Phosphoenolpyruvate carboxylase-related kinase 2 (PEPKR2); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CPK29; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT1G76040.2); Has 92906 Blast hits to 91377 proteins in 2552 species: Archae - 77; Bacteria - 8548; Metazoa - 39331; Fungi - 8639; Plants - 17815; Viruses - 501; Other Eukaryotes - 17995 (source: NCBI BLink).  protein_id AT1G12680.1p  transcript_id AT1G12680.1  protein_id AT1G12680.1p  transcript_id AT1G12680.1  
At1g12700	chr1:004324457	0.0	C/4324457-4326197,4324348-4324386,4324165-4324247,4323749-4324036,4322913-4323248	AT1G12700.1  CDS  gene_syn T12C24.31, T12C24_31  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_process biological_process|GO:0008150||ND  product helicase domain-containing protein / pentatricopeptide (PPR) repeat-containing protein  note helicase domain-containing protein / pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), DNA/RNA helicase, C-terminal (InterPro:IPR001650); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G12300.1); Has 39649 Blast hits to 17013 proteins in 1428 species: Archae - 82; Bacteria - 6178; Metazoa - 2406; Fungi - 1657; Plants - 25987; Viruses - 4; Other Eukaryotes - 3335 (source: NCBI BLink).  protein_id AT1G12700.1p  transcript_id AT1G12700.1  protein_id AT1G12700.1p  transcript_id AT1G12700.1  
At1g12710	chr1:004327992	0.0	C/4327992-4328324,4327741-4327859,4326980-4327403	AT1G12710.1  CDS  gene_syn AtPP2-A12, Phloem protein 2-A12, T12C24.23, T12C24_23  gene AtPP2-A12  function This gene is predicted to encode a protein with a PP2 domain. This domain in present in lectins found in squash and cucumber, suggesting that this protein could potentially have carbohydrate binding capabilities.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function carbohydrate binding|GO:0030246|12529520|ISS  product AtPP2-A12 (Phloem protein 2-A12); carbohydrate binding  note Phloem protein 2-A12 (AtPP2-A12); FUNCTIONS IN: carbohydrate binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: AtPP2-A11 (Phloem protein 2-A11); carbohydrate binding (TAIR:AT1G63090.1); Has 255 Blast hits to 253 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 253; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G12710.1p  transcript_id AT1G12710.1  protein_id AT1G12710.1p  transcript_id AT1G12710.1  
At1g12720	chr1:004331062	0.0	W/4331062-4333220	AT1G12720.1  mRNA_TE_gene  pseudo  gene_syn T12C24.24, T12C24_24  note Transposable element gene, Mutator-like transposase family, has a 1.2e-40 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At1g12725	chr1:004333383	0.0	C/4333383-4334033	AT1G12725.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28570.1); similar to GRF zinc finger containing protein [Brassica oleracea] (GB:ABD64950.1)  
At1g12730	chr1:004334675	0.0	W/4334675-4334846,4334954-4335001,4335097-4335157,4335261-4335293,4335438-4335562,4335759-4335893,4336012-4336088,4336180-4336436,4336578-4336634,4336722-4336893,4336999-4337056,4337149-4337234,4337317-4337373,4337523-4337609	AT1G12730.1  CDS  gene_syn T12C24.26, T12C24_26  go_component endoplasmic reticulum membrane|GO:0005789||IEA  go_component integral to membrane|GO:0016021||IEA  go_process GPI anchor biosynthetic process|GO:0006506||IEA  go_function molecular_function|GO:0003674||ND  product cell division cycle protein-related  note cell division cycle protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: integral to membrane, endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GPI transamidase subunit PIG-U (InterPro:IPR009600); BEST Arabidopsis thaliana protein match is: cell division cycle protein-related (TAIR:AT1G63110.1); Has 250 Blast hits to 246 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 79; Plants - 31; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G12730.1p  transcript_id AT1G12730.1  protein_id AT1G12730.1p  transcript_id AT1G12730.1  
At1g12730	chr1:004335109	0.0	W/4335109-4335157,4335261-4335293,4335458-4335562,4335759-4335893,4336012-4336088,4336180-4336436,4336578-4336634,4336722-4336893,4336999-4337056,4337149-4337234,4337317-4337373,4337523-4337609	AT1G12730.2  CDS  gene_syn T12C24.26, T12C24_26  go_component endoplasmic reticulum membrane|GO:0005789||IEA  go_component integral to membrane|GO:0016021||IEA  go_process GPI anchor biosynthetic process|GO:0006506||IEA  go_function molecular_function|GO:0003674||ND  product cell division cycle protein-related  note cell division cycle protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: integral to membrane, endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GPI transamidase subunit PIG-U (InterPro:IPR009600); BEST Arabidopsis thaliana protein match is: cell division cycle protein-related (TAIR:AT1G63110.2); Has 233 Blast hits to 231 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 79; Plants - 31; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G12730.2p  transcript_id AT1G12730.2  protein_id AT1G12730.2p  transcript_id AT1G12730.2  
At1g12740	chr1:004342462	0.0	W/4342462-4342658,4342741-4343062,4343149-4343298,4343369-4343620,4343708-4343797,4343891-4343969,4344065-4344171,4344257-4344384,4344476-4344569	AT1G12740.1  CDS  gene_syn CYP87A2, CYTOCHROME P450, FAMILY 87, SUBFAMILY A, POLYPEPTIDE 2, T12C24.27, T12C24_27  gene CYP87A2  function encodes a protein with cytochrome P450 domain  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP87A2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP87A2; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP708A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G55940.1); Has 22172 Blast hits to 22115 proteins in 1214 species: Archae - 28; Bacteria - 3179; Metazoa - 9689; Fungi - 3432; Plants - 4649; Viruses - 3; Other Eukaryotes - 1192 (source: NCBI BLink).  protein_id AT1G12740.1p  transcript_id AT1G12740.1  protein_id AT1G12740.1p  transcript_id AT1G12740.1  
At1g12750	chr1:004346453	0.0	C/4346453-4346688,4345809-4345972,4345550-4345713,4345100-4345459	AT1G12750.1  CDS  gene_syn ARABIDOPSIS RHOMBOID-LIKE PROTEIN 6, ATRBL6, T12C24.28, T12C24_28  gene ATRBL6  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ATRBL6 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 6)  note ARABIDOPSIS RHOMBOID-LIKE PROTEIN 6 (ATRBL6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: ATRBL2 (Arabidopsis thaliana Rhomboid-like 2); serine-type endopeptidase (TAIR:AT1G63120.1); Has 4150 Blast hits to 4150 proteins in 988 species: Archae - 83; Bacteria - 2091; Metazoa - 485; Fungi - 94; Plants - 192; Viruses - 0; Other Eukaryotes - 1205 (source: NCBI BLink).  protein_id AT1G12750.1p  transcript_id AT1G12750.1  protein_id AT1G12750.1p  transcript_id AT1G12750.1  
At1g12750	chr1:004346453	0.0	C/4346453-4346688,4345809-4345972,4345550-4345713,4345100-4345459	AT1G12750.2  CDS  gene_syn ARABIDOPSIS RHOMBOID-LIKE PROTEIN 6, ATRBL6, T12C24.28, T12C24_28  gene ATRBL6  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ATRBL6 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 6)  note ARABIDOPSIS RHOMBOID-LIKE PROTEIN 6 (ATRBL6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: ATRBL2 (Arabidopsis thaliana Rhomboid-like 2); serine-type endopeptidase (TAIR:AT1G63120.1); Has 4150 Blast hits to 4150 proteins in 988 species: Archae - 83; Bacteria - 2091; Metazoa - 485; Fungi - 94; Plants - 192; Viruses - 0; Other Eukaryotes - 1205 (source: NCBI BLink).  protein_id AT1G12750.2p  transcript_id AT1G12750.2  protein_id AT1G12750.2p  transcript_id AT1G12750.2  
At1g12760	chr1:004348728	0.0	W/4348728-4349359,4349664-4349783,4349859-4349991,4350075-4350242,4350339-4350512	AT1G12760.1  CDS  gene_syn T12C24.29, T12C24_29  go_component chloroplast|GO:0009507||IEA  go_function ubiquitin-protein ligase activity|GO:0004842|15644464|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product protein binding / ubiquitin-protein ligase/ zinc ion binding  note protein binding / ubiquitin-protein ligase/ zinc ion binding; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G63170.1); Has 6688 Blast hits to 6669 proteins in 210 species: Archae - 0; Bacteria - 6; Metazoa - 2304; Fungi - 503; Plants - 2742; Viruses - 19; Other Eukaryotes - 1114 (source: NCBI BLink).  protein_id AT1G12760.1p  transcript_id AT1G12760.1  protein_id AT1G12760.1p  transcript_id AT1G12760.1  
At1g12760	chr1:004348941	0.0	W/4348941-4349359,4349664-4349783,4349859-4349991,4350075-4350242,4350339-4350512	AT1G12760.2  CDS  gene_syn T12C24.29, T12C24_29  go_function ubiquitin-protein ligase activity|GO:0004842|15644464|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product protein binding / ubiquitin-protein ligase/ zinc ion binding  note protein binding / ubiquitin-protein ligase/ zinc ion binding; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G63170.1); Has 6687 Blast hits to 6668 proteins in 210 species: Archae - 0; Bacteria - 6; Metazoa - 2303; Fungi - 503; Plants - 2742; Viruses - 19; Other Eukaryotes - 1114 (source: NCBI BLink).  protein_id AT1G12760.2p  transcript_id AT1G12760.2  protein_id AT1G12760.2p  transcript_id AT1G12760.2  
At1g12770	chr1:004351888	0.0	W/4351888-4353543	AT1G12770.1  CDS  gene_syn EMB1586, embryo defective 1586  gene EMB1586  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product EMB1586 (embryo defective 1586); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding  note embryo defective 1586 (EMB1586); FUNCTIONS IN: helicase activity, ATP binding, nucleic acid binding, ATP-dependent helicase activity; INVOLVED IN: embryonic development ending in seed dormancy; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative (TAIR:AT3G19760.1); Has 25549 Blast hits to 25020 proteins in 1695 species: Archae - 449; Bacteria - 9955; Metazoa - 4809; Fungi - 3113; Plants - 1343; Viruses - 12; Other Eukaryotes - 5868 (source: NCBI BLink).  protein_id AT1G12770.1p  transcript_id AT1G12770.1  protein_id AT1G12770.1p  transcript_id AT1G12770.1  
At1g12775	chr1:004353906	0.0	W/4353906-4355840	AT1G12775.1  CDS  go_component mitochondrion|GO:0005739||IEA  product unknown protein  note LOCATED IN: mitochondrion; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G12300.1); Has 27792 Blast hits to 6269 proteins in 197 species: Archae - 2; Bacteria - 23; Metazoa - 895; Fungi - 767; Plants - 24554; Viruses - 0; Other Eukaryotes - 1551 (source: NCBI BLink).  protein_id AT1G12775.1p  transcript_id AT1G12775.1  protein_id AT1G12775.1p  transcript_id AT1G12775.1  
At1g12780	chr1:004357923	0.0	C/4357923-4358120,4357640-4357689,4357412-4357547,4357199-4357300,4356636-4356945,4356466-4356548,4356292-4356383,4356124-4356208	AT1G12780.1  CDS  gene_syn F13K23.3, F13K23_3, UDP-D-glucose/UDP-D-galactose 4-epimerase 1, UGE1  gene UGE1  function Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate. Responsive to stress.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component cytosol|GO:0005829|16644739|IDA  go_component cytosol|GO:0005829|8615692|TAS  go_process response to stress|GO:0006950|17496119|IMP  go_process galactose biosynthetic process|GO:0046369|8615692|IDA  go_function UDP-glucose 4-epimerase activity|GO:0003978|16644739|IDA  go_function UDP-glucose 4-epimerase activity|GO:0003978|16644739|IGI  go_function UDP-glucose 4-epimerase activity|GO:0003978|17496119|IDA  go_function UDP-glucose 4-epimerase activity|GO:0003978|8615692|IDA  go_function UDP-glucose 4-epimerase activity|GO:0003978|8615692|IGI  go_function protein dimerization activity|GO:0046983|16644739|IPI  product UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1); UDP-glucose 4-epimerase/ protein dimerization  note UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (UGE1); FUNCTIONS IN: UDP-glucose 4-epimerase activity, protein dimerization activity; INVOLVED IN: galactose biosynthetic process, response to stress; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: UGE3 (UDP-D-glucose/UDP-D-galactose 4-epimerase 3); UDP-glucose 4-epimerase/ protein dimerization (TAIR:AT1G63180.1); Has 30220 Blast hits to 30215 proteins in 1715 species: Archae - 481; Bacteria - 13914; Metazoa - 555; Fungi - 352; Plants - 645; Viruses - 32; Other Eukaryotes - 14241 (source: NCBI BLink).  protein_id AT1G12780.1p  transcript_id AT1G12780.1  protein_id AT1G12780.1p  transcript_id AT1G12780.1  
At1g12790	chr1:004361153	0.0	C/4361153-4361222,4360735-4360862,4360558-4360646,4360380-4360475,4360195-4360289,4360067-4360107,4359898-4359981,4359597-4359746	AT1G12790.1  CDS  gene_syn F13K23.4, F13K23_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RuvA domain 2-like (InterPro:IPR010994); Has 10 Blast hits to 10 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G12790.1p  transcript_id AT1G12790.1  protein_id AT1G12790.1p  transcript_id AT1G12790.1  
At1g12800	chr1:004364944	0.0	C/4364944-4365189,4364116-4364851,4363915-4364041,4363704-4363824,4363531-4363620,4363146-4363445,4362884-4363063,4362684-4362770,4362537-4362608,4362357-4362449,4362178-4362285,4361946-4362014,4361778-4361852	AT1G12800.1  CDS  gene_syn F13K23.5, F13K23_5  go_component chloroplast|GO:0009507|18431481|IDA  go_function RNA binding|GO:0003723||IEA  go_function RNA binding|GO:0003723||ISS  product S1 RNA-binding domain-containing protein  note S1 RNA-binding domain-containing protein; FUNCTIONS IN: RNA binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), S1, RNA binding (InterPro:IPR003029); BEST Arabidopsis thaliana protein match is: S1 RNA-binding domain-containing protein (TAIR:AT3G23700.1); Has 11447 Blast hits to 6135 proteins in 1348 species: Archae - 6; Bacteria - 6604; Metazoa - 236; Fungi - 109; Plants - 97; Viruses - 3; Other Eukaryotes - 4392 (source: NCBI BLink).  protein_id AT1G12800.1p  transcript_id AT1G12800.1  protein_id AT1G12800.1p  transcript_id AT1G12800.1  
At1g12805	chr1:004366728	0.0	W/4366728-4366955	AT1G12805.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product nucleotide binding  note nucleotide binding; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G12805.1p  transcript_id AT1G12805.1  protein_id AT1G12805.1p  transcript_id AT1G12805.1  
At1g12810	chr1:004367332	0.0	W/4367332-4367374,4367494-4367791,4368020-4368118,4368472-4368520	AT1G12810.2  CDS  gene_syn F13K23.6, F13K23_6  product proline-rich family protein  note proline-rich family protein; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages.  protein_id AT1G12810.2p  transcript_id AT1G12810.2  protein_id AT1G12810.2p  transcript_id AT1G12810.2  
At1g12810	chr1:004367332	0.0	W/4367332-4367374,4367494-4367791,4368472-4368520	AT1G12810.1  CDS  gene_syn F13K23.6, F13K23_6  product proline-rich family protein  note proline-rich family protein; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 18253 Blast hits to 9092 proteins in 508 species: Archae - 4; Bacteria - 1240; Metazoa - 7585; Fungi - 2636; Plants - 4321; Viruses - 457; Other Eukaryotes - 2010 (source: NCBI BLink).  protein_id AT1G12810.1p  transcript_id AT1G12810.1  protein_id AT1G12810.1p  transcript_id AT1G12810.1  
At1g12820	chr1:004370329	0.0	C/4370329-4370780,4369757-4370252,4368879-4369664	AT1G12820.1  CDS  gene_syn AFB3, AUXIN SIGNALING F-BOX 3, F13K23.7, F13K23_7  gene AFB3  go_component cellular_component|GO:0005575||ND  go_process response to molecule of bacterial origin|GO:0002237|16627744|IEP  go_process pollen maturation|GO:0010152|18628351|IGI  go_process stamen development|GO:0048443|18628351|IGI  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function auxin binding|GO:0010011|15917797|IGI  product AFB3 (AUXIN SIGNALING F-BOX 3); auxin binding / ubiquitin-protein ligase  note AUXIN SIGNALING F-BOX 3 (AFB3); FUNCTIONS IN: auxin binding, ubiquitin-protein ligase activity; INVOLVED IN: stamen development, pollen maturation, response to molecule of bacterial origin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: AFB2 (AUXIN SIGNALING F-BOX 2); auxin binding / ubiquitin-protein ligase (TAIR:AT3G26810.1); Has 1735 Blast hits to 1177 proteins in 116 species: Archae - 0; Bacteria - 2; Metazoa - 751; Fungi - 96; Plants - 802; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT1G12820.1p  transcript_id AT1G12820.1  protein_id AT1G12820.1p  transcript_id AT1G12820.1  
At1g12830	chr1:004374412	0.0	C/4374412-4375053	AT1G12830.1  CDS  gene_syn F13K23.8, F13K23_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 39113 Blast hits to 20367 proteins in 821 species: Archae - 97; Bacteria - 5453; Metazoa - 15540; Fungi - 5514; Plants - 1861; Viruses - 608; Other Eukaryotes - 10040 (source: NCBI BLink).  protein_id AT1G12830.1p  transcript_id AT1G12830.1  protein_id AT1G12830.1p  transcript_id AT1G12830.1  
At1g12840	chr1:004375584	0.0	W/4375584-4375697,4375828-4375896,4375982-4376109,4376206-4376305,4376488-4376555,4376804-4376945,4377045-4377161,4377340-4377465,4377551-4377634,4377723-4377802,4378121-4378220	AT1G12840.1  CDS  gene_syn ARABIDOPSIS THALIANA VACUOLAR ATP SYNTHASE SUBUNIT C, ATVHA-C, DE-ETIOLATED 3, DET3, F13K23.9, F13K23_9, VACUOLAR ATP SYNTHASE SUBUNIT C  gene DET3  function Encodes subunit C of the vacuolar H(+)-ATPase (V-ATPase). Bound and phosphorylated by AtWNK8.  go_component plant-type vacuole|GO:0000325|16618929|IDA  go_component vacuole|GO:0005773|14760709|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component vacuolar proton-transporting V-type ATPase, V1 domain|GO:0000221|10617574|IDA  go_component vacuolar membrane|GO:0005774|16618929|IDA  go_component plasma membrane|GO:0005886|10617574|IDA  go_process lignin biosynthetic process|GO:0009809|16159327|IGI  go_process unidimensional cell growth|GO:0009826|10617574|IMP  go_process carbohydrate biosynthetic process|GO:0016051|16159327|IGI  go_function proton-transporting ATPase activity, rotational mechanism|GO:0046961|10617574|IGI  product DET3 (DE-ETIOLATED 3); proton-transporting ATPase, rotational mechanism  note DE-ETIOLATED 3 (DET3); FUNCTIONS IN: proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: lignin biosynthetic process, carbohydrate biosynthetic process, unidimensional cell growth; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, V1 complex, subunit C (InterPro:IPR004907); Has 421 Blast hits to 402 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 221; Fungi - 90; Plants - 40; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT1G12840.1p  transcript_id AT1G12840.1  protein_id AT1G12840.1p  transcript_id AT1G12840.1  
At1g12845	chr1:004379023	0.0	C/4379023-4379382	AT1G12845.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G12845.1p  transcript_id AT1G12845.1  protein_id AT1G12845.1p  transcript_id AT1G12845.1  
At1g12850	chr1:004381005	0.0	C/4381005-4381577,4380022-4380666	AT1G12850.1  CDS  gene_syn F13K23.10, F13K23_10  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function catalytic activity|GO:0003824||ISS  product phosphoglycerate/bisphosphoglycerate mutase family protein  note phosphoglycerate/bisphosphoglycerate mutase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: N-terminal protein myristoylation, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078), Uncharacterised conserved protein UCP036920, phosphoglycerate mutase, plant X4/Y4 (InterPro:IPR017070); BEST Arabidopsis thaliana protein match is: catalytic (TAIR:AT3G26780.1); Has 1266 Blast hits to 1214 proteins in 304 species: Archae - 4; Bacteria - 504; Metazoa - 376; Fungi - 31; Plants - 127; Viruses - 2; Other Eukaryotes - 222 (source: NCBI BLink).  protein_id AT1G12850.1p  transcript_id AT1G12850.1  protein_id AT1G12850.1p  transcript_id AT1G12850.1  
At1g12860	chr1:004382223	0.0	W/4382223-4383350,4384752-4385642,4385724-4385936,4386019-4386189,4386309-4386392	AT1G12860.1  CDS  gene_syn F13K23.12, F13K23_12, ICE2, INDUCER OF CBF EXPRESSION 2, SCREAM 2, SCRM2  gene SCRM2  function Encodes ICE2 (Inducer of CBF Expression 2), a transcription factor of the bHLH family that participates in the response to deep freezing through the cold acclimation-dependent pathway. Overexpression of ICE2 results in increased tolerance to deep freezing stress after cold acclimation.  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process guard mother cell differentiation|GO:0010444|18641265|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process response to freezing|GO:0050826|19026725|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product SCRM2 (SCREAM 2); DNA binding / transcription factor  note SCREAM 2 (SCRM2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to freezing, guard mother cell differentiation, regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), F-box associated type 1 (InterPro:IPR017451), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G13200.1); Has 2319 Blast hits to 2313 proteins in 165 species: Archae - 0; Bacteria - 2; Metazoa - 46; Fungi - 28; Plants - 2199; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT1G12860.1p  transcript_id AT1G12860.1  protein_id AT1G12860.1p  transcript_id AT1G12860.1  
At1g12870	chr1:004387968	0.0	C/4387968-4389110,4387129-4387236	AT1G12870.1  CDS  gene_syn F13K23.13, F13K23_13  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product S locus F-box-related / SLF-related  note S locus F-box-related / SLF-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: SCRM2 (SCREAM 2); DNA binding / transcription factor (TAIR:AT1G12860.1); Has 1066 Blast hits to 1054 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1062; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G12870.1p  transcript_id AT1G12870.1  protein_id AT1G12870.1p  transcript_id AT1G12870.1  
At1g12880	chr1:004390036	0.0	W/4390036-4390106,4390251-4390374,4390457-4390540,4390632-4390781,4390864-4391046	AT1G12880.1  CDS  gene_syn Arabidopsis thaliana Nudix hydrolase homolog 12, F13K23.14, F13K23_14, atnudt12  gene atnudt12  go_function hydrolase activity|GO:0016787||IEA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product atnudt12 (Arabidopsis thaliana Nudix hydrolase homolog 12); hydrolase  note Arabidopsis thaliana Nudix hydrolase homolog 12 (atnudt12); FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), NUDIX hydrolase, core (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13); bis(5 -adenosyl)-pentaphosphatase/ hydrolase (TAIR:AT3G26690.2); Has 834 Blast hits to 832 proteins in 229 species: Archae - 0; Bacteria - 307; Metazoa - 225; Fungi - 72; Plants - 132; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT1G12880.1p  transcript_id AT1G12880.1  protein_id AT1G12880.1p  transcript_id AT1G12880.1  
At1g12890	chr1:004391734	0.0	W/4391734-4392393	AT1G12890.1  CDS  gene_syn F13K23.25  function encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene-responsive element-binding family protein (TAIR:AT1G28160.1); Has 3367 Blast hits to 3350 proteins in 184 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3361; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G12890.1p  transcript_id AT1G12890.1  protein_id AT1G12890.1p  transcript_id AT1G12890.1  
At1g12900	chr1:004393542	0.0	C/4393542-4393747,4393224-4393468,4392634-4393136	AT1G12900.2  CDS  gene_syn F13K23.15, F13K23_15, GAPA-2, GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2  gene GAPA-2  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process glucose metabolic process|GO:0006006||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity|GO:0004365||IEA  go_function binding|GO:0005488||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_process glycolysis|GO:0006096||ISS  go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943||ISS  product GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2); NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase  note GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2 (GAPA-2); FUNCTIONS IN: NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, binding, glyceraldehyde-3-phosphate dehydrogenase activity, catalytic activity; INVOLVED IN: glycolysis, glucose metabolic process, metabolic process; LOCATED IN: apoplast, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase (InterPro:IPR000173), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase/ protein binding (TAIR:AT3G26650.1); Has 16656 Blast hits to 16655 proteins in 3851 species: Archae - 18; Bacteria - 6584; Metazoa - 1240; Fungi - 1867; Plants - 2492; Viruses - 0; Other Eukaryotes - 4455 (source: NCBI BLink).  protein_id AT1G12900.2p  transcript_id AT1G12900.2  protein_id AT1G12900.2p  transcript_id AT1G12900.2  
At1g12900	chr1:004393546	0.0	C/4393546-4393850,4393224-4393468,4392634-4393136	AT1G12900.3  CDS  gene_syn F13K23.15, F13K23_15, GAPA-2, GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2  gene GAPA-2  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process glucose metabolic process|GO:0006006||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity|GO:0004365||IEA  go_function binding|GO:0005488||IEA  go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_process glycolysis|GO:0006096||ISS  go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943||ISS  product GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2); NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase  note GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2 (GAPA-2); FUNCTIONS IN: NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, binding, catalytic activity, glyceraldehyde-3-phosphate dehydrogenase activity; INVOLVED IN: glycolysis, glucose metabolic process, metabolic process; LOCATED IN: apoplast, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase (InterPro:IPR000173), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase/ protein binding (TAIR:AT3G26650.1); Has 17346 Blast hits to 17340 proteins in 3915 species: Archae - 27; Bacteria - 6608; Metazoa - 1325; Fungi - 1881; Plants - 2527; Viruses - 0; Other Eukaryotes - 4978 (source: NCBI BLink).  protein_id AT1G12900.3p  transcript_id AT1G12900.3  protein_id AT1G12900.3p  transcript_id AT1G12900.3  
At1g12900	chr1:004394242	0.0	C/4394242-4394283,4394044-4394148,4393546-4393850,4393224-4393468,4392634-4393136	AT1G12900.1  CDS  gene_syn F13K23.15, F13K23_15, GAPA-2, GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2  gene GAPA-2  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process glucose metabolic process|GO:0006006||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity|GO:0004365||IEA  go_function binding|GO:0005488||IEA  go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_process glycolysis|GO:0006096||ISS  go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943||ISS  product GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2); NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase  note GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2 (GAPA-2); FUNCTIONS IN: NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, binding, glyceraldehyde-3-phosphate dehydrogenase activity, catalytic activity; INVOLVED IN: glycolysis, glucose metabolic process, metabolic process; LOCATED IN: apoplast, chloroplast stroma, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase (InterPro:IPR000173), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase/ protein binding (TAIR:AT3G26650.1); Has 17333 Blast hits to 17327 proteins in 3916 species: Archae - 27; Bacteria - 6603; Metazoa - 1325; Fungi - 1881; Plants - 2522; Viruses - 0; Other Eukaryotes - 4975 (source: NCBI BLink).  protein_id AT1G12900.1p  transcript_id AT1G12900.1  protein_id AT1G12900.1p  transcript_id AT1G12900.1  
At1g12910	chr1:004395114	0.0	C/4395114-4396154	AT1G12910.1  CDS  gene_syn ANTHOCYANIN11, ATAN11, F13K23.16, F13K23_16, LIGHT-REGULATED WD 1, LWD1  gene ATAN11  function Encodes a protein with similarity to the petunia WD repeat protein an11.  go_component cellular_component|GO:0005575||ND  go_process anthocyanin biosynthetic process|GO:0009718|12369624|NAS  go_process entrainment of circadian clock by photoperiod|GO:0043153|18676661|IEP  go_process photoperiodism, flowering|GO:0048573|18676661|IMP  go_function nucleotide binding|GO:0000166||ISS  product ATAN11 (ANTHOCYANIN11); nucleotide binding  note ANTHOCYANIN11 (ATAN11); FUNCTIONS IN: nucleotide binding; INVOLVED IN: photoperiodism, flowering, anthocyanin biosynthetic process, entrainment of circadian clock by photoperiod; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: LWD2 (LIGHT-REGULATED WD 2); nucleotide binding (TAIR:AT3G26640.1); Has 3453 Blast hits to 3259 proteins in 251 species: Archae - 6; Bacteria - 163; Metazoa - 1585; Fungi - 798; Plants - 447; Viruses - 0; Other Eukaryotes - 454 (source: NCBI BLink).  protein_id AT1G12910.1p  transcript_id AT1G12910.1  protein_id AT1G12910.1p  transcript_id AT1G12910.1  
At1g12920	chr1:004396555	0.0	C/4396555-4397859	AT1G12920.1  CDS  gene_syn ERF1-2, EUKARYOTIC RELEASE FACTOR 1-2, F13K23.17, F13K23_17  gene ERF1-2  function Encodes a eukaryotic release factor one homolog.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component translation release factor complex|GO:0018444||TAS  go_process translational termination|GO:0006415|15474304|IGI  go_process translational termination|GO:0006415||ISS  go_function translation release factor activity|GO:0003747|15474304|IGI  go_function translation release factor activity|GO:0003747||ISS  product ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2); translation release factor  note EUKARYOTIC RELEASE FACTOR 1-2 (ERF1-2); FUNCTIONS IN: translation release factor activity; INVOLVED IN: translational termination; LOCATED IN: translation release factor complex, plasma membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: eRF1 domain 2 (InterPro:IPR005141), eRF1 domain 3 (InterPro:IPR005142), eRF1 domain 1 (InterPro:IPR005140), Peptide chain release factor eRF/aRF subunit 1 (InterPro:IPR004403); BEST Arabidopsis thaliana protein match is: ERF1-3 (eukaryotic release factor 1-3); translation release factor (TAIR:AT3G26618.1); Has 793 Blast hits to 791 proteins in 273 species: Archae - 185; Bacteria - 0; Metazoa - 164; Fungi - 97; Plants - 79; Viruses - 1; Other Eukaryotes - 267 (source: NCBI BLink).  protein_id AT1G12920.1p  transcript_id AT1G12920.1  protein_id AT1G12920.1p  transcript_id AT1G12920.1  
At1g12930	chr1:004405292	0.0	C/4405292-4405495,4405107-4405205,4404818-4405024,4404608-4404727,4404439-4404522,4404285-4404341,4403968-4404096,4403776-4403837,4403332-4403388,4403083-4403206,4402518-4402652,4402145-4402225,4401779-4401892,4401616-4401695,4401304-4401439,4401047-4401196,4400657-4400742,4400176-4400363,4399914-4400006,4399548-4399735,4399347-4399458,4399105-4399262,4398916-4399032,4398588-4398824	AT1G12930.1  CDS  gene_syn F13K23.18, F13K23_18  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product importin-related  note importin-related; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exportin-1/Importin-beta-like (InterPro:IPR013598), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: transportin-SR-related (TAIR:AT5G62600.1); Has 361 Blast hits to 359 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 213; Fungi - 89; Plants - 36; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G12930.1p  transcript_id AT1G12930.1  protein_id AT1G12930.1p  transcript_id AT1G12930.1  
At1g12935	chr1:004406318	0.0	C/4406318-4406746	AT1G12935.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to putative polyprotein, blastp match of 48% identity and 1.9e-06 P-value to GP|13957647|gb|AAK50602.1|AC084404_27|AC084404 putative polyprotein {Oryza sativa}  
At1g12938	chr1:004412887	0.0	W/4412887-4413057	AT1G12938.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G12938.1p  transcript_id AT1G12938.1  protein_id AT1G12938.1p  transcript_id AT1G12938.1  
At1g12940	chr1:004416405	0.0	W/4416405-4417091,4417442-4417917,4417992-4418337	AT1G12940.1  CDS  gene_syn ATNRT2.5, F13K23.20, F13K23_20, nitrate transporter2.5  gene ATNRT2.5  function member of High affinity nitrate transporter family  go_component plasma membrane|GO:0005886|17317660|IDA  go_function nitrate transmembrane transporter activity|GO:0015112||ISS  product ATNRT2.5 (nitrate transporter2.5); nitrate transmembrane transporter  note nitrate transporter2.5 (ATNRT2.5); FUNCTIONS IN: nitrate transmembrane transporter activity; LOCATED IN: plasma membrane; EXPRESSED IN: stem, inflorescence meristem; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ATNRT2:1 (NITRATE TRANSPORTER 2:1); nitrate transmembrane transporter (TAIR:AT1G08090.1); Has 2955 Blast hits to 2803 proteins in 715 species: Archae - 31; Bacteria - 2372; Metazoa - 73; Fungi - 180; Plants - 153; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).  protein_id AT1G12940.1p  transcript_id AT1G12940.1  protein_id AT1G12940.1p  transcript_id AT1G12940.1  
At1g12950	chr1:004419849	0.0	W/4419849-4420214,4420525-4421066,4421167-4421253,4421512-4421568,4421658-4421896,4421995-4422113,4422212-4422298,4422391-4422462	AT1G12950.1  CDS  gene_syn F13K23.21, F13K23_21  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; EXPRESSED IN: sperm cell, root; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT3G26590.1); Has 5476 Blast hits to 5436 proteins in 1091 species: Archae - 109; Bacteria - 3504; Metazoa - 121; Fungi - 206; Plants - 705; Viruses - 0; Other Eukaryotes - 831 (source: NCBI BLink).  protein_id AT1G12950.1p  transcript_id AT1G12950.1  protein_id AT1G12950.1p  transcript_id AT1G12950.1  
At1g12960	chr1:004423047	0.0	C/4423047-4423155,4422914-4422990,4422707-4422835	AT1G12960.1  CDS  gene_syn F13K23.22, F13K23_22  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L27A (RPL27aA)  note 60S ribosomal protein L27A (RPL27aA); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, ribosome; CONTAINS InterPro DOMAIN/s: Ribosomal protein L15 (InterPro:IPR001196); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT1G70600.1); Has 612 Blast hits to 610 proteins in 243 species: Archae - 0; Bacteria - 0; Metazoa - 285; Fungi - 106; Plants - 96; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).  protein_id AT1G12960.1p  transcript_id AT1G12960.1  protein_id AT1G12960.1p  transcript_id AT1G12960.1  
At1g12970	chr1:004423727	0.0	W/4423727-4424317,4424745-4424911,4424996-4425632	AT1G12970.1  CDS  gene_syn F13K23.23, F13K23_23  go_function protein binding|GO:0005515||IEA  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT3G26500.1); Has 53674 Blast hits to 22120 proteins in 849 species: Archae - 18; Bacteria - 4970; Metazoa - 26455; Fungi - 1600; Plants - 17244; Viruses - 17; Other Eukaryotes - 3370 (source: NCBI BLink).  protein_id AT1G12970.1p  transcript_id AT1G12970.1  protein_id AT1G12970.1p  transcript_id AT1G12970.1  
At1g12980	chr1:004429791	0.0	W/4429791-4430777	AT1G12980.1  CDS  gene_syn DORNROSCHEN, DRN, ENHANCER OF SHOOT REGENERATION 1, ESR1, F3F19.1, F3F19_1  gene ESR1  function Encodes an AP2/ERF protein, is expressed in a subdomain of meristem stem cells, in lateral organ anlagen, and transiently in the distal domain of organ primordia. It is a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ESR1). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. Can confer cytokinin-independent shoot formation and causes severe meristem defects when overexpressed in Arabidopsis root explants. Involved in controlling embryogenesis and embryo patterning by interaction with PHAVOLUTA.  go_component nucleus|GO:0005634|19369397|IDA  go_component nucleus|GO:0005634||ISS  go_component cytosol|GO:0005829|19369397|IEP  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to cytokinin stimulus|GO:0009735|11752375|IEP  go_process embryonic pattern specification|GO:0009880|17376809|IMP  go_process organ morphogenesis|GO:0009887|11752375|IMP  go_process specification of organ axis polarity|GO:0010084|12615942|IMP  go_process cotyledon development|GO:0048825|17376809|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11752375|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function protein binding|GO:0005515||NAS  product ESR1 (ENHANCER OF SHOOT REGENERATION 1); DNA binding / protein binding / transcription factor  note ENHANCER OF SHOOT REGENERATION 1 (ESR1); FUNCTIONS IN: protein binding, transcription factor activity, DNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: embryo, embryonic shoot apical meristem; EXPRESSED DURING: C globular stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: DRNL (DORNROSCHEN-LIKE); DNA binding / transcription factor (TAIR:AT1G24590.1); Has 3888 Blast hits to 3690 proteins in 203 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 3; Plants - 3873; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G12980.1p  transcript_id AT1G12980.1  protein_id AT1G12980.1p  transcript_id AT1G12980.1  
At1g12990	chr1:004433973	0.0	W/4433973-4434053,4434455-4435552	AT1G12990.1  CDS  gene_syn F3F19.2, F3F19_2  go_component membrane|GO:0016020||IEA  go_process protein amino acid N-linked glycosylation|GO:0006487||IEA  go_function acetylglucosaminyltransferase activity|GO:0008375||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyl transferase family 17 protein  note glycosyl transferase family 17 protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: protein amino acid N-linked glycosylation; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 17 (InterPro:IPR006813); BEST Arabidopsis thaliana protein match is: glycosyl transferase family 17 protein (TAIR:AT1G67880.1); Has 972 Blast hits to 971 proteins in 58 species: Archae - 0; Bacteria - 24; Metazoa - 46; Fungi - 23; Plants - 68; Viruses - 4; Other Eukaryotes - 807 (source: NCBI BLink).  protein_id AT1G12990.1p  transcript_id AT1G12990.1  protein_id AT1G12990.1p  transcript_id AT1G12990.1  
At1g13000	chr1:004438662	0.0	C/4438662-4438693,4438451-4438562,4438207-4438356,4438028-4438132,4437817-4437900,4437631-4437746,4437432-4437533,4437223-4437336,4437081-4437137,4436885-4437005,4436716-4436790,4436593-4436628,4436402-4436503	AT1G13000.1  CDS  gene_syn F3F19.3, F3F19_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26440.2); Has 194 Blast hits to 193 proteins in 14 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 179; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G13000.1p  transcript_id AT1G13000.1  protein_id AT1G13000.1p  transcript_id AT1G13000.1  
At1g13000	chr1:004438662	0.0	C/4438662-4438693,4438451-4438562,4438207-4438356,4438028-4438132,4437817-4437900,4437631-4437746,4437432-4437533,4437223-4437336,4437081-4437137,4436885-4437005,4436716-4436790,4436593-4436628,4436402-4436503	AT1G13000.2  CDS  gene_syn F3F19.3, F3F19_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26440.2); Has 194 Blast hits to 193 proteins in 14 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 179; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G13000.2p  transcript_id AT1G13000.2  protein_id AT1G13000.2p  transcript_id AT1G13000.2  
At1g13010	chr1:004440214	0.0	W/4440214-4440286	AT1G13010.1  tRNA  gene_syn 51346.TRNA-ARG-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: ACG)  transcript_id AT1G13010.1  
At1g13020	chr1:004442331	0.0	C/4442331-4443520,4441169-4441600,4440927-4440954	AT1G13020.1  CDS  gene_syn F3F19.4, F3F19_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function translation initiation factor activity|GO:0003743||ISS  product eukaryotic translation initiation factor, putative (EIF4B5)  note eukaryotic translation initiation factor, putative (EIF4B5); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plant specific eukaryotic initiation factor 4B (InterPro:IPR010433); BEST Arabidopsis thaliana protein match is: EIF4B1; translation initiation factor (TAIR:AT3G26400.1); Has 37479 Blast hits to 17094 proteins in 1048 species: Archae - 48; Bacteria - 11060; Metazoa - 12404; Fungi - 2655; Plants - 4577; Viruses - 418; Other Eukaryotes - 6317 (source: NCBI BLink).  protein_id AT1G13020.1p  transcript_id AT1G13020.1  protein_id AT1G13020.1p  transcript_id AT1G13020.1  
At1g13030	chr1:004447081	0.0	C/4447081-4447278,4446923-4446987,4446579-4446839,4446329-4446502,4446158-4446224,4445926-4446003,4445620-4445806,4445493-4445533,4445222-4445413,4445061-4445132,4444818-4444967,4444553-4444703,4444284-4444474	AT1G13030.1  CDS  gene_syn F3F19.5, F3F19_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product sphere organelles protein-related  note sphere organelles protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; Has 13894 Blast hits to 8686 proteins in 584 species: Archae - 12; Bacteria - 813; Metazoa - 5398; Fungi - 1230; Plants - 486; Viruses - 98; Other Eukaryotes - 5857 (source: NCBI BLink).  protein_id AT1G13030.1p  transcript_id AT1G13030.1  protein_id AT1G13030.1p  transcript_id AT1G13030.1  
At1g13040	chr1:004447647	0.0	W/4447647-4449200	AT1G13040.1  CDS  gene_syn F3F19.6, F3F19_6  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G62910.1); Has 23476 Blast hits to 5984 proteins in 177 species: Archae - 3; Bacteria - 14; Metazoa - 544; Fungi - 535; Plants - 21453; Viruses - 0; Other Eukaryotes - 927 (source: NCBI BLink).  protein_id AT1G13040.1p  transcript_id AT1G13040.1  protein_id AT1G13040.1p  transcript_id AT1G13040.1  
At1g13050	chr1:004450568	0.0	W/4450568-4451521	AT1G13050.1  CDS  gene_syn F3F19.7, F3F19_7  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 384 Blast hits to 355 proteins in 83 species: Archae - 0; Bacteria - 20; Metazoa - 86; Fungi - 33; Plants - 210; Viruses - 7; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT1G13050.1p  transcript_id AT1G13050.1  protein_id AT1G13050.1p  transcript_id AT1G13050.1  
At1g13050	chr1:004450964	0.0	W/4450964-4451521	AT1G13050.2  CDS  gene_syn F3F19.7, F3F19_7  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1).  protein_id AT1G13050.2p  transcript_id AT1G13050.2  protein_id AT1G13050.2p  transcript_id AT1G13050.2  
At1g13060	chr1:004452641	0.0	W/4452641-4452760,4452855-4452984,4453279-4453385,4453882-4454016,4454114-4454217,4454340-4454440,4454536-4454663	AT1G13060.1  CDS  gene_syn 20S PROTEASOME BETA SUBUNIT E1, 20S PROTEASOME BETA SUBUNIT PBE1, F3F19.8, F3F19_8, PBE1  gene PBE1  function Encodes 20S proteasome beta subunit PBE1 (PBE1).  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function endopeptidase activity|GO:0004175||IEA  go_function threonine-type endopeptidase activity|GO:0004298||IEA  go_component proteasome core complex|GO:0005839|9373170|TAS  go_component proteasome core complex|GO:0005839|9611183|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_function peptidase activity|GO:0008233||ISS  product PBE1; endopeptidase/ peptidase/ threonine-type endopeptidase  note PBE1; FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: response to cadmium ion, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex; EXPRESSED IN: guard cell, cultured cell, pollen tube, leaf; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Peptidase T1A, proteasome beta-subunit (InterPro:IPR000243), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: 20S proteasome beta subunit E, putative (TAIR:AT3G26340.1); Has 4371 Blast hits to 4369 proteins in 408 species: Archae - 458; Bacteria - 181; Metazoa - 1579; Fungi - 898; Plants - 538; Viruses - 0; Other Eukaryotes - 717 (source: NCBI BLink).  protein_id AT1G13060.1p  transcript_id AT1G13060.1  protein_id AT1G13060.1p  transcript_id AT1G13060.1  
At1g13070	chr1:004455477	0.0	W/4455477-4457099	AT1G13070.1  pseudogenic_transcript  pseudo  gene_syn CYP71B27, F3F19.9, F3F19_9  gene CYP71B27  function putative cytochrome P450  note pseudogene, putative cytochrome P450 monooxygenase, strong similarity to gb|D78605 cytochrome P450 monooxygenase from Arabidopsis thaliana and is a member of the PF|00067 Cytochrome P450 family; blastp match of 57% identity and 4.7e-113 P-value to GP|16507125|gb|AAL24049.1|AF426451_1|AF426451 cytochrome P450 {Citrus sinensis}  
At1g13080	chr1:004459212	0.0	W/4459212-4460108,4460196-4460807	AT1G13080.1  CDS  gene_syn CYP71B2, CYTOCHROME P450 71B2, CYTOCHROME P450 MONOOXYGENASE 71B2, F3F19.10, F3F19_10  gene CYP71B2  function cytochrome P450 monooxygenase  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process heat acclimation|GO:0010286|16807682|IEP  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function oxygen binding|GO:0019825||ISS  product CYP71B2 (CYTOCHROME P450 71B2); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYTOCHROME P450 71B2 (CYP71B2); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: response to cyclopentenone, heat acclimation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973); BEST Arabidopsis thaliana protein match is: CYP71B19; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G26170.1); Has 23588 Blast hits to 23421 proteins in 1264 species: Archae - 21; Bacteria - 2037; Metazoa - 10421; Fungi - 4388; Plants - 5813; Viruses - 3; Other Eukaryotes - 905 (source: NCBI BLink).  protein_id AT1G13080.1p  transcript_id AT1G13080.1  protein_id AT1G13080.1p  transcript_id AT1G13080.1  
At1g13080	chr1:004459493	0.0	W/4459493-4459569,4459643-4460108,4460196-4460807	AT1G13080.2  CDS  gene_syn CYP71B2, CYTOCHROME P450 71B2, CYTOCHROME P450 MONOOXYGENASE 71B2, F3F19.10, F3F19_10  gene CYP71B2  function cytochrome P450 monooxygenase  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process heat acclimation|GO:0010286|16807682|IEP  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function oxygen binding|GO:0019825||ISS  product CYP71B2 (CYTOCHROME P450 71B2); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYTOCHROME P450 71B2 (CYP71B2); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: response to cyclopentenone, heat acclimation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP71B20; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G26180.1); Has 22997 Blast hits to 22941 proteins in 1254 species: Archae - 21; Bacteria - 2025; Metazoa - 10211; Fungi - 4343; Plants - 5498; Viruses - 3; Other Eukaryotes - 896 (source: NCBI BLink).  protein_id AT1G13080.2p  transcript_id AT1G13080.2  protein_id AT1G13080.2p  transcript_id AT1G13080.2  
At1g13090	chr1:004461846	0.0	W/4461846-4462730,4462813-4463400	AT1G13090.1  CDS  gene_syn CYP71B28, CYTOCHROME P450, FAMILY 71, SUBFAMILY B, POLYPEPTIDE 28, F3F19.11, F3F19_11  gene CYP71B28  function putative cytochrome P450  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71B28; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71B28; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP71B29; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G13100.1); Has 23019 Blast hits to 22872 proteins in 1237 species: Archae - 21; Bacteria - 1770; Metazoa - 10353; Fungi - 4324; Plants - 5734; Viruses - 0; Other Eukaryotes - 817 (source: NCBI BLink).  protein_id AT1G13090.1p  transcript_id AT1G13090.1  protein_id AT1G13090.1p  transcript_id AT1G13090.1  
At1g13100	chr1:004463983	0.0	W/4463983-4464867,4464951-4465538	AT1G13100.1  CDS  gene_syn CYP71B29, CYTOCHROME P450, FAMILY 71, SUBFAMILY B, POLYPEPTIDE 29, F3F19.12, F3F19_12  gene CYP71B29  function putative cytochrome P450  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71B29; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71B29; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; EXPRESSED IN: cotyledon, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP71B28; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G13090.1); Has 23079 Blast hits to 22914 proteins in 1251 species: Archae - 21; Bacteria - 1843; Metazoa - 10371; Fungi - 4245; Plants - 5757; Viruses - 0; Other Eukaryotes - 842 (source: NCBI BLink).  protein_id AT1G13100.1p  transcript_id AT1G13100.1  protein_id AT1G13100.1p  transcript_id AT1G13100.1  
At1g13110	chr1:004467272	0.0	W/4467272-4468174,4468246-4468857	AT1G13110.1  CDS  gene_syn CYP71B7, CYTOCHROME P450, FAMILY, F3F19.13, F3F19_13  gene CYP71B7  function member of CYP71B  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71B7; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71B7; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP71B23; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G26210.1); Has 23261 Blast hits to 23085 proteins in 1248 species: Archae - 21; Bacteria - 1903; Metazoa - 10490; Fungi - 4226; Plants - 5778; Viruses - 0; Other Eukaryotes - 843 (source: NCBI BLink).  protein_id AT1G13110.1p  transcript_id AT1G13110.1  protein_id AT1G13110.1p  transcript_id AT1G13110.1  
At1g13120	chr1:004472774	0.0	C/4472774-4472775,4472492-4472656,4472214-4472369,4472002-4472113,4471747-4471895,4471270-4471619,4471039-4471148,4470886-4470956,4470499-4470580,4470237-4470305,4470071-4470154,4469917-4469985,4469701-4469829,4469334-4469621	AT1G13120.1  CDS  gene_syn F3F19.14, F3F19_14, emb1745, embryo defective 1745  gene emb1745  go_component nuclear pore|GO:0005643||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product emb1745 (embryo defective 1745)  note embryo defective 1745 (emb1745); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: nuclear pore; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GLE1-like (InterPro:IPR012476); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G05523.1); Has 32122 Blast hits to 20275 proteins in 1392 species: Archae - 166; Bacteria - 5743; Metazoa - 12337; Fungi - 2633; Plants - 1041; Viruses - 221; Other Eukaryotes - 9981 (source: NCBI BLink).  protein_id AT1G13120.1p  transcript_id AT1G13120.1  protein_id AT1G13120.1p  transcript_id AT1G13120.1  
At1g13130	chr1:004474726	0.0	W/4474726-4475151,4476425-4476672,4476752-4477272,4477357-4477820	AT1G13130.1  CDS  gene_syn F3F19.15, F3F19_15  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 5 protein / cellulase family protein  note glycosyl hydrolase family 5 protein / cellulase family protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Ricin B-related lectin (InterPro:IPR008997), Ricin B lectin (InterPro:IPR000772), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 5 protein / cellulase family protein (TAIR:AT3G26140.1); Has 228 Blast hits to 221 proteins in 80 species: Archae - 0; Bacteria - 80; Metazoa - 0; Fungi - 62; Plants - 69; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G13130.1p  transcript_id AT1G13130.1  protein_id AT1G13130.1p  transcript_id AT1G13130.1  
At1g13140	chr1:004478667	0.0	C/4478667-4480271	AT1G13140.1  CDS  gene_syn CYP86C3, CYTOCHROME P450, FAMILY 86, SUBFAMILY C, POLYPEPTIDE 3, F3F19.16, F3F19_16  gene CYP86C3  function member of CYP86C  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP86C3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP86C3; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, sepal, cauline leaf, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP86C4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G13150.1); Has 20588 Blast hits to 20538 proteins in 1086 species: Archae - 19; Bacteria - 1390; Metazoa - 9564; Fungi - 4077; Plants - 4772; Viruses - 3; Other Eukaryotes - 763 (source: NCBI BLink).  protein_id AT1G13140.1p  transcript_id AT1G13140.1  protein_id AT1G13140.1p  transcript_id AT1G13140.1  
At1g13145	chr1:004480860	0.0	W/4480860-4481334	AT1G13145.1  pseudogenic_transcript  pseudo  function pseudogene of unknown protein  note expressed protein  
At1g13150	chr1:004481995	0.0	C/4481995-4483584	AT1G13150.1  CDS  gene_syn CYP86C4, CYTOCHROME P450, FAMILY 86, SUBFAMILY C, POLYPEPTIDE 4, F3F19.17, F3F19_17  gene CYP86C4  function member of CYP86C  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP86C4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP86C4; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP86C3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G13140.1); Has 20486 Blast hits to 20432 proteins in 1084 species: Archae - 19; Bacteria - 1411; Metazoa - 9552; Fungi - 3961; Plants - 4793; Viruses - 3; Other Eukaryotes - 747 (source: NCBI BLink).  protein_id AT1G13150.1p  transcript_id AT1G13150.1  protein_id AT1G13150.1p  transcript_id AT1G13150.1  
At1g13160	chr1:004484634	0.0	W/4484634-4485038,4485168-4485335,4485425-4485558,4485651-4485789,4486018-4486164,4486242-4486304,4486430-4486525,4486598-4486657,4486738-4486812,4486906-4486959,4487062-4487163,4487246-4487860,4487948-4488046,4488131-4488388	AT1G13160.1  CDS  gene_syn F3F19.18, F3F19_18  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product SDA1 family protein  note SDA1 family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Region of unknown function, nucleolar NUC130/133, N-terminal (InterPro:IPR012977), Armadillo-type fold (InterPro:IPR016024), SDA1 (InterPro:IPR007949); BEST Arabidopsis thaliana protein match is: SDA1 family protein (TAIR:AT4G31520.1); Has 27617 Blast hits to 12077 proteins in 683 species: Archae - 123; Bacteria - 9386; Metazoa - 7313; Fungi - 3149; Plants - 932; Viruses - 547; Other Eukaryotes - 6167 (source: NCBI BLink).  protein_id AT1G13160.1p  transcript_id AT1G13160.1  protein_id AT1G13160.1p  transcript_id AT1G13160.1  
At1g13170	chr1:004491727	0.0	C/4491727-4492278,4491281-4491634,4490951-4491035,4490330-4490790,4489996-4490151,4489532-4489840,4489115-4489459,4488826-4489014	AT1G13170.1  CDS  gene_syn F3F19.19, F3F19_19, ORP1D, OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1D  gene ORP1D  go_process steroid metabolic process|GO:0008202||IEA  go_process steroid metabolic process|GO:0008202||ISS  go_function oxysterol binding|GO:0008142||ISS  product ORP1D (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1D); oxysterol binding  note OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1D (ORP1D); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Oxysterol-binding protein (InterPro:IPR000648), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: ORP1C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1C); oxysterol binding / phosphoinositide binding (TAIR:AT4G08180.1); Has 1950 Blast hits to 1858 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 1067; Fungi - 480; Plants - 167; Viruses - 0; Other Eukaryotes - 236 (source: NCBI BLink).  protein_id AT1G13170.1p  transcript_id AT1G13170.1  protein_id AT1G13170.1p  transcript_id AT1G13170.1  
At1g13180	chr1:004495394	0.0	W/4495394-4495440,4495535-4495994,4496367-4496513,4496765-4496857,4496993-4497112,4497534-4497644,4497725-4497850,4497934-4498032,4498124-4498204	AT1G13180.1  CDS  gene_syn ACTIN-RELATED PROTEIN 3, ARABIDOPSIS THALIANA ACTIN-RELATED PROTEIN 3, ARP3, ATARP3, DIS1, DISTORTED TRICHOMES 1, F3F19.20, F3F19_20  gene DIS1  function Mutant has defect in trichome cell expansion and actin organization resulting in a distorted trichome phenotype.  go_function actin binding|GO:0003779||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component Arp2/3 protein complex|GO:0005885|12906796|TAS  go_process cell morphogenesis|GO:0000902|12837952|IMP  go_process actin filament organization|GO:0007015|10572033|IMP  go_process multidimensional cell growth|GO:0009825||IMP  go_process trichome morphogenesis|GO:0010090||IMP  go_function structural constituent of cytoskeleton|GO:0005200||ISS  product DIS1 (DISTORTED TRICHOMES 1); ATP binding / actin binding / protein binding / structural constituent of cytoskeleton  note DISTORTED TRICHOMES 1 (DIS1); FUNCTIONS IN: protein binding, actin binding, structural constituent of cytoskeleton, ATP binding; INVOLVED IN: cell morphogenesis, multidimensional cell growth, actin filament organization, trichome morphogenesis; LOCATED IN: Arp2/3 protein complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000), Actin-related protein 3 (InterPro:IPR015623); BEST Arabidopsis thaliana protein match is: actin, putative (TAIR:AT2G42100.1); Has 9381 Blast hits to 9258 proteins in 2042 species: Archae - 6; Bacteria - 2; Metazoa - 4621; Fungi - 1832; Plants - 980; Viruses - 2; Other Eukaryotes - 1938 (source: NCBI BLink).  protein_id AT1G13180.1p  transcript_id AT1G13180.1  protein_id AT1G13180.1p  transcript_id AT1G13180.1  
At1g13190	chr1:004499633	0.0	W/4499633-4501354	AT1G13190.1  CDS  gene_syn F3F19.21, F3F19_21  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT5G55670.1); Has 27863 Blast hits to 14829 proteins in 807 species: Archae - 4; Bacteria - 9414; Metazoa - 9821; Fungi - 2223; Plants - 3027; Viruses - 156; Other Eukaryotes - 3218 (source: NCBI BLink).  protein_id AT1G13190.1p  transcript_id AT1G13190.1  protein_id AT1G13190.1p  transcript_id AT1G13190.1  
At1g13195	chr1:004502709	0.0	C/4502709-4502855,4502514-4502580,4502079-4502316,4501778-4501994	AT1G13195.2  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G24440.1); Has 632 Blast hits to 631 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 313; Fungi - 15; Plants - 171; Viruses - 16; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT1G13195.2p  transcript_id AT1G13195.2  protein_id AT1G13195.2p  transcript_id AT1G13195.2  
At1g13195	chr1:004503250	0.0	C/4503250-4503347,4502709-4502871,4502514-4502580,4502079-4502316,4501778-4501994	AT1G13195.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G24440.1); Has 629 Blast hits to 628 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 311; Fungi - 15; Plants - 172; Viruses - 16; Other Eukaryotes - 115 (source: NCBI BLink).  protein_id AT1G13195.1p  transcript_id AT1G13195.1  protein_id AT1G13195.1p  transcript_id AT1G13195.1  
At1g13200	chr1:004507221	0.0	C/4507221-4508528	AT1G13200.1  CDS  gene_syn F3F19.23, F3F19_23  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: SCRM2 (SCREAM 2); DNA binding / transcription factor (TAIR:AT1G12860.1); Has 947 Blast hits to 936 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 945; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G13200.1p  transcript_id AT1G13200.1  protein_id AT1G13200.1p  transcript_id AT1G13200.1  
At1g13210	chr1:004513382	0.0	C/4513382-4513774,4512847-4513296,4511871-4512769,4511675-4511785,4511299-4511575,4511126-4511214,4510920-4511028,4510610-4510825,4510280-4510504,4509995-4510186,4509252-4509902	AT1G13210.1  CDS  gene_syn ACA.l, F3F19.24, F3F19_24, autoinhibited Ca2+/ATPase II  gene ACA.l  go_component plasma membrane|GO:0005886|17317660|IDA  go_process ATP biosynthetic process|GO:0006754||IEA  go_process metabolic process|GO:0008152||IEA  go_process phospholipid transport|GO:0015914||IEA  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662||ISS  product ACA.l (autoinhibited Ca2+/ATPase II); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism / calmodulin binding  note autoinhibited Ca2+/ATPase II (ACA.l); FUNCTIONS IN: calmodulin binding, ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: metabolic process, phospholipid transport, ATP biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, phospholipid-translocating, flippase (InterPro:IPR006539), ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), HAD superfamily hydrolase-like, type 3 (InterPro:IPR013200); BEST Arabidopsis thaliana protein match is: haloacid dehalogenase-like hydrolase family protein (TAIR:AT3G25610.1); Has 8358 Blast hits to 7200 proteins in 893 species: Archae - 91; Bacteria - 1921; Metazoa - 2739; Fungi - 1382; Plants - 638; Viruses - 0; Other Eukaryotes - 1587 (source: NCBI BLink).  protein_id AT1G13210.1p  transcript_id AT1G13210.1  protein_id AT1G13210.1p  transcript_id AT1G13210.1  
At1g13220	chr1:004515660	0.0	W/4515660-4515983,4516150-4516359,4516601-4516854,4516939-4517209,4517299-4517415	AT1G13220.1  CDS  gene_syn F3F19.25, F3F19_25, LINC2, LITTLE NUCLEI2  gene LINC2  function Encodes a nuclear coiled-coil protein related to the carrot peripheral nuclear protein NMCP1 that is involved in the determination of plant nuclear structure.  go_component nucleoplasm|GO:0005654|17873096|IDA  go_process nucleus organization|GO:0006997|17873096|IGI  product LINC2 (LITTLE NUCLEI2)  note LITTLE NUCLEI2 (LINC2); INVOLVED IN: nucleus organization; LOCATED IN: nucleoplasm; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: LINC3 (LITTLE NUCLEI3) (TAIR:AT1G68790.1); Has 87791 Blast hits to 41538 proteins in 1681 species: Archae - 911; Bacteria - 9018; Metazoa - 45048; Fungi - 5562; Plants - 2874; Viruses - 274; Other Eukaryotes - 24104 (source: NCBI BLink).  protein_id AT1G13220.1p  transcript_id AT1G13220.1  protein_id AT1G13220.1p  transcript_id AT1G13220.1  
At1g13220	chr1:004515699	0.0	W/4515699-4515983,4516150-4516359,4516601-4516854,4516939-4517209,4517299-4517382,4517573-4519482,4519699-4520071	AT1G13220.2  CDS  gene_syn F3F19.25, F3F19_25, LINC2, LITTLE NUCLEI2  gene LINC2  function Encodes a nuclear coiled-coil protein related to the carrot peripheral nuclear protein NMCP1 that is involved in the determination of plant nuclear structure.  go_component nucleoplasm|GO:0005654|17873096|IDA  go_process nucleus organization|GO:0006997|17873096|IGI  product LINC2 (LITTLE NUCLEI2)  note LITTLE NUCLEI2 (LINC2); INVOLVED IN: nucleus organization; LOCATED IN: nucleoplasm; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: LINC3 (LITTLE NUCLEI3) (TAIR:AT1G68790.1); Has 273179 Blast hits to 113939 proteins in 2595 species: Archae - 2377; Bacteria - 40399; Metazoa - 120742; Fungi - 19356; Plants - 9669; Viruses - 1336; Other Eukaryotes - 79300 (source: NCBI BLink).  protein_id AT1G13220.2p  transcript_id AT1G13220.2  protein_id AT1G13220.2p  transcript_id AT1G13220.2  
At1g13230	chr1:004520679	0.0	W/4520679-4520894,4521381-4522439	AT1G13230.1  CDS  gene_syn F3F19.26, F3F19_26  function Encodes a leucine-rich repeat protein pii-2. Located in the endoplasmic reticulum/plasma membrane continuum in Arabidopsis roots. Required for growth promotion and enhanced seed production mediated by the endophytic fungus Piriformospora indica in Arabidopsis.  go_component chloroplast|GO:0009507|15028209|IDA  go_component plasma membrane|GO:0005886|17397506|IDA  go_process signal transduction|GO:0007165|11751054|IC  go_process response to symbiotic fungus|GO:0009610|17397506|IMP  go_process symbiosis, encompassing mutualism through parasitism|GO:0044403|17397506|IMP  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction, response to symbiotic fungus, symbiosis, encompassing mutualism through parasitism; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT3G25670.1); Has 48519 Blast hits to 18237 proteins in 738 species: Archae - 24; Bacteria - 2269; Metazoa - 14712; Fungi - 449; Plants - 28356; Viruses - 0; Other Eukaryotes - 2709 (source: NCBI BLink).  protein_id AT1G13230.1p  transcript_id AT1G13230.1  protein_id AT1G13230.1p  transcript_id AT1G13230.1  
At1g13240	chr1:004522709	0.0	C/4522709-4522782	AT1G13240.1  tRNA  gene_syn 51346.TRNA-ILE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ile (anticodon: AAT)  transcript_id AT1G13240.1  
At1g13245	chr1:004525852	0.0	C/4525852-4525977	AT1G13245.1  CDS  gene_syn DEVIL 4, DVL4, ROTUNDIFOLIA LIKE 17, RTFL17  gene RTFL17  go_process shoot development|GO:0048367|14871303|IMP  go_function molecular_function|GO:0003674||ND  product RTFL17 (ROTUNDIFOLIA LIKE 17)  note ROTUNDIFOLIA LIKE 17 (RTFL17); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: shoot development; EXPRESSED IN: stem, flower, root, leaf; CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); BEST Arabidopsis thaliana protein match is: RTFL15 (ROTUNDIFOLIA LIKE 15) (TAIR:AT1G68825.2); Has 68 Blast hits to 68 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13245.1p  transcript_id AT1G13245.1  protein_id AT1G13245.1p  transcript_id AT1G13245.1  
At1g13250	chr1:004528965	0.0	C/4528965-4530002	AT1G13250.1  CDS  gene_syn GATL3, Galacturonosyltransferase-like 3, T6J4.1, T6J4_1  gene GATL3  function Encodes a protein with putative galacturonosyltransferase activity.  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS  product GATL3 (Galacturonosyltransferase-like 3); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note Galacturonosyltransferase-like 3 (GATL3); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: GATL4 (Galacturonosyltransferase-like 4); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT3G06260.1); Has 1237 Blast hits to 1231 proteins in 253 species: Archae - 0; Bacteria - 444; Metazoa - 252; Fungi - 12; Plants - 437; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).  protein_id AT1G13250.1p  transcript_id AT1G13250.1  protein_id AT1G13250.1p  transcript_id AT1G13250.1  
At1g13260	chr1:004542386	0.0	W/4542386-4543420	AT1G13260.1  CDS  gene_syn RAV1, T6J4.2, T6J4_2  gene RAV1  function Encodes an AP2/B3 domain transcription factor which is upregulated in response to low temperature. It contains a B3 DNA binding domain. It has circadian regulation and may function as a negative growth regulator.  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process circadian rhythm|GO:0007623|15728337|IEP  go_process response to brassinosteroid stimulus|GO:0009741|15040885|IEP  go_process negative regulation of flower development|GO:0009910|15040885|IMP  go_process leaf development|GO:0048366|15040885|IMP  go_process lateral root development|GO:0048527|15040885|IMP  go_function DNA binding|GO:0003677|15548737|IDA  go_function DNA binding|GO:0003677|9862967|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function transcription repressor activity|GO:0016564|19324928|IDA  product RAV1; DNA binding / transcription factor/ transcription repressor  note RAV1; FUNCTIONS IN: transcription repressor activity, transcription factor activity, DNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Transcriptional factor B3 (InterPro:IPR003340), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT3G25730.1); Has 3785 Blast hits to 3621 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3768; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G13260.1p  transcript_id AT1G13260.1  protein_id AT1G13260.1p  transcript_id AT1G13260.1  
At1g13270	chr1:004544999	0.0	W/4544999-4545137,4545336-4545420,4545531-4545768,4545853-4546014,4546102-4546143,4546226-4546297,4546461-4546540,4546644-4546741,4546865-4546912,4547010-4547155	AT1G13270.1  CDS  gene_syn MAP1B, MAP1C, METHIONINE AMINOPEPTIDASE 1B  gene MAP1C  function Encodes a methionine aminopeptidase formerly called MAP1B, renamed to MAP1C.  go_component chloroplast|GO:0009507|18431481|IDA  go_function aminopeptidase activity|GO:0004177||IEA  go_function metalloexopeptidase activity|GO:0008235||IEA  go_component mitochondrion|GO:0005739|15681659|TAS  go_component chloroplast|GO:0009507|15681659|TAS  go_process proteolysis|GO:0006508||ISS  go_process N-terminal protein amino acid modification|GO:0031365|15681659|TAS  go_function metalloexopeptidase activity|GO:0008235||ISS  product MAP1C (METHIONINE AMINOPEPTIDASE 1B); aminopeptidase/ metalloexopeptidase  note METHIONINE AMINOPEPTIDASE 1B (MAP1C); FUNCTIONS IN: metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis, N-terminal protein amino acid modification; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24, structural domain (InterPro:IPR000994), Peptidase M24A, methionine aminopeptidase, subfamily 1 (InterPro:IPR002467), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: MAP1B (METHIONINE AMINOPEPTIDASE 1C); aminopeptidase/ metalloexopeptidase (TAIR:AT3G25740.1); Has 11416 Blast hits to 11395 proteins in 1565 species: Archae - 284; Bacteria - 6058; Metazoa - 350; Fungi - 172; Plants - 139; Viruses - 0; Other Eukaryotes - 4413 (source: NCBI BLink).  protein_id AT1G13270.1p  transcript_id AT1G13270.1  protein_id AT1G13270.1p  transcript_id AT1G13270.1  
At1g13270	chr1:004544999	0.0	W/4544999-4545137,4545336-4545420,4545531-4545768,4545853-4546014,4546102-4546143,4546226-4546297,4546461-4546574	AT1G13270.2  CDS  gene_syn MAP1B, MAP1C, METHIONINE AMINOPEPTIDASE 1B  gene MAP1C  function Encodes a methionine aminopeptidase formerly called MAP1B, renamed to MAP1C.  go_component chloroplast|GO:0009507|18431481|IDA  go_function aminopeptidase activity|GO:0004177||IEA  go_function metalloexopeptidase activity|GO:0008235||IEA  go_component mitochondrion|GO:0005739|15681659|TAS  go_component chloroplast|GO:0009507|15681659|TAS  go_process proteolysis|GO:0006508||ISS  go_process N-terminal protein amino acid modification|GO:0031365|15681659|TAS  go_function metalloexopeptidase activity|GO:0008235||ISS  product MAP1C (METHIONINE AMINOPEPTIDASE 1B); aminopeptidase/ metalloexopeptidase  note METHIONINE AMINOPEPTIDASE 1B (MAP1C); FUNCTIONS IN: metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis, N-terminal protein amino acid modification; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24, structural domain (InterPro:IPR000994), Peptidase M24A, methionine aminopeptidase, subfamily 1 (InterPro:IPR002467), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: MAP1B (METHIONINE AMINOPEPTIDASE 1C); aminopeptidase/ metalloexopeptidase (TAIR:AT3G25740.1); Has 8258 Blast hits to 8258 proteins in 1488 species: Archae - 180; Bacteria - 4808; Metazoa - 252; Fungi - 127; Plants - 114; Viruses - 0; Other Eukaryotes - 2777 (source: NCBI BLink).  protein_id AT1G13270.2p  transcript_id AT1G13270.2  protein_id AT1G13270.2p  transcript_id AT1G13270.2  
At1g13280	chr1:004547624	0.0	W/4547624-4547858,4548023-4548552	AT1G13280.1  CDS  gene_syn ALLENE OXIDE CYCLASE 4, AOC4, T6J4.4, T6J4_4  gene AOC4  function Encodes allene oxide cyclase. One of four genes in Arabidopsis that encode this enzyme, which catalyzes an essential step in jasmonic acid biosynthesis. Gene expression is reduced during senescence, a process that involves jasmonic acid signalling pathway.  go_component chloroplast|GO:0009507|18431481|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_process jasmonic acid biosynthetic process|GO:0009695|11891244|TAS  go_process jasmonic acid biosynthetic process|GO:0009695||TAS  go_function allene-oxide cyclase activity|GO:0046423|11891244|ISS  product AOC4 (ALLENE OXIDE CYCLASE 4); allene-oxide cyclase  note ALLENE OXIDE CYCLASE 4 (AOC4); FUNCTIONS IN: allene-oxide cyclase activity; INVOLVED IN: jasmonic acid biosynthetic process; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Allene oxide cyclase (InterPro:IPR009410); BEST Arabidopsis thaliana protein match is: AOC3 (ALLENE OXIDE CYCLASE 3); allene-oxide cyclase (TAIR:AT3G25780.1); Has 102 Blast hits to 102 proteins in 23 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13280.1p  transcript_id AT1G13280.1  protein_id AT1G13280.1p  transcript_id AT1G13280.1  
At1g13290	chr1:004551177	0.0	C/4551177-4551527,4550366-4550923	AT1G13290.1  CDS  gene_syn DEFECTIVELY ORGANIZED TRIBUTARIES 5, DOT5, T6J4.5, T6J4_5  gene DOT5  function Encodes a putative zinc finger protein (C2H2 family, type IIIA, subclass A1d) that has a WIP domain. Seedlings with mutations in DOT5 have a misaligned venation defect in their leaves and cotyledons. Additional developmental abnormalities, such as elongated petioles and aberrant phyllotaxy suggest that DOT5 is required for normal shoot and root development.  go_component intracellular|GO:0005622||IEA  go_process phloem or xylem histogenesis|GO:0010087|18643975|IMP  go_process leaf vascular tissue pattern formation|GO:0010305|18643975|IMP  go_process cotyledon vascular tissue pattern formation|GO:0010588|18643975|IMP  go_process root development|GO:0048364|18643975|IMP  go_process shoot development|GO:0048367|18643975|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product DOT5 (DEFECTIVELY ORGANIZED TRIBUTARIES 5); transcription factor  note DEFECTIVELY ORGANIZED TRIBUTARIES 5 (DOT5); FUNCTIONS IN: transcription factor activity; INVOLVED IN: cotyledon vascular tissue pattern formation, shoot development, phloem or xylem histogenesis, root development, leaf vascular tissue pattern formation; LOCATED IN: intracellular; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: NTT (NO TRANSMITTING TRACT); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT3G57670.1); Has 6737 Blast hits to 5247 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 6187; Fungi - 39; Plants - 384; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).  protein_id AT1G13290.1p  transcript_id AT1G13290.1  protein_id AT1G13290.1p  transcript_id AT1G13290.1  
At1g13300	chr1:004556977	0.0	W/4556977-4557118,4557293-4557576,4557753-4557942,4558068-4558144,4558250-4558591	AT1G13300.1  CDS  gene_syn T6J4.6, T6J4_6  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677|11118137|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT3G25790.1); Has 887 Blast hits to 878 proteins in 41 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 2; Plants - 863; Viruses - 8; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G13300.1p  transcript_id AT1G13300.1  protein_id AT1G13300.1p  transcript_id AT1G13300.1  
At1g13310	chr1:004562885	0.0	C/4562885-4562929,4562559-4562726,4562240-4562480,4561993-4562159,4561748-4561900,4561217-4561567	AT1G13310.1  CDS  gene_syn T6J4.7, T6J4_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: BRO1 (InterPro:IPR004328); Has 189 Blast hits to 189 proteins in 69 species: Archae - 0; Bacteria - 0; Metazoa - 116; Fungi - 49; Plants - 22; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G13310.1p  transcript_id AT1G13310.1  protein_id AT1G13310.1p  transcript_id AT1G13310.1  
At1g13320	chr1:004566956	0.0	C/4566956-4567348,4566337-4566583,4565992-4566104,4565800-4565879,4565470-4565611,4565295-4565375,4564863-4564967,4564507-4564689,4564323-4564415,4564089-4564232,4563970-4564002	AT1G13320.2  CDS  gene_syn 65 KDA REGULATORY SUBUNIT OF PROTEIN PHOSPHATASE 2A, PP2AA3, PR65, PROTEIN PHOSPHATASE 2A SUBUNIT A3, T6J4.8, T6J4_8  gene PP2AA3  function one of three genes encoding the 65 kDa regulatory subunit of protein phosphatase 2A (PP2A)  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function binding|GO:0005488||IEA  go_component protein phosphatase type 2A complex|GO:0000159|7811971|TAS  go_process regulation of phosphorylation|GO:0042325|7811971|ISS  go_function protein phosphatase type 2A regulator activity|GO:0008601||ISS  product PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3); binding / protein phosphatase type 2A regulator  note PROTEIN PHOSPHATASE 2A SUBUNIT A3 (PP2AA3); FUNCTIONS IN: binding, protein phosphatase type 2A regulator activity; INVOLVED IN: regulation of phosphorylation; LOCATED IN: cell wall, plasma membrane, protein phosphatase type 2A complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2); protein phosphatase type 2A regulator (TAIR:AT3G25800.2); Has 2626 Blast hits to 1175 proteins in 180 species: Archae - 8; Bacteria - 41; Metazoa - 1387; Fungi - 421; Plants - 226; Viruses - 0; Other Eukaryotes - 543 (source: NCBI BLink).  protein_id AT1G13320.2p  transcript_id AT1G13320.2  protein_id AT1G13320.2p  transcript_id AT1G13320.2  
At1g13320	chr1:004566956	0.0	C/4566956-4567348,4566337-4566583,4565992-4566104,4565800-4565879,4565470-4565611,4565295-4565375,4564863-4564967,4564507-4564689,4564323-4564415,4564093-4564232,4563938-4564004,4563692-4563811	AT1G13320.1  CDS  gene_syn 65 KDA REGULATORY SUBUNIT OF PROTEIN PHOSPHATASE 2A, PP2AA3, PR65, PROTEIN PHOSPHATASE 2A SUBUNIT A3, T6J4.8, T6J4_8  gene PP2AA3  function one of three genes encoding the 65 kDa regulatory subunit of protein phosphatase 2A (PP2A)  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function binding|GO:0005488||IEA  go_component protein phosphatase type 2A complex|GO:0000159|7811971|TAS  go_process regulation of phosphorylation|GO:0042325|7811971|ISS  go_function protein phosphatase type 2A regulator activity|GO:0008601||ISS  product PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3); binding / protein phosphatase type 2A regulator  note PROTEIN PHOSPHATASE 2A SUBUNIT A3 (PP2AA3); FUNCTIONS IN: binding, protein phosphatase type 2A regulator activity; INVOLVED IN: regulation of phosphorylation; LOCATED IN: cell wall, plasma membrane, protein phosphatase type 2A complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2); protein phosphatase type 2A regulator (TAIR:AT3G25800.1); Has 2173 Blast hits to 1272 proteins in 184 species: Archae - 12; Bacteria - 52; Metazoa - 1228; Fungi - 250; Plants - 172; Viruses - 0; Other Eukaryotes - 459 (source: NCBI BLink).  protein_id AT1G13320.1p  transcript_id AT1G13320.1  protein_id AT1G13320.1p  transcript_id AT1G13320.1  
At1g13330	chr1:004568008	0.0	W/4568008-4568035,4568143-4568168,4568529-4568796,4568883-4568953,4569040-4569228,4569312-4569410	AT1G13330.1  CDS  gene_syn T6J4.9, T6J4_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Tat binding protein 1-interacting (InterPro:IPR010776); Has 2425 Blast hits to 2142 proteins in 283 species: Archae - 50; Bacteria - 240; Metazoa - 929; Fungi - 179; Plants - 47; Viruses - 23; Other Eukaryotes - 957 (source: NCBI BLink).  protein_id AT1G13330.1p  transcript_id AT1G13330.1  protein_id AT1G13330.1p  transcript_id AT1G13330.1  
At1g13340	chr1:004570582	0.0	C/4570582-4571043,4570350-4570469,4569622-4570269	AT1G13340.1  CDS  gene_syn T6J4.22, T6J4_22  go_process response to oxidative stress|GO:0006979|18614705|IMP  product unknown protein  note unknown protein; INVOLVED IN: response to oxidative stress; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34220.2); Has 416 Blast hits to 416 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 148; Fungi - 88; Plants - 145; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT1G13340.1p  transcript_id AT1G13340.1  protein_id AT1G13340.1p  transcript_id AT1G13340.1  
At1g13350	chr1:004576239	0.0	C/4576239-4576547,4575408-4575835,4575145-4575305,4574535-4574773,4574380-4574448,4573960-4574044,4573631-4573787,4573225-4573516,4573032-4573146,4572502-4572932	AT1G13350.1  CDS  gene_syn T6J4.10, T6J4_10  go_component nucleus|GO:0005634|14617066|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component nucleus|GO:0005634|15469496|IDA  go_component cytoplasm|GO:0005737|15469496|IDA  go_function protein kinase activity|GO:0004672||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G53640.1); Has 80312 Blast hits to 71745 proteins in 1717 species: Archae - 65; Bacteria - 5105; Metazoa - 38133; Fungi - 9588; Plants - 8768; Viruses - 394; Other Eukaryotes - 18259 (source: NCBI BLink).  protein_id AT1G13350.1p  transcript_id AT1G13350.1  protein_id AT1G13350.1p  transcript_id AT1G13350.1  
At1g13360	chr1:004577229	0.0	C/4577229-4577813	AT1G13360.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1); Has 35 Blast hits to 35 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13360.1p  transcript_id AT1G13360.1  protein_id AT1G13360.1p  transcript_id AT1G13360.1  
At1g13370	chr1:004588374	0.0	C/4588374-4588522,4588202-4588292,4587926-4588096	AT1G13370.1  CDS  gene_syn T6J4.12, T6J4_12  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product histone H3, putative  note histone H3, putative; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, chloroplast, nucleosome; EXPRESSED IN: flower, inflorescence, root, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H3 (TAIR:AT5G10980.1); Has 10206 Blast hits to 10203 proteins in 5279 species: Archae - 0; Bacteria - 0; Metazoa - 7337; Fungi - 1299; Plants - 998; Viruses - 0; Other Eukaryotes - 572 (source: NCBI BLink).  protein_id AT1G13370.1p  transcript_id AT1G13370.1  protein_id AT1G13370.1p  transcript_id AT1G13370.1  
At1g13380	chr1:004590261	0.0	C/4590261-4590362,4589663-4589868,4589218-4589476	AT1G13380.1  CDS  gene_syn T6J4.13, T6J4_13  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27435.1); Has 150 Blast hits to 150 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13380.1p  transcript_id AT1G13380.1  protein_id AT1G13380.1p  transcript_id AT1G13380.1  
At1g13390	chr1:004593395	0.0	C/4593395-4593549,4593245-4593308,4592829-4593140	AT1G13390.1  CDS  gene_syn T6J4.14, T6J4_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68490.1); Has 53 Blast hits to 53 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13390.1p  transcript_id AT1G13390.1  protein_id AT1G13390.1p  transcript_id AT1G13390.1  
At1g13390	chr1:004593395	0.0	C/4593395-4593549,4593245-4593308,4592829-4593140	AT1G13390.2  CDS  gene_syn T6J4.14, T6J4_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68490.1); Has 53 Blast hits to 53 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13390.2p  transcript_id AT1G13390.2  protein_id AT1G13390.2p  transcript_id AT1G13390.2  
At1g13400	chr1:004597784	0.0	W/4597784-4597785,4597890-4597996,4598235-4598348,4598426-4598513,4598599-4598911	AT1G13400.1  CDS  gene_syn JAGGED-LIKE, JGL, NUB, NUBBIN, T6J4.23, T6J4_23  gene NUB  function Along with JAG, it is involved in stamen and carpel development. Expression is limited to the adaxial side of lateral organs. Activated by AGAMOUS in a cal-1, ap1-1 background.  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process carpel development|GO:0048440|16554365|IGI  go_process stamen development|GO:0048443|16554365|IGI  go_process anther development|GO:0048653|16554365|IGI  go_function nucleic acid binding|GO:0003676||ISS  go_function zinc ion binding|GO:0008270||ISS  product NUB (NUBBIN); nucleic acid binding / zinc ion binding  note NUBBIN (NUB); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: stamen development, anther development, carpel development; LOCATED IN: intracellular; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: JAG (JAGGED); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT1G68480.1); Has 258 Blast hits to 258 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 254; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G13400.1p  transcript_id AT1G13400.1  protein_id AT1G13400.1p  transcript_id AT1G13400.1  
At1g13410	chr1:004601526	0.0	W/4601526-4601649,4601874-4603174	AT1G13410.1  CDS  gene_syn T6J4.15, T6J4_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G02750.1); Has 13539 Blast hits to 4793 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 35; Plants - 13298; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink).  protein_id AT1G13410.1p  transcript_id AT1G13410.1  protein_id AT1G13410.1p  transcript_id AT1G13410.1  
At1g13420	chr1:004604871	0.0	W/4604871-4605866	AT1G13420.1  CDS  gene_syn ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, ATST4B, ST4B, SULFOTRANSFERASE 4B, T6J4.16, T6J4_16  gene ST4B  function Encodes a sulfotransferase. Unlike the related ST4A protein (At2g14920), in vitro experiements show that this enzyme does not act brassinosteroids. ST4B is expressed in the roots and transcript levels rise in response to cytokinin treatment.  go_component cellular_component|GO:0005575||ND  go_process response to cytokinin stimulus|GO:0009735|17039368|IEP  go_function sulfotransferase activity|GO:0008146||ISS  go_function brassinosteroid sulfotransferase activity|GO:0080118|17039368|IDA  product ST4B (SULFOTRANSFERASE 4B); brassinosteroid sulfotransferase/ sulfotransferase  note SULFOTRANSFERASE 4B (ST4B); FUNCTIONS IN: sulfotransferase activity, brassinosteroid sulfotransferase activity; INVOLVED IN: response to cytokinin stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Sulfotransferase (InterPro:IPR000863); BEST Arabidopsis thaliana protein match is: ST4C (SULFOTRANSFERASE 4C); brassinosteroid sulfotransferase/ sulfotransferase (TAIR:AT1G13430.1); Has 2237 Blast hits to 2200 proteins in 149 species: Archae - 0; Bacteria - 158; Metazoa - 1449; Fungi - 1; Plants - 310; Viruses - 0; Other Eukaryotes - 319 (source: NCBI BLink).  protein_id AT1G13420.1p  transcript_id AT1G13420.1  protein_id AT1G13420.1p  transcript_id AT1G13420.1  
At1g13430	chr1:004606530	0.0	W/4606530-4607585	AT1G13430.1  CDS  gene_syn ARABIDOPSIS THALIANA SULFOTRANSFERASE 4C, ATST4C, ST4C, SULFOTRANSFERASE 4C, T6J4.24, T6J4_24  gene ST4C  function Encodes a sulfotransferase. Unlike the related ST4A protein (At2g14920), in vitro experiements show that this enzyme does not act brassinosteroids. ST4C is expressed in the roots and transcript levels rise in response to cytokinin treatment.  go_component cellular_component|GO:0005575||ND  go_process response to cytokinin stimulus|GO:0009735|17039368|IEP  go_function sulfotransferase activity|GO:0008146||ISS  go_function brassinosteroid sulfotransferase activity|GO:0080118|17039368|IDA  product ST4C (SULFOTRANSFERASE 4C); brassinosteroid sulfotransferase/ sulfotransferase  note SULFOTRANSFERASE 4C (ST4C); FUNCTIONS IN: sulfotransferase activity, brassinosteroid sulfotransferase activity; INVOLVED IN: response to cytokinin stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Sulfotransferase (InterPro:IPR000863); BEST Arabidopsis thaliana protein match is: ST4A (SULFOTRANSFERASE 4A); brassinosteroid sulfotransferase/ sulfotransferase (TAIR:AT2G14920.1); Has 2134 Blast hits to 2101 proteins in 132 species: Archae - 0; Bacteria - 109; Metazoa - 1420; Fungi - 1; Plants - 308; Viruses - 0; Other Eukaryotes - 296 (source: NCBI BLink).  protein_id AT1G13430.1p  transcript_id AT1G13430.1  protein_id AT1G13430.1p  transcript_id AT1G13430.1  
At1g13440	chr1:004610491	0.0	C/4610491-4610494,4610368-4610397,4610176-4610276,4609860-4609975,4609669-4609768,4609436-4609582,4609275-4609335,4609092-4609189,4608863-4609005,4608691-4608774,4608465-4608597	AT1G13440.1  CDS  gene_syn GAPC-2, GAPC2, GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2, T6J4.17, T6J4_17  gene GAPC2  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleus|GO:0005634|14617066|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process response to cadmium ion|GO:0046686|17075075|IEP  go_function catalytic activity|GO:0003824||IEA  go_function glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity|GO:0004365||IEA  go_function binding|GO:0005488||IEA  go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|12953116|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component cytosol|GO:0005829|15533878|TAS  go_process gluconeogenesis|GO:0006094|15533878|TAS  go_process glycolysis|GO:0006096|15533878|TAS  go_process glycolysis|GO:0006096||ISS  go_process response to oxidative stress|GO:0006979|12492832|IDA  go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943||ISS  product GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2); NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase  note GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2 (GAPC2); FUNCTIONS IN: NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, binding, catalytic activity, glyceraldehyde-3-phosphate dehydrogenase activity; INVOLVED IN: response to oxidative stress, response to cadmium ion, gluconeogenesis, defense response to bacterium, glycolysis; LOCATED IN: in 8 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase (InterPro:IPR000173), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1); glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase (TAIR:AT3G04120.1); Has 17650 Blast hits to 17639 proteins in 4048 species: Archae - 58; Bacteria - 6630; Metazoa - 1441; Fungi - 1939; Plants - 2582; Viruses - 0; Other Eukaryotes - 5000 (source: NCBI BLink).  protein_id AT1G13440.1p  transcript_id AT1G13440.1  protein_id AT1G13440.1p  transcript_id AT1G13440.1  
At1g13440	chr1:004610491	0.0	C/4610491-4610494,4610368-4610397,4610176-4610276,4609860-4609975,4609669-4609768,4609506-4609582,4609275-4609321,4609092-4609189,4608863-4609005,4608691-4608774,4608465-4608597	AT1G13440.2  CDS  gene_syn GAPC-2, GAPC2, GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2, T6J4.17, T6J4_17  gene GAPC2  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_process response to cadmium ion|GO:0046686|17075075|IEP  go_function catalytic activity|GO:0003824||IEA  go_function glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity|GO:0004365||IEA  go_function binding|GO:0005488||IEA  go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|12953116|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component cytosol|GO:0005829|15533878|TAS  go_process gluconeogenesis|GO:0006094|15533878|TAS  go_process glycolysis|GO:0006096|15533878|TAS  go_process glycolysis|GO:0006096||ISS  go_process response to oxidative stress|GO:0006979|12492832|IDA  go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943||ISS  product GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2); NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase  note GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2 (GAPC2); FUNCTIONS IN: NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, binding, catalytic activity, glyceraldehyde-3-phosphate dehydrogenase activity; INVOLVED IN: response to oxidative stress, response to cadmium ion, gluconeogenesis, defense response to bacterium, glycolysis; LOCATED IN: cytosol, mitochondrion, chloroplast, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase (InterPro:IPR000173), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1); glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase (TAIR:AT3G04120.1); Has 17531 Blast hits to 17522 proteins in 4026 species: Archae - 21; Bacteria - 6600; Metazoa - 1428; Fungi - 1937; Plants - 2582; Viruses - 0; Other Eukaryotes - 4963 (source: NCBI BLink).  protein_id AT1G13440.2p  transcript_id AT1G13440.2  protein_id AT1G13440.2p  transcript_id AT1G13440.2  
At1g13448	chr1:004612243	0.0	W/4612243-4612929	AT1G13448.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G13450  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G13448.1  
At1g13450	chr1:004614500	0.0	C/4614500-4615115,4614198-4614236,4613286-4613516,4612999-4613198	AT1G13450.2  CDS  gene_syn T6J4.18, T6J4_18  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product DNA binding protein GT-1  note DNA binding protein GT-1; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: DNA-binding protein GT-1-related (TAIR:AT3G25990.1); Has 351 Blast hits to 304 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 99; Fungi - 2; Plants - 248; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G13450.2p  transcript_id AT1G13450.2  protein_id AT1G13450.2p  transcript_id AT1G13450.2  
At1g13450	chr1:004614500	0.0	C/4614500-4615115,4614198-4614236,4613708-4613889	AT1G13450.3  CDS  gene_syn T6J4.18, T6J4_18  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product DNA binding protein GT-1  note DNA binding protein GT-1; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: DNA-binding protein GT-1-related (TAIR:AT3G25990.1); Has 339 Blast hits to 292 proteins in 45 species: Archae - 0; Bacteria - 1; Metazoa - 88; Fungi - 3; Plants - 247; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13450.3p  transcript_id AT1G13450.3  protein_id AT1G13450.3p  transcript_id AT1G13450.3  
At1g13450	chr1:004614500	0.0	C/4614500-4615115,4614198-4614236,4613755-4613889,4613286-4613516,4612999-4613198	AT1G13450.1  CDS  gene_syn T6J4.18, T6J4_18  go_component nucleus|GO:0005634|14617066|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product DNA binding protein GT-1  note DNA binding protein GT-1; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: DNA-binding protein GT-1-related (TAIR:AT3G25990.1); Has 338 Blast hits to 291 proteins in 46 species: Archae - 0; Bacteria - 1; Metazoa - 88; Fungi - 2; Plants - 245; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G13450.1p  transcript_id AT1G13450.1  protein_id AT1G13450.1p  transcript_id AT1G13450.1  
At1g13460	chr1:004616504	0.0	W/4616504-4617667,4617866-4618180	AT1G13460.1  CDS  gene_syn T6J4.19, T6J4_19  go_component protein phosphatase type 2A complex|GO:0000159||IEA  go_component chloroplast|GO:0009507||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein phosphatase type 2A regulator activity|GO:0008601||IEA  go_component protein phosphatase type 2A complex|GO:0000159||ISS  go_process signal transduction|GO:0007165||ISS  go_function protein phosphatase type 2A regulator activity|GO:0008601||ISS  product serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B , putative  note serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B , putative; FUNCTIONS IN: protein phosphatase type 2A regulator activity; INVOLVED IN: signal transduction; LOCATED IN: chloroplast, protein phosphatase type 2A complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2A, regulatory B subunit, B56 (InterPro:IPR002554); BEST Arabidopsis thaliana protein match is: serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B , putative (TAIR:AT3G26020.2); Has 867 Blast hits to 858 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 493; Fungi - 99; Plants - 156; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT1G13460.1p  transcript_id AT1G13460.1  protein_id AT1G13460.1p  transcript_id AT1G13460.1  
At1g13460	chr1:004616504	0.0	W/4616504-4617667,4617866-4618180	AT1G13460.2  CDS  gene_syn T6J4.19, T6J4_19  go_component protein phosphatase type 2A complex|GO:0000159||IEA  go_component chloroplast|GO:0009507||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein phosphatase type 2A regulator activity|GO:0008601||IEA  go_component protein phosphatase type 2A complex|GO:0000159||ISS  go_process signal transduction|GO:0007165||ISS  go_function protein phosphatase type 2A regulator activity|GO:0008601||ISS  product serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B , putative  note serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B , putative; FUNCTIONS IN: protein phosphatase type 2A regulator activity; INVOLVED IN: signal transduction; LOCATED IN: chloroplast, protein phosphatase type 2A complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2A, regulatory B subunit, B56 (InterPro:IPR002554); BEST Arabidopsis thaliana protein match is: serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B , putative (TAIR:AT3G26020.2); Has 867 Blast hits to 858 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 493; Fungi - 99; Plants - 156; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT1G13460.2p  transcript_id AT1G13460.2  protein_id AT1G13460.2p  transcript_id AT1G13460.2  
At1g13470	chr1:004621235	0.0	C/4621235-4621542,4620322-4621153	AT1G13470.1  CDS  gene_syn T6J4.20, T6J4_20  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13520.1); Has 56 Blast hits to 53 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13470.1p  transcript_id AT1G13470.1  protein_id AT1G13470.1p  transcript_id AT1G13470.1  
At1g13480	chr1:004623724	0.0	C/4623724-4624043,4622783-4623626	AT1G13480.1  CDS  gene_syn T6J4.21, T6J4_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13520.1); Has 67 Blast hits to 63 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13480.1p  transcript_id AT1G13480.1  protein_id AT1G13480.1p  transcript_id AT1G13480.1  
At1g13485	chr1:004624171	0.0	C/4624171-4624344	AT1G13485.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT1G13485.1p  transcript_id AT1G13485.1  protein_id AT1G13485.1p  transcript_id AT1G13485.1  
At1g13490	chr1:004625857	0.0	C/4625857-4626064,4625664-4625763,4624715-4625498	AT1G13490.1  CDS  gene_syn F13B4.1, F13B4_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13500.1); Has 57 Blast hits to 53 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13490.1p  transcript_id AT1G13490.1  protein_id AT1G13490.1p  transcript_id AT1G13490.1  
At1g13500	chr1:004628956	0.0	C/4628956-4629169,4628763-4628862,4627789-4628635	AT1G13500.1  CDS  gene_syn F13B4.2, F13B4_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13530.1); Has 57 Blast hits to 53 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13500.1p  transcript_id AT1G13500.1  protein_id AT1G13500.1p  transcript_id AT1G13500.1  
At1g13510	chr1:004630368	0.0	C/4630368-4630687,4629459-4630281	AT1G13510.1  CDS  gene_syn F13B4.15, F13B4_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13540.1); Has 57 Blast hits to 53 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13510.1p  transcript_id AT1G13510.1  protein_id AT1G13510.1p  transcript_id AT1G13510.1  
At1g13520	chr1:004632904	0.0	C/4632904-4633223,4631857-4632700	AT1G13520.1  CDS  gene_syn F13B4.3, F13B4_3  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13480.1); Has 56 Blast hits to 53 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13520.1p  transcript_id AT1G13520.1  protein_id AT1G13520.1p  transcript_id AT1G13520.1  
At1g13530	chr1:004634922	0.0	C/4634922-4635129,4634707-4634818,4633740-4634577	AT1G13530.1  CDS  gene_syn F13B4.17, F13B4_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13500.1); Has 57 Blast hits to 53 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13530.1p  transcript_id AT1G13530.1  protein_id AT1G13530.1p  transcript_id AT1G13530.1  
At1g13540	chr1:004636386	0.0	C/4636386-4636708,4635474-4636296	AT1G13540.1  CDS  gene_syn F13B4.29, F13B4_29  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13510.1); Has 56 Blast hits to 53 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13540.1p  transcript_id AT1G13540.1  protein_id AT1G13540.1p  transcript_id AT1G13540.1  
At1g13550	chr1:004637999	0.0	C/4637999-4638315,4637072-4637921	AT1G13550.1  CDS  gene_syn F13B4.4, F13B4_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13480.1); Has 56 Blast hits to 53 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13550.1p  transcript_id AT1G13550.1  protein_id AT1G13550.1p  transcript_id AT1G13550.1  
At1g13560	chr1:004641546	0.0	C/4641546-4641563,4641276-4641326,4641069-4641146,4640890-4640965,4640781-4640803,4640594-4640694,4640421-4640515,4640223-4640291,4640046-4640115,4639867-4639930,4639746-4639786,4639570-4639654,4639411-4639473,4639257-4639315,4639120-4639172,4638941-4639013,4638834-4638855	AT1G13560.2  CDS  gene_syn AAPT1, AMINOALCOHOLPHOSPHOTRANSFERASE, AMINOALCOHOLPHOSPHOTRANSFERASE 1, F13B4.5, F13B4_5  gene AAPT1  function Encodes aminoalcoholphosphotransferase AAPT1.  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process phospholipid biosynthetic process|GO:0008654||IEA  go_function phosphotransferase activity, for other substituted phosphate groups|GO:0016780||IEA  go_process phospholipid biosynthetic process|GO:0008654||ISS  go_function phosphatidyltransferase activity|GO:0030572||ISS  product AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1); phosphatidyltransferase/ phosphotransferase, for other substituted phosphate groups  note AMINOALCOHOLPHOSPHOTRANSFERASE 1 (AAPT1); FUNCTIONS IN: phosphatidyltransferase activity, phosphotransferase activity, for other substituted phosphate groups; INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CDP-alcohol phosphatidyltransferase (InterPro:IPR000462); BEST Arabidopsis thaliana protein match is: AAPT2 (AMINOALCOHOLPHOSPHOTRANSFERASE); phosphatidyltransferase/ phosphotransferase, for other substituted phosphate groups (TAIR:AT3G25585.4); Has 686 Blast hits to 680 proteins in 162 species: Archae - 0; Bacteria - 8; Metazoa - 340; Fungi - 146; Plants - 49; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).  protein_id AT1G13560.2p  transcript_id AT1G13560.2  protein_id AT1G13560.2p  transcript_id AT1G13560.2  
At1g13560	chr1:004641555	0.0	C/4641555-4641691,4641419-4641428,4641276-4641326,4641069-4641146,4640890-4640965,4640781-4640803,4640594-4640694,4640421-4640515,4640223-4640291,4640046-4640115,4639867-4639930,4639746-4639786,4639570-4639654,4639411-4639473,4639257-4639315,4639120-4639172,4638941-4639013,4638834-4638855	AT1G13560.1  CDS  gene_syn AAPT1, AMINOALCOHOLPHOSPHOTRANSFERASE, AMINOALCOHOLPHOSPHOTRANSFERASE 1, F13B4.5, F13B4_5  gene AAPT1  function Encodes aminoalcoholphosphotransferase AAPT1.  go_component membrane|GO:0016020||IEA  go_process phospholipid biosynthetic process|GO:0008654||IEA  go_function phosphotransferase activity, for other substituted phosphate groups|GO:0016780||IEA  go_process phospholipid biosynthetic process|GO:0008654||ISS  go_function phosphatidyltransferase activity|GO:0030572||ISS  product AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1); phosphatidyltransferase/ phosphotransferase, for other substituted phosphate groups  note AMINOALCOHOLPHOSPHOTRANSFERASE 1 (AAPT1); FUNCTIONS IN: phosphatidyltransferase activity, phosphotransferase activity, for other substituted phosphate groups; INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Choline/ethanolaminephosphotransferase (InterPro:IPR014472), CDP-alcohol phosphatidyltransferase (InterPro:IPR000462); BEST Arabidopsis thaliana protein match is: AAPT2 (AMINOALCOHOLPHOSPHOTRANSFERASE); phosphatidyltransferase/ phosphotransferase, for other substituted phosphate groups (TAIR:AT3G25585.4); Has 737 Blast hits to 729 proteins in 170 species: Archae - 4; Bacteria - 20; Metazoa - 344; Fungi - 148; Plants - 49; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink).  protein_id AT1G13560.1p  transcript_id AT1G13560.1  protein_id AT1G13560.1p  transcript_id AT1G13560.1  
At1g13570	chr1:004643130	0.0	C/4643130-4643930,4642900-4643058,4642528-4642818	AT1G13570.1  CDS  gene_syn F13B4.6, F13B4_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G56370.2); Has 1284 Blast hits to 1263 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1284; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13570.1p  transcript_id AT1G13570.1  protein_id AT1G13570.1p  transcript_id AT1G13570.1  
At1g13580	chr1:004646628	0.0	C/4646628-4646765,4645926-4646155,4645681-4645836,4645380-4645575	AT1G13580.1  CDS  gene_syn F13B4.7, F13B4_7, LAG1 LONGEVITY ASSURANCE HOMOLOG 3, LAG13  gene LAG13  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component endoplasmic reticulum|GO:0005783|18643979|IDA  go_function molecular_function|GO:0003674||ND  product LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3)  note LAG1 LONGEVITY ASSURANCE HOMOLOG 3 (LAG13); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: LAG1 (TAIR:AT3G25540.1); Has 919 Blast hits to 919 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 499; Fungi - 203; Plants - 93; Viruses - 2; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT1G13580.1p  transcript_id AT1G13580.1  protein_id AT1G13580.1p  transcript_id AT1G13580.1  
At1g13580	chr1:004646628	0.0	C/4646628-4646765,4645926-4646155,4645681-4645836,4645390-4645575,4645123-4645307,4645006-4645037	AT1G13580.2  CDS  gene_syn F13B4.7, F13B4_7, LAG1 LONGEVITY ASSURANCE HOMOLOG 3, LAG13  gene LAG13  go_component endoplasmic reticulum|GO:0005783|18643979|IDA  go_function molecular_function|GO:0003674||ND  product LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3)  note LAG1 LONGEVITY ASSURANCE HOMOLOG 3 (LAG13); FUNCTIONS IN: molecular_function unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Longevity assurance, LAG1/LAC1 (InterPro:IPR016439), TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: LAG1 (TAIR:AT3G25540.1); Has 931 Blast hits to 931 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 500; Fungi - 203; Plants - 101; Viruses - 2; Other Eukaryotes - 125 (source: NCBI BLink).  protein_id AT1G13580.2p  transcript_id AT1G13580.2  protein_id AT1G13580.2p  transcript_id AT1G13580.2  
At1g13590	chr1:004647979	0.0	W/4647979-4648104,4648475-4648612	AT1G13590.1  CDS  gene_syn ATPSK1, F21F23.2, PHYTOSULFOKINE 1 PRECURSOR  gene ATPSK1  function Encodes a phytosulfokine-alpha (PSK) precursor, a unique plant peptide growth factor first described in Asparagus.  go_function growth factor activity|GO:0008083||IEA  go_component extracellular matrix|GO:0031012|11706167|ISS  go_process cell growth|GO:0016049|11706167|ISS  product ATPSK1 (PHYTOSULFOKINE 1 PRECURSOR); growth factor  note PHYTOSULFOKINE 1 PRECURSOR (ATPSK1); FUNCTIONS IN: growth factor activity; INVOLVED IN: cell growth; LOCATED IN: extracellular matrix; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Phytosulfokine (InterPro:IPR009438); Has 49 Blast hits to 49 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13590.1p  transcript_id AT1G13590.1  protein_id AT1G13590.1p  transcript_id AT1G13590.1  
At1g13600	chr1:004650787	0.0	C/4650787-4651377	AT1G13600.1  CDS  gene_syn Arabidopsis thaliana basic leucine-zipper 58, AtbZIP58, F21F23.3  gene AtbZIP58  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function protein homodimerization activity|GO:0042803|16709202|IPI  go_function protein heterodimerization activity|GO:0046982|16709202|IPI  product AtbZIP58 (Arabidopsis thaliana basic leucine-zipper 58); DNA binding / protein heterodimerization/ protein homodimerization/ transcription factor  note Arabidopsis thaliana basic leucine-zipper 58 (AtbZIP58); FUNCTIONS IN: transcription factor activity, protein heterodimerization activity, protein homodimerization activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: AtbZIP48 (Arabidopsis thaliana basic leucine-zipper 48); DNA binding / transcription factor (TAIR:AT2G04038.1); Has 1363 Blast hits to 1355 proteins in 113 species: Archae - 0; Bacteria - 6; Metazoa - 50; Fungi - 35; Plants - 1186; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT1G13600.1p  transcript_id AT1G13600.1  protein_id AT1G13600.1p  transcript_id AT1G13600.1  
At1g13605	chr1:004658603	0.0	W/4658603-4658651,4658748-4659010	AT1G13605.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13605.1p  transcript_id AT1G13605.1  protein_id AT1G13605.1p  transcript_id AT1G13605.1  
At1g13607	chr1:004660778	0.0	W/4660778-4660838,4660941-4661098	AT1G13607.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13607.1p  transcript_id AT1G13607.1  protein_id AT1G13607.1p  transcript_id AT1G13607.1  
At1g13608	chr1:004661682	0.0	W/4661682-4661726,4661838-4662029	AT1G13608.1  CDS  function Encodes a defensin-like (DEFL) family protein.  product unknown protein  note BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13609.1); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13608.1p  transcript_id AT1G13608.1  protein_id AT1G13608.1p  transcript_id AT1G13608.1  
At1g13609	chr1:004662818	0.0	W/4662818-4662878,4662971-4663146	AT1G13609.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13609.1p  transcript_id AT1G13609.1  protein_id AT1G13609.1p  transcript_id AT1G13609.1  
At1g13610	chr1:004665665	0.0	C/4665665-4665680,4665276-4665312,4664822-4665053,4664673-4664720,4664203-4664573,4664008-4664080	AT1G13610.2  CDS  gene_syn F21F23.4  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: cotyledon, hypocotyl, root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G30380.2); Has 2019 Blast hits to 2016 proteins in 366 species: Archae - 0; Bacteria - 491; Metazoa - 374; Fungi - 64; Plants - 123; Viruses - 3; Other Eukaryotes - 964 (source: NCBI BLink).  protein_id AT1G13610.2p  transcript_id AT1G13610.2  protein_id AT1G13610.2p  transcript_id AT1G13610.2  
At1g13610	chr1:004665665	0.0	C/4665665-4665975,4665276-4665312,4664822-4665058,4664673-4664720,4664203-4664573,4664008-4664080	AT1G13610.1  CDS  gene_syn F21F23.4  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: cotyledon, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G30380.2); Has 3358 Blast hits to 3354 proteins in 579 species: Archae - 6; Bacteria - 974; Metazoa - 587; Fungi - 165; Plants - 174; Viruses - 11; Other Eukaryotes - 1441 (source: NCBI BLink).  protein_id AT1G13610.1p  transcript_id AT1G13610.1  protein_id AT1G13610.1p  transcript_id AT1G13610.1  
At1g13620	chr1:004668494	0.0	W/4668494-4668572,4668812-4668858,4669022-4669225	AT1G13620.1  CDS  gene_syn F21F23.5  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04025.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13620.1p  transcript_id AT1G13620.1  protein_id AT1G13620.1p  transcript_id AT1G13620.1  
At1g13630	chr1:004672480	0.0	C/4672480-4672826,4670443-4672315,4670223-4670354,4669784-4669852	AT1G13630.1  CDS  gene_syn F21F23.6, F21F23_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G22470.1); Has 23967 Blast hits to 5877 proteins in 185 species: Archae - 3; Bacteria - 26; Metazoa - 708; Fungi - 595; Plants - 21695; Viruses - 0; Other Eukaryotes - 940 (source: NCBI BLink).  protein_id AT1G13630.1p  transcript_id AT1G13630.1  protein_id AT1G13630.1p  transcript_id AT1G13630.1  
At1g13635	chr1:004674248	0.0	W/4674248-4674620,4674831-4674888,4675072-4675155,4675241-4675382,4675506-4675784	AT1G13635.1  CDS  go_process DNA repair|GO:0006281||IEA  go_process base-excision repair|GO:0006284||IEA  go_function catalytic activity|GO:0003824||IEA  go_function DNA-3-methyladenine glycosylase I activity|GO:0008725||IEA  go_component cellular_component|GO:0005575||ND  go_function catalytic activity|GO:0003824||ISS  product methyladenine glycosylase family protein  note methyladenine glycosylase family protein; FUNCTIONS IN: DNA-3-methyladenine glycosylase I activity, catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Methyladenine glycosylase (InterPro:IPR005019); BEST Arabidopsis thaliana protein match is: methyladenine glycosylase family protein (TAIR:AT5G57970.2); Has 1978 Blast hits to 1978 proteins in 801 species: Archae - 7; Bacteria - 1558; Metazoa - 4; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 325 (source: NCBI BLink).  protein_id AT1G13635.1p  transcript_id AT1G13635.1  protein_id AT1G13635.1p  transcript_id AT1G13635.1  
At1g13640	chr1:004677276	0.0	C/4677276-4679144	AT1G13640.1  CDS  gene_syn F21F23.8, F21F23_8  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_component cellular_component|GO:0005575||ND  go_function inositol or phosphatidylinositol kinase activity|GO:0004428||ISS  product phosphatidylinositol 3- and 4-kinase family protein  note phosphatidylinositol 3- and 4-kinase family protein; FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3- and 4-kinase, catalytic (InterPro:IPR000403); BEST Arabidopsis thaliana protein match is: phosphatidylinositol 3- and 4-kinase family protein (TAIR:AT2G03890.1); Has 401 Blast hits to 395 proteins in 120 species: Archae - 0; Bacteria - 2; Metazoa - 139; Fungi - 53; Plants - 136; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT1G13640.1p  transcript_id AT1G13640.1  protein_id AT1G13640.1p  transcript_id AT1G13640.1  
At1g13650	chr1:004681883	0.0	C/4681883-4681903,4681011-4681492,4680571-4680928	AT1G13650.1  CDS  gene_syn F21F23.9, F21F23_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: 18S pre-ribosomal assembly protein gar2-related (TAIR:AT2G03810.4); Has 3725 Blast hits to 1574 proteins in 203 species: Archae - 2; Bacteria - 168; Metazoa - 816; Fungi - 289; Plants - 39; Viruses - 14; Other Eukaryotes - 2397 (source: NCBI BLink).  protein_id AT1G13650.1p  transcript_id AT1G13650.1  protein_id AT1G13650.1p  transcript_id AT1G13650.1  
At1g13650	chr1:004681883	0.0	C/4681883-4681903,4681011-4681492,4680571-4680928	AT1G13650.2  CDS  gene_syn F21F23.9, F21F23_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: 18S pre-ribosomal assembly protein gar2-related (TAIR:AT2G03810.4); Has 3725 Blast hits to 1574 proteins in 203 species: Archae - 2; Bacteria - 168; Metazoa - 816; Fungi - 289; Plants - 39; Viruses - 14; Other Eukaryotes - 2397 (source: NCBI BLink).  protein_id AT1G13650.2p  transcript_id AT1G13650.2  protein_id AT1G13650.2p  transcript_id AT1G13650.2  
At1g13660	chr1:004683171	0.0	W/4683171-4685640	AT1G13660.1  mRNA_TE_gene  pseudo  gene_syn F21F23.10  note Transposable element gene, Mutator-like transposase family, has a 2.6e-36 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At1g13670	chr1:004688201	0.0	W/4688201-4688878	AT1G13670.1  CDS  gene_syn F21F23.11, F21F23_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, inflorescence meristem, hypocotyl, flower, root; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 10 Blast hits to 10 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13670.1p  transcript_id AT1G13670.1  protein_id AT1G13670.1p  transcript_id AT1G13670.1  
At1g13680	chr1:004690409	0.0	W/4690409-4690501,4690703-4690819,4691247-4691363,4691451-4691549,4691928-4692231,4692319-4692542,4692616-4692702	AT1G13680.1  CDS  gene_syn F21F23.12, F21F23_12  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_function phospholipase C activity|GO:0004629||IEA  go_function phosphoric diester hydrolase activity|GO:0008081||IEA  product phospholipase C/ phosphoric diester hydrolase  note phospholipase C/ phosphoric diester hydrolase; FUNCTIONS IN: phospholipase C activity, phosphoric diester hydrolase activity; INVOLVED IN: intracellular signaling cascade, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific , X region (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946); BEST Arabidopsis thaliana protein match is: phospholipase C/ phosphoric diester hydrolase (TAIR:AT4G36945.1); Has 271 Blast hits to 269 proteins in 57 species: Archae - 0; Bacteria - 34; Metazoa - 6; Fungi - 109; Plants - 78; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT1G13680.1p  transcript_id AT1G13680.1  protein_id AT1G13680.1p  transcript_id AT1G13680.1  
At1g13690	chr1:004693380	0.0	W/4693380-4693695,4693962-4694179	AT1G13690.1  CDS  gene_syn ATE1, ATPASE E1, F21F23.13, F21F23_13, GRPE HOMOLOG  gene ATE1  function AtE1 - stimulates the ATPase activity of DnaK/DnaJ  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product ATE1; nucleic acid binding / nucleotide binding  note ATE1; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: GR-RBP3 (glycine-rich RNA-binding protein 3); ATP binding / RNA binding (TAIR:AT5G61030.1); Has 10977 Blast hits to 9311 proteins in 509 species: Archae - 8; Bacteria - 842; Metazoa - 6064; Fungi - 1223; Plants - 1766; Viruses - 0; Other Eukaryotes - 1074 (source: NCBI BLink).  protein_id AT1G13690.1p  transcript_id AT1G13690.1  protein_id AT1G13690.1p  transcript_id AT1G13690.1  
At1g13700	chr1:004695428	0.0	C/4695428-4695600,4695209-4695344,4694475-4694972	AT1G13700.1  CDS  gene_syn F21F23.14, F21F23_14  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process pentose-phosphate shunt|GO:0006098||IEA  go_function 6-phosphogluconolactonase activity|GO:0017057||IEA  go_component cellular_component|GO:0005575||ND  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function catalytic activity|GO:0003824||ISS  product glucosamine/galactosamine-6-phosphate isomerase family protein  note glucosamine/galactosamine-6-phosphate isomerase family protein; FUNCTIONS IN: 6-phosphogluconolactonase activity, catalytic activity; INVOLVED IN: pentose-phosphate shunt, carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glucosamine/galactosamine-6-phosphate isomerase (InterPro:IPR006148), 6-phosphogluconolactonase (InterPro:IPR005900); BEST Arabidopsis thaliana protein match is: emb2024 (embryo defective 2024); 6-phosphogluconolactonase/ catalytic (TAIR:AT5G24400.1); Has 2364 Blast hits to 2364 proteins in 829 species: Archae - 0; Bacteria - 1366; Metazoa - 148; Fungi - 158; Plants - 85; Viruses - 0; Other Eukaryotes - 607 (source: NCBI BLink).  protein_id AT1G13700.1p  transcript_id AT1G13700.1  protein_id AT1G13700.1p  transcript_id AT1G13700.1  
At1g13710	chr1:004703654	0.0	C/4703654-4704592,4702932-4703546	AT1G13710.1  CDS  gene_syn CYP78A5, F21F23.15, F21F23_15  gene CYP78A5  function member of CYP78A  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP78A5; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP78A5; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP78A10; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G74110.1); Has 22175 Blast hits to 22105 proteins in 1158 species: Archae - 21; Bacteria - 1693; Metazoa - 9981; Fungi - 4229; Plants - 5511; Viruses - 3; Other Eukaryotes - 737 (source: NCBI BLink).  protein_id AT1G13710.1p  transcript_id AT1G13710.1  protein_id AT1G13710.1p  transcript_id AT1G13710.1  
At1g13720	chr1:004709635	0.0	W/4709635-4709706	AT1G13720.1  tRNA  gene_syn 61268.TRNA-THR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Thr (anticodon: CGT)  transcript_id AT1G13720.1  
At1g13730	chr1:004710519	0.0	W/4710519-4710698,4710801-4711283,4711368-4711524,4711618-4711739,4711826-4711891,4711978-4712038,4712115-4712332	AT1G13730.1  CDS  gene_syn F21F23.16, F21F23_16  go_component intracellular|GO:0005622||IEA  go_process transport|GO:0006810||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process nucleocytoplasmic transport|GO:0006913||ISS  go_function RNA binding|GO:0003723||ISS  product nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein  note nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: transport, nucleocytoplasmic transport; LOCATED IN: intracellular; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT2G03640.2); Has 3242 Blast hits to 3136 proteins in 308 species: Archae - 0; Bacteria - 191; Metazoa - 1766; Fungi - 539; Plants - 514; Viruses - 2; Other Eukaryotes - 230 (source: NCBI BLink).  protein_id AT1G13730.1p  transcript_id AT1G13730.1  protein_id AT1G13730.1p  transcript_id AT1G13730.1  
At1g13740	chr1:004713969	0.0	W/4713969-4714599,4714743-4715158	AT1G13740.1  CDS  gene_syn ABI FIVE BINDING PROTEIN 2, AFP2, F21F23.17, F21F23_17  gene AFP2  function Encodes a member of a small plant-specific gene family whose members interact with ABI5 and appear to be involved in mediating stress responses. AFP2 mutants affect a number of ABA mediated processes such as germination and response to osmotic and sugar stress. AFP2 nuclear localization is stress dependent.  go_component nucleus|GO:0005634|18484180|IDA  go_process response to stress|GO:0006950|18484180|IMP  go_process response to abscisic acid stimulus|GO:0009737|18484180|IMP  go_function molecular_function|GO:0003674||ND  product AFP2 (ABI FIVE BINDING PROTEIN 2)  note ABI FIVE BINDING PROTEIN 2 (AFP2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to abscisic acid stimulus, response to stress; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1675 (InterPro:IPR012463); BEST Arabidopsis thaliana protein match is: AFP1 (ABI FIVE BINDING PROTEIN) (TAIR:AT1G69260.1); Has 110 Blast hits to 106 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 89; Viruses - 3; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G13740.1p  transcript_id AT1G13740.1  protein_id AT1G13740.1p  transcript_id AT1G13740.1  
At1g13750	chr1:004717918	0.0	C/4717918-4718091,4717749-4717840,4717605-4717671,4717397-4717519,4717207-4717299,4716923-4717134,4716703-4716835,4716404-4716609,4715885-4716320,4715490-4715795	AT1G13750.1  CDS  gene_syn F21F23.18, F21F23_18  go_component endomembrane system|GO:0012505||IEA  go_function acid phosphatase activity|GO:0003993||IEA  go_function hydrolase activity|GO:0016787||IEA  go_function metal ion binding|GO:0046872||IEA  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product calcineurin-like phosphoesterase family protein  note calcineurin-like phosphoesterase family protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity, metal ion binding, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Purple acid phosphatase, N-terminal (InterPro:IPR015914), Metallophosphoesterase (InterPro:IPR004843), Fibronectin, type III (InterPro:IPR003961), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: PAP27 (PURPLE ACID PHOSPHATASE 27); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT5G50400.1); Has 1113 Blast hits to 1105 proteins in 225 species: Archae - 0; Bacteria - 236; Metazoa - 176; Fungi - 60; Plants - 415; Viruses - 0; Other Eukaryotes - 226 (source: NCBI BLink).  protein_id AT1G13750.1p  transcript_id AT1G13750.1  protein_id AT1G13750.1p  transcript_id AT1G13750.1  
At1g13755	chr1:004719181	0.0	C/4719181-4719238,4718761-4719062	AT1G13755.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13755.1p  transcript_id AT1G13755.1  protein_id AT1G13755.1p  transcript_id AT1G13755.1  
At1g13760	chr1:004720963	0.0	C/4720963-4721101,4720365-4720423	AT1G13760.1  CDS  gene_syn F21F23.20, F21F23_20  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13760.1p  transcript_id AT1G13760.1  protein_id AT1G13760.1p  transcript_id AT1G13760.1  
At1g13770	chr1:004721717	0.0	W/4721717-4721838,4721948-4722005,4722086-4722145,4722222-4722260,4722351-4722413,4722514-4722570,4722683-4722746,4722842-4722925,4723018-4723100,4723191-4723320,4723396-4723488,4723611-4723749,4723821-4723864,4723966-4724153,4724247-4724345	AT1G13770.1  CDS  gene_syn F21F23.21, F21F23_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF647 (InterPro:IPR006968); BEST Arabidopsis thaliana protein match is: RUS1 (ROOT UVB SENSITIVE 1) (TAIR:AT3G45890.1); Has 281 Blast hits to 281 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 97; Fungi - 45; Plants - 99; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT1G13770.1p  transcript_id AT1G13770.1  protein_id AT1G13770.1p  transcript_id AT1G13770.1  
At1g13770	chr1:004722243	0.0	W/4722243-4722260,4722351-4722413,4722514-4722570,4722683-4722746,4722842-4722925,4723018-4723100,4723191-4723320,4723396-4723488,4723611-4723749,4723821-4723864,4723966-4724153,4724247-4724345	AT1G13770.2  CDS  gene_syn F21F23.21, F21F23_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF647 (InterPro:IPR006968); BEST Arabidopsis thaliana protein match is: RUS1 (ROOT UVB SENSITIVE 1) (TAIR:AT3G45890.1); Has 274 Blast hits to 274 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 45; Plants - 95; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT1G13770.2p  transcript_id AT1G13770.2  protein_id AT1G13770.2p  transcript_id AT1G13770.2  
At1g13780	chr1:004724681	0.0	W/4724681-4724692,4724773-4725708,4725797-4725937,4726033-4726314	AT1G13780.1  CDS  gene_syn F16A14.1, F16A14_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G27750.1); Has 1281 Blast hits to 1250 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1279; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G13780.1p  transcript_id AT1G13780.1  protein_id AT1G13780.1p  transcript_id AT1G13780.1  
At1g13790	chr1:004727438	0.0	W/4727438-4728656,4728748-4728929,4729015-4729083,4729186-4729479,4729692-4729901,4729993-4730229	AT1G13790.1  CDS  gene_syn F16A14.2, F16A14_2  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product XH/XS domain-containing protein / XS zinc finger domain-containing protein  note XH/XS domain-containing protein / XS zinc finger domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Region of unknown function XS (InterPro:IPR005380), Region of unknown function XH (InterPro:IPR005379), Region of unknown function, putative Zinc finger, XS and XH (InterPro:IPR005381); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein / XS zinc finger domain-containing protein (TAIR:AT3G48670.2); Has 41322 Blast hits to 25026 proteins in 1173 species: Archae - 356; Bacteria - 3518; Metazoa - 21323; Fungi - 2409; Plants - 961; Viruses - 194; Other Eukaryotes - 12561 (source: NCBI BLink).  protein_id AT1G13790.1p  transcript_id AT1G13790.1  protein_id AT1G13790.1p  transcript_id AT1G13790.1  
At1g13800	chr1:004731056	0.0	C/4731056-4733707	AT1G13800.1  CDS  gene_syn F16A14.3, F16A14_3  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G26790.1); Has 26665 Blast hits to 5810 proteins in 174 species: Archae - 5; Bacteria - 22; Metazoa - 517; Fungi - 434; Plants - 24531; Viruses - 0; Other Eukaryotes - 1156 (source: NCBI BLink).  protein_id AT1G13800.1p  transcript_id AT1G13800.1  protein_id AT1G13800.1p  transcript_id AT1G13800.1  
At1g13810	chr1:004734088	0.0	W/4734088-4734119,4734285-4735164	AT1G13810.1  CDS  gene_syn F16A14.30, F16A14_30  go_function DNA binding|GO:0003677||IEA  go_function nuclease activity|GO:0004518||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product DNA binding / nuclease  note DNA binding / nuclease; FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease, phage-type/RecB, C-terminal (InterPro:IPR011604), Restriction endonuclease, type II-like, core (InterPro:IPR011335); BEST Arabidopsis thaliana protein match is: DNA binding / nuclease (TAIR:AT1G67660.2); Has 215 Blast hits to 215 proteins in 29 species: Archae - 0; Bacteria - 10; Metazoa - 26; Fungi - 0; Plants - 30; Viruses - 13; Other Eukaryotes - 136 (source: NCBI BLink).  protein_id AT1G13810.1p  transcript_id AT1G13810.1  protein_id AT1G13810.1p  transcript_id AT1G13810.1  
At1g13820	chr1:004735622	0.0	W/4735622-4735804,4736054-4736148,4736214-4736311,4736416-4736465,4736543-4736638,4736743-4736832,4736960-4737052,4737133-4737228,4737312-4737377,4737465-4737617	AT1G13820.1  CDS  gene_syn F16A14.4, F16A14_4  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT5G39220.1); Has 5140 Blast hits to 5134 proteins in 762 species: Archae - 39; Bacteria - 3125; Metazoa - 236; Fungi - 50; Plants - 322; Viruses - 0; Other Eukaryotes - 1368 (source: NCBI BLink).  protein_id AT1G13820.1p  transcript_id AT1G13820.1  protein_id AT1G13820.1p  transcript_id AT1G13820.1  
At1g13830	chr1:004740875	0.0	C/4740875-4740926,4740461-4740703,4740339-4740375,4739999-4740260	AT1G13830.1  CDS  gene_syn F16A14.5, F16A14_5  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product beta-1,3-glucanase-related  note beta-1,3-glucanase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family protein 17 (TAIR:AT2G03505.1); Has 1380 Blast hits to 1160 proteins in 181 species: Archae - 6; Bacteria - 192; Metazoa - 167; Fungi - 74; Plants - 795; Viruses - 45; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT1G13830.1p  transcript_id AT1G13830.1  protein_id AT1G13830.1p  transcript_id AT1G13830.1  
At1g13840	chr1:004741999	0.0	W/4741999-4742071	AT1G13840.1  tRNA  gene_syn 60120.TRNA-ALA-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: TGC)  transcript_id AT1G13840.1  
At1g13850	chr1:004743095	0.0	W/4743095-4743167	AT1G13850.1  tRNA  gene_syn 60120.TRNA-ALA-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: TGC)  transcript_id AT1G13850.1  
At1g13860	chr1:004745576	0.0	C/4745576-4745707,4745237-4745477,4744900-4745125,4744657-4744814,4744261-4744564,4744001-4744133,4743754-4743903	AT1G13860.2  CDS  gene_syn F16A14.7, F16A14_7  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  product dehydration-responsive protein-related  note dehydration-responsive protein-related; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive protein-related (TAIR:AT2G03480.1); Has 653 Blast hits to 633 proteins in 97 species: Archae - 2; Bacteria - 137; Metazoa - 0; Fungi - 2; Plants - 466; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT1G13860.2p  transcript_id AT1G13860.2  protein_id AT1G13860.2p  transcript_id AT1G13860.2  
At1g13860	chr1:004745793	0.0	C/4745793-4746256,4745576-4745711,4745237-4745477,4744900-4745125,4744657-4744814,4744261-4744564,4744001-4744133,4743754-4743903	AT1G13860.1  CDS  gene_syn F16A14.7, F16A14_7  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  product dehydration-responsive protein-related  note dehydration-responsive protein-related; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive protein-related (TAIR:AT2G03480.1); Has 643 Blast hits to 634 proteins in 97 species: Archae - 2; Bacteria - 137; Metazoa - 0; Fungi - 2; Plants - 455; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G13860.1p  transcript_id AT1G13860.1  protein_id AT1G13860.1p  transcript_id AT1G13860.1  
At1g13860	chr1:004745793	0.0	C/4745793-4746256,4745576-4745711,4745237-4745477,4744900-4745125,4744657-4744814,4744261-4744564,4744001-4744133,4743754-4743903	AT1G13860.3  CDS  gene_syn F16A14.7, F16A14_7  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  product dehydration-responsive protein-related  note dehydration-responsive protein-related; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive protein-related (TAIR:AT2G03480.1); Has 643 Blast hits to 634 proteins in 97 species: Archae - 2; Bacteria - 137; Metazoa - 0; Fungi - 2; Plants - 455; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G13860.3p  transcript_id AT1G13860.3  protein_id AT1G13860.3p  transcript_id AT1G13860.3  
At1g13860	chr1:004745793	0.0	C/4745793-4746256,4745576-4745711,4745237-4745477,4744900-4745125,4744657-4744814,4744261-4744564,4744001-4744133,4743754-4743903	AT1G13860.4  CDS  gene_syn F16A14.7, F16A14_7  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  product dehydration-responsive protein-related  note dehydration-responsive protein-related; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive protein-related (TAIR:AT2G03480.1); Has 643 Blast hits to 634 proteins in 97 species: Archae - 2; Bacteria - 137; Metazoa - 0; Fungi - 2; Plants - 455; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G13860.4p  transcript_id AT1G13860.4  protein_id AT1G13860.4p  transcript_id AT1G13860.4  
At1g13870	chr1:004747437	0.0	C/4747437-4748345	AT1G13870.1  CDS  gene_syn DEFORMED ROOTS AND LEAVES 1, DRL1, F16A14.8, F16A14_8  gene DRL1  function Encodes a homolog of the yeast TOT4/KTI12 protein. Yeast TOT4/KTI12 associates with Elongator, a multisubunit complex that binds the RNA polymerase II transcription elongation complex. Ds insertion mutant has enlarged shoot apical region, 4 to 6 long slender leaves followed by spike-like structures, short roots.  go_component cellular_component|GO:0005575||ND  go_process meristem structural organization|GO:0009933|12615938|IMP  go_process leaf development|GO:0048366|8392411|IMP  go_function calmodulin binding|GO:0005516|12615938|IDA  go_function purine nucleotide binding|GO:0017076|12615938|ISS  product DRL1 (DEFORMED ROOTS AND LEAVES 1); calmodulin binding / purine nucleotide binding  note DEFORMED ROOTS AND LEAVES 1 (DRL1); FUNCTIONS IN: purine nucleotide binding, calmodulin binding; INVOLVED IN: meristem structural organization, leaf development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chromatin associated protein KTI12 (InterPro:IPR013641); Has 234 Blast hits to 232 proteins in 114 species: Archae - 3; Bacteria - 2; Metazoa - 100; Fungi - 85; Plants - 20; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT1G13870.1p  transcript_id AT1G13870.1  protein_id AT1G13870.1p  transcript_id AT1G13870.1  
At1g13880	chr1:004749603	0.0	W/4749603-4749747,4749838-4750967	AT1G13880.1  CDS  gene_syn F16A14.9, F16A14_9  go_function DNA binding|GO:0003677||IEA  go_process biological_process|GO:0008150||ND  product ELM2 domain-containing protein  note ELM2 domain-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), ELM2 (InterPro:IPR000949); BEST Arabidopsis thaliana protein match is: myb family transcription factor / ELM2 domain-containing protein (TAIR:AT2G03470.2); Has 69 Blast hits to 69 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G13880.1p  transcript_id AT1G13880.1  protein_id AT1G13880.1p  transcript_id AT1G13880.1  
At1g13890	chr1:004751581	0.0	W/4751581-4751955,4752059-4752152,4752356-4752480,4752564-4752661,4752745-4752844	AT1G13890.1  CDS  gene_syn ATSNAP30, F16A14.10, F16A14_10, SNAP30, SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30  gene SNAP30  function Encodes a member of a gene family homologous to mammalian SNAP25, a type of SNARE proteins with two chains. There are three members in Arabidopsis: SNAP30, SNAP29, and SNAP33.  go_component cellular_component|GO:0005575||ND  go_process membrane fusion|GO:0006944|11115874|TAS  go_process vesicle-mediated transport|GO:0016192|11115874|TAS  go_function SNAP receptor activity|GO:0005484|11115874|ISS  product SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30); SNAP receptor  note SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30 (SNAP30); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion, vesicle-mediated transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, seedling growth, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33); SNAP receptor/ protein binding (TAIR:AT5G61210.1); Has 706 Blast hits to 706 proteins in 130 species: Archae - 0; Bacteria - 2; Metazoa - 484; Fungi - 61; Plants - 92; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT1G13890.1p  transcript_id AT1G13890.1  protein_id AT1G13890.1p  transcript_id AT1G13890.1  
At1g13900	chr1:004754859	0.0	C/4754859-4755554,4753494-4754768	AT1G13900.1  CDS  gene_syn F16A14.11, F16A14_11  go_component chloroplast|GO:0009507|15028209|IDA  go_function acid phosphatase activity|GO:0003993||IEA  go_function hydrolase activity|GO:0016787||IEA  go_function metal ion binding|GO:0046872||IEA  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product calcineurin-like phosphoesterase family protein  note calcineurin-like phosphoesterase family protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity, metal ion binding, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Purple acid phosphatase, N-terminal (InterPro:IPR015914), Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: PAP9 (PURPLE ACID PHOSPHATASE 9); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT2G03450.1); Has 1052 Blast hits to 1042 proteins in 232 species: Archae - 0; Bacteria - 259; Metazoa - 179; Fungi - 58; Plants - 399; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).  protein_id AT1G13900.1p  transcript_id AT1G13900.1  protein_id AT1G13900.1p  transcript_id AT1G13900.1  
At1g13910	chr1:004755955	0.0	W/4755955-4756051,4756124-4756271,4756356-4756427,4756559-4756630,4756700-4756771,4756848-4756991,4757082-4757162,4757227-4757298,4757381-4757452,4757554-4757625,4757724-4757814	AT1G13910.1  CDS  gene_syn F16A14.12, F16A14_12  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: protein binding (TAIR:AT5G61240.1); Has 54187 Blast hits to 17810 proteins in 751 species: Archae - 26; Bacteria - 3393; Metazoa - 14506; Fungi - 646; Plants - 32565; Viruses - 0; Other Eukaryotes - 3051 (source: NCBI BLink).  protein_id AT1G13910.1p  transcript_id AT1G13910.1  protein_id AT1G13910.1p  transcript_id AT1G13910.1  
At1g13920	chr1:004758188	0.0	W/4758188-4758213,4758299-4758396,4758488-4758645,4758736-4758835,4758924-4759302,4759374-4759455,4759560-4759754	AT1G13920.1  CDS  gene_syn F16A14.13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product remorin family protein  note remorin family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal region (InterPro:IPR005516); BEST Arabidopsis thaliana protein match is: remorin family protein (TAIR:AT1G69325.1); Has 1911 Blast hits to 1777 proteins in 229 species: Archae - 0; Bacteria - 162; Metazoa - 827; Fungi - 315; Plants - 235; Viruses - 3; Other Eukaryotes - 369 (source: NCBI BLink).  protein_id AT1G13920.1p  transcript_id AT1G13920.1  protein_id AT1G13920.1p  transcript_id AT1G13920.1  
At1g13930	chr1:004761091	0.0	W/4761091-4761558	AT1G13930.1  CDS  gene_syn F16A14.14  function Involved in response to salt stress. Knockout mutants are hypersensitive to salt stress.  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process response to salt stress|GO:0009651|18643972|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion, response to salt stress; LOCATED IN: chloroplast, chloroplast stroma, plasma membrane, chloroplast envelope; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: nodulin-related (TAIR:AT2G03440.1); Has 41 Blast hits to 41 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13930.1p  transcript_id AT1G13930.1  protein_id AT1G13930.1p  transcript_id AT1G13930.1  
At1g13940	chr1:004765684	0.0	C/4765684-4765923,4764878-4765589,4762703-4764768	AT1G13940.1  CDS  gene_syn F16A14.15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF863, plant (InterPro:IPR008581); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69360.1); Has 116 Blast hits to 108 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 10; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G13940.1p  transcript_id AT1G13940.1  protein_id AT1G13940.1p  transcript_id AT1G13940.1  
At1g13950	chr1:004773631	0.0	W/4773631-4773750,4774022-4774144,4774238-4774294,4774368-4774442,4774567-4774668	AT1G13950.1  CDS  gene_syn ATELF5A-1, EIF-5A, EIF5A, ELF5A-1, EUKARYOTIC ELONGATION FACTOR 5A, EUKARYOTIC ELONGATION FACTOR 5A-1, F16A14.17  gene ELF5A-1  function Encodes eukaryotic translation initiation factor 5A (EIF-5A).In mammalian cells it functions as a shuttle protein that translocates mRNA from the nucleus to cytoplasmic ribosomes. Overexpression results in an increase in both primary and secondary xylem formation. In RNAi suppressed lines, xylem formation is reduced.  go_function translation initiation factor activity|GO:0003743||IEA  go_component cellular_component|GO:0005575||ND  go_process translational initiation|GO:0006413||ISS  go_process xylem histogenesis|GO:0010089|18304977|IMP  go_function translation initiation factor activity|GO:0003743||ISS  product ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1); translation initiation factor  note EUKARYOTIC ELONGATION FACTOR 5A-1 (ELF5A-1); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: xylem histogenesis, translational initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Translation protein SH3-like, subgroup (InterPro:IPR014722), Eukaryotic initiation factor 5A hypusine (eIF-5A) (InterPro:IPR001884); BEST Arabidopsis thaliana protein match is: ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3); translation initiation factor (TAIR:AT1G69410.1); Has 1013 Blast hits to 1011 proteins in 302 species: Archae - 169; Bacteria - 0; Metazoa - 295; Fungi - 161; Plants - 196; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).  protein_id AT1G13950.1p  transcript_id AT1G13950.1  protein_id AT1G13950.1p  transcript_id AT1G13950.1  
At1g13960	chr1:004776622	0.0	W/4776622-4776955,4777711-4778416,4778499-4778663,4778785-4779043	AT1G13960.2  CDS  gene_syn F16A14.18, WRKY4  gene WRKY4  function Encodes WRKY DNA-binding protein 4 (WRKY4).  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677|15705956|ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY4; DNA binding / transcription factor  note WRKY4; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY3; transcription factor (TAIR:AT2G03340.1); Has 3438 Blast hits to 1847 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 6; Plants - 3345; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT1G13960.2p  transcript_id AT1G13960.2  protein_id AT1G13960.2p  transcript_id AT1G13960.2  
At1g13960	chr1:004776622	0.0	W/4776622-4777068,4777743-4778416,4778499-4778663,4778785-4779043	AT1G13960.1  CDS  gene_syn F16A14.18, WRKY4  gene WRKY4  function Encodes WRKY DNA-binding protein 4 (WRKY4).  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677|15705956|ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY4; DNA binding / transcription factor  note WRKY4; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY3; transcription factor (TAIR:AT2G03340.1); Has 3422 Blast hits to 1854 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 15; Plants - 3322; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT1G13960.1p  transcript_id AT1G13960.1  protein_id AT1G13960.1p  transcript_id AT1G13960.1  
At1g13970	chr1:004781594	0.0	C/4781594-4781882,4781414-4781500,4781060-4781329,4780830-4780968,4780439-4780739,4780166-4780360,4779950-4780072,4779742-4779852	AT1G13970.1  CDS  gene_syn F16A14.19  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G29180.1); Has 129 Blast hits to 129 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 114; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G13970.1p  transcript_id AT1G13970.1  protein_id AT1G13970.1p  transcript_id AT1G13970.1  
At1g13980	chr1:004789587	0.0	W/4789587-4790324,4790780-4794397	AT1G13980.1  CDS  gene_syn EMB30, EMBRYO DEFECTIVE 30, F16A14.20, GN, GNOM, VAN7, VASCULAR NETWORK 7  gene GN  function Encodes a GDP/GTP exchange factor for small G-proteins of the ADP ribosylation factor (RAF) class, and as regulator of intracellular trafficking. Homologous to Sec7p and YEC2 from yeast. Involved in the specification of apical-basal pattern formation. Essential for cell division, expansion and adhesion. It appears that heteotypic binding between the DCB and C-terminal domains of two GNOM proteins is required for membrane association, however, GNOM appears to exist predominantly as a heterodimer formed through DCB-DCB interactions.  go_component intracellular|GO:0005622||IEA  go_process cytokinesis by cell plate formation|GO:0000911|8020095|IMP  go_process establishment of planar polarity|GO:0001736|17084699|IGI  go_process cell wall organization|GO:0007047|11090208|IMP  go_process cell adhesion|GO:0007155|11090208|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|8020095|IMP  go_process unidimensional cell growth|GO:0009826|8020095|IMP  go_process embryonic pattern specification|GO:0009880|8020095|IMP  go_process longitudinal axis specification|GO:0009942|8020095|IMP  go_process phloem or xylem histogenesis|GO:0010087|10887076|IMP  go_process lateral root primordium development|GO:0010386|18394892|IMP  go_process basipetal auxin transport|GO:0010540|18394892|IMP  go_process regulation of vesicle targeting, to, from or within Golgi|GO:0048209|16553903|TAS  go_process root hair cell differentiation|GO:0048765|17084699|IGI  go_function GTP:GDP antiporter activity|GO:0010292|10514379|IGI  go_function protein homodimerization activity|GO:0042803|18203920|IPI  product GN (GNOM); GTP:GDP antiporter/ protein homodimerization  note GNOM (GN); FUNCTIONS IN: GTP:GDP antiporter activity, protein homodimerization activity; INVOLVED IN: in 13 processes; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904); BEST Arabidopsis thaliana protein match is: pattern formation protein, putative (TAIR:AT5G39500.1); Has 2176 Blast hits to 1836 proteins in 178 species: Archae - 0; Bacteria - 24; Metazoa - 1275; Fungi - 457; Plants - 123; Viruses - 0; Other Eukaryotes - 297 (source: NCBI BLink).  protein_id AT1G13980.1p  transcript_id AT1G13980.1  protein_id AT1G13980.1p  transcript_id AT1G13980.1  
At1g13990	chr1:004794810	0.0	W/4794810-4795191,4795282-4795319,4795494-4795539,4795779-4795878,4795960-4796077,4796155-4796250,4796339-4796476	AT1G13990.2  CDS  gene_syn F7A19.8, F7A19_8  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages.  protein_id AT1G13990.2p  transcript_id AT1G13990.2  protein_id AT1G13990.2p  transcript_id AT1G13990.2  
At1g13990	chr1:004794810	0.0	W/4794810-4795191,4795282-4795319,4795494-4795565,4795779-4795816,4795915-4796077,4796155-4796250,4796339-4796476	AT1G13990.3  CDS  gene_syn F7A19.8, F7A19_8  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages.  protein_id AT1G13990.3p  transcript_id AT1G13990.3  protein_id AT1G13990.3p  transcript_id AT1G13990.3  
At1g13990	chr1:004794810	0.0	W/4794810-4795191,4795779-4795878,4795960-4796077,4796155-4796250,4796339-4796476	AT1G13990.1  CDS  gene_syn F7A19.8, F7A19_8  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 14 Blast hits to 14 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13990.1p  transcript_id AT1G13990.1  protein_id AT1G13990.1p  transcript_id AT1G13990.1  
At1g14000	chr1:004797606	0.0	W/4797606-4797923,4798032-4798106,4798364-4798480,4798583-4798677,4798803-4798923,4799002-4799081,4799169-4799228,4799318-4799439,4799543-4799628,4799730-4799845,4799917-4800043	AT1G14000.1  CDS  gene_syn F7A19.9, F7A19_9, VH1-INTERACTING KINASE, VIK  gene VIK  function Encodes a protein with similarity to members of the C1 subgroup of MAP kinase kinase kinases. Interacts physically with the receptor kinase BRL2/VH1 and appears to be involved in auxin and brassinosteriod signaling.  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process auxin mediated signaling pathway|GO:0009734|19000166|IMP  go_process brassinosteroid mediated signaling|GO:0009742|19000166|IMP  go_process leaf vascular tissue pattern formation|GO:0010305|19000166|IMP  go_function protein kinase activity|GO:0004672||ISS  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function ATP binding|GO:0005524||ISS  product VIK (VH1-INTERACTING KINASE); ATP binding / protein kinase/ protein serine/threonine/tyrosine kinase  note VH1-INTERACTING KINASE (VIK); FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: brassinosteroid mediated signaling, auxin mediated signaling pathway, protein amino acid phosphorylation, leaf vascular tissue pattern formation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Integrin-linked protein kinase (InterPro:IPR016253), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin protein kinase, putative (TAIR:AT3G58760.1); Has 102520 Blast hits to 97828 proteins in 3595 species: Archae - 88; Bacteria - 8567; Metazoa - 46209; Fungi - 8354; Plants - 19158; Viruses - 487; Other Eukaryotes - 19657 (source: NCBI BLink).  protein_id AT1G14000.1p  transcript_id AT1G14000.1  protein_id AT1G14000.1p  transcript_id AT1G14000.1  
At1g14010	chr1:004801584	0.0	C/4801584-4801790,4801289-4801498,4800626-4800702,4800385-4800529	AT1G14010.1  CDS  gene_syn F7A19.10, F7A19_10  go_process transport|GO:0006810||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component membrane|GO:0016020||ISS  go_process intracellular protein transport|GO:0006886||ISS  go_function protein transmembrane transporter activity|GO:0008320||ISS  product emp24/gp25L/p24 family protein  note emp24/gp25L/p24 family protein; FUNCTIONS IN: protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: guard cell, callus; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family protein (TAIR:AT1G26690.1); Has 1149 Blast hits to 1147 proteins in 172 species: Archae - 0; Bacteria - 0; Metazoa - 587; Fungi - 291; Plants - 154; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT1G14010.1p  transcript_id AT1G14010.1  protein_id AT1G14010.1p  transcript_id AT1G14010.1  
At1g14020	chr1:004802930	0.0	W/4802930-4803188,4803269-4803336,4803422-4803510,4803603-4803765,4803873-4804162,4804252-4804456,4804564-4804721,4804844-4805111	AT1G14020.1  CDS  gene_syn F7A19.11, F7A19_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G03280.1); Has 430 Blast hits to 422 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 430; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14020.1p  transcript_id AT1G14020.1  protein_id AT1G14020.1p  transcript_id AT1G14020.1  
At1g14030	chr1:004806977	0.0	C/4806977-4807440,4806858-4806886,4806520-4806731,4806282-4806404,4805789-4806193,4805493-4805708	AT1G14030.1  CDS  gene_syn F7A19.12, F7A19_12  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_function [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity|GO:0030785||IEA  go_function [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity|GO:0030785||ISS  product ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putative  note ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putative; FUNCTIONS IN: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rubisco methyltransferase (InterPro:IPR011192), SET (InterPro:IPR001214), Rubisco LSMT substrate-binding (InterPro:IPR015353); BEST Arabidopsis thaliana protein match is: SET domain-containing protein (TAIR:AT3G07670.1); Has 838 Blast hits to 833 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 242; Fungi - 218; Plants - 233; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink).  protein_id AT1G14030.1p  transcript_id AT1G14030.1  protein_id AT1G14030.1p  transcript_id AT1G14030.1  
At1g14040	chr1:004810488	0.0	W/4810488-4811109,4811845-4812214,4812300-4812348,4812433-4812504,4812599-4812728,4812813-4812933,4813032-4813290,4813378-4813482,4813572-4813766,4813848-4814129,4814204-4814340,4814444-4814543	AT1G14040.1  CDS  gene_syn F7A19.13, F7A19_13  go_component integral to membrane|GO:0016021||IEA  go_component integral to membrane|GO:0016021||ISS  product unknown protein  note LOCATED IN: integral to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SPX, N-terminal (InterPro:IPR004331), EXS, C-terminal (InterPro:IPR004342); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G03240.1); Has 732 Blast hits to 696 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 238; Fungi - 246; Plants - 151; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).  protein_id AT1G14040.1p  transcript_id AT1G14040.1  protein_id AT1G14040.1p  transcript_id AT1G14040.1  
At1g14048	chr1:004815683	0.0	C/4815683-4815988	AT1G14048.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: GCK (InterPro:IPR012891); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14060.1); Has 26 Blast hits to 25 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G14048.1p  transcript_id AT1G14048.1  protein_id AT1G14048.1p  transcript_id AT1G14048.1  
At1g14060	chr1:004817354	0.0	C/4817354-4817893	AT1G14060.1  CDS  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: GCK (InterPro:IPR012891); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G02210.1); Has 243 Blast hits to 215 proteins in 60 species: Archae - 0; Bacteria - 2; Metazoa - 93; Fungi - 27; Plants - 49; Viruses - 2; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT1G14060.1p  transcript_id AT1G14060.1  protein_id AT1G14060.1p  transcript_id AT1G14060.1  
At1g14070	chr1:004818548	0.0	W/4818548-4818611,4818685-4820150	AT1G14070.1  CDS  gene_syn F7A19.15, F7A19_15, FUT7  gene FUT7  function member of Xyloglucan fucosyltransferase family  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process cell wall biogenesis|GO:0042546||IEA  go_function fucosyltransferase activity|GO:0008417|11743104|ISS  go_function fucosyltransferase activity|GO:0008417||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product FUT7; fucosyltransferase/ transferase, transferring glycosyl groups  note FUT7; FUNCTIONS IN: transferase activity, transferring glycosyl groups, fucosyltransferase activity; INVOLVED IN: cell wall biogenesis; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: stem, cauline leaf, root; CONTAINS InterPro DOMAIN/s: Xyloglucan fucosyltransferase (InterPro:IPR004938); BEST Arabidopsis thaliana protein match is: FUT6 (FUCOSYLTRANSFERASE 6); fucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT1G14080.1); Has 203 Blast hits to 198 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 202; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G14070.1p  transcript_id AT1G14070.1  protein_id AT1G14070.1p  transcript_id AT1G14070.1  
At1g14071	chr1:004820405	0.0	C/4820405-4820499	AT1G14071.1  miRNA  gene_syn MICRORNA830A, MIR830A  gene MIR830A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCUUCUCCAAAUAGUUUAGGUU  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR830A (MICRORNA830A); miRNA  transcript_id AT1G14071.1  
At1g14080	chr1:004822580	0.0	W/4822580-4822688,4822768-4824218	AT1G14080.1  CDS  gene_syn ATFUT6, F7A19.16, F7A19_16, FUCOSYLTRANSFERASE 6, FUT6  gene FUT6  function member of Xyloglucan fucosyltransferase family  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process cell wall biogenesis|GO:0042546||IEA  go_function fucosyltransferase activity|GO:0008417|11743104|ISS  go_function fucosyltransferase activity|GO:0008417||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product FUT6 (FUCOSYLTRANSFERASE 6); fucosyltransferase/ transferase, transferring glycosyl groups  note FUCOSYLTRANSFERASE 6 (FUT6); FUNCTIONS IN: transferase activity, transferring glycosyl groups, fucosyltransferase activity; INVOLVED IN: cell wall biogenesis; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: stem, flower, root; CONTAINS InterPro DOMAIN/s: Xyloglucan fucosyltransferase (InterPro:IPR004938); BEST Arabidopsis thaliana protein match is: FUT4; fucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT2G15390.2); Has 202 Blast hits to 197 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 202; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14080.1p  transcript_id AT1G14080.1  protein_id AT1G14080.1p  transcript_id AT1G14080.1  
At1g14090	chr1:004824433	0.0	C/4824433-4827436	AT1G14090.1  pseudogenic_transcript  pseudo  gene_syn F7A19.17, F7A19_17  note pseudogene, pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat; blastp match of 33% identity and 1.5e-16 P-value to GP|20219038|gb|AAM15782.1|AC104428_3|AC104428 Putative indole-3-acetate beta-glucosyltransferase {Oryza sativa (japonica cultivar-group)}  
At1g14100	chr1:004827961	0.0	W/4827961-4828066,4828143-4829587	AT1G14100.1  CDS  gene_syn FUCOSYLTRANSFERASE 8, FUT8  gene FUT8  function member of Glycosyltransferase Family- 37. FUT8 was previously associated to AT1G14110  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process cell wall biogenesis|GO:0042546||IEA  go_function galactoside 2-alpha-L-fucosyltransferase activity|GO:0008107||IEA  product FUT8 (FUCOSYLTRANSFERASE 8); galactoside 2-alpha-L-fucosyltransferase  note FUCOSYLTRANSFERASE 8 (FUT8); FUNCTIONS IN: galactoside 2-alpha-L-fucosyltransferase activity; INVOLVED IN: cell wall biogenesis; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Xyloglucan fucosyltransferase (InterPro:IPR004938); BEST Arabidopsis thaliana protein match is: FUT7; fucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT1G14070.1); Has 202 Blast hits to 197 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 202; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14100.1p  transcript_id AT1G14100.1  protein_id AT1G14100.1p  transcript_id AT1G14100.1  
At1g14110	chr1:004830297	0.0	W/4830297-4830405,4830483-4831378,4831496-4831915	AT1G14110.1  CDS  gene_syn ATFUT9, F7A19.19, F7A19_19, FUCOSYLTRANSFERASE 9, FUT9  gene FUT9  function member of xyloglucan fucosyltransferase family  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process cell wall biogenesis|GO:0042546||IEA  go_function fucosyltransferase activity|GO:0008417|11743104|ISS  product FUT9 (FUCOSYLTRANSFERASE 9); fucosyltransferase  note FUCOSYLTRANSFERASE 9 (FUT9); FUNCTIONS IN: fucosyltransferase activity; INVOLVED IN: cell wall biogenesis; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: stem, cauline leaf; CONTAINS InterPro DOMAIN/s: Xyloglucan fucosyltransferase (InterPro:IPR004938); BEST Arabidopsis thaliana protein match is: FUT8 (FUCOSYLTRANSFERASE 8); galactoside 2-alpha-L-fucosyltransferase (TAIR:AT1G14100.1).  protein_id AT1G14110.1p  transcript_id AT1G14110.1  protein_id AT1G14110.1p  transcript_id AT1G14110.1  
At1g14120	chr1:004834490	0.0	C/4834490-4834833,4834019-4834340,4833648-4833920	AT1G14120.1  CDS  gene_syn F7A19.20, F7A19_20  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product 2-oxoglutarate-dependent dioxygenase, putative  note 2-oxoglutarate-dependent dioxygenase, putative; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase, putative (TAIR:AT1G14130.1); Has 4142 Blast hits to 4099 proteins in 511 species: Archae - 0; Bacteria - 408; Metazoa - 75; Fungi - 270; Plants - 2846; Viruses - 0; Other Eukaryotes - 543 (source: NCBI BLink).  protein_id AT1G14120.1p  transcript_id AT1G14120.1  protein_id AT1G14120.1p  transcript_id AT1G14120.1  
At1g14130	chr1:004836694	0.0	C/4836694-4837040,4836041-4836620	AT1G14130.1  CDS  gene_syn F7A19.21, F7A19_21  go_component nucleus|GO:0005634|14617066|IDA  go_function oxidoreductase activity|GO:0016491||IEA  go_process biological_process|GO:0008150||ND  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product 2-oxoglutarate-dependent dioxygenase, putative  note 2-oxoglutarate-dependent dioxygenase, putative; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase, putative (TAIR:AT1G14120.1); Has 4610 Blast hits to 4563 proteins in 547 species: Archae - 0; Bacteria - 464; Metazoa - 97; Fungi - 366; Plants - 2925; Viruses - 0; Other Eukaryotes - 758 (source: NCBI BLink).  protein_id AT1G14130.1p  transcript_id AT1G14130.1  protein_id AT1G14130.1p  transcript_id AT1G14130.1  
At1g14140	chr1:004839216	0.0	C/4839216-4839602,4838131-4838661	AT1G14140.1  CDS  gene_syn F7A19.22, F7A19_22  go_component mitochondrial inner membrane|GO:0005743||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function binding|GO:0005488||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: transporter activity, binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: ATUCP2 (UNCOUPLING PROTEIN 2); oxidative phosphorylation uncoupler (TAIR:AT5G58970.1); Has 20970 Blast hits to 10141 proteins in 366 species: Archae - 0; Bacteria - 0; Metazoa - 10383; Fungi - 5794; Plants - 2960; Viruses - 3; Other Eukaryotes - 1830 (source: NCBI BLink).  protein_id AT1G14140.1p  transcript_id AT1G14140.1  protein_id AT1G14140.1p  transcript_id AT1G14140.1  
At1g14150	chr1:004839885	0.0	W/4839885-4840358,4840534-4840632	AT1G14150.1  CDS  gene_syn F7A19.23, F7A19_23  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process photosynthesis|GO:0015979||IEA  go_function calcium ion binding|GO:0005509||IEA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|TAS  go_component chloroplast photosystem II|GO:0030095||ISS  product oxygen evolving enhancer 3 (PsbQ) family protein  note oxygen evolving enhancer 3 (PsbQ) family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbQ (InterPro:IPR008797); BEST Arabidopsis thaliana protein match is: PSBQ-2; calcium ion binding (TAIR:AT4G05180.1); Has 97 Blast hits to 97 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14150.1p  transcript_id AT1G14150.1  protein_id AT1G14150.1p  transcript_id AT1G14150.1  
At1g14150	chr1:004839885	0.0	W/4839885-4840373	AT1G14150.2  CDS  gene_syn F7A19.23, F7A19_23  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process photosynthesis|GO:0015979||IEA  go_function calcium ion binding|GO:0005509||IEA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|TAS  go_component chloroplast photosystem II|GO:0030095||ISS  product oxygen evolving enhancer 3 (PsbQ) family protein  note oxygen evolving enhancer 3 (PsbQ) family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbQ (InterPro:IPR008797); BEST Arabidopsis thaliana protein match is: oxygen evolving enhancer 3 (PsbQ) family protein (TAIR:AT3G01440.1); Has 89 Blast hits to 89 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14150.2p  transcript_id AT1G14150.2  protein_id AT1G14150.2p  transcript_id AT1G14150.2  
At1g14160	chr1:004841371	0.0	C/4841371-4841660,4841168-4841291,4840798-4841013	AT1G14160.1  CDS  gene_syn F7A19.24, F7A19_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane family protein  note integral membrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT5G15290.1); Has 244 Blast hits to 244 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 244; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14160.1p  transcript_id AT1G14160.1  protein_id AT1G14160.1p  transcript_id AT1G14160.1  
At1g14170	chr1:004844654	0.0	C/4844654-4845253,4844207-4844572,4843875-4844129,4843597-4843779,4843463-4843498	AT1G14170.3  CDS  gene_syn F7A19.25, F7A19_25  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product KH domain-containing protein  note KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT5G15270.2); Has 4545 Blast hits to 1932 proteins in 148 species: Archae - 0; Bacteria - 11; Metazoa - 3518; Fungi - 325; Plants - 523; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).  protein_id AT1G14170.3p  transcript_id AT1G14170.3  protein_id AT1G14170.3p  transcript_id AT1G14170.3  
At1g14170	chr1:004845226	0.0	C/4845226-4845253,4844654-4845126,4844207-4844572,4843875-4844129,4843597-4843779,4843463-4843498	AT1G14170.2  CDS  gene_syn F7A19.25, F7A19_25  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product KH domain-containing protein  note KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT5G15270.2); Has 4481 Blast hits to 1939 proteins in 148 species: Archae - 0; Bacteria - 11; Metazoa - 3393; Fungi - 326; Plants - 598; Viruses - 0; Other Eukaryotes - 153 (source: NCBI BLink).  protein_id AT1G14170.2p  transcript_id AT1G14170.2  protein_id AT1G14170.2p  transcript_id AT1G14170.2  
At1g14170	chr1:004845226	0.0	C/4845226-4845253,4844654-4845150,4844207-4844572,4843875-4844129,4843597-4843779,4843463-4843498	AT1G14170.1  CDS  gene_syn F7A19.25, F7A19_25  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product KH domain-containing protein  note KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT5G15270.2); Has 4576 Blast hits to 1933 proteins in 148 species: Archae - 0; Bacteria - 11; Metazoa - 3518; Fungi - 318; Plants - 563; Viruses - 0; Other Eukaryotes - 166 (source: NCBI BLink).  protein_id AT1G14170.1p  transcript_id AT1G14170.1  protein_id AT1G14170.1p  transcript_id AT1G14170.1  
At1g14180	chr1:004847828	0.0	W/4847828-4848092,4848189-4848970	AT1G14180.1  CDS  gene_syn F7A19.26  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT5G18260.1); Has 25 Blast hits to 25 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14180.1p  transcript_id AT1G14180.1  protein_id AT1G14180.1p  transcript_id AT1G14180.1  
At1g14180	chr1:004847976	0.0	W/4847976-4848092,4848194-4848970	AT1G14180.2  CDS  gene_syn F7A19.26  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT5G18260.1); Has 25 Blast hits to 25 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14180.2p  transcript_id AT1G14180.2  protein_id AT1G14180.2p  transcript_id AT1G14180.2  
At1g14182	chr1:004849448	0.0	C/4849448-4849826	AT1G14182.1  pseudogenic_transcript  pseudo  gene_syn SCR-Like 28, SCRL28  gene SCRL28  function Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).  
At1g14185	chr1:004850284	0.0	W/4850284-4850338,4850429-4851885	AT1G14185.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process cellular alcohol metabolic process|GO:0006066||IEA  go_function oxidoreductase activity, acting on CH-OH group of donors|GO:0016614||IEA  go_function FAD binding|GO:0050660||IEA  go_function aldehyde-lyase activity|GO:0016832||ISS  product glucose-methanol-choline (GMC) oxidoreductase family protein  note glucose-methanol-choline (GMC) oxidoreductase family protein; FUNCTIONS IN: aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding; INVOLVED IN: cellular alcohol metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Glucose-methanol-choline oxidoreductase (InterPro:IPR012132), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867); BEST Arabidopsis thaliana protein match is: glucose-methanol-choline (GMC) oxidoreductase family protein (TAIR:AT1G14190.1); Has 9424 Blast hits to 8766 proteins in 685 species: Archae - 2; Bacteria - 2482; Metazoa - 860; Fungi - 1258; Plants - 139; Viruses - 9; Other Eukaryotes - 4674 (source: NCBI BLink).  protein_id AT1G14185.1p  transcript_id AT1G14185.1  protein_id AT1G14185.1p  transcript_id AT1G14185.1  
At1g14190	chr1:004852802	0.0	W/4852802-4854307	AT1G14190.1  CDS  gene_syn F7A19.28, F7A19_28  go_process cellular alcohol metabolic process|GO:0006066||IEA  go_function oxidoreductase activity, acting on CH-OH group of donors|GO:0016614||IEA  go_function FAD binding|GO:0050660||IEA  go_component cellular_component|GO:0005575||ND  go_function aldehyde-lyase activity|GO:0016832||ISS  product glucose-methanol-choline (GMC) oxidoreductase family protein  note glucose-methanol-choline (GMC) oxidoreductase family protein; FUNCTIONS IN: aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding; INVOLVED IN: cellular alcohol metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Glucose-methanol-choline oxidoreductase (InterPro:IPR012132), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867); BEST Arabidopsis thaliana protein match is: glucose-methanol-choline (GMC) oxidoreductase family protein (TAIR:AT1G14185.1); Has 9397 Blast hits to 8716 proteins in 687 species: Archae - 2; Bacteria - 2428; Metazoa - 934; Fungi - 1263; Plants - 148; Viruses - 6; Other Eukaryotes - 4616 (source: NCBI BLink).  protein_id AT1G14190.1p  transcript_id AT1G14190.1  protein_id AT1G14190.1p  transcript_id AT1G14190.1  
At1g14200	chr1:004854532	0.0	C/4854532-4855071	AT1G14200.1  CDS  gene_syn F7A19.29, F7A19_29  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G26800.1); Has 6947 Blast hits to 6927 proteins in 223 species: Archae - 0; Bacteria - 6; Metazoa - 2376; Fungi - 551; Plants - 2760; Viruses - 56; Other Eukaryotes - 1198 (source: NCBI BLink).  protein_id AT1G14200.1p  transcript_id AT1G14200.1  protein_id AT1G14200.1p  transcript_id AT1G14200.1  
At1g14205	chr1:004855582	0.0	W/4855582-4855681,4855777-4855868,4855965-4856117,4856206-4856299,4856418-4856458,4856541-4856762	AT1G14205.1  CDS  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L18 family protein  note ribosomal protein L18 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18/L5 (InterPro:IPR005484); BEST Arabidopsis thaliana protein match is: ribosomal protein L18 family protein (TAIR:AT1G48350.1); Has 1386 Blast hits to 1375 proteins in 460 species: Archae - 0; Bacteria - 933; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 395 (source: NCBI BLink).  protein_id AT1G14205.1p  transcript_id AT1G14205.1  protein_id AT1G14205.1p  transcript_id AT1G14205.1  
At1g14210	chr1:004857840	0.0	C/4857840-4857941,4857600-4857755,4857261-4857465,4856902-4857182	AT1G14210.1  CDS  gene_syn F7A19.31, F7A19_31  go_component endomembrane system|GO:0012505||IEA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function RNA binding|GO:0003723||IEA  go_function ribonuclease T2 activity|GO:0033897||IEA  go_function endoribonuclease activity|GO:0004521||ISS  product ribonuclease T2 family protein  note ribonuclease T2 family protein; FUNCTIONS IN: ribonuclease T2 activity, endoribonuclease activity, RNA binding; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease T2 (InterPro:IPR001568), Ribonuclease T2, active site (InterPro:IPR018188); BEST Arabidopsis thaliana protein match is: ribonuclease T2 family protein (TAIR:AT1G14220.1); Has 1815 Blast hits to 1814 proteins in 306 species: Archae - 0; Bacteria - 139; Metazoa - 145; Fungi - 174; Plants - 1274; Viruses - 6; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT1G14210.1p  transcript_id AT1G14210.1  protein_id AT1G14210.1p  transcript_id AT1G14210.1  
At1g14220	chr1:004859494	0.0	C/4859494-4859601,4859233-4859388,4858955-4859153,4858642-4858865	AT1G14220.1  CDS  gene_syn F7A19.32, F7A19_32  go_component endomembrane system|GO:0012505||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function RNA binding|GO:0003723||IEA  go_function ribonuclease T2 activity|GO:0033897||IEA  go_function endoribonuclease activity|GO:0004521||ISS  product ribonuclease T2 family protein  note ribonuclease T2 family protein; FUNCTIONS IN: ribonuclease T2 activity, endoribonuclease activity, RNA binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, root; CONTAINS InterPro DOMAIN/s: Ribonuclease T2 (InterPro:IPR001568), Ribonuclease T2, active site (InterPro:IPR018188); BEST Arabidopsis thaliana protein match is: RNS3 (RIBONUCLEASE 3); RNA binding / endoribonuclease/ ribonuclease T2 (TAIR:AT1G26820.1); Has 2007 Blast hits to 2006 proteins in 379 species: Archae - 0; Bacteria - 274; Metazoa - 145; Fungi - 176; Plants - 1319; Viruses - 7; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT1G14220.1p  transcript_id AT1G14220.1  protein_id AT1G14220.1p  transcript_id AT1G14220.1  
At1g14225	chr1:004860515	0.0	C/4860515-4860649	AT1G14225.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G14225.1p  transcript_id AT1G14225.1  protein_id AT1G14225.1p  transcript_id AT1G14225.1  
At1g14230	chr1:004861497	0.0	W/4861497-4862103,4862343-4862455,4862588-4862695,4862924-4862966,4863070-4863261,4863347-4863444,4863545-4863741,4863838-4863991	AT1G14230.1  CDS  gene_syn 7A19.33, 7A19_33, F7A19.33, F7A19_33  go_function hydrolase activity|GO:0016787||IEA  go_function hydrolase activity|GO:0016787||ISS  product nucleoside phosphatase family protein / GDA1/CD39 family protein  note nucleoside phosphatase family protein / GDA1/CD39 family protein; FUNCTIONS IN: hydrolase activity; CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407); BEST Arabidopsis thaliana protein match is: nucleoside phosphatase family protein / GDA1/CD39 family protein (TAIR:AT1G14250.1); Has 1089 Blast hits to 1083 proteins in 168 species: Archae - 0; Bacteria - 22; Metazoa - 528; Fungi - 214; Plants - 198; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).  protein_id AT1G14230.1p  transcript_id AT1G14230.1  protein_id AT1G14230.1p  transcript_id AT1G14230.1  
At1g14240	chr1:004865159	0.0	W/4865159-4865732,4865810-4865922,4866424-4866531,4866707-4866749,4866856-4867044,4867144-4867241,4867347-4867543,4867648-4867777	AT1G14240.1  CDS  gene_syn F7A19.34, F7A19_34  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product nucleoside phosphatase family protein / GDA1/CD39 family protein  note nucleoside phosphatase family protein / GDA1/CD39 family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407); BEST Arabidopsis thaliana protein match is: nucleoside phosphatase family protein / GDA1/CD39 family protein (TAIR:AT1G14250.1); Has 1092 Blast hits to 1087 proteins in 171 species: Archae - 0; Bacteria - 20; Metazoa - 528; Fungi - 214; Plants - 197; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).  protein_id AT1G14240.1p  transcript_id AT1G14240.1  protein_id AT1G14240.1p  transcript_id AT1G14240.1  
At1g14240	chr1:004865159	0.0	W/4865159-4865732,4865810-4865922,4866424-4866531,4866707-4866749,4866856-4867044,4867144-4867241,4867347-4867543,4867648-4867777	AT1G14240.2  CDS  gene_syn F7A19.34, F7A19_34  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product nucleoside phosphatase family protein / GDA1/CD39 family protein  note nucleoside phosphatase family protein / GDA1/CD39 family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407); BEST Arabidopsis thaliana protein match is: nucleoside phosphatase family protein / GDA1/CD39 family protein (TAIR:AT1G14250.1); Has 1092 Blast hits to 1087 proteins in 171 species: Archae - 0; Bacteria - 20; Metazoa - 528; Fungi - 214; Plants - 197; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).  protein_id AT1G14240.2p  transcript_id AT1G14240.2  protein_id AT1G14240.2p  transcript_id AT1G14240.2  
At1g14240	chr1:004865159	0.0	W/4865159-4865732,4865810-4865922,4866424-4866531,4866707-4866749,4866856-4867044,4867144-4867241,4867347-4867543,4867648-4867777	AT1G14240.4  CDS  gene_syn F7A19.34, F7A19_34  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product nucleoside phosphatase family protein / GDA1/CD39 family protein  note nucleoside phosphatase family protein / GDA1/CD39 family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407); BEST Arabidopsis thaliana protein match is: nucleoside phosphatase family protein / GDA1/CD39 family protein (TAIR:AT1G14250.1); Has 1092 Blast hits to 1087 proteins in 171 species: Archae - 0; Bacteria - 20; Metazoa - 528; Fungi - 214; Plants - 197; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).  protein_id AT1G14240.4p  transcript_id AT1G14240.4  protein_id AT1G14240.4p  transcript_id AT1G14240.4  
At1g14240	chr1:004865159	0.0	W/4865159-4865732,4865822-4865922,4866424-4866531,4866707-4866749,4866856-4867044,4867144-4867241,4867347-4867543,4867648-4867777	AT1G14240.3  CDS  gene_syn F7A19.34, F7A19_34  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product nucleoside phosphatase family protein / GDA1/CD39 family protein  note nucleoside phosphatase family protein / GDA1/CD39 family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407); BEST Arabidopsis thaliana protein match is: nucleoside phosphatase family protein / GDA1/CD39 family protein (TAIR:AT1G14250.1); Has 1072 Blast hits to 1067 proteins in 163 species: Archae - 0; Bacteria - 20; Metazoa - 523; Fungi - 212; Plants - 197; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).  protein_id AT1G14240.3p  transcript_id AT1G14240.3  protein_id AT1G14240.3p  transcript_id AT1G14240.3  
At1g14250	chr1:004868675	0.0	W/4868675-4869251,4869478-4869590,4869815-4869922,4870120-4870162,4870307-4870504,4870587-4870684,4870783-4870979,4871071-4871203	AT1G14250.1  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_function hydrolase activity|GO:0016787||IEA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product nucleoside phosphatase family protein / GDA1/CD39 family protein  note nucleoside phosphatase family protein / GDA1/CD39 family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407); BEST Arabidopsis thaliana protein match is: nucleoside phosphatase family protein / GDA1/CD39 family protein (TAIR:AT1G14240.4); Has 1087 Blast hits to 1083 proteins in 168 species: Archae - 0; Bacteria - 20; Metazoa - 530; Fungi - 212; Plants - 197; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).  protein_id AT1G14250.1p  transcript_id AT1G14250.1  protein_id AT1G14250.1p  transcript_id AT1G14250.1  
At1g14260	chr1:004873200	0.0	W/4873200-4873439,4873541-4873612,4873694-4873761,4873854-4874004,4874077-4874163,4874251-4874430	AT1G14260.1  CDS  gene_syn F14L17.2, F14L17_2  go_function ubiquitin-protein ligase activity|GO:0004842|15644464|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G02960.4); Has 1265 Blast hits to 1265 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 607; Fungi - 81; Plants - 327; Viruses - 49; Other Eukaryotes - 201 (source: NCBI BLink).  protein_id AT1G14260.1p  transcript_id AT1G14260.1  protein_id AT1G14260.1p  transcript_id AT1G14260.1  
At1g14260	chr1:004873200	0.0	W/4873200-4873439,4873541-4873612,4873694-4873761,4873854-4874004,4874077-4874163,4874251-4874430	AT1G14260.2  CDS  gene_syn F14L17.2, F14L17_2  go_function ubiquitin-protein ligase activity|GO:0004842|15644464|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G02960.4); Has 1265 Blast hits to 1265 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 607; Fungi - 81; Plants - 327; Viruses - 49; Other Eukaryotes - 201 (source: NCBI BLink).  protein_id AT1G14260.2p  transcript_id AT1G14260.2  protein_id AT1G14260.2p  transcript_id AT1G14260.2  
At1g14270	chr1:004876361	0.0	C/4876361-4876443,4876112-4876194,4875895-4876028,4875758-4875807,4875591-4875683,4875424-4875515,4875231-4875337,4875099-4875140	AT1G14270.3  CDS  gene_syn F14L17.3, F14L17_3  go_component membrane|GO:0016020||IEA  go_process proteolysis|GO:0006508||ISS  product CAAX amino terminal protease family protein  note CAAX amino terminal protease family protein; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675); BEST Arabidopsis thaliana protein match is: CAAX amino terminal protease family protein (TAIR:AT5G60750.1); Has 1950 Blast hits to 1950 proteins in 521 species: Archae - 48; Bacteria - 1564; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 271 (source: NCBI BLink).  protein_id AT1G14270.3p  transcript_id AT1G14270.3  protein_id AT1G14270.3p  transcript_id AT1G14270.3  
At1g14270	chr1:004876361	0.0	C/4876361-4876443,4876112-4876194,4875895-4876028,4875758-4875807,4875591-4875683,4875424-4875515,4875231-4875337,4875099-4875140	AT1G14270.4  CDS  gene_syn F14L17.3, F14L17_3  go_component membrane|GO:0016020||IEA  go_process proteolysis|GO:0006508||ISS  product CAAX amino terminal protease family protein  note CAAX amino terminal protease family protein; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675); BEST Arabidopsis thaliana protein match is: CAAX amino terminal protease family protein (TAIR:AT5G60750.1); Has 1950 Blast hits to 1950 proteins in 521 species: Archae - 48; Bacteria - 1564; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 271 (source: NCBI BLink).  protein_id AT1G14270.4p  transcript_id AT1G14270.4  protein_id AT1G14270.4p  transcript_id AT1G14270.4  
At1g14270	chr1:004876361	0.0	C/4876361-4876503,4876112-4876194,4875895-4876028,4875758-4875807,4875591-4875683,4875424-4875515,4875231-4875337,4875099-4875140	AT1G14270.2  CDS  gene_syn F14L17.3, F14L17_3  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process proteolysis|GO:0006508||ISS  product CAAX amino terminal protease family protein  note CAAX amino terminal protease family protein; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675); BEST Arabidopsis thaliana protein match is: CAAX amino terminal protease family protein (TAIR:AT5G60750.1); Has 1953 Blast hits to 1953 proteins in 522 species: Archae - 48; Bacteria - 1566; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 272 (source: NCBI BLink).  protein_id AT1G14270.2p  transcript_id AT1G14270.2  protein_id AT1G14270.2p  transcript_id AT1G14270.2  
At1g14270	chr1:004876941	0.0	C/4876941-4877195,4876670-4876767,4876361-4876468,4876112-4876194,4875895-4876028,4875758-4875807,4875591-4875683,4875424-4875515,4875231-4875337,4875099-4875140	AT1G14270.1  CDS  gene_syn F14L17.3, F14L17_3  go_component membrane|GO:0016020||IEA  go_process proteolysis|GO:0006508||ISS  product CAAX amino terminal protease family protein  note CAAX amino terminal protease family protein; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675); BEST Arabidopsis thaliana protein match is: CAAX amino terminal protease family protein (TAIR:AT5G60750.1); Has 1959 Blast hits to 1957 proteins in 522 species: Archae - 48; Bacteria - 1570; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 272 (source: NCBI BLink).  protein_id AT1G14270.1p  transcript_id AT1G14270.1  protein_id AT1G14270.1p  transcript_id AT1G14270.1  
At1g14280	chr1:004877657	0.0	W/4877657-4878985	AT1G14280.1  CDS  gene_syn F14L17.4, F14L17_4, PHYTOCHROME KINASE SUBSTRATE 2, PKS2  gene PKS2  function Encodes phytochrome kinase substrate 2. PKS proteins are critical for hypocotyl phototropism.  go_component chloroplast|GO:0009507||IEA  go_process phototropism|GO:0009638|16777956|IGI  go_function molecular_function|GO:0003674||ND  product PKS2 (PHYTOCHROME KINASE SUBSTRATE 2)  note PHYTOCHROME KINASE SUBSTRATE 2 (PKS2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: phototropism; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: PKS1 (PHYTOCHROME KINASE SUBSTRATE 1); protein binding (TAIR:AT2G02950.1); Has 111 Blast hits to 97 proteins in 23 species: Archae - 0; Bacteria - 2; Metazoa - 19; Fungi - 6; Plants - 54; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G14280.1p  transcript_id AT1G14280.1  protein_id AT1G14280.1p  transcript_id AT1G14280.1  
At1g14290	chr1:004881560	0.0	C/4881560-4881784,4880307-4880861	AT1G14290.1  CDS  gene_syn F14L17.5, F14L17_5, SBH2, SPHINGOID BASE HYDROXYLASE 2  gene SBH2  function Encodes one of the two redundant sphingoid base hydroxylases (SBH). Involved in sphingolipid trihydroxy long-chain base (4-hydroxysphinganine) biosynthesis. Double mutants of SBHs were dwarfed and not able to progress from vegetative to reproductive growth.  go_component endoplasmic reticulum|GO:0005783|18643979|IDA  go_component Golgi apparatus|GO:0005794|18643979|IDA  go_process photomorphogenesis|GO:0009640|18612100|IMP  go_process sphingoid biosynthetic process|GO:0046520|18612100|IMP  go_function sphingosine hydroxylase activity|GO:0000170|11297741|IGI  go_function catalytic activity|GO:0003824||ISS  product SBH2 (SPHINGOID BASE HYDROXYLASE 2); catalytic/ sphingosine hydroxylase  note SPHINGOID BASE HYDROXYLASE 2 (SBH2); FUNCTIONS IN: sphingosine hydroxylase activity, catalytic activity; INVOLVED IN: sphingoid biosynthetic process, photomorphogenesis; LOCATED IN: endoplasmic reticulum, Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: SBH1 (SPHINGOID BASE HYDROXYLASE 1); catalytic/ sphingosine hydroxylase (TAIR:AT1G69640.1); Has 1741 Blast hits to 1713 proteins in 276 species: Archae - 0; Bacteria - 270; Metazoa - 376; Fungi - 453; Plants - 225; Viruses - 2; Other Eukaryotes - 415 (source: NCBI BLink).  protein_id AT1G14290.1p  transcript_id AT1G14290.1  protein_id AT1G14290.1p  transcript_id AT1G14290.1  
At1g14300	chr1:004884633	0.0	C/4884633-4884686,4884399-4884521,4884112-4884309,4883930-4884008,4883492-4883637,4883277-4883390,4883045-4883176,4882817-4882930,4882654-4882713	AT1G14300.1  CDS  gene_syn F14L17.6, F14L17_6  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0507 (InterPro:IPR007205), Armadillo-like helical (InterPro:IPR011989), Uncharacterised protein family UPF0507, C-terminal (InterPro:IPR007206), Armadillo-type fold (InterPro:IPR016024); Has 231 Blast hits to 231 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 83; Fungi - 94; Plants - 27; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT1G14300.1p  transcript_id AT1G14300.1  protein_id AT1G14300.1p  transcript_id AT1G14300.1  
At1g14310	chr1:004885049	0.0	W/4885049-4885151,4885329-4885439,4885523-4885605,4885705-4885788,4885879-4885954,4886041-4886113,4886211-4886284,4886408-4886501,4886606-4886672	AT1G14310.1  CDS  gene_syn F14L17.7, F14L17_7  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function phosphoglycolate phosphatase activity|GO:0008967||IEA  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity|GO:0016787||ISS  product haloacid dehalogenase-like hydrolase family protein  note haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Haloacid dehydrogenase/epoxide hydrolase (InterPro:IPR005833), HAD-superfamily hydrolase, subfamily IA, REG-2-like (InterPro:IPR011949), HAD-superfamily hydrolase, subfamily IA, variant 1 (InterPro:IPR006439); BEST Arabidopsis thaliana protein match is: haloacid dehalogenase-like hydrolase family protein (TAIR:AT2G41250.1); Has 3123 Blast hits to 3123 proteins in 777 species: Archae - 164; Bacteria - 1829; Metazoa - 172; Fungi - 51; Plants - 56; Viruses - 0; Other Eukaryotes - 851 (source: NCBI BLink).  protein_id AT1G14310.1p  transcript_id AT1G14310.1  protein_id AT1G14310.1p  transcript_id AT1G14310.1  
At1g14315	chr1:004886861	0.0	C/4886861-4887439	AT1G14315.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G09650.1); Has 104 Blast hits to 101 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G14315.1p  transcript_id AT1G14315.1  protein_id AT1G14315.1p  transcript_id AT1G14315.1  
At1g14315	chr1:004887539	0.0	C/4887539-4887933,4886861-4887377	AT1G14315.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: glyoxal oxidase-related (TAIR:AT1G14430.1).  protein_id AT1G14315.2p  transcript_id AT1G14315.2  protein_id AT1G14315.2p  transcript_id AT1G14315.2  
At1g14320	chr1:004888270	0.0	W/4888270-4888279,4888549-4888766,4888938-4889050,4889146-4889227,4889340-4889408	AT1G14320.2  CDS  gene_syn F14L17.9, F14L17_9, SAC52, SUPPRESSOR OF ACAULIS 52  gene SAC52  function Encodes a ribosomal protein L10 and may be involved in translation regulation. Semi-dominant mutations in SAC552 can suppress defects in acaulis5, which encodes a thermospermine synthase, by enhancing translation of acl5 and itself.  go_component plasma membrane|GO:0005886|17151019|IDA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product SAC52 (SUPPRESSOR OF ACAULIS 52); structural constituent of ribosome  note SUPPRESSOR OF ACAULIS 52 (SAC52); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, plasma membrane, large ribosomal subunit; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L10e (InterPro:IPR001197), Ribosomal protein L10e/L16 (InterPro:IPR016180); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L10 (RPL10B) (TAIR:AT1G26910.1); Has 1427 Blast hits to 1248 proteins in 446 species: Archae - 212; Bacteria - 0; Metazoa - 527; Fungi - 145; Plants - 112; Viruses - 0; Other Eukaryotes - 431 (source: NCBI BLink).  protein_id AT1G14320.2p  transcript_id AT1G14320.2  protein_id AT1G14320.2p  transcript_id AT1G14320.2  
At1g14320	chr1:004888270	0.0	W/4888270-4888279,4888549-4889050,4889146-4889227,4889340-4889408	AT1G14320.1  CDS  gene_syn F14L17.9, F14L17_9, SAC52, SUPPRESSOR OF ACAULIS 52  gene SAC52  function Encodes a ribosomal protein L10 and may be involved in translation regulation. Semi-dominant mutations in SAC552 can suppress defects in acaulis5, which encodes a thermospermine synthase, by enhancing translation of acl5 and itself.  go_component nucleolus|GO:0005730|15496452|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412|18694459|TAS  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product SAC52 (SUPPRESSOR OF ACAULIS 52); structural constituent of ribosome  note SUPPRESSOR OF ACAULIS 52 (SAC52); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L10e (InterPro:IPR001197), Ribosomal protein L10e/L16 (InterPro:IPR016180), Ribosomal protein L10e, conserved site (InterPro:IPR018255); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L10 (RPL10B) (TAIR:AT1G26910.1); Has 1313 Blast hits to 1311 proteins in 457 species: Archae - 225; Bacteria - 9; Metazoa - 446; Fungi - 102; Plants - 110; Viruses - 0; Other Eukaryotes - 421 (source: NCBI BLink).  protein_id AT1G14320.1p  transcript_id AT1G14320.1  protein_id AT1G14320.1p  transcript_id AT1G14320.1  
At1g14330	chr1:004890375	0.0	C/4890375-4891700	AT1G14330.1  CDS  gene_syn F14L17.10, F14L17_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT2G02870.3); Has 6361 Blast hits to 3445 proteins in 198 species: Archae - 6; Bacteria - 233; Metazoa - 5087; Fungi - 15; Plants - 597; Viruses - 137; Other Eukaryotes - 286 (source: NCBI BLink).  protein_id AT1G14330.1p  transcript_id AT1G14330.1  protein_id AT1G14330.1p  transcript_id AT1G14330.1  
At1g14340	chr1:004897709	0.0	W/4897709-4897827,4897919-4897994,4898080-4898193,4898351-4898776	AT1G14340.1  CDS  gene_syn F14L17.11, F14L17_11  go_process oxidation reduction|GO:0055114||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function nucleic acid binding|GO:0003676||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nucleic acid binding / oxidoreductase (TAIR:AT3G01210.1); Has 201 Blast hits to 201 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 59; Plants - 135; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G14340.1p  transcript_id AT1G14340.1  protein_id AT1G14340.1p  transcript_id AT1G14340.1  
At1g14345	chr1:004899176	0.0	W/4899176-4899766	AT1G14345.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process oxidation reduction|GO:0055114||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product oxidoreductase  note oxidoreductase; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395); Has 255 Blast hits to 255 proteins in 67 species: Archae - 0; Bacteria - 103; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).  protein_id AT1G14345.1p  transcript_id AT1G14345.1  protein_id AT1G14345.1p  transcript_id AT1G14345.1  
At1g14350	chr1:004908427	0.0	W/4908427-4908519,4908607-4908653,4908820-4908876,4908978-4909050,4909157-4909212,4909309-4909476,4909572-4909866,4909962-4910104,4910184-4910451,4910537-4910647	AT1G14350.1  CDS  gene_syn AtMYB124, F14L17.12, F14L17_12, FLP, FOUR LIPS, MYB124, myb domain protein 124  gene FLP  function Encodes a putative MYB transcription factor involved in stomata development, loss of FLP activity results in a failure of guard mother cells (GMCs) to adopt the guard cell fate, thus they continue to divide resulting in abnormal stomata consisting of clusters of numerous guard cell-like cells. This phenotype is enhanced in double mutants with MYB88.  go_process regulation of transcription, DNA-dependent|GO:0006355|11597504|ISS  go_process guard cell differentiation|GO:0010052|16155180|IGI  go_process guard cell differentiation|GO:0010052||NAS  go_function DNA binding|GO:0003677|11597504|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product FLP (FOUR LIPS); DNA binding / transcription factor  note FOUR LIPS (FLP); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, guard cell differentiation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB88 (myb domain protein 88); DNA binding / transcription factor (TAIR:AT2G02820.2); Has 5963 Blast hits to 5288 proteins in 354 species: Archae - 0; Bacteria - 0; Metazoa - 730; Fungi - 322; Plants - 3160; Viruses - 6; Other Eukaryotes - 1745 (source: NCBI BLink).  protein_id AT1G14350.1p  transcript_id AT1G14350.1  protein_id AT1G14350.1p  transcript_id AT1G14350.1  
At1g14350	chr1:004908427	0.0	W/4908427-4908519,4908607-4908653,4908820-4908876,4908978-4909050,4909157-4909212,4909309-4909476,4909572-4909866,4909962-4910104,4910184-4910451,4910537-4910647	AT1G14350.2  CDS  gene_syn AtMYB124, F14L17.12, F14L17_12, FLP, FOUR LIPS, MYB124, myb domain protein 124  gene FLP  function Encodes a putative MYB transcription factor involved in stomata development, loss of FLP activity results in a failure of guard mother cells (GMCs) to adopt the guard cell fate, thus they continue to divide resulting in abnormal stomata consisting of clusters of numerous guard cell-like cells. This phenotype is enhanced in double mutants with MYB88.  go_process regulation of transcription, DNA-dependent|GO:0006355|11597504|ISS  go_process guard cell differentiation|GO:0010052|16155180|IGI  go_process guard cell differentiation|GO:0010052||NAS  go_function DNA binding|GO:0003677|11597504|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product FLP (FOUR LIPS); DNA binding / transcription factor  note FOUR LIPS (FLP); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, guard cell differentiation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB88 (myb domain protein 88); DNA binding / transcription factor (TAIR:AT2G02820.2); Has 5963 Blast hits to 5288 proteins in 354 species: Archae - 0; Bacteria - 0; Metazoa - 730; Fungi - 322; Plants - 3160; Viruses - 6; Other Eukaryotes - 1745 (source: NCBI BLink).  protein_id AT1G14350.2p  transcript_id AT1G14350.2  protein_id AT1G14350.2p  transcript_id AT1G14350.2  
At1g14360	chr1:004912926	0.0	C/4912926-4913029,4912639-4912736,4912413-4912543,4912268-4912298,4912079-4912182,4911865-4911986,4911362-4911767	AT1G14360.1  CDS  gene_syn ATUTR3, F14L17.13, F14L17_13, UDP-GALACTOSE TRANSPORTER 3, UTR3  gene UTR3  go_component endomembrane system|GO:0012505||IEA  go_function pyrimidine nucleotide sugar transmembrane transporter activity|GO:0015165||ISS  product UTR3 (UDP-GALACTOSE TRANSPORTER 3); pyrimidine nucleotide sugar transmembrane transporter  note UDP-GALACTOSE TRANSPORTER 3 (UTR3); FUNCTIONS IN: pyrimidine nucleotide sugar transmembrane transporter activity; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UAA transporter (InterPro:IPR013657); BEST Arabidopsis thaliana protein match is: UTR1 (UDP-GALACTOSE TRANSPORTER 1); UDP-galactose transmembrane transporter/ UDP-glucose transmembrane transporter/ pyrimidine nucleotide sugar transmembrane transporter (TAIR:AT2G02810.1); Has 750 Blast hits to 744 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 423; Fungi - 103; Plants - 108; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT1G14360.1p  transcript_id AT1G14360.1  protein_id AT1G14360.1p  transcript_id AT1G14360.1  
At1g14370	chr1:004915859	0.0	W/4915859-4915925,4916195-4916541,4916636-4916771,4916873-4917009,4917096-4917219,4917490-4917959	AT1G14370.1  CDS  gene_syn APK2A, F14L17.14, F14L17_14, PROTEIN KINASE 2A  gene APK2A  function Encodes protein kinase APK2a.  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product APK2A (PROTEIN KINASE 2A); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note PROTEIN KINASE 2A (APK2A); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: APK2B (PROTEIN KINASE 2B); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT2G02800.2); Has 81001 Blast hits to 79861 proteins in 2584 species: Archae - 40; Bacteria - 7280; Metazoa - 35631; Fungi - 6176; Plants - 18440; Viruses - 319; Other Eukaryotes - 13115 (source: NCBI BLink).  protein_id AT1G14370.1p  transcript_id AT1G14370.1  protein_id AT1G14370.1p  transcript_id AT1G14370.1  
At1g14380	chr1:004920672	0.0	C/4920672-4920761,4920359-4920592,4920085-4920273,4919915-4919995,4918407-4919775,4918279-4918310	AT1G14380.1  CDS  gene_syn F14L17.15, F14L17_15, IQ67 DOMAIN PROTEIN 28, IQD28  gene IQD28  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product IQD28 (IQ67 DOMAIN PROTEIN 28); calmodulin binding  note IQ67 DOMAIN PROTEIN 28 (IQD28); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQD29 (IQ-domain 29); calmodulin binding (TAIR:AT2G02790.1); Has 5726 Blast hits to 4293 proteins in 313 species: Archae - 0; Bacteria - 281; Metazoa - 2433; Fungi - 436; Plants - 559; Viruses - 34; Other Eukaryotes - 1983 (source: NCBI BLink).  protein_id AT1G14380.1p  transcript_id AT1G14380.1  protein_id AT1G14380.1p  transcript_id AT1G14380.1  
At1g14380	chr1:004920672	0.0	C/4920672-4920761,4920359-4920592,4920085-4920273,4919915-4919995,4918407-4919775,4918279-4918310	AT1G14380.3  CDS  gene_syn F14L17.15, F14L17_15, IQ67 DOMAIN PROTEIN 28, IQD28  gene IQD28  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product IQD28 (IQ67 DOMAIN PROTEIN 28); calmodulin binding  note IQ67 DOMAIN PROTEIN 28 (IQD28); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQD29 (IQ-domain 29); calmodulin binding (TAIR:AT2G02790.1); Has 5726 Blast hits to 4293 proteins in 313 species: Archae - 0; Bacteria - 281; Metazoa - 2433; Fungi - 436; Plants - 559; Viruses - 34; Other Eukaryotes - 1983 (source: NCBI BLink).  protein_id AT1G14380.3p  transcript_id AT1G14380.3  protein_id AT1G14380.3p  transcript_id AT1G14380.3  
At1g14380	chr1:004920672	0.0	C/4920672-4920761,4920359-4920592,4920085-4920273,4919915-4919995,4919224-4919775,4918407-4919037,4918279-4918310	AT1G14380.2  CDS  gene_syn F14L17.15, F14L17_15, IQ67 DOMAIN PROTEIN 28, IQD28  gene IQD28  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product IQD28 (IQ67 DOMAIN PROTEIN 28); calmodulin binding  note IQ67 DOMAIN PROTEIN 28 (IQD28); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQD29 (IQ-domain 29); calmodulin binding (TAIR:AT2G02790.1); Has 3910 Blast hits to 3034 proteins in 270 species: Archae - 2; Bacteria - 174; Metazoa - 1744; Fungi - 313; Plants - 510; Viruses - 14; Other Eukaryotes - 1153 (source: NCBI BLink).  protein_id AT1G14380.2p  transcript_id AT1G14380.2  protein_id AT1G14380.2p  transcript_id AT1G14380.2  
At1g14390	chr1:004924277	0.0	W/4924277-4925522,4925599-4925720,4925800-4926046,4926127-4926320,4926360-4926794	AT1G14390.1  CDS  gene_syn F14L17.16, F14L17_16  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT2G02780.1); Has 60751 Blast hits to 33447 proteins in 1087 species: Archae - 20; Bacteria - 3500; Metazoa - 15937; Fungi - 887; Plants - 36384; Viruses - 79; Other Eukaryotes - 3944 (source: NCBI BLink).  protein_id AT1G14390.1p  transcript_id AT1G14390.1  protein_id AT1G14390.1p  transcript_id AT1G14390.1  
At1g14400	chr1:004928012	0.0	C/4928012-4928136,4927890-4927915,4927704-4927793,4927518-4927606,4927294-4927422	AT1G14400.1  CDS  gene_syn ATUBC1, F14L17.17, F14L17_17, UBC1, UBIQUITIN CARRIER PROTEIN 1, UBIQUITIN CONJUGATING ENZYME 1  gene UBC1  function ubiquitin carrier protein  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_process negative regulation of flower development|GO:0009910|18798874|IGI  go_process leaf morphogenesis|GO:0009965|18798874|IGI  go_process vegetative to reproductive phase transition|GO:0010228|18849490|IGI  go_process histone H2B ubiquitination|GO:0033523|18849490|IGI  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC1 (UBIQUITIN CARRIER PROTEIN 1); ubiquitin-protein ligase  note UBIQUITIN CARRIER PROTEIN 1 (UBC1); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: negative regulation of flower development, histone H2B ubiquitination, vegetative to reproductive phase transition, leaf morphogenesis, ubiquitin-dependent protein catabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2); ubiquitin-protein ligase (TAIR:AT2G02760.1); Has 7803 Blast hits to 7771 proteins in 311 species: Archae - 0; Bacteria - 0; Metazoa - 3700; Fungi - 1521; Plants - 1189; Viruses - 22; Other Eukaryotes - 1371 (source: NCBI BLink).  protein_id AT1G14400.1p  transcript_id AT1G14400.1  protein_id AT1G14400.1p  transcript_id AT1G14400.1  
At1g14400	chr1:004928012	0.0	C/4928012-4928136,4927890-4927915,4927704-4927793,4927518-4927606,4927294-4927422	AT1G14400.2  CDS  gene_syn ATUBC1, F14L17.17, F14L17_17, UBC1, UBIQUITIN CARRIER PROTEIN 1, UBIQUITIN CONJUGATING ENZYME 1  gene UBC1  function ubiquitin carrier protein  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_process negative regulation of flower development|GO:0009910|18798874|IGI  go_process leaf morphogenesis|GO:0009965|18798874|IGI  go_process vegetative to reproductive phase transition|GO:0010228|18849490|IGI  go_process histone H2B ubiquitination|GO:0033523|18849490|IGI  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC1 (UBIQUITIN CARRIER PROTEIN 1); ubiquitin-protein ligase  note UBIQUITIN CARRIER PROTEIN 1 (UBC1); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: negative regulation of flower development, histone H2B ubiquitination, vegetative to reproductive phase transition, leaf morphogenesis, ubiquitin-dependent protein catabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2); ubiquitin-protein ligase (TAIR:AT2G02760.1); Has 7803 Blast hits to 7771 proteins in 311 species: Archae - 0; Bacteria - 0; Metazoa - 3700; Fungi - 1521; Plants - 1189; Viruses - 22; Other Eukaryotes - 1371 (source: NCBI BLink).  protein_id AT1G14400.2p  transcript_id AT1G14400.2  protein_id AT1G14400.2p  transcript_id AT1G14400.2  
At1g14410	chr1:004930591	0.0	C/4930591-4930810,4930291-4930391,4930106-4930198,4929878-4929972,4929725-4929798,4929563-4929651,4929352-4929471	AT1G14410.1  CDS  gene_syn A. THALIANA WHIRLY 1, ATWHY1, F14L17.18, F14L17_18, PTAC1, WHIRLY 1, WHY1  gene WHY1  function Encodes a homolog of the potato p24 protein. Binds single strand telomeric repeats. Negatively regulates telomerase activity and telomere length.  go_component nucleoid|GO:0009295|16326926|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component nucleus|GO:0005634|15967440|IDA  go_component telomerase holoenzyme complex|GO:0005697|17217467|IDA  go_component chloroplast|GO:0009507|15967440|IDA  go_component plastid chromosome|GO:0009508|16326926|IDA  go_process defense response|GO:0006952|15708347|TAS  go_process negative regulation of telomere maintenance via telomerase|GO:0032211|17217467|IMP  go_function DNA binding|GO:0003677|15967440|ISS  go_function telomeric DNA binding|GO:0042162|17217467|IDA  product WHY1 (WHIRLY 1); DNA binding / telomeric DNA binding  note WHIRLY 1 (WHY1); FUNCTIONS IN: DNA binding, telomeric DNA binding; INVOLVED IN: negative regulation of telomere maintenance via telomerase, defense response; LOCATED IN: plastid chromosome, nucleus, chloroplast, nucleoid, telomerase holoenzyme complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ssDNA-binding transcriptional regulator (InterPro:IPR009044), Plant transcription factor (InterPro:IPR013742); BEST Arabidopsis thaliana protein match is: WHY3 (WHIRLY 3); DNA binding (TAIR:AT2G02740.2); Has 56 Blast hits to 55 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G14410.1p  transcript_id AT1G14410.1  protein_id AT1G14410.1p  transcript_id AT1G14410.1  
At1g14420	chr1:004933197	0.0	C/4933197-4933405,4932424-4933111,4931844-4932326	AT1G14420.1  CDS  gene_syn AT59, F14L17.19, F14L17_19  gene AT59  go_component endomembrane system|GO:0012505||IEA  go_process plant-type cell wall organization|GO:0009664|9278171|TAS  go_function lyase activity|GO:0016829||ISS  go_function pectate lyase activity|GO:0030570|9278171|ISS  go_function pectate lyase activity|GO:0030570||ISS  product AT59; lyase/ pectate lyase  note AT59; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase, N-terminal (InterPro:IPR007524), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectate lyase family protein (TAIR:AT2G02720.1); Has 935 Blast hits to 930 proteins in 165 species: Archae - 0; Bacteria - 369; Metazoa - 0; Fungi - 157; Plants - 399; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G14420.1p  transcript_id AT1G14420.1  protein_id AT1G14420.1p  transcript_id AT1G14420.1  
At1g14430	chr1:004934359	0.0	W/4934359-4936041,4936155-4937021	AT1G14430.1  CDS  gene_syn F14L17.20, F14L17_20  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glyoxal oxidase-related  note glyoxal oxidase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Immunoglobulin E-set (InterPro:IPR014756), Region of unknown function DUF1929 (InterPro:IPR015202), F-box associated type 1 (InterPro:IPR017451), Galactose oxidase, beta-propeller (InterPro:IPR015916), Immunoglobulin-like fold (InterPro:IPR013783), F-box associated (InterPro:IPR006527), Glyoxal oxidase, N-terminal (InterPro:IPR009880); BEST Arabidopsis thaliana protein match is: glyoxal oxidase-related (TAIR:AT3G57620.1); Has 756 Blast hits to 750 proteins in 127 species: Archae - 0; Bacteria - 232; Metazoa - 2; Fungi - 169; Plants - 341; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G14430.1p  transcript_id AT1G14430.1  protein_id AT1G14430.1p  transcript_id AT1G14430.1  
At1g14440	chr1:004939076	0.0	C/4939076-4940014	AT1G14440.1  CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 31, AtHB31, F14L17.21, F14L17_21  gene AtHB31  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_function transcription factor activity|GO:0003700||ISS  product AtHB31 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 31); DNA binding / transcription factor  note ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 31 (AtHB31); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein Cys/His-rich dimerisation region (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ATHB21 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 21); DNA binding / transcription activator/ transcription factor (TAIR:AT2G02540.1); Has 364 Blast hits to 339 proteins in 60 species: Archae - 0; Bacteria - 10; Metazoa - 45; Fungi - 3; Plants - 269; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT1G14440.1p  transcript_id AT1G14440.1  protein_id AT1G14440.1p  transcript_id AT1G14440.1  
At1g14440	chr1:004939076	0.0	C/4939076-4940014	AT1G14440.2  CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 31, AtHB31, F14L17.21, F14L17_21  gene AtHB31  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_function transcription factor activity|GO:0003700||ISS  product AtHB31 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 31); DNA binding / transcription factor  note ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 31 (AtHB31); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein Cys/His-rich dimerisation region (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ATHB21 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 21); DNA binding / transcription activator/ transcription factor (TAIR:AT2G02540.1); Has 364 Blast hits to 339 proteins in 60 species: Archae - 0; Bacteria - 10; Metazoa - 45; Fungi - 3; Plants - 269; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT1G14440.2p  transcript_id AT1G14440.2  protein_id AT1G14440.2p  transcript_id AT1G14440.2  
At1g14450	chr1:004947337	0.0	C/4947337-4947558	AT1G14450.1  CDS  gene_syn F14L17.22, F14L17_22  go_component mitochondrial membrane|GO:0031966|16407270|IDA  go_component respiratory chain complex I|GO:0045271|16407270|IDA  go_process photorespiration|GO:0009853|16407270|TAS  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrial membrane, respiratory chain complex I; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G02510.1); Has 41 Blast hits to 41 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14450.1p  transcript_id AT1G14450.1  protein_id AT1G14450.1p  transcript_id AT1G14450.1  
At1g14455	chr1:004947985	0.0	C/4947985-4948278	AT1G14455.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 49 Blast hits to 29 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 42; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G14455.1p  transcript_id AT1G14455.1  protein_id AT1G14455.1p  transcript_id AT1G14455.1  
At1g14460	chr1:004950771	0.0	C/4950771-4952750,4950455-4950674,4949855-4950364,4949302-4949776,4949138-4949219,4948962-4949045	AT1G14460.1  CDS  gene_syn F14L17.24, F14L17_24  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process DNA replication|GO:0006260||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed DNA polymerase activity|GO:0003887||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  product DNA polymerase-related  note DNA polymerase-related; FUNCTIONS IN: nucleoside-triphosphatase activity, DNA binding, DNA-directed DNA polymerase activity, nucleotide binding, ATP binding; INVOLVED IN: DNA replication; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), DNA polymerase III clamp loader subunit, C-terminal (InterPro:IPR008921), DNA polymerase III, subunits gamma and tau (InterPro:IPR012763); BEST Arabidopsis thaliana protein match is: STI (STICHEL); ATP binding / DNA binding / DNA-directed DNA polymerase (TAIR:AT2G02480.1); Has 10712 Blast hits to 10690 proteins in 1552 species: Archae - 331; Bacteria - 5096; Metazoa - 350; Fungi - 341; Plants - 152; Viruses - 39; Other Eukaryotes - 4403 (source: NCBI BLink).  protein_id AT1G14460.1p  transcript_id AT1G14460.1  protein_id AT1G14460.1p  transcript_id AT1G14460.1  
At1g14470	chr1:004954080	0.0	W/4954080-4955702	AT1G14470.1  CDS  gene_syn F14L17.25, F14L17_25  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G08070.1); Has 16693 Blast hits to 5303 proteins in 152 species: Archae - 1; Bacteria - 16; Metazoa - 270; Fungi - 137; Plants - 15799; Viruses - 0; Other Eukaryotes - 470 (source: NCBI BLink).  protein_id AT1G14470.1p  transcript_id AT1G14470.1  protein_id AT1G14470.1p  transcript_id AT1G14470.1  
At1g14480	chr1:004956404	0.0	W/4956404-4957000,4957160-4957888	AT1G14480.1  CDS  gene_syn F14L17.26, F14L17_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT1G14500.1); Has 7259 Blast hits to 4035 proteins in 203 species: Archae - 6; Bacteria - 372; Metazoa - 3887; Fungi - 139; Plants - 677; Viruses - 29; Other Eukaryotes - 2149 (source: NCBI BLink).  protein_id AT1G14480.1p  transcript_id AT1G14480.1  protein_id AT1G14480.1p  transcript_id AT1G14480.1  
At1g14490	chr1:004958705	0.0	C/4958705-4959325	AT1G14490.1  CDS  gene_syn F14L17.27, F14L17_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DNA-binding protein-related  note DNA-binding protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: DNA-binding protein-related (TAIR:AT5G49700.1); Has 415 Blast hits to 414 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 415; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14490.1p  transcript_id AT1G14490.1  protein_id AT1G14490.1p  transcript_id AT1G14490.1  
At1g14500	chr1:004960375	0.0	W/4960375-4960971,4961067-4961780	AT1G14500.1  CDS  gene_syn F14L17.28, F14L17_28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: protein binding (TAIR:AT1G14480.1); Has 8120 Blast hits to 4283 proteins in 225 species: Archae - 8; Bacteria - 498; Metazoa - 4962; Fungi - 256; Plants - 734; Viruses - 27; Other Eukaryotes - 1635 (source: NCBI BLink).  protein_id AT1G14500.1p  transcript_id AT1G14500.1  protein_id AT1G14500.1p  transcript_id AT1G14500.1  
At1g14510	chr1:004964058	0.0	C/4964058-4964154,4963810-4963842,4963066-4963294,4962539-4962665,4962171-4962443	AT1G14510.1  CDS  gene_syn AL7, ALFIN-LIKE 7, F14L17.29, F14L17_29  gene AL7  function AL7 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.  go_component nucleus|GO:0005634|19154204|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function methylated histone residue binding|GO:0035064|19154204|IDA  product AL7 (ALFIN-LIKE 7); DNA binding / methylated histone residue binding  note ALFIN-LIKE 7 (AL7); FUNCTIONS IN: methylated histone residue binding, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: AL6 (ALFIN-LIKE 6); DNA binding / methylated histone residue binding (TAIR:AT2G02470.1); Has 1349 Blast hits to 1308 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 734; Fungi - 217; Plants - 345; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT1G14510.1p  transcript_id AT1G14510.1  protein_id AT1G14510.1p  transcript_id AT1G14510.1  
At1g14518	chr1:004966810	0.0	C/4966810-4967493	AT1G14518.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G14518.1  
At1g14520	chr1:004969918	0.0	C/4969918-4969954,4969691-4969802,4969331-4969617,4969130-4969242,4968917-4969039,4968761-4968830,4968501-4968661,4968376-4968402	AT1G14520.2  CDS  gene_syn F14L17.30, F14L17_30, MIOX1, MYO-INISITOL OXYGENASE  gene MIOX1  function Encodes MIOX1. Belongs to myo-inositol oxygenase gene family.  go_component cytoplasm|GO:0005737||IEA  go_process inositol catabolic process|GO:0019310||IEA  go_function oxidoreductase activity|GO:0016491||ISS  go_function inositol oxygenase activity|GO:0050113|15660207|IMP  product MIOX1 (MYO-INISITOL OXYGENASE); inositol oxygenase/ oxidoreductase  note MYO-INISITOL OXYGENASE (MIOX1); FUNCTIONS IN: inositol oxygenase activity, oxidoreductase activity; INVOLVED IN: inositol catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: stem, fruit, flower, root, leaf; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF706 (InterPro:IPR007828); BEST Arabidopsis thaliana protein match is: MIOX2 (MYO-INOSITOL OXYGENASE 2); inositol oxygenase (TAIR:AT2G19800.1).  protein_id AT1G14520.2p  transcript_id AT1G14520.2  protein_id AT1G14520.2p  transcript_id AT1G14520.2  
At1g14520	chr1:004969918	0.0	C/4969918-4969954,4969691-4969808,4969331-4969617,4969130-4969242,4968917-4969039,4968761-4968830,4968501-4968661,4968376-4968402	AT1G14520.1  CDS  gene_syn F14L17.30, F14L17_30, MIOX1, MYO-INISITOL OXYGENASE  gene MIOX1  function Encodes MIOX1. Belongs to myo-inositol oxygenase gene family.  go_component cytoplasm|GO:0005737||IEA  go_process inositol catabolic process|GO:0019310||IEA  go_function oxidoreductase activity|GO:0016491||ISS  go_function inositol oxygenase activity|GO:0050113|15660207|IMP  product MIOX1 (MYO-INISITOL OXYGENASE); inositol oxygenase/ oxidoreductase  note MYO-INISITOL OXYGENASE (MIOX1); FUNCTIONS IN: inositol oxygenase activity, oxidoreductase activity; INVOLVED IN: inositol catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: stem, fruit, flower, root, leaf; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF706 (InterPro:IPR007828); BEST Arabidopsis thaliana protein match is: MIOX2 (MYO-INOSITOL OXYGENASE 2); inositol oxygenase (TAIR:AT2G19800.1); Has 347 Blast hits to 347 proteins in 106 species: Archae - 0; Bacteria - 12; Metazoa - 116; Fungi - 78; Plants - 54; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).  protein_id AT1G14520.1p  transcript_id AT1G14520.1  protein_id AT1G14520.1p  transcript_id AT1G14520.1  
At1g14530	chr1:004973433	0.0	C/4973433-4973597,4973166-4973256,4973034-4973086,4972849-4972941,4972702-4972773,4972456-4972528,4972323-4972368,4971998-4972061,4971854-4971907,4971648-4971725,4971420-4971512	AT1G14530.1  CDS  gene_syn F14L17.31, F14L17_31, THH1, TOM THREE HOMOLOG 1  gene THH1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function virion binding|GO:0046790|11836427|IPI  product THH1 (TOM THREE HOMOLOG 1); virion binding  note TOM THREE HOMOLOG 1 (THH1); FUNCTIONS IN: virion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana protein match is: TOM3; protein binding (TAIR:AT2G02180.1); Has 158 Blast hits to 158 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT1G14530.1p  transcript_id AT1G14530.1  protein_id AT1G14530.1p  transcript_id AT1G14530.1  
At1g14530	chr1:004973433	0.0	C/4973433-4973597,4973166-4973256,4973034-4973086,4972849-4972941,4972702-4972773,4972456-4972528,4972323-4972368,4971998-4972061,4971854-4971907,4971648-4971725,4971420-4971512	AT1G14530.2  CDS  gene_syn F14L17.31, F14L17_31, THH1, TOM THREE HOMOLOG 1  gene THH1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function virion binding|GO:0046790|11836427|IPI  product THH1 (TOM THREE HOMOLOG 1); virion binding  note TOM THREE HOMOLOG 1 (THH1); FUNCTIONS IN: virion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana protein match is: TOM3; protein binding (TAIR:AT2G02180.1); Has 158 Blast hits to 158 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT1G14530.2p  transcript_id AT1G14530.2  protein_id AT1G14530.2p  transcript_id AT1G14530.2  
At1g14540	chr1:004975403	0.0	C/4975403-4975600,4975099-4975290,4974712-4974877,4974233-4974624	AT1G14540.1  CDS  gene_syn F14L17.32, F14L17_32  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product anionic peroxidase, putative  note anionic peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, sepal, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: anionic peroxidase, putative (TAIR:AT1G14550.1); Has 2965 Blast hits to 2948 proteins in 232 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 121; Plants - 2791; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G14540.1p  transcript_id AT1G14540.1  protein_id AT1G14540.1p  transcript_id AT1G14540.1  
At1g14549	chr1:004978794	0.0	C/4978794-4978907	AT1G14549.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G14549.1p  transcript_id AT1G14549.1  protein_id AT1G14549.1p  transcript_id AT1G14549.1  
At1g14550	chr1:004979028	0.0	W/4979028-4979240,4979326-4979517,4979607-4979775,4979933-4980324	AT1G14550.1  CDS  gene_syn F14L17.33, F14L17_33  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product anionic peroxidase, putative  note anionic peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: anionic peroxidase, putative (TAIR:AT1G14540.1); Has 3100 Blast hits to 3086 proteins in 229 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 255; Plants - 2791; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT1G14550.1p  transcript_id AT1G14550.1  protein_id AT1G14550.1p  transcript_id AT1G14550.1  
At1g14560	chr1:004981300	0.0	W/4981300-4981455,4981615-4981700,4981785-4981992,4982105-4982237,4982492-4982676,4982764-4982898,4982990-4983082	AT1G14560.1  CDS  gene_syn T5E21.6, T5E21_6  go_component mitochondrial inner membrane|GO:0005743||IEA  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function transporter activity|GO:0005215||ISS  go_function binding|GO:0005488||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: transporter activity, binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: endomembrane system, mitochondrial inner membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Graves disease carrier protein (InterPro:IPR002167); BEST Arabidopsis thaliana protein match is: mitochondrial substrate carrier family protein (TAIR:AT4G26180.1); Has 18676 Blast hits to 9940 proteins in 359 species: Archae - 0; Bacteria - 0; Metazoa - 9411; Fungi - 4887; Plants - 2588; Viruses - 0; Other Eukaryotes - 1790 (source: NCBI BLink).  protein_id AT1G14560.1p  transcript_id AT1G14560.1  protein_id AT1G14560.1p  transcript_id AT1G14560.1  
At1g14570	chr1:004983770	0.0	W/4983770-4983871,4984426-4984550,4984636-4984746,4985428-4985656,4985738-4985815,4986173-4986241,4986335-4986584,4986664-4986938,4987025-4987192	AT1G14570.1  CDS  gene_syn T5E21.7, T5E21_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product UBX domain-containing protein  note UBX domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UAS (InterPro:IPR006577), Uncharacterised conserved protein UCP037991, UAS, UBX (InterPro:IPR017346), UBX (InterPro:IPR001012), Ubiquitin interacting motif (InterPro:IPR003903), UBA-like (InterPro:IPR009060), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT4G14250.1); Has 420 Blast hits to 408 proteins in 125 species: Archae - 0; Bacteria - 2; Metazoa - 186; Fungi - 87; Plants - 89; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT1G14570.1p  transcript_id AT1G14570.1  protein_id AT1G14570.1p  transcript_id AT1G14570.1  
At1g14570	chr1:004983770	0.0	W/4983770-4983871,4984426-4984550,4984636-4984746,4985428-4985656,4985738-4985815,4986173-4986241,4986335-4986584,4986664-4986938,4987025-4987192	AT1G14570.2  CDS  gene_syn T5E21.7, T5E21_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product UBX domain-containing protein  note UBX domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UAS (InterPro:IPR006577), Uncharacterised conserved protein UCP037991, UAS, UBX (InterPro:IPR017346), UBX (InterPro:IPR001012), Ubiquitin interacting motif (InterPro:IPR003903), UBA-like (InterPro:IPR009060), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT4G14250.1); Has 420 Blast hits to 408 proteins in 125 species: Archae - 0; Bacteria - 2; Metazoa - 186; Fungi - 87; Plants - 89; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT1G14570.2p  transcript_id AT1G14570.2  protein_id AT1G14570.2p  transcript_id AT1G14570.2  
At1g14570	chr1:004983770	0.0	W/4983770-4983871,4984426-4984550,4984636-4984746,4985491-4985656,4985738-4985815,4986173-4986241,4986335-4986584,4986664-4986938,4987025-4987192	AT1G14570.3  CDS  gene_syn T5E21.7, T5E21_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product UBX domain-containing protein  note UBX domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UAS (InterPro:IPR006577), Uncharacterised conserved protein UCP037991, UAS, UBX (InterPro:IPR017346), UBX (InterPro:IPR001012), Ubiquitin interacting motif (InterPro:IPR003903), UBA-like (InterPro:IPR009060), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT4G14250.1); Has 427 Blast hits to 418 proteins in 130 species: Archae - 0; Bacteria - 2; Metazoa - 188; Fungi - 89; Plants - 86; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT1G14570.3p  transcript_id AT1G14570.3  protein_id AT1G14570.3p  transcript_id AT1G14570.3  
At1g14570	chr1:004983770	0.0	W/4983770-4983871,4984426-4984550,4984636-4984746,4985491-4985656,4985738-4985815,4986173-4986241,4986335-4986584,4986664-4986938,4987025-4987192	AT1G14570.4  CDS  gene_syn T5E21.7, T5E21_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product UBX domain-containing protein  note UBX domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UAS (InterPro:IPR006577), Uncharacterised conserved protein UCP037991, UAS, UBX (InterPro:IPR017346), UBX (InterPro:IPR001012), Ubiquitin interacting motif (InterPro:IPR003903), UBA-like (InterPro:IPR009060), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT4G14250.1); Has 427 Blast hits to 418 proteins in 130 species: Archae - 0; Bacteria - 2; Metazoa - 188; Fungi - 89; Plants - 86; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT1G14570.4p  transcript_id AT1G14570.4  protein_id AT1G14570.4p  transcript_id AT1G14570.4  
At1g14580	chr1:004990070	0.0	W/4990070-4990256,4990484-4990880,4991623-4992442	AT1G14580.1  CDS  gene_syn T5E21.8, T5E21_8  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, 4 leaf senescence stage, LP.02 two leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: AtIDD4 (Arabidopsis thaliana Indeterminate(ID)-Domain 4); transcription factor (TAIR:AT2G02080.1); Has 42992 Blast hits to 16360 proteins in 199 species: Archae - 0; Bacteria - 3; Metazoa - 41215; Fungi - 185; Plants - 386; Viruses - 0; Other Eukaryotes - 1203 (source: NCBI BLink).  protein_id AT1G14580.1p  transcript_id AT1G14580.1  protein_id AT1G14580.1p  transcript_id AT1G14580.1  
At1g14590	chr1:005000384	0.0	C/5000384-5000617,4999711-5000076,4999125-4999606,4998957-4999035	AT1G14590.1  CDS  gene_syn T5E21.9, T5E21_9  go_component chloroplast thylakoid lumen|GO:0009543|11719511|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid lumen; CONTAINS InterPro DOMAIN/s: Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G02061.1); Has 179 Blast hits to 175 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 172; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G14590.1p  transcript_id AT1G14590.1  protein_id AT1G14590.1p  transcript_id AT1G14590.1  
At1g14600	chr1:005003229	0.0	C/5003229-5003370,5002980-5003056,5002790-5002829,5002287-5002413,5001998-5002121,5001185-5001442	AT1G14600.1  CDS  gene_syn T5E21.10, T5E21_10  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product DNA binding / transcription factor  note DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT2G02060.1); Has 871 Blast hits to 869 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 866; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G14600.1p  transcript_id AT1G14600.1  protein_id AT1G14600.1p  transcript_id AT1G14600.1  
At1g14610	chr1:005014352	0.0	C/5014352-5014486,5014167-5014232,5013593-5013655,5013288-5013466,5013134-5013206,5012896-5012961,5012732-5012815,5012523-5012600,5012352-5012435,5012108-5012187,5011889-5011946,5011512-5011814,5011251-5011421,5010917-5011116,5010371-5010773,5010012-5010263,5009427-5009927,5009236-5009342,5009012-5009111,5008779-5008927,5008502-5008676	AT1G14610.1  CDS  gene_syn T5E21.11, T5E21_11, TWIN 2, TWN2, VALRS, VALYL TRNA SYNTHETASE  gene TWN2  function Required for proper proliferation of basal cells.  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function valine-tRNA ligase activity|GO:0004832||IEA  go_function ATP binding|GO:0005524||IEA  go_component mitochondrion|GO:0005739|16251277|IDA  go_component chloroplast|GO:0009507|16251277|IDA  go_process tRNA aminoacylation for protein translation|GO:0006418||ISS  go_process embryonic development ending in seed dormancy|GO:0009793|16297076|IMP  go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS  go_function ATP binding|GO:0005524||ISS  product TWN2 (TWIN 2); ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / valine-tRNA ligase  note TWIN 2 (TWN2); FUNCTIONS IN: valine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Valyl-tRNA synthetase, class Ia (InterPro:IPR002303), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080); BEST Arabidopsis thaliana protein match is: EMB2247 (embryo defective 2247); ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / valine-tRNA ligase (TAIR:AT5G16715.1); Has 29124 Blast hits to 27207 proteins in 1830 species: Archae - 553; Bacteria - 10301; Metazoa - 1757; Fungi - 663; Plants - 197; Viruses - 2; Other Eukaryotes - 15651 (source: NCBI BLink).  protein_id AT1G14610.1p  transcript_id AT1G14610.1  protein_id AT1G14610.1p  transcript_id AT1G14610.1  
At1g14620	chr1:005016341	0.0	C/5016341-5016501,5016046-5016111,5015622-5015696,5015397-5015526,5015177-5015302,5014948-5015091	AT1G14620.1  CDS  gene_syn DECOY, T5E21.12, T5E21_12  gene DECOY  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DECOY (DECOY)  note DECOY (DECOY); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 181 Blast hits to 181 proteins in 92 species: Archae - 0; Bacteria - 2; Metazoa - 71; Fungi - 79; Plants - 19; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G14620.1p  transcript_id AT1G14620.1  protein_id AT1G14620.1p  transcript_id AT1G14620.1  
At1g14620	chr1:005016341	0.0	C/5016341-5016501,5016046-5016111,5015622-5015696,5015397-5015526,5015177-5015302,5014985-5015089	AT1G14620.2  CDS  gene_syn DECOY, T5E21.12, T5E21_12  gene DECOY  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DECOY (DECOY)  note DECOY (DECOY); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages.  protein_id AT1G14620.2p  transcript_id AT1G14620.2  protein_id AT1G14620.2p  transcript_id AT1G14620.2  
At1g14630	chr1:005019995	0.0	W/5019995-5020073,5020327-5020511,5020620-5020671,5020832-5020924,5021174-5021445	AT1G14630.1  CDS  gene_syn T5E21.19, T5E21_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01990.1); Has 61 Blast hits to 60 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14630.1p  transcript_id AT1G14630.1  protein_id AT1G14630.1p  transcript_id AT1G14630.1  
At1g14640	chr1:005023656	0.0	W/5023656-5025716,5025809-5025955	AT1G14640.1  CDS  gene_syn T5E21.18, T5E21_18  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_process RNA processing|GO:0006396||ISS  go_function RNA binding|GO:0003723||ISS  product SWAP (Suppressor-of-White-APricot)/surp domain-containing protein  note SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; EXPRESSED IN: male gametophyte, flower, pollen tube, seed; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061); BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (TAIR:AT1G14650.2); Has 27099 Blast hits to 16547 proteins in 854 species: Archae - 36; Bacteria - 2584; Metazoa - 12357; Fungi - 3580; Plants - 4182; Viruses - 702; Other Eukaryotes - 3658 (source: NCBI BLink).  protein_id AT1G14640.1p  transcript_id AT1G14640.1  protein_id AT1G14640.1p  transcript_id AT1G14640.1  
At1g14642	chr1:005026364	0.0	W/5026364-5026405,5026496-5026558	AT1G14642.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT1G14642.1p  transcript_id AT1G14642.1  protein_id AT1G14642.1p  transcript_id AT1G14642.1  
At1g14650	chr1:005028077	0.0	W/5028077-5030176,5030263-5030520	AT1G14650.1  CDS  gene_syn T5E21.13, T5E21_13  go_process RNA processing|GO:0006396||IEA  go_process protein modification process|GO:0006464||IEA  go_function RNA binding|GO:0003723||IEA  go_process RNA processing|GO:0006396||ISS  go_function RNA binding|GO:0003723||ISS  product SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein  note SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; FUNCTIONS IN: RNA binding; INVOLVED IN: protein modification process, RNA processing; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061), Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (TAIR:AT1G14640.1); Has 33373 Blast hits to 19493 proteins in 943 species: Archae - 38; Bacteria - 3212; Metazoa - 15688; Fungi - 4389; Plants - 5098; Viruses - 859; Other Eukaryotes - 4089 (source: NCBI BLink).  protein_id AT1G14650.1p  transcript_id AT1G14650.1  protein_id AT1G14650.1p  transcript_id AT1G14650.1  
At1g14650	chr1:005028077	0.0	W/5028077-5030176,5030263-5030520	AT1G14650.2  CDS  gene_syn T5E21.13, T5E21_13  go_process RNA processing|GO:0006396||IEA  go_process protein modification process|GO:0006464||IEA  go_function RNA binding|GO:0003723||IEA  go_process RNA processing|GO:0006396||ISS  go_function RNA binding|GO:0003723||ISS  product SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein  note SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; FUNCTIONS IN: RNA binding; INVOLVED IN: protein modification process, RNA processing; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061), Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (TAIR:AT1G14640.1); Has 33373 Blast hits to 19493 proteins in 943 species: Archae - 38; Bacteria - 3212; Metazoa - 15688; Fungi - 4389; Plants - 5098; Viruses - 859; Other Eukaryotes - 4089 (source: NCBI BLink).  protein_id AT1G14650.2p  transcript_id AT1G14650.2  protein_id AT1G14650.2p  transcript_id AT1G14650.2  
At1g14660	chr1:005036220	0.0	C/5036220-5036439,5036073-5036123,5035913-5036004,5035760-5035837,5035517-5035674,5035333-5035434,5035136-5035253,5034998-5035050,5034856-5034921,5034717-5034761,5034532-5034584,5034145-5034329,5033964-5034008,5033768-5033875,5033226-5033454,5032833-5033135,5032595-5032692,5032379-5032510,5032163-5032297	AT1G14660.1  CDS  gene_syn ATNHX8, F10B6.1, F10B6_1, NHX8, SODIUM HYDROGEN EXCHANGER 8  gene ATNHX8  function member of putative Na+/H+ antiporter (AtNHX) family. Functions as a plasma membrane Li+/H+ antiporter. Involved in Li+ efflux and detoxification.  go_component plasma membrane|GO:0005886|17270011|IDA  go_process sodium ion transport|GO:0006814|17270011|IGI  go_process sodium ion transport|GO:0006814||ISS  go_process lithium ion transport|GO:0010351|17270011|IGI  go_process lithium ion export|GO:0010352|17270011|IMP  go_function lithium:hydrogen antiporter activity|GO:0010348|17270011|IGI  go_function sodium ion transmembrane transporter activity|GO:0015081|17270011|IGI  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product ATNHX8; lithium:hydrogen antiporter/ sodium ion transmembrane transporter/ sodium:hydrogen antiporter  note ATNHX8; FUNCTIONS IN: sodium:hydrogen antiporter activity, sodium ion transmembrane transporter activity, lithium:hydrogen antiporter activity; INVOLVED IN: lithium ion transport, sodium ion transport, lithium ion export; LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger, conserved region (InterPro:IPR018422), Cation/H+ exchanger (InterPro:IPR006153), Na+/H+ exchanger, isoforms 7/8, conserved region (InterPro:IPR018418); BEST Arabidopsis thaliana protein match is: SOS1 (SALT OVERLY SENSITIVE 1); sodium:hydrogen antiporter (TAIR:AT2G01980.1); Has 4953 Blast hits to 4934 proteins in 1136 species: Archae - 78; Bacteria - 3109; Metazoa - 825; Fungi - 100; Plants - 263; Viruses - 0; Other Eukaryotes - 578 (source: NCBI BLink).  protein_id AT1G14660.1p  transcript_id AT1G14660.1  protein_id AT1G14660.1p  transcript_id AT1G14660.1  
At1g14670	chr1:005037669	0.0	W/5037669-5037820,5038100-5038140,5038249-5038834,5038911-5039048,5039159-5039315,5039411-5039895,5039980-5040199	AT1G14670.1  CDS  gene_syn F10B6.3, F10B6_3  go_component membrane|GO:0016020|17432890|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component integral to membrane|GO:0016021||ISS  go_process transport|GO:0006810||ISS  product endomembrane protein 70, putative  note endomembrane protein 70, putative; INVOLVED IN: transport; LOCATED IN: integral to membrane, Golgi apparatus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: endomembrane protein 70, putative (TAIR:AT2G01970.1); Has 1019 Blast hits to 989 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 444; Fungi - 153; Plants - 235; Viruses - 0; Other Eukaryotes - 187 (source: NCBI BLink).  protein_id AT1G14670.1p  transcript_id AT1G14670.1  protein_id AT1G14670.1p  transcript_id AT1G14670.1  
At1g14680	chr1:005040861	0.0	W/5040861-5041733	AT1G14680.1  CDS  gene_syn F10B6.4, F10B6_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09060.1); Has 7013 Blast hits to 5372 proteins in 466 species: Archae - 108; Bacteria - 388; Metazoa - 3676; Fungi - 303; Plants - 203; Viruses - 23; Other Eukaryotes - 2312 (source: NCBI BLink).  protein_id AT1G14680.1p  transcript_id AT1G14680.1  protein_id AT1G14680.1p  transcript_id AT1G14680.1  
At1g14685	chr1:005043086	0.0	W/5043086-5043925	AT1G14685.1  CDS  gene_syn ATBPC2, BASIC PENTACYSTEINE 2, BBR/BPC2, BPC2, F10B6.5, F10B6_5  gene BPC2  function Arabidopsis GBP Basic Penta Cysteine 1  go_component nucleus|GO:0005634|14731261|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|14731261|IPI  go_function DNA binding|GO:0003677|14731261|IPI  go_function transcription factor activity|GO:0003700|14731261|IPI  product BPC2 (BASIC PENTACYSTEINE 2); DNA binding / transcription factor  note BASIC PENTACYSTEINE 2 (BPC2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: BPC1 (BASIC PENTACYSTEINE1); DNA binding / specific transcriptional repressor/ transcription factor (TAIR:AT2G01930.2); Has 141 Blast hits to 141 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 123; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G14685.1p  transcript_id AT1G14685.1  protein_id AT1G14685.1p  transcript_id AT1G14685.1  
At1g14685	chr1:005043086	0.0	W/5043086-5043925	AT1G14685.2  CDS  gene_syn ATBPC2, BASIC PENTACYSTEINE 2, BBR/BPC2, BPC2, F10B6.5, F10B6_5  gene BPC2  function Arabidopsis GBP Basic Penta Cysteine 1  go_component nucleus|GO:0005634|14731261|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|14731261|IPI  go_function DNA binding|GO:0003677|14731261|IPI  go_function transcription factor activity|GO:0003700|14731261|IPI  product BPC2 (BASIC PENTACYSTEINE 2); DNA binding / transcription factor  note BASIC PENTACYSTEINE 2 (BPC2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: BPC1 (BASIC PENTACYSTEINE1); DNA binding / specific transcriptional repressor/ transcription factor (TAIR:AT2G01930.2); Has 141 Blast hits to 141 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 123; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G14685.2p  transcript_id AT1G14685.2  protein_id AT1G14685.2p  transcript_id AT1G14685.2  
At1g14685	chr1:005043086	0.0	W/5043086-5043925	AT1G14685.3  CDS  gene_syn ATBPC2, BASIC PENTACYSTEINE 2, BBR/BPC2, BPC2, F10B6.5, F10B6_5  gene BPC2  function Arabidopsis GBP Basic Penta Cysteine 1  go_component nucleus|GO:0005634|14731261|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|14731261|IPI  go_function DNA binding|GO:0003677|14731261|IPI  go_function transcription factor activity|GO:0003700|14731261|IPI  product BPC2 (BASIC PENTACYSTEINE 2); DNA binding / transcription factor  note BASIC PENTACYSTEINE 2 (BPC2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: BPC1 (BASIC PENTACYSTEINE1); DNA binding / specific transcriptional repressor/ transcription factor (TAIR:AT2G01930.2); Has 141 Blast hits to 141 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 123; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G14685.3p  transcript_id AT1G14685.3  protein_id AT1G14685.3p  transcript_id AT1G14685.3  
At1g14686	chr1:005045781	0.0	C/5045781-5046800	AT1G14686.1  CDS  go_component clathrin coat|GO:0030118||IEA  go_process clathrin coat assembly|GO:0048268||IEA  go_function phospholipid binding|GO:0005543||IEA  go_function phosphatidylinositol binding|GO:0005545||IEA  go_function clathrin binding|GO:0030276||IEA  go_function binding|GO:0005488||ISS  product epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related  note epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related; FUNCTIONS IN: phospholipid binding, clathrin binding, binding, phosphatidylinositol binding; INVOLVED IN: clathrin coat assembly; LOCATED IN: clathrin coat; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), Clathrin adaptor, phosphoinositide-binding, GAT-like (InterPro:IPR014712), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (TAIR:AT2G01920.1); Has 179 Blast hits to 158 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 177; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14686.1p  transcript_id AT1G14686.1  protein_id AT1G14686.1p  transcript_id AT1G14686.1  
At1g14687	chr1:005048046	0.0	W/5048046-5048552	AT1G14687.1  CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32, AtHB32  gene AtHB32  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677|16428600|ISS  go_function transcription factor activity|GO:0003700||ISS  product AtHB32 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32); DNA binding / transcription factor  note ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32 (AtHB32); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein Cys/His-rich dimerisation region (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: AtHB27 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 27); DNA binding / transcription factor (TAIR:AT5G42780.1); Has 294 Blast hits to 244 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 294; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14687.1p  transcript_id AT1G14687.1  protein_id AT1G14687.1p  transcript_id AT1G14687.1  
At1g14688	chr1:005050944	0.0	C/5050944-5050983,5050761-5050879,5050160-5050213,5049920-5050038,5049654-5049834	AT1G14688.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14688.1p  transcript_id AT1G14688.1  protein_id AT1G14688.1p  transcript_id AT1G14688.1  
At1g14690	chr1:005054859	0.0	C/5054859-5054936,5054386-5054589,5054025-5054294,5053710-5053925,5053467-5053622,5053216-5053375,5052976-5053127,5052819-5052906,5052667-5052740,5052518-5052592,5052090-5052428	AT1G14690.1  CDS  gene_syn F10B6.8, F10B6_8, MAP65-7, MICROTUBULE-ASSOCIATED PROTEIN 65-7  gene MAP65-7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MAP65-7 (MICROTUBULE-ASSOCIATED PROTEIN 65-7)  note MICROTUBULE-ASSOCIATED PROTEIN 65-7 (MAP65-7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: MAP65/ASE1 (InterPro:IPR007145); BEST Arabidopsis thaliana protein match is: ATMAP65-6; microtubule binding (TAIR:AT2G01910.1); Has 3089 Blast hits to 2642 proteins in 263 species: Archae - 41; Bacteria - 144; Metazoa - 1679; Fungi - 242; Plants - 221; Viruses - 6; Other Eukaryotes - 756 (source: NCBI BLink).  protein_id AT1G14690.1p  transcript_id AT1G14690.1  protein_id AT1G14690.1p  transcript_id AT1G14690.1  
At1g14690	chr1:005054859	0.0	C/5054859-5054936,5054386-5054589,5054025-5054294,5053710-5053925,5053467-5053622,5053216-5053375,5052976-5053127,5052819-5052906,5052667-5052740,5052518-5052592,5052090-5052428	AT1G14690.2  CDS  gene_syn F10B6.8, F10B6_8, MAP65-7, MICROTUBULE-ASSOCIATED PROTEIN 65-7  gene MAP65-7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MAP65-7 (MICROTUBULE-ASSOCIATED PROTEIN 65-7)  note MICROTUBULE-ASSOCIATED PROTEIN 65-7 (MAP65-7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: MAP65/ASE1 (InterPro:IPR007145); BEST Arabidopsis thaliana protein match is: ATMAP65-6; microtubule binding (TAIR:AT2G01910.1); Has 3089 Blast hits to 2642 proteins in 263 species: Archae - 41; Bacteria - 144; Metazoa - 1679; Fungi - 242; Plants - 221; Viruses - 6; Other Eukaryotes - 756 (source: NCBI BLink).  protein_id AT1G14690.2p  transcript_id AT1G14690.2  protein_id AT1G14690.2p  transcript_id AT1G14690.2  
At1g14700	chr1:005058680	0.0	W/5058680-5058967,5059473-5059629,5059726-5059833,5059930-5060057,5060361-5060489,5060584-5060651,5060766-5060988	AT1G14700.1  CDS  gene_syn ATPAP3, F10B6.10, F10B6_10, PAP3, PURPLE ACID PHOSPHATASE 3  gene PAP3  go_component vacuole|GO:0005773|15539469|IDA  go_function acid phosphatase activity|GO:0003993|16244908|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PAP3 (PURPLE ACID PHOSPHATASE 3); acid phosphatase/ protein serine/threonine phosphatase  note PURPLE ACID PHOSPHATASE 3 (PAP3); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: PAP8 (PURPLE ACID PHOSPHATASE 8); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT2G01890.1); Has 859 Blast hits to 854 proteins in 209 species: Archae - 0; Bacteria - 160; Metazoa - 324; Fungi - 6; Plants - 98; Viruses - 0; Other Eukaryotes - 271 (source: NCBI BLink).  protein_id AT1G14700.1p  transcript_id AT1G14700.1  protein_id AT1G14700.1p  transcript_id AT1G14700.1  
At1g14700	chr1:005058680	0.0	W/5058680-5058967,5059473-5059629,5059732-5059833,5059930-5060057,5060361-5060489,5060584-5060651,5060766-5060988	AT1G14700.2  CDS  gene_syn ATPAP3, F10B6.10, F10B6_10, PAP3, PURPLE ACID PHOSPHATASE 3  gene PAP3  go_function acid phosphatase activity|GO:0003993|16244908|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PAP3 (PURPLE ACID PHOSPHATASE 3); acid phosphatase/ protein serine/threonine phosphatase  note PURPLE ACID PHOSPHATASE 3 (PAP3); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: PAP8 (PURPLE ACID PHOSPHATASE 8); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT2G01890.1); Has 836 Blast hits to 831 proteins in 205 species: Archae - 0; Bacteria - 154; Metazoa - 323; Fungi - 6; Plants - 95; Viruses - 0; Other Eukaryotes - 258 (source: NCBI BLink).  protein_id AT1G14700.2p  transcript_id AT1G14700.2  protein_id AT1G14700.2p  transcript_id AT1G14700.2  
At1g14710	chr1:005064148	0.0	C/5064148-5064697,5063823-5063930,5063631-5063734,5063438-5063555,5063252-5063359,5063067-5063179,5062807-5062961,5062168-5062717	AT1G14710.1  CDS  gene_syn F10B6.11, F10B6_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G02940.1); Has 5735 Blast hits to 3206 proteins in 329 species: Archae - 2; Bacteria - 358; Metazoa - 1960; Fungi - 509; Plants - 1789; Viruses - 379; Other Eukaryotes - 738 (source: NCBI BLink).  protein_id AT1G14710.1p  transcript_id AT1G14710.1  protein_id AT1G14710.1p  transcript_id AT1G14710.1  
At1g14710	chr1:005064148	0.0	C/5064148-5064697,5063823-5063930,5063631-5063734,5063438-5063555,5063252-5063359,5063067-5063179,5062807-5062961,5062168-5062717	AT1G14710.2  CDS  gene_syn F10B6.11, F10B6_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G02940.1); Has 5735 Blast hits to 3206 proteins in 329 species: Archae - 2; Bacteria - 358; Metazoa - 1960; Fungi - 509; Plants - 1789; Viruses - 379; Other Eukaryotes - 738 (source: NCBI BLink).  protein_id AT1G14710.2p  transcript_id AT1G14710.2  protein_id AT1G14710.2p  transcript_id AT1G14710.2  
At1g14720	chr1:005068283	0.0	C/5068283-5068466,5068095-5068195,5067782-5067990,5066806-5067310	AT1G14720.1  CDS  gene_syn ATXTH28, ENDOXYLOGLUCAN TRANSFERASE A2, EXGT-A2, F10B6.12, F10B6_12, XTR2, XYLOGLUCAN ENDOTRANSGLYCOSYLASE RELATED 2, XYLOGLUCAN ENDOTRANSGLYCOSYLASE-RELATED PROTEIN  gene XTR2  function member of Glycoside Hydrolase Family 16  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process fruit development|GO:0010154|19139039|IMP  go_process stamen filament development|GO:0080086|19139039|IMP  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762|10557219|ISS  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product XTR2 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE RELATED 2); hydrolase, acting on glycosyl bonds / xyloglucan:xyloglucosyl transferase  note XYLOGLUCAN ENDOTRANSGLYCOSYLASE RELATED 2 (XTR2); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: fruit development, stamen filament development; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: EXGT-A3; hydrolase, acting on glycosyl bonds / xyloglucan:xyloglucosyl transferase (TAIR:AT2G01850.1); Has 1298 Blast hits to 1292 proteins in 202 species: Archae - 0; Bacteria - 175; Metazoa - 0; Fungi - 264; Plants - 795; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT1G14720.1p  transcript_id AT1G14720.1  protein_id AT1G14720.1p  transcript_id AT1G14720.1  
At1g14730	chr1:005073244	0.0	W/5073244-5073408,5073587-5073635,5073986-5074185,5074308-5074568	AT1G14730.1  CDS  gene_syn F10B6.13, F10B6_13  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  product unknown protein  note LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b561, eukaryote (InterPro:IPR004877), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593); BEST Arabidopsis thaliana protein match is: ACYB-1; carbon-monoxide oxygenase (TAIR:AT5G38630.1); Has 447 Blast hits to 446 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 321; Fungi - 5; Plants - 110; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G14730.1p  transcript_id AT1G14730.1  protein_id AT1G14730.1p  transcript_id AT1G14730.1  
At1g14740	chr1:005076007	0.0	C/5076007-5077732,5075450-5075925	AT1G14740.1  CDS  gene_syn F10B6.14, F10B6_14  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63500.2); Has 274 Blast hits to 273 proteins in 62 species: Archae - 3; Bacteria - 25; Metazoa - 56; Fungi - 9; Plants - 128; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT1G14740.1p  transcript_id AT1G14740.1  protein_id AT1G14740.1p  transcript_id AT1G14740.1  
At1g14750	chr1:005081404	0.0	C/5081404-5082423,5081047-5081214,5080631-5080797,5080205-5080333,5079936-5080116,5079798-5079842,5079674-5079700	AT1G14750.1  CDS  gene_syn F10B6.15, F10B6_15, SDS, SOLO DANCERS  gene SDS  function mutant shows aberrant homolog pairing in meiosis  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase activity|GO:0004693||ISS  product SDS (SOLO DANCERS); cyclin-dependent protein kinase  note SOLO DANCERS (SDS); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: shoot apex, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCB2;2 (Cyclin B2;2); cyclin-dependent protein kinase regulator (TAIR:AT4G35620.1); Has 2832 Blast hits to 2759 proteins in 277 species: Archae - 0; Bacteria - 38; Metazoa - 1460; Fungi - 334; Plants - 629; Viruses - 3; Other Eukaryotes - 368 (source: NCBI BLink).  protein_id AT1G14750.1p  transcript_id AT1G14750.1  protein_id AT1G14750.1p  transcript_id AT1G14750.1  
At1g14750	chr1:005082160	0.0	C/5082160-5082423,5081404-5081655,5081047-5081214,5080631-5080797,5080205-5080333,5079936-5080116,5079798-5079842,5079674-5079700	AT1G14750.2  CDS  gene_syn F10B6.15, F10B6_15, SDS, SOLO DANCERS  gene SDS  function mutant shows aberrant homolog pairing in meiosis  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase activity|GO:0004693||ISS  product SDS (SOLO DANCERS); cyclin-dependent protein kinase  note SOLO DANCERS (SDS); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: shoot apex, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCB2;2 (Cyclin B2;2); cyclin-dependent protein kinase regulator (TAIR:AT4G35620.1); Has 2658 Blast hits to 2654 proteins in 264 species: Archae - 0; Bacteria - 0; Metazoa - 1413; Fungi - 286; Plants - 629; Viruses - 3; Other Eukaryotes - 327 (source: NCBI BLink).  protein_id AT1G14750.2p  transcript_id AT1G14750.2  protein_id AT1G14750.2p  transcript_id AT1G14750.2  
At1g14755	chr1:005083765	0.0	W/5083765-5083825,5083923-5084098	AT1G14755.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14755.1p  transcript_id AT1G14755.1  protein_id AT1G14755.1p  transcript_id AT1G14755.1  
At1g14760	chr1:005085049	0.0	C/5085049-5085213,5084530-5084655	AT1G14760.3  CDS  gene_syn F10B6.16, F10B6_16, KNATM, KNOX ARABIDOPSIS THALIANA MEINOX  gene KNATM  product KNATM (KNOX ARABIDOPSIS THALIANA MEINOX)  note KNOX ARABIDOPSIS THALIANA MEINOX (KNATM); EXPRESSED IN: shoot apex, sepal; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: KNOX1 (InterPro:IPR005540).  protein_id AT1G14760.3p  transcript_id AT1G14760.3  protein_id AT1G14760.3p  transcript_id AT1G14760.3  
At1g14760	chr1:005085049	0.0	C/5085049-5085213,5084688-5084951	AT1G14760.1  CDS  gene_syn F10B6.16, F10B6_16, KNATM, KNOX ARABIDOPSIS THALIANA MEINOX  gene KNATM  go_component nucleus|GO:0005634|18398054|IDA  go_component cytoplasm|GO:0005737|18398054|IDA  go_process leaf proximal/distal pattern formation|GO:0010589|18398054|IMP  go_function transcription activator activity|GO:0016563|18398054|IDA  product KNATM (KNOX ARABIDOPSIS THALIANA MEINOX); transcription activator  note KNOX ARABIDOPSIS THALIANA MEINOX (KNATM); FUNCTIONS IN: transcription activator activity; INVOLVED IN: leaf proximal/distal pattern formation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: KNOX1 (InterPro:IPR005540); Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14760.1p  transcript_id AT1G14760.1  protein_id AT1G14760.1p  transcript_id AT1G14760.1  
At1g14760	chr1:005085049	0.0	C/5085049-5085213,5084826-5084951,5084530-5084655	AT1G14760.2  CDS  gene_syn F10B6.16, F10B6_16, KNATM, KNOX ARABIDOPSIS THALIANA MEINOX  gene KNATM  product KNATM (KNOX ARABIDOPSIS THALIANA MEINOX)  note KNOX ARABIDOPSIS THALIANA MEINOX (KNATM); EXPRESSED IN: shoot apex, sepal; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: KNOX1 (InterPro:IPR005540), KNOX2 (InterPro:IPR005541); BEST Arabidopsis thaliana protein match is: KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA); transcription factor (TAIR:AT4G08150.1).  protein_id AT1G14760.2p  transcript_id AT1G14760.2  protein_id AT1G14760.2p  transcript_id AT1G14760.2  
At1g14770	chr1:005088299	0.0	C/5088299-5088437,5088022-5088224,5087813-5087920,5086867-5087706	AT1G14770.1  CDS  gene_syn F10B6.17, F10B6_17  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: PHD finger protein-related (TAIR:AT1G68030.1); Has 45 Blast hits to 42 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 7; Plants - 23; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G14770.1p  transcript_id AT1G14770.1  protein_id AT1G14770.1p  transcript_id AT1G14770.1  
At1g14770	chr1:005088299	0.0	C/5088299-5088437,5088022-5088224,5087813-5087920,5086867-5087706	AT1G14770.2  CDS  gene_syn F10B6.17, F10B6_17  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: PHD finger protein-related (TAIR:AT1G68030.1); Has 45 Blast hits to 42 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 7; Plants - 23; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G14770.2p  transcript_id AT1G14770.2  protein_id AT1G14770.2p  transcript_id AT1G14770.2  
At1g14780	chr1:005091020	0.0	W/5091020-5091283,5091387-5091631,5092118-5092331,5092456-5092530,5092614-5092797,5092888-5093057,5093142-5093873	AT1G14780.1  CDS  gene_syn F10B6.18, F10B6_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Membrane attack complex component/perforin/complement C9 (InterPro:IPR001862); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24290.2); Has 119 Blast hits to 118 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14780.1p  transcript_id AT1G14780.1  protein_id AT1G14780.1p  transcript_id AT1G14780.1  
At1g14790	chr1:005095458	0.0	C/5095458-5097817,5095210-5095360,5094317-5095129	AT1G14790.1  CDS  gene_syn ATRDRP1, F10B6.19, F10B6_19, RDR1, RNA-DEPENDENT RNA POLYMERASE 1  gene RDR1  function Encodes RNA-dependent RNA polymerase. While not required for virus-induced post-transcriptional gene silencing (PTGS), it can promote turnover of viral RNAs in infected plants. Nomenclature according to Xie, et al. (2004). Involved in the production of Cucumber Mosaic Virus siRNAs.  go_process response to virus|GO:0009615|12650452|IMP  go_process response to salicylic acid stimulus|GO:0009751|15024409|IEP  go_process posttranscriptional gene silencing|GO:0016441||ISS  go_process positive regulation of posttranscriptional gene silencing|GO:0060148|17586651|IMP  go_function nucleic acid binding|GO:0003676||ISS  go_function RNA-directed RNA polymerase activity|GO:0003968||ISS  product RDR1 (RNA-DEPENDENT RNA POLYMERASE 1); RNA-directed RNA polymerase/ nucleic acid binding  note RNA-DEPENDENT RNA POLYMERASE 1 (RDR1); FUNCTIONS IN: RNA-directed RNA polymerase activity, nucleic acid binding; INVOLVED IN: positive regulation of posttranscriptional gene silencing, response to virus, posttranscriptional gene silencing, response to salicylic acid stimulus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-dependent RNA polymerase, eukaryotic-type (InterPro:IPR007855); BEST Arabidopsis thaliana protein match is: RDR2 (RNA-DEPENDENT RNA POLYMERASE 2); RNA-directed RNA polymerase (TAIR:AT4G11130.1); Has 366 Blast hits to 356 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 59; Fungi - 161; Plants - 112; Viruses - 2; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT1G14790.1p  transcript_id AT1G14790.1  protein_id AT1G14790.1p  transcript_id AT1G14790.1  
At1g14800	chr1:005099572	0.0	W/5099572-5099751,5099835-5100108,5100188-5100269,5100352-5100419,5100529-5100611,5100734-5100854,5101020-5101245,5102438-5102558	AT1G14800.1  CDS  gene_syn F10B6.21, F10B6_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G35280.1); Has 109 Blast hits to 109 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14800.1p  transcript_id AT1G14800.1  protein_id AT1G14800.1p  transcript_id AT1G14800.1  
At1g14810	chr1:005104073	0.0	C/5104073-5104633,5103874-5103960,5103728-5103772,5103537-5103632,5103339-5103440,5102847-5103001,5102684-5102765	AT1G14810.1  CDS  gene_syn F10B6.22, F10B6_22  function encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process amino acid metabolic process|GO:0006520||IEA  go_process metabolic process|GO:0008152||IEA  go_process amino acid biosynthetic process|GO:0008652||IEA  go_process methionine biosynthetic process|GO:0009086||IEA  go_process threonine biosynthetic process|GO:0009088||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process amino acid metabolic process|GO:0006520||ISS  go_function aspartate-semialdehyde dehydrogenase activity|GO:0004073|11812229|IDA  go_function oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor|GO:0016620||ISS  product semialdehyde dehydrogenase family protein  note semialdehyde dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, aspartate-semialdehyde dehydrogenase activity; INVOLVED IN: amino acid metabolic process, threonine biosynthetic process, amino acid biosynthetic process, methionine biosynthetic process, metabolic process; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Semialdehyde dehydrogenase, dimerisation region (InterPro:IPR012280), Semialdehyde dehydrogenase, NAD-binding (InterPro:IPR000534), NAD(P)-binding (InterPro:IPR016040), Aspartate-semialdehyde dehydrogenase, bacterial (InterPro:IPR005986), Aspartate-semialdehyde dehydrogenase (InterPro:IPR012080); Has 7207 Blast hits to 7207 proteins in 1375 species: Archae - 163; Bacteria - 3534; Metazoa - 2; Fungi - 109; Plants - 30; Viruses - 0; Other Eukaryotes - 3369 (source: NCBI BLink).  protein_id AT1G14810.1p  transcript_id AT1G14810.1  protein_id AT1G14810.1p  transcript_id AT1G14810.1  
At1g14820	chr1:005106163	0.0	C/5106163-5106454,5105888-5105924,5105683-5105800,5105487-5105597,5105237-5105398	AT1G14820.1  CDS  gene_syn F10B6.40, F10B6_40  go_component cellular_component|GO:0005575||ND  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  note SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative (TAIR:AT1G01630.1); Has 1082 Blast hits to 1082 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 275; Fungi - 311; Plants - 353; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).  protein_id AT1G14820.1p  transcript_id AT1G14820.1  protein_id AT1G14820.1p  transcript_id AT1G14820.1  
At1g14820	chr1:005106163	0.0	C/5106163-5106454,5105888-5105924,5105683-5105800,5105487-5105597,5105237-5105398	AT1G14820.2  CDS  gene_syn F10B6.40, F10B6_40  go_component cellular_component|GO:0005575||ND  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  note SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative (TAIR:AT1G01630.1); Has 1082 Blast hits to 1082 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 275; Fungi - 311; Plants - 353; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).  protein_id AT1G14820.2p  transcript_id AT1G14820.2  protein_id AT1G14820.2p  transcript_id AT1G14820.2  
At1g14820	chr1:005106722	0.0	C/5106722-5106793,5106163-5106421,5105888-5105924,5105683-5105800,5105487-5105597,5105237-5105398	AT1G14820.3  CDS  gene_syn F10B6.40, F10B6_40  go_component cellular_component|GO:0005575||ND  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  note SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative (TAIR:AT1G01630.1); Has 1147 Blast hits to 1147 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 327; Fungi - 313; Plants - 357; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).  protein_id AT1G14820.3p  transcript_id AT1G14820.3  protein_id AT1G14820.3p  transcript_id AT1G14820.3  
At1g14830	chr1:005111339	0.0	C/5111339-5111470,5111156-5111219,5110829-5110936,5110636-5110737,5110384-5110434,5110215-5110276,5109977-5110067,5109821-5109885,5109531-5109725,5109317-5109436,5109161-5109231,5108615-5108840,5108471-5108521,5108137-5108377,5107919-5108058,5107699-5107824	AT1G14830.1  CDS  gene_syn ADL1C, ADL5, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DRP1C, DYNAMIN RELATED PROTEIN 1C, DYNAMIN-LIKE PROTEIN 5, F10B6.23, F10B6_23  gene ADL1C  function Encodes a dynamin-like protein that is involved in mitochondrial morphogenesis and pollen development. Protein is localized as speckles in the cytoplasm, partially co-localizes with mitochondrial markers, cell plate of dividing cells, and the tip of root hairs, root cap cells, and expanding part of trichoblasts.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component cell cortex|GO:0005938|18344418|IDA  go_component cell plate|GO:0009504|12834397|IDA  go_process mitochondrial fission|GO:0000266|14523248|IMP  go_process mitochondrion organization|GO:0007005|14523248|IMP  go_process pollen maturation|GO:0010152|12834397|IMP  go_function GTPase activity|GO:0003924||ISS  go_function GTP binding|GO:0005525||ISS  product ADL1C (ARABIDOPSIS DYNAMIN-LIKE PROTEIN 1C); GTP binding / GTPase  note ARABIDOPSIS DYNAMIN-LIKE PROTEIN 1C (ADL1C); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: pollen maturation, mitochondrial fission, mitochondrion organization; LOCATED IN: cell cortex, plasma membrane, membrane, cell plate; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130), Dynamin, GTPase region (InterPro:IPR001401), Dynamin central region (InterPro:IPR000375); BEST Arabidopsis thaliana protein match is: ADL1E (ARABIDOPSIS DYNAMIN-LIKE 1E); GTP binding / GTPase (TAIR:AT3G60190.1); Has 2080 Blast hits to 2017 proteins in 244 species: Archae - 2; Bacteria - 27; Metazoa - 938; Fungi - 511; Plants - 324; Viruses - 0; Other Eukaryotes - 278 (source: NCBI BLink).  protein_id AT1G14830.1p  transcript_id AT1G14830.1  protein_id AT1G14830.1p  transcript_id AT1G14830.1  
At1g14840	chr1:005115110	0.0	C/5115110-5115299,5114919-5115004,5114654-5114719,5114402-5114572,5114125-5114295,5113863-5114018,5113612-5113758,5113432-5113503,5112825-5113352,5112542-5112729,5112415-5112454	AT1G14840.1  CDS  gene_syn ATMAP70-4, F10B6.24, F10B6_24, microtubule-associated proteins 70-4  gene ATMAP70-4  function Encodes a microtubule associated protein (MAP70-4). Expressed in all tissues.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component microtubule|GO:0005874|15860013|ISS  go_process cytoskeleton organization|GO:0007010|15860013|TAS  go_function microtubule binding|GO:0008017|15860013|ISS  product ATMAP70-4 (microtubule-associated proteins 70-4); microtubule binding  note microtubule-associated proteins 70-4 (ATMAP70-4); FUNCTIONS IN: microtubule binding; INVOLVED IN: cytoskeleton organization; LOCATED IN: microtubule, plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Myosin II heavy chain-like (InterPro:IPR009768); BEST Arabidopsis thaliana protein match is: ATMAP70-3 (microtubule-associated proteins 70-3); microtubule binding (TAIR:AT2G01750.1); Has 35523 Blast hits to 20964 proteins in 1282 species: Archae - 436; Bacteria - 3391; Metazoa - 19691; Fungi - 2541; Plants - 1360; Viruses - 197; Other Eukaryotes - 7907 (source: NCBI BLink).  protein_id AT1G14840.1p  transcript_id AT1G14840.1  protein_id AT1G14840.1p  transcript_id AT1G14840.1  
At1g14850	chr1:005123101	0.0	C/5123101-5123259,5122776-5122945,5122544-5122670,5122183-5122445,5120429-5122058,5120115-5120327,5119783-5120030,5119100-5119475,5118643-5118839,5118150-5118507,5117564-5117782,5117152-5117477,5116921-5117029	AT1G14850.1  CDS  gene_syn F10B6.25, F10B6_25, NUP155  gene NUP155  function Encodes a protein similar to nucleoporin, a a major component of the nuclear pore complex (NPC) involved in cellular nucleo-cytoplasmic transport  go_component nucleolus|GO:0005730|15496452|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component nuclear pore|GO:0005643|12034489|ISS  go_component plasma membrane|GO:0005886|16618929|IDA  go_process nucleocytoplasmic transport|GO:0006913|12034489|ISS  go_function nucleocytoplasmic transporter activity|GO:0005487|12034489|ISS  product NUP155; nucleocytoplasmic transporter  note NUP155; FUNCTIONS IN: nucleocytoplasmic transporter activity; INVOLVED IN: nucleocytoplasmic transport; LOCATED IN: nucleolus, plasma membrane, chloroplast, nuclear pore; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoporin, non-repetitive/WGA-negative (InterPro:IPR004870); Has 307 Blast hits to 273 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 133; Fungi - 105; Plants - 36; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT1G14850.1p  transcript_id AT1G14850.1  protein_id AT1G14850.1p  transcript_id AT1G14850.1  
At1g14860	chr1:005124993	0.0	W/5124993-5125063,5125138-5125243,5125359-5125442,5125536-5125805	AT1G14860.1  CDS  gene_syn Arabidopsis thaliana Nudix hydrolase homolog 18, F10B6.26, F10B6_26, atnudt18  gene atnudt18  go_function hydrolase activity|GO:0016787||IEA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product atnudt18 (Arabidopsis thaliana Nudix hydrolase homolog 18); hydrolase  note Arabidopsis thaliana Nudix hydrolase homolog 18 (atnudt18); FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), NUDIX hydrolase, core (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: atnudt17 (Arabidopsis thaliana Nudix hydrolase homolog 17); hydrolase (TAIR:AT2G01670.1); Has 654 Blast hits to 652 proteins in 183 species: Archae - 0; Bacteria - 168; Metazoa - 195; Fungi - 79; Plants - 132; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT1G14860.1p  transcript_id AT1G14860.1  protein_id AT1G14860.1p  transcript_id AT1G14860.1  
At1g14870	chr1:005129371	0.0	C/5129371-5129458,5129094-5129165,5128790-5129002,5128591-5128676	AT1G14870.1  CDS  gene_syn F10B6.27, F10B6_27  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: plasma membrane; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: EGF-type aspartate/asparagine hydroxylation conserved site (InterPro:IPR000152), Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35525.1); Has 492 Blast hits to 491 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 93; Fungi - 76; Plants - 297; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G14870.1p  transcript_id AT1G14870.1  protein_id AT1G14870.1p  transcript_id AT1G14870.1  
At1g14880	chr1:005133579	0.0	C/5133579-5133663,5133302-5133373,5132989-5133201,5132791-5132876	AT1G14880.1  CDS  gene_syn F10B6.29, F10B6_29  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14870.1); Has 485 Blast hits to 484 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 72; Plants - 293; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G14880.1p  transcript_id AT1G14880.1  protein_id AT1G14880.1p  transcript_id AT1G14880.1  
At1g14890	chr1:005137045	0.0	W/5137045-5137704	AT1G14890.1  CDS  gene_syn F10B6.30, F10B6_30  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor  note enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT2G01610.1); Has 402 Blast hits to 397 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 402; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14890.1p  transcript_id AT1G14890.1  protein_id AT1G14890.1p  transcript_id AT1G14890.1  
At1g14900	chr1:005139270	0.0	C/5139270-5139353,5138665-5139195	AT1G14900.1  CDS  gene_syn F10B6.31, F10B6_31, HIGH MOBILITY GROUP A, HMGA  gene HMGA  function Encodes a protein belonging to the subgroup of HMGA (high mobility group A) proteins that interact with A/T-rich stretches of DNA.  go_process nucleosome assembly|GO:0006334||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nuclear chromatin|GO:0000790|17114349|IDA  go_component nucleus|GO:0005634|17114349|IDA  go_component nucleus|GO:0005634||ISS  go_component cytosol|GO:0005829|17114349|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677|17114349|IDA  go_function DNA binding|GO:0003677||ISS  product HMGA (HIGH MOBILITY GROUP A); DNA binding  note HIGH MOBILITY GROUP A (HMGA); FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, nucleosome assembly; LOCATED IN: nuclear chromatin, cytosol, nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), AT hook, DNA-binding, conserved site (InterPro:IPR017956), High mobility group, HMG-I and HMG-Y (InterPro:IPR000116), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: HON5 (High Mobility Group Family A 5); DNA binding (TAIR:AT1G48620.1); Has 1042 Blast hits to 933 proteins in 178 species: Archae - 0; Bacteria - 95; Metazoa - 366; Fungi - 136; Plants - 358; Viruses - 9; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT1G14900.1p  transcript_id AT1G14900.1  protein_id AT1G14900.1p  transcript_id AT1G14900.1  
At1g14910	chr1:005143482	0.0	C/5143482-5143571,5143288-5143357,5143093-5143190,5142721-5142859,5142476-5142603,5142298-5142390,5142124-5142174,5141927-5141992,5141771-5141836,5141616-5141696,5141445-5141525,5141172-5141354,5141005-5141083,5140801-5140916,5139928-5140665	AT1G14910.1  CDS  gene_syn F10B6.32, F10B6_32  go_component mitochondrion|GO:0005739||IEA  go_component clathrin coat|GO:0030118||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process clathrin coat assembly|GO:0048268||IEA  go_function phospholipid binding|GO:0005543||IEA  go_function phosphatidylinositol binding|GO:0005545||IEA  go_function clathrin binding|GO:0030276||IEA  go_function binding|GO:0005488||ISS  product epsin N-terminal homology (ENTH) domain-containing protein  note epsin N-terminal homology (ENTH) domain-containing protein; FUNCTIONS IN: phospholipid binding, clathrin binding, binding, phosphatidylinositol binding; INVOLVED IN: N-terminal protein myristoylation, clathrin coat assembly; LOCATED IN: clathrin coat, mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942), Clathrin adaptor, phosphoinositide-binding, GAT-like (InterPro:IPR014712); BEST Arabidopsis thaliana protein match is: epsin N-terminal homology (ENTH) domain-containing protein (TAIR:AT2G01600.1); Has 1079 Blast hits to 917 proteins in 171 species: Archae - 2; Bacteria - 57; Metazoa - 439; Fungi - 204; Plants - 279; Viruses - 2; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT1G14910.1p  transcript_id AT1G14910.1  protein_id AT1G14910.1p  transcript_id AT1G14910.1  
At1g14920	chr1:005149414	0.0	W/5149414-5151015	AT1G14920.1  CDS  gene_syn F10B6.34, F10B6_34, GAI, GAI PROTEIN, GIBBERELLIC ACID INSENSITIVE, RESTORATION ON GROWTH ON AMMONIA 2, RGA2  gene GAI  function Similar to a putative transcription factor and transcriptional coactivators. Repressor of GA responses and involved in gibberellic acid mediated signaling. Member of the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. GAI may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA.  go_component nucleus|GO:0005634|10421366|TAS  go_component nucleus|GO:0005634|10713441|ISS  go_component nucleus|GO:0005634|12492836|IDA  go_process regulation of nitrogen utilization|GO:0006808|9237632|IMP  go_process response to salt stress|GO:0009651|16400150|IGI  go_process response to ethylene stimulus|GO:0009723|16400150|IGI  go_process response to abscisic acid stimulus|GO:0009737|16400150|IGI  go_process response to gibberellin stimulus|GO:0009739|17333251|IEP  go_process gibberellic acid mediated signaling|GO:0009740|10421366|TAS  go_process seed germination|GO:0009845|17141619|IGI  go_process salicylic acid mediated signaling pathway|GO:0009863|18450451|IGI  go_process jasmonic acid mediated signaling pathway|GO:0009867|18450451|IGI  go_process negative regulation of gibberellic acid mediated signaling|GO:0009938|11925042|TAS  go_process negative regulation of gibberellic acid mediated signaling|GO:0009938|17416730|IMP  go_process seed dormancy|GO:0010162|17141619|IGI  go_process negative regulation of seed germination|GO:0010187|17449805|IGI  go_process response to far red light|GO:0010218|17449805|IEP  go_process phloem transport|GO:0010233|15773853|IMP  go_process hyperosmotic salinity response|GO:0042538|16400150|IGI  go_process regulation of oxygen and reactive oxygen species metabolic process|GO:0080010|18450450|IGI  go_function transcription factor activity|GO:0003700|10421366|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11487693|ISS  go_function transcription factor activity|GO:0003700|9237632|ISS  product GAI (GIBBERELLIC ACID INSENSITIVE); transcription factor  note GIBBERELLIC ACID INSENSITIVE (GAI); FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 16 processes; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: RGA1 (REPRESSOR OF GA1-3 1); protein binding / transcription factor (TAIR:AT2G01570.1); Has 1598 Blast hits to 1557 proteins in 199 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 1594; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14920.1p  transcript_id AT1G14920.1  protein_id AT1G14920.1p  transcript_id AT1G14920.1  
At1g14930	chr1:005152849	0.0	C/5152849-5153035,5152465-5152745	AT1G14930.1  CDS  gene_syn F10B6.35, F10B6_35  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product major latex protein-related / MLP-related  note major latex protein-related / MLP-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: major latex protein-related / MLP-related (TAIR:AT1G14940.1); Has 239 Blast hits to 218 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 239; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14930.1p  transcript_id AT1G14930.1  protein_id AT1G14930.1p  transcript_id AT1G14930.1  
At1g14940	chr1:005155326	0.0	C/5155326-5155512,5154775-5155055	AT1G14940.1  CDS  gene_syn F10B6.37, F10B6_37  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product major latex protein-related / MLP-related  note major latex protein-related / MLP-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: major latex protein-related / MLP-related (TAIR:AT1G14930.1); Has 223 Blast hits to 201 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 223; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14940.1p  transcript_id AT1G14940.1  protein_id AT1G14940.1p  transcript_id AT1G14940.1  
At1g14950	chr1:005157958	0.0	C/5157958-5158144,5157588-5157868	AT1G14950.1  CDS  gene_syn F10B6.38, F10B6_38  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product major latex protein-related / MLP-related  note major latex protein-related / MLP-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: seed; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: major latex protein-related / MLP-related (TAIR:AT1G14930.1); Has 236 Blast hits to 216 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 236; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14950.1p  transcript_id AT1G14950.1  protein_id AT1G14950.1p  transcript_id AT1G14950.1  
At1g14960	chr1:005159806	0.0	C/5159806-5159992,5159334-5159608	AT1G14960.1  CDS  gene_syn F10B6.39, F10B6_39  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product major latex protein-related / MLP-related  note major latex protein-related / MLP-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: major latex protein-related / MLP-related (TAIR:AT1G14950.1); Has 230 Blast hits to 208 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 230; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14960.1p  transcript_id AT1G14960.1  protein_id AT1G14960.1p  transcript_id AT1G14960.1  
At1g14970	chr1:005164537	0.0	C/5164537-5164917,5164278-5164347,5164106-5164173,5163902-5163990,5163606-5163803,5163269-5163473,5162974-5163141,5162596-5162763,5162329-5162519,5162085-5162235	AT1G14970.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01480.1); Has 431 Blast hits to 424 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 431; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14970.1p  transcript_id AT1G14970.1  protein_id AT1G14970.1p  transcript_id AT1G14970.1  
At1g14980	chr1:005166550	0.0	C/5166550-5166654,5166324-5166463,5165930-5165981	AT1G14980.1  CDS  gene_syn CHAPERONIN 10, CPN10, MITOCHONDRIAL CHAPERONIN 10, T15D22.2, T15D22_2  gene CPN10  function Encodes mitochondrial-localized chaperonin 10 that complements the E.coli groES mutant. Its mRNA is upregulated in response to heat shock treatment and is expressed uniformly in various organs.  go_component mitochondrion|GO:0005739|18385124|IDA  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|9011092|IDA  go_process protein folding|GO:0006457|9011092|IGI  go_process response to heat|GO:0009408|9011092|IEP  go_function chaperone binding|GO:0051087|9011092|ISS  product CPN10 (CHAPERONIN 10); chaperone binding  note CHAPERONIN 10 (CPN10); FUNCTIONS IN: chaperone binding; INVOLVED IN: protein folding, response to heat; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Chaperonin Cpn10, conserved site (InterPro:IPR018369), Chaperonin Cpn10 (InterPro:IPR001476); BEST Arabidopsis thaliana protein match is: 10 kDa chaperonin, putative (TAIR:AT1G23100.1); Has 6432 Blast hits to 6359 proteins in 1674 species: Archae - 6; Bacteria - 3682; Metazoa - 251; Fungi - 75; Plants - 211; Viruses - 2; Other Eukaryotes - 2205 (source: NCBI BLink).  protein_id AT1G14980.1p  transcript_id AT1G14980.1  protein_id AT1G14980.1p  transcript_id AT1G14980.1  
At1g14990	chr1:005168033	0.0	C/5168033-5168151,5167798-5167879,5167586-5167702,5167354-5167404	AT1G14990.1  CDS  gene_syn T15D22.3, T15D22_3  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 17 Blast hits to 17 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14990.1p  transcript_id AT1G14990.1  protein_id AT1G14990.1p  transcript_id AT1G14990.1  
At1g15000	chr1:005168613	0.0	W/5168613-5169947	AT1G15000.1  CDS  gene_syn T15D22.4, T15D22_4, scpl50, serine carboxypeptidase-like 50  gene scpl50  go_component vacuole|GO:0005773|15539469|IDA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl50 (serine carboxypeptidase-like 50); serine-type carboxypeptidase  note serine carboxypeptidase-like 50 (scpl50); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl48 (serine carboxypeptidase-like 48); serine-type carboxypeptidase (TAIR:AT3G45010.1); Has 2538 Blast hits to 2426 proteins in 320 species: Archae - 0; Bacteria - 215; Metazoa - 624; Fungi - 565; Plants - 842; Viruses - 0; Other Eukaryotes - 292 (source: NCBI BLink).  protein_id AT1G15000.1p  transcript_id AT1G15000.1  protein_id AT1G15000.1p  transcript_id AT1G15000.1  
At1g15010	chr1:005171215	0.0	W/5171215-5171643	AT1G15010.1  CDS  gene_syn T15D22.5, T15D22_5  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01300.1); Has 43 Blast hits to 42 proteins in 8 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15010.1p  transcript_id AT1G15010.1  protein_id AT1G15010.1p  transcript_id AT1G15010.1  
At1g15015	chr1:005172340	0.0	W/5172340-5172822	AT1G15015.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box protein-related / SLF-related (TAIR:AT5G10340.1); Has 147 Blast hits to 147 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G15015.1p  transcript_id AT1G15015.1  protein_id AT1G15015.1p  transcript_id AT1G15015.1  
At1g15020	chr1:005175894	0.0	C/5175894-5176105,5175639-5175663,5175464-5175556,5175100-5175281,5174867-5174930,5174703-5174771,5174545-5174621,5174315-5174459,5174180-5174220,5173945-5174091,5173341-5173872	AT1G15020.2  CDS  gene_syn ATQSOX1, QSO2, QUIESCIN-SULFHYDRYL OXIDASE 1, T15D22.7, T15D22_7  gene ATQSOX1  function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the quiescin-sulfhydryl oxidase (QSOX) family, which possess an Erv1-like domain at the COOH terminus in addition to a TRX domain.  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function thiol oxidase activity|GO:0016972||IEA  go_process response to cation stress|GO:0043157|17568770|IMP  product thioredoxin family protein  note QUIESCIN-SULFHYDRYL OXIDASE 1 (ATQSOX1); FUNCTIONS IN: thiol oxidase activity, protein binding, zinc ion binding; INVOLVED IN: response to cation stress; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Zinc finger, RING-type (InterPro:IPR001841), Erv1/Alr (InterPro:IPR006863), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), ERV/ALR sulphydryl oxidase (InterPro:IPR017905), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: AtQSOX2 (quiescin-sulfhydryl oxidase 2); thiol oxidase (TAIR:AT2G01270.1); Has 1824 Blast hits to 1505 proteins in 220 species: Archae - 2; Bacteria - 17; Metazoa - 1093; Fungi - 210; Plants - 281; Viruses - 0; Other Eukaryotes - 221 (source: NCBI BLink).  protein_id AT1G15020.2p  transcript_id AT1G15020.2  protein_id AT1G15020.2p  transcript_id AT1G15020.2  
At1g15020	chr1:005175894	0.0	C/5175894-5176105,5175639-5175663,5175464-5175556,5175100-5175281,5174867-5174930,5174703-5174771,5174545-5174621,5174315-5174459,5174180-5174220,5173945-5174091,5173441-5173872,5173246-5173267	AT1G15020.1  CDS  gene_syn ATQSOX1, QSO2, QUIESCIN-SULFHYDRYL OXIDASE 1, T15D22.7, T15D22_7  gene ATQSOX1  function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the quiescin-sulfhydryl oxidase (QSOX) family, which possess an Erv1-like domain at the COOH terminus in addition to a TRX domain.  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function thiol oxidase activity|GO:0016972||IEA  go_process response to cation stress|GO:0043157|17568770|IMP  product thioredoxin family protein  note QUIESCIN-SULFHYDRYL OXIDASE 1 (ATQSOX1); FUNCTIONS IN: protein binding, thiol oxidase activity, zinc ion binding; INVOLVED IN: response to cation stress; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Zinc finger, RING-type (InterPro:IPR001841), Erv1/Alr (InterPro:IPR006863), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), ERV/ALR sulphydryl oxidase (InterPro:IPR017905), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: AtQSOX2 (quiescin-sulfhydryl oxidase 2); thiol oxidase (TAIR:AT2G01270.1); Has 1824 Blast hits to 1505 proteins in 220 species: Archae - 2; Bacteria - 17; Metazoa - 1093; Fungi - 210; Plants - 281; Viruses - 0; Other Eukaryotes - 221 (source: NCBI BLink).  protein_id AT1G15020.1p  transcript_id AT1G15020.1  protein_id AT1G15020.1p  transcript_id AT1G15020.1  
At1g15030	chr1:005177895	0.0	W/5177895-5178095,5178177-5178400,5178512-5178761,5179208-5179293,5179379-5179470,5179624-5179853	AT1G15030.1  CDS  gene_syn T15D22.8, T15D22_8  function Encodes a Cysteine-rich peptide (CRP) family protein  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01260.1); Has 150 Blast hits to 149 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G15030.1p  transcript_id AT1G15030.1  protein_id AT1G15030.1p  transcript_id AT1G15030.1  
At1g15040	chr1:005180314	0.0	C/5180314-5181315	AT1G15040.2  CDS  gene_syn T15D22.12, T15D22_12  go_process glutamine metabolic process|GO:0006541||IEA  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  product glutamine amidotransferase-related  note glutamine amidotransferase-related; FUNCTIONS IN: hydrolase activity; INVOLVED IN: glutamine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Peptidase C26 (InterPro:IPR011697), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: hydrolase (TAIR:AT1G66860.1); Has 2198 Blast hits to 2197 proteins in 608 species: Archae - 19; Bacteria - 1488; Metazoa - 2; Fungi - 6; Plants - 26; Viruses - 0; Other Eukaryotes - 657 (source: NCBI BLink).  protein_id AT1G15040.2p  transcript_id AT1G15040.2  protein_id AT1G15040.2p  transcript_id AT1G15040.2  
At1g15040	chr1:005180395	0.0	C/5180395-5181315,5180038-5180304	AT1G15040.1  CDS  gene_syn T15D22.12, T15D22_12  go_process glutamine metabolic process|GO:0006541||IEA  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  product glutamine amidotransferase-related  note glutamine amidotransferase-related; FUNCTIONS IN: hydrolase activity; INVOLVED IN: glutamine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Peptidase C26 (InterPro:IPR011697), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: hydrolase (TAIR:AT5G38200.1); Has 2200 Blast hits to 2199 proteins in 608 species: Archae - 19; Bacteria - 1490; Metazoa - 2; Fungi - 6; Plants - 26; Viruses - 0; Other Eukaryotes - 657 (source: NCBI BLink).  protein_id AT1G15040.1p  transcript_id AT1G15040.1  protein_id AT1G15040.1p  transcript_id AT1G15040.1  
At1g15045	chr1:005181857	0.0	W/5181857-5181964	AT1G15045.1  CDS  gene_syn T15D22.9, T15D22_9  function hypothetical protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G15045.1p  transcript_id AT1G15045.1  protein_id AT1G15045.1p  transcript_id AT1G15045.1  
At1g15050	chr1:005183157	0.0	C/5183157-5183243,5182854-5183007,5182605-5182745,5182396-5182504,5182256-5182322	AT1G15050.1  CDS  gene_syn IAA34, INDOLE-3-ACETIC ACID INDUCIBLE 34, T15D22.10, T15D22_10  gene IAA34  function Belongs to auxin inducible gene family.  go_component nucleus|GO:0005634||IEA  go_process response to auxin stimulus|GO:0009733|12036262|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product IAA34 (INDOLE-3-ACETIC ACID INDUCIBLE 34); transcription factor  note INDOLE-3-ACETIC ACID INDUCIBLE 34 (IAA34); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to auxin stimulus; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA32 (INDOLE-3-ACETIC ACID INDUCIBLE 32); transcription factor (TAIR:AT2G01200.2); Has 857 Blast hits to 857 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 857; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15050.1p  transcript_id AT1G15050.1  protein_id AT1G15050.1p  transcript_id AT1G15050.1  
At1g15060	chr1:005186584	0.0	C/5186584-5186856,5186415-5186492,5185609-5186283,5185419-5185521,5185241-5185341,5184963-5185137,5184591-5184761,5184229-5184329,5184053-5184112	AT1G15060.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  product unknown protein  note LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031088, alpha/beta hydrolase, At1g15070 (InterPro:IPR016969); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G73750.1); Has 120 Blast hits to 104 proteins in 29 species: Archae - 0; Bacteria - 61; Metazoa - 1; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G15060.1p  transcript_id AT1G15060.1  protein_id AT1G15060.1p  transcript_id AT1G15060.1  
At1g15080	chr1:005188080	0.0	W/5188080-5188295,5188384-5188471,5188560-5188669,5188748-5188841,5188923-5189111,5189205-5189264,5189361-5189476	AT1G15080.1  CDS  gene_syn ATLPP2, ATPAP2, F9L1.2, F9L1_2, LIPID PHOSPHATE PHOSPHATASE 2, LPP2, PHOSPHATIDIC ACID PHOSPHATASE 2  gene LPP2  function Encodes phosphatidic acid phosphatase. Involved in ABA signaling. Functions as a negative regulator upstream of ABI4. Expressed during germination and seed development. Expressed overall in young seedlings, in roots, hypocotyls, and vascular cells of cotyledons and leaves of 10 day-old seedlings, in flower filaments and stem elongation zones. Not expressed in anthers, pollen nor petals.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component integral to plasma membrane|GO:0005887|15960620|ISS  go_process abscisic acid mediated signaling|GO:0009738|15960620|IGI  go_function acid phosphatase activity|GO:0003993|16244908|ISS  go_function phosphatidate phosphatase activity|GO:0008195|11278556|IDA  go_function phosphatidate phosphatase activity|GO:0008195||ISS  product LPP2 (LIPID PHOSPHATE PHOSPHATASE 2); acid phosphatase/ phosphatidate phosphatase  note LIPID PHOSPHATE PHOSPHATASE 2 (LPP2); FUNCTIONS IN: phosphatidate phosphatase activity, acid phosphatase activity; INVOLVED IN: abscisic acid mediated signaling; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: LPP3 (LIPID PHOSPHATE PHOSPHATASE 3); phosphatidate phosphatase (TAIR:AT3G02600.5); Has 1529 Blast hits to 1526 proteins in 228 species: Archae - 8; Bacteria - 150; Metazoa - 807; Fungi - 258; Plants - 117; Viruses - 2; Other Eukaryotes - 187 (source: NCBI BLink).  protein_id AT1G15080.1p  transcript_id AT1G15080.1  protein_id AT1G15080.1p  transcript_id AT1G15080.1  
At1g15090	chr1:005189687	0.0	C/5189687-5189760	AT1G15090.1  tRNA  gene_syn 51439.TRNA-ASN-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asn (anticodon: GTT)  transcript_id AT1G15090.1  
At1g15100	chr1:005193703	0.0	C/5193703-5194170	AT1G15100.1  CDS  gene_syn RHA2A, RING-H2 FINGER PROTEIN RHA2A  gene RHA2A  function Encodes a putative RING-H2 finger protein RHA2a.  go_component endomembrane system|GO:0012505||IEA  go_process response to salt stress|GO:0009651|19286935|IMP  go_process positive regulation of abscisic acid mediated signaling|GO:0009789|19286935|IMP  go_process regulation of response to osmotic stress|GO:0047484|19286935|IMP  go_function ubiquitin-protein ligase activity|GO:0004842|19286935|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product RHA2A; protein binding / ubiquitin-protein ligase/ zinc ion binding  note RHA2A; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: response to salt stress, positive regulation of abscisic acid mediated signaling, regulation of response to osmotic stress; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: RHA2B (RING-H2 FINGER PROTEIN 2B); protein binding / ubiquitin-protein ligase/ zinc ion binding (TAIR:AT2G01150.1); Has 5834 Blast hits to 5817 proteins in 195 species: Archae - 0; Bacteria - 0; Metazoa - 1922; Fungi - 442; Plants - 2489; Viruses - 11; Other Eukaryotes - 970 (source: NCBI BLink).  protein_id AT1G15100.1p  transcript_id AT1G15100.1  protein_id AT1G15100.1p  transcript_id AT1G15100.1  
At1g15110	chr1:005199594	0.0	W/5199594-5199754,5199841-5199906,5200005-5200064,5200178-5200268,5200382-5200436,5200523-5200602,5200688-5200804,5200908-5200992,5201081-5201172,5201254-5201507,5201593-5201681,5201781-5201908	AT1G15110.1  CDS  gene_syn F9L1.4, F9L1_4  go_process phosphatidylserine biosynthetic process|GO:0006659||IEA  go_component cellular_component|GO:0005575||ND  go_process phosphatidylserine biosynthetic process|GO:0006659||ISS  go_function CDP-diacylglycerol-serine O-phosphatidyltransferase activity|GO:0003882||ISS  product phosphatidyl serine synthase family protein  note phosphatidyl serine synthase family protein; FUNCTIONS IN: CDP-diacylglycerol-serine O-phosphatidyltransferase activity; INVOLVED IN: phosphatidylserine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidyl serine synthase (InterPro:IPR004277); Has 247 Blast hits to 246 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 158; Fungi - 4; Plants - 30; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT1G15110.1p  transcript_id AT1G15110.1  protein_id AT1G15110.1p  transcript_id AT1G15110.1  
At1g15110	chr1:005199594	0.0	W/5199594-5199754,5199841-5199906,5200005-5200064,5200178-5200268,5200382-5200436,5200523-5200602,5200688-5200804,5200908-5200992,5201081-5201172,5201254-5201507,5201593-5201685,5201781-5201988	AT1G15110.2  CDS  gene_syn F9L1.4, F9L1_4  go_process phosphatidylserine biosynthetic process|GO:0006659||IEA  go_component cellular_component|GO:0005575||ND  go_process phosphatidylserine biosynthetic process|GO:0006659||ISS  go_function CDP-diacylglycerol-serine O-phosphatidyltransferase activity|GO:0003882||ISS  product phosphatidyl serine synthase family protein  note phosphatidyl serine synthase family protein; FUNCTIONS IN: CDP-diacylglycerol-serine O-phosphatidyltransferase activity; INVOLVED IN: phosphatidylserine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidyl serine synthase (InterPro:IPR004277); Has 247 Blast hits to 246 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 158; Fungi - 4; Plants - 30; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT1G15110.2p  transcript_id AT1G15110.2  protein_id AT1G15110.2p  transcript_id AT1G15110.2  
At1g15120	chr1:005202648	0.0	W/5202648-5202772,5202871-5202920,5203065-5203092,5203484-5203568,5203683-5203772,5203828-5203950	AT1G15120.2  CDS  gene_syn F9L1.5, F9L1_5  go_process mitochondrial electron transport, ubiquinol to cytochrome c|GO:0006122||IEA  go_function ubiquinol-cytochrome-c reductase activity|GO:0008121||IEA  go_component mitochondrial respiratory chain complex III|GO:0005750||ISS  go_process mitochondrial electron transport, ubiquinol to cytochrome c|GO:0006122||ISS  go_function ubiquinol-cytochrome-c reductase activity|GO:0008121||ISS  product ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative  note ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative; FUNCTIONS IN: ubiquinol-cytochrome-c reductase activity; INVOLVED IN: mitochondrial electron transport, ubiquinol to cytochrome c; LOCATED IN: mitochondrial respiratory chain complex III; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquinol-cytochrome C reductase hinge (InterPro:IPR003422); BEST Arabidopsis thaliana protein match is: ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative (TAIR:AT2G01090.1).  protein_id AT1G15120.2p  transcript_id AT1G15120.2  protein_id AT1G15120.2p  transcript_id AT1G15120.2  
At1g15120	chr1:005203091	0.0	W/5203091-5203092,5203484-5203568,5203683-5203772,5203865-5203897	AT1G15120.1  CDS  gene_syn F9L1.5, F9L1_5  go_component mitochondrion|GO:0005739|15276431|IDA  go_process mitochondrial electron transport, ubiquinol to cytochrome c|GO:0006122||IEA  go_function ubiquinol-cytochrome-c reductase activity|GO:0008121||IEA  go_component mitochondrial respiratory chain complex III|GO:0005750||ISS  go_process mitochondrial electron transport, ubiquinol to cytochrome c|GO:0006122||ISS  go_function ubiquinol-cytochrome-c reductase activity|GO:0008121||ISS  product ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative  note ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative; FUNCTIONS IN: ubiquinol-cytochrome-c reductase activity; INVOLVED IN: mitochondrial electron transport, ubiquinol to cytochrome c; LOCATED IN: mitochondrion, mitochondrial respiratory chain complex III; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquinol-cytochrome C reductase hinge (InterPro:IPR003422); BEST Arabidopsis thaliana protein match is: ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative (TAIR:AT2G01090.1); Has 294 Blast hits to 294 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 34; Plants - 50; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT1G15120.1p  transcript_id AT1G15120.1  protein_id AT1G15120.1p  transcript_id AT1G15120.1  
At1g15125	chr1:005204625	0.0	W/5204625-5204675,5204758-5205049,5205126-5205490,5205565-5205912	AT1G15125.1  CDS  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757||ISS  product S-adenosylmethionine-dependent methyltransferase/ methyltransferase  note S-adenosylmethionine-dependent methyltransferase/ methyltransferase; FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine:carboxyl methyltransferase family protein (TAIR:AT1G68040.1); Has 579 Blast hits to 569 proteins in 97 species: Archae - 0; Bacteria - 48; Metazoa - 12; Fungi - 3; Plants - 445; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT1G15125.1p  transcript_id AT1G15125.1  protein_id AT1G15125.1p  transcript_id AT1G15125.1  
At1g15130	chr1:005209183	0.0	C/5209183-5209848,5208084-5209034,5207781-5207870,5207618-5207686,5207379-5207519,5207144-5207192,5206851-5206954,5206217-5206687	AT1G15130.1  CDS  gene_syn F9L1.7, F9L1_7  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: BRO1 (InterPro:IPR004328); Has 24106 Blast hits to 13529 proteins in 779 species: Archae - 27; Bacteria - 1802; Metazoa - 9356; Fungi - 3772; Plants - 5606; Viruses - 598; Other Eukaryotes - 2945 (source: NCBI BLink).  protein_id AT1G15130.1p  transcript_id AT1G15130.1  protein_id AT1G15130.1p  transcript_id AT1G15130.1  
At1g15140	chr1:005211590	0.0	C/5211590-5212137,5210972-5211071,5210642-5210809	AT1G15140.2  CDS  gene_syn F9L1.8, F9L1_8  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product oxidoreductase NAD-binding domain-containing protein  note oxidoreductase NAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity; LOCATED IN: thylakoid, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Phenol hydroxylase reductase (InterPro:IPR001221); BEST Arabidopsis thaliana protein match is: FNR2 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 2); NADPH dehydrogenase/ oxidoreductase/ poly(U) binding (TAIR:AT1G20020.3); Has 2852 Blast hits to 2852 proteins in 826 species: Archae - 44; Bacteria - 2172; Metazoa - 4; Fungi - 65; Plants - 165; Viruses - 0; Other Eukaryotes - 402 (source: NCBI BLink).  protein_id AT1G15140.2p  transcript_id AT1G15140.2  protein_id AT1G15140.2p  transcript_id AT1G15140.2  
At1g15140	chr1:005211590	0.0	C/5211590-5212137,5210972-5211071,5210642-5210809	AT1G15140.3  CDS  gene_syn F9L1.8, F9L1_8  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product oxidoreductase NAD-binding domain-containing protein  note oxidoreductase NAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity; LOCATED IN: thylakoid, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Phenol hydroxylase reductase (InterPro:IPR001221); BEST Arabidopsis thaliana protein match is: FNR2 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 2); NADPH dehydrogenase/ oxidoreductase/ poly(U) binding (TAIR:AT1G20020.3); Has 2852 Blast hits to 2852 proteins in 826 species: Archae - 44; Bacteria - 2172; Metazoa - 4; Fungi - 65; Plants - 165; Viruses - 0; Other Eukaryotes - 402 (source: NCBI BLink).  protein_id AT1G15140.3p  transcript_id AT1G15140.3  protein_id AT1G15140.3p  transcript_id AT1G15140.3  
At1g15140	chr1:005211590	0.0	C/5211590-5212137,5210972-5211071,5210714-5210809,5210549-5210629,5210403-5210465	AT1G15140.1  CDS  gene_syn F9L1.8, F9L1_8  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product oxidoreductase NAD-binding domain-containing protein  note oxidoreductase NAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity; LOCATED IN: thylakoid, chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Phenol hydroxylase reductase (InterPro:IPR001221); BEST Arabidopsis thaliana protein match is: FNR2 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 2); NADPH dehydrogenase/ oxidoreductase/ poly(U) binding (TAIR:AT1G20020.3); Has 4066 Blast hits to 4066 proteins in 971 species: Archae - 52; Bacteria - 3026; Metazoa - 11; Fungi - 136; Plants - 246; Viruses - 0; Other Eukaryotes - 595 (source: NCBI BLink).  protein_id AT1G15140.1p  transcript_id AT1G15140.1  protein_id AT1G15140.1p  transcript_id AT1G15140.1  
At1g15150	chr1:005212674	0.0	W/5212674-5212931,5213047-5213591,5213675-5213761,5213841-5213897,5213989-5214227,5214357-5214562,5214652-5214723	AT1G15150.1  CDS  gene_syn F9L1.9, F9L1_9  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: drug transporter activity, antiporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G15160.1); Has 4539 Blast hits to 4497 proteins in 1011 species: Archae - 61; Bacteria - 2722; Metazoa - 126; Fungi - 210; Plants - 687; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink).  protein_id AT1G15150.1p  transcript_id AT1G15150.1  protein_id AT1G15150.1p  transcript_id AT1G15150.1  
At1g15160	chr1:005215475	0.0	W/5215475-5215732,5215848-5216392,5216472-5216558,5216638-5216694,5216798-5217036,5217170-5217375,5217474-5217545	AT1G15160.1  CDS  gene_syn F9L1.10, F9L1_10  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: drug transporter activity, antiporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G15150.1); Has 4184 Blast hits to 4133 proteins in 986 species: Archae - 41; Bacteria - 2405; Metazoa - 126; Fungi - 210; Plants - 693; Viruses - 0; Other Eukaryotes - 709 (source: NCBI BLink).  protein_id AT1G15160.1p  transcript_id AT1G15160.1  protein_id AT1G15160.1p  transcript_id AT1G15160.1  
At1g15165	chr1:005219796	0.0	C/5219796-5219896,5219552-5219704,5219360-5219426,5219069-5219150,5218532-5218627,5218292-5218310,5218097-5218212,5217719-5217972	AT1G15165.1  CDS  go_component ubiquitin ligase complex|GO:0000151||IEA  go_component endomembrane system|GO:0012505||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  product U-box domain-containing protein  note U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: endomembrane system, ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein / U-box domain-containing family protein (TAIR:AT1G24330.1); Has 221 Blast hits to 209 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 214; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G15165.1p  transcript_id AT1G15165.1  protein_id AT1G15165.1p  transcript_id AT1G15165.1  
At1g15170	chr1:005220690	0.0	W/5220690-5220956,5221043-5221587,5221659-5221745,5221827-5221883,5221996-5222234,5222411-5222616,5222712-5222756	AT1G15170.1  CDS  gene_syn F9L1.11, F9L1_11  go_component chloroplast|GO:0009507|18431481|IDA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: drug transporter activity, antiporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G15180.1); Has 4882 Blast hits to 4835 proteins in 1070 species: Archae - 55; Bacteria - 2976; Metazoa - 126; Fungi - 208; Plants - 690; Viruses - 0; Other Eukaryotes - 827 (source: NCBI BLink).  protein_id AT1G15170.1p  transcript_id AT1G15170.1  protein_id AT1G15170.1p  transcript_id AT1G15170.1  
At1g15175	chr1:005222913	0.0	C/5222913-5224121	AT1G15175.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G15170  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G15175.1  
At1g15180	chr1:005224452	0.0	W/5224452-5224721,5224826-5225370,5225448-5225534,5225614-5225670,5225766-5226004,5226186-5226391,5226487-5226531	AT1G15180.1  CDS  gene_syn F9L1.12, F9L1_12  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G15170.1); Has 4248 Blast hits to 4206 proteins in 991 species: Archae - 55; Bacteria - 2461; Metazoa - 126; Fungi - 208; Plants - 689; Viruses - 0; Other Eukaryotes - 709 (source: NCBI BLink).  protein_id AT1G15180.1p  transcript_id AT1G15180.1  protein_id AT1G15180.1p  transcript_id AT1G15180.1  
At1g15180	chr1:005224916	0.0	W/5224916-5225370,5225448-5225534,5225614-5225670,5225766-5226391,5226487-5226494	AT1G15180.2  CDS  gene_syn F9L1.12, F9L1_12  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: drug transporter activity, antiporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G15170.1); Has 1905 Blast hits to 1893 proteins in 460 species: Archae - 6; Bacteria - 663; Metazoa - 115; Fungi - 206; Plants - 648; Viruses - 0; Other Eukaryotes - 267 (source: NCBI BLink).  protein_id AT1G15180.2p  transcript_id AT1G15180.2  protein_id AT1G15180.2p  transcript_id AT1G15180.2  
At1g15190	chr1:005227275	0.0	W/5227275-5228021	AT1G15190.1  CDS  gene_syn F9L1.13, F9L1_13  go_component endomembrane system|GO:0012505||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); Has 49 Blast hits to 39 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15190.1p  transcript_id AT1G15190.1  protein_id AT1G15190.1p  transcript_id AT1G15190.1  
At1g15200	chr1:005230940	0.0	C/5230940-5231017,5230765-5230860,5230623-5230688,5230374-5230541,5230172-5230288,5229979-5230050,5229546-5229629,5229346-5229446,5228967-5229051,5228477-5228881	AT1G15200.1  CDS  gene_syn F9L1.14, F9L1_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product protein-protein interaction regulator family protein  note protein-protein interaction regulator family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pinin/SDK/memA protein (InterPro:IPR006786); Has 5080 Blast hits to 3694 proteins in 299 species: Archae - 6; Bacteria - 218; Metazoa - 2325; Fungi - 443; Plants - 161; Viruses - 52; Other Eukaryotes - 1875 (source: NCBI BLink).  protein_id AT1G15200.1p  transcript_id AT1G15200.1  protein_id AT1G15200.1p  transcript_id AT1G15200.1  
At1g15210	chr1:005235742	0.0	C/5235742-5236573,5235527-5235657,5235039-5235431,5234080-5234949,5233834-5233987,5233690-5233761,5233493-5233599,5232568-5233409,5231552-5232479	AT1G15210.1  CDS  gene_syn ATPDR7, F9L1.15, F9L1_15, PDR7, PLEIOTROPIC DRUG RESISTANCE 7  gene PDR7  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_process multidrug transport|GO:0006855|16506311|ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product PDR7 (PLEIOTROPIC DRUG RESISTANCE 7); ATPase, coupled to transmembrane movement of substances  note PLEIOTROPIC DRUG RESISTANCE 7 (PDR7); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: multidrug transport; LOCATED IN: plasma membrane, chloroplast, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 (InterPro:IPR000412), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PEN3 (PENETRATION 3); ATPase, coupled to transmembrane movement of substances / cadmium ion transmembrane transporter (TAIR:AT1G59870.1); Has 219007 Blast hits to 166393 proteins in 2528 species: Archae - 4373; Bacteria - 156456; Metazoa - 8068; Fungi - 4637; Plants - 3146; Viruses - 4; Other Eukaryotes - 42323 (source: NCBI BLink).  protein_id AT1G15210.1p  transcript_id AT1G15210.1  protein_id AT1G15210.1p  transcript_id AT1G15210.1  
At1g15215	chr1:005238096	0.0	W/5238096-5238149,5238229-5238314,5238474-5238519,5238609-5238777,5238855-5238915,5239182-5239233,5239295-5239438,5239531-5239650,5239715-5239741	AT1G15215.3  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding / transcription factor (TAIR:AT3G18380.2); Has 41 Blast hits to 40 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15215.3p  transcript_id AT1G15215.3  protein_id AT1G15215.3p  transcript_id AT1G15215.3  
At1g15215	chr1:005238096	0.0	W/5238096-5238149,5238229-5238314,5238474-5238519,5238609-5238777,5238855-5238915,5239182-5239233,5239295-5239438,5239531-5239650,5239726-5239770	AT1G15215.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding / transcription factor (TAIR:AT3G18380.1); Has 41 Blast hits to 40 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15215.2p  transcript_id AT1G15215.2  protein_id AT1G15215.2p  transcript_id AT1G15215.2  
At1g15215	chr1:005238238	0.0	W/5238238-5238314,5238474-5238519,5238609-5238777,5238855-5238915,5239182-5239233,5239295-5239438,5239531-5239650,5239715-5239741	AT1G15215.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding / transcription factor (TAIR:AT3G18380.2); Has 41 Blast hits to 40 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15215.1p  transcript_id AT1G15215.1  protein_id AT1G15215.1p  transcript_id AT1G15215.1  
At1g15220	chr1:005240974	0.0	C/5240974-5241117,5240755-5240886,5240471-5240674	AT1G15220.1  CDS  gene_syn ATCCMH, CCMH, F9L1.17, F9L1_17  gene CCMH  function Encodes a protein with oxidoreductase activity present in the inner membrane of mitochondria. CCMH is postulated to play a central role in mitochondrial cytochrome c maturation, probably as part of a heme lyase complex that also holds activity of reducing apocytochrome c. CCMH interacts with apocytochrome AtCYTc-a and is shown to be present in a 500 kDa-complex along with CcmFN2.  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial inner membrane|GO:0005743|16236729|IDA  go_component protein complex|GO:0043234|16236729|IDA  go_process embryonic development|GO:0009790|16236729|IMP  go_process cytochrome complex assembly|GO:0017004||ISS  go_function oxidoreductase activity|GO:0016491|16236729|IDA  product CCMH; oxidoreductase  note CCMH; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: embryonic development, cytochrome complex assembly; LOCATED IN: mitochondrion, mitochondrial inner membrane, protein complex; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome C biogenesis protein CcmH (InterPro:IPR005616); Has 2520 Blast hits to 2520 proteins in 456 species: Archae - 0; Bacteria - 1225; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 1278 (source: NCBI BLink).  protein_id AT1G15220.1p  transcript_id AT1G15220.1  protein_id AT1G15220.1p  transcript_id AT1G15220.1  
At1g15220	chr1:005240974	0.0	C/5240974-5241117,5240755-5240886,5240471-5240674	AT1G15220.2  CDS  gene_syn ATCCMH, CCMH, F9L1.17, F9L1_17  gene CCMH  function Encodes a protein with oxidoreductase activity present in the inner membrane of mitochondria. CCMH is postulated to play a central role in mitochondrial cytochrome c maturation, probably as part of a heme lyase complex that also holds activity of reducing apocytochrome c. CCMH interacts with apocytochrome AtCYTc-a and is shown to be present in a 500 kDa-complex along with CcmFN2.  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial inner membrane|GO:0005743|16236729|IDA  go_component protein complex|GO:0043234|16236729|IDA  go_process embryonic development|GO:0009790|16236729|IMP  go_process cytochrome complex assembly|GO:0017004||ISS  go_function oxidoreductase activity|GO:0016491|16236729|IDA  product CCMH; oxidoreductase  note CCMH; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: embryonic development, cytochrome complex assembly; LOCATED IN: mitochondrion, mitochondrial inner membrane, protein complex; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome C biogenesis protein CcmH (InterPro:IPR005616); Has 2520 Blast hits to 2520 proteins in 456 species: Archae - 0; Bacteria - 1225; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 1278 (source: NCBI BLink).  protein_id AT1G15220.2p  transcript_id AT1G15220.2  protein_id AT1G15220.2p  transcript_id AT1G15220.2  
At1g15230	chr1:005242729	0.0	C/5242729-5243196	AT1G15230.1  CDS  gene_syn F9L1.18, F9L1_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 15 Blast hits to 15 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15230.1p  transcript_id AT1G15230.1  protein_id AT1G15230.1p  transcript_id AT1G15230.1  
At1g15240	chr1:005243799	0.0	W/5243799-5243907,5244051-5244447,5244534-5244711,5244813-5244952,5245027-5246050,5246148-5246248,5246324-5246468,5246929-5246997,5247073-5247118,5247198-5247487,5247584-5247663,5247765-5247900,5248075-5248201,5248302-5248384,5248467-5248604	AT1G15240.2  CDS  gene_syn F9L1.19, F9L1_19  go_process signal transduction|GO:0007165|15358268|ISS  go_process intracellular signaling cascade|GO:0007242||ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product phox (PX) domain-containing protein  note phox (PX) domain-containing protein; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction, intracellular signaling cascade; CONTAINS InterPro DOMAIN/s: PX-associated, sorting nexin 13 (InterPro:IPR013996), Sorting nexin, C-terminal (InterPro:IPR013937), Phox-like (InterPro:IPR001683), Phox-associated domain (InterPro:IPR003114); BEST Arabidopsis thaliana protein match is: phox (PX) domain-containing protein (TAIR:AT2G15900.1).  protein_id AT1G15240.2p  transcript_id AT1G15240.2  protein_id AT1G15240.2p  transcript_id AT1G15240.2  
At1g15240	chr1:005243799	0.0	W/5243799-5243907,5244051-5244447,5244534-5244711,5244813-5244952,5245027-5246050,5246148-5246248,5246324-5246495	AT1G15240.1  CDS  gene_syn F9L1.19, F9L1_19  go_process signal transduction|GO:0007165|15358268|ISS  go_process intracellular signaling cascade|GO:0007242||ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product phox (PX) domain-containing protein  note phox (PX) domain-containing protein; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction, intracellular signaling cascade; CONTAINS InterPro DOMAIN/s: Phox-like (InterPro:IPR001683), Phox-associated domain (InterPro:IPR003114); BEST Arabidopsis thaliana protein match is: phox (PX) domain-containing protein (TAIR:AT2G15900.1); Has 454 Blast hits to 435 proteins in 121 species: Archae - 0; Bacteria - 6; Metazoa - 243; Fungi - 85; Plants - 73; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G15240.1p  transcript_id AT1G15240.1  protein_id AT1G15240.1p  transcript_id AT1G15240.1  
At1g15250	chr1:005249379	0.0	C/5249379-5249381,5249169-5249304,5248961-5249062,5248825-5248871	AT1G15250.1  CDS  gene_syn F9L1.46, F9L1_46  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L37 (RPL37A)  note 60S ribosomal protein L37 (RPL37A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, ribosome; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L37e, conserved site (InterPro:IPR018267), Ribosomal protein, zinc-binding (InterPro:IPR011332), Ribosomal protein L37ae/L37e, core (InterPro:IPR011331), Ribosomal protein L37e (InterPro:IPR001569); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L37 (RPL37C) (TAIR:AT3G16080.1); Has 707 Blast hits to 707 proteins in 247 species: Archae - 202; Bacteria - 0; Metazoa - 220; Fungi - 103; Plants - 72; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT1G15250.1p  transcript_id AT1G15250.1  protein_id AT1G15250.1p  transcript_id AT1G15250.1  
At1g15260	chr1:005249834	0.0	W/5249834-5250370	AT1G15260.1  CDS  gene_syn F9L1.20, F9L1_20  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16070.1); Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15260.1p  transcript_id AT1G15260.1  protein_id AT1G15260.1p  transcript_id AT1G15260.1  
At1g15270	chr1:005252005	0.0	C/5252005-5252020,5251845-5251900,5251450-5251491,5250833-5250913	AT1G15270.1  CDS  gene_syn F9L1.21, F9L1_21  go_component plasma membrane|GO:0005886|17644812|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation machinery associated TMA7 (InterPro:IPR015157); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16040.1); Has 263 Blast hits to 263 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 48; Plants - 41; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G15270.1p  transcript_id AT1G15270.1  protein_id AT1G15270.1p  transcript_id AT1G15270.1  
At1g15280	chr1:005252538	0.0	W/5252538-5252935,5253288-5253387,5253546-5253751,5253831-5254525,5254734-5254836,5255182-5255292,5255470-5255525,5255840-5255900,5256187-5256214	AT1G15280.2  CDS  gene_syn F9L1.22, F9L1_22  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CASC3/Barentsz eIF4AIII binding (InterPro:IPR018545); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80000.2); Has 3928 Blast hits to 2073 proteins in 245 species: Archae - 0; Bacteria - 154; Metazoa - 1298; Fungi - 267; Plants - 178; Viruses - 66; Other Eukaryotes - 1965 (source: NCBI BLink).  protein_id AT1G15280.2p  transcript_id AT1G15280.2  protein_id AT1G15280.2p  transcript_id AT1G15280.2  
At1g15280	chr1:005252538	0.0	W/5252538-5252935,5253288-5253387,5253549-5253751,5253831-5254525,5254734-5254836,5255182-5255292,5255470-5255525,5255840-5255900,5256187-5256214	AT1G15280.1  CDS  gene_syn F9L1.22, F9L1_22  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CASC3/Barentsz eIF4AIII binding (InterPro:IPR018545); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80000.2); Has 3934 Blast hits to 2063 proteins in 239 species: Archae - 0; Bacteria - 148; Metazoa - 1302; Fungi - 277; Plants - 172; Viruses - 70; Other Eukaryotes - 1965 (source: NCBI BLink).  protein_id AT1G15280.1p  transcript_id AT1G15280.1  protein_id AT1G15280.1p  transcript_id AT1G15280.1  
At1g15290	chr1:005264581	0.0	C/5264581-5264814,5264420-5264492,5263968-5264198,5263688-5263884,5263555-5263596,5262945-5263466,5262580-5262734,5261815-5262301,5261623-5261685,5261435-5261536,5260949-5261266,5260786-5260878,5260549-5260650,5260358-5260462,5260077-5260210,5259707-5259890,5259498-5259629,5259253-5259365,5259090-5259171,5257327-5258784	AT1G15290.1  CDS  gene_syn F9L1.23, F9L1_23  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT4G28080.1); Has 8993 Blast hits to 2614 proteins in 265 species: Archae - 85; Bacteria - 2044; Metazoa - 4793; Fungi - 935; Plants - 100; Viruses - 4; Other Eukaryotes - 1032 (source: NCBI BLink).  protein_id AT1G15290.1p  transcript_id AT1G15290.1  protein_id AT1G15290.1p  transcript_id AT1G15290.1  
At1g15300	chr1:005265726	0.0	C/5265726-5268602	AT1G15300.1  mRNA_TE_gene  pseudo  gene_syn F9L1.24, F9L1_24  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 5.1e-59 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays)  
At1g15310	chr1:005271717	0.0	C/5271717-5271947,5271532-5271631,5271282-5271435,5270436-5270586,5270206-5270354,5269993-5270093,5269723-5269877,5269534-5269648,5269173-5269456	AT1G15310.1  CDS  gene_syn ARABIDOPSIS THALIANA SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT, ATHSRP54A, F9L1.25, F9L1_25, SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT, SRP54-1  gene ATHSRP54A  function 54 kDa protein subunit of SRP that interacts with the signal peptide of secreted proteins  go_process SRP-dependent cotranslational protein targeting to membrane|GO:0006614||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function GTP binding|GO:0005525||IEA  go_function 7S RNA binding|GO:0008312||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component cytoplasm|GO:0005737|7824644|ISS  go_component signal recognition particle, endoplasmic reticulum targeting|GO:0005786|8292790|ISS  go_component signal recognition particle, endoplasmic reticulum targeting|GO:0005786||ISS  go_process SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition|GO:0006617||ISS  go_function mRNA binding|GO:0003729||ISS  go_function GTP binding|GO:0005525||ISS  go_function 7S RNA binding|GO:0008312||ISS  product ATHSRP54A (ARABIDOPSIS THALIANA SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT); 7S RNA binding / GTP binding / mRNA binding / nucleoside-triphosphatase/ nucleotide binding  note ARABIDOPSIS THALIANA SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT (ATHSRP54A); FUNCTIONS IN: 7S RNA binding, mRNA binding, nucleoside-triphosphatase activity, GTP binding, nucleotide binding; INVOLVED IN: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition, SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: signal recognition particle, endoplasmic reticulum targeting, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Signal recognition particle, SRP54 subunit, helical bundle (InterPro:IPR013822), Signal recognition particle, SRP54 subunit, M-domain (InterPro:IPR004125), Signal recognition particle, SRP54 subunit (InterPro:IPR006325), Signal recognition particle, SRP54 subunit, GTPase (InterPro:IPR000897); BEST Arabidopsis thaliana protein match is: signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C) (TAIR:AT1G48900.1); Has 12037 Blast hits to 12032 proteins in 1585 species: Archae - 312; Bacteria - 5649; Metazoa - 261; Fungi - 192; Plants - 147; Viruses - 0; Other Eukaryotes - 5476 (source: NCBI BLink).  protein_id AT1G15310.1p  transcript_id AT1G15310.1  protein_id AT1G15310.1p  transcript_id AT1G15310.1  
At1g15320	chr1:005273483	0.0	C/5273483-5273699,5272807-5273335,5272468-5272645	AT1G15320.1  CDS  gene_syn F9L1.26, F9L1_26  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 31 Blast hits to 31 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15320.1p  transcript_id AT1G15320.1  protein_id AT1G15320.1p  transcript_id AT1G15320.1  
At1g15320	chr1:005274004	0.0	C/5274004-5274029,5273483-5273619,5272807-5273335,5272468-5272645	AT1G15320.2  CDS  gene_syn F9L1.26, F9L1_26  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 31 Blast hits to 31 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15320.2p  transcript_id AT1G15320.2  protein_id AT1G15320.2p  transcript_id AT1G15320.2  
At1g15330	chr1:005274368	0.0	W/5274368-5275135,5275209-5275499	AT1G15330.1  CDS  gene_syn F9L1.27, F9L1_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product CBS domain-containing protein  note CBS domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein (TAIR:AT1G80090.1); Has 364 Blast hits to 364 proteins in 90 species: Archae - 2; Bacteria - 4; Metazoa - 214; Fungi - 57; Plants - 56; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT1G15330.1p  transcript_id AT1G15330.1  protein_id AT1G15330.1p  transcript_id AT1G15330.1  
At1g15340	chr1:005277412	0.0	C/5277412-5277474,5275895-5276986	AT1G15340.1  CDS  gene_syn F9L1.28, F9L1_28, MBD10  gene MBD10  function Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.  go_component nucleus|GO:0005634||IEA  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  go_function methyl-CpG binding|GO:0008327|12787239|ISS  product MBD10; DNA binding / methyl-CpG binding  note MBD10; FUNCTIONS IN: methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); BEST Arabidopsis thaliana protein match is: MBD11; DNA binding / methyl-CpG binding (TAIR:AT3G15790.1); Has 115337 Blast hits to 56234 proteins in 2072 species: Archae - 428; Bacteria - 16429; Metazoa - 47218; Fungi - 11556; Plants - 4270; Viruses - 722; Other Eukaryotes - 34714 (source: NCBI BLink).  protein_id AT1G15340.1p  transcript_id AT1G15340.1  protein_id AT1G15340.1p  transcript_id AT1G15340.1  
At1g15350	chr1:005278945	0.0	C/5278945-5279056,5278764-5278854,5278606-5278675,5278481-5278534	AT1G15350.3  CDS  gene_syn F9L1.29, F9L1_29  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15770.2); Has 74 Blast hits to 74 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G15350.3p  transcript_id AT1G15350.3  protein_id AT1G15350.3p  transcript_id AT1G15350.3  
At1g15350	chr1:005279482	0.0	C/5279482-5279486,5278945-5279189,5278764-5278854,5278606-5278675,5278481-5278534	AT1G15350.1  CDS  gene_syn F9L1.29, F9L1_29  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25360.1); Has 74 Blast hits to 74 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G15350.1p  transcript_id AT1G15350.1  protein_id AT1G15350.1p  transcript_id AT1G15350.1  
At1g15350	chr1:005279482	0.0	C/5279482-5279486,5278945-5279189,5278764-5278854,5278606-5278675,5278481-5278534	AT1G15350.2  CDS  gene_syn F9L1.29, F9L1_29  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25360.1); Has 74 Blast hits to 74 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G15350.2p  transcript_id AT1G15350.2  protein_id AT1G15350.2p  transcript_id AT1G15350.2  
At1g15360	chr1:005283609	0.0	W/5283609-5283688,5283987-5284506	AT1G15360.1  CDS  gene_syn F9L1.31, F9L1_31, SHINE 1, SHN1, WAX INDUCER 1, WIN1  gene SHN1  function Encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. This gene is involved in wax biosynthesis. Over-expression of the gene results in glossy leaf phenotype and increased drought tolerance. Two closely related genes, AT5G25390 and AT5G11190 have similar phenotypes when over-expressed. Strong expression levels in flowers. Binds to the promoter of LACS2.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to water deprivation|GO:0009414|15319479|IMP  go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS  go_process cutin biosynthetic process|GO:0010143|17449808|IMP  go_process wax metabolic process|GO:0010166|15319479|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9687012|TAS  go_function transcription factor activity|GO:0003700||ISS  go_function sequence-specific DNA binding|GO:0043565|17449808|IPI  product SHN1 (SHINE 1); DNA binding / sequence-specific DNA binding / transcription factor  note SHINE 1 (SHN1); FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding, DNA binding; INVOLVED IN: ethylene mediated signaling pathway, response to water deprivation, wax metabolic process, regulation of transcription, DNA-dependent, cutin biosynthetic process; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: SHN3 (shine3); DNA binding / transcription factor (TAIR:AT5G11190.1); Has 3859 Blast hits to 3758 proteins in 219 species: Archae - 0; Bacteria - 6; Metazoa - 22; Fungi - 21; Plants - 3773; Viruses - 2; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT1G15360.1p  transcript_id AT1G15360.1  protein_id AT1G15360.1p  transcript_id AT1G15360.1  
At1g15370	chr1:005287135	0.0	W/5287135-5287187,5287801-5287914,5288013-5288092,5288179-5288375	AT1G15370.1  CDS  gene_syn F9L1.32, F9L1_32  go_process transport|GO:0006810||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin-like (InterPro:IPR011012); Has 48 Blast hits to 48 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 39; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G15370.1p  transcript_id AT1G15370.1  protein_id AT1G15370.1p  transcript_id AT1G15370.1  
At1g15380	chr1:005290955	0.0	W/5290955-5291109,5291215-5291320,5292024-5292287	AT1G15380.1  CDS  gene_syn F9L1.33, F9L1_33  go_component cellular_component|GO:0005575||ND  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function lactoylglutathione lyase activity|GO:0004462||ISS  product lactoylglutathione lyase family protein / glyoxalase I family protein  note lactoylglutathione lyase family protein / glyoxalase I family protein; FUNCTIONS IN: lactoylglutathione lyase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: lactoylglutathione lyase family protein / glyoxalase I family protein (TAIR:AT1G80160.1); Has 483 Blast hits to 483 proteins in 168 species: Archae - 1; Bacteria - 286; Metazoa - 3; Fungi - 2; Plants - 125; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT1G15380.1p  transcript_id AT1G15380.1  protein_id AT1G15380.1p  transcript_id AT1G15380.1  
At1g15380	chr1:005290955	0.0	W/5290955-5291109,5291215-5291320,5292024-5292287	AT1G15380.2  CDS  gene_syn F9L1.33, F9L1_33  go_component cellular_component|GO:0005575||ND  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function lactoylglutathione lyase activity|GO:0004462||ISS  product lactoylglutathione lyase family protein / glyoxalase I family protein  note lactoylglutathione lyase family protein / glyoxalase I family protein; FUNCTIONS IN: lactoylglutathione lyase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: lactoylglutathione lyase family protein / glyoxalase I family protein (TAIR:AT1G80160.1); Has 483 Blast hits to 483 proteins in 168 species: Archae - 1; Bacteria - 286; Metazoa - 3; Fungi - 2; Plants - 125; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT1G15380.2p  transcript_id AT1G15380.2  protein_id AT1G15380.2p  transcript_id AT1G15380.2  
At1g15385	chr1:005292976	0.0	C/5292976-5293197	AT1G15385.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15385.1p  transcript_id AT1G15385.1  protein_id AT1G15385.1p  transcript_id AT1G15385.1  
At1g15390	chr1:005294653	0.0	W/5294653-5295063,5295144-5295233,5295317-5295625	AT1G15390.1  CDS  gene_syn PDF1A, PEPTIDE DEFORMYLASE 1A  gene PDF1A  function encodes a peptide deformylase-like protein. Removes N-formyl groups, a prerequisite for the action of methionine aminopeptidase during protein synthesis. Targeted to mitochondria. Requires Zn for catalysis.  go_component mitochondrion|GO:0005739|18385124|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component mitochondrion|GO:0005739|11060042|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process translation|GO:0006412||ISS  go_process co-translational protein modification|GO:0043686|11733990|IDA  go_function peptide deformylase activity|GO:0042586|11733990|IDA  go_function peptide deformylase activity|GO:0042586||ISS  product PDF1A (PEPTIDE DEFORMYLASE 1A); peptide deformylase  note PEPTIDE DEFORMYLASE 1A (PDF1A); FUNCTIONS IN: peptide deformylase activity; INVOLVED IN: translation, co-translational protein modification; LOCATED IN: mitochondrion, chloroplast, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Formylmethionine deformylase (InterPro:IPR000181); BEST Arabidopsis thaliana protein match is: PDF1B (PEPTIDE DEFORMYLASE 1B); iron ion binding / peptide deformylase (TAIR:AT5G14660.2); Has 7111 Blast hits to 7111 proteins in 1452 species: Archae - 4; Bacteria - 4242; Metazoa - 95; Fungi - 0; Plants - 62; Viruses - 2; Other Eukaryotes - 2706 (source: NCBI BLink).  protein_id AT1G15390.1p  transcript_id AT1G15390.1  protein_id AT1G15390.1p  transcript_id AT1G15390.1  
At1g15400	chr1:005296402	0.0	C/5296402-5296824	AT1G15400.2  CDS  gene_syn F9L1.35, F9L1_35  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80180.1); Has 48 Blast hits to 48 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G15400.2p  transcript_id AT1G15400.2  protein_id AT1G15400.2p  transcript_id AT1G15400.2  
At1g15400	chr1:005296406	0.0	C/5296406-5296824,5296019-5296046	AT1G15400.3  CDS  gene_syn F9L1.35, F9L1_35  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80180.1); Has 50 Blast hits to 50 proteins in 11 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G15400.3p  transcript_id AT1G15400.3  protein_id AT1G15400.3p  transcript_id AT1G15400.3  
At1g15400	chr1:005296406	0.0	C/5296406-5296824,5296033-5296051	AT1G15400.1  CDS  gene_syn F9L1.35, F9L1_35  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80180.1); Has 48 Blast hits to 48 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G15400.1p  transcript_id AT1G15400.1  protein_id AT1G15400.1p  transcript_id AT1G15400.1  
At1g15405	chr1:005297875	0.0	C/5297875-5298166	AT1G15405.1  ncRNA  function Unknown gene  product other RNA  transcript_id AT1G15405.1  
At1g15410	chr1:005299577	0.0	W/5299577-5300293,5300406-5300681	AT1G15410.1  CDS  gene_syn F9L1.36, F9L1_36  go_component chloroplast|GO:0009507|18431481|IDA  go_process amino acid metabolic process|GO:0006520||IEA  go_process metabolic process|GO:0008152||IEA  go_function racemase and epimerase activity, acting on amino acids and derivatives|GO:0016855||IEA  go_process metabolic process|GO:0008152||ISS  go_function racemase and epimerase activity, acting on amino acids and derivatives|GO:0016855||ISS  product aspartate-glutamate racemase family  note aspartate-glutamate racemase family; FUNCTIONS IN: racemase and epimerase activity, acting on amino acids and derivatives; INVOLVED IN: amino acid metabolic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Asp/Glu/hydantoin racemase (InterPro:IPR015942), Aspartate racemase (InterPro:IPR004380), Asp/Glu racemase (InterPro:IPR001920); Has 1506 Blast hits to 1496 proteins in 349 species: Archae - 38; Bacteria - 814; Metazoa - 0; Fungi - 2; Plants - 18; Viruses - 0; Other Eukaryotes - 634 (source: NCBI BLink).  protein_id AT1G15410.1p  transcript_id AT1G15410.1  protein_id AT1G15410.1p  transcript_id AT1G15410.1  
At1g15415	chr1:005301350	0.0	C/5301350-5301412,5301189-5301242,5300931-5301104	AT1G15415.1  CDS  gene_syn F9L1.37, F9L1_37  function The protein encoded by this gene was identified as a part of pollen proteome by mass spec analysis. It has weak homology to LEA (late embryo abundant) proteins.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte; Has 12 Blast hits to 12 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15415.1p  transcript_id AT1G15415.1  protein_id AT1G15415.1p  transcript_id AT1G15415.1  
At1g15420	chr1:005303251	0.0	C/5303251-5303296,5303059-5303157,5302689-5302936,5302526-5302608,5302334-5302445,5302152-5302214,5301794-5301979	AT1G15420.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function NUC189, C-terminal (InterPro:IPR012979); Has 698 Blast hits to 572 proteins in 149 species: Archae - 0; Bacteria - 42; Metazoa - 236; Fungi - 117; Plants - 61; Viruses - 27; Other Eukaryotes - 215 (source: NCBI BLink).  protein_id AT1G15420.1p  transcript_id AT1G15420.1  protein_id AT1G15420.1p  transcript_id AT1G15420.1  
At1g15430	chr1:005305011	0.0	W/5305011-5305790	AT1G15430.1  CDS  gene_syn F9L1.39, F9L1_39  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G80220.1); Has 144 Blast hits to 135 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15430.1p  transcript_id AT1G15430.1  protein_id AT1G15430.1p  transcript_id AT1G15430.1  
At1g15430	chr1:005305011	0.0	W/5305011-5305790	AT1G15430.2  CDS  gene_syn F9L1.39, F9L1_39  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G80220.1); Has 144 Blast hits to 135 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15430.2p  transcript_id AT1G15430.2  protein_id AT1G15430.2p  transcript_id AT1G15430.2  
At1g15440	chr1:005308219	0.0	C/5308219-5309460,5307867-5308118,5307686-5307778,5307174-5307545,5306730-5307074,5306419-5306646,5306159-5306329	AT1G15440.1  CDS  gene_syn F9L1.40, F9L1_40  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), Periodic tryptophan protein-associated region (InterPro:IPR007190), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G49660.1); Has 56570 Blast hits to 23907 proteins in 640 species: Archae - 46; Bacteria - 6391; Metazoa - 26660; Fungi - 10130; Plants - 5359; Viruses - 0; Other Eukaryotes - 7984 (source: NCBI BLink).  protein_id AT1G15440.1p  transcript_id AT1G15440.1  protein_id AT1G15440.1p  transcript_id AT1G15440.1  
At1g15440	chr1:005308964	0.0	C/5308964-5309460,5308219-5308843,5307867-5308118,5307686-5307778,5307174-5307545,5306730-5307074,5306419-5306646,5306159-5306329	AT1G15440.2  CDS  gene_syn F9L1.40, F9L1_40  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), Periodic tryptophan protein-associated region (InterPro:IPR007190), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G49660.1); Has 56231 Blast hits to 23898 proteins in 641 species: Archae - 44; Bacteria - 6257; Metazoa - 26493; Fungi - 10127; Plants - 5365; Viruses - 0; Other Eukaryotes - 7945 (source: NCBI BLink).  protein_id AT1G15440.2p  transcript_id AT1G15440.2  protein_id AT1G15440.2p  transcript_id AT1G15440.2  
At1g15450	chr1:005309647	0.0	C/5309647-5309718	AT1G15450.1  tRNA  gene_syn 51439.TRNA-TRP-1, 51691.TRNA-TRP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Trp (anticodon: CCA)  transcript_id AT1G15450.1  
At1g15460	chr1:005313258	0.0	C/5313258-5313376,5313089-5313171,5312679-5312871,5312282-5312586,5312035-5312201,5311775-5311948,5311605-5311700,5311412-5311528,5310983-5311320,5310610-5310889,5310341-5310460,5310196-5310255	AT1G15460.1  CDS  gene_syn ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, ATBOR4, BOR4, F9L1.41, F9L1_41, REQUIRES HIGH BORON 4  gene BOR4  function Encodes a efflux-type boron transporter. Over-expression improved plant growth under B toxic conditions.  go_component plasma membrane|GO:0005886|18048682|IDA  go_process boron transport|GO:0046713|18048682|IMP  go_function anion exchanger activity|GO:0015380||ISS  go_function boron efflux transmembrane transporter activity|GO:0080139|18048682|IMP  product BOR4 (REQUIRES HIGH BORON 4); anion exchanger  note REQUIRES HIGH BORON 4 (BOR4); FUNCTIONS IN: boron efflux transmembrane transporter activity, anion exchanger activity; INVOLVED IN: boron transport; LOCATED IN: plasma membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, eukaryotic (InterPro:IPR003020), Bicarbonate transporter, C-terminal (InterPro:IPR011531); BEST Arabidopsis thaliana protein match is: BOR5; anion exchanger (TAIR:AT1G74810.1); Has 2058 Blast hits to 1065 proteins in 140 species: Archae - 0; Bacteria - 4; Metazoa - 1697; Fungi - 207; Plants - 101; Viruses - 2; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G15460.1p  transcript_id AT1G15460.1  protein_id AT1G15460.1p  transcript_id AT1G15460.1  
At1g15470	chr1:005315838	0.0	W/5315838-5315940,5316173-5316308,5316509-5316590,5316766-5316941,5317027-5317164,5317250-5317389,5317470-5317696	AT1G15470.1  CDS  gene_syn F9L1.42, F9L1_42  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G15610.1); Has 30729 Blast hits to 16551 proteins in 545 species: Archae - 52; Bacteria - 4851; Metazoa - 13118; Fungi - 6378; Plants - 2293; Viruses - 0; Other Eukaryotes - 4037 (source: NCBI BLink).  protein_id AT1G15470.1p  transcript_id AT1G15470.1  protein_id AT1G15470.1p  transcript_id AT1G15470.1  
At1g15480	chr1:005318307	0.0	W/5318307-5318335,5318500-5319007,5319175-5320422	AT1G15480.1  CDS  gene_syn F9L1.43, F9L1_43  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT1G80270.3); Has 5035 Blast hits to 2385 proteins in 112 species: Archae - 3; Bacteria - 2; Metazoa - 147; Fungi - 55; Plants - 4692; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).  protein_id AT1G15480.1p  transcript_id AT1G15480.1  protein_id AT1G15480.1p  transcript_id AT1G15480.1  
At1g15490	chr1:005323158	0.0	C/5323158-5323422,5322653-5322960,5321846-5322562,5321634-5321762,5321348-5321551,5321076-5321276,5320859-5320981	AT1G15490.1  CDS  gene_syn F9L1.44, F9L1_44  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT1G80280.1); Has 4013 Blast hits to 4004 proteins in 659 species: Archae - 21; Bacteria - 2679; Metazoa - 195; Fungi - 39; Plants - 235; Viruses - 0; Other Eukaryotes - 844 (source: NCBI BLink).  protein_id AT1G15490.1p  transcript_id AT1G15490.1  protein_id AT1G15490.1p  transcript_id AT1G15490.1  
At1g15500	chr1:005326426	0.0	W/5326426-5327205,5327350-5327604,5327691-5327834,5327926-5328273,5328359-5328688	AT1G15500.1  CDS  gene_syn ATNTT2, T16N11.1, T16N11_1  gene ATNTT2  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_process transport|GO:0006810||IEA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_function ATP:ADP antiporter activity|GO:0005471||ISS  product ATNTT2; ATP:ADP antiporter  note ATNTT2; FUNCTIONS IN: ATP:ADP antiporter activity; INVOLVED IN: transport; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast envelope, cytoplasm; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: ADP/ATP carrier protein (InterPro:IPR004667); BEST Arabidopsis thaliana protein match is: NTT1 (NUCLEOTIDE TRANSPORTER 1); ATP:ADP antiporter (TAIR:AT1G80300.1); Has 575 Blast hits to 575 proteins in 123 species: Archae - 0; Bacteria - 355; Metazoa - 2; Fungi - 15; Plants - 62; Viruses - 0; Other Eukaryotes - 141 (source: NCBI BLink).  protein_id AT1G15500.1p  transcript_id AT1G15500.1  protein_id AT1G15500.1p  transcript_id AT1G15500.1  
At1g15510	chr1:005329111	0.0	W/5329111-5331711	AT1G15510.1  CDS  gene_syn T16N11.2, T16N11_2  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: DOT4 (DEFECTIVELY ORGANIZED TRIBUTARIES 4) (TAIR:AT4G18750.1); Has 17454 Blast hits to 5077 proteins in 164 species: Archae - 0; Bacteria - 2; Metazoa - 64; Fungi - 73; Plants - 16886; Viruses - 0; Other Eukaryotes - 429 (source: NCBI BLink).  protein_id AT1G15510.1p  transcript_id AT1G15510.1  protein_id AT1G15510.1p  transcript_id AT1G15510.1  
At1g15520	chr1:005337844	0.0	C/5337844-5338175,5337598-5337718,5337421-5337509,5337244-5337328,5336985-5337144,5336811-5336887,5336673-5336726,5336194-5336586,5335831-5336112,5335407-5335723,5335151-5335311,5334964-5335067,5334707-5334863,5334431-5334612,5334018-5334350,5333645-5333935,5333478-5333561,5333262-5333395,5332949-5333176,5332684-5332855,5332346-5332600,5331993-5332253	AT1G15520.1  CDS  gene_syn ATPDR12, PDR12, PLEIOTROPIC DRUG RESISTANCE 12, T16N11.3, T16N11_3  gene PDR12  function ABC transporter family involved in resistant to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers. Not expressed in roots.  go_component plasma membrane|GO:0005886|15923333|IDA  go_process multidrug transport|GO:0006855|16506311|ISS  go_process response to biotic stimulus|GO:0009607|16506311|TAS  go_process response to ethylene stimulus|GO:0009723|16506311|TAS  go_process response to salicylic acid stimulus|GO:0009751|16506311|TAS  go_process response to jasmonic acid stimulus|GO:0009753|16506311|TAS  go_process response to ozone|GO:0010193|19054359|IEP  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_process lead ion transport|GO:0015692|15923333|IMP  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product PDR12 (PLEIOTROPIC DRUG RESISTANCE 12); ATPase, coupled to transmembrane movement of substances  note PLEIOTROPIC DRUG RESISTANCE 12 (PDR12); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: in 8 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 (InterPro:IPR000412), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PDR11 (PLEIOTROPIC DRUG RESISTANCE 11); ATPase, coupled to transmembrane movement of substances (TAIR:AT1G66950.1); Has 219482 Blast hits to 161984 proteins in 2483 species: Archae - 4596; Bacteria - 156449; Metazoa - 7426; Fungi - 4235; Plants - 2879; Viruses - 2; Other Eukaryotes - 43895 (source: NCBI BLink).  protein_id AT1G15520.1p  transcript_id AT1G15520.1  protein_id AT1G15520.1p  transcript_id AT1G15520.1  
At1g15530	chr1:005339961	0.0	C/5339961-5341931	AT1G15530.1  CDS  gene_syn T16N11.4, T16N11_4  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product receptor lectin kinase, putative  note receptor lectin kinase, putative; FUNCTIONS IN: carbohydrate binding, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin protein kinase family protein (TAIR:AT4G29050.1); Has 88310 Blast hits to 87192 proteins in 3243 species: Archae - 57; Bacteria - 7746; Metazoa - 38647; Fungi - 6934; Plants - 19705; Viruses - 445; Other Eukaryotes - 14776 (source: NCBI BLink).  protein_id AT1G15530.1p  transcript_id AT1G15530.1  protein_id AT1G15530.1p  transcript_id AT1G15530.1  
At1g15540	chr1:005342587	0.0	W/5342587-5342972,5343058-5343382,5343454-5343705	AT1G15540.1  CDS  gene_syn T16N11.5, T16N11_5  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function oxidoreductase activity|GO:0016491||IEA  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: N-terminal protein myristoylation; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT1G80320.1); Has 2858 Blast hits to 2815 proteins in 396 species: Archae - 0; Bacteria - 252; Metazoa - 25; Fungi - 215; Plants - 2034; Viruses - 0; Other Eukaryotes - 332 (source: NCBI BLink).  protein_id AT1G15540.1p  transcript_id AT1G15540.1  protein_id AT1G15540.1p  transcript_id AT1G15540.1  
At1g15550	chr1:005345588	0.0	C/5345588-5346078,5344569-5345154	AT1G15550.1  CDS  gene_syn ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, ATGA3OX1, GA REQUIRING 4, GA3OX1, GA4, GIBBERELLIN 3 BETA-HYDROXYLASE, GIBBERELLIN 3-OXIDASE 1, T16N11.6, T16N11_6  gene GA3OX1  function Involved in later steps of the gibberellic acid biosynthetic pathway. Activated by AGAMOUS in a cal-1, ap1-1 background. Deletion of 208 bp from -1016 to -809 (& 916;-808) resulted in loss of GA-negative feedback (this sequence, which contains a 43-bp sequence GNFEI, was shown to be sufficient for GA-negative feedback).  go_component cytoplasm|GO:0005737|9701576|TAS  go_process response to red or far red light|GO:0009639|17010113|IEP  go_process gibberellin biosynthetic process|GO:0009686|15923331|TAS  go_process gibberellin biosynthetic process|GO:0009686|2236013|IMP  go_process response to gibberellin stimulus|GO:0009739|15927942|IEP  go_process response to gibberellin stimulus|GO:0009739|17277098|IEP  go_process response to gibberellin stimulus|GO:0009739|17933900|IEP  go_process gibberellic acid mediated signaling|GO:0009740|9701576|TAS  go_process response to red light|GO:0010114|17449805|IEP  go_function transcription factor binding|GO:0008134|17277098|IPI  go_function gibberellin 3-beta-dioxygenase activity|GO:0016707|2236013|IMP  go_function gibberellin 3-beta-dioxygenase activity|GO:0016707|9625708|IDA  go_function gibberellin 3-beta-dioxygenase activity|GO:0016707|9701576|TAS  product GA3OX1 (GIBBERELLIN 3-OXIDASE 1); gibberellin 3-beta-dioxygenase/ transcription factor binding  note GIBBERELLIN 3-OXIDASE 1 (GA3OX1); FUNCTIONS IN: gibberellin 3-beta-dioxygenase activity, transcription factor binding; INVOLVED IN: response to red or far red light, response to gibberellin stimulus, response to red light, gibberellin biosynthetic process, gibberellic acid mediated signaling; LOCATED IN: cytoplasm; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: GA3OX2 (GIBBERELLIN 3-OXIDASE 2); gibberellin 3-beta-dioxygenase (TAIR:AT1G80340.1); Has 5824 Blast hits to 5810 proteins in 684 species: Archae - 0; Bacteria - 724; Metazoa - 113; Fungi - 634; Plants - 3064; Viruses - 0; Other Eukaryotes - 1289 (source: NCBI BLink).  protein_id AT1G15550.1p  transcript_id AT1G15550.1  protein_id AT1G15550.1p  transcript_id AT1G15550.1  
At1g15560	chr1:005352655	0.0	C/5352655-5354314	AT1G15560.1  mRNA_TE_gene  pseudo  gene_syn T16N11.7, T16N11_7  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 3.8e-130 P-value blast match to At1g15560.1/58-302 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At1g15570	chr1:005363034	0.0	W/5363034-5363249,5363361-5363607,5363704-5363840,5363938-5364030,5364119-5364252,5364337-5364412,5364485-5364595,5364691-5364840,5364935-5365069,5365165-5365218	AT1G15570.1  CDS  gene_syn CYCA2;3, CYCLIN A2;3, T16N11.8, T16N11_8  gene CYCA2;3  function A2-type cyclin. Negatively regulates endocycles and acts as a key regulator of ploidy levels in Arabidopsis endoreduplication. Interacts physically with CDKA;1. Expressed preferentially in trichomes and young developing tissues.  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleus|GO:0005634|16415207|IDA  go_process DNA endoreduplication|GO:0042023|16415207|IMP  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase regulator activity|GO:0016538||ISS  product CYCA2;3 (CYCLIN A2;3); cyclin-dependent protein kinase regulator  note CYCLIN A2;3 (CYCA2;3); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle, DNA endoreduplication; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin (InterPro:IPR006670), G2/mitotic-specific cyclin A (InterPro:IPR015453), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400); BEST Arabidopsis thaliana protein match is: CYCA2;4 (Cyclin A2;4); cyclin-dependent protein kinase regulator (TAIR:AT1G80370.1); Has 3253 Blast hits to 3252 proteins in 294 species: Archae - 0; Bacteria - 0; Metazoa - 1680; Fungi - 361; Plants - 699; Viruses - 35; Other Eukaryotes - 478 (source: NCBI BLink).  protein_id AT1G15570.1p  transcript_id AT1G15570.1  protein_id AT1G15570.1p  transcript_id AT1G15570.1  
At1g15580	chr1:005366115	0.0	C/5366115-5366460,5365913-5365997,5365764-5365824	AT1G15580.1  CDS  gene_syn ATAUX2-27, AUX2-27, AUXIN-INDUCIBLE 2-27, IAA5, INDOLE-3-ACETIC ACID INDUCIBLE 5, T16N11.9, T16N11_9  gene IAA5  function auxin induced protein  go_component nucleus|GO:0005634||IEA  go_process response to auxin stimulus|GO:0009733|12036262|TAS  go_process response to auxin stimulus|GO:0009733|2102379|IEP  go_process response to brassinosteroid stimulus|GO:0009741|16367964|TAS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  product IAA5 (INDOLE-3-ACETIC ACID INDUCIBLE 5); transcription factor  note INDOLE-3-ACETIC ACID INDUCIBLE 5 (IAA5); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to cyclopentenone, response to auxin stimulus, response to brassinosteroid stimulus; LOCATED IN: nucleus; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19); transcription factor (TAIR:AT3G15540.1); Has 1116 Blast hits to 1116 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1115; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G15580.1p  transcript_id AT1G15580.1  protein_id AT1G15580.1p  transcript_id AT1G15580.1  
At1g15590	chr1:005367374	0.0	W/5367374-5367759,5367838-5367963,5368205-5368232	AT1G15590.1  CDS  gene_syn T16N11.26, T16N11_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G80400.1); Has 118 Blast hits to 117 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 118; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15590.1p  transcript_id AT1G15590.1  protein_id AT1G15590.1p  transcript_id AT1G15590.1  
At1g15600	chr1:005368923	0.0	W/5368923-5369278,5369352-5369480,5369584-5369761	AT1G15600.1  CDS  gene_syn T16N11.10, T16N11_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15620.1); Has 138 Blast hits to 138 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15600.1p  transcript_id AT1G15600.1  protein_id AT1G15600.1p  transcript_id AT1G15600.1  
At1g15610	chr1:005370793	0.0	W/5370793-5371184,5371261-5371386,5371466-5371679	AT1G15610.1  CDS  gene_syn T16N11.11, T16N11_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15630.1); Has 79 Blast hits to 79 proteins in 8 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15610.1p  transcript_id AT1G15610.1  protein_id AT1G15610.1p  transcript_id AT1G15610.1  
At1g15620	chr1:005373553	0.0	W/5373553-5373935,5374020-5374145,5374248-5374476	AT1G15620.1  CDS  gene_syn T16N11.13, T16N11_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15640.1); Has 74 Blast hits to 73 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15620.1p  transcript_id AT1G15620.1  protein_id AT1G15620.1p  transcript_id AT1G15620.1  
At1g15630	chr1:005376988	0.0	W/5376988-5377427,5377511-5377633,5377713-5377938	AT1G15630.1  CDS  gene_syn T16N11.14, T16N11_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15610.1); Has 72 Blast hits to 72 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15630.1p  transcript_id AT1G15630.1  protein_id AT1G15630.1p  transcript_id AT1G15630.1  
At1g15640	chr1:005379077	0.0	W/5379077-5379480,5379565-5379690,5379790-5380027	AT1G15640.1  CDS  gene_syn T16N11.15, T16N11_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15620.1); Has 88 Blast hits to 87 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15640.1p  transcript_id AT1G15640.1  protein_id AT1G15640.1p  transcript_id AT1G15640.1  
At1g15650	chr1:005380907	0.0	W/5380907-5380988	AT1G15650.1  tRNA  gene_syn 51691.TRNA-SER-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT1G15650.1  
At1g15660	chr1:005381230	0.0	W/5381230-5381397,5381980-5382134,5382250-5382335,5382417-5382513,5382622-5382779,5382866-5383611,5383702-5383771,5383940-5384088,5384381-5384630,5384740-5384847,5384927-5385057	AT1G15660.1  CDS  gene_syn CENP-C, CENP-C HOMOLOGUE, CENTROMERE PROTEIN C, T16N11.16, T16N11_16  gene CENP-C  function Encodes a homologue of the human centromeric protein C (CENP-C). CENP-C co-localizes with the 180 bp centromeric regions of chromosomes throughout the cell cycle, but does not completely cover the 180 bp regions.  go_component chromosome, centromeric region|GO:0000775|15329494|IDA  go_component nucleus|GO:0005634|15329494|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product CENP-C (CENTROMERE PROTEIN C)  note CENTROMERE PROTEIN C (CENP-C); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chromosome, centromeric region, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; Has 339 Blast hits to 312 proteins in 108 species: Archae - 0; Bacteria - 2; Metazoa - 101; Fungi - 22; Plants - 53; Viruses - 8; Other Eukaryotes - 153 (source: NCBI BLink).  protein_id AT1G15660.1p  transcript_id AT1G15660.1  protein_id AT1G15660.1p  transcript_id AT1G15660.1  
At1g15670	chr1:005390119	0.0	W/5390119-5391198	AT1G15670.1  CDS  gene_syn F7H2.1, F7H2_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT1G80440.1); Has 847 Blast hits to 804 proteins in 93 species: Archae - 6; Bacteria - 58; Metazoa - 348; Fungi - 6; Plants - 389; Viruses - 2; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT1G15670.1p  transcript_id AT1G15670.1  protein_id AT1G15670.1p  transcript_id AT1G15670.1  
At1g15680	chr1:005393407	0.0	W/5393407-5394639	AT1G15680.1  CDS  gene_syn F7H2.2, F7H2_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G23950.1); Has 459 Blast hits to 457 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 459; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15680.1p  transcript_id AT1G15680.1  protein_id AT1G15680.1p  transcript_id AT1G15680.1  
At1g15690	chr1:005399115	0.0	W/5399115-5399376,5399575-5400149,5400237-5400616,5400717-5400803,5400885-5401215,5401346-5401608,5402155-5402185	AT1G15690.2  CDS  gene_syn ARABIDOPSIS THALIANA V-PPASE 3, ATAVP3, AVP-3, AVP1, F7H2.3, F7H2_3, VACUOLAR H+ - PYROPHOSPHATASE AVP-3  gene AVP1  function Encodes a H(+)-translocating (pyrophosphate-energized) inorganic pyrophosphatase (H(+)-PPase; EC 3.6.1.1) located in the vacuolar membrane. Expression is found in all tissues examined, including meristems and floral organ primordium. Expression is particularly enhanced in pollen, and is repressed by light. Over expression and loss of function phenotypes suggest AVP1 is involved in regulation of apoplastic pH and auxin transport. The effect on auxin transport likely involves effects of extracellular pH on subcellular localization of auxin efflux carriers such as PIN1.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component vacuolar membrane|GO:0005774|16618929|IDA  go_component plasma membrane|GO:0005886|16210544|IDA  go_component plant-type vacuole membrane|GO:0009705|1311852|IDA  go_component endosome membrane|GO:0010008|16210544|IDA  go_process response to water deprivation|GO:0009414|11572991|IMP  go_process response to salt stress|GO:0009651|11572991|IMP  go_process auxin polar transport|GO:0009926|16210544|IGI  go_process establishment or maintenance of transmembrane electrochemical gradient|GO:0010248|1311852|TAS  go_function hydrogen-translocating pyrophosphatase activity|GO:0009678|1311852|IDA  go_function ATPase activity|GO:0016887||ISS  product AVP1; ATPase/ hydrogen-translocating pyrophosphatase  note AVP1; FUNCTIONS IN: hydrogen-translocating pyrophosphatase activity, ATPase activity; INVOLVED IN: response to salt stress, response to water deprivation, establishment or maintenance of transmembrane electrochemical gradient, auxin polar transport; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Inorganic H+ pyrophosphatase (InterPro:IPR004131); BEST Arabidopsis thaliana protein match is: AVP2 (ARABIDOPSIS VACUOLAR H+-PYROPHOSPHATASE 2); hydrogen-translocating pyrophosphatase (TAIR:AT1G78920.2); Has 5116 Blast hits to 5098 proteins in 481 species: Archae - 54; Bacteria - 704; Metazoa - 2; Fungi - 0; Plants - 196; Viruses - 0; Other Eukaryotes - 4160 (source: NCBI BLink).  protein_id AT1G15690.2p  transcript_id AT1G15690.2  protein_id AT1G15690.2p  transcript_id AT1G15690.2  
At1g15690	chr1:005399115	0.0	W/5399115-5399376,5399575-5400149,5400237-5400616,5400717-5400803,5400885-5401215,5401346-5401756,5401838-5401897,5401979-5402185	AT1G15690.1  CDS  gene_syn ARABIDOPSIS THALIANA V-PPASE 3, ATAVP3, AVP-3, AVP1, F7H2.3, F7H2_3, VACUOLAR H+ - PYROPHOSPHATASE AVP-3  gene AVP1  function Encodes a H(+)-translocating (pyrophosphate-energized) inorganic pyrophosphatase (H(+)-PPase; EC 3.6.1.1) located in the vacuolar membrane. Expression is found in all tissues examined, including meristems and floral organ primordium. Expression is particularly enhanced in pollen, and is repressed by light. Over expression and loss of function phenotypes suggest AVP1 is involved in regulation of apoplastic pH and auxin transport. The effect on auxin transport likely involves effects of extracellular pH on subcellular localization of auxin efflux carriers such as PIN1.  go_component plant-type vacuole|GO:0000325|16618929|IDA  go_component vacuole|GO:0005773|14760709|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component vacuolar membrane|GO:0005774|16618929|IDA  go_component plasma membrane|GO:0005886|16210544|IDA  go_component plant-type vacuole membrane|GO:0009705|1311852|IDA  go_component endosome membrane|GO:0010008|16210544|IDA  go_process response to water deprivation|GO:0009414|11572991|IMP  go_process response to salt stress|GO:0009651|11572991|IMP  go_process auxin polar transport|GO:0009926|16210544|IGI  go_process establishment or maintenance of transmembrane electrochemical gradient|GO:0010248|1311852|TAS  go_function hydrogen-translocating pyrophosphatase activity|GO:0009678|1311852|IDA  go_function ATPase activity|GO:0016887||ISS  product AVP1; ATPase/ hydrogen-translocating pyrophosphatase  note AVP1; FUNCTIONS IN: hydrogen-translocating pyrophosphatase activity, ATPase activity; INVOLVED IN: response to salt stress, response to water deprivation, establishment or maintenance of transmembrane electrochemical gradient, auxin polar transport; LOCATED IN: in 10 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Inorganic H+ pyrophosphatase (InterPro:IPR004131); BEST Arabidopsis thaliana protein match is: AVP2 (ARABIDOPSIS VACUOLAR H+-PYROPHOSPHATASE 2); hydrogen-translocating pyrophosphatase (TAIR:AT1G78920.2); Has 5706 Blast hits to 5688 proteins in 482 species: Archae - 54; Bacteria - 710; Metazoa - 2; Fungi - 0; Plants - 198; Viruses - 0; Other Eukaryotes - 4742 (source: NCBI BLink).  protein_id AT1G15690.1p  transcript_id AT1G15690.1  protein_id AT1G15690.1p  transcript_id AT1G15690.1  
At1g15700	chr1:005402629	0.0	C/5402629-5403789	AT1G15700.1  CDS  gene_syn ATPC2, F7H2.4, F7H2_4  gene ATPC2  function One of two genes that encode the gamma subunit of Arabidopsis chloroplast ATP synthase. It is thought to be involved in the regulation of the ATP synthase activity.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|1826905|IDA  go_component chloroplast ATP synthase complex|GO:0009544|1826905|TAS  go_process ATP synthesis coupled proton transport|GO:0015986|1826905|TAS  go_function enzyme regulator activity|GO:0030234|1826905|TAS  product ATPC2; enzyme regulator  note ATPC2; FUNCTIONS IN: enzyme regulator activity; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: chloroplast ATP synthase complex, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, gamma subunit (InterPro:IPR000131); BEST Arabidopsis thaliana protein match is: ATPC1; enzyme regulator (TAIR:AT4G04640.1); Has 6954 Blast hits to 6952 proteins in 1587 species: Archae - 5; Bacteria - 3156; Metazoa - 207; Fungi - 99; Plants - 112; Viruses - 0; Other Eukaryotes - 3375 (source: NCBI BLink).  protein_id AT1G15700.1p  transcript_id AT1G15700.1  protein_id AT1G15700.1p  transcript_id AT1G15700.1  
At1g15710	chr1:005404505	0.0	W/5404505-5405581	AT1G15710.1  CDS  gene_syn F7H2.5, F7H2_5  go_component chloroplast|GO:0009507|18431481|IDA  go_process tyrosine biosynthetic process|GO:0006571||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function prephenate dehydrogenase (NADP+) activity|GO:0004665||IEA  go_function binding|GO:0005488||IEA  go_process tyrosine biosynthetic process|GO:0006571||ISS  go_function prephenate dehydrogenase (NADP+) activity|GO:0004665||ISS  product prephenate dehydrogenase family protein  note prephenate dehydrogenase family protein; FUNCTIONS IN: binding, prephenate dehydrogenase (NADP+) activity, catalytic activity; INVOLVED IN: tyrosine biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prephenate dehydrogenase (InterPro:IPR003099), NAD(P)-binding (InterPro:IPR016040), Arogenate/prephenate dehydrogenase, plant (InterPro:IPR012070); BEST Arabidopsis thaliana protein match is: arogenate dehydrogenase (TAIR:AT5G34930.1); Has 567 Blast hits to 562 proteins in 224 species: Archae - 54; Bacteria - 275; Metazoa - 3; Fungi - 70; Plants - 59; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).  protein_id AT1G15710.1p  transcript_id AT1G15710.1  protein_id AT1G15710.1p  transcript_id AT1G15710.1  
At1g15720	chr1:005406138	0.0	W/5406138-5407310	AT1G15720.1  CDS  gene_syn F7H2.6, F7H2_6, TRF-LIKE 5, TRFL5  gene TRFL5  function Arabidopsis thaliana myb family transcription factor (At1g15720)  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product TRFL5 (TRF-LIKE 5); DNA binding / transcription factor  note TRF-LIKE 5 (TRFL5); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT5G58340.1); Has 311 Blast hits to 306 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 36; Plants - 215; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G15720.1p  transcript_id AT1G15720.1  protein_id AT1G15720.1p  transcript_id AT1G15720.1  
At1g15730	chr1:005409623	0.0	C/5409623-5409937,5409459-5409524,5409200-5409380,5408903-5409099,5408688-5408738,5408501-5408592,5408203-5408318,5408031-5408116,5407781-5407885,5407535-5407672	AT1G15730.1  CDS  gene_syn F7H2.7, F7H2_7  product PRLI-interacting factor L, putative  note PRLI-interacting factor L, putative; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12) biosynthesis CobW-like (InterPro:IPR003495), Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal (InterPro:IPR011629); BEST Arabidopsis thaliana protein match is: PTAC17 (PLASTID TRANSCRIPTIONALLY ACTIVE17) (TAIR:AT1G80480.1); Has 12947 Blast hits to 8538 proteins in 1084 species: Archae - 92; Bacteria - 5184; Metazoa - 1588; Fungi - 449; Plants - 283; Viruses - 6; Other Eukaryotes - 5345 (source: NCBI BLink).  protein_id AT1G15730.1p  transcript_id AT1G15730.1  protein_id AT1G15730.1p  transcript_id AT1G15730.1  
At1g15740	chr1:005411509	0.0	W/5411509-5411724,5411801-5411929,5412013-5412220,5412342-5412488,5412607-5412681,5412757-5412828,5412927-5413001,5413096-5413167,5413264-5413335,5413445-5413516,5413594-5413665,5413752-5413895,5413981-5414052,5414136-5414282,5414360-5414544	AT1G15740.1  CDS  gene_syn F7H2.8, F7H2_8  go_component cellular_component|GO:0005575||ND  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT4G23840.1); Has 25965 Blast hits to 13594 proteins in 578 species: Archae - 6; Bacteria - 5108; Metazoa - 10615; Fungi - 448; Plants - 7228; Viruses - 79; Other Eukaryotes - 2481 (source: NCBI BLink).  protein_id AT1G15740.1p  transcript_id AT1G15740.1  protein_id AT1G15740.1p  transcript_id AT1G15740.1  
At1g15750	chr1:005420280	0.0	C/5420280-5420359,5420000-5420179,5419782-5419895,5419512-5419670,5419237-5419414,5419042-5419165,5418661-5418942,5418459-5418568,5418308-5418377,5418159-5418232,5417885-5418076,5417439-5417801,5417207-5417347,5417031-5417126,5416808-5416954,5416606-5416716,5416353-5416532,5416143-5416271,5415950-5416045,5415677-5415865,5415428-5415594,5415086-5415299	AT1G15750.1  CDS  gene_syn F7H2.9, F7H2_9, TOPLESS, TPL, WSIP1, WUS-INTERACTING PROTEIN 1  gene TPL  function Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background.  go_component nucleus|GO:0005634|16763149|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process response to auxin stimulus|GO:0009733|18258861|IPI  go_process xylem and phloem pattern formation|GO:0010051|18258861|IGI  go_process primary shoot apical meristem specification|GO:0010072|16763149|IGI  go_process primary shoot apical meristem specification|GO:0010072|16763149|IMP  go_function protein binding|GO:0005515|16461579|IPI  go_function transcription repressor activity|GO:0016564|18258861|IDA  go_function protein homodimerization activity|GO:0042803|18258861|IPI  product TPL (TOPLESS); protein binding / protein homodimerization/ transcription repressor  note TOPLESS (TPL); FUNCTIONS IN: protein binding, transcription repressor activity, protein homodimerization activity; INVOLVED IN: xylem and phloem pattern formation, response to auxin stimulus, primary shoot apical meristem specification; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594); BEST Arabidopsis thaliana protein match is: TPR1 (TOPLESS-RELATED 1) (TAIR:AT1G80490.2); Has 16596 Blast hits to 10032 proteins in 459 species: Archae - 32; Bacteria - 3036; Metazoa - 6827; Fungi - 3244; Plants - 1156; Viruses - 6; Other Eukaryotes - 2295 (source: NCBI BLink).  protein_id AT1G15750.1p  transcript_id AT1G15750.1  protein_id AT1G15750.1p  transcript_id AT1G15750.1  
At1g15750	chr1:005420280	0.0	C/5420280-5420359,5420000-5420179,5419782-5419895,5419512-5419670,5419237-5419414,5419042-5419165,5418661-5418942,5418459-5418568,5418308-5418377,5418159-5418232,5417885-5418076,5417439-5417801,5417207-5417347,5417031-5417126,5416808-5416954,5416606-5416716,5416353-5416532,5416143-5416271,5415950-5416045,5415677-5415865,5415428-5415594,5415086-5415299	AT1G15750.2  CDS  gene_syn F7H2.9, F7H2_9, TOPLESS, TPL, WSIP1, WUS-INTERACTING PROTEIN 1  gene TPL  function Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background.  go_component nucleus|GO:0005634|16763149|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process response to auxin stimulus|GO:0009733|18258861|IPI  go_process xylem and phloem pattern formation|GO:0010051|18258861|IGI  go_process primary shoot apical meristem specification|GO:0010072|16763149|IGI  go_process primary shoot apical meristem specification|GO:0010072|16763149|IMP  go_function protein binding|GO:0005515|16461579|IPI  go_function transcription repressor activity|GO:0016564|18258861|IDA  go_function protein homodimerization activity|GO:0042803|18258861|IPI  product TPL (TOPLESS); protein binding / protein homodimerization/ transcription repressor  note TOPLESS (TPL); FUNCTIONS IN: protein binding, transcription repressor activity, protein homodimerization activity; INVOLVED IN: xylem and phloem pattern formation, response to auxin stimulus, primary shoot apical meristem specification; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594); BEST Arabidopsis thaliana protein match is: TPR1 (TOPLESS-RELATED 1) (TAIR:AT1G80490.2); Has 16596 Blast hits to 10032 proteins in 459 species: Archae - 32; Bacteria - 3036; Metazoa - 6827; Fungi - 3244; Plants - 1156; Viruses - 6; Other Eukaryotes - 2295 (source: NCBI BLink).  protein_id AT1G15750.2p  transcript_id AT1G15750.2  protein_id AT1G15750.2p  transcript_id AT1G15750.2  
At1g15750	chr1:005420280	0.0	C/5420280-5420359,5420000-5420179,5419782-5419895,5419512-5419670,5419237-5419414,5419042-5419165,5418661-5418942,5418459-5418568,5418308-5418377,5418159-5418232,5417885-5418076,5417439-5417801,5417207-5417347,5417031-5417126,5416808-5416954,5416606-5416716,5416353-5416532,5416143-5416271,5415950-5416045,5415677-5415865,5415428-5415594,5415086-5415299	AT1G15750.3  CDS  gene_syn F7H2.9, F7H2_9, TOPLESS, TPL, WSIP1, WUS-INTERACTING PROTEIN 1  gene TPL  function Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background.  go_component nucleus|GO:0005634|16763149|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process response to auxin stimulus|GO:0009733|18258861|IPI  go_process xylem and phloem pattern formation|GO:0010051|18258861|IGI  go_process primary shoot apical meristem specification|GO:0010072|16763149|IGI  go_process primary shoot apical meristem specification|GO:0010072|16763149|IMP  go_function protein binding|GO:0005515|16461579|IPI  go_function transcription repressor activity|GO:0016564|18258861|IDA  go_function protein homodimerization activity|GO:0042803|18258861|IPI  product TPL (TOPLESS); protein binding / protein homodimerization/ transcription repressor  note TOPLESS (TPL); FUNCTIONS IN: protein binding, transcription repressor activity, protein homodimerization activity; INVOLVED IN: xylem and phloem pattern formation, response to auxin stimulus, primary shoot apical meristem specification; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594); BEST Arabidopsis thaliana protein match is: TPR1 (TOPLESS-RELATED 1) (TAIR:AT1G80490.2); Has 16596 Blast hits to 10032 proteins in 459 species: Archae - 32; Bacteria - 3036; Metazoa - 6827; Fungi - 3244; Plants - 1156; Viruses - 6; Other Eukaryotes - 2295 (source: NCBI BLink).  protein_id AT1G15750.3p  transcript_id AT1G15750.3  protein_id AT1G15750.3p  transcript_id AT1G15750.3  
At1g15750	chr1:005420280	0.0	C/5420280-5420359,5420000-5420179,5419782-5419895,5419512-5419670,5419237-5419414,5419042-5419165,5418661-5418942,5418459-5418568,5418308-5418377,5418159-5418232,5417885-5418076,5417439-5417801,5417207-5417347,5417031-5417126,5416808-5416954,5416606-5416716,5416353-5416532,5416143-5416271,5415950-5416045,5415677-5415865,5415428-5415594,5415086-5415299	AT1G15750.4  CDS  gene_syn F7H2.9, F7H2_9, TOPLESS, TPL, WSIP1, WUS-INTERACTING PROTEIN 1  gene TPL  function Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background.  go_component nucleus|GO:0005634|16763149|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process response to auxin stimulus|GO:0009733|18258861|IPI  go_process xylem and phloem pattern formation|GO:0010051|18258861|IGI  go_process primary shoot apical meristem specification|GO:0010072|16763149|IGI  go_process primary shoot apical meristem specification|GO:0010072|16763149|IMP  go_function protein binding|GO:0005515|16461579|IPI  go_function transcription repressor activity|GO:0016564|18258861|IDA  go_function protein homodimerization activity|GO:0042803|18258861|IPI  product TPL (TOPLESS); protein binding / protein homodimerization/ transcription repressor  note TOPLESS (TPL); FUNCTIONS IN: protein binding, transcription repressor activity, protein homodimerization activity; INVOLVED IN: xylem and phloem pattern formation, response to auxin stimulus, primary shoot apical meristem specification; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594); BEST Arabidopsis thaliana protein match is: TPR1 (TOPLESS-RELATED 1) (TAIR:AT1G80490.2); Has 16596 Blast hits to 10032 proteins in 459 species: Archae - 32; Bacteria - 3036; Metazoa - 6827; Fungi - 3244; Plants - 1156; Viruses - 6; Other Eukaryotes - 2295 (source: NCBI BLink).  protein_id AT1G15750.4p  transcript_id AT1G15750.4  protein_id AT1G15750.4p  transcript_id AT1G15750.4  
At1g15757	chr1:005424480	0.0	C/5424480-5424576,5424242-5424396	AT1G15757.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59105.1); Has 26 Blast hits to 26 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15757.1p  transcript_id AT1G15757.1  protein_id AT1G15757.1p  transcript_id AT1G15757.1  
At1g15760	chr1:005425714	0.0	W/5425714-5426322	AT1G15760.1  CDS  gene_syn F7H2.10, F7H2_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Sterile alpha motif homology (InterPro:IPR010993); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80520.1); Has 30 Blast hits to 30 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15760.1p  transcript_id AT1G15760.1  protein_id AT1G15760.1p  transcript_id AT1G15760.1  
At1g15770	chr1:005428129	0.0	C/5428129-5428215,5427296-5427805,5426892-5427176	AT1G15770.1  CDS  gene_syn F7H2.11, F7H2_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 41 Blast hits to 27 proteins in 7 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15770.1p  transcript_id AT1G15770.1  protein_id AT1G15770.1p  transcript_id AT1G15770.1  
At1g15772	chr1:005429185	0.0	C/5429185-5429232,5428877-5429092	AT1G15772.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 5 Blast hits to 5 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15772.1p  transcript_id AT1G15772.1  protein_id AT1G15772.1p  transcript_id AT1G15772.1  
At1g15780	chr1:005435809	0.0	C/5435809-5435921,5435573-5435684,5435279-5435396,5433793-5435178,5433623-5433693,5433426-5433500,5431814-5433097,5431357-5431701,5431006-5431212,5430823-5430911,5430446-5430653	AT1G15780.1  CDS  gene_syn F7H2.12, F7H2_12  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.2); Has 95200 Blast hits to 37450 proteins in 1266 species: Archae - 22; Bacteria - 4610; Metazoa - 36935; Fungi - 9504; Plants - 6357; Viruses - 312; Other Eukaryotes - 37460 (source: NCBI BLink).  protein_id AT1G15780.1p  transcript_id AT1G15780.1  protein_id AT1G15780.1p  transcript_id AT1G15780.1  
At1g15790	chr1:005439753	0.0	C/5439753-5439820,5439540-5439651,5439285-5439393,5439004-5439097,5438755-5438866,5438477-5438521	AT1G15790.1  CDS  gene_syn F7H2.13, F7H2_13  product unknown protein  note unknown protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 87 Blast hits to 50 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15790.1p  transcript_id AT1G15790.1  protein_id AT1G15790.1p  transcript_id AT1G15790.1  
At1g15790	chr1:005439753	0.0	C/5439753-5439820,5439540-5439651,5439285-5439393,5439004-5439097,5438755-5438866,5438477-5438521	AT1G15790.2  CDS  gene_syn F7H2.13, F7H2_13  product unknown protein  note unknown protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 87 Blast hits to 50 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15790.2p  transcript_id AT1G15790.2  protein_id AT1G15790.2p  transcript_id AT1G15790.2  
At1g15800	chr1:005443249	0.0	C/5443249-5443584,5441914-5441967,5441753-5441815,5441607-5441675,5441425-5441526	AT1G15800.1  CDS  gene_syn F7H2.14, F7H2_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80610.1); Has 30 Blast hits to 28 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15800.1p  transcript_id AT1G15800.1  protein_id AT1G15800.1p  transcript_id AT1G15800.1  
At1g15810	chr1:005444496	0.0	W/5444496-5445363,5445526-5445608,5445759-5445870,5445980-5446032,5446128-5446271	AT1G15810.1  CDS  gene_syn F7H2.15, F7H2_15  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component small ribosomal subunit|GO:0015935||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein S15 family protein  note ribosomal protein S15 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: small ribosomal subunit, ribosome, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S15 (InterPro:IPR000589), Ribosomal protein S15, bacterial-type (InterPro:IPR005290), S15/NS1, RNA-binding (InterPro:IPR009068); BEST Arabidopsis thaliana protein match is: ribosomal protein S15 family protein (TAIR:AT1G80620.1); Has 5651 Blast hits to 5651 proteins in 1607 species: Archae - 0; Bacteria - 3067; Metazoa - 94; Fungi - 81; Plants - 397; Viruses - 0; Other Eukaryotes - 2012 (source: NCBI BLink).  protein_id AT1G15810.1p  transcript_id AT1G15810.1  protein_id AT1G15810.1p  transcript_id AT1G15810.1  
At1g15820	chr1:005447450	0.0	C/5447450-5447676,5446685-5447234	AT1G15820.1  CDS  gene_syn CHLOROPHYLL PROTEIN 24, CP24, F7H2.16, F7H2_16, LHCB6, LIGHT HARVESTING COMPLEX PSII SUBUNIT 6  gene LHCB6  function Lhcb6 protein (Lhcb6), light harvesting complex of photosystem II.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component photosystem II antenna complex|GO:0009783|11601979|NAS  go_component plastoglobule|GO:0010287|16461379|IDA  go_process nonphotochemical quenching|GO:0010196|18381925|IMP  go_process photosynthesis|GO:0015979|11340191|NAS  go_process photosynthesis|GO:0015979|18381925|IMP  go_function chlorophyll binding|GO:0016168||ISS  product LHCB6 (LIGHT HARVESTING COMPLEX PSII SUBUNIT 6); chlorophyll binding  note LIGHT HARVESTING COMPLEX PSII SUBUNIT 6 (LHCB6); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, nonphotochemical quenching; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: LHCA6; chlorophyll binding (TAIR:AT1G19150.1); Has 1756 Blast hits to 1642 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1487; Viruses - 0; Other Eukaryotes - 267 (source: NCBI BLink).  protein_id AT1G15820.1p  transcript_id AT1G15820.1  protein_id AT1G15820.1p  transcript_id AT1G15820.1  
At1g15825	chr1:005448149	0.0	C/5448149-5448529	AT1G15825.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / extensin family protein (TAIR:AT3G19020.1); Has 11265 Blast hits to 5002 proteins in 510 species: Archae - 54; Bacteria - 1434; Metazoa - 3392; Fungi - 725; Plants - 3734; Viruses - 553; Other Eukaryotes - 1373 (source: NCBI BLink).  protein_id AT1G15825.1p  transcript_id AT1G15825.1  protein_id AT1G15825.1p  transcript_id AT1G15825.1  
At1g15830	chr1:005448726	0.0	W/5448726-5450177	AT1G15830.1  CDS  gene_syn F7H2.23, F7H2_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: pollen tube; Has 147578 Blast hits to 47511 proteins in 1815 species: Archae - 216; Bacteria - 33133; Metazoa - 53776; Fungi - 10273; Plants - 15545; Viruses - 2335; Other Eukaryotes - 32300 (source: NCBI BLink).  protein_id AT1G15830.1p  transcript_id AT1G15830.1  protein_id AT1G15830.1p  transcript_id AT1G15830.1  
At1g15840	chr1:005451723	0.0	W/5451723-5451760,5451781-5452123	AT1G15840.1  CDS  gene_syn F7H2.17, F7H2_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 9 growth stages; Has 102115 Blast hits to 26509 proteins in 1537 species: Archae - 135; Bacteria - 33167; Metazoa - 30989; Fungi - 6446; Plants - 9864; Viruses - 1537; Other Eukaryotes - 19977 (source: NCBI BLink).  protein_id AT1G15840.1p  transcript_id AT1G15840.1  protein_id AT1G15840.1p  transcript_id AT1G15840.1  
At1g15850	chr1:005454029	0.0	C/5454029-5454088,5453723-5453809,5453529-5453606,5453245-5453442	AT1G15850.1  CDS  gene_syn F7H2.18, F7H2_18  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT1G80670.1); Has 9650 Blast hits to 5139 proteins in 348 species: Archae - 24; Bacteria - 2994; Metazoa - 2796; Fungi - 1980; Plants - 541; Viruses - 0; Other Eukaryotes - 1315 (source: NCBI BLink).  protein_id AT1G15850.1p  transcript_id AT1G15850.1  protein_id AT1G15850.1p  transcript_id AT1G15850.1  
At1g15860	chr1:005455055	0.0	W/5455055-5455127,5455429-5455513,5455652-5455726,5455818-5455854,5455964-5456047,5456139-5456199,5456304-5456410,5456504-5456569,5456646-5456741	AT1G15860.1  CDS  gene_syn F7H2.19, F7H2_19  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Defective in cullin neddylation (InterPro:IPR014764), Protein of unknown function DUF298 (InterPro:IPR005176); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12760.1); Has 576 Blast hits to 576 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 403; Fungi - 78; Plants - 51; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT1G15860.1p  transcript_id AT1G15860.1  protein_id AT1G15860.1p  transcript_id AT1G15860.1  
At1g15860	chr1:005455055	0.0	W/5455055-5455127,5455429-5455513,5455652-5455726,5455818-5455854,5455964-5456047,5456139-5456199,5456304-5456410,5456504-5456569,5456646-5456741	AT1G15860.2  CDS  gene_syn F7H2.19, F7H2_19  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Defective in cullin neddylation (InterPro:IPR014764), Protein of unknown function DUF298 (InterPro:IPR005176); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12760.1).  protein_id AT1G15860.2p  transcript_id AT1G15860.2  protein_id AT1G15860.2p  transcript_id AT1G15860.2  
At1g15870	chr1:005457153	0.0	W/5457153-5457395,5457666-5457988,5458083-5458245	AT1G15870.1  CDS  gene_syn F7H2.20, F7H2_20  go_component mitochondrial matrix|GO:0005759||IEA  go_component mitochondrial matrix|GO:0005759||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial glycoprotein family protein / MAM33 family protein  note mitochondrial glycoprotein family protein / MAM33 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrial matrix; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial glycoprotein (InterPro:IPR003428); BEST Arabidopsis thaliana protein match is: mitochondrial glycoprotein family protein / MAM33 family protein (TAIR:AT1G80720.1); Has 278 Blast hits to 278 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 81; Plants - 116; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT1G15870.1p  transcript_id AT1G15870.1  protein_id AT1G15870.1p  transcript_id AT1G15870.1  
At1g15880	chr1:005460051	0.0	C/5460051-5460089,5459561-5459800,5459198-5459362,5458954-5459067,5458718-5458831	AT1G15880.1  CDS  gene_syn F7H2.21, F7H2_21, GOS11, atgos11, golgi snare 11  gene GOS11  function Golgi SNARE 11 protein (GOS11)  go_component integral to membrane|GO:0016021|10831610|TAS  go_process intra-Golgi vesicle-mediated transport|GO:0006891|11115874|TAS  go_process membrane fusion|GO:0006944|10831610|IPI  go_function SNARE binding|GO:0000149|11115874|TAS  product GOS11 (golgi snare 11); SNARE binding  note golgi snare 11 (GOS11); FUNCTIONS IN: SNARE binding; INVOLVED IN: membrane fusion, intra-Golgi vesicle-mediated transport; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vesicle transport v-SNARE (InterPro:IPR007705); BEST Arabidopsis thaliana protein match is: GOS12 (GOLGI SNARE 12); SNARE binding (TAIR:AT2G45200.1); Has 297 Blast hits to 297 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 82; Plants - 56; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT1G15880.1p  transcript_id AT1G15880.1  protein_id AT1G15880.1p  transcript_id AT1G15880.1  
At1g15885	chr1:005460550	0.0	W/5460550-5460690,5460970-5461095	AT1G15885.1  CDS  product unknown protein  note unknown protein; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15885.1p  transcript_id AT1G15885.1  protein_id AT1G15885.1p  transcript_id AT1G15885.1  
At1g15890	chr1:005461406	0.0	W/5461406-5463961	AT1G15890.1  CDS  gene_syn F7H2.22, F7H2_22  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative  note disease resistance protein (CC-NBS-LRR class), putative; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response, apoptosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT5G43730.1); Has 12716 Blast hits to 11782 proteins in 513 species: Archae - 12; Bacteria - 543; Metazoa - 2689; Fungi - 133; Plants - 9121; Viruses - 0; Other Eukaryotes - 218 (source: NCBI BLink).  protein_id AT1G15890.1p  transcript_id AT1G15890.1  protein_id AT1G15890.1p  transcript_id AT1G15890.1  
At1g15900	chr1:005464356	0.0	W/5464356-5464697	AT1G15900.1  CDS  gene_syn F7H2.24, F7H2_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 6 Blast hits to 6 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G15900.1p  transcript_id AT1G15900.1  protein_id AT1G15900.1p  transcript_id AT1G15900.1  
At1g15910	chr1:005465951	0.0	W/5465951-5466851,5466933-5467114,5467228-5467317,5467431-5467718,5468073-5468285,5468493-5468723	AT1G15910.1  CDS  gene_syn T24D18.1, T24D18_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product XH/XS domain-containing protein / XS zinc finger domain-containing protein  note XH/XS domain-containing protein / XS zinc finger domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Region of unknown function XS (InterPro:IPR005380), Region of unknown function XH (InterPro:IPR005379), Region of unknown function, putative Zinc finger, XS and XH (InterPro:IPR005381); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein / XS zinc finger domain-containing protein (TAIR:AT4G00380.1); Has 40525 Blast hits to 24283 proteins in 1162 species: Archae - 321; Bacteria - 3404; Metazoa - 21089; Fungi - 2450; Plants - 1098; Viruses - 158; Other Eukaryotes - 12005 (source: NCBI BLink).  protein_id AT1G15910.1p  transcript_id AT1G15910.1  protein_id AT1G15910.1p  transcript_id AT1G15910.1  
At1g15920	chr1:005469962	0.0	W/5469962-5470822	AT1G15920.1  CDS  gene_syn T24D18.2, T24D18_2  go_component nucleus|GO:0005634||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process RNA modification|GO:0009451||ISS  go_function ribonuclease activity|GO:0004540||ISS  product CCR4-NOT transcription complex protein, putative  note CCR4-NOT transcription complex protein, putative; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: CCR4-NOT transcription complex protein, putative (TAIR:AT2G32070.1); Has 634 Blast hits to 622 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 218; Fungi - 94; Plants - 224; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT1G15920.1p  transcript_id AT1G15920.1  protein_id AT1G15920.1p  transcript_id AT1G15920.1  
At1g15920	chr1:005469962	0.0	W/5469962-5470822	AT1G15920.2  CDS  gene_syn T24D18.2, T24D18_2  go_component nucleus|GO:0005634||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process RNA modification|GO:0009451||ISS  go_function ribonuclease activity|GO:0004540||ISS  product CCR4-NOT transcription complex protein, putative  note CCR4-NOT transcription complex protein, putative; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: CCR4-NOT transcription complex protein, putative (TAIR:AT2G32070.1); Has 634 Blast hits to 622 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 218; Fungi - 94; Plants - 224; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT1G15920.2p  transcript_id AT1G15920.2  protein_id AT1G15920.2p  transcript_id AT1G15920.2  
At1g15930	chr1:005471702	0.0	W/5471702-5471709,5472098-5472398,5472520-5472585,5472682-5472741	AT1G15930.1  CDS  gene_syn T24D18.3, T24D18_3  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S12 (RPS12A)  note 40S ribosomal protein S12 (RPS12A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: response to cadmium ion, response to salt stress, translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S12e (InterPro:IPR000530), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S12 (RPS12C) (TAIR:AT2G32060.3); Has 755 Blast hits to 755 proteins in 241 species: Archae - 164; Bacteria - 0; Metazoa - 257; Fungi - 123; Plants - 63; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink).  protein_id AT1G15930.1p  transcript_id AT1G15930.1  protein_id AT1G15930.1p  transcript_id AT1G15930.1  
At1g15930	chr1:005471702	0.0	W/5471702-5471709,5472098-5472398,5472520-5472585,5472682-5472741	AT1G15930.2  CDS  gene_syn T24D18.3, T24D18_3  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S12 (RPS12A)  note 40S ribosomal protein S12 (RPS12A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: response to cadmium ion, response to salt stress, translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S12e (InterPro:IPR000530), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S12 (RPS12C) (TAIR:AT2G32060.3); Has 755 Blast hits to 755 proteins in 241 species: Archae - 164; Bacteria - 0; Metazoa - 257; Fungi - 123; Plants - 63; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink).  protein_id AT1G15930.2p  transcript_id AT1G15930.2  protein_id AT1G15930.2p  transcript_id AT1G15930.2  
At1g15940	chr1:005473672	0.0	W/5473672-5473785,5474095-5474298,5474414-5474595,5474688-5474814,5474899-5475096,5475218-5475268,5475353-5476060,5476147-5476242,5476328-5476401,5476485-5476536,5476626-5476712,5476801-5476844,5476933-5477007,5477090-5478050	AT1G15940.1  CDS  gene_syn T24D18.4, T24D18_4  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT1G80810.1); Has 97673 Blast hits to 51546 proteins in 1848 species: Archae - 315; Bacteria - 10939; Metazoa - 44638; Fungi - 10764; Plants - 3417; Viruses - 601; Other Eukaryotes - 26999 (source: NCBI BLink).  protein_id AT1G15940.1p  transcript_id AT1G15940.1  protein_id AT1G15940.1p  transcript_id AT1G15940.1  
At1g15950	chr1:005478855	0.0	W/5478855-5478987,5479109-5479263,5479792-5479977,5480154-5480506,5481708-5481816,5481872-5481949	AT1G15950.2  CDS  gene_syn ATCCR1, CCR1, CINNAMOYL COA REDUCTASE, CINNAMOYL COA REDUCTASE 1, IRREGULAR XYLEM 4, IRX4, T24D18.5, T24D18_5  gene CCR1  function Encodes a cinnamoyl CoA reductase. Involved in lignin biosynthesis.  go_component cellular_component|GO:0005575||ND  go_process response to cold|GO:0009409|7513083|IEP  go_process lignin biosynthetic process|GO:0009809|11430991|IDA  go_function cinnamoyl-CoA reductase activity|GO:0016621|11430991|IDA  product CCR1 (CINNAMOYL COA REDUCTASE 1); cinnamoyl-CoA reductase  note CINNAMOYL COA REDUCTASE 1 (CCR1); FUNCTIONS IN: cinnamoyl-CoA reductase activity; INVOLVED IN: lignin biosynthetic process, response to cold; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: CCR2 (CINNAMOYL COA REDUCTASE); cinnamoyl-CoA reductase (TAIR:AT1G80820.1); Has 8120 Blast hits to 8110 proteins in 1156 species: Archae - 127; Bacteria - 3139; Metazoa - 367; Fungi - 599; Plants - 1429; Viruses - 48; Other Eukaryotes - 2411 (source: NCBI BLink).  protein_id AT1G15950.2p  transcript_id AT1G15950.2  protein_id AT1G15950.2p  transcript_id AT1G15950.2  
At1g15950	chr1:005478855	0.0	W/5478855-5478987,5479109-5479263,5479792-5479977,5480154-5480506,5481708-5481915	AT1G15950.1  CDS  gene_syn ATCCR1, CCR1, CINNAMOYL COA REDUCTASE, CINNAMOYL COA REDUCTASE 1, IRREGULAR XYLEM 4, IRX4, T24D18.5, T24D18_5  gene CCR1  function Encodes a cinnamoyl CoA reductase. Involved in lignin biosynthesis.  go_component cellular_component|GO:0005575||ND  go_process response to cold|GO:0009409|7513083|IEP  go_process lignin biosynthetic process|GO:0009809|11430991|IDA  go_function cinnamoyl-CoA reductase activity|GO:0016621|11430991|IDA  product CCR1 (CINNAMOYL COA REDUCTASE 1); cinnamoyl-CoA reductase  note CINNAMOYL COA REDUCTASE 1 (CCR1); FUNCTIONS IN: cinnamoyl-CoA reductase activity; INVOLVED IN: lignin biosynthetic process, response to cold; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: CCR2 (CINNAMOYL COA REDUCTASE); cinnamoyl-CoA reductase (TAIR:AT1G80820.1); Has 8126 Blast hits to 8116 proteins in 1154 species: Archae - 129; Bacteria - 3139; Metazoa - 367; Fungi - 593; Plants - 1431; Viruses - 48; Other Eukaryotes - 2419 (source: NCBI BLink).  protein_id AT1G15950.1p  transcript_id AT1G15950.1  protein_id AT1G15950.1p  transcript_id AT1G15950.1  
At1g15960	chr1:005484974	0.0	C/5484974-5485066,5484607-5484685,5484480-5484520,5484314-5484392,5484076-5484180,5483847-5483956,5483588-5483769,5483447-5483516,5483198-5483371,5482997-5483101,5482790-5482921,5482612-5482707,5482202-5482519	AT1G15960.1  CDS  gene_syn ATNRAMP6, NRAMP6, T24D18.6, T24D18_6  gene NRAMP6  function member of Nramp2 family  go_component membrane|GO:0016020||IEA  go_process cellular metal ion homeostasis|GO:0006875|11500563|NAS  go_process metal ion transport|GO:0030001|11500563|NAS  go_process metal ion transport|GO:0030001||ISS  go_function inorganic anion transmembrane transporter activity|GO:0015103||ISS  go_function metal ion transmembrane transporter activity|GO:0046873|11500563|NAS  go_function metal ion transmembrane transporter activity|GO:0046873||ISS  product NRAMP6; inorganic anion transmembrane transporter/ metal ion transmembrane transporter  note NRAMP6; FUNCTIONS IN: inorganic anion transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: cellular metal ion homeostasis, metal ion transport; LOCATED IN: membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Natural resistance-associated macrophage protein (InterPro:IPR001046); BEST Arabidopsis thaliana protein match is: NRAMP1 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 1); inorganic anion transmembrane transporter/ manganese ion transmembrane transporter/ metal ion transmembrane transporter (TAIR:AT1G80830.1); Has 3057 Blast hits to 3027 proteins in 861 species: Archae - 50; Bacteria - 2049; Metazoa - 300; Fungi - 168; Plants - 196; Viruses - 0; Other Eukaryotes - 294 (source: NCBI BLink).  protein_id AT1G15960.1p  transcript_id AT1G15960.1  protein_id AT1G15960.1p  transcript_id AT1G15960.1  
At1g15970	chr1:005488032	0.0	C/5488032-5488494,5487386-5487443,5487215-5487298,5486959-5487100,5486544-5486855	AT1G15970.1  CDS  gene_syn T24D18.7, T24D18_7  go_process DNA repair|GO:0006281||IEA  go_process base-excision repair|GO:0006284||IEA  go_function catalytic activity|GO:0003824||IEA  go_function DNA-3-methyladenine glycosylase I activity|GO:0008725||IEA  go_component cellular_component|GO:0005575||ND  go_process DNA repair|GO:0006281||ISS  go_function DNA-3-methyladenine glycosylase I activity|GO:0008725||ISS  product methyladenine glycosylase family protein  note methyladenine glycosylase family protein; FUNCTIONS IN: DNA-3-methyladenine glycosylase I activity, catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Methyladenine glycosylase (InterPro:IPR005019); BEST Arabidopsis thaliana protein match is: methyladenine glycosylase family protein (TAIR:AT1G80850.1); Has 1969 Blast hits to 1969 proteins in 808 species: Archae - 7; Bacteria - 1545; Metazoa - 10; Fungi - 2; Plants - 83; Viruses - 0; Other Eukaryotes - 322 (source: NCBI BLink).  protein_id AT1G15970.1p  transcript_id AT1G15970.1  protein_id AT1G15970.1p  transcript_id AT1G15970.1  
At1g15980	chr1:005489314	0.0	W/5489314-5489738,5489837-5489987,5490075-5490265,5490338-5490595,5490675-5490780,5490867-5490952,5491031-5491199	AT1G15980.1  CDS  gene_syn NDF1, NDH-DEPENDENT CYCLIC ELECTRON FLOW 1, T24D18.8, T24D18_8  gene NDF1  function encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|18785996|IDA  go_component NAD(P)H dehydrogenase complex (plastoquinone)|GO:0010598|18785996|IDA  go_component NAD(P)H dehydrogenase complex (plastoquinone)|GO:0010598|18785996|IMP  go_process photosynthetic electron transport in photosystem I|GO:0009773|18785996|IMP  product NDF1 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1)  note NDH-DEPENDENT CYCLIC ELECTRON FLOW 1 (NDF1); INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 77 Blast hits to 77 proteins in 36 species: Archae - 0; Bacteria - 63; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15980.1p  transcript_id AT1G15980.1  protein_id AT1G15980.1p  transcript_id AT1G15980.1  
At1g15990	chr1:005493239	0.0	C/5493239-5493772,5492939-5493151,5492527-5492840,5492093-5492441,5491304-5492023	AT1G15990.1  CDS  gene_syn ATCNGC7, CNGC7, CYCLIC NUCLEOTIDE GATED CHANNEL 7, T24D18.9, T24D18_9  gene ATCNGC7  function member of Cyclic nucleotide gated channel family  go_component membrane|GO:0016020||IEA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ion channel activity|GO:0005216||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function cyclic nucleotide binding|GO:0030551||ISS  product ATCNGC7 (CYCLIC NUCLEOTIDE GATED CHANNEL 7); calmodulin binding / cyclic nucleotide binding / ion channel  note CYCLIC NUCLEOTIDE GATED CHANNEL 7 (ATCNGC7); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: response to cadmium ion; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, flower, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: ATCNGC8 (CYCLIC NUCLEOTIDE GATED CHANNEL 8); calmodulin binding / cyclic nucleotide binding / ion channel (TAIR:AT1G19780.1); Has 2801 Blast hits to 2688 proteins in 227 species: Archae - 0; Bacteria - 46; Metazoa - 1284; Fungi - 50; Plants - 649; Viruses - 0; Other Eukaryotes - 772 (source: NCBI BLink).  protein_id AT1G15990.1p  transcript_id AT1G15990.1  protein_id AT1G15990.1p  transcript_id AT1G15990.1  
At1g16000	chr1:005494576	0.0	W/5494576-5494744,5495058-5495149	AT1G16000.1  CDS  gene_syn T24D18.10, T24D18_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80890.1); Has 24 Blast hits to 23 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16000.1p  transcript_id AT1G16000.1  protein_id AT1G16000.1p  transcript_id AT1G16000.1  
At1g16010	chr1:005496492	0.0	C/5496492-5497082,5495920-5496378,5495785-5495832,5495462-5495692	AT1G16010.1  CDS  gene_syn T24D18.11, T24D18_11  go_component vacuole|GO:0005773|15539469|IDA  go_process metal ion transport|GO:0030001||IEA  go_function metal ion transmembrane transporter activity|GO:0046873||IEA  go_component membrane|GO:0016020||ISS  go_process metal ion transport|GO:0030001||ISS  go_function metal ion transmembrane transporter activity|GO:0046873||ISS  product magnesium transporter CorA-like family protein (MRS2-1)  note magnesium transporter CorA-like family protein (MRS2-1); FUNCTIONS IN: metal ion transmembrane transporter activity; INVOLVED IN: metal ion transport; LOCATED IN: vacuole, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mg2+ transporter protein, CorA-like (InterPro:IPR002523); BEST Arabidopsis thaliana protein match is: magnesium transporter CorA-like family protein (MGT1) (MRS2) (TAIR:AT1G80900.1); Has 465 Blast hits to 459 proteins in 113 species: Archae - 2; Bacteria - 12; Metazoa - 57; Fungi - 136; Plants - 199; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT1G16010.1p  transcript_id AT1G16010.1  protein_id AT1G16010.1p  transcript_id AT1G16010.1  
At1g16010	chr1:005496492	0.0	C/5496492-5497082,5495920-5496378,5495785-5495832,5495462-5495692	AT1G16010.2  CDS  gene_syn T24D18.11, T24D18_11  go_process metal ion transport|GO:0030001||IEA  go_function metal ion transmembrane transporter activity|GO:0046873||IEA  go_component membrane|GO:0016020||ISS  go_process metal ion transport|GO:0030001||ISS  go_function metal ion transmembrane transporter activity|GO:0046873||ISS  product magnesium transporter CorA-like family protein (MRS2-1)  note magnesium transporter CorA-like family protein (MRS2-1); FUNCTIONS IN: metal ion transmembrane transporter activity; INVOLVED IN: metal ion transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mg2+ transporter protein, CorA-like (InterPro:IPR002523); BEST Arabidopsis thaliana protein match is: magnesium transporter CorA-like family protein (MGT1) (MRS2) (TAIR:AT1G80900.1); Has 465 Blast hits to 459 proteins in 113 species: Archae - 2; Bacteria - 12; Metazoa - 57; Fungi - 136; Plants - 199; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT1G16010.2p  transcript_id AT1G16010.2  protein_id AT1G16010.2p  transcript_id AT1G16010.2  
At1g16020	chr1:005498633	0.0	W/5498633-5498808,5498986-5499079,5499192-5499375,5499475-5499513,5499641-5499750,5499828-5500367,5500449-5500604,5500685-5500902,5500988-5501018	AT1G16020.1  CDS  gene_syn T24D18.12, T24D18_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80910.1); Has 143 Blast hits to 143 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 2; Plants - 16; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G16020.1p  transcript_id AT1G16020.1  protein_id AT1G16020.1p  transcript_id AT1G16020.1  
At1g16020	chr1:005498633	0.0	W/5498633-5498808,5498986-5499079,5499192-5499375,5499641-5499750,5499828-5500367,5500449-5500604,5500685-5500902,5500988-5501018	AT1G16020.2  CDS  gene_syn T24D18.12, T24D18_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80910.1); Has 144 Blast hits to 144 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 119; Fungi - 2; Plants - 16; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G16020.2p  transcript_id AT1G16020.2  protein_id AT1G16020.2p  transcript_id AT1G16020.2  
At1g16025	chr1:005501505	0.0	W/5501505-5501648,5501762-5501959	AT1G16025.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16025.1p  transcript_id AT1G16025.1  protein_id AT1G16025.1p  transcript_id AT1G16025.1  
At1g16022	chr1:005501736	0.0	C/5501736-5501856,5501396-5501643	AT1G16022.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16022.1p  transcript_id AT1G16022.1  protein_id AT1G16022.1p  transcript_id AT1G16022.1  
At1g16030	chr1:005502386	0.0	C/5502386-5504326	AT1G16030.1  CDS  gene_syn Hsp70b, T24D18.14, T24D18_14, heat shock protein 70B  gene Hsp70b  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function ATP binding|GO:0005524||IEA  go_component cytosol|GO:0005829|11402207|TAS  go_process protein folding|GO:0006457|11402207|TAS  go_process response to heat|GO:0009408|11402207|IEP  product Hsp70b (heat shock protein 70B); ATP binding  note heat shock protein 70B (Hsp70b); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to heat; LOCATED IN: cytosol, cell wall, plasma membrane, chloroplast, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: HSP70 (heat shock protein 70); ATP binding (TAIR:AT3G12580.1); Has 24709 Blast hits to 24439 proteins in 3097 species: Archae - 107; Bacteria - 9686; Metazoa - 3084; Fungi - 1225; Plants - 724; Viruses - 242; Other Eukaryotes - 9641 (source: NCBI BLink).  protein_id AT1G16030.1p  transcript_id AT1G16030.1  protein_id AT1G16030.1p  transcript_id AT1G16030.1  
At1g16040	chr1:005504747	0.0	W/5504747-5504929,5505015-5505080,5505312-5505354,5505569-5505623,5505821-5505869,5505979-5506046,5506125-5506233,5506349-5506456	AT1G16040.1  CDS  gene_syn AT1G16050, T24D18.15, T24D18_15  go_component endoplasmic reticulum membrane|GO:0005789||IEA  go_component integral to membrane|GO:0016021||IEA  go_process GPI anchor biosynthetic process|GO:0006506||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: integral to membrane, endoplasmic reticulum membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GPI biosynthesis protein Pig-F (InterPro:IPR009580); Has 210 Blast hits to 210 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 96; Fungi - 80; Plants - 30; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G16040.1p  transcript_id AT1G16040.1  protein_id AT1G16040.1p  transcript_id AT1G16040.1  
At1g16060	chr1:005508563	0.0	W/5508563-5508753,5508834-5508916,5509147-5509155,5509594-5509682,5509908-5509981,5510095-5510145,5510247-5510323,5511146-5511609	AT1G16060.1  CDS  gene_syn T24D18.16, T24D18_16  go_component nucleus|GO:0005634|10948255|IC  go_process regulation of transcription, DNA-dependent|GO:0006355|8742706|TAS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process organ morphogenesis|GO:0009887|8742707|ISS  go_process organ morphogenesis|GO:0009887|9636071|ISS  go_function DNA binding|GO:0003677|9192694|TAS  go_function transcription factor activity|GO:0003700|10948255|ISS  go_function transcription factor activity|GO:0003700|10948255|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ovule development protein, putative  note ovule development protein, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: organ morphogenesis, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ovule development protein, putative (TAIR:AT1G79700.2); Has 4033 Blast hits to 3000 proteins in 193 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 3968; Viruses - 2; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT1G16060.1p  transcript_id AT1G16060.1  protein_id AT1G16060.1p  transcript_id AT1G16060.1  
At1g16060	chr1:005509083	0.0	W/5509083-5509155,5509594-5509682,5509908-5509981,5510095-5510145,5510247-5510323,5511146-5511609	AT1G16060.2  CDS  gene_syn T24D18.16, T24D18_16  go_component nucleus|GO:0005634|10948255|IC  go_process regulation of transcription, DNA-dependent|GO:0006355|8742706|TAS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process organ morphogenesis|GO:0009887|8742707|ISS  go_process organ morphogenesis|GO:0009887|9636071|ISS  go_function DNA binding|GO:0003677|9192694|TAS  go_function transcription factor activity|GO:0003700|10948255|ISS  go_function transcription factor activity|GO:0003700|10948255|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ovule development protein, putative  note ovule development protein, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: organ morphogenesis, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ovule development protein, putative (TAIR:AT1G79700.2); Has 3022 Blast hits to 2496 proteins in 181 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2970; Viruses - 2; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT1G16060.2p  transcript_id AT1G16060.2  protein_id AT1G16060.2p  transcript_id AT1G16060.2  
At1g16070	chr1:005513358	0.0	C/5513358-5513779,5513161-5513275,5512904-5513080,5512756-5512811,5512567-5512663,5512387-5512476,5512224-5512316,5512077-5512144,5511899-5511974	AT1G16070.1  CDS  gene_syn AtTLP8, T24D18.17, T24D18_17, TUBBY LIKE PROTEIN 8  gene AtTLP8  function Member of TLP family  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product AtTLP8 (TUBBY LIKE PROTEIN 8); transcription factor  note TUBBY LIKE PROTEIN 8 (AtTLP8); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: AtTLP6 (TUBBY LIKE PROTEIN 6); phosphoric diester hydrolase/ transcription factor (TAIR:AT1G47270.1); Has 603 Blast hits to 603 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 281; Fungi - 2; Plants - 268; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT1G16070.1p  transcript_id AT1G16070.1  protein_id AT1G16070.1p  transcript_id AT1G16070.1  
At1g16070	chr1:005513358	0.0	C/5513358-5513779,5513161-5513275,5512904-5513080,5512756-5512811,5512567-5512663,5512387-5512476,5512224-5512316,5512077-5512147,5511899-5511974	AT1G16070.2  CDS  gene_syn AtTLP8, T24D18.17, T24D18_17, TUBBY LIKE PROTEIN 8  gene AtTLP8  function Member of TLP family  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product AtTLP8 (TUBBY LIKE PROTEIN 8); transcription factor  note TUBBY LIKE PROTEIN 8 (AtTLP8); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: AtTLP6 (TUBBY LIKE PROTEIN 6); phosphoric diester hydrolase/ transcription factor (TAIR:AT1G47270.1); Has 604 Blast hits to 604 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 281; Fungi - 2; Plants - 270; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT1G16070.2p  transcript_id AT1G16070.2  protein_id AT1G16070.2p  transcript_id AT1G16070.2  
At1g16080	chr1:005514394	0.0	W/5514394-5514742,5514909-5515126,5515216-5515344,5515419-5515550,5515648-5515761	AT1G16080.1  CDS  gene_syn T24D18.18, T24D18_18  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component apoplast|GO:0048046|18538804|IDA  product unknown protein  note unknown protein; LOCATED IN: apoplast, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 37 Blast hits to 37 proteins in 18 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G16080.1p  transcript_id AT1G16080.1  protein_id AT1G16080.1p  transcript_id AT1G16080.1  
At1g16090	chr1:005516259	0.0	W/5516259-5516862,5516908-5517068,5517111-5517182,5517264-5517380	AT1G16090.1  CDS  gene_syn T24D18.19, T24D18_19, WAKL7, wall associated kinase-like 7  gene WAKL7  function WAK-like kinase  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  product WAKL7 (wall associated kinase-like 7); protein serine/threonine kinase  note wall associated kinase-like 7 (WAKL7); FUNCTIONS IN: protein serine/threonine kinase activity; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695); BEST Arabidopsis thaliana protein match is: RFO1 (RESISTANCE TO FUSARIUM OXYSPORUM 1); kinase (TAIR:AT1G79670.1); Has 469 Blast hits to 467 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 469; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16090.1p  transcript_id AT1G16090.1  protein_id AT1G16090.1p  transcript_id AT1G16090.1  
At1g16100	chr1:005518062	0.0	C/5518062-5518134	AT1G16100.1  tRNA  gene_syn 51681.TRNA-LYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Lys (anticodon: CTT)  transcript_id AT1G16100.1  
At1g16110	chr1:005518381	0.0	W/5518381-5519344,5519429-5519545,5519623-5520470	AT1G16110.1  CDS  gene_syn T24D18.30, T24D18_30, WAKL6, wall associated kinase-like 6  gene WAKL6  function WAK-like kinase  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function kinase activity|GO:0016301||ISS  product WAKL6 (wall associated kinase-like 6); kinase  note wall associated kinase-like 6 (WAKL6); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system, integral to membrane; CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: WAKL1 (wall associated kinase-like 1); kinase (TAIR:AT1G16120.1); Has 88895 Blast hits to 87223 proteins in 3072 species: Archae - 54; Bacteria - 7766; Metazoa - 39348; Fungi - 6989; Plants - 19147; Viruses - 468; Other Eukaryotes - 15123 (source: NCBI BLink).  protein_id AT1G16110.1p  transcript_id AT1G16110.1  protein_id AT1G16110.1p  transcript_id AT1G16110.1  
At1g16120	chr1:005522639	0.0	W/5522639-5523581,5523657-5523785,5523863-5524983	AT1G16120.1  CDS  gene_syn T24D18.20, T24D18_20, WAKL1, wall associated kinase-like 1  gene WAKL1  function wall-associated kinase like  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cell wall|GO:0005618||ISS  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function kinase activity|GO:0016301||ISS  product WAKL1 (wall associated kinase-like 1); kinase  note wall associated kinase-like 1 (WAKL1); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system, integral to membrane, cell wall; CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: WAKL5 (wall associated kinase-like 5); kinase (TAIR:AT1G16160.1); Has 89112 Blast hits to 87733 proteins in 3030 species: Archae - 56; Bacteria - 7820; Metazoa - 38884; Fungi - 7156; Plants - 19411; Viruses - 463; Other Eukaryotes - 15322 (source: NCBI BLink).  protein_id AT1G16120.1p  transcript_id AT1G16120.1  protein_id AT1G16120.1p  transcript_id AT1G16120.1  
At1g16130	chr1:005525634	0.0	W/5525634-5526543,5526627-5526749,5526834-5528047	AT1G16130.1  CDS  gene_syn T24D18.21, T24D18_21, WAKL2, wall associated kinase-like 2  gene WAKL2  function wall-associated kinase like  go_component integral to membrane|GO:0016021||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function kinase activity|GO:0016301||ISS  product WAKL2 (wall associated kinase-like 2); kinase  note wall associated kinase-like 2 (WAKL2); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: integral to membrane; EXPRESSED IN: stem, leaf whorl, cotyledon, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, LP.12 twelve leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695), Protein kinase, ATP binding site (InterPro:IPR017441), EGF-like calcium-binding, conserved site (InterPro:IPR018097), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: WAKL4 (WALL ASSOCIATED KINASE-LIKE 4); kinase (TAIR:AT1G16150.1); Has 88317 Blast hits to 87099 proteins in 3198 species: Archae - 58; Bacteria - 7879; Metazoa - 38546; Fungi - 6939; Plants - 19328; Viruses - 463; Other Eukaryotes - 15104 (source: NCBI BLink).  protein_id AT1G16130.1p  transcript_id AT1G16130.1  protein_id AT1G16130.1p  transcript_id AT1G16130.1  
At1g16140	chr1:005528965	0.0	W/5528965-5531255	AT1G16140.1  pseudogenic_transcript  pseudo  gene_syn T24D18.22, T24D18_22, WAKL3, wall associated kinase-like 3  gene WAKL3  function pseudogene similar to wall-associated kinase protein family  
At1g16150	chr1:005532415	0.0	W/5532415-5533348,5533434-5533610,5533649-5534877	AT1G16150.1  CDS  gene_syn T24D18.23, T24D18_23, WAKL4, WALL ASSOCIATED KINASE-LIKE 4  gene WAKL4  function Encodes a cell-wall associated kinase like protein of the receptor-like kinase (RLK) superfamily. Likely involved in Arabidopsis root mineral responses to Zn2+, Cu2+, K+, Na+ and Ni+.  go_component plasma membrane|GO:0005886|16286448|IDA  go_component plant-type cell wall|GO:0009505|16286448|IDA  go_component cell surface|GO:0009986|16286448|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process response to zinc ion|GO:0010043|16286448|IEP  go_process response to nickel ion|GO:0010045|16286448|IEP  go_process response to cadmium ion|GO:0046686|16286448|IEP  go_function kinase activity|GO:0016301||ISS  product WAKL4 (WALL ASSOCIATED KINASE-LIKE 4); kinase  note WALL ASSOCIATED KINASE-LIKE 4 (WAKL4); FUNCTIONS IN: kinase activity; INVOLVED IN: response to cadmium ion, response to zinc ion, protein amino acid phosphorylation, response to nickel ion; LOCATED IN: plasma membrane, cell surface, plant-type cell wall; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Wall-associated kinase (InterPro:IPR013695), Protein kinase, core (InterPro:IPR000719), EGF-like calcium-binding, conserved site (InterPro:IPR018097); BEST Arabidopsis thaliana protein match is: WAKL2 (wall associated kinase-like 2); kinase (TAIR:AT1G16130.1); Has 88040 Blast hits to 86717 proteins in 3132 species: Archae - 60; Bacteria - 7790; Metazoa - 38418; Fungi - 6983; Plants - 19257; Viruses - 440; Other Eukaryotes - 15092 (source: NCBI BLink).  protein_id AT1G16150.1p  transcript_id AT1G16150.1  protein_id AT1G16150.1p  transcript_id AT1G16150.1  
At1g16160	chr1:005535973	0.0	W/5535973-5536864,5536941-5537063,5537149-5538269	AT1G16160.1  CDS  gene_syn T24D18.24, T24D18_24, WAKL5, wall associated kinase-like 5  gene WAKL5  function WAK-like kinase  go_component chloroplast|GO:0009507||IEA  go_component integral to membrane|GO:0016021||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function kinase activity|GO:0016301||ISS  product WAKL5 (wall associated kinase-like 5); kinase  note wall associated kinase-like 5 (WAKL5); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: integral to membrane, chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695), EGF-like calcium-binding, conserved site (InterPro:IPR018097), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: WAKL1 (wall associated kinase-like 1); kinase (TAIR:AT1G16120.1); Has 88960 Blast hits to 86691 proteins in 2966 species: Archae - 50; Bacteria - 7644; Metazoa - 39437; Fungi - 7058; Plants - 19175; Viruses - 463; Other Eukaryotes - 15133 (source: NCBI BLink).  protein_id AT1G16160.1p  transcript_id AT1G16160.1  protein_id AT1G16160.1p  transcript_id AT1G16160.1  
At1g16170	chr1:005538874	0.0	C/5538874-5539152	AT1G16170.1  CDS  gene_syn T24D18.25, T24D18_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79660.1); Has 22 Blast hits to 22 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16170.1p  transcript_id AT1G16170.1  protein_id AT1G16170.1p  transcript_id AT1G16170.1  
At1g16180	chr1:005540905	0.0	W/5540905-5541088,5541163-5541402,5541484-5541595,5541675-5541849,5541948-5542188,5542384-5542670	AT1G16180.1  CDS  gene_syn T24D18.26, T24D18_26  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_function molecular_function|GO:0003674||ND  product TMS membrane family protein / tumour differentially expressed (TDE) family protein  note TMS membrane family protein / tumour differentially expressed (TDE) family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TMS membrane protein/tumour differentially expressed protein (InterPro:IPR005016); BEST Arabidopsis thaliana protein match is: TMS membrane family protein / tumour differentially expressed (TDE) family protein (TAIR:AT3G06170.1); Has 608 Blast hits to 602 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 391; Fungi - 87; Plants - 80; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT1G16180.1p  transcript_id AT1G16180.1  protein_id AT1G16180.1p  transcript_id AT1G16180.1  
At1g16190	chr1:005543267	0.0	W/5543267-5543332,5543606-5543767,5544064-5544102,5544192-5544230,5544317-5544390,5544484-5544661,5544739-5544861,5544950-5545015,5545219-5545266,5545344-5545453,5545599-5545683,5545776-5545892	AT1G16190.1  CDS  go_component nucleus|GO:0005634||IEA  go_process nucleotide-excision repair|GO:0006289||IEA  go_process protein modification process|GO:0006464||IEA  go_process proteasomal ubiquitin-dependent protein catabolic process|GO:0043161||IEA  go_function damaged DNA binding|GO:0003684||IEA  go_process base-excision repair|GO:0006284||ISS  go_function damaged DNA binding|GO:0003684||ISS  product DNA repair protein RAD23, putative  note DNA repair protein RAD23, putative; FUNCTIONS IN: damaged DNA binding; INVOLVED IN: protein modification process, proteasomal ubiquitin-dependent protein catabolic process, base-excision repair, nucleotide-excision repair; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), UV excision repair protein Rad23 (InterPro:IPR004806), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin (InterPro:IPR000626), UV excision repair protein Rad23, C-terminal (InterPro:IPR014761), XPC-binding domain (InterPro:IPR015360), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: RAD23; damaged DNA binding (TAIR:AT1G79650.2); Has 6642 Blast hits to 3540 proteins in 541 species: Archae - 2; Bacteria - 30; Metazoa - 2967; Fungi - 872; Plants - 1499; Viruses - 130; Other Eukaryotes - 1142 (source: NCBI BLink).  protein_id AT1G16190.1p  transcript_id AT1G16190.1  protein_id AT1G16190.1p  transcript_id AT1G16190.1  
At1g16210	chr1:005546890	0.0	C/5546890-5547447,5546497-5546616,5546352-5546378	AT1G16210.1  CDS  gene_syn F3O9.2, F3O9_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1014 (InterPro:IPR010422); Has 15664 Blast hits to 7512 proteins in 781 species: Archae - 22; Bacteria - 2461; Metazoa - 4728; Fungi - 1475; Plants - 417; Viruses - 118; Other Eukaryotes - 6443 (source: NCBI BLink).  protein_id AT1G16210.1p  transcript_id AT1G16210.1  protein_id AT1G16210.1p  transcript_id AT1G16210.1  
At1g16220	chr1:005548653	0.0	W/5548653-5548907,5549098-5549466,5549543-5549660,5549746-5549969,5550044-5550553	AT1G16220.1  CDS  gene_syn F3O9.3, F3O9_3  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C family protein / PP2C family protein  note protein phosphatase 2C family protein / PP2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C family protein / PP2C family protein (TAIR:AT1G79630.1); Has 3708 Blast hits to 3706 proteins in 223 species: Archae - 0; Bacteria - 8; Metazoa - 1129; Fungi - 436; Plants - 1259; Viruses - 5; Other Eukaryotes - 871 (source: NCBI BLink).  protein_id AT1G16220.1p  transcript_id AT1G16220.1  protein_id AT1G16220.1p  transcript_id AT1G16220.1  
At1g16225	chr1:005551886	0.0	C/5551886-5552028,5551591-5551784,5551400-5551500,5551261-5551305,5551041-5551157	AT1G16225.1  CDS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: syntaxin-related family protein (TAIR:AT1G16230.1); Has 85 Blast hits to 85 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 22; Plants - 56; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G16225.1p  transcript_id AT1G16225.1  protein_id AT1G16225.1p  transcript_id AT1G16225.1  
At1g16230	chr1:005554110	0.0	C/5554110-5554324,5553812-5554011,5553618-5553718,5553467-5553532	AT1G16230.1  CDS  gene_syn F3O9.34, F3O9_34  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product syntaxin-related family protein  note syntaxin-related family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: SYP51 (SYNTAXIN OF PLANTS 51); SNAP receptor (TAIR:AT1G16240.3); Has 116 Blast hits to 116 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 8; Fungi - 39; Plants - 60; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G16230.1p  transcript_id AT1G16230.1  protein_id AT1G16230.1p  transcript_id AT1G16230.1  
At1g16240	chr1:005556126	0.0	C/5556126-5556340,5555825-5556030,5555633-5555733,5555509-5555553,5555183-5555314	AT1G16240.1  CDS  gene_syn ATSYP51, F3O9.4, F3O9_4, SYNTAXIN OF PLANTS 51, SYP51  gene SYP51  function Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.  go_component vacuole|GO:0005773|15539469|IDA  go_component endosome membrane|GO:0010008|11115874|NAS  go_component endosome membrane|GO:0010008|11115874|TAS  go_process vesicle-mediated transport|GO:0016192|11115874|TAS  go_function SNAP receptor activity|GO:0005484|11115874|TAS  product SYP51 (SYNTAXIN OF PLANTS 51); SNAP receptor  note SYNTAXIN OF PLANTS 51 (SYP51); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endosome membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012); BEST Arabidopsis thaliana protein match is: SYP52 (SYNTAXIN OF PLANTS 52); SNAP receptor (TAIR:AT1G79590.2); Has 605 Blast hits to 605 proteins in 139 species: Archae - 0; Bacteria - 2; Metazoa - 233; Fungi - 155; Plants - 145; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT1G16240.1p  transcript_id AT1G16240.1  protein_id AT1G16240.1p  transcript_id AT1G16240.1  
At1g16240	chr1:005556126	0.0	C/5556126-5556340,5555825-5556030,5555633-5555733,5555509-5555553,5555183-5555314	AT1G16240.2  CDS  gene_syn ATSYP51, F3O9.4, F3O9_4, SYNTAXIN OF PLANTS 51, SYP51  gene SYP51  function Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.  go_component vacuole|GO:0005773|15539469|IDA  go_component endosome membrane|GO:0010008|11115874|NAS  go_component endosome membrane|GO:0010008|11115874|TAS  go_process vesicle-mediated transport|GO:0016192|11115874|TAS  go_function SNAP receptor activity|GO:0005484|11115874|TAS  product SYP51 (SYNTAXIN OF PLANTS 51); SNAP receptor  note SYNTAXIN OF PLANTS 51 (SYP51); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endosome membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012); BEST Arabidopsis thaliana protein match is: SYP52 (SYNTAXIN OF PLANTS 52); SNAP receptor (TAIR:AT1G79590.2); Has 605 Blast hits to 605 proteins in 139 species: Archae - 0; Bacteria - 2; Metazoa - 233; Fungi - 155; Plants - 145; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT1G16240.2p  transcript_id AT1G16240.2  protein_id AT1G16240.2p  transcript_id AT1G16240.2  
At1g16240	chr1:005556126	0.0	C/5556126-5556340,5555825-5556030,5555633-5555733,5555509-5555553,5555193-5555312	AT1G16240.3  CDS  gene_syn ATSYP51, F3O9.4, F3O9_4, SYNTAXIN OF PLANTS 51, SYP51  gene SYP51  function Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.  go_component endosome membrane|GO:0010008|11115874|NAS  go_component endosome membrane|GO:0010008|11115874|TAS  go_process vesicle-mediated transport|GO:0016192|11115874|TAS  go_function SNAP receptor activity|GO:0005484|11115874|TAS  product SYP51 (SYNTAXIN OF PLANTS 51); SNAP receptor  note SYNTAXIN OF PLANTS 51 (SYP51); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endosome membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012); BEST Arabidopsis thaliana protein match is: SYP52 (SYNTAXIN OF PLANTS 52); SNAP receptor (TAIR:AT1G79590.2); Has 390 Blast hits to 390 proteins in 110 species: Archae - 0; Bacteria - 2; Metazoa - 147; Fungi - 105; Plants - 96; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT1G16240.3p  transcript_id AT1G16240.3  protein_id AT1G16240.3p  transcript_id AT1G16240.3  
At1g16250	chr1:005557214	0.0	W/5557214-5557215,5557370-5557945,5558124-5558697	AT1G16250.1  CDS  gene_syn F3O9.5, F3O9_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT3G63220.2); Has 7013 Blast hits to 3858 proteins in 178 species: Archae - 4; Bacteria - 338; Metazoa - 5746; Fungi - 21; Plants - 596; Viruses - 32; Other Eukaryotes - 276 (source: NCBI BLink).  protein_id AT1G16250.1p  transcript_id AT1G16250.1  protein_id AT1G16250.1p  transcript_id AT1G16250.1  
At1g16260	chr1:005561169	0.0	C/5561169-5562018,5560984-5561088,5559708-5560915	AT1G16260.1  CDS  gene_syn F3O9.6, F3O9_6  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695), Protein kinase, ATP binding site (InterPro:IPR017441), EGF-like calcium-binding, conserved site (InterPro:IPR018097), Protein kinase, core (InterPro:IPR000719), EGF calcium-binding (InterPro:IPR013091), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: RFO1 (RESISTANCE TO FUSARIUM OXYSPORUM 1); kinase (TAIR:AT1G79670.1); Has 89333 Blast hits to 86843 proteins in 3155 species: Archae - 48; Bacteria - 7817; Metazoa - 40431; Fungi - 6739; Plants - 19030; Viruses - 457; Other Eukaryotes - 14811 (source: NCBI BLink).  protein_id AT1G16260.1p  transcript_id AT1G16260.1  protein_id AT1G16260.1p  transcript_id AT1G16260.1  
At1g16270	chr1:005563890	0.0	W/5563890-5566376,5566449-5566529,5566710-5566862,5566988-5567151,5567262-5567409,5567482-5567604,5567675-5567762,5567946-5568145	AT1G16270.1  CDS  gene_syn F3O9.7, F3O9_7  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, protein kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol, nucleus; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G79570.1); Has 87477 Blast hits to 86348 proteins in 3434 species: Archae - 51; Bacteria - 6991; Metazoa - 39639; Fungi - 6975; Plants - 18433; Viruses - 441; Other Eukaryotes - 14947 (source: NCBI BLink).  protein_id AT1G16270.1p  transcript_id AT1G16270.1  protein_id AT1G16270.1p  transcript_id AT1G16270.1  
At1g16280	chr1:005569873	0.0	C/5569873-5570487,5569464-5569786,5569180-5569383,5569014-5569095,5568815-5568913,5568482-5568634	AT1G16280.1  CDS  gene_syn F3O9.8, F3O9_8  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_component cellular_component|GO:0005575||ND  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD/DEAH box helicase, putative  note DEAD/DEAH box helicase, putative; FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (RH10) (TAIR:AT5G60990.1); Has 28907 Blast hits to 28173 proteins in 1763 species: Archae - 588; Bacteria - 11565; Metazoa - 5232; Fungi - 3482; Plants - 1415; Viruses - 33; Other Eukaryotes - 6592 (source: NCBI BLink).  protein_id AT1G16280.1p  transcript_id AT1G16280.1  protein_id AT1G16280.1p  transcript_id AT1G16280.1  
At1g16290	chr1:005573362	0.0	C/5573362-5573538,5573200-5573250,5572951-5573081,5572741-5572857,5572510-5572629,5572248-5572309,5571873-5572042,5571705-5571758,5571483-5571592,5571276-5571389,5571061-5571186,5570938-5570965	AT1G16290.1  CDS  gene_syn F3O9.9, F3O9_9  go_component vacuole|GO:0005773|14760709|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Lytic transglycosylase-like, catalytic (InterPro:IPR008258); Has 119 Blast hits to 113 proteins in 24 species: Archae - 0; Bacteria - 39; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT1G16290.1p  transcript_id AT1G16290.1  protein_id AT1G16290.1p  transcript_id AT1G16290.1  
At1g16300	chr1:005574433	0.0	W/5574433-5574525,5574837-5574907,5575013-5575080,5575165-5575203,5575336-5575436,5575661-5575773,5575911-5576010,5576157-5576303,5576406-5576466,5576574-5576671,5576753-5576895,5577005-5577088,5577169-5577258,5577352-5577406	AT1G16300.1  CDS  gene_syn F3O9.10, F3O9_10, GAPCP-2  gene GAPCP-2  go_process glucose metabolic process|GO:0006006||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity|GO:0004365||IEA  go_function binding|GO:0005488||IEA  go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_component plastid|GO:0009536|15533878|ISS  go_process glycolysis|GO:0006096||ISS  go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943||ISS  product GAPCP-2; NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase  note GAPCP-2; FUNCTIONS IN: NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, binding, catalytic activity, glyceraldehyde-3-phosphate dehydrogenase activity; INVOLVED IN: glycolysis, glucose metabolic process, metabolic process; LOCATED IN: plastid; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase (InterPro:IPR000173), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1); NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase (TAIR:AT1G79530.1); Has 17600 Blast hits to 17591 proteins in 4038 species: Archae - 29; Bacteria - 6618; Metazoa - 1465; Fungi - 1940; Plants - 2550; Viruses - 0; Other Eukaryotes - 4998 (source: NCBI BLink).  protein_id AT1G16300.1p  transcript_id AT1G16300.1  protein_id AT1G16300.1p  transcript_id AT1G16300.1  
At1g16310	chr1:005578435	0.0	W/5578435-5578708,5579235-5579347,5579434-5579679,5579769-5579849,5579925-5580155,5580244-5580585	AT1G16310.1  CDS  gene_syn F3O9.11, F3O9_11  go_component membrane|GO:0016020||IEA  go_process cation transport|GO:0006812||IEA  go_function cation transmembrane transporter activity|GO:0008324||IEA  go_component membrane|GO:0016020||ISS  go_process cation transport|GO:0006812||ISS  go_function cation transmembrane transporter activity|GO:0008324||ISS  product cation efflux family protein  note cation efflux family protein; FUNCTIONS IN: cation transmembrane transporter activity; INVOLVED IN: cation transport; LOCATED IN: membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: cation efflux family protein (TAIR:AT1G79520.1); Has 2870 Blast hits to 2866 proteins in 995 species: Archae - 100; Bacteria - 2206; Metazoa - 40; Fungi - 192; Plants - 103; Viruses - 0; Other Eukaryotes - 229 (source: NCBI BLink).  protein_id AT1G16310.1p  transcript_id AT1G16310.1  protein_id AT1G16310.1p  transcript_id AT1G16310.1  
At1g16320	chr1:005580951	0.0	W/5580951-5581282,5581443-5581932	AT1G16320.1  CDS  gene_syn F3O9.12, F3O9_12  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2358 (InterPro:IPR018790); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79510.2); Has 187 Blast hits to 187 proteins in 61 species: Archae - 0; Bacteria - 61; Metazoa - 72; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G16320.1p  transcript_id AT1G16320.1  protein_id AT1G16320.1p  transcript_id AT1G16320.1  
At1g16330	chr1:005584395	0.0	C/5584395-5584457,5583898-5584176,5583697-5583819,5583479-5583568,5583228-5583389,5583089-5583148,5582886-5582984,5582614-5582792,5582387-5582522	AT1G16330.1  CDS  gene_syn CYCB3;1, F3O9.13, F3O9_13, cyclin b3;1  gene CYCB3;1  function core cell cycle genes  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase activity|GO:0004693||ISS  product CYCB3;1 (cyclin b3;1); cyclin-dependent protein kinase  note cyclin b3;1 (CYCB3;1); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCB2;3 (Cyclin B2;3); cyclin-dependent protein kinase regulator (TAIR:AT1G20610.1); Has 3416 Blast hits to 3413 proteins in 296 species: Archae - 0; Bacteria - 0; Metazoa - 1815; Fungi - 379; Plants - 687; Viruses - 35; Other Eukaryotes - 500 (source: NCBI BLink).  protein_id AT1G16330.1p  transcript_id AT1G16330.1  protein_id AT1G16330.1p  transcript_id AT1G16330.1  
At1g16340	chr1:005590431	0.0	C/5590431-5590469,5590241-5590338,5589929-5590025,5589565-5589630,5589423-5589482,5589229-5589303,5589064-5589148,5588882-5588940,5588723-5588767,5588522-5588620,5588386-5588433,5588259-5588306,5588123-5588179	AT1G16340.1  CDS  gene_syn ATKDSA2, ATKSDA, F3O9.14, F3O9_14  gene ATKDSA2  function Encodes a protein with putative 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase activity. This gene share a very high sequence homology with its homologue AtkdsA1 (AT1G79500).  go_component cytoplasm|GO:0005737||IEA  go_component endomembrane system|GO:0012505||IEA  go_component cytoplasm|GO:0005737||ISS  go_process metabolic process|GO:0008152||ISS  go_process rhamnogalacturonan II biosynthetic process|GO:0010306|12754267|TAS  go_function 3-deoxy-8-phosphooctulonate synthase activity|GO:0008676|12754267|ISS  go_function 3-deoxy-8-phosphooctulonate synthase activity|GO:0008676||ISS  product ATKDSA2; 3-deoxy-8-phosphooctulonate synthase  note ATKDSA2; FUNCTIONS IN: 3-deoxy-8-phosphooctulonate synthase activity; INVOLVED IN: rhamnogalacturonan II biosynthetic process, metabolic process; LOCATED IN: endomembrane system, cytoplasm; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase I/KDSA (InterPro:IPR006218), Aldolase-type TIM barrel (InterPro:IPR013785), 3-deoxy-8-phosphooctulonate synthase (InterPro:IPR006269); BEST Arabidopsis thaliana protein match is: 2-dehydro-3-deoxyphosphooctonate aldolase / phospho-2-dehydro-3-deoxyoctonate aldolase / 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA) (TAIR:AT1G79500.4); Has 5586 Blast hits to 5586 proteins in 1105 species: Archae - 46; Bacteria - 2695; Metazoa - 4; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 2802 (source: NCBI BLink).  protein_id AT1G16340.1p  transcript_id AT1G16340.1  protein_id AT1G16340.1p  transcript_id AT1G16340.1  
At1g16340	chr1:005590431	0.0	C/5590431-5590469,5590241-5590338,5589929-5590025,5589565-5589630,5589423-5589482,5589229-5589303,5589064-5589148,5588882-5588940,5588723-5588767,5588522-5588620,5588386-5588433,5588259-5588306,5588123-5588179	AT1G16340.2  CDS  gene_syn ATKDSA2, ATKSDA, F3O9.14, F3O9_14  gene ATKDSA2  function Encodes a protein with putative 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase activity. This gene share a very high sequence homology with its homologue AtkdsA1 (AT1G79500).  go_component cytoplasm|GO:0005737||IEA  go_component endomembrane system|GO:0012505||IEA  go_component cytoplasm|GO:0005737||ISS  go_process metabolic process|GO:0008152||ISS  go_process rhamnogalacturonan II biosynthetic process|GO:0010306|12754267|TAS  go_function 3-deoxy-8-phosphooctulonate synthase activity|GO:0008676|12754267|ISS  go_function 3-deoxy-8-phosphooctulonate synthase activity|GO:0008676||ISS  product ATKDSA2; 3-deoxy-8-phosphooctulonate synthase  note ATKDSA2; FUNCTIONS IN: 3-deoxy-8-phosphooctulonate synthase activity; INVOLVED IN: rhamnogalacturonan II biosynthetic process, metabolic process; LOCATED IN: endomembrane system, cytoplasm; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase I/KDSA (InterPro:IPR006218), Aldolase-type TIM barrel (InterPro:IPR013785), 3-deoxy-8-phosphooctulonate synthase (InterPro:IPR006269); BEST Arabidopsis thaliana protein match is: 2-dehydro-3-deoxyphosphooctonate aldolase / phospho-2-dehydro-3-deoxyoctonate aldolase / 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA) (TAIR:AT1G79500.4); Has 5586 Blast hits to 5586 proteins in 1105 species: Archae - 46; Bacteria - 2695; Metazoa - 4; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 2802 (source: NCBI BLink).  protein_id AT1G16340.2p  transcript_id AT1G16340.2  protein_id AT1G16340.2p  transcript_id AT1G16340.2  
At1g16340	chr1:005590431	0.0	C/5590431-5590469,5590241-5590338,5589929-5590025,5589565-5589630,5589423-5589482,5589229-5589303,5589064-5589148,5588882-5588940,5588723-5588767,5588522-5588620,5588386-5588433,5588259-5588306,5588123-5588179	AT1G16340.3  CDS  gene_syn ATKDSA2, ATKSDA, F3O9.14, F3O9_14  gene ATKDSA2  function Encodes a protein with putative 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase activity. This gene share a very high sequence homology with its homologue AtkdsA1 (AT1G79500).  go_component cytoplasm|GO:0005737||IEA  go_component endomembrane system|GO:0012505||IEA  go_component cytoplasm|GO:0005737||ISS  go_process metabolic process|GO:0008152||ISS  go_process rhamnogalacturonan II biosynthetic process|GO:0010306|12754267|TAS  go_function 3-deoxy-8-phosphooctulonate synthase activity|GO:0008676|12754267|ISS  go_function 3-deoxy-8-phosphooctulonate synthase activity|GO:0008676||ISS  product ATKDSA2; 3-deoxy-8-phosphooctulonate synthase  note ATKDSA2; FUNCTIONS IN: 3-deoxy-8-phosphooctulonate synthase activity; INVOLVED IN: rhamnogalacturonan II biosynthetic process, metabolic process; LOCATED IN: endomembrane system, cytoplasm; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase I/KDSA (InterPro:IPR006218), Aldolase-type TIM barrel (InterPro:IPR013785), 3-deoxy-8-phosphooctulonate synthase (InterPro:IPR006269); BEST Arabidopsis thaliana protein match is: 2-dehydro-3-deoxyphosphooctonate aldolase / phospho-2-dehydro-3-deoxyoctonate aldolase / 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA) (TAIR:AT1G79500.4); Has 5586 Blast hits to 5586 proteins in 1105 species: Archae - 46; Bacteria - 2695; Metazoa - 4; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 2802 (source: NCBI BLink).  protein_id AT1G16340.3p  transcript_id AT1G16340.3  protein_id AT1G16340.3p  transcript_id AT1G16340.3  
At1g16350	chr1:005590951	0.0	W/5590951-5591353,5591469-5592064,5592171-5592350,5592444-5592701,5592801-5592872	AT1G16350.1  CDS  gene_syn F3O9.15, F3O9_15  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function IMP dehydrogenase activity|GO:0003938||IEA  go_component cellular_component|GO:0005575||ND  go_process GMP biosynthetic process|GO:0006177||ISS  go_function IMP dehydrogenase activity|GO:0003938||ISS  product inosine-5 -monophosphate dehydrogenase, putative  note inosine-5 -monophosphate dehydrogenase, putative; FUNCTIONS IN: IMP dehydrogenase activity, catalytic activity; INVOLVED IN: GMP biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IMP dehydrogenase (InterPro:IPR005990), IMP dehydrogenase related (InterPro:IPR018529), Aldolase-type TIM barrel (InterPro:IPR013785), IMP dehydrogenase/GMP reductase (InterPro:IPR001093), IMP dehydrogenase / GMP reductase, conserved site (InterPro:IPR015875); BEST Arabidopsis thaliana protein match is: inosine-5 -monophosphate dehydrogenase (TAIR:AT1G79470.1); Has 9519 Blast hits to 8908 proteins in 1485 species: Archae - 105; Bacteria - 3617; Metazoa - 423; Fungi - 118; Plants - 44; Viruses - 2; Other Eukaryotes - 5210 (source: NCBI BLink).  protein_id AT1G16350.1p  transcript_id AT1G16350.1  protein_id AT1G16350.1p  transcript_id AT1G16350.1  
At1g16360	chr1:005595075	0.0	C/5595075-5595179,5594902-5594976,5594697-5594810,5594524-5594594,5594097-5594394,5593672-5593961,5593493-5593550	AT1G16360.1  CDS  gene_syn F3O9.16, F3O9_16  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  product LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein  note LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF284, transmembrane eukaryotic (InterPro:IPR005045); BEST Arabidopsis thaliana protein match is: ALIS5 (ALA-Interacting Subunit 5) (TAIR:AT1G79450.1); Has 647 Blast hits to 647 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 217; Fungi - 139; Plants - 105; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).  protein_id AT1G16360.1p  transcript_id AT1G16360.1  protein_id AT1G16360.1p  transcript_id AT1G16360.1  
At1g16370	chr1:005596762	0.0	W/5596762-5598327	AT1G16370.1  CDS  gene_syn ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 6, ATOCT6, F3O9.17, F3O9_17, OCT6, ORGANIC CATION/CARNITINE TRANSPORTER 6  gene OCT6  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product OCT6 (ORGANIC CATION/CARNITINE TRANSPORTER 6); carbohydrate transmembrane transporter/ sugar:hydrogen symporter  note ORGANIC CATION/CARNITINE TRANSPORTER 6 (OCT6); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; LOCATED IN: membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: AtOCT5 (Arabidopsis thaliana ORGANIC CATION/CARNITINE TRANSPORTER5); carbohydrate transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT1G79410.1); Has 10264 Blast hits to 10187 proteins in 902 species: Archae - 161; Bacteria - 3952; Metazoa - 3380; Fungi - 1633; Plants - 642; Viruses - 0; Other Eukaryotes - 496 (source: NCBI BLink).  protein_id AT1G16370.1p  transcript_id AT1G16370.1  protein_id AT1G16370.1p  transcript_id AT1G16370.1  
At1g16380	chr1:005601209	0.0	C/5601209-5601367,5599903-5600880,5598873-5599813,5598453-5598732	AT1G16380.1  CDS  gene_syn ATCHX1, CATION EXCHANGER 1, CHX1, F3O9.18, F3O9_18  gene ATCHX1  function member of Putative Na+/H+ antiporter family  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|IC  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product ATCHX1; monovalent cation:proton antiporter/ sodium:hydrogen antiporter  note ATCHX1; FUNCTIONS IN: monovalent cation:proton antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: ATCHX2 (CATION/H+ EXCHANGER 2); monovalent cation:proton antiporter/ sodium:hydrogen antiporter (TAIR:AT1G79400.1); Has 1526 Blast hits to 1505 proteins in 483 species: Archae - 122; Bacteria - 998; Metazoa - 0; Fungi - 88; Plants - 225; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT1G16380.1p  transcript_id AT1G16380.1  protein_id AT1G16380.1p  transcript_id AT1G16380.1  
At1g16390	chr1:005602921	0.0	W/5602921-5604477	AT1G16390.1  CDS  gene_syn ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 3, ATOCT3, F3O9.19, F3O9_19  gene ATOCT3  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product ATOCT3 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 3); carbohydrate transmembrane transporter/ sugar:hydrogen symporter  note ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 3 (ATOCT3); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ATOCT2 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 2); carbohydrate transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT1G79360.1); Has 14668 Blast hits to 14637 proteins in 1162 species: Archae - 220; Bacteria - 6088; Metazoa - 3985; Fungi - 2765; Plants - 929; Viruses - 0; Other Eukaryotes - 681 (source: NCBI BLink).  protein_id AT1G16390.1p  transcript_id AT1G16390.1  protein_id AT1G16390.1p  transcript_id AT1G16390.1  
At1g16400	chr1:005605231	0.0	W/5605231-5606199,5606377-5606650,5606911-5607281	AT1G16400.1  CDS  gene_syn CYP79F2, CYTOCHROME P450 79F2, F3O9.20, F3O9_20  gene CYP79F2  function Encodes cytochrome P450 CYP79F2.  go_component endoplasmic reticulum|GO:0005783|11226190|IDA  go_process glucosinolate biosynthetic process|GO:0019761|12609033|IMP  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen|GO:0016709|12609033|IDA  go_function oxygen binding|GO:0019825||ISS  product CYP79F2; oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen / oxygen binding  note CYP79F2; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, oxygen binding; INVOLVED IN: glucosinolate biosynthetic process; LOCATED IN: endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP79F1 (CYTOCHROME P450 79F1); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen (TAIR:AT1G16410.1); Has 20024 Blast hits to 19952 proteins in 1122 species: Archae - 21; Bacteria - 1357; Metazoa - 9382; Fungi - 3447; Plants - 5194; Viruses - 3; Other Eukaryotes - 620 (source: NCBI BLink).  protein_id AT1G16400.1p  transcript_id AT1G16400.1  protein_id AT1G16400.1p  transcript_id AT1G16400.1  
At1g16410	chr1:005608862	0.0	W/5608862-5609833,5609945-5610218,5610748-5611118	AT1G16410.1  CDS  gene_syn BUS1, BUSHY 1, CYP79F1, CYTOCHROME P450 79F1, F3O9.21, F3O9_21, SPS1, SUPERSHOOT 1  gene CYP79F1  function member of CYP79F  go_component endoplasmic reticulum|GO:0005783|11226190|IDA  go_process glucosinolate biosynthetic process|GO:0019761|12609033|IMP  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen|GO:0016709|12609033|IDA  product CYP79F1 (CYTOCHROME P450 79F1); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen  note CYTOCHROME P450 79F1 (CYP79F1); FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen; INVOLVED IN: glucosinolate biosynthetic process; LOCATED IN: endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP79F2; oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen / oxygen binding (TAIR:AT1G16400.1); Has 19742 Blast hits to 19647 proteins in 1104 species: Archae - 19; Bacteria - 1285; Metazoa - 9445; Fungi - 3192; Plants - 5198; Viruses - 0; Other Eukaryotes - 603 (source: NCBI BLink).  protein_id AT1G16410.1p  transcript_id AT1G16410.1  protein_id AT1G16410.1p  transcript_id AT1G16410.1  
At1g16410	chr1:005608862	0.0	W/5608862-5609833,5609945-5610244	AT1G16410.2  CDS  gene_syn BUS1, BUSHY 1, CYP79F1, CYTOCHROME P450 79F1, F3O9.21, F3O9_21, SPS1, SUPERSHOOT 1  gene CYP79F1  function member of CYP79F  go_component endoplasmic reticulum|GO:0005783|11226190|IDA  go_process glucosinolate biosynthetic process|GO:0019761|12609033|IMP  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen|GO:0016709|12609033|IDA  product CYP79F1 (CYTOCHROME P450 79F1); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen  note CYTOCHROME P450 79F1 (CYP79F1); FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen; INVOLVED IN: glucosinolate biosynthetic process; LOCATED IN: endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP79F2; oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen / oxygen binding (TAIR:AT1G16400.1); Has 11811 Blast hits to 11756 proteins in 831 species: Archae - 6; Bacteria - 574; Metazoa - 5789; Fungi - 994; Plants - 4179; Viruses - 0; Other Eukaryotes - 269 (source: NCBI BLink).  protein_id AT1G16410.2p  transcript_id AT1G16410.2  protein_id AT1G16410.2p  transcript_id AT1G16410.2  
At1g16420	chr1:005613481	0.0	C/5613481-5613829,5612304-5613100	AT1G16420.1  CDS  gene_syn ARABIDOPSIS THALIANA METACASPASE 8, ATMC8, F3O9.22, F3O9_22, MC8, METACASPASE 8  gene MC8  function Encodes a metacaspase (cysteine-type endopeptidase) that is involved in promoting programmed cell death in response to hydrogen peroxide (H2O2), UV light, and methyl viologen (MV). Transcript levels rise in response to UV-C, H2O2, and MV. In vitro assays demonstrate that this enzyme has a preference for cleaving after an arginine residue, and it has a pH optimum of 8.0.  go_component cellular_component|GO:0005575||ND  go_process response to oxidative stress|GO:0006979|17998208|IEP  go_process response to oxidative stress|GO:0006979|17998208|IMP  go_process response to UV-C|GO:0010225|17998208|IEP  go_process hydrogen peroxide-mediated programmed cell death|GO:0010421|17998208|IMP  go_process programmed cell death|GO:0012501|17998208|IMP  go_process response to hydrogen peroxide|GO:0042542|17998208|IMP  go_function cysteine-type endopeptidase activity|GO:0004197|17998208|IDA  product MC8 (METACASPASE 8); cysteine-type endopeptidase  note METACASPASE 8 (MC8); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: response to oxidative stress, response to UV-C, response to hydrogen peroxide, hydrogen peroxide-mediated programmed cell death, programmed cell death; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, leaf whorl, leaf apex, cotyledon, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.10 ten leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: AtMC7 (metacaspase 7); cysteine-type endopeptidase (TAIR:AT1G79310.1); Has 733 Blast hits to 730 proteins in 186 species: Archae - 2; Bacteria - 194; Metazoa - 0; Fungi - 182; Plants - 177; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink).  protein_id AT1G16420.1p  transcript_id AT1G16420.1  protein_id AT1G16420.1p  transcript_id AT1G16420.1  
At1g16430	chr1:005614632	0.0	W/5614632-5614787,5614877-5614942,5615167-5615397	AT1G16430.1  CDS  gene_syn F3O9.23, F3O9_23  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product surfeit locus protein 5 family protein / SURF5 family protein  note surfeit locus protein 5 family protein / SURF5 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Surfeit locus 5 (InterPro:IPR009332); BEST Arabidopsis thaliana protein match is: surfeit locus protein 5 family protein / SURF5 family protein (TAIR:AT1G07950.1); Has 176 Blast hits to 176 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 138; Fungi - 4; Plants - 30; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G16430.1p  transcript_id AT1G16430.1  protein_id AT1G16430.1p  transcript_id AT1G16430.1  
At1g16440	chr1:005615841	0.0	W/5615841-5615879,5616100-5616713,5616786-5617632	AT1G16440.1  CDS  gene_syn F3O9.24, F3O9_24  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product kinase  note kinase; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: AGC1.7 (AGC KINASE 1.7); kinase (TAIR:AT1G79250.1); Has 73611 Blast hits to 64666 proteins in 1671 species: Archae - 17; Bacteria - 6733; Metazoa - 32551; Fungi - 7829; Plants - 10391; Viruses - 350; Other Eukaryotes - 15740 (source: NCBI BLink).  protein_id AT1G16440.1p  transcript_id AT1G16440.1  protein_id AT1G16440.1p  transcript_id AT1G16440.1  
At1g16445	chr1:005617811	0.0	W/5617811-5618012,5618143-5618206,5618436-5618634,5618722-5618795,5618909-5619064,5619174-5619303	AT1G16445.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  product methylase-related  note methylase-related; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Putative rRNA methylase (InterPro:IPR010719); Has 531 Blast hits to 531 proteins in 250 species: Archae - 2; Bacteria - 482; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G16445.1p  transcript_id AT1G16445.1  protein_id AT1G16445.1p  transcript_id AT1G16445.1  
At1g16450	chr1:005619471	0.0	C/5619471-5619543	AT1G16450.1  tRNA  gene_syn 51361.TRNA-ARG-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: CCG)  transcript_id AT1G16450.1  
At1g16460	chr1:005621871	0.0	C/5621871-5621981,5621693-5621752,5621492-5621554,5621072-5621196,5620811-5620973,5620637-5620696,5620507-5620565,5620312-5620393,5620167-5620230,5620038-5620105,5619848-5619949	AT1G16460.1  CDS  gene_syn ARABIDOPSIS THALIANA MERCAPTOPYRUVATE SULFURTRANSFERASE 2, ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2, ATMST2, ATRDH2, F3O9.26, F3O9_26, MERCAPTOPYRUVATE SULFURTRANSFERASE, MERCAPTOPYRUVATE SULFURTRANSFERASE 2, MST2  gene ATRDH2  function encodes a cytoplasmic thiosulfate:cyanide sulfurtransferase, activity of which increased the rhodanese activity of transgenic yeast. Can also act as a mercaptopyruvate sulfurtransferase.  go_process sulfate transport|GO:0008272||IEA  go_component cytoplasm|GO:0005737|10951223|IDA  go_component cytosol|GO:0005829|10734224|IEP  go_process aging|GO:0007568||ISS  go_function thiosulfate sulfurtransferase activity|GO:0004792|10734224|ISS  go_function thiosulfate sulfurtransferase activity|GO:0004792||ISS  go_function 3-mercaptopyruvate sulfurtransferase activity|GO:0016784|10951223|IDA  product ATRDH2 (ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2); 3-mercaptopyruvate sulfurtransferase/ thiosulfate sulfurtransferase  note ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2 (ATRDH2); FUNCTIONS IN: 3-mercaptopyruvate sulfurtransferase activity, thiosulfate sulfurtransferase activity; INVOLVED IN: sulfate transport, aging; LOCATED IN: cytosol, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Thiosulphate sulfurtransferase, conserved site (InterPro:IPR001307); BEST Arabidopsis thaliana protein match is: MST1 (MERCAPTOPYRUVATE SULFURTRANSFERASE 1); 3-mercaptopyruvate sulfurtransferase/ sulfurtransferase/ thiosulfate sulfurtransferase (TAIR:AT1G79230.3); Has 4332 Blast hits to 4315 proteins in 848 species: Archae - 86; Bacteria - 1962; Metazoa - 224; Fungi - 102; Plants - 60; Viruses - 0; Other Eukaryotes - 1898 (source: NCBI BLink).  protein_id AT1G16460.1p  transcript_id AT1G16460.1  protein_id AT1G16460.1p  transcript_id AT1G16460.1  
At1g16460	chr1:005621871	0.0	C/5621871-5621981,5621693-5621752,5621492-5621554,5621072-5621196,5620811-5620973,5620637-5620696,5620507-5620565,5620312-5620393,5620167-5620230,5620038-5620105,5619848-5619949	AT1G16460.3  CDS  gene_syn ARABIDOPSIS THALIANA MERCAPTOPYRUVATE SULFURTRANSFERASE 2, ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2, ATMST2, ATRDH2, F3O9.26, F3O9_26, MERCAPTOPYRUVATE SULFURTRANSFERASE, MERCAPTOPYRUVATE SULFURTRANSFERASE 2, MST2  gene ATRDH2  function encodes a cytoplasmic thiosulfate:cyanide sulfurtransferase, activity of which increased the rhodanese activity of transgenic yeast. Can also act as a mercaptopyruvate sulfurtransferase.  go_process sulfate transport|GO:0008272||IEA  go_component cytoplasm|GO:0005737|10951223|IDA  go_component cytosol|GO:0005829|10734224|IEP  go_process aging|GO:0007568||ISS  go_function thiosulfate sulfurtransferase activity|GO:0004792|10734224|ISS  go_function thiosulfate sulfurtransferase activity|GO:0004792||ISS  go_function 3-mercaptopyruvate sulfurtransferase activity|GO:0016784|10951223|IDA  product ATRDH2 (ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2); 3-mercaptopyruvate sulfurtransferase/ thiosulfate sulfurtransferase  note ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2 (ATRDH2); FUNCTIONS IN: 3-mercaptopyruvate sulfurtransferase activity, thiosulfate sulfurtransferase activity; INVOLVED IN: sulfate transport, aging; LOCATED IN: cytosol, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Thiosulphate sulfurtransferase, conserved site (InterPro:IPR001307); BEST Arabidopsis thaliana protein match is: MST1 (MERCAPTOPYRUVATE SULFURTRANSFERASE 1); 3-mercaptopyruvate sulfurtransferase/ sulfurtransferase/ thiosulfate sulfurtransferase (TAIR:AT1G79230.3); Has 4332 Blast hits to 4315 proteins in 848 species: Archae - 86; Bacteria - 1962; Metazoa - 224; Fungi - 102; Plants - 60; Viruses - 0; Other Eukaryotes - 1898 (source: NCBI BLink).  protein_id AT1G16460.3p  transcript_id AT1G16460.3  protein_id AT1G16460.3p  transcript_id AT1G16460.3  
At1g16460	chr1:005622479	0.0	C/5622479-5622481,5621871-5622050,5621693-5621752,5621492-5621554,5621072-5621196,5620811-5620973,5620637-5620696,5620507-5620565,5620312-5620393,5620167-5620230,5620038-5620105,5619848-5619949	AT1G16460.2  CDS  gene_syn ARABIDOPSIS THALIANA MERCAPTOPYRUVATE SULFURTRANSFERASE 2, ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2, ATMST2, ATRDH2, F3O9.26, F3O9_26, MERCAPTOPYRUVATE SULFURTRANSFERASE, MERCAPTOPYRUVATE SULFURTRANSFERASE 2, MST2  gene ATRDH2  function encodes a cytoplasmic thiosulfate:cyanide sulfurtransferase, activity of which increased the rhodanese activity of transgenic yeast. Can also act as a mercaptopyruvate sulfurtransferase.  go_process sulfate transport|GO:0008272||IEA  go_component cytoplasm|GO:0005737|10951223|IDA  go_component cytosol|GO:0005829|10734224|IEP  go_process aging|GO:0007568||ISS  go_function thiosulfate sulfurtransferase activity|GO:0004792|10734224|ISS  go_function thiosulfate sulfurtransferase activity|GO:0004792||ISS  go_function 3-mercaptopyruvate sulfurtransferase activity|GO:0016784|10951223|IDA  product ATRDH2 (ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2); 3-mercaptopyruvate sulfurtransferase/ thiosulfate sulfurtransferase  note ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2 (ATRDH2); FUNCTIONS IN: 3-mercaptopyruvate sulfurtransferase activity, thiosulfate sulfurtransferase activity; INVOLVED IN: sulfate transport, aging; LOCATED IN: cytosol, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Thiosulphate sulfurtransferase, conserved site (InterPro:IPR001307); BEST Arabidopsis thaliana protein match is: MST1 (MERCAPTOPYRUVATE SULFURTRANSFERASE 1); 3-mercaptopyruvate sulfurtransferase/ sulfurtransferase/ thiosulfate sulfurtransferase (TAIR:AT1G79230.1); Has 4332 Blast hits to 4315 proteins in 848 species: Archae - 86; Bacteria - 1962; Metazoa - 224; Fungi - 102; Plants - 60; Viruses - 0; Other Eukaryotes - 1898 (source: NCBI BLink).  protein_id AT1G16460.2p  transcript_id AT1G16460.2  protein_id AT1G16460.2p  transcript_id AT1G16460.2  
At1g16470	chr1:005623122	0.0	W/5623122-5623162,5623241-5623317,5623401-5623465,5623589-5623635,5623728-5623803,5623891-5623958,5624266-5624335,5624619-5624704,5624871-5624933,5625228-5625293,5625391-5625439	AT1G16470.1  CDS  gene_syn F3O9.27, F3O9_27, PAB1, PROTEASOME SUBUNIT PAB1  gene PAB1  function Encodes 20S proteasome subunit PAB1 (PAB1).  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_function endopeptidase activity|GO:0004175||IEA  go_function threonine-type endopeptidase activity|GO:0004298||IEA  go_component proteasome core complex|GO:0005839|9373170|TAS  go_component proteasome core complex|GO:0005839|9611183|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_function peptidase activity|GO:0008233||ISS  product PAB1 (PROTEASOME SUBUNIT PAB1); endopeptidase/ peptidase/ threonine-type endopeptidase  note PROTEASOME SUBUNIT PAB1 (PAB1); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, cytosolic ribosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome alpha-subunit, conserved site (InterPro:IPR000426), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: 20S proteasome alpha subunit B, putative (TAIR:AT1G79210.3); Has 4901 Blast hits to 4900 proteins in 370 species: Archae - 503; Bacteria - 35; Metazoa - 1915; Fungi - 1037; Plants - 574; Viruses - 0; Other Eukaryotes - 837 (source: NCBI BLink).  protein_id AT1G16470.1p  transcript_id AT1G16470.1  protein_id AT1G16470.1p  transcript_id AT1G16470.1  
At1g16470	chr1:005623122	0.0	W/5623122-5623162,5623241-5623317,5623401-5623465,5623589-5623635,5623728-5623803,5623891-5623958,5624266-5624335,5624619-5624704,5624871-5624933,5625228-5625293,5625391-5625439	AT1G16470.2  CDS  gene_syn F3O9.27, F3O9_27, PAB1, PROTEASOME SUBUNIT PAB1  gene PAB1  function Encodes 20S proteasome subunit PAB1 (PAB1).  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_function endopeptidase activity|GO:0004175||IEA  go_function threonine-type endopeptidase activity|GO:0004298||IEA  go_component proteasome core complex|GO:0005839|9373170|TAS  go_component proteasome core complex|GO:0005839|9611183|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_function peptidase activity|GO:0008233||ISS  product PAB1 (PROTEASOME SUBUNIT PAB1); endopeptidase/ peptidase/ threonine-type endopeptidase  note PROTEASOME SUBUNIT PAB1 (PAB1); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, cytosolic ribosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome alpha-subunit, conserved site (InterPro:IPR000426), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: 20S proteasome alpha subunit B, putative (TAIR:AT1G79210.3); Has 4901 Blast hits to 4900 proteins in 370 species: Archae - 503; Bacteria - 35; Metazoa - 1915; Fungi - 1037; Plants - 574; Viruses - 0; Other Eukaryotes - 837 (source: NCBI BLink).  protein_id AT1G16470.2p  transcript_id AT1G16470.2  protein_id AT1G16470.2p  transcript_id AT1G16470.2  
At1g16480	chr1:005625843	0.0	C/5625843-5628656	AT1G16480.1  CDS  gene_syn F3O9.28, F3O9_28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G13650.1).  protein_id AT1G16480.1p  transcript_id AT1G16480.1  protein_id AT1G16480.1p  transcript_id AT1G16480.1  
At1g16489	chr1:005629216	0.0	W/5629216-5630488	AT1G16489.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G16490  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G16489.1  
At1g16490	chr1:005630706	0.0	C/5630706-5630844,5630495-5630624,5629859-5630414	AT1G16490.1  CDS  gene_syn ATMYB58, F3O9.29, F3O9_29, MYB DOMAIN PROTEIN 58, MYB58  gene MYB58  function Member of the R2R3 factor gene family.  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process lignin biosynthetic process|GO:0009809|19122102|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|19122102|IDA  product MYB58 (MYB DOMAIN PROTEIN 58); DNA binding / transcription activator/ transcription factor  note MYB DOMAIN PROTEIN 58 (MYB58); FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: lignin biosynthetic process, regulation of transcription, DNA-dependent, regulation of secondary cell wall thickening; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB63 (MYB DOMAIN PROTEIN 63); DNA binding / transcription activator/ transcription factor (TAIR:AT1G79180.1); Has 6297 Blast hits to 5802 proteins in 349 species: Archae - 0; Bacteria - 0; Metazoa - 646; Fungi - 279; Plants - 3768; Viruses - 6; Other Eukaryotes - 1598 (source: NCBI BLink).  protein_id AT1G16490.1p  transcript_id AT1G16490.1  protein_id AT1G16490.1p  transcript_id AT1G16490.1  
At1g16500	chr1:005639079	0.0	W/5639079-5639306,5639444-5639995	AT1G16500.1  CDS  gene_syn F3O9.30, F3O9_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79160.1); Has 66 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 61; Viruses - 1; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16500.1p  transcript_id AT1G16500.1  protein_id AT1G16500.1p  transcript_id AT1G16500.1  
At1g16510	chr1:005644784	0.0	C/5644784-5645227	AT1G16510.1  CDS  gene_syn F3O9.31, F3O9_31  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT1G79130.1); Has 553 Blast hits to 551 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 552; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G16510.1p  transcript_id AT1G16510.1  protein_id AT1G16510.1p  transcript_id AT1G16510.1  
At1g16515	chr1:005647605	0.0	C/5647605-5647709	AT1G16515.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16515.1p  transcript_id AT1G16515.1  protein_id AT1G16515.1p  transcript_id AT1G16515.1  
At1g16520	chr1:005648904	0.0	W/5648904-5649173,5649613-5649681,5649784-5649837,5649983-5650040,5650125-5650199,5650280-5650513,5650596-5650641,5650744-5650822,5650906-5650998	AT1G16520.1  CDS  gene_syn F3O9.32  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56080.1); Has 169 Blast hits to 162 proteins in 51 species: Archae - 2; Bacteria - 0; Metazoa - 53; Fungi - 8; Plants - 72; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT1G16520.1p  transcript_id AT1G16520.1  protein_id AT1G16520.1p  transcript_id AT1G16520.1  
At1g16530	chr1:005652657	0.0	C/5652657-5652839,5651470-5651784	AT1G16530.1  CDS  gene_syn ASL9, ASYMMETRIC LEAVES 2 LIKE 9, F3O9.33, F3O9_33, LBD3, LOB DOMAIN-CONTAINING PROTEIN 3  gene ASL9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product ASL9 (ASYMMETRIC LEAVES 2 LIKE 9)  note ASYMMETRIC LEAVES 2 LIKE 9 (ASL9); INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD4 (LOB DOMAIN-CONTAINING PROTEIN 4) (TAIR:AT1G31320.1); Has 560 Blast hits to 557 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 560; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16530.1p  transcript_id AT1G16530.1  protein_id AT1G16530.1p  transcript_id AT1G16530.1  
At1g16540	chr1:005659465	0.0	W/5659465-5659567,5659991-5660089,5660290-5660348,5660449-5660767,5660917-5661043,5661335-5661440,5661523-5661568,5661828-5661866,5661936-5662092,5662299-5662401,5662641-5662757,5662937-5663014,5663119-5663220,5663339-5663438,5663779-5663889,5664005-5664069,5664137-5664288,5664358-5664590,5664661-5664794,5664897-5665007,5665103-5665201	AT1G16540.1  CDS  gene_syn ABA DEFICIENT 3, ABA3, ATABA3, F19K19.13, F19K19_13, LOS5, LOW OSMOTIC STRESS 5, MOLYBDENUM COFACTOR SULFURASE, SIR3, SIRTINOL RESISTANT 3  gene ABA3  function Encodes molybdenum cofactor sulfurase. Involved in Moco biosynthesis. Involved in the conversion of ABA-aldehyde to ABA, the last step of abscisic acid (ABA) biosynthesis. <i>sir</i> loss-of-function mutants are resistant to sirtinol, a modulator of auxin signaling.N terminal domain is similar to bacterial NifS suggesting a common mechanism for sulphur mobilization and transfer.  go_component cellular_component|GO:0005575||ND  go_process response to stress|GO:0006950|11549764|IMP  go_process response to osmotic stress|GO:0006970|11549764|IMP  go_process response to heat|GO:0009408|15923322|IMP  go_process response to cold|GO:0009409|11549764|IMP  go_process response to salt stress|GO:0009651|11549764|IMP  go_process abscisic acid biosynthetic process|GO:0009688|8893542|IMP  go_process auxin mediated signaling pathway|GO:0009734|15710899|IMP  go_process stomatal movement|GO:0010118|16959575|IMP  go_process sugar mediated signaling|GO:0010182|12663220|TAS  go_process molybdenum incorporation into molybdenum-molybdopterin complex|GO:0018315|11553608|IDA  go_process defense response to bacterium|GO:0042742|16959575|IMP  go_function Mo-molybdopterin cofactor sulfurase activity|GO:0008265|11553608|IDA  go_function selenocysteine lyase activity|GO:0009000|15561708|IDA  product ABA3 (ABA DEFICIENT 3); Mo-molybdopterin cofactor sulfurase/ selenocysteine lyase  note ABA DEFICIENT 3 (ABA3); FUNCTIONS IN: Mo-molybdopterin cofactor sulfurase activity, selenocysteine lyase activity; INVOLVED IN: in 11 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), MOSC, N-terminal beta barrel (InterPro:IPR005303), Aminotransferase, class V/Cysteine desulfurase (InterPro:IPR000192), Molybdenum cofactor sulfurase, C-terminal (InterPro:IPR005302), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: molybdenum cofactor sulfurase family protein (TAIR:AT1G30910.1); Has 5157 Blast hits to 5131 proteins in 1119 species: Archae - 65; Bacteria - 3017; Metazoa - 337; Fungi - 243; Plants - 152; Viruses - 1; Other Eukaryotes - 1342 (source: NCBI BLink).  protein_id AT1G16540.1p  transcript_id AT1G16540.1  protein_id AT1G16540.1p  transcript_id AT1G16540.1  
At1g16550	chr1:005665907	0.0	W/5665907-5668209	AT1G16550.1  pseudogenic_transcript  pseudo  gene_syn F19K19.20  note pseudogene, putative cell division cycle protein, blastp match of 53% identity and 2.4e-136 P-value to GP|6069665|dbj|BAA85441.1||AP000616 EST D15969(C1695) corresponds to a region of the predicted gene.~similar to valosin-containing protein (U20213) {Oryza sativa (japonica cultivar-group)}  
At1g16560	chr1:005668945	0.0	W/5668945-5669039,5669160-5669409,5669493-5669689,5669779-5669966,5670045-5670343	AT1G16560.1  CDS  gene_syn F19K19.12, F19K19_12  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Per1-like family protein  note Per1-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Per1-like (InterPro:IPR007217); BEST Arabidopsis thaliana protein match is: Per1-like protein-related (TAIR:AT5G62130.1); Has 248 Blast hits to 238 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 101; Fungi - 103; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G16560.1p  transcript_id AT1G16560.1  protein_id AT1G16560.1p  transcript_id AT1G16560.1  
At1g16560	chr1:005668945	0.0	W/5668945-5669039,5669160-5669409,5669493-5669689,5669779-5669966,5670045-5670343	AT1G16560.2  CDS  gene_syn F19K19.12, F19K19_12  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Per1-like family protein  note Per1-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Per1-like (InterPro:IPR007217); BEST Arabidopsis thaliana protein match is: Per1-like protein-related (TAIR:AT5G62130.1); Has 248 Blast hits to 238 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 101; Fungi - 103; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G16560.2p  transcript_id AT1G16560.2  protein_id AT1G16560.2p  transcript_id AT1G16560.2  
At1g16560	chr1:005668945	0.0	W/5668945-5669039,5669160-5669409,5669493-5669689,5669779-5669966,5670045-5670343	AT1G16560.3  CDS  gene_syn F19K19.12, F19K19_12  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Per1-like family protein  note Per1-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Per1-like (InterPro:IPR007217); BEST Arabidopsis thaliana protein match is: Per1-like protein-related (TAIR:AT5G62130.1); Has 248 Blast hits to 238 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 101; Fungi - 103; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G16560.3p  transcript_id AT1G16560.3  protein_id AT1G16560.3p  transcript_id AT1G16560.3  
At1g16560	chr1:005669234	0.0	W/5669234-5669413,5669493-5669689,5669779-5669966,5670045-5670343	AT1G16560.4  CDS  gene_syn F19K19.12, F19K19_12  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Per1-like family protein  note Per1-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Per1-like (InterPro:IPR007217); BEST Arabidopsis thaliana protein match is: Per1-like protein-related (TAIR:AT5G62130.1); Has 241 Blast hits to 231 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 99; Plants - 40; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G16560.4p  transcript_id AT1G16560.4  protein_id AT1G16560.4p  transcript_id AT1G16560.4  
At1g16570	chr1:005673331	0.0	C/5673331-5673423,5673223-5673256,5673091-5673146,5672862-5672999,5672617-5672765,5672433-5672522,5672256-5672322,5672085-5672148,5671889-5671994,5671658-5671800,5671421-5671593,5671250-5671302,5670880-5671177,5670763-5670789	AT1G16570.2  CDS  gene_syn F19K19.11, F19K19_11  go_component mitochondrion|GO:0005739||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyl transferase family 1 protein  note glycosyl transferase family 1 protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); Has 512 Blast hits to 501 proteins in 213 species: Archae - 24; Bacteria - 143; Metazoa - 133; Fungi - 92; Plants - 27; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT1G16570.2p  transcript_id AT1G16570.2  protein_id AT1G16570.2p  transcript_id AT1G16570.2  
At1g16570	chr1:005673331	0.0	C/5673331-5673423,5673223-5673256,5673091-5673146,5672862-5672999,5672617-5672765,5672433-5672522,5672256-5672322,5672085-5672148,5671889-5671994,5671658-5671800,5671421-5671593,5671250-5671302,5671102-5671177,5670880-5671008,5670763-5670789	AT1G16570.1  CDS  gene_syn F19K19.11, F19K19_11  go_component mitochondrion|GO:0005739||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyl transferase family 1 protein  note glycosyl transferase family 1 protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); Has 525 Blast hits to 512 proteins in 217 species: Archae - 24; Bacteria - 149; Metazoa - 135; Fungi - 91; Plants - 27; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).  protein_id AT1G16570.1p  transcript_id AT1G16570.1  protein_id AT1G16570.1p  transcript_id AT1G16570.1  
At1g16590	chr1:005673886	0.0	W/5673886-5673913,5674005-5674085,5674160-5674272,5674362-5674551,5674655-5674890	AT1G16590.1  CDS  gene_syn ATREV7, F19K19.10, F19K19_10, REV7  gene REV7  function putative translesion synthesis polymerase zeta subunit, homologous to Y-family DNA polymerases, contains BRCT domain. Mutants are sensitive to UV-B radiation. Gene is involved in damage-tolerance mechanisms through translesion synthesis(TLS).  go_component cellular_component|GO:0005575||ND  go_process response to DNA damage stimulus|GO:0006974|15908599|IMP  go_process mitotic cell cycle spindle assembly checkpoint|GO:0007094||ISS  go_process response to UV-B|GO:0010224|15908599|IMP  go_function DNA binding|GO:0003677||ISS  product REV7; DNA binding  note REV7; FUNCTIONS IN: DNA binding; INVOLVED IN: response to UV-B, response to DNA damage stimulus, mitotic cell cycle spindle assembly checkpoint; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding HORMA (InterPro:IPR003511); Has 214 Blast hits to 214 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 50; Plants - 21; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G16590.1p  transcript_id AT1G16590.1  protein_id AT1G16590.1p  transcript_id AT1G16590.1  
At1g16600	chr1:005675169	0.0	W/5675169-5675433	AT1G16600.1  pseudogenic_transcript  pseudo  gene_syn F19K19.21  note pseudogene, putative cycloartenol synthase  
At1g16610	chr1:005678487	0.0	C/5678487-5678686,5678293-5678364,5678127-5678209,5677892-5677938,5677725-5677805,5677466-5677634,5677154-5677355,5677017-5677082,5676761-5676877,5676429-5676495,5676282-5676319,5675925-5676006	AT1G16610.2  CDS  gene_syn ARGININE/SERINE-RICH PROTEIN SR45, F19K19.9, F19K19_9, SR45  gene SR45  function SR spliceosome protein, interacts with SR33 and the U1-70K protein of the U1 snRNP.  go_component nucleolus|GO:0005730|15496452|IDA  go_component nucleoplasm|GO:0005654|14675452|IDA  go_component nuclear speck|GO:0016607|14675452|IDA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|10593939|IPI  go_process RNA splicing|GO:0008380|16807317|NAS  go_function RNA binding|GO:0003723||ISS  go_function protein binding|GO:0005515|10593939|IPI  product SR45; RNA binding / protein binding  note SR45; FUNCTIONS IN: protein binding, RNA binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nucleoplasm, nuclear speck, nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: arginine/serine-rich protein-related (TAIR:AT1G79100.1); Has 54717 Blast hits to 31639 proteins in 1133 species: Archae - 38; Bacteria - 4589; Metazoa - 25801; Fungi - 6253; Plants - 4909; Viruses - 1176; Other Eukaryotes - 11951 (source: NCBI BLink).  protein_id AT1G16610.2p  transcript_id AT1G16610.2  protein_id AT1G16610.2p  transcript_id AT1G16610.2  
At1g16610	chr1:005678487	0.0	C/5678487-5678686,5678293-5678364,5678127-5678209,5677892-5677938,5677725-5677805,5677466-5677634,5677154-5677376,5677017-5677082,5676761-5676877,5676429-5676495,5676282-5676319,5675925-5676006	AT1G16610.1  CDS  gene_syn ARGININE/SERINE-RICH PROTEIN SR45, F19K19.9, F19K19_9, SR45  gene SR45  function SR spliceosome protein, interacts with SR33 and the U1-70K protein of the U1 snRNP.  go_component nucleolus|GO:0005730|15496452|IDA  go_component nucleoplasm|GO:0005654|14675452|IDA  go_component nuclear speck|GO:0016607|14675452|IDA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|10593939|IPI  go_process RNA splicing|GO:0008380|16807317|NAS  go_function RNA binding|GO:0003723||ISS  go_function protein binding|GO:0005515|10593939|IPI  product SR45; RNA binding / protein binding  note SR45; FUNCTIONS IN: protein binding, RNA binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nucleoplasm, nuclear speck, nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: arginine/serine-rich protein-related (TAIR:AT1G79100.1); Has 55298 Blast hits to 32098 proteins in 1164 species: Archae - 43; Bacteria - 4683; Metazoa - 26224; Fungi - 6327; Plants - 4923; Viruses - 1224; Other Eukaryotes - 11874 (source: NCBI BLink).  protein_id AT1G16610.1p  transcript_id AT1G16610.1  protein_id AT1G16610.1p  transcript_id AT1G16610.1  
At1g16620	chr1:005679819	0.0	W/5679819-5681188	AT1G16620.1  mRNA_TE_gene  pseudo  gene_syn F19K19.24  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 5.7e-158 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At1g16630	chr1:005682212	0.0	C/5682212-5684749	AT1G16630.1  CDS  gene_syn F19K19.8, F19K19_8  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16270.1); Has 11932 Blast hits to 5221 proteins in 448 species: Archae - 45; Bacteria - 656; Metazoa - 5756; Fungi - 729; Plants - 423; Viruses - 460; Other Eukaryotes - 3863 (source: NCBI BLink).  protein_id AT1G16630.1p  transcript_id AT1G16630.1  protein_id AT1G16630.1p  transcript_id AT1G16630.1  
At1g16640	chr1:005686763	0.0	W/5686763-5686828,5687195-5687533	AT1G16640.1  CDS  gene_syn F19K19.7, F19K19_7  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcriptional factor B3 family protein  note transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT3G06220.1); Has 113 Blast hits to 106 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16640.1p  transcript_id AT1G16640.1  protein_id AT1G16640.1p  transcript_id AT1G16640.1  
At1g16650	chr1:005687994	0.0	W/5687994-5688116,5688195-5688290,5688395-5688478,5688573-5688647,5689021-5689101,5689311-5689450,5689612-5689848,5689973-5690147,5690258-5690341,5690455-5690584,5690661-5690818,5690919-5691101	AT1G16650.1  CDS  gene_syn F19K19.6, F19K19_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; Has 381 Blast hits to 335 proteins in 115 species: Archae - 0; Bacteria - 42; Metazoa - 234; Fungi - 61; Plants - 12; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT1G16650.1p  transcript_id AT1G16650.1  protein_id AT1G16650.1p  transcript_id AT1G16650.1  
At1g16660	chr1:005692024	0.0	W/5692024-5696458	AT1G16660.1  mRNA_TE_gene  pseudo  gene_syn F19K19.5  note Transposable element gene, copia-like retrotransposon family, has a 2.0e-268 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At1g16670	chr1:005697846	0.0	W/5697846-5697900,5698023-5698138,5698227-5698437,5698526-5698769,5698860-5699010,5699097-5699492	AT1G16670.1  CDS  gene_syn F19K19.4, F19K19_4  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G09010.1); Has 86261 Blast hits to 85145 proteins in 3101 species: Archae - 56; Bacteria - 7465; Metazoa - 37883; Fungi - 6798; Plants - 18959; Viruses - 382; Other Eukaryotes - 14718 (source: NCBI BLink).  protein_id AT1G16670.1p  transcript_id AT1G16670.1  protein_id AT1G16670.1p  transcript_id AT1G16670.1  
At1g16680	chr1:005702813	0.0	W/5702813-5702845,5702936-5702957,5703036-5703250,5703405-5703490,5703751-5704168,5704251-5704331,5704433-5704537,5704633-5704746,5704848-5704931,5705010-5705081,5705277-5705537	AT1G16680.1  CDS  gene_syn F19K19.3, F19K19_3  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putative  note DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putative; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putative (TAIR:AT1G79030.1); Has 12678 Blast hits to 12678 proteins in 1886 species: Archae - 78; Bacteria - 4315; Metazoa - 2676; Fungi - 1053; Plants - 898; Viruses - 36; Other Eukaryotes - 3622 (source: NCBI BLink).  protein_id AT1G16680.1p  transcript_id AT1G16680.1  protein_id AT1G16680.1p  transcript_id AT1G16680.1  
At1g16690	chr1:005706458	0.0	W/5706458-5706616,5706706-5706838,5706915-5707017,5707379-5707502,5707820-5707885,5708010-5708048,5708150-5708230,5708333-5708380,5708475-5708525,5708640-5708708,5708811-5709047,5709162-5709371	AT1G16690.1  CDS  gene_syn F19K19.2, F19K19_2  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor-related  note transcription factor-related; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: transcription factor-related (TAIR:AT1G79020.1); Has 281 Blast hits to 281 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 154; Fungi - 58; Plants - 37; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT1G16690.1p  transcript_id AT1G16690.1  protein_id AT1G16690.1p  transcript_id AT1G16690.1  
At1g16700	chr1:005710012	0.0	W/5710012-5710065,5710481-5710559,5710660-5710713,5710824-5710915,5710996-5711109,5711208-5711275,5711387-5711498,5711599-5711694	AT1G16700.1  CDS  gene_syn ARABIDOPSIS THALIANA MILDEW RESISTANCE LOCUS O 14, ATMLO14, F19K19.1, F19K19_1  go_function metal ion binding|GO:0046872|12606038|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|12606038|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_function NADH dehydrogenase (ubiquinone) activity|GO:0008137||ISS  product NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial, putative  note NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial, putative; FUNCTIONS IN: NADH dehydrogenase (ubiquinone) activity, metal ion binding; LOCATED IN: mitochondrion, respiratory chain complex I; CONTAINS InterPro DOMAIN/s: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup (InterPro:IPR001450), NADH-quinone oxidoreductase, chain I (InterPro:IPR010226), 4Fe-4S ferredoxin, iron-sulphur binding, conserved site (InterPro:IPR017900), 4Fe-4S ferredoxin, iron-sulpur binding domain (InterPro:IPR017896), Alpha-helical ferredoxin (InterPro:IPR009051); BEST Arabidopsis thaliana protein match is: NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY) (TAIR:AT1G79010.1); Has 7775 Blast hits to 7384 proteins in 1556 species: Archae - 918; Bacteria - 3928; Metazoa - 127; Fungi - 70; Plants - 695; Viruses - 0; Other Eukaryotes - 2037 (source: NCBI BLink).  protein_id AT1G16700.1p  transcript_id AT1G16700.1  protein_id AT1G16700.1p  transcript_id AT1G16700.1  
At1g16705	chr1:005712469	0.0	W/5712469-5712515,5712877-5712991,5713181-5713333,5713448-5713522	AT1G16705.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product p300/CBP acetyltransferase-related protein-related  note p300/CBP acetyltransferase-related protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: HAC12 (histone acetyltransferase of the CBP family 12); H3/H4 histone acetyltransferase/ histone acetyltransferase/ transcription cofactor (TAIR:AT1G16710.1); Has 17 Blast hits to 17 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16705.2p  transcript_id AT1G16705.2  protein_id AT1G16705.2p  transcript_id AT1G16705.2  
At1g16705	chr1:005712469	0.0	W/5712469-5712515,5712877-5712991,5713181-5713333,5713451-5713522	AT1G16705.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product p300/CBP acetyltransferase-related protein-related  note p300/CBP acetyltransferase-related protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: HAC12 (histone acetyltransferase of the CBP family 12); H3/H4 histone acetyltransferase/ histone acetyltransferase/ transcription cofactor (TAIR:AT1G16710.1); Has 17 Blast hits to 17 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16705.1p  transcript_id AT1G16705.1  protein_id AT1G16705.1p  transcript_id AT1G16705.1  
At1g16710	chr1:005714692	0.0	W/5714692-5714933,5715174-5715288,5715376-5715637,5715724-5716316,5716422-5718023,5718146-5718442,5718537-5718815,5718976-5719104,5719217-5719417,5719505-5719647,5719736-5720048,5720163-5720302,5720461-5720539,5720653-5721045,5721229-5721446,5721668-5721782	AT1G16710.1  CDS  gene_syn F19K19.17, HAC12, histone acetyltransferase of the CBP family 12  gene HAC12  function Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates. No single prior lysine acetylation is sufficient to block HAC12 acetylation of the H3 or H4 peptides, suggesting that HAC12 can acetylate any of several lysines present in the peptides.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process protein amino acid acetylation|GO:0006473|17144897|IMP  go_process flower development|GO:0009908|17144897|IGI  go_function transcription cofactor activity|GO:0003712||ISS  go_function histone acetyltransferase activity|GO:0004402|12466527|ISS  go_function H3/H4 histone acetyltransferase activity|GO:0004406|17877703|IDA  product HAC12 (histone acetyltransferase of the CBP family 12); H3/H4 histone acetyltransferase/ histone acetyltransferase/ transcription cofactor  note histone acetyltransferase of the CBP family 12 (HAC12); FUNCTIONS IN: histone acetyltransferase activity, transcription cofactor activity, H3/H4 histone acetyltransferase activity; INVOLVED IN: flower development, regulation of transcription, DNA-dependent, protein amino acid acetylation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, TAZ-type (InterPro:IPR000197), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, ZZ-type (InterPro:IPR000433), Transcriptional coactivation (InterPro:IPR009255); BEST Arabidopsis thaliana protein match is: HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1); H3/H4 histone acetyltransferase/ histone acetyltransferase/ transcription cofactor (TAIR:AT1G79000.1); Has 5334 Blast hits to 3823 proteins in 228 species: Archae - 0; Bacteria - 171; Metazoa - 1785; Fungi - 438; Plants - 274; Viruses - 18; Other Eukaryotes - 2648 (source: NCBI BLink).  protein_id AT1G16710.1p  transcript_id AT1G16710.1  protein_id AT1G16710.1p  transcript_id AT1G16710.1  
At1g16720	chr1:005723161	0.0	W/5723161-5723730,5723824-5724036,5724139-5724343,5724441-5724516,5724677-5724812,5724897-5725001,5725126-5725206,5725309-5725398,5725537-5725602,5725669-5725725,5725825-5725902,5726051-5726098,5726177-5726248	AT1G16720.1  CDS  gene_syn F19K19.14, HCF173, high chlorophyll fluorescence phenotype 173  gene HCF173  function Encodes HCF173, a protein with weak similarities to the superfamily of the short-chain dehydrogenases/reductases. HCF173 is involved in the initiation of translation of the psbA mRNA. Mutants shows a high chlorophyll fluorescence phenotype (hcf) and are severely affected in the accumulation of PSII subunits. The protein HCF173 is localized in the chloroplast, where it is mainly associated with the membrane system and is part of a higher molecular weight complex with psbA mRNA as a component of this complex.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function transcription repressor activity|GO:0016564||IEA  go_process translational initiation|GO:0006413|17435084|IMP  go_process photosystem II assembly|GO:0010207|17435084|IMP  product HCF173 (high chlorophyll fluorescence phenotype 173); binding / catalytic/ transcription repressor  note high chlorophyll fluorescence phenotype 173 (HCF173); FUNCTIONS IN: transcription repressor activity, binding, catalytic activity; INVOLVED IN: photosystem II assembly, translational initiation; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 (InterPro:IPR013857), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: binding / catalytic/ transcription repressor (TAIR:AT4G18810.1); Has 1260 Blast hits to 1145 proteins in 270 species: Archae - 10; Bacteria - 816; Metazoa - 6; Fungi - 4; Plants - 275; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT1G16720.1p  transcript_id AT1G16720.1  protein_id AT1G16720.1p  transcript_id AT1G16720.1  
At1g16730	chr1:005726848	0.0	C/5726848-5727312,5726617-5726760	AT1G16730.1  CDS  gene_syn F19K19.18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 10 Blast hits to 10 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G16730.1p  transcript_id AT1G16730.1  protein_id AT1G16730.1p  transcript_id AT1G16730.1  
At1g16740	chr1:005727773	0.0	W/5727773-5727958,5728756-5728950	AT1G16740.1  CDS  gene_syn F19K19.15  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function RNA binding|GO:0003723||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L20 family protein  note ribosomal protein L20 family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L20, bacterial-type (InterPro:IPR005812), Ribosomal protein L20 (InterPro:IPR005813); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATCG00660.1); Has 5711 Blast hits to 5711 proteins in 1648 species: Archae - 0; Bacteria - 2947; Metazoa - 105; Fungi - 0; Plants - 471; Viruses - 0; Other Eukaryotes - 2188 (source: NCBI BLink).  protein_id AT1G16740.1p  transcript_id AT1G16740.1  protein_id AT1G16740.1p  transcript_id AT1G16740.1  
At1g16750	chr1:005731658	0.0	C/5731658-5731689,5731528-5731558,5731338-5731424,5731131-5731247,5730884-5731033,5730317-5730804,5730136-5730235,5729996-5730055,5729812-5729904,5729613-5729732,5729221-5729532	AT1G16750.1  CDS  gene_syn F19K19.16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT3G13000.2); Has 420 Blast hits to 403 proteins in 70 species: Archae - 0; Bacteria - 56; Metazoa - 34; Fungi - 2; Plants - 297; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT1G16750.1p  transcript_id AT1G16750.1  protein_id AT1G16750.1p  transcript_id AT1G16750.1  
At1g16760	chr1:005734234	0.0	W/5734234-5734411,5734542-5734633,5734728-5734849,5734949-5735136,5735231-5735285,5735364-5735694,5735791-5735892,5735975-5736385,5736510-5737307	AT1G16760.1  CDS  gene_syn F19K19.25  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process response to stress|GO:0006950||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G78940.1); Has 81479 Blast hits to 80573 proteins in 3070 species: Archae - 67; Bacteria - 7602; Metazoa - 35854; Fungi - 6155; Plants - 18414; Viruses - 263; Other Eukaryotes - 13124 (source: NCBI BLink).  protein_id AT1G16760.1p  transcript_id AT1G16760.1  protein_id AT1G16760.1p  transcript_id AT1G16760.1  
At1g16770	chr1:005737900	0.0	W/5737900-5737953,5738045-5738284,5738364-5738514,5738581-5739110	AT1G16770.1  CDS  gene_syn F17F16.12, F17F16_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 59 Blast hits to 59 proteins in 31 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 39; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16770.1p  transcript_id AT1G16770.1  protein_id AT1G16770.1p  transcript_id AT1G16770.1  
At1g16770	chr1:005738135	0.0	W/5738135-5738284,5738364-5738514,5738581-5739110	AT1G16770.2  CDS  gene_syn F17F16.12, F17F16_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 55 Blast hits to 55 proteins in 29 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 35; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16770.2p  transcript_id AT1G16770.2  protein_id AT1G16770.2p  transcript_id AT1G16770.2  
At1g16780	chr1:005743471	0.0	C/5743471-5743569,5743126-5743329,5742870-5743021,5742637-5742784,5742435-5742567,5741888-5742060,5741672-5741792,5741310-5741497,5740689-5741126,5740441-5740605,5740195-5740350,5740003-5740114,5739697-5739916,5739468-5739567	AT1G16780.1  CDS  gene_syn F17F16.2, F17F16_2  go_component vacuole|GO:0005773|15215502|IDA  go_process proton transport|GO:0015992||IEA  go_function inorganic diphosphatase activity|GO:0004427||IEA  go_function hydrogen-translocating pyrophosphatase activity|GO:0009678||IEA  product vacuolar-type H+-translocating inorganic pyrophosphatase, putative  note vacuolar-type H+-translocating inorganic pyrophosphatase, putative; FUNCTIONS IN: inorganic diphosphatase activity, hydrogen-translocating pyrophosphatase activity; INVOLVED IN: proton transport; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inorganic H+ pyrophosphatase (InterPro:IPR004131); BEST Arabidopsis thaliana protein match is: AVP2 (ARABIDOPSIS VACUOLAR H+-PYROPHOSPHATASE 2); hydrogen-translocating pyrophosphatase (TAIR:AT1G78920.2); Has 5737 Blast hits to 5721 proteins in 477 species: Archae - 54; Bacteria - 691; Metazoa - 2; Fungi - 0; Plants - 189; Viruses - 0; Other Eukaryotes - 4801 (source: NCBI BLink).  protein_id AT1G16780.1p  transcript_id AT1G16780.1  protein_id AT1G16780.1p  transcript_id AT1G16780.1  
At1g16790	chr1:005744638	0.0	W/5744638-5745072	AT1G16790.1  CDS  gene_syn F17F16.10, F17F16_10  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ribosomal protein-related  note ribosomal protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; Has 4 Blast hits to 4 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16790.1p  transcript_id AT1G16790.1  protein_id AT1G16790.1p  transcript_id AT1G16790.1  
At1g16800	chr1:005755136	0.0	C/5755136-5755263,5754611-5754995,5754291-5754407,5753865-5754011,5753165-5753215,5752983-5753056,5752391-5752569,5751991-5752180,5751783-5751891,5751604-5751655,5751105-5751226,5750507-5750777,5749275-5750446,5748604-5749006,5747551-5748467,5747405-5747470,5747201-5747326,5746798-5747036,5745659-5746707,5745523-5745545	AT1G16800.1  CDS  gene_syn F17F16.1, F17F16_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function poly(U) binding|GO:0008266|17511964|IDA  product tRNA-splicing endonuclease positive effector-related  note tRNA-splicing endonuclease positive effector-related; FUNCTIONS IN: poly(U) binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: F mature embryo stage, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: tRNA-splicing endonuclease positive effector-related (TAIR:AT4G30100.1); Has 7446 Blast hits to 6395 proteins in 809 species: Archae - 130; Bacteria - 1032; Metazoa - 2551; Fungi - 897; Plants - 422; Viruses - 240; Other Eukaryotes - 2174 (source: NCBI BLink).  protein_id AT1G16800.1p  transcript_id AT1G16800.1  protein_id AT1G16800.1p  transcript_id AT1G16800.1  
At1g16810	chr1:005756150	0.0	W/5756150-5756297,5756408-5756694	AT1G16810.1  CDS  gene_syn F17F16.25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1754, eukaryotic (InterPro:IPR013865); Has 275 Blast hits to 274 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 62; Plants - 34; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G16810.1p  transcript_id AT1G16810.1  protein_id AT1G16810.1p  transcript_id AT1G16810.1  
At1g16810	chr1:005756150	0.0	W/5756150-5756297,5756408-5756694	AT1G16810.2  CDS  gene_syn F17F16.25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1754, eukaryotic (InterPro:IPR013865); Has 275 Blast hits to 274 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 62; Plants - 34; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G16810.2p  transcript_id AT1G16810.2  protein_id AT1G16810.2p  transcript_id AT1G16810.2  
At1g16820	chr1:005758367	0.0	C/5758367-5758464,5757481-5757559,5757308-5757397,5757199-5757213	AT1G16820.1  CDS  gene_syn F17F16.15  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_function hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances|GO:0016820||IEA  product vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related  note vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related; FUNCTIONS IN: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal (InterPro:IPR000793); BEST Arabidopsis thaliana protein match is: VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A); ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism (TAIR:AT1G78900.2); Has 101 Blast hits to 101 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G16820.1p  transcript_id AT1G16820.1  protein_id AT1G16820.1p  transcript_id AT1G16820.1  
At1g16825	chr1:005758877	0.0	W/5758877-5759043,5759650-5759791,5760071-5760140,5760252-5760340	AT1G16825.1  CDS  go_component endoplasmic reticulum|GO:0005783||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78895.1).  protein_id AT1G16825.1p  transcript_id AT1G16825.1  protein_id AT1G16825.1p  transcript_id AT1G16825.1  
At1g16830	chr1:005760793	0.0	W/5760793-5762619	AT1G16830.1  CDS  gene_syn F17F16.24  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: MEE40 (maternal effect embryo arrest 40) (TAIR:AT3G53700.1); Has 16848 Blast hits to 5324 proteins in 149 species: Archae - 2; Bacteria - 6; Metazoa - 176; Fungi - 119; Plants - 16112; Viruses - 0; Other Eukaryotes - 433 (source: NCBI BLink).  protein_id AT1G16830.1p  transcript_id AT1G16830.1  protein_id AT1G16830.1p  transcript_id AT1G16830.1  
At1g16840	chr1:005763499	0.0	C/5763499-5763984	AT1G16840.2  CDS  gene_syn F17F16.27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 50 Blast hits to 50 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16840.2p  transcript_id AT1G16840.2  protein_id AT1G16840.2p  transcript_id AT1G16840.2  
At1g16840	chr1:005763579	0.0	C/5763579-5763984,5763111-5763190	AT1G16840.1  CDS  gene_syn F17F16.27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 50 Blast hits to 50 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16840.1p  transcript_id AT1G16840.1  protein_id AT1G16840.1p  transcript_id AT1G16840.1  
At1g16840	chr1:005763579	0.0	C/5763579-5763984,5763111-5763190	AT1G16840.3  CDS  gene_syn F17F16.27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 50 Blast hits to 50 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16840.3p  transcript_id AT1G16840.3  protein_id AT1G16840.3p  transcript_id AT1G16840.3  
At1g16840	chr1:005763579	0.0	C/5763579-5763984,5763111-5763190	AT1G16840.4  CDS  gene_syn F17F16.27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 50 Blast hits to 50 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16840.4p  transcript_id AT1G16840.4  protein_id AT1G16840.4p  transcript_id AT1G16840.4  
At1g16850	chr1:005765374	0.0	C/5765374-5765618,5765062-5765275	AT1G16850.1  CDS  gene_syn F17F16.17  go_component endomembrane system|GO:0012505||IEA  go_process response to salt stress|GO:0009651|17888165|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, leaf apex, male gametophyte, flower, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; Has 9 Blast hits to 9 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16850.1p  transcript_id AT1G16850.1  protein_id AT1G16850.1p  transcript_id AT1G16850.1  
At1g16858	chr1:005767516	0.0	W/5767516-5767593	AT1G16858.1  CDS  gene_syn CPuORF55, Conserved peptide upstream open reading frame 55  gene CPuORF55  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF55 represents a conserved upstream opening reading frame relative to major ORF AT1G16860.1  product CPuORF55 (Conserved peptide upstream open reading frame 55)  note Conserved peptide upstream open reading frame 55 (CPuORF55); Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G16858.1p  transcript_id AT1G16858.1  protein_id AT1G16858.1p  transcript_id AT1G16858.1  
At1g16860	chr1:005768280	0.0	W/5768280-5769143,5769431-5769586,5769686-5769897,5769991-5770183	AT1G16860.1  CDS  gene_syn F17F16.16  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  product merozoite surface protein-related  note merozoite surface protein-related; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: balbiani ring 1-related / BR1-related (TAIR:AT1G78880.1); Has 506 Blast hits to 199 proteins in 70 species: Archae - 0; Bacteria - 16; Metazoa - 25; Fungi - 24; Plants - 85; Viruses - 0; Other Eukaryotes - 356 (source: NCBI BLink).  protein_id AT1G16860.1p  transcript_id AT1G16860.1  protein_id AT1G16860.1p  transcript_id AT1G16860.1  
At1g16870	chr1:005772721	0.0	C/5772721-5773157,5772446-5772612,5772027-5772238,5771692-5771946,5771489-5771575,5771245-5771417,5770964-5771075	AT1G16870.1  CDS  gene_syn F17F16.14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial 28S ribosomal protein S29-related  note mitochondrial 28S ribosomal protein S29-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 184 Blast hits to 183 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 92; Fungi - 30; Plants - 19; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT1G16870.1p  transcript_id AT1G16870.1  protein_id AT1G16870.1p  transcript_id AT1G16870.1  
At1g16880	chr1:005773796	0.0	W/5773796-5773950,5774332-5774377,5774464-5774601,5774733-5774827,5774969-5775053,5775150-5775209,5775540-5775595,5775704-5775809,5775913-5775981,5776063-5776125	AT1G16880.1  CDS  gene_syn F17F16.13  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component stromule|GO:0010319|16923014|IDA  go_process response to cold|GO:0009409|16923014|IEP  product uridylyltransferase-related  note uridylyltransferase-related; INVOLVED IN: response to cold; LOCATED IN: chloroplast thylakoid membrane, stromule, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: ACT domain-containing protein (TAIR:AT5G04740.1); Has 304 Blast hits to 276 proteins in 50 species: Archae - 0; Bacteria - 70; Metazoa - 0; Fungi - 0; Plants - 178; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT1G16880.1p  transcript_id AT1G16880.1  protein_id AT1G16880.1p  transcript_id AT1G16880.1  
At1g16880	chr1:005773796	0.0	W/5773796-5773950,5774332-5774377,5774464-5774601,5774733-5774827,5774969-5775053,5775150-5775272	AT1G16880.2  CDS  gene_syn F17F16.13  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component stromule|GO:0010319|16923014|IDA  go_process response to cold|GO:0009409|16923014|IEP  product uridylyltransferase-related  note uridylyltransferase-related; INVOLVED IN: response to cold; LOCATED IN: chloroplast thylakoid membrane, stromule, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: ACT domain-containing protein (TAIR:AT5G04740.1); Has 106 Blast hits to 106 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G16880.2p  transcript_id AT1G16880.2  protein_id AT1G16880.2p  transcript_id AT1G16880.2  
At1g16890	chr1:005777852	0.0	C/5777852-5777903,5777414-5777472,5777079-5777120,5776893-5776966,5776687-5776784,5776550-5776587	AT1G16890.1  CDS  gene_syn F17F16.19, UBC13B, UBC36, UBIQUITIN CONJUGATING ENZYME 13B, UBIQUITIN-CONJUGATING ENZYME 36  gene UBC36  function UBC36/UBC13B encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair. It can bind to the MMZ/UEV1 proteins in vitro.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component UBC13-MMS2 complex|GO:0031372|18178771|IPI  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|18178771|IPI  product ubiquitin-conjugating enzyme, putative  note UBIQUITIN-CONJUGATING ENZYME 36 (UBC36); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: UBC13-MMS2 complex, plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC35 (UBIQUITIN-CONJUGATING ENZYME 35); protein binding / ubiquitin-protein ligase (TAIR:AT1G78870.2); Has 7425 Blast hits to 7423 proteins in 305 species: Archae - 0; Bacteria - 2; Metazoa - 3670; Fungi - 1393; Plants - 1055; Viruses - 19; Other Eukaryotes - 1286 (source: NCBI BLink).  protein_id AT1G16890.1p  transcript_id AT1G16890.1  protein_id AT1G16890.1p  transcript_id AT1G16890.1  
At1g16890	chr1:005778292	0.0	C/5778292-5778327,5778062-5778089,5777852-5777938,5777414-5777472,5777079-5777120,5776893-5776966,5776687-5776784,5776550-5776587	AT1G16890.2  CDS  gene_syn F17F16.19, UBC13B, UBC36, UBIQUITIN CONJUGATING ENZYME 13B, UBIQUITIN-CONJUGATING ENZYME 36  gene UBC36  function UBC36/UBC13B encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair. It can bind to the MMZ/UEV1 proteins in vitro.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component UBC13-MMS2 complex|GO:0031372|18178771|IPI  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|18178771|IPI  product ubiquitin-conjugating enzyme, putative  note UBIQUITIN-CONJUGATING ENZYME 36 (UBC36); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: UBC13-MMS2 complex, plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC35 (UBIQUITIN-CONJUGATING ENZYME 35); protein binding / ubiquitin-protein ligase (TAIR:AT1G78870.2); Has 7661 Blast hits to 7656 proteins in 307 species: Archae - 0; Bacteria - 2; Metazoa - 3726; Fungi - 1457; Plants - 1104; Viruses - 19; Other Eukaryotes - 1353 (source: NCBI BLink).  protein_id AT1G16890.2p  transcript_id AT1G16890.2  protein_id AT1G16890.2p  transcript_id AT1G16890.2  
At1g16900	chr1:005782023	0.0	C/5782023-5782303,5781642-5781729,5781392-5781551,5780961-5781178,5780532-5780827,5780273-5780384,5780034-5780172,5779665-5779861,5779482-5779571,5779262-5779393	AT1G16900.1  CDS  gene_syn F17F16.20  function curculin-like (mannose-binding) lectin family protein, very low similarity to Ser Thr protein kinase GI:2598067 from (Zea mays); contains Pfam lectin (probable mannose binding) domain PF01453 but not the protein kinase domain of the Z. mays protein  go_component intrinsic to endoplasmic reticulum membrane|GO:0031227||IEA  go_process GPI anchor biosynthetic process|GO:0006506||IEA  go_function sugar binding|GO:0005529||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product sugar binding / transferase, transferring glycosyl groups  note sugar binding / transferase, transferring glycosyl groups; FUNCTIONS IN: sugar binding, transferase activity, transferring glycosyl groups; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: intrinsic to endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Alg9-like mannosyltransferase (InterPro:IPR005599); BEST Arabidopsis thaliana protein match is: mannosyltransferase, putative (TAIR:AT5G14850.2); Has 604 Blast hits to 593 proteins in 135 species: Archae - 0; Bacteria - 14; Metazoa - 263; Fungi - 204; Plants - 50; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT1G16900.1p  transcript_id AT1G16900.1  protein_id AT1G16900.1p  transcript_id AT1G16900.1  
At1g16905	chr1:005782546	0.0	C/5782546-5783817	AT1G16905.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function sugar binding|GO:0005529||IEA  go_process biological_process|GO:0008150||ND  product sugar binding  note sugar binding; FUNCTIONS IN: sugar binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480); BEST Arabidopsis thaliana protein match is: curculin-like (mannose-binding) lectin family protein (TAIR:AT1G78860.1); Has 1413 Blast hits to 1382 proteins in 73 species: Archae - 0; Bacteria - 26; Metazoa - 0; Fungi - 0; Plants - 1385; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G16905.1p  transcript_id AT1G16905.1  protein_id AT1G16905.1p  transcript_id AT1G16905.1  
At1g16910	chr1:005785373	0.0	W/5785373-5785867	AT1G16910.1  CDS  gene_syn F17F16.11, LIGHT SENSITIVE HYPOCOTYLS 8, LSH8  gene LSH8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product LSH8 (LIGHT SENSITIVE HYPOCOTYLS 8)  note LIGHT SENSITIVE HYPOCOTYLS 8 (LSH8); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: LSH7 (LIGHT SENSITIVE HYPOCOTYLS 7) (TAIR:AT1G78815.1); Has 185 Blast hits to 185 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16910.1p  transcript_id AT1G16910.1  protein_id AT1G16910.1p  transcript_id AT1G16910.1  
At1g16916	chr1:005786984	0.0	C/5786984-5787047,5786762-5786895	AT1G16916.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16916.1p  transcript_id AT1G16916.1  protein_id AT1G16916.1p  transcript_id AT1G16916.1  
At1g16920	chr1:005788927	0.0	C/5788927-5789147,5787489-5787918	AT1G16920.1  CDS  gene_syn ARABIDOPSIS RAB GTPASE HOMOLOG A1B, ATRABA1B, F17F16.26, RAB11  gene ATRABA1B  function small GTP-binding protein (Rab11)similar to YPT3/RAB11 proteins in yeast and mammals, respectively. YPT3/RAB11 is involved in intracellular protein trafficking.  go_component vacuole|GO:0005773|14760709|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component trans-Golgi network|GO:0005802||NAS  go_process intracellular protein transport|GO:0006886|11756458|TAS  go_function GTP binding|GO:0005525|8843944|IDA  go_function GTP binding|GO:0005525||ISS  product ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B); GTP binding  note ARABIDOPSIS RAB GTPASE HOMOLOG A1B (ATRABA1B); FUNCTIONS IN: GTP binding; INVOLVED IN: intracellular protein transport; LOCATED IN: trans-Golgi network, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Rab11-related (InterPro:IPR015595), Ras small GTPase, Rho type (InterPro:IPR003578), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D); GTP binding (TAIR:AT4G18800.1); Has 22613 Blast hits to 22572 proteins in 625 species: Archae - 19; Bacteria - 112; Metazoa - 12439; Fungi - 2938; Plants - 2070; Viruses - 19; Other Eukaryotes - 5016 (source: NCBI BLink).  protein_id AT1G16920.1p  transcript_id AT1G16920.1  protein_id AT1G16920.1p  transcript_id AT1G16920.1  
At1g16930	chr1:005789987	0.0	W/5789987-5790907,5791013-5791153,5791247-5791534	AT1G16930.1  CDS  gene_syn F17F16.22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80470.1); Has 1475 Blast hits to 1440 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1473; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G16930.1p  transcript_id AT1G16930.1  protein_id AT1G16930.1p  transcript_id AT1G16930.1  
At1g16940	chr1:005791983	0.0	W/5791983-5792825,5792925-5793068,5793174-5793491	AT1G16940.1  CDS  gene_syn F17F16.21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), WD40 repeat (InterPro:IPR001680), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G78750.1); Has 992 Blast hits to 975 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 21; Fungi - 0; Plants - 971; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16940.1p  transcript_id AT1G16940.1  protein_id AT1G16940.1p  transcript_id AT1G16940.1  
At1g16950	chr1:005796083	0.0	W/5796083-5796364	AT1G16950.1  CDS  gene_syn F17F16.23  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stamen; EXPRESSED DURING: 4 anthesis; Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16950.1p  transcript_id AT1G16950.1  protein_id AT1G16950.1p  transcript_id AT1G16950.1  
At1g16960	chr1:005799998	0.0	W/5799998-5800031,5800162-5800284,5800360-5800482,5800560-5800624	AT1G16960.1  CDS  gene_syn F17F16.18  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53400.1); Has 231 Blast hits to 231 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 42; Plants - 47; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G16960.1p  transcript_id AT1G16960.1  protein_id AT1G16960.1p  transcript_id AT1G16960.1  
At1g16970	chr1:005805659	0.0	C/5805659-5805724,5805482-5805559,5805242-5805361,5805035-5805149,5804667-5804772,5804434-5804551,5804224-5804307,5804056-5804114,5803656-5803833,5803348-5803424,5802931-5803078,5802457-5802518,5802288-5802348,5802066-5802158,5801858-5801978,5801670-5801772,5801396-5801558,5801159-5801272	AT1G16970.1  CDS  gene_syn ARABIDOPSIS THALIANA KU70 HOMOLOG, ATKU70, F6I1.2, F6I1_2, KU70, KU70-LIKE PROTEIN  gene KU70  function Ku80 and ku70 form the heterodimer complex Ku, required for proper maintenance of the telomeric C strand. Ku regulates the extension of the telomeric G strand. Interacts with WEX, and this interaction stimulates the WEX exonuclease activity.  go_component nucleus|GO:0005634||IEA  go_component DNA-dependent protein kinase-DNA ligase 4 complex|GO:0005958||IEA  go_process telomere maintenance|GO:0000723|16396834|TAS  go_process DNA repair|GO:0006281|16396834|TAS  go_process response to heat|GO:0009408|18515112|IEP  go_function double-stranded DNA binding|GO:0003690|16396834|IDA  go_function protein binding|GO:0005515|12148535|IPI  go_function protein binding|GO:0005515|16396834|IPI  product KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG); double-stranded DNA binding / protein binding  note ARABIDOPSIS THALIANA KU70 HOMOLOG (KU70); FUNCTIONS IN: protein binding, double-stranded DNA binding; INVOLVED IN: DNA repair, response to heat, telomere maintenance; LOCATED IN: nucleus, DNA-dependent protein kinase-DNA ligase 4 complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ku70/Ku80, N-terminal alpha/beta (InterPro:IPR005161), DNA-binding SAP (InterPro:IPR003034), DNA helicase, ATP-dependent, Ku type (InterPro:IPR006164), Spen Paralogue and Orthologue C-terminal-like (InterPro:IPR016194), Ku70/Ku80 C-terminal arm (InterPro:IPR005160), DNA helicase, ATP-dependent, Ku70 subunit (InterPro:IPR006165); Has 373 Blast hits to 365 proteins in 133 species: Archae - 0; Bacteria - 2; Metazoa - 170; Fungi - 133; Plants - 28; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT1G16970.1p  transcript_id AT1G16970.1  protein_id AT1G16970.1p  transcript_id AT1G16970.1  
At1g16980	chr1:005807311	0.0	W/5807311-5807449,5807526-5807626,5807974-5808359,5808455-5808569,5808659-5808760,5808846-5808996,5809079-5809167,5809268-5809316,5809417-5809517,5809615-5809802,5809888-5810005,5810113-5810271,5810346-5810468,5810553-5810640,5810721-5810851,5810967-5811065,5811162-5811488	AT1G16980.1  CDS  gene_syn ATTPS2, F6I1.1, F6I1_1, TPS2, TREHALOSE -6-PHOSPHATASE SYNTHASE S2  gene ATTPS2  function Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active but no trehalose phosphatase (TPP)-like domain.  go_component cellular_component|GO:0005575||ND  go_process trehalose biosynthetic process|GO:0005992|11701378|ISS  go_function alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity|GO:0003825|11701378|ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product ATTPS2; alpha,alpha-trehalose-phosphate synthase (UDP-forming)/ transferase, transferring glycosyl groups  note ATTPS2; FUNCTIONS IN: transferase activity, transferring glycosyl groups, alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity; INVOLVED IN: trehalose biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Alpha,alpha-trehalose-phosphate synthase (InterPro:IPR012766), Glycosyl transferase, family 20 (InterPro:IPR001830), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: ATTPS3; alpha,alpha-trehalose-phosphate synthase (UDP-forming) (TAIR:AT1G17000.1); Has 2188 Blast hits to 2143 proteins in 595 species: Archae - 31; Bacteria - 1016; Metazoa - 97; Fungi - 469; Plants - 201; Viruses - 0; Other Eukaryotes - 374 (source: NCBI BLink).  protein_id AT1G16980.1p  transcript_id AT1G16980.1  protein_id AT1G16980.1p  transcript_id AT1G16980.1  
At1g17000	chr1:005812728	0.0	W/5812728-5812863,5813008-5813045,5813142-5813527,5813626-5813740,5813834-5813935,5814024-5814174,5814262-5814350,5814436-5814484,5814582-5814682,5814781-5814968,5815070-5815187,5815268-5815425,5815545-5815667,5815755-5815842,5815928-5816058,5816205-5816303,5816384-5816662	AT1G17000.1  CDS  gene_syn ATTPS3, F20D23.30, F20D23_30, TPS3, TREHALOSE -6-PHOSPHATASE SYNTHASE S3  gene ATTPS3  function Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active but no trehalose phosphatase (TPP)-like domain.  go_component cellular_component|GO:0005575||ND  go_process trehalose biosynthetic process|GO:0005992|11701378|ISS  go_process trehalose biosynthetic process|GO:0005992||ISS  go_function alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity|GO:0003825|11701378|ISS  go_function alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity|GO:0003825||ISS  product ATTPS3; alpha,alpha-trehalose-phosphate synthase (UDP-forming)  note ATTPS3; FUNCTIONS IN: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity; INVOLVED IN: trehalose biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 20 (InterPro:IPR001830), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: ATTPS2; alpha,alpha-trehalose-phosphate synthase (UDP-forming)/ transferase, transferring glycosyl groups (TAIR:AT1G16980.1); Has 2185 Blast hits to 2105 proteins in 592 species: Archae - 31; Bacteria - 1009; Metazoa - 97; Fungi - 473; Plants - 227; Viruses - 0; Other Eukaryotes - 348 (source: NCBI BLink).  protein_id AT1G17000.1p  transcript_id AT1G17000.1  protein_id AT1G17000.1p  transcript_id AT1G17000.1  
At1g17010	chr1:005817667	0.0	W/5817667-5817924,5818149-5818396,5818482-5818809,5818932-5819183	AT1G17010.1  CDS  gene_syn F20D23.29, F20D23_29  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process flavonoid biosynthetic process|GO:0009813||ISS  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding; INVOLVED IN: flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: SRG1 (SENESCENCE-RELATED GENE 1); oxidoreductase, acting on diphenols and related substances as donors, oxygen as acceptor / oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (TAIR:AT1G17020.1); Has 5680 Blast hits to 5655 proteins in 670 species: Archae - 0; Bacteria - 682; Metazoa - 105; Fungi - 570; Plants - 3081; Viruses - 0; Other Eukaryotes - 1242 (source: NCBI BLink).  protein_id AT1G17010.1p  transcript_id AT1G17010.1  protein_id AT1G17010.1p  transcript_id AT1G17010.1  
At1g17020	chr1:005820258	0.0	W/5820258-5820512,5820767-5821014,5821094-5821424,5821499-5821741	AT1G17020.1  CDS  gene_syn ATSRG1, F20D23.28, F20D23_28, SENESCENCE-RELATED GENE 1, SRG1  gene SRG1  function Encodes a novel member of the Fe(II)/ascorbate oxidase gene family; senescence-related gene.  go_component cellular_component|GO:0005575||ND  go_process flavonoid biosynthetic process|GO:0009813||ISS  go_process organ senescence|GO:0010260|8883383|IEP  go_function oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor|GO:0016682|8883383|ISS  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product SRG1 (SENESCENCE-RELATED GENE 1); oxidoreductase, acting on diphenols and related substances as donors, oxygen as acceptor / oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors  note SENESCENCE-RELATED GENE 1 (SRG1); FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor; INVOLVED IN: organ senescence, flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: C senescence, 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT1G17010.1); Has 5881 Blast hits to 5857 proteins in 684 species: Archae - 0; Bacteria - 741; Metazoa - 120; Fungi - 625; Plants - 3091; Viruses - 0; Other Eukaryotes - 1304 (source: NCBI BLink).  protein_id AT1G17020.1p  transcript_id AT1G17020.1  protein_id AT1G17020.1p  transcript_id AT1G17020.1  
At1g17030	chr1:005822487	0.0	W/5822487-5822757,5822958-5823544,5823680-5824195,5824290-5824424	AT1G17030.1  CDS  gene_syn F20D23.27, F20D23_27  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G47010.2); Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G17030.1p  transcript_id AT1G17030.1  protein_id AT1G17030.1p  transcript_id AT1G17030.1  
At1g17040	chr1:005825109	0.0	W/5825109-5825267,5825483-5825674,5825761-5825970,5826056-5826208,5826297-5826461,5826571-5826750,5826845-5827113,5827183-5827345,5827442-5827779,5827852-5827929,5828038-5828056	AT1G17040.1  CDS  gene_syn ARABIDOPSIS THALIANA SH2 DOMAIN PROTEIN A, ATSHA, F20D23.26, F20D23_26, SH2 DOMAIN PROTEIN A, SHA, STAT-TYPE LINKER-SH2 DOMAIN FACTOR A, STATLA  gene SHA  function Encodes a protein that contains an SH2 domain. It can pull down a 120-kD tyrosine-phosphorylated protein in vitro. It is predicted to act as a transcription factor.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process signal transduction|GO:0007165||IEA  go_function transcription factor activity|GO:0003700||IEA  go_function signal transducer activity|GO:0004871||IEA  go_function protein binding|GO:0005515||IEA  product SHA (SH2 DOMAIN PROTEIN A); protein binding / signal transducer/ transcription factor  note SH2 DOMAIN PROTEIN A (SHA); FUNCTIONS IN: protein binding, transcription factor activity, signal transducer activity; INVOLVED IN: signal transduction, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SH2 motif (InterPro:IPR000980), STAT transcription factor, core (InterPro:IPR001217), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: SHB (SH2 DOMAIN PROTEIN B); protein binding / signal transducer/ transcription factor (TAIR:AT1G78540.1); Has 268 Blast hits to 264 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 215; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT1G17040.1p  transcript_id AT1G17040.1  protein_id AT1G17040.1p  transcript_id AT1G17040.1  
At1g17050	chr1:005829289	0.0	W/5829289-5829508,5829847-5829971,5830051-5830178,5830274-5830377,5830459-5830586,5830667-5831215	AT1G17050.1  CDS  gene_syn F20D23.25, F20D23_25, SPS2, Solanesyl diphosphate synthase 2  gene SPS2  function Encodes a protein with solanesyl diphosphate synthase activity.  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastid|GO:0009536|15653808|IDA  go_process ubiquinone biosynthetic process|GO:0006744|15653808|IGI  go_function trans-octaprenyltranstransferase activity|GO:0050347|15653808|IGI  product SPS2 (Solanesyl diphosphate synthase 2); trans-octaprenyltranstransferase  note Solanesyl diphosphate synthase 2 (SPS2); FUNCTIONS IN: trans-octaprenyltranstransferase activity; INVOLVED IN: ubiquinone biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Solanesyl diphosphate synthase (InterPro:IPR014120), Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: SPS1 (solanesyl diphosphate synthase 1); trans-octaprenyltranstransferase (TAIR:AT1G78510.1); Has 11562 Blast hits to 11544 proteins in 1668 species: Archae - 213; Bacteria - 4920; Metazoa - 354; Fungi - 438; Plants - 258; Viruses - 0; Other Eukaryotes - 5379 (source: NCBI BLink).  protein_id AT1G17050.1p  transcript_id AT1G17050.1  protein_id AT1G17050.1p  transcript_id AT1G17050.1  
At1g17060	chr1:005834973	0.0	C/5834973-5835255,5834295-5834512,5833267-5833511,5833075-5833184,5832798-5832946,5832282-5832707	AT1G17060.1  CDS  gene_syn CYP72C1, CYTOCHROME P450 72C1, F20D23.24, F20D23_24, SOB7, SUPPRESSOR OF PHYB-4 7  gene CYP72C1  function Encodes a protein with similarity to other cytochrome P450 s and is a homolog of BAS1. Over expression causes a dwarf phenotype resembling brassinolide resistant mutants. Double mutant analysis of sob7/bas1 loss of function mutants suggests these genes have redundant functions in light responsiveness. SOB7 may function in metabolizing brassinolides. Expressed in leaf, root, stem and silique but expression highest in flower and cauline leaves. Dominant overexpressing plants have dwarf phenotype, short siliques/seeds, rounded dark green leaves and short hypocotyls in light and dark. Loss of function alleles result in plants with long hypocotyls.  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process response to light stimulus|GO:0009416|15773851|IGI  go_process unidimensional cell growth|GO:0009826|15773850|IMP  go_process brassinosteroid metabolic process|GO:0016131|15689343|IMP  go_process brassinosteroid metabolic process|GO:0016131|15773851|IMP  go_function oxygen binding|GO:0019825||ISS  product CYP72C1 (CYTOCHROME P450 72C1); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYTOCHROME P450 72C1 (CYP72C1); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: response to light stimulus, unidimensional cell growth, brassinosteroid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group IV (InterPro:IPR002403), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP72A15; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G14690.1); Has 20425 Blast hits to 19968 proteins in 1059 species: Archae - 38; Bacteria - 1613; Metazoa - 10062; Fungi - 3313; Plants - 4662; Viruses - 3; Other Eukaryotes - 734 (source: NCBI BLink).  protein_id AT1G17060.1p  transcript_id AT1G17060.1  protein_id AT1G17060.1p  transcript_id AT1G17060.1  
At1g17070	chr1:005837653	0.0	W/5837653-5840202	AT1G17070.1  CDS  gene_syn F20D23.23, F20D23_23  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component intracellular|GO:0005622||ISS  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product D111/G-patch domain-containing protein  note D111/G-patch domain-containing protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tuftelin interacting protein 11 (InterPro:IPR014809), D111/G-patch (InterPro:IPR000467); BEST Arabidopsis thaliana protein match is: D111/G-patch domain-containing protein (TAIR:AT2G42330.2); Has 979 Blast hits to 958 proteins in 159 species: Archae - 2; Bacteria - 0; Metazoa - 613; Fungi - 98; Plants - 108; Viruses - 1; Other Eukaryotes - 157 (source: NCBI BLink).  protein_id AT1G17070.1p  transcript_id AT1G17070.1  protein_id AT1G17070.1p  transcript_id AT1G17070.1  
At1g17080	chr1:005841329	0.0	C/5841329-5841536,5840833-5840911,5840623-5840740,5840458-5840517	AT1G17080.1  CDS  gene_syn F20D23.22, F20D23_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53560.1); Has 71 Blast hits to 71 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G17080.1p  transcript_id AT1G17080.1  protein_id AT1G17080.1p  transcript_id AT1G17080.1  
At1g17090	chr1:005842464	0.0	C/5842464-5842745	AT1G17090.1  CDS  gene_syn F20D23.31, F20D23_31  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G17090.1p  transcript_id AT1G17090.1  protein_id AT1G17090.1p  transcript_id AT1G17090.1  
At1g17090	chr1:005842464	0.0	C/5842464-5842745	AT1G17090.2  CDS  gene_syn F20D23.31, F20D23_31  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages.  protein_id AT1G17090.2p  transcript_id AT1G17090.2  protein_id AT1G17090.2p  transcript_id AT1G17090.2  
At1g17100	chr1:005844766	0.0	W/5844766-5845034,5845110-5845539	AT1G17100.1  CDS  gene_syn F20D23.21, F20D23_21  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  go_function binding|GO:0005488||ISS  product SOUL heme-binding family protein  note SOUL heme-binding family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SOUL haem-binding protein (InterPro:IPR006917); BEST Arabidopsis thaliana protein match is: SOUL heme-binding family protein (TAIR:AT1G78450.1); Has 1175 Blast hits to 1144 proteins in 91 species: Archae - 10; Bacteria - 83; Metazoa - 242; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 725 (source: NCBI BLink).  protein_id AT1G17100.1p  transcript_id AT1G17100.1  protein_id AT1G17100.1p  transcript_id AT1G17100.1  
At1g17110	chr1:005849441	0.0	C/5849441-5849889,5848906-5849299,5848603-5848780,5848414-5848512,5848212-5848339,5848031-5848119,5847810-5847895,5847557-5847719,5847317-5847440,5847070-5847227,5846905-5846989,5846592-5846804,5846449-5846510,5845816-5846362	AT1G17110.1  CDS  gene_syn F20D23.20, F20D23_20, UBIQUITIN-SPECIFIC PROTEASE 15, UBP15  gene UBP15  function Encodes a ubiquitin-specific protease, and its activity has been confirmed in an in vitro assay. ubp15 mutants have defects in cell proliferation, and the associated processes of leaf, root, stem, flower, and silique development. UBP15 can be found in the nucleus and cytoplasm in transient assays. Though UBP15 is expressed in many tissues, UBP15 transcript levels are higher in rosette leaves and inflorescences than in other parts of the plant.  go_component nucleus|GO:0005634|18485060|IDA  go_component cytoplasm|GO:0005737|18485060|IDA  go_process cell proliferation|GO:0008283|18485060|IMP  go_process flower development|GO:0009908|18485060|IMP  go_process fruit development|GO:0010154|18485060|IMP  go_process protein deubiquitination|GO:0016579|18485060|IDA  go_process root development|GO:0048364|18485060|IMP  go_process leaf development|GO:0048366|18485060|IMP  go_process shoot development|GO:0048367|18485060|IMP  go_function ubiquitin-specific protease activity|GO:0004843|18485060|IDA  go_function ubiquitin-specific protease activity|GO:0004843||ISS  product UBP15 (UBIQUITIN-SPECIFIC PROTEASE 15); ubiquitin-specific protease  note UBIQUITIN-SPECIFIC PROTEASE 15 (UBP15); FUNCTIONS IN: ubiquitin-specific protease activity; INVOLVED IN: in 7 processes; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: UBP17 (UBIQUITIN-SPECIFIC PROTEASE 17); cysteine-type endopeptidase/ ubiquitin thiolesterase/ zinc ion binding (TAIR:AT5G65450.1); Has 6272 Blast hits to 5584 proteins in 194 species: Archae - 0; Bacteria - 42; Metazoa - 3625; Fungi - 807; Plants - 579; Viruses - 7; Other Eukaryotes - 1212 (source: NCBI BLink).  protein_id AT1G17110.1p  transcript_id AT1G17110.1  protein_id AT1G17110.1p  transcript_id AT1G17110.1  
At1g17120	chr1:005851964	0.0	W/5851964-5853736	AT1G17120.1  CDS  gene_syn CAT8, CATIONIC AMINO ACID TRANSPORTER 8, F20D23.19, F20D23_19  gene CAT8  function Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Does not mediate efficient uptake of basic amino acids in yeast or Xenopus systems but can transport neutral and acidic amino acid analogs.  go_component plasma membrane|GO:0005886|17151019|IDA  go_process transport|GO:0006810||IEA  go_process amino acid transport|GO:0006865||IEA  go_component plasma membrane|GO:0005886|15377779|IDA  go_component intracellular membrane-bounded organelle|GO:0043231|15377779|IDA  go_function basic amino acid transmembrane transporter activity|GO:0015174|15377779|IGI  go_function cationic amino acid transmembrane transporter activity|GO:0015326||ISS  product CAT8 (CATIONIC AMINO ACID TRANSPORTER 8); basic amino acid transmembrane transporter/ cationic amino acid transmembrane transporter  note CATIONIC AMINO ACID TRANSPORTER 8 (CAT8); FUNCTIONS IN: basic amino acid transmembrane transporter activity, cationic amino acid transmembrane transporter activity; INVOLVED IN: transport, amino acid transport; LOCATED IN: intracellular membrane-bounded organelle, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cationic amino acid transporter (InterPro:IPR015606), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease-associated region (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: CAT5 (CATIONIC AMINO ACID TRANSPORTER 5); L-glutamate transmembrane transporter/ L-lysine transmembrane transporter/ arginine transmembrane transporter/ cationic amino acid transmembrane transporter (TAIR:AT2G34960.1); Has 17301 Blast hits to 17221 proteins in 1266 species: Archae - 299; Bacteria - 12960; Metazoa - 1598; Fungi - 1250; Plants - 195; Viruses - 0; Other Eukaryotes - 999 (source: NCBI BLink).  protein_id AT1G17120.1p  transcript_id AT1G17120.1  protein_id AT1G17120.1p  transcript_id AT1G17120.1  
At1g17130	chr1:005854264	0.0	W/5854264-5854461,5854865-5855035,5855138-5855272,5855415-5855480,5855731-5855781,5855878-5856003,5856110-5856173,5856267-5856472	AT1G17130.2  CDS  gene_syn F20D23.18, F20D23_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product cell cycle control protein-related  note cell cycle control protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF572 (InterPro:IPR007590); BEST Arabidopsis thaliana protein match is: cell cycle control protein-related (TAIR:AT2G32050.1); Has 1133 Blast hits to 1063 proteins in 189 species: Archae - 3; Bacteria - 33; Metazoa - 413; Fungi - 249; Plants - 84; Viruses - 5; Other Eukaryotes - 346 (source: NCBI BLink).  protein_id AT1G17130.2p  transcript_id AT1G17130.2  protein_id AT1G17130.2p  transcript_id AT1G17130.2  
At1g17130	chr1:005854264	0.0	W/5854264-5854461,5854886-5855035,5855138-5855272,5855415-5855480,5855731-5855781,5855878-5856003,5856110-5856173,5856267-5856472	AT1G17130.1  CDS  gene_syn F20D23.18, F20D23_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product cell cycle control protein-related  note cell cycle control protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF572 (InterPro:IPR007590); BEST Arabidopsis thaliana protein match is: cell cycle control protein-related (TAIR:AT2G32050.1); Has 1122 Blast hits to 1057 proteins in 188 species: Archae - 0; Bacteria - 32; Metazoa - 407; Fungi - 252; Plants - 84; Viruses - 5; Other Eukaryotes - 342 (source: NCBI BLink).  protein_id AT1G17130.1p  transcript_id AT1G17130.1  protein_id AT1G17130.1p  transcript_id AT1G17130.1  
At1g17140	chr1:005857848	0.0	C/5857848-5857861,5856740-5857760	AT1G17140.1  CDS  gene_syn F20D23.32  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product tropomyosin-related  note tropomyosin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78430.1); Has 43510 Blast hits to 22998 proteins in 1377 species: Archae - 572; Bacteria - 4160; Metazoa - 22917; Fungi - 3693; Plants - 1661; Viruses - 138; Other Eukaryotes - 10369 (source: NCBI BLink).  protein_id AT1G17140.1p  transcript_id AT1G17140.1  protein_id AT1G17140.1p  transcript_id AT1G17140.1  
At1g17140	chr1:005857848	0.0	C/5857848-5857861,5856740-5857760	AT1G17140.2  CDS  gene_syn F20D23.32  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product tropomyosin-related  note tropomyosin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78430.1); Has 43510 Blast hits to 22998 proteins in 1377 species: Archae - 572; Bacteria - 4160; Metazoa - 22917; Fungi - 3693; Plants - 1661; Viruses - 138; Other Eukaryotes - 10369 (source: NCBI BLink).  protein_id AT1G17140.2p  transcript_id AT1G17140.2  protein_id AT1G17140.2p  transcript_id AT1G17140.2  
At1g17145	chr1:005862038	0.0	C/5862038-5862241,5861890-5861941,5861756-5861801,5861585-5861666,5861336-5861486,5861173-5861239,5860772-5860838,5860351-5860689	AT1G17145.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G78420.1); Has 150 Blast hits to 150 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 105; Plants - 36; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G17145.1p  transcript_id AT1G17145.1  protein_id AT1G17145.1p  transcript_id AT1G17145.1  
At1g17147	chr1:005863654	0.0	C/5863654-5863950	AT1G17147.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT1G78410.1); Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G17147.1p  transcript_id AT1G17147.1  protein_id AT1G17147.1p  transcript_id AT1G17147.1  
At1g17150	chr1:005865707	0.0	W/5865707-5865856,5866190-5866498,5866658-5867176,5867265-5867495	AT1G17150.1  CDS  gene_syn F20D23.15, F20D23_15  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT2G26620.1); Has 2311 Blast hits to 2303 proteins in 288 species: Archae - 2; Bacteria - 379; Metazoa - 8; Fungi - 979; Plants - 884; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT1G17150.1p  transcript_id AT1G17150.1  protein_id AT1G17150.1p  transcript_id AT1G17150.1  
At1g17160	chr1:005867678	0.0	W/5867678-5868340,5868534-5868719,5868845-5869040,5869121-5869215	AT1G17160.1  CDS  gene_syn F20D23.14, F20D23_14  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_process D-ribose metabolic process|GO:0006014||IEA  go_process D-ribose catabolic process|GO:0019303||IEA  go_function ribokinase activity|GO:0004747||IEA  go_function kinase activity|GO:0016301||ISS  product pfkB-type carbohydrate kinase family protein  note pfkB-type carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process, D-ribose catabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); Has 14507 Blast hits to 14496 proteins in 1450 species: Archae - 247; Bacteria - 9613; Metazoa - 363; Fungi - 201; Plants - 306; Viruses - 0; Other Eukaryotes - 3777 (source: NCBI BLink).  protein_id AT1G17160.1p  transcript_id AT1G17160.1  protein_id AT1G17160.1p  transcript_id AT1G17160.1  
At1g17160	chr1:005867678	0.0	W/5867678-5868340,5868534-5868719,5868845-5869040,5869153-5869175	AT1G17160.2  CDS  gene_syn F20D23.14, F20D23_14  go_component chloroplast|GO:0009507|18431481|IDA  go_process D-ribose metabolic process|GO:0006014||IEA  go_function ribokinase activity|GO:0004747||IEA  go_function kinase activity|GO:0016301||ISS  product pfkB-type carbohydrate kinase family protein  note pfkB-type carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); Has 12078 Blast hits to 12073 proteins in 1389 species: Archae - 206; Bacteria - 8076; Metazoa - 339; Fungi - 164; Plants - 283; Viruses - 0; Other Eukaryotes - 3010 (source: NCBI BLink).  protein_id AT1G17160.2p  transcript_id AT1G17160.2  protein_id AT1G17160.2p  transcript_id AT1G17160.2  
At1g17170	chr1:005869895	0.0	W/5869895-5870209,5870350-5870691	AT1G17170.1  CDS  gene_syn ATGSTU24, Arabidopsis thaliana Glutathione S-transferase (class tau) 24, F20D23.13, F20D23_13, GLUTATHIONE S-TRANSFERASE TAU 24, GST  gene ATGSTU24  function Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).  go_function glutathione binding|GO:0043295|15159623|IDA  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTU24 (GLUTATHIONE S-TRANSFERASE TAU 24); glutathione binding / glutathione transferase  note GLUTATHIONE S-TRANSFERASE TAU 24 (ATGSTU24); FUNCTIONS IN: glutathione transferase activity, glutathione binding; INVOLVED IN: response to cyclopentenone, toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTU25 (GLUTATHIONE S-TRANSFERASE TAU 25); glutathione transferase (TAIR:AT1G17180.1); Has 4210 Blast hits to 4207 proteins in 756 species: Archae - 0; Bacteria - 1783; Metazoa - 554; Fungi - 84; Plants - 1077; Viruses - 0; Other Eukaryotes - 712 (source: NCBI BLink).  protein_id AT1G17170.1p  transcript_id AT1G17170.1  protein_id AT1G17170.1p  transcript_id AT1G17170.1  
At1g17180	chr1:005872208	0.0	W/5872208-5872522,5872608-5872958	AT1G17180.1  CDS  gene_syn ATGSTU25, F20D23.12, F20D23_12, GLUTATHIONE S-TRANSFERASE TAU 25  gene ATGSTU25  function Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTU25 (GLUTATHIONE S-TRANSFERASE TAU 25); glutathione transferase  note GLUTATHIONE S-TRANSFERASE TAU 25 (ATGSTU25); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: response to cyclopentenone, toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTU24 (GLUTATHIONE S-TRANSFERASE TAU 24); glutathione binding / glutathione transferase (TAIR:AT1G17170.1); Has 4213 Blast hits to 4199 proteins in 744 species: Archae - 0; Bacteria - 1883; Metazoa - 501; Fungi - 97; Plants - 1056; Viruses - 0; Other Eukaryotes - 676 (source: NCBI BLink).  protein_id AT1G17180.1p  transcript_id AT1G17180.1  protein_id AT1G17180.1p  transcript_id AT1G17180.1  
At1g17190	chr1:005875452	0.0	W/5875452-5875769,5876031-5876375	AT1G17190.1  CDS  gene_syn ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 26, ATGSTU26, F20D23.11, F20D23_11, GLUTATHIONE S-TRANSFERASE TAU 26, GSTU26  gene ATGSTU26  function Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_process response to cold|GO:0009409|16538523|IEP  go_process response to herbicide|GO:0009635|16538523|IEP  go_function glutathione transferase activity|GO:0004364|16538523|IDA  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTU26 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 26); glutathione transferase  note ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 26 (ATGSTU26); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: response to herbicide, response to cold, toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTU25 (GLUTATHIONE S-TRANSFERASE TAU 25); glutathione transferase (TAIR:AT1G17180.1); Has 3642 Blast hits to 3639 proteins in 732 species: Archae - 0; Bacteria - 1663; Metazoa - 360; Fungi - 77; Plants - 1038; Viruses - 0; Other Eukaryotes - 504 (source: NCBI BLink).  protein_id AT1G17190.1p  transcript_id AT1G17190.1  protein_id AT1G17190.1p  transcript_id AT1G17190.1  
At1g17200	chr1:005878493	0.0	W/5878493-5878710,5879397-5879517,5879596-5879871	AT1G17200.1  CDS  gene_syn F20D23.10, F20D23_10  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane family protein  note integral membrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT3G14380.1); Has 307 Blast hits to 307 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 307; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G17200.1p  transcript_id AT1G17200.1  protein_id AT1G17200.1p  transcript_id AT1G17200.1  
At1g17210	chr1:005884506	0.0	C/5884506-5884657,5884129-5884294,5883510-5883636,5882861-5883195,5881007-5882780,5880666-5880916,5880502-5880573	AT1G17210.1  CDS  gene_syn F20D23.9, F20D23_9  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634|15469496|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component phragmoplast|GO:0009524|15469496|IDA  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; LOCATED IN: cytosol, nucleus, phragmoplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC-like (InterPro:IPR012935), Proteinase inhibitor I32, inhibitor of apoptosis (InterPro:IPR001370); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G48950.1); Has 388 Blast hits to 192 proteins in 68 species: Archae - 2; Bacteria - 7; Metazoa - 100; Fungi - 38; Plants - 41; Viruses - 0; Other Eukaryotes - 200 (source: NCBI BLink).  protein_id AT1G17210.1p  transcript_id AT1G17210.1  protein_id AT1G17210.1p  transcript_id AT1G17210.1  
At1g17220	chr1:005885383	0.0	W/5885383-5886924,5887046-5887078,5887261-5887374,5887544-5887693,5887764-5887862,5887952-5888014,5888297-5888452,5888553-5888618,5888792-5889028,5889131-5889406,5889669-5889857,5890010-5890165	AT1G17220.1  CDS  gene_syn F20D23.8, F20D23_8, FUG1, fu-gaeri1  gene FUG1  function Encodes a chloroplast localized protein with similarity to translation initiation factor 2. Can complement loss of INFB in E.coli suggesting FUG1 does function as a translation initiation factor in vivo. Identified as a suppressor of the leaf variegation mutant var2-6. Suppression is only seen in hypomorphs as complete loss of function alleles are embryo lethal.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast|GO:0009507|17416734|IDA  go_process translational initiation|GO:0006413|17416734|IGI  go_function translation initiation factor activity|GO:0003743|17416734|IGI  go_function translation initiation factor activity|GO:0003743||ISS  product FUG1 (fu-gaeri1); translation initiation factor  note fu-gaeri1 (FUG1); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF-2, N-terminal (InterPro:IPR006847), Initiation factor 2 (InterPro:IPR000178), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation initiation factor 2 related (InterPro:IPR015760), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: translation initiation factor IF-2, mitochondrial, putative (TAIR:AT4G11160.1); Has 43008 Blast hits to 42922 proteins in 3070 species: Archae - 803; Bacteria - 23610; Metazoa - 1793; Fungi - 1492; Plants - 638; Viruses - 3; Other Eukaryotes - 14669 (source: NCBI BLink).  protein_id AT1G17220.1p  transcript_id AT1G17220.1  protein_id AT1G17220.1p  transcript_id AT1G17220.1  
At1g17230	chr1:005891375	0.0	W/5891375-5894288,5894368-5894751,5894848-5894855	AT1G17230.1  CDS  gene_syn F20D23.7, F20D23_7  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function protein kinase activity|GO:0004672||ISS  go_function protein binding|GO:0005515||ISS  product ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT5G63930.1); Has 176088 Blast hits to 101849 proteins in 3330 species: Archae - 85; Bacteria - 13785; Metazoa - 67600; Fungi - 7642; Plants - 63415; Viruses - 431; Other Eukaryotes - 23130 (source: NCBI BLink).  protein_id AT1G17230.1p  transcript_id AT1G17230.1  protein_id AT1G17230.1p  transcript_id AT1G17230.1  
At1g17235	chr1:005895351	0.0	W/5895351-5895710	AT1G17235.1  CDS  gene_syn ROTUNDIFOLIA LIKE 11, RTFL11  gene RTFL11  function This gene is predicted to encode a small protein with a DVL domain found in the DVL / RTFL protein family. Over-expression analyses using truncated versions of a related family member, ROT4, suggest that the DVL / RTF domain is involved in regulating cell proliferation.  go_component cellular_component|GO:0005575||ND  go_process regulation of cell proliferation|GO:0042127|15125775|ISS  go_function molecular_function|GO:0003674||ND  product RTFL11 (ROTUNDIFOLIA LIKE 11)  note ROTUNDIFOLIA LIKE 11 (RTFL11); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of cell proliferation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G17235.1p  transcript_id AT1G17235.1  protein_id AT1G17235.1p  transcript_id AT1G17235.1  
At1g17240	chr1:005896528	0.0	C/5896528-5898717	AT1G17240.1  CDS  gene_syn AtRLP2, F20D23.6, F20D23_6, Receptor Like Protein 2  gene AtRLP2  go_process signal transduction|GO:0007165|11751054|IC  go_function protein kinase activity|GO:0004672||ISS  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product AtRLP2 (Receptor Like Protein 2); protein binding / protein kinase  note Receptor Like Protein 2 (AtRLP2); FUNCTIONS IN: protein binding, protein kinase activity; INVOLVED IN: signal transduction; EXPRESSED IN: stem, sperm cell, root, stamen, leaf; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT1G72300.1); Has 57036 Blast hits to 17883 proteins in 779 species: Archae - 38; Bacteria - 4104; Metazoa - 16790; Fungi - 784; Plants - 30572; Viruses - 2; Other Eukaryotes - 4746 (source: NCBI BLink).  protein_id AT1G17240.1p  transcript_id AT1G17240.1  protein_id AT1G17240.1p  transcript_id AT1G17240.1  
At1g17255	chr1:005899994	0.0	W/5899994-5903619	AT1G17255.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G17250  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G17255.1  
At1g17250	chr1:005901169	0.0	C/5901169-5903439	AT1G17250.1  CDS  gene_syn AtRLP3, F20D23.5, F20D23_5, Receptor Like Protein 3  gene AtRLP3  go_process signal transduction|GO:0007165|11751054|IC  go_function protein kinase activity|GO:0004672||ISS  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product AtRLP3 (Receptor Like Protein 3); protein binding / protein kinase  note Receptor Like Protein 3 (AtRLP3); FUNCTIONS IN: protein binding, protein kinase activity; INVOLVED IN: signal transduction; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP2 (Receptor Like Protein 2); protein binding / protein kinase (TAIR:AT1G17240.1); Has 50877 Blast hits to 16307 proteins in 715 species: Archae - 34; Bacteria - 2660; Metazoa - 13924; Fungi - 543; Plants - 29554; Viruses - 2; Other Eukaryotes - 4160 (source: NCBI BLink).  protein_id AT1G17250.1p  transcript_id AT1G17250.1  protein_id AT1G17250.1p  transcript_id AT1G17250.1  
At1g17260	chr1:005904058	0.0	W/5904058-5904123,5904211-5904330,5904418-5904516,5904606-5904743,5904840-5904974,5905065-5905244,5905343-5905549,5905651-5905770,5905892-5906011,5906100-5906222,5906336-5906440,5906566-5906710,5906825-5906986,5907076-5907314,5907477-5907509,5907601-5907682,5907766-5907926,5908009-5908182,5908277-5908459,5908560-5908714,5908802-5908898	AT1G17260.1  CDS  gene_syn AHA10, Autoinhibited H(+)-ATPase isoform 10, F20D23.4, F20D23_4  gene AHA10  function belongs to H+-APTase gene family, involved in proanthocyanidin biosynthesis, disturbs the vacuolar biogenesis and acidification process  go_component chloroplast|GO:0009507|15028209|IDA  go_process vacuole organization|GO:0007033|15695592|IMP  go_process vacuolar acidification|GO:0007035|15695592|IMP  go_process proanthocyanidin biosynthetic process|GO:0010023|15695592|IMP  go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662|7969026|ISS  go_function ATPase activity|GO:0016887||ISS  go_function cation-transporting ATPase activity|GO:0019829|7969026|ISS  product AHA10 (Autoinhibited H(+)-ATPase isoform 10); ATPase/ ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism / cation-transporting ATPase  note Autoinhibited H(+)-ATPase isoform 10 (AHA10); FUNCTIONS IN: ATPase activity, cation-transporting ATPase activity, ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: vacuole organization, proanthocyanidin biosynthetic process, vacuolar acidification; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type, plasma-membrane proton-efflux (InterPro:IPR006534), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: AHA4; ATPase/ hydrogen-exporting ATPase, phosphorylative mechanism (TAIR:AT3G47950.1); Has 21164 Blast hits to 18613 proteins in 1822 species: Archae - 419; Bacteria - 11734; Metazoa - 3272; Fungi - 1642; Plants - 1078; Viruses - 3; Other Eukaryotes - 3016 (source: NCBI BLink).  protein_id AT1G17260.1p  transcript_id AT1G17260.1  protein_id AT1G17260.1p  transcript_id AT1G17260.1  
At1g17270	chr1:005910357	0.0	C/5910357-5911624,5909812-5910061,5909443-5909619	AT1G17270.1  CDS  gene_syn F20D23.3, F20D23_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G50420.1); Has 68 Blast hits to 68 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G17270.1p  transcript_id AT1G17270.1  protein_id AT1G17270.1p  transcript_id AT1G17270.1  
At1g17275	chr1:005912053	0.0	W/5912053-5915313	AT1G17275.1  mRNA_TE_gene  pseudo  gene_syn F20D23.2, F20D23_2  note Transposable element gene, Mutator-like transposase family, has a 5.8e-31 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At1g17277	chr1:005915644	0.0	C/5915644-5916212	AT1G17277.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G78355.1); similar to GRF zinc finger containing protein [Brassica oleracea] (GB:ABD64950.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Zinc finger, GRF-type; (InterPro:IPR010666)  
At1g17280	chr1:005919106	0.0	C/5919106-5919162,5918848-5918902,5918396-5918434,5918250-5918313,5918088-5918149,5917964-5918003,5917859-5917886,5917603-5917694,5917146-5917422	AT1G17280.1  CDS  gene_syn F20D23.1, F20D23_1, UBC34, ubiquitin-conjugating enzyme 34  gene UBC34  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC34 (ubiquitin-conjugating enzyme 34); ubiquitin-protein ligase  note ubiquitin-conjugating enzyme 34 (UBC34); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC33 (ubiquitin-conjugating enzyme 33); ubiquitin-protein ligase (TAIR:AT5G50430.2); Has 5548 Blast hits to 5545 proteins in 288 species: Archae - 0; Bacteria - 0; Metazoa - 2617; Fungi - 1060; Plants - 889; Viruses - 16; Other Eukaryotes - 966 (source: NCBI BLink).  protein_id AT1G17280.1p  transcript_id AT1G17280.1  protein_id AT1G17280.1p  transcript_id AT1G17280.1  
At1g17280	chr1:005919106	0.0	C/5919106-5919162,5918848-5918902,5918396-5918434,5918250-5918313,5918088-5918149,5917964-5918003,5917859-5917886,5917603-5917694,5917146-5917422	AT1G17280.2  CDS  gene_syn F20D23.1, F20D23_1, UBC34, ubiquitin-conjugating enzyme 34  gene UBC34  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC34 (ubiquitin-conjugating enzyme 34); ubiquitin-protein ligase  note ubiquitin-conjugating enzyme 34 (UBC34); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC33 (ubiquitin-conjugating enzyme 33); ubiquitin-protein ligase (TAIR:AT5G50430.2); Has 5548 Blast hits to 5545 proteins in 288 species: Archae - 0; Bacteria - 0; Metazoa - 2617; Fungi - 1060; Plants - 889; Viruses - 16; Other Eukaryotes - 966 (source: NCBI BLink).  protein_id AT1G17280.2p  transcript_id AT1G17280.2  protein_id AT1G17280.2p  transcript_id AT1G17280.2  
At1g17285	chr1:005920895	0.0	W/5920895-5921112,5921218-5921287	AT1G17285.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17300.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G17285.1p  transcript_id AT1G17285.1  protein_id AT1G17285.1p  transcript_id AT1G17285.1  
At1g17290	chr1:005922771	0.0	W/5922771-5922992,5923592-5923642,5923721-5923771,5923860-5923925,5924003-5924064,5924151-5924229,5924307-5924411,5924500-5924610,5924739-5924876,5924972-5925167,5925261-5925415,5925526-5925600,5925681-5925884,5925977-5926093	AT1G17290.1  CDS  gene_syn ALANINE AMINOTRANSFERAS, AlaAT1, T13M22.3, T13M22_3  gene AlaAT1  function Encodes for alanine aminotransferase (ALAAT1), involved in alanine catabolism during plants recovery from hypoxia  go_component mitochondrion|GO:0005739|17137349|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process response to cadmium ion|GO:0046686|17075075|IEP  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process response to hypoxia|GO:0001666|17319845|IEP  go_process L-alanine catabolic process, by transamination|GO:0019481|17319845|IMP  go_function L-alanine:2-oxoglutarate aminotransferase activity|GO:0004021|17319845|IDA  go_function L-alanine:2-oxoglutarate aminotransferase activity|GO:0004021||ISS  product AlaAT1 (ALANINE AMINOTRANSFERAS); ATP binding / L-alanine:2-oxoglutarate aminotransferase  note ALANINE AMINOTRANSFERAS (AlaAT1); FUNCTIONS IN: L-alanine:2-oxoglutarate aminotransferase activity, ATP binding; INVOLVED IN: response to cadmium ion, response to hypoxia, L-alanine catabolic process, by transamination; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I and II (InterPro:IPR004839), 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: ALAAT2 (ALANINE AMINOTRANSFERASE 2); ATP binding / L-alanine:2-oxoglutarate aminotransferase (TAIR:AT1G72330.1); Has 17405 Blast hits to 17399 proteins in 1647 species: Archae - 469; Bacteria - 9945; Metazoa - 539; Fungi - 426; Plants - 913; Viruses - 0; Other Eukaryotes - 5113 (source: NCBI BLink).  protein_id AT1G17290.1p  transcript_id AT1G17290.1  protein_id AT1G17290.1p  transcript_id AT1G17290.1  
At1g17300	chr1:005926994	0.0	W/5926994-5927290,5927387-5927440	AT1G17300.1  CDS  gene_syn T13M22.4, T13M22_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17285.1); Has 14 Blast hits to 14 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G17300.1p  transcript_id AT1G17300.1  protein_id AT1G17300.1p  transcript_id AT1G17300.1  
At1g17310	chr1:005928014	0.0	C/5928014-5928667	AT1G17310.1  CDS  gene_syn T13M22.2, T13M22_2  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product MADS-box protein (AGL100)  note MADS-box protein (AGL100); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: sperm cell, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: MADS-box protein (AGL60) (TAIR:AT1G72350.1); Has 3856 Blast hits to 3856 proteins in 511 species: Archae - 0; Bacteria - 0; Metazoa - 552; Fungi - 206; Plants - 3050; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT1G17310.1p  transcript_id AT1G17310.1  protein_id AT1G17310.1p  transcript_id AT1G17310.1  
At1g17330	chr1:005929966	0.0	W/5929966-5930127,5930281-5930311,5930404-5930422,5930803-5930900,5931027-5931125,5931257-5931429,5931509-5931595	AT1G17330.1  CDS  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product metal-dependent phosphohydrolase HD domain-containing protein-related  note metal-dependent phosphohydrolase HD domain-containing protein-related; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD region, subdomain (InterPro:IPR006674), Metal-dependent phosphohydrolase, HD region (InterPro:IPR003607); Has 805 Blast hits to 805 proteins in 389 species: Archae - 41; Bacteria - 627; Metazoa - 0; Fungi - 56; Plants - 19; Viruses - 3; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT1G17330.1p  transcript_id AT1G17330.1  protein_id AT1G17330.1p  transcript_id AT1G17330.1  
At1g17340	chr1:005934129	0.0	W/5934129-5934215,5934694-5934898,5934994-5935159,5935261-5935483,5935580-5935656,5935838-5936025,5936115-5936212,5936308-5936447,5936529-5936657,5936778-5937081,5937179-5937300,5937389-5937499,5937591-5937758,5937849-5938019,5938121-5938205,5938308-5938391	AT1G17340.1  CDS  gene_syn F28G4.21, F28G4_21  go_component cellular_component|GO:0005575||ND  go_function phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|GO:0004439||ISS  product phosphoinositide phosphatase family protein  note phosphoinositide phosphatase family protein; FUNCTIONS IN: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Synaptojanin, N-terminal (InterPro:IPR002013); BEST Arabidopsis thaliana protein match is: phosphoinositide phosphatase family protein (TAIR:AT3G14205.1); Has 1218 Blast hits to 1174 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 466; Fungi - 372; Plants - 143; Viruses - 0; Other Eukaryotes - 237 (source: NCBI BLink).  protein_id AT1G17340.1p  transcript_id AT1G17340.1  protein_id AT1G17340.1p  transcript_id AT1G17340.1  
At1g17345	chr1:005940525	0.0	W/5940525-5940920	AT1G17345.1  CDS  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive protein-related  note auxin-responsive protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein-related (TAIR:AT1G72430.1); Has 60 Blast hits to 60 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G17345.1p  transcript_id AT1G17345.1  protein_id AT1G17345.1p  transcript_id AT1G17345.1  
At1g17350	chr1:005942391	0.0	W/5942391-5942442,5942736-5942849,5943084-5943140,5943328-5943419,5943609-5943689,5943781-5943879,5944084-5944272	AT1G17350.1  CDS  gene_syn F28G4.20, F28G4_20  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product auxin-induced-related / indole-3-acetic acid induced-related  note auxin-induced-related / indole-3-acetic acid induced-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 (InterPro:IPR013857); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72420.1); Has 417 Blast hits to 417 proteins in 147 species: Archae - 0; Bacteria - 106; Metazoa - 95; Fungi - 57; Plants - 48; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).  protein_id AT1G17350.1p  transcript_id AT1G17350.1  protein_id AT1G17350.1p  transcript_id AT1G17350.1  
At1g17350	chr1:005942391	0.0	W/5942391-5942442,5942736-5942849,5943084-5943140,5943328-5943419,5943609-5943689,5943781-5943903,5944084-5944233,5944289-5944330	AT1G17350.2  CDS  gene_syn F28G4.20, F28G4_20  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product auxin-induced-related / indole-3-acetic acid induced-related  note auxin-induced-related / indole-3-acetic acid induced-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 (InterPro:IPR013857); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72420.1).  protein_id AT1G17350.2p  transcript_id AT1G17350.2  protein_id AT1G17350.2p  transcript_id AT1G17350.2  
At1g17360	chr1:005947441	0.0	W/5947441-5947499,5947582-5947767,5947856-5947956,5948053-5948080,5948166-5948318,5948398-5949215,5949366-5949910,5950009-5951176,5951272-5951399	AT1G17360.1  CDS  gene_syn F28G4.18, F28G4_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT1G72410.1); Has 8834 Blast hits to 6495 proteins in 406 species: Archae - 8; Bacteria - 626; Metazoa - 3389; Fungi - 793; Plants - 257; Viruses - 52; Other Eukaryotes - 3709 (source: NCBI BLink).  protein_id AT1G17360.1p  transcript_id AT1G17360.1  protein_id AT1G17360.1p  transcript_id AT1G17360.1  
At1g17370	chr1:005954721	0.0	C/5954721-5954825,5954218-5954279,5953740-5953842,5953547-5953623,5953385-5953446,5953203-5953290,5953035-5953110,5952912-5952942,5952679-5952798,5952475-5952560,5952208-5952384,5951842-5952114	AT1G17370.1  CDS  gene_syn F28G4.17, UBP1B, oligouridylate binding protein 1B  gene UBP1B  go_function mRNA 3 -UTR binding|GO:0003730|10747031|ISS  product UBP1B (oligouridylate binding protein 1B); mRNA 3 -UTR binding  note oligouridylate binding protein 1B (UBP1B); FUNCTIONS IN: mRNA 3 -UTR binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: oligouridylate-binding protein, putative (TAIR:AT3G14100.1); Has 17907 Blast hits to 12570 proteins in 534 species: Archae - 0; Bacteria - 870; Metazoa - 10427; Fungi - 2031; Plants - 2891; Viruses - 0; Other Eukaryotes - 1688 (source: NCBI BLink).  protein_id AT1G17370.1p  transcript_id AT1G17370.1  protein_id AT1G17370.1p  transcript_id AT1G17370.1  
At1g17370	chr1:005954721	0.0	C/5954721-5954825,5954218-5954279,5953740-5953842,5953547-5953623,5953385-5953446,5953203-5953290,5953035-5953110,5952912-5952942,5952686-5952798,5952475-5952558,5952208-5952384,5951842-5952114	AT1G17370.2  CDS  gene_syn F28G4.17, UBP1B, oligouridylate binding protein 1B  gene UBP1B  go_function mRNA 3 -UTR binding|GO:0003730|10747031|ISS  product UBP1B (oligouridylate binding protein 1B); mRNA 3 -UTR binding  note oligouridylate binding protein 1B (UBP1B); FUNCTIONS IN: mRNA 3 -UTR binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: oligouridylate-binding protein, putative (TAIR:AT3G14100.1); Has 2596 Blast hits to 1752 proteins in 87 species: Archae - 0; Bacteria - 102; Metazoa - 1961; Fungi - 223; Plants - 209; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT1G17370.2p  transcript_id AT1G17370.2  protein_id AT1G17370.2p  transcript_id AT1G17370.2  
At1g17380	chr1:005956893	0.0	C/5956893-5957070,5956497-5956587,5956053-5956376,5955654-5955885	AT1G17380.1  CDS  gene_syn F28G4.16, JASMONATE-ZIM-DOMAIN PROTEIN 5, JAZ5, TIFY11A  gene JAZ5  go_component cellular_component|GO:0005575||ND  go_process response to jasmonic acid stimulus|GO:0009753|17637677|IEP  go_function molecular_function|GO:0003674||ND  product JAZ5 (JASMONATE-ZIM-DOMAIN PROTEIN 5)  note JASMONATE-ZIM-DOMAIN PROTEIN 5 (JAZ5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to jasmonic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6) (TAIR:AT1G72450.1); Has 172 Blast hits to 167 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 172; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G17380.1p  transcript_id AT1G17380.1  protein_id AT1G17380.1p  transcript_id AT1G17380.1  
At1g17390	chr1:005958628	0.0	C/5958628-5959651	AT1G17390.1  mRNA_TE_gene  pseudo  gene_syn F28G4.15  note Transposable element gene, similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G36905.1); similar to Ribonuclease H [Medicago truncatula] (GB:ABD28505.1); contains InterPro domain Ribonuclease H; (InterPro:IPR002156); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)  
At1g17400	chr1:005962240	0.0	C/5962240-5962245,5962080-5962149,5961278-5961888,5961020-5961200,5960920-5960939	AT1G17400.1  CDS  gene_syn F28G4.14, F28G4_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72490.1); Has 140 Blast hits to 136 proteins in 31 species: Archae - 0; Bacteria - 10; Metazoa - 13; Fungi - 1; Plants - 39; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT1G17400.1p  transcript_id AT1G17400.1  protein_id AT1G17400.1p  transcript_id AT1G17400.1  
At1g17410	chr1:005969713	0.0	C/5969713-5969780,5969263-5969487,5969058-5969165,5968777-5968886,5968627-5968661	AT1G17410.1  CDS  gene_syn F28G4.12, F28G4_12  go_component endomembrane system|GO:0012505||IEA  go_process GTP biosynthetic process|GO:0006183||IEA  go_process UTP biosynthetic process|GO:0006228||IEA  go_process CTP biosynthetic process|GO:0006241||IEA  go_process nucleotide metabolic process|GO:0009117||IEA  go_process pyrimidine ribonucleotide metabolic process|GO:0009218||IEA  go_process pyrimidine deoxyribonucleoside interconversion|GO:0019690||IEA  go_function nucleoside diphosphate kinase activity|GO:0004550||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside diphosphate kinase activity|GO:0004550||ISS  go_function ATP binding|GO:0005524||ISS  product nucleoside diphosphate kinase family protein  note nucleoside diphosphate kinase family protein; FUNCTIONS IN: nucleoside diphosphate kinase activity, ATP binding; INVOLVED IN: in 6 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside diphosphate kinase, core (InterPro:IPR001564); BEST Arabidopsis thaliana protein match is: NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2); ATP binding / nucleoside diphosphate kinase/ protein binding (TAIR:AT5G63310.1); Has 6413 Blast hits to 6233 proteins in 1540 species: Archae - 204; Bacteria - 2584; Metazoa - 955; Fungi - 117; Plants - 246; Viruses - 17; Other Eukaryotes - 2290 (source: NCBI BLink).  protein_id AT1G17410.1p  transcript_id AT1G17410.1  protein_id AT1G17410.1p  transcript_id AT1G17410.1  
At1g17420	chr1:005977512	0.0	W/5977512-5977902,5978013-5978293,5978498-5978735,5978860-5979189,5979571-5979764,5979856-5980157,5980250-5980516,5980628-5981384	AT1G17420.1  CDS  gene_syn F28G4.10, LOX3  gene LOX3  function Lipoxygenase  go_component chloroplast|GO:0009507||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function lipoxygenase activity|GO:0016165||IEA  go_function oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|GO:0016702||IEA  go_function metal ion binding|GO:0046872||IEA  go_process defense response|GO:0006952|9232884|TAS  go_process response to wounding|GO:0009611|9232884|TAS  go_process response to fungus|GO:0009620|19220788|IEP  go_process jasmonic acid biosynthetic process|GO:0009695|8702864|TAS  go_process growth|GO:0040007|9232884|TAS  product LOX3; electron carrier/ iron ion binding / lipoxygenase/ metal ion binding / oxidoreductase, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen  note LOX3; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding; INVOLVED IN: growth, response to fungus, jasmonic acid biosynthetic process, response to wounding, defense response; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Lipoxygenase, C-terminal (InterPro:IPR013819), Lipoxygenase (InterPro:IPR000907), Lipoxygenase, plant (InterPro:IPR001246); BEST Arabidopsis thaliana protein match is: lipoxygenase, putative (TAIR:AT1G72520.1); Has 1120 Blast hits to 1107 proteins in 148 species: Archae - 0; Bacteria - 68; Metazoa - 487; Fungi - 38; Plants - 511; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G17420.1p  transcript_id AT1G17420.1  protein_id AT1G17420.1p  transcript_id AT1G17420.1  
At1g17430	chr1:005982310	0.0	W/5982310-5983035,5983155-5983247,5983553-5983620,5983808-5983919	AT1G17430.1  CDS  gene_syn F28G4.9  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT1G72620.1); Has 3179 Blast hits to 3177 proteins in 659 species: Archae - 36; Bacteria - 2008; Metazoa - 134; Fungi - 8; Plants - 175; Viruses - 0; Other Eukaryotes - 818 (source: NCBI BLink).  protein_id AT1G17430.1p  transcript_id AT1G17430.1  protein_id AT1G17430.1p  transcript_id AT1G17430.1  
At1g17440	chr1:005986875	0.0	C/5986875-5987663,5986447-5986659,5985354-5985968,5985191-5985265,5985016-5985094,5984855-5984916,5984680-5984715,5984407-5984589	AT1G17440.1  CDS  gene_syn EER4, ENHANCED ETHYLENE RESPONSE 4, F1L3.13, TAF12B, TBP-ASSOCIATED FACTOR 12B  gene EER4  function Encodes one of two Arabidopsis proteins with similarity to the TBP-associated factor TAF12. The gene product is an EIN3-interacting TFIID transcription factor required for proper ethylene response, including ERF1 induction. Loss of function mutants show enhanced response to ethylene. Located in nucleus and expressed throughout the plant. Required for ERF1 expression.  go_function DNA binding|GO:0003677||IEA  go_function transcription initiation factor activity|GO:0016986||IEA  go_component nucleus|GO:0005634|17526916|IDA  go_component transcription factor TFIID complex|GO:0005669||ISS  go_process transcription initiation|GO:0006352||ISS  go_process jasmonic acid mediated signaling pathway|GO:0009867|17526916|IMP  go_process regulation of ethylene mediated signaling pathway|GO:0010104|17526916|IMP  go_function transcription initiation factor activity|GO:0016986||ISS  product EER4 (ENHANCED ETHYLENE RESPONSE 4); DNA binding / transcription initiation factor  note ENHANCED ETHYLENE RESPONSE 4 (EER4); FUNCTIONS IN: transcription initiation factor activity, DNA binding; INVOLVED IN: regulation of ethylene mediated signaling pathway, jasmonic acid mediated signaling pathway, transcription initiation; LOCATED IN: nucleus, transcription factor TFIID complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID (InterPro:IPR003228), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: TAF12 (TBP-ASSOCIATED FACTOR 12); DNA binding / transcription initiation factor (TAIR:AT3G10070.1); Has 78314 Blast hits to 32955 proteins in 1134 species: Archae - 36; Bacteria - 3910; Metazoa - 30427; Fungi - 8230; Plants - 5691; Viruses - 326; Other Eukaryotes - 29694 (source: NCBI BLink).  protein_id AT1G17440.1p  transcript_id AT1G17440.1  protein_id AT1G17440.1p  transcript_id AT1G17440.1  
At1g17440	chr1:005986875	0.0	C/5986875-5987663,5986447-5986659,5985354-5985968,5985191-5985265,5985016-5985094,5984855-5984916,5984680-5984715,5984407-5984589	AT1G17440.2  CDS  gene_syn EER4, ENHANCED ETHYLENE RESPONSE 4, F1L3.13, TAF12B, TBP-ASSOCIATED FACTOR 12B  gene EER4  function Encodes one of two Arabidopsis proteins with similarity to the TBP-associated factor TAF12. The gene product is an EIN3-interacting TFIID transcription factor required for proper ethylene response, including ERF1 induction. Loss of function mutants show enhanced response to ethylene. Located in nucleus and expressed throughout the plant. Required for ERF1 expression.  go_function DNA binding|GO:0003677||IEA  go_function transcription initiation factor activity|GO:0016986||IEA  go_component nucleus|GO:0005634|17526916|IDA  go_component transcription factor TFIID complex|GO:0005669||ISS  go_process transcription initiation|GO:0006352||ISS  go_process jasmonic acid mediated signaling pathway|GO:0009867|17526916|IMP  go_process regulation of ethylene mediated signaling pathway|GO:0010104|17526916|IMP  go_function transcription initiation factor activity|GO:0016986||ISS  product EER4 (ENHANCED ETHYLENE RESPONSE 4); DNA binding / transcription initiation factor  note ENHANCED ETHYLENE RESPONSE 4 (EER4); FUNCTIONS IN: DNA binding, transcription initiation factor activity; INVOLVED IN: regulation of ethylene mediated signaling pathway, jasmonic acid mediated signaling pathway, transcription initiation; LOCATED IN: nucleus, transcription factor TFIID complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID (InterPro:IPR003228), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: TAF12 (TBP-ASSOCIATED FACTOR 12); DNA binding / transcription initiation factor (TAIR:AT3G10070.1); Has 78314 Blast hits to 32955 proteins in 1134 species: Archae - 36; Bacteria - 3910; Metazoa - 30427; Fungi - 8230; Plants - 5691; Viruses - 326; Other Eukaryotes - 29694 (source: NCBI BLink).  protein_id AT1G17440.2p  transcript_id AT1G17440.2  protein_id AT1G17440.2p  transcript_id AT1G17440.2  
At1g17450	chr1:005996338	0.0	C/5996338-5996693,5995870-5996254,5995716-5995790,5995529-5995591,5995213-5995398,5994488-5995033,5993966-5994388,5993654-5993875,5993267-5993539,5992918-5993019,5992724-5992756,5992250-5992632,5991456-5991924,5990940-5991257,5989819-5990569,5989665-5989723,5989043-5989507,5988912-5988950,5988643-5988756	AT1G17450.1  CDS  gene_syn F28G4.7  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; CONTAINS InterPro DOMAIN/s: B-block binding subunit of TFIIIC (InterPro:IPR007309); BEST Arabidopsis thaliana protein match is: transcription factor-related (TAIR:AT1G59453.1); Has 39 Blast hits to 33 proteins in 8 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G17450.1p  transcript_id AT1G17450.1  protein_id AT1G17450.1p  transcript_id AT1G17450.1  
At1g17455	chr1:005997932	0.0	W/5997932-5998276	AT1G17455.1  CDS  gene_syn ELF4-L4, ELF4-Like 4  gene ELF4-L4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ELF4-L4 (ELF4-Like 4)  note ELF4-Like 4 (ELF4-L4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1313 (InterPro:IPR009741); BEST Arabidopsis thaliana protein match is: ELF4-L2 (ELF4-Like 2) (TAIR:AT1G72630.1); Has 69 Blast hits to 68 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G17455.1p  transcript_id AT1G17455.1  protein_id AT1G17455.1p  transcript_id AT1G17455.1  
At1g17455	chr1:005997932	0.0	W/5997932-5998276	AT1G17455.2  CDS  gene_syn ELF4-L4, ELF4-Like 4  gene ELF4-L4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ELF4-L4 (ELF4-Like 4)  note ELF4-Like 4 (ELF4-L4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1313 (InterPro:IPR009741); BEST Arabidopsis thaliana protein match is: ELF4-L2 (ELF4-Like 2) (TAIR:AT1G72630.1).  protein_id AT1G17455.2p  transcript_id AT1G17455.2  protein_id AT1G17455.2p  transcript_id AT1G17455.2  
At1g17460	chr1:005999519	0.0	W/5999519-5999638,5999777-5999951,6000287-6000345,6000469-6001320,6001534-6001668,6001909-6002184,6002266-6002310,6002394-6002546	AT1G17460.1  CDS  gene_syn F28G4.5, TRF-LIKE 3, TRFL3  gene TRFL3  function Arabidopsis thaliana myb family transcription factor (At1g17460)  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product TRFL3 (TRF-LIKE 3); DNA binding / transcription factor  note TRF-LIKE 3 (TRFL3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cytosolic ribosome; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRFL6 (TRF-LIKE 6); DNA binding / transcription factor (TAIR:AT1G72650.2); Has 518 Blast hits to 514 proteins in 86 species: Archae - 0; Bacteria - 2; Metazoa - 153; Fungi - 34; Plants - 270; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT1G17460.1p  transcript_id AT1G17460.1  protein_id AT1G17460.1p  transcript_id AT1G17460.1  
At1g17470	chr1:006003442	0.0	W/6003442-6003511,6003747-6003814,6004121-6004197,6004329-6004509,6004634-6004690,6004786-6004860,6005014-6005133,6005262-6005432,6005577-6005690,6005776-6005946,6006060-6006155	AT1G17470.1  CDS  gene_syn ARABIDOPSIS THALIANA DEVELOPMENTALLY REGULATED G-PROTEIN 1, ATDRG, ATDRG1, F28G4.4  gene ATDRG1  function Encodes a member of the DRG (developmentally regulated G-protein) family expressed throughout the plant, with highest expression in actively growing tissues.  go_component cytoplasmic membrane-bounded vesicle|GO:0016023|10380799|IDA  go_function GTPase activity|GO:0003924|10380799|ISS  go_function GTP binding|GO:0005525||ISS  product ATDRG1 (ARABIDOPSIS THALIANA DEVELOPMENTALLY REGULATED G-PROTEIN 1); GTP binding / GTPase  note ARABIDOPSIS THALIANA DEVELOPMENTALLY REGULATED G-PROTEIN 1 (ATDRG1); FUNCTIONS IN: GTP binding, GTPase activity; LOCATED IN: cytoplasmic membrane-bounded vesicle; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), TGS (InterPro:IPR004095), GTP1/OBG (InterPro:IPR006073), GTP1/OBG, conserved site (InterPro:IPR006074), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: developmentally regulated GTP-binding protein, putative (TAIR:AT1G72660.3); Has 12682 Blast hits to 12667 proteins in 1595 species: Archae - 467; Bacteria - 6624; Metazoa - 742; Fungi - 378; Plants - 182; Viruses - 0; Other Eukaryotes - 4289 (source: NCBI BLink).  protein_id AT1G17470.1p  transcript_id AT1G17470.1  protein_id AT1G17470.1p  transcript_id AT1G17470.1  
At1g17470	chr1:006003442	0.0	W/6003442-6003511,6003747-6003814,6004121-6004197,6004329-6004509,6004634-6004690,6004786-6004860,6005014-6005133,6005262-6005432,6005577-6005690,6005776-6005946,6006060-6006155	AT1G17470.2  CDS  gene_syn ARABIDOPSIS THALIANA DEVELOPMENTALLY REGULATED G-PROTEIN 1, ATDRG, ATDRG1, F28G4.4  gene ATDRG1  function Encodes a member of the DRG (developmentally regulated G-protein) family expressed throughout the plant, with highest expression in actively growing tissues.  go_component cytoplasmic membrane-bounded vesicle|GO:0016023|10380799|IDA  go_function GTPase activity|GO:0003924|10380799|ISS  go_function GTP binding|GO:0005525||ISS  product ATDRG1 (ARABIDOPSIS THALIANA DEVELOPMENTALLY REGULATED G-PROTEIN 1); GTP binding / GTPase  note ARABIDOPSIS THALIANA DEVELOPMENTALLY REGULATED G-PROTEIN 1 (ATDRG1); FUNCTIONS IN: GTP binding, GTPase activity; LOCATED IN: cytoplasmic membrane-bounded vesicle; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), TGS (InterPro:IPR004095), GTP1/OBG (InterPro:IPR006073), GTP1/OBG, conserved site (InterPro:IPR006074), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: developmentally regulated GTP-binding protein, putative (TAIR:AT1G72660.3); Has 12682 Blast hits to 12667 proteins in 1595 species: Archae - 467; Bacteria - 6624; Metazoa - 742; Fungi - 378; Plants - 182; Viruses - 0; Other Eukaryotes - 4289 (source: NCBI BLink).  protein_id AT1G17470.2p  transcript_id AT1G17470.2  protein_id AT1G17470.2p  transcript_id AT1G17470.2  
At1g17480	chr1:006008070	0.0	C/6008070-6008132,6007735-6007995,6007426-6007620,6007237-6007350,6006675-6007157	AT1G17480.1  CDS  gene_syn F28G4.3, F28G4_3, IQ-domain 7, IQD7  gene IQD7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product IQD7 (IQ-domain 7); calmodulin binding  note IQ-domain 7 (IQD7); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: iqd8 (IQ-domain 8); calmodulin binding (TAIR:AT1G72670.1); Has 430 Blast hits to 429 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 4; Plants - 408; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G17480.1p  transcript_id AT1G17480.1  protein_id AT1G17480.1p  transcript_id AT1G17480.1  
At1g17490	chr1:006008669	0.0	W/6008669-6008699,6008963-6009165	AT1G17490.1  CDS  gene_syn F28G4.23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72690.1); Has 29 Blast hits to 23 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G17490.1p  transcript_id AT1G17490.1  protein_id AT1G17490.1p  transcript_id AT1G17490.1  
At1g17495	chr1:006009570	0.0	C/6009570-6013742	AT1G17495.1  mRNA_TE_gene  pseudo  gene_syn F28G4.2  note Transposable element gene, copia-like retrotransposon family, has a 4.7e-213 P-value blast match to gb|AAO73521.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At1g17500	chr1:006018757	0.0	W/6018757-6020531,6020616-6020726,6020819-6021095,6021181-6021269,6021350-6021434,6021524-6021733,6021829-6021954,6022064-6022162,6022257-6022448,6022515-6023201	AT1G17500.1  CDS  gene_syn F1L3.21, F1L3_21  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process ATP biosynthetic process|GO:0006754||IEA  go_process metabolic process|GO:0008152||IEA  go_process phospholipid transport|GO:0015914||IEA  go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662||ISS  product ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism  note ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: metabolic process, ATP biosynthetic process, phospholipid transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, phospholipid-translocating, flippase (InterPro:IPR006539), ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), HAD superfamily hydrolase-like, type 3 (InterPro:IPR013200); BEST Arabidopsis thaliana protein match is: haloacid dehalogenase-like hydrolase family protein (TAIR:AT1G72700.1); Has 8711 Blast hits to 7800 proteins in 976 species: Archae - 90; Bacteria - 2043; Metazoa - 3061; Fungi - 1400; Plants - 503; Viruses - 3; Other Eukaryotes - 1611 (source: NCBI BLink).  protein_id AT1G17500.1p  transcript_id AT1G17500.1  protein_id AT1G17500.1p  transcript_id AT1G17500.1  
At1g17510	chr1:006024005	0.0	C/6024005-6024211,6023704-6023865	AT1G17510.1  CDS  gene_syn F1L3.22, F1L3_22  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G17510.1p  transcript_id AT1G17510.1  protein_id AT1G17510.1p  transcript_id AT1G17510.1  
At1g17520	chr1:006027075	0.0	C/6027075-6027224,6026293-6026528,6026078-6026162,6025505-6025606,6025093-6025378,6024959-6024990	AT1G17520.1  CDS  gene_syn F1L3.23, F1L3_23  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product DNA-binding protein, putative  note DNA-binding protein, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Histone H1/H5 (InterPro:IPR005818), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: DNA-binding family protein / histone H1/H5 family protein (TAIR:AT1G72740.1); Has 615 Blast hits to 611 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 63; Plants - 394; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT1G17520.1p  transcript_id AT1G17520.1  protein_id AT1G17520.1p  transcript_id AT1G17520.1  
At1g17530	chr1:006027723	0.0	W/6027723-6028286	AT1G17530.1  CDS  gene_syn ATTIM23-1, F11A6.23, TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 23  gene ATTIM23-1  function Encodes a translocase of inner mitochondrial membrane.  go_component mitochondrial inner membrane|GO:0005743|12692332|IDA  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744|12692332|TAS  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744||ISS  go_process protein targeting to mitochondrion|GO:0006626|12692332|TAS  go_process protein transport|GO:0015031||ISS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450|12692332|TAS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product ATTIM23-1 (TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 23); P-P-bond-hydrolysis-driven protein transmembrane transporter  note TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 23 (ATTIM23-1); FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein transport, protein targeting to mitochondrion; LOCATED IN: mitochondrial inner membrane, mitochondrial inner membrane presequence translocase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial import inner membrane translocase, subunit Tim23 (InterPro:IPR005681), Mitochondrial import inner membrane translocase, subunit Tim17/22 (InterPro:IPR003397); BEST Arabidopsis thaliana protein match is: ATTIM23-2; P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter (TAIR:AT1G72750.1); Has 598 Blast hits to 598 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 348; Fungi - 138; Plants - 78; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT1G17530.1p  transcript_id AT1G17530.1  protein_id AT1G17530.1p  transcript_id AT1G17530.1  
At1g17540	chr1:006032485	0.0	C/6032485-6032641,6032315-6032412,6032094-6032215,6031753-6032004,6031479-6031662,6031341-6031397,6031159-6031236,6030654-6031061,6030212-6030575,6029714-6030123,6029551-6029607	AT1G17540.1  CDS  gene_syn F1L3.25, F1L3_25  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process response to stress|GO:0006950||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product kinase  note kinase; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), UspA (InterPro:IPR006016), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G72760.1); Has 80467 Blast hits to 79540 proteins in 3200 species: Archae - 56; Bacteria - 7222; Metazoa - 35486; Fungi - 6119; Plants - 18111; Viruses - 261; Other Eukaryotes - 13212 (source: NCBI BLink).  protein_id AT1G17540.1p  transcript_id AT1G17540.1  protein_id AT1G17540.1p  transcript_id AT1G17540.1  
At1g17545	chr1:006033109	0.0	W/6033109-6033124,6033307-6033509,6033588-6033908	AT1G17545.1  CDS  gene_syn F1L3.26, F1L3_26  go_function catalytic activity|GO:0003824||IEA  go_process biological_process|GO:0008150||ND  product protein phosphatase 2C-related / PP2C-related  note protein phosphatase 2C-related / PP2C-related; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: HAB2; catalytic/ protein serine/threonine phosphatase (TAIR:AT1G17550.1); Has 211 Blast hits to 210 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 207; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G17545.1p  transcript_id AT1G17545.1  protein_id AT1G17545.1p  transcript_id AT1G17545.1  
At1g17550	chr1:006034917	0.0	W/6034917-6035660,6035859-6036209,6036305-6036410,6036605-6036939	AT1G17550.1  CDS  gene_syn F1L3.38, HAB2  gene HAB2  function Protein Phosphatase 2C  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product HAB2; catalytic/ protein serine/threonine phosphatase  note HAB2; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: HAB1 (HOMOLOGY TO ABI1); catalytic/ protein serine/threonine phosphatase (TAIR:AT1G72770.1); Has 4262 Blast hits to 4251 proteins in 277 species: Archae - 0; Bacteria - 94; Metazoa - 1353; Fungi - 505; Plants - 1343; Viruses - 7; Other Eukaryotes - 960 (source: NCBI BLink).  protein_id AT1G17550.1p  transcript_id AT1G17550.1  protein_id AT1G17550.1p  transcript_id AT1G17550.1  
At1g17560	chr1:006038541	0.0	C/6038541-6038574,6038205-6038296,6037635-6038099	AT1G17560.1  CDS  gene_syn F1L3.27, F1L3_27, HLL, HUELLENLOS  gene HLL  function Mutant shows abnormal ovule development  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_component large ribosomal subunit|GO:0015934||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product HLL (HUELLENLOS); structural constituent of ribosome  note HUELLENLOS (HLL); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L14, bacterial-type (InterPro:IPR005745), Ribosomal protein L14b/L23e (InterPro:IPR000218); BEST Arabidopsis thaliana protein match is: ribosomal protein L14 family protein / huellenlos paralog (HLP) (TAIR:AT5G46160.2); Has 6351 Blast hits to 6351 proteins in 1820 species: Archae - 223; Bacteria - 2991; Metazoa - 188; Fungi - 181; Plants - 544; Viruses - 0; Other Eukaryotes - 2224 (source: NCBI BLink).  protein_id AT1G17560.1p  transcript_id AT1G17560.1  protein_id AT1G17560.1p  transcript_id AT1G17560.1  
At1g17570	chr1:006038757	0.0	W/6038757-6038838	AT1G17570.1  tRNA  gene_syn 52177.TRNA-SER-1, 60124.TRNA-SER-1, AT1G17575  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT1G17570.1  
At1g17580	chr1:006039453	0.0	W/6039453-6039455,6039835-6039960,6040579-6040716,6040824-6040969,6041059-6041215,6041305-6041363,6041569-6041728,6041834-6041983,6042071-6042207,6042317-6042463,6042555-6042656,6042966-6043023,6043112-6043213,6043373-6043410,6043493-6043619,6043708-6043878,6043957-6044088,6044298-6044407,6044505-6044565,6044778-6044955,6045145-6045350,6045464-6045583,6045681-6045779,6045899-6046117,6046319-6046458,6046673-6046790,6046874-6046924,6047006-6047056,6047170-6047340,6047424-6047579,6047663-6047872,6047984-6048130,6048234-6048304,6048387-6048486,6048565-6048678,6048757-6048837,6049003-6049085,6049186-6049309	AT1G17580.1  CDS  gene_syn ARABIDOPSIS MYOSIN 1, ATMYA1, F1L3.28, F1L3_28, MYA1, MYOSIN 1, MYOSIN XI 1, XI-1  gene MYA1  function Encodes a member of the type XI myosin protein family involved in organelle trafficking and overall plant development.  go_component myosin complex|GO:0016459||IEA  go_component myosin complex|GO:0016459||ISS  go_process post-embryonic development|GO:0009791|19060218|IGI  go_process fruit development|GO:0010154|19060218|IGI  go_process cell growth|GO:0016049|19060218|IGI  go_process actin filament-based movement|GO:0030048|11516337|TAS  go_process cell division|GO:0051301|19060218|IGI  go_process Golgi localization|GO:0051645|19060218|IMP  go_process mitochondrion localization|GO:0051646|19060218|IGI  go_process peroxisome localization|GO:0060151|19060218|IGI  go_function motor activity|GO:0003774|11516337|ISS  go_function motor activity|GO:0003774||ISS  go_function protein binding|GO:0005515||ISS  product MYA1 (MYOSIN 1); motor/ protein binding  note MYOSIN 1 (MYA1); FUNCTIONS IN: protein binding, motor activity; INVOLVED IN: in 8 processes; LOCATED IN: myosin complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor region (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: XIK; motor/ protein binding (TAIR:AT5G20490.1); Has 15669 Blast hits to 11058 proteins in 781 species: Archae - 80; Bacteria - 546; Metazoa - 10392; Fungi - 950; Plants - 573; Viruses - 13; Other Eukaryotes - 3115 (source: NCBI BLink).  protein_id AT1G17580.1p  transcript_id AT1G17580.1  protein_id AT1G17580.1p  transcript_id AT1G17580.1  
At1g17590	chr1:006051702	0.0	C/6051702-6051984,6051451-6051551,6051295-6051369,6050932-6051087,6050481-6050852	AT1G17590.1  CDS  gene_syn F1L3.29, F1L3_29, NF-YA8, NUCLEAR FACTOR Y, SUBUNIT A8  gene NF-YA8  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_component CCAAT-binding factor complex|GO:0016602||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component CCAAT-binding factor complex|GO:0016602||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product NF-YA8 (NUCLEAR FACTOR Y, SUBUNIT A8); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT A8 (NF-YA8); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus, chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: NF-YA3 (NUCLEAR FACTOR Y, SUBUNIT A3); transcription factor (TAIR:AT1G72830.1); Has 444 Blast hits to 444 proteins in 111 species: Archae - 0; Bacteria - 2; Metazoa - 125; Fungi - 88; Plants - 215; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G17590.1p  transcript_id AT1G17590.1  protein_id AT1G17590.1p  transcript_id AT1G17590.1  
At1g17590	chr1:006051702	0.0	C/6051702-6051984,6051451-6051551,6051295-6051369,6050932-6051087,6050481-6050852	AT1G17590.2  CDS  gene_syn F1L3.29, F1L3_29, NF-YA8, NUCLEAR FACTOR Y, SUBUNIT A8  gene NF-YA8  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_component CCAAT-binding factor complex|GO:0016602||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component CCAAT-binding factor complex|GO:0016602||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product NF-YA8 (NUCLEAR FACTOR Y, SUBUNIT A8); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT A8 (NF-YA8); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus, chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: NF-YA3 (NUCLEAR FACTOR Y, SUBUNIT A3); transcription factor (TAIR:AT1G72830.1); Has 444 Blast hits to 444 proteins in 111 species: Archae - 0; Bacteria - 2; Metazoa - 125; Fungi - 88; Plants - 215; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G17590.2p  transcript_id AT1G17590.2  protein_id AT1G17590.2p  transcript_id AT1G17590.2  
At1g17590	chr1:006051702	0.0	C/6051702-6051984,6051451-6051551,6051295-6051369,6050932-6051087,6050481-6050852	AT1G17590.3  CDS  gene_syn F1L3.29, F1L3_29, NF-YA8, NUCLEAR FACTOR Y, SUBUNIT A8  gene NF-YA8  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_component CCAAT-binding factor complex|GO:0016602||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component CCAAT-binding factor complex|GO:0016602||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product NF-YA8 (NUCLEAR FACTOR Y, SUBUNIT A8); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT A8 (NF-YA8); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus, chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: NF-YA3 (NUCLEAR FACTOR Y, SUBUNIT A3); transcription factor (TAIR:AT1G72830.1); Has 444 Blast hits to 444 proteins in 111 species: Archae - 0; Bacteria - 2; Metazoa - 125; Fungi - 88; Plants - 215; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G17590.3p  transcript_id AT1G17590.3  protein_id AT1G17590.3p  transcript_id AT1G17590.3  
At1g17600	chr1:006056109	0.0	C/6056109-6056572,6054908-6056009,6054505-6054807,6053250-6054458	AT1G17600.1  CDS  gene_syn F1L3.30, F1L3_30  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, protein binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: leaf whorl, leaf; EXPRESSED DURING: LP.10 ten leaves visible; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat 3 (InterPro:IPR011713), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G40100.1); Has 18064 Blast hits to 12170 proteins in 518 species: Archae - 16; Bacteria - 1103; Metazoa - 3527; Fungi - 149; Plants - 12669; Viruses - 0; Other Eukaryotes - 600 (source: NCBI BLink).  protein_id AT1G17600.1p  transcript_id AT1G17600.1  protein_id AT1G17600.1p  transcript_id AT1G17600.1  
At1g17610	chr1:006056895	0.0	W/6056895-6058157	AT1G17610.1  CDS  gene_syn F11A6.20, F11A6_20  go_component endomembrane system|GO:0012505||IEA  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function ATP binding|GO:0005524||IEA  product disease resistance protein-related  note disease resistance protein-related; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane, endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: ATP binding / nucleoside-triphosphatase/ nucleotide binding / transmembrane receptor (TAIR:AT5G40090.1); Has 5001 Blast hits to 4962 proteins in 191 species: Archae - 0; Bacteria - 24; Metazoa - 2; Fungi - 1; Plants - 4966; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G17610.1p  transcript_id AT1G17610.1  protein_id AT1G17610.1p  transcript_id AT1G17610.1  
At1g17615	chr1:006059441	0.0	W/6059441-6059919,6060004-6060667	AT1G17615.1  CDS  gene_syn F1L3.31, F1L3_31  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS class), putative  note disease resistance protein (TIR-NBS class), putative; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS class), putative (TAIR:AT1G72950.1); Has 3234 Blast hits to 3155 proteins in 156 species: Archae - 0; Bacteria - 54; Metazoa - 37; Fungi - 0; Plants - 3140; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G17615.1p  transcript_id AT1G17615.1  protein_id AT1G17615.1p  transcript_id AT1G17615.1  
At1g17620	chr1:006062313	0.0	W/6062313-6063107	AT1G17620.1  CDS  gene_syn F11A6.25  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11890.1); Has 539 Blast hits to 538 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 539; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G17620.1p  transcript_id AT1G17620.1  protein_id AT1G17620.1p  transcript_id AT1G17620.1  
At1g17630	chr1:006064525	0.0	W/6064525-6066720	AT1G17630.1  CDS  gene_syn F11A6.24  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: shoot apex, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G20230.1); Has 14325 Blast hits to 4985 proteins in 149 species: Archae - 0; Bacteria - 2; Metazoa - 95; Fungi - 52; Plants - 13910; Viruses - 0; Other Eukaryotes - 266 (source: NCBI BLink).  protein_id AT1G17630.1p  transcript_id AT1G17630.1  protein_id AT1G17630.1p  transcript_id AT1G17630.1  
At1g17640	chr1:006068902	0.0	C/6068902-6069098,6068730-6068770,6068355-6068518,6068152-6068260,6067906-6068075,6067394-6067822	AT1G17640.1  CDS  gene_syn F11A6.17  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT3G13224.2); Has 43180 Blast hits to 20309 proteins in 939 species: Archae - 10; Bacteria - 9650; Metazoa - 19480; Fungi - 2930; Plants - 6730; Viruses - 257; Other Eukaryotes - 4123 (source: NCBI BLink).  protein_id AT1G17640.1p  transcript_id AT1G17640.1  protein_id AT1G17640.1p  transcript_id AT1G17640.1  
At1g17650	chr1:006071781	0.0	C/6071781-6071964,6071500-6071581,6071317-6071382,6071128-6071203,6070985-6071040,6070713-6070797,6070559-6070619,6070344-6070396,6070185-6070255,6070030-6070102,6069849-6069953,6069594-6069758	AT1G17650.1  CDS  gene_syn F11A6.12, GLYOXYLATE REDUCTASE 2, GLYR2, GR2  gene GLYR2  function Glyoxylate reductase located in chloroplasts.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process pentose-phosphate shunt|GO:0006098||IEA  go_process metabolic process|GO:0008152||IEA  go_component chloroplast|GO:0009507|18495639|IDA  go_function phosphogluconate dehydrogenase (decarboxylating) activity|GO:0004616||ISS  go_function glyoxylate reductase (NADP) activity|GO:0030267|18495639|IDA  product GLYR2 (GLYOXYLATE REDUCTASE 2); glyoxylate reductase (NADP)/ phosphogluconate dehydrogenase (decarboxylating)  note GLYOXYLATE REDUCTASE 2 (GLYR2); FUNCTIONS IN: phosphogluconate dehydrogenase (decarboxylating) activity, glyoxylate reductase (NADP) activity; INVOLVED IN: pentose-phosphate shunt, metabolic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), Dehydrogenase, multihelical (InterPro:IPR013328), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), 3-hydroxyacid dehydrogenase/reductase (InterPro:IPR015815), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: GLYR1 (GLYOXYLATE REDUCTASE 1); 3-hydroxybutyrate dehydrogenase/ phosphogluconate dehydrogenase (decarboxylating) (TAIR:AT3G25530.1); Has 11370 Blast hits to 11350 proteins in 1163 species: Archae - 88; Bacteria - 5511; Metazoa - 285; Fungi - 283; Plants - 179; Viruses - 0; Other Eukaryotes - 5024 (source: NCBI BLink).  protein_id AT1G17650.1p  transcript_id AT1G17650.1  protein_id AT1G17650.1p  transcript_id AT1G17650.1  
At1g17665	chr1:006073873	0.0	C/6073873-6074484,6073470-6073522,6073181-6073268,6073003-6073101,6072598-6072762	AT1G17665.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 11 growth stages; Has 103 Blast hits to 100 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 4; Plants - 19; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT1G17665.1p  transcript_id AT1G17665.1  protein_id AT1G17665.1p  transcript_id AT1G17665.1  
At1g17660	chr1:006075820	0.0	W/6075820-6075891	AT1G17660.1  tRNA  gene_syn 60124.TRNA-ASP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asp (anticodon: GTC)  transcript_id AT1G17660.1  
At1g17670	chr1:006075945	0.0	C/6075945-6076018	AT1G17670.1  tRNA  gene_syn 60124.TRNA-VAL-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Val (anticodon: AAC)  transcript_id AT1G17670.1  
At1g17680	chr1:006076388	0.0	W/6076388-6076701,6076920-6077007,6077140-6077247,6077487-6077671,6078021-6078216,6078344-6078601,6079037-6079256,6079537-6079650,6079973-6080118,6080363-6080448,6080542-6080659,6080889-6080933,6081082-6081208,6081296-6081410,6081497-6081687,6081781-6082160	AT1G17680.1  CDS  gene_syn F11A6.2, F11A6_2  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product transcription factor-related  note transcription factor-related; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); Has 5115 Blast hits to 2913 proteins in 387 species: Archae - 48; Bacteria - 954; Metazoa - 1578; Fungi - 711; Plants - 242; Viruses - 52; Other Eukaryotes - 1530 (source: NCBI BLink).  protein_id AT1G17680.1p  transcript_id AT1G17680.1  protein_id AT1G17680.1p  transcript_id AT1G17680.1  
At1g17680	chr1:006076388	0.0	W/6076388-6076701,6076920-6077007,6077140-6077247,6077487-6077671,6078021-6078216,6078344-6078601,6079037-6079256,6079537-6079650,6079973-6080118,6080363-6080448,6080542-6080659,6080889-6080933,6081082-6081208,6081296-6081410,6081497-6081687,6081781-6082160	AT1G17680.2  CDS  gene_syn F11A6.2, F11A6_2  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product transcription factor-related  note transcription factor-related; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); Has 5115 Blast hits to 2913 proteins in 387 species: Archae - 48; Bacteria - 954; Metazoa - 1578; Fungi - 711; Plants - 242; Viruses - 52; Other Eukaryotes - 1530 (source: NCBI BLink).  protein_id AT1G17680.2p  transcript_id AT1G17680.2  protein_id AT1G17680.2p  transcript_id AT1G17680.2  
At1g17690	chr1:006088037	0.0	C/6088037-6088157,6087801-6087930,6087418-6087542,6087094-6087253,6086849-6086993,6086628-6086751,6086421-6086521,6086188-6086319,6086005-6086085,6085602-6085798,6085427-6085499,6085280-6085339,6085038-6085076,6084867-6084955,6084705-6084769,6084527-6084573,6084261-6084320,6084122-6084193,6083910-6083939,6083650-6083744,6083450-6083555,6083286-6083348,6083121-6083195,6082878-6082952	AT1G17690.1  CDS  gene_syn F11A6.3, F11A6_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1253 (InterPro:IPR010678); Has 24487 Blast hits to 12385 proteins in 666 species: Archae - 70; Bacteria - 4843; Metazoa - 8327; Fungi - 2833; Plants - 863; Viruses - 487; Other Eukaryotes - 7064 (source: NCBI BLink).  protein_id AT1G17690.1p  transcript_id AT1G17690.1  protein_id AT1G17690.1p  transcript_id AT1G17690.1  
At1g17700	chr1:006089588	0.0	W/6089588-6090130	AT1G17700.1  CDS  gene_syn F11A6.4, F11A6_4, PRA1.F1, PRENYLATED RAB ACCEPTOR 1.F1  gene PRA1.F1  go_component endoplasmic reticulum|GO:0005783|18583532|IDA  go_process vesicle-mediated transport|GO:0016192|18583532|IDA  go_function molecular_function|GO:0003674||ND  product PRA1.F1 (PRENYLATED RAB ACCEPTOR 1.F1)  note PRENYLATED RAB ACCEPTOR 1.F1 (PRA1.F1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: PRA7 (TAIR:AT1G55190.1); Has 338 Blast hits to 338 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 98; Fungi - 21; Plants - 187; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT1G17700.1p  transcript_id AT1G17700.1  protein_id AT1G17700.1p  transcript_id AT1G17700.1  
At1g17710	chr1:006091583	0.0	C/6091583-6091755,6091309-6091510,6090763-6091131	AT1G17710.2  CDS  gene_syn F11A6.5, F11A6_5  go_function phosphatase activity|GO:0016791||IEA  product phosphatase  note phosphatase; FUNCTIONS IN: phosphatase activity; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate phosphatase-related (InterPro:IPR006384); BEST Arabidopsis thaliana protein match is: phosphatase (TAIR:AT1G73010.1); Has 252 Blast hits to 250 proteins in 72 species: Archae - 0; Bacteria - 2; Metazoa - 155; Fungi - 12; Plants - 57; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G17710.2p  transcript_id AT1G17710.2  protein_id AT1G17710.2p  transcript_id AT1G17710.2  
At1g17710	chr1:006091829	0.0	C/6091829-6091975,6091583-6091704,6091309-6091510,6090763-6091131	AT1G17710.1  CDS  gene_syn F11A6.5, F11A6_5  go_process metabolic process|GO:0008152||IEA  go_function phosphatase activity|GO:0016791||IEA  product phosphatase  note phosphatase; FUNCTIONS IN: phosphatase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate phosphatase, PHOSPHO2 (InterPro:IPR016965), HAD-superfamily hydrolase, subfamily IB, PSPase-like (InterPro:IPR006383), Pyridoxal phosphate phosphatase-related (InterPro:IPR006384); BEST Arabidopsis thaliana protein match is: phosphatase (TAIR:AT1G73010.1); Has 262 Blast hits to 260 proteins in 77 species: Archae - 0; Bacteria - 12; Metazoa - 155; Fungi - 12; Plants - 57; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G17710.1p  transcript_id AT1G17710.1  protein_id AT1G17710.1p  transcript_id AT1G17710.1  
At1g17720	chr1:006097960	0.0	C/6097960-6098065,6097026-6097129,6096848-6096943,6096641-6096760,6096213-6096389,6095832-6095923,6095444-6095562,6095172-6095295,6094862-6094985,6094687-6094755,6094514-6094605,6094338-6094415,6094168-6094235,6093949-6094085	AT1G17720.1  CDS  gene_syn ATB BETA, F11A6.6, F11A6_6  gene ATB BETA  function type 2A protein serine/threonine phosphatase 55 kDa B  go_component protein phosphatase type 2A complex|GO:0000159|8756607|ISS  go_process protein amino acid dephosphorylation|GO:0006470|8756607|ISS  go_function nucleotide binding|GO:0000166||ISS  go_function protein phosphatase type 2A regulator activity|GO:0008601|8756607|ISS  product ATB BETA; nucleotide binding / protein phosphatase type 2A regulator  note ATB BETA; FUNCTIONS IN: protein phosphatase type 2A regulator activity, nucleotide binding; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein phosphatase type 2A complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Protein phosphatase 2A, regulatory subunit PR55 (InterPro:IPR000009), Protein phosphatase 2A, regulatory subunit PR55, conserved site (InterPro:IPR018067), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: ATB ALPHA; nucleotide binding / protein phosphatase type 2A regulator (TAIR:AT1G51690.1); Has 817 Blast hits to 774 proteins in 172 species: Archae - 0; Bacteria - 70; Metazoa - 397; Fungi - 147; Plants - 80; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).  protein_id AT1G17720.1p  transcript_id AT1G17720.1  protein_id AT1G17720.1p  transcript_id AT1G17720.1  
At1g17720	chr1:006097960	0.0	C/6097960-6098065,6097026-6097129,6096848-6096943,6096641-6096760,6096216-6096389,6095832-6095923,6095444-6095562,6095172-6095295,6094862-6094985,6094687-6094755,6094514-6094605,6094338-6094415,6094168-6094235,6093949-6094085	AT1G17720.2  CDS  gene_syn ATB BETA, F11A6.6, F11A6_6  gene ATB BETA  function type 2A protein serine/threonine phosphatase 55 kDa B  go_component protein phosphatase type 2A complex|GO:0000159|8756607|ISS  go_process protein amino acid dephosphorylation|GO:0006470|8756607|ISS  go_function nucleotide binding|GO:0000166||ISS  go_function protein phosphatase type 2A regulator activity|GO:0008601|8756607|ISS  product ATB BETA; nucleotide binding / protein phosphatase type 2A regulator  note ATB BETA; FUNCTIONS IN: protein phosphatase type 2A regulator activity, nucleotide binding; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein phosphatase type 2A complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Protein phosphatase 2A, regulatory subunit PR55 (InterPro:IPR000009), Protein phosphatase 2A, regulatory subunit PR55, conserved site (InterPro:IPR018067), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: ATB ALPHA; nucleotide binding / protein phosphatase type 2A regulator (TAIR:AT1G51690.2); Has 788 Blast hits to 753 proteins in 172 species: Archae - 0; Bacteria - 55; Metazoa - 394; Fungi - 149; Plants - 80; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT1G17720.2p  transcript_id AT1G17720.2  protein_id AT1G17720.2p  transcript_id AT1G17720.2  
At1g17730	chr1:006099210	0.0	W/6099210-6099534,6099867-6100153	AT1G17730.1  CDS  gene_syn F11A6.7, F11A6_7, VACUOLAR PROTEIN SORTING 46.1, VPS46.1  gene VPS46.1  go_component cellular_component|GO:0005575||ND  go_process vesicle-mediated transport|GO:0016192|16488176|ISS  product VPS46.1 (VACUOLAR PROTEIN SORTING 46.1)  note VACUOLAR PROTEIN SORTING 46.1 (VPS46.1); INVOLVED IN: vesicle-mediated transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: VPS46.2 (TAIR:AT1G73030.1); Has 975 Blast hits to 975 proteins in 162 species: Archae - 2; Bacteria - 0; Metazoa - 421; Fungi - 185; Plants - 220; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink).  protein_id AT1G17730.1p  transcript_id AT1G17730.1  protein_id AT1G17730.1p  transcript_id AT1G17730.1  
At1g17745	chr1:006101157	0.0	W/6101157-6101775,6103633-6104120,6104212-6104979	AT1G17745.1  CDS  gene_syn 3-PHOSPHOGLYCERATE DEHYDROGENASE, PGDH  gene PGDH  function encodes a 3-Phosphoglycerate dehydrogenase  go_component chloroplast|GO:0009507|18431481|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component chloroplast|GO:0009507|9867856|IDA  go_process L-serine biosynthetic process|GO:0006564|9867856|TAS  go_function phosphoglycerate dehydrogenase activity|GO:0004617|9867856|IGI  product PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE); phosphoglycerate dehydrogenase  note 3-PHOSPHOGLYCERATE DEHYDROGENASE (PGDH); FUNCTIONS IN: phosphoglycerate dehydrogenase activity; INVOLVED IN: L-serine biosynthetic process; LOCATED IN: cytosol, nucleus, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-3-phosphoglycerate dehydrogenase (InterPro:IPR006236), D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), D-3-phosphogylcerate Dehydrogenase (InterPro:IPR015508), Amino acid-binding ACT (InterPro:IPR002912), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: EDA9 (embryo sac development arrest 9); ATP binding (TAIR:AT4G34200.1); Has 20865 Blast hits to 20864 proteins in 1535 species: Archae - 286; Bacteria - 9648; Metazoa - 666; Fungi - 752; Plants - 322; Viruses - 5; Other Eukaryotes - 9186 (source: NCBI BLink).  protein_id AT1G17745.1p  transcript_id AT1G17745.1  protein_id AT1G17745.1p  transcript_id AT1G17745.1  
At1g17744	chr1:006101355	0.0	C/6101355-6101795	AT1G17744.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G17744.1p  transcript_id AT1G17744.1  protein_id AT1G17744.1p  transcript_id AT1G17744.1  
At1g17750	chr1:006106656	0.0	W/6106656-6109551,6109638-6110008	AT1G17750.1  CDS  gene_syn F11A6.9, F11A6_9  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: PEPR1 (PEP1 receptor 1); ATP binding / kinase/ protein binding / protein serine/threonine kinase (TAIR:AT1G73080.1); Has 173699 Blast hits to 102983 proteins in 3355 species: Archae - 96; Bacteria - 14466; Metazoa - 69118; Fungi - 7871; Plants - 59504; Viruses - 412; Other Eukaryotes - 22232 (source: NCBI BLink).  protein_id AT1G17750.1p  transcript_id AT1G17750.1  protein_id AT1G17750.1p  transcript_id AT1G17750.1  
At1g17760	chr1:006116218	0.0	C/6116218-6116271,6116051-6116113,6115856-6115965,6115616-6115716,6115253-6115314,6115035-6115175,6114791-6114919,6114514-6114560,6114079-6114142,6113856-6113976,6113600-6113658,6113451-6113513,6113168-6113308,6112697-6112761,6112421-6112517,6111969-6112028,6111426-6111578,6111264-6111330,6111099-6111176,6110846-6111010,6110555-6110746,6110208-6110380	AT1G17760.1  CDS  gene_syn ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77, ATCSTF77, CSTF77, F11A6.10, F11A6_10  gene CSTF77  function Encodes a homolog of the mammalian protein CstF77, a polyadenylation factor subunit.  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||IEA  go_process RNA processing|GO:0006396||IEA  go_process mRNA processing|GO:0006397||IEA  go_process mRNA processing|GO:0006397||ISS  go_function protein binding|GO:0005515|16282318|IPI  product CSTF77; protein binding  note CSTF77; FUNCTIONS IN: protein binding; INVOLVED IN: mRNA processing, RNA processing; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026), Suppressor of forked (InterPro:IPR008847); BEST Arabidopsis thaliana protein match is: PRP39; binding (TAIR:AT1G04080.1); Has 1516 Blast hits to 1135 proteins in 170 species: Archae - 0; Bacteria - 8; Metazoa - 684; Fungi - 474; Plants - 174; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).  protein_id AT1G17760.1p  transcript_id AT1G17760.1  protein_id AT1G17760.1p  transcript_id AT1G17760.1  
At1g17770	chr1:006120741	0.0	W/6120741-6122822	AT1G17770.1  CDS  gene_syn F2H15.1, F2H15_1, SDG17, SET DOMAIN PROTEIN 17, SU(VAR)3-9 HOMOLOG 7, SUVH7  gene SUVH7  function Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain.  go_component nucleus|GO:0005634||IEA  go_process chromatin modification|GO:0016568||IEA  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function histone-lysine N-methyltransferase activity|GO:0018024||IEA  product SUVH7 (SU(VAR)3-9 HOMOLOG 7); DNA binding / histone-lysine N-methyltransferase/ zinc ion binding  note SU(VAR)3-9 HOMOLOG 7 (SUVH7); FUNCTIONS IN: DNA binding, zinc ion binding, histone-lysine N-methyltransferase activity; INVOLVED IN: chromatin modification; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), AT hook, DNA-binding, conserved site (InterPro:IPR017956), SRA-YDG (InterPro:IPR003105), Pre-SET zinc-binding region (InterPro:IPR007728), Post-SET zinc-binding region (InterPro:IPR003616); BEST Arabidopsis thaliana protein match is: SDG21 (SET DOMAIN GROUP 21); histone methyltransferase (TAIR:AT2G24740.1); Has 3378 Blast hits to 3235 proteins in 305 species: Archae - 0; Bacteria - 221; Metazoa - 1804; Fungi - 298; Plants - 557; Viruses - 0; Other Eukaryotes - 498 (source: NCBI BLink).  protein_id AT1G17770.1p  transcript_id AT1G17770.1  protein_id AT1G17770.1p  transcript_id AT1G17770.1  
At1g17780	chr1:006124095	0.0	W/6124095-6124157,6124254-6124629,6124722-6124876,6124969-6125166	AT1G17780.2  CDS  gene_syn F2H15.22, F2H15_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16575.1); Has 12 Blast hits to 12 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G17780.2p  transcript_id AT1G17780.2  protein_id AT1G17780.2p  transcript_id AT1G17780.2  
At1g17780	chr1:006124317	0.0	W/6124317-6124629,6124722-6124978	AT1G17780.1  CDS  gene_syn F2H15.22, F2H15_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16575.1); Has 9 Blast hits to 9 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G17780.1p  transcript_id AT1G17780.1  protein_id AT1G17780.1p  transcript_id AT1G17780.1  
At1g17790	chr1:006126011	0.0	C/6126011-6127276,6125878-6125923,6125660-6125761,6125532-6125581	AT1G17790.1  CDS  gene_syn F2H15.2, F2H15_2  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product DNA-binding bromodomain-containing protein  note DNA-binding bromodomain-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: GTE3 (GLOBAL TRANSCRIPTION FACTOR GROUP E 3); DNA binding / histone binding (TAIR:AT1G73150.1); Has 10421 Blast hits to 6039 proteins in 444 species: Archae - 16; Bacteria - 924; Metazoa - 4753; Fungi - 937; Plants - 711; Viruses - 164; Other Eukaryotes - 2916 (source: NCBI BLink).  protein_id AT1G17790.1p  transcript_id AT1G17790.1  protein_id AT1G17790.1p  transcript_id AT1G17790.1  
At1g17800	chr1:006128828	0.0	W/6128828-6129038,6129180-6129391	AT1G17800.1  CDS  gene_syn F2H15.3, F2H15_3  go_component endomembrane system|GO:0012505||IEA  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function copper ion binding|GO:0005507||ISS  product plastocyanin-like domain-containing protein  note plastocyanin-like domain-containing protein; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, 4 leaf senescence stage, LP.02 two leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: ARPN (PLANTACYANIN); copper ion binding / electron carrier (TAIR:AT2G02850.1); Has 613 Blast hits to 609 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 613; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G17800.1p  transcript_id AT1G17800.1  protein_id AT1G17800.1p  transcript_id AT1G17800.1  
At1g17810	chr1:006130209	0.0	W/6130209-6130350,6130651-6130916,6131047-6131442	AT1G17810.1  CDS  gene_syn BETA-TIP, BETA-TONOPLAST INTRINSIC PROTEIN, F2H15.4, F2H15_4  gene BETA-TIP  function beta-tonoplast intrinsic protein (beta-TIP) mRNA, complete  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_function water channel activity|GO:0015250||ISS  product BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN); water channel  note BETA-TONOPLAST INTRINSIC PROTEIN (BETA-TIP); FUNCTIONS IN: water channel activity; INVOLVED IN: transport; LOCATED IN: integral to membrane, membrane; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: TIP3;1; water channel (TAIR:AT1G73190.1); Has 6723 Blast hits to 6717 proteins in 1236 species: Archae - 57; Bacteria - 2571; Metazoa - 1300; Fungi - 281; Plants - 1467; Viruses - 2; Other Eukaryotes - 1045 (source: NCBI BLink).  protein_id AT1G17810.1p  transcript_id AT1G17810.1  protein_id AT1G17810.1p  transcript_id AT1G17810.1  
At1g17820	chr1:006134909	0.0	C/6134909-6135115,6134308-6134549,6133591-6134221,6133122-6133488,6132882-6132976,6132515-6132709,6131751-6132425	AT1G17820.1  CDS  gene_syn F2H15.5, F2H15_5  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165|15358268|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product phosphoinositide binding  note phosphoinositide binding; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: phosphoinositide binding (TAIR:AT1G73200.1); Has 444 Blast hits to 309 proteins in 108 species: Archae - 0; Bacteria - 7; Metazoa - 132; Fungi - 162; Plants - 27; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT1G17820.1p  transcript_id AT1G17820.1  protein_id AT1G17820.1p  transcript_id AT1G17820.1  
At1g17830	chr1:006138059	0.0	C/6138059-6138172,6137203-6137420,6136883-6137117,6136696-6136781,6136515-6136606,6136118-6136386	AT1G17830.1  CDS  gene_syn F2H15.6, F2H15_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G73210.1); Has 147 Blast hits to 147 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G17830.1p  transcript_id AT1G17830.1  protein_id AT1G17830.1p  transcript_id AT1G17830.1  
At1g17840	chr1:006142870	0.0	W/6142870-6143253,6143479-6143768,6143858-6144029,6144111-6144233,6144317-6144445,6144533-6144727,6144808-6144894,6144976-6145248,6145337-6145444,6145544-6145894	AT1G17840.1  CDS  gene_syn ABCG11, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATWBC11, COF1, CUTICULAR DEFECT AND ORGAN FUSION 1, DESPERADO, DSO, F2H15.7, F2H15_7, WBC11, WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11  gene WBC11  function Encodes a plasma membrane-localized ATP-binding cassette transporter, that is required for cutin transport to the extracellular matrix.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component external side of plasma membrane|GO:0009897|17951461|IDA  go_process fatty acid transport|GO:0015908|17951461|TAS  go_process cutin transport|GO:0080051|17951461|IMP  go_function fatty acid transporter activity|GO:0015245|17951461|TAS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11); ATPase, coupled to transmembrane movement of substances / fatty acid transporter  note WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11 (WBC11); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, fatty acid transporter activity; INVOLVED IN: cutin transport, fatty acid transport; LOCATED IN: plasma membrane, external side of plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 (InterPro:IPR000412), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT3G21090.1); Has 215478 Blast hits to 198943 proteins in 2595 species: Archae - 4101; Bacteria - 151660; Metazoa - 6384; Fungi - 4122; Plants - 2563; Viruses - 10; Other Eukaryotes - 46638 (source: NCBI BLink).  protein_id AT1G17840.1p  transcript_id AT1G17840.1  protein_id AT1G17840.1p  transcript_id AT1G17840.1  
At1g17850	chr1:006148494	0.0	C/6148494-6148820,6148314-6148367,6148053-6148196,6147775-6147937,6147446-6147537,6147179-6147282,6146782-6147084,6146470-6146623	AT1G17850.1  CDS  gene_syn F2H15.8, F2H15_8  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: rhodanese-like domain-containing protein (TAIR:AT2G40760.1); Has 3833 Blast hits to 3832 proteins in 847 species: Archae - 0; Bacteria - 1695; Metazoa - 46; Fungi - 2; Plants - 52; Viruses - 0; Other Eukaryotes - 2038 (source: NCBI BLink).  protein_id AT1G17850.1p  transcript_id AT1G17850.1  protein_id AT1G17850.1p  transcript_id AT1G17850.1  
At1g17860	chr1:006149343	0.0	W/6149343-6149933	AT1G17860.1  CDS  gene_syn F2H15.9, F2H15_9  go_component cell wall|GO:0005618|15593128|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function endopeptidase inhibitor activity|GO:0004866||IEA  go_process biological_process|GO:0008150||ND  go_function endopeptidase inhibitor activity|GO:0004866||ISS  product trypsin and protease inhibitor family protein / Kunitz family protein  note trypsin and protease inhibitor family protein / Kunitz family protein; FUNCTIONS IN: endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I3, Kunitz legume (InterPro:IPR002160), Kunitz inhibitor ST1-like (InterPro:IPR011065); BEST Arabidopsis thaliana protein match is: trypsin and protease inhibitor family protein / Kunitz family protein (TAIR:AT1G73260.1); Has 508 Blast hits to 508 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 507; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G17860.1p  transcript_id AT1G17860.1  protein_id AT1G17860.1p  transcript_id AT1G17860.1  
At1g17870	chr1:006151640	0.0	C/6151640-6152185,6151349-6151546,6151030-6151254,6150708-6150946,6150470-6150624,6150036-6150394	AT1G17870.1  CDS  gene_syn ATEGY3, EGY3, ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3, F2H15.10, F2H15_10  gene EGY3  function S2P-like putative metalloprotease, also contain transmembrane helices near their C-termini and many of them, five of seven, contain a conserved zinc-binding motif HEXXH. Homolog of EGY1. Each of the EGY1 and EGY-like proteins share two additional highly conserved motifs, the previously reported NPDG motif (aa 442 454 in EGY1, Rudner et al., 1999) and a newly defined GNLR motif (aa 171 179 in EGY1). The GNLR motif is a novel signature motif unique to EGY1 and EGY-like proteins as well as other EGY1 orthologs found in cyanobacteria.  go_component chloroplast|GO:0009507||IEA  go_process response to heat|GO:0009408|17059409|IEP  go_process response to high light intensity|GO:0009644|17059409|IEP  go_process response to hydrogen peroxide|GO:0042542|17059409|IEP  product EGY3 (ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3)  note ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3 (EGY3); INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: EGY1 (ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1); metalloendopeptidase (TAIR:AT5G35220.1); Has 528 Blast hits to 520 proteins in 155 species: Archae - 62; Bacteria - 188; Metazoa - 68; Fungi - 12; Plants - 75; Viruses - 1; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT1G17870.1p  transcript_id AT1G17870.1  protein_id AT1G17870.1p  transcript_id AT1G17870.1  
At1g17880	chr1:006153358	0.0	C/6153358-6153425,6153120-6153268,6152974-6153030,6152842-6152880,6152572-6152756	AT1G17880.1  CDS  gene_syn F2H15.11, F2H15_11  go_process response to salt stress|GO:0009651|17916636|IEP  go_component cellular_component|GO:0005575||ND  go_function transcription factor activity|GO:0003700||ISS  product nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative  note nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nascent polypeptide-associated complex NAC (InterPro:IPR002715); BEST Arabidopsis thaliana protein match is: nascent polypeptide-associated complex (NAC) domain-containing protein (TAIR:AT1G73230.1); Has 620 Blast hits to 620 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 334; Fungi - 124; Plants - 89; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT1G17880.1p  transcript_id AT1G17880.1  protein_id AT1G17880.1p  transcript_id AT1G17880.1  
At1g17890	chr1:006154478	0.0	C/6154478-6155440	AT1G17890.2  CDS  gene_syn F2H15.12, F2H15_12, GER2  gene GER2  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  go_component cellular_component|GO:0005575||ND  go_process GDP-L-fucose biosynthetic process|GO:0042350||ISS  go_function catalytic activity|GO:0003824||ISS  product GER2; binding / catalytic/ coenzyme binding  note GER2; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: GDP-L-fucose biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: GER1 (GDP-4-KETO-6-DEOXYMANNOSE-3,5-EPIMERASE-4-REDUCTASE 1); GDP-L-fucose synthase (TAIR:AT1G73250.1); Has 18894 Blast hits to 18893 proteins in 1572 species: Archae - 373; Bacteria - 8804; Metazoa - 430; Fungi - 144; Plants - 435; Viruses - 22; Other Eukaryotes - 8686 (source: NCBI BLink).  protein_id AT1G17890.2p  transcript_id AT1G17890.2  protein_id AT1G17890.2p  transcript_id AT1G17890.2  
At1g17890	chr1:006154478	0.0	C/6154478-6155440	AT1G17890.3  CDS  gene_syn F2H15.12, F2H15_12, GER2  gene GER2  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  go_component cellular_component|GO:0005575||ND  go_process GDP-L-fucose biosynthetic process|GO:0042350||ISS  go_function catalytic activity|GO:0003824||ISS  product GER2; binding / catalytic/ coenzyme binding  note GER2; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: GDP-L-fucose biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: GER1 (GDP-4-KETO-6-DEOXYMANNOSE-3,5-EPIMERASE-4-REDUCTASE 1); GDP-L-fucose synthase (TAIR:AT1G73250.1); Has 18894 Blast hits to 18893 proteins in 1572 species: Archae - 373; Bacteria - 8804; Metazoa - 430; Fungi - 144; Plants - 435; Viruses - 22; Other Eukaryotes - 8686 (source: NCBI BLink).  protein_id AT1G17890.3p  transcript_id AT1G17890.3  protein_id AT1G17890.3p  transcript_id AT1G17890.3  
At1g17890	chr1:006155575	0.0	C/6155575-6155596,6154478-6155442	AT1G17890.1  CDS  gene_syn F2H15.12, F2H15_12, GER2  gene GER2  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  go_component cellular_component|GO:0005575||ND  go_process GDP-L-fucose biosynthetic process|GO:0042350||ISS  go_function catalytic activity|GO:0003824||ISS  product GER2; binding / catalytic/ coenzyme binding  note GER2; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: GDP-L-fucose biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: GER1 (GDP-4-KETO-6-DEOXYMANNOSE-3,5-EPIMERASE-4-REDUCTASE 1); GDP-L-fucose synthase (TAIR:AT1G73250.1); Has 18894 Blast hits to 18893 proteins in 1572 species: Archae - 373; Bacteria - 8804; Metazoa - 430; Fungi - 144; Plants - 435; Viruses - 22; Other Eukaryotes - 8686 (source: NCBI BLink).  protein_id AT1G17890.1p  transcript_id AT1G17890.1  protein_id AT1G17890.1p  transcript_id AT1G17890.1  
At1g17900	chr1:006157368	0.0	C/6157368-6158130	AT1G17900.1  mRNA_TE_gene  pseudo  gene_syn F2H15.23, F2H15_23  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G27590.1); similar to hypothetical protein PF10_0266 [Plasmodium falciparum 3D7] (GB:NP_700739.1)  
At1g17910	chr1:006159126	0.0	W/6159126-6160146,6160242-6160367,6160468-6161615	AT1G17910.1  CDS  gene_syn F2H15.13, F2H15_13  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function kinase activity|GO:0016301||ISS  product wall-associated kinase, putative  note wall-associated kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: wall-associated kinase, putative (TAIR:AT1G19390.1); Has 83332 Blast hits to 81993 proteins in 2492 species: Archae - 42; Bacteria - 7160; Metazoa - 36887; Fungi - 6330; Plants - 18594; Viruses - 395; Other Eukaryotes - 13924 (source: NCBI BLink).  protein_id AT1G17910.1p  transcript_id AT1G17910.1  protein_id AT1G17910.1p  transcript_id AT1G17910.1  
At1g17920	chr1:006164921	0.0	C/6164921-6165033,6164722-6164839,6164445-6164633,6163900-6164355,6163715-6163816,6163431-6163631,6163171-6163351,6162831-6163093,6162648-6162737,6162214-6162564	AT1G17920.1  CDS  gene_syn F2H15.14, F2H15_14, HDG12, HOMEODOMAIN GLABROUS 12  gene HDG12  function Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Together with HDG11, it is involved in trichome branching.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process trichome branching|GO:0010091|16778018|IGI  go_function transcription factor activity|GO:0003700|11118137|ISS  product HDG12 (HOMEODOMAIN GLABROUS 12); transcription factor  note HOMEODOMAIN GLABROUS 12 (HDG12); FUNCTIONS IN: transcription factor activity; INVOLVED IN: trichome branching, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: HDG11 (HOMEODOMAIN GLABROUS 11); DNA binding / transcription factor (TAIR:AT1G73360.1); Has 9138 Blast hits to 9081 proteins in 452 species: Archae - 0; Bacteria - 0; Metazoa - 7306; Fungi - 149; Plants - 1558; Viruses - 3; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT1G17920.1p  transcript_id AT1G17920.1  protein_id AT1G17920.1p  transcript_id AT1G17920.1  
At1g17930	chr1:006168376	0.0	C/6168376-6168432,6167632-6168279,6167373-6167525,6166918-6167298,6166638-6166835	AT1G17930.1  CDS  gene_syn F2H15.15, F2H15_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25010.1); Has 480 Blast hits to 475 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 480; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G17930.1p  transcript_id AT1G17930.1  protein_id AT1G17930.1p  transcript_id AT1G17930.1  
At1g17940	chr1:006171789	0.0	C/6171789-6172035,6171622-6171696,6171476-6171534,6171258-6171396,6171022-6171118,6170852-6170918,6170639-6170737,6170414-6170503,6169989-6170143,6169797-6169898,6169621-6169708	AT1G17940.1  CDS  gene_syn F2H15.16, F2H15_16  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: BRO1 (InterPro:IPR004328); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G73390.3); Has 75 Blast hits to 75 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 22; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G17940.1p  transcript_id AT1G17940.1  protein_id AT1G17940.1p  transcript_id AT1G17940.1  
At1g17950	chr1:006177764	0.0	W/6177764-6177881,6178002-6178427,6178858-6179063	AT1G17950.1  CDS  gene_syn ATMYB52, BW52, F2H15.17, F2H15_17, MYB DOMAIN PROTEIN 52, MYB52  gene MYB52  function putative transcription factor: R2R3-MYB transcription family  go_component nucleus|GO:0005634|18952777|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9839469|ISS  go_function transcription factor activity|GO:0003700||ISS  product MYB52 (MYB DOMAIN PROTEIN 52); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 52 (MYB52); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to abscisic acid stimulus, regulation of transcription, DNA-dependent, regulation of secondary cell wall thickening; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB54 (MYB DOMAIN PROTEIN 54); DNA binding / transcription factor (TAIR:AT1G73410.1); Has 6247 Blast hits to 5557 proteins in 367 species: Archae - 0; Bacteria - 0; Metazoa - 724; Fungi - 366; Plants - 3379; Viruses - 5; Other Eukaryotes - 1773 (source: NCBI BLink).  protein_id AT1G17950.1p  transcript_id AT1G17950.1  protein_id AT1G17950.1p  transcript_id AT1G17950.1  
At1g17960	chr1:006183607	0.0	C/6183607-6183737,6183195-6183495,6182973-6183045,6182822-6182916,6182546-6182578,6182369-6182455,6182181-6182273,6182007-6182099,6181696-6181914,6181526-6181597,6181226-6181297,6181015-6181122	AT1G17960.1  CDS  gene_syn F2H15.18, F2H15_18  go_component cytoplasm|GO:0005737||IEA  go_process translation|GO:0006412||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_process threonyl-tRNA aminoacylation|GO:0006435||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function threonine-tRNA ligase activity|GO:0004829||IEA  go_function ATP binding|GO:0005524||IEA  go_process threonyl-tRNA aminoacylation|GO:0006435||ISS  go_function threonine-tRNA ligase activity|GO:0004829||ISS  product threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative  note threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative; FUNCTIONS IN: nucleotide binding, aminoacyl-tRNA ligase activity, threonine-tRNA ligase activity, ATP binding; INVOLVED IN: threonyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: inflorescence meristem, pedicel, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain (InterPro:IPR018163), TGS-like (InterPro:IPR012676), Aminoacyl-tRNA synthetase, class II (G, H, P and S), conserved region (InterPro:IPR002314), TGS (InterPro:IPR004095), Anticodon-binding (InterPro:IPR004154), Threonyl-tRNA synthetase, class IIa, conserved region (InterPro:IPR018158), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), Aminoacyl-tRNA synthetase, class II, conserved region (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS) (TAIR:AT5G26830.1); Has 11113 Blast hits to 8230 proteins in 1616 species: Archae - 201; Bacteria - 5217; Metazoa - 467; Fungi - 241; Plants - 76; Viruses - 0; Other Eukaryotes - 4911 (source: NCBI BLink).  protein_id AT1G17960.1p  transcript_id AT1G17960.1  protein_id AT1G17960.1p  transcript_id AT1G17960.1  
At1g17970	chr1:006185032	0.0	W/6185032-6185604,6186171-6186335,6186660-6186758,6186844-6186978,6187068-6187202	AT1G17970.1  CDS  gene_syn F2H15.19, F2H15_19  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G73760.1); Has 6054 Blast hits to 6047 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 2083; Fungi - 451; Plants - 2360; Viruses - 9; Other Eukaryotes - 1151 (source: NCBI BLink).  protein_id AT1G17970.1p  transcript_id AT1G17970.1  protein_id AT1G17970.1p  transcript_id AT1G17970.1  
At1g17980	chr1:006190184	0.0	C/6190184-6190318,6189795-6189908,6189627-6189689,6189211-6189540,6188969-6189133,6188033-6188878,6187880-6187947,6187742-6187781	AT1G17980.2  CDS  gene_syn F2H15.20, F2H15_20  go_component nucleus|GO:0005634|15297145|IDA  go_process RNA polyadenylation|GO:0043631|15297145|IDA  go_function protein binding|GO:0005515|15297145|IPI  go_function nucleotidyltransferase activity|GO:0016779||ISS  product nucleotidyltransferase family protein  note nucleotidyltransferase family protein; FUNCTIONS IN: protein binding, nucleotidyltransferase activity; INVOLVED IN: RNA polyadenylation; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Poly(A) polymerase, central region (InterPro:IPR007012), Poly(A) polymerase, RNA-binding region (InterPro:IPR007010); BEST Arabidopsis thaliana protein match is: nPAP (NUCLEAR POLY(A) POLYMERASE); nucleotidyltransferase/ protein binding (TAIR:AT4G32850.9); Has 579 Blast hits to 577 proteins in 159 species: Archae - 0; Bacteria - 11; Metazoa - 234; Fungi - 128; Plants - 99; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT1G17980.2p  transcript_id AT1G17980.2  protein_id AT1G17980.2p  transcript_id AT1G17980.2  
At1g17980	chr1:006191314	0.0	C/6191314-6191418,6191107-6191184,6190900-6191007,6190435-6190497,6190184-6190345,6189795-6189908,6189627-6189689,6189211-6189540,6188969-6189133,6188033-6188878,6187880-6187947,6187742-6187781	AT1G17980.1  CDS  gene_syn F2H15.20, F2H15_20  go_component nucleus|GO:0005634|15297145|IDA  go_process RNA polyadenylation|GO:0043631|15297145|IDA  go_function protein binding|GO:0005515|15297145|IPI  go_function nucleotidyltransferase activity|GO:0016779||ISS  product nucleotidyltransferase family protein  note nucleotidyltransferase family protein; FUNCTIONS IN: protein binding, nucleotidyltransferase activity; INVOLVED IN: RNA polyadenylation; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Poly(A) polymerase, central region (InterPro:IPR007012), Nucleotidyltransferase (InterPro:IPR002934), Poly(A) polymerase, RNA-binding region (InterPro:IPR007010); BEST Arabidopsis thaliana protein match is: nPAP (NUCLEAR POLY(A) POLYMERASE); nucleotidyltransferase/ protein binding (TAIR:AT4G32850.9); Has 591 Blast hits to 589 proteins in 160 species: Archae - 0; Bacteria - 11; Metazoa - 239; Fungi - 130; Plants - 103; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT1G17980.1p  transcript_id AT1G17980.1  protein_id AT1G17980.1p  transcript_id AT1G17980.1  
At1g17990	chr1:006193688	0.0	C/6193688-6193755,6193318-6193434,6193092-6193222,6192829-6192990,6192455-6192762	AT1G17990.2  CDS  gene_syn T10F20.3  product 12-oxophytodienoate reductase, putative  note 12-oxophytodienoate reductase, putative; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), NADH:flavin oxidoreductase/NADH oxidase, N-terminal (InterPro:IPR001155); BEST Arabidopsis thaliana protein match is: 12-oxophytodienoate reductase, putative (TAIR:AT1G18020.1); Has 8050 Blast hits to 8031 proteins in 1101 species: Archae - 62; Bacteria - 5411; Metazoa - 29; Fungi - 540; Plants - 287; Viruses - 0; Other Eukaryotes - 1721 (source: NCBI BLink).  protein_id AT1G17990.2p  transcript_id AT1G17990.2  protein_id AT1G17990.2p  transcript_id AT1G17990.2  
At1g17990	chr1:006193688	0.0	C/6193688-6193755,6193318-6193458,6193092-6193222,6192829-6192990,6192455-6192762	AT1G17990.1  CDS  gene_syn T10F20.3  product 12-oxophytodienoate reductase, putative  note 12-oxophytodienoate reductase, putative; CONTAINS InterPro DOMAIN/s: NADH:flavin oxidoreductase/NADH oxidase, N-terminal (InterPro:IPR001155), Aldolase-type TIM barrel (InterPro:IPR013785); BEST Arabidopsis thaliana protein match is: 12-oxophytodienoate reductase, putative (TAIR:AT1G18020.1); Has 8099 Blast hits to 8080 proteins in 1101 species: Archae - 62; Bacteria - 5422; Metazoa - 29; Fungi - 540; Plants - 287; Viruses - 0; Other Eukaryotes - 1759 (source: NCBI BLink).  protein_id AT1G17990.1p  transcript_id AT1G17990.1  protein_id AT1G17990.1p  transcript_id AT1G17990.1  
At1g18000	chr1:006194668	0.0	C/6194668-6196047	AT1G18000.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF895, eukaryotic (InterPro:IPR010291), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G18010.1); Has 489 Blast hits to 485 proteins in 115 species: Archae - 0; Bacteria - 49; Metazoa - 129; Fungi - 254; Plants - 41; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G18000.1p  transcript_id AT1G18000.1  protein_id AT1G18000.1p  transcript_id AT1G18000.1  
At1g18010	chr1:006199980	0.0	W/6199980-6201359	AT1G18010.1  CDS  gene_syn T10F20.2, T10F20_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF895, eukaryotic (InterPro:IPR010291), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G18000.1); Has 489 Blast hits to 485 proteins in 115 species: Archae - 0; Bacteria - 49; Metazoa - 129; Fungi - 254; Plants - 41; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G18010.1p  transcript_id AT1G18010.1  protein_id AT1G18010.1p  transcript_id AT1G18010.1  
At1g18020	chr1:006202272	0.0	W/6202272-6202339,6202569-6202709,6202805-6202935,6203037-6203198,6203265-6203572	AT1G18020.1  CDS  product 12-oxophytodienoate reductase, putative  note 12-oxophytodienoate reductase, putative; CONTAINS InterPro DOMAIN/s: NADH:flavin oxidoreductase/NADH oxidase, N-terminal (InterPro:IPR001155), Aldolase-type TIM barrel (InterPro:IPR013785); BEST Arabidopsis thaliana protein match is: 12-oxophytodienoate reductase, putative (TAIR:AT1G17990.1); Has 8099 Blast hits to 8080 proteins in 1101 species: Archae - 62; Bacteria - 5422; Metazoa - 29; Fungi - 540; Plants - 287; Viruses - 0; Other Eukaryotes - 1759 (source: NCBI BLink).  protein_id AT1G18020.1p  transcript_id AT1G18020.1  protein_id AT1G18020.1p  transcript_id AT1G18020.1  
At1g18030	chr1:006204400	0.0	W/6204400-6204716,6204877-6204985,6205087-6205123,6205230-6205274,6205435-6205487,6205602-6205763,6205849-6205932,6206125-6206214,6206320-6206367,6206568-6206678	AT1G18030.1  CDS  gene_syn T10F20.4, T10F20_4  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT2G25620.1); Has 4082 Blast hits to 4070 proteins in 241 species: Archae - 3; Bacteria - 20; Metazoa - 1276; Fungi - 498; Plants - 1296; Viruses - 9; Other Eukaryotes - 980 (source: NCBI BLink).  protein_id AT1G18030.1p  transcript_id AT1G18030.1  protein_id AT1G18030.1p  transcript_id AT1G18030.1  
At1g18030	chr1:006204400	0.0	W/6204400-6204716,6204877-6204985,6205087-6205123,6205230-6205274,6205435-6205487,6205602-6205763,6205849-6205932,6206125-6206218,6206320-6206336	AT1G18030.2  CDS  gene_syn T10F20.4, T10F20_4  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT3G51470.1); Has 3857 Blast hits to 3850 proteins in 232 species: Archae - 2; Bacteria - 6; Metazoa - 1177; Fungi - 448; Plants - 1270; Viruses - 9; Other Eukaryotes - 945 (source: NCBI BLink).  protein_id AT1G18030.2p  transcript_id AT1G18030.2  protein_id AT1G18030.2p  transcript_id AT1G18030.2  
At1g18040	chr1:006209201	0.0	C/6209201-6209299,6208757-6209055,6208562-6208670,6208007-6208132,6207618-6207853,6207281-6207538,6207128-6207176	AT1G18040.1  CDS  gene_syn AT;CDCKD;3, CAK2AT, CDKD1;3, CYCLIN-DEPENDENT KINASE D1;3, T10F20.5, T10F20_5  gene CDKD1;3  go_component nucleus|GO:0005634|15610358|IDA  go_process regulation of cell cycle|GO:0051726|16024551|TAS  go_function protein kinase activity|GO:0004672|16024551|TAS  go_function kinase activity|GO:0016301||ISS  product CDKD1;3 (CYCLIN-DEPENDENT KINASE D1;3); kinase/ protein kinase  note CYCLIN-DEPENDENT KINASE D1;3 (CDKD1;3); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CDKD1;1 (CYCLIN-DEPENDENT KINASE D1;1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT1G73690.1); Has 86988 Blast hits to 85857 proteins in 2791 species: Archae - 31; Bacteria - 7397; Metazoa - 37676; Fungi - 8140; Plants - 16874; Viruses - 362; Other Eukaryotes - 16508 (source: NCBI BLink).  protein_id AT1G18040.1p  transcript_id AT1G18040.1  protein_id AT1G18040.1p  transcript_id AT1G18040.1  
At1g18050	chr1:006211266	0.0	C/6211266-6211588,6210485-6210555,6210030-6210242,6209771-6210021	AT1G18050.1  CDS  gene_syn T10F20.6  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process RNA processing|GO:0006396||ISS  go_function RNA binding|GO:0003723||ISS  product SWAP (Suppressor-of-White-APricot)/surp domain-containing protein  note SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061), Transposase, MuDR, plant (InterPro:IPR004332); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G30370.1); Has 171 Blast hits to 170 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 109; Fungi - 9; Plants - 42; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G18050.1p  transcript_id AT1G18050.1  protein_id AT1G18050.1p  transcript_id AT1G18050.1  
At1g18060	chr1:006213168	0.0	C/6213168-6213314,6212650-6212832,6212485-6212544,6212065-6212355	AT1G18060.1  CDS  gene_syn T10F20.7  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 38 Blast hits to 38 proteins in 16 species: Archae - 0; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G18060.1p  transcript_id AT1G18060.1  protein_id AT1G18060.1p  transcript_id AT1G18060.1  
At1g18070	chr1:006218208	0.0	C/6218208-6218211,6217737-6217778,6217580-6217654,6217453-6217503,6217294-6217347,6217081-6217185,6216758-6216869,6216629-6216674,6216415-6216486,6216227-6216289,6215979-6216133,6215827-6215891,6215593-6215743,6215239-6215344,6215018-6215153,6214830-6214894,6214585-6214749,6214378-6214450,6214236-6214294	AT1G18070.1  CDS  gene_syn T10F20.8  go_component vacuole|GO:0005773|15539469|IDA  go_process translational termination|GO:0006415||IEA  go_function translation release factor activity|GO:0003747||IEA  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_function translation factor activity, nucleic acid binding|GO:0008135||ISS  product EF-1-alpha-related GTP-binding protein, putative  note EF-1-alpha-related GTP-binding protein, putative; FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, translation release factor activity, GTPase activity; INVOLVED IN: translational termination; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000), Yeast eukaryotic release factor (InterPro:IPR003285); BEST Arabidopsis thaliana protein match is: elongation factor 1-alpha / EF-1-alpha (TAIR:AT5G60390.3); Has 54271 Blast hits to 54210 proteins in 13560 species: Archae - 559; Bacteria - 19088; Metazoa - 14337; Fungi - 8307; Plants - 1150; Viruses - 0; Other Eukaryotes - 10830 (source: NCBI BLink).  protein_id AT1G18070.1p  transcript_id AT1G18070.1  protein_id AT1G18070.1p  transcript_id AT1G18070.1  
At1g18070	chr1:006218208	0.0	C/6218208-6218211,6217737-6217778,6217580-6217654,6217453-6217503,6217294-6217347,6217081-6217185,6216758-6216869,6216629-6216674,6216415-6216486,6216227-6216289,6215979-6216133,6215827-6215891,6215593-6215743,6215239-6215344,6215018-6215153,6214830-6214894,6214585-6214749,6214378-6214450,6214236-6214294	AT1G18070.2  CDS  gene_syn T10F20.8  go_component vacuole|GO:0005773|15539469|IDA  go_process translational termination|GO:0006415||IEA  go_function translation release factor activity|GO:0003747||IEA  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_function translation factor activity, nucleic acid binding|GO:0008135||ISS  product EF-1-alpha-related GTP-binding protein, putative  note EF-1-alpha-related GTP-binding protein, putative; FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, translation release factor activity, GTPase activity; INVOLVED IN: translational termination; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000), Yeast eukaryotic release factor (InterPro:IPR003285); BEST Arabidopsis thaliana protein match is: elongation factor 1-alpha / EF-1-alpha (TAIR:AT5G60390.3); Has 54271 Blast hits to 54210 proteins in 13560 species: Archae - 559; Bacteria - 19088; Metazoa - 14337; Fungi - 8307; Plants - 1150; Viruses - 0; Other Eukaryotes - 10830 (source: NCBI BLink).  protein_id AT1G18070.2p  transcript_id AT1G18070.2  protein_id AT1G18070.2p  transcript_id AT1G18070.2  
At1g18075	chr1:006220648	0.0	W/6220648-6220833	AT1G18075.1  miRNA  gene_syn MICRORNA 159, MICRORNA 159B, MIR159, MIR159B  gene MIR159B  function Encodes a microRNA that targets several MYB family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUUGGAUUGAAGGGAGCUCUU. Functions redundantly with MIR159A. Plants that are doubly mutated for MIR159AB have curled leaves and reduced stature.  go_component cellular_component|GO:0005575||ND  go_process response to abscisic acid stimulus|GO:0009737|17217461|IEP  go_process negative regulation of abscisic acid mediated signaling|GO:0009788|17217461|IMP  go_process gene silencing by miRNA|GO:0035195|15200956|TAS  go_function molecular_function|GO:0003674||ND  product MIR159B (MICRORNA 159B); miRNA  transcript_id AT1G18075.1  
At1g18080	chr1:006222325	0.0	W/6222325-6223206,6223800-6223901	AT1G18080.1  CDS  gene_syn ATARCA, RACK1A_AT, RECEPTOR FOR ACTIVATED C KINASE 1 A, T10F20.9, WD-40 REPEAT PROTEIN ATARCA  gene ATARCA  function Encodes the Arabidopsis thaliana homolog of the tobacco WD-40 repeat ArcA gene.  go_component chloroplast|GO:0009507|18431481|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_function nucleotide binding|GO:0000166||ISS  product ATARCA; nucleotide binding  note ATARCA; FUNCTIONS IN: nucleotide binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosolic ribosome, chloroplast, heterotrimeric G-protein complex; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: RACK1B_AT (RECEPTOR FOR ACTIVATED C KINASE 1 B); nucleotide binding (TAIR:AT1G48630.1); Has 63702 Blast hits to 26655 proteins in 706 species: Archae - 76; Bacteria - 6668; Metazoa - 29017; Fungi - 12763; Plants - 6041; Viruses - 3; Other Eukaryotes - 9134 (source: NCBI BLink).  protein_id AT1G18080.1p  transcript_id AT1G18080.1  protein_id AT1G18080.1p  transcript_id AT1G18080.1  
At1g18090	chr1:006224539	0.0	W/6224539-6224616,6224751-6224787,6224974-6225148,6225246-6225324,6225744-6225788,6225866-6226015,6226114-6226228,6226314-6226414,6226500-6226597,6226681-6226773,6226953-6227715	AT1G18090.1  CDS  gene_syn T10F20.10  go_process DNA repair|GO:0006281||IEA  go_function DNA binding|GO:0003677||IEA  go_function catalytic activity|GO:0003824||IEA  go_function nuclease activity|GO:0004518||IEA  go_component cellular_component|GO:0005575||ND  go_process DNA repair|GO:0006281||ISS  go_function nuclease activity|GO:0004518||ISS  product exonuclease, putative  note exonuclease, putative; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG I (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: DNA binding / catalytic/ nuclease (TAIR:AT1G29630.2); Has 1583 Blast hits to 1522 proteins in 278 species: Archae - 183; Bacteria - 44; Metazoa - 445; Fungi - 375; Plants - 105; Viruses - 12; Other Eukaryotes - 419 (source: NCBI BLink).  protein_id AT1G18090.1p  transcript_id AT1G18090.1  protein_id AT1G18090.1p  transcript_id AT1G18090.1  
At1g18090	chr1:006224539	0.0	W/6224539-6224616,6224751-6224787,6224974-6225152,6225250-6225324,6225744-6225788,6225866-6226015,6226114-6226228,6226314-6226414,6226500-6226597,6226681-6226773,6226953-6227715	AT1G18090.2  CDS  gene_syn T10F20.10  go_process DNA repair|GO:0006281||IEA  go_function DNA binding|GO:0003677||IEA  go_function catalytic activity|GO:0003824||IEA  go_function nuclease activity|GO:0004518||IEA  go_component cellular_component|GO:0005575||ND  go_process DNA repair|GO:0006281||ISS  go_function nuclease activity|GO:0004518||ISS  product exonuclease, putative  note exonuclease, putative; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG I (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: DNA binding / catalytic/ nuclease (TAIR:AT1G29630.2); Has 1586 Blast hits to 1523 proteins in 279 species: Archae - 183; Bacteria - 46; Metazoa - 450; Fungi - 373; Plants - 103; Viruses - 12; Other Eukaryotes - 419 (source: NCBI BLink).  protein_id AT1G18090.2p  transcript_id AT1G18090.2  protein_id AT1G18090.2p  transcript_id AT1G18090.2  
At1g18100	chr1:006229916	0.0	C/6229916-6230110,6229292-6229353,6229125-6229165,6228049-6228272	AT1G18100.1  CDS  gene_syn E12A11, T10F20.11  gene E12A11  function E12A11 protein (E12A11)  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function phosphatidylethanolamine binding|GO:0008429||ISS  product E12A11; phosphatidylethanolamine binding  note E12A11; FUNCTIONS IN: phosphatidylethanolamine binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Phosphatidylethanolamine-binding, conserved site (InterPro:IPR001858), Phosphatidylethanolamine-binding protein PEBP (InterPro:IPR008914); BEST Arabidopsis thaliana protein match is: TFL1 (TERMINAL FLOWER 1); phosphatidylethanolamine binding (TAIR:AT5G03840.1); Has 1445 Blast hits to 1445 proteins in 267 species: Archae - 0; Bacteria - 83; Metazoa - 583; Fungi - 128; Plants - 634; Viruses - 3; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G18100.1p  transcript_id AT1G18100.1  protein_id AT1G18100.1p  transcript_id AT1G18100.1  
At1g18120	chr1:006232092	0.0	W/6232092-6233926	AT1G18120.1  pseudogenic_transcript  pseudo  gene_syn T10F20.12  note pseudogene, putative myrosinase-associated protein, blastp match of 46% identity and 1.7e-57 P-value to GP|6522943|emb|CAB62165.1||AJ223307 myrosinase-associated protein {Brassica napus}  
At1g18130	chr1:006235895	0.0	W/6235895-6235942,6238093-6238314,6238410-6238481,6238567-6238638,6238716-6238799	AT1G18130.1  CDS  gene_syn T10F20.13  go_component membrane|GO:0016020|17432890|IDA  go_process translation|GO:0006412||IEA  go_process threonyl-tRNA aminoacylation|GO:0006435||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function threonine-tRNA ligase activity|GO:0004829||IEA  go_function ATP binding|GO:0005524||IEA  go_process translation|GO:0006412||ISS  go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS  go_function ATP binding|GO:0005524||ISS  product tRNA synthetase-related / tRNA ligase-related  note tRNA synthetase-related / tRNA ligase-related; FUNCTIONS IN: threonine-tRNA ligase activity, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: threonyl-tRNA aminoacylation, translation; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Anticodon-binding (InterPro:IPR004154), Threonyl-tRNA synthetase, class IIa, conserved region (InterPro:IPR018158); BEST Arabidopsis thaliana protein match is: threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS) (TAIR:AT5G26830.1); Has 5832 Blast hits to 5832 proteins in 1604 species: Archae - 175; Bacteria - 2990; Metazoa - 217; Fungi - 159; Plants - 49; Viruses - 0; Other Eukaryotes - 2242 (source: NCBI BLink).  protein_id AT1G18130.1p  transcript_id AT1G18130.1  protein_id AT1G18130.1p  transcript_id AT1G18130.1  
At1g18140	chr1:006241292	0.0	C/6241292-6241393,6240911-6241062,6240564-6240808,6240205-6240333,6238986-6240103	AT1G18140.1  CDS  gene_syn LAC1, Laccase 1, T10F20.14  gene LAC1  function putative laccase, a member of laccase family of genes (with 17 members in Arabidopsis).  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process lignin catabolic process|GO:0046274||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function laccase activity|GO:0008471|15940465|ISS  product LAC1 (Laccase 1); laccase  note Laccase 1 (LAC1); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: LAC17 (laccase 17); laccase (TAIR:AT5G60020.1); Has 6940 Blast hits to 5714 proteins in 956 species: Archae - 24; Bacteria - 2468; Metazoa - 445; Fungi - 2753; Plants - 889; Viruses - 0; Other Eukaryotes - 361 (source: NCBI BLink).  protein_id AT1G18140.1p  transcript_id AT1G18140.1  protein_id AT1G18140.1p  transcript_id AT1G18140.1  
At1g18150	chr1:006247316	0.0	C/6247316-6247582,6246686-6247088,6246466-6246593,6246304-6246363,6245996-6246145,6245728-6245883,6245499-6245636,6245311-6245384,6245107-6245223,6244818-6245016,6244641-6244718	AT1G18150.1  CDS  gene_syn ATMPK8, T10F20.15  gene ATMPK8  function ATMPK8,  go_component plasma membrane|GO:0005886|17317660|IDA  go_process signal transduction|GO:0007165|12119167|IC  go_function MAP kinase activity|GO:0004707|11544109|ISS  go_function MAP kinase activity|GO:0004707|12119167|ISS  product ATMPK8; MAP kinase  note ATMPK8; FUNCTIONS IN: MAP kinase activity; INVOLVED IN: signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATMPK15; MAP kinase/ kinase (TAIR:AT1G73670.1); Has 88039 Blast hits to 87011 proteins in 2587 species: Archae - 43; Bacteria - 7629; Metazoa - 38255; Fungi - 8102; Plants - 16752; Viruses - 530; Other Eukaryotes - 16728 (source: NCBI BLink).  protein_id AT1G18150.1p  transcript_id AT1G18150.1  protein_id AT1G18150.1p  transcript_id AT1G18150.1  
At1g18150	chr1:006247316	0.0	C/6247316-6247582,6246686-6247088,6246466-6246593,6246304-6246363,6245996-6246145,6245728-6245883,6245499-6245636,6245311-6245384,6245107-6245223,6244818-6245016,6244641-6244718	AT1G18150.2  CDS  gene_syn ATMPK8, T10F20.15  gene ATMPK8  function ATMPK8,  go_component plasma membrane|GO:0005886|17317660|IDA  go_process signal transduction|GO:0007165|12119167|IC  go_function MAP kinase activity|GO:0004707|11544109|ISS  go_function MAP kinase activity|GO:0004707|12119167|ISS  product ATMPK8; MAP kinase  note ATMPK8; FUNCTIONS IN: MAP kinase activity; INVOLVED IN: signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATMPK15; MAP kinase/ kinase (TAIR:AT1G73670.1); Has 88039 Blast hits to 87011 proteins in 2587 species: Archae - 43; Bacteria - 7629; Metazoa - 38255; Fungi - 8102; Plants - 16752; Viruses - 530; Other Eukaryotes - 16728 (source: NCBI BLink).  protein_id AT1G18150.2p  transcript_id AT1G18150.2  protein_id AT1G18150.2p  transcript_id AT1G18150.2  
At1g18160	chr1:006249126	0.0	W/6249126-6249614,6249771-6250211,6250437-6250540,6250893-6252028,6252106-6252146,6252253-6252321,6252404-6252504,6252695-6252773,6252871-6252969,6253040-6253108,6253309-6253358,6253451-6253627,6253712-6253835	AT1G18160.1  CDS  gene_syn T10F20.16  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G73660.1); Has 89958 Blast hits to 88675 proteins in 3367 species: Archae - 41; Bacteria - 7257; Metazoa - 40465; Fungi - 7352; Plants - 18895; Viruses - 448; Other Eukaryotes - 15500 (source: NCBI BLink).  protein_id AT1G18160.1p  transcript_id AT1G18160.1  protein_id AT1G18160.1p  transcript_id AT1G18160.1  
At1g18170	chr1:006254291	0.0	W/6254291-6254622,6254769-6254813,6255141-6255507	AT1G18170.1  CDS  gene_syn T10F20.17  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process protein folding|GO:0006457||IEA  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  go_function FK506 binding|GO:0005528||ISS  product immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein  note immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FK506 binding / peptidyl-prolyl cis-trans isomerase (TAIR:AT1G73655.1); Has 1824 Blast hits to 1811 proteins in 560 species: Archae - 0; Bacteria - 910; Metazoa - 249; Fungi - 61; Plants - 245; Viruses - 0; Other Eukaryotes - 359 (source: NCBI BLink).  protein_id AT1G18170.1p  transcript_id AT1G18170.1  protein_id AT1G18170.1p  transcript_id AT1G18170.1  
At1g18180	chr1:006255903	0.0	W/6255903-6255953,6256053-6256122,6256259-6256326,6256402-6256463,6256563-6256644,6256761-6256994,6257103-6257231,6257319-6257380,6257477-6257593,6257695-6257737	AT1G18180.1  CDS  gene_syn T10F20.18  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function oxidoreductase activity, acting on the CH-CH group of donors|GO:0016627||IEA  product oxidoreductase, acting on the CH-CH group of donors  note oxidoreductase, acting on the CH-CH group of donors; FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors; INVOLVED IN: lipid metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal (InterPro:IPR001104), Protein of unknown function DUF1295 (InterPro:IPR010721); BEST Arabidopsis thaliana protein match is: oxidoreductase, acting on the CH-CH group of donors (TAIR:AT1G73650.3); Has 1695 Blast hits to 1695 proteins in 205 species: Archae - 0; Bacteria - 274; Metazoa - 71; Fungi - 102; Plants - 57; Viruses - 0; Other Eukaryotes - 1191 (source: NCBI BLink).  protein_id AT1G18180.1p  transcript_id AT1G18180.1  protein_id AT1G18180.1p  transcript_id AT1G18180.1  
At1g18190	chr1:006261272	0.0	C/6261272-6261325,6259875-6260912,6259650-6259760,6259478-6259537,6259195-6259252,6259011-6259063,6258812-6258904,6258552-6258677,6258415-6258462,6257963-6258328	AT1G18190.1  CDS  gene_syn GC2, T10F20.19, golgin candidate 2  gene GC2  function This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC2 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (508 668 aa) portion of the protein.  go_component Golgi apparatus|GO:0005794|18182439|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product GC2 (golgin candidate 2)  note golgin candidate 2 (GC2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: GC1 (Golgin Candidate 1) (TAIR:AT2G19950.1); Has 42131 Blast hits to 26494 proteins in 1346 species: Archae - 317; Bacteria - 4238; Metazoa - 22451; Fungi - 3348; Plants - 1430; Viruses - 148; Other Eukaryotes - 10199 (source: NCBI BLink).  protein_id AT1G18190.1p  transcript_id AT1G18190.1  protein_id AT1G18190.1p  transcript_id AT1G18190.1  
At1g18191	chr1:006262054	0.0	C/6262054-6262330	AT1G18191.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G18200; AtRABA6b (Arabidopsis Rab GTPase homolog A6b); GTP binding  
At1g18200	chr1:006266439	0.0	C/6266439-6266659,6265416-6265884	AT1G18200.1  CDS  gene_syn Arabidopsis Rab GTPase homolog A6b, AtRABA6b, T10F20.21  gene AtRABA6b  go_component intracellular|GO:0005622||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process nucleocytoplasmic transport|GO:0006913||IEA  go_process signal transduction|GO:0007165||IEA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTPase activity|GO:0003924||IEA  go_function protein binding|GO:0005515||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product AtRABA6b (Arabidopsis Rab GTPase homolog A6b); GTP binding / GTPase/ protein binding  note Arabidopsis Rab GTPase homolog A6b (AtRABA6b); FUNCTIONS IN: protein binding, GTP binding, GTPase activity; INVOLVED IN: intracellular protein transport, signal transduction, nucleocytoplasmic transport, protein transport, small GTPase mediated signal transduction; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Rab11-related (InterPro:IPR015595), Ras small GTPase, Rho type (InterPro:IPR003578), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: AtRABA6a (Arabidopsis Rab GTPase homolog A6a); GTP binding (TAIR:AT1G73640.1); Has 21926 Blast hits to 21897 proteins in 616 species: Archae - 19; Bacteria - 105; Metazoa - 12261; Fungi - 2548; Plants - 2001; Viruses - 19; Other Eukaryotes - 4973 (source: NCBI BLink).  protein_id AT1G18200.1p  transcript_id AT1G18200.1  protein_id AT1G18200.1p  transcript_id AT1G18200.1  
At1g18210	chr1:006268273	0.0	C/6268273-6268785	AT1G18210.1  CDS  gene_syn T10F20.22  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function calcium ion binding|GO:0005509||IEA  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding protein, putative  note calcium-binding protein, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding protein, putative (TAIR:AT1G73630.1); Has 20845 Blast hits to 12588 proteins in 1300 species: Archae - 0; Bacteria - 141; Metazoa - 8532; Fungi - 4979; Plants - 3879; Viruses - 0; Other Eukaryotes - 3314 (source: NCBI BLink).  protein_id AT1G18210.1p  transcript_id AT1G18210.1  protein_id AT1G18210.1p  transcript_id AT1G18210.1  
At1g18210	chr1:006268273	0.0	C/6268273-6268785	AT1G18210.2  CDS  gene_syn T10F20.22  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function calcium ion binding|GO:0005509||IEA  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding protein, putative  note calcium-binding protein, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding protein, putative (TAIR:AT1G73630.1); Has 20845 Blast hits to 12588 proteins in 1300 species: Archae - 0; Bacteria - 141; Metazoa - 8532; Fungi - 4979; Plants - 3879; Viruses - 0; Other Eukaryotes - 3314 (source: NCBI BLink).  protein_id AT1G18210.2p  transcript_id AT1G18210.2  protein_id AT1G18210.2p  transcript_id AT1G18210.2  
At1g18220	chr1:006269670	0.0	C/6269670-6269807	AT1G18220.1  CDS  gene_syn ATPUP9, T10F20.24  gene ATPUP9  function Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.  go_component membrane|GO:0016020|10662864|TAS  go_process purine transport|GO:0006863|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345|10662864|TAS  product ATPUP9; purine transmembrane transporter  note ATPUP9; FUNCTIONS IN: purine transmembrane transporter activity; INVOLVED IN: purine transport; LOCATED IN: membrane; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G18220.1p  transcript_id AT1G18220.1  protein_id AT1G18220.1p  transcript_id AT1G18220.1  
At1g18230	chr1:006272666	0.0	C/6272666-6273307	AT1G18230.1  pseudogenic_transcript  pseudo  gene_syn T10F20.25  note pseudogene, putative protein kinase  
At1g18240	chr1:006274286	0.0	C/6274286-6275594	AT1G18240.1  mRNA_TE_gene  pseudo  gene_syn T10F20.23  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 1.2e-154 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At1g18250	chr1:006277948	0.0	C/6277948-6278005,6277452-6277776,6277024-6277372	AT1G18250.1  CDS  gene_syn ATLP-1  gene ATLP-1  function encodes a thaumatin-like protein  go_component endomembrane system|GO:0012505||IEA  go_process response to other organism|GO:0051707||ISS  product ATLP-1  note ATLP-1; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: thaumatin-like protein, putative / pathogenesis-related protein, putative (TAIR:AT1G73620.1); Has 1038 Blast hits to 1028 proteins in 140 species: Archae - 0; Bacteria - 14; Metazoa - 47; Fungi - 49; Plants - 919; Viruses - 2; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G18250.1p  transcript_id AT1G18250.1  protein_id AT1G18250.1p  transcript_id AT1G18250.1  
At1g18250	chr1:006277948	0.0	C/6277948-6278005,6277452-6277779,6277024-6277372	AT1G18250.2  CDS  gene_syn ATLP-1  gene ATLP-1  function encodes a thaumatin-like protein  go_component endomembrane system|GO:0012505||IEA  go_process response to other organism|GO:0051707||ISS  product ATLP-1  note ATLP-1; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: thaumatin-like protein, putative / pathogenesis-related protein, putative (TAIR:AT1G73620.1); Has 1040 Blast hits to 1028 proteins in 140 species: Archae - 0; Bacteria - 14; Metazoa - 47; Fungi - 49; Plants - 921; Viruses - 2; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G18250.2p  transcript_id AT1G18250.2  protein_id AT1G18250.2p  transcript_id AT1G18250.2  
At1g18260	chr1:006281487	0.0	C/6281487-6282008,6280908-6281399,6280603-6280818,6279772-6280095,6279391-6279633,6279047-6279286	AT1G18260.1  CDS  gene_syn T10O22.22, T10O22_22  go_component membrane|GO:0016020|17432890|IDA  go_function binding|GO:0005488||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  product suppressor of lin-12-like protein-related / sel-1 protein-related  note suppressor of lin-12-like protein-related / sel-1 protein-related; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: suppressor of lin-12-like protein-related / sel-1 protein-related (TAIR:AT1G73570.1); Has 15581 Blast hits to 5419 proteins in 820 species: Archae - 0; Bacteria - 9844; Metazoa - 747; Fungi - 658; Plants - 84; Viruses - 27; Other Eukaryotes - 4221 (source: NCBI BLink).  protein_id AT1G18260.1p  transcript_id AT1G18260.1  protein_id AT1G18260.1p  transcript_id AT1G18260.1  
At1g18265	chr1:006282338	0.0	C/6282338-6283180	AT1G18265.1  CDS  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); Has 1468 Blast hits to 1313 proteins in 94 species: Archae - 2; Bacteria - 30; Metazoa - 135; Fungi - 39; Plants - 179; Viruses - 36; Other Eukaryotes - 1047 (source: NCBI BLink).  protein_id AT1G18265.1p  transcript_id AT1G18265.1  protein_id AT1G18265.1p  transcript_id AT1G18265.1  
At1g18270	chr1:006293677	0.0	C/6293677-6293772,6293296-6293371,6292980-6293060,6292812-6292892,6292630-6292706,6292448-6292502,6292306-6292354,6291925-6292062,6291466-6291544,6291208-6291286,6291073-6291119,6290744-6290938,6290245-6290320,6290021-6290101,6289865-6289945,6289604-6289680,6289486-6289540,6289350-6289398,6289112-6289249,6288768-6288849,6288615-6288693,6288305-6288351,6287911-6288122,6287668-6287755,6287424-6287543,6287199-6287317,6287005-6287077,6286798-6286917,6286591-6286659,6286299-6286469,6286159-6286206,6285924-6286065,6285729-6285826,6285447-6285591,6285279-6285364,6285096-6285206,6284888-6284962,6284618-6284683,6284335-6284523,6284132-6284239,6283970-6284050,6283634-6283816	AT1G18270.1  CDS  gene_syn T10O22.24, T10O22_24  go_component nucleus|GO:0005634|14617066|IDA  go_process glycolysis|GO:0006096||IEA  go_process pentose-phosphate shunt|GO:0006098||IEA  go_process valine metabolic process|GO:0006573||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function fructose-bisphosphate aldolase activity|GO:0004332||IEA  go_function phosphogluconate dehydrogenase (decarboxylating) activity|GO:0004616||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function 3-hydroxyisobutyrate dehydrogenase activity|GO:0008442||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function coenzyme binding|GO:0050662||IEA  go_process glycolysis|GO:0006096||ISS  go_function fructose-bisphosphate aldolase activity|GO:0004332||ISS  product ketose-bisphosphate aldolase class-II family protein  note ketose-bisphosphate aldolase class-II family protein; FUNCTIONS IN: in 8 functions; INVOLVED IN: pentose-phosphate shunt, valine metabolic process, glycolysis, metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), Ketose-bisphosphate aldolase, class-II (InterPro:IPR000771), 3-hydroxyacid dehydrogenase/reductase (InterPro:IPR015815), NAD(P)-binding (InterPro:IPR016040), 3-hydroxyisobutyrate dehydrogenase-related, conserved site (InterPro:IPR002204); BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein (TAIR:AT1G71170.1); Has 23734 Blast hits to 15244 proteins in 1514 species: Archae - 155; Bacteria - 12217; Metazoa - 512; Fungi - 517; Plants - 221; Viruses - 0; Other Eukaryotes - 10112 (source: NCBI BLink).  protein_id AT1G18270.1p  transcript_id AT1G18270.1  protein_id AT1G18270.1p  transcript_id AT1G18270.1  
At1g18270	chr1:006293677	0.0	C/6293677-6293772,6293296-6293371,6292980-6293063,6292812-6292892,6292630-6292706,6292448-6292502,6292306-6292354,6291925-6292062,6291466-6291544,6291208-6291286,6291073-6291119,6290744-6290938,6290245-6290320,6290021-6290101,6289865-6289945,6289604-6289680,6289486-6289540,6289350-6289398,6289112-6289249,6288768-6288849,6288615-6288693,6288305-6288351,6287911-6288122,6287668-6287755,6287424-6287543,6287199-6287317,6287005-6287077,6286798-6286917,6286591-6286659,6286299-6286469,6286159-6286206,6285924-6286065,6285729-6285826,6285447-6285591,6285279-6285364,6285096-6285206,6284888-6284962,6284618-6284683,6284335-6284523,6284132-6284239,6283970-6284050,6283634-6283816	AT1G18270.2  CDS  gene_syn T10O22.24, T10O22_24  go_process glycolysis|GO:0006096||IEA  go_process pentose-phosphate shunt|GO:0006098||IEA  go_process valine metabolic process|GO:0006573||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function fructose-bisphosphate aldolase activity|GO:0004332||IEA  go_function phosphogluconate dehydrogenase (decarboxylating) activity|GO:0004616||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function 3-hydroxyisobutyrate dehydrogenase activity|GO:0008442||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function coenzyme binding|GO:0050662||IEA  go_process glycolysis|GO:0006096||ISS  go_function fructose-bisphosphate aldolase activity|GO:0004332||ISS  product ketose-bisphosphate aldolase class-II family protein  note ketose-bisphosphate aldolase class-II family protein; FUNCTIONS IN: in 8 functions; INVOLVED IN: pentose-phosphate shunt, valine metabolic process, glycolysis, metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), Ketose-bisphosphate aldolase, class-II (InterPro:IPR000771), 3-hydroxyacid dehydrogenase/reductase (InterPro:IPR015815), NAD(P)-binding (InterPro:IPR016040), 3-hydroxyisobutyrate dehydrogenase-related, conserved site (InterPro:IPR002204); BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein (TAIR:AT1G71170.1); Has 23566 Blast hits to 15271 proteins in 1513 species: Archae - 155; Bacteria - 12191; Metazoa - 519; Fungi - 517; Plants - 221; Viruses - 0; Other Eukaryotes - 9963 (source: NCBI BLink).  protein_id AT1G18270.2p  transcript_id AT1G18270.2  protein_id AT1G18270.2p  transcript_id AT1G18270.2  
At1g18280	chr1:006294403	0.0	W/6294403-6294754,6294875-6294940,6295083-6295207	AT1G18280.1  CDS  gene_syn T10O22.25, T10O22_25  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT1G73560.1); Has 322 Blast hits to 320 proteins in 21 species: Archae - 0; Bacteria - 3; Metazoa - 3; Fungi - 0; Plants - 312; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G18280.1p  transcript_id AT1G18280.1  protein_id AT1G18280.1p  transcript_id AT1G18280.1  
At1g18290	chr1:006297436	0.0	W/6297436-6297966	AT1G18290.1  CDS  gene_syn F15H18.19  go_component chloroplast|GO:0009507||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: root; Has 43 Blast hits to 43 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G18290.1p  transcript_id AT1G18290.1  protein_id AT1G18290.1p  transcript_id AT1G18290.1  
At1g18300	chr1:006299841	0.0	W/6299841-6300031,6300367-6300799	AT1G18300.1  CDS  gene_syn Arabidopsis thaliana Nudix hydrolase homolog 4, F15H18.18, atnudt4  gene atnudt4  go_component cytosol|GO:0005829|15878881|RCA  go_function hydrolase activity|GO:0016787||IEA  go_function hydrolase activity|GO:0016787||ISS  product atnudt4 (Arabidopsis thaliana Nudix hydrolase homolog 4); hydrolase  note Arabidopsis thaliana Nudix hydrolase homolog 4 (atnudt4); FUNCTIONS IN: hydrolase activity; LOCATED IN: cytosol; EXPRESSED IN: stem, root, leaf; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), NUDIX hydrolase, core (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: atnudt21 (Arabidopsis thaliana Nudix hydrolase homolog 21); hydrolase (TAIR:AT1G73540.1); Has 801 Blast hits to 799 proteins in 226 species: Archae - 1; Bacteria - 254; Metazoa - 216; Fungi - 81; Plants - 132; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT1G18300.1p  transcript_id AT1G18300.1  protein_id AT1G18300.1p  transcript_id AT1G18300.1  
At1g18310	chr1:006303562	0.0	C/6303562-6303956,6303165-6303490,6301783-6302669,6301423-6301578,6301200-6301385	AT1G18310.1  CDS  gene_syn F15H18.17, F15H18_17  go_process cell wall macromolecule catabolic process|GO:0016998||IEA  go_function endo-1,3(4)-beta-glucanase activity|GO:0033903||IEA  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product glycosyl hydrolase family 81 protein  note glycosyl hydrolase family 81 protein; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, endo-1,3(4)-beta-glucanase activity; INVOLVED IN: cell wall macromolecule catabolic process; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 81 (InterPro:IPR005200); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 81 protein (TAIR:AT5G15870.1); Has 263 Blast hits to 258 proteins in 83 species: Archae - 0; Bacteria - 38; Metazoa - 4; Fungi - 118; Plants - 29; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT1G18310.1p  transcript_id AT1G18310.1  protein_id AT1G18310.1p  transcript_id AT1G18310.1  
At1g18320	chr1:006304472	0.0	W/6304472-6304550,6304916-6304994,6305034-6305106,6305217-6305289,6305446-6305531	AT1G18320.1  CDS  gene_syn F15H18.28, F15H18_28  go_component mitochondrial inner membrane|GO:0005743||IEA  go_process protein transport|GO:0015031||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744||ISS  go_process protein transport|GO:0015031||ISS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein  note mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein; FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: mitochondrial inner membrane, mitochondrial inner membrane presequence translocase complex; CONTAINS InterPro DOMAIN/s: Mitochondrial import inner membrane translocase, subunit Tim17/22 (InterPro:IPR003397); BEST Arabidopsis thaliana protein match is: MEE67 (maternal effect embryo arrest 67); P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter (TAIR:AT3G10110.1); Has 498 Blast hits to 498 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 228; Fungi - 159; Plants - 79; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT1G18320.1p  transcript_id AT1G18320.1  protein_id AT1G18320.1p  transcript_id AT1G18320.1  
At1g18330	chr1:006307629	0.0	C/6307629-6307640,6307383-6307487,6307180-6307291,6307028-6307089,6306196-6306945	AT1G18330.1  CDS  gene_syn EARLY-PHYTOCHROME-RESPONSIVE1, EPR1, F15H18.16, F15H18_16  gene EPR1  function EARLY-PHYTOCHROME-RESPONSIVE1  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product EPR1 (EARLY-PHYTOCHROME-RESPONSIVE1); DNA binding / transcription factor  note EARLY-PHYTOCHROME-RESPONSIVE1 (EPR1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to cadmium ion, response to ethylene stimulus, response to salt stress, regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT3G10113.1); Has 879 Blast hits to 868 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 84; Fungi - 22; Plants - 675; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT1G18330.1p  transcript_id AT1G18330.1  protein_id AT1G18330.1p  transcript_id AT1G18330.1  
At1g18330	chr1:006307629	0.0	C/6307629-6307718,6307383-6307487,6307180-6307291,6307028-6307089,6306196-6306945	AT1G18330.2  CDS  gene_syn EARLY-PHYTOCHROME-RESPONSIVE1, EPR1, F15H18.16, F15H18_16  gene EPR1  function EARLY-PHYTOCHROME-RESPONSIVE1  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product EPR1 (EARLY-PHYTOCHROME-RESPONSIVE1); DNA binding / transcription factor  note EARLY-PHYTOCHROME-RESPONSIVE1 (EPR1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to cadmium ion, response to ethylene stimulus, response to salt stress, regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT3G10113.1); Has 876 Blast hits to 865 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 84; Fungi - 17; Plants - 677; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT1G18330.2p  transcript_id AT1G18330.2  protein_id AT1G18330.2p  transcript_id AT1G18330.2  
At1g18335	chr1:006311222	0.0	C/6311222-6311326,6311022-6311124,6310563-6310642,6310154-6310462,6309961-6310037,6309736-6309778,6309588-6309653,6309428-6309454	AT1G18335.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product GCN5-related N-acetyltransferase (GNAT) family protein  note GCN5-related N-acetyltransferase (GNAT) family protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 224 Blast hits to 221 proteins in 108 species: Archae - 2; Bacteria - 8; Metazoa - 97; Fungi - 51; Plants - 25; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT1G18335.1p  transcript_id AT1G18335.1  protein_id AT1G18335.1p  transcript_id AT1G18335.1  
At1g18340	chr1:006313704	0.0	C/6313704-6313734,6313492-6313580,6313128-6313410,6312812-6312858,6312581-6312618,6312449-6312494,6312296-6312349,6312143-6312211,6311959-6312035,6311779-6311874,6311612-6311687	AT1G18340.1  CDS  gene_syn F15H18.15, F15H18_15  go_component core TFIIH complex|GO:0000439||IEA  go_process DNA repair|GO:0006281||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function general RNA polymerase II transcription factor activity|GO:0016251||IEA  product basal transcription factor complex subunit-related  note basal transcription factor complex subunit-related; FUNCTIONS IN: general RNA polymerase II transcription factor activity; INVOLVED IN: DNA repair, regulation of transcription, DNA-dependent; LOCATED IN: core TFIIH complex; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor Tfb4 (InterPro:IPR004600); Has 258 Blast hits to 253 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 95; Plants - 19; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT1G18340.1p  transcript_id AT1G18340.1  protein_id AT1G18340.1p  transcript_id AT1G18340.1  
At1g18350	chr1:006315686	0.0	W/6315686-6316609	AT1G18350.1  CDS  gene_syn ATMKK7, BUD1, BUSHY AND DWARF 1, F15H18.14, F15H18_14, MAP KINASE KINASE7, MKK7  gene ATMKK7  function MAP kinase kinase7. Member of plant mitogen-activated protein kinase kinase group D. Negative regulator of polar auxin transport. Overexpression leads to activation of basal and systemic acquired resistance.  go_process defense response to oomycetes|GO:0002229|17908155|IMP  go_process systemic acquired resistance, salicylic acid mediated signaling pathway|GO:0009862|17908155|IMP  go_process auxin polar transport|GO:0009926|16377756|IMP  go_process defense response to bacterium|GO:0042742|17908155|IMP  go_function MAP kinase kinase activity|GO:0004708|11875555|TAS  go_function kinase activity|GO:0016301|16377756|IDA  go_function kinase activity|GO:0016301||ISS  product ATMKK7; MAP kinase kinase/ kinase  note ATMKK7; FUNCTIONS IN: MAP kinase kinase activity, kinase activity; INVOLVED IN: defense response to oomycetes, defense response to bacterium, auxin polar transport, systemic acquired resistance, salicylic acid mediated signaling pathway; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: MKK9 (MAP KINASE KINASE 9); MAP kinase kinase/ kinase/ protein kinase activator (TAIR:AT1G73500.1); Has 93181 Blast hits to 92156 proteins in 3410 species: Archae - 67; Bacteria - 8268; Metazoa - 40819; Fungi - 8088; Plants - 18227; Viruses - 442; Other Eukaryotes - 17270 (source: NCBI BLink).  protein_id AT1G18350.1p  transcript_id AT1G18350.1  protein_id AT1G18350.1p  transcript_id AT1G18350.1  
At1g18360	chr1:006318816	0.0	C/6318816-6319204,6318158-6318196,6318004-6318074,6317839-6317903,6317654-6317743,6317487-6317579,6316996-6317397	AT1G18360.1  CDS  gene_syn F15H18.13, F15H18_13  go_component chloroplast|GO:0009507||IEA  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT1G73480.1); Has 3797 Blast hits to 3785 proteins in 942 species: Archae - 19; Bacteria - 2420; Metazoa - 132; Fungi - 101; Plants - 246; Viruses - 60; Other Eukaryotes - 819 (source: NCBI BLink).  protein_id AT1G18360.1p  transcript_id AT1G18360.1  protein_id AT1G18360.1p  transcript_id AT1G18360.1  
At1g18370	chr1:006323580	0.0	C/6323580-6323820,6323406-6323495,6323226-6323326,6323019-6323135,6322833-6322914,6322672-6322739,6322527-6322586,6322302-6322426,6322005-6322203,6321802-6321912,6321615-6321716,6320551-6321522,6320144-6320472,6319732-6320059	AT1G18370.1  CDS  gene_syn F15H18.12, F15H18_12, HIK, HINKEL  gene HIK  function Mutant has cytokinesis defects; seedling lethal  go_component microtubule associated complex|GO:0005875||IEA  go_component chloroplast|GO:0009507||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function microtubule motor activity|GO:0003777||ISS  product HIK (HINKEL); ATP binding / microtubule motor  note HINKEL (HIK); FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: response to cyclopentenone; LOCATED IN: microtubule associated complex, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: TES (TETRASPORE); microtubule motor (TAIR:AT3G43210.1); Has 10770 Blast hits to 9838 proteins in 382 species: Archae - 14; Bacteria - 234; Metazoa - 5577; Fungi - 1089; Plants - 962; Viruses - 5; Other Eukaryotes - 2889 (source: NCBI BLink).  protein_id AT1G18370.1p  transcript_id AT1G18370.1  protein_id AT1G18370.1p  transcript_id AT1G18370.1  
At1g18390	chr1:006325876	0.0	W/6325876-6326623,6328429-6328473,6328682-6329319,6329420-6329935	AT1G18390.1  CDS  gene_syn F15H18.25, F15H18_25  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase family protein (TAIR:AT1G66880.1); Has 91764 Blast hits to 90515 proteins in 3355 species: Archae - 55; Bacteria - 7990; Metazoa - 40303; Fungi - 7395; Plants - 19637; Viruses - 531; Other Eukaryotes - 15853 (source: NCBI BLink).  protein_id AT1G18390.1p  transcript_id AT1G18390.1  protein_id AT1G18390.1p  transcript_id AT1G18390.1  
At1g18382	chr1:006326366	0.0	C/6326366-6326699	AT1G18382.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G18380  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G18382.1  
At1g18390	chr1:006327463	0.0	W/6327463-6328219,6328429-6328463,6328663-6329319,6329420-6329935	AT1G18390.2  CDS  gene_syn F15H18.25, F15H18_25  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase family protein (TAIR:AT1G66880.1).  protein_id AT1G18390.2p  transcript_id AT1G18390.2  protein_id AT1G18390.2p  transcript_id AT1G18390.2  
At1g18400	chr1:006331464	0.0	W/6331464-6331820,6331924-6332049,6332151-6332216,6332647-6332715,6333000-6333077,6333490-6333576	AT1G18400.1  CDS  gene_syn BEE1, BR Enhanced Expression 1, F15H18.11, F15H18_11  gene BEE1  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product BEE1 (BR Enhanced Expression 1); transcription factor  note BR Enhanced Expression 1 (BEE1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BEE3 (BR ENHANCED EXPRESSION 3); DNA binding / transcription factor (TAIR:AT1G73830.1); Has 1122 Blast hits to 1122 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 19; Plants - 1095; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G18400.1p  transcript_id AT1G18400.1  protein_id AT1G18400.1p  transcript_id AT1G18400.1  
At1g18410	chr1:006342101	0.0	C/6342101-6342460,6341665-6341730,6341540-6341600,6341106-6341228,6340895-6341022,6340669-6340752,6340463-6340540,6340297-6340389,6339369-6340088,6339207-6339292,6339012-6339103,6338752-6338931,6338525-6338631,6338281-6338440,6337964-6338123,6337589-6337842,6337344-6337507,6336927-6337237,6336717-6336835,6336528-6336604	AT1G18410.1  CDS  gene_syn F15H18.10, F15H18_10  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product kinesin motor protein-related  note kinesin motor protein-related; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex; EXPRESSED IN: male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATP binding / microtubule motor (TAIR:AT1G73860.1); Has 90134 Blast hits to 48498 proteins in 1716 species: Archae - 814; Bacteria - 8456; Metazoa - 46693; Fungi - 6978; Plants - 3706; Viruses - 341; Other Eukaryotes - 23146 (source: NCBI BLink).  protein_id AT1G18410.1p  transcript_id AT1G18410.1  protein_id AT1G18410.1p  transcript_id AT1G18410.1  
At1g18415	chr1:006343096	0.0	C/6343096-6345662	AT1G18415.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G18420  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G18415.1  
At1g18420	chr1:006343330	0.0	W/6343330-6343511,6343666-6343895,6343983-6344120,6344215-6344484,6344576-6344715,6344817-6344963,6345051-6345689	AT1G18420.1  CDS  gene_syn F15H18.9, F15H18_9  product unknown protein  note CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0005 (InterPro:IPR006214); BEST Arabidopsis thaliana protein match is: AtALMT9 (aluminum-activated malate transporter 9); anion channel (TAIR:AT3G18440.1); Has 336 Blast hits to 334 proteins in 83 species: Archae - 0; Bacteria - 112; Metazoa - 1; Fungi - 9; Plants - 203; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G18420.1p  transcript_id AT1G18420.1  protein_id AT1G18420.1p  transcript_id AT1G18420.1  
At1g18430	chr1:006345764	0.0	W/6345764-6345835	AT1G18430.1  tRNA  gene_syn 51768.TRNA-ASP-1  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asp (anticodon: GTC)  transcript_id AT1G18430.1  
At1g18440	chr1:006345994	0.0	W/6345994-6346332,6346403-6346487,6346709-6346776,6346890-6346940,6347026-6347099,6347279-6347337,6347421-6347497,6347573-6347686	AT1G18440.1  CDS  gene_syn F15H18.24, F15H18_24  go_component chloroplast|GO:0009507|18431481|IDA  go_process translation|GO:0006412||IEA  go_function aminoacyl-tRNA hydrolase activity|GO:0004045||IEA  go_process translation|GO:0006412||ISS  go_function aminoacyl-tRNA hydrolase activity|GO:0004045||ISS  product peptidyl-tRNA hydrolase family protein  note peptidyl-tRNA hydrolase family protein; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, conserved site (InterPro:IPR018171), Peptidyl-tRNA hydrolase (InterPro:IPR001328); BEST Arabidopsis thaliana protein match is: peptidyl-tRNA hydrolase family protein (TAIR:AT5G16140.2); Has 5517 Blast hits to 5515 proteins in 1423 species: Archae - 0; Bacteria - 2880; Metazoa - 37; Fungi - 63; Plants - 75; Viruses - 0; Other Eukaryotes - 2462 (source: NCBI BLink).  protein_id AT1G18440.1p  transcript_id AT1G18440.1  protein_id AT1G18440.1p  transcript_id AT1G18440.1  
At1g18450	chr1:006348199	0.0	W/6348199-6348211,6348301-6348392,6348508-6348672,6348750-6348823,6348899-6348979,6349070-6349130,6349268-6349317,6349460-6349514,6349720-6349797,6349875-6349928,6350003-6350056,6350126-6350186,6350342-6350393,6350742-6350808,6350934-6350996,6351081-6351143,6351240-6351302,6351398-6351462,6351551-6351619,6351721-6351766	AT1G18450.1  CDS  gene_syn ACTIN-RELATED PROTEIN 4, ARP4, ATARP4, F15H18.8, F15H18_8  gene ATARP4  function Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP family of genes. Component of chromatin remodeling complexes, involved in chromatin-mediated gene regulation. Phenotype of the arp4-1 mutant allele revealed partial sterility due to defects in anther development. Targeting the distinct, 3  UTR of AtARP4 transcripts with RNA interference caused a drastic reduction in the level of AtARP4 protein expression, and resulted in strong pleiotropic phenotypes such as altered organization of plant organs, early flowering, delayed flower senescence and high levels of sterility. Western blot analysis and immunolabelling demonstrated a clear correlation between reductions in the level of AtARP4 expression and severity of the phenotypes.  go_component nucleolus|GO:0005730|15496452|IDA  go_component nucleus|GO:0005634|12609034|IDA  go_process establishment or maintenance of chromatin architecture|GO:0006325|12609034|TAS  go_process pollen sperm cell differentiation|GO:0048235|15743449|IMP  go_process long-day photoperiodism, flowering|GO:0048574|15743449|IMP  go_function structural constituent of cytoskeleton|GO:0005200|11891255|ISS  go_function structural constituent of cytoskeleton|GO:0005200||ISS  product ATARP4; structural constituent of cytoskeleton  note ATARP4; FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: establishment or maintenance of chromatin architecture, long-day photoperiodism, flowering, pollen sperm cell differentiation; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: ACT7 (ACTIN 7); structural constituent of cytoskeleton (TAIR:AT5G09810.1); Has 10303 Blast hits to 10073 proteins in 2218 species: Archae - 2; Bacteria - 253; Metazoa - 4846; Fungi - 2024; Plants - 970; Viruses - 2; Other Eukaryotes - 2206 (source: NCBI BLink).  protein_id AT1G18450.1p  transcript_id AT1G18450.1  protein_id AT1G18450.1p  transcript_id AT1G18450.1  
At1g18460	chr1:006352682	0.0	W/6352682-6352722,6353292-6353465,6353554-6353959,6354039-6354322,6354429-6354497,6354588-6354644,6354725-6354777,6354870-6354945,6355026-6355971	AT1G18460.1  CDS  gene_syn F15H18.6, F15H18_6  go_process glycerol biosynthetic process|GO:0006114||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function lipase activity|GO:0016298||ISS  product lipase family protein  note lipase family protein; FUNCTIONS IN: lipase activity; INVOLVED IN: glycerol biosynthetic process, lipid metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AB-hydrolase associated lipase region (InterPro:IPR006693); BEST Arabidopsis thaliana protein match is: lipase family protein (TAIR:AT1G73920.1); Has 1378 Blast hits to 1358 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 1048; Fungi - 175; Plants - 88; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT1G18460.1p  transcript_id AT1G18460.1  protein_id AT1G18460.1p  transcript_id AT1G18460.1  
At1g18470	chr1:006359942	0.0	C/6359942-6360057,6359344-6359434,6359159-6359243,6358782-6358866,6358626-6358695,6358232-6358301,6358046-6358091,6357685-6357934,6357402-6357607,6357237-6357311,6356972-6357149	AT1G18470.2  CDS  gene_syn F15H18.5, F15H18_5  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G73950.1); Has 150 Blast hits to 149 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 60; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G18470.2p  transcript_id AT1G18470.2  protein_id AT1G18470.2p  transcript_id AT1G18470.2  
At1g18470	chr1:006359942	0.0	C/6359942-6360057,6359344-6359434,6359159-6359243,6358782-6358866,6358626-6358695,6358232-6358301,6358046-6358091,6357685-6357934,6357402-6357607,6357237-6357311,6357080-6357149,6356855-6356935,6356676-6356755,6356407-6356485	AT1G18470.1  CDS  gene_syn F15H18.5, F15H18_5  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G73950.1); Has 2136 Blast hits to 2130 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 1341; Fungi - 16; Plants - 291; Viruses - 220; Other Eukaryotes - 268 (source: NCBI BLink).  protein_id AT1G18470.1p  transcript_id AT1G18470.1  protein_id AT1G18470.1p  transcript_id AT1G18470.1  
At1g18480	chr1:006361639	0.0	W/6361639-6362814	AT1G18480.1  CDS  gene_syn F15H18.29  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product calcineurin-like phosphoesterase family protein  note calcineurin-like phosphoesterase family protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: calcineurin-like phosphoesterase family protein (TAIR:AT1G07010.1); Has 433 Blast hits to 431 proteins in 108 species: Archae - 12; Bacteria - 139; Metazoa - 0; Fungi - 17; Plants - 53; Viruses - 3; Other Eukaryotes - 209 (source: NCBI BLink).  protein_id AT1G18480.1p  transcript_id AT1G18480.1  protein_id AT1G18480.1p  transcript_id AT1G18480.1  
At1g18485	chr1:006363172	0.0	W/6363172-6366084	AT1G18485.1  CDS  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G57430.1); Has 16634 Blast hits to 4852 proteins in 154 species: Archae - 0; Bacteria - 2; Metazoa - 40; Fungi - 40; Plants - 16325; Viruses - 0; Other Eukaryotes - 227 (source: NCBI BLink).  protein_id AT1G18485.1p  transcript_id AT1G18485.1  protein_id AT1G18485.1p  transcript_id AT1G18485.1  
At1g18486	chr1:006366397	0.0	W/6366397-6366753	AT1G18486.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02655.1); Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G18486.1p  transcript_id AT1G18486.1  protein_id AT1G18486.1p  transcript_id AT1G18486.1  
At1g18490	chr1:006367116	0.0	W/6367116-6367311,6367735-6367886,6367971-6368139,6368218-6368418,6368510-6368640	AT1G18490.1  CDS  gene_syn F15H18.26, F15H18_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1637 (InterPro:IPR012864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39890.1); Has 239 Blast hits to 239 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 84; Fungi - 0; Plants - 130; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT1G18490.1p  transcript_id AT1G18490.1  protein_id AT1G18490.1p  transcript_id AT1G18490.1  
At1g18500	chr1:006369347	0.0	W/6369347-6370059,6370150-6370363,6370463-6370543,6370888-6370980,6371099-6371185,6371289-6371389,6371612-6371645,6371733-6371807,6372069-6372152,6372243-6372377,6372462-6372607,6372729-6372861	AT1G18500.1  CDS  gene_syn F15H18.3, F15H18_3, IPMS1, ISOPROPYLMALATE SYNTHASE 1, MAML-4, METHYLTHIOALKYLMALATE SYNTHASE-LIKE 4  gene MAML-4  function Encodes an active Arabidopsis isopropylmalate synthase IPMS1. Involved in leucine biosynthesis. Do not participate in the chain elongation of glucosinolates. Expressed constitutively throughout the plant. Loss of IPMS1 can be compensated by a second isopropylmalate synthase gene IPMS2 (At1g74040).  go_component chloroplast|GO:0009507|18431481|IDA  go_process leucine biosynthetic process|GO:0009098|17189332|IDA  go_function 2-isopropylmalate synthase activity|GO:0003852|17189332|IDA  product MAML-4 (METHYLTHIOALKYLMALATE SYNTHASE-LIKE 4); 2-isopropylmalate synthase  note METHYLTHIOALKYLMALATE SYNTHASE-LIKE 4 (MAML-4); FUNCTIONS IN: 2-isopropylmalate synthase activity; INVOLVED IN: leucine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Alpha-isopropylmalate/homocitrate synthase, conserved site (InterPro:IPR002034), 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain (InterPro:IPR013709), Pyruvate carboxyltransferase (InterPro:IPR000891), Bacterial 2-isopropylmalate synthase (InterPro:IPR005671); BEST Arabidopsis thaliana protein match is: IMS1 (2-ISOPROPYLMALATE SYNTHASE 1); 2-isopropylmalate synthase (TAIR:AT1G74040.1); Has 12307 Blast hits to 12303 proteins in 1392 species: Archae - 331; Bacteria - 4783; Metazoa - 186; Fungi - 300; Plants - 180; Viruses - 0; Other Eukaryotes - 6527 (source: NCBI BLink).  protein_id AT1G18500.1p  transcript_id AT1G18500.1  protein_id AT1G18500.1p  transcript_id AT1G18500.1  
At1g18510	chr1:006373295	0.0	W/6373295-6373711,6373791-6374090	AT1G18510.1  CDS  gene_syn F15H18.2, F15H18_2, TET16, TETRASPANIN 16  gene TET16  function Member of TETRASPANIN family  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product TET16 (TETRASPANIN 16)  note TETRASPANIN 16 (TET16); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: pollen tube; BEST Arabidopsis thaliana protein match is: TET17 (TETRASPANIN 17) (TAIR:AT1G74045.1); Has 78 Blast hits to 78 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G18510.1p  transcript_id AT1G18510.1  protein_id AT1G18510.1p  transcript_id AT1G18510.1  
At1g18520	chr1:006375051	0.0	W/6375051-6375557,6375870-6376178	AT1G18520.1  CDS  gene_syn F15H18.1, F15H18_1, TET11, TETRASPANIN11  gene TET11  function Member of TETRASPANIN family  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process aging|GO:0007568||ISS  go_function molecular_function|GO:0003674||ND  product TET11 (TETRASPANIN11)  note TETRASPANIN11 (TET11); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: TET12 (TETRASPANIN12) (TAIR:AT5G23030.1); Has 207 Blast hits to 207 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 205; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G18520.1p  transcript_id AT1G18520.1  protein_id AT1G18520.1p  transcript_id AT1G18520.1  
At1g18530	chr1:006376783	0.0	W/6376783-6377256	AT1G18530.1  CDS  gene_syn F25I16.13, F25I16_13  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calmodulin, putative  note calmodulin, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium ion binding (TAIR:AT3G25600.1); Has 16797 Blast hits to 11750 proteins in 1267 species: Archae - 0; Bacteria - 110; Metazoa - 6973; Fungi - 3810; Plants - 3169; Viruses - 2; Other Eukaryotes - 2733 (source: NCBI BLink).  protein_id AT1G18530.1p  transcript_id AT1G18530.1  protein_id AT1G18530.1p  transcript_id AT1G18530.1  
At1g18540	chr1:006378292	0.0	C/6378292-6378548,6377976-6378082,6377706-6377887,6377448-6377603	AT1G18540.1  CDS  gene_syn F25I16.12, F25I16_12  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component intracellular|GO:0005622||ISS  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L6 (RPL6A)  note 60S ribosomal protein L6 (RPL6A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L6, N-terminal (InterPro:IPR005568), Ribosomal protein L6E (InterPro:IPR000915); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L6 (RPL6C) (TAIR:AT1G74050.1); Has 549 Blast hits to 548 proteins in 200 species: Archae - 13; Bacteria - 0; Metazoa - 257; Fungi - 97; Plants - 77; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT1G18540.1p  transcript_id AT1G18540.1  protein_id AT1G18540.1p  transcript_id AT1G18540.1  
At1g18550	chr1:006383673	0.0	C/6383673-6384340,6383312-6383585,6383155-6383205,6382970-6383062,6381804-6382862,6381656-6381688	AT1G18550.1  CDS  gene_syn F25I16.11, F25I16_11  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product ATP binding / microtubule motor  note ATP binding / microtubule motor; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin motor protein-related (TAIR:AT3G49650.1); Has 8041 Blast hits to 7627 proteins in 242 species: Archae - 0; Bacteria - 13; Metazoa - 4052; Fungi - 966; Plants - 885; Viruses - 0; Other Eukaryotes - 2125 (source: NCBI BLink).  protein_id AT1G18550.1p  transcript_id AT1G18550.1  protein_id AT1G18550.1p  transcript_id AT1G18550.1  
At1g18560	chr1:006385614	0.0	W/6385614-6385653,6385803-6386018,6386113-6386993,6387070-6388005	AT1G18560.1  CDS  gene_syn F25I16.10, F25I16_10  go_function DNA binding|GO:0003677||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product DNA binding / protein dimerization  note DNA binding / protein dimerization; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT3G42170.1); Has 714 Blast hits to 642 proteins in 72 species: Archae - 0; Bacteria - 2; Metazoa - 122; Fungi - 135; Plants - 440; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G18560.1p  transcript_id AT1G18560.1  protein_id AT1G18560.1p  transcript_id AT1G18560.1  
At1g18570	chr1:006389765	0.0	W/6389765-6389900,6390015-6390144,6390234-6391026	AT1G18570.1  CDS  gene_syn AtMYB51, BW51A, BW51B, F25I16.9, F25I16_9, HIG1, HIGH INDOLIC GLUCOSINOLATE 1, MYB DOMAIN PROTEIN 51, MYB51, myb domain protein 51  gene MYB51  function Encodes a member of the R2R3-MYB transcription family. Involved in indole glucosinolate biosynthesis.  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process indole glucosinolate biosynthetic process|GO:0009759|17461791|IMP  go_process defense response to bacterium|GO:0042742|19095898|IMP  go_process callose deposition in cell wall during defense response|GO:0052544|19095898|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB51 (MYB DOMAIN PROTEIN 51); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 51 (MYB51); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 11 processes; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB122 (MYB DOMAIN PROTEIN 122); DNA binding / transcription factor (TAIR:AT1G74080.1); Has 6469 Blast hits to 6009 proteins in 354 species: Archae - 0; Bacteria - 2; Metazoa - 625; Fungi - 319; Plants - 3868; Viruses - 4; Other Eukaryotes - 1651 (source: NCBI BLink).  protein_id AT1G18570.1p  transcript_id AT1G18570.1  protein_id AT1G18570.1p  transcript_id AT1G18570.1  
At1g18580	chr1:006396144	0.0	W/6396144-6396296,6396545-6398005	AT1G18580.1  CDS  gene_syn F25I16.8, F25I16_8, GAUT11, Galacturonosyltransferase 11  gene GAUT11  function Encodes a protein with putative galacturonosyltransferase activity.  go_component mitochondrion|GO:0005739||IEA  go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS  product GAUT11 (Galacturonosyltransferase 11); polygalacturonate 4-alpha-galacturonosyltransferase  note Galacturonosyltransferase 11 (GAUT11); FUNCTIONS IN: polygalacturonate 4-alpha-galacturonosyltransferase activity; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: GAUT10 (GALACTURONOSYLTRANSFERASE 10); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT2G20810.1); Has 233 Blast hits to 233 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 233; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G18580.1p  transcript_id AT1G18580.1  protein_id AT1G18580.1p  transcript_id AT1G18580.1  
At1g18590	chr1:006398634	0.0	W/6398634-6399674	AT1G18590.1  CDS  gene_syn ARABIDOPSIS SULFOTRANSFERASE 5C, ATSOT17, ATST5C, F25I16.7, F25I16_7, SOT17, SULFOTRANSFERASE 17  gene SOT17  function encodes a desulfoglucosinolate sulfotransferase, involved in the final step of glucosinolate core structure biosynthesis. Has a broad-substrate specificity with preference with methionine-derived desulfoglucosinolates.  go_component cellular_component|GO:0005575||ND  go_process glucosinolate biosynthetic process|GO:0019761|15358770|IDA  go_function sulfotransferase activity|GO:0008146||ISS  go_function desulfoglucosinolate sulfotransferase activity|GO:0047364|15358770|IDA  product SOT17 (SULFOTRANSFERASE 17); desulfoglucosinolate sulfotransferase/ sulfotransferase  note SULFOTRANSFERASE 17 (SOT17); FUNCTIONS IN: sulfotransferase activity, desulfoglucosinolate sulfotransferase activity; INVOLVED IN: glucosinolate biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sulfotransferase (InterPro:IPR000863); BEST Arabidopsis thaliana protein match is: SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18); 3-methylthiopropyl-desulfoglucosinolate sulfotransferase/ 4-methylthiobutyl-desulfoglucosinolate sulfotransferase/ 5-methylthiopentyl-desulfoglucosinolate sulfotransferase/ 7-methylthioheptyl-desulfoglucosinolate sulfotransferase/ 8-methylthiooctyl-desulfoglucosinolate sulfotransferase/ desulfoglucosinolate sulfotransferase/ indol-3-yl-methyl-desulfoglucosinolate sulfotransferase/ sulfotransferase (TAIR:AT1G74090.1); Has 2384 Blast hits to 2343 proteins in 153 species: Archae - 0; Bacteria - 181; Metazoa - 1453; Fungi - 1; Plants - 305; Viruses - 0; Other Eukaryotes - 444 (source: NCBI BLink).  protein_id AT1G18590.1p  transcript_id AT1G18590.1  protein_id AT1G18590.1p  transcript_id AT1G18590.1  
At1g18600	chr1:006400647	0.0	W/6400647-6401014,6401122-6401242,6401387-6401506,6401657-6401770,6401927-6401971,6402159-6402263,6402353-6402394,6402492-6402587	AT1G18600.1  CDS  gene_syn ARABIDOPSIS RHOMBOID-LIKE PROTEIN 12, ATRBL12, F25I16.6, F25I16_6, RBL12  gene RBL12  function Mitochondrion-located rhomboid-like protein  go_component mitochondrion|GO:0005739|18543065|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product RBL12 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 12)  note ARABIDOPSIS RHOMBOID-LIKE PROTEIN 12 (RBL12); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: rhomboid family protein (TAIR:AT1G74130.1); Has 2292 Blast hits to 2292 proteins in 585 species: Archae - 68; Bacteria - 1162; Metazoa - 97; Fungi - 89; Plants - 39; Viruses - 0; Other Eukaryotes - 837 (source: NCBI BLink).  protein_id AT1G18600.1p  transcript_id AT1G18600.1  protein_id AT1G18600.1p  transcript_id AT1G18600.1  
At1g18610	chr1:006405779	0.0	W/6405779-6405959,6406282-6406431,6406525-6406692,6406907-6407059,6407155-6407307,6407562-6407726,6407829-6407969,6408080-6408266,6408355-6408595,6408706-6408831	AT1G18610.1  CDS  gene_syn F25I16.5, F25I16_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74150.1); Has 8761 Blast hits to 4412 proteins in 271 species: Archae - 12; Bacteria - 304; Metazoa - 4209; Fungi - 851; Plants - 1246; Viruses - 11; Other Eukaryotes - 2128 (source: NCBI BLink).  protein_id AT1G18610.1p  transcript_id AT1G18610.1  protein_id AT1G18610.1p  transcript_id AT1G18610.1  
At1g18620	chr1:006410191	0.0	W/6410191-6410216,6410558-6410690,6410770-6410854,6411260-6413109,6413237-6413360,6413443-6414269	AT1G18620.2  CDS  gene_syn F25I16.3, F25I16_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74160.1); Has 1732 Blast hits to 1092 proteins in 160 species: Archae - 0; Bacteria - 94; Metazoa - 677; Fungi - 130; Plants - 158; Viruses - 11; Other Eukaryotes - 662 (source: NCBI BLink).  protein_id AT1G18620.2p  transcript_id AT1G18620.2  protein_id AT1G18620.2p  transcript_id AT1G18620.2  
At1g18620	chr1:006410719	0.0	W/6410719-6410854,6411260-6413109,6413237-6413360,6413443-6414269	AT1G18620.1  CDS  gene_syn F25I16.3, F25I16_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74160.1); Has 1778 Blast hits to 1081 proteins in 158 species: Archae - 0; Bacteria - 111; Metazoa - 676; Fungi - 128; Plants - 160; Viruses - 6; Other Eukaryotes - 697 (source: NCBI BLink).  protein_id AT1G18620.1p  transcript_id AT1G18620.1  protein_id AT1G18620.1p  transcript_id AT1G18620.1  
At1g18630	chr1:006415226	0.0	W/6415226-6415349,6415473-6415541,6415625-6415731,6416116-6416283	AT1G18630.1  CDS  gene_syn F25I16.4, F25I16_4, GR-RBP6, glycine-rich RNA-binding protein 6  gene GR-RBP6  function encodes a glycine-rich RNA binding protein.  go_component mitochondrion|GO:0005739||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product GR-RBP6 (glycine-rich RNA-binding protein 6); RNA binding / nucleic acid binding / nucleotide binding  note glycine-rich RNA-binding protein 6 (GR-RBP6); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: GR-RBP5 (glycine-rich RNA-binding protein 5); ATP binding / RNA binding (TAIR:AT1G74230.1); Has 28425 Blast hits to 16840 proteins in 834 species: Archae - 18; Bacteria - 2282; Metazoa - 15076; Fungi - 2461; Plants - 5898; Viruses - 94; Other Eukaryotes - 2596 (source: NCBI BLink).  protein_id AT1G18630.1p  transcript_id AT1G18630.1  protein_id AT1G18630.1p  transcript_id AT1G18630.1  
At1g18640	chr1:006418023	0.0	C/6418023-6418245,6417702-6417834,6417502-6417609,6417141-6417234,6416872-6417021,6416733-6416786,6416524-6416649	AT1G18640.2  CDS  gene_syn 3-PHOSPHOSERINE PHOSPHATASE, PSP  gene PSP  function 3-phosphoserine phosphatase acting in the last step of serine biosynthesis within the chloroplast  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|10196182|IDA  go_process L-serine biosynthetic process|GO:0006564|10196182|TAS  go_function phosphoserine phosphatase activity|GO:0004647|10196182|IDA  product PSP (3-PHOSPHOSERINE PHOSPHATASE); phosphoserine phosphatase  note 3-PHOSPHOSERINE PHOSPHATASE (PSP); FUNCTIONS IN: phosphoserine phosphatase activity; INVOLVED IN: L-serine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Phosphoserine phosphatase SerB (InterPro:IPR004469), HAD-superfamily hydrolase, subfamily IB, PSPase-like (InterPro:IPR006383); Has 2293 Blast hits to 2293 proteins in 898 species: Archae - 74; Bacteria - 1554; Metazoa - 158; Fungi - 96; Plants - 36; Viruses - 0; Other Eukaryotes - 375 (source: NCBI BLink).  protein_id AT1G18640.2p  transcript_id AT1G18640.2  protein_id AT1G18640.2p  transcript_id AT1G18640.2  
At1g18650	chr1:006420362	0.0	C/6420362-6420413,6419779-6420018,6419426-6419459,6419036-6419264	AT1G18650.1  CDS  gene_syn F25I16.1, F25I16_1, PDCB3, PLASMODESMATA CALLOSE-BINDING PROTEIN 3  gene PDCB3  function Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and is predicted to bind callose.  go_component plasmodesma|GO:0009506|19223515|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function polysaccharide binding|GO:0030247|19223515|ISS  go_function callose binding|GO:0080087|19223515|ISS  product PDCB3 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3); callose binding / polysaccharide binding  note PLASMODESMATA CALLOSE-BINDING PROTEIN 3 (PDCB3); FUNCTIONS IN: callose binding, polysaccharide binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasmodesma, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: E13L3 (GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 3); callose binding / polysaccharide binding (TAIR:AT5G08000.1); Has 831 Blast hits to 795 proteins in 57 species: Archae - 4; Bacteria - 4; Metazoa - 6; Fungi - 34; Plants - 768; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G18650.1p  transcript_id AT1G18650.1  protein_id AT1G18650.1p  transcript_id AT1G18650.1  
At1g18660	chr1:006421433	0.0	W/6421433-6421501,6421644-6421745,6422098-6422180,6422359-6422443,6422528-6422614,6422729-6422790,6422883-6423073,6423160-6423220,6423329-6423506,6423839-6423877,6423971-6424032,6424136-6424172,6424333-6424382,6424645-6424711,6424793-6424871,6425193-6425272,6425346-6425414,6425506-6425565	AT1G18660.1  CDS  gene_syn F6A14.25, F6A14_25  go_process ATP-dependent proteolysis|GO:0006510||IEA  go_function ATP-dependent peptidase activity|GO:0004176||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, ATP-dependent peptidase activity, binding, zinc ion binding; INVOLVED IN: ATP-dependent proteolysis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, lon N-terminal (InterPro:IPR003111), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Tetratricopeptide-like helical (InterPro:IPR011990), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: ATP-dependent protease La (LON) domain-containing protein (TAIR:AT1G75460.1); Has 9677 Blast hits to 9340 proteins in 1266 species: Archae - 10; Bacteria - 517; Metazoa - 6039; Fungi - 629; Plants - 853; Viruses - 70; Other Eukaryotes - 1559 (source: NCBI BLink).  protein_id AT1G18660.1p  transcript_id AT1G18660.1  protein_id AT1G18660.1p  transcript_id AT1G18660.1  
At1g18660	chr1:006421433	0.0	W/6421433-6421501,6421644-6421745,6422098-6422180,6422359-6422443,6422528-6422614,6422729-6422790,6422883-6423073,6423160-6423220,6423329-6423506,6423839-6423877,6423971-6424032,6424136-6424172,6424333-6424382,6424645-6424711,6424793-6424871,6425193-6425272,6425346-6425414,6425506-6425565	AT1G18660.2  CDS  gene_syn F6A14.25, F6A14_25  go_process ATP-dependent proteolysis|GO:0006510||IEA  go_function ATP-dependent peptidase activity|GO:0004176||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, ATP-dependent peptidase activity, binding, zinc ion binding; INVOLVED IN: ATP-dependent proteolysis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, lon N-terminal (InterPro:IPR003111), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Tetratricopeptide-like helical (InterPro:IPR011990), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: ATP-dependent protease La (LON) domain-containing protein (TAIR:AT1G75460.1); Has 9677 Blast hits to 9340 proteins in 1266 species: Archae - 10; Bacteria - 517; Metazoa - 6039; Fungi - 629; Plants - 853; Viruses - 70; Other Eukaryotes - 1559 (source: NCBI BLink).  protein_id AT1G18660.2p  transcript_id AT1G18660.2  protein_id AT1G18660.2p  transcript_id AT1G18660.2  
At1g18660	chr1:006421433	0.0	W/6421433-6421501,6421644-6421745,6422098-6422180,6422359-6422443,6422528-6422614,6422729-6422790,6422883-6423073,6423160-6423220,6423329-6423506,6423839-6423877,6423971-6424032,6424136-6424172,6424333-6424382,6424645-6424711,6424793-6424871,6425193-6425272,6425346-6425414,6425506-6425565	AT1G18660.3  CDS  gene_syn F6A14.25, F6A14_25  go_process ATP-dependent proteolysis|GO:0006510||IEA  go_function ATP-dependent peptidase activity|GO:0004176||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, ATP-dependent peptidase activity, binding, zinc ion binding; INVOLVED IN: ATP-dependent proteolysis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, lon N-terminal (InterPro:IPR003111), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Tetratricopeptide-like helical (InterPro:IPR011990), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: ATP-dependent protease La (LON) domain-containing protein (TAIR:AT1G75460.1); Has 9677 Blast hits to 9340 proteins in 1266 species: Archae - 10; Bacteria - 517; Metazoa - 6039; Fungi - 629; Plants - 853; Viruses - 70; Other Eukaryotes - 1559 (source: NCBI BLink).  protein_id AT1G18660.3p  transcript_id AT1G18660.3  protein_id AT1G18660.3p  transcript_id AT1G18660.3  
At1g18660	chr1:006421433	0.0	W/6421433-6421501,6421644-6421745,6422098-6422180,6422359-6422443,6422528-6422614,6422729-6422790,6422883-6423073,6423160-6423220,6423329-6423506,6423839-6423877,6423971-6424032,6424136-6424172,6424333-6424382,6424645-6424711,6424793-6424871,6425193-6425272,6425346-6425489	AT1G18660.4  CDS  gene_syn F6A14.25, F6A14_25  go_process ATP-dependent proteolysis|GO:0006510||IEA  go_function ATP-dependent peptidase activity|GO:0004176||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, ATP-dependent peptidase activity, binding, zinc ion binding; INVOLVED IN: ATP-dependent proteolysis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, lon N-terminal (InterPro:IPR003111), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Tetratricopeptide-like helical (InterPro:IPR011990), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G27330.1); Has 9647 Blast hits to 9310 proteins in 1249 species: Archae - 10; Bacteria - 482; Metazoa - 6037; Fungi - 629; Plants - 853; Viruses - 70; Other Eukaryotes - 1566 (source: NCBI BLink).  protein_id AT1G18660.4p  transcript_id AT1G18660.4  protein_id AT1G18660.4p  transcript_id AT1G18660.4  
At1g18670	chr1:006430289	0.0	C/6430289-6430696,6429914-6430198,6429494-6429814,6429126-6429359,6428902-6428999,6428625-6428715,6427973-6428512,6427354-6427486,6427242-6427261	AT1G18670.1  CDS  gene_syn F6A14.22, F6A14_22, IBS1, IMPAIRED IN BABA-INDUCED STERILITY 1  gene IBS1  function Encodes a cyclin-dependent kinase-like protein with a ser/thr protein kinase domain and an N-terminal myristoylation sequence. Mutants in this gene are unable to express female sterility in response to beta-aminobutyric acid, as wild type plants do.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product IBS1 (IMPAIRED IN BABA-INDUCED STERILITY 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note IMPAIRED IN BABA-INDUCED STERILITY 1 (IBS1); FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT1G74330.2); Has 88728 Blast hits to 87625 proteins in 2989 species: Archae - 39; Bacteria - 7411; Metazoa - 39016; Fungi - 8293; Plants - 17045; Viruses - 404; Other Eukaryotes - 16520 (source: NCBI BLink).  protein_id AT1G18670.1p  transcript_id AT1G18670.1  protein_id AT1G18670.1p  transcript_id AT1G18670.1  
At1g18680	chr1:006433140	0.0	C/6433140-6433434,6432917-6433039,6432133-6432275	AT1G18680.1  CDS  gene_syn F6A14.21, F6A14_21  go_component chloroplast|GO:0009507||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function endonuclease activity|GO:0004519||IEA  go_function nucleic acid binding|GO:0003676||ISS  go_function endonuclease activity|GO:0004519||ISS  product HNH endonuclease domain-containing protein  note HNH endonuclease domain-containing protein; FUNCTIONS IN: endonuclease activity, nucleic acid binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: HNH nuclease (InterPro:IPR003615), HNH endonuclease (InterPro:IPR002711); BEST Arabidopsis thaliana protein match is: HNH endonuclease domain-containing protein (TAIR:AT3G47490.1); Has 51 Blast hits to 51 proteins in 15 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G18680.1p  transcript_id AT1G18680.1  protein_id AT1G18680.1p  transcript_id AT1G18680.1  
At1g18690	chr1:006435153	0.0	W/6435153-6436694	AT1G18690.1  CDS  gene_syn F6A14.20, F6A14_20  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product transferase/ transferase, transferring glycosyl groups  note transferase/ transferase, transferring glycosyl groups; FUNCTIONS IN: transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Galactosyl transferase (InterPro:IPR008630); BEST Arabidopsis thaliana protein match is: XXT5 (XYLOGLUCAN XYLOSYLTRANSFERASE 5); transferase/ transferase, transferring glycosyl groups / xyloglucan 6-xylosyltransferase (TAIR:AT1G74380.1); Has 287 Blast hits to 283 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 97; Plants - 174; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G18690.1p  transcript_id AT1G18690.1  protein_id AT1G18690.1p  transcript_id AT1G18690.1  
At1g18700	chr1:006437591	0.0	W/6437591-6437729,6437844-6437913,6438165-6438207,6438297-6438374,6438488-6438572,6438676-6438758,6439115-6439172,6439530-6439640,6439896-6439938,6440189-6440285,6440710-6440745,6440913-6441049,6441208-6441278,6441365-6441418,6441567-6441709,6441803-6441943,6442102-6442341,6442427-6442486,6442568-6442825,6442906-6443046	AT1G18700.3  CDS  gene_syn F6A14.19, F6A14_19  go_function heat shock protein binding|GO:0031072||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Thioredoxin-like fold (InterPro:IPR012336).  protein_id AT1G18700.3p  transcript_id AT1G18700.3  protein_id AT1G18700.3p  transcript_id AT1G18700.3  
At1g18700	chr1:006437591	0.0	W/6437591-6437729,6437844-6437913,6438165-6438207,6438297-6438374,6438488-6438572,6438676-6438758,6439115-6439172,6439530-6439640,6439973-6440030,6440189-6440285,6440710-6440745,6440913-6441049,6441208-6441278,6441365-6441418,6441567-6441709,6441803-6441943,6442102-6442341,6442427-6442486,6442568-6442825,6442906-6443029,6443783-6443814	AT1G18700.2  CDS  gene_syn F6A14.19, F6A14_19  go_function heat shock protein binding|GO:0031072||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Thioredoxin-like fold (InterPro:IPR012336); Has 254 Blast hits to 252 proteins in 64 species: Archae - 0; Bacteria - 8; Metazoa - 166; Fungi - 15; Plants - 28; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT1G18700.2p  transcript_id AT1G18700.2  protein_id AT1G18700.2p  transcript_id AT1G18700.2  
At1g18700	chr1:006437591	0.0	W/6437591-6437729,6437844-6437913,6438165-6438207,6438297-6438374,6438488-6438572,6438676-6438758,6439115-6439172,6439530-6439640,6439973-6440030,6440189-6440285,6440710-6440745,6440913-6441049,6441208-6441278,6441365-6441418,6441567-6441709,6441803-6441943,6442102-6442341,6442427-6442486,6442568-6442825,6442906-6443046	AT1G18700.1  CDS  gene_syn F6A14.19, F6A14_19  go_function heat shock protein binding|GO:0031072||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Thioredoxin-like fold (InterPro:IPR012336); Has 254 Blast hits to 252 proteins in 64 species: Archae - 0; Bacteria - 8; Metazoa - 166; Fungi - 15; Plants - 28; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT1G18700.1p  transcript_id AT1G18700.1  protein_id AT1G18700.1p  transcript_id AT1G18700.1  
At1g18710	chr1:006450781	0.0	W/6450781-6450913,6452076-6452205,6452446-6452986	AT1G18710.1  CDS  gene_syn AtMYB47, F6A14.18, F6A14_18, myb domain protein 47  gene AtMYB47  function Member of the R2R3 factor gene family.  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product AtMYB47 (myb domain protein 47); DNA binding / transcription factor  note myb domain protein 47 (AtMYB47); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to jasmonic acid stimulus, response to salt stress, regulation of transcription, DNA-dependent; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: leaf lamina base, stem, leaf whorl, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB95 (myb domain protein 95); DNA binding / transcription factor (TAIR:AT1G74430.1); Has 6120 Blast hits to 5627 proteins in 350 species: Archae - 0; Bacteria - 0; Metazoa - 663; Fungi - 316; Plants - 3566; Viruses - 3; Other Eukaryotes - 1572 (source: NCBI BLink).  protein_id AT1G18710.1p  transcript_id AT1G18710.1  protein_id AT1G18710.1p  transcript_id AT1G18710.1  
At1g18720	chr1:006459296	0.0	C/6459296-6459658,6458451-6458513,6458272-6458343,6458020-6458142	AT1G18720.1  CDS  gene_syn F6A14.17, F6A14_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF962 (InterPro:IPR009305); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74440.1); Has 448 Blast hits to 448 proteins in 205 species: Archae - 0; Bacteria - 250; Metazoa - 0; Fungi - 92; Plants - 47; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT1G18720.1p  transcript_id AT1G18720.1  protein_id AT1G18720.1p  transcript_id AT1G18720.1  
At1g18730	chr1:006460625	0.0	W/6460625-6460690,6460767-6460808,6460896-6461073,6461174-6461229,6461318-6461389,6461994-6462107	AT1G18730.1  CDS  gene_syn F6A14.16, F6A14_16, NDF6, NDH DEPENDENT FLOW 6  gene NDF6  function likely a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component NAD(P)H dehydrogenase complex (plastoquinone)|GO:0010598|18535009|NAS  go_process photosynthetic electron transport in photosystem I|GO:0009773|18535009|TAS  go_function molecular_function|GO:0003674||ND  product NDF6 (NDH DEPENDENT FLOW 6)  note NDH DEPENDENT FLOW 6 (NDF6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 20 Blast hits to 20 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G18730.1p  transcript_id AT1G18730.1  protein_id AT1G18730.1p  transcript_id AT1G18730.1  
At1g18730	chr1:006460625	0.0	W/6460625-6460690,6460767-6460808,6460899-6461073,6461174-6461229,6461318-6461389,6461844-6461849	AT1G18730.2  CDS  gene_syn F6A14.16, F6A14_16, NDF6, NDH DEPENDENT FLOW 6  gene NDF6  function likely a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity.  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component NAD(P)H dehydrogenase complex (plastoquinone)|GO:0010598|18535009|NAS  go_process photosynthetic electron transport in photosystem I|GO:0009773|18535009|TAS  go_function molecular_function|GO:0003674||ND  product NDF6 (NDH DEPENDENT FLOW 6)  note NDH DEPENDENT FLOW 6 (NDF6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast thylakoid membrane, NAD(P)H dehydrogenase complex (plastoquinone); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 20 Blast hits to 20 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G18730.2p  transcript_id AT1G18730.2  protein_id AT1G18730.2p  transcript_id AT1G18730.2  
At1g18730	chr1:006460625	0.0	W/6460625-6460690,6460767-6460808,6460899-6461073,6461174-6461229,6461318-6461389,6461994-6462107	AT1G18730.3  CDS  gene_syn F6A14.16, F6A14_16, NDF6, NDH DEPENDENT FLOW 6  gene NDF6  function likely a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity.  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component NAD(P)H dehydrogenase complex (plastoquinone)|GO:0010598|18535009|NAS  go_process photosynthetic electron transport in photosystem I|GO:0009773|18535009|TAS  go_function molecular_function|GO:0003674||ND  product NDF6 (NDH DEPENDENT FLOW 6)  note NDH DEPENDENT FLOW 6 (NDF6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast thylakoid membrane, NAD(P)H dehydrogenase complex (plastoquinone); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 20 Blast hits to 20 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G18730.3p  transcript_id AT1G18730.3  protein_id AT1G18730.3p  transcript_id AT1G18730.3  
At1g18730	chr1:006460625	0.0	W/6460625-6460690,6460767-6460808,6460899-6461073,6461174-6461229,6461318-6461464	AT1G18730.4  CDS  gene_syn F6A14.16, F6A14_16, NDF6, NDH DEPENDENT FLOW 6  gene NDF6  function likely a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity.  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component NAD(P)H dehydrogenase complex (plastoquinone)|GO:0010598|18535009|NAS  go_process photosynthetic electron transport in photosystem I|GO:0009773|18535009|TAS  go_function molecular_function|GO:0003674||ND  product NDF6 (NDH DEPENDENT FLOW 6)  note NDH DEPENDENT FLOW 6 (NDF6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast thylakoid membrane, NAD(P)H dehydrogenase complex (plastoquinone); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 20 Blast hits to 20 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G18730.4p  transcript_id AT1G18730.4  protein_id AT1G18730.4p  transcript_id AT1G18730.4  
At1g18735	chr1:006461232	0.0	C/6461232-6461752	AT1G18735.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G18730  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G18735.1  
At1g18740	chr1:006464125	0.0	W/6464125-6465273	AT1G18740.1  CDS  gene_syn F6A14.15, F6A14_15  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF793 (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74450.1); Has 97 Blast hits to 97 proteins in 13 species: Archae - 3; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G18740.1p  transcript_id AT1G18740.1  protein_id AT1G18740.1p  transcript_id AT1G18740.1  
At1g18750	chr1:006467266	0.0	W/6467266-6467450,6467898-6467957,6468057-6468075,6468166-6468230,6468321-6468336,6468436-6468497,6468596-6468692,6468809-6468859,6468949-6469085,6469163-6469640	AT1G18750.1  CDS  gene_syn AGAMOUS-LIKE 65, AGL65, F6A14.14, F6A14_14  gene AGL65  function Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL65 is expressed in pollen.It forms heterodimers with other MICK family members (AGL104). Involved in late stages of pollen development and pollen tube growth.  go_component nucleus|GO:0005634||IEA  go_process pollen development|GO:0009555|19211705|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL65 (AGAMOUS-LIKE 65); DNA binding / transcription factor  note AGAMOUS-LIKE 65 (AGL65); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: pollen development; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT2G03060.2); Has 4971 Blast hits to 4905 proteins in 584 species: Archae - 0; Bacteria - 0; Metazoa - 788; Fungi - 252; Plants - 3590; Viruses - 0; Other Eukaryotes - 341 (source: NCBI BLink).  protein_id AT1G18750.1p  transcript_id AT1G18750.1  protein_id AT1G18750.1p  transcript_id AT1G18750.1  
At1g18750	chr1:006467404	0.0	W/6467404-6467450,6467898-6467957,6468057-6468075,6468166-6468230,6468321-6468336,6468436-6468497,6468596-6468692,6468809-6468859,6468949-6469085,6469163-6469601,6469687-6469698	AT1G18750.2  CDS  gene_syn AGAMOUS-LIKE 65, AGL65, F6A14.14, F6A14_14  gene AGL65  function Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL65 is expressed in pollen.It forms heterodimers with other MICK family members (AGL104). Involved in late stages of pollen development and pollen tube growth.  go_process pollen development|GO:0009555|19211705|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL65 (AGAMOUS-LIKE 65); DNA binding / transcription factor  note AGAMOUS-LIKE 65 (AGL65); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: pollen development; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT2G03060.2); Has 698 Blast hits to 619 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 258; Fungi - 41; Plants - 74; Viruses - 0; Other Eukaryotes - 325 (source: NCBI BLink).  protein_id AT1G18750.2p  transcript_id AT1G18750.2  protein_id AT1G18750.2p  transcript_id AT1G18750.2  
At1g18760	chr1:006471150	0.0	C/6471150-6471824	AT1G18760.1  CDS  gene_syn F6A14.13, F6A14_13  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Ubiquitin interacting motif (InterPro:IPR003903); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G13228.1); Has 5901 Blast hits to 5887 proteins in 215 species: Archae - 0; Bacteria - 0; Metazoa - 2055; Fungi - 452; Plants - 2308; Viruses - 76; Other Eukaryotes - 1010 (source: NCBI BLink).  protein_id AT1G18760.1p  transcript_id AT1G18760.1  protein_id AT1G18760.1p  transcript_id AT1G18760.1  
At1g18770	chr1:006473951	0.0	C/6473951-6474048,6473370-6473592	AT1G18770.1  CDS  gene_syn F6A14.24, F6A14_24  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G18760.1); Has 5843 Blast hits to 5827 proteins in 209 species: Archae - 0; Bacteria - 0; Metazoa - 2158; Fungi - 406; Plants - 2265; Viruses - 68; Other Eukaryotes - 946 (source: NCBI BLink).  protein_id AT1G18770.1p  transcript_id AT1G18770.1  protein_id AT1G18770.1p  transcript_id AT1G18770.1  
At1g18773	chr1:006474948	0.0	W/6474948-6475019,6475108-6475215,6475381-6475398	AT1G18773.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: SOBER1 (SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1); carboxylesterase (TAIR:AT4G22300.1); Has 30 Blast hits to 26 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G18773.1p  transcript_id AT1G18773.1  protein_id AT1G18773.1p  transcript_id AT1G18773.1  
At1g18780	chr1:006476258	0.0	C/6476258-6477235	AT1G18780.1  CDS  gene_syn F6A14.12, F6A14_12  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT2G29840.1); Has 5937 Blast hits to 5927 proteins in 204 species: Archae - 0; Bacteria - 0; Metazoa - 2268; Fungi - 426; Plants - 2218; Viruses - 19; Other Eukaryotes - 1006 (source: NCBI BLink).  protein_id AT1G18780.1p  transcript_id AT1G18780.1  protein_id AT1G18780.1p  transcript_id AT1G18780.1  
At1g18790	chr1:006479946	0.0	C/6479946-6480043,6479717-6479850,6479328-6479644,6478851-6479111	AT1G18790.1  CDS  gene_syn F6A14.11, F6A14_11  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product RWP-RK domain-containing protein  note RWP-RK domain-containing protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: RWP-RK domain-containing protein (TAIR:AT1G74480.1); Has 305 Blast hits to 303 proteins in 39 species: Archae - 0; Bacteria - 12; Metazoa - 67; Fungi - 0; Plants - 210; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G18790.1p  transcript_id AT1G18790.1  protein_id AT1G18790.1p  transcript_id AT1G18790.1  
At1g18800	chr1:006483347	0.0	C/6483347-6483463,6482920-6483042,6482774-6482824,6482614-6482685,6482377-6482490,6482223-6482284,6482037-6482100,6481891-6481950,6481747-6481794,6481466-6481525	AT1G18800.1  CDS  gene_syn F6A14.10, F6A14_10, NAP1-RELATED PROTEIN 2, NRP2  gene NRP2  function Double nrp1-1 nrp2-1 mutants show arrest of cell cycle progression at G2/M and disordered cellular organization occurred in root tips. Localize in the nucleus and can form homomeric and heteromeric protein complexes with NRP1. Bind histones Histone2A and Histone2B and associate with chromatin in vivo.  go_component nucleus|GO:0005634|15469496|IDA  go_component nucleus|GO:0005634|17122067|IDA  go_component nucleus|GO:0005634||ISS  go_component cytoplasm|GO:0005737|17122067|IDA  go_process nucleosome assembly|GO:0006334||ISS  go_process cell proliferation|GO:0008283|17122067|IGI  go_process lateral root formation|GO:0010311|17122067|IGI  go_process cell differentiation|GO:0030154|17122067|IGI  go_function DNA binding|GO:0003677||ISS  go_function chromatin binding|GO:0003682|17122067|IPI  go_function histone binding|GO:0042393|17122067|IPI  product NRP2 (NAP1-RELATED PROTEIN 2); DNA binding / chromatin binding / histone binding  note NAP1-RELATED PROTEIN 2 (NRP2); FUNCTIONS IN: chromatin binding, histone binding, DNA binding; INVOLVED IN: cell differentiation, cell proliferation, nucleosome assembly, lateral root formation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleosome assembly protein (NAP) (InterPro:IPR002164); BEST Arabidopsis thaliana protein match is: NRP1 (NAP1-RELATED PROTEIN 1); DNA binding / chromatin binding / histone binding (TAIR:AT1G74560.2); Has 4033 Blast hits to 3213 proteins in 314 species: Archae - 6; Bacteria - 136; Metazoa - 1688; Fungi - 610; Plants - 242; Viruses - 97; Other Eukaryotes - 1254 (source: NCBI BLink).  protein_id AT1G18800.1p  transcript_id AT1G18800.1  protein_id AT1G18800.1p  transcript_id AT1G18800.1  
At1g18810	chr1:006485709	0.0	C/6485709-6486872	AT1G18810.1  CDS  gene_syn F6A14.9, F6A14_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product phytochrome kinase substrate-related  note phytochrome kinase substrate-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: PKS1 (PHYTOCHROME KINASE SUBSTRATE 1); protein binding (TAIR:AT2G02950.1); Has 438 Blast hits to 361 proteins in 37 species: Archae - 0; Bacteria - 2; Metazoa - 83; Fungi - 9; Plants - 60; Viruses - 2; Other Eukaryotes - 282 (source: NCBI BLink).  protein_id AT1G18810.1p  transcript_id AT1G18810.1  protein_id AT1G18810.1p  transcript_id AT1G18810.1  
At1g18820	chr1:006488655	0.0	W/6488655-6488735	AT1G18820.1  tRNA  gene_syn 51806.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: CAG)  transcript_id AT1G18820.1  
At1g18830	chr1:006489309	0.0	W/6489309-6489604,6489693-6489747,6489833-6489949,6490031-6490127,6490224-6490260,6490357-6490456,6490542-6490599,6490678-6490775,6490883-6491002,6491237-6491260,6491347-6491487,6491574-6491701,6491797-6492196,6492287-6492379,6492486-6492671,6492760-6492973,6493067-6493128,6493208-6493342,6493430-6493640,6493773-6494017,6494126-6494218	AT1G18830.1  CDS  gene_syn F6A14.8, F6A14_8  go_component endomembrane system|GO:0012505||IEA  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein (TAIR:AT3G63460.1); Has 10194 Blast hits to 7963 proteins in 329 species: Archae - 12; Bacteria - 1217; Metazoa - 4210; Fungi - 2289; Plants - 1067; Viruses - 0; Other Eukaryotes - 1399 (source: NCBI BLink).  protein_id AT1G18830.1p  transcript_id AT1G18830.1  protein_id AT1G18830.1p  transcript_id AT1G18830.1  
At1g18835	chr1:006496106	0.0	C/6496106-6496372	AT1G18835.1  CDS  gene_syn MIF3, MINI ZINC FINGER  gene MIF3  product MIF3 (MINI ZINC FINGER)  note MINI ZINC FINGER (MIF3); CONTAINS InterPro DOMAIN/s: ZF-HD homeobox protein Cys/His-rich dimerisation region (InterPro:IPR006456); BEST Arabidopsis thaliana protein match is: MIF1 (MINI ZINC FINGER 1); DNA binding / transcription factor (TAIR:AT1G74660.1); Has 225 Blast hits to 225 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 225; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G18835.1p  transcript_id AT1G18835.1  protein_id AT1G18835.1p  transcript_id AT1G18835.1  
At1g18840	chr1:006503355	0.0	C/6503355-6503435,6502793-6503080,6502469-6502675,6502303-6502383,6501193-6502222,6501068-6501099	AT1G18840.1  CDS  gene_syn F6A14.7, F6A14_7, IQD30  gene IQD30  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product IQD30; calmodulin binding  note IQD30; FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQD31 (IQ-domain 31); calmodulin binding (TAIR:AT1G74690.1); Has 2925 Blast hits to 2231 proteins in 269 species: Archae - 4; Bacteria - 220; Metazoa - 845; Fungi - 205; Plants - 455; Viruses - 13; Other Eukaryotes - 1183 (source: NCBI BLink).  protein_id AT1G18840.1p  transcript_id AT1G18840.1  protein_id AT1G18840.1p  transcript_id AT1G18840.1  
At1g18840	chr1:006503355	0.0	C/6503355-6503435,6502793-6503080,6502469-6502675,6502303-6502383,6501193-6502222,6501068-6501099	AT1G18840.2  CDS  gene_syn F6A14.7, F6A14_7, IQD30  gene IQD30  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product IQD30; calmodulin binding  note IQD30; FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQD31 (IQ-domain 31); calmodulin binding (TAIR:AT1G74690.1); Has 2925 Blast hits to 2231 proteins in 269 species: Archae - 4; Bacteria - 220; Metazoa - 845; Fungi - 205; Plants - 455; Viruses - 13; Other Eukaryotes - 1183 (source: NCBI BLink).  protein_id AT1G18840.2p  transcript_id AT1G18840.2  protein_id AT1G18840.2p  transcript_id AT1G18840.2  
At1g18850	chr1:006504928	0.0	C/6504928-6506127	AT1G18850.1  CDS  gene_syn F6A14.6, F6A14_6  go_component nucleolus|GO:0005730|15496452|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 22 Blast hits to 22 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G18850.1p  transcript_id AT1G18850.1  protein_id AT1G18850.1p  transcript_id AT1G18850.1  
At1g18860	chr1:006509494	0.0	W/6509494-6510060,6510247-6510360,6510448-6511209	AT1G18860.1  CDS  gene_syn AtWRKY61, F6A14.5, F6A14_5, WRKY61  gene WRKY61  function member of WRKY Transcription Factor; Group II-b  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY61; transcription factor  note WRKY61; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY72; transcription factor (TAIR:AT5G15130.1); Has 3945 Blast hits to 2234 proteins in 195 species: Archae - 0; Bacteria - 24; Metazoa - 259; Fungi - 87; Plants - 1993; Viruses - 1; Other Eukaryotes - 1581 (source: NCBI BLink).  protein_id AT1G18860.1p  transcript_id AT1G18860.1  protein_id AT1G18860.1p  transcript_id AT1G18860.1  
At1g18870	chr1:006515486	0.0	W/6515486-6515611,6515722-6515910,6516504-6516739,6516833-6516950,6517030-6517146,6517226-6517372,6517450-6517524,6517625-6517693,6517790-6517908,6518004-6518061,6518228-6518338,6518542-6518626,6518761-6518858,6518941-6519033,6519129-6519176	AT1G18870.1  CDS  gene_syn F6A14.3, F6A14_3, ICS2, ISOCHORISMATE SYNTHASE 2  gene ICS2  function Encodes a protein with isochorismate synthase activity involved in phylloquinone biosynthesis. Mutant studies of this gene s function suggest that its function is redundant with that of ICS1 (AT1G7410).  go_component plastid|GO:0009536|18451262|IDA  go_process phylloquinone biosynthetic process|GO:0042372|16617180|IMP  go_process phylloquinone biosynthetic process|GO:0042372|18451262|IMP  go_function isochorismate synthase activity|GO:0008909|18451262|IMP  product ICS2 (ISOCHORISMATE SYNTHASE 2); isochorismate synthase  note ISOCHORISMATE SYNTHASE 2 (ICS2); FUNCTIONS IN: isochorismate synthase activity; INVOLVED IN: phylloquinone biosynthetic process; LOCATED IN: plastid; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Chorismate binding, C-terminal (InterPro:IPR015890), Anthranilate synthase component I and chorismate binding protein (InterPro:IPR005801), Isochorismate synthase (InterPro:IPR004561); BEST Arabidopsis thaliana protein match is: isochorismate synthase 1 (ICS1) / isochorismate mutase (TAIR:AT1G74710.1); Has 9036 Blast hits to 9034 proteins in 1331 species: Archae - 159; Bacteria - 5491; Metazoa - 4; Fungi - 167; Plants - 126; Viruses - 0; Other Eukaryotes - 3089 (source: NCBI BLink).  protein_id AT1G18870.1p  transcript_id AT1G18870.1  protein_id AT1G18870.1p  transcript_id AT1G18870.1  
At1g18870	chr1:006515746	0.0	W/6515746-6515910,6516504-6516739,6516833-6516950,6517030-6517146,6517226-6517372,6517450-6517524,6517625-6517693,6517790-6517908,6518004-6518061,6518228-6518338,6518542-6518626,6518761-6518858,6518941-6519033,6519129-6519176	AT1G18870.2  CDS  gene_syn F6A14.3, F6A14_3, ICS2, ISOCHORISMATE SYNTHASE 2  gene ICS2  function Encodes a protein with isochorismate synthase activity involved in phylloquinone biosynthesis. Mutant studies of this gene s function suggest that its function is redundant with that of ICS1 (AT1G7410).  go_component plastid|GO:0009536|18451262|IDA  go_process phylloquinone biosynthetic process|GO:0042372|16617180|IMP  go_process phylloquinone biosynthetic process|GO:0042372|18451262|IMP  go_function isochorismate synthase activity|GO:0008909|18451262|IMP  product ICS2 (ISOCHORISMATE SYNTHASE 2); isochorismate synthase  note ISOCHORISMATE SYNTHASE 2 (ICS2); FUNCTIONS IN: isochorismate synthase activity; INVOLVED IN: phylloquinone biosynthetic process; LOCATED IN: plastid; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Chorismate binding, C-terminal (InterPro:IPR015890), Anthranilate synthase component I and chorismate binding protein (InterPro:IPR005801), Isochorismate synthase (InterPro:IPR004561); BEST Arabidopsis thaliana protein match is: isochorismate synthase 1 (ICS1) / isochorismate mutase (TAIR:AT1G74710.1).  protein_id AT1G18870.2p  transcript_id AT1G18870.2  protein_id AT1G18870.2p  transcript_id AT1G18870.2  
At1g18871	chr1:006519309	0.0	C/6519309-6519485	AT1G18871.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G18871.1p  transcript_id AT1G18871.1  protein_id AT1G18871.1p  transcript_id AT1G18871.1  
At1g18880	chr1:006520800	0.0	W/6520800-6520890,6521395-6521612,6521710-6522263,6522341-6523241	AT1G18880.1  CDS  gene_syn F6A14.2, F6A14_2  go_component membrane|GO:0016020||IEA  go_process oligopeptide transport|GO:0006857||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT5G62680.1); Has 2446 Blast hits to 2303 proteins in 404 species: Archae - 0; Bacteria - 410; Metazoa - 511; Fungi - 250; Plants - 1134; Viruses - 0; Other Eukaryotes - 141 (source: NCBI BLink).  protein_id AT1G18880.1p  transcript_id AT1G18880.1  protein_id AT1G18880.1p  transcript_id AT1G18880.1  
At1g18879	chr1:006520941	0.0	W/6520941-6521124	AT1G18879.1  miRNA  gene_syn MICRORNA837A, MIR837A  gene MIR837A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: AUCAGUUUCUUGUUCGUUUCA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR837A (MICRORNA837A); miRNA  transcript_id AT1G18879.1  
At1g18890	chr1:006525085	0.0	C/6525085-6525736,6524808-6524951,6524563-6524715,6524358-6524473,6524082-6524249,6523759-6523989,6523468-6523641	AT1G18890.1  CDS  gene_syn ATCDPK1, CALCIUM-DEPENDENT PROTEIN KINASE, CALCIUM-DEPENDENT PROTEIN KINASE 1, CPK10, F6A14.1, F6A14_1  gene ATCDPK1  function encodes a calcium-dependent protein kinase whose gene expression is induced by dehydration and high salt. Kinase activity could not be detected in vitro.  go_component chloroplast|GO:0009507||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process response to water deprivation|GO:0009414|8078458|IEP  go_process response to salt stress|GO:0009651|8078458|IEP  go_process abscisic acid mediated signaling|GO:0009738|8943201|TAS  go_function protein kinase activity|GO:0004672|8943201|TAS  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  go_function kinase activity|GO:0016301||ISS  product ATCDPK1 (CALCIUM-DEPENDENT PROTEIN KINASE 1); calmodulin-dependent protein kinase/ kinase/ protein kinase  note CALCIUM-DEPENDENT PROTEIN KINASE 1 (ATCDPK1); FUNCTIONS IN: protein kinase activity, calmodulin-dependent protein kinase activity, kinase activity; INVOLVED IN: response to salt stress, response to water deprivation, abscisic acid mediated signaling, protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CPK30 (CALCIUM-DEPENDENT PROTEIN KINASE 30); calmodulin-dependent protein kinase/ kinase/ protein kinase (TAIR:AT1G74740.1); Has 93435 Blast hits to 89071 proteins in 2648 species: Archae - 70; Bacteria - 7997; Metazoa - 39757; Fungi - 11712; Plants - 14525; Viruses - 394; Other Eukaryotes - 18980 (source: NCBI BLink).  protein_id AT1G18890.1p  transcript_id AT1G18890.1  protein_id AT1G18890.1p  transcript_id AT1G18890.1  
At1g18900	chr1:006529778	0.0	W/6529778-6532360	AT1G18900.1  CDS  gene_syn F14D16.2, F14D16_2  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G74750.1); Has 22701 Blast hits to 5970 proteins in 182 species: Archae - 4; Bacteria - 22; Metazoa - 565; Fungi - 514; Plants - 20647; Viruses - 0; Other Eukaryotes - 949 (source: NCBI BLink).  protein_id AT1G18900.1p  transcript_id AT1G18900.1  protein_id AT1G18900.1p  transcript_id AT1G18900.1  
At1g18900	chr1:006529778	0.0	W/6529778-6532360	AT1G18900.2  CDS  gene_syn F14D16.2, F14D16_2  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G74750.1); Has 22701 Blast hits to 5970 proteins in 182 species: Archae - 4; Bacteria - 22; Metazoa - 565; Fungi - 514; Plants - 20647; Viruses - 0; Other Eukaryotes - 949 (source: NCBI BLink).  protein_id AT1G18900.2p  transcript_id AT1G18900.2  protein_id AT1G18900.2p  transcript_id AT1G18900.2  
At1g18910	chr1:006537694	0.0	C/6537694-6537993,6537045-6537263,6536753-6536947,6536316-6536671,6535978-6536203,6534212-6535854,6533852-6534073,6533632-6533766,6533304-6533538,6533148-6533207,6532900-6532971,6532706-6532807	AT1G18910.1  CDS  gene_syn F14D16.31, F14D16_31  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CTCHY-type (InterPro:IPR017921), Zinc finger, CHY-type (InterPro:IPR008913), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Haemerythrin/HHE cation-binding motif (InterPro:IPR012312); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G74770.1); Has 1162 Blast hits to 1080 proteins in 155 species: Archae - 0; Bacteria - 6; Metazoa - 545; Fungi - 104; Plants - 295; Viruses - 2; Other Eukaryotes - 210 (source: NCBI BLink).  protein_id AT1G18910.1p  transcript_id AT1G18910.1  protein_id AT1G18910.1p  transcript_id AT1G18910.1  
At1g18930	chr1:006542872	0.0	W/6542872-6543247	AT1G18930.1  mRNA_TE_gene  pseudo  gene_syn F14D16.7, F14D16_7  note Transposable element gene, pseudogene, hypothetical protein  
At1g18940	chr1:006543852	0.0	W/6543852-6544328,6544489-6545592	AT1G18940.1  CDS  gene_syn F14D16.8, F14D16_8  go_component endomembrane system|GO:0012505||IEA  product nodulin family protein  note nodulin family protein; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, male gametophyte; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nodulin family protein (TAIR:AT1G74780.1); Has 1313 Blast hits to 1279 proteins in 365 species: Archae - 5; Bacteria - 537; Metazoa - 33; Fungi - 164; Plants - 319; Viruses - 0; Other Eukaryotes - 255 (source: NCBI BLink).  protein_id AT1G18940.1p  transcript_id AT1G18940.1  protein_id AT1G18940.1p  transcript_id AT1G18940.1  
At1g18950	chr1:006546539	0.0	W/6546539-6546979,6547091-6547201,6548182-6548268,6548358-6548395,6548475-6548556,6548843-6548949,6549029-6549185,6549867-6549959,6550074-6550230,6550318-6550360,6550478-6550681,6550769-6551549	AT1G18950.1  CDS  gene_syn F14D16.10, F14D16_10  go_process biological_process|GO:0008150||ND  go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS  product aminoacyl-tRNA synthetase family  note aminoacyl-tRNA synthetase family; FUNCTIONS IN: aminoacyl-tRNA ligase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25580.1); Has 20587 Blast hits to 12449 proteins in 605 species: Archae - 33; Bacteria - 1436; Metazoa - 9619; Fungi - 2230; Plants - 832; Viruses - 219; Other Eukaryotes - 6218 (source: NCBI BLink).  protein_id AT1G18950.1p  transcript_id AT1G18950.1  protein_id AT1G18950.1p  transcript_id AT1G18950.1  
At1g18960	chr1:006552854	0.0	W/6552854-6552971,6553055-6553178,6553259-6553940	AT1G18960.1  CDS  gene_syn F14D16.11, F14D16_11  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: TDF1 (DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1); DNA binding / transcription factor (TAIR:AT3G28470.1); Has 3681 Blast hits to 3675 proteins in 258 species: Archae - 0; Bacteria - 0; Metazoa - 253; Fungi - 36; Plants - 3066; Viruses - 3; Other Eukaryotes - 323 (source: NCBI BLink).  protein_id AT1G18960.1p  transcript_id AT1G18960.1  protein_id AT1G18960.1p  transcript_id AT1G18960.1  
At1g18970	chr1:006554702	0.0	C/6554702-6555364	AT1G18970.1  CDS  gene_syn F14D16.12, F14D16_12, GERMIN-LIKE PROTEIN 4, GLP4  gene GLP4  function Encodes a germin-like protein with possible oxalate oxidase activity (based on GenBank record).  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  product GLP4 (GERMIN-LIKE PROTEIN 4); manganese ion binding / nutrient reservoir  note GERMIN-LIKE PROTEIN 4 (GLP4); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: germin-like protein, putative (TAIR:AT1G18980.1); Has 930 Blast hits to 925 proteins in 104 species: Archae - 0; Bacteria - 47; Metazoa - 0; Fungi - 26; Plants - 846; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G18970.1p  transcript_id AT1G18970.1  protein_id AT1G18970.1p  transcript_id AT1G18970.1  
At1g18980	chr1:006557364	0.0	C/6557364-6558026	AT1G18980.1  CDS  gene_syn F14D16.13, F14D16_13  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process biological_process|GO:0008150||ND  product germin-like protein, putative  note germin-like protein, putative; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: inflorescence meristem, hypocotyl, flower, root, pollen tube; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), Germin (InterPro:IPR001929), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: GLP4 (GERMIN-LIKE PROTEIN 4); manganese ion binding / nutrient reservoir (TAIR:AT1G18970.1); Has 892 Blast hits to 887 proteins in 90 species: Archae - 0; Bacteria - 42; Metazoa - 0; Fungi - 22; Plants - 817; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G18980.1p  transcript_id AT1G18980.1  protein_id AT1G18980.1p  transcript_id AT1G18980.1  
At1g18990	chr1:006559058	0.0	C/6559058-6560432,6558778-6558977	AT1G18990.1  CDS  gene_syn F14D16.14, F14D16_14  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74830.1); Has 1057 Blast hits to 929 proteins in 168 species: Archae - 2; Bacteria - 62; Metazoa - 394; Fungi - 83; Plants - 235; Viruses - 15; Other Eukaryotes - 266 (source: NCBI BLink).  protein_id AT1G18990.1p  transcript_id AT1G18990.1  protein_id AT1G18990.1p  transcript_id AT1G18990.1  
At1g19000	chr1:006562384	0.0	C/6562384-6562684,6561983-6562191,6561335-6561682	AT1G19000.1  CDS  gene_syn F14D16.15, F14D16_15  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT1G74840.1); Has 577 Blast hits to 576 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 521; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT1G19000.1p  transcript_id AT1G19000.1  protein_id AT1G19000.1p  transcript_id AT1G19000.1  
At1g19000	chr1:006562384	0.0	C/6562384-6562684,6561983-6562191,6561335-6561682	AT1G19000.2  CDS  gene_syn F14D16.15, F14D16_15  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT1G74840.1); Has 577 Blast hits to 576 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 521; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT1G19000.2p  transcript_id AT1G19000.2  protein_id AT1G19000.2p  transcript_id AT1G19000.2  
At1g19010	chr1:006565616	0.0	W/6565616-6565630,6565869-6566045,6566413-6567120,6567295-6567354	AT1G19010.1  CDS  gene_syn F14D16.16, F14D16_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74860.1); Has 274 Blast hits to 263 proteins in 74 species: Archae - 0; Bacteria - 12; Metazoa - 135; Fungi - 20; Plants - 41; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT1G19010.1p  transcript_id AT1G19010.1  protein_id AT1G19010.1p  transcript_id AT1G19010.1  
At1g19010	chr1:006565941	0.0	W/6565941-6566045,6566413-6567120,6567295-6567354	AT1G19010.2  CDS  gene_syn F14D16.16, F14D16_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74860.1); Has 188 Blast hits to 181 proteins in 57 species: Archae - 0; Bacteria - 7; Metazoa - 86; Fungi - 14; Plants - 38; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT1G19010.2p  transcript_id AT1G19010.2  protein_id AT1G19010.2p  transcript_id AT1G19010.2  
At1g19020	chr1:006568142	0.0	W/6568142-6568402	AT1G19020.1  CDS  gene_syn F14D16.17, F14D16_17  go_component cellular_component|GO:0005575||ND  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48180.1); Has 58 Blast hits to 58 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19020.1p  transcript_id AT1G19020.1  protein_id AT1G19020.1p  transcript_id AT1G19020.1  
At1g19025	chr1:006568920	0.0	W/6568920-6569123,6569198-6569303,6569380-6569600,6569682-6570800	AT1G19025.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DNA cross-link repair protein-related  note DNA cross-link repair protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: DNA repair metallo-beta-lactamase (InterPro:IPR011084); BEST Arabidopsis thaliana protein match is: DNA cross-link repair protein-related (TAIR:AT1G27410.1); Has 700 Blast hits to 685 proteins in 202 species: Archae - 16; Bacteria - 123; Metazoa - 235; Fungi - 137; Plants - 93; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT1G19025.1p  transcript_id AT1G19025.1  protein_id AT1G19025.1p  transcript_id AT1G19025.1  
At1g19030	chr1:006571184	0.0	W/6571184-6572937	AT1G19030.1  mRNA_TE_gene  pseudo  gene_syn F14D16.18, F14D16_18  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G13655.1); similar to putative AP endonuclease/reverse transcriptase [Brassica napus] (GB:AAM82604.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446)  
At1g19040	chr1:006576895	0.0	W/6576895-6577413	AT1G19040.1  CDS  gene_syn F14D16.19, F14D16_19  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC006 (Arabidopsis NAC domain containing protein 6); transcription factor (TAIR:AT1G03490.1); Has 385 Blast hits to 383 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 385; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19040.1p  transcript_id AT1G19040.1  protein_id AT1G19040.1p  transcript_id AT1G19040.1  
At1g19050	chr1:006578931	0.0	C/6578931-6579078,6578724-6578800,6578427-6578504,6578263-6578333,6577919-6578165	AT1G19050.1  CDS  gene_syn ARR7, F14D16.20, F14D16_20, RESPONSE REGULATOR 7  gene ARR7  function Encodes a member of the Arabidopsis response regulator (ARR) family, most closely related to ARR15. A two-component response regulator protein containing a phosphate accepting domain in the receiver domain but lacking a DNA binding domain in the output domain. Involved in response to cytokinin and meristem stem cell maintenance. Arr7 protein is stabilized by cytokinin.  go_component nucleus|GO:0005634|18642946|IDA  go_process two-component signal transduction system (phosphorelay)|GO:0000160|9482949|TAS  go_process response to cytokinin stimulus|GO:0009735|16407152|IEP  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_process cytokinin mediated signaling|GO:0009736|18065689|IMP  go_process response to chitin|GO:0010200|17722694|IEP  go_process stem cell maintenance|GO:0019827|16372013|IMP  go_function two-component response regulator activity|GO:0000156|11574878|ISS  go_function two-component response regulator activity|GO:0000156|12068096|ISS  go_function two-component response regulator activity|GO:0000156|9482949|ISS  go_function two-component response regulator activity|GO:0000156||ISS  go_function transcription regulator activity|GO:0030528|12068096|TAS  product ARR7 (RESPONSE REGULATOR 7); transcription regulator/ two-component response regulator  note RESPONSE REGULATOR 7 (ARR7); FUNCTIONS IN: transcription regulator activity, two-component response regulator activity; INVOLVED IN: cytokinin mediated signaling, stem cell maintenance, response to chitin, response to cytokinin stimulus, two-component signal transduction system (phosphorelay); LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver region (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: ARR15 (RESPONSE REGULATOR 15); transcription regulator/ two-component response regulator (TAIR:AT1G74890.1); Has 33512 Blast hits to 33099 proteins in 1553 species: Archae - 202; Bacteria - 28179; Metazoa - 12; Fungi - 430; Plants - 726; Viruses - 6; Other Eukaryotes - 3957 (source: NCBI BLink).  protein_id AT1G19050.1p  transcript_id AT1G19050.1  protein_id AT1G19050.1p  transcript_id AT1G19050.1  
At1g19060	chr1:006583518	0.0	C/6583518-6583601,6583228-6583374,6582926-6582989,6582730-6582839,6582563-6582652,6582066-6582434	AT1G19060.1  CDS  gene_syn F14D16.21, F14D16_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02770.1); Has 70 Blast hits to 69 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19060.1p  transcript_id AT1G19060.1  protein_id AT1G19060.1p  transcript_id AT1G19060.1  
At1g19070	chr1:006584454	0.0	W/6584454-6584705	AT1G19070.1  CDS  gene_syn F14D16.22, F14D16_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G22280.2); Has 938 Blast hits to 921 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 938; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19070.1p  transcript_id AT1G19070.1  protein_id AT1G19070.1p  transcript_id AT1G19070.1  
At1g19080	chr1:006585087	0.0	W/6585087-6585131,6585214-6585282,6585373-6585473,6585673-6585765,6585952-6586091,6586199-6586308	AT1G19080.1  CDS  gene_syn F14D16.33, PSF3, Partner of SLD5 3, TITAN 10, TTN10  gene TTN10  function This gene is predicted to encode a PSF3 component of the GINS complex. This complex has been implicated in the initiation of DNA replication in Xenopus. Mutations in this gene cause defects in embryo development.  go_component GINS complex|GO:0000811|17556508|ISS  go_process DNA-dependent DNA replication|GO:0006261|17556508|ISS  go_process embryonic development ending in seed dormancy|GO:0009793|15266054|IMP  go_function molecular_function|GO:0003674||ND  product TTN10 (TITAN 10)  note TITAN 10 (TTN10); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy, DNA-dependent DNA replication; LOCATED IN: GINS complex; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: GINS complex, Psf3 component (InterPro:IPR010492); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55490.1); Has 224 Blast hits to 224 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 76; Plants - 22; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G19080.1p  transcript_id AT1G19080.1  protein_id AT1G19080.1p  transcript_id AT1G19080.1  
At1g19086	chr1:006588542	0.0	W/6588542-6588575,6588652-6588819,6588919-6589004,6589083-6589256	AT1G19086.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19086.1p  transcript_id AT1G19086.1  protein_id AT1G19086.1p  transcript_id AT1G19086.1  
At1g19090	chr1:006590350	0.0	W/6590350-6591094,6591177-6591323,6591409-6591504,6591549-6591728,6591804-6592038,6592121-6592265,6592361-6592615	AT1G19090.1  CDS  gene_syn F14D16.24, F14D16_24, RKF2, receptor-like serine/threonine kinase 2  gene RKF2  function receptor-like serine/threonine kinase (RKF2)  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function receptor signaling protein serine/threonine kinase activity|GO:0004702|9687063|ISS  go_function kinase activity|GO:0016301||ISS  product RKF2 (receptor-like serine/threonine kinase 2); kinase/ receptor signaling protein serine/threonine kinase  note receptor-like serine/threonine kinase 2 (RKF2); FUNCTIONS IN: receptor signaling protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Serine/threonine protein kinase (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G40380.1); Has 80640 Blast hits to 79689 proteins in 2697 species: Archae - 53; Bacteria - 7500; Metazoa - 35044; Fungi - 6038; Plants - 17903; Viruses - 422; Other Eukaryotes - 13680 (source: NCBI BLink).  protein_id AT1G19090.1p  transcript_id AT1G19090.1  protein_id AT1G19090.1p  transcript_id AT1G19090.1  
At1g19100	chr1:006595560	0.0	W/6595560-6595878,6596043-6596117,6596199-6596233,6596566-6596644,6596748-6596837,6596998-6597073,6597184-6597262,6597340-6597468,6597915-6598013,6598110-6598196,6598464-6598610,6598707-6598799,6599093-6599144,6599259-6599370,6599621-6599790,6600164-6600273,6600528-6600607,6600694-6600736,6601043-6601159	AT1G19100.1  CDS  gene_syn F14D16.25, F14D16_25  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function ATP binding|GO:0005524||IEA  go_process biological_process|GO:0008150||ND  product ATP-binding region, ATPase-like domain-containing protein-related  note ATP-binding region, ATPase-like domain-containing protein-related; FUNCTIONS IN: ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATP-binding region, ATPase-like (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: ATP-binding region, ATPase-like domain-containing protein (TAIR:AT4G36290.1); Has 323 Blast hits to 319 proteins in 62 species: Archae - 0; Bacteria - 20; Metazoa - 166; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT1G19100.1p  transcript_id AT1G19100.1  protein_id AT1G19100.1p  transcript_id AT1G19100.1  
At1g19110	chr1:006602270	0.0	W/6602270-6602665,6602832-6602984,6603071-6603283,6603376-6603465,6603580-6603696,6603777-6604046,6604146-6604302,6604389-6604466,6604559-6604659,6604764-6604934,6605039-6605113,6605188-6605295,6605431-6605766	AT1G19110.1  CDS  gene_syn F14D16.26, F14D16_26  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product inter-alpha-trypsin inhibitor heavy chain-related  note inter-alpha-trypsin inhibitor heavy chain-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: inter-alpha-trypsin inhibitor heavy chain-related (TAIR:AT1G72500.1); Has 1260 Blast hits to 1251 proteins in 217 species: Archae - 8; Bacteria - 393; Metazoa - 471; Fungi - 34; Plants - 117; Viruses - 0; Other Eukaryotes - 237 (source: NCBI BLink).  protein_id AT1G19110.1p  transcript_id AT1G19110.1  protein_id AT1G19110.1p  transcript_id AT1G19110.1  
At1g19115	chr1:006606351	0.0	W/6606351-6606356,6606444-6606504,6606612-6606913,6607039-6607183,6607303-6607313	AT1G19115.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72490.1); Has 28 Blast hits to 28 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19115.1p  transcript_id AT1G19115.1  protein_id AT1G19115.1p  transcript_id AT1G19115.1  
At1g19115	chr1:006606351	0.0	W/6606351-6606356,6606444-6606504,6606612-6606913,6607039-6607183,6607657-6607667	AT1G19115.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72490.1); Has 28 Blast hits to 28 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19115.2p  transcript_id AT1G19115.2  protein_id AT1G19115.2p  transcript_id AT1G19115.2  
At1g19115	chr1:006606351	0.0	W/6606351-6606356,6606444-6606504,6606612-6606913,6607039-6607197	AT1G19115.3  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72490.1); Has 28 Blast hits to 28 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19115.3p  transcript_id AT1G19115.3  protein_id AT1G19115.3p  transcript_id AT1G19115.3  
At1g19120	chr1:006608288	0.0	W/6608288-6608348,6608497-6608565,6608653-6608768,6608872-6608934,6609085-6609162	AT1G19120.1  CDS  gene_syn F14D16.28, F14D16_28  go_component nucleus|GO:0005634||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative  note small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative (TAIR:AT3G14080.2); Has 797 Blast hits to 796 proteins in 157 species: Archae - 44; Bacteria - 0; Metazoa - 331; Fungi - 216; Plants - 115; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).  protein_id AT1G19120.1p  transcript_id AT1G19120.1  protein_id AT1G19120.1p  transcript_id AT1G19120.1  
At1g19130	chr1:006610420	0.0	C/6610420-6610555,6609973-6610094,6609545-6609865	AT1G19130.1  CDS  gene_syn F14D16.29, F14D16_29  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF985 (InterPro:IPR009327), RmlC-like jelly roll fold (InterPro:IPR014710); Has 778 Blast hits to 778 proteins in 280 species: Archae - 8; Bacteria - 513; Metazoa - 2; Fungi - 16; Plants - 22; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).  protein_id AT1G19130.1p  transcript_id AT1G19130.1  protein_id AT1G19130.1p  transcript_id AT1G19130.1  
At1g19140	chr1:006612106	0.0	C/6612106-6612414,6611920-6612027,6611650-6611811,6611398-6611569,6611238-6611311,6611026-6611136	AT1G19140.1  CDS  gene_syn F14D16.30, F14D16_30  go_process ubiquinone biosynthetic process|GO:0006744||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquinone biosynthetic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COQ9 (InterPro:IPR013718), Ubiquinone biosynthesis protein COQ9 (InterPro:IPR012762); Has 607 Blast hits to 607 proteins in 177 species: Archae - 0; Bacteria - 151; Metazoa - 114; Fungi - 62; Plants - 22; Viruses - 0; Other Eukaryotes - 258 (source: NCBI BLink).  protein_id AT1G19140.1p  transcript_id AT1G19140.1  protein_id AT1G19140.1p  transcript_id AT1G19140.1  
At1g19140	chr1:006612106	0.0	C/6612106-6612414,6611920-6612027,6611650-6611811,6611398-6611569,6611238-6611314,6611026-6611136	AT1G19140.2  CDS  gene_syn F14D16.30, F14D16_30  go_process ubiquinone biosynthetic process|GO:0006744||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquinone biosynthetic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COQ9 (InterPro:IPR013718), Ubiquinone biosynthesis protein COQ9 (InterPro:IPR012762); Has 598 Blast hits to 598 proteins in 175 species: Archae - 0; Bacteria - 149; Metazoa - 114; Fungi - 60; Plants - 22; Viruses - 0; Other Eukaryotes - 253 (source: NCBI BLink).  protein_id AT1G19140.2p  transcript_id AT1G19140.2  protein_id AT1G19140.2p  transcript_id AT1G19140.2  
At1g19150	chr1:006612806	0.0	W/6612806-6613085,6613169-6613683,6613782-6613799	AT1G19150.1  CDS  gene_syn LHCA2*1, LHCA6, PSI TYPE II CHLOROPHYLL A/B-BINDING PROTEIN, T29M8.2, T29M8_2  gene LHCA6  function PSI type II chlorophyll a/b-binding protein (Lhca2*1) mRNA,  go_component chloroplast|GO:0009507|18431481|IDA  go_component light-harvesting complex|GO:0030076||ISS  go_process response to blue light|GO:0009637|18820083|IEP  go_process response to red light|GO:0010114|18820083|IEP  go_process response to far red light|GO:0010218|18820083|IEP  go_process photosynthesis|GO:0015979||ISS  go_function chlorophyll binding|GO:0016168||ISS  product LHCA6; chlorophyll binding  note LHCA6; FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: LHCA2; chlorophyll binding (TAIR:AT3G61470.1); Has 1771 Blast hits to 1677 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1521; Viruses - 0; Other Eukaryotes - 248 (source: NCBI BLink).  protein_id AT1G19150.1p  transcript_id AT1G19150.1  protein_id AT1G19150.1p  transcript_id AT1G19150.1  
At1g19160	chr1:006614162	0.0	C/6614162-6615214	AT1G19160.1  CDS  gene_syn T29M8.3, T29M8_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G52610.1); Has 1084 Blast hits to 1065 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1084; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19160.1p  transcript_id AT1G19160.1  protein_id AT1G19160.1p  transcript_id AT1G19160.1  
At1g19170	chr1:006616777	0.0	W/6616777-6617247,6617562-6617682,6617762-6618010,6618100-6618253,6618350-6618875	AT1G19170.1  CDS  gene_syn T29M8.4, T29M8_4  go_component mitochondrion|GO:0005739||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT3G42950.1); Has 2514 Blast hits to 2510 proteins in 316 species: Archae - 2; Bacteria - 602; Metazoa - 8; Fungi - 955; Plants - 840; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT1G19170.1p  transcript_id AT1G19170.1  protein_id AT1G19170.1p  transcript_id AT1G19170.1  
At1g19180	chr1:006622312	0.0	W/6622312-6622474,6622673-6623271	AT1G19180.1  CDS  gene_syn JASMONATE-ZIM-DOMAIN PROTEIN 1, JAZ1, T29M8.5, T29M8_5, TIFY10A  gene JAZ1  function JAZ1 is a nuclear-localized protein involved in jasmonate signaling. JAZ1 transcript levels rise in response to a jasmonate stimulus. JAZ1 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ1:GUS fusion protein, presumably by stimulating ubiquitin-proteasome-mediated degradation. The Jas domain appears to be important for JAZ1-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2.  go_component nucleus|GO:0005634|17637677|IDA  go_process pollen development|GO:0009555|17637677|IMP  go_process response to jasmonic acid stimulus|GO:0009753|17637677|IEP  go_process jasmonic acid mediated signaling pathway|GO:0009867|17637677|IMP  go_process flower development|GO:0009908|17637677|IMP  go_process defense response to bacterium|GO:0042742|18547396|IMP  go_function protein binding|GO:0005515|17637677|IPI  product JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1); protein binding  note JASMONATE-ZIM-DOMAIN PROTEIN 1 (JAZ1); FUNCTIONS IN: protein binding; INVOLVED IN: flower development, response to jasmonic acid stimulus, defense response to bacterium, jasmonic acid mediated signaling pathway, pollen development; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: TIFY10B (TAIR:AT1G74950.1); Has 255 Blast hits to 250 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 255; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19180.1p  transcript_id AT1G19180.1  protein_id AT1G19180.1p  transcript_id AT1G19180.1  
At1g19180	chr1:006622708	0.0	W/6622708-6623271	AT1G19180.2  CDS  gene_syn JASMONATE-ZIM-DOMAIN PROTEIN 1, JAZ1, T29M8.5, T29M8_5, TIFY10A  gene JAZ1  function JAZ1 is a nuclear-localized protein involved in jasmonate signaling. JAZ1 transcript levels rise in response to a jasmonate stimulus. JAZ1 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ1:GUS fusion protein, presumably by stimulating ubiquitin-proteasome-mediated degradation. The Jas domain appears to be important for JAZ1-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2.  go_component nucleus|GO:0005634|17637677|IDA  go_process pollen development|GO:0009555|17637677|IMP  go_process response to jasmonic acid stimulus|GO:0009753|17637677|IEP  go_process jasmonic acid mediated signaling pathway|GO:0009867|17637677|IMP  go_process flower development|GO:0009908|17637677|IMP  go_process defense response to bacterium|GO:0042742|18547396|IMP  go_function protein binding|GO:0005515|17637677|IPI  product JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1); protein binding  note TIFY10A; FUNCTIONS IN: protein binding; INVOLVED IN: flower development, response to jasmonic acid stimulus, defense response to bacterium, jasmonic acid mediated signaling pathway, pollen development; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: TIFY10B (TAIR:AT1G74950.1); Has 261 Blast hits to 250 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 261; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19180.2p  transcript_id AT1G19180.2  protein_id AT1G19180.2p  transcript_id AT1G19180.2  
At1g19190	chr1:006623876	0.0	W/6623876-6624832	AT1G19190.1  CDS  gene_syn T29M8.6, T29M8_6  go_process metabolic process|GO:0008152||IEA  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  product hydrolase  note hydrolase; FUNCTIONS IN: hydrolase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDXG, active site (InterPro:IPR002168), Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: hydrolase (TAIR:AT2G03550.1); Has 5587 Blast hits to 5577 proteins in 861 species: Archae - 47; Bacteria - 2876; Metazoa - 576; Fungi - 522; Plants - 655; Viruses - 3; Other Eukaryotes - 908 (source: NCBI BLink).  protein_id AT1G19190.1p  transcript_id AT1G19190.1  protein_id AT1G19190.1p  transcript_id AT1G19190.1  
At1g19200	chr1:006625348	0.0	C/6625348-6625856,6625104-6625242	AT1G19200.1  CDS  gene_syn T29M8.7, T29M8_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product senescence-associated protein-related  note senescence-associated protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, male gametophyte, carpel, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: senescence-associated protein-related (TAIR:AT1G74940.1); Has 252 Blast hits to 252 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 252; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19200.1p  transcript_id AT1G19200.1  protein_id AT1G19200.1p  transcript_id AT1G19200.1  
At1g19210	chr1:006626973	0.0	C/6626973-6627530	AT1G19210.1  CDS  gene_syn T29M8.8, T29M8_8  function encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, LP.10 ten leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ORA47; DNA binding / transcription factor (TAIR:AT1G74930.1); Has 3671 Blast hits to 3604 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3665; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G19210.1p  transcript_id AT1G19210.1  protein_id AT1G19210.1p  transcript_id AT1G19210.1  
At1g19220	chr1:006632737	0.0	C/6632737-6632779,6632328-6632440,6632153-6632248,6632019-6632075,6631779-6631934,6631603-6631687,6631425-6631515,6630988-6631348,6630772-6630910,6628945-6630689,6628663-6628853,6628395-6628578	AT1G19220.1  CDS  gene_syn ARF11, ARF19, AUXIN RESPONSE FACTOR 19, AUXIN RESPONSE FACTOR11, IAA-REGULATED 22, IAA22, T29M8.9, T29M8_9  gene ARF19  function Encodes an auxin response factor that contains the conserved VP1-B3 DNA-binding domain at its N-terminus and the Aux/IAA-like domains III and IV present in most ARFs at its C-terminus. The protein interacts with IAA1 (yeast two hybrid) and other auxin response elements such as ER7 and ER9 (yeast one hybrid). ARF19 protein can complement many aspects of the arf7 mutant phenotype and , together with ARF7, is involved in the response to ethylene. In the arf7 arf19 double mutant, several auxin-responsive genes (e.g. IAA5, LBD16, LBD29 and LBD33) are no longer upregulated by auxin.  go_component nucleus|GO:0005634|17259263|IDA  go_process response to ethylene stimulus|GO:0009723|16461383|IMP  go_process response to auxin stimulus|GO:0009733|15659631|IMP  go_process response to auxin stimulus|GO:0009733|17259263|IMP  go_process response to auxin stimulus|GO:0009733||NAS  go_process lateral root primordium development|GO:0010386|17259263|IGI  go_process leaf development|GO:0048366|15960621|IGI  go_process lateral root development|GO:0048527|15960621|IGI  go_function DNA binding|GO:0003677|17259263|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  product ARF19 (AUXIN RESPONSE FACTOR 19); DNA binding / transcription factor  note AUXIN RESPONSE FACTOR 19 (ARF19); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to ethylene stimulus, response to auxin stimulus, lateral root primordium development, leaf development, lateral root development; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); DNA binding / transcription activator/ transcription factor/ transcription regulator (TAIR:AT5G20730.2); Has 57033 Blast hits to 27996 proteins in 936 species: Archae - 12; Bacteria - 2168; Metazoa - 20338; Fungi - 5636; Plants - 4610; Viruses - 204; Other Eukaryotes - 24065 (source: NCBI BLink).  protein_id AT1G19220.1p  transcript_id AT1G19220.1  protein_id AT1G19220.1p  transcript_id AT1G19220.1  
At1g19230	chr1:006644189	0.0	W/6644189-6644864,6644937-6645096,6646070-6646118,6646201-6646314,6646392-6646476,6646555-6646817,6646913-6647296,6647389-6647484,6647575-6647690,6647772-6647945,6648028-6648181,6648267-6648458,6648551-6648679,6648761-6648839,6649040-6649149	AT1G19230.1  CDS  gene_syn T29M8.10, T29M8_10  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function iron ion binding|GO:0005506||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor|GO:0050664||IEA  go_process defense response|GO:0006952|9628030|TAS  product respiratory burst oxidase protein E (RbohE) / NADPH oxidase  note respiratory burst oxidase protein E (RbohE) / NADPH oxidase; FUNCTIONS IN: in 7 functions; INVOLVED IN: defense response; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-HAND 1 (InterPro:IPR018247), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), NADPH oxidase Respiratory burst (InterPro:IPR013623), Ferric reductase, NAD binding (InterPro:IPR013121), EF-HAND 2 (InterPro:IPR018249), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F); NAD(P)H oxidase (TAIR:AT1G64060.1); Has 1639 Blast hits to 1528 proteins in 273 species: Archae - 4; Bacteria - 228; Metazoa - 607; Fungi - 399; Plants - 264; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).  protein_id AT1G19230.1p  transcript_id AT1G19230.1  protein_id AT1G19230.1p  transcript_id AT1G19230.1  
At1g19240	chr1:006650203	0.0	C/6650203-6650384,6649562-6649694	AT1G19240.1  CDS  gene_syn T29M8.11, T29M8_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19240.1p  transcript_id AT1G19240.1  protein_id AT1G19240.1p  transcript_id AT1G19240.1  
At1g19250	chr1:006652598	0.0	C/6652598-6653053,6652141-6652381,6651663-6651841,6651227-6651576,6650656-6651022	AT1G19250.1  CDS  gene_syn FLAVIN-DEPENDENT MONOOXYGENASE 1, FMO1, T29M8.12, T29M8_12  gene FMO1  function FMO1 is required for full expression of TIR-NB-LRR conditioned resistance to avirulent pathogens and for basal resistance to invasive virulent pathogens. Functions in an EDS1-regulated but SA-independent mechanism that promotes resistance and cell death at pathogen infection sites.  go_component endomembrane system|GO:0012505||IEA  go_component intrinsic to endoplasmic reticulum membrane|GO:0031227||IEA  go_function flavin-containing monooxygenase activity|GO:0004499||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_process plant-type hypersensitive response|GO:0009626|16531493|IMP  go_process systemic acquired resistance|GO:0009627|17419843|IEP  go_process defense response signaling pathway, resistance gene-dependent|GO:0009870|16531493|IMP  go_process defense response signaling pathway, resistance gene-independent|GO:0010204|16856982|IMP  go_process defense response to bacterium|GO:0042742|16856982|IMP  go_process defense response to fungus|GO:0050832|16856982|IMP  go_process response to other organism|GO:0051707|16531493|IEP  go_function monooxygenase activity|GO:0004497||ISS  product FMO1 (FLAVIN-DEPENDENT MONOOXYGENASE 1); FAD binding / NADP or NADPH binding / electron carrier/ flavin-containing monooxygenase/ monooxygenase/ oxidoreductase  note FLAVIN-DEPENDENT MONOOXYGENASE 1 (FMO1); FUNCTIONS IN: in 6 functions; INVOLVED IN: in 7 processes; LOCATED IN: endomembrane system, intrinsic to endoplasmic reticulum membrane; EXPRESSED IN: stem, leaf whorl, sepal, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960), Dimethylaniline monooxygenase, N-oxide-forming (InterPro:IPR012143), Flavin-containing amine oxidase (InterPro:IPR001613); BEST Arabidopsis thaliana protein match is: flavin-containing monooxygenase family protein / FMO family protein (TAIR:AT5G45180.1); Has 5245 Blast hits to 5138 proteins in 545 species: Archae - 0; Bacteria - 2026; Metazoa - 645; Fungi - 815; Plants - 447; Viruses - 0; Other Eukaryotes - 1312 (source: NCBI BLink).  protein_id AT1G19250.1p  transcript_id AT1G19250.1  protein_id AT1G19250.1p  transcript_id AT1G19250.1  
At1g19260	chr1:006657260	0.0	C/6657260-6659569	AT1G19260.1  CDS  gene_syn T29M8.13, T29M8_13  go_function protein dimerization activity|GO:0046983||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product hAT dimerisation domain-containing protein  note hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, TTF-type (InterPro:IPR006580); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09660.1); Has 497 Blast hits to 459 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 317; Fungi - 1; Plants - 171; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G19260.1p  transcript_id AT1G19260.1  protein_id AT1G19260.1p  transcript_id AT1G19260.1  
At1g19270	chr1:006663327	0.0	W/6663327-6663512,6663622-6663715,6663823-6664051,6664151-6664271,6664370-6664453,6664583-6664702,6664805-6665017,6665118-6665296,6665379-6665437,6665532-6665845	AT1G19270.1  CDS  gene_syn DA 1, DA1, T29M8.14, T29M8_14  gene DA1  go_process negative regulation of organ growth|GO:0046621|18483219|IMP  go_process seed morphogenesis|GO:0048317|18483219|IMP  go_process ovule morphogenesis|GO:0048482|18483219|IMP  go_function ubiquitin binding|GO:0043130|18483219|IPI  product DA1 (DA 1); ubiquitin binding  note DA 1 (DA1); FUNCTIONS IN: ubiquitin binding; INVOLVED IN: seed morphogenesis, ovule morphogenesis, negative regulation of organ growth; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781), Ubiquitin interacting motif (InterPro:IPR003903); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT4G36860.1); Has 3015 Blast hits to 2198 proteins in 128 species: Archae - 0; Bacteria - 16; Metazoa - 2644; Fungi - 45; Plants - 90; Viruses - 0; Other Eukaryotes - 220 (source: NCBI BLink).  protein_id AT1G19270.1p  transcript_id AT1G19270.1  protein_id AT1G19270.1p  transcript_id AT1G19270.1  
At1g19290	chr1:006666249	0.0	W/6666249-6668963	AT1G19290.1  CDS  go_component mitochondrion|GO:0005739||IEA  product unknown protein  note LOCATED IN: mitochondrion; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G55840.1); Has 31003 Blast hits to 6161 proteins in 194 species: Archae - 6; Bacteria - 22; Metazoa - 935; Fungi - 736; Plants - 27904; Viruses - 0; Other Eukaryotes - 1400 (source: NCBI BLink).  protein_id AT1G19290.1p  transcript_id AT1G19290.1  protein_id AT1G19290.1p  transcript_id AT1G19290.1  
At1g19300	chr1:006671451	0.0	C/6671451-6672506	AT1G19300.1  CDS  gene_syn F18O14.2, F18O14_2, GALACTURONOSYLTRANSFERASE-LIKE 1, GAOLAOZHUANGREN 1, GATL1, GLZ1, PARVUS  gene PARVUS  function The PARVUS/GLZ1 gene encodes a putative family 8 glycosyl transferase that contributes to xylan biosynthesis. Its gene expression shows good co-variance with the IRX3 gene involved in secondary cell wall synthesis. PARVUS/GLZ1 is predicted to have galacturonosyltransferase activity and may be involved in the formation of the complex oligosaccharide sequence present at the reducing end of xylan. PARVUS is expressed in cells undergoing secondary wall thickening, and parvus mutants have thinner cell walls.  go_component endoplasmic reticulum|GO:0005783|17991630|IDA  go_process xylem and phloem pattern formation|GO:0010051|17944810|IMP  go_process glucuronoxylan biosynthetic process|GO:0010417|17944810|IMP  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_process multicellular organism reproduction|GO:0032504|17944810|IMP  go_process leaf development|GO:0048366|17944810|IMP  go_process cell wall thickening|GO:0052386|17991630|IMP  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS  product PARVUS (PARVUS); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note PARVUS (PARVUS); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: in 6 processes; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: GATL2 (Galacturonosyltransferase-like 2); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT3G50760.1); Has 992 Blast hits to 984 proteins in 221 species: Archae - 0; Bacteria - 408; Metazoa - 127; Fungi - 0; Plants - 416; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT1G19300.1p  transcript_id AT1G19300.1  protein_id AT1G19300.1p  transcript_id AT1G19300.1  
At1g19310	chr1:006676424	0.0	C/6676424-6677104	AT1G19310.1  CDS  gene_syn F18O14.3, F18O14_3  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G23780.1); Has 3650 Blast hits to 3643 proteins in 226 species: Archae - 0; Bacteria - 2; Metazoa - 2420; Fungi - 377; Plants - 427; Viruses - 21; Other Eukaryotes - 403 (source: NCBI BLink).  protein_id AT1G19310.1p  transcript_id AT1G19310.1  protein_id AT1G19310.1p  transcript_id AT1G19310.1  
At1g19320	chr1:006679327	0.0	W/6679327-6679381,6679490-6680178	AT1G19320.1  CDS  gene_syn F18O14.4, F18O14_4  go_component endomembrane system|GO:0012505||IEA  go_process response to other organism|GO:0051707||ISS  go_function molecular_function|GO:0003674||ND  product pathogenesis-related thaumatin family protein  note pathogenesis-related thaumatin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75050.1); Has 1059 Blast hits to 1044 proteins in 146 species: Archae - 0; Bacteria - 27; Metazoa - 45; Fungi - 43; Plants - 929; Viruses - 5; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G19320.1p  transcript_id AT1G19320.1  protein_id AT1G19320.1p  transcript_id AT1G19320.1  
At1g19330	chr1:006683078	0.0	C/6683078-6683290,6681683-6681809,6681361-6681500,6681206-6681268,6681040-6681108,6680824-6680940	AT1G19330.2  CDS  gene_syn F18O14.5, F18O14_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75060.1); Has 85 Blast hits to 85 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 32; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G19330.2p  transcript_id AT1G19330.2  protein_id AT1G19330.2p  transcript_id AT1G19330.2  
At1g19330	chr1:006683078	0.0	C/6683078-6683290,6681683-6681809,6681361-6681515,6681206-6681268,6681040-6681108,6680824-6680940	AT1G19330.1  CDS  gene_syn F18O14.5, F18O14_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75060.1); Has 85 Blast hits to 85 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 32; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G19330.1p  transcript_id AT1G19330.1  protein_id AT1G19330.1p  transcript_id AT1G19330.1  
At1g19340	chr1:006684798	0.0	W/6684798-6685293,6685372-6685502,6685618-6685651,6685810-6685885,6685974-6686151,6686245-6686334,6686420-6686519,6686659-6686798	AT1G19340.1  CDS  gene_syn F18O14.6, F18O14_6  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_process methylation|GO:0032259||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757||ISS  product methyltransferase MT-A70 family protein  note methyltransferase MT-A70 family protein; FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity, nucleic acid binding; INVOLVED IN: methylation, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: N-6 adenine-specific DNA methylase, conserved site (InterPro:IPR002052), MT-A70 (InterPro:IPR007757); Has 423 Blast hits to 423 proteins in 157 species: Archae - 4; Bacteria - 134; Metazoa - 77; Fungi - 56; Plants - 33; Viruses - 2; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT1G19340.1p  transcript_id AT1G19340.1  protein_id AT1G19340.1p  transcript_id AT1G19340.1  
At1g19350	chr1:006688680	0.0	W/6688680-6688738,6688834-6689104,6689422-6690165	AT1G19350.3  CDS  gene_syn 107 PROTEIN, BES1, BRASSINAZOLE-RESISTANT 2, BRI1-EMS-SUPPRESSOR 1, BZR2, F18O14.7, F18O14_7  gene BES1  function Encodes brassinosteroid (BR) signalling protein that accumulates in the nucleus as dephosphorylated form in response to BRs. Is phosphorylated by the BIN2 GSK3 kinase. It synergistically interacts with BIM1 to bind to E box sequences (CANNTG). The protein contains a nuclear localization signal (NLS), followed by a highly conserved amino-terminal domain (N) shared by all family members, a BIN2 phosphorylation domain (P), a PEST motif, involved in protein degradation in the absence of BR, and a carboxyl-terminal domain. BES1 can interact with the ELF6 and REF6 Jumonji N/C-domain containing proteins and may direct them to modify histone methylation upstream of some brassinosteroid responsive-genes  go_component nucleus|GO:0005634|12427989|IDA  go_component cytosol|GO:0005829|17681130|IDA  go_process brassinosteroid mediated signaling|GO:0009742|12007405|IGI  go_function transcription factor activity|GO:0003700|15680330|IDA  go_function protein binding|GO:0005515|12427989|IPI  go_function protein binding|GO:0005515|15680330|IPI  go_function transcription regulator activity|GO:0030528|11970900|TAS  product BES1 (BRI1-EMS-SUPPRESSOR 1); protein binding / transcription factor/ transcription regulator  note BRI1-EMS-SUPPRESSOR 1 (BES1); FUNCTIONS IN: protein binding, transcription factor activity, transcription regulator activity; INVOLVED IN: brassinosteroid mediated signaling; LOCATED IN: cytosol, nucleus; CONTAINS InterPro DOMAIN/s: BZR1, transcriptional repressor (InterPro:IPR008540); BEST Arabidopsis thaliana protein match is: BZR1 (BRASSINAZOLE-RESISTANT 1); DNA binding / transcription regulator/ transcription repressor (TAIR:AT1G75080.2); Has 2461 Blast hits to 379 proteins in 69 species: Archae - 0; Bacteria - 14; Metazoa - 129; Fungi - 69; Plants - 172; Viruses - 0; Other Eukaryotes - 2077 (source: NCBI BLink).  protein_id AT1G19350.3p  transcript_id AT1G19350.3  protein_id AT1G19350.3p  transcript_id AT1G19350.3  
At1g19350	chr1:006688841	0.0	W/6688841-6689104,6689422-6690165	AT1G19350.1  CDS  gene_syn 107 PROTEIN, BES1, BRASSINAZOLE-RESISTANT 2, BRI1-EMS-SUPPRESSOR 1, BZR2, F18O14.7, F18O14_7  gene BES1  function Encodes brassinosteroid (BR) signalling protein that accumulates in the nucleus as dephosphorylated form in response to BRs. Is phosphorylated by the BIN2 GSK3 kinase. It synergistically interacts with BIM1 to bind to E box sequences (CANNTG). The protein contains a nuclear localization signal (NLS), followed by a highly conserved amino-terminal domain (N) shared by all family members, a BIN2 phosphorylation domain (P), a PEST motif, involved in protein degradation in the absence of BR, and a carboxyl-terminal domain. BES1 can interact with the ELF6 and REF6 Jumonji N/C-domain containing proteins and may direct them to modify histone methylation upstream of some brassinosteroid responsive-genes  go_component nucleus|GO:0005634|12427989|IDA  go_component cytosol|GO:0005829|17681130|IDA  go_process brassinosteroid mediated signaling|GO:0009742|12007405|IGI  go_function transcription factor activity|GO:0003700|15680330|IDA  go_function protein binding|GO:0005515|12427989|IPI  go_function protein binding|GO:0005515|15680330|IPI  go_function transcription regulator activity|GO:0030528|11970900|TAS  product BES1 (BRI1-EMS-SUPPRESSOR 1); protein binding / transcription factor/ transcription regulator  note BRI1-EMS-SUPPRESSOR 1 (BES1); FUNCTIONS IN: protein binding, transcription factor activity, transcription regulator activity; INVOLVED IN: brassinosteroid mediated signaling; LOCATED IN: cytosol, nucleus; CONTAINS InterPro DOMAIN/s: BZR1, transcriptional repressor (InterPro:IPR008540); BEST Arabidopsis thaliana protein match is: BZR1 (BRASSINAZOLE-RESISTANT 1); DNA binding / transcription regulator/ transcription repressor (TAIR:AT1G75080.2); Has 2803 Blast hits to 366 proteins in 68 species: Archae - 0; Bacteria - 14; Metazoa - 127; Fungi - 62; Plants - 169; Viruses - 0; Other Eukaryotes - 2431 (source: NCBI BLink).  protein_id AT1G19350.1p  transcript_id AT1G19350.1  protein_id AT1G19350.1p  transcript_id AT1G19350.1  
At1g19350	chr1:006688841	0.0	W/6688841-6689104,6689422-6690165	AT1G19350.4  CDS  gene_syn 107 PROTEIN, BES1, BRASSINAZOLE-RESISTANT 2, BRI1-EMS-SUPPRESSOR 1, BZR2, F18O14.7, F18O14_7  gene BES1  function Encodes brassinosteroid (BR) signalling protein that accumulates in the nucleus as dephosphorylated form in response to BRs. Is phosphorylated by the BIN2 GSK3 kinase. It synergistically interacts with BIM1 to bind to E box sequences (CANNTG). The protein contains a nuclear localization signal (NLS), followed by a highly conserved amino-terminal domain (N) shared by all family members, a BIN2 phosphorylation domain (P), a PEST motif, involved in protein degradation in the absence of BR, and a carboxyl-terminal domain. BES1 can interact with the ELF6 and REF6 Jumonji N/C-domain containing proteins and may direct them to modify histone methylation upstream of some brassinosteroid responsive-genes  go_component nucleus|GO:0005634|12427989|IDA  go_component cytosol|GO:0005829|17681130|IDA  go_process brassinosteroid mediated signaling|GO:0009742|12007405|IGI  go_function transcription factor activity|GO:0003700|15680330|IDA  go_function protein binding|GO:0005515|12427989|IPI  go_function protein binding|GO:0005515|15680330|IPI  go_function transcription regulator activity|GO:0030528|11970900|TAS  product BES1 (BRI1-EMS-SUPPRESSOR 1); protein binding / transcription factor/ transcription regulator  note BRI1-EMS-SUPPRESSOR 1 (BES1); FUNCTIONS IN: protein binding, transcription factor activity, transcription regulator activity; INVOLVED IN: brassinosteroid mediated signaling; LOCATED IN: cytosol, nucleus; CONTAINS InterPro DOMAIN/s: BZR1, transcriptional repressor (InterPro:IPR008540); BEST Arabidopsis thaliana protein match is: BZR1 (BRASSINAZOLE-RESISTANT 1); DNA binding / transcription regulator/ transcription repressor (TAIR:AT1G75080.2); Has 2803 Blast hits to 366 proteins in 68 species: Archae - 0; Bacteria - 14; Metazoa - 127; Fungi - 62; Plants - 169; Viruses - 0; Other Eukaryotes - 2431 (source: NCBI BLink).  protein_id AT1G19350.4p  transcript_id AT1G19350.4  protein_id AT1G19350.4p  transcript_id AT1G19350.4  
At1g19350	chr1:006688841	0.0	W/6688841-6689104,6689422-6690165	AT1G19350.5  CDS  gene_syn 107 PROTEIN, BES1, BRASSINAZOLE-RESISTANT 2, BRI1-EMS-SUPPRESSOR 1, BZR2, F18O14.7, F18O14_7  gene BES1  function Encodes brassinosteroid (BR) signalling protein that accumulates in the nucleus as dephosphorylated form in response to BRs. Is phosphorylated by the BIN2 GSK3 kinase. It synergistically interacts with BIM1 to bind to E box sequences (CANNTG). The protein contains a nuclear localization signal (NLS), followed by a highly conserved amino-terminal domain (N) shared by all family members, a BIN2 phosphorylation domain (P), a PEST motif, involved in protein degradation in the absence of BR, and a carboxyl-terminal domain. BES1 can interact with the ELF6 and REF6 Jumonji N/C-domain containing proteins and may direct them to modify histone methylation upstream of some brassinosteroid responsive-genes  go_component nucleus|GO:0005634|12427989|IDA  go_component cytosol|GO:0005829|17681130|IDA  go_process brassinosteroid mediated signaling|GO:0009742|12007405|IGI  go_function transcription factor activity|GO:0003700|15680330|IDA  go_function protein binding|GO:0005515|12427989|IPI  go_function protein binding|GO:0005515|15680330|IPI  go_function transcription regulator activity|GO:0030528|11970900|TAS  product BES1 (BRI1-EMS-SUPPRESSOR 1); protein binding / transcription factor/ transcription regulator  note BRI1-EMS-SUPPRESSOR 1 (BES1); FUNCTIONS IN: protein binding, transcription factor activity, transcription regulator activity; INVOLVED IN: brassinosteroid mediated signaling; LOCATED IN: cytosol, nucleus; CONTAINS InterPro DOMAIN/s: BZR1, transcriptional repressor (InterPro:IPR008540); BEST Arabidopsis thaliana protein match is: BZR1 (BRASSINAZOLE-RESISTANT 1); DNA binding / transcription regulator/ transcription repressor (TAIR:AT1G75080.2); Has 2803 Blast hits to 366 proteins in 68 species: Archae - 0; Bacteria - 14; Metazoa - 127; Fungi - 62; Plants - 169; Viruses - 0; Other Eukaryotes - 2431 (source: NCBI BLink).  protein_id AT1G19350.5p  transcript_id AT1G19350.5  protein_id AT1G19350.5p  transcript_id AT1G19350.5  
At1g19350	chr1:006688841	0.0	W/6688841-6689104,6689422-6690165	AT1G19350.6  CDS  gene_syn 107 PROTEIN, BES1, BRASSINAZOLE-RESISTANT 2, BRI1-EMS-SUPPRESSOR 1, BZR2, F18O14.7, F18O14_7  gene BES1  function Encodes brassinosteroid (BR) signalling protein that accumulates in the nucleus as dephosphorylated form in response to BRs. Is phosphorylated by the BIN2 GSK3 kinase. It synergistically interacts with BIM1 to bind to E box sequences (CANNTG). The protein contains a nuclear localization signal (NLS), followed by a highly conserved amino-terminal domain (N) shared by all family members, a BIN2 phosphorylation domain (P), a PEST motif, involved in protein degradation in the absence of BR, and a carboxyl-terminal domain. BES1 can interact with the ELF6 and REF6 Jumonji N/C-domain containing proteins and may direct them to modify histone methylation upstream of some brassinosteroid responsive-genes  go_component nucleus|GO:0005634|12427989|IDA  go_component cytosol|GO:0005829|17681130|IDA  go_process brassinosteroid mediated signaling|GO:0009742|12007405|IGI  go_function transcription factor activity|GO:0003700|15680330|IDA  go_function protein binding|GO:0005515|12427989|IPI  go_function protein binding|GO:0005515|15680330|IPI  go_function transcription regulator activity|GO:0030528|11970900|TAS  product BES1 (BRI1-EMS-SUPPRESSOR 1); protein binding / transcription factor/ transcription regulator  note BRI1-EMS-SUPPRESSOR 1 (BES1); FUNCTIONS IN: protein binding, transcription factor activity, transcription regulator activity; INVOLVED IN: brassinosteroid mediated signaling; LOCATED IN: cytosol, nucleus; CONTAINS InterPro DOMAIN/s: BZR1, transcriptional repressor (InterPro:IPR008540); BEST Arabidopsis thaliana protein match is: BZR1 (BRASSINAZOLE-RESISTANT 1); DNA binding / transcription regulator/ transcription repressor (TAIR:AT1G75080.2); Has 2803 Blast hits to 366 proteins in 68 species: Archae - 0; Bacteria - 14; Metazoa - 127; Fungi - 62; Plants - 169; Viruses - 0; Other Eukaryotes - 2431 (source: NCBI BLink).  protein_id AT1G19350.6p  transcript_id AT1G19350.6  protein_id AT1G19350.6p  transcript_id AT1G19350.6  
At1g19360	chr1:006692041	0.0	C/6692041-6692211,6690672-6691787	AT1G19360.1  CDS  gene_syn F18O14.8, F18O14_8  go_component endoplasmic reticulum|GO:0005783||IEA  product unknown protein  note LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: RRA2 (REDUCED RESIDUAL ARABINOSE 2) (TAIR:AT1G75110.1); Has 165 Blast hits to 162 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 152; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G19360.1p  transcript_id AT1G19360.1  protein_id AT1G19360.1p  transcript_id AT1G19360.1  
At1g19370	chr1:006692904	0.0	C/6692904-6694721	AT1G19370.1  CDS  gene_syn F18O14.9, F18O14_9  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  product unknown protein  note unknown protein; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75140.1); Has 23 Blast hits to 23 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G19370.1p  transcript_id AT1G19370.1  protein_id AT1G19370.1p  transcript_id AT1G19370.1  
At1g19371	chr1:006695420	0.0	C/6695420-6695609	AT1G19371.1  miRNA  gene_syn MICRORNA169H, MIR169H  gene MIR169H  function Encodes a microRNA that targets several HAP2 family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UAGCCAAGGAUGACUUGCCUG  go_process gene silencing by miRNA|GO:0035195|15851028|IDA  product MIR169H (MICRORNA169H); miRNA  transcript_id AT1G19371.1  
At1g19373	chr1:006697178	0.0	W/6697178-6697253	AT1G19373.1  snoRNA  gene_syn 52195.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT1G19373.1  
At1g19376	chr1:006697438	0.0	W/6697438-6697524	AT1G19376.1  snoRNA  gene_syn 52195.SNORNA00002  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT1G19376.1  
At1g19380	chr1:006698129	0.0	W/6698129-6698344,6698435-6698662	AT1G19380.1  CDS  gene_syn F18O14.10, F18O14_10  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1195 (InterPro:IPR010608); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65650.1); Has 43 Blast hits to 43 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19380.1p  transcript_id AT1G19380.1  protein_id AT1G19380.1p  transcript_id AT1G19380.1  
At1g19390	chr1:006702354	0.0	C/6702354-6703368,6702102-6702224,6700772-6702000	AT1G19390.1  CDS  gene_syn F18O14.11, F18O14_11  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function kinase activity|GO:0016301||ISS  product wall-associated kinase, putative  note wall-associated kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system, integral to membrane; CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695), Protein kinase, ATP binding site (InterPro:IPR017441), EGF-like calcium-binding, conserved site (InterPro:IPR018097), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: wall-associated kinase, putative (TAIR:AT4G31100.1); Has 87425 Blast hits to 85837 proteins in 3112 species: Archae - 54; Bacteria - 7620; Metazoa - 38747; Fungi - 6816; Plants - 19037; Viruses - 452; Other Eukaryotes - 14699 (source: NCBI BLink).  protein_id AT1G19390.1p  transcript_id AT1G19390.1  protein_id AT1G19390.1p  transcript_id AT1G19390.1  
At1g19392	chr1:006708557	0.0	W/6708557-6709175	AT1G19392.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 3.5e-10 P-value blast match to reverse transcriptase (Ty1_Copia-element) (Arabidopsis thaliana)  
At1g19394	chr1:006709773	0.0	W/6709773-6709783,6709889-6709958,6710468-6710605	AT1G19394.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19394.1p  transcript_id AT1G19394.1  protein_id AT1G19394.1p  transcript_id AT1G19394.1  
At1g19397	chr1:006711040	0.0	W/6711040-6711336	AT1G19397.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G19397.1p  transcript_id AT1G19397.1  protein_id AT1G19397.1p  transcript_id AT1G19397.1  
At1g19400	chr1:006712981	0.0	C/6712981-6713676,6712222-6712437	AT1G19400.1  CDS  gene_syn F18O14.16, F18O14_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75180.3); Has 70 Blast hits to 70 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19400.1p  transcript_id AT1G19400.1  protein_id AT1G19400.1p  transcript_id AT1G19400.1  
At1g19400	chr1:006712981	0.0	C/6712981-6713676,6712222-6712437	AT1G19400.2  CDS  gene_syn F18O14.16, F18O14_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75180.3); Has 70 Blast hits to 70 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19400.2p  transcript_id AT1G19400.2  protein_id AT1G19400.2p  transcript_id AT1G19400.2  
At1g19410	chr1:006716327	0.0	C/6716327-6716439,6715507-6716249,6715228-6715268,6715001-6715138,6714789-6714920,6714492-6714632	AT1G19410.1  CDS  gene_syn F18O14.17, F18O14_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G62970.1); Has 533 Blast hits to 521 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 533; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19410.1p  transcript_id AT1G19410.1  protein_id AT1G19410.1p  transcript_id AT1G19410.1  
At1g19415	chr1:006719448	0.0	W/6719448-6720654	AT1G19415.1  mRNA_TE_gene  pseudo  gene_syn F18O14.19  note Transposable element gene, copia-like retrotransposon family, has a 6.1e-43 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At1g19420	chr1:006721435	0.0	W/6721435-6723930	AT1G19420.1  pseudogenic_transcript  pseudo  gene_syn F18O14.39  note pseudogene, CHP-rich zinc finger protein  
At1g19430	chr1:006726685	0.0	C/6726685-6727533,6726456-6726605,6726097-6726367,6725923-6726015,6725581-6725755,6725241-6725483,6724955-6725149,6724669-6724867	AT1G19430.1  CDS  gene_syn F18O14.20, F18O14_20  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  product dehydration-responsive protein-related  note dehydration-responsive protein-related; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive protein-related (TAIR:AT5G64030.1); Has 7615 Blast hits to 5355 proteins in 417 species: Archae - 11; Bacteria - 419; Metazoa - 2915; Fungi - 818; Plants - 766; Viruses - 126; Other Eukaryotes - 2560 (source: NCBI BLink).  protein_id AT1G19430.1p  transcript_id AT1G19430.1  protein_id AT1G19430.1p  transcript_id AT1G19430.1  
At1g19440	chr1:006729119	0.0	W/6729119-6730669	AT1G19440.1  CDS  gene_syn 3-KETOACYL-COA SYNTHASE 4, F18O14.21, F18O14_21, KCS4  gene KCS4  function Encodes KCS4, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).  go_component membrane|GO:0016020||IEA  go_function catalytic activity|GO:0003824||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_process very-long-chain fatty acid metabolic process|GO:0000038|10330468|IDA  go_process cuticle development|GO:0042335|10330468|IDA  product KCS4 (3-KETOACYL-COA SYNTHASE 4); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups  note 3-KETOACYL-COA SYNTHASE 4 (KCS4); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: very-long-chain fatty acid metabolic process, cuticle development; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038), Chalcone and stilbene synthases, C-terminal (InterPro:IPR012328); BEST Arabidopsis thaliana protein match is: KCS9 (3-KETOACYL-COA SYNTHASE 9); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups (TAIR:AT2G16280.1); Has 2782 Blast hits to 2777 proteins in 653 species: Archae - 0; Bacteria - 742; Metazoa - 0; Fungi - 7; Plants - 1940; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT1G19440.1p  transcript_id AT1G19440.1  protein_id AT1G19440.1p  transcript_id AT1G19440.1  
At1g19450	chr1:006734436	0.0	C/6734436-6734633,6734251-6734313,6734050-6734139,6733875-6733934,6733721-6733786,6733566-6733631,6733395-6733470,6733222-6733286,6733044-6733136,6732887-6732967,6732720-6732804,6732575-6732621,6732447-6732509,6732293-6732352,6732137-6732202,6731981-6732040,6731671-6731898	AT1G19450.1  CDS  gene_syn F18O14.22, F18O14_22  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product integral membrane protein, putative / sugar transporter family protein  note integral membrane protein, putative / sugar transporter family protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: integral membrane protein, putative (TAIR:AT1G75220.1); Has 20407 Blast hits to 19945 proteins in 1330 species: Archae - 327; Bacteria - 8693; Metazoa - 4646; Fungi - 4186; Plants - 1403; Viruses - 2; Other Eukaryotes - 1150 (source: NCBI BLink).  protein_id AT1G19450.1p  transcript_id AT1G19450.1  protein_id AT1G19450.1p  transcript_id AT1G19450.1  
At1g19460	chr1:006738484	0.0	W/6738484-6739734	AT1G19460.1  CDS  gene_syn F18O14.24, F18O14_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT1G19470.1); Has 1036 Blast hits to 1001 proteins in 107 species: Archae - 4; Bacteria - 39; Metazoa - 366; Fungi - 4; Plants - 562; Viruses - 33; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT1G19460.1p  transcript_id AT1G19460.1  protein_id AT1G19460.1p  transcript_id AT1G19460.1  
At1g19464	chr1:006740500	0.0	W/6740500-6740591	AT1G19464.1  miRNA  gene_syn MICRORNA864A, MIR864A  gene MIR864A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCAGGUAUGAUUGACUUCAAA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR864A (MICRORNA864A); miRNA  transcript_id AT1G19464.1  
At1g19470	chr1:006741296	0.0	W/6741296-6742534	AT1G19470.1  CDS  gene_syn F18O14.42  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT1G19460.1); Has 1076 Blast hits to 1039 proteins in 105 species: Archae - 0; Bacteria - 43; Metazoa - 402; Fungi - 7; Plants - 565; Viruses - 33; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G19470.1p  transcript_id AT1G19470.1  protein_id AT1G19470.1p  transcript_id AT1G19470.1  
At1g19480	chr1:006744520	0.0	W/6744520-6745649,6746126-6746144	AT1G19480.1  CDS  gene_syn F18O14.25, F18O14_25  go_component chloroplast|GO:0009507||IEA  go_process DNA repair|GO:0006281||IEA  go_process base-excision repair|GO:0006284||IEA  go_function catalytic activity|GO:0003824||IEA  go_process base-excision repair|GO:0006284||ISS  product HhH-GPD base excision DNA repair family protein  note HhH-GPD base excision DNA repair family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: HhH-GPD base excision DNA repair family protein (TAIR:AT1G75230.1); Has 3475 Blast hits to 3475 proteins in 635 species: Archae - 37; Bacteria - 1340; Metazoa - 0; Fungi - 92; Plants - 45; Viruses - 0; Other Eukaryotes - 1961 (source: NCBI BLink).  protein_id AT1G19480.1p  transcript_id AT1G19480.1  protein_id AT1G19480.1p  transcript_id AT1G19480.1  
At1g19480	chr1:006744520	0.0	W/6744520-6745653	AT1G19480.2  CDS  gene_syn F18O14.25, F18O14_25  go_component chloroplast|GO:0009507||IEA  go_process DNA repair|GO:0006281||IEA  go_process base-excision repair|GO:0006284||IEA  go_function catalytic activity|GO:0003824||IEA  go_process base-excision repair|GO:0006284||ISS  product HhH-GPD base excision DNA repair family protein  note HhH-GPD base excision DNA repair family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: HhH-GPD base excision DNA repair family protein (TAIR:AT1G75230.2); Has 3475 Blast hits to 3475 proteins in 635 species: Archae - 37; Bacteria - 1340; Metazoa - 0; Fungi - 92; Plants - 45; Viruses - 0; Other Eukaryotes - 1961 (source: NCBI BLink).  protein_id AT1G19480.2p  transcript_id AT1G19480.2  protein_id AT1G19480.2p  transcript_id AT1G19480.2  
At1g19485	chr1:006747167	0.0	W/6747167-6747321,6747481-6747607,6747722-6747765,6748070-6748163,6748248-6749002,6749161-6749292,6749458-6749530,6749674-6749713,6749826-6749898,6749984-6750049,6750192-6750269,6750363-6750535,6750623-6750669,6750759-6750990,6751085-6751443	AT1G19485.1  CDS  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product AT hook motif-containing protein  note AT hook motif-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), AT hook, DNA-binding, conserved site (InterPro:IPR017956), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), HMG-I and HMG-Y, DNA-binding, conserved site (InterPro:IPR000637); Has 249 Blast hits to 232 proteins in 57 species: Archae - 0; Bacteria - 2; Metazoa - 123; Fungi - 45; Plants - 44; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT1G19485.1p  transcript_id AT1G19485.1  protein_id AT1G19485.1p  transcript_id AT1G19485.1  
At1g19490	chr1:006753678	0.0	C/6753678-6753959,6753271-6753450,6753103-6753180,6752931-6752996,6752782-6752847,6751953-6752696	AT1G19490.1  CDS  gene_syn F18O14.41  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  product bZIP transcription factor family protein  note bZIP transcription factor family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); Has 738 Blast hits to 723 proteins in 130 species: Archae - 2; Bacteria - 2; Metazoa - 172; Fungi - 61; Plants - 402; Viruses - 1; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT1G19490.1p  transcript_id AT1G19490.1  protein_id AT1G19490.1p  transcript_id AT1G19490.1  
At1g19500	chr1:006755316	0.0	C/6755316-6755536,6754952-6754973	AT1G19500.1  CDS  gene_syn F18O14.44  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35765.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19500.1p  transcript_id AT1G19500.1  protein_id AT1G19500.1p  transcript_id AT1G19500.1  
At1g19510	chr1:006757016	0.0	C/6757016-6757290,6756483-6756510	AT1G19510.1  CDS  gene_syn ARABIDOPSIS RAD-LIKE 5, ATRL5, F18O14.26, F18O14_26  gene ATRL5  go_function DNA binding|GO:0003677||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product ATRL5 (ARABIDOPSIS RAD-LIKE 5); DNA binding / transcription factor  note ARABIDOPSIS RAD-LIKE 5 (ATRL5); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: ATRL6 (ARABIDOPSIS RAD-LIKE 6); transcription factor (TAIR:AT1G75250.2); Has 396 Blast hits to 396 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 0; Plants - 267; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G19510.1p  transcript_id AT1G19510.1  protein_id AT1G19510.1p  transcript_id AT1G19510.1  
At1g19520	chr1:006760032	0.0	W/6760032-6761138,6761511-6762581	AT1G19520.1  CDS  gene_syn F18O14.40, NFD5, NUCLEAR FUSION DEFECTIVE 5  gene NFD5  product NFD5 (NUCLEAR FUSION DEFECTIVE 5)  note NUCLEAR FUSION DEFECTIVE 5 (NFD5); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G01970.1); Has 13897 Blast hits to 5066 proteins in 165 species: Archae - 3; Bacteria - 30; Metazoa - 232; Fungi - 129; Plants - 13123; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink).  protein_id AT1G19520.1p  transcript_id AT1G19520.1  protein_id AT1G19520.1p  transcript_id AT1G19520.1  
At1g19530	chr1:006763976	0.0	W/6763976-6764027,6764145-6764254,6764410-6764486,6764572-6764686	AT1G19530.1  CDS  gene_syn F18O14.29, F18O14_29  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, leaf apex, hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; Has 28 Blast hits to 28 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19530.1p  transcript_id AT1G19530.1  protein_id AT1G19530.1p  transcript_id AT1G19530.1  
At1g19540	chr1:006765713	0.0	W/6765713-6765889,6766212-6766352,6766445-6766688,6766775-6766978,6767081-6767247	AT1G19540.1  CDS  gene_syn F18O14.30, F18O14_30  go_process regulation of nitrogen utilization|GO:0006808||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function transcription repressor activity|GO:0016564||IEA  go_component cellular_component|GO:0005575||ND  product isoflavone reductase, putative  note isoflavone reductase, putative; FUNCTIONS IN: transcription repressor activity, binding, catalytic activity; INVOLVED IN: regulation of nitrogen utilization, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: isoflavone reductase, putative (TAIR:AT1G75280.1); Has 1273 Blast hits to 1271 proteins in 317 species: Archae - 2; Bacteria - 478; Metazoa - 4; Fungi - 289; Plants - 363; Viruses - 7; Other Eukaryotes - 130 (source: NCBI BLink).  protein_id AT1G19540.1p  transcript_id AT1G19540.1  protein_id AT1G19540.1p  transcript_id AT1G19540.1  
At1g19550	chr1:006767782	0.0	C/6767782-6767983,6767451-6767710	AT1G19550.1  CDS  gene_syn F18O14.31, F18O14_31  go_function glutathione dehydrogenase (ascorbate) activity|GO:0045174||ISS  product dehydroascorbate reductase, putative  note dehydroascorbate reductase, putative; FUNCTIONS IN: glutathione dehydrogenase (ascorbate) activity; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: DHAR1 (dehydroascorbate reductase); copper ion binding / glutathione dehydrogenase (ascorbate) (TAIR:AT1G19570.1); Has 318 Blast hits to 318 proteins in 95 species: Archae - 0; Bacteria - 40; Metazoa - 150; Fungi - 2; Plants - 117; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G19550.1p  transcript_id AT1G19550.1  protein_id AT1G19550.1p  transcript_id AT1G19550.1  
At1g19560	chr1:006768814	0.0	C/6768814-6770752	AT1G19560.1  pseudogenic_transcript  pseudo  gene_syn F18O14.32  note pseudogene, putative CHP-rich zinc finger protein  
At1g19570	chr1:006774356	0.0	C/6774356-6774413,6774141-6774231,6773462-6773954	AT1G19570.1  CDS  gene_syn DHAR1, F14P1.9, F14P1_9, dehydroascorbate reductase  gene DHAR1  function Encodes a member of the dehydroascorbate reductase gene family. Critical for a mutualistic symbiosis between the host Arabidopsis and the root colonizing fungus Piriformospora indica.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function copper ion binding|GO:0005507|16526091|IDA  go_component mitochondrion|GO:0005739|12954611|IDA  go_process response to symbiotic fungus|GO:0009610|19386380|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16262714|IEP  go_process response to ozone|GO:0010193|16262714|IEP  go_process regulation of symbiosis, encompassing mutualism through parasitism|GO:0043903|19386380|IMP  go_function glutathione dehydrogenase (ascorbate) activity|GO:0045174|12077129|IDA  go_function glutathione dehydrogenase (ascorbate) activity|GO:0045174||ISS  product DHAR1 (dehydroascorbate reductase); copper ion binding / glutathione dehydrogenase (ascorbate)  note dehydroascorbate reductase (DHAR1); FUNCTIONS IN: copper ion binding, glutathione dehydrogenase (ascorbate) activity; INVOLVED IN: response to jasmonic acid stimulus, response to ozone; LOCATED IN: in 6 components; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: DHAR2 (DEHYDROASCORBATE REDUCTASE 2); glutathione binding / glutathione dehydrogenase (ascorbate) (TAIR:AT1G75270.1); Has 3691 Blast hits to 3660 proteins in 734 species: Archae - 0; Bacteria - 1384; Metazoa - 907; Fungi - 112; Plants - 425; Viruses - 0; Other Eukaryotes - 863 (source: NCBI BLink).  protein_id AT1G19570.1p  transcript_id AT1G19570.1  protein_id AT1G19570.1p  transcript_id AT1G19570.1  
At1g19570	chr1:006774356	0.0	C/6774356-6774413,6774144-6774231,6773462-6773954	AT1G19570.2  CDS  gene_syn DHAR1, F14P1.9, F14P1_9, dehydroascorbate reductase  gene DHAR1  function Encodes a member of the dehydroascorbate reductase gene family. Critical for a mutualistic symbiosis between the host Arabidopsis and the root colonizing fungus Piriformospora indica.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_component mitochondrion|GO:0005739|12954611|IDA  go_process response to symbiotic fungus|GO:0009610|19386380|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16262714|IEP  go_process response to ozone|GO:0010193|16262714|IEP  go_process regulation of symbiosis, encompassing mutualism through parasitism|GO:0043903|19386380|IMP  go_function glutathione dehydrogenase (ascorbate) activity|GO:0045174|12077129|IDA  go_function glutathione dehydrogenase (ascorbate) activity|GO:0045174||ISS  product DHAR1 (dehydroascorbate reductase); glutathione dehydrogenase (ascorbate)  note dehydroascorbate reductase (DHAR1); FUNCTIONS IN: glutathione dehydrogenase (ascorbate) activity; INVOLVED IN: response to jasmonic acid stimulus, response to ozone; LOCATED IN: mitochondrion, apoplast, chloroplast, plasma membrane; EXPRESSED IN: guard cell, cultured cell, seed, leaf; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: DHAR2 (DEHYDROASCORBATE REDUCTASE 2); glutathione binding / glutathione dehydrogenase (ascorbate) (TAIR:AT1G75270.1); Has 3452 Blast hits to 3450 proteins in 697 species: Archae - 0; Bacteria - 1412; Metazoa - 832; Fungi - 105; Plants - 379; Viruses - 0; Other Eukaryotes - 724 (source: NCBI BLink).  protein_id AT1G19570.2p  transcript_id AT1G19570.2  protein_id AT1G19570.2p  transcript_id AT1G19570.2  
At1g19580	chr1:006774937	0.0	W/6774937-6775051,6775306-6775449,6776015-6776140,6776243-6776394,6776802-6777092	AT1G19580.1  CDS  gene_syn GAMMA CA1, GAMMA CARBONIC ANHYDRASE 1  gene GAMMA CA1  function Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.  go_component mitochondrion|GO:0005739|15821992|IDA  go_component mitochondrial membrane|GO:0031966|16407270|IDA  go_component respiratory chain complex I|GO:0045271|16407270|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process photorespiration|GO:0009853|16407270|TAS  go_function carbonate dehydratase activity|GO:0004089|16407270|ISS  product GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1); carbonate dehydratase  note GAMMA CARBONIC ANHYDRASE 1 (GAMMA CA1); FUNCTIONS IN: carbonate dehydratase activity; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, respiratory chain complex I; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), Bacterial transferase hexapeptide repeat (InterPro:IPR001451); BEST Arabidopsis thaliana protein match is: GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2); carbonate dehydratase (TAIR:AT1G47260.1); Has 6687 Blast hits to 6653 proteins in 1187 species: Archae - 172; Bacteria - 4019; Metazoa - 9; Fungi - 48; Plants - 109; Viruses - 0; Other Eukaryotes - 2330 (source: NCBI BLink).  protein_id AT1G19580.1p  transcript_id AT1G19580.1  protein_id AT1G19580.1p  transcript_id AT1G19580.1  
At1g19600	chr1:006779085	0.0	W/6779085-6779225,6779382-6779630,6779709-6779780,6779869-6779907,6780014-6780121,6780217-6780314,6780419-6780530,6780650-6780898	AT1G19600.1  CDS  gene_syn F14P1.7, F14P1_7  go_process D-ribose catabolic process|GO:0019303||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product pfkB-type carbohydrate kinase family protein  note pfkB-type carbohydrate kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: D-ribose catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611); BEST Arabidopsis thaliana protein match is: pfkB-type carbohydrate kinase family protein (TAIR:AT4G27600.1); Has 7782 Blast hits to 7781 proteins in 1176 species: Archae - 156; Bacteria - 3949; Metazoa - 275; Fungi - 74; Plants - 266; Viruses - 0; Other Eukaryotes - 3062 (source: NCBI BLink).  protein_id AT1G19600.1p  transcript_id AT1G19600.1  protein_id AT1G19600.1p  transcript_id AT1G19600.1  
At1g19610	chr1:006781961	0.0	C/6781961-6782024,6781674-6781846	AT1G19610.1  CDS  gene_syn F14P1.6, F14P1_6, LCR78, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 78, PDF1.4  gene PDF1.4  function Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952|18674922|ISS  go_process defense response|GO:0006952||ISS  go_function molecular_function|GO:0003674||ND  product PDF1.4  note PDF1.4; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: LCR67 (TAIR:AT1G75830.1); Has 101 Blast hits to 101 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G19610.1p  transcript_id AT1G19610.1  protein_id AT1G19610.1p  transcript_id AT1G19610.1  
At1g19620	chr1:006784020	0.0	W/6784020-6784153,6784256-6785075	AT1G19620.1  CDS  gene_syn F14P1.5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf lamina base, shoot apex, embryo, petiole, leaf; EXPRESSED DURING: C globular stage, LP.12 twelve leaves visible; Has 19 Blast hits to 7 proteins in 5 species: Archae - 0; Bacteria - 2; Metazoa - 12; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G19620.1p  transcript_id AT1G19620.1  protein_id AT1G19620.1p  transcript_id AT1G19620.1  
At1g19630	chr1:006787756	0.0	C/6787756-6787967,6787360-6787681,6787001-6787150,6786715-6786892,6786463-6786542,6786205-6786291,6786044-6786122,6785825-6785931,6785610-6785728,6785427-6785523	AT1G19630.1  CDS  gene_syn CYP722A1, F14P1.4, F14P1_4  gene CYP722A1  function member of CYP722A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP722A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP722A1; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: stem, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973); BEST Arabidopsis thaliana protein match is: CYP707A1; (+)-abscisic acid 8 -hydroxylase/ oxygen binding (TAIR:AT4G19230.1); Has 23969 Blast hits to 23925 proteins in 1317 species: Archae - 32; Bacteria - 3716; Metazoa - 9941; Fungi - 3639; Plants - 4975; Viruses - 3; Other Eukaryotes - 1663 (source: NCBI BLink).  protein_id AT1G19630.1p  transcript_id AT1G19630.1  protein_id AT1G19630.1p  transcript_id AT1G19630.1  
At1g19640	chr1:006791634	0.0	C/6791634-6791708,6791068-6791493,6790285-6790572,6789166-6789546	AT1G19640.1  CDS  gene_syn F14P1.3, F14P1_3, JASMONIC ACID CARBOXYL METHYLTRANSFERASE, JMT  gene JMT  function Encodes a S-adenosyl-L-methionine:jasmonic acid carboxyl methyltransferase that catalyzes the formation of methyljasmonate from jasmonic acid. Its expression is induced in response to wounding or methyljasmonate treatment.  go_component cytoplasm|GO:0005737|11287667|NAS  go_process response to wounding|GO:0009611|11287667|IEP  go_process jasmonic acid metabolic process|GO:0009694|11287667|IDA  go_process jasmonic acid biosynthetic process|GO:0009695|11287667|IDA  go_process jasmonic acid mediated signaling pathway|GO:0009867|11287667|IMP  go_function jasmonate O-methyltransferase activity|GO:0030795|11287667|IDA  go_function jasmonate O-methyltransferase activity|GO:0030795|11287667|IMP  product JMT (JASMONIC ACID CARBOXYL METHYLTRANSFERASE); jasmonate O-methyltransferase  note JASMONIC ACID CARBOXYL METHYLTRANSFERASE (JMT); FUNCTIONS IN: jasmonate O-methyltransferase activity; INVOLVED IN: jasmonic acid metabolic process, jasmonic acid biosynthetic process, response to wounding, jasmonic acid mediated signaling pathway; LOCATED IN: cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: BSMT1; S-adenosylmethionine-dependent methyltransferase (TAIR:AT3G11480.1); Has 591 Blast hits to 579 proteins in 98 species: Archae - 0; Bacteria - 48; Metazoa - 12; Fungi - 3; Plants - 456; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT1G19640.1p  transcript_id AT1G19640.1  protein_id AT1G19640.1p  transcript_id AT1G19640.1  
At1g19650	chr1:006798854	0.0	C/6798854-6799057,6798499-6798765,6798327-6798404,6798144-6798245,6798014-6798063,6797824-6797923,6797617-6797709,6797410-6797523,6797197-6797311,6796700-6797091,6796529-6796603,6796431-6796451	AT1G19650.2  CDS  gene_syn F14P1.2, F14P1_2  go_component plasma membrane|GO:0005886|17317660|IDA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||IEA  go_process transport|GO:0006810||ISS  go_function phosphatidylinositol transporter activity|GO:0008526||ISS  product SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative  note SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative; FUNCTIONS IN: phosphatidylinositol transporter activity, transporter activity; INVOLVED IN: transport; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putative (TAIR:AT1G75370.1); Has 1769 Blast hits to 1766 proteins in 174 species: Archae - 0; Bacteria - 0; Metazoa - 629; Fungi - 358; Plants - 463; Viruses - 0; Other Eukaryotes - 319 (source: NCBI BLink).  protein_id AT1G19650.2p  transcript_id AT1G19650.2  protein_id AT1G19650.2p  transcript_id AT1G19650.2  
At1g19650	chr1:006799504	0.0	C/6799504-6799537,6799099-6799384,6798854-6798953,6798499-6798765,6798327-6798404,6798144-6798245,6798014-6798063,6797824-6797923,6797617-6797709,6797410-6797523,6797197-6797311,6796700-6797091,6796529-6796603,6796431-6796451	AT1G19650.1  CDS  gene_syn F14P1.2, F14P1_2  go_component plasma membrane|GO:0005886|17317660|IDA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||IEA  go_process transport|GO:0006810||ISS  go_function phosphatidylinositol transporter activity|GO:0008526||ISS  product SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative  note SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative; FUNCTIONS IN: phosphatidylinositol transporter activity, transporter activity; INVOLVED IN: transport; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putative (TAIR:AT1G75370.1); Has 1786 Blast hits to 1782 proteins in 174 species: Archae - 0; Bacteria - 0; Metazoa - 645; Fungi - 360; Plants - 459; Viruses - 0; Other Eukaryotes - 322 (source: NCBI BLink).  protein_id AT1G19650.1p  transcript_id AT1G19650.1  protein_id AT1G19650.1p  transcript_id AT1G19650.1  
At1g19660	chr1:006801943	0.0	C/6801943-6802240,6801672-6801842,6801523-6801572,6801369-6801425,6801201-6801266,6800989-6801063,6800733-6800851,6800552-6800643,6800361-6800422	AT1G19660.1  CDS  gene_syn F14P1.1, F14P1_1  go_process response to wounding|GO:0009611||ISS  product wound-responsive family protein  note wound-responsive family protein; INVOLVED IN: response to wounding; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF151 (InterPro:IPR003729); BEST Arabidopsis thaliana protein match is: wound-responsive protein-related (TAIR:AT1G75380.3); Has 559 Blast hits to 559 proteins in 164 species: Archae - 30; Bacteria - 276; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).  protein_id AT1G19660.1p  transcript_id AT1G19660.1  protein_id AT1G19660.1p  transcript_id AT1G19660.1  
At1g19660	chr1:006801943	0.0	C/6801943-6802240,6801672-6801842,6801523-6801572,6801369-6801425,6801201-6801266,6800989-6801063,6800733-6800851,6800552-6800643,6800361-6800422	AT1G19660.2  CDS  gene_syn F14P1.1, F14P1_1  go_process response to wounding|GO:0009611||ISS  product wound-responsive family protein  note wound-responsive family protein; INVOLVED IN: response to wounding; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF151 (InterPro:IPR003729); BEST Arabidopsis thaliana protein match is: wound-responsive protein-related (TAIR:AT1G75380.3); Has 559 Blast hits to 559 proteins in 164 species: Archae - 30; Bacteria - 276; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).  protein_id AT1G19660.2p  transcript_id AT1G19660.2  protein_id AT1G19660.2p  transcript_id AT1G19660.2  
At1g19670	chr1:006804654	0.0	C/6804654-6804923,6803796-6804500	AT1G19670.1  CDS  gene_syn ARABIDOPSIS THALIANA CORONATINE-INDUCED PROTEIN 1, ATCLH1, ATHCOR1, CHLOROPHYLLASE, CORI1, CORONATINE-INDUCED PROTEIN 1, F6F9.28, F6F9_28  gene ATCLH1  function Chlorophyllase is the first enzyme involved in chlorophyll degradation. It catalyzes the hydrolysis of the ester bond to yield chlorophyllide and phytol. AtCLH1 lacks a typical signal sequence for the chloroplast. Its expression is induced rapidly by methyljasmonate, a known promoter of senescence and chlorophyll degradation.  go_component vacuole|GO:0005773|15539469|IDA  go_process response to stress|GO:0006950|15598807|IMP  go_process response to jasmonic acid stimulus|GO:0009753|10611389|IEP  go_process jasmonic acid mediated signaling pathway|GO:0009867|9501136|IGI  go_process chlorophyll catabolic process|GO:0015996|10611389|IDA  go_function chlorophyllase activity|GO:0047746|10611389|IDA  product ATCLH1 (ARABIDOPSIS THALIANA CORONATINE-INDUCED PROTEIN 1); chlorophyllase  note ARABIDOPSIS THALIANA CORONATINE-INDUCED PROTEIN 1 (ATCLH1); FUNCTIONS IN: chlorophyllase activity; INVOLVED IN: response to jasmonic acid stimulus, chlorophyll catabolic process, jasmonic acid mediated signaling pathway, response to stress; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyllase (InterPro:IPR010821), Chlorophyllase, chloroplast (InterPro:IPR017395); BEST Arabidopsis thaliana protein match is: ATCLH2; chlorophyllase (TAIR:AT5G43860.1); Has 125 Blast hits to 125 proteins in 45 species: Archae - 0; Bacteria - 45; Metazoa - 12; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G19670.1p  transcript_id AT1G19670.1  protein_id AT1G19670.1p  transcript_id AT1G19670.1  
At1g19680	chr1:006805909	0.0	W/6805909-6806239,6806506-6806537,6806619-6807569,6807662-6807682	AT1G19680.1  CDS  gene_syn F14P1.21, F14P1_21  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G75400.1); Has 366 Blast hits to 222 proteins in 62 species: Archae - 0; Bacteria - 44; Metazoa - 75; Fungi - 22; Plants - 84; Viruses - 0; Other Eukaryotes - 141 (source: NCBI BLink).  protein_id AT1G19680.1p  transcript_id AT1G19680.1  protein_id AT1G19680.1p  transcript_id AT1G19680.1  
At1g19690	chr1:006809336	0.0	C/6809336-6809562,6809158-6809250,6808999-6809077,6808832-6808910,6808702-6808741,6808498-6808632,6808278-6808415,6807925-6808192	AT1G19690.1  CDS  gene_syn F14P1.35, F14P1_35  go_component chloroplast|GO:0009507|18431481|IDA  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  product binding / catalytic/ coenzyme binding  note binding / catalytic/ coenzyme binding; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: cellular metabolic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); Has 2514 Blast hits to 2514 proteins in 644 species: Archae - 32; Bacteria - 1377; Metazoa - 4; Fungi - 4; Plants - 44; Viruses - 2; Other Eukaryotes - 1051 (source: NCBI BLink).  protein_id AT1G19690.1p  transcript_id AT1G19690.1  protein_id AT1G19690.1p  transcript_id AT1G19690.1  
At1g19700	chr1:006811111	0.0	C/6811111-6811854,6810637-6811022,6810471-6810531,6809958-6810383	AT1G19700.1  CDS  gene_syn BEL1-LIKE HOMEODOMAIN 10, BEL10, BLH10, F14P1.20, F14P1_20  gene BEL10  function Encodes a member of the BEL family of homeodomain proteins. Its interaction with PLP (PAS/LOV PROTEIN) is diminished by blue light.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product BEL10 (BEL1-LIKE HOMEODOMAIN 10); DNA binding / transcription factor  note BEL1-LIKE HOMEODOMAIN 10 (BEL10); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BLH3 (BEL1-LIKE HOMEODOMAIN 3); DNA binding / transcription factor (TAIR:AT1G75410.2); Has 4218 Blast hits to 4218 proteins in 272 species: Archae - 0; Bacteria - 4; Metazoa - 1804; Fungi - 208; Plants - 2032; Viruses - 0; Other Eukaryotes - 170 (source: NCBI BLink).  protein_id AT1G19700.1p  transcript_id AT1G19700.1  protein_id AT1G19700.1p  transcript_id AT1G19700.1  
At1g19700	chr1:006811111	0.0	C/6811111-6811854,6810637-6811022,6810471-6810531,6809958-6810383	AT1G19700.2  CDS  gene_syn BEL1-LIKE HOMEODOMAIN 10, BEL10, BLH10, F14P1.20, F14P1_20  gene BEL10  function Encodes a member of the BEL family of homeodomain proteins. Its interaction with PLP (PAS/LOV PROTEIN) is diminished by blue light.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product BEL10 (BEL1-LIKE HOMEODOMAIN 10); DNA binding / transcription factor  note BEL1-LIKE HOMEODOMAIN 10 (BEL10); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BLH3 (BEL1-LIKE HOMEODOMAIN 3); DNA binding / transcription factor (TAIR:AT1G75410.2).  protein_id AT1G19700.2p  transcript_id AT1G19700.2  protein_id AT1G19700.2p  transcript_id AT1G19700.2  
At1g19710	chr1:006814920	0.0	W/6814920-6815187,6815257-6815399,6815484-6815755,6815848-6816002,6816115-6816716	AT1G19710.1  CDS  gene_syn F14P1.19, F14P1_19  go_process biosynthetic process|GO:0009058||IEA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyl transferase family 1 protein  note glycosyl transferase family 1 protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: Golgi apparatus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: glycosyl transferase family 1 protein (TAIR:AT1G75420.1); Has 4243 Blast hits to 4240 proteins in 780 species: Archae - 115; Bacteria - 2336; Metazoa - 83; Fungi - 27; Plants - 65; Viruses - 0; Other Eukaryotes - 1617 (source: NCBI BLink).  protein_id AT1G19710.1p  transcript_id AT1G19710.1  protein_id AT1G19710.1p  transcript_id AT1G19710.1  
At1g19715	chr1:006819110	0.0	C/6819110-6819244,6818582-6819028,6818250-6818483,6817795-6818169,6817324-6817548,6816934-6817233	AT1G19715.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product jacalin lectin family protein  note jacalin lectin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin lectin family protein (TAIR:AT1G73040.1); Has 2230 Blast hits to 629 proteins in 48 species: Archae - 0; Bacteria - 8; Metazoa - 73; Fungi - 0; Plants - 2140; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G19715.2p  transcript_id AT1G19715.2  protein_id AT1G19715.2p  transcript_id AT1G19715.2  
At1g19715	chr1:006819430	0.0	C/6819430-6819432,6819110-6819313,6818582-6819028,6818250-6818483,6817795-6818169,6817324-6817548,6816934-6817233	AT1G19715.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product jacalin lectin family protein  note jacalin lectin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin lectin family protein (TAIR:AT1G73040.1); Has 2262 Blast hits to 629 proteins in 48 species: Archae - 0; Bacteria - 8; Metazoa - 74; Fungi - 0; Plants - 2171; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G19715.1p  transcript_id AT1G19715.1  protein_id AT1G19715.1p  transcript_id AT1G19715.1  
At1g19720	chr1:006819926	0.0	C/6819926-6822610	AT1G19720.1  CDS  gene_syn F14P1.33, F14P1_33  go_component chloroplast|GO:0009507|18431481|IDA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, chloroplast, cytoplasm; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G57430.1); Has 22413 Blast hits to 5958 proteins in 201 species: Archae - 3; Bacteria - 14; Metazoa - 387; Fungi - 330; Plants - 20974; Viruses - 0; Other Eukaryotes - 705 (source: NCBI BLink).  protein_id AT1G19720.1p  transcript_id AT1G19720.1  protein_id AT1G19720.1p  transcript_id AT1G19720.1  
At1g19730	chr1:006823931	0.0	C/6823931-6824020,6823407-6823532,6823163-6823306	AT1G19730.1  CDS  gene_syn ATH4, ATTRX4, F14P1.32, F14P1_32, THIOREDOXIN, thioredoxin H-type 4  gene ATTRX4  function encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells.  go_process cell redox homeostasis|GO:0045454||IEA  go_component cytosol|GO:0005829|7777559|TAS  go_function oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor|GO:0016671|7777559|IDA  product ATTRX4; oxidoreductase, acting on sulfur group of donors, disulfide as acceptor  note ATTRX4; FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: cell redox homeostasis; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336), Thioredoxin, conserved site (InterPro:IPR017937); BEST Arabidopsis thaliana protein match is: ATTRX5; oxidoreductase, acting on sulfur group of donors, disulfide as acceptor (TAIR:AT1G45145.1); Has 12842 Blast hits to 12580 proteins in 1712 species: Archae - 177; Bacteria - 5764; Metazoa - 1633; Fungi - 660; Plants - 1123; Viruses - 3; Other Eukaryotes - 3482 (source: NCBI BLink).  protein_id AT1G19730.1p  transcript_id AT1G19730.1  protein_id AT1G19730.1p  transcript_id AT1G19730.1  
At1g19740	chr1:006824396	0.0	W/6824396-6825232	AT1G19740.1  CDS  gene_syn F14P1.10, F14P1_10  go_component chloroplast|GO:0009507|18431481|IDA  go_process ATP-dependent proteolysis|GO:0006510||IEA  go_function ATP-dependent peptidase activity|GO:0004176||IEA  go_function ATP-dependent peptidase activity|GO:0004176||ISS  product ATP-dependent protease La (LON) domain-containing protein  note ATP-dependent protease La (LON) domain-containing protein; FUNCTIONS IN: ATP-dependent peptidase activity; INVOLVED IN: ATP-dependent proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, lon N-terminal (InterPro:IPR003111); BEST Arabidopsis thaliana protein match is: ATP-dependent protease La (LON) domain-containing protein (TAIR:AT1G75460.1); Has 2910 Blast hits to 2910 proteins in 574 species: Archae - 0; Bacteria - 1078; Metazoa - 141; Fungi - 27; Plants - 64; Viruses - 0; Other Eukaryotes - 1600 (source: NCBI BLink).  protein_id AT1G19740.1p  transcript_id AT1G19740.1  protein_id AT1G19740.1p  transcript_id AT1G19740.1  
At1g19750	chr1:006826997	0.0	W/6826997-6827146,6827317-6827577,6827666-6827825,6828006-6828187,6828917-6829154,6829406-6829560,6829649-6829738,6829847-6829918,6830017-6830061	AT1G19750.1  CDS  gene_syn F14P1.15, F14P1_15  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT1G27840.1); Has 18098 Blast hits to 11475 proteins in 430 species: Archae - 16; Bacteria - 2711; Metazoa - 7460; Fungi - 3900; Plants - 1649; Viruses - 0; Other Eukaryotes - 2362 (source: NCBI BLink).  protein_id AT1G19750.1p  transcript_id AT1G19750.1  protein_id AT1G19750.1p  transcript_id AT1G19750.1  
At1g19770	chr1:006832426	0.0	W/6832426-6832468,6832564-6833702	AT1G19770.1  CDS  gene_syn ATPUP14, F14P1.13, F14P1_13  gene ATPUP14  function Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.  go_component membrane|GO:0016020|10662864|TAS  go_process purine transport|GO:0006863|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345||ISS  product ATPUP14; purine transmembrane transporter  note ATPUP14; FUNCTIONS IN: purine transmembrane transporter activity; INVOLVED IN: purine transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: ATPUP15; purine transmembrane transporter (TAIR:AT1G75470.1); Has 199 Blast hits to 193 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 190; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G19770.1p  transcript_id AT1G19770.1  protein_id AT1G19770.1p  transcript_id AT1G19770.1  
At1g19780	chr1:006836532	0.0	C/6836532-6836578,6835842-6836433,6835547-6835759,6835137-6835450,6834711-6835059,6833885-6834631	AT1G19780.1  CDS  gene_syn ATCNGC8, CNGC8, CYCLIC NUCLEOTIDE GATED CHANNEL 8, F14P1.12, F14P1_12  gene ATCNGC8  function member of Cyclic nucleotide gated channel family  go_component membrane|GO:0016020||IEA  go_process ion transport|GO:0006811||IEA  go_function ion channel activity|GO:0005216||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function cyclic nucleotide binding|GO:0030551||ISS  product ATCNGC8 (CYCLIC NUCLEOTIDE GATED CHANNEL 8); calmodulin binding / cyclic nucleotide binding / ion channel  note CYCLIC NUCLEOTIDE GATED CHANNEL 8 (ATCNGC8); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport; LOCATED IN: membrane; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding, conserved site (InterPro:IPR018488), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: ATCNGC7 (CYCLIC NUCLEOTIDE GATED CHANNEL 7); calmodulin binding / cyclic nucleotide binding / ion channel (TAIR:AT1G15990.1); Has 2840 Blast hits to 2729 proteins in 233 species: Archae - 0; Bacteria - 56; Metazoa - 1297; Fungi - 51; Plants - 657; Viruses - 0; Other Eukaryotes - 779 (source: NCBI BLink).  protein_id AT1G19780.1p  transcript_id AT1G19780.1  protein_id AT1G19780.1p  transcript_id AT1G19780.1  
At1g19790	chr1:006839183	0.0	C/6839183-6839831,6838400-6838788	AT1G19790.1  CDS  gene_syn F14P1.22, F14P1_22, SHI-RELATED SEQUENCE 7, SRS7  gene SRS7  function A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SRS7 (SHI-RELATED SEQUENCE 7)  note SHI-RELATED SEQUENCE 7 (SRS7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SRS5 (SHI-RELATED SEQUENCE 5) (TAIR:AT1G75520.1); Has 90 Blast hits to 90 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19790.1p  transcript_id AT1G19790.1  protein_id AT1G19790.1p  transcript_id AT1G19790.1  
At1g19790	chr1:006839183	0.0	C/6839183-6839831,6838400-6838788	AT1G19790.2  CDS  gene_syn F14P1.22, F14P1_22, SHI-RELATED SEQUENCE 7, SRS7  gene SRS7  function A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SRS7 (SHI-RELATED SEQUENCE 7)  note SHI-RELATED SEQUENCE 7 (SRS7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SRS5 (SHI-RELATED SEQUENCE 5) (TAIR:AT1G75520.1); Has 90 Blast hits to 90 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19790.2p  transcript_id AT1G19790.2  protein_id AT1G19790.2p  transcript_id AT1G19790.2  
At1g19800	chr1:006846812	0.0	W/6846812-6846858,6846949-6847954	AT1G19800.1  CDS  gene_syn F14P1.27, F14P1_27, TGD1, TRIGALACTOSYLDIACYLGLYCEROL 1  gene TGD1  function Encodes a permease-Like protein involved in lipid transfer from the ER to the chloroplast, more specifically, transfer of phosphatidate across the chloroplast inner membrane. Mutant leaves accumulate trigalactosyldiacylglycerol, triacylglycerol and phosphatidate. Chloroplast lipids are altered in their fatty acid composition and as a consequence the development of chloroplasts in the mutants are impacted. The mutant seeds has a higher abortion rate.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast inner membrane|GO:0009706|16199613|TAS  go_component chloroplast outer membrane|GO:0009707|12743031|IDA  go_component chloroplast envelope|GO:0009941|16199613|IDA  go_process lipid transport|GO:0006869|12743031|IMP  go_function lipid transporter activity|GO:0005319|12743031|IMP  product TGD1 (TRIGALACTOSYLDIACYLGLYCEROL 1); lipid transporter  note TRIGALACTOSYLDIACYLGLYCEROL 1 (TGD1); FUNCTIONS IN: lipid transporter activity; INVOLVED IN: lipid transport; LOCATED IN: chloroplast outer membrane, chloroplast, chloroplast envelope, chloroplast inner membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF140 (InterPro:IPR003453); Has 3422 Blast hits to 3422 proteins in 847 species: Archae - 0; Bacteria - 2640; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 756 (source: NCBI BLink).  protein_id AT1G19800.1p  transcript_id AT1G19800.1  protein_id AT1G19800.1p  transcript_id AT1G19800.1  
At1g19800	chr1:006846812	0.0	W/6846812-6846858,6846949-6847954	AT1G19800.2  CDS  gene_syn F14P1.27, F14P1_27, TGD1, TRIGALACTOSYLDIACYLGLYCEROL 1  gene TGD1  function Encodes a permease-Like protein involved in lipid transfer from the ER to the chloroplast, more specifically, transfer of phosphatidate across the chloroplast inner membrane. Mutant leaves accumulate trigalactosyldiacylglycerol, triacylglycerol and phosphatidate. Chloroplast lipids are altered in their fatty acid composition and as a consequence the development of chloroplasts in the mutants are impacted. The mutant seeds has a higher abortion rate.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast inner membrane|GO:0009706|16199613|TAS  go_component chloroplast outer membrane|GO:0009707|12743031|IDA  go_component chloroplast envelope|GO:0009941|16199613|IDA  go_process lipid transport|GO:0006869|12743031|IMP  go_function lipid transporter activity|GO:0005319|12743031|IMP  product TGD1 (TRIGALACTOSYLDIACYLGLYCEROL 1); lipid transporter  note TRIGALACTOSYLDIACYLGLYCEROL 1 (TGD1); FUNCTIONS IN: lipid transporter activity; INVOLVED IN: lipid transport; LOCATED IN: chloroplast outer membrane, chloroplast, chloroplast envelope, chloroplast inner membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF140 (InterPro:IPR003453); Has 3422 Blast hits to 3422 proteins in 847 species: Archae - 0; Bacteria - 2640; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 756 (source: NCBI BLink).  protein_id AT1G19800.2p  transcript_id AT1G19800.2  protein_id AT1G19800.2p  transcript_id AT1G19800.2  
At1g19800	chr1:006846812	0.0	W/6846812-6846858,6846949-6847954	AT1G19800.3  CDS  gene_syn F14P1.27, F14P1_27, TGD1, TRIGALACTOSYLDIACYLGLYCEROL 1  gene TGD1  function Encodes a permease-Like protein involved in lipid transfer from the ER to the chloroplast, more specifically, transfer of phosphatidate across the chloroplast inner membrane. Mutant leaves accumulate trigalactosyldiacylglycerol, triacylglycerol and phosphatidate. Chloroplast lipids are altered in their fatty acid composition and as a consequence the development of chloroplasts in the mutants are impacted. The mutant seeds has a higher abortion rate.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast inner membrane|GO:0009706|16199613|TAS  go_component chloroplast outer membrane|GO:0009707|12743031|IDA  go_component chloroplast envelope|GO:0009941|16199613|IDA  go_process lipid transport|GO:0006869|12743031|IMP  go_function lipid transporter activity|GO:0005319|12743031|IMP  product TGD1 (TRIGALACTOSYLDIACYLGLYCEROL 1); lipid transporter  note TRIGALACTOSYLDIACYLGLYCEROL 1 (TGD1); FUNCTIONS IN: lipid transporter activity; INVOLVED IN: lipid transport; LOCATED IN: chloroplast outer membrane, chloroplast, chloroplast envelope, chloroplast inner membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF140 (InterPro:IPR003453); Has 3422 Blast hits to 3422 proteins in 847 species: Archae - 0; Bacteria - 2640; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 756 (source: NCBI BLink).  protein_id AT1G19800.3p  transcript_id AT1G19800.3  protein_id AT1G19800.3p  transcript_id AT1G19800.3  
At1g19810	chr1:006848382	0.0	C/6848382-6849988	AT1G19810.1  pseudogenic_transcript  pseudo  gene_syn F14P1.17  note pseudogene, putative cell division control protein, blastp match of 53% identity and 2.2e-113 P-value to GP|6069665|dbj|BAA85441.1||AP000616 EST D15969(C1695) corresponds to a region of the predicted gene.~similar to valosin-containing protein (U20213) {Oryza sativa (japonica cultivar-group)}  
At1g19830	chr1:006852230	0.0	W/6852230-6852583	AT1G19830.1  CDS  gene_syn F14P1.18, F14P1_18  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive protein, putative  note auxin-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT1G75580.1); Has 651 Blast hits to 640 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 650; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G19830.1p  transcript_id AT1G19830.1  protein_id AT1G19830.1p  transcript_id AT1G19830.1  
At1g19835	chr1:006859439	0.0	C/6859439-6859513,6859119-6859338,6856803-6859041,6856663-6856720,6856212-6856568	AT1G19835.1  CDS  gene_syn F14P1.24, F14P1_24  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869, plant (InterPro:IPR008587); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47900.1); Has 44906 Blast hits to 23790 proteins in 1265 species: Archae - 546; Bacteria - 4089; Metazoa - 24989; Fungi - 3566; Plants - 1950; Viruses - 103; Other Eukaryotes - 9663 (source: NCBI BLink).  protein_id AT1G19835.1p  transcript_id AT1G19835.1  protein_id AT1G19835.1p  transcript_id AT1G19835.1  
At1g19840	chr1:006872794	0.0	C/6872794-6873255	AT1G19840.1  CDS  gene_syn F6F9.11, F6F9_11  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; EXPRESSED IN: trichome; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT1G75590.1); Has 713 Blast hits to 704 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 712; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G19840.1p  transcript_id AT1G19840.1  protein_id AT1G19840.1p  transcript_id AT1G19840.1  
At1g19850	chr1:006887353	0.0	W/6887353-6887485,6887636-6887751,6887860-6887958,6888049-6888105,6888194-6888349,6888429-6888513,6888590-6888680,6888777-6888941,6889024-6889146,6889232-6889443,6889523-6890676,6890769-6890959,6891056-6891182	AT1G19850.1  CDS  gene_syn ARF5, AUXIN RESPONSE FACTOR 5, F6F9.10, F6F9_10, IAA24, INDOLEACETIC ACID 24, MONOPTEROS, MP, TRANSCRIPTION FACTOR IAA24  gene MP  function Encodes a transcription factor (IAA24) mediating embryo axis formation and vascular development. Similar to AUXIN RESPONSIVE FACTOR 1 (ARF1) shown to bind to auxin responsive elements (AREs), and to the maize transcriptional activator VIVIPAROUS 1( VP1). In situ hybridization shows expression in provascular tissue of embryos, the emerging shoot primordia, then is restricted to provascular tissue, and in the root central vascular cylinder.  go_component membrane|GO:0016020|17432890|IDA  go_component nucleus|GO:0005634|9482737|ISS  go_process response to auxin stimulus|GO:0009733|11283339|IEP  go_process embryonic development|GO:0009790|17553903|IGI  go_process flower development|GO:0009908|17553903|IGI  go_process longitudinal axis specification|GO:0009942|8904808|IMP  go_process xylem and phloem pattern formation|GO:0010051|8904808|IMP  go_process leaf vascular tissue pattern formation|GO:0010305|17553903|IGI  go_process root development|GO:0048364|17553903|IGI  go_process meristem development|GO:0048507|17553903|IGI  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9482737|ISS  go_function transcription factor activity|GO:0003700|9482737|TAS  go_function promoter binding|GO:0010843|19369397|IDA  product MP (MONOPTEROS); transcription factor  note MONOPTEROS (MP); FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 8 processes; LOCATED IN: nucleus, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: ARF6 (AUXIN RESPONSE FACTOR 6); transcription factor (TAIR:AT1G30330.2); Has 1438 Blast hits to 1230 proteins in 61 species: Archae - 0; Bacteria - 11; Metazoa - 7; Fungi - 2; Plants - 1406; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G19850.1p  transcript_id AT1G19850.1  protein_id AT1G19850.1p  transcript_id AT1G19850.1  
At1g19860	chr1:006894347	0.0	C/6894347-6894400,6893039-6893236,6892616-6892740,6891654-6892518	AT1G19860.1  CDS  gene_syn F6F9.9, F6F9_9  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc finger (CCCH-type) family protein  note zinc finger (CCCH-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein (TAIR:AT3G51180.1); Has 137 Blast hits to 123 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 6; Plants - 102; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G19860.1p  transcript_id AT1G19860.1  protein_id AT1G19860.1p  transcript_id AT1G19860.1  
At1g19870	chr1:006898447	0.0	C/6898447-6898539,6897544-6898137,6897206-6897385,6897065-6897124,6895513-6896950,6895400-6895419	AT1G19870.1  CDS  gene_syn F6F9.8, F6F9_8, IQ-domain 32, iqd32  gene iqd32  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product iqd32 (IQ-domain 32); calmodulin binding  note IQ-domain 32 (iqd32); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus, plasma membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQD31 (IQ-domain 31); calmodulin binding (TAIR:AT1G74690.1); Has 7574 Blast hits to 5259 proteins in 449 species: Archae - 14; Bacteria - 667; Metazoa - 3528; Fungi - 829; Plants - 616; Viruses - 32; Other Eukaryotes - 1888 (source: NCBI BLink).  protein_id AT1G19870.1p  transcript_id AT1G19870.1  protein_id AT1G19870.1p  transcript_id AT1G19870.1  
At1g19880	chr1:006903623	0.0	C/6903623-6903818,6903473-6903534,6903313-6903380,6903085-6903206,6902892-6903015,6902728-6902779,6902323-6902440,6902198-6902228,6902080-6902103,6901874-6901998,6901700-6901781,6901496-6901618,6901362-6901415,6901209-6901278,6901055-6901088,6900648-6900979	AT1G19880.1  CDS  gene_syn F6F9.7, F6F9_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function Ran GTPase binding|GO:0008536||ISS  product regulator of chromosome condensation (RCC1) family protein  note regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: Ran GTPase binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: UVR8 (UVB-RESISTANCE 8); chromatin binding / guanyl-nucleotide exchange factor (TAIR:AT5G63860.1); Has 13465 Blast hits to 4777 proteins in 336 species: Archae - 54; Bacteria - 1500; Metazoa - 5495; Fungi - 742; Plants - 1322; Viruses - 16; Other Eukaryotes - 4336 (source: NCBI BLink).  protein_id AT1G19880.1p  transcript_id AT1G19880.1  protein_id AT1G19880.1p  transcript_id AT1G19880.1  
At1g19890	chr1:006905034	0.0	W/6905034-6905105,6905220-6905299,6905398-6905488,6905622-6905792	AT1G19890.1  CDS  gene_syn ATMGH3, F6F9.5, F6F9_5, MALE-GAMETE-SPECIFIC HISTONE H3, MGH3  gene MGH3  function histone 3.3, male-gamete-specific expression  go_function DNA binding|GO:0003677||IEA  go_component nucleus|GO:0005634|17555967|IEP  go_component generative cell nucleus|GO:0048555|17555967|IEP  go_process double fertilization forming a zygote and endosperm|GO:0009567|17555967|IEP  go_function DNA binding|GO:0003677||ISS  product MGH3 (MALE-GAMETE-SPECIFIC HISTONE H3); DNA binding  note MALE-GAMETE-SPECIFIC HISTONE H3 (MGH3); FUNCTIONS IN: DNA binding; INVOLVED IN: double fertilization forming a zygote and endosperm; LOCATED IN: generative cell nucleus, nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, K second mitotic division stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H3 (TAIR:AT5G10980.1); Has 10205 Blast hits to 10202 proteins in 5280 species: Archae - 0; Bacteria - 0; Metazoa - 7336; Fungi - 1302; Plants - 999; Viruses - 0; Other Eukaryotes - 568 (source: NCBI BLink).  protein_id AT1G19890.1p  transcript_id AT1G19890.1  protein_id AT1G19890.1p  transcript_id AT1G19890.1  
At1g19900	chr1:006907038	0.0	C/6907038-6908684	AT1G19900.1  CDS  gene_syn F6F9.4, F6F9_4  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glyoxal oxidase-related  note glyoxal oxidase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Galactose oxidase, beta-propeller (InterPro:IPR015916), Immunoglobulin E-set (InterPro:IPR014756), Glyoxal oxidase, N-terminal (InterPro:IPR009880), Region of unknown function DUF1929 (InterPro:IPR015202); BEST Arabidopsis thaliana protein match is: glyoxal oxidase-related (TAIR:AT1G75620.1); Has 559 Blast hits to 558 proteins in 112 species: Archae - 0; Bacteria - 222; Metazoa - 0; Fungi - 169; Plants - 151; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G19900.1p  transcript_id AT1G19900.1  protein_id AT1G19900.1p  transcript_id AT1G19900.1  
At1g19910	chr1:006913317	0.0	W/6913317-6913395,6913501-6913786,6914190-6914322	AT1G19910.1  CDS  gene_syn ATVHA-C2, AVA-2PE, AVA-P2, F6F9.3, F6F9_3, VACUOLAR H+-PUMPING ATPASE 16 KDA PROTEOLIPID, VACUOLAR-TYPE H+ ATPASE C2  gene AVA-P2  function vacuolar H+-pumping ATPase 16 kDa proteolipid (ava-p2)  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_component vacuolar proton-transporting V-type ATPase, V0 domain|GO:0000220|7579175|ISS  go_function ATPase activity|GO:0016887||ISS  go_function proton-transporting ATPase activity, rotational mechanism|GO:0046961|7579175|TAS  product AVA-P2; ATPase/ proton-transporting ATPase, rotational mechanism  note AVA-P2; FUNCTIONS IN: ATPase activity, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: vacuolar proton-transporting V-type ATPase, V0 domain, plasma membrane, vacuole; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: ATPase, F0/V0 complex, subunit C (InterPro:IPR002379), ATPase, V0 complex, proteolipid subunit C, eukaryotic (InterPro:IPR011555), ATPase, V0 complex, proteolipid subunit C (InterPro:IPR000245); BEST Arabidopsis thaliana protein match is: ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3); ATPase (TAIR:AT4G38920.1); Has 1813 Blast hits to 1633 proteins in 398 species: Archae - 127; Bacteria - 309; Metazoa - 519; Fungi - 314; Plants - 224; Viruses - 0; Other Eukaryotes - 320 (source: NCBI BLink).  protein_id AT1G19910.1p  transcript_id AT1G19910.1  protein_id AT1G19910.1p  transcript_id AT1G19910.1  
At1g19920	chr1:006916116	0.0	C/6916116-6916657,6915625-6916030,6915273-6915533,6915083-6915169,6914835-6914969	AT1G19920.1  CDS  gene_syn APS2, ASA1, ATP SULFURYLASE ARABIDOPSIS 1, ATP SULFURYLASE PRECURSOR, F6F9.2, F6F9_2  gene APS2  function encodes a chloroplast form of ATP sulfurylase  go_component chloroplast|GO:0009507|10806350|NAS  go_process sulfate assimilation|GO:0000103|7487067|TAS  go_process sulfate assimilation|GO:0000103|8647819|TAS  go_function sulfate adenylyltransferase (ATP) activity|GO:0004781|8647819|IMP  product APS2; sulfate adenylyltransferase (ATP)  note APS2; FUNCTIONS IN: sulfate adenylyltransferase (ATP) activity; INVOLVED IN: sulfate assimilation; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), PUA-like (InterPro:IPR015947), ATP-sulfurylase (InterPro:IPR002650); BEST Arabidopsis thaliana protein match is: APS1 (ATP SULFURYLASE 1); sulfate adenylyltransferase (ATP) (TAIR:AT3G22890.1); Has 1564 Blast hits to 1562 proteins in 426 species: Archae - 54; Bacteria - 515; Metazoa - 216; Fungi - 151; Plants - 136; Viruses - 0; Other Eukaryotes - 492 (source: NCBI BLink).  protein_id AT1G19920.1p  transcript_id AT1G19920.1  protein_id AT1G19920.1p  transcript_id AT1G19920.1  
At1g19930	chr1:006917020	0.0	W/6917020-6917545,6917630-6918138	AT1G19930.1  CDS  gene_syn F6F9.32, F6F9_32  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT1G60570.1); Has 810 Blast hits to 788 proteins in 71 species: Archae - 2; Bacteria - 26; Metazoa - 190; Fungi - 0; Plants - 574; Viruses - 6; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G19930.1p  transcript_id AT1G19930.1  protein_id AT1G19930.1p  transcript_id AT1G19930.1  
At1g19940	chr1:006920076	0.0	C/6920076-6920268,6919721-6920004,6919214-6919648,6918989-6919127,6918742-6918908,6918323-6918652	AT1G19940.1  CDS  gene_syn Arabidopsis thaliana Glycosyl Hydrolase 9B5, AtGH9B5, F6F9.1, F6F9_1  gene AtGH9B5  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product AtGH9B5 (Arabidopsis thaliana Glycosyl Hydrolase 9B5); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds  note Arabidopsis thaliana Glycosyl Hydrolase 9B5 (AtGH9B5); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: AtGH9B7 (Arabidopsis thaliana glycosyl hydrolase 9B7); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G75680.1); Has 1148 Blast hits to 1144 proteins in 192 species: Archae - 0; Bacteria - 355; Metazoa - 133; Fungi - 14; Plants - 617; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G19940.1p  transcript_id AT1G19940.1  protein_id AT1G19940.1p  transcript_id AT1G19940.1  
At1g19950	chr1:006925043	0.0	W/6925043-6925074,6925165-6925263,6925361-6925417,6925507-6925570,6925676-6925882,6926039-6926527	AT1G19950.1  CDS  gene_syn HVA22-LIKE PROTEIN H (ATHVA22H), HVA22H, T20H2.26, T20H2_26  gene HVA22H  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product HVA22H (HVA22-LIKE PROTEIN H (ATHVA22H))  note HVA22-LIKE PROTEIN H (ATHVA22H) (HVA22H); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: TB2/DP1 and HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: abscisic acid-responsive HVA22 family protein (TAIR:AT5G42560.1); Has 9477 Blast hits to 7351 proteins in 617 species: Archae - 22; Bacteria - 1240; Metazoa - 3851; Fungi - 1319; Plants - 1340; Viruses - 296; Other Eukaryotes - 1409 (source: NCBI BLink).  protein_id AT1G19950.1p  transcript_id AT1G19950.1  protein_id AT1G19950.1p  transcript_id AT1G19950.1  
At1g19960	chr1:006928083	0.0	W/6928083-6928277	AT1G19960.1  CDS  gene_syn T20H2.25, T20H2_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: transmembrane receptor (TAIR:AT2G32140.1); Has 41 Blast hits to 41 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 25; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G19960.1p  transcript_id AT1G19960.1  protein_id AT1G19960.1p  transcript_id AT1G19960.1  
At1g19968	chr1:006930261	0.0	W/6930261-6930985	AT1G19968.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G19968.1  
At1g19970	chr1:006932375	0.0	C/6932375-6932597,6932069-6932268,6931719-6931859,6931545-6931625,6931341-6931465,6931194-6931242	AT1G19970.1  CDS  gene_syn T20H2.24, T20H2_24  go_component integral to membrane|GO:0016021||IEA  go_process protein retention in ER lumen|GO:0006621||IEA  go_function ER retention sequence binding|GO:0046923||IEA  go_component integral to membrane|GO:0016021||ISS  go_process protein transport|GO:0015031||ISS  go_function receptor activity|GO:0004872||ISS  product ER lumen protein retaining receptor family protein  note ER lumen protein retaining receptor family protein; FUNCTIONS IN: ER retention sequence binding, receptor activity; INVOLVED IN: protein retention in ER lumen, protein transport; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ER lumen protein retaining receptor (InterPro:IPR000133); BEST Arabidopsis thaliana protein match is: ER lumen protein retaining receptor family protein (TAIR:AT1G75760.1); Has 628 Blast hits to 627 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 265; Fungi - 114; Plants - 121; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).  protein_id AT1G19970.1p  transcript_id AT1G19970.1  protein_id AT1G19970.1p  transcript_id AT1G19970.1  
At1g19980	chr1:006933162	0.0	W/6933162-6933365,6933489-6933600,6933696-6933760,6933853-6934371,6934515-6934643	AT1G19980.1  CDS  gene_syn T20H2.28, T20H2_28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product cytomatrix protein-related  note cytomatrix protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT1G77580.2); Has 7059 Blast hits to 5171 proteins in 438 species: Archae - 61; Bacteria - 623; Metazoa - 3252; Fungi - 506; Plants - 140; Viruses - 27; Other Eukaryotes - 2450 (source: NCBI BLink).  protein_id AT1G19980.1p  transcript_id AT1G19980.1  protein_id AT1G19980.1p  transcript_id AT1G19980.1  
At1g19990	chr1:006935327	0.0	W/6935327-6935611,6935718-6935813,6935904-6935974,6936362-6936665	AT1G19990.1  CDS  gene_syn T20H2.23, T20H2_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11600.1); Has 10416 Blast hits to 6328 proteins in 368 species: Archae - 4; Bacteria - 381; Metazoa - 4559; Fungi - 839; Plants - 384; Viruses - 34; Other Eukaryotes - 4215 (source: NCBI BLink).  protein_id AT1G19990.1p  transcript_id AT1G19990.1  protein_id AT1G19990.1p  transcript_id AT1G19990.1  
At1g20000	chr1:006937575	0.0	C/6937575-6937666,6936898-6937420	AT1G20000.1  CDS  gene_syn T20H2.22, T20H2_22, TAF11b, TBP-ASSOCIATED FACTOR 11b  gene TAF11b  function Encodes TAF11b, a putative TBP-associated factor (TBP: TATA binding protein).  go_component nucleus|GO:0005634||IEA  go_process transcription initiation from RNA polymerase II promoter|GO:0006367||IEA  go_function DNA binding|GO:0003677||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  go_process transcription|GO:0006350||ISS  go_function transcription initiation factor activity|GO:0016986||ISS  product TAF11b (TBP-ASSOCIATED FACTOR 11b); DNA binding / RNA polymerase II transcription factor/ transcription initiation factor  note TBP-ASSOCIATED FACTOR 11b (TAF11b); FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity, DNA binding; INVOLVED IN: transcription initiation from RNA polymerase II promoter, transcription; LOCATED IN: nucleus; EXPRESSED IN: inflorescence, root, leaf; CONTAINS InterPro DOMAIN/s: TAFII28-like protein (InterPro:IPR006809), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: TAF11 (TBP-ASSOCIATED FACTOR 11); DNA binding / RNA polymerase II transcription factor/ transcription initiation factor (TAIR:AT4G20280.1); Has 271 Blast hits to 271 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 188; Fungi - 46; Plants - 22; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G20000.1p  transcript_id AT1G20000.1  protein_id AT1G20000.1p  transcript_id AT1G20000.1  
At1g20010	chr1:006940085	0.0	C/6940085-6940481,6938795-6939064,6938033-6938715	AT1G20010.1  CDS  gene_syn T20H2.21, T20H2_21, TUB5  gene TUB5  function beta tubulin  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component tubulin complex|GO:0045298|1498609|ISS  go_process microtubule-based process|GO:0007017|1498609|ISS  go_function structural constituent of cytoskeleton|GO:0005200|1498609|ISS  product TUB5; structural constituent of cytoskeleton  note TUB5; FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: microtubule-based process; LOCATED IN: tubulin complex, cell wall, plasma membrane, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase (InterPro:IPR003008), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: TUB1; GTP binding / GTPase/ structural molecule (TAIR:AT1G75780.1); Has 17208 Blast hits to 17152 proteins in 3651 species: Archae - 34; Bacteria - 35; Metazoa - 3622; Fungi - 9655; Plants - 1012; Viruses - 0; Other Eukaryotes - 2850 (source: NCBI BLink).  protein_id AT1G20010.1p  transcript_id AT1G20010.1  protein_id AT1G20010.1p  transcript_id AT1G20010.1  
At1g20015	chr1:006941285	0.0	W/6941285-6941373	AT1G20015.1  snoRNA  gene_syn 51902.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT1G20015.1  
At1g20020	chr1:006942851	0.0	W/6942851-6942955,6943228-6943483,6943582-6943658,6943791-6943869,6943955-6944046,6944164-6944241,6944319-6944381,6944479-6944713,6944801-6944868	AT1G20020.2  CDS  gene_syn ATLFNR2, FERREDOXIN-NADP(+)-OXIDOREDUCTASE 2, FERREDOXIN:NADP(H) OXIDOREDUCTASE, FNR2, LEAF FNR 2, T20H2.20, T20H2_20  gene FNR2  function Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the stroma  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast thylakoid membrane|GO:0009535||IDA  go_component chloroplast stroma|GO:0009570||IDA  go_process oxidation reduction|GO:0055114||IDA  go_function NADPH dehydrogenase activity|GO:0003959||IDA  go_function poly(U) binding|GO:0008266|17511964|IDA  go_function oxidoreductase activity|GO:0016491||ISS  product FNR2 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 2); NADPH dehydrogenase/ oxidoreductase/ poly(U) binding  note LEAF FNR 2 (ATLFNR2); FUNCTIONS IN: oxidoreductase activity, poly(U) binding, NADPH dehydrogenase activity; INVOLVED IN: oxidation reduction, defense response to bacterium; LOCATED IN: thylakoid, chloroplast thylakoid membrane, apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), Ferredoxin--NADP reductase (InterPro:IPR012146); BEST Arabidopsis thaliana protein match is: FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1); NADPH dehydrogenase/ electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis/ electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis/ oxidoreductase/ poly(U) binding (TAIR:AT5G66190.1); Has 4539 Blast hits to 4539 proteins in 1033 species: Archae - 6; Bacteria - 2052; Metazoa - 670; Fungi - 492; Plants - 440; Viruses - 0; Other Eukaryotes - 879 (source: NCBI BLink).  protein_id AT1G20020.2p  transcript_id AT1G20020.2  protein_id AT1G20020.2p  transcript_id AT1G20020.2  
At1g20020	chr1:006942851	0.0	W/6942851-6942955,6943228-6943483,6943582-6943715,6943791-6943869,6943955-6944046,6944164-6944241,6944319-6944381,6944479-6944713,6944801-6944868	AT1G20020.1  CDS  gene_syn ATLFNR2, FERREDOXIN-NADP(+)-OXIDOREDUCTASE 2, FERREDOXIN:NADP(H) OXIDOREDUCTASE, FNR2, LEAF FNR 2, T20H2.20, T20H2_20  gene FNR2  function Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the stroma  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_component chloroplast thylakoid membrane|GO:0009535||IDA  go_component chloroplast stroma|GO:0009570||IDA  go_process oxidation reduction|GO:0055114||IDA  go_function NADPH dehydrogenase activity|GO:0003959||IDA  go_function poly(U) binding|GO:0008266|17511964|IDA  go_function oxidoreductase activity|GO:0016491||ISS  product FNR2 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 2); NADPH dehydrogenase/ oxidoreductase/ poly(U) binding  note FERREDOXIN-NADP(+)-OXIDOREDUCTASE 2 (FNR2); FUNCTIONS IN: oxidoreductase activity, poly(U) binding, NADPH dehydrogenase activity; INVOLVED IN: oxidation reduction, defense response to bacterium; LOCATED IN: thylakoid, chloroplast thylakoid membrane, apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), Ferredoxin--NADP reductase (InterPro:IPR012146); BEST Arabidopsis thaliana protein match is: FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1); NADPH dehydrogenase/ electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis/ electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis/ oxidoreductase/ poly(U) binding (TAIR:AT5G66190.1); Has 4694 Blast hits to 4694 proteins in 1063 species: Archae - 8; Bacteria - 2171; Metazoa - 676; Fungi - 511; Plants - 442; Viruses - 0; Other Eukaryotes - 886 (source: NCBI BLink).  protein_id AT1G20020.1p  transcript_id AT1G20020.1  protein_id AT1G20020.1p  transcript_id AT1G20020.1  
At1g20020	chr1:006942851	0.0	W/6942851-6942955,6943228-6943486,6943585-6943715,6943791-6943869,6943955-6944046,6944164-6944241,6944319-6944381,6944479-6944713,6944801-6944868	AT1G20020.3  CDS  gene_syn ATLFNR2, FERREDOXIN-NADP(+)-OXIDOREDUCTASE 2, FERREDOXIN:NADP(H) OXIDOREDUCTASE, FNR2, LEAF FNR 2, T20H2.20, T20H2_20  gene FNR2  function Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the stroma  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast thylakoid membrane|GO:0009535||IDA  go_component chloroplast stroma|GO:0009570||IDA  go_process oxidation reduction|GO:0055114||IDA  go_function NADPH dehydrogenase activity|GO:0003959||IDA  go_function poly(U) binding|GO:0008266|17511964|IDA  go_function oxidoreductase activity|GO:0016491||ISS  product FNR2 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 2); NADPH dehydrogenase/ oxidoreductase/ poly(U) binding  note LEAF FNR 2 (ATLFNR2); FUNCTIONS IN: oxidoreductase activity, poly(U) binding, NADPH dehydrogenase activity; INVOLVED IN: oxidation reduction, defense response to bacterium; LOCATED IN: thylakoid, chloroplast thylakoid membrane, apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), Ferredoxin--NADP reductase (InterPro:IPR012146); BEST Arabidopsis thaliana protein match is: FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1); NADPH dehydrogenase/ electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis/ electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis/ oxidoreductase/ poly(U) binding (TAIR:AT5G66190.1); Has 4696 Blast hits to 4696 proteins in 1063 species: Archae - 8; Bacteria - 2171; Metazoa - 676; Fungi - 511; Plants - 442; Viruses - 0; Other Eukaryotes - 888 (source: NCBI BLink).  protein_id AT1G20020.3p  transcript_id AT1G20020.3  protein_id AT1G20020.3p  transcript_id AT1G20020.3  
At1g20030	chr1:006945725	0.0	W/6945725-6945770,6945845-6946547,6946816-6947017	AT1G20030.2  CDS  gene_syn T20H2.19, T20H2_19  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process response to other organism|GO:0051707||ISS  go_function molecular_function|GO:0003674||ND  product pathogenesis-related thaumatin family protein  note pathogenesis-related thaumatin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: anchored to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: pathogenesis-related thaumatin family protein (TAIR:AT1G75800.1); Has 1058 Blast hits to 1048 proteins in 144 species: Archae - 0; Bacteria - 24; Metazoa - 48; Fungi - 45; Plants - 930; Viruses - 2; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G20030.2p  transcript_id AT1G20030.2  protein_id AT1G20030.2p  transcript_id AT1G20030.2  
At1g20030	chr1:006945850	0.0	W/6945850-6946547,6946816-6947017	AT1G20030.1  CDS  gene_syn T20H2.19, T20H2_19  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process response to other organism|GO:0051707||ISS  go_function molecular_function|GO:0003674||ND  product pathogenesis-related thaumatin family protein  note pathogenesis-related thaumatin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: anchored to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: pathogenesis-related thaumatin family protein (TAIR:AT1G75800.1); Has 1057 Blast hits to 1048 proteins in 144 species: Archae - 0; Bacteria - 24; Metazoa - 48; Fungi - 45; Plants - 929; Viruses - 2; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G20030.1p  transcript_id AT1G20030.1  protein_id AT1G20030.1p  transcript_id AT1G20030.1  
At1g20040	chr1:006948860	0.0	C/6948860-6948943	AT1G20040.1  tRNA  gene_syn 51902.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: CAA)  transcript_id AT1G20040.1  
At1g20050	chr1:006949160	0.0	W/6949160-6949301,6949440-6949580,6949667-6949775,6949856-6950135	AT1G20050.1  CDS  gene_syn HYD1, HYDRA1  gene HYD1  function C-8 sterol isomerase  go_component plasma membrane|GO:0005886|17317660|IDA  go_process sterol biosynthetic process|GO:0016126|12100483|TAS  go_function C-8 sterol isomerase activity|GO:0000247|9862498|IMP  product HYD1 (HYDRA1); C-8 sterol isomerase  note HYDRA1 (HYD1); FUNCTIONS IN: C-8 sterol isomerase activity; INVOLVED IN: sterol biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Emopamil-binding (InterPro:IPR007905); Has 258 Blast hits to 258 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 103; Fungi - 107; Plants - 27; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G20050.1p  transcript_id AT1G20050.1  protein_id AT1G20050.1p  transcript_id AT1G20050.1  
At1g20060	chr1:006955769	0.0	C/6955769-6956293,6955479-6955678,6955205-6955331,6955008-6955102,6954675-6954810,6954157-6954321,6953998-6954048,6953818-6953900,6953632-6953734,6953470-6953515,6953146-6953300,6952827-6953012,6952656-6952745,6952479-6952571,6952309-6952398,6952132-6952224,6951955-6952014,6951778-6951864,6951550-6951680,6951334-6951424,6951086-6951213,6950917-6950998,6950723-6950818	AT1G20060.1  CDS  gene_syn T20H2.17, T20H2_17  go_component microtubule associated complex|GO:0005875||IEA  go_component chloroplast|GO:0009507||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product ATP binding / microtubule motor  note ATP binding / microtubule motor; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex, chloroplast; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin-related protein (MKRP2) (TAIR:AT4G39050.1); Has 7948 Blast hits to 7493 proteins in 293 species: Archae - 4; Bacteria - 155; Metazoa - 4017; Fungi - 990; Plants - 805; Viruses - 2; Other Eukaryotes - 1975 (source: NCBI BLink).  protein_id AT1G20060.1p  transcript_id AT1G20060.1  protein_id AT1G20060.1p  transcript_id AT1G20060.1  
At1g20065	chr1:006956521	0.0	W/6956521-6958075	AT1G20065.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G20070  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G20065.1  
At1g20065	chr1:006956973	0.0	W/6956973-6957348	AT1G20065.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G20070  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G20065.2  
At1g20070	chr1:006958244	0.0	C/6958244-6958825	AT1G20070.1  CDS  gene_syn T20H2.15, T20H2_15  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; Has 14 Blast hits to 14 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G20070.1p  transcript_id AT1G20070.1  protein_id AT1G20070.1p  transcript_id AT1G20070.1  
At1g20080	chr1:006962236	0.0	W/6962236-6962346,6962533-6962631,6962717-6962767,6962869-6962992,6963086-6963204,6963278-6963379,6963460-6963534,6963639-6963715,6963802-6964048,6964127-6964477,6964562-6964687,6964781-6964912	AT1G20080.1  CDS  gene_syn ATSYTB, NTMC2T1.2, NTMC2TYPE1.2, SYTB, T20H2.13, T20H2_13  gene SYTB  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SYTB  note SYTB; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: SYTA (SYNAPTOTAGMIN A) (TAIR:AT2G20990.1); Has 5745 Blast hits to 4253 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 4108; Fungi - 601; Plants - 651; Viruses - 0; Other Eukaryotes - 385 (source: NCBI BLink).  protein_id AT1G20080.1p  transcript_id AT1G20080.1  protein_id AT1G20080.1p  transcript_id AT1G20080.1  
At1g20090	chr1:006967223	0.0	W/6967223-6967318,6967617-6967704,6967790-6967899,6967981-6968044,6968193-6968257,6968340-6968405,6968505-6968603	AT1G20090.1  CDS  gene_syn ARAC4, ATRAC4, ATROP2, GTP-BINDING PROTEIN ARAC4, RHO-RELATED PROTEIN FROM PLANTS 2, ROP2, T20H2.12, T20H2_12  gene ROP2  function Member of the Rho GTPase family. Functions to organize the microtubular cytoskeleton in combination with RIC1 and RIC4. These interactions affect pavement cell morphogenesis and pollen tube growth. ROP2 expression is stimulated by brassinosteroid treatment. Inhibit light-induced stomatal opening.  go_component nucleus|GO:0005634|15469496|IDA  go_component nucleolus|GO:0005730|15469496|IDA  go_component cytoplasm|GO:0005737|15469496|IDA  go_component plasma membrane|GO:0005886|18178769|IDA  go_process microtubule cytoskeleton organization|GO:0000226|15766531|IMP  go_process cell morphogenesis|GO:0000902|15766531|IGI  go_process response to light stimulus|GO:0009416|18178769|IDA  go_process pollen tube growth|GO:0009860|12456757|IMP  go_process regulation of stomatal movement|GO:0010119|18178769|IMP  go_function GTP binding|GO:0005525|9349271|ISS  go_function GTP binding|GO:0005525||ISS  product ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2); GTP binding  note RHO-RELATED PROTEIN FROM PLANTS 2 (ROP2); FUNCTIONS IN: GTP binding; INVOLVED IN: cell morphogenesis, response to light stimulus, pollen tube growth, regulation of stomatal movement, microtubule cytoskeleton organization; LOCATED IN: nucleolus, plasma membrane, nucleus, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Ras small GTPase, Ras type (InterPro:IPR003577), Ras small GTPase, Rho type (InterPro:IPR003578); BEST Arabidopsis thaliana protein match is: ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5); GTP binding / GTPase (TAIR:AT1G75840.1); Has 19864 Blast hits to 19840 proteins in 570 species: Archae - 9; Bacteria - 52; Metazoa - 10854; Fungi - 2716; Plants - 1721; Viruses - 19; Other Eukaryotes - 4493 (source: NCBI BLink).  protein_id AT1G20090.1p  transcript_id AT1G20090.1  protein_id AT1G20090.1p  transcript_id AT1G20090.1  
At1g20100	chr1:006970619	0.0	C/6970619-6970699,6969909-6970179,6969314-6969819	AT1G20100.1  CDS  gene_syn T20H2.11, T20H2_11  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75860.1); Has 414 Blast hits to 390 proteins in 79 species: Archae - 0; Bacteria - 9; Metazoa - 214; Fungi - 37; Plants - 53; Viruses - 1; Other Eukaryotes - 100 (source: NCBI BLink).  protein_id AT1G20100.1p  transcript_id AT1G20100.1  protein_id AT1G20100.1p  transcript_id AT1G20100.1  
At1g20100	chr1:006970619	0.0	C/6970619-6970699,6969909-6970179,6969620-6969819,6969409-6969507	AT1G20100.2  CDS  gene_syn T20H2.11, T20H2_11  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75860.1); Has 59 Blast hits to 59 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 14; Fungi - 0; Plants - 32; Viruses - 1; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G20100.2p  transcript_id AT1G20100.2  protein_id AT1G20100.2p  transcript_id AT1G20100.2  
At1g20110	chr1:006971554	0.0	W/6971554-6972558,6972631-6972717,6972810-6972941,6973043-6973174,6973329-6973394,6973480-6973590,6973736-6973828,6973938-6973971,6974062-6974129,6974501-6974578	AT1G20110.1  CDS  gene_syn T20H2.10, T20H2_10  go_process signal transduction|GO:0007165|15358268|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product zinc finger (FYVE type) family protein  note zinc finger (FYVE type) family protein; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, FYVE-type (InterPro:IPR000306), Zinc finger, FYVE-related (InterPro:IPR017455), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: phosphatidylinositol-4-phosphate 5-kinase family protein (TAIR:AT3G14270.1); Has 25361 Blast hits to 16508 proteins in 676 species: Archae - 11; Bacteria - 1450; Metazoa - 10130; Fungi - 5149; Plants - 3412; Viruses - 575; Other Eukaryotes - 4634 (source: NCBI BLink).  protein_id AT1G20110.1p  transcript_id AT1G20110.1  protein_id AT1G20110.1p  transcript_id AT1G20110.1  
At1g20120	chr1:006975504	0.0	W/6975504-6975891,6976030-6976160,6976263-6976496,6976582-6976837,6976924-6977123	AT1G20120.1  CDS  gene_syn T20H2.29, T20H2_29  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function lipase activity|GO:0016298||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298||ISS  product family II extracellular lipase, putative  note family II extracellular lipase, putative; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: hydrolase, acting on ester bonds / lipase (TAIR:AT1G20132.1); Has 2156 Blast hits to 2064 proteins in 232 species: Archae - 6; Bacteria - 355; Metazoa - 19; Fungi - 55; Plants - 1595; Viruses - 3; Other Eukaryotes - 123 (source: NCBI BLink).  protein_id AT1G20120.1p  transcript_id AT1G20120.1  protein_id AT1G20120.1p  transcript_id AT1G20120.1  
At1g20130	chr1:006977939	0.0	W/6977939-6978704,6978870-6979000,6979090-6979353,6979472-6979718,6979807-6980003	AT1G20130.1  CDS  gene_syn T20H2.9, T20H2_9  go_process lipid metabolic process|GO:0006629||IEA  go_function structural constituent of cell wall|GO:0005199||IEA  go_function lipase activity|GO:0016298||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function lipase activity|GO:0016298||ISS  product hydrolase, acting on ester bonds / lipase/ structural constituent of cell wall  note hydrolase, acting on ester bonds / lipase/ structural constituent of cell wall; FUNCTIONS IN: structural constituent of cell wall, lipase activity, hydrolase activity, acting on ester bonds; INVOLVED IN: lipid metabolic process; CONTAINS InterPro DOMAIN/s: Pistil-specific extensin-like protein (InterPro:IPR003882), Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: hydrolase, acting on ester bonds / lipase (TAIR:AT1G20132.1); Has 281578 Blast hits to 80004 proteins in 2359 species: Archae - 1215; Bacteria - 68733; Metazoa - 101691; Fungi - 27522; Plants - 27422; Viruses - 8283; Other Eukaryotes - 46712 (source: NCBI BLink).  protein_id AT1G20130.1p  transcript_id AT1G20130.1  protein_id AT1G20130.1p  transcript_id AT1G20130.1  
At1g20132	chr1:006981358	0.0	W/6981358-6981694,6981876-6982006,6982081-6982314,6982958-6983213,6983302-6983495	AT1G20132.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function lipase activity|GO:0016298||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  product hydrolase, acting on ester bonds / lipase  note hydrolase, acting on ester bonds / lipase; FUNCTIONS IN: hydrolase activity, acting on ester bonds, lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: hydrolase, acting on ester bonds / lipase/ structural constituent of cell wall (TAIR:AT1G20130.1); Has 1972 Blast hits to 1941 proteins in 215 species: Archae - 0; Bacteria - 336; Metazoa - 1; Fungi - 16; Plants - 1595; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT1G20132.1p  transcript_id AT1G20132.1  protein_id AT1G20132.1p  transcript_id AT1G20132.1  
At1g20135	chr1:006984124	0.0	W/6984124-6984364,6984497-6984627,6984716-6984952,6985034-6985283,6985371-6985498	AT1G20135.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function lipase activity|GO:0016298||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  product hydrolase, acting on ester bonds / lipase  note hydrolase, acting on ester bonds / lipase; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, flower, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase, putative (TAIR:AT5G63170.1); Has 1564 Blast hits to 1551 proteins in 75 species: Archae - 0; Bacteria - 61; Metazoa - 1; Fungi - 6; Plants - 1494; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G20135.1p  transcript_id AT1G20135.1  protein_id AT1G20135.1p  transcript_id AT1G20135.1  
At1g20140	chr1:006986430	0.0	W/6986430-6986747,6986906-6987079	AT1G20140.1  CDS  gene_syn ARABIDOPSIS SKP1-LIKE 4, ASK4, T20H2.8, T20H2_8  gene ASK4  go_function protein binding|GO:0005515||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleolus|GO:0005730|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component SCF ubiquitin ligase complex|GO:0019005|12970487|ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|12970487|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product ASK4 (ARABIDOPSIS SKP1-LIKE 4); protein binding / ubiquitin-protein ligase  note ARABIDOPSIS SKP1-LIKE 4 (ASK4); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: SCF ubiquitin ligase complex, nucleolus, nucleus, cytoplasm; EXPRESSED IN: inflorescence meristem, male gametophyte, valve, septum, seed; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: ASK3 (ARABIDOPSIS SKP1-LIKE 3); protein binding / ubiquitin-protein ligase (TAIR:AT2G25700.1); Has 1096 Blast hits to 1094 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 499; Fungi - 112; Plants - 354; Viruses - 11; Other Eukaryotes - 120 (source: NCBI BLink).  protein_id AT1G20140.1p  transcript_id AT1G20140.1  protein_id AT1G20140.1p  transcript_id AT1G20140.1  
At1g20150	chr1:006990183	0.0	C/6990183-6990361,6989831-6990096,6989617-6989734,6989021-6989534,6988851-6988951,6988530-6988772,6988304-6988418,6988007-6988217,6987332-6987927	AT1G20150.1  CDS  gene_syn T20H2.7, T20H2_7  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product subtilase family protein  note subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower, root, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: ATSBT5.2; identical protein binding / serine-type endopeptidase (TAIR:AT1G20160.1); Has 3312 Blast hits to 3103 proteins in 608 species: Archae - 102; Bacteria - 1740; Metazoa - 90; Fungi - 189; Plants - 889; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink).  protein_id AT1G20150.1p  transcript_id AT1G20150.1  protein_id AT1G20150.1p  transcript_id AT1G20150.1  
At1g20160	chr1:006993670	0.0	C/6993670-6993737,6993329-6993582,6993113-6993224,6992516-6993029,6992338-6992438,6991987-6992229,6991791-6991905,6991507-6991717,6990852-6991426	AT1G20160.2  CDS  gene_syn ATSBT5.2, T20H2.6, T20H2_6  gene ATSBT5.2  go_component apoplast|GO:0048046|18538804|IDA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_component apoplast|GO:0048046||IDA  go_process proteolysis|GO:0006508||ISS  product ATSBT5.2; identical protein binding / serine-type endopeptidase  note ATSBT5.2; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: apoplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT1G20150.1); Has 5181 Blast hits to 4418 proteins in 775 species: Archae - 163; Bacteria - 2861; Metazoa - 164; Fungi - 474; Plants - 898; Viruses - 0; Other Eukaryotes - 621 (source: NCBI BLink).  protein_id AT1G20160.2p  transcript_id AT1G20160.2  protein_id AT1G20160.2p  transcript_id AT1G20160.2  
At1g20160	chr1:006993670	0.0	C/6993670-6993854,6993329-6993582,6993113-6993224,6992516-6993029,6992338-6992438,6991987-6992229,6991791-6991905,6991507-6991717,6990852-6991426	AT1G20160.1  CDS  gene_syn ATSBT5.2, T20H2.6, T20H2_6  gene ATSBT5.2  go_component apoplast|GO:0048046|18538804|IDA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_component apoplast|GO:0048046||IDA  go_process proteolysis|GO:0006508||ISS  product ATSBT5.2; identical protein binding / serine-type endopeptidase  note ATSBT5.2; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: apoplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT1G20150.1); Has 5222 Blast hits to 4440 proteins in 781 species: Archae - 163; Bacteria - 2880; Metazoa - 167; Fungi - 492; Plants - 899; Viruses - 0; Other Eukaryotes - 621 (source: NCBI BLink).  protein_id AT1G20160.1p  transcript_id AT1G20160.1  protein_id AT1G20160.1p  transcript_id AT1G20160.1  
At1g20170	chr1:006995282	0.0	C/6995282-6995353	AT1G20170.1  tRNA  gene_syn 51902.TRNA-GLU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Glu (anticodon: TTC)  transcript_id AT1G20170.1  
At1g20180	chr1:006996354	0.0	W/6996354-6996411,6996665-6997265,6997359-6997779	AT1G20180.2  CDS  gene_syn T20H2.5, T20H2_5  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49070.1); Has 71 Blast hits to 71 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G20180.2p  transcript_id AT1G20180.2  protein_id AT1G20180.2p  transcript_id AT1G20180.2  
At1g20180	chr1:006996354	0.0	W/6996354-6996411,6996665-6997779	AT1G20180.1  CDS  gene_syn T20H2.5, T20H2_5  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49070.1); Has 104 Blast hits to 104 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G20180.1p  transcript_id AT1G20180.1  protein_id AT1G20180.1p  transcript_id AT1G20180.1  
At1g20190	chr1:006999581	0.0	C/6999581-6999710,6999175-6999496,6998762-6999068	AT1G20190.1  CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN 11, ATEXP11, ATEXPA11, ATHEXP ALPHA 1.14, EXP11, EXPANSIN 11, T20H2.4, T20H2_4  gene ATEXPA11  function member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)  go_component cell wall|GO:0005618|15593128|IDA  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828||ISS  go_process plant-type cell wall modification during multidimensional cell growth|GO:0009831||ISS  product ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)  note ARABIDOPSIS THALIANA EXPANSIN 11 (ATEXPA11); INVOLVED IN: plant-type cell wall modification during multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1) (TAIR:AT1G69530.4); Has 1456 Blast hits to 1454 proteins in 132 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 48; Plants - 1370; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT1G20190.1p  transcript_id AT1G20190.1  protein_id AT1G20190.1p  transcript_id AT1G20190.1  
At1g20200	chr1:007004076	0.0	C/7004076-7004154,7003792-7003982,7003460-7003600,7003234-7003370,7003078-7003132,7002879-7002989,7002272-7002511,7001409-7001921	AT1G20200.1  CDS  gene_syn EMB2719, EMBRYO DEFECTIVE 2719, HAP15, HAPLESS 15, T20H2.3, T20H2_3  gene EMB2719  go_component plasma membrane|GO:0005886|17317660|IDA  go_function enzyme regulator activity|GO:0030234||IEA  go_component proteasome regulatory particle, lid subcomplex|GO:0008541||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product EMB2719 (EMBRYO DEFECTIVE 2719); enzyme regulator  note EMBRYO DEFECTIVE 2719 (EMB2719); FUNCTIONS IN: enzyme regulator activity; INVOLVED IN: embryonic development ending in seed dormancy, ubiquitin-dependent protein catabolic process; LOCATED IN: plasma membrane, proteasome regulatory particle, lid subcomplex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component region PCI (InterPro:IPR000717), PCI/PINT associated module (InterPro:IPR013143), 26S proteasome regulatory subunit, C-terminal (InterPro:IPR013586); BEST Arabidopsis thaliana protein match is: 26S proteasome regulatory subunit S3, putative (RPN3) (TAIR:AT1G75990.1); Has 549 Blast hits to 549 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 253; Fungi - 109; Plants - 101; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT1G20200.1p  transcript_id AT1G20200.1  protein_id AT1G20200.1p  transcript_id AT1G20200.1  
At1g20210	chr1:007004514	0.0	W/7004514-7004585	AT1G20210.1  tRNA  gene_syn 51902.TRNA-ASP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asp (anticodon: GTC)  transcript_id AT1G20210.1  
At1g20220	chr1:007007163	0.0	C/7007163-7007285,7006685-7006765,7006510-7006598,7006305-7006379,7006115-7006179,7005953-7006027,7005779-7005835,7005615-7005671,7005262-7005495,7005090-7005181	AT1G20220.1  CDS  gene_syn T20H2.2, T20H2_2  go_function nucleic acid binding|GO:0003676||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alba, DNA/RNA-binding protein (InterPro:IPR002775); BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT1G76010.1); Has 42345 Blast hits to 16680 proteins in 1015 species: Archae - 19; Bacteria - 12355; Metazoa - 15425; Fungi - 3233; Plants - 4676; Viruses - 581; Other Eukaryotes - 6056 (source: NCBI BLink).  protein_id AT1G20220.1p  transcript_id AT1G20220.1  protein_id AT1G20220.1p  transcript_id AT1G20220.1  
At1g20225	chr1:007009065	0.0	C/7009065-7009318,7008722-7008824,7008413-7008574,7007966-7008148	AT1G20225.1  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76020.1); Has 156 Blast hits to 152 proteins in 51 species: Archae - 0; Bacteria - 81; Metazoa - 14; Fungi - 6; Plants - 28; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT1G20225.1p  transcript_id AT1G20225.1  protein_id AT1G20225.1p  transcript_id AT1G20225.1  
At1g20230	chr1:007009570	0.0	W/7009570-7011852	AT1G20230.1  CDS  gene_syn T20H2.1, T20H2_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G23330.1); Has 15470 Blast hits to 5271 proteins in 170 species: Archae - 0; Bacteria - 2; Metazoa - 110; Fungi - 76; Plants - 14880; Viruses - 0; Other Eukaryotes - 402 (source: NCBI BLink).  protein_id AT1G20230.1p  transcript_id AT1G20230.1  protein_id AT1G20230.1p  transcript_id AT1G20230.1  
At1g20240	chr1:007014498	0.0	C/7014498-7015216,7012113-7013094	AT1G20240.1  CDS  gene_syn F14O10.14, F14O10_14  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G20940.1); Has 59 Blast hits to 30 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G20240.1p  transcript_id AT1G20240.1  protein_id AT1G20240.1p  transcript_id AT1G20240.1  
At1g20250	chr1:007016516	0.0	W/7016516-7016588	AT1G20250.1  tRNA  gene_syn 61418.TRNA-LYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Lys (anticodon: CTT)  transcript_id AT1G20250.1  
At1g20260	chr1:007016971	0.0	W/7016971-7017022,7017436-7017491,7017596-7017694,7017821-7017880,7018032-7018143,7018230-7018441,7018717-7018845,7018963-7019100,7019188-7019338,7019429-7019511,7019640-7019687,7019777-7019830,7019922-7020005,7020105-7020290	AT1G20260.1  CDS  gene_syn F14O10.13, F14O10_13, VHA-B3  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_process proton transport|GO:0015992||IEA  go_process ATP metabolic process|GO:0046034||IEA  go_function hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances|GO:0016820||IEA  go_function hydrogen ion transporting ATP synthase activity, rotational mechanism|GO:0046933||IEA  go_function proton-transporting ATPase activity, rotational mechanism|GO:0046961||IEA  product hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism  note hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: proton transport, ATP metabolic process, ATP synthesis coupled proton transport; LOCATED IN: plasma membrane, chloroplast, vacuole; EXPRESSED IN: cotyledon, male gametophyte, guard cell, cultured cell; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal (InterPro:IPR000793), ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR004100), ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding (InterPro:IPR000194), ATPase, V1 complex, subunit B (InterPro:IPR005723); BEST Arabidopsis thaliana protein match is: vacuolar ATP synthase subunit B / V-ATPase B subunit / vacuolar proton pump B subunit / V-ATPase 57 kDa subunit (TAIR:AT1G76030.1); Has 27320 Blast hits to 26657 proteins in 6970 species: Archae - 676; Bacteria - 12331; Metazoa - 1302; Fungi - 527; Plants - 6592; Viruses - 0; Other Eukaryotes - 5892 (source: NCBI BLink).  protein_id AT1G20260.1p  transcript_id AT1G20260.1  protein_id AT1G20260.1p  transcript_id AT1G20260.1  
At1g20270	chr1:007022733	0.0	C/7022733-7022923,7022562-7022646,7022327-7022424,7022116-7022213,7021832-7021961,7021558-7021745,7021383-7021456	AT1G20270.1  CDS  gene_syn F14O10.12, F14O10_12  go_process protein metabolic process|GO:0019538||IEA  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||IEA  go_process peptidyl-proline hydroxylation to 4-hydroxy-L-proline|GO:0018401||ISS  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding; INVOLVED IN: protein metabolic process, peptidyl-proline hydroxylation to 4-hydroxy-L-proline; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (TAIR:AT5G66060.1); Has 1891 Blast hits to 1879 proteins in 224 species: Archae - 0; Bacteria - 202; Metazoa - 941; Fungi - 57; Plants - 221; Viruses - 14; Other Eukaryotes - 456 (source: NCBI BLink).  protein_id AT1G20270.1p  transcript_id AT1G20270.1  protein_id AT1G20270.1p  transcript_id AT1G20270.1  
At1g20280	chr1:007023829	0.0	W/7023829-7023916,7024085-7024212	AT1G20280.1  CDS  gene_syn F14O10.15, F14O10_15  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product homeobox-leucine zipper protein-related  note homeobox-leucine zipper protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, 4 anthesis; BEST Arabidopsis thaliana protein match is: homeobox-leucine zipper protein-related (TAIR:AT1G61200.1); Has 13 Blast hits to 13 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G20280.1p  transcript_id AT1G20280.1  protein_id AT1G20280.1p  transcript_id AT1G20280.1  
At1g20290	chr1:007029618	0.0	C/7029618-7029698,7028359-7028569,7026413-7026725,7025548-7026091	AT1G20290.1  CDS  gene_syn F14O10.11, F14O10_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20240.1); Has 49 Blast hits to 47 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G20290.1p  transcript_id AT1G20290.1  protein_id AT1G20290.1p  transcript_id AT1G20290.1  
At1g20300	chr1:007029701	0.0	W/7029701-7031314	AT1G20300.1  CDS  gene_syn F14O10.10, F14O10_10  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G77360.1); Has 19529 Blast hits to 6019 proteins in 192 species: Archae - 5; Bacteria - 22; Metazoa - 563; Fungi - 464; Plants - 17637; Viruses - 0; Other Eukaryotes - 838 (source: NCBI BLink).  protein_id AT1G20300.1p  transcript_id AT1G20300.1  protein_id AT1G20300.1p  transcript_id AT1G20300.1  
At1g20310	chr1:007032308	0.0	W/7032308-7033030	AT1G20310.1  CDS  gene_syn F14O10.9, F14O10_9  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76070.1); Has 23 Blast hits to 23 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G20310.1p  transcript_id AT1G20310.1  protein_id AT1G20310.1p  transcript_id AT1G20310.1  
At1g20320	chr1:007033846	0.0	C/7033846-7034874	AT1G20320.1  CDS  gene_syn F14O10.8, F14O10_8  go_component nucleus|GO:0005634||IEA  go_function phosphoprotein phosphatase activity|GO:0004721||IEA  go_process biological_process|GO:0008150||ND  product NLI interacting factor (NIF) family protein  note NLI interacting factor (NIF) family protein; FUNCTIONS IN: phosphoprotein phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: FCP1-like phosphatase, phosphatase domain (InterPro:IPR011947), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: NLI interacting factor (NIF) family protein (TAIR:AT5G54210.1); Has 951 Blast hits to 949 proteins in 157 species: Archae - 0; Bacteria - 2; Metazoa - 250; Fungi - 185; Plants - 131; Viruses - 0; Other Eukaryotes - 383 (source: NCBI BLink).  protein_id AT1G20320.1p  transcript_id AT1G20320.1  protein_id AT1G20320.1p  transcript_id AT1G20320.1  
At1g20330	chr1:007038968	0.0	C/7038968-7040053	AT1G20330.1  CDS  gene_syn COTYLEDON VASCULAR PATTERN 1, CVP1, F14O10.7, F14O10_7, FRILL1, FRL1, SMT2, STEROL METHYLTRANSFERASE 2  gene SMT2  function Encodes a sterol-C24-methyltransferases involved in sterol biosynthesis. Mutants display altered sterol composition, serrated petals and sepals and altered cotyledon vascular patterning as well as ectopic endoreduplication. This suggests that suppression of endoreduplication is important for petal morphogenesis and that normal sterol composition is required for this suppression.  go_component endoplasmic reticulum|GO:0005783|12215504|TAS  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process pattern specification process|GO:0007389|10559439|IMP  go_process multidimensional cell growth|GO:0009825|11029701|IMP  go_process xylem and phloem pattern formation|GO:0010051|12215504|IMP  go_process sterol biosynthetic process|GO:0016126|12215504|TAS  go_process sterol biosynthetic process|GO:0016126|9208946|IDA  go_process DNA endoreduplication|GO:0042023|15737981|IMP  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757|9208946|IDA  product SMT2 (STEROL METHYLTRANSFERASE 2); S-adenosylmethionine-dependent methyltransferase  note STEROL METHYLTRANSFERASE 2 (SMT2); FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity; INVOLVED IN: xylem and phloem pattern formation, multidimensional cell growth, DNA endoreduplication, sterol biosynthetic process, pattern specification process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sterol methyltransferase C-terminal (InterPro:IPR013705), Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: SMT3 (STEROL METHYLTRANSFERASE 3); S-adenosylmethionine-dependent methyltransferase/ sterol 24-C-methyltransferase (TAIR:AT1G76090.1); Has 8186 Blast hits to 8183 proteins in 1283 species: Archae - 253; Bacteria - 4919; Metazoa - 150; Fungi - 299; Plants - 308; Viruses - 0; Other Eukaryotes - 2257 (source: NCBI BLink).  protein_id AT1G20330.1p  transcript_id AT1G20330.1  protein_id AT1G20330.1p  transcript_id AT1G20330.1  
At1g20340	chr1:007042770	0.0	C/7042770-7043273	AT1G20340.1  CDS  gene_syn DRT112, F14O10.6, F14O10_6, PETE2, PLASTOCYANIN 2  gene DRT112  function recombination and DNA-damage resistance protein (DRT112) One of two Arabidopsis plastocyanin genes. Predominant form, expressed 10x higher than PETE1. PETE2 is thought to be post-transcriptionally regulated via copper accumulation and is involved in copper homeostasis.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  go_process response to UV|GO:0009411|8479917|IGI  go_process response to chemical stimulus|GO:0042221|8479917|IGI  go_process response to copper ion|GO:0046688|19084994|IEP  go_process copper ion homeostasis|GO:0055070|19084994|IMP  product DRT112; copper ion binding / electron carrier  note DRT112; FUNCTIONS IN: electron carrier activity, copper ion binding; INVOLVED IN: response to UV, copper ion homeostasis, response to chemical stimulus, response to copper ion; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast stroma, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Blue (type 1) copper protein (InterPro:IPR001235), Cupredoxin (InterPro:IPR008972), Plastocyanin (InterPro:IPR002387), Blue (type 1) copper domain (InterPro:IPR000923); BEST Arabidopsis thaliana protein match is: PETE1 (PLASTOCYANIN 1); copper ion binding / electron carrier (TAIR:AT1G76100.1); Has 1035 Blast hits to 1031 proteins in 168 species: Archae - 66; Bacteria - 284; Metazoa - 0; Fungi - 2; Plants - 169; Viruses - 4; Other Eukaryotes - 510 (source: NCBI BLink).  protein_id AT1G20340.1p  transcript_id AT1G20340.1  protein_id AT1G20340.1p  transcript_id AT1G20340.1  
At1g20350	chr1:007043737	0.0	W/7043737-7044393	AT1G20350.1  CDS  gene_syn ATTIM17-1, F14O10.5, F14O10_5  gene ATTIM17-1  function mitochondrial inner membrane translocase  go_process protein transport|GO:0015031||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744|12692332|TAS  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744||ISS  go_process protein transport|GO:0015031||ISS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product ATTIM17-1; P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter  note ATTIM17-1; FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: mitochondrial inner membrane presequence translocase complex; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial import inner membrane translocase, subunit Tim17/22 (InterPro:IPR003397); BEST Arabidopsis thaliana protein match is: ATTIM17-2; P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter (TAIR:AT2G37410.2); Has 576 Blast hits to 573 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 290; Fungi - 137; Plants - 97; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT1G20350.1p  transcript_id AT1G20350.1  protein_id AT1G20350.1p  transcript_id AT1G20350.1  
At1g20360	chr1:007046767	0.0	C/7046767-7047675	AT1G20360.1  CDS  gene_syn F14O10.4, F14O10_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box protein-related  note F-box protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G20940.1); Has 66 Blast hits to 64 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G20360.1p  transcript_id AT1G20360.1  protein_id AT1G20360.1p  transcript_id AT1G20360.1  
At1g20370	chr1:007052363	0.0	C/7052363-7053588,7051846-7052269	AT1G20370.1  CDS  gene_syn F14O10.3, F14O10_3  go_process pseudouridine synthesis|GO:0001522||IEA  go_process tRNA processing|GO:0008033||IEA  go_component cellular_component|GO:0005575||ND  go_function pseudouridine synthase activity|GO:0009982|18599582|TAS  go_function pseudouridine synthase activity|GO:0009982||ISS  product tRNA pseudouridine synthase family protein  note tRNA pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: tRNA processing, pseudouridine synthesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA pseudouridine synthase (InterPro:IPR001406); BEST Arabidopsis thaliana protein match is: tRNA pseudouridine synthase family protein (TAIR:AT1G76120.1); Has 2413 Blast hits to 2196 proteins in 790 species: Archae - 88; Bacteria - 1223; Metazoa - 281; Fungi - 214; Plants - 87; Viruses - 0; Other Eukaryotes - 520 (source: NCBI BLink).  protein_id AT1G20370.1p  transcript_id AT1G20370.1  protein_id AT1G20370.1p  transcript_id AT1G20370.1  
At1g20375	chr1:007058194	0.0	W/7058194-7058310	AT1G20375.1  miRNA  gene_syn MICRORNA394A, MIR394A  gene MIR394A  function Encodes a microRNA that targets one member of the F-box family. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGGCAUUCUGUCCACCUCC. It targets F-box protein AT1g27340.  product MIR394A (MICRORNA394A); miRNA  transcript_id AT1G20375.1  
At1g20380	chr1:007061665	0.0	W/7061665-7061774,7062144-7062363,7062436-7062636,7062717-7062787,7062900-7063062,7063195-7063788,7063878-7064258,7064341-7064480,7064561-7064696,7064783-7064896,7064982-7065047	AT1G20380.1  CDS  gene_syn F14O10.2, F14O10_2  go_process proteolysis|GO:0006508||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function serine-type peptidase activity|GO:0008236||IEA  go_component cellular_component|GO:0005575||ND  go_process proteolysis|GO:0006508||ISS  product prolyl oligopeptidase, putative / prolyl endopeptidase, putative / post-proline cleaving enzyme, putative  note prolyl oligopeptidase, putative / prolyl endopeptidase, putative / post-proline cleaving enzyme, putative; FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase active site region (InterPro:IPR001375), Peptidase S9A, oligopeptidase, N-terminal beta-propeller (InterPro:IPR004106), Peptidase S9A, prolyl oligopeptidase (InterPro:IPR002470); BEST Arabidopsis thaliana protein match is: serine-type endopeptidase/ serine-type peptidase (TAIR:AT1G76140.1); Has 6109 Blast hits to 6064 proteins in 786 species: Archae - 52; Bacteria - 2216; Metazoa - 260; Fungi - 29; Plants - 107; Viruses - 0; Other Eukaryotes - 3445 (source: NCBI BLink).  protein_id AT1G20380.1p  transcript_id AT1G20380.1  protein_id AT1G20380.1p  transcript_id AT1G20380.1  
At1g20390	chr1:007065494	0.0	W/7065494-7071561	AT1G20390.1  mRNA_TE_gene  pseudo  gene_syn F5M15.26, F5M15_26  note Transposable element gene, gypsy-like retrotransposon family, has a 1.5e-251 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At1g20400	chr1:007075737	0.0	C/7075737-7075838,7075395-7075628,7075072-7075181,7073955-7074886,7073724-7073873,7073198-7073655,7073064-7073120,7072192-7072983	AT1G20400.1  CDS  gene_syn F5M15.25, F5M15_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product myosin heavy chain-related  note myosin heavy chain-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1204 (InterPro:IPR009596); BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT2G15420.1); Has 2135 Blast hits to 1782 proteins in 238 species: Archae - 14; Bacteria - 125; Metazoa - 886; Fungi - 161; Plants - 173; Viruses - 73; Other Eukaryotes - 703 (source: NCBI BLink).  protein_id AT1G20400.1p  transcript_id AT1G20400.1  protein_id AT1G20400.1p  transcript_id AT1G20400.1  
At1g20405	chr1:007077174	0.0	W/7077174-7077257,7077345-7077590	AT1G20405.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20680.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G20405.1p  transcript_id AT1G20405.1  protein_id AT1G20405.1p  transcript_id AT1G20405.1  
At1g20410	chr1:007082358	0.0	C/7082358-7082504,7081892-7082226,7081690-7081798,7081407-7081518,7080852-7080898,7080653-7080724,7080420-7080488,7080252-7080332,7080055-7080174,7079893-7079967,7079702-7079782,7079508-7079581,7079354-7079414,7079225-7079280,7079049-7079124	AT1G20410.1  CDS  gene_syn F5M15.23, F5M15_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 431 Blast hits to 403 proteins in 151 species: Archae - 110; Bacteria - 0; Metazoa - 110; Fungi - 3; Plants - 20; Viruses - 0; Other Eukaryotes - 188 (source: NCBI BLink).  protein_id AT1G20410.1p  transcript_id AT1G20410.1  protein_id AT1G20410.1p  transcript_id AT1G20410.1  
At1g20420	chr1:007082668	0.0	W/7082668-7082739	AT1G20420.1  tRNA  gene_syn 60115.TRNA-PRO-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G20420.1  
At1g20430	chr1:007083471	0.0	C/7083471-7083821	AT1G20430.1  CDS  gene_syn F5M15.30, F5M15_30  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 14 Blast hits to 14 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G20430.1p  transcript_id AT1G20430.1  protein_id AT1G20430.1p  transcript_id AT1G20430.1  
At1g20440	chr1:007085326	0.0	C/7085326-7085664,7084722-7085180	AT1G20440.1  CDS  gene_syn COLD-REGULATED 47, COR47, F5M15.22, F5M15_22, RD17  gene COR47  function Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. Cold regulated gene, amino acid sequence homology with Group II LEA (late embryogenesis abundant) proteins. Also responds to osmotic stress, ABA, dehydration and inhibits e.coli growth while overexpressed. COR47 and RAB18 double overexpressor plants are cold tolerant.  go_component cellular_component|GO:0005575||ND  go_process response to stress|GO:0006950||ISS  go_process response to osmotic stress|GO:0006970|11779861|IGI  go_process response to cold|GO:0009409|16258011|IEP  go_process response to cold|GO:0009409|9668134|IEP  go_process response to water deprivation|GO:0009414|11779861|IMP  go_process response to water|GO:0009415||ISS  go_process cold acclimation|GO:0009631|15356392|IGI  go_process cold acclimation|GO:0009631|1731964|ISS  go_process response to abscisic acid stimulus|GO:0009737|10205894|IMP  go_process heat acclimation|GO:0010286|16807682|IEP  go_function molecular_function|GO:0003674||ND  product COR47 (COLD-REGULATED 47)  note COLD-REGULATED 47 (COR47); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 8 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10); actin binding (TAIR:AT1G20450.2); Has 13535 Blast hits to 7773 proteins in 545 species: Archae - 38; Bacteria - 647; Metazoa - 5186; Fungi - 914; Plants - 1990; Viruses - 119; Other Eukaryotes - 4641 (source: NCBI BLink).  protein_id AT1G20440.1p  transcript_id AT1G20440.1  protein_id AT1G20440.1p  transcript_id AT1G20440.1  
At1g20450	chr1:007088768	0.0	C/7088768-7089107,7088235-7088674	AT1G20450.2  CDS  gene_syn EARLY RESPONSIVE TO DEHYDRATION 10, ER10, ERD10, F5M15.21, F5M15_21, LOW TEMPERATURE INDUCED 29, LOW TEMPERATURE INDUCED 45, LTI29, LTI45  gene ERD10  function Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm.  go_component nucleus|GO:0005634|16487487|ISS  go_component cytoplasm|GO:0005737|15356392|IDA  go_component actin cytoskeleton|GO:0015629|17010111|IDA  go_component membrane|GO:0016020|15356392|IDA  go_process response to stress|GO:0006950||ISS  go_process response to cold|GO:0009409|14535880|IEP  go_process response to cold|GO:0009409|16574749|IEP  go_process response to cold|GO:0009409|7579189|IEP  go_process response to water deprivation|GO:0009414|8069491|IEP  go_process response to water deprivation|GO:0009414|8075396|IEP  go_process response to water|GO:0009415||ISS  go_process cold acclimation|GO:0009631|15356392|IGI  go_process response to abscisic acid stimulus|GO:0009737|11292073|IEP  go_function actin binding|GO:0003779|17010111|IDA  product ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10); actin binding  note EARLY RESPONSIVE TO DEHYDRATION 10 (ERD10); FUNCTIONS IN: actin binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus, membrane, actin cytoskeleton, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: COR47 (COLD-REGULATED 47) (TAIR:AT1G20440.1); Has 6438 Blast hits to 3727 proteins in 364 species: Archae - 10; Bacteria - 259; Metazoa - 1947; Fungi - 271; Plants - 1531; Viruses - 34; Other Eukaryotes - 2386 (source: NCBI BLink).  protein_id AT1G20450.2p  transcript_id AT1G20450.2  protein_id AT1G20450.2p  transcript_id AT1G20450.2  
At1g20450	chr1:007088778	0.0	C/7088778-7089107,7088235-7088687	AT1G20450.1  CDS  gene_syn EARLY RESPONSIVE TO DEHYDRATION 10, ER10, ERD10, F5M15.21, F5M15_21, LOW TEMPERATURE INDUCED 29, LOW TEMPERATURE INDUCED 45, LTI29, LTI45  gene ERD10  function Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm.  go_component nucleus|GO:0005634|16487487|ISS  go_component cytoplasm|GO:0005737|15356392|IDA  go_component actin cytoskeleton|GO:0015629|17010111|IDA  go_component membrane|GO:0016020|15356392|IDA  go_process response to stress|GO:0006950||ISS  go_process response to cold|GO:0009409|14535880|IEP  go_process response to cold|GO:0009409|16574749|IEP  go_process response to cold|GO:0009409|7579189|IEP  go_process response to water deprivation|GO:0009414|8069491|IEP  go_process response to water deprivation|GO:0009414|8075396|IEP  go_process response to water|GO:0009415||ISS  go_process cold acclimation|GO:0009631|15356392|IGI  go_process response to abscisic acid stimulus|GO:0009737|11292073|IEP  go_function actin binding|GO:0003779|17010111|IDA  product ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10); actin binding  note EARLY RESPONSIVE TO DEHYDRATION 10 (ERD10); FUNCTIONS IN: actin binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus, membrane, actin cytoskeleton, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: COR47 (COLD-REGULATED 47) (TAIR:AT1G20440.1); Has 7819 Blast hits to 4536 proteins in 382 species: Archae - 14; Bacteria - 254; Metazoa - 2624; Fungi - 356; Plants - 1582; Viruses - 67; Other Eukaryotes - 2922 (source: NCBI BLink).  protein_id AT1G20450.1p  transcript_id AT1G20450.1  protein_id AT1G20450.1p  transcript_id AT1G20450.1  
At1g20460	chr1:007091505	0.0	W/7091505-7091617,7092786-7092993	AT1G20460.1  CDS  gene_syn F5M15.20, F5M15_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76185.1); Has 19 Blast hits to 19 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G20460.1p  transcript_id AT1G20460.1  protein_id AT1G20460.1p  transcript_id AT1G20460.1  
At1g20470	chr1:007094325	0.0	W/7094325-7094765	AT1G20470.1  CDS  gene_syn F5M15.19, F5M15_19  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT1G76190.1); Has 665 Blast hits to 653 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 664; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G20470.1p  transcript_id AT1G20470.1  protein_id AT1G20470.1p  transcript_id AT1G20470.1  
At1g20480	chr1:007095807	0.0	C/7095807-7097073,7095567-7095712,7095396-7095463,7095187-7095289,7094978-7095091	AT1G20480.1  CDS  gene_syn F5M15.29, F5M15_29  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_process phenylpropanoid metabolic process|GO:0009698||ISS  go_function 4-coumarate-CoA ligase activity|GO:0016207||ISS  product 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein  note 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein; FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: OPCL1 (OPC-8:0 COA LIGASE1); 4-coumarate-CoA ligase (TAIR:AT1G20510.1); Has 54393 Blast hits to 50143 proteins in 2280 species: Archae - 577; Bacteria - 29642; Metazoa - 3035; Fungi - 3052; Plants - 1324; Viruses - 1; Other Eukaryotes - 16762 (source: NCBI BLink).  protein_id AT1G20480.1p  transcript_id AT1G20480.1  protein_id AT1G20480.1p  transcript_id AT1G20480.1  
At1g20490	chr1:007098445	0.0	C/7098445-7099672,7097958-7098073	AT1G20490.1  CDS  gene_syn F5M15.28, F5M15_28  go_process metabolic process|GO:0008152||IEA  go_process phenylpropanoid metabolic process|GO:0009698||ISS  go_function 4-coumarate-CoA ligase activity|GO:0016207||ISS  product AMP-dependent synthetase and ligase family protein  note AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, metabolic process; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: 4-coumarate-CoA ligase (TAIR:AT1G20500.1); Has 41960 Blast hits to 39417 proteins in 2168 species: Archae - 541; Bacteria - 24826; Metazoa - 2594; Fungi - 2433; Plants - 1217; Viruses - 1; Other Eukaryotes - 10348 (source: NCBI BLink).  protein_id AT1G20490.1p  transcript_id AT1G20490.1  protein_id AT1G20490.1p  transcript_id AT1G20490.1  
At1g20500	chr1:007101626	0.0	C/7101626-7102847,7101103-7101248,7100951-7101018,7100733-7100835,7100502-7100615	AT1G20500.1  CDS  gene_syn F5M15.18, F5M15_18  go_process metabolic process|GO:0008152||IEA  go_process phenylpropanoid metabolic process|GO:0009698||ISS  go_function 4-coumarate-CoA ligase activity|GO:0016207||ISS  product 4-coumarate-CoA ligase  note 4-coumarate-CoA ligase; FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, metabolic process; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein (TAIR:AT5G38120.1); Has 36389 Blast hits to 34545 proteins in 2106 species: Archae - 511; Bacteria - 22064; Metazoa - 2186; Fungi - 1964; Plants - 1068; Viruses - 1; Other Eukaryotes - 8595 (source: NCBI BLink).  protein_id AT1G20500.1p  transcript_id AT1G20500.1  protein_id AT1G20500.1p  transcript_id AT1G20500.1  
At1g20510	chr1:007104653	0.0	C/7104653-7105856,7104419-7104564,7103939-7104010	AT1G20510.2  CDS  gene_syn F5M15.17, F5M15_17, OPC-8:0 COA LIGASE1, OPCL1  gene OPCL1  go_component peroxisome|GO:0005777|17951448|IDA  go_component peroxisome|GO:0005777|16963437|IDA  go_process response to wounding|GO:0009611|17675405|IEP  go_process jasmonic acid biosynthetic process|GO:0009695|16963437|IMP  go_process phenylpropanoid metabolic process|GO:0009698||ISS  go_function 4-coumarate-CoA ligase activity|GO:0016207||ISS  product OPCL1 (OPC-8:0 COA LIGASE1); 4-coumarate-CoA ligase  note OPC-8:0 COA LIGASE1 (OPCL1); FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, jasmonic acid biosynthetic process, response to wounding; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: 4-coumarate-CoA ligase (TAIR:AT1G20500.1); Has 53671 Blast hits to 49558 proteins in 2248 species: Archae - 587; Bacteria - 29184; Metazoa - 3033; Fungi - 3078; Plants - 1277; Viruses - 1; Other Eukaryotes - 16511 (source: NCBI BLink).  protein_id AT1G20510.2p  transcript_id AT1G20510.2  protein_id AT1G20510.2p  transcript_id AT1G20510.2  
At1g20510	chr1:007104653	0.0	C/7104653-7105856,7104419-7104564,7103943-7104010,7103645-7103867	AT1G20510.1  CDS  gene_syn F5M15.17, F5M15_17, OPC-8:0 COA LIGASE1, OPCL1  gene OPCL1  go_component peroxisome|GO:0005777|17951448|IDA  go_component peroxisome|GO:0005777|16963437|IDA  go_process response to wounding|GO:0009611|17675405|IEP  go_process jasmonic acid biosynthetic process|GO:0009695|16963437|IMP  go_process phenylpropanoid metabolic process|GO:0009698||ISS  go_function 4-coumarate-CoA ligase activity|GO:0016207||ISS  product OPCL1 (OPC-8:0 COA LIGASE1); 4-coumarate-CoA ligase  note OPC-8:0 COA LIGASE1 (OPCL1); FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, jasmonic acid biosynthetic process, response to wounding; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: 4-coumarate-CoA ligase (TAIR:AT1G20500.1); Has 55786 Blast hits to 51629 proteins in 2281 species: Archae - 597; Bacteria - 29739; Metazoa - 3091; Fungi - 3124; Plants - 1312; Viruses - 1; Other Eukaryotes - 17922 (source: NCBI BLink).  protein_id AT1G20510.1p  transcript_id AT1G20510.1  protein_id AT1G20510.1p  transcript_id AT1G20510.1  
At1g20515	chr1:007106165	0.0	W/7106165-7107977	AT1G20515.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G20520  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G20515.1  
At1g20520	chr1:007106922	0.0	C/7106922-7107617	AT1G20520.1  CDS  gene_syn F5M15.16, F5M15_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF241, plant (InterPro:IPR004320); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76210.1); Has 215 Blast hits to 211 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G20520.1p  transcript_id AT1G20520.1  protein_id AT1G20520.1p  transcript_id AT1G20520.1  
At1g20530	chr1:007109397	0.0	C/7109397-7110377,7109088-7109311,7108370-7109009	AT1G20530.1  CDS  gene_syn F5M15.15, F5M15_15  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, flower; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17110.1); Has 3064 Blast hits to 2309 proteins in 222 species: Archae - 37; Bacteria - 142; Metazoa - 1080; Fungi - 132; Plants - 334; Viruses - 0; Other Eukaryotes - 1339 (source: NCBI BLink).  protein_id AT1G20530.1p  transcript_id AT1G20530.1  protein_id AT1G20530.1p  transcript_id AT1G20530.1  
At1g20540	chr1:007112652	0.0	W/7112652-7112696,7112772-7112855,7112955-7113087,7113195-7113306,7113439-7113538,7113645-7113772,7113952-7114021,7114225-7114313,7114416-7114461,7114672-7114745,7114835-7114908,7114990-7115048,7115150-7115191	AT1G20540.1  CDS  gene_syn F5M15.14, F5M15_14  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT1G76260.1); Has 6759 Blast hits to 5575 proteins in 300 species: Archae - 0; Bacteria - 624; Metazoa - 3227; Fungi - 1427; Plants - 781; Viruses - 0; Other Eukaryotes - 700 (source: NCBI BLink).  protein_id AT1G20540.1p  transcript_id AT1G20540.1  protein_id AT1G20540.1p  transcript_id AT1G20540.1  
At1g20550	chr1:007117787	0.0	C/7117787-7117936,7117638-7117700,7117461-7117551,7117266-7117342,7117084-7117172,7116817-7117000,7116631-7116698,7116414-7116516,7116009-7116340,7115485-7115908	AT1G20550.1  CDS  gene_syn F5M15.13  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76270.1); Has 458 Blast hits to 423 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 458; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G20550.1p  transcript_id AT1G20550.1  protein_id AT1G20550.1p  transcript_id AT1G20550.1  
At1g20560	chr1:007119927	0.0	C/7119927-7121363	AT1G20560.2  CDS  gene_syn AAE1, ACYL ACTIVATING ENZYME 1, F5M15.12, F5M15_12  gene AAE1  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function AMP binding|GO:0016208||ISS  product AAE1 (ACYL ACTIVATING ENZYME 1); AMP binding  note ACYL ACTIVATING ENZYME 1 (AAE1); FUNCTIONS IN: AMP binding; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT2G17650.1); Has 47809 Blast hits to 44625 proteins in 2200 species: Archae - 540; Bacteria - 27059; Metazoa - 2707; Fungi - 2173; Plants - 1217; Viruses - 1; Other Eukaryotes - 14112 (source: NCBI BLink).  protein_id AT1G20560.2p  transcript_id AT1G20560.2  protein_id AT1G20560.2p  transcript_id AT1G20560.2  
At1g20560	chr1:007121527	0.0	C/7121527-7121730,7119927-7121393	AT1G20560.1  CDS  gene_syn AAE1, ACYL ACTIVATING ENZYME 1, F5M15.12, F5M15_12  gene AAE1  go_process metabolic process|GO:0008152||IEA  go_function AMP binding|GO:0016208||ISS  product AAE1 (ACYL ACTIVATING ENZYME 1); AMP binding  note ACYL ACTIVATING ENZYME 1 (AAE1); FUNCTIONS IN: AMP binding; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT2G17650.1); Has 51225 Blast hits to 47390 proteins in 2212 species: Archae - 568; Bacteria - 27901; Metazoa - 2931; Fungi - 2228; Plants - 1263; Viruses - 1; Other Eukaryotes - 16333 (source: NCBI BLink).  protein_id AT1G20560.1p  transcript_id AT1G20560.1  protein_id AT1G20560.1p  transcript_id AT1G20560.1  
At1g20570	chr1:007126428	0.0	C/7126428-7126559,7126085-7126349,7125896-7125983,7125626-7125797,7125433-7125543,7124283-7125266,7124029-7124181,7123845-7123944,7123674-7123768,7123312-7123506,7123154-7123210,7123005-7123055,7122736-7122834,7122474-7122605,7122219-7122392,7122018-7122140	AT1G20570.1  CDS  gene_syn F5M15.11  go_component spindle pole|GO:0000922||IEA  go_component microtubule organizing center|GO:0005815||IEA  go_process microtubule cytoskeleton organization|GO:0000226||IEA  go_function tubulin binding|GO:0015631||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product tubulin family protein  note tubulin family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, tubulin binding; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: spindle pole, microtubule organizing center; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: emb1427 (embryo defective 1427); tubulin binding (TAIR:AT1G80260.1); Has 759 Blast hits to 684 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 498; Fungi - 112; Plants - 84; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT1G20570.1p  transcript_id AT1G20570.1  protein_id AT1G20570.1p  transcript_id AT1G20570.1  
At1g20575	chr1:007128559	0.0	C/7128559-7128677,7128034-7128133,7127906-7127939,7127748-7127824,7127646-7127671,7127391-7127555,7127189-7127303,7126987-7127091	AT1G20575.1  CDS  go_component endoplasmic reticulum|GO:0005783||ISS  go_process protein amino acid glycosylation|GO:0006486||ISS  go_function dolichyl-phosphate beta-D-mannosyltransferase activity|GO:0004582||ISS  go_function elongation factor-2 kinase activity|GO:0004686||ISS  product dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putative  note dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putative; FUNCTIONS IN: elongation factor-2 kinase activity, dolichyl-phosphate beta-D-mannosyltransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: glycosyl transferase family 2 protein (TAIR:AT2G39630.1); Has 14265 Blast hits to 14249 proteins in 1426 species: Archae - 553; Bacteria - 8256; Metazoa - 255; Fungi - 173; Plants - 49; Viruses - 21; Other Eukaryotes - 4958 (source: NCBI BLink).  protein_id AT1G20575.1p  transcript_id AT1G20575.1  protein_id AT1G20575.1p  transcript_id AT1G20575.1  
At1g20580	chr1:007128979	0.0	W/7128979-7129137,7129779-7129831,7129925-7129991,7130088-7130141,7130309-7130371	AT1G20580.1  CDS  gene_syn F5M15.9, F5M15_9  go_component nucleolus|GO:0005730|15496452|IDA  go_component nucleus|GO:0005634||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_function molecular_function|GO:0003674||ND  product small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative  note small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus, small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: SmD3 (snRNP core protein SmD3) (TAIR:AT1G76300.1); Has 893 Blast hits to 893 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 391; Fungi - 219; Plants - 128; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink).  protein_id AT1G20580.1p  transcript_id AT1G20580.1  protein_id AT1G20580.1p  transcript_id AT1G20580.1  
At1g20590	chr1:007132179	0.0	C/7132179-7132183,7131878-7132037,7131693-7131791,7131416-7131594,7131166-7131322	AT1G20590.1  CDS  gene_syn F5M15.8, F5M15_8  go_component nucleus|GO:0005634||IEA  go_component endomembrane system|GO:0012505||IEA  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase regulator activity|GO:0016538||ISS  product cyclin, putative  note cyclin, putative; FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCB2;3 (Cyclin B2;3); cyclin-dependent protein kinase regulator (TAIR:AT1G20610.1); Has 2619 Blast hits to 2616 proteins in 252 species: Archae - 0; Bacteria - 0; Metazoa - 1427; Fungi - 321; Plants - 539; Viruses - 0; Other Eukaryotes - 332 (source: NCBI BLink).  protein_id AT1G20590.1p  transcript_id AT1G20590.1  protein_id AT1G20590.1p  transcript_id AT1G20590.1  
At1g20600	chr1:007133111	0.0	W/7133111-7133752,7134166-7134237	AT1G20600.1  CDS  gene_syn F5M15.7, F5M15_7  go_component membrane|GO:0016020|17432890|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  product DNA-binding protein-related  note DNA-binding protein-related; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT4G03170.1); Has 48 Blast hits to 48 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G20600.1p  transcript_id AT1G20600.1  protein_id AT1G20600.1p  transcript_id AT1G20600.1  
At1g20610	chr1:007137219	0.0	C/7137219-7137273,7136993-7137125,7136843-7136890,7136710-7136758,7136481-7136627,7136264-7136398,7136063-7136152,7135751-7135972,7135566-7135664,7135289-7135467,7135073-7135205	AT1G20610.1  CDS  gene_syn CYCB2;3, Cyclin B2;3, F5M15.6  gene CYCB2;3  go_component nucleus|GO:0005634||IEA  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase regulator activity|GO:0016538||ISS  product CYCB2;3 (Cyclin B2;3); cyclin-dependent protein kinase regulator  note Cyclin B2;3 (CYCB2;3); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCB2;4 (CYCLIN B2;4); cyclin-dependent protein kinase regulator (TAIR:AT1G76310.1); Has 3436 Blast hits to 3428 proteins in 298 species: Archae - 0; Bacteria - 4; Metazoa - 1781; Fungi - 373; Plants - 749; Viruses - 30; Other Eukaryotes - 499 (source: NCBI BLink).  protein_id AT1G20610.1p  transcript_id AT1G20610.1  protein_id AT1G20610.1p  transcript_id AT1G20610.1  
At1g20620	chr1:007143142	0.0	W/7143142-7143156,7144207-7144303,7144459-7144736,7144829-7145605,7145691-7145780,7145880-7146041,7146134-7146193	AT1G20620.1  CDS  gene_syn CAT3, CATALASE 3, F5M15.5, F5M15_5, SEN2, SENESCENCE 2  gene CAT3  function Catalase, catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen.  go_component cell wall|GO:0005618|16287169|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component peroxisome|GO:0005777|12154131|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component mitochondrion|GO:0005739|14671022|IDA  go_component peroxisome|GO:0005777|8819328|TAS  go_process cellular response to nitrogen starvation|GO:0006995|15032878|IEP  go_process response to cold|GO:0009409|18230142|IEP  go_process response to light stimulus|GO:0009416|18230142|IEP  go_process cellular response to sulfate starvation|GO:0009970|15032878|IEP  go_process cellular response to phosphate starvation|GO:0016036|15032878|IEP  go_process hydrogen peroxide catabolic process|GO:0042744|8819328|TAS  go_function catalase activity|GO:0004096|8819328|ISS  go_function catalase activity|GO:0004096||ISS  product CAT3 (CATALASE 3); catalase  note CATALASE 3 (CAT3); FUNCTIONS IN: catalase activity; INVOLVED IN: in 7 processes; LOCATED IN: in 11 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Catalase (InterPro:IPR002226), Catalase related subgroup (InterPro:IPR018028), Catalase, N-terminal (InterPro:IPR011614), Catalase-related immune responsive (InterPro:IPR010582); BEST Arabidopsis thaliana protein match is: CAT2 (CATALASE 2); catalase (TAIR:AT4G35090.1); Has 3566 Blast hits to 3556 proteins in 1073 species: Archae - 17; Bacteria - 2349; Metazoa - 389; Fungi - 355; Plants - 348; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT1G20620.1p  transcript_id AT1G20620.1  protein_id AT1G20620.1p  transcript_id AT1G20620.1  
At1g20620	chr1:007143142	0.0	W/7143142-7143156,7144207-7144303,7144459-7144736,7144829-7145605,7145691-7145780,7145880-7146041,7146155-7146193	AT1G20620.5  CDS  gene_syn CAT3, CATALASE 3, F5M15.5, F5M15_5, SEN2, SENESCENCE 2  gene CAT3  function Catalase, catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen.  go_component cell wall|GO:0005618|16287169|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component peroxisome|GO:0005777|12154131|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component mitochondrion|GO:0005739|14671022|IDA  go_component peroxisome|GO:0005777|8819328|TAS  go_process cellular response to nitrogen starvation|GO:0006995|15032878|IEP  go_process response to cold|GO:0009409|18230142|IEP  go_process response to light stimulus|GO:0009416|18230142|IEP  go_process cellular response to sulfate starvation|GO:0009970|15032878|IEP  go_process cellular response to phosphate starvation|GO:0016036|15032878|IEP  go_process hydrogen peroxide catabolic process|GO:0042744|8819328|TAS  go_function catalase activity|GO:0004096|8819328|ISS  go_function catalase activity|GO:0004096||ISS  product CAT3 (CATALASE 3); catalase  note CATALASE 3 (CAT3); FUNCTIONS IN: catalase activity; INVOLVED IN: in 7 processes; LOCATED IN: in 9 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Catalase related subgroup (InterPro:IPR018028), Catalase (InterPro:IPR002226), Catalase, N-terminal (InterPro:IPR011614), Catalase-related immune responsive (InterPro:IPR010582); BEST Arabidopsis thaliana protein match is: CAT2 (CATALASE 2); catalase (TAIR:AT4G35090.1); Has 3565 Blast hits to 3555 proteins in 1073 species: Archae - 17; Bacteria - 2349; Metazoa - 389; Fungi - 355; Plants - 347; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT1G20620.5p  transcript_id AT1G20620.5  protein_id AT1G20620.5p  transcript_id AT1G20620.5  
At1g20620	chr1:007143142	0.0	W/7143142-7143156,7144207-7144303,7144459-7144736,7144829-7145605,7145691-7145807	AT1G20620.2  CDS  gene_syn CAT3, CATALASE 3, F5M15.5, F5M15_5, SEN2, SENESCENCE 2  gene CAT3  function Catalase, catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen.  go_component cell wall|GO:0005618|16287169|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component peroxisome|GO:0005777|12154131|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component mitochondrion|GO:0005739|14671022|IDA  go_component peroxisome|GO:0005777|8819328|TAS  go_process cellular response to nitrogen starvation|GO:0006995|15032878|IEP  go_process response to cold|GO:0009409|18230142|IEP  go_process response to light stimulus|GO:0009416|18230142|IEP  go_process cellular response to sulfate starvation|GO:0009970|15032878|IEP  go_process cellular response to phosphate starvation|GO:0016036|15032878|IEP  go_process hydrogen peroxide catabolic process|GO:0042744|8819328|TAS  go_function catalase activity|GO:0004096|8819328|ISS  go_function catalase activity|GO:0004096||ISS  product CAT3 (CATALASE 3); catalase  note CATALASE 3 (CAT3); FUNCTIONS IN: catalase activity; INVOLVED IN: in 7 processes; LOCATED IN: in 9 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Catalase related subgroup (InterPro:IPR018028), Catalase (InterPro:IPR002226), Catalase, N-terminal (InterPro:IPR011614); BEST Arabidopsis thaliana protein match is: CAT2 (CATALASE 2); catalase (TAIR:AT4G35090.2); Has 3560 Blast hits to 3550 proteins in 1072 species: Archae - 17; Bacteria - 2349; Metazoa - 389; Fungi - 355; Plants - 342; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT1G20620.2p  transcript_id AT1G20620.2  protein_id AT1G20620.2p  transcript_id AT1G20620.2  
At1g20620	chr1:007144692	0.0	W/7144692-7144736,7144829-7145605,7145691-7145780,7145880-7146041,7146134-7146193	AT1G20620.4  CDS  gene_syn CAT3, CATALASE 3, F5M15.5, F5M15_5, SEN2, SENESCENCE 2  gene CAT3  function Catalase, catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen.  go_component cell wall|GO:0005618|16287169|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component peroxisome|GO:0005777|12154131|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component mitochondrion|GO:0005739|14671022|IDA  go_component peroxisome|GO:0005777|8819328|TAS  go_process cellular response to nitrogen starvation|GO:0006995|15032878|IEP  go_process response to cold|GO:0009409|18230142|IEP  go_process response to light stimulus|GO:0009416|18230142|IEP  go_process cellular response to sulfate starvation|GO:0009970|15032878|IEP  go_process cellular response to phosphate starvation|GO:0016036|15032878|IEP  go_process hydrogen peroxide catabolic process|GO:0042744|8819328|TAS  go_function catalase activity|GO:0004096|8819328|ISS  go_function catalase activity|GO:0004096||ISS  product CAT3 (CATALASE 3); catalase  note CATALASE 3 (CAT3); FUNCTIONS IN: catalase activity; INVOLVED IN: in 7 processes; LOCATED IN: in 9 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Catalase related subgroup (InterPro:IPR018028), Catalase (InterPro:IPR002226), Catalase, N-terminal (InterPro:IPR011614), Catalase-related immune responsive (InterPro:IPR010582); BEST Arabidopsis thaliana protein match is: CAT1 (CATALASE 1); catalase (TAIR:AT1G20630.1); Has 3489 Blast hits to 3483 proteins in 1063 species: Archae - 17; Bacteria - 2293; Metazoa - 380; Fungi - 354; Plants - 344; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT1G20620.4p  transcript_id AT1G20620.4  protein_id AT1G20620.4p  transcript_id AT1G20620.4  
At1g20630	chr1:007146812	0.0	W/7146812-7146826,7147413-7147509,7147783-7148060,7148239-7149015,7149106-7149195,7149286-7149353,7149456-7149609	AT1G20630.1  CDS  gene_syn CAT1, CATALASE 1, F5M15.31, F5M15_31  gene CAT1  function Catalyzes the reduction of hydrogen peroxide using heme group as cofactor. Protects cells from toxicity by H2O2.  go_component cell wall|GO:0005618|16287169|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component mitochondrion|GO:0005739|14671022|IDA  go_component peroxisome|GO:0005777|12943550|TAS  go_process cellular response to nitrogen starvation|GO:0006995|15032878|IEP  go_process response to light stimulus|GO:0009416|15608336|IEP  go_process response to light stimulus|GO:0009416|9214587|IEP  go_process response to abscisic acid stimulus|GO:0009737|18248592|IEP  go_process cellular response to sulfate starvation|GO:0009970|15032878|IEP  go_process cellular response to phosphate starvation|GO:0016036|15032878|IEP  go_process response to hydrogen peroxide|GO:0042542|18248592|IEP  go_function catalase activity|GO:0004096|9214587|ISS  go_function catalase activity|GO:0004096||ISS  product CAT1 (CATALASE 1); catalase  note CATALASE 1 (CAT1); FUNCTIONS IN: catalase activity; INVOLVED IN: in 7 processes; LOCATED IN: mitochondrion, cytosolic ribosome, cell wall, peroxisome, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Catalase (InterPro:IPR002226), Catalase related subgroup (InterPro:IPR018028), Catalase, N-terminal (InterPro:IPR011614), Catalase-related immune responsive (InterPro:IPR010582); BEST Arabidopsis thaliana protein match is: CAT2 (CATALASE 2); catalase (TAIR:AT4G35090.1); Has 3550 Blast hits to 3540 proteins in 1069 species: Archae - 17; Bacteria - 2337; Metazoa - 389; Fungi - 355; Plants - 348; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT1G20630.1p  transcript_id AT1G20630.1  protein_id AT1G20630.1p  transcript_id AT1G20630.1  
At1g20640	chr1:007155201	0.0	W/7155201-7155980,7156062-7156109,7156184-7157096,7157193-7157986	AT1G20640.1  CDS  gene_syn F5M15.4  go_process nodulation|GO:0009877||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product RWP-RK domain-containing protein  note RWP-RK domain-containing protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: nodulation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: RWP-RK domain-containing protein (TAIR:AT1G76350.1); Has 329 Blast hits to 276 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 311; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G20640.1p  transcript_id AT1G20640.1  protein_id AT1G20640.1p  transcript_id AT1G20640.1  
At1g20640	chr1:007155201	0.0	W/7155201-7155980,7156062-7156109,7156184-7157096,7157193-7157986	AT1G20640.2  CDS  gene_syn F5M15.4  go_process nodulation|GO:0009877||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product RWP-RK domain-containing protein  note RWP-RK domain-containing protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: nodulation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: RWP-RK domain-containing protein (TAIR:AT1G76350.1); Has 329 Blast hits to 276 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 311; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G20640.2p  transcript_id AT1G20640.2  protein_id AT1G20640.2p  transcript_id AT1G20640.2  
At1g20650	chr1:007159923	0.0	C/7159923-7160022,7159785-7159832,7159540-7159694,7159257-7159446,7158765-7159156,7158422-7158682	AT1G20650.1  CDS  gene_syn F5M15.3  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function protein kinase activity|GO:0004672||ISS  product ATP binding / protein kinase/ protein serine/threonine kinase  note ATP binding / protein kinase/ protein serine/threonine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT1G76370.1); Has 83142 Blast hits to 82041 proteins in 2963 species: Archae - 50; Bacteria - 7598; Metazoa - 36682; Fungi - 6438; Plants - 18478; Viruses - 356; Other Eukaryotes - 13540 (source: NCBI BLink).  protein_id AT1G20650.1p  transcript_id AT1G20650.1  protein_id AT1G20650.1p  transcript_id AT1G20650.1  
At1g20657	chr1:007161890	0.0	C/7161890-7163076	AT1G20657.1  pseudogenic_transcript  pseudo  function Pseudogene of AT3G61340; F-box family protein  
At1g20670	chr1:007167484	0.0	C/7167484-7167933,7166956-7166992,7166751-7166829,7166604-7166649,7166425-7166523,7165963-7166031,7165530-7165878,7165292-7165440,7164537-7165217	AT1G20670.1  CDS  gene_syn F2D10.15, F2D10_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product DNA-binding bromodomain-containing protein  note DNA-binding bromodomain-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain, conserved site (InterPro:IPR018359), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT1G76380.2); Has 9864 Blast hits to 6994 proteins in 241 species: Archae - 0; Bacteria - 93; Metazoa - 3979; Fungi - 1018; Plants - 350; Viruses - 7; Other Eukaryotes - 4417 (source: NCBI BLink).  protein_id AT1G20670.1p  transcript_id AT1G20670.1  protein_id AT1G20670.1p  transcript_id AT1G20670.1  
At1g20680	chr1:007168311	0.0	W/7168311-7168357,7169576-7169762,7169846-7170070,7170209-7170367,7170450-7170583,7172041-7172121,7172547-7172592,7173009-7173134,7173224-7173340	AT1G20680.1  CDS  gene_syn F2D10.17, F2D10_17  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF833 (InterPro:IPR008551); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20740.1); Has 68 Blast hits to 66 proteins in 15 species: Archae - 0; Bacteria - 11; Metazoa - 2; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT1G20680.1p  transcript_id AT1G20680.1  protein_id AT1G20680.1p  transcript_id AT1G20680.1  
At1g20690	chr1:007175086	0.0	W/7175086-7175808	AT1G20690.1  CDS  gene_syn F2D10.18, F2D10_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G20940.1); Has 30 Blast hits to 28 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G20690.1p  transcript_id AT1G20690.1  protein_id AT1G20690.1p  transcript_id AT1G20690.1  
At1g20693	chr1:007177282	0.0	W/7177282-7177322,7177418-7177522,7177798-7177855,7177960-7178004,7178120-7178200,7178290-7178376,7178470-7178487	AT1G20693.1  CDS  gene_syn HIGH MOBILITY GROUP B 2, HIGH MOBILITY GROUP BETA 1, HMG BETA 1, HMGB2, NFD02, NFD2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2  gene HMGB2  function Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha.  go_component chromatin|GO:0000785|12653554|TAS  go_process chromatin assembly or disassembly|GO:0006333|12653554|TAS  go_function DNA binding|GO:0003677|9461286|IDA  go_function DNA binding|GO:0003677|9461286|ISS  go_function chromatin binding|GO:0003682|12653554|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function structural constituent of chromatin|GO:0030527|12653554|TAS  product HMGB2 (HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor  note HIGH MOBILITY GROUP B 2 (HMGB2); FUNCTIONS IN: chromatin binding, transcription factor activity, structural constituent of chromatin, DNA binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910), High mobility group, HMG1/HMG2, subgroup (InterPro:IPR000135); BEST Arabidopsis thaliana protein match is: HMGB3 (HIGH MOBILITY GROUP B 3); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor (TAIR:AT1G20696.3); Has 5911 Blast hits to 5186 proteins in 605 species: Archae - 2; Bacteria - 3; Metazoa - 4590; Fungi - 369; Plants - 388; Viruses - 9; Other Eukaryotes - 550 (source: NCBI BLink).  protein_id AT1G20693.1p  transcript_id AT1G20693.1  protein_id AT1G20693.1p  transcript_id AT1G20693.1  
At1g20693	chr1:007177282	0.0	W/7177282-7177322,7177418-7177522,7177798-7177855,7177960-7178004,7178120-7178200,7178290-7178376,7178473-7178487	AT1G20693.3  CDS  gene_syn HIGH MOBILITY GROUP B 2, HIGH MOBILITY GROUP BETA 1, HMG BETA 1, HMGB2, NFD02, NFD2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2  gene HMGB2  function Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha.  go_component chromatin|GO:0000785|12653554|TAS  go_process chromatin assembly or disassembly|GO:0006333|12653554|TAS  go_function DNA binding|GO:0003677|9461286|IDA  go_function DNA binding|GO:0003677|9461286|ISS  go_function chromatin binding|GO:0003682|12653554|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function structural constituent of chromatin|GO:0030527|12653554|TAS  product HMGB2 (HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor  note HIGH MOBILITY GROUP B 2 (HMGB2); FUNCTIONS IN: chromatin binding, transcription factor activity, structural constituent of chromatin, DNA binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910), High mobility group, HMG1/HMG2, subgroup (InterPro:IPR000135); BEST Arabidopsis thaliana protein match is: HMGB3 (HIGH MOBILITY GROUP B 3); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor (TAIR:AT1G20696.3); Has 5805 Blast hits to 5093 proteins in 603 species: Archae - 0; Bacteria - 3; Metazoa - 4560; Fungi - 355; Plants - 366; Viruses - 7; Other Eukaryotes - 514 (source: NCBI BLink).  protein_id AT1G20693.3p  transcript_id AT1G20693.3  protein_id AT1G20693.3p  transcript_id AT1G20693.3  
At1g20693	chr1:007177282	0.0	W/7177282-7177322,7177418-7177522,7177798-7177855,7177960-7178004,7178120-7178200,7178290-7178376,7178476-7178487	AT1G20693.2  CDS  gene_syn HIGH MOBILITY GROUP B 2, HIGH MOBILITY GROUP BETA 1, HMG BETA 1, HMGB2, NFD02, NFD2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2  gene HMGB2  function Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha.  go_component chromatin|GO:0000785|12653554|TAS  go_process chromatin assembly or disassembly|GO:0006333|12653554|TAS  go_function DNA binding|GO:0003677|9461286|IDA  go_function DNA binding|GO:0003677|9461286|ISS  go_function chromatin binding|GO:0003682|12653554|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function structural constituent of chromatin|GO:0030527|12653554|TAS  product HMGB2 (HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor  note HIGH MOBILITY GROUP B 2 (HMGB2); FUNCTIONS IN: chromatin binding, transcription factor activity, structural constituent of chromatin, DNA binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910), High mobility group, HMG1/HMG2, subgroup (InterPro:IPR000135); BEST Arabidopsis thaliana protein match is: HMGB3 (HIGH MOBILITY GROUP B 3); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor (TAIR:AT1G20696.3); Has 5714 Blast hits to 5014 proteins in 603 species: Archae - 0; Bacteria - 3; Metazoa - 4523; Fungi - 341; Plants - 357; Viruses - 7; Other Eukaryotes - 483 (source: NCBI BLink).  protein_id AT1G20693.2p  transcript_id AT1G20693.2  protein_id AT1G20693.2p  transcript_id AT1G20693.2  
At1g20696	chr1:007179825	0.0	W/7179825-7179865,7179999-7180094,7180368-7180425,7180537-7180581,7180674-7180754,7180983-7181069,7181157-7181174	AT1G20696.1  CDS  gene_syn HIGH MOBILITY GROUP B 3, HMGB3, NFD03, NFD3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR  gene HMGB3  function Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha.  go_component chromatin|GO:0000785|12653554|TAS  go_process chromatin assembly or disassembly|GO:0006333|12653554|TAS  go_function DNA binding|GO:0003677|9461286|IDA  go_function DNA binding|GO:0003677|9461286|ISS  go_function chromatin binding|GO:0003682|12653554|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function structural constituent of chromatin|GO:0030527|12653554|TAS  product HMGB3 (HIGH MOBILITY GROUP B 3); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor  note HIGH MOBILITY GROUP B 3 (HMGB3); FUNCTIONS IN: chromatin binding, transcription factor activity, structural constituent of chromatin, DNA binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: HMGB2 (HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor (TAIR:AT1G20693.3); Has 4841 Blast hits to 4168 proteins in 434 species: Archae - 0; Bacteria - 0; Metazoa - 3716; Fungi - 308; Plants - 361; Viruses - 4; Other Eukaryotes - 452 (source: NCBI BLink).  protein_id AT1G20696.1p  transcript_id AT1G20696.1  protein_id AT1G20696.1p  transcript_id AT1G20696.1  
At1g20696	chr1:007179825	0.0	W/7179825-7179865,7179999-7180094,7180368-7180425,7180537-7180581,7180674-7180754,7180983-7181073,7181160-7181170	AT1G20696.3  CDS  gene_syn HIGH MOBILITY GROUP B 3, HMGB3, NFD03, NFD3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR  gene HMGB3  function Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha.  go_component chromatin|GO:0000785|12653554|TAS  go_process chromatin assembly or disassembly|GO:0006333|12653554|TAS  go_function DNA binding|GO:0003677|9461286|IDA  go_function DNA binding|GO:0003677|9461286|ISS  go_function chromatin binding|GO:0003682|12653554|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function structural constituent of chromatin|GO:0030527|12653554|TAS  product HMGB3 (HIGH MOBILITY GROUP B 3); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor  note HIGH MOBILITY GROUP B 3 (HMGB3); FUNCTIONS IN: chromatin binding, transcription factor activity, structural constituent of chromatin, DNA binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: HMGB2 (HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor (TAIR:AT1G20693.3); Has 4640 Blast hits to 3977 proteins in 429 species: Archae - 0; Bacteria - 0; Metazoa - 3618; Fungi - 279; Plants - 344; Viruses - 0; Other Eukaryotes - 399 (source: NCBI BLink).  protein_id AT1G20696.3p  transcript_id AT1G20696.3  protein_id AT1G20696.3p  transcript_id AT1G20696.3  
At1g20696	chr1:007179825	0.0	W/7179825-7179865,7179999-7180094,7180368-7180425,7180537-7180581,7180674-7180760,7180990-7181069,7181157-7181193	AT1G20696.2  CDS  gene_syn HIGH MOBILITY GROUP B 3, HMGB3, NFD03, NFD3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR  gene HMGB3  function Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha.  go_component chromatin|GO:0000785|12653554|TAS  go_process chromatin assembly or disassembly|GO:0006333|12653554|TAS  go_function DNA binding|GO:0003677|9461286|IDA  go_function DNA binding|GO:0003677|9461286|ISS  go_function chromatin binding|GO:0003682|12653554|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function structural constituent of chromatin|GO:0030527|12653554|TAS  product HMGB3 (HIGH MOBILITY GROUP B 3); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor  note HIGH MOBILITY GROUP B 3 (HMGB3); FUNCTIONS IN: chromatin binding, transcription factor activity, structural constituent of chromatin, DNA binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: HMGB2 (HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor (TAIR:AT1G20693.3); Has 4188 Blast hits to 3563 proteins in 392 species: Archae - 0; Bacteria - 0; Metazoa - 3265; Fungi - 252; Plants - 323; Viruses - 0; Other Eukaryotes - 348 (source: NCBI BLink).  protein_id AT1G20696.2p  transcript_id AT1G20696.2  protein_id AT1G20696.2p  transcript_id AT1G20696.2  
At1g20700	chr1:007182558	0.0	W/7182558-7182762,7183349-7183735,7183823-7183866	AT1G20700.1  CDS  gene_syn ATWOX14, F2D10.19, F2D10_19, WOX14, WUSCHEL RELATED HOMEOBOX 14  gene WOX14  function Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. Functions in the shoot meristem organizing center to maintain the stem cells in an undifferentiated state.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process primary shoot apical meristem specification|GO:0010072|18653559|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product WOX14 (WUSCHEL RELATED HOMEOBOX 14); DNA binding / transcription factor  note WUSCHEL RELATED HOMEOBOX 14 (WOX14); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: primary shoot apical meristem specification, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: WOX10 (WUSCHEL related homeobox 10); DNA binding / transcription factor (TAIR:AT1G20710.1); Has 382 Blast hits to 382 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 4; Plants - 290; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G20700.1p  transcript_id AT1G20700.1  protein_id AT1G20700.1p  transcript_id AT1G20700.1  
At1g20710	chr1:007184485	0.0	W/7184485-7184641,7184733-7185128,7185227-7185267	AT1G20710.1  CDS  gene_syn F2D10.20, F2D10_20, WOX10, WUSCHEL related homeobox 10  gene WOX10  function Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product WOX10 (WUSCHEL related homeobox 10); DNA binding / transcription factor  note WUSCHEL related homeobox 10 (WOX10); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: WOX14 (WUSCHEL RELATED HOMEOBOX 14); DNA binding / transcription factor (TAIR:AT1G20700.1); Has 398 Blast hits to 398 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 84; Fungi - 4; Plants - 308; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G20710.1p  transcript_id AT1G20710.1  protein_id AT1G20710.1p  transcript_id AT1G20710.1  
At1g20720	chr1:007192413	0.0	C/7192413-7192794,7192256-7192337,7192088-7192163,7191924-7191988,7191792-7191839,7191600-7191700,7191380-7191521,7191191-7191252,7191031-7191104,7190880-7190950,7190403-7190490,7190241-7190319,7190063-7190152,7189855-7189963,7189418-7189511,7189260-7189343,7188986-7189142,7188720-7188901,7188499-7188543,7188366-7188394,7188159-7188280,7188018-7188065,7187802-7187926,7187594-7187728,7187302-7187507,7186715-7187121,7186248-7186432,7186069-7186140,7185782-7185904,7185658-7185702	AT1G20720.1  CDS  gene_syn F2D10.21, F2D10_21  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function ATP-dependent DNA helicase activity|GO:0004003||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides|GO:0016818||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  product ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding  note ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding; FUNCTIONS IN: in 6 functions; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: DEAD2 (InterPro:IPR010614), Helicase, superfamily 1 and 2, ATP-binding, DinG/Rad3-type (InterPro:IPR014013), Helicase-like, DEXD box c2 type (InterPro:IPR006554), DNA helicase (DNA repair), Rad3 type (InterPro:IPR013020), Helicase, ATP-dependent, c2 type (InterPro:IPR006555); BEST Arabidopsis thaliana protein match is: helicase-related (TAIR:AT1G20750.1); Has 1851 Blast hits to 1472 proteins in 375 species: Archae - 118; Bacteria - 290; Metazoa - 614; Fungi - 296; Plants - 93; Viruses - 3; Other Eukaryotes - 437 (source: NCBI BLink).  protein_id AT1G20720.1p  transcript_id AT1G20720.1  protein_id AT1G20720.1p  transcript_id AT1G20720.1  
At1g20730	chr1:007194276	0.0	W/7194276-7194364,7194425-7194608,7194684-7194905,7195009-7195155,7195263-7195387,7196612-7196649,7197783-7198681	AT1G20730.1  CDS  gene_syn F2D10.22, F2D10_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF833 (InterPro:IPR008551), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20740.1); Has 303 Blast hits to 300 proteins in 118 species: Archae - 0; Bacteria - 180; Metazoa - 8; Fungi - 0; Plants - 63; Viruses - 2; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT1G20730.1p  transcript_id AT1G20730.1  protein_id AT1G20730.1p  transcript_id AT1G20730.1  
At1g20740	chr1:007200394	0.0	W/7200394-7200457,7200502-7200728,7200807-7201031,7201146-7201289,7201398-7201538	AT1G20740.1  CDS  gene_syn F2D10.23, F2D10_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF833 (InterPro:IPR008551); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20730.1); Has 224 Blast hits to 224 proteins in 100 species: Archae - 0; Bacteria - 149; Metazoa - 11; Fungi - 2; Plants - 31; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT1G20740.1p  transcript_id AT1G20740.1  protein_id AT1G20740.1p  transcript_id AT1G20740.1  
At1g20750	chr1:007208674	0.0	C/7208674-7208998,7208516-7208579,7208349-7208424,7208185-7208249,7208049-7208096,7207857-7207957,7207653-7207788,7207511-7207572,7207366-7207439,7207208-7207278,7207033-7207120,7206871-7206949,7206690-7206779,7206513-7206615,7206333-7206426,7206177-7206260,7205919-7206075,7205655-7205836,7205497-7205541,7205357-7205385,7205112-7205281,7204927-7205060,7204628-7204848,7203714-7204530,7203562-7203633,7203302-7203454	AT1G20750.1  CDS  gene_syn F2D10.24, F2D10_24  go_component chloroplast|GO:0009507|15028209|IDA  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function ATP-dependent DNA helicase activity|GO:0004003||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides|GO:0016818||IEA  product helicase-related  note helicase-related; FUNCTIONS IN: in 6 functions; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: DEAD2 (InterPro:IPR010614), Helicase, superfamily 1 and 2, ATP-binding, DinG/Rad3-type (InterPro:IPR014013), DNA helicase (DNA repair), Rad3 type (InterPro:IPR013020), Helicase-like, DEXD box c2 type (InterPro:IPR006554), Helicase, ATP-dependent, c2 type (InterPro:IPR006555); BEST Arabidopsis thaliana protein match is: ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding (TAIR:AT1G20720.1); Has 1796 Blast hits to 1318 proteins in 305 species: Archae - 89; Bacteria - 170; Metazoa - 677; Fungi - 309; Plants - 92; Viruses - 0; Other Eukaryotes - 459 (source: NCBI BLink).  protein_id AT1G20750.1p  transcript_id AT1G20750.1  protein_id AT1G20750.1p  transcript_id AT1G20750.1  
At1g20760	chr1:007209515	0.0	W/7209515-7209655,7210007-7211048,7211328-7211546,7211632-7211849,7211938-7212012,7212494-7212565,7212644-7212742,7213030-7213101,7213192-7213306,7213419-7213487,7213586-7213944,7214195-7214773	AT1G20760.1  CDS  gene_syn F2D10.25, F2D10_25  go_component plasma membrane|GO:0005886|17317660|IDA  go_function calcium ion binding|GO:0005509||IEA  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EPS15 homology (EH) (InterPro:IPR000261), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT1G21630.1); Has 10692 Blast hits to 4147 proteins in 323 species: Archae - 12; Bacteria - 3271; Metazoa - 3323; Fungi - 1334; Plants - 262; Viruses - 16; Other Eukaryotes - 2474 (source: NCBI BLink).  protein_id AT1G20760.1p  transcript_id AT1G20760.1  protein_id AT1G20760.1p  transcript_id AT1G20760.1  
At1g20770	chr1:007216481	0.0	C/7216481-7216648,7216085-7216202,7215816-7215962,7215683-7215732,7215505-7215592,7215345-7215421	AT1G20770.1  CDS  gene_syn F2D10.26, F2D10_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 37 Blast hits to 37 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 2; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G20770.1p  transcript_id AT1G20770.1  protein_id AT1G20770.1p  transcript_id AT1G20770.1  
At1g20780	chr1:007217812	0.0	W/7217812-7218348,7218445-7218754,7219051-7220609	AT1G20780.1  CDS  gene_syn ARABIDOPSIS THALIANA PLANT U-BOX 44, ATPUB44, F2D10.27, F2D10_27, PLANT U-BOX 44, PUB44, SAUL1, SENESCENCE-ASSOCIATED E3 UBIQUITIN LIGASE 1  gene SAUL1  function Encodes a protein containing a U-box and an ARM domain.  go_component plasma membrane|GO:0005886|17644812|IDA  go_process regulation of abscisic acid biosynthetic process|GO:0010115|19309463|IMP  go_process senescence|GO:0010149|19309463|IMP  go_process regulation of chlorophyll catabolic process|GO:0010271|19309463|IMP  go_process regulation of chlorophyll biosynthetic process|GO:0010380|19309463|IMP  go_function ubiquitin-protein ligase activity|GO:0004842|19309463|IDA  product SAUL1 (SENESCENCE-ASSOCIATED E3 UBIQUITIN LIGASE 1); ubiquitin-protein ligase  note SENESCENCE-ASSOCIATED E3 UBIQUITIN LIGASE 1 (SAUL1); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: regulation of chlorophyll biosynthetic process, regulation of chlorophyll catabolic process, regulation of abscisic acid biosynthetic process, senescence; LOCATED IN: plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), U box (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein / U-box domain-containing protein (TAIR:AT1G76390.2); Has 1641 Blast hits to 1583 proteins in 139 species: Archae - 0; Bacteria - 18; Metazoa - 357; Fungi - 111; Plants - 1004; Viruses - 3; Other Eukaryotes - 148 (source: NCBI BLink).  protein_id AT1G20780.1p  transcript_id AT1G20780.1  protein_id AT1G20780.1p  transcript_id AT1G20780.1  
At1g20790	chr1:007220961	0.0	C/7220961-7222268	AT1G20790.1  CDS  gene_syn F2D10.28, F2D10_28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G20795.1); Has 1721 Blast hits to 619 proteins in 150 species: Archae - 2; Bacteria - 422; Metazoa - 391; Fungi - 63; Plants - 324; Viruses - 75; Other Eukaryotes - 444 (source: NCBI BLink).  protein_id AT1G20790.1p  transcript_id AT1G20790.1  protein_id AT1G20790.1p  transcript_id AT1G20790.1  
At1g20795	chr1:007226310	0.0	C/7226310-7227566	AT1G20795.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G20790.1); Has 65 Blast hits to 62 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G20795.1p  transcript_id AT1G20795.1  protein_id AT1G20795.1p  transcript_id AT1G20795.1  
At1g20800	chr1:007231053	0.0	C/7231053-7231600,7228718-7229648	AT1G20800.1  CDS  gene_syn F2D10.30, F2D10_30  function F-box family protein  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G20795.1).  protein_id AT1G20800.1p  transcript_id AT1G20800.1  protein_id AT1G20800.1p  transcript_id AT1G20800.1  
At1g20810	chr1:007232025	0.0	W/7232025-7232289,7232551-7232621,7232717-7232803,7232883-7233032,7233119-7233178,7233302-7233367	AT1G20810.1  CDS  gene_syn F2D10.32, F2D10_32  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_process protein folding|GO:0006457||IEA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543||ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  go_function FK506 binding|GO:0005528||ISS  product immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein  note immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: thylakoid lumen, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative (TAIR:AT3G10060.1); Has 1226 Blast hits to 1216 proteins in 397 species: Archae - 0; Bacteria - 652; Metazoa - 72; Fungi - 47; Plants - 158; Viruses - 0; Other Eukaryotes - 297 (source: NCBI BLink).  protein_id AT1G20810.1p  transcript_id AT1G20810.1  protein_id AT1G20810.1p  transcript_id AT1G20810.1  
At1g20816	chr1:007233814	0.0	W/7233814-7233906,7234275-7234349,7234430-7234582,7234671-7234769,7234858-7234941	AT1G20816.1  CDS  gene_syn F2D10.33, F2D10_33  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76405.2); Has 28 Blast hits to 27 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G20816.1p  transcript_id AT1G20816.1  protein_id AT1G20816.1p  transcript_id AT1G20816.1  
At1g20823	chr1:007238880	0.0	W/7238880-7239473	AT1G20823.1  CDS  gene_syn F2D10.34, F2D10_34  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process response to chitin|GO:0010200|17722694|IEP  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: ATL8; protein binding / zinc ion binding (TAIR:AT1G76410.1); Has 6059 Blast hits to 6039 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 2063; Fungi - 426; Plants - 2686; Viruses - 21; Other Eukaryotes - 863 (source: NCBI BLink).  protein_id AT1G20823.1p  transcript_id AT1G20823.1  protein_id AT1G20823.1p  transcript_id AT1G20823.1  
At1g20820	chr1:007242761	0.0	C/7242761-7242832	AT1G20820.1  tRNA  gene_syn 61258.TRNA-TRP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Trp (anticodon: CCA)  transcript_id AT1G20820.1  
At1g20830	chr1:007242933	0.0	W/7242933-7242980,7243103-7243384,7243754-7243926,7244095-7244482,7244578-7244736	AT1G20830.1  CDS  gene_syn F2D10.35, F2D10_35  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 17 Blast hits to 17 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G20830.1p  transcript_id AT1G20830.1  protein_id AT1G20830.1p  transcript_id AT1G20830.1  
At1g20840	chr1:007247596	0.0	C/7247596-7247674,7246927-7247487,7245923-7246848,7245641-7245828,7245107-7245557	AT1G20840.1  CDS  gene_syn F9H16.18, F9H16_18, TMT1, TONOPLAST MONOSACCHARIDE TRANSPORTER1  gene TMT1  function The protein encoded by this gene is found in the tonoplast (vacuole membrane) of Arabidopsis cells. The gene is expressed at highest levels in juvenile (sink) and adult (source) leaves, followed by flower tissues.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plant-type vacuole membrane|GO:0009705|17158605|IDA  go_component membrane|GO:0016020||ISS  go_process response to cold|GO:0009409|17158605|IEP  go_process response to water deprivation|GO:0009414|17158605|IEP  go_process response to nematode|GO:0009624|16478044|IEP  go_process response to salt stress|GO:0009651|17158605|IEP  go_process response to sucrose stimulus|GO:0009744|17158605|IEP  go_process response to glucose stimulus|GO:0009749|17158605|IEP  go_process response to fructose stimulus|GO:0009750|17158605|IEP  go_function nucleoside transmembrane transporter activity|GO:0005337||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product TMT1 (TONOPLAST MONOSACCHARIDE TRANSPORTER1); carbohydrate transmembrane transporter/ nucleoside transmembrane transporter/ sugar:hydrogen symporter  note TONOPLAST MONOSACCHARIDE TRANSPORTER1 (TMT1); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, nucleoside transmembrane transporter activity; INVOLVED IN: in 7 processes; LOCATED IN: plant-type vacuole membrane, plasma membrane, vacuole, membrane; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2); carbohydrate transmembrane transporter/ nucleoside transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT4G35300.1); Has 30001 Blast hits to 21732 proteins in 1381 species: Archae - 428; Bacteria - 11632; Metazoa - 6371; Fungi - 7846; Plants - 2133; Viruses - 0; Other Eukaryotes - 1591 (source: NCBI BLink).  protein_id AT1G20840.1p  transcript_id AT1G20840.1  protein_id AT1G20840.1p  transcript_id AT1G20840.1  
At1g20850	chr1:007252208	0.0	W/7252208-7252685,7252772-7253007,7253090-7253230,7253322-7253537	AT1G20850.1  CDS  gene_syn F9H16.17, F9H16_17, PAPAIN-TYPE CYSTEINE ENDOPEPTIDASE XCP2, XCP2, xylem cysteine peptidase 2  gene XCP2  go_component cell wall|GO:0005618|15593128|IDA  go_process proteolysis|GO:0006508||ISS  go_process developmental programmed cell death|GO:0010623|18573193|IMP  go_function peptidase activity|GO:0008233|10889267|ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product XCP2 (xylem cysteine peptidase 2); cysteine-type peptidase/ peptidase  note xylem cysteine peptidase 2 (XCP2); FUNCTIONS IN: peptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis, developmental programmed cell death; LOCATED IN: cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: XCP1 (XYLEM CYSTEINE PEPTIDASE 1); cysteine-type endopeptidase/ cysteine-type peptidase (TAIR:AT4G35350.1); Has 6049 Blast hits to 6003 proteins in 574 species: Archae - 29; Bacteria - 92; Metazoa - 2825; Fungi - 4; Plants - 1220; Viruses - 118; Other Eukaryotes - 1761 (source: NCBI BLink).  protein_id AT1G20850.1p  transcript_id AT1G20850.1  protein_id AT1G20850.1p  transcript_id AT1G20850.1  
At1g20860	chr1:007257992	0.0	C/7257992-7258677,7254007-7254925	AT1G20860.1  CDS  gene_syn F9H16.16, F9H16_16  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function phosphate transmembrane transporter activity|GO:0015114||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product phosphate transporter family protein  note phosphate transporter family protein; FUNCTIONS IN: phosphate transmembrane transporter activity, carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: phosphate transporter family protein (TAIR:AT1G76430.1); Has 17862 Blast hits to 17806 proteins in 1235 species: Archae - 328; Bacteria - 11987; Metazoa - 1474; Fungi - 2489; Plants - 835; Viruses - 0; Other Eukaryotes - 749 (source: NCBI BLink).  protein_id AT1G20860.1p  transcript_id AT1G20860.1  protein_id AT1G20860.1p  transcript_id AT1G20860.1  
At1g20870	chr1:007259629	0.0	C/7259629-7260775,7259287-7259531	AT1G20870.1  CDS  gene_syn F9H16.15, F9H16_15  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54850.1); Has 48 Blast hits to 39 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G20870.1p  transcript_id AT1G20870.1  protein_id AT1G20870.1p  transcript_id AT1G20870.1  
At1g20875	chr1:007261481	0.0	W/7261481-7261681	AT1G20875.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G20875.1p  transcript_id AT1G20875.1  protein_id AT1G20875.1p  transcript_id AT1G20875.1  
At1g20880	chr1:007264628	0.0	C/7264628-7264834,7264140-7264284,7263871-7263997,7263285-7263327,7262879-7263181	AT1G20880.1  CDS  gene_syn F9H16.14, F9H16_14  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT1G76460.1); Has 11636 Blast hits to 9514 proteins in 483 species: Archae - 0; Bacteria - 541; Metazoa - 6778; Fungi - 1119; Plants - 2221; Viruses - 0; Other Eukaryotes - 977 (source: NCBI BLink).  protein_id AT1G20880.1p  transcript_id AT1G20880.1  protein_id AT1G20880.1p  transcript_id AT1G20880.1  
At1g20890	chr1:007266972	0.0	C/7266972-7267060,7266737-7266875,7266513-7266644,7266342-7266432,7266088-7266230	AT1G20890.1  CDS  gene_syn F9H16.13, F9H16_13  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76480.1); Has 22 Blast hits to 22 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G20890.1p  transcript_id AT1G20890.1  protein_id AT1G20890.1p  transcript_id AT1G20890.1  
At1g20900	chr1:007273024	0.0	W/7273024-7273959	AT1G20900.1  CDS  gene_syn AHL27, ESC, ESCAROLA, F9H16.12, F9H16_12, ORE7, ORESARA 7  gene ESC  function Encodes an AT hook domain containing protein that acts redundantly with SOB3 to modulate hypocotyl growth inhibition in response to light.  go_component nucleus|GO:0005634|17971039|IDA  go_process establishment or maintenance of chromatin architecture|GO:0006325|17971039|IMP  go_process photomorphogenesis|GO:0009640|18088311|IMP  go_process leaf senescence|GO:0010150|17971039|IMP  go_function double-stranded DNA binding|GO:0003690|17971039|IDA  product ESC (ESCAROLA); double-stranded DNA binding  note ESCAROLA (ESC); FUNCTIONS IN: double-stranded DNA binding; INVOLVED IN: leaf senescence, establishment or maintenance of chromatin architecture, photomorphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: SOB3 (SUPPRESSOR OF PHYB-4 3); DNA binding (TAIR:AT1G76500.1); Has 1873 Blast hits to 1666 proteins in 180 species: Archae - 0; Bacteria - 506; Metazoa - 530; Fungi - 103; Plants - 491; Viruses - 15; Other Eukaryotes - 228 (source: NCBI BLink).  protein_id AT1G20900.1p  transcript_id AT1G20900.1  protein_id AT1G20900.1p  transcript_id AT1G20900.1  
At1g20910	chr1:007280348	0.0	C/7280348-7280635,7280081-7280214,7279956-7279995,7279534-7279586,7279392-7279437,7279041-7279133,7278476-7278598,7278272-7278320,7278131-7278194,7277894-7277960,7277732-7277782,7277397-7277489,7277209-7277304	AT1G20910.1  CDS  gene_syn F9H16.11, F9H16_11  go_component intracellular|GO:0005622||IEA  go_component intracellular|GO:0005622||ISS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ARID/BRIGHT DNA-binding domain-containing protein  note ARID/BRIGHT DNA-binding domain-containing protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978), AT-rich interaction region (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: ARID/BRIGHT DNA-binding domain-containing protein (TAIR:AT1G76510.2); Has 550 Blast hits to 550 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 388; Fungi - 53; Plants - 79; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G20910.1p  transcript_id AT1G20910.1  protein_id AT1G20910.1p  transcript_id AT1G20910.1  
At1g20920	chr1:007285342	0.0	W/7285342-7288842	AT1G20920.1  CDS  gene_syn F9H16.10, F9H16_10  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD box RNA helicase, putative  note DEAD box RNA helicase, putative; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (TAIR:AT3G09620.1); Has 311341 Blast hits to 125887 proteins in 2991 species: Archae - 1477; Bacteria - 39060; Metazoa - 141008; Fungi - 36045; Plants - 14531; Viruses - 1599; Other Eukaryotes - 77621 (source: NCBI BLink).  protein_id AT1G20920.1p  transcript_id AT1G20920.1  protein_id AT1G20920.1p  transcript_id AT1G20920.1  
At1g20920	chr1:007286356	0.0	W/7286356-7288842	AT1G20920.2  CDS  gene_syn F9H16.10, F9H16_10  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD box RNA helicase, putative  note DEAD box RNA helicase, putative; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (TAIR:AT3G09620.1); Has 29791 Blast hits to 29110 proteins in 1752 species: Archae - 496; Bacteria - 11912; Metazoa - 5594; Fungi - 3574; Plants - 1454; Viruses - 10; Other Eukaryotes - 6751 (source: NCBI BLink).  protein_id AT1G20920.2p  transcript_id AT1G20920.2  protein_id AT1G20920.2p  transcript_id AT1G20920.2  
At1g20925	chr1:007290612	0.0	W/7290612-7290752,7290831-7290910,7290983-7291107,7291182-7291303,7291399-7291533,7291610-7291702,7291793-7291893,7291973-7292025,7292114-7292299,7292383-7292507	AT1G20925.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process auxin polar transport|GO:0009926||ISS  go_function auxin:hydrogen symporter activity|GO:0009672||ISS  product auxin efflux carrier family protein  note auxin efflux carrier family protein; FUNCTIONS IN: auxin:hydrogen symporter activity; INVOLVED IN: auxin polar transport; LOCATED IN: endomembrane system, integral to membrane; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: auxin efflux carrier family protein (TAIR:AT1G76520.2); Has 376 Blast hits to 360 proteins in 73 species: Archae - 2; Bacteria - 22; Metazoa - 0; Fungi - 124; Plants - 181; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G20925.1p  transcript_id AT1G20925.1  protein_id AT1G20925.1p  transcript_id AT1G20925.1  
At1g20930	chr1:007294432	0.0	C/7294432-7294664,7293909-7294050,7293759-7293820,7293555-7293666,7293329-7293422,7293172-7293241,7292942-7293080,7292752-7292847	AT1G20930.1  CDS  gene_syn CDKB2;2, CYCLIN-DEPENDENT KINASE B2;2, F9H16.8, F9H16_8  gene CDKB2;2  function Cyclin-dependent kinase, expressed in flowers and suspension cell culture, expression peaks during M phase in synchronized cultures. Required for proper organization of the shoot apical meristem and for hormone signaling. Expressed in the shoot apical meristem. Involved in regulation of the G2/M transition of the mitotic cell cycle.  go_process M phase of mitotic cell cycle|GO:0000087|12000456|IEP  go_process regulation of mitotic cell cycle|GO:0007346|11432958|TAS  go_process hormone-mediated signaling|GO:0009755|18223038|IEP  go_process hormone-mediated signaling|GO:0009755|18223038|IMP  go_process regulation of meristem organization|GO:0009934|18223038|IMP  go_process regulation of G2/M transition of mitotic cell cycle|GO:0010389|18223038|IMP  go_function cyclin-dependent protein kinase activity|GO:0004693|11432958|TAS  go_function kinase activity|GO:0016301||ISS  product CDKB2;2 (CYCLIN-DEPENDENT KINASE B2;2); cyclin-dependent protein kinase/ kinase  note CYCLIN-DEPENDENT KINASE B2;2 (CDKB2;2); FUNCTIONS IN: kinase activity, cyclin-dependent protein kinase activity; INVOLVED IN: regulation of meristem organization, regulation of mitotic cell cycle, hormone-mediated signaling, regulation of G2/M transition of mitotic cell cycle, M phase of mitotic cell cycle; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CDKB2;1 (cyclin-dependent kinase B2;1); cyclin-dependent protein kinase/ kinase/ protein binding (TAIR:AT1G76540.1); Has 80335 Blast hits to 79201 proteins in 1949 species: Archae - 42; Bacteria - 6262; Metazoa - 35505; Fungi - 8000; Plants - 14015; Viruses - 403; Other Eukaryotes - 16108 (source: NCBI BLink).  protein_id AT1G20930.1p  transcript_id AT1G20930.1  protein_id AT1G20930.1p  transcript_id AT1G20930.1  
At1g20940	chr1:007295274	0.0	C/7295274-7296518	AT1G20940.1  CDS  gene_syn F9H16.7, F9H16_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20240.1); Has 42 Blast hits to 40 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G20940.1p  transcript_id AT1G20940.1  protein_id AT1G20940.1p  transcript_id AT1G20940.1  
At1g20950	chr1:007301247	0.0	C/7301247-7301336,7300788-7300960,7300575-7300687,7300407-7300481,7300199-7300312,7300045-7300112,7299880-7299963,7299684-7299737,7299415-7299495,7299226-7299319,7299059-7299132,7298860-7298970,7298724-7298768,7298575-7298631,7298349-7298453,7298144-7298260,7297936-7298045,7297685-7297850,7297467-7297580	AT1G20950.1  CDS  gene_syn F9H16.6, F9H16_6  go_component pyrophosphate-dependent phosphofructokinase complex, alpha-subunit complex|GO:0010317||ISS  go_process response to sucrose stimulus|GO:0009744|16463203|IEP  go_process response to glucose stimulus|GO:0009749|16463203|IEP  go_process response to fructose stimulus|GO:0009750|16463203|IEP  go_function diphosphate-fructose-6-phosphate 1-phosphotransferase activity|GO:0047334||ISS  product pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related  note pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related; FUNCTIONS IN: diphosphate-fructose-6-phosphate 1-phosphotransferase activity; INVOLVED IN: response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus; LOCATED IN: pyrophosphate-dependent phosphofructokinase complex, alpha-subunit complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase PfpB (InterPro:IPR011183), Phosphofructokinase (InterPro:IPR000023); BEST Arabidopsis thaliana protein match is: pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative (TAIR:AT1G76550.1); Has 2379 Blast hits to 2314 proteins in 706 species: Archae - 15; Bacteria - 1516; Metazoa - 2; Fungi - 0; Plants - 257; Viruses - 0; Other Eukaryotes - 589 (source: NCBI BLink).  protein_id AT1G20950.1p  transcript_id AT1G20950.1  protein_id AT1G20950.1p  transcript_id AT1G20950.1  
At1g20960	chr1:007306975	0.0	C/7306975-7309914,7305879-7306268,7302591-7305776	AT1G20960.1  CDS  gene_syn F9H16.5, F9H16_5, emb1507, embryo defective 1507  gene emb1507  go_component nucleolus|GO:0005730|15496452|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function ATP-dependent helicase activity|GO:0008026||ISS  product emb1507 (embryo defective 1507); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding / nucleoside-triphosphatase/ nucleotide binding  note embryo defective 1507 (emb1507); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: nucleolus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase, putative (TAIR:AT2G42270.1); Has 13822 Blast hits to 8453 proteins in 1026 species: Archae - 1055; Bacteria - 3787; Metazoa - 2595; Fungi - 1690; Plants - 529; Viruses - 118; Other Eukaryotes - 4048 (source: NCBI BLink).  protein_id AT1G20960.1p  transcript_id AT1G20960.1  protein_id AT1G20960.1p  transcript_id AT1G20960.1  
At1g20967	chr1:007313081	0.0	W/7313081-7313227	AT1G20967.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G20967.1p  transcript_id AT1G20967.1  protein_id AT1G20967.1p  transcript_id AT1G20967.1  
At1g20970	chr1:007314338	0.0	W/7314338-7316579,7316676-7316914,7317001-7317159,7317262-7317441,7317660-7317854,7317952-7318050,7318129-7318749,7318887-7319246	AT1G20970.1  CDS  gene_syn F9H16.4, F9H16_4  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: guard cell, cultured cell; BEST Arabidopsis thaliana protein match is: PPI1 (PROTON PUMP INTERACTOR 1); protein binding (TAIR:AT4G27500.1); Has 53409 Blast hits to 33585 proteins in 1572 species: Archae - 464; Bacteria - 7066; Metazoa - 25076; Fungi - 5173; Plants - 1740; Viruses - 257; Other Eukaryotes - 13633 (source: NCBI BLink).  protein_id AT1G20970.1p  transcript_id AT1G20970.1  protein_id AT1G20970.1p  transcript_id AT1G20970.1  
At1g20980	chr1:007325042	0.0	W/7325042-7325538,7325626-7325831,7325929-7326731,7326823-7326897,7326989-7327096,7327180-7327297,7327391-7327526,7327609-7327753,7327832-7328431,7328514-7328933	AT1G20980.1  CDS  gene_syn ATSPL14, F9H16.3, F9H16_3, FBR6, SPL14, SPL1R2, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 14, squamosa promoter binding protein-like 14  gene SPL14  function Encodes a nuclear plant-specific protein with features characteristic of a transcriptional regulator, including a nuclear localization signal sequence, a plant-specific DNA binding domain (the SBP box), and a protein interaction motif (ankyrin repeats). It unctions as a transcriptional regulator that plays a role not only in sensitivity to FB1, but also in the development of normal plant architecture.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_component nucleus|GO:0005634|15703061|IDA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process regulation of transcription|GO:0045449|15703061|IDA  go_function DNA binding|GO:0003677|15703061|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|15703061|IDA  product SPL14 (squamosa promoter binding protein-like 14); DNA binding / transcription activator/ transcription factor  note squamosa promoter binding protein-like 14 (SPL14); FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: defense response to bacterium, regulation of transcription; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT1G76580.1); Has 1555 Blast hits to 820 proteins in 90 species: Archae - 0; Bacteria - 33; Metazoa - 293; Fungi - 89; Plants - 601; Viruses - 0; Other Eukaryotes - 539 (source: NCBI BLink).  protein_id AT1G20980.1p  transcript_id AT1G20980.1  protein_id AT1G20980.1p  transcript_id AT1G20980.1  
At1g20990	chr1:007331532	0.0	C/7331532-7331946,7330524-7331068	AT1G20990.1  CDS  gene_syn F9H16.2, F9H16_2  go_component chloroplast|GO:0009507||IEA  product DC1 domain-containing protein  note DC1 domain-containing protein; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16050.1); Has 1278 Blast hits to 551 proteins in 25 species: Archae - 0; Bacteria - 2; Metazoa - 13; Fungi - 0; Plants - 1255; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G20990.1p  transcript_id AT1G20990.1  protein_id AT1G20990.1p  transcript_id AT1G20990.1  
At1g21000	chr1:007337919	0.0	W/7337919-7337921,7338007-7338210,7338298-7338513,7338771-7339088	AT1G21000.1  CDS  gene_syn F9H16.1, F9H16_1  go_process biological_process|GO:0008150||ND  go_function binding|GO:0005488||ISS  product zinc-binding family protein  note zinc-binding family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734); BEST Arabidopsis thaliana protein match is: zinc-binding family protein (TAIR:AT1G76590.1); Has 193 Blast hits to 193 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 193; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21000.1p  transcript_id AT1G21000.1  protein_id AT1G21000.1p  transcript_id AT1G21000.1  
At1g21000	chr1:007338013	0.0	W/7338013-7338210,7338298-7338513,7338771-7339088	AT1G21000.2  CDS  gene_syn F9H16.1, F9H16_1  go_process biological_process|GO:0008150||ND  go_function binding|GO:0005488||ISS  product zinc-binding family protein  note zinc-binding family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734); BEST Arabidopsis thaliana protein match is: zinc-binding family protein (TAIR:AT1G76590.1); Has 193 Blast hits to 193 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 193; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21000.2p  transcript_id AT1G21000.2  protein_id AT1G21000.2p  transcript_id AT1G21000.2  
At1g21010	chr1:007346239	0.0	W/7346239-7346871	AT1G21010.1  CDS  gene_syn F9H16.19, F9H16_19  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76600.1); Has 113 Blast hits to 113 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21010.1p  transcript_id AT1G21010.1  protein_id AT1G21010.1p  transcript_id AT1G21010.1  
At1g21020	chr1:007353540	0.0	W/7353540-7357981	AT1G21020.1  mRNA_TE_gene  pseudo  gene_syn T22I11.15, T22I11_15  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G08740.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G26530.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G44890.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1)  
At1g21040	chr1:007359983	0.0	C/7359983-7363334	AT1G21040.1  mRNA_TE_gene  pseudo  gene_syn T22I11.14  note Transposable element gene, Mutator-like transposase family, has a 3.3e-87 P-value blast match to Q9SLM0 /314-478 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g21050	chr1:007366859	0.0	W/7366859-7367596	AT1G21050.1  CDS  gene_syn T22I11.13, T22I11_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF617, plant (InterPro:IPR006460); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76610.1); Has 134 Blast hits to 134 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21050.1p  transcript_id AT1G21050.1  protein_id AT1G21050.1p  transcript_id AT1G21050.1  
At1g21060	chr1:007371799	0.0	W/7371799-7371857,7371947-7372013,7372098-7372160,7372248-7372532,7372610-7372959,7373055-7373154,7373238-7373291,7373371-7373457,7373543-7373671,7373762-7374085	AT1G21060.1  CDS  gene_syn T22I11.12, T22I11_12  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76620.1); Has 316 Blast hits to 310 proteins in 52 species: Archae - 0; Bacteria - 26; Metazoa - 29; Fungi - 3; Plants - 240; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G21060.1p  transcript_id AT1G21060.1  protein_id AT1G21060.1p  transcript_id AT1G21060.1  
At1g21065	chr1:007374210	0.0	W/7374210-7374503,7374623-7374683,7374794-7374888,7374968-7375001,7375166-7375220,7375320-7375362,7375573-7375644	AT1G21065.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0047 (InterPro:IPR001602); Has 2768 Blast hits to 2763 proteins in 706 species: Archae - 132; Bacteria - 1316; Metazoa - 36; Fungi - 64; Plants - 43; Viruses - 0; Other Eukaryotes - 1177 (source: NCBI BLink).  protein_id AT1G21065.1p  transcript_id AT1G21065.1  protein_id AT1G21065.1p  transcript_id AT1G21065.1  
At1g21070	chr1:007377672	0.0	C/7377672-7377810,7377381-7377565,7377085-7377285,7376589-7376750,7376148-7376507	AT1G21070.1  CDS  gene_syn T22I11.10, T22I11_10  go_component membrane|GO:0016020||ISS  product transporter-related  note transporter-related; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: transporter-related (TAIR:AT1G76670.1); Has 1300 Blast hits to 1295 proteins in 167 species: Archae - 0; Bacteria - 18; Metazoa - 331; Fungi - 208; Plants - 587; Viruses - 0; Other Eukaryotes - 156 (source: NCBI BLink).  protein_id AT1G21070.1p  transcript_id AT1G21070.1  protein_id AT1G21070.1p  transcript_id AT1G21070.1  
At1g21080	chr1:007380802	0.0	C/7380802-7380927,7380410-7380536,7380133-7380291,7379753-7379931,7379582-7379662,7379332-7379469,7378822-7378926	AT1G21080.2  CDS  gene_syn T22I11.9, T22I11_9  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT1G76700.1).  protein_id AT1G21080.2p  transcript_id AT1G21080.2  protein_id AT1G21080.2p  transcript_id AT1G21080.2  
At1g21080	chr1:007382189	0.0	C/7382189-7382275,7381805-7381864,7381099-7381181,7380802-7380958,7380410-7380536,7380133-7380291,7379753-7379931,7379582-7379662,7379332-7379469,7378822-7378926	AT1G21080.1  CDS  gene_syn T22I11.9, T22I11_9  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT1G76700.1); Has 15885 Blast hits to 15795 proteins in 1909 species: Archae - 104; Bacteria - 5202; Metazoa - 3341; Fungi - 1479; Plants - 1172; Viruses - 17; Other Eukaryotes - 4570 (source: NCBI BLink).  protein_id AT1G21080.1p  transcript_id AT1G21080.1  protein_id AT1G21080.1p  transcript_id AT1G21080.1  
At1g21090	chr1:007384854	0.0	W/7384854-7385007,7385099-7385214,7385638-7386024,7386128-7386199	AT1G21090.1  CDS  gene_syn T22I11.8, T22I11_8  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; LOCATED IN: anchored to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cupredoxin (InterPro:IPR008972); Has 179 Blast hits to 175 proteins in 34 species: Archae - 0; Bacteria - 4; Metazoa - 19; Fungi - 8; Plants - 142; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G21090.1p  transcript_id AT1G21090.1  protein_id AT1G21090.1p  transcript_id AT1G21090.1  
At1g21100	chr1:007387870	0.0	C/7387870-7388318,7387407-7387779,7386991-7387290	AT1G21100.1  CDS  gene_syn T22I11.7, T22I11_7  go_function methyltransferase activity|GO:0008168||IEA  go_function O-methyltransferase activity|GO:0008171||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_component cytosol|GO:0005829|9484457|TAS  product O-methyltransferase, putative  note O-methyltransferase, putative; FUNCTIONS IN: methyltransferase activity, O-methyltransferase activity, protein dimerization activity; LOCATED IN: cytosol; EXPRESSED IN: stem, cotyledon, hypocotyl, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase, putative (TAIR:AT1G21130.1); Has 2126 Blast hits to 2123 proteins in 426 species: Archae - 0; Bacteria - 600; Metazoa - 84; Fungi - 432; Plants - 916; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).  protein_id AT1G21100.1p  transcript_id AT1G21100.1  protein_id AT1G21100.1p  transcript_id AT1G21100.1  
At1g21110	chr1:007390971	0.0	C/7390971-7391419,7390503-7390875,7390110-7390409	AT1G21110.1  CDS  gene_syn T22I11.6, T22I11_6  go_function methyltransferase activity|GO:0008168||IEA  go_function O-methyltransferase activity|GO:0008171||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_component cytosol|GO:0005829|9484457|TAS  product O-methyltransferase, putative  note O-methyltransferase, putative; FUNCTIONS IN: methyltransferase activity, O-methyltransferase activity, protein dimerization activity; LOCATED IN: cytosol; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase, putative (TAIR:AT1G21120.1); Has 2067 Blast hits to 2064 proteins in 410 species: Archae - 0; Bacteria - 560; Metazoa - 81; Fungi - 421; Plants - 923; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT1G21110.1p  transcript_id AT1G21110.1  protein_id AT1G21110.1p  transcript_id AT1G21110.1  
At1g21120	chr1:007396192	0.0	C/7396192-7396640,7395724-7396096,7395331-7395630	AT1G21120.1  CDS  gene_syn T22I11.5, T22I11_5  go_function methyltransferase activity|GO:0008168||IEA  go_function O-methyltransferase activity|GO:0008171||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_component cytosol|GO:0005829|9484457|TAS  product O-methyltransferase, putative  note O-methyltransferase, putative; FUNCTIONS IN: methyltransferase activity, O-methyltransferase activity, protein dimerization activity; LOCATED IN: cytosol; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase, putative (TAIR:AT1G21110.1); Has 2072 Blast hits to 2069 proteins in 418 species: Archae - 0; Bacteria - 580; Metazoa - 81; Fungi - 418; Plants - 916; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT1G21120.1p  transcript_id AT1G21120.1  protein_id AT1G21120.1p  transcript_id AT1G21120.1  
At1g21130	chr1:007400022	0.0	C/7400022-7400470,7399489-7399930	AT1G21130.2  CDS  gene_syn T22I11.4, T22I11_4  go_function methyltransferase activity|GO:0008168||IEA  go_function O-methyltransferase activity|GO:0008171||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_component cytosol|GO:0005829|9484457|TAS  product O-methyltransferase, putative  note O-methyltransferase, putative; FUNCTIONS IN: methyltransferase activity, protein dimerization activity, O-methyltransferase activity; LOCATED IN: cytosol; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase, putative (TAIR:AT1G21120.1); Has 1099 Blast hits to 1098 proteins in 213 species: Archae - 0; Bacteria - 180; Metazoa - 8; Fungi - 18; Plants - 877; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G21130.2p  transcript_id AT1G21130.2  protein_id AT1G21130.2p  transcript_id AT1G21130.2  
At1g21130	chr1:007400022	0.0	C/7400022-7400470,7399558-7399930,7399170-7399469	AT1G21130.1  CDS  gene_syn T22I11.4, T22I11_4  go_function methyltransferase activity|GO:0008168||IEA  go_function O-methyltransferase activity|GO:0008171||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_component cytosol|GO:0005829|9484457|TAS  product O-methyltransferase, putative  note O-methyltransferase, putative; FUNCTIONS IN: methyltransferase activity, protein dimerization activity, O-methyltransferase activity; LOCATED IN: cytosol; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase, putative (TAIR:AT1G21100.1); Has 2127 Blast hits to 2124 proteins in 428 species: Archae - 0; Bacteria - 609; Metazoa - 82; Fungi - 434; Plants - 916; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT1G21130.1p  transcript_id AT1G21130.1  protein_id AT1G21130.1p  transcript_id AT1G21130.1  
At1g21140	chr1:007404464	0.0	W/7404464-7405066	AT1G21140.1  CDS  gene_syn T22I11.3, T22I11_3  go_process biological_process|GO:0008150||ND  product nodulin, putative  note nodulin, putative; INVOLVED IN: biological_process unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF125, transmembrane (InterPro:IPR008217); BEST Arabidopsis thaliana protein match is: nodulin, putative (TAIR:AT3G43630.1); Has 1036 Blast hits to 1028 proteins in 341 species: Archae - 39; Bacteria - 627; Metazoa - 0; Fungi - 71; Plants - 99; Viruses - 0; Other Eukaryotes - 200 (source: NCBI BLink).  protein_id AT1G21140.1p  transcript_id AT1G21140.1  protein_id AT1G21140.1p  transcript_id AT1G21140.1  
At1g21150	chr1:007406406	0.0	C/7406406-7407578	AT1G21150.1  CDS  gene_syn T22I11.17, T22I11_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial transcription termination factor family protein / mTERF family protein  note mitochondrial transcription termination factor family protein / mTERF family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: mitochondrial transcription termination factor family protein / mTERF family protein (TAIR:AT5G07900.1); Has 452 Blast hits to 369 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 439; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G21150.1p  transcript_id AT1G21150.1  protein_id AT1G21150.1p  transcript_id AT1G21150.1  
At1g21160	chr1:007411141	0.0	C/7411141-7412455,7410501-7411048,7410311-7410418,7410116-7410216,7409929-7410019,7409738-7409848,7409564-7409629,7409380-7409439,7408711-7409268,7408489-7408626,7408292-7408408,7408121-7408186	AT1G21160.1  CDS  gene_syn T22I11.2, T22I11_2  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function translation initiation factor activity|GO:0003743||ISS  product GTP binding / GTPase/ translation initiation factor  note GTP binding / GTPase/ translation initiation factor; FUNCTIONS IN: GTP binding, GTPase activity, translation initiation factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation initiation factor 2 related (InterPro:IPR015760), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 2 family protein / eIF-2 family protein (TAIR:AT1G76810.1); Has 71507 Blast hits to 54819 proteins in 2426 species: Archae - 693; Bacteria - 21506; Metazoa - 19210; Fungi - 4963; Plants - 1848; Viruses - 213; Other Eukaryotes - 23074 (source: NCBI BLink).  protein_id AT1G21160.1p  transcript_id AT1G21160.1  protein_id AT1G21160.1p  transcript_id AT1G21160.1  
At1g21170	chr1:007413050	0.0	W/7413050-7413469,7413798-7413955,7414070-7414155,7414271-7414465,7414549-7414676,7414762-7414920,7415054-7415158,7415419-7415493,7415735-7415872,7415969-7416154,7416243-7416371,7416507-7416633,7416714-7416924,7417310-7417425,7417543-7417771,7418030-7418123,7418266-7418343,7418456-7418512,7418624-7418773,7418870-7419085,7419196-7419411	AT1G21170.1  CDS  gene_syn SEC5B  gene SEC5B  go_component cytosol|GO:0005829|18433157|IDA  go_process pollen germination|GO:0009846|18492870|IGI  go_process pollen tube growth|GO:0009860|18492870|IGI  go_function molecular_function|GO:0003674||ND  product SEC5B  note SEC5B; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen germination, pollen tube growth; LOCATED IN: cytosol; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: SEC5A (EXOCYST COMPLEX COMPONENT SEC5) (TAIR:AT1G76850.1); Has 651 Blast hits to 643 proteins in 149 species: Archae - 0; Bacteria - 21; Metazoa - 353; Fungi - 111; Plants - 82; Viruses - 8; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT1G21170.1p  transcript_id AT1G21170.1  protein_id AT1G21170.1p  transcript_id AT1G21170.1  
At1g21190	chr1:007420740	0.0	C/7420740-7420856,7420392-7420487,7419989-7420069	AT1G21190.1  CDS  gene_syn F16F4.12, F16F4_12  go_component nucleus|GO:0005634||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative  note small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative (TAIR:AT1G76860.1); Has 924 Blast hits to 924 proteins in 209 species: Archae - 244; Bacteria - 0; Metazoa - 275; Fungi - 141; Plants - 102; Viruses - 0; Other Eukaryotes - 162 (source: NCBI BLink).  protein_id AT1G21190.1p  transcript_id AT1G21190.1  protein_id AT1G21190.1p  transcript_id AT1G21190.1  
At1g21200	chr1:007421483	0.0	W/7421483-7422814	AT1G21200.1  CDS  gene_syn F16F4.11, F16F4_11  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76870.1); Has 251 Blast hits to 233 proteins in 48 species: Archae - 2; Bacteria - 24; Metazoa - 66; Fungi - 2; Plants - 75; Viruses - 9; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT1G21200.1p  transcript_id AT1G21200.1  protein_id AT1G21200.1p  transcript_id AT1G21200.1  
At1g21202	chr1:007423518	0.0	W/7423518-7423611	AT1G21202.1  miRNA  gene_syn MICRORNA781A, MIR781A  gene MIR781A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUAGAGUUUUCUGGAUACUUA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR781A (MICRORNA781A); miRNA  transcript_id AT1G21202.1  
At1g21210	chr1:007424653	0.0	W/7424653-7425487,7425585-7425770,7425846-7427041	AT1G21210.1  CDS  gene_syn F16F4.10, F16F4_10, WAK4, wall associated kinase 4  gene WAK4  function cell wall-associated ser/thr kinase involved in cell elongation and lateral root development  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_component plasma membrane|GO:0005886|10380805|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process unidimensional cell growth|GO:0009826|11402163|IMP  go_process lateral root development|GO:0048527|11402163|IMP  go_function protein serine/threonine kinase activity|GO:0004674||ISS  product WAK4 (wall associated kinase 4); ATP binding / calcium ion binding / protein kinase/ protein serine/threonine kinase  note wall associated kinase 4 (WAK4); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding, calcium ion binding; INVOLVED IN: protein amino acid phosphorylation, unidimensional cell growth, lateral root development; LOCATED IN: plasma membrane; EXPRESSED IN: root, trichome; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EGF-like calcium-binding (InterPro:IPR001881), EGF-like, type 3 (InterPro:IPR000742), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), EGF-like region, conserved site (InterPro:IPR013032), Protein kinase, core (InterPro:IPR000719), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-type aspartate/asparagine hydroxylation conserved site (InterPro:IPR000152), EGF calcium-binding (InterPro:IPR013091), EGF (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: WAK2; ATP binding / calcium ion binding / protein kinase/ protein serine/threonine kinase (TAIR:AT1G21270.1); Has 95547 Blast hits to 88449 proteins in 3309 species: Archae - 60; Bacteria - 7790; Metazoa - 47405; Fungi - 6411; Plants - 18825; Viruses - 397; Other Eukaryotes - 14659 (source: NCBI BLink).  protein_id AT1G21210.1p  transcript_id AT1G21210.1  protein_id AT1G21210.1p  transcript_id AT1G21210.1  
At1g21220	chr1:007428112	0.0	C/7428112-7428930	AT1G21220.1  mRNA_TE_gene  pseudo  gene_syn F16F4.18, F16F4_18  note Transposable element gene, copia-like retrotransposon family, has a 3.9e-26 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At1g21230	chr1:007429980	0.0	W/7429980-7430814,7430895-7431074,7431160-7432346	AT1G21230.1  CDS  gene_syn F16F4.9, F16F4_9, WAK5, WALL ASSOCIATED KINASE 5  gene WAK5  function encodes a wall-associated kinase  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component plasma membrane|GO:0005886|10380805|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function kinase activity|GO:0016301||ISS  product WAK5 (WALL ASSOCIATED KINASE 5); kinase/ protein serine/threonine kinase  note WALL ASSOCIATED KINASE 5 (WAK5); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EGF-like calcium-binding (InterPro:IPR001881), EGF-like, type 3 (InterPro:IPR000742), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), EGF-like region, conserved site (InterPro:IPR013032), Protein kinase, core (InterPro:IPR000719), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-type aspartate/asparagine hydroxylation conserved site (InterPro:IPR000152), EGF calcium-binding (InterPro:IPR013091), EGF (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: WAK1 (CELL WALL-ASSOCIATED KINASE); kinase (TAIR:AT1G21250.1); Has 102231 Blast hits to 89629 proteins in 3285 species: Archae - 60; Bacteria - 7789; Metazoa - 53821; Fungi - 6393; Plants - 18893; Viruses - 398; Other Eukaryotes - 14877 (source: NCBI BLink).  protein_id AT1G21230.1p  transcript_id AT1G21230.1  protein_id AT1G21230.1p  transcript_id AT1G21230.1  
At1g21240	chr1:007434303	0.0	W/7434303-7435179,7435281-7435439,7435513-7436702	AT1G21240.1  CDS  gene_syn F16F4.8, F16F4_8, WAK3, wall associated kinase 3  gene WAK3  function encodes a wall-associated kinase  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component plasma membrane|GO:0005886|10380805|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function kinase activity|GO:0016301||ISS  product WAK3 (wall associated kinase 3); kinase/ protein serine/threonine kinase  note wall associated kinase 3 (WAK3); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EGF-like calcium-binding (InterPro:IPR001881), EGF-like, type 3 (InterPro:IPR000742), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), EGF-like region, conserved site (InterPro:IPR013032), Protein kinase, core (InterPro:IPR000719), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-type aspartate/asparagine hydroxylation conserved site (InterPro:IPR000152), EGF calcium-binding (InterPro:IPR013091), EGF (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: WAK1 (CELL WALL-ASSOCIATED KINASE); kinase (TAIR:AT1G21250.1); Has 102592 Blast hits to 89688 proteins in 3362 species: Archae - 64; Bacteria - 7769; Metazoa - 54419; Fungi - 6353; Plants - 18768; Viruses - 408; Other Eukaryotes - 14811 (source: NCBI BLink).  protein_id AT1G21240.1p  transcript_id AT1G21240.1  protein_id AT1G21240.1p  transcript_id AT1G21240.1  
At1g21245	chr1:007436842	0.0	W/7436842-7437342	AT1G21245.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  product wall-associated kinase-related  note wall-associated kinase-related; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: WAK3 (wall associated kinase 3); kinase/ protein serine/threonine kinase (TAIR:AT1G21240.1); Has 10503 Blast hits to 10363 proteins in 297 species: Archae - 0; Bacteria - 191; Metazoa - 223; Fungi - 0; Plants - 10024; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT1G21245.1p  transcript_id AT1G21245.1  protein_id AT1G21245.1p  transcript_id AT1G21245.1  
At1g21250	chr1:007439512	0.0	W/7439512-7440355,7440441-7440614,7440703-7441892	AT1G21250.1  CDS  gene_syn CELL WALL-ASSOCIATED KINASE, F16F4.6, F16F4_6, PRO25, SERINE THREONINE KINASE, WAK1  gene WAK1  function cell wall-associated kinase, may function as a signaling receptor of extracellular matrix component.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|10380805|IDA  go_component plasma membrane|GO:0005886|11554472|ISS  go_component plant-type cell wall|GO:0009505|8702686|IDA  go_process cell surface receptor linked signal transduction|GO:0007166|11335717|IPI  go_process response to salicylic acid stimulus|GO:0009751|16307367|IEP  go_function kinase activity|GO:0016301|8702686|ISS  go_function kinase activity|GO:0016301||ISS  product WAK1 (CELL WALL-ASSOCIATED KINASE); kinase  note CELL WALL-ASSOCIATED KINASE (WAK1); FUNCTIONS IN: kinase activity; INVOLVED IN: cell surface receptor linked signal transduction, response to salicylic acid stimulus; LOCATED IN: plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EGF-like calcium-binding (InterPro:IPR001881), EGF-like, type 3 (InterPro:IPR000742), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), EGF-like region, conserved site (InterPro:IPR013032), Protein kinase, core (InterPro:IPR000719), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-type aspartate/asparagine hydroxylation conserved site (InterPro:IPR000152), EGF calcium-binding (InterPro:IPR013091), EGF (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: WAK3 (wall associated kinase 3); kinase/ protein serine/threonine kinase (TAIR:AT1G21240.1); Has 97003 Blast hits to 87938 proteins in 3273 species: Archae - 58; Bacteria - 7636; Metazoa - 49432; Fungi - 6249; Plants - 18663; Viruses - 405; Other Eukaryotes - 14560 (source: NCBI BLink).  protein_id AT1G21250.1p  transcript_id AT1G21250.1  protein_id AT1G21250.1p  transcript_id AT1G21250.1  
At1g21260	chr1:007442218	0.0	C/7442218-7442979	AT1G21260.1  mRNA_TE_gene  pseudo  gene_syn F16F4.17  note Transposable element gene, copia-like retrotransposon family, has a 2.4e-23 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At1g21270	chr1:007444997	0.0	W/7444997-7445828,7445903-7446073,7446150-7447345	AT1G21270.1  CDS  gene_syn F16F4.5, F16F4_5, WAK2  gene WAK2  function cytoplasmic serine/threonine protein kinase induced by salicylic acid. mutant plants exhibit a loss of cell expansion and dependence on sugars and salts for seedling growth, affecting the expression and activity of vacuolar invertase.  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_component plasma membrane|GO:0005886|10380805|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process oligosaccharide metabolic process|GO:0009311|16623892|IMP  go_process response to salicylic acid stimulus|GO:0009751|10380805|IDA  go_process unidimensional cell growth|GO:0009826|16623892|IMP  go_process cellular water homeostasis|GO:0009992|16623892|IDA  go_process cellular water homeostasis|GO:0009992|16623892|IMP  go_function protein serine/threonine kinase activity|GO:0004674||ISS  product WAK2; ATP binding / calcium ion binding / protein kinase/ protein serine/threonine kinase  note WAK2; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, calcium ion binding, ATP binding; INVOLVED IN: cellular water homeostasis, protein amino acid phosphorylation, oligosaccharide metabolic process, unidimensional cell growth, response to salicylic acid stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EGF-like calcium-binding (InterPro:IPR001881), EGF-like, type 3 (InterPro:IPR000742), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), EGF-like region, conserved site (InterPro:IPR013032), Protein kinase, core (InterPro:IPR000719), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-type aspartate/asparagine hydroxylation conserved site (InterPro:IPR000152), EGF calcium-binding (InterPro:IPR013091), EGF (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: WAK5 (WALL ASSOCIATED KINASE 5); kinase/ protein serine/threonine kinase (TAIR:AT1G21230.1); Has 105918 Blast hits to 90525 proteins in 3329 species: Archae - 64; Bacteria - 7752; Metazoa - 57550; Fungi - 6394; Plants - 18825; Viruses - 406; Other Eukaryotes - 14927 (source: NCBI BLink).  protein_id AT1G21270.1p  transcript_id AT1G21270.1  protein_id AT1G21270.1p  transcript_id AT1G21270.1  
At1g21280	chr1:007447690	0.0	C/7447690-7448403	AT1G21280.1  CDS  gene_syn F16F4.14, F16F4_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 594 Blast hits to 592 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 590; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21280.1p  transcript_id AT1G21280.1  protein_id AT1G21280.1p  transcript_id AT1G21280.1  
At1g21281	chr1:007448552	0.0	W/7448552-7448683	AT1G21281.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G21281.1p  transcript_id AT1G21281.1  protein_id AT1G21281.1p  transcript_id AT1G21281.1  
At1g21286	chr1:007449472	0.0	W/7449472-7449664	AT1G21286.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G21245; wall-associated kinase-related protein  
At1g21290	chr1:007449964	0.0	C/7449964-7450695	AT1G21290.1  mRNA_TE_gene  pseudo  gene_syn F16F4.15, F16F4_15  note Transposable element gene, copia-like retrotransposon family, has a 3.7e-25 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At1g21300	chr1:007451150	0.0	C/7451150-7451707	AT1G21300.1  mRNA_TE_gene  pseudo  gene_syn F16F4.16, F16F4_16  note Transposable element gene, copia-like retrotransposon family, has a 3.9e-15 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At1g21310	chr1:007453693	0.0	C/7453693-7454988	AT1G21310.1  CDS  gene_syn ATEXT3, EXTENSIN 3, F16F4.4, F16F4_4, ROOT-SHOOT-HYPOCOTYL DEFECTIVE, RSH  gene ATEXT3  function Encodes extensin 3.  go_component endomembrane system|GO:0012505||IEA  go_process plant-type cell wall organization|GO:0009664||IEA  go_function structural constituent of cell wall|GO:0005199|12034904|IDA  product ATEXT3 (EXTENSIN 3); structural constituent of cell wall  note EXTENSIN 3 (ATEXT3); FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Extensin-like region (InterPro:IPR006706); Has 130013 Blast hits to 22783 proteins in 972 species: Archae - 256; Bacteria - 14806; Metazoa - 53857; Fungi - 20293; Plants - 20206; Viruses - 4126; Other Eukaryotes - 16469 (source: NCBI BLink).  protein_id AT1G21310.1p  transcript_id AT1G21310.1  protein_id AT1G21310.1p  transcript_id AT1G21310.1  
At1g21320	chr1:007464600	0.0	C/7464600-7465200,7463837-7463970,7463467-7463752,7463320-7463381,7463141-7463222,7462834-7462934	AT1G21320.1  CDS  gene_syn F16F4.3, F16F4_3  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding / nucleotide binding  note nucleic acid binding / nucleotide binding; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT1G21326.1); Has 556 Blast hits to 556 proteins in 110 species: Archae - 0; Bacteria - 10; Metazoa - 279; Fungi - 97; Plants - 122; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT1G21320.1p  transcript_id AT1G21320.1  protein_id AT1G21320.1p  transcript_id AT1G21320.1  
At1g21320	chr1:007466068	0.0	C/7466068-7466164,7463837-7463970,7463467-7463752,7463320-7463381,7463141-7463222,7462834-7462934	AT1G21320.2  CDS  gene_syn F16F4.3, F16F4_3  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding / nucleotide binding  note nucleic acid binding / nucleotide binding; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT1G76940.1).  protein_id AT1G21320.2p  transcript_id AT1G21320.2  protein_id AT1G21320.2p  transcript_id AT1G21320.2  
At1g21323	chr1:007466694	0.0	W/7466694-7466834,7466918-7467053,7467250-7467359	AT1G21323.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21323.1p  transcript_id AT1G21323.1  protein_id AT1G21323.1p  transcript_id AT1G21323.1  
At1g21326	chr1:007469002	0.0	C/7469002-7469721	AT1G21326.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product VQ motif-containing protein  note VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: nucleic acid binding / nucleotide binding (TAIR:AT1G21320.1); Has 213 Blast hits to 213 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 20; Plants - 66; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G21326.1p  transcript_id AT1G21326.1  protein_id AT1G21326.1p  transcript_id AT1G21326.1  
At1g21327	chr1:007471947	0.0	C/7471947-7472210	AT1G21327.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G21327.1p  transcript_id AT1G21327.1  protein_id AT1G21327.1p  transcript_id AT1G21327.1  
At1g21330	chr1:007474703	0.0	W/7474703-7475683	AT1G21330.1  mRNA_TE_gene  pseudo  gene_syn F24J8.25, F24J8_25  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G40680.1); similar to hypothetical protein 23.t00046 [Brassica oleracea] (GB:ABD65629.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446)  
At1g21340	chr1:007476087	0.0	W/7476087-7476869	AT1G21340.1  CDS  gene_syn F24J8.23, F24J8_23  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product Dof-type zinc finger domain-containing protein  note Dof-type zinc finger domain-containing protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT3G52440.1); Has 618 Blast hits to 614 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 613; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G21340.1p  transcript_id AT1G21340.1  protein_id AT1G21340.1p  transcript_id AT1G21340.1  
At1g21350	chr1:007478442	0.0	C/7478442-7478519,7478315-7478368,7478164-7478232,7478008-7478070,7477638-7477720,7477498-7477563,7477376-7477418	AT1G21350.1  CDS  gene_syn F24J8.1, F24J8_1  go_component chloroplast|GO:0009507|18431481|IDA  go_function antioxidant activity|GO:0016209||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product antioxidant/ oxidoreductase  note antioxidant/ oxidoreductase; FUNCTIONS IN: oxidoreductase activity, antioxidant activity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like fold (InterPro:IPR012336); Has 2328 Blast hits to 2328 proteins in 231 species: Archae - 18; Bacteria - 470; Metazoa - 4; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 1810 (source: NCBI BLink).  protein_id AT1G21350.1p  transcript_id AT1G21350.1  protein_id AT1G21350.1p  transcript_id AT1G21350.1  
At1g21350	chr1:007478779	0.0	C/7478779-7479012,7478617-7478682,7478315-7478368,7478164-7478232,7478008-7478070,7477638-7477720,7477498-7477563,7477376-7477418	AT1G21350.2  CDS  gene_syn F24J8.1, F24J8_1  go_component chloroplast|GO:0009507|18431481|IDA  go_function antioxidant activity|GO:0016209||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product antioxidant/ oxidoreductase  note antioxidant/ oxidoreductase; FUNCTIONS IN: oxidoreductase activity, antioxidant activity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like fold (InterPro:IPR012336); Has 2185 Blast hits to 2185 proteins in 230 species: Archae - 18; Bacteria - 464; Metazoa - 4; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 1673 (source: NCBI BLink).  protein_id AT1G21350.2p  transcript_id AT1G21350.2  protein_id AT1G21350.2p  transcript_id AT1G21350.2  
At1g21350	chr1:007478779	0.0	C/7478779-7479012,7478617-7478682,7478442-7478522,7478315-7478368,7478164-7478232,7478008-7478070,7477638-7477720,7477498-7477563,7477376-7477418	AT1G21350.3  CDS  gene_syn F24J8.1, F24J8_1  go_component chloroplast|GO:0009507|18431481|IDA  go_process cell redox homeostasis|GO:0045454||IEA  go_function antioxidant activity|GO:0016209||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product antioxidant/ oxidoreductase  note antioxidant/ oxidoreductase; FUNCTIONS IN: oxidoreductase activity, antioxidant activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); Has 2431 Blast hits to 2431 proteins in 245 species: Archae - 18; Bacteria - 506; Metazoa - 4; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 1877 (source: NCBI BLink).  protein_id AT1G21350.3p  transcript_id AT1G21350.3  protein_id AT1G21350.3p  transcript_id AT1G21350.3  
At1g21360	chr1:007481365	0.0	W/7481365-7481533,7481680-7481735,7482135-7482265,7482599-7482734,7482912-7483055,7483202-7483237	AT1G21360.1  CDS  gene_syn F24J8.2, F24J8_2, GLTP2, glycolipid transfer protein 2  gene GLTP2  go_component cytoplasm|GO:0005737||IEA  go_process glycolipid transport|GO:0046836||IEA  go_function glycolipid transporter activity|GO:0017089||IEA  go_function glycolipid binding|GO:0051861||IEA  product GLTP2 (glycolipid transfer protein 2); glycolipid binding / glycolipid transporter  note glycolipid transfer protein 2 (GLTP2); FUNCTIONS IN: glycolipid transporter activity, glycolipid binding; INVOLVED IN: glycolipid transport; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Glycolipid transfer protein, GLTP (InterPro:IPR014830); BEST Arabidopsis thaliana protein match is: glycolipid transfer protein-related (TAIR:AT3G21260.3); Has 32 Blast hits to 26 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21360.1p  transcript_id AT1G21360.1  protein_id AT1G21360.1p  transcript_id AT1G21360.1  
At1g21370	chr1:007484250	0.0	W/7484250-7484838,7484920-7485041,7485134-7485451	AT1G21370.1  CDS  gene_syn F24J8.26, F24J8_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 97 Blast hits to 97 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 67; Plants - 22; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G21370.1p  transcript_id AT1G21370.1  protein_id AT1G21370.1p  transcript_id AT1G21370.1  
At1g21370	chr1:007484250	0.0	W/7484250-7484838,7484920-7485041,7485134-7485451	AT1G21370.2  CDS  gene_syn F24J8.26, F24J8_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 97 Blast hits to 97 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 67; Plants - 22; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G21370.2p  transcript_id AT1G21370.2  protein_id AT1G21370.2p  transcript_id AT1G21370.2  
At1g21380	chr1:007487923	0.0	C/7487923-7488032,7487744-7487822,7487563-7487661,7487360-7487473,7487126-7487277,7486949-7487030,7486781-7486866,7486496-7486684,7485806-7486415	AT1G21380.1  CDS  gene_syn F24J8.3, F24J8_3  go_component intracellular|GO:0005622||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_component Golgi stack|GO:0005795||ISS  go_process intracellular protein transport|GO:0006886||ISS  go_process intra-Golgi vesicle-mediated transport|GO:0006891||ISS  go_function protein transporter activity|GO:0008565||ISS  product VHS domain-containing protein / GAT domain-containing protein  note VHS domain-containing protein / GAT domain-containing protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), Target of Myb protein 1 (InterPro:IPR014645), GAT (InterPro:IPR004152), VHS subgroup (InterPro:IPR018205), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: VHS domain-containing protein / GAT domain-containing protein (TAIR:AT1G76970.1); Has 1297 Blast hits to 1295 proteins in 140 species: Archae - 0; Bacteria - 6; Metazoa - 767; Fungi - 311; Plants - 152; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT1G21380.1p  transcript_id AT1G21380.1  protein_id AT1G21380.1p  transcript_id AT1G21380.1  
At1g21390	chr1:007489905	0.0	C/7489905-7490554,7489385-7489481	AT1G21390.1  CDS  gene_syn F24J8.30, F24J8_30, emb2170, embryo defective 2170  gene emb2170  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product emb2170 (embryo defective 2170)  note embryo defective 2170 (emb2170); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76980.2); Has 24 Blast hits to 24 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G21390.1p  transcript_id AT1G21390.1  protein_id AT1G21390.1p  transcript_id AT1G21390.1  
At1g21395	chr1:007492011	0.0	W/7492011-7492232	AT1G21395.1  CDS  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G26865.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21395.1p  transcript_id AT1G21395.1  protein_id AT1G21395.1p  transcript_id AT1G21395.1  
At1g21400	chr1:007493492	0.0	W/7493492-7493725,7494444-7494581,7494663-7494845,7494923-7495080,7495167-7495266,7495366-7495477,7495572-7495711,7495801-7495986,7496073-7496240	AT1G21400.1  CDS  gene_syn F24J8.4, F24J8_4  go_process metabolic process|GO:0008152||IEA  go_function oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor|GO:0016624||IEA  go_process metabolic process|GO:0008152||ISS  go_function 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity|GO:0003863||ISS  product 2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative  note 2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative; FUNCTIONS IN: oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity; INVOLVED IN: metabolic process; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Dehydrogenase, E1 component (InterPro:IPR001017); BEST Arabidopsis thaliana protein match is: 2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative (TAIR:AT5G09300.1); Has 6104 Blast hits to 6100 proteins in 1082 species: Archae - 46; Bacteria - 3071; Metazoa - 464; Fungi - 157; Plants - 112; Viruses - 0; Other Eukaryotes - 2254 (source: NCBI BLink).  protein_id AT1G21400.1p  transcript_id AT1G21400.1  protein_id AT1G21400.1p  transcript_id AT1G21400.1  
At1g21410	chr1:007497479	0.0	W/7497479-7497696,7498245-7498593,7498698-7498839,7499013-7499386	AT1G21410.1  CDS  gene_syn F24J8.5, F24J8_5, SKP2A  gene SKP2A  function AtSKP2;1 is a homolog of human SKP2, the human F-box protein that recruits E2F1. Contains an F-box motif at the N-terminal region and a C-terminal Leu-rich repeat domain. Forms part of an E3-ubiquitin-ligase SCF (Skp1, cullin, F-box) complex and recruits phosphorylated AtE2Fc, a transcriptional factor that might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis. AtSKP2;1 (At1g21410) and AtSKP2;2 (At1g77000) may be duplicated genes.  go_component SCF ubiquitin ligase complex|GO:0019005|12468727|IPI  go_process SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|GO:0031146|12468727|IPI  product SKP2A  note SKP2A; INVOLVED IN: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; LOCATED IN: SCF ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: SKP2B; ubiquitin-protein ligase (TAIR:AT1G77000.1); Has 6378 Blast hits to 2794 proteins in 176 species: Archae - 0; Bacteria - 326; Metazoa - 3115; Fungi - 704; Plants - 1573; Viruses - 9; Other Eukaryotes - 651 (source: NCBI BLink).  protein_id AT1G21410.1p  transcript_id AT1G21410.1  protein_id AT1G21410.1p  transcript_id AT1G21410.1  
At1g21420	chr1:007499733	0.0	C/7499733-7499804	AT1G21420.1  tRNA  gene_syn 52094.TRNA-GLN-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gln (anticodon: TTG)  transcript_id AT1G21420.1  
At1g21430	chr1:007500845	0.0	W/7500845-7501462,7501549-7501905,7501986-7502186	AT1G21430.1  CDS  gene_syn F24J8.6, F24J8_6, YUC11  gene YUC11  go_component membrane|GO:0016020|17432890|IDA  go_function monooxygenase activity|GO:0004497||IEA  go_function flavin-containing monooxygenase activity|GO:0004499||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_process anatomical structure morphogenesis|GO:0009653|17704214|IGI  go_function monooxygenase activity|GO:0004497||ISS  product YUC11; FAD binding / NADP or NADPH binding / flavin-containing monooxygenase/ monooxygenase/ oxidoreductase  note YUC11; FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, FAD binding, monooxygenase activity, flavin-containing monooxygenase activity; INVOLVED IN: anatomical structure morphogenesis; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960), Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Monooxygenase, FAD-binding (InterPro:IPR002938); BEST Arabidopsis thaliana protein match is: YUC10; FAD binding / monooxygenase/ oxidoreductase (TAIR:AT1G48910.1); Has 6214 Blast hits to 6207 proteins in 756 species: Archae - 13; Bacteria - 2911; Metazoa - 658; Fungi - 793; Plants - 327; Viruses - 0; Other Eukaryotes - 1512 (source: NCBI BLink).  protein_id AT1G21430.1p  transcript_id AT1G21430.1  protein_id AT1G21430.1p  transcript_id AT1G21430.1  
At1g21440	chr1:007503817	0.0	C/7503817-7504103,7503663-7503736,7503385-7503467,7503174-7503198,7503045-7503064,7502781-7502936,7502325-7502690	AT1G21440.1  CDS  gene_syn F24J8.7, F24J8_7  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function isocitrate lyase activity|GO:0004451||ISS  product mutase family protein  note mutase family protein; FUNCTIONS IN: isocitrate lyase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Isocitrate lyase and phosphorylmutase, conserved site (InterPro:IPR018523), Isocitrate lyase and phosphorylmutase (InterPro:IPR000918); BEST Arabidopsis thaliana protein match is: mutase family protein (TAIR:AT1G77060.1); Has 6447 Blast hits to 6447 proteins in 860 species: Archae - 75; Bacteria - 2907; Metazoa - 29; Fungi - 322; Plants - 109; Viruses - 0; Other Eukaryotes - 3005 (source: NCBI BLink).  protein_id AT1G21440.1p  transcript_id AT1G21440.1  protein_id AT1G21440.1p  transcript_id AT1G21440.1  
At1g21450	chr1:007509721	0.0	W/7509721-7511502	AT1G21450.1  CDS  gene_syn F24J8.8, F24J8_8, SCARECROW-LIKE 1, SCL1  gene SCL1  function Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family.  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product SCL1 (SCARECROW-LIKE 1); transcription factor  note SCARECROW-LIKE 1 (SCL1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: PAT1 (phytochrome a signal transduction 1); signal transducer/ transcription factor (TAIR:AT5G48150.2); Has 1379 Blast hits to 1357 proteins in 190 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 1374; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G21450.1p  transcript_id AT1G21450.1  protein_id AT1G21450.1p  transcript_id AT1G21450.1  
At1g21460	chr1:007513248	0.0	C/7513248-7513281,7513094-7513130,7512883-7512978,7512507-7512786,7512294-7512413,7512030-7512206	AT1G21460.1  CDS  gene_syn F24J8.9, F24J8_9  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  product nodulin MtN3 family protein  note nodulin MtN3 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: MtN3 and saliva related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), MtN3 and saliva related transmembrane protein (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: nodulin MtN3 family protein (TAIR:AT4G10850.1); Has 572 Blast hits to 531 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 215; Fungi - 0; Plants - 300; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT1G21460.1p  transcript_id AT1G21460.1  protein_id AT1G21460.1p  transcript_id AT1G21460.1  
At1g21470	chr1:007516970	0.0	C/7516970-7517179,7516709-7516855	AT1G21470.1  CDS  gene_syn F24J8.28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: CLPC1; ATP binding / ATP-dependent peptidase/ ATPase (TAIR:AT5G50920.1).  protein_id AT1G21470.1p  transcript_id AT1G21470.1  protein_id AT1G21470.1p  transcript_id AT1G21470.1  
At1g21480	chr1:007521049	0.0	C/7521049-7521426,7520772-7520918,7520600-7520664,7520431-7520500,7519955-7520173,7519676-7519819,7519372-7519581	AT1G21480.2  CDS  gene_syn F24J8.10, F24J8_10  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product exostosin family protein  note exostosin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: F8H (FRA8 HOMOLOG); catalytic (TAIR:AT5G22940.1); Has 666 Blast hits to 663 proteins in 81 species: Archae - 0; Bacteria - 2; Metazoa - 162; Fungi - 4; Plants - 431; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT1G21480.2p  transcript_id AT1G21480.2  protein_id AT1G21480.2p  transcript_id AT1G21480.2  
At1g21480	chr1:007521049	0.0	C/7521049-7521426,7520772-7520918,7520600-7520664,7520431-7520500,7519955-7520173,7519676-7519819,7519446-7519581,7519116-7519345	AT1G21480.1  CDS  gene_syn F24J8.10, F24J8_10  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product exostosin family protein  note exostosin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: F8H (FRA8 HOMOLOG); catalytic (TAIR:AT5G22940.1); Has 756 Blast hits to 751 proteins in 84 species: Archae - 0; Bacteria - 6; Metazoa - 221; Fungi - 4; Plants - 446; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT1G21480.1p  transcript_id AT1G21480.1  protein_id AT1G21480.1p  transcript_id AT1G21480.1  
At1g21475	chr1:007524086	0.0	C/7524086-7524631	AT1G21475.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G07350.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21475.1p  transcript_id AT1G21475.1  protein_id AT1G21475.1p  transcript_id AT1G21475.1  
At1g21490	chr1:007527079	0.0	C/7527079-7528202	AT1G21490.1  pseudogenic_transcript  pseudo  gene_syn F24J8.27  note pseudogene, hypothetical protein  
At1g21500	chr1:007530830	0.0	C/7530830-7530954,7530047-7530302	AT1G21500.1  CDS  gene_syn F24J8.11, F24J8_11  go_component 1-phosphatidylinositol-4-phosphate 3-kinase, class IA complex|GO:0005943|11719511|ISS  product unknown protein  note unknown protein; LOCATED IN: 1-phosphatidylinositol-4-phosphate 3-kinase, class IA complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 14 Blast hits to 14 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21500.1p  transcript_id AT1G21500.1  protein_id AT1G21500.1p  transcript_id AT1G21500.1  
At1g21510	chr1:007531534	0.0	C/7531534-7532505	AT1G21510.1  CDS  gene_syn F24J8.12, F24J8_12  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon; Has 409 Blast hits to 274 proteins in 50 species: Archae - 0; Bacteria - 2; Metazoa - 304; Fungi - 35; Plants - 4; Viruses - 5; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT1G21510.1p  transcript_id AT1G21510.1  protein_id AT1G21510.1p  transcript_id AT1G21510.1  
At1g21520	chr1:007534533	0.0	C/7534533-7534733	AT1G21520.1  CDS  gene_syn F24J8.16, F24J8_16  go_component endoplasmic reticulum|GO:0005783|18614705|IMP  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_process response to salt stress|GO:0009651|11351099|IEP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress, response to salt stress; LOCATED IN: endoplasmic reticulum; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21520.1p  transcript_id AT1G21520.1  protein_id AT1G21520.1p  transcript_id AT1G21520.1  
At1g21525	chr1:007537087	0.0	C/7537087-7537649	AT1G21525.1  pseudogenic_transcript  pseudo  function pseudogene of unknown protein  note expressed protein  
At1g21528	chr1:007542830	0.0	C/7542830-7543039	AT1G21528.1  CDS  product unknown protein  note unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21528.1p  transcript_id AT1G21528.1  protein_id AT1G21528.1p  transcript_id AT1G21528.1  
At1g21530	chr1:007546037	0.0	C/7546037-7546936,7545151-7545900	AT1G21530.2  CDS  gene_syn F24J8.13, F24J8_13  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  product AMP-binding protein, putative  note AMP-binding protein, putative; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-binding protein, putative (TAIR:AT1G21540.1); Has 50537 Blast hits to 46860 proteins in 2232 species: Archae - 556; Bacteria - 27515; Metazoa - 2901; Fungi - 2357; Plants - 1239; Viruses - 1; Other Eukaryotes - 15968 (source: NCBI BLink).  protein_id AT1G21530.2p  transcript_id AT1G21530.2  protein_id AT1G21530.2p  transcript_id AT1G21530.2  
At1g21530	chr1:007546043	0.0	C/7546043-7546936,7545151-7545900	AT1G21530.1  CDS  gene_syn F24J8.13, F24J8_13  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  product AMP-binding protein, putative  note AMP-binding protein, putative; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-binding protein, putative (TAIR:AT1G21540.1); Has 50597 Blast hits to 46775 proteins in 2232 species: Archae - 558; Bacteria - 27529; Metazoa - 2934; Fungi - 2384; Plants - 1276; Viruses - 1; Other Eukaryotes - 15915 (source: NCBI BLink).  protein_id AT1G21530.1p  transcript_id AT1G21530.1  protein_id AT1G21530.1p  transcript_id AT1G21530.1  
At1g21540	chr1:007549613	0.0	C/7549613-7550521,7548758-7549501	AT1G21540.1  CDS  gene_syn F24J8.14, F24J8_14  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  product AMP-binding protein, putative  note AMP-binding protein, putative; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-binding protein, putative (TAIR:AT1G21530.2); Has 50553 Blast hits to 47005 proteins in 2235 species: Archae - 550; Bacteria - 27715; Metazoa - 2872; Fungi - 2366; Plants - 1252; Viruses - 1; Other Eukaryotes - 15797 (source: NCBI BLink).  protein_id AT1G21540.1p  transcript_id AT1G21540.1  protein_id AT1G21540.1p  transcript_id AT1G21540.1  
At1g21550	chr1:007553317	0.0	C/7553317-7553784	AT1G21550.1  CDS  gene_syn F24J8.15, F24J8_15  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding protein, putative  note calcium-binding protein, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding protein, putative (TAIR:AT4G20780.1); Has 6890 Blast hits to 6643 proteins in 978 species: Archae - 0; Bacteria - 10; Metazoa - 2533; Fungi - 1210; Plants - 1972; Viruses - 0; Other Eukaryotes - 1165 (source: NCBI BLink).  protein_id AT1G21550.1p  transcript_id AT1G21550.1  protein_id AT1G21550.1p  transcript_id AT1G21550.1  
At1g21560	chr1:007555430	0.0	W/7555430-7556032,7556132-7556348,7556540-7556628,7556721-7556789	AT1G21560.1  CDS  gene_syn F24J8.19, F24J8_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01170.1); Has 40 Blast hits to 40 proteins in 7 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21560.1p  transcript_id AT1G21560.1  protein_id AT1G21560.1p  transcript_id AT1G21560.1  
At1g21570	chr1:007560093	0.0	C/7560093-7560283,7559850-7560000,7559649-7559745,7559439-7559513,7559115-7559205,7558761-7559031,7558644-7558686,7558475-7558578,7557822-7558211	AT1G21570.1  CDS  gene_syn F24J8.21, F24J8_21  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc finger (CCCH-type) family protein  note zinc finger (CCCH-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: CPSF30; RNA binding / calmodulin binding / endonuclease/ nucleic acid binding / protein binding (TAIR:AT1G30460.2); Has 862 Blast hits to 698 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 435; Fungi - 213; Plants - 136; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT1G21570.1p  transcript_id AT1G21570.1  protein_id AT1G21570.1p  transcript_id AT1G21570.1  
At1g21580	chr1:007560565	0.0	C/7560565-7565655	AT1G21580.1  CDS  gene_syn F24J8.17, F24J8_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 5883 Blast hits to 3865 proteins in 351 species: Archae - 2; Bacteria - 340; Metazoa - 2117; Fungi - 809; Plants - 1304; Viruses - 149; Other Eukaryotes - 1162 (source: NCBI BLink).  protein_id AT1G21580.1p  transcript_id AT1G21580.1  protein_id AT1G21580.1p  transcript_id AT1G21580.1  
At1g21590	chr1:007569544	0.0	C/7569544-7569694,7569360-7569457,7569032-7569281,7568197-7568931,7567844-7568092,7567601-7567764,7567441-7567520,7567203-7567350,7566963-7567112,7566613-7566858	AT1G21590.1  CDS  gene_syn F24J8.18, F24J8_18  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process response to stress|GO:0006950||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G77280.1); Has 84729 Blast hits to 83750 proteins in 2437 species: Archae - 54; Bacteria - 7550; Metazoa - 36860; Fungi - 6770; Plants - 18542; Viruses - 399; Other Eukaryotes - 14554 (source: NCBI BLink).  protein_id AT1G21590.1p  transcript_id AT1G21590.1  protein_id AT1G21590.1p  transcript_id AT1G21590.1  
At1g21600	chr1:007573297	0.0	C/7573297-7573782,7573128-7573196,7572476-7572580,7572122-7572241,7571742-7571831,7571514-7571630	AT1G21600.1  CDS  gene_syn F24J8.20, PLASTID TRANSCRIPTIONALLY ACTIVE6, PTAC6  gene PTAC6  function Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.  go_component nucleoid|GO:0009295|16326926|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component plastid chromosome|GO:0009508|16326926|IDA  go_process transcription from plastid promoter|GO:0042793|16326926|IMP  go_process positive regulation of transcription, DNA-dependent|GO:0045893|16326926|IMP  go_function molecular_function|GO:0003674||ND  product PTAC6 (PLASTID TRANSCRIPTIONALLY ACTIVE6)  note PLASTID TRANSCRIPTIONALLY ACTIVE6 (PTAC6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: positive regulation of transcription, DNA-dependent, transcription from plastid promoter; LOCATED IN: plastid chromosome, chloroplast, nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 25 Blast hits to 25 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21600.1p  transcript_id AT1G21600.1  protein_id AT1G21600.1p  transcript_id AT1G21600.1  
At1g21600	chr1:007573297	0.0	C/7573297-7573782,7573128-7573196,7572476-7572580,7572122-7572241,7571742-7571831,7571514-7571630	AT1G21600.2  CDS  gene_syn F24J8.20, PLASTID TRANSCRIPTIONALLY ACTIVE6, PTAC6  gene PTAC6  function Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.  go_component nucleoid|GO:0009295|16326926|IDA  go_component plastid chromosome|GO:0009508|16326926|IDA  go_process transcription from plastid promoter|GO:0042793|16326926|IMP  go_process positive regulation of transcription, DNA-dependent|GO:0045893|16326926|IMP  go_function molecular_function|GO:0003674||ND  product PTAC6 (PLASTID TRANSCRIPTIONALLY ACTIVE6)  note PLASTID TRANSCRIPTIONALLY ACTIVE6 (PTAC6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: positive regulation of transcription, DNA-dependent, transcription from plastid promoter; LOCATED IN: plastid chromosome, nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 25 Blast hits to 25 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21600.2p  transcript_id AT1G21600.2  protein_id AT1G21600.2p  transcript_id AT1G21600.2  
At1g21610	chr1:007574104	0.0	W/7574104-7574343,7574956-7575042,7575193-7575285,7575359-7575435,7575831-7575957,7576039-7576380,7576585-7576666,7576752-7576864,7576949-7577035,7577221-7577346,7577628-7577756,7577849-7577896,7578052-7578162,7578251-7578643	AT1G21610.1  CDS  gene_syn F24J8.24  go_component cellular_component|GO:0005575||ND  go_process response to wounding|GO:0009611||ISS  go_function molecular_function|GO:0003674||ND  product wound-responsive family protein  note wound-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to wounding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77310.1); Has 468 Blast hits to 442 proteins in 110 species: Archae - 0; Bacteria - 20; Metazoa - 233; Fungi - 51; Plants - 45; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT1G21610.1p  transcript_id AT1G21610.1  protein_id AT1G21610.1p  transcript_id AT1G21610.1  
At1g21610	chr1:007574104	0.0	W/7574104-7574343,7574956-7575042,7575193-7575285,7575359-7575435,7575831-7575957,7576039-7576380,7576585-7576666,7576752-7576864,7576952-7577035,7577221-7577346,7577628-7577756,7577849-7577896,7578052-7578162,7578251-7578643	AT1G21610.2  CDS  gene_syn F24J8.24  go_component cellular_component|GO:0005575||ND  go_process response to wounding|GO:0009611||ISS  go_function molecular_function|GO:0003674||ND  product wound-responsive family protein  note wound-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to wounding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77310.1); Has 497 Blast hits to 466 proteins in 109 species: Archae - 0; Bacteria - 16; Metazoa - 258; Fungi - 58; Plants - 45; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).  protein_id AT1G21610.2p  transcript_id AT1G21610.2  protein_id AT1G21610.2p  transcript_id AT1G21610.2  
At1g21620	chr1:007579129	0.0	W/7579129-7579336,7579380-7579691,7579765-7580171	AT1G21620.1  CDS  gene_syn APUM20, Arabidopsis Pumilio 20, F24J8.22  gene APUM20  go_function RNA binding|GO:0003723||IEA  go_function binding|GO:0005488||IEA  go_function RNA binding|GO:0003723||ISS  product APUM20 (Arabidopsis Pumilio 20); RNA binding / binding  note Arabidopsis Pumilio 20 (APUM20); FUNCTIONS IN: RNA binding, binding; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding region (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: APUM19 (Arabidopsis Pumilio 19); RNA binding / binding (TAIR:AT5G60180.1); Has 1461 Blast hits to 822 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 673; Fungi - 265; Plants - 308; Viruses - 0; Other Eukaryotes - 215 (source: NCBI BLink).  protein_id AT1G21620.1p  transcript_id AT1G21620.1  protein_id AT1G21620.1p  transcript_id AT1G21620.1  
At1g21630	chr1:007581457	0.0	W/7581457-7581603,7582231-7583461,7583756-7583974,7584053-7584276,7584695-7584769,7585019-7585090,7585176-7585274,7585378-7585449,7585521-7585635,7585908-7585976,7586163-7586463,7586629-7586740,7586876-7587796	AT1G21630.1  CDS  gene_syn F8K7.4, F8K7_4  go_component plasma membrane|GO:0005886|17317660|IDA  go_function calcium ion binding|GO:0005509||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EPS15 homology (EH) (InterPro:IPR000261), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT1G20760.1); Has 19247 Blast hits to 8018 proteins in 567 species: Archae - 61; Bacteria - 5974; Metazoa - 5911; Fungi - 2202; Plants - 397; Viruses - 84; Other Eukaryotes - 4618 (source: NCBI BLink).  protein_id AT1G21630.1p  transcript_id AT1G21630.1  protein_id AT1G21630.1p  transcript_id AT1G21630.1  
At1g21640	chr1:007588726	0.0	W/7588726-7588956,7589170-7591026,7591142-7591263,7591353-7591494,7591594-7591818,7591967-7592041,7592187-7592288,7592466-7592669	AT1G21640.1  CDS  gene_syn ATNADK2, F8K7.5, F8K7_5, NAD kinase 2, NADK2  gene NADK2  function Encodes a protein with NAD kinase activity. The protein was also shown to bind calmodulin.  go_component chloroplast|GO:0009507|18431481|IDA  go_process metabolic process|GO:0008152||IEA  go_process pyridine nucleotide biosynthetic process|GO:0019363||ISS  go_function NAD+ kinase activity|GO:0003951|15247403|IDA  go_function NAD+ kinase activity|GO:0003951||ISS  go_function calmodulin binding|GO:0005516|15247403|IDA  product NADK2; NAD+ kinase/ calmodulin binding  note NADK2; FUNCTIONS IN: NAD+ kinase activity, calmodulin binding; INVOLVED IN: pyridine nucleotide biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATP-NAD kinase, PpnK-type, alpha/beta (InterPro:IPR017438), ATP-NAD kinase, PpnK-type (InterPro:IPR016064), ATP-NAD/AcoX kinase (InterPro:IPR002504), ATP-NAD kinase, PpnK-type, all-beta (InterPro:IPR017437); BEST Arabidopsis thaliana protein match is: NADK1 (NAD KINASE 1); NAD+ kinase/ NADH kinase/ calmodulin binding (TAIR:AT3G21070.2); Has 5795 Blast hits to 5703 proteins in 1524 species: Archae - 176; Bacteria - 2944; Metazoa - 255; Fungi - 281; Plants - 71; Viruses - 0; Other Eukaryotes - 2068 (source: NCBI BLink).  protein_id AT1G21640.1p  transcript_id AT1G21640.1  protein_id AT1G21640.1p  transcript_id AT1G21640.1  
At1g21650	chr1:007600405	0.0	C/7600405-7600590,7600030-7600164,7599872-7599941,7599665-7599729,7599433-7599553,7599165-7599256,7599008-7599073,7598856-7598920,7598705-7598792,7598467-7598532,7598248-7598363,7597701-7597791,7597460-7597543,7597283-7597375,7597076-7597171,7596887-7596972,7596515-7596593,7596312-7596425,7596034-7596129,7595838-7595901,7595438-7595727,7595055-7595110,7594757-7594874,7594566-7594646,7594149-7594228,7593988-7594042,7593811-7593880,7593517-7593685,7593294-7593417,7593139-7593213,7592891-7593055	AT1G21650.1  CDS  gene_syn F8K7.7, F8K7_7  go_component chloroplast|GO:0009507||IEA  go_component membrane|GO:0016020||IEA  go_process protein targeting|GO:0006605||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process protein import|GO:0017038||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process intracellular protein transport|GO:0006886||ISS  go_function ATP binding|GO:0005524||ISS  product ATP binding / protein binding  note ATP binding / protein binding; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: intracellular protein transport, protein targeting, protein import; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SecA Wing and Scaffold (InterPro:IPR011116), SecA preprotein cross-linking region (InterPro:IPR011130), SecA DEAD-like (InterPro:IPR011115), SecA motor DEAD (InterPro:IPR014018), SecA protein (InterPro:IPR000185); BEST Arabidopsis thaliana protein match is: preprotein translocase secA subunit, putative (TAIR:AT4G01800.1); Has 15546 Blast hits to 9998 proteins in 1582 species: Archae - 0; Bacteria - 7300; Metazoa - 44; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 8147 (source: NCBI BLink).  protein_id AT1G21650.1p  transcript_id AT1G21650.1  protein_id AT1G21650.1p  transcript_id AT1G21650.1  
At1g21651	chr1:007602553	0.0	C/7602553-7604152,7602386-7602441,7601983-7602255,7601665-7601901,7601450-7601569,7601186-7601314,7601061-7601081	AT1G21651.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT1G24530.1); Has 24082 Blast hits to 13732 proteins in 513 species: Archae - 28; Bacteria - 3626; Metazoa - 10644; Fungi - 4830; Plants - 1984; Viruses - 3; Other Eukaryotes - 2967 (source: NCBI BLink).  protein_id AT1G21651.1p  transcript_id AT1G21651.1  protein_id AT1G21651.1p  transcript_id AT1G21651.1  
At1g21660	chr1:007605924	0.0	W/7605924-7606504,7606707-7606903,7606998-7607206,7607307-7607421,7607502-7607599,7607921-7607986,7608195-7608284,7608386-7608562,7608797-7608835	AT1G21660.1  CDS  gene_syn F8K7.8, F8K7_8  go_function heat shock protein binding|GO:0031072||IEA  go_component cellular_component|GO:0005575||ND  product heat shock protein binding  note heat shock protein binding; FUNCTIONS IN: heat shock protein binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: heat shock protein binding (TAIR:AT4G12770.1); Has 3095 Blast hits to 1073 proteins in 205 species: Archae - 0; Bacteria - 412; Metazoa - 629; Fungi - 312; Plants - 132; Viruses - 8; Other Eukaryotes - 1602 (source: NCBI BLink).  protein_id AT1G21660.1p  transcript_id AT1G21660.1  protein_id AT1G21660.1p  transcript_id AT1G21660.1  
At1g21670	chr1:007610409	0.0	W/7610409-7612520	AT1G21670.1  CDS  gene_syn F8K7.9, F8K7_9  go_component cell wall|GO:0005618|15593128|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process proteolysis|GO:0006508||IEA  product unknown protein  note INVOLVED IN: proteolysis; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40-like Beta Propeller (InterPro:IPR011659), Peptidase S9B, dipeptidylpeptidase IV N-terminal (InterPro:IPR002469), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21680.1); Has 6126 Blast hits to 3685 proteins in 788 species: Archae - 47; Bacteria - 3362; Metazoa - 27; Fungi - 47; Plants - 58; Viruses - 0; Other Eukaryotes - 2585 (source: NCBI BLink).  protein_id AT1G21670.1p  transcript_id AT1G21670.1  protein_id AT1G21670.1p  transcript_id AT1G21670.1  
At1g21680	chr1:007613028	0.0	W/7613028-7615148	AT1G21680.1  CDS  gene_syn F8K7.10, F8K7_10  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40-like Beta Propeller (InterPro:IPR011659), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21670.1); Has 6869 Blast hits to 3873 proteins in 790 species: Archae - 41; Bacteria - 3697; Metazoa - 41; Fungi - 39; Plants - 64; Viruses - 0; Other Eukaryotes - 2987 (source: NCBI BLink).  protein_id AT1G21680.1p  transcript_id AT1G21680.1  protein_id AT1G21680.1p  transcript_id AT1G21680.1  
At1g21690	chr1:007615675	0.0	W/7615675-7615718,7615805-7615847,7616028-7616107,7616604-7616726,7616816-7616885,7616967-7617040,7617242-7617362,7617441-7617503,7617589-7617648,7617748-7617873,7617957-7618043,7618270-7618362	AT1G21690.2  CDS  gene_syn F8K7.11, F8K7_11, emb1968, embryo defective 1968  gene emb1968  go_component nucleolus|GO:0005730|15496452|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA clamp loader activity|GO:0003689||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component DNA replication factor C complex|GO:0005663||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function ATPase activity|GO:0016887||ISS  product emb1968 (embryo defective 1968); ATP binding / ATPase/ DNA binding / DNA clamp loader/ nucleoside-triphosphatase/ nucleotide binding  note embryo defective 1968 (emb1968); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: DNA replication factor C complex, nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Replication factor C (InterPro:IPR013748), DNA polymerase III clamp loader subunit, C-terminal (InterPro:IPR008921); BEST Arabidopsis thaliana protein match is: replication factor C 40 kDa, putative (TAIR:AT1G63160.1); Has 10614 Blast hits to 10587 proteins in 1559 species: Archae - 417; Bacteria - 4328; Metazoa - 613; Fungi - 579; Plants - 189; Viruses - 64; Other Eukaryotes - 4424 (source: NCBI BLink).  protein_id AT1G21690.2p  transcript_id AT1G21690.2  protein_id AT1G21690.2p  transcript_id AT1G21690.2  
At1g21690	chr1:007615675	0.0	W/7615675-7615718,7615805-7615883,7616028-7616107,7616604-7616726,7616816-7616885,7616967-7617040,7617242-7617362,7617441-7617503,7617589-7617648,7617748-7617873,7617957-7618043,7618270-7618362	AT1G21690.1  CDS  gene_syn F8K7.11, F8K7_11, emb1968, embryo defective 1968  gene emb1968  go_component nucleolus|GO:0005730|15496452|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA clamp loader activity|GO:0003689||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component DNA replication factor C complex|GO:0005663||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function ATPase activity|GO:0016887||ISS  product emb1968 (embryo defective 1968); ATP binding / ATPase/ DNA binding / DNA clamp loader/ nucleoside-triphosphatase/ nucleotide binding  note embryo defective 1968 (emb1968); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: DNA replication factor C complex, nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Replication factor C (InterPro:IPR013748), DNA polymerase III clamp loader subunit, C-terminal (InterPro:IPR008921); BEST Arabidopsis thaliana protein match is: replication factor C 40 kDa, putative (TAIR:AT1G63160.1); Has 12080 Blast hits to 12043 proteins in 1582 species: Archae - 427; Bacteria - 5194; Metazoa - 735; Fungi - 600; Plants - 188; Viruses - 64; Other Eukaryotes - 4872 (source: NCBI BLink).  protein_id AT1G21690.1p  transcript_id AT1G21690.1  protein_id AT1G21690.1p  transcript_id AT1G21690.1  
At1g21695	chr1:007619132	0.0	W/7619132-7619785	AT1G21695.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77400.1); Has 5836 Blast hits to 1030 proteins in 175 species: Archae - 0; Bacteria - 79; Metazoa - 635; Fungi - 270; Plants - 320; Viruses - 57; Other Eukaryotes - 4475 (source: NCBI BLink).  protein_id AT1G21695.1p  transcript_id AT1G21695.1  protein_id AT1G21695.1p  transcript_id AT1G21695.1  
At1g21700	chr1:007623963	0.0	C/7623963-7623978,7623294-7623824,7622229-7622767,7621715-7622072,7621549-7621622,7621268-7621353,7621105-7621172,7620828-7621003,7620156-7620731	AT1G21700.1  CDS  gene_syn ATSWI3C, CHB4, CHROMATIN REMODELING COMPLEX SUBUNIT B, F8K7.13, F8K7_13, SWITCH/SUCROSE NONFERMENTING 3C  gene ATSWI3C  function a member of the Arabidopsis SWI3 gene family. Protein physically interacts with ATSWI3B and ATSWI3A, the other two members of the SWI3 family. Homologous to yeast SWI3 & RSC8, components of the SWI/SNF and RSC chromatin remodeling complexes. Referred to as CHB3 in Zhou et al (2003).  go_function DNA binding|GO:0003677||IEA  go_component SWI/SNF complex|GO:0016514|12140326|ISS  go_component chromatin remodeling complex|GO:0016585||ISS  go_process chromatin remodeling|GO:0006338|12140326|ISS  go_function DNA binding|GO:0003677||ISS  product ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C); DNA binding  note SWITCH/SUCROSE NONFERMENTING 3C (ATSWI3C); FUNCTIONS IN: DNA binding; INVOLVED IN: chromatin remodeling; LOCATED IN: SWI/SNF complex, chromatin remodeling complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SWIRM (InterPro:IPR007526), SANT, eukarya (InterPro:IPR017884); BEST Arabidopsis thaliana protein match is: CHB3; DNA binding / transcription factor/ zinc ion binding (TAIR:AT4G34430.4); Has 4336 Blast hits to 3327 proteins in 215 species: Archae - 0; Bacteria - 34; Metazoa - 1816; Fungi - 645; Plants - 247; Viruses - 2; Other Eukaryotes - 1592 (source: NCBI BLink).  protein_id AT1G21700.1p  transcript_id AT1G21700.1  protein_id AT1G21700.1p  transcript_id AT1G21700.1  
At1g21710	chr1:007624439	0.0	W/7624439-7625082,7625300-7625510,7625627-7625869	AT1G21710.1  CDS  gene_syn 8-OXOGUANINE-DNA GLYCOSYLASE 1, F8K7.14, F8K7_14, OGG1  gene OGG1  function Encodes 8-oxoguanine-DNA glycosylase. DNA repair enzyme.  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_process DNA repair|GO:0006281|12627976|IDA  go_process base-excision repair|GO:0006284||ISS  go_function oxidized purine base lesion DNA N-glycosylase activity|GO:0008534|12627976|IDA  product OGG1 (8-OXOGUANINE-DNA GLYCOSYLASE 1); oxidized purine base lesion DNA N-glycosylase  note 8-OXOGUANINE-DNA GLYCOSYLASE 1 (OGG1); FUNCTIONS IN: oxidized purine base lesion DNA N-glycosylase activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal (InterPro:IPR012294), 8-oxoguanine DNA glycosylase, N-terminal (InterPro:IPR012904), HhH-GPD domain (InterPro:IPR003265); Has 626 Blast hits to 612 proteins in 245 species: Archae - 68; Bacteria - 157; Metazoa - 157; Fungi - 103; Plants - 23; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).  protein_id AT1G21710.1p  transcript_id AT1G21710.1  protein_id AT1G21710.1p  transcript_id AT1G21710.1  
At1g21720	chr1:007626394	0.0	W/7626394-7626399,7626519-7626700,7626810-7626917,7627079-7627168,7627427-7627511,7627838-7627932,7628022-7628070	AT1G21720.1  CDS  gene_syn 20S PROTEASOME BETA SUBUNIT PBC1, F8K7.15, F8K7_15, PBC1, PROTEASOME BETA SUBUNIT C1  gene PBC1  function 20S proteasome beta subunit PBC1 truncated protein (PBC1)  go_component plasma membrane|GO:0005886|17151019|IDA  go_function threonine-type endopeptidase activity|GO:0004298||IEA  go_component proteasome core complex|GO:0005839|9373170|TAS  go_component proteasome core complex|GO:0005839|9611183|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_function peptidase activity|GO:0008233||ISS  product PBC1 (PROTEASOME BETA SUBUNIT C1); peptidase/ threonine-type endopeptidase  note PROTEASOME BETA SUBUNIT C1 (PBC1); FUNCTIONS IN: peptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: PBC2; peptidase/ threonine-type endopeptidase (TAIR:AT1G77440.2); Has 2248 Blast hits to 2248 proteins in 294 species: Archae - 251; Bacteria - 15; Metazoa - 946; Fungi - 550; Plants - 164; Viruses - 0; Other Eukaryotes - 322 (source: NCBI BLink).  protein_id AT1G21720.1p  transcript_id AT1G21720.1  protein_id AT1G21720.1p  transcript_id AT1G21720.1  
At1g21722	chr1:007628456	0.0	W/7628456-7628553,7628649-7629252	AT1G21722.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78922.1).  protein_id AT1G21722.1p  transcript_id AT1G21722.1  protein_id AT1G21722.1p  transcript_id AT1G21722.1  
At1g21730	chr1:007630365	0.0	W/7630365-7630621,7630718-7630815,7630905-7630994,7631144-7631196,7631345-7631410,7631494-7631547,7631902-7631961,7632090-7632168,7632461-7632528,7632656-7632718,7632839-7632943,7633021-7633125,7633328-7633435,7633516-7633632,7633879-7634043,7634174-7634344,7634501-7634698,7634910-7635050,7635140-7635265,7635393-7635443,7635556-7635603,7635702-7635953,7636050-7636247	AT1G21730.1  CDS  gene_syn F8K7.17, F8K7_17  go_component plasma membrane|GO:0005886|17317660|IDA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product kinesin-related protein (MKRP1)  note kinesin-related protein (MKRP1); FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATP binding / microtubule motor (TAIR:AT5G06670.1); Has 12653 Blast hits to 10834 proteins in 399 species: Archae - 30; Bacteria - 261; Metazoa - 6347; Fungi - 1203; Plants - 992; Viruses - 18; Other Eukaryotes - 3802 (source: NCBI BLink).  protein_id AT1G21730.1p  transcript_id AT1G21730.1  protein_id AT1G21730.1p  transcript_id AT1G21730.1  
At1g21738	chr1:007641002	0.0	C/7641002-7641094	AT1G21738.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G21738.1p  transcript_id AT1G21738.1  protein_id AT1G21738.1p  transcript_id AT1G21738.1  
At1g21740	chr1:007641580	0.0	W/7641580-7643197,7643669-7643877,7643964-7644187,7644268-7645078	AT1G21740.1  CDS  gene_syn F8K7.18, F8K7_18  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  product unknown protein  note unknown protein; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77500.1); Has 1095 Blast hits to 940 proteins in 150 species: Archae - 5; Bacteria - 44; Metazoa - 449; Fungi - 64; Plants - 357; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).  protein_id AT1G21740.1p  transcript_id AT1G21740.1  protein_id AT1G21740.1p  transcript_id AT1G21740.1  
At1g21750	chr1:007645767	0.0	W/7645767-7645939,7646330-7646360,7646471-7646758,7646851-7647039,7647116-7647241,7647553-7647690,7647787-7648024,7648116-7648228,7648305-7648411,7648635-7648695	AT1G21750.2  CDS  gene_syn ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, ATPDI5, ATPDIL1-1, F8K7.19, F8K7_19, PDI-LIKE 1-1, PDI5, PROTEIN DISULFIDE ISOMERASE 5  gene ATPDIL1-1  function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily; isoform contains non-consensus GA donor splice site at intron 9. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response.  go_component vacuole|GO:0005773|15539469|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component protein storage vacuole|GO:0000326|18676877|IDA  go_component lytic vacuole within protein storage vacuole|GO:0000327|18676877|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process embryonic development|GO:0009790|18676877|IMP  go_process response to endoplasmic reticulum stress|GO:0034976|18574595|IEP  go_process regulation of programmed cell death|GO:0043067|18676877|IMP  go_process seed development|GO:0048316|18676877|IMP  go_function protein disulfide isomerase activity|GO:0003756|18574595|ISS  go_function protein disulfide isomerase activity|GO:0003756||ISS  product ATPDIL1-1 (PDI-LIKE 1-1); protein disulfide isomerase  note PDI-LIKE 1-1 (ATPDIL1-1); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: embryonic development, response to salt stress, regulation of programmed cell death, response to endoplasmic reticulum stress, seed development; LOCATED IN: in 8 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Disulphide isomerase (InterPro:IPR005788), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Protein disulphide isomerase (InterPro:IPR005792), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATPDIL1-2 (PDI-LIKE 1-2); protein disulfide isomerase (TAIR:AT1G77510.1); Has 21485 Blast hits to 11997 proteins in 1693 species: Archae - 187; Bacteria - 8292; Metazoa - 4811; Fungi - 1110; Plants - 1485; Viruses - 23; Other Eukaryotes - 5577 (source: NCBI BLink).  protein_id AT1G21750.2p  transcript_id AT1G21750.2  protein_id AT1G21750.2p  transcript_id AT1G21750.2  
At1g21750	chr1:007645767	0.0	W/7645767-7645939,7646330-7646360,7646471-7646758,7646851-7647039,7647116-7647241,7647553-7647690,7647787-7648024,7648116-7648228,7648305-7648514	AT1G21750.1  CDS  gene_syn ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, ATPDI5, ATPDIL1-1, F8K7.19, F8K7_19, PDI-LIKE 1-1, PDI5, PROTEIN DISULFIDE ISOMERASE 5  gene ATPDIL1-1  function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily; isoform contains non-consensus GA donor splice site at intron 9. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response.  go_component vacuole|GO:0005773|15539469|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component protein storage vacuole|GO:0000326|18676877|IDA  go_component lytic vacuole within protein storage vacuole|GO:0000327|18676877|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process embryonic development|GO:0009790|18676877|IMP  go_process response to endoplasmic reticulum stress|GO:0034976|18574595|IEP  go_process regulation of programmed cell death|GO:0043067|18676877|IMP  go_process seed development|GO:0048316|18676877|IMP  go_function protein disulfide isomerase activity|GO:0003756|18574595|ISS  go_function protein disulfide isomerase activity|GO:0003756||ISS  product ATPDIL1-1 (PDI-LIKE 1-1); protein disulfide isomerase  note PDI-LIKE 1-1 (ATPDIL1-1); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: embryonic development, response to salt stress, regulation of programmed cell death, response to endoplasmic reticulum stress, seed development; LOCATED IN: in 8 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Disulphide isomerase (InterPro:IPR005788), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Protein disulphide isomerase (InterPro:IPR005792), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATPDIL1-2 (PDI-LIKE 1-2); protein disulfide isomerase (TAIR:AT1G77510.1); Has 21968 Blast hits to 12211 proteins in 1700 species: Archae - 187; Bacteria - 8681; Metazoa - 4758; Fungi - 1116; Plants - 1465; Viruses - 23; Other Eukaryotes - 5738 (source: NCBI BLink).  protein_id AT1G21750.1p  transcript_id AT1G21750.1  protein_id AT1G21750.1p  transcript_id AT1G21750.1  
At1g21760	chr1:007649324	0.0	W/7649324-7649333,7649720-7649803,7649896-7650008,7650103-7650316,7650451-7650524,7650619-7650672,7650768-7650875,7650964-7651022,7651254-7651464,7651554-7651613	AT1G21760.1  CDS  gene_syn ATFBP7, F-BOX PROTEIN 7, F8K7.20, F8K7_20, FBP7  gene FBP7  function This gene is predicted to encode an F-box protein that is evolutionarily conserved between Arabidopsis and other eukaryotes including S.cerevisiae and humans. It may play a role in regulating translation under conditions of temperature stress. FBP7 transcript levels are increased at high and low temperatures.  go_component nucleus|GO:0005634|17240087|IDA  go_component mitochondrion|GO:0005739|17240087|IDA  go_process regulation of translation|GO:0006417|17240087|IMP  go_process response to heat|GO:0009408|17240087|IMP  go_process response to cold|GO:0009409|17240087|IMP  go_function molecular_function|GO:0003674||ND  product FBP7 (F-BOX PROTEIN 7)  note F-BOX PROTEIN 7 (FBP7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cold, response to heat, regulation of translation; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); Has 356 Blast hits to 356 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 227; Fungi - 85; Plants - 36; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G21760.1p  transcript_id AT1G21760.1  protein_id AT1G21760.1p  transcript_id AT1G21760.1  
At1g21770	chr1:007651998	0.0	C/7651998-7652249,7651843-7651926	AT1G21770.1  CDS  gene_syn F8K7.21, F8K7_21  go_component peroxisome|GO:0005777|17951448|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: H3/H4 histone acetyltransferase (TAIR:AT1G77540.1); Has 221 Blast hits to 221 proteins in 107 species: Archae - 4; Bacteria - 182; Metazoa - 4; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G21770.1p  transcript_id AT1G21770.1  protein_id AT1G21770.1p  transcript_id AT1G21770.1  
At1g21780	chr1:007652476	0.0	W/7652476-7652588,7652668-7652813,7653054-7653169,7653261-7653866	AT1G21780.1  CDS  gene_syn F8K7.22, F8K7_22  function BTB/POZ domain-containing protein. Contains similarity to gb:AJ000644 SPOP (speckle-type POZ protein) from Homo sapiens and contains a PF:00651 BTB/POZ domain. ESTs gb:T75841, gb:R89974, gb:R30221, gb:N96386, gb:T76457, gb:AI100013 and gb:T76456 come from this gene;supported by full-length. Interacts with CUL3A and CUL3B.  go_component Cul3-RING ubiquitin ligase complex|GO:0031463|15659098|IPI  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515|15659098|IPI  go_function protein binding|GO:0005515||ISS  product BTB/POZ domain-containing protein  note BTB/POZ domain-containing protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: Cul3-RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT1G55760.1); Has 4564 Blast hits to 4525 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 3738; Fungi - 18; Plants - 593; Viruses - 60; Other Eukaryotes - 155 (source: NCBI BLink).  protein_id AT1G21780.1p  transcript_id AT1G21780.1  protein_id AT1G21780.1p  transcript_id AT1G21780.1  
At1g21780	chr1:007652476	0.0	W/7652476-7652588,7652668-7652813,7653054-7653169,7653261-7653866	AT1G21780.2  CDS  gene_syn F8K7.22, F8K7_22  function BTB/POZ domain-containing protein. Contains similarity to gb:AJ000644 SPOP (speckle-type POZ protein) from Homo sapiens and contains a PF:00651 BTB/POZ domain. ESTs gb:T75841, gb:R89974, gb:R30221, gb:N96386, gb:T76457, gb:AI100013 and gb:T76456 come from this gene;supported by full-length. Interacts with CUL3A and CUL3B.  go_component Cul3-RING ubiquitin ligase complex|GO:0031463|15659098|IPI  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515|15659098|IPI  go_function protein binding|GO:0005515||ISS  product BTB/POZ domain-containing protein  note BTB/POZ domain-containing protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: Cul3-RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT1G55760.1); Has 4564 Blast hits to 4525 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 3738; Fungi - 18; Plants - 593; Viruses - 60; Other Eukaryotes - 155 (source: NCBI BLink).  protein_id AT1G21780.2p  transcript_id AT1G21780.2  protein_id AT1G21780.2p  transcript_id AT1G21780.2  
At1g21790	chr1:007654357	0.0	W/7654357-7654615,7654893-7655170,7655362-7655691	AT1G21790.1  CDS  gene_syn F8K7.23, F8K7_23  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); Has 127 Blast hits to 127 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 84; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G21790.1p  transcript_id AT1G21790.1  protein_id AT1G21790.1p  transcript_id AT1G21790.1  
At1g21800	chr1:007656120	0.0	C/7656120-7656191	AT1G21800.1  tRNA  gene_syn 51452.TRNA-GLN-1, 52107.TRNA-GLN-1, AT1G21805  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gln (anticodon: TTG)  transcript_id AT1G21800.1  
At1g21810	chr1:007658541	0.0	C/7658541-7658634,7657051-7658456,7656578-7656964	AT1G21810.1  CDS  gene_syn T26F17.2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869, plant (InterPro:IPR008587); BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT1G77580.2); Has 62951 Blast hits to 33517 proteins in 1593 species: Archae - 800; Bacteria - 6354; Metazoa - 33836; Fungi - 4765; Plants - 2651; Viruses - 311; Other Eukaryotes - 14234 (source: NCBI BLink).  protein_id AT1G21810.1p  transcript_id AT1G21810.1  protein_id AT1G21810.1p  transcript_id AT1G21810.1  
At1g21830	chr1:007662257	0.0	C/7662257-7662521,7661429-7661784	AT1G21830.1  CDS  gene_syn AT1G21820, T26F17.4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 31 Blast hits to 31 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21830.1p  transcript_id AT1G21830.1  protein_id AT1G21830.1p  transcript_id AT1G21830.1  
At1g21835	chr1:007665664	0.0	W/7665664-7665936	AT1G21835.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34792.1); Has 42 Blast hits to 42 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21835.1p  transcript_id AT1G21835.1  protein_id AT1G21835.1p  transcript_id AT1G21835.1  
At1g21840	chr1:007666859	0.0	W/7666859-7667581	AT1G21840.1  CDS  gene_syn T26F17.5, UREF, urease accessory protein F  gene UREF  function Encodes a urease accessory protein which is essential for the activation of plant urease.  go_function nickel ion binding|GO:0016151||IEA  go_component cellular_component|GO:0005575||ND  go_process nitrogen compound metabolic process|GO:0006807|16244137|IMP  go_process positive regulation of metalloenzyme activity|GO:0048554|16244137|IMP  product UREF (urease accessory protein F); nickel ion binding  note urease accessory protein F (UREF); FUNCTIONS IN: nickel ion binding; INVOLVED IN: nitrogen compound metabolic process, positive regulation of metalloenzyme activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Urease accessory protein UreF (InterPro:IPR002639); Has 475 Blast hits to 475 proteins in 217 species: Archae - 10; Bacteria - 365; Metazoa - 8; Fungi - 46; Plants - 18; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT1G21840.1p  transcript_id AT1G21840.1  protein_id AT1G21840.1p  transcript_id AT1G21840.1  
At1g21850	chr1:007670387	0.0	C/7670387-7670530,7670192-7670301,7669605-7669875,7669289-7669388,7668859-7669201,7668363-7668728,7668147-7668225,7667803-7668045	AT1G21850.1  CDS  gene_syn SKU5 Similar 8, T26F17.6, T26F17_6, sks8  gene sks8  go_component endomembrane system|GO:0012505||IEA  go_function copper ion binding|GO:0005507||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product sks8 (SKU5 Similar 8); copper ion binding / oxidoreductase  note SKU5 Similar 8 (sks8); FUNCTIONS IN: oxidoreductase activity, copper ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: embryo; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: sks7 (SKU5 Similar 7); copper ion binding / oxidoreductase (TAIR:AT1G21860.1); Has 3640 Blast hits to 3603 proteins in 656 species: Archae - 10; Bacteria - 1030; Metazoa - 250; Fungi - 1434; Plants - 779; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).  protein_id AT1G21850.1p  transcript_id AT1G21850.1  protein_id AT1G21850.1p  transcript_id AT1G21850.1  
At1g21860	chr1:007674072	0.0	C/7674072-7674215,7673863-7673972,7672954-7673224,7672680-7672779,7672253-7672595,7671624-7671989,7671329-7671407,7671028-7671231	AT1G21860.1  CDS  gene_syn SKU5 Similar 7, T26F17.7, T26F17_7, sks7  gene sks7  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_function copper ion binding|GO:0005507||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product sks7 (SKU5 Similar 7); copper ion binding / oxidoreductase  note SKU5 Similar 7 (sks7); FUNCTIONS IN: oxidoreductase activity, copper ion binding; LOCATED IN: plant-type cell wall; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: sks8 (SKU5 Similar 8); copper ion binding / oxidoreductase (TAIR:AT1G21850.1); Has 3552 Blast hits to 3503 proteins in 630 species: Archae - 8; Bacteria - 947; Metazoa - 243; Fungi - 1443; Plants - 794; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT1G21860.1p  transcript_id AT1G21860.1  protein_id AT1G21860.1p  transcript_id AT1G21860.1  
At1g21864	chr1:007675565	0.0	W/7675565-7675846	AT1G21864.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21866.1); Has 42 Blast hits to 42 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21864.1p  transcript_id AT1G21864.1  protein_id AT1G21864.1p  transcript_id AT1G21864.1  
At1g21866	chr1:007677499	0.0	W/7677499-7677780	AT1G21866.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21864.1); Has 42 Blast hits to 42 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21866.1p  transcript_id AT1G21866.1  protein_id AT1G21866.1p  transcript_id AT1G21866.1  
At1g21870	chr1:007678208	0.0	W/7678208-7678321,7678418-7678667,7678763-7678970,7679153-7679384,7679476-7679697	AT1G21870.1  CDS  gene_syn T26F17.9, T26F17_9  go_component membrane|GO:0016020||IEA  go_function organic anion transmembrane transporter activity|GO:0008514||ISS  product glucose-6-phosphate/phosphate translocator-related  note glucose-6-phosphate/phosphate translocator-related; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: membrane; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: glucose-6-phosphate/phosphate translocator-related (TAIR:AT1G77610.1); Has 2236 Blast hits to 2233 proteins in 236 species: Archae - 0; Bacteria - 50; Metazoa - 608; Fungi - 359; Plants - 914; Viruses - 0; Other Eukaryotes - 305 (source: NCBI BLink).  protein_id AT1G21870.1p  transcript_id AT1G21870.1  protein_id AT1G21870.1p  transcript_id AT1G21870.1  
At1g21880	chr1:007680689	0.0	W/7680689-7681355,7681667-7681784,7681883-7682044,7682136-7682167,7682255-7682526	AT1G21880.2  CDS  gene_syn LYM1, LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR, T26F17.10, T26F17_10  gene LYM1  go_component plasma membrane|GO:0005886|17644812|IDA  go_component anchored to plasma membrane|GO:0046658|12805588|IDA  go_process cell wall macromolecule catabolic process|GO:0016998||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process cell wall macromolecule catabolic process|GO:0016998||ISS  go_function molecular_function|GO:0003674||ND  product LYM1 (LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR)  note LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR (LYM1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482); BEST Arabidopsis thaliana protein match is: peptidoglycan-binding LysM domain-containing protein (TAIR:AT1G77630.1); Has 356 Blast hits to 346 proteins in 78 species: Archae - 0; Bacteria - 128; Metazoa - 0; Fungi - 1; Plants - 210; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G21880.2p  transcript_id AT1G21880.2  protein_id AT1G21880.2p  transcript_id AT1G21880.2  
At1g21880	chr1:007680689	0.0	W/7680689-7681355,7681667-7681784,7681883-7682048	AT1G21880.1  CDS  gene_syn LYM1, LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR, T26F17.10, T26F17_10  gene LYM1  go_component plasma membrane|GO:0005886|17644812|IDA  go_component anchored to plasma membrane|GO:0046658|12805588|IDA  go_process cell wall macromolecule catabolic process|GO:0016998||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process cell wall macromolecule catabolic process|GO:0016998||ISS  go_function molecular_function|GO:0003674||ND  product LYM1 (LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR)  note LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR (LYM1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482); BEST Arabidopsis thaliana protein match is: peptidoglycan-binding LysM domain-containing protein (TAIR:AT1G77630.1); Has 355 Blast hits to 345 proteins in 78 species: Archae - 0; Bacteria - 128; Metazoa - 0; Fungi - 1; Plants - 209; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G21880.1p  transcript_id AT1G21880.1  protein_id AT1G21880.1p  transcript_id AT1G21880.1  
At1g21890	chr1:007685394	0.0	C/7685394-7685581,7685069-7685131,7684803-7684919,7684061-7684328,7683807-7683965,7683564-7683715,7682808-7683030	AT1G21890.1  CDS  gene_syn T26F17.11, T26F17_11  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  product nodulin MtN21 family protein  note nodulin MtN21 family protein; LOCATED IN: membrane; EXPRESSED IN: inflorescence meristem, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT4G08300.1); Has 1856 Blast hits to 1841 proteins in 322 species: Archae - 16; Bacteria - 796; Metazoa - 4; Fungi - 0; Plants - 633; Viruses - 0; Other Eukaryotes - 407 (source: NCBI BLink).  protein_id AT1G21890.1p  transcript_id AT1G21890.1  protein_id AT1G21890.1p  transcript_id AT1G21890.1  
At1g21900	chr1:007692112	0.0	C/7692112-7692327,7691559-7691771,7691401-7691477,7691165-7691309	AT1G21900.1  CDS  gene_syn T26F17.12, T26F17_12  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_process intracellular protein transport|GO:0006886||ISS  go_function protein transmembrane transporter activity|GO:0008320||ISS  product emp24/gp25L/p24 family protein  note emp24/gp25L/p24 family protein; FUNCTIONS IN: protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family protein (TAIR:AT1G09580.1); Has 1198 Blast hits to 1196 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 609; Fungi - 316; Plants - 130; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).  protein_id AT1G21900.1p  transcript_id AT1G21900.1  protein_id AT1G21900.1p  transcript_id AT1G21900.1  
At1g21910	chr1:007696655	0.0	W/7696655-7697347	AT1G21910.1  CDS  gene_syn T26F17.14, T26F17_14  function encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor family protein  note AP2 domain-containing transcription factor family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT1G77640.1); Has 4650 Blast hits to 3730 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 229; Fungi - 8; Plants - 3702; Viruses - 2; Other Eukaryotes - 709 (source: NCBI BLink).  protein_id AT1G21910.1p  transcript_id AT1G21910.1  protein_id AT1G21910.1p  transcript_id AT1G21910.1  
At1g21920	chr1:007705001	0.0	C/7705001-7705866,7704690-7704918,7704454-7704612	AT1G21920.1  CDS  gene_syn T26F17.15, T26F17_15  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related  note MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MORN motif (InterPro:IPR003409); BEST Arabidopsis thaliana protein match is: MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related (TAIR:AT1G77660.1); Has 19724 Blast hits to 5101 proteins in 338 species: Archae - 0; Bacteria - 1960; Metazoa - 3157; Fungi - 112; Plants - 710; Viruses - 0; Other Eukaryotes - 13785 (source: NCBI BLink).  protein_id AT1G21920.1p  transcript_id AT1G21920.1  protein_id AT1G21920.1p  transcript_id AT1G21920.1  
At1g21925	chr1:007710423	0.0	C/7710423-7710725	AT1G21925.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21928.1); Has 45 Blast hits to 45 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21925.1p  transcript_id AT1G21925.1  protein_id AT1G21925.1p  transcript_id AT1G21925.1  
At1g21928	chr1:007712211	0.0	C/7712211-7712513	AT1G21928.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21925.1); Has 45 Blast hits to 45 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21928.1p  transcript_id AT1G21928.1  protein_id AT1G21928.1p  transcript_id AT1G21928.1  
At1g21930	chr1:007713466	0.0	W/7713466-7713515,7714052-7714298	AT1G21930.1  CDS  gene_syn T26F17.22, T26F17_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G42150.3); Has 24 Blast hits to 24 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21930.1p  transcript_id AT1G21930.1  protein_id AT1G21930.1p  transcript_id AT1G21930.1  
At1g21940	chr1:007716816	0.0	C/7716816-7716975,7715170-7715561	AT1G21940.1  CDS  gene_syn T26F17.16, T26F17_16  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21950.1); Has 11 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21940.1p  transcript_id AT1G21940.1  protein_id AT1G21940.1p  transcript_id AT1G21940.1  
At1g21945	chr1:007717826	0.0	W/7717826-7722120	AT1G21945.1  mRNA_TE_gene  pseudo  gene_syn T26F17.17, T26F17_17  note Transposable element gene, copia-like retrotransposon family, has a 1.7e-243 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At1g21950	chr1:007723624	0.0	C/7723624-7723863,7723439-7723570	AT1G21950.1  CDS  gene_syn T26F17.18, T26F17_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21950.1p  transcript_id AT1G21950.1  protein_id AT1G21950.1p  transcript_id AT1G21950.1  
At1g21960	chr1:007725972	0.0	W/7725972-7726586	AT1G21960.1  CDS  gene_syn T26F17.19, T26F17_19  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G18760.1); Has 5524 Blast hits to 5512 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 2108; Fungi - 346; Plants - 2225; Viruses - 7; Other Eukaryotes - 838 (source: NCBI BLink).  protein_id AT1G21960.1p  transcript_id AT1G21960.1  protein_id AT1G21960.1p  transcript_id AT1G21960.1  
At1g21970	chr1:007729520	0.0	C/7729520-7729571,7727750-7728414	AT1G21970.1  CDS  gene_syn EMB 212, EMB212, EMBRYO DEFECTIVE 212, LEAFY COTYLEDON 1, LEC1, NF-YB9, NUCLEAR FACTOR Y, SUBUNIT B9, T26F17.20, T26F17_20  gene LEC1  function Transcriptional activator of genes required for both embryo maturation and cellular differentiation. Sequence is similar to HAP3 subunit of the CCAAT-box binding factor. HAP3 subunit is divided into three domains: an amino-terminal A domain, a central B domain, and a carboxyl-terminal C domain. LEC1 shared high similarity with other HAP3 homologs only in central, B domain. LEC1 is required for the specification of cotyledon identity and the completion of embryo maturation. It was sufficient to induce embryogenic programs in vegetative cells, suggesting that LEC1 is a major embryonic regulator that mediates the switch between embryo and vegetative development. Mutants are desiccation intolerant, have trichomes on cotyledons and exhibit precocious meristem activation. Levels of the ABI3 and FUS3 transcripts were significantly reduced in developing siliques of the lec1-1 mutants, indicating that LEC1 down-regulates FUS3 and ABI3.When LEC1 is overexpressed from an inducible promoter, the expression of numerous genes involved in fatty acid biosynthesis is increased suggesting a role in positive regulation of FA biosynthesis.  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||IEA  go_process response to heat|GO:0009408|10759505|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|9657152|IMP  go_process somatic embryogenesis|GO:0010262|16034595|IMP  go_process positive regulation of gene-specific transcription|GO:0043193|19207209|IDA  go_process positive regulation of fatty acid biosynthetic process|GO:0045723|18689444|IMP  go_process positive regulation of transcription, DNA-dependent|GO:0045893|18689444|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9657152|ISS  go_function transcription activator activity|GO:0016563|19207209|IDA  product LEC1 (LEAFY COTYLEDON 1); transcription activator/ transcription factor  note LEAFY COTYLEDON 1 (LEC1); FUNCTIONS IN: transcription factor activity, transcription activator activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus, intracellular; EXPRESSED IN: stem, cultured somatic embryo, leaf, endosperm, seed; EXPRESSED DURING: seed maturation stage, C globular stage, E expanded cotyledon stage, D bilateral stage, B proembryo stage; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Histone-fold (InterPro:IPR009072), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6); transcription activator/ transcription activator binding / transcription factor (TAIR:AT5G47670.2); Has 972 Blast hits to 972 proteins in 178 species: Archae - 2; Bacteria - 0; Metazoa - 387; Fungi - 221; Plants - 292; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT1G21970.1p  transcript_id AT1G21970.1  protein_id AT1G21970.1p  transcript_id AT1G21970.1  
At1g21973	chr1:007730911	0.0	C/7730911-7731144	AT1G21973.1  pseudogenic_transcript  pseudo  function Encodes a Plant thionin family protein [pseudogene]  
At1g21975	chr1:007732280	0.0	W/7732280-7732468	AT1G21975.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G21975.1p  transcript_id AT1G21975.1  protein_id AT1G21975.1p  transcript_id AT1G21975.1  
At1g21980	chr1:007735053	0.0	W/7735053-7736149,7736244-7736408,7736577-7736742,7736957-7737067,7737148-7737341,7737431-7737561,7737647-7737740,7738009-7738309	AT1G21980.1  CDS  gene_syn ATPIP5K1, ATPIPK1, PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE, PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 1  gene ATPIP5K1  function Type I phosphatidylinositol-4-phosphate 5-kinase. Preferentially phosphorylates PtdIns4P. Induced by water stress and abscisic acid in Arabidopsis thaliana. Expressed in procambial cells of leaves, flowers and roots. A N-terminal Membrane Occupation and Recognition Nexus (MORN)affects enzyme activity and distribution.  go_component cellular_component|GO:0005575||ND  go_process hyperosmotic response|GO:0006972|17197438|IDA  go_function actin monomer binding|GO:0003785|17379598|IDA  go_function phosphatidylinositol phosphate kinase activity|GO:0016307|11672432|IDA  go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308|15949803|IDA  go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308||ISS  go_function actin filament binding|GO:0051015|17379598|IDA  product ATPIP5K1 (PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 1); 1-phosphatidylinositol-4-phosphate 5-kinase/ actin filament binding / actin monomer binding / phosphatidylinositol phosphate kinase  note PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 1 (ATPIP5K1); FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity, actin filament binding, phosphatidylinositol phosphate kinase activity, actin monomer binding; INVOLVED IN: hyperosmotic response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, plant (InterPro:IPR017163), MORN motif (InterPro:IPR003409), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: 1-phosphatidylinositol-4-phosphate 5-kinase, putative / PIP kinase, putative / PtdIns(4)P-5-kinase, putative / diphosphoinositide kinase, putative (TAIR:AT1G77740.1); Has 23163 Blast hits to 6365 proteins in 385 species: Archae - 0; Bacteria - 2308; Metazoa - 3798; Fungi - 291; Plants - 663; Viruses - 0; Other Eukaryotes - 16103 (source: NCBI BLink).  protein_id AT1G21980.1p  transcript_id AT1G21980.1  protein_id AT1G21980.1p  transcript_id AT1G21980.1  
At1g21990	chr1:007741162	0.0	C/7741162-7742106,7740933-7741073,7740530-7740841	AT1G21990.1  CDS  gene_syn F2E2.2, F2E2_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G29930.3); Has 1024 Blast hits to 994 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1024; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21990.1p  transcript_id AT1G21990.1  protein_id AT1G21990.1p  transcript_id AT1G21990.1  
At1g22000	chr1:007744189	0.0	W/7744189-7745145,7745232-7745369,7745442-7745710,7746043-7746070,7746170-7746334,7746372-7746557,7746683-7747123	AT1G22000.1  CDS  gene_syn F2E2.4, F2E2_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22060.1); Has 11324 Blast hits to 8219 proteins in 529 species: Archae - 104; Bacteria - 638; Metazoa - 5767; Fungi - 684; Plants - 1525; Viruses - 37; Other Eukaryotes - 2569 (source: NCBI BLink).  protein_id AT1G22000.1p  transcript_id AT1G22000.1  protein_id AT1G22000.1p  transcript_id AT1G22000.1  
At1g22010	chr1:007749571	0.0	W/7749571-7750062	AT1G22010.1  CDS  gene_syn F2E2.5, F2E2_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22010.1p  transcript_id AT1G22010.1  protein_id AT1G22010.1p  transcript_id AT1G22010.1  
At1g22015	chr1:007753328	0.0	C/7753328-7753425,7753085-7753184,7752910-7752968,7752615-7752814,7752459-7752522,7752310-7752382,7752115-7752235,7751932-7752019,7751711-7751836,7751495-7751604,7751225-7751382	AT1G22015.1  CDS  gene_syn DD46  gene DD46  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process protein amino acid glycosylation|GO:0006486||IEA  go_function galactosyltransferase activity|GO:0008378||IEA  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product DD46; galactosyltransferase/ transferase, transferring hexosyl groups  note DD46; FUNCTIONS IN: transferase activity, transferring hexosyl groups, galactosyltransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: leaf whorl, embryo, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: galactosyltransferase family protein (TAIR:AT1G77810.2); Has 1233 Blast hits to 1228 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 922; Fungi - 6; Plants - 283; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT1G22015.1p  transcript_id AT1G22015.1  protein_id AT1G22015.1p  transcript_id AT1G22015.1  
At1g22020	chr1:007754599	0.0	W/7754599-7755666,7755820-7756225,7756646-7756747,7756864-7757087	AT1G22020.1  CDS  gene_syn F2E2.7, F2E2_7, SHM6, serine hydroxymethyltransferase 6  gene SHM6  function Encodes a putative serine hydroxymethyltransferase.  go_process glycine metabolic process|GO:0006544||IEA  go_process L-serine metabolic process|GO:0006563||IEA  go_function catalytic activity|GO:0003824||IEA  go_function glycine hydroxymethyltransferase activity|GO:0004372||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_component cellular_component|GO:0005575||ND  go_process glycine metabolic process|GO:0006544||ISS  go_process L-serine metabolic process|GO:0006563||ISS  go_function glycine hydroxymethyltransferase activity|GO:0004372||ISS  product SHM6 (serine hydroxymethyltransferase 6); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding  note serine hydroxymethyltransferase 6 (SHM6); FUNCTIONS IN: pyridoxal phosphate binding, glycine hydroxymethyltransferase activity, catalytic activity; INVOLVED IN: glycine metabolic process, L-serine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Glycine hydroxymethyltransferase (InterPro:IPR001085); BEST Arabidopsis thaliana protein match is: SHM7 (serine hydroxymethyltransferase 7); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding (TAIR:AT1G36370.1); Has 8165 Blast hits to 8146 proteins in 1617 species: Archae - 141; Bacteria - 3453; Metazoa - 297; Fungi - 186; Plants - 213; Viruses - 6; Other Eukaryotes - 3869 (source: NCBI BLink).  protein_id AT1G22020.1p  transcript_id AT1G22020.1  protein_id AT1G22020.1p  transcript_id AT1G22020.1  
At1g22030	chr1:007760065	0.0	C/7760065-7760415,7759337-7759987	AT1G22030.1  CDS  gene_syn F2E2.8, F2E2_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77855.1); Has 60 Blast hits to 60 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22030.1p  transcript_id AT1G22030.1  protein_id AT1G22030.1p  transcript_id AT1G22030.1  
At1g22040	chr1:007768370	0.0	W/7768370-7769797	AT1G22040.1  CDS  gene_syn F2E2.11, F2E2_11  go_component chloroplast|GO:0009507||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT1G55270.1); Has 8530 Blast hits to 4244 proteins in 221 species: Archae - 18; Bacteria - 386; Metazoa - 6931; Fungi - 33; Plants - 777; Viruses - 68; Other Eukaryotes - 317 (source: NCBI BLink).  protein_id AT1G22040.1p  transcript_id AT1G22040.1  protein_id AT1G22040.1p  transcript_id AT1G22040.1  
At1g22050	chr1:007771897	0.0	W/7771897-7772029,7772485-7772655,7772788-7772843	AT1G22050.1  CDS  gene_syn F2E2.12, F2E2_12, MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 6 PRECURSOR, MUB6  gene MUB6  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product MUB6 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 6 PRECURSOR)  note MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 6 PRECURSOR (MUB6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Membrane-anchored ubiquitin-fold protein, HCG-1 (InterPro:IPR017000), Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: MUB5 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 5 PRECURSOR) (TAIR:AT1G77870.1); Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22050.1p  transcript_id AT1G22050.1  protein_id AT1G22050.1p  transcript_id AT1G22050.1  
At1g22060	chr1:007780509	0.0	C/7780509-7780586,7780155-7780355,7779947-7780069,7779672-7779836,7774704-7779458,7774241-7774396,7773967-7774068,7773743-7773885,7773373-7773649	AT1G22060.1  CDS  gene_syn F2E2.13, F2E2_13  go_component vacuole|GO:0005773|15539469|IDA  product unknown protein  note LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G22000.1); Has 67094 Blast hits to 30189 proteins in 1408 species: Archae - 880; Bacteria - 6261; Metazoa - 35085; Fungi - 5326; Plants - 2622; Viruses - 293; Other Eukaryotes - 16627 (source: NCBI BLink).  protein_id AT1G22060.1p  transcript_id AT1G22060.1  protein_id AT1G22060.1p  transcript_id AT1G22060.1  
At1g22065	chr1:007785889	0.0	W/7785889-7786107	AT1G22065.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22065.1p  transcript_id AT1G22065.1  protein_id AT1G22065.1p  transcript_id AT1G22065.1  
At1g22067	chr1:007787391	0.0	W/7787391-7787525	AT1G22067.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G22067.1p  transcript_id AT1G22067.1  protein_id AT1G22067.1p  transcript_id AT1G22067.1  
At1g22070	chr1:007789651	0.0	W/7789651-7789656,7789989-7790189,7790276-7790362,7790498-7790557,7790633-7790710,7790797-7790860,7790961-7791232,7791309-7791542,7791669-7791821	AT1G22070.1  CDS  gene_syn F2E2.14, F2E2_14, TGA3, TRANSCRIPTION FACTOR TGA3  gene TGA3  function Encodes a transcription factor. Like other TGAla-related factors, TGA3 has a highly conserved bZIP region and exhibits similar DNA-binding properties.  go_component nucleus|GO:0005634||IEA  go_process systemic acquired resistance, salicylic acid mediated signaling pathway|GO:0009862|10659709|IPI  go_process defense response to bacterium|GO:0042742|17369431|IMP  go_function DNA binding|GO:0003677|8003690|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700|8003690|IDA  go_function transcription factor activity|GO:0003700||ISS  go_function protein binding|GO:0005515|10659709|IPI  go_function protein binding|GO:0005515|8672891|IDA  go_function calmodulin binding|GO:0005516|11782485|TAS  product TGA3; DNA binding / calmodulin binding / protein binding / transcription factor  note TGA3; FUNCTIONS IN: protein binding, transcription factor activity, calmodulin binding, DNA binding; INVOLVED IN: defense response to bacterium, systemic acquired resistance, salicylic acid mediated signaling pathway; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP family transcription factor (TAIR:AT1G77920.1); Has 648 Blast hits to 647 proteins in 80 species: Archae - 0; Bacteria - 38; Metazoa - 5; Fungi - 21; Plants - 492; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).  protein_id AT1G22070.1p  transcript_id AT1G22070.1  protein_id AT1G22070.1p  transcript_id AT1G22070.1  
At1g22080	chr1:007793811	0.0	C/7793811-7794089,7793389-7793735,7793225-7793312,7792790-7792977,7792628-7792715,7792404-7792412	AT1G22080.1  CDS  gene_syn F2E2.15, F2E2_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19515.2); Has 46 Blast hits to 46 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 2; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22080.1p  transcript_id AT1G22080.1  protein_id AT1G22080.1p  transcript_id AT1G22080.1  
At1g22080	chr1:007793811	0.0	C/7793811-7794089,7793389-7793735,7793225-7793312,7792790-7792977,7792628-7792715,7792404-7792412	AT1G22080.2  CDS  gene_syn F2E2.15, F2E2_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19515.2); Has 46 Blast hits to 46 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 2; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22080.2p  transcript_id AT1G22080.2  protein_id AT1G22080.2p  transcript_id AT1G22080.2  
At1g22090	chr1:007795721	0.0	W/7795721-7795774,7795883-7796032,7796133-7796319,7796406-7796527,7796677-7796763,7796863-7797252	AT1G22090.1  CDS  gene_syn F2E2.16, F2E2_16, emb2204, embryo defective 2204  gene emb2204  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product emb2204 (embryo defective 2204)  note embryo defective 2204 (emb2204); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02770.1); Has 74 Blast hits to 73 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22090.1p  transcript_id AT1G22090.1  protein_id AT1G22090.1p  transcript_id AT1G22090.1  
At1g22100	chr1:007799926	0.0	C/7799926-7800030,7799594-7799800,7799315-7799462,7799085-7799125,7798886-7798996,7798221-7798805,7798023-7798151	AT1G22100.1  CDS  gene_syn F2E2.17, F2E2_17  go_function ATP binding|GO:0005524||IEA  go_function inositol pentakisphosphate 2-kinase activity|GO:0035299||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product ATP binding / inositol pentakisphosphate 2-kinase  note ATP binding / inositol pentakisphosphate 2-kinase; FUNCTIONS IN: inositol pentakisphosphate 2-kinase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Inositol-pentakisphosphate 2-kinase, metazoa (InterPro:IPR018009), Inositol-pentakisphosphate 2-kinase (InterPro:IPR009286); BEST Arabidopsis thaliana protein match is: ATP binding / inositol pentakisphosphate 2-kinase (TAIR:AT1G59312.1); Has 169 Blast hits to 165 proteins in 64 species: Archae - 0; Bacteria - 0; Metazoa - 89; Fungi - 14; Plants - 53; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G22100.1p  transcript_id AT1G22100.1  protein_id AT1G22100.1p  transcript_id AT1G22100.1  
At1g22110	chr1:007801625	0.0	C/7801625-7802473	AT1G22110.1  CDS  gene_syn F2E2.18, F2E2_18  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_component chloroplast|GO:0009507||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  product structural constituent of ribosome  note structural constituent of ribosome; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30e (InterPro:IPR000231); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77932.1); Has 4599 Blast hits to 1714 proteins in 218 species: Archae - 10; Bacteria - 592; Metazoa - 1350; Fungi - 397; Plants - 177; Viruses - 111; Other Eukaryotes - 1962 (source: NCBI BLink).  protein_id AT1G22110.1p  transcript_id AT1G22110.1  protein_id AT1G22110.1p  transcript_id AT1G22110.1  
At1g22120	chr1:007809567	0.0	C/7809567-7809632,7808875-7809132,7808579-7808776,7808391-7808488,7808178-7808300,7808021-7808089,7807799-7807906,7807606-7807707,7807313-7807427,7807033-7807101,7806838-7806944,7806655-7806730	AT1G22120.1  CDS  gene_syn F2E2.19, F2E2_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 32 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 2; Plants - 8; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G22120.1p  transcript_id AT1G22120.1  protein_id AT1G22120.1p  transcript_id AT1G22120.1  
At1g22130	chr1:007814075	0.0	C/7814075-7814259,7813922-7813975,7813797-7813829,7813680-7813698,7813535-7813596,7813372-7813399,7813231-7813292,7812883-7813143,7812598-7812763,7812387-7812524	AT1G22130.1  CDS  gene_syn AGAMOUS-LIKE 104, AGL104, F2E2.20, F2E2_20  gene AGL104  function Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL104 is expressed in pollen.It forms heterodimers with other MICK family members (AGL65 and AGL30). Involved in late stages of pollen development and pollen tube growth.  go_component nucleus|GO:0005634||IEA  go_process pollen development|GO:0009555|19211705|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product AGL104 (AGAMOUS-LIKE 104); DNA binding / transcription factor  note AGAMOUS-LIKE 104 (AGL104); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: pollen development; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL66 (AGAMOUS-LIKE 66); transcription factor (TAIR:AT1G77980.1); Has 4354 Blast hits to 4353 proteins in 567 species: Archae - 0; Bacteria - 0; Metazoa - 545; Fungi - 205; Plants - 3548; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT1G22130.1p  transcript_id AT1G22130.1  protein_id AT1G22130.1p  transcript_id AT1G22130.1  
At1g22140	chr1:007815494	0.0	C/7815494-7815577,7815158-7815292	AT1G22140.1  CDS  gene_syn F2E2.21, F2E2_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 27 Blast hits to 27 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22140.1p  transcript_id AT1G22140.1  protein_id AT1G22140.1p  transcript_id AT1G22140.1  
At1g22140	chr1:007815494	0.0	C/7815494-7815577,7815229-7815292,7815083-7815129	AT1G22140.2  CDS  gene_syn F2E2.21, F2E2_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 17 Blast hits to 17 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22140.2p  transcript_id AT1G22140.2  protein_id AT1G22140.2p  transcript_id AT1G22140.2  
At1g22150	chr1:007818361	0.0	W/7818361-7818690,7818773-7818821,7818941-7819148,7819244-7819418,7819500-7819565,7819645-7819758,7819855-7819971,7820065-7820478,7820566-7820756,7820858-7820943,7821035-7821111,7821201-7821344	AT1G22150.1  CDS  gene_syn F2E2.22, F2E2_22, SULFATE TANSPORTER SULTR1;3, SULTR1;3  gene SULTR1;3  function sulfate transporter Sultr1;3  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process sulfate transport|GO:0008272||IEA  go_function sulfate transmembrane transporter activity|GO:0015116||ISS  product SULTR1;3; sulfate transmembrane transporter  note SULTR1;3; FUNCTIONS IN: sulfate transmembrane transporter activity; INVOLVED IN: sulfate transport, transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: sperm cell, leaf whorl, petal, flower, pollen tube; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sulphate transporter (InterPro:IPR011547), Sulphate transporter/antisigma-factor antagonist STAS (InterPro:IPR002645), Sulphate anion transporter, conserved site (InterPro:IPR018045), Sulphate anion transporter (InterPro:IPR001902); BEST Arabidopsis thaliana protein match is: SULTR1;2 (SULFATE TRANSPORTER 1;2); sulfate transmembrane transporter (TAIR:AT1G78000.2); Has 6736 Blast hits to 6685 proteins in 1103 species: Archae - 34; Bacteria - 3451; Metazoa - 979; Fungi - 295; Plants - 325; Viruses - 0; Other Eukaryotes - 1652 (source: NCBI BLink).  protein_id AT1G22150.1p  transcript_id AT1G22150.1  protein_id AT1G22150.1p  transcript_id AT1G22150.1  
At1g22160	chr1:007823238	0.0	W/7823238-7823533,7823627-7823774	AT1G22160.1  CDS  gene_syn F2E2.23, F2E2_23  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product senescence-associated protein-related  note senescence-associated protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: senescence-associated protein-related (TAIR:AT1G78020.1); Has 281 Blast hits to 281 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22160.1p  transcript_id AT1G22160.1  protein_id AT1G22160.1p  transcript_id AT1G22160.1  
At1g22170	chr1:007826603	0.0	W/7826603-7826828,7826923-7827265,7827358-7827514,7827593-7827694,7827793-7827912,7827999-7828055	AT1G22170.1  CDS  gene_syn F16L1.10, F16L1_10  go_component chloroplast|GO:0009507||IEA  go_process glycolysis|GO:0006096||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function intramolecular transferase activity, phosphotransferases|GO:0016868||IEA  go_process metabolic process|GO:0008152||ISS  go_function catalytic activity|GO:0003824||ISS  product phosphoglycerate/bisphosphoglycerate mutase family protein  note phosphoglycerate/bisphosphoglycerate mutase family protein; FUNCTIONS IN: intramolecular transferase activity, phosphotransferases, catalytic activity; INVOLVED IN: glycolysis, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078), Phosphoglycerate/bisphosphoglycerate mutase (InterPro:IPR001345), Phosphoglycerate mutase 1 (InterPro:IPR005952); BEST Arabidopsis thaliana protein match is: PGM (PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE); catalytic/ intramolecular transferase, phosphotransferases (TAIR:AT1G78050.1); Has 7389 Blast hits to 7278 proteins in 1221 species: Archae - 36; Bacteria - 4021; Metazoa - 513; Fungi - 222; Plants - 92; Viruses - 0; Other Eukaryotes - 2505 (source: NCBI BLink).  protein_id AT1G22170.1p  transcript_id AT1G22170.1  protein_id AT1G22170.1p  transcript_id AT1G22170.1  
At1g22180	chr1:007829380	0.0	C/7829380-7829436,7829191-7829289,7828867-7829109,7828434-7828784	AT1G22180.1  CDS  gene_syn F16L1.9, F16L1_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  note SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT4G08690.2); Has 1547 Blast hits to 1547 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 710; Fungi - 355; Plants - 294; Viruses - 0; Other Eukaryotes - 188 (source: NCBI BLink).  protein_id AT1G22180.1p  transcript_id AT1G22180.1  protein_id AT1G22180.1p  transcript_id AT1G22180.1  
At1g22180	chr1:007829380	0.0	C/7829380-7829436,7829191-7829289,7828867-7829109,7828434-7828784	AT1G22180.3  CDS  gene_syn F16L1.9, F16L1_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  note SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT4G08690.2); Has 1547 Blast hits to 1547 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 710; Fungi - 355; Plants - 294; Viruses - 0; Other Eukaryotes - 188 (source: NCBI BLink).  protein_id AT1G22180.3p  transcript_id AT1G22180.3  protein_id AT1G22180.3p  transcript_id AT1G22180.3  
At1g22180	chr1:007829671	0.0	C/7829671-7829745,7829380-7829556,7829191-7829289,7828867-7829109,7828434-7828784	AT1G22180.2  CDS  gene_syn F16L1.9, F16L1_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  note SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT4G08690.2); Has 1880 Blast hits to 1880 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 814; Fungi - 399; Plants - 444; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).  protein_id AT1G22180.2p  transcript_id AT1G22180.2  protein_id AT1G22180.2p  transcript_id AT1G22180.2  
At1g22190	chr1:007836245	0.0	W/7836245-7837030	AT1G22190.1  CDS  gene_syn F16L1.8, F16L1_8  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634|9192694|IC  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677|9192694|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9192694|ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: RAP2.4 (related to AP2 4); DNA binding / transcription factor (TAIR:AT1G78080.1); Has 3906 Blast hits to 3758 proteins in 206 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 3863; Viruses - 7; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT1G22190.1p  transcript_id AT1G22190.1  protein_id AT1G22190.1p  transcript_id AT1G22190.1  
At1g22200	chr1:007840461	0.0	C/7840461-7840602,7840218-7840291,7840058-7840141,7839863-7839943,7839633-7839713,7839351-7839443,7838986-7839165,7838833-7838900,7838692-7838743,7838393-7838446,7838208-7838304,7838104-7838114	AT1G22200.2  CDS  gene_syn F16L1.7, F16L1_7  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1692 (InterPro:IPR012936); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G36050.2); Has 847 Blast hits to 769 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 376; Fungi - 181; Plants - 112; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink).  protein_id AT1G22200.2p  transcript_id AT1G22200.2  protein_id AT1G22200.2p  transcript_id AT1G22200.2  
At1g22200	chr1:007840461	0.0	C/7840461-7840602,7840218-7840291,7840058-7840141,7839863-7839943,7839633-7839713,7839351-7839443,7838986-7839165,7838833-7838900,7838692-7838743,7838393-7838446,7838212-7838304,7838048-7838114,7837857-7837948	AT1G22200.1  CDS  gene_syn F16L1.7, F16L1_7  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1692 (InterPro:IPR012936); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G36050.2); Has 903 Blast hits to 793 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 386; Fungi - 184; Plants - 142; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink).  protein_id AT1G22200.1p  transcript_id AT1G22200.1  protein_id AT1G22200.1p  transcript_id AT1G22200.1  
At1g22210	chr1:007841518	0.0	W/7841518-7841652,7841919-7842059,7842198-7842269,7842373-7842456,7842538-7842597,7842703-7842804,7842972-7843049,7843209-7843278,7843387-7843457,7843558-7843650,7843756-7843812	AT1G22210.1  CDS  gene_syn F16L1.6, F16L1_6  go_process trehalose biosynthetic process|GO:0005992||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process trehalose biosynthetic process|GO:0005992||ISS  go_function trehalose-phosphatase activity|GO:0004805||ISS  product trehalose-6-phosphate phosphatase, putative  note trehalose-6-phosphate phosphatase, putative; FUNCTIONS IN: catalytic activity, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: ATTPPB (TREHALOSE-6-PHOSPHATE PHOSPHATASE); trehalose-phosphatase (TAIR:AT1G78090.1); Has 1455 Blast hits to 1451 proteins in 515 species: Archae - 29; Bacteria - 748; Metazoa - 195; Fungi - 101; Plants - 268; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).  protein_id AT1G22210.1p  transcript_id AT1G22210.1  protein_id AT1G22210.1p  transcript_id AT1G22210.1  
At1g22220	chr1:007846694	0.0	W/7846694-7847638	AT1G22220.1  CDS  gene_syn F16L1.5, F16L1_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G78100.1); Has 82 Blast hits to 81 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22220.1p  transcript_id AT1G22220.1  protein_id AT1G22220.1p  transcript_id AT1G22220.1  
At1g22230	chr1:007850093	0.0	W/7850093-7851037	AT1G22230.1  CDS  gene_syn F16L1.4, F16L1_4  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78110.1); Has 2751 Blast hits to 1875 proteins in 141 species: Archae - 2; Bacteria - 36; Metazoa - 1492; Fungi - 192; Plants - 112; Viruses - 74; Other Eukaryotes - 843 (source: NCBI BLink).  protein_id AT1G22230.1p  transcript_id AT1G22230.1  protein_id AT1G22230.1p  transcript_id AT1G22230.1  
At1g22240	chr1:007853084	0.0	W/7853084-7853943,7854027-7854189,7854270-7854433,7854513-7854768,7854859-7854963	AT1G22240.1  CDS  gene_syn APUM8, Arabidopsis Pumilio 8, F16L1.3, F16L1_3  gene APUM8  go_function RNA binding|GO:0003723||IEA  go_function binding|GO:0005488||IEA  go_function RNA binding|GO:0003723||ISS  product APUM8 (Arabidopsis Pumilio 8); RNA binding / binding  note Arabidopsis Pumilio 8 (APUM8); FUNCTIONS IN: RNA binding, binding; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding region (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: APUM7 (Arabidopsis Pumilio 7); RNA binding / binding (TAIR:AT1G78160.1); Has 2039 Blast hits to 1212 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 579; Fungi - 545; Plants - 407; Viruses - 0; Other Eukaryotes - 508 (source: NCBI BLink).  protein_id AT1G22240.1p  transcript_id AT1G22240.1  protein_id AT1G22240.1p  transcript_id AT1G22240.1  
At1g22250	chr1:007858961	0.0	W/7858961-7859176,7859262-7859648	AT1G22250.1  CDS  gene_syn F16L1.2, F16L1_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78170.1); Has 33 Blast hits to 33 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22250.1p  transcript_id AT1G22250.1  protein_id AT1G22250.1p  transcript_id AT1G22250.1  
At1g22260	chr1:007864998	0.0	C/7864998-7865142,7864867-7864916,7864449-7864656,7864231-7864356,7864051-7864149,7863190-7863866,7862862-7863110,7862649-7862777,7862457-7862525,7862274-7862384,7861753-7861860,7861558-7861668,7861402-7861488,7861161-7861247,7860957-7861070,7860792-7860875,7860659-7860718,7860160-7860261	AT1G22260.1  CDS  gene_syn T16E15.12, T16E15_12, ZYP1, ZYP1a  gene ZYP1a  function One of two nearly identical proteins (ZYP1b) identified by similarity to transverse filament (TF) proteins. These proteins are involved in chromosome synapsis during meiosis I and localize to the synaptonemal complex (SC). Single mutants have reduced fertility and double mutants (induced by RNAi) have severely reduced fertility.  go_component synaptonemal complex|GO:0000795|16230536|IDA  go_process synapsis|GO:0007129|16230536|IMP  go_process reciprocal meiotic recombination|GO:0007131|16230536|IMP  product ZYP1a  note ZYP1a; INVOLVED IN: synapsis, reciprocal meiotic recombination; LOCATED IN: synaptonemal complex; BEST Arabidopsis thaliana protein match is: ZYP1b (TAIR:AT1G22275.1); Has 136206 Blast hits to 67304 proteins in 2172 species: Archae - 1406; Bacteria - 18852; Metazoa - 63521; Fungi - 9227; Plants - 4225; Viruses - 762; Other Eukaryotes - 38213 (source: NCBI BLink).  protein_id AT1G22260.1p  transcript_id AT1G22260.1  protein_id AT1G22260.1p  transcript_id AT1G22260.1  
At1g22270	chr1:007865548	0.0	W/7865548-7865922	AT1G22270.1  CDS  gene_syn T16E15.11, T16E15_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF343 (InterPro:IPR005651); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78190.1); Has 289 Blast hits to 289 proteins in 134 species: Archae - 0; Bacteria - 0; Metazoa - 119; Fungi - 81; Plants - 34; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT1G22270.1p  transcript_id AT1G22270.1  protein_id AT1G22270.1p  transcript_id AT1G22270.1  
At1g22275	chr1:007867245	0.0	W/7867245-7867389,7867471-7867520,7867767-7867974,7868067-7868192,7868275-7868373,7868578-7869254,7869334-7869582,7869654-7869782,7869906-7869974,7870048-7870158,7870459-7870566,7870651-7870761,7870830-7870916,7871062-7871133,7871250-7871330,7871403-7871486,7871553-7871615,7871965-7872066	AT1G22275.1  CDS  gene_syn ZYP1, ZYP1b  gene ZYP1b  function One of two nearly identical proteins (ZYP1a) identified by similarity to transverse filament (TF) proteins. These proteins are involved in chromosome synapsis during meiosis I and localize to the synaptonemal complex (SC). Single mutants have reduced fertility and double mutants (induced by RNAi) have severely reduced fertility.  go_component synaptonemal complex|GO:0000795|16230536|IDA  go_process synapsis|GO:0007129|16230536|IMP  go_process reciprocal meiotic recombination|GO:0007131|16230536|IMP  product ZYP1b  note ZYP1b; INVOLVED IN: synapsis, reciprocal meiotic recombination; LOCATED IN: synaptonemal complex; EXPRESSED IN: shoot apex, embryo, pedicel, flower, seed; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: ZYP1a (TAIR:AT1G22260.1); Has 113921 Blast hits to 57904 proteins in 1981 species: Archae - 1278; Bacteria - 14266; Metazoa - 53350; Fungi - 7742; Plants - 3686; Viruses - 612; Other Eukaryotes - 32987 (source: NCBI BLink).  protein_id AT1G22275.1p  transcript_id AT1G22275.1  protein_id AT1G22275.1p  transcript_id AT1G22275.1  
At1g22280	chr1:007874236	0.0	W/7874236-7874271,7874403-7874642,7874731-7875007,7875101-7875255,7875359-7875496	AT1G22280.1  CDS  gene_syn T16E15.10, T16E15_10  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function catalytic activity|GO:0003824||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT1G34750.1); Has 5050 Blast hits to 5040 proteins in 602 species: Archae - 7; Bacteria - 922; Metazoa - 1271; Fungi - 506; Plants - 1288; Viruses - 11; Other Eukaryotes - 1045 (source: NCBI BLink).  protein_id AT1G22280.1p  transcript_id AT1G22280.1  protein_id AT1G22280.1p  transcript_id AT1G22280.1  
At1g22280	chr1:007874236	0.0	W/7874236-7874271,7874403-7874642,7874731-7875054	AT1G22280.2  CDS  gene_syn T16E15.10, T16E15_10  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function catalytic activity|GO:0003824||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT1G34750.1); Has 2894 Blast hits to 2887 proteins in 260 species: Archae - 0; Bacteria - 115; Metazoa - 1037; Fungi - 221; Plants - 930; Viruses - 4; Other Eukaryotes - 587 (source: NCBI BLink).  protein_id AT1G22280.2p  transcript_id AT1G22280.2  protein_id AT1G22280.2p  transcript_id AT1G22280.2  
At1g22290	chr1:007877849	0.0	C/7877849-7877915,7877453-7877771,7877307-7877373,7877123-7877199,7876966-7877026	AT1G22290.1  CDS  gene_syn T16E15.9, T16E15_9  go_function protein phosphorylated amino acid binding|GO:0045309|10631267|TAS  product 14-3-3 protein GF14, putative (GRF10)  note 14-3-3 protein GF14, putative (GRF10); FUNCTIONS IN: protein phosphorylated amino acid binding; EXPRESSED IN: pedicel, flower, root, pollen tube; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: GRF10 (GENERAL REGULATORY FACTOR 10); ATP binding / protein binding / protein phosphorylated amino acid binding (TAIR:AT1G22300.3); Has 1941 Blast hits to 1939 proteins in 282 species: Archae - 0; Bacteria - 0; Metazoa - 959; Fungi - 202; Plants - 521; Viruses - 0; Other Eukaryotes - 259 (source: NCBI BLink).  protein_id AT1G22290.1p  transcript_id AT1G22290.1  protein_id AT1G22290.1p  transcript_id AT1G22290.1  
At1g22300	chr1:007881037	0.0	C/7881037-7881103,7880378-7880684,7880083-7880170,7879866-7879975,7879601-7879784	AT1G22300.3  CDS  gene_syn 14-3-3 PROTEIN G-BOX FACTOR14 EPSILON, 14-3-3EPSILON, GENERAL REGULATORY FACTOR 10, GF14 EPSILON, GRF10  gene GRF10  function Encodes a 14-3-3 protein. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1  go_component mitochondrion|GO:0005739|17137349|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function ATP binding|GO:0005524|17137349|IDA  go_component cytoplasm|GO:0005737||IDA  go_component plasma membrane|GO:0005886||IDA  go_component chloroplast stroma|GO:0009570|9276953|IDA  go_process brassinosteroid mediated signaling|GO:0009742|17681130|IPI  go_function protein binding|GO:0005515||NAS  go_function protein phosphorylated amino acid binding|GO:0045309|10631267|TAS  product GRF10 (GENERAL REGULATORY FACTOR 10); ATP binding / protein binding / protein phosphorylated amino acid binding  note GENERAL REGULATORY FACTOR 10 (GRF10); FUNCTIONS IN: protein phosphorylated amino acid binding, protein binding, ATP binding; INVOLVED IN: brassinosteroid mediated signaling; LOCATED IN: mitochondrion, chloroplast stroma, plasma membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: GRF11 (GENERAL REGULATORY FACTOR 11); ATPase binding / amino acid binding / protein binding / protein phosphorylated amino acid binding (TAIR:AT1G34760.2); Has 2098 Blast hits to 2090 proteins in 293 species: Archae - 0; Bacteria - 0; Metazoa - 1027; Fungi - 226; Plants - 539; Viruses - 0; Other Eukaryotes - 306 (source: NCBI BLink).  protein_id AT1G22300.3p  transcript_id AT1G22300.3  protein_id AT1G22300.3p  transcript_id AT1G22300.3  
At1g22300	chr1:007881037	0.0	C/7881037-7881103,7880378-7880684,7880083-7880170,7879866-7879975,7879636-7879784,7879244-7879287	AT1G22300.2  CDS  gene_syn 14-3-3 PROTEIN G-BOX FACTOR14 EPSILON, 14-3-3EPSILON, GENERAL REGULATORY FACTOR 10, GF14 EPSILON, GRF10  gene GRF10  function Encodes a 14-3-3 protein. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1  go_component mitochondrion|GO:0005739|17137349|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function ATP binding|GO:0005524|17137349|IDA  go_component cytoplasm|GO:0005737||IDA  go_component plasma membrane|GO:0005886||IDA  go_component chloroplast stroma|GO:0009570|9276953|IDA  go_process brassinosteroid mediated signaling|GO:0009742|17681130|IPI  go_function protein binding|GO:0005515||NAS  go_function protein phosphorylated amino acid binding|GO:0045309|10631267|TAS  product GRF10 (GENERAL REGULATORY FACTOR 10); ATP binding / protein binding / protein phosphorylated amino acid binding  note GENERAL REGULATORY FACTOR 10 (GRF10); FUNCTIONS IN: protein phosphorylated amino acid binding, protein binding, ATP binding; INVOLVED IN: brassinosteroid mediated signaling; LOCATED IN: mitochondrion, chloroplast stroma, plasma membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: GRF11 (GENERAL REGULATORY FACTOR 11); ATPase binding / amino acid binding / protein binding / protein phosphorylated amino acid binding (TAIR:AT1G34760.1); Has 2099 Blast hits to 2091 proteins in 293 species: Archae - 0; Bacteria - 0; Metazoa - 1027; Fungi - 226; Plants - 540; Viruses - 0; Other Eukaryotes - 306 (source: NCBI BLink).  protein_id AT1G22300.2p  transcript_id AT1G22300.2  protein_id AT1G22300.2p  transcript_id AT1G22300.2  
At1g22300	chr1:007881037	0.0	C/7881037-7881103,7880378-7880684,7880083-7880170,7879866-7879975,7879636-7879784,7879250-7879287,7879146-7879151	AT1G22300.1  CDS  gene_syn 14-3-3 PROTEIN G-BOX FACTOR14 EPSILON, 14-3-3EPSILON, GENERAL REGULATORY FACTOR 10, GF14 EPSILON, GRF10  gene GRF10  function Encodes a 14-3-3 protein. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1  go_component mitochondrion|GO:0005739|17137349|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function ATP binding|GO:0005524|17137349|IDA  go_component cytoplasm|GO:0005737||IDA  go_component plasma membrane|GO:0005886||IDA  go_component chloroplast stroma|GO:0009570|9276953|IDA  go_process brassinosteroid mediated signaling|GO:0009742|17681130|IPI  go_function protein binding|GO:0005515||NAS  go_function protein phosphorylated amino acid binding|GO:0045309|10631267|TAS  product GRF10 (GENERAL REGULATORY FACTOR 10); ATP binding / protein binding / protein phosphorylated amino acid binding  note GENERAL REGULATORY FACTOR 10 (GRF10); FUNCTIONS IN: protein phosphorylated amino acid binding, protein binding, ATP binding; INVOLVED IN: brassinosteroid mediated signaling; LOCATED IN: mitochondrion, chloroplast stroma, plasma membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: GRF11 (GENERAL REGULATORY FACTOR 11); ATPase binding / amino acid binding / protein binding / protein phosphorylated amino acid binding (TAIR:AT1G34760.2); Has 2101 Blast hits to 2093 proteins in 293 species: Archae - 0; Bacteria - 0; Metazoa - 1027; Fungi - 226; Plants - 540; Viruses - 0; Other Eukaryotes - 308 (source: NCBI BLink).  protein_id AT1G22300.1p  transcript_id AT1G22300.1  protein_id AT1G22300.1p  transcript_id AT1G22300.1  
At1g22310	chr1:007882536	0.0	C/7882536-7883644,7881714-7882179	AT1G22310.2  CDS  gene_syn MBD8, T16E15.7, T16E15_7  gene MBD8  function Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.  go_component nucleus|GO:0005634||IEA  go_process biological_process|GO:0008150||ND  go_function methyl-CpG binding|GO:0008327|12787239|ISS  product MBD8; methyl-CpG binding  note MBD8; FUNCTIONS IN: methyl-CpG binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AT hook, DNA-binding, conserved site (InterPro:IPR017956), DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); Has 111 Blast hits to 94 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 48; Fungi - 6; Plants - 40; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G22310.2p  transcript_id AT1G22310.2  protein_id AT1G22310.2p  transcript_id AT1G22310.2  
At1g22310	chr1:007883197	0.0	C/7883197-7883418,7882536-7883125,7881714-7882179	AT1G22310.1  CDS  gene_syn MBD8, T16E15.7, T16E15_7  gene MBD8  function Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.  go_component nucleus|GO:0005634||IEA  go_process biological_process|GO:0008150||ND  go_function methyl-CpG binding|GO:0008327|12787239|ISS  product MBD8; methyl-CpG binding  note MBD8; FUNCTIONS IN: methyl-CpG binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AT hook, DNA-binding, conserved site (InterPro:IPR017956), DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); Has 30 Blast hits to 30 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G22310.1p  transcript_id AT1G22310.1  protein_id AT1G22310.1p  transcript_id AT1G22310.1  
At1g22320	chr1:007884417	0.0	C/7884417-7884454	AT1G22320.1  tRNA  gene_syn 61385.TRNA-MET-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Met (anticodon: CAT)  transcript_id AT1G22320.1  
At1g22330	chr1:007886693	0.0	W/7886693-7886878,7886951-7887074,7887452-7887569,7887991-7888024,7888317-7888623,7889135-7889241	AT1G22330.1  CDS  gene_syn T16E15.6, T16E15_6  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA binding / nucleic acid binding / nucleotide binding  note RNA binding / nucleic acid binding / nucleotide binding; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT1G78260.1); Has 15716 Blast hits to 12796 proteins in 588 species: Archae - 4; Bacteria - 780; Metazoa - 9187; Fungi - 1619; Plants - 2589; Viruses - 0; Other Eukaryotes - 1537 (source: NCBI BLink).  protein_id AT1G22330.1p  transcript_id AT1G22330.1  protein_id AT1G22330.1p  transcript_id AT1G22330.1  
At1g22340	chr1:007891574	0.0	C/7891574-7892090,7890464-7891410	AT1G22340.1  CDS  gene_syn AtUGT85A7, T16E15.5, T16E15_5, UDP-glucosyl transferase 85A7  gene AtUGT85A7  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function glucuronosyltransferase activity|GO:0015020|17498920|ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product AtUGT85A7 (UDP-glucosyl transferase 85A7); UDP-glycosyltransferase/ glucuronosyltransferase/ transferase, transferring glycosyl groups  note UDP-glucosyl transferase 85A7 (AtUGT85A7); FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups, glucuronosyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: AtUGT85A2 (UDP-glucosyl transferase 85A2); UDP-glycosyltransferase/ glucuronosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT1G22360.1); Has 4778 Blast hits to 4734 proteins in 303 species: Archae - 0; Bacteria - 103; Metazoa - 1814; Fungi - 14; Plants - 2761; Viruses - 56; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G22340.1p  transcript_id AT1G22340.1  protein_id AT1G22340.1p  transcript_id AT1G22340.1  
At1g22350	chr1:007892878	0.0	C/7892878-7894498	AT1G22350.1  pseudogenic_transcript  pseudo  gene_syn T16E15.4  note pseudogene, putative UDP-glucose glucosyltransferase, similar to UDP-glucose glucosyltransferase GI:3928543 from (Arabidopsis thaliana); blastp match of 56% identity and 2.1e-151 P-value to GP|19911203|dbj|BAB86928.1||AB070753 glucosyltransferase-10 {Vigna angularis}  
At1g22360	chr1:007897020	0.0	C/7897020-7897527,7895068-7896005	AT1G22360.1  CDS  gene_syn AtUGT85A2, UDP-glucosyl transferase 85A2  gene AtUGT85A2  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function glucuronosyltransferase activity|GO:0015020|17498920|ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product AtUGT85A2 (UDP-glucosyl transferase 85A2); UDP-glycosyltransferase/ glucuronosyltransferase/ transferase, transferring glycosyl groups  note UDP-glucosyl transferase 85A2 (AtUGT85A2); FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups, glucuronosyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: AtUGT85A3 (UDP-glucosyl transferase 85A3); glucuronosyltransferase/ transcription factor/ transferase, transferring glycosyl groups (TAIR:AT1G22380.1); Has 4893 Blast hits to 4835 proteins in 290 species: Archae - 0; Bacteria - 46; Metazoa - 1935; Fungi - 10; Plants - 2777; Viruses - 95; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G22360.1p  transcript_id AT1G22360.1  protein_id AT1G22360.1p  transcript_id AT1G22360.1  
At1g22360	chr1:007897020	0.0	C/7897020-7897527,7895248-7896005,7895068-7895211	AT1G22360.2  CDS  gene_syn AtUGT85A2, UDP-glucosyl transferase 85A2  gene AtUGT85A2  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function glucuronosyltransferase activity|GO:0015020|17498920|ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product AtUGT85A2 (UDP-glucosyl transferase 85A2); UDP-glycosyltransferase/ glucuronosyltransferase/ transferase, transferring glycosyl groups  note UDP-glucosyl transferase 85A2 (AtUGT85A2); FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups, glucuronosyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: AtUGT85A3 (UDP-glucosyl transferase 85A3); glucuronosyltransferase/ transcription factor/ transferase, transferring glycosyl groups (TAIR:AT1G22380.1); Has 4749 Blast hits to 4697 proteins in 271 species: Archae - 0; Bacteria - 21; Metazoa - 1847; Fungi - 10; Plants - 2772; Viruses - 69; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G22360.2p  transcript_id AT1G22360.2  protein_id AT1G22360.2p  transcript_id AT1G22360.2  
At1g22370	chr1:007898116	0.0	C/7898116-7899045	AT1G22370.1  CDS  gene_syn AtUGT85A5, T16E15.2, T16E15_2, UDP-glucosyl transferase 85A5  gene AtUGT85A5  go_process metabolic process|GO:0008152||IEA  go_function glucuronosyltransferase activity|GO:0015020|17498920|ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product AtUGT85A5 (UDP-glucosyl transferase 85A5); glucuronosyltransferase/ transferase, transferring glycosyl groups  note UDP-glucosyl transferase 85A5 (AtUGT85A5); FUNCTIONS IN: transferase activity, transferring glycosyl groups, glucuronosyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: AtUGT85A2 (UDP-glucosyl transferase 85A2); UDP-glycosyltransferase/ glucuronosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT1G22360.1); Has 4818 Blast hits to 4797 proteins in 308 species: Archae - 0; Bacteria - 63; Metazoa - 1955; Fungi - 16; Plants - 2645; Viruses - 109; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G22370.1p  transcript_id AT1G22370.1  protein_id AT1G22370.1p  transcript_id AT1G22370.1  
At1g22370	chr1:007899363	0.0	C/7899363-7899879,7898116-7899038	AT1G22370.2  CDS  gene_syn AtUGT85A5, T16E15.2, T16E15_2, UDP-glucosyl transferase 85A5  gene AtUGT85A5  go_process metabolic process|GO:0008152||IEA  go_function glucuronosyltransferase activity|GO:0015020|17498920|ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product AtUGT85A5 (UDP-glucosyl transferase 85A5); glucuronosyltransferase/ transferase, transferring glycosyl groups  note UDP-glucosyl transferase 85A5 (AtUGT85A5); FUNCTIONS IN: transferase activity, transferring glycosyl groups, glucuronosyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: AtUGT85A2 (UDP-glucosyl transferase 85A2); UDP-glycosyltransferase/ glucuronosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT1G22360.1); Has 4997 Blast hits to 4937 proteins in 324 species: Archae - 0; Bacteria - 90; Metazoa - 1957; Fungi - 23; Plants - 2787; Viruses - 109; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT1G22370.2p  transcript_id AT1G22370.2  protein_id AT1G22370.2p  transcript_id AT1G22370.2  
At1g22380	chr1:007901816	0.0	C/7901816-7902332,7900522-7901471	AT1G22380.1  CDS  gene_syn AtUGT85A3, UDP-glucosyl transferase 85A3  gene AtUGT85A3  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function glucuronosyltransferase activity|GO:0015020|17498920|ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product AtUGT85A3 (UDP-glucosyl transferase 85A3); glucuronosyltransferase/ transcription factor/ transferase, transferring glycosyl groups  note UDP-glucosyl transferase 85A3 (AtUGT85A3); FUNCTIONS IN: transferase activity, transferring glycosyl groups, transcription factor activity, glucuronosyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT85A1; UDP-glycosyltransferase/ cis-zeatin O-beta-D-glucosyltransferase/ glucuronosyltransferase/ trans-zeatin O-beta-D-glucosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT1G22400.1); Has 4834 Blast hits to 4785 proteins in 286 species: Archae - 0; Bacteria - 31; Metazoa - 1905; Fungi - 10; Plants - 2764; Viruses - 95; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G22380.1p  transcript_id AT1G22380.1  protein_id AT1G22380.1p  transcript_id AT1G22380.1  
At1g22400	chr1:007906091	0.0	C/7906091-7906607,7903851-7904803	AT1G22400.1  CDS  gene_syn ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, ATUGT85A1, F12K8.26, F12K8_26, UGT85A1  gene UGT85A1  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function glucuronosyltransferase activity|GO:0015020|17498920|ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  go_function trans-zeatin O-beta-D-glucosyltransferase activity|GO:0050403|15342621|IDA  go_function cis-zeatin O-beta-D-glucosyltransferase activity|GO:0050502|15342621|IDA  product UGT85A1; UDP-glycosyltransferase/ cis-zeatin O-beta-D-glucosyltransferase/ glucuronosyltransferase/ trans-zeatin O-beta-D-glucosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note UGT85A1; FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: AtUGT85A3 (UDP-glucosyl transferase 85A3); glucuronosyltransferase/ transcription factor/ transferase, transferring glycosyl groups (TAIR:AT1G22380.1); Has 5011 Blast hits to 4962 proteins in 308 species: Archae - 0; Bacteria - 100; Metazoa - 2040; Fungi - 16; Plants - 2764; Viruses - 58; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT1G22400.1p  transcript_id AT1G22400.1  protein_id AT1G22400.1p  transcript_id AT1G22400.1  
At1g22403	chr1:007908569	0.0	C/7908569-7909509	AT1G22403.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G22403.1  
At1g22410	chr1:007912120	0.0	W/7912120-7912644,7912723-7913000,7913480-7913756,7913838-7914083,7914485-7914742	AT1G22410.1  CDS  gene_syn F12K8.24, F12K8_24  go_component membrane|GO:0016020|17432890|IDA  go_function 3-deoxy-7-phosphoheptulonate synthase activity|GO:0003849||IEA  go_process aromatic amino acid family biosynthetic process|GO:0009073|1967256|TAS  product 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative  note 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative; FUNCTIONS IN: 3-deoxy-7-phosphoheptulonate synthase activity; INVOLVED IN: aromatic amino acid family biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase, class II (InterPro:IPR002480); BEST Arabidopsis thaliana protein match is: DHS1 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE 1); 3-deoxy-7-phosphoheptulonate synthase (TAIR:AT4G39980.1); Has 3140 Blast hits to 3125 proteins in 395 species: Archae - 0; Bacteria - 662; Metazoa - 0; Fungi - 68; Plants - 129; Viruses - 0; Other Eukaryotes - 2281 (source: NCBI BLink).  protein_id AT1G22410.1p  transcript_id AT1G22410.1  protein_id AT1G22410.1p  transcript_id AT1G22410.1  
At1g22420	chr1:007916076	0.0	C/7916076-7917518	AT1G22420.1  CDS  gene_syn F12K8.23, F12K8_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 5216 Blast hits to 3542 proteins in 362 species: Archae - 14; Bacteria - 378; Metazoa - 2513; Fungi - 666; Plants - 731; Viruses - 191; Other Eukaryotes - 723 (source: NCBI BLink).  protein_id AT1G22420.1p  transcript_id AT1G22420.1  protein_id AT1G22420.1p  transcript_id AT1G22420.1  
At1g22430	chr1:007919235	0.0	W/7919235-7919426,7919509-7919555,7919706-7920034,7920184-7920266,7920423-7920498,7920828-7920892,7921033-7921128,7921225-7921386,7921478-7921594	AT1G22430.1  CDS  gene_syn F12K8.22, F12K8_22  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  product alcohol dehydrogenase, putative  note alcohol dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: alcohol dehydrogenase, putative (TAIR:AT4G22110.2); Has 21551 Blast hits to 21541 proteins in 1947 species: Archae - 376; Bacteria - 11625; Metazoa - 1154; Fungi - 1680; Plants - 3074; Viruses - 3; Other Eukaryotes - 3639 (source: NCBI BLink).  protein_id AT1G22430.1p  transcript_id AT1G22430.1  protein_id AT1G22430.1p  transcript_id AT1G22430.1  
At1g22430	chr1:007919235	0.0	W/7919235-7919426,7919509-7919555,7919706-7920034,7920184-7920266,7920423-7920503,7920833-7920892,7921033-7921128,7921225-7921386,7921478-7921594	AT1G22430.2  CDS  gene_syn F12K8.22, F12K8_22  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  product alcohol dehydrogenase, putative  note alcohol dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: alcohol dehydrogenase, putative (TAIR:AT4G22110.2); Has 21551 Blast hits to 21541 proteins in 1947 species: Archae - 376; Bacteria - 11625; Metazoa - 1154; Fungi - 1680; Plants - 3074; Viruses - 3; Other Eukaryotes - 3639 (source: NCBI BLink).  protein_id AT1G22430.2p  transcript_id AT1G22430.2  protein_id AT1G22430.2p  transcript_id AT1G22430.2  
At1g22440	chr1:007922560	0.0	W/7922560-7922745,7922831-7922877,7922973-7923301,7923449-7923531,7923650-7923725,7924020-7924084,7924188-7924283,7924367-7924528,7924643-7924759	AT1G22440.1  CDS  gene_syn F12K8.21, F12K8_21  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  product alcohol dehydrogenase, putative  note alcohol dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: alcohol dehydrogenase, putative (TAIR:AT1G22430.2); Has 20692 Blast hits to 20680 proteins in 1943 species: Archae - 364; Bacteria - 11280; Metazoa - 1113; Fungi - 1582; Plants - 3028; Viruses - 3; Other Eukaryotes - 3322 (source: NCBI BLink).  protein_id AT1G22440.1p  transcript_id AT1G22440.1  protein_id AT1G22440.1p  transcript_id AT1G22440.1  
At1g22450	chr1:007925447	0.0	W/7925447-7925488,7925951-7926262,7926405-7926487,7926575-7926656,7926862-7926918	AT1G22450.1  CDS  gene_syn ATCOX6B2, COX6B, CYTOCHROME C OXIDASE 6B, CYTOCHROME C OXIDASE 6B2, F12K8.20, F12K8_20, SUBUNIT 6B OF CYTOCHROME C OXIDASE  gene COX6B  function subunit 6b of cytochrome c oxidase  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function cytochrome-c oxidase activity|GO:0004129||IEA  go_component mitochondrion|GO:0005739|11250078|ISS  go_component mitochondrion|GO:0005739||ISS  go_process oxidation reduction|GO:0055114|11250078|ISS  go_function cytochrome-c oxidase activity|GO:0004129||ISS  product COX6B (CYTOCHROME C OXIDASE 6B); cytochrome-c oxidase  note CYTOCHROME C OXIDASE 6B (COX6B); FUNCTIONS IN: cytochrome-c oxidase activity; INVOLVED IN: oxidation reduction, response to salt stress; LOCATED IN: thylakoid, mitochondrion, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase, subunit VIb (InterPro:IPR003213); BEST Arabidopsis thaliana protein match is: cytochrome c oxidase subunit 6b, putative (TAIR:AT5G57815.1); Has 8399 Blast hits to 3768 proteins in 415 species: Archae - 32; Bacteria - 792; Metazoa - 2407; Fungi - 665; Plants - 240; Viruses - 125; Other Eukaryotes - 4138 (source: NCBI BLink).  protein_id AT1G22450.1p  transcript_id AT1G22450.1  protein_id AT1G22450.1p  transcript_id AT1G22450.1  
At1g22460	chr1:007930190	0.0	C/7930190-7930351,7929985-7930089,7929773-7929871,7929436-7929535,7929287-7929354,7929102-7929190,7928688-7928997,7928475-7928608,7928183-7928396,7927926-7928110,7927745-7927840,7927530-7927665	AT1G22460.1  CDS  gene_syn F12K8.19, F12K8_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64600.1); Has 432 Blast hits to 424 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 432; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22460.1p  transcript_id AT1G22460.1  protein_id AT1G22460.1p  transcript_id AT1G22460.1  
At1g22470	chr1:007932908	0.0	C/7932908-7933348	AT1G22470.1  CDS  gene_syn F12K8.18, F12K8_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72240.1); Has 2310 Blast hits to 192 proteins in 42 species: Archae - 0; Bacteria - 8; Metazoa - 969; Fungi - 80; Plants - 43; Viruses - 2; Other Eukaryotes - 1208 (source: NCBI BLink).  protein_id AT1G22470.1p  transcript_id AT1G22470.1  protein_id AT1G22470.1p  transcript_id AT1G22470.1  
At1g22480	chr1:007934910	0.0	C/7934910-7935054,7934232-7934611	AT1G22480.1  CDS  gene_syn F12K8.17, F12K8_17  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function copper ion binding|GO:0005507||ISS  product plastocyanin-like domain-containing protein  note plastocyanin-like domain-containing protein; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to membrane; EXPRESSED IN: shoot apex, embryo, inflorescence meristem, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972), Blue (type 1) copper domain (InterPro:IPR000923); BEST Arabidopsis thaliana protein match is: plastocyanin-like domain-containing protein (TAIR:AT1G72230.1); Has 781 Blast hits to 777 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 770; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G22480.1p  transcript_id AT1G22480.1  protein_id AT1G22480.1p  transcript_id AT1G22480.1  
At1g22490	chr1:007940052	0.0	C/7940052-7940489,7939196-7939585,7938448-7938534	AT1G22490.1  CDS  gene_syn F12K8.16, F12K8_16  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (bHLH096) (TAIR:AT1G72210.1); Has 860 Blast hits to 857 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 23; Plants - 794; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G22490.1p  transcript_id AT1G22490.1  protein_id AT1G22490.1p  transcript_id AT1G22490.1  
At1g22500	chr1:007949581	0.0	W/7949581-7950726	AT1G22500.1  CDS  gene_syn F12K8.15, F12K8_15  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: stem, cotyledon, root, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G72200.1); Has 6507 Blast hits to 6490 proteins in 222 species: Archae - 0; Bacteria - 2; Metazoa - 2224; Fungi - 542; Plants - 2639; Viruses - 59; Other Eukaryotes - 1041 (source: NCBI BLink).  protein_id AT1G22500.1p  transcript_id AT1G22500.1  protein_id AT1G22500.1p  transcript_id AT1G22500.1  
At1g22510	chr1:007952507	0.0	C/7952507-7952597,7951965-7952164,7951413-7951514,7951217-7951268,7951003-7951115	AT1G22510.1  CDS  gene_syn F12K8.14, F12K8_14  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1232 (InterPro:IPR010652), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G72175.1); Has 530 Blast hits to 530 proteins in 91 species: Archae - 0; Bacteria - 15; Metazoa - 391; Fungi - 31; Plants - 40; Viruses - 2; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT1G22510.1p  transcript_id AT1G22510.1  protein_id AT1G22510.1p  transcript_id AT1G22510.1  
At1g22520	chr1:007954175	0.0	C/7954175-7954304,7953794-7953963,7953693-7953721,7953278-7953313,7952996-7953170	AT1G22520.2  CDS  gene_syn F12K8.27, F12K8_27  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF543 (InterPro:IPR007512); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72170.1).  protein_id AT1G22520.2p  transcript_id AT1G22520.2  protein_id AT1G22520.2p  transcript_id AT1G22520.2  
At1g22520	chr1:007954175	0.0	C/7954175-7954304,7953809-7953963,7953299-7953313	AT1G22520.1  CDS  gene_syn F12K8.27, F12K8_27  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF543 (InterPro:IPR007512); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72170.1); Has 71 Blast hits to 71 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 32; Fungi - 2; Plants - 27; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G22520.1p  transcript_id AT1G22520.1  protein_id AT1G22520.1p  transcript_id AT1G22520.1  
At1g22530	chr1:007956785	0.0	C/7956785-7958326,7956581-7956708,7956351-7956486,7955773-7956018	AT1G22530.1  CDS  gene_syn F12K8.13, F12K8_13, PATELLIN 2, PATL2  gene PATL2  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||IEA  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product PATL2 (PATELLIN 2); transporter  note PATELLIN 2 (PATL2); FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), GOLD (InterPro:IPR009038), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: PATL1 (PATELLIN 1); transporter (TAIR:AT1G72150.1); Has 52283 Blast hits to 28572 proteins in 1631 species: Archae - 214; Bacteria - 8910; Metazoa - 20172; Fungi - 6486; Plants - 2360; Viruses - 305; Other Eukaryotes - 13836 (source: NCBI BLink).  protein_id AT1G22530.1p  transcript_id AT1G22530.1  protein_id AT1G22530.1p  transcript_id AT1G22530.1  
At1g22540	chr1:007964202	0.0	W/7964202-7964325,7964442-7964659,7964805-7965337,7965424-7966222	AT1G22540.1  CDS  gene_syn F12K8.12, F12K8_12  go_component membrane|GO:0016020||IEA  go_process oligopeptide transport|GO:0006857||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region, conserved site (InterPro:IPR018456), TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT1G72140.1); Has 4482 Blast hits to 4367 proteins in 786 species: Archae - 0; Bacteria - 2034; Metazoa - 529; Fungi - 315; Plants - 1121; Viruses - 0; Other Eukaryotes - 483 (source: NCBI BLink).  protein_id AT1G22540.1p  transcript_id AT1G22540.1  protein_id AT1G22540.1p  transcript_id AT1G22540.1  
At1g22550	chr1:007968429	0.0	C/7968429-7968552,7968122-7968339,7967494-7968038,7966608-7967415	AT1G22550.1  CDS  gene_syn F12K8.11, F12K8_11  go_component membrane|GO:0016020||IEA  go_process oligopeptide transport|GO:0006857||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region, conserved site (InterPro:IPR018456), TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT1G22570.1); Has 4470 Blast hits to 4427 proteins in 803 species: Archae - 0; Bacteria - 2095; Metazoa - 435; Fungi - 295; Plants - 1111; Viruses - 0; Other Eukaryotes - 534 (source: NCBI BLink).  protein_id AT1G22550.1p  transcript_id AT1G22550.1  protein_id AT1G22550.1p  transcript_id AT1G22550.1  
At1g22560	chr1:007970248	0.0	W/7970248-7974396	AT1G22560.1  mRNA_TE_gene  pseudo  gene_syn F12K8.9  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 9.4e-20 P-value blast match to GB:BAA20419 reverse transcriptase (LINE-element) (Mus musculus)  
At1g22570	chr1:007978450	0.0	C/7978450-7978573,7978151-7978368,7977495-7978054,7976620-7977415	AT1G22570.1  CDS  gene_syn F12K8.8, F12K8_8  go_component membrane|GO:0016020||IEA  go_process oligopeptide transport|GO:0006857||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region, conserved site (InterPro:IPR018456), TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT1G22550.1); Has 4548 Blast hits to 4472 proteins in 799 species: Archae - 0; Bacteria - 2123; Metazoa - 432; Fungi - 311; Plants - 1125; Viruses - 0; Other Eukaryotes - 557 (source: NCBI BLink).  protein_id AT1G22570.1p  transcript_id AT1G22570.1  protein_id AT1G22570.1p  transcript_id AT1G22570.1  
At1g22580	chr1:007980709	0.0	W/7980709-7981263	AT1G22580.1  mRNA_TE_gene  pseudo  gene_syn F12K8.30  note Transposable element gene, pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 32% identity and 1.1e-13 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}  
At1g22590	chr1:007981849	0.0	W/7981849-7981874,7982045-7982113,7983720-7984002	AT1G22590.1  CDS  gene_syn AGAMOUS-LIKE 87, AGL87, F12K8.7, F12K8_7  gene AGL87  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product MADS-box family protein  note AGAMOUS-LIKE 87 (AGL87); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G22590.1p  transcript_id AT1G22590.1  protein_id AT1G22590.1p  transcript_id AT1G22590.1  
At1g22590	chr1:007983511	0.0	W/7983511-7984002	AT1G22590.2  CDS  gene_syn AGAMOUS-LIKE 87, AGL87, F12K8.7, F12K8_7  gene AGL87  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product MADS-box family protein  note AGAMOUS-LIKE 87 (AGL87); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL80 (AGAMOUS-LIKE 80); DNA binding / transcription factor (TAIR:AT5G48670.1); Has 3342 Blast hits to 3341 proteins in 419 species: Archae - 0; Bacteria - 0; Metazoa - 418; Fungi - 178; Plants - 2704; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT1G22590.2p  transcript_id AT1G22590.2  protein_id AT1G22590.2p  transcript_id AT1G22590.2  
At1g22600	chr1:007988303	0.0	C/7988303-7989187,7987308-7987580	AT1G22600.1  CDS  gene_syn F12K8.5, F12K8_5  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, sperm cell, embryo, hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: late embryogenesis abundant domain-containing protein / LEA domain-containing protein (TAIR:AT1G72100.1); Has 126 Blast hits to 123 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 63; Fungi - 8; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22600.1p  transcript_id AT1G22600.1  protein_id AT1G22600.1p  transcript_id AT1G22600.1  
At1g22610	chr1:007994478	0.0	W/7994478-7997567	AT1G22610.1  CDS  gene_syn F12K8.4, F12K8_4  go_component chloroplast|GO:0009507|15028209|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal, plant (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT3G57880.1); Has 7123 Blast hits to 3983 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 5329; Fungi - 252; Plants - 1142; Viruses - 0; Other Eukaryotes - 400 (source: NCBI BLink).  protein_id AT1G22610.1p  transcript_id AT1G22610.1  protein_id AT1G22610.1p  transcript_id AT1G22610.1  
At1g22620	chr1:008002656	0.0	C/8002656-8002787,8002265-8002469,8002010-8002175,8001661-8001883,8001507-8001583,8001096-8001283,8000874-8000971,8000651-8000784,8000444-8000578,7999923-8000307,7999713-7999834,7999309-7999419,7998907-7999119,7998533-7998718,7998234-7998345,7997889-7998140	AT1G22620.1  CDS  gene_syn ATSAC1, F12K8.3, suppressor of actin 1  gene ATSAC1  function SAC domain phosphoinositide (3,5)P2 phosphatase. Colocalized with a Golgi Marker. Required for normal cell morphogenesis, cell wall synthesis, and actin organization.  go_component Golgi apparatus|GO:0005794|15805481|IDA  go_process cytoskeleton organization|GO:0007010|15805481|IMP  go_process unidimensional cell growth|GO:0009826|15805481|IMP  go_process plant-type cell wall biogenesis|GO:0009832|15805481|IMP  go_function phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|GO:0004439|15805481|IDA  go_function phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|GO:0004439||ISS  product ATSAC1 (suppressor of actin 1); phosphatidylinositol-4,5-bisphosphate 5-phosphatase  note suppressor of actin 1 (ATSAC1); FUNCTIONS IN: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity; INVOLVED IN: plant-type cell wall biogenesis, cytoskeleton organization, unidimensional cell growth; LOCATED IN: Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Synaptojanin, N-terminal (InterPro:IPR002013); BEST Arabidopsis thaliana protein match is: phosphoinositide phosphatase family protein (TAIR:AT3G14205.1); Has 1734 Blast hits to 1173 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 764; Fungi - 509; Plants - 169; Viruses - 0; Other Eukaryotes - 292 (source: NCBI BLink).  protein_id AT1G22620.1p  transcript_id AT1G22620.1  protein_id AT1G22620.1p  transcript_id AT1G22620.1  
At1g22630	chr1:008003487	0.0	W/8003487-8003624,8003717-8003776,8003927-8003973,8004080-8004167	AT1G22630.1  CDS  gene_syn F12K8.2  go_component chloroplast|GO:0009507|18431481|IDA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 64 Blast hits to 63 proteins in 26 species: Archae - 0; Bacteria - 11; Metazoa - 26; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G22630.1p  transcript_id AT1G22630.1  protein_id AT1G22630.1p  transcript_id AT1G22630.1  
At1g22640	chr1:008006289	0.0	W/8006289-8006421,8006499-8006628,8006709-8007219	AT1G22640.1  CDS  gene_syn ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, ATMYB3, MYB DOMAIN PROTEIN 3, MYB3, T22J18.19, T22J18_19, TRANSCRIPTION FACTOR MYB3  gene MYB3  function MYB-type transcription factor (MYB3) that represses phenylpropanoid biosynthesis gene expression  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_process response to wounding|GO:0009611|12068110|IEP  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process cinnamic acid biosynthetic process|GO:0009800|12068110|TAS  go_process negative regulation of metabolic process|GO:0009892|12068110|TAS  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB3 (MYB DOMAIN PROTEIN 3); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 3 (MYB3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 12 processes; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: ATMYB6; DNA binding / transcription factor (TAIR:AT4G09460.1); Has 6455 Blast hits to 5987 proteins in 356 species: Archae - 0; Bacteria - 0; Metazoa - 602; Fungi - 316; Plants - 3895; Viruses - 3; Other Eukaryotes - 1639 (source: NCBI BLink).  protein_id AT1G22640.1p  transcript_id AT1G22640.1  protein_id AT1G22640.1p  transcript_id AT1G22640.1  
At1g22650	chr1:008015327	0.0	C/8015327-8015647,8014799-8015230,8014120-8014678,8013529-8013821	AT1G22650.1  CDS  gene_syn T22J18.18, T22J18_18  go_process sucrose catabolic process, using beta-fructofuranosidase|GO:0019575||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_function beta-fructofuranosidase activity|GO:0004564||ISS  product beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative  note beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative; FUNCTIONS IN: catalytic activity, beta-fructofuranosidase activity; INVOLVED IN: sucrose catabolic process, using beta-fructofuranosidase; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Plant neutral invertase (InterPro:IPR006937), Six-hairpin glycosidase-like (InterPro:IPR008928); BEST Arabidopsis thaliana protein match is: beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative (TAIR:AT4G09510.1); Has 529 Blast hits to 528 proteins in 80 species: Archae - 0; Bacteria - 109; Metazoa - 0; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).  protein_id AT1G22650.1p  transcript_id AT1G22650.1  protein_id AT1G22650.1p  transcript_id AT1G22650.1  
At1g22651	chr1:008016126	0.0	W/8016126-8016287	AT1G22651.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G22651.1p  transcript_id AT1G22651.1  protein_id AT1G22651.1p  transcript_id AT1G22651.1  
At1g22660	chr1:008017410	0.0	W/8017410-8017769,8017869-8017999,8018085-8018202,8018358-8018410,8018517-8018566,8018648-8018746,8018873-8018982,8019073-8019200,8019306-8019372,8019484-8019567,8019662-8019724,8019983-8020160,8020367-8020540,8020884-8020981,8021434-8021538	AT1G22660.1  CDS  gene_syn T22J18.17, T22J18_17  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process tRNA processing|GO:0008033||ISS  go_function tRNA adenylyltransferase activity|GO:0004810||ISS  product tRNA-nucleotidyltransferase, putative / tRNA adenylyltransferase, putative  note tRNA-nucleotidyltransferase, putative / tRNA adenylyltransferase, putative; FUNCTIONS IN: tRNA adenylyltransferase activity, RNA binding, nucleotidyltransferase activity; INVOLVED IN: tRNA processing, RNA processing; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotide adenylyltransferase region (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: polynucleotide adenylyltransferase family protein (TAIR:AT2G17580.1); Has 5671 Blast hits to 5668 proteins in 1396 species: Archae - 2; Bacteria - 3283; Metazoa - 115; Fungi - 175; Plants - 54; Viruses - 8; Other Eukaryotes - 2034 (source: NCBI BLink).  protein_id AT1G22660.1p  transcript_id AT1G22660.1  protein_id AT1G22660.1p  transcript_id AT1G22660.1  
At1g22660	chr1:008017410	0.0	W/8017410-8017769,8017869-8017999,8018085-8018202,8018358-8018410,8018517-8018566,8018648-8018746,8018873-8018982,8019073-8019200,8019306-8019372,8019484-8019567,8019662-8019724,8019983-8020160,8020367-8020540,8020884-8020981,8021440-8021538	AT1G22660.2  CDS  gene_syn T22J18.17, T22J18_17  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process tRNA processing|GO:0008033||ISS  go_function tRNA adenylyltransferase activity|GO:0004810||ISS  product tRNA-nucleotidyltransferase, putative / tRNA adenylyltransferase, putative  note tRNA-nucleotidyltransferase, putative / tRNA adenylyltransferase, putative; FUNCTIONS IN: tRNA adenylyltransferase activity, RNA binding, nucleotidyltransferase activity; INVOLVED IN: tRNA processing, RNA processing; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotide adenylyltransferase region (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: polynucleotide adenylyltransferase family protein (TAIR:AT2G17580.1); Has 5671 Blast hits to 5668 proteins in 1396 species: Archae - 2; Bacteria - 3283; Metazoa - 115; Fungi - 175; Plants - 54; Viruses - 8; Other Eukaryotes - 2034 (source: NCBI BLink).  protein_id AT1G22660.2p  transcript_id AT1G22660.2  protein_id AT1G22660.2p  transcript_id AT1G22660.2  
At1g22670	chr1:008023387	0.0	C/8023387-8023516,8022936-8023163,8022447-8022845,8021854-8022365	AT1G22670.1  CDS  gene_syn T22J18.16, T22J18_16  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function peptidase activity|GO:0008233||ISS  go_function zinc ion binding|GO:0008270||ISS  product protease-associated zinc finger (C3HC4-type RING finger) family protein  note protease-associated zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: peptidase activity, protein binding, zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protease-associated zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G71980.1); Has 5768 Blast hits to 5735 proteins in 231 species: Archae - 0; Bacteria - 85; Metazoa - 1969; Fungi - 415; Plants - 2559; Viruses - 4; Other Eukaryotes - 736 (source: NCBI BLink).  protein_id AT1G22670.1p  transcript_id AT1G22670.1  protein_id AT1G22670.1p  transcript_id AT1G22670.1  
At1g22680	chr1:008025503	0.0	C/8025503-8026060	AT1G22680.1  CDS  gene_syn T22J18.15, T22J18_15  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G71970.1); Has 25 Blast hits to 25 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22680.1p  transcript_id AT1G22680.1  protein_id AT1G22680.1p  transcript_id AT1G22680.1  
At1g22690	chr1:008027328	0.0	W/8027328-8027390,8027482-8027535,8027624-8027684,8027780-8027961	AT1G22690.1  CDS  gene_syn T22J18.14, T22J18_14  go_component endomembrane system|GO:0012505||IEA  go_process response to gibberellin stimulus|GO:0009739||ISS  go_function molecular_function|GO:0003674||ND  product gibberellin-responsive protein, putative  note gibberellin-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to gibberellin stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: GASA2 (GAST1 PROTEIN HOMOLOG 2) (TAIR:AT4G09610.1); Has 246 Blast hits to 246 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 246; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22690.1p  transcript_id AT1G22690.1  protein_id AT1G22690.1p  transcript_id AT1G22690.1  
At1g22700	chr1:008029086	0.0	C/8029086-8029289,8028687-8028833,8028323-8028607	AT1G22700.3  CDS  gene_syn T22J18.13, T22J18_13  function Encodes a TPR protein with homology to Ycf37 from Synechocystis that is localized to the thylakoid membrane and is involved in photosystem I biogenesis.  go_component chloroplast|GO:0009507|18431481|IDA  go_function binding|GO:0005488||IEA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process photosystem I assembly|GO:0048564|16679416|IMP  product tetratricopeptide repeat (TPR)-containing protein  note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: photosystem I assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: SPY (SPINDLY); protein N-acetylglucosaminyltransferase/ protein binding / transferase, transferring glycosyl groups (TAIR:AT3G11540.1); Has 4116 Blast hits to 2816 proteins in 403 species: Archae - 63; Bacteria - 1221; Metazoa - 347; Fungi - 98; Plants - 140; Viruses - 0; Other Eukaryotes - 2247 (source: NCBI BLink).  protein_id AT1G22700.3p  transcript_id AT1G22700.3  protein_id AT1G22700.3p  transcript_id AT1G22700.3  
At1g22700	chr1:008029756	0.0	C/8029756-8029878,8029488-8029524,8029086-8029384,8028687-8028833,8028323-8028607	AT1G22700.2  CDS  gene_syn T22J18.13, T22J18_13  function Encodes a TPR protein with homology to Ycf37 from Synechocystis that is localized to the thylakoid membrane and is involved in photosystem I biogenesis.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_function binding|GO:0005488||IEA  go_process photosystem I assembly|GO:0048564|16679416|IMP  product tetratricopeptide repeat (TPR)-containing protein  note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: photosystem I assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: SPY (SPINDLY); protein N-acetylglucosaminyltransferase/ protein binding / transferase, transferring glycosyl groups (TAIR:AT3G11540.1); Has 4131 Blast hits to 2824 proteins in 406 species: Archae - 65; Bacteria - 1230; Metazoa - 347; Fungi - 98; Plants - 140; Viruses - 0; Other Eukaryotes - 2251 (source: NCBI BLink).  protein_id AT1G22700.2p  transcript_id AT1G22700.2  protein_id AT1G22700.2p  transcript_id AT1G22700.2  
At1g22700	chr1:008029756	0.0	C/8029756-8029878,8029488-8029524,8029086-8029399,8028687-8028833,8028323-8028607	AT1G22700.1  CDS  gene_syn T22J18.13, T22J18_13  function Encodes a TPR protein with homology to Ycf37 from Synechocystis that is localized to the thylakoid membrane and is involved in photosystem I biogenesis.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_function binding|GO:0005488||IEA  go_process photosystem I assembly|GO:0048564|16679416|IMP  product tetratricopeptide repeat (TPR)-containing protein  note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: photosystem I assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: SPY (SPINDLY); protein N-acetylglucosaminyltransferase/ protein binding / transferase, transferring glycosyl groups (TAIR:AT3G11540.1); Has 4129 Blast hits to 2824 proteins in 406 species: Archae - 65; Bacteria - 1230; Metazoa - 347; Fungi - 98; Plants - 140; Viruses - 0; Other Eukaryotes - 2249 (source: NCBI BLink).  protein_id AT1G22700.1p  transcript_id AT1G22700.1  protein_id AT1G22700.1p  transcript_id AT1G22700.1  
At1g22710	chr1:008031714	0.0	C/8031714-8032970,8031505-8031568,8031174-8031217,8030911-8031084	AT1G22710.1  CDS  gene_syn ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, ATSUC2, SUC2, SUCROSE TRANSPORTER 1, SUCROSE-H+ SYMPORTER, SUCROSE-PROTON SYMPORTER 2, SUT1, T22J18.12, T22J18_12  gene SUC2  function Encodes for a high-affinity transporter essential for phloem loading and long-distance transport. A major sucrose transporter, AtSUC2 can also transport a wide range of physiological and synthetic glucose conjugates with both & 945;- or & 946;-linkage.  go_component plasma membrane|GO:0005886|11087840|TAS  go_component plasma membrane|GO:0005886|12954621|IDA  go_component membrane|GO:0016020||ISS  go_process phloem loading|GO:0009915||NAS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function sucrose:hydrogen symporter activity|GO:0008506|16091371|TAS  go_function sucrose:hydrogen symporter activity|GO:0008506||ISS  go_function sucrose transmembrane transporter activity|GO:0008515|12954621|IGI  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product SUC2 (SUCROSE-PROTON SYMPORTER 2); carbohydrate transmembrane transporter/ sucrose transmembrane transporter/ sucrose:hydrogen symporter/ sugar:hydrogen symporter  note SUCROSE-PROTON SYMPORTER 2 (SUC2); FUNCTIONS IN: sucrose transmembrane transporter activity, carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, sucrose:hydrogen symporter activity; INVOLVED IN: phloem loading; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sucrose/H+ symporter, plant (InterPro:IPR005989), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: SUC1 (Sucrose-proton symporter 1); carbohydrate transmembrane transporter/ sucrose:hydrogen symporter/ sugar:hydrogen symporter (TAIR:AT1G71880.1); Has 1581 Blast hits to 1475 proteins in 326 species: Archae - 22; Bacteria - 459; Metazoa - 390; Fungi - 133; Plants - 254; Viruses - 0; Other Eukaryotes - 323 (source: NCBI BLink).  protein_id AT1G22710.1p  transcript_id AT1G22710.1  protein_id AT1G22710.1p  transcript_id AT1G22710.1  
At1g22720	chr1:008045605	0.0	C/8045605-8045665,8045392-8045527,8044232-8044694	AT1G22720.1  CDS  gene_syn T22J18.11, T22J18_11  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function kinase activity|GO:0016301||ISS  product wall-associated kinase, putative  note wall-associated kinase, putative; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, calcium ion binding, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, F mature embryo stage, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-like calcium-binding (InterPro:IPR001881), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: WAK2; ATP binding / calcium ion binding / protein kinase/ protein serine/threonine kinase (TAIR:AT1G21270.1); Has 10151 Blast hits to 10021 proteins in 295 species: Archae - 0; Bacteria - 9; Metazoa - 1228; Fungi - 25; Plants - 8686; Viruses - 20; Other Eukaryotes - 183 (source: NCBI BLink).  protein_id AT1G22720.1p  transcript_id AT1G22720.1  protein_id AT1G22720.1p  transcript_id AT1G22720.1  
At1g22730	chr1:008046511	0.0	W/8046511-8046655,8046741-8046814,8046907-8048769	AT1G22730.1  CDS  gene_syn T22J18.10, T22J18_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MA3 domain-containing protein  note MA3 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891); BEST Arabidopsis thaliana protein match is: MA3 domain-containing protein (TAIR:AT5G63190.2); Has 1475 Blast hits to 573 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 1070; Fungi - 4; Plants - 294; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT1G22730.1p  transcript_id AT1G22730.1  protein_id AT1G22730.1p  transcript_id AT1G22730.1  
At1g22740	chr1:008049247	0.0	W/8049247-8049299,8049393-8049419,8049540-8049639,8049738-8049884,8049981-8050061,8050145-8050290,8050437-8050494	AT1G22740.1  CDS  gene_syn ATRABG3B, RAB7, RAB75, RABG3B, T22J18.9, T22J18_9  gene RABG3B  function GTP-binding protein Rab7  go_component vacuole|GO:0005773|15539469|IDA  go_process intracellular protein transport|GO:0006886||IEA  go_process nucleocytoplasmic transport|GO:0006913||IEA  go_process signal transduction|GO:0007165||IEA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525|9369203|ISS  go_function GTP binding|GO:0005525||ISS  product RABG3B; GTP binding  note RABG3B; FUNCTIONS IN: GTP binding; INVOLVED IN: intracellular protein transport, signal transduction, nucleocytoplasmic transport, protein transport, small GTPase mediated signal transduction; LOCATED IN: vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Ras small GTPase, Rho type (InterPro:IPR003578), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: Ras-related GTP-binding protein, putative (TAIR:AT4G09720.1); Has 20640 Blast hits to 20615 proteins in 592 species: Archae - 15; Bacteria - 91; Metazoa - 11549; Fungi - 2386; Plants - 1767; Viruses - 19; Other Eukaryotes - 4813 (source: NCBI BLink).  protein_id AT1G22740.1p  transcript_id AT1G22740.1  protein_id AT1G22740.1p  transcript_id AT1G22740.1  
At1g22750	chr1:008050911	0.0	W/8050911-8051044,8051148-8051199,8051288-8051361,8051455-8051556,8051830-8051973,8052062-8052113,8052233-8052306,8052391-8052480,8052606-8052618	AT1G22750.1  CDS  gene_syn T22J18.8, T22J18_8  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1475 (InterPro:IPR009943); Has 148 Blast hits to 129 proteins in 10 species: Archae - 0; Bacteria - 3; Metazoa - 1; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT1G22750.1p  transcript_id AT1G22750.1  protein_id AT1G22750.1p  transcript_id AT1G22750.1  
At1g22750	chr1:008050911	0.0	W/8050911-8051044,8051148-8051199,8051288-8051361,8051455-8051556,8051830-8051973,8052062-8052113,8052233-8052306,8052391-8052480,8052610-8052631	AT1G22750.2  CDS  gene_syn T22J18.8, T22J18_8  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1475 (InterPro:IPR009943); Has 148 Blast hits to 129 proteins in 10 species: Archae - 0; Bacteria - 3; Metazoa - 1; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT1G22750.2p  transcript_id AT1G22750.2  protein_id AT1G22750.2p  transcript_id AT1G22750.2  
At1g22750	chr1:008050911	0.0	W/8050911-8051044,8051148-8051199,8051288-8051361,8051455-8051556,8051830-8051973,8052062-8052113,8052233-8052306,8052391-8052480,8052615-8052618	AT1G22750.3  CDS  gene_syn T22J18.8, T22J18_8  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1475 (InterPro:IPR009943); Has 148 Blast hits to 129 proteins in 10 species: Archae - 0; Bacteria - 3; Metazoa - 1; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT1G22750.3p  transcript_id AT1G22750.3  protein_id AT1G22750.3p  transcript_id AT1G22750.3  
At1g22750	chr1:008050911	0.0	W/8050911-8051044,8051148-8051199,8051288-8051361,8051455-8051556,8051830-8051973,8052062-8052113,8052233-8052306,8052391-8052480,8052663-8052714	AT1G22750.4  CDS  gene_syn T22J18.8, T22J18_8  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1475 (InterPro:IPR009943); Has 148 Blast hits to 129 proteins in 10 species: Archae - 0; Bacteria - 3; Metazoa - 1; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT1G22750.4p  transcript_id AT1G22750.4  protein_id AT1G22750.4p  transcript_id AT1G22750.4  
At1g22760	chr1:008055599	0.0	W/8055599-8055902,8056417-8057198,8057291-8057368,8057455-8057544,8057636-8057932,8058004-8058219,8058584-8058799	AT1G22760.1  CDS  gene_syn PAB3, POLY(A) BINDING PROTEIN 3, T22J18.7, T22J18_7  gene PAB3  function Putative poly(A) binding protein May there fore function in posttranscriptional regulation, including mRNA turnover and translational initiation. Expression detected only in floral organs.  go_process mRNA processing|GO:0006397|11516954|IGI  go_function RNA binding|GO:0003723||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product PAB3 (POLY(A) BINDING PROTEIN 3); RNA binding / translation initiation factor  note POLY(A) BINDING PROTEIN 3 (PAB3); FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: mRNA processing; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Polyadenylate-binding protein/Hyperplastic disc protein (InterPro:IPR002004), RNA recognition motif, RNP-1 (InterPro:IPR000504), Polyadenylate binding protein, human types 1, 2, 3, 4 (InterPro:IPR006515), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: PAB5 (POLY(A)-BINDING PROTEIN 5); RNA binding / poly(A) binding / translation initiation factor (TAIR:AT1G71770.1); Has 40192 Blast hits to 17957 proteins in 650 species: Archae - 22; Bacteria - 1877; Metazoa - 23025; Fungi - 4635; Plants - 5674; Viruses - 0; Other Eukaryotes - 4959 (source: NCBI BLink).  protein_id AT1G22760.1p  transcript_id AT1G22760.1  protein_id AT1G22760.1p  transcript_id AT1G22760.1  
At1g22767	chr1:008061042	0.0	C/8061042-8061176	AT1G22767.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G22767.1p  transcript_id AT1G22767.1  protein_id AT1G22767.1p  transcript_id AT1G22767.1  
At1g22770	chr1:008062398	0.0	W/8062398-8062562,8062643-8062697,8062776-8062918,8063003-8063274,8063421-8063476,8063646-8063883,8064010-8064160,8064287-8064496,8064597-8066129,8066242-8066310,8066612-8066830,8066923-8067015,8067130-8067447	AT1G22770.1  CDS  gene_syn FB, GI, GIGANTEA, T22J18.6, T22J18_6  gene GI  function Together with CONSTANTS (CO) and FLOWERING LOCUS T (FT), GIGANTEA promotes flowering under long days in a circadian clock-controlled flowering pathway. GI acts earlier than CO and FT in the pathway by increasing CO and FT mRNA abundance. Located in the nucleus. Regulates several developmental processes, including photoperiod-mediated flowering, phytochrome B signaling, circadian clock, carbohydrate metabolism, and cold stress response. The gene s transcription is controlled by the circadian clock and it is post-transcriptionally regulated by light and dark. Forms a complex with FKF1 on the CO promoter to regulate CO expression.  go_component nucleus|GO:0005634|16006578|IDA  go_component nucleoplasm|GO:0005654|10920210|IDA  go_process circadian rhythm|GO:0007623|17872410|IDA  go_process response to cold|GO:0009409|16231185|IMP  go_process response to blue light|GO:0009637|17872410|IDA  go_process flower development|GO:0009908|10202817|TAS  go_process response to far red light|GO:0010218|18790998|IMP  go_process temperature compensation of the circadian clock|GO:0010378|16617099|IMP  go_process response to hydrogen peroxide|GO:0042542|9681039|IMP  go_process regulation of circadian rhythm|GO:0042752|16006578|IMP  go_process regulation of transcription|GO:0045449|17872410|IDA  go_process positive regulation of long-day photoperiodism, flowering|GO:0048578|16006578|IMP  product GI (GIGANTEA)  note GIGANTEA (GI); INVOLVED IN: in 10 processes; LOCATED IN: nucleoplasm, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 189 Blast hits to 188 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 189; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22770.1p  transcript_id AT1G22770.1  protein_id AT1G22770.1p  transcript_id AT1G22770.1  
At1g22780	chr1:008067990	0.0	W/8067990-8067992,8068177-8068337,8068603-8068791,8069058-8069163	AT1G22780.1  CDS  gene_syn 40S RIBOSOMAL PROTEIN S18, PFL, PFL1, POINTED FIRST LEAVES, POINTED FIRST LEAVES 1, RPS18A, T22J18.5, T22J18_5  gene PFL  function S18 ribosomal protein involved in the binding of f-Met tRNA during initiation of mRNA translation. Expression restricted to meristems. Mutant phenotype-pointed first leaves,reduced fresh weight, growth retardation.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840|7913892|ISS  go_component small ribosomal subunit|GO:0015935||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_process translational initiation|GO:0006413|7913892|TAS  go_function structural constituent of ribosome|GO:0003735||ISS  product PFL (POINTED FIRST LEAVES); RNA binding / nucleic acid binding / structural constituent of ribosome  note POINTED FIRST LEAVES (PFL); FUNCTIONS IN: structural constituent of ribosome, RNA binding, nucleic acid binding; INVOLVED IN: translational initiation, translation; LOCATED IN: cytosolic small ribosomal subunit, small ribosomal subunit, ribosome, cell wall, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13-like, H2TH (InterPro:IPR010979), Ribosomal protein S13, conserved site (InterPro:IPR018269), Ribosomal protein S13 (InterPro:IPR001892); BEST Arabidopsis thaliana protein match is: RPS18C (S18 RIBOSOMAL PROTEIN); RNA binding / nucleic acid binding / structural constituent of ribosome (TAIR:AT4G09800.1); Has 5326 Blast hits to 5326 proteins in 1715 species: Archae - 163; Bacteria - 2773; Metazoa - 291; Fungi - 107; Plants - 309; Viruses - 0; Other Eukaryotes - 1683 (source: NCBI BLink).  protein_id AT1G22780.1p  transcript_id AT1G22780.1  protein_id AT1G22780.1p  transcript_id AT1G22780.1  
At1g22790	chr1:008070271	0.0	W/8070271-8070851,8071223-8071292	AT1G22790.1  CDS  gene_syn T22J18.4, T22J18_4  go_component plasma membrane|GO:0005886|14506206|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34010.1); Has 35 Blast hits to 35 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22790.1p  transcript_id AT1G22790.1  protein_id AT1G22790.1p  transcript_id AT1G22790.1  
At1g22790	chr1:008070271	0.0	W/8070271-8070851,8071223-8071292	AT1G22790.2  CDS  gene_syn T22J18.4, T22J18_4  go_component plasma membrane|GO:0005886|14506206|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34010.1); Has 35 Blast hits to 35 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22790.2p  transcript_id AT1G22790.2  protein_id AT1G22790.2p  transcript_id AT1G22790.2  
At1g22800	chr1:008072020	0.0	W/8072020-8072211,8072307-8072390,8072505-8072583,8072663-8072804,8072916-8072985,8073085-8073149,8073249-8073327,8073408-8073495,8073596-8073750,8073926-8074039	AT1G22800.1  CDS  gene_syn T22J18.3, T22J18_3  go_process metabolic process|GO:0008152||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  product methyltransferase  note methyltransferase; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); Has 1532 Blast hits to 1532 proteins in 584 species: Archae - 2; Bacteria - 950; Metazoa - 102; Fungi - 68; Plants - 20; Viruses - 0; Other Eukaryotes - 390 (source: NCBI BLink).  protein_id AT1G22800.1p  transcript_id AT1G22800.1  protein_id AT1G22800.1p  transcript_id AT1G22800.1  
At1g22810	chr1:008074535	0.0	C/8074535-8074969	AT1G22810.1  CDS  gene_syn T22J18.2, T22J18_2  function encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT1G71520.1); Has 3245 Blast hits to 3241 proteins in 175 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3241; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G22810.1p  transcript_id AT1G22810.1  protein_id AT1G22810.1p  transcript_id AT1G22810.1  
At1g22830	chr1:008076921	0.0	W/8076921-8079032	AT1G22830.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G71490.1); Has 14501 Blast hits to 4721 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 51; Fungi - 33; Plants - 14173; Viruses - 0; Other Eukaryotes - 244 (source: NCBI BLink).  protein_id AT1G22830.1p  transcript_id AT1G22830.1  protein_id AT1G22830.1p  transcript_id AT1G22830.1  
At1g22830	chr1:008076921	0.0	W/8076921-8079032	AT1G22830.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G71490.1); Has 14501 Blast hits to 4721 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 51; Fungi - 33; Plants - 14173; Viruses - 0; Other Eukaryotes - 244 (source: NCBI BLink).  protein_id AT1G22830.2p  transcript_id AT1G22830.2  protein_id AT1G22830.2p  transcript_id AT1G22830.2  
At1g22840	chr1:008079384	0.0	W/8079384-8079495,8079975-8080108,8080188-8080286	AT1G22840.1  CDS  gene_syn APOCYTOCHROME C-A, ATCYTC-A, CYTC-1, CYTOCHROME C-1, CYTOCHROME C-A, F19G10.20, F19G10_20  gene CYTC-1  function Encodes cytochrome c. Contains two site II (TGGGCC/T) elements, which interact with a TCP-domain transcription factor, and a downstream internal telomeric repeat, and are required for expression of the Cytc-1 gene. Promoter directs preferential expression in root and shoot meristems and in anthers.  go_component plasma membrane|GO:0005886|17151019|IDA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process cell proliferation|GO:0008283|16113211|TAS  go_function electron carrier activity|GO:0009055||ISS  product CYTC-1 (CYTOCHROME C-1); electron carrier/ heme binding / iron ion binding  note CYTOCHROME C-1 (CYTC-1); FUNCTIONS IN: electron carrier activity, iron ion binding, heme binding; INVOLVED IN: cell proliferation; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c, class IA/ IB (InterPro:IPR002327), Cytochrome c, class I (InterPro:IPR003088), Cytochrome c, monohaem (InterPro:IPR009056); BEST Arabidopsis thaliana protein match is: CYTC-2 (cytochrome c-2); electron carrier/ heme binding / iron ion binding (TAIR:AT4G10040.1); Has 3350 Blast hits to 3328 proteins in 553 species: Archae - 0; Bacteria - 1029; Metazoa - 541; Fungi - 195; Plants - 114; Viruses - 0; Other Eukaryotes - 1471 (source: NCBI BLink).  protein_id AT1G22840.1p  transcript_id AT1G22840.1  protein_id AT1G22840.1p  transcript_id AT1G22840.1  
At1g22840	chr1:008079384	0.0	W/8079384-8079495,8079975-8080112,8080188-8080246	AT1G22840.2  CDS  gene_syn APOCYTOCHROME C-A, ATCYTC-A, CYTC-1, CYTOCHROME C-1, CYTOCHROME C-A, F19G10.20, F19G10_20  gene CYTC-1  function Encodes cytochrome c. Contains two site II (TGGGCC/T) elements, which interact with a TCP-domain transcription factor, and a downstream internal telomeric repeat, and are required for expression of the Cytc-1 gene. Promoter directs preferential expression in root and shoot meristems and in anthers.  go_component plasma membrane|GO:0005886|17151019|IDA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process cell proliferation|GO:0008283|16113211|TAS  go_function electron carrier activity|GO:0009055||ISS  product CYTC-1 (CYTOCHROME C-1); electron carrier/ heme binding / iron ion binding  note CYTOCHROME C-1 (CYTC-1); FUNCTIONS IN: electron carrier activity, iron ion binding, heme binding; INVOLVED IN: cell proliferation; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c, class IA/ IB (InterPro:IPR002327), Cytochrome c, class I (InterPro:IPR003088), Cytochrome c, monohaem (InterPro:IPR009056); BEST Arabidopsis thaliana protein match is: CYTC-2 (cytochrome c-2); electron carrier/ heme binding / iron ion binding (TAIR:AT4G10040.1); Has 3076 Blast hits to 3060 proteins in 537 species: Archae - 0; Bacteria - 964; Metazoa - 536; Fungi - 192; Plants - 110; Viruses - 0; Other Eukaryotes - 1274 (source: NCBI BLink).  protein_id AT1G22840.2p  transcript_id AT1G22840.2  protein_id AT1G22840.2p  transcript_id AT1G22840.2  
At1g22850	chr1:008082378	0.0	C/8082378-8082816,8082204-8082256,8082014-8082106,8081700-8081923,8081395-8081461,8080915-8081025,8080671-8080718	AT1G22850.1  CDS  gene_syn F19G10.23  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03260.1); Has 3098 Blast hits to 3098 proteins in 664 species: Archae - 6; Bacteria - 1614; Metazoa - 182; Fungi - 59; Plants - 145; Viruses - 0; Other Eukaryotes - 1092 (source: NCBI BLink).  protein_id AT1G22850.1p  transcript_id AT1G22850.1  protein_id AT1G22850.1p  transcript_id AT1G22850.1  
At1g22860	chr1:008083400	0.0	W/8083400-8084461,8084562-8084837,8085034-8085230,8085345-8085486,8086015-8086290,8086394-8086466,8086913-8086961,8087108-8087396,8087584-8087639,8087939-8088050,8088129-8088257,8088475-8088645,8088775-8088867	AT1G22860.1  CDS  gene_syn F19G10.18, F19G10_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 284 Blast hits to 266 proteins in 98 species: Archae - 0; Bacteria - 2; Metazoa - 148; Fungi - 62; Plants - 34; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT1G22860.1p  transcript_id AT1G22860.1  protein_id AT1G22860.1p  transcript_id AT1G22860.1  
At1g22870	chr1:008089501	0.0	W/8089501-8089992,8090062-8090166,8090246-8090353,8090460-8090642,8090767-8090893,8090994-8091055,8091152-8091238,8091349-8091435,8091741-8091854,8092288-8092416,8092611-8092673,8092780-8092941,8093039-8093157,8093270-8094173	AT1G22870.1  CDS  gene_syn F19G10.17, F19G10_17  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function binding|GO:0005488||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Armadillo-like helical (InterPro:IPR011989), Serine/threonine protein kinase (InterPro:IPR002290), Armadillo-type fold (InterPro:IPR016024), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G71410.1); Has 19974 Blast hits to 18490 proteins in 797 species: Archae - 6; Bacteria - 1664; Metazoa - 7645; Fungi - 2706; Plants - 2294; Viruses - 20; Other Eukaryotes - 5639 (source: NCBI BLink).  protein_id AT1G22870.1p  transcript_id AT1G22870.1  protein_id AT1G22870.1p  transcript_id AT1G22870.1  
At1g22880	chr1:008095770	0.0	W/8095770-8095964,8096046-8096549,8096637-8096786,8096865-8096976,8097046-8097539	AT1G22880.1  CDS  gene_syn ARABIDOPSIS THALIANA CELLULASE 5, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, ATCEL5, ATGH9B4, CEL5, CELLULASE 5, F19G10.16, F19G10_16  gene CEL5  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product CEL5 (CELLULASE 5); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds  note CELLULASE 5 (CEL5); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: ATCEL3 (ARABIDOPSIS THALIANA CELLULASE 3); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G71380.1); Has 1107 Blast hits to 1103 proteins in 187 species: Archae - 0; Bacteria - 309; Metazoa - 137; Fungi - 14; Plants - 621; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G22880.1p  transcript_id AT1G22880.1  protein_id AT1G22880.1p  transcript_id AT1G22880.1  
At1g22880	chr1:008096103	0.0	W/8096103-8096549,8096637-8096786,8096865-8096976,8097046-8097539	AT1G22880.2  CDS  gene_syn ARABIDOPSIS THALIANA CELLULASE 5, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, ATCEL5, ATGH9B4, CEL5, CELLULASE 5, F19G10.16, F19G10_16  gene CEL5  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product CEL5 (CELLULASE 5); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds  note CELLULASE 5 (CEL5); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: ATCEL3 (ARABIDOPSIS THALIANA CELLULASE 3); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G71380.1); Has 1020 Blast hits to 1016 proteins in 163 species: Archae - 0; Bacteria - 255; Metazoa - 117; Fungi - 14; Plants - 610; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT1G22880.2p  transcript_id AT1G22880.2  protein_id AT1G22880.2p  transcript_id AT1G22880.2  
At1g22882	chr1:008099150	0.0	W/8099150-8099303,8099392-8101220	AT1G22882.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Sad1/UNC-like, C-terminal (InterPro:IPR012919), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G71360.1); Has 1862 Blast hits to 1619 proteins in 245 species: Archae - 32; Bacteria - 119; Metazoa - 736; Fungi - 195; Plants - 90; Viruses - 21; Other Eukaryotes - 669 (source: NCBI BLink).  protein_id AT1G22882.1p  transcript_id AT1G22882.1  protein_id AT1G22882.1p  transcript_id AT1G22882.1  
At1g22885	chr1:008101608	0.0	W/8101608-8101713,8102030-8102133	AT1G22885.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22885.2p  transcript_id AT1G22885.2  protein_id AT1G22885.2p  transcript_id AT1G22885.2  
At1g22885	chr1:008101608	0.0	W/8101608-8101713,8102033-8102133	AT1G22885.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22885.1p  transcript_id AT1G22885.1  protein_id AT1G22885.1p  transcript_id AT1G22885.1  
At1g22890	chr1:008102851	0.0	W/8102851-8102956,8103113-8103228	AT1G22890.1  CDS  gene_syn F19G10.22, F19G10_22  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; Has 10 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22890.1p  transcript_id AT1G22890.1  protein_id AT1G22890.1p  transcript_id AT1G22890.1  
At1g22900	chr1:008103910	0.0	C/8103910-8104491	AT1G22900.1  CDS  gene_syn F19G10.14, F19G10_14  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: disease resistance-responsive family protein (TAIR:AT5G42500.1); Has 560 Blast hits to 559 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 560; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22900.1p  transcript_id AT1G22900.1  protein_id AT1G22900.1p  transcript_id AT1G22900.1  
At1g22910	chr1:008105808	0.0	W/8105808-8105981,8106106-8106238,8106534-8106660,8107108-8107147,8107291-8107519,8107593-8107618	AT1G22910.2  CDS  gene_syn F19G10.13, F19G10_13  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT1G33470.1); Has 10356 Blast hits to 8427 proteins in 478 species: Archae - 2; Bacteria - 546; Metazoa - 6040; Fungi - 981; Plants - 1916; Viruses - 0; Other Eukaryotes - 871 (source: NCBI BLink).  protein_id AT1G22910.2p  transcript_id AT1G22910.2  protein_id AT1G22910.2p  transcript_id AT1G22910.2  
At1g22910	chr1:008105808	0.0	W/8105808-8105981,8106106-8106238,8106534-8106660,8107108-8107147,8107291-8107519,8107613-8107659	AT1G22910.1  CDS  gene_syn F19G10.13, F19G10_13  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT1G33470.2); Has 10388 Blast hits to 8455 proteins in 482 species: Archae - 2; Bacteria - 546; Metazoa - 6063; Fungi - 990; Plants - 1916; Viruses - 0; Other Eukaryotes - 871 (source: NCBI BLink).  protein_id AT1G22910.1p  transcript_id AT1G22910.1  protein_id AT1G22910.1p  transcript_id AT1G22910.1  
At1g22910	chr1:008105808	0.0	W/8105808-8105981,8106106-8106238,8106534-8106660,8107108-8107147,8107291-8107523,8107613-8107949	AT1G22910.3  CDS  gene_syn F19G10.13, F19G10_13  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT1G33470.2); Has 10384 Blast hits to 8450 proteins in 478 species: Archae - 2; Bacteria - 546; Metazoa - 6061; Fungi - 987; Plants - 1916; Viruses - 0; Other Eukaryotes - 872 (source: NCBI BLink).  protein_id AT1G22910.3p  transcript_id AT1G22910.3  protein_id AT1G22910.3p  transcript_id AT1G22910.3  
At1g22920	chr1:008111506	0.0	C/8111506-8111895,8111097-8111378,8110863-8111010,8110674-8110759,8109998-8110147	AT1G22920.2  CDS  gene_syn AJH1, ARABIDOPSIS JAB1 HOMOLOG 1, COP9 SIGNALOSOME 5A, CSN5, CSN5A, F19G10.12, F19G10_12, JAB1, PUTATIVE JUN KINASE ACTIVATOR  gene CSN5A  function AJH1 encodes a protein similar to JAB1, a specific mammalian coactivator of AP-1 transcription. Encodes a subunit of the COP9 complex that is involved in protein deneddylation. Plants with mutations in CSN5A and CSN5B have a de-etiolated phenotype.  go_component signalosome|GO:0008180|11019806|TAS  go_component signalosome|GO:0008180|9707402|IPI  go_process G2 phase of mitotic cell cycle|GO:0000085|18434413|IMP  go_process protein deneddylation|GO:0000338|12724534|TAS  go_process photomorphogenesis|GO:0009640|11019806|TAS  go_process response to auxin stimulus|GO:0009733|15923347|IGI  go_process specification of floral organ identity|GO:0010093|12724534|IMP  go_process negative regulation of photomorphogenesis|GO:0010100|15923347|IGI  go_process signalosome assembly|GO:0010387|17307927|IMP  go_process cullin deneddylation|GO:0010388|17307927|IMP  go_function molecular_function|GO:0003674||ND  product CSN5A (COP9 SIGNALOSOME 5A)  note COP9 SIGNALOSOME 5A (CSN5A); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 8 processes; LOCATED IN: signalosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: CSN5B (COP9-SIGNALOSOME 5B); protein binding (TAIR:AT1G71230.1); Has 947 Blast hits to 947 proteins in 180 species: Archae - 0; Bacteria - 2; Metazoa - 396; Fungi - 268; Plants - 151; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink).  protein_id AT1G22920.2p  transcript_id AT1G22920.2  protein_id AT1G22920.2p  transcript_id AT1G22920.2  
At1g22920	chr1:008111506	0.0	C/8111506-8111895,8111097-8111378,8110863-8111010,8110674-8110759,8110070-8110147,8109882-8109971	AT1G22920.1  CDS  gene_syn AJH1, ARABIDOPSIS JAB1 HOMOLOG 1, COP9 SIGNALOSOME 5A, CSN5, CSN5A, F19G10.12, F19G10_12, JAB1, PUTATIVE JUN KINASE ACTIVATOR  gene CSN5A  function AJH1 encodes a protein similar to JAB1, a specific mammalian coactivator of AP-1 transcription. Encodes a subunit of the COP9 complex that is involved in protein deneddylation. Plants with mutations in CSN5A and CSN5B have a de-etiolated phenotype.  go_component signalosome|GO:0008180|11019806|TAS  go_component signalosome|GO:0008180|9707402|IPI  go_process G2 phase of mitotic cell cycle|GO:0000085|18434413|IMP  go_process protein deneddylation|GO:0000338|12724534|TAS  go_process photomorphogenesis|GO:0009640|11019806|TAS  go_process response to auxin stimulus|GO:0009733|15923347|IGI  go_process specification of floral organ identity|GO:0010093|12724534|IMP  go_process negative regulation of photomorphogenesis|GO:0010100|15923347|IGI  go_process signalosome assembly|GO:0010387|17307927|IMP  go_process cullin deneddylation|GO:0010388|17307927|IMP  go_function molecular_function|GO:0003674||ND  product CSN5A (COP9 SIGNALOSOME 5A)  note COP9 SIGNALOSOME 5A (CSN5A); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 8 processes; LOCATED IN: signalosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: CSN5B (COP9-SIGNALOSOME 5B); protein binding (TAIR:AT1G71230.1); Has 947 Blast hits to 947 proteins in 180 species: Archae - 0; Bacteria - 2; Metazoa - 396; Fungi - 268; Plants - 151; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink).  protein_id AT1G22920.1p  transcript_id AT1G22920.1  protein_id AT1G22920.1p  transcript_id AT1G22920.1  
At1g22930	chr1:008117521	0.0	W/8117521-8117709,8117829-8117947,8118024-8118468,8118554-8118669,8118752-8119505,8119584-8120012,8120111-8120299,8120389-8120616,8120750-8121068,8121163-8121343,8121428-8121854	AT1G22930.1  CDS  gene_syn F19G10.11, F19G10_11  go_process biological_process|GO:0008150||ND  product T-complex protein 11  note T-complex protein 11; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: T-complex 11 (InterPro:IPR008862); BEST Arabidopsis thaliana protein match is: T-complex protein 11 (TAIR:AT4G09150.1); Has 8706 Blast hits to 5954 proteins in 561 species: Archae - 13; Bacteria - 948; Metazoa - 3901; Fungi - 587; Plants - 246; Viruses - 12; Other Eukaryotes - 2999 (source: NCBI BLink).  protein_id AT1G22930.1p  transcript_id AT1G22930.1  protein_id AT1G22930.1p  transcript_id AT1G22930.1  
At1g22930	chr1:008118049	0.0	W/8118049-8118468,8118554-8118669,8118752-8119505,8119584-8120012,8120111-8120299,8120389-8120616,8120750-8121068,8121163-8121343,8121428-8121854	AT1G22930.2  CDS  gene_syn F19G10.11, F19G10_11  go_process biological_process|GO:0008150||ND  product T-complex protein 11  note T-complex protein 11; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: T-complex 11 (InterPro:IPR008862); BEST Arabidopsis thaliana protein match is: T-complex protein 11 (TAIR:AT4G09150.1); Has 2589 Blast hits to 1871 proteins in 263 species: Archae - 5; Bacteria - 240; Metazoa - 893; Fungi - 232; Plants - 99; Viruses - 4; Other Eukaryotes - 1116 (source: NCBI BLink).  protein_id AT1G22930.2p  transcript_id AT1G22930.2  protein_id AT1G22930.2p  transcript_id AT1G22930.2  
At1g22940	chr1:008122384	0.0	W/8122384-8122689,8122766-8122841,8122924-8122999,8123091-8123225,8123445-8123509,8123617-8123744,8124035-8124288,8124380-8124908	AT1G22940.1  CDS  gene_syn F19G10.10, F19G10_10, TH-1, TH1, THIAMINE REQUIRING 1, THIAMINEE, THIE  gene TH1  function Encodes a bifunctional enzyme required for thiamine (vitamin B1) biosynthesis. TH1 can phosphorylate HMP-P to produce HMP-PP, the pyrimidine heterocyclic subunit of thiamine. TH1 also catalyzes the condensation of HMP-PP and HET to form thiamine monophosphate (TMP). TH1 also appears capable of phosphorylating HMP based on E.coli mutant complementation assays. th1 mutants are thiamine auxotrophs that die as seedlings on unsupplemented media.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|17174261|IDA  go_process thiamin biosynthetic process|GO:0009228|17174261|IMP  go_function thiamin-phosphate diphosphorylase activity|GO:0004789|16666289|IDA  go_function thiamin-phosphate diphosphorylase activity|GO:0004789|17174261|IGI  go_function hydroxymethylpyrimidine kinase activity|GO:0008902|17174261|IGI  go_function phosphomethylpyrimidine kinase activity|GO:0008972|17174261|IGI  product TH1 (THIAMINE REQUIRING 1); hydroxymethylpyrimidine kinase/ phosphomethylpyrimidine kinase/ thiamin-phosphate diphosphorylase  note THIAMINE REQUIRING 1 (TH1); FUNCTIONS IN: thiamin-phosphate diphosphorylase activity, phosphomethylpyrimidine kinase activity, hydroxymethylpyrimidine kinase activity; INVOLVED IN: thiamin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiamine monophosphate synthase (InterPro:IPR003733), Phosphomethylpyrimidine kinase type-2 (InterPro:IPR004399), Aldolase-type TIM barrel (InterPro:IPR013785), Phosphomethylpyrimidine kinase type-1 (InterPro:IPR013749); Has 9884 Blast hits to 9818 proteins in 1390 species: Archae - 206; Bacteria - 6393; Metazoa - 141; Fungi - 213; Plants - 58; Viruses - 0; Other Eukaryotes - 2873 (source: NCBI BLink).  protein_id AT1G22940.1p  transcript_id AT1G22940.1  protein_id AT1G22940.1p  transcript_id AT1G22940.1  
At1g22950	chr1:008126860	0.0	C/8126860-8127168,8126727-8126774,8126459-8126635,8126223-8126373,8126047-8126133,8125838-8125962,8125641-8125759,8125447-8125558,8125291-8125356	AT1G22950.1  CDS  gene_syn F19G10.24, F19G10_24  go_process protein metabolic process|GO:0019538||IEA  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||IEA  go_component cellular_component|GO:0005575||ND  product iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors  note iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding; INVOLVED IN: protein metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT3G18210.2); Has 343 Blast hits to 342 proteins in 56 species: Archae - 0; Bacteria - 16; Metazoa - 252; Fungi - 0; Plants - 36; Viruses - 3; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT1G22950.1p  transcript_id AT1G22950.1  protein_id AT1G22950.1p  transcript_id AT1G22950.1  
At1g22960	chr1:008128086	0.0	C/8128086-8130242	AT1G22960.1  CDS  gene_syn F19G10.9, F19G10_9  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: EMB2745 (EMBRYO DEFECTIVE 2745) (TAIR:AT5G39710.1); Has 24639 Blast hits to 6022 proteins in 188 species: Archae - 4; Bacteria - 28; Metazoa - 847; Fungi - 689; Plants - 21875; Viruses - 0; Other Eukaryotes - 1196 (source: NCBI BLink).  protein_id AT1G22960.1p  transcript_id AT1G22960.1  protein_id AT1G22960.1p  transcript_id AT1G22960.1  
At1g22970	chr1:008132125	0.0	C/8132125-8132199,8131946-8132039,8131654-8131863,8130840-8131534	AT1G22970.1  CDS  gene_syn F19G10.8, F19G10_8  product unknown protein  note unknown protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G71150.1); Has 102 Blast hits to 102 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 9; Plants - 27; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G22970.1p  transcript_id AT1G22970.1  protein_id AT1G22970.1p  transcript_id AT1G22970.1  
At1g22980	chr1:008134091	0.0	C/8134091-8134165,8133907-8134000,8133604-8133813,8132775-8133433,8132649-8132690	AT1G22980.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22970.1); Has 31 Blast hits to 31 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22980.1p  transcript_id AT1G22980.1  protein_id AT1G22980.1p  transcript_id AT1G22980.1  
At1g22985	chr1:008135346	0.0	C/8135346-8135825	AT1G22985.1  CDS  function encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT1G71130.1); Has 3629 Blast hits to 3546 proteins in 200 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3618; Viruses - 2; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G22985.1p  transcript_id AT1G22985.1  protein_id AT1G22985.1p  transcript_id AT1G22985.1  
At1g22990	chr1:008139221	0.0	W/8139221-8139307,8139396-8139471,8139750-8140045	AT1G22990.1  CDS  gene_syn F19G10.25  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related  note heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related (TAIR:AT1G71050.1); Has 630 Blast hits to 584 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 9; Plants - 619; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22990.1p  transcript_id AT1G22990.1  protein_id AT1G22990.1p  transcript_id AT1G22990.1  
At1g23000	chr1:008143614	0.0	W/8143614-8143652,8143741-8143816,8143904-8144865	AT1G23000.1  CDS  gene_syn F19G10.6, F19G10_6  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT3G06130.1); Has 1790 Blast hits to 1499 proteins in 100 species: Archae - 0; Bacteria - 31; Metazoa - 175; Fungi - 36; Plants - 724; Viruses - 0; Other Eukaryotes - 824 (source: NCBI BLink).  protein_id AT1G23000.1p  transcript_id AT1G23000.1  protein_id AT1G23000.1p  transcript_id AT1G23000.1  
At1g23010	chr1:008147353	0.0	W/8147353-8147583,8147906-8149030,8149104-8149439,8149527-8149580	AT1G23010.1  CDS  gene_syn F19G10.5, F19G10_5, LPR1, Low Phosphate Root1  gene LPR1  function Encodes a protein with multicopper oxidase activity.  go_component endomembrane system|GO:0012505||IEA  go_process cellular response to phosphate starvation|GO:0016036|17496893|IMP  go_function copper ion binding|GO:0005507||ISS  go_function oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor|GO:0016682|17496893|IDA  product LPR1 (Low Phosphate Root1); copper ion binding / oxidoreductase, acting on diphenols and related substances as donors, oxygen as acceptor  note Low Phosphate Root1 (LPR1); FUNCTIONS IN: oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor, copper ion binding; INVOLVED IN: cellular response to phosphate starvation; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: LPR2 (Low Phosphate Root2); copper ion binding / oxidoreductase (TAIR:AT1G71040.1); Has 1882 Blast hits to 1596 proteins in 474 species: Archae - 8; Bacteria - 1544; Metazoa - 13; Fungi - 55; Plants - 145; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT1G23010.1p  transcript_id AT1G23010.1  protein_id AT1G23010.1p  transcript_id AT1G23010.1  
At1g23020	chr1:008153180	0.0	C/8153180-8153357,8152968-8153070,8152670-8152870,8152034-8152268,8151500-8151827,8151173-8151416,8150429-8151081,8150187-8150326	AT1G23020.1  CDS  gene_syn ATFRO3, F19G10.4, F19G10_4, FERRIC REDUCTION OXIDASE 3, FRO3  gene FRO3  function Encodes a ferric chelate reductase whose transcription is regulated by FIT1. Expressed in the root, shoot, flower and cotyledon.  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  go_function ferric-chelate reductase activity|GO:0000293|16006655|IDA  go_function ferric-chelate reductase activity|GO:0000293||ISS  product FRO3; ferric-chelate reductase  note FRO3; FUNCTIONS IN: ferric-chelate reductase activity; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Ferric reductase, NAD binding (InterPro:IPR013121), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130); BEST Arabidopsis thaliana protein match is: FRO1 (FERRIC REDUCTION OXIDASE 1); ferric-chelate reductase (TAIR:AT1G01590.1); Has 1691 Blast hits to 1690 proteins in 254 species: Archae - 0; Bacteria - 161; Metazoa - 468; Fungi - 710; Plants - 251; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT1G23020.1p  transcript_id AT1G23020.1  protein_id AT1G23020.1p  transcript_id AT1G23020.1  
At1g23030	chr1:008156745	0.0	W/8156745-8157023,8157200-8157712,8157796-8158842	AT1G23030.1  CDS  gene_syn F19G10.3, F19G10_3  go_component ubiquitin ligase complex|GO:0000151||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  go_process response to chitin|GO:0010200|17722694|IEP  product armadillo/beta-catenin repeat family protein / U-box domain-containing protein  note armadillo/beta-catenin repeat family protein / U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein / U-box domain-containing protein (TAIR:AT1G71020.1); Has 4743 Blast hits to 3238 proteins in 215 species: Archae - 0; Bacteria - 20; Metazoa - 1811; Fungi - 490; Plants - 1894; Viruses - 3; Other Eukaryotes - 525 (source: NCBI BLink).  protein_id AT1G23030.1p  transcript_id AT1G23030.1  protein_id AT1G23030.1p  transcript_id AT1G23030.1  
At1g23037	chr1:008162414	0.0	W/8162414-8162526,8162774-8163149	AT1G23037.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated type 3 (InterPro:IPR013187); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G52320.1).  protein_id AT1G23037.1p  transcript_id AT1G23037.1  protein_id AT1G23037.1p  transcript_id AT1G23037.1  
At1g23040	chr1:008165025	0.0	W/8165025-8165459	AT1G23040.1  CDS  gene_syn F19G10.19  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT1G70990.1); Has 24570 Blast hits to 9974 proteins in 625 species: Archae - 38; Bacteria - 2365; Metazoa - 9097; Fungi - 1965; Plants - 6452; Viruses - 1327; Other Eukaryotes - 3326 (source: NCBI BLink).  protein_id AT1G23040.1p  transcript_id AT1G23040.1  protein_id AT1G23040.1p  transcript_id AT1G23040.1  
At1g23050	chr1:008168631	0.0	W/8168631-8169116	AT1G23050.1  CDS  gene_syn F19G10.1  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: stem, inflorescence meristem, flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 4687 Blast hits to 2769 proteins in 267 species: Archae - 0; Bacteria - 258; Metazoa - 1639; Fungi - 503; Plants - 1568; Viruses - 205; Other Eukaryotes - 514 (source: NCBI BLink).  protein_id AT1G23050.1p  transcript_id AT1G23050.1  protein_id AT1G23050.1p  transcript_id AT1G23050.1  
At1g23060	chr1:008171619	0.0	C/8171619-8172043,8171364-8171532,8170946-8171272	AT1G23060.2  CDS  gene_syn T26J12.16, T26J12_16  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70950.1); Has 291 Blast hits to 257 proteins in 80 species: Archae - 0; Bacteria - 32; Metazoa - 137; Fungi - 19; Plants - 32; Viruses - 3; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT1G23060.2p  transcript_id AT1G23060.2  protein_id AT1G23060.2p  transcript_id AT1G23060.2  
At1g23060	chr1:008172698	0.0	C/8172698-8172739,8171619-8172184,8171364-8171532,8170946-8171272	AT1G23060.1  CDS  gene_syn T26J12.16, T26J12_16  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70950.1); Has 368 Blast hits to 334 proteins in 83 species: Archae - 0; Bacteria - 32; Metazoa - 145; Fungi - 21; Plants - 89; Viruses - 3; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT1G23060.1p  transcript_id AT1G23060.1  protein_id AT1G23060.1p  transcript_id AT1G23060.1  
At1g23070	chr1:008175621	0.0	C/8175621-8175758,8175468-8175524,8175280-8175388,8175015-8175193,8174852-8174940,8174522-8174771,8174011-8174400	AT1G23070.1  CDS  gene_syn T26J12.15, T26J12_15  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF300 (InterPro:IPR005178); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38360.2); Has 592 Blast hits to 587 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 257; Fungi - 123; Plants - 128; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT1G23070.1p  transcript_id AT1G23070.1  protein_id AT1G23070.1p  transcript_id AT1G23070.1  
At1g23074	chr1:008177832	0.0	W/8177832-8177996	AT1G23074.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G23074.1p  transcript_id AT1G23074.1  protein_id AT1G23074.1p  transcript_id AT1G23074.1  
At1g23080	chr1:008182206	0.0	C/8182206-8183406,8181858-8182128,8181682-8181767,8181083-8181240,8180926-8181002,8180768-8180834	AT1G23080.1  CDS  gene_syn PIN-FORMED 7, PIN7, T26J12.14, T26J12_14  gene PIN7  function Encodes a novel component of auxin efflux that is located apically in the basal cell and is involved during embryogenesis in setting up the apical-basal axis in the embryo. It is also involved in pattern specification during root development. In roots, it is expressed at lateral and basal membranes of provascular cells in the meristem and elongation zone, whereas in the columella cells it coincides with the PIN3 domain. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. PINs are directly involved of in catalyzing cellular auxin efflux.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component plasma membrane|GO:0005886|16601150|IDA  go_process pattern specification process|GO:0007389|15635403|IGI  go_process auxin polar transport|GO:0009926|16601150|IMP  go_process auxin polar transport|GO:0009926||ISS  go_process longitudinal axis specification|GO:0009942|14614497|IMP  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_process root development|GO:0048364|15635403|IGI  go_function transporter activity|GO:0005215||ISS  go_function auxin:hydrogen symporter activity|GO:0009672||ISS  go_function auxin efflux transmembrane transporter activity|GO:0010329|16601150|IDA  product PIN7 (PIN-FORMED 7); auxin efflux transmembrane transporter/ auxin:hydrogen symporter/ transporter  note PIN-FORMED 7 (PIN7); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity, auxin efflux transmembrane transporter activity; INVOLVED IN: response to cyclopentenone, root development, longitudinal axis specification, auxin polar transport, pattern specification process; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: PIN3 (PIN-FORMED 3); auxin:hydrogen symporter/ transporter (TAIR:AT1G70940.1); Has 1079 Blast hits to 992 proteins in 269 species: Archae - 31; Bacteria - 500; Metazoa - 7; Fungi - 2; Plants - 251; Viruses - 0; Other Eukaryotes - 288 (source: NCBI BLink).  protein_id AT1G23080.1p  transcript_id AT1G23080.1  protein_id AT1G23080.1p  transcript_id AT1G23080.1  
At1g23080	chr1:008182218	0.0	C/8182218-8183406,8181858-8182128,8181644-8181767	AT1G23080.2  CDS  gene_syn PIN-FORMED 7, PIN7, T26J12.14, T26J12_14  gene PIN7  function Encodes a novel component of auxin efflux that is located apically in the basal cell and is involved during embryogenesis in setting up the apical-basal axis in the embryo. It is also involved in pattern specification during root development. In roots, it is expressed at lateral and basal membranes of provascular cells in the meristem and elongation zone, whereas in the columella cells it coincides with the PIN3 domain. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. PINs are directly involved of in catalyzing cellular auxin efflux.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component plasma membrane|GO:0005886|16601150|IDA  go_process pattern specification process|GO:0007389|15635403|IGI  go_process auxin polar transport|GO:0009926|16601150|IMP  go_process auxin polar transport|GO:0009926||ISS  go_process longitudinal axis specification|GO:0009942|14614497|IMP  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_process root development|GO:0048364|15635403|IGI  go_function transporter activity|GO:0005215||ISS  go_function auxin:hydrogen symporter activity|GO:0009672||ISS  go_function auxin efflux transmembrane transporter activity|GO:0010329|16601150|IDA  product PIN7 (PIN-FORMED 7); auxin efflux transmembrane transporter/ auxin:hydrogen symporter/ transporter  note PIN-FORMED 7 (PIN7); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity, auxin efflux transmembrane transporter activity; INVOLVED IN: response to cyclopentenone, root development, longitudinal axis specification, auxin polar transport, pattern specification process; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: PIN3 (PIN-FORMED 3); auxin:hydrogen symporter/ transporter (TAIR:AT1G70940.1); Has 401 Blast hits to 351 proteins in 78 species: Archae - 0; Bacteria - 88; Metazoa - 5; Fungi - 2; Plants - 247; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT1G23080.2p  transcript_id AT1G23080.2  protein_id AT1G23080.2p  transcript_id AT1G23080.2  
At1g23080	chr1:008182218	0.0	C/8182218-8183406,8181858-8182128,8181682-8181767,8181083-8181240,8180926-8181002,8180768-8180834	AT1G23080.3  CDS  gene_syn PIN-FORMED 7, PIN7, T26J12.14, T26J12_14  gene PIN7  function Encodes a novel component of auxin efflux that is located apically in the basal cell and is involved during embryogenesis in setting up the apical-basal axis in the embryo. It is also involved in pattern specification during root development. In roots, it is expressed at lateral and basal membranes of provascular cells in the meristem and elongation zone, whereas in the columella cells it coincides with the PIN3 domain. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. PINs are directly involved of in catalyzing cellular auxin efflux.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component plasma membrane|GO:0005886|16601150|IDA  go_process pattern specification process|GO:0007389|15635403|IGI  go_process auxin polar transport|GO:0009926|16601150|IMP  go_process auxin polar transport|GO:0009926||ISS  go_process longitudinal axis specification|GO:0009942|14614497|IMP  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_process root development|GO:0048364|15635403|IGI  go_function transporter activity|GO:0005215||ISS  go_function auxin:hydrogen symporter activity|GO:0009672||ISS  go_function auxin efflux transmembrane transporter activity|GO:0010329|16601150|IDA  product PIN7 (PIN-FORMED 7); auxin efflux transmembrane transporter/ auxin:hydrogen symporter/ transporter  note PIN-FORMED 7 (PIN7); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity, auxin efflux transmembrane transporter activity; INVOLVED IN: response to cyclopentenone, root development, longitudinal axis specification, auxin polar transport, pattern specification process; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: PIN3 (PIN-FORMED 3); auxin:hydrogen symporter/ transporter (TAIR:AT1G70940.1); Has 1079 Blast hits to 992 proteins in 270 species: Archae - 31; Bacteria - 500; Metazoa - 5; Fungi - 2; Plants - 251; Viruses - 0; Other Eukaryotes - 290 (source: NCBI BLink).  protein_id AT1G23080.3p  transcript_id AT1G23080.3  protein_id AT1G23080.3p  transcript_id AT1G23080.3  
At1g23090	chr1:008188706	0.0	C/8188706-8188954,8188541-8188589,8188248-8188455,8187539-8187710,8187396-8187461,8187017-8187130,8186813-8186929,8186022-8186626,8185728-8185813,8185486-8185562,8185238-8185390	AT1G23090.1  CDS  gene_syn AST91, SULFATE TRANSPORTER, SULFATE TRANSPORTER 91, SULTR3;3, T26J12.13, T26J12_13  gene AST91  function Encodes AST91 mRNA for sulfate transporter.  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process sulfate transport|GO:0008272||IEA  go_function sulfate transmembrane transporter activity|GO:0015116||ISS  product AST91 (SULFATE TRANSPORTER 91); sulfate transmembrane transporter  note SULFATE TRANSPORTER 91 (AST91); FUNCTIONS IN: sulfate transmembrane transporter activity; INVOLVED IN: sulfate transport, transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sulphate transporter (InterPro:IPR011547), Sulphate transporter/antisigma-factor antagonist STAS (InterPro:IPR002645), Sulphate anion transporter, conserved site (InterPro:IPR018045), Sulphate anion transporter (InterPro:IPR001902); BEST Arabidopsis thaliana protein match is: SULTR3;4 (SULFATE TRANSPORTER 3;4); sulfate transmembrane transporter (TAIR:AT3G15990.1); Has 6935 Blast hits to 6881 proteins in 1100 species: Archae - 36; Bacteria - 3528; Metazoa - 981; Fungi - 315; Plants - 324; Viruses - 0; Other Eukaryotes - 1751 (source: NCBI BLink).  protein_id AT1G23090.1p  transcript_id AT1G23090.1  protein_id AT1G23090.1p  transcript_id AT1G23090.1  
At1g23100	chr1:008195867	0.0	W/8195867-8195971,8196057-8196196,8196288-8196336	AT1G23100.1  CDS  gene_syn T26J12.12, T26J12_12  go_process protein folding|GO:0006457||IEA  go_function ATP binding|GO:0005524||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  product 10 kDa chaperonin, putative  note 10 kDa chaperonin, putative; FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Chaperonin Cpn10, conserved site (InterPro:IPR018369), Chaperonin Cpn10 (InterPro:IPR001476); BEST Arabidopsis thaliana protein match is: CPN10 (CHAPERONIN 10); chaperone binding (TAIR:AT1G14980.1); Has 5807 Blast hits to 5744 proteins in 1499 species: Archae - 0; Bacteria - 3188; Metazoa - 245; Fungi - 75; Plants - 201; Viruses - 2; Other Eukaryotes - 2096 (source: NCBI BLink).  protein_id AT1G23100.1p  transcript_id AT1G23100.1  protein_id AT1G23100.1p  transcript_id AT1G23100.1  
At1g23110	chr1:008197499	0.0	C/8197499-8197665,8197364-8197419,8197199-8197277,8196993-8197131,8196608-8196913	AT1G23110.1  CDS  gene_syn T26J12.20, T26J12_20  go_component chloroplast|GO:0009507||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70900.1); Has 29 Blast hits to 29 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23110.1p  transcript_id AT1G23110.1  protein_id AT1G23110.1p  transcript_id AT1G23110.1  
At1g23110	chr1:008197499	0.0	C/8197499-8197665,8197364-8197419,8197199-8197277,8196993-8197131,8196608-8196913	AT1G23110.2  CDS  gene_syn T26J12.20, T26J12_20  go_component chloroplast|GO:0009507||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70900.1); Has 29 Blast hits to 29 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23110.2p  transcript_id AT1G23110.2  protein_id AT1G23110.2p  transcript_id AT1G23110.2  
At1g23110	chr1:008197499	0.0	C/8197499-8197665,8197364-8197419,8197199-8197277,8196993-8197131,8196608-8196913	AT1G23110.3  CDS  gene_syn T26J12.20, T26J12_20  go_component chloroplast|GO:0009507||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70900.1); Has 29 Blast hits to 29 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23110.3p  transcript_id AT1G23110.3  protein_id AT1G23110.3p  transcript_id AT1G23110.3  
At1g23120	chr1:008198788	0.0	W/8198788-8198962,8199088-8199359	AT1G23120.1  CDS  gene_syn T26J12.11, T26J12_11  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product major latex protein-related / MLP-related  note major latex protein-related / MLP-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: major latex protein-related / MLP-related (TAIR:AT1G70870.1); Has 258 Blast hits to 238 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 258; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23120.1p  transcript_id AT1G23120.1  protein_id AT1G23120.1p  transcript_id AT1G23120.1  
At1g23130	chr1:008200434	0.0	W/8200434-8200638,8200720-8200997	AT1G23130.1  CDS  gene_syn T26J12.10, T26J12_10  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product Bet v I allergen family protein  note Bet v I allergen family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: MLP31 (MLP-LIKE PROTEIN 31) (TAIR:AT1G70840.1); Has 227 Blast hits to 205 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 227; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23130.1p  transcript_id AT1G23130.1  protein_id AT1G23130.1p  transcript_id AT1G23130.1  
At1g23140	chr1:008203062	0.0	C/8203062-8203172,8202762-8202857,8202362-8202652	AT1G23140.1  CDS  gene_syn T26J12.9, T26J12_9  go_component plasma membrane|GO:0005886|17644812|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT1G70810.1); Has 1912 Blast hits to 1663 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 1142; Fungi - 196; Plants - 393; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink).  protein_id AT1G23140.1p  transcript_id AT1G23140.1  protein_id AT1G23140.1p  transcript_id AT1G23140.1  
At1g23145	chr1:008203962	0.0	W/8203962-8204255	AT1G23145.1  CDS  gene_syn RALF-LIKE 2, RALFL2  gene RALFL2  function Rapid alkalinization factor (RALF) family protein. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  go_component apoplast|GO:0048046|12611624|ISS  go_process cell-cell signaling|GO:0007267|12611624|ISS  go_function signal transducer activity|GO:0004871|12611624|TAS  product RALFL2 (RALF-LIKE 2); signal transducer  note RALF-LIKE 2 (RALFL2); FUNCTIONS IN: signal transducer activity; INVOLVED IN: cell-cell signaling; LOCATED IN: apoplast; CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALFL3 (RALF-LIKE 3); signal transducer (TAIR:AT1G23147.1); Has 17 Blast hits to 17 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23145.1p  transcript_id AT1G23145.1  protein_id AT1G23145.1p  transcript_id AT1G23145.1  
At1g23147	chr1:008205934	0.0	W/8205934-8206206	AT1G23147.1  CDS  gene_syn RALF-LIKE 3, RALFL3  gene RALFL3  function Rapid alkalinization factor (RALF) family protein. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  go_component apoplast|GO:0048046|12611624|ISS  go_process cell-cell signaling|GO:0007267|12611624|ISS  go_function signal transducer activity|GO:0004871|12611624|TAS  product RALFL3 (RALF-LIKE 3); signal transducer  note RALF-LIKE 3 (RALFL3); FUNCTIONS IN: signal transducer activity; INVOLVED IN: cell-cell signaling; LOCATED IN: apoplast; CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALFL2 (RALF-LIKE 2); signal transducer (TAIR:AT1G23145.1); Has 17 Blast hits to 17 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23147.1p  transcript_id AT1G23147.1  protein_id AT1G23147.1p  transcript_id AT1G23147.1  
At1g23149	chr1:008206714	0.0	W/8206714-8206869	AT1G23149.1  CDS  gene_syn CPuORF29, Conserved peptide upstream open reading frame 29  gene CPuORF29  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF29 represents a conserved upstream opening reading frame relative to major ORF AT1G23150.1  product CPuORF29 (Conserved peptide upstream open reading frame 29)  note Conserved peptide upstream open reading frame 29 (CPuORF29); BEST Arabidopsis thaliana protein match is: CPuORF28 (Conserved peptide upstream open reading frame 28) (TAIR:AT1G70782.1); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23149.1p  transcript_id AT1G23149.1  protein_id AT1G23149.1p  transcript_id AT1G23149.1  
At1g23150	chr1:008206948	0.0	W/8206948-8207176,8207265-8207461	AT1G23150.1  CDS  gene_syn T26J12.8, T26J12_8  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70780.1); Has 61 Blast hits to 61 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23150.1p  transcript_id AT1G23150.1  protein_id AT1G23150.1p  transcript_id AT1G23150.1  
At1g23160	chr1:008209232	0.0	W/8209232-8209524,8209677-8209778,8209876-8210657,8210766-8211325	AT1G23160.1  CDS  gene_syn T26J12.7, T26J12_7  go_process response to auxin stimulus|GO:0009733||ISS  product auxin-responsive GH3 family protein  note auxin-responsive GH3 family protein; INVOLVED IN: response to auxin stimulus; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: PBS3 (AVRPPHB SUSCEPTIBLE 3) (TAIR:AT5G13320.1); Has 673 Blast hits to 654 proteins in 104 species: Archae - 0; Bacteria - 166; Metazoa - 51; Fungi - 2; Plants - 219; Viruses - 0; Other Eukaryotes - 235 (source: NCBI BLink).  protein_id AT1G23160.1p  transcript_id AT1G23160.1  protein_id AT1G23160.1p  transcript_id AT1G23160.1  
At1g23170	chr1:008212724	0.0	W/8212724-8213230,8213571-8213759,8213966-8214103,8214213-8214331,8214410-8214542,8214623-8214752,8214835-8214914,8215005-8215145,8215244-8215516	AT1G23170.1  CDS  gene_syn T26J12.6, T26J12_6  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70770.1); Has 87 Blast hits to 87 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 59; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23170.1p  transcript_id AT1G23170.1  protein_id AT1G23170.1p  transcript_id AT1G23170.1  
At1g23180	chr1:008216125	0.0	W/8216125-8216379,8216524-8216883,8216974-8217189,8217408-8218066,8218148-8218244,8218347-8218400,8218481-8218521,8218619-8218809,8218884-8219515	AT1G23180.1  CDS  gene_syn T26J12.19, T26J12_19  go_component chloroplast|GO:0009507|18431481|IDA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product armadillo/beta-catenin repeat family protein  note armadillo/beta-catenin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein / F-box family protein (TAIR:AT2G44900.1); Has 1577 Blast hits to 1070 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 532; Fungi - 257; Plants - 682; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).  protein_id AT1G23180.1p  transcript_id AT1G23180.1  protein_id AT1G23180.1p  transcript_id AT1G23180.1  
At1g23190	chr1:008219946	0.0	W/8219946-8220023,8220612-8220693,8220781-8220836,8221190-8221303,8221439-8221501,8221647-8221766,8221853-8221953,8222059-8222118,8222220-8222319,8222413-8222570,8222658-8222753,8222863-8222926,8223013-8223094,8223177-8223355,8223447-8223523,8223634-8223766,8223879-8223995,8224115-8224186	AT1G23190.1  CDS  gene_syn T26J12.5, T26J12_5  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function magnesium ion binding|GO:0000287||IEA  go_function intramolecular transferase activity, phosphotransferases|GO:0016868||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function phosphoglucomutase activity|GO:0004614||ISS  product phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative  note phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative; FUNCTIONS IN: intramolecular transferase activity, phosphotransferases, magnesium ion binding, phosphoglucomutase activity; INVOLVED IN: response to cadmium ion, carbohydrate metabolic process; LOCATED IN: cytosol, nucleus, plasma membrane, chloroplast, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-D-phosphohexomutase, C-terminal (InterPro:IPR005843), Alpha-D-phosphohexomutase, conserved site (InterPro:IPR016066), Alpha-D-phosphohexomutase, alpha/beta/alpha I, II and III (InterPro:IPR016055), Alpha-D-phosphohexomutase, alpha/beta/alpha domain III (InterPro:IPR005846), Alpha-D-phosphohexomutase, alpha/beta/alpha domain II (InterPro:IPR005845), Alpha-D-phosphohexomutase, N-terminal (InterPro:IPR005841), Alpha-D-phosphohexomutase, alpha/beta/alpha domain I (InterPro:IPR005844); BEST Arabidopsis thaliana protein match is: phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative (TAIR:AT1G70730.3); Has 4473 Blast hits to 4462 proteins in 1171 species: Archae - 68; Bacteria - 2876; Metazoa - 457; Fungi - 136; Plants - 117; Viruses - 0; Other Eukaryotes - 819 (source: NCBI BLink).  protein_id AT1G23190.1p  transcript_id AT1G23190.1  protein_id AT1G23190.1p  transcript_id AT1G23190.1  
At1g23200	chr1:008227236	0.0	W/8227236-8228235,8228736-8229400	AT1G23200.1  CDS  gene_syn F26F24.2  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT2G45220.1); Has 1490 Blast hits to 1459 proteins in 273 species: Archae - 6; Bacteria - 408; Metazoa - 1; Fungi - 133; Plants - 940; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G23200.1p  transcript_id AT1G23200.1  protein_id AT1G23200.1p  transcript_id AT1G23200.1  
At1g23201	chr1:008230209	0.0	W/8230209-8230775	AT1G23201.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: GCK (InterPro:IPR012891); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G02210.1).  protein_id AT1G23201.1p  transcript_id AT1G23201.1  protein_id AT1G23201.1p  transcript_id AT1G23201.1  
At1g23205	chr1:008234234	0.0	C/8234234-8234851	AT1G23205.1  CDS  gene_syn F26F24.4, F26F24_4  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT1G70720.1); Has 417 Blast hits to 412 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 417; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23205.1p  transcript_id AT1G23205.1  protein_id AT1G23205.1p  transcript_id AT1G23205.1  
At1g23210	chr1:008240174	0.0	W/8240174-8240788,8241118-8241210,8241283-8241720,8241806-8242129	AT1G23210.1  CDS  gene_syn Arabidopsis thaliana glycosyl hydrolase 9B6, AtGH9B6, F26F24.6, F26F24_6  gene AtGH9B6  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product AtGH9B6 (Arabidopsis thaliana glycosyl hydrolase 9B6); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds  note Arabidopsis thaliana glycosyl hydrolase 9B6 (AtGH9B6); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: ATGH9B1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B1); cellulase/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G70710.1); Has 1102 Blast hits to 1098 proteins in 187 species: Archae - 0; Bacteria - 301; Metazoa - 138; Fungi - 14; Plants - 622; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT1G23210.1p  transcript_id AT1G23210.1  protein_id AT1G23210.1p  transcript_id AT1G23210.1  
At1g23220	chr1:008242614	0.0	W/8242614-8242844,8243978-8244136	AT1G23220.1  CDS  gene_syn F26F24.7, F26F24_7  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based process|GO:0007017||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_component microtubule associated complex|GO:0005875||ISS  go_process microtubule-based process|GO:0007017||ISS  go_function microtubule motor activity|GO:0003777||ISS  product dynein light chain type 1 family protein  note dynein light chain type 1 family protein; FUNCTIONS IN: microtubule motor activity; INVOLVED IN: microtubule-based process; LOCATED IN: microtubule associated complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dynein light chain, type 1 and 2 (InterPro:IPR001372); BEST Arabidopsis thaliana protein match is: dynein light chain, putative (TAIR:AT5G20110.1); Has 867 Blast hits to 867 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 472; Fungi - 71; Plants - 120; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink).  protein_id AT1G23220.1p  transcript_id AT1G23220.1  protein_id AT1G23220.1p  transcript_id AT1G23220.1  
At1g23230	chr1:008244481	0.0	W/8244481-8244588,8244669-8244712,8244799-8244898,8244986-8245924,8246061-8246303,8246511-8246780,8246890-8247091,8247189-8247460,8247676-8247759,8247855-8247949,8248097-8248259,8248353-8248769,8248853-8248966,8249047-8249172,8249248-8249396,8249642-8249882,8250061-8250847,8250920-8251101,8251347-8251450,8251534-8251741	AT1G23230.1  CDS  gene_syn F26F24.8, F26F24_8  go_process response to salt stress|GO:0009651|11351099|IEP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 128 Blast hits to 125 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G23230.1p  transcript_id AT1G23230.1  protein_id AT1G23230.1p  transcript_id AT1G23230.1  
At1g23240	chr1:008254051	0.0	C/8254051-8254129,8253818-8253903,8253454-8253548,8253198-8253323,8252894-8253062	AT1G23240.3  CDS  gene_syn F26F24.33, F26F24_33  go_component extracellular region|GO:0005576|11431566|IDA  go_function calcium ion binding|GO:0005509||ISS  go_function lipase activity|GO:0016298|11431566|ISS  product caleosin-related family protein  note caleosin-related family protein; FUNCTIONS IN: lipase activity, calcium ion binding; LOCATED IN: extracellular region; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, 4 leaf senescence stage, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: caleosin-related family protein (TAIR:AT1G70670.1); Has 230 Blast hits to 225 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 46; Plants - 181; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G23240.3p  transcript_id AT1G23240.3  protein_id AT1G23240.3p  transcript_id AT1G23240.3  
At1g23240	chr1:008254051	0.0	C/8254051-8254234,8253818-8253903,8253454-8253548,8253164-8253323	AT1G23240.2  CDS  gene_syn F26F24.33, F26F24_33  go_component extracellular region|GO:0005576|11431566|IDA  go_function calcium ion binding|GO:0005509||ISS  go_function lipase activity|GO:0016298|11431566|ISS  product caleosin-related family protein  note caleosin-related family protein; FUNCTIONS IN: lipase activity, calcium ion binding; LOCATED IN: extracellular region; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, 4 leaf senescence stage, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: caleosin-related family protein (TAIR:AT1G70670.1); Has 227 Blast hits to 222 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 44; Plants - 181; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G23240.2p  transcript_id AT1G23240.2  protein_id AT1G23240.2p  transcript_id AT1G23240.2  
At1g23240	chr1:008254440	0.0	C/8254440-8254494,8254051-8254152,8253818-8253903,8253454-8253548,8253198-8253323,8252894-8253062	AT1G23240.1  CDS  gene_syn F26F24.33, F26F24_33  go_component extracellular region|GO:0005576|11431566|IDA  go_function calcium ion binding|GO:0005509||ISS  go_function lipase activity|GO:0016298|11431566|ISS  product caleosin-related family protein  note caleosin-related family protein; FUNCTIONS IN: lipase activity, calcium ion binding; LOCATED IN: extracellular region; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, 4 leaf senescence stage, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: caleosin-related family protein (TAIR:AT1G70670.1); Has 230 Blast hits to 225 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 46; Plants - 181; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G23240.1p  transcript_id AT1G23240.1  protein_id AT1G23240.1p  transcript_id AT1G23240.1  
At1g23250	chr1:008256760	0.0	C/8256760-8256770,8256524-8256560,8256210-8256311,8256014-8256100,8255744-8255832,8255518-8255643,8255233-8255398	AT1G23250.1  CDS  gene_syn F26F24.9, F26F24_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium ion binding  note calcium ion binding; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, sepal, flower, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: caleosin-related family protein (TAIR:AT1G23240.3); Has 182 Blast hits to 181 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 44; Plants - 137; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G23250.1p  transcript_id AT1G23250.1  protein_id AT1G23250.1p  transcript_id AT1G23250.1  
At1g23260	chr1:008258546	0.0	C/8258546-8258573,8258185-8258324,8257670-8257795,8257451-8257577,8257209-8257264	AT1G23260.1  CDS  gene_syn F26F24.10, F26F24_10, MMS ZWEI HOMOLOGUE 1, MMZ1, UBIQUITIN E2 VARIANT 1A, UEV1A  gene MMZ1  function MMZ1/UEV1A encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1A can form diubiquitin and triubiquitin chains in combination with UBC13A/UBC35 in vitro. It can also functionally complement an mms2 mutation in budding yeast, both by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS, and by reducing the rate of spontaneous DNA mutation. However, a combination of MMZ1/UEV1A and UBC13A do not do a good job of rescuing an mms2 ubc13 double mutant in yeast. MMZ1/UEV1A transcripts are found at low levels in most plant organs, but cannot be detected in the pollen. Transcript levels do not appear to be stress-inducible. The uev1a-1 mutant shows normal sensitivity to MMS in germination assays suggesting that UEV1A is not required for DNA damage tolerance during this developmental stage.  go_component UBC13-MMS2 complex|GO:0031372|18178771|IPI  go_process postreplication repair|GO:0006301|18178771|IGI  go_function ubiquitin-protein ligase activity|GO:0004842|18178771|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|18178771|IPI  product MMZ1 (MMS ZWEI HOMOLOGUE 1); protein binding / ubiquitin-protein ligase  note MMS ZWEI HOMOLOGUE 1 (MMZ1); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: postreplication repair; LOCATED IN: UBC13-MMS2 complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: MMZ2 (MMS ZWEI HOMOLOGE 2); protein binding / ubiquitin-protein ligase (TAIR:AT1G70660.1); Has 3313 Blast hits to 3313 proteins in 239 species: Archae - 0; Bacteria - 0; Metazoa - 1791; Fungi - 484; Plants - 524; Viruses - 0; Other Eukaryotes - 514 (source: NCBI BLink).  protein_id AT1G23260.1p  transcript_id AT1G23260.1  protein_id AT1G23260.1p  transcript_id AT1G23260.1  
At1g23270	chr1:008259602	0.0	C/8259602-8260144	AT1G23270.1  CDS  gene_syn F26F24.11, F26F24_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31460.1); Has 1253 Blast hits to 112 proteins in 35 species: Archae - 0; Bacteria - 36; Metazoa - 458; Fungi - 1; Plants - 16; Viruses - 0; Other Eukaryotes - 742 (source: NCBI BLink).  protein_id AT1G23270.1p  transcript_id AT1G23270.1  protein_id AT1G23270.1p  transcript_id AT1G23270.1  
At1g23280	chr1:008262589	0.0	C/8262589-8262650,8262386-8262495,8262090-8262208,8261878-8261975,8261675-8261762,8261445-8261585,8261235-8261352,8261014-8261135,8260865-8260918	AT1G23280.1  CDS  gene_syn F26F24.12, F26F24_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MAK16 protein-related  note MAK16 protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Mak16 protein (InterPro:IPR006958); Has 5463 Blast hits to 3446 proteins in 254 species: Archae - 5; Bacteria - 214; Metazoa - 2654; Fungi - 567; Plants - 207; Viruses - 131; Other Eukaryotes - 1685 (source: NCBI BLink).  protein_id AT1G23280.1p  transcript_id AT1G23280.1  protein_id AT1G23280.1p  transcript_id AT1G23280.1  
At1g23290	chr1:008263007	0.0	W/8263007-8263447	AT1G23290.1  CDS  gene_syn 60S RIBOSOMAL PROTEIN L27A, F26F24.13, F26F24_13, RIBOSOMAL PROTEIN L27A, RPL27A, RPL27AB  gene RPL27AB  function Encodes a ribosomal protein L27A, a constituent of the large subunit of the ribosomal complex. Regulated by TCP20.  go_component nucleolus|GO:0005730|15496452|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component large ribosomal subunit|GO:0015934||TAS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process translation|GO:0006412||TAS  go_function structural constituent of ribosome|GO:0003735||ISS  product RPL27AB; structural constituent of ribosome  note RPL27AB; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, nucleolus, large ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L15 (InterPro:IPR001196); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT1G70600.1); Has 835 Blast hits to 835 proteins in 319 species: Archae - 121; Bacteria - 15; Metazoa - 289; Fungi - 107; Plants - 96; Viruses - 0; Other Eukaryotes - 207 (source: NCBI BLink).  protein_id AT1G23290.1p  transcript_id AT1G23290.1  protein_id AT1G23290.1p  transcript_id AT1G23290.1  
At1g23300	chr1:008265752	0.0	C/8265752-8266048,8265372-8265641,8265027-8265298,8264851-8264937,8264728-8264784,8264412-8264650,8264193-8264311,8264019-8264105,8263827-8263946	AT1G23300.1  CDS  gene_syn F26F24.14, F26F24_14  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: drug transporter activity, antiporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT3G26590.1); Has 5382 Blast hits to 5344 proteins in 1090 species: Archae - 101; Bacteria - 3515; Metazoa - 120; Fungi - 206; Plants - 703; Viruses - 0; Other Eukaryotes - 737 (source: NCBI BLink).  protein_id AT1G23300.1p  transcript_id AT1G23300.1  protein_id AT1G23300.1p  transcript_id AT1G23300.1  
At1g23310	chr1:008271213	0.0	C/8271213-8271329,8270912-8270977,8270711-8270828,8270542-8270623,8270371-8270458,8270129-8270287,8269869-8270042,8269649-8269780,8269504-8269569,8269356-8269420,8269186-8269277,8268931-8269087,8268720-8268849	AT1G23310.1  CDS  gene_syn ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 1, AOAT1, F26F24.16, F26F24_16, GGT1, GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE  gene GGT1  function Identified by cloning the gene that corresponded to a purified protein having glyoxylate aminotransferase activity. Localized to the peroxisome and thought to be involved in photorespiration/ metabolic salvage pathway.  go_component vacuole|GO:0005773|15539469|IDA  go_component peroxisome|GO:0005777|12154131|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_component peroxisome|GO:0005777|12529529|IDA  go_component peroxisome|GO:0005777|12631323|IDA  go_process photorespiration|GO:0009853|12529529|TAS  go_process photorespiration|GO:0009853||IMP  go_function L-alanine:2-oxoglutarate aminotransferase activity|GO:0004021|12529529|IDA  go_function L-alanine:2-oxoglutarate aminotransferase activity|GO:0004021|17318317|IMP  go_function glycine:2-oxoglutarate aminotransferase activity|GO:0047958|12529529|IDA  go_function glycine:2-oxoglutarate aminotransferase activity|GO:0047958|12631323|IMP  product GGT1 (GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE); L-alanine:2-oxoglutarate aminotransferase/ glycine:2-oxoglutarate aminotransferase  note GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE (GGT1); FUNCTIONS IN: glycine:2-oxoglutarate aminotransferase activity, L-alanine:2-oxoglutarate aminotransferase activity; INVOLVED IN: photorespiration; LOCATED IN: apoplast, peroxisome, chloroplast, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2); L-alanine:2-oxoglutarate aminotransferase/ glycine:2-oxoglutarate aminotransferase (TAIR:AT1G70580.4); Has 17281 Blast hits to 17276 proteins in 1660 species: Archae - 478; Bacteria - 9668; Metazoa - 529; Fungi - 464; Plants - 878; Viruses - 0; Other Eukaryotes - 5264 (source: NCBI BLink).  protein_id AT1G23310.1p  transcript_id AT1G23310.1  protein_id AT1G23310.1p  transcript_id AT1G23310.1  
At1g23310	chr1:008271213	0.0	C/8271213-8271329,8270912-8270977,8270711-8270828,8270542-8270623,8270371-8270458,8270129-8270287,8269869-8270042,8269649-8269780,8269504-8269569,8269356-8269420,8269186-8269277,8268931-8269087,8268808-8268817	AT1G23310.2  CDS  gene_syn ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 1, AOAT1, F26F24.16, F26F24_16, GGT1, GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE  gene GGT1  function Identified by cloning the gene that corresponded to a purified protein having glyoxylate aminotransferase activity. Localized to the peroxisome and thought to be involved in photorespiration/ metabolic salvage pathway.  go_component vacuole|GO:0005773|15539469|IDA  go_component peroxisome|GO:0005777|12154131|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_component peroxisome|GO:0005777|12529529|IDA  go_component peroxisome|GO:0005777|12631323|IDA  go_process photorespiration|GO:0009853|12529529|TAS  go_process photorespiration|GO:0009853||IMP  go_function L-alanine:2-oxoglutarate aminotransferase activity|GO:0004021|12529529|IDA  go_function L-alanine:2-oxoglutarate aminotransferase activity|GO:0004021|17318317|IMP  go_function glycine:2-oxoglutarate aminotransferase activity|GO:0047958|12529529|IDA  go_function glycine:2-oxoglutarate aminotransferase activity|GO:0047958|12631323|IMP  product GGT1 (GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE); L-alanine:2-oxoglutarate aminotransferase/ glycine:2-oxoglutarate aminotransferase  note GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE (GGT1); FUNCTIONS IN: glycine:2-oxoglutarate aminotransferase activity, L-alanine:2-oxoglutarate aminotransferase activity; INVOLVED IN: photorespiration; LOCATED IN: apoplast, chloroplast, peroxisome, vacuole, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2); L-alanine:2-oxoglutarate aminotransferase/ glycine:2-oxoglutarate aminotransferase (TAIR:AT1G70580.4); Has 17075 Blast hits to 17070 proteins in 1660 species: Archae - 469; Bacteria - 9629; Metazoa - 529; Fungi - 464; Plants - 874; Viruses - 0; Other Eukaryotes - 5110 (source: NCBI BLink).  protein_id AT1G23310.2p  transcript_id AT1G23310.2  protein_id AT1G23310.2p  transcript_id AT1G23310.2  
At1g23320	chr1:008275262	0.0	C/8275262-8275350,8274795-8275098,8274244-8274527,8273691-8273980,8273423-8273622	AT1G23320.1  CDS  gene_syn F26F24.17, F26F24_17, TAR1, TRYPTOPHAN AMINOTRANSFERASE RELATED 1  gene TAR1  function Encodes a protein with similarity to the TAA1 trytophan aminotransferase involved in IAA biosynthesis. This gene appears to be expressed at a very low level during seedling development. Triple mutant analyses implicate this gene in embryonic development.  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793|18394997|IGI  go_process cotyledon vascular tissue pattern formation|GO:0010588|18394997|IGI  go_process cotyledon development|GO:0048825|18394997|IGI  go_process primary root development|GO:0080022|18394997|IGI  go_function carbon-sulfur lyase activity|GO:0016846||ISS  go_function L-tryptophan:2-oxoglutarate aminotransferase activity|GO:0050362|18394997|ISS  go_function L-tryptophan:pyruvate aminotransferase activity|GO:0080097|18394997|ISS  product TAR1 (TRYPTOPHAN AMINOTRANSFERASE RELATED 1); L-tryptophan:2-oxoglutarate aminotransferase/ L-tryptophan:pyruvate aminotransferase/ carbon-sulfur lyase  note TRYPTOPHAN AMINOTRANSFERASE RELATED 1 (TAR1); FUNCTIONS IN: L-tryptophan:2-oxoglutarate aminotransferase activity, carbon-sulfur lyase activity, L-tryptophan:pyruvate aminotransferase activity; INVOLVED IN: primary root development, cotyledon vascular tissue pattern formation, embryonic development ending in seed dormancy, cotyledon development; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Allinase, C-terminal (InterPro:IPR006948), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: TAA1 (TRYPTOPHAN AMINOTRANSFERASE OF ARABIDOPSIS 1); L-alanine:2-oxoglutarate aminotransferase/ L-glutamine:2-oxoglutarate aminotransferase/ L-leucine:2-oxoglutarate aminotransferase/ L-methionine:2-oxoglutarate aminotransferase/ L-phenylalanine:2-oxoglutarate aminotransferase/ L-phenylalanine:pyruvate aminotransferase/ L-tryptophan:2-oxoglutarate aminotransferase/ L-tryptophan:pyruvate aminotransferase/ L-tyrosine:2-oxoglutarate aminotransferase/ L-tyrosine:pyruvate aminotransferase/ carbon-sulfur lyase/ pyridoxal phosphate binding (TAIR:AT1G70560.1); Has 211 Blast hits to 210 proteins in 56 species: Archae - 14; Bacteria - 58; Metazoa - 0; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT1G23320.1p  transcript_id AT1G23320.1  protein_id AT1G23320.1p  transcript_id AT1G23320.1  
At1g23330	chr1:008281640	0.0	C/8281640-8281891,8281469-8281563,8281288-8281391,8281098-8281198,8280898-8281001,8280376-8280819,8280164-8280295,8279874-8280057	AT1G23330.1  CDS  gene_syn F26F24.20, F26F24_20  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10740.1); Has 364 Blast hits to 364 proteins in 87 species: Archae - 0; Bacteria - 252; Metazoa - 1; Fungi - 4; Plants - 26; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).  protein_id AT1G23330.1p  transcript_id AT1G23330.1  protein_id AT1G23330.1p  transcript_id AT1G23330.1  
At1g23340	chr1:008286340	0.0	C/8286340-8286528,8286167-8286253,8285853-8286062,8285401-8285565,8285237-8285290,8284977-8285123,8284158-8284535	AT1G23340.1  CDS  gene_syn F26F24.22, F26F24_22  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70550.2); Has 438 Blast hits to 405 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 10; Plants - 424; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23340.1p  transcript_id AT1G23340.1  protein_id AT1G23340.1p  transcript_id AT1G23340.1  
At1g23340	chr1:008286340	0.0	C/8286340-8286528,8286167-8286253,8285853-8286062,8285401-8285565,8285237-8285290,8284977-8285123,8284158-8284535	AT1G23340.2  CDS  gene_syn F26F24.22, F26F24_22  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70550.2); Has 438 Blast hits to 405 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 10; Plants - 424; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23340.2p  transcript_id AT1G23340.2  protein_id AT1G23340.2p  transcript_id AT1G23340.2  
At1g23350	chr1:008293696	0.0	C/8293696-8294175	AT1G23350.1  CDS  gene_syn F26F24.23, F26F24_23  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: EDA24 (embryo sac development arrest 24); enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor (TAIR:AT1G70540.1); Has 69 Blast hits to 69 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23350.1p  transcript_id AT1G23350.1  protein_id AT1G23350.1p  transcript_id AT1G23350.1  
At1g23360	chr1:008296254	0.0	C/8296254-8296339,8296025-8296158,8295879-8295940,8295677-8295776,8295421-8295521	AT1G23360.2  CDS  gene_syn F26F24.24, F26F24_24  go_function methyltransferase activity|GO:0008168||IEA  go_function methyltransferase activity|GO:0008168||ISS  product UbiE/COQ5 methyltransferase family protein  note UbiE/COQ5 methyltransferase family protein; FUNCTIONS IN: methyltransferase activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UbiE/COQ5 methyltransferase (InterPro:IPR004033); BEST Arabidopsis thaliana protein match is: UbiE/COQ5 methyltransferase family protein (TAIR:AT5G57300.2); Has 5180 Blast hits to 5180 proteins in 1278 species: Archae - 78; Bacteria - 2752; Metazoa - 99; Fungi - 102; Plants - 52; Viruses - 0; Other Eukaryotes - 2097 (source: NCBI BLink).  protein_id AT1G23360.2p  transcript_id AT1G23360.2  protein_id AT1G23360.2p  transcript_id AT1G23360.2  
At1g23360	chr1:008296254	0.0	C/8296254-8296339,8296025-8296158,8295879-8295940,8295677-8295776,8295421-8295521	AT1G23360.3  CDS  gene_syn F26F24.24, F26F24_24  go_function methyltransferase activity|GO:0008168||IEA  go_function methyltransferase activity|GO:0008168||ISS  product UbiE/COQ5 methyltransferase family protein  note UbiE/COQ5 methyltransferase family protein; FUNCTIONS IN: methyltransferase activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UbiE/COQ5 methyltransferase (InterPro:IPR004033); BEST Arabidopsis thaliana protein match is: UbiE/COQ5 methyltransferase family protein (TAIR:AT5G57300.2); Has 5180 Blast hits to 5180 proteins in 1278 species: Archae - 78; Bacteria - 2752; Metazoa - 99; Fungi - 102; Plants - 52; Viruses - 0; Other Eukaryotes - 2097 (source: NCBI BLink).  protein_id AT1G23360.3p  transcript_id AT1G23360.3  protein_id AT1G23360.3p  transcript_id AT1G23360.3  
At1g23360	chr1:008296750	0.0	C/8296750-8296893,8296594-8296658,8296419-8296509,8296254-8296342,8296025-8296158,8295879-8295940,8295677-8295776,8295421-8295521	AT1G23360.1  CDS  gene_syn F26F24.24, F26F24_24  go_component chloroplast|GO:0009507||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_function methyltransferase activity|GO:0008168||ISS  product UbiE/COQ5 methyltransferase family protein  note UbiE/COQ5 methyltransferase family protein; FUNCTIONS IN: methyltransferase activity; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UbiE/COQ5 methyltransferase (InterPro:IPR004033); BEST Arabidopsis thaliana protein match is: UbiE/COQ5 methyltransferase family protein (TAIR:AT5G57300.2); Has 10223 Blast hits to 10221 proteins in 1487 species: Archae - 351; Bacteria - 5788; Metazoa - 264; Fungi - 303; Plants - 236; Viruses - 0; Other Eukaryotes - 3281 (source: NCBI BLink).  protein_id AT1G23360.1p  transcript_id AT1G23360.1  protein_id AT1G23360.1p  transcript_id AT1G23360.1  
At1g23380	chr1:008302172	0.0	C/8302172-8302492,8301905-8302027,8301665-8301803,8297747-8297988,8297499-8297657	AT1G23380.1  CDS  gene_syn F26F24.32, F26F24_32, KNAT6, KNAT6L, KNAT6S  gene KNAT6  function homeodomain transcription factor KNAT6, belonging to class I of KN transcription factor family (which also includes KNAT1 and KNAT2). Expression is increased in as and bop1 leaf mutants.  go_component nucleus|GO:0005634||IEA  go_process meristem maintenance|GO:0010073|16798887|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|11311158|ISS  product KNAT6; DNA binding / transcription activator/ transcription factor  note KNAT6; FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: meristem maintenance; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: KNOX2 (InterPro:IPR005541), ELK (InterPro:IPR005539), KNOX1 (InterPro:IPR005540), Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2); transcription factor (TAIR:AT1G70510.1); Has 5090 Blast hits to 5090 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 1461; Fungi - 168; Plants - 3377; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT1G23380.1p  transcript_id AT1G23380.1  protein_id AT1G23380.1p  transcript_id AT1G23380.1  
At1g23380	chr1:008302172	0.0	C/8302172-8302492,8301905-8302033,8301665-8301803,8297747-8297988,8297499-8297657	AT1G23380.2  CDS  gene_syn F26F24.32, F26F24_32, KNAT6, KNAT6L, KNAT6S  gene KNAT6  function homeodomain transcription factor KNAT6, belonging to class I of KN transcription factor family (which also includes KNAT1 and KNAT2). Expression is increased in as and bop1 leaf mutants.  go_component nucleus|GO:0005634||IEA  go_process meristem maintenance|GO:0010073|16798887|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|11311158|ISS  product KNAT6; DNA binding / transcription activator/ transcription factor  note KNAT6; FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: meristem maintenance; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: KNOX2 (InterPro:IPR005541), ELK (InterPro:IPR005539), Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), KNOX1 (InterPro:IPR005540), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2); transcription factor (TAIR:AT1G70510.1); Has 5089 Blast hits to 5089 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 1461; Fungi - 168; Plants - 3376; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT1G23380.2p  transcript_id AT1G23380.2  protein_id AT1G23380.2p  transcript_id AT1G23380.2  
At1g23390	chr1:008309449	0.0	C/8309449-8310633	AT1G23390.1  CDS  gene_syn F26F24.26, F26F24_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G24760.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G23390.1p  transcript_id AT1G23390.1  protein_id AT1G23390.1p  transcript_id AT1G23390.1  
At1g23400	chr1:008314068	0.0	C/8314068-8314740,8313863-8313990,8313447-8313672,8313170-8313297,8312751-8312895,8312199-8312593	AT1G23400.1  CDS  gene_syn ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, ATCAF2, CAF2, F26F24.27, F26F24_27  gene CAF2  function Promotes the splicing of chloroplast group II introns.  go_component chloroplast|GO:0009507||IEA  go_process Group II intron splicing|GO:0000373|17071648|IDA  go_function RNA splicing factor activity, transesterification mechanism|GO:0031202|17071648|IDA  product CAF2; RNA splicing factor, transesterification mechanism  note CAF2; FUNCTIONS IN: RNA splicing factor activity, transesterification mechanism; INVOLVED IN: Group II intron splicing; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: CAF1; RNA splicing factor, transesterification mechanism (TAIR:AT2G20020.1); Has 172 Blast hits to 146 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 167; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G23400.1p  transcript_id AT1G23400.1  protein_id AT1G23400.1p  transcript_id AT1G23400.1  
At1g23410	chr1:008314940	0.0	W/8314940-8315410	AT1G23410.1  CDS  gene_syn F26F24.28, F26F24_28  go_component plasma membrane|GO:0005886|17317660|IDA  go_process translation|GO:0006412||IEA  go_process protein modification process|GO:0006464||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process protein ubiquitination during ubiquitin-dependent protein catabolic process|GO:0042787||ISS  go_function protein binding|GO:0005515||ISS  product ubiquitin extension protein, putative / 40S ribosomal protein S27A (RPS27aA)  note ubiquitin extension protein, putative / 40S ribosomal protein S27A (RPS27aA); FUNCTIONS IN: protein binding, structural constituent of ribosome; INVOLVED IN: protein ubiquitination during ubiquitin-dependent protein catabolic process, protein modification process, translation; LOCATED IN: cytosolic small ribosomal subunit, plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S27a (InterPro:IPR002906), Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: UBQ5 (ubiquitin 5); protein binding / structural constituent of ribosome (TAIR:AT3G62250.1); Has 9337 Blast hits to 5597 proteins in 658 species: Archae - 84; Bacteria - 7; Metazoa - 4226; Fungi - 946; Plants - 1978; Viruses - 174; Other Eukaryotes - 1922 (source: NCBI BLink).  protein_id AT1G23410.1p  transcript_id AT1G23410.1  protein_id AT1G23410.1p  transcript_id AT1G23410.1  
At1g23420	chr1:008317423	0.0	W/8317423-8317524,8317622-8317759,8317861-8318011,8318105-8318153,8318273-8318348,8318485-8318583,8319024-8319104	AT1G23420.1  CDS  gene_syn F26F24.29, F26F24_29, INNER NO OUTER, INO  gene INO  function Essential for formation and asymmetric growth of the ovule outer integument. Member of the YABBY protein family of putative transcription factors that contain apparent Cys(2)-Cys(2) zinc-finger domains and regions of similarity to the high mobility group (HMG) transcription factors. INO may be required for polarity determination in the central part of the ovule.  go_component nucleus|GO:0005634|12183380|IDA  go_process polarity specification of adaxial/abaxial axis|GO:0009944|12183380|IDA  go_process ovule development|GO:0048481|12183380|IMP  go_function transcription factor activity|GO:0003700|10601041|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein binding|GO:0005515|15299139|IPI  product INO (INNER NO OUTER); protein binding / transcription factor  note INNER NO OUTER (INO); FUNCTIONS IN: protein binding, transcription factor activity; INVOLVED IN: ovule development, polarity specification of adaxial/abaxial axis; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: YAB2 (YABBY2); transcription factor (TAIR:AT1G08465.1); Has 344 Blast hits to 337 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 325; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G23420.1p  transcript_id AT1G23420.1  protein_id AT1G23420.1p  transcript_id AT1G23420.1  
At1g23440	chr1:008321940	0.0	W/8321940-8322200,8323451-8323555,8323659-8323706,8323780-8324019	AT1G23440.1  CDS  gene_syn F28C11.26, F28C11_26  go_process proteolysis|GO:0006508||IEA  go_component cellular_component|GO:0005575||ND  go_process proteolysis|GO:0006508||ISS  go_function peptidase activity|GO:0008233||ISS  product pyrrolidone-carboxylate peptidase family protein  note pyrrolidone-carboxylate peptidase family protein; FUNCTIONS IN: peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C15, pyroglutamyl peptidase I (InterPro:IPR000816), Peptidase C15, pyroglutamyl peptidase I-like (InterPro:IPR016125); BEST Arabidopsis thaliana protein match is: pyrrolidone-carboxylate peptidase family protein (TAIR:AT1G56700.2); Has 814 Blast hits to 813 proteins in 329 species: Archae - 74; Bacteria - 564; Metazoa - 31; Fungi - 14; Plants - 59; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT1G23440.1p  transcript_id AT1G23440.1  protein_id AT1G23440.1p  transcript_id AT1G23440.1  
At1g23440	chr1:008321940	0.0	W/8321940-8322224	AT1G23440.2  CDS  gene_syn F28C11.26, F28C11_26  go_component cellular_component|GO:0005575||ND  go_process proteolysis|GO:0006508||ISS  go_function peptidase activity|GO:0008233||ISS  product pyrrolidone-carboxylate peptidase family protein  note pyrrolidone-carboxylate peptidase family protein; FUNCTIONS IN: peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C15, pyroglutamyl peptidase I-like (InterPro:IPR016125); BEST Arabidopsis thaliana protein match is: pyrrolidone-carboxylate peptidase family protein (TAIR:AT1G56700.2); Has 56 Blast hits to 56 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23440.2p  transcript_id AT1G23440.2  protein_id AT1G23440.2p  transcript_id AT1G23440.2  
At1g23450	chr1:008324698	0.0	W/8324698-8326697	AT1G23450.1  CDS  gene_syn F28C11.30, F28C11_30  function pentatricopeptide (PPR) repeat-containing protein  go_component mitochondrion|GO:0005739||IEA  product unknown protein  note LOCATED IN: mitochondrion; EXPRESSED IN: pedicel, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G74600.1).  protein_id AT1G23450.1p  transcript_id AT1G23450.1  protein_id AT1G23450.1p  transcript_id AT1G23450.1  
At1g23460	chr1:008327382	0.0	W/8327382-8327633,8327844-8327972,8328066-8328236,8328337-8328357,8328457-8328664,8328756-8328837,8328906-8329014,8329108-8329224,8329329-8329622	AT1G23460.1  CDS  gene_syn F28C11.9  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product polygalacturonase  note polygalacturonase; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Parallel beta-helix repeat (InterPro:IPR006626), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: polygalacturonase, putative / pectinase, putative (TAIR:AT1G70500.1); Has 2595 Blast hits to 2585 proteins in 348 species: Archae - 2; Bacteria - 471; Metazoa - 8; Fungi - 1135; Plants - 896; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT1G23460.1p  transcript_id AT1G23460.1  protein_id AT1G23460.1p  transcript_id AT1G23460.1  
At1g23465	chr1:008330055	0.0	W/8330055-8330180,8330256-8330480,8330822-8330938	AT1G23465.1  CDS  go_component membrane|GO:0016020||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type peptidase activity|GO:0008236||IEA  product signal peptidase-related  note signal peptidase-related; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Peptidase S24, S26A and S26B, C-terminal (InterPro:IPR011056), Peptidase S24, S26A, S26B and S26C (InterPro:IPR015927), Peptidase S26A, signal peptidase I (InterPro:IPR000223), Peptidase S26A (InterPro:IPR014037); BEST Arabidopsis thaliana protein match is: peptidase/ serine-type peptidase (TAIR:AT1G29960.1); Has 2496 Blast hits to 2493 proteins in 740 species: Archae - 0; Bacteria - 1622; Metazoa - 213; Fungi - 148; Plants - 138; Viruses - 0; Other Eukaryotes - 375 (source: NCBI BLink).  protein_id AT1G23465.1p  transcript_id AT1G23465.1  protein_id AT1G23465.1p  transcript_id AT1G23465.1  
At1g23470	chr1:008331297	0.0	W/8331297-8332136	AT1G23470.1  pseudogenic_transcript  pseudo  gene_syn F28C11.10  note pseudogene, polygalacturonase (pectinase), putative, similar to polygalacturonase (Cucumis sativus) GI:6624205; contains Pfam profiles PF00461: Signal peptidase I, PF00295: Polygalacturonase (pectinase); blastp match of 69% identity and 4.8e-49 P-value to GP|6624205|dbj|BAA88472.1||AB035890 polygalacturonase {Cucumis sativus}  
At1g23480	chr1:008333917	0.0	W/8333917-8333982,8334082-8334414,8334511-8334609,8334720-8334972,8335056-8335303,8335388-8335701,8335788-8335982,8336068-8336230	AT1G23480.1  CDS  gene_syn ATCSLA03, ATCSLA3, CELLULOSE SYNTHASE-LIKE A3, CSLA03, F28C11.11  gene ATCSLA03  function encodes a gene similar to cellulose synthase  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  product ATCSLA03 (CELLULOSE SYNTHASE-LIKE A3); cellulose synthase/ transferase, transferring glycosyl groups  note CELLULOSE SYNTHASE-LIKE A3 (ATCSLA03); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: ATCSLA15; cellulose synthase/ transferase, transferring glycosyl groups (TAIR:AT4G13410.1); Has 2808 Blast hits to 2804 proteins in 774 species: Archae - 104; Bacteria - 2035; Metazoa - 9; Fungi - 71; Plants - 311; Viruses - 11; Other Eukaryotes - 267 (source: NCBI BLink).  protein_id AT1G23480.1p  transcript_id AT1G23480.1  protein_id AT1G23480.1p  transcript_id AT1G23480.1  
At1g23480	chr1:008333917	0.0	W/8333917-8333982,8334082-8334414,8334511-8334609,8334720-8334972,8335056-8335303,8335388-8335701,8335788-8335982,8336068-8336230	AT1G23480.2  CDS  gene_syn ATCSLA03, ATCSLA3, CELLULOSE SYNTHASE-LIKE A3, CSLA03, F28C11.11  gene ATCSLA03  function encodes a gene similar to cellulose synthase  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  product ATCSLA03 (CELLULOSE SYNTHASE-LIKE A3); cellulose synthase/ transferase, transferring glycosyl groups  note CELLULOSE SYNTHASE-LIKE A3 (ATCSLA03); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: ATCSLA15; cellulose synthase/ transferase, transferring glycosyl groups (TAIR:AT4G13410.1); Has 2808 Blast hits to 2804 proteins in 774 species: Archae - 104; Bacteria - 2035; Metazoa - 9; Fungi - 71; Plants - 311; Viruses - 11; Other Eukaryotes - 267 (source: NCBI BLink).  protein_id AT1G23480.2p  transcript_id AT1G23480.2  protein_id AT1G23480.2p  transcript_id AT1G23480.2  
At1g23480	chr1:008334232	0.0	W/8334232-8334414,8334511-8334609,8334720-8334972,8335056-8335303,8335388-8335701,8335788-8335982,8336068-8336230	AT1G23480.3  CDS  gene_syn ATCSLA03, ATCSLA3, CELLULOSE SYNTHASE-LIKE A3, CSLA03, F28C11.11  gene ATCSLA03  function encodes a gene similar to cellulose synthase  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  product ATCSLA03 (CELLULOSE SYNTHASE-LIKE A3); cellulose synthase/ transferase, transferring glycosyl groups  note CELLULOSE SYNTHASE-LIKE A3 (ATCSLA03); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: ATCSLA15; cellulose synthase/ transferase, transferring glycosyl groups (TAIR:AT4G13410.1); Has 2795 Blast hits to 2791 proteins in 772 species: Archae - 102; Bacteria - 2024; Metazoa - 9; Fungi - 71; Plants - 311; Viruses - 11; Other Eukaryotes - 267 (source: NCBI BLink).  protein_id AT1G23480.3p  transcript_id AT1G23480.3  protein_id AT1G23480.3p  transcript_id AT1G23480.3  
At1g23490	chr1:008337232	0.0	W/8337232-8337379,8337509-8337579,8337733-8337852,8337940-8338058,8338192-8338273,8338368-8338373	AT1G23490.1  CDS  gene_syn ADP-RIBOSYLATION FACTOR, ADP-RIBOSYLATION FACTOR 1, ADP-RIBOSYLATION FACTOR 1A, ATARF, ATARF1, ATARFA1A, F28C11.12  gene ATARF1  function Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. A member of ARF GTPase family. Arabidopsis has 21 known members, known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.  go_component intracellular|GO:0005622||IEA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function protein binding|GO:0005515|15723828|TAS  go_function protein binding|GO:0005515|17307898|IPI  go_function GTP binding|GO:0005525|15723828|ISS  go_function GTP binding|GO:0005525|15723828|TAS  go_function phospholipase activator activity|GO:0016004|15723828|TAS  product ATARF1 (ADP-RIBOSYLATION FACTOR 1); GTP binding / phospholipase activator/ protein binding  note ADP-RIBOSYLATION FACTOR 1 (ATARF1); FUNCTIONS IN: protein binding, phospholipase activator activity, GTP binding; INVOLVED IN: response to cadmium ion, N-terminal protein myristoylation; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ARFA1D; GTP binding / phospholipase activator/ protein binding (TAIR:AT1G70490.3); Has 12057 Blast hits to 12040 proteins in 421 species: Archae - 12; Bacteria - 44; Metazoa - 6621; Fungi - 1335; Plants - 1253; Viruses - 3; Other Eukaryotes - 2789 (source: NCBI BLink).  protein_id AT1G23490.1p  transcript_id AT1G23490.1  protein_id AT1G23490.1p  transcript_id AT1G23490.1  
At1g23500	chr1:008339668	0.0	W/8339668-8339926,8340038-8340168,8340253-8340480,8340571-8340826,8340909-8341072	AT1G23500.1  CDS  gene_syn F28C11.13  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function lipase activity|GO:0016298||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298||ISS  product GDSL-motif lipase, putative  note GDSL-motif lipase, putative; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT1G73610.1); Has 1789 Blast hits to 1771 proteins in 154 species: Archae - 0; Bacteria - 218; Metazoa - 1; Fungi - 17; Plants - 1535; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G23500.1p  transcript_id AT1G23500.1  protein_id AT1G23500.1p  transcript_id AT1G23500.1  
At1g23510	chr1:008342348	0.0	C/8342348-8342422,8342077-8342223,8341840-8341986,8341449-8341694	AT1G23510.2  CDS  gene_syn F28C11.14, F28C11_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23520.1); Has 84 Blast hits to 74 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23510.2p  transcript_id AT1G23510.2  protein_id AT1G23510.2p  transcript_id AT1G23510.2  
At1g23510	chr1:008342584	0.0	C/8342584-8342646,8342348-8342497,8342077-8342223,8341840-8341986,8341449-8341694	AT1G23510.1  CDS  gene_syn F28C11.14, F28C11_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23520.1); Has 88 Blast hits to 76 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23510.1p  transcript_id AT1G23510.1  protein_id AT1G23510.1p  transcript_id AT1G23510.1  
At1g23520	chr1:008344616	0.0	C/8344616-8344675,8344218-8344496,8343975-8344118,8343571-8343879	AT1G23520.1  CDS  gene_syn F28C11.15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23600.1); Has 92 Blast hits to 82 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23520.1p  transcript_id AT1G23520.1  protein_id AT1G23520.1p  transcript_id AT1G23520.1  
At1g23530	chr1:008345861	0.0	W/8345861-8346430	AT1G23530.1  CDS  gene_syn F28C11.16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70470.1); Has 25 Blast hits to 25 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G23530.1p  transcript_id AT1G23530.1  protein_id AT1G23530.1p  transcript_id AT1G23530.1  
At1g23540	chr1:008348907	0.0	C/8348907-8349786,8348331-8348822,8348162-8348248,8347993-8348063,8347827-8347903,8347525-8347672,8347278-8347439,8346942-8347187	AT1G23540.1  CDS  gene_syn F28C11.17  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT1G70460.1); Has 307341 Blast hits to 169109 proteins in 4549 species: Archae - 575; Bacteria - 44733; Metazoa - 131565; Fungi - 41312; Plants - 37348; Viruses - 6478; Other Eukaryotes - 45330 (source: NCBI BLink).  protein_id AT1G23540.1p  transcript_id AT1G23540.1  protein_id AT1G23540.1p  transcript_id AT1G23540.1  
At1g23550	chr1:008350912	0.0	W/8350912-8351399,8351579-8351817,8351901-8352031,8352119-8352232	AT1G23550.1  CDS  gene_syn F28C11.18, SIMILAR TO RCD ONE 2, SRO2  gene SRO2  function Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation.  go_component nucleus|GO:0005634||IEA  go_function NAD+ ADP-ribosyltransferase activity|GO:0003950||IEA  go_process biological_process|GO:0008150||ND  product SRO2 (SIMILAR TO RCD ONE 2); NAD+ ADP-ribosyltransferase  note SIMILAR TO RCD ONE 2 (SRO2); FUNCTIONS IN: NAD+ ADP-ribosyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Poly(ADP-ribose) polymerase, catalytic region (InterPro:IPR012317); BEST Arabidopsis thaliana protein match is: SRO3 (SIMILAR TO RCD ONE 3); NAD+ ADP-ribosyltransferase (TAIR:AT1G70440.1); Has 113 Blast hits to 109 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G23550.1p  transcript_id AT1G23550.1  protein_id AT1G23550.1p  transcript_id AT1G23550.1  
At1g23560	chr1:008354017	0.0	C/8354017-8354145,8353763-8353924,8353552-8353674,8353325-8353468,8352802-8353242	AT1G23560.1  CDS  gene_syn F28C11.32  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70480.2); Has 96 Blast hits to 86 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23560.1p  transcript_id AT1G23560.1  protein_id AT1G23560.1p  transcript_id AT1G23560.1  
At1g23570	chr1:008355589	0.0	C/8355589-8355738,8355081-8355491	AT1G23570.3  CDS  gene_syn F28C11.33  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23580.1); Has 85 Blast hits to 75 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23570.3p  transcript_id AT1G23570.3  protein_id AT1G23570.3p  transcript_id AT1G23570.3  
At1g23570	chr1:008356308	0.0	C/8356308-8356364,8356053-8356232,8355589-8355732,8355081-8355491	AT1G23570.2  CDS  gene_syn F28C11.33  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23580.1); Has 112 Blast hits to 99 proteins in 17 species: Archae - 0; Bacteria - 21; Metazoa - 2; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23570.2p  transcript_id AT1G23570.2  protein_id AT1G23570.2p  transcript_id AT1G23570.2  
At1g23570	chr1:008356308	0.0	C/8356308-8356364,8356059-8356232,8355589-8355732,8355081-8355491	AT1G23570.1  CDS  gene_syn F28C11.33  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23580.1); Has 90 Blast hits to 76 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23570.1p  transcript_id AT1G23570.1  protein_id AT1G23570.1p  transcript_id AT1G23570.1  
At1g23580	chr1:008358647	0.0	C/8358647-8358706,8358401-8358571,8358178-8358297,8357949-8358092,8357491-8357853	AT1G23580.1  CDS  gene_syn F28C11.28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23600.1); Has 88 Blast hits to 76 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23580.1p  transcript_id AT1G23580.1  protein_id AT1G23580.1p  transcript_id AT1G23580.1  
At1g23590	chr1:008360221	0.0	C/8360221-8360322,8359984-8360118,8359740-8359883,8359440-8359646	AT1G23590.2  CDS  gene_syn F28C11.29  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, sepal, flower, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23600.1); Has 86 Blast hits to 76 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23590.2p  transcript_id AT1G23590.2  protein_id AT1G23590.2p  transcript_id AT1G23590.2  
At1g23590	chr1:008360504	0.0	C/8360504-8360521,8360221-8360370,8359984-8360118,8359740-8359883,8359440-8359646	AT1G23590.1  CDS  gene_syn F28C11.29  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, sepal, flower, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23600.1); Has 86 Blast hits to 76 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23590.1p  transcript_id AT1G23590.1  protein_id AT1G23590.1p  transcript_id AT1G23590.1  
At1g23600	chr1:008362299	0.0	C/8362299-8362358,8362072-8362224,8361608-8361751,8361198-8361515	AT1G23600.2  CDS  gene_syn F28C11.31  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, sepal, flower, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23690.2); Has 88 Blast hits to 76 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23600.2p  transcript_id AT1G23600.2  protein_id AT1G23600.2p  transcript_id AT1G23600.2  
At1g23600	chr1:008362299	0.0	C/8362299-8362358,8362072-8362224,8361832-8361969,8361608-8361751,8361198-8361515	AT1G23600.1  CDS  gene_syn F28C11.31  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, sepal, flower, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23690.1); Has 94 Blast hits to 82 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23600.1p  transcript_id AT1G23600.1  protein_id AT1G23600.1p  transcript_id AT1G23600.1  
At1g23610	chr1:008363047	0.0	C/8363047-8363235	AT1G23610.1  CDS  gene_syn F28C11.24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23640.1); Has 77 Blast hits to 67 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23610.1p  transcript_id AT1G23610.1  protein_id AT1G23610.1p  transcript_id AT1G23610.1  
At1g23620	chr1:008364662	0.0	C/8364662-8366449	AT1G23620.1  pseudogenic_transcript  pseudo  gene_syn F28C11.21  note pseudogene, hypothetical protein  
At1g23640	chr1:008370221	0.0	C/8370221-8370280,8369981-8370148,8369547-8369690,8369342-8369422,8368480-8368523,8368279-8368321,8368063-8368206,8367804-8367941,8367578-8367721,8367170-8367478	AT1G23640.1  CDS  gene_syn F28C11.27  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23660.1).  protein_id AT1G23640.1p  transcript_id AT1G23640.1  protein_id AT1G23640.1p  transcript_id AT1G23640.1  
At1g23650	chr1:008371020	0.0	C/8371020-8371106	AT1G23650.1  CDS  gene_syn F5O8.41, F5O8_41  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23650.1p  transcript_id AT1G23650.1  protein_id AT1G23650.1p  transcript_id AT1G23650.1  
At1g23660	chr1:008372713	0.0	C/8372713-8372772,8372497-8372640,8372244-8372381,8372008-8372151,8371609-8371917	AT1G23660.1  CDS  gene_syn F28C11.23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23640.1); Has 96 Blast hits to 84 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23660.1p  transcript_id AT1G23660.1  protein_id AT1G23660.1p  transcript_id AT1G23660.1  
At1g23670	chr1:008375757	0.0	C/8375757-8375807,8375530-8375676,8373834-8373980,8373407-8373721	AT1G23670.1  CDS  gene_syn F28C11.25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23600.2); Has 87 Blast hits to 74 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23670.1p  transcript_id AT1G23670.1  protein_id AT1G23670.1p  transcript_id AT1G23670.1  
At1g23670	chr1:008375757	0.0	C/8375757-8375807,8375530-8375676,8374068-8374202,8373834-8373980,8373407-8373721	AT1G23670.2  CDS  gene_syn F28C11.25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23520.1); Has 92 Blast hits to 80 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23670.2p  transcript_id AT1G23670.2  protein_id AT1G23670.2p  transcript_id AT1G23670.2  
At1g23680	chr1:008377136	0.0	C/8377136-8377156,8376959-8377094,8376687-8376928	AT1G23680.1  CDS  gene_syn F5O8.23, F5O8_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); Has 55 Blast hits to 47 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23680.1p  transcript_id AT1G23680.1  protein_id AT1G23680.1p  transcript_id AT1G23680.1  
At1g23690	chr1:008378572	0.0	C/8378572-8378634,8378301-8378465,8378066-8378191,8377836-8377979,8377433-8377741	AT1G23690.2  CDS  gene_syn F5O8.24, F5O8_24  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23600.1); Has 88 Blast hits to 76 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23690.2p  transcript_id AT1G23690.2  protein_id AT1G23690.2p  transcript_id AT1G23690.2  
At1g23690	chr1:008378572	0.0	C/8378572-8378634,8378301-8378465,8378066-8378206,8377836-8377979,8377433-8377741	AT1G23690.1  CDS  gene_syn F5O8.24, F5O8_24  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23600.1); Has 88 Blast hits to 76 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23690.1p  transcript_id AT1G23690.1  protein_id AT1G23690.1p  transcript_id AT1G23690.1  
At1g23700	chr1:008381810	0.0	C/8381810-8381965,8381464-8381718,8381252-8381382,8381120-8381167,8380967-8381030,8380801-8380866,8380548-8380718,8380411-8380467,8380110-8380226,8379871-8379987,8379617-8379777,8379454-8379532	AT1G23700.1  CDS  gene_syn F5O8.25, F5O8_25  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, LP.02 two leaves visible, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G70430.1); Has 75703 Blast hits to 74945 proteins in 1795 species: Archae - 37; Bacteria - 5942; Metazoa - 33766; Fungi - 7000; Plants - 14479; Viruses - 369; Other Eukaryotes - 14110 (source: NCBI BLink).  protein_id AT1G23700.1p  transcript_id AT1G23700.1  protein_id AT1G23700.1p  transcript_id AT1G23700.1  
At1g23710	chr1:008385363	0.0	W/8385363-8386250	AT1G23710.1  CDS  gene_syn F5O8.26, F5O8_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1645 (InterPro:IPR012442); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70420.1); Has 203 Blast hits to 197 proteins in 42 species: Archae - 0; Bacteria - 4; Metazoa - 16; Fungi - 9; Plants - 112; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT1G23710.1p  transcript_id AT1G23710.1  protein_id AT1G23710.1p  transcript_id AT1G23710.1  
At1g23720	chr1:008388655	0.0	W/8388655-8391342	AT1G23720.1  CDS  gene_syn F5O8.27, F5O8_27  go_process plant-type cell wall organization|GO:0009664||IEA  go_function structural constituent of cell wall|GO:0005199||IEA  product proline-rich extensin-like family protein  note proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; EXPRESSED IN: hypocotyl, root, carpel; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Extensin-like region (InterPro:IPR006706); Has 465068 Blast hits to 49018 proteins in 1571 species: Archae - 1162; Bacteria - 72867; Metazoa - 181494; Fungi - 68678; Plants - 63971; Viruses - 12154; Other Eukaryotes - 64742 (source: NCBI BLink).  protein_id AT1G23720.1p  transcript_id AT1G23720.1  protein_id AT1G23720.1p  transcript_id AT1G23720.1  
At1g23724	chr1:008393187	0.0	W/8393187-8393330	AT1G23724.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G23724.1p  transcript_id AT1G23724.1  protein_id AT1G23724.1p  transcript_id AT1G23724.1  
At1g23730	chr1:008395965	0.0	W/8395965-8396017,8396266-8396406,8396679-8396727,8396965-8397081,8397197-8397250,8397466-8397554,8397642-8397747,8397847-8398014	AT1G23730.1  CDS  gene_syn ATBCA3, BCA3, BETA CARBONIC ANHYDRASE 3, BETA CARBONIC ANHYDRASE 4, F5O8.28, F5O8_28  gene BCA3  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process carbon utilization|GO:0015976||IEA  go_function carbonate dehydratase activity|GO:0004089||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cytosol|GO:0005829|17407539|IDA  go_process carbon utilization|GO:0015976||ISS  go_function carbonate dehydratase activity|GO:0004089||ISS  go_function zinc ion binding|GO:0008270||ISS  product BCA3 (BETA CARBONIC ANHYDRASE 4); carbonate dehydratase/ zinc ion binding  note BETA CARBONIC ANHYDRASE 4 (BCA3); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: carbon utilization; LOCATED IN: cytosol, plasma membrane, membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: carbonic anhydrase, putative / carbonate dehydratase, putative (TAIR:AT1G70410.3); Has 3237 Blast hits to 3225 proteins in 947 species: Archae - 18; Bacteria - 2303; Metazoa - 48; Fungi - 142; Plants - 233; Viruses - 0; Other Eukaryotes - 493 (source: NCBI BLink).  protein_id AT1G23730.1p  transcript_id AT1G23730.1  protein_id AT1G23730.1p  transcript_id AT1G23730.1  
At1g23740	chr1:008399246	0.0	C/8399246-8399656,8398839-8399162,8398600-8398759,8398245-8398510	AT1G23740.1  CDS  gene_syn F5O8.29, F5O8_29  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component stromule|GO:0010319|16923014|IDA  go_process response to cold|GO:0009409|16923014|IEP  go_function zinc ion binding|GO:0008270||ISS  product oxidoreductase, zinc-binding dehydrogenase family protein  note oxidoreductase, zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: response to cold; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Quinone oxidoreductase/zeta-crystallin, conserved site (InterPro:IPR002364), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: oxidoreductase, zinc-binding dehydrogenase family protein (TAIR:AT4G13010.1); Has 25735 Blast hits to 25635 proteins in 1642 species: Archae - 321; Bacteria - 14032; Metazoa - 1331; Fungi - 2499; Plants - 781; Viruses - 3; Other Eukaryotes - 6768 (source: NCBI BLink).  protein_id AT1G23740.1p  transcript_id AT1G23740.1  protein_id AT1G23740.1p  transcript_id AT1G23740.1  
At1g23750	chr1:008400638	0.0	W/8400638-8400863,8400984-8401171	AT1G23750.1  CDS  gene_syn F5O8.30, F5O8_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product DNA-binding protein-related  note DNA-binding protein-related; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340); BEST Arabidopsis thaliana protein match is: DNA-binding protein-related (TAIR:AT1G10590.3); Has 136 Blast hits to 136 proteins in 34 species: Archae - 26; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G23750.1p  transcript_id AT1G23750.1  protein_id AT1G23750.1p  transcript_id AT1G23750.1  
At1g23760	chr1:008402142	0.0	W/8402142-8402192,8402330-8404147	AT1G23760.1  CDS  gene_syn F5O8.31, F5O8_31, JP630  gene JP630  function Encodes aromatic rich glycoprotein JP630.  go_process biological_process|GO:0008150||ND  go_function polygalacturonase activity|GO:0004650||ISS  product JP630; polygalacturonase  note JP630; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: BURP (InterPro:IPR004873); BEST Arabidopsis thaliana protein match is: BURP domain-containing protein / polygalacturonase, putative (TAIR:AT1G70370.1); Has 1549 Blast hits to 1137 proteins in 200 species: Archae - 0; Bacteria - 267; Metazoa - 411; Fungi - 174; Plants - 320; Viruses - 2; Other Eukaryotes - 375 (source: NCBI BLink).  protein_id AT1G23760.1p  transcript_id AT1G23760.1  protein_id AT1G23760.1p  transcript_id AT1G23760.1  
At1g23770	chr1:008405214	0.0	C/8405214-8406266	AT1G23770.1  CDS  gene_syn F5O8.32, F5O8_32  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G23780.1); Has 160 Blast hits to 160 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G23770.1p  transcript_id AT1G23770.1  protein_id AT1G23770.1p  transcript_id AT1G23770.1  
At1g23780	chr1:008407053	0.0	C/8407053-8408480	AT1G23780.1  CDS  gene_syn F5O8.33, F5O8_33  product F-box family protein  note F-box family protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G23770.1); Has 177 Blast hits to 177 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 120; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G23780.1p  transcript_id AT1G23780.1  protein_id AT1G23780.1p  transcript_id AT1G23780.1  
At1g23790	chr1:008410099	0.0	W/8410099-8410830,8410906-8411073,8411165-8411256,8411353-8411917	AT1G23790.1  CDS  gene_syn F5O8.34, F5O8_34  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF936, plant (InterPro:IPR010341); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70340.1); Has 135 Blast hits to 108 proteins in 21 species: Archae - 0; Bacteria - 5; Metazoa - 7; Fungi - 6; Plants - 113; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G23790.1p  transcript_id AT1G23790.1  protein_id AT1G23790.1p  transcript_id AT1G23790.1  
At1g23800	chr1:008414729	0.0	C/8414729-8414804,8414387-8414512,8414171-8414313,8413933-8414086,8413608-8413837,8413440-8413529,8413175-8413348,8412964-8413101,8412734-8412871,8412598-8412659,8412238-8412511	AT1G23800.1  CDS  gene_syn ALDH2B, ALDH2B7, F5O8.35, F5O8_35  gene ALDH2B7  function Encodes a mitochondrial aldehyde dehydrogenase; nuclear gene for mitochondrial product.  go_component mitochondrion|GO:0005739||IEA  go_process metabolic process|GO:0008152||IEA  go_function 3-chloroallyl aldehyde dehydrogenase activity|GO:0004028||ISS  go_function aldehyde dehydrogenase (NAD) activity|GO:0004029|11999848|ISS  product ALDH2B7; 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD)  note ALDH2B7; FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, aldehyde dehydrogenase (NAD) activity; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.10 ten leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: ALDH2B4 (ALDEHYDE DEHYDROGENASE 2B4); 3-chloroallyl aldehyde dehydrogenase/ ATP binding / aldehyde dehydrogenase (NAD) (TAIR:AT3G48000.1); Has 43385 Blast hits to 43091 proteins in 1797 species: Archae - 241; Bacteria - 19465; Metazoa - 2305; Fungi - 1320; Plants - 615; Viruses - 0; Other Eukaryotes - 19439 (source: NCBI BLink).  protein_id AT1G23800.1p  transcript_id AT1G23800.1  protein_id AT1G23800.1p  transcript_id AT1G23800.1  
At1g23810	chr1:008417495	0.0	W/8417495-8417637,8417720-8418001,8418103-8418220,8418301-8418402,8418486-8418566	AT1G23810.1  CDS  gene_syn F5O8.36, F5O8_36  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function molecular_function|GO:0003674||ND  product paired amphipathic helix repeat-containing protein  note paired amphipathic helix repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: paired amphipathic helix repeat-containing protein (TAIR:AT1G24250.1); Has 537 Blast hits to 378 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 264; Fungi - 97; Plants - 161; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G23810.1p  transcript_id AT1G23810.1  protein_id AT1G23810.1p  transcript_id AT1G23810.1  
At1g23820	chr1:008420278	0.0	W/8420278-8420578,8420672-8420748,8420840-8420962,8421618-8421722,8421819-8421891,8421991-8422062,8422168-8422363,8422448-8422571,8422659-8422724	AT1G23820.1  CDS  gene_syn F5O8.38, F5O8_38, SPDS1, spermidine synthase 1  gene SPDS1  function Spermidine synthase.  go_component cellular_component|GO:0005575||ND  go_process spermidine biosynthetic process|GO:0008295|12220656|IDA  go_function spermidine synthase activity|GO:0004766|12220656|IDA  product SPDS1 (spermidine synthase 1); spermidine synthase  note spermidine synthase 1 (SPDS1); FUNCTIONS IN: spermidine synthase activity; INVOLVED IN: spermidine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: SPDS2 (spermidine synthase 2); spermidine synthase (TAIR:AT1G70310.1); Has 3682 Blast hits to 3680 proteins in 919 species: Archae - 109; Bacteria - 1664; Metazoa - 308; Fungi - 127; Plants - 317; Viruses - 0; Other Eukaryotes - 1157 (source: NCBI BLink).  protein_id AT1G23820.1p  transcript_id AT1G23820.1  protein_id AT1G23820.1p  transcript_id AT1G23820.1  
At1g23820	chr1:008420278	0.0	W/8420278-8420578,8420672-8420748,8420840-8420962,8421618-8421722,8421819-8421891,8421991-8422062,8422168-8422367,8422448-8422480	AT1G23820.2  CDS  gene_syn F5O8.38, F5O8_38, SPDS1, spermidine synthase 1  gene SPDS1  function Spermidine synthase.  go_component cellular_component|GO:0005575||ND  go_process spermidine biosynthetic process|GO:0008295|12220656|IDA  go_function spermidine synthase activity|GO:0004766|12220656|IDA  product SPDS1 (spermidine synthase 1); spermidine synthase  note spermidine synthase 1 (SPDS1); FUNCTIONS IN: spermidine synthase activity; INVOLVED IN: spermidine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: SPDS2 (spermidine synthase 2); spermidine synthase (TAIR:AT1G70310.1); Has 3662 Blast hits to 3662 proteins in 917 species: Archae - 109; Bacteria - 1655; Metazoa - 305; Fungi - 127; Plants - 315; Viruses - 0; Other Eukaryotes - 1151 (source: NCBI BLink).  protein_id AT1G23820.2p  transcript_id AT1G23820.2  protein_id AT1G23820.2p  transcript_id AT1G23820.2  
At1g23830	chr1:008423003	0.0	C/8423003-8424040	AT1G23830.1  CDS  gene_syn F5O8.39, F5O8_39  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23840.1); Has 33 Blast hits to 30 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23830.1p  transcript_id AT1G23830.1  protein_id AT1G23830.1p  transcript_id AT1G23830.1  
At1g23840	chr1:008424321	0.0	C/8424321-8425337	AT1G23840.1  CDS  gene_syn F5O8.40, F5O8_40  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23830.1); Has 29 Blast hits to 26 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23840.1p  transcript_id AT1G23840.1  protein_id AT1G23840.1p  transcript_id AT1G23840.1  
At1g23850	chr1:008425981	0.0	C/8425981-8427045	AT1G23850.1  CDS  gene_syn T23E23.1, T23E23_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23840.1); Has 23 Blast hits to 20 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23850.1p  transcript_id AT1G23850.1  protein_id AT1G23850.1p  transcript_id AT1G23850.1  
At1g23860	chr1:008429076	0.0	C/8429076-8429164,8428915-8429003,8428605-8428818,8428235-8428330,8428091-8428097	AT1G23860.3  CDS  gene_syn RS-CONTAINING ZINC FINGER PROTEIN 21, RSZP21, SRZ-21, SRZ21, T23E23.2, T23E23_2  gene RSZP21  function Encodes a 9G8-like serine-arginine rich (SR) protein that interacts in vivo with U1-70K, a U1 small nuclear ribonucleoprotein 70-kDa protein that is involved in nuclear precursor mRNA processing.  go_component nucleus|GO:0005634|9761791|IPI  go_component nuclear speck|GO:0016607|15133128|IDA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|10350090|TAS  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|9761791|TAS  go_function protein binding|GO:0005515|9761791|IPI  product RSZP21 (RS-CONTAINING ZINC FINGER PROTEIN 21); protein binding  note SRZ-21; FUNCTIONS IN: protein binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nuclear speck, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: SRZ-22; protein binding (TAIR:AT4G31580.2); Has 3322 Blast hits to 3170 proteins in 257 species: Archae - 0; Bacteria - 136; Metazoa - 1946; Fungi - 225; Plants - 699; Viruses - 6; Other Eukaryotes - 310 (source: NCBI BLink).  protein_id AT1G23860.3p  transcript_id AT1G23860.3  protein_id AT1G23860.3p  transcript_id AT1G23860.3  
At1g23860	chr1:008429076	0.0	C/8429076-8429164,8428915-8429003,8428605-8428818,8428235-8428399,8428091-8428097	AT1G23860.1  CDS  gene_syn RS-CONTAINING ZINC FINGER PROTEIN 21, RSZP21, SRZ-21, SRZ21, T23E23.2, T23E23_2  gene RSZP21  function Encodes a 9G8-like serine-arginine rich (SR) protein that interacts in vivo with U1-70K, a U1 small nuclear ribonucleoprotein 70-kDa protein that is involved in nuclear precursor mRNA processing.  go_component nucleus|GO:0005634|9761791|IPI  go_component nuclear speck|GO:0016607|15133128|IDA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|10350090|TAS  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|9761791|TAS  go_function protein binding|GO:0005515|9761791|IPI  product RSZP21 (RS-CONTAINING ZINC FINGER PROTEIN 21); protein binding  note RS-CONTAINING ZINC FINGER PROTEIN 21 (RSZP21); FUNCTIONS IN: protein binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nuclear speck, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: SRZ-22; protein binding (TAIR:AT4G31580.2); Has 5033 Blast hits to 4348 proteins in 291 species: Archae - 0; Bacteria - 144; Metazoa - 3042; Fungi - 362; Plants - 1002; Viruses - 47; Other Eukaryotes - 436 (source: NCBI BLink).  protein_id AT1G23860.1p  transcript_id AT1G23860.1  protein_id AT1G23860.1p  transcript_id AT1G23860.1  
At1g23860	chr1:008429076	0.0	C/8429076-8429164,8428915-8429003,8428605-8428818,8428235-8428399,8428091-8428097	AT1G23860.2  CDS  gene_syn RS-CONTAINING ZINC FINGER PROTEIN 21, RSZP21, SRZ-21, SRZ21, T23E23.2, T23E23_2  gene RSZP21  function Encodes a 9G8-like serine-arginine rich (SR) protein that interacts in vivo with U1-70K, a U1 small nuclear ribonucleoprotein 70-kDa protein that is involved in nuclear precursor mRNA processing.  go_component nucleus|GO:0005634|9761791|IPI  go_component nuclear speck|GO:0016607|15133128|IDA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|10350090|TAS  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|9761791|TAS  go_function protein binding|GO:0005515|9761791|IPI  product RSZP21 (RS-CONTAINING ZINC FINGER PROTEIN 21); protein binding  note SRZ-21; FUNCTIONS IN: protein binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nuclear speck, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: SRZ-22; protein binding (TAIR:AT4G31580.2); Has 5033 Blast hits to 4348 proteins in 291 species: Archae - 0; Bacteria - 144; Metazoa - 3042; Fungi - 362; Plants - 1002; Viruses - 47; Other Eukaryotes - 436 (source: NCBI BLink).  protein_id AT1G23860.2p  transcript_id AT1G23860.2  protein_id AT1G23860.2p  transcript_id AT1G23860.2  
At1g23870	chr1:008432695	0.0	W/8432695-8434682,8434769-8435042,8435165-8435506	AT1G23870.1  CDS  gene_syn ATTPS9, T23E23.3, T23E23_3, TPS9, TREHALOSE -6-PHOSPHATASE SYNTHASE S9  gene ATTPS9  function Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain.  go_process trehalose biosynthetic process|GO:0005992||IEA  go_process metabolic process|GO:0008152||IEA  go_process trehalose biosynthetic process|GO:0005992||ISS  go_function trehalose-phosphatase activity|GO:0004805||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product ATTPS9; transferase, transferring glycosyl groups / trehalose-phosphatase  note ATTPS9; FUNCTIONS IN: transferase activity, transferring glycosyl groups, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process, metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Glycosyl transferase, family 20 (InterPro:IPR001830), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: ATTPS8; alpha,alpha-trehalose-phosphate synthase (UDP-forming)/ transferase, transferring glycosyl groups / trehalose-phosphatase (TAIR:AT1G70290.1); Has 3147 Blast hits to 3099 proteins in 656 species: Archae - 40; Bacteria - 1667; Metazoa - 205; Fungi - 473; Plants - 358; Viruses - 0; Other Eukaryotes - 404 (source: NCBI BLink).  protein_id AT1G23870.1p  transcript_id AT1G23870.1  protein_id AT1G23870.1p  transcript_id AT1G23870.1  
At1g23880	chr1:008436125	0.0	W/8436125-8436392,8436491-8436577,8436672-8436848,8437238-8437408,8437498-8437710,8437822-8437910,8438004-8438636	AT1G23880.1  CDS  gene_syn T23E23.5, T23E23_5  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NHL repeat-containing protein  note NHL repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NHL repeat (InterPro:IPR001258), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: NHL repeat-containing protein (TAIR:AT1G70280.2); Has 1543 Blast hits to 682 proteins in 117 species: Archae - 74; Bacteria - 770; Metazoa - 76; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 540 (source: NCBI BLink).  protein_id AT1G23880.1p  transcript_id AT1G23880.1  protein_id AT1G23880.1p  transcript_id AT1G23880.1  
At1g23890	chr1:008440749	0.0	C/8440749-8440803,8440494-8440664,8440013-8440177,8439681-8439881,8439498-8439595,8438900-8439412	AT1G23890.2  CDS  gene_syn T23E23.6, T23E23_6  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NHL repeat-containing protein  note NHL repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NHL repeat, subgroup (InterPro:IPR013017), NHL repeat (InterPro:IPR001258), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: NHL repeat-containing protein (TAIR:AT3G14860.2); Has 1921 Blast hits to 831 proteins in 148 species: Archae - 109; Bacteria - 916; Metazoa - 129; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 681 (source: NCBI BLink).  protein_id AT1G23890.2p  transcript_id AT1G23890.2  protein_id AT1G23890.2p  transcript_id AT1G23890.2  
At1g23890	chr1:008440749	0.0	C/8440749-8440803,8440494-8440664,8440013-8440177,8439681-8439881,8439498-8439595,8439321-8439416	AT1G23890.1  CDS  gene_syn T23E23.6, T23E23_6  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NHL repeat-containing protein  note NHL repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NHL repeat, subgroup (InterPro:IPR013017), NHL repeat (InterPro:IPR001258), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: NHL repeat-containing protein (TAIR:AT3G14860.2); Has 1922 Blast hits to 831 proteins in 148 species: Archae - 109; Bacteria - 918; Metazoa - 129; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 680 (source: NCBI BLink).  protein_id AT1G23890.1p  transcript_id AT1G23890.1  protein_id AT1G23890.1p  transcript_id AT1G23890.1  
At1g23900	chr1:008441379	0.0	W/8441379-8441410,8441768-8442070,8442246-8442387,8442486-8442659,8442924-8443103,8443628-8443782,8444017-8444107,8444211-8444374,8444508-8444562,8444715-8444837,8444923-8445018,8445145-8445272,8445519-8445623,8445724-8445986,8446147-8446389,8446479-8446654,8446776-8446880,8447057-8447152	AT1G23900.1  CDS  gene_syn GAMMA-ADAPTIN 1, Gamma-ADR, Gamma-adaptin  gene GAMMA-ADAPTIN 1  function Encodes large subunit of the heterotetrameric adaptor protein complex AP-1. AP-1 is required for clathrin coated vesicles budding from the trans-Golgi network or plasma membrane  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component AP-1 adaptor complex|GO:0030121|10229581|ISS  go_process vesicle-mediated transport|GO:0016192|10229581|ISS  go_function clathrin binding|GO:0030276||ISS  product GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1); binding / clathrin binding / protein binding / protein transporter  note GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1); FUNCTIONS IN: protein transporter activity, protein binding, clathrin binding, binding; INVOLVED IN: vesicle-mediated transport; LOCATED IN: AP-1 adaptor complex; CONTAINS InterPro DOMAIN/s: Adaptor protein complex AP-1, gamma subunit (InterPro:IPR017107), Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain (InterPro:IPR008152), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Clathrin adaptor, gamma-adaptin, appendage (InterPro:IPR008153), Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain (InterPro:IPR013041), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: binding / clathrin binding / protein binding / protein transporter (TAIR:AT1G60070.1); Has 2636 Blast hits to 2548 proteins in 191 species: Archae - 0; Bacteria - 2; Metazoa - 1275; Fungi - 618; Plants - 194; Viruses - 0; Other Eukaryotes - 547 (source: NCBI BLink).  protein_id AT1G23900.1p  transcript_id AT1G23900.1  protein_id AT1G23900.1p  transcript_id AT1G23900.1  
At1g23900	chr1:008441379	0.0	W/8441379-8441410,8441768-8442070,8442246-8442387,8442486-8442659,8442924-8443103,8443628-8443782,8444017-8444107,8444211-8444374,8444508-8444562,8444715-8444837,8444923-8445018,8445145-8445272,8445519-8445623,8445724-8445986,8446147-8446389,8446479-8446654,8446776-8446880,8447057-8447152	AT1G23900.2  CDS  gene_syn GAMMA-ADAPTIN 1, Gamma-ADR, Gamma-adaptin  gene GAMMA-ADAPTIN 1  function Encodes large subunit of the heterotetrameric adaptor protein complex AP-1. AP-1 is required for clathrin coated vesicles budding from the trans-Golgi network or plasma membrane  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component AP-1 adaptor complex|GO:0030121|10229581|ISS  go_process vesicle-mediated transport|GO:0016192|10229581|ISS  go_function clathrin binding|GO:0030276||ISS  product GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1); binding / clathrin binding / protein binding / protein transporter  note GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1); FUNCTIONS IN: protein transporter activity, protein binding, clathrin binding, binding; INVOLVED IN: vesicle-mediated transport; LOCATED IN: AP-1 adaptor complex; CONTAINS InterPro DOMAIN/s: Adaptor protein complex AP-1, gamma subunit (InterPro:IPR017107), Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain (InterPro:IPR008152), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Clathrin adaptor, gamma-adaptin, appendage (InterPro:IPR008153), Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain (InterPro:IPR013041), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: binding / clathrin binding / protein binding / protein transporter (TAIR:AT1G60070.1); Has 2636 Blast hits to 2548 proteins in 191 species: Archae - 0; Bacteria - 2; Metazoa - 1275; Fungi - 618; Plants - 194; Viruses - 0; Other Eukaryotes - 547 (source: NCBI BLink).  protein_id AT1G23900.2p  transcript_id AT1G23900.2  protein_id AT1G23900.2p  transcript_id AT1G23900.2  
At1g23910	chr1:008451068	0.0	C/8451068-8451289	AT1G23910.1  CDS  gene_syn T23E23.8, T23E23_8  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: Bet v I allergen family protein (TAIR:AT1G24000.1); Has 37 Blast hits to 35 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23910.1p  transcript_id AT1G23910.1  protein_id AT1G23910.1p  transcript_id AT1G23910.1  
At1g23920	chr1:008454200	0.0	W/8454200-8456566	AT1G23920.1  mRNA_TE_gene  pseudo  gene_syn T23E23.9  note Transposable element gene, Mutator-like transposase family, has a 3.6e-77 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g23930	chr1:008459082	0.0	C/8459082-8461460	AT1G23930.1  mRNA_TE_gene  pseudo  gene_syn T23E23.10, T23E23_10  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09370.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G37390.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G47330.1); similar to hypothetical protein 23.t00036 [Brassica oleracea] (GB:ABD65624.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048)  
At1g23935	chr1:008461939	0.0	W/8461939-8462007,8462145-8462238,8462316-8462381,8462484-8462524,8462655-8462750,8462828-8462908,8463035-8463100,8463203-8463271,8463559-8463669,8463770-8463862,8463962-8464008,8464116-8464191,8464543-8464824,8464954-8465943	AT1G23935.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Apoptosis inhibitory 5 (InterPro:IPR008383); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19515.2); Has 63 Blast hits to 53 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G23935.1p  transcript_id AT1G23935.1  protein_id AT1G23935.1p  transcript_id AT1G23935.1  
At1g23940	chr1:008466094	0.0	W/8466094-8466146,8466383-8466487,8466588-8466799,8466957-8466990,8467362-8467637,8467807-8467948,8468038-8468211,8468460-8468639,8468718-8468845,8469055-8469159,8469268-8469346	AT1G23940.1  CDS  gene_syn T23E23.12, T23E23_12  go_component membrane coat|GO:0030117||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  product adaptin family protein  note adaptin family protein; FUNCTIONS IN: protein binding, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1); binding / clathrin binding / protein binding / protein transporter (TAIR:AT1G23900.2); Has 1586 Blast hits to 1227 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 799; Fungi - 299; Plants - 165; Viruses - 0; Other Eukaryotes - 323 (source: NCBI BLink).  protein_id AT1G23940.1p  transcript_id AT1G23940.1  protein_id AT1G23940.1p  transcript_id AT1G23940.1  
At1g23950	chr1:008471273	0.0	C/8471273-8471353,8471003-8471158,8470684-8470897,8470347-8470602,8470164-8470215	AT1G23950.4  CDS  gene_syn T23E23.13, T23E23_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23970.2); Has 51 Blast hits to 50 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23950.4p  transcript_id AT1G23950.4  protein_id AT1G23950.4p  transcript_id AT1G23950.4  
At1g23950	chr1:008471273	0.0	C/8471273-8471353,8471003-8471158,8470684-8470897,8470352-8470512,8470135-8470221,8469712-8470044	AT1G23950.5  CDS  gene_syn T23E23.13, T23E23_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23970.2); Has 73 Blast hits to 72 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23950.5p  transcript_id AT1G23950.5  protein_id AT1G23950.5p  transcript_id AT1G23950.5  
At1g23950	chr1:008471273	0.0	C/8471273-8471353,8471003-8471158,8470684-8470897,8470352-8470602,8470105-8470221	AT1G23950.1  CDS  gene_syn T23E23.13, T23E23_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23970.2); Has 64 Blast hits to 63 proteins in 2 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23950.1p  transcript_id AT1G23950.1  protein_id AT1G23950.1p  transcript_id AT1G23950.1  
At1g23950	chr1:008471273	0.0	C/8471273-8471353,8471003-8471158,8470684-8470897,8470352-8470602,8470135-8470221,8469712-8470044	AT1G23950.2  CDS  gene_syn T23E23.13, T23E23_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23970.2); Has 79 Blast hits to 75 proteins in 2 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23950.2p  transcript_id AT1G23950.2  protein_id AT1G23950.2p  transcript_id AT1G23950.2  
At1g23950	chr1:008471273	0.0	C/8471273-8471353,8471003-8471158,8470699-8470897,8470352-8470602,8470135-8470221,8469712-8470044	AT1G23950.3  CDS  gene_syn T23E23.13, T23E23_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23970.1); Has 79 Blast hits to 75 proteins in 2 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23950.3p  transcript_id AT1G23950.3  protein_id AT1G23950.3p  transcript_id AT1G23950.3  
At1g23960	chr1:008479944	0.0	C/8479944-8480006,8479672-8479827,8479378-8479579,8479162-8479289,8478992-8479081,8478627-8478896	AT1G23960.1  CDS  gene_syn T23E23.14, T23E23_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23970.1); Has 74 Blast hits to 73 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23960.1p  transcript_id AT1G23960.1  protein_id AT1G23960.1p  transcript_id AT1G23960.1  
At1g23960	chr1:008479944	0.0	C/8479944-8480006,8479672-8479827,8479378-8479579,8479162-8479289,8478992-8479081,8478627-8478896	AT1G23960.2  CDS  gene_syn T23E23.14, T23E23_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23970.1); Has 74 Blast hits to 73 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23960.2p  transcript_id AT1G23960.2  protein_id AT1G23960.2p  transcript_id AT1G23960.2  
At1g23965	chr1:008480570	0.0	C/8480570-8480923	AT1G23965.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ATP binding / DNA binding (TAIR:AT1G70270.1).  protein_id AT1G23965.1p  transcript_id AT1G23965.1  protein_id AT1G23965.1p  transcript_id AT1G23965.1  
At1g23970	chr1:008483743	0.0	C/8483743-8483829,8483409-8483564,8483091-8483304,8482759-8483009,8482578-8482664,8482145-8482486	AT1G23970.2  CDS  gene_syn T23E23.26, T23E23_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23950.2); Has 75 Blast hits to 73 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23970.2p  transcript_id AT1G23970.2  protein_id AT1G23970.2p  transcript_id AT1G23970.2  
At1g23970	chr1:008483743	0.0	C/8483743-8483829,8483409-8483564,8483106-8483304,8482759-8483009,8482578-8482664,8482145-8482486	AT1G23970.1  CDS  gene_syn T23E23.26, T23E23_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23950.3); Has 75 Blast hits to 73 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23970.1p  transcript_id AT1G23970.1  protein_id AT1G23970.1p  transcript_id AT1G23970.1  
At1g23980	chr1:008484879	0.0	C/8484879-8485988	AT1G23980.1  CDS  gene_syn T23E23.15, T23E23_15  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G40250.1); Has 6153 Blast hits to 6137 proteins in 230 species: Archae - 0; Bacteria - 6; Metazoa - 1866; Fungi - 444; Plants - 2699; Viruses - 58; Other Eukaryotes - 1080 (source: NCBI BLink).  protein_id AT1G23980.1p  transcript_id AT1G23980.1  protein_id AT1G23980.1p  transcript_id AT1G23980.1  
At1g23990	chr1:008490634	0.0	W/8490634-8492730	AT1G23990.1  mRNA_TE_gene  pseudo  gene_syn T23E23.16, T23E23_16  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.0e-30 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At1g24000	chr1:008496421	0.0	C/8496421-8496526,8496057-8496319	AT1G24000.1  CDS  gene_syn T23E23.17, T23E23_17  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product Bet v I allergen family protein  note Bet v I allergen family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, flower, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23910.1); Has 125 Blast hits to 106 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G24000.1p  transcript_id AT1G24000.1  protein_id AT1G24000.1p  transcript_id AT1G24000.1  
At1g24010	chr1:008499362	0.0	C/8499362-8499464,8498960-8499282	AT1G24010.1  CDS  gene_syn T23E23.27, T23E23_27  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, guard cell, pedicel, root, carpel; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: Bet v I allergen family protein (TAIR:AT1G24000.1); Has 23 Blast hits to 21 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G24010.1p  transcript_id AT1G24010.1  protein_id AT1G24010.1p  transcript_id AT1G24010.1  
At1g24020	chr1:008501272	0.0	C/8501272-8501458,8500653-8500933	AT1G24020.1  CDS  gene_syn MLP-LIKE PROTEIN 423, MLP423, T23E23.28, T23E23_28  gene MLP423  go_component membrane|GO:0016020|17432890|IDA  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  product MLP423 (MLP-LIKE PROTEIN 423)  note MLP-LIKE PROTEIN 423 (MLP423); INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: MLP34 (MLP-LIKE PROTEIN 34) (TAIR:AT1G70850.3); Has 930 Blast hits to 901 proteins in 105 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 922; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G24020.1p  transcript_id AT1G24020.1  protein_id AT1G24020.1p  transcript_id AT1G24020.1  
At1g24030	chr1:008503394	0.0	W/8503394-8503460,8503602-8503789,8503908-8504106,8504175-8504338,8504428-8504532,8504731-8504853,8504956-8505195	AT1G24030.2  CDS  gene_syn T23E23.18, T23E23_18  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G20530.1); Has 86904 Blast hits to 85876 proteins in 3162 species: Archae - 55; Bacteria - 7909; Metazoa - 37845; Fungi - 6991; Plants - 19027; Viruses - 419; Other Eukaryotes - 14658 (source: NCBI BLink).  protein_id AT1G24030.2p  transcript_id AT1G24030.2  protein_id AT1G24030.2p  transcript_id AT1G24030.2  
At1g24030	chr1:008503394	0.0	W/8503394-8503502,8503602-8503789,8503908-8504106,8504175-8504338,8504428-8504532,8504731-8504853,8504956-8505195	AT1G24030.1  CDS  gene_syn T23E23.18, T23E23_18  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G20530.1); Has 86914 Blast hits to 85888 proteins in 3162 species: Archae - 55; Bacteria - 7907; Metazoa - 37860; Fungi - 6978; Plants - 19048; Viruses - 419; Other Eukaryotes - 14647 (source: NCBI BLink).  protein_id AT1G24030.1p  transcript_id AT1G24030.1  protein_id AT1G24030.1p  transcript_id AT1G24030.1  
At1g24040	chr1:008505794	0.0	C/8505794-8506753	AT1G24040.1  CDS  gene_syn T23E23.19, T23E23_19  go_component chloroplast|GO:0009507||IEA  go_process metabolic process|GO:0008152||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_process metabolic process|GO:0008152||ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product GCN5-related N-acetyltransferase (GNAT) family protein  note GCN5-related N-acetyltransferase (GNAT) family protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 68 Blast hits to 68 proteins in 27 species: Archae - 9; Bacteria - 18; Metazoa - 3; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G24040.1p  transcript_id AT1G24040.1  protein_id AT1G24040.1p  transcript_id AT1G24040.1  
At1g24040	chr1:008505794	0.0	C/8505794-8506753	AT1G24040.2  CDS  gene_syn T23E23.19, T23E23_19  go_component chloroplast|GO:0009507||IEA  go_process metabolic process|GO:0008152||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_process metabolic process|GO:0008152||ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product GCN5-related N-acetyltransferase (GNAT) family protein  note GCN5-related N-acetyltransferase (GNAT) family protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 68 Blast hits to 68 proteins in 27 species: Archae - 9; Bacteria - 18; Metazoa - 3; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G24040.2p  transcript_id AT1G24040.2  protein_id AT1G24040.2p  transcript_id AT1G24040.2  
At1g24050	chr1:008507057	0.0	W/8507057-8507210,8507317-8507482,8507578-8507658,8508143-8508266,8508398-8508439	AT1G24050.1  CDS  gene_syn T23E23.20, T23E23_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70220.1); Has 153 Blast hits to 153 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 73; Fungi - 34; Plants - 30; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G24050.1p  transcript_id AT1G24050.1  protein_id AT1G24050.1p  transcript_id AT1G24050.1  
At1g24060	chr1:008509760	0.0	C/8509760-8510056,8509376-8509447	AT1G24060.1  CDS  gene_syn T23E23.21, T23E23_21  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G24060.1p  transcript_id AT1G24060.1  protein_id AT1G24060.1p  transcript_id AT1G24060.1  
At1g24062	chr1:008510824	0.0	C/8510824-8510896,8510502-8510725	AT1G24062.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54220.1); Has 12 Blast hits to 12 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G24062.1p  transcript_id AT1G24062.1  protein_id AT1G24062.1p  transcript_id AT1G24062.1  
At1g24068	chr1:008515506	0.0	W/8515506-8515971	AT1G24068.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G24068.1  
At1g24070	chr1:008519669	0.0	C/8519669-8519734,8519231-8519569,8518965-8519063,8518629-8518881,8518304-8518414,8518079-8518215,8517575-8517688,8516948-8517147,8516660-8516851,8516437-8516584	AT1G24070.1  CDS  gene_syn ATCSLA10, CELLULOSE SYNTHASE LIKE A10, CSLA10, T23E23.23, T23E23_23  gene ATCSLA10  function encodes a gene similar to cellulose synthase  go_component endomembrane system|GO:0012505||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  product ATCSLA10; cellulose synthase/ transferase, transferring glycosyl groups  note ATCSLA10; FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: ATCSLA15; cellulose synthase/ transferase, transferring glycosyl groups (TAIR:AT4G13410.1); Has 2949 Blast hits to 2944 proteins in 807 species: Archae - 106; Bacteria - 2169; Metazoa - 30; Fungi - 65; Plants - 297; Viruses - 11; Other Eukaryotes - 271 (source: NCBI BLink).  protein_id AT1G24070.1p  transcript_id AT1G24070.1  protein_id AT1G24070.1p  transcript_id AT1G24070.1  
At1g24080	chr1:008520290	0.0	C/8520290-8520363	AT1G24080.1  tRNA  gene_syn 51237.TRNA-VAL-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Val (anticodon: AAC)  transcript_id AT1G24080.1  
At1g24090	chr1:008520834	0.0	W/8520834-8521160,8521251-8521409,8521550-8521624,8521736-8521816,8521923-8522015,8522090-8522233,8522330-8522446,8522571-8522622,8523427-8523606,8524034-8524201,8524479-8524690	AT1G24090.1  CDS  gene_syn T23E23.25  go_function nucleic acid binding|GO:0003676||IEA  go_function ribonuclease H activity|GO:0004523||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function ribonuclease H activity|GO:0004523||ISS  product RNase H domain-containing protein  note RNase H domain-containing protein; FUNCTIONS IN: ribonuclease H activity, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L9 N-terminal-like (InterPro:IPR009027), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Ribonuclease H (InterPro:IPR002156), Putative thiol-disulphide oxidoreductase DCC (InterPro:IPR007263); BEST Arabidopsis thaliana protein match is: RNase H domain-containing protein (TAIR:AT5G51080.2); Has 2445 Blast hits to 2445 proteins in 371 species: Archae - 40; Bacteria - 735; Metazoa - 6; Fungi - 0; Plants - 1153; Viruses - 0; Other Eukaryotes - 511 (source: NCBI BLink).  protein_id AT1G24090.1p  transcript_id AT1G24090.1  protein_id AT1G24090.1p  transcript_id AT1G24090.1  
At1g24100	chr1:008526354	0.0	C/8526354-8527010,8525547-8526272	AT1G24100.1  CDS  gene_syn F3I6.2, F3I6_2, UDP-glucosyl transferase 74B1, UGT74B1  gene UGT74B1  function Encodes a UDP-glucose:thiohydroximate S-glucosyltransferase, involved in glucosinolate biosynthesis  go_component cellular_component|GO:0005575||ND  go_process glucosinolate biosynthetic process|GO:0019761|15584955|IMP  go_process defense response to bacterium|GO:0042742|19095898|IMP  go_process callose deposition in cell wall during defense response|GO:0052544|19095898|IMP  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function thiohydroximate beta-D-glucosyltransferase activity|GO:0047251|15584955|IDA  product UGT74B1 (UDP-glucosyl transferase 74B1); UDP-glycosyltransferase/ thiohydroximate beta-D-glucosyltransferase/ transferase, transferring glycosyl groups  note UDP-glucosyl transferase 74B1 (UGT74B1); FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups, thiohydroximate beta-D-glucosyltransferase activity; INVOLVED IN: glucosinolate biosynthetic process, defense response to bacterium, callose deposition in cell wall during defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT1G05680.1); Has 4747 Blast hits to 4710 proteins in 338 species: Archae - 0; Bacteria - 177; Metazoa - 1730; Fungi - 18; Plants - 2692; Viruses - 100; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G24100.1p  transcript_id AT1G24100.1  protein_id AT1G24100.1p  transcript_id AT1G24100.1  
At1g24110	chr1:008527838	0.0	W/8527838-8528818	AT1G24110.1  CDS  gene_syn F3I6.3, F3I6_3  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, sepal, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT5G47000.1); Has 3151 Blast hits to 3137 proteins in 243 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 302; Plants - 2795; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT1G24110.1p  transcript_id AT1G24110.1  protein_id AT1G24110.1p  transcript_id AT1G24110.1  
At1g24120	chr1:008531810	0.0	C/8531810-8531946,8531381-8531504,8531011-8531093,8530809-8530920,8530606-8530710,8530471-8530521,8530260-8530349,8530058-8530166,8529735-8529937,8529283-8529579	AT1G24120.1  CDS  gene_syn ARG1-LIKE 1, ARL1, F3I6.4, F3I6_4  gene ARL1  function encodes a DnaJ-like protein similar to ARG1 and ARL2 that are both involved in root and hypocotyl gravitropism response. However, null mutation in this gene does not result in defects in gravitropism. Gene is expressed in all tissues examined.  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product ARL1 (ARG1-LIKE 1); heat shock protein binding / unfolded protein binding  note ARG1-LIKE 1 (ARL1); FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: ARL2 (ARG1-LIKE 2); heat shock protein binding / unfolded protein binding (TAIR:AT1G59980.1); Has 17393 Blast hits to 17208 proteins in 1957 species: Archae - 111; Bacteria - 5447; Metazoa - 3871; Fungi - 1630; Plants - 1268; Viruses - 13; Other Eukaryotes - 5053 (source: NCBI BLink).  protein_id AT1G24120.1p  transcript_id AT1G24120.1  protein_id AT1G24120.1p  transcript_id AT1G24120.1  
At1g24130	chr1:008534183	0.0	C/8534183-8535430	AT1G24130.1  CDS  gene_syn F3I6.5, F3I6_5  go_component chloroplast|GO:0009507||IEA  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, heterotrimeric G-protein complex; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G50120.1); Has 33915 Blast hits to 16327 proteins in 570 species: Archae - 40; Bacteria - 4362; Metazoa - 14549; Fungi - 6756; Plants - 3137; Viruses - 0; Other Eukaryotes - 5071 (source: NCBI BLink).  protein_id AT1G24130.1p  transcript_id AT1G24130.1  protein_id AT1G24130.1p  transcript_id AT1G24130.1  
At1g24140	chr1:008536131	0.0	C/8536131-8537285	AT1G24140.1  CDS  gene_syn F3I6.6, F3I6_6  go_process proteolysis|GO:0006508||IEA  go_process metabolic process|GO:0008152||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_function metallopeptidase activity|GO:0008237||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process proteolysis|GO:0006508||ISS  go_function metalloendopeptidase activity|GO:0004222||ISS  product matrixin family protein  note matrixin family protein; FUNCTIONS IN: metallopeptidase activity, metalloendopeptidase activity; INVOLVED IN: proteolysis, metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M10A and M12B, matrixin and adamalysin (InterPro:IPR001818), Peptidoglycan binding-like (InterPro:IPR002477), Peptidase, metallopeptidases (InterPro:IPR006026); BEST Arabidopsis thaliana protein match is: MMP (MATRIX METALLOPROTEINASE); metalloendopeptidase/ metallopeptidase (TAIR:AT1G70170.1); Has 2158 Blast hits to 1980 proteins in 154 species: Archae - 3; Bacteria - 54; Metazoa - 1889; Fungi - 2; Plants - 83; Viruses - 37; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT1G24140.1p  transcript_id AT1G24140.1  protein_id AT1G24140.1p  transcript_id AT1G24140.1  
At1g24145	chr1:008541040	0.0	W/8541040-8541148,8541339-8541616	AT1G24145.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G24145.1p  transcript_id AT1G24145.1  protein_id AT1G24145.1p  transcript_id AT1G24145.1  
At1g24147	chr1:008542522	0.0	W/8542522-8542624,8543026-8543306	AT1G24147.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G24147.1p  transcript_id AT1G24147.1  protein_id AT1G24147.1p  transcript_id AT1G24147.1  
At1g24148	chr1:008544420	0.0	W/8544420-8545551	AT1G24148.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G24148.1  
At1g24150	chr1:008549518	0.0	W/8549518-8550536,8550639-8551116,8551230-8551910	AT1G24150.1  CDS  gene_syn ATFH4, F3I6.8, F3I6_8, FH4, FORMIN HOMOLOGUE 4  gene FH4  function Encodes a group I formin. Localized to cell junctions. Polymerizes actin. Binds profilin.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cell-cell junction|GO:0005911|16313636|IDA  go_process actin filament polymerization|GO:0030041|16313636|IDA  go_function actin binding|GO:0003779|12417149|ISS  go_function actin binding|GO:0003779|15256004|ISS  go_function actin binding|GO:0003779||ISS  go_function protein binding|GO:0005515|16313636|IPI  product FH4 (FORMIN HOMOLOGUE 4); actin binding / protein binding  note FORMIN HOMOLOGUE 4 (FH4); FUNCTIONS IN: protein binding, actin binding; INVOLVED IN: actin filament polymerization; LOCATED IN: cell-cell junction, plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding FH2 and DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: ATFH8 (formin 8); actin binding / actin filament binding / profilin binding (TAIR:AT1G70140.1); Has 26280 Blast hits to 13658 proteins in 777 species: Archae - 44; Bacteria - 2836; Metazoa - 9808; Fungi - 2901; Plants - 6267; Viruses - 1292; Other Eukaryotes - 3132 (source: NCBI BLink).  protein_id AT1G24150.1p  transcript_id AT1G24150.1  protein_id AT1G24150.1p  transcript_id AT1G24150.1  
At1g24159	chr1:008552775	0.0	W/8552775-8552896,8553085-8553385	AT1G24159.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: lectin protein kinase, putative (TAIR:AT1G70130.1).  protein_id AT1G24159.1p  transcript_id AT1G24159.1  protein_id AT1G24159.1p  transcript_id AT1G24159.1  
At1g24160	chr1:008555789	0.0	C/8555789-8555830,8554889-8555689,8554344-8554784,8554208-8554266,8554001-8554106,8553858-8553914,8553669-8553785	AT1G24160.1  CDS  gene_syn F3I6.9, F3I6_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70100.3); Has 4520 Blast hits to 3464 proteins in 329 species: Archae - 12; Bacteria - 317; Metazoa - 1888; Fungi - 343; Plants - 154; Viruses - 31; Other Eukaryotes - 1775 (source: NCBI BLink).  protein_id AT1G24160.1p  transcript_id AT1G24160.1  protein_id AT1G24160.1p  transcript_id AT1G24160.1  
At1g24170	chr1:008557451	0.0	C/8557451-8558632	AT1G24170.1  CDS  gene_syn F3I6.10, F3I6_10, GALACTURONOSYLTRANSFERASE-LIKE 8, GATL8, LGT9  gene LGT9  function Encodes a protein with putative galacturonosyltransferase activity.  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS  product LGT9; polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note LGT9; FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: LGT8 (GLUCOSYL TRANSFERASE FAMILY 8); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT1G70090.2); Has 1201 Blast hits to 1195 proteins in 229 species: Archae - 0; Bacteria - 508; Metazoa - 189; Fungi - 2; Plants - 419; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT1G24170.1p  transcript_id AT1G24170.1  protein_id AT1G24170.1p  transcript_id AT1G24170.1  
At1g24180	chr1:008562692	0.0	C/8562692-8563382,8562529-8562608,8562054-8562131,8561413-8561508,8561248-8561319,8561087-8561140,8560939-8561004,8560777-8560821	AT1G24180.1  CDS  gene_syn F3I6.11, F3I6_11, IAR4  gene IAR4  function Arabidopsis thaliana pyruvate dehydrogenase E1a-like subunit. 81% identical to a previously characterized Arabidopsis mitochondrial PDH E1a-subunit, At1g59900  go_component mitochondrion|GO:0005739|18385124|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function pyruvate dehydrogenase (acetyl-transferring) activity|GO:0004739||IEA  go_function oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor|GO:0016624||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process metabolic process|GO:0008152||ISS  go_function pyruvate dehydrogenase (acetyl-transferring) activity|GO:0004739||ISS  product IAR4; oxidoreductase, acting on the aldehyde or oxo group of donors, disulfide as acceptor / pyruvate dehydrogenase (acetyl-transferring)  note IAR4; FUNCTIONS IN: oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, pyruvate dehydrogenase (acetyl-transferring) activity; INVOLVED IN: response to salt stress, metabolic process; LOCATED IN: cytosol, mitochondrion, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrogenase, E1 component (InterPro:IPR001017), Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y (InterPro:IPR017597); BEST Arabidopsis thaliana protein match is: AT-E1 ALPHA; oxidoreductase, acting on the aldehyde or oxo group of donors, disulfide as acceptor / pyruvate dehydrogenase (acetyl-transferring) (TAIR:AT1G59900.1); Has 6617 Blast hits to 6614 proteins in 1048 species: Archae - 46; Bacteria - 3131; Metazoa - 505; Fungi - 168; Plants - 119; Viruses - 0; Other Eukaryotes - 2648 (source: NCBI BLink).  protein_id AT1G24180.1p  transcript_id AT1G24180.1  protein_id AT1G24180.1p  transcript_id AT1G24180.1  
At1g24190	chr1:008569788	0.0	C/8569788-8569996,8569515-8569701,8569330-8569428,8569119-8569253,8568735-8569029,8568507-8568637,8568353-8568428,8568210-8568264,8567850-8568051,8567602-8567756,8567337-8567464,8566970-8567224,8566249-8566893,8566069-8566154,8565216-8565827,8565013-8565113,8564786-8564924,8564542-8564694,8564282-8564448,8564086-8564188,8563858-8563986	AT1G24190.1  CDS  gene_syn ARABIDOPSIS THALIANA SIN3 HOMOLOG, ATSIN3, F3I6.12, F3I6_12, SIN3, SIN3-LIKE 3, SNL3  gene SNL3  function Enhances AtERF7-mediated transcriptional repression. RNAi lines show ABA hypersensitivity. Interacts with ERF7 and HDA19.  go_component nucleus|GO:0005634||IEA  go_component endomembrane system|GO:0012505||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to abscisic acid stimulus|GO:0009737|15994908|IMP  go_process negative regulation of transcription|GO:0016481|15994908|IEP  go_function transcription repressor activity|GO:0016564|15994908|IEP  product SNL3 (SIN3-LIKE 3); transcription repressor  note SIN3-LIKE 3 (SNL3); FUNCTIONS IN: transcription repressor activity; INVOLVED IN: negative regulation of transcription, response to abscisic acid stimulus, regulation of transcription, DNA-dependent; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SNL4 (SIN3-LIKE 4) (TAIR:AT1G70060.1); Has 2584 Blast hits to 1405 proteins in 254 species: Archae - 17; Bacteria - 144; Metazoa - 1173; Fungi - 550; Plants - 225; Viruses - 28; Other Eukaryotes - 447 (source: NCBI BLink).  protein_id AT1G24190.1p  transcript_id AT1G24190.1  protein_id AT1G24190.1p  transcript_id AT1G24190.1  
At1g24200	chr1:008572238	0.0	C/8572238-8572377,8571963-8572140,8571779-8571877,8571631-8571699,8571173-8571277	AT1G24200.1  CDS  gene_syn F3I6.13, F3I6_13  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function molecular_function|GO:0003674||ND  product paired amphipathic helix repeat-containing protein  note paired amphipathic helix repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SNL3 (SIN3-LIKE 3); transcription repressor (TAIR:AT1G24190.1); Has 797 Blast hits to 422 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 397; Fungi - 245; Plants - 131; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT1G24200.1p  transcript_id AT1G24200.1  protein_id AT1G24200.1p  transcript_id AT1G24200.1  
At1g24210	chr1:008574388	0.0	C/8574388-8574527,8574175-8574298,8573973-8574074,8573770-8573871	AT1G24210.1  CDS  gene_syn F3I6.14, F3I6_14  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function molecular_function|GO:0003674||ND  product paired amphipathic helix repeat-containing protein  note paired amphipathic helix repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: paired amphipathic helix repeat-containing protein (TAIR:AT1G27240.1); Has 383 Blast hits to 359 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 178; Fungi - 74; Plants - 117; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G24210.1p  transcript_id AT1G24210.1  protein_id AT1G24210.1p  transcript_id AT1G24210.1  
At1g24212	chr1:008575876	0.0	C/8575876-8576245	AT1G24212.1  pseudogenic_transcript  pseudo  function pseudogene of paired amphipathic helix repeat-containing protein  
At1g24220	chr1:008582274	0.0	C/8582274-8582413,8581974-8582166,8581574-8581866,8580948-8581464,8580759-8580860,8580583-8580676,8580065-8580167,8579592-8579753,8579072-8579495,8578845-8578946,8578658-8578762	AT1G24220.1  CDS  gene_syn F3I6.15, F3I6_15  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function molecular_function|GO:0003674||ND  product paired amphipathic helix repeat-containing protein  note paired amphipathic helix repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: paired amphipathic helix repeat-containing protein (TAIR:AT1G27240.1); Has 1140 Blast hits to 418 proteins in 120 species: Archae - 0; Bacteria - 6; Metazoa - 497; Fungi - 229; Plants - 354; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT1G24220.1p  transcript_id AT1G24220.1  protein_id AT1G24220.1p  transcript_id AT1G24220.1  
At1g24230	chr1:008584993	0.0	C/8584993-8585135,8584708-8584920,8584421-8584595,8584224-8584325,8584039-8584143	AT1G24230.1  CDS  gene_syn F3I6.16, F3I6_16  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function molecular_function|GO:0003674||ND  product paired amphipathic helix repeat-containing protein  note paired amphipathic helix repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: paired amphipathic helix repeat-containing protein (TAIR:AT1G23810.1); Has 810 Blast hits to 442 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 343; Fungi - 237; Plants - 200; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G24230.1p  transcript_id AT1G24230.1  protein_id AT1G24230.1p  transcript_id AT1G24230.1  
At1g24240	chr1:008586431	0.0	W/8586431-8586640,8587154-8587285,8587365-8587451,8587556-8587689,8587865-8587970	AT1G24240.1  CDS  gene_syn F3I6.17, F3I6_17  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L19 family protein  note ribosomal protein L19 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L19 (InterPro:IPR001857); BEST Arabidopsis thaliana protein match is: ribosomal protein L19 family protein (TAIR:AT4G11630.1); Has 5360 Blast hits to 5360 proteins in 1482 species: Archae - 0; Bacteria - 2918; Metazoa - 87; Fungi - 39; Plants - 95; Viruses - 0; Other Eukaryotes - 2221 (source: NCBI BLink).  protein_id AT1G24240.1p  transcript_id AT1G24240.1  protein_id AT1G24240.1p  transcript_id AT1G24240.1  
At1g24250	chr1:008589404	0.0	C/8589404-8589546,8589007-8589321,8588788-8588905,8588606-8588707,8588442-8588522	AT1G24250.1  CDS  gene_syn F3I6.18, F3I6_18  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function molecular_function|GO:0003674||ND  product paired amphipathic helix repeat-containing protein  note paired amphipathic helix repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: paired amphipathic helix repeat-containing protein (TAIR:AT1G23810.1); Has 634 Blast hits to 372 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 326; Fungi - 142; Plants - 151; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G24250.1p  transcript_id AT1G24250.1  protein_id AT1G24250.1p  transcript_id AT1G24250.1  
At1g24256	chr1:008592078	0.0	W/8592078-8592176,8592395-8592466,8592548-8592739,8592921-8592989	AT1G24256.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35640.1).  protein_id AT1G24256.1p  transcript_id AT1G24256.1  protein_id AT1G24256.1p  transcript_id AT1G24256.1  
At1g24260	chr1:008595678	0.0	C/8595678-8595862,8594807-8594891,8594630-8594697,8594446-8594545,8594326-8594367,8594201-8594242,8593973-8594115,8593790-8593880	AT1G24260.2  CDS  gene_syn AGAMOUS-LIKE 9, AGL9, F3I6.19, F3I6_19, SEP3, SEPALLATA3, TRANSCRIPTION FACTOR AGL9  gene SEP3  function Member of the MADs box transcription factor family. SEP3 is redundant with SEP1 and 2. Flowers of SEP1/2/3 triple mutants show a conversion of petals and stamens to sepals.SEP3 forms heterotetrameric complexes with other MADS box family members and binds to the CArG box motif.  go_component nucleus|GO:0005634|14617066|IDA  go_process cell fate specification|GO:0001708|10821278|IMP  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process flower development|GO:0009908|11439126|TAS  go_process specification of floral organ identity|GO:0010093|10821278|IMP  go_process ovule development|GO:0048481|14555696|IMP  go_function DNA binding|GO:0003677|19033361|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11439126|TAS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function protein binding|GO:0005515|14555696|IPI  go_function protein binding|GO:0005515|16854969|IPI  product SEP3 (SEPALLATA3); DNA binding / protein binding / transcription factor  note SEPALLATA3 (SEP3); FUNCTIONS IN: protein binding, transcription factor activity, DNA binding; INVOLVED IN: flower development, cell fate specification, specification of floral organ identity, regulation of transcription, DNA-dependent, ovule development; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: SEP1 (SEPALLATA1); DNA binding / transcription factor (TAIR:AT5G15800.1); Has 5346 Blast hits to 5344 proteins in 697 species: Archae - 0; Bacteria - 2; Metazoa - 556; Fungi - 203; Plants - 4525; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT1G24260.2p  transcript_id AT1G24260.2  protein_id AT1G24260.2p  transcript_id AT1G24260.2  
At1g24260	chr1:008595678	0.0	C/8595678-8595862,8594810-8594891,8594630-8594697,8594446-8594545,8594326-8594367,8594201-8594242,8593973-8594115,8593790-8593880	AT1G24260.1  CDS  gene_syn AGAMOUS-LIKE 9, AGL9, F3I6.19, F3I6_19, SEP3, SEPALLATA3, TRANSCRIPTION FACTOR AGL9  gene SEP3  function Member of the MADs box transcription factor family. SEP3 is redundant with SEP1 and 2. Flowers of SEP1/2/3 triple mutants show a conversion of petals and stamens to sepals.SEP3 forms heterotetrameric complexes with other MADS box family members and binds to the CArG box motif.  go_component nucleus|GO:0005634|14617066|IDA  go_process cell fate specification|GO:0001708|10821278|IMP  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process flower development|GO:0009908|11439126|TAS  go_process specification of floral organ identity|GO:0010093|10821278|IMP  go_process ovule development|GO:0048481|14555696|IMP  go_function DNA binding|GO:0003677|19033361|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11439126|TAS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function protein binding|GO:0005515|14555696|IPI  go_function protein binding|GO:0005515|16854969|IPI  product SEP3 (SEPALLATA3); DNA binding / protein binding / transcription factor  note SEPALLATA3 (SEP3); FUNCTIONS IN: protein binding, transcription factor activity, DNA binding; INVOLVED IN: flower development, cell fate specification, specification of floral organ identity, regulation of transcription, DNA-dependent, ovule development; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: SEP1 (SEPALLATA1); DNA binding / transcription factor (TAIR:AT5G15800.1); Has 5372 Blast hits to 5370 proteins in 697 species: Archae - 0; Bacteria - 2; Metazoa - 554; Fungi - 203; Plants - 4557; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT1G24260.1p  transcript_id AT1G24260.1  protein_id AT1G24260.1p  transcript_id AT1G24260.1  
At1g24265	chr1:008600613	0.0	W/8600613-8600655,8601005-8601078,8601177-8601254,8601382-8601457,8601783-8601847,8602049-8602150,8602347-8602436,8602540-8602614,8602719-8602751,8602828-8602902,8602994-8603056,8603181-8603249,8603330-8603374,8603472-8603630	AT1G24265.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24267.1); Has 115 Blast hits to 113 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G24265.1p  transcript_id AT1G24265.1  protein_id AT1G24265.1p  transcript_id AT1G24265.1  
At1g24265	chr1:008600613	0.0	W/8600613-8600655,8601005-8601078,8601177-8601254,8601382-8601457,8601783-8601847,8602049-8602150,8602347-8602436,8602540-8602614,8602719-8602751,8602828-8602902,8602994-8603056,8603181-8603249,8603330-8603374,8603472-8603630	AT1G24265.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24267.1); Has 115 Blast hits to 113 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G24265.2p  transcript_id AT1G24265.2  protein_id AT1G24265.2p  transcript_id AT1G24265.2  
At1g24267	chr1:008607199	0.0	C/8607199-8607241,8606669-8606742,8606508-8606585,8606311-8606386,8606170-8606234,8605848-8605949,8605617-8605706,8605428-8605515,8605313-8605335,8605154-8605228,8604998-8605060,8604815-8604883,8604691-8604735,8604451-8604594	AT1G24267.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24265.2); Has 88 Blast hits to 86 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 85; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G24267.2p  transcript_id AT1G24267.2  protein_id AT1G24267.2p  transcript_id AT1G24267.2  
At1g24267	chr1:008607199	0.0	C/8607199-8607241,8606669-8606742,8606508-8606585,8606311-8606386,8606170-8606234,8605848-8605949,8605617-8605706,8605441-8605515,8605313-8605345,8605154-8605228,8604998-8605060,8604815-8604883,8604691-8604735,8604451-8604594	AT1G24267.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24265.2); Has 87 Blast hits to 85 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G24267.1p  transcript_id AT1G24267.1  protein_id AT1G24267.1p  transcript_id AT1G24267.1  
At1g24270	chr1:008608123	0.0	C/8608123-8608743	AT1G24270.1  CDS  gene_syn F3I6.21, F3I6_21  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13090.1); Has 46 Blast hits to 45 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G24270.1p  transcript_id AT1G24270.1  protein_id AT1G24270.1p  transcript_id AT1G24270.1  
At1g24280	chr1:008609495	0.0	W/8609495-8609708,8609907-8610124,8610209-8610303,8610415-8610529,8610801-8611006,8611092-8611241,8611329-8611449,8611523-8611752,8611827-8612027,8612134-8612383	AT1G24280.1  CDS  gene_syn F3I6.22, F3I6_22, G6PD3, GLUCOSE-6-PHOSPHATE DEHYDROGENASE 3  gene G6PD3  function Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is most highly expressed in root.  go_component chloroplast|GO:0009507|15634201|ISS  go_process glucose metabolic process|GO:0006006|15634201|IDA  go_process glucose metabolic process|GO:0006006||ISS  go_process pentose-phosphate shunt, oxidative branch|GO:0009051|15634201|IDA  go_function glucose-6-phosphate dehydrogenase activity|GO:0004345|15634201|IDA  go_function glucose-6-phosphate dehydrogenase activity|GO:0004345||ISS  product G6PD3 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 3); glucose-6-phosphate dehydrogenase  note GLUCOSE-6-PHOSPHATE DEHYDROGENASE 3 (G6PD3); FUNCTIONS IN: glucose-6-phosphate dehydrogenase activity; INVOLVED IN: pentose-phosphate shunt, oxidative branch, glucose metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose-6-phosphate dehydrogenase (InterPro:IPR001282); BEST Arabidopsis thaliana protein match is: G6PD2 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 2); glucose-6-phosphate dehydrogenase (TAIR:AT5G13110.1); Has 5506 Blast hits to 5494 proteins in 1287 species: Archae - 0; Bacteria - 3296; Metazoa - 673; Fungi - 121; Plants - 280; Viruses - 2; Other Eukaryotes - 1134 (source: NCBI BLink).  protein_id AT1G24280.1p  transcript_id AT1G24280.1  protein_id AT1G24280.1p  transcript_id AT1G24280.1  
At1g24290	chr1:008612650	0.0	C/8612650-8614227	AT1G24290.1  CDS  gene_syn F3I6.23, F3I6_23  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATP binding|GO:0005524||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; EXPRESSED IN: shoot apex, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), ATPase, AAA-type, core (InterPro:IPR003959), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: replication factor C 36 kDA, putative (TAIR:AT1G77470.1); Has 14020 Blast hits to 13994 proteins in 1675 species: Archae - 392; Bacteria - 8113; Metazoa - 478; Fungi - 462; Plants - 133; Viruses - 43; Other Eukaryotes - 4399 (source: NCBI BLink).  protein_id AT1G24290.1p  transcript_id AT1G24290.1  protein_id AT1G24290.1p  transcript_id AT1G24290.1  
At1g24300	chr1:008620354	0.0	C/8620354-8620420,8619865-8619935,8618879-8619709,8618662-8618752,8618465-8618563,8617617-8618327,8615284-8617452,8615116-8615161,8614860-8615005,8614515-8614771	AT1G24300.1  CDS  gene_syn F3I6.24, F3I6_24  go_component chloroplast|GO:0009507|15028209|IDA  product unknown protein  note LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: GYF (InterPro:IPR003169); BEST Arabidopsis thaliana protein match is: GYF domain-containing protein (TAIR:AT1G27430.1); Has 21766 Blast hits to 10819 proteins in 514 species: Archae - 0; Bacteria - 738; Metazoa - 8216; Fungi - 1952; Plants - 1070; Viruses - 89; Other Eukaryotes - 9701 (source: NCBI BLink).  protein_id AT1G24300.1p  transcript_id AT1G24300.1  protein_id AT1G24300.1p  transcript_id AT1G24300.1  
At1g24310	chr1:008624192	0.0	W/8624192-8624581,8624664-8624717,8624804-8624863,8624998-8625108,8625284-8625349,8625435-8625521,8625623-8625724,8625802-8625951,8626066-8626179	AT1G24310.1  CDS  gene_syn F3I6.25, F3I6_25  go_component nucleolus|GO:0005730|15496452|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 2665 Blast hits to 2221 proteins in 198 species: Archae - 0; Bacteria - 36; Metazoa - 1026; Fungi - 539; Plants - 312; Viruses - 11; Other Eukaryotes - 741 (source: NCBI BLink).  protein_id AT1G24310.1p  transcript_id AT1G24310.1  protein_id AT1G24310.1p  transcript_id AT1G24310.1  
At1g24320	chr1:008630825	0.0	C/8630825-8630935,8630672-8630745,8629993-8630413,8629822-8629908,8629641-8629709,8629424-8629520,8629135-8629217,8628933-8629040,8628737-8628858,8628546-8628653,8628380-8628453,8628163-8628288,8627939-8628006,8627644-8627793,8627512-8627565,8627376-8627432,8627121-8627270,8626911-8627002,8626659-8626832,8626437-8626581	AT1G24320.1  CDS  gene_syn F3I6.26, F3I6_26  go_process oligosaccharide metabolic process|GO:0009311||IEA  go_function catalytic activity|GO:0003824||IEA  go_function mannosyl-oligosaccharide glucosidase activity|GO:0004573||IEA  go_component cellular_component|GO:0005575||ND  go_function alpha-glucosidase activity|GO:0004558||ISS  product alpha-glucosidase, putative  note alpha-glucosidase, putative; FUNCTIONS IN: mannosyl-oligosaccharide glucosidase activity, alpha-glucosidase activity, catalytic activity; INVOLVED IN: oligosaccharide metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 63 (InterPro:IPR004888), Six-hairpin glycosidase-like (InterPro:IPR008928); BEST Arabidopsis thaliana protein match is: GCS1 (GLUCOSIDASE 1); alpha-glucosidase (TAIR:AT1G67490.1); Has 308 Blast hits to 306 proteins in 127 species: Archae - 2; Bacteria - 40; Metazoa - 96; Fungi - 85; Plants - 23; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT1G24320.1p  transcript_id AT1G24320.1  protein_id AT1G24320.1p  transcript_id AT1G24320.1  
At1g24330	chr1:008631779	0.0	W/8631779-8631829,8632187-8632372,8632463-8632570,8632722-8633884,8634028-8634835	AT1G24330.1  CDS  gene_syn F3I6.27, F3I6_27  go_component chloroplast|GO:0009507|18431481|IDA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  product armadillo/beta-catenin repeat family protein / U-box domain-containing family protein  note armadillo/beta-catenin repeat family protein / U-box domain-containing family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein / U-box domain-containing family protein (TAIR:AT1G67530.2); Has 1801 Blast hits to 1748 proteins in 168 species: Archae - 0; Bacteria - 38; Metazoa - 336; Fungi - 98; Plants - 1126; Viruses - 3; Other Eukaryotes - 200 (source: NCBI BLink).  protein_id AT1G24330.1p  transcript_id AT1G24330.1  protein_id AT1G24330.1p  transcript_id AT1G24330.1  
At1g24340	chr1:008635416	0.0	W/8635416-8635620,8635735-8635817,8635906-8636041,8636154-8636647,8636757-8636804,8636949-8637123,8637476-8637588,8637675-8637771,8637856-8638075,8638308-8638866	AT1G24340.1  CDS  gene_syn F3I6.28, F3I6_28, emb2421, embryo defective 2421  gene emb2421  go_function monooxygenase activity|GO:0004497||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function monooxygenase activity|GO:0004497||ISS  product emb2421 (embryo defective 2421); monooxygenase/ oxidoreductase  note embryo defective 2421 (emb2421); FUNCTIONS IN: oxidoreductase activity, monooxygenase activity; INVOLVED IN: embryonic development ending in seed dormancy; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aromatic-ring hydroxylase-like (InterPro:IPR003042), Monooxygenase, FAD-binding (InterPro:IPR002938); Has 3629 Blast hits to 3559 proteins in 694 species: Archae - 0; Bacteria - 2263; Metazoa - 15; Fungi - 561; Plants - 20; Viruses - 0; Other Eukaryotes - 770 (source: NCBI BLink).  protein_id AT1G24340.1p  transcript_id AT1G24340.1  protein_id AT1G24340.1p  transcript_id AT1G24340.1  
At1g24350	chr1:008640183	0.0	C/8640183-8640313,8639874-8640030,8639737-8639787,8639506-8639598,8639098-8639172	AT1G24350.1  CDS  gene_syn F3I6.29, F3I6_29  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase/vanadium-dependent haloperoxidase related (InterPro:IPR003832); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67600.1); Has 626 Blast hits to 626 proteins in 204 species: Archae - 0; Bacteria - 365; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 158 (source: NCBI BLink).  protein_id AT1G24350.1p  transcript_id AT1G24350.1  protein_id AT1G24350.1p  transcript_id AT1G24350.1  
At1g24350	chr1:008640183	0.0	C/8640183-8640313,8639874-8640030,8639737-8639787,8639506-8639598,8639407-8639418	AT1G24350.2  CDS  gene_syn F3I6.29, F3I6_29  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase/vanadium-dependent haloperoxidase related (InterPro:IPR003832); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67600.1); Has 622 Blast hits to 622 proteins in 204 species: Archae - 0; Bacteria - 365; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 154 (source: NCBI BLink).  protein_id AT1G24350.2p  transcript_id AT1G24350.2  protein_id AT1G24350.2p  transcript_id AT1G24350.2  
At1g24360	chr1:008640820	0.0	W/8640820-8640982,8641069-8641211,8641451-8641504,8641945-8642025,8642106-8642151,8642220-8642314,8642390-8642422,8642626-8642760,8642857-8642950,8643077-8643159,8643251-8643283	AT1G24360.1  CDS  gene_syn F21J9.2  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process fatty acid biosynthetic process|GO:0006633||IEA  go_process metabolic process|GO:0008152||IEA  go_function 3-oxoacyl-[acyl-carrier-protein] reductase activity|GO:0004316|1575676|ISS  product 3-oxoacyl-(acyl-carrier protein) reductase, chloroplast / 3-ketoacyl-acyl carrier protein reductase  note 3-oxoacyl-(acyl-carrier protein) reductase, chloroplast / 3-ketoacyl-acyl carrier protein reductase; FUNCTIONS IN: 3-oxoacyl-[acyl-carrier-protein] reductase activity; INVOLVED IN: metabolic process, fatty acid biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 3-oxoacyl-(acyl-carrier-protein) reductase (InterPro:IPR011284), NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: tropinone reductase, putative / tropine dehydrogenase, putative (TAIR:AT2G29370.1); Has 91644 Blast hits to 91258 proteins in 2522 species: Archae - 487; Bacteria - 47655; Metazoa - 7037; Fungi - 4959; Plants - 1790; Viruses - 5; Other Eukaryotes - 29711 (source: NCBI BLink).  protein_id AT1G24360.1p  transcript_id AT1G24360.1  protein_id AT1G24360.1p  transcript_id AT1G24360.1  
At1g24370	chr1:008643761	0.0	C/8643761-8645626	AT1G24370.1  mRNA_TE_gene  pseudo  gene_syn F21J9.3  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15310.1); similar to Os01g0180200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042205.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT93896.1); similar to ribosomal protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD23759.1); contains InterPro domain Protein of unknown function DUF635; (InterPro:IPR006912); contains InterPro domain Protein of unknown function DUF626, Arabidopsis thaliana; (InterPro:IPR006462); contains InterPro domain Bacterial adhesion; (InterPro:IPR008966)  
At1g24380	chr1:008646625	0.0	W/8646625-8646777,8646881-8647609	AT1G24380.1  CDS  gene_syn F21J9.4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10230.1); Has 131 Blast hits to 129 proteins in 25 species: Archae - 0; Bacteria - 2; Metazoa - 16; Fungi - 6; Plants - 69; Viruses - 2; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT1G24380.1p  transcript_id AT1G24380.1  protein_id AT1G24380.1p  transcript_id AT1G24380.1  
At1g24390	chr1:008648201	0.0	W/8648201-8648272,8648426-8648580,8648768-8648834	AT1G24390.1  CDS  gene_syn F21J9.5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G24390.1p  transcript_id AT1G24390.1  protein_id AT1G24390.1p  transcript_id AT1G24390.1  
At1g24388	chr1:008648623	0.0	C/8648623-8648694,8648402-8648530,8648099-8648311	AT1G24388.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17700.1); Has 44 Blast hits to 43 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G24388.1p  transcript_id AT1G24388.1  protein_id AT1G24388.1p  transcript_id AT1G24388.1  
At1g24400	chr1:008653380	0.0	C/8653380-8653561,8652912-8653295,8652311-8652704,8652120-8652225,8651931-8652022,8651771-8651839,8651563-8651661	AT1G24400.1  CDS  gene_syn AATL2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, F21J9.6, LHT2, LYSINE HISTIDINE TRANSPORTER 2  gene LHT2  function High-affinity transporter for neutral and acidic amino acids, expressed in tapetum tissue of anthers  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  go_function acidic amino acid transmembrane transporter activity|GO:0015172|15361141|IGI  go_function neutral amino acid transmembrane transporter activity|GO:0015175|15361141|IGI  product LHT2 (LYSINE HISTIDINE TRANSPORTER 2); acidic amino acid transmembrane transporter/ amino acid transmembrane transporter/ neutral amino acid transmembrane transporter  note LYSINE HISTIDINE TRANSPORTER 2 (LHT2); FUNCTIONS IN: neutral amino acid transmembrane transporter activity, acidic amino acid transmembrane transporter activity, amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: lysine and histidine specific transporter, putative (TAIR:AT1G67640.1); Has 2921 Blast hits to 2915 proteins in 235 species: Archae - 7; Bacteria - 103; Metazoa - 1067; Fungi - 483; Plants - 881; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink).  protein_id AT1G24400.1p  transcript_id AT1G24400.1  protein_id AT1G24400.1p  transcript_id AT1G24400.1  
At1g24405	chr1:008655253	0.0	W/8655253-8655438	AT1G24405.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 12 Blast hits to 12 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G24405.1p  transcript_id AT1G24405.1  protein_id AT1G24405.1p  transcript_id AT1G24405.1  
At1g24420	chr1:008656687	0.0	W/8656687-8657997	AT1G24420.1  CDS  gene_syn F21J9.8  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT4G15390.1); Has 1270 Blast hits to 1267 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 133; Plants - 1137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G24420.1p  transcript_id AT1G24420.1  protein_id AT1G24420.1p  transcript_id AT1G24420.1  
At1g24430	chr1:008658190	0.0	C/8658190-8659497	AT1G24430.1  CDS  gene_syn F21J9.9  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_function transferase activity|GO:0016740||ISS  product transferase/ transferase, transferring acyl groups other than amino-acyl groups  note transferase/ transferase, transferring acyl groups other than amino-acyl groups; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT3G26040.1); Has 920 Blast hits to 920 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 903; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G24430.1p  transcript_id AT1G24430.1  protein_id AT1G24430.1p  transcript_id AT1G24430.1  
At1g24440	chr1:008662340	0.0	W/8662340-8662419,8662897-8663053,8663179-8663245,8663326-8663777	AT1G24440.1  CDS  gene_syn F21J9.10  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G13195.1); Has 586 Blast hits to 585 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 244; Fungi - 42; Plants - 157; Viruses - 27; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT1G24440.1p  transcript_id AT1G24440.1  protein_id AT1G24440.1p  transcript_id AT1G24440.1  
At1g24450	chr1:008664201	0.0	W/8664201-8664278,8664376-8664464,8664669-8665077	AT1G24450.1  CDS  gene_syn F21J9.11, NFD2, NUCLEAR FUSION DEFECTIVE 2  gene NFD2  go_component vacuole|GO:0005773|15539469|IDA  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_function ribonuclease III activity|GO:0004525||IEA  go_process RNA processing|GO:0006396||ISS  go_function RNA binding|GO:0003723||ISS  go_function ribonuclease III activity|GO:0004525||ISS  product NFD2 (NUCLEAR FUSION DEFECTIVE 2); RNA binding / ribonuclease III  note NUCLEAR FUSION DEFECTIVE 2 (NFD2); FUNCTIONS IN: RNA binding, ribonuclease III activity; INVOLVED IN: RNA processing; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease III (InterPro:IPR000999); Has 1405 Blast hits to 1405 proteins in 451 species: Archae - 3; Bacteria - 885; Metazoa - 2; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 508 (source: NCBI BLink).  protein_id AT1G24450.1p  transcript_id AT1G24450.1  protein_id AT1G24450.1p  transcript_id AT1G24450.1  
At1g24460	chr1:008666072	0.0	W/8666072-8666173,8666264-8666395,8666499-8669753,8670080-8670778,8670841-8670910,8671007-8671656,8671820-8671967,8672064-8672145,8672236-8672338	AT1G24460.1  CDS  gene_syn F21J9.12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31570.1); Has 146166 Blast hits to 64397 proteins in 2264 species: Archae - 2251; Bacteria - 28256; Metazoa - 66049; Fungi - 10658; Plants - 5728; Viruses - 891; Other Eukaryotes - 32333 (source: NCBI BLink).  protein_id AT1G24460.1p  transcript_id AT1G24460.1  protein_id AT1G24460.1p  transcript_id AT1G24460.1  
At1g24470	chr1:008674056	0.0	W/8674056-8674398,8674947-8675232,8675835-8675904,8676038-8676277	AT1G24470.1  CDS  gene_syn F21J9.13  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function oxidoreductase activity|GO:0016491||ISS  go_function ketoreductase activity|GO:0045703|11792704|IDA  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, ketoreductase activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: YBR159; ketoreductase/ oxidoreductase (TAIR:AT1G67730.1); Has 53244 Blast hits to 53177 proteins in 1952 species: Archae - 364; Bacteria - 31727; Metazoa - 4176; Fungi - 2112; Plants - 1193; Viruses - 0; Other Eukaryotes - 13672 (source: NCBI BLink).  protein_id AT1G24470.1p  transcript_id AT1G24470.1  protein_id AT1G24470.1p  transcript_id AT1G24470.1  
At1g24480	chr1:008676440	0.0	C/8676440-8677159	AT1G24480.1  CDS  gene_syn F21J9.14  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function methyltransferase activity|GO:0008168||IEA  product methyltransferase  note methyltransferase; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: methyltransferase (TAIR:AT4G24805.1); Has 207 Blast hits to 207 proteins in 37 species: Archae - 2; Bacteria - 47; Metazoa - 0; Fungi - 6; Plants - 107; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT1G24480.1p  transcript_id AT1G24480.1  protein_id AT1G24480.1p  transcript_id AT1G24480.1  
At1g24485	chr1:008678858	0.0	W/8678858-8678939,8679034-8679559,8679857-8680464,8681004-8681063,8681326-8681475,8681600-8681670	AT1G24485.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: protein kinase-related (TAIR:AT3G46280.1); Has 918 Blast hits to 887 proteins in 141 species: Archae - 0; Bacteria - 157; Metazoa - 120; Fungi - 46; Plants - 448; Viruses - 15; Other Eukaryotes - 132 (source: NCBI BLink).  protein_id AT1G24485.2p  transcript_id AT1G24485.2  protein_id AT1G24485.2p  transcript_id AT1G24485.2  
At1g24485	chr1:008678858	0.0	W/8678858-8678939,8679034-8679559,8679857-8680464,8681004-8681063,8681326-8681479,8681600-8681894	AT1G24485.3  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: protein kinase-related (TAIR:AT3G46280.1).  protein_id AT1G24485.3p  transcript_id AT1G24485.3  protein_id AT1G24485.3p  transcript_id AT1G24485.3  
At1g24485	chr1:008678858	0.0	W/8678858-8678939,8679034-8679559,8679857-8680464,8681326-8681475,8681600-8681670	AT1G24485.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: protein kinase-related (TAIR:AT3G46280.1); Has 842 Blast hits to 816 proteins in 138 species: Archae - 2; Bacteria - 146; Metazoa - 81; Fungi - 37; Plants - 455; Viruses - 2; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT1G24485.1p  transcript_id AT1G24485.1  protein_id AT1G24485.1p  transcript_id AT1G24485.1  
At1g24490	chr1:008682364	0.0	W/8682364-8682690,8682773-8682883,8682966-8683040,8683284-8683344,8683430-8683503,8683593-8683697,8683887-8683994,8684170-8684273,8684353-8684583,8684663-8684966	AT1G24490.1  CDS  gene_syn ALB4, ALBINA 4, F21J9.16  gene ALB4  function Homologue of the Alb3/Oxa1/YidC family. ALB4 is almost identical to the Alb3/Oxa1/YidC domain of the previously described 110 kDa inner envelope protein ARTEMIS. However, ALB4 is expressed as a separate 55 kDa protein and is located in the thylakoid membrane of chloroplasts. Analysis of a T-DNA insertion line with a reduced level of Alb4 revealed chloroplasts with an altered ultrastructure. Mutant plastids are larger, more spherical in appearance and the grana stacks within the mutant lines are less appressed than in the wild-type chloroplasts. ALB4 is required for proper chloroplast biogenesis.  go_component chloroplast thylakoid membrane|GO:0009535|16595657|IDA  go_component membrane|GO:0016020||ISS  go_process signal transduction|GO:0007165||ISS  go_process chloroplast organization|GO:0009658|16595657|IMP  go_function molecular_function|GO:0003674||ND  product ALB4 (ALBINA 4)  note ALBINA 4 (ALB4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: signal transduction, chloroplast organization; LOCATED IN: chloroplast thylakoid membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 60 kDa inner membrane insertion protein (InterPro:IPR001708); BEST Arabidopsis thaliana protein match is: ALB3 (ALBINO 3); P-P-bond-hydrolysis-driven protein transmembrane transporter (TAIR:AT2G28800.1); Has 5822 Blast hits to 5810 proteins in 1420 species: Archae - 0; Bacteria - 3056; Metazoa - 138; Fungi - 38; Plants - 87; Viruses - 0; Other Eukaryotes - 2503 (source: NCBI BLink).  protein_id AT1G24490.1p  transcript_id AT1G24490.1  protein_id AT1G24490.1p  transcript_id AT1G24490.1  
At1g24490	chr1:008682364	0.0	W/8682364-8682690,8682966-8683040,8683284-8683344,8683430-8683503,8683593-8683697,8683887-8683994,8684170-8684273,8684353-8684583,8684663-8684966	AT1G24490.2  CDS  gene_syn ALB4, ALBINA 4, F21J9.16  gene ALB4  function Homologue of the Alb3/Oxa1/YidC family. ALB4 is almost identical to the Alb3/Oxa1/YidC domain of the previously described 110 kDa inner envelope protein ARTEMIS. However, ALB4 is expressed as a separate 55 kDa protein and is located in the thylakoid membrane of chloroplasts. Analysis of a T-DNA insertion line with a reduced level of Alb4 revealed chloroplasts with an altered ultrastructure. Mutant plastids are larger, more spherical in appearance and the grana stacks within the mutant lines are less appressed than in the wild-type chloroplasts. ALB4 is required for proper chloroplast biogenesis.  go_component chloroplast thylakoid membrane|GO:0009535|16595657|IDA  go_component membrane|GO:0016020||ISS  go_process signal transduction|GO:0007165||ISS  go_process chloroplast organization|GO:0009658|16595657|IMP  go_function molecular_function|GO:0003674||ND  product ALB4 (ALBINA 4)  note ALBINA 4 (ALB4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: signal transduction, chloroplast organization; LOCATED IN: chloroplast thylakoid membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 60 kDa inner membrane insertion protein (InterPro:IPR001708); BEST Arabidopsis thaliana protein match is: ALB3 (ALBINO 3); P-P-bond-hydrolysis-driven protein transmembrane transporter (TAIR:AT2G28800.1).  protein_id AT1G24490.2p  transcript_id AT1G24490.2  protein_id AT1G24490.2p  transcript_id AT1G24490.2  
At1g24510	chr1:008687371	0.0	C/8687371-8687660,8686919-8687267,8686643-8686775,8686509-8686561,8686314-8686416,8685974-8686140,8685757-8685870,8685504-8685674	AT1G24510.2  CDS  gene_syn F21J9.17  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein folding|GO:0006457||IEA  go_process cellular protein metabolic process|GO:0044267||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function unfolded protein binding|GO:0051082||IEA  product T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative  note T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative; FUNCTIONS IN: unfolded protein binding, protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, epsilon subunit (InterPro:IPR012718), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: chaperonin, putative (TAIR:AT3G18190.1); Has 8554 Blast hits to 8515 proteins in 1645 species: Archae - 391; Bacteria - 3113; Metazoa - 1755; Fungi - 811; Plants - 329; Viruses - 0; Other Eukaryotes - 2155 (source: NCBI BLink).  protein_id AT1G24510.2p  transcript_id AT1G24510.2  protein_id AT1G24510.2p  transcript_id AT1G24510.2  
At1g24510	chr1:008687903	0.0	C/8687903-8688101,8687371-8687689,8686919-8687267,8686643-8686775,8686509-8686561,8686314-8686416,8685974-8686140,8685757-8685870,8685504-8685674	AT1G24510.1  CDS  gene_syn F21J9.17  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein folding|GO:0006457||IEA  go_process cellular protein metabolic process|GO:0044267||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function unfolded protein binding|GO:0051082||IEA  product T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative  note T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative; FUNCTIONS IN: unfolded protein binding, protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, epsilon subunit (InterPro:IPR012718), Chaperonin Cpn60 (InterPro:IPR001844), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: chaperonin, putative (TAIR:AT3G18190.1); Has 13238 Blast hits to 13142 proteins in 2425 species: Archae - 394; Bacteria - 5650; Metazoa - 1832; Fungi - 993; Plants - 479; Viruses - 0; Other Eukaryotes - 3890 (source: NCBI BLink).  protein_id AT1G24510.1p  transcript_id AT1G24510.1  protein_id AT1G24510.1p  transcript_id AT1G24510.1  
At1g24520	chr1:008688699	0.0	W/8688699-8689058	AT1G24520.1  CDS  gene_syn BCP1, F21J9.18, F21J9_18  gene BCP1  function Male fertility gene acting on tapetum and microspore  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process pollen sperm cell differentiation|GO:0048235|7892232|IMP  go_function molecular_function|GO:0003674||ND  product BCP1  note BCP1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen sperm cell differentiation; LOCATED IN: anchored to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; Has 45 Blast hits to 33 proteins in 7 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 2; Plants - 23; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G24520.1p  transcript_id AT1G24520.1  protein_id AT1G24520.1p  transcript_id AT1G24520.1  
At1g24530	chr1:008693287	0.0	W/8693287-8694543	AT1G24530.1  CDS  gene_syn F21J9.19  go_component plasma membrane|GO:0005886|17317660|IDA  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, heterotrimeric G-protein complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT1G24130.1); Has 34934 Blast hits to 16363 proteins in 585 species: Archae - 32; Bacteria - 4633; Metazoa - 14827; Fungi - 7171; Plants - 3064; Viruses - 0; Other Eukaryotes - 5207 (source: NCBI BLink).  protein_id AT1G24530.1p  transcript_id AT1G24530.1  protein_id AT1G24530.1p  transcript_id AT1G24530.1  
At1g24540	chr1:008699751	0.0	W/8699751-8701319	AT1G24540.1  CDS  gene_syn CYP86C1, F21J9.20  gene CYP86C1  function member of CYP86C  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP86C1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP86C1; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, petal, sepal, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP86C2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G26125.1); Has 20814 Blast hits to 20754 proteins in 1084 species: Archae - 19; Bacteria - 1466; Metazoa - 9672; Fungi - 3993; Plants - 4880; Viruses - 3; Other Eukaryotes - 781 (source: NCBI BLink).  protein_id AT1G24540.1p  transcript_id AT1G24540.1  protein_id AT1G24540.1p  transcript_id AT1G24540.1  
At1g24560	chr1:008702644	0.0	W/8702644-8704023,8704106-8704182,8704601-8704712,8704841-8704957,8705290-8705640	AT1G24560.1  CDS  gene_syn F21J9.22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49055.1); Has 56279 Blast hits to 28796 proteins in 1542 species: Archae - 818; Bacteria - 6598; Metazoa - 28656; Fungi - 4716; Plants - 2272; Viruses - 181; Other Eukaryotes - 13038 (source: NCBI BLink).  protein_id AT1G24560.1p  transcript_id AT1G24560.1  protein_id AT1G24560.1p  transcript_id AT1G24560.1  
At1g24570	chr1:008707197	0.0	W/8707197-8707216,8707293-8707410,8707491-8707587,8707689-8707768,8707853-8707936,8708014-8708132,8708203-8708304,8708367-8708480,8708556-8708612,8708702-8708768,8708857-8708910,8709014-8709091,8709168-8709203,8709372-8709491	AT1G24570.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67850.2); Has 194 Blast hits to 193 proteins in 16 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 178; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G24570.1p  transcript_id AT1G24570.1  protein_id AT1G24570.1p  transcript_id AT1G24570.1  
At1g24580	chr1:008710232	0.0	W/8710232-8710573	AT1G24580.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G67856.1); Has 3887 Blast hits to 3876 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 1193; Fungi - 276; Plants - 1834; Viruses - 15; Other Eukaryotes - 569 (source: NCBI BLink).  protein_id AT1G24580.1p  transcript_id AT1G24580.1  protein_id AT1G24580.1p  transcript_id AT1G24580.1  
At1g24575	chr1:008711211	0.0	C/8711211-8711477	AT1G24575.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G24575.1p  transcript_id AT1G24575.1  protein_id AT1G24575.1p  transcript_id AT1G24575.1  
At1g24577	chr1:008712758	0.0	C/8712758-8712985	AT1G24577.1  CDS  product unknown protein  note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67910.1); Has 60 Blast hits to 60 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G24577.1p  transcript_id AT1G24577.1  protein_id AT1G24577.1p  transcript_id AT1G24577.1  
At1g24590	chr1:008714389	0.0	C/8714389-8715309	AT1G24590.1  CDS  gene_syn DORNROSCHEN-LIKE, DRN-LIKE, DRNL, ENHANCER OF SHOOT REGENERATION 2, ESR2, F21J9.25, FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, SOB2  gene DRNL  function Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and LEAFY PETIOLE. This gene functions in the regeneration of shoots in tissue culture, probably through transcriptional regulation of CUC1. May also be involved in activation of the cell cycle via CycD1;1.  go_component chloroplast|GO:0009507||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to auxin stimulus|GO:0009733|17376809|IEP  go_process embryonic pattern specification|GO:0009880|17376809|IMP  go_process regulation of transcription|GO:0045449|17056621|IMP  go_process cotyledon development|GO:0048825|17376809|IMP  go_process regulation of cell cycle|GO:0051726|17056621|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product DRNL (DORNROSCHEN-LIKE); DNA binding / transcription factor  note DORNROSCHEN-LIKE (DRNL); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: leaf primordium, embryo, seed; EXPRESSED DURING: C globular stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ESR1 (ENHANCER OF SHOOT REGENERATION 1); DNA binding / protein binding / transcription factor (TAIR:AT1G12980.1); Has 3587 Blast hits to 3530 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3580; Viruses - 2; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G24590.1p  transcript_id AT1G24590.1  protein_id AT1G24590.1p  transcript_id AT1G24590.1  
At1g24600	chr1:008720375	0.0	W/8720375-8720593	AT1G24600.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67920.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G24600.1p  transcript_id AT1G24600.1  protein_id AT1G24600.1p  transcript_id AT1G24600.1  
At1g24610	chr1:008722390	0.0	C/8722390-8722711,8721719-8722188,8721373-8721636,8720906-8721280	AT1G24610.1  CDS  gene_syn F21J9.27  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SET domain-containing protein  note SET domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), Rubisco LSMT substrate-binding (InterPro:IPR015353); BEST Arabidopsis thaliana protein match is: ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putative (TAIR:AT1G14030.1); Has 709 Blast hits to 708 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 226; Fungi - 188; Plants - 185; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT1G24610.1p  transcript_id AT1G24610.1  protein_id AT1G24610.1p  transcript_id AT1G24610.1  
At1g24620	chr1:008723893	0.0	C/8723893-8724453	AT1G24620.1  CDS  gene_syn F21J9.28  go_component nucleus|GO:0005634|14617066|IDA  go_function calcium ion binding|GO:0005509||IEA  go_process response to cold|GO:0009409|14617066|IEP  go_function calcium ion binding|GO:0005509||ISS  product polcalcin, putative / calcium-binding pollen allergen, putative  note polcalcin, putative / calcium-binding pollen allergen, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to cold; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding protein, putative (TAIR:AT1G18210.2); Has 22102 Blast hits to 14581 proteins in 1314 species: Archae - 0; Bacteria - 148; Metazoa - 9310; Fungi - 5302; Plants - 3745; Viruses - 2; Other Eukaryotes - 3595 (source: NCBI BLink).  protein_id AT1G24620.1p  transcript_id AT1G24620.1  protein_id AT1G24620.1p  transcript_id AT1G24620.1  
At1g24625	chr1:008726009	0.0	C/8726009-8726638	AT1G24625.1  CDS  gene_syn F21J9.29, ZFP7, ZINC FINGER PROTEIN 7  gene ZFP7  function Encodes a zinc finger protein containing only a single zinc finger.  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product ZFP7 (ZINC FINGER PROTEIN 7); nucleic acid binding / transcription factor/ zinc ion binding  note ZINC FINGER PROTEIN 7 (ZFP7); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: ZFP4 (ZINC FINGER PROTEIN 4); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT1G66140.1); Has 385 Blast hits to 383 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 382; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G24625.1p  transcript_id AT1G24625.1  protein_id AT1G24625.1p  transcript_id AT1G24625.1  
At1g24640	chr1:008729280	0.0	W/8729280-8732681	AT1G24640.1  mRNA_TE_gene  pseudo  gene_syn F5A9.24  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 4.3e-37 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)  
At1g24650	chr1:008734570	0.0	W/8734570-8736742,8736828-8737315	AT1G24650.1  CDS  gene_syn F5A9.23  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function protein kinase activity|GO:0004672||ISS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein / protein kinase family protein  note leucine-rich repeat family protein / protein kinase family protein; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT2G01820.1); Has 112935 Blast hits to 94481 proteins in 3424 species: Archae - 96; Bacteria - 9082; Metazoa - 41804; Fungi - 7349; Plants - 37395; Viruses - 383; Other Eukaryotes - 16826 (source: NCBI BLink).  protein_id AT1G24650.1p  transcript_id AT1G24650.1  protein_id AT1G24650.1p  transcript_id AT1G24650.1  
At1g24657	chr1:008737952	0.0	C/8737952-8738365	AT1G24657.1  pseudogenic_transcript  pseudo  function unknown pseudogene  
At1g24686	chr1:008740506	0.0	C/8740506-8740919	AT1G24686.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G09245  
At1g24706	chr1:008742210	0.0	W/8742210-8742344,8742441-8742566,8742677-8742718,8743209-8743268,8743835-8743897,8744104-8744184,8744538-8744609,8744677-8744724,8744831-8744899,8744987-8745120,8745782-8745857,8746171-8746364,8746779-8746859,8747014-8747218,8747297-8747524,8747607-8747687,8747777-8747896,8747985-8748044,8748521-8748648,8749298-8749394,8749471-8749599,8750010-8750113,8750417-8750597,8750728-8750894,8751082-8751688,8751792-8751896,8752096-8752255,8752379-8752455,8752526-8752918,8753379-8753586,8753670-8754475,8754716-8755026,8755177-8755243	AT1G24706.1  CDS  gene_syn F5A9.21, F5A9_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 25479 Blast hits to 15950 proteins in 654 species: Archae - 12; Bacteria - 897; Metazoa - 14432; Fungi - 3233; Plants - 1262; Viruses - 124; Other Eukaryotes - 5519 (source: NCBI BLink).  protein_id AT1G24706.1p  transcript_id AT1G24706.1  protein_id AT1G24706.1p  transcript_id AT1G24706.1  
At1g24733	chr1:008757069	0.0	W/8757069-8757362	AT1G24733.1  pseudogenic_transcript  pseudo  function pseudogene of CCoAMT (caffeoyl-CoA 3-O-methyltransferase)  
At1g24735	chr1:008757977	0.0	W/8757977-8758048,8758277-8758362,8758722-8758866,8758941-8759069,8759158-8759448	AT1G24735.1  CDS  gene_syn F5A9.20, F5A9_20  go_function O-methyltransferase activity|GO:0008171||IEA  go_component cytosol|GO:0005829|9484457|TAS  product O-methyltransferase  note O-methyltransferase; FUNCTIONS IN: O-methyltransferase activity; LOCATED IN: cytosol; EXPRESSED IN: stem, leaf apex, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: O-methyltransferase, family 3 (InterPro:IPR002935); BEST Arabidopsis thaliana protein match is: CCoAMT; caffeoyl-CoA O-methyltransferase (TAIR:AT1G67980.1); Has 3167 Blast hits to 3164 proteins in 699 species: Archae - 19; Bacteria - 1309; Metazoa - 141; Fungi - 43; Plants - 443; Viruses - 0; Other Eukaryotes - 1212 (source: NCBI BLink).  protein_id AT1G24735.1p  transcript_id AT1G24735.1  protein_id AT1G24735.1p  transcript_id AT1G24735.1  
At1g24764	chr1:008762992	0.0	C/8762992-8763256,8762832-8762917,8762275-8762340,8762017-8762187,8761748-8761918,8761508-8761663,8761273-8761419,8761087-8761158,8760459-8760998,8760161-8760348,8760001-8760043	AT1G24764.1  CDS  gene_syn ATMAP70-2, F5A9.19, F5A9_19, microtubule-associated proteins 70-2  gene ATMAP70-2  function Member of the MAP70 protein family.  go_component microtubule|GO:0005874|15860013|ISS  go_process cytoskeleton organization|GO:0007010|15860013|TAS  go_function microtubule binding|GO:0008017|15860013|ISS  product ATMAP70-2 (microtubule-associated proteins 70-2); microtubule binding  note microtubule-associated proteins 70-2 (ATMAP70-2); FUNCTIONS IN: microtubule binding; INVOLVED IN: cytoskeleton organization; LOCATED IN: microtubule; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Myosin II heavy chain-like (InterPro:IPR009768); BEST Arabidopsis thaliana protein match is: ATMAP70-1 (microtubule-associated proteins 70-1); microtubule binding (TAIR:AT1G68060.1); Has 37024 Blast hits to 22019 proteins in 1366 species: Archae - 430; Bacteria - 3816; Metazoa - 20244; Fungi - 2827; Plants - 1490; Viruses - 103; Other Eukaryotes - 8114 (source: NCBI BLink).  protein_id AT1G24764.1p  transcript_id AT1G24764.1  protein_id AT1G24764.1p  transcript_id AT1G24764.1  
At1g24792	chr1:008766060	0.0	W/8766060-8767096	AT1G24792.1  pseudogenic_transcript  pseudo  function pseudogene of UDP-3-O-acyl N-acetylglucosamine deacetylase family protein/F-box protein related  
At1g24793	chr1:008767581	0.0	W/8767581-8767682,8767784-8768092,8768280-8768486,8768576-8768677,8768772-8768832,8768903-8768922	AT1G24793.2  CDS  gene_syn F5A9.18  go_process lipid A biosynthetic process|GO:0009245||IEA  go_function UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity|GO:0008759||IEA  product UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase  note UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (TAIR:AT1G25210.2).  protein_id AT1G24793.2p  transcript_id AT1G24793.2  protein_id AT1G24793.2p  transcript_id AT1G24793.2  
At1g24793	chr1:008767581	0.0	W/8767581-8767682,8767784-8768092,8768280-8768486,8768576-8768677,8768772-8768836,8768903-8769047,8769157-8769207	AT1G24793.1  CDS  gene_syn F5A9.18  go_process lipid A biosynthetic process|GO:0009245||IEA  go_function UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity|GO:0008759||IEA  product UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase  note UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (TAIR:AT1G25210.1); Has 4068 Blast hits to 4068 proteins in 841 species: Archae - 0; Bacteria - 1767; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 2268 (source: NCBI BLink).  protein_id AT1G24793.1p  transcript_id AT1G24793.1  protein_id AT1G24793.1p  transcript_id AT1G24793.1  
At1g24800	chr1:008769741	0.0	W/8769741-8771042	AT1G24800.1  CDS  product unknown protein  note CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25211.1); Has 745 Blast hits to 722 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 743; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G24800.1p  transcript_id AT1G24800.1  protein_id AT1G24800.1p  transcript_id AT1G24800.1  
At1g24807	chr1:008773428	0.0	C/8773428-8773535,8772719-8772828,8772593-8772630,8772404-8772514,8772189-8772288,8771958-8772093,8771766-8771870	AT1G24807.1  CDS  gene_syn F5A9.17, F5A9_17  go_component chloroplast|GO:0009507|18431481|IDA  go_process glutamine metabolic process|GO:0006541||IEA  go_process metabolic process|GO:0008152||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function catalytic activity|GO:0003824||IEA  go_function anthranilate synthase activity|GO:0004049||IEA  product anthranilate synthase beta subunit, putative  note anthranilate synthase beta subunit, putative; FUNCTIONS IN: catalytic activity, anthranilate synthase activity; INVOLVED IN: glutamine metabolic process, biosynthetic process, metabolic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), Glutamine amidotransferase of anthranilate synthase (InterPro:IPR006221), Carbamoyl phosphate synthase, GATase region (InterPro:IPR001317), Glutamine amidotransferase type 1 (InterPro:IPR017926), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); BEST Arabidopsis thaliana protein match is: anthranilate synthase beta subunit, putative (TAIR:AT1G25155.1); Has 15273 Blast hits to 15273 proteins in 1883 species: Archae - 373; Bacteria - 7950; Metazoa - 353; Fungi - 454; Plants - 107; Viruses - 0; Other Eukaryotes - 6036 (source: NCBI BLink).  protein_id AT1G24807.1p  transcript_id AT1G24807.1  protein_id AT1G24807.1p  transcript_id AT1G24807.1  
At1g24825	chr1:008775901	0.0	W/8775901-8778045	AT1G24825.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G24822  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G24825.1  
At1g24825	chr1:008775929	0.0	W/8775929-8777418	AT1G24825.4  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G24822  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G24825.4  
At1g24825	chr1:008775936	0.0	W/8775936-8778000	AT1G24825.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G24822  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G24825.2  
At1g24825	chr1:008775950	0.0	W/8775950-8777439	AT1G24825.3  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G24822  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G24825.3  
At1g24822	chr1:008777813	0.0	C/8777813-8777882,8777039-8777371,8775130-8775293,8774997-8775080	AT1G24822.1  CDS  gene_syn F5A9.16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25097.1); Has 12 Blast hits to 12 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G24822.1p  transcript_id AT1G24822.1  protein_id AT1G24822.1p  transcript_id AT1G24822.1  
At1g24851	chr1:008778280	0.0	W/8778280-8779056	AT1G24851.1  CDS  gene_syn F5A9.15, F5A9_15  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25180.1); Has 6776 Blast hits to 1945 proteins in 246 species: Archae - 0; Bacteria - 273; Metazoa - 1475; Fungi - 655; Plants - 232; Viruses - 52; Other Eukaryotes - 4089 (source: NCBI BLink).  protein_id AT1G24851.1p  transcript_id AT1G24851.1  protein_id AT1G24851.1p  transcript_id AT1G24851.1  
At1g24879	chr1:008780844	0.0	W/8780844-8781536	AT1G24879.1  pseudogenic_transcript  pseudo  function pseudogene of UDP-3-O-acyl N-acetylglucosamine deacetylase family protein/F-box protein related  
At1g24880	chr1:008781961	0.0	W/8781961-8782062,8782164-8782472,8782660-8782865,8782955-8783056,8783151-8783215,8783282-8783426,8783536-8783586	AT1G24880.1  CDS  gene_syn F5A9.14, F5A9_14  go_process lipid A biosynthetic process|GO:0009245||IEA  go_function UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity|GO:0008759||IEA  product UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase  note UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (TAIR:AT1G25210.1); Has 3510 Blast hits to 3510 proteins in 829 species: Archae - 0; Bacteria - 1740; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 1735 (source: NCBI BLink).  protein_id AT1G24880.1p  transcript_id AT1G24880.1  protein_id AT1G24880.1p  transcript_id AT1G24880.1  
At1g24881	chr1:008784120	0.0	W/8784120-8785421	AT1G24881.1  CDS  product unknown protein  note CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25211.1); Has 745 Blast hits to 722 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 743; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G24881.1p  transcript_id AT1G24881.1  protein_id AT1G24881.1p  transcript_id AT1G24881.1  
At1g24909	chr1:008787807	0.0	C/8787807-8787914,8787098-8787168,8786972-8787009,8786783-8786893,8786568-8786667,8786337-8786472,8786145-8786249	AT1G24909.1  CDS  gene_syn F5A9.13  go_process glutamine metabolic process|GO:0006541||IEA  go_process metabolic process|GO:0008152||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function catalytic activity|GO:0003824||IEA  go_function anthranilate synthase activity|GO:0004049||IEA  product anthranilate synthase beta subunit, putative  note anthranilate synthase beta subunit, putative; FUNCTIONS IN: catalytic activity, anthranilate synthase activity; INVOLVED IN: glutamine metabolic process, biosynthetic process, metabolic process; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), Glutamine amidotransferase of anthranilate synthase (InterPro:IPR006221), Carbamoyl phosphate synthase, GATase region (InterPro:IPR001317), Glutamine amidotransferase type 1 (InterPro:IPR017926), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); BEST Arabidopsis thaliana protein match is: anthranilate synthase beta subunit, putative (TAIR:AT1G25155.1); Has 15672 Blast hits to 15672 proteins in 1899 species: Archae - 375; Bacteria - 8128; Metazoa - 354; Fungi - 458; Plants - 107; Viruses - 0; Other Eukaryotes - 6250 (source: NCBI BLink).  protein_id AT1G24909.1p  transcript_id AT1G24909.1  protein_id AT1G24909.1p  transcript_id AT1G24909.1  
At1g24938	chr1:008789376	0.0	C/8789376-8792080	AT1G24938.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35100.1)  
At1g24967	chr1:008793821	0.0	C/8793821-8797942	AT1G24967.1  mRNA_TE_gene  pseudo  gene_syn F5A9.11, F5A9_11  note Transposable element gene, Mutator-like transposase family, has a 1.2e-61 P-value blast match to Q9S9L6 /322-461 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g25054	chr1:008798556	0.0	W/8798556-8798584,8798672-8798706,8798814-8798867,8804478-8804590,8804692-8805000,8805188-8805394,8805484-8805585,8805680-8805744,8805811-8805955,8806065-8806115	AT1G25054.1  CDS  gene_syn F5A9.8, F5A9_8  go_process lipid A biosynthetic process|GO:0009245||IEA  go_function UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity|GO:0008759||IEA  go_process lipid A biosynthetic process|GO:0009245||ISS  go_function UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity|GO:0008759||ISS  product UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase  note UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (TAIR:AT1G25210.1); Has 4068 Blast hits to 4068 proteins in 841 species: Archae - 0; Bacteria - 1767; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 2268 (source: NCBI BLink).  protein_id AT1G25054.1p  transcript_id AT1G25054.1  protein_id AT1G25054.1p  transcript_id AT1G25054.1  
At1g24996	chr1:008800341	0.0	C/8800341-8800410,8799520-8799899	AT1G24996.1  CDS  gene_syn F5A9.10, F5A9_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25097.1); Has 11 Blast hits to 11 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G24996.1p  transcript_id AT1G24996.1  protein_id AT1G24996.1p  transcript_id AT1G24996.1  
At1g25025	chr1:008800808	0.0	W/8800808-8801584	AT1G25025.1  CDS  gene_syn F5A9.9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25180.1); Has 8089 Blast hits to 2360 proteins in 296 species: Archae - 0; Bacteria - 402; Metazoa - 1872; Fungi - 825; Plants - 256; Viruses - 82; Other Eukaryotes - 4652 (source: NCBI BLink).  protein_id AT1G25025.1p  transcript_id AT1G25025.1  protein_id AT1G25025.1p  transcript_id AT1G25025.1  
At1g25053	chr1:008803300	0.0	W/8803300-8804091	AT1G25053.1  pseudogenic_transcript  pseudo  function pseudogene of UDP-3-O-acyl N-acetylglucosamine deacetylase family protein/F-box protein related  
At1g25054	chr1:008804489	0.0	W/8804489-8804590,8804692-8805000,8805188-8805394,8805484-8805585,8805680-8805744,8805811-8805955,8806065-8806115	AT1G25054.2  CDS  gene_syn F5A9.8, F5A9_8  go_process lipid A biosynthetic process|GO:0009245||IEA  go_function UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity|GO:0008759||IEA  go_process lipid A biosynthetic process|GO:0009245||ISS  go_function UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity|GO:0008759||ISS  product UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase  note UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (TAIR:AT1G25210.1); Has 3771 Blast hits to 3771 proteins in 830 species: Archae - 0; Bacteria - 1746; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 1992 (source: NCBI BLink).  protein_id AT1G25054.2p  transcript_id AT1G25054.2  protein_id AT1G25054.2p  transcript_id AT1G25054.2  
At1g25055	chr1:008806649	0.0	W/8806649-8807950	AT1G25055.1  CDS  product unknown protein  note CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25211.1); Has 745 Blast hits to 722 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 743; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G25055.1p  transcript_id AT1G25055.1  protein_id AT1G25055.1p  transcript_id AT1G25055.1  
At1g25083	chr1:008810336	0.0	C/8810336-8810443,8809627-8809697,8809501-8809538,8809312-8809422,8809097-8809196,8808866-8809001,8808674-8808778	AT1G25083.1  CDS  gene_syn F5A9.7  go_process glutamine metabolic process|GO:0006541||IEA  go_process metabolic process|GO:0008152||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function catalytic activity|GO:0003824||IEA  go_function anthranilate synthase activity|GO:0004049||IEA  product anthranilate synthase beta subunit, putative  note anthranilate synthase beta subunit, putative; FUNCTIONS IN: catalytic activity, anthranilate synthase activity; INVOLVED IN: glutamine metabolic process, biosynthetic process, metabolic process; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), Glutamine amidotransferase of anthranilate synthase (InterPro:IPR006221), Carbamoyl phosphate synthase, GATase region (InterPro:IPR001317), Glutamine amidotransferase type 1 (InterPro:IPR017926), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); BEST Arabidopsis thaliana protein match is: anthranilate synthase beta subunit, putative (TAIR:AT1G25155.1); Has 15672 Blast hits to 15672 proteins in 1899 species: Archae - 375; Bacteria - 8128; Metazoa - 354; Fungi - 458; Plants - 107; Viruses - 0; Other Eukaryotes - 6250 (source: NCBI BLink).  protein_id AT1G25083.1p  transcript_id AT1G25083.1  protein_id AT1G25083.1p  transcript_id AT1G25083.1  
At1g25098	chr1:008812811	0.0	W/8812811-8814450	AT1G25098.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G25097  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G25098.2  
At1g25098	chr1:008812822	0.0	W/8812822-8814342	AT1G25098.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G25097  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G25098.1  
At1g25097	chr1:008814719	0.0	C/8814719-8814788,8813945-8814277,8812038-8812201,8811905-8811988	AT1G25097.1  CDS  gene_syn F5A9.6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24822.1); Has 12 Blast hits to 12 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G25097.1p  transcript_id AT1G25097.1  protein_id AT1G25097.1p  transcript_id AT1G25097.1  
At1g25112	chr1:008815186	0.0	W/8815186-8815962	AT1G25112.1  CDS  gene_syn F5A9.5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25180.1); Has 8089 Blast hits to 2360 proteins in 296 species: Archae - 0; Bacteria - 402; Metazoa - 1872; Fungi - 825; Plants - 256; Viruses - 82; Other Eukaryotes - 4652 (source: NCBI BLink).  protein_id AT1G25112.1p  transcript_id AT1G25112.1  protein_id AT1G25112.1p  transcript_id AT1G25112.1  
At1g25141	chr1:008817678	0.0	W/8817678-8818316,8818406-8818469,8818856-8818968,8819070-8819378,8819566-8819772,8819862-8819963,8820058-8820122,8820189-8820221,8821026-8821222,8821280-8822328	AT1G25141.1  CDS  gene_syn F5A9.4  go_process lipid A biosynthetic process|GO:0009245||IEA  go_function UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity|GO:0008759||IEA  product UDP-3-0-acyl N-acetylglucosamine deacetylase family protein / F-box protein-related  note UDP-3-0-acyl N-acetylglucosamine deacetylase family protein / F-box protein-related; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25211.1); Has 5034 Blast hits to 4600 proteins in 857 species: Archae - 0; Bacteria - 1746; Metazoa - 0; Fungi - 0; Plants - 1275; Viruses - 0; Other Eukaryotes - 2013 (source: NCBI BLink).  protein_id AT1G25141.1p  transcript_id AT1G25141.1  protein_id AT1G25141.1p  transcript_id AT1G25141.1  
At1g25155	chr1:008824714	0.0	C/8824714-8824821,8824005-8824075,8823879-8823916,8823690-8823800,8823475-8823574,8823244-8823379,8823052-8823156	AT1G25155.1  CDS  gene_syn F5A9.3  go_process glutamine metabolic process|GO:0006541||IEA  go_process metabolic process|GO:0008152||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function catalytic activity|GO:0003824||IEA  go_function anthranilate synthase activity|GO:0004049||IEA  product anthranilate synthase beta subunit, putative  note anthranilate synthase beta subunit, putative; FUNCTIONS IN: catalytic activity, anthranilate synthase activity; INVOLVED IN: glutamine metabolic process, biosynthetic process, metabolic process; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), Glutamine amidotransferase of anthranilate synthase (InterPro:IPR006221), Carbamoyl phosphate synthase, GATase region (InterPro:IPR001317), Glutamine amidotransferase type 1 (InterPro:IPR017926), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); BEST Arabidopsis thaliana protein match is: anthranilate synthase beta subunit, putative (TAIR:AT1G25083.1); Has 15672 Blast hits to 15672 proteins in 1899 species: Archae - 375; Bacteria - 8128; Metazoa - 354; Fungi - 458; Plants - 107; Viruses - 0; Other Eukaryotes - 6250 (source: NCBI BLink).  protein_id AT1G25155.1p  transcript_id AT1G25155.1  protein_id AT1G25155.1p  transcript_id AT1G25155.1  
At1g25175	chr1:008827286	0.0	W/8827286-8829320	AT1G25175.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G25175.1  
At1g25180	chr1:008829564	0.0	W/8829564-8830340	AT1G25180.1  CDS  gene_syn F5A9.1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25112.1); Has 8089 Blast hits to 2360 proteins in 296 species: Archae - 0; Bacteria - 402; Metazoa - 1872; Fungi - 825; Plants - 256; Viruses - 82; Other Eukaryotes - 4652 (source: NCBI BLink).  protein_id AT1G25180.1p  transcript_id AT1G25180.1  protein_id AT1G25180.1p  transcript_id AT1G25180.1  
At1g25209	chr1:008831724	0.0	W/8831724-8832760	AT1G25209.1  pseudogenic_transcript  pseudo  function pseudogene of UDP-3-O-acyl N-acetylglucosamine deacetylase family protein/F-box protein related  
At1g25210	chr1:008833245	0.0	W/8833245-8833346,8833448-8833756,8833944-8834150,8834240-8834341,8834436-8834496,8834567-8834586	AT1G25210.2  CDS  go_process lipid A biosynthetic process|GO:0009245||IEA  go_function UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity|GO:0008759||IEA  go_process lipid A biosynthetic process|GO:0009245||ISS  go_function UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity|GO:0008759||ISS  product UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase  note UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (TAIR:AT1G24793.2); Has 3771 Blast hits to 3771 proteins in 830 species: Archae - 0; Bacteria - 1746; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 1992 (source: NCBI BLink).  protein_id AT1G25210.2p  transcript_id AT1G25210.2  protein_id AT1G25210.2p  transcript_id AT1G25210.2  
At1g25210	chr1:008833245	0.0	W/8833245-8833346,8833448-8833756,8833944-8834150,8834240-8834341,8834436-8834500,8834567-8834711,8834821-8834871	AT1G25210.1  CDS  go_process lipid A biosynthetic process|GO:0009245||IEA  go_function UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity|GO:0008759||IEA  go_process lipid A biosynthetic process|GO:0009245||ISS  go_function UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity|GO:0008759||ISS  product UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase  note UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (TAIR:AT1G25054.2); Has 4068 Blast hits to 4068 proteins in 841 species: Archae - 0; Bacteria - 1767; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 2268 (source: NCBI BLink).  protein_id AT1G25210.1p  transcript_id AT1G25210.1  protein_id AT1G25210.1p  transcript_id AT1G25210.1  
At1g25211	chr1:008835405	0.0	W/8835405-8836706	AT1G25211.1  CDS  product unknown protein  note CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25055.1); Has 745 Blast hits to 722 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 743; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G25211.1p  transcript_id AT1G25211.1  protein_id AT1G25211.1p  transcript_id AT1G25211.1  
At1g25220	chr1:008839373	0.0	C/8839373-8839478,8839116-8839279,8838395-8838465,8838269-8838306,8838062-8838172,8837847-8837946,8837622-8837757,8837430-8837534	AT1G25220.1  CDS  gene_syn ANTHRANILATE SYNTHASE BETA SUBUNIT, ANTHRANILATE SYNTHASE BETA SUBUNIT 1, ASB1, F4F7.39, F4F7_39, TRP4, TRYPTOPHAN BIOSYNTHESIS 4, WEAK ETHYLENE INSENSITIVE7, WEI7  gene ASB1  function Catalyzes the first step of tryptophan biosynthesis: Chorismate L-Glutamine = Anthranilate Pyruvate L-Glutamate. Functions as a heterocomplex with anthranilate synthase alpha subunit (ASA1 or ASA2).  go_component chloroplast|GO:0009507||IEA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process tryptophan biosynthetic process|GO:0000162|8400875|TAS  go_process response to bacterium|GO:0009617|8400875|IEP  go_process response to ethylene stimulus|GO:0009723|15980261|IGI  go_process auxin biosynthetic process|GO:0009851|15980261|IGI  go_process lateral root primordium development|GO:0010386|18435826|IMP  go_function anthranilate synthase activity|GO:0004049|8400875|IGI  product ASB1 (ANTHRANILATE SYNTHASE BETA SUBUNIT 1); anthranilate synthase  note ANTHRANILATE SYNTHASE BETA SUBUNIT 1 (ASB1); FUNCTIONS IN: anthranilate synthase activity; INVOLVED IN: in 6 processes; LOCATED IN: chloroplast; EXPRESSED IN: pericycle, cotyledon vascular system, primary root tip, root, lateral root primordium; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), Glutamine amidotransferase of anthranilate synthase (InterPro:IPR006221), Carbamoyl phosphate synthase, GATase region (InterPro:IPR001317), Glutamine amidotransferase type 1 (InterPro:IPR017926), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); BEST Arabidopsis thaliana protein match is: anthranilate synthase beta subunit, putative (TAIR:AT5G57890.1); Has 15863 Blast hits to 15863 proteins in 1908 species: Archae - 378; Bacteria - 8202; Metazoa - 372; Fungi - 465; Plants - 108; Viruses - 0; Other Eukaryotes - 6338 (source: NCBI BLink).  protein_id AT1G25220.1p  transcript_id AT1G25220.1  protein_id AT1G25220.1p  transcript_id AT1G25220.1  
At1g25230	chr1:008842095	0.0	C/8842095-8842298,8841870-8842026,8841666-8841773,8841410-8841537,8841188-8841316,8840809-8840876,8840474-8840699	AT1G25230.1  CDS  gene_syn F4F7.38, F4F7_38  go_component endomembrane system|GO:0012505||IEA  go_function hydrolase activity|GO:0016787||IEA  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product purple acid phosphatase family protein  note purple acid phosphatase family protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: PAP3 (PURPLE ACID PHOSPHATASE 3); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT1G14700.1); Has 873 Blast hits to 869 proteins in 210 species: Archae - 0; Bacteria - 175; Metazoa - 324; Fungi - 6; Plants - 91; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink).  protein_id AT1G25230.1p  transcript_id AT1G25230.1  protein_id AT1G25230.1p  transcript_id AT1G25230.1  
At1g25240	chr1:008845231	0.0	W/8845231-8846361	AT1G25240.1  CDS  gene_syn F4F7.37, F4F7_37  go_component mitochondrion|GO:0005739||IEA  go_component clathrin coat|GO:0030118||IEA  go_process clathrin coat assembly|GO:0048268||IEA  go_function phospholipid binding|GO:0005543||IEA  go_function phosphatidylinositol binding|GO:0005545||IEA  go_function clathrin binding|GO:0030276||IEA  go_function binding|GO:0005488||ISS  product epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related  note epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related; FUNCTIONS IN: phospholipid binding, clathrin binding, binding, phosphatidylinositol binding; INVOLVED IN: clathrin coat assembly; LOCATED IN: clathrin coat, mitochondrion; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), Clathrin adaptor, phosphoinositide-binding, GAT-like (InterPro:IPR014712), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (TAIR:AT1G68110.1); Has 280 Blast hits to 257 proteins in 39 species: Archae - 1; Bacteria - 2; Metazoa - 79; Fungi - 4; Plants - 193; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G25240.1p  transcript_id AT1G25240.1  protein_id AT1G25240.1p  transcript_id AT1G25240.1  
At1g25250	chr1:008849549	0.0	W/8849549-8849599,8849838-8850250,8850896-8851520	AT1G25250.1  CDS  gene_syn Arabidopsis thaliana Indeterminate(ID)-Domain 16, AtIDD16, F4F7.36, F4F7_36  gene AtIDD16  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product AtIDD16 (Arabidopsis thaliana Indeterminate(ID)-Domain 16); nucleic acid binding / transcription factor/ zinc ion binding  note Arabidopsis thaliana Indeterminate(ID)-Domain 16 (AtIDD16); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: AtIDD14 (Arabidopsis thaliana Indeterminate(ID)-Domain 14); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT1G68130.1); Has 27940 Blast hits to 13404 proteins in 248 species: Archae - 1; Bacteria - 28; Metazoa - 26584; Fungi - 117; Plants - 396; Viruses - 9; Other Eukaryotes - 805 (source: NCBI BLink).  protein_id AT1G25250.1p  transcript_id AT1G25250.1  protein_id AT1G25250.1p  transcript_id AT1G25250.1  
At1g25260	chr1:008855739	0.0	C/8855739-8855766,8855321-8855486,8855152-8855242,8855000-8855058,8854804-8854864,8854556-8854646,8854379-8854455,8854163-8854297	AT1G25260.1  CDS  gene_syn F4F7.35, F4F7_35  go_process ribosome biogenesis|GO:0042254||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic ribosome|GO:0022626|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product acidic ribosomal protein P0-related  note acidic ribosomal protein P0-related; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L10 (InterPro:IPR001790); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P0 (RPP0C) (TAIR:AT3G11250.1); Has 809 Blast hits to 807 proteins in 249 species: Archae - 78; Bacteria - 0; Metazoa - 294; Fungi - 172; Plants - 102; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).  protein_id AT1G25260.1p  transcript_id AT1G25260.1  protein_id AT1G25260.1p  transcript_id AT1G25260.1  
At1g25270	chr1:008857726	0.0	W/8857726-8857889,8858083-8858145,8858378-8858494,8858938-8859184,8859278-8859436,8859505-8859656,8859744-8859909	AT1G25270.1  CDS  gene_syn F4F7.34, F4F7_34  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  product unknown protein  note LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT1G68170.1); Has 1288 Blast hits to 1274 proteins in 251 species: Archae - 4; Bacteria - 491; Metazoa - 4; Fungi - 8; Plants - 639; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink).  protein_id AT1G25270.1p  transcript_id AT1G25270.1  protein_id AT1G25270.1p  transcript_id AT1G25270.1  
At1g25275	chr1:008860719	0.0	W/8860719-8860860,8860949-8860999,8861125-8861156	AT1G25275.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G25275.1p  transcript_id AT1G25275.1  protein_id AT1G25275.1p  transcript_id AT1G25275.1  
At1g25275	chr1:008860719	0.0	W/8860719-8860860,8860949-8861032,8861125-8861156	AT1G25275.3  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G25275.3p  transcript_id AT1G25275.3  protein_id AT1G25275.3p  transcript_id AT1G25275.3  
At1g25275	chr1:008860719	0.0	W/8860719-8860864,8860953-8860999,8861125-8861156	AT1G25275.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G25275.2p  transcript_id AT1G25275.2  protein_id AT1G25275.2p  transcript_id AT1G25275.2  
At1g25280	chr1:008864961	0.0	W/8864961-8865326,8865425-8865512,8865596-8865728,8865858-8866608	AT1G25280.1  CDS  gene_syn AtTLP10, F4F7.33, F4F7_33, TUBBY LIKE PROTEIN 10  gene AtTLP10  function Member of TLP family  go_component plasma membrane|GO:0005886|17317660|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function phosphoric diester hydrolase activity|GO:0008081||ISS  product AtTLP10 (TUBBY LIKE PROTEIN 10); phosphoric diester hydrolase/ transcription factor  note TUBBY LIKE PROTEIN 10 (AtTLP10); FUNCTIONS IN: transcription factor activity, phosphoric diester hydrolase activity; INVOLVED IN: regulation of transcription; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: AtTLP1 (TUBBY LIKE PROTEIN 1); phosphoric diester hydrolase/ transcription factor (TAIR:AT1G76900.2); Has 685 Blast hits to 671 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 293; Fungi - 2; Plants - 313; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT1G25280.1p  transcript_id AT1G25280.1  protein_id AT1G25280.1p  transcript_id AT1G25280.1  
At1g25280	chr1:008865676	0.0	W/8865676-8865728,8865858-8866608	AT1G25280.2  CDS  gene_syn AtTLP10, F4F7.33, F4F7_33, TUBBY LIKE PROTEIN 10  gene AtTLP10  function Member of TLP family  go_component plasma membrane|GO:0005886|17317660|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function phosphoric diester hydrolase activity|GO:0008081||ISS  product AtTLP10 (TUBBY LIKE PROTEIN 10); phosphoric diester hydrolase/ transcription factor  note TUBBY LIKE PROTEIN 10 (AtTLP10); FUNCTIONS IN: transcription factor activity, phosphoric diester hydrolase activity; INVOLVED IN: regulation of transcription; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: AtTLP1 (TUBBY LIKE PROTEIN 1); phosphoric diester hydrolase/ transcription factor (TAIR:AT1G76900.2); Has 670 Blast hits to 659 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 291; Fungi - 2; Plants - 302; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT1G25280.2p  transcript_id AT1G25280.2  protein_id AT1G25280.2p  transcript_id AT1G25280.2  
At1g25280	chr1:008865676	0.0	W/8865676-8865728,8865858-8866608	AT1G25280.3  CDS  gene_syn AtTLP10, F4F7.33, F4F7_33, TUBBY LIKE PROTEIN 10  gene AtTLP10  function Member of TLP family  go_component plasma membrane|GO:0005886|17317660|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function phosphoric diester hydrolase activity|GO:0008081||ISS  product AtTLP10 (TUBBY LIKE PROTEIN 10); phosphoric diester hydrolase/ transcription factor  note TUBBY LIKE PROTEIN 10 (AtTLP10); FUNCTIONS IN: transcription factor activity, phosphoric diester hydrolase activity; INVOLVED IN: regulation of transcription; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: AtTLP1 (TUBBY LIKE PROTEIN 1); phosphoric diester hydrolase/ transcription factor (TAIR:AT1G76900.2); Has 670 Blast hits to 659 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 291; Fungi - 2; Plants - 302; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT1G25280.3p  transcript_id AT1G25280.3  protein_id AT1G25280.3p  transcript_id AT1G25280.3  
At1g25290	chr1:008867157	0.0	W/8867157-8867309,8867436-8867698,8867851-8867905,8867977-8868057,8868139-8868235,8868309-8868397,8868494-8868592,8868661-8868702,8868793-8868945	AT1G25290.1  CDS  gene_syn ARABIDOPSIS RHOMBOID-LIKE PROTEIN 10, ATRBL10, F4F7.32, F4F7_32  gene ATRBL10  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ATRBL10 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 10)  note ARABIDOPSIS RHOMBOID-LIKE PROTEIN 10 (ATRBL10); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: ATRBL5 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5) (TAIR:AT1G52580.1); Has 3072 Blast hits to 3072 proteins in 967 species: Archae - 65; Bacteria - 1888; Metazoa - 196; Fungi - 96; Plants - 174; Viruses - 0; Other Eukaryotes - 653 (source: NCBI BLink).  protein_id AT1G25290.1p  transcript_id AT1G25290.1  protein_id AT1G25290.1p  transcript_id AT1G25290.1  
At1g25300	chr1:008871568	0.0	W/8871568-8872386	AT1G25300.1  CDS  gene_syn F4F7.31, F4F7_31  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product octicosapeptide/Phox/Bem1p (PB1) domain-containing protein  note octicosapeptide/Phox/Bem1p (PB1) domain-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (TAIR:AT3G18230.1); Has 175 Blast hits to 175 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 175; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G25300.1p  transcript_id AT1G25300.1  protein_id AT1G25300.1p  transcript_id AT1G25300.1  
At1g25310	chr1:008874607	0.0	C/8874607-8874834,8874454-8874519,8874305-8874364,8874124-8874207	AT1G25310.1  CDS  gene_syn F4F7.30, F4F7_30, MEE8, maternal effect embryo arrest 8  gene MEE8  go_component nucleus|GO:0005634||IEA  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product MEE8 (maternal effect embryo arrest 8); DNA binding / transcription factor  note maternal effect embryo arrest 8 (MEE8); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092); Has 68 Blast hits to 68 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G25310.1p  transcript_id AT1G25310.1  protein_id AT1G25310.1p  transcript_id AT1G25310.1  
At1g25320	chr1:008877988	0.0	W/8877988-8879461,8879546-8880180	AT1G25320.1  CDS  gene_syn F4F7.29, F4F7_29  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT2G01210.1); Has 95576 Blast hits to 66410 proteins in 1901 species: Archae - 63; Bacteria - 6325; Metazoa - 32525; Fungi - 3938; Plants - 41244; Viruses - 206; Other Eukaryotes - 11275 (source: NCBI BLink).  protein_id AT1G25320.1p  transcript_id AT1G25320.1  protein_id AT1G25320.1p  transcript_id AT1G25320.1  
At1g25330	chr1:008881829	0.0	C/8881829-8882018,8881575-8881744,8881423-8881488,8880885-8880953,8880697-8880777,8880515-8880610	AT1G25330.1  CDS  gene_syn F4F7.28, F4F7_28  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BEE1 (BR Enhanced Expression 1); transcription factor (TAIR:AT1G18400.1); Has 1096 Blast hits to 1096 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 37; Fungi - 28; Plants - 1031; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G25330.1p  transcript_id AT1G25330.1  protein_id AT1G25330.1p  transcript_id AT1G25330.1  
At1g25340	chr1:008885210	0.0	W/8885210-8885360,8885491-8885620,8885701-8886271	AT1G25340.1  CDS  gene_syn AtMYB116, F4F7.27, F4F7_27, MYB116, myb domain protein 116  gene MYB116  function putative transcription factor (MYB116)  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product MYB116 (myb domain protein 116); DNA binding / transcription factor  note myb domain protein 116 (MYB116); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: petal, sepal; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB62 (myb domain protein 62); DNA binding / transcription factor (TAIR:AT1G68320.1); Has 6214 Blast hits to 5713 proteins in 346 species: Archae - 0; Bacteria - 0; Metazoa - 674; Fungi - 242; Plants - 3716; Viruses - 6; Other Eukaryotes - 1576 (source: NCBI BLink).  protein_id AT1G25340.1p  transcript_id AT1G25340.1  protein_id AT1G25340.1p  transcript_id AT1G25340.1  
At1g25340	chr1:008885210	0.0	W/8885210-8885360,8885506-8885620,8885701-8886271	AT1G25340.2  CDS  gene_syn AtMYB116, F4F7.27, F4F7_27, MYB116, myb domain protein 116  gene MYB116  function putative transcription factor (MYB116)  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product MYB116 (myb domain protein 116); DNA binding / transcription factor  note myb domain protein 116 (MYB116); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: petal, sepal; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB62 (myb domain protein 62); DNA binding / transcription factor (TAIR:AT1G68320.1); Has 6043 Blast hits to 5658 proteins in 349 species: Archae - 0; Bacteria - 0; Metazoa - 618; Fungi - 261; Plants - 3638; Viruses - 6; Other Eukaryotes - 1520 (source: NCBI BLink).  protein_id AT1G25340.2p  transcript_id AT1G25340.2  protein_id AT1G25340.2p  transcript_id AT1G25340.2  
At1g25350	chr1:008894074	0.0	C/8894074-8894205,8893743-8893793,8893581-8893652,8893375-8893474,8893108-8893203,8892906-8892967,8892709-8892816,8892534-8892626,8892124-8892276,8891967-8892022,8891761-8891851,8891589-8891675,8891240-8891437,8891052-8891150,8890741-8890872,8890510-8890646,8890223-8890418,8890047-8890147,8889850-8889955,8889684-8889773,8889466-8889598,8889280-8889374	AT1G25350.1  CDS  gene_syn F4F7.26, F4F7_26, OVA9, ovule abortion 9  gene OVA9  go_component cytosol|GO:0005829|16297076|ISS  go_process translation|GO:0006412|9746349|TAS  go_process glutamyl-tRNA aminoacylation|GO:0006424|16297076|ISS  go_process ovule development|GO:0048481|16297076|IMP  go_function glutamine-tRNA ligase activity|GO:0004819|16297076|ISS  product OVA9 (ovule abortion 9); glutamine-tRNA ligase  note ovule abortion 9 (OVA9); FUNCTIONS IN: glutamine-tRNA ligase activity; INVOLVED IN: glutamyl-tRNA aminoacylation, translation, ovule development; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Glutamyl/glutaminyl-tRNA synthetase, class Ic (InterPro:IPR000924), Glutaminyl-tRNA synthetase, class Ic, non-specific RNA-binding region part 1 (InterPro:IPR007639), Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding (InterPro:IPR011035), Glutaminyl-tRNA synthetase, class Ic, non-specific RNA-binding region part 2 (InterPro:IPR007638), Glutaminyl-tRNA synthetase, class Ic (InterPro:IPR004514); BEST Arabidopsis thaliana protein match is: tRNA synthetase class I (E and Q) family protein (TAIR:AT5G19720.1); Has 8783 Blast hits to 8778 proteins in 1656 species: Archae - 170; Bacteria - 4659; Metazoa - 349; Fungi - 257; Plants - 97; Viruses - 0; Other Eukaryotes - 3251 (source: NCBI BLink).  protein_id AT1G25350.1p  transcript_id AT1G25350.1  protein_id AT1G25350.1p  transcript_id AT1G25350.1  
At1g25360	chr1:008894428	0.0	W/8894428-8896800	AT1G25360.1  CDS  gene_syn F4F7.25, F4F7_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 17435 Blast hits to 5337 proteins in 179 species: Archae - 2; Bacteria - 0; Metazoa - 141; Fungi - 56; Plants - 16932; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink).  protein_id AT1G25360.1p  transcript_id AT1G25360.1  protein_id AT1G25360.1p  transcript_id AT1G25360.1  
At1g25370	chr1:008898206	0.0	C/8898206-8898934,8898046-8898108	AT1G25370.1  CDS  gene_syn F4F7.1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68340.1); Has 144 Blast hits to 144 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G25370.1p  transcript_id AT1G25370.1  protein_id AT1G25370.1p  transcript_id AT1G25370.1  
At1g25375	chr1:008902960	0.0	C/8902960-8903220,8902740-8902887,8902447-8902601,8902138-8902320,8901919-8901994,8901719-8901790,8901562-8901647,8901390-8901463,8901243-8901288,8900947-8901056,8900611-8900785,8900279-8900467	AT1G25375.1  CDS  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function catalytic activity|GO:0003824||ISS  product metallo-beta-lactamase family protein  note metallo-beta-lactamase family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279); Has 3890 Blast hits to 3889 proteins in 863 species: Archae - 83; Bacteria - 2082; Metazoa - 121; Fungi - 86; Plants - 75; Viruses - 0; Other Eukaryotes - 1443 (source: NCBI BLink).  protein_id AT1G25375.1p  transcript_id AT1G25375.1  protein_id AT1G25375.1p  transcript_id AT1G25375.1  
At1g25380	chr1:008903726	0.0	W/8903726-8903807,8903899-8903994,8904199-8904305,8904495-8904543,8904672-8904775,8904873-8904967,8905085-8905173,8905262-8905356,8905444-8905818	AT1G25380.1  CDS  gene_syn F4F7.45  go_component mitochondrial inner membrane|GO:0005743||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function binding|GO:0005488||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: transporter activity, binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: mitochondrial substrate carrier family protein (TAIR:AT2G47490.1); Has 21875 Blast hits to 10577 proteins in 366 species: Archae - 0; Bacteria - 0; Metazoa - 10770; Fungi - 5942; Plants - 2991; Viruses - 5; Other Eukaryotes - 2167 (source: NCBI BLink).  protein_id AT1G25380.1p  transcript_id AT1G25380.1  protein_id AT1G25380.1p  transcript_id AT1G25380.1  
At1g25390	chr1:008908158	0.0	C/8908158-8908800,8908022-8908060,8907690-8907929,8906640-8907607	AT1G25390.1  CDS  gene_syn F2J7.14, F2J7_14  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase family protein (TAIR:AT1G66880.1); Has 90575 Blast hits to 89358 proteins in 3412 species: Archae - 59; Bacteria - 7976; Metazoa - 39750; Fungi - 7235; Plants - 19369; Viruses - 561; Other Eukaryotes - 15625 (source: NCBI BLink).  protein_id AT1G25390.1p  transcript_id AT1G25390.1  protein_id AT1G25390.1p  transcript_id AT1G25390.1  
At1g25400	chr1:008911463	0.0	C/8911463-8912329	AT1G25400.1  CDS  gene_syn F2J7.13, F2J7_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68440.1); Has 14 Blast hits to 14 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G25400.1p  transcript_id AT1G25400.1  protein_id AT1G25400.1p  transcript_id AT1G25400.1  
At1g25410	chr1:008914191	0.0	C/8914191-8915219	AT1G25410.1  CDS  gene_syn ATIPT6, F2J7.12, F2J7_12  gene ATIPT6  function AB061404 Arabidopsis thaliana AtIPT6 mRNA for cytokinin synthase, complete cds  go_function tRNA isopentenyltransferase activity|GO:0004811||IEA  go_function ATP binding|GO:0005524||IEA  go_process cytokinin biosynthetic process|GO:0009691|17062755|IGI  go_function adenylate dimethylallyltransferase activity|GO:0009824||ISS  product ATIPT6; ATP binding / adenylate dimethylallyltransferase/ tRNA isopentenyltransferase  note ATIPT6; FUNCTIONS IN: adenylate dimethylallyltransferase activity, tRNA isopentenyltransferase activity, ATP binding; INVOLVED IN: cytokinin biosynthetic process; CONTAINS InterPro DOMAIN/s: tRNA isopentenyltransferase (InterPro:IPR002627); BEST Arabidopsis thaliana protein match is: ATIPT1 (isopentenyltransferase 1); adenylate dimethylallyltransferase (TAIR:AT1G68460.1); Has 4582 Blast hits to 4539 proteins in 1376 species: Archae - 0; Bacteria - 2490; Metazoa - 121; Fungi - 88; Plants - 186; Viruses - 0; Other Eukaryotes - 1697 (source: NCBI BLink).  protein_id AT1G25410.1p  transcript_id AT1G25410.1  protein_id AT1G25410.1p  transcript_id AT1G25410.1  
At1g25420	chr1:008916141	0.0	W/8916141-8916190,8916361-8916493,8916571-8916674,8916765-8916936,8917055-8917195,8917609-8917980	AT1G25420.1  CDS  gene_syn F2J7.16, F2J7_16  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34220.2); Has 391 Blast hits to 384 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 129; Fungi - 89; Plants - 145; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT1G25420.1p  transcript_id AT1G25420.1  protein_id AT1G25420.1p  transcript_id AT1G25420.1  
At1g25420	chr1:008916592	0.0	W/8916592-8916674,8916765-8916936,8917055-8917195,8917609-8917980	AT1G25420.2  CDS  gene_syn F2J7.16, F2J7_16  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34220.2); Has 355 Blast hits to 355 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 66; Plants - 144; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT1G25420.2p  transcript_id AT1G25420.2  protein_id AT1G25420.2p  transcript_id AT1G25420.2  
At1g25420	chr1:008916592	0.0	W/8916592-8916674,8916765-8916936,8917055-8917195,8917609-8917980	AT1G25420.3  CDS  gene_syn F2J7.16, F2J7_16  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34220.2); Has 355 Blast hits to 355 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 66; Plants - 144; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT1G25420.3p  transcript_id AT1G25420.3  protein_id AT1G25420.3p  transcript_id AT1G25420.3  
At1g25422	chr1:008919087	0.0	W/8919087-8919410	AT1G25422.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68500.1).  protein_id AT1G25422.1p  transcript_id AT1G25422.1  protein_id AT1G25422.1p  transcript_id AT1G25422.1  
At1g25425	chr1:008922832	0.0	W/8922832-8923122	AT1G25425.1  CDS  gene_syn CLAVATA3/ESR-RELATED 43, CLE43  gene CLE43  go_component endomembrane system|GO:0012505||IEA  product CLE43 (CLAVATA3/ESR-RELATED 43)  note CLAVATA3/ESR-RELATED 43 (CLE43); LOCATED IN: endomembrane system; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G25425.1p  transcript_id AT1G25425.1  protein_id AT1G25425.1p  transcript_id AT1G25425.1  
At1g25430	chr1:008927732	0.0	C/8927732-8933058	AT1G25430.1  mRNA_TE_gene  pseudo  gene_syn F2J7.11, F2J7_11  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 8.0e-45 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)  
At1g25440	chr1:008934286	0.0	C/8934286-8935284,8933939-8934193	AT1G25440.1  CDS  gene_syn F2J7.10, F2J7_10  go_component membrane|GO:0016020|17432890|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (B-box type) family protein  note zinc finger (B-box type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: zinc finger (B-box type) family protein (TAIR:AT1G68520.1); Has 2116 Blast hits to 1317 proteins in 89 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2049; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT1G25440.1p  transcript_id AT1G25440.1  protein_id AT1G25440.1p  transcript_id AT1G25440.1  
At1g25450	chr1:008939253	0.0	C/8939253-8940282,8938679-8939127	AT1G25450.1  CDS  gene_syn 3-KETOACYL-COA SYNTHASE 5, CER60, ECERIFERUM 60, F2J7.9, F2J7_9, KCS5  gene KCS5  function Encodes KCS5, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).  go_component membrane|GO:0016020|17432890|IDA  go_component endoplasmic reticulum|GO:0005783|18465198|IDA  go_process very-long-chain fatty acid metabolic process|GO:0000038|10330468|IDA  go_process response to osmotic stress|GO:0006970|18465198|IEP  go_process response to cold|GO:0009409|18465198|IEP  go_process response to light stimulus|GO:0009416|18465198|IEP  go_process cuticle development|GO:0042335|10330468|IDA  go_process pollen tube development|GO:0048868|19237690|IMP  go_function fatty acid elongase activity|GO:0009922|15277688|IDA  product KCS5 (3-KETOACYL-COA SYNTHASE 5); fatty acid elongase  note 3-KETOACYL-COA SYNTHASE 5 (KCS5); FUNCTIONS IN: fatty acid elongase activity; INVOLVED IN: in 6 processes; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: KCS6 (3-KETOACYL-COA SYNTHASE 6); catalytic/ transferase, transferring acyl groups other than amino-acyl groups (TAIR:AT1G68530.1); Has 2767 Blast hits to 2762 proteins in 659 species: Archae - 0; Bacteria - 899; Metazoa - 0; Fungi - 22; Plants - 1717; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).  protein_id AT1G25450.1p  transcript_id AT1G25450.1  protein_id AT1G25450.1p  transcript_id AT1G25450.1  
At1g25460	chr1:008942811	0.0	W/8942811-8942916,8943019-8943191,8943287-8943475,8943571-8943733,8943832-8944021,8944103-8944244	AT1G25460.1  CDS  gene_syn F2J7.17, F2J7_17  go_process metabolic process|GO:0008152||IEA  go_process flavonoid biosynthetic process|GO:0009813||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product oxidoreductase family protein  note oxidoreductase family protein; FUNCTIONS IN: coenzyme binding, oxidoreductase activity, binding, catalytic activity; INVOLVED IN: cellular metabolic process, metabolic process, flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, root, leaf; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: oxidoreductase family protein (TAIR:AT1G68540.1); Has 7620 Blast hits to 7608 proteins in 1252 species: Archae - 182; Bacteria - 2634; Metazoa - 195; Fungi - 548; Plants - 1400; Viruses - 29; Other Eukaryotes - 2632 (source: NCBI BLink).  protein_id AT1G25460.1p  transcript_id AT1G25460.1  protein_id AT1G25460.1p  transcript_id AT1G25460.1  
At1g25470	chr1:008944901	0.0	C/8944901-8945764	AT1G25470.1  CDS  gene_syn F2J7.8, F2J7_8  function encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Pathogenesis-related genes transcriptional activator PTI6 (InterPro:IPR017392), DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT1G68550.2); Has 1773 Blast hits to 1772 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1769; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G25470.1p  transcript_id AT1G25470.1  protein_id AT1G25470.1p  transcript_id AT1G25470.1  
At1g25470	chr1:008944901	0.0	C/8944901-8945764	AT1G25470.2  CDS  gene_syn F2J7.8, F2J7_8  function encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Pathogenesis-related genes transcriptional activator PTI6 (InterPro:IPR017392), DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT1G68550.2); Has 1773 Blast hits to 1772 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1769; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G25470.2p  transcript_id AT1G25470.2  protein_id AT1G25470.2p  transcript_id AT1G25470.2  
At1g25472	chr1:008946044	0.0	C/8946044-8946243,8945873-8945945	AT1G25472.1  CDS  gene_syn CPuORF54, Conserved peptide upstream open reading frame 54  gene CPuORF54  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF54 represents a conserved upstream opening reading frame relative to major ORF AT1G25470.1  go_component endomembrane system|GO:0012505||IEA  product CPuORF54 (Conserved peptide upstream open reading frame 54)  note Conserved peptide upstream open reading frame 54 (CPuORF54); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: CPuORF53 (Conserved peptide upstream open reading frame 53) (TAIR:AT1G68552.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G25472.1p  transcript_id AT1G25472.1  protein_id AT1G25472.1p  transcript_id AT1G25472.1  
At1g25480	chr1:008948467	0.0	W/8948467-8948806,8948991-8949128,8949230-8949499,8949599-8949735,8949829-8949975,8950262-8950876	AT1G25480.1  CDS  gene_syn F2J7.18, F2J7_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0005 (InterPro:IPR006214); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68600.1); Has 518 Blast hits to 517 proteins in 161 species: Archae - 0; Bacteria - 276; Metazoa - 0; Fungi - 18; Plants - 202; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT1G25480.1p  transcript_id AT1G25480.1  protein_id AT1G25480.1p  transcript_id AT1G25480.1  
At1g25490	chr1:008951700	0.0	W/8951700-8952092,8952187-8952433,8952630-8952742,8952876-8952955,8953177-8953318,8953402-8953482,8953665-8953769,8953855-8954037,8954119-8954211,8954382-8954521,8954621-8954687,8954777-8954899	AT1G25490.1  CDS  gene_syn ATB BETA BETA, EER1, ENHANCED ETHYLENE RESPONSE 1, F2J7.19, F2J7_19, PHOSPHOPROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT A, RCN1, REGA, ROOTS CURL IN NPA, SERINE/THREONINE PROTEIN PHOSPHATASE TYPE 2A REGULATORY SUBUNIT A  gene RCN1  function One of three genes encoding phosphoprotein phosphatase 2A regulatory subunit A; Recessive ethylene-response mutant EER1 displays increased ethylene sensitivity in the hypocotyl and stem  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component protein phosphatase type 2A complex|GO:0000159|8641277|TAS  go_process response to ethylene stimulus|GO:0009723|11161061|IMP  go_process abscisic acid mediated signaling|GO:0009738|12417706|TAS  go_process positive regulation of abscisic acid mediated signaling|GO:0009789|12417706|IMP  go_process auxin polar transport|GO:0009926|11449059|IDA  go_process regulation of stomatal movement|GO:0010119|12417706|IMP  go_function protein phosphatase type 2A regulator activity|GO:0008601|8641277|IGI  go_function protein phosphatase type 2A regulator activity|GO:0008601|8641277|ISS  product RCN1 (ROOTS CURL IN NPA); protein phosphatase type 2A regulator  note ROOTS CURL IN NPA (RCN1); FUNCTIONS IN: protein phosphatase type 2A regulator activity; INVOLVED IN: response to ethylene stimulus, positive regulation of abscisic acid mediated signaling, abscisic acid mediated signaling, regulation of stomatal movement, auxin polar transport; LOCATED IN: cell wall, plasma membrane, protein phosphatase type 2A complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2); protein phosphatase type 2A regulator (TAIR:AT3G25800.1); Has 2195 Blast hits to 1182 proteins in 185 species: Archae - 14; Bacteria - 63; Metazoa - 1206; Fungi - 259; Plants - 211; Viruses - 0; Other Eukaryotes - 442 (source: NCBI BLink).  protein_id AT1G25490.1p  transcript_id AT1G25490.1  protein_id AT1G25490.1p  transcript_id AT1G25490.1  
At1g25500	chr1:008957243	0.0	C/8957243-8957294,8956865-8957162,8956584-8956767,8956242-8956469,8956040-8956156,8955708-8955941,8955437-8955616	AT1G25500.3  CDS  gene_syn F2J7.7, F2J7_7  go_process biological_process|GO:0008150||ND  product choline transporter-related  note choline transporter-related; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13760.1); Has 670 Blast hits to 667 proteins in 129 species: Archae - 0; Bacteria - 0; Metazoa - 365; Fungi - 101; Plants - 100; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT1G25500.3p  transcript_id AT1G25500.3  protein_id AT1G25500.3p  transcript_id AT1G25500.3  
At1g25500	chr1:008957728	0.0	C/8957728-8957793,8956865-8957322,8956584-8956767,8956242-8956469,8956040-8956156,8955708-8955941,8955437-8955616	AT1G25500.2  CDS  gene_syn F2J7.7, F2J7_7  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product choline transporter-related  note choline transporter-related; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13760.1); Has 681 Blast hits to 678 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 365; Fungi - 111; Plants - 101; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT1G25500.2p  transcript_id AT1G25500.2  protein_id AT1G25500.2p  transcript_id AT1G25500.2  
At1g25500	chr1:008957728	0.0	C/8957728-8957793,8956865-8957322,8956584-8956767,8956242-8956469,8956040-8956156,8955708-8955941,8955595-8955606	AT1G25500.1  CDS  gene_syn F2J7.7, F2J7_7  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product choline transporter-related  note choline transporter-related; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13760.1); Has 638 Blast hits to 635 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 335; Fungi - 111; Plants - 89; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).  protein_id AT1G25500.1p  transcript_id AT1G25500.1  protein_id AT1G25500.1p  transcript_id AT1G25500.1  
At1g25510	chr1:008959372	0.0	C/8959372-8960823	AT1G25510.1  CDS  gene_syn F2J7.6, F2J7_6  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT3G18490.1); Has 2853 Blast hits to 2835 proteins in 271 species: Archae - 0; Bacteria - 0; Metazoa - 942; Fungi - 564; Plants - 1213; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).  protein_id AT1G25510.1p  transcript_id AT1G25510.1  protein_id AT1G25510.1p  transcript_id AT1G25510.1  
At1g25520	chr1:008962324	0.0	W/8962324-8962341,8962432-8962500,8962818-8962877,8962964-8963011,8963097-8963188,8963268-8963304,8963387-8963434,8963518-8963586,8963664-8963708,8963779-8963840,8963940-8964012,8964102-8964173	AT1G25520.1  CDS  gene_syn F2J7.20, F2J7_20  go_component membrane|GO:0016020||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0016 (InterPro:IPR001727); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68650.1); Has 1239 Blast hits to 1181 proteins in 440 species: Archae - 13; Bacteria - 667; Metazoa - 131; Fungi - 99; Plants - 104; Viruses - 0; Other Eukaryotes - 225 (source: NCBI BLink).  protein_id AT1G25520.1p  transcript_id AT1G25520.1  protein_id AT1G25520.1p  transcript_id AT1G25520.1  
At1g25530	chr1:008967359	0.0	C/8967359-8967391,8967146-8967291,8966536-8966919,8965386-8965885,8965188-8965279,8965014-8965082,8964827-8964925	AT1G25530.1  CDS  gene_syn F2J7.5, F2J7_5  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product lysine and histidine specific transporter, putative  note lysine and histidine specific transporter, putative; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: lysine and histidine specific transporter, putative (TAIR:AT1G67640.1); Has 2150 Blast hits to 2144 proteins in 183 species: Archae - 2; Bacteria - 19; Metazoa - 787; Fungi - 349; Plants - 832; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink).  protein_id AT1G25530.1p  transcript_id AT1G25530.1  protein_id AT1G25530.1p  transcript_id AT1G25530.1  
At1g25540	chr1:008973299	0.0	C/8973299-8973301,8972891-8973094,8972733-8972798,8972373-8972589,8972189-8972256,8971092-8971889,8970963-8971016,8970788-8970816,8970587-8970655,8970407-8970491,8969979-8970065,8969392-8969895	AT1G25540.2  CDS  gene_syn F2J7.4, F2J7_4, PFT1, PHYTOCHROME AND FLOWERING TIME 1  gene PFT1  function Encodes a nuclear protein that acts in a phyB pathway (but downstream of phyB) and induces flowering in response to suboptimal light conditions. Mutants are hypo-responsive to far-red and hyper-responsive to red light and flower late under long day conditions.  go_component nucleus|GO:0005634|12815435|IDA  go_process red, far-red light phototransduction|GO:0009585|18790998|IMP  go_process response to red light|GO:0010114|12815435|IMP  go_process response to far red light|GO:0010218|12815435|IMP  go_process positive regulation of transcription|GO:0045941|12815435|IEP  go_function transcription coactivator activity|GO:0003713|12815435|NAS  product PFT1 (PHYTOCHROME AND FLOWERING TIME 1); transcription coactivator  note PHYTOCHROME AND FLOWERING TIME 1 (PFT1); FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: positive regulation of transcription, red, far-red light phototransduction, response to red light, response to far red light; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 135317 Blast hits to 41570 proteins in 1493 species: Archae - 34; Bacteria - 10310; Metazoa - 49371; Fungi - 12702; Plants - 8529; Viruses - 890; Other Eukaryotes - 53481 (source: NCBI BLink).  protein_id AT1G25540.2p  transcript_id AT1G25540.2  protein_id AT1G25540.2p  transcript_id AT1G25540.2  
At1g25540	chr1:008974343	0.0	C/8974343-8974446,8973807-8973837,8973551-8973614,8973299-8973429,8972891-8973094,8972733-8972798,8972373-8972589,8972189-8972256,8971092-8971889,8970963-8971016,8970788-8970816,8970587-8970655,8970407-8970491,8969979-8970065,8969392-8969895	AT1G25540.1  CDS  gene_syn F2J7.4, F2J7_4, PFT1, PHYTOCHROME AND FLOWERING TIME 1  gene PFT1  function Encodes a nuclear protein that acts in a phyB pathway (but downstream of phyB) and induces flowering in response to suboptimal light conditions. Mutants are hypo-responsive to far-red and hyper-responsive to red light and flower late under long day conditions.  go_component nucleus|GO:0005634|12815435|IDA  go_process red, far-red light phototransduction|GO:0009585|18790998|IMP  go_process response to red light|GO:0010114|12815435|IMP  go_process response to far red light|GO:0010218|12815435|IMP  go_process positive regulation of transcription|GO:0045941|12815435|IEP  go_function transcription coactivator activity|GO:0003713|12815435|NAS  product PFT1 (PHYTOCHROME AND FLOWERING TIME 1); transcription coactivator  note PHYTOCHROME AND FLOWERING TIME 1 (PFT1); FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: positive regulation of transcription, red, far-red light phototransduction, response to red light, response to far red light; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: von Willebrand factor, type A (InterPro:IPR002035); Has 135865 Blast hits to 41609 proteins in 1494 species: Archae - 34; Bacteria - 10317; Metazoa - 49441; Fungi - 12720; Plants - 8624; Viruses - 890; Other Eukaryotes - 53839 (source: NCBI BLink).  protein_id AT1G25540.1p  transcript_id AT1G25540.1  protein_id AT1G25540.1p  transcript_id AT1G25540.1  
At1g25550	chr1:008976644	0.0	W/8976644-8976788,8976881-8977435,8977523-8977599,8977685-8977942	AT1G25550.1  CDS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677|11118137|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT1G68670.1); Has 883 Blast hits to 881 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 869; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G25550.1p  transcript_id AT1G25550.1  protein_id AT1G25550.1p  transcript_id AT1G25550.1  
At1g25560	chr1:008981891	0.0	C/8981891-8982976	AT1G25560.1  CDS  gene_syn F2J7.3, F2J7_3, TEM1, TEMPRANILLO 1  gene TEM1  function Encodes a member of the RAV transcription factor family that contains AP2 and B3 binding domains. Involved in the regulation of flowering under long days. Loss of function results in early flowering. Overexpression causes late flowering and repression of expression of FT.  go_component chloroplast|GO:0009507||IEA  go_process photoperiodism, flowering|GO:0048573|18718758|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product TEM1 (TEMPRANILLO 1); transcription factor  note TEMPRANILLO 1 (TEM1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: photoperiodism, flowering; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Transcriptional factor B3 (InterPro:IPR003340), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: RAV2 (REGULATOR OF THE ATPASE OF THE VACUOLAR MEMBRANE); DNA binding / transcription factor/ transcription repressor (TAIR:AT1G68840.1); Has 3890 Blast hits to 3756 proteins in 209 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3867; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G25560.1p  transcript_id AT1G25560.1  protein_id AT1G25560.1p  transcript_id AT1G25560.1  
At1g25570	chr1:008995352	0.0	C/8995352-8995430,8994224-8995273,8993936-8994086,8993488-8993559,8993279-8993347,8992987-8993055,8992725-8992802,8992382-8992590,8992183-8992292	AT1G25570.1  CDS  gene_syn F2J7.2  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function protein binding|GO:0005515||IEA  product leucine-rich repeat protein-related  note leucine-rich repeat protein-related; FUNCTIONS IN: protein binding; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210); BEST Arabidopsis thaliana protein match is: AtRLP4 (Receptor Like Protein 4); protein binding (TAIR:AT1G28340.1); Has 22991 Blast hits to 6621 proteins in 344 species: Archae - 2; Bacteria - 311; Metazoa - 61; Fungi - 5; Plants - 21791; Viruses - 0; Other Eukaryotes - 821 (source: NCBI BLink).  protein_id AT1G25570.1p  transcript_id AT1G25570.1  protein_id AT1G25570.1p  transcript_id AT1G25570.1  
At1g25580	chr1:008999593	0.0	C/8999593-8999600,8998894-8999035,8998616-8998802,8998012-8998526,8997206-8997649,8997064-8997117	AT1G25580.1  CDS  gene_syn ANAC008, Arabidopsis NAC domain containing protein 8, F2J7.1  gene ANAC008  go_process regulation of transcription|GO:0045449||IEA  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ANAC008 (Arabidopsis NAC domain containing protein 8); transcription factor  note Arabidopsis NAC domain containing protein 8 (ANAC008); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac044 (Arabidopsis NAC domain containing protein 44); transcription factor (TAIR:AT3G01600.1); Has 1166 Blast hits to 1164 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 22; Fungi - 5; Plants - 1137; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G25580.1p  transcript_id AT1G25580.1  protein_id AT1G25580.1p  transcript_id AT1G25580.1  
At1g25682	chr1:009004548	0.0	C/9004548-9004550,9003951-9004093,9003545-9003653,9003254-9003413,9002970-9003133,9002532-9002885	AT1G25682.1  CDS  gene_syn F14G11.11, F14G11_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product cell cycle control protein-related  note cell cycle control protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF572 (InterPro:IPR007590); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25988.1); Has 517 Blast hits to 517 proteins in 152 species: Archae - 0; Bacteria - 5; Metazoa - 212; Fungi - 149; Plants - 56; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT1G25682.1p  transcript_id AT1G25682.1  protein_id AT1G25682.1p  transcript_id AT1G25682.1  
At1g25784	chr1:009005557	0.0	W/9005557-9010027	AT1G25784.1  mRNA_TE_gene  pseudo  gene_syn F14G11.3, F14G11_3  note Transposable element gene, Mutator-like transposase family, has a 3.7e-80 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g25886	chr1:009010258	0.0	C/9010258-9015226	AT1G25886.1  mRNA_TE_gene  pseudo  gene_syn F14G11.4, F14G11_4  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G14770.2); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G27780.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G36860.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At1g25988	chr1:009017370	0.0	C/9017370-9017450,9016918-9017023,9016672-9016797,9016455-9016563,9016252-9016372	AT1G25988.1  CDS  gene_syn F14G11.5, F14G11_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF572 (InterPro:IPR007590); BEST Arabidopsis thaliana protein match is: cell cycle control protein-related (TAIR:AT1G25682.1); Has 129 Blast hits to 129 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 92; Fungi - 7; Plants - 26; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G25988.1p  transcript_id AT1G25988.1  protein_id AT1G25988.1p  transcript_id AT1G25988.1  
At1g26090	chr1:009020509	0.0	W/9020509-9020748,9020973-9021116,9021211-9021285,9021381-9021574,9021663-9021834,9021913-9022323,9022488-9022619	AT1G26090.1  CDS  gene_syn F14G11.6  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_component plastoglobule|GO:0010287|16461379|IDA  product unknown protein  note unknown protein; LOCATED IN: chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 719 Blast hits to 710 proteins in 233 species: Archae - 67; Bacteria - 402; Metazoa - 88; Fungi - 67; Plants - 27; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT1G26090.1p  transcript_id AT1G26090.1  protein_id AT1G26090.1p  transcript_id AT1G26090.1  
At1g26100	chr1:009023959	0.0	C/9023959-9024081,9023814-9023865,9023486-9023682,9022716-9023054	AT1G26100.1  CDS  gene_syn F14G11.7, F14G11_7  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_component integral to membrane|GO:0016021||ISS  go_function carbon-monoxide oxygenase activity|GO:0008805||ISS  product cytochrome B561 family protein  note cytochrome B561 family protein; FUNCTIONS IN: carbon-monoxide oxygenase activity; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b561, eukaryote (InterPro:IPR004877), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593); BEST Arabidopsis thaliana protein match is: ACYB-1; carbon-monoxide oxygenase (TAIR:AT5G38630.1); Has 437 Blast hits to 437 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 323; Fungi - 5; Plants - 100; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G26100.1p  transcript_id AT1G26100.1  protein_id AT1G26100.1p  transcript_id AT1G26100.1  
At1g26110	chr1:009027406	0.0	C/9027406-9027556,9027001-9027101,9026847-9026921,9025797-9026756,9025440-9025511,9025138-9025311,9024947-9025057,9024616-9024807	AT1G26110.1  CDS  gene_syn F14G11.8, F14G11_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45330.1); Has 43564 Blast hits to 18145 proteins in 930 species: Archae - 33; Bacteria - 8614; Metazoa - 16661; Fungi - 5004; Plants - 6818; Viruses - 592; Other Eukaryotes - 5842 (source: NCBI BLink).  protein_id AT1G26110.1p  transcript_id AT1G26110.1  protein_id AT1G26110.1p  transcript_id AT1G26110.1  
At1g26110	chr1:009027406	0.0	C/9027406-9027556,9027001-9027101,9026847-9026921,9025797-9026756,9025605-9025624,9025440-9025473,9025138-9025311,9024947-9025057,9024616-9024807	AT1G26110.2  CDS  gene_syn F14G11.8, F14G11_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45330.1).  protein_id AT1G26110.2p  transcript_id AT1G26110.2  protein_id AT1G26110.2p  transcript_id AT1G26110.2  
At1g26120	chr1:009030972	0.0	C/9030972-9031402,9030764-9030840,9030597-9030666,9030401-9030481,9030226-9030300,9029996-9030097,9029767-9029907,9029329-9029394,9029076-9029219,9028895-9028985,9028656-9028808	AT1G26120.1  CDS  gene_syn F14G11.9, F14G11_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product esterase-related  note esterase-related; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Carboxylesterase, type B (InterPro:IPR002018); BEST Arabidopsis thaliana protein match is: ATPCME (PRENYLCYSTEINE METHYLESTERASE); prenylcysteine methylesterase (TAIR:AT5G15860.1); Has 6064 Blast hits to 6049 proteins in 896 species: Archae - 44; Bacteria - 2838; Metazoa - 1611; Fungi - 410; Plants - 133; Viruses - 5; Other Eukaryotes - 1023 (source: NCBI BLink).  protein_id AT1G26120.1p  transcript_id AT1G26120.1  protein_id AT1G26120.1p  transcript_id AT1G26120.1  
At1g26130	chr1:009033600	0.0	W/9033600-9034004,9034274-9035619,9035703-9035813,9035887-9036163,9036256-9036344,9036447-9036552,9036669-9036878,9036969-9037094,9037176-9037274,9037371-9037562,9037653-9038246	AT1G26130.1  CDS  gene_syn F28B23.19, F28B23_19  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process ATP biosynthetic process|GO:0006754||IEA  go_process metabolic process|GO:0008152||IEA  go_process phospholipid transport|GO:0015914||IEA  go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662||ISS  product haloacid dehalogenase-like hydrolase family protein  note haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: metabolic process, ATP biosynthetic process, phospholipid transport; LOCATED IN: plasma membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, phospholipid-translocating, flippase (InterPro:IPR006539), ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), HAD superfamily hydrolase-like, type 3 (InterPro:IPR013200); BEST Arabidopsis thaliana protein match is: haloacid dehalogenase-like hydrolase family protein (TAIR:AT1G68710.1); Has 8080 Blast hits to 7119 proteins in 907 species: Archae - 80; Bacteria - 1883; Metazoa - 2661; Fungi - 1345; Plants - 521; Viruses - 2; Other Eukaryotes - 1588 (source: NCBI BLink).  protein_id AT1G26130.1p  transcript_id AT1G26130.1  protein_id AT1G26130.1p  transcript_id AT1G26130.1  
At1g26140	chr1:009039428	0.0	C/9039428-9039540,9038708-9039083	AT1G26140.1  CDS  gene_syn F28B23.18, F28B23_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68700.1); Has 21 Blast hits to 21 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G26140.1p  transcript_id AT1G26140.1  protein_id AT1G26140.1p  transcript_id AT1G26140.1  
At1g26150	chr1:009041736	0.0	C/9041736-9042873,9041060-9041470,9040898-9040984,9040705-9040775,9040539-9040615,9040296-9040443,9040057-9040218,9039790-9039984	AT1G26150.1  CDS  gene_syn ATPERK10, F28B23.17, F28B23_17, PERK10, PROLINE-RICH EXTENSIN-LIKE RECEPTOR KINASE 10  gene PERK10  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function protein kinase activity|GO:0004672||ISS  product PERK10 (PROLINE-RICH EXTENSIN-LIKE RECEPTOR KINASE 10); ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note PROLINE-RICH EXTENSIN-LIKE RECEPTOR KINASE 10 (PERK10); FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATP binding / protein kinase/ protein serine/threonine kinase (TAIR:AT1G68690.1); Has 437812 Blast hits to 190668 proteins in 4392 species: Archae - 931; Bacteria - 74625; Metazoa - 185213; Fungi - 57061; Plants - 50943; Viruses - 9960; Other Eukaryotes - 59079 (source: NCBI BLink).  protein_id AT1G26150.1p  transcript_id AT1G26150.1  protein_id AT1G26150.1p  transcript_id AT1G26150.1  
At1g26160	chr1:009046688	0.0	C/9046688-9046945,9046403-9046527,9045835-9045872,9045401-9045511,9045240-9045319,9045085-9045121,9044951-9044992,9044784-9044869	AT1G26160.1  CDS  gene_syn F28B23.16, F28B23_16  go_component chloroplast|GO:0009507|18431481|IDA  go_function catalytic activity|GO:0003824||IEA  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product metal-dependent phosphohydrolase HD domain-containing protein  note metal-dependent phosphohydrolase HD domain-containing protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD region, subdomain (InterPro:IPR006674), Metal-dependent phosphohydrolase, HD region (InterPro:IPR003607); BEST Arabidopsis thaliana protein match is: metal-dependent phosphohydrolase HD domain-containing protein (TAIR:AT2G23820.2); Has 945 Blast hits to 927 proteins in 398 species: Archae - 83; Bacteria - 512; Metazoa - 101; Fungi - 100; Plants - 40; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).  protein_id AT1G26160.1p  transcript_id AT1G26160.1  protein_id AT1G26160.1p  transcript_id AT1G26160.1  
At1g26170	chr1:009054321	0.0	C/9054321-9054438,9054155-9054216,9053958-9054050,9053704-9053875,9053464-9053579,9053252-9053338,9053043-9053159,9052878-9052941,9052649-9052791,9052450-9052497,9052290-9052358,9051903-9051978,9051642-9051772,9051406-9051465,9051253-9051322,9051102-9051166,9050962-9051023,9050762-9050885,9050618-9050675,9050410-9050522,9050174-9050251,9050005-9050067,9049811-9049906,9049621-9049730,9049096-9049285,9048848-9048962,9048624-9048736,9048457-9048534,9048197-9048262,9047979-9048104,9047847-9047900,9047671-9047751,9047539-9047589	AT1G26170.1  CDS  gene_syn F28B23.15, F28B23_15  go_component nucleus|GO:0005634||IEA  go_component nuclear pore|GO:0005643||IEA  go_component cytoplasm|GO:0005737||IEA  go_process protein import into nucleus, docking|GO:0000059||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function binding|GO:0005488||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component nucleus|GO:0005634||ISS  go_component nuclear pore|GO:0005643||ISS  go_component cytoplasm|GO:0005737||ISS  go_process protein import into nucleus, docking|GO:0000059||ISS  go_function protein transporter activity|GO:0008565||ISS  product binding / protein transporter  note binding / protein transporter; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding / protein transporter (TAIR:AT3G59020.2); Has 1115 Blast hits to 1108 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 550; Fungi - 363; Plants - 103; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).  protein_id AT1G26170.1p  transcript_id AT1G26170.1  protein_id AT1G26170.1p  transcript_id AT1G26170.1  
At1g26180	chr1:009054824	0.0	W/9054824-9055171,9055393-9055473,9055578-9055637,9055720-9055763,9055918-9055960,9056053-9056124,9056217-9056318,9056407-9056526	AT1G26180.1  CDS  gene_syn F28B23.14, F28B23_14  product unknown protein  note unknown protein; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; Has 229 Blast hits to 229 proteins in 65 species: Archae - 0; Bacteria - 106; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT1G26180.1p  transcript_id AT1G26180.1  protein_id AT1G26180.1p  transcript_id AT1G26180.1  
At1g26190	chr1:009060097	0.0	C/9060097-9060433,9059874-9059988,9059497-9059692,9059293-9059406,9058998-9059171,9058670-9058864,9058394-9058516,9058188-9058315,9057990-9058104,9057623-9057895,9057285-9057539	AT1G26190.1  CDS  gene_syn F28B23.13, F28B23_13  go_process cAMP biosynthetic process|GO:0006171||IEA  go_process metabolic process|GO:0008152||IEA  go_function adenylate cyclase activity|GO:0004016||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||IEA  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_component cellular_component|GO:0005575||ND  go_process biosynthetic process|GO:0009058||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product phosphoribulokinase/uridine kinase family protein  note phosphoribulokinase/uridine kinase family protein; FUNCTIONS IN: adenylate cyclase activity, kinase activity, phosphotransferase activity, alcohol group as acceptor, ATP binding; INVOLVED IN: biosynthetic process, cAMP biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083), Uridine kinase (InterPro:IPR000764), Adenylate cyclase (InterPro:IPR008172); BEST Arabidopsis thaliana protein match is: phosphoribulokinase/uridine kinase family protein (TAIR:AT1G73980.1); Has 2755 Blast hits to 2699 proteins in 936 species: Archae - 19; Bacteria - 1714; Metazoa - 373; Fungi - 94; Plants - 171; Viruses - 2; Other Eukaryotes - 382 (source: NCBI BLink).  protein_id AT1G26190.1p  transcript_id AT1G26190.1  protein_id AT1G26190.1p  transcript_id AT1G26190.1  
At1g26200	chr1:009064780	0.0	C/9064780-9064914,9064454-9064674,9064210-9064365,9063931-9064116,9063617-9063822,9063471-9063505	AT1G26200.1  CDS  gene_syn F28B23.26  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Longevity assurance, LAG1/LAC1 (InterPro:IPR016439), TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) (TAIR:AT1G13580.2).  protein_id AT1G26200.1p  transcript_id AT1G26200.1  protein_id AT1G26200.1p  transcript_id AT1G26200.1  
At1g26208	chr1:009066636	0.0	C/9066636-9068432	AT1G26208.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G26210  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G26208.1  
At1g26210	chr1:009067524	0.0	W/9067524-9067970	AT1G26210.1  CDS  gene_syn F28B23.12, F28B23_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68870.1); Has 421 Blast hits to 382 proteins in 90 species: Archae - 0; Bacteria - 20; Metazoa - 121; Fungi - 70; Plants - 55; Viruses - 6; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT1G26210.1p  transcript_id AT1G26210.1  protein_id AT1G26210.1p  transcript_id AT1G26210.1  
At1g26208	chr1:009067732	0.0	C/9067732-9069238	AT1G26208.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G26210  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G26208.2  
At1g26218	chr1:009071058	0.0	C/9071058-9072273	AT1G26218.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G26220  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G26218.1  
At1g26220	chr1:009071157	0.0	W/9071157-9071750	AT1G26220.1  CDS  gene_syn F28B23.27, F28B23_27  go_component chloroplast|GO:0009507|18431481|IDA  go_process metabolic process|GO:0008152||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_process metabolic process|GO:0008152||ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product GCN5-related N-acetyltransferase (GNAT) family protein  note GCN5-related N-acetyltransferase (GNAT) family protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: ATNSI (NUCLEAR SHUTTLE INTERACTING); N-acetyltransferase (TAIR:AT1G32070.3); Has 851 Blast hits to 851 proteins in 219 species: Archae - 14; Bacteria - 530; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 262 (source: NCBI BLink).  protein_id AT1G26220.1p  transcript_id AT1G26220.1  protein_id AT1G26220.1p  transcript_id AT1G26220.1  
At1g26230	chr1:009075105	0.0	C/9075105-9075272,9074910-9075035,9074678-9074815,9074494-9074589,9074154-9074396,9073832-9074066,9073562-9073731,9073337-9073414,9073197-9073268,9073016-9073120,9072847-9072939,9072686-9072778,9072388-9072606	AT1G26230.1  CDS  gene_syn F28B23.11, F28B23_11  go_component chloroplast|GO:0009507|18431481|IDA  go_process cellular protein metabolic process|GO:0044267||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  product chaperonin, putative  note chaperonin, putative; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: cellular protein metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: CPN60B (CHAPERONIN 60 BETA); ATP binding / protein binding (TAIR:AT1G55490.2); Has 24360 Blast hits to 24320 proteins in 5137 species: Archae - 390; Bacteria - 14007; Metazoa - 1488; Fungi - 952; Plants - 459; Viruses - 2; Other Eukaryotes - 7062 (source: NCBI BLink).  protein_id AT1G26230.1p  transcript_id AT1G26230.1  protein_id AT1G26230.1p  transcript_id AT1G26230.1  
At1g26233	chr1:009076048	0.0	C/9076048-9076182	AT1G26233.1  snoRNA  gene_syn SDMALL NUCLEOLAR RNA 95, SNOR95  gene SNOR95  function Encodes a H/ACA-box snoRNA (snoR95). Gb: AJ505672  go_component box H/ACA snoRNP complex|GO:0031429||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product SNOR95 (SDMALL NUCLEOLAR RNA 95); snoRNA  transcript_id AT1G26233.1  
At1g26235	chr1:009076447	0.0	C/9076447-9076572	AT1G26235.1  ncRNA  function Encodes a snmRNA. Gb: AJ505711  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G26235.1  
At1g26240	chr1:009078140	0.0	C/9078140-9079576	AT1G26240.1  CDS  gene_syn F28B23.10, F28B23_10  go_component endomembrane system|GO:0012505||IEA  go_process plant-type cell wall organization|GO:0009664||IEA  go_function structural constituent of cell wall|GO:0005199||IEA  product proline-rich extensin-like family protein  note proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Extensin-like region (InterPro:IPR006706); Has 321227 Blast hits to 31588 proteins in 1214 species: Archae - 1075; Bacteria - 49709; Metazoa - 123072; Fungi - 39590; Plants - 51687; Viruses - 9561; Other Eukaryotes - 46533 (source: NCBI BLink).  protein_id AT1G26240.1p  transcript_id AT1G26240.1  protein_id AT1G26240.1p  transcript_id AT1G26240.1  
At1g26250	chr1:009083903	0.0	W/9083903-9085234	AT1G26250.1  CDS  gene_syn F28B23.9, F28B23_9  go_component endomembrane system|GO:0012505||IEA  go_process plant-type cell wall organization|GO:0009664||IEA  go_function structural constituent of cell wall|GO:0005199||IEA  product proline-rich extensin, putative  note proline-rich extensin, putative; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Extensin-like region (InterPro:IPR006706); Has 254179 Blast hits to 36300 proteins in 1345 species: Archae - 786; Bacteria - 38672; Metazoa - 98390; Fungi - 32269; Plants - 40660; Viruses - 7285; Other Eukaryotes - 36117 (source: NCBI BLink).  protein_id AT1G26250.1p  transcript_id AT1G26250.1  protein_id AT1G26250.1p  transcript_id AT1G26250.1  
At1g26260	chr1:009087214	0.0	W/9087214-9087391,9087545-9087762,9087836-9088003,9088089-9088154,9088256-9088324,9088435-9088506,9088595-9088732,9088837-9088924,9089013-9089035	AT1G26260.3  CDS  gene_syn CIB5, CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 5, F28B23.8, F28B23_8  gene CIB5  function Encodes CIB5 (cryptochrome-interacting basic-helix-loop-helix). Related to CIB1 (AT4G34530). CIB5 interacts with CRY2 and forms heterodimer with CIB1 in vitro. Regulates flowering time redundantly with CIB1.  go_component nucleus|GO:0005634||IEA  go_process positive regulation of flower development|GO:0009911|18988809|IGI  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product CIB5 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 5); DNA binding / transcription factor  note CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 5 (CIB5); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: positive regulation of flower development, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT1G68920.2); Has 1120 Blast hits to 1119 proteins in 79 species: Archae - 0; Bacteria - 2; Metazoa - 26; Fungi - 19; Plants - 1063; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G26260.3p  transcript_id AT1G26260.3  protein_id AT1G26260.3p  transcript_id AT1G26260.3  
At1g26260	chr1:009087214	0.0	W/9087214-9087762,9087836-9088003,9088089-9088154,9088256-9088324,9088435-9088506,9088595-9088732,9088837-9088924,9089013-9089035	AT1G26260.1  CDS  gene_syn CIB5, CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 5, F28B23.8, F28B23_8  gene CIB5  function Encodes CIB5 (cryptochrome-interacting basic-helix-loop-helix). Related to CIB1 (AT4G34530). CIB5 interacts with CRY2 and forms heterodimer with CIB1 in vitro. Regulates flowering time redundantly with CIB1.  go_component nucleus|GO:0005634||IEA  go_process positive regulation of flower development|GO:0009911|18988809|IGI  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product CIB5 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 5); DNA binding / transcription factor  note CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 5 (CIB5); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: positive regulation of flower development, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT1G68920.2); Has 1129 Blast hits to 1129 proteins in 79 species: Archae - 0; Bacteria - 2; Metazoa - 27; Fungi - 19; Plants - 1073; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G26260.1p  transcript_id AT1G26260.1  protein_id AT1G26260.1p  transcript_id AT1G26260.1  
At1g26260	chr1:009087214	0.0	W/9087214-9087762,9087836-9088003,9088089-9088154,9088256-9088324,9088435-9088506,9088595-9088732,9088837-9088924,9089013-9089035	AT1G26260.2  CDS  gene_syn CIB5, CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 5, F28B23.8, F28B23_8  gene CIB5  function Encodes CIB5 (cryptochrome-interacting basic-helix-loop-helix). Related to CIB1 (AT4G34530). CIB5 interacts with CRY2 and forms heterodimer with CIB1 in vitro. Regulates flowering time redundantly with CIB1.  go_component nucleus|GO:0005634||IEA  go_process positive regulation of flower development|GO:0009911|18988809|IGI  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product CIB5 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 5); DNA binding / transcription factor  note CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 5 (CIB5); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: positive regulation of flower development, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT1G68920.2); Has 1129 Blast hits to 1129 proteins in 79 species: Archae - 0; Bacteria - 2; Metazoa - 27; Fungi - 19; Plants - 1073; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G26260.2p  transcript_id AT1G26260.2  protein_id AT1G26260.2p  transcript_id AT1G26260.2  
At1g26270	chr1:009089822	0.0	C/9089822-9091714	AT1G26270.1  CDS  gene_syn F28B23.7, F28B23_7  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_component cellular_component|GO:0005575||ND  go_function inositol or phosphatidylinositol kinase activity|GO:0004428||ISS  product phosphatidylinositol 3- and 4-kinase family protein  note phosphatidylinositol 3- and 4-kinase family protein; FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3- and 4-kinase, catalytic (InterPro:IPR000403); BEST Arabidopsis thaliana protein match is: phosphatidylinositol 3- and 4-kinase family protein (TAIR:AT2G03890.1); Has 429 Blast hits to 418 proteins in 129 species: Archae - 0; Bacteria - 2; Metazoa - 149; Fungi - 63; Plants - 133; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT1G26270.1p  transcript_id AT1G26270.1  protein_id AT1G26270.1p  transcript_id AT1G26270.1  
At1g26290	chr1:009098051	0.0	W/9098051-9098080,9098157-9098555	AT1G26290.1  CDS  gene_syn F28B23.5, F28B23_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf apex, flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 121 Blast hits to 107 proteins in 33 species: Archae - 0; Bacteria - 6; Metazoa - 15; Fungi - 3; Plants - 7; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT1G26290.1p  transcript_id AT1G26290.1  protein_id AT1G26290.1p  transcript_id AT1G26290.1  
At1g26300	chr1:009099314	0.0	C/9099314-9099746,9099140-9099246,9098937-9099038	AT1G26300.2  CDS  gene_syn F28B23.4, F28B23_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product BSD domain-containing protein  note BSD domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69030.1); Has 115 Blast hits to 114 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT1G26300.2p  transcript_id AT1G26300.2  protein_id AT1G26300.2p  transcript_id AT1G26300.2  
At1g26300	chr1:009099314	0.0	C/9099314-9099746,9099140-9099246,9098941-9099038,9096431-9096627,9096176-9096225,9096023-9096088	AT1G26300.1  CDS  gene_syn F28B23.4, F28B23_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product BSD domain-containing protein  note BSD domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69030.1); Has 146 Blast hits to 143 proteins in 27 species: Archae - 2; Bacteria - 4; Metazoa - 9; Fungi - 4; Plants - 98; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G26300.1p  transcript_id AT1G26300.1  protein_id AT1G26300.1p  transcript_id AT1G26300.1  
At1g26310	chr1:009103326	0.0	C/9103326-9103510,9102192-9102270,9102010-9102080,9101822-9101921,9101646-9101687,9101393-9101434,9100644-9100792,9100330-9100429	AT1G26310.1  CDS  gene_syn CAL, CAL1, CAULIFLOWER, F28B23.25, F28B23_25, MADS3, agl10  gene CAL  function Floral homeotic gene encoding a MADS domain protein homologous to AP1. Enhances the flower to shoot transformation in ap1 mutants.  go_component nucleus|GO:0005634||IEA  go_process positive regulation of flower development|GO:0009911|10648231|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700|7824951|TAS  go_function transcription factor activity|GO:0003700||ISS  product CAL (CAULIFLOWER); DNA binding / transcription factor  note CAULIFLOWER (CAL); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: positive regulation of flower development; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AP1 (APETALA1); DNA binding / protein binding / protein heterodimerization/ transcription activator/ transcription factor (TAIR:AT1G69120.1); Has 5920 Blast hits to 5907 proteins in 735 species: Archae - 6; Bacteria - 19; Metazoa - 723; Fungi - 209; Plants - 4769; Viruses - 0; Other Eukaryotes - 194 (source: NCBI BLink).  protein_id AT1G26310.1p  transcript_id AT1G26310.1  protein_id AT1G26310.1p  transcript_id AT1G26310.1  
At1g26320	chr1:009105240	0.0	W/9105240-9105485,9105923-9106103,9106233-9106399,9106482-9106564,9106651-9107029	AT1G26320.1  CDS  gene_syn F28B23.3, F28B23_3  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process response to oxidative stress|GO:0006979|7592828|IEP  product NADP-dependent oxidoreductase, putative  note NADP-dependent oxidoreductase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: response to oxidative stress; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: NADP-dependent oxidoreductase, putative (TAIR:AT3G03080.1); Has 10522 Blast hits to 10506 proteins in 1017 species: Archae - 65; Bacteria - 4623; Metazoa - 739; Fungi - 660; Plants - 316; Viruses - 0; Other Eukaryotes - 4119 (source: NCBI BLink).  protein_id AT1G26320.1p  transcript_id AT1G26320.1  protein_id AT1G26320.1p  transcript_id AT1G26320.1  
At1g26330	chr1:009107625	0.0	W/9107625-9107738,9108186-9108293,9108377-9108508,9109099-9109605,9109737-9109851,9109969-9110289,9110401-9110832,9110937-9111784,9111877-9111962,9112048-9112266,9112386-9112514,9112698-9113042,9113216-9113331,9113423-9113520	AT1G26330.1  CDS  gene_syn F28B23.2, F28B23_2  go_component nucleus|GO:0005634||IEA  go_function DNA binding|GO:0003677||IEA  go_process biological_process|GO:0008150||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), FY-rich, C-terminal (InterPro:IPR003889), WD40/YVTN repeat-like (InterPro:IPR015943); Has 235 Blast hits to 140 proteins in 49 species: Archae - 0; Bacteria - 23; Metazoa - 65; Fungi - 14; Plants - 25; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT1G26330.1p  transcript_id AT1G26330.1  protein_id AT1G26330.1p  transcript_id AT1G26330.1  
At1g26340	chr1:009113992	0.0	W/9113992-9114078,9114335-9114401,9114502-9114755	AT1G26340.1  CDS  gene_syn ARABIDOPSIS CYTOCHROME B5 ISOFORM A, ATCB5-A, B5  6, CB5-A, CYTOCHROME B5 ISOFORM A, F28B23.1  gene CB5-A  function encodes a member of the cytochromes b5 family of proteins that localizes to the outer envelope of the chloroplast. The C-terminal portion of the protein appears to be capable of inserting into a plant microsomal membrane in vitro.  go_component chloroplast outer membrane|GO:0009707|17322552|IDA  go_component stromule|GO:0010319|17322552|IDA  go_function heme binding|GO:0020037|17322552|ISS  product CB5-A (CYTOCHROME B5 ISOFORM A); heme binding  note CYTOCHROME B5 ISOFORM A (CB5-A); FUNCTIONS IN: heme binding; LOCATED IN: chloroplast outer membrane, stromule; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b5, heme-binding site (InterPro:IPR018506), Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: CB5-E (CYTOCHROME B5 ISOFORM E); heme binding (TAIR:AT5G53560.1); Has 3088 Blast hits to 3061 proteins in 380 species: Archae - 1; Bacteria - 19; Metazoa - 911; Fungi - 1091; Plants - 550; Viruses - 3; Other Eukaryotes - 513 (source: NCBI BLink).  protein_id AT1G26340.1p  transcript_id AT1G26340.1  protein_id AT1G26340.1p  transcript_id AT1G26340.1  
At1g26350	chr1:009116619	0.0	C/9116619-9116781,9116010-9116164	AT1G26350.1  CDS  gene_syn F28B23.28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, carpel; EXPRESSED DURING: petal differentiation and expansion stage; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G26350.1p  transcript_id AT1G26350.1  protein_id AT1G26350.1p  transcript_id AT1G26350.1  
At1g26355	chr1:009118354	0.0	C/9118354-9118611,9117950-9118033	AT1G26355.1  CDS  gene_syn SP1L1, SPIRAL1-LIKE1  gene SP1L1  function SPIRAL1-LIKE1 belongs to a six-member gene family in Arabidopsis; all members share a high sequence similarity in amino- and carboxy-terminal regions. GUS expression was detected only in pollen; however, no endogenous transcript was found.  product SP1L1 (SPIRAL1-LIKE1)  note SPIRAL1-LIKE1 (SP1L1); BEST Arabidopsis thaliana protein match is: SP1L2 (SPIRAL1-LIKE2) (TAIR:AT1G69230.2); Has 2 Blast hits to 2 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G26355.1p  transcript_id AT1G26355.1  protein_id AT1G26355.1p  transcript_id AT1G26355.1  
At1g26360	chr1:009120673	0.0	C/9120673-9121203,9120179-9120418,9119938-9120081,9119390-9119521,9119021-9119308	AT1G26360.1  CDS  gene_syn ARABIDOPSIS THALIANA METHYL ESTERASE 13, ATMES13, MES13, METHYL ESTERASE 13, T1K7.26, T1K7_26  gene MES13  function Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco but no enzymatic activity has been identified for this protein.  go_component chloroplast|GO:0009507||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function hydrolase activity|GO:0016787||ISS  product MES13 (METHYL ESTERASE 13); hydrolase  note METHYL ESTERASE 13 (MES13); FUNCTIONS IN: hydrolase activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: MES15 (METHYL ESTERASE 15); hydrolase (TAIR:AT1G69240.1); Has 1349 Blast hits to 1349 proteins in 350 species: Archae - 4; Bacteria - 735; Metazoa - 12; Fungi - 35; Plants - 344; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).  protein_id AT1G26360.1p  transcript_id AT1G26360.1  protein_id AT1G26360.1p  transcript_id AT1G26360.1  
At1g26370	chr1:009125283	0.0	C/9125283-9125368,9125131-9125180,9124964-9125044,9124649-9124865,9124128-9124545,9123808-9124011,9123544-9123704,9123239-9123424,9122834-9123065,9122544-9122743,9122323-9122457,9122030-9122213	AT1G26370.1  CDS  gene_syn T1K7.25, T1K7_25  go_component chloroplast|GO:0009507||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process biological_process|GO:0008150||ND  go_function RNA helicase activity|GO:0003724||ISS  product RNA helicase, putative  note RNA helicase, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated region (InterPro:IPR007502), ATPase, AAA+ type, core (InterPro:IPR003593), Region of unknown function DUF1605 (InterPro:IPR011709), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP-dependent RNA helicase, putative (TAIR:AT3G26560.1); Has 6916 Blast hits to 6404 proteins in 949 species: Archae - 2; Bacteria - 1916; Metazoa - 1973; Fungi - 797; Plants - 383; Viruses - 390; Other Eukaryotes - 1455 (source: NCBI BLink).  protein_id AT1G26370.1p  transcript_id AT1G26370.1  protein_id AT1G26370.1p  transcript_id AT1G26370.1  
At1g26380	chr1:009126901	0.0	C/9126901-9128508	AT1G26380.1  CDS  gene_syn T1K7.24, T1K7_24  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function electron carrier activity|GO:0009055||ISS  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT1G26390.1); Has 2742 Blast hits to 2652 proteins in 436 species: Archae - 26; Bacteria - 1103; Metazoa - 18; Fungi - 1094; Plants - 339; Viruses - 0; Other Eukaryotes - 162 (source: NCBI BLink).  protein_id AT1G26380.1p  transcript_id AT1G26380.1  protein_id AT1G26380.1p  transcript_id AT1G26380.1  
At1g26390	chr1:009130164	0.0	C/9130164-9131756	AT1G26390.1  CDS  gene_syn T1K7.23, T1K7_23  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function electron carrier activity|GO:0009055||ISS  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT1G26420.1); Has 2605 Blast hits to 2524 proteins in 398 species: Archae - 19; Bacteria - 1005; Metazoa - 7; Fungi - 1089; Plants - 331; Viruses - 0; Other Eukaryotes - 154 (source: NCBI BLink).  protein_id AT1G26390.1p  transcript_id AT1G26390.1  protein_id AT1G26390.1p  transcript_id AT1G26390.1  
At1g26400	chr1:009133291	0.0	C/9133291-9134874	AT1G26400.1  CDS  gene_syn T1K7.22, T1K7_22  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function electron carrier activity|GO:0009055||ISS  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT1G26390.1); Has 2512 Blast hits to 2422 proteins in 391 species: Archae - 9; Bacteria - 990; Metazoa - 7; Fungi - 1075; Plants - 330; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT1G26400.1p  transcript_id AT1G26400.1  protein_id AT1G26400.1p  transcript_id AT1G26400.1  
At1g26410	chr1:009138774	0.0	C/9138774-9140432	AT1G26410.1  CDS  gene_syn T1K7.21, T1K7_21  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_component cellular_component|GO:0005575||ND  go_function electron carrier activity|GO:0009055||ISS  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT1G26420.1); Has 2615 Blast hits to 2478 proteins in 397 species: Archae - 16; Bacteria - 1014; Metazoa - 4; Fungi - 1103; Plants - 356; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT1G26410.1p  transcript_id AT1G26410.1  protein_id AT1G26410.1p  transcript_id AT1G26410.1  
At1g26420	chr1:009141715	0.0	C/9141715-9143304	AT1G26420.1  CDS  gene_syn T1K7.20, T1K7_20  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function electron carrier activity|GO:0009055||ISS  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT1G26390.1); Has 2477 Blast hits to 2336 proteins in 370 species: Archae - 10; Bacteria - 986; Metazoa - 0; Fungi - 1049; Plants - 330; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).  protein_id AT1G26420.1p  transcript_id AT1G26420.1  protein_id AT1G26420.1p  transcript_id AT1G26420.1  
At1g26430	chr1:009143810	0.0	W/9143810-9143883	AT1G26430.1  tRNA  gene_syn 51948.TRNA-ASN-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asn (anticodon: GTT)  transcript_id AT1G26430.1  
At1g26440	chr1:009145413	0.0	C/9145413-9145673,9144995-9145340,9144827-9144921,9144362-9144736,9144109-9144273	AT1G26440.2  CDS  gene_syn ARABIDOPSIS THALIANA UREIDE PERMEASE 5, ATUPS5, T1K7.19, T1K7_19, UPS5  gene ATUPS5  function uptake assays in yeast mutants indicated this splice variant is a cellular importer for allantoin, uracil and xanthine  go_component endomembrane system|GO:0012505||IEA  go_process allantoin transport|GO:0015720|16738859|IGI  go_process uracil transport|GO:0015857|16738859|IGI  go_process xanthine transport|GO:0042906|16738859|IGI  go_function allantoin uptake transmembrane transporter activity|GO:0005274|16738859|IDA  go_function uracil transmembrane transporter activity|GO:0015210|16738859|IDA  go_function xanthine transmembrane transporter activity|GO:0042907|16738859|IDA  product ATUPS5 (ARABIDOPSIS THALIANA UREIDE PERMEASE 5); allantoin uptake transmembrane transporter/ uracil transmembrane transporter/ xanthine transmembrane transporter  note ARABIDOPSIS THALIANA UREIDE PERMEASE 5 (ATUPS5); FUNCTIONS IN: xanthine transmembrane transporter activity, uracil transmembrane transporter activity, allantoin uptake transmembrane transporter activity; INVOLVED IN: xanthine transport, uracil transport, allantoin transport; LOCATED IN: endomembrane system; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid elongase 3-ketoacyl-CoA synthase 1 (InterPro:IPR009834); BEST Arabidopsis thaliana protein match is: ATUPS1 (ARABIDOPSIS THALIANA UREIDE PERMEASE 1); allantoin uptake transmembrane transporter (TAIR:AT2G03590.1); Has 138 Blast hits to 132 proteins in 27 species: Archae - 0; Bacteria - 46; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G26440.2p  transcript_id AT1G26440.2  protein_id AT1G26440.2p  transcript_id AT1G26440.2  
At1g26440	chr1:009145413	0.0	C/9145413-9145673,9144995-9145340,9144827-9144921,9144362-9144736,9144109-9144273	AT1G26440.3  CDS  gene_syn ARABIDOPSIS THALIANA UREIDE PERMEASE 5, ATUPS5, T1K7.19, T1K7_19, UPS5  gene ATUPS5  function uptake assays in yeast mutants indicated this splice variant is a cellular importer for allantoin, uracil and xanthine  go_component endomembrane system|GO:0012505||IEA  go_process allantoin transport|GO:0015720|16738859|IGI  go_process uracil transport|GO:0015857|16738859|IGI  go_process xanthine transport|GO:0042906|16738859|IGI  go_function allantoin uptake transmembrane transporter activity|GO:0005274|16738859|IDA  go_function uracil transmembrane transporter activity|GO:0015210|16738859|IDA  go_function xanthine transmembrane transporter activity|GO:0042907|16738859|IDA  product ATUPS5 (ARABIDOPSIS THALIANA UREIDE PERMEASE 5); allantoin uptake transmembrane transporter/ uracil transmembrane transporter/ xanthine transmembrane transporter  note ARABIDOPSIS THALIANA UREIDE PERMEASE 5 (ATUPS5); FUNCTIONS IN: xanthine transmembrane transporter activity, uracil transmembrane transporter activity, allantoin uptake transmembrane transporter activity; INVOLVED IN: xanthine transport, uracil transport, allantoin transport; LOCATED IN: endomembrane system; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid elongase 3-ketoacyl-CoA synthase 1 (InterPro:IPR009834); BEST Arabidopsis thaliana protein match is: ATUPS1 (ARABIDOPSIS THALIANA UREIDE PERMEASE 1); allantoin uptake transmembrane transporter (TAIR:AT2G03590.1); Has 138 Blast hits to 132 proteins in 27 species: Archae - 0; Bacteria - 46; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G26440.3p  transcript_id AT1G26440.3  protein_id AT1G26440.3p  transcript_id AT1G26440.3  
At1g26440	chr1:009145413	0.0	C/9145413-9145673,9145301-9145340,9144995-9145114,9144827-9144921,9144362-9144736,9144109-9144273	AT1G26440.4  CDS  gene_syn ARABIDOPSIS THALIANA UREIDE PERMEASE 5, ATUPS5, T1K7.19, T1K7_19, UPS5  gene ATUPS5  function uptake assays in yeast mutants indicated this splice variant is a cellular importer for allantoin, uracil and xanthine  go_component endomembrane system|GO:0012505||IEA  product ATUPS5 (ARABIDOPSIS THALIANA UREIDE PERMEASE 5)  note ARABIDOPSIS THALIANA UREIDE PERMEASE 5 (ATUPS5); LOCATED IN: endomembrane system; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid elongase 3-ketoacyl-CoA synthase 1 (InterPro:IPR009834); BEST Arabidopsis thaliana protein match is: ATUPS4 (Arabidopsis thaliana ureide permease 4) (TAIR:AT2G03520.1); Has 136 Blast hits to 128 proteins in 27 species: Archae - 0; Bacteria - 42; Metazoa - 0; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G26440.4p  transcript_id AT1G26440.4  protein_id AT1G26440.4p  transcript_id AT1G26440.4  
At1g26440	chr1:009145413	0.0	C/9145413-9145673,9145301-9145340,9144995-9145195,9144827-9144918,9144362-9144736,9144109-9144273	AT1G26440.1  CDS  gene_syn ARABIDOPSIS THALIANA UREIDE PERMEASE 5, ATUPS5, T1K7.19, T1K7_19, UPS5  gene ATUPS5  function uptake assays in yeast mutants indicated this splice variant is a cellular importer for allantoin, uracil and xanthine  go_component endomembrane system|GO:0012505||IEA  product ATUPS5 (ARABIDOPSIS THALIANA UREIDE PERMEASE 5)  note UPS5; LOCATED IN: endomembrane system; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid elongase 3-ketoacyl-CoA synthase 1 (InterPro:IPR009834); BEST Arabidopsis thaliana protein match is: UPS2 (UREIDE PERMEASE 2) (TAIR:AT2G03530.2); Has 129 Blast hits to 128 proteins in 27 species: Archae - 0; Bacteria - 42; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G26440.1p  transcript_id AT1G26440.1  protein_id AT1G26440.1p  transcript_id AT1G26440.1  
At1g26450	chr1:009150012	0.0	C/9150012-9150063,9149643-9149882,9149525-9149552,9149003-9149276	AT1G26450.1  CDS  gene_syn T1K7.18, T1K7_18  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product beta-1,3-glucanase-related  note beta-1,3-glucanase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: PDCB4 (PLASMODESMATA CALLOSE-BINDING PROTEIN 4); callose binding / polysaccharide binding (TAIR:AT1G69295.1); Has 10543 Blast hits to 2817 proteins in 330 species: Archae - 10; Bacteria - 555; Metazoa - 2513; Fungi - 887; Plants - 692; Viruses - 195; Other Eukaryotes - 5691 (source: NCBI BLink).  protein_id AT1G26450.1p  transcript_id AT1G26450.1  protein_id AT1G26450.1p  transcript_id AT1G26450.1  
At1g26460	chr1:009151816	0.0	W/9151816-9152462,9152671-9152893,9152982-9153464,9153694-9153900,9153990-9154127,9154213-9154407	AT1G26460.1  CDS  gene_syn T1K7.17, T1K7_17  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: MEE40 (maternal effect embryo arrest 40) (TAIR:AT3G53700.1); Has 4278 Blast hits to 2050 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 59; Plants - 4056; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).  protein_id AT1G26460.1p  transcript_id AT1G26460.1  protein_id AT1G26460.1p  transcript_id AT1G26460.1  
At1g26470	chr1:009155134	0.0	W/9155134-9155253,9155340-9155412,9155605-9155656,9155755-9155824,9155950-9156036	AT1G26470.1  CDS  gene_syn T1K7.16, T1K7_16  go_component nucleus|GO:0005634||IEA  go_component H4/H2A histone acetyltransferase complex|GO:0043189||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, H4/H2A histone acetyltransferase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CT20 (InterPro:IPR012423); Has 39 Blast hits to 39 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 24; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G26470.1p  transcript_id AT1G26470.1  protein_id AT1G26470.1p  transcript_id AT1G26470.1  
At1g26480	chr1:009157764	0.0	C/9157764-9157845,9157383-9157689,9157221-9157308,9157035-9157144,9156803-9156951,9156659-9156723,9156573-9156578	AT1G26480.1  CDS  gene_syn GENERAL REGULATORY FACTOR 12, GF14 IOTA, GRF12, T1K7.15, T1K7_15  gene GRF12  function 14-3-3 protein GF14iota (grf12)  go_component cellular_component|GO:0005575||ND  go_function protein binding|GO:0005515||NAS  go_function protein phosphorylated amino acid binding|GO:0045309|10631267|TAS  product GRF12 (GENERAL REGULATORY FACTOR 12); protein binding / protein phosphorylated amino acid binding  note GENERAL REGULATORY FACTOR 12 (GRF12); FUNCTIONS IN: protein phosphorylated amino acid binding, protein binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: GRF9 (GENERAL REGULATORY FACTOR 9); calcium ion binding / protein binding / protein phosphorylated amino acid binding (TAIR:AT2G42590.3); Has 2106 Blast hits to 2097 proteins in 295 species: Archae - 0; Bacteria - 2; Metazoa - 1030; Fungi - 230; Plants - 541; Viruses - 0; Other Eukaryotes - 303 (source: NCBI BLink).  protein_id AT1G26480.1p  transcript_id AT1G26480.1  protein_id AT1G26480.1p  transcript_id AT1G26480.1  
At1g26490	chr1:009158183	0.0	W/9158183-9158255	AT1G26490.1  tRNA  gene_syn 51948.TRNA-ALA-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: TGC)  transcript_id AT1G26490.1  
At1g26500	chr1:009158380	0.0	W/9158380-9159897	AT1G26500.1  CDS  gene_syn T1K7.14, T1K7_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G62470.1); Has 8618 Blast hits to 3430 proteins in 103 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 74; Plants - 8411; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).  protein_id AT1G26500.1p  transcript_id AT1G26500.1  protein_id AT1G26500.1p  transcript_id AT1G26500.1  
At1g26510	chr1:009162175	0.0	C/9162175-9162910,9161890-9162099,9161554-9161606,9160024-9161053,9159906-9159937	AT1G26510.1  CDS  gene_syn T1K7.13, T1K7_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G15660.1); Has 976 Blast hits to 559 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 976; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G26510.1p  transcript_id AT1G26510.1  protein_id AT1G26510.1p  transcript_id AT1G26510.1  
At1g26520	chr1:009165424	0.0	C/9165424-9165594,9165125-9165342,9164769-9164883,9164405-9164494,9164161-9164322,9163945-9164064,9163748-9163858,9163586-9163667,9163448-9163503	AT1G26520.1  CDS  gene_syn T1K7.11, T1K7_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12) biosynthesis CobW-like (InterPro:IPR003495), Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal (InterPro:IPR011629); BEST Arabidopsis thaliana protein match is: PRLI-interacting factor L, putative (TAIR:AT1G15730.1); Has 5407 Blast hits to 5334 proteins in 932 species: Archae - 52; Bacteria - 3259; Metazoa - 131; Fungi - 175; Plants - 131; Viruses - 0; Other Eukaryotes - 1659 (source: NCBI BLink).  protein_id AT1G26520.1p  transcript_id AT1G26520.1  protein_id AT1G26520.1p  transcript_id AT1G26520.1  
At1g26530	chr1:009165890	0.0	W/9165890-9165960,9166030-9166089,9166194-9166299,9166476-9166516,9166601-9166621,9166763-9166850,9166965-9167021,9167107-9167185,9167285-9167298	AT1G26530.1  CDS  gene_syn T1K7.10, T1K7_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF652 (InterPro:IPR006984); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46230.1); Has 345 Blast hits to 345 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 142; Fungi - 99; Plants - 37; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT1G26530.1p  transcript_id AT1G26530.1  protein_id AT1G26530.1p  transcript_id AT1G26530.1  
At1g26540	chr1:009170355	0.0	C/9170355-9170795,9169578-9170000,9169330-9169494,9169161-9169248,9168937-9169064,9168755-9168836,9168559-9168666,9167783-9168435	AT1G26540.1  CDS  gene_syn T1K7.9, T1K7_9  go_component vacuole|GO:0005773|15539469|IDA  go_function RNA binding|GO:0003723||IEA  go_process biological_process|GO:0008150||ND  product agenet domain-containing protein  note agenet domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein (TAIR:AT2G47230.1); Has 651 Blast hits to 562 proteins in 98 species: Archae - 0; Bacteria - 24; Metazoa - 210; Fungi - 27; Plants - 225; Viruses - 3; Other Eukaryotes - 162 (source: NCBI BLink).  protein_id AT1G26540.1p  transcript_id AT1G26540.1  protein_id AT1G26540.1p  transcript_id AT1G26540.1  
At1g26550	chr1:009171800	0.0	W/9171800-9171932,9172081-9172190,9172441-9172583,9172674-9172716	AT1G26550.1  CDS  gene_syn T1K7.8, T1K7_8  go_function isomerase activity|GO:0016853||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function isomerase activity|GO:0016853||ISS  product peptidyl-prolyl cis-trans isomerase PPIC-type family protein  note peptidyl-prolyl cis-trans isomerase PPIC-type family protein; FUNCTIONS IN: isomerase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, PpiC-type (InterPro:IPR000297); BEST Arabidopsis thaliana protein match is: PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1); peptidyl-prolyl cis-trans isomerase (TAIR:AT2G18040.1); Has 4470 Blast hits to 4300 proteins in 976 species: Archae - 12; Bacteria - 3095; Metazoa - 206; Fungi - 127; Plants - 110; Viruses - 0; Other Eukaryotes - 920 (source: NCBI BLink).  protein_id AT1G26550.1p  transcript_id AT1G26550.1  protein_id AT1G26550.1p  transcript_id AT1G26550.1  
At1g26558	chr1:009175611	0.0	W/9175611-9177556	AT1G26558.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G26558.1  
At1g26558	chr1:009175642	0.0	W/9175642-9177598	AT1G26558.2  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G26558.2  
At1g26560	chr1:009178513	0.0	W/9178513-9178665,9179410-9179535,9179636-9179711,9179838-9179909,9180083-9180170,9180278-9180533,9180613-9180728,9180811-9181034,9181121-9181152,9181260-9181362,9181440-9181726	AT1G26560.1  CDS  gene_syn BETA GLUCOSIDASE 40, BGLU40, T1K7.7, T1K7_7  gene BGLU40  go_component chloroplast|GO:0009507|15028209|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU40 (BETA GLUCOSIDASE 40); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 40 (BGLU40); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: apoplast, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU41 (BETA GLUCOSIDASE 41); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT5G54570.1); Has 5807 Blast hits to 5536 proteins in 798 species: Archae - 100; Bacteria - 3154; Metazoa - 606; Fungi - 133; Plants - 859; Viruses - 0; Other Eukaryotes - 955 (source: NCBI BLink).  protein_id AT1G26560.1p  transcript_id AT1G26560.1  protein_id AT1G26560.1p  transcript_id AT1G26560.1  
At1g26570	chr1:009182801	0.0	W/9182801-9184246	AT1G26570.1  CDS  gene_syn ATUGD1, T1K7.6, T1K7_6, UDP-GLUCOSE DEHYDROGENASE 1, UGD1  gene UGD1  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_function coenzyme binding|GO:0050662||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_function UDP-glucose 6-dehydrogenase activity|GO:0003979||ISS  product UGD1 (UDP-GLUCOSE DEHYDROGENASE 1); NAD or NADH binding / UDP-glucose 6-dehydrogenase/ binding / catalytic/ coenzyme binding / oxidoreductase/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor  note UDP-GLUCOSE DEHYDROGENASE 1 (UGD1); FUNCTIONS IN: in 7 functions; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucose/GDP-mannose dehydrogenase, N-terminal (InterPro:IPR001732), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding (InterPro:IPR014028), UDP-glucose/GDP-mannose dehydrogenase, C-terminal (InterPro:IPR014027), NAD(P)-binding (InterPro:IPR016040), UDP-glucose/GDP-mannose dehydrogenase, dimerisation (InterPro:IPR014026), Nucleotide sugar dehydrogenase (InterPro:IPR017476); BEST Arabidopsis thaliana protein match is: UDP-glucose 6-dehydrogenase, putative (TAIR:AT3G29360.2); Has 10075 Blast hits to 10057 proteins in 1239 species: Archae - 198; Bacteria - 3905; Metazoa - 183; Fungi - 77; Plants - 116; Viruses - 14; Other Eukaryotes - 5582 (source: NCBI BLink).  protein_id AT1G26570.1p  transcript_id AT1G26570.1  protein_id AT1G26570.1p  transcript_id AT1G26570.1  
At1g26580	chr1:009185620	0.0	W/9185620-9185764,9185877-9187213	AT1G26580.1  CDS  gene_syn T1K7.5, T1K7_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: myb family transcription factor / ELM2 domain-containing protein (TAIR:AT2G03470.1); Has 82 Blast hits to 82 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G26580.1p  transcript_id AT1G26580.1  protein_id AT1G26580.1p  transcript_id AT1G26580.1  
At1g26590	chr1:009189624	0.0	W/9189624-9190709	AT1G26590.1  CDS  gene_syn T1K7.4, T1K7_4  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT1G26610.1); Has 9189 Blast hits to 5606 proteins in 176 species: Archae - 0; Bacteria - 202; Metazoa - 7781; Fungi - 146; Plants - 320; Viruses - 3; Other Eukaryotes - 737 (source: NCBI BLink).  protein_id AT1G26590.1p  transcript_id AT1G26590.1  protein_id AT1G26590.1p  transcript_id AT1G26590.1  
At1g26600	chr1:009191684	0.0	W/9191684-9192046	AT1G26600.1  CDS  gene_syn CLAVATA3/ESR-RELATED 9, CLE9, T1K7.3, T1K7_3  gene CLE9  function Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can partially replace CLV3 function in vivo.  go_component apoplast|GO:0048046|11457943|RCA  go_process signal transduction|GO:0007165||ISS  go_function receptor binding|GO:0005102||ISS  go_function protein binding|GO:0005515|11457943|ISS  product CLE9 (CLAVATA3/ESR-RELATED 9); protein binding / receptor binding  note CLAVATA3/ESR-RELATED 9 (CLE9); FUNCTIONS IN: protein binding, receptor binding; INVOLVED IN: signal transduction; LOCATED IN: apoplast; EXPRESSED IN: leaf lamina base, sepal, flower, petiole, leaf; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: CLE10 (CLAVATA3/ESR-RELATED 10); protein binding / receptor binding (TAIR:AT1G69320.1); Has 29 Blast hits to 29 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G26600.1p  transcript_id AT1G26600.1  protein_id AT1G26600.1p  transcript_id AT1G26600.1  
At1g26610	chr1:009193735	0.0	W/9193735-9195102	AT1G26610.1  CDS  gene_syn T1K7.2, T1K7_2  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT1G26590.1); Has 1803 Blast hits to 1532 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 1356; Fungi - 6; Plants - 361; Viruses - 6; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT1G26610.1p  transcript_id AT1G26610.1  protein_id AT1G26610.1p  transcript_id AT1G26610.1  
At1g26620	chr1:009198624	0.0	C/9198624-9198719,9197953-9198541,9195838-9197756	AT1G26620.1  CDS  gene_syn T1K7.1, T1K7_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF863, plant (InterPro:IPR008581); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69360.1); Has 154 Blast hits to 137 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 8; Fungi - 0; Plants - 130; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G26620.1p  transcript_id AT1G26620.1  protein_id AT1G26620.1p  transcript_id AT1G26620.1  
At1g26630	chr1:009205968	0.0	W/9205968-9206087,9206452-9206574,9206672-9206728,9206817-9206891,9206972-9207013	AT1G26630.2  CDS  gene_syn ATELF5A-2, ELF5A-2, EUKARYOTIC ELONGATION FACTOR 5A-2, FBR12, FUMONISIN B1-RESISTANT12, T24P13.1, T24P13_1  gene FBR12  function Eukaryotic translation initiation factor 5A-2. Involved in programmed cell death triggered as a response to pseudomonas syringae infection. Loss of function mutants are more resistant to infection.  go_function translation initiation factor activity|GO:0003743||IEA  go_component nucleus|GO:0005634|18633122|IDA  go_process translational initiation|GO:0006413||ISS  go_process response to wounding|GO:0009611|18633122|IEP  go_process programmed cell death|GO:0012501|18633122|IMP  go_process defense response to bacterium|GO:0042742|18633122|IMP  go_function translation initiation factor activity|GO:0003743||ISS  product FBR12 (FUMONISIN B1-RESISTANT12); translation initiation factor  note FUMONISIN B1-RESISTANT12 (FBR12); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: defense response to bacterium, translational initiation, response to wounding, programmed cell death; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Translation protein SH3-like, subgroup (InterPro:IPR014722), Eukaryotic initiation factor 5A hypusine (eIF-5A) (InterPro:IPR001884); BEST Arabidopsis thaliana protein match is: ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3); translation initiation factor (TAIR:AT1G69410.1); Has 970 Blast hits to 968 proteins in 295 species: Archae - 160; Bacteria - 0; Metazoa - 291; Fungi - 145; Plants - 194; Viruses - 0; Other Eukaryotes - 180 (source: NCBI BLink).  protein_id AT1G26630.2p  transcript_id AT1G26630.2  protein_id AT1G26630.2p  transcript_id AT1G26630.2  
At1g26630	chr1:009205968	0.0	W/9205968-9206087,9206452-9206574,9206672-9206728,9206817-9206891,9206994-9207098	AT1G26630.1  CDS  gene_syn ATELF5A-2, ELF5A-2, EUKARYOTIC ELONGATION FACTOR 5A-2, FBR12, FUMONISIN B1-RESISTANT12, T24P13.1, T24P13_1  gene FBR12  function Eukaryotic translation initiation factor 5A-2. Involved in programmed cell death triggered as a response to pseudomonas syringae infection. Loss of function mutants are more resistant to infection.  go_process response to wounding|GO:0009611|18633122|IEP  go_process response to bacterium|GO:0009617|18633122|IEP  go_process host programmed cell death induced by symbiont|GO:0034050|18633122|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function translation initiation factor activity|GO:0003743||IEA  go_component nucleus|GO:0005634|18633122|IDA  go_process translational initiation|GO:0006413||ISS  go_process programmed cell death|GO:0012501|18633122|IMP  go_process defense response to bacterium|GO:0042742|18633122|IMP  go_function translation initiation factor activity|GO:0003743||ISS  product FBR12 (FUMONISIN B1-RESISTANT12); translation initiation factor  note FUMONISIN B1-RESISTANT12 (FBR12); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Translation protein SH3-like, subgroup (InterPro:IPR014722), Eukaryotic initiation factor 5A hypusine (eIF-5A) (InterPro:IPR001884); BEST Arabidopsis thaliana protein match is: ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3); translation initiation factor (TAIR:AT1G69410.1); Has 987 Blast hits to 985 proteins in 296 species: Archae - 160; Bacteria - 0; Metazoa - 294; Fungi - 157; Plants - 196; Viruses - 0; Other Eukaryotes - 180 (source: NCBI BLink).  protein_id AT1G26630.1p  transcript_id AT1G26630.1  protein_id AT1G26630.1p  transcript_id AT1G26630.1  
At1g26640	chr1:009209709	0.0	C/9209709-9209766,9209274-9209504,9209019-9209116,9208896-9208938,9208750-9208811,9208609-9208665,9208485-9208520,9208321-9208398,9208154-9208226,9208017-9208079,9207817-9207920,9207620-9207715	AT1G26640.1  CDS  gene_syn T24P13.2, T24P13_2  go_process amino acid biosynthetic process|GO:0008652||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product aspartate/glutamate/uridylate kinase family protein  note aspartate/glutamate/uridylate kinase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: amino acid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aspartate/glutamate/uridylate kinase (InterPro:IPR001048); Has 393 Blast hits to 393 proteins in 151 species: Archae - 114; Bacteria - 162; Metazoa - 4; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT1G26640.1p  transcript_id AT1G26640.1  protein_id AT1G26640.1p  transcript_id AT1G26640.1  
At1g26650	chr1:009210335	0.0	W/9210335-9211342	AT1G26650.1  CDS  gene_syn T24P13.3, T24P13_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69430.1); Has 108 Blast hits to 107 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G26650.1p  transcript_id AT1G26650.1  protein_id AT1G26650.1p  transcript_id AT1G26650.1  
At1g26660	chr1:009212298	0.0	W/9212298-9212389,9212546-9212575,9212841-9212942,9213220-9213327,9213482-9213536,9213694-9213765	AT1G26660.1  CDS  gene_syn T24P13.26  go_component prefoldin complex|GO:0016272||IEA  go_process protein folding|GO:0006457||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component prefoldin complex|GO:0016272||ISS  go_process protein folding|GO:0006457||ISS  product c-myc binding protein, putative / prefoldin, putative  note c-myc binding protein, putative / prefoldin, putative; FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding; LOCATED IN: prefoldin complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin alpha-like (InterPro:IPR004127), Prefoldin (InterPro:IPR009053); Has 263 Blast hits to 263 proteins in 87 species: Archae - 12; Bacteria - 2; Metazoa - 174; Fungi - 30; Plants - 21; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT1G26660.1p  transcript_id AT1G26660.1  protein_id AT1G26660.1p  transcript_id AT1G26660.1  
At1g26665	chr1:009214510	0.0	W/9214510-9214733,9214823-9214903,9214991-9215093,9215177-9215266,9215355-9215426	AT1G26665.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: RNA polymerase II mediator complex protein-related (TAIR:AT5G41910.1); Has 223 Blast hits to 223 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 83; Plants - 24; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G26665.1p  transcript_id AT1G26665.1  protein_id AT1G26665.1p  transcript_id AT1G26665.1  
At1g26665	chr1:009214510	0.0	W/9214510-9214733,9214823-9214903,9214991-9215093,9215177-9215270,9215359-9215426	AT1G26665.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: RNA polymerase II mediator complex protein-related (TAIR:AT5G41910.1); Has 223 Blast hits to 223 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 83; Plants - 24; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G26665.2p  transcript_id AT1G26665.2  protein_id AT1G26665.2p  transcript_id AT1G26665.2  
At1g26670	chr1:009216103	0.0	W/9216103-9216199,9216860-9216918,9217008-9217196,9217373-9217543,9217641-9217793	AT1G26670.1  CDS  gene_syn ATVTI12, T24P13.5, T24P13_5, VESICAL TRANSPORT V-SNARE 12, VTI12, VTI1B  gene VTI1B  function member of VTI1 Gene Family. Normally localizes to the transgolgi network and plasma membrane. A dominant mutation (zip1) alters the subcellular localization of VTI12 and suppresses loss of function mutation (zag1) of VTI11. Interacts with members of the SYP family. Involved in protein trafficking to protein storage vacuoles.  go_component late endosome|GO:0005770|11115874|TAS  go_component trans-Golgi network|GO:0005802|11115874|TAS  go_component plasma membrane|GO:0005886|15797025|IDA  go_process protein targeting to vacuole|GO:0006623|17360696|IMP  go_process intra-Golgi vesicle-mediated transport|GO:0006891|11115874|TAS  go_process membrane fusion|GO:0006944|10831610|IPI  go_process intracellular transport|GO:0046907|15797025|TAS  go_function SNARE binding|GO:0000149|11115874|TAS  go_function receptor activity|GO:0004872|11115874|TAS  go_function soluble NSF attachment protein activity|GO:0005483|15797025|TAS  product VTI1B; SNARE binding / receptor/ soluble NSF attachment protein  note VTI1B; FUNCTIONS IN: soluble NSF attachment protein activity, SNARE binding, receptor activity; INVOLVED IN: membrane fusion, intracellular transport, intra-Golgi vesicle-mediated transport, protein targeting to vacuole; LOCATED IN: trans-Golgi network, late endosome, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vesicle transport v-SNARE (InterPro:IPR007705); BEST Arabidopsis thaliana protein match is: SGR4 (SHOOT GRAVITROPSIM 4); receptor (TAIR:AT5G39510.1); Has 598 Blast hits to 596 proteins in 150 species: Archae - 2; Bacteria - 9; Metazoa - 249; Fungi - 94; Plants - 112; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).  protein_id AT1G26670.1p  transcript_id AT1G26670.1  protein_id AT1G26670.1p  transcript_id AT1G26670.1  
At1g26680	chr1:009219552	0.0	W/9219552-9219632,9219713-9220019,9220092-9220207,9220294-9220635,9220740-9221127,9221209-9221327,9221505-9221925,9222007-9222125,9222205-9222537,9222657-9223193	AT1G26680.1  CDS  gene_syn T24P13.6, T24P13_6  go_component chloroplast|GO:0009507|18431481|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcriptional factor B3 family protein  note transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT2G24650.2); Has 360 Blast hits to 131 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 344; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G26680.1p  transcript_id AT1G26680.1  protein_id AT1G26680.1p  transcript_id AT1G26680.1  
At1g26690	chr1:009225470	0.0	C/9225470-9225682,9225180-9225389,9224570-9224646,9224299-9224443	AT1G26690.1  CDS  gene_syn T24P13.7, T24P13_7  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_process intracellular protein transport|GO:0006886||ISS  go_function protein transmembrane transporter activity|GO:0008320||ISS  product emp24/gp25L/p24 family protein  note emp24/gp25L/p24 family protein; FUNCTIONS IN: protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family protein (TAIR:AT1G69460.1); Has 1128 Blast hits to 1126 proteins in 174 species: Archae - 0; Bacteria - 0; Metazoa - 565; Fungi - 312; Plants - 129; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT1G26690.1p  transcript_id AT1G26690.1  protein_id AT1G26690.1p  transcript_id AT1G26690.1  
At1g26700	chr1:009228300	0.0	W/9228300-9228428,9228624-9228681,9228776-9229014,9229138-9229254,9229437-9229497,9229754-9229848,9230051-9230125,9230517-9230602,9230815-9230864,9230984-9231024,9231136-9231306,9231395-9231430,9231552-9231619,9231704-9231764,9231860-9232237	AT1G26700.1  CDS  gene_syn ATMLO14, MILDEW RESISTANCE LOCUS O 14, MLO14, T24P13.8, T24P13_8  gene MLO14  function A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO14 belongs to the clade I, with AtMLO4 and AtMLO11. The gene is expressed during early seedling growth, in developing primary root, and particularly in root tips of 10-day old seedlings; it was not expressed in leaves or flowers, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).  go_component integral to membrane|GO:0016021||IEA  go_process cell death|GO:0008219||IEA  go_component plasma membrane|GO:0005886||ISS  go_process defense response|GO:0006952||ISS  go_process cell death|GO:0008219||ISS  go_function calmodulin binding|GO:0005516||ISS  product MLO14 (MILDEW RESISTANCE LOCUS O 14); calmodulin binding  note MILDEW RESISTANCE LOCUS O 14 (MLO14); FUNCTIONS IN: calmodulin binding; INVOLVED IN: cell death, defense response; LOCATED IN: integral to membrane, plasma membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, LP.10 ten leaves visible, 4 leaf senescence stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326); BEST Arabidopsis thaliana protein match is: MLO11 (MILDEW RESISTANCE LOCUS O 11); calmodulin binding (TAIR:AT5G53760.2); Has 292 Blast hits to 286 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 286; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G26700.1p  transcript_id AT1G26700.1  protein_id AT1G26700.1p  transcript_id AT1G26700.1  
At1g26710	chr1:009232620	0.0	C/9232620-9233126	AT1G26710.1  CDS  gene_syn T24P13.9, T24P13_9  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26720.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G26710.1p  transcript_id AT1G26710.1  protein_id AT1G26710.1p  transcript_id AT1G26710.1  
At1g26720	chr1:009234303	0.0	C/9234303-9234812	AT1G26720.1  CDS  gene_syn T24P13.10, T24P13_10  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26710.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G26720.1p  transcript_id AT1G26720.1  protein_id AT1G26720.1p  transcript_id AT1G26720.1  
At1g26730	chr1:009241435	0.0	W/9241435-9241963,9242044-9242323,9242412-9242460,9242546-9242617,9242705-9242834,9242931-9243051,9243147-9243405,9243495-9243599,9243681-9243725,9243813-9244238,9244326-9244462,9244551-9244650	AT1G26730.1  CDS  gene_syn T24P13.11, T24P13_11  go_component plasma membrane|GO:0005886|17317660|IDA  go_component integral to membrane|GO:0016021||ISS  product EXS family protein / ERD1/XPR1/SYG1 family protein  note EXS family protein / ERD1/XPR1/SYG1 family protein; LOCATED IN: integral to membrane, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EXS, C-terminal (InterPro:IPR004342), SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G35350.1); Has 740 Blast hits to 718 proteins in 148 species: Archae - 0; Bacteria - 4; Metazoa - 233; Fungi - 274; Plants - 129; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).  protein_id AT1G26730.1p  transcript_id AT1G26730.1  protein_id AT1G26730.1p  transcript_id AT1G26730.1  
At1g26740	chr1:009246295	0.0	C/9246295-9246555,9245811-9245884,9245280-9245349	AT1G26740.1  CDS  gene_syn T24P13.27  go_component large ribosomal subunit|GO:0015934||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  product structural constituent of ribosome  note structural constituent of ribosome; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: large ribosomal subunit; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L32p (InterPro:IPR002677); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT1G69485.1); Has 76 Blast hits to 76 proteins in 26 species: Archae - 0; Bacteria - 21; Metazoa - 0; Fungi - 12; Plants - 31; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G26740.1p  transcript_id AT1G26740.1  protein_id AT1G26740.1p  transcript_id AT1G26740.1  
At1g26750	chr1:009246857	0.0	W/9246857-9246951,9247163-9247285,9247537-9247639,9247787-9248053	AT1G26750.1  CDS  gene_syn T24P13.13, T24P13_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G26750.1p  transcript_id AT1G26750.1  protein_id AT1G26750.1p  transcript_id AT1G26750.1  
At1g26760	chr1:009248304	0.0	C/9248304-9249941	AT1G26760.1  CDS  gene_syn ATXR1, SDG35, SET DOMAIN PROTEIN 35, T24P13.14, T24P13_14  gene SDG35  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product SDG35 (SET DOMAIN PROTEIN 35); binding  note SET DOMAIN PROTEIN 35 (SDG35); FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: ASHR2 (ASH1-RELATED PROTEIN 2) (TAIR:AT2G19640.2); Has 1784 Blast hits to 1769 proteins in 244 species: Archae - 8; Bacteria - 133; Metazoa - 759; Fungi - 365; Plants - 218; Viruses - 3; Other Eukaryotes - 298 (source: NCBI BLink).  protein_id AT1G26760.1p  transcript_id AT1G26760.1  protein_id AT1G26760.1p  transcript_id AT1G26760.1  
At1g26761	chr1:009250269	0.0	C/9250269-9251603	AT1G26761.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 197 Blast hits to 129 proteins in 53 species: Archae - 0; Bacteria - 148; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G26761.1p  transcript_id AT1G26761.1  protein_id AT1G26761.1p  transcript_id AT1G26761.1  
At1g26762	chr1:009253729	0.0	W/9253729-9254142	AT1G26762.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26270.1); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G26762.1p  transcript_id AT1G26762.1  protein_id AT1G26762.1p  transcript_id AT1G26762.1  
At1g26770	chr1:009259775	0.0	W/9259775-9259934,9260011-9260323,9260486-9260792	AT1G26770.2  CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN 10, ARABIDOPSIS THALIANA EXPANSIN A 10, ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, AT-EXP10, ATEXP10, ATEXPA10, ATHEXP ALPHA 1.1, EXP10, EXPANSIN 10, T24P13.15, T24P13_15  gene ATEXPA10  function Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.  go_component plant-type cell wall|GO:0009505|10931949|TAS  go_process syncytium formation|GO:0006949|16942607|IEP  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828|10931949|IMP  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828||ISS  go_process plant-type cell wall modification during multidimensional cell growth|GO:0009831||ISS  go_function structural constituent of cell wall|GO:0005199|10931949|TAS  product ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10); structural constituent of cell wall  note ARABIDOPSIS THALIANA EXPANSIN A 10 (ATEXPA10); FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: syncytium formation, plant-type cell wall modification during multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1) (TAIR:AT1G69530.2); Has 1460 Blast hits to 1459 proteins in 135 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 41; Plants - 1377; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT1G26770.2p  transcript_id AT1G26770.2  protein_id AT1G26770.2p  transcript_id AT1G26770.2  
At1g26770	chr1:009259805	0.0	W/9259805-9259934,9260011-9260323,9260486-9260792	AT1G26770.1  CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN 10, ARABIDOPSIS THALIANA EXPANSIN A 10, ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, AT-EXP10, ATEXP10, ATEXPA10, ATHEXP ALPHA 1.1, EXP10, EXPANSIN 10, T24P13.15, T24P13_15  gene ATEXPA10  function Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.  go_component plant-type cell wall|GO:0009505|10931949|TAS  go_process syncytium formation|GO:0006949|16942607|IEP  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828|10931949|IMP  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828||ISS  go_process plant-type cell wall modification during multidimensional cell growth|GO:0009831||ISS  go_function structural constituent of cell wall|GO:0005199|10931949|TAS  product ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10); structural constituent of cell wall  note ARABIDOPSIS THALIANA EXPANSIN A 10 (ATEXPA10); FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: syncytium formation, plant-type cell wall modification during multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1) (TAIR:AT1G69530.2); Has 1460 Blast hits to 1459 proteins in 135 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 41; Plants - 1377; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT1G26770.1p  transcript_id AT1G26770.1  protein_id AT1G26770.1p  transcript_id AT1G26770.1  
At1g26771	chr1:009263169	0.0	C/9263169-9263273	AT1G26771.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G26771.1p  transcript_id AT1G26771.1  protein_id AT1G26771.1p  transcript_id AT1G26771.1  
At1g26773	chr1:009264404	0.0	W/9264404-9264580	AT1G26773.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G26773.1p  transcript_id AT1G26773.1  protein_id AT1G26773.1p  transcript_id AT1G26773.1  
At1g26780	chr1:009271033	0.0	W/9271033-9271429,9271683-9272117,9272216-9272463	AT1G26780.2  CDS  gene_syn AtMYB117, MYB117, T24P13.16, T24P13_16, myb domain protein 117  gene MYB117  function putative transcription factor (MYB117)  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor (MYB117)  note myb domain protein 117 (MYB117); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB105 (myb domain protein 105); DNA binding / transcription factor (TAIR:AT1G69560.1).  protein_id AT1G26780.2p  transcript_id AT1G26780.2  protein_id AT1G26780.2p  transcript_id AT1G26780.2  
At1g26780	chr1:009271033	0.0	W/9271033-9271429,9271683-9272128	AT1G26780.1  CDS  gene_syn AtMYB117, MYB117, T24P13.16, T24P13_16, myb domain protein 117  gene MYB117  function putative transcription factor (MYB117)  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor (MYB117)  note myb domain protein 117 (MYB117); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB105 (myb domain protein 105); DNA binding / transcription factor (TAIR:AT1G69560.1); Has 6227 Blast hits to 5568 proteins in 370 species: Archae - 0; Bacteria - 0; Metazoa - 724; Fungi - 370; Plants - 3365; Viruses - 5; Other Eukaryotes - 1763 (source: NCBI BLink).  protein_id AT1G26780.1p  transcript_id AT1G26780.1  protein_id AT1G26780.1p  transcript_id AT1G26780.1  
At1g26790	chr1:009275229	0.0	C/9275229-9275312,9274940-9275092,9273857-9274810	AT1G26790.1  CDS  gene_syn T24P13.17, T24P13_17  go_component endomembrane system|GO:0012505||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product Dof-type zinc finger domain-containing protein  note Dof-type zinc finger domain-containing protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: endomembrane system; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT1G69570.1); Has 675 Blast hits to 658 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 6; Plants - 618; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT1G26790.1p  transcript_id AT1G26790.1  protein_id AT1G26790.1p  transcript_id AT1G26790.1  
At1g26795	chr1:009276419	0.0	W/9276419-9276874	AT1G26795.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product self-incompatibility protein-related  note self-incompatibility protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26796.1); Has 73 Blast hits to 69 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G26795.1p  transcript_id AT1G26795.1  protein_id AT1G26795.1p  transcript_id AT1G26795.1  
At1g26796	chr1:009278958	0.0	W/9278958-9279413	AT1G26796.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: self-incompatibility protein-related (TAIR:AT1G26795.1); Has 71 Blast hits to 67 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G26796.1p  transcript_id AT1G26796.1  protein_id AT1G26796.1p  transcript_id AT1G26796.1  
At1g26797	chr1:009280986	0.0	W/9280986-9281408	AT1G26797.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product self-incompatibility protein-related  note self-incompatibility protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: Expressed protein (TAIR:AT1G26798.1); Has 66 Blast hits to 62 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G26797.1p  transcript_id AT1G26797.1  protein_id AT1G26797.1p  transcript_id AT1G26797.1  
At1g26798	chr1:009281800	0.0	W/9281800-9282255	AT1G26798.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Expressed protein  note Expressed protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: self-incompatibility protein-related (TAIR:AT1G26797.1); Has 74 Blast hits to 70 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G26798.1p  transcript_id AT1G26798.1  protein_id AT1G26798.1p  transcript_id AT1G26798.1  
At1g26799	chr1:009283925	0.0	W/9283925-9284380	AT1G26799.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26796.1); Has 67 Blast hits to 63 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G26799.1p  transcript_id AT1G26799.1  protein_id AT1G26799.1p  transcript_id AT1G26799.1  
At1g26800	chr1:009285576	0.0	C/9285576-9286190	AT1G26800.1  CDS  gene_syn T24P13.19, T24P13_19  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G14200.1); Has 6695 Blast hits to 6676 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 2341; Fungi - 548; Plants - 2751; Viruses - 14; Other Eukaryotes - 1041 (source: NCBI BLink).  protein_id AT1G26800.1p  transcript_id AT1G26800.1  protein_id AT1G26800.1p  transcript_id AT1G26800.1  
At1g26810	chr1:009288544	0.0	C/9288544-9289327,9288217-9288452,9287842-9288123,9287625-9287753,9287354-9287533,9287165-9287272,9286862-9287074	AT1G26810.1  CDS  gene_syn GALACTOSYLTRANSFERASE1, GALT1, T24P13.20, T24P13_20  gene GALT1  function Encodes a protein with & 946;1,3-galactosyltransferase activity involved in the biosynthesis of the Lewis a epitope of certain glycoproteins.  go_component Golgi apparatus|GO:0005794|17630273|IDA  go_process Lewis a epitope biosynthetic process|GO:0010493|17630273|IMP  go_function UDP-galactose:N-glycan beta-1,3-galactosyltransferase activity|GO:0010488|17630273|IDA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product GALT1 (GALACTOSYLTRANSFERASE1); UDP-galactose:N-glycan beta-1,3-galactosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note GALACTOSYLTRANSFERASE1 (GALT1); FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups, UDP-galactose:N-glycan beta-1,3-galactosyltransferase activity; INVOLVED IN: Lewis a epitope biosynthetic process; LOCATED IN: Golgi apparatus; CONTAINS InterPro DOMAIN/s: Galectin, carbohydrate recognition domain (InterPro:IPR001079), Glycosyl transferase, family 31 (InterPro:IPR002659), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: galactosyltransferase family protein (TAIR:AT3G06440.1); Has 1743 Blast hits to 1733 proteins in 89 species: Archae - 0; Bacteria - 2; Metazoa - 1407; Fungi - 3; Plants - 305; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G26810.1p  transcript_id AT1G26810.1  protein_id AT1G26810.1p  transcript_id AT1G26810.1  
At1g26815	chr1:009290874	0.0	C/9290874-9291194	AT1G26815.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G22000.1).  protein_id AT1G26815.1p  transcript_id AT1G26815.1  protein_id AT1G26815.1p  transcript_id AT1G26815.1  
At1g26820	chr1:009293633	0.0	C/9293633-9293722,9293394-9293549,9293084-9293282,9292760-9292983	AT1G26820.1  CDS  gene_syn RIBONUCLEASE 3, RNS3, T24P13.23  gene RNS3  function Encodes ribonuclease RNS3.  go_component endomembrane system|GO:0012505||IEA  go_function RNA binding|GO:0003723||IEA  go_function ribonuclease T2 activity|GO:0033897||IEA  go_process aging|GO:0007568|8000425|IEP  go_function endoribonuclease activity|GO:0004521||ISS  product RNS3 (RIBONUCLEASE 3); RNA binding / endoribonuclease/ ribonuclease T2  note RIBONUCLEASE 3 (RNS3); FUNCTIONS IN: ribonuclease T2 activity, endoribonuclease activity, RNA binding; INVOLVED IN: aging; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease T2 (InterPro:IPR001568), Ribonuclease T2, active site (InterPro:IPR018188); BEST Arabidopsis thaliana protein match is: ribonuclease T2 family protein (TAIR:AT1G14220.1); Has 1995 Blast hits to 1994 proteins in 375 species: Archae - 0; Bacteria - 271; Metazoa - 145; Fungi - 170; Plants - 1317; Viruses - 7; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT1G26820.1p  transcript_id AT1G26820.1  protein_id AT1G26820.1p  transcript_id AT1G26820.1  
At1g26830	chr1:009296063	0.0	W/9296063-9296223,9296337-9298374	AT1G26830.1  CDS  gene_syn ARABIDOPSIS THALIANA CULLIN 3, ARABIDOPSIS THALIANA CULLIN 3A, ATCUL3, ATCUL3A, CUL3, CUL3A, CULLIN 3, CULLIN 3A, T24P13.25  gene ATCUL3  function Cullin, putative, similar to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with other components of E3 ligase complex suggesting it functions in RUB-modification. Forms complexes with BTB domain proteins forming a novel class of E3-based ubiquitin protein-ligase complexes. Mutant is early flowering and has a reduced sensitivity to far-red light. cul3a/cul3b homozygous/heterozygous plants are embryo lethal.  go_component ubiquitin ligase complex|GO:0000151|11019805|TAS  go_component SCF ubiquitin ligase complex|GO:0019005|15659098|IPI  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process cell cycle|GO:0007049||ISS  go_process response to red or far red light|GO:0009639|15659098|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|16045478|IGI  go_process positive regulation of flower development|GO:0009911|15659098|IMP  go_process endosperm development|GO:0009960|16045478|IGI  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|15618422|IPI  go_function protein binding|GO:0005515|15659098|IPI  go_function protein binding|GO:0005515|15749712|IPI  product ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3); protein binding / ubiquitin-protein ligase  note ARABIDOPSIS THALIANA CULLIN 3 (ATCUL3); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: in 6 processes; LOCATED IN: SCF ubiquitin ligase complex, ubiquitin ligase complex; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Cullin homology (InterPro:IPR016158), Cullin, N-terminal region (InterPro:IPR001373), Cullin repeat-like (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: CUL3B (CULLIN 3B); protein binding / ubiquitin-protein ligase (TAIR:AT1G69670.1); Has 1727 Blast hits to 1703 proteins in 173 species: Archae - 0; Bacteria - 6; Metazoa - 880; Fungi - 292; Plants - 203; Viruses - 0; Other Eukaryotes - 346 (source: NCBI BLink).  protein_id AT1G26830.1p  transcript_id AT1G26830.1  protein_id AT1G26830.1p  transcript_id AT1G26830.1  
At1g26840	chr1:009298822	0.0	W/9298822-9298941,9299036-9299082,9299182-9299286,9299387-9299467,9299566-9299677,9299758-9299820,9299907-9299994,9300139-9300203,9300329-9300425,9300527-9300603	AT1G26840.1  CDS  gene_syn ARABIDOPSIS THALIANA ORIGIN RECOGNITION COMPLEX PROTEIN 6, ATORC6, ORC6, ORIGIN RECOGNITION COMPLEX PROTEIN 6, ORIGIN RECOGNITION COMPLEX SUBUNIT 6, T2P11.3, T2P11_3  gene ORC6  function Origin Recognition Complex subunit 6. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors.  go_function DNA binding|GO:0003677||IEA  go_component origin recognition complex|GO:0000808|16179646|ISS  go_process DNA replication|GO:0006260|16179646|ISS  product ORC6 (ORIGIN RECOGNITION COMPLEX PROTEIN 6); DNA binding  note ORIGIN RECOGNITION COMPLEX PROTEIN 6 (ORC6); FUNCTIONS IN: DNA binding; INVOLVED IN: DNA replication; LOCATED IN: origin recognition complex; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Origin recognition complex subunit 6 (InterPro:IPR008721); Has 127 Blast hits to 127 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G26840.1p  transcript_id AT1G26840.1  protein_id AT1G26840.1p  transcript_id AT1G26840.1  
At1g26850	chr1:009302782	0.0	C/9302782-9303432,9302491-9302701,9302104-9302398,9301631-9302020,9301462-9301539,9301146-9301371	AT1G26850.1  CDS  gene_syn T2P11.4, T2P11_4  go_component membrane|GO:0016020|17432890|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  product dehydration-responsive family protein  note dehydration-responsive family protein; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive family protein (TAIR:AT4G18030.1); Has 516 Blast hits to 509 proteins in 51 species: Archae - 0; Bacteria - 55; Metazoa - 0; Fungi - 0; Plants - 457; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G26850.1p  transcript_id AT1G26850.1  protein_id AT1G26850.1p  transcript_id AT1G26850.1  
At1g26850	chr1:009302782	0.0	C/9302782-9303432,9302491-9302701,9302104-9302398,9301631-9302020,9301462-9301539,9301146-9301371	AT1G26850.2  CDS  gene_syn T2P11.4, T2P11_4  go_component membrane|GO:0016020|17432890|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  product dehydration-responsive family protein  note dehydration-responsive family protein; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive family protein (TAIR:AT4G18030.1); Has 516 Blast hits to 509 proteins in 51 species: Archae - 0; Bacteria - 55; Metazoa - 0; Fungi - 0; Plants - 457; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G26850.2p  transcript_id AT1G26850.2  protein_id AT1G26850.2p  transcript_id AT1G26850.2  
At1g26850	chr1:009302782	0.0	C/9302782-9303432,9302491-9302701,9302104-9302398,9301672-9302020,9301357-9301371	AT1G26850.3  CDS  gene_syn T2P11.4, T2P11_4  go_component membrane|GO:0016020|17432890|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  product dehydration-responsive family protein  note dehydration-responsive family protein; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive family protein (TAIR:AT4G18030.1); Has 519 Blast hits to 503 proteins in 51 species: Archae - 0; Bacteria - 55; Metazoa - 0; Fungi - 0; Plants - 460; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G26850.3p  transcript_id AT1G26850.3  protein_id AT1G26850.3p  transcript_id AT1G26850.3  
At1g26860	chr1:009304982	0.0	C/9304982-9305800	AT1G26860.1  mRNA_TE_gene  pseudo  gene_syn T2P11.5, T2P11_5  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G01700.1); similar to hypothetical protein 27.t00122 [Brassica oleracea] (GB:ABD65056.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)  
At1g26870	chr1:009312856	0.0	W/9312856-9312874,9313027-9313215,9313323-9313627,9314219-9314983	AT1G26870.1  CDS  gene_syn ANAC009, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 9, FEZ, T2P11.6, T2P11_6  gene FEZ  go_component nucleus|GO:0005634|19081078|IDA  go_process multicellular organismal development|GO:0007275||ISS  go_process response to auxin stimulus|GO:0009733|19081078|IEP  go_process positive regulation of asymmetric cell division|GO:0045770|19081078|IMP  go_process somatic stem cell division|GO:0048103|19081078|IMP  go_process root cap development|GO:0048829|19081078|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product FEZ (FEZ); transcription factor  note FEZ (FEZ); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, response to auxin stimulus, root cap development, somatic stem cell division, positive regulation of asymmetric cell division; LOCATED IN: nucleus; EXPRESSED IN: lateral root cap, columella root cap initial cell, root, leaf; EXPRESSED DURING: 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac094 (Arabidopsis NAC domain containing protein 94); transcription factor (TAIR:AT5G39820.1); Has 1608 Blast hits to 1604 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1608; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G26870.1p  transcript_id AT1G26870.1  protein_id AT1G26870.1p  transcript_id AT1G26870.1  
At1g26880	chr1:009316603	0.0	C/9316603-9316681,9316400-9316479,9315798-9315929	AT1G26880.2  CDS  gene_syn T2P11.7, T2P11_7  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L34 (RPL34A)  note 60S ribosomal protein L34 (RPL34A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e, conserved site (InterPro:IPR018065), Ribosomal protein L34e (InterPro:IPR008195); BEST Arabidopsis thaliana protein match is: RPL34 (RIBOSOMAL PROTEIN L34); structural constituent of ribosome (TAIR:AT1G69620.1); Has 577 Blast hits to 577 proteins in 230 species: Archae - 40; Bacteria - 0; Metazoa - 229; Fungi - 94; Plants - 100; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).  protein_id AT1G26880.2p  transcript_id AT1G26880.2  protein_id AT1G26880.2p  transcript_id AT1G26880.2  
At1g26880	chr1:009316603	0.0	C/9316603-9316681,9316400-9316479,9315820-9315929,9315640-9315733	AT1G26880.1  CDS  gene_syn T2P11.7, T2P11_7  go_component nucleolus|GO:0005730|15496452|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L34 (RPL34A)  note 60S ribosomal protein L34 (RPL34A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, nucleolus, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e, conserved site (InterPro:IPR018065), Ribosomal protein L34e (InterPro:IPR008195); BEST Arabidopsis thaliana protein match is: RPL34 (RIBOSOMAL PROTEIN L34); structural constituent of ribosome (TAIR:AT1G69620.1); Has 600 Blast hits to 600 proteins in 236 species: Archae - 43; Bacteria - 0; Metazoa - 239; Fungi - 98; Plants - 100; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).  protein_id AT1G26880.1p  transcript_id AT1G26880.1  protein_id AT1G26880.1p  transcript_id AT1G26880.1  
At1g26890	chr1:009317814	0.0	W/9317814-9318473,9318732-9318869,9319034-9319078	AT1G26890.1  CDS  gene_syn T2P11.8, T2P11_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G22000.1); Has 1770 Blast hits to 1285 proteins in 123 species: Archae - 0; Bacteria - 115; Metazoa - 389; Fungi - 120; Plants - 411; Viruses - 91; Other Eukaryotes - 644 (source: NCBI BLink).  protein_id AT1G26890.1p  transcript_id AT1G26890.1  protein_id AT1G26890.1p  transcript_id AT1G26890.1  
At1g26900	chr1:009319756	0.0	C/9319756-9321474	AT1G26900.1  CDS  gene_syn T2P11.9, T2P11_9  go_component mitochondrion|GO:0005739||IEA  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22410.1); Has 13007 Blast hits to 4816 proteins in 111 species: Archae - 0; Bacteria - 4; Metazoa - 55; Fungi - 27; Plants - 12685; Viruses - 0; Other Eukaryotes - 236 (source: NCBI BLink).  protein_id AT1G26900.1p  transcript_id AT1G26900.1  protein_id AT1G26900.1p  transcript_id AT1G26900.1  
At1g26910	chr1:009321709	0.0	W/9321709-9321718,9322072-9322573,9322660-9322813	AT1G26910.1  CDS  gene_syn T2P11.10, T2P11_10  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L10 (RPL10B)  note 60S ribosomal protein L10 (RPL10B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, membrane, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L10e (InterPro:IPR001197), Ribosomal protein L10e/L16 (InterPro:IPR016180), Ribosomal protein L10e, conserved site (InterPro:IPR018255); BEST Arabidopsis thaliana protein match is: SAC52 (SUPPRESSOR OF ACAULIS 52); structural constituent of ribosome (TAIR:AT1G14320.1); Has 1313 Blast hits to 1311 proteins in 457 species: Archae - 225; Bacteria - 9; Metazoa - 446; Fungi - 102; Plants - 110; Viruses - 0; Other Eukaryotes - 421 (source: NCBI BLink).  protein_id AT1G26910.1p  transcript_id AT1G26910.1  protein_id AT1G26910.1p  transcript_id AT1G26910.1  
At1g26911	chr1:009323740	0.0	W/9323740-9324200	AT1G26911.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G66590; cox19 family protein  
At1g26916	chr1:009327156	0.0	W/9327156-9327251	AT1G26916.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G26916.1p  transcript_id AT1G26916.1  protein_id AT1G26916.1p  transcript_id AT1G26916.1  
At1g26920	chr1:009329584	0.0	W/9329584-9330105	AT1G26920.1  CDS  gene_syn T2P11.11, T2P11_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69760.1); Has 28 Blast hits to 28 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 16; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G26920.1p  transcript_id AT1G26920.1  protein_id AT1G26920.1p  transcript_id AT1G26920.1  
At1g26921	chr1:009330956	0.0	C/9330956-9331105	AT1G26921.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G26921.1p  transcript_id AT1G26921.1  protein_id AT1G26921.1p  transcript_id AT1G26921.1  
At1g26930	chr1:009336211	0.0	C/9336211-9337476	AT1G26930.1  CDS  gene_syn T2P11.12, T2P11_12  go_component peroxisome|GO:0005777|12154131|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: peroxisome; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), WD40 repeat (InterPro:IPR001680), Kelch repeat type 2 (InterPro:IPR011498), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT2G02870.3); Has 5878 Blast hits to 3198 proteins in 197 species: Archae - 4; Bacteria - 215; Metazoa - 4694; Fungi - 17; Plants - 628; Viruses - 75; Other Eukaryotes - 245 (source: NCBI BLink).  protein_id AT1G26930.1p  transcript_id AT1G26930.1  protein_id AT1G26930.1p  transcript_id AT1G26930.1  
At1g26940	chr1:009343193	0.0	W/9343193-9343303,9343534-9343647,9343743-9343891,9344056-9344128,9344208-9344297,9344389-9344428,9344772-9344854,9344942-9344962	AT1G26940.1  CDS  gene_syn T2P11.13, T2P11_13  go_component endomembrane system|GO:0012505||IEA  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||IEA  go_process protein folding|GO:0006457||ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein  note peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: CYP71 (CYCLOPHILIN71); chromatin binding / histone binding / peptidyl-prolyl cis-trans isomerase (TAIR:AT3G44600.1); Has 7846 Blast hits to 7844 proteins in 1250 species: Archae - 78; Bacteria - 3271; Metazoa - 1001; Fungi - 616; Plants - 300; Viruses - 0; Other Eukaryotes - 2580 (source: NCBI BLink).  protein_id AT1G26940.1p  transcript_id AT1G26940.1  protein_id AT1G26940.1p  transcript_id AT1G26940.1  
At1g26945	chr1:009351571	0.0	W/9351571-9351699,9352319-9352474	AT1G26945.1  CDS  gene_syn KDR, KIDARI  gene KDR  function Encodes a basic helix-loop-helix (bHLH) protein involved in blue/far-red light signaling. Physically interacts with HFR1 and negatively regulates its activity.  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_function transcription regulator activity|GO:0030528||IEA  go_process response to light stimulus|GO:0009416|16786307|IMP  product KDR (KIDARI); transcription regulator  note KIDARI (KDR); FUNCTIONS IN: transcription regulator activity; INVOLVED IN: response to light stimulus; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: transcription regulator (TAIR:AT3G28857.1); Has 72 Blast hits to 72 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G26945.1p  transcript_id AT1G26945.1  protein_id AT1G26945.1p  transcript_id AT1G26945.1  
At1g26950	chr1:009353848	0.0	C/9353848-9354324	AT1G26950.1  mRNA_TE_gene  pseudo  gene_syn T2P11.14, T2P11_14  note Transposable element gene, similar to nucleic acid binding / ribonuclease H [Arabidopsis thaliana] (TAIR:AT5G33360.1); similar to RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H [Medicago truncatula] (GB:ABE81893.1); contains InterPro domain Ribonuclease H; (InterPro:IPR002156); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)  
At1g26960	chr1:009356126	0.0	W/9356126-9356231,9356313-9356683,9356949-9357239	AT1G26960.1  CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23, AtHB23, T2P11.15, T2P11_15  gene AtHB23  function Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to gibberellin stimulus|GO:0009739|17387478|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product AtHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23); DNA binding / transcription factor  note ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23 (AtHB23); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to gibberellin stimulus, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ATHB13; DNA binding / sequence-specific DNA binding / transcription factor (TAIR:AT1G69780.1); Has 9186 Blast hits to 9151 proteins in 557 species: Archae - 0; Bacteria - 2; Metazoa - 7383; Fungi - 169; Plants - 1442; Viruses - 5; Other Eukaryotes - 185 (source: NCBI BLink).  protein_id AT1G26960.1p  transcript_id AT1G26960.1  protein_id AT1G26960.1p  transcript_id AT1G26960.1  
At1g26970	chr1:009359826	0.0	W/9359826-9359883,9360006-9360352,9360450-9360588,9360773-9360903,9361103-9361666	AT1G26970.1  CDS  gene_syn T2P11.16  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT1G69790.1); Has 86480 Blast hits to 85409 proteins in 3166 species: Archae - 64; Bacteria - 7895; Metazoa - 38128; Fungi - 6767; Plants - 18696; Viruses - 364; Other Eukaryotes - 14566 (source: NCBI BLink).  protein_id AT1G26970.1p  transcript_id AT1G26970.1  protein_id AT1G26970.1p  transcript_id AT1G26970.1  
At1g26973	chr1:009363196	0.0	C/9363196-9363288	AT1G26973.1  miRNA  gene_syn MICRORNA 395, MICRORNA395A, MIR395, MIR395A  gene MIR395A  function Encodes a microRNA that targets both APS and AST family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: CUGAAGUGUUUGGGGGAACUC. Predicted targets are ATP sulfurylases.  go_process cellular response to sulfate starvation|GO:0009970|15200956|IEP  go_process gene silencing by miRNA|GO:0035195|15851028|IDA  product MIR395A (MICRORNA395A); miRNA  transcript_id AT1G26973.1  
At1g26975	chr1:009364471	0.0	W/9364471-9364570	AT1G26975.1  miRNA  gene_syn MICRORNA 395, MICRORNA395B, MIR395, MIR395B  gene MIR395B  function Encodes a microRNA that targets both APS and AST family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: CUGAAGUGUUUGGGGGGACUC. Predicted targets are ATP sulfurylases.  go_process cellular response to sulfate starvation|GO:0009970|15200956|IEP  go_process gene silencing by miRNA|GO:0035195|15851028|IDA  product MIR395B (MICRORNA395B); miRNA  transcript_id AT1G26975.1  
At1g26976	chr1:009364996	0.0	W/9364996-9365037,9365160-9365252,9365563-9365610	AT1G26976.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT1G26976.1p  transcript_id AT1G26976.1  protein_id AT1G26976.1p  transcript_id AT1G26976.1  
At1g26985	chr1:009367080	0.0	W/9367080-9367179	AT1G26985.1  miRNA  gene_syn MICRORNA 395, MICRORNA395C, MIR395, MIR395C  gene MIR395C  function Encodes a microRNA that targets both APS and AST family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: CUGAAGUGUUUGGGGGGACUC. Predicted targets are ATP sulfurylases.  go_process cellular response to sulfate starvation|GO:0009970|15200956|IEP  go_process gene silencing by miRNA|GO:0035195|15851028|IDA  product MIR395C (MICRORNA395C); miRNA  transcript_id AT1G26985.1  
At1g26990	chr1:009368531	0.0	C/9368531-9373180	AT1G26990.1  mRNA_TE_gene  pseudo  gene_syn T7N9.5, T7N9_5  note Transposable element gene, copia-like retrotransposon family, has a 2.0e-294 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At1g27000	chr1:009374068	0.0	W/9374068-9374122,9374228-9374289,9374375-9374452,9374532-9374607,9374705-9374775,9374888-9374989,9375080-9375169,9375297-9375371,9375608-9375640,9375742-9375813,9376004-9376066,9376199-9376314,9376401-9376422	AT1G27000.1  CDS  gene_syn T2P11.17  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product bZIP family transcription factor  note bZIP family transcription factor; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G02730.2); Has 122 Blast hits to 113 proteins in 16 species: Archae - 0; Bacteria - 8; Metazoa - 2; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT1G27000.1p  transcript_id AT1G27000.1  protein_id AT1G27000.1p  transcript_id AT1G27000.1  
At1g27008	chr1:009377062	0.0	C/9377062-9377244	AT1G27008.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G27008.1  
At1g27020	chr1:009378635	0.0	W/9378635-9378673,9378751-9378903,9379337-9379555,9379646-9379761,9379858-9380021,9380113-9380267,9380339-9380419	AT1G27020.1  CDS  gene_syn T7N9.8, T7N9_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27030.1); Has 377 Blast hits to 377 proteins in 117 species: Archae - 0; Bacteria - 208; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).  protein_id AT1G27020.1p  transcript_id AT1G27020.1  protein_id AT1G27020.1p  transcript_id AT1G27020.1  
At1g27030	chr1:009381842	0.0	W/9381842-9381880,9381957-9382109,9382201-9382419,9382508-9382623,9383100-9383263,9383371-9383525,9383626-9383712	AT1G27030.1  CDS  gene_syn T7N9.9, T7N9_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27020.1); Has 376 Blast hits to 376 proteins in 117 species: Archae - 0; Bacteria - 207; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).  protein_id AT1G27030.1p  transcript_id AT1G27030.1  protein_id AT1G27030.1p  transcript_id AT1G27030.1  
At1g27040	chr1:009389736	0.0	C/9389736-9389838,9389391-9389608,9387917-9388354,9386893-9387825	AT1G27040.2  CDS  gene_syn T7N9.10, T7N9_10  go_component membrane|GO:0016020||IEA  go_process oligopeptide transport|GO:0006857||IEA  go_function transporter activity|GO:0005215||ISS  product nitrate transporter, putative  note nitrate transporter, putative; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ATNRT1:2 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1:2); calcium ion binding / transporter (TAIR:AT1G69850.1); Has 3538 Blast hits to 3472 proteins in 653 species: Archae - 0; Bacteria - 1334; Metazoa - 428; Fungi - 255; Plants - 1119; Viruses - 0; Other Eukaryotes - 402 (source: NCBI BLink).  protein_id AT1G27040.2p  transcript_id AT1G27040.2  protein_id AT1G27040.2p  transcript_id AT1G27040.2  
At1g27040	chr1:009390016	0.0	C/9390016-9390018,9389736-9389847,9389391-9389608,9387917-9388354,9386893-9387825	AT1G27040.1  CDS  gene_syn T7N9.10, T7N9_10  go_component membrane|GO:0016020||IEA  go_process oligopeptide transport|GO:0006857||IEA  go_function transporter activity|GO:0005215||ISS  product nitrate transporter, putative  note nitrate transporter, putative; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ATNRT1:2 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1:2); calcium ion binding / transporter (TAIR:AT1G69850.1); Has 3538 Blast hits to 3472 proteins in 653 species: Archae - 0; Bacteria - 1334; Metazoa - 428; Fungi - 255; Plants - 1119; Viruses - 0; Other Eukaryotes - 402 (source: NCBI BLink).  protein_id AT1G27040.1p  transcript_id AT1G27040.1  protein_id AT1G27040.1p  transcript_id AT1G27040.1  
At1g27050	chr1:009391893	0.0	W/9391893-9392010,9392247-9392880,9393393-9393477,9393673-9394047,9394133-9394408	AT1G27050.1  CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 54, ATHB54, T7N9.11, T7N9_11  gene ATHB54  function Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ATHB54 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 54); nucleic acid binding / transcription factor  note ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 54 (ATHB54); FUNCTIONS IN: transcription factor activity, nucleic acid binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), RNA recognition motif, RNP-1 (InterPro:IPR000504), Homeodomain-like (InterPro:IPR009057), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ATHB-1 (ARABIDOPSIS THALIANA HOMEOBOX 1); DNA binding / protein homodimerization/ sequence-specific DNA binding / transcription activator/ transcription factor (TAIR:AT3G01470.1); Has 4153 Blast hits to 4145 proteins in 305 species: Archae - 2; Bacteria - 3; Metazoa - 2932; Fungi - 93; Plants - 1059; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT1G27050.1p  transcript_id AT1G27050.1  protein_id AT1G27050.1p  transcript_id AT1G27050.1  
At1g27060	chr1:009395023	0.0	W/9395023-9395218,9395300-9395452,9395534-9395692,9395766-9395924,9396017-9396148,9396228-9396392,9396477-9396673	AT1G27060.1  CDS  gene_syn T7N9.12, T7N9_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function Ran GTPase binding|GO:0008536||ISS  product regulator of chromosome condensation (RCC1) family protein  note regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: Ran GTPase binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Ran GTPase binding / chromatin binding / zinc ion binding (TAIR:AT5G12350.1); Has 15042 Blast hits to 4459 proteins in 302 species: Archae - 65; Bacteria - 1621; Metazoa - 6396; Fungi - 635; Plants - 1177; Viruses - 2; Other Eukaryotes - 5146 (source: NCBI BLink).  protein_id AT1G27060.1p  transcript_id AT1G27060.1  protein_id AT1G27060.1p  transcript_id AT1G27060.1  
At1g27070	chr1:009398645	0.0	C/9398645-9399225,9398386-9398551,9398120-9398297,9397825-9398039,9397584-9397729,9397347-9397494,9397119-9397187,9396945-9397040	AT1G27070.1  CDS  gene_syn T7N9.13, T7N9_13  product 5 -AMP-activated protein kinase-related  note 5 -AMP-activated protein kinase-related; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G03420.1); Has 573 Blast hits to 552 proteins in 161 species: Archae - 1; Bacteria - 66; Metazoa - 210; Fungi - 126; Plants - 98; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT1G27070.1p  transcript_id AT1G27070.1  protein_id AT1G27070.1p  transcript_id AT1G27070.1  
At1g27080	chr1:009400664	0.0	W/9400664-9400739,9401582-9401799,9402266-9402828,9402916-9403789	AT1G27080.1  CDS  gene_syn NITRATE TRANSPORTER 1.6, NRT1.6, T7N9.14, T7N9_14  gene NRT1.6  function Encodes a protein with low-affinity nitrate transporter activity that is expressed in the vascular tissue of the funiculus and the silique. This plasma membrane-localized enzyme is predicted to have 12 transmembrane domains. Plants lacking NRT1.6 have reduced levels of nitrate in their seeds and have increased levels of early embryonic developmental defects and seed abortion.  go_component plasma membrane|GO:0005886|19050168|IDA  go_process embryonic development ending in seed dormancy|GO:0009793|19050168|IMP  go_process suspensor development|GO:0010098|19050168|IMP  go_process cellular response to nitrogen levels|GO:0043562|19050168|IEP  go_process seed development|GO:0048316|19050168|IMP  go_process low affinity nitrate transport|GO:0080055|19050168|IDA  go_function transporter activity|GO:0005215||ISS  go_function low affinity nitrate transmembrane transporter activity|GO:0080054|19050168|IDA  product NRT1.6 (NITRATE TRANSPORTER 1.6); low affinity nitrate transmembrane transporter/ transporter  note NITRATE TRANSPORTER 1.6 (NRT1.6); FUNCTIONS IN: low affinity nitrate transmembrane transporter activity, transporter activity; INVOLVED IN: embryonic development ending in seed dormancy, suspensor development, low affinity nitrate transport, seed development, cellular response to nitrogen levels; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region, conserved site (InterPro:IPR018456), TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT1G69870.1); Has 2221 Blast hits to 2151 proteins in 362 species: Archae - 0; Bacteria - 343; Metazoa - 434; Fungi - 232; Plants - 1121; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).  protein_id AT1G27080.1p  transcript_id AT1G27080.1  protein_id AT1G27080.1p  transcript_id AT1G27080.1  
At1g27090	chr1:009405429	0.0	C/9405429-9406098,9405182-9405342,9404481-9404555,9404041-9404397	AT1G27090.1  CDS  gene_syn T7N9.15, T7N9_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24690.1); Has 12562 Blast hits to 6645 proteins in 564 species: Archae - 0; Bacteria - 1771; Metazoa - 5560; Fungi - 1132; Plants - 2457; Viruses - 75; Other Eukaryotes - 1567 (source: NCBI BLink).  protein_id AT1G27090.1p  transcript_id AT1G27090.1  protein_id AT1G27090.1p  transcript_id AT1G27090.1  
At1g27100	chr1:009410451	0.0	C/9410451-9411074,9407944-9408594,9407557-9407841	AT1G27100.1  CDS  gene_syn T7N9.16, T7N9_16  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF569 (InterPro:IPR007679), Actin_cross-linking (InterPro:IPR008999); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69900.1); Has 184 Blast hits to 118 proteins in 20 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 8; Plants - 166; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G27100.1p  transcript_id AT1G27100.1  protein_id AT1G27100.1p  transcript_id AT1G27100.1  
At1g27110	chr1:009415141	0.0	C/9415141-9415176,9414924-9415025,9414660-9414803,9414476-9414570,9414251-9414380,9414057-9414164,9413862-9413968,9413716-9413767,9413532-9413621,9413356-9413440,9413195-9413259,9413018-9413113	AT1G27110.3  CDS  gene_syn T7N9.17, T7N9_17  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT1G27150.1); Has 317 Blast hits to 313 proteins in 83 species: Archae - 11; Bacteria - 109; Metazoa - 78; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).  protein_id AT1G27110.3p  transcript_id AT1G27110.3  protein_id AT1G27110.3p  transcript_id AT1G27110.3  
At1g27110	chr1:009417357	0.0	C/9417357-9417392,9415790-9415879,9415384-9415536,9415141-9415239,9414924-9415025,9414660-9414803,9414476-9414570,9414251-9414380,9414057-9414164,9413862-9413968,9413716-9413767,9413532-9413621,9413356-9413440,9413195-9413259,9413018-9413113	AT1G27110.1  CDS  gene_syn T7N9.17, T7N9_17  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT1G27150.1); Has 358 Blast hits to 352 proteins in 93 species: Archae - 16; Bacteria - 129; Metazoa - 78; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT1G27110.1p  transcript_id AT1G27110.1  protein_id AT1G27110.1p  transcript_id AT1G27110.1  
At1g27110	chr1:009417357	0.0	C/9417357-9417392,9415790-9415879,9415384-9415536,9415141-9415239,9414924-9415025,9414660-9414803,9414476-9414570,9414251-9414380,9414057-9414164,9413862-9413968,9413716-9413767,9413532-9413621,9413356-9413440,9413195-9413259,9413071-9413109	AT1G27110.2  CDS  gene_syn T7N9.17, T7N9_17  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT1G27150.1); Has 356 Blast hits to 352 proteins in 93 species: Archae - 14; Bacteria - 129; Metazoa - 78; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT1G27110.2p  transcript_id AT1G27110.2  protein_id AT1G27110.2p  transcript_id AT1G27110.2  
At1g27120	chr1:009421389	0.0	W/9421389-9422244,9422344-9422597,9422668-9422958,9423032-9423160,9423235-9423408,9423501-9423608,9423701-9423910	AT1G27120.1  CDS  gene_syn T7N9.18, T7N9_18  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process protein amino acid glycosylation|GO:0006486||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product galactosyltransferase family protein  note galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galectin, carbohydrate recognition domain (InterPro:IPR001079), Glycosyl transferase, family 31 (InterPro:IPR002659), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: galactosyltransferase family protein (TAIR:AT5G62620.1); Has 1776 Blast hits to 1771 proteins in 89 species: Archae - 0; Bacteria - 2; Metazoa - 1406; Fungi - 2; Plants - 337; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G27120.1p  transcript_id AT1G27120.1  protein_id AT1G27120.1p  transcript_id AT1G27120.1  
At1g27130	chr1:009425582	0.0	W/9425582-9425908,9426241-9426597	AT1G27130.1  CDS  gene_syn ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 13, ATGSTU13, GLUTATHIONE S-TRANSFERASE 12, GST12, T7N9.190, T7N9_190  gene ATGSTU13  function Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTU13 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 13); glutathione transferase  note ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 13 (ATGSTU13); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: response to cadmium ion, toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTU14 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 14); glutathione transferase (TAIR:AT1G27140.1); Has 3403 Blast hits to 3400 proteins in 590 species: Archae - 0; Bacteria - 1487; Metazoa - 315; Fungi - 68; Plants - 1080; Viruses - 0; Other Eukaryotes - 453 (source: NCBI BLink).  protein_id AT1G27130.1p  transcript_id AT1G27130.1  protein_id AT1G27130.1p  transcript_id AT1G27130.1  
At1g27135	chr1:009427164	0.0	W/9427164-9427227,9427327-9427529	AT1G27135.1  CDS  function Encodes a Maternally expressed gene (MEG) family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10717.1); Has 13 Blast hits to 13 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27135.1p  transcript_id AT1G27135.1  protein_id AT1G27135.1p  transcript_id AT1G27135.1  
At1g27140	chr1:009427858	0.0	W/9427858-9428187,9428315-9428716	AT1G27140.1  CDS  gene_syn ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 14, ATGSTU14, GLUTATHIONE S-TRANSFERASE 13, GST13, T7N9.20, T7N9_20  gene ATGSTU14  function Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTU14 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 14); glutathione transferase  note ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 14 (ATGSTU14); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTU13 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 13); glutathione transferase (TAIR:AT1G27130.1); Has 3072 Blast hits to 3069 proteins in 639 species: Archae - 0; Bacteria - 1370; Metazoa - 198; Fungi - 55; Plants - 1032; Viruses - 0; Other Eukaryotes - 417 (source: NCBI BLink).  protein_id AT1G27140.1p  transcript_id AT1G27140.1  protein_id AT1G27140.1p  transcript_id AT1G27140.1  
At1g27150	chr1:009429177	0.0	W/9429177-9429269,9429614-9429766,9429853-9429951,9430110-9430211,9430291-9430434,9430550-9430644,9430751-9430880,9430956-9431060,9431165-9431271,9431347-9431398,9431482-9431571,9431661-9431745,9431831-9431895,9431982-9432068	AT1G27150.1  CDS  gene_syn T7N9.21, T7N9_21  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT1G27110.1); Has 297 Blast hits to 297 proteins in 82 species: Archae - 4; Bacteria - 114; Metazoa - 76; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT1G27150.1p  transcript_id AT1G27150.1  protein_id AT1G27150.1p  transcript_id AT1G27150.1  
At1g27160	chr1:009432588	0.0	W/9432588-9433190	AT1G27160.1  CDS  gene_syn T7N9.22, T7N9_22  go_component cytoplasm|GO:0005737||IEA  go_process translation|GO:0006412||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_process valyl-tRNA aminoacylation|GO:0006438||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function valine-tRNA ligase activity|GO:0004832||IEA  go_function ATP binding|GO:0005524||IEA  product valyl-tRNA synthetase / valine--tRNA ligase-related  note valyl-tRNA synthetase / valine--tRNA ligase-related; FUNCTIONS IN: valine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: translation, valyl-tRNA aminoacylation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Valyl-tRNA synthetase, class Ia (InterPro:IPR002303), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080); BEST Arabidopsis thaliana protein match is: TWN2 (TWIN 2); ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / valine-tRNA ligase (TAIR:AT1G14610.1); Has 4382 Blast hits to 4381 proteins in 1396 species: Archae - 87; Bacteria - 2636; Metazoa - 205; Fungi - 90; Plants - 54; Viruses - 0; Other Eukaryotes - 1310 (source: NCBI BLink).  protein_id AT1G27160.1p  transcript_id AT1G27160.1  protein_id AT1G27160.1p  transcript_id AT1G27160.1  
At1g27170	chr1:009433577	0.0	W/9433577-9434049,9435287-9436403,9436488-9436898,9436986-9438584,9438665-9439219	AT1G27170.2  CDS  gene_syn T7N9.23, T7N9_23  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product ATP binding / protein binding / transmembrane receptor  note ATP binding / protein binding / transmembrane receptor; FUNCTIONS IN: protein binding, transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT1G27180.1).  protein_id AT1G27170.2p  transcript_id AT1G27170.2  protein_id AT1G27170.2p  transcript_id AT1G27170.2  
At1g27170	chr1:009434718	0.0	W/9434718-9435190,9435287-9436403,9436488-9436898,9436986-9438584,9438665-9439219	AT1G27170.1  CDS  gene_syn T7N9.23, T7N9_23  go_component chloroplast|GO:0009507|15028209|IDA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product ATP binding / protein binding / transmembrane receptor  note ATP binding / protein binding / transmembrane receptor; FUNCTIONS IN: transmembrane receptor activity, protein binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT1G27180.1); Has 61586 Blast hits to 25200 proteins in 940 species: Archae - 44; Bacteria - 4230; Metazoa - 15526; Fungi - 1004; Plants - 36967; Viruses - 8; Other Eukaryotes - 3807 (source: NCBI BLink).  protein_id AT1G27170.1p  transcript_id AT1G27170.1  protein_id AT1G27170.1p  transcript_id AT1G27170.1  
At1g27180	chr1:009439859	0.0	W/9439859-9440335,9441296-9441777,9441867-9443016,9443103-9443513,9443588-9445189,9445270-9445818	AT1G27180.1  CDS  gene_syn T7N9.24, T7N9_24  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, protein binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: ATP binding / protein binding / transmembrane receptor (TAIR:AT1G27170.1); Has 58076 Blast hits to 23700 proteins in 885 species: Archae - 52; Bacteria - 3644; Metazoa - 14396; Fungi - 777; Plants - 35721; Viruses - 12; Other Eukaryotes - 3474 (source: NCBI BLink).  protein_id AT1G27180.1p  transcript_id AT1G27180.1  protein_id AT1G27180.1p  transcript_id AT1G27180.1  
At1g27190	chr1:009446923	0.0	C/9446923-9448728	AT1G27190.1  CDS  gene_syn T7N9.25, T7N9_25  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT1G69990.1); Has 68357 Blast hits to 43210 proteins in 1433 species: Archae - 27; Bacteria - 4242; Metazoa - 15832; Fungi - 1729; Plants - 40190; Viruses - 134; Other Eukaryotes - 6203 (source: NCBI BLink).  protein_id AT1G27190.1p  transcript_id AT1G27190.1  protein_id AT1G27190.1p  transcript_id AT1G27190.1  
At1g27200	chr1:009449812	0.0	C/9449812-9451539	AT1G27200.1  CDS  gene_syn T7N9.26, T7N9_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40720.1); Has 205 Blast hits to 205 proteins in 57 species: Archae - 0; Bacteria - 108; Metazoa - 2; Fungi - 4; Plants - 62; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G27200.1p  transcript_id AT1G27200.1  protein_id AT1G27200.1p  transcript_id AT1G27200.1  
At1g27210	chr1:009457057	0.0	C/9457057-9457917,9456875-9456974,9456262-9456788,9455771-9456147,9455669-9455681	AT1G27210.1  CDS  gene_syn T7N9.27, T7N9_27  go_component chloroplast|GO:0009507||IEA  go_function binding|GO:0005488||IEA  product binding  note binding; FUNCTIONS IN: binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT1G59850.1); Has 384 Blast hits to 309 proteins in 86 species: Archae - 2; Bacteria - 35; Metazoa - 89; Fungi - 48; Plants - 103; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT1G27210.1p  transcript_id AT1G27210.1  protein_id AT1G27210.1p  transcript_id AT1G27210.1  
At1g27213	chr1:009460035	0.0	C/9460035-9460187	AT1G27213.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G27213.1p  transcript_id AT1G27213.1  protein_id AT1G27213.1p  transcript_id AT1G27213.1  
At1g27220	chr1:009463806	0.0	W/9463806-9463945,9464080-9464204,9465155-9465444	AT1G27220.1  CDS  gene_syn F17L21.2  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  product paired amphipathic helix repeat-containing protein  note paired amphipathic helix repeat-containing protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: paired amphipathic helix repeat-containing protein (TAIR:AT1G27250.1); Has 499 Blast hits to 451 proteins in 116 species: Archae - 0; Bacteria - 10; Metazoa - 174; Fungi - 107; Plants - 191; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G27220.1p  transcript_id AT1G27220.1  protein_id AT1G27220.1p  transcript_id AT1G27220.1  
At1g27240	chr1:009466237	0.0	W/9466237-9466376,9466493-9466739,9466815-9466916,9467005-9467076	AT1G27240.1  CDS  gene_syn F17L21.3  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function molecular_function|GO:0003674||ND  product paired amphipathic helix repeat-containing protein  note paired amphipathic helix repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: paired amphipathic helix repeat-containing protein (TAIR:AT1G24210.1); Has 364 Blast hits to 354 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 169; Fungi - 87; Plants - 100; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G27240.1p  transcript_id AT1G27240.1  protein_id AT1G27240.1p  transcript_id AT1G27240.1  
At1g27250	chr1:009468568	0.0	W/9468568-9468728,9468864-9468994,9469513-9469634	AT1G27250.1  CDS  gene_syn F17L21.4  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function molecular_function|GO:0003674||ND  product paired amphipathic helix repeat-containing protein  note paired amphipathic helix repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: paired amphipathic helix repeat-containing protein (TAIR:AT1G27220.1); Has 398 Blast hits to 380 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 176; Fungi - 97; Plants - 111; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G27250.1p  transcript_id AT1G27250.1  protein_id AT1G27250.1p  transcript_id AT1G27250.1  
At1g27260	chr1:009469948	0.0	W/9469948-9470054,9470131-9470400,9470497-9470614,9470717-9470818,9470896-9470967	AT1G27260.1  CDS  gene_syn F17L21.32  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function molecular_function|GO:0003674||ND  product paired amphipathic helix repeat-containing protein  note paired amphipathic helix repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: paired amphipathic helix repeat-containing protein (TAIR:AT1G23810.1); Has 725 Blast hits to 375 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 354; Fungi - 158; Plants - 192; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G27260.1p  transcript_id AT1G27260.1  protein_id AT1G27260.1p  transcript_id AT1G27260.1  
At1g27270	chr1:009472077	0.0	W/9472077-9472219,9472303-9472596,9472693-9472810,9472897-9472998,9473081-9473149	AT1G27270.1  CDS  gene_syn F17L21.5, F17L21_5  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function molecular_function|GO:0003674||ND  product paired amphipathic helix repeat-containing protein  note paired amphipathic helix repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: paired amphipathic helix repeat-containing protein (TAIR:AT1G23810.1); Has 425 Blast hits to 345 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 191; Fungi - 74; Plants - 147; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G27270.1p  transcript_id AT1G27270.1  protein_id AT1G27270.1p  transcript_id AT1G27270.1  
At1g27280	chr1:009474027	0.0	W/9474027-9474103,9474196-9474456,9474565-9474754,9474841-9474990	AT1G27280.1  CDS  gene_syn F17L21.6, F17L21_6  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function molecular_function|GO:0003674||ND  product paired amphipathic helix repeat-containing protein  note paired amphipathic helix repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: paired amphipathic helix repeat-containing protein (TAIR:AT1G24230.1); Has 453 Blast hits to 367 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 178; Fungi - 99; Plants - 164; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G27280.1p  transcript_id AT1G27280.1  protein_id AT1G27280.1p  transcript_id AT1G27280.1  
At1g27285	chr1:009476197	0.0	W/9476197-9480516	AT1G27285.1  mRNA_TE_gene  pseudo  gene_syn F17L21.7, F17L21_7  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At1g27290	chr1:009481788	0.0	W/9481788-9482199,9482560-9482576	AT1G27290.1  CDS  gene_syn F17L21.8, F17L21_8  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27290.1p  transcript_id AT1G27290.1  protein_id AT1G27290.1p  transcript_id AT1G27290.1  
At1g27290	chr1:009481788	0.0	W/9481788-9482199,9482560-9482576	AT1G27290.2  CDS  gene_syn F17L21.8, F17L21_8  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27290.2p  transcript_id AT1G27290.2  protein_id AT1G27290.2p  transcript_id AT1G27290.2  
At1g27300	chr1:009483324	0.0	W/9483324-9483464,9483733-9484194	AT1G27300.1  CDS  gene_syn F17L21.9, F17L21_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 36 Blast hits to 36 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 5; Plants - 17; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G27300.1p  transcript_id AT1G27300.1  protein_id AT1G27300.1p  transcript_id AT1G27300.1  
At1g27310	chr1:009485494	0.0	C/9485494-9485790,9484615-9484686	AT1G27310.1  CDS  gene_syn F17L21.10, F17L21_10, NTF2A, NUCLEAR TRANSPORT FACTOR 2A  gene NTF2A  function Encodes an ortholog of yeast NTF2, a nuclear envelop transport protein that functions as the nuclear import receptor for RanGDP, an essential player in nucleocytoplasmic transport.  go_component intracellular|GO:0005622||ISS  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleus|GO:0005634||ISS  go_component nuclear envelope|GO:0005635|16428596|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process protein import into nucleus|GO:0006606|16428596|IGI  go_process protein import into nucleus|GO:0006606|16428596|IMP  go_process protein import into nucleus|GO:0006606||ISS  go_process nucleocytoplasmic transport|GO:0006913|16428596|IGI  go_function Ran GTPase binding|GO:0008536|16428596|IGI  go_function Ran GTPase binding|GO:0008536|16428596|IPI  go_function protein transporter activity|GO:0008565||ISS  product NTF2A (NUCLEAR TRANSPORT FACTOR 2A); Ran GTPase binding / protein transporter  note NUCLEAR TRANSPORT FACTOR 2A (NTF2A); FUNCTIONS IN: protein transporter activity, Ran GTPase binding; INVOLVED IN: nucleocytoplasmic transport, protein import into nucleus; LOCATED IN: nuclear envelope, nucleus, intracellular, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222); BEST Arabidopsis thaliana protein match is: NTF2B (NUCLEAR TRANSPORT FACTOR 2B); Ran GTPase binding / protein transporter (TAIR:AT1G27970.1); Has 716 Blast hits to 716 proteins in 165 species: Archae - 0; Bacteria - 0; Metazoa - 356; Fungi - 160; Plants - 131; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT1G27310.1p  transcript_id AT1G27310.1  protein_id AT1G27310.1p  transcript_id AT1G27310.1  
At1g27320	chr1:009487780	0.0	W/9487780-9488286,9488568-9488849,9489052-9489221,9489310-9489522,9489619-9489805,9489899-9489950,9490065-9490294,9490383-9490481,9490568-9491673,9491763-9492027	AT1G27320.1  CDS  gene_syn AHK3, ARABIDOPSIS HISTIDINE KINASE 3, F17L21.11, F17L21_11  gene AHK3  function Encodes a histidine kinases, a cytokinin receptor that controls cytokinin-mediated leaf longevity through a specific phosphorylation of the response regulator, ARR2.  go_component plasma membrane|GO:0005886|16407152|IDA  go_process response to osmotic stress|GO:0006970|18077346|IMP  go_process response to cold|GO:0009409|18077346|IEP  go_process response to water deprivation|GO:0009414|18077346|IEP  go_process response to salt stress|GO:0009651|18077346|IEP  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_process regulation of seed germination|GO:0010029|16361392|IMP  go_process leaf senescence|GO:0010150|16407152|IMP  go_process regulation of chlorophyll catabolic process|GO:0010271|16361392|IMP  go_process defense response to bacterium|GO:0042742|19129491|IDA  go_process defense response to bacterium|GO:0042742|19129491|IMP  go_process regulation of shoot development|GO:0048831|16361392|IMP  go_function protein histidine kinase activity|GO:0004673|16407152|IMP  go_function protein histidine kinase activity|GO:0004673||ISS  go_function osmosensor activity|GO:0005034|18077346|IGI  go_function cytokinin receptor activity|GO:0009884|15923327|TAS  go_function cytokinin receptor activity|GO:0009884|16361392|TAS  product AHK3 (ARABIDOPSIS HISTIDINE KINASE 3); cytokinin receptor/ osmosensor/ protein histidine kinase  note ARABIDOPSIS HISTIDINE KINASE 3 (AHK3); FUNCTIONS IN: osmosensor activity, cytokinin receptor activity, protein histidine kinase activity; INVOLVED IN: in 10 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), CHASE (InterPro:IPR006189), Signal transduction histidine kinase, core (InterPro:IPR005467), ATP-binding region, ATPase-like (InterPro:IPR003594), CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver region (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region (InterPro:IPR003661), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: AHK2 (ARABIDOPSIS HISTIDINE KINASE 2); cytokinin receptor/ osmosensor/ protein histidine kinase (TAIR:AT5G35750.1); Has 72905 Blast hits to 64764 proteins in 1775 species: Archae - 479; Bacteria - 60767; Metazoa - 23; Fungi - 1563; Plants - 1376; Viruses - 28; Other Eukaryotes - 8669 (source: NCBI BLink).  protein_id AT1G27320.1p  transcript_id AT1G27320.1  protein_id AT1G27320.1p  transcript_id AT1G27320.1  
At1g27330	chr1:009493064	0.0	W/9493064-9493066,9493523-9493679,9493852-9493898	AT1G27330.1  CDS  gene_syn F17L21.12, F17L21_12  go_component cellular_component|GO:0005575||ND  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ribosome associated membrane RAMP4 (InterPro:IPR010580); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27350.1); Has 267 Blast hits to 267 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 183; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G27330.1p  transcript_id AT1G27330.1  protein_id AT1G27330.1p  transcript_id AT1G27330.1  
At1g27340	chr1:009495741	0.0	W/9495741-9495892,9496606-9497857	AT1G27340.1  CDS  gene_syn F17L21.13, F17L21_13  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G15710.1); Has 566 Blast hits to 560 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 563; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G27340.1p  transcript_id AT1G27340.1  protein_id AT1G27340.1p  transcript_id AT1G27340.1  
At1g27350	chr1:009499301	0.0	C/9499301-9499303,9498628-9498784,9498319-9498365	AT1G27350.1  CDS  gene_syn F17L21.31  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ribosome associated membrane RAMP4 (InterPro:IPR010580); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27330.1); Has 267 Blast hits to 267 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 183; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G27350.1p  transcript_id AT1G27350.1  protein_id AT1G27350.1p  transcript_id AT1G27350.1  
At1g27360	chr1:009502139	0.0	W/9502139-9502800,9502961-9503082,9503215-9503466,9503570-9503715	AT1G27360.1  CDS  gene_syn F17L21.14, F17L21_14  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product squamosa promoter-binding protein-like 11 (SPL11)  note squamosa promoter-binding protein-like 11 (SPL11); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-binding protein-like 10 (SPL10) (TAIR:AT1G27370.4); Has 550 Blast hits to 550 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 550; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27360.1p  transcript_id AT1G27360.1  protein_id AT1G27360.1p  transcript_id AT1G27360.1  
At1g27360	chr1:009502139	0.0	W/9502139-9502800,9502961-9503082,9503215-9503466,9503570-9503715	AT1G27360.2  CDS  gene_syn F17L21.14, F17L21_14  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product squamosa promoter-binding protein-like 11 (SPL11)  note squamosa promoter-binding protein-like 11 (SPL11); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-binding protein-like 10 (SPL10) (TAIR:AT1G27370.4); Has 550 Blast hits to 550 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 550; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27360.2p  transcript_id AT1G27360.2  protein_id AT1G27360.2p  transcript_id AT1G27360.2  
At1g27360	chr1:009502139	0.0	W/9502139-9502800,9502961-9503082,9503215-9503466,9503570-9503715	AT1G27360.3  CDS  gene_syn F17L21.14, F17L21_14  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product squamosa promoter-binding protein-like 11 (SPL11)  note squamosa promoter-binding protein-like 11 (SPL11); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-binding protein-like 10 (SPL10) (TAIR:AT1G27370.4); Has 550 Blast hits to 550 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 550; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27360.3p  transcript_id AT1G27360.3  protein_id AT1G27360.3p  transcript_id AT1G27360.3  
At1g27360	chr1:009502139	0.0	W/9502139-9502800,9502961-9503082,9503215-9503466,9503570-9503715	AT1G27360.4  CDS  gene_syn F17L21.14, F17L21_14  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product squamosa promoter-binding protein-like 11 (SPL11)  note squamosa promoter-binding protein-like 11 (SPL11); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-binding protein-like 10 (SPL10) (TAIR:AT1G27370.4); Has 550 Blast hits to 550 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 550; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27360.4p  transcript_id AT1G27360.4  protein_id AT1G27360.4p  transcript_id AT1G27360.4  
At1g27370	chr1:009506333	0.0	C/9506333-9506997,9506082-9506203,9505718-9505966,9505454-9505608	AT1G27370.1  CDS  gene_syn F17L21.15, F17L21_15  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product squamosa promoter-binding protein-like 10 (SPL10)  note squamosa promoter-binding protein-like 10 (SPL10); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-binding protein-like 11 (SPL11) (TAIR:AT1G27360.4); Has 557 Blast hits to 557 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 549; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27370.1p  transcript_id AT1G27370.1  protein_id AT1G27370.1p  transcript_id AT1G27370.1  
At1g27370	chr1:009506333	0.0	C/9506333-9506997,9506082-9506203,9505718-9505966,9505454-9505608	AT1G27370.2  CDS  gene_syn F17L21.15, F17L21_15  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product squamosa promoter-binding protein-like 10 (SPL10)  note squamosa promoter-binding protein-like 10 (SPL10); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-binding protein-like 11 (SPL11) (TAIR:AT1G27360.4); Has 557 Blast hits to 557 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 549; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27370.2p  transcript_id AT1G27370.2  protein_id AT1G27370.2p  transcript_id AT1G27370.2  
At1g27370	chr1:009506333	0.0	C/9506333-9506997,9506082-9506203,9505718-9505966,9505454-9505608	AT1G27370.3  CDS  gene_syn F17L21.15, F17L21_15  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product squamosa promoter-binding protein-like 10 (SPL10)  note squamosa promoter-binding protein-like 10 (SPL10); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-binding protein-like 11 (SPL11) (TAIR:AT1G27360.4); Has 557 Blast hits to 557 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 549; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27370.3p  transcript_id AT1G27370.3  protein_id AT1G27370.3p  transcript_id AT1G27370.3  
At1g27370	chr1:009506333	0.0	C/9506333-9506997,9506082-9506203,9505718-9505966,9505454-9505608	AT1G27370.4  CDS  gene_syn F17L21.15, F17L21_15  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product squamosa promoter-binding protein-like 10 (SPL10)  note squamosa promoter-binding protein-like 10 (SPL10); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-binding protein-like 11 (SPL11) (TAIR:AT1G27360.4); Has 557 Blast hits to 557 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 549; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27370.4p  transcript_id AT1G27370.4  protein_id AT1G27370.4p  transcript_id AT1G27370.4  
At1g27380	chr1:009509797	0.0	C/9509797-9509827,9509538-9509675,9508903-9509069	AT1G27380.1  CDS  gene_syn F17L21.16, F17L21_16, RIC2, ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2  gene RIC2  function encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC4 (family subgroup V). Gene is expressed in all tissues examined.  go_component plasma membrane|GO:0005886|11752391|IDA  go_process pollen tube growth|GO:0009860|11752391|IMP  go_function molecular_function|GO:0003674||ND  product RIC2 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2)  note ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2 (RIC2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen tube growth; LOCATED IN: plasma membrane; EXPRESSED IN: inflorescence meristem, hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095); Has 59 Blast hits to 59 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27380.1p  transcript_id AT1G27380.1  protein_id AT1G27380.1p  transcript_id AT1G27380.1  
At1g27380	chr1:009509797	0.0	C/9509797-9509827,9509538-9509675,9508903-9509069	AT1G27380.2  CDS  gene_syn F17L21.16, F17L21_16, RIC2, ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2  gene RIC2  function encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC4 (family subgroup V). Gene is expressed in all tissues examined.  go_component plasma membrane|GO:0005886|11752391|IDA  go_process pollen tube growth|GO:0009860|11752391|IMP  go_function molecular_function|GO:0003674||ND  product RIC2 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2)  note ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2 (RIC2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen tube growth; LOCATED IN: plasma membrane; EXPRESSED IN: inflorescence meristem, hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095); Has 59 Blast hits to 59 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27380.2p  transcript_id AT1G27380.2  protein_id AT1G27380.2p  transcript_id AT1G27380.2  
At1g27385	chr1:009512571	0.0	C/9512571-9512820,9512116-9512216,9511818-9511931,9511361-9511444,9511129-9511185	AT1G27385.2  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF493 (InterPro:IPR007454); Has 46 Blast hits to 46 proteins in 13 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G27385.2p  transcript_id AT1G27385.2  protein_id AT1G27385.2p  transcript_id AT1G27385.2  
At1g27385	chr1:009512571	0.0	C/9512571-9512820,9512116-9512216,9511818-9511931,9511361-9511444,9511133-9511185,9510827-9510901,9510603-9510638,9510475-9510526	AT1G27385.4  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF493 (InterPro:IPR007454).  protein_id AT1G27385.4p  transcript_id AT1G27385.4  protein_id AT1G27385.4p  transcript_id AT1G27385.4  
At1g27385	chr1:009512571	0.0	C/9512571-9512820,9512116-9512219,9511818-9511931,9511361-9511444,9511129-9511185	AT1G27385.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF493 (InterPro:IPR007454); Has 46 Blast hits to 46 proteins in 13 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G27385.1p  transcript_id AT1G27385.1  protein_id AT1G27385.1p  transcript_id AT1G27385.1  
At1g27385	chr1:009512571	0.0	C/9512571-9512820,9512116-9512219,9511818-9511931,9511361-9511444,9511133-9511185,9510603-9510638,9510475-9510526	AT1G27385.3  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF493 (InterPro:IPR007454).  protein_id AT1G27385.3p  transcript_id AT1G27385.3  protein_id AT1G27385.3p  transcript_id AT1G27385.3  
At1g27390	chr1:009514814	0.0	C/9514814-9514912,9514446-9514524,9514190-9514359,9514051-9514098,9513772-9513876,9513469-9513600	AT1G27390.1  CDS  gene_syn F17L21.18, F17L21_18, TOM20-2, TRANSLOCASE OUTER MEMBRANE 20-2  gene TOM20-2  function Form of TOM20, which is a component of the TOM complex, involved in transport of nuclear-encoded mitochondrial proteins  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_function metal ion binding|GO:0046872|12606038|IDA  go_component mitochondrion|GO:0005739|11743114|IDA  go_component mitochondrion|GO:0005739|12606038|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|14730085|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component mitochondrial outer membrane|GO:0005741|14730085|IDA  go_component mitochondrial outer membrane translocase complex|GO:0005742|11161051|IDA  go_component mitochondrial inner membrane|GO:0005743|14730085|IDA  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744|11161051|TAS  go_component plastid|GO:0009536|16618929|IDA  go_process protein targeting to mitochondrion|GO:0006626|11161051|TAS  go_process protein targeting to mitochondrion|GO:0006626|17981999|IMP  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450|11161051|TAS  product TOM20-2 (TRANSLOCASE OUTER MEMBRANE 20-2); P-P-bond-hydrolysis-driven protein transmembrane transporter/ metal ion binding  note TRANSLOCASE OUTER MEMBRANE 20-2 (TOM20-2); FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity, metal ion binding; INVOLVED IN: protein targeting to mitochondrion; LOCATED IN: in 7 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide region (InterPro:IPR013026), Plant specific mitochondrial import receptor subunit TOM20 (InterPro:IPR010547); BEST Arabidopsis thaliana protein match is: TOM20-3 (TRANSLOCASE OF OUTER MEMBRANE 20 KDA SUBUNIT 3); P-P-bond-hydrolysis-driven protein transmembrane transporter (TAIR:AT3G27080.1); Has 58 Blast hits to 54 proteins in 16 species: Archae - 0; Bacteria - 6; Metazoa - 1; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27390.1p  transcript_id AT1G27390.1  protein_id AT1G27390.1p  transcript_id AT1G27390.1  
At1g27400	chr1:009515230	0.0	W/9515230-9515232,9515329-9515365,9515484-9515524,9516004-9516234,9516319-9516421,9516512-9516579,9516678-9516725	AT1G27400.1  CDS  gene_syn F17L21.19, F17L21_19  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L17 (RPL17A)  note 60S ribosomal protein L17 (RPL17A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, ribosome, plasma membrane, chloroplast, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L22/L17 (InterPro:IPR001063), Ribosomal protein L22/L17, eukaryotic/archaeal (InterPro:IPR005721), Ribosomal protein L22/L17, conserved site (InterPro:IPR018260); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L17 (RPL17B) (TAIR:AT1G67430.1); Has 1647 Blast hits to 1647 proteins in 483 species: Archae - 235; Bacteria - 361; Metazoa - 438; Fungi - 108; Plants - 104; Viruses - 0; Other Eukaryotes - 401 (source: NCBI BLink).  protein_id AT1G27400.1p  transcript_id AT1G27400.1  protein_id AT1G27400.1p  transcript_id AT1G27400.1  
At1g27410	chr1:009517226	0.0	W/9517226-9517517,9517601-9517803,9517887-9517994,9518078-9518743	AT1G27410.1  CDS  gene_syn F17L21.20, F17L21_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DNA cross-link repair protein-related  note DNA cross-link repair protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA repair metallo-beta-lactamase (InterPro:IPR011084); BEST Arabidopsis thaliana protein match is: SNM1 (SENSITIVE TO NITROGEN MUSTARD 1) (TAIR:AT3G26680.3); Has 573 Blast hits to 570 proteins in 153 species: Archae - 6; Bacteria - 34; Metazoa - 246; Fungi - 133; Plants - 85; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT1G27410.1p  transcript_id AT1G27410.1  protein_id AT1G27410.1p  transcript_id AT1G27410.1  
At1g27420	chr1:009519108	0.0	W/9519108-9519544,9519845-9520068,9520141-9520520	AT1G27420.1  CDS  gene_syn F17L21.21, F17L21_21  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT1G67480.2); Has 6640 Blast hits to 3983 proteins in 202 species: Archae - 11; Bacteria - 296; Metazoa - 5159; Fungi - 2; Plants - 652; Viruses - 264; Other Eukaryotes - 256 (source: NCBI BLink).  protein_id AT1G27420.1p  transcript_id AT1G27420.1  protein_id AT1G27420.1p  transcript_id AT1G27420.1  
At1g27430	chr1:009526862	0.0	C/9526862-9526928,9526390-9526460,9525390-9526220,9525185-9525275,9524988-9525086,9524131-9524841,9521656-9523983,9521389-9521526,9521045-9521304	AT1G27430.1  CDS  gene_syn F17L21.22, F17L21_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product GYF domain-containing protein  note GYF domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, sperm cell, guard cell; CONTAINS InterPro DOMAIN/s: GYF (InterPro:IPR003169); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24300.1); Has 16210 Blast hits to 8637 proteins in 432 species: Archae - 0; Bacteria - 623; Metazoa - 6402; Fungi - 1406; Plants - 810; Viruses - 83; Other Eukaryotes - 6886 (source: NCBI BLink).  protein_id AT1G27430.1p  transcript_id AT1G27430.1  protein_id AT1G27430.1p  transcript_id AT1G27430.1  
At1g27435	chr1:009528668	0.0	C/9528668-9528814,9527956-9528054	AT1G27435.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 8 Blast hits to 8 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27435.1p  transcript_id AT1G27435.1  protein_id AT1G27435.1p  transcript_id AT1G27435.1  
At1g27440	chr1:009531120	0.0	C/9531120-9531213,9530520-9530908,9530025-9530266,9529265-9529778	AT1G27440.1  CDS  gene_syn ATGUT1, F17L21.23, F17L21_23, GUT2, IRX10  gene GUT2  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process secondary cell wall biogenesis|GO:0009834|18980662|IMP  go_process glucuronoxylan biosynthetic process|GO:0010417|18980662|IMP  go_function catalytic activity|GO:0003824||ISS  go_function glucuronoxylan glucuronosyltransferase activity|GO:0080116|18980662|IMP  product GUT2; catalytic/ glucuronoxylan glucuronosyltransferase  note GUT2; FUNCTIONS IN: glucuronoxylan glucuronosyltransferase activity, catalytic activity; INVOLVED IN: secondary cell wall biogenesis, glucuronoxylan biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: GUT1; catalytic/ glucuronoxylan glucuronosyltransferase (TAIR:AT5G61840.1); Has 898 Blast hits to 891 proteins in 95 species: Archae - 0; Bacteria - 12; Metazoa - 260; Fungi - 4; Plants - 510; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).  protein_id AT1G27440.1p  transcript_id AT1G27440.1  protein_id AT1G27440.1p  transcript_id AT1G27440.1  
At1g27450	chr1:009532042	0.0	W/9532042-9532201,9532401-9532502,9532593-9532703,9532871-9532963,9533365-9533514,9533599-9533657,9533751-9533807	AT1G27450.1  CDS  gene_syn ADENINE PHOSPHORIBOSYL TRANSFERASE 1, APT1, ARABIDOPSIS THALIANA ADENINE PHOSPHORIBOSYLTRANSFERASE 1, ATAPT1, F17L21.24, F17L21_24  gene APT1  function Adenosine phosphoribosyl transferase(E.C:2.4.2.7), involved in the one-step salvage of adenine to AMP.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytosol|GO:0005829|12010467|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process adenine salvage|GO:0006168|12010467|TAS  go_function adenine phosphoribosyltransferase activity|GO:0003999|12010467|IDA  go_function adenine phosphoribosyltransferase activity|GO:0003999|8696367|IMP  go_function adenine phosphoribosyltransferase activity|GO:0003999||ISS  product APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1); adenine phosphoribosyltransferase  note ADENINE PHOSPHORIBOSYL TRANSFERASE 1 (APT1); FUNCTIONS IN: adenine phosphoribosyltransferase activity; INVOLVED IN: response to cadmium ion, adenine salvage; LOCATED IN: cytosol, chloroplast, plasma membrane, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adenine phosphoribosyl transferase (InterPro:IPR005764), Phosphoribosyltransferase (InterPro:IPR000836); BEST Arabidopsis thaliana protein match is: APT3 (ADENINE PHOSPHORIBOSYL TRANSFERASE 3); adenine phosphoribosyltransferase (TAIR:AT4G22570.1); Has 6360 Blast hits to 6360 proteins in 1411 species: Archae - 141; Bacteria - 3747; Metazoa - 151; Fungi - 126; Plants - 101; Viruses - 0; Other Eukaryotes - 2094 (source: NCBI BLink).  protein_id AT1G27450.1p  transcript_id AT1G27450.1  protein_id AT1G27450.1p  transcript_id AT1G27450.1  
At1g27450	chr1:009532421	0.0	W/9532421-9532502,9532593-9532703,9532871-9532963,9533365-9533514,9533599-9533657,9533751-9533807	AT1G27450.2  CDS  gene_syn ADENINE PHOSPHORIBOSYL TRANSFERASE 1, APT1, ARABIDOPSIS THALIANA ADENINE PHOSPHORIBOSYLTRANSFERASE 1, ATAPT1, F17L21.24, F17L21_24  gene APT1  function Adenosine phosphoribosyl transferase(E.C:2.4.2.7), involved in the one-step salvage of adenine to AMP.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytosol|GO:0005829|12010467|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process adenine salvage|GO:0006168|12010467|TAS  go_function adenine phosphoribosyltransferase activity|GO:0003999|12010467|IDA  go_function adenine phosphoribosyltransferase activity|GO:0003999|8696367|IMP  go_function adenine phosphoribosyltransferase activity|GO:0003999||ISS  product APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1); adenine phosphoribosyltransferase  note ADENINE PHOSPHORIBOSYL TRANSFERASE 1 (APT1); FUNCTIONS IN: adenine phosphoribosyltransferase activity; INVOLVED IN: response to cadmium ion, adenine salvage; LOCATED IN: cytosol, chloroplast, plasma membrane, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adenine phosphoribosyl transferase (InterPro:IPR005764), Phosphoribosyltransferase (InterPro:IPR000836); BEST Arabidopsis thaliana protein match is: APT3 (ADENINE PHOSPHORIBOSYL TRANSFERASE 3); adenine phosphoribosyltransferase (TAIR:AT4G22570.1); Has 6350 Blast hits to 6350 proteins in 1411 species: Archae - 141; Bacteria - 3739; Metazoa - 151; Fungi - 126; Plants - 101; Viruses - 0; Other Eukaryotes - 2092 (source: NCBI BLink).  protein_id AT1G27450.2p  transcript_id AT1G27450.2  protein_id AT1G27450.2p  transcript_id AT1G27450.2  
At1g27460	chr1:009534977	0.0	W/9534977-9535174,9535268-9535526,9535622-9536793,9536862-9537006,9537114-9537424	AT1G27460.1  CDS  gene_syn F17L21.25, F17L21_25, NO POLLEN GERMINATION RELATED 1, NPGR1  gene NPGR1  function encodes a calmodulin-binding protein that is expressed in pollen, suspension culture cells, flowers, and fruits.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function calmodulin binding|GO:0005516|12928497|TAS  product NPGR1 (NO POLLEN GERMINATION RELATED 1); calmodulin binding  note NO POLLEN GERMINATION RELATED 1 (NPGR1); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: NPG1 (no pollen germination 1); calmodulin binding (TAIR:AT2G43040.1); Has 1592 Blast hits to 1321 proteins in 206 species: Archae - 144; Bacteria - 431; Metazoa - 461; Fungi - 20; Plants - 84; Viruses - 0; Other Eukaryotes - 452 (source: NCBI BLink).  protein_id AT1G27460.1p  transcript_id AT1G27460.1  protein_id AT1G27460.1p  transcript_id AT1G27460.1  
At1g27461	chr1:009537948	0.0	C/9537948-9539012	AT1G27461.1  CDS  product unknown protein  note unknown protein; Has 19 Blast hits to 19 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G27461.1p  transcript_id AT1G27461.1  protein_id AT1G27461.1p  transcript_id AT1G27461.1  
At1g27470	chr1:009544060	0.0	C/9544060-9544218,9543814-9543957,9543418-9543709,9543269-9543332,9543003-9543116,9542767-9542929,9542379-9542526,9541455-9542032,9541190-9541371,9540777-9541037,9540368-9540695	AT1G27470.1  CDS  gene_syn F17L21.26, F17L21_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin-related / WD-40 repeat protein-related  note transducin-related / WD-40 repeat protein-related; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), WD40 repeat, region (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT4G07410.1); Has 6753 Blast hits to 4580 proteins in 346 species: Archae - 8; Bacteria - 2018; Metazoa - 1907; Fungi - 1463; Plants - 459; Viruses - 0; Other Eukaryotes - 898 (source: NCBI BLink).  protein_id AT1G27470.1p  transcript_id AT1G27470.1  protein_id AT1G27470.1p  transcript_id AT1G27470.1  
At1g27480	chr1:009544607	0.0	W/9544607-9545007,9545271-9546168	AT1G27480.1  CDS  gene_syn F17L21.27, F17L21_27  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function phosphatidylcholine-sterol O-acyltransferase activity|GO:0004607||IEA  go_process lipid metabolic process|GO:0006629||ISS  go_function phosphatidylcholine-sterol O-acyltransferase activity|GO:0004607||ISS  product lecithin:cholesterol acyltransferase family protein / LACT family protein  note lecithin:cholesterol acyltransferase family protein / LACT family protein; FUNCTIONS IN: phosphatidylcholine-sterol O-acyltransferase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lecithin:cholesterol acyltransferase (InterPro:IPR003386); Has 852 Blast hits to 847 proteins in 171 species: Archae - 0; Bacteria - 22; Metazoa - 582; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).  protein_id AT1G27480.1p  transcript_id AT1G27480.1  protein_id AT1G27480.1p  transcript_id AT1G27480.1  
At1g27490	chr1:009546974	0.0	C/9546974-9547073,9546710-9546890,9546373-9546586	AT1G27490.1  CDS  gene_syn F17L21.28, F17L21_28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated (InterPro:IPR006527); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G23260.1); Has 41 Blast hits to 37 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27490.1p  transcript_id AT1G27490.1  protein_id AT1G27490.1p  transcript_id AT1G27490.1  
At1g27500	chr1:009551904	0.0	C/9551904-9553654,9551629-9551830	AT1G27500.1  CDS  gene_syn F17L21.29, F17L21_29  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  product kinesin light chain-related  note kinesin light chain-related; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: kinesin light chain-related (TAIR:AT3G27960.1); Has 9593 Blast hits to 4041 proteins in 387 species: Archae - 146; Bacteria - 2714; Metazoa - 5077; Fungi - 488; Plants - 183; Viruses - 0; Other Eukaryotes - 985 (source: NCBI BLink).  protein_id AT1G27500.1p  transcript_id AT1G27500.1  protein_id AT1G27500.1p  transcript_id AT1G27500.1  
At1g27510	chr1:009557964	0.0	C/9557964-9558293,9557747-9557863,9557603-9557668,9557189-9557295,9557028-9557109,9556157-9556846,9555891-9556017,9555623-9555789,9555461-9555535,9555125-9555217,9554945-9555046	AT1G27510.1  CDS  go_component thylakoid membrane|GO:0042651|17540731|IDA  go_process response to singlet oxygen|GO:0000304|17540731|IGI  product unknown protein  note INVOLVED IN: response to singlet oxygen; LOCATED IN: thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: EX1 (EXECUTER1) (TAIR:AT4G33630.2); Has 213 Blast hits to 208 proteins in 76 species: Archae - 0; Bacteria - 13; Metazoa - 63; Fungi - 31; Plants - 69; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT1G27510.1p  transcript_id AT1G27510.1  protein_id AT1G27510.1p  transcript_id AT1G27510.1  
At1g27520	chr1:009558752	0.0	W/9558752-9558882,9558970-9559012,9559086-9559151,9559230-9559291,9559368-9559467,9559594-9559776,9560018-9560066,9560154-9560333,9560477-9560597,9560707-9560788,9560880-9560965,9561075-9561175,9561298-9561439,9561525-9561675,9561864-9562091	AT1G27520.1  CDS  gene_syn T17H3.2, T17H3_2  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_function mannosyl-oligosaccharide 1,2-alpha-mannosidase activity|GO:0004571||IEA  go_function calcium ion binding|GO:0005509||IEA  go_process protein amino acid N-linked glycosylation|GO:0006487||ISS  go_function alpha-mannosidase activity|GO:0004559||ISS  product glycoside hydrolase family 47 protein  note glycoside hydrolase family 47 protein; FUNCTIONS IN: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, alpha-mannosidase activity, calcium ion binding; INVOLVED IN: protein amino acid N-linked glycosylation; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 47 (InterPro:IPR001382); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 47 protein (TAIR:AT5G43710.1); Has 1556 Blast hits to 1349 proteins in 142 species: Archae - 0; Bacteria - 8; Metazoa - 690; Fungi - 626; Plants - 92; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink).  protein_id AT1G27520.1p  transcript_id AT1G27520.1  protein_id AT1G27520.1p  transcript_id AT1G27520.1  
At1g27530	chr1:009563555	0.0	C/9563555-9563887,9563409-9563470,9562761-9562890	AT1G27530.1  CDS  gene_syn T17H3.3, T17H3_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-fold modifier-conjugating enzyme 1 (InterPro:IPR014806); Has 183 Blast hits to 183 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT1G27530.1p  transcript_id AT1G27530.1  protein_id AT1G27530.1p  transcript_id AT1G27530.1  
At1g27540	chr1:009566608	0.0	C/9566608-9567849	AT1G27540.1  CDS  gene_syn T17H3.4, T17H3_4  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G27580.1); Has 148 Blast hits to 145 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27540.1p  transcript_id AT1G27540.1  protein_id AT1G27540.1p  transcript_id AT1G27540.1  
At1g27540	chr1:009567824	0.0	C/9567824-9567849,9566608-9567733	AT1G27540.2  CDS  gene_syn T17H3.4, T17H3_4  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G27580.1); Has 149 Blast hits to 146 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27540.2p  transcript_id AT1G27540.2  protein_id AT1G27540.2p  transcript_id AT1G27540.2  
At1g27550	chr1:009569186	0.0	C/9569186-9569330,9568813-9569045	AT1G27550.1  CDS  gene_syn T17H3.5, T17H3_5  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G27580.1); Has 60 Blast hits to 60 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27550.1p  transcript_id AT1G27550.1  protein_id AT1G27550.1p  transcript_id AT1G27550.1  
At1g27560	chr1:009570855	0.0	C/9570855-9571987	AT1G27560.1  pseudogenic_transcript  pseudo  gene_syn T17H3.6, T17H3_6  function pseudogene of F-box family protein-related  
At1g27565	chr1:009574710	0.0	W/9574710-9574740,9574866-9574978	AT1G27565.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52905.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27565.1p  transcript_id AT1G27565.1  protein_id AT1G27565.1p  transcript_id AT1G27565.1  
At1g27570	chr1:009575538	0.0	W/9575538-9575752,9576162-9576178,9576260-9576354,9576707-9576805,9577051-9577346,9580382-9580490,9580878-9581006,9581414-9582376	AT1G27570.2  CDS  gene_syn T17H3.7, T17H3_7  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function inositol or phosphatidylinositol kinase activity|GO:0004428||ISS  product phosphatidylinositol 3- and 4-kinase family protein  note phosphatidylinositol 3- and 4-kinase family protein; FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3- and 4-kinase, catalytic (InterPro:IPR000403); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27590.1).  protein_id AT1G27570.2p  transcript_id AT1G27570.2  protein_id AT1G27570.2p  transcript_id AT1G27570.2  
At1g27570	chr1:009575538	0.0	W/9575538-9575752,9576162-9576321,9576707-9576805,9576944-9577055,9577184-9577346,9580382-9580490,9580878-9581006,9581414-9582376	AT1G27570.1  CDS  gene_syn T17H3.7, T17H3_7  go_function binding|GO:0005488||IEA  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function inositol or phosphatidylinositol kinase activity|GO:0004428||ISS  product phosphatidylinositol 3- and 4-kinase family protein  note phosphatidylinositol 3- and 4-kinase family protein; FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, binding, phosphotransferase activity, alcohol group as acceptor; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3- and 4-kinase, catalytic (InterPro:IPR000403), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27590.1); Has 229 Blast hits to 229 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 55; Fungi - 2; Plants - 143; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G27570.1p  transcript_id AT1G27570.1  protein_id AT1G27570.1p  transcript_id AT1G27570.1  
At1g27580	chr1:009590871	0.0	C/9590871-9591075,9589933-9590822	AT1G27580.1  CDS  gene_syn T22C5.1  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G27540.2); Has 124 Blast hits to 124 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27580.1p  transcript_id AT1G27580.1  protein_id AT1G27580.1p  transcript_id AT1G27580.1  
At1g27590	chr1:009592293	0.0	W/9592293-9592507,9592719-9592878,9593225-9593317,9593458-9593560,9593689-9593912	AT1G27590.1  CDS  gene_syn T22C5.2  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: phosphatidylinositol 3- and 4-kinase family protein (TAIR:AT1G27570.1); Has 81 Blast hits to 81 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 59; Fungi - 4; Plants - 17; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G27590.1p  transcript_id AT1G27590.1  protein_id AT1G27590.1p  transcript_id AT1G27590.1  
At1g27595	chr1:009596475	0.0	W/9596475-9596981,9597057-9597704,9597863-9597931,9598188-9598298,9598367-9598609,9598892-9598939,9599028-9599165,9599394-9599549,9599638-9599700,9599935-9600045,9600135-9600218,9600318-9600365,9600640-9600714,9600924-9601019,9601747-9601827,9601901-9601972,9602312-9602356,9602456-9602539,9602622-9602725,9602815-9602917	AT1G27595.1  CDS  gene_syn T22C5.3  product unknown protein  note EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: ESP4 (ENHANCED SILENCING PHENOTYPE 4); binding (TAIR:AT5G01400.1); Has 529 Blast hits to 235 proteins in 85 species: Archae - 0; Bacteria - 3; Metazoa - 125; Fungi - 41; Plants - 31; Viruses - 0; Other Eukaryotes - 329 (source: NCBI BLink).  protein_id AT1G27595.1p  transcript_id AT1G27595.1  protein_id AT1G27595.1p  transcript_id AT1G27595.1  
At1g27600	chr1:009605118	0.0	C/9605118-9605881,9604344-9604593,9604083-9604253	AT1G27600.1  CDS  gene_syn T22C5.4  go_component membrane|GO:0016020||IEA  go_process protein amino acid glycosylation|GO:0006486||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyl transferase family 43 protein  note glycosyl transferase family 43 protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 43 (InterPro:IPR005027); BEST Arabidopsis thaliana protein match is: IRX9 (IRREGULAR XYLEM 9); transferase, transferring glycosyl groups / xylosyltransferase (TAIR:AT2G37090.1); Has 547 Blast hits to 546 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 381; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G27600.1p  transcript_id AT1G27600.1  protein_id AT1G27600.1p  transcript_id AT1G27600.1  
At1g27600	chr1:009605118	0.0	C/9605118-9605881,9604344-9604593,9604083-9604253	AT1G27600.2  CDS  gene_syn T22C5.4  go_component membrane|GO:0016020||IEA  go_process protein amino acid glycosylation|GO:0006486||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyl transferase family 43 protein  note glycosyl transferase family 43 protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 43 (InterPro:IPR005027); BEST Arabidopsis thaliana protein match is: IRX9 (IRREGULAR XYLEM 9); transferase, transferring glycosyl groups / xylosyltransferase (TAIR:AT2G37090.1); Has 547 Blast hits to 546 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 381; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G27600.2p  transcript_id AT1G27600.2  protein_id AT1G27600.2p  transcript_id AT1G27600.2  
At1g27610	chr1:009607428	0.0	C/9607428-9607577,9607111-9607305	AT1G27610.1  CDS  gene_syn T22C5.5  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage, D bilateral stage; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27610.1p  transcript_id AT1G27610.1  protein_id AT1G27610.1p  transcript_id AT1G27610.1  
At1g27620	chr1:009608444	0.0	W/9608444-9608863,9609524-9610432	AT1G27620.1  CDS  gene_syn T22C5.6  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT2G40230.1); Has 1303 Blast hits to 1293 proteins in 113 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 44; Plants - 1257; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27620.1p  transcript_id AT1G27620.1  protein_id AT1G27620.1p  transcript_id AT1G27620.1  
At1g27630	chr1:009611647	0.0	W/9611647-9611876,9612590-9612671,9612926-9613060,9613142-9613314,9613392-9613537,9613780-9613967	AT1G27630.1  CDS  gene_syn CYCLIN T 1;3, CYCT1;3, T22C5.8  gene CYCT1;3  go_component nucleus|GO:0005634|15610358|IDA  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase activity|GO:0004693||ISS  product CYCT1;3 (CYCLIN T 1;3); cyclin-dependent protein kinase  note CYCLIN T 1;3 (CYCT1;3); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like (InterPro:IPR011028), Transcription regulator cyclin (InterPro:IPR015429), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: cyclin family protein (TAIR:AT5G45190.1); Has 1136 Blast hits to 1136 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 700; Fungi - 230; Plants - 139; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT1G27630.1p  transcript_id AT1G27630.1  protein_id AT1G27630.1p  transcript_id AT1G27630.1  
At1g27640	chr1:009614463	0.0	C/9614463-9614906	AT1G27640.1  CDS  gene_syn T22C5.9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27640.1p  transcript_id AT1G27640.1  protein_id AT1G27640.1p  transcript_id AT1G27640.1  
At1g27650	chr1:009615152	0.0	W/9615152-9616042	AT1G27650.1  CDS  gene_syn ATU2AF35A, T22C5.30  gene ATU2AF35A  function U2 auxiliary factor small subunit. The atU2AF35a protein and its homolog, atU2AF35b, contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83% identical, and each Arabidopsis homolog shows approximately 70% similarity to hsU2AF35. U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634|16407443|IDA  go_process photoperiodism, flowering|GO:0048573|16407443|IMP  go_function RNA binding|GO:0003723||ISS  product ATU2AF35A; RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding  note ATU2AF35A; FUNCTIONS IN: RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding; INVOLVED IN: photoperiodism, flowering; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), U2 auxiliary factor small subunit (InterPro:IPR009145); BEST Arabidopsis thaliana protein match is: U2AF35B; RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding (TAIR:AT5G42820.2); Has 4601 Blast hits to 3630 proteins in 230 species: Archae - 0; Bacteria - 65; Metazoa - 2980; Fungi - 543; Plants - 388; Viruses - 15; Other Eukaryotes - 610 (source: NCBI BLink).  protein_id AT1G27650.1p  transcript_id AT1G27650.1  protein_id AT1G27650.1p  transcript_id AT1G27650.1  
At1g27650	chr1:009615302	0.0	W/9615302-9616042	AT1G27650.2  CDS  gene_syn ATU2AF35A, T22C5.30  gene ATU2AF35A  function U2 auxiliary factor small subunit. The atU2AF35a protein and its homolog, atU2AF35b, contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83% identical, and each Arabidopsis homolog shows approximately 70% similarity to hsU2AF35. U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634|16407443|IDA  go_process photoperiodism, flowering|GO:0048573|16407443|IMP  go_function RNA binding|GO:0003723||ISS  product ATU2AF35A; RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding  note ATU2AF35A; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: photoperiodism, flowering; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, region 1 (InterPro:IPR003954), U2 auxiliary factor small subunit (InterPro:IPR009145); BEST Arabidopsis thaliana protein match is: U2AF35B; RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding (TAIR:AT5G42820.2); Has 4568 Blast hits to 3594 proteins in 227 species: Archae - 0; Bacteria - 65; Metazoa - 2976; Fungi - 533; Plants - 391; Viruses - 11; Other Eukaryotes - 592 (source: NCBI BLink).  protein_id AT1G27650.2p  transcript_id AT1G27650.2  protein_id AT1G27650.2p  transcript_id AT1G27650.2  
At1g27660	chr1:009621701	0.0	W/9621701-9621846,9622202-9622919,9623972-9624103,9624330-9624395,9624669-9624734,9625326-9625385,9625493-9625666	AT1G27660.1  CDS  gene_syn T22C5.11, T22C5_11  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|12679534|ISS  product ethylene-responsive protein -related  note ethylene-responsive protein -related; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT1G61660.1); Has 1339 Blast hits to 1082 proteins in 58 species: Archae - 0; Bacteria - 6; Metazoa - 253; Fungi - 24; Plants - 627; Viruses - 0; Other Eukaryotes - 429 (source: NCBI BLink).  protein_id AT1G27660.1p  transcript_id AT1G27660.1  protein_id AT1G27660.1p  transcript_id AT1G27660.1  
At1g27670	chr1:009627715	0.0	C/9627715-9628413	AT1G27670.1  CDS  gene_syn T22C5.12, T22C5_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; Has 17 Blast hits to 17 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27670.1p  transcript_id AT1G27670.1  protein_id AT1G27670.1p  transcript_id AT1G27670.1  
At1g27671	chr1:009629026	0.0	W/9629026-9630729	AT1G27671.1  pseudogenic_transcript  pseudo  function pseudogene of DRM2/DMT7 (domain rearranged methyltransferase protein)  
At1g27680	chr1:009631630	0.0	W/9631630-9631842,9632298-9632411,9632488-9632661,9632745-9632837,9632914-9632997,9633069-9633124,9633202-9633295,9633378-9633563,9633659-9633739,9633828-9633914,9634001-9634273,9634349-9634450	AT1G27680.1  CDS  gene_syn ADPGLC-PPASE LARGE SUBUNIT, APL2, T22C5.13, T22C5_13  gene APL2  function ADP-glucose pyrophosphorylase catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms of the large subunit (ApL1-4) have been described.Mutational analysis of APS1 suggests that APL1 and APL2 can compensate for loss of APS1 catalytic activity,suggesting both have catalytic as well as regulatory functions.  go_component cellular_component|GO:0005575||ND  go_process starch biosynthetic process|GO:0019252|9841881|TAS  go_function glucose-1-phosphate adenylyltransferase activity|GO:0008878|12748181|IDA  go_function glucose-1-phosphate adenylyltransferase activity|GO:0008878|18614708|IDA  go_function glucose-1-phosphate adenylyltransferase activity|GO:0008878|8292792|ISS  product APL2 (ADPGLC-PPASE LARGE SUBUNIT); glucose-1-phosphate adenylyltransferase  note ADPGLC-PPASE LARGE SUBUNIT (APL2); FUNCTIONS IN: glucose-1-phosphate adenylyltransferase activity; INVOLVED IN: starch biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-1-phosphate adenylyltransferase (InterPro:IPR011831), ADP-glucose pyrophosphorylase, conserved site (InterPro:IPR005836), Bacterial transferase hexapeptide repeat (InterPro:IPR001451), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: APL3; glucose-1-phosphate adenylyltransferase (TAIR:AT4G39210.1); Has 7485 Blast hits to 7434 proteins in 1223 species: Archae - 309; Bacteria - 4339; Metazoa - 60; Fungi - 22; Plants - 1370; Viruses - 0; Other Eukaryotes - 1385 (source: NCBI BLink).  protein_id AT1G27680.1p  transcript_id AT1G27680.1  protein_id AT1G27680.1p  transcript_id AT1G27680.1  
At1g27690	chr1:009636681	0.0	W/9636681-9637082,9637325-9637675,9637759-9638307	AT1G27690.1  CDS  gene_syn T22C5.14, T22C5_14  go_process glycerol biosynthetic process|GO:0006114||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: glycerol biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF620 (InterPro:IPR006873); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19540.1); Has 114 Blast hits to 112 proteins in 14 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 110; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27690.1p  transcript_id AT1G27690.1  protein_id AT1G27690.1p  transcript_id AT1G27690.1  
At1g27695	chr1:009639214	0.0	W/9639214-9639253,9639329-9639373,9639701-9639733,9639845-9640002	AT1G27695.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 5231 Blast hits to 841 proteins in 144 species: Archae - 32; Bacteria - 309; Metazoa - 3238; Fungi - 61; Plants - 1195; Viruses - 55; Other Eukaryotes - 341 (source: NCBI BLink).  protein_id AT1G27695.1p  transcript_id AT1G27695.1  protein_id AT1G27695.1p  transcript_id AT1G27695.1  
At1g27695	chr1:009639214	0.0	W/9639214-9639253,9639329-9639373,9639701-9639733,9639845-9640002	AT1G27695.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 5231 Blast hits to 841 proteins in 144 species: Archae - 32; Bacteria - 309; Metazoa - 3238; Fungi - 61; Plants - 1195; Viruses - 55; Other Eukaryotes - 341 (source: NCBI BLink).  protein_id AT1G27695.2p  transcript_id AT1G27695.2  protein_id AT1G27695.2p  transcript_id AT1G27695.2  
At1g27700	chr1:009641676	0.0	C/9641676-9641752,9641365-9641479,9640800-9641288,9640519-9640705,9640394-9640419	AT1G27700.1  CDS  gene_syn T22C5.15, T22C5_15  go_component nucleus|GO:0005634|14617066|IDA  go_process vesicle-mediated transport|GO:0016192||IEA  go_process Golgi vesicle transport|GO:0048193||IEA  go_function protein binding|GO:0005515||IEA  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: Golgi vesicle transport, vesicle-mediated transport; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: t-SNARE (InterPro:IPR010989), Syntaxin 6, N-terminal (InterPro:IPR015260); BEST Arabidopsis thaliana protein match is: protein binding (TAIR:AT4G30240.1); Has 64 Blast hits to 63 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27700.1p  transcript_id AT1G27700.1  protein_id AT1G27700.1p  transcript_id AT1G27700.1  
At1g27710	chr1:009642550	0.0	W/9642550-9643042,9643061-9643188	AT1G27710.2  CDS  gene_syn T22C5.16, T22C5_16  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 111357 Blast hits to 28254 proteins in 1618 species: Archae - 161; Bacteria - 35687; Metazoa - 37412; Fungi - 6791; Plants - 10652; Viruses - 1325; Other Eukaryotes - 19329 (source: NCBI BLink).  protein_id AT1G27710.2p  transcript_id AT1G27710.2  protein_id AT1G27710.2p  transcript_id AT1G27710.2  
At1g27710	chr1:009642550	0.0	W/9642550-9643188	AT1G27710.1  CDS  gene_syn T22C5.16, T22C5_16  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 120548 Blast hits to 30075 proteins in 1672 species: Archae - 197; Bacteria - 36804; Metazoa - 40978; Fungi - 7705; Plants - 11642; Viruses - 1515; Other Eukaryotes - 21707 (source: NCBI BLink).  protein_id AT1G27710.1p  transcript_id AT1G27710.1  protein_id AT1G27710.1p  transcript_id AT1G27710.1  
At1g27720	chr1:009647335	0.0	C/9647335-9647376,9647149-9647215,9646646-9646878,9646454-9646555,9646141-9646201,9645304-9646010,9644953-9645077,9644713-9644800,9644489-9644627,9644341-9644396,9644198-9644254,9643996-9644118,9643856-9643906,9643612-9643771,9643351-9643502	AT1G27720.1  CDS  gene_syn T22C5.17, T22C5_17, TAF4, TAF4B, TBP-ASSOCIATED FACTOR 4, TBP-ASSOCIATED FACTOR 4B  gene TAF4B  go_component transcription factor TFIID complex|GO:0005669||IEA  go_process transcription initiation|GO:0006352||IEA  go_function transcription initiation factor activity|GO:0016986||IEA  go_function transcription initiation factor activity|GO:0016986||ISS  product TAF4B (TBP-ASSOCIATED FACTOR 4B); transcription initiation factor  note TBP-ASSOCIATED FACTOR 4B (TAF4B); FUNCTIONS IN: transcription initiation factor activity; INVOLVED IN: transcription initiation; LOCATED IN: transcription factor TFIID complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID component TAF4 (InterPro:IPR007900); BEST Arabidopsis thaliana protein match is: TAF4 (TBP-ASSOCIATED FACTOR 4); transcription initiation factor (TAIR:AT5G43130.1); Has 720 Blast hits to 645 proteins in 126 species: Archae - 0; Bacteria - 18; Metazoa - 222; Fungi - 115; Plants - 49; Viruses - 2; Other Eukaryotes - 314 (source: NCBI BLink).  protein_id AT1G27720.1p  transcript_id AT1G27720.1  protein_id AT1G27720.1p  transcript_id AT1G27720.1  
At1g27730	chr1:009648302	0.0	C/9648302-9648985	AT1G27730.1  CDS  gene_syn STZ, T22C5.18, T22C5_18, ZAT10, salt tolerance zinc finger  gene STZ  function Related to Cys2/His2-type zinc-finger proteins found in higher plants. Compensated for a subset of calcineurin deficiency in yeast. Salt tolerance produced by ZAT10 appeared to be partially dependent on ENA1/PMR2, a P-type ATPase required for Li+ and Na+ efflux in yeast. The protein is localized to the nucleus, acts as a transcriptional repressor and is responsive to chitin oligomers. Also involved in response to photooxidative stress.  go_component nucleus|GO:0005634|15333755|IDA  go_process response to oxidative stress|GO:0006979|18156220|IMP  go_process response to cold|GO:0009409|15333755|IEP  go_process response to water deprivation|GO:0009414|15333755|IEP  go_process response to water deprivation|GO:0009414|15333755|IMP  go_process response to wounding|GO:0009611|16258017|IEP  go_process response to high light intensity|GO:0009644|18156220|IEP  go_process response to salt stress|GO:0009651|15333755|IEP  go_process response to salt stress|GO:0009651|8662738|IEP  go_process response to salt stress|GO:0009651|8662738|IGI  go_process response to abscisic acid stimulus|GO:0009737|15333755|IEP  go_process photoprotection|GO:0010117|18156220|IMP  go_process response to chitin|GO:0010200|15923325|IEP  go_process photosynthesis|GO:0015979|18156220|IMP  go_process multicellular organism growth|GO:0035264|15333755|IMP  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|8662738|ISS  go_function zinc ion binding|GO:0008270||ISS  go_function transcription repressor activity|GO:0016564|15333755|IDA  product STZ (salt tolerance zinc finger); nucleic acid binding / transcription factor/ transcription repressor/ zinc ion binding  note salt tolerance zinc finger (STZ); FUNCTIONS IN: transcription repressor activity, transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: in 11 processes; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: ZAT6 (ZINC FINGER OF ARABIDOPSIS THALIANA 6); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT5G04340.1); Has 4189 Blast hits to 3065 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 3497; Fungi - 33; Plants - 520; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).  protein_id AT1G27730.1p  transcript_id AT1G27730.1  protein_id AT1G27730.1p  transcript_id AT1G27730.1  
At1g27740	chr1:009654753	0.0	W/9654753-9655106,9655198-9655392,9655481-9655612,9655711-9655806	AT1G27740.1  CDS  gene_syn T22C5.19, T22C5_19  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT5G43175.1); Has 1549 Blast hits to 1549 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 16; Plants - 1531; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G27740.1p  transcript_id AT1G27740.1  protein_id AT1G27740.1p  transcript_id AT1G27740.1  
At1g27750	chr1:009657425	0.0	W/9657425-9657731,9658043-9658761,9658974-9660016,9660215-9660390,9660481-9661129,9661235-9661316,9661402-9661449,9661547-9661750	AT1G27750.1  CDS  gene_syn T22C5.20, T22C5_20  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue C-terminal (InterPro:IPR012921), RNA recognition motif, RNP-1 (InterPro:IPR000504); BEST Arabidopsis thaliana protein match is: FPA; RNA binding (TAIR:AT2G43410.4); Has 43321 Blast hits to 25070 proteins in 1124 species: Archae - 78; Bacteria - 4579; Metazoa - 20319; Fungi - 5516; Plants - 6313; Viruses - 1307; Other Eukaryotes - 5209 (source: NCBI BLink).  protein_id AT1G27750.1p  transcript_id AT1G27750.1  protein_id AT1G27750.1p  transcript_id AT1G27750.1  
At1g27752	chr1:009662250	0.0	W/9662250-9662673,9662797-9662956,9663088-9663149,9663959-9664053,9664240-9664353,9664555-9664620,9665115-9665212,9665474-9665886,9666129-9667318	AT1G27752.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); Has 330 Blast hits to 312 proteins in 96 species: Archae - 0; Bacteria - 26; Metazoa - 143; Fungi - 77; Plants - 32; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT1G27752.1p  transcript_id AT1G27752.1  protein_id AT1G27752.1p  transcript_id AT1G27752.1  
At1g27752	chr1:009663144	0.0	W/9663144-9663149,9663970-9664053,9664240-9664353,9664555-9664620,9665115-9665212,9665474-9665886,9666129-9667318	AT1G27752.2  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); Has 307 Blast hits to 291 proteins in 93 species: Archae - 0; Bacteria - 26; Metazoa - 132; Fungi - 77; Plants - 29; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT1G27752.2p  transcript_id AT1G27752.2  protein_id AT1G27752.2p  transcript_id AT1G27752.2  
At1g27760	chr1:009668895	0.0	W/9668895-9668904,9669097-9669265,9669342-9669422,9669536-9669618,9669697-9669812,9669917-9670027,9670121-9670230,9670307-9670619,9670709-9670837,9670940-9671017,9671111-9671188,9671275-9671322	AT1G27760.3  CDS  gene_syn ATSAT32, SALT-TOLERANCE 32, SAT32, T22C5.22, T22C5_22  gene SAT32  function Encodes a protein with similarity to human interferon-related developmental regulator (IFRD)that is involved in salt tolerance. Loss of function mutations are hypersensitive to salt stress and have reduced fertility. SAT32 is found in the cytoplasm but appears to translocate to the nucleus when plants are subject to salt stress.  go_function binding|GO:0005488||IEA  go_component nucleus|GO:0005634|19210750|IDA  go_component cytoplasm|GO:0005737|19210750|IDA  go_process response to salt stress|GO:0009651|19210750|IMP  product interferon-related developmental regulator family protein / IFRD protein family  note SALT-TOLERANCE 32 (SAT32); FUNCTIONS IN: binding; INVOLVED IN: response to salt stress; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Interferon-related developmental regulator (InterPro:IPR007701), Interferon-related protein conserved region (InterPro:IPR006921), Armadillo-type fold (InterPro:IPR016024); Has 247 Blast hits to 247 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 154; Fungi - 37; Plants - 50; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G27760.3p  transcript_id AT1G27760.3  protein_id AT1G27760.3p  transcript_id AT1G27760.3  
At1g27760	chr1:009668895	0.0	W/9668895-9668904,9669097-9669265,9669354-9669422,9669536-9669618,9669697-9669812,9669917-9670027,9670121-9670230,9670307-9670619,9670709-9670837,9670940-9671017,9671111-9671188,9671275-9671322	AT1G27760.1  CDS  gene_syn ATSAT32, SALT-TOLERANCE 32, SAT32, T22C5.22, T22C5_22  gene SAT32  function Encodes a protein with similarity to human interferon-related developmental regulator (IFRD)that is involved in salt tolerance. Loss of function mutations are hypersensitive to salt stress and have reduced fertility. SAT32 is found in the cytoplasm but appears to translocate to the nucleus when plants are subject to salt stress.  go_function binding|GO:0005488||IEA  go_component nucleus|GO:0005634|19210750|IDA  go_component cytoplasm|GO:0005737|19210750|IDA  go_process response to salt stress|GO:0009651|19210750|IMP  product interferon-related developmental regulator family protein / IFRD protein family  note SALT-TOLERANCE 32 (SAT32); FUNCTIONS IN: binding; INVOLVED IN: response to salt stress; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Interferon-related developmental regulator (InterPro:IPR007701), Interferon-related protein conserved region (InterPro:IPR006921), Armadillo-type fold (InterPro:IPR016024); Has 247 Blast hits to 247 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 154; Fungi - 37; Plants - 50; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G27760.1p  transcript_id AT1G27760.1  protein_id AT1G27760.1p  transcript_id AT1G27760.1  
At1g27760	chr1:009669120	0.0	W/9669120-9669265,9669354-9669422,9669536-9669618,9669697-9669812,9669917-9670027,9670121-9670230,9670307-9670619,9670709-9670837,9670940-9671017,9671111-9671188,9671275-9671322	AT1G27760.2  CDS  gene_syn ATSAT32, SALT-TOLERANCE 32, SAT32, T22C5.22, T22C5_22  gene SAT32  function Encodes a protein with similarity to human interferon-related developmental regulator (IFRD)that is involved in salt tolerance. Loss of function mutations are hypersensitive to salt stress and have reduced fertility. SAT32 is found in the cytoplasm but appears to translocate to the nucleus when plants are subject to salt stress.  go_function binding|GO:0005488||IEA  go_component nucleus|GO:0005634|19210750|IDA  go_component cytoplasm|GO:0005737|19210750|IDA  go_process response to salt stress|GO:0009651|19210750|IMP  product interferon-related developmental regulator family protein / IFRD protein family  note SALT-TOLERANCE 32 (SAT32); FUNCTIONS IN: binding; INVOLVED IN: response to salt stress; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Interferon-related developmental regulator (InterPro:IPR007701), Interferon-related protein conserved region (InterPro:IPR006921), Armadillo-type fold (InterPro:IPR016024); Has 246 Blast hits to 246 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 37; Plants - 50; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G27760.2p  transcript_id AT1G27760.2  protein_id AT1G27760.2p  transcript_id AT1G27760.2  
At1g27770	chr1:009675834	0.0	C/9675834-9676010,9675309-9675363,9673281-9675232,9672948-9673106,9672656-9672827,9672250-9672548,9671912-9672160	AT1G27770.1  CDS  gene_syn ACA1, AUTO-INHIBITED CA2+-ATPASE 1, CA2+-ATPASE, PEA1, PLASTID ENVELOPE ATPASE 1, T22C5.23, T22C5_23  gene ACA1  function Encodes a chloroplast envelope Ca2+-ATPase with an N-terminal autoinhibitor.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process ATP biosynthetic process|GO:0006754||IEA  go_process cation transport|GO:0006812||IEA  go_process calcium ion transport|GO:0006816||IEA  go_process metabolic process|GO:0008152||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component chloroplast inner membrane|GO:0009706|8234257|IDA  go_component chloroplast inner membrane|GO:0009706|9009223|TAS  go_function calcium channel activity|GO:0005262|9009223|TAS  go_function calcium-transporting ATPase activity|GO:0005388|12805592|ISS  go_function calcium-transporting ATPase activity|GO:0005388|8234257|ISS  go_function calcium-transporting ATPase activity|GO:0005388|9009223|TAS  go_function calcium-transporting ATPase activity|GO:0005388||ISS  go_function calmodulin binding|GO:0005516|11782485|TAS  product ACA1 (AUTO-INHIBITED CA2+-ATPASE 1); calcium channel/ calcium-transporting ATPase/ calmodulin binding  note AUTO-INHIBITED CA2+-ATPASE 1 (ACA1); FUNCTIONS IN: calmodulin binding, calcium-transporting ATPase activity, calcium channel activity; INVOLVED IN: cation transport, calcium ion transport, metabolic process, ATP biosynthetic process; LOCATED IN: endoplasmic reticulum, plasma membrane, chloroplast inner membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, calcium-transporting, PMCA-type (InterPro:IPR006408), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: ACA2 (CALCIUM ATPASE 2); calcium ion transmembrane transporter/ calcium-transporting ATPase/ calmodulin binding (TAIR:AT4G37640.1); Has 26568 Blast hits to 19800 proteins in 1903 species: Archae - 546; Bacteria - 16430; Metazoa - 3450; Fungi - 1790; Plants - 1179; Viruses - 3; Other Eukaryotes - 3170 (source: NCBI BLink).  protein_id AT1G27770.1p  transcript_id AT1G27770.1  protein_id AT1G27770.1p  transcript_id AT1G27770.1  
At1g27770	chr1:009675834	0.0	C/9675834-9676010,9675309-9675363,9673562-9675232,9673281-9673339,9672948-9673106,9672656-9672827,9672250-9672548,9671912-9672160	AT1G27770.2  CDS  gene_syn ACA1, AUTO-INHIBITED CA2+-ATPASE 1, CA2+-ATPASE, PEA1, PLASTID ENVELOPE ATPASE 1, T22C5.23, T22C5_23  gene ACA1  function Encodes a chloroplast envelope Ca2+-ATPase with an N-terminal autoinhibitor.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process ATP biosynthetic process|GO:0006754||IEA  go_process cation transport|GO:0006812||IEA  go_process calcium ion transport|GO:0006816||IEA  go_process metabolic process|GO:0008152||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component chloroplast inner membrane|GO:0009706|8234257|IDA  go_component chloroplast inner membrane|GO:0009706|9009223|TAS  go_function calcium channel activity|GO:0005262|9009223|TAS  go_function calcium-transporting ATPase activity|GO:0005388|12805592|ISS  go_function calcium-transporting ATPase activity|GO:0005388|8234257|ISS  go_function calcium-transporting ATPase activity|GO:0005388|9009223|TAS  go_function calcium-transporting ATPase activity|GO:0005388||ISS  go_function calmodulin binding|GO:0005516|11782485|TAS  product ACA1 (AUTO-INHIBITED CA2+-ATPASE 1); calcium channel/ calcium-transporting ATPase/ calmodulin binding  note AUTO-INHIBITED CA2+-ATPASE 1 (ACA1); FUNCTIONS IN: calmodulin binding, calcium-transporting ATPase activity, calcium channel activity; INVOLVED IN: cation transport, calcium ion transport, metabolic process, ATP biosynthetic process; LOCATED IN: endoplasmic reticulum, plasma membrane, chloroplast inner membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, calcium-transporting, PMCA-type (InterPro:IPR006408), ATPase, P-type cation exchange, alpha subunit (InterPro:IPR006069), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068); BEST Arabidopsis thaliana protein match is: ACA2 (CALCIUM ATPASE 2); calcium ion transmembrane transporter/ calcium-transporting ATPase/ calmodulin binding (TAIR:AT4G37640.1); Has 27853 Blast hits to 19000 proteins in 1822 species: Archae - 516; Bacteria - 15210; Metazoa - 4784; Fungi - 2478; Plants - 1528; Viruses - 4; Other Eukaryotes - 3333 (source: NCBI BLink).  protein_id AT1G27770.2p  transcript_id AT1G27770.2  protein_id AT1G27770.2p  transcript_id AT1G27770.2  
At1g27780	chr1:009677043	0.0	W/9677043-9682982	AT1G27780.1  mRNA_TE_gene  pseudo  gene_syn T22C5.24, T22C5_24  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G05280.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G36860.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G34740.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653); contains InterPro domain Tetracyclin repressor-like, C-terminal; (InterPro:IPR011075)  
At1g27790	chr1:009683681	0.0	W/9683681-9684043	AT1G27790.1  mRNA_TE_gene  pseudo  gene_syn T22C5.25, T22C5_25  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G24380.1)  
At1g27800	chr1:009684838	0.0	W/9684838-9685473	AT1G27800.1  mRNA_TE_gene  pseudo  gene_syn T22C5.26, T22C5_26  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G24370.1); contains domain Hedgehog/intein (Hint) domain (SSF51294)  
At1g27810	chr1:009686068	0.0	C/9686068-9687016	AT1G27810.1  mRNA_TE_gene  pseudo  gene_syn T22C5.27, T22C5_27  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G34710.1); similar to Nucleic acid-binding, OB-fold [Medicago truncatula] (GB:ABD33040.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At1g27815	chr1:009687757	0.0	C/9687757-9690536	AT1G27815.1  mRNA_TE_gene  pseudo  gene_syn T22C5.31  note Transposable element gene, Mutator-like transposase family, has a 3.0e-77 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g27820	chr1:009691628	0.0	W/9691628-9692560	AT1G27820.1  CDS  gene_syn T22C5.28, T22C5_28  go_component nucleus|GO:0005634||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process RNA modification|GO:0009451||ISS  go_function ribonuclease activity|GO:0004540||ISS  product CCR4-NOT transcription complex protein, putative  note CCR4-NOT transcription complex protein, putative; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: CCR4-NOT transcription complex protein, putative (TAIR:AT1G27890.1); Has 612 Blast hits to 611 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 215; Fungi - 93; Plants - 208; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT1G27820.1p  transcript_id AT1G27820.1  protein_id AT1G27820.1p  transcript_id AT1G27820.1  
At1g27840	chr1:009696108	0.0	C/9696108-9696257,9695721-9695981,9695482-9695641,9695131-9695312,9694636-9694873,9693839-9693996,9693665-9693754,9693484-9693555,9693332-9693376	AT1G27840.3  CDS  gene_syn ATCSA-1, F28L5.15, F28L5_15  gene ATCSA-1  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note ATCSA-1; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT1G19750.1); Has 20142 Blast hits to 11900 proteins in 449 species: Archae - 22; Bacteria - 3120; Metazoa - 8347; Fungi - 4311; Plants - 1805; Viruses - 0; Other Eukaryotes - 2537 (source: NCBI BLink).  protein_id AT1G27840.3p  transcript_id AT1G27840.3  protein_id AT1G27840.3p  transcript_id AT1G27840.3  
At1g27840	chr1:009696108	0.0	C/9696108-9696257,9695721-9695981,9695482-9695641,9695131-9695312,9694636-9694873,9693842-9693996,9693665-9693754,9693484-9693555,9693332-9693376	AT1G27840.1  CDS  gene_syn ATCSA-1, F28L5.15, F28L5_15  gene ATCSA-1  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note ATCSA-1; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT1G19750.1); Has 21032 Blast hits to 12158 proteins in 463 species: Archae - 20; Bacteria - 3314; Metazoa - 8659; Fungi - 4484; Plants - 1886; Viruses - 0; Other Eukaryotes - 2669 (source: NCBI BLink).  protein_id AT1G27840.1p  transcript_id AT1G27840.1  protein_id AT1G27840.1p  transcript_id AT1G27840.1  
At1g27840	chr1:009696108	0.0	C/9696108-9696257,9695892-9695981,9695482-9695641,9695131-9695312,9694636-9694873,9693842-9693996,9693665-9693754,9693484-9693555,9693332-9693376	AT1G27840.2  CDS  gene_syn ATCSA-1, F28L5.15, F28L5_15  gene ATCSA-1  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note ATCSA-1; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT1G19750.1); Has 14855 Blast hits to 9266 proteins in 415 species: Archae - 20; Bacteria - 2927; Metazoa - 5817; Fungi - 3166; Plants - 1114; Viruses - 0; Other Eukaryotes - 1811 (source: NCBI BLink).  protein_id AT1G27840.2p  transcript_id AT1G27840.2  protein_id AT1G27840.2p  transcript_id AT1G27840.2  
At1g27850	chr1:009699265	0.0	W/9699265-9699460,9699595-9699691,9699976-9700093,9700193-9700924,9701279-9703133,9703253-9703701	AT1G27850.1  CDS  gene_syn F28L5.11, F28L5_11  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40070.1); Has 8415 Blast hits to 4570 proteins in 368 species: Archae - 6; Bacteria - 562; Metazoa - 3384; Fungi - 1377; Plants - 412; Viruses - 128; Other Eukaryotes - 2546 (source: NCBI BLink).  protein_id AT1G27850.1p  transcript_id AT1G27850.1  protein_id AT1G27850.1p  transcript_id AT1G27850.1  
At1g27860	chr1:009706152	0.0	C/9706152-9706238,9705718-9705813,9705378-9705570,9705152-9705234,9704981-9705065,9704558-9704883	AT1G27860.1  CDS  gene_syn F28L5.13, F28L5_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28500.1); Has 73 Blast hits to 72 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27860.1p  transcript_id AT1G27860.1  protein_id AT1G27860.1p  transcript_id AT1G27860.1  
At1g27870	chr1:009706657	0.0	C/9706657-9707298	AT1G27870.1  CDS  gene_syn F28L5.12, F28L5_12  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT2G33160.1); Has 220 Blast hits to 220 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 216; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G27870.1p  transcript_id AT1G27870.1  protein_id AT1G27870.1p  transcript_id AT1G27870.1  
At1g27880	chr1:009708940	0.0	W/9708940-9709965,9710061-9710114,9710261-9710373,9710478-9710693,9710770-9710848,9710966-9711019,9711101-9711175,9711293-9711346,9711444-9711488,9711575-9711669,9711755-9711884,9712026-9712124,9712244-9712299,9712397-9712499,9712947-9713075,9713161-9713330,9713484-9713508,9713601-9713716,9713805-9713901	AT1G27880.1  CDS  gene_syn F28L5.4, F28L5_4  go_process DNA recombination|GO:0006310||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_component cellular_component|GO:0005575||ND  go_function ATP binding|GO:0005524||ISS  go_function ATP-dependent helicase activity|GO:0008026||ISS  product ATP-dependent DNA helicase, putative  note ATP-dependent DNA helicase, putative; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: DNA recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DNA helicase, ATP-dependent, RecQ type, N-terminal region (InterPro:IPR018329), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RecQl3; ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding (TAIR:AT4G35740.1); Has 27945 Blast hits to 25738 proteins in 1743 species: Archae - 467; Bacteria - 11299; Metazoa - 4755; Fungi - 3174; Plants - 2751; Viruses - 586; Other Eukaryotes - 4913 (source: NCBI BLink).  protein_id AT1G27880.1p  transcript_id AT1G27880.1  protein_id AT1G27880.1p  transcript_id AT1G27880.1  
At1g27890	chr1:009714136	0.0	C/9714136-9715044	AT1G27890.1  CDS  gene_syn F28L5.5  go_component nucleus|GO:0005634||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process RNA modification|GO:0009451||ISS  go_function ribonuclease activity|GO:0004540||ISS  product CCR4-NOT transcription complex protein, putative  note CCR4-NOT transcription complex protein, putative; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: CCR4-NOT transcription complex protein, putative (TAIR:AT1G27820.1); Has 609 Blast hits to 608 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 215; Fungi - 91; Plants - 207; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT1G27890.1p  transcript_id AT1G27890.1  protein_id AT1G27890.1p  transcript_id AT1G27890.1  
At1g27900	chr1:009720147	0.0	C/9720147-9720346,9719949-9720041,9719752-9719856,9719456-9719673,9719282-9719334,9719073-9719189,9718861-9718952,9718221-9718307,9717696-9717910,9717428-9717520,9717221-9717344,9716957-9717107,9716538-9716607,9716179-9716339,9715871-9716046,9715615-9715762	AT1G27900.1  CDS  gene_syn F13K9.28, F13K9_28  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ATP-dependent RNA helicase activity|GO:0004004||ISS  product RNA helicase, putative  note RNA helicase, putative; FUNCTIONS IN: in 7 functions; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated region (InterPro:IPR007502), ATPase, AAA+ type, core (InterPro:IPR003593), Region of unknown function DUF1605 (InterPro:IPR011709), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP-dependent RNA helicase, putative (TAIR:AT3G26560.1); Has 7578 Blast hits to 6938 proteins in 1088 species: Archae - 21; Bacteria - 1966; Metazoa - 2049; Fungi - 827; Plants - 376; Viruses - 892; Other Eukaryotes - 1447 (source: NCBI BLink).  protein_id AT1G27900.1p  transcript_id AT1G27900.1  protein_id AT1G27900.1p  transcript_id AT1G27900.1  
At1g27910	chr1:009723925	0.0	C/9723925-9723975,9723478-9723663,9723277-9723384,9721982-9723138,9720962-9721766	AT1G27910.1  CDS  gene_syn ARABIDOPSIS THALIANA PLANT U-BOX 45, ATPUB45, F13K9.2, F13K9_2, PLANT U-BOX 45, PUB45  gene PUB45  function Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein ubiquitination|GO:0016567|14657406|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|14657406|IDA  product PUB45 (PLANT U-BOX 45); ubiquitin-protein ligase  note PLANT U-BOX 45 (PUB45); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein / U-box domain-containing family protein (TAIR:AT1G24330.1); Has 1566 Blast hits to 1534 proteins in 151 species: Archae - 0; Bacteria - 17; Metazoa - 172; Fungi - 102; Plants - 1098; Viruses - 3; Other Eukaryotes - 174 (source: NCBI BLink).  protein_id AT1G27910.1p  transcript_id AT1G27910.1  protein_id AT1G27910.1p  transcript_id AT1G27910.1  
At1g27920	chr1:009726948	0.0	W/9726948-9726982,9727068-9727206,9727293-9727496,9727616-9727873,9727995-9728207,9728365-9728520,9728615-9728771,9728860-9729011,9729093-9729180,9729293-9729366,9729452-9729526,9729621-9729848	AT1G27920.1  CDS  gene_syn F13K9.3, F13K9_3, MAP65-8, MICROTUBULE-ASSOCIATED PROTEIN 65-8  gene MAP65-8  go_component spindle|GO:0005819|15469496|IDA  go_component microtubule|GO:0005874|15469496|IDA  go_component microtubule|GO:0005874|19060108|IDA  go_component phragmoplast|GO:0009524|15469496|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MAP65-8 (MICROTUBULE-ASSOCIATED PROTEIN 65-8)  note MICROTUBULE-ASSOCIATED PROTEIN 65-8 (MAP65-8); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: microtubule, spindle, phragmoplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: MAP65/ASE1 (InterPro:IPR007145); BEST Arabidopsis thaliana protein match is: ATMAP65-1 (MICROTUBULE-ASSOCIATED PROTEINS 65-1); microtubule binding (TAIR:AT5G55230.1); Has 1540 Blast hits to 1393 proteins in 223 species: Archae - 23; Bacteria - 114; Metazoa - 607; Fungi - 143; Plants - 166; Viruses - 0; Other Eukaryotes - 487 (source: NCBI BLink).  protein_id AT1G27920.1p  transcript_id AT1G27920.1  protein_id AT1G27920.1p  transcript_id AT1G27920.1  
At1g27921	chr1:009728124	0.0	C/9728124-9730331	AT1G27921.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G27920  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G27921.1  
At1g27930	chr1:009731510	0.0	C/9731510-9732379	AT1G27930.1  CDS  gene_syn F13K9.4, F13K9_4  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579, plant (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67330.1); Has 160 Blast hits to 160 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G27930.1p  transcript_id AT1G27930.1  protein_id AT1G27930.1p  transcript_id AT1G27930.1  
At1g27940	chr1:009737857	0.0	C/9737857-9738129,9737692-9737746,9737421-9737596,9737149-9737349,9736699-9736958,9736088-9736628,9735227-9736010,9734882-9735123,9733597-9734802	AT1G27940.1  CDS  gene_syn F13K9.5, F13K9_5, P-GLYCOPROTEIN 13, PGP13  gene PGP13  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product PGP13 (P-GLYCOPROTEIN 13); ATPase, coupled to transmembrane movement of substances  note P-GLYCOPROTEIN 13 (PGP13); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: integral to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PGP14 (P-GLYCOPROTEIN 14); ATPase, coupled to transmembrane movement of substances (TAIR:AT1G28010.1); Has 508756 Blast hits to 236838 proteins in 2688 species: Archae - 8902; Bacteria - 338884; Metazoa - 15520; Fungi - 8253; Plants - 4460; Viruses - 60; Other Eukaryotes - 132677 (source: NCBI BLink).  protein_id AT1G27940.1p  transcript_id AT1G27940.1  protein_id AT1G27940.1p  transcript_id AT1G27940.1  
At1g27950	chr1:009740740	0.0	W/9740740-9741091,9741762-9741991	AT1G27950.1  CDS  gene_syn F13K9.6, F13K9_6, GLYCOSYLPHOSPHATIDYLINOSITOL-ANCHORED LIPID PROTEIN TRANSFER 1, LTPG1  gene LTPG1  function Encodes LTPG1, a lipid transfer protein with a predicted GPI (glycosylphosphatidylinositol)-anchor domain. Localized in the plasma membrane. Disruption of the LTPG1 gene causes alterations of cuticular lipid composition, but no significant changes on total wax and cutin monomer loads are seen.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component anchored to plasma membrane|GO:0046658|12805588|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component plasma membrane|GO:0005886|19321705|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process lipid transport|GO:0006869|19321705|IMP  go_function molecular_function|GO:0003674||ND  product LTPG1 (GLYCOSYLPHOSPHATIDYLINOSITOL-ANCHORED LIPID PROTEIN TRANSFER 1)  note GLYCOSYLPHOSPHATIDYLINOSITOL-ANCHORED LIPID PROTEIN TRANSFER 1 (LTPG1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lipid transport; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3) (TAIR:AT2G44290.1); Has 342 Blast hits to 338 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 342; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27950.1p  transcript_id AT1G27950.1  protein_id AT1G27950.1p  transcript_id AT1G27950.1  
At1g27960	chr1:009745597	0.0	C/9745597-9745648,9745263-9745309,9745127-9745184,9744601-9744662,9744058-9744498,9743480-9743968,9742975-9743187,9742359-9742616	AT1G27960.1  CDS  gene_syn ECT9, F13K9.7, F13K9_7, evolutionarily conserved C-terminal region 9  gene ECT9  function encodes a protein whose C-terminal region is similar to ECT1 and ECT2, which bind to CIPK1.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ECT9 (evolutionarily conserved C-terminal region 9)  note evolutionarily conserved C-terminal region 9 (ECT9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: YT521-B-like protein (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13060.2); Has 697 Blast hits to 696 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 344; Fungi - 86; Plants - 188; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT1G27960.1p  transcript_id AT1G27960.1  protein_id AT1G27960.1p  transcript_id AT1G27960.1  
At1g27970	chr1:009746921	0.0	W/9746921-9747226,9747713-9747771,9748267-9748306	AT1G27970.2  CDS  gene_syn F13K9.26, F13K9_26, NTF2B, NUCLEAR TRANSPORT FACTOR 2B  gene NTF2B  function Encodes an ortholog of yeast NTF2, a nuclear envelop transport protein that functions as the nuclear import receptor for RanGDP, an essential player in nucleocytoplasmic transport.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component intracellular|GO:0005622||ISS  go_component nucleus|GO:0005634||ISS  go_component nuclear envelope|GO:0005635|16428596|IDA  go_process protein import into nucleus|GO:0006606|16428596|IGI  go_process protein import into nucleus|GO:0006606||ISS  go_process nucleocytoplasmic transport|GO:0006913|16428596|IGI  go_function Ran GTPase binding|GO:0008536|16428596|IGI  go_function Ran GTPase binding|GO:0008536|16428596|IPI  go_function protein transporter activity|GO:0008565||ISS  product NTF2B (NUCLEAR TRANSPORT FACTOR 2B); Ran GTPase binding / protein transporter  note NUCLEAR TRANSPORT FACTOR 2B (NTF2B); FUNCTIONS IN: protein transporter activity, Ran GTPase binding; INVOLVED IN: nucleocytoplasmic transport, protein import into nucleus; LOCATED IN: nuclear envelope, nucleus, intracellular, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222); BEST Arabidopsis thaliana protein match is: NTF2A (NUCLEAR TRANSPORT FACTOR 2A); Ran GTPase binding / protein transporter (TAIR:AT1G27310.1); Has 690 Blast hits to 690 proteins in 165 species: Archae - 0; Bacteria - 0; Metazoa - 363; Fungi - 150; Plants - 115; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT1G27970.2p  transcript_id AT1G27970.2  protein_id AT1G27970.2p  transcript_id AT1G27970.2  
At1g27970	chr1:009746921	0.0	W/9746921-9747226,9747713-9747787	AT1G27970.1  CDS  gene_syn F13K9.26, F13K9_26, NTF2B, NUCLEAR TRANSPORT FACTOR 2B  gene NTF2B  function Encodes an ortholog of yeast NTF2, a nuclear envelop transport protein that functions as the nuclear import receptor for RanGDP, an essential player in nucleocytoplasmic transport.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component intracellular|GO:0005622||ISS  go_component nucleus|GO:0005634||ISS  go_component nuclear envelope|GO:0005635|16428596|IDA  go_process protein import into nucleus|GO:0006606|16428596|IGI  go_process protein import into nucleus|GO:0006606||ISS  go_process nucleocytoplasmic transport|GO:0006913|16428596|IGI  go_function Ran GTPase binding|GO:0008536|16428596|IGI  go_function Ran GTPase binding|GO:0008536|16428596|IPI  go_function protein transporter activity|GO:0008565||ISS  product NTF2B (NUCLEAR TRANSPORT FACTOR 2B); Ran GTPase binding / protein transporter  note NUCLEAR TRANSPORT FACTOR 2B (NTF2B); FUNCTIONS IN: protein transporter activity, Ran GTPase binding; INVOLVED IN: nucleocytoplasmic transport, protein import into nucleus; LOCATED IN: nuclear envelope, nucleus, intracellular, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222); BEST Arabidopsis thaliana protein match is: NTF2A (NUCLEAR TRANSPORT FACTOR 2A); Ran GTPase binding / protein transporter (TAIR:AT1G27310.1); Has 753 Blast hits to 753 proteins in 165 species: Archae - 0; Bacteria - 0; Metazoa - 414; Fungi - 156; Plants - 116; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT1G27970.1p  transcript_id AT1G27970.1  protein_id AT1G27970.1p  transcript_id AT1G27970.1  
At1g27980	chr1:009748812	0.0	W/9748812-9749023,9749128-9749173,9749573-9749724,9749833-9749892,9750021-9750245,9750332-9750473,9750681-9750731,9750833-9750924,9751205-9751331,9751640-9751655,9751740-9751847,9751943-9751997,9752075-9752221,9752315-9752393,9752496-9752618	AT1G27980.1  CDS  gene_syn DPL1, F13K9.8, F13K9_8  gene DPL1  go_component membrane|GO:0016020|17432890|IDA  go_function catalytic activity|GO:0003824||IEA  go_function carboxy-lyase activity|GO:0016831||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum|GO:0005783|17635905|IDA  go_component endoplasmic reticulum|GO:0005783|18643979|IDA  go_process amino acid metabolic process|GO:0006520||ISS  go_process sphingolipid catabolic process|GO:0030149|17635905|IMP  go_function carboxy-lyase activity|GO:0016831||ISS  product DPL1; carboxy-lyase/ catalytic/ pyridoxal phosphate binding  note DPL1; FUNCTIONS IN: pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity; INVOLVED IN: amino acid metabolic process, sphingolipid catabolic process; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: GAD5 (glutamate decarboxylase 5); calmodulin binding (TAIR:AT3G17760.2); Has 3835 Blast hits to 3826 proteins in 964 species: Archae - 162; Bacteria - 2428; Metazoa - 269; Fungi - 314; Plants - 180; Viruses - 3; Other Eukaryotes - 479 (source: NCBI BLink).  protein_id AT1G27980.1p  transcript_id AT1G27980.1  protein_id AT1G27980.1p  transcript_id AT1G27980.1  
At1g27990	chr1:009753603	0.0	C/9753603-9753919,9753101-9753389,9752799-9753008	AT1G27990.1  CDS  gene_syn F13K9.9, F13K9_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52420.1); Has 43 Blast hits to 43 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27990.1p  transcript_id AT1G27990.1  protein_id AT1G27990.1p  transcript_id AT1G27990.1  
At1g28000	chr1:009757690	0.0	C/9757690-9757947,9756674-9757582	AT1G28000.1  CDS  gene_syn F13K9.10, F13K9_10  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G28020.1); Has 219 Blast hits to 213 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 216; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G28000.1p  transcript_id AT1G28000.1  protein_id AT1G28000.1p  transcript_id AT1G28000.1  
At1g28002	chr1:009759212	0.0	W/9759212-9760165	AT1G28002.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G27260; Homeodomain-like protein  
At1g28007	chr1:009762024	0.0	W/9762024-9762209	AT1G28007.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G28007.1p  transcript_id AT1G28007.1  protein_id AT1G28007.1p  transcript_id AT1G28007.1  
At1g28010	chr1:009763436	0.0	W/9763436-9763711,9763790-9763844,9763930-9764105,9764177-9764377,9764566-9764825,9764906-9765446,9765524-9766310,9766392-9766633,9766712-9767917	AT1G28010.1  CDS  gene_syn F13K9.11, F13K9_11, P-GLYCOPROTEIN 14, PGP14  gene PGP14  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product PGP14 (P-GLYCOPROTEIN 14); ATPase, coupled to transmembrane movement of substances  note P-GLYCOPROTEIN 14 (PGP14); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: integral to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PGP13 (P-GLYCOPROTEIN 13); ATPase, coupled to transmembrane movement of substances (TAIR:AT1G27940.1); Has 510596 Blast hits to 237604 proteins in 2691 species: Archae - 8934; Bacteria - 339970; Metazoa - 15820; Fungi - 8089; Plants - 4531; Viruses - 46; Other Eukaryotes - 133206 (source: NCBI BLink).  protein_id AT1G28010.1p  transcript_id AT1G28010.1  protein_id AT1G28010.1p  transcript_id AT1G28010.1  
At1g28020	chr1:009771041	0.0	C/9771041-9771157,9770228-9770377,9768949-9770140,9768722-9768859,9768395-9768636	AT1G28020.1  CDS  gene_syn F13K9.12, F13K9_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G11380.1); Has 1079 Blast hits to 755 proteins in 35 species: Archae - 0; Bacteria - 16; Metazoa - 6; Fungi - 0; Plants - 1030; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT1G28020.1p  transcript_id AT1G28020.1  protein_id AT1G28020.1p  transcript_id AT1G28020.1  
At1g28030	chr1:009771793	0.0	W/9771793-9772175,9772661-9772997,9773097-9773345	AT1G28030.1  CDS  gene_syn F13K9.13, F13K9_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function 2-oxoglutarate-dependent dioxygenase activity|GO:0010302|16299181|ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: 2-oxoglutarate-dependent dioxygenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase, putative (TAIR:AT1G52820.1); Has 3261 Blast hits to 3218 proteins in 419 species: Archae - 0; Bacteria - 190; Metazoa - 24; Fungi - 183; Plants - 2531; Viruses - 0; Other Eukaryotes - 333 (source: NCBI BLink).  protein_id AT1G28030.1p  transcript_id AT1G28030.1  protein_id AT1G28030.1p  transcript_id AT1G28030.1  
At1g28040	chr1:009774424	0.0	C/9774424-9774910,9773580-9773992	AT1G28040.1  CDS  gene_syn F13K9.14, F13K9_14  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G46495.1); Has 5552 Blast hits to 5534 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 1700; Fungi - 326; Plants - 2667; Viruses - 19; Other Eukaryotes - 840 (source: NCBI BLink).  protein_id AT1G28040.1p  transcript_id AT1G28040.1  protein_id AT1G28040.1p  transcript_id AT1G28040.1  
At1g28050	chr1:009776872	0.0	C/9776872-9777657,9776513-9776680,9775984-9776228,9775768-9775870	AT1G28050.1  CDS  gene_syn F13K9.15, F13K9_15  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (B-box type) family protein  note zinc finger (B-box type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: zinc finger (B-box type) family protein (TAIR:AT2G33500.2); Has 1872 Blast hits to 1279 proteins in 90 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1798; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT1G28050.1p  transcript_id AT1G28050.1  protein_id AT1G28050.1p  transcript_id AT1G28050.1  
At1g28060	chr1:009779167	0.0	W/9779167-9779643,9779757-9780038,9780130-9780507,9780590-9780784,9780882-9781036,9781613-9782486	AT1G28060.1  CDS  gene_syn F13K9.16, F13K9_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product small nuclear ribonucleoprotein family protein / snRNP family protein  note small nuclear ribonucleoprotein family protein / snRNP family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pre-mRNA-splicing factor 3 (InterPro:IPR013881); BEST Arabidopsis thaliana protein match is: RNA splicing factor-related (TAIR:AT3G55930.1); Has 21413 Blast hits to 11192 proteins in 554 species: Archae - 18; Bacteria - 874; Metazoa - 11490; Fungi - 2755; Plants - 1540; Viruses - 94; Other Eukaryotes - 4642 (source: NCBI BLink).  protein_id AT1G28060.1p  transcript_id AT1G28060.1  protein_id AT1G28060.1p  transcript_id AT1G28060.1  
At1g28070	chr1:009783082	0.0	W/9783082-9783264,9783517-9783864	AT1G28070.1  CDS  gene_syn F13K9.17, F13K9_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: protein binding (TAIR:AT2G33510.1); Has 40 Blast hits to 35 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28070.1p  transcript_id AT1G28070.1  protein_id AT1G28070.1p  transcript_id AT1G28070.1  
At1g28080	chr1:009789826	0.0	W/9789826-9790565,9790674-9790724,9790834-9790918	AT1G28080.1  CDS  gene_syn F13K9.18, F13K9_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13250.1); Has 60 Blast hits to 60 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28080.1p  transcript_id AT1G28080.1  protein_id AT1G28080.1p  transcript_id AT1G28080.1  
At1g28090	chr1:009795826	0.0	W/9795826-9795948,9796060-9796135,9796246-9796380,9796626-9796723,9796836-9796919,9797034-9797164,9797257-9797329,9797426-9797471,9797569-9797678,9797776-9797883,9797975-9798034,9798142-9798203,9798282-9798603,9798694-9798891	AT1G28090.1  CDS  gene_syn F13K9.19, F13K9_19  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_component cellular_component|GO:0005575||ND  go_process RNA processing|GO:0006396||ISS  go_function RNA binding|GO:0003723||ISS  product polynucleotide adenylyltransferase family protein  note polynucleotide adenylyltransferase family protein; FUNCTIONS IN: RNA binding, nucleotidyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotide adenylyltransferase region (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: polynucleotide adenylyltransferase family protein (TAIR:AT5G23690.1); Has 6227 Blast hits to 6223 proteins in 1431 species: Archae - 2; Bacteria - 3614; Metazoa - 116; Fungi - 173; Plants - 58; Viruses - 8; Other Eukaryotes - 2256 (source: NCBI BLink).  protein_id AT1G28090.1p  transcript_id AT1G28090.1  protein_id AT1G28090.1p  transcript_id AT1G28090.1  
At1g28090	chr1:009796045	0.0	W/9796045-9796135,9796246-9796380,9796626-9796723,9796836-9796919,9797034-9797164,9797257-9797329,9797426-9797471,9797569-9797678,9797776-9797883,9797975-9798034,9798142-9798203,9798282-9798603,9798694-9798891	AT1G28090.2  CDS  gene_syn F13K9.19, F13K9_19  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_component cellular_component|GO:0005575||ND  go_process RNA processing|GO:0006396||ISS  go_function RNA binding|GO:0003723||ISS  product polynucleotide adenylyltransferase family protein  note polynucleotide adenylyltransferase family protein; FUNCTIONS IN: RNA binding, nucleotidyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotide adenylyltransferase region (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: polynucleotide adenylyltransferase family protein (TAIR:AT5G23690.1); Has 6227 Blast hits to 6223 proteins in 1431 species: Archae - 2; Bacteria - 3614; Metazoa - 116; Fungi - 173; Plants - 58; Viruses - 8; Other Eukaryotes - 2256 (source: NCBI BLink).  protein_id AT1G28090.2p  transcript_id AT1G28090.2  protein_id AT1G28090.2p  transcript_id AT1G28090.2  
At1g28090	chr1:009796236	0.0	W/9796236-9796380,9796626-9796723,9796836-9796919,9797034-9797164,9797257-9797329,9797426-9797471,9797569-9797678,9797776-9797883,9797975-9798034,9798142-9798203,9798282-9798603,9798694-9798891	AT1G28090.3  CDS  gene_syn F13K9.19, F13K9_19  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_component cellular_component|GO:0005575||ND  go_process RNA processing|GO:0006396||ISS  go_function RNA binding|GO:0003723||ISS  product polynucleotide adenylyltransferase family protein  note polynucleotide adenylyltransferase family protein; FUNCTIONS IN: RNA binding, nucleotidyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotide adenylyltransferase region (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: polynucleotide adenylyltransferase family protein (TAIR:AT5G23690.1); Has 6227 Blast hits to 6223 proteins in 1431 species: Archae - 2; Bacteria - 3614; Metazoa - 116; Fungi - 173; Plants - 58; Viruses - 8; Other Eukaryotes - 2256 (source: NCBI BLink).  protein_id AT1G28090.3p  transcript_id AT1G28090.3  protein_id AT1G28090.3p  transcript_id AT1G28090.3  
At1g28100	chr1:009802120	0.0	W/9802120-9802184,9802268-9802351,9802437-9802500,9802575-9802621,9802764-9802818,9802916-9802954,9803207-9803375,9803489-9803546,9803624-9803676,9803771-9803775	AT1G28100.5  CDS  gene_syn F13K9.27, F13K9_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 43 Blast hits to 43 proteins in 19 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 4; Plants - 23; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G28100.5p  transcript_id AT1G28100.5  protein_id AT1G28100.5p  transcript_id AT1G28100.5  
At1g28100	chr1:009802120	0.0	W/9802120-9802184,9802268-9802351,9802437-9802500,9802575-9802621,9802764-9802818,9802916-9802954,9803207-9803375,9803489-9803546,9803624-9803680,9803771-9803981	AT1G28100.1  CDS  gene_syn F13K9.27, F13K9_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 43 Blast hits to 43 proteins in 19 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 4; Plants - 23; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G28100.1p  transcript_id AT1G28100.1  protein_id AT1G28100.1p  transcript_id AT1G28100.1  
At1g28100	chr1:009802120	0.0	W/9802120-9802184,9802268-9802351,9802437-9802500,9802575-9802621,9802764-9802818,9802916-9802954,9803207-9803375,9803489-9803546,9803624-9803680,9803771-9803981	AT1G28100.2  CDS  gene_syn F13K9.27, F13K9_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 43 Blast hits to 43 proteins in 19 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 4; Plants - 23; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G28100.2p  transcript_id AT1G28100.2  protein_id AT1G28100.2p  transcript_id AT1G28100.2  
At1g28100	chr1:009802120	0.0	W/9802120-9802184,9802268-9802351,9802437-9802500,9802575-9802621,9802764-9802818,9802916-9802954,9803207-9803375,9803489-9803546,9803624-9803680,9803771-9803981	AT1G28100.3  CDS  gene_syn F13K9.27, F13K9_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 43 Blast hits to 43 proteins in 19 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 4; Plants - 23; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G28100.3p  transcript_id AT1G28100.3  protein_id AT1G28100.3p  transcript_id AT1G28100.3  
At1g28100	chr1:009802120	0.0	W/9802120-9802184,9802268-9802351,9802437-9802500,9802575-9802621,9802764-9802818,9802916-9802978,9803207-9803375,9803489-9803546,9803624-9803680,9803771-9803981	AT1G28100.4  CDS  gene_syn F13K9.27, F13K9_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 43 Blast hits to 43 proteins in 19 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 4; Plants - 23; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G28100.4p  transcript_id AT1G28100.4  protein_id AT1G28100.4p  transcript_id AT1G28100.4  
At1g28110	chr1:009806586	0.0	C/9806586-9806832,9806394-9806495,9806215-9806310,9805517-9805609,9805347-9805426,9804990-9805271,9804771-9804895,9804577-9804669,9804382-9804499,9804153-9804302	AT1G28110.1  CDS  gene_syn F13K9.20, F13K9_20, SCPL45, SERINE CARBOXYPEPTIDASE-LIKE 45 PRECURSOR  gene SCPL45  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product SCPL45 (SERINE CARBOXYPEPTIDASE-LIKE 45 PRECURSOR); serine-type carboxypeptidase  note SERINE CARBOXYPEPTIDASE-LIKE 45 PRECURSOR (SCPL45); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl46 (serine carboxypeptidase-like 46); serine-type carboxypeptidase (TAIR:AT2G33530.1); Has 2581 Blast hits to 2531 proteins in 335 species: Archae - 0; Bacteria - 249; Metazoa - 573; Fungi - 560; Plants - 874; Viruses - 0; Other Eukaryotes - 325 (source: NCBI BLink).  protein_id AT1G28110.1p  transcript_id AT1G28110.1  protein_id AT1G28110.1p  transcript_id AT1G28110.1  
At1g28110	chr1:009806586	0.0	C/9806586-9806832,9806394-9806495,9806215-9806310,9805517-9805609,9805347-9805426,9804990-9805271,9804771-9804895,9804577-9804669,9804382-9804499,9804153-9804302	AT1G28110.2  CDS  gene_syn F13K9.20, F13K9_20, SCPL45, SERINE CARBOXYPEPTIDASE-LIKE 45 PRECURSOR  gene SCPL45  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product SCPL45 (SERINE CARBOXYPEPTIDASE-LIKE 45 PRECURSOR); serine-type carboxypeptidase  note SERINE CARBOXYPEPTIDASE-LIKE 45 PRECURSOR (SCPL45); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl46 (serine carboxypeptidase-like 46); serine-type carboxypeptidase (TAIR:AT2G33530.1); Has 2581 Blast hits to 2531 proteins in 335 species: Archae - 0; Bacteria - 249; Metazoa - 573; Fungi - 560; Plants - 874; Viruses - 0; Other Eukaryotes - 325 (source: NCBI BLink).  protein_id AT1G28110.2p  transcript_id AT1G28110.2  protein_id AT1G28110.2p  transcript_id AT1G28110.2  
At1g28120	chr1:009814988	0.0	C/9814988-9815143,9814792-9814857,9814629-9814712,9814373-9814495,9814223-9814275,9814027-9814076,9813853-9813953,9813325-9813588,9813219-9813242	AT1G28120.1  CDS  gene_syn F13K9.21, F13K9_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin thioesterase Otubain (InterPro:IPR016615), Ovarian tumour, otubain (InterPro:IPR003323); Has 295 Blast hits to 295 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 150; Fungi - 50; Plants - 47; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT1G28120.1p  transcript_id AT1G28120.1  protein_id AT1G28120.1p  transcript_id AT1G28120.1  
At1g28130	chr1:009825431	0.0	W/9825431-9825726,9825836-9825937,9826348-9827189,9827294-9827883	AT1G28130.1  CDS  gene_syn F3H9.21, F3H9_21, GH3.17  gene GH3.17  function encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin.  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process response to auxin stimulus|GO:0009733|15659623|IMP  go_process response to auxin stimulus|GO:0009733||ISS  go_process auxin homeostasis|GO:0010252|15659623|TAS  go_function indole-3-acetic acid amido synthetase activity|GO:0010279|15659623|IDA  product GH3.17; indole-3-acetic acid amido synthetase  note GH3.17; FUNCTIONS IN: indole-3-acetic acid amido synthetase activity; INVOLVED IN: auxin homeostasis, response to auxin stimulus; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: DFL1 (DWARF IN LIGHT 1); indole-3-acetic acid amido synthetase (TAIR:AT5G54510.1); Has 668 Blast hits to 628 proteins in 114 species: Archae - 0; Bacteria - 210; Metazoa - 51; Fungi - 2; Plants - 219; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).  protein_id AT1G28130.1p  transcript_id AT1G28130.1  protein_id AT1G28130.1p  transcript_id AT1G28130.1  
At1g28130	chr1:009826379	0.0	W/9826379-9827189,9827294-9827883	AT1G28130.2  CDS  gene_syn F3H9.21, F3H9_21, GH3.17  gene GH3.17  function encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin.  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process response to auxin stimulus|GO:0009733|15659623|IMP  go_process response to auxin stimulus|GO:0009733||ISS  go_process auxin homeostasis|GO:0010252|15659623|TAS  go_function indole-3-acetic acid amido synthetase activity|GO:0010279|15659623|IDA  product GH3.17; indole-3-acetic acid amido synthetase  note GH3.17; FUNCTIONS IN: indole-3-acetic acid amido synthetase activity; INVOLVED IN: auxin homeostasis, response to auxin stimulus; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: DFL1 (DWARF IN LIGHT 1); indole-3-acetic acid amido synthetase (TAIR:AT5G54510.1); Has 480 Blast hits to 479 proteins in 102 species: Archae - 0; Bacteria - 141; Metazoa - 49; Fungi - 2; Plants - 214; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT1G28130.2p  transcript_id AT1G28130.2  protein_id AT1G28130.2p  transcript_id AT1G28130.2  
At1g28135	chr1:009829332	0.0	W/9829332-9829487	AT1G28135.1  CDS  gene_syn F3H9.27, F3H9_27  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28135.1p  transcript_id AT1G28135.1  protein_id AT1G28135.1p  transcript_id AT1G28135.1  
At1g28140	chr1:009834181	0.0	C/9834181-9834390,9833660-9834023,9833512-9833582,9833247-9833345,9833029-9833127	AT1G28140.1  CDS  gene_syn F3H9.20, F3H9_20  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 111 Blast hits to 111 proteins in 58 species: Archae - 0; Bacteria - 74; Metazoa - 7; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G28140.1p  transcript_id AT1G28140.1  protein_id AT1G28140.1p  transcript_id AT1G28140.1  
At1g28150	chr1:009835771	0.0	C/9835771-9835842,9835567-9835683,9835122-9835304	AT1G28150.1  CDS  gene_syn F13K9.24  go_component plastoglobule|GO:0010287|16414959|IDA  go_component plastoglobule|GO:0010287|16461379|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 65 Blast hits to 65 proteins in 30 species: Archae - 0; Bacteria - 43; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28150.1p  transcript_id AT1G28150.1  protein_id AT1G28150.1p  transcript_id AT1G28150.1  
At1g28160	chr1:009839387	0.0	W/9839387-9840124	AT1G28160.1  CDS  gene_syn F3H9.18, F3H9_18  function encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9687012|TAS  go_function transcription factor activity|GO:0003700||ISS  product ethylene-responsive element-binding family protein  note ethylene-responsive element-binding family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: ethylene mediated signaling pathway, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: LEP (LEAFY PETIOLE); DNA binding / transcription factor (TAIR:AT5G13910.1); Has 3566 Blast hits to 3532 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 3509; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT1G28160.1p  transcript_id AT1G28160.1  protein_id AT1G28160.1p  transcript_id AT1G28160.1  
At1g28170	chr1:009841332	0.0	W/9841332-9842312	AT1G28170.1  CDS  gene_syn F3H9.17, F3H9_17  go_function sulfotransferase activity|GO:0008146||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function sulfotransferase activity|GO:0008146||ISS  product sulfotransferase family protein  note sulfotransferase family protein; FUNCTIONS IN: sulfotransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Sulfotransferase (InterPro:IPR000863); BEST Arabidopsis thaliana protein match is: ST4B (SULFOTRANSFERASE 4B); brassinosteroid sulfotransferase/ sulfotransferase (TAIR:AT1G13420.1); Has 2219 Blast hits to 2182 proteins in 146 species: Archae - 0; Bacteria - 149; Metazoa - 1447; Fungi - 1; Plants - 307; Viruses - 0; Other Eukaryotes - 315 (source: NCBI BLink).  protein_id AT1G28170.1p  transcript_id AT1G28170.1  protein_id AT1G28170.1p  transcript_id AT1G28170.1  
At1g28180	chr1:009844309	0.0	C/9844309-9845002,9843084-9844234	AT1G28180.1  CDS  gene_syn F3H9.16  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding  note ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase, putative (TAIR:AT2G33730.1).  protein_id AT1G28180.1p  transcript_id AT1G28180.1  protein_id AT1G28180.1p  transcript_id AT1G28180.1  
At1g28190	chr1:009847015	0.0	C/9847015-9847815	AT1G28190.1  CDS  gene_syn F3H9.15, F3H9_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12340.1); Has 113 Blast hits to 106 proteins in 30 species: Archae - 0; Bacteria - 2; Metazoa - 25; Fungi - 5; Plants - 61; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT1G28190.1p  transcript_id AT1G28190.1  protein_id AT1G28190.1p  transcript_id AT1G28190.1  
At1g28200	chr1:009852075	0.0	C/9852075-9852300,9851888-9851989,9851204-9851475,9850395-9850574	AT1G28200.1  CDS  gene_syn F3H9.14, F3H9_14, FH INTERACTING PROTEIN 1, FIP1  gene FIP1  function VirF-interacting protein FIP1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product FIP1 (FH INTERACTING PROTEIN 1)  note FH INTERACTING PROTEIN 1 (FIP1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182); BEST Arabidopsis thaliana protein match is: GEM (GL2-EXPRESSION MODULATOR) (TAIR:AT2G22475.1); Has 254 Blast hits to 249 proteins in 32 species: Archae - 4; Bacteria - 11; Metazoa - 9; Fungi - 13; Plants - 204; Viruses - 1; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G28200.1p  transcript_id AT1G28200.1  protein_id AT1G28200.1p  transcript_id AT1G28200.1  
At1g28210	chr1:009854598	0.0	W/9854598-9854615,9854736-9854793,9855214-9855255,9855349-9855440,9855565-9855648,9855735-9855773,9855857-9855967,9856045-9856080,9856199-9856286,9856713-9856777,9856877-9856939,9857026-9857098,9857496-9857587,9858021-9858092,9858649-9858705,9858850-9858898,9858979-9859048,9859371-9859460,9859857-9859884	AT1G28210.1  CDS  gene_syn ATJ, ATJ1, F3H9.13, F3H9_13  gene ATJ1  function DnaJ homolog AtJ1 (atj)  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component mitochondrion|GO:0005739|8790294|ISS  go_process protein folding|GO:0006457||ISS  product ATJ1; heat shock protein binding / unfolded protein binding  note ATJ1; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, cysteine-rich region (InterPro:IPR001305), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: GFA2 (GAMETOPHYTIC FACTOR 2); heat shock protein binding / unfolded protein binding (TAIR:AT5G48030.1); Has 20162 Blast hits to 19528 proteins in 2094 species: Archae - 123; Bacteria - 6102; Metazoa - 3651; Fungi - 1479; Plants - 1286; Viruses - 15; Other Eukaryotes - 7506 (source: NCBI BLink).  protein_id AT1G28210.1p  transcript_id AT1G28210.1  protein_id AT1G28210.1p  transcript_id AT1G28210.1  
At1g28210	chr1:009854598	0.0	W/9854598-9854615,9854736-9854793,9855214-9855255,9855349-9855440,9855565-9855648,9855735-9855773,9855857-9855967,9856045-9856080,9856199-9856286,9856713-9856777,9856877-9856939,9857026-9857098,9857496-9857587,9858021-9858092,9858649-9858705,9858850-9858898,9858979-9859048,9859371-9859460,9859893-9859977	AT1G28210.2  CDS  gene_syn ATJ, ATJ1, F3H9.13, F3H9_13  gene ATJ1  function DnaJ homolog AtJ1 (atj)  go_process protein folding|GO:0006457||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component mitochondrion|GO:0005739|8790294|ISS  go_process protein folding|GO:0006457||ISS  product ATJ1; heat shock protein binding / nucleic acid binding / unfolded protein binding / zinc ion binding  note ATJ1; FUNCTIONS IN: unfolded protein binding, heat shock protein binding, zinc ion binding, nucleic acid binding; INVOLVED IN: protein folding; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), Heat shock protein DnaJ, cysteine-rich region (InterPro:IPR001305), Zinc finger, CCHC-type (InterPro:IPR001878), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: GFA2 (GAMETOPHYTIC FACTOR 2); heat shock protein binding / unfolded protein binding (TAIR:AT5G48030.1); Has 20162 Blast hits to 19528 proteins in 2094 species: Archae - 123; Bacteria - 6102; Metazoa - 3651; Fungi - 1479; Plants - 1286; Viruses - 15; Other Eukaryotes - 7506 (source: NCBI BLink).  protein_id AT1G28210.2p  transcript_id AT1G28210.2  protein_id AT1G28210.2p  transcript_id AT1G28210.2  
At1g28220	chr1:009860745	0.0	C/9860745-9861434,9860303-9860668	AT1G28220.1  CDS  gene_syn ATPUP3, F3H9.12, F3H9_12  gene ATPUP3  function Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.  go_component membrane|GO:0016020|10662864|TAS  go_process purine transport|GO:0006863|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345||ISS  product ATPUP3; purine transmembrane transporter  note ATPUP3; FUNCTIONS IN: purine transmembrane transporter activity; INVOLVED IN: purine transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: ATPUP2; purine transmembrane transporter (TAIR:AT2G33750.2); Has 517 Blast hits to 508 proteins in 110 species: Archae - 0; Bacteria - 82; Metazoa - 82; Fungi - 2; Plants - 229; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT1G28220.1p  transcript_id AT1G28220.1  protein_id AT1G28220.1p  transcript_id AT1G28220.1  
At1g28230	chr1:009863847	0.0	C/9863847-9864554,9862200-9862562	AT1G28230.1  CDS  gene_syn ATPUP1, F3H9.22, F3H9_22, PUP1, PURINE PERMEASE 1  gene PUP1  function Encodes a transporter that transports purines,cytokinins and other adenine derivatives. Expressed in the leaf hydathodes where it may be involved in re-uptake of cytokinins during guttation.  go_component integral to plasma membrane|GO:0005887|10662864|ISS  go_process purine transport|GO:0006863|12662305|IDA  go_process cytokinin transport|GO:0010184|12662305|IDA  go_function purine transmembrane transporter activity|GO:0005345|12662305|IDA  go_function purine transmembrane transporter activity|GO:0005345||ISS  go_function purine nucleoside transmembrane transporter activity|GO:0015211|12662305|IDA  product PUP1 (PURINE PERMEASE 1); purine nucleoside transmembrane transporter/ purine transmembrane transporter  note PURINE PERMEASE 1 (PUP1); FUNCTIONS IN: purine nucleoside transmembrane transporter activity, purine transmembrane transporter activity; INVOLVED IN: purine transport, cytokinin transport; LOCATED IN: integral to plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: ATPUP2; purine transmembrane transporter (TAIR:AT2G33750.2); Has 390 Blast hits to 383 proteins in 50 species: Archae - 3; Bacteria - 50; Metazoa - 10; Fungi - 8; Plants - 213; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).  protein_id AT1G28230.1p  transcript_id AT1G28230.1  protein_id AT1G28230.1p  transcript_id AT1G28230.1  
At1g28240	chr1:009871558	0.0	C/9871558-9871798,9871033-9871290,9870645-9870858,9870459-9870568,9870163-9870362,9869701-9869804,9869138-9869325,9868850-9869049,9868521-9868751	AT1G28240.1  CDS  gene_syn F3H9.11, F3H9_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF616 (InterPro:IPR006852); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53040.2); Has 193 Blast hits to 193 proteins in 28 species: Archae - 6; Bacteria - 19; Metazoa - 1; Fungi - 4; Plants - 118; Viruses - 1; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT1G28240.1p  transcript_id AT1G28240.1  protein_id AT1G28240.1p  transcript_id AT1G28240.1  
At1g28250	chr1:009874296	0.0	W/9874296-9874364,9874450-9874607,9875094-9875175	AT1G28250.1  CDS  gene_syn F3H9.10, F3H9_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 10 Blast hits to 10 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28250.1p  transcript_id AT1G28250.1  protein_id AT1G28250.1p  transcript_id AT1G28250.1  
At1g28260	chr1:009878732	0.0	C/9878732-9878782,9878150-9878650,9877955-9878077,9877685-9877866,9875776-9877561	AT1G28260.1  CDS  gene_syn F3H9.9, F3H9_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: SMG7 (TAIR:AT5G19400.1); Has 341 Blast hits to 340 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 225; Fungi - 71; Plants - 35; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G28260.1p  transcript_id AT1G28260.1  protein_id AT1G28260.1p  transcript_id AT1G28260.1  
At1g28260	chr1:009878732	0.0	C/9878732-9878782,9878150-9878650,9877955-9878077,9877685-9877866,9875776-9877561	AT1G28260.2  CDS  gene_syn F3H9.9, F3H9_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: SMG7 (TAIR:AT5G19400.1); Has 341 Blast hits to 340 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 225; Fungi - 71; Plants - 35; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G28260.2p  transcript_id AT1G28260.2  protein_id AT1G28260.2p  transcript_id AT1G28260.2  
At1g28270	chr1:009883165	0.0	W/9883165-9883497	AT1G28270.1  CDS  gene_syn F3H9.8, F3H9_8, RALFL4, ralf-like 4  gene RALFL4  function Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  go_component apoplast|GO:0048046|12611624|ISS  go_process cell-cell signaling|GO:0007267|12611624|ISS  go_function signal transducer activity|GO:0004871|12611624|TAS  product RALFL4 (ralf-like 4); signal transducer  note ralf-like 4 (RALFL4); FUNCTIONS IN: signal transducer activity; INVOLVED IN: cell-cell signaling; LOCATED IN: apoplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALFL19 (ralf-like 19); signal transducer (TAIR:AT2G33775.1); Has 152 Blast hits to 152 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 150; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28270.1p  transcript_id AT1G28270.1  protein_id AT1G28270.1p  transcript_id AT1G28270.1  
At1g28280	chr1:009886652	0.0	C/9886652-9887395	AT1G28280.1  CDS  gene_syn F3H9.7, F3H9_7  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product VQ motif-containing protein  note VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT2G33780.1); Has 170 Blast hits to 161 proteins in 41 species: Archae - 0; Bacteria - 2; Metazoa - 34; Fungi - 28; Plants - 85; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G28280.1p  transcript_id AT1G28280.1  protein_id AT1G28280.1p  transcript_id AT1G28280.1  
At1g28280	chr1:009886678	0.0	C/9886678-9887395,9886297-9886310	AT1G28280.2  CDS  gene_syn F3H9.7, F3H9_7  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product VQ motif-containing protein  note VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT2G33780.1); Has 130 Blast hits to 123 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 21; Plants - 83; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G28280.2p  transcript_id AT1G28280.2  protein_id AT1G28280.2p  transcript_id AT1G28280.2  
At1g28281	chr1:009887519	0.0	W/9887519-9887656	AT1G28281.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G28281.1p  transcript_id AT1G28281.1  protein_id AT1G28281.1p  transcript_id AT1G28281.1  
At1g28290	chr1:009890075	0.0	C/9890075-9890843,9889331-9889641	AT1G28290.1  CDS  gene_syn AGP31, F3H9.6, F3H9_6, arabinogalactan-protein 31  gene AGP31  function Encodes an atypical arabinogalactan protein that is localized to the plasma membrange. AGP31 is highly expressed in flowers and vascular tissue and is repressed by jasmonic acid. AGP31 may play a role in vascular tissue function during defense and development.  go_component plasma membrane|GO:0005886|17885091|IDA  go_process response to jasmonic acid stimulus|GO:0009753|17885091|IEP  product AGP31 (arabinogalactan-protein 31)  note arabinogalactan-protein 31 (AGP31); INVOLVED IN: response to jasmonic acid stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen and extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: AGP30 (ARABINOGALACTAN PROTEIN30) (TAIR:AT2G33790.1); Has 133583 Blast hits to 38239 proteins in 1705 species: Archae - 537; Bacteria - 28088; Metazoa - 46884; Fungi - 12945; Plants - 14744; Viruses - 4641; Other Eukaryotes - 25744 (source: NCBI BLink).  protein_id AT1G28290.1p  transcript_id AT1G28290.1  protein_id AT1G28290.1p  transcript_id AT1G28290.1  
At1g28290	chr1:009890397	0.0	C/9890397-9890843,9890075-9890264,9889331-9889641	AT1G28290.2  CDS  gene_syn AGP31, F3H9.6, F3H9_6, arabinogalactan-protein 31  gene AGP31  function Encodes an atypical arabinogalactan protein that is localized to the plasma membrange. AGP31 is highly expressed in flowers and vascular tissue and is repressed by jasmonic acid. AGP31 may play a role in vascular tissue function during defense and development.  go_component plasma membrane|GO:0005886|17885091|IDA  go_process response to jasmonic acid stimulus|GO:0009753|17885091|IEP  product AGP31 (arabinogalactan-protein 31)  note arabinogalactan-protein 31 (AGP31); INVOLVED IN: response to jasmonic acid stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen and extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: AGP30 (ARABINOGALACTAN PROTEIN30) (TAIR:AT2G33790.1); Has 92586 Blast hits to 31250 proteins in 1565 species: Archae - 349; Bacteria - 17543; Metazoa - 32125; Fungi - 8447; Plants - 11990; Viruses - 3096; Other Eukaryotes - 19036 (source: NCBI BLink).  protein_id AT1G28290.2p  transcript_id AT1G28290.2  protein_id AT1G28290.2p  transcript_id AT1G28290.2  
At1g28300	chr1:009899344	0.0	C/9899344-9899838,9899112-9899186,9898117-9898217,9897886-9897932,9897703-9897776,9897054-9897353	AT1G28300.1  CDS  gene_syn F3H9.5, F3H9_5, LEAFY COTYLEDON 2, LEC2  gene LEC2  function Transcription factor that contains a B3 domain, a DNA-binding motif unique to plants and characteristic of several transcription factors. Plays critical roles both early and late during embryo development. LEC2 RNA accumulates primarily during seed development. LEC2 is required for the maintenance of suspensor morphology, specification of cotyledon identity, progression through the maturation phase, and suppression of premature germination. It establishes a cellular environment sufficient to initiate embryo development - ectopic, postembryonic expression of LEC2 in transgenic plants induces the formation of somatic embryos and other organ-like structures and often confers embryonic characteristics to seedlings and to reproductive and vegetative organs of mature plants.  go_component cellular_component|GO:0005575||ND  go_process response to heat|GO:0009408|10759505|IMP  go_process embryonic development|GO:0009790|12244265|IMP  go_process somatic embryogenesis|GO:0010262|11573014|IMP  go_process seed oilbody biogenesis|GO:0010344|18287041|IMP  go_process seed maturation|GO:0010431|18287041|IMP  go_process positive regulation of auxin biosynthetic process|GO:0010601|18287041|IMP  go_process positive regulation of transcription, DNA-dependent|GO:0045893|16492731|IDA  go_function DNA binding|GO:0003677|16492731|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12244265|ISS  go_function transcription factor activity|GO:0003700|16492731|IDA  product LEC2 (LEAFY COTYLEDON 2); DNA binding / transcription factor  note LEAFY COTYLEDON 2 (LEC2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 7 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured somatic embryo; EXPRESSED DURING: seedling growth, C globular stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: FUS3 (FUSCA 3); DNA binding / transcription activator/ transcription factor (TAIR:AT3G26790.1); Has 298 Blast hits to 297 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 298; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28300.1p  transcript_id AT1G28300.1  protein_id AT1G28300.1p  transcript_id AT1G28300.1  
At1g28304	chr1:009903567	0.0	W/9903567-9903680,9903778-9903805,9903919-9904010	AT1G28304.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT1G28304.1p  transcript_id AT1G28304.1  protein_id AT1G28304.1p  transcript_id AT1G28304.1  
At1g28305	chr1:009905026	0.0	C/9905026-9905439	AT1G28305.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28306.1); Has 67 Blast hits to 67 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28305.1p  transcript_id AT1G28305.1  protein_id AT1G28305.1p  transcript_id AT1G28305.1  
At1g28306	chr1:009907202	0.0	C/9907202-9907615	AT1G28306.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28305.1); Has 48 Blast hits to 48 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28306.1p  transcript_id AT1G28306.1  protein_id AT1G28306.1p  transcript_id AT1G28306.1  
At1g28307	chr1:009909020	0.0	W/9909020-9909127	AT1G28307.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G28307.1p  transcript_id AT1G28307.1  protein_id AT1G28307.1p  transcript_id AT1G28307.1  
At1g28310	chr1:009912534	0.0	C/9912534-9913469	AT1G28310.1  CDS  gene_syn F3H9.4, F3H9_4  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product Dof-type zinc finger domain-containing protein  note Dof-type zinc finger domain-containing protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT5G02460.1); Has 926 Blast hits to 798 proteins in 76 species: Archae - 0; Bacteria - 20; Metazoa - 164; Fungi - 17; Plants - 618; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT1G28310.1p  transcript_id AT1G28310.1  protein_id AT1G28310.1p  transcript_id AT1G28310.1  
At1g28310	chr1:009913650	0.0	C/9913650-9913685,9912534-9913475	AT1G28310.2  CDS  gene_syn F3H9.4, F3H9_4  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product Dof-type zinc finger domain-containing protein  note Dof-type zinc finger domain-containing protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT5G02460.1); Has 945 Blast hits to 838 proteins in 78 species: Archae - 0; Bacteria - 20; Metazoa - 141; Fungi - 16; Plants - 623; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink).  protein_id AT1G28310.2p  transcript_id AT1G28310.2  protein_id AT1G28310.2p  transcript_id AT1G28310.2  
At1g28320	chr1:009924282	0.0	C/9924282-9924347,9924122-9924168,9923846-9924029,9923703-9923750,9923554-9923613,9923231-9923359,9922970-9923080,9922782-9922885,9922580-9922665,9922394-9922488,9921642-9922308,9921252-9921444,9921020-9921111,9920673-9920920	AT1G28320.1  CDS  gene_syn DEG15, F3H9.3, F3H9_3  gene DEG15  function Mutants in this gene are defective in the processing of pre-glyoxysomal malate dehydrogenase (pre-gMDH) to gMDH.  go_component cellular_component|GO:0005575||ND  go_function endopeptidase activity|GO:0004175|17592111|IMP  product DEG15; endopeptidase  note DEG15; FUNCTIONS IN: endopeptidase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase, trypsin-like serine and cysteine (InterPro:IPR009003); BEST Arabidopsis thaliana protein match is: DEGP1 (DegP protease 1); serine-type endopeptidase/ serine-type peptidase (TAIR:AT3G27925.1); Has 2262 Blast hits to 2191 proteins in 682 species: Archae - 14; Bacteria - 1484; Metazoa - 62; Fungi - 11; Plants - 65; Viruses - 0; Other Eukaryotes - 626 (source: NCBI BLink).  protein_id AT1G28320.1p  transcript_id AT1G28320.1  protein_id AT1G28320.1p  transcript_id AT1G28320.1  
At1g28323	chr1:009928401	0.0	W/9928401-9931731	AT1G28323.1  mRNA_TE_gene  pseudo  gene_syn F3H9.28  note Transposable element gene, copia-like retrotransposon family, has a 1.9e-140 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At1g28327	chr1:009932120	0.0	W/9932120-9932635,9932711-9932818,9932906-9933079,9933169-9933195	AT1G28327.1  CDS  gene_syn F3H9.2, F3H9_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: RING1B (RING 1B); protein binding / zinc ion binding (TAIR:AT1G03770.1); Has 20 Blast hits to 20 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28327.1p  transcript_id AT1G28327.1  protein_id AT1G28327.1p  transcript_id AT1G28327.1  
At1g28330	chr1:009935111	0.0	C/9935111-9935216,9934794-9935019,9934252-9934288	AT1G28330.1  CDS  gene_syn DORMANCY-ASSOCIATED PROTEIN 1, DORMANCY-ASSOCIATED PROTEIN-LIKE 1, DRM1, DYL1, F3H9.1, F3H9_1  gene DYL1  function dormancy-associated protein (DRM1)  go_component cellular_component|GO:0005575||ND  go_process response to sucrose stimulus|GO:0009744|16463203|IEP  go_process response to glucose stimulus|GO:0009749|16463203|IEP  go_process response to fructose stimulus|GO:0009750|16463203|IEP  go_function molecular_function|GO:0003674||ND  product DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1)  note DORMANCY-ASSOCIATED PROTEIN-LIKE 1 (DYL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dormancyauxin associated (InterPro:IPR008406); BEST Arabidopsis thaliana protein match is: dormancy/auxin associated family protein (TAIR:AT2G33830.2); Has 152 Blast hits to 152 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G28330.1p  transcript_id AT1G28330.1  protein_id AT1G28330.1p  transcript_id AT1G28330.1  
At1g28330	chr1:009935111	0.0	C/9935111-9935216,9934794-9935019,9934257-9934288,9934134-9934147	AT1G28330.4  CDS  gene_syn DORMANCY-ASSOCIATED PROTEIN 1, DORMANCY-ASSOCIATED PROTEIN-LIKE 1, DRM1, DYL1, F3H9.1, F3H9_1  gene DYL1  function dormancy-associated protein (DRM1)  go_component cellular_component|GO:0005575||ND  go_process response to sucrose stimulus|GO:0009744|16463203|IEP  go_process response to glucose stimulus|GO:0009749|16463203|IEP  go_process response to fructose stimulus|GO:0009750|16463203|IEP  go_function molecular_function|GO:0003674||ND  product DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1)  note DORMANCY-ASSOCIATED PROTEIN-LIKE 1 (DYL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dormancyauxin associated (InterPro:IPR008406); BEST Arabidopsis thaliana protein match is: dormancy/auxin associated family protein (TAIR:AT2G33830.2).  protein_id AT1G28330.4p  transcript_id AT1G28330.4  protein_id AT1G28330.4p  transcript_id AT1G28330.4  
At1g28330	chr1:009935111	0.0	C/9935111-9935216,9934794-9935019,9934500-9934566	AT1G28330.2  CDS  gene_syn DORMANCY-ASSOCIATED PROTEIN 1, DORMANCY-ASSOCIATED PROTEIN-LIKE 1, DRM1, DYL1, F3H9.1, F3H9_1  gene DYL1  function dormancy-associated protein (DRM1)  go_component cellular_component|GO:0005575||ND  go_process response to sucrose stimulus|GO:0009744|16463203|IEP  go_process response to glucose stimulus|GO:0009749|16463203|IEP  go_process response to fructose stimulus|GO:0009750|16463203|IEP  go_function molecular_function|GO:0003674||ND  product DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1)  note DORMANCY-ASSOCIATED PROTEIN-LIKE 1 (DYL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dormancyauxin associated (InterPro:IPR008406); BEST Arabidopsis thaliana protein match is: dormancy/auxin associated family protein (TAIR:AT2G33830.2); Has 152 Blast hits to 152 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G28330.2p  transcript_id AT1G28330.2  protein_id AT1G28330.2p  transcript_id AT1G28330.2  
At1g28330	chr1:009935111	0.0	C/9935111-9935216,9934794-9935019,9934500-9934566	AT1G28330.3  CDS  gene_syn DORMANCY-ASSOCIATED PROTEIN 1, DORMANCY-ASSOCIATED PROTEIN-LIKE 1, DRM1, DYL1, F3H9.1, F3H9_1  gene DYL1  function dormancy-associated protein (DRM1)  go_component cellular_component|GO:0005575||ND  go_process response to sucrose stimulus|GO:0009744|16463203|IEP  go_process response to glucose stimulus|GO:0009749|16463203|IEP  go_process response to fructose stimulus|GO:0009750|16463203|IEP  go_function molecular_function|GO:0003674||ND  product DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1)  note DORMANCY-ASSOCIATED PROTEIN-LIKE 1 (DYL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dormancyauxin associated (InterPro:IPR008406); BEST Arabidopsis thaliana protein match is: dormancy/auxin associated family protein (TAIR:AT2G33830.2); Has 152 Blast hits to 152 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G28330.3p  transcript_id AT1G28330.3  protein_id AT1G28330.3p  transcript_id AT1G28330.3  
At1g28335	chr1:009937036	0.0	W/9937036-9937096,9937353-9937537	AT1G28335.1  CDS  gene_syn LCR31, Low-molecular-weight cysteine-rich 31  gene LCR31  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR31 (Low-molecular-weight cysteine-rich 31)  note Low-molecular-weight cysteine-rich 31 (LCR31); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); Has 11 Blast hits to 11 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28335.1p  transcript_id AT1G28335.1  protein_id AT1G28335.1p  transcript_id AT1G28335.1  
At1g28340	chr1:009940175	0.0	W/9940175-9940247,9940327-9941382,9941726-9941873,9942044-9942115,9942333-9942404,9942496-9942567,9942663-9942740,9942858-9943039,9943125-9943252	AT1G28340.1  CDS  gene_syn AtRLP4, F3M18.23, F3M18_23, Receptor Like Protein 4  gene AtRLP4  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product AtRLP4 (Receptor Like Protein 4); protein binding  note Receptor Like Protein 4 (AtRLP4); FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein-related (TAIR:AT1G25570.1); Has 46726 Blast hits to 10140 proteins in 530 species: Archae - 12; Bacteria - 1198; Metazoa - 2417; Fungi - 194; Plants - 40627; Viruses - 0; Other Eukaryotes - 2278 (source: NCBI BLink).  protein_id AT1G28340.1p  transcript_id AT1G28340.1  protein_id AT1G28340.1p  transcript_id AT1G28340.1  
At1g28350	chr1:009944483	0.0	W/9944483-9944541,9944864-9945017,9945053-9945420,9945500-9945596,9945773-9945878,9945965-9946047,9946127-9946272,9946447-9946552,9946666-9946725,9946850-9946866,9946985-9947065,9947407-9947560,9947930-9948213,9948294-9948390,9948481-9948586,9948666-9948748,9948831-9948973,9949080-9949185,9949399-9949458,9949557-9949577	AT1G28350.1  CDS  gene_syn F3M18.22, F3M18_22  go_component cytoplasm|GO:0005737||IEA  go_process translation|GO:0006412||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_process tyrosyl-tRNA aminoacylation|GO:0006437||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function tyrosine-tRNA ligase activity|GO:0004831||IEA  go_function ATP binding|GO:0005524||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||ISS  go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS  go_function ATP binding|GO:0005524||ISS  product ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / tyrosine-tRNA ligase  note ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / tyrosine-tRNA ligase; FUNCTIONS IN: tyrosine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: translation, tyrosyl-tRNA aminoacylation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Tyrosyl-tRNA synthetase, class Ib, archaeal/eukaryotic cytosolic (InterPro:IPR015624), Aminoacyl-tRNA synthetase, class Ib (InterPro:IPR002305); BEST Arabidopsis thaliana protein match is: tRNA synthetase class I (W and Y) family protein (TAIR:AT2G33840.1); Has 4633 Blast hits to 3201 proteins in 879 species: Archae - 457; Bacteria - 1594; Metazoa - 549; Fungi - 307; Plants - 158; Viruses - 10; Other Eukaryotes - 1558 (source: NCBI BLink).  protein_id AT1G28350.1p  transcript_id AT1G28350.1  protein_id AT1G28350.1p  transcript_id AT1G28350.1  
At1g28360	chr1:009951934	0.0	W/9951934-9952503	AT1G28360.1  CDS  gene_syn ATERF12, ERF DOMAIN PROTEIN 12, ERF12, F3M18.21, F3M18_21  gene ERF12  function encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ERF12). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.  go_process regulation of transcription, DNA-dependent|GO:0006355|11487705|TAS  go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS  go_function DNA binding|GO:0003677|11487705|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11487705|TAS  go_function transcription factor activity|GO:0003700|9687012|TAS  go_function transcription repressor activity|GO:0016564|11487705|TAS  product ERF12 (ERF DOMAIN PROTEIN 12); DNA binding / transcription factor/ transcription repressor  note ERF DOMAIN PROTEIN 12 (ERF12); FUNCTIONS IN: transcription repressor activity, transcription factor activity, DNA binding; INVOLVED IN: ethylene mediated signaling pathway, regulation of transcription, DNA-dependent; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ERF9 (ERF DOMAIN PROTEIN 9); DNA binding / transcription factor/ transcription repressor (TAIR:AT5G44210.1); Has 3562 Blast hits to 3496 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 3555; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G28360.1p  transcript_id AT1G28360.1  protein_id AT1G28360.1p  transcript_id AT1G28360.1  
At1g28370	chr1:009956351	0.0	C/9956351-9956851	AT1G28370.1  CDS  gene_syn ATERF11, ERF DOMAIN PROTEIN 11, ERF11, F3M18.20, F3M18_20  gene ERF11  function encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.  go_component nucleus|GO:0005634|11487705|IC  go_process regulation of transcription, DNA-dependent|GO:0006355|11487705|TAS  go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS  go_function DNA binding|GO:0003677|11487705|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11487705|TAS  go_function transcription factor activity|GO:0003700|9687012|TAS  go_function transcription repressor activity|GO:0016564|11487705|TAS  product ERF11 (ERF DOMAIN PROTEIN 11); DNA binding / transcription factor/ transcription repressor  note ERF DOMAIN PROTEIN 11 (ERF11); FUNCTIONS IN: transcription repressor activity, transcription factor activity, DNA binding; INVOLVED IN: ethylene mediated signaling pathway, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4); DNA binding / protein binding / transcription factor/ transcription repressor (TAIR:AT3G15210.1); Has 3957 Blast hits to 3723 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3949; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G28370.1p  transcript_id AT1G28370.1  protein_id AT1G28370.1p  transcript_id AT1G28370.1  
At1g28375	chr1:009961155	0.0	W/9961155-9961463	AT1G28375.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28375.1p  transcript_id AT1G28375.1  protein_id AT1G28375.1p  transcript_id AT1G28375.1  
At1g28380	chr1:009963696	0.0	W/9963696-9963968,9964064-9964302,9964393-9964594,9964683-9964763,9964847-9965030,9965115-9965281,9965368-9966060	AT1G28380.1  CDS  gene_syn F3M18.18, F3M18_18, NSL1, necrotic spotted lesions 1  gene NSL1  function This gene is predicted to encode a protein involved in negatively regulating salicylic acid-related defense responses and cell death programs. nsl1 mutants develop necrotic lesions spontaneously and show other features of a defense response, such as higher levels of SA and disease resistance-related transcripts, in the absence of a biotic stimulus. The NSL1 protein is predicted to have a MACPF domain, found in proteins that form a transmembrane pore in mammalian immune responses. NSL1 transcript levels do not appear to change in response to biotic stresses, but are elevated by cycloheximide in seedlings, and by sodium chloride in roots.  go_component cellular_component|GO:0005575||ND  go_process plant-type hypersensitive response|GO:0009626|16900325|IMP  go_process response to salt stress|GO:0009651|16900325|TAS  go_process regulation of salicylic acid metabolic process|GO:0010337|16900325|IMP  go_process callose deposition during defense response|GO:0052542|16900325|IMP  go_function molecular_function|GO:0003674||ND  product NSL1 (necrotic spotted lesions 1)  note necrotic spotted lesions 1 (NSL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress, regulation of salicylic acid metabolic process, callose deposition during defense response, plant-type hypersensitive response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Membrane attack complex component/perforin/complement C9 (InterPro:IPR001862); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24290.2); Has 106 Blast hits to 105 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28380.1p  transcript_id AT1G28380.1  protein_id AT1G28380.1p  transcript_id AT1G28380.1  
At1g28390	chr1:009966814	0.0	C/9966814-9968226	AT1G28390.1  CDS  gene_syn F3M18.17, F3M18_17  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G51990.1); Has 73028 Blast hits to 72345 proteins in 1845 species: Archae - 34; Bacteria - 6252; Metazoa - 31459; Fungi - 5628; Plants - 17207; Viruses - 316; Other Eukaryotes - 12132 (source: NCBI BLink).  protein_id AT1G28390.1p  transcript_id AT1G28390.1  protein_id AT1G28390.1p  transcript_id AT1G28390.1  
At1g28395	chr1:009971282	0.0	C/9971282-9971433,9971073-9971188,9969817-9969836	AT1G28395.4  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1); Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28395.4p  transcript_id AT1G28395.4  protein_id AT1G28395.4p  transcript_id AT1G28395.4  
At1g28395	chr1:009971282	0.0	C/9971282-9971433,9971073-9971188,9970134-9970153	AT1G28395.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 65 Blast hits to 65 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28395.1p  transcript_id AT1G28395.1  protein_id AT1G28395.1p  transcript_id AT1G28395.1  
At1g28395	chr1:009971282	0.0	C/9971282-9971433,9971073-9971188,9970134-9970153	AT1G28395.2  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 65 Blast hits to 65 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28395.2p  transcript_id AT1G28395.2  protein_id AT1G28395.2p  transcript_id AT1G28395.2  
At1g28395	chr1:009971282	0.0	C/9971282-9971433,9971073-9971188,9970134-9970153	AT1G28395.3  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 65 Blast hits to 65 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28395.3p  transcript_id AT1G28395.3  protein_id AT1G28395.3p  transcript_id AT1G28395.3  
At1g28400	chr1:009972732	0.0	C/9972732-9973739	AT1G28400.1  CDS  gene_syn F3M18.16, F3M18_16  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33850.1); Has 44658 Blast hits to 17636 proteins in 467 species: Archae - 50; Bacteria - 837; Metazoa - 1245; Fungi - 895; Plants - 135; Viruses - 63; Other Eukaryotes - 41433 (source: NCBI BLink).  protein_id AT1G28400.1p  transcript_id AT1G28400.1  protein_id AT1G28400.1p  transcript_id AT1G28400.1  
At1g28410	chr1:009978942	0.0	C/9978942-9979080,9978688-9978815,9978121-9978168,9977857-9977970,9977366-9977416,9977194-9977250,9976918-9977076,9976751-9976831,9976596-9976652	AT1G28410.1  CDS  gene_syn F3M18.15, F3M18_15  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT4G31340.2); Has 325 Blast hits to 311 proteins in 62 species: Archae - 4; Bacteria - 12; Metazoa - 199; Fungi - 2; Plants - 61; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G28410.1p  transcript_id AT1G28410.1  protein_id AT1G28410.1p  transcript_id AT1G28410.1  
At1g28420	chr1:009979936	0.0	W/9979936-9980113,9980195-9980674,9980791-9980861,9981175-9981537,9981630-9981719,9981834-9981998,9982125-9982347,9982780-9982880,9983050-9983136,9983239-9983391,9983484-9983639,9983817-9984026,9984114-9984761,9984861-9985373,9985500-9986057,9986138-9986242,9986337-9986579,9986687-9987460	AT1G28420.1  CDS  gene_syn F3M18.14, F3M18_14, HB-1, homeobox-1  gene HB-1  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product HB-1 (homeobox-1); transcription factor  note homeobox-1 (HB-1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DDT superfamily (InterPro:IPR018501), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), DDT subgroup (InterPro:IPR018500), DDT family (InterPro:IPR004022), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox transcription factor, putative (TAIR:AT5G44180.1); Has 30280 Blast hits to 21821 proteins in 1085 species: Archae - 44; Bacteria - 1335; Metazoa - 18653; Fungi - 1932; Plants - 937; Viruses - 78; Other Eukaryotes - 7301 (source: NCBI BLink).  protein_id AT1G28420.1p  transcript_id AT1G28420.1  protein_id AT1G28420.1p  transcript_id AT1G28420.1  
At1g28430	chr1:009993731	0.0	C/9993731-9994642,9992986-9993639	AT1G28430.1  CDS  gene_syn CYP705A24, F3M18.13, F3M18_13  gene CYP705A24  function member of CYP705A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP705A24; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP705A24; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP705A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G15330.1); Has 23030 Blast hits to 22938 proteins in 1226 species: Archae - 21; Bacteria - 1777; Metazoa - 10292; Fungi - 4557; Plants - 5572; Viruses - 6; Other Eukaryotes - 805 (source: NCBI BLink).  protein_id AT1G28430.1p  transcript_id AT1G28430.1  protein_id AT1G28430.1p  transcript_id AT1G28430.1  
At1g28440	chr1:009996914	0.0	W/9996914-9999500,9999768-10000171	AT1G28440.1  CDS  gene_syn F3M18.12, F3M18_12, HAESA-Like 1, HSL1  gene HSL1  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product HSL1 (HAESA-Like 1); ATP binding / kinase/ protein serine/threonine kinase  note HAESA-Like 1 (HSL1); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: HAE (HAESA); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT4G28490.1); Has 146860 Blast hits to 94798 proteins in 2852 species: Archae - 79; Bacteria - 12502; Metazoa - 57487; Fungi - 6803; Plants - 50326; Viruses - 373; Other Eukaryotes - 19290 (source: NCBI BLink).  protein_id AT1G28440.1p  transcript_id AT1G28440.1  protein_id AT1G28440.1p  transcript_id AT1G28440.1  
At1g28447	chr1:010003150	0.0	W/10003150-10003540	AT1G28447.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G18880; glucose transmembrane transporter  
At1g28450	chr1:010003966	0.0	W/10003966-10004523	AT1G28450.1  CDS  gene_syn AGAMOUS-LIKE 58, AGL58, F3M18.11, F3M18_11  gene AGL58  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product AGL58 (AGAMOUS-LIKE 58); DNA binding / transcription factor  note AGAMOUS-LIKE 58 (AGL58); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL59 (AGAMOUS-LIKE 59); DNA binding / transcription factor (TAIR:AT1G28460.1); Has 3415 Blast hits to 3415 proteins in 462 species: Archae - 0; Bacteria - 0; Metazoa - 463; Fungi - 144; Plants - 2775; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT1G28450.1p  transcript_id AT1G28450.1  protein_id AT1G28450.1p  transcript_id AT1G28450.1  
At1g28455	chr1:010005230	0.0	W/10005230-10005700	AT1G28455.1  pseudogenic_transcript  pseudo  gene_syn F3M18.31  note pseudogene, similar to SAE1-S9-protein, blastp match of 46% identity and 6.4e-07 P-value to GP|4760708|dbj|BAA77394.1||AB012866 SAE1-S9-protein {Brassica rapa}  
At1g28460	chr1:010006230	0.0	W/10006230-10006778	AT1G28460.1  CDS  gene_syn AGAMOUS-LIKE 59, AGL59, F3M18.10, F3M18_10  gene AGL59  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product AGL59 (AGAMOUS-LIKE 59); DNA binding / transcription factor  note AGAMOUS-LIKE 59 (AGL59); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL58 (AGAMOUS-LIKE 58); DNA binding / transcription factor (TAIR:AT1G28450.1); Has 3754 Blast hits to 3753 proteins in 514 species: Archae - 0; Bacteria - 0; Metazoa - 533; Fungi - 194; Plants - 2983; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT1G28460.1p  transcript_id AT1G28460.1  protein_id AT1G28460.1p  transcript_id AT1G28460.1  
At1g28465	chr1:010007521	0.0	W/10007521-10008087	AT1G28465.1  mRNA_TE_gene  pseudo  gene_syn F3M18.30  note Transposable element gene, pseudogene, hypothetical protein  
At1g28470	chr1:010010259	0.0	W/10010259-10010459,10010550-10010742,10011317-10011867	AT1G28470.1  CDS  gene_syn ANAC010, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 10, F3M18.9, F3M18_9, SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 3, SND3  gene ANAC010  go_component nucleus|GO:0005634|18952777|IDA  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|18952777|IDA  product ANAC010 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 10); transcription activator/ transcription factor  note ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 10 (ANAC010); FUNCTIONS IN: transcription factor activity, transcription activator activity; INVOLVED IN: multicellular organismal development, regulation of secondary cell wall thickening; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC073 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 73); transcription activator/ transcription factor (TAIR:AT4G28500.1); Has 1240 Blast hits to 1238 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1240; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28470.1p  transcript_id AT1G28470.1  protein_id AT1G28470.1p  transcript_id AT1G28470.1  
At1g28480	chr1:010013634	0.0	C/10013634-10014047	AT1G28480.1  CDS  gene_syn GRX480  gene GRX480  function Encodes GRX480, a member of the glutaredoxin family that regulates protein redox state. GRX480 interacts with TGA factors and suppresses JA-responsive PDF1.2 transcription. GRX480 transcription is SA-inducible and requires NPR1. Maybe involved in SA/JA cross-talk.  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  go_component cellular_component|GO:0005575||ND  go_process response to salicylic acid stimulus|GO:0009751|17397508|IEP  go_process salicylic acid mediated signaling pathway|GO:0009863|17397508|IMP  go_process jasmonic acid mediated signaling pathway|GO:0009867|17397508|IMP  product GRX480; electron carrier/ protein disulfide oxidoreductase  note GRX480; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: salicylic acid mediated signaling pathway, jasmonic acid mediated signaling pathway, response to salicylic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutaredoxin active site (InterPro:IPR011767), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin family protein (TAIR:AT1G03850.2); Has 456 Blast hits to 455 proteins in 65 species: Archae - 0; Bacteria - 6; Metazoa - 42; Fungi - 12; Plants - 389; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G28480.1p  transcript_id AT1G28480.1  protein_id AT1G28480.1p  transcript_id AT1G28480.1  
At1g28490	chr1:010016433	0.0	W/10016433-10016486,10016567-10016680,10016869-10016982,10017079-10017266,10017412-10017502,10017588-10017653,10017732-10017842	AT1G28490.1  CDS  gene_syn ATSYP61, F3M18.7, F3M18_7, OSM1, SYNTAXIN OF PLANTS 61, SYP61  gene SYP61  function Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.  go_component trans-Golgi network transport vesicle|GO:0030140|11115874|ISS  go_process intracellular protein transport|GO:0006886|11115874|ISS  go_process membrane fusion|GO:0006944|11115874|ISS  go_function SNAP receptor activity|GO:0005484|11115874|TAS  product SYP61 (SYNTAXIN OF PLANTS 61); SNAP receptor  note SYNTAXIN OF PLANTS 61 (SYP61); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion, intracellular protein transport; LOCATED IN: trans-Golgi network transport vesicle; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), t-SNARE (InterPro:IPR010989), Syntaxin 6, N-terminal (InterPro:IPR015260); BEST Arabidopsis thaliana protein match is: protein binding (TAIR:AT1G27700.1); Has 663 Blast hits to 632 proteins in 153 species: Archae - 0; Bacteria - 2; Metazoa - 267; Fungi - 162; Plants - 131; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT1G28490.1p  transcript_id AT1G28490.1  protein_id AT1G28490.1p  transcript_id AT1G28490.1  
At1g28490	chr1:010016634	0.0	W/10016634-10016680,10016865-10016982,10017079-10017266,10017412-10017502,10017588-10017653,10017732-10017842	AT1G28490.2  CDS  gene_syn ATSYP61, F3M18.7, F3M18_7, OSM1, SYNTAXIN OF PLANTS 61, SYP61  gene SYP61  function Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.  go_component trans-Golgi network transport vesicle|GO:0030140|11115874|ISS  go_process intracellular protein transport|GO:0006886|11115874|ISS  go_process membrane fusion|GO:0006944|11115874|ISS  go_function SNAP receptor activity|GO:0005484|11115874|TAS  product SYP61 (SYNTAXIN OF PLANTS 61); SNAP receptor  note SYNTAXIN OF PLANTS 61 (SYP61); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion, intracellular protein transport; LOCATED IN: trans-Golgi network transport vesicle; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin 6, N-terminal (InterPro:IPR015260); Has 561 Blast hits to 561 proteins in 142 species: Archae - 0; Bacteria - 2; Metazoa - 218; Fungi - 156; Plants - 96; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT1G28490.2p  transcript_id AT1G28490.2  protein_id AT1G28490.2p  transcript_id AT1G28490.2  
At1g28500	chr1:010018691	0.0	W/10018691-10018777,10019020-10019163,10019335-10019536,10019626-10019759,10019846-10019932,10020024-10020350	AT1G28500.1  CDS  gene_syn F3M18.6, F3M18_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27860.1); Has 78 Blast hits to 77 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28500.1p  transcript_id AT1G28500.1  protein_id AT1G28500.1p  transcript_id AT1G28500.1  
At1g28510	chr1:010024036	0.0	W/10024036-10024164,10024371-10024505,10025148-10025234,10025775-10025939	AT1G28510.1  CDS  gene_syn F3M18.5, F3M18_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Optic atrophy 3-like (InterPro:IPR010754); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58150.1); Has 279 Blast hits to 279 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 133; Fungi - 74; Plants - 40; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT1G28510.1p  transcript_id AT1G28510.1  protein_id AT1G28510.1p  transcript_id AT1G28510.1  
At1g28520	chr1:010029713	0.0	W/10029713-10029943,10030064-10030213,10030311-10030827,10030917-10031479	AT1G28520.1  CDS  gene_syn ATVOZ1, F3M18.4, F3M18_4, VASCULAR PLANT ONE ZINC FINGER PROTEIN, VOZ1  gene VOZ1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transcription activator activity|GO:0016563|15295067|IDA  product VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN); transcription activator  note VASCULAR PLANT ONE ZINC FINGER PROTEIN (VOZ1); FUNCTIONS IN: transcription activator activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: VOZ2 (VASCULAR PLANT ONE ZINC FINGER PROTEIN 2); transcription activator (TAIR:AT2G42400.1); Has 45 Blast hits to 37 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28520.1p  transcript_id AT1G28520.1  protein_id AT1G28520.1p  transcript_id AT1G28520.1  
At1g28520	chr1:010029713	0.0	W/10029713-10029943,10030064-10030213,10030311-10030827,10030917-10031479	AT1G28520.2  CDS  gene_syn ATVOZ1, F3M18.4, F3M18_4, VASCULAR PLANT ONE ZINC FINGER PROTEIN, VOZ1  gene VOZ1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transcription activator activity|GO:0016563|15295067|IDA  product VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN); transcription activator  note VASCULAR PLANT ONE ZINC FINGER PROTEIN (VOZ1); FUNCTIONS IN: transcription activator activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: VOZ2 (VASCULAR PLANT ONE ZINC FINGER PROTEIN 2); transcription activator (TAIR:AT2G42400.1); Has 45 Blast hits to 37 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28520.2p  transcript_id AT1G28520.2  protein_id AT1G28520.2p  transcript_id AT1G28520.2  
At1g28530	chr1:010035113	0.0	C/10035113-10035496,10034822-10035025,10034236-10034721,10033674-10033784,10033134-10033319,10032549-10032779,10032346-10032466,10032127-10032245	AT1G28530.2  CDS  gene_syn F3M18.3  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; Has 14 Blast hits to 14 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28530.2p  transcript_id AT1G28530.2  protein_id AT1G28530.2p  transcript_id AT1G28530.2  
At1g28530	chr1:010035113	0.0	C/10035113-10035496,10034822-10035025,10034236-10034724,10033674-10033784,10033134-10033319,10032549-10032779,10032346-10032466,10032127-10032245	AT1G28530.1  CDS  gene_syn F3M18.3  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; Has 14 Blast hits to 14 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28530.1p  transcript_id AT1G28530.1  protein_id AT1G28530.1p  transcript_id AT1G28530.1  
At1g28540	chr1:010035696	0.0	W/10035696-10036007	AT1G28540.1  CDS  gene_syn F3M18.29  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 18 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28540.1p  transcript_id AT1G28540.1  protein_id AT1G28540.1p  transcript_id AT1G28540.1  
At1g28550	chr1:010037478	0.0	C/10037478-10037698,10036966-10037401	AT1G28550.1  CDS  gene_syn Arabidopsis Rab GTPase homolog A1i, AtRABA1i, F3M18.2  gene AtRABA1i  go_component plasma membrane|GO:0005886|17644812|IDA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product AtRABA1i (Arabidopsis Rab GTPase homolog A1i); GTP binding  note Arabidopsis Rab GTPase homolog A1i (AtRABA1i); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, flower, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: ArRABA1h (Arabidopsis Rab GTPase homolog A1h); GTP binding (TAIR:AT2G33870.1); Has 21308 Blast hits to 21276 proteins in 590 species: Archae - 15; Bacteria - 91; Metazoa - 11783; Fungi - 2744; Plants - 1831; Viruses - 19; Other Eukaryotes - 4825 (source: NCBI BLink).  protein_id AT1G28550.1p  transcript_id AT1G28550.1  protein_id AT1G28550.1p  transcript_id AT1G28550.1  
At1g28560	chr1:010040359	0.0	C/10040359-10040382,10040205-10040257,10039775-10039889,10039523-10039611,10039346-10039436,10039147-10039239,10038927-10039052,10038574-10038834,10038197-10038472	AT1G28560.1  CDS  gene_syn F3M18.1, SHOOT REDIFFERENTIATION DEFECTIVE 2, SRD2  gene SRD2  function Encodes a protein similar to human SNAP50. Mutants display different temperature sensitivities in the dedifferentiation of cells from different organs. Mutation inhibits the dedifferentiation-associated accumulation of U-snRNAs and some other small RNA species encoded by independent-type genes carrying the USE and TATA box. Required for the elevation of cell proliferation competence in hypocotyl dedifferentiation.  go_component nucleus|GO:0005634|16098103|IDA  go_process snRNA transcription|GO:0009301|16098103|IMP  go_process snRNA transcription|GO:0009301||ISS  go_process organ morphogenesis|GO:0009887|12232244|IMP  go_function DNA binding|GO:0003677||ISS  product SRD2 (SHOOT REDIFFERENTIATION DEFECTIVE 2); DNA binding  note SHOOT REDIFFERENTIATION DEFECTIVE 2 (SRD2); FUNCTIONS IN: DNA binding; INVOLVED IN: snRNA transcription, organ morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 178 Blast hits to 178 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 109; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT1G28560.1p  transcript_id AT1G28560.1  protein_id AT1G28560.1p  transcript_id AT1G28560.1  
At1g28560	chr1:010040359	0.0	C/10040359-10040382,10040205-10040257,10039775-10039889,10039523-10039611,10039346-10039436,10039147-10039239,10038927-10039052,10038574-10038834,10038197-10038472	AT1G28560.2  CDS  gene_syn F3M18.1, SHOOT REDIFFERENTIATION DEFECTIVE 2, SRD2  gene SRD2  function Encodes a protein similar to human SNAP50. Mutants display different temperature sensitivities in the dedifferentiation of cells from different organs. Mutation inhibits the dedifferentiation-associated accumulation of U-snRNAs and some other small RNA species encoded by independent-type genes carrying the USE and TATA box. Required for the elevation of cell proliferation competence in hypocotyl dedifferentiation.  go_component nucleus|GO:0005634|16098103|IDA  go_process snRNA transcription|GO:0009301|16098103|IMP  go_process snRNA transcription|GO:0009301||ISS  go_process organ morphogenesis|GO:0009887|12232244|IMP  go_function DNA binding|GO:0003677||ISS  product SRD2 (SHOOT REDIFFERENTIATION DEFECTIVE 2); DNA binding  note SHOOT REDIFFERENTIATION DEFECTIVE 2 (SRD2); FUNCTIONS IN: DNA binding; INVOLVED IN: snRNA transcription, organ morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 178 Blast hits to 178 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 109; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT1G28560.2p  transcript_id AT1G28560.2  protein_id AT1G28560.2p  transcript_id AT1G28560.2  
At1g28570	chr1:010043851	0.0	C/10043851-10044112,10042524-10042672,10042179-10042455,10041838-10042103	AT1G28570.2  CDS  gene_syn F1K23.19, F1K23_19  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298||ISS  product GDSL-motif lipase, putative  note GDSL-motif lipase, putative; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase, putative (TAIR:AT1G31550.2); Has 2057 Blast hits to 1513 proteins in 92 species: Archae - 0; Bacteria - 105; Metazoa - 2; Fungi - 0; Plants - 1948; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G28570.2p  transcript_id AT1G28570.2  protein_id AT1G28570.2p  transcript_id AT1G28570.2  
At1g28570	chr1:010043851	0.0	C/10043851-10044112,10043048-10043263,10042524-10042672,10042179-10042455,10041838-10042103	AT1G28570.1  CDS  gene_syn F1K23.19, F1K23_19  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298||ISS  product GDSL-motif lipase, putative  note GDSL-motif lipase, putative; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase, putative (TAIR:AT1G28580.1); Has 1842 Blast hits to 1809 proteins in 166 species: Archae - 0; Bacteria - 247; Metazoa - 1; Fungi - 4; Plants - 1579; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G28570.1p  transcript_id AT1G28570.1  protein_id AT1G28570.1p  transcript_id AT1G28570.1  
At1g28580	chr1:010045631	0.0	C/10045631-10045874,10045300-10045448,10044948-10045224,10044603-10044862	AT1G28580.2  CDS  gene_syn F1K23.18, F1K23_18  go_component vacuole|GO:0005773|15539469|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298||ISS  product GDSL-motif lipase, putative  note GDSL-motif lipase, putative; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase, putative (TAIR:AT1G28570.1); Has 1576 Blast hits to 1556 proteins in 93 species: Archae - 0; Bacteria - 83; Metazoa - 1; Fungi - 0; Plants - 1489; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G28580.2p  transcript_id AT1G28580.2  protein_id AT1G28580.2p  transcript_id AT1G28580.2  
At1g28580	chr1:010046109	0.0	C/10046109-10046379,10045631-10045846,10045300-10045448,10044948-10045224,10044603-10044862	AT1G28580.1  CDS  gene_syn F1K23.18, F1K23_18  go_component vacuole|GO:0005773|15539469|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298||ISS  product GDSL-motif lipase, putative  note GDSL-motif lipase, putative; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase, putative (TAIR:AT1G28570.1); Has 1868 Blast hits to 1834 proteins in 164 species: Archae - 0; Bacteria - 265; Metazoa - 1; Fungi - 5; Plants - 1584; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G28580.1p  transcript_id AT1G28580.1  protein_id AT1G28580.1p  transcript_id AT1G28580.1  
At1g28590	chr1:010049033	0.0	C/10049033-10049300,10048590-10048805,10048307-10048455,10047903-10048179,10047509-10047810	AT1G28590.1  CDS  gene_syn F1K23.17, F1K23_17  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product lipase, putative  note lipase, putative; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: lipase, putative (TAIR:AT2G27360.1); Has 1785 Blast hits to 1753 proteins in 142 species: Archae - 0; Bacteria - 199; Metazoa - 1; Fungi - 4; Plants - 1576; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G28590.1p  transcript_id AT1G28590.1  protein_id AT1G28590.1p  transcript_id AT1G28590.1  
At1g28591	chr1:010049485	0.0	C/10049485-10049857	AT1G28591.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G28610; GDSL-motif lipase, putative  
At1g28600	chr1:010052821	0.0	C/10052821-10053073,10052254-10052466,10052019-10052167,10051604-10051885	AT1G28600.2  CDS  gene_syn F1K23.28, F1K23_28  go_component cell wall|GO:0005618|15593128|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product lipase, putative  note lipase, putative; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase, putative (TAIR:AT1G28610.2); Has 1518 Blast hits to 1499 proteins in 62 species: Archae - 0; Bacteria - 45; Metazoa - 1; Fungi - 0; Plants - 1472; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28600.2p  transcript_id AT1G28600.2  protein_id AT1G28600.2p  transcript_id AT1G28600.2  
At1g28600	chr1:010052821	0.0	C/10052821-10053073,10052254-10052466,10052019-10052167,10051609-10051885,10051228-10051517	AT1G28600.1  CDS  gene_syn F1K23.28, F1K23_28  go_component cell wall|GO:0005618|15593128|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product lipase, putative  note lipase, putative; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase, putative (TAIR:AT1G28610.2); Has 1708 Blast hits to 1677 proteins in 109 species: Archae - 0; Bacteria - 131; Metazoa - 1; Fungi - 0; Plants - 1573; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G28600.1p  transcript_id AT1G28600.1  protein_id AT1G28600.1p  transcript_id AT1G28600.1  
At1g28610	chr1:010055413	0.0	C/10055413-10055665,10054866-10055081,10054477-10054760	AT1G28610.1  CDS  gene_syn F1K23.16, F1K23_16  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298||ISS  product GDSL-motif lipase, putative  note GDSL-motif lipase, putative; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: lipase, putative (TAIR:AT1G28600.2); Has 1392 Blast hits to 1383 proteins in 53 species: Archae - 0; Bacteria - 18; Metazoa - 1; Fungi - 0; Plants - 1373; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28610.1p  transcript_id AT1G28610.1  protein_id AT1G28610.1p  transcript_id AT1G28610.1  
At1g28610	chr1:010055413	0.0	C/10055413-10055665,10054866-10055081,10054615-10054760,10054234-10054510,10053877-10054136	AT1G28610.2  CDS  gene_syn F1K23.16, F1K23_16  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298||ISS  product GDSL-motif lipase, putative  note GDSL-motif lipase, putative; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: lipase, putative (TAIR:AT2G27360.1); Has 1800 Blast hits to 1773 proteins in 147 species: Archae - 0; Bacteria - 219; Metazoa - 1; Fungi - 4; Plants - 1572; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G28610.2p  transcript_id AT1G28610.2  protein_id AT1G28610.2p  transcript_id AT1G28610.2  
At1g28620	chr1:010056193	0.0	C/10056193-10057819	AT1G28620.1  pseudogenic_transcript  pseudo  gene_syn F1K23.15  note pseudogene, lipase, similar to lipase Arab-1 GB:S68410 GI:2129636 (Arabidopsis thaliana); blastp match of 44% identity and 1.2e-48 P-value to GP|7523500|dbj|BAA94228.1||AP001633 unnamed protein product {Oryza sativa (japonica cultivar-group)}  
At1g28630	chr1:010062689	0.0	C/10062689-10062874,10062439-10062543,10062186-10062299,10061916-10062032,10061668-10061799,10061471-10061583,10061223-10061373	AT1G28630.5  CDS  gene_syn F1K23.14, F1K23_14  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77960.1); Has 424 Blast hits to 342 proteins in 45 species: Archae - 0; Bacteria - 4; Metazoa - 46; Fungi - 22; Plants - 46; Viruses - 0; Other Eukaryotes - 306 (source: NCBI BLink).  protein_id AT1G28630.5p  transcript_id AT1G28630.5  protein_id AT1G28630.5p  transcript_id AT1G28630.5  
At1g28630	chr1:010063375	0.0	C/10063375-10063452,10062877-10063032,10062689-10062802,10062439-10062540,10061916-10062032,10061668-10061799,10061471-10061583,10061223-10061373	AT1G28630.2  CDS  gene_syn F1K23.14, F1K23_14  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77960.1); Has 367 Blast hits to 330 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 32; Fungi - 29; Plants - 46; Viruses - 0; Other Eukaryotes - 260 (source: NCBI BLink).  protein_id AT1G28630.2p  transcript_id AT1G28630.2  protein_id AT1G28630.2p  transcript_id AT1G28630.2  
At1g28630	chr1:010063375	0.0	C/10063375-10063452,10062877-10063032,10062689-10062802,10062439-10062540,10062186-10062299,10061916-10062032,10061668-10061799,10061471-10061583,10061227-10061373,10060443-10060511,10060187-10060255,10059994-10060062,10059758-10059826,10059512-10059626,10059245-10059325,10059104-10059162,10058790-10058877	AT1G28630.4  CDS  gene_syn F1K23.14, F1K23_14  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77960.1); Has 1247 Blast hits to 997 proteins in 121 species: Archae - 0; Bacteria - 18; Metazoa - 277; Fungi - 126; Plants - 104; Viruses - 0; Other Eukaryotes - 722 (source: NCBI BLink).  protein_id AT1G28630.4p  transcript_id AT1G28630.4  protein_id AT1G28630.4p  transcript_id AT1G28630.4  
At1g28630	chr1:010063375	0.0	C/10063375-10063452,10062877-10063032,10062689-10062802,10062439-10062543,10062186-10062299,10061916-10062032,10061668-10061799,10061471-10061565,10061223-10061373	AT1G28630.3  CDS  gene_syn F1K23.14, F1K23_14  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77960.1); Has 588 Blast hits to 501 proteins in 67 species: Archae - 0; Bacteria - 2; Metazoa - 88; Fungi - 52; Plants - 70; Viruses - 0; Other Eukaryotes - 376 (source: NCBI BLink).  protein_id AT1G28630.3p  transcript_id AT1G28630.3  protein_id AT1G28630.3p  transcript_id AT1G28630.3  
At1g28630	chr1:010063375	0.0	C/10063375-10063452,10062877-10063032,10062689-10062802,10062439-10062543,10062186-10062299,10061916-10062032,10061668-10061799,10061471-10061583,10061223-10061373	AT1G28630.1  CDS  gene_syn F1K23.14, F1K23_14  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77960.1); Has 628 Blast hits to 498 proteins in 74 species: Archae - 0; Bacteria - 6; Metazoa - 96; Fungi - 41; Plants - 75; Viruses - 0; Other Eukaryotes - 410 (source: NCBI BLink).  protein_id AT1G28630.1p  transcript_id AT1G28630.1  protein_id AT1G28630.1p  transcript_id AT1G28630.1  
At1g28640	chr1:010068845	0.0	C/10068845-10069109,10068501-10068719,10068257-10068405,10067902-10068178,10067563-10067825	AT1G28640.1  CDS  gene_syn F1K23.25, F1K23_25  go_component endomembrane system|GO:0012505||IEA  go_process glycerol biosynthetic process|GO:0006114||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298||ISS  product GDSL-motif lipase, putative  note GDSL-motif lipase, putative; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: glycerol biosynthetic process, lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: ARAB-1; carboxylesterase/ hydrolase, acting on ester bonds (TAIR:AT1G28670.1); Has 1790 Blast hits to 1762 proteins in 141 species: Archae - 0; Bacteria - 210; Metazoa - 1; Fungi - 6; Plants - 1570; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G28640.1p  transcript_id AT1G28640.1  protein_id AT1G28640.1p  transcript_id AT1G28640.1  
At1g28650	chr1:010070812	0.0	C/10070812-10071082,10070461-10070679,10070234-10070382,10069880-10070153,10069547-10069791	AT1G28650.1  CDS  gene_syn F1K23.27, F1K23_27  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product lipase, putative  note lipase, putative; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: ARAB-1; carboxylesterase/ hydrolase, acting on ester bonds (TAIR:AT1G28670.1); Has 1759 Blast hits to 1730 proteins in 129 species: Archae - 0; Bacteria - 177; Metazoa - 1; Fungi - 2; Plants - 1574; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G28650.1p  transcript_id AT1G28650.1  protein_id AT1G28650.1p  transcript_id AT1G28650.1  
At1g28660	chr1:010073107	0.0	C/10073107-10073371,10072754-10072972,10072530-10072675,10072181-10072457,10071856-10072100	AT1G28660.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product lipase, putative  note lipase, putative; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: ARAB-1; carboxylesterase/ hydrolase, acting on ester bonds (TAIR:AT1G28670.1); Has 1745 Blast hits to 1718 proteins in 131 species: Archae - 0; Bacteria - 168; Metazoa - 1; Fungi - 2; Plants - 1562; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G28660.1p  transcript_id AT1G28660.1  protein_id AT1G28660.1p  transcript_id AT1G28660.1  
At1g28660	chr1:010073107	0.0	C/10073107-10073371,10072754-10072972,10072533-10072675,10072181-10072457,10071856-10072100	AT1G28660.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product lipase, putative  note lipase, putative; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: ARAB-1; carboxylesterase/ hydrolase, acting on ester bonds (TAIR:AT1G28670.1); Has 1726 Blast hits to 1699 proteins in 126 species: Archae - 0; Bacteria - 158; Metazoa - 1; Fungi - 2; Plants - 1561; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G28660.2p  transcript_id AT1G28660.2  protein_id AT1G28660.2p  transcript_id AT1G28660.2  
At1g28670	chr1:010075986	0.0	C/10075986-10076250,10075640-10075858,10075360-10075508,10074993-10075269,10074669-10074913	AT1G28670.1  CDS  gene_syn ARAB-1  gene ARAB-1  function Arabidopsis thaliana lipase  go_component endomembrane system|GO:0012505||IEA  go_process glycerol biosynthetic process|GO:0006114||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product ARAB-1; carboxylesterase/ hydrolase, acting on ester bonds  note ARAB-1; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: glycerol biosynthetic process, lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: lipase, putative (TAIR:AT1G28660.1); Has 1712 Blast hits to 1683 proteins in 124 species: Archae - 0; Bacteria - 167; Metazoa - 1; Fungi - 0; Plants - 1541; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G28670.1p  transcript_id AT1G28670.1  protein_id AT1G28670.1p  transcript_id AT1G28670.1  
At1g28685	chr1:010077923	0.0	C/10077923-10079643	AT1G28685.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G28680  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G28685.1  
At1g28680	chr1:010078222	0.0	W/10078222-10079033,10079120-10079397,10079498-10079763	AT1G28680.1  CDS  gene_syn F1K23.12, F1K23_12  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT5G07080.1); Has 1278 Blast hits to 1274 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 45; Plants - 1233; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28680.1p  transcript_id AT1G28680.1  protein_id AT1G28680.1p  transcript_id AT1G28680.1  
At1g28690	chr1:010080042	0.0	C/10080042-10081604	AT1G28690.1  CDS  gene_syn F1K23.11, F1K23_11  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G14820.1); Has 14168 Blast hits to 5004 proteins in 144 species: Archae - 1; Bacteria - 4; Metazoa - 115; Fungi - 67; Plants - 13637; Viruses - 0; Other Eukaryotes - 344 (source: NCBI BLink).  protein_id AT1G28690.1p  transcript_id AT1G28690.1  protein_id AT1G28690.1p  transcript_id AT1G28690.1  
At1g28695	chr1:010082950	0.0	C/10082950-10083054,10082475-10082867,10081894-10082385	AT1G28695.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28700.1); Has 209 Blast hits to 206 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 194; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G28695.1p  transcript_id AT1G28695.1  protein_id AT1G28695.1p  transcript_id AT1G28695.1  
At1g28700	chr1:010084824	0.0	C/10084824-10084958,10084349-10084738,10083773-10084264	AT1G28700.1  CDS  gene_syn F1K23.10, F1K23_10  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28710.1); Has 179 Blast hits to 175 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 168; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G28700.1p  transcript_id AT1G28700.1  protein_id AT1G28700.1p  transcript_id AT1G28700.1  
At1g28710	chr1:010087431	0.0	C/10087431-10087766,10086850-10087350	AT1G28710.2  CDS  gene_syn F1K23.9, F1K23_9  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28700.1).  protein_id AT1G28710.2p  transcript_id AT1G28710.2  protein_id AT1G28710.2p  transcript_id AT1G28710.2  
At1g28710	chr1:010087894	0.0	C/10087894-10088025,10087431-10087820,10086850-10087350	AT1G28710.1  CDS  gene_syn F1K23.9, F1K23_9  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28700.1); Has 204 Blast hits to 200 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 191; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G28710.1p  transcript_id AT1G28710.1  protein_id AT1G28710.1p  transcript_id AT1G28710.1  
At1g28720	chr1:010089437	0.0	W/10089437-10089508	AT1G28720.1  tRNA  gene_syn 51358.TRNA-PRO-26  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28720.1  
At1g28730	chr1:010089898	0.0	W/10089898-10089969	AT1G28730.1  tRNA  gene_syn 51358.TRNA-PRO-25  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: AGG)  transcript_id AT1G28730.1  
At1g28740	chr1:010090368	0.0	W/10090368-10090439	AT1G28740.1  tRNA  gene_syn 51358.TRNA-PRO-24  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28740.1  
At1g28750	chr1:010090769	0.0	W/10090769-10090840	AT1G28750.1  tRNA  gene_syn 51358.TRNA-PRO-23  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28750.1  
At1g28770	chr1:010092325	0.0	W/10092325-10092396	AT1G28770.1  tRNA  gene_syn 51358.TRNA-PRO-22  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28770.1  
At1g28780	chr1:010092801	0.0	W/10092801-10092872	AT1G28780.1  tRNA  gene_syn 51358.TRNA-PRO-21  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28780.1  
At1g28790	chr1:010093309	0.0	W/10093309-10093380	AT1G28790.1  tRNA  gene_syn 51358.TRNA-PRO-20  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28790.1  
At1g28800	chr1:010093746	0.0	W/10093746-10093817	AT1G28800.1  tRNA  gene_syn 51358.TRNA-PRO-19  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28800.1  
At1g28810	chr1:010094173	0.0	W/10094173-10094244	AT1G28810.1  tRNA  gene_syn 51358.TRNA-PRO-18  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28810.1  
At1g28815	chr1:010095812	0.0	W/10095812-10095913,10095999-10096244	AT1G28815.1  CDS  product unknown protein  note unknown protein; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28815.1p  transcript_id AT1G28815.1  protein_id AT1G28815.1p  transcript_id AT1G28815.1  
At1g28820	chr1:010096951	0.0	W/10096951-10097022	AT1G28820.1  tRNA  gene_syn 51358.TRNA-PRO-17  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: AGG)  transcript_id AT1G28820.1  
At1g28830	chr1:010097114	0.0	W/10097114-10097185	AT1G28830.1  tRNA  gene_syn 51358.TRNA-PRO-16  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28830.1  
At1g28840	chr1:010097718	0.0	W/10097718-10097789	AT1G28840.1  tRNA  gene_syn 51358.TRNA-PRO-15  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28840.1  
At1g28850	chr1:010098653	0.0	W/10098653-10098724	AT1G28850.1  tRNA  gene_syn 51358.TRNA-PRO-14  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28850.1  
At1g28860	chr1:010099079	0.0	W/10099079-10099150	AT1G28860.1  tRNA  gene_syn 51358.TRNA-PRO-13  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28860.1  
At1g28870	chr1:010099425	0.0	W/10099425-10099496	AT1G28870.1  tRNA  gene_syn 51358.TRNA-PRO-12  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: AGG)  transcript_id AT1G28870.1  
At1g28880	chr1:010099827	0.0	W/10099827-10099898	AT1G28880.1  tRNA  gene_syn 51358.TRNA-PRO-11  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28880.1  
At1g28890	chr1:010100273	0.0	W/10100273-10100344	AT1G28890.1  tRNA  gene_syn 51358.TRNA-PRO-10  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28890.1  
At1g28900	chr1:010101028	0.0	W/10101028-10101099	AT1G28900.1  tRNA  gene_syn 51358.TRNA-PRO-9  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28900.1  
At1g28910	chr1:010101600	0.0	W/10101600-10101671	AT1G28910.1  tRNA  gene_syn 51358.TRNA-PRO-8  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28910.1  
At1g28920	chr1:010101993	0.0	W/10101993-10102064	AT1G28920.1  tRNA  gene_syn 51358.TRNA-PRO-7  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28920.1  
At1g28760	chr1:010103158	0.0	W/10103158-10104588	AT1G28760.1  CDS  gene_syn F1K23.6, F1K23_6  product unknown protein  note unknown protein; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G67610.2); Has 101 Blast hits to 101 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28760.1p  transcript_id AT1G28760.1  protein_id AT1G28760.1p  transcript_id AT1G28760.1  
At1g28930	chr1:010106090	0.0	W/10106090-10106161	AT1G28930.1  tRNA  gene_syn 51358.TRNA-PRO-6  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28930.1  
At1g28940	chr1:010106528	0.0	W/10106528-10106599	AT1G28940.1  tRNA  gene_syn 51358.TRNA-PRO-5  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28940.1  
At1g28950	chr1:010106898	0.0	W/10106898-10106969	AT1G28950.1  tRNA  gene_syn 51358.TRNA-PRO-4  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28950.1  
At1g28970	chr1:010107649	0.0	W/10107649-10107720	AT1G28970.1  tRNA  gene_syn 51358.TRNA-PRO-3  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28970.1  
At1g28980	chr1:010108389	0.0	W/10108389-10108460	AT1G28980.1  tRNA  gene_syn 51358.TRNA-PRO-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28980.1  
At1g28990	chr1:010108710	0.0	W/10108710-10108781	AT1G28990.1  tRNA  gene_syn 51358.TRNA-PRO-1, 52095.TRNA-PRO-1, AT1G28975  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28990.1  
At1g28960	chr1:010111214	0.0	C/10111214-10111607,10110946-10111088,10110454-10110573,10110135-10110359	AT1G28960.1  CDS  gene_syn ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, ATNUDT15, ATNUDX15, F1K23.5, F1K23_5  gene ATNUDX15  go_component mitochondrion|GO:0005739|18815383|IDA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15); hydrolase  note ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15 (ATNUDX15); FUNCTIONS IN: hydrolase activity, CoA pyrophosphatase activity (sent to SF); INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), NUDIX hydrolase, core (InterPro:IPR000086), Nudix hydrolase, AtNUDT22 (InterPro:IPR017397); BEST Arabidopsis thaliana protein match is: atnudt22 (Arabidopsis thaliana Nudix hydrolase homolog 22); hydrolase (TAIR:AT2G33980.1); Has 2486 Blast hits to 2486 proteins in 782 species: Archae - 27; Bacteria - 1315; Metazoa - 138; Fungi - 119; Plants - 57; Viruses - 0; Other Eukaryotes - 830 (source: NCBI BLink).  protein_id AT1G28960.1p  transcript_id AT1G28960.1  protein_id AT1G28960.1p  transcript_id AT1G28960.1  
At1g28960	chr1:010111214	0.0	C/10111214-10111607,10110946-10111088,10110454-10110573,10110135-10110359	AT1G28960.3  CDS  gene_syn ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, ATNUDT15, ATNUDX15, F1K23.5, F1K23_5  gene ATNUDX15  go_component mitochondrion|GO:0005739|18815383|IDA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15); hydrolase  note ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15 (ATNUDX15); FUNCTIONS IN: hydrolase activity, CoA pyrophosphatase activity (sent to SF); INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), NUDIX hydrolase, core (InterPro:IPR000086), Nudix hydrolase, AtNUDT22 (InterPro:IPR017397); BEST Arabidopsis thaliana protein match is: atnudt22 (Arabidopsis thaliana Nudix hydrolase homolog 22); hydrolase (TAIR:AT2G33980.1); Has 2486 Blast hits to 2486 proteins in 782 species: Archae - 27; Bacteria - 1315; Metazoa - 138; Fungi - 119; Plants - 57; Viruses - 0; Other Eukaryotes - 830 (source: NCBI BLink).  protein_id AT1G28960.3p  transcript_id AT1G28960.3  protein_id AT1G28960.3p  transcript_id AT1G28960.3  
At1g28960	chr1:010111214	0.0	C/10111214-10111607,10110946-10111088,10110454-10110573,10110135-10110359	AT1G28960.5  CDS  gene_syn ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, ATNUDT15, ATNUDX15, F1K23.5, F1K23_5  gene ATNUDX15  go_component mitochondrion|GO:0005739|18815383|IDA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15); hydrolase  note ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15 (ATNUDX15); FUNCTIONS IN: hydrolase activity, CoA pyrophosphatase activity (sent to SF); INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), NUDIX hydrolase, core (InterPro:IPR000086), Nudix hydrolase, AtNUDT22 (InterPro:IPR017397); BEST Arabidopsis thaliana protein match is: atnudt22 (Arabidopsis thaliana Nudix hydrolase homolog 22); hydrolase (TAIR:AT2G33980.1); Has 2486 Blast hits to 2486 proteins in 782 species: Archae - 27; Bacteria - 1315; Metazoa - 138; Fungi - 119; Plants - 57; Viruses - 0; Other Eukaryotes - 830 (source: NCBI BLink).  protein_id AT1G28960.5p  transcript_id AT1G28960.5  protein_id AT1G28960.5p  transcript_id AT1G28960.5  
At1g28960	chr1:010111214	0.0	C/10111214-10111607,10110946-10111088,10110454-10110573,10110162-10110359,10110020-10110022	AT1G28960.2  CDS  gene_syn ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, ATNUDT15, ATNUDX15, F1K23.5, F1K23_5  gene ATNUDX15  go_component mitochondrion|GO:0005739|18815383|IDA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15); hydrolase  note ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15 (ATNUDX15); FUNCTIONS IN: hydrolase activity, CoA pyrophosphatase activity (sent to SF); INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), Nudix hydrolase, AtNUDT22 (InterPro:IPR017397), NUDIX hydrolase, core (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: atnudt22 (Arabidopsis thaliana Nudix hydrolase homolog 22); hydrolase (TAIR:AT2G33980.1); Has 2486 Blast hits to 2486 proteins in 782 species: Archae - 27; Bacteria - 1315; Metazoa - 138; Fungi - 119; Plants - 57; Viruses - 0; Other Eukaryotes - 830 (source: NCBI BLink).  protein_id AT1G28960.2p  transcript_id AT1G28960.2  protein_id AT1G28960.2p  transcript_id AT1G28960.2  
At1g28960	chr1:010111214	0.0	C/10111214-10111607,10110946-10111088,10110454-10110573,10110162-10110359,10110020-10110022	AT1G28960.4  CDS  gene_syn ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, ATNUDT15, ATNUDX15, F1K23.5, F1K23_5  gene ATNUDX15  go_component mitochondrion|GO:0005739|18815383|IDA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15); hydrolase  note ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15 (ATNUDX15); FUNCTIONS IN: hydrolase activity, CoA pyrophosphatase activity (sent to SF); INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), NUDIX hydrolase, core (InterPro:IPR000086), Nudix hydrolase, AtNUDT22 (InterPro:IPR017397); BEST Arabidopsis thaliana protein match is: atnudt22 (Arabidopsis thaliana Nudix hydrolase homolog 22); hydrolase (TAIR:AT2G33980.1); Has 2486 Blast hits to 2486 proteins in 782 species: Archae - 27; Bacteria - 1315; Metazoa - 138; Fungi - 119; Plants - 57; Viruses - 0; Other Eukaryotes - 830 (source: NCBI BLink).  protein_id AT1G28960.4p  transcript_id AT1G28960.4  protein_id AT1G28960.4p  transcript_id AT1G28960.4  
At1g29000	chr1:010113018	0.0	W/10113018-10113138,10113388-10113593,10113685-10113772,10113892-10114340	AT1G29000.1  CDS  gene_syn F1K23.4, F1K23_4  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: ATFP3; metal ion binding / transition metal ion binding (TAIR:AT5G63530.2); Has 56039 Blast hits to 24050 proteins in 1217 species: Archae - 218; Bacteria - 3970; Metazoa - 23746; Fungi - 4979; Plants - 2054; Viruses - 503; Other Eukaryotes - 20569 (source: NCBI BLink).  protein_id AT1G29000.1p  transcript_id AT1G29000.1  protein_id AT1G29000.1p  transcript_id AT1G29000.1  
At1g29010	chr1:010117715	0.0	W/10117715-10118074,10118166-10118273,10118366-10118445,10118547-10118709,10118782-10118973	AT1G29010.1  CDS  gene_syn F28N24.31  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34010.1); Has 14 Blast hits to 13 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29010.1p  transcript_id AT1G29010.1  protein_id AT1G29010.1p  transcript_id AT1G29010.1  
At1g29020	chr1:010126485	0.0	C/10126485-10126875,10126236-10126396,10126103-10126163,10125835-10126016,10125607-10125746,10125254-10125509,10124880-10125176,10124643-10124772,10122512-10122859,10122259-10122420,10121912-10121988,10121587-10121750,10121242-10121497,10120861-10121154,10120497-10120766	AT1G29020.1  CDS  gene_syn F28N24.34  go_component endomembrane system|GO:0012505||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: root, callus; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium ion binding (TAIR:AT2G34020.1); Has 277 Blast hits to 201 proteins in 49 species: Archae - 8; Bacteria - 0; Metazoa - 57; Fungi - 5; Plants - 154; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT1G29020.1p  transcript_id AT1G29020.1  protein_id AT1G29020.1p  transcript_id AT1G29020.1  
At1g29030	chr1:010133608	0.0	C/10133608-10133697,10133208-10133369,10132978-10133077,10132830-10132895,10132444-10132535,10132013-10132087,10131778-10131927,10131070-10131135,10130906-10130971,10130529-10130639,10130293-10130382,10130108-10130214,10129885-10129999,10129734-10129799,10129512-10129615,10129201-10129411	AT1G29030.1  CDS  gene_syn F28N24.26, F28N24_26  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product apoptosis inhibitory 5 (API5) family protein  note apoptosis inhibitory 5 (API5) family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Apoptosis inhibitory 5 (InterPro:IPR008383), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: apoptosis inhibitory 5 (API5) family protein (TAIR:AT2G34040.1); Has 774 Blast hits to 590 proteins in 143 species: Archae - 2; Bacteria - 48; Metazoa - 221; Fungi - 85; Plants - 108; Viruses - 7; Other Eukaryotes - 303 (source: NCBI BLink).  protein_id AT1G29030.1p  transcript_id AT1G29030.1  protein_id AT1G29030.1p  transcript_id AT1G29030.1  
At1g29040	chr1:010134120	0.0	W/10134120-10134397,10134505-10134536,10134686-10134797,10135051-10135180	AT1G29040.2  CDS  gene_syn F28N24.25, F28N24_25  go_component vacuole|GO:0005773|15539469|IDA  go_component chloroplast|GO:0009507|18431481|IDA  product unknown protein  note unknown protein; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP02058 (InterPro:IPR011719); Has 107 Blast hits to 107 proteins in 44 species: Archae - 0; Bacteria - 78; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G29040.2p  transcript_id AT1G29040.2  protein_id AT1G29040.2p  transcript_id AT1G29040.2  
At1g29040	chr1:010134120	0.0	W/10134120-10134397,10134505-10134581,10134686-10134797,10135051-10135180	AT1G29040.1  CDS  gene_syn F28N24.25, F28N24_25  go_component vacuole|GO:0005773|15539469|IDA  go_component chloroplast|GO:0009507|18431481|IDA  product unknown protein  note unknown protein; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP02058 (InterPro:IPR011719); Has 235 Blast hits to 235 proteins in 66 species: Archae - 0; Bacteria - 138; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT1G29040.1p  transcript_id AT1G29040.1  protein_id AT1G29040.1p  transcript_id AT1G29040.1  
At1g29040	chr1:010134120	0.0	W/10134120-10134397,10134505-10134581,10134686-10134797,10135051-10135180	AT1G29040.4  CDS  gene_syn F28N24.25, F28N24_25  product unknown protein  note unknown protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP02058 (InterPro:IPR011719).  protein_id AT1G29040.4p  transcript_id AT1G29040.4  protein_id AT1G29040.4p  transcript_id AT1G29040.4  
At1g29040	chr1:010134120	0.0	W/10134120-10134397,10134505-10134621,10134727-10134797,10135051-10135064	AT1G29040.3  CDS  gene_syn F28N24.25, F28N24_25  go_component vacuole|GO:0005773|15539469|IDA  go_component chloroplast|GO:0009507|18431481|IDA  product unknown protein  note unknown protein; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP02058 (InterPro:IPR011719); Has 63 Blast hits to 63 proteins in 27 species: Archae - 0; Bacteria - 41; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G29040.3p  transcript_id AT1G29040.3  protein_id AT1G29040.3p  transcript_id AT1G29040.3  
At1g29041	chr1:010135451	0.0	W/10135451-10135987	AT1G29041.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT1G29041.1p  transcript_id AT1G29041.1  protein_id AT1G29041.1p  transcript_id AT1G29041.1  
At1g29050	chr1:010138739	0.0	C/10138739-10139082,10138074-10138245,10137003-10137181,10136775-10136933,10136376-10136664	AT1G29050.1  CDS  gene_syn F28N24.24, F28N24_24  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34070.1); Has 710 Blast hits to 699 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 709; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G29050.1p  transcript_id AT1G29050.1  protein_id AT1G29050.1p  transcript_id AT1G29050.1  
At1g29060	chr1:010147857	0.0	W/10147857-10147918,10148042-10148165,10148603-10148659,10149298-10149459	AT1G29060.1  CDS  gene_syn F28N24.23, F28N24_23  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14600.1); Has 95 Blast hits to 95 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 15; Plants - 47; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G29060.1p  transcript_id AT1G29060.1  protein_id AT1G29060.1p  transcript_id AT1G29060.1  
At1g29070	chr1:010149884	0.0	W/10149884-10150097,10150896-10151155	AT1G29070.1  CDS  gene_syn F28N24.22, F28N24_22  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_component chloroplast|GO:0009507||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L34 family protein  note ribosomal protein L34 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34 (InterPro:IPR000271); Has 389 Blast hits to 389 proteins in 164 species: Archae - 0; Bacteria - 342; Metazoa - 0; Fungi - 9; Plants - 23; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G29070.1p  transcript_id AT1G29070.1  protein_id AT1G29070.1p  transcript_id AT1G29070.1  
At1g29071	chr1:010151668	0.0	C/10151668-10151774	AT1G29071.1  snoRNA  gene_syn SMALL NUCLEOLAR RNA 105, SNOR105  gene SNOR105  function predicted to encode a C/D box type of snoRNA, also known as Ath-282 (GB:AJ505633). But, the submitted sequence of 106 nucleotides is only part of the 162 nucleotide sequence predicted by Northern blotting. It is assumed that a 5  portion of the gene is missing and its 5  end has not been conclusively mapped. Sequence analysis of this snoRNA suggests that it may not function like other C/D box family members that modify rRNAs or snRNAs. Its true biological target remains unknown. The promoter of this snoRNA has hallmarks of the snRNA promoters targeted by RNA polymerase II, indicating that it might also have a TMG (2,2,7 trimethyguanosine) cap. SnoRNA105 may also play a novel role in ribosome biogenesis (Marker 2002). Northern blotting reveals that snoRNA105 expression levels are higher in seedlings than in adult plants.  go_component cellular_component|GO:0005575||ND  go_process ribosome biogenesis|GO:0042254|12477388|TAS  go_function molecular_function|GO:0003674||ND  product SNOR105 (SMALL NUCLEOLAR RNA 105); snoRNA  transcript_id AT1G29071.1  
At1g29075	chr1:010153543	0.0	W/10153543-10154701	AT1G29075.1  mRNA_TE_gene  pseudo  gene_syn F28N24.21  note Transposable element gene, pseudogene, hypothetical protein, similar to mutator-like transposase GB:AAC97243 GI:4038062 from (Arabidopsis thaliana)  
At1g29080	chr1:010158221	0.0	C/10158221-10158674,10157494-10158080	AT1G29080.1  CDS  gene_syn F28N24.27, F28N24_27  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product peptidase C1A papain family protein  note peptidase C1A papain family protein; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: peptidase C1A papain family protein (TAIR:AT1G29090.1); Has 6127 Blast hits to 6088 proteins in 585 species: Archae - 29; Bacteria - 116; Metazoa - 2820; Fungi - 4; Plants - 1218; Viruses - 118; Other Eukaryotes - 1822 (source: NCBI BLink).  protein_id AT1G29080.1p  transcript_id AT1G29080.1  protein_id AT1G29080.1p  transcript_id AT1G29080.1  
At1g29090	chr1:010163905	0.0	C/10163905-10164385,10163103-10163689	AT1G29090.1  CDS  gene_syn F28N24.20, F28N24_20  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product peptidase C1A papain family protein  note peptidase C1A papain family protein; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: cysteine proteinase, putative (TAIR:AT2G34080.1); Has 6151 Blast hits to 6107 proteins in 580 species: Archae - 27; Bacteria - 101; Metazoa - 2851; Fungi - 4; Plants - 1232; Viruses - 120; Other Eukaryotes - 1816 (source: NCBI BLink).  protein_id AT1G29090.1p  transcript_id AT1G29090.1  protein_id AT1G29090.1p  transcript_id AT1G29090.1  
At1g29100	chr1:010169084	0.0	W/10169084-10169150,10169261-10169619	AT1G29100.1  CDS  gene_syn F28N24.19, F28N24_19  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_process copper ion transport|GO:0006825||ISS  go_function copper ion binding|GO:0005507||ISS  product copper-binding family protein  note copper-binding family protein; FUNCTIONS IN: copper ion binding, metal ion binding; INVOLVED IN: copper ion transport, metal ion transport; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: copper-binding family protein (TAIR:AT1G06330.1); Has 500 Blast hits to 488 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 12; Plants - 485; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29100.1p  transcript_id AT1G29100.1  protein_id AT1G29100.1p  transcript_id AT1G29100.1  
At1g29110	chr1:010171683	0.0	W/10171683-10172136,10172521-10173071	AT1G29110.1  CDS  gene_syn F28N24.18, F28N24_18  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product cysteine proteinase, putative  note cysteine proteinase, putative; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain (InterPro:IPR013128), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: peptidase C1A papain family protein (TAIR:AT1G29080.1); Has 5899 Blast hits to 5864 proteins in 552 species: Archae - 17; Bacteria - 32; Metazoa - 2765; Fungi - 2; Plants - 1200; Viruses - 122; Other Eukaryotes - 1761 (source: NCBI BLink).  protein_id AT1G29110.1p  transcript_id AT1G29110.1  protein_id AT1G29110.1p  transcript_id AT1G29110.1  
At1g29120	chr1:010174481	0.0	W/10174481-10174670,10175213-10175363,10175592-10175659,10176001-10176071,10176188-10176433,10176741-10176904,10176987-10177042,10177138-10177190,10177614-10177811	AT1G29120.3  CDS  gene_syn AT1G29130, F28N24.29, F28N24_29  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF676, hydrolase-like (InterPro:IPR007751); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25770.1); Has 468 Blast hits to 468 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 197; Plants - 87; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT1G29120.3p  transcript_id AT1G29120.3  protein_id AT1G29120.3p  transcript_id AT1G29120.3  
At1g29120	chr1:010174481	0.0	W/10174481-10174670,10175216-10175363,10175592-10175659,10176001-10176071,10176188-10176433,10176741-10176904,10176987-10177042,10177138-10177190,10177614-10177782,10177861-10177958,10178039-10178143	AT1G29120.1  CDS  gene_syn AT1G29130, F28N24.29, F28N24_29  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF676, hydrolase-like (InterPro:IPR007751); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25770.1); Has 477 Blast hits to 470 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 197; Plants - 96; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT1G29120.1p  transcript_id AT1G29120.1  protein_id AT1G29120.1p  transcript_id AT1G29120.1  
At1g29120	chr1:010174481	0.0	W/10174481-10174670,10175216-10175363,10175592-10175659,10176001-10176071,10176188-10176433,10176741-10176904,10176987-10177042,10177138-10177190,10177614-10177782,10177861-10177958,10178039-10178143	AT1G29120.2  CDS  gene_syn AT1G29130, F28N24.29, F28N24_29  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF676, hydrolase-like (InterPro:IPR007751); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25770.1); Has 477 Blast hits to 470 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 197; Plants - 96; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT1G29120.2p  transcript_id AT1G29120.2  protein_id AT1G29120.2p  transcript_id AT1G29120.2  
At1g29120	chr1:010174481	0.0	W/10174481-10174670,10175216-10175363,10175592-10175659,10176001-10176071,10176188-10176433,10176741-10176904,10176987-10177042,10177138-10177190,10177614-10177784,10177861-10177869	AT1G29120.4  CDS  gene_syn AT1G29130, F28N24.29, F28N24_29  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF676, hydrolase-like (InterPro:IPR007751); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25770.1); Has 468 Blast hits to 468 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 197; Plants - 87; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT1G29120.4p  transcript_id AT1G29120.4  protein_id AT1G29120.4p  transcript_id AT1G29120.4  
At1g29140	chr1:010179029	0.0	W/10179029-10179197,10179465-10179811	AT1G29140.1  CDS  gene_syn F28N24.16, F28N24_16  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pollen Ole e 1 allergen and extensin family protein  note pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen and extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: pollen Ole e 1 allergen and extensin family protein (TAIR:AT5G45880.1); Has 207 Blast hits to 207 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 207; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29140.1p  transcript_id AT1G29140.1  protein_id AT1G29140.1p  transcript_id AT1G29140.1  
At1g29150	chr1:010181240	0.0	W/10181240-10182499	AT1G29150.1  CDS  gene_syn ARABIDOPSIS NON-ATPASE SUBUNIT 9, ATS9, REGULATORY PARTICLE NON-ATPASE 6, RPN6  gene ATS9  function specifically interacts with FUS6/COP11 via the C-terminal domain of FUS6/COP11 and associates with an ATPase subunit of the 19S proteasome regulatory complex, AtS6A.  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component nucleus|GO:0005634|11742986|TAS  go_component proteasome regulatory particle, lid subcomplex|GO:0008541||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_process protein catabolic process|GO:0030163|11742986|TAS  product ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)  note ARABIDOPSIS NON-ATPASE SUBUNIT 9 (ATS9); INVOLVED IN: response to cadmium ion, protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus, proteasome regulatory particle, lid subcomplex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Proteasome component region PCI (InterPro:IPR000717), PCI/PINT associated module (InterPro:IPR013143); BEST Arabidopsis thaliana protein match is: FUS12 (FUSCA 12) (TAIR:AT2G26990.1); Has 645 Blast hits to 630 proteins in 171 species: Archae - 0; Bacteria - 2; Metazoa - 250; Fungi - 153; Plants - 131; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).  protein_id AT1G29150.1p  transcript_id AT1G29150.1  protein_id AT1G29150.1p  transcript_id AT1G29150.1  
At1g29160	chr1:010183797	0.0	C/10183797-10184324	AT1G29160.1  CDS  gene_syn F28N24.35  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product Dof-type zinc finger domain-containing protein  note Dof-type zinc finger domain-containing protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT2G34140.1); Has 618 Blast hits to 614 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 613; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G29160.1p  transcript_id AT1G29160.1  protein_id AT1G29160.1p  transcript_id AT1G29160.1  
At1g29170	chr1:010194764	0.0	C/10194764-10194900,10194126-10194289,10193600-10193723,10193377-10193506,10193221-10193288,10190964-10193142,10190720-10190839	AT1G29170.2  CDS  gene_syn ATSCAR3, F28N24.14, F28N24_14, SCAR3, WASP (WISKOTT-ALDRICH SYNDROME PROTEIN)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 2, WAVE2  gene WAVE2  function Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.  go_component SCAR complex|GO:0031209|18424615|TAS  go_process positive regulation of actin nucleation|GO:0051127|18424615|IMP  go_function molecular_function|GO:0003674||ND  product WAVE2  note WAVE2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: positive regulation of actin nucleation; LOCATED IN: SCAR complex; BEST Arabidopsis thaliana protein match is: WAVE1; actin monomer binding (TAIR:AT2G34150.2); Has 933 Blast hits to 708 proteins in 141 species: Archae - 0; Bacteria - 189; Metazoa - 401; Fungi - 57; Plants - 109; Viruses - 4; Other Eukaryotes - 173 (source: NCBI BLink).  protein_id AT1G29170.2p  transcript_id AT1G29170.2  protein_id AT1G29170.2p  transcript_id AT1G29170.2  
At1g29170	chr1:010194764	0.0	C/10194764-10194900,10194126-10194289,10193600-10193723,10193377-10193506,10193221-10193288,10190964-10193142,10190747-10190839,10190530-10190646,10190352-10190402	AT1G29170.1  CDS  gene_syn ATSCAR3, F28N24.14, F28N24_14, SCAR3, WASP (WISKOTT-ALDRICH SYNDROME PROTEIN)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 2, WAVE2  gene WAVE2  function Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.  go_component SCAR complex|GO:0031209|18424615|TAS  go_process positive regulation of actin nucleation|GO:0051127|18424615|IMP  go_function molecular_function|GO:0003674||ND  product WAVE2  note WAVE2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: positive regulation of actin nucleation; LOCATED IN: SCAR complex; BEST Arabidopsis thaliana protein match is: WAVE1; actin monomer binding (TAIR:AT2G34150.2); Has 1048 Blast hits to 798 proteins in 162 species: Archae - 0; Bacteria - 181; Metazoa - 457; Fungi - 58; Plants - 141; Viruses - 4; Other Eukaryotes - 207 (source: NCBI BLink).  protein_id AT1G29170.1p  transcript_id AT1G29170.1  protein_id AT1G29170.1p  transcript_id AT1G29170.1  
At1g29170	chr1:010194764	0.0	C/10194764-10194900,10194126-10194289,10193600-10193723,10193377-10193506,10193221-10193288,10190964-10193142,10190747-10190839,10190588-10190632	AT1G29170.3  CDS  gene_syn ATSCAR3, F28N24.14, F28N24_14, SCAR3, WASP (WISKOTT-ALDRICH SYNDROME PROTEIN)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 2, WAVE2  gene WAVE2  function Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.  go_component SCAR complex|GO:0031209|18424615|TAS  go_process positive regulation of actin nucleation|GO:0051127|18424615|IMP  go_function molecular_function|GO:0003674||ND  product WAVE2  note WAVE2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: positive regulation of actin nucleation; LOCATED IN: SCAR complex; BEST Arabidopsis thaliana protein match is: WAVE1; actin monomer binding (TAIR:AT2G34150.2); Has 931 Blast hits to 708 proteins in 141 species: Archae - 0; Bacteria - 189; Metazoa - 401; Fungi - 57; Plants - 109; Viruses - 4; Other Eukaryotes - 171 (source: NCBI BLink).  protein_id AT1G29170.3p  transcript_id AT1G29170.3  protein_id AT1G29170.3p  transcript_id AT1G29170.3  
At1g29179	chr1:010198862	0.0	W/10198862-10199578	AT1G29179.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT1G44020.1); Has 165 Blast hits to 57 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 16; Plants - 144; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G29179.1p  transcript_id AT1G29179.1  protein_id AT1G29179.1p  transcript_id AT1G29179.1  
At1g29180	chr1:010199628	0.0	W/10199628-10200962	AT1G29180.1  CDS  gene_syn F28N24.13, F28N24_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, leaf whorl, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT5G48320.1); Has 1085 Blast hits to 487 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 1055; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G29180.1p  transcript_id AT1G29180.1  protein_id AT1G29180.1p  transcript_id AT1G29180.1  
At1g29190	chr1:010201045	0.0	C/10201045-10201799	AT1G29190.1  pseudogenic_transcript  pseudo  gene_syn F28N24.33  note pseudogene, hypothetical protein  
At1g29195	chr1:010202673	0.0	C/10202673-10203254	AT1G29195.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1); Has 102 Blast hits to 102 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29195.1p  transcript_id AT1G29195.1  protein_id AT1G29195.1p  transcript_id AT1G29195.1  
At1g29210	chr1:010207306	0.0	C/10207306-10207378	AT1G29210.1  tRNA  gene_syn 52095.TRNA-GLU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Glu (anticodon: CTC)  transcript_id AT1G29210.1  
At1g29200	chr1:010208002	0.0	W/10208002-10208361,10208437-10208511,10208589-10208765,10208843-10208931,10209014-10209131,10209215-10209358,10209438-10209763,10209847-10210087,10210183-10210488	AT1G29200.2  CDS  gene_syn F28N24.11, F28N24_11  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62330.1); Has 435 Blast hits to 422 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 435; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29200.2p  transcript_id AT1G29200.2  protein_id AT1G29200.2p  transcript_id AT1G29200.2  
At1g29200	chr1:010208425	0.0	W/10208425-10208511,10208589-10208765,10208843-10208931,10209014-10209131,10209215-10209358,10209438-10209763,10209847-10210087,10210183-10210488	AT1G29200.1  CDS  gene_syn F28N24.11, F28N24_11  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62330.1); Has 433 Blast hits to 420 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 433; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29200.1p  transcript_id AT1G29200.1  protein_id AT1G29200.1p  transcript_id AT1G29200.1  
At1g29200	chr1:010208724	0.0	W/10208724-10208765,10208843-10208931,10209014-10209131,10209215-10209358,10209438-10209763,10209847-10210087,10210183-10210488	AT1G29200.3  CDS  gene_syn F28N24.11, F28N24_11  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62330.1); Has 432 Blast hits to 419 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 432; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29200.3p  transcript_id AT1G29200.3  protein_id AT1G29200.3p  transcript_id AT1G29200.3  
At1g29220	chr1:010212134	0.0	C/10212134-10212571,10211606-10211807,10211242-10211373,10211064-10211158,10210842-10210963,10210678-10210744	AT1G29220.1  CDS  gene_syn F28N24.10, F28N24_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transcription regulator activity|GO:0030528||ISS  product transcriptional regulator family protein  note transcriptional regulator family protein; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HCNGP-like (InterPro:IPR012479); Has 10343 Blast hits to 2896 proteins in 211 species: Archae - 2; Bacteria - 122; Metazoa - 7536; Fungi - 402; Plants - 244; Viruses - 187; Other Eukaryotes - 1850 (source: NCBI BLink).  protein_id AT1G29220.1p  transcript_id AT1G29220.1  protein_id AT1G29220.1p  transcript_id AT1G29220.1  
At1g29230	chr1:010214860	0.0	W/10214860-10216422	AT1G29230.1  CDS  gene_syn ATWL1, CBL-INTERACTING PROTEIN KINASE 18, CIPK18, F28N24.9, F28N24_9, SNF1-RELATED PROTEIN KINASE 3.20, SnRK3.20, WL1, WPL4-LIKE 1  gene CIPK18  function Encodes a member of the SNF1-related kinase (SnRK) gene family (SnRK3.20), which has also been reported as a member of the CBL-interacting protein kinases (CIPK18).  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product CIPK18 (CBL-INTERACTING PROTEIN KINASE 18); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note CBL-INTERACTING PROTEIN KINASE 18 (CIPK18); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: signal transduction, protein amino acid phosphorylation; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CIPK13 (CBL-INTERACTING PROTEIN KINASE 13); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT2G34180.1); Has 95405 Blast hits to 93884 proteins in 3076 species: Archae - 79; Bacteria - 8678; Metazoa - 41027; Fungi - 8676; Plants - 18136; Viruses - 474; Other Eukaryotes - 18335 (source: NCBI BLink).  protein_id AT1G29230.1p  transcript_id AT1G29230.1  protein_id AT1G29230.1p  transcript_id AT1G29230.1  
At1g29240	chr1:010217968	0.0	C/10217968-10218924,10217150-10217887,10217023-10217061	AT1G29240.1  CDS  gene_syn F28N24.8, F28N24_8  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34170.2); Has 42 Blast hits to 42 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29240.1p  transcript_id AT1G29240.1  protein_id AT1G29240.1p  transcript_id AT1G29240.1  
At1g29250	chr1:010224473	0.0	C/10224473-10224592,10224142-10224190,10223846-10223908,10223681-10223745,10223461-10223556	AT1G29250.1  CDS  gene_syn F28N24.7, F28N24_7  go_component nucleus|GO:0005634|14617066|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alba, DNA/RNA-binding protein (InterPro:IPR002775), Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related (InterPro:IPR014560); BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT2G34160.1); Has 89 Blast hits to 89 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G29250.1p  transcript_id AT1G29250.1  protein_id AT1G29250.1p  transcript_id AT1G29250.1  
At1g29260	chr1:010224923	0.0	W/10224923-10225876	AT1G29260.1  CDS  gene_syn F28N24.6, F28N24_6, PEROXISOMAL TARGETING SIGNAL TYPE 2 RECEPTOR, PEX7  gene PEX7  function Encodes the peroxisomal targeting signal type 2 receptor that facilitates peroxisomal protein translocation. It recognizes proteins with the PTS2 consensus sequence (RLX5HL or a variant) within the first 30 or so amino acids. RNAi experiments suggest that PEX7 is necessary for the maintenance of glyoxysomal but not leaf peroxisomal function.  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process protein targeting to peroxisome|GO:0006625|15548601|IMP  go_function peroxisome matrix targeting signal-2 binding|GO:0005053||ISS  go_function protein binding|GO:0005515|11978862|IPI  go_function protein binding|GO:0005515|16813573|IPI  product PEX7; peroxisome matrix targeting signal-2 binding / protein binding  note PEX7; FUNCTIONS IN: protein binding, peroxisome matrix targeting signal-2 binding; INVOLVED IN: protein targeting to peroxisome; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: MSI1 (MULTICOPY SUPRESSOR OF IRA1); protein binding (TAIR:AT5G58230.1); Has 35339 Blast hits to 19300 proteins in 528 species: Archae - 36; Bacteria - 3429; Metazoa - 16548; Fungi - 7388; Plants - 3368; Viruses - 0; Other Eukaryotes - 4570 (source: NCBI BLink).  protein_id AT1G29260.1p  transcript_id AT1G29260.1  protein_id AT1G29260.1p  transcript_id AT1G29260.1  
At1g29265	chr1:010227073	0.0	W/10227073-10227195	AT1G29265.1  miRNA  gene_syn MICRORNA399A, MIR399A  gene MIR399A  function Encodes a phosphate starvation-responsive microRNA that targets PHO2, an E2-UBC that negatively affects shoot phosphate content. miR399 can be negatively regulated by members of the non-coding gene families IPS1 and At4. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGCCAAAGGAGAUUUGCCCUG  product MIR399A (MICRORNA399A); miRNA  transcript_id AT1G29265.1  
At1g29270	chr1:010230319	0.0	W/10230319-10230435,10230767-10231021	AT1G29270.1  CDS  gene_syn F28N24.5, F28N24_5  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: F mature embryo stage, 4 leaf senescence stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40435.1); Has 50 Blast hits to 50 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29270.1p  transcript_id AT1G29270.1  protein_id AT1G29270.1p  transcript_id AT1G29270.1  
At1g29280	chr1:010236589	0.0	W/10236589-10236722,10236822-10237467	AT1G29280.1  CDS  gene_syn AtWRKY65, F28N24.4, F28N24_4, WRKY65  gene WRKY65  function member of WRKY Transcription Factor; Group II-e  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY65; transcription factor  note WRKY65; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY69; transcription factor (TAIR:AT3G58710.1); Has 2252 Blast hits to 1954 proteins in 165 species: Archae - 4; Bacteria - 56; Metazoa - 46; Fungi - 23; Plants - 1945; Viruses - 4; Other Eukaryotes - 174 (source: NCBI BLink).  protein_id AT1G29280.1p  transcript_id AT1G29280.1  protein_id AT1G29280.1p  transcript_id AT1G29280.1  
At1g29290	chr1:010245055	0.0	W/10245055-10245378	AT1G29290.1  CDS  gene_syn F28N24.30, F28N24_30  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29290.1p  transcript_id AT1G29290.1  protein_id AT1G29290.1p  transcript_id AT1G29290.1  
At1g29300	chr1:010248120	0.0	C/10248120-10249499	AT1G29300.1  CDS  gene_syn F28N24.3, F28N24_3, UNE1, unfertilized embryo sac 1  gene UNE1  go_process double fertilization forming a zygote and endosperm|GO:0009567|15634699|IMP  product UNE1 (unfertilized embryo sac 1)  note unfertilized embryo sac 1 (UNE1); INVOLVED IN: double fertilization forming a zygote and endosperm; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF641, plant (InterPro:IPR006943); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14870.3); Has 202 Blast hits to 202 proteins in 24 species: Archae - 0; Bacteria - 19; Metazoa - 3; Fungi - 2; Plants - 172; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G29300.1p  transcript_id AT1G29300.1  protein_id AT1G29300.1p  transcript_id AT1G29300.1  
At1g29310	chr1:010252662	0.0	W/10252662-10253005,10253079-10253306,10253416-10253770,10253856-10253980,10254065-10254200,10254287-10254526	AT1G29310.1  CDS  gene_syn F28N24.2, F28N24_2  go_component mitochondrion|GO:0005739|15276431|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process protein transport|GO:0015031||IEA  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||IEA  go_component membrane|GO:0016020||ISS  go_process protein secretion|GO:0009306||ISS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product P-P-bond-hydrolysis-driven protein transmembrane transporter  note P-P-bond-hydrolysis-driven protein transmembrane transporter; FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein secretion, protein transport; LOCATED IN: mitochondrion, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SecY protein (InterPro:IPR002208); BEST Arabidopsis thaliana protein match is: protein transport protein sec61, putative (TAIR:AT2G34250.2); Has 2785 Blast hits to 2779 proteins in 1207 species: Archae - 193; Bacteria - 1623; Metazoa - 225; Fungi - 153; Plants - 68; Viruses - 0; Other Eukaryotes - 523 (source: NCBI BLink).  protein_id AT1G29310.1p  transcript_id AT1G29310.1  protein_id AT1G29310.1p  transcript_id AT1G29310.1  
At1g29320	chr1:010255355	0.0	W/10255355-10255436,10255514-10255629,10256176-10256205,10256312-10256448,10256546-10256725,10256825-10256888,10256991-10257098,10257173-10257326,10257408-10257497,10257621-10257676,10257753-10257810,10257907-10258238	AT1G29320.1  CDS  gene_syn F28N24.28, F28N24_28  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); Has 11024 Blast hits to 5089 proteins in 332 species: Archae - 23; Bacteria - 931; Metazoa - 4413; Fungi - 1329; Plants - 526; Viruses - 46; Other Eukaryotes - 3756 (source: NCBI BLink).  protein_id AT1G29320.1p  transcript_id AT1G29320.1  protein_id AT1G29320.1p  transcript_id AT1G29320.1  
At1g29330	chr1:010260816	0.0	C/10260816-10260906,10260151-10260416,10259328-10259443,10258855-10258928,10258705-10258768,10258580-10258616	AT1G29330.1  CDS  gene_syn AERD2, ARABIDOPSIS ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ARABIDOPSIS THALIANA ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ATERD2, ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ERD2, F28N24.1  gene ERD2  function Encodes a protein similar in sequence to animal and yeast endoplasmic reticulum retention signal receptor. This protein can functionally complement the yeast homologue. Transcript is detected in flower buds, stems, root, and leaves.  go_component endoplasmic reticulum|GO:0005783|16244155|IDA  go_component Golgi apparatus|GO:0005794|16244155|IDA  go_component cis-Golgi network|GO:0005801|10972878|IDA  go_component integral to membrane|GO:0016021||ISS  go_process protein retention in ER lumen|GO:0006621|8248265|IGI  go_process protein transport|GO:0015031||ISS  go_function receptor activity|GO:0004872||ISS  go_function KDEL sequence binding|GO:0005046|8248265|IGI  product ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2); KDEL sequence binding / receptor  note ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2 (ERD2); FUNCTIONS IN: receptor activity, KDEL sequence binding; INVOLVED IN: protein retention in ER lumen, protein transport; LOCATED IN: integral to membrane, endoplasmic reticulum, Golgi apparatus, cis-Golgi network; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ER lumen protein retaining receptor (InterPro:IPR000133); BEST Arabidopsis thaliana protein match is: ER lumen protein retaining receptor, putative / HDEL receptor, putative (TAIR:AT3G25040.1); Has 640 Blast hits to 639 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 270; Fungi - 121; Plants - 119; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink).  protein_id AT1G29330.1p  transcript_id AT1G29330.1  protein_id AT1G29330.1p  transcript_id AT1G29330.1  
At1g29340	chr1:010264412	0.0	W/10264412-10266601	AT1G29340.1  CDS  gene_syn ARABIDOPSIS THALIANA PLANT U-BOX 17, ATPUB17, F15D2.34, F15D2_34, PLANT U-BOX 17, PUB17  gene PUB17  function Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity. It is required for cell death and full resistance specified by Arabidopsis RPM1 and RPS4 resistance proteins against Pseudomonas syringae pv tomato.  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process apoptosis|GO:0006915|16531496|IGI  go_process defense response, incompatible interaction|GO:0009814|16531496|IMP  go_process defense response to fungus, incompatible interaction|GO:0009817|16531496|IGI  go_process protein ubiquitination|GO:0016567|16531496|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16531496|IDA  product PUB17 (PLANT U-BOX 17); ubiquitin-protein ligase  note PLANT U-BOX 17 (PUB17); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: defense response to fungus, incompatible interaction, defense response, incompatible interaction, apoptosis, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein / U-box domain-containing protein (TAIR:AT5G01830.1); Has 2503 Blast hits to 2087 proteins in 180 species: Archae - 2; Bacteria - 16; Metazoa - 432; Fungi - 274; Plants - 1457; Viruses - 3; Other Eukaryotes - 319 (source: NCBI BLink).  protein_id AT1G29340.1p  transcript_id AT1G29340.1  protein_id AT1G29340.1p  transcript_id AT1G29340.1  
At1g29350	chr1:010273433	0.0	C/10273433-10273613,10273007-10273050,10272479-10272596,10272282-10272396,10271239-10271768,10270642-10270879,10270267-10270552,10269888-10270052,10269186-10269677,10268761-10269087	AT1G29350.1  CDS  gene_syn F15D2.27, F15D2_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1296 (InterPro:IPR009719); BEST Arabidopsis thaliana protein match is: kinase-related (TAIR:AT1G29370.1); Has 13611 Blast hits to 7582 proteins in 387 species: Archae - 0; Bacteria - 354; Metazoa - 5683; Fungi - 1538; Plants - 892; Viruses - 68; Other Eukaryotes - 5076 (source: NCBI BLink).  protein_id AT1G29350.1p  transcript_id AT1G29350.1  protein_id AT1G29350.1p  transcript_id AT1G29350.1  
At1g29355	chr1:010274048	0.0	W/10274048-10274049,10274394-10275090,10275315-10275539	AT1G29355.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 28 Blast hits to 28 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 4; Plants - 0; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G29355.1p  transcript_id AT1G29355.1  protein_id AT1G29355.1p  transcript_id AT1G29355.1  
At1g29357	chr1:010274102	0.0	C/10274102-10275656	AT1G29357.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G29355  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G29357.1  
At1g29357	chr1:010274141	0.0	C/10274141-10275718	AT1G29357.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G29355  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G29357.2  
At1g29360	chr1:010275979	0.0	W/10275979-10277747	AT1G29360.1  mRNA_TE_gene  pseudo  gene_syn F15D2.40  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.1e-24 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At1g29370	chr1:010282844	0.0	C/10282844-10283024,10282418-10282461,10281890-10282007,10281695-10281809,10280556-10281085,10279961-10280198,10279586-10279871,10279207-10279371,10278505-10278996,10278080-10278406	AT1G29370.1  CDS  gene_syn F15D2.28, F15D2_28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kinase-related  note kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1296 (InterPro:IPR009719); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29350.1); Has 13654 Blast hits to 7528 proteins in 391 species: Archae - 0; Bacteria - 391; Metazoa - 5624; Fungi - 1558; Plants - 888; Viruses - 71; Other Eukaryotes - 5122 (source: NCBI BLink).  protein_id AT1G29370.1p  transcript_id AT1G29370.1  protein_id AT1G29370.1p  transcript_id AT1G29370.1  
At1g29380	chr1:010284209	0.0	W/10284209-10284275,10284386-10284991,10285311-10285353,10285440-10285671	AT1G29380.1  CDS  gene_syn F15D2.1, F15D2_1  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30933.2); Has 72661 Blast hits to 25630 proteins in 1396 species: Archae - 121; Bacteria - 23698; Metazoa - 22516; Fungi - 4473; Plants - 9059; Viruses - 967; Other Eukaryotes - 11827 (source: NCBI BLink).  protein_id AT1G29380.1p  transcript_id AT1G29380.1  protein_id AT1G29380.1p  transcript_id AT1G29380.1  
At1g29390	chr1:010287514	0.0	C/10287514-10287668,10287173-10287268,10286982-10287046,10286659-10286728,10286409-10286574	AT1G29390.2  CDS  gene_syn COR314-TM2, F15D2.42  gene COR314-TM2  function encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Possibly targeted to thylakoid membrane.  go_process response to stress|GO:0006950||ISS  go_function molecular_function|GO:0003674||ND  product COR314-TM2  note COR314-TM2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cold acclimation WCOR413 (InterPro:IPR008892); BEST Arabidopsis thaliana protein match is: COR414-TM1 (TAIR:AT1G29395.1); Has 90 Blast hits to 89 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29390.2p  transcript_id AT1G29390.2  protein_id AT1G29390.2p  transcript_id AT1G29390.2  
At1g29390	chr1:010287736	0.0	C/10287736-10287878,10287514-10287654,10287173-10287268,10286982-10287046,10286659-10286728,10286409-10286574	AT1G29390.1  CDS  gene_syn COR314-TM2, F15D2.42  gene COR314-TM2  function encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Possibly targeted to thylakoid membrane.  go_component chloroplast|GO:0009507||IEA  go_process response to stress|GO:0006950||ISS  go_function molecular_function|GO:0003674||ND  product COR314-TM2  note COR314-TM2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cold acclimation WCOR413 (InterPro:IPR008892); BEST Arabidopsis thaliana protein match is: COR414-TM1 (TAIR:AT1G29395.1); Has 90 Blast hits to 89 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29390.1p  transcript_id AT1G29390.1  protein_id AT1G29390.1p  transcript_id AT1G29390.1  
At1g29395	chr1:010289397	0.0	C/10289397-10289539,10289176-10289313,10288935-10289030,10288742-10288806,10288604-10288673,10288345-10288510	AT1G29395.1  CDS  gene_syn COR414-TM1  gene COR414-TM1  function encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|12746512|ISS  go_process cold acclimation|GO:0009631|12746512|IEP  go_process response to abscisic acid stimulus|GO:0009737|12746512|IEP  go_process cellular response to water deprivation|GO:0042631|12746512|IEP  go_function molecular_function|GO:0003674||ND  product COR414-TM1  note COR414-TM1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cold acclimation, cellular response to water deprivation, response to abscisic acid stimulus; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cold acclimation WCOR413 (InterPro:IPR008892); BEST Arabidopsis thaliana protein match is: COR314-TM2 (TAIR:AT1G29390.1); Has 91 Blast hits to 90 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29395.1p  transcript_id AT1G29395.1  protein_id AT1G29395.1p  transcript_id AT1G29395.1  
At1g29400	chr1:010293570	0.0	C/10293570-10293696,10293054-10293493,10292798-10292956,10292589-10292705,10292346-10292497,10292175-10292263,10291194-10292097,10291015-10291099,10290867-10290935,10290600-10290782,10290393-10290470	AT1G29400.1  CDS  gene_syn AML5, ARABIDOPSIS MEI2-LIKE PROTEIN 5, F15D2.30, F15D2_30  gene AML5  function A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML5 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. Among mei2-like genes, AML5 is the transcript with highest frequency of alternative splicing. Expression was detected during embryo development (heart and torpedo stage) and in vegetative and floral apices.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_function RNA binding|GO:0003723||ISS  product AML5 (ARABIDOPSIS MEI2-LIKE PROTEIN 5); RNA binding / nucleic acid binding / nucleotide binding  note ARABIDOPSIS MEI2-LIKE PROTEIN 5 (AML5); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), RNA recognition motif 2 (InterPro:IPR007201), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: AML3 (ARABIDOPSIS MEI2-LIKE 3); RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT4G18120.2); Has 4835 Blast hits to 4269 proteins in 272 species: Archae - 4; Bacteria - 55; Metazoa - 2779; Fungi - 713; Plants - 677; Viruses - 0; Other Eukaryotes - 607 (source: NCBI BLink).  protein_id AT1G29400.1p  transcript_id AT1G29400.1  protein_id AT1G29400.1p  transcript_id AT1G29400.1  
At1g29400	chr1:010293570	0.0	C/10293570-10293696,10293054-10293493,10292798-10292956,10292589-10292705,10292346-10292497,10292175-10292263,10291194-10292097,10291015-10291099,10290867-10290935,10290600-10290782,10290393-10290470	AT1G29400.2  CDS  gene_syn AML5, ARABIDOPSIS MEI2-LIKE PROTEIN 5, F15D2.30, F15D2_30  gene AML5  function A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML5 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. Among mei2-like genes, AML5 is the transcript with highest frequency of alternative splicing. Expression was detected during embryo development (heart and torpedo stage) and in vegetative and floral apices.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_function RNA binding|GO:0003723||ISS  product AML5 (ARABIDOPSIS MEI2-LIKE PROTEIN 5); RNA binding / nucleic acid binding / nucleotide binding  note ARABIDOPSIS MEI2-LIKE PROTEIN 5 (AML5); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), RNA recognition motif 2 (InterPro:IPR007201), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: AML3 (ARABIDOPSIS MEI2-LIKE 3); RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT4G18120.2); Has 4835 Blast hits to 4269 proteins in 272 species: Archae - 4; Bacteria - 55; Metazoa - 2779; Fungi - 713; Plants - 677; Viruses - 0; Other Eukaryotes - 607 (source: NCBI BLink).  protein_id AT1G29400.2p  transcript_id AT1G29400.2  protein_id AT1G29400.2p  transcript_id AT1G29400.2  
At1g29410	chr1:010299921	0.0	C/10299921-10299930,10299581-10299643,10299092-10299456,10298705-10299001	AT1G29410.2  CDS  gene_syn F15D2.31, F15D2_31, PAI3, PHOSPHORIBOSYLANTHRANILATE ISOMERASE, phosphoribosylanthranilate isomerase 3  gene PAI3  function Encodes phosphoribosylanthranilate isomerase which catalyzes the third step in tryptophan biosynthesis.  go_component chloroplast|GO:0009507|7890741|IDA  go_process tryptophan biosynthetic process|GO:0000162|7773017|TAS  go_process multicellular organismal development|GO:0007275|11346937|IMP  go_process response to UV|GO:0009411|11346937|IEP  go_process response to abiotic stimulus|GO:0009628|11346937|IEP  go_process growth|GO:0040007|11346937|IMP  go_function phosphoribosylanthranilate isomerase activity|GO:0004640|7773017|IGI  go_function phosphoribosylanthranilate isomerase activity|GO:0004640|7773017|ISS  product PAI3 (phosphoribosylanthranilate isomerase 3); phosphoribosylanthranilate isomerase  note phosphoribosylanthranilate isomerase 3 (PAI3); FUNCTIONS IN: phosphoribosylanthranilate isomerase activity; INVOLVED IN: tryptophan biosynthetic process, multicellular organismal development, response to UV, growth, response to abiotic stimulus; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: N-(5&apos;phosphoribosyl)anthranilate isomerase (PRAI) (InterPro:IPR001240), Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: PAI1 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1); phosphoribosylanthranilate isomerase (TAIR:AT1G07780.4); Has 2554 Blast hits to 2554 proteins in 959 species: Archae - 25; Bacteria - 1683; Metazoa - 2; Fungi - 181; Plants - 51; Viruses - 0; Other Eukaryotes - 612 (source: NCBI BLink).  protein_id AT1G29410.2p  transcript_id AT1G29410.2  protein_id AT1G29410.2p  transcript_id AT1G29410.2  
At1g29410	chr1:010299921	0.0	C/10299921-10299930,10299581-10299643,10299092-10299456,10298838-10299001,10298662-10298701	AT1G29410.1  CDS  gene_syn F15D2.31, F15D2_31, PAI3, PHOSPHORIBOSYLANTHRANILATE ISOMERASE, phosphoribosylanthranilate isomerase 3  gene PAI3  function Encodes phosphoribosylanthranilate isomerase which catalyzes the third step in tryptophan biosynthesis.  go_component chloroplast|GO:0009507|7890741|IDA  go_process tryptophan biosynthetic process|GO:0000162|7773017|TAS  go_process multicellular organismal development|GO:0007275|11346937|IMP  go_process response to UV|GO:0009411|11346937|IEP  go_process response to abiotic stimulus|GO:0009628|11346937|IEP  go_process growth|GO:0040007|11346937|IMP  go_function phosphoribosylanthranilate isomerase activity|GO:0004640|7773017|IGI  go_function phosphoribosylanthranilate isomerase activity|GO:0004640|7773017|ISS  product PAI3 (phosphoribosylanthranilate isomerase 3); phosphoribosylanthranilate isomerase  note phosphoribosylanthranilate isomerase 3 (PAI3); FUNCTIONS IN: phosphoribosylanthranilate isomerase activity; INVOLVED IN: tryptophan biosynthetic process, multicellular organismal development, response to UV, growth, response to abiotic stimulus; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: N-(5&apos;phosphoribosyl)anthranilate isomerase (PRAI) (InterPro:IPR001240), Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: PAI1 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1); phosphoribosylanthranilate isomerase (TAIR:AT1G07780.4); Has 2542 Blast hits to 2542 proteins in 951 species: Archae - 25; Bacteria - 1667; Metazoa - 2; Fungi - 181; Plants - 51; Viruses - 0; Other Eukaryotes - 616 (source: NCBI BLink).  protein_id AT1G29410.1p  transcript_id AT1G29410.1  protein_id AT1G29410.1p  transcript_id AT1G29410.1  
At1g29418	chr1:010300886	0.0	W/10300886-10301152	AT1G29418.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G29418.1p  transcript_id AT1G29418.1  protein_id AT1G29418.1p  transcript_id AT1G29418.1  
At1g29420	chr1:010301483	0.0	C/10301483-10301908	AT1G29420.1  CDS  gene_syn F15D2.32, F15D2_32  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: SAUR68 (SMALL AUXIN UPREGULATED 68) (TAIR:AT1G29510.1); Has 372 Blast hits to 362 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 372; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29420.1p  transcript_id AT1G29420.1  protein_id AT1G29420.1p  transcript_id AT1G29420.1  
At1g29430	chr1:010302801	0.0	C/10302801-10303226	AT1G29430.1  CDS  gene_syn F15D2.2, F15D2_2  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT5G27780.1); Has 320 Blast hits to 311 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 320; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29430.1p  transcript_id AT1G29430.1  protein_id AT1G29430.1p  transcript_id AT1G29430.1  
At1g29440	chr1:010304571	0.0	C/10304571-10304996	AT1G29440.1  CDS  gene_syn F15D2.3, F15D2_3  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: SAUR68 (SMALL AUXIN UPREGULATED 68) (TAIR:AT1G29510.1); Has 327 Blast hits to 317 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 327; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29440.1p  transcript_id AT1G29440.1  protein_id AT1G29440.1p  transcript_id AT1G29440.1  
At1g29450	chr1:010305981	0.0	C/10305981-10306406	AT1G29450.1  CDS  gene_syn F15D2.4, F15D2_4  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive protein, putative  note auxin-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT1G29500.1); Has 339 Blast hits to 329 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 339; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29450.1p  transcript_id AT1G29450.1  protein_id AT1G29450.1p  transcript_id AT1G29450.1  
At1g29460	chr1:010307609	0.0	C/10307609-10308055	AT1G29460.1  CDS  gene_syn F15D2.35, F15D2_35  go_component mitochondrion|GO:0005739||IEA  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive protein, putative  note auxin-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: mitochondrion; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29440.1); Has 389 Blast hits to 380 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 389; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29460.1p  transcript_id AT1G29460.1  protein_id AT1G29460.1p  transcript_id AT1G29460.1  
At1g29465	chr1:010309626	0.0	W/10309626-10309736	AT1G29465.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29465.1p  transcript_id AT1G29465.1  protein_id AT1G29465.1p  transcript_id AT1G29465.1  
At1g29470	chr1:010312458	0.0	C/10312458-10313369,10312205-10312354,10311846-10312116,10311648-10311758,10311382-10311556,10311023-10311292,10310743-10310937,10310424-10310652	AT1G29470.1  CDS  gene_syn F15D2.5, F15D2_5  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  product dehydration-responsive protein-related  note dehydration-responsive protein-related; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive protein-related (TAIR:AT2G34300.2); Has 60693 Blast hits to 25760 proteins in 1331 species: Archae - 209; Bacteria - 12823; Metazoa - 19500; Fungi - 5083; Plants - 2714; Viruses - 653; Other Eukaryotes - 19711 (source: NCBI BLink).  protein_id AT1G29470.1p  transcript_id AT1G29470.1  protein_id AT1G29470.1p  transcript_id AT1G29470.1  
At1g29470	chr1:010312458	0.0	C/10312458-10313369,10312205-10312354,10311846-10312116,10311648-10311758,10311382-10311556,10311023-10311292,10310743-10310937,10310424-10310652	AT1G29470.2  CDS  gene_syn F15D2.5, F15D2_5  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  product dehydration-responsive protein-related  note dehydration-responsive protein-related; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive protein-related (TAIR:AT2G34300.2); Has 60693 Blast hits to 25760 proteins in 1331 species: Archae - 209; Bacteria - 12823; Metazoa - 19500; Fungi - 5083; Plants - 2714; Viruses - 653; Other Eukaryotes - 19711 (source: NCBI BLink).  protein_id AT1G29470.2p  transcript_id AT1G29470.2  protein_id AT1G29470.2p  transcript_id AT1G29470.2  
At1g29475	chr1:010315834	0.0	W/10315834-10317528	AT1G29475.1  mRNA_TE_gene  pseudo  gene_syn F15D2.41  note Transposable element gene, copia-like retrotransposon family, has a 1.8e-91 P-value blast match to gb|AAO73521.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At1g29480	chr1:010317936	0.0	W/10317936-10318109,10318208-10318711	AT1G29480.1  CDS  gene_syn F15D2.6, F15D2_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 10 Blast hits to 10 proteins in 4 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G29480.1p  transcript_id AT1G29480.1  protein_id AT1G29480.1p  transcript_id AT1G29480.1  
At1g29490	chr1:010319835	0.0	W/10319835-10320143	AT1G29490.1  CDS  gene_syn F15D2.7, F15D2_7  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; EXPRESSED IN: petal, male gametophyte, sepal, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29420.1); Has 338 Blast hits to 328 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 338; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29490.1p  transcript_id AT1G29490.1  protein_id AT1G29490.1p  transcript_id AT1G29490.1  
At1g29500	chr1:010321290	0.0	W/10321290-10321697	AT1G29500.1  CDS  gene_syn F15D2.8, F15D2_8  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleolus|GO:0005730|15610358|IDA  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive protein, putative  note auxin-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT1G29450.1); Has 431 Blast hits to 421 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 431; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29500.1p  transcript_id AT1G29500.1  protein_id AT1G29500.1p  transcript_id AT1G29500.1  
At1g29510	chr1:010322683	0.0	W/10322683-10323114	AT1G29510.1  CDS  gene_syn F15D2.9, F15D2_9, SAUR68, SMALL AUXIN UPREGULATED 68  gene SAUR68  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product SAUR68 (SMALL AUXIN UPREGULATED 68)  note SMALL AUXIN UPREGULATED 68 (SAUR68); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29440.1); Has 358 Blast hits to 348 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 358; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29510.1p  transcript_id AT1G29510.1  protein_id AT1G29510.1p  transcript_id AT1G29510.1  
At1g29520	chr1:010323735	0.0	W/10323735-10323861,10324000-10324219,10324298-10324343,10324442-10324525	AT1G29520.1  CDS  gene_syn F15D2.10, F15D2_10  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product AWPM-19-like membrane family protein  note AWPM-19-like membrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AWPM-19-like (InterPro:IPR008390); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46530.1); Has 99 Blast hits to 99 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29520.1p  transcript_id AT1G29520.1  protein_id AT1G29520.1p  transcript_id AT1G29520.1  
At1g29530	chr1:010326576	0.0	C/10326576-10326651,10325725-10326266,10325553-10325645	AT1G29530.1  CDS  gene_syn F15D2.11, F15D2_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34310.3); Has 62 Blast hits to 61 proteins in 19 species: Archae - 2; Bacteria - 4; Metazoa - 10; Fungi - 8; Plants - 33; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G29530.1p  transcript_id AT1G29530.1  protein_id AT1G29530.1p  transcript_id AT1G29530.1  
At1g29540	chr1:010327269	0.0	W/10327269-10327382,10327475-10327846	AT1G29540.1  CDS  gene_syn F15D2.12, F15D2_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34330.1); Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29540.1p  transcript_id AT1G29540.1  protein_id AT1G29540.1p  transcript_id AT1G29540.1  
At1g29550	chr1:010330514	0.0	W/10330514-10330827,10331230-10331395,10331491-10331616,10331898-10331963,10332044-10332094	AT1G29550.1  CDS  gene_syn F15D2.13, F15D2_13  go_component cytoplasm|GO:0005737||IEA  go_process translational initiation|GO:0006413||IEA  go_function RNA binding|GO:0003723||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_component cytoplasm|GO:0005737||ISS  go_process translational initiation|GO:0006413||ISS  go_function RNA binding|GO:0003723||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product eukaryotic translation initiation factor 4E, putative / eIF-4E, putative / eIF4E, putative / mRNA cap-binding protein, putative  note eukaryotic translation initiation factor 4E, putative / eIF-4E, putative / eIF4E, putative / mRNA cap-binding protein, putative; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cytoplasm; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Eukaryotic translation initiation factor 4E (eIF-4E) (InterPro:IPR001040); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 4E, putative / eIF-4E, putative / eIF4E, putative / mRNA cap-binding protein, putative (TAIR:AT1G29590.1); Has 1315 Blast hits to 1315 proteins in 203 species: Archae - 0; Bacteria - 0; Metazoa - 605; Fungi - 223; Plants - 238; Viruses - 0; Other Eukaryotes - 249 (source: NCBI BLink).  protein_id AT1G29550.1p  transcript_id AT1G29550.1  protein_id AT1G29550.1p  transcript_id AT1G29550.1  
At1g29560	chr1:010332647	0.0	W/10332647-10332715,10332799-10332951,10333170-10333361,10333431-10333748,10333822-10333857,10333938-10334024,10334106-10334177,10334253-10334381,10334537-10334620,10334705-10334941,10335034-10335285,10335421-10335510	AT1G29560.1  CDS  gene_syn F15D2.14, F15D2_14  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product nucleic acid binding / zinc ion binding  note nucleic acid binding / zinc ion binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger protein-related (TAIR:AT1G29570.1); Has 9629 Blast hits to 6369 proteins in 427 species: Archae - 10; Bacteria - 522; Metazoa - 4464; Fungi - 543; Plants - 269; Viruses - 72; Other Eukaryotes - 3749 (source: NCBI BLink).  protein_id AT1G29560.1p  transcript_id AT1G29560.1  protein_id AT1G29560.1p  transcript_id AT1G29560.1  
At1g29560	chr1:010333467	0.0	W/10333467-10333748,10333849-10333857,10333938-10334024,10334106-10334177,10334253-10334381,10334537-10334620,10334705-10334941,10335034-10335285,10335421-10335510	AT1G29560.2  CDS  gene_syn F15D2.14, F15D2_14  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product nucleic acid binding / zinc ion binding  note nucleic acid binding / zinc ion binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger protein-related (TAIR:AT1G29570.1); Has 9868 Blast hits to 6255 proteins in 427 species: Archae - 12; Bacteria - 532; Metazoa - 4554; Fungi - 541; Plants - 152; Viruses - 81; Other Eukaryotes - 3996 (source: NCBI BLink).  protein_id AT1G29560.2p  transcript_id AT1G29560.2  protein_id AT1G29560.2p  transcript_id AT1G29560.2  
At1g29570	chr1:010335910	0.0	W/10335910-10335990,10336078-10336126,10336278-10336405,10336485-10336508,10336723-10336761,10336838-10336957,10337028-10337105,10337189-10337428,10337556-10337660,10337753-10337854	AT1G29570.1  CDS  gene_syn F15D2.36, F15D2_36  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product zinc finger protein-related  note zinc finger protein-related; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: nucleic acid binding / zinc ion binding (TAIR:AT1G29560.1); Has 36841 Blast hits to 17048 proteins in 927 species: Archae - 40; Bacteria - 3548; Metazoa - 16010; Fungi - 2827; Plants - 1388; Viruses - 207; Other Eukaryotes - 12821 (source: NCBI BLink).  protein_id AT1G29570.1p  transcript_id AT1G29570.1  protein_id AT1G29570.1p  transcript_id AT1G29570.1  
At1g29580	chr1:010338443	0.0	W/10338443-10338532,10338622-10338684,10338940-10338998,10339089-10339146	AT1G29580.1  CDS  gene_syn F15D2.15, F15D2_15  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 13 Blast hits to 13 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29580.1p  transcript_id AT1G29580.1  protein_id AT1G29580.1p  transcript_id AT1G29580.1  
At1g29590	chr1:010339937	0.0	W/10339937-10340385,10340716-10340881,10340975-10341100,10341430-10341495,10341578-10341628	AT1G29590.1  CDS  gene_syn F15D2.16, F15D2_16  go_component cytoplasm|GO:0005737||IEA  go_process translational initiation|GO:0006413||IEA  go_function RNA binding|GO:0003723||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_component cytoplasm|GO:0005737||ISS  go_process translational initiation|GO:0006413||ISS  go_function RNA binding|GO:0003723||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product eukaryotic translation initiation factor 4E, putative / eIF-4E, putative / eIF4E, putative / mRNA cap-binding protein, putative  note eukaryotic translation initiation factor 4E, putative / eIF-4E, putative / eIF4E, putative / mRNA cap-binding protein, putative; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Eukaryotic translation initiation factor 4E (eIF-4E) (InterPro:IPR001040); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 4E, putative / eIF-4E, putative / eIF4E, putative / mRNA cap-binding protein, putative (TAIR:AT1G29550.1); Has 1303 Blast hits to 1303 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 607; Fungi - 223; Plants - 238; Viruses - 0; Other Eukaryotes - 235 (source: NCBI BLink).  protein_id AT1G29590.1p  transcript_id AT1G29590.1  protein_id AT1G29590.1p  transcript_id AT1G29590.1  
At1g29600	chr1:010344046	0.0	W/10344046-10344168,10344250-10344417,10344497-10344685,10344773-10344811,10344995-10345075,10345216-10345293,10345372-10345473,10345568-10345651	AT1G29600.1  CDS  gene_syn F15D2.17, F15D2_17  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc finger (CCCH-type) family protein  note zinc finger (CCCH-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: ZFN2 (ZINC FINGER NUCLEASE 2); DNA binding / nuclease/ nucleic acid binding (TAIR:AT2G32930.1); Has 462 Blast hits to 181 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 5; Plants - 449; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G29600.1p  transcript_id AT1G29600.1  protein_id AT1G29600.1p  transcript_id AT1G29600.1  
At1g29610	chr1:010345763	0.0	W/10345763-10346002,10346103-10346243	AT1G29610.1  CDS  gene_syn F15D2.18, F15D2_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; BEST Arabidopsis thaliana protein match is: zinc finger protein-related (TAIR:AT1G29570.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29610.1p  transcript_id AT1G29610.1  protein_id AT1G29610.1p  transcript_id AT1G29610.1  
At1g29620	chr1:010347363	0.0	W/10347363-10347424,10347529-10347585,10347680-10347798,10348634-10348683,10348865-10349017	AT1G29620.1  CDS  gene_syn F15D2.19, F15D2_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32720.1); Has 11 Blast hits to 11 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29620.1p  transcript_id AT1G29620.1  protein_id AT1G29620.1p  transcript_id AT1G29620.1  
At1g29630	chr1:010349587	0.0	W/10349587-10349747,10350117-10350236,10350355-10350478,10350579-10350716,10350861-10351070,10351245-10351420,10351506-10351578,10351674-10351797,10351985-10352145,10352222-10352276,10352365-10352891,10352992-10353037,10353149-10353359,10353457-10353538	AT1G29630.2  CDS  gene_syn F15D2.37, F15D2_37  go_process DNA repair|GO:0006281||IEA  go_function DNA binding|GO:0003677||IEA  go_function catalytic activity|GO:0003824||IEA  go_function nuclease activity|GO:0004518||IEA  go_process DNA repair|GO:0006281||ISS  go_function nuclease activity|GO:0004518||ISS  product DNA binding / catalytic/ nuclease  note DNA binding / catalytic/ nuclease; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG I (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: exonuclease, putative (TAIR:AT1G18090.2); Has 1812 Blast hits to 1629 proteins in 272 species: Archae - 190; Bacteria - 0; Metazoa - 554; Fungi - 461; Plants - 125; Viruses - 28; Other Eukaryotes - 454 (source: NCBI BLink).  protein_id AT1G29630.2p  transcript_id AT1G29630.2  protein_id AT1G29630.2p  transcript_id AT1G29630.2  
At1g29630	chr1:010349587	0.0	W/10349587-10349747,10350117-10350236,10350355-10350478,10350579-10350716,10351245-10351420,10351506-10351578,10351674-10351797,10351985-10352145,10352222-10352276,10352365-10352891,10352992-10353037,10353149-10353359,10353457-10353538	AT1G29630.1  CDS  gene_syn F15D2.37, F15D2_37  go_process DNA repair|GO:0006281||IEA  go_function nuclease activity|GO:0004518||IEA  go_process DNA repair|GO:0006281||ISS  go_function nuclease activity|GO:0004518||ISS  product nuclease  note nuclease; FUNCTIONS IN: nuclease activity; INVOLVED IN: DNA repair; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), XPG I (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: exonuclease, putative (TAIR:AT1G18090.2); Has 1708 Blast hits to 1461 proteins in 261 species: Archae - 194; Bacteria - 0; Metazoa - 542; Fungi - 468; Plants - 132; Viruses - 8; Other Eukaryotes - 364 (source: NCBI BLink).  protein_id AT1G29630.1p  transcript_id AT1G29630.1  protein_id AT1G29630.1p  transcript_id AT1G29630.1  
At1g29630	chr1:010350636	0.0	W/10350636-10350716,10350861-10351070,10351245-10351420,10351506-10351578,10351674-10351797,10351985-10352145,10352222-10352276,10352365-10352891,10352992-10353037,10353149-10353359,10353457-10353538	AT1G29630.3  CDS  gene_syn F15D2.37, F15D2_37  go_process DNA repair|GO:0006281||IEA  go_function DNA binding|GO:0003677||IEA  go_function catalytic activity|GO:0003824||IEA  go_function nuclease activity|GO:0004518||IEA  go_process DNA repair|GO:0006281||ISS  go_function nuclease activity|GO:0004518||ISS  product DNA binding / catalytic/ nuclease  note DNA binding / catalytic/ nuclease; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG I (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: exonuclease, putative (TAIR:AT1G18090.2); Has 759 Blast hits to 756 proteins in 166 species: Archae - 9; Bacteria - 0; Metazoa - 263; Fungi - 173; Plants - 74; Viruses - 9; Other Eukaryotes - 231 (source: NCBI BLink).  protein_id AT1G29630.3p  transcript_id AT1G29630.3  protein_id AT1G29630.3p  transcript_id AT1G29630.3  
At1g29640	chr1:010355959	0.0	C/10355959-10356381	AT1G29640.1  CDS  gene_syn F15D2.20, F15D2_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF584 (InterPro:IPR007608); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34340.1); Has 201 Blast hits to 201 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 201; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29640.1p  transcript_id AT1G29640.1  protein_id AT1G29640.1p  transcript_id AT1G29640.1  
At1g29650	chr1:010357606	0.0	W/10357606-10363195	AT1G29650.1  mRNA_TE_gene  pseudo  gene_syn F15D2.38, F15D2_38  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.5e-28 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At1g29660	chr1:010371955	0.0	W/10371955-10372198,10372359-10372483,10372595-10372840,10373029-10373284,10373401-10373624	AT1G29660.1  CDS  gene_syn F15D2.21, F15D2_21  go_component nucleus|GO:0005634|14617066|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: apoplast, nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT1G29670.1); Has 2112 Blast hits to 2093 proteins in 271 species: Archae - 0; Bacteria - 436; Metazoa - 1; Fungi - 65; Plants - 1585; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT1G29660.1p  transcript_id AT1G29660.1  protein_id AT1G29660.1p  transcript_id AT1G29660.1  
At1g29670	chr1:010375843	0.0	W/10375843-10376086,10376200-10376324,10376429-10376674,10377146-10377398,10377494-10377717	AT1G29670.1  CDS  gene_syn F15D2.22, F15D2_22  go_component cell wall|GO:0005618|15593128|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: apoplast, cell wall, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT1G29660.1); Has 1995 Blast hits to 1979 proteins in 221 species: Archae - 0; Bacteria - 342; Metazoa - 1; Fungi - 54; Plants - 1578; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT1G29670.1p  transcript_id AT1G29670.1  protein_id AT1G29670.1p  transcript_id AT1G29670.1  
At1g29680	chr1:010378673	0.0	C/10378673-10378931,10378392-10378589,10377900-10378156	AT1G29680.1  CDS  gene_syn F15D2.23, F15D2_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1264 (InterPro:IPR010686); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45690.1); Has 188 Blast hits to 188 proteins in 83 species: Archae - 0; Bacteria - 84; Metazoa - 0; Fungi - 43; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29680.1p  transcript_id AT1G29680.1  protein_id AT1G29680.1p  transcript_id AT1G29680.1  
At1g29690	chr1:010381574	0.0	C/10381574-10381861,10380956-10381194,10380552-10380747,10380260-10380443,10380019-10380173,10379310-10379933	AT1G29690.1  CDS  gene_syn CAD1, F15D2.24, F15D2_24, constitutively activated cell death 1  gene CAD1  function Encodes a protein containing a domain with significant homology to the MACPF (membrane attack complex and perforin) domain of complements and perforin proteins that are involved in innate immunity in animals. Transgenic <i>cad1-1</i> mutant plants show lesions seen in the hypersensitive response, as well as a spontaneous activation of expression of pathogenesis-related genes and leading to a 32-fold increase in salicylic acid (SA). CAD1 is postulated to act as a negative regulator controlling SA-mediated pathway of programmed cell death in plant immunity.  go_component cellular_component|GO:0005575||ND  go_process immune response|GO:0006955|15799997|IMP  go_process cell death|GO:0008219|15799997|IMP  product CAD1 (constitutively activated cell death 1)  note constitutively activated cell death 1 (CAD1); INVOLVED IN: immune response, cell death; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Membrane attack complex component/perforin/complement C9 (InterPro:IPR001862); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24290.2); Has 122 Blast hits to 121 proteins in 18 species: Archae - 0; Bacteria - 2; Metazoa - 9; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G29690.1p  transcript_id AT1G29690.1  protein_id AT1G29690.1p  transcript_id AT1G29690.1  
At1g29700	chr1:010386634	0.0	C/10386634-10386906,10386421-10386546,10386105-10386263,10385875-10385993,10385570-10385761,10385380-10385470,10385196-10385288	AT1G29700.1  CDS  gene_syn F15D2.25  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 321 Blast hits to 321 proteins in 85 species: Archae - 0; Bacteria - 142; Metazoa - 0; Fungi - 2; Plants - 20; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).  protein_id AT1G29700.1p  transcript_id AT1G29700.1  protein_id AT1G29700.1p  transcript_id AT1G29700.1  
At1g29710	chr1:010387673	0.0	W/10387673-10389100	AT1G29710.1  CDS  gene_syn T3M22.4, T3M22_4  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G34370.1); Has 6277 Blast hits to 3387 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 6242; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G29710.1p  transcript_id AT1G29710.1  protein_id AT1G29710.1p  transcript_id AT1G29710.1  
At1g29715	chr1:010389294	0.0	C/10389294-10392668	AT1G29715.1  pseudogenic_transcript  pseudo  gene_syn T3M22.7  note pseudogene, putative receptor-related serine/threonine kinase, blastp match of 67% identity and 2.6e-98 P-value to GP|8671882|gb|AAF78445.1|AC018748_24|AC018748 Contains a weak similarity to disease resistance protein (cf-5) gene from Lycopersicon esculentum gb|AF053993 and contains multiple leucine rich PF|00560 repeats and protein kinase PF|00069 domain. EST gb|T0-TRUNCATED-  
At1g29720	chr1:010394961	0.0	C/10394961-10395081,10394617-10394848,10394385-10394535,10393894-10394292	AT1G29720.1  CDS  gene_syn CELLULOSE SYNTHASE LIKE D2, CLSD2, T3M22.6, T3M22_6  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: kinase (TAIR:AT1G29740.1); Has 78271 Blast hits to 77498 proteins in 1979 species: Archae - 42; Bacteria - 6853; Metazoa - 34055; Fungi - 6262; Plants - 17602; Viruses - 390; Other Eukaryotes - 13067 (source: NCBI BLink).  protein_id AT1G29720.1p  transcript_id AT1G29720.1  protein_id AT1G29720.1p  transcript_id AT1G29720.1  
At1g29720	chr1:010396255	0.0	C/10396255-10396326,10395957-10396152,10395698-10395718,10395447-10395581,10395245-10395363,10394961-10395171,10394617-10394848,10394385-10394535,10393894-10394292	AT1G29720.2  CDS  gene_syn CELLULOSE SYNTHASE LIKE D2, CLSD2, T3M22.6, T3M22_6  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: kinase (TAIR:AT1G29740.1).  protein_id AT1G29720.2p  transcript_id AT1G29720.2  protein_id AT1G29720.2p  transcript_id AT1G29720.2  
At1g29724	chr1:010400413	0.0	C/10400413-10400452,10399383-10399572,10399219-10399290,10398980-10399051,10398830-10398901,10398674-10398745,10398491-10398562,10398352-10398384,10398221-10398292,10398062-10398133,10397913-10397978,10397740-10397815	AT1G29724.1  CDS  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: kinase (TAIR:AT1G29740.1); Has 37057 Blast hits to 11678 proteins in 571 species: Archae - 15; Bacteria - 2005; Metazoa - 4198; Fungi - 249; Plants - 28173; Viruses - 0; Other Eukaryotes - 2417 (source: NCBI BLink).  protein_id AT1G29724.1p  transcript_id AT1G29724.1  protein_id AT1G29724.1p  transcript_id AT1G29724.1  
At1g29730	chr1:010405745	0.0	C/10405745-10405874,10405469-10405646,10405306-10405377,10405137-10405208,10404985-10405056,10404814-10404885,10404636-10404707,10404471-10404542,10404306-10404377,10404130-10404198,10403963-10404034,10403818-10403880,10403656-10403724,10403512-10403562,10403391-10403432,10403272-10403315,10402799-10403187,10402512-10402707,10402387-10402428,10401982-10402100,10401686-10401896,10401361-10401595,10401127-10401280,10400710-10401051	AT1G29730.1  CDS  gene_syn T3M22.3  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function kinase activity|GO:0016301||ISS  product ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591); BEST Arabidopsis thaliana protein match is: kinase (TAIR:AT1G29740.1); Has 129909 Blast hits to 97029 proteins in 3358 species: Archae - 75; Bacteria - 9779; Metazoa - 46063; Fungi - 7311; Plants - 48462; Viruses - 421; Other Eukaryotes - 17798 (source: NCBI BLink).  protein_id AT1G29730.1p  transcript_id AT1G29730.1  protein_id AT1G29730.1p  transcript_id AT1G29730.1  
At1g29740	chr1:010412868	0.0	C/10412868-10412997,10412587-10412764,10412436-10412507,10412272-10412343,10412121-10412192,10411943-10412014,10411757-10411828,10411597-10411668,10411444-10411515,10411287-10411355,10411117-10411188,10410960-10411022,10410808-10410876,10410662-10410712,10410543-10410584,10410423-10410466,10409945-10410333,10409657-10409852,10409559-10409579,10409297-10409455,10409131-10409222,10408835-10409045,10408481-10408712,10408242-10408395,10407817-10408151,10407379-10407604	AT1G29740.1  CDS  gene_syn F1N18.20, F1N18_20  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product kinase  note kinase; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT1G29730.1); Has 129099 Blast hits to 97103 proteins in 3362 species: Archae - 78; Bacteria - 9723; Metazoa - 44899; Fungi - 7533; Plants - 48679; Viruses - 430; Other Eukaryotes - 17757 (source: NCBI BLink).  protein_id AT1G29740.1p  transcript_id AT1G29740.1  protein_id AT1G29740.1p  transcript_id AT1G29740.1  
At1g29750	chr1:010419545	0.0	C/10419545-10419813,10419280-10419348,10419116-10419184,10418973-10419041,10418602-10418673,10418416-10418487,10418256-10418327,10418108-10418179,10417927-10417998,10417770-10417841,10417533-10417601,10417379-10417444,10417197-10417259,10417062-10417106,10416846-10416889,10416208-10416596,10415933-10416128,10415670-10415816,10415418-10415536,10415119-10415329,10414789-10415026,10414541-10414691,10414071-10414445	AT1G29750.1  CDS  gene_syn F1N18.19, F1N18_19, RECEPTOR-LIKE KINASE IN FLOWERS 1, RECEPTOR-LIKE SERINE/THREONINE KINASE, RKF1  gene RKF1  function Receptor-like serine/threonine kinase (RKF1). The putative extracellular domain of the RKF1 protein contains 13 tandem repeats of leucine-rich sequences. Expressed in early flower primordial, stamen, and pollen grains.  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674|9687063|IDA  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function receptor signaling protein serine/threonine kinase activity|GO:0004702|9687063|ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product RKF1 (RECEPTOR-LIKE KINASE IN FLOWERS 1); ATP binding / kinase/ protein serine/threonine kinase/ receptor signaling protein serine/threonine kinase  note RECEPTOR-LIKE KINASE IN FLOWERS 1 (RKF1); FUNCTIONS IN: protein serine/threonine kinase activity, receptor signaling protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / protein kinase family protein (TAIR:AT3G14840.2); Has 115801 Blast hits to 90810 proteins in 3173 species: Archae - 71; Bacteria - 8927; Metazoa - 40797; Fungi - 6856; Plants - 42623; Viruses - 366; Other Eukaryotes - 16161 (source: NCBI BLink).  protein_id AT1G29750.1p  transcript_id AT1G29750.1  protein_id AT1G29750.1p  transcript_id AT1G29750.1  
At1g29750	chr1:010420331	0.0	C/10420331-10420469,10419545-10419719,10419280-10419348,10419116-10419184,10418973-10419041,10418602-10418673,10418416-10418487,10418256-10418327,10418108-10418179,10417927-10417998,10417770-10417841,10417533-10417601,10417379-10417444,10417197-10417259,10417062-10417106,10416846-10416889,10416208-10416596,10415933-10416128,10415670-10415816,10415418-10415536,10415119-10415329,10414789-10415026,10414541-10414691,10414071-10414445	AT1G29750.2  CDS  gene_syn F1N18.19, F1N18_19, RECEPTOR-LIKE KINASE IN FLOWERS 1, RECEPTOR-LIKE SERINE/THREONINE KINASE, RKF1  gene RKF1  function Receptor-like serine/threonine kinase (RKF1). The putative extracellular domain of the RKF1 protein contains 13 tandem repeats of leucine-rich sequences. Expressed in early flower primordial, stamen, and pollen grains.  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674|9687063|IDA  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function receptor signaling protein serine/threonine kinase activity|GO:0004702|9687063|ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product RKF1 (RECEPTOR-LIKE KINASE IN FLOWERS 1); ATP binding / kinase/ protein serine/threonine kinase/ receptor signaling protein serine/threonine kinase  note RECEPTOR-LIKE KINASE IN FLOWERS 1 (RKF1); FUNCTIONS IN: protein serine/threonine kinase activity, receptor signaling protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / protein kinase family protein (TAIR:AT3G14840.2); Has 115759 Blast hits to 90809 proteins in 3173 species: Archae - 71; Bacteria - 8917; Metazoa - 40797; Fungi - 6856; Plants - 42592; Viruses - 366; Other Eukaryotes - 16160 (source: NCBI BLink).  protein_id AT1G29750.2p  transcript_id AT1G29750.2  protein_id AT1G29750.2p  transcript_id AT1G29750.2  
At1g29760	chr1:010422381	0.0	W/10422381-10423490,10423646-10424116	AT1G29760.1  CDS  gene_syn CELLULOSE SYNTHASE LIKE D4, CLSD4, F1N18.18, F1N18_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Adipose-regulatory protein, Seipin (InterPro:IPR009617); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34380.1); Has 396 Blast hits to 327 proteins in 54 species: Archae - 0; Bacteria - 233; Metazoa - 115; Fungi - 10; Plants - 31; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G29760.1p  transcript_id AT1G29760.1  protein_id AT1G29760.1p  transcript_id AT1G29760.1  
At1g29770	chr1:010424806	0.0	W/10424806-10425642	AT1G29770.1  CDS  gene_syn CELLULOSE SYNTHASE LIKE D1, CLSD1, F1N18.17, F1N18_17  go_function phosphatase activity|GO:0016791||IEA  go_process biological_process|GO:0008150||ND  product NLI interacting factor (NIF) family protein  note NLI interacting factor (NIF) family protein; FUNCTIONS IN: phosphatase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Dullard-like phosphatase domain (InterPro:IPR011948), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: NLI interacting factor (NIF) family protein (TAIR:AT1G29780.1); Has 1909 Blast hits to 1909 proteins in 191 species: Archae - 0; Bacteria - 12; Metazoa - 723; Fungi - 344; Plants - 165; Viruses - 20; Other Eukaryotes - 645 (source: NCBI BLink).  protein_id AT1G29770.1p  transcript_id AT1G29770.1  protein_id AT1G29770.1p  transcript_id AT1G29770.1  
At1g29780	chr1:010426950	0.0	W/10426950-10427615	AT1G29780.1  CDS  gene_syn CELLULOSE SYNTHASE LIKE D5, CLSD5, F1N18.16, F1N18_16  go_component mitochondrion|GO:0005739||IEA  go_function phosphatase activity|GO:0016791||IEA  product NLI interacting factor (NIF) family protein  note NLI interacting factor (NIF) family protein; FUNCTIONS IN: phosphatase activity; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Dullard-like phosphatase domain (InterPro:IPR011948), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: NLI interacting factor (NIF) family protein (TAIR:AT1G29770.1); Has 1933 Blast hits to 1933 proteins in 182 species: Archae - 0; Bacteria - 12; Metazoa - 752; Fungi - 320; Plants - 172; Viruses - 9; Other Eukaryotes - 668 (source: NCBI BLink).  protein_id AT1G29780.1p  transcript_id AT1G29780.1  protein_id AT1G29780.1p  transcript_id AT1G29780.1  
At1g29785	chr1:010427613	0.0	C/10427613-10429083	AT1G29785.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G29780  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G29785.2  
At1g29785	chr1:010428509	0.0	C/10428509-10429133	AT1G29785.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G29780  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G29785.1  
At1g29790	chr1:010430025	0.0	W/10430025-10431161	AT1G29790.1  CDS  gene_syn CELLULOSE SYNTHASE LIKE C5, CLSC5, F1N18.26, F1N18_26  go_component plasma membrane|GO:0005886|17644812|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: methyltransferase (TAIR:AT5G40830.2); Has 127 Blast hits to 127 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29790.1p  transcript_id AT1G29790.1  protein_id AT1G29790.1p  transcript_id AT1G29790.1  
At1g29790	chr1:010430025	0.0	W/10430025-10431161	AT1G29790.2  CDS  gene_syn CELLULOSE SYNTHASE LIKE C5, CLSC5, F1N18.26, F1N18_26  go_component plasma membrane|GO:0005886|17644812|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: methyltransferase (TAIR:AT5G40830.2); Has 127 Blast hits to 127 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29790.2p  transcript_id AT1G29790.2  protein_id AT1G29790.2p  transcript_id AT1G29790.2  
At1g29800	chr1:010432736	0.0	W/10432736-10432738,10433086-10433991,10434155-10434355,10434430-10434625,10434862-10435042,10435132-10435177	AT1G29800.1  CDS  gene_syn F1N18.15, F1N18_15  go_process signal transduction|GO:0007165|15358268|ISS  go_function zinc ion binding|GO:0008270||ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product phosphoinositide binding / zinc ion binding  note phosphoinositide binding / zinc ion binding; FUNCTIONS IN: phosphoinositide binding, zinc ion binding; INVOLVED IN: signal transduction; CONTAINS InterPro DOMAIN/s: Zinc finger, FYVE-type (InterPro:IPR000306), Zinc finger, FYVE-related (InterPro:IPR017455), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Ysc84 actin-binding domain (InterPro:IPR007461); BEST Arabidopsis thaliana protein match is: zinc finger (FYVE type) family protein (TAIR:AT3G43230.1); Has 2856 Blast hits to 2789 proteins in 224 species: Archae - 0; Bacteria - 155; Metazoa - 1698; Fungi - 436; Plants - 186; Viruses - 3; Other Eukaryotes - 378 (source: NCBI BLink).  protein_id AT1G29800.1p  transcript_id AT1G29800.1  protein_id AT1G29800.1p  transcript_id AT1G29800.1  
At1g29800	chr1:010432736	0.0	W/10432736-10432738,10433086-10433991,10434155-10434355,10434430-10434625,10434862-10435046	AT1G29800.2  CDS  gene_syn F1N18.15, F1N18_15  go_process signal transduction|GO:0007165|15358268|ISS  go_function zinc ion binding|GO:0008270||ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product phosphoinositide binding / zinc ion binding  note phosphoinositide binding / zinc ion binding; FUNCTIONS IN: phosphoinositide binding, zinc ion binding; INVOLVED IN: signal transduction; CONTAINS InterPro DOMAIN/s: Zinc finger, FYVE-type (InterPro:IPR000306), Zinc finger, FYVE-related (InterPro:IPR017455), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Ysc84 actin-binding domain (InterPro:IPR007461); BEST Arabidopsis thaliana protein match is: zinc finger (FYVE type) family protein (TAIR:AT3G43230.1); Has 2855 Blast hits to 2788 proteins in 224 species: Archae - 0; Bacteria - 155; Metazoa - 1698; Fungi - 436; Plants - 186; Viruses - 3; Other Eukaryotes - 377 (source: NCBI BLink).  protein_id AT1G29800.2p  transcript_id AT1G29800.2  protein_id AT1G29800.2p  transcript_id AT1G29800.2  
At1g29810	chr1:010437359	0.0	C/10437359-10437406,10437219-10437265,10436862-10436959,10436199-10436284,10436001-10436124,10435807-10435875,10435606-10435697	AT1G29810.1  CDS  gene_syn CELLULOSE SYNTHASE LIKE B5, F1N18.100, F1N18_100  go_process tetrahydrobiopterin biosynthetic process|GO:0006729||IEA  go_function 4-alpha-hydroxytetrahydrobiopterin dehydratase activity|GO:0008124||IEA  go_function dihydroxy-acid dehydratase activity|GO:0004160||ISS  product dehydratase family  note dehydratase family; FUNCTIONS IN: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity, dihydroxy-acid dehydratase activity; INVOLVED IN: tetrahydrobiopterin biosynthetic process; CONTAINS InterPro DOMAIN/s: Transcriptional coactivator/pterin dehydratase (InterPro:IPR001533); BEST Arabidopsis thaliana protein match is: 4-alpha-hydroxytetrahydrobiopterin dehydratase (TAIR:AT5G51110.1); Has 3240 Blast hits to 3238 proteins in 657 species: Archae - 39; Bacteria - 1216; Metazoa - 166; Fungi - 12; Plants - 43; Viruses - 0; Other Eukaryotes - 1764 (source: NCBI BLink).  protein_id AT1G29810.1p  transcript_id AT1G29810.1  protein_id AT1G29810.1p  transcript_id AT1G29810.1  
At1g29820	chr1:010438219	0.0	W/10438219-10438857,10439107-10439295,10439412-10439503,10439638-10439697,10439779-10439848,10439963-10440166,10440257-10440625	AT1G29820.1  CDS  gene_syn CELLULOSE SYNTHASE LIKE B4, CSLB4, F1N18.14, F1N18_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29830.1); Has 257 Blast hits to 257 proteins in 116 species: Archae - 0; Bacteria - 201; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G29820.1p  transcript_id AT1G29820.1  protein_id AT1G29820.1p  transcript_id AT1G29820.1  
At1g29820	chr1:010438219	0.0	W/10438219-10438857,10439107-10439295,10439412-10439503,10439638-10439697,10439779-10439848,10439963-10440166,10440257-10440625	AT1G29820.2  CDS  gene_syn CELLULOSE SYNTHASE LIKE B4, CSLB4, F1N18.14, F1N18_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29830.1); Has 257 Blast hits to 257 proteins in 116 species: Archae - 0; Bacteria - 201; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G29820.2p  transcript_id AT1G29820.2  protein_id AT1G29820.2p  transcript_id AT1G29820.2  
At1g29830	chr1:010441053	0.0	W/10441053-10441185,10442209-10442798,10443519-10443707,10443821-10443912,10444146-10444205,10444294-10444363,10444486-10444689,10444761-10445129	AT1G29830.3  CDS  gene_syn F1N18.13, F1N18_13  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29820.2).  protein_id AT1G29830.3p  transcript_id AT1G29830.3  protein_id AT1G29830.3p  transcript_id AT1G29830.3  
At1g29830	chr1:010442181	0.0	W/10442181-10442798,10443519-10443707,10443821-10443912,10444146-10444205,10444294-10444363,10444486-10444689,10444761-10444882,10444960-10444999	AT1G29830.2  CDS  gene_syn F1N18.13, F1N18_13  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29820.2); Has 71 Blast hits to 71 proteins in 26 species: Archae - 0; Bacteria - 32; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G29830.2p  transcript_id AT1G29830.2  protein_id AT1G29830.2p  transcript_id AT1G29830.2  
At1g29830	chr1:010442181	0.0	W/10442181-10442798,10443519-10443707,10443821-10443912,10444146-10444205,10444294-10444363,10444486-10444689,10444761-10445129	AT1G29830.1  CDS  gene_syn F1N18.13, F1N18_13  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29820.2); Has 152 Blast hits to 152 proteins in 65 species: Archae - 0; Bacteria - 106; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G29830.1p  transcript_id AT1G29830.1  protein_id AT1G29830.1p  transcript_id AT1G29830.1  
At1g29840	chr1:010447279	0.0	C/10447279-10447422,10446645-10446727,10446438-10446559,10446180-10446338,10446002-10446095,10445735-10445924	AT1G29840.1  CDS  gene_syn F1N18.12, F1N18_12  go_function catalytic activity|GO:0003824||ISS  product esterase/lipase/thioesterase family protein  note esterase/lipase/thioesterase family protein; FUNCTIONS IN: catalytic activity; BEST Arabidopsis thaliana protein match is: esterase/lipase/thioesterase family protein (TAIR:AT3G47560.1); Has 2153 Blast hits to 2152 proteins in 431 species: Archae - 25; Bacteria - 868; Metazoa - 5; Fungi - 50; Plants - 119; Viruses - 2; Other Eukaryotes - 1084 (source: NCBI BLink).  protein_id AT1G29840.1p  transcript_id AT1G29840.1  protein_id AT1G29840.1p  transcript_id AT1G29840.1  
At1g29850	chr1:010447866	0.0	W/10447866-10447868,10448680-10448745,10448846-10448907,10449005-10449069,10449180-10449271,10449409-10449480,10449598-10449630	AT1G29850.2  CDS  gene_syn F1N18.11, F1N18_11  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function double-stranded DNA binding|GO:0003690||ISS  product double-stranded DNA-binding family protein  note double-stranded DNA-binding family protein; FUNCTIONS IN: double-stranded DNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding TFAR19-related protein (InterPro:IPR002836); Has 498 Blast hits to 498 proteins in 233 species: Archae - 166; Bacteria - 0; Metazoa - 120; Fungi - 83; Plants - 30; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).  protein_id AT1G29850.2p  transcript_id AT1G29850.2  protein_id AT1G29850.2p  transcript_id AT1G29850.2  
At1g29850	chr1:010447866	0.0	W/10447866-10447868,10448680-10448745,10448849-10448907,10449005-10449069,10449180-10449271,10449409-10449480,10449598-10449630	AT1G29850.1  CDS  gene_syn F1N18.11, F1N18_11  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function double-stranded DNA binding|GO:0003690||ISS  product double-stranded DNA-binding family protein  note double-stranded DNA-binding family protein; FUNCTIONS IN: double-stranded DNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding TFAR19-related protein (InterPro:IPR002836); Has 495 Blast hits to 495 proteins in 234 species: Archae - 166; Bacteria - 2; Metazoa - 117; Fungi - 83; Plants - 30; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).  protein_id AT1G29850.1p  transcript_id AT1G29850.1  protein_id AT1G29850.1p  transcript_id AT1G29850.1  
At1g29850	chr1:010447866	0.0	W/10447866-10447868,10448680-10448745,10448849-10448907,10449005-10449069,10449180-10449271,10449409-10449485,10449598-10449691	AT1G29850.3  CDS  gene_syn F1N18.11, F1N18_11  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function double-stranded DNA binding|GO:0003690||ISS  product double-stranded DNA-binding family protein  note double-stranded DNA-binding family protein; FUNCTIONS IN: double-stranded DNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding TFAR19-related protein (InterPro:IPR002836).  protein_id AT1G29850.3p  transcript_id AT1G29850.3  protein_id AT1G29850.3p  transcript_id AT1G29850.3  
At1g29860	chr1:010454482	0.0	W/10454482-10454801,10454995-10455141,10455271-10455652	AT1G29860.1  CDS  gene_syn AtWRKY71, F1N18.10, F1N18_10, WRKY71  gene WRKY71  function member of WRKY Transcription Factor; Group II-c  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY71; transcription factor  note WRKY71; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY group IIc (InterPro:IPR017396); BEST Arabidopsis thaliana protein match is: WRKY28; transcription factor (TAIR:AT4G18170.1); Has 2033 Blast hits to 1744 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2020; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G29860.1p  transcript_id AT1G29860.1  protein_id AT1G29860.1p  transcript_id AT1G29860.1  
At1g29870	chr1:010458462	0.0	C/10458462-10458782,10457998-10458377,10457810-10457927,10457527-10457724,10457215-10457439,10457065-10457124,10456902-10456991	AT1G29870.1  CDS  gene_syn CELLULOSE SYNTHASE LIKE D3, CLSD3, F1N18.9, F1N18_9  go_component cytoplasm|GO:0005737||IEA  go_process translation|GO:0006412||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_process glycyl-tRNA aminoacylation|GO:0006426||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function glycine-tRNA ligase activity|GO:0004820||IEA  go_function ATP binding|GO:0005524||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||ISS  go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS  go_function ATP binding|GO:0005524||ISS  product tRNA synthetase class II (G, H, P and S) family protein  note tRNA synthetase class II (G, H, P and S) family protein; FUNCTIONS IN: glycine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: translation, tRNA aminoacylation for protein translation, glycyl-tRNA aminoacylation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (G, H, P and S), conserved region (InterPro:IPR002314), Glycyl-tRNA synthetase, alpha2 dimer (InterPro:IPR002315), Glycyl-tRNA synthetase, alpha2 dimer, C-terminal (InterPro:IPR018160), Aminoacyl-tRNA synthetase, class II, conserved region (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: glycyl-tRNA synthetase / glycine--tRNA ligase (TAIR:AT1G29880.1); Has 2537 Blast hits to 2522 proteins in 623 species: Archae - 136; Bacteria - 771; Metazoa - 133; Fungi - 119; Plants - 32; Viruses - 0; Other Eukaryotes - 1346 (source: NCBI BLink).  protein_id AT1G29870.1p  transcript_id AT1G29870.1  protein_id AT1G29870.1p  transcript_id AT1G29870.1  
At1g29880	chr1:010462293	0.0	C/10462293-10462781,10461662-10462044,10461460-10461577,10461157-10461351,10460828-10461052,10460639-10460698,10460486-10460566,10459985-10460390,10459662-10459894	AT1G29880.1  CDS  gene_syn CELLULOSE SYNTHASE LIKE C12, CLSC12, F1N18.8, F1N18_8  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function glycine-tRNA ligase activity|GO:0004820||IEA  go_function ATP binding|GO:0005524||IEA  go_component mitochondrion|GO:0005739|16251277|IDA  go_process glycyl-tRNA aminoacylation|GO:0006426||ISS  go_function glycine-tRNA ligase activity|GO:0004820||ISS  product glycyl-tRNA synthetase / glycine--tRNA ligase  note glycyl-tRNA synthetase / glycine--tRNA ligase; FUNCTIONS IN: glycine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: response to cadmium ion, glycyl-tRNA aminoacylation; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (G, H, P and S), conserved region (InterPro:IPR002314), WHEP-TRS (InterPro:IPR000738), Aminoacyl-tRNA synthetase, class II, conserved region (InterPro:IPR006195), Glycyl-tRNA synthetase, alpha2 dimer (InterPro:IPR002315), Anticodon-binding (InterPro:IPR004154), Glycyl-tRNA synthetase, alpha2 dimer, C-terminal (InterPro:IPR018160), S15/NS1, RNA-binding (InterPro:IPR009068); BEST Arabidopsis thaliana protein match is: tRNA synthetase class II (G, H, P and S) family protein (TAIR:AT1G29870.1); Has 4267 Blast hits to 3231 proteins in 634 species: Archae - 169; Bacteria - 1528; Metazoa - 158; Fungi - 116; Plants - 33; Viruses - 0; Other Eukaryotes - 2263 (source: NCBI BLink).  protein_id AT1G29880.1p  transcript_id AT1G29880.1  protein_id AT1G29880.1p  transcript_id AT1G29880.1  
At1g29890	chr1:010463532	0.0	W/10463532-10463579,10464111-10464202,10464320-10464457,10464544-10464600,10464676-10464748,10464932-10465090,10465263-10465785,10465932-10466047,10466127-10466213,10466307-10466395,10466501-10466563,10466647-10466703,10466821-10466917,10466998-10467153	AT1G29890.2  CDS  gene_syn CELLULOSE SYNTHASE LIKE C4, CLSC4, F1N18.7, F1N18_7  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product acetyltransferase-related  note acetyltransferase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cas1p-like (InterPro:IPR012419); BEST Arabidopsis thaliana protein match is: O-acetyltransferase family protein (TAIR:AT2G34410.2); Has 188 Blast hits to 184 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 99; Fungi - 25; Plants - 57; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G29890.2p  transcript_id AT1G29890.2  protein_id AT1G29890.2p  transcript_id AT1G29890.2  
At1g29890	chr1:010464491	0.0	W/10464491-10464600,10464676-10464748,10464932-10465090,10465263-10465412,10465530-10465785,10465932-10466047,10466127-10466213,10466307-10466395,10466501-10466563,10466647-10466703,10466821-10466917,10466998-10467153	AT1G29890.1  CDS  gene_syn CELLULOSE SYNTHASE LIKE C4, CLSC4, F1N18.7, F1N18_7  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product acetyltransferase-related  note acetyltransferase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cas1p-like (InterPro:IPR012419); BEST Arabidopsis thaliana protein match is: O-acetyltransferase family protein (TAIR:AT2G34410.2); Has 186 Blast hits to 184 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 97; Fungi - 25; Plants - 57; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G29890.1p  transcript_id AT1G29890.1  protein_id AT1G29890.1p  transcript_id AT1G29890.1  
At1g29900	chr1:010468164	0.0	W/10468164-10469510,10469656-10470348,10470453-10471976	AT1G29900.1  CDS  gene_syn CARB, CARBAMOYL PHOSPHATE SYNTHETASE B, CARBAMOYL PHOSPHATE SYNTHETASE LARGE SUBUNIT, CELLULOSE SYNTHASE LIKE B6, CLSB6, F1N18.6, F1N18_6  gene CARB  function carbamoyl phosphate synthetase large chain (CARB) mRNA,  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function catalytic activity|GO:0003824||IEA  go_function carbamoyl-phosphate synthase activity|GO:0004086||IEA  go_function ATP binding|GO:0005524||IEA  go_process arginine biosynthetic process|GO:0006526|16545809|NAS  go_function carbamoyl-phosphate synthase activity|GO:0004086||ISS  go_function ATP binding|GO:0005524||ISS  product CARB (CARBAMOYL PHOSPHATE SYNTHETASE B); ATP binding / carbamoyl-phosphate synthase/ catalytic  note CARBAMOYL PHOSPHATE SYNTHETASE B (CARB); FUNCTIONS IN: carbamoyl-phosphate synthase activity, catalytic activity, ATP binding; INVOLVED IN: arginine biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbamoyl phosphate synthase, large subunit, N-terminal (InterPro:IPR005481), Carbamoyl phosphate synthetase, large subunit, ATP-binding (InterPro:IPR005479), MGS-like (InterPro:IPR011607), PreATP-grasp-like fold (InterPro:IPR016185), Carbamoyl phosphate synthetase, large subunit, oligomerisation (InterPro:IPR005480), Carbamoyl phosphate synthase, large subunit, glutamine-dependent (InterPro:IPR006275), ATP-grasp fold (InterPro:IPR011761), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), Carbamoyl phosphate synthase, large subunit (InterPro:IPR005483), Pre-ATP-grasp fold (InterPro:IPR013817); BEST Arabidopsis thaliana protein match is: MCCA; methylcrotonoyl-CoA carboxylase (TAIR:AT1G03090.2); Has 34717 Blast hits to 20742 proteins in 2695 species: Archae - 428; Bacteria - 11731; Metazoa - 3334; Fungi - 684; Plants - 273; Viruses - 0; Other Eukaryotes - 18267 (source: NCBI BLink).  protein_id AT1G29900.1p  transcript_id AT1G29900.1  protein_id AT1G29900.1p  transcript_id AT1G29900.1  
At1g29910	chr1:010472443	0.0	C/10472443-10473246	AT1G29910.1  CDS  gene_syn AB180, CAB3, CELLULOSE SYNTHASE LIKE B3, CHLOROPHYLL A/B BINDING PROTEIN 3, CSLB3, F1N18.5, LHCB1.2, LIGHT HARVESTING CHLOROPHYLL A/B BINDING PROTEIN 1.2  gene CAB3  function member of Chlorophyll a/b-binding protein family  go_component mitochondrion|GO:0005739|15276431|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_process photosynthesis, light harvesting|GO:0009765||IEA  go_component plastoglobule|GO:0010287|16414959|IDA  go_component plastoglobule|GO:0010287|16461379|IDA  go_component light-harvesting complex|GO:0030076||ISS  go_process photosynthesis|GO:0015979||ISS  go_function chlorophyll binding|GO:0016168|2204948|TAS  go_function chlorophyll binding|GO:0016168||ISS  product CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3); chlorophyll binding  note CHLOROPHYLL A/B BINDING PROTEIN 3 (CAB3); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting, photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: cotyledon, guard cell, juvenile leaf, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: CAB2 (CHLOROPHYLL A/B-BINDING PROTEIN 2); chlorophyll binding (TAIR:AT1G29920.1); Has 1799 Blast hits to 1721 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1555; Viruses - 0; Other Eukaryotes - 242 (source: NCBI BLink).  protein_id AT1G29910.1p  transcript_id AT1G29910.1  protein_id AT1G29910.1p  transcript_id AT1G29910.1  
At1g29920	chr1:010475089	0.0	C/10475089-10475892	AT1G29920.1  CDS  gene_syn AB165, CAB2, CHLOROPHYLL A/B-BINDING PROTEIN 2, F1N18.4, F1N18_4, LHCB1.1, LIGHT HARVESTING CHLOROPHYLL A/B-BINDING PROTEIN 1.1  gene CAB2  function Encodes lhcb1.1 a component of the LHCIIb light harvesting complex associated with photosystem II.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_component light-harvesting complex|GO:0030076||ISS  go_process response to blue light|GO:0009637|18820083|IEP  go_process response to red light|GO:0010114|18820083|IEP  go_process response to far red light|GO:0010218|18820083|IEP  go_process photosynthesis|GO:0015979||ISS  go_function chlorophyll binding|GO:0016168|2204948|TAS  go_function chlorophyll binding|GO:0016168||ISS  product CAB2 (CHLOROPHYLL A/B-BINDING PROTEIN 2); chlorophyll binding  note CHLOROPHYLL A/B-BINDING PROTEIN 2 (CAB2); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light, photosynthesis; LOCATED IN: light-harvesting complex, thylakoid, chloroplast thylakoid membrane, apoplast, chloroplast; EXPRESSED IN: 13 plant structures; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3); chlorophyll binding (TAIR:AT1G29910.1); Has 1799 Blast hits to 1721 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1555; Viruses - 0; Other Eukaryotes - 242 (source: NCBI BLink).  protein_id AT1G29920.1p  transcript_id AT1G29920.1  protein_id AT1G29920.1p  transcript_id AT1G29920.1  
At1g29930	chr1:010478071	0.0	W/10478071-10478874	AT1G29930.1  CDS  gene_syn AB140, CAB1, CAB140, CELLULOSE SYNTHASE LIKE C8, CHLOROPHYLL A/B BINDING PROTEIN 1, CHLOROPHYLL A/B PROTEIN 140, CLSC8, F1N18.3, F1N18_3, LHCB1.3, LIGHT-HARVESTING CHLOROPHYLL A/B-PROTEIN 1.3  gene CAB1  function Subunit of light-harvesting complex II (LHCII),which absorbs light and transfers energy to the photosynthetic reaction center.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component light-harvesting complex|GO:0030076||ISS  go_process photosynthesis|GO:0015979|3012462|ISS  go_function chlorophyll binding|GO:0016168|12232164|TAS  go_function chlorophyll binding|GO:0016168||ISS  product CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll binding  note CHLOROPHYLL A/B BINDING PROTEIN 1 (CAB1); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis; LOCATED IN: light-harvesting complex, thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: guard cell, juvenile leaf, cultured cell; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: CAB2 (CHLOROPHYLL A/B-BINDING PROTEIN 2); chlorophyll binding (TAIR:AT1G29920.1); Has 1798 Blast hits to 1720 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1555; Viruses - 0; Other Eukaryotes - 241 (source: NCBI BLink).  protein_id AT1G29930.1p  transcript_id AT1G29930.1  protein_id AT1G29930.1p  transcript_id AT1G29930.1  
At1g29940	chr1:010486490	0.0	C/10486490-10486670,10486308-10486393,10486099-10486218,10485778-10485854,10485467-10485530,10485265-10485335,10485073-10485150,10484942-10484987,10484601-10484781,10484474-10484526,10484128-10484201,10483924-10484041,10483640-10483727,10483329-10483444,10483088-10483215,10482909-10482988,10482228-10482469,10481985-10482140,10481736-10481900,10481588-10481662,10481377-10481480,10481204-10481279,10480806-10480931,10480558-10480698,10480271-10480483,10479855-10480109,10479322-10479744	AT1G29940.1  CDS  gene_syn F1N18.2, NRPA2  gene NRPA2  function Encodes a subunit of RNA polymerase 1 (aka RNA polymerase A).  go_component nucleus|GO:0005634||IEA  go_process transcription|GO:0006350||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_function ribonucleoside binding|GO:0032549||IEA  go_process transcription|GO:0006350||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product NRPA2; DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding  note NRPA2; FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, subunit 2, domain 6 (InterPro:IPR007120), RNA polymerase Rpb2, domain 7 (InterPro:IPR007641), RNA polymerase, beta subunit, protrusion (InterPro:IPR007644), RNA polymerase I, Rpa2 specific (InterPro:IPR009674), RNA polymerase Rpb2, domain 3 (InterPro:IPR007645), DNA-directed RNA polymerase, subunit 2 (InterPro:IPR015712), RNA polymerase Rpb2, domain 2 (InterPro:IPR007642), RNA polymerase, beta subunit, conserved site (InterPro:IPR007121); BEST Arabidopsis thaliana protein match is: NRPC2; DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding (TAIR:AT5G45140.1); Has 13869 Blast hits to 13448 proteins in 4504 species: Archae - 270; Bacteria - 4634; Metazoa - 391; Fungi - 2384; Plants - 1358; Viruses - 213; Other Eukaryotes - 4619 (source: NCBI BLink).  protein_id AT1G29940.1p  transcript_id AT1G29940.1  protein_id AT1G29940.1p  transcript_id AT1G29940.1  
At1g29952	chr1:010492498	0.0	W/10492498-10492575	AT1G29952.1  CDS  gene_syn CPuORF34, Conserved peptide upstream open reading frame 34  gene CPuORF34  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF34 represents a conserved upstream opening reading frame relative to major ORF AT1G29950.2  product CPuORF34 (Conserved peptide upstream open reading frame 34)  note Conserved peptide upstream open reading frame 34 (CPuORF34); Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G29952.1p  transcript_id AT1G29952.1  protein_id AT1G29952.1p  transcript_id AT1G29952.1  
At1g29951	chr1:010492790	0.0	W/10492790-10492897,10493066-10493104	AT1G29951.1  CDS  gene_syn CPuORF35, Conserved peptide upstream open reading frame 35  gene CPuORF35  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF35 represents a conserved upstream opening reading frame relative to major ORF AT1G29950.2  product CPuORF35 (Conserved peptide upstream open reading frame 35)  note Conserved peptide upstream open reading frame 35 (CPuORF35); Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29951.1p  transcript_id AT1G29951.1  protein_id AT1G29951.1p  transcript_id AT1G29951.1  
At1g29950	chr1:010493461	0.0	W/10493461-10494216	AT1G29950.1  CDS  gene_syn T1P2.2  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription regulator activity|GO:0030528|12897250|TAS  product transcription factor/ transcription regulator  note transcription factor/ transcription regulator; FUNCTIONS IN: transcription factor activity, transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); Has 669 Blast hits to 563 proteins in 55 species: Archae - 0; Bacteria - 2; Metazoa - 111; Fungi - 22; Plants - 211; Viruses - 2; Other Eukaryotes - 321 (source: NCBI BLink).  protein_id AT1G29950.1p  transcript_id AT1G29950.1  protein_id AT1G29950.1p  transcript_id AT1G29950.1  
At1g29950	chr1:010493461	0.0	W/10493461-10494216	AT1G29950.2  CDS  gene_syn T1P2.2  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription regulator activity|GO:0030528|12897250|TAS  product transcription factor/ transcription regulator  note transcription factor/ transcription regulator; FUNCTIONS IN: transcription factor activity, transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); Has 669 Blast hits to 563 proteins in 55 species: Archae - 0; Bacteria - 2; Metazoa - 111; Fungi - 22; Plants - 211; Viruses - 2; Other Eukaryotes - 321 (source: NCBI BLink).  protein_id AT1G29950.2p  transcript_id AT1G29950.2  protein_id AT1G29950.2p  transcript_id AT1G29950.2  
At1g29960	chr1:010494813	0.0	W/10494813-10494938,10495027-10495251,10495565-10495675,10495804-10495851	AT1G29960.1  CDS  gene_syn AGAMOUS-LIKE 64, AGL64, T1P2.16, T1P2_16  go_component membrane|GO:0016020||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type peptidase activity|GO:0008236||IEA  go_component membrane|GO:0016020||ISS  go_process proteolysis|GO:0006508||ISS  go_function peptidase activity|GO:0008233||ISS  product peptidase/ serine-type peptidase  note peptidase/ serine-type peptidase; FUNCTIONS IN: serine-type peptidase activity, peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Peptidase S24, S26A and S26B, C-terminal (InterPro:IPR011056), Peptidase S24, S26A, S26B and S26C (InterPro:IPR015927), Peptidase S26A, signal peptidase I (InterPro:IPR000223), Peptidase S26A (InterPro:IPR014037); BEST Arabidopsis thaliana protein match is: signal peptidase-related (TAIR:AT1G23465.1); Has 2938 Blast hits to 2935 proteins in 757 species: Archae - 0; Bacteria - 1866; Metazoa - 211; Fungi - 145; Plants - 138; Viruses - 0; Other Eukaryotes - 578 (source: NCBI BLink).  protein_id AT1G29960.1p  transcript_id AT1G29960.1  protein_id AT1G29960.1p  transcript_id AT1G29960.1  
At1g29962	chr1:010496730	0.0	W/10496730-10497287	AT1G29962.1  CDS  gene_syn AGAMOUS-LIKE 64, AGL64  gene AGL64  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product AGL64 (AGAMOUS-LIKE 64); transcription factor  note AGAMOUS-LIKE 64 (AGL64); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL59 (AGAMOUS-LIKE 59); DNA binding / transcription factor (TAIR:AT1G28460.1); Has 3791 Blast hits to 3791 proteins in 514 species: Archae - 0; Bacteria - 0; Metazoa - 521; Fungi - 174; Plants - 3059; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT1G29962.1p  transcript_id AT1G29962.1  protein_id AT1G29962.1p  transcript_id AT1G29962.1  
At1g29965	chr1:010499359	0.0	C/10499359-10499373,10499129-10499244,10498970-10499033,10498458-10498799	AT1G29965.1  CDS  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L18A  (RPL18aA)  note 60S ribosomal protein L18A (RPL18aA); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, ribosome; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18ae (InterPro:IPR002670); BEST Arabidopsis thaliana protein match is: RPL18AA (60S RIBOSOMAL PROTEIN L18A-1); structural constituent of ribosome (TAIR:AT1G29970.2); Has 545 Blast hits to 543 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 242; Fungi - 102; Plants - 93; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT1G29965.1p  transcript_id AT1G29965.1  protein_id AT1G29965.1p  transcript_id AT1G29965.1  
At1g29970	chr1:010501137	0.0	C/10501137-10501311,10501004-10501054,10500819-10500894,10500120-10500234,10499129-10499244,10498970-10499033,10498458-10498799	AT1G29970.2  CDS  gene_syn 60S RIBOSOMAL PROTEIN L18A-1, RPL18AA, T1P2.8, T1P2_8  gene RPL18AA  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  product RPL18AA (60S RIBOSOMAL PROTEIN L18A-1); structural constituent of ribosome  note 60S RIBOSOMAL PROTEIN L18A-1 (RPL18AA); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18ae (InterPro:IPR002670); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L18A (RPL18aA) (TAIR:AT1G29965.1); Has 615 Blast hits to 613 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 242; Fungi - 102; Plants - 163; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT1G29970.2p  transcript_id AT1G29970.2  protein_id AT1G29970.2p  transcript_id AT1G29970.2  
At1g29970	chr1:010501137	0.0	C/10501137-10501311,10501004-10501054,10500819-10500894,10500120-10500234,10499952-10500011	AT1G29970.1  CDS  gene_syn 60S RIBOSOMAL PROTEIN L18A-1, RPL18AA, T1P2.8, T1P2_8  gene RPL18AA  product RPL18AA (60S RIBOSOMAL PROTEIN L18A-1)  note 60S RIBOSOMAL PROTEIN L18A-1 (RPL18AA); EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17080.1); Has 75 Blast hits to 75 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29970.1p  transcript_id AT1G29970.1  protein_id AT1G29970.1p  transcript_id AT1G29970.1  
At1g29970	chr1:010501137	0.0	C/10501137-10501311,10501004-10501054,10500819-10500894,10500673-10500715,10500492-10500574,10500120-10500234,10499952-10500011	AT1G29970.3  CDS  gene_syn 60S RIBOSOMAL PROTEIN L18A-1, RPL18AA, T1P2.8, T1P2_8  gene RPL18AA  product RPL18AA (60S RIBOSOMAL PROTEIN L18A-1)  note 60S RIBOSOMAL PROTEIN L18A-1 (RPL18AA); EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17080.1).  protein_id AT1G29970.3p  transcript_id AT1G29970.3  protein_id AT1G29970.3p  transcript_id AT1G29970.3  
At1g29980	chr1:010504086	0.0	C/10504086-10504617,10503411-10503994	AT1G29980.2  CDS  gene_syn T1P2.9, T1P2_9  go_component plasma membrane|GO:0005886|17317660|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34510.1); Has 174 Blast hits to 163 proteins in 15 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29980.2p  transcript_id AT1G29980.2  protein_id AT1G29980.2p  transcript_id AT1G29980.2  
At1g29980	chr1:010505880	0.0	C/10505880-10505994,10504086-10504610,10503411-10503994	AT1G29980.1  CDS  gene_syn T1P2.9, T1P2_9  go_component plasma membrane|GO:0005886|17317660|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34510.1); Has 180 Blast hits to 163 proteins in 15 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29980.1p  transcript_id AT1G29980.1  protein_id AT1G29980.1p  transcript_id AT1G29980.1  
At1g29990	chr1:010507666	0.0	W/10507666-10507741,10507836-10507906,10508026-10508150,10508388-10508448,10508765-10508821	AT1G29990.1  CDS  gene_syn PDF6, PREFOLDIN 6, T1P2.3, T1P2_3  gene PDF6  function Encodes a cytoplastic protein with similarity to yeast prefoldin6, a subunit of the prefoldin complex. The PFD complex is thought to function along with the TCP ring complex to properly fold microtubule proteins.  go_function unfolded protein binding|GO:0051082||IEA  go_component cytoplasm|GO:0005737|19004800|IDA  go_component prefoldin complex|GO:0016272|19004800|IPI  go_process protein folding|GO:0006457||ISS  go_process cortical microtubule organization|GO:0043622|19004800|IMP  product PDF6 (PREFOLDIN 6); unfolded protein binding  note PREFOLDIN 6 (PDF6); FUNCTIONS IN: unfolded protein binding; INVOLVED IN: cortical microtubule organization, protein folding; LOCATED IN: prefoldin complex, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin beta-like (InterPro:IPR002777), Prefoldin (InterPro:IPR009053); Has 341 Blast hits to 341 proteins in 165 species: Archae - 40; Bacteria - 4; Metazoa - 132; Fungi - 77; Plants - 19; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT1G29990.1p  transcript_id AT1G29990.1  protein_id AT1G29990.1p  transcript_id AT1G29990.1  
At1g30000	chr1:010512243	0.0	C/10512243-10512320,10510808-10511745,10510441-10510702,10510110-10510307,10509873-10510021,10509532-10509781	AT1G30000.1  CDS  gene_syn T1P2.10, T1P2_10  go_function mannosyl-oligosaccharide 1,2-alpha-mannosidase activity|GO:0004571||IEA  go_function calcium ion binding|GO:0005509||IEA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process protein amino acid N-linked glycosylation|GO:0006487||ISS  go_function alpha-mannosidase activity|GO:0004559||ISS  product glycoside hydrolase family 47 protein  note glycoside hydrolase family 47 protein; FUNCTIONS IN: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, alpha-mannosidase activity, calcium ion binding; INVOLVED IN: protein amino acid N-linked glycosylation; LOCATED IN: Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 47 (InterPro:IPR001382); BEST Arabidopsis thaliana protein match is: mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative (TAIR:AT1G51590.1); Has 1507 Blast hits to 1364 proteins in 137 species: Archae - 0; Bacteria - 8; Metazoa - 700; Fungi - 557; Plants - 86; Viruses - 0; Other Eukaryotes - 156 (source: NCBI BLink).  protein_id AT1G30000.1p  transcript_id AT1G30000.1  protein_id AT1G30000.1p  transcript_id AT1G30000.1  
At1g30010	chr1:010513194	0.0	W/10513194-10515329	AT1G30010.1  CDS  gene_syn T1P2.4, T1P2_4  go_process RNA-dependent DNA replication|GO:0006278||IEA  go_process RNA splicing|GO:0008380||IEA  go_function RNA binding|GO:0003723||IEA  go_function RNA-directed DNA polymerase activity|GO:0003964||IEA  go_process RNA-dependent DNA replication|GO:0006278||ISS  go_process RNA splicing|GO:0008380||ISS  go_function RNA binding|GO:0003723||ISS  go_function RNA-directed DNA polymerase activity|GO:0003964||ISS  product intron maturase, type II family protein  note intron maturase, type II family protein; FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity; INVOLVED IN: RNA-dependent DNA replication, RNA splicing; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Intron maturase, type II (InterPro:IPR000442), RNA-directed DNA polymerase (reverse transcriptase) (InterPro:IPR000477); BEST Arabidopsis thaliana protein match is: intron maturase, type II family protein (TAIR:AT5G46920.1); Has 2543 Blast hits to 2478 proteins in 473 species: Archae - 11; Bacteria - 2127; Metazoa - 5; Fungi - 45; Plants - 195; Viruses - 2; Other Eukaryotes - 158 (source: NCBI BLink).  protein_id AT1G30010.1p  transcript_id AT1G30010.1  protein_id AT1G30010.1p  transcript_id AT1G30010.1  
At1g30020	chr1:010515874	0.0	C/10515874-10516347	AT1G30020.1  CDS  gene_syn T1P2.11, T1P2_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46230.1); Has 160 Blast hits to 158 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30020.1p  transcript_id AT1G30020.1  protein_id AT1G30020.1p  transcript_id AT1G30020.1  
At1g30016	chr1:010521120	0.0	C/10521120-10521215	AT1G30016.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G30016.1p  transcript_id AT1G30016.1  protein_id AT1G30016.1p  transcript_id AT1G30016.1  
At1g30030	chr1:010531831	0.0	W/10531831-10534842	AT1G30030.1  mRNA_TE_gene  pseudo  gene_syn T1P2.5  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 3.5e-30 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)  
At1g30040	chr1:010537769	0.0	W/10537769-10538181,10538388-10538730,10539301-10539570	AT1G30040.1  CDS  gene_syn ATGA2OX2, GIBBERELLIN 2-OXIDASE, T1P2.6, T1P2_6  gene ATGA2OX2  function Encodes a gibberellin 2-oxidase. AtGA2OX2 expression is responsive to cytokinin and KNOX activities.  go_process response to red or far red light|GO:0009639|17010113|IEP  go_process response to red light|GO:0010114|17449805|IEP  go_process gibberellin catabolic process|GO:0045487|10200325|IDA  go_function gibberellin 2-beta-dioxygenase activity|GO:0045543|10200325|IDA  product ATGA2OX2 (GIBBERELLIN 2-OXIDASE); gibberellin 2-beta-dioxygenase  note GIBBERELLIN 2-OXIDASE (ATGA2OX2); FUNCTIONS IN: gibberellin 2-beta-dioxygenase activity; INVOLVED IN: response to red or far red light, response to red light, gibberellin catabolic process; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: ATGA2OX3 (gibberellin 2-oxidase 3); gibberellin 2-beta-dioxygenase (TAIR:AT2G34555.1); Has 5858 Blast hits to 5836 proteins in 673 species: Archae - 0; Bacteria - 720; Metazoa - 88; Fungi - 656; Plants - 3065; Viruses - 0; Other Eukaryotes - 1329 (source: NCBI BLink).  protein_id AT1G30040.1p  transcript_id AT1G30040.1  protein_id AT1G30040.1p  transcript_id AT1G30040.1  
At1g30040	chr1:010537769	0.0	W/10537769-10538181,10538388-10538781	AT1G30040.2  CDS  gene_syn ATGA2OX2, GIBBERELLIN 2-OXIDASE, T1P2.6, T1P2_6  gene ATGA2OX2  function Encodes a gibberellin 2-oxidase. AtGA2OX2 expression is responsive to cytokinin and KNOX activities.  go_process response to red or far red light|GO:0009639|17010113|IEP  go_process response to red light|GO:0010114|17449805|IEP  go_process gibberellin catabolic process|GO:0045487|10200325|IDA  go_function gibberellin 2-beta-dioxygenase activity|GO:0045543|10200325|IDA  product ATGA2OX2 (GIBBERELLIN 2-OXIDASE); gibberellin 2-beta-dioxygenase  note GIBBERELLIN 2-OXIDASE (ATGA2OX2); FUNCTIONS IN: gibberellin 2-beta-dioxygenase activity; INVOLVED IN: response to red or far red light, response to red light, gibberellin catabolic process; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: ATGA2OX3 (gibberellin 2-oxidase 3); gibberellin 2-beta-dioxygenase (TAIR:AT2G34555.1); Has 4904 Blast hits to 4889 proteins in 631 species: Archae - 0; Bacteria - 659; Metazoa - 74; Fungi - 396; Plants - 2863; Viruses - 0; Other Eukaryotes - 912 (source: NCBI BLink).  protein_id AT1G30040.2p  transcript_id AT1G30040.2  protein_id AT1G30040.2p  transcript_id AT1G30040.2  
At1g30050	chr1:010543177	0.0	W/10543177-10543362,10543435-10544418	AT1G30050.1  CDS  gene_syn T1P2.7, T1P2_7  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01970.1); Has 168 Blast hits to 166 proteins in 45 species: Archae - 0; Bacteria - 4; Metazoa - 70; Fungi - 4; Plants - 58; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT1G30050.1p  transcript_id AT1G30050.1  protein_id AT1G30050.1p  transcript_id AT1G30050.1  
At1g30060	chr1:010545804	0.0	C/10545804-10545906,10545638-10545705,10545368-10545557,10545087-10545256	AT1G30060.1  CDS  gene_syn T1P2.17, T1P2_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product COP1-interacting protein-related  note COP1-interacting protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SGS (InterPro:IPR007699); BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT2G01800.3); Has 64 Blast hits to 64 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30060.1p  transcript_id AT1G30060.1  protein_id AT1G30060.1p  transcript_id AT1G30060.1  
At1g30070	chr1:010547962	0.0	C/10547962-10548072,10547495-10547650,10547141-10547380,10546991-10547050,10546794-10546895	AT1G30070.1  CDS  gene_syn T1P2.12, T1P2_12  go_component plasma membrane|GO:0005886|17644812|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SGS domain-containing protein  note SGS domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CS domain (InterPro:IPR007052), SGS (InterPro:IPR007699), HSP20-like chaperone (InterPro:IPR008978), CS (InterPro:IPR017447); BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT1G30060.1); Has 228 Blast hits to 227 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 120; Fungi - 14; Plants - 46; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT1G30070.1p  transcript_id AT1G30070.1  protein_id AT1G30070.1p  transcript_id AT1G30070.1  
At1g30080	chr1:010553095	0.0	C/10553095-10553167,10552636-10552978,10551740-10552463,10551231-10551317	AT1G30080.1  CDS  gene_syn T1P2.13, T1P2_13  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT4G18340.1); Has 1394 Blast hits to 1382 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 13; Plants - 1378; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G30080.1p  transcript_id AT1G30080.1  protein_id AT1G30080.1p  transcript_id AT1G30080.1  
At1g30090	chr1:010559746	0.0	C/10559746-10560942	AT1G30090.1  CDS  gene_syn T2H7.11, T2H7_11  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: AFR (ATTENUATED FAR-RED RESPONSE) (TAIR:AT2G24540.1); Has 5225 Blast hits to 3208 proteins in 143 species: Archae - 14; Bacteria - 216; Metazoa - 4256; Fungi - 0; Plants - 542; Viruses - 9; Other Eukaryotes - 188 (source: NCBI BLink).  protein_id AT1G30090.1p  transcript_id AT1G30090.1  protein_id AT1G30090.1p  transcript_id AT1G30090.1  
At1g30100	chr1:010571383	0.0	W/10571383-10573152	AT1G30100.1  CDS  gene_syn ATNCED5, NCED5, NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5, T2H7.10, T2H7_10  gene NCED5  function Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene increases during the first 6h of imbibition.  go_component thylakoid|GO:0009579|12834401|IDA  go_process abscisic acid biosynthetic process|GO:0009688|12834401|TAS  go_function 9-cis-epoxycarotenoid dioxygenase activity|GO:0045549|12834401|TAS  product NCED5 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5); 9-cis-epoxycarotenoid dioxygenase  note NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5 (NCED5); FUNCTIONS IN: 9-cis-epoxycarotenoid dioxygenase activity; INVOLVED IN: abscisic acid biosynthetic process; LOCATED IN: thylakoid; EXPRESSED IN: leaf whorl, sepal, flower, stamen, seed; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: NCED2 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 2); 9-cis-epoxycarotenoid dioxygenase (TAIR:AT4G18350.1); Has 2137 Blast hits to 2117 proteins in 355 species: Archae - 10; Bacteria - 525; Metazoa - 208; Fungi - 116; Plants - 570; Viruses - 0; Other Eukaryotes - 708 (source: NCBI BLink).  protein_id AT1G30100.1p  transcript_id AT1G30100.1  protein_id AT1G30100.1p  transcript_id AT1G30100.1  
At1g30110	chr1:010582700	0.0	W/10582700-10582765,10582870-10582920,10583246-10583338,10583426-10583520,10583599-10583821	AT1G30110.1  CDS  gene_syn ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 25, ATNUDX25, T2H7.9, T2H7_9  gene ATNUDX25  go_component cellular_component|GO:0005575||ND  go_process diadenosine tetraphosphate catabolic process|GO:0015967|18345354|IDA  go_function bis(5 -nucleosyl)-tetraphosphatase (asymmetrical) activity|GO:0004081|18345354|IDA  go_function bis(5 -nucleosyl)-tetraphosphatase (asymmetrical) activity|GO:0004081||ISS  product ATNUDX25 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 25); bis(5 -nucleosyl)-tetraphosphatase (asymmetrical)  note ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 25 (ATNUDX25); FUNCTIONS IN: bis(5 -nucleosyl)-tetraphosphatase (asymmetrical) activity; INVOLVED IN: diadenosine tetraphosphate catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), NUDIX hydrolase, core (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: ATNUDX26 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 26); bis(5 -adenosyl)-pentaphosphatase/ bis(5 -nucleosyl)-tetraphosphatase (asymmetrical) (TAIR:AT3G10620.1); Has 4194 Blast hits to 4194 proteins in 805 species: Archae - 14; Bacteria - 2251; Metazoa - 23; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 1859 (source: NCBI BLink).  protein_id AT1G30110.1p  transcript_id AT1G30110.1  protein_id AT1G30110.1p  transcript_id AT1G30110.1  
At1g30120	chr1:010586369	0.0	C/10586369-10586477,10586141-10586247,10586030-10586061,10584350-10585322	AT1G30120.1  CDS  gene_syn PDH-E1 BETA, PYRUVATE DEHYDROGENASE E1 BETA  gene PDH-E1 BETA  function Encodes a putative plastid pyruvate dehydrogenase E1 beta subunit that is distinct from the mitochondrial pyruvate dehydrogenase E1 beta subunit.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast|GO:0009507|9393637|TAS  go_component plastid pyruvate dehydrogenase complex|GO:0010240|9393637|TAS  go_process fatty acid biosynthetic process|GO:0006633|9393637|TAS  go_function pyruvate dehydrogenase (acetyl-transferring) activity|GO:0004739|9393637|TAS  go_function pyruvate dehydrogenase (acetyl-transferring) activity|GO:0004739||ISS  product PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA); pyruvate dehydrogenase (acetyl-transferring)  note PYRUVATE DEHYDROGENASE E1 BETA (PDH-E1 BETA); FUNCTIONS IN: pyruvate dehydrogenase (acetyl-transferring) activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: plastid pyruvate dehydrogenase complex, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, C-terminal (InterPro:IPR005476), Transketolase C-terminal-like (InterPro:IPR015941), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase, central region (InterPro:IPR005475); BEST Arabidopsis thaliana protein match is: transketolase family protein (TAIR:AT2G34590.1); Has 9549 Blast hits to 9541 proteins in 1369 species: Archae - 95; Bacteria - 4698; Metazoa - 391; Fungi - 143; Plants - 162; Viruses - 0; Other Eukaryotes - 4060 (source: NCBI BLink).  protein_id AT1G30120.1p  transcript_id AT1G30120.1  protein_id AT1G30120.1p  transcript_id AT1G30120.1  
At1g30130	chr1:010587666	0.0	W/10587666-10587964,10588280-10588391,10588525-10588617,10588707-10588907,10588992-10589222	AT1G30130.1  CDS  gene_syn T2H7.7, T2H7_7  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1365 (InterPro:IPR010775); Has 1416 Blast hits to 1416 proteins in 265 species: Archae - 0; Bacteria - 477; Metazoa - 0; Fungi - 4; Plants - 20; Viruses - 0; Other Eukaryotes - 915 (source: NCBI BLink).  protein_id AT1G30130.1p  transcript_id AT1G30130.1  protein_id AT1G30130.1p  transcript_id AT1G30130.1  
At1g30130	chr1:010587666	0.0	W/10587666-10587964,10588280-10588391,10588525-10588617,10588707-10588907,10588992-10589222	AT1G30130.2  CDS  gene_syn T2H7.7, T2H7_7  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1365 (InterPro:IPR010775); Has 1416 Blast hits to 1416 proteins in 265 species: Archae - 0; Bacteria - 477; Metazoa - 0; Fungi - 4; Plants - 20; Viruses - 0; Other Eukaryotes - 915 (source: NCBI BLink).  protein_id AT1G30130.2p  transcript_id AT1G30130.2  protein_id AT1G30130.2p  transcript_id AT1G30130.2  
At1g30135	chr1:010596516	0.0	W/10596516-10596595,10596696-10596807,10596892-10597095	AT1G30135.1  CDS  gene_syn JASMONATE-ZIM-DOMAIN PROTEIN 8, JAZ8, TIFY5A  gene JAZ8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product JAZ8 (JASMONATE-ZIM-DOMAIN PROTEIN 8)  note JASMONATE-ZIM-DOMAIN PROTEIN 8 (JAZ8); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: JAZ7 (JASMONATE-ZIM-DOMAIN PROTEIN 7) (TAIR:AT2G34600.1); Has 60 Blast hits to 60 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30135.1p  transcript_id AT1G30135.1  protein_id AT1G30135.1p  transcript_id AT1G30135.1  
At1g30140	chr1:010598764	0.0	W/10598764-10599096,10599192-10599527	AT1G30140.1  CDS  gene_syn T2H7.6, T2H7_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 169 Blast hits to 146 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 163; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30140.1p  transcript_id AT1G30140.1  protein_id AT1G30140.1p  transcript_id AT1G30140.1  
At1g30150	chr1:010602178	0.0	W/10602178-10605159	AT1G30150.1  mRNA_TE_gene  pseudo  gene_syn T2H7.5, T2H7_5  note Transposable element gene, CACTA-like transposase family (Tnp1/En/Spm), has a 2.2e-24 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)  
At1g30160	chr1:010606274	0.0	W/10606274-10606306,10606480-10607216,10607305-10607635	AT1G30160.2  CDS  gene_syn T2H7.4, T2H7_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05540.1); Has 115 Blast hits to 112 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30160.2p  transcript_id AT1G30160.2  protein_id AT1G30160.2p  transcript_id AT1G30160.2  
At1g30160	chr1:010606612	0.0	W/10606612-10607216,10607305-10607635	AT1G30160.1  CDS  gene_syn T2H7.4, T2H7_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05540.1); Has 115 Blast hits to 112 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30160.1p  transcript_id AT1G30160.1  protein_id AT1G30160.1p  transcript_id AT1G30160.1  
At1g30170	chr1:010609497	0.0	C/10609497-10609529,10608480-10609219,10608068-10608395	AT1G30170.1  CDS  gene_syn T2H7.3, T2H7_3  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30160.2); Has 139 Blast hits to 136 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30170.1p  transcript_id AT1G30170.1  protein_id AT1G30170.1p  transcript_id AT1G30170.1  
At1g30180	chr1:010610685	0.0	W/10610685-10614013	AT1G30180.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 9.5e-115 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At1g30190	chr1:010618966	0.0	W/10618966-10619802	AT1G30190.1  CDS  gene_syn T2H7.2, T2H7_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34610.1); Has 34 Blast hits to 34 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G30190.1p  transcript_id AT1G30190.1  protein_id AT1G30190.1p  transcript_id AT1G30190.1  
At1g30200	chr1:010625147	0.0	W/10625147-10626286	AT1G30200.1  CDS  gene_syn F12P21.1, F12P21_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G46170.1); Has 84 Blast hits to 83 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30200.1p  transcript_id AT1G30200.1  protein_id AT1G30200.1p  transcript_id AT1G30200.1  
At1g30200	chr1:010625147	0.0	W/10625147-10626286	AT1G30200.2  CDS  gene_syn F12P21.1, F12P21_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G46170.1); Has 84 Blast hits to 83 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30200.2p  transcript_id AT1G30200.2  protein_id AT1G30200.2p  transcript_id AT1G30200.2  
At1g30210	chr1:010628754	0.0	C/10628754-10629728	AT1G30210.1  CDS  gene_syn ATTCP24, F12P21.11, F12P21_11, TCP24, TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24  gene TCP24  function TCP family protein involved in heterochronic regulation of leaf differentiation.  go_component cellular_component|GO:0005575||ND  go_process leaf morphogenesis|GO:0009965|18805992|IGI  go_process cell differentiation|GO:0030154|18805992|IGI  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process positive regulation of development, heterochronic|GO:0045962|18805992|IGI  go_process leaf development|GO:0048366|16169896|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); transcription factor  note TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24 (TCP24); FUNCTIONS IN: transcription factor activity; INVOLVED IN: cell differentiation, positive regulation of development, heterochronic, leaf development, leaf morphogenesis, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), CYC/TB1, R domain (InterPro:IPR017888), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor, putative (TAIR:AT4G18390.2); Has 2169 Blast hits to 1327 proteins in 305 species: Archae - 0; Bacteria - 5; Metazoa - 389; Fungi - 14; Plants - 1216; Viruses - 0; Other Eukaryotes - 545 (source: NCBI BLink).  protein_id AT1G30210.1p  transcript_id AT1G30210.1  protein_id AT1G30210.1p  transcript_id AT1G30210.1  
At1g30210	chr1:010628754	0.0	C/10628754-10629728	AT1G30210.2  CDS  gene_syn ATTCP24, F12P21.11, F12P21_11, TCP24, TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24  gene TCP24  function TCP family protein involved in heterochronic regulation of leaf differentiation.  go_component cellular_component|GO:0005575||ND  go_process leaf morphogenesis|GO:0009965|18805992|IGI  go_process cell differentiation|GO:0030154|18805992|IGI  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process positive regulation of development, heterochronic|GO:0045962|18805992|IGI  go_process leaf development|GO:0048366|16169896|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); transcription factor  note TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24 (TCP24); FUNCTIONS IN: transcription factor activity; INVOLVED IN: cell differentiation, positive regulation of development, heterochronic, leaf development, leaf morphogenesis, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), CYC/TB1, R domain (InterPro:IPR017888), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor, putative (TAIR:AT4G18390.2); Has 2169 Blast hits to 1327 proteins in 305 species: Archae - 0; Bacteria - 5; Metazoa - 389; Fungi - 14; Plants - 1216; Viruses - 0; Other Eukaryotes - 545 (source: NCBI BLink).  protein_id AT1G30210.2p  transcript_id AT1G30210.2  protein_id AT1G30210.2p  transcript_id AT1G30210.2  
At1g30220	chr1:010635301	0.0	C/10635301-10635439,10635141-10635211,10634382-10634717,10634188-10634295,10633513-10634115,10632957-10633442	AT1G30220.1  CDS  gene_syn ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, ATINT2, F12P21.2, F12P21_2, INOSITOL TRANSPORTER 2, INT2  gene INT2  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product INT2 (INOSITOL TRANSPORTER 2); carbohydrate transmembrane transporter/ sugar:hydrogen symporter  note INOSITOL TRANSPORTER 2 (INT2); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: INT4 (INOSITOL TRANSPORTER 4); carbohydrate transmembrane transporter/ myo-inositol:hydrogen symporter/ sugar:hydrogen symporter (TAIR:AT4G16480.1); Has 32781 Blast hits to 26138 proteins in 1411 species: Archae - 356; Bacteria - 14031; Metazoa - 6350; Fungi - 7762; Plants - 2596; Viruses - 2; Other Eukaryotes - 1684 (source: NCBI BLink).  protein_id AT1G30220.1p  transcript_id AT1G30220.1  protein_id AT1G30220.1p  transcript_id AT1G30220.1  
At1g30230	chr1:010639286	0.0	W/10639286-10639368,10639512-10639628,10639743-10639836,10639925-10640048,10640139-10640414,10640514-10640515	AT1G30230.1  CDS  gene_syn F12P21.12, F12P21_12  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function translation elongation factor activity|GO:0003746||IEA  go_component eukaryotic translation elongation factor 1 complex|GO:0005853||ISS  go_process translational elongation|GO:0006414||ISS  go_function translation elongation factor activity|GO:0003746||ISS  product elongation factor 1-beta / EF-1-beta  note elongation factor 1-beta / EF-1-beta; FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation, response to cadmium ion; LOCATED IN: plasma membrane, eukaryotic translation elongation factor 1 complex; EXPRESSED IN: guard cell, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Translation elongation factor EF1B/ribosomal protein S6 (InterPro:IPR014717), Translation elongation factor EF1B, beta and delta chains, guanine nucleotide exchange (InterPro:IPR014038), Translation elongation factor EF1B, beta/delta chains, conserved site (InterPro:IPR001326); BEST Arabidopsis thaliana protein match is: elongation factor 1-beta, putative / EF-1-beta, putative (TAIR:AT2G18110.1); Has 758 Blast hits to 758 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 410; Fungi - 111; Plants - 109; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).  protein_id AT1G30230.1p  transcript_id AT1G30230.1  protein_id AT1G30230.1p  transcript_id AT1G30230.1  
At1g30230	chr1:010639286	0.0	W/10639286-10639368,10639512-10639628,10639743-10639836,10639925-10640048,10640139-10640418,10640517-10640601	AT1G30230.2  CDS  gene_syn F12P21.12, F12P21_12  go_component plasma membrane|GO:0005886|17317660|IDA  go_function translation elongation factor activity|GO:0003746||IEA  go_component eukaryotic translation elongation factor 1 complex|GO:0005853||ISS  go_process translational elongation|GO:0006414||ISS  go_function translation elongation factor activity|GO:0003746||ISS  product elongation factor 1-beta / EF-1-beta  note elongation factor 1-beta / EF-1-beta; FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: plasma membrane, eukaryotic translation elongation factor 1 complex; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Translation elongation factor EF1B/ribosomal protein S6 (InterPro:IPR014717), Translation elongation factor EF1B, beta and delta chains, guanine nucleotide exchange (InterPro:IPR014038), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Translation elongation factor EF1B, beta/delta chains, conserved site (InterPro:IPR001326); BEST Arabidopsis thaliana protein match is: elongation factor 1-beta, putative / EF-1-beta, putative (TAIR:AT2G18110.1); Has 758 Blast hits to 758 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 410; Fungi - 111; Plants - 109; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).  protein_id AT1G30230.2p  transcript_id AT1G30230.2  protein_id AT1G30230.2p  transcript_id AT1G30230.2  
At1g30240	chr1:010645572	0.0	C/10645572-10645838,10645356-10645472,10645202-10645266,10644759-10644864,10644354-10644425,10644110-10644169,10643898-10644027,10643631-10643815,10643155-10643339,10642748-10642875,10642405-10642673,10641985-10642228,10641241-10641896	AT1G30240.2  CDS  gene_syn F12P21.4, F12P21_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 120 Blast hits to 120 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 41; Plants - 27; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G30240.2p  transcript_id AT1G30240.2  protein_id AT1G30240.2p  transcript_id AT1G30240.2  
At1g30240	chr1:010645572	0.0	C/10645572-10645838,10645356-10645472,10645202-10645266,10644759-10644864,10644354-10644425,10644110-10644169,10643898-10644027,10643631-10643815,10643155-10643339,10642754-10642875,10642405-10642673,10641985-10642228,10641241-10641896	AT1G30240.1  CDS  gene_syn F12P21.4, F12P21_4  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 116 Blast hits to 116 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 41; Plants - 27; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G30240.1p  transcript_id AT1G30240.1  protein_id AT1G30240.1p  transcript_id AT1G30240.1  
At1g30250	chr1:010647253	0.0	C/10647253-10647501	AT1G30250.1  CDS  gene_syn F12P21.5, F12P21_5  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30250.1p  transcript_id AT1G30250.1  protein_id AT1G30250.1p  transcript_id AT1G30250.1  
At1g30260	chr1:010651159	0.0	W/10651159-10651452	AT1G30260.1  CDS  gene_syn AGAMOUS-LIKE 79, AGL79, F12P21.9, F12P21_9  go_process response to cytokinin stimulus|GO:0009735|16212609|IEP  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cytokinin stimulus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: galactosyltransferase family protein (TAIR:AT4G21060.1); Has 16 Blast hits to 16 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30260.1p  transcript_id AT1G30260.1  protein_id AT1G30260.1p  transcript_id AT1G30260.1  
At1g30270	chr1:010655270	0.0	W/10655270-10655494,10655586-10655648,10655946-10656017,10656104-10656211,10656320-10656400,10656540-10656593,10656691-10656816,10656993-10657082,10657202-10657321,10657401-10657526,10657741-10657857,10657954-10658010,10658091-10658165,10658284-10658365,10658472-10658524	AT1G30270.1  CDS  gene_syn ATCIPK23, CBL-INTERACTING PROTEIN KINASE 23, CIPK23, F12P21.6, F12P21_6, LKS1, LOW-K+-SENSITIVE 1, SNF1-RELATED PROTEIN KINASE 3.23, SnRK3.23  gene CIPK23  function Arabidopsis thaliana CBL-interacting protein kinase 23. CIPK23 serves as a positive regulator of the potassium transporter AKT1 by directly phosphorylates AKT1. CIPK23 is activated by the binding of two calcineurin B-like proteins, CBL1 and CBL9.  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleus|GO:0005634|17922773|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component cytosol|GO:0005829|17922773|IDA  go_component plasma membrane|GO:0005886|17922773|IPI  go_process response to nutrient|GO:0007584|17922773|IMP  go_process response to water deprivation|GO:0009414|17922773|IMP  go_process potassium ion import|GO:0010107|16814720|IMP  go_process stomatal movement|GO:0010118|17922773|IMP  go_function protein serine/threonine kinase activity|GO:0004674|16814720|IDA  go_function protein binding|GO:0005515|16814720|IPI  go_function kinase activity|GO:0016301||ISS  product CIPK23 (CBL-INTERACTING PROTEIN KINASE 23); kinase/ protein binding / protein serine/threonine kinase  note CBL-INTERACTING PROTEIN KINASE 23 (CIPK23); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, kinase activity; INVOLVED IN: response to water deprivation, potassium ion import, stomatal movement, response to nutrient; LOCATED IN: cytosol, plasma membrane, nucleus, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CIPK9 (CBL-INTERACTING PROTEIN KINASE 9); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT1G01140.1); Has 96554 Blast hits to 94841 proteins in 3068 species: Archae - 76; Bacteria - 8641; Metazoa - 41672; Fungi - 8845; Plants - 18335; Viruses - 484; Other Eukaryotes - 18501 (source: NCBI BLink).  protein_id AT1G30270.1p  transcript_id AT1G30270.1  protein_id AT1G30270.1p  transcript_id AT1G30270.1  
At1g30282	chr1:010663332	0.0	W/10663332-10664763	AT1G30282.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G30280  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G30282.1  
At1g30280	chr1:010664089	0.0	C/10664089-10664570,10663424-10663994,10663249-10663338,10662984-10663163,10662851-10662895	AT1G30280.1  CDS  gene_syn F12P21.7, F12P21_7  go_function heat shock protein binding|GO:0031072||IEA  go_component cellular_component|GO:0005575||ND  product heat shock protein binding  note heat shock protein binding; FUNCTIONS IN: heat shock protein binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: JAC1 (J-DOMAIN PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1); heat shock protein binding (TAIR:AT1G75100.1); Has 2605 Blast hits to 1437 proteins in 169 species: Archae - 0; Bacteria - 42; Metazoa - 1533; Fungi - 237; Plants - 165; Viruses - 69; Other Eukaryotes - 559 (source: NCBI BLink).  protein_id AT1G30280.1p  transcript_id AT1G30280.1  protein_id AT1G30280.1p  transcript_id AT1G30280.1  
At1g30290	chr1:010670320	0.0	C/10670320-10672740	AT1G30290.1  CDS  gene_syn F12P21.10, F12P21_10  function unknown protein  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: EMB2745 (EMBRYO DEFECTIVE 2745) (TAIR:AT5G39710.1).  protein_id AT1G30290.1p  transcript_id AT1G30290.1  protein_id AT1G30290.1p  transcript_id AT1G30290.1  
At1g30300	chr1:010673084	0.0	W/10673084-10673277,10673541-10673676,10673867-10673994,10674094-10674241,10674329-10674434,10674521-10674579,10674684-10674719,10674792-10674901,10675004-10675061	AT1G30300.1  CDS  gene_syn F12P21.8, F12P21_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G03610.1); Has 1586 Blast hits to 1576 proteins in 327 species: Archae - 19; Bacteria - 528; Metazoa - 0; Fungi - 17; Plants - 57; Viruses - 0; Other Eukaryotes - 965 (source: NCBI BLink).  protein_id AT1G30300.1p  transcript_id AT1G30300.1  protein_id AT1G30300.1p  transcript_id AT1G30300.1  
At1g30310	chr1:010675489	0.0	C/10675489-10675935	AT1G30310.1  mRNA_TE_gene  pseudo  gene_syn F26G16.1  note Transposable element gene, copia-like retrotransposon family, has a 7.6e-19 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At1g30320	chr1:010680348	0.0	W/10680348-10680377,10680709-10680895,10681236-10681850,10681939-10682344,10682458-10682539,10682643-10682852	AT1G30320.1  CDS  gene_syn T4K22.7, T4K22_7  go_component plasma membrane|GO:0005886|17317660|IDA  go_function DNA binding|GO:0003677||ISS  product remorin family protein  note remorin family protein; FUNCTIONS IN: DNA binding; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal region (InterPro:IPR005516); BEST Arabidopsis thaliana protein match is: remorin family protein (TAIR:AT2G02170.2); Has 11227 Blast hits to 6329 proteins in 787 species: Archae - 19; Bacteria - 2109; Metazoa - 2795; Fungi - 948; Plants - 557; Viruses - 39; Other Eukaryotes - 4760 (source: NCBI BLink).  protein_id AT1G30320.1p  transcript_id AT1G30320.1  protein_id AT1G30320.1p  transcript_id AT1G30320.1  
At1g30330	chr1:010689994	0.0	C/10689994-10690036,10689789-10689901,10689605-10689703,10689455-10689511,10689215-10689370,10689046-10689130,10688866-10688956,10688618-10688782,10688414-10688536,10688258-10688333,10688018-10688165,10686699-10687936,10686427-10686617,10686125-10686341	AT1G30330.1  CDS  gene_syn ARF6, AUXIN RESPONSE FACTOR 6, T4K22.6, T4K22_6  gene ARF6  function Encodes a member of the auxin response factor family. Mediates auxin response via expression of auxin regulated genes. Acts redundantly with ARF8 to control stamen elongation and flower maturation. Expression of ARF6 is controlled by miR167.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to auxin stimulus|GO:0009733|16107481|IMP  go_process flower development|GO:0009908|16107481|IGI  go_function transcription factor activity|GO:0003700|11118137|ISS  product ARF6 (AUXIN RESPONSE FACTOR 6); transcription factor  note AUXIN RESPONSE FACTOR 6 (ARF6); FUNCTIONS IN: transcription factor activity; INVOLVED IN: flower development, response to auxin stimulus, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: ARF8 (AUXIN RESPONSE FACTOR 8); transcription factor (TAIR:AT5G37020.2); Has 60878 Blast hits to 24471 proteins in 1009 species: Archae - 8; Bacteria - 3128; Metazoa - 21947; Fungi - 6356; Plants - 4892; Viruses - 657; Other Eukaryotes - 23890 (source: NCBI BLink).  protein_id AT1G30330.1p  transcript_id AT1G30330.1  protein_id AT1G30330.1p  transcript_id AT1G30330.1  
At1g30330	chr1:010689994	0.0	C/10689994-10690036,10689789-10689907,10689605-10689703,10689455-10689511,10689215-10689370,10689046-10689130,10688866-10688956,10688618-10688782,10688414-10688536,10688258-10688333,10688018-10688165,10686699-10687936,10686427-10686617,10686125-10686341	AT1G30330.2  CDS  gene_syn ARF6, AUXIN RESPONSE FACTOR 6, T4K22.6, T4K22_6  gene ARF6  function Encodes a member of the auxin response factor family. Mediates auxin response via expression of auxin regulated genes. Acts redundantly with ARF8 to control stamen elongation and flower maturation. Expression of ARF6 is controlled by miR167.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to auxin stimulus|GO:0009733|16107481|IMP  go_process flower development|GO:0009908|16107481|IGI  go_function transcription factor activity|GO:0003700|11118137|ISS  product ARF6 (AUXIN RESPONSE FACTOR 6); transcription factor  note AUXIN RESPONSE FACTOR 6 (ARF6); FUNCTIONS IN: transcription factor activity; INVOLVED IN: flower development, response to auxin stimulus, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: ARF8 (AUXIN RESPONSE FACTOR 8); transcription factor (TAIR:AT5G37020.2); Has 60979 Blast hits to 24485 proteins in 1010 species: Archae - 8; Bacteria - 3114; Metazoa - 22033; Fungi - 6336; Plants - 4903; Viruses - 658; Other Eukaryotes - 23927 (source: NCBI BLink).  protein_id AT1G30330.2p  transcript_id AT1G30330.2  protein_id AT1G30330.2p  transcript_id AT1G30330.2  
At1g30340	chr1:010696999	0.0	W/10696999-10701393	AT1G30340.1  mRNA_TE_gene  pseudo  gene_syn T4K22.10  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At1g30350	chr1:010711020	0.0	C/10711020-10711664,10710831-10710934,10710590-10710728,10710194-10710412	AT1G30350.1  CDS  gene_syn T4K22.5, T4K22_5  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function lyase activity|GO:0016829||ISS  go_function pectate lyase activity|GO:0030570||ISS  product pectate lyase family protein  note pectate lyase family protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectate lyase family protein (TAIR:AT1G11920.1); Has 967 Blast hits to 962 proteins in 167 species: Archae - 0; Bacteria - 429; Metazoa - 0; Fungi - 135; Plants - 393; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G30350.1p  transcript_id AT1G30350.1  protein_id AT1G30350.1p  transcript_id AT1G30350.1  
At1g30360	chr1:010715892	0.0	W/10715892-10716162,10716534-10716691,10716786-10717061,10717159-10717988,10718072-10718327,10718416-10718799	AT1G30360.1  CDS  gene_syn ERD4, T4K22.4, T4K22_4, early-responsive to dehydration 4  gene ERD4  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_process response to water deprivation|GO:0009414|8075396|IEP  product ERD4 (early-responsive to dehydration 4)  note early-responsive to dehydration 4 (ERD4); INVOLVED IN: response to water deprivation; LOCATED IN: plasma membrane, chloroplast, vacuole, membrane, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: early-responsive to dehydration protein-related / ERD protein-related (TAIR:AT1G32090.1); Has 875 Blast hits to 823 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 159; Fungi - 414; Plants - 234; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT1G30360.1p  transcript_id AT1G30360.1  protein_id AT1G30360.1p  transcript_id AT1G30360.1  
At1g30370	chr1:010719169	0.0	C/10719169-10720758	AT1G30370.1  CDS  gene_syn T4K22.3, T4K22_3  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product lipase class 3 family protein  note lipase class 3 family protein; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: lipase class 3 family protein (TAIR:AT1G06800.1); Has 1224 Blast hits to 1220 proteins in 234 species: Archae - 0; Bacteria - 275; Metazoa - 63; Fungi - 247; Plants - 361; Viruses - 8; Other Eukaryotes - 270 (source: NCBI BLink).  protein_id AT1G30370.1p  transcript_id AT1G30370.1  protein_id AT1G30370.1p  transcript_id AT1G30370.1  
At1g30380	chr1:010722325	0.0	W/10722325-10722408,10722628-10722708,10722786-10723013	AT1G30380.1  CDS  gene_syn PSAK, PSI-K, T4K22.2, T4K22_2, photosystem I subunit K  gene PSAK  function Encodes subunit K of photosystem I reaction center.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_process photosynthesis|GO:0015979||IEA  go_component photosystem I|GO:0009522||ISS  go_component membrane|GO:0016020||ISS  go_process photosynthesis|GO:0015979||ISS  go_function molecular_function|GO:0003674||ND  product PSAK (photosystem I subunit K)  note photosystem I subunit K (PSAK); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthesis; LOCATED IN: thylakoid, chloroplast thylakoid membrane, photosystem I, chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I PsaG/PsaK protein (InterPro:IPR000549), Photosystem I reaction centre, PsaG/PsaK, plant (InterPro:IPR016370), Photosystem I reaction center, PsaK, plant (InterPro:IPR017493); Has 60 Blast hits to 60 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30380.1p  transcript_id AT1G30380.1  protein_id AT1G30380.1p  transcript_id AT1G30380.1  
At1g30390	chr1:010723454	0.0	W/10723454-10725016	AT1G30390.1  mRNA_TE_gene  pseudo  gene_syn T4K22.11, T4K22_11  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.9e-17 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At1g30400	chr1:010728139	0.0	W/10728139-10728468,10728561-10728739,10728836-10728875,10729002-10729158,10729578-10729692,10729775-10729855,10730113-10730137,10730295-10730351,10730571-10730636,10730993-10731067,10731227-10731334,10731721-10731855,10731987-10732093,10732193-10732286,10732617-10732784,10732961-10733101,10733205-10733405,10733572-10733670,10733860-10734012,10734207-10734589,10734856-10735036,10735238-10735561,10735696-10736452,10736558-10736679,10736752-10736997,10737082-10737508,10737600-10737697	AT1G30400.1  CDS  gene_syn ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1, ATABCC1, ATMRP1, EST1, GLUTATHIONE S-CONJUGATE TRANSPORTING ATPASE, MRP1, T4K22.12, T4K22_12  gene MRP1  function glutathione S-conjugate transporting ATPase (AtMRP1) mRNA. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim.  go_component plant-type vacuole|GO:0000325|16618929|IDA  go_component vacuole|GO:0005773|14760709|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component vacuolar membrane|GO:0005774|16618929|IDA  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function xenobiotic-transporting ATPase activity|GO:0008559|9223346|IMP  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|11346655|ISS  product MRP1 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1); ATPase, coupled to transmembrane movement of substances / xenobiotic-transporting ATPase  note ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1 (MRP1); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, xenobiotic-transporting ATPase activity; INVOLVED IN: response to cyclopentenone; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATMRP2 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 2); ATPase, coupled to transmembrane movement of substances (TAIR:AT2G34660.1); Has 391321 Blast hits to 207720 proteins in 2563 species: Archae - 7220; Bacteria - 278351; Metazoa - 10740; Fungi - 5071; Plants - 2959; Viruses - 19; Other Eukaryotes - 86961 (source: NCBI BLink).  protein_id AT1G30400.1p  transcript_id AT1G30400.1  protein_id AT1G30400.1p  transcript_id AT1G30400.1  
At1g30400	chr1:010728139	0.0	W/10728139-10728468,10728561-10728739,10728836-10728875,10729002-10729158,10729578-10729692,10729775-10729855,10730113-10730137,10730295-10730351,10730571-10730636,10730993-10731067,10731227-10731334,10731721-10731855,10731987-10732093,10732193-10732286,10732617-10732784,10732961-10733101,10733205-10733405,10733572-10733670,10733860-10734012,10734207-10734589,10734856-10735036,10735238-10735561,10735696-10736452,10736558-10736679,10736752-10736997,10737082-10737508,10737600-10737697	AT1G30400.2  CDS  gene_syn ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1, ATABCC1, ATMRP1, EST1, GLUTATHIONE S-CONJUGATE TRANSPORTING ATPASE, MRP1, T4K22.12, T4K22_12  gene MRP1  function glutathione S-conjugate transporting ATPase (AtMRP1) mRNA. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim.  go_component plant-type vacuole|GO:0000325|16618929|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component vacuolar membrane|GO:0005774|16618929|IDA  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function xenobiotic-transporting ATPase activity|GO:0008559|9223346|IMP  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|11346655|ISS  product MRP1 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1); ATPase, coupled to transmembrane movement of substances / xenobiotic-transporting ATPase  note ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1 (ATMRP1); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, xenobiotic-transporting ATPase activity; INVOLVED IN: response to cyclopentenone; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATMRP2 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 2); ATPase, coupled to transmembrane movement of substances (TAIR:AT2G34660.1); Has 391321 Blast hits to 207720 proteins in 2563 species: Archae - 7220; Bacteria - 278351; Metazoa - 10740; Fungi - 5071; Plants - 2959; Viruses - 19; Other Eukaryotes - 86961 (source: NCBI BLink).  protein_id AT1G30400.2p  transcript_id AT1G30400.2  protein_id AT1G30400.2p  transcript_id AT1G30400.2  
At1g30410	chr1:010739357	0.0	W/10739357-10739498,10739589-10739689,10739823-10740001,10740163-10740202,10740326-10740482,10740648-10740762,10740866-10740946,10741056-10741080,10741237-10741293,10741611-10741676,10741805-10741879,10741971-10742078,10742158-10742292,10742377-10742483,10742589-10742682,10742807-10742974,10743077-10743217,10743333-10743533,10743669-10743767,10743847-10743999,10744177-10744550,10744721-10744901,10744981-10745304,10745400-10746156,10746242-10746363,10746506-10746751,10746868-10747017	AT1G30410.1  CDS  gene_syn ATMRP13, T4K22.13, T4K22_13  gene ATMRP13  function member of MRP subfamily  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|11346655|ISS  product ATMRP13; ATPase, coupled to transmembrane movement of substances  note ATMRP13; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATMRP12; ATPase, coupled to transmembrane movement of substances (TAIR:AT1G30420.1); Has 356920 Blast hits to 201842 proteins in 2582 species: Archae - 6606; Bacteria - 254207; Metazoa - 10708; Fungi - 4812; Plants - 2967; Viruses - 12; Other Eukaryotes - 77608 (source: NCBI BLink).  protein_id AT1G30410.1p  transcript_id AT1G30410.1  protein_id AT1G30410.1p  transcript_id AT1G30410.1  
At1g30420	chr1:010748816	0.0	W/10748816-10749148,10749269-10749447,10749598-10749637,10749741-10749897,10750020-10750134,10750253-10750333,10750440-10750464,10750661-10750717,10750919-10750984,10751171-10751245,10751337-10751444,10751552-10751686,10751792-10751898,10752002-10752095,10752226-10752393,10752499-10752639,10752750-10752950,10753079-10753177,10753252-10753404,10753542-10753915,10754102-10754282,10754361-10754684,10754778-10755534,10755604-10755725,10755819-10756064,10756167-10756316	AT1G30420.1  CDS  gene_syn ATMRP12, T4K22.1, T4K22_1  gene ATMRP12  function member of MRP subfamily  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|11346655|ISS  product ATMRP12; ATPase, coupled to transmembrane movement of substances  note ATMRP12; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATMRP13; ATPase, coupled to transmembrane movement of substances (TAIR:AT1G30410.1); Has 381012 Blast hits to 206564 proteins in 2586 species: Archae - 7076; Bacteria - 269667; Metazoa - 11239; Fungi - 5118; Plants - 3231; Viruses - 10; Other Eukaryotes - 84671 (source: NCBI BLink).  protein_id AT1G30420.1p  transcript_id AT1G30420.1  protein_id AT1G30420.1p  transcript_id AT1G30420.1  
At1g30430	chr1:010756722	0.0	W/10756722-10756794	AT1G30430.1  tRNA  gene_syn 51682.TRNA-GLU-1, 60744.TRNA-GLU-1, AT1G30435  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Glu (anticodon: CTC)  transcript_id AT1G30430.1  
At1g30440	chr1:010759475	0.0	W/10759475-10759533,10759725-10759794,10760240-10761481,10761573-10762199	AT1G30440.1  CDS  gene_syn F26G16.2, F26G16_2  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to light stimulus|GO:0009416||IEA  go_function signal transducer activity|GO:0004871||IEA  go_function protein binding|GO:0005515||IEA  go_process response to light stimulus|GO:0009416||ISS  go_function signal transducer activity|GO:0004871||ISS  product phototropic-responsive NPH3 family protein  note phototropic-responsive NPH3 family protein; FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: phototropic-responsive NPH3 family protein (TAIR:AT5G03250.1); Has 439 Blast hits to 428 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 436; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30440.1p  transcript_id AT1G30440.1  protein_id AT1G30440.1p  transcript_id AT1G30440.1  
At1g30450	chr1:010762905	0.0	W/10762905-10763065,10763507-10763644,10764072-10764150,10764792-10764883,10764962-10765076,10765273-10765373,10765524-10765585,10765964-10766191,10766289-10766403,10766535-10766729,10767077-10767477,10767656-10767817,10767983-10769061	AT1G30450.1  CDS  gene_syn ATCCC1, CATION-CHLORIDE CO-TRANSPORTER 1, CCC1, F26G16.4, F26G16_4, HAP5, HAPLESS 5  gene CCC1  function member of Cation-chloride co-transporter family  go_component plasma membrane|GO:0005886|17317660|IDA  go_process transport|GO:0006810||IEA  go_process sodium ion transport|GO:0006814||IEA  go_process chloride transport|GO:0006821||IEA  go_process cation transport|GO:0006812||ISS  go_function sodium:potassium:chloride symporter activity|GO:0008511|17355435|IDA  go_function cation:chloride symporter activity|GO:0015377||ISS  product CCC1 (CATION-CHLORIDE CO-TRANSPORTER 1); cation:chloride symporter/ sodium:potassium:chloride symporter  note CATION-CHLORIDE CO-TRANSPORTER 1 (CCC1); FUNCTIONS IN: sodium:potassium:chloride symporter activity, cation:chloride symporter activity; INVOLVED IN: transport, chloride transport, cation transport, sodium ion transport; LOCATED IN: plasma membrane; EXPRESSED IN: root vascular system, root tip, cultured cell; CONTAINS InterPro DOMAIN/s: Amino acid permease-associated region (InterPro:IPR004841), Na/K/Cl co-transporter superfamily (InterPro:IPR004842); Has 2712 Blast hits to 2398 proteins in 465 species: Archae - 62; Bacteria - 914; Metazoa - 1320; Fungi - 105; Plants - 75; Viruses - 0; Other Eukaryotes - 236 (source: NCBI BLink).  protein_id AT1G30450.1p  transcript_id AT1G30450.1  protein_id AT1G30450.1p  transcript_id AT1G30450.1  
At1g30450	chr1:010762905	0.0	W/10762905-10763065,10763507-10763644,10764072-10764150,10764792-10764883,10764962-10765076,10765273-10765373,10765524-10765585,10765964-10766191,10766289-10766403,10766535-10766729,10767077-10767477,10767656-10767817,10767983-10769061	AT1G30450.2  CDS  gene_syn ATCCC1, CATION-CHLORIDE CO-TRANSPORTER 1, CCC1, F26G16.4, F26G16_4, HAP5, HAPLESS 5  gene CCC1  function member of Cation-chloride co-transporter family  go_component plasma membrane|GO:0005886|17317660|IDA  go_process transport|GO:0006810||IEA  go_process sodium ion transport|GO:0006814||IEA  go_process chloride transport|GO:0006821||IEA  go_process cation transport|GO:0006812||ISS  go_function sodium:potassium:chloride symporter activity|GO:0008511|17355435|IDA  go_function cation:chloride symporter activity|GO:0015377||ISS  product CCC1 (CATION-CHLORIDE CO-TRANSPORTER 1); cation:chloride symporter/ sodium:potassium:chloride symporter  note CATION-CHLORIDE CO-TRANSPORTER 1 (CCC1); FUNCTIONS IN: sodium:potassium:chloride symporter activity, cation:chloride symporter activity; INVOLVED IN: transport, chloride transport, cation transport, sodium ion transport; LOCATED IN: plasma membrane; EXPRESSED IN: root vascular system, root tip, cultured cell; CONTAINS InterPro DOMAIN/s: Amino acid permease-associated region (InterPro:IPR004841), Na/K/Cl co-transporter superfamily (InterPro:IPR004842); Has 2712 Blast hits to 2398 proteins in 465 species: Archae - 62; Bacteria - 914; Metazoa - 1320; Fungi - 105; Plants - 75; Viruses - 0; Other Eukaryotes - 236 (source: NCBI BLink).  protein_id AT1G30450.2p  transcript_id AT1G30450.2  protein_id AT1G30450.2p  transcript_id AT1G30450.2  
At1g30450	chr1:010762905	0.0	W/10762905-10763065,10763507-10763644,10764072-10764150,10764792-10764883,10764962-10765076,10765273-10765373,10765524-10765585,10765964-10766191,10766289-10766403,10766535-10766729,10767077-10767477,10767656-10767817,10767983-10769061	AT1G30450.3  CDS  gene_syn ATCCC1, CATION-CHLORIDE CO-TRANSPORTER 1, CCC1, F26G16.4, F26G16_4, HAP5, HAPLESS 5  gene CCC1  function member of Cation-chloride co-transporter family  go_component plasma membrane|GO:0005886|17317660|IDA  go_process transport|GO:0006810||IEA  go_process sodium ion transport|GO:0006814||IEA  go_process chloride transport|GO:0006821||IEA  go_process cation transport|GO:0006812||ISS  go_function sodium:potassium:chloride symporter activity|GO:0008511|17355435|IDA  go_function cation:chloride symporter activity|GO:0015377||ISS  product CCC1 (CATION-CHLORIDE CO-TRANSPORTER 1); cation:chloride symporter/ sodium:potassium:chloride symporter  note CATION-CHLORIDE CO-TRANSPORTER 1 (CCC1); FUNCTIONS IN: sodium:potassium:chloride symporter activity, cation:chloride symporter activity; INVOLVED IN: transport, chloride transport, cation transport, sodium ion transport; LOCATED IN: plasma membrane; EXPRESSED IN: root vascular system, root tip, cultured cell; CONTAINS InterPro DOMAIN/s: Amino acid permease-associated region (InterPro:IPR004841), Na/K/Cl co-transporter superfamily (InterPro:IPR004842); Has 2712 Blast hits to 2398 proteins in 465 species: Archae - 62; Bacteria - 914; Metazoa - 1320; Fungi - 105; Plants - 75; Viruses - 0; Other Eukaryotes - 236 (source: NCBI BLink).  protein_id AT1G30450.3p  transcript_id AT1G30450.3  protein_id AT1G30450.3p  transcript_id AT1G30450.3  
At1g30455	chr1:010769722	0.0	W/10769722-10769941,10770231-10770775	AT1G30455.1  CDS  go_component nucleus|GO:0005634||IEA  go_component transcription factor complex|GO:0005667||IEA  go_process transcription initiation|GO:0006352||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process translational initiation|GO:0006413||IEA  go_process positive regulation of transcription|GO:0045941||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function transcription activator activity|GO:0016563||IEA  go_function transcription regulator activity|GO:0030528||IEA  product protein binding / transcription activator/ transcription regulator/ translation initiation factor/ zinc ion binding  note protein binding / transcription activator/ transcription regulator/ translation initiation factor/ zinc ion binding; FUNCTIONS IN: protein binding, transcription regulator activity, transcription activator activity, zinc ion binding, translation initiation factor activity; INVOLVED IN: translational initiation, positive regulation of transcription, regulation of transcription, DNA-dependent, transcription initiation; LOCATED IN: transcription factor complex, nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Cyclin-like (InterPro:IPR011028), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-related (InterPro:IPR013763), Brf1-like TBP-binding (InterPro:IPR011665); BEST Arabidopsis thaliana protein match is: RNA polymerase II transcription factor/ protein binding / transcription activator/ transcription regulator/ translation initiation factor/ zinc ion binding (TAIR:AT2G45100.1); Has 364 Blast hits to 336 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 143; Fungi - 91; Plants - 40; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT1G30455.1p  transcript_id AT1G30455.1  protein_id AT1G30455.1p  transcript_id AT1G30455.1  
At1g30460	chr1:010774959	0.0	C/10774959-10775323,10774446-10774833	AT1G30460.2  CDS  gene_syn ATCPSF30, CPSF30, F26G16.6, F26G16_6  gene CPSF30  function Encodes AtCPSF30, the 30-KDa subunit of cleavage and polyadenylation specificity factor. AtCPSF30 is a probable processing endonuclease. Nucleus-localized RNA binding protein capable of interacting with itself and with calmodulin. Its RNA-binding activity is inhibited by calmodulin in a calcium-dependent fashion.  go_component nucleus|GO:0005634|16500995|IDA  go_component mRNA cleavage and polyadenylation specificity factor complex|GO:0005847|16500995|ISS  go_process RNA processing|GO:0006396|16500995|TAS  go_process RNA processing|GO:0006396|17576667|IDA  go_function nucleic acid binding|GO:0003676||ISS  go_function RNA binding|GO:0003723|16500995|IDA  go_function endonuclease activity|GO:0004519|17576667|IDA  go_function protein binding|GO:0005515|16897494|IPI  go_function calmodulin binding|GO:0005516|16500995|IDA  product CPSF30; RNA binding / calmodulin binding / endonuclease/ nucleic acid binding / protein binding  note CPSF30; FUNCTIONS IN: protein binding, RNA binding, calmodulin binding, nucleic acid binding, endonuclease activity; INVOLVED IN: RNA processing; LOCATED IN: mRNA cleavage and polyadenylation specificity factor complex, nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein (TAIR:AT1G21570.1); Has 1169 Blast hits to 1115 proteins in 172 species: Archae - 0; Bacteria - 2; Metazoa - 485; Fungi - 243; Plants - 83; Viruses - 10; Other Eukaryotes - 346 (source: NCBI BLink).  protein_id AT1G30460.2p  transcript_id AT1G30460.2  protein_id AT1G30460.2p  transcript_id AT1G30460.2  
At1g30460	chr1:010774959	0.0	C/10774959-10775323,10774486-10774833,10773353-10773515,10773079-10773189,10772819-10772887,10772415-10772501,10771469-10772221	AT1G30460.1  CDS  gene_syn ATCPSF30, CPSF30, F26G16.6, F26G16_6  gene CPSF30  function Encodes AtCPSF30, the 30-KDa subunit of cleavage and polyadenylation specificity factor. AtCPSF30 is a probable processing endonuclease. Nucleus-localized RNA binding protein capable of interacting with itself and with calmodulin. Its RNA-binding activity is inhibited by calmodulin in a calcium-dependent fashion.  go_component nucleus|GO:0005634|16500995|IDA  go_component mRNA cleavage and polyadenylation specificity factor complex|GO:0005847|16500995|ISS  go_process RNA processing|GO:0006396|16500995|TAS  go_process RNA processing|GO:0006396|17576667|IDA  go_function nucleic acid binding|GO:0003676||ISS  go_function RNA binding|GO:0003723|16500995|IDA  go_function endonuclease activity|GO:0004519|17576667|IDA  go_function protein binding|GO:0005515|16897494|IPI  go_function calmodulin binding|GO:0005516|16500995|IDA  product CPSF30; RNA binding / calmodulin binding / endonuclease/ nucleic acid binding / protein binding  note CPSF30; FUNCTIONS IN: protein binding, RNA binding, calmodulin binding, nucleic acid binding, endonuclease activity; INVOLVED IN: RNA processing; LOCATED IN: mRNA cleavage and polyadenylation specificity factor complex, nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), YT521-B-like protein (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: YT521-B-like family protein (TAIR:AT4G11970.2); Has 10997 Blast hits to 7228 proteins in 434 species: Archae - 4; Bacteria - 558; Metazoa - 7699; Fungi - 921; Plants - 539; Viruses - 118; Other Eukaryotes - 1158 (source: NCBI BLink).  protein_id AT1G30460.1p  transcript_id AT1G30460.1  protein_id AT1G30460.1p  transcript_id AT1G30460.1  
At1g30470	chr1:010779423	0.0	W/10779423-10779461,10780167-10780270,10780688-10780774,10780899-10780974,10781071-10781145,10781263-10781316,10781694-10781753,10782075-10782191,10782335-10782429,10782535-10782734,10783110-10783207,10783341-10783444,10783521-10783689,10783764-10783892,10784203-10784285,10784617-10784758,10785297-10785326,10785530-10785600,10785713-10786415	AT1G30470.1  CDS  gene_syn F26G16.8, F26G16_8  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SIT4 phosphatase-associated family protein  note SIT4 phosphatase-associated family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: SIT4 phosphatase-associated protein (InterPro:IPR007587); BEST Arabidopsis thaliana protein match is: SIT4 phosphatase-associated family protein (TAIR:AT1G07990.1); Has 12516 Blast hits to 6210 proteins in 533 species: Archae - 74; Bacteria - 4701; Metazoa - 3496; Fungi - 1722; Plants - 304; Viruses - 104; Other Eukaryotes - 2115 (source: NCBI BLink).  protein_id AT1G30470.1p  transcript_id AT1G30470.1  protein_id AT1G30470.1p  transcript_id AT1G30470.1  
At1g30473	chr1:010787215	0.0	W/10787215-10787241,10787329-10787407,10787494-10788107	AT1G30473.1  CDS  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  product metal ion binding  note metal ion binding; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT4G23882.1); Has 160 Blast hits to 160 proteins in 27 species: Archae - 0; Bacteria - 4; Metazoa - 8; Fungi - 4; Plants - 139; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G30473.1p  transcript_id AT1G30473.1  protein_id AT1G30473.1p  transcript_id AT1G30473.1  
At1g30475	chr1:010789633	0.0	C/10789633-10789717,10789232-10789377,10788821-10788988	AT1G30475.4  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: emb1303 (embryo defective 1303) (TAIR:AT1G56200.1); Has 15 Blast hits to 15 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30475.4p  transcript_id AT1G30475.4  protein_id AT1G30475.4p  transcript_id AT1G30475.4  
At1g30475	chr1:010789633	0.0	C/10789633-10789717,10789232-10789377,10788913-10788988,10788501-10788682	AT1G30475.2  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: emb1303 (embryo defective 1303) (TAIR:AT1G56200.1); Has 121 Blast hits to 121 proteins in 30 species: Archae - 0; Bacteria - 14; Metazoa - 59; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G30475.2p  transcript_id AT1G30475.2  protein_id AT1G30475.2p  transcript_id AT1G30475.2  
At1g30475	chr1:010789633	0.0	C/10789633-10789717,10789232-10789377,10788913-10788988,10788501-10788682	AT1G30475.3  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: emb1303 (embryo defective 1303) (TAIR:AT1G56200.1); Has 121 Blast hits to 121 proteins in 30 species: Archae - 0; Bacteria - 14; Metazoa - 59; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G30475.3p  transcript_id AT1G30475.3  protein_id AT1G30475.3p  transcript_id AT1G30475.3  
At1g30475	chr1:010789859	0.0	C/10789859-10789943,10789633-10789719,10789232-10789377,10788913-10788988,10788501-10788682	AT1G30475.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: emb1303 (embryo defective 1303) (TAIR:AT1G56200.1); Has 127 Blast hits to 127 proteins in 31 species: Archae - 0; Bacteria - 14; Metazoa - 65; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G30475.1p  transcript_id AT1G30475.1  protein_id AT1G30475.1p  transcript_id AT1G30475.1  
At1g30480	chr1:010790315	0.0	W/10790315-10791184,10792130-10792423	AT1G30480.1  CDS  gene_syn DRT111, F26G16.10, F26G16_10  gene DRT111  function recombination and DNA-damage resistance protein (DRT111)  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component chloroplast|GO:0009507|8479917|ISS  go_process DNA repair|GO:0006281|8479917|IGI  product DRT111; nucleic acid binding / nucleotide binding  note DRT111; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: DNA repair; LOCATED IN: nucleus, chloroplast, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), D111/G-patch (InterPro:IPR000467), Splicing factor, SPF45 (InterPro:IPR016967); Has 6554 Blast hits to 5119 proteins in 344 species: Archae - 14; Bacteria - 274; Metazoa - 3622; Fungi - 868; Plants - 423; Viruses - 37; Other Eukaryotes - 1316 (source: NCBI BLink).  protein_id AT1G30480.1p  transcript_id AT1G30480.1  protein_id AT1G30480.1p  transcript_id AT1G30480.1  
At1g30490	chr1:010800524	0.0	C/10800524-10800744,10799853-10800012,10799607-10799722,10799435-10799525,10799244-10799339,10799044-10799157,10798884-10798967,10798650-10798805,10798489-10798563,10798308-10798414,10798046-10798235,10797765-10797953,10797601-10797681,10797374-10797514,10796996-10797285,10796780-10796897,10796547-10796696,10796328-10796474	AT1G30490.1  CDS  gene_syn ATHB9, F26G16.11, F26G16_11, PHAVOLUTA, PHV  gene PHV  function Dominant PHV mutations cause transformation of abaxial leaf fates into adaxial leaf fates. Has overlapping functions with PHABULOSA, REVOLUTA and CORONA/ATHB15 in patterning the apical portion of the embryo. Encodes a member of HD-Zip family which contains homeodomain-leucine zipper domains and domain similar to a mammalian sterol binding domain.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process determination of bilateral symmetry|GO:0009855|15598805|IMP  go_process embryonic pattern specification|GO:0009880|17376809|IGI  go_process adaxial/abaxial axis specification|GO:0009943|11395776|IMP  go_process polarity specification of adaxial/abaxial axis|GO:0009944|15598805|IMP  go_process meristem initiation|GO:0010014|15598805|IMP  go_process primary shoot apical meristem specification|GO:0010072|15598805|IMP  go_process integument development|GO:0080060|19054366|IGI  go_function DNA binding|GO:0003677|11395776|ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein binding|GO:0005515||NAS  product PHV (PHAVOLUTA); DNA binding / protein binding / transcription factor  note PHAVOLUTA (PHV); FUNCTIONS IN: protein binding, transcription factor activity, DNA binding; INVOLVED IN: in 8 processes; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), MEKHLA (InterPro:IPR013978), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: PHB (PHABULOSA); DNA binding / transcription factor (TAIR:AT2G34710.1); Has 2613 Blast hits to 2543 proteins in 222 species: Archae - 0; Bacteria - 22; Metazoa - 803; Fungi - 79; Plants - 1690; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT1G30490.1p  transcript_id AT1G30490.1  protein_id AT1G30490.1p  transcript_id AT1G30490.1  
At1g30500	chr1:010805869	0.0	C/10805869-10805896,10805569-10805699,10805233-10805307,10804989-10805141,10804736-10804909	AT1G30500.1  CDS  gene_syn F26G16.12, F26G16_12, NF-YA7, NUCLEAR FACTOR Y, SUBUNIT A7  gene NF-YA7  go_component nucleus|GO:0005634||IEA  go_component CCAAT-binding factor complex|GO:0016602||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process negative regulation of gene-specific transcription|GO:0032582|19207209|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function specific transcriptional repressor activity|GO:0016566|19207209|IDA  product NF-YA7 (NUCLEAR FACTOR Y, SUBUNIT A7); specific transcriptional repressor/ transcription factor  note NUCLEAR FACTOR Y, SUBUNIT A7 (NF-YA7); FUNCTIONS IN: transcription factor activity, specific transcriptional repressor activity; INVOLVED IN: negative regulation of gene-specific transcription, regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289); BEST Arabidopsis thaliana protein match is: NF-YA4 (NUCLEAR FACTOR Y, SUBUNIT A4); specific transcriptional repressor/ transcription factor (TAIR:AT2G34720.1); Has 441 Blast hits to 441 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 88; Plants - 215; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G30500.1p  transcript_id AT1G30500.1  protein_id AT1G30500.1p  transcript_id AT1G30500.1  
At1g30500	chr1:010805869	0.0	C/10805869-10805896,10805569-10805699,10805233-10805307,10804989-10805153,10804736-10804909	AT1G30500.2  CDS  gene_syn F26G16.12, F26G16_12, NF-YA7, NUCLEAR FACTOR Y, SUBUNIT A7  gene NF-YA7  go_component nucleus|GO:0005634||IEA  go_component CCAAT-binding factor complex|GO:0016602||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process negative regulation of gene-specific transcription|GO:0032582|19207209|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function specific transcriptional repressor activity|GO:0016566|19207209|IDA  product NF-YA7 (NUCLEAR FACTOR Y, SUBUNIT A7); specific transcriptional repressor/ transcription factor  note NUCLEAR FACTOR Y, SUBUNIT A7 (NF-YA7); FUNCTIONS IN: transcription factor activity, specific transcriptional repressor activity; INVOLVED IN: negative regulation of gene-specific transcription, regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289); BEST Arabidopsis thaliana protein match is: NF-YA4 (NUCLEAR FACTOR Y, SUBUNIT A4); specific transcriptional repressor/ transcription factor (TAIR:AT2G34720.1); Has 441 Blast hits to 441 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 88; Plants - 215; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G30500.2p  transcript_id AT1G30500.2  protein_id AT1G30500.2p  transcript_id AT1G30500.2  
At1g30510	chr1:010808059	0.0	C/10808059-10808292,10807742-10807961,10807150-10807649	AT1G30510.3  CDS  gene_syn ATRFNR2, F26G16.13, F26G16_13, FERREDOXIN:NADP(H) OXIDOREDUCTASE, ROOT FNR 2  gene ATRFNR2  function Encodes a root-type ferredoxin:NADP(H) oxidoreductase.  go_component thylakoid membrane|GO:0042651||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function ferredoxin-NADP+ reductase activity|GO:0004324||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product ATRFNR2 (ROOT FNR 2); FAD binding / NADP or NADPH binding / electron carrier/ ferredoxin-NADP+ reductase/ oxidoreductase  note ROOT FNR 2 (ATRFNR2); FUNCTIONS IN: ferredoxin-NADP+ reductase activity, NADP or NADPH binding, electron carrier activity, oxidoreductase activity, FAD binding; INVOLVED IN: oxidation reduction; LOCATED IN: thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), Ferredoxin--NADP reductase (InterPro:IPR012146); BEST Arabidopsis thaliana protein match is: ATRFNR1 (ROOT FNR 1); FAD binding / NADP or NADPH binding / electron carrier/ ferredoxin-NADP+ reductase/ oxidoreductase (TAIR:AT4G05390.1); Has 4574 Blast hits to 4574 proteins in 1034 species: Archae - 6; Bacteria - 2086; Metazoa - 658; Fungi - 507; Plants - 408; Viruses - 0; Other Eukaryotes - 909 (source: NCBI BLink).  protein_id AT1G30510.3p  transcript_id AT1G30510.3  protein_id AT1G30510.3p  transcript_id AT1G30510.3  
At1g30510	chr1:010808961	0.0	C/10808961-10808984,10808573-10808632,10808059-10808400,10807742-10807961,10807150-10807649	AT1G30510.1  CDS  gene_syn ATRFNR2, F26G16.13, F26G16_13, FERREDOXIN:NADP(H) OXIDOREDUCTASE, ROOT FNR 2  gene ATRFNR2  function Encodes a root-type ferredoxin:NADP(H) oxidoreductase.  go_component chloroplast|GO:0009507||IEA  go_component thylakoid membrane|GO:0042651||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function ferredoxin-NADP+ reductase activity|GO:0004324||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product ATRFNR2 (ROOT FNR 2); FAD binding / NADP or NADPH binding / electron carrier/ ferredoxin-NADP+ reductase/ oxidoreductase  note ROOT FNR 2 (ATRFNR2); FUNCTIONS IN: electron carrier activity, NADP or NADPH binding, ferredoxin-NADP+ reductase activity, oxidoreductase activity, FAD binding; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast, thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), Ferredoxin--NADP reductase (InterPro:IPR012146); BEST Arabidopsis thaliana protein match is: ATRFNR1 (ROOT FNR 1); FAD binding / NADP or NADPH binding / electron carrier/ ferredoxin-NADP+ reductase/ oxidoreductase (TAIR:AT4G05390.1); Has 4575 Blast hits to 4575 proteins in 1035 species: Archae - 6; Bacteria - 2087; Metazoa - 658; Fungi - 507; Plants - 408; Viruses - 0; Other Eukaryotes - 909 (source: NCBI BLink).  protein_id AT1G30510.1p  transcript_id AT1G30510.1  protein_id AT1G30510.1p  transcript_id AT1G30510.1  
At1g30510	chr1:010808961	0.0	C/10808961-10808984,10808573-10808632,10808059-10808403,10807742-10807961,10807150-10807649	AT1G30510.2  CDS  gene_syn ATRFNR2, F26G16.13, F26G16_13, FERREDOXIN:NADP(H) OXIDOREDUCTASE, ROOT FNR 2  gene ATRFNR2  function Encodes a root-type ferredoxin:NADP(H) oxidoreductase.  go_component chloroplast|GO:0009507||IEA  go_component thylakoid membrane|GO:0042651||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function ferredoxin-NADP+ reductase activity|GO:0004324||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product ATRFNR2 (ROOT FNR 2); FAD binding / NADP or NADPH binding / electron carrier/ ferredoxin-NADP+ reductase/ oxidoreductase  note ROOT FNR 2 (ATRFNR2); FUNCTIONS IN: electron carrier activity, ferredoxin-NADP+ reductase activity, NADP or NADPH binding, oxidoreductase activity, FAD binding; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast, thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), Ferredoxin--NADP reductase (InterPro:IPR012146); BEST Arabidopsis thaliana protein match is: ATRFNR1 (ROOT FNR 1); FAD binding / NADP or NADPH binding / electron carrier/ ferredoxin-NADP+ reductase/ oxidoreductase (TAIR:AT4G05390.1); Has 4575 Blast hits to 4575 proteins in 1035 species: Archae - 6; Bacteria - 2087; Metazoa - 658; Fungi - 507; Plants - 408; Viruses - 0; Other Eukaryotes - 909 (source: NCBI BLink).  protein_id AT1G30510.2p  transcript_id AT1G30510.2  protein_id AT1G30510.2p  transcript_id AT1G30510.2  
At1g30515	chr1:010809432	0.0	C/10809432-10809866	AT1G30515.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30515.1p  transcript_id AT1G30515.1  protein_id AT1G30515.1p  transcript_id AT1G30515.1  
At1g30520	chr1:010811039	0.0	W/10811039-10811238,10811365-10811437,10811566-10811737,10811819-10811917,10812007-10812104,10812200-10812393,10812464-10812591,10812666-10813051,10813120-10813322,10813417-10813546	AT1G30520.1  CDS  gene_syn AAE14, Acyl-Activating Enzyme 14, F26G16.14, F26G16_14  gene AAE14  function Encodes a chloroplast O-succinylbenzoyl-CoA ligase. Involved in phylloquinone biosynthesis. Knock mutant is seedling lethal.  go_component chloroplast|GO:0009507|18208520|IDA  go_process phylloquinone biosynthetic process|GO:0042372|18208520|IMP  go_function o-succinylbenzoate-CoA ligase activity|GO:0008756|18208520|IGI  go_function AMP binding|GO:0016208||ISS  product AAE14 (Acyl-Activating Enzyme 14); AMP binding / o-succinylbenzoate-CoA ligase  note Acyl-Activating Enzyme 14 (AAE14); FUNCTIONS IN: o-succinylbenzoate-CoA ligase activity, AMP binding; INVOLVED IN: phylloquinone biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: acyl-activating enzyme 13 (AAE13) (TAIR:AT3G16170.1); Has 47598 Blast hits to 44432 proteins in 2224 species: Archae - 532; Bacteria - 27306; Metazoa - 2826; Fungi - 2344; Plants - 1184; Viruses - 1; Other Eukaryotes - 13405 (source: NCBI BLink).  protein_id AT1G30520.1p  transcript_id AT1G30520.1  protein_id AT1G30520.1p  transcript_id AT1G30520.1  
At1g30530	chr1:010814917	0.0	W/10814917-10815406,10815503-10816374	AT1G30530.1  CDS  gene_syn F26G16.15, F26G16_15, UDP-GLUCOSYL TRANSFERASE 78D1, UGT78D1  gene UGT78D1  function The At1g30530 gene encodes a UDP-rhamnose:flavonol-3-O-rhamnosyltransferase (UGT78D1) attaching a rhamnosyl residue to the 3-O-position of the flavonols kaempferol and quercetin  go_process flavonol biosynthetic process|GO:0051555|12900416|IDA  go_process flavonol biosynthetic process|GO:0051555|12900416|IMP  go_function UDP-glycosyltransferase activity|GO:0008194|12900416|IDA  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function quercetin 3-O-glucosyltransferase activity|GO:0080043|15352060|IDA  product UGT78D1 (UDP-GLUCOSYL TRANSFERASE 78D1); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring glycosyl groups  note UDP-GLUCOSYL TRANSFERASE 78D1 (UGT78D1); FUNCTIONS IN: quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: flavonol biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2); UDP-glycosyltransferase/ anthocyanidin 3-O-glucosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT5G17050.1); Has 4523 Blast hits to 4507 proteins in 310 species: Archae - 0; Bacteria - 145; Metazoa - 1650; Fungi - 10; Plants - 2619; Viruses - 71; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT1G30530.1p  transcript_id AT1G30530.1  protein_id AT1G30530.1p  transcript_id AT1G30530.1  
At1g30540	chr1:010818941	0.0	C/10818941-10819172,10818386-10818533,10818107-10818298,10817673-10817801,10817322-10817491,10817105-10817235,10816951-10817004	AT1G30540.1  CDS  gene_syn F26G16.16, F26G16_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ATPase activity|GO:0016887||ISS  product ATPase, BadF/BadG/BcrA/BcrD-type family  note ATPase, BadF/BadG/BcrA/BcrD-type family; FUNCTIONS IN: ATPase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, BadF/BadG/BcrA/BcrD type (InterPro:IPR002731); Has 975 Blast hits to 975 proteins in 386 species: Archae - 31; Bacteria - 696; Metazoa - 107; Fungi - 20; Plants - 23; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT1G30540.1p  transcript_id AT1G30540.1  protein_id AT1G30540.1p  transcript_id AT1G30540.1  
At1g30550	chr1:010823315	0.0	C/10823315-10823613,10823090-10823225,10822743-10822834,10822498-10822621,10822341-10822409	AT1G30550.2  CDS  gene_syn F26G16.17, F26G16_17  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: WW domain-containing protein (TAIR:AT1G45231.2).  protein_id AT1G30550.2p  transcript_id AT1G30550.2  protein_id AT1G30550.2p  transcript_id AT1G30550.2  
At1g30550	chr1:010823632	0.0	C/10823632-10823641,10823340-10823549,10823090-10823208,10822743-10822834,10821915-10822003,10821595-10821829,10821387-10821522,10821194-10821285,10820993-10821116,10820838-10820906	AT1G30550.1  CDS  gene_syn F26G16.17, F26G16_17  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: WW domain-containing protein (TAIR:AT1G45231.2); Has 891 Blast hits to 591 proteins in 275 species: Archae - 68; Bacteria - 248; Metazoa - 211; Fungi - 176; Plants - 45; Viruses - 3; Other Eukaryotes - 140 (source: NCBI BLink).  protein_id AT1G30550.1p  transcript_id AT1G30550.1  protein_id AT1G30550.1p  transcript_id AT1G30550.1  
At1g30560	chr1:010824761	0.0	W/10824761-10826293	AT1G30560.1  CDS  gene_syn T5I8.1, T5I8_1  go_process transport|GO:0006810||ISS  go_process glycerol-3-phosphate transport|GO:0015794||ISS  go_function transporter activity|GO:0005215||ISS  go_function glycerol-3-phosphate transmembrane transporter activity|GO:0015169||ISS  product transporter, putative  note transporter, putative; FUNCTIONS IN: transporter activity, glycerol-3-phosphate transmembrane transporter activity; INVOLVED IN: transport, glycerol-3-phosphate transport; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: transporter, putative (TAIR:AT4G25220.1); Has 11955 Blast hits to 11911 proteins in 1226 species: Archae - 189; Bacteria - 9403; Metazoa - 713; Fungi - 702; Plants - 183; Viruses - 0; Other Eukaryotes - 765 (source: NCBI BLink).  protein_id AT1G30560.1p  transcript_id AT1G30560.1  protein_id AT1G30560.1p  transcript_id AT1G30560.1  
At1g30570	chr1:010828933	0.0	W/10828933-10831482	AT1G30570.1  CDS  gene_syn T5I8.2, T5I8_2  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: THE1 (THESEUS1); kinase/ protein kinase (TAIR:AT5G54380.1); Has 82566 Blast hits to 81527 proteins in 3120 species: Archae - 48; Bacteria - 7102; Metazoa - 36469; Fungi - 6499; Plants - 18648; Viruses - 325; Other Eukaryotes - 13475 (source: NCBI BLink).  protein_id AT1G30570.1p  transcript_id AT1G30570.1  protein_id AT1G30570.1p  transcript_id AT1G30570.1  
At1g30580	chr1:010835368	0.0	C/10835368-10835454,10834867-10835034,10834640-10834763,10834221-10834312,10833961-10834059,10833748-10833861,10833365-10833429,10833089-10833205,10832906-10832981,10832619-10832711,10832248-10832298,10831953-10832051	AT1G30580.1  CDS  gene_syn T5I8.3, T5I8_3  go_component intracellular|GO:0005622||IEA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function GTP binding|GO:0005525||IEA  product GTP binding  note GTP binding; FUNCTIONS IN: GTP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF933 (InterPro:IPR013029), TGS-like (InterPro:IPR012676), GTP1/OBG (InterPro:IPR006073), Conserved hypothetical protein CHP00092 (InterPro:IPR004396), GTP-binding protein, HSR1-related (InterPro:IPR002917), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: GTP-binding protein-related (TAIR:AT1G56050.1); Has 12592 Blast hits to 12588 proteins in 1581 species: Archae - 216; Bacteria - 5420; Metazoa - 582; Fungi - 410; Plants - 148; Viruses - 0; Other Eukaryotes - 5816 (source: NCBI BLink).  protein_id AT1G30580.1p  transcript_id AT1G30580.1  protein_id AT1G30580.1p  transcript_id AT1G30580.1  
At1g30590	chr1:010839408	0.0	C/10839408-10839524,10839217-10839300,10839057-10839128,10838877-10838945,10838550-10838783,10838347-10838457,10838176-10838265,10837870-10837995,10837705-10837773,10837482-10837588,10837289-10837372,10837108-10837195,10836807-10836920,10836510-10836694,10835976-10836240	AT1G30590.1  CDS  gene_syn T5I8.4, T5I8_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA polymerase I transcription factor activity|GO:0003701||ISS  product RNA polymerase I specific transcription initiation factor RRN3 family protein  note RNA polymerase I specific transcription initiation factor RRN3 family protein; FUNCTIONS IN: RNA polymerase I transcription factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA polymerase I specific transcription initiation factor RRN3 (InterPro:IPR007991); BEST Arabidopsis thaliana protein match is: RNA polymerase I specific transcription initiation factor RRN3 family protein (TAIR:AT2G34750.1); Has 244 Blast hits to 239 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 85; Plants - 33; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT1G30590.1p  transcript_id AT1G30590.1  protein_id AT1G30590.1p  transcript_id AT1G30590.1  
At1g30600	chr1:010844692	0.0	C/10844692-10844906,10844197-10844329,10843697-10844094,10843518-10843613,10843367-10843439,10842997-10843279,10842585-10842910,10842229-10842499,10841861-10842142,10841341-10841762	AT1G30600.1  CDS  gene_syn T5I8.5, T5I8_5  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product subtilase family protein  note subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8A, DUF1034 C-terminal (InterPro:IPR010435), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT5G44530.1); Has 5041 Blast hits to 4469 proteins in 811 species: Archae - 129; Bacteria - 3008; Metazoa - 40; Fungi - 379; Plants - 863; Viruses - 0; Other Eukaryotes - 622 (source: NCBI BLink).  protein_id AT1G30600.1p  transcript_id AT1G30600.1  protein_id AT1G30600.1p  transcript_id AT1G30600.1  
At1g30610	chr1:010846676	0.0	W/10846676-10848003,10848200-10848391,10848529-10848610,10848699-10848890,10849002-10849115,10849201-10849291,10849381-10850054,10850170-10850517	AT1G30610.1  CDS  gene_syn T5I8.6, T5I8_6, emb2279, embryo defective 2279  gene emb2279  go_process embryonic development ending in seed dormancy|GO:0009793|15647901|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product emb2279 (embryo defective 2279)  note embryo defective 2279 (emb2279); INVOLVED IN: embryonic development ending in seed dormancy; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: DG1 (DELAYED GREENING 1) (TAIR:AT5G67570.1); Has 7842 Blast hits to 3381 proteins in 140 species: Archae - 1; Bacteria - 6; Metazoa - 162; Fungi - 38; Plants - 7154; Viruses - 0; Other Eukaryotes - 481 (source: NCBI BLink).  protein_id AT1G30610.1p  transcript_id AT1G30610.1  protein_id AT1G30610.1p  transcript_id AT1G30610.1  
At1g30620	chr1:010855496	0.0	W/10855496-10855556,10855815-10855936,10856041-10856154,10856247-10856446,10856530-10856671,10856752-10856846,10856940-10857069,10857474-10857618,10857723-10857970	AT1G30620.3  CDS  gene_syn HIGH SUGAR RESPONSE8, HSR8, MUR4, MURUS 4, T5I8.7, T5I8_7, UDP-D-XYLOSE 4-EPIMERASE 1, UXE1  gene MUR4  function encodes a type-II membrane protein that catalyzes 4-epimerization of UDP-D-Xylose to UDP-L-Arabinose in vitro, the nucleotide sugar used by glycosyltransferases in the arabinosylation of cell wall polysaccharides and wall-resident proteoglycans.  go_component Golgi apparatus|GO:0005794|12566589|IDA  go_process nucleotide-sugar metabolic process|GO:0009225||ISS  go_process plant-type cell wall biogenesis|GO:0009832|9301086|IMP  go_process arabinose biosynthetic process|GO:0019567|10517829|IMP  go_process arabinose biosynthetic process|GO:0019567|17693536|IMP  go_function catalytic activity|GO:0003824||ISS  go_function UDP-arabinose 4-epimerase activity|GO:0050373|12566589|IDA  product MUR4 (MURUS 4); UDP-arabinose 4-epimerase/ catalytic  note MURUS 4 (MUR4); FUNCTIONS IN: UDP-arabinose 4-epimerase activity, catalytic activity; INVOLVED IN: plant-type cell wall biogenesis, arabinose biosynthetic process, nucleotide-sugar metabolic process; LOCATED IN: Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886); BEST Arabidopsis thaliana protein match is: NAD-dependent epimerase/dehydratase family protein (TAIR:AT4G20460.2); Has 30145 Blast hits to 30139 proteins in 1699 species: Archae - 464; Bacteria - 14522; Metazoa - 629; Fungi - 394; Plants - 679; Viruses - 26; Other Eukaryotes - 13431 (source: NCBI BLink).  protein_id AT1G30620.3p  transcript_id AT1G30620.3  protein_id AT1G30620.3p  transcript_id AT1G30620.3  
At1g30620	chr1:010855496	0.0	W/10855496-10855556,10855815-10855939,10856041-10856154,10856247-10856446,10856530-10856671,10856752-10856846,10856940-10857069,10857474-10857618,10857723-10857970	AT1G30620.1  CDS  gene_syn HIGH SUGAR RESPONSE8, HSR8, MUR4, MURUS 4, T5I8.7, T5I8_7, UDP-D-XYLOSE 4-EPIMERASE 1, UXE1  gene MUR4  function encodes a type-II membrane protein that catalyzes 4-epimerization of UDP-D-Xylose to UDP-L-Arabinose in vitro, the nucleotide sugar used by glycosyltransferases in the arabinosylation of cell wall polysaccharides and wall-resident proteoglycans.  go_component Golgi apparatus|GO:0005794|12566589|IDA  go_process nucleotide-sugar metabolic process|GO:0009225||ISS  go_process plant-type cell wall biogenesis|GO:0009832|9301086|IMP  go_process arabinose biosynthetic process|GO:0019567|10517829|IMP  go_process arabinose biosynthetic process|GO:0019567|17693536|IMP  go_function catalytic activity|GO:0003824||ISS  go_function UDP-arabinose 4-epimerase activity|GO:0050373|12566589|IDA  product MUR4 (MURUS 4); UDP-arabinose 4-epimerase/ catalytic  note MURUS 4 (MUR4); FUNCTIONS IN: UDP-arabinose 4-epimerase activity, catalytic activity; INVOLVED IN: plant-type cell wall biogenesis, arabinose biosynthetic process, nucleotide-sugar metabolic process; LOCATED IN: Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886); BEST Arabidopsis thaliana protein match is: NAD-dependent epimerase/dehydratase family protein (TAIR:AT4G20460.2); Has 30162 Blast hits to 30156 proteins in 1698 species: Archae - 464; Bacteria - 14523; Metazoa - 619; Fungi - 396; Plants - 676; Viruses - 26; Other Eukaryotes - 13458 (source: NCBI BLink).  protein_id AT1G30620.1p  transcript_id AT1G30620.1  protein_id AT1G30620.1p  transcript_id AT1G30620.1  
At1g30620	chr1:010855496	0.0	W/10855496-10855556,10855815-10855939,10856041-10856154,10856247-10856446,10856530-10856671,10856752-10856846,10856940-10857069,10857474-10857618,10857723-10857970	AT1G30620.2  CDS  gene_syn HIGH SUGAR RESPONSE8, HSR8, MUR4, MURUS 4, T5I8.7, T5I8_7, UDP-D-XYLOSE 4-EPIMERASE 1, UXE1  gene MUR4  function encodes a type-II membrane protein that catalyzes 4-epimerization of UDP-D-Xylose to UDP-L-Arabinose in vitro, the nucleotide sugar used by glycosyltransferases in the arabinosylation of cell wall polysaccharides and wall-resident proteoglycans.  go_component Golgi apparatus|GO:0005794|12566589|IDA  go_process nucleotide-sugar metabolic process|GO:0009225||ISS  go_process plant-type cell wall biogenesis|GO:0009832|9301086|IMP  go_process arabinose biosynthetic process|GO:0019567|10517829|IMP  go_process arabinose biosynthetic process|GO:0019567|17693536|IMP  go_function catalytic activity|GO:0003824||ISS  go_function UDP-arabinose 4-epimerase activity|GO:0050373|12566589|IDA  product MUR4 (MURUS 4); UDP-arabinose 4-epimerase/ catalytic  note MURUS 4 (MUR4); FUNCTIONS IN: UDP-arabinose 4-epimerase activity, catalytic activity; INVOLVED IN: plant-type cell wall biogenesis, arabinose biosynthetic process, nucleotide-sugar metabolic process; LOCATED IN: Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886); BEST Arabidopsis thaliana protein match is: NAD-dependent epimerase/dehydratase family protein (TAIR:AT4G20460.2); Has 30162 Blast hits to 30156 proteins in 1698 species: Archae - 464; Bacteria - 14523; Metazoa - 619; Fungi - 396; Plants - 676; Viruses - 26; Other Eukaryotes - 13458 (source: NCBI BLink).  protein_id AT1G30620.2p  transcript_id AT1G30620.2  protein_id AT1G30620.2p  transcript_id AT1G30620.2  
At1g30630	chr1:010860003	0.0	C/10860003-10860173,10859824-10859913,10859479-10859630,10859259-10859394,10859011-10859166,10858730-10858809,10858546-10858639	AT1G30630.1  CDS  gene_syn T5I8.8, T5I8_8  go_component plasma membrane|GO:0005886|17151019|IDA  go_process retrograde vesicle-mediated transport, Golgi to ER|GO:0006890||IEA  go_function structural molecule activity|GO:0005198||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_process retrograde vesicle-mediated transport, Golgi to ER|GO:0006890||ISS  go_function protein transporter activity|GO:0008565||ISS  product coatomer protein epsilon subunit family protein / COPE family protein  note coatomer protein epsilon subunit family protein / COPE family protein; FUNCTIONS IN: protein transporter activity, protein binding, structural molecule activity, binding; INVOLVED IN: retrograde vesicle-mediated transport, Golgi to ER; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Coatomer, epsilon subunit (InterPro:IPR006822); BEST Arabidopsis thaliana protein match is: coatomer protein epsilon subunit family protein / COPE family protein (TAIR:AT2G34840.1); Has 326 Blast hits to 326 proteins in 131 species: Archae - 2; Bacteria - 5; Metazoa - 149; Fungi - 59; Plants - 65; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT1G30630.1p  transcript_id AT1G30630.1  protein_id AT1G30630.1p  transcript_id AT1G30630.1  
At1g30640	chr1:010861297	0.0	W/10861297-10861520,10861697-10861871,10862109-10862192,10862309-10862550,10862732-10862963,10863237-10863316,10863396-10863480,10863705-10863836,10863920-10864033,10864133-10864180,10864257-10864341,10864436-10864492,10864570-10864700	AT1G30640.1  CDS  gene_syn T5I8.9, T5I8_9  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_function protein kinase activity|GO:0004672||ISS  go_function kinase activity|GO:0016301|13678909|ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, C-terminal (InterPro:IPR017892), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G14350.3); Has 82196 Blast hits to 81189 proteins in 2930 species: Archae - 64; Bacteria - 7641; Metazoa - 35591; Fungi - 7931; Plants - 14313; Viruses - 376; Other Eukaryotes - 16280 (source: NCBI BLink).  protein_id AT1G30640.1p  transcript_id AT1G30640.1  protein_id AT1G30640.1p  transcript_id AT1G30640.1  
At1g30650	chr1:010868612	0.0	W/10868612-10869180,10869831-10869971,10870391-10870973	AT1G30650.1  CDS  gene_syn AR411, AtWRKY14, T5I8.10, T5I8_10, WRKY14  gene WRKY14  function member of WRKY Transcription Factor; Group II-e  go_component nucleus|GO:0005634|16581911|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY14; transcription factor  note WRKY14; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY group Iie (InterPro:IPR017412); BEST Arabidopsis thaliana protein match is: WRKY35 (WRKY DNA-binding protein 35); transcription factor (TAIR:AT2G34830.1); Has 2000 Blast hits to 1709 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 7; Plants - 1930; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT1G30650.1p  transcript_id AT1G30650.1  protein_id AT1G30650.1p  transcript_id AT1G30650.1  
At1g30660	chr1:010876853	0.0	W/10876853-10876910,10877056-10877189,10877300-10877355,10877458-10877512,10877606-10877698,10877814-10877897,10878049-10878129,10878210-10878275,10878377-10878493,10878577-10878624,10878710-10878856,10878943-10879017	AT1G30660.1  CDS  gene_syn T5I8.11, T5I8_11  go_process DNA metabolic process|GO:0006259||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process DNA modification|GO:0006304||ISS  go_function nucleic acid binding|GO:0003676||ISS  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: DNA modification, DNA metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Toprim subdomain (InterPro:IPR006154); BEST Arabidopsis thaliana protein match is: toprim domain-containing protein (TAIR:AT1G30680.1); Has 504 Blast hits to 504 proteins in 84 species: Archae - 5; Bacteria - 109; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 36; Other Eukaryotes - 334 (source: NCBI BLink).  protein_id AT1G30660.1p  transcript_id AT1G30660.1  protein_id AT1G30660.1p  transcript_id AT1G30660.1  
At1g30670	chr1:010879595	0.0	C/10879595-10880188,10879311-10879511	AT1G30670.1  CDS  gene_syn T5I8.12, T5I8_12  go_component nucleus|GO:0005634|14617066|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT2G34820.1); Has 574 Blast hits to 574 proteins in 29 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 2; Plants - 568; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30670.1p  transcript_id AT1G30670.1  protein_id AT1G30670.1p  transcript_id AT1G30670.1  
At1g30680	chr1:010881665	0.0	W/10881665-10881944,10882178-10882311,10882470-10882525,10882609-10882666,10882764-10882856,10883019-10883102,10883328-10883408,10883515-10883580,10883671-10883787,10883885-10883932,10884008-10884154,10884249-10884431,10884518-10884649,10884732-10884793,10884930-10885013,10885142-10885273,10885350-10885581,10885676-10885743,10885988-10886060	AT1G30680.1  CDS  go_process DNA metabolic process|GO:0006259||IEA  go_process DNA replication|GO:0006260||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA helicase activity|GO:0003678||IEA  go_function ATP binding|GO:0005524||IEA  product toprim domain-containing protein  note toprim domain-containing protein; FUNCTIONS IN: DNA helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: DNA replication, DNA metabolic process; CONTAINS InterPro DOMAIN/s: Toprim subdomain (InterPro:IPR006154), DNA helicase, DnaB-like, C-terminal (InterPro:IPR007694); BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT1G30660.1); Has 875 Blast hits to 869 proteins in 115 species: Archae - 0; Bacteria - 107; Metazoa - 40; Fungi - 0; Plants - 35; Viruses - 109; Other Eukaryotes - 584 (source: NCBI BLink).  protein_id AT1G30680.1p  transcript_id AT1G30680.1  protein_id AT1G30680.1p  transcript_id AT1G30680.1  
At1g30690	chr1:010888284	0.0	W/10888284-10889384,10889471-10889734,10889828-10890085	AT1G30690.1  CDS  gene_syn T5I8.14, T5I8_14  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  note SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), GOLD (InterPro:IPR009038), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT4G09160.1); Has 52659 Blast hits to 27496 proteins in 1404 species: Archae - 277; Bacteria - 6323; Metazoa - 18776; Fungi - 4501; Plants - 1964; Viruses - 383; Other Eukaryotes - 20435 (source: NCBI BLink).  protein_id AT1G30690.1p  transcript_id AT1G30690.1  protein_id AT1G30690.1p  transcript_id AT1G30690.1  
At1g30690	chr1:010888284	0.0	W/10888284-10889384,10889471-10889734,10889828-10890085	AT1G30690.2  CDS  gene_syn T5I8.14, T5I8_14  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  note SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), GOLD (InterPro:IPR009038), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT4G09160.1); Has 52659 Blast hits to 27496 proteins in 1404 species: Archae - 277; Bacteria - 6323; Metazoa - 18776; Fungi - 4501; Plants - 1964; Viruses - 383; Other Eukaryotes - 20435 (source: NCBI BLink).  protein_id AT1G30690.2p  transcript_id AT1G30690.2  protein_id AT1G30690.2p  transcript_id AT1G30690.2  
At1g30700	chr1:010892623	0.0	W/10892623-10893250,10893482-10894437	AT1G30700.1  CDS  gene_syn T5I8.15, T5I8_15  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function electron carrier activity|GO:0009055||ISS  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: stem, hypocotyl, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT4G20830.2); Has 2759 Blast hits to 2741 proteins in 499 species: Archae - 11; Bacteria - 1200; Metazoa - 0; Fungi - 1065; Plants - 335; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink).  protein_id AT1G30700.1p  transcript_id AT1G30700.1  protein_id AT1G30700.1p  transcript_id AT1G30700.1  
At1g30710	chr1:010895280	0.0	W/10895280-10896875	AT1G30710.1  CDS  gene_syn T5I8.16, T5I8_16  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function electron carrier activity|GO:0009055||ISS  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT1G34575.1); Has 2393 Blast hits to 2352 proteins in 381 species: Archae - 6; Bacteria - 874; Metazoa - 0; Fungi - 1058; Plants - 338; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT1G30710.1p  transcript_id AT1G30710.1  protein_id AT1G30710.1p  transcript_id AT1G30710.1  
At1g30720	chr1:010898197	0.0	W/10898197-10899780	AT1G30720.1  CDS  gene_syn T5I8.17, T5I8_17  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function electron carrier activity|GO:0009055||ISS  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT1G30730.1); Has 2312 Blast hits to 2301 proteins in 375 species: Archae - 6; Bacteria - 828; Metazoa - 0; Fungi - 1018; Plants - 369; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).  protein_id AT1G30720.1p  transcript_id AT1G30720.1  protein_id AT1G30720.1p  transcript_id AT1G30720.1  
At1g30730	chr1:010900854	0.0	W/10900854-10902434	AT1G30730.1  CDS  gene_syn T5I8.18, T5I8_18  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function electron carrier activity|GO:0009055||ISS  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT1G30720.1); Has 2836 Blast hits to 2826 proteins in 501 species: Archae - 26; Bacteria - 1106; Metazoa - 7; Fungi - 1085; Plants - 423; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).  protein_id AT1G30730.1p  transcript_id AT1G30730.1  protein_id AT1G30730.1p  transcript_id AT1G30730.1  
At1g30740	chr1:010903029	0.0	W/10903029-10904630	AT1G30740.1  CDS  gene_syn T5I8.19, T5I8_19  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function electron carrier activity|GO:0009055||ISS  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: ATSEC1A; FAD binding / catalytic/ electron carrier/ oxidoreductase (TAIR:AT1G01980.1); Has 2830 Blast hits to 2698 proteins in 479 species: Archae - 8; Bacteria - 1236; Metazoa - 1; Fungi - 1125; Plants - 347; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).  protein_id AT1G30740.1p  transcript_id AT1G30740.1  protein_id AT1G30740.1p  transcript_id AT1G30740.1  
At1g30750	chr1:010905050	0.0	C/10905050-10905688	AT1G30750.1  CDS  gene_syn T5I8.20  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root, pollen tube; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1720 (InterPro:IPR013182); Has 1056 Blast hits to 518 proteins in 153 species: Archae - 0; Bacteria - 268; Metazoa - 168; Fungi - 142; Plants - 17; Viruses - 16; Other Eukaryotes - 445 (source: NCBI BLink).  protein_id AT1G30750.1p  transcript_id AT1G30750.1  protein_id AT1G30750.1p  transcript_id AT1G30750.1  
At1g30755	chr1:010908525	0.0	C/10908525-10908773,10908098-10908426,10907925-10908017,10907737-10907827,10907560-10907653,10907386-10907483,10907240-10907309,10907053-10907150,10906856-10906972,10906684-10906760,10906563-10906607,10905991-10906477	AT1G30755.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF668 (InterPro:IPR007700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34320.1); Has 262 Blast hits to 228 proteins in 50 species: Archae - 0; Bacteria - 7; Metazoa - 53; Fungi - 15; Plants - 160; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT1G30755.1p  transcript_id AT1G30755.1  protein_id AT1G30755.1p  transcript_id AT1G30755.1  
At1g30757	chr1:010909287	0.0	W/10909287-10909391	AT1G30757.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30757.1p  transcript_id AT1G30757.1  protein_id AT1G30757.1p  transcript_id AT1G30757.1  
At1g30760	chr1:010918321	0.0	W/10918321-10918817,10919198-10919684,10919821-10920441	AT1G30760.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function electron carrier activity|GO:0009055||ISS  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, pedicel, flower, root; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: MEE23 (MATERNAL EFFECT EMBRYO ARREST 23); FAD binding / catalytic/ electron carrier/ oxidoreductase (TAIR:AT2G34790.1); Has 3105 Blast hits to 3071 proteins in 519 species: Archae - 32; Bacteria - 1387; Metazoa - 30; Fungi - 1091; Plants - 347; Viruses - 0; Other Eukaryotes - 218 (source: NCBI BLink).  protein_id AT1G30760.1p  transcript_id AT1G30760.1  protein_id AT1G30760.1p  transcript_id AT1G30760.1  
At1g30780	chr1:010926107	0.0	C/10926107-10926561,10925182-10925580,10924365-10924691,10924160-10924290,10923919-10924055	AT1G30780.1  CDS  gene_syn T17H7.3, T17H7_3  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G30790.1); Has 2732 Blast hits to 1596 proteins in 186 species: Archae - 2; Bacteria - 159; Metazoa - 678; Fungi - 148; Plants - 1244; Viruses - 151; Other Eukaryotes - 350 (source: NCBI BLink).  protein_id AT1G30780.1p  transcript_id AT1G30780.1  protein_id AT1G30780.1p  transcript_id AT1G30780.1  
At1g30784	chr1:010929536	0.0	C/10929536-10930090	AT1G30784.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G01080; beta-galactosidase  
At1g30790	chr1:010932713	0.0	W/10932713-10933912	AT1G30790.1  CDS  gene_syn T17H7.6, T17H7_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G32660.1); Has 1008 Blast hits to 974 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1008; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30790.1p  transcript_id AT1G30790.1  protein_id AT1G30790.1p  transcript_id AT1G30790.1  
At1g30795	chr1:010935831	0.0	W/10935831-10936160	AT1G30795.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 34 Blast hits to 32 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 20; Viruses - 2; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G30795.1p  transcript_id AT1G30795.1  protein_id AT1G30795.1p  transcript_id AT1G30795.1  
At1g30800	chr1:010936995	0.0	W/10936995-10937714	AT1G30800.1  CDS  gene_syn T17H7.8, T17H7_8  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29980.1); Has 38 Blast hits to 38 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G30800.1p  transcript_id AT1G30800.1  protein_id AT1G30800.1p  transcript_id AT1G30800.1  
At1g30810	chr1:010941470	0.0	C/10941470-10941505,10941019-10941105,10940843-10940920,10940041-10940757,10939418-10939951,10938748-10939321,10938377-10938660,10938139-10938288	AT1G30810.1  CDS  gene_syn T17H7.10, T17H7_10  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), FY-rich, C-terminal (InterPro:IPR003889), FY-rich, N-terminal (InterPro:IPR003888), Transcription factor jumonji, JmjN (InterPro:IPR003349), Zinc finger, C5HC2-type (InterPro:IPR004198), FY-rich, C-terminal subgroup (InterPro:IPR018516), Transcription factor jumonji (InterPro:IPR013129), FY-rich, N-terminal subgroup (InterPro:IPR018518); BEST Arabidopsis thaliana protein match is: MEE27 (maternal effect embryo arrest 27); transcription factor (TAIR:AT2G34880.1); Has 1543 Blast hits to 1140 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 960; Fungi - 297; Plants - 152; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).  protein_id AT1G30810.1p  transcript_id AT1G30810.1  protein_id AT1G30810.1p  transcript_id AT1G30810.1  
At1g30814	chr1:010944078	0.0	C/10944078-10944225,10943868-10943984,10943644-10943750,10943139-10943561	AT1G30814.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); Has 71 Blast hits to 71 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 8; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G30814.2p  transcript_id AT1G30814.2  protein_id AT1G30814.2p  transcript_id AT1G30814.2  
At1g30814	chr1:010944078	0.0	C/10944078-10944225,10943868-10943984,10943644-10943750,10943154-10943561,10943007-10943060,10942826-10942909	AT1G30814.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); Has 78 Blast hits to 78 proteins in 19 species: Archae - 0; Bacteria - 2; Metazoa - 13; Fungi - 2; Plants - 53; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G30814.1p  transcript_id AT1G30814.1  protein_id AT1G30814.1p  transcript_id AT1G30814.1  
At1g30814	chr1:010944078	0.0	C/10944078-10944225,10943868-10943984,10943644-10943750,10943154-10943561,10943007-10943060,10942826-10942909	AT1G30814.3  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); Has 78 Blast hits to 78 proteins in 19 species: Archae - 0; Bacteria - 2; Metazoa - 13; Fungi - 2; Plants - 53; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G30814.3p  transcript_id AT1G30814.3  protein_id AT1G30814.3p  transcript_id AT1G30814.3  
At1g30820	chr1:010948708	0.0	C/10948708-10948825,10948550-10948629,10948368-10948454,10948225-10948275,10948025-10948142,10947884-10947940,10947712-10947776,10947534-10947617,10947372-10947422,10947227-10947289,10947099-10947145,10946938-10947007,10946797-10946859,10946616-10946705,10946484-10946522,10946176-10946403,10946001-10946086,10945859-10945907,10945697-10945777,10945516-10945609,10945251-10945432	AT1G30820.1  CDS  gene_syn T17H7.12, T17H7_12  go_process pyrimidine nucleotide biosynthetic process|GO:0006221||IEA  go_process pyrimidine ribonucleotide metabolic process|GO:0009218||IEA  go_function catalytic activity|GO:0003824||IEA  go_function CTP synthase activity|GO:0003883||IEA  go_function CTP synthase activity|GO:0003883||ISS  product CTP synthase, putative / UTP--ammonia ligase, putative  note CTP synthase, putative / UTP--ammonia ligase, putative; FUNCTIONS IN: CTP synthase activity, catalytic activity; INVOLVED IN: pyrimidine ribonucleotide metabolic process, pyrimidine nucleotide biosynthetic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), CTP synthase (InterPro:IPR004468), CTP synthase, N-terminal (InterPro:IPR017456), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: CTP synthase/ catalytic (TAIR:AT4G20320.2); Has 8060 Blast hits to 8030 proteins in 1726 species: Archae - 146; Bacteria - 2991; Metazoa - 225; Fungi - 172; Plants - 89; Viruses - 0; Other Eukaryotes - 4437 (source: NCBI BLink).  protein_id AT1G30820.1p  transcript_id AT1G30820.1  protein_id AT1G30820.1p  transcript_id AT1G30820.1  
At1g30825	chr1:010961106	0.0	W/10961106-10961167,10961358-10961424,10961518-10961725,10961821-10961978,10962082-10962159,10962238-10962370,10962467-10962558,10962685-10962741,10962812-10962877,10962964-10962999	AT1G30825.1  CDS  gene_syn ACTIN-RELATED PROTEIN C2A, ARPC2A, DIS2, DISTORTED TRICHOMES 2  gene DIS2  function Involved in trichome maturation. mutant displays enlarged trichomes  go_component Arp2/3 protein complex|GO:0005885|15653407|TAS  go_process actin filament organization|GO:0007015|10572033|TAS  go_process trichome morphogenesis|GO:0010090|1843415|NAS  go_function structural molecule activity|GO:0005198||ISS  product DIS2 (DISTORTED TRICHOMES 2); structural molecule  note DISTORTED TRICHOMES 2 (DIS2); FUNCTIONS IN: structural molecule activity; INVOLVED IN: actin filament organization, trichome morphogenesis; LOCATED IN: Arp2/3 protein complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arp2/3 complex, 34kDa subunit p34-Arc (InterPro:IPR007188); BEST Arabidopsis thaliana protein match is: arpc2b (actin-related protein C2B); structural molecule (TAIR:AT2G33385.1); Has 274 Blast hits to 274 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 124; Fungi - 87; Plants - 29; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT1G30825.1p  transcript_id AT1G30825.1  protein_id AT1G30825.1p  transcript_id AT1G30825.1  
At1g30830	chr1:010963573	0.0	C/10963573-10963646	AT1G30830.1  tRNA  gene_syn 50967.TRNA-VAL-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Val (anticodon: AAC)  transcript_id AT1G30830.1  
At1g30835	chr1:010966907	0.0	W/10966907-10968851	AT1G30835.1  mRNA_TE_gene  pseudo  gene_syn SADHU NON-CODING RETROTRANSPOSON, SADHU1-2  gene SADHU1-2  function Member of Sadhu non-coding retrotransposon family  note Transposable element gene  
At1g30835	chr1:010966907	0.0	W/10966907-10968878	AT1G30835.2  mRNA_TE_gene  pseudo  gene_syn SADHU NON-CODING RETROTRANSPOSON, SADHU1-2  gene SADHU1-2  function Member of Sadhu non-coding retrotransposon family  note Transposable element gene  transcript_id AT1G30835.2  
At1g30840	chr1:010974581	0.0	W/10974581-10975729	AT1G30840.1  CDS  gene_syn ATPUP4, T17H7.15, T17H7_15  gene ATPUP4  function Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.  go_component membrane|GO:0016020|10662864|TAS  go_process purine transport|GO:0006863|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345||ISS  product ATPUP4; purine transmembrane transporter  note ATPUP4; FUNCTIONS IN: purine transmembrane transporter activity; INVOLVED IN: purine transport; LOCATED IN: membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: PUP1 (PURINE PERMEASE 1); purine nucleoside transmembrane transporter/ purine transmembrane transporter (TAIR:AT1G28230.1); Has 400 Blast hits to 393 proteins in 76 species: Archae - 5; Bacteria - 67; Metazoa - 35; Fungi - 5; Plants - 211; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT1G30840.1p  transcript_id AT1G30840.1  protein_id AT1G30840.1p  transcript_id AT1G30840.1  
At1g30845	chr1:010979856	0.0	W/10979856-10979957,10980044-10980214,10980344-10980427	AT1G30845.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 71 Blast hits to 71 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 19; Plants - 11; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G30845.1p  transcript_id AT1G30845.1  protein_id AT1G30845.1p  transcript_id AT1G30845.1  
At1g30850	chr1:010985116	0.0	W/10985116-10986018	AT1G30850.1  CDS  gene_syn T17H7.17, T17H7_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34910.1); Has 26 Blast hits to 25 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30850.1p  transcript_id AT1G30850.1  protein_id AT1G30850.1p  transcript_id AT1G30850.1  
At1g30860	chr1:010988494	0.0	C/10988494-10989246,10988276-10988394,10987505-10988188,10987099-10987420,10986696-10987010	AT1G30860.1  CDS  gene_syn T17H7.18  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: stem, pollen tube, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: EDA18 (embryo sac development arrest 18); protein binding / zinc ion binding (TAIR:AT2G34920.1); Has 4323 Blast hits to 3617 proteins in 281 species: Archae - 9; Bacteria - 116; Metazoa - 1982; Fungi - 233; Plants - 277; Viruses - 96; Other Eukaryotes - 1610 (source: NCBI BLink).  protein_id AT1G30860.1p  transcript_id AT1G30860.1  protein_id AT1G30860.1p  transcript_id AT1G30860.1  
At1g30870	chr1:010991535	0.0	W/10991535-10991822,10992124-10992885	AT1G30870.1  CDS  gene_syn T17H7.19  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product cationic peroxidase, putative  note cationic peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT1G49570.1); Has 3070 Blast hits to 3058 proteins in 234 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 288; Plants - 2733; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G30870.1p  transcript_id AT1G30870.1  protein_id AT1G30870.1p  transcript_id AT1G30870.1  
At1g30880	chr1:010993822	0.0	C/10993822-10994056,10993379-10993506	AT1G30880.1  CDS  gene_syn F17F8.25  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30880.1p  transcript_id AT1G30880.1  protein_id AT1G30880.1p  transcript_id AT1G30880.1  
At1g30890	chr1:010994890	0.0	W/10994890-10995060,10995144-10995242,10995338-10995489,10995612-10995999	AT1G30890.1  CDS  gene_syn F17F8.24  go_component integral to membrane|GO:0016021||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane HRF1 family protein  note integral membrane HRF1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Hrf1 (InterPro:IPR005578); BEST Arabidopsis thaliana protein match is: integral membrane HRF1 family protein (TAIR:AT3G59500.1); Has 338 Blast hits to 338 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 169; Fungi - 89; Plants - 40; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT1G30890.1p  transcript_id AT1G30890.1  protein_id AT1G30890.1p  transcript_id AT1G30890.1  
At1g30890	chr1:010994890	0.0	W/10994890-10995060,10995144-10995242,10995338-10995489,10995612-10995999	AT1G30890.2  CDS  gene_syn F17F8.24  go_component integral to membrane|GO:0016021||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane HRF1 family protein  note integral membrane HRF1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Hrf1 (InterPro:IPR005578); BEST Arabidopsis thaliana protein match is: integral membrane HRF1 family protein (TAIR:AT3G59500.1); Has 338 Blast hits to 338 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 169; Fungi - 89; Plants - 40; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT1G30890.2p  transcript_id AT1G30890.2  protein_id AT1G30890.2p  transcript_id AT1G30890.2  
At1g30900	chr1:010997275	0.0	W/10997275-10997569,10998088-10998780,10998853-10998941,10999027-10999096,10999178-10999261,10999350-10999426,10999508-10999589,10999674-10999756,10999844-10999907,10999984-11000112,11000199-11000302,11000418-11000543	AT1G30900.1  CDS  gene_syn F17F8.23  go_function calcium ion binding|GO:0005509||IEA  go_component integral to plasma membrane|GO:0005887||ISS  go_component Golgi transport complex|GO:0017119|10888666|IPI  go_process protein targeting to vacuole|GO:0006623|10871276|TAS  go_process protein targeting to vacuole|GO:0006623||ISS  product vacuolar sorting receptor, putative  note vacuolar sorting receptor, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: protein targeting to vacuole; LOCATED IN: integral to plasma membrane, Golgi transport complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-like calcium-binding (InterPro:IPR001881), Growth factor, receptor (InterPro:IPR009030); BEST Arabidopsis thaliana protein match is: vacuolar sorting receptor, putative (TAIR:AT2G34940.1); Has 11009 Blast hits to 5251 proteins in 178 species: Archae - 2; Bacteria - 38; Metazoa - 10235; Fungi - 4; Plants - 219; Viruses - 0; Other Eukaryotes - 511 (source: NCBI BLink).  protein_id AT1G30900.1p  transcript_id AT1G30900.1  protein_id AT1G30900.1p  transcript_id AT1G30900.1  
At1g30910	chr1:011000912	0.0	W/11000912-11001047,11001471-11001620,11001708-11001884,11001984-11002072,11002138-11002202,11002279-11002381,11002484-11002594,11002676-11002801	AT1G30910.1  CDS  gene_syn F17F8.22  go_component chloroplast|GO:0009507||IEA  go_function catalytic activity|GO:0003824||IEA  go_function molybdenum ion binding|GO:0030151||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_process biological_process|GO:0008150||ND  go_function Mo-molybdopterin cofactor sulfurase activity|GO:0008265||ISS  product molybdenum cofactor sulfurase family protein  note molybdenum cofactor sulfurase family protein; FUNCTIONS IN: molybdenum ion binding, Mo-molybdopterin cofactor sulfurase activity, pyridoxal phosphate binding, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), MOSC, N-terminal beta barrel (InterPro:IPR005303), Molybdenum cofactor sulfurase, C-terminal (InterPro:IPR005302); BEST Arabidopsis thaliana protein match is: molybdenum cofactor sulfurase family protein (TAIR:AT5G44720.1); Has 1290 Blast hits to 1272 proteins in 428 species: Archae - 6; Bacteria - 645; Metazoa - 290; Fungi - 172; Plants - 53; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).  protein_id AT1G30910.1p  transcript_id AT1G30910.1  protein_id AT1G30910.1p  transcript_id AT1G30910.1  
At1g30920	chr1:011004242	0.0	C/11004242-11005444	AT1G30920.1  CDS  gene_syn F17F8.21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G42430.1); Has 758 Blast hits to 718 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 758; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30920.1p  transcript_id AT1G30920.1  protein_id AT1G30920.1p  transcript_id AT1G30920.1  
At1g30921	chr1:011007112	0.0	C/11007112-11008238	AT1G30921.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At1g30925	chr1:011011196	0.0	C/11011196-11011792,11010436-11010547,11009888-11010303	AT1G30925.1  CDS  gene_syn F17F8.41, F17F8_41  go_process lipid metabolic process|GO:0006629||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_function phospholipase C activity|GO:0004629||IEA  go_component cellular_component|GO:0005575||ND  product phospholipase C  note phospholipase C; FUNCTIONS IN: phospholipase C activity; INVOLVED IN: intracellular signaling cascade, lipid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific , X region (InterPro:IPR000909), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G33020.1).  protein_id AT1G30925.1p  transcript_id AT1G30925.1  protein_id AT1G30925.1p  transcript_id AT1G30925.1  
At1g30930	chr1:011014783	0.0	C/11014783-11015913	AT1G30930.1  CDS  gene_syn F17F8.42, F17F8_42  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G33020.1); Has 517 Blast hits to 495 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 517; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30930.1p  transcript_id AT1G30930.1  protein_id AT1G30930.1p  transcript_id AT1G30930.1  
At1g30935	chr1:011017436	0.0	C/11017436-11018990	AT1G30935.1  pseudogenic_transcript  pseudo  gene_syn F17F8.20  note pseudogene, F-box protein family, contains F-box domain Pfam:PF00646  
At1g30940	chr1:011021984	0.0	C/11021984-11023320	AT1G30940.1  pseudogenic_transcript  pseudo  gene_syn F17F8.19  note pseudogene, F-box protein -related, contains TIGRfam:TIGR01640 F-box protein interaction domain  
At1g30945	chr1:011026338	0.0	C/11026338-11026784	AT1G30945.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At1g30950	chr1:011036180	0.0	W/11036180-11037508	AT1G30950.1  CDS  gene_syn F17F8.16, UFO, UNUSUAL FLORAL ORGANS  gene UFO  function Required for the proper identity of the floral meristem. Involved in establishing the whorled pattern of floral organs, in the control of specification of the floral meristem, and in the activation of APETALA3 and PISTILLATA. UFO is found at the AP3 promoter in a LFY-dependent manner, suggesting that it works with LFY to regulate AP3 expression. UFO may also promote the ubiquitylation of LFY.  go_component ubiquitin ligase complex|GO:0000151|10607296|IPI  go_process regulation of transcription, DNA-dependent|GO:0006355|18287201|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process meristem structural organization|GO:0009933|10607296|IMP  go_process SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|GO:0031146|15047903|IGI  go_function ubiquitin-protein ligase activity|GO:0004842|18287201|IMP  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function transcription factor binding|GO:0008134|18287201|IPI  product UFO (UNUSUAL FLORAL ORGANS); transcription factor binding / ubiquitin-protein ligase  note UNUSUAL FLORAL ORGANS (UFO); FUNCTIONS IN: ubiquitin-protein ligase activity, transcription factor binding; INVOLVED IN: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process, meristem structural organization, regulation of transcription, DNA-dependent, ubiquitin-dependent protein catabolic process; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: shoot apex, embryo, floral meristem, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G15710.1); Has 278 Blast hits to 278 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 278; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30950.1p  transcript_id AT1G30950.1  protein_id AT1G30950.1p  transcript_id AT1G30950.1  
At1g30960	chr1:011039459	0.0	C/11039459-11039977,11039173-11039262,11038920-11039065,11038428-11038586,11038159-11038333,11037926-11038065,11037755-11037839	AT1G30960.1  CDS  gene_syn F17F8.15  go_function RNA binding|GO:0003723||IEA  go_function GTP binding|GO:0005525||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_function GTP binding|GO:0005525||ISS  product GTP-binding protein (ERG)  note GTP-binding protein (ERG); FUNCTIONS IN: RNA binding, GTP binding; LOCATED IN: cytosol; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, prokaryotic type (InterPro:IPR009019), K Homology, type 2 (InterPro:IPR004044), Small GTP-binding protein (InterPro:IPR005225), GTP-binding protein Era (InterPro:IPR005662), GTP-binding protein, HSR1-related (InterPro:IPR002917), K homology-like, alpha/beta (InterPro:IPR015946); BEST Arabidopsis thaliana protein match is: GTP binding / RNA binding (TAIR:AT5G66470.1); Has 13331 Blast hits to 12332 proteins in 1608 species: Archae - 46; Bacteria - 8318; Metazoa - 351; Fungi - 89; Plants - 122; Viruses - 0; Other Eukaryotes - 4405 (source: NCBI BLink).  protein_id AT1G30960.1p  transcript_id AT1G30960.1  protein_id AT1G30960.1p  transcript_id AT1G30960.1  
At1g30970	chr1:011043396	0.0	C/11043396-11043433,11042848-11042948,11042483-11042612,11041607-11042016,11041371-11041513,11041204-11041257,11040613-11040684	AT1G30970.2  CDS  gene_syn F17F8.14, SUF4, suppressor of FRIGIDA4  gene SUF4  function Encodes SUF4 (SUPPRESSOR of FRI 4), a putative zinc-finger-containing transcription factor that is required for delayed flowering in winter-annual Arabidopsis. suf4 mutations strongly suppress the late-flowering phenotype of FRI (FRIGIDA) mutants. suf4 mutants also show reduced H3K4 trimethylation at FLC (FLOWERING LOCUS C), a floral inhibitor. SUF4 may act to specifically recruit a putative histone H3 methyltransferase EFS (EARLY FLOWERING IN SHORT DAYS) and the PAF1-like complex to the FLC locus.  go_component nucleus|GO:0005634|17079264|IDA  go_component nucleus|GO:0005634|17138694|IDA  go_process negative regulation of flower development|GO:0009910|17079264|IGI  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process regulation of transcription|GO:0045449|17138694|IMP  go_process histone H3-K4 methylation|GO:0051568|17079264|IDA  go_function DNA binding|GO:0003677|17138694|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein homodimerization activity|GO:0042803|17138694|IPI  go_function protein heterodimerization activity|GO:0046982|17138694|IPI  product SUF4 (suppressor of FRIGIDA4); DNA binding / protein heterodimerization/ protein homodimerization/ transcription factor  note suppressor of FRIGIDA4 (SUF4); FUNCTIONS IN: transcription factor activity, protein heterodimerization activity, protein homodimerization activity, DNA binding; INVOLVED IN: histone H3-K4 methylation, negative regulation of flower development, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: late embryogenesis abundant protein-related / LEA protein-related (TAIR:AT3G19430.1); Has 18571 Blast hits to 12304 proteins in 775 species: Archae - 31; Bacteria - 2361; Metazoa - 8002; Fungi - 2676; Plants - 2885; Viruses - 618; Other Eukaryotes - 1998 (source: NCBI BLink).  protein_id AT1G30970.2p  transcript_id AT1G30970.2  protein_id AT1G30970.2p  transcript_id AT1G30970.2  
At1g30970	chr1:011043400	0.0	C/11043400-11043593,11042848-11042948,11042483-11042612,11041607-11042016,11041371-11041513,11041204-11041257,11040613-11040684	AT1G30970.1  CDS  gene_syn F17F8.14, SUF4, suppressor of FRIGIDA4  gene SUF4  function Encodes SUF4 (SUPPRESSOR of FRI 4), a putative zinc-finger-containing transcription factor that is required for delayed flowering in winter-annual Arabidopsis. suf4 mutations strongly suppress the late-flowering phenotype of FRI (FRIGIDA) mutants. suf4 mutants also show reduced H3K4 trimethylation at FLC (FLOWERING LOCUS C), a floral inhibitor. SUF4 may act to specifically recruit a putative histone H3 methyltransferase EFS (EARLY FLOWERING IN SHORT DAYS) and the PAF1-like complex to the FLC locus.  go_component nucleus|GO:0005634|17079264|IDA  go_component nucleus|GO:0005634|17138694|IDA  go_process negative regulation of flower development|GO:0009910|17079264|IGI  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process regulation of transcription|GO:0045449|17138694|IMP  go_process histone H3-K4 methylation|GO:0051568|17079264|IDA  go_function DNA binding|GO:0003677|17138694|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein homodimerization activity|GO:0042803|17138694|IPI  go_function protein heterodimerization activity|GO:0046982|17138694|IPI  product SUF4 (suppressor of FRIGIDA4); DNA binding / protein heterodimerization/ protein homodimerization/ transcription factor  note suppressor of FRIGIDA4 (SUF4); FUNCTIONS IN: transcription factor activity, protein heterodimerization activity, protein homodimerization activity, DNA binding; INVOLVED IN: histone H3-K4 methylation, negative regulation of flower development, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, BED-type predicted (InterPro:IPR003656), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: late embryogenesis abundant protein-related / LEA protein-related (TAIR:AT3G19430.1); Has 18843 Blast hits to 12577 proteins in 789 species: Archae - 33; Bacteria - 2407; Metazoa - 8110; Fungi - 2711; Plants - 2911; Viruses - 628; Other Eukaryotes - 2043 (source: NCBI BLink).  protein_id AT1G30970.1p  transcript_id AT1G30970.1  protein_id AT1G30970.1p  transcript_id AT1G30970.1  
At1g30972	chr1:011044671	0.0	W/11044671-11044887,11045300-11045316	AT1G30972.2  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30974.2); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30972.2p  transcript_id AT1G30972.2  protein_id AT1G30972.2p  transcript_id AT1G30972.2  
At1g30972	chr1:011044671	0.0	W/11044671-11044910	AT1G30972.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30974.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30972.1p  transcript_id AT1G30972.1  protein_id AT1G30972.1p  transcript_id AT1G30972.1  
At1g30974	chr1:011047031	0.0	W/11047031-11047247,11047659-11047675	AT1G30974.2  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30972.2); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30974.2p  transcript_id AT1G30974.2  protein_id AT1G30974.2p  transcript_id AT1G30974.2  
At1g30974	chr1:011047031	0.0	W/11047031-11047270	AT1G30974.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30972.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30974.1p  transcript_id AT1G30974.1  protein_id AT1G30974.1p  transcript_id AT1G30974.1  
At1g30975	chr1:011048256	0.0	C/11048256-11048552	AT1G30975.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At1g30980	chr1:011049583	0.0	C/11049583-11050729	AT1G30980.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 4.2e-21 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g30990	chr1:011052130	0.0	W/11052130-11052316,11052792-11053063	AT1G30990.1  CDS  gene_syn F17F8.9  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product major latex protein-related / MLP-related  note major latex protein-related / MLP-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, root; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: major latex protein-related / MLP-related (TAIR:AT1G14960.1); Has 208 Blast hits to 187 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 208; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30990.1p  transcript_id AT1G30990.1  protein_id AT1G30990.1p  transcript_id AT1G30990.1  
At1g31000	chr1:011054308	0.0	C/11054308-11054561,11053377-11054214	AT1G31000.1  CDS  gene_syn F17F8.8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G11590.1); Has 497 Blast hits to 485 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 497; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31000.1p  transcript_id AT1G31000.1  protein_id AT1G31000.1p  transcript_id AT1G31000.1  
At1g31010	chr1:011056515	0.0	C/11056515-11056873,11055803-11056074,11055586-11055689,11055351-11055486,11055149-11055216,11054926-11055069	AT1G31010.1  CDS  gene_syn F17F8.7, OSB4, organellar single-stranded DNA binding protein 4  gene OSB4  go_component chloroplast|GO:0009507||IEA  go_function single-stranded DNA binding|GO:0003697||IEA  go_process biological_process|GO:0008150||ND  product OSB4 (organellar single-stranded DNA binding protein 4); single-stranded DNA binding  note organellar single-stranded DNA binding protein 4 (OSB4); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Primosome PriB/single-strand DNA-binding (InterPro:IPR000424); BEST Arabidopsis thaliana protein match is: PTAC9 (PLASTID TRANSCRIPTIONALLY ACTIVE 9); single-stranded DNA binding (TAIR:AT4G20010.1); Has 125 Blast hits to 85 proteins in 15 species: Archae - 0; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 106; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G31010.1p  transcript_id AT1G31010.1  protein_id AT1G31010.1p  transcript_id AT1G31010.1  
At1g31020	chr1:011057252	0.0	W/11057252-11057281,11057361-11057469,11057671-11057736,11057851-11057901,11057986-11058065,11058421-11058465,11058605-11058703	AT1G31020.1  CDS  gene_syn ATO2, Arabidopsis thioredoxin o2, F17F8.6  gene ATO2  go_process cell redox homeostasis|GO:0045454||IEA  product ATO2 (Arabidopsis thioredoxin o2)  note Arabidopsis thioredoxin o2 (ATO2); INVOLVED IN: cell redox homeostasis; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATO1 (Arabidopsis thioredoxin O1) (TAIR:AT2G35010.2); Has 8280 Blast hits to 8267 proteins in 1604 species: Archae - 109; Bacteria - 3630; Metazoa - 858; Fungi - 399; Plants - 738; Viruses - 3; Other Eukaryotes - 2543 (source: NCBI BLink).  protein_id AT1G31020.1p  transcript_id AT1G31020.1  protein_id AT1G31020.1p  transcript_id AT1G31020.1  
At1g31030	chr1:011064583	0.0	C/11064583-11067201	AT1G31030.1  mRNA_TE_gene  pseudo  gene_syn F17F8.5  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.0e-41 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At1g31040	chr1:011071970	0.0	C/11071970-11072182,11070854-11070928,11070642-11070779,11069793-11070098	AT1G31040.1  CDS  gene_syn F17F8.4  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G12646.1); Has 192 Blast hits to 192 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 192; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31040.1p  transcript_id AT1G31040.1  protein_id AT1G31040.1p  transcript_id AT1G31040.1  
At1g31050	chr1:011077478	0.0	C/11077478-11078008,11076820-11076936,11076390-11076458,11076109-11076198	AT1G31050.1  CDS  gene_syn F17F8.3  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: sperm cell, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT4G05170.1); Has 66 Blast hits to 66 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31050.1p  transcript_id AT1G31050.1  protein_id AT1G31050.1p  transcript_id AT1G31050.1  
At1g31060	chr1:011078820	0.0	C/11078820-11079140	AT1G31060.1  CDS  gene_syn F17F8.2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31060.1p  transcript_id AT1G31060.1  protein_id AT1G31060.1p  transcript_id AT1G31060.1  
At1g31070	chr1:011084951	0.0	W/11084951-11085157,11085267-11085321,11085398-11085549,11086287-11086326,11086435-11086527,11086626-11086738,11086823-11086897,11086979-11087018,11087108-11087190,11087273-11087350,11087440-11087583,11087669-11087736,11087804-11087918,11088005-11088161,11088264-11088361	AT1G31070.2  CDS  gene_syn F17F8.1  go_component plasma membrane|GO:0005886|17644812|IDA  go_process metabolic process|GO:0008152||IEA  go_function nucleotidyltransferase activity|GO:0016779||IEA  product UDP-N-acetylglucosamine pyrophosphorylase-related  note UDP-N-acetylglucosamine pyrophosphorylase-related; FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UTP--glucose-1-phosphate uridylyltransferase (InterPro:IPR002618); BEST Arabidopsis thaliana protein match is: UTP--glucose-1-phosphate uridylyltransferase family protein (TAIR:AT2G35020.1); Has 900 Blast hits to 897 proteins in 225 species: Archae - 0; Bacteria - 133; Metazoa - 353; Fungi - 180; Plants - 82; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).  protein_id AT1G31070.2p  transcript_id AT1G31070.2  protein_id AT1G31070.2p  transcript_id AT1G31070.2  
At1g31070	chr1:011084951	0.0	W/11084951-11085157,11085267-11085321,11085398-11085549,11086287-11086334	AT1G31070.1  CDS  gene_syn F17F8.1  go_component plasma membrane|GO:0005886|17644812|IDA  go_process metabolic process|GO:0008152||IEA  go_process peptidoglycan biosynthetic process|GO:0009252||IEA  go_process UDP-N-acetylgalactosamine biosynthetic process|GO:0019277||IEA  go_function nucleotidyltransferase activity|GO:0016779||IEA  product UDP-N-acetylglucosamine pyrophosphorylase-related  note UDP-N-acetylglucosamine pyrophosphorylase-related; FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: peptidoglycan biosynthetic process, metabolic process, UDP-N-acetylgalactosamine biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UTP--glucose-1-phosphate uridylyltransferase (InterPro:IPR002618); BEST Arabidopsis thaliana protein match is: UTP--glucose-1-phosphate uridylyltransferase family protein (TAIR:AT2G35020.1); Has 409 Blast hits to 409 proteins in 167 species: Archae - 0; Bacteria - 97; Metazoa - 158; Fungi - 96; Plants - 35; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G31070.1p  transcript_id AT1G31070.1  protein_id AT1G31070.1p  transcript_id AT1G31070.1  
At1g31072	chr1:011089491	0.0	W/11089491-11089925	AT1G31072.1  pseudogenic_transcript  pseudo  function pseudogene of F-box family protein  
At1g31080	chr1:011091832	0.0	W/11091832-11092899	AT1G31080.1  CDS  gene_syn F28K20.2, F28K20_2  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G31090.1); Has 649 Blast hits to 481 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 649; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31080.1p  transcript_id AT1G31080.1  protein_id AT1G31080.1p  transcript_id AT1G31080.1  
At1g31090	chr1:011094407	0.0	W/11094407-11094880,11095188-11095649	AT1G31090.1  CDS  gene_syn F28K20.3, F28K20_3  go_component cellular_component|GO:0005575||ND  product F-box family protein  note F-box family protein; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G31080.1); Has 541 Blast hits to 409 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 541; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31090.1p  transcript_id AT1G31090.1  protein_id AT1G31090.1p  transcript_id AT1G31090.1  
At1g31093	chr1:011096084	0.0	C/11096084-11096599	AT1G31093.1  pseudogenic_transcript  pseudo  function pseudogene of calcium-dependant protein kinase  
At1g31100	chr1:011097034	0.0	C/11097034-11100418	AT1G31100.1  mRNA_TE_gene  pseudo  gene_syn F28K20.4, F28K20_4  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 3.7e-35 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At1g31110	chr1:011104113	0.0	W/11104113-11104186	AT1G31110.1  tRNA  gene_syn 51082.TRNA-ILE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ile (anticodon: AAT)  transcript_id AT1G31110.1  
At1g31120	chr1:011107215	0.0	C/11107215-11107361,11106835-11107060,11106509-11106754,11106370-11106420,11106015-11106275,11105765-11105932,11104375-11105666	AT1G31120.1  CDS  gene_syn F28K20.5, F28K20_5, KUP10  gene KUP10  function potassium transporter  go_component membrane|GO:0016020||IEA  go_process potassium ion transport|GO:0006813||IEA  go_process potassium ion transport|GO:0006813||ISS  go_function potassium ion transmembrane transporter activity|GO:0015079||ISS  product KUP10; potassium ion transmembrane transporter  note KUP10; FUNCTIONS IN: potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport; LOCATED IN: membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Potassium uptake protein, kup (InterPro:IPR018519), K+ potassium transporter (InterPro:IPR003855); BEST Arabidopsis thaliana protein match is: KUP11; potassium ion transmembrane transporter (TAIR:AT2G35060.1); Has 2006 Blast hits to 1982 proteins in 587 species: Archae - 13; Bacteria - 1385; Metazoa - 0; Fungi - 57; Plants - 429; Viruses - 4; Other Eukaryotes - 118 (source: NCBI BLink).  protein_id AT1G31120.1p  transcript_id AT1G31120.1  protein_id AT1G31120.1p  transcript_id AT1G31120.1  
At1g31130	chr1:011114963	0.0	C/11114963-11115928	AT1G31130.1  CDS  gene_syn F28K20.6, F28K20_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44860.1); Has 131 Blast hits to 129 proteins in 19 species: Archae - 2; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G31130.1p  transcript_id AT1G31130.1  protein_id AT1G31130.1p  transcript_id AT1G31130.1  
At1g31140	chr1:011118031	0.0	W/11118031-11118218,11118782-11118854,11118971-11119138,11119223-11119285,11119524-11119673	AT1G31140.1  CDS  gene_syn AGAMOUS-LIKE 63, F28K20.7, F28K20_7, agl63  gene agl63  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product agl63 (AGAMOUS-LIKE 63); DNA binding / transcription factor  note AGAMOUS-LIKE 63 (agl63); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGL42 (AGAMOUS LIKE 42); transcription factor (TAIR:AT5G62165.3); Has 4557 Blast hits to 4557 proteins in 633 species: Archae - 0; Bacteria - 0; Metazoa - 551; Fungi - 201; Plants - 3754; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT1G31140.1p  transcript_id AT1G31140.1  protein_id AT1G31140.1p  transcript_id AT1G31140.1  
At1g31150	chr1:011120097	0.0	W/11120097-11121785,11121901-11122077,11122257-11122412	AT1G31150.1  CDS  gene_syn F28K20.8, F28K20_8  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700||IEA  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1985 (InterPro:IPR015410), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G36970.1); Has 238 Blast hits to 231 proteins in 35 species: Archae - 0; Bacteria - 1; Metazoa - 6; Fungi - 4; Plants - 217; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G31150.1p  transcript_id AT1G31150.1  protein_id AT1G31150.1p  transcript_id AT1G31150.1  
At1g31160	chr1:011124072	0.0	C/11124072-11124106,11123886-11123993,11123722-11123808,11123404-11123551,11123029-11123146,11122880-11122947	AT1G31160.1  CDS  gene_syn F28K20.9, F28K20_9  go_component chloroplast|GO:0009507|18431481|IDA  go_function catalytic activity|GO:0003824||IEA  go_process biological_process|GO:0008150||ND  go_function protein kinase C binding|GO:0005080||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc-binding protein, putative / protein kinase C inhibitor, putative  note zinc-binding protein, putative / protein kinase C inhibitor, putative; FUNCTIONS IN: protein kinase C binding, zinc ion binding, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histidine triad-like motif (InterPro:IPR011146), Histidine triad (HIT) protein (InterPro:IPR001310), Histidine triad motif (InterPro:IPR011151); BEST Arabidopsis thaliana protein match is: zinc-binding protein, putative / protein kinase C inhibitor, putative (TAIR:AT3G56490.1); Has 5594 Blast hits to 5592 proteins in 1456 species: Archae - 103; Bacteria - 2673; Metazoa - 341; Fungi - 103; Plants - 63; Viruses - 0; Other Eukaryotes - 2311 (source: NCBI BLink).  protein_id AT1G31160.1p  transcript_id AT1G31160.1  protein_id AT1G31160.1p  transcript_id AT1G31160.1  
At1g31163	chr1:011130090	0.0	C/11130090-11130239,11129606-11129825,11129311-11129516	AT1G31163.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: F-box associated type 3 (InterPro:IPR013187); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G30930.1); Has 54 Blast hits to 52 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31163.1p  transcript_id AT1G31163.1  protein_id AT1G31163.1p  transcript_id AT1G31163.1  
At1g31166	chr1:011130616	0.0	W/11130616-11130981	AT1G31166.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 1.7e-38 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At1g31170	chr1:011133521	0.0	W/11133521-11133590,11133683-11133840,11133927-11133960,11134032-11134125,11134213-11134228	AT1G31170.3  CDS  gene_syn ATSRX, F28K20.12, F28K20_12, SRX, SULFIREDOXIN  gene SRX  function encodes a cysteine-sulfinic acid reductase (sulfiredoxin - EC 1.8.98.2) capable of reducing overoxidized plastidic 2-Cys-Prx involved in peroxide detoxification and response to oxidative stress  go_component chloroplast|GO:0009507|17217469|IDA  go_process response to oxidative stress|GO:0006979|17217469|IDA  go_function DNA binding|GO:0003677||ISS  go_function oxidoreductase activity, acting on sulfur group of donors|GO:0016667|17217469|IDA  product SRX (SULFIREDOXIN); DNA binding / oxidoreductase, acting on sulfur group of donors  note SULFIREDOXIN (SRX); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, DNA binding; INVOLVED IN: response to oxidative stress; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sulfiredoxin (InterPro:IPR016692), ParB-like nuclease (InterPro:IPR003115); Has 163 Blast hits to 163 proteins in 63 species: Archae - 0; Bacteria - 39; Metazoa - 75; Fungi - 3; Plants - 20; Viruses - 2; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT1G31170.3p  transcript_id AT1G31170.3  protein_id AT1G31170.3p  transcript_id AT1G31170.3  
At1g31170	chr1:011133521	0.0	W/11133521-11133590,11133683-11133846,11133927-11133960,11134032-11134125,11134213-11134228	AT1G31170.1  CDS  gene_syn ATSRX, F28K20.12, F28K20_12, SRX, SULFIREDOXIN  gene SRX  function encodes a cysteine-sulfinic acid reductase (sulfiredoxin - EC 1.8.98.2) capable of reducing overoxidized plastidic 2-Cys-Prx involved in peroxide detoxification and response to oxidative stress  go_component chloroplast|GO:0009507|17217469|IDA  go_process response to oxidative stress|GO:0006979|17217469|IDA  go_function DNA binding|GO:0003677||ISS  go_function oxidoreductase activity, acting on sulfur group of donors|GO:0016667|17217469|IDA  product SRX (SULFIREDOXIN); DNA binding / oxidoreductase, acting on sulfur group of donors  note SULFIREDOXIN (SRX); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, DNA binding; INVOLVED IN: response to oxidative stress; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sulfiredoxin (InterPro:IPR016692), ParB-like nuclease (InterPro:IPR003115); Has 219 Blast hits to 219 proteins in 88 species: Archae - 0; Bacteria - 76; Metazoa - 75; Fungi - 13; Plants - 20; Viruses - 2; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT1G31170.1p  transcript_id AT1G31170.1  protein_id AT1G31170.1p  transcript_id AT1G31170.1  
At1g31170	chr1:011133521	0.0	W/11133521-11133590,11133683-11133846,11133927-11133960,11134032-11134125,11134213-11134228	AT1G31170.2  CDS  gene_syn ATSRX, F28K20.12, F28K20_12, SRX, SULFIREDOXIN  gene SRX  function encodes a cysteine-sulfinic acid reductase (sulfiredoxin - EC 1.8.98.2) capable of reducing overoxidized plastidic 2-Cys-Prx involved in peroxide detoxification and response to oxidative stress  go_component chloroplast|GO:0009507|17217469|IDA  go_process response to oxidative stress|GO:0006979|17217469|IDA  go_function DNA binding|GO:0003677||ISS  go_function oxidoreductase activity, acting on sulfur group of donors|GO:0016667|17217469|IDA  product SRX (SULFIREDOXIN); DNA binding / oxidoreductase, acting on sulfur group of donors  note SULFIREDOXIN (SRX); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, DNA binding; INVOLVED IN: response to oxidative stress; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sulfiredoxin (InterPro:IPR016692), ParB-like nuclease (InterPro:IPR003115); Has 219 Blast hits to 219 proteins in 88 species: Archae - 0; Bacteria - 76; Metazoa - 75; Fungi - 13; Plants - 20; Viruses - 2; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT1G31170.2p  transcript_id AT1G31170.2  protein_id AT1G31170.2p  transcript_id AT1G31170.2  
At1g31173	chr1:011137365	0.0	W/11137365-11138969	AT1G31173.1  miRNA  gene_syn MICRORNA167D, MIR167D  gene MIR167D  function Encodes a microRNA that targets ARF family members ARF6 and ARF8. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGAAGCUGCCAGCAUGAUCUGG  product MIR167D (MICRORNA167D); miRNA  transcript_id AT1G31173.1  
At1g31175	chr1:011140549	0.0	W/11140549-11140905	AT1G31175.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31175.1p  transcript_id AT1G31175.1  protein_id AT1G31175.1p  transcript_id AT1G31175.1  
At1g31180	chr1:011144268	0.0	C/11144268-11144617,11144087-11144198,11143851-11144015,11143690-11143776,11143494-11143610,11143290-11143397,11142999-11143205,11142843-11142911	AT1G31180.1  CDS  gene_syn F28K20.14, F28K20_14  function The AtIMD3 is one out of 3 genes encoding the enzyme 3-isopropylmalate dehydrogenase involved in leucine biosynthesis in Arabidopsis. Its subcellular location has been targeted to plastids.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component plastid|GO:0009536|15849421|ISS  go_process metabolic process|GO:0008152||ISS  go_process leucine biosynthetic process|GO:0009098|15849421|IGI  go_function 3-isopropylmalate dehydrogenase activity|GO:0003862|15849421|IGI  go_function 3-isopropylmalate dehydrogenase activity|GO:0003862||ISS  product 3-isopropylmalate dehydrogenase, chloroplast, putative  note 3-isopropylmalate dehydrogenase, chloroplast, putative; FUNCTIONS IN: 3-isopropylmalate dehydrogenase activity; INVOLVED IN: leucine biosynthetic process, response to salt stress, metabolic process; LOCATED IN: thylakoid, chloroplast, chloroplast stroma, plastid; EXPRESSED IN: fruit, root, leaf; CONTAINS InterPro DOMAIN/s: 3-isopropylmalate dehydrogenase (InterPro:IPR004429), Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804); BEST Arabidopsis thaliana protein match is: 3-isopropylmalate dehydrogenase, chloroplast, putative (TAIR:AT5G14200.1); Has 11249 Blast hits to 11249 proteins in 1564 species: Archae - 249; Bacteria - 4870; Metazoa - 487; Fungi - 587; Plants - 155; Viruses - 0; Other Eukaryotes - 4901 (source: NCBI BLink).  protein_id AT1G31180.1p  transcript_id AT1G31180.1  protein_id AT1G31180.1p  transcript_id AT1G31180.1  
At1g31190	chr1:011144861	0.0	W/11144861-11145160,11145344-11145411,11145522-11145655,11145754-11145842,11145943-11146000,11146066-11146118,11146211-11146423,11146510-11146611,11146702-11146800	AT1G31190.1  CDS  gene_syn F28K20.15, F28K20_15, IMPL1, MYO-INOSITOL MONOPHOSPHATASE LIKE 1  gene IMPL1  function Encodes a myo-inositol monophosphatase IMPL1 (myo-Inositol monophosphatase like 1).  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process sulfur metabolic process|GO:0006790||ISS  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437||ISS  go_function 3 (2 ),5 -bisphosphate nucleotidase activity|GO:0008441||ISS  go_function inositol-1(or 4)-monophosphatase activity|GO:0008934|19339506|IDA  product IMPL1 (MYO-INOSITOL MONOPHOSPHATASE LIKE 1); 3 (2 ),5 -bisphosphate nucleotidase/ inositol or phosphatidylinositol phosphatase/ inositol-1(or 4)-monophosphatase  note MYO-INOSITOL MONOPHOSPHATASE LIKE 1 (IMPL1); FUNCTIONS IN: 3 (2 ),5 -bisphosphate nucleotidase activity, inositol-1(or 4)-monophosphatase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: sulfur metabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inositol monophosphatase (InterPro:IPR000760); BEST Arabidopsis thaliana protein match is: VTC4; 3 (2 ),5 -bisphosphate nucleotidase/ L-galactose-1-phosphate phosphatase/ inositol or phosphatidylinositol phosphatase/ inositol-1(or 4)-monophosphatase (TAIR:AT3G02870.3); Has 10711 Blast hits to 10701 proteins in 1321 species: Archae - 150; Bacteria - 4541; Metazoa - 412; Fungi - 205; Plants - 175; Viruses - 0; Other Eukaryotes - 5228 (source: NCBI BLink).  protein_id AT1G31190.1p  transcript_id AT1G31190.1  protein_id AT1G31190.1p  transcript_id AT1G31190.1  
At1g31200	chr1:011147625	0.0	C/11147625-11147678,11147415-11147506,11146923-11147319	AT1G31200.1  CDS  gene_syn ATPP2-A9, F28K20.16, F28K20_16, Phloem protein 2-A9  gene ATPP2-A9  go_function carbohydrate binding|GO:0030246|12529520|ISS  product ATPP2-A9 (Phloem protein 2-A9); carbohydrate binding  note Phloem protein 2-A9 (ATPP2-A9); FUNCTIONS IN: carbohydrate binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: ATPP2-A10 (PHLOEM PROTEIN 2-A10) (TAIR:AT1G10155.1); Has 48 Blast hits to 48 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31200.1p  transcript_id AT1G31200.1  protein_id AT1G31200.1p  transcript_id AT1G31200.1  
At1g31210	chr1:011148254	0.0	C/11148254-11152501	AT1G31210.1  mRNA_TE_gene  pseudo  gene_syn F28K20.17, F28K20_17  note Transposable element gene, copia-like retrotransposon family, has a 2.3e-253 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element)  
At1g31220	chr1:011157064	0.0	W/11157064-11157409,11157584-11157698,11157805-11157981,11158081-11158207,11158295-11158408	AT1G31220.1  CDS  gene_syn F28K20.18, F28K20_18  function N10-formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase that catalyzes the conversion of phosphoribosyl glycineamide to phosphoribosyl N-formylglycineamide  go_component chloroplast|GO:0009507|18431481|IDA  go_process biosynthetic process|GO:0009058||ISS  go_process purine ribonucleotide biosynthetic process|GO:0009152|7920700|IGI  go_process purine ribonucleotide biosynthetic process|GO:0009152||ISS  go_function phosphoribosylglycinamide formyltransferase activity|GO:0004644|7920700|IGI  go_function formyltetrahydrofolate deformylase activity|GO:0008864||ISS  go_function hydroxymethyl-, formyl- and related transferase activity|GO:0016742||ISS  product phosphoribosylglycinamide formyltransferase  note phosphoribosylglycinamide formyltransferase; FUNCTIONS IN: phosphoribosylglycinamide formyltransferase activity, hydroxymethyl-, formyl- and related transferase activity, formyltetrahydrofolate deformylase activity; INVOLVED IN: purine ribonucleotide biosynthetic process, biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribosylglycinamide formyltransferase, active site (InterPro:IPR001555), Phosphoribosylglycinamide formyltransferase (InterPro:IPR004607), Formyl transferase, N-terminal (InterPro:IPR002376); BEST Arabidopsis thaliana protein match is: formyltetrahydrofolate deformylase/ hydroxymethyl-, formyl- and related transferase/ methyltransferase (TAIR:AT4G17360.1); Has 9092 Blast hits to 9092 proteins in 1463 species: Archae - 78; Bacteria - 5390; Metazoa - 288; Fungi - 133; Plants - 77; Viruses - 2; Other Eukaryotes - 3124 (source: NCBI BLink).  protein_id AT1G31220.1p  transcript_id AT1G31220.1  protein_id AT1G31220.1p  transcript_id AT1G31220.1  
At1g31230	chr1:011162860	0.0	C/11162860-11163055,11162402-11162776,11162198-11162286,11161790-11162093,11161622-11161674,11161324-11161532,11161157-11161244,11160955-11161068,11160731-11160829,11160414-11160608,11160246-11160328,11159940-11160165,11159661-11159806,11159421-11159556,11159253-11159336,11159086-11159178,11158744-11158989	AT1G31230.1  CDS  gene_syn AK-HSDH, AK-HSDH I, ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE, ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I, F28K20.19, F28K20_19  gene AK-HSDH I  function Encodes a bifunctional aspartate kinase/homoserine dehydrogenase. These two activities catalyze the first and the third steps toward the synthesis of the essential amino acids threonine, isoleucine and methionine.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process aspartate family amino acid biosynthetic process|GO:0009067|8204822|TAS  go_function aspartate kinase activity|GO:0004072|16216875|IDA  go_function homoserine dehydrogenase activity|GO:0004412|16216875|IDA  product AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I); aspartate kinase/ homoserine dehydrogenase  note ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I (AK-HSDH I); FUNCTIONS IN: homoserine dehydrogenase activity, aspartate kinase activity; INVOLVED IN: aspartate family amino acid biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aspartate/glutamate/uridylate kinase (InterPro:IPR001048), Homoserine dehydrogenase, catalytic (InterPro:IPR001342), Amino acid-binding ACT (InterPro:IPR002912), Aspartate/homoserine dehydrogenase, NAD-binding (InterPro:IPR005106), Aspartate kinase, conserved site (InterPro:IPR018042), Aspartate kinase region (InterPro:IPR001341), NAD(P)-binding (InterPro:IPR016040), Bifunctional aspartokinase/homoserine dehydrogenase I (InterPro:IPR011147); BEST Arabidopsis thaliana protein match is: bifunctional aspartate kinase/homoserine dehydrogenase, putative / AK-HSDH, putative (TAIR:AT4G19710.2); Has 11369 Blast hits to 11147 proteins in 1385 species: Archae - 266; Bacteria - 5873; Metazoa - 6; Fungi - 196; Plants - 159; Viruses - 0; Other Eukaryotes - 4869 (source: NCBI BLink).  protein_id AT1G31230.1p  transcript_id AT1G31230.1  protein_id AT1G31230.1p  transcript_id AT1G31230.1  
At1g31240	chr1:011164065	0.0	C/11164065-11164898	AT1G31240.1  CDS  gene_syn F28K20.20, F28K20_20  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072), Bromodomain transcription factor (InterPro:IPR006565); BEST Arabidopsis thaliana protein match is: TAF8 (TBP-ASSOCIATED FACTOR 8); DNA binding (TAIR:AT4G34340.1); Has 104 Blast hits to 104 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 56; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G31240.1p  transcript_id AT1G31240.1  protein_id AT1G31240.1p  transcript_id AT1G31240.1  
At1g31245	chr1:011165705	0.0	C/11165705-11165830	AT1G31245.1  pseudogenic_transcript  pseudo  function Encodes a defensin-like (DEFL) family protein.  
At1g31250	chr1:011167443	0.0	C/11167443-11167500,11166658-11167097	AT1G31250.1  CDS  gene_syn T19E23.3, T19E23_3  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product proline-rich family protein  note proline-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22485.1); Has 23079 Blast hits to 8163 proteins in 675 species: Archae - 67; Bacteria - 2586; Metazoa - 4792; Fungi - 1960; Plants - 4038; Viruses - 980; Other Eukaryotes - 8656 (source: NCBI BLink).  protein_id AT1G31250.1p  transcript_id AT1G31250.1  protein_id AT1G31250.1p  transcript_id AT1G31250.1  
At1g31258	chr1:011171225	0.0	W/11171225-11171835	AT1G31258.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G31258.1  
At1g31260	chr1:011176724	0.0	C/11176724-11177362,11176082-11176231,11175559-11175864	AT1G31260.1  CDS  gene_syn T19E23.6, T19E23_6, ZINC TRANSPORTER 10 PRECURSOR, ZIP10  gene ZIP10  function member of Fe(II) transporter isolog family  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|ISS  go_process cation transport|GO:0006812||ISS  go_function cation transmembrane transporter activity|GO:0008324|11500563|ISS  go_function cation transmembrane transporter activity|GO:0008324||ISS  go_function metal ion transmembrane transporter activity|GO:0046873||ISS  product ZIP10 (ZINC TRANSPORTER 10 PRECURSOR); cation transmembrane transporter/ metal ion transmembrane transporter  note ZINC TRANSPORTER 10 PRECURSOR (ZIP10); FUNCTIONS IN: cation transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: cation transport; LOCATED IN: endomembrane system, integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal and plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: IRT1 (iron-regulated transporter 1); cadmium ion transmembrane transporter/ copper uptake transmembrane transporter/ iron ion transmembrane transporter/ manganese ion transmembrane transporter/ zinc ion transmembrane transporter (TAIR:AT4G19690.2); Has 1230 Blast hits to 1137 proteins in 192 species: Archae - 0; Bacteria - 72; Metazoa - 306; Fungi - 396; Plants - 307; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT1G31260.1p  transcript_id AT1G31260.1  protein_id AT1G31260.1p  transcript_id AT1G31260.1  
At1g31270	chr1:011178349	0.0	W/11178349-11178429,11178467-11178658	AT1G31270.1  CDS  gene_syn T19E23.20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G31270.1p  transcript_id AT1G31270.1  protein_id AT1G31270.1p  transcript_id AT1G31270.1  
At1g31274	chr1:011179998	0.0	C/11179998-11180462	AT1G31274.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G26622; beta-galactosidase  
At1g31280	chr1:011181777	0.0	W/11181777-11182197,11182404-11183559,11183645-11185112	AT1G31280.1  CDS  gene_syn AGO2, T19E23.7, T19E23_7, argonaute 2  gene AGO2  function An Argonaute gene  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product AGO2 (argonaute 2); nucleic acid binding  note argonaute 2 (AGO2); FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Argonaute and Dicer protein, PAZ (InterPro:IPR003100), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: PAZ domain-containing protein / piwi domain-containing protein (TAIR:AT1G31290.1); Has 28109 Blast hits to 12738 proteins in 935 species: Archae - 11; Bacteria - 6700; Metazoa - 9915; Fungi - 2467; Plants - 4849; Viruses - 319; Other Eukaryotes - 3848 (source: NCBI BLink).  protein_id AT1G31280.1p  transcript_id AT1G31280.1  protein_id AT1G31280.1p  transcript_id AT1G31280.1  
At1g31290	chr1:011188293	0.0	W/11188293-11189241,11189603-11190752,11190832-11192317	AT1G31290.1  CDS  gene_syn T19E23.8, T19E23_8  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product PAZ domain-containing protein / piwi domain-containing protein  note PAZ domain-containing protein / piwi domain-containing protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Argonaute and Dicer protein, PAZ (InterPro:IPR003100), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: AGO2 (argonaute 2); nucleic acid binding (TAIR:AT1G31280.1); Has 78384 Blast hits to 27538 proteins in 1433 species: Archae - 100; Bacteria - 20452; Metazoa - 26641; Fungi - 5982; Plants - 9809; Viruses - 1132; Other Eukaryotes - 14268 (source: NCBI BLink).  protein_id AT1G31290.1p  transcript_id AT1G31290.1  protein_id AT1G31290.1p  transcript_id AT1G31290.1  
At1g31300	chr1:011194308	0.0	W/11194308-11194448,11194540-11194628,11194719-11194857,11194946-11195020,11195229-11195350,11195449-11195524,11195611-11195670,11195821-11195955	AT1G31300.1  CDS  gene_syn T19E23.9, T19E23_9  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19645.2); Has 478 Blast hits to 478 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 269; Fungi - 98; Plants - 80; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT1G31300.1p  transcript_id AT1G31300.1  protein_id AT1G31300.1p  transcript_id AT1G31300.1  
At1g31300	chr1:011194308	0.0	W/11194308-11194448,11194540-11194628,11194719-11194857,11194946-11195020,11195229-11195350,11195449-11195524,11195611-11195670,11195821-11195955	AT1G31300.2  CDS  gene_syn T19E23.9, T19E23_9  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19645.2); Has 478 Blast hits to 478 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 269; Fungi - 98; Plants - 80; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT1G31300.2p  transcript_id AT1G31300.2  protein_id AT1G31300.2p  transcript_id AT1G31300.2  
At1g31310	chr1:011199264	0.0	C/11199264-11200025,11198565-11198954	AT1G31310.1  CDS  gene_syn T19E23.10, T19E23_10  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT2G35640.1); Has 2614 Blast hits to 2265 proteins in 267 species: Archae - 8; Bacteria - 321; Metazoa - 1040; Fungi - 255; Plants - 532; Viruses - 119; Other Eukaryotes - 339 (source: NCBI BLink).  protein_id AT1G31310.1p  transcript_id AT1G31310.1  protein_id AT1G31310.1p  transcript_id AT1G31310.1  
At1g31319	chr1:011211807	0.0	C/11211807-11211914	AT1G31319.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G31319.1p  transcript_id AT1G31319.1  protein_id AT1G31319.1p  transcript_id AT1G31319.1  
At1g31320	chr1:011213107	0.0	W/11213107-11213283,11213691-11214032	AT1G31320.1  CDS  gene_syn LBD4, LOB DOMAIN-CONTAINING PROTEIN 4, T19E23.11, T19E23_11  gene LBD4  go_process biological_process|GO:0008150||ND  product LBD4 (LOB DOMAIN-CONTAINING PROTEIN 4)  note LOB DOMAIN-CONTAINING PROTEIN 4 (LBD4); INVOLVED IN: biological_process unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: ASL5; DNA binding / protein binding (TAIR:AT2G30130.1); Has 595 Blast hits to 592 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 595; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31320.1p  transcript_id AT1G31320.1  protein_id AT1G31320.1p  transcript_id AT1G31320.1  
At1g31330	chr1:011215584	0.0	C/11215584-11215939,11215011-11215320	AT1G31330.1  CDS  gene_syn PSAF, PSI-F, T19E23.12, T19E23_12, photosystem I subunit F  gene PSAF  function Encodes subunit F of photosystem I.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process photosynthesis|GO:0015979||IEA  go_component photosystem I reaction center|GO:0009538||ISS  go_component plastoglobule|GO:0010287|16414959|IDA  go_component plastoglobule|GO:0010287|16461379|IDA  go_process photosynthesis|GO:0015979||ISS  go_function molecular_function|GO:0003674||ND  product PSAF (photosystem I subunit F)  note photosystem I subunit F (PSAF); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre protein PsaF, subunit III (InterPro:IPR003666); Has 343 Blast hits to 343 proteins in 99 species: Archae - 0; Bacteria - 118; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 5; Other Eukaryotes - 157 (source: NCBI BLink).  protein_id AT1G31330.1p  transcript_id AT1G31330.1  protein_id AT1G31330.1p  transcript_id AT1G31330.1  
At1g31335	chr1:011217117	0.0	C/11217117-11217329	AT1G31335.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 21 Blast hits to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31335.1p  transcript_id AT1G31335.1  protein_id AT1G31335.1p  transcript_id AT1G31335.1  
At1g31340	chr1:011219325	0.0	C/11219325-11219417,11218661-11218920,11218076-11218193	AT1G31340.1  CDS  gene_syn ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, ATRUB1, NEDD8, RELATED TO UBIQUITIN 1, RUB1, T19E23.13, T19E23_13  gene RUB1  function Encodes a ubiquitin-related protein that is conjugated to target proteins by neddylation. It has been shown to be conjugated to the cullin AtCUL1. The RUB-conjugation pathway has been implicated in in auxin response.  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein modification process|GO:0006464||ISS  go_process response to auxin stimulus|GO:0009733|9624055|TAS  go_process protein neddylation|GO:0045116|10322542|TAS  go_function protein binding|GO:0005515|9624055|IDA  product RUB1 (RELATED TO UBIQUITIN 1); protein binding  note RELATED TO UBIQUITIN 1 (RUB1); FUNCTIONS IN: protein binding; INVOLVED IN: response to auxin stimulus, protein modification process, protein neddylation; LOCATED IN: plasma membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: UBQ7; protein binding (TAIR:AT2G35635.1); Has 12093 Blast hits to 5555 proteins in 611 species: Archae - 0; Bacteria - 13; Metazoa - 5835; Fungi - 1251; Plants - 2253; Viruses - 307; Other Eukaryotes - 2434 (source: NCBI BLink).  protein_id AT1G31340.1p  transcript_id AT1G31340.1  protein_id AT1G31340.1p  transcript_id AT1G31340.1  
At1g31350	chr1:011221519	0.0	C/11221519-11222706	AT1G31350.1  CDS  gene_syn T19E23.14, T19E23_14  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT1G55270.1); Has 400 Blast hits to 400 proteins in 48 species: Archae - 0; Bacteria - 19; Metazoa - 76; Fungi - 0; Plants - 302; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G31350.1p  transcript_id AT1G31350.1  protein_id AT1G31350.1p  transcript_id AT1G31350.1  
At1g31355	chr1:011228988	0.0	W/11228988-11229990	AT1G31355.1  pseudogenic_transcript  pseudo  gene_syn T19E23.15  note 60S ribosomal protein L21 (RPL21D), pseudogene, similar to 60s ribosomal protein L21 GB:Q43291 from (Arabidopsis thaliana); blastp match of 74% identity and 3.6e-50 P-value to GP|3885884|gb|AAC78102.1||AF093630 60S ribosomal protein L21 {Oryza sativa}  
At1g31358	chr1:011230463	0.0	C/11230463-11230612	AT1G31358.1  miRNA  gene_syn MICRORNA404, MIR404  gene MIR404  function Encodes a microRNA. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence:ATTAACGCTGGCGGTTGCGGCAGC  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR404 (MICRORNA404); miRNA  transcript_id AT1G31358.1  
At1g31360	chr1:011232422	0.0	W/11232422-11232485,11232756-11232979,11233087-11233233,11233361-11233576,11233732-11233836,11234096-11234200,11234292-11234414,11234542-11234630,11234788-11234824,11234914-11234947,11235182-11235234,11235309-11235386,11235483-11235548,11235787-11235853,11235947-11236000,11236211-11236318,11236406-11236470,11236645-11236723,11236927-11237129,11237212-11237412	AT1G31360.1  CDS  gene_syn ARABIDOPSIS RECQ HELICASE L2, ARABIDOPSIS THALIANA RECQ 2, ATRECQ2, RECQL2, T19E23.16, T19E23_16  gene RECQL2  function Encodes a (d)NTP-dependent 3 ->5  DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro.  go_component nucleus|GO:0005634|18419780|IC  go_process DNA repair|GO:0006281|18419780|IC  go_process DNA recombination|GO:0006310|18419780|IC  go_function protein binding|GO:0005515|11058127|IPI  go_function ATP-dependent helicase activity|GO:0008026||ISS  go_function four-way junction helicase activity|GO:0009378|18419780|IDA  go_function 3 -5  DNA helicase activity|GO:0043138|18419780|IDA  product RECQL2 (ARABIDOPSIS RECQ HELICASE L2); 3 -5  DNA helicase/ ATP-dependent helicase/ four-way junction helicase/ protein binding  note ARABIDOPSIS RECQ HELICASE L2 (RECQL2); FUNCTIONS IN: four-way junction helicase activity, protein binding, 3 -5  DNA helicase activity, ATP-dependent helicase activity; INVOLVED IN: DNA repair, DNA recombination; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal region (InterPro:IPR018329), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), Helicase and RNase D C-terminal, HRDC (InterPro:IPR002121); BEST Arabidopsis thaliana protein match is: RECQ4A; ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding (TAIR:AT1G10930.1); Has 20353 Blast hits to 20301 proteins in 1646 species: Archae - 332; Bacteria - 10503; Metazoa - 2819; Fungi - 1727; Plants - 916; Viruses - 14; Other Eukaryotes - 4042 (source: NCBI BLink).  protein_id AT1G31360.1p  transcript_id AT1G31360.1  protein_id AT1G31360.1p  transcript_id AT1G31360.1  
At1g31360	chr1:011233174	0.0	W/11233174-11233233,11233361-11233576,11233732-11233836,11234096-11234200,11234292-11234414,11234542-11234630,11234788-11234824,11234914-11234947,11235182-11235234,11235309-11235386,11235483-11235548,11235787-11235853,11235947-11236000,11236211-11236318,11236406-11236470,11236645-11236723,11236927-11237129,11237212-11237412	AT1G31360.2  CDS  gene_syn ARABIDOPSIS RECQ HELICASE L2, ARABIDOPSIS THALIANA RECQ 2, ATRECQ2, RECQL2, T19E23.16, T19E23_16  gene RECQL2  function Encodes a (d)NTP-dependent 3 ->5  DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro.  go_component nucleus|GO:0005634|18419780|IC  go_process DNA repair|GO:0006281|18419780|IC  go_process DNA recombination|GO:0006310|18419780|IC  go_function protein binding|GO:0005515|11058127|IPI  go_function ATP-dependent helicase activity|GO:0008026||ISS  go_function four-way junction helicase activity|GO:0009378|18419780|IDA  go_function 3 -5  DNA helicase activity|GO:0043138|18419780|IDA  product RECQL2 (ARABIDOPSIS RECQ HELICASE L2); 3 -5  DNA helicase/ ATP-dependent helicase/ four-way junction helicase/ protein binding  note ARABIDOPSIS RECQ HELICASE L2 (RECQL2); FUNCTIONS IN: four-way junction helicase activity, protein binding, 3 -5  DNA helicase activity, ATP-dependent helicase activity; INVOLVED IN: DNA repair, DNA recombination; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal region (InterPro:IPR018329), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), Helicase and RNase D C-terminal, HRDC (InterPro:IPR002121); BEST Arabidopsis thaliana protein match is: RECQ4A; ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding (TAIR:AT1G10930.1); Has 17363 Blast hits to 17320 proteins in 1598 species: Archae - 199; Bacteria - 9188; Metazoa - 2310; Fungi - 1308; Plants - 766; Viruses - 12; Other Eukaryotes - 3580 (source: NCBI BLink).  protein_id AT1G31360.2p  transcript_id AT1G31360.2  protein_id AT1G31360.2p  transcript_id AT1G31360.2  
At1g31370	chr1:011239205	0.0	C/11239205-11239363,11238658-11238861,11238298-11238516	AT1G31370.1  CDS  gene_syn T8E3.14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT1G31390.1); Has 112 Blast hits to 101 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 112; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31370.1p  transcript_id AT1G31370.1  protein_id AT1G31370.1p  transcript_id AT1G31370.1  
At1g31380	chr1:011240923	0.0	C/11240923-11241099,11240451-11240801	AT1G31380.1  CDS  gene_syn T8E3.3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT1G31390.1); Has 114 Blast hits to 103 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G31380.1p  transcript_id AT1G31380.1  protein_id AT1G31380.1p  transcript_id AT1G31380.1  
At1g31390	chr1:011244286	0.0	C/11244286-11244392,11244022-11244188,11243622-11243848,11243191-11243496	AT1G31390.1  CDS  gene_syn T8E3.4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT1G31400.1); Has 638 Blast hits to 574 proteins in 69 species: Archae - 0; Bacteria - 0; Metazoa - 215; Fungi - 6; Plants - 375; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT1G31390.1p  transcript_id AT1G31390.1  protein_id AT1G31390.1p  transcript_id AT1G31390.1  
At1g31400	chr1:011246375	0.0	C/11246375-11246481,11246110-11246276,11245708-11245925,11245225-11245569	AT1G31400.1  CDS  gene_syn T8E3.21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT1G31390.1); Has 294 Blast hits to 253 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 283; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G31400.1p  transcript_id AT1G31400.1  protein_id AT1G31400.1p  transcript_id AT1G31400.1  
At1g31410	chr1:011249084	0.0	C/11249084-11249345,11248864-11249003,11248520-11248768,11248222-11248356,11247951-11248133,11247654-11247815,11247094-11247537	AT1G31410.1  CDS  gene_syn T8E3.6, T8E3_6  go_component chloroplast|GO:0009507||IEA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||IEA  product putrescine-binding periplasmic protein-related  note putrescine-binding periplasmic protein-related; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial periplasmic spermidine/putrescine-binding protein (InterPro:IPR001188); Has 2713 Blast hits to 2713 proteins in 808 species: Archae - 5; Bacteria - 2447; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).  protein_id AT1G31410.1p  transcript_id AT1G31410.1  protein_id AT1G31410.1p  transcript_id AT1G31410.1  
At1g31420	chr1:011250360	0.0	W/11250360-11250459,11250550-11250685,11250761-11250832,11250910-11250981,11251081-11251152,11251447-11251518,11251602-11251673,11251901-11251989,11252083-11252241,11252348-11252680,11252756-11253004,11253081-11253214,11253298-11253516	AT1G31420.1  CDS  gene_syn FEI 1, FEI1, FEI2, T8E3.2, T8E3_2  gene FEI1  function Encodes a plasma membrane localized leucine-rich repeat receptor kinase that is involved in cell wall elongation. Loss of function mutations of FEI1 and FEI2 exhibit defects in root and hypocotyl cell elongation. Double mutants are defective in cell wall biosynthesis and have thick hypocotyls, and short, thick roots.  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_process plant-type cell wall organization|GO:0009664|19017745|IMP  go_process unidimensional cell growth|GO:0009826|19017745|IMP  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301|19017745|IMP  product FEI1 (FEI 1); ATP binding / kinase/ protein serine/threonine kinase  note FEI 1 (FEI1); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation, plant-type cell wall organization, unidimensional cell growth; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: FEI2 (FEI 2); kinase (TAIR:AT2G35620.1); Has 119347 Blast hits to 91505 proteins in 3176 species: Archae - 82; Bacteria - 9193; Metazoa - 39672; Fungi - 6826; Plants - 46047; Viruses - 434; Other Eukaryotes - 17093 (source: NCBI BLink).  protein_id AT1G31420.1p  transcript_id AT1G31420.1  protein_id AT1G31420.1p  transcript_id AT1G31420.1  
At1g31430	chr1:011254025	0.0	C/11254025-11255737	AT1G31430.1  CDS  gene_syn T8E3.8, T8E3_8  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; EXPRESSED IN: shoot apex, sepal, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22410.1); Has 15300 Blast hits to 5108 proteins in 145 species: Archae - 0; Bacteria - 2; Metazoa - 52; Fungi - 42; Plants - 14949; Viruses - 0; Other Eukaryotes - 255 (source: NCBI BLink).  protein_id AT1G31430.1p  transcript_id AT1G31430.1  protein_id AT1G31430.1p  transcript_id AT1G31430.1  
At1g31440	chr1:011258420	0.0	C/11258420-11258479,11257972-11258085,11257817-11257886,11257595-11257743,11257391-11257492,11257109-11257309,11256973-11257035,11256532-11256888,11256370-11256444,11256150-11256278	AT1G31440.1  CDS  gene_syn T8E3.10, T8E3_10  go_component plasma membrane|GO:0005886|17317660|IDA  go_component endomembrane system|GO:0012505|11701884|IDA  go_function clathrin binding|GO:0030276|11701884|IDA  product SH3 domain-containing protein 1 (SH3P1)  note SH3 domain-containing protein 1 (SH3P1); FUNCTIONS IN: clathrin binding; LOCATED IN: endomembrane system, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Src homology-3 domain (InterPro:IPR001452); BEST Arabidopsis thaliana protein match is: SH3 domain-containing protein 2 (SH3P2) (TAIR:AT4G34660.1); Has 2770 Blast hits to 2406 proteins in 226 species: Archae - 6; Bacteria - 195; Metazoa - 1545; Fungi - 132; Plants - 160; Viruses - 11; Other Eukaryotes - 721 (source: NCBI BLink).  protein_id AT1G31440.1p  transcript_id AT1G31440.1  protein_id AT1G31440.1p  transcript_id AT1G31440.1  
At1g31450	chr1:011259872	0.0	C/11259872-11261209	AT1G31450.1  CDS  gene_syn T8E3.12, T8E3_12  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: embryo; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT2G35615.1); Has 2212 Blast hits to 2197 proteins in 245 species: Archae - 0; Bacteria - 2; Metazoa - 535; Fungi - 379; Plants - 1156; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink).  protein_id AT1G31450.1p  transcript_id AT1G31450.1  protein_id AT1G31450.1p  transcript_id AT1G31450.1  
At1g31460	chr1:011261705	0.0	C/11261705-11262610	AT1G31460.1  CDS  gene_syn T8E3.13, T8E3_13  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23270.1); Has 1177 Blast hits to 701 proteins in 148 species: Archae - 0; Bacteria - 210; Metazoa - 433; Fungi - 158; Plants - 37; Viruses - 17; Other Eukaryotes - 322 (source: NCBI BLink).  protein_id AT1G31460.1p  transcript_id AT1G31460.1  protein_id AT1G31460.1p  transcript_id AT1G31460.1  
At1g31470	chr1:011264528	0.0	C/11264528-11264944,11263514-11264349,11262937-11263432	AT1G31470.1  CDS  gene_syn NFD4, NUCLEAR FUSION DEFECTIVE 4, T8E3.15, T8E3_15  gene NFD4  go_component mitochondrion|GO:0005739|16698901|RCA  go_process response to salt stress|GO:0009651|17411438|IMP  product NFD4 (NUCLEAR FUSION DEFECTIVE 4)  note NUCLEAR FUSION DEFECTIVE 4 (NFD4); INVOLVED IN: response to salt stress; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45275.1); Has 739 Blast hits to 706 proteins in 201 species: Archae - 15; Bacteria - 203; Metazoa - 7; Fungi - 137; Plants - 313; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT1G31470.1p  transcript_id AT1G31470.1  protein_id AT1G31470.1p  transcript_id AT1G31470.1  
At1g31480	chr1:011266225	0.0	W/11266225-11266432,11266552-11266652,11266792-11266974,11267093-11267248,11267455-11267526,11267616-11267768,11267924-11267974,11268101-11268271,11268366-11268515,11268707-11268772,11268866-11269387,11269590-11269653,11269760-11269878,11269970-11270042,11270201-11270303,11270412-11270505,11270582-11270644,11270755-11270803,11270886-11270989,11271149-11271195,11271275-11271527	AT1G31480.1  CDS  gene_syn SGR2, SHOOT GRAVITROPISM 2, T8E3.1, T8E3_1  gene SGR2  function encodes a novel protein that may be part of a gene family represented by bovine phosphatidic acid-preferring phospholipase A1 (PA-PLA1)containing a putative transmembrane domain. SGR2 is involved in the formation and function of the vacuole.  go_component vacuole|GO:0005773|14760709|IDA  go_component plant-type vacuole membrane|GO:0009705|11826298|IDA  go_process detection of gravity|GO:0009590|16344262|IMP  go_process gravitropism|GO:0009630|11826297|IMP  go_process amyloplast organization|GO:0009660|11826298|IMP  go_process negative gravitropism|GO:0009959|11826297|IMP  go_function phospholipase A1 activity|GO:0008970|11826298|ISS  product SGR2 (SHOOT GRAVITROPISM 2); phospholipase A1  note SHOOT GRAVITROPISM 2 (SGR2); FUNCTIONS IN: phospholipase A1 activity; INVOLVED IN: gravitropism, negative gravitropism, detection of gravity, amyloplast organization; LOCATED IN: plant-type vacuole membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DDHD (InterPro:IPR004177); Has 902 Blast hits to 585 proteins in 130 species: Archae - 0; Bacteria - 1; Metazoa - 543; Fungi - 252; Plants - 22; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT1G31480.1p  transcript_id AT1G31480.1  protein_id AT1G31480.1p  transcript_id AT1G31480.1  
At1g31485	chr1:011271744	0.0	W/11271744-11273075	AT1G31485.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G31490  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G31485.1  
At1g31490	chr1:011271744	0.0	C/11271744-11273078	AT1G31490.1  CDS  gene_syn F27M3.28, F27M3_28  go_component chloroplast|GO:0009507|15028209|IDA  go_process cellular amine metabolic process|GO:0009308||IEA  go_function copper ion binding|GO:0005507||IEA  go_function amine oxidase activity|GO:0008131||IEA  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_function quinone binding|GO:0048038||IEA  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, quinone binding, amine oxidase activity, copper ion binding, transferase activity; INVOLVED IN: cellular amine metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal region (InterPro:IPR016182), Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT1G78990.1); Has 1188 Blast hits to 1186 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 32; Plants - 1156; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31490.1p  transcript_id AT1G31490.1  protein_id AT1G31490.1p  transcript_id AT1G31490.1  
At1g31500	chr1:011276060	0.0	C/11276060-11276147,11275917-11275957,11275680-11275729,11275282-11275351,11274941-11275065,11274741-11274853,11274461-11274596,11274236-11274383,11273821-11274126	AT1G31500.2  CDS  gene_syn F27M3.27, F27M3_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product endonuclease/exonuclease/phosphatase family protein  note endonuclease/exonuclease/phosphatase family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein (TAIR:AT1G31530.1); Has 896 Blast hits to 882 proteins in 149 species: Archae - 0; Bacteria - 8; Metazoa - 439; Fungi - 175; Plants - 131; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).  protein_id AT1G31500.2p  transcript_id AT1G31500.2  protein_id AT1G31500.2p  transcript_id AT1G31500.2  
At1g31500	chr1:011276479	0.0	C/11276479-11276534,11275917-11276166,11275680-11275729,11275282-11275351,11274941-11275065,11274741-11274853,11274461-11274596,11274236-11274383,11273821-11274126	AT1G31500.4  CDS  gene_syn F27M3.27, F27M3_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product endonuclease/exonuclease/phosphatase family protein  note endonuclease/exonuclease/phosphatase family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein (TAIR:AT1G31530.1); Has 896 Blast hits to 882 proteins in 149 species: Archae - 0; Bacteria - 8; Metazoa - 439; Fungi - 175; Plants - 131; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).  protein_id AT1G31500.4p  transcript_id AT1G31500.4  protein_id AT1G31500.4p  transcript_id AT1G31500.4  
At1g31500	chr1:011276479	0.0	C/11276479-11276534,11276060-11276166,11275917-11275957,11275680-11275729,11275282-11275351,11274941-11275065,11274741-11274853,11274461-11274596,11274230-11274383	AT1G31500.3  CDS  gene_syn F27M3.27, F27M3_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product endonuclease/exonuclease/phosphatase family protein  note endonuclease/exonuclease/phosphatase family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein (TAIR:AT1G31530.1); Has 854 Blast hits to 849 proteins in 147 species: Archae - 0; Bacteria - 4; Metazoa - 431; Fungi - 171; Plants - 124; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).  protein_id AT1G31500.3p  transcript_id AT1G31500.3  protein_id AT1G31500.3p  transcript_id AT1G31500.3  
At1g31500	chr1:011276479	0.0	C/11276479-11276534,11276060-11276181,11275917-11275957,11275680-11275729,11275282-11275351,11274941-11275065,11274741-11274853,11274461-11274596,11274236-11274383,11273821-11274126	AT1G31500.1  CDS  gene_syn F27M3.27, F27M3_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product endonuclease/exonuclease/phosphatase family protein  note endonuclease/exonuclease/phosphatase family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein (TAIR:AT1G31530.1); Has 896 Blast hits to 882 proteins in 149 species: Archae - 0; Bacteria - 8; Metazoa - 439; Fungi - 175; Plants - 131; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).  protein_id AT1G31500.1p  transcript_id AT1G31500.1  protein_id AT1G31500.1p  transcript_id AT1G31500.1  
At1g31510	chr1:011277417	0.0	W/11277417-11278104,11278149-11278208,11278281-11278462	AT1G31510.1  CDS  gene_syn F27M3.26, F27M3_26  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G11620.1); Has 393 Blast hits to 391 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 393; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31510.1p  transcript_id AT1G31510.1  protein_id AT1G31510.1p  transcript_id AT1G31510.1  
At1g31520	chr1:011279581	0.0	C/11279581-11279639,11279346-11279438,11278983-11279229	AT1G31520.1  CDS  gene_syn F27M3.25, F27M3_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31520.1p  transcript_id AT1G31520.1  protein_id AT1G31520.1p  transcript_id AT1G31520.1  
At1g31530	chr1:011282422	0.0	C/11282422-11282468,11282311-11282380,11282099-11282214,11281781-11281987,11281532-11281676,11281188-11281454	AT1G31530.1  CDS  gene_syn F27M3.24, F27M3_24  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity|GO:0016787||ISS  product endonuclease/exonuclease/phosphatase family protein  note endonuclease/exonuclease/phosphatase family protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein (TAIR:AT1G31500.4); Has 713 Blast hits to 711 proteins in 134 species: Archae - 0; Bacteria - 0; Metazoa - 399; Fungi - 137; Plants - 99; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT1G31530.1p  transcript_id AT1G31530.1  protein_id AT1G31530.1p  transcript_id AT1G31530.1  
At1g31540	chr1:011293237	0.0	C/11293237-11293697,11292041-11293157,11291617-11291913,11291051-11291506	AT1G31540.1  CDS  gene_syn T8E3.20, T8E3_20  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor (TAIR:AT5G46270.1); Has 11218 Blast hits to 8480 proteins in 336 species: Archae - 10; Bacteria - 305; Metazoa - 510; Fungi - 24; Plants - 10109; Viruses - 12; Other Eukaryotes - 248 (source: NCBI BLink).  protein_id AT1G31540.1p  transcript_id AT1G31540.1  protein_id AT1G31540.1p  transcript_id AT1G31540.1  
At1g31540	chr1:011293237	0.0	C/11293237-11293697,11292041-11293157,11291617-11291913,11291096-11291506,11289346-11290527,11289244-11289261	AT1G31540.2  CDS  gene_syn T8E3.20, T8E3_20  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat 3 (InterPro:IPR011713), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G46260.1); Has 13306 Blast hits to 9332 proteins in 389 species: Archae - 14; Bacteria - 484; Metazoa - 987; Fungi - 57; Plants - 11164; Viruses - 17; Other Eukaryotes - 583 (source: NCBI BLink).  protein_id AT1G31540.2p  transcript_id AT1G31540.2  protein_id AT1G31540.2p  transcript_id AT1G31540.2  
At1g31550	chr1:011297017	0.0	C/11297017-11297284,11296596-11296808,11296361-11296509,11295991-11296267,11295635-11295912	AT1G31550.2  CDS  gene_syn T8E3.19, T8E3_19  go_component vacuole|GO:0005773|15539469|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298||ISS  product GDSL-motif lipase, putative  note GDSL-motif lipase, putative; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: lipase, putative (TAIR:AT1G28600.1); Has 1801 Blast hits to 1768 proteins in 140 species: Archae - 0; Bacteria - 216; Metazoa - 1; Fungi - 2; Plants - 1579; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G31550.2p  transcript_id AT1G31550.2  protein_id AT1G31550.2p  transcript_id AT1G31550.2  
At1g31550	chr1:011297017	0.0	C/11297017-11297284,11296596-11296808,11296361-11296509,11296000-11296267,11295635-11295912	AT1G31550.1  CDS  gene_syn T8E3.19, T8E3_19  go_component vacuole|GO:0005773|15539469|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298||ISS  product GDSL-motif lipase, putative  note GDSL-motif lipase, putative; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: lipase, putative (TAIR:AT1G28600.1); Has 1660 Blast hits to 1632 proteins in 107 species: Archae - 0; Bacteria - 124; Metazoa - 1; Fungi - 2; Plants - 1531; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G31550.1p  transcript_id AT1G31550.1  protein_id AT1G31550.1p  transcript_id AT1G31550.1  
At1g31570	chr1:011302782	0.0	C/11302782-11309164	AT1G31570.1  mRNA_TE_gene  pseudo  gene_syn T8E3.18  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 0. P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At1g31580	chr1:011311300	0.0	W/11311300-11311405,11311531-11311712	AT1G31580.1  CDS  gene_syn CXC750, ECS1, F27M3.20, F27M3_20  gene ECS1  function Encodes cell wall protein. ECS1 is not a Xcc750 resistance gene, but the genetic data indicate that ECS1 is linked to a locus influencing resistance to Xcc750.  go_component cell wall|GO:0005618|9869403|IDA  go_process defense response|GO:0006952|8018872|IEP  go_function molecular_function|GO:0003674||ND  product ECS1  note ECS1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 12 Blast hits to 12 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31580.1p  transcript_id AT1G31580.1  protein_id AT1G31580.1p  transcript_id AT1G31580.1  
At1g31600	chr1:011314624	0.0	C/11314624-11314944,11314342-11314437,11314034-11314249,11313672-11313944,11313509-11313574,11313376-11313438	AT1G31600.2  CDS  gene_syn AT1G31610, F27M3.19, F27M3_19  go_function nucleic acid binding|GO:0003676||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123), RNA recognition motif, RNP-1 (InterPro:IPR000504); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G02485.1); Has 463 Blast hits to 463 proteins in 127 species: Archae - 0; Bacteria - 53; Metazoa - 223; Fungi - 51; Plants - 56; Viruses - 3; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT1G31600.2p  transcript_id AT1G31600.2  protein_id AT1G31600.2p  transcript_id AT1G31600.2  
At1g31600	chr1:011314624	0.0	C/11314624-11315199,11314342-11314443,11314034-11314249,11313672-11313944,11313509-11313574,11313376-11313438	AT1G31600.1  CDS  gene_syn AT1G31610, F27M3.19, F27M3_19  go_function nucleic acid binding|GO:0003676||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123), RNA recognition motif, RNP-1 (InterPro:IPR000504); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G02485.1); Has 480 Blast hits to 480 proteins in 127 species: Archae - 0; Bacteria - 53; Metazoa - 222; Fungi - 51; Plants - 74; Viruses - 3; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT1G31600.1p  transcript_id AT1G31600.1  protein_id AT1G31600.1p  transcript_id AT1G31600.1  
At1g31600	chr1:011314624	0.0	C/11314624-11315199,11314342-11314443,11314034-11314249,11313672-11313944,11313509-11313574,11313376-11313438	AT1G31600.3  CDS  gene_syn AT1G31610, F27M3.19, F27M3_19  go_function nucleic acid binding|GO:0003676||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123), RNA recognition motif, RNP-1 (InterPro:IPR000504); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G02485.1); Has 480 Blast hits to 480 proteins in 127 species: Archae - 0; Bacteria - 53; Metazoa - 222; Fungi - 51; Plants - 74; Viruses - 3; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT1G31600.3p  transcript_id AT1G31600.3  protein_id AT1G31600.3p  transcript_id AT1G31600.3  
At1g31620	chr1:011316941	0.0	W/11316941-11317007,11317169-11317262,11317456-11317552,11317817-11317894	AT1G31620.1  CDS  gene_syn F27M3.18, F27M3_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31620.1p  transcript_id AT1G31620.1  protein_id AT1G31620.1p  transcript_id AT1G31620.1  
At1g31630	chr1:011318528	0.0	C/11318528-11319547	AT1G31630.1  CDS  gene_syn AGAMOUS-LIKE 86, AGL86, F27M3.17, F27M3_17  gene AGL86  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product AGL86 (AGAMOUS-LIKE 86); DNA binding / transcription factor  note AGAMOUS-LIKE 86 (AGL86); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL92 (AGAMOUS-LIKE 92); DNA binding / transcription factor (TAIR:AT1G31640.1); Has 2897 Blast hits to 2601 proteins in 360 species: Archae - 0; Bacteria - 44; Metazoa - 497; Fungi - 46; Plants - 2146; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).  protein_id AT1G31630.1p  transcript_id AT1G31630.1  protein_id AT1G31630.1p  transcript_id AT1G31630.1  
At1g31640	chr1:011322919	0.0	C/11322919-11324176,11322692-11322828	AT1G31640.1  CDS  gene_syn AGAMOUS-LIKE 92, AGL92, F27M3.16, F27M3_16  gene AGL92  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product AGL92 (AGAMOUS-LIKE 92); DNA binding / transcription factor  note AGAMOUS-LIKE 92 (AGL92); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL86 (AGAMOUS-LIKE 86); DNA binding / transcription factor (TAIR:AT1G31630.1); Has 1811 Blast hits to 1790 proteins in 259 species: Archae - 0; Bacteria - 2; Metazoa - 397; Fungi - 17; Plants - 1252; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).  protein_id AT1G31640.1p  transcript_id AT1G31640.1  protein_id AT1G31640.1p  transcript_id AT1G31640.1  
At1g31650	chr1:011329686	0.0	C/11329686-11329767,11328093-11328533,11327835-11327989,11327686-11327760,11327330-11327599,11326903-11327253,11326474-11326830	AT1G31650.1  CDS  gene_syn ATROPGEF14, F27M3.15, F27M3_15, ROPGEF14  gene ROPGEF14  function Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.  go_process biological_process|GO:0008150||ND  go_function Rho guanyl-nucleotide exchange factor activity|GO:0005089|15980860|ISS  product ROPGEF14; Rho guanyl-nucleotide exchange factor  note ROPGEF14; FUNCTIONS IN: Rho guanyl-nucleotide exchange factor activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: ROPGEF7; Rho guanyl-nucleotide exchange factor (TAIR:AT5G02010.1); Has 167 Blast hits to 167 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31650.1p  transcript_id AT1G31650.1  protein_id AT1G31650.1p  transcript_id AT1G31650.1  
At1g31660	chr1:011333324	0.0	C/11333324-11333440,11333027-11333248,11332779-11332905,11332648-11332699,11332245-11332572,11332075-11332154,11331936-11331983,11331676-11331822,11331510-11331582,11331348-11331423,11331176-11331240	AT1G31660.1  CDS  gene_syn F27M3.14, F27M3_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bystin (InterPro:IPR007955); Has 370 Blast hits to 362 proteins in 156 species: Archae - 0; Bacteria - 7; Metazoa - 139; Fungi - 93; Plants - 32; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).  protein_id AT1G31660.1p  transcript_id AT1G31660.1  protein_id AT1G31660.1p  transcript_id AT1G31660.1  
At1g31670	chr1:011337558	0.0	W/11337558-11337825,11338816-11339564,11339727-11340116,11340228-11340332,11340751-11341000,11341043-11341298,11341682-11341889	AT1G31670.1  CDS  gene_syn F27M3.13, F27M3_13  go_component endomembrane system|GO:0012505||IEA  go_process cellular amine metabolic process|GO:0009308||IEA  go_function copper ion binding|GO:0005507||IEA  go_function amine oxidase activity|GO:0008131||IEA  go_function quinone binding|GO:0048038||IEA  go_function copper ion binding|GO:0005507||ISS  product copper amine oxidase, putative  note copper amine oxidase, putative; FUNCTIONS IN: quinone binding, amine oxidase activity, copper ion binding; INVOLVED IN: cellular amine metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal region (InterPro:IPR016182), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: amine oxidase/ copper ion binding / quinone binding (TAIR:AT1G31690.1); Has 1082 Blast hits to 1079 proteins in 164 species: Archae - 4; Bacteria - 240; Metazoa - 217; Fungi - 287; Plants - 137; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink).  protein_id AT1G31670.1p  transcript_id AT1G31670.1  protein_id AT1G31670.1p  transcript_id AT1G31670.1  
At1g31690	chr1:011343980	0.0	W/11343980-11344761,11345408-11345792,11345942-11346055,11346464-11347008,11347560-11347767	AT1G31690.1  CDS  gene_syn F27M3.11, F27M3_11  go_component endomembrane system|GO:0012505||IEA  go_process cellular amine metabolic process|GO:0009308||IEA  go_function copper ion binding|GO:0005507||IEA  go_function amine oxidase activity|GO:0008131||IEA  go_function quinone binding|GO:0048038||IEA  go_function copper ion binding|GO:0005507||ISS  product amine oxidase/ copper ion binding / quinone binding  note amine oxidase/ copper ion binding / quinone binding; FUNCTIONS IN: quinone binding, amine oxidase activity, copper ion binding; INVOLVED IN: cellular amine metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal region (InterPro:IPR016182), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: copper amine oxidase, putative (TAIR:AT1G31710.1); Has 1097 Blast hits to 1095 proteins in 164 species: Archae - 4; Bacteria - 242; Metazoa - 220; Fungi - 296; Plants - 135; Viruses - 0; Other Eukaryotes - 200 (source: NCBI BLink).  protein_id AT1G31690.1p  transcript_id AT1G31690.1  protein_id AT1G31690.1p  transcript_id AT1G31690.1  
At1g31710	chr1:011349855	0.0	W/11349855-11350645,11353283-11353667,11353760-11353873,11354463-11355010,11355132-11355339	AT1G31710.1  CDS  gene_syn F27M3.9, F27M3_9  go_component endomembrane system|GO:0012505||IEA  go_process cellular amine metabolic process|GO:0009308||IEA  go_function copper ion binding|GO:0005507||IEA  go_function amine oxidase activity|GO:0008131||IEA  go_function quinone binding|GO:0048038||IEA  go_function copper ion binding|GO:0005507||ISS  product copper amine oxidase, putative  note copper amine oxidase, putative; FUNCTIONS IN: amine oxidase activity, quinone binding, copper ion binding; INVOLVED IN: cellular amine metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal region (InterPro:IPR016182), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: amine oxidase/ copper ion binding / quinone binding (TAIR:AT1G31690.1); Has 1084 Blast hits to 1082 proteins in 163 species: Archae - 4; Bacteria - 240; Metazoa - 219; Fungi - 285; Plants - 136; Viruses - 0; Other Eukaryotes - 200 (source: NCBI BLink).  protein_id AT1G31710.1p  transcript_id AT1G31710.1  protein_id AT1G31710.1p  transcript_id AT1G31710.1  
At1g31720	chr1:011356169	0.0	W/11356169-11356294,11356372-11356592,11356723-11356960	AT1G31720.1  CDS  gene_syn F27M3.8, F27M3_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, inflorescence meristem, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19370.1); Has 80 Blast hits to 80 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31720.1p  transcript_id AT1G31720.1  protein_id AT1G31720.1p  transcript_id AT1G31720.1  
At1g31730	chr1:011359907	0.0	W/11359907-11360695,11360777-11360992,11361075-11361185,11361284-11361481,11361574-11361705,11361941-11361997,11362081-11362197,11362567-11362644,11362727-11362870,11362942-11363916	AT1G31730.1  CDS  gene_syn F27M3.7, F27M3_7  go_component membrane coat|GO:0030117||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function clathrin binding|GO:0030276||ISS  product epsilon-adaptin, putative  note epsilon-adaptin, putative; FUNCTIONS IN: protein binding, clathrin binding, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Adaptor protein complex AP-4, epsilon subunit (InterPro:IPR017109), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1); binding / clathrin binding / protein binding / protein transporter (TAIR:AT1G23900.2); Has 4111 Blast hits to 2632 proteins in 228 species: Archae - 0; Bacteria - 67; Metazoa - 1478; Fungi - 596; Plants - 220; Viruses - 3; Other Eukaryotes - 1747 (source: NCBI BLink).  protein_id AT1G31730.1p  transcript_id AT1G31730.1  protein_id AT1G31730.1p  transcript_id AT1G31730.1  
At1g31740	chr1:011369687	0.0	C/11369687-11369908,11369377-11369585,11368563-11368629,11368385-11368477,11368079-11368222,11367902-11367990,11367635-11367740,11367454-11367541,11367251-11367369,11367003-11367164,11366595-11366895,11366399-11366508,11366140-11366320,11365889-11366005,11365285-11365637	AT1G31740.1  CDS  gene_syn BGAL15, beta-galactosidase 15  gene BGAL15  function Encodes a putative &beta;-galactosidase.  go_component beta-galactosidase complex|GO:0009341||IEA  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function beta-galactosidase activity|GO:0004565|15517348|TAS  go_function beta-galactosidase activity|GO:0004565||ISS  product BGAL15 (beta-galactosidase 15); beta-galactosidase  note beta-galactosidase 15 (BGAL15); FUNCTIONS IN: beta-galactosidase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system, beta-galactosidase complex; EXPRESSED IN: 7 plant structures; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Galactose-binding like (InterPro:IPR008979), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGAL7 (beta-galactosidase 7); beta-galactosidase (TAIR:AT5G20710.1); Has 1221 Blast hits to 1181 proteins in 250 species: Archae - 11; Bacteria - 332; Metazoa - 320; Fungi - 120; Plants - 379; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT1G31740.1p  transcript_id AT1G31740.1  protein_id AT1G31740.1p  transcript_id AT1G31740.1  
At1g31750	chr1:011371791	0.0	C/11371791-11372031,11370809-11371098	AT1G31750.1  CDS  gene_syn F5M6.24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product proline-rich family protein  note proline-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; Has 28504 Blast hits to 13839 proteins in 758 species: Archae - 8; Bacteria - 3021; Metazoa - 12889; Fungi - 3156; Plants - 5337; Viruses - 840; Other Eukaryotes - 3253 (source: NCBI BLink).  protein_id AT1G31750.1p  transcript_id AT1G31750.1  protein_id AT1G31750.1p  transcript_id AT1G31750.1  
At1g31760	chr1:011373202	0.0	C/11373202-11373414,11372602-11372727	AT1G31760.1  CDS  gene_syn F5M6.23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SWIB complex BAF60b domain-containing protein  note SWIB complex BAF60b domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 (InterPro:IPR003121); BEST Arabidopsis thaliana protein match is: SWIB complex BAF60b domain-containing protein (TAIR:AT2G35605.1); Has 610 Blast hits to 576 proteins in 146 species: Archae - 0; Bacteria - 132; Metazoa - 43; Fungi - 118; Plants - 189; Viruses - 6; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT1G31760.1p  transcript_id AT1G31760.1  protein_id AT1G31760.1p  transcript_id AT1G31760.1  
At1g31770	chr1:011377483	0.0	C/11377483-11377644,11376519-11377308,11376279-11376434,11375996-11376183,11375252-11375902	AT1G31770.1  CDS  gene_syn F5M6.22  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ABC transporter family protein  note ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 (InterPro:IPR000412), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT4G27420.1); Has 231605 Blast hits to 212262 proteins in 2642 species: Archae - 4250; Bacteria - 159285; Metazoa - 7487; Fungi - 4430; Plants - 2737; Viruses - 7; Other Eukaryotes - 53409 (source: NCBI BLink).  protein_id AT1G31770.1p  transcript_id AT1G31770.1  protein_id AT1G31770.1p  transcript_id AT1G31770.1  
At1g31772	chr1:011378940	0.0	W/11378940-11378999,11379172-11379414	AT1G31772.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G31772.1p  transcript_id AT1G31772.1  protein_id AT1G31772.1p  transcript_id AT1G31772.1  
At1g31780	chr1:011391341	0.0	W/11391341-11391763,11391846-11391953,11392058-11392125,11392554-11392677,11392785-11392931,11393139-11393393,11393502-11393786,11393879-11394013,11394113-11394610	AT1G31780.1  CDS  gene_syn F5M6.21, F5M6_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Conserved oligomeric complex COG6 (InterPro:IPR010490); Has 281 Blast hits to 279 proteins in 131 species: Archae - 0; Bacteria - 2; Metazoa - 132; Fungi - 106; Plants - 21; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT1G31780.1p  transcript_id AT1G31780.1  protein_id AT1G31780.1p  transcript_id AT1G31780.1  
At1g31790	chr1:011394744	0.0	C/11394744-11395973	AT1G31790.1  CDS  gene_syn F5M6.20, F5M6_20  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24000.1); Has 7816 Blast hits to 2592 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7810; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G31790.1p  transcript_id AT1G31790.1  protein_id AT1G31790.1p  transcript_id AT1G31790.1  
At1g31800	chr1:011396440	0.0	W/11396440-11396672,11396792-11397008,11397106-11397177,11397271-11397381,11397470-11397661,11397760-11397921,11397995-11398090,11398165-11398266,11398347-11398379,11398456-11398536,11398615-11398697,11398779-11398910,11398982-11399042,11399128-11399193,11399324-11399470	AT1G31800.1  CDS  gene_syn CYP97A3, CYTOCHROME P450-TYPE MONOOXYGENASE 97A3, F5M6.19, F5M6_19, LUT5, LUTEIN DEFICIENT 5  gene CYP97A3  function Encodes a protein with & 946;-ring carotenoid hydroxylase activity.  go_component chloroplast|GO:0009507|18431481|IDA  go_process carotenoid biosynthetic process|GO:0016117|16492736|IMP  go_process xanthophyll biosynthetic process|GO:0016123|16890225|IGI  go_function carotene beta-ring hydroxylase activity|GO:0010291|16492736|IMP  go_function oxygen binding|GO:0019825||ISS  product CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3); carotene beta-ring hydroxylase/ oxygen binding  note CYTOCHROME P450-TYPE MONOOXYGENASE 97A3 (CYP97A3); FUNCTIONS IN: carotene beta-ring hydroxylase activity, oxygen binding; INVOLVED IN: carotenoid biosynthetic process, xanthophyll biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: LUT1 (LUTEIN DEFICIENT 1); epsilon hydroxylase/ oxygen binding (TAIR:AT3G53130.1); Has 23486 Blast hits to 23368 proteins in 1244 species: Archae - 35; Bacteria - 2427; Metazoa - 10280; Fungi - 4519; Plants - 5162; Viruses - 3; Other Eukaryotes - 1060 (source: NCBI BLink).  protein_id AT1G31800.1p  transcript_id AT1G31800.1  protein_id AT1G31800.1p  transcript_id AT1G31800.1  
At1g31810	chr1:011405689	0.0	C/11405689-11405761,11404888-11405591,11404574-11404795,11402850-11404390,11402534-11402654,11402140-11402211,11401822-11401920,11401586-11401627,11401427-11401507,11401293-11401343,11401132-11401213,11400965-11401059,11400761-11400832,11400560-11400676,11400365-11400433,11400201-11400267,11399922-11400106	AT1G31810.1  CDS  gene_syn F5M6.18, F5M6_18  go_process cellular component organization|GO:0016043||IEA  go_process actin cytoskeleton organization|GO:0030036||IEA  go_function actin binding|GO:0003779|12417149|ISS  go_function actin binding|GO:0003779|15256004|ISS  go_function actin binding|GO:0003779||ISS  product actin binding  note actin binding; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatase tensin type (InterPro:IPR014019), Actin-binding FH2 and DRF autoregulatory (InterPro:IPR003104), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Actin-binding FH2 (InterPro:IPR015425), Tensin phosphatase, C2 domain (InterPro:IPR014020); BEST Arabidopsis thaliana protein match is: formin homology 2 domain-containing protein / FH2 domain-containing protein (TAIR:AT2G25050.1); Has 10825 Blast hits to 10134 proteins in 624 species: Archae - 8; Bacteria - 1361; Metazoa - 5689; Fungi - 1446; Plants - 921; Viruses - 306; Other Eukaryotes - 1094 (source: NCBI BLink).  protein_id AT1G31810.1p  transcript_id AT1G31810.1  protein_id AT1G31810.1p  transcript_id AT1G31810.1  
At1g31812	chr1:011412088	0.0	C/11412088-11412099,11411517-11411634,11411350-11411412,11411132-11411217	AT1G31812.1  CDS  gene_syn ACBP, ACBP6, ACYL-COA-BINDING PROTEIN, F5M6.27, F5M6_27, acyl-CoA-binding protein 6  gene ACBP6  function Acyl-CoA-binding protein. Bind acyl-CoA esters and protect acyl-CoAs from degradation by microsomal acyl-hydrolases.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytosol|GO:0005829|18621979|IDA  go_component cytosol|GO:0005829|8660683|IDA  go_process lipid transport|GO:0006869|8660683|IDA  go_process response to cold|GO:0009409|18621979|IEP  go_process response to freezing|GO:0050826|18621979|IMP  go_function acyl-CoA binding|GO:0000062|8660683|IDA  go_function acyl-CoA binding|GO:0000062||ISS  go_function phosphatidylcholine binding|GO:0031210|18621979|IDA  product ACBP6 (acyl-CoA-binding protein 6); acyl-CoA binding / phosphatidylcholine binding  note acyl-CoA-binding protein 6 (ACBP6); FUNCTIONS IN: phosphatidylcholine binding, acyl-CoA binding; INVOLVED IN: response to freezing, response to cold, lipid transport; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Acyl-CoA-binding protein, ACBP (InterPro:IPR000582), FERM/acyl-CoA-binding protein, 3-helical bundle (InterPro:IPR014352); BEST Arabidopsis thaliana protein match is: ACBP1 (ACYL-COA BINDING PROTEIN 1); acyl-CoA binding / lead ion binding (TAIR:AT5G53470.1); Has 1418 Blast hits to 1418 proteins in 304 species: Archae - 0; Bacteria - 216; Metazoa - 757; Fungi - 108; Plants - 146; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink).  protein_id AT1G31812.1p  transcript_id AT1G31812.1  protein_id AT1G31812.1p  transcript_id AT1G31812.1  
At1g31814	chr1:011412985	0.0	C/11412985-11414406	AT1G31814.1  CDS  gene_syn F5M6.26, F5M6_26, FRIGIDA LIKE 2, FRL2  gene FRL2  function family member of FRI-related genes that is required for the winter-annual habit. Genbank accession BK004885  go_process vegetative to reproductive phase transition|GO:0010228|14973192|IMP  go_function molecular_function|GO:0003674||ND  product FRL2 (FRIGIDA LIKE 2)  note FRIGIDA LIKE 2 (FRL2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vegetative to reproductive phase transition; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRL1 (FRIGIDA LIKE 1) (TAIR:AT5G16320.1); Has 847 Blast hits to 821 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 830; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G31814.1p  transcript_id AT1G31814.1  protein_id AT1G31814.1p  transcript_id AT1G31814.1  
At1g31817	chr1:011416245	0.0	C/11416245-11416356,11414932-11415764	AT1G31817.1  CDS  gene_syn F5M6.25, F5M6_25, NFD3, NUCLEAR FUSION DEFECTIVE 3  gene NFD3  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component cytosolic small ribosomal subunit|GO:0022627||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product NFD3 (NUCLEAR FUSION DEFECTIVE 3); structural constituent of ribosome  note NUCLEAR FUSION DEFECTIVE 3 (NFD3); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S11 (InterPro:IPR001971); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATCG00750.1); Has 5242 Blast hits to 5242 proteins in 1532 species: Archae - 8; Bacteria - 2826; Metazoa - 58; Fungi - 4; Plants - 484; Viruses - 0; Other Eukaryotes - 1862 (source: NCBI BLink).  protein_id AT1G31817.1p  transcript_id AT1G31817.1  protein_id AT1G31817.1p  transcript_id AT1G31817.1  
At1g31820	chr1:011416691	0.0	C/11416691-11418139	AT1G31820.1  CDS  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_process amino acid transport|GO:0006865||IEA  go_function cationic amino acid transmembrane transporter activity|GO:0015326||ISS  product amino acid permease family protein  note amino acid permease family protein; FUNCTIONS IN: cationic amino acid transmembrane transporter activity; INVOLVED IN: transport, amino acid transport; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease-associated region (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: amino acid permease family protein (TAIR:AT1G31830.2); Has 12664 Blast hits to 12658 proteins in 1140 species: Archae - 203; Bacteria - 10285; Metazoa - 671; Fungi - 701; Plants - 214; Viruses - 0; Other Eukaryotes - 590 (source: NCBI BLink).  protein_id AT1G31820.1p  transcript_id AT1G31820.1  protein_id AT1G31820.1p  transcript_id AT1G31820.1  
At1g31830	chr1:011418875	0.0	C/11418875-11420314	AT1G31830.2  CDS  gene_syn F5M6.16, F5M6_16  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_process amino acid transport|GO:0006865||IEA  go_function cationic amino acid transmembrane transporter activity|GO:0015326||ISS  product amino acid permease family protein  note amino acid permease family protein; FUNCTIONS IN: cationic amino acid transmembrane transporter activity; INVOLVED IN: transport, amino acid transport; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease-associated region (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: amino acid permease family protein (TAIR:AT1G31820.1); Has 14356 Blast hits to 14351 proteins in 1181 species: Archae - 249; Bacteria - 11483; Metazoa - 903; Fungi - 726; Plants - 243; Viruses - 0; Other Eukaryotes - 752 (source: NCBI BLink).  protein_id AT1G31830.2p  transcript_id AT1G31830.2  protein_id AT1G31830.2p  transcript_id AT1G31830.2  
At1g31830	chr1:011418875	0.0	C/11418875-11420362	AT1G31830.1  CDS  gene_syn F5M6.16, F5M6_16  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_process amino acid transport|GO:0006865||IEA  go_function cationic amino acid transmembrane transporter activity|GO:0015326||ISS  product amino acid permease family protein  note amino acid permease family protein; FUNCTIONS IN: cationic amino acid transmembrane transporter activity; INVOLVED IN: transport, amino acid transport; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease-associated region (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: amino acid permease family protein (TAIR:AT1G31820.1); Has 14358 Blast hits to 14353 proteins in 1181 species: Archae - 249; Bacteria - 11483; Metazoa - 903; Fungi - 728; Plants - 243; Viruses - 0; Other Eukaryotes - 752 (source: NCBI BLink).  protein_id AT1G31830.1p  transcript_id AT1G31830.1  protein_id AT1G31830.1p  transcript_id AT1G31830.1  
At1g31835	chr1:011423332	0.0	C/11423332-11423562	AT1G31835.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31835.1p  transcript_id AT1G31835.1  protein_id AT1G31835.1p  transcript_id AT1G31835.1  
At1g31840	chr1:011424006	0.0	W/11424006-11426528	AT1G31840.1  CDS  gene_syn F5M6.15, F5M6_15  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G22470.1); Has 23098 Blast hits to 5773 proteins in 180 species: Archae - 3; Bacteria - 16; Metazoa - 407; Fungi - 450; Plants - 21304; Viruses - 0; Other Eukaryotes - 918 (source: NCBI BLink).  protein_id AT1G31840.1p  transcript_id AT1G31840.1  protein_id AT1G31840.1p  transcript_id AT1G31840.1  
At1g31850	chr1:011431165	0.0	W/11431165-11431443,11431527-11431871,11431953-11432163,11432253-11432931,11433009-11433086,11433224-11433443	AT1G31850.1  CDS  gene_syn F5M6.14, F5M6_14  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  product dehydration-responsive protein, putative  note dehydration-responsive protein, putative; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: ERD3 (early-responsive to dehydration 3) (TAIR:AT4G19120.2); Has 539 Blast hits to 532 proteins in 52 species: Archae - 2; Bacteria - 50; Metazoa - 0; Fungi - 3; Plants - 476; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G31850.1p  transcript_id AT1G31850.1  protein_id AT1G31850.1p  transcript_id AT1G31850.1  
At1g31850	chr1:011431165	0.0	W/11431165-11431443,11431527-11431871,11431953-11432163,11432253-11432931,11433009-11433086,11433224-11433443	AT1G31850.2  CDS  gene_syn F5M6.14, F5M6_14  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  product dehydration-responsive protein, putative  note dehydration-responsive protein, putative; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: ERD3 (early-responsive to dehydration 3) (TAIR:AT4G19120.2); Has 539 Blast hits to 532 proteins in 52 species: Archae - 2; Bacteria - 50; Metazoa - 0; Fungi - 3; Plants - 476; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G31850.2p  transcript_id AT1G31850.2  protein_id AT1G31850.2p  transcript_id AT1G31850.2  
At1g31850	chr1:011431165	0.0	W/11431165-11431443,11431527-11431871,11431953-11432163,11432253-11432931,11433009-11433086,11433224-11433443	AT1G31850.3  CDS  gene_syn F5M6.14, F5M6_14  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  product dehydration-responsive protein, putative  note dehydration-responsive protein, putative; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: ERD3 (early-responsive to dehydration 3) (TAIR:AT4G19120.2); Has 539 Blast hits to 532 proteins in 52 species: Archae - 2; Bacteria - 50; Metazoa - 0; Fungi - 3; Plants - 476; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G31850.3p  transcript_id AT1G31850.3  protein_id AT1G31850.3p  transcript_id AT1G31850.3  
At1g31860	chr1:011436378	0.0	C/11436378-11436530,11434943-11435188,11434771-11434866,11434525-11434676,11434250-11434448	AT1G31860.1  CDS  gene_syn AT-IE, F5M6.13, F5M6_13, HISN2, HISTIDINE BIOSYNTHESIS 2, PHOSPHORIBOSYL-ATP PYROPHOSPHOHYDROLASE  gene AT-IE  function encodes a bifunctional protein that has phosphoribosyl-ATP pyrophosphohydrolase (PRA-PH) and phosphoribosyl-AMP cyclohydrolase (PRA-CH) activities.  go_component chloroplast|GO:0009507|18431481|IDA  go_process histidine biosynthetic process|GO:0000105|9733547|TAS  go_function phosphoribosyl-AMP cyclohydrolase activity|GO:0004635|9733547|IDA  go_function phosphoribosyl-ATP diphosphatase activity|GO:0004636|9733547|IDA  product AT-IE; phosphoribosyl-AMP cyclohydrolase/ phosphoribosyl-ATP diphosphatase  note AT-IE; FUNCTIONS IN: phosphoribosyl-ATP diphosphatase activity, phosphoribosyl-AMP cyclohydrolase activity; INVOLVED IN: histidine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribosyl-AMP cyclohydrolase (InterPro:IPR002496), Phosphoribosyl-ATP pyrophosphohydrolase (InterPro:IPR008179); Has 5745 Blast hits to 5745 proteins in 1220 species: Archae - 164; Bacteria - 2767; Metazoa - 2; Fungi - 128; Plants - 25; Viruses - 0; Other Eukaryotes - 2659 (source: NCBI BLink).  protein_id AT1G31860.1p  transcript_id AT1G31860.1  protein_id AT1G31860.1p  transcript_id AT1G31860.1  
At1g31870	chr1:011437269	0.0	W/11437269-11437464,11437584-11438496,11438774-11438841,11438930-11438994,11439090-11439193,11439283-11439355,11439456-11439636,11439736-11439821	AT1G31870.1  CDS  gene_syn F5M6.12, F5M6_12  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2050, pre-mRNA-splicing factor (InterPro:IPR018609); Has 11793 Blast hits to 8312 proteins in 386 species: Archae - 8; Bacteria - 320; Metazoa - 6710; Fungi - 1763; Plants - 711; Viruses - 126; Other Eukaryotes - 2155 (source: NCBI BLink).  protein_id AT1G31870.1p  transcript_id AT1G31870.1  protein_id AT1G31870.1p  transcript_id AT1G31870.1  
At1g31870	chr1:011437269	0.0	W/11437269-11437464,11437584-11438496,11438774-11438841,11438930-11438994,11439090-11439193,11439283-11439355,11439456-11439636,11439736-11439821	AT1G31870.2  CDS  gene_syn F5M6.12, F5M6_12  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2050, pre-mRNA-splicing factor (InterPro:IPR018609); Has 11793 Blast hits to 8312 proteins in 386 species: Archae - 8; Bacteria - 320; Metazoa - 6710; Fungi - 1763; Plants - 711; Viruses - 126; Other Eukaryotes - 2155 (source: NCBI BLink).  protein_id AT1G31870.2p  transcript_id AT1G31870.2  protein_id AT1G31870.2p  transcript_id AT1G31870.2  
At1g31875	chr1:011442913	0.0	C/11442913-11443044	AT1G31875.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G31875.1p  transcript_id AT1G31875.1  protein_id AT1G31875.1p  transcript_id AT1G31875.1  
At1g31880	chr1:011447804	0.0	W/11447804-11447917,11448826-11449217,11449315-11449444,11449547-11449866,11449975-11450053	AT1G31880.1  CDS  gene_syn BREVIS RADIX, BRX, F5M6.11, F5M6_11, NIP3;1, NLM9  gene BRX  function Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity. BRX encodes a key regulator of cell proliferation and elongation in the root, which has been implicated in the brassinosteroid (BR) pathway as well as regulation of auxin-responsive gene expression. Also involved in cytokinin-mediated inhibition of lateral root initiation. A loss-of-function allele, named brx-2 in Rodrigues et al. (2009) Plant Physiol. but changed to brx-3 to resolve nomenclature conflict (Li et al. Planta 2009:229(3):593-603), shows enhanced response to ABA-mediated inhibition of root growth.  go_component nucleus|GO:0005634|15031265|IDA  go_process auxin mediated signaling pathway|GO:0009734|19037657|IMP  go_process cytokinin mediated signaling|GO:0009736|19037657|IMP  go_process response to abscisic acid stimulus|GO:0009737|19201913|IMP  go_process root development|GO:0048364|11500536|IMP  go_process lateral root development|GO:0048527|19037657|IMP  go_function water channel activity|GO:0015250||ISS  go_function identical protein binding|GO:0042802|16514016|IPI  product BRX (BREVIS RADIX); identical protein binding / water channel  note BREVIS RADIX (BRX); FUNCTIONS IN: water channel activity, identical protein binding; INVOLVED IN: auxin mediated signaling pathway, cytokinin mediated signaling, response to abscisic acid stimulus, root development, lateral root development; LOCATED IN: nucleus; EXPRESSED IN: shoot, flower, root, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591); BEST Arabidopsis thaliana protein match is: BRXL1 (BREVIS RADIX LIKE 1) (TAIR:AT2G35600.1); Has 432 Blast hits to 241 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 430; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31880.1p  transcript_id AT1G31880.1  protein_id AT1G31880.1p  transcript_id AT1G31880.1  
At1g31885	chr1:011450460	0.0	W/11450460-11450591,11450831-11451055,11451292-11451572,11451652-11451985	AT1G31885.1  CDS  gene_syn F5M6.28, F5M6_28  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||IEA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  product transporter  note transporter; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: NIP1;2 (NOD26-LIKE INTRINSIC PROTEIN 1;2); arsenite transmembrane transporter/ water channel (TAIR:AT4G18910.1); Has 6946 Blast hits to 6877 proteins in 1256 species: Archae - 77; Bacteria - 2734; Metazoa - 1165; Fungi - 289; Plants - 1404; Viruses - 4; Other Eukaryotes - 1273 (source: NCBI BLink).  protein_id AT1G31885.1p  transcript_id AT1G31885.1  protein_id AT1G31885.1p  transcript_id AT1G31885.1  
At1g31900	chr1:011457877	0.0	W/11457877-11458134	AT1G31900.1  pseudogenic_transcript  pseudo  gene_syn F5M6.29  function pseudogene of unknown protein  note pseudogene, expressed protein (fragment)  
At1g31910	chr1:011459050	0.0	W/11459050-11459057,11459160-11459310,11459425-11459522,11459686-11459792,11459886-11459938,11460065-11460442,11460518-11460622,11460742-11460969,11461060-11461182,11461383-11461649	AT1G31910.1  CDS  gene_syn F5M6.9, F5M6_9  go_process phosphorylation|GO:0016310||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||IEA  product GHMP kinase family protein  note GHMP kinase family protein; FUNCTIONS IN: kinase activity, ATP binding; INVOLVED IN: phosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphomevalonate kinase, eukaryotic (InterPro:IPR005916), Phosphomevalonate kinase, ERG8 (InterPro:IPR016005), GHMP kinase (InterPro:IPR006204), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721), GHMP kinase, C-terminal (InterPro:IPR013750); Has 183 Blast hits to 174 proteins in 92 species: Archae - 8; Bacteria - 22; Metazoa - 0; Fungi - 96; Plants - 30; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT1G31910.1p  transcript_id AT1G31910.1  protein_id AT1G31910.1p  transcript_id AT1G31910.1  
At1g31920	chr1:011461864	0.0	C/11461864-11463684	AT1G31920.1  CDS  gene_syn F5M6.8, F5M6_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G66520.1); Has 13708 Blast hits to 5114 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 82; Fungi - 70; Plants - 13274; Viruses - 0; Other Eukaryotes - 282 (source: NCBI BLink).  protein_id AT1G31920.1p  transcript_id AT1G31920.1  protein_id AT1G31920.1p  transcript_id AT1G31920.1  
At1g31930	chr1:011465832	0.0	W/11465832-11466755,11466849-11466986,11467074-11467178,11467266-11467445,11467524-11467698,11467780-11468036,11468117-11468289,11468367-11468961	AT1G31930.1  CDS  gene_syn F5M6.7, F5M6_7, XLG3, extra-large GTP-binding protein 3  gene XLG3  function Encodes XLG3 (extra-large G protein 3) that shows significant similarity to the G protein alpha subunit in its C terminal region. Involved in the regulation of root morphological and growth responses.  go_function signal transducer activity|GO:0004871||IEA  go_function guanyl nucleotide binding|GO:0019001||IEA  go_component nucleus|GO:0005634|17999646|IDA  go_process G-protein coupled receptor protein signaling pathway|GO:0007186||ISS  go_process gravitropism|GO:0009630|18397373|IGI  go_process thigmotropism|GO:0009652|18397373|IGI  go_process response to ethylene stimulus|GO:0009723|18397373|IMP  go_process response to abscisic acid stimulus|GO:0009737|17999646|IGI  go_process response to sucrose stimulus|GO:0009744|17999646|IGI  go_process response to glucose stimulus|GO:0009749|17999646|IGI  go_process response to fructose stimulus|GO:0009750|17999646|IGI  go_process root morphogenesis|GO:0010015|17999646|IGI  go_process response to mannitol stimulus|GO:0010555|17999646|IGI  go_process root development|GO:0048364|18397373|IGI  go_function signal transducer activity|GO:0004871||ISS  product XLG3 (extra-large GTP-binding protein 3); guanyl nucleotide binding / signal transducer  note extra-large GTP-binding protein 3 (XLG3); FUNCTIONS IN: guanyl nucleotide binding, signal transducer activity; INVOLVED IN: in 11 processes; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Guanine nucleotide binding protein (G-protein), alpha subunit (InterPro:IPR001019), G protein alpha subunit, helical insertion (InterPro:IPR011025); BEST Arabidopsis thaliana protein match is: XLG1 (EXTRA-LARGE G-PROTEIN 1); guanyl nucleotide binding / signal transducer (TAIR:AT2G23460.1); Has 2808 Blast hits to 2801 proteins in 342 species: Archae - 0; Bacteria - 2; Metazoa - 1996; Fungi - 411; Plants - 232; Viruses - 0; Other Eukaryotes - 167 (source: NCBI BLink).  protein_id AT1G31930.1p  transcript_id AT1G31930.1  protein_id AT1G31930.1p  transcript_id AT1G31930.1  
At1g31930	chr1:011465832	0.0	W/11465832-11466755,11466849-11466986,11467074-11467178,11467266-11467445,11467524-11467698,11467780-11468036,11468117-11468289,11468367-11468961	AT1G31930.2  CDS  gene_syn F5M6.7, F5M6_7, XLG3, extra-large GTP-binding protein 3  gene XLG3  function Encodes XLG3 (extra-large G protein 3) that shows significant similarity to the G protein alpha subunit in its C terminal region. Involved in the regulation of root morphological and growth responses.  go_function signal transducer activity|GO:0004871||IEA  go_function guanyl nucleotide binding|GO:0019001||IEA  go_component nucleus|GO:0005634|17999646|IDA  go_process G-protein coupled receptor protein signaling pathway|GO:0007186||ISS  go_process gravitropism|GO:0009630|18397373|IGI  go_process thigmotropism|GO:0009652|18397373|IGI  go_process response to ethylene stimulus|GO:0009723|18397373|IMP  go_process response to abscisic acid stimulus|GO:0009737|17999646|IGI  go_process response to sucrose stimulus|GO:0009744|17999646|IGI  go_process response to glucose stimulus|GO:0009749|17999646|IGI  go_process response to fructose stimulus|GO:0009750|17999646|IGI  go_process root morphogenesis|GO:0010015|17999646|IGI  go_process response to mannitol stimulus|GO:0010555|17999646|IGI  go_process root development|GO:0048364|18397373|IGI  go_function signal transducer activity|GO:0004871||ISS  product XLG3 (extra-large GTP-binding protein 3); guanyl nucleotide binding / signal transducer  note extra-large GTP-binding protein 3 (XLG3); FUNCTIONS IN: signal transducer activity, guanyl nucleotide binding; INVOLVED IN: in 11 processes; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Guanine nucleotide binding protein (G-protein), alpha subunit (InterPro:IPR001019), G protein alpha subunit, helical insertion (InterPro:IPR011025); BEST Arabidopsis thaliana protein match is: XLG1 (EXTRA-LARGE G-PROTEIN 1); guanyl nucleotide binding / signal transducer (TAIR:AT2G23460.1); Has 2808 Blast hits to 2801 proteins in 342 species: Archae - 0; Bacteria - 2; Metazoa - 1996; Fungi - 411; Plants - 232; Viruses - 0; Other Eukaryotes - 167 (source: NCBI BLink).  protein_id AT1G31930.2p  transcript_id AT1G31930.2  protein_id AT1G31930.2p  transcript_id AT1G31930.2  
At1g31935	chr1:011469482	0.0	W/11469482-11470010	AT1G31935.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G31935.1  
At1g31940	chr1:011471089	0.0	C/11471089-11471154,11470621-11470800,11470293-11470523	AT1G31940.1  CDS  gene_syn F5M6.6  go_component plasma membrane|GO:0005886|17317660|IDA  product unknown protein  note unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35585.1); Has 38 Blast hits to 38 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31940.1p  transcript_id AT1G31940.1  protein_id AT1G31940.1p  transcript_id AT1G31940.1  
At1g31950	chr1:011475807	0.0	W/11475807-11476070,11476158-11476428,11476528-11476912,11477003-11477221,11477313-11477445,11477557-11477805,11477895-11478194	AT1G31950.1  CDS  gene_syn F5M6.5  go_component membrane|GO:0016020|17432890|IDA  go_process metabolic process|GO:0008152||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function lyase activity|GO:0016829||IEA  product terpene synthase/cyclase family protein  note terpene synthase/cyclase family protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; LOCATED IN: membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase/cyclase family protein (TAIR:AT3G14520.1); Has 1072 Blast hits to 1063 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1069; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G31950.1p  transcript_id AT1G31950.1  protein_id AT1G31950.1p  transcript_id AT1G31950.1  
At1g31960	chr1:011479133	0.0	C/11479133-11479654	AT1G31960.1  CDS  gene_syn F5M6.4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31960.1p  transcript_id AT1G31960.1  protein_id AT1G31960.1p  transcript_id AT1G31960.1  
At1g31970	chr1:011479921	0.0	W/11479921-11480407,11480489-11480619,11480718-11480825,11480915-11480995,11481150-11481228,11481333-11481418,11481498-11481554,11481637-11481704,11481788-11481856,11481950-11482043,11482139-11482303,11482408-11482500,11482612-11482707	AT1G31970.1  CDS  gene_syn F5M6.3, STRESS RESPONSE SUPPRESSOR 1, STRS1  gene STRS1  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function ATP-dependent helicase activity|GO:0008026||ISS  product STRS1 (STRESS RESPONSE SUPPRESSOR 1); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding  note STRESS RESPONSE SUPPRESSOR 1 (STRS1); FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ethylene-responsive DEAD box RNA helicase, putative (RH30) (TAIR:AT5G63120.2); Has 37992 Blast hits to 33273 proteins in 1868 species: Archae - 587; Bacteria - 13443; Metazoa - 8652; Fungi - 3891; Plants - 1806; Viruses - 87; Other Eukaryotes - 9526 (source: NCBI BLink).  protein_id AT1G31970.1p  transcript_id AT1G31970.1  protein_id AT1G31970.1p  transcript_id AT1G31970.1  
At1g31990	chr1:011488205	0.0	W/11488205-11489182	AT1G31990.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31990.1p  transcript_id AT1G31990.1  protein_id AT1G31990.1p  transcript_id AT1G31990.1  
At1g31983	chr1:011501674	0.0	C/11501674-11503237	AT1G31983.1  pseudogenic_transcript  pseudo  gene_syn T12O21.18  note pseudogene, hypothetical protein  
At1g31993	chr1:011503576	0.0	W/11503576-11507662	AT1G31993.1  mRNA_TE_gene  pseudo  gene_syn T12O21.11  note Transposable element gene, gypsy-like retrotransposon family, has a 3.8e-142 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At1g32000	chr1:011508577	0.0	C/11508577-11508909,11508285-11508497	AT1G32000.1  CDS  gene_syn T12O21.10, T12O21_10  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT5G38190.1); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32000.1p  transcript_id AT1G32000.1  protein_id AT1G32000.1p  transcript_id AT1G32000.1  
At1g32010	chr1:011511173	0.0	C/11511173-11512040,11510335-11511077,11509341-11510237	AT1G32010.1  CDS  gene_syn T12O21.9, T12O21_9  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product myosin heavy chain-related  note myosin heavy chain-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT5G38190.1); Has 709 Blast hits to 568 proteins in 132 species: Archae - 10; Bacteria - 80; Metazoa - 233; Fungi - 44; Plants - 68; Viruses - 0; Other Eukaryotes - 274 (source: NCBI BLink).  protein_id AT1G32010.1p  transcript_id AT1G32010.1  protein_id AT1G32010.1p  transcript_id AT1G32010.1  
At1g32020	chr1:011512552	0.0	C/11512552-11513067	AT1G32020.1  CDS  gene_syn T12O21.8, T12O21_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G26030.3); Has 795 Blast hits to 778 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 795; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32020.1p  transcript_id AT1G32020.1  protein_id AT1G32020.1p  transcript_id AT1G32020.1  
At1g32030	chr1:011514594	0.0	W/11514594-11515595	AT1G32030.1  CDS  gene_syn T12O21.7, T12O21_7  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508), Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT5G24050.1); Has 54 Blast hits to 54 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32030.1p  transcript_id AT1G32030.1  protein_id AT1G32030.1p  transcript_id AT1G32030.1  
At1g32040	chr1:011518418	0.0	W/11518418-11520070	AT1G32040.1  mRNA_TE_gene  pseudo  gene_syn T12O21.6, T12O21_6  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G06603.1)  
At1g32045	chr1:011520689	0.0	C/11520689-11520876	AT1G32045.1  mRNA_TE_gene  pseudo  gene_syn T12O21.17  note Transposable element gene, gypsy-like retrotransposon family, has a 5.7e-07 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At1g32049	chr1:011527728	0.0	W/11527728-11528207	AT1G32049.1  pseudogenic_transcript  pseudo  function unknown pseudogene  
At1g32050	chr1:011528616	0.0	W/11528616-11528678,11529142-11529234,11529313-11529375,11529468-11529501,11529618-11529740,11529839-11529901,11530011-11530104,11530191-11530236,11530320-11530387,11530644-11530692,11530775-11530840,11530942-11530974	AT1G32050.1  CDS  gene_syn T12O21.5, T12O21_5  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein transport|GO:0015031||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function transmembrane transporter activity|GO:0022857||ISS  product secretory carrier membrane protein (SCAMP) family protein  note secretory carrier membrane protein (SCAMP) family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273); BEST Arabidopsis thaliana protein match is: secretory carrier membrane protein (SCAMP) family protein (TAIR:AT2G20840.1); Has 522 Blast hits to 522 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 335; Fungi - 12; Plants - 120; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT1G32050.1p  transcript_id AT1G32050.1  protein_id AT1G32050.1p  transcript_id AT1G32050.1  
At1g32060	chr1:011532668	0.0	W/11532668-11533191,11533460-11533544,11533645-11533729,11533810-11534054,11534158-11534406	AT1G32060.1  CDS  gene_syn PHOSPHORIBULOKINASE, PRK, T12O21.4, T12O21_4  gene PRK  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_component stromule|GO:0010319|16923014|IDA  go_process biosynthetic process|GO:0009058||ISS  go_process response to cold|GO:0009409|16923014|IEP  go_process peptidyl-cysteine S-nitrosylation|GO:0018119|18297659|IDA  go_function protein binding|GO:0005515|16258009|IPI  go_function ATP binding|GO:0005524||ISS  go_function phosphoribulokinase activity|GO:0008974||ISS  product PRK (PHOSPHORIBULOKINASE); ATP binding / phosphoribulokinase/ protein binding  note PHOSPHORIBULOKINASE (PRK); FUNCTIONS IN: protein binding, phosphoribulokinase activity, ATP binding; INVOLVED IN: response to cold, defense response to bacterium, peptidyl-cysteine S-nitrosylation, biosynthetic process; LOCATED IN: in 8 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083), Phosphoribulokinase (InterPro:IPR006082); BEST Arabidopsis thaliana protein match is: uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative (TAIR:AT3G27440.1); Has 3778 Blast hits to 3778 proteins in 1337 species: Archae - 19; Bacteria - 2109; Metazoa - 288; Fungi - 89; Plants - 839; Viruses - 2; Other Eukaryotes - 432 (source: NCBI BLink).  protein_id AT1G32060.1p  transcript_id AT1G32060.1  protein_id AT1G32060.1p  transcript_id AT1G32060.1  
At1g32070	chr1:011536249	0.0	C/11536249-11536289,11536101-11536174,11535933-11535993,11535658-11535856,11535458-11535569,11535225-11535340,11535025-11535118,11534851-11534927	AT1G32070.1  CDS  gene_syn ACETYLTRANSFERASE, ATNSI, NUCLEAR SHUTTLE INTERACTING, T12O21.3, T12O21_3  gene ATNSI  function Encodes a nuclear acetyltransferase (NSI)that interacts with the geminivirus movement protein NSP. This interaction is required for viral infection and systemic spread. Acetylates the viral coat protein (CP) in vitro, but not NSP. NSP inhibits NSI activity in vitro. NSI is highly transcribed in phloem and in xylem parenchyma cells, and in the apical meristem and guard cells, within young tissues in Arabidopsis, and its expression is turned off as tissues mature.  go_component chloroplast|GO:0009507|18431481|IDA  go_component nucleus|GO:0005634|12837950|IDA  go_process metabolic process|GO:0008152||ISS  go_process pathogenesis|GO:0009405|15452236|IMP  go_process spread of virus within host|GO:0046739|15452236|IMP  go_function N-acetyltransferase activity|GO:0008080|12837950|IDA  go_function N-acetyltransferase activity|GO:0008080||ISS  product ATNSI (NUCLEAR SHUTTLE INTERACTING); N-acetyltransferase  note NUCLEAR SHUTTLE INTERACTING (ATNSI); FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: pathogenesis, spread of virus within host, metabolic process; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: GCN5-related N-acetyltransferase (GNAT) family protein (TAIR:AT1G26220.1); Has 1247 Blast hits to 1247 proteins in 336 species: Archae - 15; Bacteria - 874; Metazoa - 1; Fungi - 9; Plants - 52; Viruses - 0; Other Eukaryotes - 296 (source: NCBI BLink).  protein_id AT1G32070.1p  transcript_id AT1G32070.1  protein_id AT1G32070.1p  transcript_id AT1G32070.1  
At1g32070	chr1:011536249	0.0	C/11536249-11536289,11536101-11536177,11535933-11535993,11535658-11535856,11535458-11535569,11535225-11535337,11535025-11535118,11534851-11534927	AT1G32070.3  CDS  gene_syn ACETYLTRANSFERASE, ATNSI, NUCLEAR SHUTTLE INTERACTING, T12O21.3, T12O21_3  gene ATNSI  function Encodes a nuclear acetyltransferase (NSI)that interacts with the geminivirus movement protein NSP. This interaction is required for viral infection and systemic spread. Acetylates the viral coat protein (CP) in vitro, but not NSP. NSP inhibits NSI activity in vitro. NSI is highly transcribed in phloem and in xylem parenchyma cells, and in the apical meristem and guard cells, within young tissues in Arabidopsis, and its expression is turned off as tissues mature.  go_component chloroplast|GO:0009507|18431481|IDA  go_component nucleus|GO:0005634|12837950|IDA  go_process metabolic process|GO:0008152||ISS  go_process pathogenesis|GO:0009405|15452236|IMP  go_process spread of virus within host|GO:0046739|15452236|IMP  go_function N-acetyltransferase activity|GO:0008080|12837950|IDA  go_function N-acetyltransferase activity|GO:0008080||ISS  product ATNSI (NUCLEAR SHUTTLE INTERACTING); N-acetyltransferase  note NUCLEAR SHUTTLE INTERACTING (ATNSI); FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: pathogenesis, spread of virus within host, metabolic process; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: GCN5-related N-acetyltransferase (GNAT) family protein (TAIR:AT1G26220.1); Has 1247 Blast hits to 1247 proteins in 335 species: Archae - 15; Bacteria - 872; Metazoa - 1; Fungi - 11; Plants - 52; Viruses - 0; Other Eukaryotes - 296 (source: NCBI BLink).  protein_id AT1G32070.3p  transcript_id AT1G32070.3  protein_id AT1G32070.3p  transcript_id AT1G32070.3  
At1g32070	chr1:011536249	0.0	C/11536249-11536289,11536101-11536177,11535933-11535993,11535658-11535856,11535458-11535569,11535225-11535340,11535025-11535118,11534851-11534927	AT1G32070.2  CDS  gene_syn ACETYLTRANSFERASE, ATNSI, NUCLEAR SHUTTLE INTERACTING, T12O21.3, T12O21_3  gene ATNSI  function Encodes a nuclear acetyltransferase (NSI)that interacts with the geminivirus movement protein NSP. This interaction is required for viral infection and systemic spread. Acetylates the viral coat protein (CP) in vitro, but not NSP. NSP inhibits NSI activity in vitro. NSI is highly transcribed in phloem and in xylem parenchyma cells, and in the apical meristem and guard cells, within young tissues in Arabidopsis, and its expression is turned off as tissues mature.  go_component chloroplast|GO:0009507|18431481|IDA  go_component nucleus|GO:0005634|12837950|IDA  go_process metabolic process|GO:0008152||ISS  go_process pathogenesis|GO:0009405|15452236|IMP  go_process spread of virus within host|GO:0046739|15452236|IMP  go_function N-acetyltransferase activity|GO:0008080|12837950|IDA  go_function N-acetyltransferase activity|GO:0008080||ISS  product ATNSI (NUCLEAR SHUTTLE INTERACTING); N-acetyltransferase  note NUCLEAR SHUTTLE INTERACTING (ATNSI); FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: pathogenesis, spread of virus within host, metabolic process; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: GCN5-related N-acetyltransferase (GNAT) family protein (TAIR:AT1G26220.1); Has 1247 Blast hits to 1247 proteins in 336 species: Archae - 15; Bacteria - 874; Metazoa - 1; Fungi - 9; Plants - 52; Viruses - 0; Other Eukaryotes - 296 (source: NCBI BLink).  protein_id AT1G32070.2p  transcript_id AT1G32070.2  protein_id AT1G32070.2p  transcript_id AT1G32070.2  
At1g32080	chr1:011539481	0.0	C/11539481-11539756,11539093-11539408,11538692-11538953,11538488-11538603,11538278-11538387,11538020-11538197,11537821-11537950,11537572-11537722	AT1G32080.1  CDS  gene_syn F3C3.12  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component chloroplast inner membrane|GO:0009706|12766230|IDA  product membrane protein, putative  note membrane protein, putative; LOCATED IN: chloroplast, chloroplast inner membrane, membrane, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LrgB-like protein (InterPro:IPR007300); Has 1780 Blast hits to 1773 proteins in 641 species: Archae - 17; Bacteria - 1596; Metazoa - 0; Fungi - 36; Plants - 30; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT1G32080.1p  transcript_id AT1G32080.1  protein_id AT1G32080.1p  transcript_id AT1G32080.1  
At1g32090	chr1:011543725	0.0	C/11543725-11544041,11542955-11543107,11542723-11542858,11542542-11542643,11542339-11542458,11542178-11542258,11541763-11542103,11541438-11541683,11541019-11541343,11540696-11540929,11540244-11540609	AT1G32090.1  CDS  gene_syn F3C3.11, F3C3_11  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product early-responsive to dehydration protein-related / ERD protein-related  note early-responsive to dehydration protein-related / ERD protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: early-responsive to dehydration protein-related / ERD protein-related (TAIR:AT3G21620.1); Has 966 Blast hits to 832 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 487; Plants - 255; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT1G32090.1p  transcript_id AT1G32090.1  protein_id AT1G32090.1p  transcript_id AT1G32090.1  
At1g32100	chr1:011547606	0.0	C/11547606-11547953,11547076-11547316,11546762-11546965,11546472-11546632	AT1G32100.1  CDS  gene_syn ATPRR1, F3C3.10, F3C3_10, PINORESINOL REDUCTASE 1, PRR1, PSEUDO-RESPONSE REGULATOR 1  gene PRR1  function Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems. Shows specificity for pinoresinol and not lariciresinol.  go_component cellular_component|GO:0005575||ND  go_process lignan biosynthetic process|GO:0009807|18347017|IDA  go_function pinoresinol reductase activity|GO:0010283|10066819|ISS  go_function pinoresinol reductase activity|GO:0010283|18347017|IDA  product PRR1 (PINORESINOL REDUCTASE 1); pinoresinol reductase  note PINORESINOL REDUCTASE 1 (PRR1); FUNCTIONS IN: pinoresinol reductase activity; INVOLVED IN: lignan biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: PRR2 (PINORESINOL REDUCTASE 2); pinoresinol reductase (TAIR:AT4G13660.1); Has 1323 Blast hits to 1323 proteins in 312 species: Archae - 20; Bacteria - 479; Metazoa - 2; Fungi - 285; Plants - 389; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink).  protein_id AT1G32100.1p  transcript_id AT1G32100.1  protein_id AT1G32100.1p  transcript_id AT1G32100.1  
At1g32110	chr1:011552177	0.0	C/11552177-11552310	AT1G32110.1  pseudogenic_transcript  pseudo  gene_syn F3C3.16  note pseudogene, hypothetical protein  
At1g32120	chr1:011552926	0.0	W/11552926-11554960,11555041-11555817,11557161-11557521,11558161-11558608	AT1G32120.1  CDS  gene_syn F3C3.9, F3C3_9  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16050.1); Has 14952 Blast hits to 8053 proteins in 439 species: Archae - 2; Bacteria - 783; Metazoa - 6894; Fungi - 2054; Plants - 825; Viruses - 164; Other Eukaryotes - 4230 (source: NCBI BLink).  protein_id AT1G32120.1p  transcript_id AT1G32120.1  protein_id AT1G32120.1p  transcript_id AT1G32120.1  
At1g32130	chr1:011561767	0.0	C/11561767-11561786,11561078-11561534,11560872-11560991,11560568-11560788,11560357-11560486,11560209-11560271,11560044-11560121,11559875-11559966,11559726-11559782,11559465-11559636,11559146-11559244	AT1G32130.1  CDS  gene_syn F3C3.8, F3C3_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TFIIS N-terminal (InterPro:IPR017923), IWS1, C-terminal (InterPro:IPR008654); BEST Arabidopsis thaliana protein match is: IWS1 C-terminus family protein (TAIR:AT4G19000.1); Has 907 Blast hits to 871 proteins in 182 species: Archae - 4; Bacteria - 14; Metazoa - 417; Fungi - 195; Plants - 42; Viruses - 8; Other Eukaryotes - 227 (source: NCBI BLink).  protein_id AT1G32130.1p  transcript_id AT1G32130.1  protein_id AT1G32130.1p  transcript_id AT1G32130.1  
At1g32140	chr1:011563643	0.0	C/11563643-11564833,11562742-11563326	AT1G32140.1  CDS  gene_syn F3C3.15, F3C3_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G19890.1); Has 886 Blast hits to 510 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 886; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32140.1p  transcript_id AT1G32140.1  protein_id AT1G32140.1p  transcript_id AT1G32140.1  
At1g32150	chr1:011566022	0.0	W/11566022-11566120,11566203-11566262,11566338-11566412,11566636-11566725,11566814-11566873,11566953-11567122,11567247-11567301,11567390-11567420,11567527-11567759,11567832-11567909,11568004-11568129,11568225-11568317	AT1G32150.1  CDS  gene_syn F3C3.7, F3C3_7  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process transcription, DNA-dependent|GO:0006351||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  product bZIP transcription factor family protein  note bZIP transcription factor family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: transcription, DNA-dependent, regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), G-box binding, MFMR (InterPro:IPR012900), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT2G35530.1); Has 4481 Blast hits to 3076 proteins in 314 species: Archae - 9; Bacteria - 333; Metazoa - 1321; Fungi - 512; Plants - 1017; Viruses - 24; Other Eukaryotes - 1265 (source: NCBI BLink).  protein_id AT1G32150.1p  transcript_id AT1G32150.1  protein_id AT1G32150.1p  transcript_id AT1G32150.1  
At1g32160	chr1:011568701	0.0	W/11568701-11568811,11568999-11569285,11569419-11570241	AT1G32160.1  CDS  gene_syn F3C3.6, F3C3_6  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF760 (InterPro:IPR008479); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17800.2); Has 83 Blast hits to 83 proteins in 18 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G32160.1p  transcript_id AT1G32160.1  protein_id AT1G32160.1p  transcript_id AT1G32160.1  
At1g32170	chr1:011575434	0.0	W/11575434-11575620,11575717-11575817,11576227-11576435,11577242-11577776	AT1G32170.1  CDS  gene_syn F3C3.5, F3C3_5, XTH30, XTR4, XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4, XYLOGLUCAN ENDOTRANSGLYCOSYLASE-RELATED PROTEIN  gene XTR4  function xyloglucan endotransglycosylase-related protein (XTR4)  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process cellular glucan metabolic process|GO:0006073||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762||IEA  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4); hydrolase, acting on glycosyl bonds / hydrolase, hydrolyzing O-glycosyl compounds / xyloglucan:xyloglucosyl transferase  note XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4 (XTR4); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative (TAIR:AT4G18990.1); Has 1302 Blast hits to 1296 proteins in 208 species: Archae - 2; Bacteria - 178; Metazoa - 0; Fungi - 258; Plants - 796; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT1G32170.1p  transcript_id AT1G32170.1  protein_id AT1G32170.1p  transcript_id AT1G32170.1  
At1g32172	chr1:011578506	0.0	W/11578506-11580547	AT1G32172.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G32172.1  
At1g32180	chr1:011589287	0.0	C/11589287-11589651,11588339-11589167,11586516-11588261	AT1G32180.1  CDS  gene_syn ATCSLD6, CELLULOSE SYNTHASE LIKE D6, CSLD6, F3C3.4, F3C3_4  gene ATCSLD6  function encodes a gene similar to cellulose synthase  go_component membrane|GO:0016020||IEA  go_process cellulose biosynthetic process|GO:0030244||IEA  go_process polysaccharide biosynthetic process|GO:0000271||ISS  go_process plant-type cell wall biogenesis|GO:0009832||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  product ATCSLD6; cellulose synthase/ transferase, transferring glycosyl groups  note ATCSLD6; FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: plant-type cell wall biogenesis, cellulose biosynthetic process, polysaccharide biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: leaf whorl, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: CSLD2 (CELLULOSE-SYNTHASE LIKE D2); cellulose synthase/ transferase, transferring glycosyl groups (TAIR:AT5G16910.1); Has 2240 Blast hits to 1820 proteins in 404 species: Archae - 4; Bacteria - 912; Metazoa - 5; Fungi - 12; Plants - 1249; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT1G32180.1p  transcript_id AT1G32180.1  protein_id AT1G32180.1p  transcript_id AT1G32180.1  
At1g32190	chr1:011595403	0.0	C/11595403-11595481,11594633-11594664,11594172-11594408,11593769-11593816,11593059-11593676	AT1G32190.2  CDS  gene_syn F3C3.3, F3C3_3  go_component plasma membrane|GO:0005886|17317660|IDA  product unknown protein  note unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24320.1); Has 7362 Blast hits to 3936 proteins in 436 species: Archae - 0; Bacteria - 501; Metazoa - 5129; Fungi - 69; Plants - 221; Viruses - 11; Other Eukaryotes - 1431 (source: NCBI BLink).  protein_id AT1G32190.2p  transcript_id AT1G32190.2  protein_id AT1G32190.2p  transcript_id AT1G32190.2  
At1g32190	chr1:011595403	0.0	C/11595403-11595731,11594628-11594664,11594172-11594408,11593769-11593816,11593059-11593676	AT1G32190.1  CDS  gene_syn F3C3.3, F3C3_3  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  product unknown protein  note INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24320.1); Has 8192 Blast hits to 4778 proteins in 522 species: Archae - 0; Bacteria - 690; Metazoa - 5331; Fungi - 155; Plants - 259; Viruses - 14; Other Eukaryotes - 1743 (source: NCBI BLink).  protein_id AT1G32190.1p  transcript_id AT1G32190.1  protein_id AT1G32190.1p  transcript_id AT1G32190.1  
At1g32200	chr1:011604686	0.0	C/11604686-11605001,11604194-11604291,11603986-11604072,11603791-11603888,11603580-11603637,11603375-11603476,11603241-11603302,11603033-11603143,11602852-11602930,11602657-11602776,11602448-11602561,11602223-11602357	AT1G32200.1  CDS  gene_syn ACT1, ACYLTRANSFERASE 1, ATS1, F3C3.13, F3C3_13, GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE  gene ATS1  function Encodes a chloroplast glycerol-3-phosphate acyltransferase.Involved in the biosynthesis of chloroplast phosphatidylglycerol.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component plastid|GO:0009536|7678766|NAS  go_component chloroplast stroma|GO:0009570|16774646|IDA  go_process phosphatidylglycerol biosynthetic process|GO:0006655|16774646|IMP  go_function glycerol-3-phosphate O-acyltransferase activity|GO:0004366|7678766|IDA  product ATS1; glycerol-3-phosphate O-acyltransferase  note ATS1; FUNCTIONS IN: glycerol-3-phosphate O-acyltransferase activity; INVOLVED IN: phosphatidylglycerol biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123), Glycerol-3-phosphate O-acyltransferase (InterPro:IPR016222); Has 333 Blast hits to 333 proteins in 85 species: Archae - 0; Bacteria - 46; Metazoa - 0; Fungi - 0; Plants - 269; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G32200.1p  transcript_id AT1G32200.1  protein_id AT1G32200.1p  transcript_id AT1G32200.1  
At1g32200	chr1:011604686	0.0	C/11604686-11605001,11604194-11604291,11603986-11604072,11603791-11603888,11603580-11603637,11603375-11603476,11603241-11603302,11603033-11603143,11602852-11602930,11602657-11602776,11602448-11602561,11602223-11602357	AT1G32200.2  CDS  gene_syn ACT1, ACYLTRANSFERASE 1, ATS1, F3C3.13, F3C3_13, GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE  gene ATS1  function Encodes a chloroplast glycerol-3-phosphate acyltransferase.Involved in the biosynthesis of chloroplast phosphatidylglycerol.  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastid|GO:0009536|7678766|NAS  go_component chloroplast stroma|GO:0009570|16774646|IDA  go_process phosphatidylglycerol biosynthetic process|GO:0006655|16774646|IMP  go_function glycerol-3-phosphate O-acyltransferase activity|GO:0004366|7678766|IDA  product ATS1; glycerol-3-phosphate O-acyltransferase  note ATS1; FUNCTIONS IN: glycerol-3-phosphate O-acyltransferase activity; INVOLVED IN: phosphatidylglycerol biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123), Glycerol-3-phosphate O-acyltransferase (InterPro:IPR016222); Has 333 Blast hits to 333 proteins in 85 species: Archae - 0; Bacteria - 46; Metazoa - 0; Fungi - 0; Plants - 269; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G32200.2p  transcript_id AT1G32200.2  protein_id AT1G32200.2p  transcript_id AT1G32200.2  
At1g32210	chr1:011607569	0.0	C/11607569-11607652,11607416-11607463,11606846-11606933,11606713-11606756,11606047-11606130	AT1G32210.1  CDS  gene_syn ATDAD1, DEFENDER AGAINST APOPTOTIC DEATH 1, F3C3.14, F3C3_14  gene ATDAD1  function Encodes protein involved in suppression of apoptosis. Complements a mammalian apoptosis suppressor mutation.  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component membrane|GO:0016020|9225471|ISS  go_process anti-apoptosis|GO:0006916|9225471|IGI  go_function molecular_function|GO:0003674||ND  product ATDAD1 (DEFENDER AGAINST APOPTOTIC DEATH 1)  note DEFENDER AGAINST APOPTOTIC DEATH 1 (ATDAD1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anti-apoptosis; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Defender against death DAD protein (InterPro:IPR003038); BEST Arabidopsis thaliana protein match is: DAD2 (DEFENDER AGAINST CELL DEATH 2) (TAIR:AT2G35520.1); Has 338 Blast hits to 338 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 152; Fungi - 77; Plants - 74; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT1G32210.1p  transcript_id AT1G32210.1  protein_id AT1G32210.1p  transcript_id AT1G32210.1  
At1g32220	chr1:011608038	0.0	W/11608038-11608126,11608348-11608450,11608538-11608626,11608720-11608775,11608871-11609017,11609101-11609226,11609311-11609591	AT1G32220.1  CDS  gene_syn F3C3.2, F3C3_2  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  go_component plastoglobule|GO:0010287|16461379|IDA  go_process response to oxidative stress|GO:0006979|18614705|IMP  product binding / catalytic/ coenzyme binding  note binding / catalytic/ coenzyme binding; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: response to oxidative stress; LOCATED IN: thylakoid, chloroplast, plastoglobule; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: binding / catalytic/ coenzyme binding (TAIR:AT5G10730.1); Has 499 Blast hits to 498 proteins in 184 species: Archae - 8; Bacteria - 193; Metazoa - 18; Fungi - 98; Plants - 68; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).  protein_id AT1G32220.1p  transcript_id AT1G32220.1  protein_id AT1G32220.1p  transcript_id AT1G32220.1  
At1g32225	chr1:011610116	0.0	W/11610116-11610289	AT1G32225.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast.  protein_id AT1G32225.1p  transcript_id AT1G32225.1  protein_id AT1G32225.1p  transcript_id AT1G32225.1  
At1g32230	chr1:011613427	0.0	W/11613427-11614550,11614659-11614906,11615232-11615311,11615402-11615560,11615644-11615739,11615832-11615894	AT1G32230.1  CDS  gene_syn ARABIDOPSIS THALIANA P8 (INTERACTING PROTEIN), ATP8, CEO, CEO1, F3C3.1, F3C3_1, RADICAL-INDUCED CELL DEATH1, RCD1  gene RCD1  function Encodes a protein belonging to the (ADP-ribosyl)transferase domain-containing subfamily of WWE protein-protein interaction domain protein family. Superoxide radicals are necessary and sufficient to propagate cell death or lesion formation in rcd1 mutants. Without stress treatment, RCD1 is localized in the nucleus. Under high salt or oxidative stress, RCD1 is found not only in the nucleus but also in the cytoplasm.  go_component nucleus|GO:0005634|11018516|ISS  go_component nucleus|GO:0005634|17023541|IDA  go_component cytoplasm|GO:0005737|17023541|IDA  go_process response to superoxide|GO:0000303|11041881|IMP  go_process oxygen and reactive oxygen species metabolic process|GO:0006800|17023541|IMP  go_process nitric oxide biosynthetic process|GO:0006809|19054359|IMP  go_process response to oxidative stress|GO:0006979|11018516|IGI  go_process response to water deprivation|GO:0009414|15208394|IMP  go_process response to salt stress|GO:0009651|17023541|IMP  go_process response to ethylene stimulus|GO:0009723|11041881|IMP  go_process defense response to bacterium, incompatible interaction|GO:0009816|11041881|IMP  go_process jasmonic acid mediated signaling pathway|GO:0009867|11041881|IMP  go_process ethylene mediated signaling pathway|GO:0009873|11041881|IMP  go_process response to ozone|GO:0010193|11041881|IMP  go_process programmed cell death|GO:0012501|15728341|IMP  go_process response to hydrogen peroxide|GO:0042542|11041881|IMP  go_function protein binding|GO:0005515|11018516|IPI  product RCD1 (RADICAL-INDUCED CELL DEATH1); protein binding  note RADICAL-INDUCED CELL DEATH1 (RCD1); FUNCTIONS IN: protein binding; INVOLVED IN: in 13 processes; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WWE domain (InterPro:IPR004170), Poly(ADP-ribose) polymerase, catalytic region (InterPro:IPR012317); BEST Arabidopsis thaliana protein match is: SRO1 (SIMILAR TO RCD ONE 1); NAD+ ADP-ribosyltransferase (TAIR:AT2G35510.1); Has 98 Blast hits to 98 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G32230.1p  transcript_id AT1G32230.1  protein_id AT1G32230.1p  transcript_id AT1G32230.1  
At1g32230	chr1:011613427	0.0	W/11613427-11614550,11614659-11614906,11615232-11615311,11615405-11615560,11615644-11615739,11615832-11615894	AT1G32230.2  CDS  gene_syn ARABIDOPSIS THALIANA P8 (INTERACTING PROTEIN), ATP8, CEO, CEO1, F3C3.1, F3C3_1, RADICAL-INDUCED CELL DEATH1, RCD1  gene RCD1  function Encodes a protein belonging to the (ADP-ribosyl)transferase domain-containing subfamily of WWE protein-protein interaction domain protein family. Superoxide radicals are necessary and sufficient to propagate cell death or lesion formation in rcd1 mutants. Without stress treatment, RCD1 is localized in the nucleus. Under high salt or oxidative stress, RCD1 is found not only in the nucleus but also in the cytoplasm.  go_component nucleus|GO:0005634|11018516|ISS  go_component nucleus|GO:0005634|17023541|IDA  go_component cytoplasm|GO:0005737|17023541|IDA  go_process response to superoxide|GO:0000303|11041881|IMP  go_process oxygen and reactive oxygen species metabolic process|GO:0006800|17023541|IMP  go_process nitric oxide biosynthetic process|GO:0006809|19054359|IMP  go_process response to oxidative stress|GO:0006979|11018516|IGI  go_process response to water deprivation|GO:0009414|15208394|IMP  go_process response to salt stress|GO:0009651|17023541|IMP  go_process response to ethylene stimulus|GO:0009723|11041881|IMP  go_process defense response to bacterium, incompatible interaction|GO:0009816|11041881|IMP  go_process jasmonic acid mediated signaling pathway|GO:0009867|11041881|IMP  go_process ethylene mediated signaling pathway|GO:0009873|11041881|IMP  go_process response to ozone|GO:0010193|11041881|IMP  go_process programmed cell death|GO:0012501|15728341|IMP  go_process response to hydrogen peroxide|GO:0042542|11041881|IMP  go_function protein binding|GO:0005515|11018516|IPI  product RCD1 (RADICAL-INDUCED CELL DEATH1); protein binding  note RADICAL-INDUCED CELL DEATH1 (RCD1); FUNCTIONS IN: protein binding; INVOLVED IN: in 13 processes; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WWE domain (InterPro:IPR004170), Poly(ADP-ribose) polymerase, catalytic region (InterPro:IPR012317); BEST Arabidopsis thaliana protein match is: SRO1 (SIMILAR TO RCD ONE 1); NAD+ ADP-ribosyltransferase (TAIR:AT2G35510.1); Has 99 Blast hits to 98 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G32230.2p  transcript_id AT1G32230.2  protein_id AT1G32230.2p  transcript_id AT1G32230.2  
At1g32230	chr1:011613427	0.0	W/11613427-11614550,11614659-11614906,11615232-11615311,11615405-11615560,11615644-11615748	AT1G32230.3  CDS  gene_syn ARABIDOPSIS THALIANA P8 (INTERACTING PROTEIN), ATP8, CEO, CEO1, F3C3.1, F3C3_1, RADICAL-INDUCED CELL DEATH1, RCD1  gene RCD1  function Encodes a protein belonging to the (ADP-ribosyl)transferase domain-containing subfamily of WWE protein-protein interaction domain protein family. Superoxide radicals are necessary and sufficient to propagate cell death or lesion formation in rcd1 mutants. Without stress treatment, RCD1 is localized in the nucleus. Under high salt or oxidative stress, RCD1 is found not only in the nucleus but also in the cytoplasm.  go_component nucleus|GO:0005634|11018516|ISS  go_component nucleus|GO:0005634|17023541|IDA  go_component cytoplasm|GO:0005737|17023541|IDA  go_process response to superoxide|GO:0000303|11041881|IMP  go_process oxygen and reactive oxygen species metabolic process|GO:0006800|17023541|IMP  go_process nitric oxide biosynthetic process|GO:0006809|19054359|IMP  go_process response to oxidative stress|GO:0006979|11018516|IGI  go_process response to water deprivation|GO:0009414|15208394|IMP  go_process response to salt stress|GO:0009651|17023541|IMP  go_process response to ethylene stimulus|GO:0009723|11041881|IMP  go_process defense response to bacterium, incompatible interaction|GO:0009816|11041881|IMP  go_process jasmonic acid mediated signaling pathway|GO:0009867|11041881|IMP  go_process ethylene mediated signaling pathway|GO:0009873|11041881|IMP  go_process response to ozone|GO:0010193|11041881|IMP  go_process programmed cell death|GO:0012501|15728341|IMP  go_process response to hydrogen peroxide|GO:0042542|11041881|IMP  go_function protein binding|GO:0005515|11018516|IPI  product RCD1 (RADICAL-INDUCED CELL DEATH1); protein binding  note RADICAL-INDUCED CELL DEATH1 (RCD1); FUNCTIONS IN: protein binding; INVOLVED IN: in 13 processes; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WWE domain (InterPro:IPR004170), Poly(ADP-ribose) polymerase, catalytic region (InterPro:IPR012317); BEST Arabidopsis thaliana protein match is: SRO1 (SIMILAR TO RCD ONE 1); NAD+ ADP-ribosyltransferase (TAIR:AT2G35510.1).  protein_id AT1G32230.3p  transcript_id AT1G32230.3  protein_id AT1G32230.3p  transcript_id AT1G32230.3  
At1g32240	chr1:011629644	0.0	C/11629644-11630355,11629471-11629547,11627996-11628041,11627720-11627864,11626726-11626786,11625882-11626007	AT1G32240.1  CDS  gene_syn F27G20.7, F27G20_7, KAN2, KANADI 2  gene KAN2  function Encodes a member of the KANADI family of putative transcription factors. Together with KAN1, this gene appears to be involved in the development of the carpel and the outer integument of the ovule.Along with KAN1 and KAN4 appears to regulate the proper localization of PIN1 in early embryogenesis.  go_process polarity specification of adaxial/abaxial axis|GO:0009944|17601823|IGI  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process carpel development|GO:0048440|16623911|IGI  go_process ovule development|GO:0048481|16623911|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product KAN2 (KANADI 2); DNA binding / transcription factor  note KANADI 2 (KAN2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: ovule development, carpel development, polarity specification of adaxial/abaxial axis, regulation of transcription; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KAN (KANADI); transcription factor (TAIR:AT5G16560.1); Has 1029 Blast hits to 1025 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 72; Fungi - 17; Plants - 877; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT1G32240.1p  transcript_id AT1G32240.1  protein_id AT1G32240.1p  transcript_id AT1G32240.1  
At1g32250	chr1:011639843	0.0	W/11639843-11640343	AT1G32250.1  CDS  gene_syn F27G20.1  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calmodulin, putative  note calmodulin, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin, putative (TAIR:AT3G03000.1); Has 17259 Blast hits to 13069 proteins in 1306 species: Archae - 0; Bacteria - 60; Metazoa - 7384; Fungi - 4408; Plants - 2940; Viruses - 0; Other Eukaryotes - 2467 (source: NCBI BLink).  protein_id AT1G32250.1p  transcript_id AT1G32250.1  protein_id AT1G32250.1p  transcript_id AT1G32250.1  
At1g32260	chr1:011641654	0.0	C/11641654-11641784,11640760-11641237	AT1G32260.1  CDS  gene_syn F27G20.13  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35480.1); Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32260.1p  transcript_id AT1G32260.1  protein_id AT1G32260.1p  transcript_id AT1G32260.1  
At1g32270	chr1:011642593	0.0	W/11642593-11643050,11643412-11643505,11643635-11643774,11643967-11644026,11644111-11644265,11644582-11644682,11644720-11644962	AT1G32270.1  CDS  gene_syn ATSYP24, F27G20.2, SYNTAXIN 24, SYP24  gene ATSYP24  function member of SYP2 Gene Family  go_function SNAP receptor activity|GO:0005484||IEA  go_function protein binding|GO:0005515||IEA  go_component integral to membrane|GO:0016021|10831610|TAS  go_process intra-Golgi vesicle-mediated transport|GO:0006891|11115874|TAS  go_process membrane fusion|GO:0006944|10831610|ISS  product ATSYP24; SNAP receptor/ protein binding  note ATSYP24; FUNCTIONS IN: protein binding, SNAP receptor activity; INVOLVED IN: membrane fusion, intra-Golgi vesicle-mediated transport; LOCATED IN: integral to membrane; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptor (TAIR:AT4G17730.2); Has 943 Blast hits to 943 proteins in 150 species: Archae - 0; Bacteria - 4; Metazoa - 340; Fungi - 146; Plants - 392; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT1G32270.1p  transcript_id AT1G32270.1  protein_id AT1G32270.1p  transcript_id AT1G32270.1  
At1g32280	chr1:011646220	0.0	W/11646220-11646535,11646794-11646816	AT1G32280.1  CDS  gene_syn F27G20.3  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT5G56480.1); Has 39 Blast hits to 39 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32280.1p  transcript_id AT1G32280.1  protein_id AT1G32280.1p  transcript_id AT1G32280.1  
At1g32290	chr1:011650441	0.0	C/11650441-11650567,11650222-11650337	AT1G32290.1  CDS  gene_syn F27G20.4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 5 Blast hits to 3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G32290.1p  transcript_id AT1G32290.1  protein_id AT1G32290.1p  transcript_id AT1G32290.1  
At1g32300	chr1:011651342	0.0	W/11651342-11652260,11652394-11652495,11652599-11653365	AT1G32300.1  CDS  gene_syn F27G20.8  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_function catalytic activity|GO:0003824||IEA  go_function D-arabinono-1,4-lactone oxidase activity|GO:0003885||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: D-arabinono-1,4-lactone oxidase (InterPro:IPR007173), FAD-binding, type 2 (InterPro:IPR016166), Plant-specific FAD-dependent oxidoreductase (InterPro:IPR010030), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT5G56490.1); Has 1433 Blast hits to 1401 proteins in 423 species: Archae - 12; Bacteria - 808; Metazoa - 78; Fungi - 161; Plants - 138; Viruses - 0; Other Eukaryotes - 236 (source: NCBI BLink).  protein_id AT1G32300.1p  transcript_id AT1G32300.1  protein_id AT1G32300.1p  transcript_id AT1G32300.1  
At1g32310	chr1:011653619	0.0	W/11653619-11653769,11654130-11654240,11654498-11654538	AT1G32310.1  CDS  gene_syn F27G20.14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 12 Blast hits to 12 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32310.1p  transcript_id AT1G32310.1  protein_id AT1G32310.1p  transcript_id AT1G32310.1  
At1g32320	chr1:011655156	0.0	W/11655156-11656073	AT1G32320.1  CDS  gene_syn ATMKK10, F27G20.9  gene ATMKK10  function member of MAP Kinase Kinase  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function MAP kinase kinase activity|GO:0004708|11875555|TAS  go_function kinase activity|GO:0016301||ISS  product ATMKK10; MAP kinase kinase/ kinase  note ATMKK10; FUNCTIONS IN: MAP kinase kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: MKK9 (MAP KINASE KINASE 9); MAP kinase kinase/ kinase/ protein kinase activator (TAIR:AT1G73500.1); Has 85972 Blast hits to 85062 proteins in 2566 species: Archae - 81; Bacteria - 7492; Metazoa - 37502; Fungi - 7512; Plants - 16953; Viruses - 498; Other Eukaryotes - 15934 (source: NCBI BLink).  protein_id AT1G32320.1p  transcript_id AT1G32320.1  protein_id AT1G32320.1p  transcript_id AT1G32320.1  
At1g32330	chr1:011659947	0.0	C/11659947-11660234,11657370-11658526,11657265-11657277	AT1G32330.1  CDS  gene_syn ATHSFA1D, F27G20.6, HEAT SHOCK TRANSCRIPTION FACTOR A1D, HSFA1D  gene ATHSFA1D  function member of Heat Stress Transcription Factor (Hsf) family  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product ATHSFA1D; DNA binding / transcription factor  note ATHSFA1D; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: HSF1 (HEAT SHOCK FACTOR 1); DNA binding / protein binding / transcription factor (TAIR:AT4G17750.1); Has 1524 Blast hits to 1516 proteins in 178 species: Archae - 0; Bacteria - 6; Metazoa - 349; Fungi - 328; Plants - 517; Viruses - 2; Other Eukaryotes - 322 (source: NCBI BLink).  protein_id AT1G32330.1p  transcript_id AT1G32330.1  protein_id AT1G32330.1p  transcript_id AT1G32330.1  
At1g32337	chr1:011661815	0.0	W/11661815-11661934,11662084-11662122	AT1G32337.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46390.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32337.1p  transcript_id AT1G32337.1  protein_id AT1G32337.1p  transcript_id AT1G32337.1  
At1g32340	chr1:011665462	0.0	C/11665462-11666037,11665292-11665366,11664699-11665206,11664237-11664622,11663937-11664163,11663683-11663848,11663462-11663590	AT1G32340.1  CDS  gene_syn F27G20.5, NHL8  gene NHL8  function Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not detected under normal conditions and in response to cucumber mosaic virus or spermine.  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product NHL8; protein binding / zinc ion binding  note NHL8; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), RWD (InterPro:IPR006575); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT3G14250.1); Has 2864 Blast hits to 2483 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 1555; Fungi - 382; Plants - 366; Viruses - 7; Other Eukaryotes - 554 (source: NCBI BLink).  protein_id AT1G32340.1p  transcript_id AT1G32340.1  protein_id AT1G32340.1p  transcript_id AT1G32340.1  
At1g32350	chr1:011668162	0.0	C/11668162-11668569,11667869-11668062,11667394-11667688,11667237-11667296	AT1G32350.1  CDS  gene_syn AOX1D, F27G20.12, alternative oxidase 1D  gene AOX1D  go_component mitochondrion|GO:0005739||IEA  go_component mitochondrial envelope|GO:0005740||IEA  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_process oxidation reduction|GO:0055114|9349280|TAS  go_function alternative oxidase activity|GO:0009916||ISS  product AOX1D (alternative oxidase 1D); alternative oxidase  note alternative oxidase 1D (AOX1D); FUNCTIONS IN: alternative oxidase activity; INVOLVED IN: oxidation reduction, response to cyclopentenone; LOCATED IN: mitochondrial envelope, mitochondrion; EXPRESSED IN: stem, sepal, stamen, leaf; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Alternative oxidase (InterPro:IPR002680); BEST Arabidopsis thaliana protein match is: AOX1A (ALTERNATIVE OXIDASE 1A); alternative oxidase (TAIR:AT3G22370.1); Has 1055 Blast hits to 1055 proteins in 175 species: Archae - 0; Bacteria - 81; Metazoa - 6; Fungi - 138; Plants - 257; Viruses - 0; Other Eukaryotes - 573 (source: NCBI BLink).  protein_id AT1G32350.1p  transcript_id AT1G32350.1  protein_id AT1G32350.1p  transcript_id AT1G32350.1  
At1g32360	chr1:011673325	0.0	W/11673325-11674189,11674873-11675162	AT1G32360.1  CDS  gene_syn F27G20.10  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product zinc finger (CCCH-type) family protein  note zinc finger (CCCH-type) family protein; FUNCTIONS IN: transcription factor activity, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein (TAIR:AT2G35430.1); Has 12570 Blast hits to 5044 proteins in 533 species: Archae - 13; Bacteria - 2548; Metazoa - 4525; Fungi - 570; Plants - 3231; Viruses - 221; Other Eukaryotes - 1462 (source: NCBI BLink).  protein_id AT1G32360.1p  transcript_id AT1G32360.1  protein_id AT1G32360.1p  transcript_id AT1G32360.1  
At1g32361	chr1:011675531	0.0	W/11675531-11676529	AT1G32361.1  CDS  gene_syn ATL1F  gene ATL1F  function Putative RING-H2 finger protein ATL1F precursor.  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product ATL1F; protein binding / zinc ion binding  note ATL1F; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G35420.1); Has 6104 Blast hits to 6091 proteins in 217 species: Archae - 0; Bacteria - 6; Metazoa - 2127; Fungi - 433; Plants - 2478; Viruses - 39; Other Eukaryotes - 1021 (source: NCBI BLink).  protein_id AT1G32361.1p  transcript_id AT1G32361.1  protein_id AT1G32361.1p  transcript_id AT1G32361.1  
At1g32370	chr1:011677005	0.0	W/11677005-11677145,11677439-11677504,11677587-11677651,11677833-11677923,11678024-11678032	AT1G32370.4  CDS  gene_syn F5D14.14, F5D14_14, TOBAMOVIRUS MULTIPLICATION 2B, TOM2B, TTM1  gene TOM2B  function Encodes a 122 amino acid basic protein involved in tobamovirus multiplication in planta.  go_process viral replication complex formation and maintenance|GO:0046786|12514139|IMP  go_function molecular_function|GO:0003674||ND  product TOM2B (TOBAMOVIRUS MULTIPLICATION 2B)  note TOBAMOVIRUS MULTIPLICATION 2B (TOM2B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: viral replication complex formation and maintenance; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 13 Blast hits to 13 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32370.4p  transcript_id AT1G32370.4  protein_id AT1G32370.4p  transcript_id AT1G32370.4  
At1g32370	chr1:011677005	0.0	W/11677005-11677145,11677439-11677504,11677587-11677651,11677833-11677923,11678058-11678072	AT1G32370.3  CDS  gene_syn F5D14.14, F5D14_14, TOBAMOVIRUS MULTIPLICATION 2B, TOM2B, TTM1  gene TOM2B  function Encodes a 122 amino acid basic protein involved in tobamovirus multiplication in planta.  go_process viral replication complex formation and maintenance|GO:0046786|12514139|IMP  go_function molecular_function|GO:0003674||ND  product TOM2B (TOBAMOVIRUS MULTIPLICATION 2B)  note TOBAMOVIRUS MULTIPLICATION 2B (TOM2B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: viral replication complex formation and maintenance; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 13 Blast hits to 13 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32370.3p  transcript_id AT1G32370.3  protein_id AT1G32370.3p  transcript_id AT1G32370.3  
At1g32370	chr1:011677005	0.0	W/11677005-11677145,11677439-11677504,11677587-11677651,11677833-11677925,11678058-11678088	AT1G32370.2  CDS  gene_syn F5D14.14, F5D14_14, TOBAMOVIRUS MULTIPLICATION 2B, TOM2B, TTM1  gene TOM2B  function Encodes a 122 amino acid basic protein involved in tobamovirus multiplication in planta.  go_process viral replication complex formation and maintenance|GO:0046786|12514139|IMP  go_function molecular_function|GO:0003674||ND  product TOM2B (TOBAMOVIRUS MULTIPLICATION 2B)  note TOBAMOVIRUS MULTIPLICATION 2B (TOM2B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: viral replication complex formation and maintenance; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 13 Blast hits to 13 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32370.2p  transcript_id AT1G32370.2  protein_id AT1G32370.2p  transcript_id AT1G32370.2  
At1g32370	chr1:011677005	0.0	W/11677005-11677145,11677439-11677504,11677587-11677651,11677833-11677929	AT1G32370.1  CDS  gene_syn F5D14.14, F5D14_14, TOBAMOVIRUS MULTIPLICATION 2B, TOM2B, TTM1  gene TOM2B  function Encodes a 122 amino acid basic protein involved in tobamovirus multiplication in planta.  go_process viral replication complex formation and maintenance|GO:0046786|12514139|IMP  go_function molecular_function|GO:0003674||ND  product TOM2B (TOBAMOVIRUS MULTIPLICATION 2B)  note TOBAMOVIRUS MULTIPLICATION 2B (TOM2B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: viral replication complex formation and maintenance; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 13 Blast hits to 13 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32370.1p  transcript_id AT1G32370.1  protein_id AT1G32370.1p  transcript_id AT1G32370.1  
At1g32375	chr1:011679230	0.0	W/11679230-11680084,11680169-11680303,11680401-11680679	AT1G32375.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G56390.1); Has 1338 Blast hits to 1299 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1337; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32375.1p  transcript_id AT1G32375.1  protein_id AT1G32375.1p  transcript_id AT1G32375.1  
At1g32380	chr1:011682033	0.0	W/11682033-11682176,11682589-11682753,11682840-11683088,11683168-11683311,11683399-11683566,11683644-11683713,11683877-11683958,11684049-11684229	AT1G32380.1  CDS  gene_syn F5D14.15, F5D14_15  go_component chloroplast|GO:0009507||IEA  go_process nucleoside metabolic process|GO:0009116||IEA  go_process ribonucleoside monophosphate biosynthetic process|GO:0009156||IEA  go_process nucleotide biosynthetic process|GO:0009165||IEA  go_process cellular biosynthetic process|GO:0044249||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function ribose phosphate diphosphokinase activity|GO:0004749||IEA  go_process nucleotide biosynthetic process|GO:0009165||ISS  go_function ribose phosphate diphosphokinase activity|GO:0004749||ISS  product ribose-phosphate pyrophosphokinase 2 / phosphoribosyl diphosphate synthetase 2 (PRS2)  note ribose-phosphate pyrophosphokinase 2 / phosphoribosyl diphosphate synthetase 2 (PRS2); FUNCTIONS IN: magnesium ion binding, ribose phosphate diphosphokinase activity; INVOLVED IN: cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836), Phosphoribosyl pyrophosphokinase (InterPro:IPR005946), Phosphoribosyl pyrophosphate synthetase, conserved site (InterPro:IPR000842); BEST Arabidopsis thaliana protein match is: ribose-phosphate pyrophosphokinase 1 / phosphoribosyl diphosphate synthetase 1 (PRSI) (TAIR:AT2G35390.2); Has 8056 Blast hits to 7889 proteins in 1556 species: Archae - 182; Bacteria - 3337; Metazoa - 501; Fungi - 457; Plants - 129; Viruses - 7; Other Eukaryotes - 3443 (source: NCBI BLink).  protein_id AT1G32380.1p  transcript_id AT1G32380.1  protein_id AT1G32380.1p  transcript_id AT1G32380.1  
At1g32385	chr1:011685060	0.0	W/11685060-11685144	AT1G32385.1  snoRNA  gene_syn 52178.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT1G32385.1  
At1g32390	chr1:011688129	0.0	W/11688129-11688707	AT1G32390.1  mRNA_TE_gene  pseudo  gene_syn F5D14.16, F5D14_16  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G11710.1); similar to hypothetical protein 23.t00046 [Brassica oleracea] (GB:ABD65629.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446)  
At1g32400	chr1:011690635	0.0	C/11690635-11690873,11690429-11690528,11690182-11690262,11689949-11690053,11689585-11689794,11689393-11689500	AT1G32400.1  CDS  gene_syn F5D14.17, F5D14_17, TOBAMOVIRUS MULTIPLICATION 2A, TOM2A  gene TOM2A  function TOM2A encodes a 280 amino acid putative four-pass transmembrane protein with a C-terminal farnesylation signal, essential for efficient multiplication of tobacco mosaic viruses.  go_component vacuole|GO:0005773|15539469|IDA  go_component membrane|GO:0016020|12514139|ISS  go_process viral replication complex formation and maintenance|GO:0046786|12514139|IMP  go_function protein binding|GO:0005515|12514139|IPI  product TOM2A (TOBAMOVIRUS MULTIPLICATION 2A); protein binding  note TOBAMOVIRUS MULTIPLICATION 2A (TOM2A); FUNCTIONS IN: protein binding; INVOLVED IN: viral replication complex formation and maintenance; LOCATED IN: vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28770.1); Has 712 Blast hits to 709 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 581; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT1G32400.1p  transcript_id AT1G32400.1  protein_id AT1G32400.1p  transcript_id AT1G32400.1  
At1g32400	chr1:011690635	0.0	C/11690635-11690873,11690429-11690528,11690182-11690262,11689949-11690053,11689585-11689794,11689393-11689500	AT1G32400.2  CDS  gene_syn F5D14.17, F5D14_17, TOBAMOVIRUS MULTIPLICATION 2A, TOM2A  gene TOM2A  function TOM2A encodes a 280 amino acid putative four-pass transmembrane protein with a C-terminal farnesylation signal, essential for efficient multiplication of tobacco mosaic viruses.  go_component vacuole|GO:0005773|15539469|IDA  go_component membrane|GO:0016020|12514139|ISS  go_process viral replication complex formation and maintenance|GO:0046786|12514139|IMP  go_function protein binding|GO:0005515|12514139|IPI  product TOM2A (TOBAMOVIRUS MULTIPLICATION 2A); protein binding  note TOBAMOVIRUS MULTIPLICATION 2A (TOM2A); FUNCTIONS IN: protein binding; INVOLVED IN: viral replication complex formation and maintenance; LOCATED IN: vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28770.1); Has 712 Blast hits to 709 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 581; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT1G32400.2p  transcript_id AT1G32400.2  protein_id AT1G32400.2p  transcript_id AT1G32400.2  
At1g32400	chr1:011690635	0.0	C/11690635-11690873,11690429-11690528,11690182-11690262,11689949-11690053,11689585-11689794,11689393-11689500	AT1G32400.3  CDS  gene_syn F5D14.17, F5D14_17, TOBAMOVIRUS MULTIPLICATION 2A, TOM2A  gene TOM2A  function TOM2A encodes a 280 amino acid putative four-pass transmembrane protein with a C-terminal farnesylation signal, essential for efficient multiplication of tobacco mosaic viruses.  go_component vacuole|GO:0005773|15539469|IDA  go_component membrane|GO:0016020|12514139|ISS  go_process viral replication complex formation and maintenance|GO:0046786|12514139|IMP  go_function protein binding|GO:0005515|12514139|IPI  product TOM2A (TOBAMOVIRUS MULTIPLICATION 2A); protein binding  note TOBAMOVIRUS MULTIPLICATION 2A (TOM2A); FUNCTIONS IN: protein binding; INVOLVED IN: viral replication complex formation and maintenance; LOCATED IN: vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28770.1); Has 712 Blast hits to 709 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 581; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT1G32400.3p  transcript_id AT1G32400.3  protein_id AT1G32400.3p  transcript_id AT1G32400.3  
At1g32410	chr1:011694398	0.0	W/11694398-11694496,11694606-11694645,11694857-11694941,11695099-11695297	AT1G32410.1  CDS  gene_syn F5D14.32  go_component vacuole|GO:0005773|15539469|IDA  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product vacuolar protein sorting 55 family protein / VPS55 family protein  note vacuolar protein sorting 55 family protein / VPS55 family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting 55 (InterPro:IPR007262); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting 55 family protein / VPS55 family protein (TAIR:AT3G11530.2); Has 303 Blast hits to 303 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 147; Fungi - 86; Plants - 47; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G32410.1p  transcript_id AT1G32410.1  protein_id AT1G32410.1p  transcript_id AT1G32410.1  
At1g32410	chr1:011694398	0.0	W/11694398-11694496,11694606-11694645,11694857-11694941,11695099-11695297	AT1G32410.2  CDS  gene_syn F5D14.32  go_component vacuole|GO:0005773|15539469|IDA  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product vacuolar protein sorting 55 family protein / VPS55 family protein  note vacuolar protein sorting 55 family protein / VPS55 family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting 55 (InterPro:IPR007262); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting 55 family protein / VPS55 family protein (TAIR:AT3G11530.2); Has 303 Blast hits to 303 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 147; Fungi - 86; Plants - 47; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G32410.2p  transcript_id AT1G32410.2  protein_id AT1G32410.2p  transcript_id AT1G32410.2  
At1g32410	chr1:011694398	0.0	W/11694398-11694496,11694606-11694645,11694857-11694941,11695099-11695297	AT1G32410.3  CDS  gene_syn F5D14.32  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product vacuolar protein sorting 55 family protein / VPS55 family protein  note vacuolar protein sorting 55 family protein / VPS55 family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting 55 (InterPro:IPR007262); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting 55 family protein / VPS55 family protein (TAIR:AT3G11530.2); Has 303 Blast hits to 303 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 147; Fungi - 86; Plants - 47; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G32410.3p  transcript_id AT1G32410.3  protein_id AT1G32410.3p  transcript_id AT1G32410.3  
At1g32410	chr1:011694398	0.0	W/11694398-11694496,11694606-11694645,11694857-11694941,11695099-11695297	AT1G32410.4  CDS  gene_syn F5D14.32  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product vacuolar protein sorting 55 family protein / VPS55 family protein  note vacuolar protein sorting 55 family protein / VPS55 family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting 55 (InterPro:IPR007262); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting 55 family protein / VPS55 family protein (TAIR:AT3G11530.2); Has 303 Blast hits to 303 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 147; Fungi - 86; Plants - 47; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G32410.4p  transcript_id AT1G32410.4  protein_id AT1G32410.4p  transcript_id AT1G32410.4  
At1g32410	chr1:011694398	0.0	W/11694398-11694496,11694606-11694645,11694857-11694941,11695099-11695297	AT1G32410.5  CDS  gene_syn F5D14.32  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product vacuolar protein sorting 55 family protein / VPS55 family protein  note vacuolar protein sorting 55 family protein / VPS55 family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting 55 (InterPro:IPR007262); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting 55 family protein / VPS55 family protein (TAIR:AT3G11530.2); Has 303 Blast hits to 303 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 147; Fungi - 86; Plants - 47; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G32410.5p  transcript_id AT1G32410.5  protein_id AT1G32410.5p  transcript_id AT1G32410.5  
At1g32415	chr1:011695611	0.0	W/11695611-11697896	AT1G32415.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G53600.1); Has 18393 Blast hits to 5266 proteins in 142 species: Archae - 0; Bacteria - 4; Metazoa - 83; Fungi - 74; Plants - 17819; Viruses - 0; Other Eukaryotes - 413 (source: NCBI BLink).  protein_id AT1G32415.1p  transcript_id AT1G32415.1  protein_id AT1G32415.1p  transcript_id AT1G32415.1  
At1g32420	chr1:011701995	0.0	W/11701995-11702903	AT1G32420.1  CDS  gene_syn F5D14.20, F5D14_20  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G50220.1); Has 997 Blast hits to 983 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 995; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G32420.1p  transcript_id AT1G32420.1  protein_id AT1G32420.1p  transcript_id AT1G32420.1  
At1g32430	chr1:011705713	0.0	C/11705713-11706325,11705177-11705625,11704932-11705012	AT1G32430.1  CDS  gene_syn F5D14.21, F5D14_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G47390.1); Has 543 Blast hits to 537 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 543; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32430.1p  transcript_id AT1G32430.1  protein_id AT1G32430.1p  transcript_id AT1G32430.1  
At1g32440	chr1:011712205	0.0	W/11712205-11712435,11712590-11712856,11712939-11713104,11713195-11713329,11713427-11713537,11713625-11713713,11713801-11713863,11713945-11714120,11714219-11714318,11714405-11714553,11714653-11714761,11714844-11714963	AT1G32440.1  CDS  gene_syn F5D14.22, F5D14_22, F5F19.10, F5F19_10, PKp3, plastidial pyruvate kinase 3  gene PKp3  function encodes a chloroplast pyruvate kinase beta subunit. The enzyme is less active than the other chloroplast pyruvate kinase beta subunit encoded by AT5G52920. Involved in seed oil biosynthesis. Can partially complement the AT5G52920 mutant.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|17557808|IDA  go_process glycolysis|GO:0006096||ISS  go_process fatty acid biosynthetic process|GO:0006633|17557808|IGI  go_function pyruvate kinase activity|GO:0004743|17557808|IDA  go_function pyruvate kinase activity|GO:0004743||ISS  product PKp3 (plastidial pyruvate kinase 3); pyruvate kinase  note plastidial pyruvate kinase 3 (PKp3); FUNCTIONS IN: pyruvate kinase activity; INVOLVED IN: glycolysis, fatty acid biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate kinase, C-terminal-like (InterPro:IPR015795), Pyruvate kinase, active site (InterPro:IPR018209), Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), Pyruvate kinase, alpha/beta (InterPro:IPR015794), Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate kinase (InterPro:IPR001697), Pyruvate kinase, barrel (InterPro:IPR015793); BEST Arabidopsis thaliana protein match is: PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1); pyruvate kinase (TAIR:AT5G52920.1); Has 6925 Blast hits to 6881 proteins in 1514 species: Archae - 102; Bacteria - 3217; Metazoa - 483; Fungi - 168; Plants - 279; Viruses - 0; Other Eukaryotes - 2676 (source: NCBI BLink).  protein_id AT1G32440.1p  transcript_id AT1G32440.1  protein_id AT1G32440.1p  transcript_id AT1G32440.1  
At1g32450	chr1:011719778	0.0	C/11719778-11719807,11718958-11719072,11717085-11717302,11716420-11716991,11715842-11716340,11715337-11715747	AT1G32450.1  CDS  gene_syn F5D14.23, F5D14_23, NITRATE TRANSPORTER 1.5, NRT1.5  gene NRT1.5  function Transmembrane nitrate transporter. Involved in xylem transport of nitrate from root to shoot. Induced in response to nitrate. Not involved in nitrate uptake. expressed in root pericycle cells.  go_component plasma membrane|GO:0005886|18780802|IDA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_process response to nitrate|GO:0010167|18780802|IEP  go_process nitrate transport|GO:0015706|18780802|IMP  go_process nitrate assimilation|GO:0042128|18780802|IMP  go_function transporter activity|GO:0005215||ISS  go_function nitrate transmembrane transporter activity|GO:0015112|18780802|IDA  product NRT1.5 (NITRATE TRANSPORTER 1.5); nitrate transmembrane transporter/ transporter  note NITRATE TRANSPORTER 1.5 (NRT1.5); FUNCTIONS IN: transporter activity, nitrate transmembrane transporter activity; INVOLVED IN: nitrate assimilation, nitrate transport, oligopeptide transport, response to nitrate; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT4G21680.1); Has 4576 Blast hits to 4303 proteins in 789 species: Archae - 0; Bacteria - 2015; Metazoa - 625; Fungi - 283; Plants - 1136; Viruses - 0; Other Eukaryotes - 517 (source: NCBI BLink).  protein_id AT1G32450.1p  transcript_id AT1G32450.1  protein_id AT1G32450.1p  transcript_id AT1G32450.1  
At1g32460	chr1:011738859	0.0	W/11738859-11739137	AT1G32460.1  CDS  gene_syn F5D14.24, F5D14_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 12 Blast hits to 12 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32460.1p  transcript_id AT1G32460.1  protein_id AT1G32460.1p  transcript_id AT1G32460.1  
At1g32470	chr1:011740135	0.0	C/11740135-11740246,11739950-11740038,11739690-11739860,11739479-11739607	AT1G32470.1  CDS  gene_syn F5D14.25, F5D14_25  go_component mitochondrion|GO:0005739|18385124|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process glycine catabolic process|GO:0006546||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component glycine cleavage complex|GO:0005960||ISS  go_process glycine catabolic process|GO:0006546||ISS  go_function glycine dehydrogenase (decarboxylating) activity|GO:0004375||ISS  product glycine cleavage system H protein, mitochondrial, putative  note glycine cleavage system H protein, mitochondrial, putative; FUNCTIONS IN: glycine dehydrogenase (decarboxylating) activity; INVOLVED IN: glycine catabolic process; LOCATED IN: mitochondrion, glycine cleavage complex, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), Single hybrid motif (InterPro:IPR011053), Glycine cleavage H-protein (InterPro:IPR002930), Glycine cleavage H-protein, subgroup (InterPro:IPR017453); BEST Arabidopsis thaliana protein match is: GDCH; glycine dehydrogenase (decarboxylating) (TAIR:AT2G35370.1); Has 4756 Blast hits to 4756 proteins in 1228 species: Archae - 82; Bacteria - 2411; Metazoa - 143; Fungi - 84; Plants - 158; Viruses - 0; Other Eukaryotes - 1878 (source: NCBI BLink).  protein_id AT1G32470.1p  transcript_id AT1G32470.1  protein_id AT1G32470.1p  transcript_id AT1G32470.1  
At1g32480	chr1:011741083	0.0	W/11741083-11741727	AT1G32480.1  CDS  gene_syn F5D14.26, F5D14_26  go_process metabolic process|GO:0008152||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_process metabolic process|GO:0008152||ISS  go_function oxidoreductase activity|GO:0016491||ISS  product oxidoreductase/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor  note oxidoreductase/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor; FUNCTIONS IN: oxidoreductase activity, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804); BEST Arabidopsis thaliana protein match is: IDH1 (ISOCITRATE DEHYDROGENASE 1); isocitrate dehydrogenase (NAD+)/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor (TAIR:AT4G35260.1); Has 8592 Blast hits to 8592 proteins in 1454 species: Archae - 244; Bacteria - 4774; Metazoa - 498; Fungi - 355; Plants - 150; Viruses - 0; Other Eukaryotes - 2571 (source: NCBI BLink).  protein_id AT1G32480.1p  transcript_id AT1G32480.1  protein_id AT1G32480.1p  transcript_id AT1G32480.1  
At1g32490	chr1:011749190	0.0	C/11749190-11749286,11748973-11749103,11748621-11748815,11748453-11748518,11748224-11748310,11747857-11747890,11747680-11747734,11747318-11747377,11747155-11747226,11746863-11746926,11746684-11746763,11746486-11746553,11746323-11746377,11746119-11746176,11745961-11746032,11745713-11745781,11745306-11745395,11744921-11745007,11744710-11744825,11744561-11744627,11743425-11744465,11743269-11743331,11743066-11743189,11742870-11742970,11742710-11742772,11742503-11742575,11742356-11742402	AT1G32490.1  CDS  gene_syn EMB2733, EMBRYO DEFECTIVE 2733, ENHANCED SILENCING PHENOTYPE 3, ESP3, F5D14.27, F5D14_27  gene ESP3  function Encodes a homolog of the yeast PRP2 protein, one of four related DEAH RNA helicases identified as essential cofactors for RNA splicing.  go_component endomembrane system|GO:0012505||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_process RNA splicing|GO:0008380|16807317|NAS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process posttranscriptional gene silencing by RNA|GO:0035194|17008405|IMP  go_function ATP-dependent RNA helicase activity|GO:0004004||ISS  product ESP3 (ENHANCED SILENCING PHENOTYPE 3); ATP binding / ATP-dependent RNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding  note ENHANCED SILENCING PHENOTYPE 3 (ESP3); FUNCTIONS IN: helicase activity, ATP-dependent RNA helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; INVOLVED IN: embryonic development ending in seed dormancy, posttranscriptional gene silencing by RNA, RNA splicing; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated region (InterPro:IPR007502), Region of unknown function DUF1605 (InterPro:IPR011709), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: MEE29 (maternal effect embryo arrest 29); ATP binding / ATP-dependent RNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding (TAIR:AT2G35340.1); Has 29596 Blast hits to 21130 proteins in 1458 species: Archae - 57; Bacteria - 3417; Metazoa - 11853; Fungi - 2557; Plants - 1060; Viruses - 1271; Other Eukaryotes - 9381 (source: NCBI BLink).  protein_id AT1G32490.1p  transcript_id AT1G32490.1  protein_id AT1G32490.1p  transcript_id AT1G32490.1  
At1g32500	chr1:011751122	0.0	C/11751122-11751994,11750450-11750709,11750091-11750385	AT1G32500.1  CDS  gene_syn ATNAP6, F5D14.28, F5D14_28, NON-INTRINSIC ABC PROTEIN 6  gene ATNAP6  function Encodes a member of a heterogenous group of non-intrinsic ATP-binding cassette (ABC) proteins. Members of this group bear no close resemblance to each other nor to representatives of specific ABC protein subfamilies from other organisms. This grouping is arbitrary and will likely change upon acquisition of further data.  go_component chloroplast|GO:0009507|15184673|IDA  go_component plastid|GO:0009536|15710401|IDA  go_process transport|GO:0006810|11346655|ISS  go_process embryonic development ending in seed dormancy|GO:0009793|15710401|IMP  go_process thylakoid membrane organization|GO:0010027|15710401|IMP  go_process iron-sulfur cluster assembly|GO:0016226|15184673|IDA  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  go_function protein binding|GO:0005515|15184673|IPI  product ATNAP6 (NON-INTRINSIC ABC PROTEIN 6); protein binding / transporter  note NON-INTRINSIC ABC PROTEIN 6 (ATNAP6); FUNCTIONS IN: protein binding, transporter activity; INVOLVED IN: embryonic development ending in seed dormancy, transport, iron-sulfur cluster assembly, thylakoid membrane organization; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SUF system FeS cluster assembly, SufBD (InterPro:IPR000825); BEST Arabidopsis thaliana protein match is: ATABC1 (ATP BINDING CASSETTE PROTEIN 1); ATPase, coupled to transmembrane movement of substances / protein binding / transporter (TAIR:AT4G04770.1); Has 6383 Blast hits to 6383 proteins in 903 species: Archae - 143; Bacteria - 3011; Metazoa - 1; Fungi - 6; Plants - 57; Viruses - 0; Other Eukaryotes - 3165 (source: NCBI BLink).  protein_id AT1G32500.1p  transcript_id AT1G32500.1  protein_id AT1G32500.1p  transcript_id AT1G32500.1  
At1g32505	chr1:011753254	0.0	W/11753254-11754123	AT1G32505.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family  
At1g32510	chr1:011757000	0.0	W/11757000-11757156,11757232-11757533,11757637-11757840,11757930-11758118	AT1G32510.1  CDS  gene_syn Arabidopsis NAC domain containing protein 11, F5D14.30, F5D14_30, anac011  gene anac011  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac011 (Arabidopsis NAC domain containing protein 11); transcription factor  note Arabidopsis NAC domain containing protein 11 (anac011); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac071 (Arabidopsis NAC domain containing protein 71); transcription factor (TAIR:AT4G17980.1); Has 1546 Blast hits to 1544 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1546; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32510.1p  transcript_id AT1G32510.1  protein_id AT1G32510.1p  transcript_id AT1G32510.1  
At1g32520	chr1:011759074	0.0	C/11759074-11759272,11758422-11758942	AT1G32520.1  CDS  gene_syn F5D14.31, F5D14_31  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 77 Blast hits to 77 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 41; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G32520.1p  transcript_id AT1G32520.1  protein_id AT1G32520.1p  transcript_id AT1G32520.1  
At1g32530	chr1:011760767	0.0	C/11760767-11762386,11759666-11760181	AT1G32530.1  CDS  gene_syn F5D14.34  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT2G35330.1); Has 33581 Blast hits to 21216 proteins in 1196 species: Archae - 227; Bacteria - 3237; Metazoa - 17526; Fungi - 2016; Plants - 985; Viruses - 132; Other Eukaryotes - 9458 (source: NCBI BLink).  protein_id AT1G32530.1p  transcript_id AT1G32530.1  protein_id AT1G32530.1p  transcript_id AT1G32530.1  
At1g32540	chr1:011768043	0.0	W/11768043-11768121,11768431-11768553,11768641-11768754,11769298-11769407,11769553-11769591	AT1G32540.2  CDS  gene_syn LOL1, LSD ONE LIKE 1, T9G5.1, T9G5_1  gene LOL1  function Encodes a protein with 3 plant-specific zinc finger domains that acts as a positive regulator of cell death.  go_process induction of apoptosis|GO:0006917|12732715|IMP  go_function DNA binding|GO:0003677|12732715|ISS  product LOL1 (LSD ONE LIKE 1); DNA binding  note LSD ONE LIKE 1 (LOL1); FUNCTIONS IN: DNA binding; INVOLVED IN: induction of apoptosis; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: zinc finger protein (LSD1) (TAIR:AT4G20380.7); Has 168 Blast hits to 133 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 123; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT1G32540.2p  transcript_id AT1G32540.2  protein_id AT1G32540.2p  transcript_id AT1G32540.2  
At1g32540	chr1:011768043	0.0	W/11768043-11768121,11768431-11768553,11768641-11768754,11769298-11769407,11769553-11769591	AT1G32540.3  CDS  gene_syn LOL1, LSD ONE LIKE 1, T9G5.1, T9G5_1  gene LOL1  function Encodes a protein with 3 plant-specific zinc finger domains that acts as a positive regulator of cell death.  go_process induction of apoptosis|GO:0006917|12732715|IMP  go_function DNA binding|GO:0003677|12732715|ISS  product LOL1 (LSD ONE LIKE 1); DNA binding  note LSD ONE LIKE 1 (LOL1); FUNCTIONS IN: DNA binding; INVOLVED IN: induction of apoptosis; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: zinc finger protein (LSD1) (TAIR:AT4G20380.7); Has 168 Blast hits to 133 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 123; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT1G32540.3p  transcript_id AT1G32540.3  protein_id AT1G32540.3p  transcript_id AT1G32540.3  
At1g32540	chr1:011768253	0.0	W/11768253-11768553,11768641-11768754,11769298-11769407,11769553-11769591	AT1G32540.1  CDS  gene_syn LOL1, LSD ONE LIKE 1, T9G5.1, T9G5_1  gene LOL1  function Encodes a protein with 3 plant-specific zinc finger domains that acts as a positive regulator of cell death.  go_component endomembrane system|GO:0012505||IEA  go_process induction of apoptosis|GO:0006917|12732715|IMP  go_function DNA binding|GO:0003677|12732715|ISS  product LOL1 (LSD ONE LIKE 1); DNA binding  note LSD ONE LIKE 1 (LOL1); FUNCTIONS IN: DNA binding; INVOLVED IN: induction of apoptosis; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: zinc finger protein (LSD1) (TAIR:AT4G20380.7); Has 181 Blast hits to 129 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT1G32540.1p  transcript_id AT1G32540.1  protein_id AT1G32540.1p  transcript_id AT1G32540.1  
At1g32550	chr1:011773884	0.0	C/11773884-11774117,11773467-11773530,11773119-11773207,11772600-11772668,11772444-11772488,11771969-11772013	AT1G32550.1  CDS  gene_syn T9G5.4, T9G5_4  go_process electron transport chain|GO:0022900||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function iron-sulfur cluster binding|GO:0051536||IEA  go_function 2 iron, 2 sulfur cluster binding|GO:0051537||IEA  go_function electron carrier activity|GO:0009055||ISS  product ferredoxin family protein  note ferredoxin family protein; FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding; INVOLVED IN: electron transport chain; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041), Ferredoxin [2Fe-2S], plant (InterPro:IPR010241), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: ATFD1 (FERREDOXIN 1); 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding (TAIR:AT1G10960.1); Has 3593 Blast hits to 3591 proteins in 713 species: Archae - 61; Bacteria - 2141; Metazoa - 8; Fungi - 1; Plants - 441; Viruses - 2; Other Eukaryotes - 939 (source: NCBI BLink).  protein_id AT1G32550.1p  transcript_id AT1G32550.1  protein_id AT1G32550.1p  transcript_id AT1G32550.1  
At1g32550	chr1:011773893	0.0	C/11773893-11774117,11773467-11773530,11773119-11773207,11772868-11772915,11772600-11772668,11772444-11772488,11771969-11772013	AT1G32550.2  CDS  gene_syn T9G5.4, T9G5_4  go_function electron carrier activity|GO:0009055||IEA  go_function iron-sulfur cluster binding|GO:0051536||IEA  go_function electron carrier activity|GO:0009055||ISS  product ferredoxin family protein  note ferredoxin family protein; FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: ATFD1 (FERREDOXIN 1); 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding (TAIR:AT1G10960.1).  protein_id AT1G32550.2p  transcript_id AT1G32550.2  protein_id AT1G32550.2p  transcript_id AT1G32550.2  
At1g32560	chr1:011774528	0.0	W/11774528-11774614,11774715-11775032	AT1G32560.1  CDS  gene_syn T9G5.2, T9G5_2  go_process embryonic development|GO:0009790||IEA  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||ISS  go_function molecular_function|GO:0003674||ND  product late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein  note late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy, embryonic development; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant (LEA) group 1 (InterPro:IPR005513); BEST Arabidopsis thaliana protein match is: late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein (TAIR:AT2G35300.1); Has 190 Blast hits to 190 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 41; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G32560.1p  transcript_id AT1G32560.1  protein_id AT1G32560.1p  transcript_id AT1G32560.1  
At1g32570	chr1:011777301	0.0	W/11777301-11777428,11777518-11777557	AT1G32570.1  CDS  gene_syn T9G5.6, T9G5_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32570.1p  transcript_id AT1G32570.1  protein_id AT1G32570.1p  transcript_id AT1G32570.1  
At1g32570	chr1:011777301	0.0	W/11777301-11777428,11777518-11777557	AT1G32570.2  CDS  gene_syn T9G5.6, T9G5_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32570.2p  transcript_id AT1G32570.2  protein_id AT1G32570.2p  transcript_id AT1G32570.2  
At1g32580	chr1:011784108	0.0	W/11784108-11784487,11784578-11784675,11784758-11784823,11785285-11785430	AT1G32580.1  CDS  gene_syn T9G5.3, T9G5_3  go_component mitochondrion|GO:0005739|11743114|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product plastid developmental protein DAG, putative  note plastid developmental protein DAG, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: plastid developmental protein DAG, putative (TAIR:AT2G35240.1); Has 151 Blast hits to 138 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32580.1p  transcript_id AT1G32580.1  protein_id AT1G32580.1p  transcript_id AT1G32580.1  
At1g32582	chr1:011785936	0.0	W/11785936-11786037	AT1G32582.1  miRNA  gene_syn MICRORNA400, MIR400  gene MIR400  function Encodes a microRNA of unknown function that is predicted to target PPR family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UAUGAGAGUAUUAUAAGUCAC  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR400 (MICRORNA400); miRNA  transcript_id AT1G32582.1  
At1g32583	chr1:011787351	0.0	W/11787351-11787429,11787526-11787648,11787766-11788103	AT1G32583.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: TPD1 (TAPETUM DETERMINANT 1) (TAIR:AT4G24972.1); Has 78 Blast hits to 76 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32583.1p  transcript_id AT1G32583.1  protein_id AT1G32583.1p  transcript_id AT1G32583.1  
At1g32585	chr1:011788515	0.0	C/11788515-11789177	AT1G32585.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product VQ motif-containing protein-related  note VQ motif-containing protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT2G35230.1); Has 20 Blast hits to 20 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32585.1p  transcript_id AT1G32585.1  protein_id AT1G32585.1p  transcript_id AT1G32585.1  
At1g32590	chr1:011789768	0.0	W/11789768-11793772	AT1G32590.1  mRNA_TE_gene  pseudo  gene_syn T9G5.7, T9G5_7  note Transposable element gene, copia-like retrotransposon family, has a 1.2e-230 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At1g32600	chr1:011794802	0.0	W/11794802-11795683	AT1G32600.1  CDS  gene_syn F6N18.20, F6N18_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein-related (TAIR:AT1G54640.1); Has 400 Blast hits to 398 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 400; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32600.1p  transcript_id AT1G32600.1  protein_id AT1G32600.1p  transcript_id AT1G32600.1  
At1g32610	chr1:011795892	0.0	C/11795892-11796767	AT1G32610.1  CDS  gene_syn F6N18.2, F6N18_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT2G35230.1); Has 422 Blast hits to 415 proteins in 101 species: Archae - 0; Bacteria - 2; Metazoa - 174; Fungi - 104; Plants - 79; Viruses - 9; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT1G32610.1p  transcript_id AT1G32610.1  protein_id AT1G32610.1p  transcript_id AT1G32610.1  
At1g32610	chr1:011795892	0.0	C/11795892-11796767	AT1G32610.2  CDS  gene_syn F6N18.2, F6N18_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT2G35230.1); Has 422 Blast hits to 415 proteins in 101 species: Archae - 0; Bacteria - 2; Metazoa - 174; Fungi - 104; Plants - 79; Viruses - 9; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT1G32610.2p  transcript_id AT1G32610.2  protein_id AT1G32610.2p  transcript_id AT1G32610.2  
At1g32620	chr1:011797248	0.0	C/11797248-11797285	AT1G32620.1  tRNA  gene_syn 51766.TRNA-MET-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Met (anticodon: CAT)  transcript_id AT1G32620.1  
At1g32630	chr1:011797942	0.0	W/11797942-11798343	AT1G32630.1  CDS  gene_syn F6N18.3, F6N18_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 10 Blast hits to 10 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 4; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G32630.1p  transcript_id AT1G32630.1  protein_id AT1G32630.1p  transcript_id AT1G32630.1  
At1g32640	chr1:011799042	0.0	C/11799042-11800913	AT1G32640.1  CDS  gene_syn ATMYC2, F6N18.4, F6N18_4, JAI1, JASMONATE INSENSITIVE 1, JIN1, MYC2, RD22BP1, ZBF1  gene MYC2  function Encodes a MYC-related transcriptional activator with a typical DNA binding domain of a basic helix-loop-helix leucine zipper motif. Binds to an extended G-Box promoter motif. Its transcription is induced by dehydration stress and ABA treatment. Negative regulator of blue light mediated photomorphogenic growth and blue and far-red-light regulated gene expression. Positive regulator of lateral root formation. Regulates diverse JA-dependent functions. Negatively regulates Trp metabolism and biosynthesis of Trp-derived secondary metabolites. Positively regulates flavonoid biosynthesis, resistance to insects, and response to oxidative stress. Regulates other transcription factors, and negatively regulates its own expression.  go_component nucleus|GO:0005634||IEA  go_process defense response to insect|GO:0002213|17616737|IMP  go_process tryptophan metabolic process|GO:0006568|17616737|IEP  go_process tryptophan metabolic process|GO:0006568|17616737|IMP  go_process response to desiccation|GO:0009269|9368419|IEP  go_process response to wounding|GO:0009611|17675405|IEP  go_process response to wounding|GO:0009611|9680973|TAS  go_process response to abscisic acid stimulus|GO:0009737|9368419|IEP  go_process indole glucosinolate biosynthetic process|GO:0009759|17616737|IEP  go_process indole glucosinolate biosynthetic process|GO:0009759|17616737|IMP  go_process jasmonic acid mediated signaling pathway|GO:0009867||IMP  go_process positive regulation of flavonoid biosynthetic process|GO:0009963|17616737|IEP  go_process response to chitin|GO:0010200|17722694|IEP  go_process regulation of transcription from RNA polymerase II promoter in response to oxidative stress|GO:0043619|17616737|IMP  go_process positive regulation of transcription|GO:0045941|9368419|IDA  go_process root development|GO:0048364|17616737|IMP  go_process regulation of transcription factor activity|GO:0051090|17616737|IMP  go_function DNA binding|GO:0003677|9368419|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription activator activity|GO:0016563|9368419|IDA  product MYC2; DNA binding / transcription activator/ transcription factor  note MYC2; FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: in 13 processes; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT4G17880.1); Has 2534 Blast hits to 2369 proteins in 591 species: Archae - 2; Bacteria - 2; Metazoa - 689; Fungi - 71; Plants - 1719; Viruses - 25; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G32640.1p  transcript_id AT1G32640.1  protein_id AT1G32640.1p  transcript_id AT1G32640.1  
At1g32650	chr1:011810557	0.0	C/11810557-11810631	AT1G32650.1  CDS  gene_syn F6N18.22, F6N18_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G32650.1p  transcript_id AT1G32650.1  protein_id AT1G32650.1p  transcript_id AT1G32650.1  
At1g32660	chr1:011811040	0.0	W/11811040-11812380	AT1G32660.1  CDS  gene_syn F6N18.5, F6N18_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G30790.1); Has 695 Blast hits to 669 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 695; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32660.1p  transcript_id AT1G32660.1  protein_id AT1G32660.1p  transcript_id AT1G32660.1  
At1g32670	chr1:011815664	0.0	W/11815664-11815719,11815898-11815976	AT1G32670.1  CDS  gene_syn F6N18.7, F6N18_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32670.1p  transcript_id AT1G32670.1  protein_id AT1G32670.1p  transcript_id AT1G32670.1  
At1g32680	chr1:011818034	0.0	W/11818034-11818279	AT1G32680.1  mRNA_TE_gene  pseudo  gene_syn F6N18.21, F6N18_21  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35880.1)  
At1g32690	chr1:011821079	0.0	C/11821079-11821681	AT1G32690.1  CDS  gene_syn F6N18.23, F6N18_23  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35200.1); Has 31 Blast hits to 31 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32690.1p  transcript_id AT1G32690.1  protein_id AT1G32690.1p  transcript_id AT1G32690.1  
At1g32700	chr1:011827588	0.0	W/11827588-11827590,11827872-11828063,11828269-11828484,11829214-11829444	AT1G32700.1  CDS  gene_syn F6N18.8, F6N18_8  go_function binding|GO:0005488||ISS  product zinc-binding family protein  note zinc-binding family protein; FUNCTIONS IN: binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734); BEST Arabidopsis thaliana protein match is: zinc-binding family protein (TAIR:AT4G17900.1); Has 193 Blast hits to 193 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 193; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32700.1p  transcript_id AT1G32700.1  protein_id AT1G32700.1p  transcript_id AT1G32700.1  
At1g32700	chr1:011827986	0.0	W/11827986-11828063,11828269-11828484,11829214-11829444	AT1G32700.2  CDS  gene_syn F6N18.8, F6N18_8  go_function binding|GO:0005488||ISS  product zinc-binding family protein  note zinc-binding family protein; FUNCTIONS IN: binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734); BEST Arabidopsis thaliana protein match is: zinc-binding family protein (TAIR:AT4G17900.2); Has 191 Blast hits to 191 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 191; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32700.2p  transcript_id AT1G32700.2  protein_id AT1G32700.2p  transcript_id AT1G32700.2  
At1g32710	chr1:011833113	0.0	W/11833113-11833360,11833448-11833543,11833646-11833706	AT1G32710.1  CDS  gene_syn F6N18.10, F6N18_10  go_component mitochondrion|GO:0005739||IEA  go_function cytochrome-c oxidase activity|GO:0004129||IEA  go_component mitochondrion|GO:0005739||ISS  go_function cytochrome-c oxidase activity|GO:0004129||ISS  product cytochrome c oxidase subunit VIb family  note cytochrome c oxidase subunit VIb family; FUNCTIONS IN: cytochrome-c oxidase activity; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase, subunit VIb (InterPro:IPR003213); BEST Arabidopsis thaliana protein match is: COX6B (CYTOCHROME C OXIDASE 6B); cytochrome-c oxidase (TAIR:AT1G22450.1); Has 282 Blast hits to 282 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 119; Fungi - 74; Plants - 84; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G32710.1p  transcript_id AT1G32710.1  protein_id AT1G32710.1p  transcript_id AT1G32710.1  
At1g32713	chr1:011834068	0.0	C/11834068-11834180	AT1G32713.1  miRNA  gene_syn MICRORNA829A, MIR829A  gene MIR829A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: CAAAUUAAAGCUUCAAGGUAG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR829A (MICRORNA829A); miRNA  transcript_id AT1G32713.1  
At1g32720	chr1:011834902	0.0	W/11834902-11834963,11835092-11835124,11835219-11835397,11836173-11836222,11836404-11836631	AT1G32720.1  CDS  gene_syn F6N18.19, F6N18_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29620.1); Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32720.1p  transcript_id AT1G32720.1  protein_id AT1G32720.1p  transcript_id AT1G32720.1  
At1g32730	chr1:011841077	0.0	W/11841077-11841198,11841492-11841553,11841837-11841924,11842143-11842245,11842348-11842956	AT1G32730.1  CDS  gene_syn F6N18.11, F6N18_11  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; Has 87 Blast hits to 85 proteins in 30 species: Archae - 0; Bacteria - 7; Metazoa - 51; Fungi - 4; Plants - 13; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G32730.1p  transcript_id AT1G32730.1  protein_id AT1G32730.1p  transcript_id AT1G32730.1  
At1g32740	chr1:011844883	0.0	W/11844883-11844935,11845017-11845111,11845200-11845456,11845549-11846082	AT1G32740.1  CDS  gene_syn F6N18.12, F6N18_12  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT5G47050.1); Has 553 Blast hits to 553 proteins in 98 species: Archae - 0; Bacteria - 4; Metazoa - 265; Fungi - 17; Plants - 212; Viruses - 17; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT1G32740.1p  transcript_id AT1G32740.1  protein_id AT1G32740.1p  transcript_id AT1G32740.1  
At1g32750	chr1:011856216	0.0	C/11856216-11856261,11855406-11855509,11855168-11855230,11854988-11855033,11854359-11854613,11854045-11854136,11853774-11853945,11852299-11853400,11851955-11852157,11851596-11851833,11851116-11851452,11850485-11850688,11850267-11850359,11849948-11850154,11849387-11849593,11848782-11849265,11848499-11848698,11848286-11848387,11848147-11848203,11846879-11848066,11846385-11846744	AT1G32750.1  CDS  gene_syn F6N18.13, F6N18_13, GTD01, GTD1, HAC13, HAF01, HAF1, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 13, HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 1, TAF1, TBP-ASSOCIATED FACTOR 1  gene HAF01  function This gene is predicted to encode a histone acetyltransferase. Five lines with RNAi constructs directed against HAF1 grow normally and can produce root calli, but have defects in agrobacterium-mediated transformation.  go_process DNA mediated transformation|GO:0009294|17827277|IMP  go_function DNA binding|GO:0003677||ISS  go_function histone acetyltransferase activity|GO:0004402|12466527|ISS  product HAF01; DNA binding / histone acetyltransferase  note HAF01; FUNCTIONS IN: histone acetyltransferase activity, DNA binding; INVOLVED IN: DNA mediated transformation; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TAFII-230 TBP-binding (InterPro:IPR009067), Ubiquitin (InterPro:IPR000626), Bromodomain, conserved site (InterPro:IPR018359), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: HAF2 (HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 2); DNA binding / histone acetyltransferase/ transcription cofactor (TAIR:AT3G19040.1); Has 20071 Blast hits to 12360 proteins in 839 species: Archae - 8; Bacteria - 443; Metazoa - 10651; Fungi - 2108; Plants - 1871; Viruses - 152; Other Eukaryotes - 4838 (source: NCBI BLink).  protein_id AT1G32750.1p  transcript_id AT1G32750.1  protein_id AT1G32750.1p  transcript_id AT1G32750.1  
At1g32760	chr1:011858251	0.0	W/11858251-11859195	AT1G32760.1  CDS  gene_syn F6N18.14, F6N18_14  go_component chloroplast|GO:0009507||IEA  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  product glutaredoxin family protein  note glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin family protein (TAIR:AT4G10630.1); Has 332 Blast hits to 322 proteins in 57 species: Archae - 0; Bacteria - 5; Metazoa - 96; Fungi - 2; Plants - 215; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G32760.1p  transcript_id AT1G32760.1  protein_id AT1G32760.1p  transcript_id AT1G32760.1  
At1g32763	chr1:011860807	0.0	C/11860807-11860891,11860486-11860646	AT1G32763.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04545.1); Has 26 Blast hits to 26 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32763.1p  transcript_id AT1G32763.1  protein_id AT1G32763.1p  transcript_id AT1G32763.1  
At1g32770	chr1:011866764	0.0	C/11866764-11866950,11866403-11866668,11865343-11865966	AT1G32770.1  CDS  gene_syn ANAC012, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 12, F6N18.15, F6N18_15, NAC SECONDARY WALL THICKENING PROMOTING 3, NST3, SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, SND1  gene ANAC012  function Encodes SND1, a NAC Domain transcription factor involved in secondary wall biosynthesis in fibers. Expressed specifically in interfascicular fibers and xylary fibers in stems. Expressed in the procambium of stem inflorescences and root. May act as a negative regulator of secondary wall thickening in xylary fibers. Acts redundantly with NST1 to control development of secondary walls in siliques.  go_component nucleus|GO:0005634|17114348|IDA  go_process multicellular organismal development|GO:0007275||ISS  go_process lignin biosynthetic process|GO:0009809|17237351|IGI  go_process secondary cell wall biogenesis|GO:0009834|17114348|IGI  go_process secondary cell wall biogenesis|GO:0009834|17114348|IMP  go_process secondary cell wall biogenesis|GO:0009834|17237351|IGI  go_process fruit dehiscence|GO:0010047|18657234|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|17114348|IDA  go_function specific transcriptional repressor activity|GO:0016566|17565617|IMP  product ANAC012 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 12); specific transcriptional repressor/ transcription activator/ transcription factor  note ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 12 (ANAC012); FUNCTIONS IN: transcription factor activity, transcription activator activity, specific transcriptional repressor activity; INVOLVED IN: multicellular organismal development, lignin biosynthetic process, fruit dehiscence, secondary cell wall biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: EMB2301 (EMBRYO DEFECTIVE 2301); transcription activator/ transcription factor (TAIR:AT2G46770.1); Has 1553 Blast hits to 1551 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1553; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32770.1p  transcript_id AT1G32770.1  protein_id AT1G32770.1p  transcript_id AT1G32770.1  
At1g32780	chr1:011872559	0.0	C/11872559-11872595,11872311-11872447,11872168-11872217,11871726-11872078,11871264-11871346,11871074-11871149,11870678-11870739,11870466-11870561,11870193-11870354,11869977-11870105	AT1G32780.1  CDS  gene_syn F6N18.16, F6N18_16  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product alcohol dehydrogenase, putative  note alcohol dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: alcohol dehydrogenase, putative (TAIR:AT1G64710.1); Has 20612 Blast hits to 20600 proteins in 1934 species: Archae - 355; Bacteria - 11258; Metazoa - 1200; Fungi - 1586; Plants - 3022; Viruses - 3; Other Eukaryotes - 3188 (source: NCBI BLink).  protein_id AT1G32780.1p  transcript_id AT1G32780.1  protein_id AT1G32780.1p  transcript_id AT1G32780.1  
At1g32790	chr1:011876748	0.0	C/11876748-11877188,11876350-11876457,11876212-11876256,11876055-11876127,11875865-11875977,11875730-11875789,11875598-11875645,11875443-11875511,11875305-11875370,11875028-11875225	AT1G32790.2  CDS  gene_syn CID11, F6N18.17, F6N18_17  gene CID11  function RNA-binding protein, putative, similar to RNA-binding protein GB:CAB40027 GI:4539439 from (Arabidopsis thaliana).Member of a family of PAB2 binding domain proteins.  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  go_function protein binding|GO:0005515|15650869|TAS  product RNA-binding protein, putative  note CID11; FUNCTIONS IN: protein binding, RNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CID12; RNA binding (TAIR:AT4G10610.2); Has 3074 Blast hits to 2628 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 2043; Fungi - 275; Plants - 470; Viruses - 0; Other Eukaryotes - 286 (source: NCBI BLink).  protein_id AT1G32790.2p  transcript_id AT1G32790.2  protein_id AT1G32790.2p  transcript_id AT1G32790.2  
At1g32790	chr1:011876748	0.0	C/11876748-11877188,11876350-11876457,11876212-11876256,11876055-11876127,11875865-11875977,11875730-11875789,11875598-11875645,11875443-11875511,11875309-11875370,11875174-11875231	AT1G32790.1  CDS  gene_syn CID11, F6N18.17, F6N18_17  gene CID11  function RNA-binding protein, putative, similar to RNA-binding protein GB:CAB40027 GI:4539439 from (Arabidopsis thaliana).Member of a family of PAB2 binding domain proteins.  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  go_function protein binding|GO:0005515|15650869|TAS  product RNA-binding protein, putative  note CID11; FUNCTIONS IN: protein binding, RNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CID12; RNA binding (TAIR:AT4G10610.1); Has 3344 Blast hits to 2764 proteins in 225 species: Archae - 0; Bacteria - 10; Metazoa - 2268; Fungi - 289; Plants - 484; Viruses - 0; Other Eukaryotes - 293 (source: NCBI BLink).  protein_id AT1G32790.1p  transcript_id AT1G32790.1  protein_id AT1G32790.1p  transcript_id AT1G32790.1  
At1g32810	chr1:011881810	0.0	W/11881810-11882641,11882729-11883057,11883434-11884429,11884519-11884665,11884737-11885147,11885260-11885382,11885475-11885843	AT1G32810.2  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT4G10600.1); Has 8395 Blast hits to 5192 proteins in 329 species: Archae - 6; Bacteria - 409; Metazoa - 4261; Fungi - 930; Plants - 253; Viruses - 72; Other Eukaryotes - 2464 (source: NCBI BLink).  protein_id AT1G32810.2p  transcript_id AT1G32810.2  protein_id AT1G32810.2p  transcript_id AT1G32810.2  
At1g32820	chr1:011888389	0.0	W/11888389-11890377	AT1G32820.1  mRNA_TE_gene  pseudo  gene_syn F9L11.2, F9L11_2  note Transposable element gene, Mutator-like transposase family, has a 1.6e-83 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g32830	chr1:011891181	0.0	C/11891181-11894820	AT1G32830.1  mRNA_TE_gene  pseudo  gene_syn F9L11.3, F9L11_3  note Transposable element gene, similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT3G30450.1); similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT2G04970.1); similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT2G14140.1); similar to Agenet domain containing protein [Brassica oleracea] (GB:ABD65016.1); contains InterPro domain Protein of unknown function DUF1299; (InterPro:IPR010725); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623)  
At1g32840	chr1:011896546	0.0	C/11896546-11899695	AT1G32840.1  mRNA_TE_gene  pseudo  gene_syn F9L11.4, F9L11_4  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G47260.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G04010.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G44500.1); similar to hypothetical protein 26.t00072 [Brassica oleracea] (GB:ABD65017.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At1g32850	chr1:011902629	0.0	W/11902629-11902774,11903274-11903486,11903583-11903727,11903839-11903898,11904006-11904104,11904245-11904619,11904702-11904842,11904994-11905164,11905302-11905559,11905637-11905791,11905883-11906651,11906754-11906900	AT1G32850.1  CDS  gene_syn F9L11.5, F9L11_5, UBIQUITIN-SPECIFIC PROTEASE 11, UBP11  gene UBP11  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_function cysteine-type endopeptidase activity|GO:0004197||ISS  go_function ubiquitin thiolesterase activity|GO:0004221||ISS  product UBP11 (UBIQUITIN-SPECIFIC PROTEASE 11); cysteine-type endopeptidase/ ubiquitin thiolesterase  note UBIQUITIN-SPECIFIC PROTEASE 11 (UBP11); FUNCTIONS IN: cysteine-type endopeptidase activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin-specific peptidase, DUSP domain (InterPro:IPR006615), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Ubiquitin carboxyl-terminal hydrolase, N-terminal region 2 (InterPro:IPR010460); BEST Arabidopsis thaliana protein match is: ubiquitin carboxyl-terminal hydrolase family protein (TAIR:AT4G10590.2); Has 8724 Blast hits to 5832 proteins in 187 species: Archae - 0; Bacteria - 6; Metazoa - 4942; Fungi - 1272; Plants - 762; Viruses - 8; Other Eukaryotes - 1734 (source: NCBI BLink).  protein_id AT1G32850.1p  transcript_id AT1G32850.1  protein_id AT1G32850.1p  transcript_id AT1G32850.1  
At1g32860	chr1:011907595	0.0	C/11907595-11908803,11907308-11907379	AT1G32860.1  CDS  gene_syn F9L11.6, F9L11_6  go_component plasma membrane|GO:0005886|17317660|IDA  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: ATBG_PAP; glucan endo-1,3-beta-D-glucosidase/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT5G42100.2); Has 1388 Blast hits to 1375 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1382; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G32860.1p  transcript_id AT1G32860.1  protein_id AT1G32860.1p  transcript_id AT1G32860.1  
At1g32870	chr1:011911745	0.0	W/11911745-11911913,11912156-11913145,11913283-11913692	AT1G32870.2  CDS  gene_syn ANAC013, ANAC13, Arabidopsis NAC domain containing protein 13, Arabidopsis thaliana NAC domain protein 13, F9L11.7, F9L11_7  gene ANAC13  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_process response to red light|GO:0010114|18266923|IEP  go_process response to UV-B|GO:0010224|18266923|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  product ANAC13 (Arabidopsis thaliana NAC domain protein 13); transcription factor  note Arabidopsis thaliana NAC domain protein 13 (ANAC13); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, response to UV-B, response to red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac016 (Arabidopsis NAC domain containing protein 16); transcription factor (TAIR:AT1G34180.1); Has 1610 Blast hits to 1608 proteins in 63 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 2; Plants - 1578; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT1G32870.2p  transcript_id AT1G32870.2  protein_id AT1G32870.2p  transcript_id AT1G32870.2  
At1g32870	chr1:011911745	0.0	W/11911745-11911913,11912156-11913163,11913283-11913692	AT1G32870.1  CDS  gene_syn ANAC013, ANAC13, Arabidopsis NAC domain containing protein 13, Arabidopsis thaliana NAC domain protein 13, F9L11.7, F9L11_7  gene ANAC13  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_process response to red light|GO:0010114|18266923|IEP  go_process response to UV-B|GO:0010224|18266923|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  product ANAC13 (Arabidopsis thaliana NAC domain protein 13); transcription factor  note Arabidopsis thaliana NAC domain protein 13 (ANAC13); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, response to UV-B, response to red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac016 (Arabidopsis NAC domain containing protein 16); transcription factor (TAIR:AT1G34180.1); Has 1601 Blast hits to 1599 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 1578; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT1G32870.1p  transcript_id AT1G32870.1  protein_id AT1G32870.1p  transcript_id AT1G32870.1  
At1g32880	chr1:011914610	0.0	C/11914610-11914735,11914324-11914451,11913928-11914225	AT1G32880.1  CDS  gene_syn F9L11.34, F9L11_34  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process intracellular protein transport|GO:0006886||ISS  go_function protein transporter activity|GO:0008565||ISS  product importin alpha-1 subunit, putative  note importin alpha-1 subunit, putative; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: IMPA-1 (IMPORTIN ALPHA ISOFORM 1); binding / protein transporter (TAIR:AT3G06720.2); Has 938 Blast hits to 917 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 601; Fungi - 107; Plants - 132; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT1G32880.1p  transcript_id AT1G32880.1  protein_id AT1G32880.1p  transcript_id AT1G32880.1  
At1g32890	chr1:011914967	0.0	C/11914967-11919845	AT1G32890.1  mRNA_TE_gene  pseudo  gene_syn F9L11.35  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.2e-37 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At1g32900	chr1:011923165	0.0	C/11923165-11923506,11923005-11923085,11922815-11922913,11922652-11922741,11922414-11922477,11922215-11922315,11921967-11922076,11921635-11921878,11921375-11921551,11921013-11921291,11920781-11920909,11920582-11920698	AT1G32900.1  CDS  gene_syn F9L11.8, F9L11_8  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process biosynthetic process|GO:0009058||IEA  go_process glucan biosynthetic process|GO:0009250||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product starch synthase, putative  note starch synthase, putative; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process, glucan biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycogen/starch synthases, ADP-glucose type (InterPro:IPR011835), Starch synthase catalytic region (InterPro:IPR013534), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: AtSS2 (starch synthase 2); transferase, transferring glycosyl groups (TAIR:AT3G01180.1); Has 9548 Blast hits to 9532 proteins in 2484 species: Archae - 212; Bacteria - 3723; Metazoa - 12; Fungi - 137; Plants - 4346; Viruses - 0; Other Eukaryotes - 1118 (source: NCBI BLink).  protein_id AT1G32900.1p  transcript_id AT1G32900.1  protein_id AT1G32900.1p  transcript_id AT1G32900.1  
At1g32910	chr1:011925426	0.0	W/11925426-11925839,11925928-11926908	AT1G32910.1  CDS  gene_syn F9L11.9, F9L11_9  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT1G78990.1); Has 1187 Blast hits to 1183 proteins in 98 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 17; Plants - 1168; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32910.1p  transcript_id AT1G32910.1  protein_id AT1G32910.1p  transcript_id AT1G32910.1  
At1g32920	chr1:011928901	0.0	W/11928901-11929137	AT1G32920.1  CDS  gene_syn F9L11.25, F9L11_25  go_component endomembrane system|GO:0012505||IEA  go_process response to wounding|GO:0009611|17953483|IEP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to wounding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32928.1); Has 14 Blast hits to 14 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32920.1p  transcript_id AT1G32920.1  protein_id AT1G32920.1p  transcript_id AT1G32920.1  
At1g32928	chr1:011931332	0.0	W/11931332-11931586	AT1G32928.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32920.1); Has 14 Blast hits to 14 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32928.1p  transcript_id AT1G32928.1  protein_id AT1G32928.1p  transcript_id AT1G32928.1  
At1g32930	chr1:011934293	0.0	C/11934293-11934399,11933730-11933832,11933594-11933640,11933303-11933514,11933148-11933211,11932987-11933059,11932793-11932913,11932626-11932713,11932422-11932547,11932223-11932332,11931980-11932128	AT1G32930.1  CDS  gene_syn F9L11.10, F9L11_10  go_component membrane|GO:0016020||IEA  go_process protein amino acid glycosylation|GO:0006486||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product galactosyltransferase family protein  note galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: galactosyltransferase family protein (TAIR:AT1G05170.1); Has 742 Blast hits to 741 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 457; Fungi - 0; Plants - 276; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G32930.1p  transcript_id AT1G32930.1  protein_id AT1G32930.1p  transcript_id AT1G32930.1  
At1g32940	chr1:011937634	0.0	W/11937634-11937717,11937800-11937891,11937976-11938073,11938207-11938362,11938465-11939141,11939233-11939321,11939428-11939676,11939805-11939919,11940001-11940193,11940285-11940856	AT1G32940.1  CDS  gene_syn ATSBT3.5, F9L11.11, F9L11_11, SBT3.5  gene SBT3.5  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_component apoplast|GO:0048046||IDA  go_process proteolysis|GO:0006508||ISS  product SBT3.5; identical protein binding / serine-type endopeptidase  note SBT3.5; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: apoplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, F mature embryo stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: SBT3.3; identical protein binding / serine-type endopeptidase (TAIR:AT1G32960.1); Has 3781 Blast hits to 3568 proteins in 616 species: Archae - 127; Bacteria - 2040; Metazoa - 74; Fungi - 118; Plants - 905; Viruses - 0; Other Eukaryotes - 517 (source: NCBI BLink).  protein_id AT1G32940.1p  transcript_id AT1G32940.1  protein_id AT1G32940.1p  transcript_id AT1G32940.1  
At1g32950	chr1:011941438	0.0	W/11941438-11941521,11941612-11941703,11941781-11941878,11941986-11942141,11942252-11942925,11943029-11943117,11943222-11943470,11943571-11943685,11943756-11943948,11944028-11944599	AT1G32950.1  CDS  gene_syn F9L11.12, F9L11_12  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product subtilase family protein  note subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: SBT3.5; identical protein binding / serine-type endopeptidase (TAIR:AT1G32940.1); Has 4412 Blast hits to 3958 proteins in 667 species: Archae - 131; Bacteria - 2560; Metazoa - 93; Fungi - 118; Plants - 909; Viruses - 0; Other Eukaryotes - 601 (source: NCBI BLink).  protein_id AT1G32950.1p  transcript_id AT1G32950.1  protein_id AT1G32950.1p  transcript_id AT1G32950.1  
At1g32960	chr1:011945351	0.0	W/11945351-11945443,11945535-11945626,11945719-11945816,11945956-11946111,11946203-11946879,11946971-11947059,11947131-11947494,11947577-11947769,11947858-11948429	AT1G32960.1  CDS  gene_syn ATSBT3.3, F9L11.13, F9L11_13, SBT3.3  gene SBT3.3  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_component apoplast|GO:0048046||IEP  go_process proteolysis|GO:0006508||ISS  product SBT3.3; identical protein binding / serine-type endopeptidase  note SBT3.3; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: apoplast, plant-type cell wall; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: SBT3.5; identical protein binding / serine-type endopeptidase (TAIR:AT1G32940.1); Has 4027 Blast hits to 3729 proteins in 635 species: Archae - 137; Bacteria - 2213; Metazoa - 111; Fungi - 113; Plants - 920; Viruses - 0; Other Eukaryotes - 533 (source: NCBI BLink).  protein_id AT1G32960.1p  transcript_id AT1G32960.1  protein_id AT1G32960.1p  transcript_id AT1G32960.1  
At1g32970	chr1:011951914	0.0	C/11951914-11951982,11951697-11951788,11951539-11951625,11951272-11951393,11951110-11951219,11950503-11951012,11950334-11950422,11950007-11950252,11949808-11949922,11948721-11949485	AT1G32970.1  CDS  gene_syn F9L11.14, F9L11_14  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product subtilase family protein  note subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT4G10540.1); Has 4067 Blast hits to 3726 proteins in 672 species: Archae - 136; Bacteria - 2324; Metazoa - 38; Fungi - 102; Plants - 850; Viruses - 0; Other Eukaryotes - 617 (source: NCBI BLink).  protein_id AT1G32970.1p  transcript_id AT1G32970.1  protein_id AT1G32970.1p  transcript_id AT1G32970.1  
At1g32975	chr1:011953089	0.0	W/11953089-11953122,11953571-11953899	AT1G32975.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 0; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32975.1p  transcript_id AT1G32975.1  protein_id AT1G32975.1p  transcript_id AT1G32975.1  
At1g32980	chr1:011955333	0.0	C/11955333-11955362,11955217-11955249,11955050-11955166,11954278-11954928	AT1G32980.1  CDS  gene_syn F9L11.33, F9L11_33  go_process proteolysis|GO:0006508||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_component cellular_component|GO:0005575||ND  product subtilisin-like serine protease-related  note subtilisin-like serine protease-related; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT1G32970.1); Has 2760 Blast hits to 2755 proteins in 513 species: Archae - 62; Bacteria - 1496; Metazoa - 14; Fungi - 94; Plants - 760; Viruses - 0; Other Eukaryotes - 334 (source: NCBI BLink).  protein_id AT1G32980.1p  transcript_id AT1G32980.1  protein_id AT1G32980.1p  transcript_id AT1G32980.1  
At1g32990	chr1:011955827	0.0	W/11955827-11956046,11956138-11956310,11956523-11956586,11956928-11957139	AT1G32990.1  CDS  gene_syn PLASTID RIBOSOMAL PROTEIN L11, PRPL11  gene PRPL11  function mutant has Decreased effective quantum yield of photosystem II; Pale green plants; Reduced growth rate; Plastid Ribosomal Protein L11  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product PRPL11 (PLASTID RIBOSOMAL PROTEIN L11); structural constituent of ribosome  note PLASTID RIBOSOMAL PROTEIN L11 (PRPL11); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 7 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L11, bacterial-type (InterPro:IPR006519), Ribosomal protein L11 (InterPro:IPR000911); BEST Arabidopsis thaliana protein match is: ribosomal protein L11 family protein (TAIR:AT5G51610.1); Has 5822 Blast hits to 5822 proteins in 1582 species: Archae - 207; Bacteria - 2958; Metazoa - 100; Fungi - 82; Plants - 65; Viruses - 0; Other Eukaryotes - 2410 (source: NCBI BLink).  protein_id AT1G32990.1p  transcript_id AT1G32990.1  protein_id AT1G32990.1p  transcript_id AT1G32990.1  
At1g32992	chr1:011957460	0.0	W/11957460-11957730	AT1G32992.1  miRNA  gene_syn MICRORNA856A, MIR856A  gene MIR856A  function Encodes a microRNA that targets CHX18 and potentially ZAT1. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UAAUCCUACCAAUAACUUCAGC  product MIR856A (MICRORNA856A); miRNA  transcript_id AT1G32992.1  
At1g33000	chr1:011957968	0.0	W/11957968-11958162	AT1G33000.1  mRNA_TE_gene  pseudo  gene_syn F9L11.26, F9L11_26  note Transposable element gene, similar to nucleic acid binding / ribonuclease H [Arabidopsis thaliana] (TAIR:AT4G08860.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)  
At1g33010	chr1:011959287	0.0	W/11959287-11959399,11959484-11959852,11959988-11960591	AT1G33010.1  CDS  gene_syn F9L11.16, F9L11_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G33020.1); Has 325 Blast hits to 301 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 325; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G33010.1p  transcript_id AT1G33010.1  protein_id AT1G33010.1p  transcript_id AT1G33010.1  
At1g33020	chr1:011962746	0.0	W/11962746-11964212,11964653-11964832	AT1G33020.1  CDS  gene_syn F9L11.17, F9L11_17  go_component cellular_component|GO:0005575||ND  product F-box family protein  note F-box family protein; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57590.1); Has 761 Blast hits to 723 proteins in 79 species: Archae - 0; Bacteria - 49; Metazoa - 22; Fungi - 0; Plants - 687; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G33020.1p  transcript_id AT1G33020.1  protein_id AT1G33020.1p  transcript_id AT1G33020.1  
At1g33030	chr1:011965836	0.0	C/11965836-11966212,11965428-11965741,11965287-11965351,11964885-11965187	AT1G33030.1  CDS  gene_syn F9L11.18, F9L11_18  go_component cytosol|GO:0005829|9484457|TAS  go_process lignin biosynthetic process|GO:0009809|7770534|ISS  go_function O-methyltransferase activity|GO:0008171|7770534|ISS  product O-methyltransferase family 2 protein  note O-methyltransferase family 2 protein; FUNCTIONS IN: O-methyltransferase activity; INVOLVED IN: lignin biosynthetic process; LOCATED IN: cytosol; EXPRESSED IN: stem, stamen, leaf; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: ATOMT1 (O-METHYLTRANSFERASE 1); caffeate O-methyltransferase/ myricetin 3 -O-methyltransferase/ quercetin 3-O-methyltransferase (TAIR:AT5G54160.1); Has 2066 Blast hits to 2064 proteins in 423 species: Archae - 0; Bacteria - 584; Metazoa - 76; Fungi - 395; Plants - 923; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT1G33030.1p  transcript_id AT1G33030.1  protein_id AT1G33030.1p  transcript_id AT1G33030.1  
At1g33040	chr1:011966547	0.0	W/11966547-11966615,11966705-11966783,11967121-11967251,11967346-11967696	AT1G33040.1  CDS  gene_syn F9L11.19, F9L11_19, NACA5, NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5  gene NACA5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5)  note NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5 (NACA5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Nascent polypeptide-associated complex, alpha subunit (InterPro:IPR016641), Nascent polypeptide-associated complex NAC (InterPro:IPR002715); BEST Arabidopsis thaliana protein match is: nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative (TAIR:AT4G10480.2); Has 1370 Blast hits to 1229 proteins in 204 species: Archae - 10; Bacteria - 22; Metazoa - 702; Fungi - 200; Plants - 116; Viruses - 18; Other Eukaryotes - 302 (source: NCBI BLink).  protein_id AT1G33040.1p  transcript_id AT1G33040.1  protein_id AT1G33040.1p  transcript_id AT1G33040.1  
At1g33050	chr1:011970653	0.0	C/11970653-11970890,11968971-11970511,11968520-11968675	AT1G33050.3  CDS  gene_syn T9L6.12, T9L6_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10470.1); Has 192 Blast hits to 137 proteins in 49 species: Archae - 0; Bacteria - 61; Metazoa - 47; Fungi - 10; Plants - 32; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT1G33050.3p  transcript_id AT1G33050.3  protein_id AT1G33050.3p  transcript_id AT1G33050.3  
At1g33050	chr1:011970653	0.0	C/11970653-11970890,11968971-11970511,11968589-11968675,11968361-11968507	AT1G33050.2  CDS  gene_syn T9L6.12, T9L6_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10470.1); Has 188 Blast hits to 136 proteins in 50 species: Archae - 0; Bacteria - 61; Metazoa - 46; Fungi - 10; Plants - 29; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT1G33050.2p  transcript_id AT1G33050.2  protein_id AT1G33050.2p  transcript_id AT1G33050.2  
At1g33050	chr1:011970653	0.0	C/11970653-11970890,11968971-11970511,11968589-11968744,11968361-11968507	AT1G33050.1  CDS  gene_syn T9L6.12, T9L6_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10470.1); Has 485 Blast hits to 194 proteins in 59 species: Archae - 0; Bacteria - 116; Metazoa - 108; Fungi - 45; Plants - 36; Viruses - 0; Other Eukaryotes - 180 (source: NCBI BLink).  protein_id AT1G33050.1p  transcript_id AT1G33050.1  protein_id AT1G33050.1p  transcript_id AT1G33050.1  
At1g33055	chr1:011972336	0.0	C/11972336-11972536	AT1G33055.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G33055.1p  transcript_id AT1G33055.1  protein_id AT1G33055.1p  transcript_id AT1G33055.1  
At1g33060	chr1:011978283	0.0	C/11978283-11978493,11977883-11978160,11977039-11977359,11976561-11976929,11976054-11976485,11975829-11975978,11975518-11975703	AT1G33060.1  CDS  gene_syn ANAC014, ARABIDOPSIS NAC 014, T9L6.13, T9L6_13  gene ANAC014  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product no apical meristem (NAM) family protein  note ARABIDOPSIS NAC 014 (ANAC014); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NTL9 (NAC transcription factor-like 9); transcription factor (TAIR:AT4G35580.1); Has 1631 Blast hits to 1628 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 1621; Viruses - 5; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G33060.1p  transcript_id AT1G33060.1  protein_id AT1G33060.1p  transcript_id AT1G33060.1  
At1g33060	chr1:011978283	0.0	C/11978283-11978493,11977883-11978160,11977039-11977359,11976561-11976929,11976054-11976485,11975829-11975978,11975518-11975715	AT1G33060.2  CDS  gene_syn ANAC014, ARABIDOPSIS NAC 014, T9L6.13, T9L6_13  gene ANAC014  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product no apical meristem (NAM) family protein  note ARABIDOPSIS NAC 014 (ANAC014); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NTL9 (NAC transcription factor-like 9); transcription factor (TAIR:AT4G35580.1); Has 1628 Blast hits to 1625 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1621; Viruses - 5; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G33060.2p  transcript_id AT1G33060.2  protein_id AT1G33060.2p  transcript_id AT1G33060.2  
At1g33070	chr1:011982889	0.0	W/11982889-11982963,11984784-11985081,11985175-11985299	AT1G33070.1  CDS  gene_syn T9L6.11, T9L6_11  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700||IEA  go_function sequence-specific DNA binding|GO:0043565||IEA  product sequence-specific DNA binding / transcription factor  note sequence-specific DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL86 (AGAMOUS-LIKE 86); DNA binding / transcription factor (TAIR:AT1G31630.1); Has 182 Blast hits to 178 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 182; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G33070.1p  transcript_id AT1G33070.1  protein_id AT1G33070.1p  transcript_id AT1G33070.1  
At1g33080	chr1:011985752	0.0	W/11985752-11986024,11987130-11987671,11988656-11988742,11989082-11989138,11989286-11989524,11989823-11989941,11990042-11990128,11990247-11990327	AT1G33080.1  CDS  gene_syn T9L6.14, T9L6_14  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G33110.1); Has 5803 Blast hits to 5759 proteins in 1072 species: Archae - 103; Bacteria - 3816; Metazoa - 118; Fungi - 208; Plants - 704; Viruses - 0; Other Eukaryotes - 854 (source: NCBI BLink).  protein_id AT1G33080.1p  transcript_id AT1G33080.1  protein_id AT1G33080.1p  transcript_id AT1G33080.1  
At1g33080	chr1:011985752	0.0	W/11985752-11986024,11987130-11987671,11988656-11988742,11989082-11989138,11989286-11989524,11989823-11989941,11990042-11990197	AT1G33080.2  CDS  gene_syn T9L6.14, T9L6_14  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G33110.1); Has 5791 Blast hits to 5747 proteins in 1071 species: Archae - 103; Bacteria - 3809; Metazoa - 118; Fungi - 208; Plants - 700; Viruses - 0; Other Eukaryotes - 853 (source: NCBI BLink).  protein_id AT1G33080.2p  transcript_id AT1G33080.2  protein_id AT1G33080.2p  transcript_id AT1G33080.2  
At1g33090	chr1:011993458	0.0	W/11993458-11993730,11994474-11995015,11995257-11995343,11995510-11995566,11995701-11995939,11996044-11996162,11996262-11996348,11996462-11996542	AT1G33090.1  CDS  gene_syn T9L6.17, T9L6_17  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: drug transporter activity, antiporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G33110.1); Has 5585 Blast hits to 5544 proteins in 1058 species: Archae - 132; Bacteria - 3651; Metazoa - 119; Fungi - 206; Plants - 704; Viruses - 0; Other Eukaryotes - 773 (source: NCBI BLink).  protein_id AT1G33090.1p  transcript_id AT1G33090.1  protein_id AT1G33090.1p  transcript_id AT1G33090.1  
At1g33100	chr1:011997683	0.0	W/11997683-11997946,11998987-11999528,11999974-12000060,12000236-12000292,12000423-12000497,12000546-12000661,12000764-12000882,12000966-12001052,12001228-12001308	AT1G33100.1  CDS  gene_syn T9L6.18, T9L6_18  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: drug transporter activity, antiporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G33090.1); Has 4965 Blast hits to 4939 proteins in 1031 species: Archae - 83; Bacteria - 3194; Metazoa - 119; Fungi - 206; Plants - 696; Viruses - 0; Other Eukaryotes - 667 (source: NCBI BLink).  protein_id AT1G33100.1p  transcript_id AT1G33100.1  protein_id AT1G33100.1p  transcript_id AT1G33100.1  
At1g33102	chr1:012002533	0.0	C/12002533-12002631	AT1G33102.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G33102.1p  transcript_id AT1G33102.1  protein_id AT1G33102.1p  transcript_id AT1G33102.1  
At1g33110	chr1:012005084	0.0	W/12005084-12005356,12006573-12007114,12007448-12007534,12007642-12007698,12007785-12008023,12008128-12008246,12008359-12008445,12008538-12008618	AT1G33110.1  CDS  gene_syn T9L6.1, T9L6_1  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020|11152613|ISS  go_function transporter activity|GO:0005215||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G33090.1); Has 5479 Blast hits to 5447 proteins in 1073 species: Archae - 107; Bacteria - 3568; Metazoa - 119; Fungi - 206; Plants - 704; Viruses - 0; Other Eukaryotes - 775 (source: NCBI BLink).  protein_id AT1G33110.1p  transcript_id AT1G33110.1  protein_id AT1G33110.1p  transcript_id AT1G33110.1  
At1g33110	chr1:012005084	0.0	W/12005084-12005356,12006573-12007114,12007448-12007534,12007642-12007698,12007785-12008040	AT1G33110.2  CDS  gene_syn T9L6.1, T9L6_1  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020|11152613|ISS  go_function transporter activity|GO:0005215||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G33090.1); Has 4185 Blast hits to 4164 proteins in 928 species: Archae - 53; Bacteria - 2615; Metazoa - 117; Fungi - 206; Plants - 675; Viruses - 0; Other Eukaryotes - 519 (source: NCBI BLink).  protein_id AT1G33110.2p  transcript_id AT1G33110.2  protein_id AT1G33110.2p  transcript_id AT1G33110.2  
At1g33120	chr1:012010986	0.0	W/12010986-12011360,12011526-12011648,12012137-12012223	AT1G33120.1  CDS  go_component nucleolus|GO:0005730|15496452|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L9 (RPL90B)  note 60S ribosomal protein L9 (RPL90B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: fruit, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L6 (InterPro:IPR000702), Ribosomal protein L6, conserved site-2 (InterPro:IPR002359); BEST Arabidopsis thaliana protein match is: PGY2 (PIGGYBACK2); structural constituent of ribosome (TAIR:AT1G33140.1); Has 1242 Blast hits to 1241 proteins in 345 species: Archae - 226; Bacteria - 118; Metazoa - 305; Fungi - 113; Plants - 279; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink).  protein_id AT1G33120.1p  transcript_id AT1G33120.1  protein_id AT1G33120.1p  transcript_id AT1G33120.1  
At1g33130	chr1:012016651	0.0	C/12016651-12018654	AT1G33130.1  mRNA_TE_gene  pseudo  gene_syn T9L6.3, T9L6_3  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 1.3e-125 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At1g33135	chr1:012018683	0.0	W/12018683-12019195	AT1G33135.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G13320.1); similar to unnamed protein product [Tetraodon nigroviridis] (GB:CAG11022.1)  
At1g33140	chr1:012023360	0.0	W/12023360-12023734,12023900-12024022,12024416-12024502	AT1G33140.1  CDS  gene_syn PGY2, PIGGYBACK2, T9L6.5  gene PGY2  function Encodes ribosomal protein L9. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2.  go_component vacuole|GO:0005773|15215502|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process adaxial/abaxial pattern formation|GO:0009955|18305008|IGI  go_function structural constituent of ribosome|GO:0003735||ISS  product PGY2 (PIGGYBACK2); structural constituent of ribosome  note PIGGYBACK2 (PGY2); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: adaxial/abaxial pattern formation, translation; LOCATED IN: cytosolic large ribosomal subunit, vacuole, large ribosomal subunit, membrane, chloroplast envelope; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein L6 (InterPro:IPR000702), Ribosomal protein L6, conserved site-2 (InterPro:IPR002359); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L9 (RPL90B) (TAIR:AT1G33120.1); Has 1242 Blast hits to 1241 proteins in 345 species: Archae - 226; Bacteria - 118; Metazoa - 305; Fungi - 113; Plants - 279; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink).  protein_id AT1G33140.1p  transcript_id AT1G33140.1  protein_id AT1G33140.1p  transcript_id AT1G33140.1  
At1g33160	chr1:012024806	0.0	W/12024806-12025328	AT1G33160.1  pseudogenic_transcript  pseudo  gene_syn T9L6.15  note pseudogene, similar to actin, blastp match of 74% identity and 8.3e-48 P-value to GP|9965319|gb|AAG10041.1|AF288226_1|AF288226 actin {Setaria italica}  
At1g33170	chr1:012027262	0.0	W/12027262-12027984,12028174-12028384,12028472-12028772,12029226-12029693,12030181-12030397	AT1G33170.1  CDS  gene_syn T9L6.6, T9L6_6  go_process biological_process|GO:0008150||ND  product dehydration-responsive family protein  note dehydration-responsive family protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive family protein (TAIR:AT4G10440.1); Has 559 Blast hits to 552 proteins in 56 species: Archae - 2; Bacteria - 61; Metazoa - 1; Fungi - 0; Plants - 483; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G33170.1p  transcript_id AT1G33170.1  protein_id AT1G33170.1p  transcript_id AT1G33170.1  
At1g33180	chr1:012030585	0.0	W/12030585-12030892	AT1G33180.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.5e-05 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At1g33190	chr1:012033887	0.0	C/12033887-12034755	AT1G33190.1  pseudogenic_transcript  pseudo  gene_syn T9L6.16  note pseudogene, auxin-response factor (fragment)  
At1g33200	chr1:012041779	0.0	W/12041779-12044690	AT1G33200.1  mRNA_TE_gene  pseudo  gene_syn T9L6.7  note Transposable element gene, pseudogene, similar to SAE1-S9-protein, blastp match of 28% identity and 4.2e-16 P-value to GP|4760708|dbj|BAA77394.1||AB012866 SAE1-S9-protein {Brassica rapa}  
At1g33220	chr1:012044872	0.0	W/12044872-12045879	AT1G33220.1  CDS  gene_syn T9L6.8, T9L6_8  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product beta-1,3-glucanase, putative  note beta-1,3-glucanase, putative; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BETAG4; catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT5G20330.1); Has 1362 Blast hits to 1353 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1360; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G33220.1p  transcript_id AT1G33220.1  protein_id AT1G33220.1p  transcript_id AT1G33220.1  
At1g33230	chr1:012046844	0.0	W/12046844-12047044,12047121-12047199,12047281-12047375,12047480-12047584,12047674-12047753,12048554-12048644,12048727-12048834,12048922-12049008,12049353-12049421,12049666-12049794	AT1G33230.1  CDS  gene_syn T9L6.9, T9L6_9  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TMPIT-like (InterPro:IPR012926); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10430.3); Has 198 Blast hits to 198 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 148; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G33230.1p  transcript_id AT1G33230.1  protein_id AT1G33230.1p  transcript_id AT1G33230.1  
At1g33240	chr1:012054031	0.0	C/12054031-12054320,12052199-12053660,12051859-12052116	AT1G33240.1  CDS  gene_syn AT-GTL1, AT-GTL2, GT2-LIKE 1, GT2-LIKE 2, T9L6.10, T9L6_10  gene AT-GTL1  function Encodes a plant transcriptional activator that contains two separate, but similar, trihelix DNA-binding domains, similar to GT-2. Gene is expressed in all aerial parts of the plant, with higher level of expression in siliques. At-GTL2 was thought to be a duplicated copy of this gene but is likely to be a cloning artefact, the result of a chimeric clone.  go_function DNA binding|GO:0003677|9501260|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product AT-GTL1 (GT2-LIKE 1); DNA binding / transcription factor  note GT2-LIKE 1 (AT-GTL1); FUNCTIONS IN: transcription factor activity, DNA binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: GT2; transcription factor (TAIR:AT1G76890.2); Has 6758 Blast hits to 4416 proteins in 335 species: Archae - 8; Bacteria - 189; Metazoa - 3525; Fungi - 642; Plants - 861; Viruses - 133; Other Eukaryotes - 1400 (source: NCBI BLink).  protein_id AT1G33240.1p  transcript_id AT1G33240.1  protein_id AT1G33240.1p  transcript_id AT1G33240.1  
At1g33250	chr1:012058366	0.0	C/12058366-12059346,12057734-12058285,12057524-12057637	AT1G33250.1  CDS  gene_syn T16O9.11, T16O9_11  go_component chloroplast|GO:0009507||IEA  go_component membrane|GO:0016020||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product fringe-related protein  note fringe-related protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740), Fringe-like (InterPro:IPR003378); BEST Arabidopsis thaliana protein match is: fringe-related protein (TAIR:AT4G23490.1); Has 492 Blast hits to 488 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 233; Fungi - 119; Plants - 128; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G33250.1p  transcript_id AT1G33250.1  protein_id AT1G33250.1p  transcript_id AT1G33250.1  
At1g33260	chr1:012064796	0.0	W/12064796-12065120,12065390-12066114	AT1G33260.1  CDS  gene_syn T16O9.6, T16O9_6  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G10390.1); Has 73899 Blast hits to 73190 proteins in 2186 species: Archae - 51; Bacteria - 6759; Metazoa - 31156; Fungi - 5980; Plants - 17078; Viruses - 326; Other Eukaryotes - 12549 (source: NCBI BLink).  protein_id AT1G33260.1p  transcript_id AT1G33260.1  protein_id AT1G33260.1p  transcript_id AT1G33260.1  
At1g33260	chr1:012064796	0.0	W/12064796-12065120,12065393-12066114	AT1G33260.2  CDS  gene_syn T16O9.6, T16O9_6  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G10390.1); Has 76351 Blast hits to 75553 proteins in 2172 species: Archae - 51; Bacteria - 6960; Metazoa - 32372; Fungi - 6160; Plants - 17488; Viruses - 346; Other Eukaryotes - 12974 (source: NCBI BLink).  protein_id AT1G33260.2p  transcript_id AT1G33260.2  protein_id AT1G33260.2p  transcript_id AT1G33260.2  
At1g33265	chr1:012066662	0.0	W/12066662-12066896,12066990-12067054,12067484-12067571,12067675-12067820	AT1G33265.1  CDS  go_component chloroplast|GO:0009507||IEA  go_component membrane|GO:0016020||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0136, Transmembrane (InterPro:IPR005349); Has 119 Blast hits to 119 proteins in 43 species: Archae - 0; Bacteria - 27; Metazoa - 33; Fungi - 2; Plants - 51; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G33265.1p  transcript_id AT1G33265.1  protein_id AT1G33265.1p  transcript_id AT1G33265.1  
At1g33270	chr1:012069720	0.0	C/12069720-12070157,12069492-12069635,12069205-12069277,12069007-12069112,12068823-12068925	AT1G33270.2  CDS  gene_syn T16O9.13, T16O9_13  go_process lipid metabolic process|GO:0006629||IEA  product patatin-related  note patatin-related; INVOLVED IN: lipid metabolic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Patatin (InterPro:IPR002641); Has 365 Blast hits to 365 proteins in 88 species: Archae - 0; Bacteria - 6; Metazoa - 284; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT1G33270.2p  transcript_id AT1G33270.2  protein_id AT1G33270.2p  transcript_id AT1G33270.2  
At1g33270	chr1:012069720	0.0	C/12069720-12070157,12069492-12069635,12069205-12069277,12069007-12069112,12068829-12068925,12068559-12068654,12068324-12068479	AT1G33270.1  CDS  gene_syn T16O9.13, T16O9_13  go_process lipid metabolic process|GO:0006629||IEA  product patatin-related  note patatin-related; INVOLVED IN: lipid metabolic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Patatin (InterPro:IPR002641); Has 381 Blast hits to 381 proteins in 96 species: Archae - 0; Bacteria - 6; Metazoa - 287; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT1G33270.1p  transcript_id AT1G33270.1  protein_id AT1G33270.1p  transcript_id AT1G33270.1  
At1g33280	chr1:012072741	0.0	W/12072741-12072903,12072993-12073261,12073348-12073833	AT1G33280.1  CDS  gene_syn ANAC015, Arabidopsis NAC domain containing protein 15, T16O9.16, T16O9_16  gene ANAC015  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ANAC015 (Arabidopsis NAC domain containing protein 15); transcription factor  note Arabidopsis NAC domain containing protein 15 (ANAC015); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC070 (Arabidopsis NAC domain containing protein 70); transcription factor (TAIR:AT4G10350.1); Has 1608 Blast hits to 1606 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1608; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G33280.1p  transcript_id AT1G33280.1  protein_id AT1G33280.1p  transcript_id AT1G33280.1  
At1g33290	chr1:012074125	0.0	W/12074125-12074277,12074344-12074406,12074495-12074572,12074664-12074884,12074973-12075045,12075132-12075188,12075507-12075650,12075763-12075813,12075918-12075989	AT1G33290.2  CDS  gene_syn T16O9.17, T16O9_17  product sporulation protein-related  note sporulation protein-related; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: sporulation protein-related (TAIR:AT3G10420.2); Has 526 Blast hits to 314 proteins in 112 species: Archae - 0; Bacteria - 267; Metazoa - 12; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink).  protein_id AT1G33290.2p  transcript_id AT1G33290.2  protein_id AT1G33290.2p  transcript_id AT1G33290.2  
At1g33290	chr1:012074125	0.0	W/12074125-12074277,12074344-12074406,12074495-12074572,12074664-12074884,12074973-12075045,12075132-12075416,12075507-12075650,12075763-12075813,12075918-12075989	AT1G33290.1  CDS  gene_syn T16O9.17, T16O9_17  go_function nucleotide binding|GO:0000166||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  product sporulation protein-related  note sporulation protein-related; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: sporulation protein-related (TAIR:AT3G10420.2); Has 615 Blast hits to 609 proteins in 245 species: Archae - 8; Bacteria - 419; Metazoa - 33; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).  protein_id AT1G33290.1p  transcript_id AT1G33290.1  protein_id AT1G33290.1p  transcript_id AT1G33290.1  
At1g33300	chr1:012080513	0.0	C/12080513-12080824	AT1G33300.1  mRNA_TE_gene  pseudo  gene_syn F10C21.25  note Transposable element gene, pseudogene, hypothetical protein  
At1g33320	chr1:012081009	0.0	W/12081009-12081209,12081316-12081389,12081468-12081636,12081744-12081803,12081888-12082091,12082178-12082264,12082439-12082546,12082960-12083055,12083141-12083256,12083339-12083462	AT1G33320.1  CDS  gene_syn F10C21.1  go_process amino acid metabolic process|GO:0006520||IEA  go_function catalytic activity|GO:0003824||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_process methionine biosynthetic process|GO:0009086||ISS  go_function cystathionine gamma-synthase activity|GO:0003962||ISS  product cystathionine gamma-synthase, chloroplast, putative / O-succinylhomoserine (Thiol)-lyase, putative  note cystathionine gamma-synthase, chloroplast, putative / O-succinylhomoserine (Thiol)-lyase, putative; FUNCTIONS IN: pyridoxal phosphate binding, cystathionine gamma-synthase activity, catalytic activity; INVOLVED IN: amino acid metabolic process, methionine biosynthetic process; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Cys/Met metabolism, pyridoxal phosphate-dependent enzyme (InterPro:IPR000277), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: MTO1 (METHIONINE OVERACCUMULATION 1); cystathionine gamma-synthase (TAIR:AT3G01120.1); Has 14076 Blast hits to 14066 proteins in 1315 species: Archae - 128; Bacteria - 6046; Metazoa - 193; Fungi - 526; Plants - 182; Viruses - 0; Other Eukaryotes - 7001 (source: NCBI BLink).  protein_id AT1G33320.1p  transcript_id AT1G33320.1  protein_id AT1G33320.1p  transcript_id AT1G33320.1  
At1g33330	chr1:012084968	0.0	W/12084968-12085439,12085521-12085648,12085727-12085797,12085872-12085953,12086218-12086238	AT1G33330.1  CDS  gene_syn F10C21.2  go_component chloroplast|GO:0009507|18431481|IDA  go_process translational termination|GO:0006415||IEA  go_function translation release factor activity|GO:0003747||IEA  go_process translational termination|GO:0006415||ISS  go_function translation release factor activity|GO:0003747||ISS  product peptide chain release factor, putative  note peptide chain release factor, putative; FUNCTIONS IN: translation release factor activity; INVOLVED IN: translational termination; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Class I peptide chain release factor (InterPro:IPR000352); BEST Arabidopsis thaliana protein match is: peptide chain release factor, putative (TAIR:AT1G56350.1); Has 9739 Blast hits to 9739 proteins in 1553 species: Archae - 0; Bacteria - 5377; Metazoa - 210; Fungi - 152; Plants - 96; Viruses - 10; Other Eukaryotes - 3894 (source: NCBI BLink).  protein_id AT1G33330.1p  transcript_id AT1G33330.1  protein_id AT1G33330.1p  transcript_id AT1G33330.1  
At1g33340	chr1:012087628	0.0	W/12087628-12088752	AT1G33340.1  CDS  gene_syn F10C21.3  go_component clathrin coat|GO:0030118||IEA  go_process clathrin coat assembly|GO:0048268||IEA  go_function phospholipid binding|GO:0005543||IEA  go_function phosphatidylinositol binding|GO:0005545||IEA  go_function clathrin binding|GO:0030276||IEA  go_function binding|GO:0005488||ISS  product epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related  note epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related; FUNCTIONS IN: phospholipid binding, clathrin binding, binding, phosphatidylinositol binding; INVOLVED IN: clathrin coat assembly; LOCATED IN: clathrin coat; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942), Clathrin adaptor, phosphoinositide-binding, GAT-like (InterPro:IPR014712); BEST Arabidopsis thaliana protein match is: epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (TAIR:AT4G02650.1); Has 200 Blast hits to 190 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 194; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G33340.1p  transcript_id AT1G33340.1  protein_id AT1G33340.1p  transcript_id AT1G33340.1  
At1g33350	chr1:012090071	0.0	C/12090071-12091687	AT1G33350.1  CDS  gene_syn F10C21.4  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G20540.1); Has 12075 Blast hits to 4865 proteins in 164 species: Archae - 4; Bacteria - 17; Metazoa - 71; Fungi - 42; Plants - 11672; Viruses - 0; Other Eukaryotes - 269 (source: NCBI BLink).  protein_id AT1G33350.1p  transcript_id AT1G33350.1  protein_id AT1G33350.1p  transcript_id AT1G33350.1  
At1g33360	chr1:012092111	0.0	W/12092111-12092923,12093017-12093078,12093196-12093278,12093383-12093462,12093635-12093685,12093772-12093846,12093932-12094009,12094313-12094369,12094465-12094535,12094622-12094721,12094812-12094916,12095098-12095160,12095245-12095367,12095448-12095615,12095748-12095789	AT1G33360.1  CDS  gene_syn F10C21.5  function Encodes ClpX3, a subunit of the Clp protease complex.  go_process protein transport|GO:0015031||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATPase activity|GO:0016887||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATPase activity|GO:0016887||ISS  product ATP-dependent Clp protease ATP-binding subunit ClpX, putative  note ATP-dependent Clp protease ATP-binding subunit ClpX, putative; FUNCTIONS IN: protein binding, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein transport; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase associated with various cellular activities, AAA-2 (InterPro:IPR013093), ClpX, ATPase regulatory subunit (InterPro:IPR004487); BEST Arabidopsis thaliana protein match is: CLPX; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding (TAIR:AT5G53350.1); Has 18801 Blast hits to 16378 proteins in 1734 species: Archae - 422; Bacteria - 8194; Metazoa - 1613; Fungi - 806; Plants - 487; Viruses - 2; Other Eukaryotes - 7277 (source: NCBI BLink).  protein_id AT1G33360.1p  transcript_id AT1G33360.1  protein_id AT1G33360.1p  transcript_id AT1G33360.1  
At1g33370	chr1:012097279	0.0	C/12097279-12097347	AT1G33370.1  tRNA  gene_syn 60723.TRNA-GLY-1, 60730.TRNA-GLY-1, AT1G33375  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: ACC)  transcript_id AT1G33370.1  
At1g33380	chr1:012099096	0.0	C/12099096-12099378	AT1G33380.1  mRNA_TE_gene  pseudo  gene_syn F10C21.24  note Transposable element gene, copia-like retrotransposon family, has a 3.1e-10 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea)  
At1g33390	chr1:012104031	0.0	C/12104031-12104108,12103768-12103940,12103620-12103680,12103233-12103535,12102913-12103125,12102579-12102809,12101212-12102489,12099738-12101114	AT1G33390.1  CDS  gene_syn F10C21.6  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function helicase activity|GO:0004386||ISS  go_function ATP binding|GO:0005524||ISS  product helicase domain-containing protein  note helicase domain-containing protein; FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated region (InterPro:IPR007502), Region of unknown function DUF1605 (InterPro:IPR011709), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: helicase domain-containing protein (TAIR:AT1G48650.2); Has 11093 Blast hits to 6432 proteins in 948 species: Archae - 0; Bacteria - 3704; Metazoa - 3089; Fungi - 1453; Plants - 542; Viruses - 298; Other Eukaryotes - 2007 (source: NCBI BLink).  protein_id AT1G33390.1p  transcript_id AT1G33390.1  protein_id AT1G33390.1p  transcript_id AT1G33390.1  
At1g33400	chr1:012109360	0.0	C/12109360-12109488,12109038-12109259,12108865-12108936,12108593-12108794,12108344-12108474,12107767-12108159,12107543-12107677,12106953-12107084,12106548-12106703,12106202-12106435,12105745-12105911,12105548-12105662,12105329-12105409,12104891-12105118	AT1G33400.1  CDS  gene_syn F10C21.7, F10C21_7  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product tetratricopeptide repeat (TPR)-containing protein  note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), SET (InterPro:IPR001214), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: TTL4 (Tetratricopetide-repeat Thioredoxin-Like 4); binding (TAIR:AT3G58620.1); Has 5453 Blast hits to 4652 proteins in 333 species: Archae - 109; Bacteria - 690; Metazoa - 2585; Fungi - 539; Plants - 720; Viruses - 0; Other Eukaryotes - 810 (source: NCBI BLink).  protein_id AT1G33400.1p  transcript_id AT1G33400.1  protein_id AT1G33400.1p  transcript_id AT1G33400.1  
At1g33410	chr1:012118475	0.0	C/12118475-12118828,12118121-12118385,12117996-12118038,12117656-12117813,12117474-12117559,12117282-12117386,12117058-12117155,12116541-12116658,12116260-12116442,12115947-12116025,12115286-12115851,12114999-12115161,12114636-12114910,12114324-12114511,12113987-12114063,12113501-12113859,12113117-12113185,12112728-12113034,12112488-12112613,12111972-12112080,12111824-12111892,12111595-12111709,12110997-12111104,12110413-12110553,12109920-12110093,12109769-12109813	AT1G33410.1  CDS  gene_syn F10C21.8, F10C21_8, NUCLEOPORIN 160, NUP160, SAR1, suppressor of auxin resistance1  gene SAR1  go_component nuclear membrane|GO:0031965|16751346|IDA  go_process mRNA export from nucleus|GO:0006406|16751346|IGI  go_process response to auxin stimulus|GO:0009733|16751346|IGI  go_process developmental process|GO:0032502|16751346|IMP  product SAR1 (suppressor of auxin resistance1)  note suppressor of auxin resistance1 (SAR1); INVOLVED IN: response to auxin stimulus, mRNA export from nucleus, developmental process; LOCATED IN: nuclear membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 140 Blast hits to 129 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 84; Fungi - 24; Plants - 26; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G33410.1p  transcript_id AT1G33410.1  protein_id AT1G33410.1p  transcript_id AT1G33410.1  
At1g33415	chr1:012118992	0.0	W/12118992-12126593	AT1G33415.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G33420 and AT1G33430  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G33415.1  
At1g33415	chr1:012119004	0.0	W/12119004-12120964	AT1G33415.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G33420 and AT1G33430  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G33415.2  
At1g33420	chr1:012122998	0.0	C/12122998-12123346,12121982-12122894,12121063-12121894	AT1G33420.1  CDS  gene_syn F10C21.9, F10C21_9  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product PHD finger family protein  note PHD finger family protein; FUNCTIONS IN: protein binding, DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: MMD1 (MALE MEIOCYTE DEATH 1); DNA binding / protein binding / zinc ion binding (TAIR:AT1G66170.1); Has 482 Blast hits to 477 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 203; Fungi - 172; Plants - 97; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G33420.1p  transcript_id AT1G33420.1  protein_id AT1G33420.1p  transcript_id AT1G33420.1  
At1g33430	chr1:012125867	0.0	C/12125867-12126052,12125720-12125784,12125393-12125638,12124988-12125287,12124786-12124911,12124438-12124702	AT1G33430.1  CDS  gene_syn F10C21.10, F10C21_10  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process pollen exine formation|GO:0010584||IMP  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product galactosyltransferase family protein  note galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: pollen exine formation; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, 4 leaf senescence stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: galactosyltransferase family protein (TAIR:AT1G32930.1); Has 1151 Blast hits to 1146 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 842; Fungi - 0; Plants - 294; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G33430.1p  transcript_id AT1G33430.1  protein_id AT1G33430.1p  transcript_id AT1G33430.1  
At1g33440	chr1:012130180	0.0	C/12130180-12130327,12129813-12130030,12128957-12129388,12128686-12128804,12127712-12128600	AT1G33440.1  CDS  gene_syn F10C21.11, F10C21_11  go_component plasma membrane|GO:0005886|17317660|IDA  go_process oligopeptide transport|GO:0006857||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT1G59740.1); Has 3899 Blast hits to 3842 proteins in 719 species: Archae - 0; Bacteria - 1749; Metazoa - 425; Fungi - 233; Plants - 1108; Viruses - 0; Other Eukaryotes - 384 (source: NCBI BLink).  protein_id AT1G33440.1p  transcript_id AT1G33440.1  protein_id AT1G33440.1p  transcript_id AT1G33440.1  
At1g33450	chr1:012139228	0.0	W/12139228-12139780	AT1G33450.1  mRNA_TE_gene  pseudo  gene_syn F10C21.12, F10C21_12  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G04780.2); similar to hypothetical protein 26.t00076 [Brassica oleracea] (GB:ABD65021.1)  
At1g33460	chr1:012140012	0.0	C/12140012-12142760	AT1G33460.1  mRNA_TE_gene  pseudo  gene_syn F10C21.13, F10C21_13  note Transposable element gene, Mutator-like transposase family, has a 3.6e-40 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At1g33470	chr1:012144632	0.0	W/12144632-12144787,12144874-12145006,12145353-12145479,12145574-12145610,12145684-12145942,12146015-12146040	AT1G33470.1  CDS  gene_syn F10C21.14, F10C21_14  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT1G22910.2); Has 10255 Blast hits to 8321 proteins in 453 species: Archae - 0; Bacteria - 456; Metazoa - 6140; Fungi - 929; Plants - 1878; Viruses - 0; Other Eukaryotes - 852 (source: NCBI BLink).  protein_id AT1G33470.1p  transcript_id AT1G33470.1  protein_id AT1G33470.1p  transcript_id AT1G33470.1  
At1g33470	chr1:012144632	0.0	W/12144632-12144787,12144874-12145006,12145353-12145479,12145574-12145610,12145687-12145942,12146015-12146040	AT1G33470.2  CDS  gene_syn F10C21.14, F10C21_14  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT1G22910.2); Has 10263 Blast hits to 8337 proteins in 454 species: Archae - 0; Bacteria - 456; Metazoa - 6161; Fungi - 914; Plants - 1873; Viruses - 0; Other Eukaryotes - 859 (source: NCBI BLink).  protein_id AT1G33470.2p  transcript_id AT1G33470.2  protein_id AT1G33470.2p  transcript_id AT1G33470.2  
At1g33475	chr1:012147423	0.0	C/12147423-12148190	AT1G33475.1  CDS  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  product unknown protein  note INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: integral to membrane; EXPRESSED IN: inflorescence meristem, male gametophyte, sepal, carpel, petiole; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: synaptobrevin-related family protein (TAIR:AT4G10170.2); Has 148 Blast hits to 148 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G33475.1p  transcript_id AT1G33475.1  protein_id AT1G33475.1p  transcript_id AT1G33475.1  
At1g33480	chr1:012149909	0.0	C/12149909-12150121,12149715-12149797,12148758-12149247	AT1G33480.1  CDS  gene_syn F10C21.23, F10C21_23  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G10150.1); Has 5980 Blast hits to 5956 proteins in 224 species: Archae - 0; Bacteria - 8; Metazoa - 1978; Fungi - 423; Plants - 2546; Viruses - 58; Other Eukaryotes - 967 (source: NCBI BLink).  protein_id AT1G33480.1p  transcript_id AT1G33480.1  protein_id AT1G33480.1p  transcript_id AT1G33480.1  
At1g33490	chr1:012152200	0.0	C/12152200-12152276,12151834-12151904,12151621-12151726,12151334-12151466,12150941-12151081	AT1G33490.1  CDS  gene_syn F10C21.22, F10C21_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10140.1); Has 42 Blast hits to 42 proteins in 15 species: Archae - 0; Bacteria - 18; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G33490.1p  transcript_id AT1G33490.1  protein_id AT1G33490.1p  transcript_id AT1G33490.1  
At1g33500	chr1:012152774	0.0	W/12152774-12152822,12152904-12152990,12153284-12153417,12153542-12153600,12153686-12153740,12153825-12153872,12153967-12154071,12154268-12154315,12154435-12154680	AT1G33500.1  CDS  gene_syn F10C21.15, F10C21_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, embryo, flower; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: kinase interacting family protein (TAIR:AT3G22790.1); Has 3639 Blast hits to 2952 proteins in 364 species: Archae - 50; Bacteria - 374; Metazoa - 1667; Fungi - 244; Plants - 133; Viruses - 6; Other Eukaryotes - 1165 (source: NCBI BLink).  protein_id AT1G33500.1p  transcript_id AT1G33500.1  protein_id AT1G33500.1p  transcript_id AT1G33500.1  
At1g33510	chr1:012155845	0.0	C/12155845-12156871	AT1G33510.1  pseudogenic_transcript  pseudo  gene_syn F10C21.21  note pseudogene, hypothetical protein  
At1g33520	chr1:012157488	0.0	C/12157488-12158876	AT1G33520.1  CDS  gene_syn F10C21.16, F10C21_16, MOS2, modifier of snc1, 2  gene MOS2  function Has single homolog in Arabidopsis, also homologs in human, mouse and C. elegans; contains one G-patch domain (known to mediate RNA-protein interactions) and two KOW domains (may bind RNA and/or protein); localized to the nucleus; mutant suppresses high SA levels and constitutive disease resistance in snc1 npr1 background; required for basal resistance against Pseudomonas syringae maculicola ES4326 and R gene-mediated resistance specified by RPM1, PPS4 and RPP4;  go_component nucleus|GO:0005634|16271871|IDA  go_process defense response signaling pathway, resistance gene-dependent|GO:0009870|16271871|IMP  go_process defense response to bacterium|GO:0042742|16271871|IMP  go_function nucleic acid binding|GO:0003676||ISS  go_function RNA binding|GO:0003723|16271871|ISS  go_function protein binding|GO:0005515|16271871|ISS  product MOS2 (modifier of snc1, 2); RNA binding / nucleic acid binding / protein binding  note modifier of snc1, 2 (MOS2); FUNCTIONS IN: protein binding, RNA binding, nucleic acid binding; INVOLVED IN: defense response signaling pathway, resistance gene-dependent, defense response to bacterium; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: KOW (InterPro:IPR005824), D111/G-patch (InterPro:IPR000467); BEST Arabidopsis thaliana protein match is: KOW domain-containing protein / D111/G-patch domain-containing protein (TAIR:AT4G25020.1); Has 320 Blast hits to 315 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 180; Fungi - 53; Plants - 48; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT1G33520.1p  transcript_id AT1G33520.1  protein_id AT1G33520.1p  transcript_id AT1G33520.1  
At1g33530	chr1:012159884	0.0	W/12159884-12161126,12161232-12161314	AT1G33530.1  CDS  gene_syn F10C21.17, F10C21_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62380.1); Has 750 Blast hits to 748 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 748; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G33530.1p  transcript_id AT1G33530.1  protein_id AT1G33530.1p  transcript_id AT1G33530.1  
At1g33540	chr1:012164564	0.0	C/12164564-12164700,12164339-12164484,12164192-12164268,12163968-12164090,12163776-12163878,12163653-12163690,12163461-12163562,12163286-12163372,12163048-12163194,12162894-12162965,12162582-12162809,12162349-12162429	AT1G33540.1  CDS  gene_syn F10C21.18, F10C21_18, scpl18, serine carboxypeptidase-like 18  gene scpl18  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl18 (serine carboxypeptidase-like 18); serine-type carboxypeptidase  note serine carboxypeptidase-like 18 (scpl18); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: SCPL7 (SERINE CARBOXYPEPTIDASE-LIKE 7); serine-type carboxypeptidase (TAIR:AT3G10450.1); Has 2574 Blast hits to 2531 proteins in 301 species: Archae - 0; Bacteria - 186; Metazoa - 555; Fungi - 548; Plants - 967; Viruses - 0; Other Eukaryotes - 318 (source: NCBI BLink).  protein_id AT1G33540.1p  transcript_id AT1G33540.1  protein_id AT1G33540.1p  transcript_id AT1G33540.1  
At1g33550	chr1:012166398	0.0	C/12166398-12166621	AT1G33550.1  mRNA_TE_gene  pseudo  gene_syn F10C21.26  note Transposable element gene, pseudogene, hypothetical protein  
At1g33560	chr1:012169092	0.0	W/12169092-12169731,12169801-12170135,12170223-12170578,12170651-12170856,12171052-12171878	AT1G33560.1  CDS  gene_syn ACTIVATED DISEASE RESISTANCE 1, ADR1, F10C21.19  gene ADR1  function Encodes a NBS-LRR disease resistance protein that possesses N-terminal kinase subdomains. Activation tagged mutant of ADR1 showed elevated levels of SA and reactive oxygen species in addition to number of defense gene transcripts. Exhibits resistance to number of microbial pathogens.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_process response to water deprivation|GO:0009414|15144382|IMP  go_process response to other organism|GO:0051707|12906111|IEP  go_function kinase activity|GO:0016301|12906111|TAS  product ADR1 (ACTIVATED DISEASE RESISTANCE 1); kinase  note ACTIVATED DISEASE RESISTANCE 1 (ADR1); FUNCTIONS IN: kinase activity; INVOLVED IN: response to water deprivation, response to other organism, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Disease resistance, plant (InterPro:IPR014011), NB-ARC (InterPro:IPR002182); BEST Arabidopsis thaliana protein match is: ADR1-L2 (ADR1-like 2); ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding (TAIR:AT5G04720.1); Has 11848 Blast hits to 8322 proteins in 363 species: Archae - 20; Bacteria - 601; Metazoa - 799; Fungi - 55; Plants - 10039; Viruses - 0; Other Eukaryotes - 334 (source: NCBI BLink).  protein_id AT1G33560.1p  transcript_id AT1G33560.1  protein_id AT1G33560.1p  transcript_id AT1G33560.1  
At1g33570	chr1:012173002	0.0	C/12173002-12174499	AT1G33570.1  mRNA_TE_gene  pseudo  gene_syn T1E4.5, T1E4_5  note Transposable element gene, CACTA-like transposase family (Tnp1/En/Spm), has a 4.6e-16 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)  
At1g33580	chr1:012174773	0.0	C/12174773-12176059	AT1G33580.1  mRNA_TE_gene  pseudo  gene_syn T1E4.4, T1E4_4  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 5.5e-96 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At1g33590	chr1:012177788	0.0	W/12177788-12179221	AT1G33590.1  CDS  gene_syn T1E4.3, T1E4_3  go_component cell wall|GO:0005618|14595688|IDA  go_component cell wall|GO:0005618|15593128|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process defense response|GO:0006952||ISS  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product disease resistance protein-related / LRR protein-related  note disease resistance protein-related / LRR protein-related; FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction, defense response; LOCATED IN: cell wall, chloroplast, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210); BEST Arabidopsis thaliana protein match is: disease resistance protein-related / LRR protein-related (TAIR:AT2G26380.1); Has 48885 Blast hits to 19332 proteins in 736 species: Archae - 12; Bacteria - 3569; Metazoa - 17245; Fungi - 493; Plants - 24326; Viruses - 2; Other Eukaryotes - 3238 (source: NCBI BLink).  protein_id AT1G33590.1p  transcript_id AT1G33590.1  protein_id AT1G33590.1p  transcript_id AT1G33590.1  
At1g33600	chr1:012180776	0.0	W/12180776-12182212	AT1G33600.1  CDS  gene_syn T1E4.2, T1E4_2  go_component cell wall|GO:0005618|15593128|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: cell wall, membrane, plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein-related / LRR protein-related (TAIR:AT1G33590.1); Has 46343 Blast hits to 18841 proteins in 734 species: Archae - 20; Bacteria - 3127; Metazoa - 15104; Fungi - 467; Plants - 24651; Viruses - 4; Other Eukaryotes - 2970 (source: NCBI BLink).  protein_id AT1G33600.1p  transcript_id AT1G33600.1  protein_id AT1G33600.1p  transcript_id AT1G33600.1  
At1g33607	chr1:012187359	0.0	C/12187359-12187423,12187018-12187198	AT1G33607.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08055.1); Has 10 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G33607.1p  transcript_id AT1G33607.1  protein_id AT1G33607.1p  transcript_id AT1G33607.1  
At1g33610	chr1:012188910	0.0	W/12188910-12190299,12191346-12192679	AT1G33610.1  CDS  gene_syn T1E4.10, T1E4_10  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, root, petiole, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.02 two leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210); BEST Arabidopsis thaliana protein match is: disease resistance protein-related / LRR protein-related (TAIR:AT1G33590.1); Has 79875 Blast hits to 20687 proteins in 757 species: Archae - 36; Bacteria - 5035; Metazoa - 29153; Fungi - 774; Plants - 39232; Viruses - 6; Other Eukaryotes - 5639 (source: NCBI BLink).  protein_id AT1G33610.1p  transcript_id AT1G33610.1  protein_id AT1G33610.1p  transcript_id AT1G33610.1  
At1g33615	chr1:012193325	0.0	C/12193325-12194374	AT1G33615.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G33615.1  
At1g33640	chr1:012195946	0.0	C/12195946-12195970,12195722-12195852	AT1G33640.1  CDS  gene_syn T1E4.1  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G33640.1p  transcript_id AT1G33640.1  protein_id AT1G33640.1p  transcript_id AT1G33640.1  
At1g33660	chr1:012197701	0.0	C/12197701-12198322	AT1G33660.1  pseudogenic_transcript  pseudo  gene_syn T1E4.7  function Pseudogene of AT1G33660; peroxidase family protein  note similar to APX1 (ASCORBATE PEROXIDASE 1) [Arabidopsis thaliana] (TAIR:AT1G07890.8); similar to APX1 (ASCORBATE PEROXIDASE 1) [Arabidopsis thaliana] (TAIR:AT1G07890.7); similar to APX1 (ASCORBATE PEROXIDASE 1) [Arabidopsis thaliana] (TAIR:AT1G07890.6); similar to ascorbate peroxidase [Brassica juncea] (GB:AAN60795.1); similar to ascorbate peroxidase [Glycine max] (GB:AAD20022.1); similar to ascorbate peroxidase [Brassica juncea] (GB:AAN60794.1); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Plant ascorbate peroxidase; (InterPro:IPR002207); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016)  
At1g33670	chr1:012201963	0.0	W/12201963-12203330	AT1G33670.1  CDS  gene_syn F14M2.19, F14M2_19  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein-related / LRR protein-related (TAIR:AT1G33590.1); Has 46599 Blast hits to 18905 proteins in 748 species: Archae - 14; Bacteria - 2266; Metazoa - 17235; Fungi - 587; Plants - 23613; Viruses - 0; Other Eukaryotes - 2884 (source: NCBI BLink).  protein_id AT1G33670.1p  transcript_id AT1G33670.1  protein_id AT1G33670.1p  transcript_id AT1G33670.1  
At1g33680	chr1:012204056	0.0	W/12204056-12204257,12204357-12204880,12204972-12205157,12205259-12205336,12205403-12205474,12205578-12205688,12207164-12208282	AT1G33680.1  CDS  gene_syn F14M2.18, F14M2_18  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product RNA binding / nucleic acid binding  note RNA binding / nucleic acid binding; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT4G10070.1); Has 44280 Blast hits to 25473 proteins in 1107 species: Archae - 50; Bacteria - 4243; Metazoa - 22643; Fungi - 6988; Plants - 3074; Viruses - 316; Other Eukaryotes - 6966 (source: NCBI BLink).  protein_id AT1G33680.1p  transcript_id AT1G33680.1  protein_id AT1G33680.1p  transcript_id AT1G33680.1  
At1g33700	chr1:012213539	0.0	C/12213539-12213571,12213215-12213319,12212983-12213039,12212815-12212885,12212588-12212687,12212403-12212473,12212168-12212295,12211957-12212060,12211814-12211867,12211670-12211725,12211542-12211580,12211302-12211449,12211049-12211224,12210906-12210973,12210728-12210800,12210586-12210647,12209581-12210496,12209211-12209501,12208853-12209144	AT1G33700.1  CDS  gene_syn F14M2.16, F14M2_16  go_component vacuole|GO:0005773|15539469|IDA  go_process sphingolipid metabolic process|GO:0006665||IEA  go_process glucosylceramide catabolic process|GO:0006680||IEA  go_function catalytic activity|GO:0003824||IEA  go_function glucosylceramidase activity|GO:0004348||IEA  product catalytic/ glucosylceramidase  note catalytic/ glucosylceramidase; FUNCTIONS IN: catalytic activity, glucosylceramidase activity; INVOLVED IN: glucosylceramide catabolic process, sphingolipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glucosylceramidase (InterPro:IPR006775), Six-hairpin glycosidase-like (InterPro:IPR008928), Beta-glucosidase, GBA2 type (InterPro:IPR014551); BEST Arabidopsis thaliana protein match is: catalytic/ glucosylceramidase (TAIR:AT4G10060.1); Has 598 Blast hits to 491 proteins in 122 species: Archae - 24; Bacteria - 213; Metazoa - 130; Fungi - 0; Plants - 142; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT1G33700.1p  transcript_id AT1G33700.1  protein_id AT1G33700.1p  transcript_id AT1G33700.1  
At1g33700	chr1:012213539	0.0	C/12213539-12213571,12213215-12213319,12212983-12213039,12212815-12212885,12212588-12212687,12212403-12212473,12212168-12212295,12211957-12212060,12211814-12211867,12211670-12211725,12211542-12211580,12211302-12211449,12211049-12211224,12210906-12210973,12210728-12210800,12210586-12210647,12209581-12210496,12209211-12209501,12208853-12209144	AT1G33700.2  CDS  gene_syn F14M2.16, F14M2_16  go_component vacuole|GO:0005773|15539469|IDA  go_process sphingolipid metabolic process|GO:0006665||IEA  go_process glucosylceramide catabolic process|GO:0006680||IEA  go_function catalytic activity|GO:0003824||IEA  go_function glucosylceramidase activity|GO:0004348||IEA  product catalytic/ glucosylceramidase  note catalytic/ glucosylceramidase; FUNCTIONS IN: glucosylceramidase activity, catalytic activity; INVOLVED IN: glucosylceramide catabolic process, sphingolipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glucosylceramidase (InterPro:IPR006775), Six-hairpin glycosidase-like (InterPro:IPR008928), Beta-glucosidase, GBA2 type (InterPro:IPR014551); BEST Arabidopsis thaliana protein match is: catalytic/ glucosylceramidase (TAIR:AT4G10060.1); Has 598 Blast hits to 491 proteins in 122 species: Archae - 24; Bacteria - 213; Metazoa - 130; Fungi - 0; Plants - 142; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT1G33700.2p  transcript_id AT1G33700.2  protein_id AT1G33700.2p  transcript_id AT1G33700.2  
At1g33709	chr1:012219371	0.0	C/12219371-12219502	AT1G33709.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G33709.1p  transcript_id AT1G33709.1  protein_id AT1G33709.1p  transcript_id AT1G33709.1  
At1g33710	chr1:012219657	0.0	W/12219657-12220289	AT1G33710.1  CDS  gene_syn F14M2.21, F14M2_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G60720.1); Has 337 Blast hits to 335 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 337; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G33710.1p  transcript_id AT1G33710.1  protein_id AT1G33710.1p  transcript_id AT1G33710.1  
At1g33720	chr1:012223587	0.0	C/12223587-12223981,12221650-12222172,12220957-12221574	AT1G33720.1  CDS  gene_syn CYP76C6, F14M2.15, F14M2_15  gene CYP76C6  function member of CYP76C  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP76C6; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP76C6; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP76C4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT2G45550.1); Has 23891 Blast hits to 23729 proteins in 1272 species: Archae - 32; Bacteria - 2203; Metazoa - 10472; Fungi - 4523; Plants - 5717; Viruses - 6; Other Eukaryotes - 938 (source: NCBI BLink).  protein_id AT1G33720.1p  transcript_id AT1G33720.1  protein_id AT1G33720.1p  transcript_id AT1G33720.1  
At1g33730	chr1:012227279	0.0	W/12227279-12227788,12227864-12228460	AT1G33730.1  CDS  gene_syn CYP76C5, CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5, F14M2.14, F14M2_14  gene CYP76C5  function member of CYP76C  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component cellular_component|GO:0005575||ND  go_function oxygen binding|GO:0019825||ISS  product CYP76C5; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP76C5; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP76C6; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G33720.1); Has 24142 Blast hits to 24087 proteins in 1291 species: Archae - 32; Bacteria - 2561; Metazoa - 10276; Fungi - 4650; Plants - 5515; Viruses - 6; Other Eukaryotes - 1102 (source: NCBI BLink).  protein_id AT1G33730.1p  transcript_id AT1G33730.1  protein_id AT1G33730.1p  transcript_id AT1G33730.1  
At1g33740	chr1:012230180	0.0	C/12230180-12230430	AT1G33740.1  pseudogenic_transcript  pseudo  gene_syn F14M2.23  note pseudogene, putative chaperonin 60 beta precursor, similar to chaperonin 60 beta precursor GB:JT0901 GI:81601 from (Arabidopsis thaliana); blastp match of 78% identity and 1.2e-11 P-value to PIR|JT0902|JT0902 chaperonin 60 beta - wheat (fragment)  
At1g33743	chr1:012231684	0.0	W/12231684-12232532	AT1G33743.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G32660; F-box family protein  
At1g33750	chr1:012233769	0.0	W/12233769-12234032,12234112-12234382,12234505-12234880,12235289-12235507,12235586-12235724,12235806-12236348	AT1G33750.1  CDS  gene_syn F14M2.13, F14M2_13  go_process metabolic process|GO:0008152||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function lyase activity|GO:0016829||IEA  product terpene synthase/cyclase family protein  note terpene synthase/cyclase family protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase/cyclase family protein (TAIR:AT3G14490.1); Has 1082 Blast hits to 1068 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1079; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G33750.1p  transcript_id AT1G33750.1  protein_id AT1G33750.1p  transcript_id AT1G33750.1  
At1g33760	chr1:012237944	0.0	W/12237944-12238498	AT1G33760.1  CDS  gene_syn F14M2.12, F14M2_12  function encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: leaf whorl, cotyledon, cauline leaf, leaf, seed; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, LP.12 twelve leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT1G71450.1); Has 3852 Blast hits to 3689 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3843; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G33760.1p  transcript_id AT1G33760.1  protein_id AT1G33760.1p  transcript_id AT1G33760.1  
At1g33770	chr1:012242126	0.0	W/12242126-12242563,12242649-12242933,12243010-12243327,12243413-12243640,12243727-12243827,12243912-12244206,12244283-12244462	AT1G33770.1  CDS  gene_syn F14M2.11, F14M2_11  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G10010.1); Has 90747 Blast hits to 89640 proteins in 3120 species: Archae - 45; Bacteria - 7745; Metazoa - 39938; Fungi - 8474; Plants - 17307; Viruses - 385; Other Eukaryotes - 16853 (source: NCBI BLink).  protein_id AT1G33770.1p  transcript_id AT1G33770.1  protein_id AT1G33770.1p  transcript_id AT1G33770.1  
At1g33780	chr1:012245827	0.0	C/12245827-12246034,12245520-12245644,12244799-12245443	AT1G33780.1  CDS  gene_syn F14M2.10, F14M2_10  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|ISS  product unknown protein  note unknown protein; LOCATED IN: chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF179 (InterPro:IPR003774); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G29240.2); Has 1773 Blast hits to 1773 proteins in 611 species: Archae - 0; Bacteria - 1186; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 522 (source: NCBI BLink).  protein_id AT1G33780.1p  transcript_id AT1G33780.1  protein_id AT1G33780.1p  transcript_id AT1G33780.1  
At1g33785	chr1:012255360	0.0	C/12255360-12256256	AT1G33785.1  pseudogenic_transcript  pseudo  note Cytochrome B6, pseudogene, similar to Cytochrome B6. (Mouse-ear cress) {Arabidopsis thaliana}; blastp match of 61% identity and 7.1e-17 P-value to GP|2959637|gb|AAC05628.1||AF001491 cytochrome b6 {Prochlorococcus marinus str. MIT 9303}  
At1g33790	chr1:012256990	0.0	W/12256990-12257202,12257975-12258233,12258608-12258969,12259069-12259494,12259580-12260032,12260187-12260432	AT1G33790.2  CDS  gene_syn F14M2.9, F14M2_9  go_process biological_process|GO:0008150||ND  product jacalin lectin family protein  note jacalin lectin family protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28520.1).  protein_id AT1G33790.2p  transcript_id AT1G33790.2  protein_id AT1G33790.2p  transcript_id AT1G33790.2  
At1g33790	chr1:012256990	0.0	W/12256990-12257202,12259069-12259494,12259580-12260032,12260187-12260432	AT1G33790.1  CDS  gene_syn F14M2.9, F14M2_9  go_component chloroplast|GO:0009507|15028209|IDA  go_process biological_process|GO:0008150||ND  product jacalin lectin family protein  note jacalin lectin family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28520.1); Has 1178 Blast hits to 465 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1176; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G33790.1p  transcript_id AT1G33790.1  protein_id AT1G33790.1p  transcript_id AT1G33790.1  
At1g33800	chr1:012261480	0.0	W/12261480-12261870,12261954-12262456	AT1G33800.1  CDS  gene_syn F14M2.8, F14M2_8  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579, plant (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09990.1); Has 160 Blast hits to 160 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G33800.1p  transcript_id AT1G33800.1  protein_id AT1G33800.1p  transcript_id AT1G33800.1  
At1g33810	chr1:012265084	0.0	W/12265084-12265311,12266291-12266405,12266582-12266655	AT1G33810.1  CDS  gene_syn F14M2.27  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 23 Blast hits to 23 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G33810.1p  transcript_id AT1G33810.1  protein_id AT1G33810.1p  transcript_id AT1G33810.1  
At1g33811	chr1:012267918	0.0	W/12267918-12268066,12268152-12268255,12268562-12268686,12268790-12269038,12269128-12269395,12269473-12269690	AT1G33811.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT5G45670.1); Has 1790 Blast hits to 1774 proteins in 159 species: Archae - 0; Bacteria - 229; Metazoa - 1; Fungi - 3; Plants - 1540; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G33811.1p  transcript_id AT1G33811.1  protein_id AT1G33811.1p  transcript_id AT1G33811.1  
At1g33813	chr1:012273243	0.0	C/12273243-12274646	AT1G33813.1  mRNA_TE_gene  pseudo  gene_syn F14M2.6, F14M2_6  note Transposable element gene, copia-like retrotransposon family, has a 5.8e-39 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At1g33817	chr1:012274982	0.0	C/12274982-12276763	AT1G33817.1  mRNA_TE_gene  pseudo  gene_syn F14M2.5, F14M2_5  note Transposable element gene, copia-like retrotransposon family, has a 8.1e-100 P-value blast match to gb|AAO73521.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At1g33820	chr1:012279392	0.0	C/12279392-12279451,12279221-12279298,12279016-12279126,12278821-12278931,12278623-12278712,12278438-12278536	AT1G33820.1  CDS  gene_syn F14M2.4, F14M2_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 39 Blast hits to 37 proteins in 21 species: Archae - 0; Bacteria - 8; Metazoa - 17; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G33820.1p  transcript_id AT1G33820.1  protein_id AT1G33820.1p  transcript_id AT1G33820.1  
At1g33830	chr1:012281208	0.0	C/12281208-12281406,12280735-12281012,12280465-12280629,12279947-12279982	AT1G33830.1  CDS  gene_syn F14M2.25, F14M2_25  go_function GTP binding|GO:0005525||IEA  go_component cellular_component|GO:0005575||ND  go_process response to bacterium|GO:0009617||ISS  product avirulence-responsive family protein / avirulence induced gene (AIG1) family protein  note avirulence-responsive family protein / avirulence induced gene (AIG1) family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: response to bacterium; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703); BEST Arabidopsis thaliana protein match is: ATPP2-A3 (Phloem protein 2-A3); carbohydrate binding (TAIR:AT2G26820.1); Has 917 Blast hits to 773 proteins in 52 species: Archae - 0; Bacteria - 16; Metazoa - 671; Fungi - 0; Plants - 172; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT1G33830.1p  transcript_id AT1G33830.1  protein_id AT1G33830.1p  transcript_id AT1G33830.1  
At1g33835	chr1:012281847	0.0	W/12281847-12282297	AT1G33835.1  mRNA_TE_gene  pseudo  gene_syn F14M2.24  note Transposable element gene, copia-like retrotransposon family, has a 2.9e-12 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element)  
At1g33840	chr1:012285290	0.0	C/12285290-12285293,12285025-12285230,12284702-12284929,12284066-12284176,12283862-12283933	AT1G33840.1  CDS  gene_syn F14M2.3, F14M2_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, sperm cell, root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01750.2); Has 170 Blast hits to 170 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 164; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G33840.1p  transcript_id AT1G33840.1  protein_id AT1G33840.1p  transcript_id AT1G33840.1  
At1g33850	chr1:012288068	0.0	C/12288068-12288210,12287913-12287982	AT1G33850.1  CDS  gene_syn T3M13.13  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S15, putative  note 40S ribosomal protein S15, putative; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome; CONTAINS InterPro DOMAIN/s: Ribosomal protein S15, eukaryotic/archaeal (InterPro:IPR005713), Ribosomal protein S19/S15 (InterPro:IPR002222); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S15 (RPS15E) (TAIR:AT5G43640.1); Has 544 Blast hits to 544 proteins in 214 species: Archae - 31; Bacteria - 0; Metazoa - 191; Fungi - 93; Plants - 148; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).  protein_id AT1G33850.1p  transcript_id AT1G33850.1  protein_id AT1G33850.1p  transcript_id AT1G33850.1  
At1g33855	chr1:012291258	0.0	W/12291258-12292501	AT1G33855.1  mRNA_TE_gene  pseudo  gene_syn T3M13.12  note Transposable element gene, Mutator-like transposase family, has a 1.7e-18 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g33860	chr1:012294394	0.0	W/12294394-12294604,12294683-12294773,12295146-12295305	AT1G33860.1  CDS  gene_syn T3M13.25  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G33860.1p  transcript_id AT1G33860.1  protein_id AT1G33860.1p  transcript_id AT1G33860.1  
At1g33870	chr1:012302365	0.0	C/12302365-12302467,12301966-12302243,12301715-12301879,12301491-12301619,12301325-12301408	AT1G33870.1  CDS  gene_syn T3M13.11, T3M13_11  go_function GTP binding|GO:0005525||IEA  go_component cellular_component|GO:0005575||ND  go_process response to bacterium|GO:0009617||ISS  product avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative  note avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative; FUNCTIONS IN: GTP binding; INVOLVED IN: response to bacterium; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, root, seed; EXPRESSED DURING: F mature embryo stage; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703); BEST Arabidopsis thaliana protein match is: avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative (TAIR:AT1G33900.1); Has 753 Blast hits to 636 proteins in 40 species: Archae - 0; Bacteria - 2; Metazoa - 632; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G33870.1p  transcript_id AT1G33870.1  protein_id AT1G33870.1p  transcript_id AT1G33870.1  
At1g33880	chr1:012304680	0.0	C/12304680-12304911,12304178-12304449,12303862-12304062	AT1G33880.1  CDS  gene_syn T3M13.10, T3M13_10  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function GTP binding|GO:0005525||IEA  go_component cellular_component|GO:0005575||ND  go_process response to bacterium|GO:0009617||ISS  product avirulence-responsive family protein / avirulence induced gene (AIG1) family protein  note avirulence-responsive family protein / avirulence induced gene (AIG1) family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: N-terminal protein myristoylation, response to bacterium; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703); BEST Arabidopsis thaliana protein match is: avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative (TAIR:AT1G33900.1); Has 747 Blast hits to 608 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 641; Fungi - 0; Plants - 102; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G33880.1p  transcript_id AT1G33880.1  protein_id AT1G33880.1p  transcript_id AT1G33880.1  
At1g33890	chr1:012309473	0.0	C/12309473-12309686,12309066-12309343,12308805-12308969,12308581-12308712,12308284-12308499	AT1G33890.1  CDS  gene_syn T3M13.9, T3M13_9  go_function GTP binding|GO:0005525||IEA  go_component cellular_component|GO:0005575||ND  go_process response to bacterium|GO:0009617||ISS  product avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative  note avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative; FUNCTIONS IN: GTP binding; INVOLVED IN: response to bacterium; LOCATED IN: cellular_component unknown; EXPRESSED IN: pedicel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703); BEST Arabidopsis thaliana protein match is: avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative (TAIR:AT1G33900.1); Has 1082 Blast hits to 920 proteins in 65 species: Archae - 0; Bacteria - 34; Metazoa - 691; Fungi - 10; Plants - 174; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).  protein_id AT1G33890.1p  transcript_id AT1G33890.1  protein_id AT1G33890.1p  transcript_id AT1G33890.1  
At1g33900	chr1:012313287	0.0	C/12313287-12313518,12312326-12312603,12312051-12312215,12311831-12311962,12311518-12311691	AT1G33900.1  CDS  gene_syn T3M13.8, T3M13_8  go_function GTP binding|GO:0005525||IEA  go_process response to bacterium|GO:0009617||ISS  product avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative  note avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative; FUNCTIONS IN: GTP binding; INVOLVED IN: response to bacterium; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703); BEST Arabidopsis thaliana protein match is: avirulence-responsive family protein / avirulence induced gene (AIG1) family protein (TAIR:AT1G33930.1); Has 1047 Blast hits to 890 proteins in 69 species: Archae - 0; Bacteria - 49; Metazoa - 707; Fungi - 6; Plants - 180; Viruses - 2; Other Eukaryotes - 103 (source: NCBI BLink).  protein_id AT1G33900.1p  transcript_id AT1G33900.1  protein_id AT1G33900.1p  transcript_id AT1G33900.1  
At1g33910	chr1:012314904	0.0	W/12314904-12315099,12315278-12315555,12315647-12315814,12315914-12316045,12316127-12316258	AT1G33910.1  CDS  gene_syn T3M13.7, T3M13_7  go_function GTP binding|GO:0005525||IEA  go_process response to bacterium|GO:0009617||ISS  product avirulence-responsive family protein / avirulence induced gene (AIG1) family protein  note avirulence-responsive family protein / avirulence induced gene (AIG1) family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: response to bacterium; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703); BEST Arabidopsis thaliana protein match is: avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative (TAIR:AT1G33900.1); Has 989 Blast hits to 830 proteins in 54 species: Archae - 5; Bacteria - 7; Metazoa - 700; Fungi - 5; Plants - 148; Viruses - 3; Other Eukaryotes - 121 (source: NCBI BLink).  protein_id AT1G33910.1p  transcript_id AT1G33910.1  protein_id AT1G33910.1p  transcript_id AT1G33910.1  
At1g33920	chr1:012319905	0.0	W/12319905-12320026,12320495-12320870	AT1G33920.1  CDS  gene_syn ATPP2-A4, Phloem protein 2-A4, T3M13.6, T3M13_6  gene ATPP2-A4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function carbohydrate binding|GO:0030246|12529520|ISS  product ATPP2-A4 (Phloem protein 2-A4); carbohydrate binding  note Phloem protein 2-A4 (ATPP2-A4); FUNCTIONS IN: carbohydrate binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ATPP2-A1; carbohydrate binding (TAIR:AT4G19840.1); Has 242 Blast hits to 242 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 242; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G33920.1p  transcript_id AT1G33920.1  protein_id AT1G33920.1p  transcript_id AT1G33920.1  
At1g33925	chr1:012322574	0.0	W/12322574-12322753	AT1G33925.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G33925.1p  transcript_id AT1G33925.1  protein_id AT1G33925.1p  transcript_id AT1G33925.1  
At1g33930	chr1:012323888	0.0	W/12323888-12324167,12326065-12326342,12326423-12326587,12326693-12326824,12326929-12327084	AT1G33930.1  CDS  gene_syn T3M13.5, T3M13_5  go_function GTP binding|GO:0005525||IEA  go_process response to bacterium|GO:0009617||ISS  product avirulence-responsive family protein / avirulence induced gene (AIG1) family protein  note avirulence-responsive family protein / avirulence induced gene (AIG1) family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: response to bacterium; EXPRESSED IN: leaf lamina base, pedicel, petiole, leaf; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703); BEST Arabidopsis thaliana protein match is: avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative (TAIR:AT1G33900.1); Has 988 Blast hits to 835 proteins in 62 species: Archae - 0; Bacteria - 35; Metazoa - 694; Fungi - 8; Plants - 150; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT1G33930.1p  transcript_id AT1G33930.1  protein_id AT1G33930.1p  transcript_id AT1G33930.1  
At1g33940	chr1:012332494	0.0	C/12332494-12332785,12331848-12332413,12330924-12331559	AT1G33940.1  CDS  gene_syn T3M13.4, T3M13_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: EMB3013 (embryo defective 3013); ATP binding / binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G18700.1); Has 81 Blast hits to 63 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 32; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G33940.1p  transcript_id AT1G33940.1  protein_id AT1G33940.1p  transcript_id AT1G33940.1  
At1g33940	chr1:012332494	0.0	C/12332494-12332785,12331848-12332413,12330924-12331559	AT1G33940.2  CDS  gene_syn T3M13.4, T3M13_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: EMB3013 (embryo defective 3013); ATP binding / binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G18700.1).  protein_id AT1G33940.2p  transcript_id AT1G33940.2  protein_id AT1G33940.2p  transcript_id AT1G33940.2  
At1g33950	chr1:012338960	0.0	C/12338960-12339182,12338583-12338860,12333471-12333635,12333263-12333394,12333046-12333183	AT1G33950.1  CDS  go_function GTP binding|GO:0005525||IEA  go_process response to bacterium|GO:0009617||ISS  product avirulence-responsive family protein / avirulence induced gene (AIG1) family protein  note avirulence-responsive family protein / avirulence induced gene (AIG1) family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: response to bacterium; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703); BEST Arabidopsis thaliana protein match is: AIG1 (AVRRPT2-INDUCED GENE 1); GTP binding (TAIR:AT1G33960.1); Has 1438 Blast hits to 1274 proteins in 167 species: Archae - 0; Bacteria - 196; Metazoa - 778; Fungi - 34; Plants - 201; Viruses - 3; Other Eukaryotes - 226 (source: NCBI BLink).  protein_id AT1G33950.1p  transcript_id AT1G33950.1  protein_id AT1G33950.1p  transcript_id AT1G33950.1  
At1g33960	chr1:012346555	0.0	W/12346555-12346855,12347157-12347434,12347523-12347687,12347779-12347910,12347999-12348184	AT1G33960.1  CDS  gene_syn AIG1, AVRRPT2-INDUCED GENE 1, F12G12.27  gene AIG1  function Identified as a gene that is induced by avirulence gene avrRpt2 and RPS2 after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2  go_function GTP binding|GO:0005525||IEA  go_process response to bacterium|GO:0009617|8742710|IEP  go_process response to bacterium|GO:0009617||ISS  product AIG1 (AVRRPT2-INDUCED GENE 1); GTP binding  note AVRRPT2-INDUCED GENE 1 (AIG1); FUNCTIONS IN: GTP binding; INVOLVED IN: response to bacterium; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703); BEST Arabidopsis thaliana protein match is: avirulence-responsive family protein / avirulence induced gene (AIG1) family protein (TAIR:AT1G33930.1); Has 4315 Blast hits to 3021 proteins in 264 species: Archae - 16; Bacteria - 231; Metazoa - 1717; Fungi - 159; Plants - 174; Viruses - 13; Other Eukaryotes - 2005 (source: NCBI BLink).  protein_id AT1G33960.1p  transcript_id AT1G33960.1  protein_id AT1G33960.1p  transcript_id AT1G33960.1  
At1g33970	chr1:012350714	0.0	C/12350714-12350960,12350354-12350628,12350114-12350278,12349890-12350033	AT1G33970.3  CDS  gene_syn F12G12.21, F12G12_21  go_function GTP binding|GO:0005525||IEA  go_component cellular_component|GO:0005575||ND  go_process response to bacterium|GO:0009617||ISS  product avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative  note avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative; FUNCTIONS IN: GTP binding; INVOLVED IN: response to bacterium; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703); BEST Arabidopsis thaliana protein match is: AIG1 (AVRRPT2-INDUCED GENE 1); GTP binding (TAIR:AT1G33960.1); Has 1030 Blast hits to 862 proteins in 67 species: Archae - 0; Bacteria - 66; Metazoa - 701; Fungi - 1; Plants - 139; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).  protein_id AT1G33970.3p  transcript_id AT1G33970.3  protein_id AT1G33970.3p  transcript_id AT1G33970.3  
At1g33970	chr1:012350714	0.0	C/12350714-12350960,12350354-12350628,12350114-12350278,12349899-12350033,12349614-12349820	AT1G33970.1  CDS  gene_syn F12G12.21, F12G12_21  go_function GTP binding|GO:0005525||IEA  go_component cellular_component|GO:0005575||ND  go_process response to bacterium|GO:0009617||ISS  product avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative  note avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative; FUNCTIONS IN: GTP binding; INVOLVED IN: response to bacterium; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703); BEST Arabidopsis thaliana protein match is: avirulence-responsive family protein / avirulence induced gene (AIG1) family protein (TAIR:AT4G09950.1); Has 4589 Blast hits to 3672 proteins in 372 species: Archae - 68; Bacteria - 429; Metazoa - 1800; Fungi - 198; Plants - 186; Viruses - 30; Other Eukaryotes - 1878 (source: NCBI BLink).  protein_id AT1G33970.1p  transcript_id AT1G33970.1  protein_id AT1G33970.1p  transcript_id AT1G33970.1  
At1g33970	chr1:012350714	0.0	C/12350714-12350960,12350354-12350628,12350114-12350278,12349899-12350033,12349614-12349820	AT1G33970.2  CDS  gene_syn F12G12.21, F12G12_21  go_function GTP binding|GO:0005525||IEA  go_component cellular_component|GO:0005575||ND  go_process response to bacterium|GO:0009617||ISS  product avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative  note avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative; FUNCTIONS IN: GTP binding; INVOLVED IN: response to bacterium; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703); BEST Arabidopsis thaliana protein match is: avirulence-responsive family protein / avirulence induced gene (AIG1) family protein (TAIR:AT4G09950.1); Has 4589 Blast hits to 3672 proteins in 372 species: Archae - 68; Bacteria - 429; Metazoa - 1800; Fungi - 198; Plants - 186; Viruses - 30; Other Eukaryotes - 1878 (source: NCBI BLink).  protein_id AT1G33970.2p  transcript_id AT1G33970.2  protein_id AT1G33970.2p  transcript_id AT1G33970.2  
At1g33970	chr1:012350714	0.0	C/12350714-12350960,12350354-12350628,12350114-12350278,12349899-12350033,12349614-12349820	AT1G33970.4  CDS  gene_syn F12G12.21, F12G12_21  go_function GTP binding|GO:0005525||IEA  go_component cellular_component|GO:0005575||ND  go_process response to bacterium|GO:0009617||ISS  product avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative  note avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative; FUNCTIONS IN: GTP binding; INVOLVED IN: response to bacterium; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703); BEST Arabidopsis thaliana protein match is: avirulence-responsive family protein / avirulence induced gene (AIG1) family protein (TAIR:AT4G09950.1); Has 4589 Blast hits to 3672 proteins in 372 species: Archae - 68; Bacteria - 429; Metazoa - 1800; Fungi - 198; Plants - 186; Viruses - 30; Other Eukaryotes - 1878 (source: NCBI BLink).  protein_id AT1G33970.4p  transcript_id AT1G33970.4  protein_id AT1G33970.4p  transcript_id AT1G33970.4  
At1g33980	chr1:012351719	0.0	W/12351719-12351858,12352106-12352212,12352311-12352505,12352614-12352693,12352839-12352937,12353021-12353141,12353238-12353338,12353437-12353668,12353750-12353881,12353969-12354055,12354161-12354276,12354363-12354401	AT1G33980.1  CDS  gene_syn ATUPF3, F12G12.20, F12G12_20, UPF3  gene UPF3  function Involved in mRNA surveillance, detects exported mRNAs with truncated open reading frames and initiates nonsense-mediated mRNA decay (NMD)  go_function nucleotide binding|GO:0000166||IEA  go_component cellular_component|GO:0005575||ND  go_process nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|GO:0000184|16098107|IMP  go_process nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|GO:0000184|16813578|IGI  product Smg-4/UPF3 family protein  note UPF3; FUNCTIONS IN: nucleotide binding; INVOLVED IN: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Regulator of nonsense-mediated decay, UPF3 (InterPro:IPR005120); Has 613 Blast hits to 589 proteins in 135 species: Archae - 0; Bacteria - 12; Metazoa - 370; Fungi - 96; Plants - 38; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).  protein_id AT1G33980.1p  transcript_id AT1G33980.1  protein_id AT1G33980.1p  transcript_id AT1G33980.1  
At1g33980	chr1:012351719	0.0	W/12351719-12351864,12352106-12352212,12352311-12352505,12352614-12352693,12352839-12352937,12353021-12353141,12353238-12353338,12353437-12353668,12353750-12353881,12353969-12354055,12354161-12354276,12354363-12354401	AT1G33980.2  CDS  gene_syn ATUPF3, F12G12.20, F12G12_20, UPF3  gene UPF3  function Involved in mRNA surveillance, detects exported mRNAs with truncated open reading frames and initiates nonsense-mediated mRNA decay (NMD)  go_function nucleotide binding|GO:0000166||IEA  go_component cellular_component|GO:0005575||ND  go_process nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|GO:0000184|16098107|IMP  go_process nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|GO:0000184|16813578|IGI  product Smg-4/UPF3 family protein  note UPF3; FUNCTIONS IN: nucleotide binding; INVOLVED IN: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Regulator of nonsense-mediated decay, UPF3 (InterPro:IPR005120); Has 588 Blast hits to 571 proteins in 134 species: Archae - 0; Bacteria - 10; Metazoa - 357; Fungi - 91; Plants - 41; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT1G33980.2p  transcript_id AT1G33980.2  protein_id AT1G33980.2p  transcript_id AT1G33980.2  
At1g33990	chr1:012355909	0.0	W/12355909-12356163,12356823-12357062,12357147-12357290,12357394-12357528,12357622-12357894	AT1G33990.1  CDS  gene_syn ATMES14, F12G12.19, F12G12_19, MES14, METHYL ESTERASE 14  gene MES14  function Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function hydrolase activity|GO:0016787||ISS  product MES14 (METHYL ESTERASE 14); hydrolase  note METHYL ESTERASE 14 (MES14); FUNCTIONS IN: hydrolase activity; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: MES12 (METHYL ESTERASE 12); hydrolase (TAIR:AT4G09900.1); Has 1295 Blast hits to 1295 proteins in 282 species: Archae - 0; Bacteria - 614; Metazoa - 3; Fungi - 23; Plants - 338; Viruses - 0; Other Eukaryotes - 317 (source: NCBI BLink).  protein_id AT1G33990.1p  transcript_id AT1G33990.1  protein_id AT1G33990.1p  transcript_id AT1G33990.1  
At1g34000	chr1:012358499	0.0	C/12358499-12358902,12358151-12358265	AT1G34000.1  CDS  gene_syn OHP2, ONE-HELIX PROTEIN 2  gene OHP2  function Encodes a novel member of the Lhc family from Arabidopsis with one predicted transmembrane alpha-helix closely related to helix I of Lhc protein from PSI (Lhca4). Gene expression is triggered by light stress and both transcript and protein accumulate in a light intensity-dependent manner. Ohp2 is associated with PSI under low- or high-light conditions.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast thylakoid membrane|GO:0009535|12805611|IDA  go_process response to light intensity|GO:0009642|12805611|IEP  go_function molecular_function|GO:0003674||ND  product OHP2 (ONE-HELIX PROTEIN 2)  note ONE-HELIX PROTEIN 2 (OHP2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to light intensity; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 140 Blast hits to 128 proteins in 40 species: Archae - 0; Bacteria - 5; Metazoa - 24; Fungi - 2; Plants - 42; Viruses - 16; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT1G34000.1p  transcript_id AT1G34000.1  protein_id AT1G34000.1p  transcript_id AT1G34000.1  
At1g34010	chr1:012360360	0.0	C/12360360-12360838,12359821-12359890	AT1G34010.1  CDS  gene_syn F12G12.17, F12G12_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22790.2); Has 42 Blast hits to 42 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G34010.1p  transcript_id AT1G34010.1  protein_id AT1G34010.1p  transcript_id AT1G34010.1  
At1g34020	chr1:012367359	0.0	W/12367359-12367488,12367576-12367760,12367841-12368041,12368128-12368289,12368636-12368965	AT1G34020.1  CDS  gene_syn F12G12.16, F12G12_16  go_component plasma membrane|GO:0005886|14506206|IDA  go_component membrane|GO:0016020|11152613|ISS  product transporter-related  note transporter-related; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: transporter-related (TAIR:AT4G09810.1); Has 1063 Blast hits to 1058 proteins in 139 species: Archae - 0; Bacteria - 4; Metazoa - 324; Fungi - 135; Plants - 477; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).  protein_id AT1G34020.1p  transcript_id AT1G34020.1  protein_id AT1G34020.1p  transcript_id AT1G34020.1  
At1g34030	chr1:012371463	0.0	C/12371463-12371465,12371037-12371197,12370492-12370680,12370285-12370390	AT1G34030.1  CDS  gene_syn F12G12.15, F12G12_15  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component small ribosomal subunit|GO:0015935||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S18 (RPS18B)  note 40S ribosomal protein S18 (RPS18B); FUNCTIONS IN: structural constituent of ribosome, RNA binding, nucleic acid binding; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13-like, H2TH (InterPro:IPR010979), Ribosomal protein S13, conserved site (InterPro:IPR018269), Ribosomal protein S13 (InterPro:IPR001892); BEST Arabidopsis thaliana protein match is: RPS18C (S18 RIBOSOMAL PROTEIN); RNA binding / nucleic acid binding / structural constituent of ribosome (TAIR:AT4G09800.1); Has 5326 Blast hits to 5326 proteins in 1715 species: Archae - 163; Bacteria - 2773; Metazoa - 291; Fungi - 107; Plants - 309; Viruses - 0; Other Eukaryotes - 1683 (source: NCBI BLink).  protein_id AT1G34030.1p  transcript_id AT1G34030.1  protein_id AT1G34030.1p  transcript_id AT1G34030.1  
At1g34040	chr1:012374433	0.0	W/12374433-12374713,12374807-12375104,12375192-12375490,12375596-12375876,12375965-12376179	AT1G34040.1  CDS  gene_syn F12G12.14, F12G12_14  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function carbon-sulfur lyase activity|GO:0016846||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_process biological_process|GO:0008150||ND  go_function carbon-sulfur lyase activity|GO:0016846||ISS  product alliinase family protein  note alliinase family protein; FUNCTIONS IN: pyridoxal phosphate binding, carbon-sulfur lyase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), EGF-like, alliinase (InterPro:IPR006947), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Allinase, C-terminal (InterPro:IPR006948); BEST Arabidopsis thaliana protein match is: alliinase family protein (TAIR:AT1G34060.1); Has 177 Blast hits to 177 proteins in 43 species: Archae - 8; Bacteria - 35; Metazoa - 0; Fungi - 4; Plants - 121; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G34040.1p  transcript_id AT1G34040.1  protein_id AT1G34040.1p  transcript_id AT1G34040.1  
At1g34041	chr1:012378033	0.0	W/12378033-12378188	AT1G34041.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G34041.1p  transcript_id AT1G34041.1  protein_id AT1G34041.1p  transcript_id AT1G34041.1  
At1g34042	chr1:012379427	0.0	C/12379427-12379687	AT1G34042.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G34042.1p  transcript_id AT1G34042.1  protein_id AT1G34042.1p  transcript_id AT1G34042.1  
At1g34044	chr1:012386219	0.0	W/12386219-12387342	AT1G34044.1  pseudogenic_transcript  pseudo  function unknown pseudogene  
At1g34046	chr1:012388673	0.0	W/12388673-12388933,12389227-12389259	AT1G34046.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT1G34050.1).  protein_id AT1G34046.1p  transcript_id AT1G34046.1  protein_id AT1G34046.1p  transcript_id AT1G34046.1  
At1g34047	chr1:012390773	0.0	C/12390773-12390839,12390494-12390675	AT1G34047.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G59930.1); Has 13 Blast hits to 13 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G34047.1p  transcript_id AT1G34047.1  protein_id AT1G34047.1p  transcript_id AT1G34047.1  
At1g34050	chr1:012393495	0.0	W/12393495-12393984,12394521-12394936,12395191-12396006	AT1G34050.1  CDS  gene_syn F12G12.13, F12G12_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT5G54710.1); Has 17720 Blast hits to 9272 proteins in 363 species: Archae - 14; Bacteria - 889; Metazoa - 10920; Fungi - 930; Plants - 1344; Viruses - 58; Other Eukaryotes - 3565 (source: NCBI BLink).  protein_id AT1G34050.1p  transcript_id AT1G34050.1  protein_id AT1G34050.1p  transcript_id AT1G34050.1  
At1g34060	chr1:012398016	0.0	C/12398016-12398299,12397621-12397921,12397244-12397542,12396877-12397157,12396561-12396787	AT1G34060.1  CDS  gene_syn F12G12.12, F12G12_12  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function carbon-sulfur lyase activity|GO:0016846||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_function carbon-sulfur lyase activity|GO:0016846||ISS  product alliinase family protein  note alliinase family protein; FUNCTIONS IN: carbon-sulfur lyase activity, pyridoxal phosphate binding, catalytic activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), EGF-like, alliinase (InterPro:IPR006947), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Allinase, C-terminal (InterPro:IPR006948); BEST Arabidopsis thaliana protein match is: alliinase family protein (TAIR:AT1G34040.1); Has 137 Blast hits to 137 proteins in 28 species: Archae - 5; Bacteria - 7; Metazoa - 0; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G34060.1p  transcript_id AT1G34060.1  protein_id AT1G34060.1p  transcript_id AT1G34060.1  
At1g34065	chr1:012400965	0.0	C/12400965-12401036,12400829-12400883,12400563-12400673,12400394-12400476,12400185-12400261,12399993-12400083,12399724-12399777,12399547-12399642,12399329-12399418,12399129-12399242,12398928-12399008,12398717-12398830	AT1G34065.1  CDS  gene_syn S-adenosylmethionine carrier 2, SAMC2  gene SAMC2  go_component mitochondrial inner membrane|GO:0005743||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function binding|GO:0005488||ISS  product SAMC2 (S-adenosylmethionine carrier 2); binding  note S-adenosylmethionine carrier 2 (SAMC2); FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: SAMC1 (S-ADENOSYLMETHIONINE CARRIER 1); S-adenosylmethionine transmembrane transporter/ binding (TAIR:AT4G39460.1); Has 20319 Blast hits to 10211 proteins in 358 species: Archae - 0; Bacteria - 0; Metazoa - 10075; Fungi - 5649; Plants - 2741; Viruses - 0; Other Eukaryotes - 1854 (source: NCBI BLink).  protein_id AT1G34065.1p  transcript_id AT1G34065.1  protein_id AT1G34065.1p  transcript_id AT1G34065.1  
At1g34070	chr1:012402283	0.0	W/12402283-12403209	AT1G34070.1  CDS  gene_syn F12G12.10, F12G12_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 558 Blast hits to 556 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 25; Plants - 520; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G34070.1p  transcript_id AT1G34070.1  protein_id AT1G34070.1p  transcript_id AT1G34070.1  
At1g34080	chr1:012403277	0.0	C/12403277-12406628	AT1G34080.1  mRNA_TE_gene  pseudo  gene_syn F12G12.130, F12G12_130  note Transposable element gene, gypsy-like retrotransposon family, has a 4.0e-88 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At1g34090	chr1:012407268	0.0	W/12407268-12409879	AT1G34090.1  mRNA_TE_gene  pseudo  gene_syn F12G12.9, F12G12_9  note Transposable element gene, copia-like retrotransposon family, has a 8.8e-131 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element)  
At1g34095	chr1:012412497	0.0	C/12412497-12412514,12412185-12412403,12411804-12412133,12411670-12411714	AT1G34095.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45403.1); Has 11 Blast hits to 11 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G34095.1p  transcript_id AT1G34095.1  protein_id AT1G34095.1p  transcript_id AT1G34095.1  
At1g34097	chr1:012412782	0.0	W/12412782-12415386	AT1G34097.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.3e-158 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)  
At1g34100	chr1:012415544	0.0	W/12415544-12417172	AT1G34100.1  pseudogenic_transcript  pseudo  gene_syn F12G12.29, F12G12_29  note choline kinase, putative, similar to choline kinase (GmCK2p) GI:1438881 from (Glycine max); contains Pfam profile PF01633: Choline/ethanolamine kinase; could not find a suitable start codon; this may be a pseudogene, a transposon insertion is found immediately upstream.  
At1g34110	chr1:012418429	0.0	C/12418429-12421189,12417331-12417707	AT1G34110.1  CDS  gene_syn F12G12.7, F12G12_7  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT3G24240.1); Has 157184 Blast hits to 86823 proteins in 2509 species: Archae - 91; Bacteria - 10859; Metazoa - 61621; Fungi - 6323; Plants - 58385; Viruses - 359; Other Eukaryotes - 19546 (source: NCBI BLink).  protein_id AT1G34110.1p  transcript_id AT1G34110.1  protein_id AT1G34110.1p  transcript_id AT1G34110.1  
At1g34120	chr1:012426831	0.0	W/12426831-12426866,12426969-12427116,12427195-12427245,12427376-12427445,12427622-12427726,12427812-12428532,12428613-12428803,12428880-12428988,12429107-12429249,12429340-12429526	AT1G34120.1  CDS  gene_syn AT5P1, AT5PTASE1, ATIP5PI, F12G12.6, F12G12_6, INOSITOL POLYPHOSPHATE 5-PHOSPHATASE AT5P1, INOSITOL POLYPHOSPHATE 5-PHOSPHATASE I, IP5PI, MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1  gene IP5PI  function Encodes an inositol polyphosphate 5-phosphatase that appears to have Type I activity. It can dephosphorylate IP3(inositol(1,4,5)P3) and IP4 (inositol(1,3,4,5)P4), but it does not act on I(1)P, I(1,4)P2, or phosphatidylinositol(4,5)P2.  go_process inositol trisphosphate metabolic process|GO:0032957|11402208|IDA  go_process inositol phosphate dephosphorylation|GO:0046855|11402208|IDA  go_function inositol-polyphosphate 5-phosphatase activity|GO:0004445|11402208|IDA  go_function inositol-polyphosphate 5-phosphatase activity|GO:0004445||ISS  go_function inositol trisphosphate phosphatase activity|GO:0046030|11402208|IDA  product IP5PI (INOSITOL POLYPHOSPHATE 5-PHOSPHATASE I); inositol trisphosphate phosphatase/ inositol-polyphosphate 5-phosphatase  note MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1 (AT5PTASE1); FUNCTIONS IN: inositol-polyphosphate 5-phosphatase activity, inositol trisphosphate phosphatase activity; INVOLVED IN: inositol trisphosphate metabolic process, inositol phosphate dephosphorylation; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: inositol polyphosphate 5-phosphatase, putative (TAIR:AT1G71710.1); Has 1701 Blast hits to 1378 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 721; Fungi - 419; Plants - 318; Viruses - 0; Other Eukaryotes - 243 (source: NCBI BLink).  protein_id AT1G34120.1p  transcript_id AT1G34120.1  protein_id AT1G34120.1p  transcript_id AT1G34120.1  
At1g34120	chr1:012426831	0.0	W/12426831-12426866,12426969-12427116,12427195-12427257,12427376-12427445,12427622-12427726,12427812-12428532,12428613-12428803,12428880-12428988,12429107-12429249,12429340-12429526	AT1G34120.2  CDS  gene_syn AT5P1, AT5PTASE1, ATIP5PI, F12G12.6, F12G12_6, INOSITOL POLYPHOSPHATE 5-PHOSPHATASE AT5P1, INOSITOL POLYPHOSPHATE 5-PHOSPHATASE I, IP5PI, MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1  gene IP5PI  function Encodes an inositol polyphosphate 5-phosphatase that appears to have Type I activity. It can dephosphorylate IP3(inositol(1,4,5)P3) and IP4 (inositol(1,3,4,5)P4), but it does not act on I(1)P, I(1,4)P2, or phosphatidylinositol(4,5)P2.  go_process inositol trisphosphate metabolic process|GO:0032957|11402208|IDA  go_process inositol phosphate dephosphorylation|GO:0046855|11402208|IDA  go_function inositol-polyphosphate 5-phosphatase activity|GO:0004445|11402208|IDA  go_function inositol-polyphosphate 5-phosphatase activity|GO:0004445||ISS  go_function inositol trisphosphate phosphatase activity|GO:0046030|11402208|IDA  product IP5PI (INOSITOL POLYPHOSPHATE 5-PHOSPHATASE I); inositol trisphosphate phosphatase/ inositol-polyphosphate 5-phosphatase  note INOSITOL POLYPHOSPHATE 5-PHOSPHATASE I (IP5PI); FUNCTIONS IN: inositol-polyphosphate 5-phosphatase activity, inositol trisphosphate phosphatase activity; INVOLVED IN: inositol trisphosphate metabolic process, inositol phosphate dephosphorylation; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: inositol polyphosphate 5-phosphatase, putative (TAIR:AT1G71710.1); Has 1700 Blast hits to 1378 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 720; Fungi - 417; Plants - 318; Viruses - 0; Other Eukaryotes - 245 (source: NCBI BLink).  protein_id AT1G34120.2p  transcript_id AT1G34120.2  protein_id AT1G34120.2p  transcript_id AT1G34120.2  
At1g34120	chr1:012426831	0.0	W/12426831-12426866,12426969-12427116,12427195-12427257,12427376-12427445,12427622-12427726,12427812-12428532,12428613-12428803,12428883-12428988,12429107-12429249,12429340-12429526	AT1G34120.3  CDS  gene_syn AT5P1, AT5PTASE1, ATIP5PI, F12G12.6, F12G12_6, INOSITOL POLYPHOSPHATE 5-PHOSPHATASE AT5P1, INOSITOL POLYPHOSPHATE 5-PHOSPHATASE I, IP5PI, MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1  gene IP5PI  function Encodes an inositol polyphosphate 5-phosphatase that appears to have Type I activity. It can dephosphorylate IP3(inositol(1,4,5)P3) and IP4 (inositol(1,3,4,5)P4), but it does not act on I(1)P, I(1,4)P2, or phosphatidylinositol(4,5)P2.  go_process inositol trisphosphate metabolic process|GO:0032957|11402208|IDA  go_process inositol phosphate dephosphorylation|GO:0046855|11402208|IDA  go_function inositol-polyphosphate 5-phosphatase activity|GO:0004445|11402208|IDA  go_function inositol-polyphosphate 5-phosphatase activity|GO:0004445||ISS  go_function inositol trisphosphate phosphatase activity|GO:0046030|11402208|IDA  product IP5PI (INOSITOL POLYPHOSPHATE 5-PHOSPHATASE I); inositol trisphosphate phosphatase/ inositol-polyphosphate 5-phosphatase  note INOSITOL POLYPHOSPHATE 5-PHOSPHATASE I (IP5PI); FUNCTIONS IN: inositol-polyphosphate 5-phosphatase activity, inositol trisphosphate phosphatase activity; INVOLVED IN: inositol trisphosphate metabolic process, inositol phosphate dephosphorylation; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: inositol polyphosphate 5-phosphatase, putative (TAIR:AT1G71710.1); Has 1702 Blast hits to 1378 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 720; Fungi - 417; Plants - 320; Viruses - 0; Other Eukaryotes - 245 (source: NCBI BLink).  protein_id AT1G34120.3p  transcript_id AT1G34120.3  protein_id AT1G34120.3p  transcript_id AT1G34120.3  
At1g34130	chr1:012430000	0.0	W/12430000-12431439,12431559-12432013,12432502-12432624,12432708-12432767,12432856-12432985	AT1G34130.1  CDS  gene_syn F12G12.5, F12G12_5, STT3B, staurosporin and temperature sensitive 3-like b  gene STT3B  function Encodes homolog of yeast STT3, a subunit of oligosaccharyltransferase.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process protein amino acid glycosylation|GO:0006486||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_function oligosaccharyl transferase activity|GO:0004576||ISS  product STT3B (staurosporin and temperature sensitive 3-like b); oligosaccharyl transferase  note staurosporin and temperature sensitive 3-like b (STT3B); FUNCTIONS IN: oligosaccharyl transferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: endoplasmic reticulum, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligosaccharyl transferase, STT3 subunit (InterPro:IPR003674); BEST Arabidopsis thaliana protein match is: STT3A (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A); oligosaccharyl transferase (TAIR:AT5G19690.1); Has 798 Blast hits to 779 proteins in 218 species: Archae - 167; Bacteria - 40; Metazoa - 262; Fungi - 90; Plants - 41; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink).  protein_id AT1G34130.1p  transcript_id AT1G34130.1  protein_id AT1G34130.1p  transcript_id AT1G34130.1  
At1g34140	chr1:012433977	0.0	C/12433977-12434735,12433829-12433906,12433356-12433742	AT1G34140.1  CDS  gene_syn F12G12.22, F12G12_22, PAB1, POLY(A) BINDING PROTEIN 1  gene PAB1  function polyadenylate-binding protein, putative / PABP, putative, non-consensus splice donor TA at exon 1; similar to polyadenylate-binding protein (poly(A)-binding protein) from (Triticum aestivum) GI:1737492, (Nicotiana tabacum) GI:7673355, {Arabidopsis thaliana} SP:P42731; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM). Only member of the class IV PABP family.  go_function RNA binding|GO:0003723||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product PAB1 (POLY(A) BINDING PROTEIN 1); RNA binding / translation initiation factor  note POLY(A) BINDING PROTEIN 1 (PAB1); FUNCTIONS IN: RNA binding, translation initiation factor activity; EXPRESSED IN: stem, fruit, flower, root, leaf; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, region 1 (InterPro:IPR003954); BEST Arabidopsis thaliana protein match is: PAB5 (POLY(A)-BINDING PROTEIN 5); RNA binding / poly(A) binding / translation initiation factor (TAIR:AT1G71770.1); Has 28938 Blast hits to 15256 proteins in 612 species: Archae - 8; Bacteria - 1354; Metazoa - 16867; Fungi - 3287; Plants - 3967; Viruses - 0; Other Eukaryotes - 3455 (source: NCBI BLink).  protein_id AT1G34140.1p  transcript_id AT1G34140.1  protein_id AT1G34140.1p  transcript_id AT1G34140.1  
At1g34150	chr1:012436086	0.0	W/12436086-12436184,12436419-12436478,12436558-12436703,12436786-12436831,12436919-12437029,12437263-12437344,12437432-12437528,12437659-12437719,12437810-12437940,12438334-12438451,12438569-12438692,12438778-12438888,12438989-12439075,12439170-12439237	AT1G34150.1  CDS  gene_syn F12G12.3, F12G12_3  go_process pseudouridine synthesis|GO:0001522||IEA  go_process tRNA processing|GO:0008033||IEA  go_component cellular_component|GO:0005575||ND  go_function pseudouridine synthase activity|GO:0009982|18599582|TAS  go_function pseudouridine synthase activity|GO:0009982||ISS  product tRNA pseudouridine synthase family protein  note tRNA pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: tRNA processing, pseudouridine synthesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: tRNA pseudouridine synthase (InterPro:IPR001406); BEST Arabidopsis thaliana protein match is: tRNA pseudouridine synthase family protein (TAIR:AT3G06950.1); Has 4682 Blast hits to 4681 proteins in 1472 species: Archae - 100; Bacteria - 2753; Metazoa - 228; Fungi - 170; Plants - 77; Viruses - 0; Other Eukaryotes - 1354 (source: NCBI BLink).  protein_id AT1G34150.1p  transcript_id AT1G34150.1  protein_id AT1G34150.1p  transcript_id AT1G34150.1  
At1g34160	chr1:012441393	0.0	W/12441393-12442828,12442916-12443072,12443173-12443256	AT1G34160.1  CDS  gene_syn F12G12.2, F12G12_2  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21065.1); Has 13487 Blast hits to 5074 proteins in 160 species: Archae - 0; Bacteria - 2; Metazoa - 77; Fungi - 54; Plants - 13052; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink).  protein_id AT1G34160.1p  transcript_id AT1G34160.1  protein_id AT1G34160.1p  transcript_id AT1G34160.1  
At1g34170	chr1:012446722	0.0	C/12446722-12446764,12446509-12446627,12446341-12446436,12446172-12446228,12445918-12446061,12445752-12445836,12445587-12445683,12445348-12445512,12445125-12445160,12444972-12445044,12444742-12444880,12444265-12444650	AT1G34170.2  CDS  gene_syn ARF13, AUXIN RESPONSE FACTOR 13, F12G12.1, F12G12_1  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note AUXIN RESPONSE FACTOR 13 (ARF13); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: ARF22 (AUXIN RESPONSE FACTOR 22); transcription factor (TAIR:AT1G34390.1); Has 613 Blast hits to 592 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 613; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G34170.2p  transcript_id AT1G34170.2  protein_id AT1G34170.2p  transcript_id AT1G34170.2  
At1g34170	chr1:012446722	0.0	C/12446722-12446764,12446509-12446627,12446341-12446436,12446172-12446228,12445918-12446061,12445752-12445836,12445587-12445683,12445348-12445512,12445125-12445160,12444972-12445044,12444742-12444880,12444394-12444650,12443803-12443990,12443578-12443719	AT1G34170.3  CDS  gene_syn ARF13, AUXIN RESPONSE FACTOR 13, F12G12.1, F12G12_1  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: ARF14 (AUXIN RESPONSE FACTOR 14); transcription factor (TAIR:AT1G35540.1).  protein_id AT1G34170.3p  transcript_id AT1G34170.3  protein_id AT1G34170.3p  transcript_id AT1G34170.3  
At1g34170	chr1:012446722	0.0	C/12446722-12446764,12446509-12446627,12446341-12446436,12446172-12446228,12445918-12446061,12445752-12445836,12445587-12445683,12445348-12445512,12445125-12445238,12444972-12445044,12444742-12444880,12444265-12444650	AT1G34170.1  CDS  gene_syn ARF13, AUXIN RESPONSE FACTOR 13, F12G12.1, F12G12_1  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note AUXIN RESPONSE FACTOR 13 (ARF13); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: ARF22 (AUXIN RESPONSE FACTOR 22); transcription factor (TAIR:AT1G34390.1); Has 601 Blast hits to 589 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 601; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G34170.1p  transcript_id AT1G34170.1  protein_id AT1G34170.1p  transcript_id AT1G34170.1  
At1g34180	chr1:012448726	0.0	W/12448726-12448912,12449209-12449486,12449563-12449862,12449969-12450539,12450762-12451120	AT1G34180.1  CDS  gene_syn Arabidopsis NAC domain containing protein 16, F23M19.14, F23M19_14, anac016  gene anac016  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_process response to chitin|GO:0010200|17722694|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac016 (Arabidopsis NAC domain containing protein 16); transcription factor  note Arabidopsis NAC domain containing protein 16 (anac016); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, response to chitin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac017 (Arabidopsis NAC domain containing protein 17); transcription factor (TAIR:AT1G34190.1); Has 1571 Blast hits to 1562 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1571; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G34180.1p  transcript_id AT1G34180.1  protein_id AT1G34180.1p  transcript_id AT1G34180.1  
At1g34180	chr1:012448726	0.0	W/12448726-12448948,12449209-12449486,12449563-12449862,12449969-12450539,12450762-12451120	AT1G34180.2  CDS  gene_syn Arabidopsis NAC domain containing protein 16, F23M19.14, F23M19_14, anac016  gene anac016  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_process response to chitin|GO:0010200|17722694|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac016 (Arabidopsis NAC domain containing protein 16); transcription factor  note Arabidopsis NAC domain containing protein 16 (anac016); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, response to chitin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac017 (Arabidopsis NAC domain containing protein 17); transcription factor (TAIR:AT1G34190.1); Has 1531 Blast hits to 1521 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1531; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G34180.2p  transcript_id AT1G34180.2  protein_id AT1G34180.2p  transcript_id AT1G34180.2  
At1g34190	chr1:012451729	0.0	W/12451729-12451915,12452067-12452632,12452755-12453307,12453547-12453914	AT1G34190.1  CDS  gene_syn Arabidopsis NAC domain containing protein 17, F12G12.30, anac017  gene anac017  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac017 (Arabidopsis NAC domain containing protein 17); transcription factor  note Arabidopsis NAC domain containing protein 17 (anac017); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac016 (Arabidopsis NAC domain containing protein 16); transcription factor (TAIR:AT1G34180.1); Has 1572 Blast hits to 1562 proteins in 56 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1564; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G34190.1p  transcript_id AT1G34190.1  protein_id AT1G34190.1p  transcript_id AT1G34190.1  
At1g34200	chr1:012455793	0.0	W/12455793-12456260,12456345-12456935	AT1G34200.1  CDS  gene_syn F23M19.12, F23M19_12  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function oxidoreductase activity|GO:0016491||ISS  product oxidoreductase family protein  note oxidoreductase family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase, N-terminal (InterPro:IPR000683), Oxidoreductase, C-terminal (InterPro:IPR004104), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: oxidoreductase family protein (TAIR:AT4G09670.1); Has 7122 Blast hits to 7121 proteins in 1041 species: Archae - 110; Bacteria - 4210; Metazoa - 197; Fungi - 301; Plants - 47; Viruses - 0; Other Eukaryotes - 2257 (source: NCBI BLink).  protein_id AT1G34200.1p  transcript_id AT1G34200.1  protein_id AT1G34200.1p  transcript_id AT1G34200.1  
At1g34210	chr1:012459078	0.0	W/12459078-12459174,12459583-12459715,12459799-12459870,12460122-12460265,12460495-12460566,12460661-12460732,12460968-12461080,12461268-12461399,12461490-12461831,12461967-12462361,12462438-12462752	AT1G34210.1  CDS  gene_syn ATSERK2, F23M19.11, F23M19_11, SERK2, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2  gene SERK2  function Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process microsporogenesis|GO:0009556|16284305|IMP  go_process microsporogenesis|GO:0009556|18667726|IGI  go_process pollen maturation|GO:0010152|16284306|IMP  go_function kinase activity|GO:0016301||ISS  product SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2); kinase  note SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2 (SERK2); FUNCTIONS IN: kinase activity; INVOLVED IN: pollen maturation, microsporogenesis; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1); kinase/ transmembrane receptor protein serine/threonine kinase (TAIR:AT1G71830.1); Has 117583 Blast hits to 86071 proteins in 2982 species: Archae - 75; Bacteria - 8948; Metazoa - 38635; Fungi - 5949; Plants - 48250; Viruses - 367; Other Eukaryotes - 15359 (source: NCBI BLink).  protein_id AT1G34210.1p  transcript_id AT1G34210.1  protein_id AT1G34210.1p  transcript_id AT1G34210.1  
At1g34220	chr1:012465862	0.0	C/12465862-12465911,12465618-12465750,12465442-12465545,12464999-12465170,12464632-12464772,12463102-12464361	AT1G34220.2  CDS  gene_syn F23M19.10, F23M19_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35730.1); Has 1856 Blast hits to 805 proteins in 164 species: Archae - 0; Bacteria - 34; Metazoa - 378; Fungi - 177; Plants - 168; Viruses - 1; Other Eukaryotes - 1098 (source: NCBI BLink).  protein_id AT1G34220.2p  transcript_id AT1G34220.2  protein_id AT1G34220.2p  transcript_id AT1G34220.2  
At1g34220	chr1:012465862	0.0	C/12465862-12465911,12465618-12465750,12465442-12465545,12464999-12465170,12464632-12464862,12463102-12464361	AT1G34220.1  CDS  gene_syn F23M19.10, F23M19_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35730.1); Has 1839 Blast hits to 806 proteins in 168 species: Archae - 0; Bacteria - 49; Metazoa - 372; Fungi - 160; Plants - 165; Viruses - 1; Other Eukaryotes - 1092 (source: NCBI BLink).  protein_id AT1G34220.1p  transcript_id AT1G34220.1  protein_id AT1G34220.1p  transcript_id AT1G34220.1  
At1g34230	chr1:012466962	0.0	C/12466962-12467841	AT1G34230.1  mRNA_TE_gene  pseudo  gene_syn F23M19.18  note Transposable element gene, pseudogene, similar to OSJNBb0041J06.18, blastp match of 33% identity and 2.8e-10 P-value to GP|27818010|dbj|BAC55773.1||AP005176 OSJNBb0041J06.18 {Oryza sativa (japonica cultivar-group)}  
At1g34240	chr1:012470418	0.0	W/12470418-12471252	AT1G34240.1  mRNA_TE_gene  pseudo  gene_syn F23M19.9, F23M19_9  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 5.6e-48 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At1g34245	chr1:012472990	0.0	W/12472990-12473083,12473172-12473236,12473428-12473631	AT1G34245.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: EPF1 (EPIDERMAL PATTERNING FACTOR 1) (TAIR:AT2G20875.1); Has 12 Blast hits to 12 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G34245.1p  transcript_id AT1G34245.1  protein_id AT1G34245.1p  transcript_id AT1G34245.1  
At1g34250	chr1:012483164	0.0	C/12483164-12483634	AT1G34250.1  mRNA_TE_gene  pseudo  gene_syn F23M19.17  note Transposable element gene, pseudogene, hypothetical protein  
At1g34260	chr1:012485967	0.0	W/12485967-12486012,12486091-12486124,12486214-12486804,12486958-12487102,12487190-12487543,12487708-12488466,12488578-12488912,12489178-12489304,12489516-12489671,12489760-12491049,12491155-12491427,12491539-12491799	AT1G34260.1  CDS  gene_syn F23M19.8, F23M19_8  go_process phosphatidylinositol metabolic process|GO:0046488||IEA  go_function phosphatidylinositol phosphate kinase activity|GO:0016307||IEA  go_component cellular_component|GO:0005575||ND  go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308||ISS  product phosphatidylinositol-4-phosphate 5-kinase family protein  note phosphatidylinositol-4-phosphate 5-kinase family protein; FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity; INVOLVED IN: phosphatidylinositol metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: 1-phosphatidylinositol-4-phosphate 5-kinase/ ATP binding / phosphatidylinositol phosphate kinase/ protein binding / zinc ion binding (TAIR:AT4G33240.2); Has 2240 Blast hits to 1982 proteins in 264 species: Archae - 237; Bacteria - 0; Metazoa - 864; Fungi - 420; Plants - 273; Viruses - 0; Other Eukaryotes - 446 (source: NCBI BLink).  protein_id AT1G34260.1p  transcript_id AT1G34260.1  protein_id AT1G34260.1p  transcript_id AT1G34260.1  
At1g34270	chr1:012493890	0.0	C/12493890-12494514,12493434-12493690,12492571-12493122	AT1G34270.1  CDS  gene_syn F23M19.7, F23M19_7  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product exostosin family protein  note exostosin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: ARAD1 (ARABINAN DEFICIENT 1); catalytic/ transferase, transferring glycosyl groups (TAIR:AT2G35100.1); Has 750 Blast hits to 746 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 160; Fungi - 4; Plants - 532; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT1G34270.1p  transcript_id AT1G34270.1  protein_id AT1G34270.1p  transcript_id AT1G34270.1  
At1g34280	chr1:012495142	0.0	C/12495142-12495381	AT1G34280.1  CDS  gene_syn F23M19.16, F23M19_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, root; EXPRESSED DURING: 4 anthesis; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G34280.1p  transcript_id AT1G34280.1  protein_id AT1G34280.1p  transcript_id AT1G34280.1  
At1g34281	chr1:012495726	0.0	C/12495726-12496038	AT1G34281.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G28720; unknown protein  
At1g34290	chr1:012498000	0.0	W/12498000-12498800	AT1G34290.1  CDS  gene_syn AtRLP5, F23M19.6, F23M19_6, Receptor Like Protein 5  gene AtRLP5  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product AtRLP5 (Receptor Like Protein 5); protein binding  note Receptor Like Protein 5 (AtRLP5); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / protein kinase family protein (TAIR:AT1G24650.1); Has 6808 Blast hits to 4370 proteins in 283 species: Archae - 6; Bacteria - 78; Metazoa - 87; Fungi - 0; Plants - 6455; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink).  protein_id AT1G34290.1p  transcript_id AT1G34290.1  protein_id AT1G34290.1p  transcript_id AT1G34290.1  
At1g34300	chr1:012503450	0.0	W/12503450-12505939	AT1G34300.1  CDS  gene_syn F23M19.5, F23M19_5  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product lectin protein kinase family protein  note lectin protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT2G19130.1); Has 86762 Blast hits to 85548 proteins in 3230 species: Archae - 48; Bacteria - 7080; Metazoa - 38552; Fungi - 6708; Plants - 19317; Viruses - 394; Other Eukaryotes - 14663 (source: NCBI BLink).  protein_id AT1G34300.1p  transcript_id AT1G34300.1  protein_id AT1G34300.1p  transcript_id AT1G34300.1  
At1g34310	chr1:012511472	0.0	C/12511472-12511520,12511278-12511396,12511076-12511171,12510921-12510977,12510682-12510825,12510518-12510602,12510336-12510426,12510092-12510256,12509872-12509985,12509710-12509782,12509479-12509617,12508962-12509374,12508687-12508874,12508548-12508596	AT1G34310.1  CDS  gene_syn ARF12, AUXIN RESPONSE FACTOR 12, F23M19.4, F23M19_4  gene ARF12  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process response to hormone stimulus|GO:0009725||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product ARF12 (AUXIN RESPONSE FACTOR 12); transcription factor  note AUXIN RESPONSE FACTOR 12 (ARF12); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to hormone stimulus, regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: ARF22 (AUXIN RESPONSE FACTOR 22); transcription factor (TAIR:AT1G34390.1); Has 1383 Blast hits to 1182 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1381; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G34310.1p  transcript_id AT1G34310.1  protein_id AT1G34310.1p  transcript_id AT1G34310.1  
At1g34315	chr1:012516421	0.0	C/12516421-12516521,12515917-12516033,12515531-12515601,12515330-12515397,12514972-12515037,12514811-12514900,12514659-12514722,12514545-12514610,12514418-12514455,12514106-12514243	AT1G34315.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43870.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G34315.1p  transcript_id AT1G34315.1  protein_id AT1G34315.1p  transcript_id AT1G34315.1  
At1g34320	chr1:012520713	0.0	W/12520713-12521027,12521108-12521433,12521521-12521613,12521709-12521799,12521886-12521979,12522110-12522213,12522315-12522384,12522517-12522620,12522836-12522952,12523081-12523157,12523367-12523411,12523509-12524046	AT1G34320.1  CDS  gene_syn F23M19.3, F23M19_3  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  product unknown protein  note unknown protein; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF668 (InterPro:IPR007700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08660.1); Has 160 Blast hits to 124 proteins in 13 species: Archae - 0; Bacteria - 1; Metazoa - 3; Fungi - 0; Plants - 156; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G34320.1p  transcript_id AT1G34320.1  protein_id AT1G34320.1p  transcript_id AT1G34320.1  
At1g34330	chr1:012528095	0.0	W/12528095-12529132	AT1G34330.1  pseudogenic_transcript  pseudo  gene_syn F7P12.9  note pseudogene, putative peroxidase, similar to anionic peroxidase GI:559235 from (Petroselinum crispum); blastp match of 35% identity and 2.3e-53 P-value to GP|21426121|gb|AAM52318.1|AC105363_7|AC105363 Putative peroxidase {Oryza sativa (japonica cultivar-group)}  
At1g34340	chr1:012530936	0.0	W/12530936-12531189,12531271-12531360,12531434-12531495,12531573-12531673,12531748-12531837,12531934-12532056,12532282-12532359,12532576-12532661,12532780-12532828,12532977-12533033,12533191-12533321,12533395-12533478,12533556-12533622,12533711-12534031	AT1G34340.1  CDS  gene_syn F7P12.5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product esterase/lipase/thioesterase family protein  note esterase/lipase/thioesterase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: embryogenesis-associated protein-related (TAIR:AT5G49950.1); Has 1612 Blast hits to 1612 proteins in 566 species: Archae - 0; Bacteria - 846; Metazoa - 295; Fungi - 122; Plants - 66; Viruses - 0; Other Eukaryotes - 283 (source: NCBI BLink).  protein_id AT1G34340.1p  transcript_id AT1G34340.1  protein_id AT1G34340.1p  transcript_id AT1G34340.1  
At1g34350	chr1:012534585	0.0	W/12534585-12534725,12534901-12535006,12535396-12535544,12535832-12535927	AT1G34350.1  CDS  gene_syn F7P12.4, F7P12_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 140 Blast hits to 140 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 91; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G34350.1p  transcript_id AT1G34350.1  protein_id AT1G34350.1p  transcript_id AT1G34350.1  
At1g34355	chr1:012536497	0.0	W/12536497-12536809,12536928-12537169,12537279-12537740,12537897-12540557,12540632-12540767,12541034-12541401,12541479-12541730	AT1G34355.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product forkhead-associated domain-containing protein / FHA domain-containing protein  note forkhead-associated domain-containing protein / FHA domain-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34110.1); Has 2684 Blast hits to 2165 proteins in 369 species: Archae - 4; Bacteria - 622; Metazoa - 1085; Fungi - 264; Plants - 122; Viruses - 2; Other Eukaryotes - 585 (source: NCBI BLink).  protein_id AT1G34355.1p  transcript_id AT1G34355.1  protein_id AT1G34355.1p  transcript_id AT1G34355.1  
At1g34360	chr1:012542986	0.0	W/12542986-12543198,12543604-12543694,12543967-12544034,12544306-12544404,12544506-12544559,12544674-12544742,12544976-12545059,12545141-12546025	AT1G34360.1  CDS  gene_syn F7P12.8, F7P12_8  go_process translational initiation|GO:0006413||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_component cellular_component|GO:0005575||ND  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product translation initiation factor 3 (IF-3) family protein  note translation initiation factor 3 (IF-3) family protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Initiation factor 3 (InterPro:IPR001288); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / extensin family protein (TAIR:AT3G19020.1); Has 38410 Blast hits to 24151 proteins in 1904 species: Archae - 38; Bacteria - 6786; Metazoa - 12387; Fungi - 5865; Plants - 4385; Viruses - 1048; Other Eukaryotes - 7901 (source: NCBI BLink).  protein_id AT1G34360.1p  transcript_id AT1G34360.1  protein_id AT1G34360.1p  transcript_id AT1G34360.1  
At1g34370	chr1:012551002	0.0	W/12551002-12552501	AT1G34370.1  CDS  gene_syn F7P12.7, F7P12_7, STOP1, sensitive to proton rhizotoxicity 1  gene STOP1  function Encodes a putative nuclear Cys(2)His(2)-type zinc finger protein involved in H+ and Al3+ rhizotoxicity. In mutants exposed to aluminum stress, there is no induction of AtALMT1, an malate transporter known to be involved in the mediation of aluminum toxicity.  go_component nucleus|GO:0005634|17535918|ISS  go_process response to aluminum ion|GO:0010044|17535918|IMP  go_process response to acidity|GO:0010447|17535918|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product STOP1 (sensitive to proton rhizotoxicity 1); nucleic acid binding / transcription factor/ zinc ion binding  note sensitive to proton rhizotoxicity 1 (STOP1); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: response to aluminum ion, response to acidity, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT5G22890.1); Has 21794 Blast hits to 11852 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 20815; Fungi - 53; Plants - 380; Viruses - 0; Other Eukaryotes - 546 (source: NCBI BLink).  protein_id AT1G34370.1p  transcript_id AT1G34370.1  protein_id AT1G34370.1p  transcript_id AT1G34370.1  
At1g34370	chr1:012551002	0.0	W/12551002-12552501	AT1G34370.2  CDS  gene_syn F7P12.7, F7P12_7, STOP1, sensitive to proton rhizotoxicity 1  gene STOP1  function Encodes a putative nuclear Cys(2)His(2)-type zinc finger protein involved in H+ and Al3+ rhizotoxicity. In mutants exposed to aluminum stress, there is no induction of AtALMT1, an malate transporter known to be involved in the mediation of aluminum toxicity.  go_component nucleus|GO:0005634|17535918|ISS  go_process response to aluminum ion|GO:0010044|17535918|IMP  go_process response to acidity|GO:0010447|17535918|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product STOP1 (sensitive to proton rhizotoxicity 1); nucleic acid binding / transcription factor/ zinc ion binding  note sensitive to proton rhizotoxicity 1 (STOP1); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: response to aluminum ion, response to acidity, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT5G22890.1); Has 21794 Blast hits to 11852 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 20815; Fungi - 53; Plants - 380; Viruses - 0; Other Eukaryotes - 546 (source: NCBI BLink).  protein_id AT1G34370.2p  transcript_id AT1G34370.2  protein_id AT1G34370.2p  transcript_id AT1G34370.2  
At1g34370	chr1:012551449	0.0	W/12551449-12552501	AT1G34370.3  CDS  gene_syn F7P12.7, F7P12_7, STOP1, sensitive to proton rhizotoxicity 1  gene STOP1  function Encodes a putative nuclear Cys(2)His(2)-type zinc finger protein involved in H+ and Al3+ rhizotoxicity. In mutants exposed to aluminum stress, there is no induction of AtALMT1, an malate transporter known to be involved in the mediation of aluminum toxicity.  go_component nucleus|GO:0005634|17535918|ISS  go_process response to aluminum ion|GO:0010044|17535918|IMP  go_process response to acidity|GO:0010447|17535918|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product STOP1 (sensitive to proton rhizotoxicity 1); nucleic acid binding / transcription factor/ zinc ion binding  note sensitive to proton rhizotoxicity 1 (STOP1); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: response to aluminum ion, response to acidity, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT5G22890.1); Has 21768 Blast hits to 11848 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 20796; Fungi - 53; Plants - 380; Viruses - 0; Other Eukaryotes - 539 (source: NCBI BLink).  protein_id AT1G34370.3p  transcript_id AT1G34370.3  protein_id AT1G34370.3p  transcript_id AT1G34370.3  
At1g34380	chr1:012553958	0.0	C/12553958-12554299,12553731-12553874,12553297-12553605	AT1G34380.1  CDS  gene_syn F7P12.3, F7P12_3  go_component chloroplast|GO:0009507||IEA  go_function DNA binding|GO:0003677||IEA  go_function 5 -3  exonuclease activity|GO:0008409||IEA  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product 5 -3  exonuclease family protein  note 5 -3  exonuclease family protein; FUNCTIONS IN: 5 -3  exonuclease activity, DNA binding, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 5&apos;-3&apos; exonuclease (InterPro:IPR002421); BEST Arabidopsis thaliana protein match is: 5 -3  exonuclease family protein (TAIR:AT3G52050.5); Has 4864 Blast hits to 4864 proteins in 1242 species: Archae - 0; Bacteria - 2774; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 9; Other Eukaryotes - 2036 (source: NCBI BLink).  protein_id AT1G34380.1p  transcript_id AT1G34380.1  protein_id AT1G34380.1p  transcript_id AT1G34380.1  
At1g34380	chr1:012553958	0.0	C/12553958-12554299,12553731-12553874,12553371-12553605,12553035-12553257,12552839-12552938	AT1G34380.2  CDS  gene_syn F7P12.3, F7P12_3  go_component chloroplast|GO:0009507||IEA  go_function DNA binding|GO:0003677||IEA  go_function catalytic activity|GO:0003824||IEA  go_function 5 -3  exonuclease activity|GO:0008409||IEA  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product 5 -3  exonuclease family protein  note 5 -3  exonuclease family protein; FUNCTIONS IN: 5 -3  exonuclease activity, DNA binding, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 5&apos;-3&apos; exonuclease (InterPro:IPR002421), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918); BEST Arabidopsis thaliana protein match is: 5 -3  exonuclease family protein (TAIR:AT3G52050.5); Has 5959 Blast hits to 5959 proteins in 1372 species: Archae - 0; Bacteria - 3187; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 41; Other Eukaryotes - 2683 (source: NCBI BLink).  protein_id AT1G34380.2p  transcript_id AT1G34380.2  protein_id AT1G34380.2p  transcript_id AT1G34380.2  
At1g34390	chr1:012556005	0.0	W/12556005-12556053,12556130-12556248,12556461-12556556,12556653-12556709,12556806-12556943,12557022-12557106,12557198-12557288,12557368-12557532,12557643-12557756,12557846-12557918,12557992-12558130,12558235-12558647,12558735-12558922,12559013-12559082	AT1G34390.1  CDS  gene_syn ARF22, AUXIN RESPONSE FACTOR 22, F7P12.6, F7P12_6  gene ARF22  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ARF22 (AUXIN RESPONSE FACTOR 22); transcription factor  note AUXIN RESPONSE FACTOR 22 (ARF22); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: ARF12 (AUXIN RESPONSE FACTOR 12); transcription factor (TAIR:AT1G34310.1); Has 1319 Blast hits to 1127 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1319; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G34390.1p  transcript_id AT1G34390.1  protein_id AT1G34390.1p  transcript_id AT1G34390.1  
At1g34392	chr1:012560460	0.0	C/12560460-12561315	AT1G34392.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G34392.1  
At1g34400	chr1:012566554	0.0	C/12566554-12566615,12565992-12566295	AT1G34400.1  CDS  gene_syn F7P12.11, F7P12_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G34400.1p  transcript_id AT1G34400.1  protein_id AT1G34400.1p  transcript_id AT1G34400.1  
At1g34405	chr1:012570841	0.0	C/12570841-12572126	AT1G34405.1  mRNA_TE_gene  pseudo  gene_syn F7P12.10  note Transposable element gene, gypsy-like retrotransposon family, has a 4.8e-111 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At1g34410	chr1:012577722	0.0	W/12577722-12577770,12577847-12577965,12578148-12578243,12578349-12578405,12578513-12578656,12578736-12578820,12578912-12579002,12579078-12579242,12579349-12579462,12579552-12579624,12579717-12579855,12579960-12580372,12580460-12580647,12580737-12580824	AT1G34410.1  CDS  gene_syn ARF21, AUXIN RESPONSE FACTOR 21, F12K21.26, F12K21_26  gene ARF21  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ARF21 (AUXIN RESPONSE FACTOR 21); transcription factor  note AUXIN RESPONSE FACTOR 21 (ARF21); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: ARF15 (AUXIN RESPONSE FACTOR 15); transcription factor (TAIR:AT1G35520.1); Has 1373 Blast hits to 1168 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1373; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G34410.1p  transcript_id AT1G34410.1  protein_id AT1G34410.1p  transcript_id AT1G34410.1  
At1g34418	chr1:012582122	0.0	W/12582122-12582721	AT1G34418.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G34418.1  
At1g34419	chr1:012583039	0.0	C/12583039-12583206	AT1G34419.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G34419.1p  transcript_id AT1G34419.1  protein_id AT1G34419.1p  transcript_id AT1G34419.1  
At1g34420	chr1:012584587	0.0	W/12584587-12587182,12587266-12587570	AT1G34420.1  CDS  gene_syn F12K21.25, F12K21_25  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function protein kinase activity|GO:0004672||ISS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein / protein kinase family protein  note leucine-rich repeat family protein / protein kinase family protein; FUNCTIONS IN: protein binding, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT2G41820.1); Has 96933 Blast hits to 40813 proteins in 1274 species: Archae - 34; Bacteria - 6921; Metazoa - 38566; Fungi - 1310; Plants - 42620; Viruses - 72; Other Eukaryotes - 7410 (source: NCBI BLink).  protein_id AT1G34420.1p  transcript_id AT1G34420.1  protein_id AT1G34420.1p  transcript_id AT1G34420.1  
At1g34430	chr1:012589227	0.0	C/12589227-12590084,12588804-12588995,12588625-12588712,12588452-12588522,12588252-12588335,12588027-12588131	AT1G34430.1  CDS  gene_syn EMB3003, F12K21.24, F12K21_24, embryo defective 3003  gene EMB3003  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_function protein binding|GO:0005515||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function dihydrolipoyllysine-residue acetyltransferase activity|GO:0004742||ISS  product EMB3003 (embryo defective 3003); acyltransferase/ dihydrolipoyllysine-residue acetyltransferase/ protein binding  note embryo defective 3003 (EMB3003); FUNCTIONS IN: dihydrolipoyllysine-residue acetyltransferase activity, protein binding, acyltransferase activity; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cytosolic ribosome, plasma membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), E3 binding (InterPro:IPR004167), 2-oxoacid dehydrogenase acyltransferase, catalytic domain (InterPro:IPR001078), Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: LTA2; dihydrolipoyllysine-residue acetyltransferase (TAIR:AT3G25860.1); Has 15590 Blast hits to 14171 proteins in 1332 species: Archae - 64; Bacteria - 7001; Metazoa - 632; Fungi - 308; Plants - 200; Viruses - 0; Other Eukaryotes - 7385 (source: NCBI BLink).  protein_id AT1G34430.1p  transcript_id AT1G34430.1  protein_id AT1G34430.1p  transcript_id AT1G34430.1  
At1g34440	chr1:012592709	0.0	C/12592709-12592737,12592188-12592409,12592042-12592141,12591800-12591842,12591348-12591427	AT1G34440.1  CDS  gene_syn F12K21.23, F12K21_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G05095.1); Has 24 Blast hits to 24 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G34440.1p  transcript_id AT1G34440.1  protein_id AT1G34440.1p  transcript_id AT1G34440.1  
At1g34460	chr1:012595110	0.0	W/12595110-12595265,12595611-12595716,12596120-12596188,12596532-12596573,12596928-12597273,12597324-12597645,12597778-12597936,12598322-12598389,12599096-12599249,12600005-12600097	AT1G34460.1  CDS  gene_syn CYC3, CYCB1;5, CYCLIN 3, CYCLIN B1;5, F12K21.22, F12K21_22  gene CYCB1;5  function B1 type cyclin  go_component endomembrane system|GO:0012505||IEA  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase regulator activity|GO:0016538||ISS  product CYCB1;5 (CYCLIN B1;5); cyclin-dependent protein kinase regulator  note CYCLIN B1;5 (CYCB1;5); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671); BEST Arabidopsis thaliana protein match is: CYC1BAT; cyclin-dependent protein kinase regulator (TAIR:AT5G06150.1); Has 2432 Blast hits to 2432 proteins in 264 species: Archae - 0; Bacteria - 0; Metazoa - 1287; Fungi - 359; Plants - 467; Viruses - 15; Other Eukaryotes - 304 (source: NCBI BLink).  protein_id AT1G34460.1p  transcript_id AT1G34460.1  protein_id AT1G34460.1p  transcript_id AT1G34460.1  
At1g34470	chr1:012604574	0.0	W/12604574-12604736,12605014-12605070,12605242-12605332,12605532-12605692,12605784-12605911,12605993-12606130,12606219-12606311,12606401-12606506,12606589-12606758	AT1G34470.1  CDS  gene_syn F12K21.21, F12K21_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product permease-related  note permease-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF803 (InterPro:IPR008521); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09640.1); Has 872 Blast hits to 852 proteins in 149 species: Archae - 0; Bacteria - 54; Metazoa - 361; Fungi - 240; Plants - 145; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT1G34470.1p  transcript_id AT1G34470.1  protein_id AT1G34470.1p  transcript_id AT1G34470.1  
At1g34480	chr1:012607276	0.0	W/12607276-12609084	AT1G34480.1  CDS  gene_syn F12K21.20, F12K21_20  go_component intracellular|GO:0005622||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, B-box (InterPro:IPR000315), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT3G21210.1); Has 1001 Blast hits to 513 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 0; Plants - 939; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT1G34480.1p  transcript_id AT1G34480.1  protein_id AT1G34480.1p  transcript_id AT1G34480.1  
At1g34490	chr1:012609482	0.0	W/12609482-12610495	AT1G34490.1  CDS  gene_syn F12K21.28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function acyltransferase activity|GO:0008415||ISS  product membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related  note membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Wax synthase (InterPro:IPR017088); BEST Arabidopsis thaliana protein match is: long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein (TAIR:AT1G34520.1); Has 357 Blast hits to 355 proteins in 119 species: Archae - 0; Bacteria - 203; Metazoa - 0; Fungi - 20; Plants - 112; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT1G34490.1p  transcript_id AT1G34490.1  protein_id AT1G34490.1p  transcript_id AT1G34490.1  
At1g34500	chr1:012611638	0.0	W/12611638-12612663	AT1G34500.1  CDS  gene_syn F12K21.19, F12K21_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function acyltransferase activity|GO:0008415||ISS  product membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related  note membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Wax synthase (InterPro:IPR017088), Membrane bound O-acyl transferase, MBOAT (InterPro:IPR004299); BEST Arabidopsis thaliana protein match is: membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related (TAIR:AT5G55350.1); Has 890 Blast hits to 888 proteins in 295 species: Archae - 0; Bacteria - 644; Metazoa - 0; Fungi - 16; Plants - 113; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT1G34500.1p  transcript_id AT1G34500.1  protein_id AT1G34500.1p  transcript_id AT1G34500.1  
At1g34510	chr1:012616752	0.0	C/12616752-12616952,12615928-12616659	AT1G34510.1  CDS  gene_syn F12K21.18, F12K21_18  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT4G26010.1); Has 2761 Blast hits to 2746 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 75; Plants - 2648; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT1G34510.1p  transcript_id AT1G34510.1  protein_id AT1G34510.1p  transcript_id AT1G34510.1  
At1g34520	chr1:012623477	0.0	W/12623477-12624224,12624269-12624354,12624403-12624432	AT1G34520.1  CDS  gene_syn F12K21.17, F12K21_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function acyltransferase activity|GO:0008415||ISS  product long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein  note long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related (TAIR:AT1G34490.1); Has 487 Blast hits to 485 proteins in 171 species: Archae - 0; Bacteria - 324; Metazoa - 0; Fungi - 4; Plants - 112; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G34520.1p  transcript_id AT1G34520.1  protein_id AT1G34520.1p  transcript_id AT1G34520.1  
At1g34530	chr1:012627875	0.0	W/12627875-12630008	AT1G34530.1  mRNA_TE_gene  pseudo  gene_syn F12K21.16, F12K21_16  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 7.8e-116 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At1g34540	chr1:012637054	0.0	W/12637054-12638550	AT1G34540.1  CDS  gene_syn CYP94D1, CYTOCHROME P450, FAMILY 94, SUBFAMILY D, POLYPEPTIDE 1, F12K21.15, F12K21_15  gene CYP94D1  function member of CYP94D  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP94D1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP94D1; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP94D2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G56630.1); Has 20666 Blast hits to 20614 proteins in 1098 species: Archae - 19; Bacteria - 1601; Metazoa - 9515; Fungi - 3971; Plants - 4773; Viruses - 3; Other Eukaryotes - 784 (source: NCBI BLink).  protein_id AT1G34540.1p  transcript_id AT1G34540.1  protein_id AT1G34540.1p  transcript_id AT1G34540.1  
At1g34545	chr1:012641081	0.0	C/12641081-12642418	AT1G34545.1  mRNA_TE_gene  pseudo  gene_syn F12K21.14, F12K21_14  note Transposable element gene, copia-like retrotransposon family, has a 3.0e-112 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea)  
At1g34550	chr1:012652395	0.0	C/12652395-12652646,12650559-12650862,12649913-12650479,12649478-12649830,12648783-12648994,12648178-12648434,12647668-12647846,12647088-12647171	AT1G34550.1  CDS  gene_syn EMB2756, EMBRYO DEFECTIVE 2756, F12K21.12, F12K21_12  gene EMB2756  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product EMB2756 (EMBRYO DEFECTIVE 2756)  note EMBRYO DEFECTIVE 2756 (EMB2756); INVOLVED IN: embryonic development ending in seed dormancy, response to cadmium ion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF616 (InterPro:IPR006852); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09630.1); Has 446 Blast hits to 443 proteins in 82 species: Archae - 6; Bacteria - 29; Metazoa - 78; Fungi - 33; Plants - 129; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).  protein_id AT1G34550.1p  transcript_id AT1G34550.1  protein_id AT1G34550.1p  transcript_id AT1G34550.1  
At1g34560	chr1:012653961	0.0	W/12653961-12654037,12654117-12654222,12654318-12654677	AT1G34560.1  CDS  gene_syn F12K21.10, F12K21_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1184 (InterPro:IPR009568); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27900.1); Has 10 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G34560.1p  transcript_id AT1G34560.1  protein_id AT1G34560.1p  transcript_id AT1G34560.1  
At1g34570	chr1:012656429	0.0	C/12656429-12656444,12656236-12656295,12655913-12656034,12655697-12655818,12655297-12655603	AT1G34570.1  CDS  gene_syn F12K21.27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15750.1); Has 88 Blast hits to 88 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 44; Fungi - 7; Plants - 32; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G34570.1p  transcript_id AT1G34570.1  protein_id AT1G34570.1p  transcript_id AT1G34570.1  
At1g34575	chr1:012657149	0.0	C/12657149-12658732	AT1G34575.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function electron carrier activity|GO:0009055||ISS  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT1G30710.1); Has 2352 Blast hits to 2294 proteins in 369 species: Archae - 2; Bacteria - 864; Metazoa - 0; Fungi - 1038; Plants - 335; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).  protein_id AT1G34575.1p  transcript_id AT1G34575.1  protein_id AT1G34575.1p  transcript_id AT1G34575.1  
At1g34580	chr1:012660631	0.0	W/12660631-12660766,12660849-12661168,12661630-12662268,12663128-12663553	AT1G34580.1  CDS  gene_syn F12K21.8, F12K21_8  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product monosaccharide transporter, putative  note monosaccharide transporter, putative; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: STP1 (SUGAR TRANSPORTER 1); carbohydrate transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT1G11260.1); Has 17271 Blast hits to 16944 proteins in 1138 species: Archae - 239; Bacteria - 6622; Metazoa - 3446; Fungi - 4520; Plants - 1408; Viruses - 0; Other Eukaryotes - 1036 (source: NCBI BLink).  protein_id AT1G34580.1p  transcript_id AT1G34580.1  protein_id AT1G34580.1p  transcript_id AT1G34580.1  
At1g34590	chr1:012665167	0.0	W/12665167-12667818	AT1G34590.1  mRNA_TE_gene  pseudo  gene_syn F12K21.7, F12K21_7  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G06603.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G40133.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G60930.1); similar to hypothetical protein 27.t00126 [Brassica oleracea] (GB:ABD65062.1)  
At1g34600	chr1:012668425	0.0	C/12668425-12673094	AT1G34600.1  mRNA_TE_gene  pseudo  gene_syn F12K21.6  note Transposable element gene, gypsy-like retrotransposon family, has a 1.1e-135 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At1g34610	chr1:012675584	0.0	W/12675584-12679303	AT1G34610.1  mRNA_TE_gene  pseudo  gene_syn F12K21.5  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G09170.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G04545.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At1g34620	chr1:012680938	0.0	C/12680938-12684547	AT1G34620.1  mRNA_TE_gene  pseudo  gene_syn F12K21.4, F12K21_4  note Transposable element gene, Mutator-like transposase family, has a 8.5e-75 P-value blast match to Q9SJR8 /172-333 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g34630	chr1:012685317	0.0	W/12685317-12685603,12685676-12685816,12685931-12686158,12686274-12686481,12686607-12686743,12686828-12686908,12687002-12687068,12687139-12687435	AT1G34630.1  CDS  gene_syn F12K21.3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G51150.1); Has 221 Blast hits to 214 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 67; Plants - 32; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT1G34630.1p  transcript_id AT1G34630.1  protein_id AT1G34630.1p  transcript_id AT1G34630.1  
At1g34630	chr1:012685317	0.0	W/12685317-12685603,12685676-12685816,12685931-12686158,12686274-12686481,12686607-12686743,12686828-12686908,12687002-12687107	AT1G34630.2  CDS  gene_syn F12K21.3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G51150.1); Has 107 Blast hits to 107 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 56; Plants - 30; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G34630.2p  transcript_id AT1G34630.2  protein_id AT1G34630.2p  transcript_id AT1G34630.2  
At1g34640	chr1:012688186	0.0	C/12688186-12688427,12687706-12687796	AT1G34640.1  CDS  gene_syn F12K21.2  go_component endomembrane system|GO:0012505||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  product unknown protein  note unknown protein; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 13 Blast hits to 13 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G34640.1p  transcript_id AT1G34640.1  protein_id AT1G34640.1p  transcript_id AT1G34640.1  
At1g34650	chr1:012693011	0.0	W/12693011-12693108,12693208-12693325,12693550-12693738,12694580-12695092,12695769-12695867,12695949-12696158,12696294-12696474,12696648-12696916,12697021-12697110,12697419-12697778	AT1G34650.1  CDS  gene_syn F21H2.11, F21H2_11, HDG10, HOMEODOMAIN GLABROUS 10  gene HDG10  function Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product HDG10 (HOMEODOMAIN GLABROUS 10); DNA binding / transcription factor  note HOMEODOMAIN GLABROUS 10 (HDG10); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: anther; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: HDG9 (HOMEODOMAIN GLABROUS 9); DNA binding / sequence-specific DNA binding / transcription factor (TAIR:AT5G17320.1); Has 3493 Blast hits to 3491 proteins in 302 species: Archae - 0; Bacteria - 0; Metazoa - 2342; Fungi - 111; Plants - 1006; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT1G34650.1p  transcript_id AT1G34650.1  protein_id AT1G34650.1p  transcript_id AT1G34650.1  
At1g34660	chr1:012699872	0.0	W/12699872-12701377	AT1G34660.1  mRNA_TE_gene  pseudo  gene_syn F21H2.10, F21H2_10  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 1.1e-114 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota)  
At1g34670	chr1:012709128	0.0	W/12709128-12709260,12709378-12709507,12709589-12710423	AT1G34670.1  CDS  gene_syn AtMYB93, F21H2.9, F21H2_9, myb domain protein 93  gene AtMYB93  function Member of the R2R3 factor gene family.  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product AtMYB93 (myb domain protein 93); DNA binding / transcription factor  note myb domain protein 93 (AtMYB93); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to auxin stimulus, response to abscisic acid stimulus, regulation of transcription, DNA-dependent, response to salicylic acid stimulus; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB107 (myb domain protein 107); DNA binding / transcription factor (TAIR:AT3G02940.1); Has 6436 Blast hits to 5858 proteins in 370 species: Archae - 0; Bacteria - 0; Metazoa - 722; Fungi - 310; Plants - 3762; Viruses - 6; Other Eukaryotes - 1636 (source: NCBI BLink).  protein_id AT1G34670.1p  transcript_id AT1G34670.1  protein_id AT1G34670.1p  transcript_id AT1G34670.1  
At1g34680	chr1:012711181	0.0	W/12711181-12711455	AT1G34680.1  pseudogenic_transcript  pseudo  gene_syn F21H2.19  note pseudogene, ribosomal maturase, blastp match of 66% identity and 1.8e-18 P-value to GP|12002339|gb|AAG43301.1|AF144332_1|AF144332 maturase K {Arabis lyallii}  
At1g34690	chr1:012713190	0.0	W/12713190-12713570	AT1G34690.1  pseudogenic_transcript  pseudo  note pseudogene, putative maturase, blastp match of 75% identity and 2.2e-25 P-value to SP|Q9GF62|MATK_BARVU Maturase K (Intron maturase). (Yellow rocket) {Barbarea vulgaris}  
At1g34700	chr1:012714209	0.0	W/12714209-12717181	AT1G34700.1  mRNA_TE_gene  pseudo  gene_syn F21H2.21, F21H2_21  note Transposable element gene, Mutator-like transposase family, has a 2.6e-83 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g34710	chr1:012717730	0.0	W/12717730-12718678	AT1G34710.1  mRNA_TE_gene  pseudo  gene_syn F21H2.22, F21H2_22  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14780.1); similar to Nucleic acid-binding, OB-fold [Medicago truncatula] (GB:ABD33040.1); similar to hypothetical protein 31.t00082 [Brassica oleracea] (GB:ABD65101.1); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At1g34720	chr1:012719357	0.0	C/12719357-12719887	AT1G34720.1  mRNA_TE_gene  pseudo  gene_syn F21H2.8, F21H2_8  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G27800.1); contains domain Hedgehog/intein (Hint) domain (SSF51294)  
At1g34730	chr1:012720886	0.0	C/12720886-12721377	AT1G34730.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G36840.1); similar to hypothetical protein 40.t00047 [Brassica oleracea] (GB:ABD65162.1)  
At1g34740	chr1:012722224	0.0	C/12722224-12728189	AT1G34740.1  mRNA_TE_gene  pseudo  gene_syn F11O6.8  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G05280.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G27780.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G42730.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653); contains InterPro domain Tetracyclin repressor-like, C-terminal; (InterPro:IPR011075)  
At1g34750	chr1:012737689	0.0	C/12737689-12737727,12737290-12737529,12736931-12737207,12736604-12736758,12736386-12736523	AT1G34750.1  CDS  gene_syn F11O6.14  go_component plasma membrane|GO:0005886|17644812|IDA  go_function catalytic activity|GO:0003824||IEA  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT1G22280.1); Has 4748 Blast hits to 4743 proteins in 500 species: Archae - 5; Bacteria - 676; Metazoa - 1255; Fungi - 535; Plants - 1287; Viruses - 11; Other Eukaryotes - 979 (source: NCBI BLink).  protein_id AT1G34750.1p  transcript_id AT1G34750.1  protein_id AT1G34750.1p  transcript_id AT1G34750.1  
At1g34760	chr1:012745537	0.0	C/12745537-12745603,12744823-12745129,12744637-12744724,12744450-12744559,12744218-12744363,12744062-12744111	AT1G34760.1  CDS  gene_syn 14-3-3 PROTEIN GF14OMICRON, F11O6.13, GENERAL REGULATORY FACTOR 11, GF14 OMICRON, GRF11  gene GRF11  function Encodes a 14-3-3 protein. Binds H+-ATPase in response to blue light.  go_component cellular_component|GO:0005575||ND  go_function protein binding|GO:0005515||NAS  go_function amino acid binding|GO:0016597|10836149|TAS  go_function protein phosphorylated amino acid binding|GO:0045309|10631267|TAS  go_function ATPase binding|GO:0051117|15821287|IDA  product GRF11 (GENERAL REGULATORY FACTOR 11); ATPase binding / amino acid binding / protein binding / protein phosphorylated amino acid binding  note GENERAL REGULATORY FACTOR 11 (GRF11); FUNCTIONS IN: protein phosphorylated amino acid binding, protein binding, amino acid binding, ATPase binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: GRF10 (GENERAL REGULATORY FACTOR 10); ATP binding / protein binding / protein phosphorylated amino acid binding (TAIR:AT1G22300.2); Has 2093 Blast hits to 2085 proteins in 293 species: Archae - 0; Bacteria - 0; Metazoa - 1032; Fungi - 217; Plants - 540; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink).  protein_id AT1G34760.1p  transcript_id AT1G34760.1  protein_id AT1G34760.1p  transcript_id AT1G34760.1  
At1g34760	chr1:012745537	0.0	C/12745537-12745603,12744823-12745129,12744637-12744724,12744450-12744559,12744218-12744363,12744077-12744111,12743981-12743986	AT1G34760.2  CDS  gene_syn 14-3-3 PROTEIN GF14OMICRON, F11O6.13, GENERAL REGULATORY FACTOR 11, GF14 OMICRON, GRF11  gene GRF11  function Encodes a 14-3-3 protein. Binds H+-ATPase in response to blue light.  go_component cellular_component|GO:0005575||ND  go_function protein binding|GO:0005515||NAS  go_function amino acid binding|GO:0016597|10836149|TAS  go_function protein phosphorylated amino acid binding|GO:0045309|10631267|TAS  go_function ATPase binding|GO:0051117|15821287|IDA  product GRF11 (GENERAL REGULATORY FACTOR 11); ATPase binding / amino acid binding / protein binding / protein phosphorylated amino acid binding  note GENERAL REGULATORY FACTOR 11 (GRF11); FUNCTIONS IN: protein phosphorylated amino acid binding, protein binding, amino acid binding, ATPase binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: GRF10 (GENERAL REGULATORY FACTOR 10); ATP binding / protein binding / protein phosphorylated amino acid binding (TAIR:AT1G22300.1); Has 2093 Blast hits to 2085 proteins in 293 species: Archae - 0; Bacteria - 0; Metazoa - 1032; Fungi - 217; Plants - 540; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink).  protein_id AT1G34760.2p  transcript_id AT1G34760.2  protein_id AT1G34760.2p  transcript_id AT1G34760.2  
At1g34770	chr1:012746624	0.0	W/12746624-12746671,12746764-12747013,12747100-12747252,12748002-12748107,12748205-12748319,12748408-12748449	AT1G34770.1  CDS  gene_syn F11O6.12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MAGE-8 antigen-related  note MAGE-8 antigen-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: MAGE protein (InterPro:IPR002190); Has 1021 Blast hits to 1019 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 886; Fungi - 33; Plants - 28; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT1G34770.1p  transcript_id AT1G34770.1  protein_id AT1G34770.1p  transcript_id AT1G34770.1  
At1g34770	chr1:012746624	0.0	W/12746624-12746671,12746764-12747013,12747100-12747252,12748002-12748107,12748205-12748319,12748408-12748449	AT1G34770.2  CDS  gene_syn F11O6.12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MAGE-8 antigen-related  note MAGE-8 antigen-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: MAGE protein (InterPro:IPR002190); Has 1021 Blast hits to 1019 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 886; Fungi - 33; Plants - 28; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT1G34770.2p  transcript_id AT1G34770.2  protein_id AT1G34770.2p  transcript_id AT1G34770.2  
At1g34780	chr1:012749936	0.0	C/12749936-12750124,12749650-12749837,12749442-12749566,12748835-12749265	AT1G34780.1  CDS  gene_syn APR-like 4, ATAPRL4, F11O6.7, F11O6_7  gene ATAPRL4  function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5 -phosphosulfate reductase-like (APRL) group.  go_component endomembrane system|GO:0012505||IEA  go_process cell redox homeostasis|GO:0045454||IEA  product ATAPRL4 (APR-like 4)  note APR-like 4 (ATAPRL4); INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATAPRL6 (APR-like 6) (TAIR:AT4G08930.1); Has 773 Blast hits to 747 proteins in 145 species: Archae - 0; Bacteria - 2; Metazoa - 426; Fungi - 74; Plants - 176; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT1G34780.1p  transcript_id AT1G34780.1  protein_id AT1G34780.1p  transcript_id AT1G34780.1  
At1g34780	chr1:012749936	0.0	C/12749936-12750124,12749737-12749837,12749442-12749566,12748835-12749265	AT1G34780.2  CDS  gene_syn APR-like 4, ATAPRL4, F11O6.7, F11O6_7  gene ATAPRL4  function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5 -phosphosulfate reductase-like (APRL) group.  go_component endomembrane system|GO:0012505||IEA  product ATAPRL4 (APR-like 4)  note APR-like 4 (ATAPRL4); LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATAPRL6 (APR-like 6) (TAIR:AT4G08930.1); Has 70 Blast hits to 70 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G34780.2p  transcript_id AT1G34780.2  protein_id AT1G34780.2p  transcript_id AT1G34780.2  
At1g34842	chr1:012751190	0.0	C/12751190-12752376	AT1G34842.1  mRNA_TE_gene  pseudo  gene_syn F11O6.11  note Transposable element gene, non-LTR retroelement reverse transcriptase  
At1g34844	chr1:012751268	0.0	W/12751268-12752617	AT1G34844.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G34842  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G34844.1  
At1g34904	chr1:012753487	0.0	W/12753487-12754922	AT1G34904.1  mRNA_TE_gene  pseudo  gene_syn F11O6.9  note Transposable element gene, copia-like retrotransposon family, has a 2.6e-90 P-value blast match to GB:AAB82754 retrofit (TY1_Copia-element) (Oryza longistaminata)  
At1g34967	chr1:012755620	0.0	W/12755620-12759846	AT1G34967.1  mRNA_TE_gene  pseudo  gene_syn F11O6.6  note Transposable element gene, copia-like retrotransposon family, has a 8.6e-83 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At1g34790	chr1:012763953	0.0	W/12763953-12764435,12765061-12765489	AT1G34790.1  CDS  gene_syn TT1, transparent testa 1  gene TT1  function Encodes a zinc finger protein; involved in photomorphogenesis, flavonoid biosynthesis, flower and seed development.  go_component nucleus|GO:0005634|11782451|IEP  go_component nucleus|GO:0005634|11782451|TAS  go_process flavonoid biosynthetic process|GO:0009813|8528278|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11782451|TAS  product TT1 (transparent testa 1); transcription factor  note transparent testa 1 (TT1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: flavonoid biosynthetic process; LOCATED IN: nucleus; EXPRESSED IN: seed; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) protein (WIP5) (TAIR:AT1G51220.1); Has 13397 Blast hits to 8658 proteins in 128 species: Archae - 0; Bacteria - 0; Metazoa - 12686; Fungi - 56; Plants - 379; Viruses - 0; Other Eukaryotes - 276 (source: NCBI BLink).  protein_id AT1G34790.1p  transcript_id AT1G34790.1  protein_id AT1G34790.1p  transcript_id AT1G34790.1  
At1g34792	chr1:012766373	0.0	C/12766373-12766651	AT1G34792.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34825.1); Has 42 Blast hits to 42 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G34792.1p  transcript_id AT1G34792.1  protein_id AT1G34792.1p  transcript_id AT1G34792.1  
At1g34795	chr1:012769753	0.0	C/12769753-12770031	AT1G34795.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34830.1); Has 42 Blast hits to 42 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G34795.1p  transcript_id AT1G34795.1  protein_id AT1G34795.1p  transcript_id AT1G34795.1  
At1g34797	chr1:012771928	0.0	W/12771928-12772219	AT1G34797.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G34790; TT1 (TRANSPARENT TESTA 1); transcription factor  
At1g34800	chr1:012773164	0.0	C/12773164-12773442	AT1G34800.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34825.1); Has 42 Blast hits to 42 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G34800.1p  transcript_id AT1G34800.1  protein_id AT1G34800.1p  transcript_id AT1G34800.1  
At1g34803	chr1:012775342	0.0	W/12775342-12775633	AT1G34803.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G34790; TT1 (TRANSPARENT TESTA 1); transcription factor  
At1g34805	chr1:012776578	0.0	C/12776578-12776856	AT1G34805.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34825.1); Has 42 Blast hits to 42 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G34805.1p  transcript_id AT1G34805.1  protein_id AT1G34805.1p  transcript_id AT1G34805.1  
At1g34808	chr1:012778756	0.0	W/12778756-12779047	AT1G34808.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G34790; TT1 (TRANSPARENT TESTA 1); transcription factor  
At1g34810	chr1:012779992	0.0	C/12779992-12780270	AT1G34810.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34830.1); Has 42 Blast hits to 42 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G34810.1p  transcript_id AT1G34810.1  protein_id AT1G34810.1p  transcript_id AT1G34810.1  
At1g34813	chr1:012782171	0.0	W/12782171-12782462	AT1G34813.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G34790; TT1 (TRANSPARENT TESTA 1); transcription factor  
At1g34815	chr1:012783406	0.0	C/12783406-12783684	AT1G34815.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34830.1); Has 42 Blast hits to 42 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G34815.1p  transcript_id AT1G34815.1  protein_id AT1G34815.1p  transcript_id AT1G34815.1  
At1g34818	chr1:012785581	0.0	W/12785581-12785872	AT1G34818.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G34790; TT1 (TRANSPARENT TESTA 1); transcription factor  
At1g34820	chr1:012786817	0.0	C/12786817-12787095	AT1G34820.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34825.1); Has 42 Blast hits to 42 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G34820.1p  transcript_id AT1G34820.1  protein_id AT1G34820.1p  transcript_id AT1G34820.1  
At1g34823	chr1:012788995	0.0	W/12788995-12789286	AT1G34823.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G34790; TT1 (TRANSPARENT TESTA 1); transcription factor  
At1g34825	chr1:012790231	0.0	C/12790231-12790509	AT1G34825.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34820.1); Has 42 Blast hits to 42 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G34825.1p  transcript_id AT1G34825.1  protein_id AT1G34825.1p  transcript_id AT1G34825.1  
At1g34828	chr1:012792409	0.0	W/12792409-12792700	AT1G34828.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G34790; TT1 (TRANSPARENT TESTA 1); transcription factor  
At1g34830	chr1:012793645	0.0	C/12793645-12793923	AT1G34830.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34815.1); Has 42 Blast hits to 42 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G34830.1p  transcript_id AT1G34830.1  protein_id AT1G34830.1p  transcript_id AT1G34830.1  
At1g34836	chr1:012795824	0.0	W/12795824-12796115	AT1G34836.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G34790; TT1 (TRANSPARENT TESTA 1); transcription factor  
At1g34840	chr1:012796984	0.0	C/12796984-12797247	AT1G34840.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34850.1); Has 42 Blast hits to 42 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G34840.1p  transcript_id AT1G34840.1  protein_id AT1G34840.1p  transcript_id AT1G34840.1  
At1g34850	chr1:012800308	0.0	C/12800308-12800571	AT1G34850.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34840.1); Has 42 Blast hits to 42 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G34850.1p  transcript_id AT1G34850.1  protein_id AT1G34850.1p  transcript_id AT1G34850.1  
At1g34860	chr1:012803708	0.0	C/12803708-12803986	AT1G34860.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34825.1); Has 42 Blast hits to 42 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G34860.1p  transcript_id AT1G34860.1  protein_id AT1G34860.1p  transcript_id AT1G34860.1  
At1g34910	chr1:012804834	0.0	W/12804834-12804966,12805069-12805334	AT1G34910.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G35030.1); Has 13 Blast hits to 13 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G34910.1p  transcript_id AT1G34910.1  protein_id AT1G34910.1p  transcript_id AT1G34910.1  
At1g34930	chr1:012807121	0.0	C/12807121-12807399	AT1G34930.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34825.1); Has 42 Blast hits to 42 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G34930.1p  transcript_id AT1G34930.1  protein_id AT1G34930.1p  transcript_id AT1G34930.1  
At1g35030	chr1:012808246	0.0	W/12808246-12808447,12808552-12808767,12808863-12808948,12809335-12809481	AT1G35030.1  CDS  gene_syn F11O6.5, F11O6_5  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34910.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G35030.1p  transcript_id AT1G35030.1  protein_id AT1G35030.1p  transcript_id AT1G35030.1  
At1g35035	chr1:012811030	0.0	C/12811030-12811308	AT1G35035.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34860.1); Has 42 Blast hits to 42 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G35035.1p  transcript_id AT1G35035.1  protein_id AT1G35035.1p  transcript_id AT1G35035.1  
At1g35040	chr1:012812157	0.0	W/12812157-12812279,12812372-12812569	AT1G35040.1  CDS  gene_syn F11O6.10, F11O6_10  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34910.1); Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G35040.1p  transcript_id AT1G35040.1  protein_id AT1G35040.1p  transcript_id AT1G35040.1  
At1g35050	chr1:012814081	0.0	W/12814081-12816016	AT1G35050.1  mRNA_TE_gene  pseudo  gene_syn F11O6.4, F11O6_4  note Transposable element gene, copia-like retrotransposon family, has a 1.8e-61 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)  
At1g35060	chr1:012820034	0.0	W/12820034-12822787	AT1G35060.1  mRNA_TE_gene  pseudo  gene_syn F11O6.3, F11O6_3  note Transposable element gene, Mutator-like transposase family, has a 1.9e-61 P-value blast match to Q9S9L6 /322-461 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g35080	chr1:012826125	0.0	C/12826125-12828202	AT1G35080.1  mRNA_TE_gene  pseudo  gene_syn F11O6.16, F11O6_16  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42490.1)  
At1g35090	chr1:012828873	0.0	C/12828873-12829881	AT1G35090.1  mRNA_TE_gene  pseudo  gene_syn F11O6.1, F11O6_1  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G19300.1); similar to hypothetical protein 31.t00082 [Brassica oleracea] (GB:ABD65101.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At1g35100	chr1:012830552	0.0	W/12830552-12831339	AT1G35100.1  mRNA_TE_gene  pseudo  gene_syn T32G9.34, T32G9_34  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G36035.1)  
At1g35110	chr1:012833398	0.0	C/12833398-12840997	AT1G35110.1  mRNA_TE_gene  pseudo  gene_syn T32G9.33, T32G9_33  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G28970.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G19320.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G36020.1); similar to hypothetical protein 23.t00036 [Brassica oleracea] (GB:ABD65624.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At1g35112	chr1:012840228	0.0	C/12840228-12841118	AT1G35112.1  mRNA_TE_gene  pseudo  gene_syn SADHU NON-CODING RETROTRANSPOSON, SADHU2-1  gene SADHU2-1  function Member of Sadhu non-coding retrotransposon family  note Transposable element gene  
At1g35115	chr1:012842158	0.0	W/12842158-12845455	AT1G35115.1  mRNA_TE_gene  pseudo  gene_syn T32G9.48  note Transposable element gene, copia-like retrotransposon family, has a 1.1e-168 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At1g35120	chr1:012846097	0.0	C/12846097-12846425	AT1G35120.1  mRNA_TE_gene  pseudo  gene_syn T32G9.44  note Transposable element gene, pseudogene, hypothetical protein  
At1g35130	chr1:012848822	0.0	W/12848822-12849507	AT1G35130.1  mRNA_TE_gene  pseudo  gene_syn T32G9.49  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.1e-28 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g35140	chr1:012852089	0.0	W/12852089-12853018	AT1G35140.1  CDS  gene_syn EXL7, EXORDIUM LIKE 7, PHI-1, PHOSPHATE-INDUCED 1, T32G9.32, T32G9_32  gene PHI-1  function At1g35140 (At1g35140/T32G9_32) mRNA, complete cds  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product PHI-1 (PHOSPHATE-INDUCED 1)  note PHOSPHATE-INDUCED 1 (PHI-1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Phosphate-induced protein 1 conserved region (InterPro:IPR006766); BEST Arabidopsis thaliana protein match is: EXO (EXORDIUM) (TAIR:AT4G08950.1); Has 234 Blast hits to 233 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 232; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G35140.1p  transcript_id AT1G35140.1  protein_id AT1G35140.1p  transcript_id AT1G35140.1  
At1g35143	chr1:012855008	0.0	C/12855008-12855133	AT1G35143.1  mRNA_TE_gene  pseudo  gene_syn T32G9.43, T32G9_43  note Transposable element gene, similar to replication protein-related [Arabidopsis thaliana] (TAIR:AT1G52950.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G64410.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340)  
At1g35146	chr1:012856198	0.0	C/12856198-12860244	AT1G35146.1  mRNA_TE_gene  pseudo  gene_syn T32G9.42  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.9e-33 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At1g35150	chr1:012865973	0.0	C/12865973-12866238,12865103-12865809,12864559-12864707,12864326-12864487,12864158-12864253	AT1G35150.1  CDS  gene_syn T32G9.31, T32G9_31  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: hAT dimerisation domain-containing protein / transposase-related (TAIR:AT2G06500.1); Has 212 Blast hits to 190 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 116; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G35150.1p  transcript_id AT1G35150.1  protein_id AT1G35150.1p  transcript_id AT1G35150.1  
At1g35160	chr1:012867264	0.0	W/12867264-12867758,12867849-12867971,12868056-12868172,12868446-12868514	AT1G35160.1  CDS  gene_syn 14-3-3 PROTEIN G-BOX FACTOR14 PHI, 14-3-3PHI, GENERAL REGULATORY FACTOR 4, GF14 PHI, GF14 PROTEIN PHI CHAIN, GRF4, T32G9.30, T32G9_30  gene GF14 PHI  function GF14 protein phi chain member of 14-3-3 protein family. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1  go_component plasma membrane|GO:0005886|17317660|IDA  go_component nuclear envelope|GO:0005635||TAS  go_component cytoplasm|GO:0005737||TAS  go_component plasma membrane|GO:0005886||TAS  go_process brassinosteroid mediated signaling|GO:0009742|17681130|IPI  go_function protein binding|GO:0005515||ISS  go_function protein phosphorylated amino acid binding|GO:0045309|10631267|TAS  product GF14 PHI (GF14 PROTEIN PHI CHAIN); protein binding / protein phosphorylated amino acid binding  note GF14 PROTEIN PHI CHAIN (GF14 PHI); FUNCTIONS IN: protein phosphorylated amino acid binding, protein binding; INVOLVED IN: brassinosteroid mediated signaling; LOCATED IN: nuclear envelope, plasma membrane, cytoplasm; EXPRESSED IN: cotyledon, guard cell, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: 14-3-3-like protein GF14 chi / general regulatory factor 1 (GRF1) (TAIR:AT4G09000.1); Has 2091 Blast hits to 2082 proteins in 294 species: Archae - 0; Bacteria - 2; Metazoa - 1026; Fungi - 218; Plants - 541; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink).  protein_id AT1G35160.1p  transcript_id AT1G35160.1  protein_id AT1G35160.1p  transcript_id AT1G35160.1  
At1g35170	chr1:012871771	0.0	C/12871771-12872139,12871517-12871636,12871062-12871157,12870738-12870842	AT1G35170.1  CDS  gene_syn T32G9.29, T32G9_29  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G35180.1); Has 92 Blast hits to 92 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 2; Plants - 25; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT1G35170.1p  transcript_id AT1G35170.1  protein_id AT1G35170.1p  transcript_id AT1G35170.1  
At1g35180	chr1:012878276	0.0	C/12878276-12878644,12878022-12878141,12877579-12877674,12877230-12877340	AT1G35180.1  CDS  gene_syn T32G9.28, T32G9_28  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G35170.1); Has 128 Blast hits to 128 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 4; Plants - 41; Viruses - 3; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT1G35180.1p  transcript_id AT1G35180.1  protein_id AT1G35180.1p  transcript_id AT1G35180.1  
At1g35181	chr1:012879306	0.0	W/12879306-12879470	AT1G35181.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G35181.1p  transcript_id AT1G35181.1  protein_id AT1G35181.1p  transcript_id AT1G35181.1  
At1g35183	chr1:012884438	0.0	W/12884438-12884590	AT1G35183.1  CDS  gene_syn T32G9.50, T32G9_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G35183.1p  transcript_id AT1G35183.1  protein_id AT1G35183.1p  transcript_id AT1G35183.1  
At1g35186	chr1:012885606	0.0	C/12885606-12886983	AT1G35186.1  mRNA_TE_gene  pseudo  gene_syn T32G9.51  function similarity to non-LTR retroelement protein  note Transposable element gene, pseudogene, expressed protein  
At1g35190	chr1:012890544	0.0	W/12890544-12890636,12890774-12890969,12891050-12891148,12891225-12891276,12891419-12891540,12891629-12891726,12891813-12891871,12892002-12892058,12892150-12892195,12892378-12892457,12892545-12892632	AT1G35190.1  CDS  gene_syn T32G9.27, T32G9_27  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process alkaloid biosynthetic process|GO:0009821||ISS  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding; INVOLVED IN: alkaloid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (TAIR:AT3G46490.1); Has 6057 Blast hits to 6034 proteins in 674 species: Archae - 0; Bacteria - 734; Metazoa - 135; Fungi - 704; Plants - 2814; Viruses - 0; Other Eukaryotes - 1670 (source: NCBI BLink).  protein_id AT1G35190.1p  transcript_id AT1G35190.1  protein_id AT1G35190.1p  transcript_id AT1G35190.1  
At1g35190	chr1:012890544	0.0	W/12890544-12890636,12890774-12890969,12891050-12891148,12891225-12891276,12891488-12891540,12891629-12891726,12891813-12891871,12892002-12892058,12892150-12892195,12892378-12892457,12892545-12892632	AT1G35190.2  CDS  gene_syn T32G9.27, T32G9_27  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process alkaloid biosynthetic process|GO:0009821||ISS  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding; INVOLVED IN: alkaloid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (TAIR:AT3G46490.1); Has 5915 Blast hits to 5896 proteins in 672 species: Archae - 0; Bacteria - 732; Metazoa - 133; Fungi - 696; Plants - 2732; Viruses - 0; Other Eukaryotes - 1622 (source: NCBI BLink).  protein_id AT1G35190.2p  transcript_id AT1G35190.2  protein_id AT1G35190.2p  transcript_id AT1G35190.2  
At1g35200	chr1:012893339	0.0	C/12893339-12893747	AT1G35200.1  pseudogenic_transcript  pseudo  gene_syn T32G9.26, T32G9_26  note 60S ribosomal protein L4/L1 (RPL4B), pseudogene, similar to 60S ribosomal protein L4 (fragment) GB:P49691 from (Arabidopsis thaliana); blastp match of 50% identity and 6.3e-17 P-value to SP|Q9XF97|RL4_PRUAR 60S ribosomal protein L4 (L1). (Apricot) {Prunus armeniaca}  
At1g35210	chr1:012896914	0.0	C/12896914-12897384	AT1G35210.1  CDS  gene_syn T32G9.25, T32G9_25  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22470.1); Has 42 Blast hits to 42 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G35210.1p  transcript_id AT1G35210.1  protein_id AT1G35210.1p  transcript_id AT1G35210.1  
At1g35220	chr1:012909293	0.0	W/12909293-12909420,12909515-12909632,12910042-12910138,12910234-12910340,12910574-12910696,12910829-12910982,12911313-12911373,12911473-12911849,12911983-12913588,12913670-12913916	AT1G35220.1  CDS  gene_syn T9I1.1, T9I1_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 247 Blast hits to 143 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 177; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT1G35220.1p  transcript_id AT1G35220.1  protein_id AT1G35220.1p  transcript_id AT1G35220.1  
At1g35230	chr1:012917184	0.0	W/12917184-12917585	AT1G35230.1  CDS  gene_syn AGP5, ARABINOGALACTAN-PROTEIN 5, T9I1.2, T9I1_2  gene AGP5  function Encodes arabinogalactan-protein (AGP5).  product AGP5 (ARABINOGALACTAN-PROTEIN 5)  note ARABINOGALACTAN-PROTEIN 5 (AGP5); EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 9 growth stages; Has 47438 Blast hits to 20485 proteins in 1141 species: Archae - 198; Bacteria - 11184; Metazoa - 10863; Fungi - 4319; Plants - 7240; Viruses - 1882; Other Eukaryotes - 11752 (source: NCBI BLink).  protein_id AT1G35230.1p  transcript_id AT1G35230.1  protein_id AT1G35230.1p  transcript_id AT1G35230.1  
At1g35240	chr1:012930475	0.0	C/12930475-12930523,12930279-12930397,12930018-12930113,12929863-12929919,12929624-12929767,12929460-12929532,12929278-12929368,12929037-12929201,12928817-12928936,12928655-12928727,12928424-12928562,12927907-12928277,12927634-12927821,12927457-12927544	AT1G35240.1  CDS  gene_syn ARF20, AUXIN RESPONSE FACTOR 20, T9I1.3, T9I1_3  gene ARF20  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ARF20 (AUXIN RESPONSE FACTOR 20); transcription factor  note AUXIN RESPONSE FACTOR 20 (ARF20); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: ARF21 (AUXIN RESPONSE FACTOR 21); transcription factor (TAIR:AT1G34410.1); Has 1364 Blast hits to 1153 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1364; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G35240.1p  transcript_id AT1G35240.1  protein_id AT1G35240.1p  transcript_id AT1G35240.1  
At1g35242	chr1:012931244	0.0	W/12931244-12931396	AT1G35242.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G35242.1p  transcript_id AT1G35242.1  protein_id AT1G35242.1p  transcript_id AT1G35242.1  
At1g35250	chr1:012934326	0.0	C/12934326-12934465,12933696-12933796,12933444-12933553,12933264-12933359,12933046-12933165	AT1G35250.1  CDS  gene_syn T9I1.4, T9I1_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function acyl-CoA thioesterase activity|GO:0016291||ISS  go_function hydrolase activity, acting on ester bonds|GO:0016788||ISS  product thioesterase family protein  note thioesterase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Thioesterase superfamily (InterPro:IPR006683); BEST Arabidopsis thaliana protein match is: thioesterase family protein (TAIR:AT1G35290.1); Has 910 Blast hits to 909 proteins in 251 species: Archae - 2; Bacteria - 508; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 358 (source: NCBI BLink).  protein_id AT1G35250.1p  transcript_id AT1G35250.1  protein_id AT1G35250.1p  transcript_id AT1G35250.1  
At1g35255	chr1:012935947	0.0	C/12935947-12936330	AT1G35255.1  CDS  product unknown protein  note unknown protein; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G35255.1p  transcript_id AT1G35255.1  protein_id AT1G35255.1p  transcript_id AT1G35255.1  
At1g35260	chr1:012937512	0.0	C/12937512-12937689,12937059-12937339	AT1G35260.1  CDS  gene_syn MLP-LIKE PROTEIN 165, MLP165, T9I1.17, T9I1_17  gene MLP165  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product MLP165 (MLP-LIKE PROTEIN 165)  note MLP-LIKE PROTEIN 165 (MLP165); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: MLP168 (MLP-LIKE PROTEIN 168) (TAIR:AT1G35310.1); Has 243 Blast hits to 220 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 243; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G35260.1p  transcript_id AT1G35260.1  protein_id AT1G35260.1p  transcript_id AT1G35260.1  
At1g35270	chr1:012939579	0.0	C/12939579-12941565	AT1G35270.1  pseudogenic_transcript  pseudo  gene_syn T9I1.16  note pseudogene, hypothetical protein  
At1g35280	chr1:012944137	0.0	W/12944137-12946494	AT1G35280.1  mRNA_TE_gene  pseudo  gene_syn T9I1.5, T9I1_5  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 2.5e-207 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At1g35290	chr1:012948639	0.0	C/12948639-12948778,12948372-12948472,12948163-12948272,12947975-12948070,12947760-12947882	AT1G35290.1  CDS  gene_syn T9I1.6, T9I1_6  go_process biological_process|GO:0008150||ND  go_function acyl-CoA thioesterase activity|GO:0016291||ISS  go_function hydrolase activity, acting on ester bonds|GO:0016788||ISS  product thioesterase family protein  note thioesterase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Thioesterase superfamily (InterPro:IPR006683); BEST Arabidopsis thaliana protein match is: thioesterase family protein (TAIR:AT1G35250.1); Has 777 Blast hits to 776 proteins in 227 species: Archae - 2; Bacteria - 453; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 280 (source: NCBI BLink).  protein_id AT1G35290.1p  transcript_id AT1G35290.1  protein_id AT1G35290.1p  transcript_id AT1G35290.1  
At1g35300	chr1:012950376	0.0	W/12950376-12952882	AT1G35300.1  mRNA_TE_gene  pseudo  gene_syn T9I1.7, T9I1_7  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 1.1e-38 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At1g35310	chr1:012956847	0.0	C/12956847-12957024,12956428-12956705	AT1G35310.1  CDS  gene_syn MLP-LIKE PROTEIN 168, MLP168, T9I1.8, T9I1_8  gene MLP168  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product MLP168 (MLP-LIKE PROTEIN 168)  note MLP-LIKE PROTEIN 168 (MLP168); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: MLP165 (MLP-LIKE PROTEIN 165) (TAIR:AT1G35260.1); Has 225 Blast hits to 203 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 225; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G35310.1p  transcript_id AT1G35310.1  protein_id AT1G35310.1p  transcript_id AT1G35310.1  
At1g35320	chr1:012962763	0.0	C/12962763-12962853,12961600-12961683,12961140-12961319,12960945-12961027,12960681-12960805,12960541-12960589	AT1G35320.1  CDS  gene_syn T9I1.9, T9I1_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09260.1); Has 9 Blast hits to 9 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G35320.1p  transcript_id AT1G35320.1  protein_id AT1G35320.1p  transcript_id AT1G35320.1  
At1g35330	chr1:012965046	0.0	W/12965046-12965964,12966049-12966113	AT1G35330.1  CDS  gene_syn T9I1.10, T9I1_10  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G35000.1); Has 7073 Blast hits to 7050 proteins in 226 species: Archae - 0; Bacteria - 6; Metazoa - 2350; Fungi - 612; Plants - 2849; Viruses - 46; Other Eukaryotes - 1210 (source: NCBI BLink).  protein_id AT1G35330.1p  transcript_id AT1G35330.1  protein_id AT1G35330.1p  transcript_id AT1G35330.1  
At1g35333	chr1:012970271	0.0	W/12970271-12970420	AT1G35333.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G35333.1p  transcript_id AT1G35333.1  protein_id AT1G35333.1p  transcript_id AT1G35333.1  
At1g35340	chr1:012977768	0.0	W/12977768-12978013,12978080-12978148,12978236-12978355,12978440-12978514,12978941-12979078,12979264-12979405,12979589-12979749	AT1G35340.1  CDS  gene_syn T9I1.11, T9I1_11  go_component chloroplast|GO:0009507|18431481|IDA  go_process ATP-dependent proteolysis|GO:0006510||IEA  go_function ATP-dependent peptidase activity|GO:0004176||IEA  go_function ATP-dependent peptidase activity|GO:0004176||ISS  product ATP-dependent protease La (LON) domain-containing protein  note ATP-dependent protease La (LON) domain-containing protein; FUNCTIONS IN: ATP-dependent peptidase activity; INVOLVED IN: ATP-dependent proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, lon N-terminal (InterPro:IPR003111); Has 156 Blast hits to 156 proteins in 51 species: Archae - 0; Bacteria - 65; Metazoa - 1; Fungi - 8; Plants - 34; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT1G35340.1p  transcript_id AT1G35340.1  protein_id AT1G35340.1p  transcript_id AT1G35340.1  
At1g35340	chr1:012978239	0.0	W/12978239-12978355,12978440-12978514,12978941-12979078,12979264-12979405,12979589-12979749	AT1G35340.2  CDS  gene_syn T9I1.11, T9I1_11  go_component chloroplast|GO:0009507|18431481|IDA  go_function ATP-dependent peptidase activity|GO:0004176||ISS  product ATP-dependent protease La (LON) domain-containing protein  note ATP-dependent protease La (LON) domain-containing protein; FUNCTIONS IN: ATP-dependent peptidase activity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 17 Blast hits to 17 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G35340.2p  transcript_id AT1G35340.2  protein_id AT1G35340.2p  transcript_id AT1G35340.2  
At1g35340	chr1:012978239	0.0	W/12978239-12978355,12978440-12978514,12978941-12979078,12979264-12979405,12979589-12979749	AT1G35340.3  CDS  gene_syn T9I1.11, T9I1_11  go_component chloroplast|GO:0009507|18431481|IDA  go_function ATP-dependent peptidase activity|GO:0004176||ISS  product ATP-dependent protease La (LON) domain-containing protein  note ATP-dependent protease La (LON) domain-containing protein; FUNCTIONS IN: ATP-dependent peptidase activity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 17 Blast hits to 17 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G35340.3p  transcript_id AT1G35340.3  protein_id AT1G35340.3p  transcript_id AT1G35340.3  
At1g35350	chr1:012984055	0.0	C/12984055-12984583,12983689-12983971,12983561-12983609,12983407-12983478,12983187-12983316,12982867-12982987,12982516-12982774,12982322-12982426,12982205-12982249,12981655-12982080,12981439-12981575,12981251-12981350	AT1G35350.1  CDS  gene_syn T9I1.12, T9I1_12  go_component integral to membrane|GO:0016021||IEA  go_component integral to membrane|GO:0016021||ISS  product unknown protein  note LOCATED IN: integral to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: EXS, C-terminal (InterPro:IPR004342), SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: EXS family protein / ERD1/XPR1/SYG1 family protein (TAIR:AT1G26730.1); Has 734 Blast hits to 697 proteins in 158 species: Archae - 0; Bacteria - 21; Metazoa - 234; Fungi - 245; Plants - 125; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).  protein_id AT1G35350.1p  transcript_id AT1G35350.1  protein_id AT1G35350.1p  transcript_id AT1G35350.1  
At1g35360	chr1:012990113	0.0	W/12990113-12990867	AT1G35360.1  mRNA_TE_gene  pseudo  gene_syn T9I1.15  note Transposable element gene, copia-like retrotransposon family, has a 7.5e-38 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)  
At1g35365	chr1:012991392	0.0	W/12991392-12991682,12991858-12991943,12991983-12992145	AT1G35365.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1184 (InterPro:IPR009568); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27900.1); Has 10 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G35365.1p  transcript_id AT1G35365.1  protein_id AT1G35365.1p  transcript_id AT1G35365.1  
At1g35370	chr1:013000586	0.0	W/13000586-13005078	AT1G35370.1  mRNA_TE_gene  pseudo  gene_syn T9I1.13, T9I1_13  note Transposable element gene, gypsy-like retrotransposon family, has a 8.7e-191 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At1g35375	chr1:013005863	0.0	C/13005863-13006187,13005673-13005770	AT1G35375.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G35375.1p  transcript_id AT1G35375.1  protein_id AT1G35375.1p  transcript_id AT1G35375.1  
At1g35380	chr1:013006356	0.0	C/13006356-13007926	AT1G35380.1  mRNA_TE_gene  pseudo  gene_syn F12A4.14, F12A4_14  note Transposable element gene, retrotransposon family  
At1g35390	chr1:013008911	0.0	W/13008911-13014607	AT1G35390.1  mRNA_TE_gene  pseudo  gene_syn F12A4.8  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.6e-43 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)  
At1g35400	chr1:013018289	0.0	W/13018289-13018335,13018452-13018568,13018811-13019051	AT1G35400.1  CDS  gene_syn F12A4.7, F12A4_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1184 (InterPro:IPR009568), Uncharacterised conserved protein UCP031143 (InterPro:IPR016970); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G35410.1); Has 12 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G35400.1p  transcript_id AT1G35400.1  protein_id AT1G35400.1p  transcript_id AT1G35400.1  
At1g35405	chr1:013019299	0.0	C/13019299-13023624	AT1G35405.1  mRNA_TE_gene  pseudo  gene_syn F12A4.6  note Transposable element gene, copia-like retrotransposon family, has a 2.3e-227 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)  
At1g35410	chr1:013024161	0.0	W/13024161-13024186,13024345-13024454,13024628-13024941	AT1G35410.1  CDS  gene_syn F12A4.5, F12A4_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, leaf whorl, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1184 (InterPro:IPR009568), Uncharacterised conserved protein UCP031143 (InterPro:IPR016970); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G35400.1); Has 10 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G35410.1p  transcript_id AT1G35410.1  protein_id AT1G35410.1p  transcript_id AT1G35410.1  
At1g35420	chr1:013026320	0.0	W/13026320-13026439,13026557-13026849,13026944-13027463	AT1G35420.1  CDS  gene_syn F12A4.4, F12A4_4  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_function hydrolase activity|GO:0016787||IEA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product dienelactone hydrolase family protein  note dienelactone hydrolase family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dienelactone hydrolase (InterPro:IPR002925); BEST Arabidopsis thaliana protein match is: dienelactone hydrolase family protein (TAIR:AT3G23600.1); Has 1696 Blast hits to 1695 proteins in 498 species: Archae - 16; Bacteria - 1093; Metazoa - 57; Fungi - 202; Plants - 150; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink).  protein_id AT1G35420.1p  transcript_id AT1G35420.1  protein_id AT1G35420.1p  transcript_id AT1G35420.1  
At1g35430	chr1:013030660	0.0	C/13030660-13031031	AT1G35430.1  CDS  gene_syn F12A4.3, F12A4_3  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 10 Blast hits to 10 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G35430.1p  transcript_id AT1G35430.1  protein_id AT1G35430.1p  transcript_id AT1G35430.1  
At1g35435	chr1:013033175	0.0	C/13033175-13033247,13032806-13032981	AT1G35435.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G35435.1p  transcript_id AT1G35435.1  protein_id AT1G35435.1p  transcript_id AT1G35435.1  
At1g35440	chr1:013035294	0.0	C/13035294-13036037	AT1G35440.1  CDS  gene_syn CYCLIN T1;1, CYCT1;1, F12A4.13, F12A4_13  gene CYCT1;1  go_component cellular_component|GO:0005575||ND  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase activity|GO:0004693||ISS  product CYCT1;1 (CYCLIN T1;1); cyclin-dependent protein kinase  note CYCLIN T1;1 (CYCT1;1); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like (InterPro:IPR011028), Transcription regulator cyclin (InterPro:IPR015429), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: cyclin family protein (TAIR:AT5G45190.1); Has 1414 Blast hits to 1414 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 860; Fungi - 265; Plants - 203; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT1G35440.1p  transcript_id AT1G35440.1  protein_id AT1G35440.1p  transcript_id AT1G35440.1  
At1g35450	chr1:013037410	0.0	C/13037410-13038752	AT1G35450.1  pseudogenic_transcript  pseudo  gene_syn F12A4.9  note pseudogene, similar to oj991113_30.20, similar to from GI:976278 (Arabidopsis thaliana); blastp match of 24% identity and 2.9e-11 P-value to GP|21741715|emb|CAD41338.1||AL662946 oj991113_30.20 {Oryza sativa (japonica cultivar-group)}  
At1g35460	chr1:013040092	0.0	W/13040092-13040547,13041034-13041168,13041269-13041334,13041676-13041744,13041854-13041907	AT1G35460.1  CDS  gene_syn F12A4.2, F12A4_2  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT4G09180.1); Has 1117 Blast hits to 1117 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 1112; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G35460.1p  transcript_id AT1G35460.1  protein_id AT1G35460.1p  transcript_id AT1G35460.1  
At1g35461	chr1:013043489	0.0	W/13043489-13043629	AT1G35461.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G35461.1p  transcript_id AT1G35461.1  protein_id AT1G35461.1p  transcript_id AT1G35461.1  
At1g35465	chr1:013046927	0.0	W/13046927-13047661	AT1G35465.1  mRNA_TE_gene  pseudo  gene_syn F12A4.12  note Transposable element gene, copia-like retrotransposon family, has a 1.2e-27 P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At1g35467	chr1:013049164	0.0	W/13049164-13049433	AT1G35467.1  CDS  gene_syn RALF-LIKE 5, RALFL5  gene RALFL5  function Rapid alkalinization factor (RALF) family protein. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  go_component apoplast|GO:0048046|12611624|ISS  go_process cell-cell signaling|GO:0007267|12611624|ISS  go_function signal transducer activity|GO:0004871|12611624|TAS  product RALFL5 (RALF-LIKE 5); signal transducer  note RALF-LIKE 5 (RALFL5); FUNCTIONS IN: signal transducer activity; INVOLVED IN: cell-cell signaling; LOCATED IN: apoplast; CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALFL29 (RALF-LIKE 29); signal transducer (TAIR:AT4G11653.1); Has 12 Blast hits to 12 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G35467.1p  transcript_id AT1G35467.1  protein_id AT1G35467.1p  transcript_id AT1G35467.1  
At1g35470	chr1:013054531	0.0	C/13054531-13054922,13053949-13054095,13053720-13053806,13053580-13053625,13053161-13053237,13052875-13053037,13052655-13052723,13052508-13052567,13052049-13052135,13051636-13051911	AT1G35470.2  CDS  gene_syn F12A4.1, F12A4_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SPla/RYanodine receptor (SPRY) domain-containing protein  note SPla/RYanodine receptor (SPRY) domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SPla/RYanodine receptor subgroup (InterPro:IPR018355), CTLH, C-terminal to LisH motif (InterPro:IPR006595), B302 (SPRY)-like (InterPro:IPR001870), LisH dimerisation motif (InterPro:IPR006594), CT11-RanBPM (InterPro:IPR013144), SPla/RYanodine receptor SPRY (InterPro:IPR003877); BEST Arabidopsis thaliana protein match is: SPla/RYanodine receptor (SPRY) domain-containing protein (TAIR:AT4G09340.1); Has 875 Blast hits to 830 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 419; Fungi - 224; Plants - 106; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink).  protein_id AT1G35470.2p  transcript_id AT1G35470.2  protein_id AT1G35470.2p  transcript_id AT1G35470.2  
At1g35470	chr1:013054531	0.0	C/13054531-13054922,13053949-13054095,13053720-13053806,13053580-13053625,13053161-13053237,13052875-13053037,13052655-13052723,13052514-13052567,13052049-13052135,13051636-13051911	AT1G35470.1  CDS  gene_syn F12A4.1, F12A4_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SPla/RYanodine receptor (SPRY) domain-containing protein  note SPla/RYanodine receptor (SPRY) domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: B302 (SPRY)-like (InterPro:IPR001870), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), CT11-RanBPM (InterPro:IPR013144), SPla/RYanodine receptor SPRY (InterPro:IPR003877); BEST Arabidopsis thaliana protein match is: SPla/RYanodine receptor (SPRY) domain-containing protein (TAIR:AT4G09340.1); Has 857 Blast hits to 814 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 415; Fungi - 215; Plants - 103; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).  protein_id AT1G35470.1p  transcript_id AT1G35470.1  protein_id AT1G35470.1p  transcript_id AT1G35470.1  
At1g35480	chr1:013055398	0.0	C/13055398-13056364	AT1G35480.1  mRNA_TE_gene  pseudo  gene_syn F12A4.15, F12A4_15  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 8.9e-45 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At1g35490	chr1:013061856	0.0	W/13061856-13062385,13062600-13062675,13062780-13062906,13062997-13063166	AT1G35490.1  CDS  gene_syn F12A4.11, F12A4_11  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product bZIP family transcription factor  note bZIP family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: bZIP family transcription factor (TAIR:AT1G58110.2); Has 283 Blast hits to 283 proteins in 30 species: Archae - 0; Bacteria - 2; Metazoa - 17; Fungi - 6; Plants - 243; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G35490.1p  transcript_id AT1G35490.1  protein_id AT1G35490.1p  transcript_id AT1G35490.1  
At1g35500	chr1:013066087	0.0	W/13066087-13066426,13066520-13066596	AT1G35500.1  CDS  gene_syn F12A4.10, F12A4_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G35614.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G35500.1p  transcript_id AT1G35500.1  protein_id AT1G35500.1p  transcript_id AT1G35500.1  
At1g35501	chr1:013067251	0.0	W/13067251-13067335	AT1G35501.1  miRNA  gene_syn MICRORNA773A, MIR773A  gene MIR773A  function Encodes a microRNA that targets MET2. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUUGCUUCCAGCUUUUGUCUC  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR773A (MICRORNA773A); miRNA  transcript_id AT1G35501.1  
At1g35510	chr1:013071486	0.0	W/13071486-13071878,13071964-13072101,13072194-13072282,13072385-13072582,13072917-13073121,13073208-13073375,13073512-13073679,13074234-13074424,13074519-13074675	AT1G35510.1  CDS  gene_syn F15O4.45  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01480.1); Has 438 Blast hits to 423 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 438; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G35510.1p  transcript_id AT1G35510.1  protein_id AT1G35510.1p  transcript_id AT1G35510.1  
At1g35513	chr1:013076845	0.0	W/13076845-13077489	AT1G35513.1  pseudogenic_transcript  pseudo  gene_syn F15O4.44  function pseudogene of isochorismate synthase-related / isochorismate mutase-related  
At1g35515	chr1:013077926	0.0	W/13077926-13078058,13078138-13078267,13079890-13080265	AT1G35515.1  CDS  gene_syn HIGH RESPONSE TO OSMOTIC STRESS 10, HOS10, MYB8  gene HOS10  function Encodes a nuclear localized R2R3-type MYB transcription factor that is involved in responses to abiotic stress including cold acclimation,osmotic and salt stress.Mutants are sensitive to salt, freezing and osmotic stress.  go_component nucleus|GO:0005634|15994234|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|11597504|ISS  go_process response to osmotic stress|GO:0006970|15994234|IMP  go_process cold acclimation|GO:0009631|15994234|IMP  go_process response to salt stress|GO:0009651|15994234|IMP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription regulator activity|GO:0030528|15994234|ISS  product HOS10 (HIGH RESPONSE TO OSMOTIC STRESS 10); DNA binding / transcription regulator  note HIGH RESPONSE TO OSMOTIC STRESS 10 (HOS10); FUNCTIONS IN: transcription regulator activity, DNA binding; INVOLVED IN: cold acclimation, response to salt stress, regulation of transcription, DNA-dependent, response to osmotic stress, response to salicylic acid stimulus; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: ATMYB6; DNA binding / transcription factor (TAIR:AT4G09460.1); Has 6293 Blast hits to 5872 proteins in 350 species: Archae - 0; Bacteria - 0; Metazoa - 579; Fungi - 264; Plants - 3891; Viruses - 3; Other Eukaryotes - 1556 (source: NCBI BLink).  protein_id AT1G35515.1p  transcript_id AT1G35515.1  protein_id AT1G35515.1p  transcript_id AT1G35515.1  
At1g35516	chr1:013078774	0.0	W/13078774-13078929,13079305-13079355	AT1G35516.1  CDS  gene_syn F15O4.43  product unknown protein  note CONTAINS InterPro DOMAIN/s: Myb transcription factor (InterPro:IPR015495); Has 12 Blast hits to 12 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G35516.1p  transcript_id AT1G35516.1  protein_id AT1G35516.1p  transcript_id AT1G35516.1  
At1g35520	chr1:013085782	0.0	C/13085782-13085830,13085585-13085703,13085341-13085436,13085171-13085242,13084947-13085090,13084784-13084868,13084602-13084692,13084362-13084526,13084142-13084255,13083980-13084052,13083749-13083887,13083232-13083644,13082957-13083144,13082819-13082867	AT1G35520.1  CDS  gene_syn ARF15, AUXIN RESPONSE FACTOR 15, F15O4.42  gene ARF15  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ARF15 (AUXIN RESPONSE FACTOR 15); transcription factor  note AUXIN RESPONSE FACTOR 15 (ARF15); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: ARF21 (AUXIN RESPONSE FACTOR 21); transcription factor (TAIR:AT1G34410.1); Has 1305 Blast hits to 1107 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1305; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G35520.1p  transcript_id AT1G35520.1  protein_id AT1G35520.1p  transcript_id AT1G35520.1  
At1g35530	chr1:013089994	0.0	W/13089994-13090035,13090110-13090402,13090484-13090623,13090711-13090793,13090879-13090993,13091098-13091189,13091316-13091370,13091444-13091565,13091649-13091762,13091849-13092042,13092153-13092283,13092379-13092439,13092526-13092596,13092681-13092730,13092820-13092981,13093328-13093663,13093752-13093818,13094205-13094765,13095264-13095707,13096097-13096154,13096295-13097078	AT1G35530.1  CDS  gene_syn F15O4.40  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD/DEAH box helicase, putative  note DEAD/DEAH box helicase, putative; FUNCTIONS IN: in 6 functions; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G36020.1); Has 13052 Blast hits to 12913 proteins in 1640 species: Archae - 394; Bacteria - 6207; Metazoa - 2186; Fungi - 1278; Plants - 734; Viruses - 17; Other Eukaryotes - 2236 (source: NCBI BLink).  protein_id AT1G35530.1p  transcript_id AT1G35530.1  protein_id AT1G35530.1p  transcript_id AT1G35530.1  
At1g35535	chr1:013098266	0.0	W/13098266-13102245	AT1G35535.1  mRNA_TE_gene  pseudo  gene_syn F15O4.39  note Transposable element gene, copia-like retrotransposon family, has a 3.6e-252 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At1g35537	chr1:013105507	0.0	C/13105507-13105570,13105206-13105387	AT1G35537.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||IEA  product unknown protein  note INVOLVED IN: defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Knottin (InterPro:IPR003614); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G35537.1p  transcript_id AT1G35537.1  protein_id AT1G35537.1p  transcript_id AT1G35537.1  
At1g35540	chr1:013108634	0.0	W/13108634-13108682,13108755-13108873,13109070-13109165,13109264-13109320,13109416-13109559,13109638-13109722,13109813-13109903,13109979-13110143,13110251-13110364,13110453-13110525,13110618-13110756,13110841-13111250,13111338-13111525,13111613-13111700	AT1G35540.1  CDS  gene_syn ARF14, AUXIN RESPONSE FACTOR 14, F15O4.64, F15O4_64  gene ARF14  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ARF14 (AUXIN RESPONSE FACTOR 14); transcription factor  note AUXIN RESPONSE FACTOR 14 (ARF14); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: ARF22 (AUXIN RESPONSE FACTOR 22); transcription factor (TAIR:AT1G34390.1); Has 1231 Blast hits to 1038 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1229; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G35540.1p  transcript_id AT1G35540.1  protein_id AT1G35540.1p  transcript_id AT1G35540.1  
At1g35545	chr1:013110517	0.0	C/13110517-13112832	AT1G35545.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G35550 and AT1G35540  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G35545.1  
At1g35550	chr1:013112722	0.0	W/13112722-13113036	AT1G35550.1  CDS  gene_syn F15O4.37  go_function GTP binding|GO:0005525||IEA  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414||ISS  go_function translation elongation factor activity|GO:0003746||ISS  product elongation factor Tu C-terminal domain-containing protein  note elongation factor Tu C-terminal domain-containing protein; FUNCTIONS IN: GTP binding, translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001); BEST Arabidopsis thaliana protein match is: elongation factor 1-alpha / EF-1-alpha (TAIR:AT5G60390.3); Has 10581 Blast hits to 10580 proteins in 6398 species: Archae - 194; Bacteria - 0; Metazoa - 6916; Fungi - 2081; Plants - 372; Viruses - 0; Other Eukaryotes - 1018 (source: NCBI BLink).  protein_id AT1G35550.1p  transcript_id AT1G35550.1  protein_id AT1G35550.1p  transcript_id AT1G35550.1  
At1g35560	chr1:013116099	0.0	C/13116099-13117124	AT1G35560.1  CDS  gene_syn F15O4.35  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product TCP family transcription factor, putative  note TCP family transcription factor, putative; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor, putative (TAIR:AT1G72010.1); Has 216 Blast hits to 215 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 2; Plants - 179; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G35560.1p  transcript_id AT1G35560.1  protein_id AT1G35560.1p  transcript_id AT1G35560.1  
At1g35570	chr1:013119619	0.0	C/13119619-13120439	AT1G35570.1  mRNA_TE_gene  pseudo  gene_syn F15O4.34  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G11710.1); similar to hypothetical protein 23.t00046 [Brassica oleracea] (GB:ABD65629.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446)  
At1g35580	chr1:013124443	0.0	C/13124443-13124808,13123939-13124370,13123657-13123847,13123183-13123576	AT1G35580.3  CDS  gene_syn CINV1, F15O4.33, cytosolic invertase 1  gene CINV1  function Encodes a protein with cytosolic (alkaline/neutral) invertase activity. The protein was shown to interact with PIP5K9.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component nucleus|GO:0005634|17220200|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|17220200|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component membrane|GO:0016020|17220200|IDA  go_process carbohydrate metabolic process|GO:0005975|17220200|IMP  go_process amino acid metabolic process|GO:0006520|17220200|IMP  go_function beta-fructofuranosidase activity|GO:0004564|17220200|IDA  go_function beta-fructofuranosidase activity|GO:0004564||ISS  product CINV1 (cytosolic invertase 1); beta-fructofuranosidase  note cytosolic invertase 1 (CINV1); FUNCTIONS IN: beta-fructofuranosidase activity; INVOLVED IN: amino acid metabolic process, carbohydrate metabolic process; LOCATED IN: cytosol, nucleus, plasma membrane, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plant neutral invertase (InterPro:IPR006937), Six-hairpin glycosidase-like (InterPro:IPR008928); BEST Arabidopsis thaliana protein match is: beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative (TAIR:AT4G09510.2); Has 480 Blast hits to 480 proteins in 69 species: Archae - 0; Bacteria - 88; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 225 (source: NCBI BLink).  protein_id AT1G35580.3p  transcript_id AT1G35580.3  protein_id AT1G35580.3p  transcript_id AT1G35580.3  
At1g35580	chr1:013124443	0.0	C/13124443-13124808,13123939-13124370,13123657-13123847,13123209-13123576,13122460-13122758	AT1G35580.1  CDS  gene_syn CINV1, F15O4.33, cytosolic invertase 1  gene CINV1  function Encodes a protein with cytosolic (alkaline/neutral) invertase activity. The protein was shown to interact with PIP5K9.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component nucleus|GO:0005634|17220200|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|17220200|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component membrane|GO:0016020|17220200|IDA  go_process carbohydrate metabolic process|GO:0005975|17220200|IMP  go_process amino acid metabolic process|GO:0006520|17220200|IMP  go_function beta-fructofuranosidase activity|GO:0004564|17220200|IDA  go_function beta-fructofuranosidase activity|GO:0004564||ISS  product CINV1 (cytosolic invertase 1); beta-fructofuranosidase  note cytosolic invertase 1 (CINV1); FUNCTIONS IN: beta-fructofuranosidase activity; INVOLVED IN: amino acid metabolic process, carbohydrate metabolic process; LOCATED IN: cytosol, nucleus, plasma membrane, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plant neutral invertase (InterPro:IPR006937), Six-hairpin glycosidase-like (InterPro:IPR008928); BEST Arabidopsis thaliana protein match is: beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative (TAIR:AT4G09510.1); Has 518 Blast hits to 517 proteins in 75 species: Archae - 0; Bacteria - 100; Metazoa - 0; Fungi - 0; Plants - 174; Viruses - 0; Other Eukaryotes - 244 (source: NCBI BLink).  protein_id AT1G35580.1p  transcript_id AT1G35580.1  protein_id AT1G35580.1p  transcript_id AT1G35580.1  
At1g35580	chr1:013124443	0.0	C/13124443-13124808,13123939-13124370,13123657-13123847,13123209-13123576,13122460-13122758	AT1G35580.2  CDS  gene_syn CINV1, F15O4.33, cytosolic invertase 1  gene CINV1  function Encodes a protein with cytosolic (alkaline/neutral) invertase activity. The protein was shown to interact with PIP5K9.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component nucleus|GO:0005634|17220200|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|17220200|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component membrane|GO:0016020|17220200|IDA  go_process carbohydrate metabolic process|GO:0005975|17220200|IMP  go_process amino acid metabolic process|GO:0006520|17220200|IMP  go_function beta-fructofuranosidase activity|GO:0004564|17220200|IDA  go_function beta-fructofuranosidase activity|GO:0004564||ISS  product CINV1 (cytosolic invertase 1); beta-fructofuranosidase  note cytosolic invertase 1 (CINV1); FUNCTIONS IN: beta-fructofuranosidase activity; INVOLVED IN: amino acid metabolic process, carbohydrate metabolic process; LOCATED IN: cytosol, nucleus, plasma membrane, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plant neutral invertase (InterPro:IPR006937), Six-hairpin glycosidase-like (InterPro:IPR008928); BEST Arabidopsis thaliana protein match is: beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative (TAIR:AT4G09510.1); Has 518 Blast hits to 517 proteins in 75 species: Archae - 0; Bacteria - 100; Metazoa - 0; Fungi - 0; Plants - 174; Viruses - 0; Other Eukaryotes - 244 (source: NCBI BLink).  protein_id AT1G35580.2p  transcript_id AT1G35580.2  protein_id AT1G35580.2p  transcript_id AT1G35580.2  
At1g35590	chr1:013131935	0.0	W/13131935-13135837	AT1G35590.1  mRNA_TE_gene  pseudo  gene_syn F15O4.30  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 1.2e-150 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At1g35600	chr1:013136559	0.0	W/13136559-13139252	AT1G35600.1  mRNA_TE_gene  pseudo  gene_syn F15O4.28  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 6.1e-41 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At1g35610	chr1:013143150	0.0	C/13143150-13144988	AT1G35610.1  CDS  gene_syn F15O4.27  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT3G13760.1); Has 1124 Blast hits to 475 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 1101; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G35610.1p  transcript_id AT1G35610.1  protein_id AT1G35610.1p  transcript_id AT1G35610.1  
At1g35612	chr1:013145643	0.0	W/13145643-13146693	AT1G35612.1  mRNA_TE_gene  pseudo  gene_syn F15O4.26  function pseudogene of Ulp1 protease family protein  note Transposable element gene, expressed protein  
At1g35614	chr1:013148592	0.0	W/13148592-13148736,13149244-13149362,13149482-13149559	AT1G35614.1  CDS  gene_syn F15O4.23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G35500.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G35614.1p  transcript_id AT1G35614.1  protein_id AT1G35614.1p  transcript_id AT1G35614.1  
At1g35617	chr1:013153583	0.0	W/13153583-13153948	AT1G35617.1  CDS  gene_syn F15O4.21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem; Has 240 Blast hits to 189 proteins in 50 species: Archae - 0; Bacteria - 26; Metazoa - 71; Fungi - 11; Plants - 69; Viruses - 20; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT1G35617.1p  transcript_id AT1G35617.1  protein_id AT1G35617.1p  transcript_id AT1G35617.1  
At1g35620	chr1:013156504	0.0	W/13156504-13156713,13156918-13157021,13157128-13157498,13157575-13157882,13157951-13158280	AT1G35620.1  CDS  gene_syn ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, ATPDI8, ATPDIL5-2, F15O4.20, PDI-LIKE 5-2, PDI8, PROTEIN DISULFIDE ISOMERASE 8  gene ATPDIL5-2  function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). However, the level of transcripts for this gene is slightly elevated in atbzip60 mutants.  go_component plasma membrane|GO:0005886|17151019|IDA  go_process cell redox homeostasis|GO:0045454||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_function protein disulfide isomerase activity|GO:0003756|18574595|ISS  product ATPDIL5-2 (PDI-LIKE 5-2); protein disulfide isomerase  note PDI-LIKE 5-2 (ATPDIL5-2); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: endoplasmic reticulum, plasma membrane, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336), Thioredoxin, conserved site (InterPro:IPR017937); BEST Arabidopsis thaliana protein match is: ATPDIL1-1 (PDI-LIKE 1-1); protein disulfide isomerase (TAIR:AT1G21750.2); Has 11799 Blast hits to 10169 proteins in 1610 species: Archae - 95; Bacteria - 4442; Metazoa - 2892; Fungi - 774; Plants - 849; Viruses - 2; Other Eukaryotes - 2745 (source: NCBI BLink).  protein_id AT1G35620.1p  transcript_id AT1G35620.1  protein_id AT1G35620.1p  transcript_id AT1G35620.1  
At1g35625	chr1:013159260	0.0	C/13159260-13159260,13158762-13159169,13158466-13158662	AT1G35625.1  CDS  gene_syn F15O4.19  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  go_function peptidase activity|GO:0008233||ISS  go_function zinc ion binding|GO:0008270||ISS  product peptidase/ protein binding / zinc ion binding  note peptidase/ protein binding / zinc ion binding; FUNCTIONS IN: peptidase activity, protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protease-associated zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G35630.1); Has 5295 Blast hits to 5278 proteins in 202 species: Archae - 0; Bacteria - 43; Metazoa - 1799; Fungi - 394; Plants - 2413; Viruses - 2; Other Eukaryotes - 644 (source: NCBI BLink).  protein_id AT1G35625.1p  transcript_id AT1G35625.1  protein_id AT1G35625.1p  transcript_id AT1G35625.1  
At1g35630	chr1:013164364	0.0	C/13164364-13164484,13163831-13164061,13163342-13163749,13163041-13163237	AT1G35630.1  CDS  gene_syn F15O4.63, F15O4_63  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function peptidase activity|GO:0008233||ISS  go_function zinc ion binding|GO:0008270||ISS  product protease-associated zinc finger (C3HC4-type RING finger) family protein  note protease-associated zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: peptidase activity, protein binding, zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: peptidase/ protein binding / zinc ion binding (TAIR:AT1G35625.1); Has 5397 Blast hits to 5376 proteins in 197 species: Archae - 0; Bacteria - 14; Metazoa - 1905; Fungi - 389; Plants - 2439; Viruses - 0; Other Eukaryotes - 650 (source: NCBI BLink).  protein_id AT1G35630.1p  transcript_id AT1G35630.1  protein_id AT1G35630.1p  transcript_id AT1G35630.1  
At1g35640	chr1:013174552	0.0	W/13174552-13175390	AT1G35640.1  mRNA_TE_gene  pseudo  gene_syn F15O4.15  note Transposable element gene  
At1g35645	chr1:013175798	0.0	W/13175798-13177747	AT1G35645.1  mRNA_TE_gene  pseudo  gene_syn F15O4.62  note Transposable element gene, Mutator-like transposase family, has a 6.9e-78 P-value blast match to Q9SLM0 /314-478 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g35647	chr1:013181478	0.0	C/13181478-13186236	AT1G35647.1  mRNA_TE_gene  pseudo  gene_syn F15O4.14, F15O4_14  note Transposable element gene, gypsy-like retrotransposon family, has a 3.6e-209 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At1g35650	chr1:013187285	0.0	C/13187285-13191749	AT1G35650.1  mRNA_TE_gene  pseudo  gene_syn F15O4.12  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G29240.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At1g35660	chr1:013192743	0.0	W/13192743-13192954,13193054-13193178,13193257-13193464,13193543-13194065,13194144-13194395,13194495-13194683,13194767-13194841,13194933-13197272,13197362-13197655	AT1G35660.1  CDS  gene_syn F15O4.11  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; Has 306 Blast hits to 231 proteins in 73 species: Archae - 0; Bacteria - 7; Metazoa - 211; Fungi - 14; Plants - 31; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT1G35660.1p  transcript_id AT1G35660.1  protein_id AT1G35660.1p  transcript_id AT1G35660.1  
At1g35663	chr1:013199232	0.0	C/13199232-13199771	AT1G35663.1  mRNA_TE_gene  pseudo  gene_syn F15O4.65, F15O4_65  note Transposable element gene, similar to DNA binding / transposase [Arabidopsis thaliana] (TAIR:AT4G04635.1)  
At1g35670	chr1:013205456	0.0	W/13205456-13205996,13206686-13206829,13206919-13207071,13207170-13207285,13207357-13207524,13207608-13207832,13207918-13208058	AT1G35670.1  CDS  gene_syn ATCDPK2, ATCPK11, CALCIUM-DEPENDENT PROTEIN KINASE 2, CPK11, F15O4.8  gene ATCDPK2  function Encodes a Ca(2+)-dependent, calmodulin-independent protein kinase that is rapidly induced by drought and high-salt stress but not by low-temperature stress or heat stress. Positive regulator of ABA signaling. Phosphorylates ABA responsive transcription factors ABF1 and ABF4.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468|8078458|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process response to water deprivation|GO:0009414|8078458|IEP  go_process response to salt stress|GO:0009651|8078458|IEP  go_process positive regulation of abscisic acid mediated signaling|GO:0009789|17921317|IMP  go_function calmodulin-dependent protein kinase activity|GO:0004683|8078458|IDA  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  go_function kinase activity|GO:0016301||ISS  product ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2); calmodulin-dependent protein kinase/ kinase  note CALCIUM-DEPENDENT PROTEIN KINASE 2 (ATCDPK2); FUNCTIONS IN: calmodulin-dependent protein kinase activity, kinase activity; INVOLVED IN: response to salt stress, response to water deprivation, positive regulation of abscisic acid mediated signaling, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), Tyrosine protein kinase (InterPro:IPR001245), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CPK4; calmodulin-dependent protein kinase/ kinase/ protein kinase (TAIR:AT4G09570.1); Has 99688 Blast hits to 92665 proteins in 2925 species: Archae - 73; Bacteria - 8036; Metazoa - 42731; Fungi - 12606; Plants - 16004; Viruses - 559; Other Eukaryotes - 19679 (source: NCBI BLink).  protein_id AT1G35670.1p  transcript_id AT1G35670.1  protein_id AT1G35670.1p  transcript_id AT1G35670.1  
At1g35680	chr1:013208777	0.0	W/13208777-13209091,13209402-13209482,13209716-13209817,13209926-13210000,13210157-13210246	AT1G35680.1  CDS  gene_syn F15O4.7  go_component nucleus|GO:0005634|14617066|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function RNA binding|GO:0003723||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_process response to cold|GO:0009409|14617066|IEP  go_function structural constituent of ribosome|GO:0003735||ISS  product 50S ribosomal protein L21, chloroplast / CL21 (RPL21)  note 50S ribosomal protein L21, chloroplast / CL21 (RPL21); FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: response to cold, translation; LOCATED IN: ribosome, chloroplast stroma, nucleus, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L21, conserved site (InterPro:IPR018258), Ribosomal protein L21 (InterPro:IPR001787); BEST Arabidopsis thaliana protein match is: NFD1 (NUCLEAR FUSION DEFECTIVE 1); RNA binding / structural constituent of ribosome (TAIR:AT4G30930.1); Has 4670 Blast hits to 4670 proteins in 1425 species: Archae - 0; Bacteria - 2792; Metazoa - 89; Fungi - 4; Plants - 92; Viruses - 0; Other Eukaryotes - 1693 (source: NCBI BLink).  protein_id AT1G35680.1p  transcript_id AT1G35680.1  protein_id AT1G35680.1p  transcript_id AT1G35680.1  
At1g35690	chr1:013214130	0.0	W/13214130-13215116	AT1G35690.1  mRNA_TE_gene  pseudo  gene_syn F15O4.5  note Transposable element gene, pseudogene, similar to OSJNBb0041J06.18, blastp match of 27% identity and 1.6e-07 P-value to GP|27818010|dbj|BAC55773.1||AP005176 OSJNBb0041J06.18 {Oryza sativa (japonica cultivar-group)}  
At1g35700	chr1:013216616	0.0	W/13216616-13217251	AT1G35700.1  pseudogenic_transcript  pseudo  gene_syn F15O4.3  note pseudogene, putative ubiquitin-conjugating enzyme, similar to ubiquitin-conjugating enzyme GB:CAB40394 GI:4583656 from (Guillardia theta); blastp match of 61% identity and 1.6e-34 P-value to GP|12580660|emb|CAC26977.1||AJ010592 ubiquitin conjugating enzyme {Guillardia theta}  
At1g35710	chr1:013220940	0.0	W/13220940-13224015,13224100-13224386	AT1G35710.1  CDS  gene_syn F14D7.1, F14D7_1  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase, active site (InterPro:IPR008266), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: kinase (TAIR:AT4G08850.1); Has 211145 Blast hits to 106341 proteins in 3293 species: Archae - 110; Bacteria - 16639; Metazoa - 93396; Fungi - 8368; Plants - 67089; Viruses - 399; Other Eukaryotes - 25144 (source: NCBI BLink).  protein_id AT1G35710.1p  transcript_id AT1G35710.1  protein_id AT1G35710.1p  transcript_id AT1G35710.1  
At1g35720	chr1:013225304	0.0	W/13225304-13225379,13225976-13226121,13226208-13226939	AT1G35720.1  CDS  gene_syn ANNAT1, ANNEXIN, ANNEXIN A1, ANNEXIN ARABIDOPSIS 1, ATOXY5, F14D7.2, F14D7_2, OXY5  gene ANNAT1  function Encodes a member of the annexin gene family, a diverse, multigene family of calcium-dependent, membrane-binding proteins. The protein was determined to have peroxidase activity. This activity is thought to be dependent on the presence of post-translational modifications (most likely phosphorylation). The protein was shown to be present as a mixture of monomer and homodimer. The homodimerization seems to be dependent on the presence of Ca2+ or H2O2. The dimerization was prevented by the addition of DTT, & 946;-mercaptoethanol and TCEP. Annat1 mRNA is expressed in flowers, roots,leaves and stems and is most abundant in stems. mRNA levels are increased in response to oxidative stress. Developmental expression patterns suggest a role in Golgi-mediated polysaccharide secretion.  go_component cell wall|GO:0005618|16287169|IDA  go_component mitochondrion|GO:0005739|17137349|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function copper ion binding|GO:0005507|16526091|IDA  go_function ATP binding|GO:0005524|17137349|IDA  go_component cytosol|GO:0005829|15161963|IDA  go_component membrane|GO:0016020|15161963|IDA  go_process response to osmotic stress|GO:0006970|15161963|IEP  go_process response to osmotic stress|GO:0006970|15161963|IMP  go_process response to oxidative stress|GO:0006979|9551087|IGI  go_process response to abscisic acid stimulus|GO:0009737|15161963|IEP  go_process response to abscisic acid stimulus|GO:0009737|15161963|IMP  go_function peroxidase activity|GO:0004601|16153598|IDA  go_function calcium ion binding|GO:0005509|11457958|ISS  go_function calcium ion binding|GO:0005509||ISS  go_function calcium-dependent phospholipid binding|GO:0005544||ISS  go_function protein homodimerization activity|GO:0042803|16153598|IDA  product ANNAT1 (ANNEXIN ARABIDOPSIS 1); ATP binding / calcium ion binding / calcium-dependent phospholipid binding / copper ion binding / peroxidase/ protein homodimerization  note ANNEXIN ARABIDOPSIS 1 (ANNAT1); FUNCTIONS IN: in 6 functions; INVOLVED IN: response to oxidative stress, response to cadmium ion, response to abscisic acid stimulus, response to osmotic stress; LOCATED IN: in 10 components; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Annexin like protein (InterPro:IPR015472), Annexin repeat (InterPro:IPR018502), Annexin repeat, conserved site (InterPro:IPR018252), Annexin (InterPro:IPR001464), Annexin, type plant (InterPro:IPR009118); BEST Arabidopsis thaliana protein match is: ANNAT2 (Annexin Arabidopsis 2); calcium ion binding / calcium-dependent phospholipid binding (TAIR:AT5G65020.1); Has 3191 Blast hits to 1807 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 2573; Fungi - 111; Plants - 309; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink).  protein_id AT1G35720.1p  transcript_id AT1G35720.1  protein_id AT1G35720.1p  transcript_id AT1G35720.1  
At1g35730	chr1:013228784	0.0	C/13228784-13229796,13228144-13228306,13227830-13227993,13227502-13227751,13227324-13227428	AT1G35730.1  CDS  gene_syn APUM9, Arabidopsis Pumilio 9, F14D7.3, F14D7_3  gene APUM9  go_function RNA binding|GO:0003723||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_function RNA binding|GO:0003723||ISS  product APUM9 (Arabidopsis Pumilio 9); RNA binding / binding  note Arabidopsis Pumilio 9 (APUM9); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding region (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: APUM10 (Arabidopsis Pumilio 10); RNA binding / binding (TAIR:AT1G35750.1); Has 1979 Blast hits to 1187 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 517; Fungi - 557; Plants - 334; Viruses - 0; Other Eukaryotes - 571 (source: NCBI BLink).  protein_id AT1G35730.1p  transcript_id AT1G35730.1  protein_id AT1G35730.1p  transcript_id AT1G35730.1  
At1g35735	chr1:013231091	0.0	C/13231091-13235530	AT1G35735.1  mRNA_TE_gene  pseudo  gene_syn F14D7.9  note Transposable element gene, copia-like retrotransposon family, has a 7.7e-113 P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element)  
At1g35740	chr1:013242545	0.0	W/13242545-13244065	AT1G35740.1  pseudogenic_transcript  pseudo  gene_syn F14D7.11, F14D7_11  note pseudogene, similar to putative beta-1,3-glucan synthase, blastp match of 57% identity and 2.1e-14 P-value to GP|23503034|gb|AAK49452.2|AF304372_1|AF304372 putative beta-1,3-glucan synthase {Nicotiana alata}  
At1g35745	chr1:013248054	0.0	C/13248054-13249824	AT1G35745.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 2.5e-62 P-value blast match to GB:CAA38906 Tam3-transposase (hAT-element) (Antirrhinum majus)  
At1g35750	chr1:013254666	0.0	C/13254666-13255570,13254260-13254422,13253919-13254082,13253588-13253837,13253398-13253502	AT1G35750.1  CDS  gene_syn APUM10, Arabidopsis Pumilio 10, F14D7.5, F14D7_5  gene APUM10  go_function RNA binding|GO:0003723||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product APUM10 (Arabidopsis Pumilio 10); RNA binding / binding  note Arabidopsis Pumilio 10 (APUM10); FUNCTIONS IN: RNA binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding region (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: APUM9 (Arabidopsis Pumilio 9); RNA binding / binding (TAIR:AT1G35730.1); Has 1762 Blast hits to 1143 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 498; Fungi - 555; Plants - 261; Viruses - 0; Other Eukaryotes - 448 (source: NCBI BLink).  protein_id AT1G35750.1p  transcript_id AT1G35750.1  protein_id AT1G35750.1p  transcript_id AT1G35750.1  
At1g35760	chr1:013264307	0.0	W/13264307-13268116	AT1G35760.1  mRNA_TE_gene  pseudo  gene_syn F14D7.6, F14D7_6  note Transposable element gene, Mutator-like transposase family, has a 8.7e-50 P-value blast match to Q9SHN7 /450-633 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g35770	chr1:013269566	0.0	C/13269566-13275678	AT1G35770.1  mRNA_TE_gene  pseudo  gene_syn F14D7.7, F14D7_7  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G06860.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G08340.1); similar to cysteine-type peptidase [Arabidopsis thaliana] (TAIR:AT3G42820.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At1g35780	chr1:013279988	0.0	C/13279988-13280113,13279493-13279566,13278467-13278596,13278099-13278383,13277778-13278023	AT1G35780.1  CDS  gene_syn F14D7.8, F14D7_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78150.2); Has 75 Blast hits to 74 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G35780.1p  transcript_id AT1G35780.1  protein_id AT1G35780.1p  transcript_id AT1G35780.1  
At1g35790	chr1:013295190	0.0	C/13295190-13300109	AT1G35790.1  mRNA_TE_gene  pseudo  gene_syn F14D7.10, F14D7_10  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.3e-42 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g35820	chr1:013309207	0.0	C/13309207-13309257,13309023-13309109,13308455-13308941,13308119-13308357	AT1G35820.1  CDS  gene_syn F10O5.1, F10O5_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G30520.1); Has 11 Blast hits to 11 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G35820.1p  transcript_id AT1G35820.1  protein_id AT1G35820.1p  transcript_id AT1G35820.1  
At1g35830	chr1:013321214	0.0	C/13321214-13322122	AT1G35830.1  CDS  gene_syn F10O5.2, F10O5_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product VQ motif-containing protein  note VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT5G65170.1); Has 1016 Blast hits to 914 proteins in 124 species: Archae - 0; Bacteria - 22; Metazoa - 356; Fungi - 161; Plants - 221; Viruses - 46; Other Eukaryotes - 210 (source: NCBI BLink).  protein_id AT1G35830.1p  transcript_id AT1G35830.1  protein_id AT1G35830.1p  transcript_id AT1G35830.1  
At1g35840	chr1:013324970	0.0	W/13324970-13329493	AT1G35840.1  mRNA_TE_gene  pseudo  gene_syn F10O5.13  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)  
At1g35850	chr1:013330510	0.0	W/13330510-13330728,13330811-13331506	AT1G35850.1  CDS  gene_syn APUM17, Arabidopsis Pumilio 17, F10O5.3, F10O5_3  gene APUM17  go_component endomembrane system|GO:0012505||IEA  go_function RNA binding|GO:0003723||IEA  go_function binding|GO:0005488||IEA  go_function RNA binding|GO:0003723||ISS  product APUM17 (Arabidopsis Pumilio 17); RNA binding / binding  note Arabidopsis Pumilio 17 (APUM17); FUNCTIONS IN: RNA binding, binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding region (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: APUM16 (Arabidopsis Pumilio 16); RNA binding / binding (TAIR:AT5G59280.1); Has 1629 Blast hits to 880 proteins in 165 species: Archae - 0; Bacteria - 0; Metazoa - 529; Fungi - 332; Plants - 353; Viruses - 0; Other Eukaryotes - 415 (source: NCBI BLink).  protein_id AT1G35850.1p  transcript_id AT1G35850.1  protein_id AT1G35850.1p  transcript_id AT1G35850.1  
At1g35860	chr1:013333987	0.0	C/13333987-13334050,13333739-13333963,13333360-13333571,13333147-13333254,13332887-13333058,13332518-13332670,13332286-13332384,13332047-13332213	AT1G35860.1  CDS  gene_syn F10O5.4, F10O5_4, TOC75-I, translocon outer membrane complex 75-I  gene TOC75-I  function TOC75 pseudogene due to a 5.4-kb gypsy/Ty3-related retrotransposon inserted at the 5  end of the gene  go_component outer membrane|GO:0019867||IEA  product TOC75-I (translocon outer membrane complex 75-I)  note translocon outer membrane complex 75-I (TOC75-I); LOCATED IN: outer membrane; CONTAINS InterPro DOMAIN/s: Bacterial surface antigen (D15) (InterPro:IPR000184); BEST Arabidopsis thaliana protein match is: TOC75-III (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 75-III); P-P-bond-hydrolysis-driven protein transmembrane transporter (TAIR:AT3G46740.1); Has 373 Blast hits to 316 proteins in 68 species: Archae - 0; Bacteria - 170; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).  protein_id AT1G35860.1p  transcript_id AT1G35860.1  protein_id AT1G35860.1p  transcript_id AT1G35860.1  
At1g35870	chr1:013335257	0.0	W/13335257-13339587	AT1G35870.1  mRNA_TE_gene  pseudo  gene_syn F10O5.14  note Transposable element gene, gypsy-like retrotransposon family, has a 1.4e-152 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At1g35880	chr1:013341158	0.0	C/13341158-13341228,13339851-13340448	AT1G35880.1  CDS  gene_syn F10O5.5, F10O5_5  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: TOC75-III (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 75-III); P-P-bond-hydrolysis-driven protein transmembrane transporter (TAIR:AT3G46740.1); Has 233 Blast hits to 216 proteins in 61 species: Archae - 2; Bacteria - 45; Metazoa - 90; Fungi - 9; Plants - 56; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT1G35880.1p  transcript_id AT1G35880.1  protein_id AT1G35880.1p  transcript_id AT1G35880.1  
At1g35890	chr1:013341300	0.0	W/13341300-13341488,13341627-13341953	AT1G35890.1  CDS  gene_syn F10O5.6, F10O5_6  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); Has 12 Blast hits to 12 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G35890.1p  transcript_id AT1G35890.1  protein_id AT1G35890.1p  transcript_id AT1G35890.1  
At1g35900	chr1:013348344	0.0	C/13348344-13348433,13348136-13348231,13347504-13347617	AT1G35900.1  CDS  gene_syn F10O5.7, F10O5_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G35900.1p  transcript_id AT1G35900.1  protein_id AT1G35900.1p  transcript_id AT1G35900.1  
At1g35910	chr1:013364552	0.0	C/13364552-13364965,13364405-13364476,13364210-13364302,13364069-13364125,13363853-13363954,13363552-13363770,13363358-13363450,13363200-13363259	AT1G35910.1  CDS  gene_syn F10O5.8, F10O5_8  go_process trehalose biosynthetic process|GO:0005992||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_process trehalose biosynthetic process|GO:0005992||ISS  go_function trehalose-phosphatase activity|GO:0004805||ISS  product trehalose-6-phosphate phosphatase, putative  note trehalose-6-phosphate phosphatase, putative; FUNCTIONS IN: catalytic activity, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process, metabolic process; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: trehalose-6-phosphate phosphatase, putative (TAIR:AT5G65140.1); Has 1442 Blast hits to 1438 proteins in 521 species: Archae - 29; Bacteria - 761; Metazoa - 195; Fungi - 97; Plants - 249; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).  protein_id AT1G35910.1p  transcript_id AT1G35910.1  protein_id AT1G35910.1p  transcript_id AT1G35910.1  
At1g35920	chr1:013372521	0.0	W/13372521-13375053	AT1G35920.1  mRNA_TE_gene  pseudo  gene_syn F10O5.9, F10O5_9  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14450.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13270.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G34960.1); similar to hypothetical protein 31.t00031 [Brassica oleracea] (GB:ABD65118.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At1g35930	chr1:013375848	0.0	W/13375848-13377170	AT1G35930.1  mRNA_TE_gene  pseudo  gene_syn F10O5.10, F10O5_10  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14455.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At1g35940	chr1:013377800	0.0	W/13377800-13383951	AT1G35940.1  mRNA_TE_gene  pseudo  gene_syn F10O5.11, F10O5_11  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13250.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30560.1); similar to AT hook motif-containing protein-related [Arabidopsis thaliana] (TAIR:AT3G42100.1); similar to hypothetical protein 27.t00039 [Brassica oleracea] (GB:ABD65060.1); similar to hypothetical protein 31.t00030 [Brassica oleracea] (GB:ABD65117.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE80108.1); contains InterPro domain Protein of unknown function DUF889, eukaryote; (InterPro:IPR010285); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637)  
At1g35950	chr1:013384661	0.0	W/13384661-13385740	AT1G35950.1  mRNA_TE_gene  pseudo  gene_syn T22A15.14, T22A15_14  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05084.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At1g35960	chr1:013390829	0.0	C/13390829-13396127	AT1G35960.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 6.3e-34 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)  
At1g35970	chr1:013397664	0.0	W/13397664-13403558	AT1G35970.1  mRNA_TE_gene  pseudo  gene_syn T22A15.12, T22A15_12  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.8e-37 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g35980	chr1:013406230	0.0	C/13406230-13407328	AT1G35980.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein, probably a fragment of the entire gene  
At1g35990	chr1:013409752	0.0	C/13409752-13415069	AT1G35990.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.2e-23 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)  
At1g35995	chr1:013418827	0.0	C/13418827-13421119	AT1G35995.1  mRNA_TE_gene  pseudo  gene_syn T22A15.9, T22A15_9  note Transposable element gene, Mutator-like transposase family, has a 4.4e-38 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At1g36000	chr1:013422567	0.0	W/13422567-13422667,13422756-13423023	AT1G36000.1  CDS  gene_syn LBD5, LOB DOMAIN-CONTAINING PROTEIN 5, T22A15.8, T22A15_8  gene LBD5  go_process biological_process|GO:0008150||ND  product LBD5 (LOB DOMAIN-CONTAINING PROTEIN 5)  note LOB DOMAIN-CONTAINING PROTEIN 5 (LBD5); INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD8 (LOB DOMAIN-CONTAINING PROTEIN 8) (TAIR:AT2G19510.1); Has 444 Blast hits to 442 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 444; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G36000.1p  transcript_id AT1G36000.1  protein_id AT1G36000.1p  transcript_id AT1G36000.1  
At1g36010	chr1:013426455	0.0	W/13426455-13430084	AT1G36010.1  mRNA_TE_gene  pseudo  gene_syn T22A15.7  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.8e-40 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)  
At1g36020	chr1:013434269	0.0	C/13434269-13434340,13433919-13434197	AT1G36020.1  CDS  gene_syn T22A15.6, T22A15_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (TAIR:AT1G35530.1); Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G36020.1p  transcript_id AT1G36020.1  protein_id AT1G36020.1p  transcript_id AT1G36020.1  
At1g36030	chr1:013436586	0.0	W/13436586-13436828	AT1G36030.1  CDS  gene_syn T22A15.5, T22A15_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G30430.1); Has 10 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G36030.1p  transcript_id AT1G36030.1  protein_id AT1G36030.1p  transcript_id AT1G36030.1  
At1g36035	chr1:013440076	0.0	W/13440076-13445130	AT1G36035.1  mRNA_TE_gene  pseudo  gene_syn F5J5.1, F5J5_1  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to gb|AAO73523.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At1g36040	chr1:013446062	0.0	W/13446062-13447625	AT1G36040.1  mRNA_TE_gene  pseudo  gene_syn F5J5.2, F5J5_2  note Transposable element gene, copia-like retrotransposon family, has a 1.3e-34 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At1g36050	chr1:013450467	0.0	W/13450467-13450608,13450694-13450767,13450851-13450934,13451029-13451109,13451274-13451354,13451598-13451690,13451943-13452122,13452209-13452276,13452353-13452404,13452497-13452550,13452636-13452728,13452811-13452877,13452964-13453041,13453361-13453683	AT1G36050.1  CDS  gene_syn F5J5.4, F5J5_4  go_component plasma membrane|GO:0005886|17151019|IDA  go_process fatty acid biosynthetic process|GO:0006633||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1692 (InterPro:IPR012936); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22200.1); Has 910 Blast hits to 798 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 392; Fungi - 181; Plants - 141; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink).  protein_id AT1G36050.1p  transcript_id AT1G36050.1  protein_id AT1G36050.1p  transcript_id AT1G36050.1  
At1g36050	chr1:013450467	0.0	W/13450467-13450608,13450694-13450767,13450851-13450934,13451029-13451109,13451274-13451354,13451598-13451690,13451943-13452122,13452209-13452276,13452353-13452404,13452497-13452550,13452636-13452728,13452811-13452877,13452964-13453055	AT1G36050.2  CDS  gene_syn F5J5.4, F5J5_4  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1692 (InterPro:IPR012936); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22200.1).  protein_id AT1G36050.2p  transcript_id AT1G36050.2  protein_id AT1G36050.2p  transcript_id AT1G36050.2  
At1g36060	chr1:013454718	0.0	C/13454718-13455662	AT1G36060.1  CDS  gene_syn F5J5.5, F5J5_5  function encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634|9192694|IC  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677|9192694|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9192694|ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: RAP2.4 (related to AP2 4); DNA binding / transcription factor (TAIR:AT1G78080.1); Has 3946 Blast hits to 3765 proteins in 209 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 0; Plants - 3895; Viruses - 2; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT1G36060.1p  transcript_id AT1G36060.1  protein_id AT1G36060.1p  transcript_id AT1G36060.1  
At1g36070	chr1:013470339	0.0	C/13470339-13470386,13470096-13470269,13469914-13470003,13468565-13468699,13468368-13468478,13468177-13468268,13467964-13468069,13467778-13467864,13467164-13467577	AT1G36070.1  CDS  gene_syn F5J5.6, F5J5_6  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product WD-40 repeat family protein  note WD-40 repeat family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78070.1); Has 17887 Blast hits to 8999 proteins in 417 species: Archae - 52; Bacteria - 4808; Metazoa - 5895; Fungi - 3324; Plants - 1207; Viruses - 0; Other Eukaryotes - 2601 (source: NCBI BLink).  protein_id AT1G36070.1p  transcript_id AT1G36070.1  protein_id AT1G36070.1p  transcript_id AT1G36070.1  
At1g36078	chr1:013482632	0.0	C/13482632-13482651,13482282-13482372,13481697-13481873	AT1G36078.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G36078.1p  transcript_id AT1G36078.1  protein_id AT1G36078.1p  transcript_id AT1G36078.1  
At1g36080	chr1:013483143	0.0	W/13483143-13485572	AT1G36080.1  mRNA_TE_gene  pseudo  gene_syn F5J5.9, F5J5_9  note Transposable element gene, pseudogene, hypothetical protein, contains Pfam profile PF03384: Drosophila protein of unknown function, DUF287  
At1g36090	chr1:013487657	0.0	C/13487657-13489700	AT1G36090.1  mRNA_TE_gene  pseudo  gene_syn F5J5.10, F5J5_10  note Transposable element gene, Mutator-like transposase family, has a 1.2e-74 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g36095	chr1:013492323	0.0	C/13492323-13492725,13491848-13491961,13491370-13491758	AT1G36095.1  CDS  gene_syn F5J5.11, F5J5_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF659 (InterPro:IPR007021), Protein of unknown function DUF1544 (InterPro:IPR011523); BEST Arabidopsis thaliana protein match is: hAT dimerisation domain-containing protein (TAIR:AT3G22220.2); Has 342 Blast hits to 317 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 335; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G36095.1p  transcript_id AT1G36095.1  protein_id AT1G36095.1p  transcript_id AT1G36095.1  
At1g36100	chr1:013494652	0.0	W/13494652-13495215	AT1G36100.1  CDS  gene_syn F5J5.12, F5J5_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product myosin heavy chain-related  note myosin heavy chain-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT5G32590.1); Has 46 Blast hits to 46 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G36100.1p  transcript_id AT1G36100.1  protein_id AT1G36100.1p  transcript_id AT1G36100.1  
At1g36105	chr1:013499042	0.0	W/13499042-13500993	AT1G36105.1  mRNA_TE_gene  pseudo  gene_syn F5J5.13, F5J5_13  note Transposable element gene, Mutator-like transposase family, has a 1.7e-33 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At1g36110	chr1:013503912	0.0	C/13503912-13506396	AT1G36110.1  mRNA_TE_gene  pseudo  gene_syn F5J5.14, F5J5_14  note Transposable element gene, copia-like retrotransposon family, has a 2.2e-59 P-value blast match to gb|AAO73521.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At1g36120	chr1:013509837	0.0	C/13509837-13514564	AT1G36120.1  mRNA_TE_gene  pseudo  gene_syn F5J5.15, F5J5_15  note Transposable element gene, gypsy-like retrotransposon family, has a 9.8e-283 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At1g36130	chr1:013516325	0.0	C/13516325-13520545	AT1G36130.1  mRNA_TE_gene  pseudo  gene_syn F5J5.16, F5J5_16  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.2e-84 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g36140	chr1:013524940	0.0	C/13524940-13527049	AT1G36140.1  mRNA_TE_gene  pseudo  gene_syn F5J5.18  note Transposable element gene, pseudogene, hypothetical protein  
At1g36150	chr1:013528257	0.0	W/13528257-13528620,13528713-13528742,13529094-13529470	AT1G36150.1  CDS  gene_syn F5J5.27, F5J5_27  go_process lipid transport|GO:0006869||IEA  go_function lipid binding|GO:0008289||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to membrane; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT4G08670.1); Has 27626 Blast hits to 12556 proteins in 848 species: Archae - 46; Bacteria - 3088; Metazoa - 7941; Fungi - 4909; Plants - 4540; Viruses - 1169; Other Eukaryotes - 5933 (source: NCBI BLink).  protein_id AT1G36150.1p  transcript_id AT1G36150.1  protein_id AT1G36150.1p  transcript_id AT1G36150.1  
At1g36160	chr1:013534196	0.0	W/13534196-13534537,13534689-13534895,13534982-13535143,13535225-13535317,13535451-13535546,13535727-13535900,13535994-13536087,13536183-13536370,13536453-13536503,13536578-13536617,13536706-13536830,13536907-13537023,13537099-13537173,13537250-13537306,13537424-13537528,13537640-13537726,13537824-13538015,13538090-13538278,13538358-13538468,13538568-13538657,13538740-13538916,13539007-13539084,13539160-13539282,13539356-13539625,13539729-13540060,13540140-13540377,13540458-13540810,13540891-13541104,13541200-13541376,13541464-13543614,13543717-13543773	AT1G36160.1  CDS  gene_syn ACC1, ACETYL-COENZYME A CARBOXYLASE 1, AT-ACC1, EMB22, EMBRYO DEFECTIVE 22, GK, GURKE, PAS3, PASTICCINO 3  gene ACC1  function Encodes acetyl-CoA carboxylase. Mutant displays uncoordinated cell divisions which are enhanced by cytokinins. Mutant also has aberrant organization of the apical region in the embryo and abnormal root and shoot development. Essential for very long chain fatty acid elongation.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to cytokinin stimulus|GO:0009735|9449673|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|9011083|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|9449673|IMP  go_process meristem structural organization|GO:0009933|9011083|IMP  go_process primary shoot apical meristem specification|GO:0010072|12943542|IMP  go_process fatty acid elongation|GO:0030497|12943542|IMP  go_process root development|GO:0048364|9449673|IMP  go_process shoot development|GO:0048367|9449673|IMP  go_function acetyl-CoA carboxylase activity|GO:0003989|7551584|ISS  go_function acetyl-CoA carboxylase activity|GO:0003989||ISS  product ACC1 (ACETYL-COENZYME A CARBOXYLASE 1); acetyl-CoA carboxylase  note ACETYL-COENZYME A CARBOXYLASE 1 (ACC1); FUNCTIONS IN: acetyl-CoA carboxylase activity; INVOLVED IN: in 7 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acetyl-coenzyme A carboxyltransferase, N-terminal (InterPro:IPR011762), Carboxyl transferase (InterPro:IPR000022), Biotin/lipoyl attachment (InterPro:IPR000089), Carbamoyl phosphate synthase, large subunit, N-terminal (InterPro:IPR005481), PreATP-grasp-like fold (InterPro:IPR016185), ATP-grasp fold (InterPro:IPR011761), Biotin carboxylase, C-terminal (InterPro:IPR005482), Single hybrid motif (InterPro:IPR011053), Carbamoyl phosphate synthetase, large subunit, ATP-binding (InterPro:IPR005479), Acetyl-CoA carboxylase, central region (InterPro:IPR013537), Biotin carboxylation region (InterPro:IPR011764), Biotin-binding site (InterPro:IPR001882), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), Acetyl-coenzyme A carboxyltransferase, C-terminal (InterPro:IPR011763), Pre-ATP-grasp fold (InterPro:IPR013817), Rudiment single hybrid motif (InterPro:IPR011054); BEST Arabidopsis thaliana protein match is: ACC2 (ACETYL-COA CARBOXYLASE 2); acetyl-CoA carboxylase (TAIR:AT1G36180.1); Has 23574 Blast hits to 21113 proteins in 2046 species: Archae - 378; Bacteria - 11597; Metazoa - 1368; Fungi - 682; Plants - 730; Viruses - 0; Other Eukaryotes - 8819 (source: NCBI BLink).  protein_id AT1G36160.1p  transcript_id AT1G36160.1  protein_id AT1G36160.1p  transcript_id AT1G36160.1  
At1g36180	chr1:013546047	0.0	W/13546047-13546311,13546515-13546897,13546976-13547182,13547263-13547424,13547502-13547594,13547680-13547775,13550288-13550461,13550543-13550636,13550721-13550908,13550992-13551042,13551126-13551169,13551253-13551376,13551458-13551574,13551650-13551724,13551802-13551858,13551984-13552088,13552199-13552285,13552383-13552574,13552660-13552848,13552930-13553040,13553140-13553229,13553316-13553492,13553582-13553659,13553743-13553865,13553940-13554209,13554315-13554643,13554739-13554976,13555063-13555415,13555500-13555713,13555801-13555977,13556064-13558214,13558283-13558339	AT1G36180.1  CDS  gene_syn ACC2, ACETYL-COA CARBOXYLASE 2, F15C21.2, F15C21_2  gene ACC2  function acetyl-CoA carboxylase 2 (ACC2)  go_component chloroplast|GO:0009507||IEA  go_process fatty acid biosynthetic process|GO:0006633||IEA  go_process metabolic process|GO:0008152||IEA  go_function acetyl-CoA carboxylase activity|GO:0003989|7551584|ISS  product ACC2 (ACETYL-COA CARBOXYLASE 2); acetyl-CoA carboxylase  note ACETYL-COA CARBOXYLASE 2 (ACC2); FUNCTIONS IN: acetyl-CoA carboxylase activity; INVOLVED IN: metabolic process, fatty acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Acetyl-coenzyme A carboxyltransferase, N-terminal (InterPro:IPR011762), Carboxyl transferase (InterPro:IPR000022), Biotin/lipoyl attachment (InterPro:IPR000089), Carbamoyl phosphate synthase, large subunit, N-terminal (InterPro:IPR005481), PreATP-grasp-like fold (InterPro:IPR016185), Biotin carboxylase, C-terminal (InterPro:IPR005482), ATP-grasp fold (InterPro:IPR011761), Single hybrid motif (InterPro:IPR011053), Carbamoyl phosphate synthetase, large subunit, ATP-binding (InterPro:IPR005479), Acetyl-CoA carboxylase, central region (InterPro:IPR013537), Biotin carboxylation region (InterPro:IPR011764), Biotin-binding site (InterPro:IPR001882), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), Acetyl-coenzyme A carboxyltransferase, C-terminal (InterPro:IPR011763), Rudiment single hybrid motif (InterPro:IPR011054), Pre-ATP-grasp fold (InterPro:IPR013817); BEST Arabidopsis thaliana protein match is: ACC1 (ACETYL-COENZYME A CARBOXYLASE 1); acetyl-CoA carboxylase (TAIR:AT1G36160.1); Has 23018 Blast hits to 20715 proteins in 2053 species: Archae - 362; Bacteria - 11339; Metazoa - 1367; Fungi - 675; Plants - 738; Viruses - 0; Other Eukaryotes - 8537 (source: NCBI BLink).  protein_id AT1G36180.1p  transcript_id AT1G36180.1  protein_id AT1G36180.1p  transcript_id AT1G36180.1  
At1g36180	chr1:013546047	0.0	W/13546047-13546311,13546515-13546897,13546976-13547182,13547263-13547424,13547502-13547594,13547680-13547853	AT1G36180.2  CDS  gene_syn ACC2, ACETYL-COA CARBOXYLASE 2, F15C21.2, F15C21_2  gene ACC2  function acetyl-CoA carboxylase 2 (ACC2)  go_component chloroplast|GO:0009507||IEA  go_process metabolic process|GO:0008152||IEA  go_function acetyl-CoA carboxylase activity|GO:0003989|7551584|ISS  product ACC2 (ACETYL-COA CARBOXYLASE 2); acetyl-CoA carboxylase  note ACETYL-COA CARBOXYLASE 2 (ACC2); FUNCTIONS IN: acetyl-CoA carboxylase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Carbamoyl phosphate synthase, large subunit, N-terminal (InterPro:IPR005481), Carbamoyl phosphate synthetase, large subunit, ATP-binding (InterPro:IPR005479), ATP-grasp fold, subdomain 1 (InterPro:IPR013815), PreATP-grasp-like fold (InterPro:IPR016185), Biotin carboxylation region (InterPro:IPR011764), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), Pre-ATP-grasp fold (InterPro:IPR013817); BEST Arabidopsis thaliana protein match is: ACC1 (ACETYL-COENZYME A CARBOXYLASE 1); acetyl-CoA carboxylase (TAIR:AT1G36160.1); Has 11416 Blast hits to 11414 proteins in 1700 species: Archae - 128; Bacteria - 5286; Metazoa - 789; Fungi - 385; Plants - 509; Viruses - 0; Other Eukaryotes - 4319 (source: NCBI BLink).  protein_id AT1G36180.2p  transcript_id AT1G36180.2  protein_id AT1G36180.2p  transcript_id AT1G36180.2  
At1g36185	chr1:013560124	0.0	W/13560124-13564586	AT1G36185.1  mRNA_TE_gene  pseudo  gene_syn F15C21.3  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At1g36190	chr1:013574382	0.0	C/13574382-13576085	AT1G36190.1  mRNA_TE_gene  pseudo  gene_syn F15C21.15, F15C21_15  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 8.5e-119 P-value blast match to At1g36190.1/92-340 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At1g36200	chr1:013577455	0.0	C/13577455-13580996	AT1G36200.1  mRNA_TE_gene  pseudo  gene_syn F15C21.14  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 1.7e-150 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At1g36210	chr1:013594514	0.0	W/13594514-13597863	AT1G36210.1  mRNA_TE_gene  pseudo  gene_syn F15C21.4  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.1e-71 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g36220	chr1:013601056	0.0	C/13601056-13601579	AT1G36220.1  pseudogenic_transcript  pseudo  gene_syn F15C21.13  note pseudogene, seryl-tRNA synthetase, similar to GI:3319776 from (Zea mays); blastp match of 70% identity and 1.6e-30 P-value to SP|O81983|SYS_HELAN Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS). (Common sunflower) {Helianthus annuus}  
At1g36225	chr1:013606640	0.0	W/13606640-13607930	AT1G36225.1  mRNA_TE_gene  pseudo  gene_syn F15C21.5  note Transposable element gene, Mutator-like transposase family, has a 6.4e-18 P-value blast match to Q9S9L6 /322-461 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g36230	chr1:013614027	0.0	C/13614027-13614051,13613829-13613910,13613431-13613501,13613280-13613357,13613079-13613195,13612861-13612981,13612633-13612755,13612460-13612504,13612296-13612366,13612059-13612220,13611890-13611975,13611136-13611234,13610985-13611035	AT1G36230.1  CDS  gene_syn F15C21.12, F15C21_12  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1985 (InterPro:IPR015410); Has 5512 Blast hits to 562 proteins in 48 species: Archae - 0; Bacteria - 5437; Metazoa - 52; Fungi - 19; Plants - 1; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G36230.1p  transcript_id AT1G36230.1  protein_id AT1G36230.1p  transcript_id AT1G36230.1  
At1g36240	chr1:013614890	0.0	W/13614890-13614910,13614992-13615097,13615179-13615280,13616037-13616105,13616193-13616233	AT1G36240.1  CDS  gene_syn F15C21.6, F15C21_6  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 60S ribosomal protein L30 (RPL30A)  note 60S ribosomal protein L30 (RPL30A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit; EXPRESSED IN: shoot apex, hypocotyl, root, seed; EXPRESSED DURING: F mature embryo stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038), Ribosomal protein L30e (InterPro:IPR000231); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L30 (RPL30B) (TAIR:AT1G77940.1); Has 765 Blast hits to 765 proteins in 280 species: Archae - 141; Bacteria - 1; Metazoa - 274; Fungi - 97; Plants - 93; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT1G36240.1p  transcript_id AT1G36240.1  protein_id AT1G36240.1p  transcript_id AT1G36240.1  
At1g36250	chr1:013617739	0.0	W/13617739-13623656	AT1G36250.1  mRNA_TE_gene  pseudo  gene_syn F15C21.7  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 7.0e-18 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)  
At1g36260	chr1:013625930	0.0	C/13625930-13628052	AT1G36260.1  mRNA_TE_gene  pseudo  gene_syn F15C21.11, F15C21_11  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 4.2e-91 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At1g36270	chr1:013628848	0.0	C/13628848-13633367	AT1G36270.1  mRNA_TE_gene  pseudo  gene_syn F15C21.10  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 6.5e-118 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At1g36272	chr1:013635336	0.0	C/13635336-13635521	AT1G36272.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G36272.1p  transcript_id AT1G36272.1  protein_id AT1G36272.1p  transcript_id AT1G36272.1  
At1g36280	chr1:013640600	0.0	W/13640600-13640758,13640836-13640988,13641081-13641296,13641375-13641557,13641636-13641857,13641935-13642051,13642132-13642275,13642360-13642461,13642534-13642602,13642690-13642908	AT1G36280.1  CDS  gene_syn F15C21.8, F15C21_8  go_component chloroplast|GO:0009507||IEA  go_process IMP biosynthetic process|GO:0006188||IEA  go_process purine base biosynthetic process|GO:0009113||IEA  go_process purine ribonucleotide biosynthetic process|GO:0009152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity|GO:0004018||IEA  go_function N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity|GO:0004018||ISS  product adenylosuccinate lyase, putative / adenylosuccinase, putative  note adenylosuccinate lyase, putative / adenylosuccinase, putative; FUNCTIONS IN: N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, catalytic activity; INVOLVED IN: purine ribonucleotide biosynthetic process, purine base biosynthetic process, IMP biosynthetic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Adenylosuccinate lyase C-terminal (InterPro:IPR013539), L-Aspartase-like (InterPro:IPR008948), Adenylosuccinate lyase (InterPro:IPR004769), Fumarate lyase (InterPro:IPR000362); BEST Arabidopsis thaliana protein match is: adenylosuccinate lyase, putative / adenylosuccinase, putative (TAIR:AT4G18440.1); Has 7866 Blast hits to 7864 proteins in 1478 species: Archae - 152; Bacteria - 3810; Metazoa - 219; Fungi - 205; Plants - 55; Viruses - 0; Other Eukaryotes - 3425 (source: NCBI BLink).  protein_id AT1G36280.1p  transcript_id AT1G36280.1  protein_id AT1G36280.1p  transcript_id AT1G36280.1  
At1g36290	chr1:013643131	0.0	C/13643131-13644547	AT1G36290.1  mRNA_TE_gene  pseudo  gene_syn F15C21.9  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.7e-09 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At1g36300	chr1:013647773	0.0	C/13647773-13652173	AT1G36300.1  mRNA_TE_gene  pseudo  gene_syn F16I10.1  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.1e-218 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g36305	chr1:013660680	0.0	W/13660680-13665533	AT1G36305.1  mRNA_TE_gene  pseudo  gene_syn F7F23.2  note Transposable element gene, gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At1g36310	chr1:013669644	0.0	W/13669644-13670758,13670835-13670934	AT1G36310.1  CDS  gene_syn F7F23.3, F7F23_3  go_process metabolic process|GO:0008152||IEA  go_function methyltransferase activity|GO:0008168||IEA  product methyltransferase  note methyltransferase; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); Has 2306 Blast hits to 2202 proteins in 571 species: Archae - 170; Bacteria - 1072; Metazoa - 276; Fungi - 101; Plants - 31; Viruses - 0; Other Eukaryotes - 656 (source: NCBI BLink).  protein_id AT1G36310.1p  transcript_id AT1G36310.1  protein_id AT1G36310.1p  transcript_id AT1G36310.1  
At1g36310	chr1:013669644	0.0	W/13669644-13670758,13670835-13670934	AT1G36310.2  CDS  gene_syn F7F23.3, F7F23_3  go_process metabolic process|GO:0008152||IEA  go_function methyltransferase activity|GO:0008168||IEA  product methyltransferase  note methyltransferase; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); Has 2306 Blast hits to 2202 proteins in 571 species: Archae - 170; Bacteria - 1072; Metazoa - 276; Fungi - 101; Plants - 31; Viruses - 0; Other Eukaryotes - 656 (source: NCBI BLink).  protein_id AT1G36310.2p  transcript_id AT1G36310.2  protein_id AT1G36310.2p  transcript_id AT1G36310.2  
At1g36320	chr1:013671876	0.0	W/13671876-13672020,13672440-13672774,13672849-13673020,13673109-13673353,13673498-13673685,13673780-13673939	AT1G36320.1  CDS  gene_syn F7F23.4, F7F23_4  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37920.1); Has 53 Blast hits to 52 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G36320.1p  transcript_id AT1G36320.1  protein_id AT1G36320.1p  transcript_id AT1G36320.1  
At1g36330	chr1:013677206	0.0	C/13677206-13680593	AT1G36330.1  mRNA_TE_gene  pseudo  gene_syn F7F23.5  note Transposable element gene, gypsy-like retrotransposon family, has a 1.1e-71 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At1g36340	chr1:013684837	0.0	C/13684837-13684924,13684234-13684361,13684030-13684134,13683791-13683934	AT1G36340.1  CDS  gene_syn F7F23.6, F7F23_6, UBC31, ubiquitin-conjugating enzyme 31  gene UBC31  go_component vacuole|GO:0005773|15539469|IDA  go_process post-translational protein modification|GO:0043687||IEA  go_process regulation of protein metabolic process|GO:0051246||IEA  go_function small conjugating protein ligase activity|GO:0019787||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC31 (ubiquitin-conjugating enzyme 31); small conjugating protein ligase/ ubiquitin-protein ligase  note ubiquitin-conjugating enzyme 31 (UBC31); FUNCTIONS IN: ubiquitin-protein ligase activity, small conjugating protein ligase activity; INVOLVED IN: regulation of protein metabolic process, post-translational protein modification; LOCATED IN: vacuole; EXPRESSED IN: pedicel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC11 (UBIQUITIN-CONJUGATING ENZYME 11); ubiquitin-protein ligase (TAIR:AT3G08690.1); Has 7673 Blast hits to 7668 proteins in 305 species: Archae - 0; Bacteria - 0; Metazoa - 3796; Fungi - 1414; Plants - 1125; Viruses - 22; Other Eukaryotes - 1316 (source: NCBI BLink).  protein_id AT1G36340.1p  transcript_id AT1G36340.1  protein_id AT1G36340.1p  transcript_id AT1G36340.1  
At1g36350	chr1:013686426	0.0	W/13686426-13686498	AT1G36350.1  tRNA  gene_syn 60027.TRNA-ARG-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: TCT)  transcript_id AT1G36350.1  
At1g36360	chr1:013689534	0.0	W/13689534-13695235	AT1G36360.1  mRNA_TE_gene  pseudo  gene_syn F7F23.8  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 4.4e-39 P-value blast match to GB:BAA20419 reverse transcriptase (LINE-element) (Mus musculus)  
At1g36370	chr1:013697521	0.0	C/13697521-13698576,13696745-13697150,13696558-13696659,13696240-13696472	AT1G36370.1  CDS  gene_syn F7F23.9, F7F23_9, SHM7, serine hydroxymethyltransferase 7  gene SHM7  function Encodes a putative serine hydroxymethyltransferase.  go_process response to cadmium ion|GO:0046686|17075075|IEP  go_function catalytic activity|GO:0003824||IEA  go_function glycine hydroxymethyltransferase activity|GO:0004372||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_process glycine metabolic process|GO:0006544||ISS  go_process L-serine metabolic process|GO:0006563||ISS  go_function glycine hydroxymethyltransferase activity|GO:0004372||ISS  product SHM7 (serine hydroxymethyltransferase 7); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding  note serine hydroxymethyltransferase 7 (SHM7); FUNCTIONS IN: pyridoxal phosphate binding, glycine hydroxymethyltransferase activity, catalytic activity; INVOLVED IN: response to cadmium ion, glycine metabolic process, L-serine metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Glycine hydroxymethyltransferase (InterPro:IPR001085); BEST Arabidopsis thaliana protein match is: SHM6 (serine hydroxymethyltransferase 6); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding (TAIR:AT1G22020.1); Has 8281 Blast hits to 8263 proteins in 1618 species: Archae - 141; Bacteria - 3511; Metazoa - 319; Fungi - 186; Plants - 212; Viruses - 6; Other Eukaryotes - 3906 (source: NCBI BLink).  protein_id AT1G36370.1p  transcript_id AT1G36370.1  protein_id AT1G36370.1p  transcript_id AT1G36370.1  
At1g36380	chr1:013700917	0.0	W/13700917-13701013,13701108-13701264,13701346-13701346	AT1G36380.1  CDS  gene_syn F7F23.10, F7F23_10  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 5 Blast hits to 5 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G36380.1p  transcript_id AT1G36380.1  protein_id AT1G36380.1p  transcript_id AT1G36380.1  
At1g36390	chr1:013703345	0.0	C/13703345-13703524,13702788-13703264,13701811-13701993	AT1G36390.1  CDS  gene_syn F7F23.11, F7F23_11  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_process protein folding|GO:0006457||IEA  go_function adenyl-nucleotide exchange factor activity|GO:0000774||IEA  go_function protein binding|GO:0005515||IEA  go_function protein homodimerization activity|GO:0042803||IEA  go_function chaperone binding|GO:0051087||IEA  go_process protein folding|GO:0006457||ISS  product co-chaperone grpE family protein  note co-chaperone grpE family protein; FUNCTIONS IN: protein binding, protein homodimerization activity, chaperone binding, adenyl-nucleotide exchange factor activity; INVOLVED IN: protein folding; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GrpE nucleotide exchange factor (InterPro:IPR000740), GrpE nucleotide exchange factor, coiled-coil (InterPro:IPR013805), GrpE nucleotide exchange factor, head (InterPro:IPR009012); BEST Arabidopsis thaliana protein match is: EMB1241 (embryo defective 1241); adenyl-nucleotide exchange factor/ chaperone binding / protein binding / protein homodimerization (TAIR:AT5G17710.2); Has 5393 Blast hits to 5393 proteins in 1494 species: Archae - 72; Bacteria - 2794; Metazoa - 112; Fungi - 77; Plants - 86; Viruses - 0; Other Eukaryotes - 2252 (source: NCBI BLink).  protein_id AT1G36390.1p  transcript_id AT1G36390.1  protein_id AT1G36390.1p  transcript_id AT1G36390.1  
At1g36390	chr1:013703345	0.0	C/13703345-13703524,13702788-13703264,13701811-13701993	AT1G36390.2  CDS  gene_syn F7F23.11, F7F23_11  go_component chloroplast|GO:0009507|18431481|IDA  go_process protein folding|GO:0006457||IEA  go_function adenyl-nucleotide exchange factor activity|GO:0000774||IEA  go_function protein binding|GO:0005515||IEA  go_function protein homodimerization activity|GO:0042803||IEA  go_function chaperone binding|GO:0051087||IEA  go_process protein folding|GO:0006457||ISS  product co-chaperone grpE family protein  note co-chaperone grpE family protein; FUNCTIONS IN: protein binding, adenyl-nucleotide exchange factor activity, protein homodimerization activity, chaperone binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GrpE nucleotide exchange factor (InterPro:IPR000740), GrpE nucleotide exchange factor, coiled-coil (InterPro:IPR013805), GrpE nucleotide exchange factor, head (InterPro:IPR009012); BEST Arabidopsis thaliana protein match is: EMB1241 (embryo defective 1241); adenyl-nucleotide exchange factor/ chaperone binding / protein binding / protein homodimerization (TAIR:AT5G17710.2); Has 5393 Blast hits to 5393 proteins in 1494 species: Archae - 72; Bacteria - 2794; Metazoa - 112; Fungi - 77; Plants - 86; Viruses - 0; Other Eukaryotes - 2252 (source: NCBI BLink).  protein_id AT1G36390.2p  transcript_id AT1G36390.2  protein_id AT1G36390.2p  transcript_id AT1G36390.2  
At1g36395	chr1:013707880	0.0	W/13707880-13708633	AT1G36395.1  mRNA_TE_gene  pseudo  note Transposable element gene  
At1g36400	chr1:013711163	0.0	W/13711163-13711683	AT1G36400.1  mRNA_TE_gene  pseudo  gene_syn F7F23.12  note Transposable element gene, pseudogene, hypothetical protein, similar to hypothetical protein GB:AAD48962 from (Arabidopsis thaliana)  
At1g36403	chr1:013713118	0.0	C/13713118-13713789	AT1G36403.1  mRNA_TE_gene  pseudo  gene_syn F7F23.13  note Transposable element gene, Mutator-like transposase family, has a 1.4e-13 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g36406	chr1:013715003	0.0	C/13715003-13715997	AT1G36406.1  mRNA_TE_gene  pseudo  gene_syn F7F23.14  note Transposable element gene, Mutator-like transposase family, has a 2.1e-26 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g36420	chr1:013720795	0.0	W/13720795-13721659	AT1G36420.1  mRNA_TE_gene  pseudo  gene_syn F7F23.16  note Transposable element gene, gypsy-like retrotransposon family, has a 0.00011 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At1g36430	chr1:013722744	0.0	W/13722744-13724425	AT1G36430.1  mRNA_TE_gene  pseudo  gene_syn F28J9.14, F28J9_14  note Transposable element gene, retrotransposon family  
At1g36440	chr1:013725802	0.0	W/13725802-13727976	AT1G36440.1  mRNA_TE_gene  pseudo  gene_syn F28J9.13, F28J9_13  note Transposable element gene, pseudogene, hypothetical protein, contains Pfam profile PF03384: Drosophila protein of unknown function, DUF287  
At1g36441	chr1:013728578	0.0	C/13728578-13729561	AT1G36441.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G66235  
At1g36445	chr1:013730184	0.0	W/13730184-13731569	AT1G36445.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to OSJNBa0026J14.30, blastp match of 62% identity and 5.5e-108 P-value to GP|20146463|dbj|BAB89243.1||AP004231 OSJNBa0026J14.30 {Oryza sativa (japonica cultivar-group)}  
At1g36450	chr1:013732952	0.0	W/13732952-13734576	AT1G36450.1  mRNA_TE_gene  pseudo  gene_syn F28J9.19  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 2.2e-71 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota)  
At1g36460	chr1:013735498	0.0	C/13735498-13737957	AT1G36460.1  mRNA_TE_gene  pseudo  gene_syn F28J9.12, F28J9_12  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 1.7e-42 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At1g36470	chr1:013738829	0.0	C/13738829-13742675	AT1G36470.1  mRNA_TE_gene  pseudo  gene_syn F28J9.11, F28J9_11  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 4.8e-152 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At1g36480	chr1:013743574	0.0	W/13743574-13745382	AT1G36480.1  mRNA_TE_gene  pseudo  gene_syn F28J9.9, F28J9_9  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 1.6e-35 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)  
At1g36485	chr1:013746698	0.0	W/13746698-13748098	AT1G36485.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 2.2e-94 P-value blast match to At1g15560.1/58-302 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At1g36490	chr1:013751349	0.0	W/13751349-13753857	AT1G36490.1  mRNA_TE_gene  pseudo  gene_syn F28J9.8  note Transposable element gene, pseudogene, hypothetical protein  
At1g36495	chr1:013754937	0.0	W/13754937-13756247	AT1G36495.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At1g36500	chr1:013757370	0.0	W/13757370-13758805	AT1G36500.1  mRNA_TE_gene  pseudo  gene_syn F28J9.6  note Transposable element gene, pseudogene, similar to putative helicase, blastp match of 41% identity and 8.7e-93 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)}  
At1g36510	chr1:013761926	0.0	W/13761926-13762063,13762154-13762265,13762504-13762573,13763065-13763200,13763291-13763365,13763415-13763474,13763596-13763712,13763825-13763986,13764080-13764265	AT1G36510.1  CDS  gene_syn F28J9.5, F28J9_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G32260.1); Has 56 Blast hits to 46 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G36510.1p  transcript_id AT1G36510.1  protein_id AT1G36510.1p  transcript_id AT1G36510.1  
At1g36520	chr1:013768837	0.0	W/13768837-13774806	AT1G36520.1  mRNA_TE_gene  pseudo  gene_syn F28J9.24  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.4e-307 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g36530	chr1:013782102	0.0	C/13782102-13784776	AT1G36530.1  mRNA_TE_gene  pseudo  gene_syn F28J9.21  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.7e-81 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g36540	chr1:013788723	0.0	W/13788723-13792563	AT1G36540.1  mRNA_TE_gene  pseudo  gene_syn F28J9.20  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.7e-301 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g36550	chr1:013795531	0.0	W/13795531-13797285	AT1G36550.1  mRNA_TE_gene  pseudo  gene_syn F28J9.18, F28J9_18  note Transposable element gene, similar to retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] (GB:ABA98367.2); contains InterPro domain Retrotransposon gag protein; (InterPro:IPR005162)  
At1g36560	chr1:013799886	0.0	C/13799886-13801807	AT1G36560.1  mRNA_TE_gene  pseudo  gene_syn F28J9.22, F28J9_22  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.1e-108 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g36570	chr1:013803929	0.0	W/13803929-13806745	AT1G36570.1  mRNA_TE_gene  pseudo  gene_syn F28J9.3  note Transposable element gene, pseudogene, similar to putative helicase, blastp match of 46% identity and 2.5e-78 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)}  
At1g36580	chr1:013818076	0.0	C/13818076-13818106,13817778-13817980,13817546-13817638,13817351-13817425,13816459-13816605	AT1G36580.1  CDS  gene_syn F28J9.2, F28J9_2  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: SDRB (SHORT-CHAIN DEHYDROGENASE-REDUCTASE B); binding / catalytic/ oxidoreductase (TAIR:AT3G12800.1); Has 374 Blast hits to 374 proteins in 114 species: Archae - 0; Bacteria - 176; Metazoa - 48; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT1G36580.1p  transcript_id AT1G36580.1  protein_id AT1G36580.1p  transcript_id AT1G36580.1  
At1g36590	chr1:013818976	0.0	W/13818976-13823475	AT1G36590.1  mRNA_TE_gene  pseudo  gene_syn F28J9.17, F28J9_17  note Transposable element gene, gypsy-like retrotransposon family, has a 2.7e-200 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At1g36595	chr1:013824802	0.0	C/13824802-13825075	AT1G36595.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At1g36600	chr1:013825466	0.0	C/13825466-13827399	AT1G36600.1  mRNA_TE_gene  pseudo  gene_syn F28J9.1, F28J9_1  note Transposable element gene, copia-like retrotransposon family, has a 8.9e-21 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At1g36605	chr1:013828269	0.0	C/13828269-13828477	AT1G36605.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.0e-12 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At1g36610	chr1:013828493	0.0	W/13828493-13831555	AT1G36610.1  mRNA_TE_gene  pseudo  gene_syn T15P17.1, T15P17_1  note Transposable element gene, gypsy-like retrotransposon family, has a 9.1e-283 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At1g36620	chr1:013832106	0.0	C/13832106-13835564	AT1G36620.1  mRNA_TE_gene  pseudo  gene_syn T15P17.15, T15P17_15  note Transposable element gene, copia-like retrotransposon family, has a 3.6e-54 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At1g36622	chr1:013836823	0.0	C/13836823-13836925,13836417-13836538	AT1G36622.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G36640.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G36622.1p  transcript_id AT1G36622.1  protein_id AT1G36622.1p  transcript_id AT1G36622.1  
At1g36630	chr1:013840145	0.0	C/13840145-13847625	AT1G36630.1  mRNA_TE_gene  pseudo  gene_syn T15P17.14  note Transposable element gene, CACTA-like transposase family (Tnp1/En/Spm), has a 2.5e-213 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)  
At1g36640	chr1:013853481	0.0	C/13853481-13853583,13853176-13853300	AT1G36640.1  CDS  gene_syn T15P17.13, T15P17_13  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G36622.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G36640.1p  transcript_id AT1G36640.1  protein_id AT1G36640.1p  transcript_id AT1G36640.1  
At1g36650	chr1:013854499	0.0	C/13854499-13855674	AT1G36650.1  mRNA_TE_gene  pseudo  gene_syn T15P17.12  note Transposable element gene, pseudogene, similar to putative reverse transcriptase, blastp match of 26% identity and 8.3e-12 P-value to GP|20279456|gb|AAM18736.1|AC092548_14|AC092548 putative reverse transcriptase {Oryza sativa (japonica cultivar-group)}  
At1g36660	chr1:013861470	0.0	C/13861470-13862969	AT1G36660.1  pseudogenic_transcript  pseudo  gene_syn T15P17.11  note pseudogene, similar to P0529E05.9, blastp match of 38% identity and 2.8e-54 P-value to GP|18461196|dbj|BAB84393.1||AP003279 P0529E05.9 {Oryza sativa (japonica cultivar-group)}  
At1g36670	chr1:013864235	0.0	C/13864235-13865336	AT1G36670.1  mRNA_TE_gene  pseudo  gene_syn T15P17.10, T15P17_10  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G37050.1)  
At1g36675	chr1:013867568	0.0	W/13867568-13867879,13868004-13868085,13868160-13868288,13869169-13869225,13869264-13869490	AT1G36675.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT5G33390.1); Has 1833 Blast hits to 1251 proteins in 228 species: Archae - 8; Bacteria - 260; Metazoa - 613; Fungi - 229; Plants - 418; Viruses - 28; Other Eukaryotes - 277 (source: NCBI BLink).  protein_id AT1G36675.1p  transcript_id AT1G36675.1  protein_id AT1G36675.1p  transcript_id AT1G36675.1  
At1g36680	chr1:013871080	0.0	W/13871080-13872202	AT1G36680.1  mRNA_TE_gene  pseudo  gene_syn T15P17.2  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 3.6e-22 P-value blast match to At5g59620.1/14-257 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At1g36690	chr1:013873688	0.0	C/13873688-13875764	AT1G36690.1  mRNA_TE_gene  pseudo  gene_syn T15P17.9  note Transposable element gene, Mutator-like transposase family, has a 3.8e-68 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g36700	chr1:013877990	0.0	C/13877990-13878553	AT1G36700.1  pseudogenic_transcript  pseudo  gene_syn T15P17.8  note pseudogene, hypothetical protein  
At1g36710	chr1:013880249	0.0	W/13880249-13881542	AT1G36710.1  pseudogenic_transcript  pseudo  gene_syn T15P17.3  note pseudogene, pectinesterase, similar to PME1.9 (Lycopersicon esculentum) GI:1256267; blastp match of 50% identity and 3.9e-53 P-value to EGAD|63411|66293 pectinesterase 1 {Lycopersicon esculentum}  
At1g36720	chr1:013884483	0.0	W/13884483-13888886	AT1G36720.1  mRNA_TE_gene  pseudo  gene_syn T15P17.4  note Transposable element gene, gypsy-like retrotransposon family, has a 2.3e-308 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At1g36730	chr1:013898706	0.0	C/13898706-13900025	AT1G36730.1  CDS  gene_syn T15P17.7, T15P17_7  go_process translational initiation|GO:0006413||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_function binding|GO:0005488||IEA  go_process regulation of translational initiation|GO:0006446||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product eukaryotic translation initiation factor 5, putative / eIF-5, putative  note eukaryotic translation initiation factor 5, putative / eIF-5, putative; FUNCTIONS IN: binding, translation initiation factor activity; INVOLVED IN: translational initiation, regulation of translational initiation; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF2/IF5, N-terminal (InterPro:IPR016189), Translation initiation factor IF2/IF5, zinc-binding (InterPro:IPR016190), eIF4-gamma/eIF5/eIF2-epsilon (InterPro:IPR003307), Translation initiation factor IF2/IF5 (InterPro:IPR002735), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 5, putative / eIF-5, putative (TAIR:AT1G77840.1); Has 5606 Blast hits to 4139 proteins in 520 species: Archae - 153; Bacteria - 541; Metazoa - 1949; Fungi - 615; Plants - 279; Viruses - 38; Other Eukaryotes - 2031 (source: NCBI BLink).  protein_id AT1G36730.1p  transcript_id AT1G36730.1  protein_id AT1G36730.1p  transcript_id AT1G36730.1  
At1g36732	chr1:013900059	0.0	C/13900059-13900232	AT1G36732.1  CDS  gene_syn CPuORF19, Conserved peptide upstream open reading frame 19  gene CPuORF19  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF19 represents a conserved upstream opening reading frame relative to major ORF AT1G36730.1  product CPuORF19 (Conserved peptide upstream open reading frame 19)  note Conserved peptide upstream open reading frame 19 (CPuORF19); Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G36732.1p  transcript_id AT1G36732.1  protein_id AT1G36732.1p  transcript_id AT1G36732.1  
At1g36740	chr1:013908906	0.0	C/13908906-13910793	AT1G36740.1  mRNA_TE_gene  pseudo  gene_syn T15P17.6  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 8.4e-16 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)  
At1g36745	chr1:013911137	0.0	W/13911137-13911276,13911377-13911431,13911481-13911550,13911612-13911679	AT1G36745.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G36745.1p  transcript_id AT1G36745.1  protein_id AT1G36745.1p  transcript_id AT1G36745.1  
At1g36750	chr1:013913605	0.0	W/13913605-13914682	AT1G36750.1  mRNA_TE_gene  pseudo  gene_syn T15P17.5  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.5e-53 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g36756	chr1:013917331	0.0	W/13917331-13917475,13917572-13917816	AT1G36756.1  CDS  gene_syn T32O22.6, T32O22_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10602.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G36756.1p  transcript_id AT1G36756.1  protein_id AT1G36756.1p  transcript_id AT1G36756.1  
At1g36763	chr1:013921110	0.0	C/13921110-13921504	AT1G36763.1  mRNA_TE_gene  pseudo  gene_syn T32O22.5, T32O22_5  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05560.1)  
At1g36770	chr1:013921668	0.0	W/13921668-13925773	AT1G36770.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.3e-41 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g36775	chr1:013930101	0.0	W/13930101-13932323	AT1G36775.1  mRNA_TE_gene  pseudo  gene_syn T32O22.4  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.5e-38 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g36790	chr1:013936159	0.0	W/13936159-13938917	AT1G36790.1  mRNA_TE_gene  pseudo  gene_syn F1O3.17  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 6.7e-38 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g36795	chr1:013942799	0.0	C/13942799-13945667	AT1G36795.1  mRNA_TE_gene  pseudo  gene_syn T32O22.15, T32O22_15  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.9e-245 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g36800	chr1:013948347	0.0	C/13948347-13950729	AT1G36800.1  mRNA_TE_gene  pseudo  gene_syn F1O3.9  note Transposable element gene, gypsy-like retrotransposon family, has a 5.3e-108 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At1g36810	chr1:013950803	0.0	W/13950803-13953811	AT1G36810.1  mRNA_TE_gene  pseudo  gene_syn F1O3.1, F1O3_1  note Transposable element gene, pseudogene, hypothetical protein  
At1g36830	chr1:013954827	0.0	C/13954827-13955600	AT1G36830.1  mRNA_TE_gene  pseudo  gene_syn F1O3.3, F1O3_3  note Transposable element gene, gypsy-like retrotransposon family, has a 5.9e-38 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At1g36840	chr1:013955622	0.0	W/13955622-13958831	AT1G36840.1  mRNA_TE_gene  pseudo  gene_syn F1O3.12  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At1g36850	chr1:013959390	0.0	C/13959390-13961285	AT1G36850.1  mRNA_TE_gene  pseudo  gene_syn F1O3.14  note Transposable element gene, gypsy-like retrotransposon family, has a 4.2e-90 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays)  
At1g36880	chr1:013961890	0.0	C/13961890-13963772	AT1G36880.1  pseudogenic_transcript  pseudo  gene_syn F1O3.13  note pseudogene, similar to P0529E05.9, blastp match of 46% identity and 1.9e-119 P-value to GP|18461196|dbj|BAB84393.1||AP003279 P0529E05.9 {Oryza sativa (japonica cultivar-group)}  
At1g36890	chr1:013967607	0.0	C/13967607-13971416	AT1G36890.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 3.2e-20 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)  
At1g36910	chr1:013974517	0.0	C/13974517-13975976	AT1G36910.1  mRNA_TE_gene  pseudo  gene_syn F1O3.5, F1O3_5  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 4.0e-81 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At1g36915	chr1:013977809	0.0	C/13977809-13979110	AT1G36915.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to putative DNA/RNA binding protein, blastp match of 29% identity and 3.7e-07 P-value to GP|21952509|gb|AAM82603.1|AF525305_1|AF525305 putative DNA/RNA binding protein {Brassica napus}  
At1g36920	chr1:013983512	0.0	W/13983512-13983585,13983678-13983803,13983895-13983973,13984753-13984929,13985014-13985085,13985153-13985290	AT1G36920.1  CDS  gene_syn F1O3.6, F1O3_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, male gametophyte, flower; EXPRESSED DURING: M germinated pollen stage, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G05642.1); Has 8 Blast hits to 7 proteins in 3 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G36920.1p  transcript_id AT1G36920.1  protein_id AT1G36920.1p  transcript_id AT1G36920.1  
At1g36925	chr1:013986475	0.0	W/13986475-13986520,13986602-13986697,13986781-13986855,13986942-13987109,13987189-13987289	AT1G36925.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 56 Blast hits to 56 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 41; Fungi - 4; Plants - 1; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G36925.1p  transcript_id AT1G36925.1  protein_id AT1G36925.1p  transcript_id AT1G36925.1  
At1g36927	chr1:013991779	0.0	C/13991779-13993095	AT1G36927.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 3.8e-29 P-value blast match to GB:BAA01703 ORF (Ty1_Copia-element) (Drosophila simulans)  
At1g36933	chr1:013993196	0.0	C/13993196-13994997	AT1G36933.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 3.2e-15 P-value blast match to GB:BAA11674 ORF(AA 1-1338) (Ty1_Copia-element) (Nicotiana tabacum)  
At1g36936	chr1:013996759	0.0	C/13996759-13997730	AT1G36936.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to Putative copia-type polyprotein, blastp match of 43% identity and 2.1e-28 P-value to GP|15209144|gb|AAK91877.1|AC091665_3|AC091665 Putative copia-type polyprotein {Oryza sativa}  
At1g36940	chr1:014004158	0.0	W/14004158-14004706	AT1G36940.1  CDS  gene_syn T32E20.35, T32E20_35  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 7 growth stages; Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G36940.1p  transcript_id AT1G36940.1  protein_id AT1G36940.1p  transcript_id AT1G36940.1  
At1g36942	chr1:014006147	0.0	C/14006147-14006341	AT1G36942.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G36942.1p  transcript_id AT1G36942.1  protein_id AT1G36942.1p  transcript_id AT1G36942.1  
At1g36950	chr1:014010706	0.0	C/14010706-14010822,14010483-14010617,14010088-14010401,14009673-14009787	AT1G36950.1  CDS  gene_syn T32E20.33, T32E20_33  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger protein-related  note zinc finger protein-related; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00070.1); Has 1834 Blast hits to 1833 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 738; Fungi - 78; Plants - 724; Viruses - 2; Other Eukaryotes - 292 (source: NCBI BLink).  protein_id AT1G36950.1p  transcript_id AT1G36950.1  protein_id AT1G36950.1p  transcript_id AT1G36950.1  
At1g36960	chr1:014014796	0.0	W/14014796-14015044,14015212-14015508	AT1G36960.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25600.1); Has 51 Blast hits to 51 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G36960.1p  transcript_id AT1G36960.1  protein_id AT1G36960.1p  transcript_id AT1G36960.1  
At1g36970	chr1:014018350	0.0	C/14018350-14018356,14017829-14018221,14017084-14017559,14016944-14016982,14016760-14016867,14016385-14016681	AT1G36970.1  CDS  gene_syn T32E20.31, T32E20_31  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1985 (InterPro:IPR015410); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT1G31150.1); Has 104 Blast hits to 101 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G36970.1p  transcript_id AT1G36970.1  protein_id AT1G36970.1p  transcript_id AT1G36970.1  
At1g36975	chr1:014019941	0.0	W/14019941-14024331	AT1G36975.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.4e-171 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At1g36980	chr1:014025084	0.0	W/14025084-14025216,14025304-14025391,14026126-14026278,14026694-14026727	AT1G36980.1  CDS  gene_syn T32E20.29, T32E20_29  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0220 (InterPro:IPR007919); Has 305 Blast hits to 305 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 189; Fungi - 71; Plants - 35; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G36980.1p  transcript_id AT1G36980.1  protein_id AT1G36980.1p  transcript_id AT1G36980.1  
At1g36990	chr1:014029603	0.0	C/14029603-14029711,14028741-14029489,14028570-14028659,14027764-14028489,14027594-14027665	AT1G36990.1  CDS  gene_syn T32E20.28, T32E20_28  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08510.1); Has 4597 Blast hits to 1552 proteins in 255 species: Archae - 0; Bacteria - 986; Metazoa - 1160; Fungi - 777; Plants - 63; Viruses - 27; Other Eukaryotes - 1584 (source: NCBI BLink).  protein_id AT1G36990.1p  transcript_id AT1G36990.1  protein_id AT1G36990.1p  transcript_id AT1G36990.1  
At1g36992	chr1:014029923	0.0	W/14029923-14030768	AT1G36992.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G36990  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G36992.1  
At1g37000	chr1:014036038	0.0	W/14036038-14036127,14036199-14036262,14036640-14037145	AT1G37000.1  CDS  gene_syn T32E20.25, T32E20_25  go_component beta-galactosidase complex|GO:0009341||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  product beta-galactosidase  note beta-galactosidase; FUNCTIONS IN: beta-galactosidase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: beta-galactosidase complex; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944); BEST Arabidopsis thaliana protein match is: beta-galactosidase (TAIR:AT4G29200.1); Has 25 Blast hits to 24 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G37000.1p  transcript_id AT1G37000.1  protein_id AT1G37000.1p  transcript_id AT1G37000.1  
At1g37007	chr1:014039862	0.0	C/14039862-14040020	AT1G37007.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G37007.1p  transcript_id AT1G37007.1  protein_id AT1G37007.1p  transcript_id AT1G37007.1  
At1g37010	chr1:014040918	0.0	W/14040918-14040973,14041020-14041227	AT1G37010.1  CDS  gene_syn T32E20.23, T32E20_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: SPC98 (SPINDLE POLE BODY COMPONENT 98); tubulin binding (TAIR:AT5G06680.1); Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G37010.1p  transcript_id AT1G37010.1  protein_id AT1G37010.1p  transcript_id AT1G37010.1  
At1g37012	chr1:014042710	0.0	C/14042710-14043727	AT1G37012.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 1.7e-43 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)  
At1g37015	chr1:014044015	0.0	W/14044015-14044859	AT1G37015.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G06716.1)  
At1g37020	chr1:014046735	0.0	W/14046735-14046903,14046993-14047264,14047374-14047511,14047582-14047629,14047931-14048104,14048304-14048607,14048666-14048785,14049132-14049742	AT1G37020.1  CDS  gene_syn T32E20.20, T32E20_20  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_component cellular_component|GO:0005575||ND  product Ulp1 protease family protein  note Ulp1 protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1985 (InterPro:IPR015410), Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: Ulp1 protease family protein (TAIR:AT5G45570.1); Has 196 Blast hits to 179 proteins in 39 species: Archae - 1; Bacteria - 13; Metazoa - 14; Fungi - 13; Plants - 81; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT1G37020.1p  transcript_id AT1G37020.1  protein_id AT1G37020.1p  transcript_id AT1G37020.1  
At1g37030	chr1:014050455	0.0	W/14050455-14056318	AT1G37030.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 5.1e-17 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At1g37035	chr1:014056481	0.0	C/14056481-14058908	AT1G37035.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 5.6e-50 P-value blast match to Q9S9L1 /206-367 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g37036	chr1:014060525	0.0	C/14060525-14061004	AT1G37036.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 6.6e-26 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota)  
At1g37037	chr1:014066920	0.0	C/14066920-14067409	AT1G37037.1  mRNA_TE_gene  pseudo  note Transposable element gene  
At1g37038	chr1:014069502	0.0	W/14069502-14070837	AT1G37038.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 5.1e-87 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At1g37040	chr1:014071388	0.0	W/14071388-14076253	AT1G37040.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 2.3e-110 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota)  
At1g37045	chr1:014079031	0.0	C/14079031-14079707	AT1G37045.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42430.1)  
At1g37050	chr1:014079841	0.0	W/14079841-14083072	AT1G37050.1  mRNA_TE_gene  pseudo  gene_syn T32E20.10, T32E20_10  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G43320.1); similar to putative AP endonuclease/reverse transcriptase [Brassica napus] (GB:AAM82604.1); contains domain no description (G3D.3.60.10.10); contains domain DNase I-like (SSF56219); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446); contains domain Retrovirus zinc finger-like domains (SSF57756)  
At1g37060	chr1:014084522	0.0	W/14084522-14090143	AT1G37060.1  mRNA_TE_gene  pseudo  gene_syn T32E20.9  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.4e-248 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g37057	chr1:014094306	0.0	W/14094306-14097437	AT1G37057.1  mRNA_TE_gene  pseudo  gene_syn T32E20.6  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 7.8e-25 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At1g37063	chr1:014101593	0.0	C/14101593-14102348	AT1G37063.1  mRNA_TE_gene  pseudo  gene_syn T32E20.5, T32E20_5  note Transposable element gene, transposase-related, weak similarity to Tam3-transposase (Antirrhinum majus) GI:16064, PIR|A39652 Hobo element transposase HFL1 (Drosophila melanogaster)  
At1g37070	chr1:014103157	0.0	C/14103157-14105790	AT1G37070.1  mRNA_TE_gene  pseudo  gene_syn T32E20.1  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 5.5e-177 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g37080	chr1:014111458	0.0	C/14111458-14112255	AT1G37080.1  mRNA_TE_gene  pseudo  gene_syn F28L22.13, F28L22_13  note Transposable element gene, similar to DNA binding [Arabidopsis thaliana] (TAIR:AT4G01980.1); similar to hypothetical protein 26.t00020 [Brassica oleracea] (GB:ABD65000.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057)  
At1g37090	chr1:014114789	0.0	C/14114789-14116885	AT1G37090.1  mRNA_TE_gene  pseudo  gene_syn F28L22.19  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.8e-88 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g37095	chr1:014120423	0.0	W/14120423-14121025	AT1G37095.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 4.0e-16 P-value blast match to GB:AAA35184 ORF2 (Gypsy_Ty3-element) (Saccharomyces cerevisiae)  
At1g37100	chr1:014124806	0.0	C/14124806-14128188	AT1G37100.1  mRNA_TE_gene  pseudo  gene_syn F28L22.12  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 5.2e-203 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g37110	chr1:014130252	0.0	C/14130252-14134322	AT1G37110.1  mRNA_TE_gene  pseudo  gene_syn F28L22.3, F28L22_3  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At1g37113	chr1:014136413	0.0	W/14136413-14136675,14136761-14137344,14137848-14138245	AT1G37113.1  CDS  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G37113.1p  transcript_id AT1G37113.1  protein_id AT1G37113.1p  transcript_id AT1G37113.1  
At1g37120	chr1:014143806	0.0	C/14143806-14146001	AT1G37120.1  mRNA_TE_gene  pseudo  gene_syn F28L22.14  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 8.3e-14 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)  
At1g37130	chr1:014158617	0.0	W/14158617-14159661,14159848-14159988,14160085-14161652	AT1G37130.1  CDS  gene_syn B29, CHL3, CHLORATE RESISTANT 3, F28L22.2, F28L22_2, NIA2, NIA2-1, NITRATE REDUCTASE, NITRATE REDUCTASE 2, NR, NR2  gene NIA2  function Identified as a mutant resistant to chlorate. Encodes nitrate reductase structural gene. Involved in nitrate assimilation. Has nitrate reductase activity. Up-regulated by the fungus P. indica. Binds transcription factor At2g35940.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process nitric oxide biosynthetic process|GO:0006809|12446847|IMP  go_process response to light stimulus|GO:0009416|15908593|IMP  go_process response to symbiotic fungus|GO:0009610|15710607|IDA  go_process response to symbiotic fungus|GO:0009610|17397506|IEP  go_process nitrate assimilation|GO:0042128|8510658|IMP  go_function nitrate reductase activity|GO:0008940|1840922|IDA  go_function nitrate reductase activity|GO:0008940|2905260|ISS  go_function nitrate reductase activity|GO:0008940|8182055|IDA  go_function nitrate reductase (NADH) activity|GO:0009703|8182055|IDA  product NIA2 (NITRATE REDUCTASE 2); nitrate reductase (NADH)/ nitrate reductase  note NITRATE REDUCTASE 2 (NIA2); FUNCTIONS IN: nitrate reductase activity, nitrate reductase (NADH) activity; INVOLVED IN: nitrate assimilation, nitric oxide biosynthetic process, response to light stimulus, response to symbiotic fungus; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b5, heme-binding site (InterPro:IPR018506), Nitrate reductase NADH dependant (InterPro:IPR012137), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase FAD-binding region (InterPro:IPR008333), Immunoglobulin E-set (InterPro:IPR014756), Cytochrome b5 (InterPro:IPR001199), Oxidoreductase, molybdopterin binding (InterPro:IPR000572), NADH:cytochrome b5 reductase (CBR) (InterPro:IPR001834), Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Eukaryotic molybdopterin oxidoreductase (InterPro:IPR008335), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), Moybdenum cofactor oxidoreductase, dimerisation (InterPro:IPR005066); BEST Arabidopsis thaliana protein match is: NIA1 (NITRATE REDUCTASE 1); nitrate reductase (TAIR:AT1G77760.1); Has 9728 Blast hits to 9434 proteins in 1378 species: Archae - 73; Bacteria - 4069; Metazoa - 1514; Fungi - 1433; Plants - 785; Viruses - 3; Other Eukaryotes - 1851 (source: NCBI BLink).  protein_id AT1G37130.1p  transcript_id AT1G37130.1  protein_id AT1G37130.1p  transcript_id AT1G37130.1  
At1g37140	chr1:014171754	0.0	C/14171754-14172040,14171343-14171487,14170351-14170527	AT1G37140.2  CDS  gene_syn F28L22.10, F28L22_10, MCT1, mei2 C-Terminal RRM only like 1  gene MCT1  function a member of mei2-like gene family; phylogenetic analysis revealed that it belongs to the fourth clade of mei2-like proteins, with conserved C-terminal RNA recognition motif (RRM) only.  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product MCT1 (mei2 C-Terminal RRM only like 1); RNA binding  note mei2 C-Terminal RRM only like 1 (MCT1); FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: RNA recognition motif 2 (InterPro:IPR007201); BEST Arabidopsis thaliana protein match is: TEL1 (TERMINAL EAR1-LIKE 1); RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT3G26120.1); Has 190 Blast hits to 190 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 19; Plants - 121; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT1G37140.2p  transcript_id AT1G37140.2  protein_id AT1G37140.2p  transcript_id AT1G37140.2  
At1g37140	chr1:014171754	0.0	C/14171754-14172040,14171576-14171668,14171343-14171487,14170351-14170527	AT1G37140.1  CDS  gene_syn F28L22.10, F28L22_10, MCT1, mei2 C-Terminal RRM only like 1  gene MCT1  function a member of mei2-like gene family; phylogenetic analysis revealed that it belongs to the fourth clade of mei2-like proteins, with conserved C-terminal RNA recognition motif (RRM) only.  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product MCT1 (mei2 C-Terminal RRM only like 1); RNA binding  note mei2 C-Terminal RRM only like 1 (MCT1); FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: RNA recognition motif 2 (InterPro:IPR007201); BEST Arabidopsis thaliana protein match is: TEL2 (TERMINAL EAR1-LIKE 2); RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT1G67770.1); Has 245 Blast hits to 245 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 40; Plants - 134; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT1G37140.1p  transcript_id AT1G37140.1  protein_id AT1G37140.1p  transcript_id AT1G37140.1  
At1g37150	chr1:014176827	0.0	C/14176827-14176839,14176683-14176754,14176443-14176591,14176245-14176365,14175996-14176151,14175795-14175840,14175330-14175396,14175198-14175218	AT1G37150.1  CDS  gene_syn F28L22.1, F28L22_1, HCS2, holocarboxylase synthetase 2  gene HCS2  go_process protein modification process|GO:0006464||IEA  go_function catalytic activity|GO:0003824||IEA  go_function biotin-[acetyl-CoA-carboxylase] ligase activity|GO:0004077||IEA  go_process protein modification process|GO:0006464||ISS  go_function catalytic activity|GO:0003824||ISS  product HCS2 (holocarboxylase synthetase 2); biotin-[acetyl-CoA-carboxylase] ligase/ catalytic  note holocarboxylase synthetase 2 (HCS2); FUNCTIONS IN: biotin-[acetyl-CoA-carboxylase] ligase activity, catalytic activity; INVOLVED IN: protein modification process; EXPRESSED IN: pedicel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Biotin/lipoate A/B protein ligase (InterPro:IPR004143), Biotin--acetyl-CoA-carboxylase ligase (InterPro:IPR004408); BEST Arabidopsis thaliana protein match is: HCS1 (HOLOCARBOXYLASE SYNTHASE); biotin-[acetyl-CoA-carboxylase] ligase/ catalytic (TAIR:AT2G25710.2); Has 3856 Blast hits to 3854 proteins in 1195 species: Archae - 155; Bacteria - 2044; Metazoa - 106; Fungi - 88; Plants - 31; Viruses - 0; Other Eukaryotes - 1432 (source: NCBI BLink).  protein_id AT1G37150.1p  transcript_id AT1G37150.1  protein_id AT1G37150.1p  transcript_id AT1G37150.1  
At1g37150	chr1:014176827	0.0	C/14176827-14177098,14176683-14176744,14176443-14176591,14176245-14176365,14175996-14176151,14175795-14175840,14175330-14175396,14175170-14175246,14175029-14175068	AT1G37150.2  CDS  gene_syn F28L22.1, F28L22_1, HCS2, holocarboxylase synthetase 2  gene HCS2  go_process protein modification process|GO:0006464||IEA  go_function catalytic activity|GO:0003824||IEA  go_function biotin-[acetyl-CoA-carboxylase] ligase activity|GO:0004077||IEA  go_process protein modification process|GO:0006464||ISS  go_function catalytic activity|GO:0003824||ISS  product HCS2 (holocarboxylase synthetase 2); biotin-[acetyl-CoA-carboxylase] ligase/ catalytic  note holocarboxylase synthetase 2 (HCS2); FUNCTIONS IN: biotin-[acetyl-CoA-carboxylase] ligase activity, catalytic activity; INVOLVED IN: protein modification process; EXPRESSED IN: pedicel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Biotin protein ligase, C-terminal (InterPro:IPR003142), Biotin/lipoate A/B protein ligase (InterPro:IPR004143), Biotin--acetyl-CoA-carboxylase ligase (InterPro:IPR004408); BEST Arabidopsis thaliana protein match is: HCS1 (HOLOCARBOXYLASE SYNTHASE); biotin-[acetyl-CoA-carboxylase] ligase/ catalytic (TAIR:AT2G25710.2); Has 3918 Blast hits to 3918 proteins in 1213 species: Archae - 157; Bacteria - 2063; Metazoa - 105; Fungi - 88; Plants - 32; Viruses - 0; Other Eukaryotes - 1473 (source: NCBI BLink).  protein_id AT1G37150.2p  transcript_id AT1G37150.2  protein_id AT1G37150.2p  transcript_id AT1G37150.2  
At1g37150	chr1:014176827	0.0	C/14176827-14177098,14176683-14176744,14176443-14176591,14176245-14176365,14175996-14176151,14175795-14175840,14175330-14175396,14175198-14175218	AT1G37150.3  CDS  gene_syn F28L22.1, F28L22_1, HCS2, holocarboxylase synthetase 2  gene HCS2  go_process protein modification process|GO:0006464||IEA  go_function catalytic activity|GO:0003824||IEA  go_function biotin-[acetyl-CoA-carboxylase] ligase activity|GO:0004077||IEA  go_process protein modification process|GO:0006464||ISS  go_function catalytic activity|GO:0003824||ISS  product HCS2 (holocarboxylase synthetase 2); biotin-[acetyl-CoA-carboxylase] ligase/ catalytic  note holocarboxylase synthetase 2 (HCS2); FUNCTIONS IN: biotin-[acetyl-CoA-carboxylase] ligase activity, catalytic activity; INVOLVED IN: protein modification process; EXPRESSED IN: pedicel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Biotin/lipoate A/B protein ligase (InterPro:IPR004143), Biotin--acetyl-CoA-carboxylase ligase (InterPro:IPR004408); BEST Arabidopsis thaliana protein match is: HCS1 (HOLOCARBOXYLASE SYNTHASE); biotin-[acetyl-CoA-carboxylase] ligase/ catalytic (TAIR:AT2G25710.2); Has 3908 Blast hits to 3906 proteins in 1205 species: Archae - 157; Bacteria - 2061; Metazoa - 106; Fungi - 88; Plants - 32; Viruses - 0; Other Eukaryotes - 1464 (source: NCBI BLink).  protein_id AT1G37150.3p  transcript_id AT1G37150.3  protein_id AT1G37150.3p  transcript_id AT1G37150.3  
At1g37150	chr1:014177214	0.0	C/14177214-14177279,14177062-14177100,14176827-14176864,14176683-14176744,14176443-14176591,14176245-14176365,14175996-14176151,14175795-14175840,14175330-14175396,14175170-14175246,14175029-14175068	AT1G37150.4  CDS  gene_syn F28L22.1, F28L22_1, HCS2, holocarboxylase synthetase 2  gene HCS2  go_process protein modification process|GO:0006464||IEA  go_function catalytic activity|GO:0003824||IEA  go_function biotin-[acetyl-CoA-carboxylase] ligase activity|GO:0004077||IEA  go_process protein modification process|GO:0006464||ISS  go_function catalytic activity|GO:0003824||ISS  product HCS2 (holocarboxylase synthetase 2); biotin-[acetyl-CoA-carboxylase] ligase/ catalytic  note holocarboxylase synthetase 2 (HCS2); FUNCTIONS IN: biotin-[acetyl-CoA-carboxylase] ligase activity, catalytic activity; INVOLVED IN: protein modification process; EXPRESSED IN: pedicel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Biotin protein ligase, C-terminal (InterPro:IPR003142), Biotin/lipoate A/B protein ligase (InterPro:IPR004143), Biotin--acetyl-CoA-carboxylase ligase (InterPro:IPR004408); BEST Arabidopsis thaliana protein match is: HCS1 (HOLOCARBOXYLASE SYNTHASE); biotin-[acetyl-CoA-carboxylase] ligase/ catalytic (TAIR:AT2G25710.2); Has 3915 Blast hits to 3915 proteins in 1210 species: Archae - 155; Bacteria - 2059; Metazoa - 105; Fungi - 88; Plants - 32; Viruses - 0; Other Eukaryotes - 1476 (source: NCBI BLink).  protein_id AT1G37150.4p  transcript_id AT1G37150.4  protein_id AT1G37150.4p  transcript_id AT1G37150.4  
At1g37160	chr1:014181396	0.0	C/14181396-14183264	AT1G37160.1  mRNA_TE_gene  pseudo  gene_syn F28L22.9, F28L22_9  note Transposable element gene, gypsy-like retrotransposon family (Athila), similar to putative Athila retroelement ORF1 protein GI:4567296 from (Arabidopsis thaliana)  
At1g37162	chr1:014184749	0.0	C/14184749-14184853	AT1G37162.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G37162.1p  transcript_id AT1G37162.1  protein_id AT1G37162.1p  transcript_id AT1G37162.1  
At1g37170	chr1:014188824	0.0	W/14188824-14190995	AT1G37170.1  mRNA_TE_gene  pseudo  gene_syn F28L22.15, F28L22_15  note Transposable element gene, Mutator-like transposase family, has a 1.1e-84 P-value blast match to O22278 /203-375 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g37180	chr1:014193585	0.0	C/14193585-14194819	AT1G37180.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 6.2e-07 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At1g37190	chr1:014197638	0.0	W/14197638-14200137	AT1G37190.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, contains similarity to hypothetical proteins from (Arabidopsis thaliana)  
At1g37200	chr1:014201054	0.0	C/14201054-14206371	AT1G37200.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.3e-185 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays)  
At1g37210	chr1:014208782	0.0	W/14208782-14211487	AT1G37210.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 7.4e-67 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g37275	chr1:014213199	0.0	W/14213199-14213730	AT1G37275.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30600.1); contains InterPro domain Protein of unknown function DUF730; (InterPro:IPR007989)  
At1g37340	chr1:014218097	0.0	C/14218097-14223712	AT1G37340.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 9.2e-199 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g37405	chr1:014226804	0.0	W/14226804-14232764	AT1G37405.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.0e-229 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g37471	chr1:014234557	0.0	W/14234557-14237169	AT1G37471.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.0e-262 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g37537	chr1:014241087	0.0	W/14241087-14242190	AT1G37537.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.5e-34 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At1g37603	chr1:014243165	0.0	W/14243165-14245015	AT1G37603.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to putative Athila retroelement ORF1 protein GI:4263544 from (Arabidopsis thaliana)  
At1g37669	chr1:014248948	0.0	W/14248948-14251512	AT1G37669.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.0e-258 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g37735	chr1:014257071	0.0	C/14257071-14260655	AT1G37735.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.9e-189 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g37801	chr1:014262831	0.0	W/14262831-14263586	AT1G37801.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 1.9e-24 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota)  
At1g37867	chr1:014266731	0.0	C/14266731-14272193	AT1G37867.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.5e-195 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g37933	chr1:014273365	0.0	C/14273365-14276511	AT1G37933.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to putative retroelement pol polyprotein GI:4309763 from (Arabidopsis thaliana)  
At1g37999	chr1:014278111	0.0	C/14278111-14282034	AT1G37999.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, contains similarity to replication proteins from (Arabidopsis thaliana)  
At1g38065	chr1:014292006	0.0	C/14292006-14292060,14291824-14291930,14291648-14291736,14291371-14291568,14291081-14291285,14290810-14290977,14290564-14290731,14290292-14290482,14289906-14290137	AT1G38065.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G38131.1); Has 434 Blast hits to 423 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 434; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G38065.1p  transcript_id AT1G38065.1  protein_id AT1G38065.1p  transcript_id AT1G38065.1  
At1g38131	chr1:014295670	0.0	C/14295670-14296020,14295492-14295582,14295310-14295386,14295134-14295222,14294857-14295054,14294567-14294771,14294296-14294463,14294050-14294217,14293778-14293968,14293392-14293623	AT1G38131.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G38065.1); Has 435 Blast hits to 424 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 435; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G38131.1p  transcript_id AT1G38131.1  protein_id AT1G38131.1p  transcript_id AT1G38131.1  
At1g38140	chr1:014300842	0.0	W/14300842-14302929	AT1G38140.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 9.2e-38 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At1g38149	chr1:014313049	0.0	W/14313049-14315934	AT1G38149.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.1e-51 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g38158	chr1:014316988	0.0	W/14316988-14319492	AT1G38158.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 7.3e-228 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g38167	chr1:014320220	0.0	W/14320220-14323789	AT1G38167.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.5e-98 P-value blast match to gb|AAL06419.1|AF378075_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At1g38176	chr1:014324216	0.0	W/14324216-14325619	AT1G38176.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to putative retroelement pol polyprotein  
At1g38185	chr1:014334140	0.0	W/14334140-14338177	AT1G38185.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.1e-21 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g38194	chr1:014339343	0.0	W/14339343-14340227	AT1G38194.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to contains similarity to Arabidopsis thaliana hypothetical protein (GB:AC004483)  
At1g38203	chr1:014343493	0.0	W/14343493-14344380	AT1G38203.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.5e-30 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g38212	chr1:014344571	0.0	W/14344571-14347153	AT1G38212.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to see GB:AF077408  
At1g38221	chr1:014350650	0.0	W/14350650-14353298	AT1G38221.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 8.2e-114 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g38230	chr1:014357006	0.0	C/14357006-14361028	AT1G38230.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.7e-60 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g38240	chr1:014368341	0.0	W/14368341-14369630	AT1G38240.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.1e-20 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At1g38250	chr1:014370226	0.0	W/14370226-14372238	AT1G38250.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to putative Athila retroelement ORF1 protein  
At1g38260	chr1:014375706	0.0	C/14375706-14379741	AT1G38260.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 8.5e-114 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g38270	chr1:014386830	0.0	W/14386830-14389799	AT1G38270.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 7.2e-205 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g38280	chr1:014390723	0.0	W/14390723-14392546	AT1G38280.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to transposon protein GI:7267360 from (Arabidopsis thaliana)  
At1g38290	chr1:014396303	0.0	W/14396303-14398681	AT1G38290.1  mRNA_TE_gene  pseudo  gene_syn F2C1.25  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 6.8e-112 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g38300	chr1:014403154	0.0	C/14403154-14406576	AT1G38300.1  mRNA_TE_gene  pseudo  gene_syn F2C1.22  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 5.7e-61 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g38310	chr1:014413975	0.0	W/14413975-14415294	AT1G38310.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.2e-20 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At1g38320	chr1:014415952	0.0	W/14415952-14417511	AT1G38320.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At1g38330	chr1:014421359	0.0	C/14421359-14425394	AT1G38330.1  mRNA_TE_gene  pseudo  gene_syn F2C1.21  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 8.5e-114 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g38340	chr1:014430747	0.0	W/14430747-14432225	AT1G38340.1  mRNA_TE_gene  pseudo  gene_syn F2C1.28, F2C1_28  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.7e-36 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g38350	chr1:014434173	0.0	W/14434173-14436840	AT1G38350.1  mRNA_TE_gene  pseudo  gene_syn F2C1.29  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.8e-278 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g38360	chr1:014437603	0.0	W/14437603-14445999	AT1G38360.1  mRNA_TE_gene  pseudo  gene_syn F2C1.30  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 9.0e-98 P-value blast match to gb|AAL06419.1|AF378075_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At1g38380	chr1:014446400	0.0	W/14446400-14447996	AT1G38380.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G34855.1); similar to hypothetical protein 26.t00034 [Brassica oleracea] (GB:ABD65011.1)  
At1g38390	chr1:014449811	0.0	W/14449811-14450341	AT1G38390.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At1g38400	chr1:014453712	0.0	W/14453712-14456432	AT1G38400.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.0e-215 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g38410	chr1:014457606	0.0	W/14457606-14458805	AT1G38410.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At1g38416	chr1:014462414	0.0	W/14462414-14463247	AT1G38416.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 7.8e-32 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g38423	chr1:014467816	0.0	C/14467816-14471421	AT1G38423.1  mRNA_TE_gene  pseudo  gene_syn F2C1.38  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.7e-57 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g38430	chr1:014478902	0.0	C/14478902-14482448	AT1G38430.1  mRNA_TE_gene  pseudo  gene_syn F2C1.3  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 9.8e-109 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g38440	chr1:014487343	0.0	W/14487343-14488365	AT1G38440.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 6.0e-121 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g38450	chr1:014492062	0.0	W/14492062-14495814	AT1G38450.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 9.8e-50 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g38460	chr1:014501393	0.0	W/14501393-14505229	AT1G38460.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.7e-221 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g38550	chr1:014506540	0.0	W/14506540-14507184	AT1G38550.1  mRNA_TE_gene  pseudo  gene_syn F2C1.4  note Transposable element gene, pseudogene, hypothetical protein  
At1g38630	chr1:014511294	0.0	C/14511294-14511342,14511116-14511184,14510884-14511011	AT1G38630.1  CDS  gene_syn F12G6.12, F12G6_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G38790.1); Has 54 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G38630.1p  transcript_id AT1G38630.1  protein_id AT1G38630.1p  transcript_id AT1G38630.1  
At1g38710	chr1:014538739	0.0	C/14538739-14542790	AT1G38710.1  mRNA_TE_gene  pseudo  gene_syn F12G6.2  note Transposable element gene, gypsy-like retrotransposon family, has a 1.8e-117 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At1g38790	chr1:014544480	0.0	C/14544480-14544528,14544303-14544371,14544125-14544193,14543598-14543720,14543453-14543521,14543277-14543350	AT1G38790.1  CDS  gene_syn F12G6.18, F12G6_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G08986.1); Has 31 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G38790.1p  transcript_id AT1G38790.1  protein_id AT1G38790.1p  transcript_id AT1G38790.1  
At1g38870	chr1:014581871	0.0	C/14581871-14584396	AT1G38870.1  mRNA_TE_gene  pseudo  gene_syn F12G6.10  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.7e-282 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g38950	chr1:014587852	0.0	W/14587852-14588000,14588172-14588259,14588354-14588419	AT1G38950.1  CDS  gene_syn F12G6.9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G38950.1p  transcript_id AT1G38950.1  protein_id AT1G38950.1p  transcript_id AT1G38950.1  
At1g39030	chr1:014588591	0.0	C/14588591-14590038	AT1G39030.1  mRNA_TE_gene  pseudo  gene_syn F12G6.17, F12G6_17  note Transposable element gene, gypsy-like retrotransposon family, has a 7.6e-38 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At1g39110	chr1:014591055	0.0	C/14591055-14593550	AT1G39110.1  mRNA_TE_gene  pseudo  gene_syn F12G6.8  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 2.5e-25 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At1g39190	chr1:014594407	0.0	C/14594407-14598190	AT1G39190.1  mRNA_TE_gene  pseudo  gene_syn F12G6.7  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 6.1e-139 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At1g39270	chr1:014598690	0.0	C/14598690-14604275	AT1G39270.1  mRNA_TE_gene  pseudo  gene_syn F12G6.6  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 6.7e-105 P-value blast match to gb|AAL06422.1|AF378081_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At1g39350	chr1:014607833	0.0	C/14607833-14608653	AT1G39350.1  mRNA_TE_gene  pseudo  gene_syn F12G6.5  note Transposable element gene  
At1g39430	chr1:014656853	0.0	C/14656853-14657326	AT1G39430.1  mRNA_TE_gene  pseudo  gene_syn F12G6.16, F12G6_16  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G43100.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At1g39510	chr1:014662282	0.0	C/14662282-14664117	AT1G39510.1  mRNA_TE_gene  pseudo  gene_syn T28N5.8  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.3e-36 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g39511	chr1:014664799	0.0	C/14664799-14667705	AT1G39511.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.4e-219 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g39513	chr1:014715462	0.0	W/14715462-14717297	AT1G39513.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.3e-36 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g39515	chr1:014747211	0.0	C/14747211-14749046	AT1G39515.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.3e-36 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g39590	chr1:014807800	0.0	W/14807800-14813997	AT1G39590.1  mRNA_TE_gene  pseudo  gene_syn T28N5.1  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.4e-256 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g39670	chr1:014817510	0.0	W/14817510-14819595	AT1G39670.1  mRNA_TE_gene  pseudo  gene_syn T28N5.2, T28N5_2  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 1.7e-56 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At1g39750	chr1:014825236	0.0	C/14825236-14825643	AT1G39750.1  mRNA_TE_gene  pseudo  gene_syn T28N5.7, T28N5_7  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.8e-35 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g39830	chr1:014840744	0.0	C/14840744-14846755	AT1G39830.1  mRNA_TE_gene  pseudo  gene_syn T28N5.6  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.2e-56 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g39910	chr1:014849635	0.0	W/14849635-14852390	AT1G39910.1  mRNA_TE_gene  pseudo  gene_syn T28N5.3  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 0. P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g39990	chr1:014853296	0.0	W/14853296-14855175	AT1G39990.1  mRNA_TE_gene  pseudo  gene_syn T28N5.4, T28N5_4  note Transposable element gene, gypsy-like retrotransposon family (Athila)  
At1g40070	chr1:014857705	0.0	C/14857705-14859910	AT1G40070.1  mRNA_TE_gene  pseudo  gene_syn T28N5.5  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 7.4e-78 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g40069	chr1:014860340	0.0	W/14860340-14860514	AT1G40069.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G30520; unknown protein  
At1g40071	chr1:014864166	0.0	W/14864166-14864927	AT1G40071.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.9e-10 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g40072	chr1:014867447	0.0	C/14867447-14869477	AT1G40072.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At1g40073	chr1:014870410	0.0	C/14870410-14873234	AT1G40073.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 0. P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g40074	chr1:014876079	0.0	W/14876079-14882030	AT1G40074.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.9e-56 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g40075	chr1:014892436	0.0	C/14892436-14896886	AT1G40075.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 4.1e-155 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays)  
At1g40077	chr1:014899838	0.0	C/14899838-14906596	AT1G40077.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.5e-256 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g40078	chr1:014912940	0.0	W/14912940-14915024	AT1G40078.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At1g40079	chr1:014915764	0.0	W/14915764-14916351	AT1G40079.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At1g40080	chr1:014917168	0.0	C/14917168-14917632	AT1G40080.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana] (TAIR:AT1G42630.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878)  
At1g40081	chr1:014918653	0.0	W/14918653-14919588	AT1G40081.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, contains similarity to hypothetical proteins from Arabidopsis.  
At1g40083	chr1:014922922	0.0	C/14922922-14923055,14922423-14922810	AT1G40083.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT1G40083.1p  transcript_id AT1G40083.1  protein_id AT1G40083.1p  transcript_id AT1G40083.1  
At1g40084	chr1:014924035	0.0	W/14924035-14924676	AT1G40084.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, contains similarity to hypothetical proteins from (Arabidopsis thaliana)  
At1g40085	chr1:014925852	0.0	W/14925852-14926970	AT1G40085.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.3e-132 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g40087	chr1:015001745	0.0	C/15001745-15001868,15001356-15001594,15000766-15000969,15000589-15000681,15000418-15000519,15000047-15000343,14999865-14999954,14999762-14999785	AT1G40087.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transposase, Ptta/En/Spm, plant (InterPro:IPR004252); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G30200.1); Has 103 Blast hits to 103 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G40087.1p  transcript_id AT1G40087.1  protein_id AT1G40087.1p  transcript_id AT1G40087.1  
At1g40089	chr1:015003026	0.0	C/15003026-15004333	AT1G40089.1  pseudogenic_transcript  pseudo  note pseudogene, putative fructose-2,6-bisphosphatase, similar to fructose-2,6-bisphosphatase GI:13096098 from (Arabidopsis thaliana); blastp match of 75% identity and 5.7e-42 P-value to GP|14149116|dbj|BAB55655.1||AB061797 fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase {Bruguiera gymnorrhiza}  
At1g40091	chr1:015005207	0.0	C/15005207-15008662	AT1G40091.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 1.3e-177 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At1g40093	chr1:015038153	0.0	C/15038153-15041098	AT1G40093.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 5.9e-258 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g40095	chr1:015044573	0.0	C/15044573-15050812	AT1G40095.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.4e-256 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g40097	chr1:015053799	0.0	W/15053799-15056507	AT1G40097.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 4.1e-81 P-value blast match to Q9S9W4 /247-408 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g40099	chr1:015057069	0.0	W/15057069-15058112	AT1G40099.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to hypothetical proteins from (Arabidopsis thaliana)  
At1g40101	chr1:015063543	0.0	C/15063543-15076496	AT1G40101.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 5.6e-152 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g40103	chr1:015078534	0.0	C/15078534-15081356	AT1G40103.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to hypothetical proteins from (Arabidopsis thaliana)  
At1g40104	chr1:015081952	0.0	W/15081952-15082000,15082083-15082178,15082261-15082356,15082439-15082540,15082613-15082708,15082818-15082886,15082996-15083049,15083116-15083238,15083348-15083416,15083526-15083594,15083650-15083772,15083855-15083950,15084056-15084124,15084207-15084308,15084586-15084654,15084737-15084832,15084915-15085010,15085120-15085188,15085294-15085362,15085445-15085546,15085646-15085714,15085820-15085893	AT1G40104.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G08986.1).  protein_id AT1G40104.1p  transcript_id AT1G40104.1  protein_id AT1G40104.1p  transcript_id AT1G40104.1  
At1g40105	chr1:015139933	0.0	W/15139933-15142292	AT1G40105.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 5.1e-40 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At1g40107	chr1:015151216	0.0	W/15151216-15154824	AT1G40107.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 0. P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At1g40109	chr1:015155045	0.0	W/15155045-15158202	AT1G40109.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp1/En/Spm), has a 0. P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)  
At1g40113	chr1:015160610	0.0	W/15160610-15166681	AT1G40113.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 2.1e-155 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At1g40115	chr1:015179141	0.0	W/15179141-15179593	AT1G40115.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G09900.1)  
At1g40117	chr1:015180908	0.0	W/15180908-15186517	AT1G40117.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.8e-281 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g40119	chr1:015187719	0.0	W/15187719-15189614	AT1G40119.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, member of hypothetical protein common family  
At1g40121	chr1:015190972	0.0	W/15190972-15191991	AT1G40121.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to hypothetical proteins from (Arabidopsis thaliana)  
At1g40123	chr1:015209959	0.0	W/15209959-15213729	AT1G40123.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 2.0e-142 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At1g40125	chr1:015214280	0.0	W/15214280-15215365	AT1G40125.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30670.1)  
At1g40127	chr1:015215966	0.0	C/15215966-15221264	AT1G40127.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 2.2e-59 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At1g40129	chr1:015240553	0.0	W/15240553-15240612,15241703-15241901,15241989-15242471,15242688-15242999,15243057-15243385,15243659-15243797,15243855-15244036	AT1G40129.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G07350.1); Has 74 Blast hits to 60 proteins in 20 species: Archae - 0; Bacteria - 6; Metazoa - 5; Fungi - 4; Plants - 44; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G40129.1p  transcript_id AT1G40129.1  protein_id AT1G40129.1p  transcript_id AT1G40129.1  
At1g40131	chr1:015281236	0.0	W/15281236-15285925	AT1G40131.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 8.9e-118 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At1g40133	chr1:015286440	0.0	C/15286440-15288755	AT1G40133.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G06603.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G34590.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G60930.1); similar to hypothetical protein 27.t00126 [Brassica oleracea] (GB:ABD65062.1)  
At1g40135	chr1:015292281	0.0	W/15292281-15296006	AT1G40135.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 2.0e-40 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At1g40137	chr1:015300585	0.0	W/15300585-15304478	AT1G40137.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 6.0e-165 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays)  
At1g40139	chr1:015304581	0.0	C/15304581-15306764	AT1G40139.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At1g40141	chr1:015312019	0.0	W/15312019-15313131	AT1G40141.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.9e-98 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g40143	chr1:015313132	0.0	C/15313132-15316914	AT1G40143.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.5e-179 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At1g40136	chr1:015378555	0.0	W/15378555-15384011	AT1G40136.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 2.7e-116 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At1g40130	chr1:015384548	0.0	C/15384548-15387010	AT1G40130.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At1g40124	chr1:015390384	0.0	W/15390384-15392123	AT1G40124.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 4.4e-26 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)  
At1g40118	chr1:015392514	0.0	W/15392514-15394091	AT1G40118.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 7.6e-43 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At1g40112	chr1:015398667	0.0	W/15398667-15402377	AT1G40112.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.1e-158 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays)  
At1g40106	chr1:015402420	0.0	C/15402420-15404846	AT1G40106.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At1g40100	chr1:015410101	0.0	W/15410101-15411111	AT1G40100.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.4e-77 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g40150	chr1:015412720	0.0	W/15412720-15414517	AT1G40150.1  mRNA_TE_gene  pseudo  gene_syn F9D18.1, F9D18_1  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.7e-38 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g40230	chr1:015414895	0.0	W/15414895-15415806	AT1G40230.1  mRNA_TE_gene  pseudo  gene_syn F9D18.23, F9D18_23  note Transposable element gene  
At1g40310	chr1:015415948	0.0	W/15415948-15417870	AT1G40310.1  mRNA_TE_gene  pseudo  gene_syn F9D18.3, F9D18_3  note Transposable element gene, hypothetical protein  
At1g40076	chr1:015422187	0.0	W/15422187-15422672	AT1G40076.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to contains similarity to Arabidopsis thaliana hypothetical protein (GB:AC004483)  
At1g40390	chr1:015434391	0.0	C/15434391-15434674,15433210-15433928,15432576-15432853	AT1G40390.1  CDS  gene_syn F9D18.22, F9D18_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43760.1); Has 480 Blast hits to 479 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 480; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G40390.1p  transcript_id AT1G40390.1  protein_id AT1G40390.1p  transcript_id AT1G40390.1  
At1g40470	chr1:015438170	0.0	W/15438170-15441167	AT1G40470.1  mRNA_TE_gene  pseudo  gene_syn F9D18.17  note Transposable element gene, gypsy-like retrotransposon family, has a 1.9e-102 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At1g40630	chr1:015448706	0.0	C/15448706-15452414	AT1G40630.1  mRNA_TE_gene  pseudo  gene_syn F9D18.21  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 8.7e-230 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g41115	chr1:015457545	0.0	W/15457545-15460358	AT1G41115.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.2e-282 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g41600	chr1:015464485	0.0	W/15464485-15467298	AT1G41600.1  mRNA_TE_gene  pseudo  gene_syn AT1G40871, F9M8.8  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.8e-281 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g41630	chr1:015471424	0.0	W/15471424-15474237	AT1G41630.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.1e-280 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g41650	chr1:015476465	0.0	W/15476465-15477001	AT1G41650.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05636.1)  
At1g41660	chr1:015478365	0.0	W/15478365-15481172	AT1G41660.1  mRNA_TE_gene  pseudo  gene_syn F9M8.3  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.3e-281 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g41680	chr1:015482852	0.0	W/15482852-15484057	AT1G41680.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At1g41690	chr1:015485350	0.0	W/15485350-15486558	AT1G41690.1  mRNA_TE_gene  pseudo  gene_syn F9M8.5  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 6.5e-165 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g41700	chr1:015488097	0.0	C/15488097-15491832	AT1G41700.1  mRNA_TE_gene  pseudo  gene_syn F9M8.23  note Transposable element gene, gypsy-like retrotransposon family (Athila), pseudogene, has a 8.4e-127 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At1g41723	chr1:015491953	0.0	W/15491953-15492534	AT1G41723.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At1g41710	chr1:015493688	0.0	W/15493688-15499345	AT1G41710.1  mRNA_TE_gene  pseudo  gene_syn F9M8.13  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.5e-247 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g41720	chr1:015500528	0.0	W/15500528-15502597	AT1G41720.1  mRNA_TE_gene  pseudo  gene_syn F9M8.14  note Transposable element gene, pseudogene, hypothetical protein  
At1g41726	chr1:015503360	0.0	W/15503360-15503986	AT1G41726.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At1g41730	chr1:015504918	0.0	C/15504918-15507474	AT1G41730.1  mRNA_TE_gene  pseudo  gene_syn F9M8.22  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.7e-253 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g41740	chr1:015508897	0.0	C/15508897-15512095	AT1G41740.1  mRNA_TE_gene  pseudo  gene_syn F9M8.21  note Transposable element gene, gypsy-like retrotransposon family, has a 2.8e-119 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus)  
At1g41743	chr1:015514268	0.0	C/15514268-15517653	AT1G41743.1  mRNA_TE_gene  pseudo  gene_syn F9M8.20  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 9.9e-264 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g41746	chr1:015518698	0.0	C/15518698-15521174	AT1G41746.1  mRNA_TE_gene  pseudo  gene_syn F9M8.19  note Transposable element gene, gypsy-like retrotransposon family, has a 1.3e-09 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At1g41750	chr1:015522011	0.0	C/15522011-15522436	AT1G41750.1  mRNA_TE_gene  pseudo  gene_syn F9M8.6  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G32903.1)  
At1g41755	chr1:015526431	0.0	W/15526431-15530110	AT1G41755.1  mRNA_TE_gene  pseudo  gene_syn AT1G41519, F9M8.15  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 0. P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At1g41760	chr1:015530420	0.0	C/15530420-15530963	AT1G41760.1  mRNA_TE_gene  pseudo  gene_syn F9M8.18, F9M8_18  note Transposable element gene, gypsy-like retrotransposon family, has a 7.1e-11 P-value blast match to GB:226407 retrotransposon del1-46 (Gypsy_Ty3-element) (Lilium henryi)  
At1g41770	chr1:015537221	0.0	W/15537221-15537532	AT1G41770.1  mRNA_TE_gene  pseudo  gene_syn F9M8.10  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G33064.1)  
At1g41775	chr1:015539176	0.0	C/15539176-15544377	AT1G41775.1  mRNA_TE_gene  pseudo  gene_syn F9M8.1  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.2e-260 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g41790	chr1:015547317	0.0	W/15547317-15550186	AT1G41790.1  mRNA_TE_gene  pseudo  gene_syn F9M8.16  note Transposable element gene, gypsy-like retrotransposon family, has a 0.00017 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At1g41795	chr1:015554517	0.0	C/15554517-15557528	AT1G41795.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.6e-264 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g41797	chr1:015560039	0.0	C/15560039-15563509	AT1G41797.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.2e-119 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g41798	chr1:015567003	0.0	C/15567003-15567812	AT1G41798.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.3e-88 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g41803	chr1:015570514	0.0	W/15570514-15578278	AT1G41803.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 2.1e-256 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At1g41810	chr1:015579817	0.0	C/15579817-15580557	AT1G41810.1  mRNA_TE_gene  pseudo  gene_syn T4I21.3, T4I21_3  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G34590.1)  
At1g41820	chr1:015585050	0.0	C/15585050-15585143,15583600-15584123,15583440-15583540,15582710-15582998,15582423-15582620	AT1G41820.1  CDS  gene_syn T4I21.4, T4I21_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 39 Blast hits to 39 proteins in 17 species: Archae - 0; Bacteria - 5; Metazoa - 7; Fungi - 1; Plants - 3; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G41820.1p  transcript_id AT1G41820.1  protein_id AT1G41820.1p  transcript_id AT1G41820.1  
At1g41825	chr1:015590929	0.0	W/15590929-15594141	AT1G41825.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.9e-98 P-value blast match to gb|AAL06422.1|AF378081_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At1g41827	chr1:015596075	0.0	W/15596075-15596434	AT1G41827.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 2.2e-11 P-value blast match to GB:CAB39733 rotease, reverse transcriptase, ribonuclease H, integrase (Gypsy_Ty3-element) (Drosophila buzzatii)  
At1g41830	chr1:015607659	0.0	C/15607659-15607802,15607225-15607334,15605500-15605770,15605256-15605355,15604814-15605159,15604368-15604733,15604198-15604276,15603892-15604104	AT1G41830.1  CDS  gene_syn F5A13.5, F5A13_5, SKS6, SKU5 SIMILAR 6, SKU5-SIMILAR 6  gene SKS6  go_component cell wall|GO:0005618|14595688|IDA  go_component cell wall|GO:0005618|15593128|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function pectinesterase activity|GO:0030599||ISS  product SKS6 (SKU5-SIMILAR 6); pectinesterase  note SKU5-SIMILAR 6 (SKS6); FUNCTIONS IN: pectinesterase activity; LOCATED IN: apoplast, cell wall, membrane, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: sks5 (SKU5 Similar 5); copper ion binding / oxidoreductase (TAIR:AT1G76160.1); Has 3557 Blast hits to 3501 proteins in 591 species: Archae - 8; Bacteria - 883; Metazoa - 275; Fungi - 1434; Plants - 835; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT1G41830.1p  transcript_id AT1G41830.1  protein_id AT1G41830.1p  transcript_id AT1G41830.1  
At1g41835	chr1:015610591	0.0	C/15610591-15615111	AT1G41835.1  mRNA_TE_gene  pseudo  gene_syn F5A13.8  note Transposable element gene, copia-like retrotransposon family, has a 1.5e-96 P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element)  
At1g41840	chr1:015617322	0.0	C/15617322-15622910	AT1G41840.1  mRNA_TE_gene  pseudo  gene_syn F5A13.7  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.2e-23 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At1g41850	chr1:015626402	0.0	W/15626402-15630507	AT1G41850.1  mRNA_TE_gene  pseudo  gene_syn F5A13.12  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.3e-29 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At1g41855	chr1:015637605	0.0	W/15637605-15639738	AT1G41855.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05640.1)  
At1g41860	chr1:015640156	0.0	W/15640156-15640794	AT1G41860.1  mRNA_TE_gene  pseudo  gene_syn F5A13.6, F5A13_6  note Transposable element gene, contains InterPro domain Retrotransposon gag protein; (InterPro:IPR005162)  
At1g41870	chr1:015647491	0.0	W/15647491-15649051	AT1G41870.1  mRNA_TE_gene  pseudo  gene_syn F5A13.13, F5A13_13  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42120.1)  
At1g41875	chr1:015650172	0.0	W/15650172-15650405	AT1G41875.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G41875.1p  transcript_id AT1G41875.1  protein_id AT1G41875.1p  transcript_id AT1G41875.1  
At1g41880	chr1:015652399	0.0	C/15652399-15652427,15652252-15652287,15651714-15651942,15651585-15651626	AT1G41880.1  CDS  gene_syn F5A13.4, F5A13_4  go_component membrane|GO:0016020|17432890|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L35a (RPL35aB)  note 60S ribosomal protein L35a (RPL35aB); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, ribosome, membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L35Ae (InterPro:IPR001780), Ribosomal protein L35Ae, conserved site (InterPro:IPR018266); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L35a (RPL35aD) (TAIR:AT3G55750.1); Has 541 Blast hits to 541 proteins in 186 species: Archae - 21; Bacteria - 0; Metazoa - 228; Fungi - 97; Plants - 93; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).  protein_id AT1G41880.1p  transcript_id AT1G41880.1  protein_id AT1G41880.1p  transcript_id AT1G41880.1  
At1g41890	chr1:015652635	0.0	C/15652635-15656463	AT1G41890.1  pseudogenic_transcript  pseudo  gene_syn F5A13.11  note pseudogene, proline transporter 2, similar to GB:CAA65053 from (Arabidopsis thaliana); blastp match of 57% identity and 6.6e-110 P-value to GP|7415521|dbj|BAA93437.1||AB022783 amino acid permease {Oryza sativa}  
At1g41893	chr1:015657492	0.0	W/15657492-15660261	AT1G41893.1  mRNA_TE_gene  pseudo  gene_syn F5A13.14  note Transposable element gene, copia-like retrotransposon family, has a 1.7e-104 P-value blast match to GB:AAD12998 pol polyprotein (Ty1_Copia-element) (Zea mays)  
At1g41896	chr1:015665040	0.0	W/15665040-15669938	AT1G41896.1  mRNA_TE_gene  pseudo  gene_syn F5A13.15  note Transposable element gene, gypsy-like retrotransposon family, has a 6.8e-192 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays)  
At1g41900	chr1:015670938	0.0	C/15670938-15673358	AT1G41900.1  mRNA_TE_gene  pseudo  gene_syn F5A13.10, F5A13_10  function pseudogene of myosin heavy chain-related  note Transposable element gene  
At1g41910	chr1:015677553	0.0	W/15677553-15680073	AT1G41910.1  mRNA_TE_gene  pseudo  gene_syn F5A13.2, F5A13_2  note Transposable element gene, CACTA-like transposase family (Tnp1/En/Spm), has a 2.1e-130 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)  
At1g41920	chr1:015684474	0.0	C/15684474-15684487,15683895-15684051,15682853-15682908,15682483-15682547,15680978-15682176	AT1G41920.1  CDS  gene_syn F5A13.9, F5A13_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: hAT dimerisation domain-containing protein (TAIR:AT1G19260.1); Has 280 Blast hits to 262 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 158; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G41920.1p  transcript_id AT1G41920.1  protein_id AT1G41920.1p  transcript_id AT1G41920.1  
At1g41930	chr1:015685411	0.0	W/15685411-15695693	AT1G41930.1  mRNA_TE_gene  pseudo  gene_syn F5A13.1, F5A13_1  note Transposable element gene, CACTA-like transposase family (Tnp1/En/Spm), has a 3.8e-118 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)  
At1g42045	chr1:015698374	0.0	W/15698374-15699976	AT1G42045.1  mRNA_TE_gene  pseudo  gene_syn F19C17.2  note Transposable element gene, gypsy-like retrotransposon family, has a 8.1e-123 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus)  
At1g42003	chr1:015703232	0.0	C/15703232-15703863	AT1G42003.1  mRNA_TE_gene  pseudo  gene_syn F16M11.2  note Transposable element gene, pseudogene, similar to gag-pol polyprotein, blastp match of 50% identity and 8.2e-42 P-value to GP|22296822|gb|AAM94350.1||AY129008 gag-pol polyprotein {Zea mays}  
At1g42040	chr1:015705082	0.0	C/15705082-15705651	AT1G42040.1  mRNA_TE_gene  pseudo  gene_syn F16M11.4  note Transposable element gene, pseudogene, hypothetical protein  
At1g42050	chr1:015707077	0.0	C/15707077-15710285	AT1G42050.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At1g42060	chr1:015710485	0.0	C/15710485-15713211	AT1G42060.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 7.3e-276 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g42070	chr1:015714408	0.0	C/15714408-15715882	AT1G42070.1  mRNA_TE_gene  pseudo  gene_syn F19C17.33  note Transposable element gene, gypsy-like retrotransposon family, has a 3.2e-08 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At1g42080	chr1:015716714	0.0	C/15716714-15717169	AT1G42080.1  CDS  gene_syn F19C17.17, F19C17_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43500.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G42080.1p  transcript_id AT1G42080.1  protein_id AT1G42080.1p  transcript_id AT1G42080.1  
At1g42090	chr1:015720083	0.0	C/15720083-15720696	AT1G42090.1  pseudogenic_transcript  pseudo  note pseudogene, similar to betaine/proline transporter, similar to proline transporter 1 GI:1769901 from (Arabidopsis thaliana); blastp match of 62% identity and 2.4e-33 P-value to GP|21069016|dbj|BAB93108.1||AB075902 betaine/proline transporter {Avicennia marina}  
At1g42100	chr1:015721695	0.0	W/15721695-15724485	AT1G42100.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 6.8e-138 P-value blast match to GB:AAD12998 pol polyprotein (Ty1_Copia-element) (Zea mays)  
At1g42110	chr1:015725298	0.0	W/15725298-15727434	AT1G42110.1  mRNA_TE_gene  pseudo  gene_syn F19C17.35, F19C17_35  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 3.5e-136 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At1g42120	chr1:015730615	0.0	C/15730615-15730686	AT1G42120.1  tRNA  gene_syn 68114.TRNA-MET-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Met (anticodon: CAT)  transcript_id AT1G42120.1  
At1g42130	chr1:015733169	0.0	W/15733169-15735656	AT1G42130.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 1.6e-236 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At1g42140	chr1:015736521	0.0	C/15736521-15741101	AT1G42140.1  mRNA_TE_gene  pseudo  gene_syn F19C17.31  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.0e-66 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g42150	chr1:015742399	0.0	W/15742399-15746446	AT1G42150.1  mRNA_TE_gene  pseudo  gene_syn F19C17.11, F19C17_11  note Transposable element gene, CACTA-like transposase family (Tnp1/En/Spm), has a 5.3e-161 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)  
At1g42160	chr1:015751580	0.0	W/15751580-15753070	AT1G42160.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At1g42170	chr1:015755674	0.0	W/15755674-15757335	AT1G42170.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 4.7e-127 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus)  
At1g42180	chr1:015758772	0.0	C/15758772-15759280	AT1G42180.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to Putative retroelement, blastp match of 43% identity and 4.5e-33 P-value to GP|13992688|gb|AAK51582.1|AC022352_18|AC022352 Putative retroelement {Oryza sativa}  
At1g42190	chr1:015761082	0.0	W/15761082-15761276	AT1G42190.1  CDS  gene_syn F19C17.40, F19C17_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 20 Blast hits to 20 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G42190.1p  transcript_id AT1G42190.1  protein_id AT1G42190.1p  transcript_id AT1G42190.1  
At1g42200	chr1:015761928	0.0	C/15761928-15763310	AT1G42200.1  mRNA_TE_gene  pseudo  gene_syn F19C17.6, F19C17_6  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 2.3e-27 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At1g42210	chr1:015765947	0.0	C/15765947-15766943	AT1G42210.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 6.3e-57 P-value blast match to At1g36190.1/92-340 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At1g42220	chr1:015768328	0.0	C/15768328-15769506	AT1G42220.1  mRNA_TE_gene  pseudo  gene_syn F19C17.5, F19C17_5  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 3.7e-14 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At1g42230	chr1:015770771	0.0	W/15770771-15771103	AT1G42230.1  mRNA_TE_gene  pseudo  gene_syn F19C17.48  note Transposable element gene, pseudogene, hypothetical protein  
At1g42240	chr1:015773499	0.0	W/15773499-15775778	AT1G42240.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At1g42250	chr1:015776845	0.0	W/15776845-15777526	AT1G42250.1  mRNA_TE_gene  pseudo  gene_syn F19C17.42, F19C17_42  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05087.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At1g42260	chr1:015778352	0.0	W/15778352-15779505	AT1G42260.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At1g42270	chr1:015780470	0.0	W/15780470-15781736	AT1G42270.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At1g42280	chr1:015784117	0.0	W/15784117-15784486	AT1G42280.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to putative helicase, similar to putative helicase GI:4585936 from (Arabidopsis thaliana); blastp match of 62% identity and 8.0e-14 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)}  
At1g42290	chr1:015786432	0.0	W/15786432-15789561	AT1G42290.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to putative helicase, similar to putative helicase GI:4585936 from (Arabidopsis thaliana); blastp match of 33% identity and 5.4e-143 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)}  
At1g42300	chr1:015790727	0.0	C/15790727-15791778	AT1G42300.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At1g42310	chr1:015797909	0.0	C/15797909-15799506	AT1G42310.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At1g42320	chr1:015800929	0.0	W/15800929-15805502	AT1G42320.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 4.9e-261 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At1g42350	chr1:015813844	0.0	C/15813844-15821323	AT1G42350.1  mRNA_TE_gene  pseudo  gene_syn F19C17.1  note Transposable element gene, copia-like retrotransposon family, has a 1.1e-102 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At1g42360	chr1:015824726	0.0	C/15824726-15826576	AT1G42360.1  mRNA_TE_gene  pseudo  gene_syn F7F22.18, F7F22_18  note Transposable element gene, pseudogene, hypothetical protein  
At1g42365	chr1:015827696	0.0	C/15827696-15833426	AT1G42365.1  mRNA_TE_gene  pseudo  gene_syn F7F22.17  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 9.0e-234 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g42367	chr1:015834635	0.0	C/15834635-15835087	AT1G42367.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30700.1)  
At1g42370	chr1:015836929	0.0	C/15836929-15838788	AT1G42370.1  mRNA_TE_gene  pseudo  gene_syn F7F22.16, F7F22_16  note Transposable element gene, gypsy-like retrotransposon family (Athila)  
At1g42375	chr1:015839908	0.0	C/15839908-15845642	AT1G42375.1  mRNA_TE_gene  pseudo  gene_syn F7F22.15, F7F22_15  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.3e-236 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g42377	chr1:015849233	0.0	C/15849233-15851353	AT1G42377.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At1g42380	chr1:015852693	0.0	C/15852693-15854979	AT1G42380.1  mRNA_TE_gene  pseudo  gene_syn F7F22.12, F7F22_12  note Transposable element gene, copia-like retrotransposon family, has a 7.0e-31 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At1g42385	chr1:015855845	0.0	C/15855845-15856162	AT1G42385.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At1g42390	chr1:015857748	0.0	W/15857748-15860849	AT1G42390.1  mRNA_TE_gene  pseudo  gene_syn F7F22.11  note Transposable element gene, Mutator-like transposase family, has a 8.3e-62 P-value blast match to Q9SHM9 /139-265 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g42393	chr1:015861617	0.0	C/15861617-15862273	AT1G42393.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G03979.1)  
At1g42396	chr1:015862858	0.0	C/15862858-15863802	AT1G42396.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At1g42400	chr1:015864606	0.0	C/15864606-15865541	AT1G42400.1  mRNA_TE_gene  pseudo  gene_syn F7F22.10, F7F22_10  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35090.1); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At1g42410	chr1:015869107	0.0	W/15869107-15871453	AT1G42410.1  mRNA_TE_gene  pseudo  gene_syn F7F22.9, F7F22_9  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 1.0e-124 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At1g42420	chr1:015873298	0.0	C/15873298-15878184	AT1G42420.1  mRNA_TE_gene  pseudo  gene_syn F7F22.8, F7F22_8  note Transposable element gene, pseudogene, hypothetical protein  
At1g42430	chr1:015891512	0.0	W/15891512-15891786,15891862-15891953,15892257-15892450,15892682-15892721,15892957-15893038,15893144-15893221,15893337-15893462,15893626-15893747,15893865-15893904,15894006-15894080,15894166-15894322	AT1G42430.1  CDS  gene_syn F7F22.5, F7F22_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55760.2); Has 112 Blast hits to 86 proteins in 28 species: Archae - 0; Bacteria - 8; Metazoa - 15; Fungi - 6; Plants - 48; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT1G42430.1p  transcript_id AT1G42430.1  protein_id AT1G42430.1p  transcript_id AT1G42430.1  
At1g42440	chr1:015899849	0.0	C/15899849-15899939,15899619-15899773,15899417-15899548,15899288-15899338,15899055-15899195,15898833-15898955,15898654-15898731,15898454-15898546,15898251-15898373,15897914-15897997,15897719-15897817,15897394-15897585,15897199-15897274,15896921-15897024,15896572-15896834,15896405-15896491,15896091-15896321,15895880-15895958,15895726-15895789,15895528-15895643	AT1G42440.1  CDS  gene_syn F7F22.4, F7F22_4  go_component nucleus|GO:0005634||IEA  go_process ribosome biogenesis|GO:0042254||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948), Protein of unknown function DUF663 (InterPro:IPR007034); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06720.1); Has 2447 Blast hits to 1812 proteins in 205 species: Archae - 0; Bacteria - 115; Metazoa - 903; Fungi - 423; Plants - 100; Viruses - 53; Other Eukaryotes - 853 (source: NCBI BLink).  protein_id AT1G42440.1p  transcript_id AT1G42440.1  protein_id AT1G42440.1p  transcript_id AT1G42440.1  
At1g42450	chr1:015909367	0.0	W/15909367-15912626	AT1G42450.1  mRNA_TE_gene  pseudo  gene_syn F7F22.3, F7F22_3  note Transposable element gene, Mutator-like transposase family, has a 4.3e-96 P-value blast match to Q9SHN7 /450-633 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g42460	chr1:015913520	0.0	C/15913520-15917485	AT1G42460.1  mRNA_TE_gene  pseudo  gene_syn F7F22.2, F7F22_2  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G07240.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At1g42470	chr1:015926987	0.0	W/15926987-15927118,15927216-15927323,15927415-15927531,15927615-15927765,15927851-15928098,15928186-15928368,15928457-15928530,15928606-15928723,15928817-15928900,15929045-15929140,15929226-15929327,15929423-15929494,15929632-15929727,15929814-15929921,15930005-15930118,15930233-15930316,15930424-15930552,15930674-15930872,15930951-15931094,15931194-15931237,15931351-15931434,15931534-15931602,15931678-15931754,15931831-15931900,15932101-15932250,15932999-15933064,15933159-15933303,15933408-15933472,15933567-15933632,15933742-15933835,15933937-15933973,15934078-15934135,15934239-15934349,15934433-15934495,15934695-15934761,15934852-15934920,15935004-15935128	AT1G42470.1  CDS  gene_syn F7F22.1, F7F22_1  go_component plasma membrane|GO:0005886|17317660|IDA  go_function hedgehog receptor activity|GO:0008158||IEA  go_component membrane|GO:0016020||ISS  go_function hedgehog receptor activity|GO:0008158||ISS  product patched family protein  note patched family protein; FUNCTIONS IN: hedgehog receptor activity; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Niemann-Pick C type protein (InterPro:IPR004765), Patched (InterPro:IPR003392), Sterol-sensing 5TM box (InterPro:IPR000731); BEST Arabidopsis thaliana protein match is: hedgehog receptor (TAIR:AT4G38350.1); Has 2160 Blast hits to 1740 proteins in 256 species: Archae - 34; Bacteria - 145; Metazoa - 1431; Fungi - 133; Plants - 61; Viruses - 0; Other Eukaryotes - 356 (source: NCBI BLink).  protein_id AT1G42470.1p  transcript_id AT1G42470.1  protein_id AT1G42470.1p  transcript_id AT1G42470.1  
At1g42480	chr1:015936297	0.0	W/15936297-15936392,15937019-15937045,15937170-15937249,15937621-15937693,15937803-15937857,15938228-15938279,15938365-15938389,15938471-15938562,15938644-15938692	AT1G42480.1  CDS  gene_syn T8D8.4, T8D8_4  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 136 Blast hits to 136 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G42480.1p  transcript_id AT1G42480.1  protein_id AT1G42480.1p  transcript_id AT1G42480.1  
At1g42480	chr1:015936297	0.0	W/15936297-15936392,15937019-15937045,15937170-15937249,15937621-15937693,15937803-15937964	AT1G42480.2  CDS  gene_syn T8D8.4, T8D8_4  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 104 Blast hits to 104 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G42480.2p  transcript_id AT1G42480.2  protein_id AT1G42480.2p  transcript_id AT1G42480.2  
At1g42480	chr1:015936297	0.0	W/15936297-15936392,15937019-15937045,15937219-15937249,15937451-15937499,15937621-15937693,15937803-15937857,15938228-15938279,15938365-15938389,15938471-15938562,15938644-15938692	AT1G42480.3  CDS  gene_syn T8D8.4, T8D8_4  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages.  protein_id AT1G42480.3p  transcript_id AT1G42480.3  protein_id AT1G42480.3p  transcript_id AT1G42480.3  
At1g42490	chr1:015945877	0.0	C/15945877-15946985	AT1G42490.1  pseudogenic_transcript  pseudo  gene_syn T8D8.10  note pseudogene, glutamate dehydrogenase (fragment), blastp match of 78% identity and 1.6e-94 P-value to GP|15004984|dbj|BAB62170.1||AB066298 glutamate dehydrogenase {Brassica napus}  
At1g42500	chr1:015951375	0.0	C/15951375-15953706	AT1G42500.1  mRNA_TE_gene  pseudo  gene_syn T8D8.9, T8D8_9  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 1.8e-101 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At1g42510	chr1:015954731	0.0	C/15954731-15958558	AT1G42510.1  mRNA_TE_gene  pseudo  gene_syn T8D8.8  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 4.8e-141 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays)  
At1g42515	chr1:015958627	0.0	W/15958627-15959343	AT1G42515.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G45570.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD65034.1)  
At1g42520	chr1:015962140	0.0	W/15962140-15964392	AT1G42520.1  mRNA_TE_gene  pseudo  gene_syn T8D8.6  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 5.3e-69 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At1g42525	chr1:015966381	0.0	W/15966381-15966590,15966674-15966719,15966849-15967057,15967549-15967732,15967834-15967904,15967980-15968037,15968124-15968239	AT1G42525.1  CDS  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_component cellular_component|GO:0005575||ND  product cysteine-type peptidase  note cysteine-type peptidase; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: Ulp1 protease family protein (TAIR:AT1G37020.1).  protein_id AT1G42525.1p  transcript_id AT1G42525.1  protein_id AT1G42525.1p  transcript_id AT1G42525.1  
At1g42525	chr1:015966381	0.0	W/15966381-15966590,15966674-15966719,15966870-15967057,15967549-15967732,15967834-15967904,15967980-15968037,15968124-15968239	AT1G42525.2  CDS  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_component cellular_component|GO:0005575||ND  product cysteine-type peptidase  note cysteine-type peptidase; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: Ulp1 protease family protein (TAIR:AT1G37020.1).  protein_id AT1G42525.2p  transcript_id AT1G42525.2  protein_id AT1G42525.2p  transcript_id AT1G42525.2  
At1g42530	chr1:015968806	0.0	C/15968806-15971112	AT1G42530.1  mRNA_TE_gene  pseudo  gene_syn T8D8.7  note Transposable element gene, Mutator-like transposase family, has a 4.8e-23 P-value blast match to Q9S9L1 /206-367 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g42540	chr1:015973489	0.0	W/15973489-15973744,15973836-15975184,15975262-15975539,15975632-15975663,15975745-15976151,15976224-15976703	AT1G42540.1  CDS  gene_syn ATGLR3.3, GLR3.3, GLUTAMATE RECEPTOR 3.3, T8D8.1, T8D8_1  gene GLR3.3  function member of Putative ligand-gated ion channel subunit family  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process cellular calcium ion homeostasis|GO:0006874|11379626|NAS  go_process response to light stimulus|GO:0009416|11379626|NAS  go_function intracellular ligand-gated ion channel activity|GO:0005217||ISS  product ATGLR3.3; intracellular ligand-gated ion channel  note ATGLR3.3; FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), GPCR, family 3, gamma-aminobutyric acid receptor, type B (InterPro:IPR002455), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: ATGLR3.6 (GLUTAMATE RECEPTOR 3.6); intracellular ligand-gated ion channel (TAIR:AT3G51480.1); Has 5166 Blast hits to 5061 proteins in 363 species: Archae - 16; Bacteria - 521; Metazoa - 3775; Fungi - 0; Plants - 314; Viruses - 2; Other Eukaryotes - 538 (source: NCBI BLink).  protein_id AT1G42540.1p  transcript_id AT1G42540.1  protein_id AT1G42540.1p  transcript_id AT1G42540.1  
At1g42550	chr1:015977131	0.0	W/15977131-15978816,15978889-15979734	AT1G42550.1  CDS  gene_syn PLASTID MOVEMENT IMPAIRED1, PMI1, T8D8.2, T8D8_2  gene PMI1  function Encodes a plant-specific protein of unknown function that appears to be conserved among angiosperms.  go_component plasma membrane|GO:0005886|14506206|IDA  go_process chloroplast relocation|GO:0009902|16113226|IMP  go_process actin cytoskeleton organization|GO:0030036|16113226|IMP  go_function molecular_function|GO:0003674||ND  product PMI1 (PLASTID MOVEMENT IMPAIRED1)  note PLASTID MOVEMENT IMPAIRED1 (PMI1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: chloroplast relocation, actin cytoskeleton organization; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G20610.1); Has 1614 Blast hits to 1044 proteins in 146 species: Archae - 0; Bacteria - 90; Metazoa - 652; Fungi - 122; Plants - 96; Viruses - 95; Other Eukaryotes - 559 (source: NCBI BLink).  protein_id AT1G42550.1p  transcript_id AT1G42550.1  protein_id AT1G42550.1p  transcript_id AT1G42550.1  
At1g42560	chr1:015983188	0.0	C/15983188-15983328,15983038-15983095,15982328-15982557,15982138-15982254,15981997-15982054,15981811-15981899,15981656-15981730,15981491-15981579,15981362-15981411,15981234-15981274,15980967-15981140,15980718-15980753,15980551-15980618,15980404-15980464,15980209-15980304	AT1G42560.1  CDS  gene_syn ARABIDOPSIS THALIANA MILDEW RESISTANCE LOCUS O 9, ATMLO9, MILDEW RESISTANCE LOCUS O 9, MLO9, T8D8.5, T8D8_5  gene MLO9  function A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO9 belongs to the clade III, with AtMLO5, AtMLO7, AtMLO8, and AtMLO10. The gene is expressed during early seedling growth, in cotyledon vascular system, in flowers (with strong expression in anthers) in siliques and fruit abscission zone; not expressed in roots, or in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).  go_component integral to membrane|GO:0016021||IEA  go_process cell death|GO:0008219||IEA  go_component plasma membrane|GO:0005886||ISS  go_process defense response|GO:0006952||ISS  go_process cell death|GO:0008219||ISS  go_function calmodulin binding|GO:0005516||ISS  product MLO9 (MILDEW RESISTANCE LOCUS O 9); calmodulin binding  note MILDEW RESISTANCE LOCUS O 9 (MLO9); FUNCTIONS IN: calmodulin binding; INVOLVED IN: cell death, defense response; LOCATED IN: integral to membrane, plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326); BEST Arabidopsis thaliana protein match is: MLO5 (MILDEW RESISTANCE LOCUS O 5); calmodulin binding (TAIR:AT2G33670.1); Has 295 Blast hits to 291 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 291; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G42560.1p  transcript_id AT1G42560.1  protein_id AT1G42560.1p  transcript_id AT1G42560.1  
At1g42570	chr1:015988784	0.0	W/15988784-15990469	AT1G42570.1  pseudogenic_transcript  pseudo  gene_syn F8D11.3, F8D11_3  note pseudogene, similar to P0529E05.9, blastp match of 56% identity and 1.2e-110 P-value to GP|18461196|dbj|BAB84393.1||AP003279 P0529E05.9 {Oryza sativa (japonica cultivar-group)}  
At1g42580	chr1:015991696	0.0	C/15991696-15992175	AT1G42580.1  mRNA_TE_gene  pseudo  gene_syn F8D11.4, F8D11_4  note Transposable element gene, similar to DNA binding [Arabidopsis thaliana] (TAIR:AT3G47680.1)  
At1g42590	chr1:015997017	0.0	W/15997017-16000380	AT1G42590.1  mRNA_TE_gene  pseudo  gene_syn F8D11.17  note Transposable element gene, pseudogene, hypothetical protein  
At1g42595	chr1:016000967	0.0	C/16000967-16003487	AT1G42595.1  mRNA_TE_gene  pseudo  gene_syn F8D11.23  note Transposable element gene, Mutator-like transposase family, has a 1.7e-75 P-value blast match to Q9S9L1 /206-367 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g42600	chr1:016006216	0.0	W/16006216-16008693	AT1G42600.1  mRNA_TE_gene  pseudo  gene_syn F8D11.18  note Transposable element gene, Mutator-like transposase family, has a 1.7e-54 P-value blast match to Q9S9W4 /247-408 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g42602	chr1:016011820	0.0	W/16011820-16012506	AT1G42602.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At1g42605	chr1:016014497	0.0	C/16014497-16018871	AT1G42605.1  mRNA_TE_gene  pseudo  gene_syn F8D11.22  note Transposable element gene, gypsy-like retrotransposon family, has a 5.9e-318 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At1g42610	chr1:016020907	0.0	W/16020907-16021371	AT1G42610.1  mRNA_TE_gene  pseudo  gene_syn F8D11.11, F8D11_11  note Transposable element gene, pseudogene, hypothetical protein  
At1g42620	chr1:016023256	0.0	C/16023256-16024291	AT1G42620.1  mRNA_TE_gene  pseudo  gene_syn F8D11.21  note Transposable element gene, pseudogene, replication protein A1  
At1g42630	chr1:016025298	0.0	W/16025298-16025762	AT1G42630.1  mRNA_TE_gene  pseudo  gene_syn F8D11.5, F8D11_5  note Transposable element gene, similar to nucleic acid binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G40080.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878)  
At1g42635	chr1:016027028	0.0	C/16027028-16027570	AT1G42635.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At1g42650	chr1:016028191	0.0	C/16028191-16034022	AT1G42650.1  mRNA_TE_gene  pseudo  gene_syn F8D11.14, F8D11_14  note Transposable element gene, pseudogene, hypothetical protein  
At1g42655	chr1:016035845	0.0	W/16035845-16036867	AT1G42655.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to Putative retroelement, blastp match of 45% identity and 3.2e-41 P-value to GP|21671994|gb|AAM74356.1|AC115686_23|AC115686 Putative retroelement {Oryza sativa (japonica cultivar-group)}  
At1g42680	chr1:016041656	0.0	W/16041656-16041715,16041863-16041952,16042205-16042387,16042495-16042558,16042765-16042880	AT1G42680.1  CDS  gene_syn F8D11.8, F8D11_8  go_component myosin complex|GO:0016459||IEA  go_function motor activity|GO:0003774||IEA  go_function ATP binding|GO:0005524||IEA  go_process biological_process|GO:0008150||ND  product myosin-related  note myosin-related; FUNCTIONS IN: motor activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: myosin complex; CONTAINS InterPro DOMAIN/s: Myosin head, motor region (InterPro:IPR001609); BEST Arabidopsis thaliana protein match is: ATM1 (ARABIDOPSIS THALIANA MYOSIN 1); motor (TAIR:AT3G19960.2); Has 3927 Blast hits to 3921 proteins in 352 species: Archae - 0; Bacteria - 0; Metazoa - 2799; Fungi - 367; Plants - 229; Viruses - 0; Other Eukaryotes - 532 (source: NCBI BLink).  protein_id AT1G42680.1p  transcript_id AT1G42680.1  protein_id AT1G42680.1p  transcript_id AT1G42680.1  
At1g42690	chr1:016043755	0.0	W/16043755-16045041	AT1G42690.1  mRNA_TE_gene  pseudo  gene_syn F8D11.12, F8D11_12  note Transposable element gene, pseudogene, similar to B, blastp match of 48% identity and 4.4e-72 P-value to GP|22830897|dbj|BAC15771.1||AB087616 B {Oryza sativa (japonica cultivar-group)}  
At1g42695	chr1:016046270	0.0	W/16046270-16049993	AT1G42695.1  mRNA_TE_gene  pseudo  gene_syn F8D11.19  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 6.1e-74 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g42699	chr1:016051795	0.0	W/16051795-16051935	AT1G42699.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G42699.1p  transcript_id AT1G42699.1  protein_id AT1G42699.1p  transcript_id AT1G42699.1  
At1g42703	chr1:016053779	0.0	W/16053779-16055767	AT1G42703.1  mRNA_TE_gene  pseudo  gene_syn F8D11.20  note Transposable element gene, copia-like retrotransposon family, has a 1.5e-08 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)  
At1g42697	chr1:016056325	0.0	C/16056325-16058625	AT1G42697.1  mRNA_TE_gene  pseudo  gene_syn F8D11.9, F8D11_9  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 1.5e-82 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At1g42698	chr1:016059193	0.0	W/16059193-16060839	AT1G42698.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 7.4e-54 P-value blast match to GB:BAA11674 ORF(AA 1-1338) (Ty1_Copia-element) (Nicotiana tabacum)  
At1g42700	chr1:016066931	0.0	W/16066931-16066990,16067108-16067439,16067535-16067592	AT1G42700.1  CDS  gene_syn F8D11.10  go_component nucleus|GO:0005634|14617066|IDA  go_process response to cold|GO:0009409|14617066|IEP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cold; LOCATED IN: nucleus; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G40087.1); Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G42700.1p  transcript_id AT1G42700.1  protein_id AT1G42700.1p  transcript_id AT1G42700.1  
At1g42705	chr1:016071341	0.0	W/16071341-16073512	AT1G42705.1  mRNA_TE_gene  pseudo  gene_syn F8D11.15  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 2.3e-66 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At1g42710	chr1:016078516	0.0	C/16078516-16078567,16078091-16078396,16077734-16077925,16077592-16077662	AT1G42710.1  CDS  gene_syn F8D11.16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: protein dimerization (TAIR:AT2G06541.2); Has 111 Blast hits to 103 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 24; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G42710.1p  transcript_id AT1G42710.1  protein_id AT1G42710.1p  transcript_id AT1G42710.1  
At1g42718	chr1:016081065	0.0	W/16081065-16084787	AT1G42718.1  mRNA_TE_gene  pseudo  gene_syn F8D11.24  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 5.4e-130 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At1g42727	chr1:016085799	0.0	W/16085799-16088273	AT1G42727.1  mRNA_TE_gene  pseudo  gene_syn F13A11.9  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 2.4e-35 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At1g42736	chr1:016090061	0.0	W/16090061-16090544	AT1G42736.1  mRNA_TE_gene  pseudo  gene_syn F13A11.10  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.6e-20 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g42740	chr1:016092685	0.0	C/16092685-16093839	AT1G42740.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42120.1)  
At1g42745	chr1:016097270	0.0	C/16097270-16099306	AT1G42745.1  mRNA_TE_gene  pseudo  gene_syn F13A11.18  note Transposable element gene, pseudogene, hypothetical protein  
At1g42780	chr1:016100290	0.0	C/16100290-16102965	AT1G42780.1  mRNA_TE_gene  pseudo  gene_syn F13A11.17  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 8.2e-217 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g42816	chr1:016104714	0.0	C/16104714-16105401	AT1G42816.1  mRNA_TE_gene  pseudo  gene_syn F13A11.16  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 5.0e-27 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g42852	chr1:016107024	0.0	C/16107024-16109446	AT1G42852.1  mRNA_TE_gene  pseudo  gene_syn F13A11.15  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 2.4e-64 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At1g42888	chr1:016110313	0.0	W/16110313-16113421	AT1G42888.1  mRNA_TE_gene  pseudo  gene_syn F13A11.11  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.6e-24 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g42924	chr1:016118446	0.0	W/16118446-16121623	AT1G42924.1  mRNA_TE_gene  pseudo  gene_syn F13A11.12  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At1g42960	chr1:016125863	0.0	W/16125863-16125929,16126227-16126347,16126521-16126617,16126771-16126857,16126946-16127080	AT1G42960.1  CDS  gene_syn F13A11.2, F13A11_2  function expressed protein localized to the inner membrane of the chloroplast.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_component chloroplast inner membrane|GO:0009706|12177442|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: in 7 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16660.1); Has 72 Blast hits to 72 proteins in 26 species: Archae - 0; Bacteria - 34; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G42960.1p  transcript_id AT1G42960.1  protein_id AT1G42960.1p  transcript_id AT1G42960.1  
At1g42970	chr1:016127552	0.0	W/16127552-16127653,16127744-16127839,16127919-16128083,16128153-16128320,16128412-16128572,16128657-16128718,16128795-16128844,16128947-16129353,16129452-16129584	AT1G42970.1  CDS  gene_syn F13A11.3, F13A11_3, GAPB, GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT  gene GAPB  function Encodes chloroplast localized glyceraldehyde-3-phosphate dehydrogenase.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component chloroplast|GO:0009507|1398114|ISS  go_component stromule|GO:0010319|16923014|IDA  go_process glycolysis|GO:0006096||ISS  go_process response to cold|GO:0009409|16923014|IEP  go_process response to light stimulus|GO:0009416|15533878|IEP  go_process response to sucrose stimulus|GO:0009744|15533878|IEP  go_process reductive pentose-phosphate cycle|GO:0019253|15533878|NAS  go_function glyceraldehyde-3-phosphate dehydrogenase (NADP+) activity|GO:0008886|1398114|ISS  go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943||ISS  product GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase (NADP+)/ glyceraldehyde-3-phosphate dehydrogenase  note GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT (GAPB); FUNCTIONS IN: glyceraldehyde-3-phosphate dehydrogenase (NADP+) activity, glyceraldehyde-3-phosphate dehydrogenase activity; INVOLVED IN: in 6 processes; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase (InterPro:IPR000173), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), NAD(P)-binding (InterPro:IPR016040), Protein of unknown function CP12 (InterPro:IPR003823); BEST Arabidopsis thaliana protein match is: GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2); NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase (TAIR:AT1G12900.1); Has 17370 Blast hits to 17364 proteins in 3918 species: Archae - 21; Bacteria - 6619; Metazoa - 1324; Fungi - 1903; Plants - 2517; Viruses - 0; Other Eukaryotes - 4986 (source: NCBI BLink).  protein_id AT1G42970.1p  transcript_id AT1G42970.1  protein_id AT1G42970.1p  transcript_id AT1G42970.1  
At1g42980	chr1:016133344	0.0	W/16133344-16133346,16133436-16133492,16133627-16133725,16133811-16133855,16133936-16134067,16134361-16134424,16134528-16134604,16134715-16134762,16134847-16134963,16135035-16135103,16135184-16135241,16135326-16135456	AT1G42980.1  CDS  gene_syn F13A11.4, F13A11_4  go_component endomembrane system|GO:0012505||IEA  go_function actin binding|GO:0003779|12417149|ISS  go_function actin binding|GO:0003779|15256004|ISS  product formin homology 2 domain-containing protein / FH2 domain-containing protein  note formin homology 2 domain-containing protein / FH2 domain-containing protein; FUNCTIONS IN: actin binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: actin binding (TAIR:AT1G31810.1); Has 684 Blast hits to 680 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 491; Fungi - 6; Plants - 132; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT1G42980.1p  transcript_id AT1G42980.1  protein_id AT1G42980.1p  transcript_id AT1G42980.1  
At1g42990	chr1:016137023	0.0	C/16137023-16137459,16136062-16136512	AT1G42990.1  CDS  gene_syn ATBZIP60, BASIC REGION/LEUCINE ZIPPER MOTIF 60, BZIP60, F13A11.5, F13A11_5  gene ATBZIP60  function AtbZIP60 consists of a bZIP DNA binding domain followed by a putative transmembrane domain. GFP fusions containing the first 260 amino acids (AtbZIP60deltaC) are nuclear-localized. AtbZIP60 is upregulated by the addition of tunicamycin (ER stress response inductor), DTT (inhibitor of disulfide bond formation) and azetin-2-carboxylate (proline analog perturbing protein structure). Upon ER stress the protein is proteolyzed and the soluble part is translocalized into the nucleus. AtbZIP60deltaC can activate the promoters of the ER chaperones BiP1, BiP2 and BiP3 and CNX1 and CNX2 via binding to the ER stress response element (ERSE) and the plant unfolded protein response element(P-UPRE). It can also activate its own transcription.  go_component nucleus|GO:0005634|15781873|IDA  go_component nucleus|GO:0005634|19017746|IDA  go_component endoplasmic reticulum membrane|GO:0005789|19017746|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to chitin|GO:0010200|17722694|IEP  go_process endoplasmic reticulum unfolded protein response|GO:0030968|15781873|IEP  go_process endoplasmic reticulum unfolded protein response|GO:0030968|19017746|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700|15781873|IDA  go_function transcription factor activity|GO:0003700||ISS  product ATBZIP60 (BASIC REGION/LEUCINE ZIPPER MOTIF 60); DNA binding / transcription factor  note BASIC REGION/LEUCINE ZIPPER MOTIF 60 (ATBZIP60); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: endoplasmic reticulum unfolded protein response, response to chitin, regulation of transcription, DNA-dependent; LOCATED IN: nucleus, endoplasmic reticulum membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); Has 725 Blast hits to 725 proteins in 112 species: Archae - 0; Bacteria - 26; Metazoa - 295; Fungi - 46; Plants - 315; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT1G42990.1p  transcript_id AT1G42990.1  protein_id AT1G42990.1p  transcript_id AT1G42990.1  
At1g43000	chr1:016140816	0.0	W/16140816-16141001,16141106-16141321,16141407-16141655	AT1G43000.1  CDS  gene_syn F13A11.6, F13A11_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function binding|GO:0005488||ISS  product zinc-binding family protein  note zinc-binding family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, LP.12 twelve leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734); BEST Arabidopsis thaliana protein match is: zinc-binding family protein (TAIR:AT1G76590.1); Has 191 Blast hits to 191 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 191; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G43000.1p  transcript_id AT1G43000.1  protein_id AT1G43000.1p  transcript_id AT1G43000.1  
At1g43005	chr1:016151095	0.0	W/16151095-16151115,16151201-16151294,16151372-16151613,16151774-16151816,16151963-16152240	AT1G43005.1  CDS  gene_syn F13A11.20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated type 3 (InterPro:IPR013187); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G61060.1).  protein_id AT1G43005.1p  transcript_id AT1G43005.1  protein_id AT1G43005.1p  transcript_id AT1G43005.1  
At1g43010	chr1:016153609	0.0	W/16153609-16153875,16153962-16154468	AT1G43010.1  CDS  gene_syn F13A11.14, F13A11_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G28020.1); Has 284 Blast hits to 271 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 282; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G43010.1p  transcript_id AT1G43010.1  protein_id AT1G43010.1p  transcript_id AT1G43010.1  
At1g43020	chr1:016155417	0.0	W/16155417-16155493,16155584-16155617,16155699-16155758,16155857-16156069,16156158-16156420,16156505-16156604,16156695-16156751,16156934-16157020,16157246-16157374,16157456-16157773	AT1G43020.1  CDS  gene_syn F13A11.7, F13A11_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, hypocotyl, root; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21060.1); Has 311 Blast hits to 300 proteins in 45 species: Archae - 0; Bacteria - 26; Metazoa - 28; Fungi - 0; Plants - 246; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G43020.1p  transcript_id AT1G43020.1  protein_id AT1G43020.1p  transcript_id AT1G43020.1  
At1g43020	chr1:016155417	0.0	W/16155417-16155493,16155584-16155617,16155699-16155758,16155857-16156069,16156158-16156420,16156505-16156604,16156695-16156751,16156934-16157020,16157246-16157374,16157461-16157496	AT1G43020.3  CDS  gene_syn F13A11.7, F13A11_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, hypocotyl, root; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21060.1); Has 25 Blast hits to 25 proteins in 10 species: Archae - 0; Bacteria - 4; Metazoa - 7; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G43020.3p  transcript_id AT1G43020.3  protein_id AT1G43020.3p  transcript_id AT1G43020.3  
At1g43020	chr1:016155417	0.0	W/16155417-16155493,16155584-16155617,16155699-16155758,16155857-16156069,16156158-16156420,16156505-16156604,16156695-16156803,16156934-16156944	AT1G43020.4  CDS  gene_syn F13A11.7, F13A11_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, hypocotyl, root; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21060.1); Has 228 Blast hits to 218 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 214; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G43020.4p  transcript_id AT1G43020.4  protein_id AT1G43020.4p  transcript_id AT1G43020.4  
At1g43020	chr1:016155417	0.0	W/16155417-16155493,16155584-16155617,16155699-16155758,16155857-16156069,16156158-16156420,16156505-16156604,16156695-16156901	AT1G43020.2  CDS  gene_syn F13A11.7, F13A11_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, hypocotyl, root; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21060.1); Has 230 Blast hits to 220 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 216; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G43020.2p  transcript_id AT1G43020.2  protein_id AT1G43020.2p  transcript_id AT1G43020.2  
At1g43030	chr1:016177091	0.0	W/16177091-16181460	AT1G43030.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 7.1e-109 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At1g43040	chr1:016184209	0.0	W/16184209-16184523	AT1G43040.1  CDS  gene_syn F2H10.1, F2H10_1  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive protein, putative  note auxin-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT5G42410.1); Has 240 Blast hits to 240 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 240; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G43040.1p  transcript_id AT1G43040.1  protein_id AT1G43040.1p  transcript_id AT1G43040.1  
At1g43050	chr1:016185838	0.0	C/16185838-16187658	AT1G43050.1  pseudogenic_transcript  pseudo  gene_syn F2H10.13  note pseudogene, putative polygalacturonase, blastp match of 52% identity and 9.5e-65 P-value to SP|P35339|PGLT_MAIZE Exopolygalacturonase precursor (EC 3.2.1.67) (ExoPG) (Pectinase) (Galacturan 1,4-alpha-galacturonidase). (Maize) {Zea mays}  
At1g43060	chr1:016189210	0.0	W/16189210-16203832	AT1G43060.1  mRNA_TE_gene  pseudo  gene_syn F2H10.6  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.8e-196 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g43070	chr1:016208691	0.0	W/16208691-16209749	AT1G43070.1  mRNA_TE_gene  pseudo  gene_syn F2H10.7  note Transposable element gene, gypsy-like retrotransposon family, has a 6.7e-18 P-value blast match to aF14G16 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)  
At1g43080	chr1:016215685	0.0	C/16215685-16215828,16215058-16215369,16214321-16214845,16213995-16214228	AT1G43080.1  CDS  gene_syn F2H10.12, F2H10_12  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT1G43090.1); Has 2378 Blast hits to 2369 proteins in 296 species: Archae - 2; Bacteria - 437; Metazoa - 8; Fungi - 977; Plants - 883; Viruses - 2; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT1G43080.1p  transcript_id AT1G43080.1  protein_id AT1G43080.1p  transcript_id AT1G43080.1  
At1g43090	chr1:016219007	0.0	C/16219007-16219150,16218380-16218691,16217643-16218167,16217197-16217550	AT1G43090.1  CDS  gene_syn F2H10.11, F2H10_11  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT1G43100.1); Has 2372 Blast hits to 2363 proteins in 297 species: Archae - 2; Bacteria - 435; Metazoa - 8; Fungi - 975; Plants - 879; Viruses - 2; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT1G43090.1p  transcript_id AT1G43090.1  protein_id AT1G43090.1p  transcript_id AT1G43090.1  
At1g43100	chr1:016222330	0.0	C/16222330-16222473,16221703-16222014,16220965-16221489,16220519-16220872	AT1G43100.1  CDS  gene_syn F2H10.10, F2H10_10  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT1G43090.1); Has 2376 Blast hits to 2367 proteins in 297 species: Archae - 2; Bacteria - 438; Metazoa - 8; Fungi - 973; Plants - 881; Viruses - 2; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT1G43100.1p  transcript_id AT1G43100.1  protein_id AT1G43100.1p  transcript_id AT1G43100.1  
At1g43110	chr1:016223981	0.0	C/16223981-16225810	AT1G43110.1  pseudogenic_transcript  pseudo  note pseudogene, putative polygalacturonase, blastp match of 52% identity and 7.3e-73 P-value to GP|4826572|emb|CAB42886.1||AJ238848 polygalacturonase {Phleum pratense}  
At1g43120	chr1:016227318	0.0	C/16227318-16227779	AT1G43120.1  pseudogenic_transcript  pseudo  note pseudogene, putative polygalacturonase, blastp match of 35% identity and 7.8e-14 P-value to GP|1247377|emb|CAA01911.1||A28056 B2 protein allergen {Cynodon dactylon}  
At1g43130	chr1:016231042	0.0	C/16231042-16231158,16230175-16230227,16229977-16230086,16229456-16229623,16229073-16229170,16228863-16228989,16228661-16228773	AT1G43130.1  CDS  gene_syn F1I21.3, F1I21_3, LCV2, LIKE COV 2  gene LCV2  go_component cellular_component|GO:0005575||ND  go_process stem vascular tissue pattern formation|GO:0010222|12668628|ISS  go_function molecular_function|GO:0003674||ND  product LCV2 (LIKE COV 2)  note LIKE COV 2 (LCV2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: stem vascular tissue pattern formation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF502 (InterPro:IPR007462); BEST Arabidopsis thaliana protein match is: COV1 (CONTINUOUS VASCULAR RING) (TAIR:AT2G20120.1); Has 1946 Blast hits to 1946 proteins in 369 species: Archae - 4; Bacteria - 692; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 1166 (source: NCBI BLink).  protein_id AT1G43130.1p  transcript_id AT1G43130.1  protein_id AT1G43130.1p  transcript_id AT1G43130.1  
At1g43140	chr1:016232785	0.0	W/16232785-16232792,16232912-16233061,16233131-16233230,16233305-16233538,16233618-16233899,16233988-16234077,16234314-16234768,16234863-16234914,16235055-16235216,16235302-16235664,16235745-16235912,16236008-16236109	AT1G43140.1  CDS  gene_syn F1I21.19, F1I21_19  go_component endomembrane system|GO:0012505||IEA  go_component cullin-RING ubiquitin ligase complex|GO:0031461||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin protein ligase binding|GO:0031625||IEA  product ubiquitin protein ligase binding  note ubiquitin protein ligase binding; FUNCTIONS IN: ubiquitin protein ligase binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system, cullin-RING ubiquitin ligase complex; EXPRESSED IN: flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Cullin homology (InterPro:IPR016158), Cullin, N-terminal region (InterPro:IPR001373), Cullin repeat-like (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: CUL2 (CULLIN 2); ubiquitin protein ligase binding (TAIR:AT1G02980.1).  protein_id AT1G43140.1p  transcript_id AT1G43140.1  protein_id AT1G43140.1p  transcript_id AT1G43140.1  
At1g43145	chr1:016238525	0.0	W/16238525-16238542,16238622-16238741,16239080-16240015	AT1G43145.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT1G43145.1p  transcript_id AT1G43145.1  protein_id AT1G43145.1p  transcript_id AT1G43145.1  
At1g43150	chr1:016240477	0.0	W/16240477-16244557	AT1G43150.1  mRNA_TE_gene  pseudo  gene_syn F1I21.2  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 5.3e-25 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At1g43160	chr1:016263989	0.0	W/16263989-16264121,16264218-16264663	AT1G43160.1  CDS  gene_syn F1I21.18, F1I21_18, RAP2.6, related to AP2 6  gene RAP2.6  function encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family (RAP2.6). The protein contains one AP2 domain. There are 7 members in this subfamily.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to wounding|GO:0009611|17675405|IEP  go_function DNA binding|GO:0003677|9192694|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9192694|TAS  go_function transcription factor activity|GO:0003700||ISS  product RAP2.6 (related to AP2 6); DNA binding / transcription factor  note related to AP2 6 (RAP2.6); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to wounding, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: leaf apex, flower, root, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT5G50080.1); Has 4005 Blast hits to 3766 proteins in 201 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 3993; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G43160.1p  transcript_id AT1G43160.1  protein_id AT1G43160.1p  transcript_id AT1G43160.1  
At1g43170	chr1:016266992	0.0	W/16266992-16267076,16267263-16267373,16267466-16267770,16267859-16268268,16268373-16268631	AT1G43170.1  CDS  gene_syn ARABIDOPSIS RIBOSOMAL PROTEIN 1, ARP1, F1I21.1, F1I21_1, RPL3A, emb2207, embryo defective 2207  gene ARP1  function Encodes a cytoplasmic ribosomal protein.  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_component cytosolic large ribosomal subunit|GO:0022625|2227432|TAS  go_process translation|GO:0006412||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function structural constituent of ribosome|GO:0003735||ISS  product ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1); structural constituent of ribosome  note ARABIDOPSIS RIBOSOMAL PROTEIN 1 (ARP1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: embryonic development ending in seed dormancy, translation; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L3 (InterPro:IPR000597), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: RPL3B (R-PROTEIN L3 B); structural constituent of ribosome (TAIR:AT1G61580.1); Has 1560 Blast hits to 1550 proteins in 465 species: Archae - 230; Bacteria - 341; Metazoa - 357; Fungi - 109; Plants - 150; Viruses - 1; Other Eukaryotes - 372 (source: NCBI BLink).  protein_id AT1G43170.1p  transcript_id AT1G43170.1  protein_id AT1G43170.1p  transcript_id AT1G43170.1  
At1g43170	chr1:016266992	0.0	W/16266992-16267076,16267263-16267373,16267466-16267770,16267859-16268268,16268373-16268631	AT1G43170.2  CDS  gene_syn ARABIDOPSIS RIBOSOMAL PROTEIN 1, ARP1, F1I21.1, F1I21_1, RPL3A, emb2207, embryo defective 2207  gene ARP1  function Encodes a cytoplasmic ribosomal protein.  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_component cytosolic large ribosomal subunit|GO:0022625|2227432|TAS  go_process translation|GO:0006412||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function structural constituent of ribosome|GO:0003735||ISS  product ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1); structural constituent of ribosome  note ARABIDOPSIS RIBOSOMAL PROTEIN 1 (ARP1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: embryonic development ending in seed dormancy, translation; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L3 (InterPro:IPR000597), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: RPL3B (R-PROTEIN L3 B); structural constituent of ribosome (TAIR:AT1G61580.1); Has 1560 Blast hits to 1550 proteins in 465 species: Archae - 230; Bacteria - 341; Metazoa - 357; Fungi - 109; Plants - 150; Viruses - 1; Other Eukaryotes - 372 (source: NCBI BLink).  protein_id AT1G43170.2p  transcript_id AT1G43170.2  protein_id AT1G43170.2p  transcript_id AT1G43170.2  
At1g43170	chr1:016266992	0.0	W/16266992-16267076,16267263-16267373,16267466-16267770,16267859-16268268,16268373-16268631	AT1G43170.3  CDS  gene_syn ARABIDOPSIS RIBOSOMAL PROTEIN 1, ARP1, F1I21.1, F1I21_1, RPL3A, emb2207, embryo defective 2207  gene ARP1  function Encodes a cytoplasmic ribosomal protein.  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_component cytosolic large ribosomal subunit|GO:0022625|2227432|TAS  go_process translation|GO:0006412||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function structural constituent of ribosome|GO:0003735||ISS  product ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1); structural constituent of ribosome  note ARABIDOPSIS RIBOSOMAL PROTEIN 1 (ARP1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: embryonic development ending in seed dormancy, translation; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L3 (InterPro:IPR000597), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: RPL3B (R-PROTEIN L3 B); structural constituent of ribosome (TAIR:AT1G61580.1); Has 1560 Blast hits to 1550 proteins in 465 species: Archae - 230; Bacteria - 341; Metazoa - 357; Fungi - 109; Plants - 150; Viruses - 1; Other Eukaryotes - 372 (source: NCBI BLink).  protein_id AT1G43170.3p  transcript_id AT1G43170.3  protein_id AT1G43170.3p  transcript_id AT1G43170.3  
At1g43170	chr1:016267519	0.0	W/16267519-16267770,16267859-16268268,16268373-16268631	AT1G43170.4  CDS  gene_syn ARABIDOPSIS RIBOSOMAL PROTEIN 1, ARP1, F1I21.1, F1I21_1, RPL3A, emb2207, embryo defective 2207  gene ARP1  function Encodes a cytoplasmic ribosomal protein.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_component cytosolic large ribosomal subunit|GO:0022625|2227432|TAS  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function structural constituent of ribosome|GO:0003735||ISS  product ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1); structural constituent of ribosome  note ARABIDOPSIS RIBOSOMAL PROTEIN 1 (ARP1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: embryonic development ending in seed dormancy, translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L3 (InterPro:IPR000597), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: RPL3B (R-PROTEIN L3 B); structural constituent of ribosome (TAIR:AT1G61580.1); Has 1520 Blast hits to 1515 proteins in 462 species: Archae - 229; Bacteria - 341; Metazoa - 347; Fungi - 107; Plants - 150; Viruses - 1; Other Eukaryotes - 345 (source: NCBI BLink).  protein_id AT1G43170.4p  transcript_id AT1G43170.4  protein_id AT1G43170.4p  transcript_id AT1G43170.4  
At1g43171	chr1:016269989	0.0	W/16269989-16270327	AT1G43171.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G50220.1); Has 15 Blast hits to 15 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G43171.1p  transcript_id AT1G43171.1  protein_id AT1G43171.1p  transcript_id AT1G43171.1  
At1g43180	chr1:016271201	0.0	C/16271201-16272798	AT1G43180.1  pseudogenic_transcript  pseudo  gene_syn F1I21.15  note pseudogene, putative disease resistance protein, similar to disease resistance protein GI:8843900 from (Arabidopsis thaliana); blastp match of 30% identity and 8.6e-32 P-value to GP|4092774|gb|AAC99466.1||AF105140 disease resistance gene homolog 9N {Brassica napus}  
At1g43190	chr1:016278129	0.0	C/16278129-16278185,16277967-16278038,16277795-16277871,16277642-16277717,16277328-16277451,16277074-16277138,16276916-16276965,16276763-16276804,16276634-16276685,16276529-16276550,16276430-16276443,16276164-16276271,16275935-16276078,16275432-16275821	AT1G43190.3  CDS  gene_syn F1I21.14, F1I21_14  go_component nucleus|GO:0005634||IEA  go_process mRNA processing|GO:0006397||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function RNA binding|GO:0003723||ISS  product polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative  note polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), HnRNP-L/PTB/hephaestus splicing factor (InterPro:IPR006536), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1); RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT3G01150.1); Has 1856 Blast hits to 1564 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 1268; Fungi - 33; Plants - 323; Viruses - 0; Other Eukaryotes - 232 (source: NCBI BLink).  protein_id AT1G43190.3p  transcript_id AT1G43190.3  protein_id AT1G43190.3p  transcript_id AT1G43190.3  
At1g43190	chr1:016278129	0.0	C/16278129-16278185,16277967-16278038,16277795-16277871,16277642-16277723,16277328-16277451,16277074-16277138,16276916-16276965,16276763-16276804,16276634-16276685,16276529-16276550,16276430-16276443,16276164-16276271,16275935-16276078,16275432-16275821	AT1G43190.1  CDS  gene_syn F1I21.14, F1I21_14  go_component nucleus|GO:0005634||IEA  go_process mRNA processing|GO:0006397||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function RNA binding|GO:0003723||ISS  product polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative  note polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), HnRNP-L/PTB/hephaestus splicing factor (InterPro:IPR006536), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1); RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT3G01150.1); Has 1848 Blast hits to 1556 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 1263; Fungi - 33; Plants - 321; Viruses - 0; Other Eukaryotes - 231 (source: NCBI BLink).  protein_id AT1G43190.1p  transcript_id AT1G43190.1  protein_id AT1G43190.1p  transcript_id AT1G43190.1  
At1g43190	chr1:016278129	0.0	C/16278129-16278185,16277967-16278038,16277795-16277871,16277642-16277723,16277328-16277451,16277074-16277138,16276916-16276965,16276763-16276804,16276634-16276685,16276529-16276550,16276430-16276443,16276164-16276271,16275935-16276078,16275432-16275821	AT1G43190.2  CDS  gene_syn F1I21.14, F1I21_14  go_component nucleus|GO:0005634||IEA  go_process mRNA processing|GO:0006397||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function RNA binding|GO:0003723||ISS  product polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative  note polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), HnRNP-L/PTB/hephaestus splicing factor (InterPro:IPR006536), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1); RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT3G01150.1); Has 1848 Blast hits to 1556 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 1263; Fungi - 33; Plants - 321; Viruses - 0; Other Eukaryotes - 231 (source: NCBI BLink).  protein_id AT1G43190.2p  transcript_id AT1G43190.2  protein_id AT1G43190.2p  transcript_id AT1G43190.2  
At1g43195	chr1:016279370	0.0	W/16279370-16279882	AT1G43195.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.6e-11 P-value blast match to GB:CAA36616 ORF4 (Ty1_Copia-element) (Solanum tuberosum)  
At1g43200	chr1:016282132	0.0	W/16282132-16285446	AT1G43200.1  mRNA_TE_gene  pseudo  gene_syn F1I21.20, F1I21_20  note Transposable element gene, pseudogene, hypothetical protein, contains Pfam profile PF03384: Drosophila protein of unknown function, DUF287  
At1g43205	chr1:016285963	0.0	C/16285963-16286376	AT1G43205.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07523.1)  
At1g43210	chr1:016287983	0.0	C/16287983-16290339	AT1G43210.1  mRNA_TE_gene  pseudo  gene_syn F1I21.13  note Transposable element gene, Mutator-like transposase family, has a 7.3e-81 P-value blast match to O22278 /203-375 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g43220	chr1:016296360	0.0	W/16296360-16297391	AT1G43220.2  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At1g43230	chr1:016297945	0.0	C/16297945-16298358	AT1G43230.1  mRNA_TE_gene  pseudo  gene_syn F1I21.11, F1I21_11  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07523.1)  
At1g43240	chr1:016300014	0.0	C/16300014-16302277	AT1G43240.1  mRNA_TE_gene  pseudo  gene_syn F1I21.10, F1I21_10  note Transposable element gene, Mutator-like transposase family, has a 9.9e-77 P-value blast match to O22278 /203-375 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g43245	chr1:016310119	0.0	C/16310119-16310883,16309926-16310024,16308982-16309794	AT1G43245.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214); Has 432 Blast hits to 430 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 212; Fungi - 80; Plants - 47; Viruses - 3; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT1G43245.1p  transcript_id AT1G43245.1  protein_id AT1G43245.1p  transcript_id AT1G43245.1  
At1g43250	chr1:016311524	0.0	W/16311524-16316838	AT1G43250.1  mRNA_TE_gene  pseudo  gene_syn F1I21.4  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.0e-49 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At1g43260	chr1:016318253	0.0	W/16318253-16318340,16318438-16319234	AT1G43260.1  CDS  gene_syn F1I21.5, F1I21_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: protein dimerization (TAIR:AT5G31412.1); Has 380 Blast hits to 376 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 2; Plants - 368; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G43260.1p  transcript_id AT1G43260.1  protein_id AT1G43260.1p  transcript_id AT1G43260.1  
At1g43270	chr1:016319951	0.0	W/16319951-16324362	AT1G43270.1  mRNA_TE_gene  pseudo  gene_syn F1I21.6  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 9.0e-37 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At1g43280	chr1:016330759	0.0	W/16330759-16332502	AT1G43280.1  mRNA_TE_gene  pseudo  gene_syn F1I21.7  note Transposable element gene, Mutator-like transposase family, has a 6.6e-47 P-value blast match to Q9ZQM3 /24-192 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g43290	chr1:016333783	0.0	C/16333783-16334448	AT1G43290.1  mRNA_TE_gene  pseudo  gene_syn F1I21.9, F1I21_9  note Transposable element gene, pseudogene, hypothetical protein  
At1g43300	chr1:016335700	0.0	C/16335700-16338702	AT1G43300.1  mRNA_TE_gene  pseudo  gene_syn F1I21.8, F1I21_8  note Transposable element gene, pseudogene, Ulp1 protease family, contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain  
At1g43310	chr1:016346353	0.0	C/16346353-16346475,16346144-16346229,16345974-16346046	AT1G43310.1  CDS  gene_syn F1I21.17, F1I21_17  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product triose phosphate/phosphate translocator-related  note triose phosphate/phosphate translocator-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: CUE1 (CAB UNDEREXPRESSED 1); antiporter/ triose-phosphate transmembrane transporter (TAIR:AT5G33320.1); Has 206 Blast hits to 196 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 189; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G43310.1p  transcript_id AT1G43310.1  protein_id AT1G43310.1p  transcript_id AT1G43310.1  
At1g43320	chr1:016356762	0.0	W/16356762-16357118	AT1G43320.1  CDS  gene_syn F1I21.16, F1I21_16  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G43320.1p  transcript_id AT1G43320.1  protein_id AT1G43320.1p  transcript_id AT1G43320.1  
At1g43330	chr1:016359029	0.0	W/16359029-16359139,16359684-16359767,16359862-16360023	AT1G43330.1  CDS  gene_syn T10P12.11, T10P12_11  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family protein-related  note myb family protein-related; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: ATMYB3R2 (MYB DOMAIN PROTEIN 3R2); DNA binding / transcription factor (TAIR:AT4G00540.2); Has 519 Blast hits to 518 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 301; Fungi - 9; Plants - 101; Viruses - 3; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT1G43330.1p  transcript_id AT1G43330.1  protein_id AT1G43330.1p  transcript_id AT1G43330.1  
At1g43387	chr1:016370494	0.0	C/16370494-16374521	AT1G43387.1  mRNA_TE_gene  pseudo  gene_syn T10P12.1  note Transposable element gene, copia-like retrotransposon family, has a 6.0e-254 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At1g43415	chr1:016378974	0.0	W/16378974-16379105,16379184-16379405	AT1G43415.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G43415.1p  transcript_id AT1G43415.1  protein_id AT1G43415.1p  transcript_id AT1G43415.1  
At1g43444	chr1:016382157	0.0	C/16382157-16386291	AT1G43444.1  mRNA_TE_gene  pseudo  gene_syn T10P12.2  note Transposable element gene, gypsy-like retrotransposon family, has a 7.2e-242 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At1g43502	chr1:016388535	0.0	W/16388535-16392796	AT1G43502.1  mRNA_TE_gene  pseudo  gene_syn T10P12.3  note Transposable element gene, gypsy-like retrotransposon family, has a 1.1e-158 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At1g43560	chr1:016399661	0.0	C/16399661-16399828,16398861-16398952,16398593-16398770,16398359-16398424	AT1G43560.1  CDS  gene_syn AT1G43565, Arabidopsis thioredoxin y2, Aty2, T10P12.4, T10P12_4  gene Aty2  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process glycerol ether metabolic process|GO:0006662||IEA  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  product Aty2 (Arabidopsis thioredoxin y2); electron carrier/ protein disulfide oxidoreductase  note Arabidopsis thioredoxin y2 (Aty2); FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: glycerol ether metabolic process, cell redox homeostasis; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin (InterPro:IPR005746), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATY1 (ARABIDOPSIS THIOREDOXIN Y1); electron carrier/ protein disulfide oxidoreductase (TAIR:AT1G76760.1); Has 15695 Blast hits to 14336 proteins in 1744 species: Archae - 179; Bacteria - 6351; Metazoa - 3049; Fungi - 867; Plants - 1250; Viruses - 9; Other Eukaryotes - 3990 (source: NCBI BLink).  protein_id AT1G43560.1p  transcript_id AT1G43560.1  protein_id AT1G43560.1p  transcript_id AT1G43560.1  
At1g43570	chr1:016401870	0.0	C/16401870-16402916	AT1G43570.1  mRNA_TE_gene  pseudo  gene_syn T10P12.5, T10P12_5  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G52065.1); similar to putative AP endonuclease/reverse transcriptase [Brassica napus] (GB:AAM82604.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446)  
At1g43575	chr1:016405710	0.0	C/16405710-16406745	AT1G43575.1  mRNA_TE_gene  pseudo  gene_syn T10P12.18  note Transposable element gene, copia-like retrotransposon family, has a 2.1e-34 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At1g43580	chr1:016412335	0.0	C/16412335-16412612,16411422-16411819,16411154-16411347,16410673-16411068	AT1G43580.1  CDS  gene_syn T10P12.6, T10P12_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G43580.1p  transcript_id AT1G43580.1  protein_id AT1G43580.1p  transcript_id AT1G43580.1  
At1g43590	chr1:016414121	0.0	W/16414121-16414627	AT1G43590.1  mRNA_TE_gene  pseudo  gene_syn T10P12.13, T10P12_13  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G34838.1); similar to hypothetical protein 24.t00017 [Brassica oleracea] (GB:ABD64939.1); contains InterPro domain Protein of unknown function DUF635; (InterPro:IPR006912)  
At1g43600	chr1:016415357	0.0	W/16415357-16416022	AT1G43600.1  CDS  gene_syn T10P12.14, T10P12_14  go_component nucleus|GO:0005634||IEA  go_function phosphoprotein phosphatase activity|GO:0004721||IEA  go_process biological_process|GO:0008150||ND  product NLI interacting factor (NIF) family protein  note NLI interacting factor (NIF) family protein; FUNCTIONS IN: phosphoprotein phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: FCP1-like phosphatase, phosphatase domain (InterPro:IPR011947), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: NLI interacting factor (NIF) family protein (TAIR:AT1G43610.1); Has 1177 Blast hits to 1177 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 437; Fungi - 171; Plants - 146; Viruses - 2; Other Eukaryotes - 421 (source: NCBI BLink).  protein_id AT1G43600.1p  transcript_id AT1G43600.1  protein_id AT1G43600.1p  transcript_id AT1G43600.1  
At1g43610	chr1:016424578	0.0	W/16424578-16425345	AT1G43610.1  CDS  gene_syn T10P12.15, T10P12_15  go_component nucleus|GO:0005634||IEA  go_function phosphoprotein phosphatase activity|GO:0004721||IEA  go_process biological_process|GO:0008150||ND  product NLI interacting factor (NIF) family protein  note NLI interacting factor (NIF) family protein; FUNCTIONS IN: phosphoprotein phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: FCP1-like phosphatase, phosphatase domain (InterPro:IPR011947), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: NLI interacting factor (NIF) family protein (TAIR:AT1G43600.1); Has 1152 Blast hits to 1152 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 439; Fungi - 158; Plants - 145; Viruses - 2; Other Eukaryotes - 408 (source: NCBI BLink).  protein_id AT1G43610.1p  transcript_id AT1G43610.1  protein_id AT1G43610.1p  transcript_id AT1G43610.1  
At1g43620	chr1:016429350	0.0	C/16429350-16429500,16429085-16429233,16428628-16428867,16428177-16428288,16427914-16428084,16427768-16427831,16427614-16427671,16427343-16427520,16426969-16427099,16426608-16426710,16426423-16426502,16426280-16426327,16426000-16426149,16425654-16425866	AT1G43620.1  CDS  gene_syn T10P12.7, T10P12_7  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process metabolic process|GO:0008152||IEA  go_process lipid glycosylation|GO:0030259||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glucose:sterol glucosyltransferase, putative  note UDP-glucose:sterol glucosyltransferase, putative; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: lipid glycosylation, carbohydrate metabolic process, metabolic process; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 28 (InterPro:IPR004276), UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucose:sterol glucosyltransferase (UGT80A2) (TAIR:AT3G07020.2); Has 1804 Blast hits to 1787 proteins in 429 species: Archae - 0; Bacteria - 971; Metazoa - 434; Fungi - 256; Plants - 72; Viruses - 8; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT1G43620.1p  transcript_id AT1G43620.1  protein_id AT1G43620.1p  transcript_id AT1G43620.1  
At1g43620	chr1:016429350	0.0	C/16429350-16429500,16429085-16429233,16428628-16428867,16428177-16428288,16427914-16428084,16427768-16427831,16427614-16427671,16427343-16427520,16426969-16427099,16426608-16426710,16426423-16426502,16426280-16426327,16426000-16426149,16425654-16425866	AT1G43620.2  CDS  gene_syn T10P12.7, T10P12_7  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process metabolic process|GO:0008152||IEA  go_process lipid glycosylation|GO:0030259||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glucose:sterol glucosyltransferase, putative  note UDP-glucose:sterol glucosyltransferase, putative; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: lipid glycosylation, carbohydrate metabolic process, metabolic process; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 28 (InterPro:IPR004276), UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucose:sterol glucosyltransferase (UGT80A2) (TAIR:AT3G07020.2); Has 1804 Blast hits to 1787 proteins in 429 species: Archae - 0; Bacteria - 971; Metazoa - 434; Fungi - 256; Plants - 72; Viruses - 8; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT1G43620.2p  transcript_id AT1G43620.2  protein_id AT1G43620.2p  transcript_id AT1G43620.2  
At1g43620	chr1:016429350	0.0	C/16429350-16429500,16429085-16429233,16428628-16428867,16428177-16428288,16427914-16428084,16427768-16427831,16427614-16427671,16427343-16427520,16426969-16427099,16426608-16426710,16426423-16426502,16426280-16426327,16426000-16426149,16425654-16425866	AT1G43620.3  CDS  gene_syn T10P12.7, T10P12_7  go_component plasma membrane|GO:0005886|17151019|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process metabolic process|GO:0008152||IEA  go_process lipid glycosylation|GO:0030259||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glucose:sterol glucosyltransferase, putative  note UDP-glucose:sterol glucosyltransferase, putative; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: lipid glycosylation, carbohydrate metabolic process, metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 28 (InterPro:IPR004276), UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucose:sterol glucosyltransferase (UGT80A2) (TAIR:AT3G07020.2); Has 1804 Blast hits to 1787 proteins in 429 species: Archae - 0; Bacteria - 971; Metazoa - 434; Fungi - 256; Plants - 72; Viruses - 8; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT1G43620.3p  transcript_id AT1G43620.3  protein_id AT1G43620.3p  transcript_id AT1G43620.3  
At1g43624	chr1:016432842	0.0	C/16432842-16432946	AT1G43624.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G43624.1p  transcript_id AT1G43624.1  protein_id AT1G43624.1p  transcript_id AT1G43624.1  
At1g43630	chr1:016436445	0.0	C/16436445-16437686	AT1G43630.1  CDS  gene_syn T10P12.8, T10P12_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF793 (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G18740.1); Has 112 Blast hits to 112 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 110; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G43630.1p  transcript_id AT1G43630.1  protein_id AT1G43630.1p  transcript_id AT1G43630.1  
At1g43640	chr1:016440900	0.0	C/16440900-16441253,16440738-16440825,16440425-16440557,16439619-16440333	AT1G43640.1  CDS  gene_syn AtTLP5, T10P12.9, T10P12_9, TUBBY LIKE PROTEIN 5  gene AtTLP5  function Member of TLP family  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function phosphoric diester hydrolase activity|GO:0008081||ISS  product AtTLP5 (TUBBY LIKE PROTEIN 5); phosphoric diester hydrolase/ transcription factor  note TUBBY LIKE PROTEIN 5 (AtTLP5); FUNCTIONS IN: transcription factor activity, phosphoric diester hydrolase activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, petal, sepal, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: AtTLP1 (TUBBY LIKE PROTEIN 1); phosphoric diester hydrolase/ transcription factor (TAIR:AT1G76900.2); Has 657 Blast hits to 657 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 290; Fungi - 2; Plants - 298; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT1G43640.1p  transcript_id AT1G43640.1  protein_id AT1G43640.1p  transcript_id AT1G43640.1  
At1g43650	chr1:016446639	0.0	C/16446639-16446814,16446504-16446566,16446303-16446419,16445445-16445676,16444355-16444513,16444120-16444271,16443861-16443993	AT1G43650.1  CDS  gene_syn F2J6.1, F2J6_1  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  product integral membrane family protein / nodulin MtN21-related  note integral membrane family protein / nodulin MtN21-related; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT5G64700.1); Has 2010 Blast hits to 1999 proteins in 325 species: Archae - 16; Bacteria - 658; Metazoa - 4; Fungi - 0; Plants - 639; Viruses - 0; Other Eukaryotes - 693 (source: NCBI BLink).  protein_id AT1G43650.1p  transcript_id AT1G43650.1  protein_id AT1G43650.1p  transcript_id AT1G43650.1  
At1g43660	chr1:016450360	0.0	W/16450360-16450644	AT1G43660.1  mRNA_TE_gene  pseudo  gene_syn F2J6.16, F2J6_16  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48290.1); similar to Transposon MuDR mudrA-like protein, putative [Solanum demissum] (GB:AAT39304.2); similar to Os06g0502800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057710.1); similar to transposon protein, putative, Mutator sub-class [Oryza sativa (japonica cultivar-group)] (GB:ABF95707.1)  
At1g43665	chr1:016453518	0.0	C/16453518-16453804,16452981-16453065	AT1G43665.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07747.1); Has 194 Blast hits to 191 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 194; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G43665.1p  transcript_id AT1G43665.1  protein_id AT1G43665.1p  transcript_id AT1G43665.1  
At1g43666	chr1:016461181	0.0	C/16461181-16461471	AT1G43666.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_function molecular_function|GO:0003674||ND  product lipid transfer protein-related  note lipid transfer protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12825.1); Has 189 Blast hits to 186 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 189; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G43666.1p  transcript_id AT1G43666.1  protein_id AT1G43666.1p  transcript_id AT1G43666.1  
At1g43667	chr1:016465170	0.0	C/16465170-16465466	AT1G43667.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_function molecular_function|GO:0003674||ND  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07747.1); Has 194 Blast hits to 191 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 194; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G43667.1p  transcript_id AT1G43667.1  protein_id AT1G43667.1p  transcript_id AT1G43667.1  
At1g43670	chr1:016468184	0.0	W/16468184-16468342,16468565-16468612,16468681-16468755,16468842-16468903,16468989-16469055,16469169-16469282,16469378-16469464,16469542-16469612,16469701-16469766,16469861-16469947,16470072-16470147,16470234-16470347	AT1G43670.1  CDS  gene_syn F2J6.2, F2J6_2  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function phosphoric ester hydrolase activity|GO:0042578||IEA  go_component cellular_component|GO:0005575||ND  go_process fructose metabolic process|GO:0006000||ISS  go_function fructose 1,6-bisphosphate 1-phosphatase activity|GO:0042132||ISS  product fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative  note fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative; FUNCTIONS IN: fructose 1,6-bisphosphate 1-phosphatase activity, phosphoric ester hydrolase activity; INVOLVED IN: carbohydrate metabolic process, fructose metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Inositol monophosphatase/Fructose-1,6-bisphosphatase (InterPro:IPR017955), Fructose-1,6-bisphosphatase (InterPro:IPR000146); BEST Arabidopsis thaliana protein match is: fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative (TAIR:AT3G54050.1); Has 2339 Blast hits to 2334 proteins in 798 species: Archae - 22; Bacteria - 1225; Metazoa - 341; Fungi - 107; Plants - 205; Viruses - 0; Other Eukaryotes - 439 (source: NCBI BLink).  protein_id AT1G43670.1p  transcript_id AT1G43670.1  protein_id AT1G43670.1p  transcript_id AT1G43670.1  
At1g43675	chr1:016470872	0.0	W/16470872-16471248	AT1G43675.1  mRNA_TE_gene  pseudo  gene_syn F2J6.17  function similarity to non-LTR retroelement protein  note Transposable element gene, expressed protein  
At1g43680	chr1:016472205	0.0	W/16472205-16472422,16472573-16472696,16472865-16473266	AT1G43680.1  CDS  gene_syn F2J6.3, F2J6_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: nucleic acid binding / zinc ion binding (TAIR:AT5G36228.1); Has 54 Blast hits to 52 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G43680.1p  transcript_id AT1G43680.1  protein_id AT1G43680.1p  transcript_id AT1G43680.1  
At1g43690	chr1:016478519	0.0	W/16478519-16478925,16480424-16480502,16480585-16480721,16480822-16480933,16481040-16481216,16481594-16481665,16481774-16482589	AT1G43690.1  CDS  gene_syn F2J6.5, F2J6_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ubiquitin interaction motif-containing protein  note ubiquitin interaction motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin interacting motif (InterPro:IPR003903); Has 306 Blast hits to 287 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 220; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT1G43690.1p  transcript_id AT1G43690.1  protein_id AT1G43690.1p  transcript_id AT1G43690.1  
At1g43700	chr1:016484352	0.0	W/16484352-16484950,16485046-16485178,16485636-16485720,16485809-16486017	AT1G43700.1  CDS  gene_syn F2J6.6, F2J6_6, VIP1, VIRE2-INTERACTING PROTEIN, VIRE2-INTERACTING PROTEIN 1  gene VIP1  function Encodes a VirE2-interacting protein. VIP1 mediates nuclear translocation of VirE2 via its amino half, and interacts with histone H2A via it carboxyl half.  go_component nucleus|GO:0005634|15824315|IDA  go_process DNA mediated transformation|GO:0009294|15824315|IDA  go_process nuclear import|GO:0051170|15824315|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function protein binding|GO:0005515|11432846|IPI  product VIP1 (VIRE2-INTERACTING PROTEIN 1); protein binding / transcription factor  note VIRE2-INTERACTING PROTEIN 1 (VIP1); FUNCTIONS IN: protein binding, transcription factor activity; INVOLVED IN: DNA mediated transformation, nuclear import; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: bZIP transcription factor (POSF21) (TAIR:AT2G31370.5); Has 921 Blast hits to 921 proteins in 128 species: Archae - 0; Bacteria - 37; Metazoa - 52; Fungi - 44; Plants - 761; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT1G43700.1p  transcript_id AT1G43700.1  protein_id AT1G43700.1p  transcript_id AT1G43700.1  
At1g43710	chr1:016487977	0.0	C/16487977-16488298,16487676-16487907,16487399-16487592,16487183-16487319,16486534-16487097	AT1G43710.1  CDS  gene_syn F2J6.7, F2J6_7, emb1075, embryo defective 1075  gene emb1075  go_function catalytic activity|GO:0003824||IEA  go_function carboxy-lyase activity|GO:0016831||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_component cellular_component|GO:0005575||ND  go_process amino acid metabolic process|GO:0006520||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function carboxy-lyase activity|GO:0016831||ISS  product emb1075 (embryo defective 1075); carboxy-lyase/ catalytic/ pyridoxal phosphate binding  note embryo defective 1075 (emb1075); FUNCTIONS IN: pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity; INVOLVED IN: embryonic development ending in seed dormancy, amino acid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: GAD2 (GLUTAMATE DECARBOXYLASE 2); calmodulin binding / glutamate decarboxylase (TAIR:AT1G65960.2); Has 2100 Blast hits to 2100 proteins in 584 species: Archae - 120; Bacteria - 1073; Metazoa - 477; Fungi - 127; Plants - 107; Viruses - 11; Other Eukaryotes - 185 (source: NCBI BLink).  protein_id AT1G43710.1p  transcript_id AT1G43710.1  protein_id AT1G43710.1p  transcript_id AT1G43710.1  
At1g43715	chr1:016489028	0.0	C/16489028-16491339	AT1G43715.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.6e-130 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element)  
At1g43720	chr1:016495080	0.0	W/16495080-16495286,16495341-16496078	AT1G43720.1  CDS  gene_syn F2J6.20, F2J6_20  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G42870.1); Has 11 Blast hits to 11 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G43720.1p  transcript_id AT1G43720.1  protein_id AT1G43720.1p  transcript_id AT1G43720.1  
At1g43722	chr1:016496403	0.0	W/16496403-16497377	AT1G43722.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 695 Blast hits to 688 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 164; Fungi - 25; Plants - 506; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G43722.1p  transcript_id AT1G43722.1  protein_id AT1G43722.1p  transcript_id AT1G43722.1  
At1g43723	chr1:016498989	0.0	C/16498989-16500296	AT1G43723.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to En/Spm-like transposon-like protein, blastp match of 34% identity and 3.6e-16 P-value to GP|18565437|dbj|BAB84624.1||AP003450 En/Spm-like transposon-like protein {Oryza sativa (japonica cultivar-group)}  
At1g43724	chr1:016501543	0.0	C/16501543-16502406	AT1G43724.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 3.1e-61 P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At1g43725	chr1:016503436	0.0	W/16503436-16507468	AT1G43725.1  mRNA_TE_gene  pseudo  gene_syn F2J6.10  note Transposable element gene, copia-like retrotransposon family, has a 1.2e-107 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element)  
At1g43730	chr1:016509458	0.0	C/16509458-16509784,16508723-16509358	AT1G43730.1  CDS  gene_syn F2J6.21, F2J6_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G04650.1); Has 562 Blast hits to 549 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 562; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G43730.1p  transcript_id AT1G43730.1  protein_id AT1G43730.1p  transcript_id AT1G43730.1  
At1g43740	chr1:016513076	0.0	C/16513076-16515138	AT1G43740.1  mRNA_TE_gene  pseudo  gene_syn F2J6.19, F2J6_19  note Transposable element gene, gypsy-like retrotransposon family (Athila)  
At1g43745	chr1:016516119	0.0	C/16516119-16518727	AT1G43745.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.4e-218 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g43750	chr1:016522213	0.0	C/16522213-16524114	AT1G43750.1  mRNA_TE_gene  pseudo  gene_syn F2J6.12, F2J6_12  note Transposable element gene, gypsy-like retrotransposon family (Athila)  
At1g43755	chr1:016525242	0.0	C/16525242-16527812	AT1G43755.1  mRNA_TE_gene  pseudo  gene_syn F2J6.13  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.1e-209 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g43760	chr1:016530552	0.0	C/16530552-16531065,16530242-16530390,16528880-16530097	AT1G43760.1  CDS  gene_syn F2J6.14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G40390.1); Has 2614 Blast hits to 2551 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 1517; Fungi - 2; Plants - 1086; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G43760.1p  transcript_id AT1G43760.1  protein_id AT1G43760.1p  transcript_id AT1G43760.1  
At1g43763	chr1:016531128	0.0	W/16531128-16533402	AT1G43763.1  mRNA_TE_gene  pseudo  gene_syn F2J6.15  note Transposable element gene, copia-like retrotransposon family, has a 1.9e-96 P-value blast match to GB:AAB82754 retrofit (TY1_Copia-element) (Oryza longistaminata)  
At1g43765	chr1:016537511	0.0	W/16537511-16538091	AT1G43765.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G43765.1  
At1g43766	chr1:016546067	0.0	W/16546067-16546415	AT1G43766.1  pseudogenic_transcript  pseudo  gene_syn F2J6.18  note pseudogene, putative phosphofructokinase beta subunit, similar to pyrophosphate-dependent phosphofructokinase beta subunit GB:AAC67586 GI:3790100 from (Citrus x paradisi); blastp match of 58% identity and 9.9e-12 P-value to GP|3790100|gb|AAC67586.1||AF095520 pyrophosphate-dependent phosphofructokinase beta subunit {Citrus x paradisi}  
At1g43770	chr1:016548509	0.0	W/16548509-16548526,16548624-16548709,16548817-16549593,16549673-16549897,16549981-16550108,16550196-16550257	AT1G43770.2  CDS  gene_syn F28H19.3, F28H19_3  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product PHD finger family protein  note PHD finger family protein; FUNCTIONS IN: protein binding, DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT5G16680.1); Has 356 Blast hits to 311 proteins in 78 species: Archae - 0; Bacteria - 8; Metazoa - 139; Fungi - 45; Plants - 105; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT1G43770.2p  transcript_id AT1G43770.2  protein_id AT1G43770.2p  transcript_id AT1G43770.2  
At1g43770	chr1:016548509	0.0	W/16548509-16548526,16548624-16548709,16548817-16549593,16549673-16549907	AT1G43770.1  CDS  gene_syn F28H19.3, F28H19_3  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product PHD finger family protein  note PHD finger family protein; FUNCTIONS IN: protein binding, DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); Has 349 Blast hits to 302 proteins in 75 species: Archae - 0; Bacteria - 8; Metazoa - 141; Fungi - 47; Plants - 94; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT1G43770.1p  transcript_id AT1G43770.1  protein_id AT1G43770.1p  transcript_id AT1G43770.1  
At1g43775	chr1:016552270	0.0	C/16552270-16556524	AT1G43775.1  mRNA_TE_gene  pseudo  gene_syn F28H19.4  note Transposable element gene, copia-like retrotransposon family, has a 3.6e-147 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)  
At1g43777	chr1:016557574	0.0	C/16557574-16558819	AT1G43777.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G28250.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1)  
At1g43780	chr1:016563811	0.0	W/16563811-16564075,16564781-16564888,16564988-16565080,16565164-16565345,16565438-16565716,16566204-16566337,16566423-16566515,16566769-16566886,16567232-16567399	AT1G43780.1  CDS  gene_syn F28H19.5, F28H19_5, scpl44, serine carboxypeptidase-like 44  gene scpl44  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl44 (serine carboxypeptidase-like 44); serine-type carboxypeptidase  note serine carboxypeptidase-like 44 (scpl44); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl42 (serine carboxypeptidase-like 42); serine-type carboxypeptidase (TAIR:AT5G42240.1); Has 2647 Blast hits to 2591 proteins in 326 species: Archae - 0; Bacteria - 321; Metazoa - 575; Fungi - 566; Plants - 884; Viruses - 0; Other Eukaryotes - 301 (source: NCBI BLink).  protein_id AT1G43780.1p  transcript_id AT1G43780.1  protein_id AT1G43780.1p  transcript_id AT1G43780.1  
At1g43781	chr1:016568967	0.0	W/16568967-16575486	AT1G43781.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G53790; F-box family protein  
At1g43785	chr1:016569860	0.0	C/16569860-16574910	AT1G43785.1  mRNA_TE_gene  pseudo  gene_syn F28H19.6  note Transposable element gene, copia-like retrotransposon family, has a 5.7e-174 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At1g43790	chr1:016575952	0.0	W/16575952-16576302	AT1G43790.1  CDS  gene_syn F28H19.19, F28H19_19, TED6, TRACHEARY ELEMENT DIFFERENTIATION-RELATED 6  gene TED6  go_component cellular_component|GO:0005575||ND  go_process secondary cell wall biogenesis|GO:0009834|19383897|IGI  go_function molecular_function|GO:0003674||ND  product TED6 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 6)  note TRACHEARY ELEMENT DIFFERENTIATION-RELATED 6 (TED6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: secondary cell wall biogenesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7) (TAIR:AT5G48920.1); Has 24 Blast hits to 17 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G43790.1p  transcript_id AT1G43790.1  protein_id AT1G43790.1p  transcript_id AT1G43790.1  
At1g43800	chr1:016577662	0.0	W/16577662-16577973,16578156-16578449,16578980-16579549	AT1G43800.1  CDS  gene_syn F28H19.7, F28H19_7  go_component membrane|GO:0016020|17432890|IDA  go_process fatty acid metabolic process|GO:0006631||IEA  go_process fatty acid biosynthetic process|GO:0006633||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function acyl-[acyl-carrier-protein] desaturase activity|GO:0045300||IEA  go_function transition metal ion binding|GO:0046914||IEA  go_process fatty acid biosynthetic process|GO:0006633||ISS  go_function acyl-[acyl-carrier-protein] desaturase activity|GO:0045300||ISS  product acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative  note acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative; FUNCTIONS IN: acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding; INVOLVED IN: fatty acid metabolic process, fatty acid biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Ribonucleotide reductase-related (InterPro:IPR012348), Fatty acid desaturase, type 2 (InterPro:IPR005067), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078), Stearoyl-ACP desaturase, conserved site (InterPro:IPR005803); BEST Arabidopsis thaliana protein match is: SSI2; acyl-[acyl-carrier-protein] desaturase/ stearoyl-CoA 9-desaturase (TAIR:AT2G43710.1); Has 591 Blast hits to 588 proteins in 130 species: Archae - 0; Bacteria - 223; Metazoa - 2; Fungi - 0; Plants - 312; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT1G43800.1p  transcript_id AT1G43800.1  protein_id AT1G43800.1p  transcript_id AT1G43800.1  
At1g43810	chr1:016580447	0.0	C/16580447-16580800	AT1G43810.1  CDS  gene_syn F28H19.20, F28H19_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pedicel, leaf; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G43810.1p  transcript_id AT1G43810.1  protein_id AT1G43810.1p  transcript_id AT1G43810.1  
At1g43820	chr1:016585705	0.0	C/16585705-16585776	AT1G43820.1  tRNA  gene_syn 52129.TRNA-ASP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asp (anticodon: GTC)  transcript_id AT1G43820.1  
At1g43830	chr1:016585763	0.0	W/16585763-16589507	AT1G43830.1  mRNA_TE_gene  pseudo  gene_syn F28H19.8  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.0e-118 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At1g43835	chr1:016606612	0.0	W/16606612-16607394	AT1G43835.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mariner-like transposase family, has a 2.7e-63 P-value blast match to GB:AAC28384 mariner transposase (Mariner_TC1-element) (Glycine max)  
At1g43840	chr1:016608898	0.0	W/16608898-16611040	AT1G43840.1  mRNA_TE_gene  pseudo  gene_syn F28H19.9, F28H19_9  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 5.2e-121 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At1g43845	chr1:016613541	0.0	W/16613541-16614137	AT1G43845.1  mRNA_TE_gene  pseudo  note Transposable element gene, hypothetical protein  
At1g43850	chr1:016617872	0.0	W/16617872-16618837,16618922-16619041,16619194-16619242,16619332-16619546,16619634-16619702,16619946-16620043,16620139-16620232,16620429-16620498,16620644-16621596	AT1G43850.1  CDS  gene_syn F28H19.10, F28H19_10, SEU, seuss  gene SEU  function Encodes a transcriptional co-regulator of AGAMOUS, that functions with LEUNIG to repress AG in the outer floral whorls.  go_process multicellular organismal development|GO:0007275|11782418|IMP  go_process regulation of flower development|GO:0009909|16854969|IGI  go_function DNA binding|GO:0003677|16854969|IDA  go_function transcription cofactor activity|GO:0003712|11782418|IMP  go_function protein binding|GO:0005515|16854969|IPI  go_function protein binding|GO:0005515||NAS  go_function protein heterodimerization activity|GO:0046982|16679456|IPI  product SEU (seuss); DNA binding / protein binding / protein heterodimerization/ transcription cofactor  note seuss (SEU); FUNCTIONS IN: protein binding, transcription cofactor activity, protein heterodimerization activity, DNA binding; INVOLVED IN: multicellular organismal development, regulation of flower development; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62090.2); Has 74047 Blast hits to 23896 proteins in 937 species: Archae - 27; Bacteria - 2296; Metazoa - 27110; Fungi - 7596; Plants - 3096; Viruses - 691; Other Eukaryotes - 33231 (source: NCBI BLink).  protein_id AT1G43850.1p  transcript_id AT1G43850.1  protein_id AT1G43850.1p  transcript_id AT1G43850.1  
At1g43850	chr1:016617872	0.0	W/16617872-16618837,16618922-16619041,16619194-16619242,16619332-16619546,16619634-16619702,16619946-16620043,16620139-16620232,16620429-16620498,16620644-16621596	AT1G43850.2  CDS  gene_syn F28H19.10, F28H19_10, SEU, seuss  gene SEU  function Encodes a transcriptional co-regulator of AGAMOUS, that functions with LEUNIG to repress AG in the outer floral whorls.  go_process multicellular organismal development|GO:0007275|11782418|IMP  go_process regulation of flower development|GO:0009909|16854969|IGI  go_function DNA binding|GO:0003677|16854969|IDA  go_function transcription cofactor activity|GO:0003712|11782418|IMP  go_function protein binding|GO:0005515|16854969|IPI  go_function protein binding|GO:0005515||NAS  go_function protein heterodimerization activity|GO:0046982|16679456|IPI  product SEU (seuss); DNA binding / protein binding / protein heterodimerization/ transcription cofactor  note seuss (SEU); FUNCTIONS IN: protein binding, transcription cofactor activity, protein heterodimerization activity, DNA binding; INVOLVED IN: multicellular organismal development, regulation of flower development; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62090.2); Has 74047 Blast hits to 23896 proteins in 937 species: Archae - 27; Bacteria - 2296; Metazoa - 27110; Fungi - 7596; Plants - 3096; Viruses - 691; Other Eukaryotes - 33231 (source: NCBI BLink).  protein_id AT1G43850.2p  transcript_id AT1G43850.2  protein_id AT1G43850.2p  transcript_id AT1G43850.2  
At1g43860	chr1:016624252	0.0	C/16624252-16624385,16623368-16623497,16623072-16623272,16622806-16622973,16622244-16622723	AT1G43860.1  CDS  gene_syn F28H19.11, F28H19_11  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family, Shwachman-Bodian-Diamond syndrome related (InterPro:IPR002140), Uncharacterised protein family UPF0023, conserved site (InterPro:IPR018023); Has 774 Blast hits to 765 proteins in 243 species: Archae - 139; Bacteria - 2; Metazoa - 226; Fungi - 186; Plants - 30; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink).  protein_id AT1G43860.1p  transcript_id AT1G43860.1  protein_id AT1G43860.1p  transcript_id AT1G43860.1  
At1g43870	chr1:016627094	0.0	W/16627094-16628095	AT1G43870.1  mRNA_TE_gene  pseudo  gene_syn F28H19.12, F28H19_12  note Transposable element gene, similar to myosin heavy chain-related [Arabidopsis thaliana] (TAIR:AT4G08113.1); similar to hypothetical protein 26.t00052 [Brassica oleracea] (GB:ABD65035.1); contains InterPro domain Protein of unknown function DUF1633; (InterPro:IPR012436)  
At1g43880	chr1:016628310	0.0	W/16628310-16629945	AT1G43880.1  mRNA_TE_gene  pseudo  gene_syn F28H19.18, F28H19_18  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30810.1); similar to hypothetical protein 26.t00052 [Brassica oleracea] (GB:ABD65035.1); contains InterPro domain Protein of unknown function DUF1633; (InterPro:IPR012436)  
At1g43883	chr1:016630704	0.0	C/16630704-16635864	AT1G43883.1  mRNA_TE_gene  pseudo  gene_syn F28H19.17  note Transposable element gene, gypsy-like retrotransposon family, has a 3.1e-193 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays)  
At1g43886	chr1:016638997	0.0	C/16638997-16645265	AT1G43886.1  mRNA_TE_gene  pseudo  gene_syn F28H19.14, F28H19_14  note Transposable element gene, copia-like retrotransposon family, has a 5.3e-165 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)  
At1g43890	chr1:016646934	0.0	W/16646934-16647069,16647157-16647225,16647726-16647791,16647871-16647992,16648072-16648200,16648279-16648395	AT1G43890.1  CDS  gene_syn ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, ATRAB-C1, ATRAB18, ATRABC1, F28H19.15, F28H19_15, RAB GTPASE HOMOLOG 18-1, RAB GTPASE HOMOLOG C1, RAB18-1, RABC1  gene ATRAB18  function ras-related small GTPase  go_component plasma membrane|GO:0005886|17644812|IDA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18); GTP binding  note ARABIDOPSIS RAB GTPASE HOMOLOG B18 (ATRAB18); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab18 (InterPro:IPR015598); BEST Arabidopsis thaliana protein match is: RABC2A (RAB GTPASE HOMOLOG C2A); GTP binding / GTP-dependent protein binding / myosin XI tail binding (TAIR:AT5G03530.1); Has 23554 Blast hits to 23521 proteins in 632 species: Archae - 9; Bacteria - 93; Metazoa - 13115; Fungi - 2882; Plants - 2228; Viruses - 19; Other Eukaryotes - 5208 (source: NCBI BLink).  protein_id AT1G43890.1p  transcript_id AT1G43890.1  protein_id AT1G43890.1p  transcript_id AT1G43890.1  
At1g43890	chr1:016646934	0.0	W/16646934-16647069,16647157-16647225,16647726-16647791,16647871-16647992,16648072-16648200,16648279-16648395	AT1G43890.2  CDS  gene_syn ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, ATRAB-C1, ATRAB18, ATRABC1, F28H19.15, F28H19_15, RAB GTPASE HOMOLOG 18-1, RAB GTPASE HOMOLOG C1, RAB18-1, RABC1  gene ATRAB18  function ras-related small GTPase  go_component plasma membrane|GO:0005886|17644812|IDA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18); GTP binding  note RAB GTPASE HOMOLOG C1 (RABC1); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab18 (InterPro:IPR015598); BEST Arabidopsis thaliana protein match is: RABC2A (RAB GTPASE HOMOLOG C2A); GTP binding / GTP-dependent protein binding / myosin XI tail binding (TAIR:AT5G03530.1); Has 23554 Blast hits to 23521 proteins in 632 species: Archae - 9; Bacteria - 93; Metazoa - 13115; Fungi - 2882; Plants - 2228; Viruses - 19; Other Eukaryotes - 5208 (source: NCBI BLink).  protein_id AT1G43890.2p  transcript_id AT1G43890.2  protein_id AT1G43890.2p  transcript_id AT1G43890.2  
At1g43890	chr1:016646934	0.0	W/16646934-16647069,16647157-16647225,16647726-16647791,16647871-16647992,16648072-16648200,16648279-16648395	AT1G43890.3  CDS  gene_syn ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, ATRAB-C1, ATRAB18, ATRABC1, F28H19.15, F28H19_15, RAB GTPASE HOMOLOG 18-1, RAB GTPASE HOMOLOG C1, RAB18-1, RABC1  gene ATRAB18  function ras-related small GTPase  go_component plasma membrane|GO:0005886|17644812|IDA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18); GTP binding  note RAB GTPASE HOMOLOG C1 (RABC1); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab18 (InterPro:IPR015598); BEST Arabidopsis thaliana protein match is: RABC2A (RAB GTPASE HOMOLOG C2A); GTP binding / GTP-dependent protein binding / myosin XI tail binding (TAIR:AT5G03530.1); Has 23554 Blast hits to 23521 proteins in 632 species: Archae - 9; Bacteria - 93; Metazoa - 13115; Fungi - 2882; Plants - 2228; Viruses - 19; Other Eukaryotes - 5208 (source: NCBI BLink).  protein_id AT1G43890.3p  transcript_id AT1G43890.3  protein_id AT1G43890.3p  transcript_id AT1G43890.3  
At1g43895	chr1:016648567	0.0	C/16648567-16649643	AT1G43895.1  pseudogenic_transcript  pseudo  note pseudogene, protein kinase -related  
At1g43897	chr1:016650295	0.0	C/16650295-16650804	AT1G43897.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to ORF-c, blastp match of 58% identity and 1.7e-32 P-value to GP|6069570|dbj|BAA85461.1||AB022081 ORF-c {Brassica rapa}  
At1g43900	chr1:016654045	0.0	W/16654045-16654379,16654464-16654606,16654687-16654785,16654870-16655028,16655110-16655196,16655296-16655387,16655473-16655544,16655682-16655810	AT1G43900.1  CDS  gene_syn F9C16.6, F9C16_6  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: WIN2 (HOPW1-1-INTERACTING 2); protein serine/threonine phosphatase (TAIR:AT4G31750.1); Has 5122 Blast hits to 5040 proteins in 519 species: Archae - 2; Bacteria - 723; Metazoa - 1403; Fungi - 557; Plants - 1322; Viruses - 9; Other Eukaryotes - 1106 (source: NCBI BLink).  protein_id AT1G43900.1p  transcript_id AT1G43900.1  protein_id AT1G43900.1p  transcript_id AT1G43900.1  
At1g43910	chr1:016657195	0.0	C/16657195-16657628,16656546-16657116,16656050-16656472	AT1G43910.1  CDS  gene_syn F9C16.7, F9C16_7  go_component endomembrane system|GO:0012505||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATP binding|GO:0005524||ISS  go_function ATPase activity|GO:0016887||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT3G50940.1); Has 14362 Blast hits to 13349 proteins in 1620 species: Archae - 730; Bacteria - 4401; Metazoa - 2535; Fungi - 1726; Plants - 1270; Viruses - 28; Other Eukaryotes - 3672 (source: NCBI BLink).  protein_id AT1G43910.1p  transcript_id AT1G43910.1  protein_id AT1G43910.1p  transcript_id AT1G43910.1  
At1g43920	chr1:016659990	0.0	W/16659990-16660756	AT1G43920.1  mRNA_TE_gene  pseudo  gene_syn F9C16.8, F9C16_8  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G07090.1); similar to GRF zinc finger containing protein [Brassica oleracea] (GB:ABD64950.1)  
At1g43930	chr1:016661000	0.0	C/16661000-16664004	AT1G43930.1  mRNA_TE_gene  pseudo  gene_syn F9C16.9, F9C16_9  note Transposable element gene, Mutator-like transposase family, has a 1.2e-56 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At1g43940	chr1:016666418	0.0	W/16666418-16667817	AT1G43940.1  mRNA_TE_gene  pseudo  gene_syn F9C16.10, F9C16_10  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42540.1); similar to Retrotransposon gag protein [Medicago truncatula] (GB:ABE81001.1)  
At1g43950	chr1:016673904	0.0	C/16673904-16673952,16673708-16673826,16673429-16673524,16673273-16673329,16673033-16673176,16672868-16672952,16672694-16672775,16672582-16672618	AT1G43950.1  CDS  gene_syn ARF23, AUXIN RESPONSE FACTOR 23, F9C16.11, F9C16_11  gene ARF23  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ARF23 (AUXIN RESPONSE FACTOR 23); transcription factor  note AUXIN RESPONSE FACTOR 23 (ARF23); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: ARF12 (AUXIN RESPONSE FACTOR 12); transcription factor (TAIR:AT1G34310.1); Has 530 Blast hits to 520 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 530; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G43950.1p  transcript_id AT1G43950.1  protein_id AT1G43950.1p  transcript_id AT1G43950.1  
At1g43960	chr1:016675520	0.0	W/16675520-16680354	AT1G43960.1  mRNA_TE_gene  pseudo  gene_syn F9C16.13  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At1g43970	chr1:016681269	0.0	W/16681269-16681400,16681471-16681851,16682350-16682515,16682893-16682933	AT1G43970.1  CDS  gene_syn F9C16.14, F9C16_14  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 13 Blast hits to 11 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G43970.1p  transcript_id AT1G43970.1  protein_id AT1G43970.1p  transcript_id AT1G43970.1  
At1g43980	chr1:016687711	0.0	C/16687711-16689502,16685832-16685941	AT1G43980.1  CDS  gene_syn F9C16.15, F9C16_15  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G13600.1); Has 12561 Blast hits to 4173 proteins in 69 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 4; Plants - 12395; Viruses - 0; Other Eukaryotes - 154 (source: NCBI BLink).  protein_id AT1G43980.1p  transcript_id AT1G43980.1  protein_id AT1G43980.1p  transcript_id AT1G43980.1  
At1g43990	chr1:016694926	0.0	C/16694926-16698219	AT1G43990.1  mRNA_TE_gene  pseudo  gene_syn F9C16.17  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At1g43995	chr1:016698563	0.0	C/16698563-16699056	AT1G43995.1  mRNA_TE_gene  pseudo  gene_syn F9C16.18, F9C16_18  note Transposable element gene, similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G22350.1); similar to Ribonuclease H [Medicago truncatula] (GB:ABD28505.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)  
At1g43997	chr1:016704096	0.0	C/16704096-16704586	AT1G43997.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G40087  
At1g44000	chr1:016709336	0.0	C/16709336-16709521,16708625-16708969,16708390-16708536,16708201-16708305	AT1G44000.1  CDS  gene_syn F9C16.20, F9C16_20  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11911.1); Has 133 Blast hits to 131 proteins in 47 species: Archae - 0; Bacteria - 53; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G44000.1p  transcript_id AT1G44000.1  protein_id AT1G44000.1p  transcript_id AT1G44000.1  
At1g44010	chr1:016714656	0.0	W/16714656-16714996,16715075-16715203,16715291-16715504	AT1G44010.1  CDS  gene_syn F9C16.22, F9C16_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15640.1); Has 124 Blast hits to 123 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G44010.1p  transcript_id AT1G44010.1  protein_id AT1G44010.1p  transcript_id AT1G44010.1  
At1g44020	chr1:016718247	0.0	C/16718247-16718656,16716692-16718015	AT1G44020.1  CDS  gene_syn F9C16.23, F9C16_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT1G44030.1); Has 1145 Blast hits to 473 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 4; Plants - 1136; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G44020.1p  transcript_id AT1G44020.1  protein_id AT1G44020.1p  transcript_id AT1G44020.1  
At1g44030	chr1:016724773	0.0	C/16724773-16726566	AT1G44030.1  CDS  gene_syn F9C16.25, F9C16_25  go_component chloroplast|GO:0009507||IEA  product DC1 domain-containing protein  note DC1 domain-containing protein; LOCATED IN: chloroplast; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT1G44020.1); Has 1188 Blast hits to 476 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 8; Fungi - 4; Plants - 1171; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G44030.1p  transcript_id AT1G44030.1  protein_id AT1G44030.1p  transcript_id AT1G44030.1  
At1g44040	chr1:016727608	0.0	C/16727608-16729008	AT1G44040.1  pseudogenic_transcript  pseudo  gene_syn F9C16.35  note pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 45% identity and 3.3e-84 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}  
At1g44045	chr1:016730937	0.0	C/16730937-16735967	AT1G44045.1  mRNA_TE_gene  pseudo  gene_syn F9C16.26  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 6.8e-19 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)  
At1g44050	chr1:016739921	0.0	W/16739921-16741513	AT1G44050.1  CDS  gene_syn F9C16.28, F9C16_28  go_process intracellular signaling cascade|GO:0007242||IEA  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; INVOLVED IN: intracellular signaling cascade; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT5G55780.1); Has 1276 Blast hits to 493 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 22; Fungi - 0; Plants - 1250; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G44050.1p  transcript_id AT1G44050.1  protein_id AT1G44050.1p  transcript_id AT1G44050.1  
At1g44060	chr1:016743177	0.0	C/16743177-16745699	AT1G44060.1  mRNA_TE_gene  pseudo  gene_syn F9C16.29, F9C16_29  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 2.0e-22 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At1g44070	chr1:016746726	0.0	C/16746726-16750580	AT1G44070.1  mRNA_TE_gene  pseudo  gene_syn T7O23.23  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 2.6e-142 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At1g44075	chr1:016752598	0.0	W/16752598-16752864	AT1G44075.1  mRNA_TE_gene  pseudo  gene_syn T7O23.27  note Transposable element gene, pseudogene, hypothetical protein  
At1g44080	chr1:016755280	0.0	C/16755280-16755670,16753944-16754596	AT1G44080.1  CDS  gene_syn T7O23.22  go_component cellular_component|GO:0005575||ND  product F-box protein-related / C-type lectin-related  note F-box protein-related / C-type lectin-related; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35733.1); Has 144 Blast hits to 139 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G44080.1p  transcript_id AT1G44080.1  protein_id AT1G44080.1p  transcript_id AT1G44080.1  
At1g44085	chr1:016758436	0.0	C/16758436-16758508,16758269-16758400,16758110-16758177	AT1G44085.1  CDS  gene_syn T7O23.21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G29033.1); Has 129 Blast hits to 116 proteins in 34 species: Archae - 0; Bacteria - 24; Metazoa - 30; Fungi - 4; Plants - 52; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT1G44085.1p  transcript_id AT1G44085.1  protein_id AT1G44085.1p  transcript_id AT1G44085.1  
At1g44090	chr1:016761933	0.0	C/16761933-16762486,16761239-16761563,16760677-16760955	AT1G44090.1  CDS  gene_syn ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 5, ATGA20OX5, GA2OX5, GIBBERELLIN 20-OXIDASE 5, T7O23.20, T7O23_20  gene ATGA20OX5  function Encodes a gibberellin 20-oxidase.  go_process gibberellin biosynthetic process|GO:0009686|18069939|TAS  go_function gibberellin 20-oxidase activity|GO:0045544|18069939|TAS  product ATGA20OX5 (ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 5); gibberellin 20-oxidase  note ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 5 (ATGA20OX5); FUNCTIONS IN: gibberellin 20-oxidase activity; INVOLVED IN: gibberellin biosynthetic process; EXPRESSED IN: fruit; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: YAP169; gibberellin 20-oxidase (TAIR:AT5G07200.1); Has 5667 Blast hits to 5650 proteins in 647 species: Archae - 0; Bacteria - 650; Metazoa - 128; Fungi - 623; Plants - 3030; Viruses - 0; Other Eukaryotes - 1236 (source: NCBI BLink).  protein_id AT1G44090.1p  transcript_id AT1G44090.1  protein_id AT1G44090.1p  transcript_id AT1G44090.1  
At1g44094	chr1:016763285	0.0	W/16763285-16763407	AT1G44094.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G44094.1p  transcript_id AT1G44094.1  protein_id AT1G44094.1p  transcript_id AT1G44094.1  
At1g44100	chr1:016767136	0.0	C/16767136-16767223,16766486-16766719,16766091-16766184,16765477-16765849,16764651-16765304	AT1G44100.1  CDS  gene_syn AAP5, AMINO ACID PERMEASE 5, T7O23.19, T7O23_19  gene AAP5  function amino acid permease 5  go_component membrane|GO:0016020||ISS  go_process basic amino acid transport|GO:0015802|12148530|TAS  go_function amino acid transmembrane transporter activity|GO:0015171|7608199|TAS  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  go_function basic amino acid transmembrane transporter activity|GO:0015174|12148530|IDA  product AAP5; amino acid transmembrane transporter/ basic amino acid transmembrane transporter  note AAP5; FUNCTIONS IN: basic amino acid transmembrane transporter activity, amino acid transmembrane transporter activity; INVOLVED IN: basic amino acid transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: AAP3; amino acid transmembrane transporter (TAIR:AT1G77380.1); Has 1495 Blast hits to 1489 proteins in 154 species: Archae - 0; Bacteria - 0; Metazoa - 489; Fungi - 182; Plants - 677; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink).  protein_id AT1G44100.1p  transcript_id AT1G44100.1  protein_id AT1G44100.1p  transcript_id AT1G44100.1  
At1g44110	chr1:016776994	0.0	C/16776994-16777182,16776475-16776760,16776251-16776393,16776075-16776167,16775703-16775989,16775420-16775603,16775202-16775336,16775035-16775100	AT1G44110.1  CDS  gene_syn CYCA1;1, Cyclin A1;1, T7O23.18, T7O23_18  gene CYCA1;1  go_component nucleus|GO:0005634||IEA  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase regulator activity|GO:0016538||ISS  product CYCA1;1 (Cyclin A1;1); cyclin-dependent protein kinase regulator  note Cyclin A1;1 (CYCA1;1); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: response to cyclopentenone, regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin (InterPro:IPR006670), G2/mitotic-specific cyclin A (InterPro:IPR015453), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400); BEST Arabidopsis thaliana protein match is: CYCA1;2 (CYCLIN A1;2); cyclin-dependent protein kinase regulator (TAIR:AT1G77390.1); Has 3605 Blast hits to 3449 proteins in 301 species: Archae - 0; Bacteria - 4; Metazoa - 1794; Fungi - 381; Plants - 768; Viruses - 35; Other Eukaryotes - 623 (source: NCBI BLink).  protein_id AT1G44110.1p  transcript_id AT1G44110.1  protein_id AT1G44110.1p  transcript_id AT1G44110.1  
At1g44120	chr1:016780610	0.0	W/16780610-16783672,16783765-16786318,16786389-16786846,16787065-16787181,16787262-16787414	AT1G44120.1  CDS  gene_syn T7O23.25, T7O23_25  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product C2 domain-containing protein / armadillo/beta-catenin repeat family protein  note C2 domain-containing protein / armadillo/beta-catenin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT1G77460.1); Has 1718 Blast hits to 980 proteins in 147 species: Archae - 2; Bacteria - 9; Metazoa - 372; Fungi - 108; Plants - 1080; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink).  protein_id AT1G44120.1p  transcript_id AT1G44120.1  protein_id AT1G44120.1p  transcript_id AT1G44120.1  
At1g44130	chr1:016789179	0.0	C/16789179-16789318,16788970-16789087,16788664-16788890,16788355-16788582,16788124-16788262,16787849-16788046,16787696-16787768,16787508-16787602	AT1G44130.1  CDS  gene_syn T7O23.17, T7O23_17  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  product nucellin protein, putative  note nucellin protein, putative; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plant-type cell wall; EXPRESSED IN: stem, embryo, pedicel, stamen; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: nucellin protein, putative (TAIR:AT1G77480.2); Has 1109 Blast hits to 1105 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 30; Fungi - 22; Plants - 1004; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT1G44130.1p  transcript_id AT1G44130.1  protein_id AT1G44130.1p  transcript_id AT1G44130.1  
At1g44140	chr1:016791284	0.0	W/16791284-16791703	AT1G44140.1  mRNA_TE_gene  pseudo  gene_syn T7O23.28  note Transposable element gene, pseudogene, hypothetical protein  
At1g44150	chr1:016792695	0.0	W/16792695-16793084	AT1G44150.1  pseudogenic_transcript  pseudo  gene_syn T7O23.26  note pseudogene, hypothetical protein  
At1g44160	chr1:016795032	0.0	W/16795032-16795235,16795315-16795739,16795832-16796276	AT1G44160.1  CDS  gene_syn T7O23.16, T7O23_16  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_process protein folding|GO:0006457||ISS  product DNAJ chaperone C-terminal domain-containing protein  note DNAJ chaperone C-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ chaperone C-terminal domain-containing protein (TAIR:AT1G11040.1); Has 8675 Blast hits to 8673 proteins in 1851 species: Archae - 73; Bacteria - 3952; Metazoa - 872; Fungi - 418; Plants - 407; Viruses - 2; Other Eukaryotes - 2951 (source: NCBI BLink).  protein_id AT1G44160.1p  transcript_id AT1G44160.1  protein_id AT1G44160.1p  transcript_id AT1G44160.1  
At1g44170	chr1:016798551	0.0	C/16798551-16798574,16798371-16798439,16798197-16798293,16797905-16798111,16797715-16797830,16797519-16797623,16797274-16797446,16797112-16797202,16796883-16797032,16796564-16796797	AT1G44170.3  CDS  gene_syn ALDEHYDE DEHYDROGENASE 3H1, ALDEHYDE DEHYDROGENASE 4, ALDH3H1, ALDH4, T7O23.15, T7O23_15  gene ALDH3H1  function Encodes a protein similar to the aldehyde dehydrogenase cp-ADH from C.plantagineum. Constitutively expressed at low levels.  go_component membrane|GO:0016020|17432890|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component plastid|GO:0009536|11849595|ISS  go_process response to desiccation|GO:0009269|15830124|IEP  go_process response to salt stress|GO:0009651|15830124|IEP  go_process response to abscisic acid stimulus|GO:0009737|15830124|IEP  go_function 3-chloroallyl aldehyde dehydrogenase activity|GO:0004028|11849595|ISS  go_function 3-chloroallyl aldehyde dehydrogenase activity|GO:0004028||ISS  go_function aldehyde dehydrogenase (NAD) activity|GO:0004029|11849595|ISS  product ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD)  note ALDEHYDE DEHYDROGENASE 3H1 (ALDH3H1); FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, aldehyde dehydrogenase (NAD) activity; INVOLVED IN: response to salt stress, response to desiccation, response to abscisic acid stimulus; LOCATED IN: endoplasmic reticulum, plastid, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase NAD(P)-dependent (InterPro:IPR012394), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: ALDH3I1 (ALDEHYDE DEHYDROGENASE 3|1); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) (TAIR:AT4G34240.1); Has 37378 Blast hits to 37333 proteins in 1746 species: Archae - 240; Bacteria - 18326; Metazoa - 2111; Fungi - 1322; Plants - 553; Viruses - 0; Other Eukaryotes - 14826 (source: NCBI BLink).  protein_id AT1G44170.3p  transcript_id AT1G44170.3  protein_id AT1G44170.3p  transcript_id AT1G44170.3  
At1g44170	chr1:016799819	0.0	C/16799819-16800031,16798371-16798439,16798197-16798293,16797905-16798111,16797715-16797830,16797519-16797623,16797274-16797446,16797112-16797202,16796883-16797032,16796564-16796797	AT1G44170.1  CDS  gene_syn ALDEHYDE DEHYDROGENASE 3H1, ALDEHYDE DEHYDROGENASE 4, ALDH3H1, ALDH4, T7O23.15, T7O23_15  gene ALDH3H1  function Encodes a protein similar to the aldehyde dehydrogenase cp-ADH from C.plantagineum. Constitutively expressed at low levels.  go_component vacuole|GO:0005773|15539469|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component plastid|GO:0009536|11849595|ISS  go_process response to desiccation|GO:0009269|15830124|IEP  go_process response to salt stress|GO:0009651|15830124|IEP  go_process response to abscisic acid stimulus|GO:0009737|15830124|IEP  go_function 3-chloroallyl aldehyde dehydrogenase activity|GO:0004028|11849595|ISS  go_function 3-chloroallyl aldehyde dehydrogenase activity|GO:0004028||ISS  go_function aldehyde dehydrogenase (NAD) activity|GO:0004029|11849595|ISS  product ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD)  note ALDEHYDE DEHYDROGENASE 3H1 (ALDH3H1); FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, aldehyde dehydrogenase (NAD) activity; INVOLVED IN: response to salt stress, response to desiccation, response to abscisic acid stimulus; LOCATED IN: endoplasmic reticulum, plastid, vacuole, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase NAD(P)-dependent (InterPro:IPR012394), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: ALDH3I1 (ALDEHYDE DEHYDROGENASE 3|1); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) (TAIR:AT4G34240.1); Has 37578 Blast hits to 37530 proteins in 1748 species: Archae - 240; Bacteria - 18361; Metazoa - 2127; Fungi - 1327; Plants - 557; Viruses - 0; Other Eukaryotes - 14966 (source: NCBI BLink).  protein_id AT1G44170.1p  transcript_id AT1G44170.1  protein_id AT1G44170.1p  transcript_id AT1G44170.1  
At1g44170	chr1:016799819	0.0	C/16799819-16800031,16798371-16798439,16798197-16798293,16797905-16798111,16797715-16797830,16797519-16797623,16797274-16797446,16797112-16797202,16796883-16797032,16796564-16796797	AT1G44170.2  CDS  gene_syn ALDEHYDE DEHYDROGENASE 3H1, ALDEHYDE DEHYDROGENASE 4, ALDH3H1, ALDH4, T7O23.15, T7O23_15  gene ALDH3H1  function Encodes a protein similar to the aldehyde dehydrogenase cp-ADH from C.plantagineum. Constitutively expressed at low levels.  go_component vacuole|GO:0005773|15539469|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component plastid|GO:0009536|11849595|ISS  go_process response to desiccation|GO:0009269|15830124|IEP  go_process response to salt stress|GO:0009651|15830124|IEP  go_process response to abscisic acid stimulus|GO:0009737|15830124|IEP  go_function 3-chloroallyl aldehyde dehydrogenase activity|GO:0004028|11849595|ISS  go_function 3-chloroallyl aldehyde dehydrogenase activity|GO:0004028||ISS  go_function aldehyde dehydrogenase (NAD) activity|GO:0004029|11849595|ISS  product ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD)  note ALDEHYDE DEHYDROGENASE 3H1 (ALDH3H1); FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, aldehyde dehydrogenase (NAD) activity; INVOLVED IN: response to salt stress, response to desiccation, response to abscisic acid stimulus; LOCATED IN: endoplasmic reticulum, plastid, vacuole, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase NAD(P)-dependent (InterPro:IPR012394), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: ALDH3I1 (ALDEHYDE DEHYDROGENASE 3|1); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) (TAIR:AT4G34240.1); Has 37578 Blast hits to 37530 proteins in 1748 species: Archae - 240; Bacteria - 18361; Metazoa - 2127; Fungi - 1327; Plants - 557; Viruses - 0; Other Eukaryotes - 14966 (source: NCBI BLink).  protein_id AT1G44170.2p  transcript_id AT1G44170.2  protein_id AT1G44170.2p  transcript_id AT1G44170.2  
At1g44180	chr1:016809568	0.0	C/16809568-16810413,16809115-16809252,16808415-16808654,16808239-16808322	AT1G44180.1  CDS  gene_syn T7O23.14, T7O23_14  go_component cytoplasm|GO:0005737||IEA  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_process amino acid metabolic process|GO:0006520||IEA  go_function aminoacylase activity|GO:0004046||IEA  go_function metallopeptidase activity|GO:0008237||IEA  go_function aminoacylase activity|GO:0004046||ISS  product aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative  note aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative; FUNCTIONS IN: metallopeptidase activity, aminoacylase activity; INVOLVED IN: amino acid metabolic process, proteolysis; LOCATED IN: endomembrane system, cytoplasm; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Peptidase M20 (InterPro:IPR002933), N-acyl-L-amino-acid amidohydrolase (InterPro:IPR010159); BEST Arabidopsis thaliana protein match is: aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative (TAIR:AT1G44820.1); Has 2772 Blast hits to 2769 proteins in 748 species: Archae - 87; Bacteria - 1486; Metazoa - 371; Fungi - 146; Plants - 39; Viruses - 2; Other Eukaryotes - 641 (source: NCBI BLink).  protein_id AT1G44180.1p  transcript_id AT1G44180.1  protein_id AT1G44180.1p  transcript_id AT1G44180.1  
At1g44191	chr1:016813654	0.0	C/16813654-16814733	AT1G44191.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50580.1); Has 444089 Blast hits to 108072 proteins in 2617 species: Archae - 1270; Bacteria - 84476; Metazoa - 183958; Fungi - 60716; Plants - 40224; Viruses - 12009; Other Eukaryotes - 61436 (source: NCBI BLink).  protein_id AT1G44191.1p  transcript_id AT1G44191.1  protein_id AT1G44191.1p  transcript_id AT1G44191.1  
At1g44224	chr1:016821061	0.0	C/16821061-16821756	AT1G44224.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G50570.1); Has 6927 Blast hits to 1862 proteins in 283 species: Archae - 0; Bacteria - 2144; Metazoa - 2584; Fungi - 482; Plants - 299; Viruses - 94; Other Eukaryotes - 1324 (source: NCBI BLink).  protein_id AT1G44224.1p  transcript_id AT1G44224.1  protein_id AT1G44224.1p  transcript_id AT1G44224.1  
At1g44286	chr1:016823438	0.0	W/16823438-16823822	AT1G44286.1  pseudogenic_transcript  pseudo  gene_syn T18F15.18  note pseudogene, putative delta-aminolevulinic acid dehydratase, blastp match of 47% identity and 7.4e-06 P-value to PIR|A50000|A50000 porphobilinogen synthase (EC 4.2.1.24) precursor - spinach  
At1g44318	chr1:016831016	0.0	W/16831016-16831252,16831367-16831478,16831651-16831724,16831899-16831967,16832084-16832167,16832256-16832325,16832412-16832467,16832537-16832658,16832741-16832794,16833574-16833916	AT1G44318.1  CDS  gene_syn T18F15.10, T18F15_10, hemb2  gene hemb2  go_function catalytic activity|GO:0003824||IEA  go_function porphobilinogen synthase activity|GO:0004655||IEA  go_function metal ion binding|GO:0046872||IEA  go_process porphyrin biosynthetic process|GO:0006779|8016269|TAS  go_function porphobilinogen synthase activity|GO:0004655||ISS  product hemb2; catalytic/ metal ion binding / porphobilinogen synthase  note hemb2; FUNCTIONS IN: porphobilinogen synthase activity, catalytic activity, metal ion binding; INVOLVED IN: porphyrin biosynthetic process; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Tetrapyrrole biosynthesis, porphobilinogen synthase (InterPro:IPR001731); BEST Arabidopsis thaliana protein match is: HEMB1; catalytic/ metal ion binding / porphobilinogen synthase (TAIR:AT1G69740.2); Has 5064 Blast hits to 5064 proteins in 1236 species: Archae - 100; Bacteria - 2156; Metazoa - 142; Fungi - 105; Plants - 54; Viruses - 0; Other Eukaryotes - 2507 (source: NCBI BLink).  protein_id AT1G44318.1p  transcript_id AT1G44318.1  protein_id AT1G44318.1p  transcript_id AT1G44318.1  
At1g44350	chr1:016837731	0.0	C/16837731-16838201,16836939-16837064,16836075-16836374,16835871-16835999,16834749-16835117	AT1G44350.1  CDS  gene_syn IAA-LEUCINE RESISTANT (ILR)-LIKE GENE 6, ILL6, T18F15.9, T18F15_9  gene ILL6  function encodes a protein similar to IAA amino acid conjugate hydrolase.  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||ISS  go_process auxin metabolic process|GO:0009850|11923288|ISS  go_function metallopeptidase activity|GO:0008237||ISS  go_function IAA-amino acid conjugate hydrolase activity|GO:0010178|11923288|ISS  product ILL6; IAA-amino acid conjugate hydrolase/ metallopeptidase  note ILL6; FUNCTIONS IN: IAA-amino acid conjugate hydrolase activity, metallopeptidase activity; INVOLVED IN: proteolysis, auxin metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M20 (InterPro:IPR002933), Peptidase M20, dimerisation (InterPro:IPR011650), Peptidase M20D, mername-AA028/carboxypeptidase Ss1 (InterPro:IPR017439), Peptidase M20D, amidohydrolase (InterPro:IPR010168); BEST Arabidopsis thaliana protein match is: IAR3 (IAA-ALANINE RESISTANT 3); IAA-Ala conjugate hydrolase/ metallopeptidase (TAIR:AT1G51760.1); Has 7038 Blast hits to 7033 proteins in 990 species: Archae - 62; Bacteria - 4091; Metazoa - 61; Fungi - 156; Plants - 188; Viruses - 0; Other Eukaryotes - 2480 (source: NCBI BLink).  protein_id AT1G44350.1p  transcript_id AT1G44350.1  protein_id AT1G44350.1p  transcript_id AT1G44350.1  
At1g44382	chr1:016846735	0.0	W/16846735-16847325	AT1G44382.1  pseudogenic_transcript  pseudo  gene_syn T18F15.19  note pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 48% identity and 5.3e-35 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}  
At1g44414	chr1:016847781	0.0	W/16847781-16848086	AT1G44414.1  CDS  gene_syn T18F15.8, T18F15_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, carpel; EXPRESSED DURING: petal differentiation and expansion stage; Has 14 Blast hits to 14 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G44414.1p  transcript_id AT1G44414.1  protein_id AT1G44414.1p  transcript_id AT1G44414.1  
At1g44446	chr1:016851066	0.0	C/16851066-16851152,16850701-16850937,16850328-16850432,16849974-16850249,16849744-16849891,16849484-16849668,16849132-16849395	AT1G44446.3  CDS  gene_syn ARABIDOPSIS THALIANA CHLOROPHYLL A OXYGENASE, ATCAO, CAO, CH1, CHLORINA 1, CHLOROPHYLL A OXYGENASE, CHLOROPHYLL B SYNTHASE, T18F15.7, T18F15_7  gene CH1  function Encodes chlorophyllide <i>a</i> oxygenase which converts chlorophyllide <i>a</i> to chlorophyllide <i>b</i> by catalyzing two successive hydroxylations at the 7-methyl group of chlorophyllide <i>a</i> . Mutants are deficient in pigments that associate with thylakoid membrane proteins, lacking chlorophyll <i>b</i> and light-harvesting proteins of photosystem II. The protein was shown through cross-linking experiments to interact with Toc75, Toc34, Tic40, Tic20 and Tic22.  go_component chloroplast|GO:0009507|10758481|ISS  go_component chloroplast|GO:0009507|15805480|IDA  go_component chloroplast inner membrane|GO:0009706|16537436|IDA  go_component thylakoid membrane|GO:0042651|16537436|IDA  go_process chlorophyll biosynthetic process|GO:0015995|10468639|IMP  go_process chlorophyll biosynthetic process|GO:0015995|10758481|IMP  go_function chlorophyllide a oxygenase activity|GO:0010277|10468639|IMP  go_function chlorophyllide a oxygenase activity|GO:0010277|10758481|IDA  product CH1 (CHLORINA 1); chlorophyllide a oxygenase  note CHLORINA 1 (CH1); FUNCTIONS IN: chlorophyllide a oxygenase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast, chloroplast inner membrane, thylakoid membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site (InterPro:IPR015881), Rieske [2Fe-2S] iron-sulphur domain (InterPro:IPR017941), Rieske [2Fe-2S] region (InterPro:IPR005806); BEST Arabidopsis thaliana protein match is: TIC55 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 55); 2 iron, 2 sulfur cluster binding / electron carrier/ oxidoreductase (TAIR:AT2G24820.1); Has 4630 Blast hits to 4630 proteins in 614 species: Archae - 6; Bacteria - 2739; Metazoa - 78; Fungi - 28; Plants - 280; Viruses - 0; Other Eukaryotes - 1499 (source: NCBI BLink).  protein_id AT1G44446.3p  transcript_id AT1G44446.3  protein_id AT1G44446.3p  transcript_id AT1G44446.3  
At1g44446	chr1:016851066	0.0	C/16851066-16851152,16850701-16850937,16850328-16850432,16849974-16850249,16849744-16849891,16849484-16849668,16849283-16849395,16848822-16849206	AT1G44446.2  CDS  gene_syn ARABIDOPSIS THALIANA CHLOROPHYLL A OXYGENASE, ATCAO, CAO, CH1, CHLORINA 1, CHLOROPHYLL A OXYGENASE, CHLOROPHYLL B SYNTHASE, T18F15.7, T18F15_7  gene CH1  function Encodes chlorophyllide <i>a</i> oxygenase which converts chlorophyllide <i>a</i> to chlorophyllide <i>b</i> by catalyzing two successive hydroxylations at the 7-methyl group of chlorophyllide <i>a</i> . Mutants are deficient in pigments that associate with thylakoid membrane proteins, lacking chlorophyll <i>b</i> and light-harvesting proteins of photosystem II. The protein was shown through cross-linking experiments to interact with Toc75, Toc34, Tic40, Tic20 and Tic22.  go_component chloroplast|GO:0009507|10758481|ISS  go_component chloroplast|GO:0009507|15805480|IDA  go_component chloroplast inner membrane|GO:0009706|16537436|IDA  go_component thylakoid membrane|GO:0042651|16537436|IDA  go_process chlorophyll biosynthetic process|GO:0015995|10468639|IMP  go_process chlorophyll biosynthetic process|GO:0015995|10758481|IMP  go_function chlorophyllide a oxygenase activity|GO:0010277|10468639|IMP  go_function chlorophyllide a oxygenase activity|GO:0010277|10758481|IDA  product CH1 (CHLORINA 1); chlorophyllide a oxygenase  note CHLORINA 1 (CH1); FUNCTIONS IN: chlorophyllide a oxygenase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast, chloroplast inner membrane, thylakoid membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site (InterPro:IPR015881), Rieske [2Fe-2S] iron-sulphur domain (InterPro:IPR017941), Rieske [2Fe-2S] region (InterPro:IPR005806), Pheophorbide a oxygenase (InterPro:IPR013626), Aminotransferase, class-II, pyridoxal-phosphate binding site (InterPro:IPR001917); BEST Arabidopsis thaliana protein match is: TIC55 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 55); 2 iron, 2 sulfur cluster binding / electron carrier/ oxidoreductase (TAIR:AT2G24820.1); Has 4655 Blast hits to 4655 proteins in 617 species: Archae - 6; Bacteria - 2760; Metazoa - 78; Fungi - 28; Plants - 281; Viruses - 0; Other Eukaryotes - 1502 (source: NCBI BLink).  protein_id AT1G44446.2p  transcript_id AT1G44446.2  protein_id AT1G44446.2p  transcript_id AT1G44446.2  
At1g44446	chr1:016851066	0.0	C/16851066-16851152,16850701-16850937,16850328-16850432,16849974-16850249,16849744-16849891,16849484-16849668,16849283-16849395,16848912-16849206,16848664-16848828	AT1G44446.1  CDS  gene_syn ARABIDOPSIS THALIANA CHLOROPHYLL A OXYGENASE, ATCAO, CAO, CH1, CHLORINA 1, CHLOROPHYLL A OXYGENASE, CHLOROPHYLL B SYNTHASE, T18F15.7, T18F15_7  gene CH1  function Encodes chlorophyllide <i>a</i> oxygenase which converts chlorophyllide <i>a</i> to chlorophyllide <i>b</i> by catalyzing two successive hydroxylations at the 7-methyl group of chlorophyllide <i>a</i> . Mutants are deficient in pigments that associate with thylakoid membrane proteins, lacking chlorophyll <i>b</i> and light-harvesting proteins of photosystem II. The protein was shown through cross-linking experiments to interact with Toc75, Toc34, Tic40, Tic20 and Tic22.  go_component chloroplast|GO:0009507|10758481|ISS  go_component chloroplast|GO:0009507|15805480|IDA  go_component chloroplast inner membrane|GO:0009706|16537436|IDA  go_component thylakoid membrane|GO:0042651|16537436|IDA  go_process chlorophyll biosynthetic process|GO:0015995|10468639|IMP  go_process chlorophyll biosynthetic process|GO:0015995|10758481|IMP  go_function chlorophyllide a oxygenase activity|GO:0010277|10468639|IMP  go_function chlorophyllide a oxygenase activity|GO:0010277|10758481|IDA  product CH1 (CHLORINA 1); chlorophyllide a oxygenase  note CHLORINA 1 (CH1); FUNCTIONS IN: chlorophyllide a oxygenase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast, chloroplast inner membrane, thylakoid membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site (InterPro:IPR015881), Rieske [2Fe-2S] region (InterPro:IPR005806), Rieske [2Fe-2S] iron-sulphur domain (InterPro:IPR017941), Pheophorbide a oxygenase (InterPro:IPR013626); BEST Arabidopsis thaliana protein match is: TIC55 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 55); 2 iron, 2 sulfur cluster binding / electron carrier/ oxidoreductase (TAIR:AT2G24820.1); Has 4743 Blast hits to 4742 proteins in 617 species: Archae - 6; Bacteria - 2845; Metazoa - 78; Fungi - 28; Plants - 282; Viruses - 0; Other Eukaryotes - 1504 (source: NCBI BLink).  protein_id AT1G44446.1p  transcript_id AT1G44446.1  protein_id AT1G44446.1p  transcript_id AT1G44446.1  
At1g44478	chr1:016853200	0.0	C/16853200-16853238,16852978-16853085,16852773-16852878,16852341-16852669	AT1G44478.1  CDS  gene_syn T18F15.6, T18F15_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: CYP59 (CYCLOPHILIN 59); RNA binding / nucleic acid binding / peptidyl-prolyl cis-trans isomerase (TAIR:AT1G53720.1); Has 293 Blast hits to 276 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 216; Fungi - 11; Plants - 38; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT1G44478.1p  transcript_id AT1G44478.1  protein_id AT1G44478.1p  transcript_id AT1G44478.1  
At1g44510	chr1:016853447	0.0	C/16853447-16857835	AT1G44510.1  mRNA_TE_gene  pseudo  gene_syn T18F15.5, T18F15_5  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)  
At1g44542	chr1:016866171	0.0	C/16866171-16866573,16866040-16866084,16865869-16865941,16865670-16865767,16865517-16865587,16865145-16865270	AT1G44542.1  CDS  gene_syn T18F15.4, T18F15_4  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product cyclase family protein  note cyclase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Putative cyclase (InterPro:IPR007325); BEST Arabidopsis thaliana protein match is: cyclase family protein (TAIR:AT4G34180.1); Has 776 Blast hits to 776 proteins in 299 species: Archae - 51; Bacteria - 580; Metazoa - 30; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT1G44542.1p  transcript_id AT1G44542.1  protein_id AT1G44542.1p  transcript_id AT1G44542.1  
At1g44575	chr1:016871768	0.0	W/16871768-16871959,16872044-16872157,16872237-16872480,16872947-16873194	AT1G44575.1  CDS  gene_syn CP22, NONPHOTOCHEMICAL QUENCHING, NPQ4, PHOTOSYSTEM II SUBUNIT S, PSBS, PSII-S, T18F15.3, T18F15_3  gene NPQ4  function Encoding PSII-S (CP22), a ubiquitous pigment-binding protein associated with photosystem II (PSII) of higher plants. Involved in nonphotochemical quenching rather than in photosynthesis. Mutant has a normal violaxanthin cycle but has a limited capacity of quenching singlet excited chlorophylls and is tolerant to lipid peroxidation.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component PSII associated light-harvesting complex II|GO:0009517|10667783|TAS  go_process nonphotochemical quenching|GO:0010196|10667783|IMP  go_process nonphotochemical quenching|GO:0010196|16545380|IMP  go_function chlorophyll binding|GO:0016168|10667783|TAS  go_function xanthophyll binding|GO:0051738|10667783|TAS  product NPQ4 (NONPHOTOCHEMICAL QUENCHING); chlorophyll binding / xanthophyll binding  note NONPHOTOCHEMICAL QUENCHING (NPQ4); FUNCTIONS IN: chlorophyll binding, xanthophyll binding; INVOLVED IN: nonphotochemical quenching; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, PSII associated light-harvesting complex II, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); Has 175 Blast hits to 139 proteins in 47 species: Archae - 0; Bacteria - 29; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G44575.1p  transcript_id AT1G44575.1  protein_id AT1G44575.1p  transcript_id AT1G44575.1  
At1g44575	chr1:016871768	0.0	W/16871768-16871959,16872044-16872157,16872237-16872548	AT1G44575.2  CDS  gene_syn CP22, NONPHOTOCHEMICAL QUENCHING, NPQ4, PHOTOSYSTEM II SUBUNIT S, PSBS, PSII-S, T18F15.3, T18F15_3  gene NPQ4  function Encoding PSII-S (CP22), a ubiquitous pigment-binding protein associated with photosystem II (PSII) of higher plants. Involved in nonphotochemical quenching rather than in photosynthesis. Mutant has a normal violaxanthin cycle but has a limited capacity of quenching singlet excited chlorophylls and is tolerant to lipid peroxidation.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component PSII associated light-harvesting complex II|GO:0009517|10667783|TAS  go_process nonphotochemical quenching|GO:0010196|10667783|IMP  go_process nonphotochemical quenching|GO:0010196|16545380|IMP  go_function chlorophyll binding|GO:0016168|10667783|TAS  go_function xanthophyll binding|GO:0051738|10667783|TAS  product NPQ4 (NONPHOTOCHEMICAL QUENCHING); chlorophyll binding / xanthophyll binding  note NONPHOTOCHEMICAL QUENCHING (NPQ4); FUNCTIONS IN: chlorophyll binding, xanthophyll binding; INVOLVED IN: nonphotochemical quenching; LOCATED IN: chloroplast thylakoid membrane, chloroplast, PSII associated light-harvesting complex II, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); Has 193 Blast hits to 132 proteins in 44 species: Archae - 0; Bacteria - 23; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G44575.2p  transcript_id AT1G44575.2  protein_id AT1G44575.2p  transcript_id AT1G44575.2  
At1g44608	chr1:016875976	0.0	C/16875976-16876258,16875249-16875496	AT1G44608.1  CDS  gene_syn T18F15.16, T18F15_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21830.1); Has 29 Blast hits to 29 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G44608.1p  transcript_id AT1G44608.1  protein_id AT1G44608.1p  transcript_id AT1G44608.1  
At1g44641	chr1:016879449	0.0	W/16879449-16879642	AT1G44641.1  mRNA_TE_gene  pseudo  gene_syn T18F15.20  note Transposable element gene, pseudogene, hypothetical protein  
At1g44674	chr1:016881891	0.0	W/16881891-16881950,16882038-16882133	AT1G44674.1  CDS  gene_syn T18F15.2, T18F15_2  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458); BEST Arabidopsis thaliana protein match is: bZIP family transcription factor (TAIR:AT1G27000.1); Has 33 Blast hits to 33 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G44674.1p  transcript_id AT1G44674.1  protein_id AT1G44674.1p  transcript_id AT1G44674.1  
At1g44707	chr1:016882725	0.0	C/16882725-16882942	AT1G44707.1  mRNA_TE_gene  pseudo  gene_syn T18F15.15  note Transposable element gene, pseudogene, hypothetical protein  
At1g44740	chr1:016887404	0.0	W/16887404-16887574,16887684-16887781,16887975-16888063,16888220-16888340,16888395-16888467,16888579-16888727,16888815-16888885,16888992-16889155	AT1G44740.1  CDS  gene_syn T12C22.1, T12C22_1  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: leaf whorl, embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 3 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G44740.1p  transcript_id AT1G44740.1  protein_id AT1G44740.1p  transcript_id AT1G44740.1  
At1g44750	chr1:016892688	0.0	W/16892688-16892730,16894072-16895168	AT1G44750.1  CDS  gene_syn ARABIDOPSIS THALIANA PURINE PERMEASE 11, ATPUP11, T12C22.2, T12C22_2  gene ATPUP11  function Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.  go_component membrane|GO:0016020|10662864|TAS  go_process purine transport|GO:0006863|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345||ISS  product ATPUP11; purine transmembrane transporter  note ATPUP11; FUNCTIONS IN: purine transmembrane transporter activity; INVOLVED IN: purine transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: ATPUP13; purine transmembrane transporter (TAIR:AT4G08700.1); Has 249 Blast hits to 242 proteins in 29 species: Archae - 0; Bacteria - 13; Metazoa - 8; Fungi - 12; Plants - 210; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G44750.1p  transcript_id AT1G44750.1  protein_id AT1G44750.1p  transcript_id AT1G44750.1  
At1g44750	chr1:016893825	0.0	W/16893825-16893831,16894072-16895168	AT1G44750.2  CDS  gene_syn ARABIDOPSIS THALIANA PURINE PERMEASE 11, ATPUP11, T12C22.2, T12C22_2  gene ATPUP11  function Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.  go_component membrane|GO:0016020|10662864|TAS  go_process purine transport|GO:0006863|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345||ISS  product ATPUP11; purine transmembrane transporter  note ATPUP11; FUNCTIONS IN: purine transmembrane transporter activity; INVOLVED IN: purine transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: ATPUP13; purine transmembrane transporter (TAIR:AT4G08700.1); Has 249 Blast hits to 242 proteins in 29 species: Archae - 0; Bacteria - 13; Metazoa - 8; Fungi - 12; Plants - 210; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G44750.2p  transcript_id AT1G44750.2  protein_id AT1G44750.2p  transcript_id AT1G44750.2  
At1g44750	chr1:016894257	0.0	W/16894257-16895168	AT1G44750.3  CDS  gene_syn ARABIDOPSIS THALIANA PURINE PERMEASE 11, ATPUP11, T12C22.2, T12C22_2  gene ATPUP11  function Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.  go_component membrane|GO:0016020|10662864|TAS  go_process purine transport|GO:0006863|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345||ISS  product ATPUP11; purine transmembrane transporter  note ATPUP11; FUNCTIONS IN: purine transmembrane transporter activity; INVOLVED IN: purine transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: ATPUP13; purine transmembrane transporter (TAIR:AT4G08700.1); Has 242 Blast hits to 236 proteins in 28 species: Archae - 0; Bacteria - 12; Metazoa - 8; Fungi - 12; Plants - 204; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G44750.3p  transcript_id AT1G44750.3  protein_id AT1G44750.3p  transcript_id AT1G44750.3  
At1g44760	chr1:016898059	0.0	C/16898059-16898427,16897136-16897257,16896894-16897044	AT1G44760.1  CDS  gene_syn T12C22.3, T12C22_3  go_process response to stress|GO:0006950||IEA  go_function molecular_function|GO:0003674||ND  product universal stress protein (USP) family protein  note universal stress protein (USP) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729); BEST Arabidopsis thaliana protein match is: universal stress protein (USP) family protein (TAIR:AT5G17390.1); Has 112 Blast hits to 112 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 110; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G44760.1p  transcript_id AT1G44760.1  protein_id AT1G44760.1p  transcript_id AT1G44760.1  
At1g44770	chr1:016909143	0.0	C/16909143-16909409,16908943-16909060,16908655-16908863,16908529-16908556,16907995-16908103,16907834-16907915	AT1G44770.2  CDS  gene_syn T12C22.4, T12C22_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49710.3); Has 44 Blast hits to 44 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G44770.2p  transcript_id AT1G44770.2  protein_id AT1G44770.2p  transcript_id AT1G44770.2  
At1g44770	chr1:016909143	0.0	C/16909143-16909409,16908943-16909060,16908655-16908866,16908529-16908556,16907995-16908103,16907834-16907915	AT1G44770.1  CDS  gene_syn T12C22.4, T12C22_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49710.3); Has 43 Blast hits to 43 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G44770.1p  transcript_id AT1G44770.1  protein_id AT1G44770.1p  transcript_id AT1G44770.1  
At1g44780	chr1:016909753	0.0	W/16909753-16909880,16910090-16910195,16910287-16910537,16910628-16910733,16910815-16911132,16911210-16911289,16911378-16911502,16911707-16911952,16912029-16912060	AT1G44780.1  CDS  gene_syn T12C22.5, T12C22_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08310.1); Has 18070 Blast hits to 9909 proteins in 570 species: Archae - 24; Bacteria - 728; Metazoa - 9032; Fungi - 1421; Plants - 486; Viruses - 182; Other Eukaryotes - 6197 (source: NCBI BLink).  protein_id AT1G44780.1p  transcript_id AT1G44780.1  protein_id AT1G44780.1p  transcript_id AT1G44780.1  
At1g44780	chr1:016909753	0.0	W/16909753-16909880,16910090-16910195,16910287-16910537,16910628-16910733,16910815-16911132,16911213-16911289,16911378-16911502,16911707-16911952,16912029-16912060	AT1G44780.2  CDS  gene_syn T12C22.5, T12C22_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08310.1); Has 17592 Blast hits to 9609 proteins in 555 species: Archae - 26; Bacteria - 689; Metazoa - 8787; Fungi - 1332; Plants - 477; Viruses - 174; Other Eukaryotes - 6107 (source: NCBI BLink).  protein_id AT1G44780.2p  transcript_id AT1G44780.2  protein_id AT1G44780.2p  transcript_id AT1G44780.2  
At1g44790	chr1:016913474	0.0	C/16913474-16913582,16913313-16913389,16913166-16913219,16913039-16913095,16912925-16912965,16912770-16912841,16912610-16912689,16912403-16912512	AT1G44790.1  CDS  gene_syn T12C22.6, T12C22_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ChaC-like family protein  note ChaC-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ChaC-like protein (InterPro:IPR006840); BEST Arabidopsis thaliana protein match is: ChaC-like family protein (TAIR:AT4G31290.1); Has 1091 Blast hits to 1091 proteins in 381 species: Archae - 0; Bacteria - 541; Metazoa - 194; Fungi - 85; Plants - 75; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink).  protein_id AT1G44790.1p  transcript_id AT1G44790.1  protein_id AT1G44790.1p  transcript_id AT1G44790.1  
At1g44800	chr1:016916671	0.0	C/16916671-16916858,16916521-16916583,16915596-16915712,16915104-16915344,16914871-16915029,16914631-16914782,16914342-16914534	AT1G44800.1  CDS  gene_syn T12C22.7, T12C22_7  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_function molecular_function|GO:0003674||ND  product nodulin MtN21 family protein  note nodulin MtN21 family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT4G08300.1); Has 2511 Blast hits to 2504 proteins in 436 species: Archae - 26; Bacteria - 1176; Metazoa - 4; Fungi - 0; Plants - 628; Viruses - 0; Other Eukaryotes - 677 (source: NCBI BLink).  protein_id AT1G44800.1p  transcript_id AT1G44800.1  protein_id AT1G44800.1p  transcript_id AT1G44800.1  
At1g44810	chr1:016923621	0.0	W/16923621-16924511	AT1G44810.1  CDS  gene_syn T12C22.8, T12C22_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transcription regulator activity|GO:0030528|12535344|TAS  product transcription regulator  note transcription regulator; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related (TAIR:AT4G00250.1); Has 1057 Blast hits to 708 proteins in 132 species: Archae - 0; Bacteria - 85; Metazoa - 306; Fungi - 207; Plants - 172; Viruses - 6; Other Eukaryotes - 281 (source: NCBI BLink).  protein_id AT1G44810.1p  transcript_id AT1G44810.1  protein_id AT1G44810.1p  transcript_id AT1G44810.1  
At1g44820	chr1:016926351	0.0	W/16926351-16927190,16927267-16927404,16927928-16928167,16928256-16928354	AT1G44820.1  CDS  gene_syn T12C22.9, T12C22_9  go_component cytoplasm|GO:0005737||IEA  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_process amino acid metabolic process|GO:0006520||IEA  go_function aminoacylase activity|GO:0004046||IEA  go_function metallopeptidase activity|GO:0008237||IEA  go_function aminoacylase activity|GO:0004046||ISS  product aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative  note aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative; FUNCTIONS IN: metallopeptidase activity, aminoacylase activity; INVOLVED IN: amino acid metabolic process, proteolysis; LOCATED IN: endomembrane system, cytoplasm; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Peptidase M20 (InterPro:IPR002933), N-acyl-L-amino-acid amidohydrolase (InterPro:IPR010159); BEST Arabidopsis thaliana protein match is: aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative (TAIR:AT1G44180.1); Has 3307 Blast hits to 3306 proteins in 783 species: Archae - 76; Bacteria - 1706; Metazoa - 396; Fungi - 166; Plants - 51; Viruses - 2; Other Eukaryotes - 910 (source: NCBI BLink).  protein_id AT1G44820.1p  transcript_id AT1G44820.1  protein_id AT1G44820.1p  transcript_id AT1G44820.1  
At1g44830	chr1:016933792	0.0	W/16933792-16934427	AT1G44830.1  CDS  gene_syn T12C22.10, T12C22_10  function encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor TINY, putative  note AP2 domain-containing transcription factor TINY, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor family protein (TAIR:AT1G21910.1); Has 4270 Blast hits to 3436 proteins in 199 species: Archae - 0; Bacteria - 8; Metazoa - 513; Fungi - 23; Plants - 3371; Viruses - 0; Other Eukaryotes - 355 (source: NCBI BLink).  protein_id AT1G44830.1p  transcript_id AT1G44830.1  protein_id AT1G44830.1p  transcript_id AT1G44830.1  
At1g44835	chr1:016939909	0.0	W/16939909-16939947,16940295-16940354,16940453-16940506,16940602-16940662,16940792-16940868,16941158-16941207,16941311-16941393,16941494-16941564,16941652-16941805,16941902-16942029,16942106-16942180,16942266-16942337	AT1G44835.1  CDS  gene_syn T12C22.11, T12C22_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product YbaK/prolyl-tRNA synthetase family protein  note YbaK/prolyl-tRNA synthetase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: YbaK/aminoacyl-tRNA synthetase associated region (InterPro:IPR007214); Has 751 Blast hits to 750 proteins in 224 species: Archae - 0; Bacteria - 339; Metazoa - 47; Fungi - 5; Plants - 21; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).  protein_id AT1G44835.1p  transcript_id AT1G44835.1  protein_id AT1G44835.1p  transcript_id AT1G44835.1  
At1g44835	chr1:016939909	0.0	W/16939909-16939947,16940295-16940354,16940453-16940506,16940602-16940662,16940792-16940868,16941158-16941207,16941311-16941393,16941494-16941564,16941652-16941805,16941902-16942032,16942106-16942180,16942266-16942337	AT1G44835.2  CDS  gene_syn T12C22.11, T12C22_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product YbaK/prolyl-tRNA synthetase family protein  note YbaK/prolyl-tRNA synthetase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: YbaK/aminoacyl-tRNA synthetase associated region (InterPro:IPR007214); Has 745 Blast hits to 744 proteins in 221 species: Archae - 0; Bacteria - 335; Metazoa - 45; Fungi - 5; Plants - 21; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).  protein_id AT1G44835.2p  transcript_id AT1G44835.2  protein_id AT1G44835.2p  transcript_id AT1G44835.2  
At1g44840	chr1:016943330	0.0	W/16943330-16946110	AT1G44840.1  mRNA_TE_gene  pseudo  gene_syn T12C22.26, T12C22_26  note Transposable element gene, Mutator-like transposase family, has a 1.2e-64 P-value blast match to Q9S9L6 /322-461 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g44850	chr1:016947240	0.0	C/16947240-16949417	AT1G44850.1  mRNA_TE_gene  pseudo  gene_syn T12C22.12, T12C22_12  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G36035.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35100.1)  
At1g44860	chr1:016950304	0.0	C/16950304-16951318	AT1G44860.1  mRNA_TE_gene  pseudo  gene_syn T12C22.13, T12C22_13  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35090.1); similar to Nucleic acid-binding, OB-fold [Medicago truncatula] (GB:ABD33040.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At1g44870	chr1:016951952	0.0	C/16951952-16952437	AT1G44870.1  mRNA_TE_gene  pseudo  gene_syn T12C22.14, T12C22_14  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42510.1)  
At1g44875	chr1:016952808	0.0	W/16952808-16953474	AT1G44875.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42520.1)  
At1g44880	chr1:016954386	0.0	C/16954386-16960042	AT1G44880.1  mRNA_TE_gene  pseudo  gene_syn T12C22.16, T12C22_16  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G10350.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G03970.1); similar to Ulp1 protease family [Arabidopsis thaliana] (TAIR:AT3G42530.1); similar to hypothetical protein 23.t00036 [Brassica oleracea] (GB:ABD65624.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At1g44890	chr1:016963358	0.0	W/16963358-16963752,16963838-16963931,16964259-16964294,16964395-16964447,16964551-16964818	AT1G44890.1  CDS  gene_syn T12C22.18, T12C22_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 24 Blast hits to 24 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G44890.1p  transcript_id AT1G44890.1  protein_id AT1G44890.1p  transcript_id AT1G44890.1  
At1g44900	chr1:016970291	0.0	W/16970291-16970693,16970827-16970984,16971066-16971255,16971349-16971568,16971659-16971866,16971976-16972110,16972200-16972391,16972478-16972650,16972732-16972920,16972994-16973110,16973194-16973278,16973363-16973506,16973587-16973712,16973812-16973994,16974088-16974249,16974332-16974457	AT1G44900.1  CDS  gene_syn T12C22.19, T12C22_19  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process DNA replication|GO:0006260||IEA  go_process DNA replication initiation|GO:0006270||IEA  go_function DNA binding|GO:0003677||IEA  go_function ATP binding|GO:0005524||IEA  go_process DNA replication initiation|GO:0006270||ISS  go_function DNA binding|GO:0003677||ISS  go_function ATP binding|GO:0005524||ISS  go_function DNA-dependent ATPase activity|GO:0008094||ISS  product ATP binding / DNA binding / DNA-dependent ATPase  note ATP binding / DNA binding / DNA-dependent ATPase; FUNCTIONS IN: DNA-dependent ATPase activity, DNA binding, ATP binding; INVOLVED IN: DNA replication, DNA replication initiation; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 2 (InterPro:IPR008045); BEST Arabidopsis thaliana protein match is: DNA replication licensing factor, putative (TAIR:AT2G16440.1); Has 4462 Blast hits to 4158 proteins in 618 species: Archae - 238; Bacteria - 701; Metazoa - 1329; Fungi - 692; Plants - 273; Viruses - 28; Other Eukaryotes - 1201 (source: NCBI BLink).  protein_id AT1G44900.1p  transcript_id AT1G44900.1  protein_id AT1G44900.1p  transcript_id AT1G44900.1  
At1g44910	chr1:016975930	0.0	W/16975930-16975965,16976274-16976588,16976678-16976863,16977384-16977445,16977707-16977776,16978220-16978272,16978357-16978414,16978493-16978758,16978844-16978913,16979153-16979251,16979352-16979420,16979528-16979605,16979779-16979865,16979952-16979986,16980076-16980181,16980552-16980632,16980720-16980812,16980879-16980932,16981017-16981133,16981212-16981310,16981420-16981467,16981541-16981633,16981776-16981883,16981965-16982029,16982131-16982233,16982318-16982632,16982708-16982818	AT1G44910.1  CDS  gene_syn F27F5.2  go_function protein binding|GO:0005515||IEA  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FF (InterPro:IPR002713), WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis thaliana protein match is: protein binding (TAIR:AT3G19670.1); Has 103189 Blast hits to 51222 proteins in 1738 species: Archae - 282; Bacteria - 6419; Metazoa - 50741; Fungi - 10550; Plants - 4781; Viruses - 611; Other Eukaryotes - 29805 (source: NCBI BLink).  protein_id AT1G44910.1p  transcript_id AT1G44910.1  protein_id AT1G44910.1p  transcript_id AT1G44910.1  
At1g44910	chr1:016975930	0.0	W/16975930-16975965,16976274-16976588,16976678-16976863,16977384-16977445,16977707-16977776,16978220-16978272,16978357-16978414,16978493-16978758,16978844-16978913,16979153-16979251,16979352-16979420,16979528-16979605,16979779-16979865,16979952-16979986,16980076-16980181,16980552-16980632,16980720-16980812,16980879-16980932,16981017-16981133,16981212-16981310,16981420-16981467,16981541-16981633,16981776-16981883,16981965-16982029,16982131-16982233,16982318-16982647	AT1G44910.2  CDS  gene_syn F27F5.2  go_function protein binding|GO:0005515||IEA  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FF (InterPro:IPR002713), WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis thaliana protein match is: protein binding (TAIR:AT3G19670.1); Has 12321 Blast hits to 9898 proteins in 607 species: Archae - 34; Bacteria - 631; Metazoa - 5872; Fungi - 1332; Plants - 574; Viruses - 78; Other Eukaryotes - 3800 (source: NCBI BLink).  protein_id AT1G44910.2p  transcript_id AT1G44910.2  protein_id AT1G44910.2p  transcript_id AT1G44910.2  
At1g44920	chr1:016984089	0.0	C/16984089-16984408,16983865-16983992,16983667-16983779,16983389-16983574,16983229-16983258	AT1G44920.1  CDS  gene_syn T12C22.21, T12C22_21  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 121 Blast hits to 121 proteins in 62 species: Archae - 6; Bacteria - 89; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G44920.1p  transcript_id AT1G44920.1  protein_id AT1G44920.1p  transcript_id AT1G44920.1  
At1g44935	chr1:016985002	0.0	W/16985002-16985852	AT1G44935.1  mRNA_TE_gene  pseudo  gene_syn SADHU NON-CODING RETROTRANSPOSON, SADHU9-1  gene SADHU9-1  function Member of Sadhu non-coding retrotransposon family  note Transposable element gene  
At1g44940	chr1:016994155	0.0	W/16994155-16994170,16994474-16994495,16994837-16995044	AT1G44940.1  CDS  gene_syn T12C22.22  product unknown protein  note unknown protein.  protein_id AT1G44940.1p  transcript_id AT1G44940.1  protein_id AT1G44940.1p  transcript_id AT1G44940.1  
At1g44940	chr1:016994155	0.0	W/16994155-16994185,16994474-16994495,16994837-16995044	AT1G44940.2  CDS  gene_syn T12C22.22  product unknown protein  note unknown protein.  protein_id AT1G44940.2p  transcript_id AT1G44940.2  protein_id AT1G44940.2p  transcript_id AT1G44940.2  
At1g44941	chr1:016995113	0.0	C/16995113-16995295	AT1G44941.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G44941.1p  transcript_id AT1G44941.1  protein_id AT1G44941.1p  transcript_id AT1G44941.1  
At1g44960	chr1:016999576	0.0	W/16999576-16999880,17000967-17001447	AT1G44960.1  CDS  gene_syn T12C22.23, T12C22_23  go_component plasma membrane|GO:0005886|17644812|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03260.1); Has 947 Blast hits to 946 proteins in 318 species: Archae - 2; Bacteria - 660; Metazoa - 2; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).  protein_id AT1G44960.1p  transcript_id AT1G44960.1  protein_id AT1G44960.1p  transcript_id AT1G44960.1  
At1g44970	chr1:017002237	0.0	W/17002237-17002506,17002592-17002783,17002870-17003035,17003151-17003563	AT1G44970.1  CDS  gene_syn F27F5.6, F27F5_6  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT2G18150.1); Has 2983 Blast hits to 2968 proteins in 234 species: Archae - 0; Bacteria - 10; Metazoa - 2; Fungi - 131; Plants - 2790; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT1G44970.1p  transcript_id AT1G44970.1  protein_id AT1G44970.1p  transcript_id AT1G44970.1  
At1g44980	chr1:017005858	0.0	C/17005858-17005923,17005505-17005648,17004647-17004911,17004256-17004521	AT1G44980.1  CDS  gene_syn A. THALIANA PECTIN METHYLESTERASE 7, ATPME7, F27F5.7, F27F5_7, PECTIN METHYLESTERASE 7, PME7  gene PME7  go_component cell wall|GO:0005618||IEA  go_process cell wall modification|GO:0042545||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT3G27980.1); Has 1033 Blast hits to 1032 proteins in 152 species: Archae - 0; Bacteria - 194; Metazoa - 1; Fungi - 40; Plants - 798; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G44980.1p  transcript_id AT1G44980.1  protein_id AT1G44980.1p  transcript_id AT1G44980.1  
At1g44990	chr1:017007759	0.0	C/17007759-17007808,17007542-17007716	AT1G44990.1  CDS  gene_syn F27F5.38, F27F5_38  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G44990.1p  transcript_id AT1G44990.1  protein_id AT1G44990.1p  transcript_id AT1G44990.1  
At1g45000	chr1:017009220	0.0	W/17009220-17009322,17009595-17009714,17009810-17009946,17010036-17010197,17010357-17010443,17010535-17010621,17010716-17010853,17011061-17011252,17011350-17011448,17011533-17011607	AT1G45000.1  CDS  gene_syn F27F5.8, F27F5_8  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process protein catabolic process|GO:0030163||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function hydrolase activity|GO:0016787||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATPase activity|GO:0016887||ISS  product 26S proteasome regulatory complex subunit p42D, putative  note 26S proteasome regulatory complex subunit p42D, putative; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein catabolic process; LOCATED IN: nucleolus, cell wall, plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: RPT4A; ATPase (TAIR:AT5G43010.1); Has 27515 Blast hits to 25815 proteins in 1890 species: Archae - 883; Bacteria - 9119; Metazoa - 4367; Fungi - 2488; Plants - 1850; Viruses - 34; Other Eukaryotes - 8774 (source: NCBI BLink).  protein_id AT1G45000.1p  transcript_id AT1G45000.1  protein_id AT1G45000.1p  transcript_id AT1G45000.1  
At1g45000	chr1:017009220	0.0	W/17009220-17009322,17009595-17009714,17009810-17009946,17010036-17010197,17010357-17010443,17010535-17010621,17010716-17010853,17011350-17011448,17011533-17011607	AT1G45000.2  CDS  gene_syn F27F5.8, F27F5_8  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATPase activity|GO:0016887||ISS  product 26S proteasome regulatory complex subunit p42D, putative  note 26S proteasome regulatory complex subunit p42D, putative; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: RPT4A; ATPase (TAIR:AT5G43010.1); Has 2430 Blast hits to 2166 proteins in 241 species: Archae - 46; Bacteria - 794; Metazoa - 1157; Fungi - 266; Plants - 46; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).  protein_id AT1G45000.2p  transcript_id AT1G45000.2  protein_id AT1G45000.2p  transcript_id AT1G45000.2  
At1g45010	chr1:017015176	0.0	C/17015176-17015403,17014939-17015079,17014721-17014840,17013942-17014037,17013513-17013623	AT1G45010.1  CDS  gene_syn F27F5.9, F27F5_9  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G35180.1); Has 139 Blast hits to 139 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 61; Fungi - 4; Plants - 48; Viruses - 3; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G45010.1p  transcript_id AT1G45010.1  protein_id AT1G45010.1p  transcript_id AT1G45010.1  
At1g45015	chr1:017021637	0.0	W/17021637-17021730,17022043-17022126,17022222-17022388,17022498-17022614	AT1G45015.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MD-2-related lipid recognition domain-containing protein / ML domain-containing protein  note MD-2-related lipid recognition domain-containing protein / ML domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: MD-2-related lipid-recognition (InterPro:IPR003172); BEST Arabidopsis thaliana protein match is: MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (TAIR:AT5G23820.1); Has 37 Blast hits to 37 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G45015.1p  transcript_id AT1G45015.1  protein_id AT1G45015.1p  transcript_id AT1G45015.1  
At1g45020	chr1:017024408	0.0	C/17024408-17028720	AT1G45020.1  mRNA_TE_gene  pseudo  gene_syn F27F5.37  note Transposable element gene, copia-like retrotransposon family, has a 1.6e-248 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)  
At1g45030	chr1:017029224	0.0	C/17029224-17029595	AT1G45030.1  mRNA_TE_gene  pseudo  gene_syn F27F5.11  note Transposable element gene, pseudogene, similar to Putative non-LTR retroelement reverse transcriptase, blastp match of 40% identity and 2.1e-08 P-value to GP|14028978|gb|AAK52519.1|AC079128_2|AC079128 Putative non-LTR retroelement reverse transcriptase {Oryza sativa}  
At1g45035	chr1:017029613	0.0	W/17029613-17030382	AT1G45035.1  mRNA_TE_gene  pseudo  gene_syn F27F5.12  note Transposable element gene, pseudogene, hypothetical protein  
At1g45040	chr1:017030498	0.0	C/17030498-17030855	AT1G45040.1  pseudogenic_transcript  pseudo  gene_syn F27F5.35  note pseudogene, hypothetical protein  
At1g45050	chr1:017031337	0.0	W/17031337-17031366,17031466-17031569,17031660-17031762,17032026-17032089,17032673-17032761,17032872-17032967	AT1G45050.1  CDS  gene_syn ATUBC2-1, Arabidopsis thaliana ubiquitin-conjugating enzyme 15, F27F5.13, F27F5_13, UBC15  gene ATUBC2-1  function member of ubiquitin-conjugating E2-proteins  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_process negative regulation of flower development|GO:0009910|18798874|IGI  go_process leaf morphogenesis|GO:0009965|18798874|IGI  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|8219072|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product ATUBC2-1; ubiquitin-protein ligase  note ATUBC2-1; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: negative regulation of flower development, leaf morphogenesis, ubiquitin-dependent protein catabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC18 (ubiquitin-conjugating enzyme 18); small conjugating protein ligase/ ubiquitin-protein ligase (TAIR:AT5G42990.1); Has 6664 Blast hits to 6663 proteins in 298 species: Archae - 0; Bacteria - 0; Metazoa - 3200; Fungi - 1328; Plants - 1021; Viruses - 16; Other Eukaryotes - 1099 (source: NCBI BLink).  protein_id AT1G45050.1p  transcript_id AT1G45050.1  protein_id AT1G45050.1p  transcript_id AT1G45050.1  
At1g45063	chr1:017034068	0.0	C/17034068-17034886	AT1G45063.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  product copper ion binding / electron carrier  note copper ion binding / electron carrier; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: plastocyanin-like domain-containing protein (TAIR:AT4G01380.1).  protein_id AT1G45063.2p  transcript_id AT1G45063.2  protein_id AT1G45063.2p  transcript_id AT1G45063.2  
At1g45063	chr1:017034096	0.0	C/17034096-17034886,17033335-17033653	AT1G45063.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  product copper ion binding / electron carrier  note copper ion binding / electron carrier; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: plastocyanin-like domain-containing protein (TAIR:AT4G01380.1); Has 1485 Blast hits to 780 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1484; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G45063.1p  transcript_id AT1G45063.1  protein_id AT1G45063.1p  transcript_id AT1G45063.1  
At1g45070	chr1:017035871	0.0	W/17035871-17038630	AT1G45070.1  mRNA_TE_gene  pseudo  gene_syn F27F5.15  note Transposable element gene, Mutator-like transposase family, has a 7.5e-84 P-value blast match to Q9SL18 /349-510 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g45080	chr1:017039235	0.0	W/17039235-17040180	AT1G45080.1  mRNA_TE_gene  pseudo  gene_syn F27F5.31, F27F5_31  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05480.1); similar to Nucleic acid-binding, OB-fold [Medicago truncatula] (GB:ABD32456.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At1g45090	chr1:017044541	0.0	C/17044541-17049561	AT1G45090.1  mRNA_TE_gene  pseudo  gene_syn F27F5.16, F27F5_16  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28480.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G42580.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G12100.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653); contains InterPro domain Collagen triple helix repeat; (InterPro:IPR008160)  
At1g45100	chr1:017050631	0.0	W/17050631-17051072,17051138-17052189	AT1G45100.1  CDS  gene_syn F27F5.17, F27F5_17  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||ISS  product polyadenylate-binding protein, putative / PABP, putative  note polyadenylate-binding protein, putative / PABP, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT5G41690.1); Has 6292 Blast hits to 4816 proteins in 263 species: Archae - 0; Bacteria - 22; Metazoa - 3669; Fungi - 1055; Plants - 971; Viruses - 0; Other Eukaryotes - 575 (source: NCBI BLink).  protein_id AT1G45100.1p  transcript_id AT1G45100.1  protein_id AT1G45100.1p  transcript_id AT1G45100.1  
At1g45110	chr1:017052572	0.0	W/17052572-17052721,17052800-17052867,17052941-17053037,17053128-17053256,17053414-17053522,17053614-17053758,17053956-17053998,17054095-17054268,17054430-17054546	AT1G45110.1  CDS  gene_syn F27F5.18, F27F5_18  go_process metabolic process|GO:0008152||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_process metabolic process|GO:0008152||ISS  go_function methyltransferase activity|GO:0008168||ISS  product tetrapyrrole methylase family protein  note tetrapyrrole methylase family protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0011, conserved site (InterPro:IPR018063), Tetrapyrrole methylase (InterPro:IPR000878), Tetrapyrrole methylase, subdomain 1 (InterPro:IPR014777), Uncharacterised protein family UPF0011 (InterPro:IPR008189); Has 6071 Blast hits to 6069 proteins in 1308 species: Archae - 41; Bacteria - 3006; Metazoa - 1; Fungi - 2; Plants - 32; Viruses - 0; Other Eukaryotes - 2989 (source: NCBI BLink).  protein_id AT1G45110.1p  transcript_id AT1G45110.1  protein_id AT1G45110.1p  transcript_id AT1G45110.1  
At1g45120	chr1:017055355	0.0	W/17055355-17059755	AT1G45120.1  mRNA_TE_gene  pseudo  gene_syn F27F5.19  note Transposable element gene, copia-like retrotransposon family, has a 1.5e-294 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At1g45130	chr1:017065447	0.0	W/17065447-17065626,17065702-17065797,17065938-17066050,17066144-17066210,17066281-17066373,17066448-17066591,17066675-17066763,17066858-17066963,17067048-17067135,17067222-17067505,17067590-17067768,17067860-17067969,17068043-17068152,17068242-17068352,17068446-17068559,17068709-17068911,17068999-17069110	AT1G45130.1  CDS  gene_syn BGAL5, F27F5.20, F27F5_20, beta-galactosidase 5  gene BGAL5  go_component beta-galactosidase complex|GO:0009341||IEA  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process lactose catabolic process|GO:0005990||IEA  go_process lactose catabolic process, using glucoside 3-dehydrogenase|GO:0019513||IEA  go_process lactose catabolic process via UDP-galactose|GO:0019515||IEA  go_function catalytic activity|GO:0003824||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  go_function cation binding|GO:0043169||IEA  go_function beta-galactosidase activity|GO:0004565||ISS  product BGAL5 (beta-galactosidase 5); beta-galactosidase/ catalytic/ cation binding  note beta-galactosidase 5 (BGAL5); FUNCTIONS IN: cation binding, beta-galactosidase activity, catalytic activity; INVOLVED IN: lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process; LOCATED IN: endomembrane system, beta-galactosidase complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: BGAL3 (beta-galactosidase 3); beta-galactosidase/ catalytic/ cation binding / sugar binding (TAIR:AT4G36360.2); Has 1240 Blast hits to 1165 proteins in 254 species: Archae - 11; Bacteria - 372; Metazoa - 313; Fungi - 126; Plants - 370; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT1G45130.1p  transcript_id AT1G45130.1  protein_id AT1G45130.1p  transcript_id AT1G45130.1  
At1g45140	chr1:017071358	0.0	C/17071358-17074556	AT1G45140.1  mRNA_TE_gene  pseudo  gene_syn F27F5.33  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.4e-37 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At1g45145	chr1:017076170	0.0	C/17076170-17076256,17075264-17075533	AT1G45145.1  CDS  gene_syn ATH5, ATTRX5, F27F5.21, F27F5_21, LIV1, LOCUS OF INSENSITIVITY TO VICTORIN 1, THIOREDOXIN, THIOREDOXIN H-TYPE 5  gene ATTRX5  function encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells.  go_component plasma membrane|GO:0005886|17644812|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytosol|GO:0005829|7777559|TAS  go_process response to oxidative stress|GO:0006979|14976236|IEP  go_process response to microbial phytotoxin|GO:0010188|17322408|IMP  go_process defense response to fungus|GO:0050832|17322408|IMP  go_function oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor|GO:0016671|7777559|IDA  product ATTRX5; oxidoreductase, acting on sulfur group of donors, disulfide as acceptor  note ATTRX5; FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: response to oxidative stress, response to cadmium ion, defense response to fungus, response to microbial phytotoxin; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937); BEST Arabidopsis thaliana protein match is: ATTRX3 (THIOREDOXIN 3); oxidoreductase, acting on sulfur group of donors, disulfide as acceptor (TAIR:AT5G42980.1); Has 12201 Blast hits to 11986 proteins in 1698 species: Archae - 161; Bacteria - 5530; Metazoa - 1591; Fungi - 567; Plants - 1094; Viruses - 6; Other Eukaryotes - 3252 (source: NCBI BLink).  protein_id AT1G45145.1p  transcript_id AT1G45145.1  protein_id AT1G45145.1p  transcript_id AT1G45145.1  
At1g45150	chr1:017082318	0.0	C/17082318-17082330,17081849-17082039,17081439-17081575,17081213-17081323,17081013-17081114,17080772-17080877,17080320-17080689,17080118-17080199,17079945-17080038,17079680-17079776,17079144-17079237,17078616-17078688,17078059-17078232,17077858-17077980,17077615-17077779	AT1G45150.1  CDS  gene_syn F27F5.22, F27F5_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; Has 112 Blast hits to 100 proteins in 32 species: Archae - 0; Bacteria - 82; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G45150.1p  transcript_id AT1G45150.1  protein_id AT1G45150.1p  transcript_id AT1G45150.1  
At1g45160	chr1:017090073	0.0	C/17090073-17090277,17089690-17089790,17089433-17089609,17087986-17089200,17087346-17087518,17087044-17087269,17086573-17086665,17086355-17086495,17086185-17086277,17085726-17085918,17085564-17085649,17085065-17085153,17084733-17084784,17084554-17084610,17084115-17084342	AT1G45160.1  CDS  gene_syn F27F5.23, F27F5_23  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product kinase  note kinase; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT3G17850.1); Has 92109 Blast hits to 90784 proteins in 3156 species: Archae - 74; Bacteria - 8388; Metazoa - 40247; Fungi - 8576; Plants - 16697; Viruses - 479; Other Eukaryotes - 17648 (source: NCBI BLink).  protein_id AT1G45160.1p  transcript_id AT1G45160.1  protein_id AT1G45160.1p  transcript_id AT1G45160.1  
At1g45160	chr1:017090073	0.0	C/17090073-17090277,17089690-17089790,17089433-17089609,17087986-17089200,17087346-17087518,17087044-17087269,17086573-17086665,17086355-17086495,17086185-17086277,17085726-17085918,17085564-17085649,17085065-17085153,17084733-17084784,17084554-17084610,17084214-17084342,17084040-17084114,17083814-17083912	AT1G45160.2  CDS  gene_syn F27F5.23, F27F5_23  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product kinase  note kinase; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), AGC-kinase, C-terminal (InterPro:IPR000961), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT3G17850.1); Has 92282 Blast hits to 90957 proteins in 3159 species: Archae - 74; Bacteria - 8397; Metazoa - 40313; Fungi - 8589; Plants - 16726; Viruses - 483; Other Eukaryotes - 17700 (source: NCBI BLink).  protein_id AT1G45160.2p  transcript_id AT1G45160.2  protein_id AT1G45160.2p  transcript_id AT1G45160.2  
At1g45165	chr1:017090869	0.0	W/17090869-17091201	AT1G45165.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Expressed protein  note Expressed protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G45165.1p  transcript_id AT1G45165.1  protein_id AT1G45165.1p  transcript_id AT1G45165.1  
At1g45170	chr1:017097710	0.0	C/17097710-17097910,17097001-17097360,17096233-17096313	AT1G45170.1  CDS  gene_syn F27F5.25, F27F5_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42960.1); Has 30 Blast hits to 30 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G45170.1p  transcript_id AT1G45170.1  protein_id AT1G45170.1p  transcript_id AT1G45170.1  
At1g45170	chr1:017097710	0.0	C/17097710-17097910,17097214-17097360,17097001-17097075,17096233-17096313	AT1G45170.2  CDS  gene_syn F27F5.25, F27F5_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42960.1); Has 30 Blast hits to 30 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G45170.2p  transcript_id AT1G45170.2  protein_id AT1G45170.2p  transcript_id AT1G45170.2  
At1g45180	chr1:017099335	0.0	W/17099335-17100831,17100977-17101027,17101109-17101207,17101276-17101416,17101534-17101683	AT1G45180.1  CDS  gene_syn F27F5.26, F27F5_26  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G42940.1); Has 6447 Blast hits to 6401 proteins in 226 species: Archae - 0; Bacteria - 19; Metazoa - 2268; Fungi - 466; Plants - 2349; Viruses - 50; Other Eukaryotes - 1295 (source: NCBI BLink).  protein_id AT1G45180.1p  transcript_id AT1G45180.1  protein_id AT1G45180.1p  transcript_id AT1G45180.1  
At1g45190	chr1:017104406	0.0	W/17104406-17104924	AT1G45190.1  CDS  gene_syn F27F5.27, F27F5_27  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11990.1); Has 43 Blast hits to 43 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G45190.1p  transcript_id AT1G45190.1  protein_id AT1G45190.1p  transcript_id AT1G45190.1  
At1g45191	chr1:017116044	0.0	W/17116044-17116187,17116257-17116320,17116812-17116861,17116953-17117028,17117106-17117177,17117253-17117340,17117434-17117686,17117789-17117904,17117994-17118202,17118492-17118551,17118663-17118759,17118842-17119076	AT1G45191.2  CDS  gene_syn BETA GLUCOSIDASE 1, BGLU1  gene BGLU1  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  product BGLU1 (BETA GLUCOSIDASE 1); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 1 (BGLU1); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU3 (BETA GLUCOSIDASE 2); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT4G22100.1); Has 5677 Blast hits to 5458 proteins in 795 species: Archae - 100; Bacteria - 3095; Metazoa - 574; Fungi - 137; Plants - 841; Viruses - 0; Other Eukaryotes - 930 (source: NCBI BLink).  protein_id AT1G45191.2p  transcript_id AT1G45191.2  protein_id AT1G45191.2p  transcript_id AT1G45191.2  
At1g45201	chr1:017123889	0.0	W/17123889-17124207,17124712-17124905,17125017-17125050,17126777-17126912,17127017-17127488,17128178-17128462	AT1G45201.1  CDS  gene_syn ARABIDOPSIS THALIANA TRIACYLGLYCEROL LIPASE-LIKE 1, AT1G45196, ATTLL1, TLL1, TRIACYLGLYCEROL LIPASE-LIKE 1  gene TLL1  function Target of AtGRP7 regulation.  go_component vacuole|GO:0005773|15539469|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_process lipid metabolic process|GO:0006629||ISS  go_process circadian rhythm|GO:0007623|17924945|IEP  go_function triacylglycerol lipase activity|GO:0004806||ISS  product TLL1 (TRIACYLGLYCEROL LIPASE-LIKE 1); triacylglycerol lipase  note TRIACYLGLYCEROL LIPASE-LIKE 1 (TLL1); FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: circadian rhythm, lipid metabolic process; LOCATED IN: vacuole, membrane; EXPRESSED IN: guard cell, leaf; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: triacylglycerol lipase (TAIR:AT5G42930.1); Has 1074 Blast hits to 1069 proteins in 204 species: Archae - 0; Bacteria - 260; Metazoa - 54; Fungi - 251; Plants - 203; Viruses - 2; Other Eukaryotes - 304 (source: NCBI BLink).  protein_id AT1G45201.1p  transcript_id AT1G45201.1  protein_id AT1G45201.1p  transcript_id AT1G45201.1  
At1g45201	chr1:017123889	0.0	W/17123889-17124207,17124712-17124905,17125017-17125050,17126777-17126912,17127017-17127497	AT1G45201.2  CDS  gene_syn ARABIDOPSIS THALIANA TRIACYLGLYCEROL LIPASE-LIKE 1, AT1G45196, ATTLL1, TLL1, TRIACYLGLYCEROL LIPASE-LIKE 1  gene TLL1  function Target of AtGRP7 regulation.  go_component vacuole|GO:0005773|15539469|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_process lipid metabolic process|GO:0006629||ISS  go_process circadian rhythm|GO:0007623|17924945|IEP  go_function triacylglycerol lipase activity|GO:0004806||ISS  product TLL1 (TRIACYLGLYCEROL LIPASE-LIKE 1); triacylglycerol lipase  note TRIACYLGLYCEROL LIPASE-LIKE 1 (TLL1); FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: circadian rhythm, lipid metabolic process; LOCATED IN: vacuole, membrane; EXPRESSED IN: guard cell, leaf; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: triacylglycerol lipase (TAIR:AT5G42930.1); Has 1065 Blast hits to 1061 proteins in 201 species: Archae - 0; Bacteria - 256; Metazoa - 54; Fungi - 251; Plants - 201; Viruses - 2; Other Eukaryotes - 301 (source: NCBI BLink).  protein_id AT1G45201.2p  transcript_id AT1G45201.2  protein_id AT1G45201.2p  transcript_id AT1G45201.2  
At1g45207	chr1:017133348	0.0	C/17133348-17133548,17132836-17132941,17132613-17132702,17131882-17132523,17131333-17131660,17131080-17131158,17130703-17130924	AT1G45207.2  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product remorin family protein  note remorin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal region (InterPro:IPR005516); BEST Arabidopsis thaliana protein match is: remorin family protein (TAIR:AT4G36970.1); Has 1135 Blast hits to 247 proteins in 47 species: Archae - 0; Bacteria - 47; Metazoa - 24; Fungi - 8; Plants - 178; Viruses - 0; Other Eukaryotes - 878 (source: NCBI BLink).  protein_id AT1G45207.2p  transcript_id AT1G45207.2  protein_id AT1G45207.2p  transcript_id AT1G45207.2  
At1g45211	chr1:017136065	0.0	W/17136065-17136392	AT1G45211.1  pseudogenic_transcript  pseudo  function Encodes a ECA1 gametogenesis related family protein [pseudogene]  
At1g45215	chr1:017137787	0.0	W/17137787-17138134	AT1G45215.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G45221.1); Has 36 Blast hits to 36 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G45215.1p  transcript_id AT1G45215.1  protein_id AT1G45215.1p  transcript_id AT1G45215.1  
At1g45221	chr1:017139532	0.0	W/17139532-17139879	AT1G45221.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502), Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G45215.1); Has 36 Blast hits to 36 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G45221.1p  transcript_id AT1G45221.1  protein_id AT1G45221.1p  transcript_id AT1G45221.1  
At1g45223	chr1:017141272	0.0	W/17141272-17141619	AT1G45223.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G45221.1); Has 36 Blast hits to 36 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G45223.1p  transcript_id AT1G45223.1  protein_id AT1G45223.1p  transcript_id AT1G45223.1  
At1g45225	chr1:017143007	0.0	W/17143007-17143354	AT1G45225.1  pseudogenic_transcript  pseudo  function Encodes a ECA1 gametogenesis related family protein [pseudogene]  
At1g45227	chr1:017144753	0.0	W/17144753-17145100	AT1G45227.1  pseudogenic_transcript  pseudo  function Encodes a ECA1 gametogenesis related family protein [pseudogene]  
At1g45256	chr1:017145615	0.0	C/17145615-17145902	AT1G45256.2  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 1.7e-06 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota)  
At1g45243	chr1:017147058	0.0	W/17147058-17147849	AT1G45243.1  CDS  gene_syn 68402.TRNA-PRO-3  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), DC1 (InterPro:IPR004146); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT5G48320.1); Has 985 Blast hits to 432 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 985; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G45243.1p  transcript_id AT1G45243.1  protein_id AT1G45243.1p  transcript_id AT1G45243.1  
At1g45231	chr1:017151103	0.0	C/17151103-17151194,17150978-17151017,17150867-17150900,17150703-17150767,17150212-17150622,17149979-17150100,17149370-17149533,17149047-17149278,17148760-17148895,17148595-17148689,17148375-17148504,17148019-17148114	AT1G45231.2  CDS  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product WW domain-containing protein  note WW domain-containing protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30550.2); Has 604 Blast hits to 598 proteins in 268 species: Archae - 66; Bacteria - 209; Metazoa - 108; Fungi - 89; Plants - 28; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT1G45231.2p  transcript_id AT1G45231.2  protein_id AT1G45231.2p  transcript_id AT1G45231.2  
At1g45233	chr1:017152956	0.0	W/17152956-17153438,17153613-17153949,17154041-17154333,17154417-17154662	AT1G45233.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42920.2); Has 260 Blast hits to 260 proteins in 93 species: Archae - 0; Bacteria - 7; Metazoa - 140; Fungi - 46; Plants - 26; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT1G45233.2p  transcript_id AT1G45233.2  protein_id AT1G45233.2p  transcript_id AT1G45233.2  
At1g45234	chr1:017156607	0.0	W/17156607-17156678	AT1G45234.1  tRNA  gene_syn 68413.TRNA-PRO-6  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G45234.1  
At1g45236	chr1:017157360	0.0	W/17157360-17157431	AT1G45236.1  tRNA  gene_syn 68413.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: AAG)  transcript_id AT1G45236.1  
At1g45238	chr1:017158531	0.0	W/17158531-17158602	AT1G45238.1  tRNA  gene_syn 68413.TRNA-PRO-5  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G45238.1  
At1g45229	chr1:017158774	0.0	C/17158774-17158801,17155533-17155603,17155419-17155447,17155072-17155084	AT1G45229.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G45229.1p  transcript_id AT1G45229.1  protein_id AT1G45229.1p  transcript_id AT1G45229.1  
At1g45240	chr1:017158979	0.0	W/17158979-17159050	AT1G45240.1  tRNA  gene_syn 68413.TRNA-PRO-4  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G45240.1  
At1g45242	chr1:017160528	0.0	W/17160528-17160599	AT1G45242.1  tRNA  gene_syn 68413.TRNA-PRO-3  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G45242.1  
At1g45244	chr1:017160969	0.0	W/17160969-17161040	AT1G45244.1  tRNA  gene_syn 68413.TRNA-PRO-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G45244.1  
At1g45246	chr1:017162022	0.0	W/17162022-17162093	AT1G45246.1  tRNA  gene_syn 68413.TRNA-PRO-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G45246.1  
At1g45248	chr1:017164197	0.0	C/17164197-17164229,17163781-17163876,17163535-17163683,17163240-17163276	AT1G45248.4  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: WIYLD domain (InterPro:IPR018848); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40020.3).  protein_id AT1G45248.4p  transcript_id AT1G45248.4  protein_id AT1G45248.4p  transcript_id AT1G45248.4  
At1g45248	chr1:017164197	0.0	C/17164197-17164229,17163781-17163876,17163535-17163683,17163346-17163399,17163240-17163276	AT1G45248.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: WIYLD domain (InterPro:IPR018848); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40020.3); Has 15 Blast hits to 15 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G45248.2p  transcript_id AT1G45248.2  protein_id AT1G45248.2p  transcript_id AT1G45248.2  
At1g45248	chr1:017164197	0.0	C/17164197-17164229,17163781-17163876,17163535-17163683,17163346-17163399,17163240-17163276	AT1G45248.3  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: WIYLD domain (InterPro:IPR018848); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40020.3).  protein_id AT1G45248.3p  transcript_id AT1G45248.3  protein_id AT1G45248.3p  transcript_id AT1G45248.3  
At1g45248	chr1:017164197	0.0	C/17164197-17164229,17163781-17163876,17163535-17163683,17163346-17163420,17163240-17163276	AT1G45248.5  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: WIYLD domain (InterPro:IPR018848); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40020.3).  protein_id AT1G45248.5p  transcript_id AT1G45248.5  protein_id AT1G45248.5p  transcript_id AT1G45248.5  
At1g45249	chr1:017166189	0.0	C/17166189-17167415	AT1G45249.2  CDS  gene_syn ABF2, ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 2, ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, AREB1  gene ABF2  function Leucine zipper transcription factor that binds to the abscisic acid (ABA) responsive element (ABRE) motif in the promoter region of ABA-inducible genes. Enhances drought tolerance in vegetative tissues. Required for normal glucose response. Localized in the nucleus. Expressed constitutively in roots, leaf vascular tissues, and hydathodes or in all tissues under stress conditions. It s phosphorylated by a ABA-activated 42-KDa kinase. Overexpression of the phosphorylated active form of AREB1 expressed many ABA-inducible genes, such as RD29B, without ABA treatment.  go_component nucleus|GO:0005634|16284313|IDA  go_process response to water deprivation|GO:0009414|16284313|IEP  go_process response to water deprivation|GO:0009414|16284313|IMP  go_process response to water deprivation|GO:0009414|16463099|IEP  go_process response to salt stress|GO:0009651|16284313|IEP  go_process response to salt stress|GO:0009651|16463099|IEP  go_process response to abscisic acid stimulus|GO:0009737|16284313|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463099|IEP  go_process abscisic acid mediated signaling|GO:0009738|11005831|IPI  go_process glucose mediated signaling|GO:0010255|15361142|IMP  go_process positive regulation of gene-specific transcription|GO:0043193|19207209|IDA  go_function DNA binding|GO:0003677|11005831|IPI  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function protein binding|GO:0005515|16299177|IPI  go_function transcription activator activity|GO:0016563|11005831|IPI  go_function transcription activator activity|GO:0016563|16463099|IDA  go_function transcription activator activity|GO:0016563|19207209|IDA  product ABF2 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 2); DNA binding / protein binding / transcription activator/ transcription factor  note ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 2 (ABF2); FUNCTIONS IN: protein binding, transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: hydathode, whole plant, leaf vascular system, root, cultured cell; EXPRESSED DURING: dry seed stage; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827); BEST Arabidopsis thaliana protein match is: ABF4 (ABRE BINDING FACTOR 4); DNA binding / protein binding / transcription activator/ transcription factor (TAIR:AT3G19290.2); Has 329 Blast hits to 257 proteins in 40 species: Archae - 0; Bacteria - 9; Metazoa - 7; Fungi - 4; Plants - 308; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G45249.2p  transcript_id AT1G45249.2  protein_id AT1G45249.2p  transcript_id AT1G45249.2  
At1g45249	chr1:017166342	0.0	C/17166342-17167415,17165711-17165782,17165601-17165630,17165420-17165494	AT1G45249.1  CDS  gene_syn ABF2, ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 2, ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, AREB1  gene ABF2  function Leucine zipper transcription factor that binds to the abscisic acid (ABA) responsive element (ABRE) motif in the promoter region of ABA-inducible genes. Enhances drought tolerance in vegetative tissues. Required for normal glucose response. Localized in the nucleus. Expressed constitutively in roots, leaf vascular tissues, and hydathodes or in all tissues under stress conditions. It s phosphorylated by a ABA-activated 42-KDa kinase. Overexpression of the phosphorylated active form of AREB1 expressed many ABA-inducible genes, such as RD29B, without ABA treatment.  go_component nucleus|GO:0005634|16284313|IDA  go_process response to water deprivation|GO:0009414|16284313|IEP  go_process response to water deprivation|GO:0009414|16284313|IMP  go_process response to water deprivation|GO:0009414|16463099|IEP  go_process response to salt stress|GO:0009651|16284313|IEP  go_process response to salt stress|GO:0009651|16463099|IEP  go_process response to abscisic acid stimulus|GO:0009737|16284313|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463099|IEP  go_process abscisic acid mediated signaling|GO:0009738|11005831|IPI  go_process glucose mediated signaling|GO:0010255|15361142|IMP  go_process positive regulation of gene-specific transcription|GO:0043193|19207209|IDA  go_function DNA binding|GO:0003677|11005831|IPI  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function protein binding|GO:0005515|16299177|IPI  go_function transcription activator activity|GO:0016563|11005831|IPI  go_function transcription activator activity|GO:0016563|16463099|IDA  go_function transcription activator activity|GO:0016563|19207209|IDA  product ABF2 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 2); DNA binding / protein binding / transcription activator/ transcription factor  note ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 2 (ABF2); FUNCTIONS IN: protein binding, transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: hydathode, whole plant, leaf vascular system, root, cultured cell; EXPRESSED DURING: dry seed stage; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: ABF4 (ABRE BINDING FACTOR 4); DNA binding / protein binding / transcription activator/ transcription factor (TAIR:AT3G19290.1); Has 1519 Blast hits to 1447 proteins in 142 species: Archae - 0; Bacteria - 9; Metazoa - 374; Fungi - 24; Plants - 1058; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT1G45249.1p  transcript_id AT1G45249.1  protein_id AT1G45249.1p  transcript_id AT1G45249.1  
At1g45230	chr1:017171014	0.0	C/17171014-17171381,17170337-17170455,17169874-17170046	AT1G45230.2  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product defective chloroplasts and leaves protein-related / DCL protein-related  note defective chloroplasts and leaves protein-related / DCL protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46630.1); Has 123 Blast hits to 123 proteins in 22 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G45230.2p  transcript_id AT1G45230.2  protein_id AT1G45230.2p  transcript_id AT1G45230.2  
At1g45230	chr1:017171014	0.0	C/17171014-17171381,17170341-17170455,17169874-17170050	AT1G45230.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product defective chloroplasts and leaves protein-related / DCL protein-related  note defective chloroplasts and leaves protein-related / DCL protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46630.1); Has 125 Blast hits to 125 proteins in 23 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G45230.1p  transcript_id AT1G45230.1  protein_id AT1G45230.1p  transcript_id AT1G45230.1  
At1g45332	chr1:017176282	0.0	C/17176282-17176683,17175993-17176214,17175776-17175897,17175532-17175682,17175181-17175252,17174959-17175054,17174806-17174894,17174608-17174674,17174357-17174395,17174191-17174251,17173973-17174082,17173802-17173876,17173633-17173701,17173432-17173553,17173203-17173328,17172885-17173106,17172743-17172803,17172507-17172665	AT1G45332.1  CDS  gene_syn AT1G45261, F2G19.2, F2G19_2  go_component mitochondrion|GO:0005739|17137349|IDA  go_process translational elongation|GO:0006414||IEA  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function translation elongation factor activity|GO:0003746||ISS  go_function translation factor activity, nucleic acid binding|GO:0008135||ISS  product mitochondrial elongation factor, putative  note mitochondrial elongation factor, putative; FUNCTIONS IN: translation factor activity, nucleic acid binding, translation elongation factor activity, ATP binding; INVOLVED IN: translational elongation; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EFG/EF2, domain IV (InterPro:IPR005517), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Translation elongation factor EFG/EF2 (InterPro:IPR004540), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721), Elongation factor G, III and V (InterPro:IPR009022), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: mitochondrial elongation factor, putative (TAIR:AT2G45030.1); Has 58367 Blast hits to 51097 proteins in 6910 species: Archae - 612; Bacteria - 26917; Metazoa - 5938; Fungi - 4979; Plants - 1045; Viruses - 0; Other Eukaryotes - 18876 (source: NCBI BLink).  protein_id AT1G45332.1p  transcript_id AT1G45332.1  protein_id AT1G45332.1p  transcript_id AT1G45332.1  
At1g45403	chr1:017177804	0.0	W/17177804-17177874,17177977-17178415	AT1G45403.1  CDS  gene_syn F2G19.3, F2G19_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product membrane protein  note membrane protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38080.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G45403.1p  transcript_id AT1G45403.1  protein_id AT1G45403.1p  transcript_id AT1G45403.1  
At1g45474	chr1:017179353	0.0	W/17179353-17179537,17179610-17179742,17179828-17179940,17180021-17180217,17180297-17180439	AT1G45474.1  CDS  gene_syn F2G19.4, F2G19_4, LHCA5, PHOTOSYSTEM I LIGHT HARVESTING COMPLEX GENE 5  gene LHCA5  function Encodes a component of the light harvesting complex of photosystem I.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component photosystem I antenna complex|GO:0009782|15356385|IDA  go_component light-harvesting complex|GO:0030076||ISS  go_process photosynthesis, light harvesting in photosystem I|GO:0009768|16098971|IGI  go_process photosynthesis|GO:0015979||ISS  go_function pigment binding|GO:0031409|15563470|IDA  product LHCA5; pigment binding  note LHCA5; FUNCTIONS IN: pigment binding; INVOLVED IN: photosynthesis, light harvesting in photosystem I, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast thylakoid membrane, photosystem I antenna complex, chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4); chlorophyll binding (TAIR:AT3G47470.1); Has 1759 Blast hits to 1693 proteins in 195 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1534; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).  protein_id AT1G45474.1p  transcript_id AT1G45474.1  protein_id AT1G45474.1p  transcript_id AT1G45474.1  
At1g45474	chr1:017179353	0.0	W/17179353-17179537,17179610-17179742,17179828-17179940,17180021-17180217,17180297-17180439	AT1G45474.2  CDS  gene_syn F2G19.4, F2G19_4, LHCA5, PHOTOSYSTEM I LIGHT HARVESTING COMPLEX GENE 5  gene LHCA5  function Encodes a component of the light harvesting complex of photosystem I.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component photosystem I antenna complex|GO:0009782|15356385|IDA  go_component light-harvesting complex|GO:0030076||ISS  go_process photosynthesis, light harvesting in photosystem I|GO:0009768|16098971|IGI  go_process photosynthesis|GO:0015979||ISS  go_function pigment binding|GO:0031409|15563470|IDA  product LHCA5; pigment binding  note LHCA5; FUNCTIONS IN: pigment binding; INVOLVED IN: photosynthesis, light harvesting in photosystem I, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast thylakoid membrane, photosystem I antenna complex, chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4); chlorophyll binding (TAIR:AT3G47470.1); Has 1759 Blast hits to 1693 proteins in 195 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1534; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).  protein_id AT1G45474.2p  transcript_id AT1G45474.2  protein_id AT1G45474.2p  transcript_id AT1G45474.2  
At1g45545	chr1:017182400	0.0	C/17182400-17182957,17180615-17182315	AT1G45545.1  CDS  gene_syn F2G19.5, F2G19_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42880.1); Has 100224 Blast hits to 52415 proteins in 2152 species: Archae - 1289; Bacteria - 15834; Metazoa - 48053; Fungi - 7428; Plants - 4259; Viruses - 489; Other Eukaryotes - 22872 (source: NCBI BLink).  protein_id AT1G45545.1p  transcript_id AT1G45545.1  protein_id AT1G45545.1p  transcript_id AT1G45545.1  
At1g45616	chr1:017183550	0.0	C/17183550-17186534	AT1G45616.1  CDS  gene_syn AtRLP6, F2G19.6, F2G19_6, Receptor Like Protein 6  gene AtRLP6  go_component membrane|GO:0016020|17432890|IDA  go_process defense response|GO:0006952||ISS  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product AtRLP6 (Receptor Like Protein 6); protein binding  note Receptor Like Protein 6 (AtRLP6); FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction, defense response; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP7 (Receptor Like Protein 7); kinase/ protein binding (TAIR:AT1G47890.1); Has 78152 Blast hits to 21517 proteins in 883 species: Archae - 45; Bacteria - 5115; Metazoa - 23918; Fungi - 927; Plants - 42008; Viruses - 33; Other Eukaryotes - 6106 (source: NCBI BLink).  protein_id AT1G45616.1p  transcript_id AT1G45616.1  protein_id AT1G45616.1p  transcript_id AT1G45616.1  
At1g45688	chr1:017191502	0.0	W/17191502-17191990,17192207-17192392,17192517-17192870	AT1G45688.1  CDS  gene_syn F2G19.25, F2G19_25  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42860.1); Has 170 Blast hits to 157 proteins in 33 species: Archae - 0; Bacteria - 10; Metazoa - 10; Fungi - 13; Plants - 113; Viruses - 16; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G45688.1p  transcript_id AT1G45688.1  protein_id AT1G45688.1p  transcript_id AT1G45688.1  
At1g45688	chr1:017191502	0.0	W/17191502-17191990,17192207-17192464	AT1G45688.2  CDS  gene_syn F2G19.25, F2G19_25  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42860.1); Has 89 Blast hits to 88 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G45688.2p  transcript_id AT1G45688.2  protein_id AT1G45688.2p  transcript_id AT1G45688.2  
At1g45760	chr1:017194070	0.0	W/17194070-17194801	AT1G45760.1  mRNA_TE_gene  pseudo  gene_syn F2G19.26  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 2.6e-37 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At1g45832	chr1:017196165	0.0	W/17196165-17197506	AT1G45832.1  mRNA_TE_gene  pseudo  gene_syn F2G19.27  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 2.3e-80 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At1g45904	chr1:017198262	0.0	C/17198262-17198818	AT1G45904.1  pseudogenic_transcript  pseudo  gene_syn F2G19.37  note pseudogene, putative NADH-plastoquinone oxidoreductase subunit, blastp match of 52% identity and 1.3e-28 P-value to GP|7636113|emb|CAB88733.1||AJ400848 NADH dehydrogenase 32kDa subunit {Spinacia oleracea}  
At1g45976	chr1:017199371	0.0	W/17199371-17199411,17199527-17199627,17199744-17200072,17200174-17200680	AT1G45976.1  CDS  gene_syn F2G19.22, F2G19_22, SBP1, s-ribonuclease binding protein 1  gene SBP1  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product SBP1 (s-ribonuclease binding protein 1); protein binding / zinc ion binding  note s-ribonuclease binding protein 1 (SBP1); FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G10650.2); Has 850 Blast hits to 850 proteins in 129 species: Archae - 0; Bacteria - 2; Metazoa - 475; Fungi - 4; Plants - 238; Viruses - 48; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT1G45976.1p  transcript_id AT1G45976.1  protein_id AT1G45976.1p  transcript_id AT1G45976.1  
At1g46048	chr1:017202375	0.0	C/17202375-17202565	AT1G46048.1  pseudogenic_transcript  pseudo  gene_syn F2G19.36  note pseudogene, hypothetical protein  
At1g46120	chr1:017203685	0.0	W/17203685-17207422	AT1G46120.1  mRNA_TE_gene  pseudo  gene_syn F2G19.28  note Transposable element gene, copia-like retrotransposon family, has a 1.6e-32 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At1g46192	chr1:017212570	0.0	W/17212570-17217336	AT1G46192.1  mRNA_TE_gene  pseudo  gene_syn F2G19.38  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 7.4e-69 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At1g46264	chr1:017224904	0.0	W/17224904-17225182,17225416-17226183	AT1G46264.1  CDS  gene_syn AT-HSFB4, F2G19.8, F2G19_8, HEAT SHOCK TRANSCRIPTION FACTOR B4, HSFB4  gene HSFB4  function member of Heat Stress Transcription Factor (Hsf) family  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AT-HSFB4; DNA binding / transcription factor  note AT-HSFB4; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: AT-HSFB2B; transcription factor/ transcription repressor (TAIR:AT4G11660.1); Has 1277 Blast hits to 1273 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 261; Fungi - 316; Plants - 451; Viruses - 0; Other Eukaryotes - 249 (source: NCBI BLink).  protein_id AT1G46264.1p  transcript_id AT1G46264.1  protein_id AT1G46264.1p  transcript_id AT1G46264.1  
At1g46336	chr1:017230411	0.0	C/17230411-17230653	AT1G46336.1  CDS  gene_syn F2G19.35, F2G19_35  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G46336.1p  transcript_id AT1G46336.1  protein_id AT1G46336.1p  transcript_id AT1G46336.1  
At1g46408	chr1:017232135	0.0	C/17232135-17232935	AT1G46408.1  CDS  gene_syn AGAMOUS-LIKE 97, AGL97, F2G19.10, F2G19_10  gene AGL97  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product AGL97 (AGAMOUS-LIKE 97); DNA binding / transcription factor  note AGAMOUS-LIKE 97 (AGL97); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: N-terminal protein myristoylation, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL99 (AGAMOUS-LIKE 99); DNA binding / transcription factor (TAIR:AT5G04640.1); Has 3235 Blast hits to 3231 proteins in 408 species: Archae - 0; Bacteria - 2; Metazoa - 422; Fungi - 62; Plants - 2713; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT1G46408.1p  transcript_id AT1G46408.1  protein_id AT1G46408.1p  transcript_id AT1G46408.1  
At1g46480	chr1:017237711	0.0	C/17237711-17237953,17237174-17237491,17236903-17237097	AT1G46480.1  CDS  gene_syn F2G19.11, F2G19_11, WOX4, WUSCHEL RELATED HOMEOBOX 4  gene WOX4  function Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. This protein also contains an acidic domain approximately 10 residues upstream of the WUS box.  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449|11118137|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product WOX4 (WUSCHEL RELATED HOMEOBOX 4); transcription factor  note WUSCHEL RELATED HOMEOBOX 4 (WOX4); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WOX1 (WUSCHEL related homeobox 1); transcription factor (TAIR:AT3G18010.1); Has 307 Blast hits to 305 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 307; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G46480.1p  transcript_id AT1G46480.1  protein_id AT1G46480.1p  transcript_id AT1G46480.1  
At1g46552	chr1:017247859	0.0	C/17247859-17252452	AT1G46552.1  mRNA_TE_gene  pseudo  gene_syn F2G19.34  note Transposable element gene, copia-like retrotransposon family, has a 1.6e-184 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At1g46554	chr1:017252952	0.0	W/17252952-17253903	AT1G46554.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G46554.1  
At1g46624	chr1:017255760	0.0	W/17255760-17261332	AT1G46624.1  mRNA_TE_gene  pseudo  gene_syn F2G19.39  note Transposable element gene, gypsy-like retrotransposon family, has a 4.3e-213 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays)  
At1g46696	chr1:017263887	0.0	C/17263887-17264183,17263619-17263808,17263435-17263506,17262856-17263269,17262625-17262787,17261860-17262574	AT1G46696.1  CDS  gene_syn F2G19.33, F2G19_33  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF601 (InterPro:IPR006736); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G15110.1); Has 2109 Blast hits to 1689 proteins in 274 species: Archae - 16; Bacteria - 228; Metazoa - 830; Fungi - 225; Plants - 93; Viruses - 12; Other Eukaryotes - 705 (source: NCBI BLink).  protein_id AT1G46696.1p  transcript_id AT1G46696.1  protein_id AT1G46696.1p  transcript_id AT1G46696.1  
At1g46768	chr1:017266046	0.0	C/17266046-17266507	AT1G46768.1  CDS  gene_syn F2G19.32, F2G19_32, RAP2.1, related to AP2 1  gene RAP2.1  function encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.1). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.9 and RAP2.10.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product RAP2.1 (related to AP2 1); DNA binding / transcription factor  note related to AP2 1 (RAP2.1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: stem, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: RAP2.10 (related to AP2 10); DNA binding / transcription factor (TAIR:AT4G36900.1); Has 3714 Blast hits to 3631 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3710; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G46768.1p  transcript_id AT1G46768.1  protein_id AT1G46768.1p  transcript_id AT1G46768.1  
At1g46840	chr1:017270185	0.0	W/17270185-17271408,17271503-17271706	AT1G46840.1  CDS  gene_syn F2G19.29, F2G19_29  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: sperm cell, sepal, flower, leaf; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box protein-related (TAIR:AT1G46984.1); Has 781 Blast hits to 748 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 781; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G46840.1p  transcript_id AT1G46840.1  protein_id AT1G46840.1p  transcript_id AT1G46840.1  
At1g46912	chr1:017272691	0.0	W/17272691-17273629	AT1G46912.1  CDS  gene_syn F2G19.20, F2G19_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G46840.1); Has 368 Blast hits to 362 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 368; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G46912.1p  transcript_id AT1G46912.1  protein_id AT1G46912.1p  transcript_id AT1G46912.1  
At1g46984	chr1:017274722	0.0	W/17274722-17275834	AT1G46984.1  CDS  gene_syn F2G19.21, F2G19_21  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box protein-related  note F-box protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G46840.1); Has 710 Blast hits to 681 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 710; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G46984.1p  transcript_id AT1G46984.1  protein_id AT1G46984.1p  transcript_id AT1G46984.1  
At1g47056	chr1:017276103	0.0	C/17276103-17277659	AT1G47056.1  CDS  gene_syn F2G19.16, F2G19_16, VFB1, VIER F-BOX PROTEINE 1  gene VFB1  function Encodes an F-box protein. Based on genetic analysis appears to be functionally redundant with VFB2,3, and 4. When expression of all 4 genes is reduced plants show defects in growth and reduced expression of auxin response genes.  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function ubiquitin-protein ligase activity|GO:0004842|12169662|ISS  product VFB1 (VIER F-BOX PROTEINE 1); ubiquitin-protein ligase  note VIER F-BOX PROTEINE 1 (VFB1); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: stomatal complex, sepal, root, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: VFB3 (VIER F-BOX PROTEINE 3); ubiquitin-protein ligase (TAIR:AT4G07400.1); Has 3173 Blast hits to 1935 proteins in 157 species: Archae - 0; Bacteria - 47; Metazoa - 1397; Fungi - 256; Plants - 1159; Viruses - 0; Other Eukaryotes - 314 (source: NCBI BLink).  protein_id AT1G47056.1p  transcript_id AT1G47056.1  protein_id AT1G47056.1p  transcript_id AT1G47056.1  
At1g47128	chr1:017285135	0.0	C/17285135-17285609,17284358-17284593,17284119-17284259,17283322-17283771,17283139-17283225	AT1G47128.1  CDS  gene_syn F2G19.31, F2G19_31, RD21, RD21A, RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21  gene RD21  function cysteine proteinase precursor-like protein/ dehydration stress-responsive gene (RD21)  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_process response to water deprivation|GO:0009414|8325504|TAS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product RD21 (responsive to dehydration 21); cysteine-type endopeptidase/ cysteine-type peptidase  note responsive to dehydration 21 (RD21); FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: response to water deprivation; LOCATED IN: apoplast, chloroplast, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Granulin (InterPro:IPR000118), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: cysteine proteinase, putative / thiol protease, putative (TAIR:AT5G43060.1); Has 6984 Blast hits to 6282 proteins in 598 species: Archae - 21; Bacteria - 83; Metazoa - 3650; Fungi - 6; Plants - 1232; Viruses - 120; Other Eukaryotes - 1872 (source: NCBI BLink).  protein_id AT1G47128.1p  transcript_id AT1G47128.1  protein_id AT1G47128.1p  transcript_id AT1G47128.1  
At1g47200	chr1:017298181	0.0	C/17298181-17298723	AT1G47200.1  CDS  gene_syn F2G19.18, F2G19_18, WPP DOMAIN PROTEIN 2, WPP2  gene WPP2  function WPP family members contains an NE targeting domain. This domain, called the WPP domain after a highly conserved Trp-Pro-Pro motif, is necessary for NE targeting of WPP1. RNAi suppression of WPP2 resulted in reduced mitotic activity.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component nuclear outer membrane|GO:0005640|15548735|IDA  go_process mitosis|GO:0007067|15548735|IMP  go_process lateral root development|GO:0048527|15548735|IMP  go_function molecular_function|GO:0003674||ND  product WPP2  note WPP2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mitosis, lateral root development; LOCATED IN: plasma membrane, nuclear outer membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: WPP1 (WPP domain protein 1) (TAIR:AT5G43070.1); Has 100 Blast hits to 100 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 5; Plants - 86; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G47200.1p  transcript_id AT1G47200.1  protein_id AT1G47200.1p  transcript_id AT1G47200.1  
At1g47210	chr1:017301036	0.0	W/17301036-17301377,17301459-17301691,17301776-17301928,17302014-17302197,17302296-17302430,17302513-17302584	AT1G47210.2  CDS  gene_syn CYCA3;2, CYCLIN-DEPENDENT PROTEIN KINASE 3;2, F8G22.8, F8G22_8  gene CYCA3;2  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase activity|GO:0004693||ISS  product cyclin family protein  note CYCLIN-DEPENDENT PROTEIN KINASE 3;2 (CYCA3;2); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: G2/mitotic-specific cyclin A (InterPro:IPR015453), Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: cyclin, putative (TAIR:AT1G47230.1); Has 3364 Blast hits to 3358 proteins in 295 species: Archae - 0; Bacteria - 0; Metazoa - 1743; Fungi - 359; Plants - 731; Viruses - 35; Other Eukaryotes - 496 (source: NCBI BLink).  protein_id AT1G47210.2p  transcript_id AT1G47210.2  protein_id AT1G47210.2p  transcript_id AT1G47210.2  
At1g47210	chr1:017301036	0.0	W/17301036-17301377,17301459-17301695	AT1G47210.1  CDS  gene_syn CYCA3;2, CYCLIN-DEPENDENT PROTEIN KINASE 3;2, F8G22.8, F8G22_8  gene CYCA3;2  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase activity|GO:0004693||ISS  product cyclin family protein  note CYCLIN-DEPENDENT PROTEIN KINASE 3;2 (CYCA3;2); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: G2/mitotic-specific cyclin A (InterPro:IPR015453), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400); BEST Arabidopsis thaliana protein match is: CYCA3;3 (Cyclin A3;3); cyclin-dependent protein kinase regulator (TAIR:AT1G47220.1); Has 2554 Blast hits to 2553 proteins in 266 species: Archae - 0; Bacteria - 0; Metazoa - 1362; Fungi - 342; Plants - 484; Viruses - 27; Other Eukaryotes - 339 (source: NCBI BLink).  protein_id AT1G47210.1p  transcript_id AT1G47210.1  protein_id AT1G47210.1p  transcript_id AT1G47210.1  
At1g47220	chr1:017303676	0.0	W/17303676-17303879,17304053-17304285,17304389-17304541,17304622-17304805,17304904-17305038,17305123-17305197	AT1G47220.1  CDS  gene_syn CYCA3;3, Cyclin A3;3, F8G22.6, F8G22_6  gene CYCA3;3  go_component nucleus|GO:0005634||IEA  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase regulator activity|GO:0016538||ISS  product CYCA3;3 (Cyclin A3;3); cyclin-dependent protein kinase regulator  note Cyclin A3;3 (CYCA3;3); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin (InterPro:IPR006670), G2/mitotic-specific cyclin A (InterPro:IPR015453), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400); BEST Arabidopsis thaliana protein match is: cyclin family protein (TAIR:AT1G47210.2); Has 3371 Blast hits to 3363 proteins in 297 species: Archae - 0; Bacteria - 0; Metazoa - 1739; Fungi - 374; Plants - 726; Viruses - 32; Other Eukaryotes - 500 (source: NCBI BLink).  protein_id AT1G47220.1p  transcript_id AT1G47220.1  protein_id AT1G47220.1p  transcript_id AT1G47220.1  
At1g47230	chr1:017306752	0.0	W/17306752-17307072,17307345-17307577,17307672-17307827,17307928-17307961,17308052-17308201,17308284-17308418,17308504-17308587	AT1G47230.2  CDS  gene_syn CYCA3;4, CYCLIN A3;4, F8G22.5, F8G22_5  gene CYCA3;4  go_component nucleus|GO:0005634||IEA  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase regulator activity|GO:0016538||ISS  product cyclin, putative  note CYCLIN A3;4 (CYCA3;4); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin (InterPro:IPR006670), G2/mitotic-specific cyclin A (InterPro:IPR015453), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400); BEST Arabidopsis thaliana protein match is: cyclin family protein (TAIR:AT1G47210.2); Has 3253 Blast hits to 3252 proteins in 293 species: Archae - 0; Bacteria - 0; Metazoa - 1697; Fungi - 357; Plants - 705; Viruses - 32; Other Eukaryotes - 462 (source: NCBI BLink).  protein_id AT1G47230.2p  transcript_id AT1G47230.2  protein_id AT1G47230.2p  transcript_id AT1G47230.2  
At1g47230	chr1:017306752	0.0	W/17306752-17307072,17307345-17307577,17307675-17307827,17307928-17307961,17308052-17308201,17308284-17308418,17308504-17308587	AT1G47230.1  CDS  gene_syn CYCA3;4, CYCLIN A3;4, F8G22.5, F8G22_5  gene CYCA3;4  go_component nucleus|GO:0005634||IEA  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase regulator activity|GO:0016538||ISS  product cyclin, putative  note CYCLIN A3;4 (CYCA3;4); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin (InterPro:IPR006670), G2/mitotic-specific cyclin A (InterPro:IPR015453), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400); BEST Arabidopsis thaliana protein match is: cyclin family protein (TAIR:AT1G47210.2); Has 3346 Blast hits to 3345 proteins in 294 species: Archae - 0; Bacteria - 0; Metazoa - 1729; Fungi - 359; Plants - 728; Viruses - 35; Other Eukaryotes - 495 (source: NCBI BLink).  protein_id AT1G47230.1p  transcript_id AT1G47230.1  protein_id AT1G47230.1p  transcript_id AT1G47230.1  
At1g47240	chr1:017310737	0.0	C/17310737-17311308,17310230-17310366,17309489-17310141,17309043-17309273	AT1G47240.1  CDS  gene_syn ATNRAMP2, F8G22.4, F8G22_4, NRAMP METAL ION TRANSPORTER 2, NRAMP2  gene NRAMP2  function Member of the NRAMP2 gene family of metal ion transporters.  go_component membrane|GO:0016020||IEA  go_process cellular metal ion homeostasis|GO:0006875|11500563|NAS  go_process metal ion transport|GO:0030001|11500563|NAS  go_process metal ion transport|GO:0030001||ISS  go_function inorganic anion transmembrane transporter activity|GO:0015103||ISS  go_function metal ion transmembrane transporter activity|GO:0046873|11500563|NAS  go_function metal ion transmembrane transporter activity|GO:0046873||ISS  product NRAMP2; inorganic anion transmembrane transporter/ metal ion transmembrane transporter  note NRAMP2; FUNCTIONS IN: inorganic anion transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: cellular metal ion homeostasis, metal ion transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Natural resistance-associated macrophage protein (InterPro:IPR001046); BEST Arabidopsis thaliana protein match is: NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3); inorganic anion transmembrane transporter/ manganese ion transmembrane transporter/ metal ion transmembrane transporter (TAIR:AT2G23150.1); Has 2802 Blast hits to 2779 proteins in 785 species: Archae - 46; Bacteria - 1800; Metazoa - 313; Fungi - 162; Plants - 195; Viruses - 0; Other Eukaryotes - 286 (source: NCBI BLink).  protein_id AT1G47240.1p  transcript_id AT1G47240.1  protein_id AT1G47240.1p  transcript_id AT1G47240.1  
At1g47250	chr1:017319220	0.0	W/17319220-17319570,17320418-17320900	AT1G47250.1  CDS  gene_syn 20S PROTEASOME ALPHA SUBUNIT F2, 20S PROTEASOME SUBUNIT PAF2, F8G22.3, F8G22_3, PAF2  gene PAF2  function Encodes 20S proteasome subunit PAF2 (PAF2).  go_component plasma membrane|GO:0005886|17317660|IDA  go_function endopeptidase activity|GO:0004175||IEA  go_function threonine-type endopeptidase activity|GO:0004298||IEA  go_component proteasome core complex|GO:0005839|9373170|TAS  go_component proteasome core complex|GO:0005839|9611183|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_function peptidase activity|GO:0008233||ISS  product PAF2; endopeptidase/ peptidase/ threonine-type endopeptidase  note PAF2; FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome alpha-subunit, conserved site (InterPro:IPR000426), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: PAF1; endopeptidase/ peptidase/ threonine-type endopeptidase (TAIR:AT5G42790.1); Has 4244 Blast hits to 4244 proteins in 338 species: Archae - 480; Bacteria - 0; Metazoa - 1584; Fungi - 936; Plants - 503; Viruses - 0; Other Eukaryotes - 741 (source: NCBI BLink).  protein_id AT1G47250.1p  transcript_id AT1G47250.1  protein_id AT1G47250.1p  transcript_id AT1G47250.1  
At1g47260	chr1:017323233	0.0	C/17323233-17323347,17322941-17323084,17322555-17322680,17322301-17322452,17321384-17321683	AT1G47260.1  CDS  gene_syn APFI, F8G22.2, F8G22_2, GAMMA CA2, GAMMA CARBONIC ANHYDRASE, GAMMA CARBONIC ANHYDRASE 2  gene GAMMA CA2  function Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.  go_component mitochondrion|GO:0005739|15276431|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|12837548|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|15604675|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_component mitochondrial membrane|GO:0031966|16407270|IDA  go_component respiratory chain complex I|GO:0045271|16407270|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process photorespiration|GO:0009853|16407270|TAS  go_process anther dehiscence|GO:0009901|19326245|IMP  go_process regulation of oxygen and reactive oxygen species metabolic process|GO:0080010|19326245|IMP  go_function carbonate dehydratase activity|GO:0004089|16407270|ISS  product GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2); carbonate dehydratase  note GAMMA CARBONIC ANHYDRASE 2 (GAMMA CA2); FUNCTIONS IN: carbonate dehydratase activity; INVOLVED IN: response to salt stress, anther dehiscence, regulation of oxygen and reactive oxygen species metabolic process, photorespiration; LOCATED IN: in 6 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), Bacterial transferase hexapeptide repeat (InterPro:IPR001451); BEST Arabidopsis thaliana protein match is: GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1); carbonate dehydratase (TAIR:AT1G19580.1); Has 7572 Blast hits to 7538 proteins in 1241 species: Archae - 199; Bacteria - 4377; Metazoa - 45; Fungi - 69; Plants - 137; Viruses - 0; Other Eukaryotes - 2745 (source: NCBI BLink).  protein_id AT1G47260.1p  transcript_id AT1G47260.1  protein_id AT1G47260.1p  transcript_id AT1G47260.1  
At1g47265	chr1:017324568	0.0	W/17324568-17324798	AT1G47265.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G47265.1p  transcript_id AT1G47265.1  protein_id AT1G47265.1p  transcript_id AT1G47265.1  
At1g47270	chr1:017326828	0.0	W/17326828-17326848,17327043-17327086,17327158-17327488,17327563-17327650,17327732-17327864,17327940-17328564	AT1G47270.1  CDS  gene_syn AtTLP6, F8G22.1, F8G22_1, TUBBY LIKE PROTEIN 6  gene AtTLP6  function Member of TLP family  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function phosphoric diester hydrolase activity|GO:0008081||ISS  product AtTLP6 (TUBBY LIKE PROTEIN 6); phosphoric diester hydrolase/ transcription factor  note TUBBY LIKE PROTEIN 6 (AtTLP6); FUNCTIONS IN: transcription factor activity, phosphoric diester hydrolase activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: AtTLP2 (TUBBY LIKE PROTEIN 2); phosphoric diester hydrolase/ transcription factor (TAIR:AT2G18280.2); Has 676 Blast hits to 671 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 292; Fungi - 2; Plants - 302; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT1G47270.1p  transcript_id AT1G47270.1  protein_id AT1G47270.1p  transcript_id AT1G47270.1  
At1g47271	chr1:017328856	0.0	W/17328856-17329077,17329608-17329689,17329861-17329934,17330030-17330090,17330201-17330343	AT1G47271.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein (TAIR:AT5G10860.1); Has 5358 Blast hits to 5270 proteins in 1084 species: Archae - 620; Bacteria - 3536; Metazoa - 1; Fungi - 100; Plants - 159; Viruses - 0; Other Eukaryotes - 942 (source: NCBI BLink).  protein_id AT1G47271.1p  transcript_id AT1G47271.1  protein_id AT1G47271.1p  transcript_id AT1G47271.1  
At1g47278	chr1:017331263	0.0	W/17331263-17331277,17331365-17331553,17331655-17331726	AT1G47278.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 22 Blast hits to 22 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G47278.2p  transcript_id AT1G47278.2  protein_id AT1G47278.2p  transcript_id AT1G47278.2  
At1g47278	chr1:017331383	0.0	W/17331383-17331553,17331655-17331726	AT1G47278.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 22 Blast hits to 22 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G47278.1p  transcript_id AT1G47278.1  protein_id AT1G47278.1p  transcript_id AT1G47278.1  
At1g47280	chr1:017334108	0.0	C/17334108-17334310,17332241-17332280	AT1G47280.1  CDS  gene_syn T3F24.20, T3F24_20  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G47280.1p  transcript_id AT1G47280.1  protein_id AT1G47280.1p  transcript_id AT1G47280.1  
At1g47290	chr1:017336121	0.0	W/17336121-17336364,17336441-17336530,17336623-17336756,17336857-17337027,17337357-17337482,17337972-17338051,17338156-17338354,17338456-17338522,17338822-17339030	AT1G47290.2  CDS  gene_syn 3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1, AT3BETAHSD/D, AT3BETAHSD/D1, T3F24.9, T3F24_9  gene AT3BETAHSD/D1  function Encodes an enzyme with 3& 946;-hydroxysteroid dehydrogenase/C4-decarboxylase activity <i>in vitro</i>. The activity of the enzyme was determined using microsomal extracts of yeast overexpressing the <i>Arabidopsis</i> gene. Cytosolic fractions failed to be associated to the activity, leading to the speculation that the enzyme is membrane-bound.  go_process steroid biosynthetic process|GO:0006694||IEA  go_process metabolic process|GO:0008152||IEA  go_component membrane|GO:0016020|16835224|IDA  go_process steroid biosynthetic process|GO:0006694||ISS  go_function 3-beta-hydroxy-delta5-steroid dehydrogenase activity|GO:0003854||ISS  go_function sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity|GO:0047012|16835224|IDA  go_function sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity|GO:0047012|16835224|IGI  product AT3BETAHSD/D1 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1); 3-beta-hydroxy-delta5-steroid dehydrogenase/ sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating)  note 3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1 (AT3BETAHSD/D1); FUNCTIONS IN: 3-beta-hydroxy-delta5-steroid dehydrogenase activity, sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity; INVOLVED IN: steroid biosynthetic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 3-beta hydroxysteroid dehydrogenase/isomerase (InterPro:IPR002225), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: AT3BETAHSD/D2 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 2); 3-beta-hydroxy-delta5-steroid dehydrogenase/ sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) (TAIR:AT2G26260.1); Has 16565 Blast hits to 16554 proteins in 1661 species: Archae - 348; Bacteria - 8785; Metazoa - 614; Fungi - 361; Plants - 924; Viruses - 125; Other Eukaryotes - 5408 (source: NCBI BLink).  protein_id AT1G47290.2p  transcript_id AT1G47290.2  protein_id AT1G47290.2p  transcript_id AT1G47290.2  
At1g47290	chr1:017336121	0.0	W/17336121-17336364,17336441-17336530,17336623-17336756,17336857-17337027,17337357-17337482,17337972-17338051,17338156-17338354,17338456-17338522,17338993-17339030	AT1G47290.1  CDS  gene_syn 3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1, AT3BETAHSD/D, AT3BETAHSD/D1, T3F24.9, T3F24_9  gene AT3BETAHSD/D1  function Encodes an enzyme with 3& 946;-hydroxysteroid dehydrogenase/C4-decarboxylase activity <i>in vitro</i>. The activity of the enzyme was determined using microsomal extracts of yeast overexpressing the <i>Arabidopsis</i> gene. Cytosolic fractions failed to be associated to the activity, leading to the speculation that the enzyme is membrane-bound.  go_process steroid biosynthetic process|GO:0006694||IEA  go_process metabolic process|GO:0008152||IEA  go_component membrane|GO:0016020|16835224|IDA  go_process steroid biosynthetic process|GO:0006694||ISS  go_function 3-beta-hydroxy-delta5-steroid dehydrogenase activity|GO:0003854||ISS  go_function sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity|GO:0047012|16835224|IDA  go_function sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity|GO:0047012|16835224|IGI  product AT3BETAHSD/D1 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1); 3-beta-hydroxy-delta5-steroid dehydrogenase/ sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating)  note 3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1 (AT3BETAHSD/D1); FUNCTIONS IN: 3-beta-hydroxy-delta5-steroid dehydrogenase activity, sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity; INVOLVED IN: steroid biosynthetic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 3-beta hydroxysteroid dehydrogenase/isomerase (InterPro:IPR002225), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: AT3BETAHSD/D2 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 2); 3-beta-hydroxy-delta5-steroid dehydrogenase/ sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) (TAIR:AT2G26260.1); Has 16568 Blast hits to 16557 proteins in 1661 species: Archae - 348; Bacteria - 8782; Metazoa - 616; Fungi - 361; Plants - 926; Viruses - 125; Other Eukaryotes - 5410 (source: NCBI BLink).  protein_id AT1G47290.1p  transcript_id AT1G47290.1  protein_id AT1G47290.1p  transcript_id AT1G47290.1  
At1g47300	chr1:017340475	0.0	C/17340475-17340972,17340018-17340099,17339806-17339949,17339561-17339757	AT1G47300.1  CDS  gene_syn T3F24.8, T3F24_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G47340.1); Has 67721 Blast hits to 14490 proteins in 662 species: Archae - 192; Bacteria - 977; Metazoa - 35845; Fungi - 5082; Plants - 2943; Viruses - 1618; Other Eukaryotes - 21064 (source: NCBI BLink).  protein_id AT1G47300.1p  transcript_id AT1G47300.1  protein_id AT1G47300.1p  transcript_id AT1G47300.1  
At1g47310	chr1:017343082	0.0	W/17343082-17343207,17343278-17343595,17343875-17344618	AT1G47310.1  CDS  gene_syn T3F24.7, T3F24_7  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 28 Blast hits to 28 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G47310.1p  transcript_id AT1G47310.1  protein_id AT1G47310.1p  transcript_id AT1G47310.1  
At1g47317	chr1:017347094	0.0	W/17347094-17347145,17347256-17347515	AT1G47317.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25185.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G47317.1p  transcript_id AT1G47317.1  protein_id AT1G47317.1p  transcript_id AT1G47317.1  
At1g47320	chr1:017349099	0.0	W/17349099-17350163	AT1G47320.1  mRNA_TE_gene  pseudo  gene_syn T3F24.22, T3F24_22  note Transposable element gene, similar to nucleic acid binding / ribonuclease H [Arabidopsis thaliana] (TAIR:AT2G27870.1); similar to Ribonuclease H [Medicago truncatula] (GB:ABE81233.1); contains InterPro domain Ribonuclease H; (InterPro:IPR002156); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)  
At1g47330	chr1:017351149	0.0	W/17351149-17351326,17351443-17351519,17351603-17351686,17351779-17351892,17352011-17352097,17352252-17352391,17352495-17352582,17352660-17352733,17352825-17353042,17353123-17353349,17353443-17353739	AT1G47330.1  CDS  gene_syn T3F24.6, T3F24_6  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein (TAIR:AT2G14520.1); Has 6970 Blast hits to 6717 proteins in 1361 species: Archae - 64; Bacteria - 4382; Metazoa - 390; Fungi - 183; Plants - 125; Viruses - 0; Other Eukaryotes - 1826 (source: NCBI BLink).  protein_id AT1G47330.1p  transcript_id AT1G47330.1  protein_id AT1G47330.1p  transcript_id AT1G47330.1  
At1g47340	chr1:017356422	0.0	C/17356422-17356494,17354123-17355429	AT1G47340.1  CDS  gene_syn T3F24.5, T3F24_5  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein-related (TAIR:AT1G47350.1); Has 981 Blast hits to 944 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 976; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G47340.1p  transcript_id AT1G47340.1  protein_id AT1G47340.1p  transcript_id AT1G47340.1  
At1g47350	chr1:017360332	0.0	C/17360332-17360722,17360025-17360093,17358447-17359573	AT1G47350.1  CDS  gene_syn T3F24.4, T3F24_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G47340.1); Has 410 Blast hits to 398 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 410; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G47350.1p  transcript_id AT1G47350.1  protein_id AT1G47350.1p  transcript_id AT1G47350.1  
At1g47360	chr1:017361270	0.0	W/17361270-17365328	AT1G47360.1  mRNA_TE_gene  pseudo  gene_syn T3F24.10, T3F24_10  note Transposable element gene, copia-like retrotransposon family, has a 1.2e-307 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At1g47370	chr1:017368477	0.0	C/17368477-17368703,17368017-17368262,17366987-17367077,17366738-17366886,17366575-17366642,17366235-17366372,17365898-17366070	AT1G47370.1  CDS  gene_syn T3F24.3, T3F24_3  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_process defense response|GO:0006952||ISS  product Toll-Interleukin-Resistance (TIR) domain-containing protein  note Toll-Interleukin-Resistance (TIR) domain-containing protein; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Toll-Interleukin-Resistance (TIR) domain-containing protein (TAIR:AT2G03300.1); Has 834 Blast hits to 798 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 834; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G47370.1p  transcript_id AT1G47370.1  protein_id AT1G47370.1p  transcript_id AT1G47370.1  
At1g47380	chr1:017375108	0.0	C/17375108-17375305,17374858-17375029,17374571-17374724,17374418-17374481,17374041-17374148,17373796-17373921,17373469-17373704,17373148-17373350,17373004-17373029	AT1G47380.1  CDS  gene_syn T3F24.2, T3F24_2  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C-related / PP2C-related  note protein phosphatase 2C-related / PP2C-related; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C-related / PP2C-related (TAIR:AT1G68410.2); Has 3381 Blast hits to 3380 proteins in 277 species: Archae - 0; Bacteria - 130; Metazoa - 984; Fungi - 302; Plants - 1151; Viruses - 7; Other Eukaryotes - 807 (source: NCBI BLink).  protein_id AT1G47380.1p  transcript_id AT1G47380.1  protein_id AT1G47380.1p  transcript_id AT1G47380.1  
At1g47389	chr1:017378652	0.0	W/17378652-17379374	AT1G47389.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT1G47389.1p  transcript_id AT1G47389.1  protein_id AT1G47389.1p  transcript_id AT1G47389.1  
At1g47390	chr1:017379544	0.0	W/17379544-17380656	AT1G47390.1  CDS  gene_syn T3F24.1, T3F24_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G32430.1); Has 748 Blast hits to 732 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 746; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G47390.1p  transcript_id AT1G47390.1  protein_id AT1G47390.1p  transcript_id AT1G47390.1  
At1g47395	chr1:017383117	0.0	W/17383117-17383269	AT1G47395.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G47395.1p  transcript_id AT1G47395.1  protein_id AT1G47395.1p  transcript_id AT1G47395.1  
At1g47400	chr1:017385818	0.0	W/17385818-17385970	AT1G47400.1  CDS  gene_syn T3F24.21, T3F24_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47395.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G47400.1p  transcript_id AT1G47400.1  protein_id AT1G47400.1p  transcript_id AT1G47400.1  
At1g47405	chr1:017389679	0.0	W/17389679-17390781	AT1G47405.1  mRNA_TE_gene  pseudo  gene_syn T3F24.14  note Transposable element gene, pseudogene, similar to SAE1-S9-protein, similar to putative non-LTR retroelement reverse transcriptase GB:AAC63678 (Arabidopsis thaliana) from (; blastp match of 39% identity and 2.2e-18 P-value to GP|4760708|dbj|BAA77394.1||AB012866 SAE1-S9-protein {Brassica rapa}  
At1g47410	chr1:017394818	0.0	W/17394818-17394964,17395086-17395508	AT1G47410.1  CDS  gene_syn T3F24.15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 11 Blast hits to 11 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G47410.1p  transcript_id AT1G47410.1  protein_id AT1G47410.1p  transcript_id AT1G47410.1  
At1g47420	chr1:017397062	0.0	C/17397062-17397176,17396815-17396919,17396397-17396707,17396134-17396319,17395774-17395830	AT1G47420.1  CDS  gene_syn T3F24.12  go_component nucleus|GO:0005634|14617066|IDA  go_component mitochondrion|GO:0005739|15276431|IDA  go_component mitochondrion|GO:0005739|11743114|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2); carbonate dehydratase (TAIR:AT1G47260.1); Has 85 Blast hits to 85 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G47420.1p  transcript_id AT1G47420.1  protein_id AT1G47420.1p  transcript_id AT1G47420.1  
At1g47430	chr1:017397502	0.0	W/17397502-17398191	AT1G47430.1  pseudogenic_transcript  pseudo  gene_syn T3F24.16  note pseudogene, similar to OSJNBb0041J06.18, blastp match of 25% identity and 3.9e-10 P-value to GP|27818010|dbj|BAC55773.1||AP005176 OSJNBb0041J06.18 {Oryza sativa (japonica cultivar-group)}  
At1g47435	chr1:017399465	0.0	W/17399465-17400740	AT1G47435.1  mRNA_TE_gene  pseudo  gene_syn T3F24.17  note Transposable element gene, pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 30% identity and 5.0e-49 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}  
At1g47440	chr1:017400933	0.0	W/17400933-17402268	AT1G47440.1  pseudogenic_transcript  pseudo  gene_syn T3F24.18  note pseudogene, putative S-locus-specific glyco protein SLR1 precursor, similar to S-locus-specific glycoprotein SLR1 precursor GB:S20489 GI:99660 from (Arabidopsis thaliana); blastp match of 67% identity and 1.6e-109 P-value to GP|21321208|dbj|BAB97355.1||AB075407 S-locus-related I {Brassica amplexicaulis}  
At1g47450	chr1:017402684	0.0	C/17402684-17403193	AT1G47450.1  CDS  gene_syn T3F24.13  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47470.1); Has 27 Blast hits to 27 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G47450.1p  transcript_id AT1G47450.1  protein_id AT1G47450.1p  transcript_id AT1G47450.1  
At1g47460	chr1:017403894	0.0	W/17403894-17404298	AT1G47460.1  pseudogenic_transcript  pseudo  gene_syn T3F24.19  note pseudogene, putative S-locus-specific glyco protein SLR1 precursor, similar to S-locus-specific glycoprotein SLR1 precursor GB:S20489 GI:99660 from (Arabidopsis thaliana); blastp match of 55% identity and 1.4e-28 P-value to GP|21321240|dbj|BAB97371.1||AB075423 S-locus-related I {Lunaria annua}  
At1g47465	chr1:017406820	0.0	C/17406820-17407592	AT1G47465.1  mRNA_TE_gene  pseudo  gene_syn F16N3.38  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 9.7e-17 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At1g47470	chr1:017414611	0.0	C/17414611-17415132	AT1G47470.1  CDS  gene_syn F16N3.31, F16N3_31  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, sepal; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G45190.1); Has 42 Blast hits to 42 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G47470.1p  transcript_id AT1G47470.1  protein_id AT1G47470.1p  transcript_id AT1G47470.1  
At1g47480	chr1:017417623	0.0	W/17417623-17417963,17418693-17419296	AT1G47480.1  CDS  gene_syn F16N3.25, F16N3_25  go_process metabolic process|GO:0008152||IEA  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  product hydrolase  note hydrolase; FUNCTIONS IN: hydrolase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDXG, active site (InterPro:IPR002168), Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: ATCXE13 (ARABIDOPSIS THALIANA CARBOXYESTERASE 13); hydrolase (TAIR:AT3G48700.1); Has 5187 Blast hits to 5177 proteins in 806 species: Archae - 47; Bacteria - 2656; Metazoa - 445; Fungi - 493; Plants - 650; Viruses - 3; Other Eukaryotes - 893 (source: NCBI BLink).  protein_id AT1G47480.1p  transcript_id AT1G47480.1  protein_id AT1G47480.1p  transcript_id AT1G47480.1  
At1g47485	chr1:017422564	0.0	W/17422564-17422839	AT1G47485.1  CDS  function Encodes CEP1, a 15-amino-acid peptide, which is mainly expressed in the lateral root primordia. When overexpressed or externally applied, CEP1 arrests root growth. CEP1 is a candidate for a novel peptide plant hormone.  go_component endomembrane system|GO:0012505||IEA  go_process root development|GO:0048364|18315543|IMP  go_process lateral root development|GO:0048527|18315543|IEP  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: root development, lateral root development; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apical meristem, inflorescence meristem, flower, lateral root primordium; EXPRESSED DURING: petal differentiation and expansion stage; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G47485.1p  transcript_id AT1G47485.1  protein_id AT1G47485.1p  transcript_id AT1G47485.1  
At1g47490	chr1:017424801	0.0	W/17424801-17425178,17425407-17425884,17426038-17426096,17426210-17426340,17426421-17426517,17427027-17427182	AT1G47490.1  CDS  gene_syn ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C, ATRBP47C, F16N3.24, F16N3_24  gene ATRBP47C  go_function RNA binding|GO:0003723|11105760|ISS  product ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C); RNA binding  note ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C (ATRBP47C); FUNCTIONS IN: RNA binding; EXPRESSED IN: stem, flower, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: ATRBP47C  (RNA-binding protein 47C ); RNA binding (TAIR:AT1G47500.1); Has 25826 Blast hits to 16086 proteins in 675 species: Archae - 16; Bacteria - 1387; Metazoa - 14866; Fungi - 2684; Plants - 4292; Viruses - 82; Other Eukaryotes - 2499 (source: NCBI BLink).  protein_id AT1G47490.1p  transcript_id AT1G47490.1  protein_id AT1G47490.1p  transcript_id AT1G47490.1  
At1g47490	chr1:017424801	0.0	W/17424801-17425178,17425407-17425884,17426038-17426114	AT1G47490.2  CDS  gene_syn ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C, ATRBP47C, F16N3.24, F16N3_24  gene ATRBP47C  go_function RNA binding|GO:0003723|11105760|ISS  product ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C); RNA binding  note ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C (ATRBP47C); FUNCTIONS IN: RNA binding; EXPRESSED IN: stem, flower, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: ATRBP47C  (RNA-binding protein 47C ); RNA binding (TAIR:AT1G47500.1); Has 15186 Blast hits to 10905 proteins in 636 species: Archae - 6; Bacteria - 1064; Metazoa - 7864; Fungi - 1649; Plants - 3008; Viruses - 82; Other Eukaryotes - 1513 (source: NCBI BLink).  protein_id AT1G47490.2p  transcript_id AT1G47490.2  protein_id AT1G47490.2p  transcript_id AT1G47490.2  
At1g47495	chr1:017429671	0.0	C/17429671-17429813,17429271-17429331,17428945-17429169	AT1G47495.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45403.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G47495.1p  transcript_id AT1G47495.1  protein_id AT1G47495.1p  transcript_id AT1G47495.1  
At1g47497	chr1:017431038	0.0	C/17431038-17431454	AT1G47497.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT2G46460.1); Has 77 Blast hits to 77 proteins in 7 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G47497.1p  transcript_id AT1G47497.1  protein_id AT1G47497.1p  transcript_id AT1G47497.1  
At1g47500	chr1:017432682	0.0	W/17432682-17433065,17433291-17433768,17433883-17433941,17434025-17434155,17434239-17434335,17434650-17434805	AT1G47500.1  CDS  gene_syn ATRBP47C , F16N3.23, F16N3_23, RNA-binding protein 47C   gene ATRBP47C   go_function RNA binding|GO:0003723|11105760|ISS  product ATRBP47C  (RNA-binding protein 47C ); RNA binding  note RNA-binding protein 47C  (ATRBP47C ); FUNCTIONS IN: RNA binding; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C); RNA binding (TAIR:AT1G47490.1); Has 24867 Blast hits to 15711 proteins in 653 species: Archae - 18; Bacteria - 1383; Metazoa - 14340; Fungi - 2609; Plants - 4050; Viruses - 46; Other Eukaryotes - 2421 (source: NCBI BLink).  protein_id AT1G47500.1p  transcript_id AT1G47500.1  protein_id AT1G47500.1p  transcript_id AT1G47500.1  
At1g47510	chr1:017438253	0.0	C/17438253-17438296,17437970-17438123,17437729-17437859,17437494-17437570,17437146-17437271,17436878-17437053,17435991-17436287	AT1G47510.1  CDS  gene_syn 5PTASE11, ARABIDOPSIS THALIANA INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 11, AT5PTASE11, F16N3.22, F16N3_22, INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 11  gene 5PTASE11  function Encodes a phosphatidylinositol polyphosphate 5-phosphatase. It can dephosphorylate PI(4,5)P2, PI(3,5)P2, and PI(3,4,5)P3, but, it is not active against PI(5)P or the water soluble inositol(1,4,5)P3 or inositol(1,3,4,5)P4. The transcript levels for this gene rise in response to auxin, ABA, and JA.  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process response to auxin stimulus|GO:0009733|15181205|IEP  go_process response to abscisic acid stimulus|GO:0009737|15181205|IEP  go_process response to jasmonic acid stimulus|GO:0009753|15181205|IEP  go_process phosphoinositide dephosphorylation|GO:0046856|15181205|IDA  go_function phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|GO:0004439|15181205|IDA  go_function hydrolase activity|GO:0016787||ISS  go_function phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity|GO:0034485|15181205|IDA  go_function phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity|GO:0043813|15181205|IDA  product 5PTASE11 (INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 11); hydrolase/ phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase/ phosphatidylinositol-3,5-bisphosphate 5-phosphatase/ phosphatidylinositol-4,5-bisphosphate 5-phosphatase  note INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 11 (5PTASE11); FUNCTIONS IN: hydrolase activity, phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity, phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity, phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity; INVOLVED IN: response to jasmonic acid stimulus, response to auxin stimulus, N-terminal protein myristoylation, phosphoinositide dephosphorylation, response to abscisic acid stimulus; EXPRESSED IN: shoot, rosette leaf, cauline leaf, root, flower; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: FRA3 (FRAGILE FIBER3); inositol or phosphatidylinositol phosphatase (TAIR:AT1G65580.1); Has 1373 Blast hits to 1352 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 585; Fungi - 333; Plants - 238; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).  protein_id AT1G47510.1p  transcript_id AT1G47510.1  protein_id AT1G47510.1p  transcript_id AT1G47510.1  
At1g47520	chr1:017443288	0.0	W/17443288-17446628	AT1G47520.1  mRNA_TE_gene  pseudo  gene_syn F16N3.36, F16N3_36  note Transposable element gene, copia-like retrotransposon family, has a 3.3e-256 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At1g47530	chr1:017451724	0.0	W/17451724-17451993,17452389-17452584,17452674-17453019,17453116-17453202,17453288-17453344,17453437-17453794,17453877-17453963,17454057-17454110	AT1G47530.1  CDS  gene_syn F16N3.20, F16N3_20  go_component plasma membrane|GO:0005886|17151019|IDA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_process ripening|GO:0009835||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product ripening-responsive protein, putative  note ripening-responsive protein, putative; FUNCTIONS IN: antiporter activity, drug transporter activity, transporter activity; INVOLVED IN: multidrug transport, ripening; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G12950.1); Has 5502 Blast hits to 5451 proteins in 1087 species: Archae - 111; Bacteria - 3572; Metazoa - 119; Fungi - 206; Plants - 709; Viruses - 0; Other Eukaryotes - 785 (source: NCBI BLink).  protein_id AT1G47530.1p  transcript_id AT1G47530.1  protein_id AT1G47530.1p  transcript_id AT1G47530.1  
At1g47540	chr1:017456086	0.0	C/17456086-17456146,17455702-17455937	AT1G47540.1  CDS  gene_syn F16N3.19, F16N3_19  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||IEA  go_function ion channel inhibitor activity|GO:0008200||IEA  product trypsin inhibitor, putative  note trypsin inhibitor, putative; FUNCTIONS IN: ion channel inhibitor activity; INVOLVED IN: defense response; LOCATED IN: endomembrane system, extracellular region; CONTAINS InterPro DOMAIN/s: Scorpion long chain toxin (InterPro:IPR002061), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: ATTI2; serine-type endopeptidase inhibitor (TAIR:AT2G43520.1); Has 129 Blast hits to 129 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G47540.1p  transcript_id AT1G47540.1  protein_id AT1G47540.1p  transcript_id AT1G47540.1  
At1g47540	chr1:017456086	0.0	C/17456086-17456146,17455702-17455940	AT1G47540.2  CDS  gene_syn F16N3.19, F16N3_19  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||IEA  go_function ion channel inhibitor activity|GO:0008200||IEA  product trypsin inhibitor, putative  note trypsin inhibitor, putative; FUNCTIONS IN: ion channel inhibitor activity; INVOLVED IN: defense response; LOCATED IN: endomembrane system, extracellular region; CONTAINS InterPro DOMAIN/s: Scorpion long chain toxin (InterPro:IPR002061), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: trypsin inhibitor, putative (TAIR:AT2G43535.1); Has 129 Blast hits to 129 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G47540.2p  transcript_id AT1G47540.2  protein_id AT1G47540.2p  transcript_id AT1G47540.2  
At1g47550	chr1:017457171	0.0	W/17457171-17457345,17458136-17458206,17458377-17458457,17458615-17458682,17458807-17458909,17459084-17459232,17459645-17459762,17459871-17459975,17460256-17460357,17460432-17460569,17460748-17460876,17460959-17461039,17461119-17461193,17461373-17461543,17461637-17461793,17461893-17461957,17462054-17462224,17462309-17462388,17462537-17462618,17462842-17462939,17463028-17463136,17463257-17463325,17463449-17463514,17463599-17463688,17463786-17463896	AT1G47550.1  CDS  gene_syn F16N3.18, F16N3_18  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component exocyst|GO:0000145|18492870|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, exocyst; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47560.1); Has 295 Blast hits to 291 proteins in 116 species: Archae - 3; Bacteria - 6; Metazoa - 134; Fungi - 71; Plants - 54; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT1G47550.1p  transcript_id AT1G47550.1  protein_id AT1G47550.1p  transcript_id AT1G47550.1  
At1g47560	chr1:017466751	0.0	W/17466751-17466925,17467337-17467407,17467550-17467630,17467832-17467899,17468024-17468126,17468301-17468449,17468838-17468955,17469067-17469171,17469449-17469550,17469627-17469764,17469946-17470074,17470167-17470238,17470318-17470392,17470572-17470742,17470836-17470992,17471086-17471150,17471247-17471417,17471502-17471581,17471800-17471881,17472143-17472240,17472315-17472423,17472544-17472612,17472744-17472809,17472893-17472982,17473080-17473186,17473348-17473360	AT1G47560.1  CDS  gene_syn F16N3.16, F16N3_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47550.1); Has 302 Blast hits to 296 proteins in 112 species: Archae - 0; Bacteria - 6; Metazoa - 148; Fungi - 70; Plants - 51; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT1G47560.1p  transcript_id AT1G47560.1  protein_id AT1G47560.1p  transcript_id AT1G47560.1  
At1g47565	chr1:017473922	0.0	W/17473922-17476333	AT1G47565.1  mRNA_TE_gene  pseudo  note Transposable element gene, retrotransposon gag protein, contains Pfam:PF03732 Retrotransposon gag protein  
At1g47570	chr1:017478919	0.0	W/17478919-17478991,17479131-17479281,17479627-17479724,17479895-17479956,17480037-17480128,17480221-17480344,17480495-17480581,17480806-17480896,17481591-17481698,17482097-17482197,17482513-17482578,17482647-17482734,17482891-17482951,17483031-17483229	AT1G47570.1  CDS  gene_syn F16N3.15, F16N3_15  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); Has 925 Blast hits to 922 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 678; Fungi - 49; Plants - 48; Viruses - 38; Other Eukaryotes - 112 (source: NCBI BLink).  protein_id AT1G47570.1p  transcript_id AT1G47570.1  protein_id AT1G47570.1p  transcript_id AT1G47570.1  
At1g47570	chr1:017478978	0.0	W/17478978-17479011,17479131-17479281,17479627-17479724,17479895-17479956,17480037-17480128,17480221-17480344,17480495-17480581,17480806-17480896,17481591-17481698,17482097-17482197,17482513-17482578,17482647-17482734,17482891-17482951,17483031-17483229	AT1G47570.2  CDS  gene_syn F16N3.15, F16N3_15  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); Has 925 Blast hits to 922 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 678; Fungi - 49; Plants - 48; Viruses - 38; Other Eukaryotes - 112 (source: NCBI BLink).  protein_id AT1G47570.2p  transcript_id AT1G47570.2  protein_id AT1G47570.2p  transcript_id AT1G47570.2  
At1g47580	chr1:017484753	0.0	W/17484753-17484863,17485014-17485098,17485181-17485449,17485602-17486387	AT1G47580.1  CDS  gene_syn F16N3.14, F16N3_14  go_process protein modification process|GO:0006464||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process protein modification process|GO:0006464||ISS  go_function lipoyltransferase activity|GO:0017118||ISS  product lipoyltransferase, putative  note lipoyltransferase, putative; FUNCTIONS IN: lipoyltransferase activity, catalytic activity; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Biotin/lipoate A/B protein ligase (InterPro:IPR004143); BEST Arabidopsis thaliana protein match is: lipoyltransferase (LIP2p) (TAIR:AT4G31050.1); Has 5169 Blast hits to 5167 proteins in 1071 species: Archae - 13; Bacteria - 1892; Metazoa - 81; Fungi - 82; Plants - 1206; Viruses - 0; Other Eukaryotes - 1895 (source: NCBI BLink).  protein_id AT1G47580.1p  transcript_id AT1G47580.1  protein_id AT1G47580.1p  transcript_id AT1G47580.1  
At1g47590	chr1:017486691	0.0	C/17486691-17487863	AT1G47590.1  pseudogenic_transcript  pseudo  gene_syn ATPUP20, F16N3.13, F16N3_13  gene ATPUP20  function Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.  note pseudogene, purine permease family protein, contains similarity to purine permease (Arabidopsis thaliana) GI:7620007, also similar to Ras-related proteins Rab11C SP|Q40193 from (Lotus japonicus), Rab 11A SP|Q96283 {Arabidopsis thaliana}, Rab2BV SP|Q39434 {Beta vulgaris}; contains Pfam profile PF03151: Domain of unknown function, DUF250; blastp match of 24% identity and 1.9e-12 P-value to GP|21644687|dbj|BAC01243.1||AP004363 putative purine permease {Oryza sativa (japonica cultivar-group)}  
At1g47595	chr1:017489055	0.0	C/17489055-17489450	AT1G47595.1  pseudogenic_transcript  pseudo  note pseudogene, similar to Ras-related protein Rab11C., blastp match of 77% identity and 2.3e-33 P-value to SP|Q40193|R11C_LOTJA Ras-related protein Rab11C. {Lotus japonicus}  
At1g47600	chr1:017491771	0.0	W/17491771-17491962,17492070-17492130,17492254-17492312,17492419-17492494,17492625-17492702,17492791-17492878,17492990-17493233,17493337-17493455,17493597-17493808,17493897-17493928,17494022-17494118,17494215-17494323,17494421-17494589	AT1G47600.1  CDS  gene_syn BETA GLUCOSIDASE 34, BGLU34, F16N3.11, F16N3_11  gene BGLU34  function Encodes a putative myrosinase. Over-expression led to a glucosinolate profile change.  go_component endomembrane system|GO:0012505||IEA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process glucosinolate metabolic process|GO:0019760|19095900|IMP  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function thioglucosidase activity|GO:0019137|15604686|ISS  product BGLU34 (BETA GLUCOSIDASE 34); hydrolase, hydrolyzing O-glycosyl compounds / thioglucosidase  note BETA GLUCOSIDASE 34 (BGLU34); FUNCTIONS IN: thioglucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: glucosinolate metabolic process, response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU35 (BETA GLUCOSIDASE 35); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G51470.1); Has 5711 Blast hits to 5467 proteins in 795 species: Archae - 100; Bacteria - 3107; Metazoa - 602; Fungi - 131; Plants - 842; Viruses - 0; Other Eukaryotes - 929 (source: NCBI BLink).  protein_id AT1G47600.1p  transcript_id AT1G47600.1  protein_id AT1G47600.1p  transcript_id AT1G47600.1  
At1g47603	chr1:017498071	0.0	C/17498071-17498110,17496839-17497980	AT1G47603.1  CDS  gene_syn ARABIDOPSIS THALIANA PURINE PERMEASE 19, ATPUP19  gene ATPUP19  function Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.  go_component membrane|GO:0016020|10662864|TAS  go_process purine transport|GO:0006863|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345|10662864|TAS  product ATPUP19; purine transmembrane transporter  note ATPUP19; FUNCTIONS IN: purine transmembrane transporter activity; INVOLVED IN: purine transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: ATPUP16; purine transmembrane transporter (TAIR:AT1G09860.1); Has 187 Blast hits to 181 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 183; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G47603.1p  transcript_id AT1G47603.1  protein_id AT1G47603.1p  transcript_id AT1G47603.1  
At1g47606	chr1:017503031	0.0	C/17503031-17503732	AT1G47606.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At1g47610	chr1:017504836	0.0	W/17504836-17505891	AT1G47610.1  CDS  gene_syn F16N3.9, F16N3_9  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: heterotrimeric G-protein complex; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT2G26490.1); Has 23113 Blast hits to 12632 proteins in 454 species: Archae - 14; Bacteria - 3101; Metazoa - 10300; Fungi - 4508; Plants - 1984; Viruses - 0; Other Eukaryotes - 3206 (source: NCBI BLink).  protein_id AT1G47610.1p  transcript_id AT1G47610.1  protein_id AT1G47610.1p  transcript_id AT1G47610.1  
At1g47620	chr1:017508116	0.0	C/17508116-17509678	AT1G47620.1  CDS  gene_syn CYP96A8, CYTOCHROME P450, FAMILY 96, SUBFAMILY A, POLYPEPTIDE 8, F16N3.8, F16N3_8  gene CYP96A8  function member of CYP96A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP96A8; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP96A8; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group IV (InterPro:IPR002403), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP96A2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G32170.1); Has 19998 Blast hits to 19955 proteins in 1050 species: Archae - 19; Bacteria - 1383; Metazoa - 9364; Fungi - 3869; Plants - 4576; Viruses - 3; Other Eukaryotes - 784 (source: NCBI BLink).  protein_id AT1G47620.1p  transcript_id AT1G47620.1  protein_id AT1G47620.1p  transcript_id AT1G47620.1  
At1g47625	chr1:017510810	0.0	C/17510810-17511489	AT1G47625.1  pseudogenic_transcript  pseudo  function pseudogene of seven transmembrane domain protein  note expressed protein, this may be a pseudogene. No suitable start codon was identified.  
At1g47630	chr1:017516249	0.0	C/17516249-17517850	AT1G47630.1  pseudogenic_transcript  pseudo  gene_syn CYP96A7, F16N3.43  gene CYP96A7  function member of CYP96A  note pseudogene, cytochrome P450 family, similar to Cytochrome P450 86A2 (SP:O23066) (Arabidopsis thaliana); blastp match of 45% identity and 3.9e-100 P-value to GP|9081784|dbj|BAA99523.1||AP002484 putative cytochrome P450 {Oryza sativa (japonica cultivar-group)}  
At1g47640	chr1:017519922	0.0	C/17519922-17519998,17519621-17519690,17519460-17519519,17519125-17519239,17518742-17518857,17518409-17518657	AT1G47640.1  CDS  gene_syn F16N3.6, F16N3_6  go_component mitochondrion|GO:0005739|15276431|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 147 Blast hits to 147 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G47640.1p  transcript_id AT1G47640.1  protein_id AT1G47640.1p  transcript_id AT1G47640.1  
At1g47650	chr1:017520860	0.0	W/17520860-17524957	AT1G47650.1  mRNA_TE_gene  pseudo  gene_syn F16N3.42  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At1g47655	chr1:017525437	0.0	W/17525437-17526066	AT1G47655.1  CDS  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product Dof-type zinc finger domain-containing protein  note Dof-type zinc finger domain-containing protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT5G60200.1); Has 618 Blast hits to 614 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 613; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G47655.1p  transcript_id AT1G47655.1  protein_id AT1G47655.1p  transcript_id AT1G47655.1  
At1g47660	chr1:017535181	0.0	C/17535181-17535551,17534931-17535079,17533941-17534248	AT1G47660.1  CDS  gene_syn F16N3.35, F16N3_35  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 5051 Blast hits to 2646 proteins in 412 species: Archae - 12; Bacteria - 1127; Metazoa - 732; Fungi - 348; Plants - 734; Viruses - 175; Other Eukaryotes - 1923 (source: NCBI BLink).  protein_id AT1G47660.1p  transcript_id AT1G47660.1  protein_id AT1G47660.1p  transcript_id AT1G47660.1  
At1g47670	chr1:017539110	0.0	C/17539110-17539486,17538281-17538414,17537723-17538150,17537509-17537640,17536834-17537322	AT1G47670.1  CDS  gene_syn F16N3.4, F16N3_4  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product amino acid transporter family protein  note amino acid transporter family protein; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: LHT7 (Lys/His transporter 7); amino acid transmembrane transporter (TAIR:AT4G35180.1); Has 952 Blast hits to 951 proteins in 131 species: Archae - 0; Bacteria - 10; Metazoa - 163; Fungi - 114; Plants - 590; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT1G47670.1p  transcript_id AT1G47670.1  protein_id AT1G47670.1p  transcript_id AT1G47670.1  
At1g47680	chr1:017540775	0.0	W/17540775-17541089	AT1G47680.1  CDS  gene_syn F16N3.39, F16N3_39  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G47680.1p  transcript_id AT1G47680.1  protein_id AT1G47680.1p  transcript_id AT1G47680.1  
At1g47690	chr1:017544079	0.0	W/17544079-17544231	AT1G47690.1  CDS  gene_syn F16N3.34  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47700.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G47690.1p  transcript_id AT1G47690.1  protein_id AT1G47690.1p  transcript_id AT1G47690.1  
At1g47700	chr1:017547325	0.0	W/17547325-17547477	AT1G47700.1  CDS  gene_syn F16N3.41, F16N3_41  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47690.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G47700.1p  transcript_id AT1G47700.1  protein_id AT1G47700.1p  transcript_id AT1G47700.1  
At1g47705	chr1:017549377	0.0	C/17549377-17550724	AT1G47705.1  pseudogenic_transcript  pseudo  gene_syn T2E6.24  note pseudogene, similar to peroxidase 6, similar to peroxidase GB:P00434 GI:464365 from (Brassica rapa); blastp match of 60% identity and 7.0e-14 P-value to GP|5002334|gb|AAD37423.1|AF149281_1|AF149281 peroxidase 6 {Phaseolus vulgaris}  
At1g47710	chr1:017558271	0.0	W/17558271-17558660,17559276-17560061	AT1G47710.1  CDS  gene_syn T2E6.22  go_component apoplast|GO:0048046|17028019|IDA  go_process biological_process|GO:0008150||ND  go_function serine-type endopeptidase inhibitor activity|GO:0004867||ISS  go_function cysteine-type endopeptidase inhibitor activity|GO:0004869|17028019|IDA  product serpin, putative / serine protease inhibitor, putative  note serpin, putative / serine protease inhibitor, putative; FUNCTIONS IN: serine-type endopeptidase inhibitor activity, cysteine-type endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease inhibitor I4, serpin, plant (InterPro:IPR015554), Protease inhibitor I4, serpin (InterPro:IPR000215); BEST Arabidopsis thaliana protein match is: serpin, putative / serine protease inhibitor, putative (TAIR:AT3G45220.1); Has 4823 Blast hits to 4760 proteins in 347 species: Archae - 52; Bacteria - 220; Metazoa - 3736; Fungi - 1; Plants - 230; Viruses - 419; Other Eukaryotes - 165 (source: NCBI BLink).  protein_id AT1G47710.1p  transcript_id AT1G47710.1  protein_id AT1G47710.1p  transcript_id AT1G47710.1  
At1g47720	chr1:017562570	0.0	C/17562570-17562859,17562253-17562397,17562010-17562097,17561514-17561776	AT1G47720.1  CDS  gene_syn OSB1, Organellar Single-stranded, T2E6.21  gene OSB1  function Encodes an organellar single-strand DNA binding protein, located in mitochondria, controls the stoichiometry of alternative mitochondrial DNA forms generated by homologous recombination.  go_component apoplast|GO:0048046|18538804|IDA  go_component mitochondrion|GO:0005739|17189341|IDA  go_process mitochondrial genome maintenance|GO:0000002|17189341|IMP  go_process negative regulation of DNA recombination|GO:0045910|17189341|IMP  go_function single-stranded DNA binding|GO:0003697|17189341|IDA  product OSB1 (Organellar Single-stranded); single-stranded DNA binding  note Organellar Single-stranded (OSB1); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: negative regulation of DNA recombination, mitochondrial genome maintenance; LOCATED IN: mitochondrion, apoplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Primosome PriB/single-strand DNA-binding (InterPro:IPR000424); BEST Arabidopsis thaliana protein match is: PTAC9 (PLASTID TRANSCRIPTIONALLY ACTIVE 9); single-stranded DNA binding (TAIR:AT4G20010.2); Has 107 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 106; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G47720.1p  transcript_id AT1G47720.1  protein_id AT1G47720.1p  transcript_id AT1G47720.1  
At1g47730	chr1:017563931	0.0	C/17563931-17565106	AT1G47730.1  CDS  gene_syn T2E6.20  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G48060.1); Has 997 Blast hits to 968 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 995; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G47730.1p  transcript_id AT1G47730.1  protein_id AT1G47730.1p  transcript_id AT1G47730.1  
At1g47740	chr1:017567903	0.0	W/17567903-17567939,17568037-17568294,17568415-17568702,17568779-17569035	AT1G47740.1  CDS  gene_syn T2E6.19, T2E6_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25170.1); Has 559 Blast hits to 559 proteins in 131 species: Archae - 0; Bacteria - 2; Metazoa - 186; Fungi - 58; Plants - 182; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).  protein_id AT1G47740.1p  transcript_id AT1G47740.1  protein_id AT1G47740.1p  transcript_id AT1G47740.1  
At1g47740	chr1:017567903	0.0	W/17567903-17567939,17568037-17568294,17568415-17568702,17568779-17569035	AT1G47740.2  CDS  gene_syn T2E6.19, T2E6_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25170.1); Has 559 Blast hits to 559 proteins in 131 species: Archae - 0; Bacteria - 2; Metazoa - 186; Fungi - 58; Plants - 182; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).  protein_id AT1G47740.2p  transcript_id AT1G47740.2  protein_id AT1G47740.2p  transcript_id AT1G47740.2  
At1g47750	chr1:017569388	0.0	C/17569388-17570134	AT1G47750.1  CDS  gene_syn PEROXIN 11A, PEX11A, T2E6.18, T2E6_18  gene PEX11A  function member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation.  go_component peroxisomal membrane|GO:0005778||ISS  go_component integral to peroxisomal membrane|GO:0005779|17220199|IDA  go_process peroxisome organization|GO:0007031|17478547|IMP  go_process cell aging|GO:0007569|17220199|IEP  go_process peroxisome fission|GO:0016559|17220199|IMP  go_process peroxisome fission|GO:0016559||ISS  go_function molecular_function|GO:0003674||ND  product PEX11A (PEROXIN 11A)  note PEROXIN 11A (PEX11A); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: peroxisome fission, peroxisome organization, cell aging; LOCATED IN: peroxisomal membrane, integral to peroxisomal membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peroxisomal biogenesis factor 11 (InterPro:IPR008733); BEST Arabidopsis thaliana protein match is: PEX11B (TAIR:AT3G47430.1); Has 178 Blast hits to 178 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 44; Fungi - 13; Plants - 107; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G47750.1p  transcript_id AT1G47750.1  protein_id AT1G47750.1p  transcript_id AT1G47750.1  
At1g47760	chr1:017572451	0.0	W/17572451-17572729,17572884-17573159	AT1G47760.1  CDS  gene_syn AGAMOUS-LIKE 102, AGL102, T2E6.17, T2E6_17  gene AGL102  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product AGL102 (AGAMOUS-LIKE 102); DNA binding / transcription factor  note AGAMOUS-LIKE 102 (AGL102); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL91; transcription factor (TAIR:AT3G66656.1); Has 4099 Blast hits to 4098 proteins in 538 species: Archae - 0; Bacteria - 0; Metazoa - 526; Fungi - 205; Plants - 3320; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT1G47760.1p  transcript_id AT1G47760.1  protein_id AT1G47760.1p  transcript_id AT1G47760.1  
At1g47765	chr1:017575730	0.0	C/17575730-17576092,17574906-17575700	AT1G47765.1  CDS  gene_syn T2E6.16, T2E6_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G47790.1); Has 886 Blast hits to 868 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 886; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G47765.1p  transcript_id AT1G47765.1  protein_id AT1G47765.1p  transcript_id AT1G47765.1  
At1g47770	chr1:017590266	0.0	W/17590266-17590412,17590568-17590716,17590763-17590829,17590917-17591030,17591121-17591261	AT1G47770.1  CDS  gene_syn T2E6.25, T2E6_25  go_component beta-galactosidase complex|GO:0009341||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  product beta-galactosidase  note beta-galactosidase; FUNCTIONS IN: beta-galactosidase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: beta-galactosidase complex; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: M germinated pollen stage, LP.04 four leaves visible, F mature embryo stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944); BEST Arabidopsis thaliana protein match is: beta-galactosidase (TAIR:AT5G35760.1); Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G47770.1p  transcript_id AT1G47770.1  protein_id AT1G47770.1p  transcript_id AT1G47770.1  
At1g47780	chr1:017594683	0.0	W/17594683-17594751,17594830-17594899,17595001-17595105,17595207-17595343	AT1G47780.1  CDS  gene_syn T2E6.14, T2E6_14  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product acyl-protein thioesterase-related  note acyl-protein thioesterase-related; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Phospholipase/carboxylesterase (InterPro:IPR003140); BEST Arabidopsis thaliana protein match is: acyl-protein thioesterase-related (TAIR:AT1G47786.1); Has 549 Blast hits to 549 proteins in 161 species: Archae - 0; Bacteria - 133; Metazoa - 247; Fungi - 27; Plants - 77; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT1G47780.1p  transcript_id AT1G47780.1  protein_id AT1G47780.1p  transcript_id AT1G47780.1  
At1g47783	chr1:017596610	0.0	W/17596610-17597023	AT1G47783.1  mRNA_TE_gene  pseudo  gene_syn T2E6.13, T2E6_13  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05145.1); similar to hypothetical protein 23.t00046 [Brassica oleracea] (GB:ABD65629.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446)  
At1g47786	chr1:017597898	0.0	W/17597898-17598109,17598481-17598517,17598602-17598671,17598758-17598865,17598966-17599099	AT1G47786.1  CDS  gene_syn T2E6.12, T2E6_12  go_component endomembrane system|GO:0012505||IEA  go_function hydrolase activity|GO:0016787||IEA  go_process biological_process|GO:0008150||ND  product acyl-protein thioesterase-related  note acyl-protein thioesterase-related; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Phospholipase/carboxylesterase (InterPro:IPR003140); BEST Arabidopsis thaliana protein match is: acyl-protein thioesterase-related (TAIR:AT1G47780.1); Has 830 Blast hits to 827 proteins in 256 species: Archae - 0; Bacteria - 275; Metazoa - 278; Fungi - 71; Plants - 94; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).  protein_id AT1G47786.1p  transcript_id AT1G47786.1  protein_id AT1G47786.1p  transcript_id AT1G47786.1  
At1g47790	chr1:017600004	0.0	C/17600004-17601173	AT1G47790.1  CDS  gene_syn T2E6.11, T2E6_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G50870.1); Has 1227 Blast hits to 1210 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1225; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G47790.1p  transcript_id AT1G47790.1  protein_id AT1G47790.1p  transcript_id AT1G47790.1  
At1g47800	chr1:017601513	0.0	W/17601513-17602676	AT1G47800.1  CDS  gene_syn T2E6.100, T2E6_100  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G47810.1); Has 566 Blast hits to 487 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 566; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G47800.1p  transcript_id AT1G47800.1  protein_id AT1G47800.1p  transcript_id AT1G47800.1  
At1g47810	chr1:017603504	0.0	W/17603504-17604559	AT1G47810.1  CDS  gene_syn T2E6.10, T2E6_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G47800.1); Has 559 Blast hits to 526 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 559; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G47810.1p  transcript_id AT1G47810.1  protein_id AT1G47810.1p  transcript_id AT1G47810.1  
At1g47813	chr1:017606558	0.0	W/17606558-17606662,17606729-17606818	AT1G47813.1  CDS  gene_syn T2E6.9, T2E6_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47820.2); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G47813.1p  transcript_id AT1G47813.1  protein_id AT1G47813.1p  transcript_id AT1G47813.1  
At1g47816	chr1:017608740	0.0	C/17608740-17611427	AT1G47816.1  mRNA_TE_gene  pseudo  gene_syn T2E6.8, T2E6_8  note Transposable element gene, Mutator-like transposase family, has a 2.5e-26 P-value blast match to Q9SLM0 /314-478 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g47820	chr1:017612114	0.0	W/17612114-17612404	AT1G47820.1  CDS  gene_syn T2E6.7, T2E6_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47813.1); Has 18 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G47820.1p  transcript_id AT1G47820.1  protein_id AT1G47820.1p  transcript_id AT1G47820.1  
At1g47820	chr1:017612114	0.0	W/17612114-17612404	AT1G47820.2  CDS  gene_syn T2E6.7, T2E6_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47813.1); Has 18 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G47820.2p  transcript_id AT1G47820.2  protein_id AT1G47820.2p  transcript_id AT1G47820.2  
At1g47830	chr1:017614782	0.0	C/17614782-17614784,17614595-17614693,17614468-17614518,17614022-17614195,17613494-17613553,17613346-17613387	AT1G47830.1  CDS  gene_syn T2E6.6, T2E6_6  go_component membrane coat|GO:0030117||IEA  go_process transport|GO:0006810||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process protein transport|GO:0015031||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function protein binding|GO:0005515||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component clathrin vesicle coat|GO:0030125||ISS  go_process intracellular protein transport|GO:0006886||ISS  product clathrin coat assembly protein, putative  note clathrin coat assembly protein, putative; FUNCTIONS IN: protein transporter activity, protein binding; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport, protein transport; LOCATED IN: membrane coat, clathrin vesicle coat; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Adaptor protein complex, sigma subunit (InterPro:IPR016635), Clathrin adaptor, sigma subunit/coatomer, zeta subunit (InterPro:IPR000804), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: clathrin adaptor complex small chain family protein (TAIR:AT4G35410.2); Has 1319 Blast hits to 1318 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 639; Fungi - 277; Plants - 140; Viruses - 0; Other Eukaryotes - 263 (source: NCBI BLink).  protein_id AT1G47830.1p  transcript_id AT1G47830.1  protein_id AT1G47830.1p  transcript_id AT1G47830.1  
At1g47840	chr1:017618579	0.0	C/17618579-17618859,17618245-17618395,17617985-17618170,17617820-17617894,17617578-17617730,17617408-17617503,17617185-17617315,17616648-17616729,17616243-17616569	AT1G47840.1  CDS  gene_syn HEXOKINASE 3, HXK3, T2E6.5, T2E6_5  gene HXK3  function Encodes a putative hexokinase.  go_component chloroplast|GO:0009507|18481082|IDA  go_process response to hypoxia|GO:0001666|17234224|IEP  go_process response to osmotic stress|GO:0006970|17234224|IEP  go_process response to cold|GO:0009409|17234224|IEP  go_process response to salt stress|GO:0009651|17234224|IEP  go_process cell division|GO:0051301|17234224|NAS  go_function glucokinase activity|GO:0004340|18481082|IDA  go_function hexokinase activity|GO:0004396|17234224|ISS  go_function hexokinase activity|GO:0004396||ISS  go_function ATP binding|GO:0005524||ISS  go_function fructokinase activity|GO:0008865|18481082|IDA  product HXK3 (HEXOKINASE 3); ATP binding / fructokinase/ glucokinase/ hexokinase  note HEXOKINASE 3 (HXK3); FUNCTIONS IN: hexokinase activity, fructokinase activity, glucokinase activity, ATP binding; INVOLVED IN: response to salt stress, response to cold, response to hypoxia, cell division, response to osmotic stress; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Hexokinase (InterPro:IPR001312); BEST Arabidopsis thaliana protein match is: HXK1 (HEXOKINASE 1); ATP binding / fructokinase/ glucokinase/ hexokinase (TAIR:AT4G29130.1); Has 1776 Blast hits to 1535 proteins in 231 species: Archae - 0; Bacteria - 30; Metazoa - 1028; Fungi - 401; Plants - 201; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT1G47840.1p  transcript_id AT1G47840.1  protein_id AT1G47840.1p  transcript_id AT1G47840.1  
At1g47860	chr1:017620677	0.0	C/17620677-17630270	AT1G47860.1  mRNA_TE_gene  pseudo  gene_syn T2E6.4, T2E6_4  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 9.0e-40 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At1g47870	chr1:017634937	0.0	W/17634937-17635170,17635432-17635618,17635730-17635789,17635874-17635959,17636159-17636247,17636336-17636390,17636559-17636611,17636704-17636754,17636834-17636882,17636963-17637028,17637115-17637185,17637276-17637390,17637483-17637557	AT1G47870.1  CDS  gene_syn ARABIDOPSIS THALIANA HOMOLOG OF E2F C, ATE2F2, ATE2FC, E2FC, E2FC TRANSCRIPTION FACTOR, T2E6.2, T2E6_2, TRANSCRIPTION FACTOR-2 E2F2  gene ATE2F2  function Member of the E2F transcription factors, (cell cycle genes), key components of the cyclin D/retinoblastoma/E2F pathway. AtE2Fc is regulated by a balance between gene expression and ubiquitin-proteasome proteolysis. AtE2Fc might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis. E2Fc has been shown to interact with DPB in its nonphosphorylated form; when E2Fc is phosphorylated, the formation of the E2Fc/DPB heterodimer is lost.  go_component nucleus|GO:0005634|11891240|IDA  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleolus|GO:0005730|15610358|IDA  go_process cell morphogenesis|GO:0000902|12468727|IMP  go_process DNA endoreduplication|GO:0042023|16920782|IMP  go_process cell division|GO:0051301|12468727|IMP  go_process negative regulation of cell division|GO:0051782|16920782|IMP  go_function DNA binding|GO:0003677|11786543|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein heterodimerization activity|GO:0046982|16920782|IPI  product ATE2F2; DNA binding / protein heterodimerization/ transcription factor  note ATE2F2; FUNCTIONS IN: transcription factor activity, protein heterodimerization activity, DNA binding; INVOLVED IN: negative regulation of cell division, cell morphogenesis, DNA endoreduplication, cell division; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Transcription factor E2F/dimerisation partner (TDP) (InterPro:IPR003316), E2F Family (InterPro:IPR015633); BEST Arabidopsis thaliana protein match is: E2F1; DNA binding / protein binding / transcription factor (TAIR:AT5G22220.3); Has 736 Blast hits to 705 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 515; Fungi - 9; Plants - 139; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT1G47870.1p  transcript_id AT1G47870.1  protein_id AT1G47870.1p  transcript_id AT1G47870.1  
At1g47880	chr1:017640046	0.0	W/17640046-17641148	AT1G47880.1  pseudogenic_transcript  pseudo  gene_syn T6B12.7  note pseudogene, similar to NL0E, similar to disease resistance protein GB:BAB02103 GI:9294201 from (Arabidopsis thaliana); blastp match of 52% identity and 3.9e-11 P-value to GP|4235643|gb|AAD13303.1||AF119040 NL0E {Lycopersicon esculentum}  
At1g47885	chr1:017642721	0.0	C/17642721-17642805,17642397-17642635	AT1G47885.1  CDS  gene_syn T6B12.8  go_component cellular_component|GO:0005575||ND  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: AtRLP7 (Receptor Like Protein 7); kinase/ protein binding (TAIR:AT1G47890.1); Has 1164 Blast hits to 984 proteins in 50 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 1148; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G47885.1p  transcript_id AT1G47885.1  protein_id AT1G47885.1p  transcript_id AT1G47885.1  
At1g47890	chr1:017643976	0.0	W/17643976-17647035	AT1G47890.1  CDS  gene_syn AtRLP7, Receptor Like Protein 7, T6B12.2, T6B12_2  gene AtRLP7  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  go_function kinase activity|GO:0016301||ISS  product AtRLP7 (Receptor Like Protein 7); kinase/ protein binding  note Receptor Like Protein 7 (AtRLP7); FUNCTIONS IN: protein binding, kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP6 (Receptor Like Protein 6); protein binding (TAIR:AT1G45616.1); Has 92216 Blast hits to 23648 proteins in 929 species: Archae - 47; Bacteria - 7245; Metazoa - 30981; Fungi - 1303; Plants - 45377; Viruses - 41; Other Eukaryotes - 7222 (source: NCBI BLink).  protein_id AT1G47890.1p  transcript_id AT1G47890.1  protein_id AT1G47890.1p  transcript_id AT1G47890.1  
At1g47900	chr1:017650937	0.0	C/17650937-17651035,17650511-17650856,17648158-17650420,17648017-17648077,17647340-17647735	AT1G47900.1  CDS  gene_syn T6B12.1, T6B12_1  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869, plant (InterPro:IPR008587); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19835.1); Has 62335 Blast hits to 31651 proteins in 1528 species: Archae - 714; Bacteria - 6347; Metazoa - 32831; Fungi - 4749; Plants - 2427; Viruses - 214; Other Eukaryotes - 15053 (source: NCBI BLink).  protein_id AT1G47900.1p  transcript_id AT1G47900.1  protein_id AT1G47900.1p  transcript_id AT1G47900.1  
At1g47910	chr1:017656860	0.0	W/17656860-17660288	AT1G47910.1  mRNA_TE_gene  pseudo  gene_syn T6B12.3, T6B12_3  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 5.3e-42 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At1g47915	chr1:017660752	0.0	W/17660752-17660973	AT1G47915.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G48400.1); Has 743 Blast hits to 728 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 743; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G47915.1p  transcript_id AT1G47915.1  protein_id AT1G47915.1p  transcript_id AT1G47915.1  
At1g47920	chr1:017661095	0.0	W/17661095-17661763,17661852-17661992,17662065-17662394	AT1G47920.1  CDS  gene_syn T6B12.5, T6B12_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product syntaxin-related family protein  note syntaxin-related family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G48400.1); Has 327 Blast hits to 320 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 327; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G47920.1p  transcript_id AT1G47920.1  protein_id AT1G47920.1p  transcript_id AT1G47920.1  
At1g47930	chr1:017662900	0.0	W/17662900-17663940	AT1G47930.1  pseudogenic_transcript  pseudo  gene_syn T6B12.4  note pseudogene, glutamyl-tRNA synthetase, similar to GI:3435196 from (Arabidopsis thaliana); blastp match of 68% identity and 4.0e-65 P-value to GP|6815089|dbj|BAA90375.1||AP001081 unnamed protein product {Oryza sativa (japonica cultivar-group)}  
At1g47940	chr1:017668285	0.0	W/17668285-17668329,17668423-17668752,17668819-17668978,17669091-17669218,17669298-17669401,17669480-17669513,17669672-17669713	AT1G47940.1  CDS  gene_syn T6B12.6, T6B12_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT3G18210.2); Has 34 Blast hits to 34 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G47940.1p  transcript_id AT1G47940.1  protein_id AT1G47940.1p  transcript_id AT1G47940.1  
At1g47946	chr1:017673332	0.0	C/17673332-17673526	AT1G47946.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G47946.1p  transcript_id AT1G47946.1  protein_id AT1G47946.1p  transcript_id AT1G47946.1  
At1g47950	chr1:017675488	0.0	C/17675488-17681953	AT1G47950.1  mRNA_TE_gene  pseudo  gene_syn T2J15.16  note Transposable element gene, copia-like retrotransposon family, has a 1.5e-238 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element)  
At1g47960	chr1:017683319	0.0	C/17683319-17683516,17682443-17682727,17682124-17682185,17681954-17682026	AT1G47960.1  CDS  gene_syn ATC/VIF1, C/VIF1, CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1, T2J15.13, T2J15_13  gene C/VIF1  function Plant cell wall (CWI) and vacuolar invertases (VI) play important roles in carbohydrate metabolism, stress responses and sugar signaling.  go_component cell wall|GO:0005618|15593128|IDA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1); enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor  note CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1 (C/VIF1); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase inhibitor-related (TAIR:AT3G17140.1); Has 82 Blast hits to 82 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G47960.1p  transcript_id AT1G47960.1  protein_id AT1G47960.1p  transcript_id AT1G47960.1  
At1g47970	chr1:017687342	0.0	W/17687342-17687695,17688320-17688562	AT1G47970.1  CDS  gene_syn T2J15.12, T2J15_12  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; Has 85194 Blast hits to 34173 proteins in 1291 species: Archae - 566; Bacteria - 13003; Metazoa - 26927; Fungi - 13823; Plants - 4747; Viruses - 1476; Other Eukaryotes - 24652 (source: NCBI BLink).  protein_id AT1G47970.1p  transcript_id AT1G47970.1  protein_id AT1G47970.1p  transcript_id AT1G47970.1  
At1g47980	chr1:017693484	0.0	C/17693484-17693818,17692779-17693004,17691985-17692371	AT1G47980.1  CDS  gene_syn T2J15.11, T2J15_11  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62730.1); Has 77 Blast hits to 77 proteins in 24 species: Archae - 0; Bacteria - 36; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G47980.1p  transcript_id AT1G47980.1  protein_id AT1G47980.1p  transcript_id AT1G47980.1  
At1g47990	chr1:017698655	0.0	W/17698655-17699001,17699900-17700266,17700583-17700834	AT1G47990.1  CDS  gene_syn ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 4, ATGA2OX4, GA2OX4, GIBBERELLIN 2-OXIDASE 4, T2J15.10, T2J15_10  gene ATGA2OX4  function Encodes a gibberellin 2-oxidase. AtGA2OX4 expression is responsive to cytokinin and KNOX activities.  go_component membrane|GO:0016020|17432890|IDA  go_process gibberellin catabolic process|GO:0045487|16139211|IDA  go_function gibberellin 2-beta-dioxygenase activity|GO:0045543|16139211|IDA  product ATGA2OX4 (ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 4); gibberellin 2-beta-dioxygenase  note ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 4 (ATGA2OX4); FUNCTIONS IN: gibberellin 2-beta-dioxygenase activity; INVOLVED IN: gibberellin catabolic process; LOCATED IN: membrane; EXPRESSED IN: shoot apical meristem, leaf primordium, leaf; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: GA2OX6 (GIBBERELLIN 2-OXIDASE 6); gibberellin 2-beta-dioxygenase (TAIR:AT1G02400.1); Has 5802 Blast hits to 5779 proteins in 678 species: Archae - 0; Bacteria - 725; Metazoa - 118; Fungi - 617; Plants - 3011; Viruses - 0; Other Eukaryotes - 1331 (source: NCBI BLink).  protein_id AT1G47990.1p  transcript_id AT1G47990.1  protein_id AT1G47990.1p  transcript_id AT1G47990.1  
At1g48000	chr1:017706185	0.0	C/17706185-17706377,17705217-17705346,17704269-17704677	AT1G48000.1  CDS  gene_syn AtMYB112, MYB112, T2J15.9, T2J15_9, TRANSCRIPTION FACTOR MYB112, myb domain protein 112  gene MYB112  function Encodes a putative transcription factor (MYB112).  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16258012|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product MYB112 (myb domain protein 112); DNA binding / transcription factor  note myb domain protein 112 (MYB112); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to cadmium ion, response to salt stress, response to abscisic acid stimulus, regulation of transcription, DNA-dependent, response to salicylic acid stimulus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: AtMYB78 (myb domain protein 78); DNA binding / transcription factor (TAIR:AT5G49620.1); Has 6171 Blast hits to 5695 proteins in 348 species: Archae - 0; Bacteria - 0; Metazoa - 652; Fungi - 287; Plants - 3691; Viruses - 6; Other Eukaryotes - 1535 (source: NCBI BLink).  protein_id AT1G48000.1p  transcript_id AT1G48000.1  protein_id AT1G48000.1p  transcript_id AT1G48000.1  
At1g48010	chr1:017712517	0.0	C/17712517-17712660,17711491-17711883	AT1G48010.1  CDS  gene_syn T2J15.8, T2J15_8  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: enzyme inhibitor/ pectinesterase (TAIR:AT1G50325.1); Has 46 Blast hits to 45 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G48010.1p  transcript_id AT1G48010.1  protein_id AT1G48010.1p  transcript_id AT1G48010.1  
At1g48020	chr1:017716234	0.0	C/17716234-17716764	AT1G48020.1  CDS  gene_syn ARABIDOPSIS THALIANA PECTIN METHYLESTERASE INHIBITOR 1, ATPMEI1, F21D18.29, F21D18_29, PECTIN METHYLESTERASE INHIBITOR 1, PMEI1  gene PMEI1  function Pectin methylesterase inhibitor AtPMEI1. Inactivates AtPPME1 in vitro. Localized to pollen tube cell tip.  go_component endomembrane system|GO:0012505||IEA  go_process pollen tube growth|GO:0009860|17971035|IDA  go_function pectinesterase inhibitor activity|GO:0046910|14675772|IDA  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product PMEI1 (PECTIN METHYLESTERASE INHIBITOR 1); pectinesterase inhibitor  note PECTIN METHYLESTERASE INHIBITOR 1 (PMEI1); FUNCTIONS IN: pectinesterase inhibitor activity; INVOLVED IN: pollen tube growth; LOCATED IN: endomembrane system; EXPRESSED IN: pollen tube tip; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: PMEI2; pectinesterase inhibitor (TAIR:AT3G17220.1); Has 130 Blast hits to 129 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 130; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G48020.1p  transcript_id AT1G48020.1  protein_id AT1G48020.1p  transcript_id AT1G48020.1  
At1g48030	chr1:017718869	0.0	C/17718869-17719141,17717432-17718682	AT1G48030.1  CDS  gene_syn T2J15.6, mitochondrial lipoamide dehydrogenase 1, mtLPD1  gene mtLPD1  function Encodes a mitochondrial lipoamide dehydrogenase whose expression is induced by light.  go_component mitochondrion|GO:0005739|17137349|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial matrix|GO:0005759|11598235|ISS  go_process response to light stimulus|GO:0009416|11598235|IEP  go_function dihydrolipoyl dehydrogenase activity|GO:0004148|11598235|ISS  product mtLPD1 (mitochondrial lipoamide dehydrogenase 1); ATP binding / dihydrolipoyl dehydrogenase  note mitochondrial lipoamide dehydrogenase 1 (mtLPD1); FUNCTIONS IN: dihydrolipoyl dehydrogenase activity, ATP binding; INVOLVED IN: response to cadmium ion, response to light stimulus; LOCATED IN: mitochondrion, apoplast, mitochondrial matrix; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, class I, active site (InterPro:IPR012999), Pyridine nucleotide-disulphide oxidoreductase, dimerisation (InterPro:IPR004099), Dihydrolipoamide dehydrogenase (InterPro:IPR006258), FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), Mercuric reductase (InterPro:IPR000815), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: mtLPD2 (LIPOAMIDE DEHYDROGENASE 2); ATP binding / dihydrolipoyl dehydrogenase (TAIR:AT3G17240.3); Has 25440 Blast hits to 25421 proteins in 1924 species: Archae - 589; Bacteria - 15373; Metazoa - 771; Fungi - 349; Plants - 375; Viruses - 0; Other Eukaryotes - 7983 (source: NCBI BLink).  protein_id AT1G48030.1p  transcript_id AT1G48030.1  protein_id AT1G48030.1p  transcript_id AT1G48030.1  
At1g48030	chr1:017718869	0.0	C/17718869-17719141,17717432-17718682	AT1G48030.2  CDS  gene_syn T2J15.6, mitochondrial lipoamide dehydrogenase 1, mtLPD1  gene mtLPD1  function Encodes a mitochondrial lipoamide dehydrogenase whose expression is induced by light.  go_component mitochondrion|GO:0005739|17137349|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial matrix|GO:0005759|11598235|ISS  go_process response to light stimulus|GO:0009416|11598235|IEP  go_function dihydrolipoyl dehydrogenase activity|GO:0004148|11598235|ISS  product mtLPD1 (mitochondrial lipoamide dehydrogenase 1); ATP binding / dihydrolipoyl dehydrogenase  note LIPOAMIDE DEHYDROGENASE 1 (LPD1); FUNCTIONS IN: dihydrolipoyl dehydrogenase activity, ATP binding; INVOLVED IN: response to cadmium ion, response to light stimulus; LOCATED IN: mitochondrion, apoplast, mitochondrial matrix; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, class I, active site (InterPro:IPR012999), Pyridine nucleotide-disulphide oxidoreductase, dimerisation (InterPro:IPR004099), Dihydrolipoamide dehydrogenase (InterPro:IPR006258), FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), Mercuric reductase (InterPro:IPR000815), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: mtLPD2 (LIPOAMIDE DEHYDROGENASE 2); ATP binding / dihydrolipoyl dehydrogenase (TAIR:AT3G17240.3); Has 25440 Blast hits to 25421 proteins in 1924 species: Archae - 589; Bacteria - 15373; Metazoa - 771; Fungi - 349; Plants - 375; Viruses - 0; Other Eukaryotes - 7983 (source: NCBI BLink).  protein_id AT1G48030.2p  transcript_id AT1G48030.2  protein_id AT1G48030.2p  transcript_id AT1G48030.2  
At1g48040	chr1:017721528	0.0	C/17721528-17721698,17720064-17721044	AT1G48040.1  CDS  gene_syn T2J15.5  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product catalytic/ protein serine/threonine phosphatase  note catalytic/ protein serine/threonine phosphatase; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C, N-terminal (InterPro:IPR014045), Protein phosphatase 2C (InterPro:IPR015655); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C-related / PP2C-related (TAIR:AT3G17250.1); Has 4299 Blast hits to 4267 proteins in 263 species: Archae - 3; Bacteria - 65; Metazoa - 1416; Fungi - 503; Plants - 1326; Viruses - 9; Other Eukaryotes - 977 (source: NCBI BLink).  protein_id AT1G48040.1p  transcript_id AT1G48040.1  protein_id AT1G48040.1p  transcript_id AT1G48040.1  
At1g48050	chr1:017723498	0.0	W/17723498-17723512,17723888-17723980,17724059-17724110,17724249-17724380,17724455-17724858,17725016-17725302,17725401-17725596,17725677-17725883,17725962-17726129,17726212-17726505,17726587-17726717,17726796-17726859	AT1G48050.1  CDS  gene_syn ARABIDOPSIS THALIANA KU80 HOMOLOG, ATKU80, KU80, KU80-LIKE PROTEIN, T2J15.4  gene KU80  function Ku80 and ku70 form the heterodimer complex Ku, required for proper maintenance of the telomeric C strand. Ku regulates the extension of the telomeric G strand. Interacts with WEX, and this interaction stimulates the WEX exonuclease activity. Binds double stranded DNA breaks as a heterodimer with Ku70, involved in non-homologous end joining repair. Mutants are defective in T-DNA integration. Over expression confers increased resistance to DNA damage agents and increased susceptibility to T-DNA transformation.  go_component nucleus|GO:0005634||IEA  go_process telomere maintenance|GO:0000723|16396834|TAS  go_process DNA repair|GO:0006281|16396834|TAS  go_process double-strand break repair|GO:0006302|19070688|IMP  go_process double-strand break repair via nonhomologous end joining|GO:0006303|12182708|TAS  go_process response to heat|GO:0009408|18515112|IEP  go_process DNA integration|GO:0015074|16380432|TAS  go_function double-stranded DNA binding|GO:0003690|16396834|IDA  go_function protein binding|GO:0005515|12148535|IPI  go_function protein binding|GO:0005515|16396834|IPI  product KU80; double-stranded DNA binding / protein binding  note KU80; FUNCTIONS IN: protein binding, double-stranded DNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ku70/Ku80, N-terminal alpha/beta (InterPro:IPR005161), DNA helicase, ATP-dependent, Ku type (InterPro:IPR006164), Spen Paralogue and Orthologue C-terminal-like (InterPro:IPR016194), Ku70/Ku80 C-terminal arm (InterPro:IPR005160), Ku, C-terminal (InterPro:IPR014893); Has 583 Blast hits to 557 proteins in 144 species: Archae - 0; Bacteria - 11; Metazoa - 221; Fungi - 255; Plants - 33; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT1G48050.1p  transcript_id AT1G48050.1  protein_id AT1G48050.1p  transcript_id AT1G48050.1  
At1g48060	chr1:017728295	0.0	W/17728295-17728988,17729081-17729448	AT1G48060.1  CDS  gene_syn T2J15.3  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G47730.1); Has 642 Blast hits to 625 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 642; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G48060.1p  transcript_id AT1G48060.1  protein_id AT1G48060.1p  transcript_id AT1G48060.1  
At1g48070	chr1:017731067	0.0	C/17731067-17731103,17730568-17730965	AT1G48070.1  CDS  gene_syn T2J15.15  go_process cell redox homeostasis|GO:0045454||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like fold (InterPro:IPR012336); Has 13 Blast hits to 13 proteins in 5 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G48070.1p  transcript_id AT1G48070.1  protein_id AT1G48070.1p  transcript_id AT1G48070.1  
At1g48070	chr1:017731067	0.0	C/17731067-17731103,17730816-17730965,17730568-17730725	AT1G48070.2  CDS  gene_syn T2J15.15  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G48070.2p  transcript_id AT1G48070.2  protein_id AT1G48070.2p  transcript_id AT1G48070.2  
At1g48080	chr1:017731841	0.0	W/17731841-17731913	AT1G48080.1  tRNA  gene_syn 52163.TRNA-LYS-1, 60102.TRNA-LYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Lys (anticodon: CTT)  transcript_id AT1G48080.1  
At1g48090	chr1:017757950	0.0	C/17757950-17757970,17757659-17757740,17757379-17757482,17756590-17756685,17756446-17756493,17756262-17756312,17755939-17756042,17755660-17755777,17755387-17755452,17754932-17755033,17754619-17754816,17754252-17754409,17753896-17754054,17753194-17753286,17752700-17753054,17752464-17752577,17751671-17751766,17751411-17751478,17751068-17751188,17750771-17750992,17750456-17750683,17750257-17750366,17750027-17750123,17749621-17749716,17749390-17749530,17749158-17749226,17748166-17748648,17747757-17748077,17747400-17747531,17747175-17747288,17746870-17747054,17746453-17746561,17746210-17746353,17745567-17745842,17744800-17745471,17744362-17744568,17743945-17744048,17743346-17743641,17743088-17743172,17742438-17742689,17741988-17742356,17741567-17741885,17741228-17741386,17740979-17741142,17740704-17740884,17740359-17740628,17740062-17740268,17739751-17739805,17739390-17739520,17738356-17739294,17738206-17738282,17737480-17737918,17737190-17737276,17736657-17736812,17736391-17736579	AT1G48090.2  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_process signal transduction|GO:0007165|15358268|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product phosphoinositide binding  note phosphoinositide binding; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17140.1); Has 1242 Blast hits to 830 proteins in 152 species: Archae - 0; Bacteria - 10; Metazoa - 658; Fungi - 157; Plants - 195; Viruses - 0; Other Eukaryotes - 222 (source: NCBI BLink).  protein_id AT1G48090.2p  transcript_id AT1G48090.2  protein_id AT1G48090.2p  transcript_id AT1G48090.2  
At1g48090	chr1:017757950	0.0	C/17757950-17757970,17757659-17757740,17757379-17757482,17756590-17756685,17756446-17756493,17756262-17756312,17755939-17756042,17755660-17755777,17755387-17755452,17754932-17755033,17754619-17754816,17754252-17754409,17753896-17754054,17753194-17753286,17752700-17753054,17752464-17752577,17751671-17751766,17751411-17751478,17751068-17751188,17750771-17750992,17750456-17750683,17750257-17750366,17750027-17750123,17749621-17749716,17749390-17749530,17749158-17749226,17748166-17748648,17747757-17748077,17747400-17747531,17747175-17747288,17746870-17747054,17746453-17746561,17746210-17746353,17745567-17745842,17744800-17745471,17744362-17744568,17743945-17744048,17743346-17743641,17743088-17743172,17742438-17742689,17741988-17742356,17741567-17741885,17741228-17741386,17740979-17741142,17740704-17740884,17740359-17740628,17740062-17740268,17739751-17739805,17739390-17739520,17738356-17739294,17738206-17738282,17737480-17737918,17737190-17737276,17736657-17736812,17736395-17736579,17735527-17736066,17735052-17735229,17734823-17734965,17734600-17734726,17734189-17734410,17733605-17733961,17733266-17733424,17732869-17733156,17732582-17732722	AT1G48090.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_process signal transduction|GO:0007165|15358268|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product phosphoinositide binding  note phosphoinositide binding; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17140.1); Has 1972 Blast hits to 1096 proteins in 156 species: Archae - 2; Bacteria - 10; Metazoa - 987; Fungi - 338; Plants - 230; Viruses - 0; Other Eukaryotes - 405 (source: NCBI BLink).  protein_id AT1G48090.1p  transcript_id AT1G48090.1  protein_id AT1G48090.1p  transcript_id AT1G48090.1  
At1g48095	chr1:017760142	0.0	W/17760142-17760199,17760285-17760894,17761376-17761451,17761831-17761998	AT1G48095.1  CDS  gene_syn F21D18.19, F21D18_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G36960.1); Has 75 Blast hits to 75 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G48095.1p  transcript_id AT1G48095.1  protein_id AT1G48095.1p  transcript_id AT1G48095.1  
At1g48100	chr1:017766921	0.0	W/17766921-17767340,17767529-17767696,17767891-17767935,17768028-17768235,17768343-17768424,17769121-17769625	AT1G48100.1  CDS  gene_syn F21D18.18, F21D18_18  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT1G02460.1); Has 2737 Blast hits to 2720 proteins in 388 species: Archae - 4; Bacteria - 534; Metazoa - 25; Fungi - 1160; Plants - 917; Viruses - 5; Other Eukaryotes - 92 (source: NCBI BLink).  protein_id AT1G48100.1p  transcript_id AT1G48100.1  protein_id AT1G48100.1p  transcript_id AT1G48100.1  
At1g48110	chr1:017772719	0.0	C/17772719-17772806,17772565-17772638,17772010-17772468,17771278-17771790,17770987-17771199,17770339-17770911	AT1G48110.1  CDS  gene_syn ECT7, F21D18.17, F21D18_17, evolutionarily conserved C-terminal region 7  gene ECT7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ECT7 (evolutionarily conserved C-terminal region 7)  note evolutionarily conserved C-terminal region 7 (ECT7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: YT521-B-like protein (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: ECT6 (evolutionarily conserved C-terminal region 6) (TAIR:AT3G17330.1); Has 738 Blast hits to 734 proteins in 130 species: Archae - 0; Bacteria - 3; Metazoa - 358; Fungi - 90; Plants - 194; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT1G48110.1p  transcript_id AT1G48110.1  protein_id AT1G48110.1p  transcript_id AT1G48110.1  
At1g48110	chr1:017772719	0.0	C/17772719-17772806,17772565-17772638,17772010-17772468,17771278-17771790,17770987-17771199,17770339-17770911	AT1G48110.2  CDS  gene_syn ECT7, F21D18.17, F21D18_17, evolutionarily conserved C-terminal region 7  gene ECT7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ECT7 (evolutionarily conserved C-terminal region 7)  note evolutionarily conserved C-terminal region 7 (ECT7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: YT521-B-like protein (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: ECT6 (evolutionarily conserved C-terminal region 6) (TAIR:AT3G17330.1); Has 738 Blast hits to 734 proteins in 130 species: Archae - 0; Bacteria - 3; Metazoa - 358; Fungi - 90; Plants - 194; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT1G48110.2p  transcript_id AT1G48110.2  protein_id AT1G48110.2p  transcript_id AT1G48110.2  
At1g48120	chr1:017779517	0.0	C/17779517-17779624,17778669-17779426,17778494-17778575,17777661-17778095,17777430-17777580,17776728-17777311,17776056-17776583,17775724-17775858,17775444-17775551,17774238-17775365	AT1G48120.1  CDS  gene_syn F21D18.16, F21D18_16  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product calcineurin-like phosphoesterase family protein  note calcineurin-like phosphoesterase family protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: PP7 (SERINE/THREONINE PHOSPHATASE 7); protein serine/threonine phosphatase (TAIR:AT5G63870.2); Has 5901 Blast hits to 5640 proteins in 318 species: Archae - 53; Bacteria - 177; Metazoa - 2115; Fungi - 897; Plants - 1178; Viruses - 2; Other Eukaryotes - 1479 (source: NCBI BLink).  protein_id AT1G48120.1p  transcript_id AT1G48120.1  protein_id AT1G48120.1p  transcript_id AT1G48120.1  
At1g48130	chr1:017780610	0.0	W/17780610-17780727,17780816-17780964,17781054-17781182,17781246-17781500	AT1G48130.1  CDS  gene_syn 1-CYS PEROXIREDOXIN, ARABIDOPSIS THALIANA 1-CYSTEINE PEROXIREDOXIN 1, ATPER1, F21D18.15, F21D18_15  gene ATPER1  function encodes a protein similar to the 1-cysteine (1-Cys) peroxiredoxin family of antioxidants. Expression is limited to seed (aleurone and embryo) and is not induced by ABA or drought.  go_component cellular_component|GO:0005575||ND  go_process response to desiccation|GO:0009269|9580097|TAS  go_process maintenance of seed dormancy|GO:0010231|9580097|TAS  go_function thioredoxin peroxidase activity|GO:0008379|9580097|ISS  go_function antioxidant activity|GO:0016209||ISS  product ATPER1; antioxidant/ thioredoxin peroxidase  note ATPER1; FUNCTIONS IN: thioredoxin peroxidase activity, antioxidant activity; INVOLVED IN: maintenance of seed dormancy, response to desiccation; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, aleurone layer, seed; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: 2-Cys Prx B (2-Cysteine peroxiredoxin B); antioxidant/ peroxiredoxin (TAIR:AT5G06290.1); Has 7985 Blast hits to 7984 proteins in 1463 species: Archae - 320; Bacteria - 4155; Metazoa - 977; Fungi - 210; Plants - 261; Viruses - 0; Other Eukaryotes - 2062 (source: NCBI BLink).  protein_id AT1G48130.1p  transcript_id AT1G48130.1  protein_id AT1G48130.1p  transcript_id AT1G48130.1  
At1g48140	chr1:017783402	0.0	W/17783402-17783503,17783601-17783708,17783855-17783914	AT1G48140.1  CDS  gene_syn F21D18.14, F21D18_14  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product dolichol-phosphate mannosyltransferase-related  note dolichol-phosphate mannosyltransferase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dolichol-phosphate mannosyltransferase subunit 3 (InterPro:IPR013174); Has 48 Blast hits to 47 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 22; Fungi - 8; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G48140.1p  transcript_id AT1G48140.1  protein_id AT1G48140.1p  transcript_id AT1G48140.1  
At1g48145	chr1:017784866	0.0	C/17784866-17784913,17784507-17784812	AT1G48145.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G50790.1); Has 16 Blast hits to 12 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G48145.1p  transcript_id AT1G48145.1  protein_id AT1G48145.1p  transcript_id AT1G48145.1  
At1g48150	chr1:017785397	0.0	W/17785397-17786368	AT1G48150.1  CDS  gene_syn F21D18.12, F21D18_12  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product MADS-box protein (AGL74 )  note MADS-box protein (AGL74 ); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: electron carrier/ iron-sulfur cluster binding (TAIR:AT1G50780.1); Has 282 Blast hits to 282 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 20; Plants - 234; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G48150.1p  transcript_id AT1G48150.1  protein_id AT1G48150.1p  transcript_id AT1G48150.1  
At1g48160	chr1:017788110	0.0	C/17788110-17788286,17787922-17788021,17786779-17786939	AT1G48160.1  CDS  gene_syn F21D18.11, F21D18_11  go_component signal recognition particle|GO:0048500||IEA  go_process SRP-dependent cotranslational protein targeting to membrane|GO:0006614||IEA  go_function 7S RNA binding|GO:0008312||IEA  go_component signal recognition particle, endoplasmic reticulum targeting|GO:0005786||ISS  go_process protein targeting|GO:0006605||ISS  go_function 7S RNA binding|GO:0008312||ISS  product signal recognition particle 19 kDa protein, putative / SRP19, putative  note signal recognition particle 19 kDa protein, putative / SRP19, putative; FUNCTIONS IN: 7S RNA binding; INVOLVED IN: protein targeting, SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: signal recognition particle, signal recognition particle, endoplasmic reticulum targeting; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Signal recognition particle, SRP19 subunit (InterPro:IPR002778); Has 355 Blast hits to 354 proteins in 166 species: Archae - 52; Bacteria - 0; Metazoa - 133; Fungi - 97; Plants - 29; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT1G48160.1p  transcript_id AT1G48160.1  protein_id AT1G48160.1p  transcript_id AT1G48160.1  
At1g48170	chr1:017788810	0.0	W/17788810-17788983,17789077-17789145,17789235-17789310,17789392-17789456,17789558-17789635	AT1G48170.1  CDS  gene_syn F21D18.10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 49 Blast hits to 49 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 22; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G48170.1p  transcript_id AT1G48170.1  protein_id AT1G48170.1p  transcript_id AT1G48170.1  
At1g48175	chr1:017790957	0.0	W/17790957-17791013,17791089-17791126,17791237-17791303,17791511-17791670,17791756-17791938,17792023-17792066	AT1G48175.1  CDS  gene_syn emb2191, embryo defective 2191  gene emb2191  go_function catalytic activity|GO:0003824||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product emb2191 (embryo defective 2191); catalytic/ hydrolase/ zinc ion binding  note embryo defective 2191 (emb2191); FUNCTIONS IN: hydrolase activity, zinc ion binding, catalytic activity; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193); BEST Arabidopsis thaliana protein match is: TADA (TRNA ARGININE ADENOSINE DEAMINASE); catalytic/ hydrolase/ zinc ion binding (TAIR:AT1G68720.1); Has 4805 Blast hits to 4803 proteins in 1302 species: Archae - 36; Bacteria - 2760; Metazoa - 112; Fungi - 153; Plants - 79; Viruses - 0; Other Eukaryotes - 1665 (source: NCBI BLink).  protein_id AT1G48175.1p  transcript_id AT1G48175.1  protein_id AT1G48175.1p  transcript_id AT1G48175.1  
At1g48180	chr1:017793642	0.0	C/17793642-17793717,17792848-17793242,17792525-17792773	AT1G48180.1  CDS  gene_syn F21D18.8, F21D18_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: seed; EXPRESSED DURING: E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51670.1); Has 20 Blast hits to 20 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G48180.1p  transcript_id AT1G48180.1  protein_id AT1G48180.1p  transcript_id AT1G48180.1  
At1g48190	chr1:017795094	0.0	C/17795094-17795163,17794896-17795057,17794732-17794821,17794560-17794621	AT1G48190.1  CDS  gene_syn F21D18.31, F21D18_31  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G39590.1); Has 89 Blast hits to 89 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G48190.1p  transcript_id AT1G48190.1  protein_id AT1G48190.1p  transcript_id AT1G48190.1  
At1g48195	chr1:017796349	0.0	W/17796349-17796597	AT1G48195.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc finger (CCCH-type) family protein  note zinc finger (CCCH-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein (TAIR:AT3G48440.1); Has 570 Blast hits to 178 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 6; Plants - 559; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G48195.1p  transcript_id AT1G48195.1  protein_id AT1G48195.1p  transcript_id AT1G48195.1  
At1g48200	chr1:017797549	0.0	C/17797549-17797852,17797070-17797122	AT1G48200.1  CDS  gene_syn F21D18.7, F21D18_7  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 15 Blast hits to 15 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G48200.1p  transcript_id AT1G48200.1  protein_id AT1G48200.1p  transcript_id AT1G48200.1  
At1g48210	chr1:017799551	0.0	W/17799551-17799632,17799731-17799981,17800149-17800275,17800394-17800667,17800908-17801040,17801361-17801447,17801661-17801798	AT1G48210.1  CDS  gene_syn F21D18.32  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product serine/threonine protein kinase, putative  note serine/threonine protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase, putative (TAIR:AT3G17410.1); Has 76984 Blast hits to 76132 proteins in 3095 species: Archae - 50; Bacteria - 7139; Metazoa - 33626; Fungi - 5490; Plants - 17872; Viruses - 311; Other Eukaryotes - 12496 (source: NCBI BLink).  protein_id AT1G48210.1p  transcript_id AT1G48210.1  protein_id AT1G48210.1p  transcript_id AT1G48210.1  
At1g48210	chr1:017799551	0.0	W/17799551-17799632,17799731-17799981,17800149-17800275,17800394-17800667,17800908-17801040,17801361-17801447,17801661-17801798	AT1G48210.2  CDS  gene_syn F21D18.32  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product serine/threonine protein kinase, putative  note serine/threonine protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase, putative (TAIR:AT3G17410.1); Has 76984 Blast hits to 76132 proteins in 3095 species: Archae - 50; Bacteria - 7139; Metazoa - 33626; Fungi - 5490; Plants - 17872; Viruses - 311; Other Eukaryotes - 12496 (source: NCBI BLink).  protein_id AT1G48210.2p  transcript_id AT1G48210.2  protein_id AT1G48210.2p  transcript_id AT1G48210.2  
At1g48220	chr1:017802863	0.0	W/17802863-17802944,17803045-17803295,17803441-17803567,17803676-17803952,17804062-17804194,17804461-17804547,17804745-17804882	AT1G48220.1  CDS  gene_syn F11A17.22, F11A17_22  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function protein kinase activity|GO:0004672||ISS  product ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase, putative (TAIR:AT1G48210.2); Has 64252 Blast hits to 63621 proteins in 2947 species: Archae - 45; Bacteria - 5624; Metazoa - 29037; Fungi - 3929; Plants - 16041; Viruses - 246; Other Eukaryotes - 9330 (source: NCBI BLink).  protein_id AT1G48220.1p  transcript_id AT1G48220.1  protein_id AT1G48220.1p  transcript_id AT1G48220.1  
At1g48230	chr1:017806264	0.0	W/17806264-17806356,17806594-17806701,17806831-17806862,17806956-17807006,17807165-17807226,17807328-17807589,17807826-17808091,17808184-17808278,17808470-17808604	AT1G48230.1  CDS  gene_syn F21D18.5  go_component endomembrane system|GO:0012505||IEA  go_function organic anion transmembrane transporter activity|GO:0008514||ISS  product phosphate translocator-related  note phosphate translocator-related; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: phosphate translocator-related (TAIR:AT3G17430.1); Has 1505 Blast hits to 1504 proteins in 182 species: Archae - 0; Bacteria - 9; Metazoa - 391; Fungi - 253; Plants - 687; Viruses - 0; Other Eukaryotes - 165 (source: NCBI BLink).  protein_id AT1G48230.1p  transcript_id AT1G48230.1  protein_id AT1G48230.1p  transcript_id AT1G48230.1  
At1g48240	chr1:017811580	0.0	C/17811580-17811656,17811286-17811378,17810966-17811059,17810618-17810655,17810369-17810469,17809895-17809974,17809762-17809818,17809590-17809682,17809406-17809480,17809223-17809312	AT1G48240.1  CDS  gene_syn ATNPSN12, F21D18.4, NOVEL PLANT SNARE 12, NPSN12  gene NPSN12  function member of NPSN Gene Family  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process intracellular protein transport|GO:0006886||IEA  go_component membrane|GO:0016020||ISS  go_function protein transporter activity|GO:0008565||ISS  product ATNPSN12; protein transporter  note ATNPSN12; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vesicle transport v-SNARE (InterPro:IPR007705), Target SNARE coiled-coil region (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: NPSN13 (NOVEL PLANT SNARE 13) (TAIR:AT3G17440.1); Has 324 Blast hits to 324 proteins in 90 species: Archae - 2; Bacteria - 16; Metazoa - 86; Fungi - 14; Plants - 85; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).  protein_id AT1G48240.1p  transcript_id AT1G48240.1  protein_id AT1G48240.1p  transcript_id AT1G48240.1  
At1g48250	chr1:017812459	0.0	C/17812459-17813523	AT1G48250.1  mRNA_TE_gene  pseudo  gene_syn F21D18.3  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G35400.1); similar to retinitis pigmentosa GTPase regulator-like protein [Takifugu rubripes] (GB:AAG00554.1)  
At1g48260	chr1:017817062	0.0	C/17817062-17817226,17816910-17816972,17815952-17816023,17815740-17815847,17815563-17815643,17815304-17815483,17815036-17815227,17814824-17814943,17814615-17814731,17814371-17814508,17814226-17814288	AT1G48260.1  CDS  gene_syn CBL-INTERACTING PROTEIN KINASE 17, CIPK17, F21D18.2, SNF1-RELATED PROTEIN KINASE 3.21, SnRK3.21  gene CIPK17  function Encodes a member of the SNF1-related kinase (SnRK) gene family (SnRK3.21), which has also been reported as a member of the CBL-interacting protein kinases (CIPK17).  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product CIPK17 (CBL-INTERACTING PROTEIN KINASE 17); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note CBL-INTERACTING PROTEIN KINASE 17 (CIPK17); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: signal transduction, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CIPK1 (CBL-INTERACTING PROTEIN KINASE 1); kinase/ protein binding (TAIR:AT3G17510.1); Has 92355 Blast hits to 90908 proteins in 2389 species: Archae - 60; Bacteria - 8450; Metazoa - 39617; Fungi - 8296; Plants - 17890; Viruses - 471; Other Eukaryotes - 17571 (source: NCBI BLink).  protein_id AT1G48260.1p  transcript_id AT1G48260.1  protein_id AT1G48260.1p  transcript_id AT1G48260.1  
At1g48267	chr1:017825730	0.0	W/17825730-17825819	AT1G48267.1  miRNA  gene_syn MICRORNA 161, MIR161  gene MIR161  function Encodes a microRNA that targets several PPR family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCAAUGCAUUGAAAGUGACUA  go_component cellular_component|GO:0005575||ND  go_process gene silencing by miRNA|GO:0035195|15200956|TAS  go_function molecular_function|GO:0003674||ND  product MIR161 (MICRORNA 161); miRNA  transcript_id AT1G48267.1  
At1g48268	chr1:017826622	0.0	C/17826622-17827824	AT1G48268.1  pseudogenic_transcript  pseudo  function pseudogene of F-box family protein  
At1g48270	chr1:017830032	0.0	C/17830032-17830214,17829806-17829837,17829552-17829721,17829328-17829422,17829078-17829179,17828919-17828975,17828689-17828832,17828527-17828597,17828314-17828440	AT1G48270.1  CDS  gene_syn F11A17.17, F11A17_17, G-PROTEIN-COUPLED RECEPTOR 1, GCR1  gene GCR1  function encodes a protein similar to G-coupled receptor with 7 transmembrane regions. Overexpression studies suggest this gene is involved in dormancy and flowering. Reduction of expression results in decreased sensitivity to cytokinin.  go_component plasma membrane|GO:0005886|17151019|IDA  go_process mitotic cell cycle|GO:0000278|11930019|IDA  go_process tyrosine biosynthetic process|GO:0006571|16415218|IMP  go_process L-phenylalanine biosynthetic process|GO:0009094|16415218|IMP  go_process response to cytokinin stimulus|GO:0009735|9512416|IMP  go_process flower development|GO:0009908|11930019|IMP  go_process maintenance of seed dormancy|GO:0010231|11930019|IMP  go_process response to low fluence blue light stimulus by blue low-fluence system|GO:0010244|16415218|IMP  go_function G-protein coupled receptor activity|GO:0004930|9512416|ISS  product GCR1 (G-PROTEIN-COUPLED RECEPTOR 1); G-protein coupled receptor  note G-PROTEIN-COUPLED RECEPTOR 1 (GCR1); FUNCTIONS IN: G-protein coupled receptor activity; INVOLVED IN: in 7 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GPCR, family 2-like (InterPro:IPR017981), cAMP-type GPCR (InterPro:IPR000848); Has 509 Blast hits to 507 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 309; Fungi - 63; Plants - 25; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).  protein_id AT1G48270.1p  transcript_id AT1G48270.1  protein_id AT1G48270.1p  transcript_id AT1G48270.1  
At1g48280	chr1:017835196	0.0	W/17835196-17835741,17835872-17836321,17836418-17836549,17836743-17836924,17837002-17837113,17837213-17837356,17837443-17837553	AT1G48280.1  CDS  gene_syn F11A17.16, F11A17_16  go_process biological_process|GO:0008150||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1) (TAIR:AT3G25690.1); Has 10269 Blast hits to 7102 proteins in 504 species: Archae - 16; Bacteria - 832; Metazoa - 3930; Fungi - 1207; Plants - 2111; Viruses - 564; Other Eukaryotes - 1609 (source: NCBI BLink).  protein_id AT1G48280.1p  transcript_id AT1G48280.1  protein_id AT1G48280.1p  transcript_id AT1G48280.1  
At1g48290	chr1:017842668	0.0	W/17842668-17844907	AT1G48290.1  mRNA_TE_gene  pseudo  gene_syn F11A17.26, F11A17_26  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G43660.1); similar to transposon protein, putative, Mutator sub-class [Oryza sativa (japonica cultivar-group)] (GB:AAP54042.1)  
At1g48300	chr1:017847391	0.0	W/17847391-17847534,17847625-17848338	AT1G48300.1  CDS  gene_syn F11A17.15, F11A17_15  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 68 Blast hits to 62 proteins in 29 species: Archae - 0; Bacteria - 2; Metazoa - 12; Fungi - 2; Plants - 37; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G48300.1p  transcript_id AT1G48300.1  protein_id AT1G48300.1p  transcript_id AT1G48300.1  
At1g48310	chr1:017853612	0.0	C/17853612-17853731,17853411-17853474,17853206-17853297,17853077-17853132,17852854-17852929,17852682-17852748,17852485-17852551,17852304-17852370,17851983-17852066,17851863-17851904,17851617-17851772,17851287-17851364,17851033-17851101,17850846-17850911,17850623-17850751,17850460-17850516,17850278-17850367,17850049-17850114,17849891-17849959,17849708-17849812,17849338-17849463,17849162-17849220,17849018-17849054,17848620-17848799	AT1G48310.1  CDS  gene_syn CHA18, CHR18, F11A17.14, F11A17_14  gene CHR18  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  go_function helicase activity|GO:0004386||ISS  go_function ATP binding|GO:0005524||ISS  product CHR18; ATP binding / DNA binding / helicase/ nucleic acid binding  note CHR18; FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein (TAIR:AT5G07810.1); Has 11370 Blast hits to 9834 proteins in 966 species: Archae - 72; Bacteria - 2360; Metazoa - 2944; Fungi - 2505; Plants - 648; Viruses - 126; Other Eukaryotes - 2715 (source: NCBI BLink).  protein_id AT1G48310.1p  transcript_id AT1G48310.1  protein_id AT1G48310.1p  transcript_id AT1G48310.1  
At1g48315	chr1:017854117	0.0	W/17854117-17855811	AT1G48315.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G48320  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G48315.1  
At1g48320	chr1:017855452	0.0	C/17855452-17855577,17855024-17855368	AT1G48320.1  CDS  gene_syn F11A17.13, F11A17_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function acyl-CoA thioesterase activity|GO:0016291||ISS  go_function hydrolase activity, acting on ester bonds|GO:0016788||ISS  product thioesterase family protein  note thioesterase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioesterase superfamily (InterPro:IPR006683), Phenylacetic acid degradation-related protein (InterPro:IPR003736); BEST Arabidopsis thaliana protein match is: thioesterase family protein (TAIR:AT5G48950.1); Has 1639 Blast hits to 1639 proteins in 507 species: Archae - 0; Bacteria - 1172; Metazoa - 3; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 375 (source: NCBI BLink).  protein_id AT1G48320.1p  transcript_id AT1G48320.1  protein_id AT1G48320.1p  transcript_id AT1G48320.1  
At1g48325	chr1:017857326	0.0	W/17857326-17857574	AT1G48325.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Expressed protein  note Expressed protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 15 Blast hits to 14 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G48325.1p  transcript_id AT1G48325.1  protein_id AT1G48325.1p  transcript_id AT1G48325.1  
At1g48330	chr1:017863897	0.0	W/17863897-17864124	AT1G48330.1  CDS  gene_syn F11A17.11, F11A17_11  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17580.1); Has 25 Blast hits to 25 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G48330.1p  transcript_id AT1G48330.1  protein_id AT1G48330.1p  transcript_id AT1G48330.1  
At1g48340	chr1:017865828	0.0	W/17865828-17866707	AT1G48340.1  pseudogenic_transcript  pseudo  gene_syn F11A17.23  note pseudogene, hypothetical protein  
At1g48350	chr1:017867269	0.0	W/17867269-17867469,17867810-17867971,17868066-17868215	AT1G48350.1  CDS  gene_syn F11A17.10, F11A17_10  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L18 family protein  note ribosomal protein L18 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18/L5 (InterPro:IPR005484), Ribosomal protein L18, bacterial (InterPro:IPR004389); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17626.1); Has 4949 Blast hits to 4949 proteins in 1392 species: Archae - 0; Bacteria - 2900; Metazoa - 1; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 1983 (source: NCBI BLink).  protein_id AT1G48350.1p  transcript_id AT1G48350.1  protein_id AT1G48350.1p  transcript_id AT1G48350.1  
At1g48360	chr1:017868661	0.0	W/17868661-17868753,17868837-17868948,17869038-17869426,17869518-17869613,17869716-17869980,17870080-17870142,17870604-17870678,17870775-17870890,17870989-17871059,17871160-17871247,17871319-17871459,17871533-17871738,17871824-17872097,17872185-17872418,17872494-17872946	AT1G48360.2  CDS  gene_syn F11A17.9, F11A17_9  go_component mitochondrion|GO:0005739||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides|GO:0016818||IEA  go_process biological_process|GO:0008150||ND  product hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding / zinc ion binding  note hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding / zinc ion binding; FUNCTIONS IN: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: VRR-NUC (InterPro:IPR014883), HIP116, Rad5p N-terminal (InterPro:IPR014905); Has 489 Blast hits to 396 proteins in 176 species: Archae - 0; Bacteria - 275; Metazoa - 53; Fungi - 66; Plants - 26; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT1G48360.2p  transcript_id AT1G48360.2  protein_id AT1G48360.2p  transcript_id AT1G48360.2  
At1g48360	chr1:017868661	0.0	W/17868661-17868753,17868837-17868948,17869038-17869426,17869518-17869613,17869716-17869980,17870080-17870142,17870604-17870678,17870775-17870890,17870989-17871059,17871160-17871247,17871319-17871459,17871533-17871738,17871824-17872097,17872185-17872436	AT1G48360.1  CDS  gene_syn F11A17.9, F11A17_9  go_component mitochondrion|GO:0005739||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides|GO:0016818||IEA  go_process biological_process|GO:0008150||ND  product hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding / zinc ion binding  note hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding / zinc ion binding; FUNCTIONS IN: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HIP116, Rad5p N-terminal (InterPro:IPR014905); Has 360 Blast hits to 350 proteins in 162 species: Archae - 0; Bacteria - 182; Metazoa - 51; Fungi - 64; Plants - 26; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT1G48360.1p  transcript_id AT1G48360.1  protein_id AT1G48360.1p  transcript_id AT1G48360.1  
At1g48360	chr1:017868661	0.0	W/17868661-17868753,17868837-17868948,17869038-17869426,17869518-17869613,17869716-17869980,17870080-17870142,17870604-17870678,17870775-17870890,17870989-17871059,17871160-17871247,17871319-17871459,17871678-17871710	AT1G48360.3  CDS  gene_syn F11A17.9, F11A17_9  go_component mitochondrion|GO:0005739||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides|GO:0016818||IEA  go_process biological_process|GO:0008150||ND  product hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding / zinc ion binding  note hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding / zinc ion binding; FUNCTIONS IN: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HIP116, Rad5p N-terminal (InterPro:IPR014905); Has 324 Blast hits to 323 proteins in 150 species: Archae - 0; Bacteria - 178; Metazoa - 45; Fungi - 50; Plants - 23; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT1G48360.3p  transcript_id AT1G48360.3  protein_id AT1G48360.3p  transcript_id AT1G48360.3  
At1g48370	chr1:017874560	0.0	W/17874560-17875022,17875209-17875366,17875458-17875555,17875631-17875765,17875866-17876055,17876126-17877256	AT1G48370.1  CDS  gene_syn F11A17.8, F11A17_8, YELLOW STRIPE LIKE 8, YSL8  gene YSL8  function Arabidopsis thaliana metal-nicotianamine transporter YSL4  go_component plasma membrane|GO:0005886|17317660|IDA  go_process oligopeptide transport|GO:0006857||ISS  go_function oligopeptide transporter activity|GO:0015198||ISS  product YSL8 (YELLOW STRIPE LIKE 8); oligopeptide transporter  note YELLOW STRIPE LIKE 8 (YSL8); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: YSL5 (YELLOW STRIPE LIKE 5); oligopeptide transporter (TAIR:AT3G17650.1); Has 997 Blast hits to 969 proteins in 281 species: Archae - 12; Bacteria - 436; Metazoa - 0; Fungi - 161; Plants - 251; Viruses - 1; Other Eukaryotes - 136 (source: NCBI BLink).  protein_id AT1G48370.1p  transcript_id AT1G48370.1  protein_id AT1G48370.1p  transcript_id AT1G48370.1  
At1g48380	chr1:017878880	0.0	C/17878880-17879203,17878684-17878794,17878165-17878595,17877637-17877931	AT1G48380.2  CDS  gene_syn F11A17.7, F11A17_7, HYP7, HYPOCOTYL 7, RHL1, ROOT HAIRLESS 1  gene RHL1  function Encodes a novel nuclear protein required for root hair initiation and ploidy-dependent cell growth. Its sequence has similarity to the C-terminal domain of mammalian DNA topo IIalpha. Shows in vitro DNA binding activity and is likely to be part of the topo VI complex by binding to subunit A.  go_component nucleolus|GO:0005730|9649505|IDA  go_process DNA endoreduplication|GO:0042023|16339310|IMP  go_process root hair initiation|GO:0048766|9649505|IMP  go_function DNA binding|GO:0003677|16339310|IDA  go_function protein binding|GO:0005515|16339310|IPI  product RHL1 (ROOT HAIRLESS 1); DNA binding / protein binding  note ROOT HAIRLESS 1 (RHL1); FUNCTIONS IN: protein binding, DNA binding; INVOLVED IN: root hair initiation, DNA endoreduplication; LOCATED IN: nucleolus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; Has 82 Blast hits to 78 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 22; Plants - 37; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G48380.2p  transcript_id AT1G48380.2  protein_id AT1G48380.2p  transcript_id AT1G48380.2  
At1g48380	chr1:017878880	0.0	C/17878880-17879203,17878684-17878794,17878509-17878595,17878165-17878415,17877637-17877931	AT1G48380.1  CDS  gene_syn F11A17.7, F11A17_7, HYP7, HYPOCOTYL 7, RHL1, ROOT HAIRLESS 1  gene RHL1  function Encodes a novel nuclear protein required for root hair initiation and ploidy-dependent cell growth. Its sequence has similarity to the C-terminal domain of mammalian DNA topo IIalpha. Shows in vitro DNA binding activity and is likely to be part of the topo VI complex by binding to subunit A.  go_component nucleolus|GO:0005730|9649505|IDA  go_process DNA endoreduplication|GO:0042023|16339310|IMP  go_process root hair initiation|GO:0048766|9649505|IMP  go_function DNA binding|GO:0003677|16339310|IDA  go_function protein binding|GO:0005515|16339310|IPI  product RHL1 (ROOT HAIRLESS 1); DNA binding / protein binding  note ROOT HAIRLESS 1 (RHL1); FUNCTIONS IN: protein binding, DNA binding; INVOLVED IN: root hair initiation, DNA endoreduplication; LOCATED IN: nucleolus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; Has 153 Blast hits to 141 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 44; Fungi - 35; Plants - 38; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT1G48380.1p  transcript_id AT1G48380.1  protein_id AT1G48380.1p  transcript_id AT1G48380.1  
At1g48390	chr1:017880082	0.0	C/17880082-17880903,17879803-17879946,17879448-17879723	AT1G48390.1  CDS  gene_syn F11A17.6, F11A17_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product syntaxin-related family protein  note syntaxin-related family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G48400.1); Has 366 Blast hits to 357 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 366; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G48390.1p  transcript_id AT1G48390.1  protein_id AT1G48390.1p  transcript_id AT1G48390.1  
At1g48400	chr1:017882770	0.0	C/17882770-17883855,17882537-17882677,17882136-17882450	AT1G48400.1  CDS  gene_syn F11A17.5, F11A17_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: syntaxin-related family protein (TAIR:AT1G48390.1); Has 112610 Blast hits to 16303 proteins in 740 species: Archae - 778; Bacteria - 40260; Metazoa - 20522; Fungi - 11185; Plants - 6580; Viruses - 1771; Other Eukaryotes - 31514 (source: NCBI BLink).  protein_id AT1G48400.1p  transcript_id AT1G48400.1  protein_id AT1G48400.1p  transcript_id AT1G48400.1  
At1g48405	chr1:017885569	0.0	C/17885569-17885614,17884645-17885492	AT1G48405.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: KIP1-like (InterPro:IPR011684); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17680.1); Has 119 Blast hits to 117 proteins in 34 species: Archae - 0; Bacteria - 22; Metazoa - 7; Fungi - 8; Plants - 57; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT1G48405.1p  transcript_id AT1G48405.1  protein_id AT1G48405.1p  transcript_id AT1G48405.1  
At1g48410	chr1:017891257	0.0	C/17891257-17891892,17890961-17891169,17890735-17890884,17890510-17890643,17890302-17890411,17890102-17890208,17889873-17890011,17889685-17889801,17889109-17889216,17888939-17889010,17888466-17888588,17888215-17888377,17887867-17888126,17887607-17887749,17887445-17887507,17887296-17887359,17887077-17887212,17886907-17886980,17886734-17886828,17886601-17886632,17886285-17886496	AT1G48410.1  CDS  gene_syn AGO1, ARGONAUTE 1, T1N15.2, T1N15_2  gene AGO1  function Encodes an RNA Slicer that selectively recruits microRNAs and siRNAs. There is currently no evidence that AGO1 Slicer is in a high molecular weight RNA-induced silencing complex (RISC). Mutants are defective in post-transcriptional gene silencing and have pleiotropic developmental and morphological defects. Through its action on the regulation of ARF17 expression, the protein regulates genes involved at the cross talk between auxin and light signaling during adventitious root development. AGO1 seems to be targeted for degradation by silencing suppressor F-box-containing proteins from Turnip yellow virus and Cucurbit aphid-borne yellow virus.  go_component nucleus|GO:0005634|17442570|IDA  go_component cytoplasm|GO:0005737|17442570|IDA  go_component cytoplasm|GO:0005737|9427751|TAS  go_component cytosol|GO:0005829|18433157|IDA  go_process virus induced gene silencing|GO:0009616|17158744|IDA  go_process response to auxin stimulus|GO:0009733|15829601|IGI  go_process embryonic development ending in seed dormancy|GO:0009793|9876176|IGI  go_process auxin metabolic process|GO:0009850|15829601|IGI  go_process leaf morphogenesis|GO:0009965|9427751|IMP  go_process response to far red light|GO:0010218|15829601|IGI  go_process RNA interference|GO:0016246|17558406|IMP  go_process posttranscriptional gene silencing|GO:0016441|11910010|IEP  go_process gene silencing by miRNA|GO:0035195|15131082|IEP  go_process gene silencing by miRNA|GO:0035195|15131082|IGI  go_process gene silencing by miRNA|GO:0035195|15131082|IMP  go_process adventitious root development|GO:0048830|15829601|IMP  go_function endoribonuclease activity|GO:0004521|16081530|IDA  go_function protein binding|GO:0005515|17869109|IPI  go_function siRNA binding|GO:0035197|16081530|IPI  go_function miRNA binding|GO:0035198|16081530|IPI  product AGO1 (ARGONAUTE 1); endoribonuclease/ miRNA binding / protein binding / siRNA binding  note ARGONAUTE 1 (AGO1); FUNCTIONS IN: protein binding, endoribonuclease activity, siRNA binding, miRNA binding; INVOLVED IN: in 10 processes; LOCATED IN: cytosol, nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Argonaute and Dicer protein, PAZ (InterPro:IPR003100); BEST Arabidopsis thaliana protein match is: ZLL (ZWILLE); translation initiation factor (TAIR:AT5G43810.1); Has 27170 Blast hits to 14262 proteins in 965 species: Archae - 20; Bacteria - 5010; Metazoa - 12124; Fungi - 2210; Plants - 4310; Viruses - 363; Other Eukaryotes - 3133 (source: NCBI BLink).  protein_id AT1G48410.1p  transcript_id AT1G48410.1  protein_id AT1G48410.1p  transcript_id AT1G48410.1  
At1g48410	chr1:017891257	0.0	C/17891257-17891892,17890961-17891169,17890735-17890884,17890510-17890649,17890302-17890411,17890102-17890208,17889873-17890011,17889685-17889801,17889109-17889216,17888939-17889010,17888466-17888588,17888215-17888377,17887867-17888126,17887607-17887749,17887445-17887507,17887296-17887359,17887077-17887212,17886907-17886980,17886734-17886828,17886601-17886632,17886285-17886496	AT1G48410.2  CDS  gene_syn AGO1, ARGONAUTE 1, T1N15.2, T1N15_2  gene AGO1  function Encodes an RNA Slicer that selectively recruits microRNAs and siRNAs. There is currently no evidence that AGO1 Slicer is in a high molecular weight RNA-induced silencing complex (RISC). Mutants are defective in post-transcriptional gene silencing and have pleiotropic developmental and morphological defects. Through its action on the regulation of ARF17 expression, the protein regulates genes involved at the cross talk between auxin and light signaling during adventitious root development. AGO1 seems to be targeted for degradation by silencing suppressor F-box-containing proteins from Turnip yellow virus and Cucurbit aphid-borne yellow virus.  go_component nucleus|GO:0005634|17442570|IDA  go_component cytoplasm|GO:0005737|17442570|IDA  go_component cytoplasm|GO:0005737|9427751|TAS  go_component cytosol|GO:0005829|18433157|IDA  go_process virus induced gene silencing|GO:0009616|17158744|IDA  go_process response to auxin stimulus|GO:0009733|15829601|IGI  go_process embryonic development ending in seed dormancy|GO:0009793|9876176|IGI  go_process auxin metabolic process|GO:0009850|15829601|IGI  go_process leaf morphogenesis|GO:0009965|9427751|IMP  go_process response to far red light|GO:0010218|15829601|IGI  go_process RNA interference|GO:0016246|17558406|IMP  go_process posttranscriptional gene silencing|GO:0016441|11910010|IEP  go_process gene silencing by miRNA|GO:0035195|15131082|IEP  go_process gene silencing by miRNA|GO:0035195|15131082|IGI  go_process gene silencing by miRNA|GO:0035195|15131082|IMP  go_process adventitious root development|GO:0048830|15829601|IMP  go_function endoribonuclease activity|GO:0004521|16081530|IDA  go_function protein binding|GO:0005515|17869109|IPI  go_function siRNA binding|GO:0035197|16081530|IPI  go_function miRNA binding|GO:0035198|16081530|IPI  product AGO1 (ARGONAUTE 1); endoribonuclease/ miRNA binding / protein binding / siRNA binding  note ARGONAUTE 1 (AGO1); FUNCTIONS IN: protein binding, endoribonuclease activity, siRNA binding, miRNA binding; INVOLVED IN: in 10 processes; LOCATED IN: cytosol, nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Argonaute and Dicer protein, PAZ (InterPro:IPR003100), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: ZLL (ZWILLE); translation initiation factor (TAIR:AT5G43810.1); Has 27210 Blast hits to 14266 proteins in 965 species: Archae - 20; Bacteria - 4994; Metazoa - 12179; Fungi - 2213; Plants - 4305; Viruses - 364; Other Eukaryotes - 3135 (source: NCBI BLink).  protein_id AT1G48410.2p  transcript_id AT1G48410.2  protein_id AT1G48410.2p  transcript_id AT1G48410.2  
At1g48420	chr1:017898630	0.0	C/17898630-17898803,17898284-17898544,17898090-17898200,17897897-17897988,17897678-17897770,17897533-17897590,17897340-17897453,17897086-17897183,17896767-17896971	AT1G48420.1  CDS  gene_syn D-CDES, D-CYSTEINE DESULFHYDRASE, T1N15.3, T1N15_3  gene D-CDES  function Encodes an enzyme that decomposes D-cysteine into pyruvate, H2S, and NH3. Only D-cysteine but not L-cysteine was converted by D-CDes to pyruvate, H2S, and NH3. Unlike homologous bacterial enzymes, it does not have 1-aminocyclopropane-1-carboxylate deaminase activity.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component mitochondrion|GO:0005739|15720402|IDA  go_function catalytic activity|GO:0003824||ISS  go_function 1-aminocyclopropane-1-carboxylate deaminase activity|GO:0008660|15720402|IDA  go_function D-cysteine desulfhydrase activity|GO:0019148|15720402|IDA  product D-CDES (D-CYSTEINE DESULFHYDRASE); 1-aminocyclopropane-1-carboxylate deaminase/ D-cysteine desulfhydrase/ catalytic  note D-CYSTEINE DESULFHYDRASE (D-CDES); FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate deaminase activity, D-cysteine desulfhydrase activity, catalytic activity; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Pyridoxal phosphate-dependent deaminase (InterPro:IPR005966); BEST Arabidopsis thaliana protein match is: catalytic/ pyridoxal phosphate binding (TAIR:AT3G26115.1); Has 1965 Blast hits to 1963 proteins in 584 species: Archae - 29; Bacteria - 1240; Metazoa - 35; Fungi - 69; Plants - 44; Viruses - 0; Other Eukaryotes - 548 (source: NCBI BLink).  protein_id AT1G48420.1p  transcript_id AT1G48420.1  protein_id AT1G48420.1p  transcript_id AT1G48420.1  
At1g48422	chr1:017899422	0.0	C/17899422-17900707	AT1G48422.1  pseudogenic_transcript  pseudo  function Encodes a defensin-like (DEFL) family protein.  
At1g48430	chr1:017906650	0.0	C/17906650-17906689,17906441-17906514,17906301-17906364,17906108-17906220,17905972-17906019,17905791-17905862,17905630-17905719,17905259-17905432,17905066-17905149,17904860-17904915,17904573-17904703,17904408-17904500,17904231-17904292,17903957-17904100,17903844-17903887,17903659-17903742,17903483-17903556,17903286-17903398,17903108-17903203,17902874-17902999	AT1G48430.1  CDS  gene_syn T1N15.4, T1N15_4  go_process glycerol metabolic process|GO:0006071||IEA  go_function glycerone kinase activity|GO:0004371||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process glycerol metabolic process|GO:0006071||ISS  go_function glycerone kinase activity|GO:0004371||ISS  product dihydroxyacetone kinase family protein  note dihydroxyacetone kinase family protein; FUNCTIONS IN: glycerone kinase activity, ATP binding; INVOLVED IN: glycerol metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dak phosphatase (InterPro:IPR004007), Dihydroxyacetone kinase (InterPro:IPR012734), Dak kinase (InterPro:IPR004006); BEST Arabidopsis thaliana protein match is: dihydroxyacetone kinase family protein (TAIR:AT3G17770.1); Has 2623 Blast hits to 2620 proteins in 533 species: Archae - 8; Bacteria - 1792; Metazoa - 85; Fungi - 145; Plants - 38; Viruses - 0; Other Eukaryotes - 555 (source: NCBI BLink).  protein_id AT1G48430.1p  transcript_id AT1G48430.1  protein_id AT1G48430.1p  transcript_id AT1G48430.1  
At1g48440	chr1:017907075	0.0	W/17907075-17907246,17907386-17907468,17908106-17908161,17908249-17908327	AT1G48440.1  CDS  gene_syn T1N15.5, T1N15_5  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17780.1); Has 61 Blast hits to 61 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G48440.1p  transcript_id AT1G48440.1  protein_id AT1G48440.1p  transcript_id AT1G48440.1  
At1g48450	chr1:017910214	0.0	C/17910214-17910345,17909672-17909967,17908746-17909589	AT1G48450.1  CDS  gene_syn T1N15.6, T1N15_6  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF760 (InterPro:IPR008479); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17800.1); Has 87 Blast hits to 87 proteins in 19 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G48450.1p  transcript_id AT1G48450.1  protein_id AT1G48450.1p  transcript_id AT1G48450.1  
At1g48450	chr1:017910214	0.0	C/17910214-17910345,17909672-17909967,17909041-17909589,17908882-17908933	AT1G48450.2  CDS  gene_syn T1N15.6, T1N15_6  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF760 (InterPro:IPR008479); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17800.1); Has 78 Blast hits to 78 proteins in 17 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G48450.2p  transcript_id AT1G48450.2  protein_id AT1G48450.2p  transcript_id AT1G48450.2  
At1g48460	chr1:017911469	0.0	W/17911469-17911558,17911654-17911696,17911784-17912113,17912474-17912814,17912931-17913149	AT1G48460.1  CDS  gene_syn T1N15.7, T1N15_7  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G63040.2); Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G48460.1p  transcript_id AT1G48460.1  protein_id AT1G48460.1p  transcript_id AT1G48460.1  
At1g48470	chr1:017913784	0.0	W/17913784-17913857,17914011-17914050,17914127-17914230,17914333-17914381,17914468-17914574,17914795-17914882,17914978-17915181,17915348-17915401,17915505-17915702,17915783-17915926	AT1G48470.1  CDS  gene_syn GLN1;5, T1N15.8, T1N15_8, glutamine synthetase 1;5  gene GLN1;5  function Encodes cytosolic glutamine synthase isozyme. Expression of mRNA is not detectable in roots.  go_component chloroplast|GO:0009507|18431481|IDA  go_process glutamine biosynthetic process|GO:0006542||IEA  go_process nitrogen compound metabolic process|GO:0006807||IEA  go_function glutamate-ammonia ligase activity|GO:0004356||ISS  go_function glutamate-ammonia ligase activity|GO:0004356||NAS  product GLN1;5 (glutamine synthetase 1;5); glutamate-ammonia ligase  note glutamine synthetase 1;5 (GLN1;5); FUNCTIONS IN: glutamate-ammonia ligase activity; INVOLVED IN: nitrogen compound metabolic process, glutamine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Glutamine synthetase, catalytic region (InterPro:IPR008146), Glutamine synthetase, beta-Grasp (InterPro:IPR008147), Glutamine synthetase/guanido kinase, catalytic region (InterPro:IPR014746); BEST Arabidopsis thaliana protein match is: ATGSKB6; copper ion binding / glutamate-ammonia ligase (TAIR:AT3G17820.1); Has 6578 Blast hits to 6576 proteins in 1877 species: Archae - 80; Bacteria - 2660; Metazoa - 374; Fungi - 159; Plants - 1086; Viruses - 3; Other Eukaryotes - 2216 (source: NCBI BLink).  protein_id AT1G48470.1p  transcript_id AT1G48470.1  protein_id AT1G48470.1p  transcript_id AT1G48470.1  
At1g48480	chr1:017918475	0.0	W/17918475-17919843,17920145-17920743	AT1G48480.1  CDS  gene_syn RECEPTOR-LIKE KINASE 1, RKL1, T1N15.9, T1N15_9  gene RKL1  function Arabidopsis thaliana receptor-like protein kinase (RKL1) gene  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product RKL1; ATP binding / kinase/ protein serine/threonine kinase  note RKL1; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: RLK902; ATP binding / kinase/ protein serine/threonine kinase (TAIR:AT3G17840.1); Has 103118 Blast hits to 80129 proteins in 2606 species: Archae - 58; Bacteria - 6658; Metazoa - 37081; Fungi - 5406; Plants - 40131; Viruses - 302; Other Eukaryotes - 13482 (source: NCBI BLink).  protein_id AT1G48480.1p  transcript_id AT1G48480.1  protein_id AT1G48480.1p  transcript_id AT1G48480.1  
At1g48490	chr1:017928054	0.0	C/17928054-17928597,17927831-17927895,17927553-17927735,17926098-17927471,17925832-17926004,17925451-17925682,17925230-17925322,17925013-17925153,17924830-17924922,17924416-17924602,17924002-17924087,17923670-17923758,17923444-17923495,17923302-17923358,17923027-17923200,17922846-17922923,17922345-17922431	AT1G48490.1  CDS  gene_syn T1N15.10, T1N15_10  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product kinase  note kinase; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), AGC-kinase, C-terminal (InterPro:IPR000961); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT3G17850.1); Has 91404 Blast hits to 90176 proteins in 3324 species: Archae - 84; Bacteria - 8439; Metazoa - 40077; Fungi - 8564; Plants - 16220; Viruses - 476; Other Eukaryotes - 17544 (source: NCBI BLink).  protein_id AT1G48490.1p  transcript_id AT1G48490.1  protein_id AT1G48490.1p  transcript_id AT1G48490.1  
At1g48490	chr1:017928054	0.0	C/17928054-17928597,17927831-17927895,17927553-17927735,17926098-17927471,17925832-17926004,17925451-17925682,17925230-17925322,17925013-17925153,17924830-17924922,17924416-17924602,17924002-17924087,17923670-17923758,17923444-17923495,17923302-17923358,17923027-17923200,17922846-17922923,17922345-17922431	AT1G48490.2  CDS  gene_syn T1N15.10, T1N15_10  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product kinase  note kinase; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT3G17850.1); Has 91404 Blast hits to 90176 proteins in 3324 species: Archae - 84; Bacteria - 8439; Metazoa - 40077; Fungi - 8564; Plants - 16220; Viruses - 476; Other Eukaryotes - 17544 (source: NCBI BLink).  protein_id AT1G48490.2p  transcript_id AT1G48490.2  protein_id AT1G48490.2p  transcript_id AT1G48490.2  
At1g48490	chr1:017928054	0.0	C/17928054-17928597,17927831-17927895,17927553-17927735,17926098-17927471,17925832-17926004,17925451-17925682,17925230-17925322,17925013-17925153,17924830-17924922,17924416-17924602,17924002-17924087,17923670-17923758,17923444-17923495,17923302-17923358,17923027-17923200,17922846-17922923,17922345-17922431	AT1G48490.3  CDS  gene_syn T1N15.10, T1N15_10  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product kinase  note kinase; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), AGC-kinase, C-terminal (InterPro:IPR000961); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT3G17850.1).  protein_id AT1G48490.3p  transcript_id AT1G48490.3  protein_id AT1G48490.3p  transcript_id AT1G48490.3  
At1g48500	chr1:017931658	0.0	W/17931658-17931733,17932980-17933152,17933274-17933437,17933532-17933616,17933819-17934086,17934188-17934248,17934328-17934433	AT1G48500.1  CDS  gene_syn JASMONATE-ZIM-DOMAIN PROTEIN 4, JAZ4, T1N15.11, T1N15_11, TIFY DOMAIN PROTEIN 6A, TIFY6A  gene JAZ4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product JAZ4 (JASMONATE-ZIM-DOMAIN PROTEIN 4)  note JASMONATE-ZIM-DOMAIN PROTEIN 4 (JAZ4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: JAZ3 (JASMONATE-ZIM-DOMAIN PROTEIN 3) (TAIR:AT3G17860.1); Has 182 Blast hits to 182 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 181; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G48500.1p  transcript_id AT1G48500.1  protein_id AT1G48500.1p  transcript_id AT1G48500.1  
At1g48500	chr1:017931658	0.0	W/17931658-17931733,17932980-17933152,17933274-17933437,17933532-17933616,17933819-17934086,17934188-17934255	AT1G48500.2  CDS  gene_syn JASMONATE-ZIM-DOMAIN PROTEIN 4, JAZ4, T1N15.11, T1N15_11, TIFY DOMAIN PROTEIN 6A, TIFY6A  gene JAZ4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product JAZ4 (JASMONATE-ZIM-DOMAIN PROTEIN 4)  note JASMONATE-ZIM-DOMAIN PROTEIN 4 (JAZ4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: JAZ3 (JASMONATE-ZIM-DOMAIN PROTEIN 3) (TAIR:AT3G17860.1); Has 162 Blast hits to 162 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 161; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G48500.2p  transcript_id AT1G48500.2  protein_id AT1G48500.2p  transcript_id AT1G48500.2  
At1g48500	chr1:017932994	0.0	W/17932994-17933152,17933274-17933437,17933532-17933616,17933819-17934086,17934188-17934255	AT1G48500.3  CDS  gene_syn JASMONATE-ZIM-DOMAIN PROTEIN 4, JAZ4, T1N15.11, T1N15_11, TIFY DOMAIN PROTEIN 6A, TIFY6A  gene JAZ4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product JAZ4 (JASMONATE-ZIM-DOMAIN PROTEIN 4)  note JASMONATE-ZIM-DOMAIN PROTEIN 4 (JAZ4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: JAZ3 (JASMONATE-ZIM-DOMAIN PROTEIN 3) (TAIR:AT3G17860.3); Has 162 Blast hits to 162 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 161; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G48500.3p  transcript_id AT1G48500.3  protein_id AT1G48500.3p  transcript_id AT1G48500.3  
At1g48510	chr1:017934889	0.0	W/17934889-17935033,17935119-17935210,17935303-17935526,17935769-17935961,17936055-17936338,17936435-17936651	AT1G48510.1  CDS  gene_syn T1N15.12, T1N15_12  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product cytochrome c oxidase assembly protein surfeit-related  note cytochrome c oxidase assembly protein surfeit-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Surfeit locus 1 (InterPro:IPR002994); BEST Arabidopsis thaliana protein match is: SURF1 (SURFEIT 1) (TAIR:AT3G17910.1); Has 287 Blast hits to 287 proteins in 59 species: Archae - 0; Bacteria - 14; Metazoa - 54; Fungi - 21; Plants - 20; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink).  protein_id AT1G48510.1p  transcript_id AT1G48510.1  protein_id AT1G48510.1p  transcript_id AT1G48510.1  
At1g48520	chr1:017940185	0.0	W/17940185-17940817,17940939-17941148,17941238-17941378,17941449-17941652,17941836-17942033,17942104-17942172,17942265-17942381,17942460-17942540	AT1G48520.1  CDS  gene_syn GATB, GLU-ADT SUBUNIT B  gene GATB  function Encodes Glu-tRNA(Gln) amidotransferase subunit B (from Genbank record AF239836).  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_process translation|GO:0006412||IEA  go_function ligase activity|GO:0016874||IEA  go_function carbon-nitrogen ligase activity, with glutamine as amido-N-donor|GO:0016884||IEA  go_process glutamyl-tRNA aminoacylation|GO:0006424||ISS  go_function glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity|GO:0050567||ISS  product GATB (GLU-ADT SUBUNIT B); carbon-nitrogen ligase, with glutamine as amido-N-donor / glutaminyl-tRNA synthase (glutamine-hydrolyzing)/ ligase  note GLU-ADT SUBUNIT B (GATB); FUNCTIONS IN: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor, ligase activity; INVOLVED IN: glutamyl-tRNA aminoacylation, translation; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GatB/Yqey (InterPro:IPR003789), Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal region (InterPro:IPR006075), Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site (InterPro:IPR017958), Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, central region (InterPro:IPR006107), Glutamyl-tRNA(Gln) amidotransferase, B subunit (InterPro:IPR004413), Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E (InterPro:IPR017959), Asn/Gln amidotransferase (InterPro:IPR018027); Has 6725 Blast hits to 6615 proteins in 1397 species: Archae - 345; Bacteria - 2418; Metazoa - 107; Fungi - 83; Plants - 32; Viruses - 0; Other Eukaryotes - 3740 (source: NCBI BLink).  protein_id AT1G48520.1p  transcript_id AT1G48520.1  protein_id AT1G48520.1p  transcript_id AT1G48520.1  
At1g48520	chr1:017940185	0.0	W/17940185-17940817,17940939-17941148,17941238-17941378,17941449-17941652,17941836-17942033,17942104-17942176,17942265-17942272	AT1G48520.3  CDS  gene_syn GATB, GLU-ADT SUBUNIT B  gene GATB  function Encodes Glu-tRNA(Gln) amidotransferase subunit B (from Genbank record AF239836).  go_component chloroplast|GO:0009507|18431481|IDA  go_process translation|GO:0006412||IEA  go_function ligase activity|GO:0016874||IEA  go_function carbon-nitrogen ligase activity, with glutamine as amido-N-donor|GO:0016884||IEA  go_process glutamyl-tRNA aminoacylation|GO:0006424||ISS  go_function glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity|GO:0050567||ISS  product GATB (GLU-ADT SUBUNIT B); carbon-nitrogen ligase, with glutamine as amido-N-donor / glutaminyl-tRNA synthase (glutamine-hydrolyzing)/ ligase  note GLU-ADT SUBUNIT B (GATB); FUNCTIONS IN: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor, ligase activity; INVOLVED IN: glutamyl-tRNA aminoacylation, translation; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GatB/Yqey (InterPro:IPR003789), Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal region (InterPro:IPR006075), Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site (InterPro:IPR017958), Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, central region (InterPro:IPR006107), Glutamyl-tRNA(Gln) amidotransferase, B subunit (InterPro:IPR004413), Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E (InterPro:IPR017959), Asn/Gln amidotransferase (InterPro:IPR018027); Has 6289 Blast hits to 6237 proteins in 1397 species: Archae - 290; Bacteria - 2404; Metazoa - 107; Fungi - 83; Plants - 31; Viruses - 0; Other Eukaryotes - 3374 (source: NCBI BLink).  protein_id AT1G48520.3p  transcript_id AT1G48520.3  protein_id AT1G48520.3p  transcript_id AT1G48520.3  
At1g48520	chr1:017940185	0.0	W/17940185-17940817,17940939-17941148,17941238-17941378,17941449-17941652,17941836-17942075	AT1G48520.2  CDS  gene_syn GATB, GLU-ADT SUBUNIT B  gene GATB  function Encodes Glu-tRNA(Gln) amidotransferase subunit B (from Genbank record AF239836).  go_component chloroplast|GO:0009507|18431481|IDA  go_process translation|GO:0006412||IEA  go_function ligase activity|GO:0016874||IEA  go_function carbon-nitrogen ligase activity, with glutamine as amido-N-donor|GO:0016884||IEA  go_process glutamyl-tRNA aminoacylation|GO:0006424||ISS  go_function glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity|GO:0050567||ISS  product GATB (GLU-ADT SUBUNIT B); carbon-nitrogen ligase, with glutamine as amido-N-donor / glutaminyl-tRNA synthase (glutamine-hydrolyzing)/ ligase  note GLU-ADT SUBUNIT B (GATB); FUNCTIONS IN: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor, ligase activity; INVOLVED IN: glutamyl-tRNA aminoacylation, translation; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site (InterPro:IPR017958), Glutamyl-tRNA(Gln) amidotransferase, B subunit (InterPro:IPR004413), Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, central region (InterPro:IPR006107), Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E (InterPro:IPR017959), Asn/Gln amidotransferase (InterPro:IPR018027), Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal region (InterPro:IPR006075); Has 6244 Blast hits to 6200 proteins in 1397 species: Archae - 280; Bacteria - 2397; Metazoa - 107; Fungi - 83; Plants - 31; Viruses - 0; Other Eukaryotes - 3346 (source: NCBI BLink).  protein_id AT1G48520.2p  transcript_id AT1G48520.2  protein_id AT1G48520.2p  transcript_id AT1G48520.2  
At1g48530	chr1:017944010	0.0	C/17944010-17944220,17943749-17943911,17943508-17943661	AT1G48530.1  CDS  gene_syn T1N15.15, T1N15_15  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: proteasome inhibitor-related (TAIR:AT3G53970.2); Has 28 Blast hits to 28 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G48530.1p  transcript_id AT1G48530.1  protein_id AT1G48530.1p  transcript_id AT1G48530.1  
At1g48540	chr1:017945540	0.0	W/17945540-17945980,17946081-17946338,17946573-17946815,17946930-17947079,17947318-17948690,17949042-17949115,17949199-17949280,17949365-17949490,17949570-17949676,17949994-17950151,17950226-17950405	AT1G48540.1  CDS  gene_syn T1N15.16, T1N15_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: protein binding (TAIR:AT3G17920.1); Has 5420 Blast hits to 4081 proteins in 277 species: Archae - 0; Bacteria - 1405; Metazoa - 2734; Fungi - 311; Plants - 272; Viruses - 10; Other Eukaryotes - 688 (source: NCBI BLink).  protein_id AT1G48540.1p  transcript_id AT1G48540.1  protein_id AT1G48540.1p  transcript_id AT1G48540.1  
At1g48540	chr1:017945540	0.0	W/17945540-17945980,17946081-17946338,17946573-17946815,17946930-17947079,17947318-17948690,17949042-17949115,17949199-17949280,17949365-17949490,17949570-17949676,17949994-17950151,17950262-17950405	AT1G48540.2  CDS  gene_syn T1N15.16, T1N15_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: protein binding (TAIR:AT3G17920.1); Has 5420 Blast hits to 4081 proteins in 277 species: Archae - 0; Bacteria - 1405; Metazoa - 2734; Fungi - 311; Plants - 272; Viruses - 10; Other Eukaryotes - 688 (source: NCBI BLink).  protein_id AT1G48540.2p  transcript_id AT1G48540.2  protein_id AT1G48540.2p  transcript_id AT1G48540.2  
At1g48550	chr1:017952583	0.0	C/17952583-17952645,17952410-17952502,17952265-17952329,17952119-17952173,17951944-17952033,17951771-17951855,17951595-17951690,17951327-17951511,17951160-17951248,17950934-17951033,17950792-17950854	AT1G48550.1  CDS  gene_syn T1N15.17, T1N15_17  go_component retromer complex|GO:0030904||IEA  go_process vacuolar transport|GO:0007034||IEA  go_process intracellular protein transport|GO:0006886||ISS  go_process retrograde transport, endosome to Golgi|GO:0042147||ISS  go_function molecular_function|GO:0003674||ND  product vacuolar protein sorting-associated protein 26 family protein / VPS26 family protein  note vacuolar protein sorting-associated protein 26 family protein / VPS26 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport, vacuolar transport, retrograde transport, endosome to Golgi; LOCATED IN: retromer complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 26 (InterPro:IPR005377); BEST Arabidopsis thaliana protein match is: VPS26A (VACUOLAR PROTEIN SORTING 26A) (TAIR:AT5G53530.1); Has 224 Blast hits to 222 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 109; Fungi - 17; Plants - 38; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT1G48550.1p  transcript_id AT1G48550.1  protein_id AT1G48550.1p  transcript_id AT1G48550.1  
At1g48560	chr1:017952935	0.0	W/17952935-17953430,17953673-17955108	AT1G48560.1  CDS  gene_syn T1N15.18, T1N15_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; Has 40 Blast hits to 40 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G48560.1p  transcript_id AT1G48560.1  protein_id AT1G48560.1p  transcript_id AT1G48560.1  
At1g48570	chr1:017957333	0.0	C/17957333-17957661,17957147-17957264,17956584-17957056,17956215-17956325,17955996-17956115,17955671-17955769,17955455-17955572	AT1G48570.1  CDS  gene_syn T1N15.19, T1N15_19  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function binding|GO:0005488||ISS  product zinc finger (Ran-binding) family protein  note zinc finger (Ran-binding) family protein; FUNCTIONS IN: binding, zinc ion binding; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: zinc finger (Ran-binding) family protein (TAIR:AT1G70650.1); Has 1117 Blast hits to 656 proteins in 128 species: Archae - 0; Bacteria - 0; Metazoa - 379; Fungi - 125; Plants - 353; Viruses - 0; Other Eukaryotes - 260 (source: NCBI BLink).  protein_id AT1G48570.1p  transcript_id AT1G48570.1  protein_id AT1G48570.1p  transcript_id AT1G48570.1  
At1g48580	chr1:017960184	0.0	C/17960184-17960610,17960019-17960104,17959588-17959650,17959378-17959479,17959202-17959267,17958963-17959098,17958403-17958887	AT1G48580.1  CDS  gene_syn T1N15.20, T1N15_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; Has 64 Blast hits to 64 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G48580.1p  transcript_id AT1G48580.1  protein_id AT1G48580.1p  transcript_id AT1G48580.1  
At1g48590	chr1:017962979	0.0	W/17962979-17963104,17963788-17963883,17963987-17964274	AT1G48590.1  CDS  gene_syn T1N15.21, T1N15_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT3G17980.1); Has 3564 Blast hits to 3055 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 2428; Fungi - 312; Plants - 569; Viruses - 0; Other Eukaryotes - 255 (source: NCBI BLink).  protein_id AT1G48590.1p  transcript_id AT1G48590.1  protein_id AT1G48590.1p  transcript_id AT1G48590.1  
At1g48598	chr1:017965933	0.0	W/17965933-17966010	AT1G48598.1  CDS  gene_syn CPuORF31, Conserved peptide upstream open reading frame 31  gene CPuORF31  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF31 represents a conserved upstream opening reading frame relative to major ORF AT1G48600.1  product CPuORF31 (Conserved peptide upstream open reading frame 31)  note Conserved peptide upstream open reading frame 31 (CPuORF31); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G48598.1p  transcript_id AT1G48598.1  protein_id AT1G48598.1p  transcript_id AT1G48598.1  
At1g48600	chr1:017966074	0.0	W/17966074-17966089,17966416-17966531,17966616-17966753,17966848-17966985,17967072-17967215,17967621-17967731,17967826-17967967,17968058-17968338,17968439-17968600,17968696-17968749,17968817-17968891,17968979-17969077	AT1G48600.2  CDS  gene_syn T1N15.23, T1N15_23  go_process metabolic process|GO:0008152||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_function phosphoethanolamine N-methyltransferase activity|GO:0000234||ISS  product phosphoethanolamine N-methyltransferase 2, putative (NMT2)  note phosphoethanolamine N-methyltransferase 2, putative (NMT2); FUNCTIONS IN: methyltransferase activity, phosphoethanolamine N-methyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: sperm cell, cotyledon, male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: XPL1 (XIPOTL 1); methyltransferase/ phosphoethanolamine N-methyltransferase (TAIR:AT3G18000.1); Has 13276 Blast hits to 12887 proteins in 1498 species: Archae - 390; Bacteria - 8641; Metazoa - 259; Fungi - 577; Plants - 323; Viruses - 4; Other Eukaryotes - 3082 (source: NCBI BLink).  protein_id AT1G48600.2p  transcript_id AT1G48600.2  protein_id AT1G48600.2p  transcript_id AT1G48600.2  
At1g48600	chr1:017966448	0.0	W/17966448-17966531,17966616-17966753,17966848-17966985,17967072-17967215,17967621-17967731,17967826-17967967,17968058-17968338,17968439-17968600,17968696-17968749,17968817-17968891,17968979-17969077	AT1G48600.1  CDS  gene_syn T1N15.23, T1N15_23  go_process metabolic process|GO:0008152||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_function phosphoethanolamine N-methyltransferase activity|GO:0000234||ISS  product phosphoethanolamine N-methyltransferase 2, putative (NMT2)  note phosphoethanolamine N-methyltransferase 2, putative (NMT2); FUNCTIONS IN: methyltransferase activity, phosphoethanolamine N-methyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: sperm cell, cotyledon, male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: XPL1 (XIPOTL 1); methyltransferase/ phosphoethanolamine N-methyltransferase (TAIR:AT3G18000.1); Has 13252 Blast hits to 12872 proteins in 1497 species: Archae - 388; Bacteria - 8633; Metazoa - 257; Fungi - 577; Plants - 321; Viruses - 4; Other Eukaryotes - 3072 (source: NCBI BLink).  protein_id AT1G48600.1p  transcript_id AT1G48600.1  protein_id AT1G48600.1p  transcript_id AT1G48600.1  
At1g48605	chr1:017969769	0.0	C/17969769-17970080,17969395-17969688	AT1G48605.1  CDS  gene_syn ATHAL3B, HAL3, HAL3B, HALOTOLERANCE DETERMINANT 3, HALOTOLERANCE DETERMINANT 3B  gene ATHAL3B  function Encodes a protein similar to yeast HAL3, which regulates the cell cycle and tolerance to salt stress through inhibition of the PPZ1 type-1 protein phosphatase. AtHAL3b mRNA levels are induced by salt stress. HAL3B presumably encodes for phosphopantothenoylcysteine decarboxylase being involved in Coenzyme A biosynthesis as indicated by functional complementation of a double mutant hal3 aaBb.  go_component cellular_component|GO:0005575||ND  go_process coenzyme A biosynthetic process|GO:0015937|16415216|IMP  go_process hyperosmotic salinity response|GO:0042538|10652125|IEP  go_function phosphopantothenoylcysteine decarboxylase activity|GO:0004633|16415216|IGI  go_function electron carrier activity|GO:0009055||ISS  go_function FMN binding|GO:0010181|10986463|ISS  product ATHAL3B; FMN binding / electron carrier/ phosphopantothenoylcysteine decarboxylase  note ATHAL3B; FUNCTIONS IN: phosphopantothenoylcysteine decarboxylase activity, electron carrier activity, FMN binding; INVOLVED IN: hyperosmotic salinity response, coenzyme A biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: fruit, guard cell, flower; CONTAINS InterPro DOMAIN/s: Flavoprotein (InterPro:IPR003382); BEST Arabidopsis thaliana protein match is: ATHAL3A; FMN binding / phosphopantothenoylcysteine decarboxylase (TAIR:AT3G18030.1); Has 4639 Blast hits to 4639 proteins in 1326 species: Archae - 107; Bacteria - 2202; Metazoa - 101; Fungi - 179; Plants - 41; Viruses - 5; Other Eukaryotes - 2004 (source: NCBI BLink).  protein_id AT1G48605.1p  transcript_id AT1G48605.1  protein_id AT1G48605.1p  transcript_id AT1G48605.1  
At1g48610	chr1:017972310	0.0	C/17972310-17972798,17971322-17971429	AT1G48610.2  CDS  gene_syn T1N15.24, T1N15_24  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product AT hook motif-containing protein  note AT hook motif-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: AT hook, DNA-binding, conserved site (InterPro:IPR017956); Has 740 Blast hits to 531 proteins in 156 species: Archae - 0; Bacteria - 201; Metazoa - 271; Fungi - 70; Plants - 100; Viruses - 4; Other Eukaryotes - 94 (source: NCBI BLink).  protein_id AT1G48610.2p  transcript_id AT1G48610.2  protein_id AT1G48610.2p  transcript_id AT1G48610.2  
At1g48610	chr1:017972310	0.0	C/17972310-17972798,17971367-17971429,17971027-17971113	AT1G48610.1  CDS  gene_syn T1N15.24, T1N15_24  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product AT hook motif-containing protein  note AT hook motif-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: AT hook, DNA-binding, conserved site (InterPro:IPR017956); Has 983 Blast hits to 732 proteins in 201 species: Archae - 0; Bacteria - 301; Metazoa - 302; Fungi - 103; Plants - 123; Viruses - 5; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT1G48610.1p  transcript_id AT1G48610.1  protein_id AT1G48610.1p  transcript_id AT1G48610.1  
At1g48620	chr1:017976062	0.0	C/17976062-17976301,17975083-17975976,17974472-17974546,17974148-17974378	AT1G48620.1  CDS  gene_syn HON5, High Mobility Group Family A 5, T1N15.25, T1N15_25  gene HON5  function This gene is predicted to encodes a histone H1/H5 family member. A plant line expressing an RNAi construct targeted against HON5 shows a reduced level of agrobacterium-mediated root transformation.  go_component nucleolus|GO:0005730|15496452|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_function DNA binding|GO:0003677||IEA  go_component nucleosome|GO:0000786||ISS  go_component nucleus|GO:0005634||ISS  go_process nucleosome assembly|GO:0006334||ISS  go_process DNA mediated transformation|GO:0009294|17827277|IMP  go_function DNA binding|GO:0003677||ISS  product HON5 (High Mobility Group Family A 5); DNA binding  note High Mobility Group Family A 5 (HON5); FUNCTIONS IN: DNA binding; INVOLVED IN: DNA mediated transformation, nucleosome assembly; LOCATED IN: nucleolus, nucleus, chloroplast, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), AT hook, DNA-binding, conserved site (InterPro:IPR017956), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: HON4; DNA binding (TAIR:AT3G18035.1); Has 5569 Blast hits to 4436 proteins in 471 species: Archae - 2; Bacteria - 555; Metazoa - 2349; Fungi - 938; Plants - 1077; Viruses - 178; Other Eukaryotes - 470 (source: NCBI BLink).  protein_id AT1G48620.1p  transcript_id AT1G48620.1  protein_id AT1G48620.1p  transcript_id AT1G48620.1  
At1g48625	chr1:017979561	0.0	W/17979561-17980815	AT1G48625.1  pseudogenic_transcript  pseudo  function pseudogene of F-box family protein  
At1g48630	chr1:017982390	0.0	C/17982390-17983268,17981977-17982078	AT1G48630.1  CDS  gene_syn F11I4.18, F11I4_18, RACK1B_AT, RECEPTOR FOR ACTIVATED C KINASE 1 B  gene RACK1B_AT  function Encodes a protein with similarity to mammalian RACKs. RACKs function to shuttle activated protein kinase C to different subcellular sites and may also function as a scaffold through physical interactions with other proteins. RACK1B has no phenotype on its own and probably acts redundantly with RACK1A and RACK1C.  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_process root development|GO:0048364|18947417|IGI  go_process shoot development|GO:0048367|18947417|IGI  go_function nucleotide binding|GO:0000166||ISS  product RACK1B_AT (RECEPTOR FOR ACTIVATED C KINASE 1 B); nucleotide binding  note RECEPTOR FOR ACTIVATED C KINASE 1 B (RACK1B_AT); FUNCTIONS IN: nucleotide binding; INVOLVED IN: shoot development, root development; LOCATED IN: cytosolic ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C); nucleotide binding (TAIR:AT3G18130.1); Has 66160 Blast hits to 27679 proteins in 708 species: Archae - 62; Bacteria - 6756; Metazoa - 30431; Fungi - 13200; Plants - 6052; Viruses - 9; Other Eukaryotes - 9650 (source: NCBI BLink).  protein_id AT1G48630.1p  transcript_id AT1G48630.1  protein_id AT1G48630.1p  transcript_id AT1G48630.1  
At1g48635	chr1:017983951	0.0	W/17983951-17983964,17984145-17984306,17984397-17984587,17984661-17984791,17984899-17984969,17985074-17985110,17985176-17985303,17985391-17985606,17985714-17985966	AT1G48635.2  CDS  gene_syn PEROXIN 3, PEROXIN 3-2, PEX3, PEX3-2  gene PEX3  go_component mitochondrion|GO:0005739||IEA  go_component integral to peroxisomal membrane|GO:0005779||IEA  go_component peroxisome|GO:0005777||ISS  go_process peroxisome organization|GO:0007031|17478547|IMP  go_function molecular_function|GO:0003674||ND  product peroxin-3 family protein  note PEROXIN 3 (PEX3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: peroxisome organization; LOCATED IN: mitochondrion, peroxisome, integral to peroxisomal membrane; CONTAINS InterPro DOMAIN/s: Peroxin-3 (InterPro:IPR006966); BEST Arabidopsis thaliana protein match is: peroxin-3 family protein (TAIR:AT3G18160.1).  protein_id AT1G48635.2p  transcript_id AT1G48635.2  protein_id AT1G48635.2p  transcript_id AT1G48635.2  
At1g48635	chr1:017983951	0.0	W/17983951-17983964,17984145-17984306,17984397-17984587,17984661-17984791,17985176-17985303,17985391-17985606,17985714-17985966	AT1G48635.1  CDS  gene_syn PEROXIN 3, PEROXIN 3-2, PEX3, PEX3-2  gene PEX3  go_component mitochondrion|GO:0005739||IEA  go_component integral to peroxisomal membrane|GO:0005779||IEA  go_component peroxisome|GO:0005777||ISS  go_process peroxisome organization|GO:0007031|17478547|IMP  go_function molecular_function|GO:0003674||ND  product peroxin-3 family protein  note PEROXIN 3 (PEX3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: peroxisome organization; LOCATED IN: mitochondrion, peroxisome, integral to peroxisomal membrane; CONTAINS InterPro DOMAIN/s: Peroxin-3 (InterPro:IPR006966); BEST Arabidopsis thaliana protein match is: peroxin-3 family protein (TAIR:AT3G18160.1); Has 219 Blast hits to 219 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 86; Plants - 25; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G48635.1p  transcript_id AT1G48635.1  protein_id AT1G48635.1p  transcript_id AT1G48635.1  
At1g48640	chr1:017986358	0.0	W/17986358-17986420,17986521-17986675,17986929-17987112,17987218-17987417,17987588-17987981,17988175-17988280,17988463-17988554,17988670-17988738,17988893-17988991	AT1G48640.1  CDS  gene_syn F11I4.17, F11I4_17  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product lysine and histidine specific transporter, putative  note lysine and histidine specific transporter, putative; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: LHT1; amino acid transmembrane transporter (TAIR:AT5G40780.1); Has 2563 Blast hits to 2559 proteins in 216 species: Archae - 2; Bacteria - 76; Metazoa - 856; Fungi - 386; Plants - 883; Viruses - 0; Other Eukaryotes - 360 (source: NCBI BLink).  protein_id AT1G48640.1p  transcript_id AT1G48640.1  protein_id AT1G48640.1p  transcript_id AT1G48640.1  
At1g48650	chr1:017994792	0.0	C/17994792-17995169,17994554-17994708,17994375-17994462,17993964-17994194,17993771-17993866,17993490-17993678,17993154-17993313,17992937-17993067,17992654-17992824,17992289-17992561,17991966-17992160,17991664-17991867,17991504-17991573,17991270-17991418,17990833-17991138,17990678-17990737,17990436-17990588,17990229-17990339,17989670-17990143	AT1G48650.1  CDS  gene_syn F11I4.16, F11I4_16  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function double-stranded RNA binding|GO:0003725||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function nucleic acid binding|GO:0003676||ISS  go_function helicase activity|GO:0004386||ISS  go_function ATP binding|GO:0005524||ISS  product helicase domain-containing protein  note helicase domain-containing protein; FUNCTIONS IN: in 6 functions; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated region (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Double-stranded RNA binding (InterPro:IPR001159), Region of unknown function DUF1605 (InterPro:IPR011709), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP binding / ATP-dependent helicase/ RNA binding / double-stranded RNA binding / helicase/ nucleic acid binding (TAIR:AT2G01130.1); Has 8848 Blast hits to 6085 proteins in 891 species: Archae - 14; Bacteria - 3051; Metazoa - 2465; Fungi - 1108; Plants - 455; Viruses - 50; Other Eukaryotes - 1705 (source: NCBI BLink).  protein_id AT1G48650.1p  transcript_id AT1G48650.1  protein_id AT1G48650.1p  transcript_id AT1G48650.1  
At1g48650	chr1:017994792	0.0	C/17994792-17995169,17994554-17994708,17994375-17994462,17993964-17994194,17993771-17993866,17993490-17993678,17993154-17993313,17992937-17993067,17992654-17992824,17992289-17992561,17991966-17992160,17991664-17991867,17991504-17991573,17991270-17991418,17990833-17991138,17990678-17990737,17990436-17990588,17990229-17990339,17989708-17990143,17989517-17989581	AT1G48650.2  CDS  gene_syn F11I4.16, F11I4_16  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function double-stranded RNA binding|GO:0003725||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function nucleic acid binding|GO:0003676||ISS  go_function helicase activity|GO:0004386||ISS  go_function ATP binding|GO:0005524||ISS  product helicase domain-containing protein  note helicase domain-containing protein; FUNCTIONS IN: in 6 functions; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated region (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Double-stranded RNA binding (InterPro:IPR001159), Region of unknown function DUF1605 (InterPro:IPR011709), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP binding / ATP-dependent helicase/ RNA binding / double-stranded RNA binding / helicase/ nucleic acid binding (TAIR:AT2G01130.1).  protein_id AT1G48650.2p  transcript_id AT1G48650.2  protein_id AT1G48650.2p  transcript_id AT1G48650.2  
At1g48660	chr1:017997704	0.0	C/17997704-17997972,17997527-17997628,17995948-17997298	AT1G48660.1  CDS  gene_syn F11I4.15, F11I4_15  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive GH3 family protein  note auxin-responsive GH3 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, hypocotyl; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: auxin-responsive GH3 family protein (TAIR:AT1G48670.1); Has 705 Blast hits to 675 proteins in 109 species: Archae - 0; Bacteria - 201; Metazoa - 49; Fungi - 2; Plants - 218; Viruses - 0; Other Eukaryotes - 235 (source: NCBI BLink).  protein_id AT1G48660.1p  transcript_id AT1G48660.1  protein_id AT1G48660.1p  transcript_id AT1G48660.1  
At1g48670	chr1:018000929	0.0	C/18000929-18001200,18000579-18000680,18000214-18000298,17998946-18000064	AT1G48670.1  CDS  gene_syn F11I4.14, F11I4_14  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive GH3 family protein  note auxin-responsive GH3 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: auxin-responsive GH3 family protein (TAIR:AT1G48660.1); Has 656 Blast hits to 650 proteins in 109 species: Archae - 0; Bacteria - 178; Metazoa - 50; Fungi - 2; Plants - 218; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink).  protein_id AT1G48670.1p  transcript_id AT1G48670.1  protein_id AT1G48670.1p  transcript_id AT1G48670.1  
At1g48680	chr1:018002752	0.0	C/18002752-18006845	AT1G48680.1  mRNA_TE_gene  pseudo  gene_syn F11I4.20  note Transposable element gene, copia-like retrotransposon family, has a 1.2e-298 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At1g48690	chr1:018009610	0.0	C/18009610-18009878,18009393-18009494,18009105-18009306	AT1G48690.1  CDS  gene_syn F11I4.13, F11I4_13  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive GH3 family protein  note auxin-responsive GH3 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: auxin-responsive GH3 family protein (TAIR:AT5G51470.1); Has 507 Blast hits to 505 proteins in 69 species: Archae - 0; Bacteria - 114; Metazoa - 8; Fungi - 0; Plants - 196; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).  protein_id AT1G48690.1p  transcript_id AT1G48690.1  protein_id AT1G48690.1p  transcript_id AT1G48690.1  
At1g48698	chr1:018010729	0.0	W/18010729-18011214	AT1G48698.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G48700  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G48698.1  
At1g48700	chr1:018012767	0.0	C/18012767-18012823,18012524-18012700,18012280-18012430,18012095-18012181,18011833-18011957,18011605-18011723,18011417-18011528,18011285-18011332	AT1G48700.1  CDS  gene_syn F11I4.12, F11I4_12  go_process protein metabolic process|GO:0019538||IEA  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||IEA  go_component cellular_component|GO:0005575||ND  product iron ion binding / oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors  note iron ion binding / oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, iron ion binding; INVOLVED IN: protein metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620); BEST Arabidopsis thaliana protein match is: iron ion binding / oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (TAIR:AT5G43660.1); Has 272 Blast hits to 271 proteins in 44 species: Archae - 0; Bacteria - 16; Metazoa - 199; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G48700.1p  transcript_id AT1G48700.1  protein_id AT1G48700.1p  transcript_id AT1G48700.1  
At1g48710	chr1:018013632	0.0	W/18013632-18017690	AT1G48710.1  mRNA_TE_gene  pseudo  gene_syn F11I4.21, F11I4_21  note Transposable element gene, copia-like retrotransposon family, has a 1.1e-252 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At1g48720	chr1:018018148	0.0	W/18018148-18018441	AT1G48720.1  CDS  gene_syn F11I4.11, F11I4_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 139 Blast hits to 139 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G48720.1p  transcript_id AT1G48720.1  protein_id AT1G48720.1p  transcript_id AT1G48720.1  
At1g48730	chr1:018022201	0.0	C/18022201-18022277,18021946-18022136,18021645-18021822,18020337-18020466	AT1G48730.1  CDS  gene_syn F11I4.10, F11I4_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G48730.1p  transcript_id AT1G48730.1  protein_id AT1G48730.1p  transcript_id AT1G48730.1  
At1g48740	chr1:018025673	0.0	C/18025673-18025960,18025324-18025371,18025061-18025237,18024803-18024989,18024671-18024757,18024128-18024252,18023904-18024025,18023716-18023827,18023590-18023625	AT1G48740.1  CDS  gene_syn F11I4.9, F11I4_9  go_process protein metabolic process|GO:0019538||IEA  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||IEA  go_component cellular_component|GO:0005575||ND  product iron ion binding / oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors  note iron ion binding / oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, iron ion binding; INVOLVED IN: protein metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620); BEST Arabidopsis thaliana protein match is: iron ion binding / oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (TAIR:AT5G43660.1); Has 135 Blast hits to 134 proteins in 35 species: Archae - 0; Bacteria - 14; Metazoa - 72; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G48740.1p  transcript_id AT1G48740.1  protein_id AT1G48740.1p  transcript_id AT1G48740.1  
At1g48742	chr1:018026838	0.0	C/18026838-18027009	AT1G48742.1  miRNA  gene_syn MICRORNA 157D, MIR157D  gene MIR157D  function Encodes a microRNA that targets several SPL family members, including SPL3,4, and 5. By regulating the expression of SPL3 (and probably also SPL4 and SPL5), this microRNA regulates vegetative phase change. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGACAGAAGAUAGAGAGCAC  go_component cellular_component|GO:0005575||ND  go_process gene silencing by miRNA|GO:0035195|15200956|TAS  go_function molecular_function|GO:0003674||ND  product MIR157D (MICRORNA 157D); miRNA  transcript_id AT1G48742.1  
At1g48745	chr1:018030829	0.0	W/18030829-18031206	AT1G48745.1  CDS  product unknown protein  note unknown protein; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G48745.1p  transcript_id AT1G48745.1  protein_id AT1G48745.1p  transcript_id AT1G48745.1  
At1g48750	chr1:018036019	0.0	W/18036019-18036303	AT1G48750.1  CDS  gene_syn F11I4.8, F11I4_8  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT3G18280.1); Has 197 Blast hits to 194 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 197; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G48750.1p  transcript_id AT1G48750.1  protein_id AT1G48750.1p  transcript_id AT1G48750.1  
At1g48760	chr1:018036652	0.0	C/18036652-18039261	AT1G48760.1  CDS  gene_syn F11I4.7, F11I4_7, delta-ADR, delta-adaptin  gene delta-ADR  go_component Golgi apparatus|GO:0005794||IEA  go_component membrane coat|GO:0030117||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process protein transport|GO:0015031||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function protein transporter activity|GO:0008565||IEA  go_function clathrin binding|GO:0030276||ISS  product delta-ADR (delta-adaptin); binding / clathrin binding / protein binding / protein transporter  note delta-adaptin (delta-ADR); FUNCTIONS IN: protein transporter activity, protein binding, clathrin binding, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; LOCATED IN: membrane coat, Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Adaptor protein complex AP-3, delta subunit (InterPro:IPR017105), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: binding / clathrin binding / protein binding / protein transporter (TAIR:AT1G60070.1); Has 3246 Blast hits to 2927 proteins in 214 species: Archae - 0; Bacteria - 17; Metazoa - 1547; Fungi - 534; Plants - 230; Viruses - 0; Other Eukaryotes - 918 (source: NCBI BLink).  protein_id AT1G48760.1p  transcript_id AT1G48760.1  protein_id AT1G48760.1p  transcript_id AT1G48760.1  
At1g48760	chr1:018036652	0.0	C/18036652-18039261	AT1G48760.2  CDS  gene_syn F11I4.7, F11I4_7, delta-ADR, delta-adaptin  gene delta-ADR  go_component Golgi apparatus|GO:0005794||IEA  go_component membrane coat|GO:0030117||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process protein transport|GO:0015031||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function protein transporter activity|GO:0008565||IEA  go_function clathrin binding|GO:0030276||ISS  product delta-ADR (delta-adaptin); binding / clathrin binding / protein binding / protein transporter  note delta-adaptin (delta-ADR); FUNCTIONS IN: protein transporter activity, protein binding, clathrin binding, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; LOCATED IN: membrane coat, Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Adaptor protein complex AP-3, delta subunit (InterPro:IPR017105), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: binding / clathrin binding / protein binding / protein transporter (TAIR:AT1G60070.1); Has 3246 Blast hits to 2927 proteins in 214 species: Archae - 0; Bacteria - 17; Metazoa - 1547; Fungi - 534; Plants - 230; Viruses - 0; Other Eukaryotes - 918 (source: NCBI BLink).  protein_id AT1G48760.2p  transcript_id AT1G48760.2  protein_id AT1G48760.2p  transcript_id AT1G48760.2  
At1g48760	chr1:018036652	0.0	C/18036652-18039261	AT1G48760.3  CDS  gene_syn F11I4.7, F11I4_7, delta-ADR, delta-adaptin  gene delta-ADR  go_component Golgi apparatus|GO:0005794||IEA  go_component membrane coat|GO:0030117||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process protein transport|GO:0015031||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function protein transporter activity|GO:0008565||IEA  go_function clathrin binding|GO:0030276||ISS  product delta-ADR (delta-adaptin); binding / clathrin binding / protein binding / protein transporter  note delta-adaptin (delta-ADR); FUNCTIONS IN: protein transporter activity, protein binding, clathrin binding, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; LOCATED IN: membrane coat, Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Adaptor protein complex AP-3, delta subunit (InterPro:IPR017105), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: binding / clathrin binding / protein binding / protein transporter (TAIR:AT1G60070.1); Has 3246 Blast hits to 2927 proteins in 214 species: Archae - 0; Bacteria - 17; Metazoa - 1547; Fungi - 534; Plants - 230; Viruses - 0; Other Eukaryotes - 918 (source: NCBI BLink).  protein_id AT1G48760.3p  transcript_id AT1G48760.3  protein_id AT1G48760.3p  transcript_id AT1G48760.3  
At1g48770	chr1:018040285	0.0	W/18040285-18040758,18040851-18040916	AT1G48770.1  CDS  gene_syn F11I4.6, F11I4_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18295.1); Has 142 Blast hits to 142 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 142; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G48770.1p  transcript_id AT1G48770.1  protein_id AT1G48770.1p  transcript_id AT1G48770.1  
At1g48780	chr1:018041989	0.0	W/18041989-18042744	AT1G48780.1  CDS  gene_syn F11I4.5, F11I4_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18300.1); Has 54 Blast hits to 54 proteins in 8 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G48780.1p  transcript_id AT1G48780.1  protein_id AT1G48780.1p  transcript_id AT1G48780.1  
At1g48790	chr1:018047314	0.0	C/18047314-18047427,18046804-18046868,18046633-18046708,18046374-18046550,18046100-18046194,18045868-18045970,18045737-18045783,18045255-18045582,18044839-18044928,18044678-18044740,18044525-18044599,18044330-18044392,18044188-18044240,18043925-18044099	AT1G48790.1  CDS  gene_syn F11I4.4, F11I4_4  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_function molecular_function|GO:0003674||ND  product mov34 family protein  note mov34 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16144.1); Has 807 Blast hits to 679 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 425; Fungi - 178; Plants - 110; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).  protein_id AT1G48790.1p  transcript_id AT1G48790.1  protein_id AT1G48790.1p  transcript_id AT1G48790.1  
At1g48800	chr1:018049844	0.0	W/18049844-18050098,18050182-18050458,18051291-18051669,18051765-18051983,18052102-18052249,18052349-18052597,18052691-18052975	AT1G48800.1  CDS  gene_syn F11I4.3, F11I4_3  go_process metabolic process|GO:0008152||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function lyase activity|GO:0016829||IEA  product terpene synthase/cyclase family protein  note terpene synthase/cyclase family protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase/cyclase family protein (TAIR:AT1G48820.1); Has 1043 Blast hits to 1031 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1040; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G48800.1p  transcript_id AT1G48800.1  protein_id AT1G48800.1p  transcript_id AT1G48800.1  
At1g48810	chr1:018053369	0.0	C/18053369-18054359	AT1G48810.1  mRNA_TE_gene  pseudo  gene_syn F11I4.19  note Transposable element gene, copia-like retrotransposon family, has a 7.2e-46 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea)  
At1g48820	chr1:018055229	0.0	W/18055229-18055483,18055552-18055760,18056814-18057182,18057273-18057491,18058536-18058632,18058741-18058989,18059080-18059367	AT1G48820.1  CDS  gene_syn F11I4.2, F11I4_2  go_process metabolic process|GO:0008152||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function lyase activity|GO:0016829||IEA  product terpene synthase/cyclase family protein  note terpene synthase/cyclase family protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; EXPRESSED IN: leaf whorl, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase/cyclase family protein (TAIR:AT1G48800.1); Has 1020 Blast hits to 1008 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1017; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G48820.1p  transcript_id AT1G48820.1  protein_id AT1G48820.1p  transcript_id AT1G48820.1  
At1g48830	chr1:018060861	0.0	C/18060861-18060935,18060711-18060784,18060474-18060597,18060057-18060239,18059854-18059973	AT1G48830.1  CDS  gene_syn F11I4.1, F11I4_1  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S7 (RPS7A)  note 40S ribosomal protein S7 (RPS7A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, plasma membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S7e (InterPro:IPR000554); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S7 (RPS7B) (TAIR:AT3G02560.2); Has 554 Blast hits to 554 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 251; Fungi - 93; Plants - 108; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).  protein_id AT1G48830.1p  transcript_id AT1G48830.1  protein_id AT1G48830.1p  transcript_id AT1G48830.1  
At1g48830	chr1:018060861	0.0	C/18060861-18060935,18060711-18060784,18060474-18060597,18060057-18060239,18059854-18059973	AT1G48830.2  CDS  gene_syn F11I4.1, F11I4_1  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S7 (RPS7A)  note 40S ribosomal protein S7 (RPS7A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, plasma membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S7e (InterPro:IPR000554); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S7 (RPS7B) (TAIR:AT3G02560.2); Has 554 Blast hits to 554 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 251; Fungi - 93; Plants - 108; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).  protein_id AT1G48830.2p  transcript_id AT1G48830.2  protein_id AT1G48830.2p  transcript_id AT1G48830.2  
At1g48840	chr1:018061931	0.0	W/18061931-18062115,18062281-18062515,18062596-18062768,18062844-18062983,18063064-18063241,18063330-18063664,18063744-18063982,18064051-18064163,18064243-18064489,18064581-18064811	AT1G48840.1  CDS  gene_syn T24P22.6, T24P22_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF639 (InterPro:IPR006927); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18350.1); Has 84 Blast hits to 81 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G48840.1p  transcript_id AT1G48840.1  protein_id AT1G48840.1p  transcript_id AT1G48840.1  
At1g48850	chr1:018067818	0.0	C/18067818-18067956,18067469-18067619,18067319-18067395,18067174-18067232,18066947-18067030,18066748-18066840,18066422-18066502,18066082-18066213,18065884-18065986,18065700-18065794,18065547-18065616,18065399-18065457	AT1G48850.3  CDS  gene_syn EMB1144, T24P22.3, T24P22_3, embryo defective 1144  gene EMB1144  go_component nucleolus|GO:0005730|15496452|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_function chorismate synthase activity|GO:0004107||IEA  go_process aromatic amino acid family biosynthetic process|GO:0009073|1718979|TAS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product EMB1144 (embryo defective 1144); chorismate synthase  note embryo defective 1144 (EMB1144); FUNCTIONS IN: chorismate synthase activity; INVOLVED IN: embryonic development ending in seed dormancy, aromatic amino acid family biosynthetic process; LOCATED IN: nucleolus, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chorismate synthase (InterPro:IPR000453); Has 6333 Blast hits to 6323 proteins in 1406 species: Archae - 144; Bacteria - 2791; Metazoa - 2; Fungi - 97; Plants - 71; Viruses - 0; Other Eukaryotes - 3228 (source: NCBI BLink).  protein_id AT1G48850.3p  transcript_id AT1G48850.3  protein_id AT1G48850.3p  transcript_id AT1G48850.3  
At1g48850	chr1:018067818	0.0	C/18067818-18067956,18067469-18067619,18067319-18067395,18067174-18067232,18066947-18067030,18066748-18066840,18066422-18066502,18066082-18066213,18065884-18065986,18065700-18065794,18065551-18065616,18065379-18065463,18065154-18065299	AT1G48850.1  CDS  gene_syn EMB1144, T24P22.3, T24P22_3, embryo defective 1144  gene EMB1144  go_component nucleolus|GO:0005730|15496452|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_function chorismate synthase activity|GO:0004107||IEA  go_process aromatic amino acid family biosynthetic process|GO:0009073|1718979|TAS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product EMB1144 (embryo defective 1144); chorismate synthase  note embryo defective 1144 (EMB1144); FUNCTIONS IN: chorismate synthase activity; INVOLVED IN: embryonic development ending in seed dormancy, aromatic amino acid family biosynthetic process; LOCATED IN: nucleolus, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chorismate synthase (InterPro:IPR000453); Has 6609 Blast hits to 6585 proteins in 1408 species: Archae - 144; Bacteria - 2798; Metazoa - 2; Fungi - 97; Plants - 73; Viruses - 0; Other Eukaryotes - 3495 (source: NCBI BLink).  protein_id AT1G48850.1p  transcript_id AT1G48850.1  protein_id AT1G48850.1p  transcript_id AT1G48850.1  
At1g48850	chr1:018067818	0.0	C/18067818-18067956,18067469-18067619,18067319-18067395,18067174-18067232,18066947-18067030,18066748-18066840,18066422-18066502,18066082-18066213,18065884-18065986,18065700-18065794,18065551-18065616,18065399-18065461	AT1G48850.2  CDS  gene_syn EMB1144, T24P22.3, T24P22_3, embryo defective 1144  gene EMB1144  go_component nucleolus|GO:0005730|15496452|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_function chorismate synthase activity|GO:0004107||IEA  go_process aromatic amino acid family biosynthetic process|GO:0009073|1718979|TAS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product EMB1144 (embryo defective 1144); chorismate synthase  note embryo defective 1144 (EMB1144); FUNCTIONS IN: chorismate synthase activity; INVOLVED IN: embryonic development ending in seed dormancy, aromatic amino acid family biosynthetic process; LOCATED IN: nucleolus, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chorismate synthase (InterPro:IPR000453); Has 6335 Blast hits to 6325 proteins in 1406 species: Archae - 144; Bacteria - 2791; Metazoa - 2; Fungi - 97; Plants - 71; Viruses - 0; Other Eukaryotes - 3230 (source: NCBI BLink).  protein_id AT1G48850.2p  transcript_id AT1G48850.2  protein_id AT1G48850.2p  transcript_id AT1G48850.2  
At1g48860	chr1:018070904	0.0	C/18070904-18071074,18070563-18070807,18070325-18070478,18069883-18070097,18069683-18069800,18069324-18069534,18068892-18069247	AT1G48860.2  CDS  gene_syn T24P22.2  go_component chloroplast|GO:0009507|18431481|IDA  go_function catalytic activity|GO:0003824||IEA  go_function 3-phosphoshikimate 1-carboxyvinyltransferase activity|GO:0003866||IEA  go_function transferase activity, transferring alkyl or aryl (other than methyl) groups|GO:0016765||IEA  go_component chloroplast|GO:0009507|3481024|TAS  go_process aromatic amino acid family biosynthetic process|GO:0009073|3481024|TAS  go_process glyphosate metabolic process|GO:0018920|3481024|IMP  product 3-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putative  note 3-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putative; FUNCTIONS IN: 3-phosphoshikimate 1-carboxyvinyltransferase activity, transferase activity, transferring alkyl or aryl (other than methyl) groups, catalytic activity; INVOLVED IN: glyphosate metabolic process, aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: 3-phosphoshikimate 1-carboxyvinyltransferase, core (InterPro:IPR001986), 3-phosphoshikimate 1-carboxyvinyltransferase, subgroup (InterPro:IPR006264), 3-phosphoshikimate 1-carboxyvinyltransferase (InterPro:IPR016228), RNA 3&apos;-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (InterPro:IPR013792); BEST Arabidopsis thaliana protein match is: 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase (TAIR:AT2G45300.1); Has 8280 Blast hits to 8280 proteins in 1486 species: Archae - 140; Bacteria - 4639; Metazoa - 4; Fungi - 98; Plants - 162; Viruses - 0; Other Eukaryotes - 3237 (source: NCBI BLink).  protein_id AT1G48860.2p  transcript_id AT1G48860.2  protein_id AT1G48860.2p  transcript_id AT1G48860.2  
At1g48860	chr1:018071193	0.0	C/18071193-18071331,18070904-18071106,18070563-18070807,18070325-18070478,18069883-18070097,18069683-18069800,18069324-18069534,18069186-18069247,18068892-18069110	AT1G48860.1  CDS  gene_syn T24P22.2  go_component chloroplast|GO:0009507|18431481|IDA  go_function catalytic activity|GO:0003824||IEA  go_function 3-phosphoshikimate 1-carboxyvinyltransferase activity|GO:0003866||IEA  go_function transferase activity, transferring alkyl or aryl (other than methyl) groups|GO:0016765||IEA  go_component chloroplast|GO:0009507|3481024|TAS  go_process aromatic amino acid family biosynthetic process|GO:0009073|3481024|TAS  go_process glyphosate metabolic process|GO:0018920|3481024|IMP  product 3-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putative  note 3-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putative; FUNCTIONS IN: 3-phosphoshikimate 1-carboxyvinyltransferase activity, catalytic activity, transferase activity, transferring alkyl or aryl (other than methyl) groups; INVOLVED IN: glyphosate metabolic process, aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: 3-phosphoshikimate 1-carboxyvinyltransferase, core (InterPro:IPR001986), 3-phosphoshikimate 1-carboxyvinyltransferase, subgroup (InterPro:IPR006264), RNA 3&apos;-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (InterPro:IPR013792); BEST Arabidopsis thaliana protein match is: 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase (TAIR:AT2G45300.1); Has 9038 Blast hits to 9035 proteins in 1558 species: Archae - 140; Bacteria - 5092; Metazoa - 4; Fungi - 108; Plants - 172; Viruses - 0; Other Eukaryotes - 3522 (source: NCBI BLink).  protein_id AT1G48860.1p  transcript_id AT1G48860.1  protein_id AT1G48860.1p  transcript_id AT1G48860.1  
At1g48870	chr1:018073606	0.0	C/18073606-18074457,18073421-18073511,18073170-18073327,18072876-18073086,18072325-18072794	AT1G48870.1  CDS  gene_syn T24P22.7  go_component protein phosphatase type 2A complex|GO:0000159||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein phosphatase type 2A regulator activity|GO:0008601||IEA  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_process signal transduction|GO:0007165||ISS  go_function signal transducer activity|GO:0004871||ISS  product WD-40 repeat family protein  note WD-40 repeat family protein; FUNCTIONS IN: protein phosphatase type 2A regulator activity, signal transducer activity; INVOLVED IN: signal transduction; LOCATED IN: protein phosphatase type 2A complex, heterotrimeric G-protein complex; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2A, regulatory subunit PR55 (InterPro:IPR000009), WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein (TAIR:AT1G64610.2); Has 25332 Blast hits to 16442 proteins in 516 species: Archae - 36; Bacteria - 3914; Metazoa - 11168; Fungi - 4844; Plants - 2054; Viruses - 0; Other Eukaryotes - 3316 (source: NCBI BLink).  protein_id AT1G48870.1p  transcript_id AT1G48870.1  protein_id AT1G48870.1p  transcript_id AT1G48870.1  
At1g48880	chr1:018081033	0.0	W/18081033-18081928,18082025-18082183,18082291-18082564,18082642-18082650	AT1G48880.1  CDS  gene_syn F27K7.9, F27K7_9  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G06080.2); Has 713 Blast hits to 703 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 709; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G48880.1p  transcript_id AT1G48880.1  protein_id AT1G48880.1p  transcript_id AT1G48880.1  
At1g48890	chr1:018082902	0.0	C/18082902-18084169	AT1G48890.1  mRNA_TE_gene  pseudo  gene_syn F27K7.12  note Transposable element gene, copia-like retrotransposon family, has a 3.9e-32 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)  
At1g48900	chr1:018087513	0.0	C/18087513-18087743,18087337-18087436,18087089-18087242,18086291-18086441,18086062-18086210,18085848-18085948,18085597-18085754,18085394-18085508,18084972-18085300	AT1G48900.1  CDS  gene_syn F27K7.8, F27K7_8  go_component signal recognition particle|GO:0048500||IEA  go_process SRP-dependent cotranslational protein targeting to membrane|GO:0006614||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function GTP binding|GO:0005525||IEA  go_function 7S RNA binding|GO:0008312||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component signal recognition particle, endoplasmic reticulum targeting|GO:0005786||ISS  go_process SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition|GO:0006617||ISS  go_function mRNA binding|GO:0003729||ISS  go_function GTP binding|GO:0005525||ISS  go_function 7S RNA binding|GO:0008312||ISS  product signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C)  note signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C); FUNCTIONS IN: 7S RNA binding, mRNA binding, nucleoside-triphosphatase activity, GTP binding, nucleotide binding; INVOLVED IN: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition, SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: signal recognition particle, signal recognition particle, endoplasmic reticulum targeting; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Signal recognition particle, SRP54 subunit, helical bundle (InterPro:IPR013822), Signal recognition particle, SRP54 subunit, M-domain (InterPro:IPR004125), Signal recognition particle, SRP54 subunit (InterPro:IPR006325), Signal recognition particle, SRP54 subunit, GTPase (InterPro:IPR000897); BEST Arabidopsis thaliana protein match is: signal recognition particle 54 kDa protein 2 / SRP54 (SRP-54B) (TAIR:AT5G49500.1); Has 12023 Blast hits to 12019 proteins in 1590 species: Archae - 312; Bacteria - 5666; Metazoa - 264; Fungi - 192; Plants - 147; Viruses - 0; Other Eukaryotes - 5442 (source: NCBI BLink).  protein_id AT1G48900.1p  transcript_id AT1G48900.1  protein_id AT1G48900.1p  transcript_id AT1G48900.1  
At1g48900	chr1:018087513	0.0	C/18087513-18087743,18087337-18087436,18087089-18087242,18086291-18086441,18086062-18086210,18085848-18085948,18085597-18085754,18085394-18085508,18085207-18085300,18085031-18085073	AT1G48900.2  CDS  gene_syn F27K7.8, F27K7_8  go_component signal recognition particle|GO:0048500||IEA  go_process SRP-dependent cotranslational protein targeting to membrane|GO:0006614||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function GTP binding|GO:0005525||IEA  go_function 7S RNA binding|GO:0008312||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component signal recognition particle, endoplasmic reticulum targeting|GO:0005786||ISS  go_process SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition|GO:0006617||ISS  go_function mRNA binding|GO:0003729||ISS  go_function GTP binding|GO:0005525||ISS  go_function 7S RNA binding|GO:0008312||ISS  product signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C)  note signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C); FUNCTIONS IN: 7S RNA binding, mRNA binding, nucleoside-triphosphatase activity, GTP binding, nucleotide binding; INVOLVED IN: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition, SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: signal recognition particle, signal recognition particle, endoplasmic reticulum targeting; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Signal recognition particle, SRP54 subunit, helical bundle (InterPro:IPR013822), Signal recognition particle, SRP54 subunit, M-domain (InterPro:IPR004125), Signal recognition particle, SRP54 subunit (InterPro:IPR006325), Signal recognition particle, SRP54 subunit, GTPase (InterPro:IPR000897); BEST Arabidopsis thaliana protein match is: ATHSRP54A (ARABIDOPSIS THALIANA SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT); 7S RNA binding / GTP binding / mRNA binding / nucleoside-triphosphatase/ nucleotide binding (TAIR:AT1G15310.1); Has 11809 Blast hits to 11805 proteins in 1589 species: Archae - 312; Bacteria - 5656; Metazoa - 264; Fungi - 192; Plants - 145; Viruses - 0; Other Eukaryotes - 5240 (source: NCBI BLink).  protein_id AT1G48900.2p  transcript_id AT1G48900.2  protein_id AT1G48900.2p  transcript_id AT1G48900.2  
At1g48910	chr1:018091681	0.0	W/18091681-18092289,18092665-18092898,18093311-18093436,18093592-18093774	AT1G48910.1  CDS  gene_syn F27K7.7, F27K7_7, YUC10  gene YUC10  go_function monooxygenase activity|GO:0004497||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_component cellular_component|GO:0005575||ND  go_process anatomical structure morphogenesis|GO:0009653|17704214|IGI  go_function monooxygenase activity|GO:0004497||ISS  product YUC10; FAD binding / monooxygenase/ oxidoreductase  note YUC10; FUNCTIONS IN: oxidoreductase activity, monooxygenase activity, FAD binding; INVOLVED IN: anatomical structure morphogenesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Monooxygenase, FAD-binding (InterPro:IPR002938), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: YUC11; FAD binding / NADP or NADPH binding / flavin-containing monooxygenase/ monooxygenase/ oxidoreductase (TAIR:AT1G21430.1); Has 7084 Blast hits to 7077 proteins in 811 species: Archae - 19; Bacteria - 3148; Metazoa - 646; Fungi - 975; Plants - 351; Viruses - 0; Other Eukaryotes - 1945 (source: NCBI BLink).  protein_id AT1G48910.1p  transcript_id AT1G48910.1  protein_id AT1G48910.1p  transcript_id AT1G48910.1  
At1g48912	chr1:018094900	0.0	W/18094900-18095046	AT1G48912.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G48912.1p  transcript_id AT1G48912.1  protein_id AT1G48912.1p  transcript_id AT1G48912.1  
At1g48920	chr1:018098186	0.0	W/18098186-18098212,18098336-18098375,18098657-18098817,18098905-18099075,18099166-18099264,18099360-18099455,18099580-18099660,18099770-18099898,18100014-18100061,18100146-18100231,18100313-18100433,18100521-18100627,18100716-18100889,18100987-18101291,18101394-18101422	AT1G48920.1  CDS  gene_syn ATNUC-L1, F27K7.6, F27K7_6, PARALLEL 1, PARL1  gene ATNUC-L1  function Encodes the predominant form of the two nucleolin proteins found in Arabidopsis. This protein is involved in rRNA processing, ribosome biosynthesis, and vascular pattern formation. PARL1 localizes to the nucleolus and parl1 mutants accumulate elevated levels of the unspliced 35S pre-rRNA. parl1 mutants also have defects in cotyledon, leaf, sepal, and petal vein patterning and have reduced stature, reduced fertility, increased bushiness, and reduced root length. The sugar-induced expression of ribosome proteins is also reduced in parl1 mutants.  go_component nucleolus|GO:0005730|15496452|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component nucleolus|GO:0005730|17286797|IDA  go_process endonucleolytic cleavages during rRNA processing|GO:0000478|17369435|IMP  go_process rRNA processing|GO:0006364|17286797|IMP  go_process response to sucrose stimulus|GO:0009744|17286797|IEP  go_process response to glucose stimulus|GO:0009749|17286797|IEP  go_process leaf vascular tissue pattern formation|GO:0010305|17369435|IMP  go_process cotyledon vascular tissue pattern formation|GO:0010588|17369435|IMP  go_process ribosome biogenesis|GO:0042254|17286797|TAS  go_process root development|GO:0048364|17369435|IMP  go_process leaf development|GO:0048366|17369435|IMP  go_process shoot development|GO:0048367|17369435|IMP  go_process petal vascular tissue pattern formation|GO:0080056|17369435|IMP  go_process sepal vascular tissue pattern formation|GO:0080057|17369435|IMP  go_function nucleic acid binding|GO:0003676||ISS  product ATNUC-L1; nucleic acid binding / nucleotide binding  note ATNUC-L1; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: in 12 processes; LOCATED IN: nucleolus; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: ATRANGAP1 (RAN GTPASE-ACTIVATING PROTEIN 1); nucleic acid binding / nucleotide binding (TAIR:AT3G18610.1); Has 200201 Blast hits to 87321 proteins in 2392 species: Archae - 353; Bacteria - 37895; Metazoa - 78458; Fungi - 27388; Plants - 13612; Viruses - 1535; Other Eukaryotes - 40960 (source: NCBI BLink).  protein_id AT1G48920.1p  transcript_id AT1G48920.1  protein_id AT1G48920.1p  transcript_id AT1G48920.1  
At1g48930	chr1:018104375	0.0	C/18104375-18104587,18103557-18103970,18103371-18103457,18103114-18103278,18102740-18103027,18102334-18102661,18102200-18102250,18101782-18102119	AT1G48930.1  CDS  gene_syn Arabidopsis thaliana glycosyl hydrolase 9C1, AtGH9C1, F27K7.5  gene AtGH9C1  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product AtGH9C1 (Arabidopsis thaliana glycosyl hydrolase 9C1); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds  note Arabidopsis thaliana glycosyl hydrolase 9C1 (AtGH9C1); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: AtGH9C2 (Arabidopsis thaliana glycosyl hydrolase 9C2); carbohydrate binding / catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G64390.1); Has 1179 Blast hits to 1166 proteins in 191 species: Archae - 0; Bacteria - 362; Metazoa - 126; Fungi - 14; Plants - 624; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT1G48930.1p  transcript_id AT1G48930.1  protein_id AT1G48930.1p  transcript_id AT1G48930.1  
At1g48940	chr1:018106239	0.0	C/18106239-18106422,18105808-18106157	AT1G48940.1  CDS  gene_syn F27K7.4  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function copper ion binding|GO:0005507||ISS  product plastocyanin-like domain-containing protein  note plastocyanin-like domain-containing protein; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to membrane; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: plastocyanin-like domain-containing protein (TAIR:AT3G18590.1); Has 679 Blast hits to 672 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 679; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G48940.1p  transcript_id AT1G48940.1  protein_id AT1G48940.1p  transcript_id AT1G48940.1  
At1g48950	chr1:018107063	0.0	W/18107063-18107151,18107403-18107625,18107755-18107878,18107994-18108334,18108608-18109349,18109443-18109621,18110022-18110108	AT1G48950.1  CDS  gene_syn F27K7.14  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC-like (InterPro:IPR012935); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G17210.1); Has 163 Blast hits to 157 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 66; Fungi - 49; Plants - 38; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G48950.1p  transcript_id AT1G48950.1  protein_id AT1G48950.1p  transcript_id AT1G48950.1  
At1g48953	chr1:018111090	0.0	C/18111090-18111380	AT1G48953.1  CDS  product unknown protein  note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35066.1); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G48953.1p  transcript_id AT1G48953.1  protein_id AT1G48953.1p  transcript_id AT1G48953.1  
At1g48960	chr1:018112552	0.0	W/18112552-18112779,18112868-18112989,18113093-18113281,18113430-18113550	AT1G48960.1  CDS  gene_syn F27K7.3  go_process response to stress|GO:0006950||IEA  go_component cellular_component|GO:0005575||ND  go_process response to stress|GO:0006950||ISS  go_function molecular_function|GO:0003674||ND  product universal stress protein (USP) family protein  note universal stress protein (USP) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729); Has 91 Blast hits to 91 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G48960.1p  transcript_id AT1G48960.1  protein_id AT1G48960.1p  transcript_id AT1G48960.1  
At1g48970	chr1:018116986	0.0	C/18116986-18117547,18115683-18115811,18115242-18115588,18114357-18115101,18114174-18114273,18114031-18114085,18113868-18113930	AT1G48970.1  CDS  gene_syn F27K7.2  go_process cellular metabolic process|GO:0044237||IEA  go_component eukaryotic translation initiation factor 2B complex|GO:0005851||ISS  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  go_function GTP binding|GO:0005525||ISS  product GTP binding / translation initiation factor  note GTP binding / translation initiation factor; FUNCTIONS IN: GTP binding, translation initiation factor activity; INVOLVED IN: translational initiation, cellular metabolic process; LOCATED IN: eukaryotic translation initiation factor 2B complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor 2B related (InterPro:IPR000649); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 2B family protein / eIF-2B family protein (TAIR:AT5G38640.1); Has 4781 Blast hits to 3476 proteins in 634 species: Archae - 198; Bacteria - 1124; Metazoa - 798; Fungi - 509; Plants - 157; Viruses - 5; Other Eukaryotes - 1990 (source: NCBI BLink).  protein_id AT1G48970.1p  transcript_id AT1G48970.1  protein_id AT1G48970.1p  transcript_id AT1G48970.1  
At1g48980	chr1:018118715	0.0	W/18118715-18118805,18119232-18119546,18119628-18119698,18119785-18119853,18119939-18120098,18120235-18120251	AT1G48980.4  CDS  gene_syn F27J15.23, F27J15_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, LP.02 two leaves visible, D bilateral stage, LP.12 twelve leaves visible; BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT2G17970.2); Has 64 Blast hits to 64 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G48980.4p  transcript_id AT1G48980.4  protein_id AT1G48980.4p  transcript_id AT1G48980.4  
At1g48980	chr1:018118715	0.0	W/18118715-18118805,18119232-18119546,18119628-18119698,18119785-18120098,18120235-18120306,18120379-18120511	AT1G48980.1  CDS  gene_syn F27J15.23, F27J15_23  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product oxidoreductase  note oxidoreductase; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, LP.02 two leaves visible, D bilateral stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT2G17970.2); Has 149 Blast hits to 149 proteins in 43 species: Archae - 0; Bacteria - 5; Metazoa - 64; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G48980.1p  transcript_id AT1G48980.1  protein_id AT1G48980.1p  transcript_id AT1G48980.1  
At1g48980	chr1:018118715	0.0	W/18118715-18118805,18119232-18119546,18119628-18119698,18119785-18120098,18120235-18120306,18120397-18120511	AT1G48980.3  CDS  gene_syn F27J15.23, F27J15_23  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product oxidoreductase  note oxidoreductase; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, LP.02 two leaves visible, D bilateral stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT2G17970.2); Has 138 Blast hits to 138 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 64; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G48980.3p  transcript_id AT1G48980.3  protein_id AT1G48980.3p  transcript_id AT1G48980.3  
At1g48980	chr1:018118715	0.0	W/18118715-18118805,18119244-18119546,18119628-18119698,18119785-18120098,18120235-18120306,18120379-18120511	AT1G48980.2  CDS  gene_syn F27J15.23, F27J15_23  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product oxidoreductase  note oxidoreductase; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, LP.02 two leaves visible, D bilateral stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT2G17970.2); Has 141 Blast hits to 141 proteins in 42 species: Archae - 0; Bacteria - 5; Metazoa - 56; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G48980.2p  transcript_id AT1G48980.2  protein_id AT1G48980.2p  transcript_id AT1G48980.2  
At1g48990	chr1:018121470	0.0	W/18121470-18121979	AT1G48990.1  CDS  gene_syn F27J15.22, F27J15_22  go_component monolayer-surrounded lipid storage body|GO:0012511||IEA  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  go_process lipid storage|GO:0019915||ISS  go_function molecular_function|GO:0003674||ND  product glycine-rich protein / oleosin  note glycine-rich protein / oleosin; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lipid storage; LOCATED IN: monolayer-surrounded lipid storage body, integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136); BEST Arabidopsis thaliana protein match is: glycine-rich protein / oleosin (TAIR:AT3G18570.1); Has 238 Blast hits to 238 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 238; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G48990.1p  transcript_id AT1G48990.1  protein_id AT1G48990.1p  transcript_id AT1G48990.1  
At1g49000	chr1:018123559	0.0	C/18123559-18124029	AT1G49000.1  CDS  gene_syn F27J15.21, F27J15_21  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: stem; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18560.1); Has 50 Blast hits to 50 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G49000.1p  transcript_id AT1G49000.1  protein_id AT1G49000.1p  transcript_id AT1G49000.1  
At1g49005	chr1:018128686	0.0	C/18128686-18128985	AT1G49005.1  CDS  gene_syn CLAVATA3/ESR-RELATED 11, CLE11  gene CLE11  function Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can partially replace CLV3 function in vivo.  go_component apoplast|GO:0048046|11457943|RCA  go_process signal transduction|GO:0007165||ISS  go_function receptor binding|GO:0005102||ISS  go_function protein binding|GO:0005515|11457943|ISS  product CLE11 (CLAVATA3/ESR-RELATED 11); protein binding / receptor binding  note CLAVATA3/ESR-RELATED 11 (CLE11); FUNCTIONS IN: protein binding, receptor binding; INVOLVED IN: signal transduction; LOCATED IN: apoplast; BEST Arabidopsis thaliana protein match is: CLE13 (CLAVATA3/ESR-RELATED 13); protein binding / receptor binding (TAIR:AT1G73965.1); Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G49005.1p  transcript_id AT1G49005.1  protein_id AT1G49005.1p  transcript_id AT1G49005.1  
At1g49010	chr1:018132714	0.0	W/18132714-18133138,18133259-18133778	AT1G49010.1  CDS  gene_syn F27J15.20  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 6 processes; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT5G08520.1); Has 1409 Blast hits to 1397 proteins in 161 species: Archae - 0; Bacteria - 16; Metazoa - 298; Fungi - 86; Plants - 901; Viruses - 2; Other Eukaryotes - 106 (source: NCBI BLink).  protein_id AT1G49010.1p  transcript_id AT1G49010.1  protein_id AT1G49010.1p  transcript_id AT1G49010.1  
At1g49015	chr1:018134528	0.0	W/18134528-18134577,18134650-18134701,18134731-18135312	AT1G49015.1  CDS  go_process translational initiation|GO:0006413||IEA  go_function RNA binding|GO:0003723||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_component cellular_component|GO:0005575||ND  product eukaryotic translation initiation factor-related  note eukaryotic translation initiation factor-related; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Eukaryotic translation initiation factor 2A, central region (InterPro:IPR013979), Translation initiation factor eIF-3b (InterPro:IPR011400); BEST Arabidopsis thaliana protein match is: TIF3B1 (TRANSLATION INITIATION FACTOR 3B1); nucleic acid binding / translation initiation factor (TAIR:AT5G27640.2); Has 270 Blast hits to 270 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 92; Plants - 34; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT1G49015.1p  transcript_id AT1G49015.1  protein_id AT1G49015.1p  transcript_id AT1G49015.1  
At1g49020	chr1:018135598	0.0	C/18135598-18135669	AT1G49020.1  tRNA  gene_syn 52155.TRNA-ASP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asp (anticodon: GTC)  transcript_id AT1G49020.1  
At1g49030	chr1:018136794	0.0	W/18136794-18137097,18137190-18137261,18137449-18137661,18137761-18137846	AT1G49030.1  CDS  gene_syn F27J15.18, F27J15_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18460.1); Has 470 Blast hits to 469 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 116; Fungi - 30; Plants - 304; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT1G49030.1p  transcript_id AT1G49030.1  protein_id AT1G49030.1p  transcript_id AT1G49030.1  
At1g49032	chr1:018138315	0.0	W/18138315-18138488	AT1G49032.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G49032.1p  transcript_id AT1G49032.1  protein_id AT1G49032.1p  transcript_id AT1G49032.1  
At1g49040	chr1:018148653	0.0	C/18148653-18148826,18148054-18148147,18147613-18147814,18147238-18147379,18146960-18147060,18146778-18146841,18146521-18146634,18146222-18146439,18146051-18146105,18145893-18145967,18145471-18145666,18145032-18145155,18144908-18144962,18144762-18144806,18144499-18144574,18144210-18144283,18144073-18144123,18143667-18143824,18143520-18143567,18142974-18143031,18142777-18142860,18142350-18142608,18142007-18142269	AT1G49040.2  CDS  gene_syn F27J15.17, F27J15_17, SCD1, STOMATAL CYTOKINESIS-DEFECTIVE 1  gene SCD1  function Encodes soluble protein containing N-terminal DENN domain and eight C-terminal WD-40 repeats. Involved in cytokinesis of guard mother cells and leaf epidermal cells. The overall growth and development of mutant plants is severely affected, they are smaller than wt, with defects in seedling development, leaf expansion and flower morphology which renders the mutant conditionally sterile.  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process cytokinesis by cell plate formation|GO:0000911|12874123|IMP  go_process multidimensional cell growth|GO:0009825|12874123|IMP  go_process guard cell differentiation|GO:0010052|12874123|IMP  go_process guard mother cell cytokinesis|GO:0010235|12874123|IMP  go_function protein binding|GO:0005515|12874123|ISS  product SCD1 (STOMATAL CYTOKINESIS-DEFECTIVE 1); protein binding  note STOMATAL CYTOKINESIS-DEFECTIVE 1 (SCD1); FUNCTIONS IN: protein binding; INVOLVED IN: multidimensional cell growth, guard mother cell cytokinesis, guard cell differentiation, cytokinesis by cell plate formation; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: uDENN (InterPro:IPR005113), DENN (InterPro:IPR001194), dDENN (InterPro:IPR005112); BEST Arabidopsis thaliana protein match is: DENN (AEX-3) domain-containing protein (TAIR:AT5G35560.1); Has 1270 Blast hits to 1269 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 937; Fungi - 86; Plants - 52; Viruses - 0; Other Eukaryotes - 195 (source: NCBI BLink).  protein_id AT1G49040.2p  transcript_id AT1G49040.2  protein_id AT1G49040.2p  transcript_id AT1G49040.2  
At1g49040	chr1:018148653	0.0	C/18148653-18148826,18148054-18148147,18147613-18147814,18147238-18147379,18146960-18147060,18146778-18146841,18146521-18146634,18146222-18146439,18146051-18146105,18145893-18145967,18145471-18145666,18145032-18145155,18144908-18144962,18144762-18144806,18144499-18144574,18144210-18144283,18144073-18144123,18143667-18143824,18143520-18143567,18142974-18143031,18142777-18142860,18142350-18142608,18142103-18142269,18141464-18141528,18141214-18141337,18140732-18140913,18140568-18140639,18140148-18140308,18139994-18140035,18139715-18139902,18139419-18139514	AT1G49040.1  CDS  gene_syn F27J15.17, F27J15_17, SCD1, STOMATAL CYTOKINESIS-DEFECTIVE 1  gene SCD1  function Encodes soluble protein containing N-terminal DENN domain and eight C-terminal WD-40 repeats. Involved in cytokinesis of guard mother cells and leaf epidermal cells. The overall growth and development of mutant plants is severely affected, they are smaller than wt, with defects in seedling development, leaf expansion and flower morphology which renders the mutant conditionally sterile.  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process cytokinesis by cell plate formation|GO:0000911|12874123|IMP  go_process multidimensional cell growth|GO:0009825|12874123|IMP  go_process guard cell differentiation|GO:0010052|12874123|IMP  go_process guard mother cell cytokinesis|GO:0010235|12874123|IMP  go_function protein binding|GO:0005515|12874123|ISS  product SCD1 (STOMATAL CYTOKINESIS-DEFECTIVE 1); protein binding  note STOMATAL CYTOKINESIS-DEFECTIVE 1 (SCD1); FUNCTIONS IN: protein binding; INVOLVED IN: multidimensional cell growth, guard mother cell cytokinesis, guard cell differentiation, cytokinesis by cell plate formation; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), uDENN (InterPro:IPR005113), DENN (InterPro:IPR001194), dDENN (InterPro:IPR005112), WD40 repeat, region (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G23430.2); Has 52400 Blast hits to 24048 proteins in 623 species: Archae - 46; Bacteria - 5391; Metazoa - 24042; Fungi - 10230; Plants - 5261; Viruses - 0; Other Eukaryotes - 7430 (source: NCBI BLink).  protein_id AT1G49040.1p  transcript_id AT1G49040.1  protein_id AT1G49040.1p  transcript_id AT1G49040.1  
At1g49050	chr1:018150638	0.0	W/18150638-18151239,18151339-18151462,18151548-18151777,18151873-18152112,18152262-18152415,18152505-18152596,18152696-18152810,18152891-18152963,18153065-18153186	AT1G49050.1  CDS  gene_syn F27J15.15, F27J15_15  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: nucellin protein, putative (TAIR:AT1G77480.1); Has 1514 Blast hits to 1509 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 387; Fungi - 84; Plants - 981; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT1G49050.1p  transcript_id AT1G49050.1  protein_id AT1G49050.1p  transcript_id AT1G49050.1  
At1g49050	chr1:018151161	0.0	W/18151161-18151243,18151339-18151462,18151548-18151777,18151873-18152112,18152262-18152415,18152505-18152596,18152696-18152810,18152891-18152963,18153065-18153186	AT1G49050.2  CDS  gene_syn F27J15.15, F27J15_15  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: nucellin protein, putative (TAIR:AT1G77480.1); Has 1496 Blast hits to 1491 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 391; Fungi - 78; Plants - 976; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT1G49050.2p  transcript_id AT1G49050.2  protein_id AT1G49050.2p  transcript_id AT1G49050.2  
At1g49060	chr1:018154045	0.0	W/18154045-18154459	AT1G49060.1  pseudogenic_transcript  pseudo  gene_syn F27J15.31  note pseudogene, hypothetical protein  
At1g49070	chr1:018155151	0.0	W/18155151-18159680	AT1G49070.1  mRNA_TE_gene  pseudo  gene_syn F27J15.32  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 5.1e-158 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At1g49080	chr1:018159889	0.0	W/18159889-18160464	AT1G49080.1  mRNA_TE_gene  pseudo  gene_syn F27J15.14  note Transposable element gene, pseudogene, hypothetical protein, similar to Antirrhinum majus TNP2 protein gb|AAD17349.1  
At1g49090	chr1:018161320	0.0	W/18161320-18162686	AT1G49090.1  mRNA_TE_gene  pseudo  gene_syn F27J15.34, F27J15_34  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 6.7e-41 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At1g49100	chr1:018170021	0.0	C/18170021-18170105,18169346-18169886,18168715-18169196,18168484-18168628,18168309-18168380,18168137-18168208,18167907-18167978,18167639-18167823,18167334-18167554,18167102-18167228,18166918-18166983,18166638-18166827,18166147-18166555	AT1G49100.1  CDS  gene_syn F27J15.13, F27J15_13  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat protein kinase, putative  note leucine-rich repeat protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT3G21340.1); Has 110597 Blast hits to 88966 proteins in 3398 species: Archae - 42; Bacteria - 7745; Metazoa - 38885; Fungi - 6771; Plants - 41173; Viruses - 419; Other Eukaryotes - 15562 (source: NCBI BLink).  protein_id AT1G49100.1p  transcript_id AT1G49100.1  protein_id AT1G49100.1p  transcript_id AT1G49100.1  
At1g49110	chr1:018171713	0.0	W/18171713-18172246	AT1G49110.1  CDS  gene_syn F27J15.12, F27J15_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G49110.1p  transcript_id AT1G49110.1  protein_id AT1G49110.1p  transcript_id AT1G49110.1  
At1g49120	chr1:018173427	0.0	W/18173427-18174416	AT1G49120.1  CDS  gene_syn F27J15.11, F27J15_11  function encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: CRF3 (CYTOKININ RESPONSE FACTOR 3); DNA binding / transcription factor (TAIR:AT5G53290.1); Has 2873 Blast hits to 2867 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2866; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G49120.1p  transcript_id AT1G49120.1  protein_id AT1G49120.1p  transcript_id AT1G49120.1  
At1g49130	chr1:018175032	0.0	C/18175032-18175811,18174741-18174920	AT1G49130.2  CDS  gene_syn F27J15.10, F27J15_10  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (B-box type) family protein  note zinc finger (B-box type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: zinc finger (B-box type) family protein (TAIR:AT1G73870.1); Has 1878 Blast hits to 1336 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1794; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT1G49130.2p  transcript_id AT1G49130.2  protein_id AT1G49130.2p  transcript_id AT1G49130.2  
At1g49130	chr1:018175903	0.0	C/18175903-18175936,18175032-18175798,18174741-18174920	AT1G49130.1  CDS  gene_syn F27J15.10, F27J15_10  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (B-box type) family protein  note zinc finger (B-box type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: zinc finger (B-box type) family protein (TAIR:AT1G73870.1); Has 1875 Blast hits to 1333 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1794; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).  protein_id AT1G49130.1p  transcript_id AT1G49130.1  protein_id AT1G49130.1p  transcript_id AT1G49130.1  
At1g49140	chr1:018177981	0.0	C/18177981-18178269,18177696-18177730	AT1G49140.1  CDS  gene_syn F27J15.9, F27J15_9  go_component mitochondrion|GO:0005739|12837548|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial membrane|GO:0031966|16407270|IDA  go_component respiratory chain complex I|GO:0045271|16407270|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process photorespiration|GO:0009853|16407270|TAS  product NADH-ubiquinone oxidoreductase-related  note NADH-ubiquinone oxidoreductase-related; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, respiratory chain complex I; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: NADH-ubiquinone oxidoreductase-related (TAIR:AT3G18410.2); Has 96 Blast hits to 96 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 54; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G49140.1p  transcript_id AT1G49140.1  protein_id AT1G49140.1p  transcript_id AT1G49140.1  
At1g49150	chr1:018178577	0.0	W/18178577-18179023	AT1G49150.1  CDS  gene_syn F27J15.8, F27J15_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, cotyledon, flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G49150.1p  transcript_id AT1G49150.1  protein_id AT1G49150.1p  transcript_id AT1G49150.1  
At1g49160	chr1:018181781	0.0	C/18181781-18181851,18181244-18181471,18180923-18181143,18180669-18180826,18180133-18180553,18179473-18179993	AT1G49160.1  CDS  gene_syn F27J15.7, F27J15_7, WNK7  gene WNK7  function Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468|12506983|TAS  go_function protein kinase activity|GO:0004672|12506983|TAS  go_function kinase activity|GO:0016301||ISS  product WNK7; kinase/ protein kinase  note WNK7; FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: WNK6 (WITH NO K (=LYSINE) 6); kinase/ protein kinase (TAIR:AT3G18750.1); Has 77691 Blast hits to 77050 proteins in 2302 species: Archae - 36; Bacteria - 5729; Metazoa - 33818; Fungi - 6738; Plants - 16379; Viruses - 392; Other Eukaryotes - 14599 (source: NCBI BLink).  protein_id AT1G49160.1p  transcript_id AT1G49160.1  protein_id AT1G49160.1p  transcript_id AT1G49160.1  
At1g49160	chr1:018181781	0.0	C/18181781-18181867,18181613-18181650,18181244-18181471,18180923-18181143,18180669-18180826,18180133-18180553,18179473-18179993	AT1G49160.2  CDS  gene_syn F27J15.7, F27J15_7, WNK7  gene WNK7  function Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its  go_process protein amino acid phosphorylation|GO:0006468|12506983|TAS  go_function protein kinase activity|GO:0004672|12506983|TAS  go_function kinase activity|GO:0016301||ISS  product WNK7; kinase/ protein kinase  note WNK7; FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: WNK6 (WITH NO K (=LYSINE) 6); kinase/ protein kinase (TAIR:AT3G18750.1); Has 79257 Blast hits to 78500 proteins in 2305 species: Archae - 36; Bacteria - 5956; Metazoa - 34388; Fungi - 6962; Plants - 16626; Viruses - 386; Other Eukaryotes - 14903 (source: NCBI BLink).  protein_id AT1G49160.2p  transcript_id AT1G49160.2  protein_id AT1G49160.2p  transcript_id AT1G49160.2  
At1g49170	chr1:018184275	0.0	C/18184275-18184434,18184100-18184188,18183561-18183692	AT1G49170.1  CDS  gene_syn F27J15.6, F27J15_6  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF167 (InterPro:IPR003746); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G63440.3); Has 386 Blast hits to 386 proteins in 178 species: Archae - 12; Bacteria - 186; Metazoa - 85; Fungi - 19; Plants - 34; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT1G49170.1p  transcript_id AT1G49170.1  protein_id AT1G49170.1p  transcript_id AT1G49170.1  
At1g49180	chr1:018187223	0.0	C/18187223-18187444,18187025-18187142,18186885-18186943,18186746-18186810,18186581-18186674,18186425-18186505,18186228-18186339,18185825-18185912,18185589-18185655,18185118-18185237,18184840-18185040	AT1G49180.1  CDS  gene_syn F27J15.5, F27J15_5  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G37840.1); Has 95086 Blast hits to 93483 proteins in 3039 species: Archae - 69; Bacteria - 8399; Metazoa - 40703; Fungi - 8597; Plants - 18649; Viruses - 499; Other Eukaryotes - 18170 (source: NCBI BLink).  protein_id AT1G49180.1p  transcript_id AT1G49180.1  protein_id AT1G49180.1p  transcript_id AT1G49180.1  
At1g49190	chr1:018191342	0.0	W/18191342-18191519,18191614-18191766,18191868-18192860,18192969-18193051,18193179-18193598	AT1G49190.1  CDS  gene_syn ARABIDOPSIS RESPONSE REGULATOR 19, ARR19, F27J15.4, F27J15_4  gene ARR19  function member of Response Regulator: B- Type  go_component nucleus|GO:0005634|15173562|IDA  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function two-component response regulator activity|GO:0000156|11574878|ISS  go_function two-component response regulator activity|GO:0000156|12068096|ISS  go_function two-component response regulator activity|GO:0000156||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ARR19 (ARABIDOPSIS RESPONSE REGULATOR 19); transcription factor/ two-component response regulator  note ARABIDOPSIS RESPONSE REGULATOR 19 (ARR19); FUNCTIONS IN: transcription factor activity, two-component response regulator activity; INVOLVED IN: cytokinin mediated signaling, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: trichome; CONTAINS InterPro DOMAIN/s: Response regulator, plant B-type (InterPro:IPR017053), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), CheY-like (InterPro:IPR011006), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Signal transduction response regulator, receiver region (InterPro:IPR001789), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ARR20 (ARABIDOPSIS RESPONSE REGULATOR 20); transcription factor/ two-component response regulator (TAIR:AT3G62670.1); Has 25736 Blast hits to 25494 proteins in 1511 species: Archae - 112; Bacteria - 21005; Metazoa - 12; Fungi - 69; Plants - 1433; Viruses - 0; Other Eukaryotes - 3105 (source: NCBI BLink).  protein_id AT1G49190.1p  transcript_id AT1G49190.1  protein_id AT1G49190.1p  transcript_id AT1G49190.1  
At1g49200	chr1:018198298	0.0	W/18198298-18198978	AT1G49200.1  CDS  gene_syn F27J15.33  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G49210.1); Has 5860 Blast hits to 5841 proteins in 212 species: Archae - 0; Bacteria - 0; Metazoa - 1984; Fungi - 368; Plants - 2596; Viruses - 40; Other Eukaryotes - 872 (source: NCBI BLink).  protein_id AT1G49200.1p  transcript_id AT1G49200.1  protein_id AT1G49200.1p  transcript_id AT1G49200.1  
At1g49210	chr1:018201994	0.0	W/18201994-18202671	AT1G49210.1  CDS  gene_syn F27J15.3, F27J15_3  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G49200.1); Has 5874 Blast hits to 5856 proteins in 209 species: Archae - 0; Bacteria - 0; Metazoa - 2008; Fungi - 350; Plants - 2603; Viruses - 38; Other Eukaryotes - 875 (source: NCBI BLink).  protein_id AT1G49210.1p  transcript_id AT1G49210.1  protein_id AT1G49210.1p  transcript_id AT1G49210.1  
At1g49220	chr1:018205946	0.0	W/18205946-18206701	AT1G49220.1  CDS  gene_syn F27J15.37, F27J15_37  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G49210.1); Has 6063 Blast hits to 6045 proteins in 215 species: Archae - 0; Bacteria - 0; Metazoa - 2032; Fungi - 375; Plants - 2649; Viruses - 45; Other Eukaryotes - 962 (source: NCBI BLink).  protein_id AT1G49220.1p  transcript_id AT1G49220.1  protein_id AT1G49220.1p  transcript_id AT1G49220.1  
At1g49230	chr1:018209320	0.0	W/18209320-18209979	AT1G49230.1  CDS  gene_syn F27J15.2, F27J15_2  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G49200.1); Has 6176 Blast hits to 6158 proteins in 215 species: Archae - 0; Bacteria - 0; Metazoa - 2121; Fungi - 417; Plants - 2675; Viruses - 39; Other Eukaryotes - 924 (source: NCBI BLink).  protein_id AT1G49230.1p  transcript_id AT1G49230.1  protein_id AT1G49230.1p  transcript_id AT1G49230.1  
At1g49240	chr1:018216539	0.0	W/18216539-18216598,18216671-18217064,18217161-18217774,18217882-18217947	AT1G49240.1  CDS  gene_syn ACT8, ACTIN 8, F27J15.1, F27J15_1  gene ACT8  function Member of a subclass of actins composed of ACT2 and ACT8. Its mRNA is strongly expressed in strongly expressed in leaves, roots, stems, flowers, pollen, and siliques. However, protein expression, assayed by a ACT8:GUS fusion reporter, is very low in pollen.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function copper ion binding|GO:0005507|16526091|IDA  go_process cytoskeleton organization|GO:0007010|8758981|TAS  go_process root hair cell tip growth|GO:0048768|19304937|IMP  go_function structural constituent of cytoskeleton|GO:0005200||ISS  product ACT8 (ACTIN 8); copper ion binding / structural constituent of cytoskeleton  note ACTIN 8 (ACT8); FUNCTIONS IN: copper ion binding, structural constituent of cytoskeleton; INVOLVED IN: response to salt stress, root hair cell tip growth, cytoskeleton organization; LOCATED IN: plasma membrane, chloroplast, vacuole; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: ACT2 (ACTIN 2); structural constituent of cytoskeleton (TAIR:AT3G18780.2); Has 11072 Blast hits to 10782 proteins in 2291 species: Archae - 6; Bacteria - 3; Metazoa - 4916; Fungi - 2954; Plants - 1095; Viruses - 2; Other Eukaryotes - 2096 (source: NCBI BLink).  protein_id AT1G49240.1p  transcript_id AT1G49240.1  protein_id AT1G49240.1p  transcript_id AT1G49240.1  
At1g49245	chr1:018218861	0.0	W/18218861-18219085	AT1G49245.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); Has 8 Blast hits to 8 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G49245.1p  transcript_id AT1G49245.1  protein_id AT1G49245.1p  transcript_id AT1G49245.1  
At1g49250	chr1:018220533	0.0	W/18220533-18220701,18220791-18221131,18221380-18221481,18221556-18221672,18221767-18221997,18222103-18222197,18222289-18222376,18222601-18222726,18222824-18222936,18223013-18223114,18223202-18223263,18223352-18223423,18223513-18223586,18223679-18223735,18223835-18223912,18224013-18224090,18224188-18224256	AT1G49250.1  CDS  gene_syn F13F21.31, F13F21_31  go_process DNA replication|GO:0006260||IEA  go_process DNA repair|GO:0006281||IEA  go_process DNA recombination|GO:0006310||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA ligase (ATP) activity|GO:0003910||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function DNA ligase (ATP) activity|GO:0003910||ISS  go_function ATP binding|GO:0005524||ISS  product ATP dependent DNA ligase family protein  note ATP dependent DNA ligase family protein; FUNCTIONS IN: DNA binding, DNA ligase (ATP) activity, ATP binding; INVOLVED IN: DNA repair, DNA recombination, DNA replication; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA ligase, N-terminal (InterPro:IPR012308), ATP dependent DNA ligase, central (InterPro:IPR012310), ATP dependent DNA ligase, C-terminal (InterPro:IPR012309), ATP-dependent DNA ligase, conserved site (InterPro:IPR016059), ATP-dependent DNA ligase (InterPro:IPR000977); BEST Arabidopsis thaliana protein match is: ATLIG1 (ARABIDOPSIS THALIANA DNA LIGASE 1); ATP binding / DNA binding / DNA ligase (ATP) (TAIR:AT1G08130.1); Has 2361 Blast hits to 2336 proteins in 590 species: Archae - 189; Bacteria - 802; Metazoa - 310; Fungi - 275; Plants - 46; Viruses - 152; Other Eukaryotes - 587 (source: NCBI BLink).  protein_id AT1G49250.1p  transcript_id AT1G49250.1  protein_id AT1G49250.1p  transcript_id AT1G49250.1  
At1g49260	chr1:018226328	0.0	W/18226328-18226777	AT1G49260.1  CDS  gene_syn F13F21.29, F13F21_29  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: MSL5 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 5) (TAIR:AT3G14810.1); Has 63 Blast hits to 63 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G49260.1p  transcript_id AT1G49260.1  protein_id AT1G49260.1p  transcript_id AT1G49260.1  
At1g49270	chr1:018229561	0.0	C/18229561-18230227,18228681-18229283,18228498-18228584,18228338-18228408,18228016-18228237,18227764-18227925,18227334-18227621	AT1G49270.1  CDS  gene_syn F13F21.28, F13F21_28  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function ATP binding|GO:0005524||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: male gametophyte, sepal, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G18810.1); Has 187475 Blast hits to 126736 proteins in 3781 species: Archae - 170; Bacteria - 32598; Metazoa - 70893; Fungi - 19932; Plants - 28490; Viruses - 2787; Other Eukaryotes - 32605 (source: NCBI BLink).  protein_id AT1G49270.1p  transcript_id AT1G49270.1  protein_id AT1G49270.1p  transcript_id AT1G49270.1  
At1g49280	chr1:018230479	0.0	C/18230479-18230552	AT1G49280.1  tRNA  gene_syn 51473.TRNA-THR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Thr (anticodon: AGT)  transcript_id AT1G49280.1  
At1g49290	chr1:018232608	0.0	C/18232608-18233624	AT1G49290.1  CDS  gene_syn F13F21.27, F13F21_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13620.1); Has 45 Blast hits to 43 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G49290.1p  transcript_id AT1G49290.1  protein_id AT1G49290.1p  transcript_id AT1G49290.1  
At1g49300	chr1:018234842	0.0	W/18234842-18234894,18235537-18235563,18235732-18235831,18236237-18236383,18236472-18236552,18236640-18236785,18236902-18236968	AT1G49300.1  CDS  gene_syn ARABIDOPSIS RAB GTPASE HOMOLOG 7, ARABIDOPSIS RAB GTPASE HOMOLOG G3E, ATRAB7, ATRABG3E, F13F21.26, F13F21_26, RAB GTPASE HOMOLOG G3E, RABG3E  gene RABG3E  function encodes a small GTPase involved in membrane trafficking. Gene expression is induced by hydrogen peroxide and lines. Lines overexpressing the gene are more tolerant to high salt and hyperosmotic conditions.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function GTP binding|GO:0005525||IEA  go_process response to oxidative stress|GO:0006979|14657401|IEP  go_process response to oxidative stress|GO:0006979|14657401|IMP  go_process response to salt stress|GO:0009651|14657401|IMP  go_function GTP binding|GO:0005525||ISS  product RABG3E (RAB GTPASE HOMOLOG G3E); GTP binding  note RAB GTPASE HOMOLOG G3E (RABG3E); FUNCTIONS IN: GTP binding; INVOLVED IN: response to oxidative stress, response to salt stress; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F); GTP binding (TAIR:AT3G18820.1); Has 21171 Blast hits to 21141 proteins in 624 species: Archae - 27; Bacteria - 131; Metazoa - 11490; Fungi - 2778; Plants - 1836; Viruses - 19; Other Eukaryotes - 4890 (source: NCBI BLink).  protein_id AT1G49300.1p  transcript_id AT1G49300.1  protein_id AT1G49300.1p  transcript_id AT1G49300.1  
At1g49300	chr1:018234842	0.0	W/18234842-18234894,18235537-18235563,18235732-18235831,18236237-18236383,18236472-18236552,18236640-18236785,18236902-18236968	AT1G49300.2  CDS  gene_syn ARABIDOPSIS RAB GTPASE HOMOLOG 7, ARABIDOPSIS RAB GTPASE HOMOLOG G3E, ATRAB7, ATRABG3E, F13F21.26, F13F21_26, RAB GTPASE HOMOLOG G3E, RABG3E  gene RABG3E  function encodes a small GTPase involved in membrane trafficking. Gene expression is induced by hydrogen peroxide and lines. Lines overexpressing the gene are more tolerant to high salt and hyperosmotic conditions.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function GTP binding|GO:0005525||IEA  go_process response to oxidative stress|GO:0006979|14657401|IEP  go_process response to oxidative stress|GO:0006979|14657401|IMP  go_process response to salt stress|GO:0009651|14657401|IMP  go_function GTP binding|GO:0005525||ISS  product RABG3E (RAB GTPASE HOMOLOG G3E); GTP binding  note RAB GTPASE HOMOLOG G3E (RABG3E); FUNCTIONS IN: GTP binding; INVOLVED IN: response to oxidative stress, response to salt stress; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F); GTP binding (TAIR:AT3G18820.1); Has 21171 Blast hits to 21141 proteins in 624 species: Archae - 27; Bacteria - 131; Metazoa - 11490; Fungi - 2778; Plants - 1836; Viruses - 19; Other Eukaryotes - 4890 (source: NCBI BLink).  protein_id AT1G49300.2p  transcript_id AT1G49300.2  protein_id AT1G49300.2p  transcript_id AT1G49300.2  
At1g49310	chr1:018238269	0.0	C/18238269-18238325,18237997-18238188	AT1G49310.1  CDS  gene_syn F13F21.30, F13F21_30  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G49310.1p  transcript_id AT1G49310.1  protein_id AT1G49310.1p  transcript_id AT1G49310.1  
At1g49320	chr1:018246441	0.0	W/18246441-18246497,18247032-18247817	AT1G49320.1  CDS  gene_syn F13F21.25, F13F21_25  go_component endomembrane system|GO:0012505||IEA  go_function molecular_function|GO:0003674||ND  product BURP domain-containing protein  note BURP domain-containing protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: BURP (InterPro:IPR004873); BEST Arabidopsis thaliana protein match is: RD22; nutrient reservoir (TAIR:AT5G25610.1); Has 306 Blast hits to 304 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 306; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G49320.1p  transcript_id AT1G49320.1  protein_id AT1G49320.1p  transcript_id AT1G49320.1  
At1g49330	chr1:018250043	0.0	W/18250043-18251038	AT1G49330.1  CDS  gene_syn F13F21.24, F13F21_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16190.1); Has 840 Blast hits to 686 proteins in 130 species: Archae - 0; Bacteria - 47; Metazoa - 222; Fungi - 69; Plants - 342; Viruses - 66; Other Eukaryotes - 94 (source: NCBI BLink).  protein_id AT1G49330.1p  transcript_id AT1G49330.1  protein_id AT1G49330.1p  transcript_id AT1G49330.1  
At1g49340	chr1:018252355	0.0	W/18252355-18253353,18253528-18253869,18254042-18254188,18254290-18254457,18254620-18254778,18254873-18255000,18255332-18255641,18255779-18255947,18256041-18256258,18256433-18256591,18257256-18257438,18257840-18258367,18258477-18258836,18259100-18259314,18259729-18259909,18259997-18260133,18260232-18260385,18260751-18261017,18261545-18261622,18261717-18261761,18262239-18262411,18262488-18262683,18262914-18263054,18263182-18263390,18263547-18263967	AT1G49340.1  CDS  gene_syn ATPI4K ALPHA  gene ATPI4K ALPHA  function Encodes a phosphatidylinositol 4-kinase that is expressed in inflorescences and shoots.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468|9712908|IDA  go_function inositol or phosphatidylinositol kinase activity|GO:0004428||ISS  go_function 1-phosphatidylinositol 4-kinase activity|GO:0004430|9712908|IDA  product ATPI4K ALPHA; 1-phosphatidylinositol 4-kinase/ inositol or phosphatidylinositol kinase  note ATPI4K ALPHA; FUNCTIONS IN: 1-phosphatidylinositol 4-kinase activity, inositol or phosphatidylinositol kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: shoot, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3- and 4-kinase, catalytic (InterPro:IPR000403), Phosphoinositide 3-kinase accessory region PIK (InterPro:IPR001263), Phosphatidylinositol Kinase (InterPro:IPR015433), Armadillo-type fold (InterPro:IPR016024), Phosphatidylinositol 3- and 4-kinase, conserved site (InterPro:IPR018936), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: phosphatidylinositol 4-kinase, putative (TAIR:AT1G51040.1); Has 1846 Blast hits to 1743 proteins in 188 species: Archae - 0; Bacteria - 0; Metazoa - 973; Fungi - 324; Plants - 105; Viruses - 4; Other Eukaryotes - 440 (source: NCBI BLink).  protein_id AT1G49340.1p  transcript_id AT1G49340.1  protein_id AT1G49340.1p  transcript_id AT1G49340.1  
At1g49340	chr1:018252355	0.0	W/18252355-18253353,18253528-18253869,18254042-18254188,18254290-18254457,18254620-18254778,18254873-18255000,18255332-18255641,18255779-18255947,18256041-18256258,18256433-18256591,18257256-18257438,18257840-18258367,18258477-18258836,18259100-18259314,18259729-18259909,18259997-18260133,18260232-18260385,18260751-18261017,18261545-18261622,18261717-18261761,18262239-18262411,18262488-18262683,18262914-18263054,18263182-18263390,18263547-18263967	AT1G49340.2  CDS  gene_syn ATPI4K ALPHA  gene ATPI4K ALPHA  function Encodes a phosphatidylinositol 4-kinase that is expressed in inflorescences and shoots.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468|9712908|IDA  go_function inositol or phosphatidylinositol kinase activity|GO:0004428||ISS  go_function 1-phosphatidylinositol 4-kinase activity|GO:0004430|9712908|IDA  product ATPI4K ALPHA; 1-phosphatidylinositol 4-kinase/ inositol or phosphatidylinositol kinase  note ATPI4K ALPHA; FUNCTIONS IN: 1-phosphatidylinositol 4-kinase activity, inositol or phosphatidylinositol kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: shoot, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Phosphoinositide 3-kinase accessory region PIK (InterPro:IPR001263), Phosphatidylinositol 3- and 4-kinase, catalytic (InterPro:IPR000403), Phosphatidylinositol Kinase (InterPro:IPR015433), Armadillo-type fold (InterPro:IPR016024), Phosphatidylinositol 3- and 4-kinase, conserved site (InterPro:IPR018936), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: phosphatidylinositol 4-kinase, putative (TAIR:AT1G51040.1); Has 1846 Blast hits to 1743 proteins in 188 species: Archae - 0; Bacteria - 0; Metazoa - 973; Fungi - 324; Plants - 105; Viruses - 4; Other Eukaryotes - 440 (source: NCBI BLink).  protein_id AT1G49340.2p  transcript_id AT1G49340.2  protein_id AT1G49340.2p  transcript_id AT1G49340.2  
At1g49350	chr1:018265070	0.0	W/18265070-18265159,18265390-18265492,18265600-18265638,18265762-18265859,18265970-18266084,18266163-18266245,18266332-18266878,18266973-18267034	AT1G49350.1  CDS  gene_syn F13F21.22, F13F21_22  go_process D-ribose metabolic process|GO:0006014||IEA  go_function ribokinase activity|GO:0004747||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product pfkB-type carbohydrate kinase family protein  note pfkB-type carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); Has 1546 Blast hits to 1545 proteins in 552 species: Archae - 0; Bacteria - 1200; Metazoa - 89; Fungi - 42; Plants - 30; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink).  protein_id AT1G49350.1p  transcript_id AT1G49350.1  protein_id AT1G49350.1p  transcript_id AT1G49350.1  
At1g49360	chr1:018269362	0.0	C/18269362-18269423,18269102-18269170,18268812-18268880,18268662-18268715,18267338-18268529	AT1G49360.1  CDS  gene_syn F13F21.21, F13F21_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G57790.1); Has 208 Blast hits to 208 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 208; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G49360.1p  transcript_id AT1G49360.1  protein_id AT1G49360.1p  transcript_id AT1G49360.1  
At1g49370	chr1:018275050	0.0	C/18275050-18276477	AT1G49370.1  pseudogenic_transcript  pseudo  gene_syn F13F21.20, F13F21_20  note pseudogene, similar to OSJNBa0072F16.8, blastp match of 42% identity and 6.6e-73 P-value to GP|21739229|emb|CAD40984.1||AL606460 OSJNBa0072F16.8 {Oryza sativa (japonica cultivar-group)}  
At1g49380	chr1:018276794	0.0	W/18276794-18277175,18277256-18277475,18277555-18277666,18277765-18278037,18278146-18278411,18278563-18278719,18278820-18278903,18279055-18279204	AT1G49380.1  CDS  gene_syn F13F21.19, F13F21_19  go_component chloroplast|GO:0009507||IEA  go_process cytochrome complex assembly|GO:0017004||ISS  go_function molecular_function|GO:0003674||ND  product cytochrome c biogenesis protein family  note cytochrome c biogenesis protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cytochrome complex assembly; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ResB-like (InterPro:IPR007816); Has 930 Blast hits to 928 proteins in 301 species: Archae - 0; Bacteria - 569; Metazoa - 2; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 335 (source: NCBI BLink).  protein_id AT1G49380.1p  transcript_id AT1G49380.1  protein_id AT1G49380.1p  transcript_id AT1G49380.1  
At1g49390	chr1:018279600	0.0	W/18279600-18279833,18279907-18280154,18280226-18280553,18280637-18280873	AT1G49390.1  CDS  gene_syn F13F21.18, F13F21_18  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process flavonoid biosynthetic process|GO:0009813||ISS  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT5G20400.1); Has 5696 Blast hits to 5669 proteins in 660 species: Archae - 0; Bacteria - 657; Metazoa - 120; Fungi - 609; Plants - 3061; Viruses - 0; Other Eukaryotes - 1249 (source: NCBI BLink).  protein_id AT1G49390.1p  transcript_id AT1G49390.1  protein_id AT1G49390.1p  transcript_id AT1G49390.1  
At1g49400	chr1:018283156	0.0	W/18283156-18283317,18283455-18283643	AT1G49400.1  CDS  gene_syn F13F21.17, F13F21_17, emb1129, embryo defective 1129  gene emb1129  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component cytosolic small ribosomal subunit|GO:0022627||ISS  go_process translation|GO:0006412||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function structural constituent of ribosome|GO:0003735||ISS  product emb1129 (embryo defective 1129); structural constituent of ribosome  note embryo defective 1129 (emb1129); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: embryonic development ending in seed dormancy, translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S17 (InterPro:IPR000266); BEST Arabidopsis thaliana protein match is: ribosomal protein S17 family protein (TAIR:AT3G18880.1); Has 5009 Blast hits to 5009 proteins in 1493 species: Archae - 95; Bacteria - 2929; Metazoa - 38; Fungi - 60; Plants - 74; Viruses - 0; Other Eukaryotes - 1813 (source: NCBI BLink).  protein_id AT1G49400.1p  transcript_id AT1G49400.1  protein_id AT1G49400.1p  transcript_id AT1G49400.1  
At1g49405	chr1:018284817	0.0	C/18284817-18284947,18284612-18284744,18284335-18284529	AT1G49405.1  CDS  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane protein, putative  note integral membrane protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50810.1); Has 97 Blast hits to 97 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G49405.1p  transcript_id AT1G49405.1  protein_id AT1G49405.1p  transcript_id AT1G49405.1  
At1g49410	chr1:018286738	0.0	C/18286738-18286902	AT1G49410.1  CDS  gene_syn TOM6, translocase of the outer mitochondrial membrane 6  gene TOM6  go_component mitochondrion|GO:0005739|14730085|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product TOM6 (translocase of the outer mitochondrial membrane 6)  note translocase of the outer mitochondrial membrane 6 (TOM6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 20 Blast hits to 20 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G49410.1p  transcript_id AT1G49410.1  protein_id AT1G49410.1p  transcript_id AT1G49410.1  
At1g49420	chr1:018288627	0.0	C/18288627-18288650,18288425-18288509,18287859-18288319	AT1G49420.1  CDS  gene_syn F13F21.15, F13F21_15  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product metal ion binding  note metal ion binding; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: metal ion binding (TAIR:AT4G16380.1); Has 85 Blast hits to 83 proteins in 26 species: Archae - 2; Bacteria - 15; Metazoa - 7; Fungi - 11; Plants - 47; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G49420.1p  transcript_id AT1G49420.1  protein_id AT1G49420.1p  transcript_id AT1G49420.1  
At1g49430	chr1:018291188	0.0	W/18291188-18291342,18291500-18291563,18291683-18291772,18291885-18291941,18292087-18292135,18292266-18292342,18292462-18292501,18292594-18292688,18292822-18292989,18293074-18293184,18293273-18293360,18293451-18293517,18293601-18293676,18293839-18293956,18294037-18294285,18294683-18294822,18294919-18295104,18295191-18295310,18295594-18295641	AT1G49430.1  CDS  gene_syn F13F21.14, F13F21_14, LACS2, LATERAL ROOT DEVELOPMENT 2, LONG-CHAIN ACYL-COA SYNTHETASE 2, LRD2  gene LACS2  function Encodes a long chain acyl-CoA synthetase that catalyzes the synthesis of omega-hydroxy fatty acyl-CoA intermediates in the pathway to cutin synthesis. Required for repression of lateral root formation.  go_component cellular_component|GO:0005575||ND  go_process fatty acid biosynthetic process|GO:0006633|9106514|TAS  go_process cutin biosynthetic process|GO:0010143|14973169|IMP  go_process cutin biosynthetic process|GO:0010143|18952782|IMP  go_process lateral root formation|GO:0010311|18952782|IMP  go_process defense response to fungus|GO:0050832|17396154|IMP  go_function long-chain-fatty-acid-CoA ligase activity|GO:0004467|14973169|IDA  product LACS2 (LONG-CHAIN ACYL-COA SYNTHETASE 2); long-chain-fatty-acid-CoA ligase  note LONG-CHAIN ACYL-COA SYNTHETASE 2 (LACS2); FUNCTIONS IN: long-chain-fatty-acid-CoA ligase activity; INVOLVED IN: defense response to fungus, lateral root formation, cutin biosynthetic process, fatty acid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative (TAIR:AT1G64400.1); Has 35248 Blast hits to 33635 proteins in 1932 species: Archae - 448; Bacteria - 18748; Metazoa - 2081; Fungi - 1322; Plants - 1024; Viruses - 1; Other Eukaryotes - 11624 (source: NCBI BLink).  protein_id AT1G49430.1p  transcript_id AT1G49430.1  protein_id AT1G49430.1p  transcript_id AT1G49430.1  
At1g49435	chr1:018299814	0.0	C/18299814-18299862,18299494-18299660	AT1G49435.1  CDS  gene_syn LCR16, Low-molecular-weight cysteine-rich 16  gene LCR16  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR16 (Low-molecular-weight cysteine-rich 16)  note Low-molecular-weight cysteine-rich 16 (LCR16); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); BEST Arabidopsis thaliana protein match is: LCR30 (Low-molecular-weight cysteine-rich 30) (TAIR:AT3G43505.1); Has 17 Blast hits to 17 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G49435.1p  transcript_id AT1G49435.1  protein_id AT1G49435.1p  transcript_id AT1G49435.1  
At1g49440	chr1:018302711	0.0	W/18302711-18304784	AT1G49440.1  mRNA_TE_gene  pseudo  gene_syn F13F21.32  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 3.6e-05 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At1g49450	chr1:018305684	0.0	W/18305684-18307099	AT1G49450.1  CDS  gene_syn F13F21.11, F13F21_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G18950.1); Has 23681 Blast hits to 12930 proteins in 469 species: Archae - 20; Bacteria - 3191; Metazoa - 10236; Fungi - 4794; Plants - 2076; Viruses - 0; Other Eukaryotes - 3364 (source: NCBI BLink).  protein_id AT1G49450.1p  transcript_id AT1G49450.1  protein_id AT1G49450.1p  transcript_id AT1G49450.1  
At1g49460	chr1:018308903	0.0	W/18308903-18308939	AT1G49460.1  tRNA  gene_syn 51473.TRNA-TYR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G49460.1  
At1g49470	chr1:018310554	0.0	W/18310554-18311462	AT1G49470.1  CDS  gene_syn F13F21.10, F13F21_10  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55230.1); Has 248 Blast hits to 245 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G49470.1p  transcript_id AT1G49470.1  protein_id AT1G49470.1p  transcript_id AT1G49470.1  
At1g49475	chr1:018312983	0.0	W/18312983-18313126,18313227-18313650,18313744-18313748	AT1G49475.1  CDS  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product DNA binding / transcription factor  note DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT3G18960.1); Has 204 Blast hits to 185 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 204; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G49475.1p  transcript_id AT1G49475.1  protein_id AT1G49475.1p  transcript_id AT1G49475.1  
At1g49480	chr1:018315229	0.0	C/18315229-18315460,18314944-18315143,18314596-18314844	AT1G49480.1  CDS  gene_syn F13F21.8, F13F21_8, RTV1, related to vernalization1 1  gene RTV1  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product RTV1 (related to vernalization1 1); DNA binding / transcription factor  note related to vernalization1 1 (RTV1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: VRN1 (REDUCED VERNALIZATION RESPONSE 1); transcription repressor (TAIR:AT3G18990.1); Has 155 Blast hits to 144 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G49480.1p  transcript_id AT1G49480.1  protein_id AT1G49480.1p  transcript_id AT1G49480.1  
At1g49490	chr1:018317563	0.0	C/18317563-18320106	AT1G49490.1  CDS  gene_syn F13F21.7, F13F21_7  go_component endomembrane system|GO:0012505||IEA  go_function structural constituent of cell wall|GO:0005199|12644681|ISS  go_function protein binding|GO:0005515|12644681|ISS  product leucine-rich repeat family protein / extensin family protein  note leucine-rich repeat family protein / extensin family protein; FUNCTIONS IN: structural constituent of cell wall, protein binding; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / extensin family protein (TAIR:AT3G19020.1); Has 390787 Blast hits to 128983 proteins in 2938 species: Archae - 1055; Bacteria - 66640; Metazoa - 144272; Fungi - 55015; Plants - 58287; Viruses - 9313; Other Eukaryotes - 56205 (source: NCBI BLink).  protein_id AT1G49490.1p  transcript_id AT1G49490.1  protein_id AT1G49490.1p  transcript_id AT1G49490.1  
At1g49500	chr1:018321988	0.0	C/18321988-18322179	AT1G49500.1  CDS  gene_syn F13F21.6, F13F21_6  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19030.1); Has 18 Blast hits to 18 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G49500.1p  transcript_id AT1G49500.1  protein_id AT1G49500.1p  transcript_id AT1G49500.1  
At1g49510	chr1:018327026	0.0	W/18327026-18327100,18327417-18327848,18327932-18328147	AT1G49510.1  CDS  gene_syn F13F21.5, F13F21_5, emb1273, embryo defective 1273  gene emb1273  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product emb1273 (embryo defective 1273)  note embryo defective 1273 (emb1273); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 11 Blast hits to 11 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G49510.1p  transcript_id AT1G49510.1  protein_id AT1G49510.1p  transcript_id AT1G49510.1  
At1g49520	chr1:018329736	0.0	W/18329736-18330007,18330307-18330409,18330499-18330673,18330766-18330922,18331011-18331125,18331214-18331391,18331491-18331550,18331633-18331691	AT1G49520.1  CDS  gene_syn F13F21.4, F13F21_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SWIB complex BAF60b domain-containing protein  note SWIB complex BAF60b domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 (InterPro:IPR003121), DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: SWIB complex BAF60b domain-containing protein (TAIR:AT3G19080.1); Has 2705 Blast hits to 1659 proteins in 214 species: Archae - 0; Bacteria - 274; Metazoa - 896; Fungi - 325; Plants - 386; Viruses - 17; Other Eukaryotes - 807 (source: NCBI BLink).  protein_id AT1G49520.1p  transcript_id AT1G49520.1  protein_id AT1G49520.1p  transcript_id AT1G49520.1  
At1g49530	chr1:018332529	0.0	W/18332529-18333539	AT1G49530.1  CDS  gene_syn F14J22.23, GGPS6, geranylgeranyl pyrophosphate synthase 6  gene GGPS6  function encodes a mitochondria-targeted geranylgeranyl pyrophosphate synthase  go_component mitochondrion|GO:0005739|10759500|IDA  go_process isoprenoid biosynthetic process|GO:0008299|9349257|TAS  go_process isoprenoid biosynthetic process|GO:0008299||ISS  go_function farnesyltranstransferase activity|GO:0004311|9349257|IDA  go_function farnesyltranstransferase activity|GO:0004311|9349257|IGI  product GGPS6 (geranylgeranyl pyrophosphate synthase 6); farnesyltranstransferase  note geranylgeranyl pyrophosphate synthase 6 (GGPS6); FUNCTIONS IN: farnesyltranstransferase activity; INVOLVED IN: isoprenoid biosynthetic process; LOCATED IN: mitochondrion; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative (TAIR:AT3G20160.1); Has 11466 Blast hits to 11462 proteins in 1671 species: Archae - 213; Bacteria - 4905; Metazoa - 221; Fungi - 317; Plants - 280; Viruses - 6; Other Eukaryotes - 5524 (source: NCBI BLink).  protein_id AT1G49530.1p  transcript_id AT1G49530.1  protein_id AT1G49530.1p  transcript_id AT1G49530.1  
At1g49540	chr1:018337242	0.0	C/18337242-18337382,18337050-18337137,18336665-18336750,18336416-18336569,18336152-18336312,18335395-18336069,18334970-18335297,18334669-18334889,18334363-18334540,18333767-18334251	AT1G49540.1  CDS  gene_syn F14J22.24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product nucleotide binding  note nucleotide binding; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: nucleotide binding (TAIR:AT1G11160.1); Has 15687 Blast hits to 7910 proteins in 349 species: Archae - 16; Bacteria - 3410; Metazoa - 6087; Fungi - 3088; Plants - 908; Viruses - 0; Other Eukaryotes - 2178 (source: NCBI BLink).  protein_id AT1G49540.1p  transcript_id AT1G49540.1  protein_id AT1G49540.1p  transcript_id AT1G49540.1  
At1g49550	chr1:018338841	0.0	W/18338841-18339830	AT1G49550.1  mRNA_TE_gene  pseudo  gene_syn F14J22.25  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 1.2e-85 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At1g49560	chr1:018342725	0.0	W/18342725-18342899,18342986-18343191,18343305-18343572,18343666-18343742,18343826-18344101	AT1G49560.1  CDS  gene_syn F14J22.20, F14J22_20  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT1G68670.1); Has 867 Blast hits to 861 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 853; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G49560.1p  transcript_id AT1G49560.1  protein_id AT1G49560.1p  transcript_id AT1G49560.1  
At1g49570	chr1:018347077	0.0	W/18347077-18347355,18347629-18347820,18347934-18348099,18348297-18348712	AT1G49570.1  CDS  gene_syn F14J22.19, F14J22_19  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: leaf lamina base, leaf whorl, sepal, hypocotyl, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT5G06730.1); Has 3108 Blast hits to 3092 proteins in 239 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 266; Plants - 2791; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G49570.1p  transcript_id AT1G49570.1  protein_id AT1G49570.1p  transcript_id AT1G49570.1  
At1g49580	chr1:018351611	0.0	W/18351611-18352174,18352276-18352406,18352538-18352579,18352671-18352779,18352863-18352941,18353040-18353336,18353435-18353550,18353632-18353739,18353844-18353906,18353990-18354157,18354241-18354384	AT1G49580.1  CDS  gene_syn F14J22.18, F14J22_18  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_function calcium-dependent protein serine/threonine phosphatase activity|GO:0004723||ISS  go_function calcium ion binding|GO:0005509||ISS  go_function kinase activity|GO:0016301||ISS  product calcium-dependent protein kinase, putative / CDPK, putative  note calcium-dependent protein kinase, putative / CDPK, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), EF-Hand type (InterPro:IPR011992), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase, putative / CDPK, putative (TAIR:AT3G19100.1); Has 87386 Blast hits to 86054 proteins in 2069 species: Archae - 73; Bacteria - 8068; Metazoa - 37724; Fungi - 8413; Plants - 15036; Viruses - 422; Other Eukaryotes - 17650 (source: NCBI BLink).  protein_id AT1G49580.1p  transcript_id AT1G49580.1  protein_id AT1G49580.1p  transcript_id AT1G49580.1  
At1g49590	chr1:018354997	0.0	W/18354997-18355005,18355114-18355314,18355405-18355489,18355747-18355796,18355880-18355975	AT1G49590.2  CDS  gene_syn F14J22.17, F14J22_17  go_component nucleus|GO:0005634||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product formin-binding protein-related  note formin-binding protein-related; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, U1-type (InterPro:IPR003604), Zinc finger, C2H2-type matrin (InterPro:IPR000690).  protein_id AT1G49590.2p  transcript_id AT1G49590.2  protein_id AT1G49590.2p  transcript_id AT1G49590.2  
At1g49590	chr1:018354997	0.0	W/18354997-18355005,18355114-18355314,18355405-18355489,18355880-18355975,18356072-18356409	AT1G49590.1  CDS  gene_syn F14J22.17, F14J22_17  go_component nucleus|GO:0005634||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product formin-binding protein-related  note formin-binding protein-related; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type matrin (InterPro:IPR000690); Has 340 Blast hits to 336 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 213; Fungi - 38; Plants - 54; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT1G49590.1p  transcript_id AT1G49590.1  protein_id AT1G49590.1p  transcript_id AT1G49590.1  
At1g49600	chr1:018359719	0.0	C/18359719-18360150,18358713-18359196,18358416-18358483,18358211-18358341,18357971-18358064,18357236-18357364	AT1G49600.1  CDS  gene_syn ATRBP47A, Arabidopsis thaliana RNA-binding protein 47a, F14J22.16, F14J22_16  gene ATRBP47A  go_function RNA binding|GO:0003723|11105760|ISS  product ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a); RNA binding  note Arabidopsis thaliana RNA-binding protein 47a (ATRBP47A); FUNCTIONS IN: RNA binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: ATRBP47B (RNA-binding protein 47B); RNA binding (TAIR:AT3G19130.1); Has 39346 Blast hits to 20025 proteins in 756 species: Archae - 10; Bacteria - 1779; Metazoa - 20670; Fungi - 4118; Plants - 4813; Viruses - 60; Other Eukaryotes - 7896 (source: NCBI BLink).  protein_id AT1G49600.1p  transcript_id AT1G49600.1  protein_id AT1G49600.1p  transcript_id AT1G49600.1  
At1g49610	chr1:018362749	0.0	C/18362749-18363192,18362528-18362660,18362297-18362424,18362117-18362195,18361679-18361959	AT1G49610.1  CDS  gene_syn F14J22.15, F14J22_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18150.1); Has 1208 Blast hits to 1185 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1208; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G49610.1p  transcript_id AT1G49610.1  protein_id AT1G49610.1p  transcript_id AT1G49610.1  
At1g49620	chr1:018366281	0.0	C/18366281-18366559,18366110-18366162,18365839-18366024,18365692-18365761	AT1G49620.1  CDS  gene_syn F14J22.14, F14J22_14, ICK5, ICN6, KIP-RELATED PROTEIN 7, KRP7  gene ICK5  function Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. Binds to D type cyclins and may inhibit cell cycle.  go_component nucleus|GO:0005634||IEA  go_process negative regulation of cyclin-dependent protein kinase activity|GO:0045736|16376885|IDA  go_process negative regulation of cyclin-dependent protein kinase activity|GO:0045736||TAS  go_function cyclin-dependent protein kinase inhibitor activity|GO:0004861||TAS  go_function cyclin binding|GO:0030332||IPI  product ICK5; cyclin binding / cyclin-dependent protein kinase inhibitor  note ICK5; FUNCTIONS IN: cyclin binding, cyclin-dependent protein kinase inhibitor activity; INVOLVED IN: negative regulation of cyclin-dependent protein kinase activity; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-dependent kinase inhibitor (InterPro:IPR003175), Cyclin-dependent kinase inhibitor, plant (InterPro:IPR016701); BEST Arabidopsis thaliana protein match is: KRP6 (KIP-RELATED PROTEIN 6); cyclin binding / cyclin-dependent protein kinase inhibitor (TAIR:AT3G19150.1); Has 179 Blast hits to 168 proteins in 38 species: Archae - 0; Bacteria - 7; Metazoa - 5; Fungi - 17; Plants - 128; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT1G49620.1p  transcript_id AT1G49620.1  protein_id AT1G49620.1p  transcript_id AT1G49620.1  
At1g49630	chr1:018375048	0.0	C/18375048-18375336,18374592-18374760,18374123-18374297,18373902-18374034,18373713-18373783,18373258-18373341,18373036-18373126,18372399-18372919,18372154-18372318,18371862-18372080,18371656-18371783,18370794-18370983,18370127-18370210,18369950-18370047,18369526-18369790,18369258-18369420,18368976-18369156,18368808-18368879,18368405-18368549	AT1G49630.1  CDS  gene_syn ARABIDOPSIS THALIANA PRESEQUENCE PROTEASE 2, ATPREP2, F14J22.13, F14J22_13  gene ATPREP2  function Zinc metalloprotease pitrilysin subfamily A. Signal peptide degrading enzyme targeted to mitochondria and chloroplasts. Expressed in flower, leaf and root. Not expressed in silique and shoot.  go_component chloroplast|GO:0009507|18431481|IDA  go_function catalytic activity|GO:0003824||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_function metallopeptidase activity|GO:0008237||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function metal ion binding|GO:0046872||IEA  go_component mitochondrion|GO:0005739|15827031|IDA  go_component chloroplast|GO:0009507|15827031|IDA  go_process proteolysis|GO:0006508||ISS  go_process protein maturation by peptide bond cleavage|GO:0051605|15827031|IDA  go_function metalloendopeptidase activity|GO:0004222||ISS  product ATPREP2 (ARABIDOPSIS THALIANA PRESEQUENCE PROTEASE 2); catalytic/ metal ion binding / metalloendopeptidase/ metallopeptidase/ zinc ion binding  note ARABIDOPSIS THALIANA PRESEQUENCE PROTEASE 2 (ATPREP2); FUNCTIONS IN: metallopeptidase activity, metalloendopeptidase activity, zinc ion binding, catalytic activity, metal ion binding; INVOLVED IN: proteolysis, protein maturation by peptide bond cleavage; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M16, zinc-binding site (InterPro:IPR001431), Peptidase M16, C-terminal (InterPro:IPR007863), Peptidase M16C associated (InterPro:IPR013578), Peptidase M16, N-terminal (InterPro:IPR011765), Metalloenzyme, LuxS/M16 peptidase-like, metal-binding (InterPro:IPR011249), Peptidase M16, core (InterPro:IPR011237); BEST Arabidopsis thaliana protein match is: ATPREP1 (PRESEQUENCE PROTEASE 1); metalloendopeptidase (TAIR:AT3G19170.1); Has 2454 Blast hits to 2432 proteins in 700 species: Archae - 2; Bacteria - 1277; Metazoa - 193; Fungi - 178; Plants - 51; Viruses - 0; Other Eukaryotes - 753 (source: NCBI BLink).  protein_id AT1G49630.1p  transcript_id AT1G49630.1  protein_id AT1G49630.1p  transcript_id AT1G49630.1  
At1g49630	chr1:018375048	0.0	C/18375048-18375336,18374592-18374760,18374123-18374297,18373902-18374034,18373713-18373783,18373258-18373341,18373036-18373126,18372399-18372919,18372154-18372318,18371862-18372080,18371656-18371783,18370794-18370983,18370127-18370210,18369950-18370047,18369526-18369790,18369258-18369420,18368976-18369156,18368808-18368879,18368405-18368549	AT1G49630.2  CDS  gene_syn ARABIDOPSIS THALIANA PRESEQUENCE PROTEASE 2, ATPREP2, F14J22.13, F14J22_13  gene ATPREP2  function Zinc metalloprotease pitrilysin subfamily A. Signal peptide degrading enzyme targeted to mitochondria and chloroplasts. Expressed in flower, leaf and root. Not expressed in silique and shoot.  go_component chloroplast|GO:0009507|18431481|IDA  go_function catalytic activity|GO:0003824||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_function metallopeptidase activity|GO:0008237||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function metal ion binding|GO:0046872||IEA  go_component mitochondrion|GO:0005739|15827031|IDA  go_component chloroplast|GO:0009507|15827031|IDA  go_process proteolysis|GO:0006508||ISS  go_process protein maturation by peptide bond cleavage|GO:0051605|15827031|IDA  go_function metalloendopeptidase activity|GO:0004222||ISS  product ATPREP2 (ARABIDOPSIS THALIANA PRESEQUENCE PROTEASE 2); catalytic/ metal ion binding / metalloendopeptidase/ metallopeptidase/ zinc ion binding  note ARABIDOPSIS THALIANA PRESEQUENCE PROTEASE 2 (ATPREP2); FUNCTIONS IN: metallopeptidase activity, metalloendopeptidase activity, catalytic activity, zinc ion binding, metal ion binding; INVOLVED IN: proteolysis, protein maturation by peptide bond cleavage; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M16, zinc-binding site (InterPro:IPR001431), Peptidase M16, C-terminal (InterPro:IPR007863), Peptidase M16C associated (InterPro:IPR013578), Peptidase M16, N-terminal (InterPro:IPR011765), Metalloenzyme, LuxS/M16 peptidase-like, metal-binding (InterPro:IPR011249), Peptidase M16, core (InterPro:IPR011237); BEST Arabidopsis thaliana protein match is: ATPREP1 (PRESEQUENCE PROTEASE 1); metalloendopeptidase (TAIR:AT3G19170.1); Has 2454 Blast hits to 2432 proteins in 700 species: Archae - 2; Bacteria - 1277; Metazoa - 193; Fungi - 178; Plants - 51; Viruses - 0; Other Eukaryotes - 753 (source: NCBI BLink).  protein_id AT1G49630.2p  transcript_id AT1G49630.2  protein_id AT1G49630.2p  transcript_id AT1G49630.2  
At1g49630	chr1:018375048	0.0	C/18375048-18375336,18374592-18374760,18374123-18374297,18373902-18374034,18373713-18373783,18373258-18373341,18373036-18373126,18372399-18372919,18372154-18372318,18371862-18372080,18371656-18371783,18370794-18370983,18370127-18370210,18369950-18370047,18369526-18369790,18369258-18369420,18368976-18369156,18368808-18368879,18368405-18368549	AT1G49630.3  CDS  gene_syn ARABIDOPSIS THALIANA PRESEQUENCE PROTEASE 2, ATPREP2, F14J22.13, F14J22_13  gene ATPREP2  function Zinc metalloprotease pitrilysin subfamily A. Signal peptide degrading enzyme targeted to mitochondria and chloroplasts. Expressed in flower, leaf and root. Not expressed in silique and shoot.  go_component chloroplast|GO:0009507|18431481|IDA  go_function catalytic activity|GO:0003824||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_function metallopeptidase activity|GO:0008237||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function metal ion binding|GO:0046872||IEA  go_component mitochondrion|GO:0005739|15827031|IDA  go_component chloroplast|GO:0009507|15827031|IDA  go_process proteolysis|GO:0006508||ISS  go_process protein maturation by peptide bond cleavage|GO:0051605|15827031|IDA  go_function metalloendopeptidase activity|GO:0004222||ISS  product ATPREP2 (ARABIDOPSIS THALIANA PRESEQUENCE PROTEASE 2); catalytic/ metal ion binding / metalloendopeptidase/ metallopeptidase/ zinc ion binding  note ARABIDOPSIS THALIANA PRESEQUENCE PROTEASE 2 (ATPREP2); FUNCTIONS IN: metallopeptidase activity, metalloendopeptidase activity, zinc ion binding, catalytic activity, metal ion binding; INVOLVED IN: proteolysis, protein maturation by peptide bond cleavage; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M16, zinc-binding site (InterPro:IPR001431), Peptidase M16, C-terminal (InterPro:IPR007863), Peptidase M16C associated (InterPro:IPR013578), Peptidase M16, N-terminal (InterPro:IPR011765), Metalloenzyme, LuxS/M16 peptidase-like, metal-binding (InterPro:IPR011249), Peptidase M16, core (InterPro:IPR011237); BEST Arabidopsis thaliana protein match is: ATPREP1 (PRESEQUENCE PROTEASE 1); metalloendopeptidase (TAIR:AT3G19170.1); Has 2454 Blast hits to 2432 proteins in 700 species: Archae - 2; Bacteria - 1277; Metazoa - 193; Fungi - 178; Plants - 51; Viruses - 0; Other Eukaryotes - 753 (source: NCBI BLink).  protein_id AT1G49630.3p  transcript_id AT1G49630.3  protein_id AT1G49630.3p  transcript_id AT1G49630.3  
At1g49640	chr1:018375697	0.0	C/18375697-18376644	AT1G49640.1  CDS  gene_syn F14J22.12, F14J22_12  go_process metabolic process|GO:0008152||IEA  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  product hydrolase  note hydrolase; FUNCTIONS IN: hydrolase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: cell death associated protein-related (TAIR:AT1G49650.1); Has 5688 Blast hits to 5680 proteins in 841 species: Archae - 49; Bacteria - 2958; Metazoa - 422; Fungi - 532; Plants - 647; Viruses - 5; Other Eukaryotes - 1075 (source: NCBI BLink).  protein_id AT1G49640.1p  transcript_id AT1G49640.1  protein_id AT1G49640.1p  transcript_id AT1G49640.1  
At1g49650	chr1:018377363	0.0	C/18377363-18378487	AT1G49650.1  CDS  gene_syn F14J22.21, F14J22_21  go_process metabolic process|GO:0008152||IEA  go_function hydrolase activity|GO:0016787||IEA  product cell death associated protein-related  note cell death associated protein-related; FUNCTIONS IN: hydrolase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: AtCXE5 (Arabidopsis thaliana carboxyesterase 5); carboxylesterase (TAIR:AT1G49660.1); Has 5320 Blast hits to 5313 proteins in 823 species: Archae - 49; Bacteria - 2825; Metazoa - 369; Fungi - 479; Plants - 664; Viruses - 3; Other Eukaryotes - 931 (source: NCBI BLink).  protein_id AT1G49650.1p  transcript_id AT1G49650.1  protein_id AT1G49650.1p  transcript_id AT1G49650.1  
At1g49660	chr1:018378777	0.0	C/18378777-18379736	AT1G49660.1  CDS  gene_syn Arabidopsis thaliana carboxyesterase 5, AtCXE5, F14J22.11, F14J22_11  gene AtCXE5  function Encodes a protein with carboxylesterase whose activity was tested using pNA.  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function carboxylesterase activity|GO:0004091|17270225|IDA  go_function carboxylesterase activity|GO:0004091|17519238|IDA  product AtCXE5 (Arabidopsis thaliana carboxyesterase 5); carboxylesterase  note Arabidopsis thaliana carboxyesterase 5 (AtCXE5); FUNCTIONS IN: carboxylesterase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: cell death associated protein-related (TAIR:AT1G49650.1); Has 5244 Blast hits to 5235 proteins in 823 species: Archae - 45; Bacteria - 2733; Metazoa - 355; Fungi - 476; Plants - 657; Viruses - 5; Other Eukaryotes - 973 (source: NCBI BLink).  protein_id AT1G49660.1p  transcript_id AT1G49660.1  protein_id AT1G49660.1p  transcript_id AT1G49660.1  
At1g49670	chr1:018385967	0.0	C/18385967-18386021,18385475-18385648,18385202-18385383,18385008-18385113,18384830-18384906,18384473-18384560,18383933-18384119,18383701-18383827,18383469-18383537,18383300-18383401,18383117-18383212,18382886-18382960,18382655-18382774,18382451-18382579,18382260-18382337,18382055-18382141,18381848-18381934,18381591-18381641	AT1G49670.1  CDS  gene_syn F14J22.10, F14J22_10, NQR  gene NQR  function molecular function has not been defined. Was shown involved in oxidative stress tolerance.  go_component peroxisome|GO:0005777|17951448|IDA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process response to oxidative stress|GO:0006979|7592828|IEP  go_process response to oxidative stress|GO:0006979|7592828|IGI  go_process metabolic process|GO:0008152||ISS  go_function zinc ion binding|GO:0008270||ISS  go_function oxidoreductase activity|GO:0016491||ISS  product NQR; binding / catalytic/ oxidoreductase/ zinc ion binding  note NQR; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: response to oxidative stress, metabolic process; LOCATED IN: mitochondrion, peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glucose/ribitol dehydrogenase (InterPro:IPR002347), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198), GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Quinone oxidoreductase/zeta-crystallin, conserved site (InterPro:IPR002364), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: oxidoreductase, zinc-binding dehydrogenase family protein (TAIR:AT3G56460.1); Has 91602 Blast hits to 91374 proteins in 2463 species: Archae - 676; Bacteria - 51872; Metazoa - 6062; Fungi - 5617; Plants - 2208; Viruses - 2; Other Eukaryotes - 25165 (source: NCBI BLink).  protein_id AT1G49670.1p  transcript_id AT1G49670.1  protein_id AT1G49670.1p  transcript_id AT1G49670.1  
At1g49680	chr1:018386867	0.0	W/18386867-18387166	AT1G49680.1  CDS  gene_syn F14J22.22, F14J22_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28870.1); Has 21146 Blast hits to 1155 proteins in 152 species: Archae - 0; Bacteria - 19209; Metazoa - 1001; Fungi - 100; Plants - 47; Viruses - 125; Other Eukaryotes - 664 (source: NCBI BLink).  protein_id AT1G49680.1p  transcript_id AT1G49680.1  protein_id AT1G49680.1p  transcript_id AT1G49680.1  
At1g49690	chr1:018387802	0.0	W/18387802-18387874	AT1G49690.1  tRNA  gene_syn 51780.TRNA-ARG-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: CCT)  transcript_id AT1G49690.1  
At1g49700	chr1:018390458	0.0	C/18390458-18390496,18390257-18390365,18390014-18390172,18389778-18389909,18389512-18389676,18389027-18389088,18388792-18388953	AT1G49700.2  CDS  gene_syn F14J22.9, F14J22_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G07675.1).  protein_id AT1G49700.2p  transcript_id AT1G49700.2  protein_id AT1G49700.2p  transcript_id AT1G49700.2  
At1g49700	chr1:018390458	0.0	C/18390458-18390496,18390257-18390365,18390014-18390172,18389778-18389909,18389512-18389682,18389027-18389088,18388792-18388953	AT1G49700.1  CDS  gene_syn F14J22.9, F14J22_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G07675.1); Has 29 Blast hits to 29 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G49700.1p  transcript_id AT1G49700.1  protein_id AT1G49700.1p  transcript_id AT1G49700.1  
At1g49710	chr1:018393380	0.0	C/18393380-18393769,18393092-18393252,18392752-18392993,18392559-18392663,18392281-18392437,18391966-18392196,18391622-18391877	AT1G49710.1  CDS  gene_syn ATFUT12, F14J22.8, F14J22_8, FUCOSYLTRANSFERASE 12, FUCT2, FUCTB, FUT12  gene FUT12  function Encodes a protein with core &alpha;1,3-fucosyltransferase activity.  go_process protein amino acid glycosylation|GO:0006486||IEA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_function fucosyltransferase activity|GO:0008417|11743104|ISS  go_function fucosyltransferase activity|GO:0008417||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product FUT12 (FUCOSYLTRANSFERASE 12); fucosyltransferase/ transferase, transferring glycosyl groups  note FUCOSYLTRANSFERASE 12 (FUT12); FUNCTIONS IN: transferase activity, transferring glycosyl groups, fucosyltransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: Golgi apparatus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 10 (InterPro:IPR001503); BEST Arabidopsis thaliana protein match is: FUT11 (FUCOSYLTRANSFERASE 11); 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase/ fucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT3G19280.1); Has 1267 Blast hits to 1263 proteins in 141 species: Archae - 2; Bacteria - 103; Metazoa - 899; Fungi - 0; Plants - 83; Viruses - 3; Other Eukaryotes - 177 (source: NCBI BLink).  protein_id AT1G49710.1p  transcript_id AT1G49710.1  protein_id AT1G49710.1p  transcript_id AT1G49710.1  
At1g49715	chr1:018397279	0.0	C/18397279-18397339,18396853-18397055	AT1G49715.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: LCR65 (Low-molecular-weight cysteine-rich 65) (TAIR:AT1G73607.1); Has 18 Blast hits to 18 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G49715.1p  transcript_id AT1G49715.1  protein_id AT1G49715.1p  transcript_id AT1G49715.1  
At1g49720	chr1:018400826	0.0	W/18400826-18401824,18401942-18402013,18402099-18402128,18402277-18402354	AT1G49720.1  CDS  gene_syn ABF1, ABSCISIC ACID RESPONSIVE ELEMENT-BINDING FACTOR 1, F14J22.7, F14J22_7  gene ABF1  function Identified as a protein that binds to abscisic acid response elements. May mediate transcriptional regulation of ABA responses.  go_component nucleus|GO:0005634|12045268|TAS  go_process regulation of transcription, DNA-dependent|GO:0006355|11019812|TAS  go_process response to stress|GO:0006950|10636868|TAS  go_process abscisic acid mediated signaling|GO:0009738|12045268|TAS  go_function DNA binding|GO:0003677|10636868|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|10760247|TAS  go_function transcription factor activity|GO:0003700|11019812|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700|12045268|TAS  go_function protein binding|GO:0005515|16299177|IPI  go_function transcription activator activity|GO:0016563|10636868|IDA  go_function transcription activator activity|GO:0016563|10636868|TAS  product ABF1 (ABSCISIC ACID RESPONSIVE ELEMENT-BINDING FACTOR 1); DNA binding / protein binding / transcription activator/ transcription factor  note ABSCISIC ACID RESPONSIVE ELEMENT-BINDING FACTOR 1 (ABF1); FUNCTIONS IN: protein binding, transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: abscisic acid mediated signaling, regulation of transcription, DNA-dependent, response to stress; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: ABF4 (ABRE BINDING FACTOR 4); DNA binding / protein binding / transcription activator/ transcription factor (TAIR:AT3G19290.1); Has 1248 Blast hits to 1210 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 386; Fungi - 19; Plants - 792; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT1G49720.1p  transcript_id AT1G49720.1  protein_id AT1G49720.1p  transcript_id AT1G49720.1  
At1g49730	chr1:018404548	0.0	C/18404548-18405013,18404191-18404478,18403846-18404110,18403709-18403761,18403515-18403627	AT1G49730.3  CDS  gene_syn F14J22.6, F14J22_6  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G19300.1); Has 20513 Blast hits to 20291 proteins in 568 species: Archae - 1; Bacteria - 103; Metazoa - 6509; Fungi - 313; Plants - 12003; Viruses - 77; Other Eukaryotes - 1507 (source: NCBI BLink).  protein_id AT1G49730.3p  transcript_id AT1G49730.3  protein_id AT1G49730.3p  transcript_id AT1G49730.3  
At1g49730	chr1:018405470	0.0	C/18405470-18405548,18404548-18405102,18404191-18404478,18403846-18404110,18403709-18403761,18403515-18403627	AT1G49730.2  CDS  gene_syn F14J22.6, F14J22_6  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G19300.1); Has 20515 Blast hits to 20293 proteins in 568 species: Archae - 1; Bacteria - 103; Metazoa - 6509; Fungi - 313; Plants - 12005; Viruses - 77; Other Eukaryotes - 1507 (source: NCBI BLink).  protein_id AT1G49730.2p  transcript_id AT1G49730.2  protein_id AT1G49730.2p  transcript_id AT1G49730.2  
At1g49730	chr1:018405470	0.0	C/18405470-18405548,18404548-18405102,18404191-18404478,18403846-18404110,18403709-18403761,18403560-18403627,18403366-18403455,18403205-18403289,18403013-18403126,18402618-18402892	AT1G49730.4  CDS  gene_syn F14J22.6, F14J22_6  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G19300.1); Has 84198 Blast hits to 83255 proteins in 3045 species: Archae - 50; Bacteria - 7505; Metazoa - 37189; Fungi - 6445; Plants - 18519; Viruses - 476; Other Eukaryotes - 14014 (source: NCBI BLink).  protein_id AT1G49730.4p  transcript_id AT1G49730.4  protein_id AT1G49730.4p  transcript_id AT1G49730.4  
At1g49730	chr1:018405470	0.0	C/18405470-18405638,18404548-18405102,18404191-18404478,18403846-18404110,18403709-18403761,18403560-18403627,18403366-18403455,18403205-18403289,18402618-18403126	AT1G49730.1  CDS  gene_syn F14J22.6, F14J22_6  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G19300.1); Has 85260 Blast hits to 84273 proteins in 3053 species: Archae - 50; Bacteria - 7603; Metazoa - 37593; Fungi - 6568; Plants - 18776; Viruses - 486; Other Eukaryotes - 14184 (source: NCBI BLink).  protein_id AT1G49730.1p  transcript_id AT1G49730.1  protein_id AT1G49730.1p  transcript_id AT1G49730.1  
At1g49740	chr1:018407728	0.0	W/18407728-18407811,18408032-18408292,18408373-18408471,18408580-18408883,18408975-18409198,18409278-18409364,18409448-18409468	AT1G49740.1  CDS  gene_syn F14J22.5, F14J22_5  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_function phospholipase C activity|GO:0004629||IEA  go_function phosphoric diester hydrolase activity|GO:0008081||IEA  product phospholipase C/ phosphoric diester hydrolase  note phospholipase C/ phosphoric diester hydrolase; FUNCTIONS IN: phospholipase C activity, phosphoric diester hydrolase activity; INVOLVED IN: intracellular signaling cascade, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific , X region (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946); BEST Arabidopsis thaliana protein match is: phospholipase C/ phosphoric diester hydrolase (TAIR:AT3G19310.1); Has 269 Blast hits to 267 proteins in 54 species: Archae - 0; Bacteria - 35; Metazoa - 8; Fungi - 107; Plants - 78; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT1G49740.1p  transcript_id AT1G49740.1  protein_id AT1G49740.1p  transcript_id AT1G49740.1  
At1g49750	chr1:018411872	0.0	C/18411872-18412779,18411177-18411753	AT1G49750.1  CDS  gene_syn F14J22.4, F14J22_4  go_component chloroplast|GO:0009507|15028209|IDA  go_function protein binding|GO:0005515||IEA  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT3G19320.1); Has 161059 Blast hits to 52984 proteins in 1989 species: Archae - 379; Bacteria - 28049; Metazoa - 49955; Fungi - 11403; Plants - 44933; Viruses - 4435; Other Eukaryotes - 21905 (source: NCBI BLink).  protein_id AT1G49750.1p  transcript_id AT1G49750.1  protein_id AT1G49750.1p  transcript_id AT1G49750.1  
At1g49760	chr1:018416740	0.0	W/18416740-18417034,18417366-18417484,18417621-18418277,18418363-18418440,18418542-18418631,18418723-18418857,18418935-18419129,18419218-18419421,18419511-18419753	AT1G49760.1  CDS  gene_syn F14J22.3, F14J22_3, PAB8, PABP8, POLY(A) BINDING PROTEIN 8  gene PAB8  function polyadenylate-binding protein, putative / PABP, putative, similar to poly(A)-binding protein GB:AAF66825 GI:7673359 from (Nicotiana tabacum). Highly and ubiquitously expressed. Member of the class II PABP family.  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function RNA binding|GO:0003723||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor  note POLY(A) BINDING PROTEIN 8 (PAB8); FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Polyadenylate-binding protein/Hyperplastic disc protein (InterPro:IPR002004), RNA recognition motif, RNP-1 (InterPro:IPR000504), Polyadenylate binding protein, human types 1, 2, 3, 4 (InterPro:IPR006515), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: PAB2 (POLY(A) BINDING 2); RNA binding / translation initiation factor (TAIR:AT4G34110.1); Has 51328 Blast hits to 22004 proteins in 746 species: Archae - 30; Bacteria - 2692; Metazoa - 29215; Fungi - 5935; Plants - 7571; Viruses - 9; Other Eukaryotes - 5876 (source: NCBI BLink).  protein_id AT1G49760.1p  transcript_id AT1G49760.1  protein_id AT1G49760.1p  transcript_id AT1G49760.1  
At1g49770	chr1:018424578	0.0	W/18424578-18424883,18425822-18426337,18426427-18426531	AT1G49770.1  CDS  gene_syn F14J22.2, F14J22_2, RETARDED GROWTH OF EMBRYO 1, RGE1, ZHOUPI, ZOU  gene RGE1  function Encodes a member of the basic helix loop helix family of transcription factors. Loss of RGE1 function causes shriveled seeds that contain small embryos. The cuticle in the embryos does not develop normally, possible due to the adeherence of the endosperm to the developing embryo. RGE1 is expressed in the endosperm surrounding region which directly surrounds the developing embryo, however it exerts its effect non autonomously- in the developing embryo. Mutant seedlings are extremely sensitive to dessication due to the abnormal cuticle.  go_component nucleus|GO:0005634||IEA  go_process embryonic development|GO:0009790|18567831|IMP  go_process embryonic development|GO:0009790|18849529|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product RGE1 (RETARDED GROWTH OF EMBRYO 1); DNA binding / transcription factor  note RETARDED GROWTH OF EMBRYO 1 (RGE1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: embryonic development, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: endosperm; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); Has 624 Blast hits to 624 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 6; Plants - 561; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G49770.1p  transcript_id AT1G49770.1  protein_id AT1G49770.1p  transcript_id AT1G49770.1  
At1g49780	chr1:018429024	0.0	C/18429024-18430289	AT1G49780.1  CDS  gene_syn F14J22.1, F14J22_1, PLANT U-BOX 26, PUB26  gene PUB26  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  product PUB26 (PLANT U-BOX 26); binding / ubiquitin-protein ligase  note PLANT U-BOX 26 (PUB26); FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: PUB25 (PLANT U-BOX 25); binding / ubiquitin-protein ligase (TAIR:AT3G19380.1); Has 1391 Blast hits to 1365 proteins in 103 species: Archae - 0; Bacteria - 14; Metazoa - 114; Fungi - 12; Plants - 1078; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).  protein_id AT1G49780.1p  transcript_id AT1G49780.1  protein_id AT1G49780.1p  transcript_id AT1G49780.1  
At1g49790	chr1:018436795	0.0	C/18436795-18437068,18436137-18436714	AT1G49790.1  CDS  gene_syn F10F5.4, F10F5_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein / S locus-related (TAIR:AT2G43260.1); Has 195 Blast hits to 194 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 193; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G49790.1p  transcript_id AT1G49790.1  protein_id AT1G49790.1p  transcript_id AT1G49790.1  
At1g49790	chr1:018436795	0.0	C/18436795-18437068,18436235-18436714,18435604-18435653,18435351-18435467	AT1G49790.2  CDS  gene_syn F10F5.4, F10F5_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein / S locus-related (TAIR:AT2G43260.1).  protein_id AT1G49790.2p  transcript_id AT1G49790.2  protein_id AT1G49790.2p  transcript_id AT1G49790.2  
At1g49800	chr1:018438550	0.0	C/18438550-18438876	AT1G49800.1  CDS  gene_syn F10F5.5, F10F5_5  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, sepal, stamen; EXPRESSED DURING: 4 anthesis; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G49800.1p  transcript_id AT1G49800.1  protein_id AT1G49800.1p  transcript_id AT1G49800.1  
At1g49810	chr1:018442118	0.0	C/18442118-18442237,18441814-18441987,18441585-18441691,18441202-18441322,18441053-18441114,18440665-18440973,18440169-18440463,18440013-18440087	AT1G49810.1  CDS  gene_syn ATNHD2, F10F5.6, F10F5_6, NHD2, SODIUM:HYDROGEN ANTIPORTER 2  gene ATNHD2  function member of Na+/H+ antiporter-Putative family  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process sodium ion transport|GO:0006814|11500563|ISS  go_function sodium:hydrogen antiporter activity|GO:0015385|11500563|ISS  go_function potassium:hydrogen antiporter activity|GO:0015386||ISS  product ATNHD2; potassium:hydrogen antiporter/ sodium:hydrogen antiporter  note ATNHD2; FUNCTIONS IN: sodium:hydrogen antiporter activity, potassium:hydrogen antiporter activity; INVOLVED IN: sodium ion transport; LOCATED IN: endomembrane system, integral to membrane; CONTAINS InterPro DOMAIN/s: Na+/H+ antiporter NhaD-like (InterPro:IPR018390), Divalent ion symporter (InterPro:IPR004680); BEST Arabidopsis thaliana protein match is: ATNHD1; potassium:hydrogen antiporter/ sodium:hydrogen antiporter (TAIR:AT3G19490.1); Has 1678 Blast hits to 1672 proteins in 422 species: Archae - 42; Bacteria - 886; Metazoa - 103; Fungi - 40; Plants - 29; Viruses - 0; Other Eukaryotes - 578 (source: NCBI BLink).  protein_id AT1G49810.1p  transcript_id AT1G49810.1  protein_id AT1G49810.1p  transcript_id AT1G49810.1  
At1g49820	chr1:018443005	0.0	W/18443005-18443196,18443486-18443795,18443877-18444051,18444133-18444334,18444437-18444651,18444739-18444907	AT1G49820.1  CDS  gene_syn ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE, ATMTK, F10F5.1, F10F5_1  gene ATMTK  function encodes 5-methylthioribose kinase, involved in methionine cycle  go_component cellular_component|GO:0005575||ND  go_process methionine salvage|GO:0019509|17144895|TAS  go_function S-methyl-5-thioribose kinase activity|GO:0046522|15557090|IMP  go_function S-methyl-5-thioribose kinase activity|GO:0046522|15557090|ISS  go_function S-methyl-5-thioribose kinase activity|GO:0046522||ISS  product ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE); S-methyl-5-thioribose kinase  note ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE (ATMTK); FUNCTIONS IN: S-methyl-5-thioribose kinase activity; INVOLVED IN: methionine salvage; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methylthioribose kinase (InterPro:IPR009212), Aminoglycoside phosphotransferase (InterPro:IPR002575), Protein kinase-like (InterPro:IPR011009); Has 524 Blast hits to 524 proteins in 151 species: Archae - 0; Bacteria - 353; Metazoa - 4; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).  protein_id AT1G49820.1p  transcript_id AT1G49820.1  protein_id AT1G49820.1p  transcript_id AT1G49820.1  
At1g49830	chr1:018446390	0.0	C/18446390-18446659,18446098-18446199,18445934-18445999,18445533-18445634,18445111-18445323	AT1G49830.1  CDS  gene_syn F10F5.7, F10F5_7  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription regulator activity|GO:0030528||IEA  product ethylene-responsive protein -related  note ethylene-responsive protein -related; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: ethylene-responsive protein -related (TAIR:AT3G19500.1); Has 558 Blast hits to 558 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 558; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G49830.1p  transcript_id AT1G49830.1  protein_id AT1G49830.1p  transcript_id AT1G49830.1  
At1g49840	chr1:018452243	0.0	W/18452243-18452752,18453104-18453448,18453528-18454157	AT1G49840.1  CDS  gene_syn F10F5.2, F10F5_2  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF620 (InterPro:IPR006873); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19540.1); Has 110 Blast hits to 108 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 110; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G49840.1p  transcript_id AT1G49840.1  protein_id AT1G49840.1p  transcript_id AT1G49840.1  
At1g49850	chr1:018456232	0.0	C/18456232-18456444,18455949-18456142,18455326-18455671	AT1G49850.1  CDS  gene_syn F10F5.8, F10F5_8  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: SDIR1 (SALT- AND DROUGHT-INDUCED RING FINGER1); protein binding / ubiquitin-protein ligase/ zinc ion binding (TAIR:AT3G55530.1); Has 6256 Blast hits to 6238 proteins in 202 species: Archae - 0; Bacteria - 4; Metazoa - 2216; Fungi - 437; Plants - 2560; Viruses - 6; Other Eukaryotes - 1033 (source: NCBI BLink).  protein_id AT1G49850.1p  transcript_id AT1G49850.1  protein_id AT1G49850.1p  transcript_id AT1G49850.1  
At1g49860	chr1:018458710	0.0	W/18458710-18458865,18458966-18459014,18459171-18459730	AT1G49860.1  CDS  gene_syn ATGSTF14, F10F5.9, F10F5_9  gene ATGSTF14  function Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTF14; glutathione transferase  note ATGSTF14; FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTF8 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 8); glutathione binding / glutathione transferase (TAIR:AT2G47730.1); Has 9932 Blast hits to 9916 proteins in 995 species: Archae - 0; Bacteria - 4839; Metazoa - 1942; Fungi - 293; Plants - 996; Viruses - 0; Other Eukaryotes - 1862 (source: NCBI BLink).  protein_id AT1G49860.1p  transcript_id AT1G49860.1  protein_id AT1G49860.1p  transcript_id AT1G49860.1  
At1g49870	chr1:018460345	0.0	W/18460345-18460464,18460917-18461054,18461157-18461329,18461418-18463425,18463510-18463557	AT1G49870.1  CDS  gene_syn F10F5.13, F10F5_13  go_component chloroplast|GO:0009507||IEA  product unknown protein  note LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: MBD10; DNA binding / methyl-CpG binding (TAIR:AT1G15340.1); Has 5602 Blast hits to 4205 proteins in 368 species: Archae - 30; Bacteria - 406; Metazoa - 2889; Fungi - 302; Plants - 153; Viruses - 8; Other Eukaryotes - 1814 (source: NCBI BLink).  protein_id AT1G49870.1p  transcript_id AT1G49870.1  protein_id AT1G49870.1p  transcript_id AT1G49870.1  
At1g49870	chr1:018460911	0.0	W/18460911-18461054,18461157-18461329,18461418-18463425,18463510-18463557	AT1G49870.2  CDS  gene_syn F10F5.13, F10F5_13  product unknown protein  note EXPRESSED IN: 10 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: MBD10; DNA binding / methyl-CpG binding (TAIR:AT1G15340.1); Has 5464 Blast hits to 4072 proteins in 370 species: Archae - 26; Bacteria - 408; Metazoa - 2785; Fungi - 288; Plants - 146; Viruses - 7; Other Eukaryotes - 1804 (source: NCBI BLink).  protein_id AT1G49870.2p  transcript_id AT1G49870.2  protein_id AT1G49870.2p  transcript_id AT1G49870.2  
At1g49880	chr1:018464081	0.0	W/18464081-18464281,18464808-18464885,18465231-18465278,18465482-18465546,18465636-18465713,18465809-18465914	AT1G49880.1  CDS  gene_syn F10F5.3, F10F5_3  go_process oxidation reduction|GO:0055114||IEA  go_function thiol oxidase activity|GO:0016972||IEA  product Erv1/Alr family protein  note Erv1/Alr family protein; FUNCTIONS IN: thiol oxidase activity; INVOLVED IN: oxidation reduction; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ERV/ALR sulphydryl oxidase (InterPro:IPR017905), Erv1/Alr (InterPro:IPR006863); Has 672 Blast hits to 672 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 167; Plants - 30; Viruses - 55; Other Eukaryotes - 310 (source: NCBI BLink).  protein_id AT1G49880.1p  transcript_id AT1G49880.1  protein_id AT1G49880.1p  transcript_id AT1G49880.1  
At1g49890	chr1:018470282	0.0	W/18470282-18471745,18472087-18472206,18472715-18472831,18472928-18473017,18473167-18473274,18473383-18473463	AT1G49890.1  CDS  gene_syn F10F5.10, F10F5_10  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF566 (InterPro:IPR007573); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19570.2); Has 8732 Blast hits to 3718 proteins in 299 species: Archae - 18; Bacteria - 953; Metazoa - 2977; Fungi - 1245; Plants - 215; Viruses - 193; Other Eukaryotes - 3131 (source: NCBI BLink).  protein_id AT1G49890.1p  transcript_id AT1G49890.1  protein_id AT1G49890.1p  transcript_id AT1G49890.1  
At1g49900	chr1:018476413	0.0	C/18476413-18477643,18474108-18475630	AT1G49900.1  CDS  gene_syn T18C15.3  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: AZF2 (ARABIDOPSIS ZINC-FINGER PROTEIN 2); DNA binding / nucleic acid binding / transcription factor/ transcription repressor/ zinc ion binding (TAIR:AT3G19580.2); Has 12091 Blast hits to 7820 proteins in 386 species: Archae - 3; Bacteria - 882; Metazoa - 5186; Fungi - 1446; Plants - 1498; Viruses - 125; Other Eukaryotes - 2951 (source: NCBI BLink).  protein_id AT1G49900.1p  transcript_id AT1G49900.1  protein_id AT1G49900.1p  transcript_id AT1G49900.1  
At1g49910	chr1:018479025	0.0	W/18479025-18479138,18479229-18479359,18479514-18479596,18479690-18479956,18480093-18480168,18480321-18480401,18480716-18480794,18480871-18480971,18481184-18481271	AT1G49910.1  CDS  gene_syn T18C15.2, T18C15_2  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product WD-40 repeat family protein / mitotic checkpoint protein, putative  note WD-40 repeat family protein / mitotic checkpoint protein, putative; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: M germinated pollen stage, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein / mitotic checkpoint protein, putative (TAIR:AT3G19590.1); Has 6540 Blast hits to 4692 proteins in 304 species: Archae - 18; Bacteria - 1420; Metazoa - 2402; Fungi - 1346; Plants - 346; Viruses - 0; Other Eukaryotes - 1008 (source: NCBI BLink).  protein_id AT1G49910.1p  transcript_id AT1G49910.1  protein_id AT1G49910.1p  transcript_id AT1G49910.1  
At1g49920	chr1:018482022	0.0	C/18482022-18484233,18481798-18481943	AT1G49920.1  CDS  gene_syn T18C15.1, T18C15_1  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product zinc finger protein-related  note zinc finger protein-related; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527), Transposase, MuDR, plant (InterPro:IPR004332); BEST Arabidopsis thaliana protein match is: zinc finger protein-related (TAIR:AT1G64260.1); Has 29526 Blast hits to 8747 proteins in 434 species: Archae - 60; Bacteria - 1601; Metazoa - 12348; Fungi - 3131; Plants - 2300; Viruses - 622; Other Eukaryotes - 9464 (source: NCBI BLink).  protein_id AT1G49920.1p  transcript_id AT1G49920.1  protein_id AT1G49920.1p  transcript_id AT1G49920.1  
At1g49930	chr1:018484932	0.0	W/18484932-18485039,18485120-18485292,18485389-18485453,18485581-18485639	AT1G49930.1  CDS  gene_syn F2J10.20, F2J10_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: EMB1030 (EMBRYO DEFECTIVE 1030); ATP binding / alanine-tRNA ligase/ ligase, forming aminoacyl-tRNA and related compounds / nucleic acid binding / nucleotide binding (TAIR:AT5G22800.1); Has 8 Blast hits to 8 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G49930.1p  transcript_id AT1G49930.1  protein_id AT1G49930.1p  transcript_id AT1G49930.1  
At1g49938	chr1:018488089	0.0	C/18488089-18488107,18487960-18488021,18487721-18487796,18487545-18487585	AT1G49938.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT1G49938.1p  transcript_id AT1G49938.1  protein_id AT1G49938.1p  transcript_id AT1G49938.1  
At1g49940	chr1:018490717	0.0	C/18490717-18490820,18490486-18490618,18490248-18490281,18489900-18489977,18489681-18489772,18489499-18489600,18488983-18489061,18488360-18488403	AT1G49940.2  CDS  gene_syn F2J10.17, F2J10_17  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: male sterility MS5 family protein (TAIR:AT1G04770.1).  protein_id AT1G49940.2p  transcript_id AT1G49940.2  protein_id AT1G49940.2p  transcript_id AT1G49940.2  
At1g49940	chr1:018490717	0.0	C/18490717-18490820,18490486-18490618,18490248-18490281,18489900-18489977,18489681-18489772,18489499-18489600,18488983-18489061,18488661-18488731	AT1G49940.1  CDS  gene_syn F2J10.17, F2J10_17  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: male sterility MS5 family protein (TAIR:AT1G04770.1); Has 25 Blast hits to 25 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G49940.1p  transcript_id AT1G49940.1  protein_id AT1G49940.1p  transcript_id AT1G49940.1  
At1g49952	chr1:018492123	0.0	C/18492123-18493258	AT1G49952.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G49952.1  
At1g49950	chr1:018496564	0.0	C/18496564-18496713,18496251-18496459,18495784-18495868,18495098-18495181,18494562-18494921,18494439-18494453	AT1G49950.1  CDS  gene_syn ATTRB1, F2J10.16, F2J10_16, TELOMERE REPEAT BINDING FACTOR 1, TRB1  gene TRB1  function Encodes a telomeric DNA binding protein. In vitro, an N-terminal Myb domain enables it to interact with double-stranded telomeric repeats.  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function double-stranded telomeric DNA binding|GO:0003691|18479720|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein homodimerization activity|GO:0042803|15589838|IPI  product DNA-binding protein, putative  note TELOMERE REPEAT BINDING FACTOR 1 (TRB1); FUNCTIONS IN: transcription factor activity, protein homodimerization activity, DNA binding, double-stranded telomeric DNA binding; INVOLVED IN: in 8 processes; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Histone H1/H5 (InterPro:IPR005818), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: TRB2; DNA binding / double-stranded telomeric DNA binding / protein homodimerization/ single-stranded telomeric DNA binding / transcription factor (TAIR:AT5G67580.2); Has 728 Blast hits to 710 proteins in 139 species: Archae - 7; Bacteria - 46; Metazoa - 112; Fungi - 72; Plants - 403; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT1G49950.1p  transcript_id AT1G49950.1  protein_id AT1G49950.1p  transcript_id AT1G49950.1  
At1g49950	chr1:018496564	0.0	C/18496564-18496713,18496251-18496459,18495784-18495868,18495098-18495181,18494562-18494921,18494439-18494453	AT1G49950.2  CDS  gene_syn ATTRB1, F2J10.16, F2J10_16, TELOMERE REPEAT BINDING FACTOR 1, TRB1  gene TRB1  function Encodes a telomeric DNA binding protein. In vitro, an N-terminal Myb domain enables it to interact with double-stranded telomeric repeats.  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function double-stranded telomeric DNA binding|GO:0003691|18479720|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein homodimerization activity|GO:0042803|15589838|IPI  product DNA-binding protein, putative  note TELOMERE REPEAT BINDING FACTOR 1 (TRB1); FUNCTIONS IN: transcription factor activity, protein homodimerization activity, DNA binding, double-stranded telomeric DNA binding; INVOLVED IN: in 8 processes; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Histone H1/H5 (InterPro:IPR005818), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: TRB2; DNA binding / double-stranded telomeric DNA binding / protein homodimerization/ single-stranded telomeric DNA binding / transcription factor (TAIR:AT5G67580.2); Has 728 Blast hits to 710 proteins in 139 species: Archae - 7; Bacteria - 46; Metazoa - 112; Fungi - 72; Plants - 403; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT1G49950.2p  transcript_id AT1G49950.2  protein_id AT1G49950.2p  transcript_id AT1G49950.2  
At1g49950	chr1:018496564	0.0	C/18496564-18496713,18496251-18496459,18495784-18495868,18495098-18495181,18494562-18494921,18494439-18494453	AT1G49950.3  CDS  gene_syn ATTRB1, F2J10.16, F2J10_16, TELOMERE REPEAT BINDING FACTOR 1, TRB1  gene TRB1  function Encodes a telomeric DNA binding protein. In vitro, an N-terminal Myb domain enables it to interact with double-stranded telomeric repeats.  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function double-stranded telomeric DNA binding|GO:0003691|18479720|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein homodimerization activity|GO:0042803|15589838|IPI  product DNA-binding protein, putative  note TELOMERE REPEAT BINDING FACTOR 1 (TRB1); FUNCTIONS IN: transcription factor activity, protein homodimerization activity, DNA binding, double-stranded telomeric DNA binding; INVOLVED IN: in 8 processes; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Histone H1/H5 (InterPro:IPR005818), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: TRB2; DNA binding / double-stranded telomeric DNA binding / protein homodimerization/ single-stranded telomeric DNA binding / transcription factor (TAIR:AT5G67580.2); Has 728 Blast hits to 710 proteins in 139 species: Archae - 7; Bacteria - 46; Metazoa - 112; Fungi - 72; Plants - 403; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT1G49950.3p  transcript_id AT1G49950.3  protein_id AT1G49950.3p  transcript_id AT1G49950.3  
At1g49960	chr1:018498700	0.0	W/18498700-18498790,18499111-18499208,18499310-18499486,18499579-18499679,18499791-18499866,18499962-18500021,18500099-18500283,18500367-18500463,18500559-18500645,18500738-18500796,18500897-18500988,18501070-18501147,18501235-18501395,18501481-18501699	AT1G49960.1  CDS  gene_syn F2J10.15, F2J10_15  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_function transmembrane transporter activity|GO:0022857||ISS  product xanthine/uracil permease family protein  note xanthine/uracil permease family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: permease, putative (TAIR:AT5G62890.3); Has 4894 Blast hits to 4870 proteins in 931 species: Archae - 37; Bacteria - 3473; Metazoa - 307; Fungi - 93; Plants - 296; Viruses - 4; Other Eukaryotes - 684 (source: NCBI BLink).  protein_id AT1G49960.1p  transcript_id AT1G49960.1  protein_id AT1G49960.1p  transcript_id AT1G49960.1  
At1g49960	chr1:018498700	0.0	W/18498700-18498790,18499111-18499208,18499310-18499486,18499579-18499679,18499791-18499866,18499962-18500021,18500099-18500283,18500367-18500463,18500559-18500645,18500738-18500796,18500897-18501062	AT1G49960.2  CDS  gene_syn F2J10.15, F2J10_15  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_function transmembrane transporter activity|GO:0022857||ISS  product xanthine/uracil permease family protein  note xanthine/uracil permease family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: permease, putative (TAIR:AT5G62890.4); Has 4169 Blast hits to 4152 proteins in 859 species: Archae - 37; Bacteria - 3067; Metazoa - 293; Fungi - 47; Plants - 188; Viruses - 1; Other Eukaryotes - 536 (source: NCBI BLink).  protein_id AT1G49960.2p  transcript_id AT1G49960.2  protein_id AT1G49960.2p  transcript_id AT1G49960.2  
At1g49970	chr1:018504228	0.0	C/18504228-18504462,18503588-18503703,18503244-18503453,18503028-18503132,18502839-18502901,18502554-18502665,18502374-18502435,18502110-18502292,18501936-18502013	AT1G49970.1  CDS  gene_syn CLPR1, F2J10.14, F2J10_14, NCLPP5, NUCLEAR CLPP 5, SUPPRESSOR OF VARIEGATION 2, SVR2  gene CLPR1  function Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastid stroma|GO:0009532|14593120|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_process proteolysis|GO:0006508||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_component chloroplast thylakoid|GO:0009534|10427773|IDA  go_component chloroplast stroma|GO:0009570|11278690|IDA  go_component chloroplastic endopeptidase Clp complex|GO:0009840|11278690|IDA  product CLPR1; serine-type endopeptidase  note CLPR1; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplastic endopeptidase Clp complex, plastid stroma, chloroplast, chloroplast stroma, chloroplast thylakoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: ATP-dependent Clp protease proteolytic subunit, putative (TAIR:AT1G09130.2); Has 7974 Blast hits to 7972 proteins in 1630 species: Archae - 0; Bacteria - 4054; Metazoa - 113; Fungi - 48; Plants - 671; Viruses - 0; Other Eukaryotes - 3088 (source: NCBI BLink).  protein_id AT1G49970.1p  transcript_id AT1G49970.1  protein_id AT1G49970.1p  transcript_id AT1G49970.1  
At1g49975	chr1:018504845	0.0	W/18504845-18505052,18505147-18505193,18505297-18505431	AT1G49975.1  CDS  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 19 Blast hits to 19 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G49975.1p  transcript_id AT1G49975.1  protein_id AT1G49975.1p  transcript_id AT1G49975.1  
At1g49980	chr1:018508026	0.0	W/18508026-18508110,18508388-18508560,18508711-18508884,18508965-18509088,18509177-18509277,18509388-18509474,18509599-18509694,18510116-18510236,18510384-18510512,18510774-18510865,18510948-18511059,18511163-18511748,18511849-18511962,18512090-18512111	AT1G49980.1  CDS  gene_syn F2J10.13, F2J10_13  go_component membrane|GO:0016020|17432890|IDA  go_process DNA repair|GO:0006281||IEA  go_function damaged DNA binding|GO:0003684||IEA  go_function DNA-directed DNA polymerase activity|GO:0003887||IEA  go_process DNA repair|GO:0006281||ISS  product DNA-directed DNA polymerase/ damaged DNA binding  note DNA-directed DNA polymerase/ damaged DNA binding; FUNCTIONS IN: damaged DNA binding, DNA-directed DNA polymerase activity; INVOLVED IN: DNA repair; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase, Y-family, little finger domain (InterPro:IPR017961), DNA-repair protein, UmuC-like (InterPro:IPR001126), DNA-repair protein, UmuC-like, N-terminal (InterPro:IPR017963); BEST Arabidopsis thaliana protein match is: REV1; DNA-directed DNA polymerase (TAIR:AT5G44750.2); Has 6685 Blast hits to 6523 proteins in 1289 species: Archae - 142; Bacteria - 3451; Metazoa - 530; Fungi - 276; Plants - 70; Viruses - 0; Other Eukaryotes - 2216 (source: NCBI BLink).  protein_id AT1G49980.1p  transcript_id AT1G49980.1  protein_id AT1G49980.1p  transcript_id AT1G49980.1  
At1g49990	chr1:018513696	0.0	W/18513696-18514988	AT1G49990.1  CDS  gene_syn F2J10.12, F2J10_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G26010.1); Has 182 Blast hits to 179 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 182; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G49990.1p  transcript_id AT1G49990.1  protein_id AT1G49990.1p  transcript_id AT1G49990.1  
At1g50000	chr1:018517050	0.0	C/18517050-18517244,18516736-18516809,18516273-18516415,18516129-18516175,18515938-18516046,18515764-18515825,18515544-18515658,18515183-18515328	AT1G50000.1  CDS  gene_syn F2J10.21, F2J10_21  go_component chloroplast|GO:0009507||IEA  go_process rRNA processing|GO:0006364||IEA  go_function methyltransferase activity|GO:0008168||IEA  product methyltransferase  note methyltransferase; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: rRNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: PUA-like (InterPro:IPR015947), Ribosomal RNA small subunit methyltransferase E (InterPro:IPR006700); Has 3924 Blast hits to 3924 proteins in 1156 species: Archae - 0; Bacteria - 2219; Metazoa - 2; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 1687 (source: NCBI BLink).  protein_id AT1G50000.1p  transcript_id AT1G50000.1  protein_id AT1G50000.1p  transcript_id AT1G50000.1  
At1g50000	chr1:018517050	0.0	C/18517050-18517244,18516736-18516809,18516273-18516415,18516129-18516175,18515938-18516046,18515764-18515825,18515595-18515597	AT1G50000.2  CDS  gene_syn F2J10.21, F2J10_21  go_component chloroplast|GO:0009507||IEA  go_process rRNA processing|GO:0006364||IEA  go_function methyltransferase activity|GO:0008168||IEA  product methyltransferase  note methyltransferase; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: rRNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: PUA-like (InterPro:IPR015947), Ribosomal RNA small subunit methyltransferase E (InterPro:IPR006700); Has 2752 Blast hits to 2752 proteins in 837 species: Archae - 0; Bacteria - 1580; Metazoa - 2; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 1154 (source: NCBI BLink).  protein_id AT1G50000.2p  transcript_id AT1G50000.2  protein_id AT1G50000.2p  transcript_id AT1G50000.2  
At1g50010	chr1:018517737	0.0	W/18517737-18517829,18518292-18518526,18518620-18518990,18519076-18519729	AT1G50010.1  CDS  gene_syn F2J10.11, F2J10_11, TUA2  gene TUA2  function Encodes alpha-2,4 tubulin. TUA2 and TUA4 encode identical proteins.  go_component cell wall|GO:0005618|16287169|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component cytosol|GO:0005829|18433157|IDA  go_component tubulin complex|GO:0045298|1498608|ISS  go_process microtubule-based process|GO:0007017|1498608|TAS  go_function structural constituent of cytoskeleton|GO:0005200|1498608|ISS  product TUA2; structural constituent of cytoskeleton  note TUA2; FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: microtubule-based process, response to salt stress; LOCATED IN: cytosol, tubulin complex, cell wall, membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alpha tubulin (InterPro:IPR002452), Tubulin, conserved site (InterPro:IPR017975), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase (InterPro:IPR003008), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: TUA4; structural constituent of cytoskeleton (TAIR:AT1G04820.1); Has 16390 Blast hits to 16316 proteins in 3499 species: Archae - 0; Bacteria - 25; Metazoa - 3558; Fungi - 9031; Plants - 1008; Viruses - 0; Other Eukaryotes - 2768 (source: NCBI BLink).  protein_id AT1G50010.1p  transcript_id AT1G50010.1  protein_id AT1G50010.1p  transcript_id AT1G50010.1  
At1g50020	chr1:018521420	0.0	C/18521420-18521600,18520868-18521085,18520570-18520677,18520144-18520266	AT1G50020.1  CDS  gene_syn F2J10.10, F2J10_10  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 19 Blast hits to 19 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G50020.1p  transcript_id AT1G50020.1  protein_id AT1G50020.1p  transcript_id AT1G50020.1  
At1g50030	chr1:018539455	0.0	C/18539455-18539619,18538893-18539231,18538740-18538814,18538390-18538562,18537923-18538021,18537447-18537606,18537235-18537378,18536928-18537097,18536644-18536848,18536382-18536570,18536022-18536174,18535432-18535553,18535244-18535343,18535074-18535169,18534642-18534772,18533831-18533933,18533573-18533755,18533406-18533498,18533271-18533306,18533069-18533167,18532887-18532985,18532630-18532792,18532193-18532317,18532030-18532082,18531465-18531588,18531177-18531347,18530549-18530701,18530330-18530482,18529775-18529846,18529533-18529667,18529395-18529456,18529165-18529262,18528800-18528909,18528550-18528723,18528369-18528434,18527954-18528022,18527736-18527765,18527256-18527396,18527036-18527164,18526748-18526913,18526452-18526660,18526080-18526286,18525803-18525916,18525495-18525698,18525105-18525185,18524926-18525000,18524781-18524847,18524521-18524681,18524201-18524374,18523986-18524114,18523811-18523894,18523641-18523702,18523488-18523560,18523080-18523403,18522742-18522995,18522626-18522644	AT1G50030.2  CDS  gene_syn F2J10.19, F2J10_19, TARGET OF RAPAMYCIN, TOR  gene TOR  function Related to TOR proteins from yeast and mammals, regulators of cell growth in response to nutrient availability. TOR proteins belong to the family of phosphatidylinositol 3-kinase and are targets of the antiproliferative drug rapamycin. AtTOR binds the yeast FKBP12 protein in the presence of Rapamycin, is involved in embryogenesis and is expressed in embryos, endosperm and meristems.  go_component chloroplast|GO:0009507||IEA  go_process embryonic development ending in seed dormancy|GO:0009793|11983923|IMP  go_function protein binding|GO:0005515|16377759|IPI  go_function 1-phosphatidylinositol-3-kinase activity|GO:0016303|11983923|ISS  product TOR (TARGET OF RAPAMYCIN); 1-phosphatidylinositol-3-kinase/ protein binding  note TARGET OF RAPAMYCIN (TOR); FUNCTIONS IN: protein binding, 1-phosphatidylinositol-3-kinase activity; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3- and 4-kinase, catalytic (InterPro:IPR000403), HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), FKBP12-rapamycin-associated protein, FKBP12-rapamycin-binding (InterPro:IPR009076), Protein kinase-like (InterPro:IPR011009), PIK-related kinase, FAT (InterPro:IPR003151), Armadillo-type fold (InterPro:IPR016024), PIK-related kinase (InterPro:IPR014009), Phosphatidylinositol 3- and 4-kinase, conserved site (InterPro:IPR018936), PIK-related kinase, FATC (InterPro:IPR003152); BEST Arabidopsis thaliana protein match is: ATRAD3; binding / inositol or phosphatidylinositol kinase/ phosphotransferase, alcohol group as acceptor / protein serine/threonine kinase (TAIR:AT5G40820.1); Has 3353 Blast hits to 2996 proteins in 206 species: Archae - 0; Bacteria - 14; Metazoa - 1573; Fungi - 750; Plants - 225; Viruses - 4; Other Eukaryotes - 787 (source: NCBI BLink).  protein_id AT1G50030.2p  transcript_id AT1G50030.2  protein_id AT1G50030.2p  transcript_id AT1G50030.2  
At1g50030	chr1:018539455	0.0	C/18539455-18539619,18538893-18539231,18538740-18538814,18538390-18538562,18537923-18538021,18537447-18537606,18537235-18537378,18536928-18537097,18536644-18536848,18536382-18536570,18536022-18536174,18535432-18535553,18535244-18535343,18535074-18535169,18534642-18534772,18533831-18533933,18533573-18533755,18533406-18533498,18533271-18533306,18533069-18533167,18532887-18532985,18532630-18532792,18532193-18532317,18532030-18532082,18531465-18531588,18531177-18531347,18530549-18530701,18530330-18530482,18529775-18529846,18529533-18529667,18529395-18529456,18529165-18529262,18528800-18528909,18528550-18528723,18528369-18528434,18527954-18528022,18527736-18527846,18527256-18527396,18527036-18527164,18526748-18526913,18526452-18526660,18526080-18526286,18525803-18525916,18525495-18525698,18525105-18525185,18524926-18525000,18524781-18524847,18524521-18524681,18524201-18524374,18523986-18524114,18523811-18523894,18523641-18523702,18523488-18523560,18523080-18523403,18522742-18522995,18522626-18522644	AT1G50030.1  CDS  gene_syn F2J10.19, F2J10_19, TARGET OF RAPAMYCIN, TOR  gene TOR  function Related to TOR proteins from yeast and mammals, regulators of cell growth in response to nutrient availability. TOR proteins belong to the family of phosphatidylinositol 3-kinase and are targets of the antiproliferative drug rapamycin. AtTOR binds the yeast FKBP12 protein in the presence of Rapamycin, is involved in embryogenesis and is expressed in embryos, endosperm and meristems.  go_component chloroplast|GO:0009507||IEA  go_process embryonic development ending in seed dormancy|GO:0009793|11983923|IMP  go_function protein binding|GO:0005515|16377759|IPI  go_function 1-phosphatidylinositol-3-kinase activity|GO:0016303|11983923|ISS  product TOR (TARGET OF RAPAMYCIN); 1-phosphatidylinositol-3-kinase/ protein binding  note TARGET OF RAPAMYCIN (TOR); FUNCTIONS IN: protein binding, 1-phosphatidylinositol-3-kinase activity; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Phosphatidylinositol 3- and 4-kinase, catalytic (InterPro:IPR000403), Armadillo-like helical (InterPro:IPR011989), FKBP12-rapamycin-associated protein, FKBP12-rapamycin-binding (InterPro:IPR009076), Protein kinase-like (InterPro:IPR011009), PIK-related kinase, FAT (InterPro:IPR003151), PIK-related kinase (InterPro:IPR014009), Armadillo-type fold (InterPro:IPR016024), PIK-related kinase, FATC (InterPro:IPR003152), Phosphatidylinositol 3- and 4-kinase, conserved site (InterPro:IPR018936); BEST Arabidopsis thaliana protein match is: ATRAD3; binding / inositol or phosphatidylinositol kinase/ phosphotransferase, alcohol group as acceptor / protein serine/threonine kinase (TAIR:AT5G40820.1); Has 3397 Blast hits to 3015 proteins in 204 species: Archae - 0; Bacteria - 10; Metazoa - 1600; Fungi - 753; Plants - 239; Viruses - 4; Other Eukaryotes - 791 (source: NCBI BLink).  protein_id AT1G50030.1p  transcript_id AT1G50030.1  protein_id AT1G50030.1p  transcript_id AT1G50030.1  
At1g50040	chr1:018542236	0.0	W/18542236-18542909,18543115-18543823	AT1G50040.1  CDS  gene_syn F2J10.8, F2J10_8  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: leaf whorl, leaf apex, root, petiole, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, LP.12 twelve leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1005 (InterPro:IPR010410); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19680.1); Has 84 Blast hits to 81 proteins in 13 species: Archae - 0; Bacteria - 4; Metazoa - 7; Fungi - 0; Plants - 72; Viruses - 1; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G50040.1p  transcript_id AT1G50040.1  protein_id AT1G50040.1p  transcript_id AT1G50040.1  
At1g50050	chr1:018546165	0.0	W/18546165-18546504,18546791-18546910,18548736-18548852,18548943-18549046	AT1G50050.1  CDS  gene_syn F2J10.7, F2J10_7  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_component extracellular region|GO:0005576||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pathogenesis-related protein, putative  note pathogenesis-related protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Ves allergen (InterPro:IPR002413), Allergen V5/Tpx-1 related (InterPro:IPR001283), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: pathogenesis-related protein, putative (TAIR:AT1G50060.1); Has 1743 Blast hits to 1713 proteins in 242 species: Archae - 0; Bacteria - 47; Metazoa - 855; Fungi - 195; Plants - 614; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT1G50050.1p  transcript_id AT1G50050.1  protein_id AT1G50050.1p  transcript_id AT1G50050.1  
At1g50055	chr1:018549204	0.0	C/18549204-18550042	AT1G50055.1  ncRNA  gene_syn TAS1B, TRANS-ACTING SIRNA 1B  gene TAS1B  function Trans-acting siRNA1b primary transcript (TAS1b). Regulated by miR173.  go_component cellular_component|GO:0005575||ND  go_process RNA interference|GO:0016246|15851028|IDA  go_function molecular_function|GO:0003674||ND  product TAS1B (TRANS-ACTING SIRNA 1B); other RNA  transcript_id AT1G50055.1  
At1g50060	chr1:018551186	0.0	W/18551186-18551522,18552298-18552446	AT1G50060.1  CDS  gene_syn F2J10.6, F2J10_6  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_component extracellular region|GO:0005576||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pathogenesis-related protein, putative  note pathogenesis-related protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related (InterPro:IPR001283), Ves allergen (InterPro:IPR002413), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: pathogenesis-related protein, putative (TAIR:AT1G50050.1); Has 2080 Blast hits to 2018 proteins in 273 species: Archae - 0; Bacteria - 47; Metazoa - 1166; Fungi - 214; Plants - 602; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT1G50060.1p  transcript_id AT1G50060.1  protein_id AT1G50060.1p  transcript_id AT1G50060.1  
At1g50070	chr1:018552999	0.0	W/18552999-18553078	AT1G50070.1  tRNA  gene_syn 51777.TRNA-LEU-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: TAG)  transcript_id AT1G50070.1  
At1g50080	chr1:018554001	0.0	C/18554001-18554276	AT1G50080.1  CDS  gene_syn F2J10.18, F2J10_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G60720.1); Has 34 Blast hits to 34 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G50080.1p  transcript_id AT1G50080.1  protein_id AT1G50080.1p  transcript_id AT1G50080.1  
At1g50090	chr1:018556751	0.0	C/18556751-18556794,18556431-18556608,18556068-18556244,18555847-18555978,18555504-18555599,18555293-18555409,18555105-18555200,18554905-18555017,18554641-18554791	AT1G50090.1  CDS  gene_syn F2J10.5, F2J10_5  go_process metabolic process|GO:0008152||IEA  go_process branched chain family amino acid metabolic process|GO:0009081||IEA  go_function catalytic activity|GO:0003824||IEA  go_function branched-chain-amino-acid transaminase activity|GO:0004084||IEA  go_component cellular_component|GO:0005575||ND  go_function catalytic activity|GO:0003824||ISS  product aminotransferase class IV family protein  note aminotransferase class IV family protein; FUNCTIONS IN: branched-chain-amino-acid transaminase activity, catalytic activity; INVOLVED IN: branched chain family amino acid metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Aminotransferase, class IV, conserved site (InterPro:IPR018300), Branched-chain amino acid aminotransferase II (InterPro:IPR005786); BEST Arabidopsis thaliana protein match is: branched-chain amino acid aminotransferase 6 / branched-chain amino acid transaminase 6 (BCAT6) (TAIR:AT1G50110.1); Has 8070 Blast hits to 8068 proteins in 1365 species: Archae - 99; Bacteria - 3875; Metazoa - 244; Fungi - 257; Plants - 157; Viruses - 0; Other Eukaryotes - 3438 (source: NCBI BLink).  protein_id AT1G50090.1p  transcript_id AT1G50090.1  protein_id AT1G50090.1p  transcript_id AT1G50090.1  
At1g50100	chr1:018557900	0.0	W/18557900-18557979	AT1G50100.1  tRNA  gene_syn 51777.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: TAG)  transcript_id AT1G50100.1  
At1g50110	chr1:018560185	0.0	C/18560185-18560219,18559841-18560018,18559441-18559617,18559192-18559323,18559012-18559107,18558796-18558912,18558617-18558712,18558423-18558535,18558203-18558329	AT1G50110.1  CDS  gene_syn F2J10.4, F2J10_4  go_process metabolic process|GO:0008152||IEA  go_process branched chain family amino acid metabolic process|GO:0009081||IEA  go_function catalytic activity|GO:0003824||IEA  go_function branched-chain-amino-acid transaminase activity|GO:0004084||IEA  go_component cellular_component|GO:0005575||ND  go_function catalytic activity|GO:0003824||ISS  product branched-chain amino acid aminotransferase 6 / branched-chain amino acid transaminase 6 (BCAT6)  note branched-chain amino acid aminotransferase 6 / branched-chain amino acid transaminase 6 (BCAT6); FUNCTIONS IN: branched-chain-amino-acid transaminase activity, catalytic activity; INVOLVED IN: branched chain family amino acid metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Aminotransferase, class IV, conserved site (InterPro:IPR018300), Branched-chain amino acid aminotransferase II (InterPro:IPR005786); BEST Arabidopsis thaliana protein match is: aminotransferase class IV family protein (TAIR:AT1G50090.1); Has 8190 Blast hits to 8190 proteins in 1366 species: Archae - 99; Bacteria - 4015; Metazoa - 244; Fungi - 259; Plants - 155; Viruses - 0; Other Eukaryotes - 3418 (source: NCBI BLink).  protein_id AT1G50110.1p  transcript_id AT1G50110.1  protein_id AT1G50110.1p  transcript_id AT1G50110.1  
At1g50120	chr1:018562302	0.0	W/18562302-18562596,18562745-18562822,18562978-18563135,18563920-18563995,18564159-18564226,18564353-18564602,18564869-18564985,18565069-18565175,18565266-18565319,18565404-18565487,18565602-18565765,18565868-18566015	AT1G50120.1  CDS  gene_syn F2J10.3, F2J10_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rgp1 (InterPro:IPR014848), Immunoglobulin E-set (InterPro:IPR014756); Has 110 Blast hits to 108 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 76; Fungi - 10; Plants - 20; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G50120.1p  transcript_id AT1G50120.1  protein_id AT1G50120.1p  transcript_id AT1G50120.1  
At1g50130	chr1:018566604	0.0	W/18566604-18569401	AT1G50130.1  pseudogenic_transcript  pseudo  gene_syn F2J10.2  note pseudogene, putative leucyl tRNA synthetase, similar to leucyl tRNA synthetase GB:BAA95667 GI:7804450 from (Homo sapiens); blastp match of 51% identity and 2.5e-213 P-value to GP|26340206|dbj|BAC33766.1||AK049472 unnamed protein product {Mus musculus}  
At1g50140	chr1:018578152	0.0	C/18578152-18578663,18577938-18578062,18577733-18577827,18577418-18577642,18577003-18577093,18576670-18576721,18574607-18574758,18574406-18574476,18573753-18573947,18573616-18573654,18573114-18573221,18572666-18572755,18572496-18572571,18571986-18572082,18571833-18571902,18571573-18571749,18571357-18571479,18571021-18571104,18570703-18570887,18570475-18570613,18570322-18570381,18570161-18570232,18569921-18570028	AT1G50140.2  CDS  gene_syn F2J10.1, F2J10_1  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ATPase activity|GO:0016887||ISS  product ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding  note ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (TAIR:AT3G19740.1); Has 23266 Blast hits to 21686 proteins in 1811 species: Archae - 886; Bacteria - 7684; Metazoa - 4053; Fungi - 2265; Plants - 1509; Viruses - 27; Other Eukaryotes - 6842 (source: NCBI BLink).  protein_id AT1G50140.2p  transcript_id AT1G50140.2  protein_id AT1G50140.2p  transcript_id AT1G50140.2  
At1g50140	chr1:018578152	0.0	C/18578152-18578663,18577938-18578062,18577733-18577827,18577418-18577642,18577003-18577093,18576670-18576721,18575748-18575813,18574607-18574758,18574406-18574476,18573753-18573947,18573616-18573654,18573114-18573221,18572666-18572755,18572496-18572571,18571986-18572082,18571833-18571902,18571573-18571749,18571357-18571479,18571021-18571104,18570703-18570887,18570475-18570613,18570322-18570381,18570161-18570232,18569921-18570028	AT1G50140.1  CDS  gene_syn F2J10.1, F2J10_1  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ATPase activity|GO:0016887||ISS  product ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding  note ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (TAIR:AT3G19740.1); Has 23220 Blast hits to 21651 proteins in 1805 species: Archae - 886; Bacteria - 7686; Metazoa - 4024; Fungi - 2265; Plants - 1512; Viruses - 27; Other Eukaryotes - 6820 (source: NCBI BLink).  protein_id AT1G50140.1p  transcript_id AT1G50140.1  protein_id AT1G50140.1p  transcript_id AT1G50140.1  
At1g50160	chr1:018581429	0.0	W/18581429-18581650	AT1G50160.1  CDS  gene_syn F14I3.22, F14I3_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT2G04420.1); Has 19 Blast hits to 19 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G50160.1p  transcript_id AT1G50160.1  protein_id AT1G50160.1p  transcript_id AT1G50160.1  
At1g50170	chr1:018582087	0.0	W/18582087-18582145,18582241-18582482,18582615-18582676,18582856-18582966,18583089-18583181,18583404-18583514	AT1G50170.1  CDS  gene_syn ARABIDOPSIS THALIANA SIROHYDROCHLORIN FERROCHELATASE B, ATSIRB, F14I3.20, F14I3_20  gene ATSIRB  function encodes sirohydrochlorin ferrochelatase catalyzing the last step of the siroheme biosynthesis  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|15545265|IDA  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_process siroheme biosynthetic process|GO:0019354|15545265|IDA  go_function sirohydrochlorin ferrochelatase activity|GO:0051266|15545265|IDA  product ATSIRB (ARABIDOPSIS THALIANA SIROHYDROCHLORIN FERROCHELATASE B); sirohydrochlorin ferrochelatase  note ARABIDOPSIS THALIANA SIROHYDROCHLORIN FERROCHELATASE B (ATSIRB); FUNCTIONS IN: sirohydrochlorin ferrochelatase activity; INVOLVED IN: response to oxidative stress, siroheme biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12) biosynthesis CbiX (InterPro:IPR002762); Has 1158 Blast hits to 1003 proteins in 347 species: Archae - 102; Bacteria - 789; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 241 (source: NCBI BLink).  protein_id AT1G50170.1p  transcript_id AT1G50170.1  protein_id AT1G50170.1p  transcript_id AT1G50170.1  
At1g50180	chr1:018584235	0.0	W/18584235-18585117,18585195-18585341,18585416-18586074,18586156-18586371,18586468-18587136	AT1G50180.1  CDS  gene_syn F14I3.19, F14I3_19  go_process apoptosis|GO:0006915||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative  note disease resistance protein (CC-NBS-LRR class), putative; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT5G48620.1); Has 9073 Blast hits to 8770 proteins in 329 species: Archae - 8; Bacteria - 224; Metazoa - 235; Fungi - 64; Plants - 8498; Viruses - 2; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT1G50180.1p  transcript_id AT1G50180.1  protein_id AT1G50180.1p  transcript_id AT1G50180.1  
At1g50190	chr1:018590178	0.0	C/18590178-18590799,18589013-18590078,18588229-18588400	AT1G50190.1  CDS  gene_syn F14I3.18, F14I3_18  go_process intracellular signaling cascade|GO:0007242||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular signaling cascade; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT5G42280.1).  protein_id AT1G50190.1p  transcript_id AT1G50190.1  protein_id AT1G50190.1p  transcript_id AT1G50190.1  
At1g50200	chr1:018598017	0.0	C/18598017-18598311,18597513-18597751,18597067-18597207,18596568-18596714,18596208-18596360,18595688-18595817,18595340-18595436,18595061-18595181,18594686-18594745,18594537-18594587,18594372-18594467,18594145-18594246,18593876-18593998,18593360-18593503,18593201-18593272,18593035-18593110,18592811-18592953,18592618-18592726,18592343-18592530,18592154-18592243,18591863-18592045,18591588-18591767,18591429-18591500	AT1G50200.1  CDS  gene_syn ACD, ALANYL-TRNA SYNTHETASE, ALARS, ALATS, F14I3.17, F14I3_17  gene ALATS  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function alanine-tRNA ligase activity|GO:0004813||IEA  go_function ATP binding|GO:0005524||IEA  go_function ligase activity, forming aminoacyl-tRNA and related compounds|GO:0016876||IEA  go_component mitochondrion|GO:0005739|16251277|IDA  go_component chloroplast|GO:0009507|16251277|IDA  go_process alanyl-tRNA aminoacylation|GO:0006419||ISS  product ALATS (ALANYL-TRNA SYNTHETASE); ATP binding / alanine-tRNA ligase/ ligase, forming aminoacyl-tRNA and related compounds / nucleic acid binding / nucleotide binding  note ALANYL-TRNA SYNTHETASE (ALATS); FUNCTIONS IN: alanine-tRNA ligase activity, ligase activity, forming aminoacyl-tRNA and related compounds, nucleotide binding, nucleic acid binding, ATP binding; INVOLVED IN: alanyl-tRNA aminoacylation, response to cadmium ion; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alanyl-tRNA synthetase, class IIc (InterPro:IPR002318), Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain (InterPro:IPR018163), Alanyl-tRNA synthetase, class IIc, anti-codon-binding domain (InterPro:IPR018162), Alanyl-tRNA synthetase, class IIc, conserved region (InterPro:IPR018165), Alanyl-tRNA synthetase, class IIc, N-terminal (InterPro:IPR018164), Threonyl/alanyl tRNA synthetase, SAD (InterPro:IPR012947), Phosphoesterase, DHHA1 (InterPro:IPR003156); BEST Arabidopsis thaliana protein match is: EMB1030 (EMBRYO DEFECTIVE 1030); ATP binding / alanine-tRNA ligase/ ligase, forming aminoacyl-tRNA and related compounds / nucleic acid binding / nucleotide binding (TAIR:AT5G22800.1); Has 11052 Blast hits to 10956 proteins in 1797 species: Archae - 239; Bacteria - 4076; Metazoa - 575; Fungi - 127; Plants - 76; Viruses - 0; Other Eukaryotes - 5959 (source: NCBI BLink).  protein_id AT1G50200.1p  transcript_id AT1G50200.1  protein_id AT1G50200.1p  transcript_id AT1G50200.1  
At1g50210	chr1:018600978	0.0	W/18600978-18601717	AT1G50210.1  pseudogenic_transcript  pseudo  gene_syn F14I3.27  note pseudogene, similar to NBS-LRR protein, blastp match of 61% identity and 8.2e-06 P-value to GP|5918254|emb|CAB56299.1||AJ249448 NBS-LRR protein {Solanum acaule}  
At1g50220	chr1:018604471	0.0	C/18604471-18604575,18604269-18604390,18602958-18603342	AT1G50220.1  CDS  gene_syn F14I3.16, F14I3_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43171.1); Has 15 Blast hits to 15 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G50220.1p  transcript_id AT1G50220.1  protein_id AT1G50220.1p  transcript_id AT1G50220.1  
At1g50240	chr1:018607063	0.0	W/18607063-18607152,18607238-18607312,18607408-18607500,18607606-18607680,18607758-18607850,18608256-18608319,18608408-18608492,18608677-18608749,18608823-18608891,18608999-18609079,18609237-18609309,18609394-18609546,18610059-18610194,18610397-18610568,18610703-18610804,18610879-18611373,18611519-18612658,18612800-18613033,18613144-18613287,18613384-18613464,18613562-18613750,18613843-18614094	AT1G50240.2  CDS  gene_syn FU, FUSED  gene FU  function The FUSED (FU) gene belongs to Ser/Thr protein kinase family and has a key role in the hedgehog signaling pathway known to control cell proliferation and patterning in fruit flies and humans . Arabidopsis thaliana genome has a single Fu gene. Cytokinesis-defective mutants, which we named two-in-one (tio), result from mutations in Arabidopsis Fu. Phenotypic analysis of tio mutants reveals an essential role for TIO in conventional modes of cytokinesis in plant meristems and during male gametogenesis. TIO is tightly localized to the midline of the nascent phragmoplast and remains associated with the expanding phragmoplast ring. This gene was previously annotated as two gene models, AT1G50230.1 and AT1G50240.1, however the experimental evidence exists (Oh et al, Current Biology, 2005) showing that these two models are in fact single gene, named FUSED.  go_component phragmoplast|GO:0009524|16332535|IDA  go_process cytokinesis by cell plate formation|GO:0000911|16332535|IMP  go_process response to heat|GO:0009408|2482931|IEP  go_process cellularization of the embryo sac|GO:0009558|16332535|IMP  go_function protein serine/threonine kinase activity|GO:0004674|16332535|ISS  product FU (FUSED); protein serine/threonine kinase  note FUSED (FU); FUNCTIONS IN: protein serine/threonine kinase activity; INVOLVED IN: response to heat, cellularization of the embryo sac, cytokinesis by cell plate formation; LOCATED IN: phragmoplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2); kinase/ protein kinase (TAIR:AT3G08720.2); Has 101159 Blast hits to 99064 proteins in 3356 species: Archae - 73; Bacteria - 8829; Metazoa - 44067; Fungi - 9190; Plants - 19212; Viruses - 494; Other Eukaryotes - 19294 (source: NCBI BLink).  protein_id AT1G50240.2p  transcript_id AT1G50240.2  protein_id AT1G50240.2p  transcript_id AT1G50240.2  
At1g50250	chr1:018615605	0.0	C/18615605-18616930,18615262-18615508,18614991-18615174,18614708-18614879,18614398-18614619	AT1G50250.1  CDS  gene_syn F14I3.14, F14I3_14, FTSH1, FtsH protease 1  gene FTSH1  function encodes an FTSH protease that is localized to the chloroplast. Involved in the D1 repair cycle of Photosystem II. FtsH1 and FtsH5 are interchangeable in thylakoid membranes.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_component chloroplast|GO:0009507|14630971|IDA  go_component chloroplast thylakoid membrane|GO:0009535|10849347|IDA  go_process photosystem II repair|GO:0010206|16040665|TAS  go_process PSII associated light-harvesting complex II catabolic process|GO:0010304|16157880|TAS  go_function ATP-dependent peptidase activity|GO:0004176|11299370|ISS  go_function metallopeptidase activity|GO:0008237||ISS  go_function ATPase activity|GO:0016887||ISS  product FTSH1 (FtsH protease 1); ATP-dependent peptidase/ ATPase/ metallopeptidase  note FtsH protease 1 (FTSH1); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: photosystem II repair, PSII associated light-harvesting complex II catabolic process; LOCATED IN: thylakoid lumen, chloroplast thylakoid membrane, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: VAR1 (VARIEGATED 1); ATP-dependent peptidase/ ATPase/ metallopeptidase (TAIR:AT5G42270.1); Has 27407 Blast hits to 25763 proteins in 1859 species: Archae - 872; Bacteria - 8729; Metazoa - 4148; Fungi - 2396; Plants - 1765; Viruses - 25; Other Eukaryotes - 9472 (source: NCBI BLink).  protein_id AT1G50250.1p  transcript_id AT1G50250.1  protein_id AT1G50250.1p  transcript_id AT1G50250.1  
At1g50260	chr1:018620856	0.0	C/18620856-18621643,18620331-18620572,18620071-18620089,18619552-18619757,18619257-18619366,18619058-18619156,18618424-18618898,18618255-18618343	AT1G50260.1  CDS  gene_syn F14I3.13, F14I3_13, N-TERMINAL-TRANSMEMBRANE-C2 DOMAIN TYPE 5.1, NTMC2T5.1, NTMC2TYPE5.1  gene NTMC2T5.1  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NTMC2T5.1 (N-TERMINAL-TRANSMEMBRANE-C2 DOMAIN TYPE 5.1)  note N-TERMINAL-TRANSMEMBRANE-C2 DOMAIN TYPE 5.1 (NTMC2T5.1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: NTMC2T5.2 (TAIR:AT3G19830.2); Has 827 Blast hits to 721 proteins in 127 species: Archae - 0; Bacteria - 2; Metazoa - 290; Fungi - 164; Plants - 318; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT1G50260.1p  transcript_id AT1G50260.1  protein_id AT1G50260.1p  transcript_id AT1G50260.1  
At1g50270	chr1:018622044	0.0	W/18622044-18623834	AT1G50270.1  CDS  gene_syn F14I3.12, F14I3_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G13600.1); Has 13275 Blast hits to 4925 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 61; Fungi - 45; Plants - 12893; Viruses - 0; Other Eukaryotes - 276 (source: NCBI BLink).  protein_id AT1G50270.1p  transcript_id AT1G50270.1  protein_id AT1G50270.1p  transcript_id AT1G50270.1  
At1g50280	chr1:018626230	0.0	C/18626230-18626292,18624963-18626144,18623857-18624189	AT1G50280.1  CDS  gene_syn F14I3.11, F14I3_11  go_process response to light stimulus|GO:0009416||IEA  go_function signal transducer activity|GO:0004871||IEA  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process response to light stimulus|GO:0009416||ISS  go_function signal transducer activity|GO:0004871||ISS  product phototropic-responsive NPH3 family protein  note phototropic-responsive NPH3 family protein; FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf lamina base, shoot, leaf whorl, leaf; EXPRESSED DURING: LP.04 four leaves visible, 4 leaf senescence stage, LP.02 two leaves visible; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: phototropic-responsive NPH3 family protein (TAIR:AT3G19850.1); Has 387 Blast hits to 379 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 387; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G50280.1p  transcript_id AT1G50280.1  protein_id AT1G50280.1p  transcript_id AT1G50280.1  
At1g50290	chr1:018627858	0.0	C/18627858-18628262	AT1G50290.1  CDS  gene_syn F14I3.24, F14I3_24  go_component cytosol|GO:0005829|18614705|IMP  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G50290.1p  transcript_id AT1G50290.1  protein_id AT1G50290.1p  transcript_id AT1G50290.1  
At1g50300	chr1:018631558	0.0	C/18631558-18631662,18631119-18631447,18630805-18631002,18630126-18630209,18629668-18629749,18629431-18629554,18628818-18629014	AT1G50300.1  CDS  gene_syn F14I3.10, F14I3_10, TAF15, TBP-associated factor 15  gene TAF15  go_component intracellular|GO:0005622||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product TAF15 (TBP-associated factor 15); RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding  note TBP-associated factor 15 (TAF15); FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: TAF15b (TBP-ASSOCIATED FACTOR 15b); binding / nucleic acid binding / nucleotide binding / zinc ion binding (TAIR:AT5G58470.2); Has 9997 Blast hits to 5816 proteins in 307 species: Archae - 6; Bacteria - 216; Metazoa - 5279; Fungi - 1279; Plants - 1339; Viruses - 12; Other Eukaryotes - 1866 (source: NCBI BLink).  protein_id AT1G50300.1p  transcript_id AT1G50300.1  protein_id AT1G50300.1p  transcript_id AT1G50300.1  
At1g50310	chr1:018635984	0.0	W/18635984-18636122,18636234-18636556,18636899-18637528,18637649-18638110	AT1G50310.1  CDS  gene_syn ATSTP9, F14I3.9, F14I3_9, STP9, SUGAR TRANSPORTER 9  gene STP9  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product STP9 (SUGAR TRANSPORTER 9); carbohydrate transmembrane transporter/ sugar:hydrogen symporter  note SUGAR TRANSPORTER 9 (STP9); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter, putative (TAIR:AT3G19940.1); Has 19582 Blast hits to 19239 proteins in 1239 species: Archae - 281; Bacteria - 8248; Metazoa - 3956; Fungi - 4600; Plants - 1344; Viruses - 0; Other Eukaryotes - 1153 (source: NCBI BLink).  protein_id AT1G50310.1p  transcript_id AT1G50310.1  protein_id AT1G50310.1p  transcript_id AT1G50310.1  
At1g50320	chr1:018639123	0.0	C/18639123-18639464,18638606-18638812	AT1G50320.1  CDS  gene_syn ATHX, ATX, thioredoxin x  gene ATHX  function encodes a prokaryotic thioredoxin  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid|GO:0009534|19259774|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|19259774|IDA  go_process positive regulation of catalytic activity|GO:0043085|11169189|IDA  go_function enzyme activator activity|GO:0008047|11169189|IDA  product ATHX; enzyme activator  note ATHX; FUNCTIONS IN: enzyme activator activity; INVOLVED IN: positive regulation of catalytic activity; LOCATED IN: chloroplast, chloroplast stroma, chloroplast thylakoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATY1 (ARABIDOPSIS THIOREDOXIN Y1); electron carrier/ protein disulfide oxidoreductase (TAIR:AT1G76760.1); Has 13930 Blast hits to 13028 proteins in 1721 species: Archae - 175; Bacteria - 6141; Metazoa - 2111; Fungi - 745; Plants - 1072; Viruses - 3; Other Eukaryotes - 3683 (source: NCBI BLink).  protein_id AT1G50320.1p  transcript_id AT1G50320.1  protein_id AT1G50320.1p  transcript_id AT1G50320.1  
At1g50325	chr1:018639886	0.0	C/18639886-18640479	AT1G50325.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  product enzyme inhibitor/ pectinesterase  note enzyme inhibitor/ pectinesterase; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT1G50340.1); Has 41 Blast hits to 40 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G50325.1p  transcript_id AT1G50325.1  protein_id AT1G50325.1p  transcript_id AT1G50325.1  
At1g50330	chr1:018644317	0.0	C/18644317-18645154	AT1G50330.1  pseudogenic_transcript  pseudo  gene_syn F14I3.7  note pseudogene, similar to pectin methylesterase, blastp match of 57% identity and 9.8e-69 P-value to GP|20269071|emb|CAD29733.1||AJ441325 pectin methylesterase {Sesbania rostrata}  
At1g50340	chr1:018647376	0.0	C/18647376-18647849	AT1G50340.1  CDS  gene_syn F14I3.26, F14I3_26  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: enzyme inhibitor/ pectinesterase (TAIR:AT1G50325.1); Has 37 Blast hits to 36 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G50340.1p  transcript_id AT1G50340.1  protein_id AT1G50340.1p  transcript_id AT1G50340.1  
At1g50350	chr1:018648756	0.0	W/18648756-18649073,18649144-18649227	AT1G50350.1  CDS  gene_syn F14I3.23, F14I3_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G19950.1); Has 18 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G50350.1p  transcript_id AT1G50350.1  protein_id AT1G50350.1p  transcript_id AT1G50350.1  
At1g50360	chr1:018650688	0.0	W/18650688-18651002,18651140-18651241,18651330-18651473,18651600-18651750,18651843-18651870,18652173-18652338,18652446-18652509,18652603-18652616,18652716-18652800,18652974-18653077,18653167-18653305,18653507-18653625,18653796-18653948,18654083-18654172,18654287-18654364,18654572-18654730,18654877-18655083,18655275-18655480,18655607-18655742,18655829-18655958,18656044-18656190,18656294-18656361,18656450-18657106	AT1G50360.1  CDS  gene_syn ATVIIIA, F14I3.6, F14I3_6, MYOSIN VIII A, VIIIA  gene VIIIA  function member of Myosin-like proteins  go_component plasma membrane|GO:0005886|17317660|IDA  go_component myosin complex|GO:0016459||ISS  go_process actin filament-based movement|GO:0030048|11516337|TAS  go_function motor activity|GO:0003774|11516337|ISS  go_function motor activity|GO:0003774||ISS  product VIIIA; motor  note VIIIA; FUNCTIONS IN: motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: plasma membrane, myosin complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Myosin head, motor region (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: ATM1 (ARABIDOPSIS THALIANA MYOSIN 1); motor (TAIR:AT3G19960.1); Has 5571 Blast hits to 5164 proteins in 464 species: Archae - 0; Bacteria - 4; Metazoa - 3936; Fungi - 482; Plants - 290; Viruses - 0; Other Eukaryotes - 859 (source: NCBI BLink).  protein_id AT1G50360.1p  transcript_id AT1G50360.1  protein_id AT1G50360.1p  transcript_id AT1G50360.1  
At1g50370	chr1:018658894	0.0	W/18658894-18658974,18659425-18659571,18659657-18659724,18659941-18659998,18660358-18660468,18660581-18660631,18660737-18660880,18660978-18661073,18661163-18661234,18661589-18661672	AT1G50370.1  CDS  gene_syn F14I3.5, F14I3_5  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product serine/threonine protein phosphatase, putative  note serine/threonine protein phosphatase, putative; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3); protein binding / protein serine/threonine kinase/ protein serine/threonine phosphatase (TAIR:AT3G19980.1); Has 5325 Blast hits to 5212 proteins in 378 species: Archae - 51; Bacteria - 183; Metazoa - 2026; Fungi - 930; Plants - 608; Viruses - 8; Other Eukaryotes - 1519 (source: NCBI BLink).  protein_id AT1G50370.1p  transcript_id AT1G50370.1  protein_id AT1G50370.1p  transcript_id AT1G50370.1  
At1g50380	chr1:018662480	0.0	W/18662480-18662651,18662799-18663082,18663184-18663378,18663598-18663944,18664151-18664442,18664722-18664880,18664974-18665339,18665556-18665621,18665713-18665761,18665891-18666014,18666107-18666185	AT1G50380.1  CDS  gene_syn F14I3.4, F14I3_4  go_process proteolysis|GO:0006508||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function serine-type peptidase activity|GO:0008236||IEA  go_component cellular_component|GO:0005575||ND  go_process proteolysis|GO:0006508||ISS  go_function serine-type peptidase activity|GO:0008236||ISS  product prolyl oligopeptidase family protein  note prolyl oligopeptidase family protein; FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase active site region (InterPro:IPR001375), Peptidase S9A, oligopeptidase, N-terminal beta-propeller (InterPro:IPR004106), Peptidase S9A, prolyl oligopeptidase (InterPro:IPR002470); BEST Arabidopsis thaliana protein match is: prolyl oligopeptidase family protein (TAIR:AT1G69020.1); Has 6063 Blast hits to 6017 proteins in 719 species: Archae - 41; Bacteria - 1884; Metazoa - 253; Fungi - 18; Plants - 99; Viruses - 0; Other Eukaryotes - 3768 (source: NCBI BLink).  protein_id AT1G50380.1p  transcript_id AT1G50380.1  protein_id AT1G50380.1p  transcript_id AT1G50380.1  
At1g50390	chr1:018667540	0.0	C/18667540-18667677,18667405-18667452,18667200-18667316,18666986-18667123	AT1G50390.1  CDS  gene_syn F14I3.3, F14I3_3  go_process sucrose biosynthetic process|GO:0005986||IEA  go_process sucrose catabolic process, using beta-fructofuranosidase|GO:0019575||IEA  go_process acetate fermentation|GO:0019654||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product fructokinase-related  note fructokinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-type carbohydrate kinase family protein (TAIR:AT1G06030.1); Has 4416 Blast hits to 4416 proteins in 865 species: Archae - 60; Bacteria - 3076; Metazoa - 18; Fungi - 53; Plants - 188; Viruses - 0; Other Eukaryotes - 1021 (source: NCBI BLink).  protein_id AT1G50390.1p  transcript_id AT1G50390.1  protein_id AT1G50390.1p  transcript_id AT1G50390.1  
At1g50400	chr1:018668155	0.0	W/18668155-18668281,18668566-18668647,18668730-18668835,18668918-18669013,18669108-18669158,18669240-18669305,18669493-18669594,18669751-18669819,18669900-18669983,18670075-18670170,18670269-18670322	AT1G50400.1  CDS  gene_syn F14I3.2, F14I3_2  go_component mitochondrial outer membrane|GO:0005741||IEA  go_process anion transport|GO:0006820||IEA  go_function voltage-gated anion channel activity|GO:0008308||IEA  go_component mitochondrial outer membrane|GO:0005741||ISS  go_process anion transport|GO:0006820||ISS  go_function voltage-gated anion channel activity|GO:0008308||ISS  product porin family protein  note porin family protein; FUNCTIONS IN: voltage-gated anion channel activity; INVOLVED IN: anion transport; LOCATED IN: mitochondrial outer membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Porin, eukaryotic type (InterPro:IPR001925); BEST Arabidopsis thaliana protein match is: TOM40; P-P-bond-hydrolysis-driven protein transmembrane transporter/ voltage-gated anion channel (TAIR:AT3G20000.1); Has 397 Blast hits to 397 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 97; Plants - 32; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT1G50400.1p  transcript_id AT1G50400.1  protein_id AT1G50400.1p  transcript_id AT1G50400.1  
At1g50410	chr1:018672828	0.0	W/18672828-18672918,18672997-18673523,18674023-18674094,18674166-18674243,18674329-18675259,18675606-18675736,18675947-18676165,18676288-18676869,18676968-18677177,18677261-18677365	AT1G50410.1  CDS  gene_syn F11F12.23, F11F12_23  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function DNA binding|GO:0003677||ISS  go_function helicase activity|GO:0004386||ISS  go_function protein binding|GO:0005515||ISS  go_function ATP binding|GO:0005524||ISS  go_function zinc ion binding|GO:0008270||ISS  product SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein  note SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; FUNCTIONS IN: in 6 functions; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein (TAIR:AT3G20010.1); Has 17251 Blast hits to 10882 proteins in 1059 species: Archae - 56; Bacteria - 4149; Metazoa - 5282; Fungi - 3525; Plants - 1191; Viruses - 138; Other Eukaryotes - 2910 (source: NCBI BLink).  protein_id AT1G50410.1p  transcript_id AT1G50410.1  protein_id AT1G50410.1p  transcript_id AT1G50410.1  
At1g50420	chr1:018678177	0.0	C/18678177-18679625	AT1G50420.1  CDS  gene_syn F11F12.22, F11F12_22, SCARECROW-LIKE 3, SCL-3, SCL3  gene SCL3  function Encodes a scarecrow-like protein (SCL3) Putative transcription factors interacting with the gene product of VHA-B1 (vacuolar ATPase subunit B1; as shown through yeast two-hybrid assay).  go_component nucleus|GO:0005634|17081979|IDA  go_process response to gibberellin stimulus|GO:0009739|17933900|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|10341448|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product SCL3; transcription factor  note SCL3; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to gibberellin stimulus, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: SCL21 (SCARECROW-LIKE 21); transcription factor (TAIR:AT2G04890.1); Has 1744 Blast hits to 1402 proteins in 198 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 1738; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G50420.1p  transcript_id AT1G50420.1  protein_id AT1G50420.1p  transcript_id AT1G50420.1  
At1g50430	chr1:018685470	0.0	C/18685470-18685555,18684955-18685177,18684831-18684886,18684620-18684722,18684449-18684514,18683937-18684050,18683680-18683806,18683350-18683450,18682838-18682963,18682664-18682728,18682506-18682587,18682334-18682416,18682175-18682241	AT1G50430.1  CDS  gene_syn 7RED, DELTA5,7-STEROL DELTA7 REDUCTASE, DWARF 5, DWF5, F11F12.21, F11F12_21, LE, LEPIDA, PA, PARVA, ST7R, STEROL DELTA7 REDUCTASE  gene DWF5  function Mutants are defective in Brassinosteroid biosynthesis (delta7-sterol-C7 reduction step) and have a dwarf phenotype.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component integral to endoplasmic reticulum membrane|GO:0030176|8631902|IDA  go_process unidimensional cell growth|GO:0009826|10758495|TAS  go_process sterol biosynthetic process|GO:0016126|10758495|TAS  go_process brassinosteroid biosynthetic process|GO:0016132|10758495|IMP  go_function sterol delta7 reductase activity|GO:0009918|10758495|IMP  product DWF5 (DWARF 5); sterol delta7 reductase  note DWARF 5 (DWF5); FUNCTIONS IN: sterol delta7 reductase activity; INVOLVED IN: sterol biosynthetic process, unidimensional cell growth, brassinosteroid biosynthetic process; LOCATED IN: integral to endoplasmic reticulum membrane, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sterol reductase, conserved site (InterPro:IPR018083), Ergosterol biosynthesis ERG4/ERG24 (InterPro:IPR001171); BEST Arabidopsis thaliana protein match is: FK (FACKEL); delta14-sterol reductase (TAIR:AT3G52940.1); Has 712 Blast hits to 711 proteins in 148 species: Archae - 0; Bacteria - 36; Metazoa - 236; Fungi - 257; Plants - 106; Viruses - 3; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT1G50430.1p  transcript_id AT1G50430.1  protein_id AT1G50430.1p  transcript_id AT1G50430.1  
At1g50430	chr1:018685470	0.0	C/18685470-18685555,18684955-18685177,18684834-18684886,18684620-18684722,18684449-18684514,18683937-18684050,18683680-18683806,18683350-18683450,18682838-18682963,18682664-18682728,18682506-18682587,18682334-18682416,18682175-18682241	AT1G50430.2  CDS  gene_syn 7RED, DELTA5,7-STEROL DELTA7 REDUCTASE, DWARF 5, DWF5, F11F12.21, F11F12_21, LE, LEPIDA, PA, PARVA, ST7R, STEROL DELTA7 REDUCTASE  gene DWF5  function Mutants are defective in Brassinosteroid biosynthesis (delta7-sterol-C7 reduction step) and have a dwarf phenotype.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component integral to endoplasmic reticulum membrane|GO:0030176|8631902|IDA  go_process unidimensional cell growth|GO:0009826|10758495|TAS  go_process sterol biosynthetic process|GO:0016126|10758495|TAS  go_process brassinosteroid biosynthetic process|GO:0016132|10758495|IMP  go_function sterol delta7 reductase activity|GO:0009918|10758495|IMP  product DWF5 (DWARF 5); sterol delta7 reductase  note DWARF 5 (DWF5); FUNCTIONS IN: sterol delta7 reductase activity; INVOLVED IN: sterol biosynthetic process, unidimensional cell growth, brassinosteroid biosynthetic process; LOCATED IN: integral to endoplasmic reticulum membrane, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sterol reductase, conserved site (InterPro:IPR018083), Ergosterol biosynthesis ERG4/ERG24 (InterPro:IPR001171); BEST Arabidopsis thaliana protein match is: FK (FACKEL); delta14-sterol reductase (TAIR:AT3G52940.1); Has 711 Blast hits to 710 proteins in 148 species: Archae - 0; Bacteria - 36; Metazoa - 235; Fungi - 257; Plants - 106; Viruses - 3; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT1G50430.2p  transcript_id AT1G50430.2  protein_id AT1G50430.2p  transcript_id AT1G50430.2  
At1g50440	chr1:018686099	0.0	W/18686099-18686312,18686388-18686473,18686576-18686722,18687124-18687226,18687358-18687470,18687557-18687646	AT1G50440.1  CDS  gene_syn F11F12.20, F11F12_20  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT2G22120.1); Has 722 Blast hits to 707 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 308; Fungi - 79; Plants - 160; Viruses - 16; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT1G50440.1p  transcript_id AT1G50440.1  protein_id AT1G50440.1p  transcript_id AT1G50440.1  
At1g50440	chr1:018686099	0.0	W/18686099-18686312,18686388-18686473,18686576-18686722,18687124-18687226,18687358-18687470,18687557-18687646	AT1G50440.2  CDS  gene_syn F11F12.20, F11F12_20  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT2G22120.1); Has 722 Blast hits to 707 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 308; Fungi - 79; Plants - 160; Viruses - 16; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT1G50440.2p  transcript_id AT1G50440.2  protein_id AT1G50440.2p  transcript_id AT1G50440.2  
At1g50440	chr1:018686099	0.0	W/18686099-18686312,18686388-18686473,18686576-18686722,18687124-18687226,18687358-18687470,18687557-18687646	AT1G50440.3  CDS  gene_syn F11F12.20, F11F12_20  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT2G22120.1); Has 722 Blast hits to 707 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 308; Fungi - 79; Plants - 160; Viruses - 16; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT1G50440.3p  transcript_id AT1G50440.3  protein_id AT1G50440.3p  transcript_id AT1G50440.3  
At1g50450	chr1:018690128	0.0	C/18690128-18690348,18689945-18690042,18689713-18689795,18689474-18689600,18689320-18689383,18689116-18689213,18688936-18689020,18688737-18688860,18688543-18688644,18688391-18688455,18688225-18688306,18688057-18688136,18687902-18687959	AT1G50450.1  CDS  gene_syn F11F12.19, F11F12_19  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  product binding / catalytic  note binding / catalytic; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Saccharopine dehydrogenase (InterPro:IPR005097), NAD(P)-binding (InterPro:IPR016040); Has 934 Blast hits to 931 proteins in 259 species: Archae - 13; Bacteria - 434; Metazoa - 33; Fungi - 62; Plants - 25; Viruses - 0; Other Eukaryotes - 367 (source: NCBI BLink).  protein_id AT1G50450.1p  transcript_id AT1G50450.1  protein_id AT1G50450.1p  transcript_id AT1G50450.1  
At1g50460	chr1:018694031	0.0	W/18694031-18694302,18695227-18695377,18695482-18695661,18695929-18696003,18696150-18696305,18696396-18696494,18696591-18696718,18696915-18696993,18697073-18697429	AT1G50460.1  CDS  gene_syn F11F12.18, F11F12_18, HEXOKINASE-LIKE 1, HKL1  gene HKL1  go_component mitochondrion|GO:0005739|12953116|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component mitochondrion|GO:0005739|18481082|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process response to osmotic stress|GO:0006970|17234224|IEP  go_process response to cold|GO:0009409|17234224|IEP  go_process response to salt stress|GO:0009651|17234224|IEP  go_function glucokinase activity|GO:0004340|18481082|IDA  go_function hexokinase activity|GO:0004396||ISS  go_function ATP binding|GO:0005524||ISS  go_function fructokinase activity|GO:0008865|18481082|IDA  product HKL1 (HEXOKINASE-LIKE 1); ATP binding / fructokinase/ glucokinase/ hexokinase  note HEXOKINASE-LIKE 1 (HKL1); FUNCTIONS IN: hexokinase activity, fructokinase activity, glucokinase activity, ATP binding; INVOLVED IN: response to salt stress, response to cold, response to osmotic stress; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hexokinase (InterPro:IPR001312); BEST Arabidopsis thaliana protein match is: ATHXK4; ATP binding / fructokinase/ glucokinase/ hexokinase (TAIR:AT3G20040.1); Has 1756 Blast hits to 1518 proteins in 231 species: Archae - 0; Bacteria - 30; Metazoa - 1025; Fungi - 386; Plants - 200; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).  protein_id AT1G50460.1p  transcript_id AT1G50460.1  protein_id AT1G50460.1p  transcript_id AT1G50460.1  
At1g50470	chr1:018700372	0.0	C/18700372-18700444,18700000-18700292	AT1G50470.1  CDS  gene_syn F11F12.24, F11F12_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, sperm cell, male gametophyte; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: F-box associated (InterPro:IPR006527); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G17560.1); Has 143 Blast hits to 143 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G50470.1p  transcript_id AT1G50470.1  protein_id AT1G50470.1p  transcript_id AT1G50470.1  
At1g50480	chr1:018702064	0.0	W/18702064-18702219,18702645-18702794,18702889-18704064,18704164-18704310,18704412-18704687	AT1G50480.1  CDS  gene_syn 10-FORMYLTETRAHYDROFOLATE SYNTHETASE, F11F12.17, THFS  gene THFS  function 10-formyltetrahydrofolate synthetase (THFS) mRNA, complete  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function copper ion binding|GO:0005507|16526091|IDA  go_process folic acid and derivative biosynthetic process|GO:0009396||ISS  go_function formate-tetrahydrofolate ligase activity|GO:0004329||ISS  go_function ATP binding|GO:0005524||ISS  product THFS (10-FORMYLTETRAHYDROFOLATE SYNTHETASE); ATP binding / copper ion binding / formate-tetrahydrofolate ligase  note 10-FORMYLTETRAHYDROFOLATE SYNTHETASE (THFS); FUNCTIONS IN: formate-tetrahydrofolate ligase activity, copper ion binding, ATP binding; INVOLVED IN: response to cadmium ion, folic acid and derivative biosynthetic process; LOCATED IN: apoplast, chloroplast, plasma membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Formate-tetrahydrofolate ligase, FTHFS (InterPro:IPR000559); BEST Arabidopsis thaliana protein match is: ligase, putative (TAIR:AT2G12280.1); Has 5063 Blast hits to 5034 proteins in 759 species: Archae - 23; Bacteria - 1900; Metazoa - 237; Fungi - 119; Plants - 30; Viruses - 0; Other Eukaryotes - 2754 (source: NCBI BLink).  protein_id AT1G50480.1p  transcript_id AT1G50480.1  protein_id AT1G50480.1p  transcript_id AT1G50480.1  
At1g50490	chr1:018706188	0.0	C/18706188-18706303,18705768-18705795,18705454-18705681,18705296-18705359,18705151-18705210,18705005-18705051	AT1G50490.1  CDS  gene_syn F11F12.16, UBC20, ubiquitin-conjugating enzyme 20  gene UBC20  function Encodes one of two ubiquitin-conjugating enzymes belonging to the E2-C gene family (the other being UBC19). Transcript is always found in diving cells, but also in other non-dividing cells.  go_process cell proliferation|GO:0008283|12427990|IEP  go_function ubiquitin-protein ligase activity|GO:0004842|12427990|ISS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC20 (ubiquitin-conjugating enzyme 20); ubiquitin-protein ligase  note ubiquitin-conjugating enzyme 20 (UBC20); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: cell proliferation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme E2 H10 (InterPro:IPR015582), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC19 (ubiquitin-conjugating enzyme19); ubiquitin-protein ligase (TAIR:AT3G20060.1); Has 7421 Blast hits to 7414 proteins in 304 species: Archae - 0; Bacteria - 0; Metazoa - 3638; Fungi - 1384; Plants - 1097; Viruses - 19; Other Eukaryotes - 1283 (source: NCBI BLink).  protein_id AT1G50490.1p  transcript_id AT1G50490.1  protein_id AT1G50490.1p  transcript_id AT1G50490.1  
At1g50500	chr1:018715549	0.0	C/18715549-18715597,18715283-18715377,18715131-18715187,18714849-18714999,18714606-18714676,18714272-18714396,18713746-18713906,18713518-18713659,18712768-18712831,18712379-18712564,18712244-18712297,18711850-18711954,18711708-18711767,18711196-18711273,18710802-18710909,18710667-18710732,18710056-18710133,18709851-18709984,18709668-18709761,18709432-18709509,18709036-18709098,18708644-18708808,18708217-18708519	AT1G50500.1  CDS  gene_syn ARABIDOPSIS THALIANA VPS53 HOMOLOG, ATVPS53, HEAT-INTOLERANT 1, HIT1, VPS53  gene HIT1  function encodes a member of VPS53 family protein involved in the retrograde trafficking of vesicles to the late Golgi. Mutants in this gene are more sensitive to heat and osmotic stress.  go_component mitochondrion|GO:0005739|14671022|IDA  go_process transport|GO:0006810||ISS  go_process retrograde vesicle-mediated transport, Golgi to ER|GO:0006890|16408208|ISS  go_process response to osmotic stress|GO:0006970|16408208|IMP  go_process response to heat|GO:0009408|16408208|IMP  go_function transporter activity|GO:0005215||ISS  product HIT1 (HEAT-INTOLERANT 1); transporter  note HEAT-INTOLERANT 1 (HIT1); FUNCTIONS IN: transporter activity; INVOLVED IN: retrograde vesicle-mediated transport, Golgi to ER, transport, response to heat, response to osmotic stress; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Vps53-like, N-terminal (InterPro:IPR007234); BEST Arabidopsis thaliana protein match is: membrane trafficking VPS53 family protein (TAIR:AT1G50970.1); Has 682 Blast hits to 662 proteins in 182 species: Archae - 7; Bacteria - 63; Metazoa - 338; Fungi - 103; Plants - 28; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).  protein_id AT1G50500.1p  transcript_id AT1G50500.1  protein_id AT1G50500.1p  transcript_id AT1G50500.1  
At1g50510	chr1:018716578	0.0	W/18716578-18716652,18716729-18716822,18716969-18717079,18717302-18717384,18717672-18717731,18717817-18717877,18718010-18718116,18718201-18718278,18718365-18718410,18718504-18718624,18718736-18718821,18718990-18719060	AT1G50510.1  CDS  gene_syn F11F12.14  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  product indigoidine synthase A family protein  note indigoidine synthase A family protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Indigoidine synthase A like protein (InterPro:IPR007342); Has 1061 Blast hits to 1059 proteins in 316 species: Archae - 0; Bacteria - 457; Metazoa - 58; Fungi - 67; Plants - 19; Viruses - 0; Other Eukaryotes - 460 (source: NCBI BLink).  protein_id AT1G50510.1p  transcript_id AT1G50510.1  protein_id AT1G50510.1p  transcript_id AT1G50510.1  
At1g50520	chr1:018719381	0.0	W/18719381-18720307,18720396-18721070	AT1G50520.1  CDS  gene_syn CYP705A27, F11F12.13, F11F12_13  gene CYP705A27  function member of CYP705A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP705A27; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP705A27; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP705A25; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G50560.1); Has 23807 Blast hits to 23699 proteins in 1258 species: Archae - 23; Bacteria - 2061; Metazoa - 10443; Fungi - 4668; Plants - 5749; Viruses - 6; Other Eukaryotes - 857 (source: NCBI BLink).  protein_id AT1G50520.1p  transcript_id AT1G50520.1  protein_id AT1G50520.1p  transcript_id AT1G50520.1  
At1g50530	chr1:018721565	0.0	C/18721565-18721729,18721311-18721480,18721212-18721221	AT1G50530.1  CDS  gene_syn F11F12.27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT1G50570.2); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G50530.1p  transcript_id AT1G50530.1  protein_id AT1G50530.1p  transcript_id AT1G50530.1  
At1g50550	chr1:018721898	0.0	W/18721898-18722866	AT1G50550.1  pseudogenic_transcript  pseudo  gene_syn CYP705A26P, F17J6.25  gene CYP705A26P  function a cytochrome P450 pseudogene  note pseudogene, cytochrome P450, blastp match of 34% identity and 1.2e-40 P-value to SP|Q42798|C931_SOYBN Cytochrome P450 93A1 (EC 1.14.-.-). (Soybean) {Glycine max}  
At1g50560	chr1:018724275	0.0	W/18724275-18725204,18725287-18725916	AT1G50560.1  CDS  gene_syn CYP705A25, F11F12.12, F11F12_12  gene CYP705A25  function member of CYP705A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP705A25; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP705A25; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP705A27; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G50520.1); Has 23636 Blast hits to 23534 proteins in 1265 species: Archae - 23; Bacteria - 2183; Metazoa - 10317; Fungi - 4518; Plants - 5653; Viruses - 6; Other Eukaryotes - 936 (source: NCBI BLink).  protein_id AT1G50560.1p  transcript_id AT1G50560.1  protein_id AT1G50560.1p  transcript_id AT1G50560.1  
At1g50570	chr1:018726400	0.0	C/18726400-18727566	AT1G50570.1  CDS  gene_syn F11F12.11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT5G55530.3); Has 144 Blast hits to 142 proteins in 44 species: Archae - 0; Bacteria - 17; Metazoa - 24; Fungi - 23; Plants - 65; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G50570.1p  transcript_id AT1G50570.1  protein_id AT1G50570.1p  transcript_id AT1G50570.1  
At1g50570	chr1:018726400	0.0	C/18726400-18727566	AT1G50570.2  CDS  gene_syn F11F12.11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT5G55530.3); Has 144 Blast hits to 142 proteins in 44 species: Archae - 0; Bacteria - 17; Metazoa - 24; Fungi - 23; Plants - 65; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G50570.2p  transcript_id AT1G50570.2  protein_id AT1G50570.2p  transcript_id AT1G50570.2  
At1g50575	chr1:018730081	0.0	C/18730081-18730296,18729595-18729723,18729337-18729521,18728862-18729252	AT1G50575.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process metabolic process|GO:0008152||ISS  go_function carboxy-lyase activity|GO:0016831||ISS  product lysine decarboxylase family protein  note lysine decarboxylase family protein; FUNCTIONS IN: carboxy-lyase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); Has 2104 Blast hits to 2104 proteins in 559 species: Archae - 2; Bacteria - 1299; Metazoa - 4; Fungi - 31; Plants - 102; Viruses - 0; Other Eukaryotes - 666 (source: NCBI BLink).  protein_id AT1G50575.1p  transcript_id AT1G50575.1  protein_id AT1G50575.1p  transcript_id AT1G50575.1  
At1g50580	chr1:018730831	0.0	W/18730831-18732177	AT1G50580.1  CDS  gene_syn F11F12.10, F11F12_10  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyltransferase family protein  note glycosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: glycosyltransferase family protein (TAIR:AT3G29630.1); Has 2982 Blast hits to 2962 proteins in 217 species: Archae - 0; Bacteria - 63; Metazoa - 310; Fungi - 6; Plants - 2592; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G50580.1p  transcript_id AT1G50580.1  protein_id AT1G50580.1p  transcript_id AT1G50580.1  
At1g50590	chr1:018733941	0.0	C/18733941-18734053,18733805-18733854,18733679-18733717,18733277-18733305,18733020-18733198,18732378-18732900	AT1G50590.1  CDS  gene_syn F11F12.9, F11F12_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516|11782485|ISS  product pirin, putative  note pirin, putative; FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pirin, C-terminal (InterPro:IPR008778), Pirin (InterPro:IPR012093), Cupin, RmlC-type (InterPro:IPR011051), Pirin, N-terminal (InterPro:IPR003829); BEST Arabidopsis thaliana protein match is: pirin, putative (TAIR:AT2G43120.1); Has 5371 Blast hits to 5369 proteins in 856 species: Archae - 43; Bacteria - 2836; Metazoa - 63; Fungi - 147; Plants - 68; Viruses - 0; Other Eukaryotes - 2214 (source: NCBI BLink).  protein_id AT1G50590.1p  transcript_id AT1G50590.1  protein_id AT1G50590.1p  transcript_id AT1G50590.1  
At1g50600	chr1:018739346	0.0	C/18739346-18739547,18737398-18738989	AT1G50600.1  CDS  gene_syn F11F12.8, F11F12_8, SCL5  gene SCL5  function Encodes a scarecrow-like protein (SCL5). Member of GRAS gene family.  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product SCL5; transcription factor  note SCL5; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: PAT1 (phytochrome a signal transduction 1); signal transducer/ transcription factor (TAIR:AT5G48150.2); Has 2817 Blast hits to 2271 proteins in 226 species: Archae - 0; Bacteria - 9; Metazoa - 436; Fungi - 17; Plants - 1379; Viruses - 1; Other Eukaryotes - 975 (source: NCBI BLink).  protein_id AT1G50600.1p  transcript_id AT1G50600.1  protein_id AT1G50600.1p  transcript_id AT1G50600.1  
At1g50603	chr1:018740560	0.0	W/18740560-18740661	AT1G50603.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G50603.1p  transcript_id AT1G50603.1  protein_id AT1G50603.1p  transcript_id AT1G50603.1  
At1g50610	chr1:018742171	0.0	W/18742171-18742879,18743066-18743740,18743825-18744501	AT1G50610.1  CDS  gene_syn F11F12.7, F11F12_7  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT3G20190.1); Has 55140 Blast hits to 40519 proteins in 1245 species: Archae - 19; Bacteria - 1845; Metazoa - 14927; Fungi - 2084; Plants - 30367; Viruses - 137; Other Eukaryotes - 5761 (source: NCBI BLink).  protein_id AT1G50610.1p  transcript_id AT1G50610.1  protein_id AT1G50610.1p  transcript_id AT1G50610.1  
At1g50620	chr1:018748537	0.0	W/18748537-18748935,18749015-18749066,18749159-18749335,18749744-18751005	AT1G50620.1  CDS  gene_syn F17J6.14, F17J6_14  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product PHD finger family protein  note PHD finger family protein; FUNCTIONS IN: protein binding, DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT3G20280.1); Has 2980 Blast hits to 2418 proteins in 275 species: Archae - 4; Bacteria - 254; Metazoa - 1526; Fungi - 422; Plants - 163; Viruses - 12; Other Eukaryotes - 599 (source: NCBI BLink).  protein_id AT1G50620.1p  transcript_id AT1G50620.1  protein_id AT1G50620.1p  transcript_id AT1G50620.1  
At1g50630	chr1:018753135	0.0	C/18753135-18753569,18752299-18752748,18751813-18752214	AT1G50630.2  CDS  gene_syn F11F12.5, F11F12_5  product unknown protein  note unknown protein; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20300.1); Has 83 Blast hits to 83 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 79; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G50630.2p  transcript_id AT1G50630.2  protein_id AT1G50630.2p  transcript_id AT1G50630.2  
At1g50630	chr1:018753135	0.0	C/18753135-18753569,18752299-18752748,18751875-18752214,18751654-18751790	AT1G50630.1  CDS  gene_syn F11F12.5, F11F12_5  product unknown protein  note unknown protein; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20300.1); Has 81 Blast hits to 81 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G50630.1p  transcript_id AT1G50630.1  protein_id AT1G50630.1p  transcript_id AT1G50630.1  
At1g50640	chr1:018757602	0.0	C/18757602-18758279	AT1G50640.1  CDS  gene_syn ATERF-3, ATERF3, ERF3, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 3, F11F12.4, F11F12_4  gene ERF3  function encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-3). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.  go_component nucleus|GO:0005634|10715325|IC  go_process regulation of transcription, DNA-dependent|GO:0006355|10715325|IDA  go_process negative regulation of ethylene mediated signaling pathway|GO:0010105|10715325|TAS  go_function DNA binding|GO:0003677|10715325|TAS  go_function transcription factor activity|GO:0003700|10715325|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein binding|GO:0005515|16429262|IPI  go_function transcription repressor activity|GO:0016564|10715325|IDA  product ERF3 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 3); DNA binding / protein binding / transcription factor/ transcription repressor  note ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 3 (ERF3); FUNCTIONS IN: protein binding, transcription repressor activity, transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, negative regulation of ethylene mediated signaling pathway; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ERF7 (ETHYLINE RESPONSE FACTOR 7); DNA binding / protein binding / transcription factor/ transcription repressor (TAIR:AT3G20310.1); Has 3890 Blast hits to 3712 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 3881; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G50640.1p  transcript_id AT1G50640.1  protein_id AT1G50640.1p  transcript_id AT1G50640.1  
At1g50650	chr1:018763773	0.0	C/18763773-18764297	AT1G50650.1  CDS  gene_syn F11F12.3, F11F12_3  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product stigma-specific Stig1 family protein  note stigma-specific Stig1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Stigma-specific protein Stig1 (InterPro:IPR006969); BEST Arabidopsis thaliana protein match is: stigma-specific Stig1 family protein (TAIR:AT4G26880.1); Has 201 Blast hits to 111 proteins in 25 species: Archae - 0; Bacteria - 111; Metazoa - 2; Fungi - 16; Plants - 66; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G50650.1p  transcript_id AT1G50650.1  protein_id AT1G50650.1p  transcript_id AT1G50650.1  
At1g50660	chr1:018771386	0.0	W/18771386-18771826,18772134-18772262,18772778-18774385	AT1G50660.1  CDS  gene_syn F17J6.18, F17J6_18  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20350.1); Has 17678 Blast hits to 12063 proteins in 820 species: Archae - 279; Bacteria - 1267; Metazoa - 9769; Fungi - 1256; Plants - 599; Viruses - 41; Other Eukaryotes - 4467 (source: NCBI BLink).  protein_id AT1G50660.1p  transcript_id AT1G50660.1  protein_id AT1G50660.1p  transcript_id AT1G50660.1  
At1g50670	chr1:018776488	0.0	C/18776488-18776552,18776360-18776405,18776006-18776114,18775741-18775832,18775599-18775661,18775386-18775504,18775223-18775298,18775086-18775142	AT1G50670.1  CDS  gene_syn F17J6.19, F17J6_19  go_process biological_process|GO:0008150||ND  go_function cysteine-type peptidase activity|GO:0008234||ISS  product OTU-like cysteine protease family protein  note OTU-like cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); Has 282 Blast hits to 282 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 88; Plants - 27; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT1G50670.1p  transcript_id AT1G50670.1  protein_id AT1G50670.1p  transcript_id AT1G50670.1  
At1g50680	chr1:018777601	0.0	C/18777601-18778614	AT1G50680.1  CDS  gene_syn F17J6.20, F17J6_20  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Transcriptional factor B3 (InterPro:IPR003340), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT1G51120.1); Has 3000 Blast hits to 2970 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2990; Viruses - 2; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G50680.1p  transcript_id AT1G50680.1  protein_id AT1G50680.1p  transcript_id AT1G50680.1  
At1g50690	chr1:018779768	0.0	W/18779768-18779941,18780064-18780411	AT1G50690.1  CDS  gene_syn F17J6.21, F17J6_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05040.1); Has 30 Blast hits to 30 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G50690.1p  transcript_id AT1G50690.1  protein_id AT1G50690.1p  transcript_id AT1G50690.1  
At1g50691	chr1:018780822	0.0	C/18780822-18781070	AT1G50691.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G50691.1p  transcript_id AT1G50691.1  protein_id AT1G50691.1p  transcript_id AT1G50691.1  
At1g50700	chr1:018782214	0.0	W/18782214-18782895,18782969-18783112,18783214-18783366,18783460-18783575,18783657-18783824,18783903-18784030,18784126-18784225,18784311-18784385	AT1G50700.1  CDS  gene_syn CPK33, F17J6.22, F17J6_22  gene CPK33  function member of Calcium Dependent Protein Kinase  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  go_function kinase activity|GO:0016301||ISS  product CPK33; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase  note CPK33; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CPK9 (calmodulin-domain protein kinase 9); calmodulin-dependent protein kinase/ kinase (TAIR:AT3G20410.1); Has 101129 Blast hits to 94836 proteins in 2788 species: Archae - 68; Bacteria - 7962; Metazoa - 43596; Fungi - 12734; Plants - 16520; Viruses - 441; Other Eukaryotes - 19808 (source: NCBI BLink).  protein_id AT1G50700.1p  transcript_id AT1G50700.1  protein_id AT1G50700.1p  transcript_id AT1G50700.1  
At1g50710	chr1:018787481	0.0	C/18787481-18787615,18787352-18787399,18787079-18787204,18786658-18786990,18786403-18786499,18786207-18786252,18785773-18785866,18785505-18785576,18785371-18785429,18785219-18785287,18785072-18785123,18784885-18784962,18784719-18784781	AT1G50710.1  CDS  gene_syn F17J6.23, F17J6_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 75 Blast hits to 75 proteins in 32 species: Archae - 0; Bacteria - 2; Metazoa - 46; Fungi - 9; Plants - 16; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G50710.1p  transcript_id AT1G50710.1  protein_id AT1G50710.1p  transcript_id AT1G50710.1  
At1g50720	chr1:018789180	0.0	C/18789180-18789644	AT1G50720.1  CDS  gene_syn F17J6.24, F17J6_24  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product stigma-specific Stig1 family protein  note stigma-specific Stig1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Stigma-specific protein Stig1 (InterPro:IPR006969); BEST Arabidopsis thaliana protein match is: stigma-specific Stig1 family protein (TAIR:AT4G26880.1); Has 165 Blast hits to 93 proteins in 23 species: Archae - 0; Bacteria - 86; Metazoa - 1; Fungi - 6; Plants - 65; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G50720.1p  transcript_id AT1G50720.1  protein_id AT1G50720.1p  transcript_id AT1G50720.1  
At1g50730	chr1:018795275	0.0	W/18795275-18795391,18795623-18795805,18796044-18796253,18796577-18796736,18796951-18797283,18797733-18797896,18798077-18798268,18798354-18798443,18798700-18798780,18798870-18799013,18799156-18799238,18799428-18799569,18799663-18799746,18800286-18800447,18800522-18800609,18800965-18801039,18801173-18801239,18801403-18801502,18801638-18801754,18801831-18801887,18801976-18802049,18802819-18803031,18803158-18803263	AT1G50730.1  CDS  gene_syn F4M15.4, F4M15_4  product unknown protein  note unknown protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 182 Blast hits to 175 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 134; Fungi - 2; Plants - 11; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT1G50730.1p  transcript_id AT1G50730.1  protein_id AT1G50730.1p  transcript_id AT1G50730.1  
At1g50735	chr1:018806508	0.0	C/18806508-18807394	AT1G50735.1  mRNA_TE_gene  pseudo  gene_syn SADHU NON-CODING RETROTRANSPOSON, SADHU8-1  gene SADHU8-1  function Member of Sadhu non-coding retrotransposon family  note Transposable element gene  
At1g50740	chr1:018807861	0.0	W/18807861-18808059,18808527-18808614,18808693-18808765	AT1G50740.1  CDS  gene_syn F4M15.3, F4M15_3  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0136, Transmembrane (InterPro:IPR005349); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20510.1); Has 275 Blast hits to 275 proteins in 68 species: Archae - 0; Bacteria - 25; Metazoa - 142; Fungi - 4; Plants - 97; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G50740.1p  transcript_id AT1G50740.1  protein_id AT1G50740.1p  transcript_id AT1G50740.1  
At1g50750	chr1:018811399	0.0	C/18811399-18812050,18811172-18811321,18810710-18811102,18810322-18810495,18809184-18810265	AT1G50750.1  CDS  gene_syn F4M15.2, F4M15_2  product unknown protein  note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G50790.1); Has 1156 Blast hits to 956 proteins in 106 species: Archae - 2; Bacteria - 34; Metazoa - 214; Fungi - 37; Plants - 313; Viruses - 0; Other Eukaryotes - 556 (source: NCBI BLink).  protein_id AT1G50750.1p  transcript_id AT1G50750.1  protein_id AT1G50750.1p  transcript_id AT1G50750.1  
At1g50760	chr1:018815051	0.0	C/18815051-18815260,18814947-18814997	AT1G50760.1  CDS  gene_syn F8A12.1, F8A12_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G50790.1); Has 44 Blast hits to 44 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G50760.1p  transcript_id AT1G50760.1  protein_id AT1G50760.1p  transcript_id AT1G50760.1  
At1g50770	chr1:018819837	0.0	C/18819837-18820503,18818559-18819790	AT1G50770.1  CDS  gene_syn F8A12.2, F8A12_2  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G50790.1); Has 864 Blast hits to 735 proteins in 105 species: Archae - 0; Bacteria - 129; Metazoa - 142; Fungi - 42; Plants - 412; Viruses - 1; Other Eukaryotes - 138 (source: NCBI BLink).  protein_id AT1G50770.1p  transcript_id AT1G50770.1  protein_id AT1G50770.1p  transcript_id AT1G50770.1  
At1g50780	chr1:018821267	0.0	W/18821267-18821344,18821632-18821695,18821786-18821819,18822282-18823077	AT1G50780.1  CDS  gene_syn F8A12.3, F8A12_3  go_component endomembrane system|GO:0012505||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function iron-sulfur cluster binding|GO:0051536||IEA  go_process biological_process|GO:0008150||ND  product electron carrier/ iron-sulfur cluster binding  note electron carrier/ iron-sulfur cluster binding; FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041), 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: MADS-box protein (AGL74 ) (TAIR:AT1G48150.1); Has 83 Blast hits to 82 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 7; Plants - 58; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G50780.1p  transcript_id AT1G50780.1  protein_id AT1G50780.1p  transcript_id AT1G50780.1  
At1g50790	chr1:018824050	0.0	C/18824050-18826488	AT1G50790.1  CDS  gene_syn F8A12.4, F8A12_4  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G50750.1); Has 390 Blast hits to 381 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 13; Fungi - 4; Plants - 345; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G50790.1p  transcript_id AT1G50790.1  protein_id AT1G50790.1p  transcript_id AT1G50790.1  
At1g50800	chr1:018827787	0.0	C/18827787-18828338,18826909-18827040	AT1G50800.1  CDS  gene_syn F8A12.5, F8A12_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G50790.1); Has 34 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 2; Plants - 22; Viruses - 1; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G50800.1p  transcript_id AT1G50800.1  protein_id AT1G50800.1p  transcript_id AT1G50800.1  
At1g50810	chr1:018828868	0.0	W/18828868-18832972	AT1G50810.1  mRNA_TE_gene  pseudo  gene_syn F8A12.25  note Transposable element gene, copia-like retrotransposon family, has a 4.6e-216 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At1g50820	chr1:018833275	0.0	C/18833275-18834861	AT1G50820.1  CDS  gene_syn F8A12.6, F8A12_6  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G50790.1); Has 380 Blast hits to 375 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 380; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G50820.1p  transcript_id AT1G50820.1  protein_id AT1G50820.1p  transcript_id AT1G50820.1  
At1g50830	chr1:018835559	0.0	C/18835559-18837865	AT1G50830.1  CDS  gene_syn F8A12.7, F8A12_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18510.1); Has 654 Blast hits to 646 proteins in 57 species: Archae - 2; Bacteria - 2; Metazoa - 58; Fungi - 9; Plants - 498; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT1G50830.1p  transcript_id AT1G50830.1  protein_id AT1G50830.1p  transcript_id AT1G50830.1  
At1g50840	chr1:018839277	0.0	W/18839277-18839428,18839793-18840528,18840616-18840807,18840965-18841644,18841951-18842407,18842506-18842601,18842885-18842977,18843068-18843262,18843453-18843545,18843640-18843846,18843937-18844026,18844152-18844313	AT1G50840.1  CDS  gene_syn F8A12.8, F8A12_8, POLGAMMA2, polymerase gamma 2  gene POLGAMMA2  function DNA Polymerase gamma2. Dual targeting to mitochondria and plastids due to alternative translation initiation.  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_process DNA replication|GO:0006260||IEA  go_component mitochondrion|GO:0005739|16169894|IDA  go_component chloroplast|GO:0009507|16169894|IDA  go_process DNA replication|GO:0006260||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed DNA polymerase activity|GO:0003887|19182105|TAS  go_function DNA-directed DNA polymerase activity|GO:0003887||ISS  product POLGAMMA2 (polymerase gamma 2); DNA binding / DNA-directed DNA polymerase  note polymerase gamma 2 (POLGAMMA2); FUNCTIONS IN: DNA-directed DNA polymerase activity, DNA binding; INVOLVED IN: DNA replication, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), DNA-directed DNA polymerase, family A (InterPro:IPR001098), DNA polymerase A (InterPro:IPR002298), 3 -5  exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: POLGAMMA1 (polymerase gamma 1); 3 -5  exonuclease/ DNA binding / DNA-directed DNA polymerase/ nucleic acid binding (TAIR:AT3G20540.1); Has 8661 Blast hits to 7412 proteins in 1409 species: Archae - 0; Bacteria - 3634; Metazoa - 134; Fungi - 0; Plants - 67; Viruses - 157; Other Eukaryotes - 4669 (source: NCBI BLink).  protein_id AT1G50840.1p  transcript_id AT1G50840.1  protein_id AT1G50840.1p  transcript_id AT1G50840.1  
At1g50850	chr1:018847410	0.0	C/18847410-18849654	AT1G50850.1  mRNA_TE_gene  pseudo  gene_syn F8A12.27, F8A12_27  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 9.6e-44 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At1g50860	chr1:018850511	0.0	C/18850511-18854356	AT1G50860.1  mRNA_TE_gene  pseudo  gene_syn F8A12.26  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 1.8e-152 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At1g50870	chr1:018855147	0.0	W/18855147-18856337	AT1G50870.1  CDS  gene_syn F8A12.9, F8A12_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G47790.1); Has 962 Blast hits to 941 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 962; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G50870.1p  transcript_id AT1G50870.1  protein_id AT1G50870.1p  transcript_id AT1G50870.1  
At1g50880	chr1:018860837	0.0	W/18860837-18861133,18861181-18861290,18861457-18861561,18861655-18861982	AT1G50880.1  CDS  gene_syn F8A12.10, F8A12_10  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G50870.1); Has 406 Blast hits to 344 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 406; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G50880.1p  transcript_id AT1G50880.1  protein_id AT1G50880.1p  transcript_id AT1G50880.1  
At1g50890	chr1:018865039	0.0	C/18865039-18865752,18864618-18864809,18863465-18864124,18863278-18863383,18862582-18863177,18862295-18862492	AT1G50890.1  CDS  gene_syn F8A12.11, F8A12_11  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: TOR1 (TORTIFOLIA 1); microtubule binding (TAIR:AT4G27060.1); Has 112 Blast hits to 107 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 78; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G50890.1p  transcript_id AT1G50890.1  protein_id AT1G50890.1p  transcript_id AT1G50890.1  
At1g50900	chr1:018866272	0.0	W/18866272-18866541,18866757-18867014	AT1G50900.1  CDS  gene_syn F8A12.12, F8A12_12  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G50900.1p  transcript_id AT1G50900.1  protein_id AT1G50900.1p  transcript_id AT1G50900.1  
At1g50910	chr1:018869693	0.0	C/18869693-18869839,18869430-18869542,18869267-18869345,18869161-18869189,18868985-18869078,18868792-18868881,18868508-18868703,18868090-18868278,18867643-18867831,18867083-18867459	AT1G50910.1  CDS  gene_syn F8A12.13, F8A12_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 929 Blast hits to 636 proteins in 153 species: Archae - 2; Bacteria - 101; Metazoa - 432; Fungi - 177; Plants - 19; Viruses - 5; Other Eukaryotes - 193 (source: NCBI BLink).  protein_id AT1G50910.1p  transcript_id AT1G50910.1  protein_id AT1G50910.1p  transcript_id AT1G50910.1  
At1g50920	chr1:018870555	0.0	W/18870555-18872570	AT1G50920.1  CDS  gene_syn F8A12.14, F8A12_14  go_component membrane|GO:0016020|17432890|IDA  go_function GTP binding|GO:0005525||IEA  go_function nucleotide binding|GO:0000166||ISS  product GTP-binding protein-related  note GTP-binding protein-related; FUNCTIONS IN: GTP binding, nucleotide binding; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073), Nucleolar GTP-binding 1 (InterPro:IPR010674), NOG, C-terminal (InterPro:IPR012973); BEST Arabidopsis thaliana protein match is: GTP-binding protein-related (TAIR:AT1G10300.1); Has 6304 Blast hits to 6137 proteins in 1196 species: Archae - 232; Bacteria - 2737; Metazoa - 1044; Fungi - 314; Plants - 177; Viruses - 0; Other Eukaryotes - 1800 (source: NCBI BLink).  protein_id AT1G50920.1p  transcript_id AT1G50920.1  protein_id AT1G50920.1p  transcript_id AT1G50920.1  
At1g50930	chr1:018876898	0.0	W/18876898-18877287,18877377-18877448,18877578-18877706	AT1G50930.1  CDS  gene_syn F8A12.15, F8A12_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20557.1); Has 194 Blast hits to 192 proteins in 53 species: Archae - 0; Bacteria - 2; Metazoa - 78; Fungi - 10; Plants - 20; Viruses - 5; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT1G50930.1p  transcript_id AT1G50930.1  protein_id AT1G50930.1p  transcript_id AT1G50930.1  
At1g50940	chr1:018879838	0.0	C/18879838-18879939,18879354-18879536,18879064-18879275,18878833-18878996,18878592-18878750,18878431-18878483,18878203-18878343,18878038-18878115	AT1G50940.1  CDS  gene_syn ETFALPHA, F8A12.16, F8A12_16, electron transfer flavoprotein alpha  gene ETFALPHA  function Encodes the electron transfer flavoprotein ETF alpha, a putative subunit of the mitochondrial electron transfer flavoprotein complex (ETF beta is At5g43430.1) in Arabidopsis. Mutations of the ETF beta gene results in accelerated senescence and early death compared to wild-type during extended darkness.  go_function electron carrier activity|GO:0009055||IEA  go_function FAD binding|GO:0050660||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|14764908|IDA  product ETFALPHA (electron transfer flavoprotein alpha); FAD binding / electron carrier  note electron transfer flavoprotein alpha (ETFALPHA); FUNCTIONS IN: electron carrier activity, FAD binding; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Electron transfer flavoprotein, alpha subunit, C-terminal (InterPro:IPR014731), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Electron transfer flavoprotein, alpha/beta-subunit, N-terminal (InterPro:IPR014730), Electron transfer flavoprotein, alpha subunit (InterPro:IPR001308), Electron transfer flavoprotein, alpha subunit, C-terminal, conserved site (InterPro:IPR018206); Has 5341 Blast hits to 5333 proteins in 934 species: Archae - 81; Bacteria - 2501; Metazoa - 143; Fungi - 93; Plants - 28; Viruses - 0; Other Eukaryotes - 2495 (source: NCBI BLink).  protein_id AT1G50940.1p  transcript_id AT1G50940.1  protein_id AT1G50940.1p  transcript_id AT1G50940.1  
At1g50950	chr1:018880465	0.0	W/18880465-18880505,18880776-18880866,18881011-18881105,18881255-18881312,18881560-18881747,18881851-18881908,18882250-18882290,18882399-18882473,18882577-18882633,18882767-18882833,18882973-18883116,18883227-18883448,18883523-18883684,18883799-18883876,18883966-18884043	AT1G50950.1  CDS  gene_syn F8A12.17, F8A12_17  go_process cell redox homeostasis|GO:0045454||IEA  product thioredoxin-related  note thioredoxin-related; INVOLVED IN: cell redox homeostasis; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336), Protein of unknown function DUF1692 (InterPro:IPR012936); BEST Arabidopsis thaliana protein match is: ATPDIL5-3 (PDI-LIKE 5-3); protein disulfide isomerase (TAIR:AT3G20560.1); Has 3743 Blast hits to 2654 proteins in 250 species: Archae - 0; Bacteria - 10; Metazoa - 2086; Fungi - 591; Plants - 511; Viruses - 3; Other Eukaryotes - 542 (source: NCBI BLink).  protein_id AT1G50950.1p  transcript_id AT1G50950.1  protein_id AT1G50950.1p  transcript_id AT1G50950.1  
At1g50954	chr1:018886533	0.0	C/18886533-18886628	AT1G50954.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G50954.1p  transcript_id AT1G50954.1  protein_id AT1G50954.1p  transcript_id AT1G50954.1  
At1g50960	chr1:018889549	0.0	W/18889549-18890006,18890514-18890835,18891489-18891719	AT1G50960.1  CDS  gene_syn ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 7, ATGA2OX7, F8A12.18, F8A12_18, GA2OX7, GIBBERELLIN 2-OXIDASE 7  gene GA2OX7  function Encodes a protein with gibberellin 2-oxidase activity which acts specifically on C-20 gibberellins. DDF1 binds to GA2OX7 and regulates its expression in response to salt stress.  go_component chloroplast|GO:0009507||IEA  go_process response to salt stress|GO:0009651|18643985|IGI  go_process gibberellin biosynthetic process|GO:0009686||ISS  go_function gibberellin 2-beta-dioxygenase activity|GO:0045543|12509528|IDA  product GA2OX7 (GIBBERELLIN 2-OXIDASE 7); gibberellin 2-beta-dioxygenase  note GIBBERELLIN 2-OXIDASE 7 (GA2OX7); FUNCTIONS IN: gibberellin 2-beta-dioxygenase activity; INVOLVED IN: response to salt stress, gibberellin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: hypocotyl; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: GA2OX8 (GIBBERELLIN 2-OXIDASE 8); gibberellin 2-beta-dioxygenase (TAIR:AT4G21200.1); Has 5736 Blast hits to 5713 proteins in 674 species: Archae - 0; Bacteria - 696; Metazoa - 117; Fungi - 590; Plants - 3007; Viruses - 0; Other Eukaryotes - 1326 (source: NCBI BLink).  protein_id AT1G50960.1p  transcript_id AT1G50960.1  protein_id AT1G50960.1p  transcript_id AT1G50960.1  
At1g50970	chr1:018896323	0.0	W/18896323-18896371,18896477-18896628,18896713-18896863,18897086-18897156,18897357-18897481,18897766-18897926,18898006-18898147,18898399-18898462,18898672-18898779,18898882-18898986,18899052-18899111,18899416-18899478,18899558-18899584,18899672-18899737,18899809-18899904,18899999-18900268	AT1G50970.1  CDS  gene_syn F8A12.19, F8A12_19  go_component endomembrane system|GO:0012505||IEA  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product membrane trafficking VPS53 family protein  note membrane trafficking VPS53 family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Vps53-like, N-terminal (InterPro:IPR007234); BEST Arabidopsis thaliana protein match is: HIT1 (HEAT-INTOLERANT 1); transporter (TAIR:AT1G50500.1); Has 433 Blast hits to 308 proteins in 142 species: Archae - 2; Bacteria - 19; Metazoa - 193; Fungi - 111; Plants - 34; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT1G50970.1p  transcript_id AT1G50970.1  protein_id AT1G50970.1p  transcript_id AT1G50970.1  
At1g50980	chr1:018901834	0.0	C/18901834-18902057,18901516-18901776,18901311-18901439,18901152-18901239,18900924-18901061,18900541-18900813	AT1G50980.1  CDS  gene_syn F8A12.20, F8A12_20  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56800.1); Has 757 Blast hits to 735 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 752; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G50980.1p  transcript_id AT1G50980.1  protein_id AT1G50980.1p  transcript_id AT1G50980.1  
At1g50990	chr1:018902930	0.0	W/18902930-18903289,18903362-18903497,18903583-18903716,18903813-18903918,18904236-18904321,18904414-18904875,18904965-18905204	AT1G50990.1  CDS  gene_syn F8A12.21, F8A12_21  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function binding|GO:0005488||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  product protein kinase-related  note protein kinase-related; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, binding, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tetratricopeptide-like helical (InterPro:IPR011990), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: BSK1 (BR-SIGNALING KINASE 1); ATP binding / binding / kinase/ protein kinase/ protein tyrosine kinase (TAIR:AT4G35230.1); Has 23463 Blast hits to 23164 proteins in 917 species: Archae - 8; Bacteria - 1514; Metazoa - 7158; Fungi - 423; Plants - 12375; Viruses - 92; Other Eukaryotes - 1893 (source: NCBI BLink).  protein_id AT1G50990.1p  transcript_id AT1G50990.1  protein_id AT1G50990.1p  transcript_id AT1G50990.1  
At1g51000	chr1:018909924	0.0	W/18909924-18910138,18910273-18910282	AT1G51000.1  CDS  gene_syn F8A12.22, F8A12_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51010.1); Has 11 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G51000.1p  transcript_id AT1G51000.1  protein_id AT1G51000.1p  transcript_id AT1G51000.1  
At1g51010	chr1:018911597	0.0	W/18911597-18911841,18913272-18913542	AT1G51010.1  CDS  gene_syn F23H24.12, F23H24_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51030.1); Has 249 Blast hits to 225 proteins in 65 species: Archae - 10; Bacteria - 66; Metazoa - 48; Fungi - 7; Plants - 14; Viruses - 2; Other Eukaryotes - 102 (source: NCBI BLink).  protein_id AT1G51010.1p  transcript_id AT1G51010.1  protein_id AT1G51010.1p  transcript_id AT1G51010.1  
At1g51030	chr1:018915179	0.0	W/18915179-18915385,18917601-18917774	AT1G51030.1  CDS  gene_syn F23H24.11, F23H24_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51010.1); Has 27 Blast hits to 24 proteins in 10 species: Archae - 5; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G51030.1p  transcript_id AT1G51030.1  protein_id AT1G51030.1p  transcript_id AT1G51030.1  
At1g51040	chr1:018920658	0.0	W/18920658-18920998,18921146-18921221,18921323-18921367,18921709-18921881,18921978-18922173,18922300-18922416,18922570-18922778,18922894-18923314	AT1G51040.1  CDS  gene_syn F23H24.10, F23H24_10  go_component chloroplast|GO:0009507|15028209|IDA  go_process signal transduction|GO:0007165|15358268|ISS  go_process phosphoinositide biosynthetic process|GO:0046489||ISS  go_function 1-phosphatidylinositol 4-kinase activity|GO:0004430||ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product phosphatidylinositol 4-kinase, putative  note phosphatidylinositol 4-kinase, putative; FUNCTIONS IN: 1-phosphatidylinositol 4-kinase activity, phosphoinositide binding; INVOLVED IN: signal transduction, phosphoinositide biosynthetic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3- and 4-kinase, catalytic (InterPro:IPR000403), Phosphatidylinositol Kinase (InterPro:IPR015433), Phosphatidylinositol 3- and 4-kinase, conserved site (InterPro:IPR018936), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATPI4K ALPHA; 1-phosphatidylinositol 4-kinase/ inositol or phosphatidylinositol kinase (TAIR:AT1G49340.2); Has 1564 Blast hits to 1541 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 810; Fungi - 267; Plants - 88; Viruses - 4; Other Eukaryotes - 395 (source: NCBI BLink).  protein_id AT1G51040.1p  transcript_id AT1G51040.1  protein_id AT1G51040.1p  transcript_id AT1G51040.1  
At1g51050	chr1:018923355	0.0	C/18923355-18923966	AT1G51050.1  pseudogenic_transcript  pseudo  gene_syn F23H24.14  note pseudogene, hypothetical protein  
At1g51055	chr1:018926303	0.0	C/18926303-18926315,18926159-18926211,18925669-18925812,18925286-18925561	AT1G51055.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56800.1); Has 247 Blast hits to 244 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 247; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G51055.1p  transcript_id AT1G51055.1  protein_id AT1G51055.1p  transcript_id AT1G51055.1  
At1g51060	chr1:018926948	0.0	W/18926948-18927136,18927234-18927443	AT1G51060.1  CDS  gene_syn F23H24.9, F23H24_9, HTA10  gene HTA10  function Encodes HTA10, a histone H2A protein.  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product HTA10; DNA binding  note HTA10; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleolus, cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: HTA13; DNA binding (TAIR:AT3G20670.1); Has 3274 Blast hits to 3274 proteins in 307 species: Archae - 0; Bacteria - 0; Metazoa - 2203; Fungi - 241; Plants - 450; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink).  protein_id AT1G51060.1p  transcript_id AT1G51060.1  protein_id AT1G51060.1p  transcript_id AT1G51060.1  
At1g51070	chr1:018928018	0.0	W/18928018-18928130,18928693-18928755,18928859-18928936,18929019-18929181,18929250-18929513	AT1G51070.1  CDS  gene_syn F23H24.8, F23H24_8  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: ILR3 (iaa-leucine resistant3); DNA binding / transcription factor (TAIR:AT5G54680.1); Has 513 Blast hits to 498 proteins in 83 species: Archae - 4; Bacteria - 26; Metazoa - 75; Fungi - 9; Plants - 282; Viruses - 2; Other Eukaryotes - 115 (source: NCBI BLink).  protein_id AT1G51070.1p  transcript_id AT1G51070.1  protein_id AT1G51070.1p  transcript_id AT1G51070.1  
At1g51080	chr1:018929883	0.0	C/18929883-18930740	AT1G51080.1  CDS  gene_syn F23H24.7, F23H24_7  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 11 growth stages; Has 93 Blast hits to 90 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 8; Plants - 14; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT1G51080.1p  transcript_id AT1G51080.1  protein_id AT1G51080.1p  transcript_id AT1G51080.1  
At1g51085	chr1:018931466	0.0	C/18931466-18931691	AT1G51085.1  mRNA_TE_gene  pseudo  gene_syn F23H24.19  note Transposable element gene, pseudogene, hypothetical protein  
At1g51090	chr1:018932985	0.0	W/18932985-18932996,18933122-18933203,18933326-18933747	AT1G51090.1  CDS  gene_syn F23H24.15, F23H24_15  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: metal ion binding (TAIR:AT4G16380.1); Has 2088 Blast hits to 1362 proteins in 268 species: Archae - 0; Bacteria - 571; Metazoa - 270; Fungi - 137; Plants - 643; Viruses - 138; Other Eukaryotes - 329 (source: NCBI BLink).  protein_id AT1G51090.1p  transcript_id AT1G51090.1  protein_id AT1G51090.1p  transcript_id AT1G51090.1  
At1g51100	chr1:018934342	0.0	W/18934342-18934977	AT1G51100.1  CDS  gene_syn F23H24.6, F23H24_6  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 14 Blast hits to 14 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G51100.1p  transcript_id AT1G51100.1  protein_id AT1G51100.1p  transcript_id AT1G51100.1  
At1g51110	chr1:018935380	0.0	W/18935380-18935673,18935743-18935796,18935908-18935982,18936083-18936205,18936278-18936469,18936552-18936635,18936723-18936815,18936903-18936956,18937039-18937118,18937202-18937309,18937412-18937484	AT1G51110.1  CDS  gene_syn AT1G51115, F23H24.16, F23H24_16  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process tryptophan biosynthetic process|GO:0000162||IEA  go_function structural molecule activity|GO:0005198||IEA  go_function structural molecule activity|GO:0005198||ISS  product plastid-lipid associated protein PAP / fibrillin family protein  note plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: tryptophan biosynthetic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAP fibrillin (InterPro:IPR006843); BEST Arabidopsis thaliana protein match is: plastid-lipid associated protein PAP / fibrillin family protein (TAIR:AT3G26070.1); Has 218 Blast hits to 218 proteins in 58 species: Archae - 0; Bacteria - 56; Metazoa - 0; Fungi - 0; Plants - 152; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G51110.1p  transcript_id AT1G51110.1  protein_id AT1G51110.1p  transcript_id AT1G51110.1  
At1g51120	chr1:018938091	0.0	W/18938091-18939149	AT1G51120.1  CDS  gene_syn F23H24.5, F23H24_5  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Transcriptional factor B3 (InterPro:IPR003340), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT1G50680.1); Has 2364 Blast hits to 2359 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2350; Viruses - 4; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G51120.1p  transcript_id AT1G51120.1  protein_id AT1G51120.1p  transcript_id AT1G51120.1  
At1g51130	chr1:018941338	0.0	C/18941338-18941560,18941168-18941248,18940765-18941017,18940578-18940668,18940005-18940221,18939829-18939920,18939480-18939734	AT1G51130.1  CDS  gene_syn F23H24.4, F23H24_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Nse4 (InterPro:IPR014854); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20760.1); Has 200 Blast hits to 198 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 63; Fungi - 88; Plants - 37; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G51130.1p  transcript_id AT1G51130.1  protein_id AT1G51130.1p  transcript_id AT1G51130.1  
At1g51140	chr1:018945103	0.0	C/18945103-18945613,18944531-18944823,18944260-18944415,18944088-18944153,18943935-18944003,18943802-18943846	AT1G51140.1  CDS  gene_syn F23H24.3, F23H24_3  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT2G42280.1); Has 1045 Blast hits to 1045 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 3; Plants - 1030; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G51140.1p  transcript_id AT1G51140.1  protein_id AT1G51140.1p  transcript_id AT1G51140.1  
At1g51150	chr1:018949035	0.0	C/18949035-18949290,18948681-18948926,18948370-18948527	AT1G51150.1  CDS  gene_syn DegP protease 6, DegP6, F11M15.1  gene DegP6  function Encodes a putative DegP protease.  go_component chloroplast|GO:0009507||IEA  go_process proteolysis|GO:0006508||IEA  go_function catalytic activity|GO:0003824||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type endopeptidase activity|GO:0004252||ISS  go_function serine-type peptidase activity|GO:0008236||ISS  product DegP6 (DegP protease 6); catalytic/ serine-type endopeptidase/ serine-type peptidase  note DegP protease 6 (DegP6); FUNCTIONS IN: serine-type peptidase activity, catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Serine endopeptidase DegP2 (InterPro:IPR015724), Peptidase, trypsin-like serine and cysteine (InterPro:IPR009003), Peptidase S1 and S6, chymotrypsin/Hap (InterPro:IPR001254); BEST Arabidopsis thaliana protein match is: DegP protease family (TAIR:AT5G54745.1); Has 361 Blast hits to 361 proteins in 81 species: Archae - 4; Bacteria - 120; Metazoa - 8; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).  protein_id AT1G51150.1p  transcript_id AT1G51150.1  protein_id AT1G51150.1p  transcript_id AT1G51150.1  
At1g51160	chr1:018950057	0.0	W/18950057-18950280,18950431-18950545,18951285-18951403,18951509-18951560	AT1G51160.1  CDS  gene_syn F23H24.18, F23H24_18  go_component cis-Golgi network|GO:0005801||IEA  go_process transport|GO:0006810||IEA  go_process ER to Golgi vesicle-mediated transport|GO:0006888||IEA  go_function molecular_function|GO:0003674||ND  product synbindin, putative  note synbindin, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, ER to Golgi vesicle-mediated transport; LOCATED IN: cis-Golgi network; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sybindin-like protein (InterPro:IPR007233), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: synbindin, putative (TAIR:AT5G02280.1); Has 509 Blast hits to 509 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 209; Fungi - 149; Plants - 57; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).  protein_id AT1G51160.1p  transcript_id AT1G51160.1  protein_id AT1G51160.1p  transcript_id AT1G51160.1  
At1g51160	chr1:018950057	0.0	W/18950057-18950280,18950431-18950545,18951285-18951403,18951509-18951560	AT1G51160.2  CDS  gene_syn F23H24.18, F23H24_18  go_component cis-Golgi network|GO:0005801||IEA  go_process transport|GO:0006810||IEA  go_process ER to Golgi vesicle-mediated transport|GO:0006888||IEA  go_function molecular_function|GO:0003674||ND  product synbindin, putative  note synbindin, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, ER to Golgi vesicle-mediated transport; LOCATED IN: cis-Golgi network; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sybindin-like protein (InterPro:IPR007233), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: synbindin, putative (TAIR:AT5G02280.1); Has 509 Blast hits to 509 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 209; Fungi - 149; Plants - 57; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).  protein_id AT1G51160.2p  transcript_id AT1G51160.2  protein_id AT1G51160.2p  transcript_id AT1G51160.2  
At1g51170	chr1:018953625	0.0	C/18953625-18954839	AT1G51170.1  CDS  gene_syn F23H24.1  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G20830.1); Has 59017 Blast hits to 50992 proteins in 1446 species: Archae - 17; Bacteria - 5620; Metazoa - 26965; Fungi - 7009; Plants - 5933; Viruses - 161; Other Eukaryotes - 13312 (source: NCBI BLink).  protein_id AT1G51170.1p  transcript_id AT1G51170.1  protein_id AT1G51170.1p  transcript_id AT1G51170.1  
At1g51172	chr1:018963205	0.0	W/18963205-18963769,18963867-18964535,18964610-18964737,18964810-18965016,18965095-18965571	AT1G51172.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF601 (InterPro:IPR006736); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G46696.1).  protein_id AT1G51172.1p  transcript_id AT1G51172.1  protein_id AT1G51172.1p  transcript_id AT1G51172.1  
At1g51175	chr1:018965955	0.0	C/18965955-18971576	AT1G51175.1  mRNA_TE_gene  pseudo  gene_syn F11M15.5  note Transposable element gene, gypsy-like retrotransposon family, has a 3.2e-181 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At1g51190	chr1:018977517	0.0	W/18977517-18977655,18977908-18978355,18978444-18978526,18978680-18978688,18978795-18978883,18978981-18979054,18979179-18979306,18979569-18980305	AT1G51190.1  CDS  gene_syn F11M15.6, F11M15_6, PLETHORA 2, PLT2  gene PLT2  function Encodes a member of the AINTEGUMENTA-like (AIL) subclass of the AP2/EREBP family of transcription factors and is essential for quiescent center (QC) specification and stem cell activity. It is a key effector for establishment of the stem cell niche during embryonic pattern formation. It is transcribed in response to auxin accumulation and is dependent on auxin response transcription factors.  go_component nucleus|GO:0005634|15454085|NAS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process pattern specification process|GO:0007389|15454085|IMP  go_process stem cell maintenance|GO:0019827|15454085|IMP  go_process root development|GO:0048364|15454085|IMP  go_process root development|GO:0048364|17960244|IGI  go_function transcription factor activity|GO:0003700|11118137|ISS  product PLT2 (PLETHORA 2); transcription factor  note PLETHORA 2 (PLT2); FUNCTIONS IN: transcription factor activity; INVOLVED IN: stem cell maintenance, regulation of transcription, DNA-dependent, root development, pattern specification process; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: PLT1 (PLETHORA 1); transcription factor (TAIR:AT3G20840.1); Has 4827 Blast hits to 3338 proteins in 202 species: Archae - 0; Bacteria - 4; Metazoa - 4; Fungi - 0; Plants - 4750; Viruses - 2; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT1G51190.1p  transcript_id AT1G51190.1  protein_id AT1G51190.1p  transcript_id AT1G51190.1  
At1g51200	chr1:018985690	0.0	W/18985690-18986211	AT1G51200.1  CDS  gene_syn F11M15.7, F11M15_7  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product zinc finger (AN1-like) family protein  note zinc finger (AN1-like) family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: zinc finger (AN1-like) family protein (TAIR:AT2G36320.1); Has 756 Blast hits to 741 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 383; Fungi - 2; Plants - 270; Viruses - 6; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT1G51200.1p  transcript_id AT1G51200.1  protein_id AT1G51200.1p  transcript_id AT1G51200.1  
At1g51200	chr1:018985690	0.0	W/18985690-18986211	AT1G51200.2  CDS  gene_syn F11M15.7, F11M15_7  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product zinc finger (AN1-like) family protein  note zinc finger (AN1-like) family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: zinc finger (AN1-like) family protein (TAIR:AT2G36320.1); Has 756 Blast hits to 741 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 383; Fungi - 2; Plants - 270; Viruses - 6; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT1G51200.2p  transcript_id AT1G51200.2  protein_id AT1G51200.2p  transcript_id AT1G51200.2  
At1g51210	chr1:018987809	0.0	W/18987809-18989110	AT1G51210.1  CDS  gene_syn F11M15.8, F11M15_8  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, E expanded cotyledon stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT5G03490.1); Has 3250 Blast hits to 3206 proteins in 212 species: Archae - 0; Bacteria - 10; Metazoa - 520; Fungi - 8; Plants - 2694; Viruses - 5; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G51210.1p  transcript_id AT1G51210.1  protein_id AT1G51210.1p  transcript_id AT1G51210.1  
At1g51220	chr1:018991453	0.0	C/18991453-18992034,18989925-18990356	AT1G51220.1  CDS  gene_syn F11M15.9, F11M15_9  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) protein (WIP5)  note zinc finger (C2H2 type) protein (WIP5); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) protein (WIP4) (TAIR:AT3G20880.1); Has 16679 Blast hits to 10041 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 15859; Fungi - 80; Plants - 379; Viruses - 0; Other Eukaryotes - 361 (source: NCBI BLink).  protein_id AT1G51220.1p  transcript_id AT1G51220.1  protein_id AT1G51220.1p  transcript_id AT1G51220.1  
At1g51230	chr1:018997057	0.0	C/18997057-18997434	AT1G51230.1  CDS  gene_syn F11M15.29, F11M15_29  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51240.1); Has 18 Blast hits to 18 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G51230.1p  transcript_id AT1G51230.1  protein_id AT1G51230.1p  transcript_id AT1G51230.1  
At1g51240	chr1:019000509	0.0	C/19000509-19000892	AT1G51240.1  CDS  gene_syn F11M15.10, F11M15_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51250.1); Has 16 Blast hits to 16 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G51240.1p  transcript_id AT1G51240.1  protein_id AT1G51240.1p  transcript_id AT1G51240.1  
At1g51250	chr1:019001733	0.0	C/19001733-19002152	AT1G51250.1  CDS  gene_syn F11M15.11, F11M15_11  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51240.1); Has 16 Blast hits to 16 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G51250.1p  transcript_id AT1G51250.1  protein_id AT1G51250.1p  transcript_id AT1G51250.1  
At1g51260	chr1:019005432	0.0	C/19005432-19005512,19005133-19005255,19005011-19005050,19004860-19004933,19004721-19004780,19004556-19004633,19004308-19004466,19004099-19004224,19003912-19004004,19003743-19003829,19003460-19003669	AT1G51260.1  CDS  gene_syn F11M15.12, F11M15_12, LPAT3  gene LPAT3  function ACYL-COA:1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE, PUTATIVE SIMILAR TO ACYL-COA:1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE GI:4583544 FROM [BRASSICA NAPUS]  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_process metabolic process|GO:0008152||ISS  go_function 1-acylglycerol-3-phosphate O-acyltransferase activity|GO:0003841|15772283|IDA  go_function 1-acylglycerol-3-phosphate O-acyltransferase activity|GO:0003841||ISS  product LPAT3; 1-acylglycerol-3-phosphate O-acyltransferase  note LPAT3; FUNCTIONS IN: 1-acylglycerol-3-phosphate O-acyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: LPAT2; 1-acylglycerol-3-phosphate O-acyltransferase (TAIR:AT3G57650.1); Has 1360 Blast hits to 1360 proteins in 372 species: Archae - 0; Bacteria - 530; Metazoa - 440; Fungi - 138; Plants - 75; Viruses - 2; Other Eukaryotes - 175 (source: NCBI BLink).  protein_id AT1G51260.1p  transcript_id AT1G51260.1  protein_id AT1G51260.1p  transcript_id AT1G51260.1  
At1g51270	chr1:019007577	0.0	W/19007577-19007628,19007826-19007896,19007988-19008069,19008189-19008304,19008424-19008582,19008685-19008766,19008859-19008929,19009006-19009087,19009194-19009309,19009397-19009555,19009686-19010206,19010412-19010473,19010885-19011225	AT1G51270.3  CDS  gene_syn F11M15.13, F11M15_13  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function structural molecule activity|GO:0005198||IEA  go_function structural molecule activity|GO:0005198||ISS  product structural molecule/ transmembrane receptor  note structural molecule/ transmembrane receptor; FUNCTIONS IN: transmembrane receptor activity, structural molecule activity; INVOLVED IN: signal transduction, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: transmembrane receptor (TAIR:AT5G45000.1).  protein_id AT1G51270.3p  transcript_id AT1G51270.3  protein_id AT1G51270.3p  transcript_id AT1G51270.3  
At1g51270	chr1:019007577	0.0	W/19007577-19007628,19007826-19007896,19007988-19008069,19008189-19008304,19008424-19008582,19008685-19008766,19008859-19008929,19009006-19009087,19009194-19009309,19009397-19009555,19009686-19010206,19010412-19010496	AT1G51270.2  CDS  gene_syn F11M15.13, F11M15_13  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function structural molecule activity|GO:0005198||IEA  go_function structural molecule activity|GO:0005198||ISS  product structural molecule/ transmembrane receptor  note structural molecule/ transmembrane receptor; FUNCTIONS IN: transmembrane receptor activity, structural molecule activity; INVOLVED IN: signal transduction, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: transmembrane receptor (TAIR:AT5G45000.1); Has 1643 Blast hits to 1405 proteins in 174 species: Archae - 0; Bacteria - 0; Metazoa - 274; Fungi - 143; Plants - 1184; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT1G51270.2p  transcript_id AT1G51270.2  protein_id AT1G51270.2p  transcript_id AT1G51270.2  
At1g51270	chr1:019008009	0.0	W/19008009-19008069,19008189-19008304,19008424-19008582,19008685-19008766,19008859-19008929,19009006-19009087,19009194-19009309,19009397-19009555,19009686-19010411	AT1G51270.1  CDS  gene_syn F11M15.13, F11M15_13  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function structural molecule activity|GO:0005198||IEA  go_function structural molecule activity|GO:0005198||ISS  product structural molecule/ transmembrane receptor  note structural molecule/ transmembrane receptor; FUNCTIONS IN: transmembrane receptor activity, structural molecule activity; INVOLVED IN: signal transduction, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: PVA12 (PLANT VAP HOMOLOG 12); structural molecule (TAIR:AT2G45140.1); Has 1633 Blast hits to 1398 proteins in 172 species: Archae - 0; Bacteria - 0; Metazoa - 274; Fungi - 143; Plants - 1174; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT1G51270.1p  transcript_id AT1G51270.1  protein_id AT1G51270.1p  transcript_id AT1G51270.1  
At1g51290	chr1:019012173	0.0	W/19012173-19013306	AT1G51290.1  CDS  gene_syn F11M15.14, F11M15_14  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product F-box family protein (FBX10)  note F-box family protein (FBX10); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (FBX11) (TAIR:AT1G51320.1); Has 888 Blast hits to 867 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 887; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G51290.1p  transcript_id AT1G51290.1  protein_id AT1G51290.1p  transcript_id AT1G51290.1  
At1g51300	chr1:019016094	0.0	C/19016094-19016103,19015773-19015917,19015593-19015629,19015380-19015506,19015226-19015336,19015000-19015132,19014260-19014335	AT1G51300.1  CDS  gene_syn F11M15.15, F11M15_15  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product acyl-protein thioesterase-related  note acyl-protein thioesterase-related; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Phospholipase/carboxylesterase (InterPro:IPR003140); BEST Arabidopsis thaliana protein match is: phospholipase/carboxylesterase family protein (TAIR:AT3G15650.1); Has 308 Blast hits to 306 proteins in 84 species: Archae - 0; Bacteria - 51; Metazoa - 169; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G51300.1p  transcript_id AT1G51300.1  protein_id AT1G51300.1p  transcript_id AT1G51300.1  
At1g51310	chr1:019021382	0.0	C/19021382-19021735,19021228-19021302,19021064-19021117,19020909-19020987,19020657-19020784,19020406-19020489,19020186-19020269,19019950-19020101,19019589-19019739,19019185-19019517	AT1G51310.1  CDS  gene_syn F11M15.16, F11M15_16  go_component cytoplasm|GO:0005737||IEA  go_component chloroplast|GO:0009507||IEA  go_process tRNA processing|GO:0008033||IEA  go_function tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity|GO:0004808||IEA  go_process RNA processing|GO:0006396||ISS  go_function tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity|GO:0004808||ISS  product tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase  note tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; FUNCTIONS IN: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity; INVOLVED IN: tRNA processing, RNA processing; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (InterPro:IPR004506), tRNA methyl transferase-like (InterPro:IPR018318); Has 5934 Blast hits to 5930 proteins in 1456 species: Archae - 0; Bacteria - 3103; Metazoa - 118; Fungi - 45; Plants - 26; Viruses - 0; Other Eukaryotes - 2642 (source: NCBI BLink).  protein_id AT1G51310.1p  transcript_id AT1G51310.1  protein_id AT1G51310.1p  transcript_id AT1G51310.1  
At1g51320	chr1:019025642	0.0	W/19025642-19026769	AT1G51320.1  CDS  gene_syn F11M15.18, F11M15_18  go_component chloroplast|GO:0009507|18431481|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product F-box family protein (FBX11)  note F-box family protein (FBX11); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (FBX10) (TAIR:AT1G51290.1); Has 896 Blast hits to 874 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 894; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G51320.1p  transcript_id AT1G51320.1  protein_id AT1G51320.1p  transcript_id AT1G51320.1  
At1g51330	chr1:019029752	0.0	C/19029752-19029844,19029168-19029493,19028841-19029003	AT1G51330.1  CDS  gene_syn F11M15.19, F11M15_19  go_function serine-type endopeptidase inhibitor activity|GO:0004867||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product serpin-related / serine protease inhibitor-related  note serpin-related / serine protease inhibitor-related; FUNCTIONS IN: serine-type endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protease inhibitor I4, serpin, plant (InterPro:IPR015554), Protease inhibitor I4, serpin (InterPro:IPR000215); BEST Arabidopsis thaliana protein match is: serpin family protein / serine protease inhibitor family protein (TAIR:AT2G14540.1); Has 2542 Blast hits to 2533 proteins in 203 species: Archae - 37; Bacteria - 128; Metazoa - 2060; Fungi - 0; Plants - 187; Viruses - 35; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT1G51330.1p  transcript_id AT1G51330.1  protein_id AT1G51330.1p  transcript_id AT1G51330.1  
At1g51340	chr1:019032021	0.0	W/19032021-19032091,19032179-19032300,19032402-19032623,19032710-19032894,19032972-19033107,19033214-19033310,19033397-19033497,19033602-19033765,19033852-19033923,19034121-19034237,19034329-19034546,19034639-19034681	AT1G51340.2  CDS  gene_syn F11M15.20, F11M15_20  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: FRD3 (FERRIC REDUCTASE DEFECTIVE 3); antiporter/ transporter (TAIR:AT3G08040.2); Has 6655 Blast hits to 6621 proteins in 1041 species: Archae - 189; Bacteria - 4474; Metazoa - 94; Fungi - 103; Plants - 187; Viruses - 0; Other Eukaryotes - 1608 (source: NCBI BLink).  protein_id AT1G51340.2p  transcript_id AT1G51340.2  protein_id AT1G51340.2p  transcript_id AT1G51340.2  
At1g51340	chr1:019032034	0.0	W/19032034-19032091,19032184-19032300,19032402-19032623,19032710-19032894,19032972-19033107,19033214-19033310,19033397-19033497,19033602-19033765,19033852-19033923,19034121-19034237,19034329-19034546,19034639-19034681	AT1G51340.1  CDS  gene_syn F11M15.20, F11M15_20  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: drug transporter activity, antiporter activity; INVOLVED IN: multidrug transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: FRD3 (FERRIC REDUCTASE DEFECTIVE 3); antiporter/ transporter (TAIR:AT3G08040.2); Has 6660 Blast hits to 6626 proteins in 1041 species: Archae - 189; Bacteria - 4478; Metazoa - 94; Fungi - 103; Plants - 187; Viruses - 0; Other Eukaryotes - 1609 (source: NCBI BLink).  protein_id AT1G51340.1p  transcript_id AT1G51340.1  protein_id AT1G51340.1p  transcript_id AT1G51340.1  
At1g51350	chr1:019035851	0.0	W/19035851-19036219,19036531-19037253,19037367-19037462,19037550-19037633,19037753-19037987,19038079-19038239,19038316-19038594,19038685-19038738	AT1G51350.1  CDS  gene_syn F11M15.21, F11M15_21  go_function binding|GO:0005488||IEA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|ISS  go_process biological_process|GO:0008150||ND  product armadillo/beta-catenin repeat family protein  note armadillo/beta-catenin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid lumen; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT2G22125.1); Has 1009 Blast hits to 781 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 442; Fungi - 333; Plants - 157; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT1G51350.1p  transcript_id AT1G51350.1  protein_id AT1G51350.1p  transcript_id AT1G51350.1  
At1g51355	chr1:019041475	0.0	W/19041475-19041825	AT1G51355.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20898.1); Has 15 Blast hits to 15 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G51355.1p  transcript_id AT1G51355.1  protein_id AT1G51355.1p  transcript_id AT1G51355.1  
At1g51360	chr1:019044208	0.0	W/19044208-19044840	AT1G51360.1  CDS  gene_syn ATDABB1, DABB1, DIMERIC A/B BARREL DOMAINS-PROTEIN 1, F11M15.22, F11M15_22  gene DABB1  function Involved in defense against fungal pathogens and located in cytosol.  go_component cytosol|GO:0005829|18674644|IDA  go_process response to fungus|GO:0009620|18674644|IEP  go_process response to jasmonic acid stimulus|GO:0009753|18674644|IEP  go_process defense response to fungus, incompatible interaction|GO:0009817|18674644|IDA  product DABB1 (DIMERIC A/B BARREL DOMAINS-PROTEIN 1)  note DIMERIC A/B BARREL DOMAINS-PROTEIN 1 (DABB1); INVOLVED IN: defense response to fungus, incompatible interaction, response to jasmonic acid stimulus, response to fungus; LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Stress responsive alpha-beta barrel (InterPro:IPR013097), Dimeric alpha-beta barrel (InterPro:IPR011008); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31670.1); Has 89 Blast hits to 88 proteins in 29 species: Archae - 2; Bacteria - 35; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G51360.1p  transcript_id AT1G51360.1  protein_id AT1G51360.1p  transcript_id AT1G51360.1  
At1g51370	chr1:019045615	0.0	W/19045615-19046487,19046581-19046721,19046848-19047141	AT1G51370.1  CDS  gene_syn F11M15.27, F11M15_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (FBL13) (TAIR:AT5G53840.1); Has 1312 Blast hits to 1283 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1312; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G51370.1p  transcript_id AT1G51370.1  protein_id AT1G51370.1p  transcript_id AT1G51370.1  
At1g51370	chr1:019045615	0.0	W/19045615-19046487,19046581-19046748	AT1G51370.2  CDS  gene_syn F11M15.27, F11M15_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (FBL13) (TAIR:AT5G53840.1); Has 1270 Blast hits to 1245 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1270; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G51370.2p  transcript_id AT1G51370.2  protein_id AT1G51370.2p  transcript_id AT1G51370.2  
At1g51380	chr1:019047960	0.0	W/19047960-19048228,19048714-19049035,19049123-19049230,19049308-19049427,19049516-19049683,19049776-19049967	AT1G51380.1  CDS  gene_syn F11M15.24, F11M15_24  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_component cellular_component|GO:0005575||ND  go_function ATP-dependent helicase activity|GO:0008026||ISS  product eukaryotic translation initiation factor 4A, putative / eIF-4A, putative  note eukaryotic translation initiation factor 4A, putative / eIF-4A, putative; FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative (TAIR:AT3G19760.1); Has 28354 Blast hits to 27866 proteins in 1723 species: Archae - 374; Bacteria - 11782; Metazoa - 5169; Fungi - 3198; Plants - 1370; Viruses - 24; Other Eukaryotes - 6437 (source: NCBI BLink).  protein_id AT1G51380.1p  transcript_id AT1G51380.1  protein_id AT1G51380.1p  transcript_id AT1G51380.1  
At1g51390	chr1:019050427	0.0	W/19050427-19050634,19050760-19050921,19051009-19051184,19051257-19051360,19051440-19051551,19051688-19051753	AT1G51390.1  CDS  gene_syn ATNFU1, F11M15.25, F11M15_25, NFU5  gene NFU5  function Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU4 than to NFU1,2, and 3. Targeted to the mitochondrion.  go_component mitochondrion|GO:0005739|17137349|IDA  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|12553879|ISS  go_component mitochondrion|GO:0005739|15031412|ISS  go_process iron-sulfur cluster assembly|GO:0016226|12553879|IGI  go_process iron-sulfur cluster assembly|GO:0016226|15031412|ISS  go_function structural molecule activity|GO:0005198|12553879|TAS  product NFU5; ATP binding / structural molecule  note NFU5; FUNCTIONS IN: structural molecule activity, ATP binding; INVOLVED IN: iron-sulfur cluster assembly; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: NIF system FeS cluster assembly, NifU, C-terminal (InterPro:IPR001075), HIRA-interacting protein 5 (InterPro:IPR017065), NIF system FeS cluster assembly, NifU-like scaffold, N-terminal (InterPro:IPR014824); BEST Arabidopsis thaliana protein match is: NFU4; structural molecule (TAIR:AT3G20970.1); Has 4450 Blast hits to 4410 proteins in 916 species: Archae - 6; Bacteria - 1747; Metazoa - 136; Fungi - 101; Plants - 104; Viruses - 2; Other Eukaryotes - 2354 (source: NCBI BLink).  protein_id AT1G51390.1p  transcript_id AT1G51390.1  protein_id AT1G51390.1p  transcript_id AT1G51390.1  
At1g51400	chr1:019052172	0.0	C/19052172-19052492	AT1G51400.1  CDS  gene_syn F5D21.10, F5D21_10  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|ISS  go_component chloroplast photosystem II|GO:0030095||ISS  go_process response to wounding|GO:0009611|12665302|IEP  go_process response to ozone|GO:0010193|12665302|IEP  go_process response to UV-B|GO:0010224|12665302|IEP  go_function molecular_function|GO:0003674||ND  product photosystem II 5 kD protein  note photosystem II 5 kD protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to UV-B, response to wounding, response to ozone; LOCATED IN: chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PSBTN (photosystem II subunit T) (TAIR:AT3G21055.1); Has 59 Blast hits to 59 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G51400.1p  transcript_id AT1G51400.1  protein_id AT1G51400.1p  transcript_id AT1G51400.1  
At1g51402	chr1:019052338	0.0	W/19052338-19052500,19053343-19053362	AT1G51402.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G51402.1p  transcript_id AT1G51402.1  protein_id AT1G51402.1p  transcript_id AT1G51402.1  
At1g51405	chr1:019057780	0.0	W/19057780-19058283,19058373-19058660,19058735-19058860,19058941-19059162,19059259-19059582	AT1G51405.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product myosin-related  note myosin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 9927 Blast hits to 6365 proteins in 457 species: Archae - 124; Bacteria - 468; Metazoa - 6162; Fungi - 628; Plants - 310; Viruses - 4; Other Eukaryotes - 2231 (source: NCBI BLink).  protein_id AT1G51405.1p  transcript_id AT1G51405.1  protein_id AT1G51405.1p  transcript_id AT1G51405.1  
At1g51410	chr1:019059885	0.0	W/19059885-19060005,19060226-19060395,19060482-19060673,19060758-19060920,19060995-19061181,19061280-19061424	AT1G51410.1  CDS  gene_syn F5D21.12, F5D21_12  function similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_component cellular_component|GO:0005575||ND  go_function alcohol dehydrogenase activity|GO:0004022|14745009|ISS  product cinnamyl-alcohol dehydrogenase, putative (CAD)  note cinnamyl-alcohol dehydrogenase, putative (CAD); FUNCTIONS IN: alcohol dehydrogenase activity; INVOLVED IN: cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamyl-alcohol dehydrogenase, putative (CAD) (TAIR:AT5G19440.1); Has 5733 Blast hits to 5721 proteins in 922 species: Archae - 42; Bacteria - 1748; Metazoa - 250; Fungi - 561; Plants - 1397; Viruses - 7; Other Eukaryotes - 1728 (source: NCBI BLink).  protein_id AT1G51410.1p  transcript_id AT1G51410.1  protein_id AT1G51410.1p  transcript_id AT1G51410.1  
At1g51420	chr1:019066645	0.0	C/19066645-19066704,19066260-19066562,19066069-19066170,19065800-19065994,19065434-19065724,19065157-19065343,19065024-19065070,19064852-19064938	AT1G51420.1  CDS  gene_syn ATSPP1, F5D21.9, F5D21_9, SPP1, SUCROSE-PHOSPHATASE 1  gene SPP1  go_component plasma membrane|GO:0005886|17151019|IDA  go_process sucrose biosynthetic process|GO:0005986||IEA  go_process metabolic process|GO:0008152||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function catalytic activity|GO:0003824||IEA  go_function phosphatase activity|GO:0016791||IEA  go_function sucrose-phosphatase activity|GO:0050307||IEA  go_process sucrose biosynthetic process|GO:0005986||ISS  go_function sucrose-phosphatase activity|GO:0050307||ISS  product SPP1 (SUCROSE-PHOSPHATASE 1); catalytic/ magnesium ion binding / phosphatase/ sucrose-phosphatase  note SUCROSE-PHOSPHATASE 1 (SPP1); FUNCTIONS IN: phosphatase activity, magnesium ion binding, sucrose-phosphatase activity, catalytic activity; INVOLVED IN: sucrose biosynthetic process, metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: leaf whorl, petal, flower, root, cultured cell; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sucrose-6F-phosphate phosphohydrolase, plant and cyanobacteria (InterPro:IPR006380), Sucrose-6-phosphate phosphohydrolase C-terminal (InterPro:IPR013679), HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Sucrose phosphatase, plant and cyanobacteria (InterPro:IPR012847), Sucrose-phosphate phosphatase (InterPro:IPR006378); BEST Arabidopsis thaliana protein match is: sucrose-phosphatase 1 (SPP1) (TAIR:AT2G35840.2); Has 490 Blast hits to 488 proteins in 176 species: Archae - 0; Bacteria - 325; Metazoa - 0; Fungi - 0; Plants - 106; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT1G51420.1p  transcript_id AT1G51420.1  protein_id AT1G51420.1p  transcript_id AT1G51420.1  
At1g51430	chr1:019068241	0.0	W/19068241-19068300,19068424-19068489,19068526-19068612,19068711-19068773,19068992-19069036,19069112-19069169,19069263-19069366	AT1G51430.1  CDS  gene_syn F5D21.20, F5D21_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28370.1); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G51430.1p  transcript_id AT1G51430.1  protein_id AT1G51430.1p  transcript_id AT1G51430.1  
At1g51440	chr1:019070971	0.0	W/19070971-19072554	AT1G51440.1  CDS  gene_syn F5D21.19, F5D21_19  go_component chloroplast|GO:0009507||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product lipase class 3 family protein  note lipase class 3 family protein; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: lipase class 3 family protein (TAIR:AT2G30550.2); Has 687 Blast hits to 681 proteins in 135 species: Archae - 0; Bacteria - 108; Metazoa - 18; Fungi - 125; Plants - 285; Viruses - 5; Other Eukaryotes - 146 (source: NCBI BLink).  protein_id AT1G51440.1p  transcript_id AT1G51440.1  protein_id AT1G51440.1p  transcript_id AT1G51440.1  
At1g51450	chr1:019074399	0.0	W/19074399-19075662,19075955-19076220	AT1G51450.1  CDS  gene_syn F5D21.18, F5D21_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SPla/RYanodine receptor (SPRY) domain-containing protein  note SPla/RYanodine receptor (SPRY) domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SPla/RYanodine receptor subgroup (InterPro:IPR018355), B302 (SPRY)-like (InterPro:IPR001870), SPla/RYanodine receptor SPRY (InterPro:IPR003877); Has 2027 Blast hits to 1775 proteins in 208 species: Archae - 8; Bacteria - 131; Metazoa - 1107; Fungi - 306; Plants - 111; Viruses - 13; Other Eukaryotes - 351 (source: NCBI BLink).  protein_id AT1G51450.1p  transcript_id AT1G51450.1  protein_id AT1G51450.1p  transcript_id AT1G51450.1  
At1g51460	chr1:019081149	0.0	C/19081149-19081335,19079487-19079566,19078941-19079402,19078744-19078866,19078500-19078661,19078128-19078412,19077773-19078045,19077570-19077677,19077132-19077488	AT1G51460.1  CDS  gene_syn F5D21.8, F5D21_8  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ABC transporter family protein  note ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 (InterPro:IPR000412), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT3G21090.1); Has 219261 Blast hits to 202327 proteins in 2600 species: Archae - 4162; Bacteria - 154046; Metazoa - 6503; Fungi - 4339; Plants - 2649; Viruses - 18; Other Eukaryotes - 47544 (source: NCBI BLink).  protein_id AT1G51460.1p  transcript_id AT1G51460.1  protein_id AT1G51460.1p  transcript_id AT1G51460.1  
At1g51470	chr1:019087424	0.0	W/19087424-19087615,19087706-19087766,19087890-19087948,19088052-19088127,19088255-19088332,19088433-19088520,19088640-19088883,19088984-19089102,19089244-19089455,19089550-19089581,19089674-19089770,19089872-19089980,19090080-19090248	AT1G51470.1  CDS  gene_syn BETA GLUCOSIDASE 35, BGLU35, F5D21.17, F5D21_17  gene BGLU35  go_component endomembrane system|GO:0012505||IEA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU35 (BETA GLUCOSIDASE 35); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 35 (BGLU35); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU34 (BETA GLUCOSIDASE 34); hydrolase, hydrolyzing O-glycosyl compounds / thioglucosidase (TAIR:AT1G47600.1); Has 5703 Blast hits to 5471 proteins in 796 species: Archae - 100; Bacteria - 3097; Metazoa - 604; Fungi - 131; Plants - 844; Viruses - 0; Other Eukaryotes - 927 (source: NCBI BLink).  protein_id AT1G51470.1p  transcript_id AT1G51470.1  protein_id AT1G51470.1p  transcript_id AT1G51470.1  
At1g51480	chr1:019094056	0.0	C/19094056-19094306,19090847-19093421	AT1G51480.1  CDS  gene_syn F5D21.7, F5D21_7  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative  note disease resistance protein (CC-NBS-LRR class), putative; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT5G43730.1); Has 11354 Blast hits to 10742 proteins in 441 species: Archae - 10; Bacteria - 382; Metazoa - 1622; Fungi - 104; Plants - 9054; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink).  protein_id AT1G51480.1p  transcript_id AT1G51480.1  protein_id AT1G51480.1p  transcript_id AT1G51480.1  
At1g51490	chr1:019094888	0.0	W/19094888-19095004,19095109-19095169,19095278-19095336,19095435-19095510,19095610-19095687,19095779-19095867,19095963-19096202,19096291-19096401,19096510-19096723,19096804-19096851,19096875-19096975,19097093-19097184,19097284-19097452	AT1G51490.1  CDS  gene_syn BETA GLUCOSIDASE 36, BGLU36, F5D21.16, F5D21_16  gene BGLU36  go_component mitochondrion|GO:0005739||IEA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU36 (BETA GLUCOSIDASE 36); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 36 (BGLU36); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: response to salt stress; LOCATED IN: mitochondrion; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU34 (BETA GLUCOSIDASE 34); hydrolase, hydrolyzing O-glycosyl compounds / thioglucosidase (TAIR:AT1G47600.1); Has 5655 Blast hits to 5355 proteins in 793 species: Archae - 98; Bacteria - 3102; Metazoa - 606; Fungi - 135; Plants - 842; Viruses - 0; Other Eukaryotes - 872 (source: NCBI BLink).  protein_id AT1G51490.1p  transcript_id AT1G51490.1  protein_id AT1G51490.1p  transcript_id AT1G51490.1  
At1g51500	chr1:019100744	0.0	C/19100744-19100972,19100429-19100508,19099881-19100345,19099673-19099795,19099456-19099587,19098805-19099365,19098587-19098694,19097967-19098332	AT1G51500.1  CDS  gene_syn ABC TRANSPORTER FROM THE ABCG SUBFAMILY 12, ABCG12, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATWBC12, CER5, D3, ECERIFERUM 5, F5D21.6, F5D21_6, WBC12, WHITE-BROWN COMPLEX 12  gene CER5  function Encodes an ABC transporter involved in cuticular wax biosynthesis. Lines carrying recessive mutations in this locus have weakly glaucous stem surface, and relative elevated secondary alcohols and ketones.  go_component membrane|GO:0016020||IEA  go_process wax biosynthetic process|GO:0010025|11336252|IMP  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product CER5 (ECERIFERUM 5); ATPase, coupled to transmembrane movement of substances  note ECERIFERUM 5 (CER5); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: wax biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 (InterPro:IPR000412), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT3G21090.1); Has 218481 Blast hits to 201241 proteins in 2585 species: Archae - 4151; Bacteria - 153027; Metazoa - 7035; Fungi - 4365; Plants - 2668; Viruses - 9; Other Eukaryotes - 47226 (source: NCBI BLink).  protein_id AT1G51500.1p  transcript_id AT1G51500.1  protein_id AT1G51500.1p  transcript_id AT1G51500.1  
At1g51510	chr1:019104483	0.0	C/19104483-19104753,19104033-19104169,19103369-19103523,19103072-19103117	AT1G51510.1  CDS  gene_syn F5D21.5, F5D21_5, Y14  gene Y14  function This gene is predicted to encode a protein involved in the exon junction complex. Though there is a predicted RNA binding motif, in the Drosophila ortholog (33% identity), this motif mediates interactions with Mago and is not available for RNA binding. The Arabidopsis Y14 protein appears to be predominantly nucleolar, but there is also some evidence for its presence in the cytoplasm.  go_component nucleolus|GO:0005730|15496452|IDA  go_process RNA processing|GO:0006396||IEA  go_component nucleoplasm|GO:0005654|15496452|IDA  go_component cytoplasm|GO:0005737|16953428|IDA  go_component nuclear body|GO:0016604|15496452|IDA  go_component exon-exon junction complex|GO:0035145|16953428|IPI  go_function RNA binding|GO:0003723||ISS  go_function protein binding|GO:0005515|16953428|IPI  product Y14; RNA binding / protein binding  note Y14; FUNCTIONS IN: protein binding, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: nucleoplasm, exon-exon junction complex, nuclear body, nucleolus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA binding motif protein 8 (InterPro:IPR008111); BEST Arabidopsis thaliana protein match is: GR-RBP6 (glycine-rich RNA-binding protein 6); RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT1G18630.1); Has 8752 Blast hits to 7699 proteins in 462 species: Archae - 2; Bacteria - 645; Metazoa - 5379; Fungi - 781; Plants - 1111; Viruses - 0; Other Eukaryotes - 834 (source: NCBI BLink).  protein_id AT1G51510.1p  transcript_id AT1G51510.1  protein_id AT1G51510.1p  transcript_id AT1G51510.1  
At1g51520	chr1:019106789	0.0	W/19106789-19107504,19107704-19107850,19107973-19108152,19108239-19108342,19108436-19108515,19108594-19108690,19108778-19108862,19108961-19109093	AT1G51520.2  CDS  gene_syn F5D21.15, F5D21_15  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding / nucleotide binding  note nucleic acid binding / nucleotide binding; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT3G21100.2); Has 126 Blast hits to 90 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G51520.2p  transcript_id AT1G51520.2  protein_id AT1G51520.2p  transcript_id AT1G51520.2  
At1g51520	chr1:019106789	0.0	W/19106789-19107504,19107704-19107850,19107973-19108152,19108239-19108342,19108436-19108533	AT1G51520.1  CDS  gene_syn F5D21.15, F5D21_15  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding / nucleotide binding  note nucleic acid binding / nucleotide binding; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT3G21100.2); Has 126 Blast hits to 90 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G51520.1p  transcript_id AT1G51520.1  protein_id AT1G51520.1p  transcript_id AT1G51520.1  
At1g51530	chr1:019109854	0.0	W/19109854-19110006,19110081-19110367,19110581-19110691,19111113-19111254,19111390-19111471,19111571-19111777,19111861-19111924,19112023-19112152	AT1G51530.1  CDS  gene_syn F5D21.14, F5D21_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: nucleic acid binding / nucleotide binding (TAIR:AT1G51520.2); Has 135 Blast hits to 93 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G51530.1p  transcript_id AT1G51530.1  protein_id AT1G51530.1p  transcript_id AT1G51530.1  
At1g51538	chr1:019113183	0.0	W/19113183-19115273	AT1G51538.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G50830.1); Has 850 Blast hits to 822 proteins in 78 species: Archae - 0; Bacteria - 7; Metazoa - 113; Fungi - 24; Plants - 548; Viruses - 0; Other Eukaryotes - 158 (source: NCBI BLink).  protein_id AT1G51538.1p  transcript_id AT1G51538.1  protein_id AT1G51538.1p  transcript_id AT1G51538.1  
At1g51540	chr1:019115702	0.0	W/19115702-19115875,19116009-19116427,19116497-19116667,19116753-19116858,19116932-19117138,19117211-19117381	AT1G51540.1  CDS  gene_syn F5D21.24, F5D21_24  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing protein (TAIR:AT3G27220.1); Has 1571 Blast hits to 1365 proteins in 151 species: Archae - 11; Bacteria - 200; Metazoa - 1128; Fungi - 24; Plants - 53; Viruses - 41; Other Eukaryotes - 114 (source: NCBI BLink).  protein_id AT1G51540.1p  transcript_id AT1G51540.1  protein_id AT1G51540.1p  transcript_id AT1G51540.1  
At1g51550	chr1:019118859	0.0	C/19118859-19119291,19117646-19118649	AT1G51550.1  CDS  gene_syn F5D21.4, F5D21_4  go_component chloroplast|GO:0009507||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product F-box family protein  note F-box family protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: LKP2 (LOV KELCH PROTEIN 2); protein binding / ubiquitin-protein ligase (TAIR:AT2G18915.2); Has 3797 Blast hits to 1975 proteins in 228 species: Archae - 12; Bacteria - 152; Metazoa - 1573; Fungi - 497; Plants - 651; Viruses - 0; Other Eukaryotes - 912 (source: NCBI BLink).  protein_id AT1G51550.1p  transcript_id AT1G51550.1  protein_id AT1G51550.1p  transcript_id AT1G51550.1  
At1g51560	chr1:019121587	0.0	C/19121587-19121859,19121250-19121447,19121043-19121145,19120882-19120961,19120718-19120795,19120524-19120615,19120333-19120444,19120115-19120240,19119900-19120016	AT1G51560.1  CDS  gene_syn F5D21.3, F5D21_3  go_component chloroplast|GO:0009507||IEA  go_function FMN binding|GO:0010181||IEA  product FMN binding  note FMN binding; FUNCTIONS IN: FMN binding; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: FMN-binding split barrel (InterPro:IPR012349), Pyridoxamine 5&apos;-phosphate oxidase-related, FMN-binding core (InterPro:IPR011576), FMN-binding split barrel, related (InterPro:IPR009002); BEST Arabidopsis thaliana protein match is: FMN binding (TAIR:AT3G21140.1); Has 465 Blast hits to 465 proteins in 167 species: Archae - 0; Bacteria - 266; Metazoa - 23; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).  protein_id AT1G51560.1p  transcript_id AT1G51560.1  protein_id AT1G51560.1p  transcript_id AT1G51560.1  
At1g51570	chr1:019122358	0.0	C/19122358-19124688	AT1G51570.1  CDS  gene_syn F19C24.20, F19C24_20  go_component cell wall|GO:0005618|16287169|IDA  go_process tryptophan biosynthetic process|GO:0000162||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  product C2 domain-containing protein  note C2 domain-containing protein; INVOLVED IN: tryptophan biosynthetic process; LOCATED IN: endoplasmic reticulum, cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal, plant (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT3G57880.1); Has 4271 Blast hits to 3046 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 2967; Fungi - 155; Plants - 839; Viruses - 0; Other Eukaryotes - 310 (source: NCBI BLink).  protein_id AT1G51570.1p  transcript_id AT1G51570.1  protein_id AT1G51570.1p  transcript_id AT1G51570.1  
At1g51580	chr1:019125612	0.0	W/19125612-19126214,19126296-19126679,19126756-19127007,19127096-19127309,19127401-19127486,19127571-19127653,19127779-19127884,19127965-19128102	AT1G51580.1  CDS  gene_syn F5D21.23, F5D21_23  go_function RNA binding|GO:0003723||IEA  go_function nucleic acid binding|GO:0003676||ISS  product KH domain-containing protein  note KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT5G15270.2); Has 5597 Blast hits to 3199 proteins in 246 species: Archae - 3; Bacteria - 177; Metazoa - 3912; Fungi - 426; Plants - 769; Viruses - 20; Other Eukaryotes - 290 (source: NCBI BLink).  protein_id AT1G51580.1p  transcript_id AT1G51580.1  protein_id AT1G51580.1p  transcript_id AT1G51580.1  
At1g51590	chr1:019131350	0.0	C/19131350-19131406,19130978-19131090,19130792-19130857,19130477-19130651,19129847-19129936,19129580-19129704,19129421-19129486,19129218-19129326,19129048-19129146,19128889-19128969,19128638-19128808,19128315-19128533	AT1G51590.2  CDS  gene_syn F5D21.1, F5D21_1  go_function mannosyl-oligosaccharide 1,2-alpha-mannosidase activity|GO:0004571||IEA  go_function calcium ion binding|GO:0005509||IEA  go_component Golgi apparatus|GO:0005794|16618929|IDA  product mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative  note mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative; FUNCTIONS IN: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, calcium ion binding; LOCATED IN: Golgi apparatus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 47 (InterPro:IPR001382); BEST Arabidopsis thaliana protein match is: mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative (TAIR:AT3G21160.1); Has 1481 Blast hits to 1390 proteins in 137 species: Archae - 0; Bacteria - 4; Metazoa - 688; Fungi - 535; Plants - 77; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).  protein_id AT1G51590.2p  transcript_id AT1G51590.2  protein_id AT1G51590.2p  transcript_id AT1G51590.2  
At1g51590	chr1:019131974	0.0	C/19131974-19132132,19131592-19131639,19131350-19131511,19130978-19131090,19130792-19130857,19130477-19130651,19129847-19129936,19129580-19129704,19129421-19129486,19129218-19129326,19129048-19129146,19128889-19128969,19128638-19128808,19128315-19128533	AT1G51590.1  CDS  gene_syn F5D21.1, F5D21_1  go_function mannosyl-oligosaccharide 1,2-alpha-mannosidase activity|GO:0004571||IEA  go_function calcium ion binding|GO:0005509||IEA  go_component Golgi apparatus|GO:0005794|16618929|IDA  product mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative  note mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative; FUNCTIONS IN: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, calcium ion binding; LOCATED IN: Golgi apparatus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 47 (InterPro:IPR001382); BEST Arabidopsis thaliana protein match is: mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative (TAIR:AT3G21160.1); Has 1491 Blast hits to 1400 proteins in 137 species: Archae - 0; Bacteria - 4; Metazoa - 691; Fungi - 535; Plants - 77; Viruses - 0; Other Eukaryotes - 184 (source: NCBI BLink).  protein_id AT1G51590.1p  transcript_id AT1G51590.1  protein_id AT1G51590.1p  transcript_id AT1G51590.1  
At1g51600	chr1:019133176	0.0	W/19133176-19133481,19133655-19133747,19133837-19133970,19134079-19134210,19134800-19134905,19135019-19135087,19135184-19135252	AT1G51600.1  CDS  gene_syn F5D21.22, F5D21_22, TIFY2A, ZIM-LIKE 2, ZML2  gene TIFY2A  function member of a novel family of plant-specific GATA-type transcription factors.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function sequence-specific DNA binding|GO:0043565||IEA  go_function transcription factor activity|GO:0003700||ISS  product TIFY2A; sequence-specific DNA binding / transcription factor/ zinc ion binding  note TIFY2A; FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), Zinc finger, GATA-type (InterPro:IPR000679), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: ZML1 (ZIM-LIKE 1); sequence-specific DNA binding / transcription factor/ zinc ion binding (TAIR:AT3G21175.1); Has 1110 Blast hits to 1109 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 239; Plants - 841; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G51600.1p  transcript_id AT1G51600.1  protein_id AT1G51600.1p  transcript_id AT1G51600.1  
At1g51600	chr1:019133176	0.0	W/19133176-19133481,19133655-19133747,19133837-19133970,19134079-19134210,19134800-19134905,19135019-19135087,19135184-19135252	AT1G51600.2  CDS  gene_syn F5D21.22, F5D21_22, TIFY2A, ZIM-LIKE 2, ZML2  gene TIFY2A  function member of a novel family of plant-specific GATA-type transcription factors.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function sequence-specific DNA binding|GO:0043565||IEA  go_function transcription factor activity|GO:0003700||ISS  product TIFY2A; sequence-specific DNA binding / transcription factor/ zinc ion binding  note ZIM-LIKE 2 (ZML2); FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), Zinc finger, GATA-type (InterPro:IPR000679), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: ZML1 (ZIM-LIKE 1); sequence-specific DNA binding / transcription factor/ zinc ion binding (TAIR:AT3G21175.1); Has 1110 Blast hits to 1109 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 239; Plants - 841; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G51600.2p  transcript_id AT1G51600.2  protein_id AT1G51600.2p  transcript_id AT1G51600.2  
At1g51610	chr1:019136625	0.0	W/19136625-19136907,19137024-19137078,19137483-19137615,19137717-19137772,19137870-19137984,19138100-19138157,19138274-19138392,19138527-19138646,19138729-19138830,19138916-19138988,19139155-19139222,19139353-19139413,19139491-19139621	AT1G51610.1  CDS  gene_syn F19C24.16  go_component membrane|GO:0016020||IEA  go_process cation transport|GO:0006812||IEA  go_component membrane|GO:0016020||ISS  go_process cation transport|GO:0006812||ISS  go_function cation transmembrane transporter activity|GO:0008324||ISS  go_function efflux transmembrane transporter activity|GO:0015562|11500563|NAS  product cation efflux family protein / metal tolerance protein, putative (MTPc4)  note cation efflux family protein / metal tolerance protein, putative (MTPc4); FUNCTIONS IN: cation transmembrane transporter activity, efflux transmembrane transporter activity; INVOLVED IN: cation transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); Has 1695 Blast hits to 1693 proteins in 577 species: Archae - 81; Bacteria - 1248; Metazoa - 115; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 229 (source: NCBI BLink).  protein_id AT1G51610.1p  transcript_id AT1G51610.1  protein_id AT1G51610.1p  transcript_id AT1G51610.1  
At1g51620	chr1:019140536	0.0	W/19140536-19140583,19140653-19140779,19140870-19140932,19141009-19141201,19141281-19141638	AT1G51620.1  CDS  gene_syn F19C24.15, F19C24_15  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.10 ten leaves visible, LP.12 twelve leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT1G51805.1); Has 67324 Blast hits to 66732 proteins in 1779 species: Archae - 34; Bacteria - 5197; Metazoa - 29240; Fungi - 4902; Plants - 16777; Viruses - 189; Other Eukaryotes - 10985 (source: NCBI BLink).  protein_id AT1G51620.1p  transcript_id AT1G51620.1  protein_id AT1G51620.1p  transcript_id AT1G51620.1  
At1g51630	chr1:019143981	0.0	C/19143981-19144082,19143530-19143683,19143382-19143452,19143173-19143258,19142498-19143077,19142141-19142419	AT1G51630.1  CDS  gene_syn F19C24.14, F19C24_14  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, plant-type cell wall; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G21190.1); Has 396 Blast hits to 395 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G51630.1p  transcript_id AT1G51630.1  protein_id AT1G51630.1p  transcript_id AT1G51630.1  
At1g51645	chr1:019149496	0.0	W/19149496-19151730	AT1G51645.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G51640  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G51645.1  
At1g51640	chr1:019149862	0.0	C/19149862-19151844	AT1G51640.1  CDS  gene_syn ATEXO70G2, F19C24.13, F19C24_13, exocyst subunit EXO70 family protein G2  gene ATEXO70G2  function A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.  go_component exocyst|GO:0000145||IEA  go_process exocytosis|GO:0006887||IEA  go_component exocyst|GO:0000145||ISS  go_process vesicle docking during exocytosis|GO:0006904||ISS  go_function protein binding|GO:0005515||ISS  product ATEXO70G2 (exocyst subunit EXO70 family protein G2); protein binding  note exocyst subunit EXO70 family protein G2 (ATEXO70G2); FUNCTIONS IN: protein binding; INVOLVED IN: exocytosis, vesicle docking during exocytosis; LOCATED IN: exocyst; EXPRESSED IN: hypocotyl, flower, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: ATEXO70G1 (exocyst subunit EXO70 family protein G1); protein binding (TAIR:AT4G31540.1); Has 398 Blast hits to 398 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 76; Fungi - 5; Plants - 312; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G51640.1p  transcript_id AT1G51640.1  protein_id AT1G51640.1p  transcript_id AT1G51640.1  
At1g51650	chr1:019152680	0.0	W/19152680-19152863,19153613-19153641	AT1G51650.1  CDS  go_component mitochondrion|GO:0005739|15276431|IDA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_function hydrogen ion transporting ATP synthase activity, rotational mechanism|GO:0046933||IEA  go_function proton-transporting ATPase activity, rotational mechanism|GO:0046961||IEA  go_component mitochondrion|GO:0005739|12681508|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739||ISS  go_process ATP biosynthetic process|GO:0006754||ISS  go_function hydrogen ion transporting ATP synthase activity, rotational mechanism|GO:0046933||ISS  product ATP synthase epsilon chain, mitochondrial  note ATP synthase epsilon chain, mitochondrial; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: ATP biosynthetic process, ATP synthesis coupled proton transport; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, epsilon subunit, mitochondrial (InterPro:IPR006721); Has 170 Blast hits to 170 proteins in 64 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 3; Plants - 40; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G51650.1p  transcript_id AT1G51650.1  protein_id AT1G51650.1p  transcript_id AT1G51650.1  
At1g51660	chr1:019154575	0.0	W/19154575-19155675	AT1G51660.1  CDS  gene_syn ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, ATMKK4, F19C24.26, F19C24_26, MAP KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, MKK4  gene ATMKK4  function Encodes a mitogen-activated map kinase kinase (there are nine in Arabidopsis) involved in innate immunity. This protein activates MPK3/MPK6 and early-defense genes redundantly with MKK5. In plants with both MKK5 and MKK6 levels reduced by RNAi plants, floral organs do not abscise suggestion a role for both proteins in mediating floral organ abscission.  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process MAPKKK cascade|GO:0000165|9878570|IC  go_process defense response, incompatible interaction|GO:0009814|11875555|IMP  go_process floral organ abscission|GO:0010227|18809915|IMP  go_process stomatal complex development|GO:0010374|17259259|IGI  go_process stomatal complex patterning|GO:0010375|17259259|IGI  go_function MAP kinase kinase activity|GO:0004708|9878570|IDA  go_function MAP kinase kinase activity|GO:0004708|9878570|ISS  go_function kinase activity|GO:0016301||ISS  product ATMKK4 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4); MAP kinase kinase/ kinase  note ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4 (ATMKK4); FUNCTIONS IN: MAP kinase kinase activity, kinase activity; INVOLVED IN: stomatal complex patterning, MAPKKK cascade, floral organ abscission, defense response, incompatible interaction, stomatal complex development; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATMKK5 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5); MAP kinase kinase/ kinase (TAIR:AT3G21220.1); Has 95666 Blast hits to 94421 proteins in 3410 species: Archae - 59; Bacteria - 8438; Metazoa - 41814; Fungi - 8410; Plants - 18602; Viruses - 485; Other Eukaryotes - 17858 (source: NCBI BLink).  protein_id AT1G51660.1p  transcript_id AT1G51660.1  protein_id AT1G51660.1p  transcript_id AT1G51660.1  
At1g51670	chr1:019157142	0.0	W/19157142-19157229,19157800-19158188,19158285-19158344	AT1G51670.1  CDS  gene_syn F19C24.12, F19C24_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48180.1); Has 20 Blast hits to 20 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G51670.1p  transcript_id AT1G51670.1  protein_id AT1G51670.1p  transcript_id AT1G51670.1  
At1g51680	chr1:019160409	0.0	C/19160409-19161464,19159647-19160063	AT1G51680.2  CDS  gene_syn 4-COUMARATE:COA LIGASE, 4-COUMARATE:COA LIGASE 1, 4CL.1, 4CL1, ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, AT4CL1, F19C24.11, F19C24_11  gene 4CL1  function encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. In addition to 4-coumarate, it also converts ferulate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, ferulic acid, caffeic acid and 5-OH-ferulic acid. At4CL1 was unable to use sinapic acid as substrate.  go_component cellular_component|GO:0005575||ND  go_process response to UV|GO:0009411|10417722|IEP  go_process response to wounding|GO:0009611|10417722|IEP  go_process response to fungus|GO:0009620|10417722|IEP  go_process phenylpropanoid metabolic process|GO:0009698|10417722|TAS  go_function 4-coumarate-CoA ligase activity|GO:0016207|10417722|IDA  product 4CL1 (4-COUMARATE:COA LIGASE 1); 4-coumarate-CoA ligase  note 4-COUMARATE:COA LIGASE 1 (4CL1); FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, response to UV, response to fungus, response to wounding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: 4CL2 (4-COUMARATE:COA LIGASE 2); 4-coumarate-CoA ligase (TAIR:AT3G21240.1); Has 51926 Blast hits to 48003 proteins in 2240 species: Archae - 565; Bacteria - 28907; Metazoa - 2935; Fungi - 2846; Plants - 1289; Viruses - 1; Other Eukaryotes - 15383 (source: NCBI BLink).  protein_id AT1G51680.2p  transcript_id AT1G51680.2  protein_id AT1G51680.2p  transcript_id AT1G51680.2  
At1g51680	chr1:019160409	0.0	C/19160409-19161464,19159651-19160063,19159210-19159319,19159080-19159120	AT1G51680.3  CDS  gene_syn 4-COUMARATE:COA LIGASE, 4-COUMARATE:COA LIGASE 1, 4CL.1, 4CL1, ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, AT4CL1, F19C24.11, F19C24_11  gene 4CL1  function encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. In addition to 4-coumarate, it also converts ferulate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, ferulic acid, caffeic acid and 5-OH-ferulic acid. At4CL1 was unable to use sinapic acid as substrate.  go_component cellular_component|GO:0005575||ND  go_process response to UV|GO:0009411|10417722|IEP  go_process response to wounding|GO:0009611|10417722|IEP  go_process response to fungus|GO:0009620|10417722|IEP  go_process phenylpropanoid metabolic process|GO:0009698|10417722|TAS  go_function 4-coumarate-CoA ligase activity|GO:0016207|10417722|IDA  product 4CL1 (4-COUMARATE:COA LIGASE 1); 4-coumarate-CoA ligase  note 4-COUMARATE:COA LIGASE 1 (4CL1); FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, response to UV, response to fungus, response to wounding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: 4CL2 (4-COUMARATE:COA LIGASE 2); 4-coumarate-CoA ligase (TAIR:AT3G21240.1); Has 54134 Blast hits to 50053 proteins in 2249 species: Archae - 583; Bacteria - 29272; Metazoa - 2972; Fungi - 2982; Plants - 1323; Viruses - 1; Other Eukaryotes - 17001 (source: NCBI BLink).  protein_id AT1G51680.3p  transcript_id AT1G51680.3  protein_id AT1G51680.3p  transcript_id AT1G51680.3  
At1g51680	chr1:019160409	0.0	C/19160409-19161464,19159651-19160063,19159217-19159319,19159007-19159120	AT1G51680.1  CDS  gene_syn 4-COUMARATE:COA LIGASE, 4-COUMARATE:COA LIGASE 1, 4CL.1, 4CL1, ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, AT4CL1, F19C24.11, F19C24_11  gene 4CL1  function encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. In addition to 4-coumarate, it also converts ferulate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, ferulic acid, caffeic acid and 5-OH-ferulic acid. At4CL1 was unable to use sinapic acid as substrate.  go_component cellular_component|GO:0005575||ND  go_process response to UV|GO:0009411|10417722|IEP  go_process response to wounding|GO:0009611|10417722|IEP  go_process response to fungus|GO:0009620|10417722|IEP  go_process phenylpropanoid metabolic process|GO:0009698|10417722|TAS  go_function 4-coumarate-CoA ligase activity|GO:0016207|10417722|IDA  product 4CL1 (4-COUMARATE:COA LIGASE 1); 4-coumarate-CoA ligase  note 4-COUMARATE:COA LIGASE 1 (4CL1); FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, response to UV, response to fungus, response to wounding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: 4CL2 (4-COUMARATE:COA LIGASE 2); 4-coumarate-CoA ligase (TAIR:AT3G21240.1); Has 55339 Blast hits to 51262 proteins in 2253 species: Archae - 585; Bacteria - 29354; Metazoa - 2990; Fungi - 2977; Plants - 1332; Viruses - 1; Other Eukaryotes - 18100 (source: NCBI BLink).  protein_id AT1G51680.1p  transcript_id AT1G51680.1  protein_id AT1G51680.1p  transcript_id AT1G51680.1  
At1g51690	chr1:019166218	0.0	W/19166218-19166329,19166630-19166733,19166823-19166918,19167005-19167124,19167362-19167565,19167961-19168052,19168288-19168406,19168520-19168643,19168934-19169057,19169174-19169242,19169326-19169417,19169516-19169593,19169681-19169748,19169838-19169974	AT1G51690.2  CDS  gene_syn ATB ALPHA, F19C24.10, F19C24_10  gene ATB ALPHA  function 55 kDa B regulatory subunit of phosphatase 2A mRNA,  go_component protein phosphatase type 2A complex|GO:0000159||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein phosphatase type 2A regulator activity|GO:0008601||IEA  go_function nucleotide binding|GO:0000166||ISS  product ATB ALPHA; nucleotide binding / protein phosphatase type 2A regulator  note ATB ALPHA; FUNCTIONS IN: nucleotide binding, protein phosphatase type 2A regulator activity; INVOLVED IN: signal transduction; LOCATED IN: protein phosphatase type 2A complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Protein phosphatase 2A, regulatory subunit PR55 (InterPro:IPR000009), Protein phosphatase 2A, regulatory subunit PR55, conserved site (InterPro:IPR018067), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: ATB BETA; nucleotide binding / protein phosphatase type 2A regulator (TAIR:AT1G17720.2); Has 709 Blast hits to 687 proteins in 163 species: Archae - 0; Bacteria - 20; Metazoa - 387; Fungi - 113; Plants - 77; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).  protein_id AT1G51690.2p  transcript_id AT1G51690.2  protein_id AT1G51690.2p  transcript_id AT1G51690.2  
At1g51690	chr1:019166218	0.0	W/19166218-19166329,19166630-19166733,19166823-19166918,19167005-19167124,19167362-19167568,19167961-19168052,19168288-19168406,19168520-19168643,19168934-19169057,19169174-19169242,19169326-19169417,19169516-19169593,19169681-19169748,19169838-19169974	AT1G51690.1  CDS  gene_syn ATB ALPHA, F19C24.10, F19C24_10  gene ATB ALPHA  function 55 kDa B regulatory subunit of phosphatase 2A mRNA,  go_component protein phosphatase type 2A complex|GO:0000159||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein phosphatase type 2A regulator activity|GO:0008601||IEA  go_function nucleotide binding|GO:0000166||ISS  product ATB ALPHA; nucleotide binding / protein phosphatase type 2A regulator  note ATB ALPHA; FUNCTIONS IN: nucleotide binding, protein phosphatase type 2A regulator activity; INVOLVED IN: signal transduction; LOCATED IN: protein phosphatase type 2A complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Protein phosphatase 2A, regulatory subunit PR55 (InterPro:IPR000009), Protein phosphatase 2A, regulatory subunit PR55, conserved site (InterPro:IPR018067), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: ATB BETA; nucleotide binding / protein phosphatase type 2A regulator (TAIR:AT1G17720.1); Has 721 Blast hits to 697 proteins in 163 species: Archae - 0; Bacteria - 23; Metazoa - 390; Fungi - 113; Plants - 77; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).  protein_id AT1G51690.1p  transcript_id AT1G51690.1  protein_id AT1G51690.1p  transcript_id AT1G51690.1  
At1g51700	chr1:019174266	0.0	W/19174266-19174850	AT1G51700.1  CDS  gene_syn ADOF1, F19C24.9, F19C24_9  gene ADOF1  function Encodes dof zinc finger protein (adof1).  go_component cellular_component|GO:0005575||ND  go_process response to chitin|GO:0010200|17722694|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product ADOF1; DNA binding / transcription factor  note ADOF1; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to chitin, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: ADOF2; DNA binding / transcription factor (TAIR:AT3G21270.1); Has 619 Blast hits to 615 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 614; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G51700.1p  transcript_id AT1G51700.1  protein_id AT1G51700.1p  transcript_id AT1G51700.1  
At1g51710	chr1:019179325	0.0	C/19179325-19179399,19179114-19179221,19178789-19178889,19178558-19178684,19178147-19178206,19177941-19178059,19177381-19177489,19177138-19177226,19176883-19176952,19176712-19176792,19176543-19176635,19176414-19176462,19176110-19176229,19175960-19176034,19175805-19175860	AT1G51710.2  CDS  gene_syn ATUBP6, F19C24.8, F19C24_8, UBIQUITIN-SPECIFIC PROTEASE 6, UBP6  gene UBP6  function Ubiquitin-specific protease 6 (UBP6). Deubiquinating enzyme. Interacts with calmodulin.  go_component cellular_component|GO:0005575||ND  go_process protein deubiquitination|GO:0016579|15987637|TAS  go_function ubiquitin-specific protease activity|GO:0004843|15987637|IGI  go_function ubiquitin-specific protease activity|GO:0004843||ISS  go_function calmodulin binding|GO:0005516|15987637|IDA  product UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6); calmodulin binding / ubiquitin-specific protease  note UBIQUITIN-SPECIFIC PROTEASE 6 (UBP6); FUNCTIONS IN: ubiquitin-specific protease activity, calmodulin binding; INVOLVED IN: protein deubiquitination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: UBP7 (UBIQUITIN-SPECIFIC PROTEASE 7); ubiquitin thiolesterase/ ubiquitin-specific protease (TAIR:AT3G21280.1); Has 3690 Blast hits to 3424 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 2138; Fungi - 578; Plants - 356; Viruses - 2; Other Eukaryotes - 616 (source: NCBI BLink).  protein_id AT1G51710.2p  transcript_id AT1G51710.2  protein_id AT1G51710.2p  transcript_id AT1G51710.2  
At1g51710	chr1:019179885	0.0	C/19179885-19179894,19179479-19179624,19179325-19179360,19179114-19179221,19178789-19178889,19178558-19178684,19178147-19178206,19177941-19178059,19177381-19177489,19177138-19177226,19176883-19176952,19176712-19176792,19176543-19176635,19176414-19176462,19176110-19176229,19175960-19176034,19175805-19175860	AT1G51710.1  CDS  gene_syn ATUBP6, F19C24.8, F19C24_8, UBIQUITIN-SPECIFIC PROTEASE 6, UBP6  gene UBP6  function Ubiquitin-specific protease 6 (UBP6). Deubiquinating enzyme. Interacts with calmodulin.  go_component cellular_component|GO:0005575||ND  go_process protein deubiquitination|GO:0016579|15987637|TAS  go_function ubiquitin-specific protease activity|GO:0004843|15987637|IGI  go_function ubiquitin-specific protease activity|GO:0004843||ISS  go_function calmodulin binding|GO:0005516|15987637|IDA  product UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6); calmodulin binding / ubiquitin-specific protease  note UBIQUITIN-SPECIFIC PROTEASE 6 (UBP6); FUNCTIONS IN: ubiquitin-specific protease activity, calmodulin binding; INVOLVED IN: protein deubiquitination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: UBP7 (UBIQUITIN-SPECIFIC PROTEASE 7); ubiquitin thiolesterase/ ubiquitin-specific protease (TAIR:AT3G21280.1); Has 3669 Blast hits to 3406 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 2131; Fungi - 564; Plants - 354; Viruses - 2; Other Eukaryotes - 618 (source: NCBI BLink).  protein_id AT1G51710.1p  transcript_id AT1G51710.1  protein_id AT1G51710.1p  transcript_id AT1G51710.1  
At1g51720	chr1:019181741	0.0	W/19181741-19182302,19182827-19182956,19183044-19183245,19183403-19183489,19183570-19183629,19183703-19183789,19184117-19184188,19184279-19184334,19184566-19184651,19185040-19185130,19185213-19185370,19185486-19185577,19185850-19185930,19186019-19186092,19186222-19186297	AT1G51720.1  CDS  gene_syn F19C24.7, F19C24_7  go_process amino acid metabolic process|GO:0006520||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product glutamate dehydrogenase, putative  note glutamate dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: amino acid metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamate/phenylalanine/leucine/valine dehydrogenase (InterPro:IPR006095), Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal (InterPro:IPR006096), NAD(P)-binding (InterPro:IPR016040), Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation region (InterPro:IPR006097); BEST Arabidopsis thaliana protein match is: GDH2 (GLUTAMATE DEHYDROGENASE 2); ATP binding / glutamate dehydrogenase [NAD(P)+]/ glutamate dehydrogenase/ oxidoreductase (TAIR:AT5G07440.2); Has 4904 Blast hits to 4900 proteins in 1133 species: Archae - 180; Bacteria - 2198; Metazoa - 312; Fungi - 133; Plants - 236; Viruses - 0; Other Eukaryotes - 1845 (source: NCBI BLink).  protein_id AT1G51720.1p  transcript_id AT1G51720.1  protein_id AT1G51720.1p  transcript_id AT1G51720.1  
At1g51730	chr1:019188632	0.0	C/19188632-19188638,19188398-19188463,19188246-19188313,19188094-19188127,19187937-19188006,19187799-19187856,19187543-19187671,19187329-19187420,19187142-19187220,19186974-19187055,19186812-19186885	AT1G51730.1  CDS  gene_syn F19C24.6, F19C24_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product RWD domain-containing protein  note RWD domain-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), RWD (InterPro:IPR006575); Has 763 Blast hits to 761 proteins in 148 species: Archae - 0; Bacteria - 2; Metazoa - 493; Fungi - 159; Plants - 34; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT1G51730.1p  transcript_id AT1G51730.1  protein_id AT1G51730.1p  transcript_id AT1G51730.1  
At1g51740	chr1:019189063	0.0	W/19189063-19189140,19189304-19189387,19189491-19189595,19189901-19190044,19190151-19190396,19190481-19190612,19191045-19191188	AT1G51740.1  CDS  gene_syn ARABIDOPSIS THALIANA ORTHOLOG OF YEAST UFE1 (UNKNOWN FUNCTION-ESSENTIAL 1), ATSYP81, ATUFE1, F19C24.5, F19C24_5, ORTHOLOG OF YEAST UFE1 (UNKNOWN FUNCTION-ESSENTIAL 1), SYNTAXIN OF PLANTS 81, SYP81, UFE1  gene SYP81  function member of SYP8 Gene Family  go_component membrane|GO:0016020||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function SNAP receptor activity|GO:0005484||IEA  go_function protein binding|GO:0005515||IEA  product SYP81 (SYNTAXIN OF PLANTS 81); SNAP receptor/ protein binding  note SYNTAXIN OF PLANTS 81 (SYP81); FUNCTIONS IN: protein binding, SNAP receptor activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012); Has 330 Blast hits to 328 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 178; Fungi - 58; Plants - 68; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G51740.1p  transcript_id AT1G51740.1  protein_id AT1G51740.1p  transcript_id AT1G51740.1  
At1g51745	chr1:019192055	0.0	W/19192055-19192245,19192358-19193316,19193722-19194219,19194332-19194375	AT1G51745.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G21295.1); Has 414 Blast hits to 307 proteins in 88 species: Archae - 0; Bacteria - 106; Metazoa - 143; Fungi - 35; Plants - 61; Viruses - 3; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT1G51745.1p  transcript_id AT1G51745.1  protein_id AT1G51745.1p  transcript_id AT1G51745.1  
At1g51745	chr1:019192236	0.0	W/19192236-19192249,19192358-19193316,19193722-19194219,19194332-19194375	AT1G51745.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G21295.1); Has 384 Blast hits to 280 proteins in 81 species: Archae - 0; Bacteria - 101; Metazoa - 128; Fungi - 31; Plants - 54; Viruses - 3; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT1G51745.2p  transcript_id AT1G51745.2  protein_id AT1G51745.2p  transcript_id AT1G51745.2  
At1g51750	chr1:019195194	0.0	W/19195194-19197149	AT1G51750.1  mRNA_TE_gene  pseudo  gene_syn F19C24.27, F19C24_27  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.6e-20 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At1g51760	chr1:019199562	0.0	W/19199562-19199909,19200190-19200315,19200418-19200732,19200811-19200939,19201020-19201424	AT1G51760.1  CDS  gene_syn F19C24.4, F19C24_4, IAA-ALA HYDROLASE, IAA-ALANINE RESISTANT 3, IAR3, JASMONIC ACID RESPONSIVE 3, JR3  gene IAR3  function encodes a member of the six Arabidopsis IAA-amino acid conjugate hydrolase subfamily and conjugates and conjugates IAA-Ala in vitro. Gene is expressed most strongly in roots, stems, and flowers.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process proteolysis|GO:0006508||ISS  go_process response to wounding|GO:0009611|17675405|IEP  go_function metallopeptidase activity|GO:0008237||ISS  go_function IAA-Ala conjugate hydrolase activity|GO:0010179|10072397|IDA  product IAR3 (IAA-ALANINE RESISTANT 3); IAA-Ala conjugate hydrolase/ metallopeptidase  note IAA-ALANINE RESISTANT 3 (IAR3); FUNCTIONS IN: metallopeptidase activity, IAA-Ala conjugate hydrolase activity; INVOLVED IN: proteolysis, response to wounding; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: Peptidase M20 (InterPro:IPR002933), Peptidase M20D, mername-AA028/carboxypeptidase Ss1 (InterPro:IPR017439), Peptidase M20, dimerisation (InterPro:IPR011650), Peptidase M20D, amidohydrolase (InterPro:IPR010168); BEST Arabidopsis thaliana protein match is: ILL5; IAA-amino acid conjugate hydrolase/ metallopeptidase (TAIR:AT1G51780.1); Has 7634 Blast hits to 7629 proteins in 1022 species: Archae - 64; Bacteria - 4383; Metazoa - 67; Fungi - 178; Plants - 190; Viruses - 0; Other Eukaryotes - 2752 (source: NCBI BLink).  protein_id AT1G51760.1p  transcript_id AT1G51760.1  protein_id AT1G51760.1p  transcript_id AT1G51760.1  
At1g51770	chr1:019201919	0.0	W/19201919-19202458,19202544-19202626,19202708-19203224	AT1G51770.2  CDS  gene_syn F19C24.28, F19C24_28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF266, plant (InterPro:IPR004949); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G21310.1); Has 312 Blast hits to 312 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 306; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G51770.2p  transcript_id AT1G51770.2  protein_id AT1G51770.2p  transcript_id AT1G51770.2  
At1g51770	chr1:019201919	0.0	W/19201919-19202458,19202544-19203224	AT1G51770.1  CDS  gene_syn F19C24.28, F19C24_28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF266, plant (InterPro:IPR004949); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G21310.1); Has 336 Blast hits to 336 proteins in 13 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 306; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G51770.1p  transcript_id AT1G51770.1  protein_id AT1G51770.1p  transcript_id AT1G51770.1  
At1g51780	chr1:019204602	0.0	W/19204602-19204949,19205227-19205352,19205463-19205777,19205858-19205986,19206064-19206453	AT1G51780.1  CDS  gene_syn F19C24.29, F19C24_29, ILL5  gene ILL5  function encodes a member of the six Arabidopsis IAA-amino acid conjugate hydrolase subfamily and conjugates and is very similar to IAR3.  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_process proteolysis|GO:0006508||ISS  go_function metallopeptidase activity|GO:0008237||ISS  go_function IAA-amino acid conjugate hydrolase activity|GO:0010178|10072397|ISS  product ILL5; IAA-amino acid conjugate hydrolase/ metallopeptidase  note ILL5; FUNCTIONS IN: IAA-amino acid conjugate hydrolase activity, metallopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase M20 (InterPro:IPR002933), Peptidase M20D, mername-AA028/carboxypeptidase Ss1 (InterPro:IPR017439), Peptidase M20, dimerisation (InterPro:IPR011650), Peptidase M20D, amidohydrolase (InterPro:IPR010168); BEST Arabidopsis thaliana protein match is: IAR3 (IAA-ALANINE RESISTANT 3); IAA-Ala conjugate hydrolase/ metallopeptidase (TAIR:AT1G51760.1); Has 7511 Blast hits to 7506 proteins in 1033 species: Archae - 64; Bacteria - 4384; Metazoa - 53; Fungi - 159; Plants - 188; Viruses - 0; Other Eukaryotes - 2663 (source: NCBI BLink).  protein_id AT1G51780.1p  transcript_id AT1G51780.1  protein_id AT1G51780.1p  transcript_id AT1G51780.1  
At1g51790	chr1:019210493	0.0	C/19210493-19210574,19209364-19210389,19209145-19209283,19209000-19209071,19208855-19208929,19208699-19208767,19208427-19208602,19207980-19208200,19207773-19207899,19207634-19207696,19207348-19207537,19206858-19207266	AT1G51790.1  CDS  gene_syn F19C24.24, F19C24_24  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product kinase  note kinase; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT1G51800.1); Has 87571 Blast hits to 74430 proteins in 2763 species: Archae - 36; Bacteria - 5908; Metazoa - 32814; Fungi - 4914; Plants - 31508; Viruses - 303; Other Eukaryotes - 12088 (source: NCBI BLink).  protein_id AT1G51790.1p  transcript_id AT1G51790.1  protein_id AT1G51790.1p  transcript_id AT1G51790.1  
At1g51800	chr1:019214203	0.0	W/19214203-19214284,19214354-19214507,19214579-19214959,19215039-19215517,19215591-19215732,19215837-19215908,19215994-19216065,19216139-19216219,19216324-19216747,19216844-19216970,19217060-19217315,19217419-19217833	AT1G51800.1  CDS  gene_syn F19C24.3, F19C24_3  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat protein kinase, putative  note leucine-rich repeat protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT1G51860.1); Has 109513 Blast hits to 86953 proteins in 3128 species: Archae - 42; Bacteria - 7845; Metazoa - 37322; Fungi - 6560; Plants - 42369; Viruses - 356; Other Eukaryotes - 15019 (source: NCBI BLink).  protein_id AT1G51800.1p  transcript_id AT1G51800.1  protein_id AT1G51800.1p  transcript_id AT1G51800.1  
At1g51802	chr1:019218592	0.0	C/19218592-19218783	AT1G51802.1  pseudogenic_transcript  pseudo  function Encodes a defensin-like (DEFL) family protein.  
At1g51805	chr1:019225518	0.0	C/19225518-19225590,19224897-19225422,19223706-19224184,19223472-19223616,19223316-19223387,19223150-19223221,19222985-19223056,19222718-19222893,19222388-19222635,19222166-19222292,19222008-19222073,19221731-19221920,19221187-19221595	AT1G51805.1  CDS  gene_syn F19C24.2, F19C24_2  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat protein kinase, putative  note leucine-rich repeat protein kinase, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT1G51820.1); Has 106854 Blast hits to 86757 proteins in 3249 species: Archae - 50; Bacteria - 7688; Metazoa - 37747; Fungi - 6598; Plants - 39289; Viruses - 380; Other Eukaryotes - 15102 (source: NCBI BLink).  protein_id AT1G51805.1p  transcript_id AT1G51805.1  protein_id AT1G51805.1p  transcript_id AT1G51805.1  
At1g51810	chr1:019230367	0.0	C/19230367-19230584,19229805-19230286,19229466-19229610,19229320-19229391,19229145-19229216,19229001-19229072,19228733-19228917,19228405-19228640,19228187-19228313,19227871-19227936,19227582-19227771,19227119-19227488	AT1G51810.1  CDS  gene_syn T14L22.2, T14L22_2  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase  note ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT1G51820.1); Has 105179 Blast hits to 85198 proteins in 3178 species: Archae - 32; Bacteria - 7288; Metazoa - 37295; Fungi - 6402; Plants - 39210; Viruses - 348; Other Eukaryotes - 14604 (source: NCBI BLink).  protein_id AT1G51810.1p  transcript_id AT1G51810.1  protein_id AT1G51810.1p  transcript_id AT1G51810.1  
At1g51820	chr1:019241811	0.0	C/19241811-19241883,19241185-19241710,19239897-19240372,19239669-19239813,19239516-19239587,19239321-19239392,19239157-19239228,19238895-19239076,19238543-19238790,19238322-19238448,19238169-19238234,19237902-19238091,19237407-19237815	AT1G51820.1  CDS  gene_syn T14L22.3, T14L22_3  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat protein kinase, putative  note leucine-rich repeat protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT1G51850.1); Has 109414 Blast hits to 86126 proteins in 3153 species: Archae - 46; Bacteria - 7646; Metazoa - 37684; Fungi - 6428; Plants - 42342; Viruses - 373; Other Eukaryotes - 14895 (source: NCBI BLink).  protein_id AT1G51820.1p  transcript_id AT1G51820.1  protein_id AT1G51820.1p  transcript_id AT1G51820.1  
At1g51823	chr1:019242294	0.0	W/19242294-19242437	AT1G51823.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G51823.1p  transcript_id AT1G51823.1  protein_id AT1G51823.1p  transcript_id AT1G51823.1  
At1g51830	chr1:019245503	0.0	C/19245503-19246010,19245269-19245413,19245121-19245192,19244956-19245027,19244775-19244846,19244532-19244704,19244179-19244426,19243946-19244072,19243788-19243853,19243524-19243713,19243025-19243433	AT1G51830.1  CDS  gene_syn T14L22.4, T14L22_4  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product ATP binding / kinase/ protein serine/threonine kinase  note ATP binding / kinase/ protein serine/threonine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT1G51850.1); Has 108160 Blast hits to 87368 proteins in 3210 species: Archae - 42; Bacteria - 7696; Metazoa - 38133; Fungi - 6704; Plants - 40057; Viruses - 361; Other Eukaryotes - 15167 (source: NCBI BLink).  protein_id AT1G51830.1p  transcript_id AT1G51830.1  protein_id AT1G51830.1p  transcript_id AT1G51830.1  
At1g51840	chr1:019250078	0.0	C/19250078-19250150,19249659-19249978,19249449-19249598	AT1G51840.1  CDS  gene_syn T14L22.5, T14L22_5  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product protein kinase-related  note protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT1G51850.1); Has 354 Blast hits to 354 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 354; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G51840.1p  transcript_id AT1G51840.1  protein_id AT1G51840.1p  transcript_id AT1G51840.1  
At1g51850	chr1:019256711	0.0	C/19256711-19256783,19256305-19256624,19256099-19256244,19255425-19255900,19255195-19255339,19255040-19255111,19254880-19254951,19254720-19254791,19254449-19254630,19254110-19254357,19253874-19254000,19253724-19253789,19253453-19253642,19252964-19253372	AT1G51850.1  CDS  gene_syn T14L22.6, T14L22_6  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat protein kinase, putative  note leucine-rich repeat protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT1G51820.1); Has 115479 Blast hits to 87858 proteins in 3194 species: Archae - 58; Bacteria - 7917; Metazoa - 38288; Fungi - 6640; Plants - 46521; Viruses - 379; Other Eukaryotes - 15676 (source: NCBI BLink).  protein_id AT1G51850.1p  transcript_id AT1G51850.1  protein_id AT1G51850.1p  transcript_id AT1G51850.1  
At1g51860	chr1:019261398	0.0	C/19261398-19261479,19260753-19261293,19260192-19260670,19259956-19260100,19259788-19259859,19259609-19259680,19259440-19259526,19259169-19259320,19258833-19259083,19258610-19258736,19258449-19258514,19258133-19258322,19257634-19258042	AT1G51860.1  CDS  gene_syn T14L22.7, T14L22_7  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat protein kinase, putative  note leucine-rich repeat protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: stem, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT1G51880.1); Has 91854 Blast hits to 85050 proteins in 3166 species: Archae - 48; Bacteria - 7459; Metazoa - 37265; Fungi - 6510; Plants - 26135; Viruses - 330; Other Eukaryotes - 14107 (source: NCBI BLink).  protein_id AT1G51860.1p  transcript_id AT1G51860.1  protein_id AT1G51860.1p  transcript_id AT1G51860.1  
At1g51870	chr1:019266920	0.0	C/19266920-19267001,19266268-19266808,19265401-19265879,19265174-19265318,19265006-19265077,19264390-19264547,19264045-19264289,19263836-19263962,19263692-19263757,19263375-19263564,19262879-19263287	AT1G51870.1  CDS  gene_syn T14L22.8, T14L22_8  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT1G51860.1); Has 82974 Blast hits to 81828 proteins in 2952 species: Archae - 40; Bacteria - 7278; Metazoa - 36766; Fungi - 6344; Plants - 18551; Viruses - 312; Other Eukaryotes - 13683 (source: NCBI BLink).  protein_id AT1G51870.1p  transcript_id AT1G51870.1  protein_id AT1G51870.1p  transcript_id AT1G51870.1  
At1g51880	chr1:019273987	0.0	C/19273987-19274068,19273352-19273889,19272547-19273025,19272312-19272456,19272144-19272215,19271987-19272058,19271818-19271925,19271345-19271699,19271121-19271247,19270981-19271046,19270696-19270885,19270193-19270601	AT1G51880.1  CDS  gene_syn T14L22.9, T14L22_9  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat protein kinase, putative  note leucine-rich repeat protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT1G51860.1); Has 90619 Blast hits to 85752 proteins in 3131 species: Archae - 44; Bacteria - 7585; Metazoa - 37691; Fungi - 6590; Plants - 23968; Viruses - 412; Other Eukaryotes - 14329 (source: NCBI BLink).  protein_id AT1G51880.1p  transcript_id AT1G51880.1  protein_id AT1G51880.1p  transcript_id AT1G51880.1  
At1g51890	chr1:019278459	0.0	C/19278459-19278528,19277827-19278364,19277261-19277739,19277084-19277179,19276883-19276979,19276717-19276788,19276540-19276623,19276293-19276423,19275965-19276206,19275583-19275841,19275298-19275487,19274802-19275210	AT1G51890.1  CDS  gene_syn T14L22.10, T14L22_10  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat protein kinase, putative  note leucine-rich repeat protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT1G51860.1); Has 93379 Blast hits to 86322 proteins in 3145 species: Archae - 46; Bacteria - 7542; Metazoa - 37408; Fungi - 6645; Plants - 26711; Viruses - 308; Other Eukaryotes - 14719 (source: NCBI BLink).  protein_id AT1G51890.1p  transcript_id AT1G51890.1  protein_id AT1G51890.1p  transcript_id AT1G51890.1  
At1g51900	chr1:019282299	0.0	C/19282299-19282895,19281984-19282205,19281660-19281893,19281340-19281570,19281016-19281249,19280778-19280926,19279884-19280541	AT1G51900.1  CDS  gene_syn T14L22.11, T14L22_11  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14830.1); Has 10017 Blast hits to 6725 proteins in 437 species: Archae - 58; Bacteria - 546; Metazoa - 3585; Fungi - 545; Plants - 306; Viruses - 61; Other Eukaryotes - 4916 (source: NCBI BLink).  protein_id AT1G51900.1p  transcript_id AT1G51900.1  protein_id AT1G51900.1p  transcript_id AT1G51900.1  
At1g51910	chr1:019288304	0.0	C/19288304-19288385,19287691-19288228,19286809-19287290,19286407-19286551,19286238-19286309,19286087-19286158,19285931-19286014,19285685-19285830,19285354-19285583,19285156-19285282,19285021-19285086,19284753-19284942,19284277-19284673	AT1G51910.1  CDS  gene_syn T14L22.12, T14L22_12  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT1G51860.1); Has 85591 Blast hits to 81790 proteins in 2941 species: Archae - 44; Bacteria - 7046; Metazoa - 35803; Fungi - 6408; Plants - 22168; Viruses - 319; Other Eukaryotes - 13803 (source: NCBI BLink).  protein_id AT1G51910.1p  transcript_id AT1G51910.1  protein_id AT1G51910.1p  transcript_id AT1G51910.1  
At1g51913	chr1:019292930	0.0	W/19292930-19293035,19293122-19293249	AT1G51913.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 11 Blast hits to 11 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G51913.1p  transcript_id AT1G51913.1  protein_id AT1G51913.1p  transcript_id AT1G51913.1  
At1g51915	chr1:019293587	0.0	W/19293587-19293689,19293765-19293865	AT1G51915.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product cryptdin protein-related  note cryptdin protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: petal, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, 4 anthesis, petal differentiation and expansion stage; Has 11 Blast hits to 11 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G51915.1p  transcript_id AT1G51915.1  protein_id AT1G51915.1p  transcript_id AT1G51915.1  
At1g51920	chr1:019294229	0.0	W/19294229-19294334,19294449-19294579	AT1G51920.1  CDS  gene_syn T14L22.80, T14L22_80  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G51920.1p  transcript_id AT1G51920.1  protein_id AT1G51920.1p  transcript_id AT1G51920.1  
At1g51930	chr1:019294838	0.0	C/19294838-19295236	AT1G51930.1  CDS  gene_syn T14L22.90, T14L22_90  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G41450.1); Has 5808 Blast hits to 5793 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 1925; Fungi - 502; Plants - 2428; Viruses - 17; Other Eukaryotes - 936 (source: NCBI BLink).  protein_id AT1G51930.1p  transcript_id AT1G51930.1  protein_id AT1G51930.1p  transcript_id AT1G51930.1  
At1g51940	chr1:019298371	0.0	C/19298371-19298941,19298202-19298291,19297808-19298089,19297570-19297715,19297404-19297493,19297210-19297315,19296979-19297130,19296794-19296891,19296549-19296696,19296345-19296452,19296092-19296256	AT1G51940.1  CDS  gene_syn T14L22.13, T14L22_13  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process cell wall macromolecule catabolic process|GO:0016998||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein / peptidoglycan-binding LysM domain-containing protein  note protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation, cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), Protein kinase, ATP binding site (InterPro:IPR017441), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CERK1 (CHITIN ELICITOR RECEPTOR KINASE 1); kinase/ receptor signaling protein/ transmembrane receptor protein kinase (TAIR:AT3G21630.1); Has 84998 Blast hits to 84075 proteins in 3163 species: Archae - 45; Bacteria - 7603; Metazoa - 37390; Fungi - 6729; Plants - 18236; Viruses - 443; Other Eukaryotes - 14552 (source: NCBI BLink).  protein_id AT1G51940.1p  transcript_id AT1G51940.1  protein_id AT1G51940.1p  transcript_id AT1G51940.1  
At1g51950	chr1:019305670	0.0	W/19305670-19305941,19306218-19306513,19306597-19306729,19306933-19307000,19307096-19307130	AT1G51950.1  CDS  gene_syn IAA18, INDOLE-3-ACETIC ACID INDUCIBLE 18, T14L22.14, T14L22_14  gene IAA18  go_component nucleus|GO:0005634||IEA  go_process response to auxin stimulus|GO:0009733|12036262|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product IAA18 (INDOLE-3-ACETIC ACID INDUCIBLE 18); transcription factor  note INDOLE-3-ACETIC ACID INDUCIBLE 18 (IAA18); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to auxin stimulus; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: PAP1 (PHYTOCHROME-ASSOCIATED PROTEIN 1); transcription factor (TAIR:AT3G16500.1); Has 1127 Blast hits to 1119 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1127; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G51950.1p  transcript_id AT1G51950.1  protein_id AT1G51950.1p  transcript_id AT1G51950.1  
At1g51960	chr1:019310355	0.0	W/19310355-19310696,19310888-19311088,19311171-19311683	AT1G51960.1  CDS  gene_syn IQ-domain 27, IQD27, T14L22.17  gene IQD27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product IQD27 (IQ-domain 27); calmodulin binding  note IQ-domain 27 (IQD27); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, sperm cell; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQD26 (IQ-domain 26); calmodulin binding (TAIR:AT3G16490.1); Has 409 Blast hits to 404 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 4; Plants - 400; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G51960.1p  transcript_id AT1G51960.1  protein_id AT1G51960.1p  transcript_id AT1G51960.1  
At1g51965	chr1:019313387	0.0	C/19313387-19314145,19312078-19313271	AT1G51965.1  CDS  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: PGR3 (PROTON GRADIENT REGULATION 3) (TAIR:AT4G31850.1); Has 21191 Blast hits to 6126 proteins in 185 species: Archae - 5; Bacteria - 14; Metazoa - 565; Fungi - 542; Plants - 18830; Viruses - 0; Other Eukaryotes - 1235 (source: NCBI BLink).  protein_id AT1G51965.1p  transcript_id AT1G51965.1  protein_id AT1G51965.1p  transcript_id AT1G51965.1  
At1g51970	chr1:019314542	0.0	C/19314542-19314916	AT1G51970.1  CDS  gene_syn F5F19.3, F5F19_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10455.1); Has 11 Blast hits to 11 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G51970.1p  transcript_id AT1G51970.1  protein_id AT1G51970.1p  transcript_id AT1G51970.1  
At1g51980	chr1:019326733	0.0	C/19326733-19326771,19326177-19326422,19325803-19326099,19325541-19325708,19325271-19325438,19325091-19325168,19324919-19324985,19324695-19324792,19324391-19324460,19324221-19324291,19324051-19324100,19323828-19323940,19323692-19323738	AT1G51980.1  CDS  gene_syn F5F19.4, F5F19_4  go_component mitochondrion|GO:0005739|15276431|IDA  go_component mitochondrion|GO:0005739|17137349|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|14730085|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component mitochondrial respiratory chain complex III|GO:0005750|18189341|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process proteolysis|GO:0006508||ISS  go_function metalloendopeptidase activity|GO:0004222||ISS  product mitochondrial processing peptidase alpha subunit, putative  note mitochondrial processing peptidase alpha subunit, putative; FUNCTIONS IN: metalloendopeptidase activity, ATP binding; INVOLVED IN: proteolysis, response to salt stress; LOCATED IN: in 6 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M16, zinc-binding site (InterPro:IPR001431), Peptidase M16, C-terminal (InterPro:IPR007863), Peptidase M16, N-terminal (InterPro:IPR011765), Metalloenzyme, LuxS/M16 peptidase-like, metal-binding (InterPro:IPR011249), Peptidase M16, core (InterPro:IPR011237); BEST Arabidopsis thaliana protein match is: MPPalpha (mitochondrial processing peptidase alpha subunit); catalytic/ metal ion binding / metalloendopeptidase/ zinc ion binding (TAIR:AT3G16480.1); Has 4104 Blast hits to 4031 proteins in 871 species: Archae - 10; Bacteria - 1938; Metazoa - 533; Fungi - 396; Plants - 134; Viruses - 3; Other Eukaryotes - 1090 (source: NCBI BLink).  protein_id AT1G51980.1p  transcript_id AT1G51980.1  protein_id AT1G51980.1p  transcript_id AT1G51980.1  
At1g51980	chr1:019326733	0.0	C/19326733-19326771,19326177-19326422,19325803-19326099,19325541-19325708,19325271-19325438,19325091-19325168,19324919-19324985,19324695-19324792,19324391-19324460,19324221-19324291,19324051-19324100,19323929-19323932	AT1G51980.2  CDS  gene_syn F5F19.4, F5F19_4  go_component mitochondrion|GO:0005739|17137349|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|14730085|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component mitochondrial respiratory chain complex III|GO:0005750|18189341|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process proteolysis|GO:0006508||ISS  go_function metalloendopeptidase activity|GO:0004222||ISS  product mitochondrial processing peptidase alpha subunit, putative  note mitochondrial processing peptidase alpha subunit, putative; FUNCTIONS IN: metalloendopeptidase activity, ATP binding; INVOLVED IN: proteolysis, response to salt stress; LOCATED IN: mitochondrion, plasma membrane, plastid, mitochondrial respiratory chain complex III, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M16, zinc-binding site (InterPro:IPR001431), Peptidase M16, C-terminal (InterPro:IPR007863), Peptidase M16, N-terminal (InterPro:IPR011765), Metalloenzyme, LuxS/M16 peptidase-like, metal-binding (InterPro:IPR011249), Peptidase M16, core (InterPro:IPR011237); BEST Arabidopsis thaliana protein match is: MPPalpha (mitochondrial processing peptidase alpha subunit); catalytic/ metal ion binding / metalloendopeptidase/ zinc ion binding (TAIR:AT3G16480.1); Has 3988 Blast hits to 3918 proteins in 865 species: Archae - 10; Bacteria - 1898; Metazoa - 524; Fungi - 396; Plants - 132; Viruses - 3; Other Eukaryotes - 1025 (source: NCBI BLink).  protein_id AT1G51980.2p  transcript_id AT1G51980.2  protein_id AT1G51980.2p  transcript_id AT1G51980.2  
At1g51990	chr1:019330949	0.0	W/19330949-19331358,19331461-19331774,19332064-19332128,19332365-19332667	AT1G51990.1  CDS  gene_syn F5F19.5, F5F19_5  go_component cytosol|GO:0005829|9484457|TAS  go_process lignin biosynthetic process|GO:0009809|7770534|ISS  go_function O-methyltransferase activity|GO:0008171|7770534|ISS  product O-methyltransferase family 2 protein  note O-methyltransferase family 2 protein; FUNCTIONS IN: O-methyltransferase activity; INVOLVED IN: lignin biosynthetic process; LOCATED IN: cytosol; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: ATOMT1 (O-METHYLTRANSFERASE 1); caffeate O-methyltransferase/ myricetin 3 -O-methyltransferase/ quercetin 3-O-methyltransferase (TAIR:AT5G54160.1); Has 2276 Blast hits to 2274 proteins in 426 species: Archae - 0; Bacteria - 658; Metazoa - 87; Fungi - 514; Plants - 916; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT1G51990.1p  transcript_id AT1G51990.1  protein_id AT1G51990.1p  transcript_id AT1G51990.1  
At1g51990	chr1:019330949	0.0	W/19330949-19331374,19331477-19331774,19332064-19332128,19332365-19332667	AT1G51990.2  CDS  gene_syn F5F19.5, F5F19_5  go_component cytosol|GO:0005829|9484457|TAS  go_process lignin biosynthetic process|GO:0009809|7770534|ISS  go_function O-methyltransferase activity|GO:0008171|7770534|ISS  product O-methyltransferase family 2 protein  note O-methyltransferase family 2 protein; FUNCTIONS IN: O-methyltransferase activity; INVOLVED IN: lignin biosynthetic process; LOCATED IN: cytosol; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: ATOMT1 (O-METHYLTRANSFERASE 1); caffeate O-methyltransferase/ myricetin 3 -O-methyltransferase/ quercetin 3-O-methyltransferase (TAIR:AT5G54160.1); Has 2273 Blast hits to 2271 proteins in 424 species: Archae - 0; Bacteria - 654; Metazoa - 87; Fungi - 514; Plants - 916; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).  protein_id AT1G51990.2p  transcript_id AT1G51990.2  protein_id AT1G51990.2p  transcript_id AT1G51990.2  
At1g52000	chr1:019335557	0.0	C/19335557-19335700,19334147-19335484,19333352-19334062	AT1G52000.1  CDS  gene_syn F5F19.6, F5F19_6  go_component cellular_component|GO:0005575||ND  go_process response to salt stress|GO:0009651|11351099|IEP  go_function molecular_function|GO:0003674||ND  product jacalin lectin family protein  note jacalin lectin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: MBP1 (MYROSINASE-BINDING PROTEIN 1); protein binding (TAIR:AT1G52040.1); Has 138776 Blast hits to 45591 proteins in 2061 species: Archae - 382; Bacteria - 44225; Metazoa - 34835; Fungi - 8746; Plants - 9137; Viruses - 1952; Other Eukaryotes - 39499 (source: NCBI BLink).  protein_id AT1G52000.1p  transcript_id AT1G52000.1  protein_id AT1G52000.1p  transcript_id AT1G52000.1  
At1g52010	chr1:019337048	0.0	W/19337048-19339384	AT1G52010.1  mRNA_TE_gene  pseudo  gene_syn F5F19.7, F5F19_7  note Transposable element gene, Mutator-like transposase family, has a 2.8e-81 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g52020	chr1:019339341	0.0	C/19339341-19345112	AT1G52020.1  mRNA_TE_gene  pseudo  gene_syn F5F19.8, F5F19_8  note Transposable element gene, pseudogene, Ulp1 protease family, contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain; similar to At3g24380, At5g36840, At5g35010, At3g42740, At4g05290, At2g14770, At3g43390, At2g05560, At4g08880, At1g34730, At1g27790, At1g34740, At1g27780, At5g36850, At3g42730, At3g24390, At4g05280, At1g25886, At4g03300  
At1g52030	chr1:019348094	0.0	C/19348094-19348282,19347544-19348005,19346446-19347453,19346090-19346359	AT1G52030.1  CDS  gene_syn F-ATMBP, F5F19.9, F5F19_9, MBP1.2, MBP2, MYROSINASE BINDING PROTEIN, MYROSINASE-BINDING PROTEIN 2  gene MBP2  function Similar to myrosinase binding proteins which may be involved in metabolizing glucosinolates and forming defense compounds to protect against herbivory. Also similar to lectins and other agglutinating factors. Expressed only in flowers.  go_component thioglucosidase complex|GO:0010169|10682349|ISS  go_process defense response|GO:0006952|11678272|TAS  go_process cell adhesion|GO:0007155|11678272|TAS  go_process response to wounding|GO:0009611|17675405|IEP  go_process flower development|GO:0009908|11678272|TAS  go_function sugar binding|GO:0005529|11678272|TAS  go_function thioglucosidase binding|GO:0010180|10682349|ISS  product MBP2 (MYROSINASE-BINDING PROTEIN 2); sugar binding / thioglucosidase binding  note MYROSINASE-BINDING PROTEIN 2 (MBP2); FUNCTIONS IN: sugar binding, thioglucosidase binding; INVOLVED IN: flower development, cell adhesion, response to wounding, defense response; LOCATED IN: thioglucosidase complex; EXPRESSED IN: fruit, flower; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: MBP1 (MYROSINASE-BINDING PROTEIN 1); protein binding (TAIR:AT1G52040.1); Has 57818 Blast hits to 14869 proteins in 1030 species: Archae - 330; Bacteria - 16662; Metazoa - 8939; Fungi - 3034; Plants - 9740; Viruses - 2714; Other Eukaryotes - 16399 (source: NCBI BLink).  protein_id AT1G52030.1p  transcript_id AT1G52030.1  protein_id AT1G52030.1p  transcript_id AT1G52030.1  
At1g52030	chr1:019348094	0.0	C/19348094-19348282,19347544-19348005,19346446-19347453,19346090-19346359	AT1G52030.2  CDS  gene_syn F-ATMBP, F5F19.9, F5F19_9, MBP1.2, MBP2, MYROSINASE BINDING PROTEIN, MYROSINASE-BINDING PROTEIN 2  gene MBP2  function Similar to myrosinase binding proteins which may be involved in metabolizing glucosinolates and forming defense compounds to protect against herbivory. Also similar to lectins and other agglutinating factors. Expressed only in flowers.  go_component thioglucosidase complex|GO:0010169|10682349|ISS  go_process defense response|GO:0006952|11678272|TAS  go_process cell adhesion|GO:0007155|11678272|TAS  go_process response to wounding|GO:0009611|17675405|IEP  go_process flower development|GO:0009908|11678272|TAS  go_function sugar binding|GO:0005529|11678272|TAS  go_function thioglucosidase binding|GO:0010180|10682349|ISS  product MBP2 (MYROSINASE-BINDING PROTEIN 2); sugar binding / thioglucosidase binding  note MYROSINASE-BINDING PROTEIN 2 (MBP2); FUNCTIONS IN: sugar binding, thioglucosidase binding; INVOLVED IN: flower development, cell adhesion, response to wounding, defense response; LOCATED IN: thioglucosidase complex; EXPRESSED IN: fruit, flower; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: MBP1 (MYROSINASE-BINDING PROTEIN 1); protein binding (TAIR:AT1G52040.1); Has 57818 Blast hits to 14869 proteins in 1030 species: Archae - 330; Bacteria - 16662; Metazoa - 8939; Fungi - 3034; Plants - 9740; Viruses - 2714; Other Eukaryotes - 16399 (source: NCBI BLink).  protein_id AT1G52030.2p  transcript_id AT1G52030.2  protein_id AT1G52030.2p  transcript_id AT1G52030.2  
At1g52040	chr1:019352369	0.0	C/19352369-19352578,19350949-19351857,19350595-19350864	AT1G52040.1  CDS  gene_syn ATMBP, MBP1, MYROSINASE-BINDING PROTEIN 1  gene MBP1  function Encodes myrosinase-binding protein expressed in flowers.  go_component nucleus|GO:0005634|14617066|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_process defense response|GO:0006952|11678272|TAS  go_function protein binding|GO:0005515|11678272|ISS  product MBP1 (MYROSINASE-BINDING PROTEIN 1); protein binding  note MYROSINASE-BINDING PROTEIN 1 (MBP1); FUNCTIONS IN: protein binding; INVOLVED IN: defense response; LOCATED IN: nucleus, vacuole; EXPRESSED IN: vascular tissue, fruit, flower, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: MBP2 (MYROSINASE-BINDING PROTEIN 2); sugar binding / thioglucosidase binding (TAIR:AT1G52030.2); Has 1455 Blast hits to 541 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1453; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G52040.1p  transcript_id AT1G52040.1  protein_id AT1G52040.1p  transcript_id AT1G52040.1  
At1g52050	chr1:019356703	0.0	C/19356703-19356748,19356172-19356383,19355527-19355952,19355106-19355363	AT1G52050.1  CDS  gene_syn F5F19.11, F5F19_11  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product jacalin lectin family protein  note jacalin lectin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin lectin family protein (TAIR:AT1G52070.1); Has 1057 Blast hits to 471 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1054; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G52050.1p  transcript_id AT1G52050.1  protein_id AT1G52050.1p  transcript_id AT1G52050.1  
At1g52060	chr1:019360606	0.0	C/19360606-19360651,19360110-19360324,19359508-19359936,19359039-19359293	AT1G52060.1  CDS  gene_syn F5F19.12, F5F19_12  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin lectin family protein (TAIR:AT1G52070.1); Has 1057 Blast hits to 529 proteins in 40 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 0; Plants - 1048; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G52060.1p  transcript_id AT1G52060.1  protein_id AT1G52060.1p  transcript_id AT1G52060.1  
At1g52070	chr1:019366855	0.0	C/19366855-19366900,19366225-19366439,19365641-19366072,19365140-19365394	AT1G52070.1  CDS  gene_syn F5F19.13, F5F19_13  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product jacalin lectin family protein  note jacalin lectin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52060.1); Has 1212 Blast hits to 567 proteins in 45 species: Archae - 0; Bacteria - 2; Metazoa - 25; Fungi - 0; Plants - 1181; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G52070.1p  transcript_id AT1G52070.1  protein_id AT1G52070.1p  transcript_id AT1G52070.1  
At1g52080	chr1:019369788	0.0	W/19369788-19369944,19370042-19370079,19370266-19371030,19371101-19371862	AT1G52080.1  CDS  gene_syn AR791, F5F19.14, F5F19_14  gene AR791  function unknown function  go_component endomembrane system|GO:0012505||IEA  go_function actin binding|GO:0003779||ISS  product AR791; actin binding  note AR791; FUNCTIONS IN: actin binding; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1) (TAIR:AT3G25690.1); Has 20138 Blast hits to 13287 proteins in 680 species: Archae - 282; Bacteria - 1100; Metazoa - 10668; Fungi - 1263; Plants - 628; Viruses - 145; Other Eukaryotes - 6052 (source: NCBI BLink).  protein_id AT1G52080.1p  transcript_id AT1G52080.1  protein_id AT1G52080.1p  transcript_id AT1G52080.1  
At1g52085	chr1:019372155	0.0	C/19372155-19372421	AT1G52085.1  pseudogenic_transcript  pseudo  gene_syn F5F19.24  note pseudogene, similar to jasmonate inducible protein, blastp match of 51% identity and 1.1e-11 P-value to GP|1883006|emb|CAA72271.1||Y11483 jasmonate inducible protein {Brassica napus}  
At1g52087	chr1:019375642	0.0	W/19375642-19378214	AT1G52087.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G35110.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G19320.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G36020.1); similar to hypothetical protein 23.t00036 [Brassica oleracea] (GB:ABD65624.1)  
At1g52090	chr1:019378143	0.0	C/19378143-19378487	AT1G52090.1  mRNA_TE_gene  pseudo  gene_syn F5F19.23, F5F19_23  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G27590.1)  
At1g52100	chr1:019384926	0.0	C/19384926-19385123,19384392-19384820,19383687-19384144,19383479-19383539	AT1G52100.1  CDS  gene_syn F5F19.16, F5F19_16  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product jacalin lectin family protein  note jacalin lectin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: shoot, cotyledon, hypocotyl, leaf; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin lectin family protein (TAIR:AT5G35950.1); Has 1199 Blast hits to 527 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1195; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G52100.1p  transcript_id AT1G52100.1  protein_id AT1G52100.1p  transcript_id AT1G52100.1  
At1g52110	chr1:019389613	0.0	C/19389613-19389740,19389449-19389515,19388949-19389065,19388433-19388862,19387724-19388121,19387156-19387605,19386789-19387046	AT1G52110.1  CDS  gene_syn F5F19.17, F5F19_17  product unknown protein  note CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin lectin family protein (TAIR:AT5G49870.1).  protein_id AT1G52110.1p  transcript_id AT1G52110.1  protein_id AT1G52110.1p  transcript_id AT1G52110.1  
At1g52120	chr1:019397654	0.0	C/19397654-19397857,19397126-19397575,19396603-19397037,19396200-19396490	AT1G52120.1  CDS  gene_syn F5F19.18, F5F19_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin lectin family protein (TAIR:AT1G52130.1); Has 983 Blast hits to 478 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 981; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G52120.1p  transcript_id AT1G52120.1  protein_id AT1G52120.1p  transcript_id AT1G52120.1  
At1g52130	chr1:019402157	0.0	C/19402157-19402363,19401618-19402058,19401049-19401513,19400619-19400957	AT1G52130.1  CDS  gene_syn F5F19.19, F5F19_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product jacalin lectin family protein  note jacalin lectin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52120.1); Has 981 Blast hits to 434 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 980; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G52130.1p  transcript_id AT1G52130.1  protein_id AT1G52130.1p  transcript_id AT1G52130.1  
At1g52140	chr1:019407559	0.0	C/19407559-19408185	AT1G52140.1  CDS  gene_syn F5F19.20, F5F19_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16330.1); Has 65 Blast hits to 65 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G52140.1p  transcript_id AT1G52140.1  protein_id AT1G52140.1p  transcript_id AT1G52140.1  
At1g52150	chr1:019413753	0.0	C/19413753-19413961,19413484-19413643,19413262-19413362,19413075-19413165,19412890-19412985,19412673-19412786,19412503-19412586,19412273-19412428,19412117-19412191,19411910-19412022,19411633-19411822,19411371-19411547,19411203-19411283,19410985-19411119,19410583-19410908,19410385-19410490,19410118-19410288	AT1G52150.3  CDS  gene_syn ATHB-15, ATHB15, CNA, CORONA, F5F19.21, F5F19_21, ICU4, INCURVATA 4  gene ATHB-15  function Member of the class III HD-ZIP protein family. Contains homeodomain and leucine zipper domain. Critical for vascular development and negatively regulates vascular cell differentiation.  go_component nucleus|GO:0005634|16581911|IDA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process determination of bilateral symmetry|GO:0009855|15598805|IMP  go_process organ morphogenesis|GO:0009887|15705957|IMP  go_process leaf morphogenesis|GO:0009965|11063708|IMP  go_process meristem initiation|GO:0010014|15598805|IMP  go_process meristem maintenance|GO:0010073|15705957|TAS  go_process regulation of meristem growth|GO:0010075|15705957|IMP  go_process phloem or xylem histogenesis|GO:0010087|15773855|IMP  go_process determination of dorsal identity|GO:0048263|17237362|IMP  go_process integument development|GO:0080060|19054366|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11402194|TAS  product ATHB-15; DNA binding / transcription factor  note ATHB-15; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 10 processes; LOCATED IN: nucleus; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), MEKHLA (InterPro:IPR013978), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ATHB-8 (HOMEOBOX GENE 8); DNA binding / transcription factor (TAIR:AT4G32880.1); Has 2352 Blast hits to 2304 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 673; Fungi - 53; Plants - 1602; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT1G52150.3p  transcript_id AT1G52150.3  protein_id AT1G52150.3p  transcript_id AT1G52150.3  
At1g52150	chr1:019413753	0.0	C/19413753-19413961,19413484-19413643,19413262-19413362,19413075-19413165,19412890-19412985,19412673-19412786,19412503-19412586,19412273-19412428,19412117-19412191,19411910-19412022,19411633-19411822,19411371-19411547,19411203-19411283,19410985-19411119,19410583-19410908,19410385-19410490,19410139-19410288,19409913-19410059	AT1G52150.1  CDS  gene_syn ATHB-15, ATHB15, CNA, CORONA, F5F19.21, F5F19_21, ICU4, INCURVATA 4  gene ATHB-15  function Member of the class III HD-ZIP protein family. Contains homeodomain and leucine zipper domain. Critical for vascular development and negatively regulates vascular cell differentiation.  go_component nucleus|GO:0005634|16581911|IDA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process determination of bilateral symmetry|GO:0009855|15598805|IMP  go_process organ morphogenesis|GO:0009887|15705957|IMP  go_process leaf morphogenesis|GO:0009965|11063708|IMP  go_process meristem initiation|GO:0010014|15598805|IMP  go_process meristem maintenance|GO:0010073|15705957|TAS  go_process regulation of meristem growth|GO:0010075|15705957|IMP  go_process phloem or xylem histogenesis|GO:0010087|15773855|IMP  go_process determination of dorsal identity|GO:0048263|17237362|IMP  go_process integument development|GO:0080060|19054366|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11402194|TAS  product ATHB-15; DNA binding / transcription factor  note ATHB-15; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 10 processes; LOCATED IN: nucleus; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), MEKHLA (InterPro:IPR013978), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ATHB-8 (HOMEOBOX GENE 8); DNA binding / transcription factor (TAIR:AT4G32880.1); Has 2374 Blast hits to 2326 proteins in 203 species: Archae - 0; Bacteria - 18; Metazoa - 673; Fungi - 53; Plants - 1606; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT1G52150.1p  transcript_id AT1G52150.1  protein_id AT1G52150.1p  transcript_id AT1G52150.1  
At1g52150	chr1:019413753	0.0	C/19413753-19413961,19413484-19413643,19413262-19413362,19413075-19413165,19412890-19412985,19412673-19412786,19412503-19412586,19412273-19412428,19412117-19412191,19411910-19412022,19411633-19411822,19411371-19411547,19411203-19411283,19410985-19411119,19410583-19410911,19410385-19410490,19410139-19410288,19409913-19410059	AT1G52150.2  CDS  gene_syn ATHB-15, ATHB15, CNA, CORONA, F5F19.21, F5F19_21, ICU4, INCURVATA 4  gene ATHB-15  function Member of the class III HD-ZIP protein family. Contains homeodomain and leucine zipper domain. Critical for vascular development and negatively regulates vascular cell differentiation.  go_component nucleus|GO:0005634|16581911|IDA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process determination of bilateral symmetry|GO:0009855|15598805|IMP  go_process organ morphogenesis|GO:0009887|15705957|IMP  go_process leaf morphogenesis|GO:0009965|11063708|IMP  go_process meristem initiation|GO:0010014|15598805|IMP  go_process meristem maintenance|GO:0010073|15705957|TAS  go_process regulation of meristem growth|GO:0010075|15705957|IMP  go_process phloem or xylem histogenesis|GO:0010087|15773855|IMP  go_process determination of dorsal identity|GO:0048263|17237362|IMP  go_process integument development|GO:0080060|19054366|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11402194|TAS  product ATHB-15; DNA binding / transcription factor  note ATHB-15; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 10 processes; LOCATED IN: nucleus; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), MEKHLA (InterPro:IPR013978), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ATHB-8 (HOMEOBOX GENE 8); DNA binding / transcription factor (TAIR:AT4G32880.1); Has 2374 Blast hits to 2326 proteins in 203 species: Archae - 0; Bacteria - 18; Metazoa - 673; Fungi - 53; Plants - 1606; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT1G52150.2p  transcript_id AT1G52150.2  protein_id AT1G52150.2p  transcript_id AT1G52150.2  
At1g52155	chr1:019418306	0.0	W/19418306-19418497,19418590-19418744,19418829-19418874,19418958-19419049,19419138-19419234,19419376-19419432,19419523-19419591	AT1G52155.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 24 Blast hits to 24 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G52155.1p  transcript_id AT1G52155.1  protein_id AT1G52155.1p  transcript_id AT1G52155.1  
At1g52160	chr1:019424105	0.0	C/19424105-19424419,19423933-19424022,19423804-19423848,19423668-19423722,19423531-19423574,19423094-19423453,19422735-19423000,19422496-19422643,19422363-19422413,19421308-19422279,19420911-19421237	AT1G52160.1  CDS  gene_syn F9I5.1, F9I5_1, TRNASE Z 3, TRZ3  gene TRZ3  function Encodes a tRNase Z.  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_process tRNA 3 -end processing|GO:0042780|19411372|IDA  go_function catalytic activity|GO:0003824||ISS  go_function 3 -tRNA processing endoribonuclease activity|GO:0042781|19411372|IDA  product TRZ3 (TRNASE Z 3); 3 -tRNA processing endoribonuclease/ catalytic  note TRNASE Z 3 (TRZ3); FUNCTIONS IN: 3 -tRNA processing endoribonuclease activity, catalytic activity; INVOLVED IN: tRNA 3 -end processing, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279); BEST Arabidopsis thaliana protein match is: TRZ4 (TRNASE Z 4); 3 -tRNA processing endoribonuclease/ catalytic (TAIR:AT3G16260.1); Has 3831 Blast hits to 2594 proteins in 872 species: Archae - 287; Bacteria - 2227; Metazoa - 238; Fungi - 159; Plants - 48; Viruses - 0; Other Eukaryotes - 872 (source: NCBI BLink).  protein_id AT1G52160.1p  transcript_id AT1G52160.1  protein_id AT1G52160.1p  transcript_id AT1G52160.1  
At1g52170	chr1:019424555	0.0	W/19424555-19424628	AT1G52170.1  tRNA  gene_syn 60056.TRNA-ASN-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asn (anticodon: GTT)  transcript_id AT1G52170.1  
At1g52180	chr1:019425821	0.0	C/19425821-19425928,19424944-19425210	AT1G52180.1  CDS  gene_syn F9I5.3, F9I5_3  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_function water channel activity|GO:0015250||ISS  product major intrinsic family protein / MIP family protein  note major intrinsic family protein / MIP family protein; FUNCTIONS IN: water channel activity; INVOLVED IN: transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: DELTA-TIP; ammonia transporter/ methylammonium transmembrane transporter/ water channel (TAIR:AT3G16240.1); Has 1684 Blast hits to 1684 proteins in 342 species: Archae - 6; Bacteria - 364; Metazoa - 491; Fungi - 40; Plants - 730; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT1G52180.1p  transcript_id AT1G52180.1  protein_id AT1G52180.1p  transcript_id AT1G52180.1  
At1g52185	chr1:019430078	0.0	C/19430078-19430277	AT1G52185.1  miRNA  gene_syn MICRORNA406, MIR406  gene MIR406  function Encodes a microRNA. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence:TAGAATGCTATTGTAATCCAG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR406 (MICRORNA406); miRNA  transcript_id AT1G52185.1  
At1g52190	chr1:019434671	0.0	W/19434671-19434767,19434860-19435077,19436807-19437366,19437725-19438673	AT1G52190.1  CDS  gene_syn F9I5.4, F9I5_4  go_component membrane|GO:0016020||IEA  go_process oligopeptide transport|GO:0006857||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region, conserved site (InterPro:IPR018456), TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT3G16180.1); Has 3193 Blast hits to 3051 proteins in 570 species: Archae - 0; Bacteria - 1094; Metazoa - 520; Fungi - 248; Plants - 1098; Viruses - 0; Other Eukaryotes - 233 (source: NCBI BLink).  protein_id AT1G52190.1p  transcript_id AT1G52190.1  protein_id AT1G52190.1p  transcript_id AT1G52190.1  
At1g52191	chr1:019441393	0.0	C/19441393-19441400,19440520-19440601,19440020-19440157,19439367-19439555	AT1G52191.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: thioesterase family protein (TAIR:AT3G16175.1); Has 195 Blast hits to 195 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 66; Fungi - 28; Plants - 97; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G52191.1p  transcript_id AT1G52191.1  protein_id AT1G52191.1p  transcript_id AT1G52191.1  
At1g52200	chr1:019443209	0.0	C/19443209-19443407,19443029-19443100,19442726-19442938,19442271-19442359	AT1G52200.1  CDS  gene_syn F9I5.19, F9I5_19  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: plasma membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18470.1); Has 371 Blast hits to 370 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 47; Plants - 295; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G52200.1p  transcript_id AT1G52200.1  protein_id AT1G52200.1p  transcript_id AT1G52200.1  
At1g52210	chr1:019446190	0.0	W/19446190-19450533	AT1G52210.1  mRNA_TE_gene  pseudo  gene_syn F9I5.16  note Transposable element gene, copia-like retrotransposon family, has a 7.7e-186 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At1g52211	chr1:019450845	0.0	C/19450845-19452032	AT1G52211.1  pseudogenic_transcript  pseudo  function Pseudogene of AT2G02180; TOM3 (tobamovirus multiplication protein 3)  
At1g52220	chr1:019454378	0.0	C/19454378-19454605,19454032-19454094,19453907-19453944,19453770-19453824	AT1G52220.3  CDS  gene_syn F9I5.10, F9I5_10  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PSI-P (PHOTOSYSTEM I P SUBUNIT); DNA binding (TAIR:AT2G46820.2); Has 172 Blast hits to 172 proteins in 28 species: Archae - 0; Bacteria - 44; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G52220.3p  transcript_id AT1G52220.3  protein_id AT1G52220.3p  transcript_id AT1G52220.3  
At1g52220	chr1:019454378	0.0	C/19454378-19454605,19454187-19454273,19454032-19454094,19453907-19453944,19453770-19453824	AT1G52220.1  CDS  gene_syn F9I5.10, F9I5_10  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PSI-P (PHOTOSYSTEM I P SUBUNIT); DNA binding (TAIR:AT2G46820.2); Has 203 Blast hits to 203 proteins in 35 species: Archae - 0; Bacteria - 66; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G52220.1p  transcript_id AT1G52220.1  protein_id AT1G52220.1p  transcript_id AT1G52220.1  
At1g52220	chr1:019454381	0.0	C/19454381-19454605,19454187-19454273,19454032-19454094,19453907-19453944,19453770-19453824	AT1G52220.2  CDS  gene_syn F9I5.10, F9I5_10  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PSI-P (PHOTOSYSTEM I P SUBUNIT); DNA binding (TAIR:AT2G46820.2); Has 203 Blast hits to 203 proteins in 35 species: Archae - 0; Bacteria - 66; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G52220.2p  transcript_id AT1G52220.2  protein_id AT1G52220.2p  transcript_id AT1G52220.2  
At1g52230	chr1:019454902	0.0	W/19454902-19455032,19455126-19455252,19455329-19455508	AT1G52230.1  CDS  gene_syn F9I5.11, F9I5_11, PHOTOSYSTEM I REACTION CENTER SUBUNIT VI-2, PHOTOSYSTEM I SUBUNIT H-2, PHOTOSYSTEM I SUBUNIT H2, PSAH-2, PSAH2, PSI-H  gene PSAH2  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process photosynthesis|GO:0015979||IEA  go_component photosystem I reaction center|GO:0009538||ISS  go_component plastoglobule|GO:0010287|16461379|IDA  go_process photosynthesis|GO:0015979||ISS  go_function molecular_function|GO:0003674||ND  product PSAH2 (PHOTOSYSTEM I SUBUNIT H2)  note PHOTOSYSTEM I SUBUNIT H2 (PSAH2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre subunit VI (InterPro:IPR004928); BEST Arabidopsis thaliana protein match is: PSAH-1 (photosystem I subunit H-1) (TAIR:AT3G16140.1); Has 72 Blast hits to 72 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G52230.1p  transcript_id AT1G52230.1  protein_id AT1G52230.1p  transcript_id AT1G52230.1  
At1g52240	chr1:019459098	0.0	C/19459098-19459235,19458844-19458990	AT1G52240.2  CDS  gene_syn ATROPGEF11, F9I5.12, F9I5_12, RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 11, ROPGEF11  gene ROPGEF11  function Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily .  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based process|GO:0007017||IEA  go_function Rho guanyl-nucleotide exchange factor activity|GO:0005089|15980860|ISS  product ROPGEF11 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 11); Rho guanyl-nucleotide exchange factor  note RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 11 (ROPGEF11); FUNCTIONS IN: Rho guanyl-nucleotide exchange factor activity; INVOLVED IN: microtubule-based process; LOCATED IN: microtubule associated complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Dynein light chain, type 1 and 2 (InterPro:IPR001372); BEST Arabidopsis thaliana protein match is: dynein light chain, putative (TAIR:AT3G16120.1).  protein_id AT1G52240.2p  transcript_id AT1G52240.2  protein_id AT1G52240.2p  transcript_id AT1G52240.2  
At1g52240	chr1:019459098	0.0	C/19459098-19459235,19458952-19458990,19458820-19458860,19458680-19458713,19457569-19457818,19457331-19457447,19457008-19457237,19456656-19456919,19456248-19456568,19455766-19456155	AT1G52240.1  CDS  gene_syn ATROPGEF11, F9I5.12, F9I5_12, RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 11, ROPGEF11  gene ROPGEF11  function Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily .  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based process|GO:0007017||IEA  go_function Rho guanyl-nucleotide exchange factor activity|GO:0005089|15980860|ISS  product ROPGEF11 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 11); Rho guanyl-nucleotide exchange factor  note RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 11 (ROPGEF11); FUNCTIONS IN: Rho guanyl-nucleotide exchange factor activity; INVOLVED IN: microtubule-based process; LOCATED IN: microtubule associated complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512), Dynein light chain, type 1 and 2 (InterPro:IPR001372); BEST Arabidopsis thaliana protein match is: ROPGEF13; Rho guanyl-nucleotide exchange factor (TAIR:AT3G16130.1); Has 169 Blast hits to 169 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 169; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G52240.1p  transcript_id AT1G52240.1  protein_id AT1G52240.1p  transcript_id AT1G52240.1  
At1g52260	chr1:019460694	0.0	W/19460694-19461208,19461295-19461424,19461499-19461664,19461768-19461886,19461976-19462056,19462148-19462237,19462343-19462414,19462508-19462576,19462689-19462769,19462868-19463002,19463079-19463135,19463248-19463346	AT1G52260.1  CDS  gene_syn ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, ATPDI3, ATPDIL1-5, F19K6.17, F19K6_17, PDI-LIKE 1-5, PDI3, PROTEIN DISULFIDE ISOMERASE 3  gene ATPDIL1-5  function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin).  go_process cell redox homeostasis|GO:0045454||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_function protein disulfide isomerase activity|GO:0003756|18574595|ISS  product ATPDIL1-5 (PDI-LIKE 1-5); protein disulfide isomerase  note PDI-LIKE 1-5 (ATPDIL1-5); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATPDIL1-6 (PDI-LIKE 1-6); protein disulfide isomerase (TAIR:AT3G16110.1); Has 5864 Blast hits to 4141 proteins in 705 species: Archae - 20; Bacteria - 961; Metazoa - 2390; Fungi - 556; Plants - 678; Viruses - 1; Other Eukaryotes - 1258 (source: NCBI BLink).  protein_id AT1G52260.1p  transcript_id AT1G52260.1  protein_id AT1G52260.1p  transcript_id AT1G52260.1  
At1g52270	chr1:019463913	0.0	C/19463913-19464299	AT1G52270.1  CDS  gene_syn F19K6.11, F19K6_11  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28310.1); Has 15 Blast hits to 15 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G52270.1p  transcript_id AT1G52270.1  protein_id AT1G52270.1p  transcript_id AT1G52270.1  
At1g52280	chr1:019469397	0.0	C/19469397-19469449,19469280-19469306,19469087-19469186,19468729-19468875,19468547-19468627,19468323-19468468,19468150-19468216	AT1G52280.1  CDS  gene_syn Arabidopsis Rab GTPase homolog G3d, AtRABG3d, F19K6.10, F19K6_10  gene AtRABG3d  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product AtRABG3d (Arabidopsis Rab GTPase homolog G3d); GTP binding  note Arabidopsis Rab GTPase homolog G3d (AtRABG3d); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C); GTP binding (TAIR:AT3G16100.1); Has 21039 Blast hits to 21013 proteins in 620 species: Archae - 22; Bacteria - 123; Metazoa - 11513; Fungi - 2748; Plants - 1781; Viruses - 19; Other Eukaryotes - 4833 (source: NCBI BLink).  protein_id AT1G52280.1p  transcript_id AT1G52280.1  protein_id AT1G52280.1p  transcript_id AT1G52280.1  
At1g52290	chr1:019472026	0.0	C/19472026-19472362,19471598-19471948,19471426-19471512,19471273-19471343,19471119-19471195,19470879-19471029,19470652-19470813,19470251-19470544	AT1G52290.1  CDS  gene_syn F19K6.9, F19K6_9  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function ATP binding|GO:0005524||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATPERK1 (PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1); ATP binding / protein kinase (TAIR:AT3G24550.1); Has 84708 Blast hits to 83704 proteins in 3065 species: Archae - 46; Bacteria - 7953; Metazoa - 37310; Fungi - 6457; Plants - 18280; Viruses - 385; Other Eukaryotes - 14277 (source: NCBI BLink).  protein_id AT1G52290.1p  transcript_id AT1G52290.1  protein_id AT1G52290.1p  transcript_id AT1G52290.1  
At1g52300	chr1:019476150	0.0	C/19476150-19476152,19475912-19476047,19475366-19475467,19475213-19475259	AT1G52300.1  CDS  gene_syn F19K6.12, F19K6_12  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L37 (RPL37B)  note 60S ribosomal protein L37 (RPL37B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, ribosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L37e, conserved site (InterPro:IPR018267), Ribosomal protein, zinc-binding (InterPro:IPR011332), Ribosomal protein L37ae/L37e, core (InterPro:IPR011331), Ribosomal protein L37e (InterPro:IPR001569); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L37 (RPL37C) (TAIR:AT3G16080.1); Has 707 Blast hits to 707 proteins in 247 species: Archae - 202; Bacteria - 0; Metazoa - 220; Fungi - 103; Plants - 72; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT1G52300.1p  transcript_id AT1G52300.1  protein_id AT1G52300.1p  transcript_id AT1G52300.1  
At1g52310	chr1:019478401	0.0	W/19478401-19478487,19478654-19478708,19478787-19479218,19479310-19479874,19479943-19480462	AT1G52310.1  CDS  gene_syn F19K6.8, F19K6_8  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein / C-type lectin domain-containing protein  note protein kinase family protein / C-type lectin domain-containing protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C-type lectin (InterPro:IPR001304), Protein kinase, core (InterPro:IPR000719), C-type lectin fold (InterPro:IPR016187), Tyrosine protein kinase, active site (InterPro:IPR008266), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), C-type lectin-like (InterPro:IPR016186); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G09010.1); Has 70974 Blast hits to 69959 proteins in 2437 species: Archae - 34; Bacteria - 6499; Metazoa - 32002; Fungi - 4291; Plants - 17099; Viruses - 244; Other Eukaryotes - 10805 (source: NCBI BLink).  protein_id AT1G52310.1p  transcript_id AT1G52310.1  protein_id AT1G52310.1p  transcript_id AT1G52310.1  
At1g52315	chr1:019481212	0.0	W/19481212-19481252,19481346-19481478,19481565-19481668,19481752-19481896,19481982-19482125,19482198-19482674	AT1G52315.1  CDS  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79910.1); Has 338 Blast hits to 338 proteins in 92 species: Archae - 0; Bacteria - 2; Metazoa - 124; Fungi - 45; Plants - 146; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G52315.1p  transcript_id AT1G52315.1  protein_id AT1G52315.1p  transcript_id AT1G52315.1  
At1g52320	chr1:019484421	0.0	W/19484421-19485594,19485673-19485848,19486074-19486297,19486382-19487204	AT1G52320.2  CDS  gene_syn F19K6.7, F19K6_7  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25590.1); Has 8111 Blast hits to 6764 proteins in 511 species: Archae - 9; Bacteria - 475; Metazoa - 3444; Fungi - 1217; Plants - 1004; Viruses - 207; Other Eukaryotes - 1755 (source: NCBI BLink).  protein_id AT1G52320.2p  transcript_id AT1G52320.2  protein_id AT1G52320.2p  transcript_id AT1G52320.2  
At1g52320	chr1:019485399	0.0	W/19485399-19485594,19485673-19485848,19486074-19486297,19486382-19487204	AT1G52320.1  CDS  gene_syn F19K6.7, F19K6_7  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25590.1); Has 282 Blast hits to 282 proteins in 43 species: Archae - 5; Bacteria - 5; Metazoa - 38; Fungi - 2; Plants - 209; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G52320.1p  transcript_id AT1G52320.1  protein_id AT1G52320.1p  transcript_id AT1G52320.1  
At1g52320	chr1:019485399	0.0	W/19485399-19485594,19485673-19485848,19486074-19486297,19486382-19487204	AT1G52320.3  CDS  gene_syn F19K6.7, F19K6_7  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25590.1); Has 276 Blast hits to 274 proteins in 41 species: Archae - 5; Bacteria - 3; Metazoa - 34; Fungi - 2; Plants - 211; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G52320.3p  transcript_id AT1G52320.3  protein_id AT1G52320.3p  transcript_id AT1G52320.3  
At1g52320	chr1:019485399	0.0	W/19485399-19485594,19485673-19485848,19486074-19486297,19486382-19487204	AT1G52320.4  CDS  gene_syn F19K6.7, F19K6_7  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25590.1); Has 276 Blast hits to 274 proteins in 41 species: Archae - 5; Bacteria - 3; Metazoa - 34; Fungi - 2; Plants - 211; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G52320.4p  transcript_id AT1G52320.4  protein_id AT1G52320.4p  transcript_id AT1G52320.4  
At1g52325	chr1:019488286	0.0	C/19488286-19488418,19487793-19488097	AT1G52325.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891); BEST Arabidopsis thaliana protein match is: MIF4G domain-containing protein / MA3 domain-containing protein (TAIR:AT1G80930.1); Has 489 Blast hits to 294 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 254; Fungi - 122; Plants - 51; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT1G52325.1p  transcript_id AT1G52325.1  protein_id AT1G52325.1p  transcript_id AT1G52325.1  
At1g52330	chr1:019488962	0.0	W/19488962-19489531,19489689-19489763	AT1G52330.1  CDS  gene_syn F19K6.6, F19K6_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13270.1); Has 67 Blast hits to 66 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G52330.1p  transcript_id AT1G52330.1  protein_id AT1G52330.1p  transcript_id AT1G52330.1  
At1g52330	chr1:019488962	0.0	W/19488962-19489645	AT1G52330.2  CDS  gene_syn F19K6.6, F19K6_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13270.1); Has 56 Blast hits to 56 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G52330.2p  transcript_id AT1G52330.2  protein_id AT1G52330.2p  transcript_id AT1G52330.2  
At1g52340	chr1:019491478	0.0	C/19491478-19491527,19489997-19490804	AT1G52340.1  CDS  gene_syn ABA DEFICIENT 2, ABA2, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ATABA2, ATSDR1, F19K6.3, F19K6_3, GIN1, GLUCOSE INSENSITIVE 1, IMPAIRED SUCROSE INDUCTION 4, ISI4, SALT RESISTANT 1, SDR1, SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, SIS4, SRE1, SUGAR-INSENSITIVE 4  gene ABA2  function Encodes a cytosolic short-chain dehydrogenase/reductase involved in the conversion of xanthoxin to ABA-aldehyde during ABA biosynthesis. Mutants are insensitive to sucrose and glucose.  go_component cytosol|GO:0005829|12417697|IDA  go_process proline biosynthetic process|GO:0006561|9787459|IMP  go_process response to heat|GO:0009408|15923322|IMP  go_process response to water deprivation|GO:0009414|16682349|IMP  go_process response to water deprivation|GO:0009414|9787459|IMP  go_process abscisic acid biosynthetic process|GO:0009688|9159947|IMP  go_process regulation of abscisic acid biosynthetic process|GO:0010115|17010113|IMP  go_process sugar mediated signaling|GO:0010182|12663220|TAS  go_function alcohol dehydrogenase activity|GO:0004022|12417697|IDA  go_function xanthoxin dehydrogenase activity|GO:0010301|12172025|IDA  go_function oxidoreductase activity|GO:0016491||ISS  product ABA2 (ABA DEFICIENT 2); alcohol dehydrogenase/ oxidoreductase/ xanthoxin dehydrogenase  note ABA DEFICIENT 2 (ABA2); FUNCTIONS IN: alcohol dehydrogenase activity, oxidoreductase activity, xanthoxin dehydrogenase activity; INVOLVED IN: in 6 processes; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT3G51680.1); Has 81137 Blast hits to 80981 proteins in 2193 species: Archae - 468; Bacteria - 44222; Metazoa - 5093; Fungi - 4007; Plants - 1589; Viruses - 5; Other Eukaryotes - 25753 (source: NCBI BLink).  protein_id AT1G52340.1p  transcript_id AT1G52340.1  protein_id AT1G52340.1p  transcript_id AT1G52340.1  
At1g52342	chr1:019492440	0.0	C/19492440-19492703	AT1G52342.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 21 Blast hits to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G52342.1p  transcript_id AT1G52342.1  protein_id AT1G52342.1p  transcript_id AT1G52342.1  
At1g52343	chr1:019494226	0.0	C/19494226-19494441	AT1G52343.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G52343.1p  transcript_id AT1G52343.1  protein_id AT1G52343.1p  transcript_id AT1G52343.1  
At1g52343	chr1:019495493	0.0	C/19495493-19495718,19494226-19494455	AT1G52343.2  CDS  product unknown protein  note unknown protein.  protein_id AT1G52343.2p  transcript_id AT1G52343.2  protein_id AT1G52343.2p  transcript_id AT1G52343.2  
At1g52347	chr1:019496506	0.0	W/19496506-19497703	AT1G52347.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G52347.1  
At1g52350	chr1:019498419	0.0	C/19498419-19498492	AT1G52350.1  tRNA  gene_syn 60094.TRNA-ARG-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: TCG)  transcript_id AT1G52350.1  
At1g52360	chr1:019499282	0.0	W/19499282-19499284,19499681-19499701,19499810-19499871,19499960-19500014,19500220-19500256,19500375-19500700,19500789-19500920,19501014-19501162,19501343-19501411,19501652-19501802,19501899-19501964,19502167-19502355,19502490-19502630,19502780-19502854,19502950-19503126,19503212-19503303,19503386-19503502,19503743-19503857,19503944-19504015,19504231-19504427,19504512-19504605,19504691-19504797,19504962-19505091,19505194-19505397	AT1G52360.1  CDS  gene_syn F19K6.16, F19K6_16  go_component membrane coat|GO:0030117||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function structural molecule activity|GO:0005198||IEA  go_function protein binding|GO:0005515||IEA  go_component COPI vesicle coat|GO:0030126||ISS  product coatomer protein complex, subunit beta 2 (beta prime), putative  note coatomer protein complex, subunit beta 2 (beta prime), putative; FUNCTIONS IN: protein binding, structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Coatomer, WD associated region (InterPro:IPR006692), Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), WD40 repeat (InterPro:IPR001680), WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), Coatomer, beta&apos; subunit (InterPro:IPR016453), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: coatomer protein complex, subunit beta 2 (beta prime), putative (TAIR:AT3G15980.3); Has 57972 Blast hits to 24958 proteins in 644 species: Archae - 48; Bacteria - 5666; Metazoa - 27314; Fungi - 11164; Plants - 5401; Viruses - 42; Other Eukaryotes - 8337 (source: NCBI BLink).  protein_id AT1G52360.1p  transcript_id AT1G52360.1  protein_id AT1G52360.1p  transcript_id AT1G52360.1  
At1g52370	chr1:019507052	0.0	W/19507052-19507175,19507382-19507449,19507724-19507876,19507983-19508093,19508221-19508287,19508413-19508699	AT1G52370.1  CDS  gene_syn F19K6.5, F19K6_5  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_component large ribosomal subunit|GO:0015934||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L22 family  protein  note ribosomal protein L22 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; CONTAINS InterPro DOMAIN/s: Ribosomal protein L22/L17 (InterPro:IPR001063), Ribosomal protein L22, bacterial-type (InterPro:IPR005727); BEST Arabidopsis thaliana protein match is: ribosomal protein L22 family protein (TAIR:AT4G28360.1); Has 5508 Blast hits to 5508 proteins in 1685 species: Archae - 0; Bacteria - 3080; Metazoa - 109; Fungi - 47; Plants - 427; Viruses - 0; Other Eukaryotes - 1845 (source: NCBI BLink).  protein_id AT1G52370.1p  transcript_id AT1G52370.1  protein_id AT1G52370.1p  transcript_id AT1G52370.1  
At1g52370	chr1:019507052	0.0	W/19507052-19507175,19507382-19507449,19507724-19507876,19507983-19508093,19508221-19508287,19508413-19508699	AT1G52370.2  CDS  gene_syn F19K6.5, F19K6_5  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_component large ribosomal subunit|GO:0015934||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L22 family  protein  note ribosomal protein L22 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; CONTAINS InterPro DOMAIN/s: Ribosomal protein L22/L17 (InterPro:IPR001063), Ribosomal protein L22, bacterial-type (InterPro:IPR005727); BEST Arabidopsis thaliana protein match is: ribosomal protein L22 family protein (TAIR:AT4G28360.1); Has 5508 Blast hits to 5508 proteins in 1685 species: Archae - 0; Bacteria - 3080; Metazoa - 109; Fungi - 47; Plants - 427; Viruses - 0; Other Eukaryotes - 1845 (source: NCBI BLink).  protein_id AT1G52370.2p  transcript_id AT1G52370.2  protein_id AT1G52370.2p  transcript_id AT1G52370.2  
At1g52370	chr1:019507052	0.0	W/19507052-19507175,19507382-19507449,19507724-19507876,19507983-19508093,19508221-19508287,19508413-19508699	AT1G52370.3  CDS  gene_syn F19K6.5, F19K6_5  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_component large ribosomal subunit|GO:0015934||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L22 family  protein  note ribosomal protein L22 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; CONTAINS InterPro DOMAIN/s: Ribosomal protein L22/L17 (InterPro:IPR001063), Ribosomal protein L22, bacterial-type (InterPro:IPR005727); BEST Arabidopsis thaliana protein match is: ribosomal protein L22 family protein (TAIR:AT4G28360.1); Has 5508 Blast hits to 5508 proteins in 1685 species: Archae - 0; Bacteria - 3080; Metazoa - 109; Fungi - 47; Plants - 427; Viruses - 0; Other Eukaryotes - 1845 (source: NCBI BLink).  protein_id AT1G52370.3p  transcript_id AT1G52370.3  protein_id AT1G52370.3p  transcript_id AT1G52370.3  
At1g52380	chr1:019509979	0.0	W/19509979-19511301	AT1G52380.1  CDS  gene_syn F19K6.4, F19K6_4  go_process intracellular transport|GO:0046907||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_function molecular_function|GO:0003674||ND  product Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein  note Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular transport; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ran Binding Protein 1 (InterPro:IPR000156), Pleckstrin homology-type (InterPro:IPR011993), NUP50 (Nucleoporin 50 kDa) (InterPro:IPR015007); BEST Arabidopsis thaliana protein match is: Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein (TAIR:AT3G15970.1); Has 1224 Blast hits to 974 proteins in 166 species: Archae - 0; Bacteria - 22; Metazoa - 715; Fungi - 281; Plants - 101; Viruses - 2; Other Eukaryotes - 103 (source: NCBI BLink).  protein_id AT1G52380.1p  transcript_id AT1G52380.1  protein_id AT1G52380.1p  transcript_id AT1G52380.1  
At1g52390	chr1:019512049	0.0	C/19512049-19512234,19511968-19511997	AT1G52390.1  CDS  gene_syn F19K6.2, F19K6_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G52390.1p  transcript_id AT1G52390.1  protein_id AT1G52390.1p  transcript_id AT1G52390.1  
At1g52400	chr1:019515250	0.0	W/19515250-19515423,19515526-19515595,19515677-19515732,19515829-19515904,19516055-19516132,19516225-19516577,19516661-19516770,19516854-19517068,19517169-19517203,19517334-19517436,19517531-19517642,19517726-19517930	AT1G52400.1  CDS  gene_syn BETA GLUCOSIDASE 18, BETA-GLUCOSIDASE HOMOLOG 1, BGL1, BGLU18, F19K6.15, F19K6_15  gene BGLU18  function encodes a member of glycosyl hydrolase family 1, located in inducible ER bodies which were formed after wounding, required in inducible ER body formation  go_component nucleus|GO:0005634|14617066|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component ER body|GO:0010168|19147648|IDA  go_process response to wounding|GO:0009611|19147648|IEP  go_process response to salt stress|GO:0009651|11351099|IEP  go_process ER body organization|GO:0080119|19147648|IMP  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU18 (BETA GLUCOSIDASE 18); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 18 (BGLU18); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: ER body organization, response to salt stress, response to wounding; LOCATED IN: chloroplast, peroxisome, nucleus, vacuole, ER body; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU19 (BETA GLUCOSIDASE 19); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT3G21370.1); Has 5750 Blast hits to 5510 proteins in 796 species: Archae - 100; Bacteria - 3123; Metazoa - 600; Fungi - 134; Plants - 853; Viruses - 0; Other Eukaryotes - 940 (source: NCBI BLink).  protein_id AT1G52400.1p  transcript_id AT1G52400.1  protein_id AT1G52400.1p  transcript_id AT1G52400.1  
At1g52400	chr1:019515250	0.0	W/19515250-19515423,19515526-19515595,19515677-19515732,19515829-19515904,19516055-19516132,19516225-19516577,19516661-19516770,19516854-19517068,19517169-19517203,19517334-19517436,19517531-19517646	AT1G52400.2  CDS  gene_syn BETA GLUCOSIDASE 18, BETA-GLUCOSIDASE HOMOLOG 1, BGL1, BGLU18, F19K6.15, F19K6_15  gene BGLU18  function encodes a member of glycosyl hydrolase family 1, located in inducible ER bodies which were formed after wounding, required in inducible ER body formation  go_component vacuole|GO:0005773|15539469|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component ER body|GO:0010168|19147648|IDA  go_process response to wounding|GO:0009611|19147648|IEP  go_process response to salt stress|GO:0009651|11351099|IEP  go_process ER body organization|GO:0080119|19147648|IMP  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU18 (BETA GLUCOSIDASE 18); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 18 (BGLU18); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: ER body organization, response to salt stress, response to wounding; LOCATED IN: chloroplast, peroxisome, vacuole, ER body; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU19 (BETA GLUCOSIDASE 19); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT3G21370.1); Has 5302 Blast hits to 5113 proteins in 788 species: Archae - 98; Bacteria - 3035; Metazoa - 572; Fungi - 132; Plants - 825; Viruses - 0; Other Eukaryotes - 640 (source: NCBI BLink).  protein_id AT1G52400.2p  transcript_id AT1G52400.2  protein_id AT1G52400.2p  transcript_id AT1G52400.2  
At1g52410	chr1:019520762	0.0	W/19520762-19520851,19520929-19520980,19521079-19521120,19521204-19521289,19521430-19521499,19521640-19521714,19521798-19521845,19521945-19522010,19522099-19522146,19522247-19522315,19522402-19522449,19522574-19522642,19522712-19522759,19522858-19522926,19523024-19523071,19523169-19523228,19523304-19523357,19523439-19523501,19523595-19523642,19523719-19523787,19523871-19523918,19524002-19524061,19524145-19524192,19524285-19524326,19524411-19524565,19524657-19525361	AT1G52410.2  CDS  gene_syn F19K6.14, F19K6_14, TSA1, TSK-ASSOCIATING PROTEIN 1  gene TSA1  function Contains a novel calcium-binding repeat sequence. Binds TSK in vitro. Localizes to small cytoplasmic vesicles in interphase cells. In cells synchronized for cell division, TSA1 and TSK relocalize to ends of spindle microtubules that are ahead of separating chromatids during metaphase and anaphase of mitosis. May be involved in mitosis together with TSK. Expressed preferentially in the flower and shoot apex. Can form multimers.  go_component vacuole|GO:0005773|15539469|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process response to salt stress|GO:0009651|11351099|IEP  go_function calcium ion binding|GO:0005509|15964904|IDA  go_function protein binding|GO:0005515|15964904|IPI  product TSA1 (TSK-ASSOCIATING PROTEIN 1); calcium ion binding / protein binding  note TSK-ASSOCIATING PROTEIN 1 (TSA1); FUNCTIONS IN: protein binding, calcium ion binding; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast thylakoid membrane, peroxisome, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: NAI2 (TAIR:AT3G15950.1); Has 48935 Blast hits to 30455 proteins in 1555 species: Archae - 513; Bacteria - 5552; Metazoa - 23031; Fungi - 4865; Plants - 1784; Viruses - 256; Other Eukaryotes - 12934 (source: NCBI BLink).  protein_id AT1G52410.2p  transcript_id AT1G52410.2  protein_id AT1G52410.2p  transcript_id AT1G52410.2  
At1g52410	chr1:019520762	0.0	W/19520762-19520851,19520929-19520980,19521079-19521120,19521204-19521289,19521430-19521499,19521640-19521714,19521798-19521845,19521945-19522010,19522099-19522146,19522247-19522315,19522402-19522449,19522574-19522642,19522712-19522759,19522870-19522926,19523024-19523071,19523169-19523228,19523304-19523357,19523439-19523501,19523595-19523642,19523719-19523787,19523871-19523918,19524002-19524061,19524145-19524192,19524285-19524326,19524411-19524565,19524657-19525361	AT1G52410.1  CDS  gene_syn F19K6.14, F19K6_14, TSA1, TSK-ASSOCIATING PROTEIN 1  gene TSA1  function Contains a novel calcium-binding repeat sequence. Binds TSK in vitro. Localizes to small cytoplasmic vesicles in interphase cells. In cells synchronized for cell division, TSA1 and TSK relocalize to ends of spindle microtubules that are ahead of separating chromatids during metaphase and anaphase of mitosis. May be involved in mitosis together with TSK. Expressed preferentially in the flower and shoot apex. Can form multimers.  go_component vacuole|GO:0005773|15539469|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process response to salt stress|GO:0009651|11351099|IEP  go_function calcium ion binding|GO:0005509|15964904|IDA  go_function protein binding|GO:0005515|15964904|IPI  product TSA1 (TSK-ASSOCIATING PROTEIN 1); calcium ion binding / protein binding  note TSK-ASSOCIATING PROTEIN 1 (TSA1); FUNCTIONS IN: protein binding, calcium ion binding; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast thylakoid membrane, peroxisome, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: NAI2 (TAIR:AT3G15950.1); Has 48822 Blast hits to 30405 proteins in 1544 species: Archae - 475; Bacteria - 5508; Metazoa - 23109; Fungi - 4746; Plants - 1790; Viruses - 304; Other Eukaryotes - 12890 (source: NCBI BLink).  protein_id AT1G52410.1p  transcript_id AT1G52410.1  protein_id AT1G52410.1p  transcript_id AT1G52410.1  
At1g52415	chr1:019526166	0.0	W/19526166-19526514,19526685-19526686	AT1G52415.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140); BEST Arabidopsis thaliana protein match is: Expressed protein (TAIR:AT4G28405.1); Has 14 Blast hits to 14 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G52415.1p  transcript_id AT1G52415.1  protein_id AT1G52415.1p  transcript_id AT1G52415.1  
At1g52420	chr1:019528667	0.0	W/19528667-19529618,19529709-19530469,19530736-19531035	AT1G52420.1  CDS  gene_syn F19K6.13  go_process biosynthetic process|GO:0009058||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyl transferase family 1 protein  note glycosyl transferase family 1 protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: glycosyl transferase family 1 protein (TAIR:AT3G15940.1); Has 4722 Blast hits to 4718 proteins in 799 species: Archae - 145; Bacteria - 2692; Metazoa - 11; Fungi - 32; Plants - 84; Viruses - 0; Other Eukaryotes - 1758 (source: NCBI BLink).  protein_id AT1G52420.1p  transcript_id AT1G52420.1  protein_id AT1G52420.1p  transcript_id AT1G52420.1  
At1g52430	chr1:019534021	0.0	C/19534021-19535955,19533808-19533936,19533606-19533719,19533387-19533436,19533170-19533312,19532976-19533079,19532668-19532850,19532350-19532556,19532115-19532262,19531886-19532016,19531713-19531802,19531539-19531619,19531350-19531445	AT1G52430.1  CDS  gene_syn F6D8.35, F6D8_35  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_component cellular_component|GO:0005575||ND  product ubiquitin carboxyl-terminal hydrolase-related  note ubiquitin carboxyl-terminal hydrolase-related; FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: ubiquitin carboxyl-terminal hydrolase-related (TAIR:AT1G52450.1); Has 135 Blast hits to 123 proteins in 20 species: Archae - 0; Bacteria - 9; Metazoa - 9; Fungi - 2; Plants - 102; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G52430.1p  transcript_id AT1G52430.1  protein_id AT1G52430.1p  transcript_id AT1G52430.1  
At1g52440	chr1:019538821	0.0	W/19538821-19538833,19539168-19539273,19539479-19539515,19539605-19539644,19539994-19540126,19540213-19540298,19540394-19540490,19540610-19540700	AT1G52440.1  CDS  gene_syn F6D8.34, F6D8_34  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: hydrolase (TAIR:AT1G52460.1); Has 66 Blast hits to 65 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G52440.1p  transcript_id AT1G52440.1  protein_id AT1G52440.1p  transcript_id AT1G52440.1  
At1g52450	chr1:019544332	0.0	C/19544332-19546266,19544119-19544247,19543941-19544054,19543721-19543770,19543504-19543646,19543310-19543413,19543002-19543184,19542684-19542890,19542449-19542596,19542220-19542350,19542047-19542136,19541873-19541953,19541684-19541779	AT1G52450.1  CDS  gene_syn F6D8.33, F6D8_33  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_component cellular_component|GO:0005575||ND  product ubiquitin carboxyl-terminal hydrolase-related  note ubiquitin carboxyl-terminal hydrolase-related; FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: ubiquitin carboxyl-terminal hydrolase-related (TAIR:AT1G52430.1); Has 145 Blast hits to 131 proteins in 21 species: Archae - 0; Bacteria - 11; Metazoa - 11; Fungi - 2; Plants - 102; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT1G52450.1p  transcript_id AT1G52450.1  protein_id AT1G52450.1p  transcript_id AT1G52450.1  
At1g52460	chr1:019549368	0.0	W/19549368-19549380,19549709-19549802,19550011-19550047,19550132-19550171,19550281-19550367,19550488-19550620,19550707-19550792,19550871-19550967,19551079-19551184	AT1G52460.1  CDS  gene_syn F6D8.32, F6D8_32  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product hydrolase  note hydrolase; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Phospholipase/carboxylesterase (InterPro:IPR003140); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52440.1); Has 107 Blast hits to 107 proteins in 26 species: Archae - 0; Bacteria - 2; Metazoa - 37; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G52460.1p  transcript_id AT1G52460.1  protein_id AT1G52460.1p  transcript_id AT1G52460.1  
At1g52470	chr1:019553347	0.0	W/19553347-19553359,19553771-19553885,19554105-19554141,19554213-19554252,19554353-19554451,19554687-19554819,19554909-19554991,19555071-19555164,19555264-19555357	AT1G52470.1  CDS  gene_syn F6D8.31, F6D8_31  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product hydrolase  note hydrolase; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Phospholipase/carboxylesterase (InterPro:IPR003140); BEST Arabidopsis thaliana protein match is: hydrolase (TAIR:AT1G52460.1); Has 74 Blast hits to 74 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G52470.1p  transcript_id AT1G52470.1  protein_id AT1G52470.1p  transcript_id AT1G52470.1  
At1g52470	chr1:019553347	0.0	W/19553347-19553359,19553771-19553885,19554105-19554141,19554213-19554252,19554353-19554451,19554687-19554819,19554909-19554991,19555073-19555098	AT1G52470.2  CDS  gene_syn F6D8.31, F6D8_31  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: hydrolase (TAIR:AT1G52460.1); Has 69 Blast hits to 69 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G52470.2p  transcript_id AT1G52470.2  protein_id AT1G52470.2p  transcript_id AT1G52470.2  
At1g52470	chr1:019553347	0.0	W/19553347-19553359,19553771-19553885,19554105-19554141,19554213-19554252,19554353-19554451,19554687-19554819,19554909-19555014	AT1G52470.3  CDS  gene_syn F6D8.31, F6D8_31  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: hydrolase (TAIR:AT1G52460.1); Has 69 Blast hits to 69 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G52470.3p  transcript_id AT1G52470.3  protein_id AT1G52470.3p  transcript_id AT1G52470.3  
At1g52490	chr1:019558204	0.0	C/19558204-19559011,19557216-19557297,19556649-19556961,19556218-19556556	AT1G52490.1  CDS  gene_syn F6D8.29, F6D8_29  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G32420.1); Has 1001 Blast hits to 983 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1001; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G52490.1p  transcript_id AT1G52490.1  protein_id AT1G52490.1p  transcript_id AT1G52490.1  
At1g52500	chr1:019560043	0.0	W/19560043-19560271,19560692-19560743,19560835-19560892,19560978-19561046,19561140-19561265,19561477-19561527,19561687-19561764,19561894-19562055	AT1G52500.1  CDS  gene_syn A. THALIANA FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE 1, ARABIDOPSIS THALIANA MUTM HOMOLOG-1, ATFPG-1, ATFPG-2, ATMMH-1, ATMMH-2, F6D8.37, F6D8_37, FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE 1, FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE 2, FPG-1, FPG-2, MMH-2  gene ATMMH-1  function Encodes one of the splice variants of Arabidopsis thaliana MutM homolog. Encodes a formamidopyrimidine-DNA glycosylase that has abasic lyase activity and is able to nick double- stranded oligonucleotides containing 8-oxo-7,8-dihydroguanine (8-oxoG) in vitro.  go_component cellular_component|GO:0005575||ND  go_process DNA repair|GO:0006281|11272725|IDA  go_process DNA repair|GO:0006281|9819050|IDA  go_process response to oxidative stress|GO:0006979|9819050|TAS  go_function DNA N-glycosylase activity|GO:0019104|11272725|IDA  go_function DNA N-glycosylase activity|GO:0019104|9819050|IDA  go_function DNA N-glycosylase activity|GO:0019104|9819050|ISS  product ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1); DNA N-glycosylase  note MMH-2; FUNCTIONS IN: DNA N-glycosylase activity; INVOLVED IN: response to oxidative stress, DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13-like, H2TH (InterPro:IPR010979), DNA glycosylase/AP lyase, H2TH DNA-binding (InterPro:IPR015886), DNA glycosylase/AP lyase, catalytic domain (InterPro:IPR012319), DNA glycosylase/AP lyase (InterPro:IPR000191); Has 5191 Blast hits to 5189 proteins in 1180 species: Archae - 3; Bacteria - 2712; Metazoa - 94; Fungi - 64; Plants - 43; Viruses - 3; Other Eukaryotes - 2272 (source: NCBI BLink).  protein_id AT1G52500.1p  transcript_id AT1G52500.1  protein_id AT1G52500.1p  transcript_id AT1G52500.1  
At1g52500	chr1:019560043	0.0	W/19560043-19560271,19560692-19560743,19560835-19560892,19560978-19561046,19561140-19561265,19561477-19561527,19561687-19561764,19562052-19562154,19562347-19562381,19562484-19562855	AT1G52500.2  CDS  gene_syn A. THALIANA FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE 1, ARABIDOPSIS THALIANA MUTM HOMOLOG-1, ATFPG-1, ATFPG-2, ATMMH-1, ATMMH-2, F6D8.37, F6D8_37, FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE 1, FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE 2, FPG-1, FPG-2, MMH-2  gene ATMMH-1  function Encodes one of the splice variants of Arabidopsis thaliana MutM homolog. Encodes a formamidopyrimidine-DNA glycosylase that has abasic lyase activity and is able to nick double- stranded oligonucleotides containing 8-oxo-7,8-dihydroguanine (8-oxoG) in vitro.  go_component cellular_component|GO:0005575||ND  go_process DNA repair|GO:0006281|11272725|IDA  go_process DNA repair|GO:0006281|9819050|IDA  go_process response to oxidative stress|GO:0006979|9819050|TAS  go_function DNA N-glycosylase activity|GO:0019104|11272725|IDA  go_function DNA N-glycosylase activity|GO:0019104|9819050|IDA  go_function DNA N-glycosylase activity|GO:0019104|9819050|ISS  product ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1); DNA N-glycosylase  note ARABIDOPSIS THALIANA MUTM HOMOLOG-1 (ATMMH-1); FUNCTIONS IN: DNA N-glycosylase activity; INVOLVED IN: response to oxidative stress, DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13-like, H2TH (InterPro:IPR010979), DNA glycosylase/AP lyase, H2TH DNA-binding (InterPro:IPR015886), DNA glycosylase/AP lyase, catalytic domain (InterPro:IPR012319), DNA glycosylase/AP lyase (InterPro:IPR000191); Has 8852 Blast hits to 7793 proteins in 1321 species: Archae - 7; Bacteria - 2801; Metazoa - 1999; Fungi - 531; Plants - 259; Viruses - 37; Other Eukaryotes - 3218 (source: NCBI BLink).  protein_id AT1G52500.2p  transcript_id AT1G52500.2  protein_id AT1G52500.2p  transcript_id AT1G52500.2  
At1g52510	chr1:019564920	0.0	C/19564920-19564922,19564761-19564836,19564591-19564676,19564358-19564451,19564195-19564271,19563968-19564095,19563791-19563862,19563571-19563641,19563378-19563453,19563154-19563297,19563039-19563078	AT1G52510.2  CDS  gene_syn F6D8.27, F6D8_27  go_component chloroplast|GO:0009507|18431481|IDA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT4G12830.1); Has 3436 Blast hits to 3436 proteins in 613 species: Archae - 16; Bacteria - 2126; Metazoa - 94; Fungi - 67; Plants - 194; Viruses - 0; Other Eukaryotes - 939 (source: NCBI BLink).  protein_id AT1G52510.2p  transcript_id AT1G52510.2  protein_id AT1G52510.2p  transcript_id AT1G52510.2  
At1g52510	chr1:019564982	0.0	C/19564982-19565260,19564761-19564836,19564591-19564676,19564358-19564451,19564195-19564271,19563968-19564095,19563791-19563862,19563571-19563641,19563378-19563453,19563154-19563297,19563039-19563078	AT1G52510.1  CDS  gene_syn F6D8.27, F6D8_27  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT4G12830.1); Has 3440 Blast hits to 3440 proteins in 614 species: Archae - 16; Bacteria - 2126; Metazoa - 96; Fungi - 67; Plants - 194; Viruses - 0; Other Eukaryotes - 941 (source: NCBI BLink).  protein_id AT1G52510.1p  transcript_id AT1G52510.1  protein_id AT1G52510.1p  transcript_id AT1G52510.1  
At1g52520	chr1:019565933	0.0	W/19565933-19565962,19566167-19568248	AT1G52520.1  CDS  gene_syn F6D8.26, F6D8_26, FAR1-related sequence 6, FRS6  gene FRS6  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process response to red or far red light|GO:0009639||ISS  product FRS6 (FAR1-related sequence 6); zinc ion binding  note FAR1-related sequence 6 (FRS6); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FRS8 (FAR1-related sequence 8); zinc ion binding (TAIR:AT1G80010.1); Has 945 Blast hits to 866 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 78; Plants - 855; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G52520.1p  transcript_id AT1G52520.1  protein_id AT1G52520.1p  transcript_id AT1G52520.1  
At1g52530	chr1:019569045	0.0	W/19569045-19570004	AT1G52530.1  CDS  gene_syn F6D8.25, F6D8_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Hus1-like protein (InterPro:IPR007150); Has 88 Blast hits to 87 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 51; Fungi - 6; Plants - 21; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G52530.1p  transcript_id AT1G52530.1  protein_id AT1G52530.1p  transcript_id AT1G52530.1  
At1g52540	chr1:019571841	0.0	C/19571841-19571884,19571389-19571536,19570980-19571242,19570298-19570895	AT1G52540.1  CDS  gene_syn F6D8.24, F6D8_24  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase, active site (InterPro:IPR008266), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G15890.1); Has 70499 Blast hits to 69642 proteins in 2599 species: Archae - 23; Bacteria - 5988; Metazoa - 31618; Fungi - 4656; Plants - 16779; Viruses - 276; Other Eukaryotes - 11159 (source: NCBI BLink).  protein_id AT1G52540.1p  transcript_id AT1G52540.1  protein_id AT1G52540.1p  transcript_id AT1G52540.1  
At1g52550	chr1:019573756	0.0	C/19573756-19573999,19573185-19573336	AT1G52550.1  CDS  gene_syn F6D8.23, F6D8_23  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15780.1); Has 45 Blast hits to 43 proteins in 14 species: Archae - 0; Bacteria - 6; Metazoa - 3; Fungi - 0; Plants - 18; Viruses - 8; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G52550.1p  transcript_id AT1G52550.1  protein_id AT1G52550.1p  transcript_id AT1G52550.1  
At1g52560	chr1:019575487	0.0	C/19575487-19575766,19574783-19575180	AT1G52560.2  CDS  gene_syn F6D8.22, F6D8_22  go_component mitochondrion|GO:0005739||IEA  go_process response to heat|GO:0009408|17059409|IEP  go_process response to heat|GO:0009408||ISS  go_process response to high light intensity|GO:0009644|17059409|IEP  go_process response to hydrogen peroxide|GO:0042542|17059409|IEP  go_function molecular_function|GO:0003674||ND  product 26.5 kDa class I small heat shock protein-like (HSP26.5-P)  note 26.5 kDa class I small heat shock protein-like (HSP26.5-P); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat; LOCATED IN: mitochondrion; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP21 (HEAT SHOCK PROTEIN 21) (TAIR:AT4G27670.1); Has 371 Blast hits to 371 proteins in 132 species: Archae - 7; Bacteria - 255; Metazoa - 0; Fungi - 11; Plants - 76; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT1G52560.2p  transcript_id AT1G52560.2  protein_id AT1G52560.2p  transcript_id AT1G52560.2  
At1g52560	chr1:019575487	0.0	C/19575487-19575766,19574783-19575201	AT1G52560.1  CDS  gene_syn F6D8.22, F6D8_22  go_component mitochondrion|GO:0005739||IEA  go_process response to heat|GO:0009408|17059409|IEP  go_process response to heat|GO:0009408||ISS  go_process response to high light intensity|GO:0009644|17059409|IEP  go_process response to hydrogen peroxide|GO:0042542|17059409|IEP  go_function molecular_function|GO:0003674||ND  product 26.5 kDa class I small heat shock protein-like (HSP26.5-P)  note 26.5 kDa class I small heat shock protein-like (HSP26.5-P); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat; LOCATED IN: mitochondrion; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP21 (HEAT SHOCK PROTEIN 21) (TAIR:AT4G27670.1); Has 3924 Blast hits to 3924 proteins in 880 species: Archae - 98; Bacteria - 2026; Metazoa - 10; Fungi - 148; Plants - 869; Viruses - 2; Other Eukaryotes - 771 (source: NCBI BLink).  protein_id AT1G52560.1p  transcript_id AT1G52560.1  protein_id AT1G52560.1p  transcript_id AT1G52560.1  
At1g52565	chr1:019580364	0.0	C/19580364-19580511,19580061-19580302	AT1G52565.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15760.1); Has 21 Blast hits to 21 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G52565.1p  transcript_id AT1G52565.1  protein_id AT1G52565.1p  transcript_id AT1G52565.1  
At1g52570	chr1:019586456	0.0	C/19586456-19586551,19584451-19586353,19583940-19584373	AT1G52570.1  CDS  gene_syn F6D8.21, F6D8_21, PHOSPHOLIPASE D, PLDALPHA2, phosphlipase d alpha 2  gene PLDALPHA2  function member of C2-PLD subfamily  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process metabolic process|GO:0008152||IEA  go_process phosphatidylcholine metabolic process|GO:0046470||IEA  go_function phospholipase D activity|GO:0004630||ISS  product PLDALPHA2 (phosphlipase d alpha 2); phospholipase D  note phosphlipase d alpha 2 (PLDALPHA2); FUNCTIONS IN: phospholipase D activity; INVOLVED IN: phosphatidylcholine metabolic process, metabolic process; LOCATED IN: chloroplast envelope; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phospholipase D (InterPro:IPR015679), Phospholipase D, plant (InterPro:IPR011402), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1); phospholipase D (TAIR:AT3G15730.1); Has 1352 Blast hits to 1012 proteins in 287 species: Archae - 0; Bacteria - 389; Metazoa - 276; Fungi - 285; Plants - 322; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT1G52570.1p  transcript_id AT1G52570.1  protein_id AT1G52570.1p  transcript_id AT1G52570.1  
At1g52580	chr1:019587637	0.0	W/19587637-19587902,19588014-19588174,19588250-19588419,19588484-19588743,19588886-19588958	AT1G52580.1  CDS  gene_syn ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5, ATRBL5, F6D8.20, F6D8_20  gene ATRBL5  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ATRBL5 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5)  note ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5 (ATRBL5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: ATRBL1 (Arabidopsis thaliana Rhomboid-like 1) (TAIR:AT2G29050.1); Has 3872 Blast hits to 3872 proteins in 951 species: Archae - 83; Bacteria - 1981; Metazoa - 467; Fungi - 111; Plants - 189; Viruses - 0; Other Eukaryotes - 1041 (source: NCBI BLink).  protein_id AT1G52580.1p  transcript_id AT1G52580.1  protein_id AT1G52580.1p  transcript_id AT1G52580.1  
At1g52590	chr1:019590054	0.0	C/19590054-19590231,19589777-19589834,19589575-19589682,19589394-19589486,19589224-19589305	AT1G52590.1  CDS  gene_syn F6D8.19, F6D8_19  go_component plastoglobule|GO:0010287|16414959|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Putative thiol-disulphide oxidoreductase DCC (InterPro:IPR007263); BEST Arabidopsis thaliana protein match is: RNase H domain-containing protein (TAIR:AT1G24090.1); Has 622 Blast hits to 622 proteins in 201 species: Archae - 0; Bacteria - 363; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).  protein_id AT1G52590.1p  transcript_id AT1G52590.1  protein_id AT1G52590.1p  transcript_id AT1G52590.1  
At1g52600	chr1:019590612	0.0	W/19590612-19590690,19591415-19591527,19591676-19591747,19591842-19591877,19591979-19592024,19592092-19592179,19592282-19592339,19592436-19592486	AT1G52600.1  CDS  gene_syn F6D8.18, F6D8_18  go_component plasma membrane|GO:0005886|17644812|IDA  go_process signal peptide processing|GO:0006465||IEA  go_process proteolysis|GO:0006508||IEA  go_function peptidase activity|GO:0008233||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component membrane|GO:0016020||ISS  go_process proteolysis|GO:0006508||ISS  go_function peptidase activity|GO:0008233||ISS  product signal peptidase, putative  note signal peptidase, putative; FUNCTIONS IN: peptidase activity; INVOLVED IN: proteolysis, signal peptide processing; LOCATED IN: endoplasmic reticulum, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S24, S26A and S26B, C-terminal (InterPro:IPR011056), Peptidase S26B, eukaryotic signal peptidase (InterPro:IPR001733), Peptidase S24, S26A, S26B and S26C (InterPro:IPR015927); BEST Arabidopsis thaliana protein match is: signal peptidase, putative (TAIR:AT3G15710.1); Has 592 Blast hits to 592 proteins in 237 species: Archae - 51; Bacteria - 117; Metazoa - 192; Fungi - 97; Plants - 49; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT1G52600.1p  transcript_id AT1G52600.1  protein_id AT1G52600.1p  transcript_id AT1G52600.1  
At1g52610	chr1:019596595	0.0	C/19596595-19599402	AT1G52610.1  mRNA_TE_gene  pseudo  gene_syn F6D8.17, F6D8_17  note Transposable element gene, Mutator-like transposase family, has a 2.0e-18 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At1g52615	chr1:019600531	0.0	C/19600531-19602345	AT1G52615.1  ncRNA  function unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G52615.1  
At1g52618	chr1:019603247	0.0	W/19603247-19603504	AT1G52618.1  CDS  product unknown protein  note unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G52618.1p  transcript_id AT1G52618.1  protein_id AT1G52618.1p  transcript_id AT1G52618.1  
At1g52620	chr1:019603828	0.0	W/19603828-19606287	AT1G52620.1  CDS  gene_syn F6D8.16, F6D8_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G74580.1); Has 24200 Blast hits to 5827 proteins in 183 species: Archae - 5; Bacteria - 14; Metazoa - 785; Fungi - 620; Plants - 21727; Viruses - 0; Other Eukaryotes - 1049 (source: NCBI BLink).  protein_id AT1G52620.1p  transcript_id AT1G52620.1  protein_id AT1G52620.1p  transcript_id AT1G52620.1  
At1g52630	chr1:019607837	0.0	C/19607837-19607848,19607625-19607713,19607302-19607523,19606470-19607202	AT1G52630.2  CDS  gene_syn F6D8.15, F6D8_15  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35570.1); Has 430 Blast hits to 425 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 430; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G52630.2p  transcript_id AT1G52630.2  protein_id AT1G52630.2p  transcript_id AT1G52630.2  
At1g52630	chr1:019608402	0.0	C/19608402-19608526,19608199-19608278,19607837-19607907,19607625-19607713,19607302-19607523,19606470-19607202	AT1G52630.1  CDS  gene_syn F6D8.15, F6D8_15  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02250.1); Has 430 Blast hits to 425 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 430; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G52630.1p  transcript_id AT1G52630.1  protein_id AT1G52630.1p  transcript_id AT1G52630.1  
At1g52640	chr1:019608857	0.0	C/19608857-19610428	AT1G52640.1  CDS  gene_syn F6D8.14, F6D8_14  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G77360.1); Has 17184 Blast hits to 5433 proteins in 172 species: Archae - 2; Bacteria - 10; Metazoa - 396; Fungi - 338; Plants - 15840; Viruses - 0; Other Eukaryotes - 598 (source: NCBI BLink).  protein_id AT1G52640.1p  transcript_id AT1G52640.1  protein_id AT1G52640.1p  transcript_id AT1G52640.1  
At1g52650	chr1:019610643	0.0	W/19610643-19610763,19610851-19611770,19611843-19611983,19612076-19612417	AT1G52650.1  CDS  gene_syn F6D8.13, F6D8_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G13960.1); Has 1151 Blast hits to 1117 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1150; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G52650.1p  transcript_id AT1G52650.1  protein_id AT1G52650.1p  transcript_id AT1G52650.1  
At1g52660	chr1:019613475	0.0	W/19613475-19614249,19614334-19614672,19614771-19614796	AT1G52660.1  CDS  gene_syn F6D8.12, F6D8_12  go_process apoptosis|GO:0006915||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product ATP binding  note ATP binding; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182); BEST Arabidopsis thaliana protein match is: disease resistance protein, putative (TAIR:AT3G15700.1); Has 5639 Blast hits to 5595 proteins in 217 species: Archae - 3; Bacteria - 32; Metazoa - 2; Fungi - 0; Plants - 5598; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G52660.1p  transcript_id AT1G52660.1  protein_id AT1G52660.1p  transcript_id AT1G52660.1  
At1g52670	chr1:019617411	0.0	C/19617411-19617420,19616915-19617106,19616694-19616770,19616375-19616434,19615739-19615975,19615589-19615651,19615415-19615483,19615293-19615338,19615119-19615189	AT1G52670.1  CDS  gene_syn F6D8.11, F6D8_11  go_component chloroplast|GO:0009507|18431481|IDA  go_function binding|GO:0005488||ISS  product biotin/lipoyl attachment domain-containing protein  note biotin/lipoyl attachment domain-containing protein; FUNCTIONS IN: binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: biotin carboxyl carrier protein of acetyl-CoA carboxylase-related (TAIR:AT3G15690.2); Has 1945 Blast hits to 1945 proteins in 695 species: Archae - 0; Bacteria - 1300; Metazoa - 2; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 568 (source: NCBI BLink).  protein_id AT1G52670.1p  transcript_id AT1G52670.1  protein_id AT1G52670.1p  transcript_id AT1G52670.1  
At1g52680	chr1:019618905	0.0	C/19618905-19618961,19618642-19618788,19618419-19618559	AT1G52680.1  CDS  gene_syn F6D8.10, F6D8_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product late embryogenesis abundant protein-related / LEA protein-related  note late embryogenesis abundant protein-related / LEA protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; Has 48 Blast hits to 48 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G52680.1p  transcript_id AT1G52680.1  protein_id AT1G52680.1p  transcript_id AT1G52680.1  
At1g52690	chr1:019619842	0.0	W/19619842-19619898,19620137-19620589	AT1G52690.1  CDS  gene_syn F6D8.9, F6D8_9  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||ISS  go_function molecular_function|GO:0003674||ND  product late embryogenesis abundant protein, putative / LEA protein, putative  note late embryogenesis abundant protein, putative / LEA protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: dry seed stage, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: late embryogenesis abundant protein, putative / LEA protein, putative (TAIR:AT3G15670.1); Has 2025 Blast hits to 947 proteins in 265 species: Archae - 6; Bacteria - 474; Metazoa - 312; Fungi - 113; Plants - 812; Viruses - 15; Other Eukaryotes - 293 (source: NCBI BLink).  protein_id AT1G52690.1p  transcript_id AT1G52690.1  protein_id AT1G52690.1p  transcript_id AT1G52690.1  
At1g52690	chr1:019619842	0.0	W/19619842-19619898,19620137-19620589	AT1G52690.2  CDS  gene_syn F6D8.9, F6D8_9  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||ISS  go_function molecular_function|GO:0003674||ND  product late embryogenesis abundant protein, putative / LEA protein, putative  note late embryogenesis abundant protein, putative / LEA protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: dry seed stage, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: late embryogenesis abundant protein, putative / LEA protein, putative (TAIR:AT3G15670.1); Has 2025 Blast hits to 947 proteins in 265 species: Archae - 6; Bacteria - 474; Metazoa - 312; Fungi - 113; Plants - 812; Viruses - 15; Other Eukaryotes - 293 (source: NCBI BLink).  protein_id AT1G52690.2p  transcript_id AT1G52690.2  protein_id AT1G52690.2p  transcript_id AT1G52690.2  
At1g52695	chr1:019623379	0.0	C/19623379-19623388,19623141-19623252,19622661-19622697,19622488-19622557,19622254-19622358,19621980-19622112,19621798-19621883,19621559-19621649,19621411-19621462	AT1G52695.1  CDS  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function hydrolase activity, acting on ester bonds|GO:0016788||ISS  product phospholipase/carboxylesterase family protein  note phospholipase/carboxylesterase family protein; FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on ester bonds; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Phospholipase/carboxylesterase (InterPro:IPR003140); BEST Arabidopsis thaliana protein match is: phospholipase/carboxylesterase family protein (TAIR:AT1G52700.1); Has 874 Blast hits to 871 proteins in 293 species: Archae - 0; Bacteria - 329; Metazoa - 281; Fungi - 65; Plants - 99; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).  protein_id AT1G52695.1p  transcript_id AT1G52695.1  protein_id AT1G52695.1p  transcript_id AT1G52695.1  
At1g52696	chr1:019624922	0.0	C/19624922-19625777	AT1G52696.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G52695; phospholipase/carboxylesterase family protein  
At1g52700	chr1:019633336	0.0	C/19633336-19633366,19633017-19633128,19632387-19632423,19632218-19632287,19632017-19632121,19631761-19631911,19631566-19631648,19631366-19631459,19631186-19631270	AT1G52700.1  CDS  gene_syn F6D8.5, F6D8_5  go_function hydrolase activity|GO:0016787||IEA  go_process biological_process|GO:0008150||ND  go_function carboxylesterase activity|GO:0004091||ISS  product phospholipase/carboxylesterase family protein  note phospholipase/carboxylesterase family protein; FUNCTIONS IN: hydrolase activity, carboxylesterase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase/carboxylesterase (InterPro:IPR003140); BEST Arabidopsis thaliana protein match is: phospholipase/carboxylesterase family protein (TAIR:AT3G15650.1); Has 1674 Blast hits to 1667 proteins in 451 species: Archae - 2; Bacteria - 592; Metazoa - 299; Fungi - 165; Plants - 110; Viruses - 0; Other Eukaryotes - 506 (source: NCBI BLink).  protein_id AT1G52700.1p  transcript_id AT1G52700.1  protein_id AT1G52700.1p  transcript_id AT1G52700.1  
At1g52710	chr1:019640086	0.0	C/19640086-19640112,19639966-19640016,19639007-19639073,19638804-19638883,19638627-19638674	AT1G52710.1  CDS  gene_syn F6D8.4, F6D8_4  go_component mitochondrial envelope|GO:0005740||IEA  go_function cytochrome-c oxidase activity|GO:0004129||IEA  go_process biological_process|GO:0008150||ND  product cytochrome c oxidase-related  note cytochrome c oxidase-related; FUNCTIONS IN: cytochrome-c oxidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrial envelope; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase, subunit Vb (InterPro:IPR002124); BEST Arabidopsis thaliana protein match is: cytochrome c oxidase family protein (TAIR:AT3G15640.2); Has 219 Blast hits to 219 proteins in 64 species: Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 17; Plants - 49; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT1G52710.1p  transcript_id AT1G52710.1  protein_id AT1G52710.1p  transcript_id AT1G52710.1  
At1g52720	chr1:019641007	0.0	W/19641007-19641360	AT1G52720.1  CDS  gene_syn F6D8.3, F6D8_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15630.1); Has 35 Blast hits to 35 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G52720.1p  transcript_id AT1G52720.1  protein_id AT1G52720.1p  transcript_id AT1G52720.1  
At1g52730	chr1:019642866	0.0	W/19642866-19642983,19643165-19643300,19643406-19643487,19643852-19644027,19644138-19644275,19644371-19644510,19644737-19644978	AT1G52730.1  CDS  gene_syn F6D8.2, F6D8_2  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G15610.1); Has 30510 Blast hits to 16063 proteins in 586 species: Archae - 66; Bacteria - 5027; Metazoa - 12592; Fungi - 6395; Plants - 2393; Viruses - 0; Other Eukaryotes - 4037 (source: NCBI BLink).  protein_id AT1G52730.1p  transcript_id AT1G52730.1  protein_id AT1G52730.1p  transcript_id AT1G52730.1  
At1g52730	chr1:019642866	0.0	W/19642866-19642983,19643165-19643300,19643406-19643487,19643852-19644027,19644138-19644275,19644371-19644510,19644737-19644978	AT1G52730.2  CDS  gene_syn F6D8.2, F6D8_2  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G15610.1); Has 30510 Blast hits to 16063 proteins in 586 species: Archae - 66; Bacteria - 5027; Metazoa - 12592; Fungi - 6395; Plants - 2393; Viruses - 0; Other Eukaryotes - 4037 (source: NCBI BLink).  protein_id AT1G52730.2p  transcript_id AT1G52730.2  protein_id AT1G52730.2p  transcript_id AT1G52730.2  
At1g52740	chr1:019645409	0.0	W/19645409-19645516,19645925-19646221	AT1G52740.1  CDS  gene_syn F14G24.1, F14G24_1, HISTONE H2A PROTEIN 9, HTA9  gene HTA9  function Encodes HTA9, a histone H2A protein.  go_component vacuole|GO:0005773|15539469|IDA  go_function DNA binding|GO:0003677||IEA  go_process regulation of flower development|GO:0009909|17470967|IGI  go_process defense response to bacterium|GO:0042742|17988222|IGI  go_function DNA binding|GO:0003677||ISS  product HTA9 (HISTONE H2A PROTEIN 9); DNA binding  note HISTONE H2A PROTEIN 9 (HTA9); FUNCTIONS IN: DNA binding; INVOLVED IN: defense response to bacterium, regulation of flower development; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: HTA11; DNA binding (TAIR:AT3G54560.1); Has 3277 Blast hits to 3277 proteins in 302 species: Archae - 0; Bacteria - 0; Metazoa - 2218; Fungi - 235; Plants - 444; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink).  protein_id AT1G52740.1p  transcript_id AT1G52740.1  protein_id AT1G52740.1p  transcript_id AT1G52740.1  
At1g52750	chr1:019648938	0.0	C/19648938-19649208,19648571-19648857,19647794-19648486,19647566-19647694,19647290-19647493,19646992-19647192,19646785-19646901	AT1G52750.1  CDS  gene_syn F14G24.2, F14G24_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT1G15490.1); Has 3799 Blast hits to 3789 proteins in 656 species: Archae - 26; Bacteria - 2509; Metazoa - 235; Fungi - 80; Plants - 220; Viruses - 0; Other Eukaryotes - 729 (source: NCBI BLink).  protein_id AT1G52750.1p  transcript_id AT1G52750.1  protein_id AT1G52750.1p  transcript_id AT1G52750.1  
At1g52760	chr1:019651378	0.0	W/19651378-19651717,19651831-19652176,19652264-19652576	AT1G52760.1  CDS  gene_syn F14G24.3, F14G24_3  go_component cellular_component|GO:0005575||ND  go_function catalytic activity|GO:0003824||ISS  product esterase/lipase/thioesterase family protein  note esterase/lipase/thioesterase family protein; FUNCTIONS IN: catalytic activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT1G11090.1); Has 1390 Blast hits to 1388 proteins in 451 species: Archae - 17; Bacteria - 724; Metazoa - 96; Fungi - 65; Plants - 235; Viruses - 38; Other Eukaryotes - 215 (source: NCBI BLink).  protein_id AT1G52760.1p  transcript_id AT1G52760.1  protein_id AT1G52760.1p  transcript_id AT1G52760.1  
At1g52770	chr1:019656009	0.0	W/19656009-19656764,19656938-19657546	AT1G52770.1  CDS  gene_syn F14G24.4, F14G24_4  go_process response to light stimulus|GO:0009416||IEA  go_function signal transducer activity|GO:0004871||IEA  go_component cellular_component|GO:0005575||ND  go_process response to light stimulus|GO:0009416||ISS  go_function signal transducer activity|GO:0004871||ISS  product phototropic-responsive NPH3 family protein  note phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249); BEST Arabidopsis thaliana protein match is: phototropic-responsive NPH3 family protein (TAIR:AT3G15570.1); Has 418 Blast hits to 411 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 418; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G52770.1p  transcript_id AT1G52770.1  protein_id AT1G52770.1p  transcript_id AT1G52770.1  
At1g52780	chr1:019658846	0.0	W/19658846-19662025	AT1G52780.1  CDS  gene_syn F14G24.5, F14G24_5  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: cultured cell, callus, leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21700.1); Has 51 Blast hits to 48 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G52780.1p  transcript_id AT1G52780.1  protein_id AT1G52780.1p  transcript_id AT1G52780.1  
At1g52790	chr1:019662937	0.0	C/19662937-19663301,19662519-19662843,19662194-19662436	AT1G52790.1  CDS  gene_syn F14G24.6, F14G24_6  function encodes a putative oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to GS-AOP loci (GI:16118889, GI:16118887, GI:16118891, GI:16118893); contains PF03171 2OG-Fe(II) oxygenase superfamily domain  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT1G52800.1); Has 2543 Blast hits to 2495 proteins in 324 species: Archae - 0; Bacteria - 172; Metazoa - 17; Fungi - 151; Plants - 1861; Viruses - 0; Other Eukaryotes - 342 (source: NCBI BLink).  protein_id AT1G52790.1p  transcript_id AT1G52790.1  protein_id AT1G52790.1p  transcript_id AT1G52790.1  
At1g52800	chr1:019664044	0.0	W/19664044-19664423,19664624-19664945,19665120-19665362	AT1G52800.1  CDS  gene_syn F14G24.7, F14G24_7  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT1G52790.1); Has 4161 Blast hits to 4110 proteins in 515 species: Archae - 0; Bacteria - 425; Metazoa - 58; Fungi - 323; Plants - 2729; Viruses - 0; Other Eukaryotes - 626 (source: NCBI BLink).  protein_id AT1G52800.1p  transcript_id AT1G52800.1  protein_id AT1G52800.1p  transcript_id AT1G52800.1  
At1g52810	chr1:019667127	0.0	W/19667127-19667509,19667581-19667707,19667805-19667915,19667989-19668237	AT1G52810.1  CDS  gene_syn F14G24.8, F14G24_8  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function oxidoreductase activity|GO:0016491||ISS  product 2-oxoglutarate-dependent dioxygenase-related  note 2-oxoglutarate-dependent dioxygenase-related; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, 4 leaf senescence stage, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase, putative (TAIR:AT1G52820.1); Has 1640 Blast hits to 1598 proteins in 234 species: Archae - 0; Bacteria - 50; Metazoa - 1; Fungi - 42; Plants - 1484; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT1G52810.1p  transcript_id AT1G52810.1  protein_id AT1G52810.1p  transcript_id AT1G52810.1  
At1g52820	chr1:019669216	0.0	W/19669216-19669598,19669668-19669989,19670073-19670321	AT1G52820.1  CDS  gene_syn F14G24.9, F14G24_9  go_function oxidoreductase activity|GO:0016491||IEA  product 2-oxoglutarate-dependent dioxygenase, putative  note 2-oxoglutarate-dependent dioxygenase, putative; FUNCTIONS IN: oxidoreductase activity; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: AOP1; oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (TAIR:AT4G03070.1); Has 5379 Blast hits to 5328 proteins in 664 species: Archae - 0; Bacteria - 697; Metazoa - 72; Fungi - 503; Plants - 2953; Viruses - 0; Other Eukaryotes - 1154 (source: NCBI BLink).  protein_id AT1G52820.1p  transcript_id AT1G52820.1  protein_id AT1G52820.1p  transcript_id AT1G52820.1  
At1g52825	chr1:019670658	0.0	C/19670658-19670894	AT1G52825.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14615.1); Has 30 Blast hits to 28 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G52825.1p  transcript_id AT1G52825.1  protein_id AT1G52825.1p  transcript_id AT1G52825.1  
At1g52827	chr1:019671812	0.0	C/19671812-19671860,19671525-19671664	AT1G52827.1  CDS  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G52827.1p  transcript_id AT1G52827.1  protein_id AT1G52827.1p  transcript_id AT1G52827.1  
At1g52830	chr1:019673160	0.0	C/19673160-19673559,19672877-19672967,19672670-19672748	AT1G52830.1  CDS  gene_syn F14G24.10, F14G24_10, IAA6, INDOLE-3-ACETIC ACID 6, SHORT HYPOCOTYL 1, SHY1  gene IAA6  function An extragenic dominant suppressor of the hy2 mutant phenotype. Also exhibits aspects of constitutive photomorphogenetic phenotype in the absence of hy2. Mutants have dominant leaf curling phenotype shortened hypocotyls and reduced apical hook. Induced by indole-3-acetic acid.  go_component nucleus|GO:0005634|7658471|ISS  go_process de-etiolation|GO:0009704|8624510|IMP  go_process response to auxin stimulus|GO:0009733|7658471|IEP  go_process response to auxin stimulus|GO:0009733|7658471|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product IAA6 (INDOLE-3-ACETIC ACID 6); transcription factor  note INDOLE-3-ACETIC ACID 6 (IAA6); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to auxin stimulus, de-etiolation; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19); transcription factor (TAIR:AT3G15540.1); Has 1056 Blast hits to 1056 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1055; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G52830.1p  transcript_id AT1G52830.1  protein_id AT1G52830.1p  transcript_id AT1G52830.1  
At1g52840	chr1:019674540	0.0	W/19674540-19676111	AT1G52840.1  mRNA_TE_gene  pseudo  gene_syn F14G24.11, F14G24_11  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G13865.1)  
At1g52850	chr1:019677577	0.0	W/19677577-19679780	AT1G52850.1  mRNA_TE_gene  pseudo  gene_syn F14G24.12, F14G24_12  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 4.2e-106 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At1g52857	chr1:019681642	0.0	C/19681642-19681681,19681420-19681529	AT1G52857.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G52857.1p  transcript_id AT1G52857.1  protein_id AT1G52857.1p  transcript_id AT1G52857.1  
At1g52855	chr1:019683137	0.0	C/19683137-19683343	AT1G52855.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15534.1); Has 29 Blast hits to 29 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G52855.1p  transcript_id AT1G52855.1  protein_id AT1G52855.1p  transcript_id AT1G52855.1  
At1g52860	chr1:019685183	0.0	C/19685183-19685219	AT1G52860.1  tRNA  gene_syn 60023.TRNA-TYR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G52860.1  
At1g52870	chr1:019685856	0.0	W/19685856-19686317,19686688-19686828,19686914-19687201,19687277-19687392,19687510-19687597,19687673-19687678	AT1G52870.2  CDS  gene_syn F14G24.14, F14G24_14  go_component chloroplast|GO:0009507||IEA  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product peroxisomal membrane protein-related  note peroxisomal membrane protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mpv17/PMP22 (InterPro:IPR007248); BEST Arabidopsis thaliana protein match is: peroxisomal membrane protein-related (TAIR:AT4G03410.2); Has 941 Blast hits to 941 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 495; Fungi - 210; Plants - 171; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT1G52870.2p  transcript_id AT1G52870.2  protein_id AT1G52870.2p  transcript_id AT1G52870.2  
At1g52870	chr1:019685856	0.0	W/19685856-19686317,19686688-19686828,19686914-19687201,19687281-19687310	AT1G52870.1  CDS  gene_syn F14G24.14, F14G24_14  go_component chloroplast|GO:0009507||IEA  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product peroxisomal membrane protein-related  note peroxisomal membrane protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mpv17/PMP22 (InterPro:IPR007248); BEST Arabidopsis thaliana protein match is: peroxisomal membrane protein-related (TAIR:AT4G03410.2); Has 265 Blast hits to 265 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 144; Fungi - 18; Plants - 91; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G52870.1p  transcript_id AT1G52870.1  protein_id AT1G52870.1p  transcript_id AT1G52870.1  
At1g52880	chr1:019690241	0.0	C/19690241-19690430,19689839-19690143,19689285-19689752	AT1G52880.1  CDS  gene_syn ANAC018, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 18, ATNAM, F14G24.15, F14G24_15, NAC DOMAIN PROTEIN NAM, NAC-REGULATED SEED MORPHOLOGY 2, NAM, NARS2, NO APICAL MERISTEM  gene NAM  function Transcription factor with a NAC domain. Homologous to the petunia gene NAM which is required for the development of the shoot. Expressed in the embryo.  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12175016|IDA  product NAM (NO APICAL MERISTEM); transcription factor  note NO APICAL MERISTEM (NAM); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ATNAC2 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 2); transcription factor (TAIR:AT3G15510.1); Has 1643 Blast hits to 1640 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1638; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G52880.1p  transcript_id AT1G52880.1  protein_id AT1G52880.1p  transcript_id AT1G52880.1  
At1g52890	chr1:019698264	0.0	C/19698264-19698444,19697898-19698166,19697292-19697795	AT1G52890.1  CDS  gene_syn ANAC019, Arabidopsis NAC domain containing protein 19, F14G24.16, F14G24_16  gene ANAC019  function encodes a NAC transcription factor whose expression is induced by drought, high salt, and abscisic acid. This gene binds to ERD1 promoter in vitro.  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_process response to water deprivation|GO:0009414|15319476|IEP  go_process response to water deprivation|GO:0009414|15319476|IMP  go_process response to abscisic acid stimulus|GO:0009737|15319476|IEP  go_process hyperosmotic salinity response|GO:0042538|15319476|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|15319476|IDA  product ANAC019 (Arabidopsis NAC domain containing protein 19); transcription factor  note Arabidopsis NAC domain containing protein 19 (ANAC019); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, response to water deprivation, hyperosmotic salinity response, response to abscisic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC055 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 55); transcription factor (TAIR:AT3G15500.1); Has 1640 Blast hits to 1637 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1640; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G52890.1p  transcript_id AT1G52890.1  protein_id AT1G52890.1p  transcript_id AT1G52890.1  
At1g52900	chr1:019702402	0.0	C/19702402-19702916,19702211-19702295	AT1G52900.1  CDS  gene_syn F14G24.17, F14G24_17  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR class), putative  note disease resistance protein (TIR class), putative; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein-related (TAIR:AT1G61105.1); Has 775 Blast hits to 756 proteins in 52 species: Archae - 0; Bacteria - 27; Metazoa - 36; Fungi - 0; Plants - 711; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G52900.1p  transcript_id AT1G52900.1  protein_id AT1G52900.1p  transcript_id AT1G52900.1  
At1g52905	chr1:019706230	0.0	W/19706230-19706260,19706385-19706497	AT1G52905.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27565.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G52905.1p  transcript_id AT1G52905.1  protein_id AT1G52905.1p  transcript_id AT1G52905.1  
At1g52910	chr1:019708114	0.0	W/19708114-19708203,19708612-19708817,19708897-19709128	AT1G52910.1  CDS  gene_syn F14G24.18, F14G24_18  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15480.1); Has 160 Blast hits to 160 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G52910.1p  transcript_id AT1G52910.1  protein_id AT1G52910.1p  transcript_id AT1G52910.1  
At1g52920	chr1:019710878	0.0	C/19710878-19711048,19710566-19710744,19710383-19710494,19710173-19710289,19709776-19710090,19709360-19709698	AT1G52920.1  CDS  gene_syn F14G24.19, F14G24_19, G PROTEIN COUPLED RECEPTOR, G-PROTEIN COUPLED RECEPTOR 2, GCR2, GPCR  gene GPCR  function Encodes a plasma membrane localized ABA receptor, which interacts with the G& 945;& 946;& 947; complex. It has been postulated that the binding of ABA to GCR2 results in the release of the G protein and dissociation of the heterotrimeric complex into G& 945; and the G& 946;& 947; dimer to activate downstream ABA effectors and to trigger the ABA responses.  go_component plasma membrane|GO:0005886|17347412|IDA  go_component extrinsic to membrane|GO:0019898|17894782|ISS  go_process regulation of abscisic acid mediated signaling|GO:0009787|17347412|IMP  go_process maintenance of seed dormancy|GO:0010231|17347412|IMP  go_function catalytic activity|GO:0003824||ISS  go_function abscisic acid binding|GO:0010427|17347412|IDA  product GPCR (G PROTEIN COUPLED RECEPTOR); abscisic acid binding / catalytic  note G PROTEIN COUPLED RECEPTOR (GPCR); FUNCTIONS IN: abscisic acid binding, catalytic activity; INVOLVED IN: maintenance of seed dormancy, regulation of abscisic acid mediated signaling; LOCATED IN: plasma membrane, extrinsic to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase-like (InterPro:IPR008928), Lanthionine synthetase C-like (InterPro:IPR007822); BEST Arabidopsis thaliana protein match is: GCL2 (GCR2-LIKE 2); catalytic (TAIR:AT2G20770.1); Has 442 Blast hits to 434 proteins in 135 species: Archae - 0; Bacteria - 106; Metazoa - 235; Fungi - 31; Plants - 43; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT1G52920.1p  transcript_id AT1G52920.1  protein_id AT1G52920.1p  transcript_id AT1G52920.1  
At1g52930	chr1:019711261	0.0	W/19711261-19711469,19711568-19711709,19712044-19712122,19712299-19712423,19712519-19712689,19712774-19712872,19712966-19713103	AT1G52930.1  CDS  gene_syn F14G24.20, F14G24_20  go_component cellular_component|GO:0005575||ND  product brix domain-containing protein  note brix domain-containing protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); BEST Arabidopsis thaliana protein match is: brix domain-containing protein (TAIR:AT3G15460.1); Has 299 Blast hits to 299 proteins in 145 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 88; Plants - 33; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT1G52930.1p  transcript_id AT1G52930.1  protein_id AT1G52930.1p  transcript_id AT1G52930.1  
At1g52940	chr1:019716402	0.0	W/19716402-19716452,19720709-19720918,19721022-19721130,19722601-19722827,19722891-19722954,19723104-19723446,19723530-19723716	AT1G52940.1  CDS  gene_syn ATPAP5, PAP5, PURPLE ACID PHOSPHATASE 5  gene PAP5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function acid phosphatase activity|GO:0003993|16244908|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PAP5 (PURPLE ACID PHOSPHATASE 5); acid phosphatase/ protein serine/threonine phosphatase  note PURPLE ACID PHOSPHATASE 5 (PAP5); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, fruit, flower, root, leaf; CONTAINS InterPro DOMAIN/s: Purple acid phosphatase, N-terminal (InterPro:IPR015914), Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: PAP11 (PURPLE ACID PHOSPHATASE 11); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT2G18130.1); Has 1147 Blast hits to 1125 proteins in 243 species: Archae - 2; Bacteria - 278; Metazoa - 165; Fungi - 75; Plants - 442; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink).  protein_id AT1G52940.1p  transcript_id AT1G52940.1  protein_id AT1G52940.1p  transcript_id AT1G52940.1  
At1g52942	chr1:019724222	0.0	W/19724222-19724588	AT1G52942.1  pseudogenic_transcript  pseudo  function Pseudogene of AT2G18120; SRS4 (SHI-RELATED SEQUENCE 4)  
At1g52950	chr1:019725483	0.0	W/19725483-19725629,19725726-19725990,19726093-19726189,19726283-19726407,19726488-19726572,19726658-19726787,19726876-19727060,19727157-19727280,19727373-19727585,19727678-19728007	AT1G52950.1  CDS  gene_syn F14G24.22, F14G24_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product replication protein-related  note replication protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Protein of unknown function DUF223, Arabidopsis thaliana (InterPro:IPR003871), Replication factor-A, C-terminal (InterPro:IPR013955); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G05642.1); Has 471 Blast hits to 454 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 93; Plants - 253; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT1G52950.1p  transcript_id AT1G52950.1  protein_id AT1G52950.1p  transcript_id AT1G52950.1  
At1g52960	chr1:019731631	0.0	W/19731631-19735204	AT1G52960.1  mRNA_TE_gene  pseudo  gene_syn F14G24.23, F14G24_23  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13250.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30560.1); similar to AT hook motif-containing protein-related [Arabidopsis thaliana] (TAIR:AT3G42100.1); similar to hypothetical protein 27.t00039 [Brassica oleracea] (GB:ABD65060.1); similar to hypothetical protein 31.t00030 [Brassica oleracea] (GB:ABD65117.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE80108.1); contains InterPro domain Protein of unknown function DUF889, eukaryote; (InterPro:IPR010285)  
At1g52970	chr1:019736634	0.0	C/19736634-19737083	AT1G52970.1  CDS  gene_syn F14G24.24, F14G24_24  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, sepal; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G45190.1); Has 41 Blast hits to 41 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G52970.1p  transcript_id AT1G52970.1  protein_id AT1G52970.1p  transcript_id AT1G52970.1  
At1g52980	chr1:019737493	0.0	W/19737493-19737727,19737813-19737946,19738032-19738161,19738243-19738406,19738489-19738590,19738690-19738794,19738924-19739052,19739138-19739278,19739405-19739505,19739595-19739652,19739770-19740201	AT1G52980.1  CDS  gene_syn F14G24.25, F14G24_25  go_component intracellular|GO:0005622||IEA  go_function GTP binding|GO:0005525||IEA  go_process biological_process|GO:0008150||ND  go_function GTP binding|GO:0005525||ISS  product GTP-binding family protein  note GTP-binding family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding (InterPro:IPR005289), GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917), NGP1, N-terminal (InterPro:IPR012971); BEST Arabidopsis thaliana protein match is: GTP-binding family protein (TAIR:AT3G07050.1); Has 32810 Blast hits to 6274 proteins in 1119 species: Archae - 94; Bacteria - 28774; Metazoa - 1161; Fungi - 665; Plants - 221; Viruses - 129; Other Eukaryotes - 1766 (source: NCBI BLink).  protein_id AT1G52980.1p  transcript_id AT1G52980.1  protein_id AT1G52980.1p  transcript_id AT1G52980.1  
At1g52990	chr1:019743310	0.0	C/19743310-19743449,19742640-19743071,19741245-19741360,19740503-19740756	AT1G52990.1  CDS  gene_syn F8L10.14, F8L10_14  go_component endomembrane system|GO:0012505||IEA  go_process cell redox homeostasis|GO:0045454||IEA  go_function nucleic acid binding|GO:0003676||IEA  product thioredoxin family protein  note thioredoxin family protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT5G65005.1); Has 9827 Blast hits to 9821 proteins in 1622 species: Archae - 141; Bacteria - 4974; Metazoa - 738; Fungi - 403; Plants - 730; Viruses - 3; Other Eukaryotes - 2838 (source: NCBI BLink).  protein_id AT1G52990.1p  transcript_id AT1G52990.1  protein_id AT1G52990.1p  transcript_id AT1G52990.1  
At1g53000	chr1:019746915	0.0	C/19746915-19747133,19746613-19746658,19746370-19746456,19746152-19746276,19745895-19746034,19745721-19745772,19745533-19745643,19745330-19745422	AT1G53000.1  CDS  go_process lipopolysaccharide biosynthetic process|GO:0009103||IEA  go_function 3-deoxy-manno-octulosonate cytidylyltransferase activity|GO:0008690||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process lipopolysaccharide biosynthetic process|GO:0009103||ISS  go_function nucleotidyltransferase activity|GO:0016779||ISS  product cytidylyltransferase family  note cytidylyltransferase family; FUNCTIONS IN: 3-deoxy-manno-octulosonate cytidylyltransferase activity, nucleotidyltransferase activity; INVOLVED IN: lipopolysaccharide biosynthetic process; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 3-deoxy-D-manno-octulosonate cytidylyltransferase (InterPro:IPR004528), Acylneuraminate cytidylyltransferase (InterPro:IPR003329); Has 5651 Blast hits to 5649 proteins in 889 species: Archae - 22; Bacteria - 2201; Metazoa - 8; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 3392 (source: NCBI BLink).  protein_id AT1G53000.1p  transcript_id AT1G53000.1  protein_id AT1G53000.1p  transcript_id AT1G53000.1  
At1g53010	chr1:019747847	0.0	W/19747847-19748383	AT1G53010.1  CDS  gene_syn F8L10.17  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: stem, root, pollen tube; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G18773.1); Has 5251 Blast hits to 5237 proteins in 204 species: Archae - 0; Bacteria - 0; Metazoa - 1736; Fungi - 342; Plants - 2394; Viruses - 30; Other Eukaryotes - 749 (source: NCBI BLink).  protein_id AT1G53010.1p  transcript_id AT1G53010.1  protein_id AT1G53010.1p  transcript_id AT1G53010.1  
At1g53020	chr1:019759400	0.0	C/19759400-19759474,19758272-19758997,19758110-19758173,19757898-19758037,19757498-19757809,19757076-19757386,19755829-19755859,19755404-19755547,19755227-19755290,19755011-19755150,19754638-19754922,19754285-19754516,19754089-19754143,19752831-19752873,19752578-19752694,19752407-19752470,19752192-19752331,19752050-19752109,19751798-19751971,19751372-19751686	AT1G53020.1  CDS  gene_syn F8L10.11, F8L10_11, HO2 FAMILY UBIQUITIN CONJUGATION ENZYME 3, PFU3, UBC26, UBIQUITIN-CONJUGATING ENZYME 26  gene UBC26  go_process post-translational protein modification|GO:0043687||IEA  go_process regulation of protein metabolic process|GO:0051246||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC26 (UBIQUITIN-CONJUGATING ENZYME 26); ubiquitin-protein ligase  note UBIQUITIN-CONJUGATING ENZYME 26 (UBC26); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: regulation of protein metabolic process, post-translational protein modification; EXPRESSED IN: sperm cell, leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC25 (UBIQUITIN-CONJUGATING ENZYME 25); small conjugating protein ligase (TAIR:AT3G15355.1); Has 11322 Blast hits to 5128 proteins in 283 species: Archae - 0; Bacteria - 0; Metazoa - 5430; Fungi - 2052; Plants - 1903; Viruses - 35; Other Eukaryotes - 1902 (source: NCBI BLink).  protein_id AT1G53020.1p  transcript_id AT1G53020.1  protein_id AT1G53020.1p  transcript_id AT1G53020.1  
At1g53030	chr1:019760224	0.0	C/19760224-19760442	AT1G53030.1  CDS  gene_syn F8L10.24, F8L10_24  function encodes a copper chaperone, can functional complements the yeast COX17 null mutant. May play a role in the delivery of copper to mitochondria. Expressed in roots and thus may also play a role in copper transport in the roots.  go_component mitochondrial intermembrane space|GO:0005758||IEA  go_process copper ion transport|GO:0006825||IEA  go_process copper ion transport|GO:0006825||ISS  go_function copper chaperone activity|GO:0016531|12196180|IGI  go_function copper chaperone activity|GO:0016531||ISS  product cytochrome c oxidase copper chaperone family protein  note cytochrome c oxidase copper chaperone family protein; FUNCTIONS IN: copper chaperone activity; INVOLVED IN: copper ion transport; LOCATED IN: mitochondrial intermembrane space; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase copper chaperone (InterPro:IPR007745); BEST Arabidopsis thaliana protein match is: ATCOX17; copper chaperone (TAIR:AT3G15352.1); Has 200 Blast hits to 200 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 17; Plants - 36; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT1G53030.1p  transcript_id AT1G53030.1  protein_id AT1G53030.1p  transcript_id AT1G53030.1  
At1g53035	chr1:019761866	0.0	C/19761866-19762318	AT1G53035.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15358.1); Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G53035.1p  transcript_id AT1G53035.1  protein_id AT1G53035.1p  transcript_id AT1G53035.1  
At1g53039	chr1:019764080	0.0	W/19764080-19764220	AT1G53039.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G53039.1p  transcript_id AT1G53039.1  protein_id AT1G53039.1p  transcript_id AT1G53039.1  
At1g53040	chr1:019766726	0.0	C/19766726-19766870,19766373-19766642,19766065-19766281,19765875-19765984,19765585-19765787,19765391-19765494,19765120-19765307,19764830-19765029,19764567-19764752	AT1G53040.1  CDS  gene_syn F8L10.10, F8L10_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF616 (InterPro:IPR006852); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28240.1); Has 195 Blast hits to 195 proteins in 29 species: Archae - 6; Bacteria - 24; Metazoa - 2; Fungi - 2; Plants - 112; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT1G53040.1p  transcript_id AT1G53040.1  protein_id AT1G53040.1p  transcript_id AT1G53040.1  
At1g53040	chr1:019766726	0.0	C/19766726-19766870,19766373-19766642,19766065-19766281,19765875-19765984,19765585-19765787,19765391-19765494,19765120-19765307,19764830-19765029,19764567-19764752	AT1G53040.2  CDS  gene_syn F8L10.10, F8L10_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF616 (InterPro:IPR006852); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28240.1); Has 195 Blast hits to 195 proteins in 29 species: Archae - 6; Bacteria - 24; Metazoa - 2; Fungi - 2; Plants - 112; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT1G53040.2p  transcript_id AT1G53040.2  protein_id AT1G53040.2p  transcript_id AT1G53040.2  
At1g53050	chr1:019772574	0.0	W/19772574-19772990,19773269-19773553,19773644-19773961,19774064-19774291,19774393-19774493,19774620-19774728,19774822-19775229,19775313-19775531	AT1G53050.1  CDS  gene_syn F8L10.9, F8L10_9  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G09600.1); Has 91001 Blast hits to 89920 proteins in 2875 species: Archae - 45; Bacteria - 7929; Metazoa - 39540; Fungi - 8389; Plants - 17795; Viruses - 415; Other Eukaryotes - 16888 (source: NCBI BLink).  protein_id AT1G53050.1p  transcript_id AT1G53050.1  protein_id AT1G53050.1p  transcript_id AT1G53050.1  
At1g53060	chr1:019776052	0.0	W/19776052-19776780	AT1G53060.1  CDS  gene_syn F8L10.8, F8L10_8  go_function sugar binding|GO:0005529||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function carbohydrate binding|GO:0030246||ISS  product legume lectin family protein  note legume lectin family protein; FUNCTIONS IN: carbohydrate binding, sugar binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), L-type lectin, plant (InterPro:IPR016363); BEST Arabidopsis thaliana protein match is: legume lectin family protein (TAIR:AT1G53070.1); Has 1374 Blast hits to 1362 proteins in 113 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 0; Plants - 1346; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G53060.1p  transcript_id AT1G53060.1  protein_id AT1G53060.1p  transcript_id AT1G53060.1  
At1g53070	chr1:019778371	0.0	W/19778371-19779189	AT1G53070.1  CDS  gene_syn F8L10.7, F8L10_7  go_component cell wall|GO:0005618|15593128|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_function sugar binding|GO:0005529||IEA  go_process biological_process|GO:0008150||ND  go_function carbohydrate binding|GO:0030246||ISS  product legume lectin family protein  note legume lectin family protein; FUNCTIONS IN: carbohydrate binding, sugar binding; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), L-type lectin, plant (InterPro:IPR016363); BEST Arabidopsis thaliana protein match is: legume lectin family protein (TAIR:AT1G53080.1); Has 1405 Blast hits to 1392 proteins in 107 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 0; Plants - 1380; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G53070.1p  transcript_id AT1G53070.1  protein_id AT1G53070.1p  transcript_id AT1G53070.1  
At1g53080	chr1:019781368	0.0	W/19781368-19782219	AT1G53080.1  CDS  gene_syn F8L10.6, F8L10_6  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_function sugar binding|GO:0005529||IEA  go_process biological_process|GO:0008150||ND  go_function carbohydrate binding|GO:0030246||ISS  product legume lectin family protein  note legume lectin family protein; FUNCTIONS IN: carbohydrate binding, sugar binding; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), L-type lectin, plant (InterPro:IPR016363); BEST Arabidopsis thaliana protein match is: legume lectin family protein (TAIR:AT5G03350.1); Has 1529 Blast hits to 1517 proteins in 109 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 0; Plants - 1511; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G53080.1p  transcript_id AT1G53080.1  protein_id AT1G53080.1p  transcript_id AT1G53080.1  
At1g53090	chr1:019783748	0.0	W/19783748-19784368,19784456-19784613,19784710-19785607,19785693-19785839,19785945-19786256,19786348-19786407,19786502-19786690	AT1G53090.1  CDS  gene_syn F8L10.5, F8L10_5, SPA1-RELATED 4, SPA4  gene SPA4  function Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants.  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function signal transducer activity|GO:0004871||ISS  go_function protein binding|GO:0005515|16854975|IPI  product SPA4 (SPA1-RELATED 4); protein binding / signal transducer  note SPA1-RELATED 4 (SPA4); FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Protein kinase, core (InterPro:IPR000719), WD40 repeat, region (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: SPA3 (SPA1-RELATED 3); protein binding / signal transducer (TAIR:AT3G15354.1); Has 29304 Blast hits to 17228 proteins in 540 species: Archae - 36; Bacteria - 3998; Metazoa - 12941; Fungi - 5644; Plants - 2586; Viruses - 0; Other Eukaryotes - 4099 (source: NCBI BLink).  protein_id AT1G53090.1p  transcript_id AT1G53090.1  protein_id AT1G53090.1p  transcript_id AT1G53090.1  
At1g53090	chr1:019783748	0.0	W/19783748-19784368,19784456-19784613,19784710-19785607,19785693-19785839,19785945-19786256,19786348-19786407,19786502-19786690	AT1G53090.2  CDS  gene_syn F8L10.5, F8L10_5, SPA1-RELATED 4, SPA4  gene SPA4  function Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants.  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function signal transducer activity|GO:0004871||ISS  go_function protein binding|GO:0005515|16854975|IPI  product SPA4 (SPA1-RELATED 4); protein binding / signal transducer  note SPA1-RELATED 4 (SPA4); FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Protein kinase, core (InterPro:IPR000719), WD40 repeat, region (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: SPA3 (SPA1-RELATED 3); protein binding / signal transducer (TAIR:AT3G15354.1); Has 29304 Blast hits to 17228 proteins in 540 species: Archae - 36; Bacteria - 3998; Metazoa - 12941; Fungi - 5644; Plants - 2586; Viruses - 0; Other Eukaryotes - 4099 (source: NCBI BLink).  protein_id AT1G53090.2p  transcript_id AT1G53090.2  protein_id AT1G53090.2p  transcript_id AT1G53090.2  
At1g53100	chr1:019787922	0.0	C/19787922-19788504,19787769-19787844,19787575-19787690,19786990-19787486	AT1G53100.1  CDS  gene_syn F8L10.4, F8L10_4  go_component membrane|GO:0016020||IEA  go_function acetylglucosaminyltransferase activity|GO:0008375||IEA  go_component membrane|GO:0016020||ISS  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function acetylglucosaminyltransferase activity|GO:0008375||ISS  product acetylglucosaminyltransferase  note acetylglucosaminyltransferase; FUNCTIONS IN: acetylglucosaminyltransferase activity; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 14 (InterPro:IPR003406); BEST Arabidopsis thaliana protein match is: glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein (TAIR:AT3G15350.2); Has 689 Blast hits to 688 proteins in 87 species: Archae - 0; Bacteria - 18; Metazoa - 460; Fungi - 0; Plants - 188; Viruses - 14; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G53100.1p  transcript_id AT1G53100.1  protein_id AT1G53100.1p  transcript_id AT1G53100.1  
At1g53110	chr1:019790434	0.0	W/19790434-19790715,19790793-19791023,19791124-19791222,19791309-19792016	AT1G53110.1  CDS  gene_syn F8L10.22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: PPI2 (proton pump interactor 2); protein binding (TAIR:AT3G15340.2); Has 9097 Blast hits to 6362 proteins in 564 species: Archae - 111; Bacteria - 824; Metazoa - 3326; Fungi - 733; Plants - 436; Viruses - 39; Other Eukaryotes - 3628 (source: NCBI BLink).  protein_id AT1G53110.1p  transcript_id AT1G53110.1  protein_id AT1G53110.1p  transcript_id AT1G53110.1  
At1g53120	chr1:019792798	0.0	W/19792798-19792942,19793111-19793220,19793301-19793432,19793522-19793595,19793679-19793784,19793883-19793951,19794038-19794102,19794186-19794284,19794366-19794465,19794543-19794605	AT1G53120.1  CDS  gene_syn F8L10.3, F8L10_3  go_component chloroplast|GO:0009507|18431481|IDA  go_function RNA binding|GO:0003723||IEA  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA-binding S4 domain-containing protein  note RNA-binding S4 domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding S4 (InterPro:IPR002942), Photosystem II S4 domain protein (InterPro:IPR017506); Has 774 Blast hits to 774 proteins in 309 species: Archae - 0; Bacteria - 585; Metazoa - 2; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 167 (source: NCBI BLink).  protein_id AT1G53120.1p  transcript_id AT1G53120.1  protein_id AT1G53120.1p  transcript_id AT1G53120.1  
At1g53130	chr1:019794947	0.0	C/19794947-19795453	AT1G53130.1  CDS  gene_syn F8L10.2, F8L10_2, GRI, GRIM REAPER  gene GRI  function Encodes GRIM REAPER (GRI), involved in the regulation of cell death induced by extracellular ROS (reactive oxygen species). Secreted into the extracellular space.  go_component extracellular space|GO:0005615|19279211|IDA  go_process salicylic acid mediated signaling pathway|GO:0009863|19279211|IMP  go_process jasmonic acid mediated signaling pathway|GO:0009867|19279211|IMP  go_process response to ozone|GO:0010193|19279211|IMP  go_process positive regulation of cell death|GO:0010942|19279211|IMP  go_process defense response to bacterium|GO:0042742|19279211|IMP  go_process seed development|GO:0048316|19279211|IMP  go_process regulation of jasmonic acid biosynthetic process|GO:0080141|19279211|IMP  go_process regulation of salicylic acid biosynthetic process|GO:0080142|19279211|IMP  product GRI (GRIM REAPER)  note GRIM REAPER (GRI); INVOLVED IN: in 8 processes; LOCATED IN: extracellular space; EXPRESSED IN: flower, leaf; CONTAINS InterPro DOMAIN/s: Stigma-specific protein Stig1 (InterPro:IPR006969); BEST Arabidopsis thaliana protein match is: stigma-specific Stig1 family protein (TAIR:AT4G26880.1); Has 133 Blast hits to 89 proteins in 20 species: Archae - 0; Bacteria - 63; Metazoa - 0; Fungi - 6; Plants - 61; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G53130.1p  transcript_id AT1G53130.1  protein_id AT1G53130.1p  transcript_id AT1G53130.1  
At1g53140	chr1:019799271	0.0	W/19799271-19799624,19799742-19799933,19800014-19800220,19800381-19800809,19800922-19801149,19801235-19801430,19801511-19802171,19802255-19802441	AT1G53140.1  CDS  gene_syn F8L10.1, F8L10_1  function Encodes DRP5A, a dynamin protein involved in cytokinesis in Arabidopsis.  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_process cytokinesis|GO:0000910|18809930|IMP  go_function GTP binding|GO:0005525||ISS  product dynamin family protein  note dynamin family protein; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: cytokinesis; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Dynamin, GTPase region (InterPro:IPR001401); BEST Arabidopsis thaliana protein match is: ARC5 (ACCUMULATION AND REPLICATION OF CHLOROPLAST 5); GTP binding / GTPase (TAIR:AT3G19720.2); Has 1768 Blast hits to 1765 proteins in 219 species: Archae - 0; Bacteria - 0; Metazoa - 891; Fungi - 388; Plants - 250; Viruses - 0; Other Eukaryotes - 239 (source: NCBI BLink).  protein_id AT1G53140.1p  transcript_id AT1G53140.1  protein_id AT1G53140.1p  transcript_id AT1G53140.1  
At1g53160	chr1:019806478	0.0	W/19806478-19806776,19806855-19807080	AT1G53160.1  CDS  gene_syn F8L10.12, F8L10_12, SPL4, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4  gene SPL4  function Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3 UTR.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of vegetative phase change|GO:0010321|16914499|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4); DNA binding / transcription factor  note SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4 (SPL4); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of vegetative phase change, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Squamosa promoter-binding protein (InterPro:IPR017238), Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5); DNA binding / transcription factor (TAIR:AT3G15270.1); Has 529 Blast hits to 529 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 529; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G53160.1p  transcript_id AT1G53160.1  protein_id AT1G53160.1p  transcript_id AT1G53160.1  
At1g53160	chr1:019806478	0.0	W/19806478-19806776,19806855-19807080	AT1G53160.2  CDS  gene_syn F8L10.12, F8L10_12, SPL4, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4  gene SPL4  function Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3 UTR.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of vegetative phase change|GO:0010321|16914499|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4); DNA binding / transcription factor  note SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4 (SPL4); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of vegetative phase change, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Squamosa promoter-binding protein (InterPro:IPR017238), Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5); DNA binding / transcription factor (TAIR:AT3G15270.1); Has 529 Blast hits to 529 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 529; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G53160.2p  transcript_id AT1G53160.2  protein_id AT1G53160.2p  transcript_id AT1G53160.2  
At1g53163	chr1:019812292	0.0	W/19812292-19813194	AT1G53163.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15250.1); Has 271 Blast hits to 172 proteins in 55 species: Archae - 0; Bacteria - 59; Metazoa - 50; Fungi - 42; Plants - 12; Viruses - 1; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT1G53163.1p  transcript_id AT1G53163.1  protein_id AT1G53163.1p  transcript_id AT1G53163.1  
At1g53165	chr1:019814386	0.0	W/19814386-19814480,19814795-19814851,19815121-19815148,19815231-19815353,19815490-19815601,19815701-19815738,19815831-19815884,19816201-19816269,19816397-19816513,19816663-19816731,19816820-19816899,19817096-19817224,19817313-19817562,19817803-19817889,19818005-19818166,19818256-19818368,19818454-19818589,19818707-19818834,19818946-19819101,19819194-19819233	AT1G53165.1  CDS  gene_syn ATMAP4K ALPHA1, F8L10.20  gene ATMAP4K ALPHA1  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_process hyperosmotic response|GO:0006972|12376626|IEP  go_process response to wounding|GO:0009611|12376626|IEP  go_process response to salt stress|GO:0009651|12376626|IEP  go_function kinase activity|GO:0016301||ISS  product ATMAP4K ALPHA1; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note ATMAP4K ALPHA1; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: response to salt stress, hyperosmotic response, response to wounding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT3G15220.1); Has 96724 Blast hits to 95040 proteins in 2970 species: Archae - 80; Bacteria - 8655; Metazoa - 42218; Fungi - 8499; Plants - 18630; Viruses - 533; Other Eukaryotes - 18109 (source: NCBI BLink).  protein_id AT1G53165.1p  transcript_id AT1G53165.1  protein_id AT1G53165.1p  transcript_id AT1G53165.1  
At1g53165	chr1:019814386	0.0	W/19814386-19814480,19814795-19814851,19815121-19815148,19815231-19815353,19815490-19815601,19815701-19815738,19815831-19815884,19816201-19816269,19816397-19816513,19816663-19816731,19816820-19816899,19817096-19817224,19817313-19817562,19817803-19817889,19818005-19818166,19818256-19818368,19818454-19818589,19818707-19818834,19818946-19819101,19819194-19819233	AT1G53165.2  CDS  gene_syn ATMAP4K ALPHA1, F8L10.20  gene ATMAP4K ALPHA1  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_process hyperosmotic response|GO:0006972|12376626|IEP  go_process response to wounding|GO:0009611|12376626|IEP  go_process response to salt stress|GO:0009651|12376626|IEP  go_function kinase activity|GO:0016301||ISS  product ATMAP4K ALPHA1; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note ATMAP4K ALPHA1; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: response to salt stress, hyperosmotic response, response to wounding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT3G15220.1); Has 96724 Blast hits to 95040 proteins in 2970 species: Archae - 80; Bacteria - 8655; Metazoa - 42218; Fungi - 8499; Plants - 18630; Viruses - 533; Other Eukaryotes - 18109 (source: NCBI BLink).  protein_id AT1G53165.2p  transcript_id AT1G53165.2  protein_id AT1G53165.2p  transcript_id AT1G53165.2  
At1g53170	chr1:019821539	0.0	C/19821539-19822096	AT1G53170.1  CDS  gene_syn ATERF-8, ATERF8, ERF TRANSCRIPTION FACTOR8, ERF8, ETHYLENE RESPONSE ELEMENT BINDING FACTOR 4, F8L10.19  gene ERF8  function encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-8). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.  go_component nucleus|GO:0005634|11487705|IC  go_process regulation of transcription, DNA-dependent|GO:0006355|11487705|TAS  go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS  go_function DNA binding|GO:0003677|11487705|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11487705|TAS  go_function transcription factor activity|GO:0003700|9687012|TAS  go_function transcription repressor activity|GO:0016564|11487705|TAS  product ERF8; DNA binding / transcription factor/ transcription repressor  note ERF8; FUNCTIONS IN: transcription repressor activity, transcription factor activity, DNA binding; INVOLVED IN: ethylene mediated signaling pathway, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4); DNA binding / protein binding / transcription factor/ transcription repressor (TAIR:AT3G15210.1); Has 3845 Blast hits to 3687 proteins in 200 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 3837; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G53170.1p  transcript_id AT1G53170.1  protein_id AT1G53170.1p  transcript_id AT1G53170.1  
At1g53180	chr1:019831582	0.0	W/19831582-19832370,19832440-19832727	AT1G53180.1  CDS  gene_syn F12M16.8, F12M16_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15115.1); Has 50 Blast hits to 50 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 4; Plants - 17; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G53180.1p  transcript_id AT1G53180.1  protein_id AT1G53180.1p  transcript_id AT1G53180.1  
At1g53190	chr1:019838072	0.0	W/19838072-19838744,19838823-19839214,19839310-19839414,19839597-19839764,19839857-19840003	AT1G53190.1  CDS  gene_syn F12M16.10, F12M16_10  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G15070.1); Has 5875 Blast hits to 5863 proteins in 211 species: Archae - 0; Bacteria - 0; Metazoa - 2106; Fungi - 446; Plants - 2141; Viruses - 28; Other Eukaryotes - 1154 (source: NCBI BLink).  protein_id AT1G53190.1p  transcript_id AT1G53190.1  protein_id AT1G53190.1p  transcript_id AT1G53190.1  
At1g53190	chr1:019838072	0.0	W/19838072-19838744,19838823-19839214,19839310-19839414,19839597-19839764,19839857-19840003	AT1G53190.2  CDS  gene_syn F12M16.10, F12M16_10  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G15070.1); Has 5875 Blast hits to 5863 proteins in 211 species: Archae - 0; Bacteria - 0; Metazoa - 2106; Fungi - 446; Plants - 2141; Viruses - 28; Other Eukaryotes - 1154 (source: NCBI BLink).  protein_id AT1G53190.2p  transcript_id AT1G53190.2  protein_id AT1G53190.2p  transcript_id AT1G53190.2  
At1g53200	chr1:019842651	0.0	C/19842651-19842692,19842435-19842517,19841780-19842213,19841526-19841689,19841312-19841397,19841067-19841197,19840486-19840970	AT1G53200.2  CDS  gene_syn F12M16.11, F12M16_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G53200.2p  transcript_id AT1G53200.2  protein_id AT1G53200.2p  transcript_id AT1G53200.2  
At1g53200	chr1:019842819	0.0	C/19842819-19843169,19842634-19842741,19842435-19842517,19841780-19842213,19841526-19841689,19841312-19841397,19841067-19841197,19840486-19840970	AT1G53200.1  CDS  gene_syn F12M16.11, F12M16_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 12 Blast hits to 12 proteins in 5 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G53200.1p  transcript_id AT1G53200.1  protein_id AT1G53200.1p  transcript_id AT1G53200.1  
At1g53210	chr1:019844790	0.0	W/19844790-19845192,19845652-19845837,19845984-19846165,19846285-19846430,19846507-19846783,19846882-19847196,19847285-19847533	AT1G53210.1  CDS  gene_syn F12M16.12, F12M16_12  go_component plant-type vacuole|GO:0000325|16618929|IDA  go_component vacuole|GO:0005773|14760709|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function calcium ion binding|GO:0005509||IEA  go_component vacuolar membrane|GO:0005774|16618929|IDA  go_component membrane|GO:0016020|11152613|ISS  go_function calcium ion binding|GO:0005509||ISS  product sodium/calcium exchanger family protein / calcium-binding EF hand family protein  note sodium/calcium exchanger family protein / calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, membrane, plant-type vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Sodium/calcium exchanger membrane region (InterPro:IPR004837), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT2G34030.1); Has 365 Blast hits to 356 proteins in 99 species: Archae - 8; Bacteria - 43; Metazoa - 10; Fungi - 120; Plants - 154; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G53210.1p  transcript_id AT1G53210.1  protein_id AT1G53210.1p  transcript_id AT1G53210.1  
At1g53220	chr1:019847973	0.0	W/19847973-19848046	AT1G53220.1  tRNA  gene_syn 52273.TRNA-ILE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ile (anticodon: TAT)  transcript_id AT1G53220.1  
At1g53233	chr1:019850031	0.0	W/19850031-19852127	AT1G53233.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G53230  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G53233.1  
At1g53230	chr1:019850260	0.0	C/19850260-19851435	AT1G53230.1  CDS  gene_syn F12M16.13, F12M16_13, TCP3  gene TCP3  function Encodes a member of a recently identified plant transcription factor family that includes Teosinte branched 1, Cycloidea 1, and proliferating cell nuclear antigen (PCNA) factors, PCF1 and 2. Regulated by miR319. Involved in heterchronic regulation of leaf differentiation.  go_component cellular_component|GO:0005575||ND  go_process leaf morphogenesis|GO:0009965|18805992|IGI  go_process cell differentiation|GO:0030154|18805992|IGI  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process positive regulation of development, heterochronic|GO:0045962|18805992|IGI  go_process leaf development|GO:0048366|16169896|TAS  go_function transcription factor activity|GO:0003700|10363373|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product TCP3; transcription factor  note TCP3; FUNCTIONS IN: transcription factor activity; INVOLVED IN: cell differentiation, positive regulation of development, heterochronic, leaf development, leaf morphogenesis, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP4 (TCP family transcription factor 4); transcription factor (TAIR:AT3G15030.2); Has 1290 Blast hits to 1290 proteins in 312 species: Archae - 0; Bacteria - 8; Metazoa - 44; Fungi - 11; Plants - 1224; Viruses - 1; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G53230.1p  transcript_id AT1G53230.1  protein_id AT1G53230.1p  transcript_id AT1G53230.1  
At1g53240	chr1:019856560	0.0	C/19856560-19856802,19856249-19856422,19855833-19856001,19855637-19855698,19855408-19855529,19855195-19855312,19854966-19855103	AT1G53240.1  CDS  go_component cell wall|GO:0005618|16287169|IDA  go_component mitochondrion|GO:0005739|15276431|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component mitochondrion|GO:0005739|11743114|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process response to cold|GO:0009409|14535880|IEP  go_process peptidyl-cysteine S-nitrosylation|GO:0018119|18297659|IDA  go_function malate dehydrogenase activity|GO:0016615|9774405|IDA  product malate dehydrogenase (NAD), mitochondrial  note malate dehydrogenase (NAD), mitochondrial; FUNCTIONS IN: malate dehydrogenase activity; INVOLVED IN: response to cadmium ion, response to salt stress, response to cold, defense response to bacterium, peptidyl-cysteine S-nitrosylation; LOCATED IN: mitochondrion, cell wall, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Malate dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria (InterPro:IPR010097), NAD(P)-binding (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Lactate/malate dehydrogenase (InterPro:IPR001236), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: malate dehydrogenase (NAD), mitochondrial, putative (TAIR:AT3G15020.1); Has 10375 Blast hits to 10372 proteins in 2380 species: Archae - 179; Bacteria - 5763; Metazoa - 1012; Fungi - 359; Plants - 516; Viruses - 0; Other Eukaryotes - 2546 (source: NCBI BLink).  protein_id AT1G53240.1p  transcript_id AT1G53240.1  protein_id AT1G53240.1p  transcript_id AT1G53240.1  
At1g53250	chr1:019857468	0.0	W/19857468-19857481,19857675-19858042,19858125-19858177,19858311-19858348,19858428-19858845,19858932-19859156	AT1G53250.1  CDS  gene_syn F12M16.15, F12M16_15  go_function endonuclease activity|GO:0004519||IEA  product endonuclease  note endonuclease; FUNCTIONS IN: endonuclease activity; CONTAINS InterPro DOMAIN/s: Intron-encoded nuclease 2 (InterPro:IPR003611); BEST Arabidopsis thaliana protein match is: endonuclease (TAIR:AT1G53800.2); Has 11318 Blast hits to 6905 proteins in 559 species: Archae - 33; Bacteria - 997; Metazoa - 4641; Fungi - 957; Plants - 325; Viruses - 24; Other Eukaryotes - 4341 (source: NCBI BLink).  protein_id AT1G53250.1p  transcript_id AT1G53250.1  protein_id AT1G53250.1p  transcript_id AT1G53250.1  
At1g53260	chr1:019860340	0.0	C/19860340-19860421,19860192-19860257,19859393-19860060	AT1G53260.1  CDS  gene_syn F12M16.16, F12M16_16  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15000.1); Has 28937 Blast hits to 15611 proteins in 685 species: Archae - 20; Bacteria - 1603; Metazoa - 14280; Fungi - 4343; Plants - 4601; Viruses - 472; Other Eukaryotes - 3618 (source: NCBI BLink).  protein_id AT1G53260.1p  transcript_id AT1G53260.1  protein_id AT1G53260.1p  transcript_id AT1G53260.1  
At1g53260	chr1:019860340	0.0	C/19860340-19860421,19860192-19860257,19859782-19860060,19859406-19859671	AT1G53260.2  CDS  gene_syn F12M16.16, F12M16_16  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15000.1); Has 155 Blast hits to 152 proteins in 23 species: Archae - 0; Bacteria - 2; Metazoa - 9; Fungi - 8; Plants - 127; Viruses - 1; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G53260.2p  transcript_id AT1G53260.2  protein_id AT1G53260.2p  transcript_id AT1G53260.2  
At1g53265	chr1:019861098	0.0	C/19861098-19861475	AT1G53265.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G53265.1p  transcript_id AT1G53265.1  protein_id AT1G53265.1p  transcript_id AT1G53265.1  
At1g53270	chr1:019862878	0.0	W/19862878-19864650	AT1G53270.1  CDS  gene_syn F12M16.17, F12M16_17  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ABC transporter family protein  note ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 (InterPro:IPR000412), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT2G13610.1); Has 241007 Blast hits to 218379 proteins in 2652 species: Archae - 4452; Bacteria - 163982; Metazoa - 7859; Fungi - 4668; Plants - 2825; Viruses - 6; Other Eukaryotes - 57215 (source: NCBI BLink).  protein_id AT1G53270.1p  transcript_id AT1G53270.1  protein_id AT1G53270.1p  transcript_id AT1G53270.1  
At1g53280	chr1:019867180	0.0	C/19867180-19867341,19866901-19867101,19866651-19866800,19866378-19866560,19865857-19865937,19865519-19865719,19865292-19865432,19864942-19865139	AT1G53280.1  CDS  gene_syn F12M16.18, F12M16_18  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  product DJ-1 family protein  note DJ-1 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DJ-1 (InterPro:IPR006287), ThiJ/PfpI (InterPro:IPR002818); BEST Arabidopsis thaliana protein match is: 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative (TAIR:AT3G14990.1); Has 6116 Blast hits to 3696 proteins in 1049 species: Archae - 200; Bacteria - 4904; Metazoa - 448; Fungi - 47; Plants - 178; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).  protein_id AT1G53280.1p  transcript_id AT1G53280.1  protein_id AT1G53280.1p  transcript_id AT1G53280.1  
At1g53282	chr1:019868130	0.0	C/19868130-19868335,19868004-19868040	AT1G53282.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53285.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G53282.1p  transcript_id AT1G53282.1  protein_id AT1G53282.1p  transcript_id AT1G53282.1  
At1g53285	chr1:019869904	0.0	C/19869904-19870076,19869770-19869806	AT1G53285.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53282.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G53285.1p  transcript_id AT1G53285.1  protein_id AT1G53285.1p  transcript_id AT1G53285.1  
At1g53290	chr1:019871353	0.0	W/19871353-19871708,19872070-19872222,19872320-19872402,19872500-19872599,19872715-19872828,19872914-19873056,19873163-19873251	AT1G53290.1  CDS  gene_syn F12M16.19, F12M16_19  go_component membrane|GO:0016020||IEA  go_process protein amino acid glycosylation|GO:0006486||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product galactosyltransferase family protein  note galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: galactosyltransferase family protein (TAIR:AT3G14960.1); Has 933 Blast hits to 930 proteins in 78 species: Archae - 0; Bacteria - 2; Metazoa - 598; Fungi - 0; Plants - 316; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G53290.1p  transcript_id AT1G53290.1  protein_id AT1G53290.1p  transcript_id AT1G53290.1  
At1g53300	chr1:019879726	0.0	W/19879726-19880645,19880736-19880931,19881015-19881199,19881299-19881632,19881722-19881926,19882029-19882135,19882223-19882375	AT1G53300.1  CDS  gene_syn F12M16.20, F12M16_20, TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 1, TTL1  gene TTL1  go_process cell redox homeostasis|GO:0045454||IEA  go_function binding|GO:0005488||IEA  product TTL1 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 1); binding  note TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 1 (TTL1); FUNCTIONS IN: binding; INVOLVED IN: cell redox homeostasis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Tetratricopeptide TPR-1 (InterPro:IPR001440), Thioredoxin fold (InterPro:IPR012335), Tetratricopeptide-like helical (InterPro:IPR011990), Thioredoxin domain (InterPro:IPR013766), Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide region (InterPro:IPR013026), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: TTL2 (Tetratricopetide-repeat Thioredoxin-Like 2); binding (TAIR:AT3G14950.1); Has 27236 Blast hits to 12519 proteins in 865 species: Archae - 398; Bacteria - 4328; Metazoa - 7637; Fungi - 2832; Plants - 1650; Viruses - 126; Other Eukaryotes - 10265 (source: NCBI BLink).  protein_id AT1G53300.1p  transcript_id AT1G53300.1  protein_id AT1G53300.1p  transcript_id AT1G53300.1  
At1g53310	chr1:019887903	0.0	C/19887903-19888070,19887282-19887676,19887117-19887201,19886820-19887042,19886616-19886719,19886434-19886524,19886180-19886334,19885105-19886103,19884636-19885022,19884261-19884557	AT1G53310.1  CDS  gene_syn ATPPC1, F12M16.21, F12M16_21, PHOSPHOENOLPYRUVATE CARBOXYLASE 1  gene ATPPC1  function Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins.  go_component apoplast|GO:0048046|18538804|IDA  go_function catalytic activity|GO:0003824||IEA  go_function phosphoenolpyruvate carboxylase activity|GO:0008964||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_process tricarboxylic acid cycle|GO:0006099||ISS  go_process response to water deprivation|GO:0009414|16283377|IEP  go_process response to salt stress|GO:0009651|16283377|IEP  go_function phosphoenolpyruvate carboxylase activity|GO:0008964||ISS  product ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1); catalytic/ phosphoenolpyruvate carboxylase  note PHOSPHOENOLPYRUVATE CARBOXYLASE 1 (ATPPC1); FUNCTIONS IN: phosphoenolpyruvate carboxylase activity, catalytic activity; INVOLVED IN: response to salt stress, response to water deprivation, tricarboxylic acid cycle; LOCATED IN: cytosol, apoplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Phosphoenolpyruvate carboxylase, active site (InterPro:IPR018129), Phosphoenolpyruvate carboxylase (InterPro:IPR001449); BEST Arabidopsis thaliana protein match is: ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3); phosphoenolpyruvate carboxylase (TAIR:AT3G14940.1); Has 5244 Blast hits to 5208 proteins in 1306 species: Archae - 9; Bacteria - 1564; Metazoa - 1; Fungi - 0; Plants - 1273; Viruses - 0; Other Eukaryotes - 2397 (source: NCBI BLink).  protein_id AT1G53310.1p  transcript_id AT1G53310.1  protein_id AT1G53310.1p  transcript_id AT1G53310.1  
At1g53310	chr1:019887903	0.0	C/19887903-19888070,19887282-19887676,19887117-19887201,19886820-19887042,19886616-19886719,19886434-19886524,19886180-19886334,19885105-19886103,19884636-19885022,19884261-19884557	AT1G53310.2  CDS  gene_syn ATPPC1, F12M16.21, F12M16_21, PHOSPHOENOLPYRUVATE CARBOXYLASE 1  gene ATPPC1  function Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins.  go_component apoplast|GO:0048046|18538804|IDA  go_function catalytic activity|GO:0003824||IEA  go_function phosphoenolpyruvate carboxylase activity|GO:0008964||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_process tricarboxylic acid cycle|GO:0006099||ISS  go_process response to water deprivation|GO:0009414|16283377|IEP  go_process response to salt stress|GO:0009651|16283377|IEP  go_function phosphoenolpyruvate carboxylase activity|GO:0008964||ISS  product ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1); catalytic/ phosphoenolpyruvate carboxylase  note PHOSPHOENOLPYRUVATE CARBOXYLASE 1 (ATPPC1); FUNCTIONS IN: phosphoenolpyruvate carboxylase activity, catalytic activity; INVOLVED IN: response to salt stress, response to water deprivation, tricarboxylic acid cycle; LOCATED IN: cytosol, apoplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Phosphoenolpyruvate carboxylase, active site (InterPro:IPR018129), Phosphoenolpyruvate carboxylase (InterPro:IPR001449); BEST Arabidopsis thaliana protein match is: ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3); phosphoenolpyruvate carboxylase (TAIR:AT3G14940.1); Has 5244 Blast hits to 5208 proteins in 1306 species: Archae - 9; Bacteria - 1564; Metazoa - 1; Fungi - 0; Plants - 1273; Viruses - 0; Other Eukaryotes - 2397 (source: NCBI BLink).  protein_id AT1G53310.2p  transcript_id AT1G53310.2  protein_id AT1G53310.2p  transcript_id AT1G53310.2  
At1g53310	chr1:019887903	0.0	C/19887903-19888070,19887282-19887676,19887117-19887201,19886820-19887042,19886616-19886719,19886434-19886524,19886180-19886334,19885105-19886103,19884636-19885022,19884261-19884557	AT1G53310.3  CDS  gene_syn ATPPC1, F12M16.21, F12M16_21, PHOSPHOENOLPYRUVATE CARBOXYLASE 1  gene ATPPC1  function Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins.  go_component apoplast|GO:0048046|18538804|IDA  go_function catalytic activity|GO:0003824||IEA  go_function phosphoenolpyruvate carboxylase activity|GO:0008964||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_process tricarboxylic acid cycle|GO:0006099||ISS  go_process response to water deprivation|GO:0009414|16283377|IEP  go_process response to salt stress|GO:0009651|16283377|IEP  go_function phosphoenolpyruvate carboxylase activity|GO:0008964||ISS  product ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1); catalytic/ phosphoenolpyruvate carboxylase  note PHOSPHOENOLPYRUVATE CARBOXYLASE 1 (ATPPC1); FUNCTIONS IN: phosphoenolpyruvate carboxylase activity, catalytic activity; INVOLVED IN: response to salt stress, response to water deprivation, tricarboxylic acid cycle; LOCATED IN: cytosol, apoplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Phosphoenolpyruvate carboxylase, active site (InterPro:IPR018129), Phosphoenolpyruvate carboxylase (InterPro:IPR001449); BEST Arabidopsis thaliana protein match is: ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3); phosphoenolpyruvate carboxylase (TAIR:AT3G14940.1); Has 5244 Blast hits to 5208 proteins in 1306 species: Archae - 9; Bacteria - 1564; Metazoa - 1; Fungi - 0; Plants - 1273; Viruses - 0; Other Eukaryotes - 2397 (source: NCBI BLink).  protein_id AT1G53310.3p  transcript_id AT1G53310.3  protein_id AT1G53310.3p  transcript_id AT1G53310.3  
At1g53320	chr1:019893109	0.0	C/19893109-19893429,19892659-19892746,19892014-19892143,19891237-19891837	AT1G53320.1  CDS  gene_syn AtTLP7, F12M16.22, F12M16_22, TUBBY LIKE PROTEIN 7  gene AtTLP7  function Member of TLP family  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function phosphoric diester hydrolase activity|GO:0008081||ISS  product AtTLP7 (TUBBY LIKE PROTEIN 7); phosphoric diester hydrolase/ transcription factor  note TUBBY LIKE PROTEIN 7 (AtTLP7); FUNCTIONS IN: transcription factor activity, phosphoric diester hydrolase activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: AtTLP3 (TUBBY LIKE PROTEIN 3); phosphoric diester hydrolase/ transcription factor (TAIR:AT2G47900.2); Has 678 Blast hits to 674 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 293; Fungi - 2; Plants - 302; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).  protein_id AT1G53320.1p  transcript_id AT1G53320.1  protein_id AT1G53320.1p  transcript_id AT1G53320.1  
At1g53325	chr1:019895227	0.0	C/19895227-19895733	AT1G53325.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G58090.1); Has 112 Blast hits to 112 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 112; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G53325.1p  transcript_id AT1G53325.1  protein_id AT1G53325.1p  transcript_id AT1G53325.1  
At1g53330	chr1:019896027	0.0	W/19896027-19897442	AT1G53330.1  CDS  gene_syn F12M16.23, F12M16_23  function encodes a member of the pentatricopeptide repeat (PPR) gene family. T-DNA insertion mutants had a complex phenotypic expression, ranging from embryo lethal to seedling lethal, to just subtle changes.  go_process embryonic development|GO:0009790|17028967|IMP  go_process fruit development|GO:0010154|17028967|IMP  go_process root development|GO:0048364|17028967|IMP  go_process shoot development|GO:0048367|17028967|IMP  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: embryonic development, shoot development, fruit development, root development; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G62670.1); Has 18917 Blast hits to 5804 proteins in 179 species: Archae - 4; Bacteria - 16; Metazoa - 373; Fungi - 368; Plants - 17384; Viruses - 0; Other Eukaryotes - 772 (source: NCBI BLink).  protein_id AT1G53330.1p  transcript_id AT1G53330.1  protein_id AT1G53330.1p  transcript_id AT1G53330.1  
At1g53340	chr1:019898928	0.0	C/19898928-19900931	AT1G53340.1  CDS  gene_syn F12M16.24, F12M16_24  go_component intracellular|GO:0005622||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: intracellular; EXPRESSED IN: hypocotyl, root, stamen; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, RanBP2-type (InterPro:IPR001876), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT2G13900.1); Has 1000 Blast hits to 469 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 994; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G53340.1p  transcript_id AT1G53340.1  protein_id AT1G53340.1p  transcript_id AT1G53340.1  
At1g53345	chr1:019902561	0.0	W/19902561-19903538	AT1G53345.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09580.1); Has 127 Blast hits to 127 proteins in 44 species: Archae - 6; Bacteria - 54; Metazoa - 2; Fungi - 0; Plants - 23; Viruses - 5; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT1G53345.1p  transcript_id AT1G53345.1  protein_id AT1G53345.1p  transcript_id AT1G53345.1  
At1g53350	chr1:019903899	0.0	W/19903899-19904769,19904911-19905057,19905210-19906840,19906946-19906957,19907393-19907515	AT1G53350.1  CDS  gene_syn F12M16.35, F12M16_35  go_process apoptosis|GO:0006915||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product ATP binding  note ATP binding; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT5G35450.1); Has 11361 Blast hits to 10470 proteins in 414 species: Archae - 9; Bacteria - 687; Metazoa - 857; Fungi - 33; Plants - 9637; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).  protein_id AT1G53350.1p  transcript_id AT1G53350.1  protein_id AT1G53350.1p  transcript_id AT1G53350.1  
At1g53360	chr1:019907517	0.0	W/19907517-19908548	AT1G53360.1  CDS  gene_syn F12M16.25, F12M16_25  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G53370.1); Has 425 Blast hits to 400 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 425; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G53360.1p  transcript_id AT1G53360.1  protein_id AT1G53360.1p  transcript_id AT1G53360.1  
At1g53366	chr1:019909840	0.0	C/19909840-19909977	AT1G53366.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G53366.1p  transcript_id AT1G53366.1  protein_id AT1G53366.1p  transcript_id AT1G53366.1  
At1g53370	chr1:019910516	0.0	W/19910516-19910905,19910969-19911646	AT1G53370.1  CDS  gene_syn F12M16.26, F12M16_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein-related (TAIR:AT1G53360.1); Has 535 Blast hits to 520 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 535; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G53370.1p  transcript_id AT1G53370.1  protein_id AT1G53370.1p  transcript_id AT1G53370.1  
At1g53380	chr1:019913341	0.0	C/19913341-19914702	AT1G53380.1  CDS  gene_syn F12M16.27, F12M16_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF641, plant (InterPro:IPR006943); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14870.3); Has 197 Blast hits to 196 proteins in 19 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G53380.1p  transcript_id AT1G53380.1  protein_id AT1G53380.1p  transcript_id AT1G53380.1  
At1g53380	chr1:019913341	0.0	C/19913341-19914702	AT1G53380.2  CDS  gene_syn F12M16.27, F12M16_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF641, plant (InterPro:IPR006943); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14870.3); Has 197 Blast hits to 196 proteins in 19 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G53380.2p  transcript_id AT1G53380.2  protein_id AT1G53380.2p  transcript_id AT1G53380.2  
At1g53380	chr1:019913341	0.0	C/19913341-19914702	AT1G53380.3  CDS  gene_syn F12M16.27, F12M16_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF641, plant (InterPro:IPR006943); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14870.3); Has 197 Blast hits to 196 proteins in 19 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G53380.3p  transcript_id AT1G53380.3  protein_id AT1G53380.3p  transcript_id AT1G53380.3  
At1g53390	chr1:019918197	0.0	W/19918197-19918225,19918747-19918998,19919322-19919398,19919637-19919909,19920002-19920065,19920150-19920296,19920453-19920487,19920588-19920661,19920745-19921916,19922008-19922484,19922572-19922720,19922834-19923123,19923211-19923344,19923423-19923579	AT1G53390.1  CDS  gene_syn F12M16.28, F12M16_28  go_component plasma membrane|GO:0005886|17317660|IDA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ATPase, coupled to transmembrane movement of substances  note ATPase, coupled to transmembrane movement of substances; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: ATPase, coupled to transmembrane movement of substances (TAIR:AT5G60740.1); Has 207641 Blast hits to 191352 proteins in 2533 species: Archae - 3836; Bacteria - 145211; Metazoa - 8180; Fungi - 4194; Plants - 2670; Viruses - 13; Other Eukaryotes - 43537 (source: NCBI BLink).  protein_id AT1G53390.1p  transcript_id AT1G53390.1  protein_id AT1G53390.1p  transcript_id AT1G53390.1  
At1g53400	chr1:019925009	0.0	W/19925009-19925045,19925592-19925714,19926137-19926256,19926336-19926400	AT1G53400.1  CDS  gene_syn F12M16.29, F12M16_29  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45740.1); Has 229 Blast hits to 229 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 40; Plants - 47; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G53400.1p  transcript_id AT1G53400.1  protein_id AT1G53400.1p  transcript_id AT1G53400.1  
At1g53410	chr1:019925839	0.0	C/19925839-19925910	AT1G53410.1  tRNA  gene_syn 52273.TRNA-CYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Cys (anticodon: GCA)  transcript_id AT1G53410.1  
At1g53420	chr1:019931401	0.0	C/19931401-19931494,19931209-19931317,19930984-19931055,19930826-19930894,19930680-19930751,19930516-19930587,19930369-19930440,19930196-19930267,19930040-19930111,19929876-19929947,19929715-19929786,19929557-19929628,19929416-19929481,19929248-19929310,19929115-19929149,19928650-19929026,19928366-19928561,19928130-19928273,19927919-19928037,19927614-19927824,19927298-19927535,19927049-19927199,19926626-19926967	AT1G53420.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product serine/threonine protein kinase-related  note serine/threonine protein kinase-related; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / protein kinase family protein (TAIR:AT3G14840.2); Has 127776 Blast hits to 94755 proteins in 3369 species: Archae - 71; Bacteria - 9502; Metazoa - 44656; Fungi - 7304; Plants - 48255; Viruses - 427; Other Eukaryotes - 17561 (source: NCBI BLink).  protein_id AT1G53420.1p  transcript_id AT1G53420.1  protein_id AT1G53420.1p  transcript_id AT1G53420.1  
At1g53430	chr1:019935298	0.0	W/19935298-19935403,19936182-19936359,19936458-19936529,19936625-19936693,19936783-19936854,19936932-19937003,19937088-19937159,19937242-19937313,19937391-19937462,19937538-19937612,19937712-19937759,19937838-19937909,19937984-19938049,19938141-19938200,19938285-19938323,19938413-19938462,19938573-19938943,19939011-19939209,19939301-19939444,19939540-19939661,19939739-19939949,19940030-19940267,19940347-19940959	AT1G53430.1  CDS  gene_syn T3F20.25, T3F20_25  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat family protein / protein kinase family protein  note leucine-rich repeat family protein / protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / protein kinase family protein (TAIR:AT1G53440.1); Has 130100 Blast hits to 97847 proteins in 3450 species: Archae - 71; Bacteria - 9549; Metazoa - 46779; Fungi - 7405; Plants - 47871; Viruses - 433; Other Eukaryotes - 17992 (source: NCBI BLink).  protein_id AT1G53430.1p  transcript_id AT1G53430.1  protein_id AT1G53430.1p  transcript_id AT1G53430.1  
At1g53430	chr1:019936073	0.0	W/19936073-19936079,19936182-19936359,19936458-19936529,19936625-19936693,19936783-19936854,19936932-19937003,19937088-19937159,19937242-19937313,19937391-19937462,19937538-19937612,19937712-19937759,19937838-19937909,19937984-19938049,19938141-19938200,19938285-19938323,19938413-19938462,19938573-19938943,19939011-19939209,19939301-19939444,19939540-19939661,19939739-19939949,19940030-19940267,19940347-19940959	AT1G53430.2  CDS  gene_syn T3F20.25, T3F20_25  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat family protein / protein kinase family protein  note leucine-rich repeat family protein / protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / protein kinase family protein (TAIR:AT1G53440.1); Has 130683 Blast hits to 98431 proteins in 3454 species: Archae - 69; Bacteria - 9698; Metazoa - 47007; Fungi - 7493; Plants - 47871; Viruses - 433; Other Eukaryotes - 18112 (source: NCBI BLink).  protein_id AT1G53430.2p  transcript_id AT1G53430.2  protein_id AT1G53430.2p  transcript_id AT1G53430.2  
At1g53440	chr1:019945959	0.0	W/19945959-19946058,19946805-19946982,19947061-19947132,19947247-19947315,19947415-19947486,19947563-19947634,19947727-19947798,19947872-19947943,19948011-19948082,19948157-19948228,19948329-19948403,19948493-19948564,19948634-19948699,19948781-19948840,19948931-19948969,19949048-19949097,19949178-19949548,19949629-19949827,19949917-19950060,19950148-19950269,19950348-19950558,19950636-19950873,19950953-19951562	AT1G53440.1  CDS  gene_syn T3F20.24, T3F20_24  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat family protein / protein kinase family protein  note leucine-rich repeat family protein / protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / protein kinase family protein (TAIR:AT1G53430.1); Has 129476 Blast hits to 97341 proteins in 3437 species: Archae - 64; Bacteria - 10168; Metazoa - 45651; Fungi - 7364; Plants - 47925; Viruses - 428; Other Eukaryotes - 17876 (source: NCBI BLink).  protein_id AT1G53440.1p  transcript_id AT1G53440.1  protein_id AT1G53440.1p  transcript_id AT1G53440.1  
At1g53450	chr1:019953339	0.0	C/19953339-19953839,19952808-19953047,19952621-19952710,19952362-19952511,19952156-19952280,19951953-19952082,19951747-19951872	AT1G53450.1  CDS  gene_syn T3F20.23, T3F20_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14830.2); Has 39 Blast hits to 38 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G53450.1p  transcript_id AT1G53450.1  protein_id AT1G53450.1p  transcript_id AT1G53450.1  
At1g53450	chr1:019953339	0.0	C/19953339-19953839,19952808-19953047,19952621-19952710,19952362-19952511,19952156-19952280,19951953-19952082,19951747-19951872	AT1G53450.2  CDS  gene_syn T3F20.23, T3F20_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14830.2); Has 39 Blast hits to 38 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G53450.2p  transcript_id AT1G53450.2  protein_id AT1G53450.2p  transcript_id AT1G53450.2  
At1g53460	chr1:019955914	0.0	C/19955914-19956509,19954876-19954993,19954558-19954788	AT1G53460.1  CDS  gene_syn T3F20.22, T3F20_22  product unknown protein  note unknown protein; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; Has 448 Blast hits to 373 proteins in 72 species: Archae - 10; Bacteria - 15; Metazoa - 142; Fungi - 20; Plants - 53; Viruses - 2; Other Eukaryotes - 206 (source: NCBI BLink).  protein_id AT1G53460.1p  transcript_id AT1G53460.1  protein_id AT1G53460.1p  transcript_id AT1G53460.1  
At1g53470	chr1:019958587	0.0	W/19958587-19960310,19960400-19960523,19960604-19960897,19960992-19961194,19961278-19961578	AT1G53470.1  CDS  gene_syn MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 4, MSL4, T3F20.21, T3F20_21  gene MSL4  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020||ISS  product MSL4 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 4)  note MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 4 (MSL4); LOCATED IN: plasma membrane, membrane; CONTAINS InterPro DOMAIN/s: Membrane protein, At2g17000, predicted (InterPro:IPR016688), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: MSL5 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 5) (TAIR:AT3G14810.1); Has 2103 Blast hits to 2093 proteins in 648 species: Archae - 90; Bacteria - 1483; Metazoa - 0; Fungi - 125; Plants - 92; Viruses - 0; Other Eukaryotes - 313 (source: NCBI BLink).  protein_id AT1G53470.1p  transcript_id AT1G53470.1  protein_id AT1G53470.1p  transcript_id AT1G53470.1  
At1g53480	chr1:019964605	0.0	C/19964605-19964712,19963476-19963949	AT1G53480.1  CDS  gene_syn F22G10.14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G03090.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G53480.1p  transcript_id AT1G53480.1  protein_id AT1G53480.1p  transcript_id AT1G53480.1  
At1g53490	chr1:019965146	0.0	W/19965146-19965215,19965298-19965370,19965455-19965500,19965605-19965635,19965826-19966081,19966174-19966343,19966449-19966710,19966805-19966811	AT1G53490.1  CDS  gene_syn F22G10.16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); Has 121 Blast hits to 119 proteins in 56 species: Archae - 2; Bacteria - 14; Metazoa - 52; Fungi - 14; Plants - 16; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G53490.1p  transcript_id AT1G53490.1  protein_id AT1G53490.1p  transcript_id AT1G53490.1  
At1g53500	chr1:019967680	0.0	C/19967680-19969239,19967157-19967600	AT1G53500.1  CDS  gene_syn ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ATMUM4, ATRHM2, F22G10.13, MUCILAGE-MODIFIED 4, MUM4, RHAMNOSE BIOSYNTHESIS 2, RHM2  gene MUM4  function encodes a putative NDP-L-rhamnose synthase, an enzyme required for the synthesis of the pectin rhamnogalacturonan I, the major component of Arabidopsis mucilage. Gene is involved in seed coat mucilage cell development. Mutant analyses suggest that MUM4 is required for complete mucilage synthesis, cytoplasmic rearrangement and seed coat development.  go_component soluble fraction|GO:0005625|17190829|IDA  go_process metabolic process|GO:0008152||ISS  go_process mucilage biosynthetic process|GO:0010192|11706181|IMP  go_process seed coat development|GO:0010214|14671019|IMP  go_process UDP-rhamnose biosynthetic process|GO:0010253|17190829|IDA  go_function catalytic activity|GO:0003824||ISS  go_function UDP-L-rhamnose synthase activity|GO:0010280|14701918|ISS  go_function UDP-L-rhamnose synthase activity|GO:0010280|17190829|IDA  go_function UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity|GO:0010489|17190829|TAS  go_function UDP-4-keto-rhamnose-4-keto-reductase activity|GO:0010490|17190829|TAS  go_function UDP-glucose 4,6-dehydratase activity|GO:0050377|17190829|IDA  product MUM4 (MUCILAGE-MODIFIED 4); UDP-4-keto-6-deoxy-glucose-3,5-epimerase/ UDP-4-keto-rhamnose-4-keto-reductase/ UDP-L-rhamnose synthase/ UDP-glucose 4,6-dehydratase/ catalytic  note MUCILAGE-MODIFIED 4 (MUM4); FUNCTIONS IN: UDP-4-keto-rhamnose-4-keto-reductase activity, UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity, UDP-L-rhamnose synthase activity, UDP-glucose 4,6-dehydratase activity, catalytic activity; INVOLVED IN: seed coat development, UDP-rhamnose biosynthetic process, mucilage biosynthetic process, metabolic process; LOCATED IN: soluble fraction; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: RHM3 (RHAMNOSE BIOSYNTHESIS 3); UDP-L-rhamnose synthase/ catalytic (TAIR:AT3G14790.1); Has 38694 Blast hits to 38576 proteins in 1765 species: Archae - 549; Bacteria - 17382; Metazoa - 992; Fungi - 358; Plants - 875; Viruses - 96; Other Eukaryotes - 18442 (source: NCBI BLink).  protein_id AT1G53500.1p  transcript_id AT1G53500.1  protein_id AT1G53500.1p  transcript_id AT1G53500.1  
At1g53510	chr1:019974135	0.0	C/19974135-19974158,19973518-19973926,19973294-19973421,19973144-19973203,19972658-19972807,19972414-19972569,19972083-19972294,19971847-19971948,19971465-19971640,19970961-19971391	AT1G53510.1  CDS  gene_syn ATMPK18, F22G10.12  gene ATMPK18  function member of MAP Kinase  go_process signal transduction|GO:0007165|12119167|IC  go_function MAP kinase activity|GO:0004707|11544109|ISS  go_function MAP kinase activity|GO:0004707|12119167|ISS  product ATMPK18; MAP kinase  note ATMPK18; FUNCTIONS IN: MAP kinase activity; INVOLVED IN: signal transduction; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATMPK19; MAP kinase (TAIR:AT3G14720.1); Has 87926 Blast hits to 86950 proteins in 2905 species: Archae - 49; Bacteria - 7665; Metazoa - 38224; Fungi - 7983; Plants - 16794; Viruses - 524; Other Eukaryotes - 16687 (source: NCBI BLink).  protein_id AT1G53510.1p  transcript_id AT1G53510.1  protein_id AT1G53510.1p  transcript_id AT1G53510.1  
At1g53520	chr1:019977687	0.0	C/19977687-19977915,19977351-19977455,19977032-19977187,19976728-19976942,19976485-19976643	AT1G53520.1  CDS  gene_syn F22G10.11  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process flavonoid biosynthetic process|GO:0009813||IEA  go_function chalcone isomerase activity|GO:0045430||IEA  product chalcone-flavanone isomerase-related  note chalcone-flavanone isomerase-related; FUNCTIONS IN: chalcone isomerase activity; INVOLVED IN: flavonoid biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone isomerase, subgroup (InterPro:IPR003466), Chalcone isomerase, 3-layer sandwich (InterPro:IPR016088), Chalcone isomerase (InterPro:IPR016087); Has 294 Blast hits to 294 proteins in 53 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 2; Plants - 284; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G53520.1p  transcript_id AT1G53520.1  protein_id AT1G53520.1p  transcript_id AT1G53520.1  
At1g53530	chr1:019978249	0.0	W/19978249-19978383,19978473-19978697,19979544-19979654,19979743-19979778	AT1G53530.1  CDS  gene_syn F22G10.30  go_component membrane|GO:0016020||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type peptidase activity|GO:0008236||IEA  go_component membrane|GO:0016020||ISS  go_process proteolysis|GO:0006508||ISS  go_function peptidase activity|GO:0008233||ISS  product signal peptidase I family protein  note signal peptidase I family protein; FUNCTIONS IN: serine-type peptidase activity, peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S24, S26A and S26B, C-terminal (InterPro:IPR011056), Peptidase S24, S26A, S26B and S26C (InterPro:IPR015927), Peptidase S26A, signal peptidase I (InterPro:IPR000223), Peptidase S26A (InterPro:IPR014037); BEST Arabidopsis thaliana protein match is: peptidase/ serine-type peptidase (TAIR:AT1G29960.1); Has 2691 Blast hits to 2685 proteins in 791 species: Archae - 0; Bacteria - 1781; Metazoa - 213; Fungi - 148; Plants - 137; Viruses - 0; Other Eukaryotes - 412 (source: NCBI BLink).  protein_id AT1G53530.1p  transcript_id AT1G53530.1  protein_id AT1G53530.1p  transcript_id AT1G53530.1  
At1g53530	chr1:019978488	0.0	W/19978488-19978697,19979544-19979654,19979743-19979778	AT1G53530.2  CDS  gene_syn F22G10.30  go_component membrane|GO:0016020||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type peptidase activity|GO:0008236||IEA  go_component membrane|GO:0016020||ISS  go_process proteolysis|GO:0006508||ISS  go_function peptidase activity|GO:0008233||ISS  product signal peptidase I family protein  note signal peptidase I family protein; FUNCTIONS IN: serine-type peptidase activity, peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S24, S26A and S26B, C-terminal (InterPro:IPR011056), Peptidase S24, S26A, S26B and S26C (InterPro:IPR015927), Peptidase S26A, signal peptidase I (InterPro:IPR000223), Peptidase S26A (InterPro:IPR014037); BEST Arabidopsis thaliana protein match is: peptidase/ serine-type peptidase (TAIR:AT1G29960.1); Has 1811 Blast hits to 1806 proteins in 517 species: Archae - 0; Bacteria - 974; Metazoa - 213; Fungi - 145; Plants - 129; Viruses - 0; Other Eukaryotes - 350 (source: NCBI BLink).  protein_id AT1G53530.2p  transcript_id AT1G53530.2  protein_id AT1G53530.2p  transcript_id AT1G53530.2  
At1g53540	chr1:019980510	0.0	W/19980510-19980983	AT1G53540.1  CDS  gene_syn F22G10.20  go_component cellular_component|GO:0005575||ND  go_process response to heat|GO:0009408||ISS  product 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)  note 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156); INVOLVED IN: response to heat; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: ATHSP17.4 (TAIR:AT3G46230.1); Has 4393 Blast hits to 4393 proteins in 957 species: Archae - 105; Bacteria - 2455; Metazoa - 47; Fungi - 215; Plants - 986; Viruses - 0; Other Eukaryotes - 585 (source: NCBI BLink).  protein_id AT1G53540.1p  transcript_id AT1G53540.1  protein_id AT1G53540.1p  transcript_id AT1G53540.1  
At1g53541	chr1:019981385	0.0	C/19981385-19981495	AT1G53541.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G53541.1p  transcript_id AT1G53541.1  protein_id AT1G53541.1p  transcript_id AT1G53541.1  
At1g53542	chr1:019981628	0.0	W/19981628-19981813	AT1G53542.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G53542.1p  transcript_id AT1G53542.1  protein_id AT1G53542.1p  transcript_id AT1G53542.1  
At1g53543	chr1:019981969	0.0	W/19981969-19982124	AT1G53543.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G53543.1p  transcript_id AT1G53543.1  protein_id AT1G53543.1p  transcript_id AT1G53543.1  
At1g53550	chr1:019983411	0.0	W/19983411-19984637	AT1G53550.1  CDS  gene_syn F22G10.29  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G55070.1); Has 615 Blast hits to 592 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 615; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G53550.1p  transcript_id AT1G53550.1  protein_id AT1G53550.1p  transcript_id AT1G53550.1  
At1g53560	chr1:019985753	0.0	C/19985753-19985960,19985257-19985332,19985054-19985168,19984908-19984970	AT1G53560.1  CDS  gene_syn F22G10.10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17080.1); Has 80 Blast hits to 80 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G53560.1p  transcript_id AT1G53560.1  protein_id AT1G53560.1p  transcript_id AT1G53560.1  
At1g53570	chr1:019987391	0.0	W/19987391-19987746,19987882-19988226,19988790-19988877,19988954-19989016,19989143-19989303,19989390-19989465,19989615-19989674,19989793-19989900,19990005-19990235,19990315-19990400,19990478-19990733	AT1G53570.1  CDS  gene_syn F22G10.18, MAP KINASE KINASE KINASE 3, MAP3KA, MAPKKK3, MEK KINASE  gene MAP3KA  function MEK kinase (MAP3Ka)  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product MAP3KA; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note MAP3KA; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitogen activated protein kinase kinase kinase 3 (InterPro:IPR015748), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: YDA (YODA); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT1G63700.1); Has 97560 Blast hits to 95894 proteins in 3525 species: Archae - 75; Bacteria - 8375; Metazoa - 43216; Fungi - 8645; Plants - 18632; Viruses - 516; Other Eukaryotes - 18101 (source: NCBI BLink).  protein_id AT1G53570.1p  transcript_id AT1G53570.1  protein_id AT1G53570.1p  transcript_id AT1G53570.1  
At1g53570	chr1:019987391	0.0	W/19987391-19987746,19987882-19988226,19988790-19988877,19988954-19989016,19989143-19989303,19989390-19989465,19989615-19989674,19989793-19989900,19990005-19990235,19990318-19990400,19990478-19990733	AT1G53570.2  CDS  gene_syn F22G10.18, MAP KINASE KINASE KINASE 3, MAP3KA, MAPKKK3, MEK KINASE  gene MAP3KA  function MEK kinase (MAP3Ka)  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product MAP3KA; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note MAP3KA; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitogen activated protein kinase kinase kinase 3 (InterPro:IPR015748), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: YDA (YODA); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT1G63700.1); Has 97598 Blast hits to 95932 proteins in 3526 species: Archae - 75; Bacteria - 8381; Metazoa - 43239; Fungi - 8647; Plants - 18631; Viruses - 516; Other Eukaryotes - 18109 (source: NCBI BLink).  protein_id AT1G53570.2p  transcript_id AT1G53570.2  protein_id AT1G53570.2p  transcript_id AT1G53570.2  
At1g53570	chr1:019987391	0.0	W/19987391-19987746,19987882-19988226,19988790-19988877,19988954-19989016,19989143-19989303,19989390-19989465,19989615-19989674,19989793-19989900,19990005-19990235,19990318-19990400,19990478-19990733	AT1G53570.3  CDS  gene_syn F22G10.18, MAP KINASE KINASE KINASE 3, MAP3KA, MAPKKK3, MEK KINASE  gene MAP3KA  function MEK kinase (MAP3Ka)  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product MAP3KA; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note MAP3KA; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitogen activated protein kinase kinase kinase 3 (InterPro:IPR015748), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: YDA (YODA); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT1G63700.1); Has 97598 Blast hits to 95932 proteins in 3526 species: Archae - 75; Bacteria - 8381; Metazoa - 43239; Fungi - 8647; Plants - 18631; Viruses - 516; Other Eukaryotes - 18109 (source: NCBI BLink).  protein_id AT1G53570.3p  transcript_id AT1G53570.3  protein_id AT1G53570.3p  transcript_id AT1G53570.3  
At1g53580	chr1:019993011	0.0	C/19993011-19993250,19992666-19992794,19992463-19992570,19992256-19992390,19992025-19992066,19991879-19991943,19991709-19991782,19991542-19991633	AT1G53580.2  CDS  gene_syn ETHE1, ETHE1-LIKE, F22G10.9, GLX2-3, GLY3, GLYOXALASE 2-3, GLYOXALASE II 3, T3F20.11, T3F20_11  gene GLY3  go_process response to salt stress|GO:0009651|17916636|IEP  go_function hydrolase activity|GO:0016787||IEA  go_process methylglyoxal catabolic process to D-lactate|GO:0019243||ISS  go_function hydroxyacylglutathione hydrolase activity|GO:0004416||ISS  product GLY3 (GLYOXALASE II 3); hydrolase/ hydroxyacylglutathione hydrolase  note GLYOXALASE II 3 (GLY3); FUNCTIONS IN: hydrolase activity, hydroxyacylglutathione hydrolase activity; INVOLVED IN: response to salt stress, methylglyoxal catabolic process to D-lactate; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279); BEST Arabidopsis thaliana protein match is: GLY2; hydroxyacylglutathione hydrolase (TAIR:AT3G10850.1); Has 9131 Blast hits to 9129 proteins in 1362 species: Archae - 152; Bacteria - 4880; Metazoa - 352; Fungi - 149; Plants - 113; Viruses - 0; Other Eukaryotes - 3485 (source: NCBI BLink).  protein_id AT1G53580.2p  transcript_id AT1G53580.2  protein_id AT1G53580.2p  transcript_id AT1G53580.2  
At1g53580	chr1:019993011	0.0	C/19993011-19993250,19992666-19992794,19992463-19992570,19992256-19992390,19992025-19992066,19991884-19991943,19991709-19991787,19991542-19991633	AT1G53580.1  CDS  gene_syn ETHE1, ETHE1-LIKE, F22G10.9, GLX2-3, GLY3, GLYOXALASE 2-3, GLYOXALASE II 3, T3F20.11, T3F20_11  gene GLY3  go_process response to salt stress|GO:0009651|17916636|IEP  go_function hydrolase activity|GO:0016787||IEA  go_process methylglyoxal catabolic process to D-lactate|GO:0019243||ISS  go_function hydroxyacylglutathione hydrolase activity|GO:0004416||ISS  product GLY3 (GLYOXALASE II 3); hydrolase/ hydroxyacylglutathione hydrolase  note GLYOXALASE II 3 (GLY3); FUNCTIONS IN: hydrolase activity, hydroxyacylglutathione hydrolase activity; INVOLVED IN: response to salt stress, methylglyoxal catabolic process to D-lactate; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279); BEST Arabidopsis thaliana protein match is: GLY2; hydroxyacylglutathione hydrolase (TAIR:AT3G10850.1); Has 9146 Blast hits to 9144 proteins in 1362 species: Archae - 152; Bacteria - 4883; Metazoa - 352; Fungi - 149; Plants - 113; Viruses - 0; Other Eukaryotes - 3497 (source: NCBI BLink).  protein_id AT1G53580.1p  transcript_id AT1G53580.1  protein_id AT1G53580.1p  transcript_id AT1G53580.1  
At1g53590	chr1:019996556	0.0	W/19996556-19996672,19996762-19996836,19997204-19997347,19997446-19997541,19997628-19997759,19997837-19997989,19998104-19998145,19998278-19998326,19998446-19998538,19998614-19998797,19998881-19999004,19999081-20000127	AT1G53590.1  CDS  gene_syn F22G10.28, NTMC2T6.1, NTMC2TYPE6.1  gene NTMC2T6.1  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  product NTMC2T6.1  note NTMC2T6.1; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14590.2); Has 4658 Blast hits to 3860 proteins in 257 species: Archae - 0; Bacteria - 64; Metazoa - 2751; Fungi - 514; Plants - 693; Viruses - 7; Other Eukaryotes - 629 (source: NCBI BLink).  protein_id AT1G53590.1p  transcript_id AT1G53590.1  protein_id AT1G53590.1p  transcript_id AT1G53590.1  
At1g53600	chr1:020001263	0.0	W/20001263-20003372,20004731-20005066,20005722-20005795	AT1G53600.1  CDS  gene_syn F22G10.27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G02750.1); Has 43782 Blast hits to 13148 proteins in 894 species: Archae - 15; Bacteria - 6391; Metazoa - 9824; Fungi - 1255; Plants - 22710; Viruses - 556; Other Eukaryotes - 3031 (source: NCBI BLink).  protein_id AT1G53600.1p  transcript_id AT1G53600.1  protein_id AT1G53600.1p  transcript_id AT1G53600.1  
At1g53610	chr1:020009120	0.0	C/20009120-20009320,20008996-20009079	AT1G53610.1  CDS  gene_syn F22G10.6  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53620.1); Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G53610.1p  transcript_id AT1G53610.1  protein_id AT1G53610.1p  transcript_id AT1G53610.1  
At1g53620	chr1:020011602	0.0	C/20011602-20011907	AT1G53620.1  CDS  gene_syn F22G10.5  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53610.1); Has 5418 Blast hits to 2090 proteins in 300 species: Archae - 0; Bacteria - 1374; Metazoa - 2188; Fungi - 175; Plants - 1090; Viruses - 68; Other Eukaryotes - 523 (source: NCBI BLink).  protein_id AT1G53620.1p  transcript_id AT1G53620.1  protein_id AT1G53620.1p  transcript_id AT1G53620.1  
At1g53625	chr1:020014545	0.0	C/20014545-20014814	AT1G53625.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 29192 Blast hits to 6803 proteins in 621 species: Archae - 23; Bacteria - 6296; Metazoa - 10109; Fungi - 1190; Plants - 7711; Viruses - 570; Other Eukaryotes - 3293 (source: NCBI BLink).  protein_id AT1G53625.1p  transcript_id AT1G53625.1  protein_id AT1G53625.1p  transcript_id AT1G53625.1  
At1g53630	chr1:020016221	0.0	C/20016221-20017332	AT1G53630.1  mRNA_TE_gene  pseudo  gene_syn F22G10.19  note Transposable element gene, pseudogene, hypothetical protein, similar to putative non-LTR retroelement reverse transcriptase GB:AAD17398 GI:4335720 from (Arabidopsis thaliana)  
At1g53633	chr1:020017859	0.0	C/20017859-20017932,20017504-20017765	AT1G53633.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT1G53633.1p  transcript_id AT1G53633.1  protein_id AT1G53633.1p  transcript_id AT1G53633.1  
At1g53635	chr1:020019500	0.0	C/20019500-20019739	AT1G53635.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G53635.1p  transcript_id AT1G53635.1  protein_id AT1G53635.1p  transcript_id AT1G53635.1  
At1g53640	chr1:020025260	0.0	C/20025260-20025461,20024950-20025174,20023655-20023771,20023508-20023605,20020885-20021115	AT1G53640.1  CDS  gene_syn F22G10.8  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; Has 1262 Blast hits to 677 proteins in 85 species: Archae - 0; Bacteria - 49; Metazoa - 791; Fungi - 89; Plants - 260; Viruses - 4; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT1G53640.1p  transcript_id AT1G53640.1  protein_id AT1G53640.1p  transcript_id AT1G53640.1  
At1g53645	chr1:020027433	0.0	C/20027433-20028587,20026905-20027054,20026626-20026811,20026434-20026514	AT1G53645.1  CDS  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 14086 Blast hits to 10901 proteins in 729 species: Archae - 8; Bacteria - 1034; Metazoa - 5759; Fungi - 2428; Plants - 1292; Viruses - 226; Other Eukaryotes - 3339 (source: NCBI BLink).  protein_id AT1G53645.1p  transcript_id AT1G53645.1  protein_id AT1G53645.1p  transcript_id AT1G53645.1  
At1g53650	chr1:020030944	0.0	C/20030944-20031243,20030554-20030667,20030418-20030462,20030268-20030340,20030057-20030169,20029896-20029955,20029768-20029815,20029591-20029659,20029405-20029466,20029262-20029322	AT1G53650.1  CDS  gene_syn CID8, CTC-INTERACTING DOMAIN 8, F22G10.7, F22G10_7  gene CID8  function RNA-binding protein, putative, similar to RNA-binding protein GB:AAA86641 GI:1174153 from (Arabidopsis thaliana).Contains PAB2 domain which facilitates binding to PABC proteins.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  go_function protein binding|GO:0005515|15650869|IPI  product CID8 (CTC-INTERACTING DOMAIN 8); RNA binding / protein binding  note CTC-INTERACTING DOMAIN 8 (CID8); FUNCTIONS IN: protein binding, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CID9 (CTC-Interacting Domain 9); RNA binding / protein binding (TAIR:AT3G14450.1); Has 3567 Blast hits to 2830 proteins in 235 species: Archae - 0; Bacteria - 0; Metazoa - 2277; Fungi - 385; Plants - 597; Viruses - 0; Other Eukaryotes - 308 (source: NCBI BLink).  protein_id AT1G53650.1p  transcript_id AT1G53650.1  protein_id AT1G53650.1p  transcript_id AT1G53650.1  
At1g53650	chr1:020030962	0.0	C/20030962-20031243,20030554-20030667,20030418-20030462,20030268-20030340,20030057-20030169,20029896-20029955,20029768-20029815,20029591-20029659,20029405-20029466,20029262-20029322	AT1G53650.2  CDS  gene_syn CID8, CTC-INTERACTING DOMAIN 8, F22G10.7, F22G10_7  gene CID8  function RNA-binding protein, putative, similar to RNA-binding protein GB:AAA86641 GI:1174153 from (Arabidopsis thaliana).Contains PAB2 domain which facilitates binding to PABC proteins.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  go_function protein binding|GO:0005515|15650869|IPI  product CID8 (CTC-INTERACTING DOMAIN 8); RNA binding / protein binding  note CTC-INTERACTING DOMAIN 8 (CID8); FUNCTIONS IN: protein binding, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CID9 (CTC-Interacting Domain 9); RNA binding / protein binding (TAIR:AT3G14450.1); Has 3584 Blast hits to 2842 proteins in 236 species: Archae - 0; Bacteria - 0; Metazoa - 2272; Fungi - 400; Plants - 606; Viruses - 0; Other Eukaryotes - 306 (source: NCBI BLink).  protein_id AT1G53650.2p  transcript_id AT1G53650.2  protein_id AT1G53650.2p  transcript_id AT1G53650.2  
At1g53660	chr1:020034032	0.0	W/20034032-20034139,20034530-20034637,20034730-20034764,20034851-20034963,20035040-20035301,20035481-20035740,20035834-20035946	AT1G53660.1  CDS  gene_syn F22G10.26, F22G10_26  go_function organic anion transmembrane transporter activity|GO:0008514||ISS  product organic anion transmembrane transporter  note organic anion transmembrane transporter; FUNCTIONS IN: organic anion transmembrane transporter activity; EXPRESSED IN: inflorescence meristem, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: transporter-related (TAIR:AT3G14410.1); Has 1342 Blast hits to 1341 proteins in 185 species: Archae - 2; Bacteria - 24; Metazoa - 367; Fungi - 229; Plants - 591; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).  protein_id AT1G53660.1p  transcript_id AT1G53660.1  protein_id AT1G53660.1p  transcript_id AT1G53660.1  
At1g53670	chr1:020036687	0.0	W/20036687-20036876,20037238-20037349,20037462-20037527,20037642-20037839,20038032-20038074	AT1G53670.1  CDS  gene_syn F22G10.17, F22G10_17, MSRB1, methionine sulfoxide reductase B 1  gene MSRB1  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function peptide-methionine-(S)-S-oxide reductase activity|GO:0008113||IEA  go_process response to oxidative stress|GO:0006979|15923321|IEP  product MSRB1 (methionine sulfoxide reductase B 1); peptide-methionine-(S)-S-oxide reductase  note methionine sulfoxide reductase B 1 (MSRB1); FUNCTIONS IN: peptide-methionine-(S)-S-oxide reductase activity; INVOLVED IN: response to oxidative stress, N-terminal protein myristoylation; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methionine sulphoxide reductase B (InterPro:IPR002579), Mss4-like (InterPro:IPR011057); BEST Arabidopsis thaliana protein match is: methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein (TAIR:AT4G04830.1); Has 5981 Blast hits to 5978 proteins in 1232 species: Archae - 55; Bacteria - 2690; Metazoa - 223; Fungi - 85; Plants - 107; Viruses - 1; Other Eukaryotes - 2820 (source: NCBI BLink).  protein_id AT1G53670.1p  transcript_id AT1G53670.1  protein_id AT1G53670.1p  transcript_id AT1G53670.1  
At1g53670	chr1:020036687	0.0	W/20036687-20036876,20037238-20037349,20037462-20037527,20037663-20037839,20038032-20038074	AT1G53670.2  CDS  gene_syn F22G10.17, F22G10_17, MSRB1, methionine sulfoxide reductase B 1  gene MSRB1  go_component chloroplast|GO:0009507|18431481|IDA  go_function peptide-methionine-(S)-S-oxide reductase activity|GO:0008113||IEA  go_process response to oxidative stress|GO:0006979|15923321|IEP  product MSRB1 (methionine sulfoxide reductase B 1); peptide-methionine-(S)-S-oxide reductase  note methionine sulfoxide reductase B 1 (MSRB1); FUNCTIONS IN: peptide-methionine-(S)-S-oxide reductase activity; INVOLVED IN: response to oxidative stress; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methionine sulphoxide reductase B (InterPro:IPR002579), Mss4-like (InterPro:IPR011057); BEST Arabidopsis thaliana protein match is: methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein (TAIR:AT4G04830.1); Has 5888 Blast hits to 5875 proteins in 1232 species: Archae - 53; Bacteria - 2695; Metazoa - 180; Fungi - 85; Plants - 107; Viruses - 1; Other Eukaryotes - 2767 (source: NCBI BLink).  protein_id AT1G53670.2p  transcript_id AT1G53670.2  protein_id AT1G53670.2p  transcript_id AT1G53670.2  
At1g53680	chr1:020038358	0.0	W/20038358-20038681,20038767-20039117	AT1G53680.1  CDS  gene_syn ATGSTU28, F22G10.22, F22G10_22, GLUTATHIONE S-TRANSFERASE TAU 28  gene ATGSTU28  function Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTU28 (GLUTATHIONE S-TRANSFERASE TAU 28); glutathione transferase  note GLUTATHIONE S-TRANSFERASE TAU 28 (ATGSTU28); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: response to cadmium ion, toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTU25 (GLUTATHIONE S-TRANSFERASE TAU 25); glutathione transferase (TAIR:AT1G17180.1); Has 4180 Blast hits to 4166 proteins in 764 species: Archae - 0; Bacteria - 1945; Metazoa - 404; Fungi - 96; Plants - 1073; Viruses - 0; Other Eukaryotes - 662 (source: NCBI BLink).  protein_id AT1G53680.1p  transcript_id AT1G53680.1  protein_id AT1G53680.1p  transcript_id AT1G53680.1  
At1g53683	chr1:020039463	0.0	C/20039463-20039616	AT1G53683.1  miRNA  gene_syn MICRORNA169D, MIR169D  gene MIR169D  function Encodes a microRNA that targets several HAP2 family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGAGCCAAGGAUGACUUGCCG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR169D (MICRORNA169D); miRNA  transcript_id AT1G53683.1  
At1g53687	chr1:020041518	0.0	W/20041518-20041734	AT1G53687.1  miRNA  gene_syn MICRORNA169E, MIR169E  gene MIR169E  function Encodes a microRNA that targets several HAP2 family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGAGCCAAGGAUGACUUGCCG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR169E (MICRORNA169E); miRNA  transcript_id AT1G53687.1  
At1g53690	chr1:020043278	0.0	C/20043278-20043344,20042839-20042952,20042699-20042703	AT1G53690.1  CDS  gene_syn F22G10.4, F22G10_4  function Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.  go_process transcription|GO:0006350||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_component nucleus|GO:0005634||ISS  go_process transcription|GO:0006350||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product DNA-directed RNA polymerases I, II, and III 7 kDa subunit, putative  note DNA-directed RNA polymerases I, II, and III 7 kDa subunit, putative; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: sperm cell, leaf whorl; CONTAINS InterPro DOMAIN/s: RNA polymerase Rbp10 (InterPro:IPR006591); BEST Arabidopsis thaliana protein match is: NRPB12; DNA binding / DNA-directed RNA polymerase (TAIR:AT5G41010.1); Has 177 Blast hits to 177 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 90; Fungi - 35; Plants - 28; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT1G53690.1p  transcript_id AT1G53690.1  protein_id AT1G53690.1p  transcript_id AT1G53690.1  
At1g53700	chr1:020048604	0.0	W/20048604-20050034	AT1G53700.1  CDS  gene_syn F22G10.21, F22G10_21, PK3AT, PROTEIN KINASE 3 ARABIDOPSIS THALIANA, WAG 1, WAG1  gene WAG1  function The WAG1 and its homolog, WAG2 each encodes a protein-serine/threonine kinase that are nearly 70% identical to PsPK3 protein. All three together with CsPK3 belong to PsPK3-type kinases. At the N-terminus, all four possess a serine/threonine-rich domain. They are closely related to Arabidopsis kinases PINOID. wag1/wag2 double mutants exhibit a pronounced wavy root phenotype when grown vertically on agar plates (while wild-type plants develop wavy roots only on plates inclined to angles less than 90 degrees), indicating an overlapping role for WAG1 and WAG2 as suppressors of root waving. Simultaneous disruption of PID(AT2G34650) and its 3 closest homologs (PID2/AT2G26700, WAG1/AT1G53700, and WAG2/AT3G14370) abolishes the formation of cotyledons.  go_component cellular_component|GO:0005575||ND  go_process gravitropism|GO:0009630|16460509|IMP  go_process auxin polar transport|GO:0009926|16460509|IMP  go_process root development|GO:0048364|16460509|IGI  go_process cotyledon development|GO:0048825|19075219|IGI  go_function protein serine/threonine kinase activity|GO:0004674|16460509|ISS  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product WAG1 (WAG 1); kinase/ protein serine/threonine kinase  note WAG 1 (WAG1); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity; INVOLVED IN: gravitropism, cotyledon development, root development, auxin polar transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, embryo development stages, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: WAG2; kinase/ protein serine/threonine kinase (TAIR:AT3G14370.1); Has 71392 Blast hits to 70613 proteins in 1740 species: Archae - 24; Bacteria - 6536; Metazoa - 31040; Fungi - 7564; Plants - 11525; Viruses - 359; Other Eukaryotes - 14344 (source: NCBI BLink).  protein_id AT1G53700.1p  transcript_id AT1G53700.1  protein_id AT1G53700.1p  transcript_id AT1G53700.1  
At1g53705	chr1:020051201	0.0	C/20051201-20051451,20051043-20051106,20050739-20050749,20050595-20050637,20050475-20050501	AT1G53705.1  CDS  go_component cytoplasm|GO:0005737||IEA  go_component endomembrane system|GO:0012505||IEA  go_process translation|GO:0006412||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function ATP binding|GO:0005524||IEA  product ATP binding / aminoacyl-tRNA ligase/ nucleotide binding  note ATP binding / aminoacyl-tRNA ligase/ nucleotide binding; FUNCTIONS IN: aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: translation, tRNA aminoacylation for protein translation; LOCATED IN: endomembrane system, cytoplasm; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (D, K and N)-like (InterPro:IPR018150); BEST Arabidopsis thaliana protein match is: ATP binding / aminoacyl-tRNA ligase/ aspartic-type endopeptidase/ nucleotide binding (TAIR:AT3G29750.1); Has 16 Blast hits to 16 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G53705.1p  transcript_id AT1G53705.1  protein_id AT1G53705.1p  transcript_id AT1G53705.1  
At1g53708	chr1:020052530	0.0	W/20052530-20052676	AT1G53708.1  CDS  gene_syn ROTUNDIFOLIA LIKE 9, RTFL9  gene RTFL9  product RTFL9 (ROTUNDIFOLIA LIKE 9)  note ROTUNDIFOLIA LIKE 9 (RTFL9); CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); BEST Arabidopsis thaliana protein match is: RTFL10 (ROTUNDIFOLIA LIKE 10) (TAIR:AT3G14362.1); Has 63 Blast hits to 63 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G53708.1p  transcript_id AT1G53708.1  protein_id AT1G53708.1p  transcript_id AT1G53708.1  
At1g53710	chr1:020056149	0.0	C/20056149-20056271,20055775-20055834,20055501-20055679,20055277-20055415,20055098-20055194,20054929-20054988,20054745-20054845,20054629-20054663,20054453-20054510,20054249-20054323,20054012-20054169,20053662-20053923	AT1G53710.2  CDS  gene_syn F22G10.25, F22G10_25  go_component endomembrane system|GO:0012505||IEA  go_function hydrolase activity|GO:0016787||IEA  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product hydrolase/ protein serine/threonine phosphatase  note hydrolase/ protein serine/threonine phosphatase; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); Has 512 Blast hits to 501 proteins in 115 species: Archae - 4; Bacteria - 12; Metazoa - 215; Fungi - 158; Plants - 110; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G53710.2p  transcript_id AT1G53710.2  protein_id AT1G53710.2p  transcript_id AT1G53710.2  
At1g53710	chr1:020056149	0.0	C/20056149-20056271,20055775-20055834,20055501-20055679,20055280-20055415,20055098-20055194,20054929-20054988,20054745-20054845,20054629-20054663,20054453-20054510,20054249-20054323,20054012-20054169,20053666-20053923,20053339-20053585	AT1G53710.1  CDS  gene_syn F22G10.25, F22G10_25  go_component endomembrane system|GO:0012505||IEA  go_function hydrolase activity|GO:0016787||IEA  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product hydrolase/ protein serine/threonine phosphatase  note hydrolase/ protein serine/threonine phosphatase; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); Has 515 Blast hits to 504 proteins in 116 species: Archae - 2; Bacteria - 14; Metazoa - 217; Fungi - 158; Plants - 110; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G53710.1p  transcript_id AT1G53710.1  protein_id AT1G53710.1p  transcript_id AT1G53710.1  
At1g53720	chr1:020057012	0.0	W/20057012-20057109,20057199-20057303,20057474-20057591,20057702-20057752,20057839-20058153,20058237-20058314,20058397-20058443,20058528-20058583,20058678-20058718,20058808-20058913,20059003-20059508	AT1G53720.1  CDS  gene_syn ATCYP59, CYCLOPHILIN 59, CYP59, F22G10.24, F22G10_24  gene CYP59  function Encodes a cyclophilin, member of a family modular proteins consisting of a peptidyl-prolyl cis  trans isomerase (PPIase) domain, followed by an RNA recognition motif (RRM), and a C-terminal domain enriched in charged amino acids. Interacts with with SCL33/SR33 and with a majority of Arabidopsis SR proteins and the largest subunit of RNA polymerase II. Localizes to the nucleus, but it does not significantly colocalize with SR proteins in nuclear speckles.  go_component nucleus|GO:0005634|16497658|IDA  go_function nucleic acid binding|GO:0003676||ISS  go_function RNA binding|GO:0003723|16497658|IDA  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product CYP59 (CYCLOPHILIN 59); RNA binding / nucleic acid binding / peptidyl-prolyl cis-trans isomerase  note CYCLOPHILIN 59 (CYP59); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity, RNA binding, nucleic acid binding; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: ATP binding / ATPase/ hydrolase/ nucleoside-triphosphatase/ nucleotide binding / peptidyl-prolyl cis-trans isomerase (TAIR:AT1G53780.1); Has 53595 Blast hits to 31270 proteins in 1759 species: Archae - 126; Bacteria - 5947; Metazoa - 24585; Fungi - 6231; Plants - 3830; Viruses - 236; Other Eukaryotes - 12640 (source: NCBI BLink).  protein_id AT1G53720.1p  transcript_id AT1G53720.1  protein_id AT1G53720.1p  transcript_id AT1G53720.1  
At1g53730	chr1:020061771	0.0	W/20061771-20061864,20062250-20062382,20062464-20062538,20062636-20062701,20062782-20062853,20062940-20063011,20063084-20063155,20063230-20063295,20063379-20063441,20063517-20063833,20063925-20064211,20064299-20064570,20064656-20064788,20064869-20065002,20065092-20065251,20065329-20065475	AT1G53730.2  CDS  gene_syn F22G10.31, F22G10_31, SRF6, STRUBBELIG-RECEPTOR FAMILY 6  gene SRF6  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product SRF6 (STRUBBELIG-RECEPTOR FAMILY 6); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase  note STRUBBELIG-RECEPTOR FAMILY 6 (SRF6); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: SRF7 (STRUBBELIG-RECEPTOR FAMILY 7); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT3G14350.1); Has 107911 Blast hits to 84979 proteins in 2317 species: Archae - 64; Bacteria - 9020; Metazoa - 40372; Fungi - 5700; Plants - 38429; Viruses - 278; Other Eukaryotes - 14048 (source: NCBI BLink).  protein_id AT1G53730.2p  transcript_id AT1G53730.2  protein_id AT1G53730.2p  transcript_id AT1G53730.2  
At1g53730	chr1:020061771	0.0	W/20061771-20061864,20062250-20062382,20062464-20062538,20062636-20062701,20062782-20062853,20062940-20063011,20063084-20063155,20063230-20063295,20063379-20063441,20063517-20063833,20063925-20064211,20064299-20064570,20064656-20064788,20064869-20065002,20065095-20065251,20065329-20065475	AT1G53730.1  CDS  gene_syn F22G10.31, F22G10_31, SRF6, STRUBBELIG-RECEPTOR FAMILY 6  gene SRF6  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product SRF6 (STRUBBELIG-RECEPTOR FAMILY 6); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note STRUBBELIG-RECEPTOR FAMILY 6 (SRF6); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591); BEST Arabidopsis thaliana protein match is: SRF7 (STRUBBELIG-RECEPTOR FAMILY 7); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT3G14350.1); Has 107844 Blast hits to 84597 proteins in 2319 species: Archae - 64; Bacteria - 8928; Metazoa - 40261; Fungi - 5658; Plants - 38673; Viruses - 282; Other Eukaryotes - 13978 (source: NCBI BLink).  protein_id AT1G53730.1p  transcript_id AT1G53730.1  protein_id AT1G53730.1p  transcript_id AT1G53730.1  
At1g53750	chr1:020068238	0.0	C/20068238-20068324,20067812-20067893,20067631-20067722,20067461-20067538,20067307-20067368,20067035-20067179,20066719-20066937,20066441-20066622,20066168-20066343,20065921-20066078	AT1G53750.1  CDS  gene_syn 26S PROTEASOME ATPASE SUBUNIT, REGULATORY PARTICLE TRIPLE-A 1A, RPT1A, T18A20.1, T18A20_1  gene RPT1A  function 26S proteasome AAA-ATPase subunit RPT1a (RPT1a) mRNA,  go_component plasma membrane|GO:0005886|17317660|IDA  go_component nucleus|GO:0005634|11742986|TAS  go_component proteasome regulatory particle, base subcomplex|GO:0008540|9741626|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_function ATPase activity|GO:0016887|10417703|IGI  go_function ATPase activity|GO:0016887||ISS  product RPT1A (REGULATORY PARTICLE TRIPLE-A 1A); ATPase  note REGULATORY PARTICLE TRIPLE-A 1A (RPT1A); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, nucleus, plasma membrane; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: ATP binding / ATPase/ hydrolase/ nucleoside-triphosphatase/ nucleotide binding / peptidyl-prolyl cis-trans isomerase (TAIR:AT1G53780.1); Has 21240 Blast hits to 19729 proteins in 1737 species: Archae - 849; Bacteria - 5774; Metazoa - 4082; Fungi - 2301; Plants - 1645; Viruses - 20; Other Eukaryotes - 6569 (source: NCBI BLink).  protein_id AT1G53750.1p  transcript_id AT1G53750.1  protein_id AT1G53750.1p  transcript_id AT1G53750.1  
At1g53760	chr1:020070724	0.0	C/20070724-20070918,20070343-20070407,20070140-20070238,20069955-20070002,20069768-20069837,20069595-20069666,20069386-20069514,20069159-20069299	AT1G53760.1  CDS  gene_syn T18A20.23, T18A20_23  go_component mitochondrion|GO:0005739|15276431|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane, plastid, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2343 (InterPro:IPR018786); Has 100 Blast hits to 100 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 78; Plants - 20; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G53760.1p  transcript_id AT1G53760.1  protein_id AT1G53760.1p  transcript_id AT1G53760.1  
At1g53770	chr1:020072444	0.0	C/20072444-20073708,20071719-20071968,20071460-20071636	AT1G53770.1  CDS  gene_syn T18A20.22, T18A20_22  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G50420.1); Has 40 Blast hits to 40 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G53770.1p  transcript_id AT1G53770.1  protein_id AT1G53770.1p  transcript_id AT1G53770.1  
At1g53780	chr1:020077200	0.0	C/20077200-20077235,20077045-20077095,20076661-20076975,20076511-20076590,20076307-20076433,20076130-20076202,20075940-20076031,20075785-20075862,20075618-20075679,20075374-20075518,20075016-20075234,20074751-20074932,20074468-20074643,20074212-20074372	AT1G53780.1  CDS  gene_syn T18A20.2, T18A20_2  go_component membrane|GO:0016020|17432890|IDA  go_process protein catabolic process|GO:0030163||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||IEA  go_function ATP binding|GO:0005524||IEA  go_function hydrolase activity|GO:0016787||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATPase activity|GO:0016887||ISS  product ATP binding / ATPase/ hydrolase/ nucleoside-triphosphatase/ nucleotide binding / peptidyl-prolyl cis-trans isomerase  note ATP binding / ATPase/ hydrolase/ nucleoside-triphosphatase/ nucleotide binding / peptidyl-prolyl cis-trans isomerase; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein catabolic process; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: RPT1A (REGULATORY PARTICLE TRIPLE-A 1A); ATPase (TAIR:AT1G53750.1); Has 20533 Blast hits to 19040 proteins in 1720 species: Archae - 829; Bacteria - 5491; Metazoa - 3959; Fungi - 2277; Plants - 1569; Viruses - 16; Other Eukaryotes - 6392 (source: NCBI BLink).  protein_id AT1G53780.1p  transcript_id AT1G53780.1  protein_id AT1G53780.1p  transcript_id AT1G53780.1  
At1g53785	chr1:020078496	0.0	C/20078496-20078642	AT1G53785.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G53785.1p  transcript_id AT1G53785.1  protein_id AT1G53785.1p  transcript_id AT1G53785.1  
At1g53790	chr1:020081332	0.0	C/20081332-20081394,20080971-20081052,20079694-20080883	AT1G53790.1  CDS  gene_syn T18A20.3, T18A20_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G31470.1); Has 935 Blast hits to 905 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 103; Fungi - 86; Plants - 678; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT1G53790.1p  transcript_id AT1G53790.1  protein_id AT1G53790.1p  transcript_id AT1G53790.1  
At1g53790	chr1:020081332	0.0	C/20081332-20081394,20080971-20081052,20079698-20080883,20079558-20079612	AT1G53790.2  CDS  gene_syn T18A20.3, T18A20_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G31470.1); Has 939 Blast hits to 909 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 103; Fungi - 86; Plants - 682; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT1G53790.2p  transcript_id AT1G53790.2  protein_id AT1G53790.2p  transcript_id AT1G53790.2  
At1g53800	chr1:020081888	0.0	W/20081888-20081900,20082168-20082545,20082643-20082695,20082788-20082825,20082921-20083239,20083327-20083628,20083717-20084320	AT1G53800.1  CDS  gene_syn T18A20.4, T18A20_4  go_function endonuclease activity|GO:0004519||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product endonuclease  note endonuclease; FUNCTIONS IN: endonuclease activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Intron-encoded nuclease 2 (InterPro:IPR003611); BEST Arabidopsis thaliana protein match is: endonuclease (TAIR:AT1G53250.1); Has 1002 Blast hits to 749 proteins in 180 species: Archae - 0; Bacteria - 147; Metazoa - 252; Fungi - 75; Plants - 52; Viruses - 4; Other Eukaryotes - 472 (source: NCBI BLink).  protein_id AT1G53800.1p  transcript_id AT1G53800.1  protein_id AT1G53800.1p  transcript_id AT1G53800.1  
At1g53800	chr1:020081888	0.0	W/20081888-20081912,20082168-20082545,20082643-20082695,20082788-20082825,20082921-20083239,20083327-20083628,20083717-20084320	AT1G53800.2  CDS  gene_syn T18A20.4, T18A20_4  go_function endonuclease activity|GO:0004519||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product endonuclease  note endonuclease; FUNCTIONS IN: endonuclease activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Intron-encoded nuclease 2 (InterPro:IPR003611); BEST Arabidopsis thaliana protein match is: endonuclease (TAIR:AT1G53250.1); Has 998 Blast hits to 745 proteins in 178 species: Archae - 0; Bacteria - 144; Metazoa - 255; Fungi - 74; Plants - 49; Viruses - 4; Other Eukaryotes - 472 (source: NCBI BLink).  protein_id AT1G53800.2p  transcript_id AT1G53800.2  protein_id AT1G53800.2p  transcript_id AT1G53800.2  
At1g53801	chr1:020083211	0.0	C/20083211-20084173	AT1G53801.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G53800  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G53801.1  
At1g53810	chr1:020085584	0.0	W/20085584-20090152	AT1G53810.1  mRNA_TE_gene  pseudo  gene_syn T18A20.5, T18A20_5  note Transposable element gene, copia-like retrotransposon family, has a 8.0e-248 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)  
At1g53815	chr1:020090249	0.0	C/20090249-20090962	AT1G53815.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G53550.1); Has 325 Blast hits to 321 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 325; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G53815.1p  transcript_id AT1G53815.1  protein_id AT1G53815.1p  transcript_id AT1G53815.1  
At1g53820	chr1:020091491	0.0	W/20091491-20092423	AT1G53820.1  CDS  gene_syn T18A20.16, T18A20_16  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: ATL3; protein binding / zinc ion binding (TAIR:AT1G72310.1); Has 6277 Blast hits to 6262 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 2105; Fungi - 486; Plants - 2605; Viruses - 71; Other Eukaryotes - 1010 (source: NCBI BLink).  protein_id AT1G53820.1p  transcript_id AT1G53820.1  protein_id AT1G53820.1p  transcript_id AT1G53820.1  
At1g53830	chr1:020098562	0.0	W/20098562-20099167,20099371-20099836,20100054-20100745	AT1G53830.1  CDS  gene_syn ATPME2, T18A20.6, T18A20_6  gene ATPME2  function encodes a pectin methylesterase  go_process cell wall modification|GO:0042545||IEA  go_component extracellular region|GO:0005576|8666246|ISS  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_function pectinesterase activity|GO:0030599|8666246|ISS  product ATPME2; pectinesterase  note ATPME2; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: extracellular region, plant-type cell wall; EXPRESSED IN: sepal, root, flower, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: ATPME3; pectinesterase (TAIR:AT3G14310.1); Has 1451 Blast hits to 1405 proteins in 193 species: Archae - 0; Bacteria - 261; Metazoa - 1; Fungi - 133; Plants - 1055; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G53830.1p  transcript_id AT1G53830.1  protein_id AT1G53830.1p  transcript_id AT1G53830.1  
At1g53840	chr1:020101533	0.0	W/20101533-20102616,20102782-20103458	AT1G53840.1  CDS  gene_syn ATPME1, T18A20.7, T18A20_7  gene ATPME1  function encodes a pectin methylesterase  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process cell wall modification|GO:0042545||IEA  go_component extracellular region|GO:0005576|8666246|ISS  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599|8666246|ISS  go_function pectinesterase activity|GO:0030599||ISS  product ATPME1; pectinesterase  note ATPME1; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: extracellular region, plasma membrane, membrane, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: ATPMEPCRC; pectinesterase (TAIR:AT3G14300.1); Has 1453 Blast hits to 1411 proteins in 186 species: Archae - 2; Bacteria - 243; Metazoa - 1; Fungi - 127; Plants - 1080; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G53840.1p  transcript_id AT1G53840.1  protein_id AT1G53840.1p  transcript_id AT1G53840.1  
At1g53850	chr1:020105779	0.0	C/20105779-20105792,20105603-20105684,20105302-20105382,20105010-20105123,20104823-20104924,20104651-20104709,20104456-20104558,20104294-20104359,20104131-20104223	AT1G53850.1  CDS  gene_syn 20S PROTEASOME SUBUNIT PAE1, PAE1, T18A20.8, T18A20_8  gene PAE1  function Encodes alpha5 subunit of 20s proteosome involved in protein degradation.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function endopeptidase activity|GO:0004175||IEA  go_function threonine-type endopeptidase activity|GO:0004298||IEA  go_component proteasome core complex|GO:0005839|9373170|TAS  go_component proteasome core complex|GO:0005839|9611183|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_function peptidase activity|GO:0008233||ISS  product PAE1; endopeptidase/ peptidase/ threonine-type endopeptidase  note PAE1; FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: response to cadmium ion, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, cytosolic ribosome, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome alpha-subunit, conserved site (InterPro:IPR000426), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: PAE2; endopeptidase/ peptidase/ threonine-type endopeptidase (TAIR:AT3G14290.1); Has 5669 Blast hits to 5666 proteins in 396 species: Archae - 510; Bacteria - 87; Metazoa - 2192; Fungi - 1232; Plants - 656; Viruses - 0; Other Eukaryotes - 992 (source: NCBI BLink).  protein_id AT1G53850.1p  transcript_id AT1G53850.1  protein_id AT1G53850.1p  transcript_id AT1G53850.1  
At1g53850	chr1:020105779	0.0	C/20105779-20105792,20105603-20105684,20105302-20105382,20105010-20105123,20104823-20104924,20104651-20104709,20104456-20104558,20104294-20104359,20104131-20104223	AT1G53850.2  CDS  gene_syn 20S PROTEASOME SUBUNIT PAE1, PAE1, T18A20.8, T18A20_8  gene PAE1  function Encodes alpha5 subunit of 20s proteosome involved in protein degradation.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function endopeptidase activity|GO:0004175||IEA  go_function threonine-type endopeptidase activity|GO:0004298||IEA  go_component proteasome core complex|GO:0005839|9373170|TAS  go_component proteasome core complex|GO:0005839|9611183|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_function peptidase activity|GO:0008233||ISS  product PAE1; endopeptidase/ peptidase/ threonine-type endopeptidase  note PAE1; FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome alpha-subunit, conserved site (InterPro:IPR000426), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: PAE2; endopeptidase/ peptidase/ threonine-type endopeptidase (TAIR:AT3G14290.1); Has 5669 Blast hits to 5666 proteins in 396 species: Archae - 510; Bacteria - 87; Metazoa - 2192; Fungi - 1232; Plants - 656; Viruses - 0; Other Eukaryotes - 992 (source: NCBI BLink).  protein_id AT1G53850.2p  transcript_id AT1G53850.2  protein_id AT1G53850.2p  transcript_id AT1G53850.2  
At1g53860	chr1:020109390	0.0	C/20109390-20109458,20108901-20109296,20108723-20108813,20108173-20108638,20108008-20108089,20107165-20107389	AT1G53860.1  CDS  gene_syn T18A20.9, T18A20_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product remorin family protein  note remorin family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal region (InterPro:IPR005516); BEST Arabidopsis thaliana protein match is: remorin family protein (TAIR:AT2G02170.2); Has 299 Blast hits to 297 proteins in 46 species: Archae - 2; Bacteria - 9; Metazoa - 24; Fungi - 14; Plants - 229; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G53860.1p  transcript_id AT1G53860.1  protein_id AT1G53860.1p  transcript_id AT1G53860.1  
At1g53870	chr1:020112295	0.0	W/20112295-20112591,20112701-20112982,20113065-20113094	AT1G53870.2  CDS  gene_syn T18A20.10, T18A20_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53890.2); Has 110 Blast hits to 110 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 110; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G53870.2p  transcript_id AT1G53870.2  protein_id AT1G53870.2p  transcript_id AT1G53870.2  
At1g53870	chr1:020112295	0.0	W/20112295-20112591,20112701-20113057	AT1G53870.1  CDS  gene_syn T18A20.10, T18A20_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53890.1); Has 127 Blast hits to 127 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G53870.1p  transcript_id AT1G53870.1  protein_id AT1G53870.1p  transcript_id AT1G53870.1  
At1g53880	chr1:020115069	0.0	W/20115069-20115326,20115411-20115704,20115928-20116374,20117240-20117392,20117475-20117616,20117730-20117971,20118063-20118269	AT1G53880.1  CDS  gene_syn T18A20.11, T18A20_11  go_process cellular metabolic process|GO:0044237||IEA  go_component eukaryotic translation initiation factor 2B complex|GO:0005851||ISS  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  go_function GTP binding|GO:0005525||ISS  product GTP binding / translation initiation factor  note GTP binding / translation initiation factor; FUNCTIONS IN: GTP binding, translation initiation factor activity; INVOLVED IN: translational initiation, cellular metabolic process; LOCATED IN: eukaryotic translation initiation factor 2B complex; CONTAINS InterPro DOMAIN/s: Initiation factor 2B related (InterPro:IPR000649), Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: GTP binding / translation initiation factor (TAIR:AT1G53900.1); Has 3217 Blast hits to 3217 proteins in 618 species: Archae - 223; Bacteria - 955; Metazoa - 447; Fungi - 307; Plants - 235; Viruses - 0; Other Eukaryotes - 1050 (source: NCBI BLink).  protein_id AT1G53880.1p  transcript_id AT1G53880.1  protein_id AT1G53880.1p  transcript_id AT1G53880.1  
At1g53885	chr1:020119798	0.0	W/20119798-20119985,20120085-20120277	AT1G53885.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product senescence-associated protein-related  note senescence-associated protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53903.1); Has 277 Blast hits to 277 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 277; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G53885.1p  transcript_id AT1G53885.1  protein_id AT1G53885.1p  transcript_id AT1G53885.1  
At1g53887	chr1:020122613	0.0	C/20122613-20122708	AT1G53887.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G53887.1p  transcript_id AT1G53887.1  protein_id AT1G53887.1p  transcript_id AT1G53887.1  
At1g53890	chr1:020124860	0.0	W/20124860-20125156,20125266-20125547,20125630-20125659	AT1G53890.2  CDS  gene_syn T18A20.12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53870.2); Has 110 Blast hits to 110 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 110; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G53890.2p  transcript_id AT1G53890.2  protein_id AT1G53890.2p  transcript_id AT1G53890.2  
At1g53890	chr1:020124860	0.0	W/20124860-20125156,20125266-20125622	AT1G53890.1  CDS  gene_syn T18A20.12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53870.1); Has 127 Blast hits to 127 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G53890.1p  transcript_id AT1G53890.1  protein_id AT1G53890.1p  transcript_id AT1G53890.1  
At1g53900	chr1:020127634	0.0	W/20127634-20127891,20127976-20128269,20128493-20128939,20129805-20129957,20130040-20130181,20130295-20130536,20130628-20130834	AT1G53900.1  CDS  gene_syn T18A20.13  go_process cellular metabolic process|GO:0044237||IEA  go_component eukaryotic translation initiation factor 2B complex|GO:0005851||ISS  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  go_function GTP binding|GO:0005525||ISS  product GTP binding / translation initiation factor  note GTP binding / translation initiation factor; FUNCTIONS IN: GTP binding, translation initiation factor activity; INVOLVED IN: translational initiation, cellular metabolic process; LOCATED IN: eukaryotic translation initiation factor 2B complex; CONTAINS InterPro DOMAIN/s: Initiation factor 2B related (InterPro:IPR000649), Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: GTP binding / translation initiation factor (TAIR:AT1G53880.1); Has 3217 Blast hits to 3217 proteins in 618 species: Archae - 223; Bacteria - 955; Metazoa - 447; Fungi - 307; Plants - 235; Viruses - 0; Other Eukaryotes - 1050 (source: NCBI BLink).  protein_id AT1G53900.1p  transcript_id AT1G53900.1  protein_id AT1G53900.1p  transcript_id AT1G53900.1  
At1g53903	chr1:020132363	0.0	W/20132363-20132550,20132650-20132842	AT1G53903.1  CDS  product unknown protein  note CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: senescence-associated protein-related (TAIR:AT1G53885.1); Has 277 Blast hits to 277 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 277; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G53903.1p  transcript_id AT1G53903.1  protein_id AT1G53903.1p  transcript_id AT1G53903.1  
At1g53910	chr1:020135242	0.0	W/20135242-20135536,20135800-20136581	AT1G53910.1  CDS  gene_syn RAP2.12, T18A20.14, T18A20_14  gene RAP2.12  function encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.12). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634|9192694|IC  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677|9192694|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9192694|TAS  product RAP2.12; DNA binding / transcription factor  note RAP2.12; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: RAP2.2; DNA binding / transcription factor (TAIR:AT3G14230.3); Has 4002 Blast hits to 3786 proteins in 206 species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi - 0; Plants - 3956; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT1G53910.1p  transcript_id AT1G53910.1  protein_id AT1G53910.1p  transcript_id AT1G53910.1  
At1g53910	chr1:020135242	0.0	W/20135242-20135536,20135800-20136581	AT1G53910.2  CDS  gene_syn RAP2.12, T18A20.14, T18A20_14  gene RAP2.12  function encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.12). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634|9192694|IC  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677|9192694|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9192694|TAS  product RAP2.12; DNA binding / transcription factor  note RAP2.12; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: RAP2.2; DNA binding / transcription factor (TAIR:AT3G14230.3); Has 4002 Blast hits to 3786 proteins in 206 species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi - 0; Plants - 3956; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT1G53910.2p  transcript_id AT1G53910.2  protein_id AT1G53910.2p  transcript_id AT1G53910.2  
At1g53910	chr1:020135242	0.0	W/20135242-20135536,20135806-20136581	AT1G53910.3  CDS  gene_syn RAP2.12, T18A20.14, T18A20_14  gene RAP2.12  function encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.12). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634|9192694|IC  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677|9192694|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9192694|TAS  product RAP2.12; DNA binding / transcription factor  note RAP2.12; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: RAP2.2; DNA binding / transcription factor (TAIR:AT3G14230.3); Has 4003 Blast hits to 3787 proteins in 206 species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi - 0; Plants - 3957; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT1G53910.3p  transcript_id AT1G53910.3  protein_id AT1G53910.3p  transcript_id AT1G53910.3  
At1g53920	chr1:020137725	0.0	W/20137725-20138025,20138115-20138239,20138721-20138945,20139020-20139275,20139387-20139637	AT1G53920.1  CDS  gene_syn GLIP5, T18A20.15, T18A20_15  gene GLIP5  function Contains lipase signature motif and GDSL domain.  go_process lipid metabolic process|GO:0006629||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298|16126835|ISS  product GLIP5; carboxylesterase/ lipase  note GLIP5; FUNCTIONS IN: lipase activity, carboxylesterase activity; INVOLVED IN: lipid metabolic process; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GLIP1 (GDSL LIPASE1); carboxylesterase/ lipase (TAIR:AT5G40990.1); Has 1728 Blast hits to 1706 proteins in 128 species: Archae - 0; Bacteria - 157; Metazoa - 1; Fungi - 19; Plants - 1546; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G53920.1p  transcript_id AT1G53920.1  protein_id AT1G53920.1p  transcript_id AT1G53920.1  
At1g53930	chr1:020140411	0.0	C/20140411-20140887	AT1G53930.1  CDS  gene_syn T18A20.19  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_process protein modification process|GO:0006464||ISS  go_function molecular_function|GO:0003674||ND  product ubiquitin family protein  note ubiquitin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: UBQ4; protein binding (TAIR:AT5G20620.1); Has 8103 Blast hits to 4538 proteins in 600 species: Archae - 0; Bacteria - 7; Metazoa - 3519; Fungi - 897; Plants - 1862; Viruses - 159; Other Eukaryotes - 1659 (source: NCBI BLink).  protein_id AT1G53930.1p  transcript_id AT1G53930.1  protein_id AT1G53930.1p  transcript_id AT1G53930.1  
At1g53935	chr1:020142548	0.0	C/20142548-20142604,20142065-20142442	AT1G53935.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23180.1); Has 16 Blast hits to 12 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G53935.1p  transcript_id AT1G53935.1  protein_id AT1G53935.1p  transcript_id AT1G53935.1  
At1g53940	chr1:020143279	0.0	W/20143279-20143552,20143632-20143759,20143857-20144087,20144169-20144424,20144562-20144758,20145556-20145780	AT1G53940.1  CDS  gene_syn GLIP2, T18A20.17  gene GLIP2  function Encodes a lipase, has in vitro lipase activity with p-nitrophenyl acetate and p-nitrophenyl butyrate, gene expression induced by hormones, negatively regulates auxin signaling, involved in disease resistance  go_component endomembrane system|GO:0012505||IEA  go_process response to ethylene stimulus|GO:0009723|19146828|IEP  go_process response to salicylic acid stimulus|GO:0009751|19146828|IEP  go_process response to jasmonic acid stimulus|GO:0009753|19146828|IEP  go_process defense response to bacterium|GO:0042742|19146828|IMP  go_function arylesterase activity|GO:0004064|19146828|IDA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298|16126835|ISS  product GLIP2; arylesterase/ carboxylesterase/ lipase  note GLIP2; FUNCTIONS IN: lipase activity, arylesterase activity, carboxylesterase activity; INVOLVED IN: response to ethylene stimulus, response to jasmonic acid stimulus, defense response to bacterium, response to salicylic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: seedling, stem, cotyledon, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GLIP1 (GDSL LIPASE1); carboxylesterase/ lipase (TAIR:AT5G40990.1); Has 1642 Blast hits to 1610 proteins in 94 species: Archae - 0; Bacteria - 79; Metazoa - 1; Fungi - 19; Plants - 1537; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G53940.1p  transcript_id AT1G53940.1  protein_id AT1G53940.1p  transcript_id AT1G53940.1  
At1g53950	chr1:020147698	0.0	C/20147698-20147988,20146448-20146807	AT1G53950.1  CDS  gene_syn T18A20.25  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_process protein modification process|GO:0006464||ISS  go_function molecular_function|GO:0003674||ND  product ubiquitin family protein  note ubiquitin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: UBQ4; protein binding (TAIR:AT5G20620.1); Has 7732 Blast hits to 3367 proteins in 578 species: Archae - 0; Bacteria - 8; Metazoa - 3202; Fungi - 777; Plants - 1716; Viruses - 301; Other Eukaryotes - 1728 (source: NCBI BLink).  protein_id AT1G53950.1p  transcript_id AT1G53950.1  protein_id AT1G53950.1p  transcript_id AT1G53950.1  
At1g53970	chr1:020148527	0.0	W/20148527-20148655,20148729-20148752	AT1G53970.1  CDS  gene_syn T18A20.21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G53970.1p  transcript_id AT1G53970.1  protein_id AT1G53970.1p  transcript_id AT1G53970.1  
At1g53980	chr1:020149334	0.0	C/20149334-20149609	AT1G53980.1  CDS  gene_syn T18A20.18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product polyubiquitin-related  note polyubiquitin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ubiquitin family protein (TAIR:AT1G53950.1); Has 3448 Blast hits to 1018 proteins in 334 species: Archae - 0; Bacteria - 0; Metazoa - 1528; Fungi - 379; Plants - 862; Viruses - 11; Other Eukaryotes - 668 (source: NCBI BLink).  protein_id AT1G53980.1p  transcript_id AT1G53980.1  protein_id AT1G53980.1p  transcript_id AT1G53980.1  
At1g53990	chr1:020151016	0.0	W/20151016-20151256,20151365-20151492,20151848-20152078,20152160-20152415,20152505-20152752	AT1G53990.1  CDS  gene_syn F15I1.7, F15I1_7, GLIP3  gene GLIP3  function Contains lipase signature motif and GDSL domain.  go_component endomembrane system|GO:0012505||IEA  go_process glycerol biosynthetic process|GO:0006114||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298|16126835|ISS  go_function lipase activity|GO:0016298||ISS  product GLIP3; carboxylesterase/ lipase  note GLIP3; FUNCTIONS IN: lipase activity, carboxylesterase activity; INVOLVED IN: glycerol biosynthetic process, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: GLIP1 (GDSL LIPASE1); carboxylesterase/ lipase (TAIR:AT5G40990.1); Has 1651 Blast hits to 1637 proteins in 102 species: Archae - 0; Bacteria - 93; Metazoa - 1; Fungi - 39; Plants - 1501; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G53990.1p  transcript_id AT1G53990.1  protein_id AT1G53990.1p  transcript_id AT1G53990.1  
At1g54000	chr1:020156107	0.0	C/20156107-20156365,20155664-20155782,20154964-20155432,20154548-20154876	AT1G54000.1  CDS  gene_syn F15I1.8, F15I1_8  go_component plant-type vacuole|GO:0000325|16618929|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_component vacuolar membrane|GO:0005774|16618929|IDA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298||ISS  product myrosinase-associated protein, putative  note myrosinase-associated protein, putative; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type cell wall, plant-type vacuole; EXPRESSED IN: stem, cultured cell, callus; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: myrosinase-associated protein, putative (TAIR:AT1G54010.1); Has 1653 Blast hits to 1642 proteins in 119 species: Archae - 0; Bacteria - 160; Metazoa - 1; Fungi - 4; Plants - 1471; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G54000.1p  transcript_id AT1G54000.1  protein_id AT1G54000.1p  transcript_id AT1G54000.1  
At1g54010	chr1:020160489	0.0	C/20160489-20160747,20160079-20160197,20159256-20159724,20158854-20159167	AT1G54010.1  CDS  gene_syn F15I1.9, F15I1_9  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product myrosinase-associated protein, putative  note myrosinase-associated protein, putative; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: myrosinase-associated protein, putative (TAIR:AT1G54000.1); Has 1582 Blast hits to 1573 proteins in 92 species: Archae - 0; Bacteria - 104; Metazoa - 1; Fungi - 0; Plants - 1469; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G54010.1p  transcript_id AT1G54010.1  protein_id AT1G54010.1p  transcript_id AT1G54010.1  
At1g54020	chr1:020162813	0.0	C/20162813-20162923,20162539-20162739,20162206-20162458,20161805-20162100	AT1G54020.1  CDS  gene_syn F15I1.10, F15I1_10  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product myrosinase-associated protein, putative  note myrosinase-associated protein, putative; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: myrosinase-associated protein, putative (TAIR:AT1G54010.1); Has 1392 Blast hits to 1383 proteins in 47 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 1389; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G54020.1p  transcript_id AT1G54020.1  protein_id AT1G54020.1p  transcript_id AT1G54020.1  
At1g54020	chr1:020162813	0.0	C/20162813-20162923,20162539-20162739,20162206-20162458,20161805-20162100	AT1G54020.3  CDS  gene_syn F15I1.10, F15I1_10  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product myrosinase-associated protein, putative  note myrosinase-associated protein, putative; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: myrosinase-associated protein, putative (TAIR:AT1G54010.1); Has 1392 Blast hits to 1383 proteins in 47 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 1389; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G54020.3p  transcript_id AT1G54020.3  protein_id AT1G54020.3p  transcript_id AT1G54020.3  
At1g54020	chr1:020163457	0.0	C/20163457-20163706,20162813-20162931,20162539-20162739,20162206-20162458,20161805-20162100	AT1G54020.2  CDS  gene_syn F15I1.10, F15I1_10  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product myrosinase-associated protein, putative  note myrosinase-associated protein, putative; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: myrosinase-associated protein, putative (TAIR:AT1G54010.1); Has 1546 Blast hits to 1534 proteins in 67 species: Archae - 0; Bacteria - 48; Metazoa - 1; Fungi - 2; Plants - 1491; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G54020.2p  transcript_id AT1G54020.2  protein_id AT1G54020.2p  transcript_id AT1G54020.2  
At1g54030	chr1:020167685	0.0	W/20167685-20167991,20168072-20168187,20168498-20168698,20168777-20169029,20169100-20169476	AT1G54030.1  CDS  gene_syn F15I1.11, F15I1_11  go_component vacuole|GO:0005773|15539469|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298||ISS  product GDSL-motif lipase, putative  note GDSL-motif lipase, putative; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: ESM1 (epithiospecifier modifier 1); carboxylesterase/ hydrolase, acting on ester bonds (TAIR:AT3G14210.1); Has 1679 Blast hits to 1667 proteins in 121 species: Archae - 0; Bacteria - 157; Metazoa - 1; Fungi - 11; Plants - 1492; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G54030.1p  transcript_id AT1G54030.1  protein_id AT1G54030.1p  transcript_id AT1G54030.1  
At1g54035	chr1:020169920	0.0	C/20169920-20170665	AT1G54035.1  pseudogenic_transcript  pseudo  function pseudogene of epithiospecifier protein  
At1g54040	chr1:020170995	0.0	C/20170995-20171780	AT1G54040.1  CDS  gene_syn EPITHIOSPECIFIER PROTEIN, EPITHIOSPECIFYING SENESCENCE REGULATOR, ESP, ESR, F15I1.12, F15I1_12, TASTY  gene ESP  function Epithiospecifier protein, interacts with WRKY53. Involved in pathogen resistance and leaf senescence.  go_component nucleus|GO:0005634|17369373|IDA  go_process response to jasmonic acid stimulus|GO:0009753|11752388|TAS  go_process response to jasmonic acid stimulus|GO:0009753|17369373|IMP  go_process leaf senescence|GO:0010150|17369373|IMP  go_process glucosinolate catabolic process|GO:0019762|11752388|IDA  go_process defense response to bacterium|GO:0042742|17369373|IMP  go_function enzyme regulator activity|GO:0030234|11752388|IDA  product ESP (EPITHIOSPECIFIER PROTEIN); enzyme regulator  note EPITHIOSPECIFIER PROTEIN (ESP); FUNCTIONS IN: enzyme regulator activity; INVOLVED IN: response to jasmonic acid stimulus, leaf senescence, glucosinolate catabolic process, defense response to bacterium; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: NSP1 (NITRILE SPECIFIER PROTEIN 1) (TAIR:AT3G16400.2); Has 4258 Blast hits to 2909 proteins in 204 species: Archae - 4; Bacteria - 143; Metazoa - 2995; Fungi - 280; Plants - 461; Viruses - 2; Other Eukaryotes - 373 (source: NCBI BLink).  protein_id AT1G54040.1p  transcript_id AT1G54040.1  protein_id AT1G54040.1p  transcript_id AT1G54040.1  
At1g54040	chr1:020173853	0.0	C/20173853-20173885,20170995-20171987	AT1G54040.2  CDS  gene_syn EPITHIOSPECIFIER PROTEIN, EPITHIOSPECIFYING SENESCENCE REGULATOR, ESP, ESR, F15I1.12, F15I1_12, TASTY  gene ESP  function Epithiospecifier protein, interacts with WRKY53. Involved in pathogen resistance and leaf senescence.  go_component nucleus|GO:0005634|17369373|IDA  go_process response to jasmonic acid stimulus|GO:0009753|11752388|TAS  go_process response to jasmonic acid stimulus|GO:0009753|17369373|IMP  go_process leaf senescence|GO:0010150|17369373|IMP  go_process glucosinolate catabolic process|GO:0019762|11752388|IDA  go_process defense response to bacterium|GO:0042742|17369373|IMP  go_function enzyme regulator activity|GO:0030234|11752388|IDA  product ESP (EPITHIOSPECIFIER PROTEIN); enzyme regulator  note EPITHIOSPECIFIER PROTEIN (ESP); FUNCTIONS IN: enzyme regulator activity; INVOLVED IN: response to jasmonic acid stimulus, leaf senescence, glucosinolate catabolic process, defense response to bacterium; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: NSP1 (NITRILE SPECIFIER PROTEIN 1) (TAIR:AT3G16400.2); Has 7180 Blast hits to 4208 proteins in 237 species: Archae - 6; Bacteria - 244; Metazoa - 5088; Fungi - 437; Plants - 582; Viruses - 16; Other Eukaryotes - 807 (source: NCBI BLink).  protein_id AT1G54040.2p  transcript_id AT1G54040.2  protein_id AT1G54040.2p  transcript_id AT1G54040.2  
At1g54050	chr1:020179919	0.0	C/20179919-20180122,20179558-20179821	AT1G54050.1  CDS  gene_syn F15I1.13, F15I1_13  go_process response to heat|GO:0009408|17059409|IEP  go_process response to heat|GO:0009408||ISS  go_process response to high light intensity|GO:0009644|17059409|IEP  go_process response to hydrogen peroxide|GO:0042542|17059409|IEP  go_function molecular_function|GO:0003674||ND  product 17.4 kDa class III heat shock protein (HSP17.4-CIII)  note 17.4 kDa class III heat shock protein (HSP17.4-CIII); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: AT-HSP17.6A (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.6A); unfolded protein binding (TAIR:AT5G12030.1); Has 2777 Blast hits to 2777 proteins in 704 species: Archae - 100; Bacteria - 1361; Metazoa - 1; Fungi - 104; Plants - 843; Viruses - 0; Other Eukaryotes - 368 (source: NCBI BLink).  protein_id AT1G54050.1p  transcript_id AT1G54050.1  protein_id AT1G54050.1p  transcript_id AT1G54050.1  
At1g54060	chr1:020180972	0.0	W/20180972-20182123	AT1G54060.1  CDS  gene_syn ARABIDOPSIS 6B-INTERACTING PROTEIN 1-LIKE 1, ASIL1, F15I1.14, F15I1_14  gene ASIL1  function Member of the trihelix DNA binding protein family. Nuclear localized. Involved in repressing seed maturation genes during seed germination and seedling development.  go_component nucleolus|GO:0005730|15496452|IDA  go_component nucleus|GO:0005634|19155348|IDA  go_process response to auxin stimulus|GO:0009733|19155348|IEP  go_process regulation of seed germination|GO:0010029|19155348|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process regulation of shoot development|GO:0048831|19155348|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function sequence-specific DNA binding|GO:0043565|19155348|IPI  product ASIL1 (ARABIDOPSIS 6B-INTERACTING PROTEIN 1-LIKE 1); sequence-specific DNA binding / transcription factor  note ARABIDOPSIS 6B-INTERACTING PROTEIN 1-LIKE 1 (ASIL1); FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding; INVOLVED IN: regulation of seed germination, regulation of shoot development, response to auxin stimulus, regulation of transcription; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: MADF domain (InterPro:IPR006578); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT3G14180.1); Has 1030 Blast hits to 899 proteins in 154 species: Archae - 0; Bacteria - 136; Metazoa - 372; Fungi - 68; Plants - 333; Viruses - 7; Other Eukaryotes - 114 (source: NCBI BLink).  protein_id AT1G54060.1p  transcript_id AT1G54060.1  protein_id AT1G54060.1p  transcript_id AT1G54060.1  
At1g54070	chr1:020182683	0.0	W/20182683-20182932,20183018-20183111,20183215-20183242	AT1G54070.1  CDS  gene_syn F15I1.15, F15I1_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product dormancy/auxin associated protein-related  note dormancy/auxin associated protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Dormancyauxin associated (InterPro:IPR008406); BEST Arabidopsis thaliana protein match is: dormancy/auxin associated family protein (TAIR:AT1G56220.1); Has 105 Blast hits to 105 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G54070.1p  transcript_id AT1G54070.1  protein_id AT1G54070.1p  transcript_id AT1G54070.1  
At1g54080	chr1:020186693	0.0	C/20186693-20186824,20186282-20186343,20186085-20186187,20185904-20185980,20185758-20185819,20185574-20185661,20185313-20185388,20185195-20185225,20184778-20184897,20184594-20184679,20184321-20184497,20183923-20184189	AT1G54080.1  CDS  gene_syn F15I1.16, F15I1_16, OLIGOURIDYLATE-BINDING PROTEIN 1A, UBP1A  gene UBP1A  go_component plasma membrane|GO:0005886|17317660|IDA  go_function mRNA 3 -UTR binding|GO:0003730|10747031|ISS  product oligouridylate-binding protein, putative  note OLIGOURIDYLATE-BINDING PROTEIN 1A (UBP1A); FUNCTIONS IN: mRNA 3 -UTR binding; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: oligouridylate-binding protein, putative (TAIR:AT3G14100.1); Has 20575 Blast hits to 14376 proteins in 578 species: Archae - 0; Bacteria - 888; Metazoa - 12133; Fungi - 2382; Plants - 3008; Viruses - 0; Other Eukaryotes - 2164 (source: NCBI BLink).  protein_id AT1G54080.1p  transcript_id AT1G54080.1  protein_id AT1G54080.1p  transcript_id AT1G54080.1  
At1g54080	chr1:020186693	0.0	C/20186693-20186824,20186282-20186343,20186085-20186187,20185904-20185980,20185758-20185819,20185574-20185661,20185313-20185400,20185195-20185225,20184778-20184897,20184594-20184679,20184321-20184497,20183923-20184189	AT1G54080.2  CDS  gene_syn F15I1.16, F15I1_16, OLIGOURIDYLATE-BINDING PROTEIN 1A, UBP1A  gene UBP1A  go_component plasma membrane|GO:0005886|17317660|IDA  go_function mRNA 3 -UTR binding|GO:0003730|10747031|ISS  product oligouridylate-binding protein, putative  note OLIGOURIDYLATE-BINDING PROTEIN 1A (UBP1A); FUNCTIONS IN: mRNA 3 -UTR binding; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: oligouridylate-binding protein, putative (TAIR:AT3G14100.1); Has 17031 Blast hits to 11784 proteins in 528 species: Archae - 0; Bacteria - 657; Metazoa - 10092; Fungi - 1999; Plants - 2583; Viruses - 0; Other Eukaryotes - 1700 (source: NCBI BLink).  protein_id AT1G54080.2p  transcript_id AT1G54080.2  protein_id AT1G54080.2p  transcript_id AT1G54080.2  
At1g54090	chr1:020189737	0.0	W/20189737-20191605	AT1G54090.1  CDS  gene_syn ATEXO70D2, F15I1.17, F15I1_17, exocyst subunit EXO70 family protein D2  gene ATEXO70D2  function A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.  go_component exocyst|GO:0000145||IEA  go_process exocytosis|GO:0006887||IEA  go_component exocyst|GO:0000145||ISS  go_process vesicle docking during exocytosis|GO:0006904||ISS  go_function protein binding|GO:0005515||ISS  product ATEXO70D2 (exocyst subunit EXO70 family protein D2); protein binding  note exocyst subunit EXO70 family protein D2 (ATEXO70D2); FUNCTIONS IN: protein binding; INVOLVED IN: exocytosis, vesicle docking during exocytosis; LOCATED IN: exocyst; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: ATEXO70D3 (exocyst subunit EXO70 family protein D3); protein binding (TAIR:AT3G14090.1); Has 556 Blast hits to 554 proteins in 86 species: Archae - 2; Bacteria - 2; Metazoa - 110; Fungi - 55; Plants - 374; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G54090.1p  transcript_id AT1G54090.1  protein_id AT1G54090.1p  transcript_id AT1G54090.1  
At1g54095	chr1:020193271	0.0	W/20193271-20193723	AT1G54095.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1677, plant (InterPro:IPR012876); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72510.2); Has 130 Blast hits to 129 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 130; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G54095.1p  transcript_id AT1G54095.1  protein_id AT1G54095.1p  transcript_id AT1G54095.1  
At1g54100	chr1:020198719	0.0	C/20198719-20198853,20198379-20198465,20198162-20198293,20197905-20197977,20197736-20197758,20197587-20197650,20197225-20197270,20196748-20196928,20196484-20196660,20196236-20196400,20195997-20196137,20195820-20195917,20195580-20195729,20195435-20195489	AT1G54100.1  CDS  gene_syn ALDH7B4, Aldehyde Dehydrogenase 7B4, F15I1.19, F15I1_19  gene ALDH7B4  function Aldehyde dehydrogenase  go_function oxidoreductase activity|GO:0016491||IEA  go_process response to desiccation|GO:0009269|15830124|IEP  go_process response to salt stress|GO:0009651|11351099|IEP  go_process response to salt stress|GO:0009651|15830124|IEP  go_process response to abscisic acid stimulus|GO:0009737|15830124|IEP  go_function 3-chloroallyl aldehyde dehydrogenase activity|GO:0004028||ISS  product ALDH7B4 (Aldehyde Dehydrogenase 7B4); 3-chloroallyl aldehyde dehydrogenase/ oxidoreductase  note Aldehyde Dehydrogenase 7B4 (ALDH7B4); FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, oxidoreductase activity; INVOLVED IN: response to salt stress, response to desiccation, response to abscisic acid stimulus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: ALDH5F1; 3-chloroallyl aldehyde dehydrogenase/ NAD or NADH binding / succinate-semialdehyde dehydrogenase (TAIR:AT1G79440.1); Has 41078 Blast hits to 40966 proteins in 1790 species: Archae - 241; Bacteria - 19821; Metazoa - 2166; Fungi - 1322; Plants - 585; Viruses - 0; Other Eukaryotes - 16943 (source: NCBI BLink).  protein_id AT1G54100.1p  transcript_id AT1G54100.1  protein_id AT1G54100.1p  transcript_id AT1G54100.1  
At1g54100	chr1:020198719	0.0	C/20198719-20198853,20198379-20198465,20198162-20198293,20197905-20197977,20197736-20197758,20197587-20197650,20197225-20197270,20196748-20196928,20196484-20196660,20196236-20196400,20195997-20196137,20195820-20195917,20195580-20195729,20195435-20195489	AT1G54100.2  CDS  gene_syn ALDH7B4, Aldehyde Dehydrogenase 7B4, F15I1.19, F15I1_19  gene ALDH7B4  function Aldehyde dehydrogenase  go_function oxidoreductase activity|GO:0016491||IEA  go_process response to desiccation|GO:0009269|15830124|IEP  go_process response to salt stress|GO:0009651|11351099|IEP  go_process response to salt stress|GO:0009651|15830124|IEP  go_process response to abscisic acid stimulus|GO:0009737|15830124|IEP  go_function 3-chloroallyl aldehyde dehydrogenase activity|GO:0004028||ISS  product ALDH7B4 (Aldehyde Dehydrogenase 7B4); 3-chloroallyl aldehyde dehydrogenase/ oxidoreductase  note Aldehyde Dehydrogenase 7B4 (ALDH7B4); FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, oxidoreductase activity; INVOLVED IN: response to salt stress, response to desiccation, response to abscisic acid stimulus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: ALDH5F1; 3-chloroallyl aldehyde dehydrogenase/ NAD or NADH binding / succinate-semialdehyde dehydrogenase (TAIR:AT1G79440.1); Has 41078 Blast hits to 40966 proteins in 1790 species: Archae - 241; Bacteria - 19821; Metazoa - 2166; Fungi - 1322; Plants - 585; Viruses - 0; Other Eukaryotes - 16943 (source: NCBI BLink).  protein_id AT1G54100.2p  transcript_id AT1G54100.2  protein_id AT1G54100.2p  transcript_id AT1G54100.2  
At1g54110	chr1:020199909	0.0	W/20199909-20199992,20200104-20200171,20200426-20200498,20200782-20200897,20200977-20201069,20201177-20201276,20201447-20201623	AT1G54110.1  CDS  gene_syn F15I1.20  go_process cation transport|GO:0006812|11500563|IC  go_function cation:cation antiporter activity|GO:0015491|11500563|NAS  product cation exchanger, putative (CAX10)  note cation exchanger, putative (CAX10); FUNCTIONS IN: cation:cation antiporter activity; INVOLVED IN: cation transport; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55600.1); Has 153 Blast hits to 153 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 7; Plants - 43; Viruses - 2; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G54110.1p  transcript_id AT1G54110.1  protein_id AT1G54110.1p  transcript_id AT1G54110.1  
At1g54115	chr1:020202118	0.0	W/20202118-20204052	AT1G54115.1  CDS  gene_syn ATCCX4, CATION CALCIUM EXCHANGER 4, CCX4  gene CCX4  function Involved in cation (Na and K) homeostasis.  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|18775974|IDA  go_process cation transport|GO:0006812||ISS  go_process cellular cation homeostasis|GO:0030003|18775974|IDA  go_function cation:cation antiporter activity|GO:0015491||ISS  product CCX4 (CATION CALCIUM EXCHANGER 4); cation:cation antiporter  note CATION CALCIUM EXCHANGER 4 (CCX4); FUNCTIONS IN: cation:cation antiporter activity; INVOLVED IN: cellular cation homeostasis, cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sodium/calcium exchanger membrane region (InterPro:IPR004837); BEST Arabidopsis thaliana protein match is: CAX9 (CATION EXCHANGER 9); cation transmembrane transporter/ cation:cation antiporter/ manganese ion transmembrane transporter/ potassium ion transmembrane transporter/ sodium ion transmembrane transporter (TAIR:AT3G14070.1); Has 3129 Blast hits to 2530 proteins in 555 species: Archae - 27; Bacteria - 537; Metazoa - 1587; Fungi - 195; Plants - 106; Viruses - 0; Other Eukaryotes - 677 (source: NCBI BLink).  protein_id AT1G54115.1p  transcript_id AT1G54115.1  protein_id AT1G54115.1p  transcript_id AT1G54115.1  
At1g54120	chr1:020207078	0.0	W/20207078-20207452	AT1G54120.1  CDS  gene_syn F15I1.22, F15I1_22  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14060.1); Has 12 Blast hits to 12 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G54120.1p  transcript_id AT1G54120.1  protein_id AT1G54120.1p  transcript_id AT1G54120.1  
At1g54130	chr1:020211177	0.0	W/20211177-20211863,20211944-20212129,20212211-20212671,20212774-20212932,20213019-20213361,20213450-20213761	AT1G54130.1  CDS  gene_syn AT-RSH3, ATRSH3, F15I1.23, F15I1_23, RELA/SPOT HOMOLOG 3, RSH3  gene RSH3  go_process guanosine tetraphosphate metabolic process|GO:0015969||IEA  go_component chloroplast|GO:0009507|18535838|IDA  go_function GTP diphosphokinase activity|GO:0008728|18535838|IGI  product RSH3 (RELA/SPOT HOMOLOG 3); GTP diphosphokinase  note RELA/SPOT HOMOLOG 3 (RSH3); FUNCTIONS IN: GTP diphosphokinase activity; INVOLVED IN: guanosine tetraphosphate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD region, subdomain (InterPro:IPR006674), Metal-dependent phosphohydrolase, HD region (InterPro:IPR003607), RelA/SpoT (InterPro:IPR007685); BEST Arabidopsis thaliana protein match is: RSH2 (RELA-SPOT HOMOLOG 2); GTP diphosphokinase (TAIR:AT3G14050.1); Has 8993 Blast hits to 8061 proteins in 1317 species: Archae - 2; Bacteria - 4486; Metazoa - 300; Fungi - 18; Plants - 129; Viruses - 2; Other Eukaryotes - 4056 (source: NCBI BLink).  protein_id AT1G54130.1p  transcript_id AT1G54130.1  protein_id AT1G54130.1p  transcript_id AT1G54130.1  
At1g54140	chr1:020214609	0.0	C/20214609-20214869,20214076-20214366	AT1G54140.1  CDS  gene_syn F15I1.24, F15I1_24, TAF9, TAFII21, TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNI, TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT, TBP-ASSOCIATED FACTOR 9  gene TAFII21  function putative TATA binding protein associated factor 21kDa  go_component transcription factor TFIID complex|GO:0005669||IEA  go_process transcription initiation|GO:0006352||IEA  go_function DNA binding|GO:0003677||IEA  go_component transcription factor TFIID complex|GO:0005669||ISS  go_process transcription initiation|GO:0006352||ISS  go_function transcription initiation factor activity|GO:0016986||ISS  product TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT); DNA binding / transcription initiation factor  note TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT (TAFII21); FUNCTIONS IN: transcription initiation factor activity, DNA binding; INVOLVED IN: transcription initiation; LOCATED IN: transcription factor TFIID complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor TAFII-31 (InterPro:IPR003162), Histone-fold (InterPro:IPR009072); Has 313 Blast hits to 313 proteins in 118 species: Archae - 0; Bacteria - 2; Metazoa - 164; Fungi - 84; Plants - 29; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT1G54140.1p  transcript_id AT1G54140.1  protein_id AT1G54140.1p  transcript_id AT1G54140.1  
At1g54150	chr1:020215480	0.0	W/20215480-20215851,20216079-20216177,20216266-20216427,20216519-20216640,20216823-20216942,20217027-20217303	AT1G54150.1  CDS  gene_syn F15I1.25, F15I1_25  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: ZCF61; protein binding / zinc ion binding (TAIR:AT1G59560.1); Has 1572 Blast hits to 1571 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 1041; Fungi - 23; Plants - 178; Viruses - 133; Other Eukaryotes - 197 (source: NCBI BLink).  protein_id AT1G54150.1p  transcript_id AT1G54150.1  protein_id AT1G54150.1p  transcript_id AT1G54150.1  
At1g54160	chr1:020218248	0.0	C/20218248-20218706,20217989-20218162,20217581-20217874	AT1G54160.1  CDS  gene_syn F15I1.26, F15I1_26, NF-YA5, NFYA5, NUCLEAR FACTOR Y A5, NUCLEAR FACTOR Y, SUBUNIT A5  gene NF-YA5  function Encodes a member of the CCAAT-binding transcription factor (CBF-B/NF-YA) family. Expression is upregulated in response to ABA and drought. This regulation appears to be mediated by MIR169A which is downregulated in response to drought. NFYA5 is a target of MIR169A. Loss of function mutations are hypersensitive to drought.  go_component nucleus|GO:0005634||IEA  go_component CCAAT-binding factor complex|GO:0016602||IEA  go_component CCAAT-binding factor complex|GO:0016602||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to water deprivation|GO:0009414|18682547|IMP  go_process negative regulation of gene-specific transcription|GO:0032582|19207209|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function specific transcriptional repressor activity|GO:0016566|19207209|IDA  product NF-YA5 (NUCLEAR FACTOR Y, SUBUNIT A5); specific transcriptional repressor/ transcription factor  note NUCLEAR FACTOR Y, SUBUNIT A5 (NF-YA5); FUNCTIONS IN: transcription factor activity, specific transcriptional repressor activity; INVOLVED IN: response to water deprivation, negative regulation of gene-specific transcription, regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: NF-YA6 (NUCLEAR FACTOR Y, SUBUNIT A6); transcription factor (TAIR:AT3G14020.1); Has 440 Blast hits to 440 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 88; Plants - 215; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G54160.1p  transcript_id AT1G54160.1  protein_id AT1G54160.1p  transcript_id AT1G54160.1  
At1g54170	chr1:020224814	0.0	C/20224814-20224919,20224556-20224711,20224328-20224452,20224022-20224212,20223168-20223345,20222849-20223070,20222648-20222775,20222518-20222581,20222388-20222418,20222066-20222283,20221840-20221983,20221644-20221742,20221483-20221551,20221353-20221385	AT1G54170.1  CDS  gene_syn CID3, CTC-Interacting Domain 3, F15I1.27, F15I1_27  gene CID3  function ataxin-2-related, similar to SCA2 (GI:1770390) (Homo sapiens); similar to ataxin-2 (GI:3005020) (Mus musculus). Member of a family of PAM2 motif containing proteins.  product CID3 (CTC-Interacting Domain 3)  note CTC-Interacting Domain 3 (CID3); EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: LsmAD domain (InterPro:IPR009604); BEST Arabidopsis thaliana protein match is: CID4 (CTC-Interacting Domain 4); protein binding (TAIR:AT3G14010.3); Has 793 Blast hits to 618 proteins in 163 species: Archae - 0; Bacteria - 20; Metazoa - 408; Fungi - 151; Plants - 83; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).  protein_id AT1G54170.1p  transcript_id AT1G54170.1  protein_id AT1G54170.1p  transcript_id AT1G54170.1  
At1g54180	chr1:020227697	0.0	W/20227697-20227828,20228139-20228515,20228800-20228877,20229031-20229163,20229260-20229573,20229650-20229728	AT1G54180.1  CDS  gene_syn ARABIDOPSIS THALIANA BREVIS RADIX-LIKE 3, ATBRXL3, BREVIS RADIX-LIKE 3, BRX-LIKE3, F15I1.28, F15I1_28  gene BRX-LIKE3  function Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product BRX-LIKE3 (BREVIS RADIX-LIKE 3)  note BREVIS RADIX-LIKE 3 (BRX-LIKE3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591); BEST Arabidopsis thaliana protein match is: ATBRXL2 (TAIR:AT3G14000.2); Has 323 Blast hits to 239 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 323; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G54180.1p  transcript_id AT1G54180.1  protein_id AT1G54180.1p  transcript_id AT1G54180.1  
At1g54180	chr1:020227697	0.0	W/20227697-20227828,20228139-20228515,20229031-20229163,20229260-20229573,20229650-20229728	AT1G54180.2  CDS  gene_syn ARABIDOPSIS THALIANA BREVIS RADIX-LIKE 3, ATBRXL3, BREVIS RADIX-LIKE 3, BRX-LIKE3, F15I1.28, F15I1_28  gene BRX-LIKE3  function Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product BRX-LIKE3 (BREVIS RADIX-LIKE 3)  note BREVIS RADIX-LIKE 3 (BRX-LIKE3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591); BEST Arabidopsis thaliana protein match is: ATBRXL2 (TAIR:AT3G14000.2).  protein_id AT1G54180.2p  transcript_id AT1G54180.2  protein_id AT1G54180.2p  transcript_id AT1G54180.2  
At1g54200	chr1:020235855	0.0	W/20235855-20236955	AT1G54200.1  CDS  gene_syn F20D21.2, F20D21_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13980.1); Has 1298 Blast hits to 515 proteins in 102 species: Archae - 0; Bacteria - 43; Metazoa - 442; Fungi - 73; Plants - 54; Viruses - 0; Other Eukaryotes - 686 (source: NCBI BLink).  protein_id AT1G54200.1p  transcript_id AT1G54200.1  protein_id AT1G54200.1p  transcript_id AT1G54200.1  
At1g54210	chr1:020241278	0.0	W/20241278-20241317,20241451-20241509,20241650-20241718,20241806-20241868,20241961-20242020	AT1G54210.1  CDS  gene_syn APG12, ATG12A, AUTOPHAGY 12, AUTOPHAGY 12 A, F20D21.38, F20D21_38  gene ATG12A  go_component cytoplasm|GO:0005737||IEA  go_process autophagic vacuole formation|GO:0000045||IEA  go_process autophagy|GO:0006914||ISS  go_process protein ubiquitination during ubiquitin-dependent protein catabolic process|GO:0042787||ISS  go_function protein binding|GO:0005515||ISS  product ATG12A (AUTOPHAGY 12 A); protein binding  note AUTOPHAGY 12 A (ATG12A); FUNCTIONS IN: protein binding; INVOLVED IN: autophagy, protein ubiquitination during ubiquitin-dependent protein catabolic process, autophagic vacuole formation; LOCATED IN: cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy protein 12 (InterPro:IPR007242); BEST Arabidopsis thaliana protein match is: APG12B (AUTOPHAGY 12 B) (TAIR:AT3G13970.1); Has 228 Blast hits to 228 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 96; Fungi - 96; Plants - 30; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G54210.1p  transcript_id AT1G54210.1  protein_id AT1G54210.1p  transcript_id AT1G54210.1  
At1g54215	chr1:020243118	0.0	W/20243118-20243627	AT1G54215.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product proline-rich family protein  note proline-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 93542 Blast hits to 36322 proteins in 1506 species: Archae - 161; Bacteria - 15069; Metazoa - 35815; Fungi - 9164; Plants - 15180; Viruses - 3438; Other Eukaryotes - 14715 (source: NCBI BLink).  protein_id AT1G54215.1p  transcript_id AT1G54215.1  protein_id AT1G54215.1p  transcript_id AT1G54215.1  
At1g54217	chr1:020244996	0.0	C/20244996-20245005,20244704-20244821,20244501-20244618,20244346-20244408	AT1G54217.1  CDS  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Expressed protein  note Expressed protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26060.1); Has 73 Blast hits to 73 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G54217.1p  transcript_id AT1G54217.1  protein_id AT1G54217.1p  transcript_id AT1G54217.1  
At1g54217	chr1:020244996	0.0	C/20244996-20245005,20244704-20244821,20244501-20244618,20244346-20244408	AT1G54217.3  CDS  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Expressed protein  note Expressed protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26060.1).  protein_id AT1G54217.3p  transcript_id AT1G54217.3  protein_id AT1G54217.3p  transcript_id AT1G54217.3  
At1g54217	chr1:020244996	0.0	C/20244996-20245005,20244704-20244824,20244501-20244618,20244346-20244408	AT1G54217.2  CDS  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Expressed protein  note Expressed protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26060.1).  protein_id AT1G54217.2p  transcript_id AT1G54217.2  protein_id AT1G54217.2p  transcript_id AT1G54217.2  
At1g54220	chr1:020250170	0.0	C/20250170-20250208,20249793-20249883,20249610-20249674,20249418-20249503,20249271-20249308,20248863-20248918,20248707-20248781,20248530-20248622,20248142-20248381,20247979-20248051,20247765-20247865,20247587-20247672,20247433-20247508,20247287-20247354,20247156-20247222,20246981-20247076,20246807-20246909,20246610-20246705,20246460-20246530	AT1G54220.1  CDS  gene_syn F20D21.4, F20D21_4  go_component mitochondrion|GO:0005739|18385124|IDA  go_process acetyl-CoA biosynthetic process from pyruvate|GO:0006086||IEA  go_process pyruvate metabolic process|GO:0006090||IEA  go_process metabolic process|GO:0008152||IEA  go_function dihydrolipoyllysine-residue acetyltransferase activity|GO:0004742||IEA  go_function protein binding|GO:0005515||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|14764908|IDA  go_function dihydrolipoyllysine-residue acetyltransferase activity|GO:0004742||ISS  product dihydrolipoamide S-acetyltransferase, putative  note dihydrolipoamide S-acetyltransferase, putative; FUNCTIONS IN: dihydrolipoyllysine-residue acetyltransferase activity, protein binding, acyltransferase activity; INVOLVED IN: pyruvate metabolic process, metabolic process, acetyl-CoA biosynthetic process from pyruvate; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), Dihydrolipoamide acetyltransferase, long form (InterPro:IPR006257), E3 binding (InterPro:IPR004167), 2-oxoacid dehydrogenase acyltransferase, catalytic domain (InterPro:IPR001078), Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: dihydrolipoamide S-acetyltransferase, putative (TAIR:AT3G13930.1); Has 15294 Blast hits to 14281 proteins in 1321 species: Archae - 41; Bacteria - 6441; Metazoa - 656; Fungi - 323; Plants - 199; Viruses - 0; Other Eukaryotes - 7634 (source: NCBI BLink).  protein_id AT1G54220.1p  transcript_id AT1G54220.1  protein_id AT1G54220.1p  transcript_id AT1G54220.1  
At1g54220	chr1:020250170	0.0	C/20250170-20250208,20249793-20249883,20249610-20249674,20249418-20249503,20249271-20249308,20248863-20248918,20248707-20248781,20248530-20248622,20248142-20248381,20247979-20248051,20247765-20247865,20247587-20247672,20247433-20247508,20247287-20247354,20247156-20247222,20246981-20247076,20246807-20246909,20246610-20246705,20246460-20246530	AT1G54220.2  CDS  gene_syn F20D21.4, F20D21_4  go_component mitochondrion|GO:0005739|18385124|IDA  go_process pyruvate metabolic process|GO:0006090||IEA  go_process metabolic process|GO:0008152||IEA  go_function dihydrolipoyllysine-residue acetyltransferase activity|GO:0004742||IEA  go_function protein binding|GO:0005515||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|14764908|IDA  go_function dihydrolipoyllysine-residue acetyltransferase activity|GO:0004742||ISS  product dihydrolipoamide S-acetyltransferase, putative  note dihydrolipoamide S-acetyltransferase, putative; FUNCTIONS IN: dihydrolipoyllysine-residue acetyltransferase activity, protein binding, acyltransferase activity; INVOLVED IN: pyruvate metabolic process, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), Dihydrolipoamide acetyltransferase, long form (InterPro:IPR006257), E3 binding (InterPro:IPR004167), 2-oxoacid dehydrogenase acyltransferase, catalytic domain (InterPro:IPR001078), Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: dihydrolipoamide S-acetyltransferase, putative (TAIR:AT3G13930.1); Has 15294 Blast hits to 14281 proteins in 1321 species: Archae - 41; Bacteria - 6441; Metazoa - 656; Fungi - 323; Plants - 199; Viruses - 0; Other Eukaryotes - 7634 (source: NCBI BLink).  protein_id AT1G54220.2p  transcript_id AT1G54220.2  protein_id AT1G54220.2p  transcript_id AT1G54220.2  
At1g54230	chr1:020250954	0.0	W/20250954-20250985,20251073-20251178,20251319-20251402,20251500-20251728,20251817-20252032,20252120-20252151	AT1G54230.1  CDS  gene_syn F20D21.5, F20D21_5  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: sperm cell, leaf whorl, flower, pollen tube; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT1G54240.1); Has 44 Blast hits to 44 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G54230.1p  transcript_id AT1G54230.1  protein_id AT1G54230.1p  transcript_id AT1G54230.1  
At1g54240	chr1:020253088	0.0	W/20253088-20253134,20253247-20253300,20253397-20253453,20253549-20253642,20253885-20253968,20254066-20254387,20254463-20254494	AT1G54240.1  CDS  gene_syn F20D21.6, F20D21_6  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT1G54230.1); Has 72 Blast hits to 72 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G54240.1p  transcript_id AT1G54240.1  protein_id AT1G54240.1p  transcript_id AT1G54240.1  
At1g54250	chr1:020255210	0.0	W/20255210-20255288,20255544-20255701,20256025-20256116,20256224-20256335	AT1G54250.1  CDS  gene_syn ATRPABC16.5, F20D21.7, F20D21_7, NRPB8A, NRPE8A, RNA POLYMERASE I, II AND III 16.5 KDA SUBUNIT  gene NRPB8A  function One of two highly similar proteins that can serve as non-catalytic subunits of Nuclear RNA polymerases II and V; homologous to budding yeast RPB8. Probably redundant with At3g59600.  go_process transcription|GO:0006350||IEA  go_component DNA-directed RNA polymerase II, core complex|GO:0005665|19110459|IPI  go_process transcription|GO:0006350||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product NRPB8A; DNA-directed RNA polymerase  note NRPB8A; FUNCTIONS IN: DNA-directed RNA polymerase activity; INVOLVED IN: transcription; LOCATED IN: DNA-directed RNA polymerase II, core complex; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), RNA polymerase, Rpb8 (InterPro:IPR005570); BEST Arabidopsis thaliana protein match is: NRPB8B; DNA-directed RNA polymerase (TAIR:AT3G59600.1); Has 356 Blast hits to 354 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 133; Plants - 46; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT1G54250.1p  transcript_id AT1G54250.1  protein_id AT1G54250.1p  transcript_id AT1G54250.1  
At1g54260	chr1:020257340	0.0	W/20257340-20257356,20257432-20257516,20258153-20258236,20258384-20258477,20258669-20258751,20258864-20259062,20259145-20259176	AT1G54260.1  CDS  gene_syn F20D21.8, F20D21_8  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_component nucleosome|GO:0000786||ISS  go_process nucleosome assembly|GO:0006334||ISS  go_function DNA binding|GO:0003677||ISS  product histone H1/H5 family protein  note histone H1/H5 family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: DNA-binding family protein / histone H1/H5 family protein (TAIR:AT1G72740.2); Has 265 Blast hits to 265 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 265; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G54260.1p  transcript_id AT1G54260.1  protein_id AT1G54260.1p  transcript_id AT1G54260.1  
At1g54270	chr1:020260495	0.0	W/20260495-20260562,20260649-20260752,20260862-20261292,20261383-20262018	AT1G54270.1  CDS  gene_syn EIF4A-2, F20D21.9, F20D21_9  gene EIF4A-2  function member of eIF4A - eukaryotic initiation factor 4A  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytosol|GO:0005829|18433157|IDA  go_function translation initiation factor activity|GO:0003743||ISS  go_function ATP-dependent helicase activity|GO:0008026||ISS  product EIF4A-2; ATP-dependent helicase/ translation initiation factor  note EIF4A-2; FUNCTIONS IN: translation initiation factor activity, ATP-dependent helicase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1); ATP-dependent helicase/ translation initiation factor (TAIR:AT3G13920.1); Has 31059 Blast hits to 30635 proteins in 1779 species: Archae - 450; Bacteria - 13871; Metazoa - 4985; Fungi - 3344; Plants - 1380; Viruses - 16; Other Eukaryotes - 7013 (source: NCBI BLink).  protein_id AT1G54270.1p  transcript_id AT1G54270.1  protein_id AT1G54270.1p  transcript_id AT1G54270.1  
At1g54280	chr1:020265459	0.0	C/20265459-20267293,20265267-20265377,20264908-20265184,20264732-20264820,20264533-20264620,20264230-20264439,20264017-20264142,20263831-20263929,20263555-20263746,20262766-20263461	AT1G54280.1  CDS  gene_syn F20D21.10, F20D21_10  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process ATP biosynthetic process|GO:0006754||IEA  go_process phospholipid transport|GO:0015914||IEA  go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662||ISS  product haloacid dehalogenase-like hydrolase family protein  note haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: phospholipid transport, ATP biosynthetic process; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, P-type, phospholipid-translocating, flippase (InterPro:IPR006539), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type phosphorylation site (InterPro:IPR018303), HAD superfamily hydrolase-like, type 3 (InterPro:IPR013200); BEST Arabidopsis thaliana protein match is: ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism (TAIR:AT3G13900.1); Has 8379 Blast hits to 7237 proteins in 890 species: Archae - 82; Bacteria - 1783; Metazoa - 3022; Fungi - 1368; Plants - 513; Viruses - 3; Other Eukaryotes - 1608 (source: NCBI BLink).  protein_id AT1G54280.1p  transcript_id AT1G54280.1  protein_id AT1G54280.1p  transcript_id AT1G54280.1  
At1g54290	chr1:020269354	0.0	C/20269354-20269390,20269000-20269205,20268865-20268918,20268710-20268754	AT1G54290.1  CDS  gene_syn F20D21.11, F20D21_11  go_process translation|GO:0006412||IEA  go_process translational initiation|GO:0006413||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_component cellular_component|GO:0005575||ND  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product eukaryotic translation initiation factor SUI1, putative  note eukaryotic translation initiation factor SUI1, putative; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation, translation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor SUI1 (InterPro:IPR001950), Eukaryotic translation initiation factor SUI1 (InterPro:IPR005874); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor SUI1, putative (TAIR:AT4G27130.1); Has 617 Blast hits to 614 proteins in 200 species: Archae - 6; Bacteria - 1; Metazoa - 295; Fungi - 106; Plants - 120; Viruses - 3; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT1G54290.1p  transcript_id AT1G54290.1  protein_id AT1G54290.1p  transcript_id AT1G54290.1  
At1g54300	chr1:020270810	0.0	W/20270810-20271049,20271126-20271235,20271322-20271536,20271630-20272009	AT1G54300.1  CDS  gene_syn F20D21.12, F20D21_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05770.1); Has 51 Blast hits to 51 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G54300.1p  transcript_id AT1G54300.1  protein_id AT1G54300.1p  transcript_id AT1G54300.1  
At1g54310	chr1:020273567	0.0	W/20273567-20273708,20273780-20274005,20274088-20274222,20274313-20274535,20274642-20274828,20274905-20275089,20275183-20275449	AT1G54310.2  CDS  gene_syn F20D21.13, F20D21_13  go_component plasma membrane|GO:0005886|17317660|IDA  go_function RNA binding|GO:0003723||IEA  product RNA binding  note RNA binding; FUNCTIONS IN: RNA binding; LOCATED IN: plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: PUA (InterPro:IPR002478); Has 3651 Blast hits to 3638 proteins in 946 species: Archae - 69; Bacteria - 3053; Metazoa - 33; Fungi - 6; Plants - 28; Viruses - 0; Other Eukaryotes - 462 (source: NCBI BLink).  protein_id AT1G54310.2p  transcript_id AT1G54310.2  protein_id AT1G54310.2p  transcript_id AT1G54310.2  
At1g54310	chr1:020273618	0.0	W/20273618-20273708,20273780-20274005,20274088-20274222,20274313-20274561,20274642-20274678	AT1G54310.1  CDS  gene_syn F20D21.13, F20D21_13  go_component plasma membrane|GO:0005886|17317660|IDA  go_function RNA binding|GO:0003723||IEA  product RNA binding  note RNA binding; FUNCTIONS IN: RNA binding; LOCATED IN: plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: PUA (InterPro:IPR002478); Has 1177 Blast hits to 1177 proteins in 548 species: Archae - 25; Bacteria - 1022; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).  protein_id AT1G54310.1p  transcript_id AT1G54310.1  protein_id AT1G54310.1p  transcript_id AT1G54310.1  
At1g54320	chr1:020277706	0.0	C/20277706-20277793,20277404-20277462,20277228-20277302,20277037-20277150,20276867-20276937,20276374-20276671,20275977-20276266,20275732-20275786	AT1G54320.1  CDS  gene_syn F20D21.14, F20D21_14  go_component chloroplast|GO:0009507||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  product LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein  note LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF284, transmembrane eukaryotic (InterPro:IPR005045); BEST Arabidopsis thaliana protein match is: ALIS1 (ALA-INTERACTING SUBUNIT 1); phospholipid transporter (TAIR:AT3G12740.1); Has 648 Blast hits to 646 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 218; Fungi - 139; Plants - 105; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).  protein_id AT1G54320.1p  transcript_id AT1G54320.1  protein_id AT1G54320.1p  transcript_id AT1G54320.1  
At1g54330	chr1:020280733	0.0	C/20280733-20280889,20280312-20280580,20279715-20280194	AT1G54330.1  CDS  gene_syn ANAC020, Arabidopsis NAC domain containing protein 20, F20D21.15, F20D21_15  gene ANAC020  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ANAC020 (Arabidopsis NAC domain containing protein 20); transcription factor  note Arabidopsis NAC domain containing protein 20 (ANAC020); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac057 (Arabidopsis NAC domain containing protein 57); transcription factor (TAIR:AT3G17730.1); Has 1643 Blast hits to 1640 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1643; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G54330.1p  transcript_id AT1G54330.1  protein_id AT1G54330.1p  transcript_id AT1G54330.1  
At1g54340	chr1:020283520	0.0	W/20283520-20283568,20283766-20283809,20283889-20283998,20284156-20284193,20284279-20284356,20284436-20284489,20284584-20284685,20284831-20284919,20285020-20285123,20285227-20285295,20285373-20285488,20285657-20285691,20285797-20285939,20286198-20286320,20286410-20286506	AT1G54340.1  CDS  gene_syn F20D21.16, F20D21_16, ICDH, ISOCITRATE DEHYDROGENASE  gene ICDH  function NADP-specific isocitrate dehydrogenase (ICDH)  go_component peroxisome|GO:0005777|17951448|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process isocitrate metabolic process|GO:0006102||IEA  go_process metabolic process|GO:0008152||IEA  go_function isocitrate dehydrogenase (NADP+) activity|GO:0004450||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_process metabolic process|GO:0008152||ISS  go_function isocitrate dehydrogenase (NADP+) activity|GO:0004450||ISS  product ICDH (ISOCITRATE DEHYDROGENASE); isocitrate dehydrogenase (NADP+)/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor  note ISOCITRATE DEHYDROGENASE (ICDH); FUNCTIONS IN: isocitrate dehydrogenase (NADP+) activity, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; INVOLVED IN: isocitrate metabolic process, metabolic process; LOCATED IN: peroxisome, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804), Isocitrate dehydrogenase NADP-dependent, eukaryotic (InterPro:IPR004790); BEST Arabidopsis thaliana protein match is: isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative (TAIR:AT1G65930.1); Has 4016 Blast hits to 3999 proteins in 644 species: Archae - 37; Bacteria - 694; Metazoa - 417; Fungi - 156; Plants - 232; Viruses - 0; Other Eukaryotes - 2480 (source: NCBI BLink).  protein_id AT1G54340.1p  transcript_id AT1G54340.1  protein_id AT1G54340.1p  transcript_id AT1G54340.1  
At1g54350	chr1:020286917	0.0	W/20286917-20287268,20287354-20287421,20287498-20287824,20287919-20288083,20288168-20288396,20288979-20289220,20289298-20289574,20289697-20289947,20290036-20290245	AT1G54350.1  CDS  gene_syn F20D21.17, F20D21_17  go_component chloroplast|GO:0009507|18431481|IDA  go_process transport|GO:0006810||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|11706205|ISS  product ABC transporter family protein  note ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter, N-terminal (InterPro:IPR010509), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PXA1 (PEROXISOMAL ABC TRANSPORTER 1); ATPase, coupled to transmembrane movement of substances (TAIR:AT4G39850.1); Has 114404 Blast hits to 111566 proteins in 2228 species: Archae - 1855; Bacteria - 81345; Metazoa - 3775; Fungi - 2119; Plants - 1238; Viruses - 3; Other Eukaryotes - 24069 (source: NCBI BLink).  protein_id AT1G54350.1p  transcript_id AT1G54350.1  protein_id AT1G54350.1p  transcript_id AT1G54350.1  
At1g54355	chr1:020288804	0.0	C/20288804-20290316	AT1G54355.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G54350  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G54355.1  
At1g54360	chr1:020290600	0.0	W/20290600-20290719,20290789-20291036,20291124-20291230,20291302-20291378,20291458-20291595,20291688-20291783,20291880-20292004,20292088-20292220,20292431-20292556,20292661-20292772,20292862-20293160	AT1G54360.4  CDS  gene_syn F20D21.18, F20D21_18, TAF6B, TAF6B1, TAF6B2, TAF6B3, TAF6B4, TBP-ASSOCIATED FACTOR 6B, TBP-ASSOCIATED FACTOR 6B1, TBP-ASSOCIATED FACTOR 6B2, TBP-ASSOCIATED FACTOR 6B3, TBP-ASSOCIATED FACTOR 6B4  gene TAF6B4  function Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6.  go_component nucleus|GO:0005634||IEA  go_process transcription initiation|GO:0006352||IEA  go_process regulation of transcription factor activity|GO:0051090||IEA  go_function DNA binding|GO:0003677||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  go_function transcription initiation factor activity|GO:0016986||IEA  product TAF6B4 (TBP-ASSOCIATED FACTOR 6B4); DNA binding / RNA polymerase II transcription factor/ transcription initiation factor  note TBP-ASSOCIATED FACTOR 6B4 (TAF6B4); FUNCTIONS IN: RNA polymerase II transcription factor activity, DNA binding, transcription initiation factor activity; INVOLVED IN: regulation of transcription factor activity, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1546 (InterPro:IPR011442), Histone-fold (InterPro:IPR009072), TATA box binding protein associated factor (TAF) (InterPro:IPR004823); BEST Arabidopsis thaliana protein match is: TAF6 (TBP-ASSOCIATED FACTOR 6); DNA binding / RNA polymerase II transcription factor/ transcription initiation factor (TAIR:AT1G04950.3); Has 361 Blast hits to 357 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 179; Fungi - 92; Plants - 39; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT1G54360.4p  transcript_id AT1G54360.4  protein_id AT1G54360.4p  transcript_id AT1G54360.4  
At1g54360	chr1:020290838	0.0	W/20290838-20290875,20290944-20291036,20291124-20291230,20291302-20291357,20291458-20291595,20291688-20291783,20291880-20292004,20292088-20292220,20292431-20292556,20292661-20292772,20292862-20293160	AT1G54360.3  CDS  gene_syn F20D21.18, F20D21_18, TAF6B, TAF6B1, TAF6B2, TAF6B3, TAF6B4, TBP-ASSOCIATED FACTOR 6B, TBP-ASSOCIATED FACTOR 6B1, TBP-ASSOCIATED FACTOR 6B2, TBP-ASSOCIATED FACTOR 6B3, TBP-ASSOCIATED FACTOR 6B4  gene TAF6B4  function Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription factor activity|GO:0051090||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  go_function transcription initiation factor activity|GO:0016986||IEA  product TAF6B4 (TBP-ASSOCIATED FACTOR 6B4); RNA polymerase II transcription factor/ transcription initiation factor  note TBP-ASSOCIATED FACTOR 6B2 (TAF6B2); FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity; INVOLVED IN: regulation of transcription factor activity; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1546 (InterPro:IPR011442); BEST Arabidopsis thaliana protein match is: TAF6 (TBP-ASSOCIATED FACTOR 6); DNA binding / RNA polymerase II transcription factor/ transcription initiation factor (TAIR:AT1G04950.3); Has 333 Blast hits to 333 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 170; Fungi - 90; Plants - 37; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT1G54360.3p  transcript_id AT1G54360.3  protein_id AT1G54360.3p  transcript_id AT1G54360.3  
At1g54360	chr1:020290838	0.0	W/20290838-20290875,20290944-20291036,20291124-20291230,20291302-20291378,20291458-20291595,20291688-20291783,20291880-20292004,20292088-20292220,20292431-20292556,20292661-20292772,20292862-20293160	AT1G54360.1  CDS  gene_syn F20D21.18, F20D21_18, TAF6B, TAF6B1, TAF6B2, TAF6B3, TAF6B4, TBP-ASSOCIATED FACTOR 6B, TBP-ASSOCIATED FACTOR 6B1, TBP-ASSOCIATED FACTOR 6B2, TBP-ASSOCIATED FACTOR 6B3, TBP-ASSOCIATED FACTOR 6B4  gene TAF6B4  function Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription factor activity|GO:0051090||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  go_function transcription initiation factor activity|GO:0016986||IEA  product TAF6B4 (TBP-ASSOCIATED FACTOR 6B4); RNA polymerase II transcription factor/ transcription initiation factor  note TBP-ASSOCIATED FACTOR 6B1 (TAF6B1); FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity; INVOLVED IN: regulation of transcription factor activity; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1546 (InterPro:IPR011442); BEST Arabidopsis thaliana protein match is: TAF6 (TBP-ASSOCIATED FACTOR 6); DNA binding / RNA polymerase II transcription factor/ transcription initiation factor (TAIR:AT1G04950.3); Has 335 Blast hits to 335 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 170; Fungi - 90; Plants - 37; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT1G54360.1p  transcript_id AT1G54360.1  protein_id AT1G54360.1p  transcript_id AT1G54360.1  
At1g54360	chr1:020290838	0.0	W/20290838-20290875,20290944-20291036,20291124-20291230,20291302-20291378,20291458-20291595,20291688-20291783,20291880-20292004,20292088-20292220,20292431-20292556,20292661-20292772,20292862-20293160	AT1G54360.2  CDS  gene_syn F20D21.18, F20D21_18, TAF6B, TAF6B1, TAF6B2, TAF6B3, TAF6B4, TBP-ASSOCIATED FACTOR 6B, TBP-ASSOCIATED FACTOR 6B1, TBP-ASSOCIATED FACTOR 6B2, TBP-ASSOCIATED FACTOR 6B3, TBP-ASSOCIATED FACTOR 6B4  gene TAF6B4  function Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription factor activity|GO:0051090||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  go_function transcription initiation factor activity|GO:0016986||IEA  product TAF6B4 (TBP-ASSOCIATED FACTOR 6B4); RNA polymerase II transcription factor/ transcription initiation factor  note TBP-ASSOCIATED FACTOR 6B (TAF6B); FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity; INVOLVED IN: regulation of transcription factor activity; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1546 (InterPro:IPR011442); BEST Arabidopsis thaliana protein match is: TAF6 (TBP-ASSOCIATED FACTOR 6); DNA binding / RNA polymerase II transcription factor/ transcription initiation factor (TAIR:AT1G04950.3); Has 335 Blast hits to 335 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 170; Fungi - 90; Plants - 37; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT1G54360.2p  transcript_id AT1G54360.2  protein_id AT1G54360.2p  transcript_id AT1G54360.2  
At1g54370	chr1:020296946	0.0	C/20296946-20297129,20296805-20296856,20296662-20296721,20296535-20296559,20296375-20296460,20296185-20296296,20296014-20296076,20295873-20295892,20295693-20295790,20295245-20295273,20295132-20295163,20294972-20295019,20294825-20294885,20294635-20294732,20294466-20294541,20294345-20294364,20294149-20294246,20293944-20294053,20293734-20293817,20293529-20293650,20293353-20293440	AT1G54370.1  CDS  gene_syn ATNHX5, F20D21.19, F20D21_19, NA+/H+ ANTIPORTER 5, NHX5  gene NHX5  go_component integral to membrane|GO:0016021||IEA  go_process sodium ion transport|GO:0006814|9990049|IGI  go_process sodium ion transport|GO:0006814||ISS  go_process lithium ion transport|GO:0010351|9990049|IGI  go_function sodium ion transmembrane transporter activity|GO:0015081|9990049|IGI  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product NHX5; sodium ion transmembrane transporter/ sodium:hydrogen antiporter  note NHX5; FUNCTIONS IN: sodium:hydrogen antiporter activity, sodium ion transmembrane transporter activity; INVOLVED IN: lithium ion transport, sodium ion transport; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Na+/H+ exchanger, subfamily (InterPro:IPR004709), Na+/H+ exchanger, isoform 5/6/8, conserved region (InterPro:IPR018409), Cation/H+ exchanger, conserved region (InterPro:IPR018422), Cation/H+ exchanger (InterPro:IPR006153), Na+/H+ exchanger, conserved region (InterPro:IPR018406); BEST Arabidopsis thaliana protein match is: sodium proton exchanger, putative (NHX6) (TAIR:AT1G79610.1); Has 4120 Blast hits to 4115 proteins in 1050 species: Archae - 70; Bacteria - 2497; Metazoa - 747; Fungi - 105; Plants - 279; Viruses - 0; Other Eukaryotes - 422 (source: NCBI BLink).  protein_id AT1G54370.1p  transcript_id AT1G54370.1  protein_id AT1G54370.1p  transcript_id AT1G54370.1  
At1g54380	chr1:020300122	0.0	C/20300122-20300899,20299082-20299244,20298811-20298991,20298287-20298712	AT1G54380.1  CDS  gene_syn F20D21.20, F20D21_20  go_process spliceosome assembly|GO:0000245||IEA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product spliceosome protein-related  note spliceosome protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Survival motor neuron interacting protein 1 (InterPro:IPR007022); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42510.2); Has 163 Blast hits to 151 proteins in 52 species: Archae - 0; Bacteria - 5; Metazoa - 83; Fungi - 4; Plants - 23; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT1G54380.1p  transcript_id AT1G54380.1  protein_id AT1G54380.1p  transcript_id AT1G54380.1  
At1g54385	chr1:020301765	0.0	C/20301765-20303048,20301289-20301687	AT1G54385.1  CDS  go_process spliceosome assembly|GO:0000245||IEA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), Survival motor neuron interacting protein 1 (InterPro:IPR007022); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT3G03970.3); Has 62 Blast hits to 60 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G54385.1p  transcript_id AT1G54385.1  protein_id AT1G54385.1p  transcript_id AT1G54385.1  
At1g54385	chr1:020301765	0.0	C/20301765-20303048,20301289-20301687	AT1G54385.2  CDS  go_process spliceosome assembly|GO:0000245||IEA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), Survival motor neuron interacting protein 1 (InterPro:IPR007022); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT3G03970.3); Has 62 Blast hits to 60 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G54385.2p  transcript_id AT1G54385.2  protein_id AT1G54385.2p  transcript_id AT1G54385.2  
At1g54390	chr1:020306424	0.0	C/20306424-20306510,20306153-20306216,20305379-20305623,20305255-20305293,20305061-20305171	AT1G54390.6  CDS  gene_syn F20D21.22, F20D21_22, ING2, INHIBITOR OF GROWTH 2  gene ING2  function ING2 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.  go_component nucleus|GO:0005634|19154204|IDA  go_function methylated histone residue binding|GO:0035064|19154204|IDA  product PHD finger protein-related  note INHIBITOR OF GROWTH 2 (ING2); FUNCTIONS IN: methylated histone residue binding; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: ING1 (INHIBITOR OF GROWTH 1); DNA binding / methylated histone residue binding (TAIR:AT3G24010.1).  protein_id AT1G54390.6p  transcript_id AT1G54390.6  protein_id AT1G54390.6p  transcript_id AT1G54390.6  
At1g54390	chr1:020306424	0.0	C/20306424-20306693,20306153-20306216,20305379-20305623,20305255-20305293,20305061-20305171	AT1G54390.5  CDS  gene_syn F20D21.22, F20D21_22, ING2, INHIBITOR OF GROWTH 2  gene ING2  function ING2 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.  go_component nucleus|GO:0005634|19154204|IDA  go_function methylated histone residue binding|GO:0035064|19154204|IDA  product PHD finger protein-related  note INHIBITOR OF GROWTH 2 (ING2); FUNCTIONS IN: methylated histone residue binding; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: ING1 (INHIBITOR OF GROWTH 1); DNA binding / methylated histone residue binding (TAIR:AT3G24010.1); Has 1097 Blast hits to 1037 proteins in 132 species: Archae - 2; Bacteria - 0; Metazoa - 708; Fungi - 285; Plants - 48; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT1G54390.5p  transcript_id AT1G54390.5  protein_id AT1G54390.5p  transcript_id AT1G54390.5  
At1g54390	chr1:020306898	0.0	C/20306898-20306943,20306727-20306798,20306424-20306635,20306153-20306216,20305379-20305623,20305012-20305293	AT1G54390.1  CDS  gene_syn F20D21.22, F20D21_22, ING2, INHIBITOR OF GROWTH 2  gene ING2  function ING2 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.  go_component nucleus|GO:0005634|19154204|IDA  go_function methylated histone residue binding|GO:0035064|19154204|IDA  product PHD finger protein-related  note INHIBITOR OF GROWTH 2 (ING2); FUNCTIONS IN: methylated histone residue binding; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: ING1 (INHIBITOR OF GROWTH 1); DNA binding / methylated histone residue binding (TAIR:AT3G24010.1); Has 827 Blast hits to 709 proteins in 113 species: Archae - 2; Bacteria - 0; Metazoa - 625; Fungi - 111; Plants - 53; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT1G54390.1p  transcript_id AT1G54390.1  protein_id AT1G54390.1p  transcript_id AT1G54390.1  
At1g54390	chr1:020306898	0.0	C/20306898-20306943,20306727-20306798,20306424-20306635,20306153-20306216,20305379-20305623,20305039-20305293,20304833-20304925	AT1G54390.2  CDS  gene_syn F20D21.22, F20D21_22, ING2, INHIBITOR OF GROWTH 2  gene ING2  function ING2 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.  go_component nucleus|GO:0005634|19154204|IDA  go_function methylated histone residue binding|GO:0035064|19154204|IDA  product PHD finger protein-related  note INHIBITOR OF GROWTH 2 (ING2); FUNCTIONS IN: methylated histone residue binding; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: ING1 (INHIBITOR OF GROWTH 1); DNA binding / methylated histone residue binding (TAIR:AT3G24010.1); Has 827 Blast hits to 709 proteins in 113 species: Archae - 2; Bacteria - 0; Metazoa - 625; Fungi - 111; Plants - 53; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT1G54390.2p  transcript_id AT1G54390.2  protein_id AT1G54390.2p  transcript_id AT1G54390.2  
At1g54390	chr1:020306898	0.0	C/20306898-20306943,20306727-20306798,20306424-20306635,20306153-20306216,20305379-20305623,20305255-20305293,20305061-20305171	AT1G54390.3  CDS  gene_syn F20D21.22, F20D21_22, ING2, INHIBITOR OF GROWTH 2  gene ING2  function ING2 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.  go_component nucleus|GO:0005634|19154204|IDA  go_function methylated histone residue binding|GO:0035064|19154204|IDA  product PHD finger protein-related  note INHIBITOR OF GROWTH 2 (ING2); FUNCTIONS IN: methylated histone residue binding; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: ING1 (INHIBITOR OF GROWTH 1); DNA binding / methylated histone residue binding (TAIR:AT3G24010.1); Has 1185 Blast hits to 1059 proteins in 133 species: Archae - 2; Bacteria - 0; Metazoa - 780; Fungi - 290; Plants - 53; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT1G54390.3p  transcript_id AT1G54390.3  protein_id AT1G54390.3p  transcript_id AT1G54390.3  
At1g54390	chr1:020306898	0.0	C/20306898-20306943,20306727-20306798,20306424-20306635,20306153-20306216,20305379-20305623,20305255-20305293,20305061-20305171	AT1G54390.4  CDS  gene_syn F20D21.22, F20D21_22, ING2, INHIBITOR OF GROWTH 2  gene ING2  function ING2 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.  go_component nucleus|GO:0005634|19154204|IDA  go_function methylated histone residue binding|GO:0035064|19154204|IDA  product PHD finger protein-related  note INHIBITOR OF GROWTH 2 (ING2); FUNCTIONS IN: methylated histone residue binding; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: ING1 (INHIBITOR OF GROWTH 1); DNA binding / methylated histone residue binding (TAIR:AT3G24010.1); Has 1185 Blast hits to 1059 proteins in 133 species: Archae - 2; Bacteria - 0; Metazoa - 780; Fungi - 290; Plants - 53; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT1G54390.4p  transcript_id AT1G54390.4  protein_id AT1G54390.4p  transcript_id AT1G54390.4  
At1g54400	chr1:020307667	0.0	W/20307667-20307778,20308329-20308768	AT1G54400.1  CDS  gene_syn F20D21.40, F20D21_40  go_component cellular_component|GO:0005575||ND  go_process response to heat|GO:0009408||ISS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to heat; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: heat shock family protein (TAIR:AT2G27140.1); Has 35 Blast hits to 35 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G54400.1p  transcript_id AT1G54400.1  protein_id AT1G54400.1p  transcript_id AT1G54400.1  
At1g54410	chr1:020310305	0.0	C/20310305-20310601	AT1G54410.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_process response to stress|GO:0006950||IEA  go_process response to water|GO:0009415||IEA  go_process response to stress|GO:0006950||ISS  go_process response to water|GO:0009415||ISS  go_function molecular_function|GO:0003674||ND  product dehydrin family protein  note dehydrin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to water, response to stress; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); Has 570 Blast hits to 469 proteins in 114 species: Archae - 0; Bacteria - 12; Metazoa - 159; Fungi - 66; Plants - 127; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).  protein_id AT1G54410.1p  transcript_id AT1G54410.1  protein_id AT1G54410.1p  transcript_id AT1G54410.1  
At1g54420	chr1:020311619	0.0	W/20311619-20311638,20312076-20312418	AT1G54420.1  CDS  gene_syn F20D21.41, F20D21_41  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 10 Blast hits to 8 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G54420.1p  transcript_id AT1G54420.1  protein_id AT1G54420.1p  transcript_id AT1G54420.1  
At1g54430	chr1:020313856	0.0	C/20313856-20319554	AT1G54430.1  mRNA_TE_gene  pseudo  gene_syn F20D21.25, F20D21_25  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13250.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30420.1); similar to AT hook motif-containing protein-related [Arabidopsis thaliana] (TAIR:AT3G42100.1); similar to AT hook motif-containing protein, putative [Oryza sativa (japonica cultivar-group)] (GB:ABA94947.1); similar to Protein of unknown function DUF889, eukaryote [Medicago truncatula] (GB:ABE82731.1); similar to putative helicase [Oryza sativa (japonica cultivar-group)] (GB:AAV44035.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Protein of unknown function DUF889, eukaryote; (InterPro:IPR010285)  
At1g54440	chr1:020323284	0.0	W/20323284-20323541,20323677-20323832,20324089-20324247,20324331-20324414,20324733-20324812,20324907-20324957,20325040-20325148,20325598-20325680,20325887-20325932,20326025-20326112,20326199-20326368,20326798-20326956,20327360-20327518,20327620-20327931	AT1G54440.1  CDS  gene_syn F20D21.26, F20D21_26  go_component intracellular|GO:0005622||IEA  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function 3 -5  exonuclease activity|GO:0008408||IEA  go_component intracellular|GO:0005622||ISS  go_function nucleic acid binding|GO:0003676||ISS  go_function 3 -5  exonuclease activity|GO:0008408||ISS  product 3 -5  exonuclease/ nucleic acid binding  note 3 -5  exonuclease/ nucleic acid binding; FUNCTIONS IN: 3 -5  exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Helicase and RNase D C-terminal, HRDC (InterPro:IPR002121), 3&apos;-5&apos; exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: 3 -5  exonuclease domain-containing protein / helicase and RNase D C-terminal domain-containing protein / HRDC domain-containing protein (TAIR:AT5G35910.1); Has 3579 Blast hits to 3515 proteins in 802 species: Archae - 0; Bacteria - 1503; Metazoa - 361; Fungi - 188; Plants - 128; Viruses - 0; Other Eukaryotes - 1399 (source: NCBI BLink).  protein_id AT1G54440.1p  transcript_id AT1G54440.1  protein_id AT1G54440.1p  transcript_id AT1G54440.1  
At1g54445	chr1:020332428	0.0	W/20332428-20332509,20332708-20332862	AT1G54445.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: LCR47 (Low-molecular-weight cysteine-rich 47) (TAIR:AT3G42473.1); Has 11 Blast hits to 11 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G54445.1p  transcript_id AT1G54445.1  protein_id AT1G54445.1p  transcript_id AT1G54445.1  
At1g54450	chr1:020339404	0.0	C/20339404-20339535,20338794-20339042,20338583-20338688,20338403-20338502,20338158-20338263,20337915-20338005,20337602-20337743,20337374-20337521,20337175-20337284,20336799-20337081,20336570-20336710	AT1G54450.1  CDS  gene_syn F20D21.27, F20D21_27  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF-hand family protein  note calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, 4 leaf senescence stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT5G28850.2); Has 516 Blast hits to 514 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 282; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 166 (source: NCBI BLink).  protein_id AT1G54450.1p  transcript_id AT1G54450.1  protein_id AT1G54450.1p  transcript_id AT1G54450.1  
At1g54460	chr1:020342544	0.0	C/20342544-20342900,20342292-20342374,20342109-20342202,20341896-20341967,20341593-20341703,20340907-20341206	AT1G54460.1  CDS  gene_syn F20D21.28, F20D21_28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Targeting for Xklp2 (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: WDL1 (TAIR:AT3G04630.3); Has 393 Blast hits to 375 proteins in 76 species: Archae - 0; Bacteria - 3; Metazoa - 143; Fungi - 38; Plants - 160; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT1G54460.1p  transcript_id AT1G54460.1  protein_id AT1G54460.1p  transcript_id AT1G54460.1  
At1g54470	chr1:020344738	0.0	W/20344738-20345041,20345674-20346042,20346326-20346484,20346559-20346627,20346758-20346832,20346942-20347339	AT1G54470.1  CDS  gene_syn F20D21.44, F20D21_44, RPP27, resistance to Peronospora parasitica 27  gene RPP27  function Encodes a Cf-like gene in Arabidopsis that confers downy mildew resistance to several isolates of Peronospora parasitica.  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515|11751054|NAS  product RPP27 (resistance to Peronospora parasitica 27); protein binding  note resistance to Peronospora parasitica 27 (RPP27); FUNCTIONS IN: protein binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP14 (Receptor Like Protein 14); protein binding (TAIR:AT1G74180.1); Has 37789 Blast hits to 16468 proteins in 719 species: Archae - 24; Bacteria - 3345; Metazoa - 10640; Fungi - 622; Plants - 21286; Viruses - 57; Other Eukaryotes - 1815 (source: NCBI BLink).  protein_id AT1G54470.1p  transcript_id AT1G54470.1  protein_id AT1G54470.1p  transcript_id AT1G54470.1  
At1g54490	chr1:020350300	0.0	W/20350300-20350506,20351271-20351373,20351449-20351525,20351611-20351802,20351958-20352077,20352184-20352246,20352327-20352461,20352582-20352746,20352932-20353009,20353248-20353334,20353438-20353518,20353642-20353737,20354075-20354145,20354327-20354455,20354538-20354614,20354703-20354743,20354855-20354929,20355139-20355290,20355387-20355491,20355579-20355654,20355851-20355933,20356020-20356650	AT1G54490.1  CDS  gene_syn 5 -3  EXORIBONUCLEASE, ACC INSENSITIVE 1, AIN1, ATXRN4, EIN5, ETHYLENE INSENSITIVE 5, EXORIBONUCLEASE 4, F20D21.30, F20D21_30, XRN4  gene XRN4  function Involved in the ethylene response. XRN4 does not appear to regulate ethylene signaling via an RNA-INDUCED SILENCING COMPLEX-based RNA silencing mechanism but acts by independent means. Endogenous suppressor of posttranscriptional gene silencing.  go_component nucleus|GO:0005634|11106401|IDA  go_process nuclear-transcribed mRNA catabolic process, exonucleolytic|GO:0000291|15528448|IMP  go_process gravitropism|GO:0009630||IMP  go_process response to ethylene stimulus|GO:0009723||IMP  go_process unidimensional cell growth|GO:0009826||IMP  go_process ethylene mediated signaling pathway|GO:0009873|17085683|IGI  go_process ethylene mediated signaling pathway|GO:0009873||IMP  go_process response to 1-Aminocyclopropane-1-carboxylic Acid|GO:0009961||IMP  go_process miRNA catabolic process|GO:0010587|17993620|IMP  go_process deadenylation-independent decapping of nuclear-transcribed mRNA|GO:0031087|15528448|IMP  go_process regulation of gene expression, epigenetic|GO:0040029|16920797|IMP  go_function nucleic acid binding|GO:0003676||ISS  go_function 5 -3  exoribonuclease activity|GO:0004534|11106401|IGI  go_function 5 -3  exoribonuclease activity|GO:0004534|15528448|IMP  go_function 5 -3  exonuclease activity|GO:0008409||ISS  product XRN4 (EXORIBONUCLEASE 4); 5 -3  exonuclease/ 5 -3  exoribonuclease/ nucleic acid binding  note EXORIBONUCLEASE 4 (XRN4); FUNCTIONS IN: 5 -3  exoribonuclease activity, 5 -3  exonuclease activity, nucleic acid binding; INVOLVED IN: in 9 processes; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 5&apos;-3&apos; exoribonuclease 2 (InterPro:IPR017151), Zinc finger, CCHC-type (InterPro:IPR001878), Putative 5-3 exonuclease (InterPro:IPR004859); BEST Arabidopsis thaliana protein match is: XRN2 (EXORIBONUCLEASE 2); 5 -3  exonuclease/ 5 -3  exoribonuclease/ nucleic acid binding (TAIR:AT5G42540.1); Has 1407 Blast hits to 1131 proteins in 179 species: Archae - 0; Bacteria - 35; Metazoa - 252; Fungi - 382; Plants - 108; Viruses - 10; Other Eukaryotes - 620 (source: NCBI BLink).  protein_id AT1G54490.1p  transcript_id AT1G54490.1  protein_id AT1G54490.1p  transcript_id AT1G54490.1  
At1g54500	chr1:020357084	0.0	C/20357084-20357671	AT1G54500.1  CDS  gene_syn F20D21.31, F20D21_31  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_function electron carrier activity|GO:0009055||IEA  go_function metal ion binding|GO:0046872||IEA  go_function metal ion binding|GO:0046872||ISS  product rubredoxin family protein  note rubredoxin family protein; FUNCTIONS IN: electron carrier activity, metal ion binding; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rubredoxin, iron-binding site (InterPro:IPR018527), Rubredoxin-type Fe(Cys)4 protein (InterPro:IPR004039), Rubredoxin (InterPro:IPR001052); Has 2007 Blast hits to 1988 proteins in 612 species: Archae - 138; Bacteria - 1563; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 279 (source: NCBI BLink).  protein_id AT1G54500.1p  transcript_id AT1G54500.1  protein_id AT1G54500.1p  transcript_id AT1G54500.1  
At1g54510	chr1:020361921	0.0	C/20361921-20362006,20361765-20361831,20361622-20361687,20361490-20361536,20361343-20361388,20361179-20361259,20361054-20361096,20360926-20360975,20360747-20360828,20360153-20360202,20360001-20360074,20359873-20359924,20359378-20359791,20358603-20359283	AT1G54510.1  CDS  gene_syn ARABIDOPSIS THALIANA NIMA-RELATED SERINE/THREONINE KINASE 1, ATNEK1, F20D21.32, F20D21_32, NIMA-RELATED KINASE1  gene ATNEK1  function Encodes AtNEK1, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes.  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product ATNEK1 (ARABIDOPSIS THALIANA NIMA-RELATED SERINE/THREONINE KINASE 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note ARABIDOPSIS THALIANA NIMA-RELATED SERINE/THREONINE KINASE 1 (ATNEK1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATNEK2 (NIMA-RELATED KINASE 2); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT3G04810.2); Has 92496 Blast hits to 90762 proteins in 3171 species: Archae - 55; Bacteria - 7996; Metazoa - 40360; Fungi - 8213; Plants - 17877; Viruses - 447; Other Eukaryotes - 17548 (source: NCBI BLink).  protein_id AT1G54510.1p  transcript_id AT1G54510.1  protein_id AT1G54510.1p  transcript_id AT1G54510.1  
At1g54520	chr1:020363565	0.0	W/20363565-20364209,20364440-20364542,20365104-20365159,20365310-20365474,20365583-20365696,20365782-20365874	AT1G54520.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1517 (InterPro:IPR010903); Has 198 Blast hits to 197 proteins in 64 species: Archae - 0; Bacteria - 91; Metazoa - 6; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT1G54520.1p  transcript_id AT1G54520.1  protein_id AT1G54520.1p  transcript_id AT1G54520.1  
At1g54530	chr1:020366505	0.0	W/20366505-20366888	AT1G54530.1  CDS  gene_syn F20D21.45, F20D21_45  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT2G44310.1); Has 107 Blast hits to 105 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G54530.1p  transcript_id AT1G54530.1  protein_id AT1G54530.1p  transcript_id AT1G54530.1  
At1g54540	chr1:020367702	0.0	C/20367702-20368421	AT1G54540.1  CDS  gene_syn F20D21.35, F20D21_35  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: harpin-induced protein-related / HIN1-related / harpin-responsive protein-related (TAIR:AT1G65690.1); Has 612 Blast hits to 611 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 612; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G54540.1p  transcript_id AT1G54540.1  protein_id AT1G54540.1p  transcript_id AT1G54540.1  
At1g54550	chr1:020369689	0.0	W/20369689-20370777	AT1G54550.1  CDS  gene_syn F20D21.36, F20D21_36  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G49510.1); Has 599 Blast hits to 582 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 599; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G54550.1p  transcript_id AT1G54550.1  protein_id AT1G54550.1p  transcript_id AT1G54550.1  
At1g54560	chr1:020379734	0.0	C/20379734-20379745,20379494-20379622,20379264-20379407,20379038-20379183,20378801-20378957,20378626-20378684,20378381-20378540,20378156-20378305,20377940-20378076,20377717-20377863,20377514-20377615,20377371-20377428,20377181-20377282,20377028-20377065,20376810-20376936,20376536-20376706,20376335-20376466,20376118-20376227,20375972-20376032,20375702-20375879,20375339-20375544,20375131-20375250,20374848-20374946,20374536-20374757,20374232-20374371,20373995-20374106,20373852-20373899,20373496-20373750,20373250-20373405,20372970-20373164,20372736-20372879,20372579-20372649,20372343-20372499,20372194-20372250,20372035-20372115,20371872-20371954,20371649-20371772	AT1G54560.1  CDS  gene_syn ATXIE, MYOSIN XI E, T22H22.1, T22H22_1, XIE  gene XIE  function member of Myosin-like proteins  go_component myosin complex|GO:0016459|7811972|ISS  go_component myosin complex|GO:0016459||ISS  go_process actin filament-based movement|GO:0030048|11516337|TAS  go_function motor activity|GO:0003774|11516337|ISS  go_function motor activity|GO:0003774||ISS  go_function protein binding|GO:0005515||ISS  product XIE; motor/ protein binding  note XIE; FUNCTIONS IN: protein binding, motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: myosin complex; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor region (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: XIC; motor/ protein binding (TAIR:AT1G08730.1); Has 59617 Blast hits to 33842 proteins in 1721 species: Archae - 718; Bacteria - 5745; Metazoa - 32358; Fungi - 3797; Plants - 1722; Viruses - 246; Other Eukaryotes - 15031 (source: NCBI BLink).  protein_id AT1G54560.1p  transcript_id AT1G54560.1  protein_id AT1G54560.1p  transcript_id AT1G54560.1  
At1g54570	chr1:020384557	0.0	C/20384557-20384953,20384090-20384141,20383825-20383880,20383331-20383489,20383129-20383233,20382930-20383039,20382732-20382853,20382484-20382592,20382184-20382317,20381617-20381980,20381237-20381350,20381042-20381133,20380649-20380949	AT1G54570.1  CDS  gene_syn T22H22.2, T22H22_2  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component plastoglobule|GO:0010287|16461379|IDA  go_function catalytic activity|GO:0003824||ISS  product esterase/lipase/thioesterase family protein  note esterase/lipase/thioesterase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity; LOCATED IN: chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Diacylglycerol acyltransferase (InterPro:IPR007130); BEST Arabidopsis thaliana protein match is: esterase/lipase/thioesterase family protein (TAIR:AT3G26840.1); Has 434 Blast hits to 425 proteins in 124 species: Archae - 0; Bacteria - 193; Metazoa - 116; Fungi - 8; Plants - 74; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT1G54570.1p  transcript_id AT1G54570.1  protein_id AT1G54570.1p  transcript_id AT1G54570.1  
At1g54575	chr1:020387106	0.0	W/20387106-20387414	AT1G54575.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G54575.1p  transcript_id AT1G54575.1  protein_id AT1G54575.1p  transcript_id AT1G54575.1  
At1g54580	chr1:020389572	0.0	W/20389572-20389628,20389983-20390084,20390199-20390321,20390642-20390770	AT1G54580.1  CDS  gene_syn ACP2, ACYL CARRIER PROTEIN 2, T22H22.3, T22H22_3  gene ACP2  function encodes an acyl carrier protein expressed in leaves, roots, and dry seeds. Gene expression is not regulated by light but downregulated by starvation and upregulated by increased level of exogenous sucrose.  go_component chloroplast|GO:0009507|18431481|IDA  go_process fatty acid biosynthetic process|GO:0006633||TAS  go_function acyl carrier activity|GO:0000036||IDA  product ACP2 (ACYL CARRIER PROTEIN 2); acyl carrier  note ACYL CARRIER PROTEIN 2 (ACP2); FUNCTIONS IN: acyl carrier activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Phosphopantetheine-binding (InterPro:IPR006163), Acyl carrier protein (ACP) (InterPro:IPR003231), Acyl carrier protein-like (InterPro:IPR009081), Phosphopantetheine attachment site (InterPro:IPR006162); BEST Arabidopsis thaliana protein match is: ACP3 (ACYL CARRIER PROTEIN 3); acyl carrier (TAIR:AT1G54630.1); Has 4412 Blast hits to 4412 proteins in 1256 species: Archae - 0; Bacteria - 2416; Metazoa - 34; Fungi - 78; Plants - 240; Viruses - 2; Other Eukaryotes - 1642 (source: NCBI BLink).  protein_id AT1G54580.1p  transcript_id AT1G54580.1  protein_id AT1G54580.1p  transcript_id AT1G54580.1  
At1g54590	chr1:020392087	0.0	C/20392087-20392434,20391560-20391982	AT1G54590.1  CDS  gene_syn T22H22.4, T22H22_4  go_component spliceosome|GO:0005681||IEA  go_process RNA splicing|GO:0008380||IEA  go_component spliceosome|GO:0005681||ISS  go_process RNA splicing|GO:0008380||ISS  product splicing factor Prp18 family protein  note splicing factor Prp18 family protein; INVOLVED IN: RNA splicing; LOCATED IN: spliceosome; CONTAINS InterPro DOMAIN/s: Prp18 (InterPro:IPR004098); BEST Arabidopsis thaliana protein match is: splicing factor Prp18 family protein (TAIR:AT1G03140.1); Has 293 Blast hits to 293 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 124; Fungi - 85; Plants - 26; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT1G54590.1p  transcript_id AT1G54590.1  protein_id AT1G54590.1p  transcript_id AT1G54590.1  
At1g54600	chr1:020392508	0.0	W/20392508-20393630	AT1G54600.1  pseudogenic_transcript  pseudo  gene_syn T22H22.26  note pseudogene, hypothetical protein  
At1g54610	chr1:020396534	0.0	C/20396534-20396902,20396152-20396436,20395741-20396058,20395401-20395628,20395201-20395301,20394585-20394702,20393962-20394261	AT1G54610.1  CDS  gene_syn T22H22.5, T22H22_5  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G05050.1); Has 91762 Blast hits to 90567 proteins in 3011 species: Archae - 46; Bacteria - 7762; Metazoa - 40342; Fungi - 8477; Plants - 17782; Viruses - 436; Other Eukaryotes - 16917 (source: NCBI BLink).  protein_id AT1G54610.1p  transcript_id AT1G54610.1  protein_id AT1G54610.1p  transcript_id AT1G54610.1  
At1g54610	chr1:020396534	0.0	C/20396534-20396902,20396152-20396436,20395741-20396058,20395401-20395628,20395201-20395301,20394585-20394702,20393962-20394261	AT1G54610.3  CDS  gene_syn T22H22.5, T22H22_5  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G05050.1); Has 91762 Blast hits to 90567 proteins in 3011 species: Archae - 46; Bacteria - 7762; Metazoa - 40342; Fungi - 8477; Plants - 17782; Viruses - 436; Other Eukaryotes - 16917 (source: NCBI BLink).  protein_id AT1G54610.3p  transcript_id AT1G54610.3  protein_id AT1G54610.3p  transcript_id AT1G54610.3  
At1g54610	chr1:020396534	0.0	C/20396534-20396902,20396152-20396436,20395741-20396058,20395401-20395628,20395201-20395301,20394585-20394702,20393962-20394264	AT1G54610.2  CDS  gene_syn T22H22.5, T22H22_5  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G05050.1); Has 92435 Blast hits to 91230 proteins in 3013 species: Archae - 46; Bacteria - 7833; Metazoa - 40576; Fungi - 8579; Plants - 17939; Viruses - 436; Other Eukaryotes - 17026 (source: NCBI BLink).  protein_id AT1G54610.2p  transcript_id AT1G54610.2  protein_id AT1G54610.2p  transcript_id AT1G54610.2  
At1g54620	chr1:020400437	0.0	C/20400437-20401015	AT1G54620.1  CDS  gene_syn T22H22.6, T22H22_6  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT5G46980.1); Has 51 Blast hits to 51 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G54620.1p  transcript_id AT1G54620.1  protein_id AT1G54620.1p  transcript_id AT1G54620.1  
At1g54630	chr1:020402863	0.0	C/20402863-20402919,20402257-20402358,20401993-20402157	AT1G54630.2  CDS  gene_syn ACP3, ACYL CARRIER PROTEIN 3, T22H22.7, T22H22_7  gene ACP3  function encodes an acyl carrier protein expressed in leaves, roots, and dry seeds. Gene expression is not regulated by light.  go_component chloroplast|GO:0009507|18431481|IDA  go_process fatty acid biosynthetic process|GO:0006633||TAS  go_function acyl carrier activity|GO:0000036|11788768|ISS  product ACP3 (ACYL CARRIER PROTEIN 3); acyl carrier  note ACYL CARRIER PROTEIN 3 (ACP3); FUNCTIONS IN: acyl carrier activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: Phosphopantetheine-binding (InterPro:IPR006163), Acyl carrier protein-like (InterPro:IPR009081); BEST Arabidopsis thaliana protein match is: ACP2 (ACYL CARRIER PROTEIN 2); acyl carrier (TAIR:AT1G54580.1); Has 166 Blast hits to 166 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G54630.2p  transcript_id AT1G54630.2  protein_id AT1G54630.2p  transcript_id AT1G54630.2  
At1g54630	chr1:020402863	0.0	C/20402863-20402919,20402257-20402358,20402035-20402157,20401642-20401770	AT1G54630.1  CDS  gene_syn ACP3, ACYL CARRIER PROTEIN 3, T22H22.7, T22H22_7  gene ACP3  function encodes an acyl carrier protein expressed in leaves, roots, and dry seeds. Gene expression is not regulated by light.  go_component chloroplast|GO:0009507|18431481|IDA  go_process fatty acid biosynthetic process|GO:0006633||TAS  go_function acyl carrier activity|GO:0000036|11788768|ISS  product ACP3 (ACYL CARRIER PROTEIN 3); acyl carrier  note ACYL CARRIER PROTEIN 3 (ACP3); FUNCTIONS IN: acyl carrier activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: Phosphopantetheine-binding (InterPro:IPR006163), Acyl carrier protein (ACP) (InterPro:IPR003231), Acyl carrier protein-like (InterPro:IPR009081), Phosphopantetheine attachment site (InterPro:IPR006162); BEST Arabidopsis thaliana protein match is: ACP2 (ACYL CARRIER PROTEIN 2); acyl carrier (TAIR:AT1G54580.1); Has 4398 Blast hits to 4398 proteins in 1258 species: Archae - 0; Bacteria - 2411; Metazoa - 23; Fungi - 80; Plants - 235; Viruses - 2; Other Eukaryotes - 1647 (source: NCBI BLink).  protein_id AT1G54630.1p  transcript_id AT1G54630.1  protein_id AT1G54630.1p  transcript_id AT1G54630.1  
At1g54640	chr1:020404359	0.0	C/20404359-20404807,20403892-20404180	AT1G54640.1  CDS  gene_syn T22H22.8, T22H22_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: F-box family protein-related (TAIR:AT1G32600.1); Has 33 Blast hits to 31 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G54640.1p  transcript_id AT1G54640.1  protein_id AT1G54640.1p  transcript_id AT1G54640.1  
At1g54650	chr1:020407492	0.0	C/20407492-20407686,20407011-20407120,20406728-20406921,20406594-20406643,20406221-20406323,20406003-20406145,20405813-20405917	AT1G54650.1  CDS  gene_syn T22H22.9, T22H22_9  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product methyltransferase  note methyltransferase; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase, METTL2, predicted (InterPro:IPR017280), Methyltransferase type 12 (InterPro:IPR013217); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G26200.1); Has 502 Blast hits to 498 proteins in 152 species: Archae - 10; Bacteria - 10; Metazoa - 278; Fungi - 92; Plants - 36; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT1G54650.1p  transcript_id AT1G54650.1  protein_id AT1G54650.1p  transcript_id AT1G54650.1  
At1g54660	chr1:020408413	0.0	C/20408413-20411449	AT1G54660.1  pseudogenic_transcript  pseudo  gene_syn T22H22.10  note pseudogene, similar to vetispiradiene synthase, blastp match of 54% identity and 3.0e-79 P-value to GP|5360685|dbj|BAA82108.1||AB022719 vetispiradiene synthase {Solanum tuberosum}  
At1g54670	chr1:020412928	0.0	C/20412928-20413000	AT1G54670.1  tRNA  gene_syn 51037.TRNA-ALA-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: TGC)  transcript_id AT1G54670.1  
At1g54680	chr1:020413211	0.0	W/20413211-20413245,20413360-20413411,20413491-20413562,20413726-20413869,20413944-20414015,20414103-20414198,20414282-20414482	AT1G54680.1  CDS  gene_syn T22H22.11, T22H22_11  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27290.1); Has 125 Blast hits to 125 proteins in 38 species: Archae - 0; Bacteria - 44; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G54680.1p  transcript_id AT1G54680.1  protein_id AT1G54680.1p  transcript_id AT1G54680.1  
At1g54680	chr1:020413337	0.0	W/20413337-20413411,20413491-20413562,20413726-20413869,20413944-20414015,20414103-20414198,20414282-20414482	AT1G54680.2  CDS  gene_syn T22H22.11, T22H22_11  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27290.1); Has 125 Blast hits to 125 proteins in 38 species: Archae - 0; Bacteria - 44; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G54680.2p  transcript_id AT1G54680.2  protein_id AT1G54680.2p  transcript_id AT1G54680.2  
At1g54690	chr1:020415000	0.0	C/20415000-20415206,20414607-20414828	AT1G54690.1  CDS  gene_syn G-H2AX, GAMMA H2AX, GAMMA HISTONE VARIANT H2AX, GAMMA-H2AX, H2AXB, HTA3, T22H22.12, T22H22_12  gene GAMMA-H2AX  function Encodes HTA3, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (& 947;-H2AX) occurs around the break site.  H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse & 947;-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no & 947;-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of & 947;-H2AX to a maximum of >50 diffuse foci. The level of & 947;H2AX then remains constant for a further 13 h before undergoing a gradual decrease to 10 20 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin.  go_component nucleolus|GO:0005730|15496452|IDA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_component nucleus|GO:0005634|17785529|IDA  go_function DNA binding|GO:0003677||ISS  product GAMMA-H2AX (GAMMA HISTONE VARIANT H2AX); DNA binding  note GAMMA HISTONE VARIANT H2AX (GAMMA-H2AX); FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: H2AXA; DNA binding (TAIR:AT1G08880.1); Has 3292 Blast hits to 3292 proteins in 307 species: Archae - 0; Bacteria - 0; Metazoa - 2200; Fungi - 262; Plants - 450; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink).  protein_id AT1G54690.1p  transcript_id AT1G54690.1  protein_id AT1G54690.1p  transcript_id AT1G54690.1  
At1g54700	chr1:020415898	0.0	W/20415898-20415945,20416048-20416269	AT1G54700.1  CDS  gene_syn T22H22.13, T22H22_13  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Serine endopeptidase DegP2 (InterPro:IPR015724); BEST Arabidopsis thaliana protein match is: DegP13 (DegP protease 13); catalytic/ protein binding / serine-type endopeptidase/ serine-type peptidase (TAIR:AT5G40560.1); Has 35 Blast hits to 35 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G54700.1p  transcript_id AT1G54700.1  protein_id AT1G54700.1p  transcript_id AT1G54700.1  
At1g54710	chr1:020420533	0.0	C/20420533-20420733,20419914-20420357,20419388-20419828,20418904-20419149,20418072-20418815,20417810-20417985,20417645-20417724,20417128-20417574,20417019-20417023	AT1G54710.1  CDS  gene_syn AtATG18h, T22H22.14, T22H22_14  gene AtATG18h  go_component chloroplast|GO:0009507||IEA  go_process response to starvation|GO:0042594|15860012|IEP  go_function molecular_function|GO:0003674||ND  product AtATG18h  note AtATG18h; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to starvation; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: AtATG18g (TAIR:AT1G03380.1); Has 638 Blast hits to 634 proteins in 133 species: Archae - 0; Bacteria - 4; Metazoa - 332; Fungi - 180; Plants - 77; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT1G54710.1p  transcript_id AT1G54710.1  protein_id AT1G54710.1p  transcript_id AT1G54710.1  
At1g54720	chr1:020422831	0.0	W/20422831-20422927,20423400-20423537,20423624-20423754	AT1G54720.1  CDS  gene_syn T22H22.27, T22H22_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product early-responsive to dehydration protein-related / ERD protein-related  note early-responsive to dehydration protein-related / ERD protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ERD6 (EARLY RESPONSE TO DEHYDRATION 6); carbohydrate transmembrane transporter/ sugar transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT1G08930.2); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G54720.1p  transcript_id AT1G54720.1  protein_id AT1G54720.1p  transcript_id AT1G54720.1  
At1g54730	chr1:020424471	0.0	W/20424471-20424617,20424716-20424778,20425363-20425452,20425553-20425612,20425712-20425777,20426204-20426269,20426425-20426500,20426577-20426641,20426778-20426870,20426965-20427045,20427126-20427210,20427300-20427343,20428049-20428111,20428388-20428447,20428789-20428842,20429314-20429373,20429659-20429773,20429854-20429978	AT1G54730.2  CDS  gene_syn T22H22.15, T22H22_15  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product sugar transporter, putative  note sugar transporter, putative; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter, putative (TAIR:AT5G18840.1); Has 19826 Blast hits to 19482 proteins in 1233 species: Archae - 302; Bacteria - 7869; Metazoa - 4729; Fungi - 4325; Plants - 1525; Viruses - 0; Other Eukaryotes - 1076 (source: NCBI BLink).  protein_id AT1G54730.2p  transcript_id AT1G54730.2  protein_id AT1G54730.2p  transcript_id AT1G54730.2  
At1g54730	chr1:020425399	0.0	W/20425399-20425452,20425553-20425612,20425712-20425777,20426204-20426269,20426425-20426500,20426577-20426641,20426778-20426870,20426965-20427045,20427126-20427210,20427300-20427343,20428049-20428111,20428388-20428447,20428789-20428842,20429314-20429445	AT1G54730.3  CDS  gene_syn T22H22.15, T22H22_15  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product sugar transporter, putative  note sugar transporter, putative; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter, putative (TAIR:AT2G48020.2); Has 15363 Blast hits to 15253 proteins in 1025 species: Archae - 217; Bacteria - 5241; Metazoa - 3900; Fungi - 4006; Plants - 1215; Viruses - 0; Other Eukaryotes - 784 (source: NCBI BLink).  protein_id AT1G54730.3p  transcript_id AT1G54730.3  protein_id AT1G54730.3p  transcript_id AT1G54730.3  
At1g54730	chr1:020425399	0.0	W/20425399-20425452,20425553-20425612,20425712-20425801	AT1G54730.1  CDS  gene_syn T22H22.15, T22H22_15  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product sugar transporter, putative  note sugar transporter, putative; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter, putative (TAIR:AT5G18840.1); Has 230 Blast hits to 230 proteins in 44 species: Archae - 0; Bacteria - 6; Metazoa - 42; Fungi - 18; Plants - 164; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G54730.1p  transcript_id AT1G54730.1  protein_id AT1G54730.1p  transcript_id AT1G54730.1  
At1g54740	chr1:020430839	0.0	W/20430839-20431738	AT1G54740.1  CDS  gene_syn T22H22.16, T22H22_16  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT1G22110.1); Has 479 Blast hits to 317 proteins in 60 species: Archae - 0; Bacteria - 25; Metazoa - 81; Fungi - 16; Plants - 88; Viruses - 0; Other Eukaryotes - 269 (source: NCBI BLink).  protein_id AT1G54740.1p  transcript_id AT1G54740.1  protein_id AT1G54740.1p  transcript_id AT1G54740.1  
At1g54750	chr1:020432890	0.0	W/20432890-20433236	AT1G54750.1  mRNA_TE_gene  pseudo  gene_syn T22H22.28  note Transposable element gene, pseudogene, hypothetical protein  
At1g54760	chr1:020433912	0.0	W/20433912-20434397	AT1G54760.1  CDS  gene_syn AGAMOUS-LIKE 85, AGL85, T22H22.17, T22H22_17  gene AGL85  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product AGL85 (AGAMOUS-LIKE 85); DNA binding / transcription factor  note AGAMOUS-LIKE 85 (AGL85); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL64 (AGAMOUS-LIKE 64); transcription factor (TAIR:AT1G29962.1); Has 171 Blast hits to 171 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G54760.1p  transcript_id AT1G54760.1  protein_id AT1G54760.1p  transcript_id AT1G54760.1  
At1g54770	chr1:020434803	0.0	W/20434803-20435014,20435095-20435155,20435233-20435310,20435397-20435509,20435710-20435815	AT1G54770.1  CDS  gene_syn T22H22.18, T22H22_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fcf2 pre-rRNA processing (InterPro:IPR014810); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G30495.2); Has 216 Blast hits to 216 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 88; Fungi - 76; Plants - 26; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G54770.1p  transcript_id AT1G54770.1  protein_id AT1G54770.1p  transcript_id AT1G54770.1  
At1g54775	chr1:020437784	0.0	C/20437784-20438014	AT1G54775.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G58242.1); Has 42 Blast hits to 42 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G54775.1p  transcript_id AT1G54775.1  protein_id AT1G54775.1p  transcript_id AT1G54775.1  
At1g54780	chr1:020439533	0.0	W/20439533-20439949,20440033-20440225,20440706-20440953	AT1G54780.1  CDS  gene_syn T22H22.19, T22H22_19  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product thylakoid lumen 18.3 kDa protein  note thylakoid lumen 18.3 kDa protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF477 (InterPro:IPR007621); Has 159 Blast hits to 159 proteins in 71 species: Archae - 0; Bacteria - 103; Metazoa - 2; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT1G54780.1p  transcript_id AT1G54780.1  protein_id AT1G54780.1p  transcript_id AT1G54780.1  
At1g54790	chr1:020443760	0.0	C/20443760-20443997,20442100-20442303,20441835-20442001,20441124-20441741	AT1G54790.2  CDS  gene_syn T22H22.20, T22H22_20  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT3G05180.1); Has 1518 Blast hits to 1500 proteins in 59 species: Archae - 0; Bacteria - 12; Metazoa - 1; Fungi - 2; Plants - 1503; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G54790.2p  transcript_id AT1G54790.2  protein_id AT1G54790.2p  transcript_id AT1G54790.2  
At1g54790	chr1:020443760	0.0	C/20443760-20443997,20442100-20442303,20441835-20442001,20441471-20441741,20441124-20441392	AT1G54790.1  CDS  gene_syn T22H22.20, T22H22_20  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT3G05180.1); Has 1592 Blast hits to 1570 proteins in 87 species: Archae - 0; Bacteria - 61; Metazoa - 1; Fungi - 4; Plants - 1524; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G54790.1p  transcript_id AT1G54790.1  protein_id AT1G54790.1p  transcript_id AT1G54790.1  
At1g54820	chr1:020447370	0.0	W/20447370-20447664,20447827-20448113,20449352-20449752,20449945-20450077,20450227-20450316,20450591-20450761	AT1G54820.1  CDS  gene_syn T22H22.21, T22H22_21  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G58690.1); Has 75979 Blast hits to 75222 proteins in 2084 species: Archae - 40; Bacteria - 7202; Metazoa - 32286; Fungi - 5851; Plants - 17653; Viruses - 289; Other Eukaryotes - 12658 (source: NCBI BLink).  protein_id AT1G54820.1p  transcript_id AT1G54820.1  protein_id AT1G54820.1p  transcript_id AT1G54820.1  
At1g54830	chr1:020451672	0.0	W/20451672-20452325	AT1G54830.1  CDS  gene_syn F14C21.41, F14C21_41, NF-YC3, NUCLEAR FACTOR Y, SUBUNIT C3  gene NF-YC3  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3); DNA binding / transcription factor  note NUCLEAR FACTOR Y, SUBUNIT C3 (NF-YC3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9); DNA binding / transcription factor (TAIR:AT1G08970.4); Has 934 Blast hits to 934 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 358; Fungi - 244; Plants - 253; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT1G54830.1p  transcript_id AT1G54830.1  protein_id AT1G54830.1p  transcript_id AT1G54830.1  
At1g54830	chr1:020451672	0.0	W/20451672-20452325	AT1G54830.2  CDS  gene_syn F14C21.41, F14C21_41, NF-YC3, NUCLEAR FACTOR Y, SUBUNIT C3  gene NF-YC3  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3); DNA binding / transcription factor  note NUCLEAR FACTOR Y, SUBUNIT C3 (NF-YC3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9); DNA binding / transcription factor (TAIR:AT1G08970.4); Has 934 Blast hits to 934 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 358; Fungi - 244; Plants - 253; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT1G54830.2p  transcript_id AT1G54830.2  protein_id AT1G54830.2p  transcript_id AT1G54830.2  
At1g54830	chr1:020451672	0.0	W/20451672-20452325	AT1G54830.3  CDS  gene_syn F14C21.41, F14C21_41, NF-YC3, NUCLEAR FACTOR Y, SUBUNIT C3  gene NF-YC3  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3); DNA binding / transcription factor  note NUCLEAR FACTOR Y, SUBUNIT C3 (NF-YC3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9); DNA binding / transcription factor (TAIR:AT1G08970.4); Has 934 Blast hits to 934 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 358; Fungi - 244; Plants - 253; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT1G54830.3p  transcript_id AT1G54830.3  protein_id AT1G54830.3p  transcript_id AT1G54830.3  
At1g54840	chr1:020453137	0.0	C/20453137-20453932,20452801-20453054	AT1G54840.1  CDS  gene_syn T22H22.23, T22H22_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54850.1); Has 44 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G54840.1p  transcript_id AT1G54840.1  protein_id AT1G54840.1p  transcript_id AT1G54840.1  
At1g54840	chr1:020453137	0.0	C/20453137-20453932,20453034-20453044	AT1G54840.2  CDS  gene_syn T22H22.23, T22H22_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20870.1); Has 22 Blast hits to 22 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G54840.2p  transcript_id AT1G54840.2  protein_id AT1G54840.2p  transcript_id AT1G54840.2  
At1g54850	chr1:020454440	0.0	W/20454440-20454444,20455114-20455481,20455747-20455994	AT1G54850.1  CDS  gene_syn F14C21.42, F14C21_42  go_component nucleolus|GO:0005730|15496452|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54840.1); Has 35 Blast hits to 35 proteins in 7 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G54850.1p  transcript_id AT1G54850.1  protein_id AT1G54850.1p  transcript_id AT1G54850.1  
At1g54860	chr1:020458347	0.0	C/20458347-20458434,20457522-20458036	AT1G54860.1  CDS  gene_syn F14C21.37, F14C21_37  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19250.1); Has 42 Blast hits to 41 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G54860.1p  transcript_id AT1G54860.1  protein_id AT1G54860.1p  transcript_id AT1G54860.1  
At1g54870	chr1:020459011	0.0	W/20459011-20459259,20459474-20459850,20459934-20460292,20460395-20460417	AT1G54870.1  CDS  gene_syn F14C21.43, F14C21_43  go_component chloroplast|GO:0009507||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product binding / catalytic/ oxidoreductase  note binding / catalytic/ oxidoreductase; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT3G05260.1); Has 83077 Blast hits to 82922 proteins in 2231 species: Archae - 482; Bacteria - 45268; Metazoa - 5002; Fungi - 4212; Plants - 1573; Viruses - 5; Other Eukaryotes - 26535 (source: NCBI BLink).  protein_id AT1G54870.1p  transcript_id AT1G54870.1  protein_id AT1G54870.1p  transcript_id AT1G54870.1  
At1g54880	chr1:020461529	0.0	C/20461529-20461558,20461038-20461199	AT1G54880.1  CDS  gene_syn F14C21.36, F14C21_36  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G54880.1p  transcript_id AT1G54880.1  protein_id AT1G54880.1p  transcript_id AT1G54880.1  
At1g54890	chr1:020463107	0.0	W/20463107-20463347,20463605-20464407	AT1G54890.1  CDS  gene_syn F14C21.44, F14C21_44  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product late embryogenesis abundant protein-related / LEA protein-related  note late embryogenesis abundant protein-related / LEA protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Root cap (InterPro:IPR009646); BEST Arabidopsis thaliana protein match is: late embryogenesis abundant protein-related / LEA protein-related (TAIR:AT5G54370.1); Has 107 Blast hits to 107 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G54890.1p  transcript_id AT1G54890.1  protein_id AT1G54890.1p  transcript_id AT1G54890.1  
At1g54905	chr1:020470025	0.0	W/20470025-20470247	AT1G54905.1  mRNA_TE_gene  pseudo  gene_syn F14C21.45  note Transposable element gene, copia-like retrotransposon family, has a 4.3e-08 P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At1g54920	chr1:020470916	0.0	W/20470916-20471602,20471802-20472023,20472098-20472301,20472714-20473391,20473522-20473581,20473791-20473952,20474051-20474267,20474346-20474666,20474777-20474898	AT1G54920.2  CDS  gene_syn F14C21.46, F14C21_46  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 434 Blast hits to 317 proteins in 67 species: Archae - 2; Bacteria - 27; Metazoa - 209; Fungi - 34; Plants - 25; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).  protein_id AT1G54920.2p  transcript_id AT1G54920.2  protein_id AT1G54920.2p  transcript_id AT1G54920.2  
At1g54920	chr1:020470916	0.0	W/20470916-20471602,20471802-20472023,20472098-20472301,20472714-20473391,20473522-20473581,20473791-20473952,20474051-20474267,20474351-20474421	AT1G54920.1  CDS  gene_syn F14C21.46, F14C21_46  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 312 Blast hits to 219 proteins in 48 species: Archae - 0; Bacteria - 14; Metazoa - 150; Fungi - 20; Plants - 24; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT1G54920.1p  transcript_id AT1G54920.1  protein_id AT1G54920.1p  transcript_id AT1G54920.1  
At1g54923	chr1:020475757	0.0	C/20475757-20476568	AT1G54923.1  mRNA_TE_gene  pseudo  gene_syn F14C21.35, F14C21_35  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30816.1)  
At1g54926	chr1:020476624	0.0	C/20476624-20477773	AT1G54926.1  mRNA_TE_gene  pseudo  gene_syn F14C21.34, F14C21_34  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G47240.1)  
At1g54930	chr1:020479444	0.0	C/20479444-20479671,20478987-20479245,20478267-20478841	AT1G54930.1  CDS  gene_syn F14C21.33, F14C21_33  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc knuckle (CCHC-type) family protein  note zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, GRF-type (InterPro:IPR010666); BEST Arabidopsis thaliana protein match is: zinc knuckle (CCHC-type) family protein (TAIR:AT5G13920.1); Has 56 Blast hits to 45 proteins in 21 species: Archae - 2; Bacteria - 0; Metazoa - 8; Fungi - 3; Plants - 38; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G54930.1p  transcript_id AT1G54930.1  protein_id AT1G54930.1p  transcript_id AT1G54930.1  
At1g54940	chr1:020481690	0.0	W/20481690-20482422,20483271-20483731,20484062-20484541	AT1G54940.1  CDS  gene_syn F14C21.47, F14C21_47, PGSIP4, PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 4  gene PGSIP4  go_component endomembrane system|GO:0012505||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||IEA  go_process biosynthetic process|GO:0009058||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product PGSIP4 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 4); transferase, transferring glycosyl groups  note PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 4 (PGSIP4); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: PGSIP5 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 5); transferase, transferring glycosyl groups (TAIR:AT1G08990.1); Has 928 Blast hits to 926 proteins in 202 species: Archae - 0; Bacteria - 63; Metazoa - 222; Fungi - 204; Plants - 305; Viruses - 72; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT1G54940.1p  transcript_id AT1G54940.1  protein_id AT1G54940.1p  transcript_id AT1G54940.1  
At1g54950	chr1:020491175	0.0	C/20491175-20491275,20490528-20490717	AT1G54950.1  CDS  gene_syn F14C21.32, F14C21_32  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07690.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G54950.1p  transcript_id AT1G54950.1  protein_id AT1G54950.1p  transcript_id AT1G54950.1  
At1g54955	chr1:020494120	0.0	W/20494120-20494734	AT1G54955.1  mRNA_TE_gene  pseudo  gene_syn F14C21.48, F14C21_48  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05145.1); similar to hypothetical protein 23.t00046 [Brassica oleracea] (GB:ABD65629.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446)  
At1g54960	chr1:020500058	0.0	W/20500058-20500216,20500444-20500485,20500573-20500638,20500735-20500845,20500923-20501003,20501088-20501165,20501299-20501381,20501466-20501547,20501624-20501724,20501820-20501859,20501947-20502006,20502096-20502145,20502225-20502453,20502547-20502717,20502813-20503114,20503329-20503399,20503493-20503587	AT1G54960.1  CDS  gene_syn ANP2, F14C21.49, F14C21_49, MAPKKK2, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2  gene ANP2  function member of MEKK subfamily  go_component cellular_component|GO:0005575||ND  go_process cytokinesis|GO:0000910|12034900|IGI  go_function MAP kinase kinase kinase activity|GO:0004709|9263451|ISS  go_function kinase activity|GO:0016301||ISS  product ANP2; MAP kinase kinase kinase/ kinase  note ANP2; FUNCTIONS IN: MAP kinase kinase kinase activity, kinase activity; INVOLVED IN: cytokinesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Mitogen activated protein kinase kinase kinase 3 (InterPro:IPR015748), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: ANP1 (ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 1); MAP kinase kinase kinase/ kinase (TAIR:AT1G09000.1); Has 99036 Blast hits to 97213 proteins in 3416 species: Archae - 71; Bacteria - 8559; Metazoa - 43602; Fungi - 8858; Plants - 19133; Viruses - 538; Other Eukaryotes - 18275 (source: NCBI BLink).  protein_id AT1G54960.1p  transcript_id AT1G54960.1  protein_id AT1G54960.1p  transcript_id AT1G54960.1  
At1g54970	chr1:020505000	0.0	W/20505000-20505690,20505922-20506238	AT1G54970.1  CDS  gene_syn ATPRP1, F14C21.50, F14C21_50, PROLINE-RICH PROTEIN 1  gene ATPRP1  function encodes a proline-rich protein that is specifically expressed in the root.  go_function structural constituent of cell wall|GO:0005199||IEA  go_component cell wall|GO:0005618|10594096|ISS  product ATPRP1 (PROLINE-RICH PROTEIN 1); structural constituent of cell wall  note PROLINE-RICH PROTEIN 1 (ATPRP1); FUNCTIONS IN: structural constituent of cell wall; LOCATED IN: cell wall; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Extensin-like protein (InterPro:IPR003883); BEST Arabidopsis thaliana protein match is: PRP3 (PROLINE-RICH PROTEIN 3); structural constituent of cell wall (TAIR:AT3G62680.1); Has 40306 Blast hits to 17933 proteins in 1046 species: Archae - 219; Bacteria - 5580; Metazoa - 16223; Fungi - 4349; Plants - 6671; Viruses - 1675; Other Eukaryotes - 5589 (source: NCBI BLink).  protein_id AT1G54970.1p  transcript_id AT1G54970.1  protein_id AT1G54970.1p  transcript_id AT1G54970.1  
At1g54980	chr1:020508322	0.0	C/20508322-20508355,20508066-20508220,20507375-20507728	AT1G54980.1  CDS  gene_syn F14C21.31, F14C21_31  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT5G50070.1); Has 23 Blast hits to 23 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G54980.1p  transcript_id AT1G54980.1  protein_id AT1G54980.1p  transcript_id AT1G54980.1  
At1g54985	chr1:020509840	0.0	W/20509840-20511162	AT1G54985.1  pseudogenic_transcript  pseudo  gene_syn F14C21.52  note pseudogene, hypothetical protein  
At1g54990	chr1:020511565	0.0	W/20511565-20512764,20513268-20513489	AT1G54990.1  CDS  gene_syn AUXIN RESISTANT 4, AXR4, F14C21.51, F14C21_51, REDUCED ROOT GRAVITROPISM, REDUCED ROOT GRAVITROPISM 1, RGR, RGR1  gene AXR4  function auxin response mutant (AXR4)  go_component mitochondrion|GO:0005739|15276431|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum|GO:0005783|16690816|IDA  go_process response to mechanical stimulus|GO:0009612|9847088|IMP  go_process response to auxin stimulus|GO:0009733|11135112|IMP  go_process auxin polar transport|GO:0009926|16690816|IMP  go_function molecular_function|GO:0003674||ND  product AXR4 (AUXIN RESISTANT 4)  note AUXIN RESISTANT 4 (AXR4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus, response to mechanical stimulus, auxin polar transport; LOCATED IN: mitochondrion, endoplasmic reticulum, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; Has 96 Blast hits to 96 proteins in 28 species: Archae - 0; Bacteria - 39; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G54990.1p  transcript_id AT1G54990.1  protein_id AT1G54990.1p  transcript_id AT1G54990.1  
At1g55000	chr1:020514762	0.0	W/20514762-20515043,20515783-20516166	AT1G55000.1  CDS  gene_syn F14C21.53, F14C21_53  go_component endomembrane system|GO:0012505||IEA  go_process cell wall macromolecule catabolic process|GO:0016998||IEA  go_process cell wall macromolecule catabolic process|GO:0016998||ISS  go_function molecular_function|GO:0003674||ND  product peptidoglycan-binding LysM domain-containing protein  note peptidoglycan-binding LysM domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), Cyclin-like F-box (InterPro:IPR001810), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482); Has 98 Blast hits to 98 proteins in 27 species: Archae - 0; Bacteria - 2; Metazoa - 51; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G55000.1p  transcript_id AT1G55000.1  protein_id AT1G55000.1p  transcript_id AT1G55000.1  
At1g55000	chr1:020514762	0.0	W/20514762-20515043,20515783-20516166	AT1G55000.2  CDS  gene_syn F14C21.53, F14C21_53  go_component endomembrane system|GO:0012505||IEA  go_process cell wall macromolecule catabolic process|GO:0016998||IEA  go_process cell wall macromolecule catabolic process|GO:0016998||ISS  go_function molecular_function|GO:0003674||ND  product peptidoglycan-binding LysM domain-containing protein  note peptidoglycan-binding LysM domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), Cyclin-like F-box (InterPro:IPR001810), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482); Has 98 Blast hits to 98 proteins in 27 species: Archae - 0; Bacteria - 2; Metazoa - 51; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G55000.2p  transcript_id AT1G55000.2  protein_id AT1G55000.2p  transcript_id AT1G55000.2  
At1g55000	chr1:020514762	0.0	W/20514762-20515043,20515783-20516166	AT1G55000.3  CDS  gene_syn F14C21.53, F14C21_53  go_component endomembrane system|GO:0012505||IEA  go_process cell wall macromolecule catabolic process|GO:0016998||IEA  go_process cell wall macromolecule catabolic process|GO:0016998||ISS  go_function molecular_function|GO:0003674||ND  product peptidoglycan-binding LysM domain-containing protein  note peptidoglycan-binding LysM domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), Cyclin-like F-box (InterPro:IPR001810), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482); Has 98 Blast hits to 98 proteins in 27 species: Archae - 0; Bacteria - 2; Metazoa - 51; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G55000.3p  transcript_id AT1G55000.3  protein_id AT1G55000.3p  transcript_id AT1G55000.3  
At1g55010	chr1:020517078	0.0	W/20517078-20517141,20517225-20517403	AT1G55010.1  CDS  gene_syn F14C21.57, F14C21_57, PDF1.5, plant defensin 1.5  gene PDF1.5  function Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952|18674922|ISS  go_process defense response|GO:0006952||ISS  go_function molecular_function|GO:0003674||ND  product PDF1.5 (plant defensin 1.5)  note plant defensin 1.5 (PDF1.5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: PDF1.2b (plant defensin 1.2b) (TAIR:AT2G26020.1); Has 86 Blast hits to 86 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G55010.1p  transcript_id AT1G55010.1  protein_id AT1G55010.1p  transcript_id AT1G55010.1  
At1g55020	chr1:020525798	0.0	W/20525798-20525996,20527241-20527530,20527629-20528202,20528286-20528371,20528460-20528567,20528643-20528944,20529026-20529292,20529390-20530143	AT1G55020.1  CDS  gene_syn LIPOXYGENASE, LIPOXYGENASE 1, LOX1  gene LOX1  function lipoxygenase, a defense gene conferring resistance Xanthomonas campestris  go_component cellular_component|GO:0005575||ND  go_process defense response|GO:0006952|7506426|TAS  go_process response to wounding|GO:0009611|7506426|TAS  go_process jasmonic acid biosynthetic process|GO:0009695|7506426|TAS  go_process response to abscisic acid stimulus|GO:0009737|7506426|IEP  go_process response to jasmonic acid stimulus|GO:0009753|7506426|IEP  go_process defense response to bacterium, incompatible interaction|GO:0009816|7506426|IEP  go_process membrane disassembly|GO:0030397|7506426|TAS  go_process growth|GO:0040007|7506426|TAS  go_process root development|GO:0048364|17369372|IMP  go_function lipoxygenase activity|GO:0016165|7506426|IMP  go_function lipoxygenase activity|GO:0016165|7506426|ISS  product LOX1; lipoxygenase  note LIPOXYGENASE 1 (LOX1); FUNCTIONS IN: lipoxygenase activity; INVOLVED IN: in 9 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Lipoxygenase, C-terminal (InterPro:IPR013819), Lipoxygenase (InterPro:IPR000907), Lipoxygenase, plant (InterPro:IPR001246); BEST Arabidopsis thaliana protein match is: LOX5; electron carrier/ iron ion binding / lipoxygenase/ metal ion binding / oxidoreductase, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (TAIR:AT3G22400.1); Has 1128 Blast hits to 1110 proteins in 149 species: Archae - 0; Bacteria - 75; Metazoa - 487; Fungi - 38; Plants - 512; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G55020.1p  transcript_id AT1G55020.1  protein_id AT1G55020.1p  transcript_id AT1G55020.1  
At1g55030	chr1:020530782	0.0	C/20530782-20531768,20530417-20530698	AT1G55030.1  CDS  gene_syn F14C21.30, F14C21_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, D bilateral stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G52680.2); Has 1118 Blast hits to 1092 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 36; Fungi - 2; Plants - 1080; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G55030.1p  transcript_id AT1G55030.1  protein_id AT1G55030.1p  transcript_id AT1G55030.1  
At1g55035	chr1:020532844	0.0	C/20532844-20534375	AT1G55035.1  pseudogenic_transcript  pseudo  gene_syn F14C21.29  note pseudogene, putative importin alpha, similar to importin alpha GI:3342556 from (Arabidopsis thaliana); blastp match of 66% identity and 2.6e-167 P-value to GP|13752562|gb|AAK38727.1|AF369707_1|AF369707 importin alpha 2 {Capsicum annuum}  
At1g55040	chr1:020534895	0.0	W/20534895-20535559,20535756-20535873,20536494-20536846,20537387-20537485,20537587-20538901	AT1G55040.1  CDS  gene_syn F14C21.55, F14C21_55  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_function binding|GO:0005488||ISS  product zinc finger (Ran-binding) family protein  note zinc finger (Ran-binding) family protein; FUNCTIONS IN: binding, zinc ion binding; LOCATED IN: nucleus; EXPRESSED IN: cultured cell, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: zinc finger (Ran-binding) family protein (TAIR:AT1G70650.1); Has 20674 Blast hits to 10838 proteins in 812 species: Archae - 48; Bacteria - 5140; Metazoa - 7797; Fungi - 1930; Plants - 2129; Viruses - 203; Other Eukaryotes - 3427 (source: NCBI BLink).  protein_id AT1G55040.1p  transcript_id AT1G55040.1  protein_id AT1G55040.1p  transcript_id AT1G55040.1  
At1g55045	chr1:020540693	0.0	W/20540693-20540890	AT1G55045.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G55045.1p  transcript_id AT1G55045.1  protein_id AT1G55045.1p  transcript_id AT1G55045.1  
At1g55050	chr1:020542779	0.0	W/20542779-20543453,20543540-20545612	AT1G55050.1  CDS  gene_syn T7N22.1, T7N22_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: ELM2 (InterPro:IPR000949); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09050.1); Has 2245 Blast hits to 1824 proteins in 229 species: Archae - 0; Bacteria - 114; Metazoa - 922; Fungi - 135; Plants - 108; Viruses - 17; Other Eukaryotes - 949 (source: NCBI BLink).  protein_id AT1G55050.1p  transcript_id AT1G55050.1  protein_id AT1G55050.1p  transcript_id AT1G55050.1  
At1g55050	chr1:020542779	0.0	W/20542779-20543453,20543540-20545612	AT1G55050.2  CDS  gene_syn T7N22.1, T7N22_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: ELM2 (InterPro:IPR000949); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09050.1); Has 2245 Blast hits to 1824 proteins in 229 species: Archae - 0; Bacteria - 114; Metazoa - 922; Fungi - 135; Plants - 108; Viruses - 17; Other Eukaryotes - 949 (source: NCBI BLink).  protein_id AT1G55050.2p  transcript_id AT1G55050.2  protein_id AT1G55050.2p  transcript_id AT1G55050.2  
At1g55060	chr1:020549533	0.0	W/20549533-20550225	AT1G55060.1  CDS  gene_syn T7N22.10, UBIQUITIN 12, UBQ12  gene UBQ12  function Ubiquitin-like gene, believed to be a pseudogene because of amino acid substitutions in 3 of the 5 ubiquitin repeats found in the UBQ12 gene product  go_component intracellular|GO:0005622||TAS  go_process protein modification process|GO:0006464||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|7713442|ISS  go_function protein binding|GO:0005515|8382544|ISS  product UBQ12 (UBIQUITIN 12); protein binding  note UBIQUITIN 12 (UBQ12); FUNCTIONS IN: protein binding; INVOLVED IN: protein modification process, ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: UBQ4; protein binding (TAIR:AT5G20620.1); Has 15145 Blast hits to 5499 proteins in 612 species: Archae - 0; Bacteria - 21; Metazoa - 7378; Fungi - 1508; Plants - 2616; Viruses - 452; Other Eukaryotes - 3170 (source: NCBI BLink).  protein_id AT1G55060.1p  transcript_id AT1G55060.1  protein_id AT1G55060.1p  transcript_id AT1G55060.1  
At1g55070	chr1:020551452	0.0	W/20551452-20552633	AT1G55070.1  CDS  gene_syn T7N22.2, T7N22_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G53550.1); Has 578 Blast hits to 558 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 578; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G55070.1p  transcript_id AT1G55070.1  protein_id AT1G55070.1p  transcript_id AT1G55070.1  
At1g55080	chr1:020553701	0.0	C/20553701-20554174,20553569-20553631,20553403-20553483,20553265-20553323,20553121-20553178	AT1G55080.1  CDS  gene_syn T7N22.3, T7N22_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29580.1); Has 64498 Blast hits to 23302 proteins in 980 species: Archae - 12; Bacteria - 3118; Metazoa - 24455; Fungi - 7046; Plants - 5363; Viruses - 296; Other Eukaryotes - 24208 (source: NCBI BLink).  protein_id AT1G55080.1p  transcript_id AT1G55080.1  protein_id AT1G55080.1p  transcript_id AT1G55080.1  
At1g55090	chr1:020554857	0.0	W/20554857-20555050,20555212-20555517,20555599-20555822,20555921-20556024,20556121-20556255,20556330-20556498,20556599-20556734,20556839-20556977,20557093-20557269,20557355-20557522,20557605-20557700,20557782-20557910,20557988-20558188	AT1G55090.1  CDS  gene_syn T7N22.4, T7N22_4  go_process nitrogen compound metabolic process|GO:0006807||IEA  go_process NAD biosynthetic process|GO:0009435||IEA  go_function NAD+ synthase (glutamine-hydrolyzing) activity|GO:0003952||IEA  go_function ATP binding|GO:0005524||IEA  go_function hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds|GO:0016810||IEA  go_component cellular_component|GO:0005575||ND  go_process nitrogen compound metabolic process|GO:0006807||ISS  go_function hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds|GO:0016810||ISS  product carbon-nitrogen hydrolase family protein  note carbon-nitrogen hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, NAD+ synthase (glutamine-hydrolyzing) activity, ATP binding; INVOLVED IN: nitrogen compound metabolic process, NAD biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (InterPro:IPR003010), NAD+ synthase (InterPro:IPR003694), Glutamine-dependent NAD(+) synthetase, GAT region (InterPro:IPR014445); Has 3609 Blast hits to 3596 proteins in 1316 species: Archae - 149; Bacteria - 2377; Metazoa - 135; Fungi - 86; Plants - 19; Viruses - 0; Other Eukaryotes - 843 (source: NCBI BLink).  protein_id AT1G55090.1p  transcript_id AT1G55090.1  protein_id AT1G55090.1p  transcript_id AT1G55090.1  
At1g55100	chr1:020558235	0.0	C/20558235-20559103	AT1G55100.1  mRNA_TE_gene  pseudo  gene_syn T7N22.13  note Transposable element gene, pseudogene, putative ATP synthase beta subunit  
At1g55110	chr1:020562409	0.0	C/20562409-20562625,20561686-20562085,20560406-20561156	AT1G55110.1  CDS  gene_syn Arabidopsis thaliana Indeterminate(ID)-Domain 7, AtIDD7, T7N22.5, T7N22_5  gene AtIDD7  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product AtIDD7 (Arabidopsis thaliana Indeterminate(ID)-Domain 7); nucleic acid binding / transcription factor/ zinc ion binding  note Arabidopsis thaliana Indeterminate(ID)-Domain 7 (AtIDD7); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: AtIDD11 (Arabidopsis thaliana Indeterminate(ID)-Domain 11); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT3G13810.1); Has 46239 Blast hits to 18094 proteins in 343 species: Archae - 0; Bacteria - 0; Metazoa - 44259; Fungi - 229; Plants - 435; Viruses - 0; Other Eukaryotes - 1316 (source: NCBI BLink).  protein_id AT1G55110.1p  transcript_id AT1G55110.1  protein_id AT1G55110.1p  transcript_id AT1G55110.1  
At1g55120	chr1:020566617	0.0	W/20566617-20566773,20566930-20566938,20567032-20567903,20568040-20568198,20568339-20568595,20568705-20568795,20568926-20569165	AT1G55120.1  CDS  gene_syn 6-fructan exohydrolase, ATFRUCT5, AtcwINV3, BETA-FRUCTOFURANOSIDASE, BETA-FRUCTOFURANOSIDASE 5, T7N22.6, T7N22_6  gene ATFRUCT5  function Encodes a protein with fructan exohydrolase (FEH) activity acting on levan-type fructans (6-FEH, levanase). The enzyme does not have invertase activity.  go_component vacuole|GO:0005773|15539469|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process sucrose catabolic process, using beta-fructofuranosidase|GO:0019575||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function levanase activity|GO:0031219||IDA  product ATFRUCT5 (BETA-FRUCTOFURANOSIDASE 5); hydrolase, hydrolyzing O-glycosyl compounds / levanase  note BETA-FRUCTOFURANOSIDASE 5 (ATFRUCT5); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, levanase activity; INVOLVED IN: sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 32 (InterPro:IPR001362), Glycoside hydrolase, family 32, active site (InterPro:IPR018053), Glycosyl hydrolases family 32, N-terminal (InterPro:IPR013148), Glycosyl hydrolase family 32, C-terminal (InterPro:IPR013189), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: ATBFRUCT1; beta-fructofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT3G13790.1); Has 2219 Blast hits to 2191 proteins in 632 species: Archae - 4; Bacteria - 1179; Metazoa - 5; Fungi - 198; Plants - 637; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink).  protein_id AT1G55120.1p  transcript_id AT1G55120.1  protein_id AT1G55120.1p  transcript_id AT1G55120.1  
At1g55120	chr1:020566983	0.0	W/20566983-20567903,20568040-20568198,20568339-20568595,20568705-20568795,20568926-20569165	AT1G55120.2  CDS  gene_syn 6-fructan exohydrolase, ATFRUCT5, AtcwINV3, BETA-FRUCTOFURANOSIDASE, BETA-FRUCTOFURANOSIDASE 5, T7N22.6, T7N22_6  gene ATFRUCT5  function Encodes a protein with fructan exohydrolase (FEH) activity acting on levan-type fructans (6-FEH, levanase). The enzyme does not have invertase activity.  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function levanase activity|GO:0031219||IDA  product ATFRUCT5 (BETA-FRUCTOFURANOSIDASE 5); hydrolase, hydrolyzing O-glycosyl compounds / levanase  note BETA-FRUCTOFURANOSIDASE 5 (ATFRUCT5); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, levanase activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 32 (InterPro:IPR001362), Glycosyl hydrolases family 32, N-terminal (InterPro:IPR013148), Glycosyl hydrolase family 32, C-terminal (InterPro:IPR013189), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: ATBFRUCT1; beta-fructofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT3G13790.1); Has 2188 Blast hits to 2164 proteins in 632 species: Archae - 4; Bacteria - 1166; Metazoa - 5; Fungi - 189; Plants - 636; Viruses - 0; Other Eukaryotes - 188 (source: NCBI BLink).  protein_id AT1G55120.2p  transcript_id AT1G55120.2  protein_id AT1G55120.2p  transcript_id AT1G55120.2  
At1g55130	chr1:020569654	0.0	W/20569654-20569761,20570041-20570205,20570285-20570394,20570482-20570590,20570680-20570792,20570888-20571038,20571109-20572266	AT1G55130.1  CDS  gene_syn T7N22.7, T7N22_7  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component integral to membrane|GO:0016021||ISS  product endomembrane protein 70, putative  note endomembrane protein 70, putative; LOCATED IN: integral to membrane, Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: endomembrane protein 70, putative (TAIR:AT3G13772.1); Has 1020 Blast hits to 1007 proteins in 163 species: Archae - 0; Bacteria - 2; Metazoa - 446; Fungi - 142; Plants - 240; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink).  protein_id AT1G55130.1p  transcript_id AT1G55130.1  protein_id AT1G55130.1p  transcript_id AT1G55130.1  
At1g55140	chr1:020574125	0.0	C/20574125-20574332,20573905-20574035,20573329-20573418,20573011-20573067,20572788-20572814	AT1G55140.2  CDS  gene_syn T7N22.8, T7N22_8  go_component chloroplast|GO:0009507||IEA  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_function ribonuclease III activity|GO:0004525||IEA  product RNA binding / ribonuclease III  note RNA binding / ribonuclease III; FUNCTIONS IN: RNA binding, ribonuclease III activity; INVOLVED IN: RNA processing; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Ribonuclease III (InterPro:IPR000999); BEST Arabidopsis thaliana protein match is: URF 4-related (TAIR:AT3G13740.1); Has 145 Blast hits to 144 proteins in 69 species: Archae - 0; Bacteria - 116; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G55140.2p  transcript_id AT1G55140.2  protein_id AT1G55140.2p  transcript_id AT1G55140.2  
At1g55140	chr1:020574125	0.0	C/20574125-20574332,20573905-20574035,20573329-20573418,20573015-20573067,20572714-20572816,20572503-20572631	AT1G55140.1  CDS  gene_syn T7N22.8, T7N22_8  go_component chloroplast|GO:0009507||IEA  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_function ribonuclease III activity|GO:0004525||IEA  product RNA binding / ribonuclease III  note RNA binding / ribonuclease III; FUNCTIONS IN: RNA binding, ribonuclease III activity; INVOLVED IN: RNA processing; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Ribonuclease III (InterPro:IPR000999); BEST Arabidopsis thaliana protein match is: URF 4-related (TAIR:AT3G13740.1); Has 696 Blast hits to 695 proteins in 301 species: Archae - 0; Bacteria - 570; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).  protein_id AT1G55140.1p  transcript_id AT1G55140.1  protein_id AT1G55140.1p  transcript_id AT1G55140.1  
At1g55150	chr1:020574634	0.0	W/20574634-20574689,20574880-20575145,20575279-20575458,20575556-20575717,20575823-20575977,20576062-20576154,20576245-20576330,20576429-20576655,20576744-20576977,20577095-20577141	AT1G55150.1  CDS  gene_syn T7N22.9, T7N22_9  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_component cellular_component|GO:0005575||ND  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD box RNA helicase, putative (RH20)  note DEAD box RNA helicase, putative (RH20); FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ethylene-responsive DEAD box RNA helicase, putative (RH30) (TAIR:AT5G63120.2); Has 30587 Blast hits to 29974 proteins in 1774 species: Archae - 607; Bacteria - 12473; Metazoa - 5312; Fungi - 3367; Plants - 1465; Viruses - 20; Other Eukaryotes - 7343 (source: NCBI BLink).  protein_id AT1G55150.1p  transcript_id AT1G55150.1  protein_id AT1G55150.1p  transcript_id AT1G55150.1  
At1g55152	chr1:020577944	0.0	C/20577944-20578123	AT1G55152.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G55152.1p  transcript_id AT1G55152.1  protein_id AT1G55152.1p  transcript_id AT1G55152.1  
At1g55160	chr1:020578476	0.0	W/20578476-20578524,20578700-20578909,20579164-20579195,20579305-20579347,20579496-20579803	AT1G55160.3  CDS  gene_syn T7N22.11  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19530.1).  protein_id AT1G55160.3p  transcript_id AT1G55160.3  protein_id AT1G55160.3p  transcript_id AT1G55160.3  
At1g55160	chr1:020578476	0.0	W/20578476-20578524,20578700-20578909,20579496-20579803	AT1G55160.1  CDS  gene_syn T7N22.11  go_component mitochondrion|GO:0005739|15276431|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19530.1); Has 27 Blast hits to 27 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G55160.1p  transcript_id AT1G55160.1  protein_id AT1G55160.1p  transcript_id AT1G55160.1  
At1g55160	chr1:020578804	0.0	W/20578804-20578909,20579496-20579803	AT1G55160.2  CDS  gene_syn T7N22.11  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19530.1); Has 27 Blast hits to 27 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G55160.2p  transcript_id AT1G55160.2  protein_id AT1G55160.2p  transcript_id AT1G55160.2  
At1g55170	chr1:020580578	0.0	W/20580578-20581131,20581235-20581380,20581466-20581542,20581632-20581706	AT1G55170.1  CDS  gene_syn T7N22.12, T7N22_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 10938 Blast hits to 7189 proteins in 548 species: Archae - 232; Bacteria - 908; Metazoa - 6113; Fungi - 676; Plants - 384; Viruses - 32; Other Eukaryotes - 2593 (source: NCBI BLink).  protein_id AT1G55170.1p  transcript_id AT1G55170.1  protein_id AT1G55170.1p  transcript_id AT1G55170.1  
At1g55175	chr1:020582965	0.0	W/20582965-20583065,20583263-20583360,20583710-20583785,20584059-20584135,20584297-20584430	AT1G55175.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24300.1).  protein_id AT1G55175.1p  transcript_id AT1G55175.1  protein_id AT1G55175.1p  transcript_id AT1G55175.1  
At1g55180	chr1:020587537	0.0	C/20587537-20587629,20586067-20587448,20585598-20585983,20585057-20585484	AT1G55180.1  CDS  gene_syn F7A10.25, F7A10_25, PHOSPHOLIPASE D ALPHA 4, PLDALPHA4, PLDEPSILON  gene PLDEPSILON  function member of C2-PLD. subfamily Represents a phospholipase D (PLD) gene with four exons, hence it is a member of the alpha class. Its amino acid sequence is quite different from other PLDs, therefore it might possess unique structural and/or catalytic properties.  go_component plasma membrane|GO:0005886|19143999|IDA  go_process response to osmotic stress|GO:0006970|19143999|IMP  go_process cellular response to nitrogen starvation|GO:0006995|19143999|IMP  go_process phospholipid catabolic process|GO:0009395|11891260|TAS  go_process phospholipid catabolic process|GO:0009395|19143999|IDA  go_process post-embryonic development|GO:0009791|19143999|IMP  go_process cellular response to phosphate starvation|GO:0016036|19143999|IMP  go_process cell growth|GO:0016049|19143999|IMP  go_process positive regulation of nitrogen utilization|GO:0045848|19143999|IMP  go_process root development|GO:0048364|19143999|IMP  go_process cell division|GO:0051301|19143999|IMP  go_process cellular response to potassium ion starvation|GO:0051365|19143999|IMP  go_function phospholipase D activity|GO:0004630|19143999|IDA  go_function phospholipase D activity|GO:0004630||ISS  product PLDEPSILON (PHOSPHOLIPASE D ALPHA 4); phospholipase D  note PHOSPHOLIPASE D ALPHA 4 (PLDEPSILON); FUNCTIONS IN: phospholipase D activity; INVOLVED IN: in 10 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phospholipase D (InterPro:IPR015679), Phospholipase D, plant (InterPro:IPR011402), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: PLDALPHA2 (phosphlipase d alpha 2); phospholipase D (TAIR:AT1G52570.1); Has 1326 Blast hits to 1010 proteins in 288 species: Archae - 0; Bacteria - 377; Metazoa - 269; Fungi - 286; Plants - 316; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT1G55180.1p  transcript_id AT1G55180.1  protein_id AT1G55180.1p  transcript_id AT1G55180.1  
At1g55190	chr1:020588450	0.0	W/20588450-20589019	AT1G55190.1  CDS  gene_syn F7A10.20, F7A10_20, PRA1.F2, PRA7, PRENYLATED RAB ACCEPTOR 1.F2  gene PRA7  go_component plasma membrane|GO:0005886|17151019|IDA  go_component endoplasmic reticulum|GO:0005783|18583532|IDA  go_process vesicle-mediated transport|GO:0016192|18583532|IDA  product PRA7  note PRA7; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: PRA8 (TAIR:AT3G13720.1); Has 346 Blast hits to 346 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 71; Fungi - 62; Plants - 181; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT1G55190.1p  transcript_id AT1G55190.1  protein_id AT1G55190.1p  transcript_id AT1G55190.1  
At1g55200	chr1:020591875	0.0	C/20591875-20592049,20591632-20591786,20591460-20591554,20590406-20591376,20590151-20590311,20589999-20590075,20589774-20589921,20589502-20589651,20589309-20589407	AT1G55200.1  CDS  gene_syn F7A10.8, F7A10_8  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase, active site (InterPro:IPR008266), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G13690.1); Has 79549 Blast hits to 78714 proteins in 3057 species: Archae - 46; Bacteria - 7388; Metazoa - 35021; Fungi - 5883; Plants - 18065; Viruses - 290; Other Eukaryotes - 12856 (source: NCBI BLink).  protein_id AT1G55200.1p  transcript_id AT1G55200.1  protein_id AT1G55200.1p  transcript_id AT1G55200.1  
At1g55205	chr1:020594584	0.0	W/20594584-20594738,20594938-20595056,20595658-20595677	AT1G55205.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13674.1); Has 85 Blast hits to 85 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G55205.1p  transcript_id AT1G55205.1  protein_id AT1G55205.1p  transcript_id AT1G55205.1  
At1g55205	chr1:020594584	0.0	W/20594584-20594738,20594938-20595094	AT1G55205.2  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13674.1); Has 73 Blast hits to 73 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G55205.2p  transcript_id AT1G55205.2  protein_id AT1G55205.2p  transcript_id AT1G55205.2  
At1g55210	chr1:020598057	0.0	C/20598057-20598620	AT1G55210.1  CDS  gene_syn F7A10.7, F7A10_7  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_process lignan biosynthetic process|GO:0009807||ISS  go_function molecular_function|GO:0003674||ND  product disease resistance response  note disease resistance response; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lignan biosynthetic process, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: disease resistance-responsive protein-related / dirigent protein-related (TAIR:AT5G49040.1); Has 472 Blast hits to 471 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 472; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G55210.1p  transcript_id AT1G55210.1  protein_id AT1G55210.1p  transcript_id AT1G55210.1  
At1g55221	chr1:020601014	0.0	W/20601014-20601794	AT1G55221.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G55240  
At1g55220	chr1:020601157	0.0	C/20601157-20601436,20600883-20601097	AT1G55220.1  CDS  gene_syn F7A10.6, F7A10_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G55220.1p  transcript_id AT1G55220.1  protein_id AT1G55220.1p  transcript_id AT1G55220.1  
At1g55230	chr1:020602895	0.0	W/20602895-20603797	AT1G55230.1  CDS  gene_syn F7A10.19, F7A10_19  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55240.1); Has 273 Blast hits to 269 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 142; Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G55230.1p  transcript_id AT1G55230.1  protein_id AT1G55230.1p  transcript_id AT1G55230.1  
At1g55240	chr1:020605015	0.0	W/20605015-20605525,20605761-20606185	AT1G55240.1  CDS  gene_syn F7A10.18, F7A10_18  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, flower, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55230.1); Has 280 Blast hits to 276 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 150; Fungi - 0; Plants - 130; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G55240.1p  transcript_id AT1G55240.1  protein_id AT1G55240.1p  transcript_id AT1G55240.1  
At1g55250	chr1:020607214	0.0	W/20607214-20607390,20607532-20607693,20607793-20607880,20607974-20608198,20608272-20608439,20608608-20608798,20608893-20608976,20609064-20609183,20609270-20609456,20609537-20609697,20610178-20610249,20610473-20610549,20610625-20610819,20610918-20610990,20611098-20611184,20611334-20611471,20611557-20611759,20611837-20611999,20612171-20612302	AT1G55250.1  CDS  gene_syn F7A10.17, F7A10_17, HISTONE MONO-UBIQUITINATION 2, HUB2  gene HUB2  function Encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B.  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product HUB2 (HISTONE MONO-UBIQUITINATION 2); protein binding / zinc ion binding  note HISTONE MONO-UBIQUITINATION 2 (HUB2); FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: HUB1 (HISTONE MONO-UBIQUITINATION 1); protein binding / protein homodimerization/ ubiquitin-protein ligase/ zinc ion binding (TAIR:AT2G44950.1); Has 15268 Blast hits to 9890 proteins in 635 species: Archae - 134; Bacteria - 932; Metazoa - 8717; Fungi - 1196; Plants - 593; Viruses - 62; Other Eukaryotes - 3634 (source: NCBI BLink).  protein_id AT1G55250.1p  transcript_id AT1G55250.1  protein_id AT1G55250.1p  transcript_id AT1G55250.1  
At1g55250	chr1:020610166	0.0	W/20610166-20610249,20610473-20610549,20610625-20610819,20610918-20610990,20611098-20611184,20611334-20611471,20611557-20611759,20611837-20611999,20612171-20612302	AT1G55250.2  CDS  gene_syn F7A10.17, F7A10_17, HISTONE MONO-UBIQUITINATION 2, HUB2  gene HUB2  function Encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B.  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product HUB2 (HISTONE MONO-UBIQUITINATION 2); protein binding / zinc ion binding  note HISTONE MONO-UBIQUITINATION 2 (HUB2); FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: HUB1 (HISTONE MONO-UBIQUITINATION 1); protein binding / protein homodimerization/ ubiquitin-protein ligase/ zinc ion binding (TAIR:AT2G44950.1).  protein_id AT1G55250.2p  transcript_id AT1G55250.2  protein_id AT1G55250.2p  transcript_id AT1G55250.2  
At1g55260	chr1:020614663	0.0	W/20614663-20615128,20615810-20615914,20616046-20616158	AT1G55260.1  CDS  gene_syn F7A10.16, F7A10_16  go_component nucleus|GO:0005634|14617066|IDA  go_process lipid transport|GO:0006869||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product lipid binding  note lipid binding; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: nucleus, anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: lipid transfer protein-related (TAIR:AT2G44300.1); Has 288 Blast hits to 286 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 287; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G55260.1p  transcript_id AT1G55260.1  protein_id AT1G55260.1p  transcript_id AT1G55260.1  
At1g55265	chr1:020617326	0.0	W/20617326-20617853	AT1G55265.1  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19860.1); Has 266 Blast hits to 266 proteins in 15 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 259; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G55265.1p  transcript_id AT1G55265.1  protein_id AT1G55265.1p  transcript_id AT1G55265.1  
At1g55270	chr1:020619860	0.0	C/20619860-20619925,20618333-20619571	AT1G55270.1  CDS  gene_syn F7A10.28  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT1G22040.1); Has 7453 Blast hits to 4099 proteins in 319 species: Archae - 10; Bacteria - 210; Metazoa - 6084; Fungi - 8; Plants - 701; Viruses - 166; Other Eukaryotes - 274 (source: NCBI BLink).  protein_id AT1G55270.1p  transcript_id AT1G55270.1  protein_id AT1G55270.1p  transcript_id AT1G55270.1  
At1g55280	chr1:020624383	0.0	C/20624383-20624533,20623840-20624196,20623099-20623763	AT1G55280.1  CDS  gene_syn F7A10.4, F7A10_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976); Has 27 Blast hits to 27 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G55280.1p  transcript_id AT1G55280.1  protein_id AT1G55280.1p  transcript_id AT1G55280.1  
At1g55290	chr1:020626886	0.0	C/20626886-20627397,20626208-20626781	AT1G55290.1  CDS  gene_syn F7A10.24, F7A10_24  function encodes a protein whose sequence is similar to oxidoreductase, 2OG-Fe(II) oxygenase  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706|9112784|ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT3G13610.1); Has 6132 Blast hits to 6108 proteins in 692 species: Archae - 0; Bacteria - 732; Metazoa - 126; Fungi - 675; Plants - 3103; Viruses - 0; Other Eukaryotes - 1496 (source: NCBI BLink).  protein_id AT1G55290.1p  transcript_id AT1G55290.1  protein_id AT1G55290.1p  transcript_id AT1G55290.1  
At1g55300	chr1:020629376	0.0	C/20629376-20629490,20628868-20629001,20628651-20628770,20628154-20628504	AT1G55300.2  CDS  gene_syn F7A10.3, F7A10_3, TAF7, TBP-ASSOCIATED FACTOR 7  gene TAF7  go_component transcription factor TFIID complex|GO:0005669||IEA  go_process transcription initiation from RNA polymerase II promoter|GO:0006367||IEA  go_function general RNA polymerase II transcription factor activity|GO:0016251||IEA  product TAF7 (TBP-ASSOCIATED FACTOR 7); general RNA polymerase II transcription factor  note TBP-ASSOCIATED FACTOR 7 (TAF7); FUNCTIONS IN: general RNA polymerase II transcription factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: transcription factor TFIID complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TAFII55 protein conserved region (InterPro:IPR006751); Has 276 Blast hits to 276 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 59; Plants - 29; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT1G55300.2p  transcript_id AT1G55300.2  protein_id AT1G55300.2p  transcript_id AT1G55300.2  
At1g55300	chr1:020629376	0.0	C/20629376-20629490,20628868-20629001,20628651-20628770,20628439-20628504,20628170-20628346	AT1G55300.1  CDS  gene_syn F7A10.3, F7A10_3, TAF7, TBP-ASSOCIATED FACTOR 7  gene TAF7  go_component transcription factor TFIID complex|GO:0005669||IEA  go_process transcription initiation from RNA polymerase II promoter|GO:0006367||IEA  go_function general RNA polymerase II transcription factor activity|GO:0016251||IEA  product TAF7 (TBP-ASSOCIATED FACTOR 7); general RNA polymerase II transcription factor  note TBP-ASSOCIATED FACTOR 7 (TAF7); FUNCTIONS IN: general RNA polymerase II transcription factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: transcription factor TFIID complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TAFII55 protein conserved region (InterPro:IPR006751); Has 280 Blast hits to 280 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 165; Fungi - 59; Plants - 29; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT1G55300.1p  transcript_id AT1G55300.1  protein_id AT1G55300.1p  transcript_id AT1G55300.1  
At1g55310	chr1:020630676	0.0	W/20630676-20630818,20631042-20631119,20631885-20632055,20632151-20632279,20632353-20632477,20632551-20632567	AT1G55310.2  CDS  gene_syn ATSCL33, F7A10.26, F7A10.27, F7A10_26, SC35-LIKE SPLICING FACTOR 33, SCL33, SR33  gene SR33  function Encodes a SR spliceosome protein that is localized to nuclear specks, interacts with SR45 and the U1-70K protein of the U1 snRNP, has sequence similar to human SC35 protein.  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|14506206|IDA  go_component nuclear speck|GO:0016607|15133128|IDA  go_component interchromatin granule|GO:0035061|15034145|IDA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|10593939|IPI  go_process RNA splicing|GO:0008380|16807317|NAS  go_function RNA binding|GO:0003723|10593939|ISS  go_function RNA binding|GO:0003723||ISS  go_function protein binding|GO:0005515|10593939|IPI  product SR33; RNA binding / protein binding  note SR33; FUNCTIONS IN: protein binding, RNA binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: interchromatin granule, nuclear speck, nucleolus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: SCL30a; RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT3G13570.1); Has 15286 Blast hits to 12820 proteins in 554 species: Archae - 2; Bacteria - 816; Metazoa - 9115; Fungi - 1917; Plants - 2095; Viruses - 27; Other Eukaryotes - 1314 (source: NCBI BLink).  protein_id AT1G55310.2p  transcript_id AT1G55310.2  protein_id AT1G55310.2p  transcript_id AT1G55310.2  
At1g55310	chr1:020630676	0.0	W/20630676-20630818,20631042-20631119,20631885-20632055,20632151-20632279,20632353-20632695	AT1G55310.1  CDS  gene_syn ATSCL33, F7A10.26, F7A10.27, F7A10_26, SC35-LIKE SPLICING FACTOR 33, SCL33, SR33  gene SR33  function Encodes a SR spliceosome protein that is localized to nuclear specks, interacts with SR45 and the U1-70K protein of the U1 snRNP, has sequence similar to human SC35 protein.  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|14506206|IDA  go_component nuclear speck|GO:0016607|15133128|IDA  go_component interchromatin granule|GO:0035061|15034145|IDA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|10593939|IPI  go_process RNA splicing|GO:0008380|16807317|NAS  go_function RNA binding|GO:0003723|10593939|ISS  go_function RNA binding|GO:0003723||ISS  go_function protein binding|GO:0005515|10593939|IPI  product SR33; RNA binding / protein binding  note SR33; FUNCTIONS IN: protein binding, RNA binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: interchromatin granule, nuclear speck, nucleolus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: SCL30a; RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT3G13570.1); Has 14980 Blast hits to 12560 proteins in 546 species: Archae - 2; Bacteria - 816; Metazoa - 8928; Fungi - 1863; Plants - 2056; Viruses - 18; Other Eukaryotes - 1297 (source: NCBI BLink).  protein_id AT1G55310.1p  transcript_id AT1G55310.1  protein_id AT1G55310.1p  transcript_id AT1G55310.1  
At1g55320	chr1:020633371	0.0	W/20633371-20633639,20633729-20633858,20633941-20634191,20634283-20634484,20634566-20634606,20634702-20634830,20634905-20634981,20635060-20635280,20635365-20635459,20635537-20635753,20635830-20635955,20636048-20636146,20636240-20636449,20636543-20636659	AT1G55320.1  CDS  gene_syn AAE18, ACYL-ACTIVATING ENZYME 18, F7A10.14, F7A10_14  gene AAE18  function Encodes a protein with similarity to acyl activating enzymes. AAE18 is localized to the peroxisome where it may be involved in metabolism of auxin precursors to active auxins.  go_function catalytic activity|GO:0003824||IEA  go_component peroxisome|GO:0005777|19043666|IDA  go_process metabolic process|GO:0008152||ISS  go_process auxin metabolic process|GO:0009850|19043666|IMP  go_function ligase activity|GO:0016874||ISS  product AAE18 (ACYL-ACTIVATING ENZYME 18); catalytic/ ligase  note ACYL-ACTIVATING ENZYME 18 (AAE18); FUNCTIONS IN: catalytic activity, ligase activity; INVOLVED IN: auxin metabolic process, metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AAE17 (ACYL-ACTIVATING ENZYME 17); catalytic/ ligase (TAIR:AT5G23050.1); Has 20000 Blast hits to 19721 proteins in 1395 species: Archae - 375; Bacteria - 9364; Metazoa - 810; Fungi - 567; Plants - 197; Viruses - 0; Other Eukaryotes - 8687 (source: NCBI BLink).  protein_id AT1G55320.1p  transcript_id AT1G55320.1  protein_id AT1G55320.1p  transcript_id AT1G55320.1  
At1g55320	chr1:020634194	0.0	W/20634194-20634195,20634283-20634484,20634566-20634606,20634702-20634830,20634905-20634981,20635060-20635280,20635365-20635459,20635537-20635753,20635830-20635955,20636048-20636146,20636240-20636449,20636543-20636659	AT1G55320.2  CDS  gene_syn AAE18, ACYL-ACTIVATING ENZYME 18, F7A10.14, F7A10_14  gene AAE18  function Encodes a protein with similarity to acyl activating enzymes. AAE18 is localized to the peroxisome where it may be involved in metabolism of auxin precursors to active auxins.  go_function catalytic activity|GO:0003824||IEA  go_component peroxisome|GO:0005777|19043666|IDA  go_process metabolic process|GO:0008152||ISS  go_process auxin metabolic process|GO:0009850|19043666|IMP  go_function ligase activity|GO:0016874||ISS  product AAE18 (ACYL-ACTIVATING ENZYME 18); catalytic/ ligase  note ACYL-ACTIVATING ENZYME 18 (AAE18); FUNCTIONS IN: catalytic activity, ligase activity; INVOLVED IN: auxin metabolic process, metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AAE17 (ACYL-ACTIVATING ENZYME 17); catalytic/ ligase (TAIR:AT5G23050.1); Has 18244 Blast hits to 18011 proteins in 1367 species: Archae - 361; Bacteria - 8769; Metazoa - 749; Fungi - 537; Plants - 173; Viruses - 0; Other Eukaryotes - 7655 (source: NCBI BLink).  protein_id AT1G55320.2p  transcript_id AT1G55320.2  protein_id AT1G55320.2p  transcript_id AT1G55320.2  
At1g55325	chr1:020637594	0.0	W/20637594-20637617,20637699-20637772,20637866-20638005,20638092-20638178,20638340-20638427,20638517-20638594,20638842-20638919,20639009-20639088,20639342-20639396,20639493-20639606,20639716-20640042,20640588-20640822,20640989-20641037,20641118-20641263,20641504-20642859,20643098-20643275,20643371-20643548,20643743-20643830,20643933-20644069,20644160-20644439,20644536-20645421,20645509-20645625,20645773-20646138,20646271-20646875	AT1G55325.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAP240 (InterPro:IPR009401); Has 190 Blast hits to 182 proteins in 65 species: Archae - 0; Bacteria - 45; Metazoa - 113; Fungi - 3; Plants - 23; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G55325.1p  transcript_id AT1G55325.1  protein_id AT1G55325.1p  transcript_id AT1G55325.1  
At1g55330	chr1:020648634	0.0	C/20648634-20648810	AT1G55330.1  CDS  gene_syn AGP21, Arabinogalactan protein 21, AtAGP21, F7A10.11, F7A10_11  gene AGP21  function Encodes a putative arabinogalactan-protein (AGP21).  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  product AGP21  note AGP21; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 29 Blast hits to 29 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G55330.1p  transcript_id AT1G55330.1  protein_id AT1G55330.1p  transcript_id AT1G55330.1  
At1g55340	chr1:020652605	0.0	W/20652605-20652822,20652902-20653172,20653248-20653325,20653419-20653469	AT1G55340.1  CDS  gene_syn F7A10.13, F7A10_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03880.1); Has 133 Blast hits to 133 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G55340.1p  transcript_id AT1G55340.1  protein_id AT1G55340.1p  transcript_id AT1G55340.1  
At1g55340	chr1:020652605	0.0	W/20652605-20652822,20652932-20653172,20653248-20653325,20653419-20653469	AT1G55340.2  CDS  gene_syn F7A10.13, F7A10_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03880.1).  protein_id AT1G55340.2p  transcript_id AT1G55340.2  protein_id AT1G55340.2p  transcript_id AT1G55340.2  
At1g55350	chr1:020664377	0.0	C/20664377-20664501,20663984-20664234,20663599-20663781,20663286-20663421,20662864-20662994,20662655-20662769,20661551-20662559,20661289-20661399,20661119-20661177,20660808-20660967,20660451-20660724,20660208-20660358,20660007-20660115,20659756-20659921,20659599-20659669,20659437-20659528,20659155-20659317,20658982-20659053,20658470-20658847,20658281-20658396,20657897-20658194,20657493-20657812,20656992-20657343,20656563-20656880,20656305-20656409,20656062-20656190,20655560-20655940,20655338-20655475,20654855-20655091,20654463-20654768	AT1G55350.1  CDS  gene_syn ATDEK1, DEFECTIVE KERNEL 1, DEK1, EMB1275, F7A10.23, F7A10_23, embryo defective 1275  gene DEK1  function Similar to maize DEK1, a gene encoding a membrane protein of the calpain gene superfamily required for aleurone cell development in the endosperm of maize grains. A key component of the embryonic L1 cell-layer specification pathway.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function calcium-dependent cysteine-type endopeptidase activity|GO:0004198||IEA  go_component plasma membrane|GO:0005886|17933905|IDA  go_process cell fate specification|GO:0001708|15647902|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|15647902|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process endosperm development|GO:0009960|15647902|IMP  product DEK1 (DEFECTIVE KERNEL 1); calcium-dependent cysteine-type endopeptidase/ cysteine-type endopeptidase  note DEFECTIVE KERNEL 1 (DEK1); FUNCTIONS IN: cysteine-type endopeptidase activity, calcium-dependent cysteine-type endopeptidase activity; INVOLVED IN: embryonic development ending in seed dormancy, cell fate specification, endosperm development; LOCATED IN: plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase, cysteine peptidase active site (InterPro:IPR000169), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Peptidase C2, calpain (InterPro:IPR001300); Has 3409 Blast hits to 2039 proteins in 188 species: Archae - 0; Bacteria - 66; Metazoa - 1720; Fungi - 190; Plants - 54; Viruses - 0; Other Eukaryotes - 1379 (source: NCBI BLink).  protein_id AT1G55350.1p  transcript_id AT1G55350.1  protein_id AT1G55350.1p  transcript_id AT1G55350.1  
At1g55350	chr1:020664377	0.0	C/20664377-20664501,20663984-20664234,20663599-20663781,20663286-20663421,20662864-20662994,20662655-20662769,20661551-20662559,20661289-20661399,20661119-20661177,20660808-20660967,20660451-20660724,20660208-20660358,20660007-20660115,20659756-20659921,20659599-20659669,20659437-20659528,20659155-20659317,20658982-20659053,20658470-20658847,20658281-20658396,20657897-20658194,20657493-20657812,20656992-20657343,20656563-20656880,20656305-20656409,20656062-20656190,20655560-20655940,20655338-20655475,20654855-20655091,20654463-20654768	AT1G55350.2  CDS  gene_syn ATDEK1, DEFECTIVE KERNEL 1, DEK1, EMB1275, F7A10.23, F7A10_23, embryo defective 1275  gene DEK1  function Similar to maize DEK1, a gene encoding a membrane protein of the calpain gene superfamily required for aleurone cell development in the endosperm of maize grains. A key component of the embryonic L1 cell-layer specification pathway.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function calcium-dependent cysteine-type endopeptidase activity|GO:0004198||IEA  go_component plasma membrane|GO:0005886|17933905|IDA  go_process cell fate specification|GO:0001708|15647902|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|15647902|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process endosperm development|GO:0009960|15647902|IMP  product DEK1 (DEFECTIVE KERNEL 1); calcium-dependent cysteine-type endopeptidase/ cysteine-type endopeptidase  note DEFECTIVE KERNEL 1 (DEK1); FUNCTIONS IN: cysteine-type endopeptidase activity, calcium-dependent cysteine-type endopeptidase activity; INVOLVED IN: embryonic development ending in seed dormancy, cell fate specification, endosperm development; LOCATED IN: plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase, cysteine peptidase active site (InterPro:IPR000169), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Peptidase C2, calpain (InterPro:IPR001300); Has 3409 Blast hits to 2039 proteins in 188 species: Archae - 0; Bacteria - 66; Metazoa - 1720; Fungi - 190; Plants - 54; Viruses - 0; Other Eukaryotes - 1379 (source: NCBI BLink).  protein_id AT1G55350.2p  transcript_id AT1G55350.2  protein_id AT1G55350.2p  transcript_id AT1G55350.2  
At1g55350	chr1:020664377	0.0	C/20664377-20664501,20663984-20664234,20663599-20663781,20663286-20663421,20662864-20662994,20662655-20662769,20661551-20662559,20661289-20661399,20661119-20661177,20660808-20660967,20660451-20660724,20660208-20660358,20660007-20660115,20659756-20659921,20659599-20659669,20659437-20659528,20659155-20659317,20658982-20659053,20658470-20658847,20658281-20658396,20657897-20658194,20657493-20657812,20656992-20657343,20656563-20656880,20656305-20656409,20656062-20656190,20655560-20655940,20655338-20655475,20654855-20655091,20654463-20654768	AT1G55350.3  CDS  gene_syn ATDEK1, DEFECTIVE KERNEL 1, DEK1, EMB1275, F7A10.23, F7A10_23, embryo defective 1275  gene DEK1  function Similar to maize DEK1, a gene encoding a membrane protein of the calpain gene superfamily required for aleurone cell development in the endosperm of maize grains. A key component of the embryonic L1 cell-layer specification pathway.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function calcium-dependent cysteine-type endopeptidase activity|GO:0004198||IEA  go_component plasma membrane|GO:0005886|17933905|IDA  go_process cell fate specification|GO:0001708|15647902|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|15647902|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process endosperm development|GO:0009960|15647902|IMP  product DEK1 (DEFECTIVE KERNEL 1); calcium-dependent cysteine-type endopeptidase/ cysteine-type endopeptidase  note DEFECTIVE KERNEL 1 (DEK1); FUNCTIONS IN: cysteine-type endopeptidase activity, calcium-dependent cysteine-type endopeptidase activity; INVOLVED IN: embryonic development ending in seed dormancy, cell fate specification, endosperm development; LOCATED IN: plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase, cysteine peptidase active site (InterPro:IPR000169), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Peptidase C2, calpain (InterPro:IPR001300); Has 3409 Blast hits to 2039 proteins in 188 species: Archae - 0; Bacteria - 66; Metazoa - 1720; Fungi - 190; Plants - 54; Viruses - 0; Other Eukaryotes - 1379 (source: NCBI BLink).  protein_id AT1G55350.3p  transcript_id AT1G55350.3  protein_id AT1G55350.3p  transcript_id AT1G55350.3  
At1g55350	chr1:020664377	0.0	C/20664377-20664501,20663984-20664234,20663599-20663781,20663286-20663421,20662864-20662994,20662655-20662769,20661551-20662559,20661289-20661399,20661119-20661177,20660808-20660967,20660451-20660724,20660208-20660358,20660007-20660115,20659756-20659921,20659599-20659669,20659437-20659528,20659155-20659317,20658982-20659053,20658470-20658847,20658281-20658396,20657897-20658194,20657493-20657812,20656992-20657343,20656563-20656880,20656305-20656409,20656062-20656190,20655560-20655940,20655338-20655475,20654855-20655091,20654463-20654768	AT1G55350.4  CDS  gene_syn ATDEK1, DEFECTIVE KERNEL 1, DEK1, EMB1275, F7A10.23, F7A10_23, embryo defective 1275  gene DEK1  function Similar to maize DEK1, a gene encoding a membrane protein of the calpain gene superfamily required for aleurone cell development in the endosperm of maize grains. A key component of the embryonic L1 cell-layer specification pathway.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function calcium-dependent cysteine-type endopeptidase activity|GO:0004198||IEA  go_component plasma membrane|GO:0005886|17933905|IDA  go_process cell fate specification|GO:0001708|15647902|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|15647902|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process endosperm development|GO:0009960|15647902|IMP  product DEK1 (DEFECTIVE KERNEL 1); calcium-dependent cysteine-type endopeptidase/ cysteine-type endopeptidase  note DEFECTIVE KERNEL 1 (DEK1); FUNCTIONS IN: cysteine-type endopeptidase activity, calcium-dependent cysteine-type endopeptidase activity; INVOLVED IN: embryonic development ending in seed dormancy, cell fate specification, endosperm development; LOCATED IN: plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase, cysteine peptidase active site (InterPro:IPR000169), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Peptidase C2, calpain (InterPro:IPR001300); Has 3409 Blast hits to 2039 proteins in 188 species: Archae - 0; Bacteria - 66; Metazoa - 1720; Fungi - 190; Plants - 54; Viruses - 0; Other Eukaryotes - 1379 (source: NCBI BLink).  protein_id AT1G55350.4p  transcript_id AT1G55350.4  protein_id AT1G55350.4p  transcript_id AT1G55350.4  
At1g55360	chr1:020668326	0.0	C/20668326-20668502,20668006-20668092,20667652-20667912,20667397-20667561,20667235-20667288,20666986-20667132,20666526-20666903	AT1G55360.1  CDS  gene_syn F7A10.1, F7A10_1  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13510.1); Has 441 Blast hits to 404 proteins in 18 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 10; Plants - 425; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G55360.1p  transcript_id AT1G55360.1  protein_id AT1G55360.1p  transcript_id AT1G55360.1  
At1g55365	chr1:020673983	0.0	C/20673983-20674363	AT1G55365.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56520.1); Has 10 Blast hits to 10 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G55365.1p  transcript_id AT1G55365.1  protein_id AT1G55365.1p  transcript_id AT1G55365.1  
At1g55370	chr1:020674852	0.0	W/20674852-20675089,20675169-20675800,20675877-20676071	AT1G55370.2  CDS  gene_syn NDF5, NDH-DEPENDENT CYCLIC ELECTRON FLOW 5, T18I3.2  gene NDF5  go_component chloroplast|GO:0009507|19122188|IDA  go_component membrane|GO:0016020|19122188|IDA  go_process photosynthetic electron transport in photosystem I|GO:0009773|19122188|IMP  go_process positive regulation of gene expression|GO:0010628|19122188|IMP  go_function catalytic activity|GO:0003824||IEA  go_function carbohydrate binding|GO:0030246||IEA  product carbohydrate binding / catalytic  note NDH-DEPENDENT CYCLIC ELECTRON FLOW 5 (NDF5); FUNCTIONS IN: carbohydrate binding, catalytic activity; INVOLVED IN: positive regulation of gene expression, photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013); BEST Arabidopsis thaliana protein match is: NDF2 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1); carbohydrate binding / catalytic (TAIR:AT1G64770.1); Has 99 Blast hits to 98 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G55370.2p  transcript_id AT1G55370.2  protein_id AT1G55370.2p  transcript_id AT1G55370.2  
At1g55370	chr1:020674852	0.0	W/20674852-20675089,20675169-20675857	AT1G55370.1  CDS  gene_syn NDF5, NDH-DEPENDENT CYCLIC ELECTRON FLOW 5, T18I3.2  gene NDF5  go_function catalytic activity|GO:0003824||IEA  go_function carbohydrate binding|GO:0030246||IEA  product carbohydrate binding / catalytic  note NDH-DEPENDENT CYCLIC ELECTRON FLOW 5 (NDF5); FUNCTIONS IN: carbohydrate binding, catalytic activity; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013); BEST Arabidopsis thaliana protein match is: NDF2 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1) (TAIR:AT1G64770.2); Has 35 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G55370.1p  transcript_id AT1G55370.1  protein_id AT1G55370.1p  transcript_id AT1G55370.1  
At1g55380	chr1:020676622	0.0	C/20676622-20678607	AT1G55380.1  CDS  gene_syn T18I3.4, T18I3_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: EDA11 (embryo sac development arrest 11); protein binding / zinc ion binding (TAIR:AT1G55420.1); Has 37798 Blast hits to 3281 proteins in 233 species: Archae - 12; Bacteria - 30528; Metazoa - 2200; Fungi - 713; Plants - 1370; Viruses - 83; Other Eukaryotes - 2892 (source: NCBI BLink).  protein_id AT1G55380.1p  transcript_id AT1G55380.1  protein_id AT1G55380.1p  transcript_id AT1G55380.1  
At1g55390	chr1:020680989	0.0	C/20680989-20683043	AT1G55390.1  CDS  gene_syn T18I3.3, T18I3_3  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: EDA11 (embryo sac development arrest 11); protein binding / zinc ion binding (TAIR:AT1G55420.1); Has 11071 Blast hits to 4098 proteins in 295 species: Archae - 44; Bacteria - 4127; Metazoa - 1614; Fungi - 607; Plants - 1430; Viruses - 136; Other Eukaryotes - 3113 (source: NCBI BLink).  protein_id AT1G55390.1p  transcript_id AT1G55390.1  protein_id AT1G55390.1p  transcript_id AT1G55390.1  
At1g55400	chr1:020684233	0.0	C/20684233-20684965	AT1G55400.1  mRNA_TE_gene  pseudo  gene_syn T5A14.20  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G27590.1); similar to hypothetical protein PFF0685c [Plasmodium falciparum 3D7] (GB:XP_966128.1)  
At1g55410	chr1:020688614	0.0	C/20688614-20691034	AT1G55410.1  pseudogenic_transcript  pseudo  gene_syn T5A14.17, T5A14_17  note pseudogene, CHP-rich zinc finger protein, putative, similar to putative CHP-rich zinc finger protein GB:CAB77744 GI:7268217 from (Arabidopsis thaliana)  
At1g55420	chr1:020691775	0.0	C/20691775-20693952	AT1G55420.1  CDS  gene_syn EDA11, T5A14.16, T5A14_16, embryo sac development arrest 11  gene EDA11  go_component chloroplast|GO:0009507||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process megagametogenesis|GO:0009561|15634699|IMP  product EDA11 (embryo sac development arrest 11); protein binding / zinc ion binding  note embryo sac development arrest 11 (EDA11); FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: megagametogenesis; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT1G55380.1); Has 29039 Blast hits to 2516 proteins in 223 species: Archae - 49; Bacteria - 24586; Metazoa - 959; Fungi - 240; Plants - 1146; Viruses - 58; Other Eukaryotes - 2001 (source: NCBI BLink).  protein_id AT1G55420.1p  transcript_id AT1G55420.1  protein_id AT1G55420.1p  transcript_id AT1G55420.1  
At1g55430	chr1:020697649	0.0	C/20697649-20699622	AT1G55430.1  CDS  gene_syn T5A14.18, T5A14_18  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT1G55380.1); Has 1074 Blast hits to 455 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1070; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G55430.1p  transcript_id AT1G55430.1  protein_id AT1G55430.1p  transcript_id AT1G55430.1  
At1g55440	chr1:020701499	0.0	C/20701499-20703460	AT1G55440.1  CDS  gene_syn T5A14.15, T5A14_15  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT5G42280.1); Has 40963 Blast hits to 1881 proteins in 209 species: Archae - 2; Bacteria - 37482; Metazoa - 1128; Fungi - 324; Plants - 1005; Viruses - 51; Other Eukaryotes - 971 (source: NCBI BLink).  protein_id AT1G55440.1p  transcript_id AT1G55440.1  protein_id AT1G55440.1p  transcript_id AT1G55440.1  
At1g55450	chr1:020706676	0.0	C/20706676-20706825,20705608-20706234,20705436-20705529,20705274-20705338	AT1G55450.1  CDS  gene_syn T5A14.14, T5A14_14  go_process response to salt stress|GO:0009651|17916636|IEP  go_function methyltransferase activity|GO:0008168||IEA  product embryo-abundant protein-related  note embryo-abundant protein-related; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: response to salt stress; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: embryo-abundant protein-related (TAIR:AT3G54150.1); Has 634 Blast hits to 630 proteins in 232 species: Archae - 4; Bacteria - 330; Metazoa - 59; Fungi - 75; Plants - 109; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT1G55450.1p  transcript_id AT1G55450.1  protein_id AT1G55450.1p  transcript_id AT1G55450.1  
At1g55460	chr1:020707567	0.0	W/20707567-20708802	AT1G55460.1  CDS  gene_syn T5A14.13, T5A14_13  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product Kin17 DNA-binding protein-related  note Kin17 DNA-binding protein-related; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), KOW (InterPro:IPR005824); BEST Arabidopsis thaliana protein match is: Kin17 DNA-binding protein-related (TAIR:AT5G51795.1); Has 1728 Blast hits to 1387 proteins in 186 species: Archae - 1; Bacteria - 19; Metazoa - 714; Fungi - 194; Plants - 93; Viruses - 13; Other Eukaryotes - 694 (source: NCBI BLink).  protein_id AT1G55460.1p  transcript_id AT1G55460.1  protein_id AT1G55460.1p  transcript_id AT1G55460.1  
At1g55470	chr1:020709477	0.0	C/20709477-20711311	AT1G55470.1  mRNA_TE_gene  pseudo  gene_syn T5A14.19  note Transposable element gene, pseudogene, similar to putative non-LTR retroelement reverse transcriptase, blastp match of 31% identity and 3.4e-27 P-value to GP|10140689|gb|AAG13524.1|AC068924_29|AC068924 putative non-LTR retroelement reverse transcriptase {Oryza sativa (japonica cultivar-group)}  
At1g55475	chr1:020711977	0.0	W/20711977-20712028,20712115-20712367,20712529-20712586	AT1G55475.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13480.1); Has 42 Blast hits to 42 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G55475.1p  transcript_id AT1G55475.1  protein_id AT1G55475.1p  transcript_id AT1G55475.1  
At1g55480	chr1:020713822	0.0	W/20713822-20714228,20714317-20714423,20714536-20714630,20714718-20714794,20714873-20714993,20715063-20715122,20715211-20715351	AT1G55480.1  CDS  gene_syn T5A14.12, T5A14_12  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  product binding / protein binding  note binding / protein binding; FUNCTIONS IN: protein binding, binding; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), PDZ/DHR/GLGF (InterPro:IPR001478), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: LPA1 (LOW PSII ACCUMULATION1); binding (TAIR:AT1G02910.1); Has 203 Blast hits to 203 proteins in 54 species: Archae - 0; Bacteria - 65; Metazoa - 7; Fungi - 2; Plants - 97; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT1G55480.1p  transcript_id AT1G55480.1  protein_id AT1G55480.1p  transcript_id AT1G55480.1  
At1g55490	chr1:020718458	0.0	C/20718458-20718673,20718234-20718359,20718017-20718154,20717839-20717934,20717512-20717754,20717162-20717396,20716905-20717074,20716739-20716816,20716580-20716651,20716393-20716497,20716226-20716318,20716046-20716138,20715830-20715953,20715717-20715730	AT1G55490.1  CDS  gene_syn CHAPERONIN 60 BETA, CPN60B, CPN60BETA, LEN1, LESION INITIATION 1, T5A14.11, T5A14_11  gene CPN60B  function encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acquired resistance (SAR) and develops accelerated cell death to heat shock stress. The protein has molecular chaperone activity for suppressing protein aggregation in vitro.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component chloroplast|GO:0009507|1347275|NAS  go_component stromule|GO:0010319|16923014|IDA  go_process protein folding|GO:0006457||TAS  go_process cell death|GO:0008219|12668771|IMP  go_process response to cold|GO:0009409|16923014|IEP  go_process systemic acquired resistance|GO:0009627|12668771|IMP  go_process chaperone mediated protein folding requiring cofactor|GO:0051085|12668771|IDA  product CPN60B (CHAPERONIN 60 BETA); ATP binding / protein binding  note CHAPERONIN 60 BETA (CPN60B); FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: protein folding, systemic acquired resistance, response to cold, cell death, chaperone mediated protein folding requiring cofactor; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: chaperonin, putative (TAIR:AT3G13470.1); Has 24466 Blast hits to 24438 proteins in 5130 species: Archae - 391; Bacteria - 14010; Metazoa - 1516; Fungi - 957; Plants - 450; Viruses - 2; Other Eukaryotes - 7140 (source: NCBI BLink).  protein_id AT1G55490.1p  transcript_id AT1G55490.1  protein_id AT1G55490.1p  transcript_id AT1G55490.1  
At1g55490	chr1:020718458	0.0	C/20718458-20718673,20718234-20718359,20718017-20718154,20717839-20717934,20717512-20717754,20717162-20717396,20716905-20717074,20716739-20716816,20716580-20716651,20716393-20716497,20716226-20716318,20716046-20716138,20715830-20715953,20715717-20715730	AT1G55490.2  CDS  gene_syn CHAPERONIN 60 BETA, CPN60B, CPN60BETA, LEN1, LESION INITIATION 1, T5A14.11, T5A14_11  gene CPN60B  function encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acquired resistance (SAR) and develops accelerated cell death to heat shock stress. The protein has molecular chaperone activity for suppressing protein aggregation in vitro.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component chloroplast|GO:0009507|1347275|NAS  go_component stromule|GO:0010319|16923014|IDA  go_process protein folding|GO:0006457||TAS  go_process cell death|GO:0008219|12668771|IMP  go_process response to cold|GO:0009409|16923014|IEP  go_process systemic acquired resistance|GO:0009627|12668771|IMP  go_process chaperone mediated protein folding requiring cofactor|GO:0051085|12668771|IDA  product CPN60B (CHAPERONIN 60 BETA); ATP binding / protein binding  note CHAPERONIN 60 BETA (CPN60B); FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: protein folding, systemic acquired resistance, response to cold, cell death, chaperone mediated protein folding requiring cofactor; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: chaperonin, putative (TAIR:AT3G13470.1); Has 24466 Blast hits to 24438 proteins in 5130 species: Archae - 391; Bacteria - 14010; Metazoa - 1516; Fungi - 957; Plants - 450; Viruses - 2; Other Eukaryotes - 7140 (source: NCBI BLink).  protein_id AT1G55490.2p  transcript_id AT1G55490.2  protein_id AT1G55490.2p  transcript_id AT1G55490.2  
At1g55500	chr1:020720203	0.0	W/20720203-20720323,20720416-20720471,20720609-20721091,20721178-20721750,20721834-20722046,20722146-20722292,20722394-20722450	AT1G55500.1  CDS  gene_syn ECT4, T5A14.10, T5A14_10  gene ECT4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ECT4  note ECT4; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: YT521-B-like protein (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: ECT2; protein binding (TAIR:AT3G13460.4); Has 1191 Blast hits to 1025 proteins in 148 species: Archae - 0; Bacteria - 10; Metazoa - 662; Fungi - 193; Plants - 207; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT1G55500.1p  transcript_id AT1G55500.1  protein_id AT1G55500.1p  transcript_id AT1G55500.1  
At1g55510	chr1:020723482	0.0	W/20723482-20723633,20723802-20723913,20724000-20724035,20724108-20724167,20724239-20724296,20724380-20724567,20724649-20724717,20724787-20724873,20724948-20725043,20725135-20725212,20725301-20725387,20725470-20725505	AT1G55510.1  CDS  gene_syn BCDH BETA1, BRANCHED-CHAIN ALPHA-KETO ACID DECARBOXYLASE E1 BETA SUBUNIT, T5A14.9, T5A14_9  gene BCDH BETA1  function branched-chain alpha-keto acid decarboxylase E1 beta  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity|GO:0003863||ISS  product BCDH BETA1 (BRANCHED-CHAIN ALPHA-KETO ACID DECARBOXYLASE E1 BETA SUBUNIT); 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring)/ catalytic  note BRANCHED-CHAIN ALPHA-KETO ACID DECARBOXYLASE E1 BETA SUBUNIT (BCDH BETA1); FUNCTIONS IN: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, C-terminal (InterPro:IPR005476), Transketolase C-terminal-like (InterPro:IPR015941), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase, central region (InterPro:IPR005475); BEST Arabidopsis thaliana protein match is: DIN4 (DARK INDUCIBLE 4); 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring)/ catalytic (TAIR:AT3G13450.1); Has 11071 Blast hits to 11063 proteins in 1561 species: Archae - 101; Bacteria - 5725; Metazoa - 434; Fungi - 143; Plants - 228; Viruses - 0; Other Eukaryotes - 4440 (source: NCBI BLink).  protein_id AT1G55510.1p  transcript_id AT1G55510.1  protein_id AT1G55510.1p  transcript_id AT1G55510.1  
At1g55520	chr1:020727407	0.0	C/20727407-20727483,20727224-20727311,20727041-20727112,20726904-20726954,20726734-20726778,20726497-20726589,20726304-20726405,20726150-20726224	AT1G55520.1  CDS  gene_syn A. THALIANA TATA BINDING PROTEIN 2, ATTBP2, T5A14.8, T5A14_8, TATA BINDING PROTEIN 2, TBP2  gene TBP2  function TATA-box binding protein. Required for basal transcription. Acts facilitating the recruitment of TFIID to the promoter, which together with the RNA polymerase form the preinitiation complex.  go_component nucleus|GO:0005634||TAS  go_process transcription initiation|GO:0006352|10634912|IDA  go_function DNA binding|GO:0003677||ISS  go_function RNA polymerase II transcription factor activity|GO:0003702||ISS  go_function TATA-binding protein binding|GO:0017025|10634912|ISS  product TBP2 (TATA BINDING PROTEIN 2); DNA binding / RNA polymerase II transcription factor/ TATA-binding protein binding  note TATA BINDING PROTEIN 2 (TBP2); FUNCTIONS IN: TATA-binding protein binding, RNA polymerase II transcription factor activity, DNA binding; INVOLVED IN: transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TATA-box binding (InterPro:IPR000814), Beta2-adaptin/TATA-box binding, C-terminal (InterPro:IPR012295), Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal (InterPro:IPR012294); BEST Arabidopsis thaliana protein match is: TBP1 (TATA BINDING PROTEIN 1); DNA binding / RNA polymerase II transcription factor/ binding (TAIR:AT3G13445.1); Has 1698 Blast hits to 1295 proteins in 305 species: Archae - 490; Bacteria - 0; Metazoa - 526; Fungi - 144; Plants - 109; Viruses - 0; Other Eukaryotes - 429 (source: NCBI BLink).  protein_id AT1G55520.1p  transcript_id AT1G55520.1  protein_id AT1G55520.1p  transcript_id AT1G55520.1  
At1g55520	chr1:020727407	0.0	C/20727407-20727483,20727224-20727311,20727041-20727112,20726904-20726954,20726734-20726778,20726497-20726589,20726304-20726405,20726150-20726224	AT1G55520.2  CDS  gene_syn A. THALIANA TATA BINDING PROTEIN 2, ATTBP2, T5A14.8, T5A14_8, TATA BINDING PROTEIN 2, TBP2  gene TBP2  function TATA-box binding protein. Required for basal transcription. Acts facilitating the recruitment of TFIID to the promoter, which together with the RNA polymerase form the preinitiation complex.  go_component nucleus|GO:0005634||TAS  go_process transcription initiation|GO:0006352|10634912|IDA  go_function DNA binding|GO:0003677||ISS  go_function RNA polymerase II transcription factor activity|GO:0003702||ISS  go_function TATA-binding protein binding|GO:0017025|10634912|ISS  product TBP2 (TATA BINDING PROTEIN 2); DNA binding / RNA polymerase II transcription factor/ TATA-binding protein binding  note TATA BINDING PROTEIN 2 (TBP2); FUNCTIONS IN: TATA-binding protein binding, RNA polymerase II transcription factor activity, DNA binding; INVOLVED IN: transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TATA-box binding (InterPro:IPR000814), Beta2-adaptin/TATA-box binding, C-terminal (InterPro:IPR012295), Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal (InterPro:IPR012294); BEST Arabidopsis thaliana protein match is: TBP1 (TATA BINDING PROTEIN 1); DNA binding / RNA polymerase II transcription factor/ binding (TAIR:AT3G13445.1); Has 1698 Blast hits to 1295 proteins in 305 species: Archae - 490; Bacteria - 0; Metazoa - 526; Fungi - 144; Plants - 109; Viruses - 0; Other Eukaryotes - 429 (source: NCBI BLink).  protein_id AT1G55520.2p  transcript_id AT1G55520.2  protein_id AT1G55520.2p  transcript_id AT1G55520.2  
At1g55525	chr1:020728329	0.0	C/20728329-20728745	AT1G55525.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G55525.1  
At1g55530	chr1:020729472	0.0	C/20729472-20730527	AT1G55530.1  CDS  gene_syn T5A14.7, T5A14_7  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G56340.1); Has 7739 Blast hits to 7642 proteins in 225 species: Archae - 0; Bacteria - 8; Metazoa - 2938; Fungi - 729; Plants - 2721; Viruses - 30; Other Eukaryotes - 1313 (source: NCBI BLink).  protein_id AT1G55530.1p  transcript_id AT1G55530.1  protein_id AT1G55530.1p  transcript_id AT1G55530.1  
At1g55535	chr1:020733707	0.0	C/20733707-20733802,20733380-20733573,20732878-20733208,20732363-20732458,20732232-20732255,20732081-20732122	AT1G55535.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13420.1); Has 27 Blast hits to 27 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G55535.1p  transcript_id AT1G55535.1  protein_id AT1G55535.1p  transcript_id AT1G55535.1  
At1g55535	chr1:020733707	0.0	C/20733707-20733802,20733380-20733573,20732878-20733208,20732363-20732458,20732232-20732255,20732107-20732118	AT1G55535.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13420.1); Has 27 Blast hits to 27 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G55535.2p  transcript_id AT1G55535.2  protein_id AT1G55535.2p  transcript_id AT1G55535.2  
At1g55540	chr1:020737677	0.0	C/20737677-20737994,20737351-20737534,20736613-20737230,20734996-20736504,20734759-20734886	AT1G55540.2  CDS  gene_syn T5A14.22, emb1011, embryo defective 1011  gene emb1011  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product emb1011 (embryo defective 1011)  note embryo defective 1011 (emb1011); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; Has 49542 Blast hits to 26713 proteins in 1228 species: Archae - 63; Bacteria - 13220; Metazoa - 18104; Fungi - 6900; Plants - 3194; Viruses - 685; Other Eukaryotes - 7376 (source: NCBI BLink).  protein_id AT1G55540.2p  transcript_id AT1G55540.2  protein_id AT1G55540.2p  transcript_id AT1G55540.2  
At1g55540	chr1:020737686	0.0	C/20737686-20737994,20737351-20737534,20736613-20737230,20734996-20736504,20734759-20734886	AT1G55540.1  CDS  gene_syn T5A14.22, emb1011, embryo defective 1011  gene emb1011  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product emb1011 (embryo defective 1011)  note embryo defective 1011 (emb1011); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; Has 121494 Blast hits to 51513 proteins in 1906 species: Archae - 180; Bacteria - 29063; Metazoa - 44585; Fungi - 15113; Plants - 8736; Viruses - 1698; Other Eukaryotes - 22119 (source: NCBI BLink).  protein_id AT1G55540.1p  transcript_id AT1G55540.1  protein_id AT1G55540.1p  transcript_id AT1G55540.1  
At1g55545	chr1:020742860	0.0	C/20742860-20743049,20742570-20742778,20742319-20742487,20742064-20742210,20741673-20741794,20741413-20741525,20740859-20740998,20740608-20740773,20739583-20740525,20739250-20739402,20738987-20739094	AT1G55545.1  CDS  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; Has 87 Blast hits to 85 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 50; Fungi - 4; Plants - 8; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G55545.1p  transcript_id AT1G55545.1  protein_id AT1G55545.1p  transcript_id AT1G55545.1  
At1g55546	chr1:020743828	0.0	W/20743828-20743902,20744249-20744340,20744508-20744604,20744693-20744752,20744905-20744967,20745101-20745109	AT1G55546.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13410.1); Has 25 Blast hits to 25 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G55546.1p  transcript_id AT1G55546.1  protein_id AT1G55546.1p  transcript_id AT1G55546.1  
At1g55550	chr1:020748915	0.0	W/20748915-20749098,20749687-20749770,20749858-20750016,20750109-20750215,20750304-20750482,20750586-20750747,20750833-20751048,20751128-20751165,20751237-20751364,20751456-20752662,20752747-20752862	AT1G55550.1  CDS  gene_syn T5A14.3, T5A14_3  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function microtubule motor activity|GO:0003777||ISS  product ATP binding / microtubule motor  note ATP binding / microtubule motor; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: mitochondrion; EXPRESSED IN: seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin motor protein-related (TAIR:AT5G27950.1); Has 7755 Blast hits to 7378 proteins in 238 species: Archae - 0; Bacteria - 4; Metazoa - 3923; Fungi - 909; Plants - 890; Viruses - 0; Other Eukaryotes - 2029 (source: NCBI BLink).  protein_id AT1G55550.1p  transcript_id AT1G55550.1  protein_id AT1G55550.1p  transcript_id AT1G55550.1  
At1g55560	chr1:020756283	0.0	C/20756283-20756527,20754859-20755965,20754474-20754771	AT1G55560.1  CDS  gene_syn SKU5 Similar 14, T5A14.2, T5A14_2, sks14  gene sks14  go_component endomembrane system|GO:0012505||IEA  go_function copper ion binding|GO:0005507||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product sks14 (SKU5 Similar 14); copper ion binding / oxidoreductase  note SKU5 Similar 14 (sks14); FUNCTIONS IN: oxidoreductase activity, copper ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: sks13 (SKU5 Similar 13); copper ion binding / oxidoreductase (TAIR:AT3G13400.1); Has 3574 Blast hits to 3542 proteins in 628 species: Archae - 2; Bacteria - 957; Metazoa - 252; Fungi - 1431; Plants - 784; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink).  protein_id AT1G55560.1p  transcript_id AT1G55560.1  protein_id AT1G55560.1p  transcript_id AT1G55560.1  
At1g55570	chr1:020757882	0.0	W/20757882-20758135,20758270-20759379,20759468-20759771	AT1G55570.1  CDS  gene_syn SKU5 Similar 12, T5A14.1, T5A14_1, sks12  gene sks12  go_component endomembrane system|GO:0012505||IEA  go_function copper ion binding|GO:0005507||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product sks12 (SKU5 Similar 12); copper ion binding / oxidoreductase  note SKU5 Similar 12 (sks12); FUNCTIONS IN: oxidoreductase activity, copper ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: sks11 (SKU5 Similar 11); copper ion binding / oxidoreductase (TAIR:AT3G13390.1); Has 3729 Blast hits to 3713 proteins in 675 species: Archae - 6; Bacteria - 1076; Metazoa - 258; Fungi - 1451; Plants - 778; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).  protein_id AT1G55570.1p  transcript_id AT1G55570.1  protein_id AT1G55570.1p  transcript_id AT1G55570.1  
At1g55580	chr1:020764106	0.0	W/20764106-20765443	AT1G55580.1  CDS  gene_syn F20N2.1, LAS, Lateral Suppressor, SCARECROW-LIKE 18, SCL18  gene LAS  function Encodes a member of the GRAS family of putative transcriptional regulators. It is involved in the initiation of axillary meristems during both the vegetative and reproductive growth phases and functions upstream of REV and AXR1 in the regulation of shoot branching.  go_component chloroplast|GO:0009507||IEA  go_process secondary shoot formation|GO:0010223|12730136|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product LAS (Lateral Suppressor); transcription factor  note Lateral Suppressor (LAS); FUNCTIONS IN: transcription factor activity; INVOLVED IN: secondary shoot formation, regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: RGL2 (RGA-LIKE 2); transcription factor (TAIR:AT3G03450.1); Has 1342 Blast hits to 1320 proteins in 172 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 3; Plants - 1335; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G55580.1p  transcript_id AT1G55580.1  protein_id AT1G55580.1p  transcript_id AT1G55580.1  
At1g55590	chr1:020771607	0.0	C/20771607-20771756,20771318-20771523,20770943-20771033,20769476-20770852	AT1G55590.1  CDS  gene_syn F20N2.2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product F-box family protein  note F-box family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (FBL10) (TAIR:AT2G17020.1); Has 4433 Blast hits to 2197 proteins in 167 species: Archae - 0; Bacteria - 310; Metazoa - 2293; Fungi - 371; Plants - 930; Viruses - 3; Other Eukaryotes - 526 (source: NCBI BLink).  protein_id AT1G55590.1p  transcript_id AT1G55590.1  protein_id AT1G55590.1p  transcript_id AT1G55590.1  
At1g55591	chr1:020772218	0.0	W/20772218-20772302	AT1G55591.1  miRNA  gene_syn MICRORNA158B, MIR158B  gene MIR158B  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCCCCAAAUGUAGACAAAGCA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR158B (MICRORNA158B); miRNA  transcript_id AT1G55591.1  
At1g55600	chr1:020775919	0.0	C/20775919-20776293,20775263-20775401,20774864-20775176,20774625-20774777,20774049-20774526	AT1G55600.1  CDS  gene_syn ATWRKY10, F20N2.3, MINI3, MINISEED 3, WRKY DNA-BINDING PROTEIN 10, WRKY10  gene WRKY10  function member of WRKY Transcription Factor; Group I. It has WRKY domain at its N terminal end and zinc-finger like motif.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_process endosperm development|GO:0009960|16293693|IMP  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY10 (WRKY DNA-BINDING PROTEIN 10); transcription factor  note WRKY DNA-BINDING PROTEIN 10 (WRKY10); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, endosperm development; LOCATED IN: nucleus; EXPRESSED IN: fruit, male gametophyte, free nuclear endosperm; EXPRESSED DURING: C globular stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY2; transcription factor (TAIR:AT5G56270.1); Has 12995 Blast hits to 6906 proteins in 452 species: Archae - 6; Bacteria - 1532; Metazoa - 3844; Fungi - 1268; Plants - 2420; Viruses - 271; Other Eukaryotes - 3654 (source: NCBI BLink).  protein_id AT1G55600.1p  transcript_id AT1G55600.1  protein_id AT1G55600.1p  transcript_id AT1G55600.1  
At1g55604	chr1:020777727	0.0	W/20777727-20778130	AT1G55604.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G26762  
At1g55610	chr1:020779874	0.0	C/20779874-20783374	AT1G55610.1  CDS  gene_syn BRI 1 LIKE, BRL1, F20N2.4  gene BRL1  function mutant has Altered vascular cell differentiation; LRR Receptor Kinase  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product BRL1 (BRI 1 LIKE); kinase  note BRI 1 LIKE (BRL1); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: BRL3 (BRI1-LIKE 3); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase (TAIR:AT3G13380.1); Has 143986 Blast hits to 98520 proteins in 3297 species: Archae - 93; Bacteria - 11041; Metazoa - 57439; Fungi - 7139; Plants - 48569; Viruses - 353; Other Eukaryotes - 19352 (source: NCBI BLink).  protein_id AT1G55610.1p  transcript_id AT1G55610.1  protein_id AT1G55610.1p  transcript_id AT1G55610.1  
At1g55610	chr1:020779874	0.0	C/20779874-20783374	AT1G55610.2  CDS  gene_syn BRI 1 LIKE, BRL1, F20N2.4  gene BRL1  function mutant has Altered vascular cell differentiation; LRR Receptor Kinase  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product BRL1 (BRI 1 LIKE); kinase  note BRI 1 LIKE (BRL1); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: BRL3 (BRI1-LIKE 3); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase (TAIR:AT3G13380.1); Has 143986 Blast hits to 98520 proteins in 3297 species: Archae - 93; Bacteria - 11041; Metazoa - 57439; Fungi - 7139; Plants - 48569; Viruses - 353; Other Eukaryotes - 19352 (source: NCBI BLink).  protein_id AT1G55610.2p  transcript_id AT1G55610.2  protein_id AT1G55610.2p  transcript_id AT1G55610.2  
At1g55615	chr1:020785574	0.0	C/20785574-20785771	AT1G55615.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G55615.1p  transcript_id AT1G55615.1  protein_id AT1G55615.1p  transcript_id AT1G55615.1  
At1g55620	chr1:020790043	0.0	C/20790043-20790313,20789444-20789638,20788772-20789226,20788541-20788645,20787814-20788239,20787503-20787735,20787338-20787410	AT1G55620.1  CDS  gene_syn ATCLC-F, CHLORIDE CHANNEL F, CLC-F, CLCF, F20N2.5  gene CLC-F  function Encodes a chloride channel protein that has been localized to the chloroplast and golgi apparatus. Complements yeast gef1 mutant and therefor may function to acidify the golgi lumen.  go_process chloride transport|GO:0006821||IEA  go_function ion channel activity|GO:0005216||IEA  go_function voltage-gated chloride channel activity|GO:0005247||IEA  go_component Golgi apparatus|GO:0005794|17872921|IDA  go_component chloroplast|GO:0009507|16115625|IDA  go_component membrane|GO:0016020||ISS  go_process chloride transport|GO:0006821||ISS  go_function voltage-gated chloride channel activity|GO:0005247||ISS  product CLC-F (CHLORIDE CHANNEL F); ion channel/ voltage-gated chloride channel  note CHLORIDE CHANNEL F (CLC-F); FUNCTIONS IN: ion channel activity, voltage-gated chloride channel activity; INVOLVED IN: chloride transport; LOCATED IN: Golgi apparatus, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chloride channel, core (InterPro:IPR014743), Chloride channel, voltage gated (InterPro:IPR001807), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CLC-E (CHLORIDE CHANNEL E); ion channel/ voltage-gated chloride channel (TAIR:AT4G35440.1); Has 5417 Blast hits to 5242 proteins in 1089 species: Archae - 151; Bacteria - 3353; Metazoa - 726; Fungi - 239; Plants - 127; Viruses - 0; Other Eukaryotes - 821 (source: NCBI BLink).  protein_id AT1G55620.1p  transcript_id AT1G55620.1  protein_id AT1G55620.1p  transcript_id AT1G55620.1  
At1g55620	chr1:020790535	0.0	C/20790535-20790990,20790043-20790445,20789444-20789638,20788772-20789226,20788541-20788645,20787814-20788239,20787503-20787735,20787338-20787410	AT1G55620.2  CDS  gene_syn ATCLC-F, CHLORIDE CHANNEL F, CLC-F, CLCF, F20N2.5  gene CLC-F  function Encodes a chloride channel protein that has been localized to the chloroplast and golgi apparatus. Complements yeast gef1 mutant and therefor may function to acidify the golgi lumen.  go_process chloride transport|GO:0006821||IEA  go_function ion channel activity|GO:0005216||IEA  go_function voltage-gated chloride channel activity|GO:0005247||IEA  go_component Golgi apparatus|GO:0005794|17872921|IDA  go_component chloroplast|GO:0009507|16115625|IDA  go_component membrane|GO:0016020||ISS  go_process chloride transport|GO:0006821||ISS  go_function voltage-gated chloride channel activity|GO:0005247||ISS  product CLC-F (CHLORIDE CHANNEL F); ion channel/ voltage-gated chloride channel  note CHLORIDE CHANNEL F (CLC-F); FUNCTIONS IN: ion channel activity, voltage-gated chloride channel activity; INVOLVED IN: chloride transport; LOCATED IN: Golgi apparatus, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chloride channel, core (InterPro:IPR014743), Chloride channel, voltage gated (InterPro:IPR001807), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CLC-E (CHLORIDE CHANNEL E); ion channel/ voltage-gated chloride channel (TAIR:AT4G35440.1); Has 5392 Blast hits to 5314 proteins in 1111 species: Archae - 149; Bacteria - 3302; Metazoa - 728; Fungi - 241; Plants - 129; Viruses - 0; Other Eukaryotes - 843 (source: NCBI BLink).  protein_id AT1G55620.2p  transcript_id AT1G55620.2  protein_id AT1G55620.2p  transcript_id AT1G55620.2  
At1g55625	chr1:020791311	0.0	W/20791311-20791392	AT1G55625.1  tRNA  gene_syn 50963.TRNA-SER-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: TGA)  transcript_id AT1G55625.1  
At1g55630	chr1:020791817	0.0	C/20791817-20793250	AT1G55630.1  CDS  gene_syn F20N2.6  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G60050.1); Has 18827 Blast hits to 5565 proteins in 174 species: Archae - 4; Bacteria - 21; Metazoa - 383; Fungi - 322; Plants - 17397; Viruses - 0; Other Eukaryotes - 700 (source: NCBI BLink).  protein_id AT1G55630.1p  transcript_id AT1G55630.1  protein_id AT1G55630.1p  transcript_id AT1G55630.1  
At1g55640	chr1:020793771	0.0	W/20793771-20794334	AT1G55640.1  CDS  gene_syn F20N2.7, PRA1.G1, PRENYLATED RAB ACCEPTOR 1.G1  gene PRA1.G1  go_component endoplasmic reticulum|GO:0005783|18583532|IDA  go_process vesicle-mediated transport|GO:0016192|18583532|IDA  go_function molecular_function|GO:0003674||ND  product PRA1.G1 (PRENYLATED RAB ACCEPTOR 1.G1)  note PRENYLATED RAB ACCEPTOR 1.G1 (PRA1.G1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: PRA1.G2 (PRENYLATED RAB ACCEPTOR 1.G2) (TAIR:AT5G56230.1); Has 233 Blast hits to 233 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 14; Plants - 178; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G55640.1p  transcript_id AT1G55640.1  protein_id AT1G55640.1p  transcript_id AT1G55640.1  
At1g55650	chr1:020796340	0.0	W/20796340-20796506,20797222-20797300,20797399-20797561,20797648-20797695,20797820-20798145,20798251-20798481	AT1G55650.1  CDS  gene_syn F20N2.8  go_component chloroplast|GO:0009507|15028209|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  product high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein  note high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein; FUNCTIONS IN: transcription factor activity; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910), AT-rich interaction region (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein (TAIR:AT3G13350.1); Has 1266 Blast hits to 1257 proteins in 172 species: Archae - 0; Bacteria - 0; Metazoa - 975; Fungi - 96; Plants - 83; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).  protein_id AT1G55650.1p  transcript_id AT1G55650.1  protein_id AT1G55650.1p  transcript_id AT1G55650.1  
At1g55660	chr1:020800694	0.0	W/20800694-20801743,20801831-20801971,20802053-20802340	AT1G55660.1  CDS  gene_syn F20N2.9  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G00315.1); Has 1511 Blast hits to 1475 proteins in 27 species: Archae - 0; Bacteria - 2; Metazoa - 60; Fungi - 0; Plants - 1448; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G55660.1p  transcript_id AT1G55660.1  protein_id AT1G55660.1p  transcript_id AT1G55660.1  
At1g55670	chr1:020802874	0.0	C/20802874-20803356	AT1G55670.1  CDS  gene_syn PHOTOSYSTEM I SUBUNIT G, PSAG, PSI-G  gene PSAG  function Encodes subunit G of photosystem I, an 11-kDa membrane protein that plays an important role in electron transport between plastocyanin and PSI and is involved in the stability of the PSI complex. PSI-G subunit is bound to PSI-B and is in contact with Lhca1. The protein inserts into thylakoids by a direct or spontaneous pathway that does not involve the activities of any known chloroplast protein-targeting machinery. PSI-G appears to be directly or indirectly involved in the interaction between Photosystem I and plastocyanin.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component photosystem I|GO:0009522||ISS  go_component chloroplast thylakoid membrane|GO:0009535|16045770|IDA  go_component chloroplast thylakoid membrane|GO:0009535|16478728|IDA  go_component membrane|GO:0016020||ISS  go_component chloroplast photosystem I|GO:0030093|16045770|IDA  go_component chloroplast photosystem I|GO:0030093|16478728|IDA  go_process photosynthetic electron transport in photosystem I|GO:0009773|11707465|IMP  go_process photosynthetic electron transport in photosystem I|GO:0009773|16045770|IMP  go_process photosynthetic NADP+ reduction|GO:0009780|15953472|IMP  go_process photosynthesis|GO:0015979|11707465|IMP  go_process photosynthesis|GO:0015979||ISS  go_process photosystem I stabilization|GO:0042550|15953472|IMP  go_process protein stabilization|GO:0050821|12068106|IMP  go_function molecular_function|GO:0003674||ND  product PSAG (PHOTOSYSTEM I SUBUNIT G)  note PHOTOSYSTEM I SUBUNIT G (PSAG); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein stabilization, photosystem I stabilization, photosynthetic NADP+ reduction, photosynthetic electron transport in photosystem I, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction center, PsaG, plant (InterPro:IPR017494), Photosystem I PsaG/PsaK protein (InterPro:IPR000549), Photosystem I reaction centre, PsaG/PsaK, plant (InterPro:IPR016370); Has 88 Blast hits to 88 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G55670.1p  transcript_id AT1G55670.1  protein_id AT1G55670.1p  transcript_id AT1G55670.1  
At1g55675	chr1:020803854	0.0	C/20803854-20804129	AT1G55675.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G55675.1p  transcript_id AT1G55675.1  protein_id AT1G55675.1p  transcript_id AT1G55675.1  
At1g55680	chr1:020807157	0.0	C/20807157-20807294,20806854-20807021,20806664-20806750,20806333-20806467,20806135-20806245,20805937-20806028,20805750-20805855,20805475-20805561,20804988-20805401	AT1G55680.1  CDS  gene_syn F20N2.10  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product WD-40 repeat family protein  note WD-40 repeat family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein (TAIR:AT3G13340.1); Has 14759 Blast hits to 7103 proteins in 369 species: Archae - 68; Bacteria - 4509; Metazoa - 4132; Fungi - 2799; Plants - 903; Viruses - 0; Other Eukaryotes - 2348 (source: NCBI BLink).  protein_id AT1G55680.1p  transcript_id AT1G55680.1  protein_id AT1G55680.1p  transcript_id AT1G55680.1  
At1g55690	chr1:020811825	0.0	C/20811825-20811831,20811440-20811743,20811232-20811331,20810792-20811058,20810594-20810671,20810407-20810511,20810284-20810333,20810092-20810194,20809860-20809958,20809661-20809774,20809425-20809584,20808883-20809274,20808712-20808798	AT1G55690.3  CDS  gene_syn F20N2.11  go_component cellular_component|GO:0005575||ND  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  note SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: transporter (TAIR:AT5G56160.1); Has 1440 Blast hits to 1438 proteins in 175 species: Archae - 0; Bacteria - 0; Metazoa - 476; Fungi - 302; Plants - 418; Viruses - 0; Other Eukaryotes - 244 (source: NCBI BLink).  protein_id AT1G55690.3p  transcript_id AT1G55690.3  protein_id AT1G55690.3p  transcript_id AT1G55690.3  
At1g55690	chr1:020811825	0.0	C/20811825-20811831,20811440-20811743,20811232-20811331,20810792-20811058,20810594-20810671,20810407-20810511,20810284-20810333,20810092-20810194,20809860-20809958,20809661-20809774,20809425-20809584,20808883-20809274,20808724-20808798,20808622-20808645	AT1G55690.1  CDS  gene_syn F20N2.11  go_component cellular_component|GO:0005575||ND  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  note SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: transporter (TAIR:AT5G56160.1); Has 1450 Blast hits to 1439 proteins in 175 species: Archae - 0; Bacteria - 0; Metazoa - 476; Fungi - 302; Plants - 428; Viruses - 0; Other Eukaryotes - 244 (source: NCBI BLink).  protein_id AT1G55690.1p  transcript_id AT1G55690.1  protein_id AT1G55690.1p  transcript_id AT1G55690.1  
At1g55690	chr1:020811825	0.0	C/20811825-20811831,20811440-20811743,20811232-20811331,20810792-20811058,20810594-20810671,20810407-20810511,20810284-20810333,20810092-20810194,20809860-20809958,20809661-20809774,20809425-20809584,20808883-20809274,20808724-20808798,20808622-20808645	AT1G55690.2  CDS  gene_syn F20N2.11  go_component cellular_component|GO:0005575||ND  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  note SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: transporter (TAIR:AT5G56160.1); Has 1450 Blast hits to 1439 proteins in 175 species: Archae - 0; Bacteria - 0; Metazoa - 476; Fungi - 302; Plants - 428; Viruses - 0; Other Eukaryotes - 244 (source: NCBI BLink).  protein_id AT1G55690.2p  transcript_id AT1G55690.2  protein_id AT1G55690.2p  transcript_id AT1G55690.2  
At1g55700	chr1:020821601	0.0	W/20821601-20823640	AT1G55700.1  CDS  gene_syn F20N2.12  go_component intracellular|GO:0005622||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, C2H2-type (InterPro:IPR007087), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT1G55380.1); Has 1267 Blast hits to 533 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 77; Fungi - 0; Plants - 1181; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G55700.1p  transcript_id AT1G55700.1  protein_id AT1G55700.1p  transcript_id AT1G55700.1  
At1g55710	chr1:020825924	0.0	C/20825924-20826142	AT1G55710.1  CDS  gene_syn F20N2.31, F20N2_31  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53342.1); Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G55710.1p  transcript_id AT1G55710.1  protein_id AT1G55710.1p  transcript_id AT1G55710.1  
At1g55720	chr1:020830506	0.0	C/20830506-20830595,20830189-20830422,20830032-20830099,20829930-20829958,20829657-20829853,20829372-20829575,20829116-20829250,20828910-20829026,20828779-20828832,20828579-20828698,20828370-20828463,20828118-20828179	AT1G55720.1  CDS  gene_syn ATCAX6, CATION EXCHANGER 6, CAX6, F20N2.13  gene ATCAX6  function member of Low affinity calcium antiporter CAX2 family  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812||IEA  go_process cation transport|GO:0006812||ISS  go_function calcium:cation antiporter activity|GO:0015368||ISS  go_function cation:cation antiporter activity|GO:0015491|11500563|NAS  go_function cation:cation antiporter activity|GO:0015491||ISS  product ATCAX6; calcium:cation antiporter/ cation:cation antiporter  note ATCAX6; FUNCTIONS IN: cation:cation antiporter activity, calcium:cation antiporter activity; INVOLVED IN: cation transport; LOCATED IN: endomembrane system, integral to membrane; CONTAINS InterPro DOMAIN/s: Sodium/calcium exchanger membrane region (InterPro:IPR004837), Calcium/proton exchanger superfamily (InterPro:IPR004798), Calcium/proton exchanger (InterPro:IPR004713); BEST Arabidopsis thaliana protein match is: ATCAX5; calcium:cation antiporter/ cation:cation antiporter (TAIR:AT1G55730.2); Has 1857 Blast hits to 1743 proteins in 520 species: Archae - 30; Bacteria - 932; Metazoa - 16; Fungi - 476; Plants - 149; Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink).  protein_id AT1G55720.1p  transcript_id AT1G55720.1  protein_id AT1G55720.1p  transcript_id AT1G55720.1  
At1g55730	chr1:020833897	0.0	C/20833897-20833941,20833563-20833808,20833408-20833475,20833285-20833313,20832997-20833193,20832682-20832894,20832279-20832413,20831997-20832113,20831865-20831918,20831668-20831784,20831483-20831576,20831387-20831397	AT1G55730.1  CDS  gene_syn ATCAX5, CATION EXCHANGER 5, CAX5, F20N2.30, F20N2_30  gene ATCAX5  function member of Low affinity calcium antiporter CAX2 family  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812||IEA  go_process cation transport|GO:0006812||ISS  go_function calcium:cation antiporter activity|GO:0015368||ISS  go_function cation:cation antiporter activity|GO:0015491|11500563|NAS  go_function cation:cation antiporter activity|GO:0015491||ISS  product ATCAX5; calcium:cation antiporter/ cation:cation antiporter  note ATCAX5; FUNCTIONS IN: cation:cation antiporter activity, calcium:cation antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Sodium/calcium exchanger membrane region (InterPro:IPR004837), Calcium/proton exchanger superfamily (InterPro:IPR004798), Calcium/proton exchanger (InterPro:IPR004713); BEST Arabidopsis thaliana protein match is: CAX2 (CATION EXCHANGER 2); calcium:cation antiporter/ calcium:hydrogen antiporter (TAIR:AT3G13320.1); Has 1983 Blast hits to 1864 proteins in 556 species: Archae - 28; Bacteria - 1019; Metazoa - 16; Fungi - 481; Plants - 152; Viruses - 0; Other Eukaryotes - 287 (source: NCBI BLink).  protein_id AT1G55730.1p  transcript_id AT1G55730.1  protein_id AT1G55730.1p  transcript_id AT1G55730.1  
At1g55730	chr1:020833897	0.0	C/20833897-20833941,20833563-20833808,20833408-20833475,20833285-20833313,20832997-20833193,20832682-20832894,20832279-20832413,20831997-20832113,20831865-20831918,20831668-20831784,20831483-20831576,20831387-20831397	AT1G55730.2  CDS  gene_syn ATCAX5, CATION EXCHANGER 5, CAX5, F20N2.30, F20N2_30  gene ATCAX5  function member of Low affinity calcium antiporter CAX2 family  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812||IEA  go_process cation transport|GO:0006812||ISS  go_function calcium:cation antiporter activity|GO:0015368||ISS  go_function cation:cation antiporter activity|GO:0015491|11500563|NAS  go_function cation:cation antiporter activity|GO:0015491||ISS  product ATCAX5; calcium:cation antiporter/ cation:cation antiporter  note ATCAX5; FUNCTIONS IN: cation:cation antiporter activity, calcium:cation antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Sodium/calcium exchanger membrane region (InterPro:IPR004837), Calcium/proton exchanger superfamily (InterPro:IPR004798), Calcium/proton exchanger (InterPro:IPR004713); BEST Arabidopsis thaliana protein match is: CAX2 (CATION EXCHANGER 2); calcium:cation antiporter/ calcium:hydrogen antiporter (TAIR:AT3G13320.1); Has 1983 Blast hits to 1864 proteins in 556 species: Archae - 28; Bacteria - 1019; Metazoa - 16; Fungi - 481; Plants - 152; Viruses - 0; Other Eukaryotes - 287 (source: NCBI BLink).  protein_id AT1G55730.2p  transcript_id AT1G55730.2  protein_id AT1G55730.2p  transcript_id AT1G55730.2  
At1g55740	chr1:020838517	0.0	C/20838517-20838707,20838169-20838413,20837993-20838083,20837853-20837901,20837670-20837761,20837487-20837594,20836855-20837400,20836622-20836763,20836488-20836555,20836257-20836391,20835966-20836183,20835507-20835886	AT1G55740.1  CDS  gene_syn Arabidopsis thaliana seed imbibition 1, AtSIP1, F20N2.14  gene AtSIP1  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product AtSIP1 (Arabidopsis thaliana seed imbibition 1); hydrolase, hydrolyzing O-glycosyl compounds  note Arabidopsis thaliana seed imbibition 1 (AtSIP1); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, sepal, root, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Raffinose synthase (InterPro:IPR008811); BEST Arabidopsis thaliana protein match is: AtSIP2 (Arabidopsis thaliana seed imbibition 2); hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT3G57520.1); Has 290 Blast hits to 268 proteins in 85 species: Archae - 9; Bacteria - 46; Metazoa - 0; Fungi - 51; Plants - 178; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G55740.1p  transcript_id AT1G55740.1  protein_id AT1G55740.1p  transcript_id AT1G55740.1  
At1g55750	chr1:020845055	0.0	C/20845055-20845135,20844890-20844968,20844699-20844760,20844528-20844591,20844314-20844428,20844144-20844219,20843969-20844064,20843708-20843752,20843303-20843359,20843048-20843203,20842885-20842950,20842260-20842383,20842054-20842110,20841842-20841969,20841584-20841757,20841376-20841489,20841184-20841261,20840975-20841022,20840696-20840764,20840449-20840535	AT1G55750.1  CDS  gene_syn F20N2.28, F20N2_28  go_component cellular_component|GO:0005575||ND  product transcription factor-related  note transcription factor-related; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Kelch related (InterPro:IPR013089), BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61420.1); Has 254 Blast hits to 252 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 124; Fungi - 86; Plants - 26; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G55750.1p  transcript_id AT1G55750.1  protein_id AT1G55750.1p  transcript_id AT1G55750.1  
At1g55760	chr1:020848389	0.0	C/20848389-20848507,20848099-20848247,20847864-20847982,20847117-20847719	AT1G55760.1  CDS  gene_syn F20N2.15  go_function protein binding|GO:0005515||IEA  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product BTB/POZ domain-containing protein  note BTB/POZ domain-containing protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT1G21780.2); Has 4604 Blast hits to 4570 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 3755; Fungi - 14; Plants - 663; Viruses - 17; Other Eukaryotes - 155 (source: NCBI BLink).  protein_id AT1G55760.1p  transcript_id AT1G55760.1  protein_id AT1G55760.1p  transcript_id AT1G55760.1  
At1g55770	chr1:020851039	0.0	C/20851039-20851566	AT1G55770.1  CDS  gene_syn F20N2.16  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT4G02250.1); Has 179 Blast hits to 179 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 179; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G55770.1p  transcript_id AT1G55770.1  protein_id AT1G55770.1p  transcript_id AT1G55770.1  
At1g55780	chr1:020853275	0.0	C/20853275-20853310,20853120-20853198,20852685-20853025	AT1G55780.1  CDS  gene_syn F20N2.22  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product metal ion binding  note metal ion binding; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); Has 95 Blast hits to 95 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G55780.1p  transcript_id AT1G55780.1  protein_id AT1G55780.1p  transcript_id AT1G55780.1  
At1g55790	chr1:020855883	0.0	C/20855883-20856069,20855392-20855590,20854854-20855263,20854697-20854819,20854321-20854481,20854123-20854170,20853792-20853908	AT1G55790.1  CDS  gene_syn F20N2.17  go_component cytoplasm|GO:0005737||IEA  go_process translation|GO:0006412||IEA  go_process phenylalanyl-tRNA aminoacylation|GO:0006432||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function phenylalanine-tRNA ligase activity|GO:0004826||IEA  go_function ATP binding|GO:0005524||IEA  product ATP binding / nucleotide binding / phenylalanine-tRNA ligase  note ATP binding / nucleotide binding / phenylalanine-tRNA ligase; FUNCTIONS IN: phenylalanine-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: phenylalanyl-tRNA aminoacylation, translation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Phenylalanyl-tRNA synthetase, class IIc, conserved region (InterPro:IPR002319); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55800.1); Has 218 Blast hits to 214 proteins in 91 species: Archae - 0; Bacteria - 16; Metazoa - 48; Fungi - 63; Plants - 70; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G55790.1p  transcript_id AT1G55790.1  protein_id AT1G55790.1p  transcript_id AT1G55790.1  
At1g55800	chr1:020858055	0.0	C/20858055-20858235,20857627-20857906,20857493-20857571,20857094-20857405,20856922-20857014	AT1G55800.1  CDS  gene_syn F20N2.18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ATP binding / nucleotide binding / phenylalanine-tRNA ligase (TAIR:AT1G55790.1); Has 134 Blast hits to 131 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 34; Fungi - 27; Plants - 66; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G55800.1p  transcript_id AT1G55800.1  protein_id AT1G55800.1p  transcript_id AT1G55800.1  
At1g55805	chr1:020858956	0.0	C/20858956-20859438	AT1G55805.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function transcription regulator activity|GO:0030528||ISS  product BolA-like family protein  note BolA-like family protein; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BolA-like protein (InterPro:IPR002634); BEST Arabidopsis thaliana protein match is: CPSUFE (CHLOROPLAST SULFUR E); enzyme activator/ transcription regulator (TAIR:AT4G26500.1); Has 2744 Blast hits to 2744 proteins in 711 species: Archae - 12; Bacteria - 1344; Metazoa - 146; Fungi - 93; Plants - 79; Viruses - 0; Other Eukaryotes - 1070 (source: NCBI BLink).  protein_id AT1G55805.1p  transcript_id AT1G55805.1  protein_id AT1G55805.1p  transcript_id AT1G55805.1  
At1g55810	chr1:020861273	0.0	W/20861273-20861414,20861492-20861583,20861685-20861754,20861867-20861985,20862198-20862294,20862428-20862507,20862584-20862778,20862871-20862954,20863028-20863088,20863196-20863256,20863326-20863419,20863486-20863558,20863652-20863734,20863854-20864003	AT1G55810.1  CDS  gene_syn F20N2.21, F20N2_21  go_process metabolic process|GO:0008152||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||IEA  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_component cellular_component|GO:0005575||ND  go_process biosynthetic process|GO:0009058||ISS  go_function uracil phosphoribosyltransferase activity|GO:0004845||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative  note uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative; FUNCTIONS IN: uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding; INVOLVED IN: biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083), Uridine kinase (InterPro:IPR000764); BEST Arabidopsis thaliana protein match is: ATP binding / kinase/ phosphotransferase, alcohol group as acceptor / uracil phosphoribosyltransferase (TAIR:AT4G26510.2); Has 7381 Blast hits to 7369 proteins in 1428 species: Archae - 126; Bacteria - 4965; Metazoa - 464; Fungi - 348; Plants - 370; Viruses - 2; Other Eukaryotes - 1106 (source: NCBI BLink).  protein_id AT1G55810.1p  transcript_id AT1G55810.1  protein_id AT1G55810.1p  transcript_id AT1G55810.1  
At1g55810	chr1:020861273	0.0	W/20861273-20861414,20861492-20861583,20861685-20861754,20861867-20861985,20862198-20862294,20862428-20862507,20862584-20862778,20862871-20862954,20863028-20863088,20863196-20863256,20863326-20863419,20863486-20863558,20863652-20863734,20863854-20864003	AT1G55810.3  CDS  gene_syn F20N2.21, F20N2_21  go_process metabolic process|GO:0008152||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||IEA  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_component cellular_component|GO:0005575||ND  go_process biosynthetic process|GO:0009058||ISS  go_function uracil phosphoribosyltransferase activity|GO:0004845||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative  note uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative; FUNCTIONS IN: uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding; INVOLVED IN: biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083), Uridine kinase (InterPro:IPR000764); BEST Arabidopsis thaliana protein match is: ATP binding / kinase/ phosphotransferase, alcohol group as acceptor / uracil phosphoribosyltransferase (TAIR:AT4G26510.2); Has 7381 Blast hits to 7369 proteins in 1428 species: Archae - 126; Bacteria - 4965; Metazoa - 464; Fungi - 348; Plants - 370; Viruses - 2; Other Eukaryotes - 1106 (source: NCBI BLink).  protein_id AT1G55810.3p  transcript_id AT1G55810.3  protein_id AT1G55810.3p  transcript_id AT1G55810.3  
At1g55810	chr1:020861273	0.0	W/20861273-20861414,20861492-20861583,20861685-20861754,20861867-20861985,20862198-20862294,20862428-20862507,20862584-20862778,20862871-20862954,20863028-20863088,20863196-20863256,20863326-20863419,20863501-20863558,20863652-20863734,20863854-20864003	AT1G55810.2  CDS  gene_syn F20N2.21, F20N2_21  go_process metabolic process|GO:0008152||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||IEA  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_component cellular_component|GO:0005575||ND  go_process biosynthetic process|GO:0009058||ISS  go_function uracil phosphoribosyltransferase activity|GO:0004845||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative  note uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative; FUNCTIONS IN: uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding; INVOLVED IN: biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083), Uridine kinase (InterPro:IPR000764); BEST Arabidopsis thaliana protein match is: ATP binding / kinase/ phosphotransferase, alcohol group as acceptor / uracil phosphoribosyltransferase (TAIR:AT4G26510.2); Has 7366 Blast hits to 7354 proteins in 1428 species: Archae - 126; Bacteria - 4965; Metazoa - 464; Fungi - 348; Plants - 368; Viruses - 2; Other Eukaryotes - 1093 (source: NCBI BLink).  protein_id AT1G55810.2p  transcript_id AT1G55810.2  protein_id AT1G55810.2p  transcript_id AT1G55810.2  
At1g55820	chr1:020864397	0.0	W/20864397-20864571,20865103-20865146,20865244-20865316,20865405-20865525,20865624-20865727,20865826-20866114,20866315-20866564,20866658-20867035,20867125-20867418	AT1G55820.1  CDS  gene_syn F20N2.19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1296 (InterPro:IPR009719); BEST Arabidopsis thaliana protein match is: GIP1 (GBF-INTERACTING PROTEIN 1); unfolded protein binding (TAIR:AT3G13222.1); Has 1009 Blast hits to 462 proteins in 111 species: Archae - 0; Bacteria - 42; Metazoa - 245; Fungi - 90; Plants - 135; Viruses - 12; Other Eukaryotes - 485 (source: NCBI BLink).  protein_id AT1G55820.1p  transcript_id AT1G55820.1  protein_id AT1G55820.1p  transcript_id AT1G55820.1  
At1g55830	chr1:020869285	0.0	C/20869285-20869698,20868906-20869129,20868633-20868779,20868287-20868511,20867918-20868146	AT1G55830.1  CDS  gene_syn F20N2.20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF812 (InterPro:IPR008530); Has 9160 Blast hits to 5892 proteins in 448 species: Archae - 147; Bacteria - 476; Metazoa - 5323; Fungi - 583; Plants - 208; Viruses - 19; Other Eukaryotes - 2404 (source: NCBI BLink).  protein_id AT1G55830.1p  transcript_id AT1G55830.1  protein_id AT1G55830.1p  transcript_id AT1G55830.1  
At1g55840	chr1:020873891	0.0	W/20873891-20873945,20874058-20874086,20874483-20874566,20874671-20874724,20874807-20874884,20874987-20875040,20875125-20875184,20875270-20875365,20875462-20875644,20875734-20876018	AT1G55840.1  CDS  gene_syn F14J16.8, F14J16_8  go_component cellular_component|GO:0005575||ND  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein  note SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putative (TAIR:AT5G47730.1); Has 1377 Blast hits to 1376 proteins in 165 species: Archae - 0; Bacteria - 0; Metazoa - 557; Fungi - 269; Plants - 406; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink).  protein_id AT1G55840.1p  transcript_id AT1G55840.1  protein_id AT1G55840.1p  transcript_id AT1G55840.1  
At1g55840	chr1:020873943	0.0	W/20873943-20873945,20874483-20874566,20874671-20874724,20874807-20874884,20874987-20875040,20875125-20875184,20875270-20875365,20875462-20875644,20875734-20876018	AT1G55840.2  CDS  gene_syn F14J16.8, F14J16_8  go_component cellular_component|GO:0005575||ND  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein  note SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putative (TAIR:AT5G47730.1); Has 1346 Blast hits to 1346 proteins in 165 species: Archae - 0; Bacteria - 0; Metazoa - 528; Fungi - 271; Plants - 406; Viruses - 0; Other Eukaryotes - 141 (source: NCBI BLink).  protein_id AT1G55840.2p  transcript_id AT1G55840.2  protein_id AT1G55840.2p  transcript_id AT1G55840.2  
At1g55850	chr1:020876752	0.0	W/20876752-20877510,20877603-20877719,20877789-20878001,20878124-20878330,20878438-20878785,20878869-20879414	AT1G55850.1  CDS  gene_syn ATCSLE1, CELLULOSE SYNTHASE LIKE E1, CSLE1, F14J16.9, F14J16_9  gene ATCSLE1  function encodes a protein similar to cellulose synthase  go_component plasma membrane|GO:0005886|17317660|IDA  go_process cellulose biosynthetic process|GO:0030244||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process polysaccharide biosynthetic process|GO:0000271||ISS  go_process plant-type cell wall biogenesis|GO:0009832||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  product ATCSLE1; cellulose synthase/ transferase, transferring glycosyl groups  note ATCSLE1; FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: plant-type cell wall biogenesis, cellulose biosynthetic process, polysaccharide biosynthetic process; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: ATCSLG2; cellulose synthase/ transferase/ transferase, transferring glycosyl groups (TAIR:AT4G24000.1); Has 1750 Blast hits to 1365 proteins in 226 species: Archae - 2; Bacteria - 264; Metazoa - 5; Fungi - 10; Plants - 1438; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT1G55850.1p  transcript_id AT1G55850.1  protein_id AT1G55850.1p  transcript_id AT1G55850.1  
At1g55860	chr1:020895294	0.0	C/20895294-20895393,20894669-20894736,20893943-20894554,20892323-20892418,20892024-20892230,20888054-20891815,20884055-20887936,20883658-20883978,20883301-20883502,20882973-20883217,20882615-20882883,20881337-20882444,20881108-20881254,20880920-20881000,20880601-20880826,20880382-20880521,20880083-20880189,20879900-20880002	AT1G55860.1  CDS  gene_syn F14J16.37, UBIQUITIN-PROTEIN LIGASE 1, UPL1  gene UPL1  function encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.  go_component membrane|GO:0016020|17432890|IDA  go_component ubiquitin ligase complex|GO:0000151|10571878|ISS  go_component ubiquitin ligase complex|GO:0000151|11019805|TAS  go_component mitochondrion|GO:0005739|14671022|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process protein ubiquitination|GO:0016567|10571878|ISS  go_function ubiquitin-protein ligase activity|GO:0004842|10571878|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|10571878|IMP  go_function ubiquitin-protein ligase activity|GO:0004842|10571878|ISS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UPL1 (UBIQUITIN-PROTEIN LIGASE 1); ubiquitin-protein ligase  note UBIQUITIN-PROTEIN LIGASE 1 (UPL1); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process, protein ubiquitination; LOCATED IN: cytosol, mitochondrion, ubiquitin ligase complex, membrane; EXPRESSED IN: guard cell, cultured cell, trichome, leaf; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), E3 ubiquitin ligase, region of unknown function DUF913 (InterPro:IPR010314), E3 ubiquitin ligase, region of unknown function DUF908 (InterPro:IPR010309), Ubiquitin interacting motif (InterPro:IPR003903), HECT (InterPro:IPR000569), Armadillo-type fold (InterPro:IPR016024), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: UPL2 (UBIQUITIN-PROTEIN LIGASE 2); ubiquitin-protein ligase (TAIR:AT1G70320.1); Has 7559 Blast hits to 5977 proteins in 319 species: Archae - 6; Bacteria - 353; Metazoa - 3690; Fungi - 1199; Plants - 376; Viruses - 71; Other Eukaryotes - 1864 (source: NCBI BLink).  protein_id AT1G55860.1p  transcript_id AT1G55860.1  protein_id AT1G55860.1p  transcript_id AT1G55860.1  
At1g55870	chr1:020895663	0.0	W/20895663-20896030,20896105-20896235,20896344-20896663,20896739-20896852,20897053-20897179,20897268-20897538,20897621-20898359	AT1G55870.1  CDS  gene_syn ABA-HYPERSENSITIVE GERMINATION 2, AHG2, ARABIDOPSIS THALIANA POLY(A) RIBONUCLEASE, ATPARN, F14J16.11, F14J16_11  gene AHG2  function Encodes a poly(A)-specific ribonuclease, AtPARN. Expression of AtPARN is upregulated by ABA or stress treatment. Mutant is hypersensitivity to salicylic acid as well as ABA.  go_component nucleus|GO:0005634||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process response to stress|GO:0006950|16359390|IMP  go_process RNA modification|GO:0009451||ISS  go_process response to abscisic acid stimulus|GO:0009737|16359390|IMP  go_process response to salicylic acid stimulus|GO:0009751|16359390|IMP  go_function ribonuclease activity|GO:0004540||ISS  product AHG2 (ABA-HYPERSENSITIVE GERMINATION 2); nucleic acid binding / ribonuclease  note ABA-HYPERSENSITIVE GERMINATION 2 (AHG2); FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: response to abscisic acid stimulus, RNA modification, response to salicylic acid stimulus, response to stress; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: CAF1 family ribonuclease (TAIR:AT3G25430.1); Has 329 Blast hits to 320 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 189; Fungi - 41; Plants - 31; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT1G55870.1p  transcript_id AT1G55870.1  protein_id AT1G55870.1p  transcript_id AT1G55870.1  
At1g55870	chr1:020896184	0.0	W/20896184-20896235,20896344-20896663,20896739-20896852,20897053-20897179,20897268-20897538,20897621-20898359	AT1G55870.2  CDS  gene_syn ABA-HYPERSENSITIVE GERMINATION 2, AHG2, ARABIDOPSIS THALIANA POLY(A) RIBONUCLEASE, ATPARN, F14J16.11, F14J16_11  gene AHG2  function Encodes a poly(A)-specific ribonuclease, AtPARN. Expression of AtPARN is upregulated by ABA or stress treatment. Mutant is hypersensitivity to salicylic acid as well as ABA.  go_component nucleus|GO:0005634||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process response to stress|GO:0006950|16359390|IMP  go_process RNA modification|GO:0009451||ISS  go_process response to abscisic acid stimulus|GO:0009737|16359390|IMP  go_process response to salicylic acid stimulus|GO:0009751|16359390|IMP  go_function ribonuclease activity|GO:0004540||ISS  product AHG2 (ABA-HYPERSENSITIVE GERMINATION 2); nucleic acid binding / ribonuclease  note ABA-HYPERSENSITIVE GERMINATION 2 (AHG2); FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: response to abscisic acid stimulus, RNA modification, response to salicylic acid stimulus, response to stress; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: CAF1 family ribonuclease (TAIR:AT3G25430.1); Has 243 Blast hits to 243 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 116; Fungi - 39; Plants - 27; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT1G55870.2p  transcript_id AT1G55870.2  protein_id AT1G55870.2p  transcript_id AT1G55870.2  
At1g55880	chr1:020900943	0.0	C/20900943-20901140,20900759-20900833,20900448-20900591,20899963-20900352,20899619-20899858	AT1G55880.2  CDS  gene_syn F14J16.13, F14J16_13  go_process cysteine biosynthetic process from serine|GO:0006535||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_process amino acid metabolic process|GO:0006520||ISS  go_function lyase activity|GO:0016829||ISS  product pyridoxal-5 -phosphate-dependent enzyme, beta family protein  note pyridoxal-5 -phosphate-dependent enzyme, beta family protein; FUNCTIONS IN: lyase activity, pyridoxal phosphate binding, catalytic activity; INVOLVED IN: amino acid metabolic process, cysteine biosynthetic process from serine, metabolic process; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (InterPro:IPR001216), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926); BEST Arabidopsis thaliana protein match is: cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative (TAIR:AT5G28030.2); Has 10519 Blast hits to 10509 proteins in 1459 species: Archae - 228; Bacteria - 5710; Metazoa - 323; Fungi - 330; Plants - 322; Viruses - 0; Other Eukaryotes - 3606 (source: NCBI BLink).  protein_id AT1G55880.2p  transcript_id AT1G55880.2  protein_id AT1G55880.2p  transcript_id AT1G55880.2  
At1g55880	chr1:020900943	0.0	C/20900943-20901140,20900759-20900833,20900448-20900591,20899963-20900352,20899623-20899858,20899292-20899514	AT1G55880.1  CDS  gene_syn F14J16.13, F14J16_13  go_process cysteine biosynthetic process from serine|GO:0006535||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_process amino acid metabolic process|GO:0006520||ISS  go_function lyase activity|GO:0016829||ISS  product pyridoxal-5 -phosphate-dependent enzyme, beta family protein  note pyridoxal-5 -phosphate-dependent enzyme, beta family protein; FUNCTIONS IN: lyase activity, pyridoxal phosphate binding, catalytic activity; INVOLVED IN: amino acid metabolic process, cysteine biosynthetic process from serine, metabolic process; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (InterPro:IPR001216), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926); BEST Arabidopsis thaliana protein match is: cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative (TAIR:AT5G28030.2); Has 11031 Blast hits to 11019 proteins in 1463 species: Archae - 236; Bacteria - 5849; Metazoa - 328; Fungi - 337; Plants - 322; Viruses - 0; Other Eukaryotes - 3959 (source: NCBI BLink).  protein_id AT1G55880.1p  transcript_id AT1G55880.1  protein_id AT1G55880.1p  transcript_id AT1G55880.1  
At1g55890	chr1:020901364	0.0	W/20901364-20902560	AT1G55890.1  CDS  gene_syn F14J16.14, F14J16_14  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G13160.1); Has 17815 Blast hits to 5592 proteins in 168 species: Archae - 5; Bacteria - 22; Metazoa - 302; Fungi - 235; Plants - 16660; Viruses - 0; Other Eukaryotes - 591 (source: NCBI BLink).  protein_id AT1G55890.1p  transcript_id AT1G55890.1  protein_id AT1G55890.1p  transcript_id AT1G55890.1  
At1g55900	chr1:020903163	0.0	W/20903163-20903472,20903710-20903807,20903987-20904023,20904111-20904172,20904262-20904375,20904544-20904648,20904739-20904837,20904930-20905086,20905182-20905284,20905375-20905420	AT1G55900.1  CDS  gene_syn F14J16.15, F14J16_15, TIM50, emb1860, embryo defective 1860  gene TIM50  function component of a translocase in the mitochondrial inner membrane  go_component mitochondrion|GO:0005739|15276431|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|14730085|IDA  go_component mitochondrial inner membrane|GO:0005743|14730085|IDA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product TIM50  note TIM50; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: mitochondrion, mitochondrial inner membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: NLI interacting factor (NIF) family protein (TAIR:AT1G29780.1); Has 1586 Blast hits to 1586 proteins in 176 species: Archae - 0; Bacteria - 8; Metazoa - 632; Fungi - 274; Plants - 143; Viruses - 0; Other Eukaryotes - 529 (source: NCBI BLink).  protein_id AT1G55900.1p  transcript_id AT1G55900.1  protein_id AT1G55900.1p  transcript_id AT1G55900.1  
At1g55910	chr1:020906161	0.0	W/20906161-20906626,20906711-20907225	AT1G55910.1  CDS  gene_syn F14J16.16, ZINC TRANSPORTER 11 PRECURSOR, ZIP11  gene ZIP11  function member of Putative zinc transporter ZIP2 - like family  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process metal ion transport|GO:0030001||IEA  go_process cation transport|GO:0006812||ISS  go_function cation transmembrane transporter activity|GO:0008324||ISS  go_function metal ion transmembrane transporter activity|GO:0046873||ISS  product ZIP11 (ZINC TRANSPORTER 11 PRECURSOR); cation transmembrane transporter/ metal ion transmembrane transporter  note ZINC TRANSPORTER 11 PRECURSOR (ZIP11); FUNCTIONS IN: cation transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: cation transport, metal ion transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: ZIP2; copper ion transmembrane transporter/ transferase, transferring glycosyl groups / zinc ion transmembrane transporter (TAIR:AT5G59520.1); Has 1323 Blast hits to 1298 proteins in 268 species: Archae - 8; Bacteria - 191; Metazoa - 404; Fungi - 235; Plants - 284; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink).  protein_id AT1G55910.1p  transcript_id AT1G55910.1  protein_id AT1G55910.1p  transcript_id AT1G55910.1  
At1g55915	chr1:020907663	0.0	W/20907663-20907829,20908019-20908214,20908490-20909149,20909238-20909429	AT1G55915.1  CDS  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: WLM (InterPro:IPR013536), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35690.1); Has 367 Blast hits to 331 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 139; Plants - 36; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT1G55915.1p  transcript_id AT1G55915.1  protein_id AT1G55915.1p  transcript_id AT1G55915.1  
At1g55920	chr1:020912378	0.0	W/20912378-20913322	AT1G55920.1  CDS  gene_syn ATSERAT2;1, F14J16.18, F14J16_18, SAT1, SAT5, SERINE ACETYLTRANSFERASE, SERINE ACETYLTRANSFERASE 1, SERINE ACETYLTRANSFERASE 2;1, SERINE ACETYLTRANSFERASE 5  gene ATSERAT2;1  function Encodes a chloroplast/cytosol localized serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system.  go_component nucleus|GO:0005634|14617066|IDA  go_component cytosol|GO:0005829|7851429|TAS  go_component chloroplast|GO:0009507|9830017|IDA  go_process response to cold|GO:0009409|14617066|IEP  go_process cellular response to sulfate starvation|GO:0009970|9380766|IEP  go_function serine O-acetyltransferase activity|GO:0009001|8867790|IDA  go_function serine O-acetyltransferase activity|GO:0009001|8867790|IGI  product ATSERAT2;1 (SERINE ACETYLTRANSFERASE 2;1); serine O-acetyltransferase  note SERINE ACETYLTRANSFERASE 2;1 (ATSERAT2;1); FUNCTIONS IN: serine O-acetyltransferase activity; INVOLVED IN: cellular response to sulfate starvation, response to cold; LOCATED IN: cytosol, chloroplast, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine O-acetyltransferase (InterPro:IPR005881), Hexapeptide transferase, conserved site (InterPro:IPR018357), Trimeric LpxA-like (InterPro:IPR011004), Bacterial transferase hexapeptide repeat (InterPro:IPR001451), Serine acetyltransferase, N-terminal (InterPro:IPR010493); BEST Arabidopsis thaliana protein match is: ATSERAT2;2 (SERINE ACETYLTRANSFERASE 2;2); serine O-acetyltransferase (TAIR:AT3G13110.1); Has 14921 Blast hits to 14896 proteins in 1429 species: Archae - 254; Bacteria - 9385; Metazoa - 4; Fungi - 157; Plants - 163; Viruses - 0; Other Eukaryotes - 4958 (source: NCBI BLink).  protein_id AT1G55920.1p  transcript_id AT1G55920.1  protein_id AT1G55920.1p  transcript_id AT1G55920.1  
At1g55928	chr1:020917471	0.0	W/20917471-20918367	AT1G55928.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2040, coiled-coil (InterPro:IPR018612); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G27285.1); Has 2996 Blast hits to 2069 proteins in 222 species: Archae - 5; Bacteria - 132; Metazoa - 985; Fungi - 249; Plants - 75; Viruses - 14; Other Eukaryotes - 1536 (source: NCBI BLink).  protein_id AT1G55928.1p  transcript_id AT1G55928.1  protein_id AT1G55928.1p  transcript_id AT1G55928.1  
At1g55930	chr1:020918895	0.0	W/20918895-20919446,20919578-20919675,20919769-20919862,20919936-20920013,20920115-20920218,20920333-20920414,20920492-20920631,20920714-20920792,20920904-20920967,20921067-20921158,20921241-20921306,20921443-20921559,20921671-20921850,20921918-20922133	AT1G55930.1  CDS  gene_syn F14J16.20, F14J16_20  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product CBS domain-containing protein / transporter associated domain-containing protein  note CBS domain-containing protein / transporter associated domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Transporter-associated region (InterPro:IPR005170), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein / transporter associated domain-containing protein (TAIR:AT3G13070.1); Has 10142 Blast hits to 10142 proteins in 1411 species: Archae - 80; Bacteria - 6182; Metazoa - 215; Fungi - 97; Plants - 96; Viruses - 0; Other Eukaryotes - 3472 (source: NCBI BLink).  protein_id AT1G55930.1p  transcript_id AT1G55930.1  protein_id AT1G55930.1p  transcript_id AT1G55930.1  
At1g55940	chr1:020925193	0.0	C/20925193-20925619,20924343-20924559,20923926-20924256,20923669-20923821,20923326-20923586,20923154-20923246,20922989-20923067,20922543-20922901	AT1G55940.1  CDS  gene_syn CYP708A1, F14J16.21, F14J16_21  gene CYP708A1  function member of CYP708A  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function oxygen binding|GO:0019825||ISS  product CYP708A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP708A1; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot, shoot apex, hypocotyl, root, leaf; EXPRESSED DURING: LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: F-box associated type 3 (InterPro:IPR013187), Cytochrome P450 (InterPro:IPR001128), F-box associated type 1 (InterPro:IPR017451), Cytochrome P450, E-class, group IV (InterPro:IPR002403), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP708A3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G78490.1); Has 23227 Blast hits to 23183 proteins in 1255 species: Archae - 32; Bacteria - 3732; Metazoa - 9641; Fungi - 3779; Plants - 4821; Viruses - 6; Other Eukaryotes - 1216 (source: NCBI BLink).  protein_id AT1G55940.1p  transcript_id AT1G55940.1  protein_id AT1G55940.1p  transcript_id AT1G55940.1  
At1g55950	chr1:020926839	0.0	C/20926839-20927450	AT1G55950.1  CDS  gene_syn F14J16.23, F14J16_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related (TAIR:AT2G01370.1); Has 68 Blast hits to 68 proteins in 5 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G55950.1p  transcript_id AT1G55950.1  protein_id AT1G55950.1p  transcript_id AT1G55950.1  
At1g55960	chr1:020929593	0.0	C/20929593-20929825,20929249-20929396,20928903-20929169,20928728-20928809,20928360-20928556,20927962-20928246	AT1G55960.1  CDS  gene_syn F14J16.24, F14J16_24  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13062.2); Has 177 Blast hits to 177 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT1G55960.1p  transcript_id AT1G55960.1  protein_id AT1G55960.1p  transcript_id AT1G55960.1  
At1g55964	chr1:020931032	0.0	W/20931032-20931975	AT1G55964.1  pseudogenic_transcript  pseudo  function pseudogene of myb family transcription factor  
At1g55970	chr1:020938154	0.0	C/20938154-20938290,20937640-20938046,20937298-20937552,20935876-20937188,20935403-20935699,20935019-20935297,20934754-20934882,20934565-20934666,20934470-20934526,20934237-20934379,20933836-20934151,20933618-20933757,20933454-20933532,20932963-20933367,20932661-20932860,20932451-20932562	AT1G55970.1  CDS  gene_syn ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ATHPCAT2, F14J16.27, F14J16_27, HAC02, HAC04, HAC4, HAC6, HAG04, HAG4, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 4, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 6, HISTONE ACETYLTRANSFERASE OF THE GNAT/MYST SUPERFAMILY 04, HISTONE ACETYLTRANSFERASE OF THE GNAT/MYST SUPERFAMILY 4  gene HAC4  function HAC4 is most likely to be an expressed pseudogene that lacks HAT function. there is a single nucleotide deletion in both the HAC4 genomic and cDNA sequences relative to its homologs. The resulting frameshift within the open reading frame causes a stop codon to occur within the predicted acetyltransferase catalytic domain.  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function histone acetyltransferase activity|GO:0004402|12466527|ISS  go_function histone acetyltransferase activity|GO:0004402||ISS  product HAC4 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 4); histone acetyltransferase  note HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 4 (HAC4); FUNCTIONS IN: histone acetyltransferase activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, TAZ-type (InterPro:IPR000197), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, ZZ-type (InterPro:IPR000433), Transcriptional coactivation (InterPro:IPR009255); BEST Arabidopsis thaliana protein match is: HAC5; H3/H4 histone acetyltransferase/ histone acetyltransferase (TAIR:AT3G12980.1); Has 545 Blast hits to 399 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 342; Fungi - 14; Plants - 146; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT1G55970.1p  transcript_id AT1G55970.1  protein_id AT1G55970.1p  transcript_id AT1G55970.1  
At1g55980	chr1:020941702	0.0	C/20941702-20941813,20941448-20941507,20941269-20941318,20941104-20941185,20940956-20941002,20940722-20940773,20940527-20940625,20940343-20940442,20940087-20940267,20939866-20939938,20939597-20939776,20939406-20939503,20939204-20939292,20938899-20939076	AT1G55980.1  CDS  gene_syn F14J16.28  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product electron carrier/ oxidoreductase  note electron carrier/ oxidoreductase; FUNCTIONS IN: electron carrier activity, oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: FAD dependent oxidoreductase (InterPro:IPR006076), Adrenodoxin reductase (InterPro:IPR000759); BEST Arabidopsis thaliana protein match is: amine oxidase-related (TAIR:AT1G56000.1); Has 1453 Blast hits to 1453 proteins in 262 species: Archae - 12; Bacteria - 471; Metazoa - 16; Fungi - 17; Plants - 82; Viruses - 0; Other Eukaryotes - 855 (source: NCBI BLink).  protein_id AT1G55980.1p  transcript_id AT1G55980.1  protein_id AT1G55980.1p  transcript_id AT1G55980.1  
At1g55990	chr1:020942660	0.0	C/20942660-20942951,20942487-20942614	AT1G55990.1  CDS  gene_syn F14J16.30, F14J16_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G33610.1); Has 190 Blast hits to 140 proteins in 35 species: Archae - 0; Bacteria - 154; Metazoa - 7; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G55990.1p  transcript_id AT1G55990.1  protein_id AT1G55990.1p  transcript_id AT1G55990.1  
At1g56000	chr1:020944149	0.0	W/20944149-20944236,20944321-20944420,20944496-20944676,20944825-20944897,20944987-20945166,20945260-20945357,20945471-20945559,20945686-20945859,20945930-20946101	AT1G56000.1  CDS  gene_syn F14J16.31, F14J16_31  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product amine oxidase-related  note amine oxidase-related; FUNCTIONS IN: electron carrier activity, oxidoreductase activity; CONTAINS InterPro DOMAIN/s: FAD dependent oxidoreductase (InterPro:IPR006076), Adrenodoxin reductase (InterPro:IPR000759); BEST Arabidopsis thaliana protein match is: electron carrier/ oxidoreductase (TAIR:AT1G55980.1); Has 1723 Blast hits to 1723 proteins in 262 species: Archae - 12; Bacteria - 464; Metazoa - 16; Fungi - 17; Plants - 83; Viruses - 0; Other Eukaryotes - 1131 (source: NCBI BLink).  protein_id AT1G56000.1p  transcript_id AT1G56000.1  protein_id AT1G56000.1p  transcript_id AT1G56000.1  
At1g56010	chr1:020947449	0.0	C/20947449-20947727,20946852-20947346	AT1G56010.1  CDS  gene_syn ANAC022, Arabidopsis NAC domain containing protein 21, Arabidopsis NAC domain containing protein 22, F14J16.32, NAC1, anac021  gene NAC1  function Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl, auxins, ethylene). NAC1 (NAC1)  go_process multicellular organismal development|GO:0007275||ISS  go_process response to salt stress|GO:0009651|16359384|IEP  go_process response to ethylene stimulus|GO:0009723|16359384|IEP  go_process response to auxin stimulus|GO:0009733|16359384|IEP  go_process auxin mediated signaling pathway|GO:0009734|11114891|TAS  go_process primary shoot apical meristem specification|GO:0010072|16359384|TAS  go_process lateral root development|GO:0048527|16359384|TAS  go_function transcription factor activity|GO:0003700|11114891|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|16359384|TAS  product NAC1; transcription factor  note NAC1; FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 7 processes; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT3G12977.1); Has 1498 Blast hits to 1496 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1498; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G56010.1p  transcript_id AT1G56010.1  protein_id AT1G56010.1p  transcript_id AT1G56010.1  
At1g56010	chr1:020948946	0.0	C/20948946-20949144,20947449-20947729,20946852-20947346	AT1G56010.2  CDS  gene_syn ANAC022, Arabidopsis NAC domain containing protein 21, Arabidopsis NAC domain containing protein 22, F14J16.32, NAC1, anac021  gene NAC1  function Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl, auxins, ethylene). NAC1 (NAC1)  go_process multicellular organismal development|GO:0007275||ISS  go_process response to salt stress|GO:0009651|16359384|IEP  go_process response to ethylene stimulus|GO:0009723|16359384|IEP  go_process response to auxin stimulus|GO:0009733|16359384|IEP  go_process auxin mediated signaling pathway|GO:0009734|11114891|TAS  go_process primary shoot apical meristem specification|GO:0010072|16359384|TAS  go_process lateral root development|GO:0048527|16359384|TAS  go_function transcription factor activity|GO:0003700|11114891|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|16359384|TAS  product NAC1; transcription factor  note NAC1; FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 7 processes; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT3G12977.1); Has 1592 Blast hits to 1590 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1592; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G56010.2p  transcript_id AT1G56010.2  protein_id AT1G56010.2p  transcript_id AT1G56010.2  
At1g56020	chr1:020952216	0.0	W/20952216-20953412	AT1G56020.1  CDS  gene_syn F14J16.33  product unknown protein  note unknown protein; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12970.1); Has 3019 Blast hits to 826 proteins in 151 species: Archae - 0; Bacteria - 130; Metazoa - 604; Fungi - 254; Plants - 79; Viruses - 8; Other Eukaryotes - 1944 (source: NCBI BLink).  protein_id AT1G56020.1p  transcript_id AT1G56020.1  protein_id AT1G56020.1p  transcript_id AT1G56020.1  
At1g56030	chr1:020958278	0.0	C/20958278-20958550,20958059-20958190,20957432-20957965,20957098-20957274	AT1G56030.1  CDS  gene_syn T6H22.25, T6H22_25  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process RNA metabolic process|GO:0016070||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function protein binding|GO:0005515||IEA  go_process translation|GO:0006412||ISS  go_function RNA binding|GO:0003723||ISS  product MIF4G domain-containing protein / U-box domain-containing protein  note MIF4G domain-containing protein / U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, RNA binding; INVOLVED IN: translation, RNA metabolic process, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), MIF4G-like, type 3 (InterPro:IPR003890); BEST Arabidopsis thaliana protein match is: binding / protein binding / ubiquitin-protein ligase (TAIR:AT1G56040.1); Has 1170 Blast hits to 1100 proteins in 120 species: Archae - 5; Bacteria - 45; Metazoa - 303; Fungi - 18; Plants - 565; Viruses - 3; Other Eukaryotes - 231 (source: NCBI BLink).  protein_id AT1G56030.1p  transcript_id AT1G56030.1  protein_id AT1G56030.1p  transcript_id AT1G56030.1  
At1g56040	chr1:020962264	0.0	C/20962264-20962334,20961974-20962067,20961583-20961900,20961360-20961491,20960603-20961271,20960356-20960529	AT1G56040.1  CDS  gene_syn T6H22.23, T6H22_23  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process RNA metabolic process|GO:0016070||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  product binding / protein binding / ubiquitin-protein ligase  note binding / protein binding / ubiquitin-protein ligase; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, binding; INVOLVED IN: RNA metabolic process, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), MIF4G-like, type 3 (InterPro:IPR003890), Armadillo-type fold (InterPro:IPR016024), MIF4-like, type 1/2/3 (InterPro:IPR016021); BEST Arabidopsis thaliana protein match is: MIF4G domain-containing protein / U-box domain-containing protein (TAIR:AT1G56030.1); Has 45254 Blast hits to 26460 proteins in 1256 species: Archae - 454; Bacteria - 3657; Metazoa - 24320; Fungi - 2776; Plants - 1945; Viruses - 147; Other Eukaryotes - 11955 (source: NCBI BLink).  protein_id AT1G56040.1p  transcript_id AT1G56040.1  protein_id AT1G56040.1p  transcript_id AT1G56040.1  
At1g56045	chr1:020962686	0.0	W/20962686-20962697,20963203-20963268	AT1G56045.1  CDS  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L41 family protein  note ribosomal protein L41 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome; CONTAINS InterPro DOMAIN/s: Ribosomal protein L41 (InterPro:IPR007836); Has 170 Blast hits to 170 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 77; Fungi - 35; Plants - 49; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G56045.1p  transcript_id AT1G56045.1  protein_id AT1G56045.1p  transcript_id AT1G56045.1  
At1g56050	chr1:020963793	0.0	W/20963793-20964011,20964099-20964287,20964371-20964424,20964499-20964609,20964879-20964941,20965032-20965286,20965394-20965540,20965618-20965645,20965732-20965802,20965951-20966010,20966113-20966181	AT1G56050.1  CDS  gene_syn T6H22.14, T6H22_14  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_function GTP binding|GO:0005525||IEA  go_process biological_process|GO:0008150||ND  product GTP-binding protein-related  note GTP-binding protein-related; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF933 (InterPro:IPR013029), TGS-like (InterPro:IPR012676), GTP1/OBG (InterPro:IPR006073), Conserved hypothetical protein CHP00092 (InterPro:IPR004396), GTP-binding protein, HSR1-related (InterPro:IPR002917), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: GTP binding (TAIR:AT1G30580.1); Has 12412 Blast hits to 12408 proteins in 1586 species: Archae - 237; Bacteria - 4992; Metazoa - 658; Fungi - 401; Plants - 151; Viruses - 0; Other Eukaryotes - 5973 (source: NCBI BLink).  protein_id AT1G56050.1p  transcript_id AT1G56050.1  protein_id AT1G56050.1p  transcript_id AT1G56050.1  
At1g56060	chr1:020967109	0.0	C/20967109-20967133,20966863-20967007,20966737-20966782	AT1G56060.1  CDS  gene_syn T6H22.17, T6H22_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32190.1); Has 124 Blast hits to 124 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 9; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G56060.1p  transcript_id AT1G56060.1  protein_id AT1G56060.1p  transcript_id AT1G56060.1  
At1g56070	chr1:020971075	0.0	C/20971075-20971077,20970907-20970994,20968245-20970685	AT1G56070.1  CDS  gene_syn AT1G56075, AT1G56075.1, LOS1, Low expression of osmotically responsive genes 1, T6H22.13, T6H22.24, T6H22_13  gene LOS1  function encodes a translation elongation factor 2-like protein that is involved in cold-induced translation. Mutations in this gene specifically blocks low temperature-induced transcription of cold-responsive genes but induces the expression of CBF genes and mutants carrying the recessive mutations fail to acclimate to cold and is freezing sensitive.  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function copper ion binding|GO:0005507|16526091|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process response to cold|GO:0009409|12032361|IMP  go_function translation elongation factor activity|GO:0003746||ISS  go_function translation factor activity, nucleic acid binding|GO:0008135||ISS  product LOS1; copper ion binding / translation elongation factor/ translation factor, nucleic acid binding  note LOS1; FUNCTIONS IN: translation factor activity, nucleic acid binding, copper ion binding, translation elongation factor activity; INVOLVED IN: response to cold; LOCATED IN: cytosol, nucleolus, chloroplast, plasma membrane, membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EFG/EF2, domain IV (InterPro:IPR005517), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721), Elongation factor G, III and V (InterPro:IPR009022), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: GTP binding / GTPase (TAIR:AT3G12915.1); Has 42666 Blast hits to 38816 proteins in 3090 species: Archae - 921; Bacteria - 22357; Metazoa - 2559; Fungi - 1245; Plants - 829; Viruses - 0; Other Eukaryotes - 14755 (source: NCBI BLink).  protein_id AT1G56070.1p  transcript_id AT1G56070.1  protein_id AT1G56070.1p  transcript_id AT1G56070.1  
At1g56080	chr1:020975946	0.0	C/20975946-20976215,20975778-20975846,20975636-20975689,20975500-20975542,20975341-20975376,20974957-20975202,20974819-20974864,20974652-20974730,20974457-20974546	AT1G56080.1  CDS  gene_syn T6H22.12, T6H22_12  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16520.1); Has 125 Blast hits to 123 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 3; Plants - 76; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT1G56080.1p  transcript_id AT1G56080.1  protein_id AT1G56080.1p  transcript_id AT1G56080.1  
At1g56085	chr1:020976515	0.0	W/20976515-20976522,20976773-20976900,20977079-20977207,20977345-20977541	AT1G56085.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: CYP59 (CYCLOPHILIN 59); RNA binding / nucleic acid binding / peptidyl-prolyl cis-trans isomerase (TAIR:AT1G53720.1); Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G56085.1p  transcript_id AT1G56085.1  protein_id AT1G56085.1p  transcript_id AT1G56085.1  
At1g56090	chr1:020979000	0.0	C/20979000-20979185,20978534-20978722,20977989-20978432	AT1G56090.1  CDS  gene_syn T6H22.6, T6H22_6  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product tetratricopeptide repeat (TPR)-containing protein  note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: ROF1 (ROTAMASE FKBP 1); FK506 binding / calmodulin binding / peptidyl-prolyl cis-trans isomerase (TAIR:AT3G25230.2); Has 4281 Blast hits to 3841 proteins in 306 species: Archae - 16; Bacteria - 269; Metazoa - 2216; Fungi - 437; Plants - 507; Viruses - 6; Other Eukaryotes - 830 (source: NCBI BLink).  protein_id AT1G56090.1p  transcript_id AT1G56090.1  protein_id AT1G56090.1p  transcript_id AT1G56090.1  
At1g56100	chr1:020983758	0.0	C/20983758-20983888,20983374-20983668	AT1G56100.3  CDS  gene_syn T6H22.11, T6H22_11  go_process biological_process|GO:0008150||ND  product pectinesterase inhibitor domain-containing protein  note pectinesterase inhibitor domain-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: embryo, sepal; EXPRESSED DURING: 4 anthesis, C globular stage; BEST Arabidopsis thaliana protein match is: enzyme inhibitor/ pectinesterase (TAIR:AT4G00872.1).  protein_id AT1G56100.3p  transcript_id AT1G56100.3  protein_id AT1G56100.3p  transcript_id AT1G56100.3  
At1g56100	chr1:020983758	0.0	C/20983758-20983979,20982068-20982182,20981637-20981747,20981437-20981537,20980369-20980518	AT1G56100.1  CDS  gene_syn T6H22.11, T6H22_11  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  product pectinesterase inhibitor domain-containing protein  note pectinesterase inhibitor domain-containing protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, sepal; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: enzyme inhibitor/ pectinesterase (TAIR:AT4G00872.1); Has 669 Blast hits to 508 proteins in 102 species: Archae - 2; Bacteria - 18; Metazoa - 226; Fungi - 61; Plants - 51; Viruses - 2; Other Eukaryotes - 309 (source: NCBI BLink).  protein_id AT1G56100.1p  transcript_id AT1G56100.1  protein_id AT1G56100.1p  transcript_id AT1G56100.1  
At1g56100	chr1:020983762	0.0	C/20983762-20983979,20983374-20983668	AT1G56100.2  CDS  gene_syn T6H22.11, T6H22_11  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  product pectinesterase inhibitor domain-containing protein  note pectinesterase inhibitor domain-containing protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, sepal; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: enzyme inhibitor/ pectinesterase (TAIR:AT4G00872.1).  protein_id AT1G56100.2p  transcript_id AT1G56100.2  protein_id AT1G56100.2p  transcript_id AT1G56100.2  
At1g56110	chr1:020986689	0.0	C/20986689-20986893,20986224-20986438,20985974-20986131,20985704-20985891,20985355-20985607,20985123-20985271,20984902-20985033,20984544-20984812	AT1G56110.1  CDS  gene_syn Arabidopsis homolog of nucleolar protein Nop56, NOP56, NOP56-LIKE PROTEIN, T6H22.10, T6H22_10  gene NOP56  function NOP56-like protein  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component nucleolus|GO:0005730|15610358|IDA  product NOP56 (Arabidopsis homolog of nucleolar protein Nop56)  note Arabidopsis homolog of nucleolar protein Nop56 (NOP56); LOCATED IN: nucleolus, cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pre-mRNA processing ribonucleoprotein, binding region (InterPro:IPR002687), NOP5, N-terminal (InterPro:IPR012974), NOSIC (InterPro:IPR012976); BEST Arabidopsis thaliana protein match is: nucleolar protein Nop56, putative (TAIR:AT3G12860.1); Has 25119 Blast hits to 11501 proteins in 664 species: Archae - 170; Bacteria - 1109; Metazoa - 10612; Fungi - 2439; Plants - 1027; Viruses - 176; Other Eukaryotes - 9586 (source: NCBI BLink).  protein_id AT1G56110.1p  transcript_id AT1G56110.1  protein_id AT1G56110.1p  transcript_id AT1G56110.1  
At1g56120	chr1:020993024	0.0	C/20993024-20993072,20992579-20992765,20992421-20992492,20992245-20992316,20992081-20992152,20991907-20991978,20991684-20991755,20991527-20991598,20991363-20991434,20991206-20991277,20991027-20991098,20990754-20990825,20990588-20990653,20990288-20990353,20990059-20990103,20989394-20989961,20989109-20989307,20988862-20989020,20988619-20988737,20988294-20988504,20987980-20988211,20987748-20987898,20987288-20987659	AT1G56120.1  CDS  gene_syn T6H22.9, T6H22_9  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product kinase  note kinase; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / protein kinase family protein (TAIR:AT1G56130.1); Has 120951 Blast hits to 94543 proteins in 3379 species: Archae - 64; Bacteria - 8954; Metazoa - 42564; Fungi - 7231; Plants - 44668; Viruses - 412; Other Eukaryotes - 17058 (source: NCBI BLink).  protein_id AT1G56120.1p  transcript_id AT1G56120.1  protein_id AT1G56120.1p  transcript_id AT1G56120.1  
At1g56130	chr1:021000764	0.0	C/21000764-21000887,21000347-21000533,21000129-21000200,20999967-21000038,20999801-20999872,20999626-20999697,20999399-20999470,20999237-20999308,20999016-20999087,20998858-20998929,20998678-20998749,20998334-20998405,20998170-20998235,20997926-20997991,20997747-20997791,20997553-20997614,20997059-20997441,20996756-20996954,20996502-20996660,20996271-20996389,20995947-20996157,20995632-20995863,20995394-20995544,20994931-20995305	AT1G56130.1  CDS  gene_syn T6H22.8, T6H22_8  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component membrane|GO:0016020|11152613|ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat family protein / protein kinase family protein  note leucine-rich repeat family protein / protein kinase family protein; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / protein kinase family protein (TAIR:AT1G56140.1); Has 124592 Blast hits to 94252 proteins in 3309 species: Archae - 62; Bacteria - 9381; Metazoa - 43749; Fungi - 7215; Plants - 46446; Viruses - 407; Other Eukaryotes - 17332 (source: NCBI BLink).  protein_id AT1G56130.1p  transcript_id AT1G56130.1  protein_id AT1G56130.1p  transcript_id AT1G56130.1  
At1g56140	chr1:021007605	0.0	C/21007605-21007725,21007175-21007361,21006954-21007025,21006796-21006867,21006604-21006675,21006431-21006502,21006201-21006272,21005997-21006068,21005807-21005878,21005648-21005716,21005494-21005565,21005211-21005282,21005060-21005125,21004762-21004827,21004533-21004577,21004348-21004409,21003882-21004264,21003574-21003772,21003334-21003492,21003104-21003222,21002767-21002977,21002448-21002679,21002211-21002361,21001708-21002088	AT1G56140.1  CDS  gene_syn T6H22.26, T6H22_26  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_function protein kinase activity|GO:0004672||ISS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein / protein kinase family protein  note leucine-rich repeat family protein / protein kinase family protein; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / protein kinase family protein (TAIR:AT1G56130.1); Has 127172 Blast hits to 96428 proteins in 3412 species: Archae - 77; Bacteria - 9290; Metazoa - 44847; Fungi - 7456; Plants - 47226; Viruses - 408; Other Eukaryotes - 17868 (source: NCBI BLink).  protein_id AT1G56140.1p  transcript_id AT1G56140.1  protein_id AT1G56140.1p  transcript_id AT1G56140.1  
At1g56145	chr1:021013826	0.0	C/21013826-21013934,21013438-21013624,21013292-21013363,21013139-21013210,21012982-21013053,21012827-21012898,21012591-21012662,21012391-21012462,21012179-21012250,21012025-21012096,21011850-21011921,21011627-21011698,21011475-21011540,21011264-21011329,21011119-21011163,21010931-21010992,21010444-21010820,21009946-21010144,21009709-21009867,21009492-21009610,21009177-21009387,21008864-21009095,21008633-21008783,21008225-21008560	AT1G56145.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function protein kinase activity|GO:0004672||ISS  product leucine-rich repeat family protein / protein kinase family protein  note leucine-rich repeat family protein / protein kinase family protein; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / protein kinase family protein (TAIR:AT1G56130.1); Has 123194 Blast hits to 93838 proteins in 3359 species: Archae - 70; Bacteria - 9191; Metazoa - 42624; Fungi - 6961; Plants - 46479; Viruses - 395; Other Eukaryotes - 17474 (source: NCBI BLink).  protein_id AT1G56145.1p  transcript_id AT1G56145.1  protein_id AT1G56145.1p  transcript_id AT1G56145.1  
At1g56150	chr1:021017432	0.0	W/21017432-21017764	AT1G56150.1  CDS  gene_syn F14G9.23  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT3G12830.1); Has 573 Blast hits to 571 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 572; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G56150.1p  transcript_id AT1G56150.1  protein_id AT1G56150.1p  transcript_id AT1G56150.1  
At1g56160	chr1:021022384	0.0	W/21022384-21022522,21022608-21022737,21022823-21023444	AT1G56160.1  CDS  gene_syn ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 72, ATMYB72, F14G9.22, MYB DOMAIN PROTEIN 72, MYB72  gene MYB72  function Encodes a member of the R2R3 transcription factor gene family that is involved in mediating induced systemic resistance. Genetic analysis of loss of function mutants and overexpressor lines indicates MYB72 is necessary but not sufficient for ISR.Interacts in vivo with EIL3.  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process induced systemic resistance, ethylene mediated signaling pathway|GO:0009866|18218967|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product MYB72 (MYB DOMAIN PROTEIN 72); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 72 (MYB72); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, induced systemic resistance, ethylene mediated signaling pathway; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB63 (MYB DOMAIN PROTEIN 63); DNA binding / transcription activator/ transcription factor (TAIR:AT1G79180.1); Has 6257 Blast hits to 5815 proteins in 367 species: Archae - 0; Bacteria - 0; Metazoa - 652; Fungi - 276; Plants - 3752; Viruses - 5; Other Eukaryotes - 1572 (source: NCBI BLink).  protein_id AT1G56160.1p  transcript_id AT1G56160.1  protein_id AT1G56160.1p  transcript_id AT1G56160.1  
At1g56165	chr1:021022759	0.0	C/21022759-21024402	AT1G56165.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G56160  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G56165.1  
At1g56170	chr1:021025118	0.0	W/21025118-21025717	AT1G56170.1  CDS  gene_syn ATHAP5B, F14G9.21, HAP5B, NF-YC2, NUCLEAR FACTOR Y, SUBUNIT C2  gene NF-YC2  function Encodes a protein with similarity to a subunit of the CCAAT promoter motif binding complex of yeast.One of two members of this class (HAP5B) and expressed in vegetative and reproductive tissues  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleus|GO:0005634||ISS  go_component cytoplasm|GO:0005737|15610358|IDA  go_component CCAAT-binding factor complex|GO:0016602|9662544|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355|9662544|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process positive regulation of gene-specific transcription|GO:0043193|19207209|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9662544|ISS  go_function transcription activator activity|GO:0016563|19207209|IDA  product NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2); DNA binding / transcription activator/ transcription factor  note NUCLEAR FACTOR Y, SUBUNIT C2 (NF-YC2); FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, positive regulation of gene-specific transcription; LOCATED IN: CCAAT-binding factor complex, nucleus, cytoplasm; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9); DNA binding / transcription factor (TAIR:AT1G08970.4); Has 1055 Blast hits to 1055 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 487; Fungi - 221; Plants - 253; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).  protein_id AT1G56170.1p  transcript_id AT1G56170.1  protein_id AT1G56170.1p  transcript_id AT1G56170.1  
At1g56170	chr1:021025118	0.0	W/21025118-21025717	AT1G56170.2  CDS  gene_syn ATHAP5B, F14G9.21, HAP5B, NF-YC2, NUCLEAR FACTOR Y, SUBUNIT C2  gene NF-YC2  function Encodes a protein with similarity to a subunit of the CCAAT promoter motif binding complex of yeast.One of two members of this class (HAP5B) and expressed in vegetative and reproductive tissues  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleus|GO:0005634||ISS  go_component cytoplasm|GO:0005737|15610358|IDA  go_component CCAAT-binding factor complex|GO:0016602|9662544|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355|9662544|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process positive regulation of gene-specific transcription|GO:0043193|19207209|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9662544|ISS  go_function transcription activator activity|GO:0016563|19207209|IDA  product NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2); DNA binding / transcription activator/ transcription factor  note NUCLEAR FACTOR Y, SUBUNIT C2 (NF-YC2); FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, positive regulation of gene-specific transcription; LOCATED IN: CCAAT-binding factor complex, nucleus, cytoplasm; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9); DNA binding / transcription factor (TAIR:AT1G08970.4); Has 1055 Blast hits to 1055 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 487; Fungi - 221; Plants - 253; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).  protein_id AT1G56170.2p  transcript_id AT1G56170.2  protein_id AT1G56170.2p  transcript_id AT1G56170.2  
At1g56180	chr1:021027630	0.0	C/21027630-21028047,21027421-21027480,21027085-21027333,21026925-21027001,21026731-21026807,21026517-21026649,21026243-21026398	AT1G56180.1  CDS  gene_syn F14G9.20  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27290.1); Has 333 Blast hits to 332 proteins in 62 species: Archae - 0; Bacteria - 123; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).  protein_id AT1G56180.1p  transcript_id AT1G56180.1  protein_id AT1G56180.1p  transcript_id AT1G56180.1  
At1g56190	chr1:021028403	0.0	W/21028403-21028813,21028894-21028971,21029055-21029315,21029565-21029882,21030005-21030163,21030245-21030454	AT1G56190.1  CDS  gene_syn F14G9.19, F14G9_19  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function phosphoglycerate kinase activity|GO:0004618||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process glycolysis|GO:0006096||ISS  go_function phosphoglycerate kinase activity|GO:0004618||ISS  product phosphoglycerate kinase, putative  note phosphoglycerate kinase, putative; FUNCTIONS IN: phosphoglycerate kinase activity; INVOLVED IN: response to cadmium ion, glycolysis; LOCATED IN: thylakoid, mitochondrion, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate kinase, N-terminal (InterPro:IPR015824), Phosphoglycerate kinase (InterPro:IPR001576), Phosphoglycerate kinase, C-terminal (InterPro:IPR015901), Phosphoglycerate kinase, conserved site (InterPro:IPR015911); BEST Arabidopsis thaliana protein match is: PGK1 (PHOSPHOGLYCERATE KINASE 1); phosphoglycerate kinase (TAIR:AT3G12780.1); Has 8089 Blast hits to 8068 proteins in 1791 species: Archae - 166; Bacteria - 2876; Metazoa - 368; Fungi - 140; Plants - 376; Viruses - 0; Other Eukaryotes - 4163 (source: NCBI BLink).  protein_id AT1G56190.1p  transcript_id AT1G56190.1  protein_id AT1G56190.1p  transcript_id AT1G56190.1  
At1g56190	chr1:021028622	0.0	W/21028622-21028813,21028894-21028971,21029055-21029315,21029565-21029882,21030005-21030163,21030245-21030454	AT1G56190.2  CDS  gene_syn F14G9.19, F14G9_19  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function phosphoglycerate kinase activity|GO:0004618||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process glycolysis|GO:0006096||ISS  go_function phosphoglycerate kinase activity|GO:0004618||ISS  product phosphoglycerate kinase, putative  note phosphoglycerate kinase, putative; FUNCTIONS IN: phosphoglycerate kinase activity; INVOLVED IN: glycolysis; LOCATED IN: thylakoid, mitochondrion, chloroplast, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate kinase, N-terminal (InterPro:IPR015824), Phosphoglycerate kinase (InterPro:IPR001576), Phosphoglycerate kinase, C-terminal (InterPro:IPR015901), Phosphoglycerate kinase, conserved site (InterPro:IPR015911); BEST Arabidopsis thaliana protein match is: PGK1 (PHOSPHOGLYCERATE KINASE 1); phosphoglycerate kinase (TAIR:AT3G12780.1); Has 8105 Blast hits to 8084 proteins in 1799 species: Archae - 166; Bacteria - 2889; Metazoa - 368; Fungi - 141; Plants - 378; Viruses - 0; Other Eukaryotes - 4163 (source: NCBI BLink).  protein_id AT1G56190.2p  transcript_id AT1G56190.2  protein_id AT1G56190.2p  transcript_id AT1G56190.2  
At1g56200	chr1:021030852	0.0	W/21030852-21030900,21031092-21031228,21031357-21031432,21031693-21031886	AT1G56200.2  CDS  gene_syn F14G9.26, F14G9_26, emb1303, embryo defective 1303  gene emb1303  go_component chloroplast|GO:0009507||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product emb1303 (embryo defective 1303)  note embryo defective 1303 (emb1303); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30475.3); Has 45 Blast hits to 45 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G56200.2p  transcript_id AT1G56200.2  protein_id AT1G56200.2p  transcript_id AT1G56200.2  
At1g56200	chr1:021030852	0.0	W/21030852-21030909,21031092-21031228,21031357-21031432,21031693-21031886	AT1G56200.1  CDS  gene_syn F14G9.26, F14G9_26, emb1303, embryo defective 1303  gene emb1303  go_component chloroplast|GO:0009507||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product emb1303 (embryo defective 1303)  note embryo defective 1303 (emb1303); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30475.3); Has 46 Blast hits to 46 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G56200.1p  transcript_id AT1G56200.1  protein_id AT1G56200.1p  transcript_id AT1G56200.1  
At1g56210	chr1:021035715	0.0	W/21035715-21035834,21035959-21036034,21036121-21037019	AT1G56210.1  CDS  gene_syn F14G9.18, F14G9_18  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product copper chaperone (CCH)-related  note copper chaperone (CCH)-related; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT5G27690.1); Has 3381 Blast hits to 2720 proteins in 263 species: Archae - 2; Bacteria - 163; Metazoa - 1093; Fungi - 463; Plants - 963; Viruses - 22; Other Eukaryotes - 675 (source: NCBI BLink).  protein_id AT1G56210.1p  transcript_id AT1G56210.1  protein_id AT1G56210.1p  transcript_id AT1G56210.1  
At1g56220	chr1:021043414	0.0	W/21043414-21043528,21043704-21043889,21044348-21044469	AT1G56220.3  CDS  gene_syn F14G9.17, F14G9_17  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product dormancy/auxin associated family protein  note dormancy/auxin associated family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dormancyauxin associated (InterPro:IPR008406); BEST Arabidopsis thaliana protein match is: dormancy/auxin associated protein-related (TAIR:AT1G54070.1); Has 130 Blast hits to 129 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G56220.3p  transcript_id AT1G56220.3  protein_id AT1G56220.3p  transcript_id AT1G56220.3  
At1g56220	chr1:021043414	0.0	W/21043414-21043528,21043704-21043889,21044357-21044469	AT1G56220.1  CDS  gene_syn F14G9.17, F14G9_17  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product dormancy/auxin associated family protein  note dormancy/auxin associated family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dormancyauxin associated (InterPro:IPR008406); BEST Arabidopsis thaliana protein match is: dormancy/auxin associated protein-related (TAIR:AT1G54070.1); Has 131 Blast hits to 130 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G56220.1p  transcript_id AT1G56220.1  protein_id AT1G56220.1p  transcript_id AT1G56220.1  
At1g56220	chr1:021043414	0.0	W/21043414-21043528,21043704-21043893,21044348-21044381	AT1G56220.2  CDS  gene_syn F14G9.17, F14G9_17  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product dormancy/auxin associated family protein  note dormancy/auxin associated family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dormancyauxin associated (InterPro:IPR008406); BEST Arabidopsis thaliana protein match is: dormancy/auxin associated protein-related (TAIR:AT1G54070.1); Has 127 Blast hits to 127 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 126; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G56220.2p  transcript_id AT1G56220.2  protein_id AT1G56220.2p  transcript_id AT1G56220.2  
At1g56220	chr1:021043414	0.0	W/21043414-21043528,21043704-21043893,21044357-21044381	AT1G56220.4  CDS  gene_syn F14G9.17, F14G9_17  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product dormancy/auxin associated family protein  note dormancy/auxin associated family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dormancyauxin associated (InterPro:IPR008406); BEST Arabidopsis thaliana protein match is: dormancy/auxin associated protein-related (TAIR:AT1G54070.1); Has 127 Blast hits to 127 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 126; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G56220.4p  transcript_id AT1G56220.4  protein_id AT1G56220.4p  transcript_id AT1G56220.4  
At1g56230	chr1:021048769	0.0	C/21048769-21048959,21048460-21048574,21047720-21048382,21047113-21047639,21046904-21047028,21046668-21046819,21046111-21046596	AT1G56230.1  CDS  gene_syn F14G9.16, F14G9_16  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1399 (InterPro:IPR009836); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G22660.2); Has 88 Blast hits to 84 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 10; Plants - 63; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G56230.1p  transcript_id AT1G56230.1  protein_id AT1G56230.1p  transcript_id AT1G56230.1  
At1g56233	chr1:021050939	0.0	C/21050939-21051017,21050611-21050795	AT1G56233.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: LCR46 (Low-molecular-weight cysteine-rich 46) (TAIR:AT5G48945.1); Has 14 Blast hits to 14 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G56233.1p  transcript_id AT1G56233.1  protein_id AT1G56233.1p  transcript_id AT1G56233.1  
At1g56242	chr1:021056401	0.0	W/21056401-21057815	AT1G56242.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G56240  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G56242.1  
At1g56240	chr1:021057158	0.0	C/21057158-21057409,21056946-21057064,21056351-21056834	AT1G56240.1  CDS  gene_syn AtPP2-B13, F14G9.15, F14G9_15, Phloem protein 2-B13  gene AtPP2-B13  go_component endomembrane system|GO:0012505||IEA  go_function carbohydrate binding|GO:0030246|12529520|ISS  product AtPP2-B13 (Phloem protein 2-B13); carbohydrate binding  note Phloem protein 2-B13 (AtPP2-B13); FUNCTIONS IN: carbohydrate binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: AtPP2-B14 (Phloem protein 2-B14); carbohydrate binding (TAIR:AT1G56250.1); Has 307 Blast hits to 297 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 307; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G56240.1p  transcript_id AT1G56240.1  protein_id AT1G56240.1p  transcript_id AT1G56240.1  
At1g56250	chr1:021062593	0.0	C/21062593-21062844,21062380-21062498,21061746-21062223	AT1G56250.1  CDS  gene_syn AtPP2-B14, F14G9.14, F14G9_14, Phloem protein 2-B14  gene AtPP2-B14  go_component endomembrane system|GO:0012505||IEA  go_function carbohydrate binding|GO:0030246|12529520|ISS  product AtPP2-B14 (Phloem protein 2-B14); carbohydrate binding  note Phloem protein 2-B14 (AtPP2-B14); FUNCTIONS IN: carbohydrate binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: AtPP2-B13 (Phloem protein 2-B13); carbohydrate binding (TAIR:AT1G56240.1); Has 310 Blast hits to 300 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 310; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G56250.1p  transcript_id AT1G56250.1  protein_id AT1G56250.1p  transcript_id AT1G56250.1  
At1g56260	chr1:021065474	0.0	C/21065474-21065577,21065233-21065389,21064647-21064769	AT1G56260.1  CDS  gene_syn F14G9.13, F14G9_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 13 Blast hits to 13 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G56260.1p  transcript_id AT1G56260.1  protein_id AT1G56260.1p  transcript_id AT1G56260.1  
At1g56270	chr1:021071148	0.0	C/21071148-21071636	AT1G56270.1  CDS  gene_syn F14G9.12, F14G9_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G56270.1p  transcript_id AT1G56270.1  protein_id AT1G56270.1p  transcript_id AT1G56270.1  
At1g56280	chr1:021074677	0.0	C/21074677-21074725,21074057-21074199,21073927-21073974,21073898-21073924,21073561-21073799,21073366-21073477	AT1G56280.1  CDS  gene_syn ATDI19, F14G9.11, F14G9_11  gene ATDI19  function Encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The increase in transcript level is independent from abscisic acid level. Sequence is not similar to any protein of known function. It appears to be a member of plant-specific gene family. It s phosphorylated by AtCPK11 in a Ca(2+)-dependent manner at Thr105 and Ser107 within the AtDi19 bipartite nuclear localization signal  go_process response to water deprivation|GO:0009414|7823904|IEP  go_process response to water deprivation|GO:0009414||ISS  go_process response to abscisic acid stimulus|GO:0009737|7823904|IEP  product ATDI19  note ATDI19; INVOLVED IN: response to water deprivation, response to abscisic acid stimulus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Drought induced 19 (InterPro:IPR008598); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05700.1); Has 132 Blast hits to 132 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G56280.1p  transcript_id AT1G56280.1  protein_id AT1G56280.1p  transcript_id AT1G56280.1  
At1g56290	chr1:021075939	0.0	W/21075939-21075974,21076064-21076351,21076435-21076638,21076718-21076882,21076985-21077386,21077525-21077607,21077708-21078608	AT1G56290.1  CDS  gene_syn F14G9.10, F14G9_10  go_component cellular_component|GO:0005575||ND  product CwfJ-like family protein  note CwfJ-like family protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein similar to CwfJ, C-terminal 1 (InterPro:IPR006768), Protein similar to CwfJ, C-terminal 2 (InterPro:IPR006767); BEST Arabidopsis thaliana protein match is: CwfJ-like family protein / zinc finger (CCCH-type) family protein (TAIR:AT5G56900.2); Has 2202 Blast hits to 1747 proteins in 222 species: Archae - 2; Bacteria - 25; Metazoa - 988; Fungi - 216; Plants - 103; Viruses - 2; Other Eukaryotes - 866 (source: NCBI BLink).  protein_id AT1G56290.1p  transcript_id AT1G56290.1  protein_id AT1G56290.1p  transcript_id AT1G56290.1  
At1g56300	chr1:021080055	0.0	C/21080055-21080168,21079862-21079949,21079659-21079729,21079415-21079471,21079022-21079162	AT1G56300.1  CDS  gene_syn F14G9.9, F14G9_9  go_function heat shock protein binding|GO:0031072||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding, response to cyclopentenone; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: heat shock protein binding (TAIR:AT1G71000.1); Has 16149 Blast hits to 16148 proteins in 1932 species: Archae - 114; Bacteria - 5423; Metazoa - 3271; Fungi - 1388; Plants - 1186; Viruses - 10; Other Eukaryotes - 4757 (source: NCBI BLink).  protein_id AT1G56300.1p  transcript_id AT1G56300.1  protein_id AT1G56300.1p  transcript_id AT1G56300.1  
At1g56310	chr1:021082863	0.0	W/21082863-21083010,21083085-21083775,21083877-21083961,21084072-21084159,21084239-21084423,21084495-21084627,21084677-21084855,21084963-21085037,21085136-21085300	AT1G56310.1  CDS  gene_syn F14G9.8, F14G9_8  go_component intracellular|GO:0005622||IEA  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function 3 -5  exonuclease activity|GO:0008408||IEA  go_component intracellular|GO:0005622||ISS  go_function nucleic acid binding|GO:0003676||ISS  go_function 3 -5  exonuclease activity|GO:0008408||ISS  product 3 -5  exonuclease domain-containing protein  note 3 -5  exonuclease domain-containing protein; FUNCTIONS IN: 3 -5  exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), 3&apos;-5&apos; exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: 3 -5  exonuclease domain-containing protein (TAIR:AT5G24340.1); Has 1119 Blast hits to 1116 proteins in 328 species: Archae - 0; Bacteria - 427; Metazoa - 205; Fungi - 42; Plants - 106; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).  protein_id AT1G56310.1p  transcript_id AT1G56310.1  protein_id AT1G56310.1p  transcript_id AT1G56310.1  
At1g56320	chr1:021086387	0.0	C/21086387-21086459,21086226-21086305,21085919-21086144,21085722-21085834	AT1G56320.1  CDS  gene_syn F14G9.7, F14G9_7  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49350.1); Has 28 Blast hits to 28 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G56320.1p  transcript_id AT1G56320.1  protein_id AT1G56320.1p  transcript_id AT1G56320.1  
At1g56330	chr1:021088350	0.0	C/21088350-21088478,21088063-21088194,21086845-21087165	AT1G56330.1  CDS  gene_syn ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS 1B, ATSAR1, ATSAR1B, ATSARA1B, F14G9.6, F14G9_6, SAR1, SARL, SECRETION-ASSOCIATED RAS 1, SECRETION-ASSOCIATED RAS 1 B  gene ATSAR1B  function Encodes a small GTP-binding protein implicated in ER to cis-Golgi transport of other proteins. A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. The protein is found associated to the ER and free in the cytosol.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component peripheral to membrane of membrane fraction|GO:0000300|9159953|IDA  go_component endoplasmic reticulum|GO:0005783|9159953|IDA  go_component cytosol|GO:0005829|9159953|IDA  go_process rough ER to cis-Golgi vesicle-mediated transport|GO:0048221|9159953|TAS  go_function GTP binding|GO:0005525|12644670|ISS  go_function GTP binding|GO:0005525|9159953|ISS  product ATSAR1B (SECRETION-ASSOCIATED RAS 1 B); GTP binding  note SECRETION-ASSOCIATED RAS 1 B (ATSAR1B); FUNCTIONS IN: GTP binding; INVOLVED IN: rough ER to cis-Golgi vesicle-mediated transport; LOCATED IN: cytosol, peripheral to membrane of membrane fraction, endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), GTP-binding protein SAR1 (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ATSAR2 (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2); GTP binding (TAIR:AT4G02080.1); Has 5130 Blast hits to 5127 proteins in 284 species: Archae - 2; Bacteria - 29; Metazoa - 2716; Fungi - 827; Plants - 666; Viruses - 0; Other Eukaryotes - 890 (source: NCBI BLink).  protein_id AT1G56330.1p  transcript_id AT1G56330.1  protein_id AT1G56330.1p  transcript_id AT1G56330.1  
At1g56340	chr1:021092537	0.0	C/21092537-21092630,21092033-21092140,21091768-21091960,21091328-21091691,21091159-21091245,21091017-21091074,21090799-21090866,21090619-21090714,21090491-21090538,21090163-21090272,21090022-21090070	AT1G56340.2  CDS  gene_syn CALRETICULIN 1, CRT1, F14G9.5, F14G9_5  gene CRT1  function Encodes calreticulin CRT1.  go_component plasma membrane|GO:0005886|17151019|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function calcium ion binding|GO:0005509||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process response to oxidative stress|GO:0006979|12492832|IDA  go_function calcium ion binding|GO:0005509||ISS  product CRT1 (CALRETICULIN 1); calcium ion binding / unfolded protein binding  note CALRETICULIN 1 (CRT1); FUNCTIONS IN: unfolded protein binding, calcium ion binding; INVOLVED IN: response to oxidative stress, response to cadmium ion, response to salt stress; LOCATED IN: mitochondrion, endoplasmic reticulum, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Calreticulin/calnexin, P (InterPro:IPR009033), Calreticulin/calnexin (InterPro:IPR001580), Calreticulin/calnexin, conserved site (InterPro:IPR018124), Calreticulin (InterPro:IPR009169), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320); BEST Arabidopsis thaliana protein match is: calreticulin 2 (CRT2) (TAIR:AT1G09210.1); Has 1019 Blast hits to 1001 proteins in 253 species: Archae - 0; Bacteria - 12; Metazoa - 580; Fungi - 102; Plants - 171; Viruses - 0; Other Eukaryotes - 154 (source: NCBI BLink).  protein_id AT1G56340.2p  transcript_id AT1G56340.2  protein_id AT1G56340.2p  transcript_id AT1G56340.2  
At1g56340	chr1:021092537	0.0	C/21092537-21092630,21092033-21092140,21091768-21091960,21091328-21091691,21091159-21091245,21091017-21091074,21090799-21090866,21090619-21090714,21090491-21090538,21090369-21090398,21090163-21090282,21090059-21090070	AT1G56340.1  CDS  gene_syn CALRETICULIN 1, CRT1, F14G9.5, F14G9_5  gene CRT1  function Encodes calreticulin CRT1.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function calcium ion binding|GO:0005509||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process response to oxidative stress|GO:0006979|12492832|IDA  go_function calcium ion binding|GO:0005509||ISS  product CRT1 (CALRETICULIN 1); calcium ion binding / unfolded protein binding  note CALRETICULIN 1 (CRT1); FUNCTIONS IN: unfolded protein binding, calcium ion binding; INVOLVED IN: response to oxidative stress, response to cadmium ion, response to salt stress; LOCATED IN: mitochondrion, endoplasmic reticulum, plasma membrane, chloroplast; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Calreticulin/calnexin, P (InterPro:IPR009033), Calreticulin/calnexin (InterPro:IPR001580), Calreticulin/calnexin, conserved site (InterPro:IPR018124), Calreticulin (InterPro:IPR009169), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320); BEST Arabidopsis thaliana protein match is: calreticulin 2 (CRT2) (TAIR:AT1G09210.1); Has 15289 Blast hits to 6877 proteins in 542 species: Archae - 25; Bacteria - 746; Metazoa - 7766; Fungi - 1216; Plants - 546; Viruses - 345; Other Eukaryotes - 4645 (source: NCBI BLink).  protein_id AT1G56340.1p  transcript_id AT1G56340.1  protein_id AT1G56340.1p  transcript_id AT1G56340.1  
At1g56345	chr1:021094133	0.0	C/21094133-21094454,21093409-21094055	AT1G56345.1  CDS  gene_syn F14G9.4, F14G9_4  go_component endomembrane system|GO:0012505||IEA  go_process pseudouridine synthesis|GO:0001522||IEA  go_function pseudouridine synthase activity|GO:0009982|18599582|TAS  go_function pseudouridine synthase activity|GO:0009982||ISS  product pseudouridine synthase family protein  note pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase (InterPro:IPR006145), Pseudouridine synthase, conserved site (InterPro:IPR006224); Has 10665 Blast hits to 10573 proteins in 1450 species: Archae - 12; Bacteria - 6839; Metazoa - 197; Fungi - 123; Plants - 83; Viruses - 0; Other Eukaryotes - 3411 (source: NCBI BLink).  protein_id AT1G56345.1p  transcript_id AT1G56345.1  protein_id AT1G56345.1p  transcript_id AT1G56345.1  
At1g56350	chr1:021094840	0.0	W/21094840-21095241,21095868-21096080,21096263-21096364,21096443-21096580,21097040-21097344,21097453-21097606,21097692-21097826	AT1G56350.1  CDS  gene_syn F13N6.6, F13N6_6  go_component cytoplasm|GO:0005737||IEA  go_process translational termination|GO:0006415||IEA  go_function translation release factor activity|GO:0003747||IEA  go_function translation release factor activity, codon specific|GO:0016149||IEA  go_process translational termination|GO:0006415||ISS  go_function translation release factor activity|GO:0003747||ISS  product peptide chain release factor, putative  note peptide chain release factor, putative; FUNCTIONS IN: translation release factor activity, codon specific, translation release factor activity; INVOLVED IN: translational termination; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Class I peptide chain release factor (InterPro:IPR000352), Peptide chain release factor 2 (InterPro:IPR004374), Peptide chain release factor (InterPro:IPR005139); BEST Arabidopsis thaliana protein match is: HCF109 (HIGH CHLOROPHYLL FLUORESCENT 109); translation release factor/ translation release factor, codon specific (TAIR:AT5G36170.2); Has 11765 Blast hits to 11765 proteins in 1574 species: Archae - 0; Bacteria - 5513; Metazoa - 241; Fungi - 153; Plants - 102; Viruses - 11; Other Eukaryotes - 5745 (source: NCBI BLink).  protein_id AT1G56350.1p  transcript_id AT1G56350.1  protein_id AT1G56350.1p  transcript_id AT1G56350.1  
At1g56360	chr1:021100687	0.0	C/21100687-21100842,21100066-21100284,21099854-21099965,21099541-21099767,21099318-21099456,21098892-21099234,21098603-21098807	AT1G56360.1  CDS  gene_syn ATPAP6, F14G9.2, F14G9_2, PAP6, PURPLE ACID PHOSPHATASE 6  gene PAP6  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function acid phosphatase activity|GO:0003993|16244908|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PAP6 (PURPLE ACID PHOSPHATASE 6); acid phosphatase/ protein serine/threonine phosphatase  note PURPLE ACID PHOSPHATASE 6 (PAP6); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Purple acid phosphatase, N-terminal (InterPro:IPR015914), Metallophosphoesterase (InterPro:IPR004843), Fibronectin, type III (InterPro:IPR003961), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: PAP25 (PURPLE ACID PHOSPHATASE 25); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT4G36350.1); Has 1247 Blast hits to 1233 proteins in 265 species: Archae - 3; Bacteria - 328; Metazoa - 171; Fungi - 60; Plants - 445; Viruses - 0; Other Eukaryotes - 240 (source: NCBI BLink).  protein_id AT1G56360.1p  transcript_id AT1G56360.1  protein_id AT1G56360.1p  transcript_id AT1G56360.1  
At1g56380	chr1:021101327	0.0	W/21101327-21101364,21101451-21102374,21102464-21102701	AT1G56380.2  CDS  gene_syn F14G9.1, F14G9_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial transcription termination factor family protein / mTERF family protein  note mitochondrial transcription termination factor family protein / mTERF family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: mitochondrial transcription termination factor family protein / mTERF family protein (TAIR:AT1G62110.1).  protein_id AT1G56380.2p  transcript_id AT1G56380.2  protein_id AT1G56380.2p  transcript_id AT1G56380.2  
At1g56380	chr1:021101374	0.0	W/21101374-21101378,21101451-21102374,21102464-21102701	AT1G56380.1  CDS  gene_syn F14G9.1, F14G9_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial transcription termination factor family protein / mTERF family protein  note mitochondrial transcription termination factor family protein / mTERF family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, fruit; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: mitochondrial transcription termination factor family protein / mTERF family protein (TAIR:AT1G62110.1); Has 343 Blast hits to 299 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 326; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G56380.1p  transcript_id AT1G56380.1  protein_id AT1G56380.1p  transcript_id AT1G56380.1  
At1g56385	chr1:021106315	0.0	C/21106315-21106773	AT1G56385.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: self-incompatibility protein-related (TAIR:AT3G57840.1); Has 26 Blast hits to 26 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G56385.1p  transcript_id AT1G56385.1  protein_id AT1G56385.1p  transcript_id AT1G56385.1  
At1g56390	chr1:021107988	0.0	W/21107988-21110752	AT1G56390.1  pseudogenic_transcript  pseudo  gene_syn F13N6.8  note pseudogene, calreticulin, similar to calreticulin GI:2052379 (Arabidopsis thaliana); blastp match of 85% identity and 8.6e-110 P-value to SP|Q40401|CRTC_NICPL Calreticulin precursor. (Leadwort-leaved tobacco) {Nicotiana plumbaginifolia}  
At1g56400	chr1:021112674	0.0	C/21112674-21113621,21112223-21112396,21111805-21112122	AT1G56400.1  CDS  gene_syn F13N6.18, F13N6_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G54820.1); Has 709 Blast hits to 696 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 708; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G56400.1p  transcript_id AT1G56400.1  protein_id AT1G56400.1p  transcript_id AT1G56400.1  
At1g56410	chr1:021117147	0.0	W/21117147-21117360,21117602-21119241	AT1G56410.1  CDS  gene_syn EARLY-RESPONSIVE TO DEHYDRATION 2, ERD2, F13N6.9, F13N6_9, HEAT SHOCK PROTEIN 70T-1, HSP70T-1  gene ERD2  function encodes a heat shock protein whose gene expression is induced by heat and dehydration.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ATP binding|GO:0005524||IEA  go_process protein folding|GO:0006457|11402207|TAS  go_process response to heat|GO:0009408|11402207|IEP  go_process response to water deprivation|GO:0009414|8075396|IEP  product ERD2 (EARLY-RESPONSIVE TO DEHYDRATION 2); ATP binding  note EARLY-RESPONSIVE TO DEHYDRATION 2 (ERD2); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to cadmium ion, response to water deprivation, response to heat; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: cotyledon, cultured cell; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1); ATP binding (TAIR:AT5G02500.1); Has 24765 Blast hits to 24618 proteins in 3132 species: Archae - 105; Bacteria - 9659; Metazoa - 3021; Fungi - 1153; Plants - 715; Viruses - 240; Other Eukaryotes - 9872 (source: NCBI BLink).  protein_id AT1G56410.1p  transcript_id AT1G56410.1  protein_id AT1G56410.1p  transcript_id AT1G56410.1  
At1g56415	chr1:021119895	0.0	W/21119895-21120057,21120159-21120280	AT1G56415.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Expressed protein  note Expressed protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G56415.1p  transcript_id AT1G56415.1  protein_id AT1G56415.1p  transcript_id AT1G56415.1  
At1g56418	chr1:021122071	0.0	W/21122071-21122179,21122318-21122448	AT1G56418.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G56418.1p  transcript_id AT1G56418.1  protein_id AT1G56418.1p  transcript_id AT1G56418.1  
At1g56420	chr1:021124127	0.0	C/21124127-21124234,21123927-21124042,21122772-21123099	AT1G56420.1  CDS  gene_syn F13N6.17, F13N6_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12530.1); Has 31 Blast hits to 31 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G56420.1p  transcript_id AT1G56420.1  protein_id AT1G56420.1p  transcript_id AT1G56420.1  
At1g56423	chr1:021129075	0.0	W/21129075-21129144,21129816-21130558	AT1G56423.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 111 Blast hits to 45 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 76; Fungi - 0; Plants - 16; Viruses - 2; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G56423.1p  transcript_id AT1G56423.1  protein_id AT1G56423.1p  transcript_id AT1G56423.1  
At1g56430	chr1:021137023	0.0	W/21137023-21137997	AT1G56430.1  CDS  gene_syn ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, ATNAS4, F13N6.10, F13N6_10, NAS4, NICOTIANAMINE SYNTHASE 4  gene NAS4  go_process nicotianamine biosynthetic process|GO:0030418||IEA  go_function nicotianamine synthase activity|GO:0030410||IEA  go_component cellular_component|GO:0005575||ND  product NAS4 (NICOTIANAMINE SYNTHASE 4); nicotianamine synthase  note NICOTIANAMINE SYNTHASE 4 (NAS4); FUNCTIONS IN: nicotianamine synthase activity; INVOLVED IN: nicotianamine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Nicotianamine synthase (InterPro:IPR004298); BEST Arabidopsis thaliana protein match is: NAS3 (NICOTIANAMINE SYNTHASE 3); nicotianamine synthase (TAIR:AT1G09240.1); Has 130 Blast hits to 128 proteins in 32 species: Archae - 8; Bacteria - 4; Metazoa - 0; Fungi - 17; Plants - 99; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G56430.1p  transcript_id AT1G56430.1  protein_id AT1G56430.1p  transcript_id AT1G56430.1  
At1g56440	chr1:021141441	0.0	C/21141441-21141482,21141102-21141200,21140888-21141016,21140679-21140803,21140426-21140547,21140239-21140321,21139938-21140150,21139614-21139751,21139337-21139519,21139164-21139258,21138985-21139082,21138765-21138868	AT1G56440.1  CDS  gene_syn F13N6.2, F13N6_2  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product serine/threonine protein phosphatase-related  note serine/threonine protein phosphatase-related; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: atToc64-III (Arabidopsis thaliana translocon at the outer membrane of chloroplasts 64-III); binding / carbon-nitrogen ligase, with glutamine as amido-N-donor (TAIR:AT3G17970.1); Has 9463 Blast hits to 7185 proteins in 478 species: Archae - 219; Bacteria - 1810; Metazoa - 3127; Fungi - 835; Plants - 1006; Viruses - 0; Other Eukaryotes - 2466 (source: NCBI BLink).  protein_id AT1G56440.1p  transcript_id AT1G56440.1  protein_id AT1G56440.1p  transcript_id AT1G56440.1  
At1g56450	chr1:021141970	0.0	W/21141970-21141978,21142089-21142153,21142257-21142333,21143313-21143442,21143528-21143687,21143771-21143956,21144073-21144186	AT1G56450.1  CDS  gene_syn F13N6.3, F13N6_3, PBG1, PROTEASOME BETA SUBUNIT PBG1  gene PBG1  function 20S proteasome beta subunit PBG1 (PBG1) mRNA, complete cds  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function threonine-type endopeptidase activity|GO:0004298||IEA  go_component proteasome core complex|GO:0005839|9373170|TAS  go_component proteasome core complex|GO:0005839|9611183|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_function peptidase activity|GO:0008233||ISS  product PBG1; peptidase/ threonine-type endopeptidase  note PBG1; FUNCTIONS IN: peptidase activity, threonine-type endopeptidase activity; INVOLVED IN: response to cadmium ion, response to salt stress, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, cytosolic ribosome; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Proteasome endopeptidase complex, beta subunit (InterPro:IPR016295), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: PBA1; endopeptidase/ peptidase/ threonine-type endopeptidase (TAIR:AT4G31300.2); Has 1649 Blast hits to 1649 proteins in 281 species: Archae - 301; Bacteria - 11; Metazoa - 460; Fungi - 384; Plants - 162; Viruses - 0; Other Eukaryotes - 331 (source: NCBI BLink).  protein_id AT1G56450.1p  transcript_id AT1G56450.1  protein_id AT1G56450.1p  transcript_id AT1G56450.1  
At1g56460	chr1:021146765	0.0	W/21146765-21146905,21147399-21147740,21147885-21148470,21148719-21148819,21148898-21148987,21149119-21149246,21149348-21149468	AT1G56460.1  CDS  gene_syn F13N6.4, F13N6_4  go_component chloroplast|GO:0009507||IEA  go_function protein binding|GO:0005515||ISS  product PAPA-1-like family protein / zinc finger (HIT type) family protein  note PAPA-1-like family protein / zinc finger (HIT type) family protein; FUNCTIONS IN: protein binding; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529), PAPA-1-like conserved region (InterPro:IPR006880); BEST Arabidopsis thaliana protein match is: PAPA-1-like family protein / zinc finger (HIT type) family protein (TAIR:AT2G47350.1); Has 6344 Blast hits to 4558 proteins in 417 species: Archae - 6; Bacteria - 427; Metazoa - 2467; Fungi - 794; Plants - 231; Viruses - 26; Other Eukaryotes - 2393 (source: NCBI BLink).  protein_id AT1G56460.1p  transcript_id AT1G56460.1  protein_id AT1G56460.1p  transcript_id AT1G56460.1  
At1g56470	chr1:021149706	0.0	W/21149706-21150153	AT1G56470.1  pseudogenic_transcript  pseudo  gene_syn F13N6.11  note pseudogene, disease resistance protein (fragment), blastp match of 58% identity and 1.1e-16 P-value to GP|15787901|gb|AAL07542.1||AF316412 resistance gene analog NBS7 {Helianthus annuus}  
At1g56480	chr1:021150293	0.0	C/21150293-21152844	AT1G56480.1  pseudogenic_transcript  pseudo  gene_syn F13N6.15  note pseudogene, pectinesterase, blastp match of 65% identity and 9.5e-47 P-value to GP|14495216|dbj|BAB60935.1||AP003578 putative pectin methylesterase {Oryza sativa (japonica cultivar-group)}  
At1g56490	chr1:021155295	0.0	C/21155295-21157567	AT1G56490.1  pseudogenic_transcript  pseudo  gene_syn F13N6.14  note pseudogene, pectinesterase, blastp match of 38% identity and 1.5e-56 P-value to GP|14495216|dbj|BAB60935.1||AP003578 putative pectin methylesterase {Oryza sativa (japonica cultivar-group)}  
At1g56500	chr1:021159775	0.0	W/21159775-21160129,21160208-21160308,21160437-21160493,21160572-21160666,21160862-21160961,21161314-21161372,21161627-21161751,21161977-21162034,21162372-21162459,21162535-21162613,21162844-21162895,21163097-21163172,21163417-21163527,21163616-21163711,21164039-21164161,21164334-21164531,21164608-21164712,21164792-21164856,21164946-21165039,21165179-21165336,21165418-21165467,21165542-21165663,21165731-21165838,21166056-21166148,21166245-21166281,21166360-21166610,21166703-21166852,21166931-21167092	AT1G56500.1  CDS  gene_syn AT1G56505, F13N6.21, F13N6_21  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process metabolic process|GO:0008152||IEA  go_process cell redox homeostasis|GO:0045454||IEA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function hydrolase activity|GO:0016787||IEA  go_function hydrolase activity|GO:0016787||ISS  product haloacid dehalogenase-like hydrolase family protein  note haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity, oxidoreductase activity, catalytic activity; INVOLVED IN: metabolic process, cell redox homeostasis; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehydrogenase/epoxide hydrolase (InterPro:IPR005833), Low-density lipoprotein receptor, YWTD repeat (InterPro:IPR000033), Thioredoxin fold (InterPro:IPR012335), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Thioredoxin-like (InterPro:IPR017936), NHL repeat (InterPro:IPR001258), Thioredoxin-like fold (InterPro:IPR012336), Redoxin (InterPro:IPR013740), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: emb1974 (embryo defective 1974) (TAIR:AT3G07060.1); Has 13361 Blast hits to 11787 proteins in 1390 species: Archae - 251; Bacteria - 8769; Metazoa - 891; Fungi - 204; Plants - 381; Viruses - 3; Other Eukaryotes - 2862 (source: NCBI BLink).  protein_id AT1G56500.1p  transcript_id AT1G56500.1  protein_id AT1G56500.1p  transcript_id AT1G56500.1  
At1g56510	chr1:021167704	0.0	W/21167704-21168173,21169503-21170595,21170697-21170996,21171100-21172260	AT1G56510.1  CDS  gene_syn F13N6.5, F13N6_5, WHITE RUST RESISTANCE 4, WRR4  gene WRR4  function TIR-NB-LRR protein that confers resistance to four races of Albugo candida.  go_component intrinsic to membrane|GO:0031224||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  go_process defense response to fungus, incompatible interaction|GO:0009817|18624640|IMP  product WRR4 (WHITE RUST RESISTANCE 4); ATP binding / nucleoside-triphosphatase/ nucleotide binding / transmembrane receptor  note WHITE RUST RESISTANCE 4 (WRR4); FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT1G56540.1); Has 13836 Blast hits to 10941 proteins in 425 species: Archae - 14; Bacteria - 642; Metazoa - 1114; Fungi - 51; Plants - 11579; Viruses - 8; Other Eukaryotes - 428 (source: NCBI BLink).  protein_id AT1G56510.1p  transcript_id AT1G56510.1  protein_id AT1G56510.1p  transcript_id AT1G56510.1  
At1g56520	chr1:021178451	0.0	C/21178451-21178920,21176921-21178025,21176531-21176821,21175614-21176441	AT1G56520.1  CDS  gene_syn F25P12.102, F25P12_102  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: WRR4 (WHITE RUST RESISTANCE 4); ATP binding / nucleoside-triphosphatase/ nucleotide binding / transmembrane receptor (TAIR:AT1G56510.1); Has 12011 Blast hits to 9117 proteins in 377 species: Archae - 12; Bacteria - 718; Metazoa - 1018; Fungi - 39; Plants - 9858; Viruses - 16; Other Eukaryotes - 350 (source: NCBI BLink).  protein_id AT1G56520.1p  transcript_id AT1G56520.1  protein_id AT1G56520.1p  transcript_id AT1G56520.1  
At1g56530	chr1:021179237	0.0	W/21179237-21179304,21180399-21180888	AT1G56530.1  CDS  gene_syn F25P12.22, F25P12_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 31364 Blast hits to 17746 proteins in 957 species: Archae - 50; Bacteria - 4256; Metazoa - 11545; Fungi - 4152; Plants - 5576; Viruses - 1222; Other Eukaryotes - 4563 (source: NCBI BLink).  protein_id AT1G56530.1p  transcript_id AT1G56530.1  protein_id AT1G56530.1p  transcript_id AT1G56530.1  
At1g56540	chr1:021181664	0.0	W/21181664-21182139,21182265-21183360,21183454-21183750,21183885-21185306	AT1G56540.1  CDS  gene_syn F25P12.101, F25P12_101  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: WRR4 (WHITE RUST RESISTANCE 4); ATP binding / nucleoside-triphosphatase/ nucleotide binding / transmembrane receptor (TAIR:AT1G56510.1); Has 12819 Blast hits to 10159 proteins in 452 species: Archae - 16; Bacteria - 705; Metazoa - 789; Fungi - 45; Plants - 10902; Viruses - 4; Other Eukaryotes - 358 (source: NCBI BLink).  protein_id AT1G56540.1p  transcript_id AT1G56540.1  protein_id AT1G56540.1p  transcript_id AT1G56540.1  
At1g56550	chr1:021187612	0.0	C/21187612-21188070,21186807-21186968,21186503-21186724,21186033-21186241,21185836-21185935	AT1G56550.1  CDS  gene_syn F25P12.100, F25P12_100  go_component endoplasmic reticulum|GO:0005783||IEA  go_process biological_process|GO:0008150||ND  go_function UDP-xylosyltransferase activity|GO:0035252|18755189|IEP  product UDP-xylosyltransferase  note UDP-xylosyltransferase; FUNCTIONS IN: UDP-xylosyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: fruit distal end, rosette leaf, cauline leaf, fruit proximal end, socket cell; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01220.1); Has 188 Blast hits to 185 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 166; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT1G56550.1p  transcript_id AT1G56550.1  protein_id AT1G56550.1p  transcript_id AT1G56550.1  
At1g56553	chr1:021189722	0.0	W/21189722-21189809,21189923-21190089	AT1G56553.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 18 Blast hits to 18 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G56553.1p  transcript_id AT1G56553.1  protein_id AT1G56553.1p  transcript_id AT1G56553.1  
At1g56555	chr1:021192165	0.0	C/21192165-21192217,21191953-21192079,21191121-21191474	AT1G56555.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G56555.1p  transcript_id AT1G56555.1  protein_id AT1G56555.1p  transcript_id AT1G56555.1  
At1g56560	chr1:021192593	0.0	W/21192593-21193198,21193288-21193447,21193523-21193734,21193828-21194321,21194442-21194490,21194619-21194948	AT1G56560.1  CDS  gene_syn F25P12.99, F25P12_99  go_function catalytic activity|GO:0003824||IEA  go_process biological_process|GO:0008150||ND  go_function beta-fructofuranosidase activity|GO:0004564||ISS  product beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative  note beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative; FUNCTIONS IN: catalytic activity, beta-fructofuranosidase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Plant neutral invertase (InterPro:IPR006937), Six-hairpin glycosidase-like (InterPro:IPR008928); BEST Arabidopsis thaliana protein match is: beta-fructofuranosidase/ catalytic (TAIR:AT3G05820.1); Has 514 Blast hits to 513 proteins in 76 species: Archae - 0; Bacteria - 101; Metazoa - 0; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 240 (source: NCBI BLink).  protein_id AT1G56560.1p  transcript_id AT1G56560.1  protein_id AT1G56560.1p  transcript_id AT1G56560.1  
At1g56570	chr1:021195804	0.0	W/21195804-21196421,21196504-21197721	AT1G56570.1  CDS  gene_syn F25P12.98, F25P12_98  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 14788 Blast hits to 5049 proteins in 166 species: Archae - 0; Bacteria - 6; Metazoa - 106; Fungi - 48; Plants - 14357; Viruses - 0; Other Eukaryotes - 271 (source: NCBI BLink).  protein_id AT1G56570.1p  transcript_id AT1G56570.1  protein_id AT1G56570.1p  transcript_id AT1G56570.1  
At1g56580	chr1:021198402	0.0	C/21198402-21198902	AT1G56580.1  CDS  gene_syn F25P12.97, F25P12_97  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09310.1); Has 167 Blast hits to 165 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G56580.1p  transcript_id AT1G56580.1  protein_id AT1G56580.1p  transcript_id AT1G56580.1  
At1g56590	chr1:021204663	0.0	C/21204663-21204697,21204462-21204561,21204173-21204283,21204015-21204104,21203173-21203420,21202871-21203080,21202580-21202787,21202250-21202495	AT1G56590.1  CDS  gene_syn F25P12.96, F25P12_96  go_component clathrin adaptor complex|GO:0030131||IEA  go_process transport|GO:0006810||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function protein binding|GO:0005515||IEA  go_component clathrin vesicle coat|GO:0030125||ISS  go_process intracellular protein transport|GO:0006886||ISS  product clathrin adaptor complexes medium subunit family protein  note clathrin adaptor complexes medium subunit family protein; FUNCTIONS IN: protein binding; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport; LOCATED IN: clathrin vesicle coat, clathrin adaptor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, conserved site (InterPro:IPR018240), Clathrin adaptor, mu subunit (InterPro:IPR001392), Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: HAP13 (HAPLESS 13); protein binding (TAIR:AT1G60780.1); Has 1451 Blast hits to 1434 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 782; Fungi - 300; Plants - 105; Viruses - 0; Other Eukaryotes - 264 (source: NCBI BLink).  protein_id AT1G56590.1p  transcript_id AT1G56590.1  protein_id AT1G56590.1p  transcript_id AT1G56590.1  
At1g56600	chr1:021207620	0.0	W/21207620-21207943,21208153-21208476,21208574-21208725,21209084-21209291	AT1G56600.1  CDS  gene_syn Arabidopsis thaliana galactinol synthase 2, AtGolS2, F25P12.95, F25P12_95  gene AtGolS2  go_component cellular_component|GO:0005575||ND  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product AtGolS2 (Arabidopsis thaliana galactinol synthase 2); transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note Arabidopsis thaliana galactinol synthase 2 (AtGolS2); FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, inflorescence meristem, cauline leaf, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: AtGolS3 (Arabidopsis thaliana galactinol synthase 3); transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT1G09350.1); Has 877 Blast hits to 876 proteins in 203 species: Archae - 0; Bacteria - 66; Metazoa - 223; Fungi - 192; Plants - 273; Viruses - 70; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT1G56600.1p  transcript_id AT1G56600.1  protein_id AT1G56600.1p  transcript_id AT1G56600.1  
At1g56605	chr1:021210482	0.0	W/21210482-21211008	AT1G56605.1  mRNA_TE_gene  pseudo  gene_syn F25P12.108  note Transposable element gene, pseudogene, hypothetical protein  
At1g56610	chr1:021212189	0.0	W/21212189-21213316,21213400-21213543,21213625-21213960	AT1G56610.1  CDS  gene_syn F25P12.94, F25P12_94  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product syntaxin-related family protein  note syntaxin-related family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14096.1); Has 624 Blast hits to 612 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 624; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G56610.1p  transcript_id AT1G56610.1  protein_id AT1G56610.1p  transcript_id AT1G56610.1  
At1g56610	chr1:021212378	0.0	W/21212378-21213316,21213400-21213543,21213625-21213960	AT1G56610.2  CDS  gene_syn F25P12.94, F25P12_94  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product syntaxin-related family protein  note syntaxin-related family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14096.1); Has 624 Blast hits to 612 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 624; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G56610.2p  transcript_id AT1G56610.2  protein_id AT1G56610.2p  transcript_id AT1G56610.2  
At1g56612	chr1:021214118	0.0	C/21214118-21214944	AT1G56612.3  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G56610  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G56612.3  
At1g56612	chr1:021214146	0.0	C/21214146-21215406	AT1G56612.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G56610  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G56612.2  
At1g56612	chr1:021214158	0.0	C/21214158-21215389	AT1G56612.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G56610  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G56612.1  
At1g56620	chr1:021219818	0.0	W/21219818-21220357	AT1G56620.1  CDS  gene_syn F25P12.14, F25P12_14  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  product pectinesterase inhibitor domain-containing protein  note pectinesterase inhibitor domain-containing protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT5G24370.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G56620.1p  transcript_id AT1G56620.1  protein_id AT1G56620.1p  transcript_id AT1G56620.1  
At1g56630	chr1:021226640	0.0	C/21226640-21226943,21225876-21226075,21225557-21225590,21224776-21224911,21224165-21224648,21223593-21223892	AT1G56630.1  CDS  gene_syn F25P12.93, F25P12_93  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_component cellular_component|GO:0005575||ND  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product triacylglycerol lipase  note triacylglycerol lipase; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: triacylglycerol lipase (TAIR:AT5G42930.1); Has 260 Blast hits to 216 proteins in 49 species: Archae - 0; Bacteria - 42; Metazoa - 2; Fungi - 9; Plants - 132; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT1G56630.1p  transcript_id AT1G56630.1  protein_id AT1G56630.1p  transcript_id AT1G56630.1  
At1g56640	chr1:021229999	0.0	C/21229999-21230469	AT1G56640.1  pseudogenic_transcript  pseudo  gene_syn F25P12.24  note pseudogene, similar to An2 truncated protein, blastp match of 70% identity and 7.4e-11 P-value to GP|7673092|gb|AAF66731.1|AF146706_1|AF146706 An2 truncated protein {Petunia x hybrida}  
At1g56650	chr1:021234969	0.0	C/21234969-21235089,21234299-21234428,21233714-21234209	AT1G56650.1  CDS  gene_syn ATMYB75, F25P12.92, F25P12_92, MYB DOMAIN PROTEIN 75, MYB75, MYELOBLASTOSIS PROTEIN 75, PAP1, PHOSPHATIDIC ACID PHOSPHATASE 1, PRODUCTION OF ANTHOCYANIN PIGMENT 1, SIAA1, SUC-INDUCED ANTHOCYANIN ACCUMULATION 1  gene PAP1  function Encodes a putative MYB domain containing transcription factor involved in anthocyanin metabolism and radical scavenging. Essential for the sucrose-mediated expression of the dihydroflavonol reductase gene.  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process anthocyanin biosynthetic process|GO:0009718|16299184|IMP  go_process sucrose mediated signaling|GO:0009745|16299184|IMP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process removal of superoxide radicals|GO:0019430|15834789|IMP  go_process regulation of anthocyanin biosynthetic process|GO:0031540|18036197|IMP  go_process anthocyanin metabolic process|GO:0046283||IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|15807784|TAS  product PAP1 (PRODUCTION OF ANTHOCYANIN PIGMENT 1); DNA binding / transcription factor  note PRODUCTION OF ANTHOCYANIN PIGMENT 1 (PAP1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 8 processes; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB90 (MYB DOMAIN PROTEIN 90); DNA binding / transcription factor (TAIR:AT1G66390.1); Has 6078 Blast hits to 5721 proteins in 363 species: Archae - 0; Bacteria - 0; Metazoa - 595; Fungi - 298; Plants - 3731; Viruses - 3; Other Eukaryotes - 1451 (source: NCBI BLink).  protein_id AT1G56650.1p  transcript_id AT1G56650.1  protein_id AT1G56650.1p  transcript_id AT1G56650.1  
At1g56660	chr1:021238809	0.0	W/21238809-21240377	AT1G56660.1  CDS  gene_syn F25P12.91, F25P12_91  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; Has 553849 Blast hits to 156892 proteins in 3110 species: Archae - 2183; Bacteria - 59979; Metazoa - 236712; Fungi - 59029; Plants - 23920; Viruses - 2741; Other Eukaryotes - 169285 (source: NCBI BLink).  protein_id AT1G56660.1p  transcript_id AT1G56660.1  protein_id AT1G56660.1p  transcript_id AT1G56660.1  
At1g56670	chr1:021241688	0.0	W/21241688-21241952,21242862-21243053,21243145-21243311,21243387-21243651,21243733-21243965	AT1G56670.1  CDS  gene_syn F25P12.90, F25P12_90  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT1G09390.1); Has 1769 Blast hits to 1748 proteins in 145 species: Archae - 0; Bacteria - 178; Metazoa - 1; Fungi - 31; Plants - 1546; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G56670.1p  transcript_id AT1G56670.1  protein_id AT1G56670.1p  transcript_id AT1G56670.1  
At1g56675	chr1:021244466	0.0	C/21244466-21248926	AT1G56675.1  mRNA_TE_gene  pseudo  gene_syn F25P12.89, F25P12_89  note Transposable element gene, copia-like retrotransposon family, has a 1.7e-196 P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At1g56680	chr1:021250979	0.0	C/21250979-21251417,21250428-21250831	AT1G56680.1  CDS  gene_syn F25P12.88, F25P12_88  go_component endomembrane system|GO:0012505||IEA  go_process cell wall macromolecule catabolic process|GO:0016998||IEA  go_function chitinase activity|GO:0004568||IEA  go_function chitinase activity|GO:0004568||ISS  product glycoside hydrolase family 19 protein  note glycoside hydrolase family 19 protein; FUNCTIONS IN: chitinase activity; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, sepal, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 19 (InterPro:IPR016283), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 19 protein (TAIR:AT2G43600.1); Has 1299 Blast hits to 1290 proteins in 284 species: Archae - 0; Bacteria - 268; Metazoa - 15; Fungi - 6; Plants - 982; Viruses - 3; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT1G56680.1p  transcript_id AT1G56680.1  protein_id AT1G56680.1p  transcript_id AT1G56680.1  
At1g56690	chr1:021253817	0.0	W/21253817-21255931	AT1G56690.1  CDS  gene_syn F25P12.87, F25P12_87  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G09410.1); Has 17945 Blast hits to 5242 proteins in 159 species: Archae - 0; Bacteria - 4; Metazoa - 31; Fungi - 79; Plants - 17506; Viruses - 0; Other Eukaryotes - 325 (source: NCBI BLink).  protein_id AT1G56690.1p  transcript_id AT1G56690.1  protein_id AT1G56690.1p  transcript_id AT1G56690.1  
At1g56700	chr1:021256743	0.0	W/21256743-21257006,21257092-21257196,21257273-21257320,21257398-21257640	AT1G56700.1  CDS  gene_syn F25P12.86, F25P12_86  go_process proteolysis|GO:0006508||IEA  go_component cellular_component|GO:0005575||ND  go_process proteolysis|GO:0006508||ISS  product pyrrolidone-carboxylate peptidase family protein  note pyrrolidone-carboxylate peptidase family protein; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C15, pyroglutamyl peptidase I (InterPro:IPR000816), Peptidase C15, pyroglutamyl peptidase I-like (InterPro:IPR016125); BEST Arabidopsis thaliana protein match is: pyrrolidone-carboxylate peptidase family protein (TAIR:AT1G23440.1); Has 985 Blast hits to 984 proteins in 394 species: Archae - 76; Bacteria - 671; Metazoa - 93; Fungi - 10; Plants - 59; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT1G56700.1p  transcript_id AT1G56700.1  protein_id AT1G56700.1p  transcript_id AT1G56700.1  
At1g56700	chr1:021256743	0.0	W/21256743-21257006,21257092-21257196,21257273-21257320,21257398-21257640	AT1G56700.2  CDS  gene_syn F25P12.86, F25P12_86  go_process proteolysis|GO:0006508||IEA  go_component cellular_component|GO:0005575||ND  go_process proteolysis|GO:0006508||ISS  product pyrrolidone-carboxylate peptidase family protein  note pyrrolidone-carboxylate peptidase family protein; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C15, pyroglutamyl peptidase I (InterPro:IPR000816), Peptidase C15, pyroglutamyl peptidase I-like (InterPro:IPR016125); BEST Arabidopsis thaliana protein match is: pyrrolidone-carboxylate peptidase family protein (TAIR:AT1G23440.1); Has 985 Blast hits to 984 proteins in 394 species: Archae - 76; Bacteria - 671; Metazoa - 93; Fungi - 10; Plants - 59; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT1G56700.2p  transcript_id AT1G56700.2  protein_id AT1G56700.2p  transcript_id AT1G56700.2  
At1g56700	chr1:021256830	0.0	W/21256830-21257006,21257092-21257196,21257273-21257320,21257398-21257640	AT1G56700.3  CDS  gene_syn F25P12.86, F25P12_86  go_process proteolysis|GO:0006508||IEA  go_component cellular_component|GO:0005575||ND  go_process proteolysis|GO:0006508||ISS  product pyrrolidone-carboxylate peptidase family protein  note pyrrolidone-carboxylate peptidase family protein; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C15, pyroglutamyl peptidase I (InterPro:IPR000816), Peptidase C15, pyroglutamyl peptidase I-like (InterPro:IPR016125); BEST Arabidopsis thaliana protein match is: pyrrolidone-carboxylate peptidase family protein (TAIR:AT1G23440.1); Has 917 Blast hits to 916 proteins in 362 species: Archae - 74; Bacteria - 630; Metazoa - 85; Fungi - 10; Plants - 59; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT1G56700.3p  transcript_id AT1G56700.3  protein_id AT1G56700.3p  transcript_id AT1G56700.3  
At1g56710	chr1:021259590	0.0	C/21259590-21259922,21259306-21259515,21259007-21259214,21258840-21258921,21258206-21258677	AT1G56710.1  CDS  gene_syn F25P12.85, F25P12_85  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: stem, leaf whorl, embryo, sepal, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT1G02460.1); Has 2453 Blast hits to 2445 proteins in 301 species: Archae - 2; Bacteria - 472; Metazoa - 8; Fungi - 992; Plants - 890; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT1G56710.1p  transcript_id AT1G56710.1  protein_id AT1G56710.1p  transcript_id AT1G56710.1  
At1g56720	chr1:021264922	0.0	C/21264922-21265559,21264743-21264847,21264542-21264664,21264299-21264469,21264092-21264221,21263809-21264021,21263630-21263728	AT1G56720.1  CDS  gene_syn F25P12.84, F25P12_84  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G09440.1); Has 87114 Blast hits to 86047 proteins in 3115 species: Archae - 54; Bacteria - 8095; Metazoa - 37986; Fungi - 6625; Plants - 18971; Viruses - 394; Other Eukaryotes - 14989 (source: NCBI BLink).  protein_id AT1G56720.1p  transcript_id AT1G56720.1  protein_id AT1G56720.1p  transcript_id AT1G56720.1  
At1g56720	chr1:021264922	0.0	C/21264922-21265559,21264743-21264847,21264542-21264664,21264299-21264469,21264092-21264221,21263809-21264021,21263630-21263728	AT1G56720.2  CDS  gene_syn F25P12.84, F25P12_84  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G09440.1); Has 87114 Blast hits to 86047 proteins in 3115 species: Archae - 54; Bacteria - 8095; Metazoa - 37986; Fungi - 6625; Plants - 18971; Viruses - 394; Other Eukaryotes - 14989 (source: NCBI BLink).  protein_id AT1G56720.2p  transcript_id AT1G56720.2  protein_id AT1G56720.2p  transcript_id AT1G56720.2  
At1g56720	chr1:021264922	0.0	C/21264922-21265559,21264743-21264847,21264542-21264664,21264299-21264469,21264092-21264221,21263809-21264021,21263630-21263728	AT1G56720.3  CDS  gene_syn F25P12.84, F25P12_84  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G09440.1); Has 87114 Blast hits to 86047 proteins in 3115 species: Archae - 54; Bacteria - 8095; Metazoa - 37986; Fungi - 6625; Plants - 18971; Viruses - 394; Other Eukaryotes - 14989 (source: NCBI BLink).  protein_id AT1G56720.3p  transcript_id AT1G56720.3  protein_id AT1G56720.3p  transcript_id AT1G56720.3  
At1g56730	chr1:021268787	0.0	W/21268787-21268868	AT1G56730.1  tRNA  gene_syn 68156.TRNA-SER-27  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT1G56730.1  
At1g56740	chr1:021269122	0.0	W/21269122-21269158	AT1G56740.1  tRNA  gene_syn 68156.TRNA-TYR-54  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G56740.1  
At1g56750	chr1:021269552	0.0	W/21269552-21269588	AT1G56750.1  tRNA  gene_syn 68156.TRNA-TYR-53  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G56750.1  
At1g56760	chr1:021270296	0.0	W/21270296-21270377	AT1G56760.1  tRNA  gene_syn 68156.TRNA-SER-26  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT1G56760.1  
At1g56770	chr1:021270631	0.0	W/21270631-21270667	AT1G56770.1  tRNA  gene_syn 68156.TRNA-TYR-52  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G56770.1  
At1g56780	chr1:021271061	0.0	W/21271061-21271097	AT1G56780.1  tRNA  gene_syn 68156.TRNA-TYR-51  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G56780.1  
At1g56790	chr1:021271805	0.0	W/21271805-21271886	AT1G56790.1  tRNA  gene_syn 68156.TRNA-SER-25  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT1G56790.1  
At1g56800	chr1:021272140	0.0	W/21272140-21272176	AT1G56800.1  tRNA  gene_syn 68156.TRNA-TYR-50  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G56800.1  
At1g56810	chr1:021272570	0.0	W/21272570-21272606	AT1G56810.1  tRNA  gene_syn 68156.TRNA-TYR-49  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G56810.1  
At1g56820	chr1:021273314	0.0	W/21273314-21273395	AT1G56820.1  tRNA  gene_syn 68156.TRNA-SER-24  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT1G56820.1  
At1g56830	chr1:021273649	0.0	W/21273649-21273685	AT1G56830.1  tRNA  gene_syn 68156.TRNA-TYR-48  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G56830.1  
At1g56840	chr1:021274079	0.0	W/21274079-21274115	AT1G56840.1  tRNA  gene_syn 68156.TRNA-TYR-47  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G56840.1  
At1g56850	chr1:021274823	0.0	W/21274823-21274904	AT1G56850.1  tRNA  gene_syn 68156.TRNA-SER-23  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT1G56850.1  
At1g56860	chr1:021275158	0.0	W/21275158-21275194	AT1G56860.1  tRNA  gene_syn 68156.TRNA-TYR-46  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G56860.1  
At1g56870	chr1:021275609	0.0	W/21275609-21275645	AT1G56870.1  tRNA  gene_syn 68156.TRNA-TYR-45  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G56870.1  
At1g56880	chr1:021276352	0.0	W/21276352-21276433	AT1G56880.1  tRNA  gene_syn 68156.TRNA-SER-22  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT1G56880.1  
At1g56890	chr1:021276687	0.0	W/21276687-21276723	AT1G56890.1  tRNA  gene_syn 68156.TRNA-TYR-44  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G56890.1  
At1g56900	chr1:021277117	0.0	W/21277117-21277153	AT1G56900.1  tRNA  gene_syn 68156.TRNA-TYR-43  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G56900.1  
At1g56910	chr1:021277861	0.0	W/21277861-21277942	AT1G56910.1  tRNA  gene_syn 68156.TRNA-SER-21  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT1G56910.1  
At1g56920	chr1:021278196	0.0	W/21278196-21278232	AT1G56920.1  tRNA  gene_syn 68156.TRNA-TYR-42  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G56920.1  
At1g56930	chr1:021278647	0.0	W/21278647-21278683	AT1G56930.1  tRNA  gene_syn 68156.TRNA-TYR-41  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G56930.1  
At1g56940	chr1:021279390	0.0	W/21279390-21279471	AT1G56940.1  tRNA  gene_syn 68156.TRNA-SER-20  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT1G56940.1  
At1g56950	chr1:021279720	0.0	W/21279720-21279756	AT1G56950.1  tRNA  gene_syn 68156.TRNA-TYR-40  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G56950.1  
At1g56960	chr1:021280178	0.0	W/21280178-21280214	AT1G56960.1  tRNA  gene_syn 68156.TRNA-TYR-39  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G56960.1  
At1g56970	chr1:021280922	0.0	W/21280922-21281003	AT1G56970.1  tRNA  gene_syn 68156.TRNA-SER-19  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT1G56970.1  
At1g56980	chr1:021281252	0.0	W/21281252-21281288	AT1G56980.1  tRNA  gene_syn 68156.TRNA-TYR-38  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G56980.1  
At1g56990	chr1:021281710	0.0	W/21281710-21281746	AT1G56990.1  tRNA  gene_syn 68156.TRNA-TYR-37  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G56990.1  
At1g57000	chr1:021282454	0.0	W/21282454-21282535	AT1G57000.1  tRNA  gene_syn 68156.TRNA-SER-18  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT1G57000.1  
At1g57010	chr1:021282784	0.0	W/21282784-21282820	AT1G57010.1  tRNA  gene_syn 68156.TRNA-TYR-36  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G57010.1  
At1g57020	chr1:021283242	0.0	W/21283242-21283278	AT1G57020.1  tRNA  gene_syn 68156.TRNA-TYR-35  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G57020.1  
At1g57030	chr1:021283986	0.0	W/21283986-21284067	AT1G57030.1  tRNA  gene_syn 68156.TRNA-SER-17  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT1G57030.1  
At1g57040	chr1:021284316	0.0	W/21284316-21284352	AT1G57040.1  tRNA  gene_syn 68156.TRNA-TYR-34  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G57040.1  
At1g57050	chr1:021284774	0.0	W/21284774-21284810	AT1G57050.1  tRNA  gene_syn 68156.TRNA-TYR-33  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G57050.1  
At1g57060	chr1:021285519	0.0	W/21285519-21285600	AT1G57060.1  tRNA  gene_syn 68156.TRNA-SER-16  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT1G57060.1  
At1g57070	chr1:021285849	0.0	W/21285849-21285885	AT1G57070.1  tRNA  gene_syn 68156.TRNA-TYR-32  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G57070.1  
At1g57080	chr1:021286306	0.0	W/21286306-21286342	AT1G57080.1  tRNA  gene_syn 68156.TRNA-TYR-31  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G57080.1  
At1g57090	chr1:021287050	0.0	W/21287050-21287131	AT1G57090.1  tRNA  gene_syn 68156.TRNA-SER-15  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT1G57090.1  
At1g57100	chr1:021287380	0.0	W/21287380-21287416	AT1G57100.1  tRNA  gene_syn 68156.TRNA-TYR-30  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G57100.1  
At1g57110	chr1:021287837	0.0	W/21287837-21287873	AT1G57110.1  tRNA  gene_syn 68156.TRNA-TYR-29  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G57110.1  
At1g57120	chr1:021288581	0.0	W/21288581-21288662	AT1G57120.1  tRNA  gene_syn 68156.TRNA-SER-14  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT1G57120.1  
At1g57130	chr1:021288910	0.0	W/21288910-21288946	AT1G57130.1  tRNA  gene_syn 68156.TRNA-TYR-28  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G57130.1  
At1g57140	chr1:021289368	0.0	W/21289368-21289404	AT1G57140.1  tRNA  gene_syn 68156.TRNA-TYR-27  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G57140.1  
At1g57150	chr1:021290112	0.0	W/21290112-21290193	AT1G57150.1  tRNA  gene_syn 68156.TRNA-SER-13  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT1G57150.1  
At1g57160	chr1:021290445	0.0	W/21290445-21290481	AT1G57160.1  tRNA  gene_syn 68156.TRNA-TYR-26  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G57160.1  
At1g57170	chr1:021290903	0.0	W/21290903-21290939	AT1G57170.1  tRNA  gene_syn 68156.TRNA-TYR-25  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G57170.1  
At1g57180	chr1:021291461	0.0	W/21291461-21291542	AT1G57180.1  tRNA  gene_syn 68156.TRNA-SER-12  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT1G57180.1  
At1g57190	chr1:021291791	0.0	W/21291791-21291827	AT1G57190.1  tRNA  gene_syn 68156.TRNA-TYR-24  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G57190.1  
At1g57200	chr1:021292248	0.0	W/21292248-21292284	AT1G57200.1  tRNA  gene_syn 68156.TRNA-TYR-23  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G57200.1  
At1g57210	chr1:021292992	0.0	W/21292992-21293073	AT1G57210.1  tRNA  gene_syn 68156.TRNA-SER-11  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT1G57210.1  
At1g57220	chr1:021293325	0.0	W/21293325-21293361	AT1G57220.1  tRNA  gene_syn 68156.TRNA-TYR-22  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G57220.1  
At1g57230	chr1:021293783	0.0	W/21293783-21293819	AT1G57230.1  tRNA  gene_syn 68156.TRNA-TYR-21  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G57230.1  
At1g57240	chr1:021294341	0.0	W/21294341-21294422	AT1G57240.1  tRNA  gene_syn 68156.TRNA-SER-10  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT1G57240.1  
At1g57250	chr1:021294671	0.0	W/21294671-21294707	AT1G57250.1  tRNA  gene_syn 68156.TRNA-TYR-20  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G57250.1  
At1g57260	chr1:021295128	0.0	W/21295128-21295164	AT1G57260.1  tRNA  gene_syn 68156.TRNA-TYR-19  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G57260.1  
At1g57270	chr1:021295872	0.0	W/21295872-21295953	AT1G57270.1  tRNA  gene_syn 68156.TRNA-SER-9  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT1G57270.1  
At1g57280	chr1:021296205	0.0	W/21296205-21296241	AT1G57280.1  tRNA  gene_syn 68156.TRNA-TYR-18  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G57280.1  
At1g57290	chr1:021296663	0.0	W/21296663-21296699	AT1G57290.1  tRNA  gene_syn 68156.TRNA-TYR-17  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G57290.1  
At1g57300	chr1:021297221	0.0	W/21297221-21297302	AT1G57300.1  tRNA  gene_syn 68156.TRNA-SER-8  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT1G57300.1  
At1g57310	chr1:021297551	0.0	W/21297551-21297587	AT1G57310.1  tRNA  gene_syn 68156.TRNA-TYR-16  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G57310.1  
At1g57320	chr1:021298009	0.0	W/21298009-21298045	AT1G57320.1  tRNA  gene_syn 68156.TRNA-TYR-15  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G57320.1  
At1g57330	chr1:021298753	0.0	W/21298753-21298834	AT1G57330.1  tRNA  gene_syn 68156.TRNA-SER-7  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT1G57330.1  
At1g57340	chr1:021299086	0.0	W/21299086-21299122	AT1G57340.1  tRNA  gene_syn 68156.TRNA-TYR-14  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G57340.1  
At1g57350	chr1:021299544	0.0	W/21299544-21299580	AT1G57350.1  tRNA  gene_syn 68156.TRNA-TYR-13  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G57350.1  
At1g57360	chr1:021300102	0.0	W/21300102-21300183	AT1G57360.1  tRNA  gene_syn 68156.TRNA-SER-6  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT1G57360.1  
At1g57370	chr1:021300432	0.0	W/21300432-21300468	AT1G57370.1  tRNA  gene_syn 68156.TRNA-TYR-12  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G57370.1  
At1g57380	chr1:021300890	0.0	W/21300890-21300926	AT1G57380.1  tRNA  gene_syn 68156.TRNA-TYR-11  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G57380.1  
At1g57390	chr1:021301634	0.0	W/21301634-21301715	AT1G57390.1  tRNA  gene_syn 68156.TRNA-SER-5  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT1G57390.1  
At1g57400	chr1:021301967	0.0	W/21301967-21302003	AT1G57400.1  tRNA  gene_syn 68156.TRNA-TYR-10  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G57400.1  
At1g57410	chr1:021302425	0.0	W/21302425-21302461	AT1G57410.1  tRNA  gene_syn 68156.TRNA-TYR-9  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G57410.1  
At1g57420	chr1:021302983	0.0	W/21302983-21303064	AT1G57420.1  tRNA  gene_syn 68156.TRNA-SER-4  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT1G57420.1  
At1g57430	chr1:021303317	0.0	W/21303317-21303353	AT1G57430.1  tRNA  gene_syn 68156.TRNA-TYR-8  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G57430.1  
At1g57440	chr1:021303777	0.0	W/21303777-21303813	AT1G57440.1  tRNA  gene_syn 68156.TRNA-TYR-7  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G57440.1  
At1g57450	chr1:021304520	0.0	W/21304520-21304603	AT1G57450.1  tRNA  gene_syn 68156.TRNA-SER-3  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT1G57450.1  
At1g57460	chr1:021304856	0.0	W/21304856-21304892	AT1G57460.1  tRNA  gene_syn 68156.TRNA-TYR-6  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G57460.1  
At1g57470	chr1:021305311	0.0	W/21305311-21305347	AT1G57470.1  tRNA  gene_syn 68156.TRNA-TYR-5  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G57470.1  
At1g57480	chr1:021306055	0.0	W/21306055-21306136	AT1G57480.1  tRNA  gene_syn 68156.TRNA-SER-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT1G57480.1  
At1g57490	chr1:021306389	0.0	W/21306389-21306425	AT1G57490.1  tRNA  gene_syn 68156.TRNA-TYR-4  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G57490.1  
At1g57500	chr1:021306849	0.0	W/21306849-21306885	AT1G57500.1  tRNA  gene_syn 68156.TRNA-TYR-3  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G57500.1  
At1g57510	chr1:021307592	0.0	W/21307592-21307675	AT1G57510.1  tRNA  gene_syn 68156.TRNA-SER-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT1G57510.1  
At1g57520	chr1:021307928	0.0	W/21307928-21307964	AT1G57520.1  tRNA  gene_syn 68156.TRNA-TYR-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G57520.1  
At1g57530	chr1:021308387	0.0	W/21308387-21308423	AT1G57530.1  tRNA  gene_syn 68156.TRNA-TYR-1  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT1G57530.1  
At1g57540	chr1:021311068	0.0	C/21311068-21311215,21310478-21310641	AT1G57540.1  CDS  gene_syn F25P12.4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 15 Blast hits to 15 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G57540.1p  transcript_id AT1G57540.1  protein_id AT1G57540.1p  transcript_id AT1G57540.1  
At1g57540	chr1:021311068	0.0	C/21311068-21311215,21310478-21310641	AT1G57540.2  CDS  gene_syn F25P12.4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 15 Blast hits to 15 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G57540.2p  transcript_id AT1G57540.2  protein_id AT1G57540.2p  transcript_id AT1G57540.2  
At1g57540	chr1:021311068	0.0	C/21311068-21311215,21310478-21310641	AT1G57540.3  CDS  gene_syn F25P12.4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 15 Blast hits to 15 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G57540.3p  transcript_id AT1G57540.3  protein_id AT1G57540.3p  transcript_id AT1G57540.3  
At1g57550	chr1:021312735	0.0	C/21312735-21312809,21312541-21312624	AT1G57550.1  CDS  gene_syn F25P12.2, F25P12_2  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process response to cold|GO:0009409||ISS  go_process hyperosmotic salinity response|GO:0042538||ISS  product hydrophobic protein, putative / low temperature and salt responsive protein, putative  note hydrophobic protein, putative / low temperature and salt responsive protein, putative; INVOLVED IN: hyperosmotic salinity response, response to cold; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0057 (InterPro:IPR000612); BEST Arabidopsis thaliana protein match is: hydrophobic protein, putative / low temperature and salt responsive protein, putative (TAIR:AT2G38905.1); Has 815 Blast hits to 815 proteins in 317 species: Archae - 0; Bacteria - 462; Metazoa - 29; Fungi - 118; Plants - 183; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G57550.1p  transcript_id AT1G57550.1  protein_id AT1G57550.1p  transcript_id AT1G57550.1  
At1g57560	chr1:021316851	0.0	W/21316851-21316983,21317072-21317201,21317278-21317959	AT1G57560.1  CDS  gene_syn AtMYB50, T8L23.3, T8L23_3, myb domain protein 50  gene AtMYB50  function Member of the R2R3 factor gene family.  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product AtMYB50 (myb domain protein 50); DNA binding / transcription factor  note myb domain protein 50 (AtMYB50); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to jasmonic acid stimulus, response to auxin stimulus, response to gibberellin stimulus, regulation of transcription, DNA-dependent, response to salicylic acid stimulus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB61 (MYB DOMAIN PROTEIN 61); DNA binding / transcription factor (TAIR:AT1G09540.1); Has 6311 Blast hits to 5840 proteins in 352 species: Archae - 0; Bacteria - 0; Metazoa - 639; Fungi - 296; Plants - 3760; Viruses - 6; Other Eukaryotes - 1610 (source: NCBI BLink).  protein_id AT1G57560.1p  transcript_id AT1G57560.1  protein_id AT1G57560.1p  transcript_id AT1G57560.1  
At1g57565	chr1:021319635	0.0	W/21319635-21320213	AT1G57565.1  CDS  gene_syn T8L23.24, T8L23_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G57580.1); Has 32 Blast hits to 30 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G57565.1p  transcript_id AT1G57565.1  protein_id AT1G57565.1p  transcript_id AT1G57565.1  
At1g57570	chr1:021321717	0.0	W/21321717-21321785,21322138-21322341,21322442-21322879,21322965-21323396,21323488-21323937,21324033-21324284	AT1G57570.1  CDS  gene_syn T8L23.4, T8L23_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product jacalin lectin family protein  note jacalin lectin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61230.1); Has 1312 Blast hits to 448 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1312; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G57570.1p  transcript_id AT1G57570.1  protein_id AT1G57570.1p  transcript_id AT1G57570.1  
At1g57580	chr1:021325079	0.0	W/21325079-21325552,21325686-21326252	AT1G57580.1  CDS  gene_syn T8L23.5, T8L23_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G57565.1); Has 35 Blast hits to 32 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G57580.1p  transcript_id AT1G57580.1  protein_id AT1G57580.1p  transcript_id AT1G57580.1  
At1g57590	chr1:021329428	0.0	C/21329428-21329707,21329269-21329351,21329057-21329186,21328897-21328970,21328605-21328816,21328453-21328513,21328322-21328375,21328157-21328234,21327978-21328083,21327729-21327874,21327458-21327568	AT1G57590.1  CDS  gene_syn T8L23.6, T8L23_6  go_process biological_process|GO:0008150||ND  go_function carboxylesterase activity|GO:0004091||ISS  product carboxylesterase  note carboxylesterase; FUNCTIONS IN: carboxylesterase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinacetylesterase (InterPro:IPR004963); BEST Arabidopsis thaliana protein match is: pectinacetylesterase, putative (TAIR:AT5G26670.1); Has 391 Blast hits to 385 proteins in 74 species: Archae - 0; Bacteria - 30; Metazoa - 115; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT1G57590.1p  transcript_id AT1G57590.1  protein_id AT1G57590.1p  transcript_id AT1G57590.1  
At1g57600	chr1:021334479	0.0	C/21334479-21334596,21334338-21334396,21334077-21334258,21333925-21333973,21333689-21333792,21333527-21333591,21333362-21333432,21333184-21333243,21332988-21333101,21332677-21332801,21332534-21332585,21332306-21332368,21331930-21332039,21331732-21331824,21331560-21331641,21331186-21331263,21331024-21331099,21330884-21330933,21330729-21330779	AT1G57600.1  CDS  gene_syn T8L23.7, T8L23_7  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function acyltransferase activity|GO:0008415||ISS  product membrane bound O-acyl transferase (MBOAT) family protein  note membrane bound O-acyl transferase (MBOAT) family protein; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Membrane bound O-acyl transferase, MBOAT (InterPro:IPR004299); Has 1431 Blast hits to 1426 proteins in 408 species: Archae - 0; Bacteria - 839; Metazoa - 186; Fungi - 100; Plants - 19; Viruses - 0; Other Eukaryotes - 287 (source: NCBI BLink).  protein_id AT1G57600.1p  transcript_id AT1G57600.1  protein_id AT1G57600.1p  transcript_id AT1G57600.1  
At1g57610	chr1:021338044	0.0	C/21338044-21338412,21337449-21337961	AT1G57610.1  CDS  gene_syn T8L23.8, T8L23_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF607 (InterPro:IPR006769); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09575.1); Has 280 Blast hits to 278 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 41; Plants - 69; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT1G57610.1p  transcript_id AT1G57610.1  protein_id AT1G57610.1p  transcript_id AT1G57610.1  
At1g57610	chr1:021338044	0.0	C/21338044-21338412,21337449-21337961	AT1G57610.2  CDS  gene_syn T8L23.8, T8L23_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF607 (InterPro:IPR006769); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09575.1); Has 280 Blast hits to 278 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 41; Plants - 69; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT1G57610.2p  transcript_id AT1G57610.2  protein_id AT1G57610.2p  transcript_id AT1G57610.2  
At1g57610	chr1:021338044	0.0	C/21338044-21338412,21337704-21337961,21337609-21337626	AT1G57610.3  CDS  gene_syn T8L23.8, T8L23_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF607 (InterPro:IPR006769); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09575.1); Has 235 Blast hits to 233 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 15; Plants - 68; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT1G57610.3p  transcript_id AT1G57610.3  protein_id AT1G57610.3p  transcript_id AT1G57610.3  
At1g57613	chr1:021340183	0.0	W/21340183-21340224,21340333-21340422,21340531-21340716	AT1G57613.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system.  protein_id AT1G57613.1p  transcript_id AT1G57613.1  protein_id AT1G57613.1p  transcript_id AT1G57613.1  
At1g57620	chr1:021342863	0.0	W/21342863-21343066,21343953-21344165,21344277-21344353,21344437-21344581	AT1G57620.1  CDS  gene_syn T8L23.9, T8L23_9  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_process intracellular protein transport|GO:0006886||ISS  go_function protein transmembrane transporter activity|GO:0008320||ISS  product emp24/gp25L/p24 family protein  note emp24/gp25L/p24 family protein; FUNCTIONS IN: protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family protein (TAIR:AT1G09580.1); Has 1360 Blast hits to 1358 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 707; Fungi - 343; Plants - 152; Viruses - 0; Other Eukaryotes - 158 (source: NCBI BLink).  protein_id AT1G57620.1p  transcript_id AT1G57620.1  protein_id AT1G57620.1p  transcript_id AT1G57620.1  
At1g57630	chr1:021345639	0.0	W/21345639-21346157	AT1G57630.1  CDS  gene_syn T8L23.10, T8L23_10  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR class), putative  note disease resistance protein (TIR class), putative; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT3G25510.1); Has 803 Blast hits to 752 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 803; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G57630.1p  transcript_id AT1G57630.1  protein_id AT1G57630.1p  transcript_id AT1G57630.1  
At1g57640	chr1:021346354	0.0	C/21346354-21350793	AT1G57640.1  mRNA_TE_gene  pseudo  gene_syn T8L23.26, T8L23_26  note Transposable element gene, copia-like retrotransposon family, has a 1.2e-193 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)  
At1g57650	chr1:021351291	0.0	W/21351291-21352076,21352159-21352443,21352602-21353540,21354192-21354311	AT1G57650.1  CDS  gene_syn T8L23.12, T8L23_12  go_component cellular_component|GO:0005575||ND  go_process defense response|GO:0006952||ISS  product unknown protein  note INVOLVED IN: defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT2G14080.1); Has 9494 Blast hits to 5230 proteins in 243 species: Archae - 14; Bacteria - 521; Metazoa - 749; Fungi - 25; Plants - 7706; Viruses - 8; Other Eukaryotes - 471 (source: NCBI BLink).  protein_id AT1G57650.1p  transcript_id AT1G57650.1  protein_id AT1G57650.1p  transcript_id AT1G57650.1  
At1g57660	chr1:021355567	0.0	W/21355567-21355803,21356107-21356364	AT1G57660.1  CDS  gene_syn T8L23.13, T8L23_13  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L21 (RPL21E)  note 60S ribosomal protein L21 (RPL21E); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: guard cell, juvenile leaf; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Ribosomal protein L21e (InterPro:IPR001147), Ribosomal protein L21e, conserved site (InterPro:IPR018259); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L21 (TAIR:AT1G57860.1); Has 1146 Blast hits to 1146 proteins in 281 species: Archae - 143; Bacteria - 0; Metazoa - 615; Fungi - 122; Plants - 82; Viruses - 0; Other Eukaryotes - 184 (source: NCBI BLink).  protein_id AT1G57660.1p  transcript_id AT1G57660.1  protein_id AT1G57660.1p  transcript_id AT1G57660.1  
At1g57670	chr1:021359661	0.0	C/21359661-21359872,21359352-21359597,21357169-21357874	AT1G57670.1  CDS  gene_syn T8L23.14, T8L23_14  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_process defense response|GO:0006952||ISS  product Toll-Interleukin-Resistance (TIR) domain-containing protein  note Toll-Interleukin-Resistance (TIR) domain-containing protein; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Toll-Interleukin-Resistance (TIR) domain-containing protein (TAIR:AT2G03030.1); Has 868 Blast hits to 826 proteins in 43 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 860; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G57670.1p  transcript_id AT1G57670.1  protein_id AT1G57670.1p  transcript_id AT1G57670.1  
At1g57680	chr1:021362749	0.0	C/21362749-21363837	AT1G57680.1  CDS  gene_syn T8L23.15, T8L23_15  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031277 (InterPro:IPR016971); Has 35 Blast hits to 35 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G57680.1p  transcript_id AT1G57680.1  protein_id AT1G57680.1p  transcript_id AT1G57680.1  
At1g57680	chr1:021362749	0.0	C/21362749-21363837	AT1G57680.2  CDS  gene_syn T8L23.15, T8L23_15  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031277 (InterPro:IPR016971); Has 35 Blast hits to 35 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G57680.2p  transcript_id AT1G57680.2  protein_id AT1G57680.2p  transcript_id AT1G57680.2  
At1g57690	chr1:021367971	0.0	C/21367971-21368150,21367571-21367922,21367241-21367470,21366895-21367053,21366721-21366792	AT1G57690.1  CDS  gene_syn T8L23.16, T8L23_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18150.1); Has 462 Blast hits to 457 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 462; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G57690.1p  transcript_id AT1G57690.1  protein_id AT1G57690.1p  transcript_id AT1G57690.1  
At1g57700	chr1:021371051	0.0	W/21371051-21371503,21371591-21371875,21371974-21372273,21372437-21372664,21372806-21372906,21372996-21373101,21373193-21373588,21373669-21373860	AT1G57700.1  CDS  gene_syn T8L23.17, T8L23_17  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G09600.1); Has 86309 Blast hits to 85244 proteins in 2596 species: Archae - 42; Bacteria - 7073; Metazoa - 37056; Fungi - 7956; Plants - 17619; Viruses - 388; Other Eukaryotes - 16175 (source: NCBI BLink).  protein_id AT1G57700.1p  transcript_id AT1G57700.1  protein_id AT1G57700.1p  transcript_id AT1G57700.1  
At1g57710	chr1:021374319	0.0	C/21374319-21374389	AT1G57710.1  tRNA  gene_syn 68015.TRNA-UNDET-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Undet (anticodon: ???)  transcript_id AT1G57710.1  
At1g57720	chr1:021377873	0.0	W/21377873-21377881,21378157-21378306,21378385-21378445,21378539-21378591,21378703-21378804,21378943-21379429,21379735-21380114	AT1G57720.1  CDS  gene_syn T8L23.18, T8L23_18  go_component cell wall|GO:0005618|16287169|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function copper ion binding|GO:0005507|16526091|IDA  go_function translation elongation factor activity|GO:0003746||ISS  product elongation factor 1B-gamma, putative / eEF-1B gamma, putative  note elongation factor 1B-gamma, putative / eEF-1B gamma, putative; FUNCTIONS IN: copper ion binding, translation elongation factor activity; INVOLVED IN: response to cadmium ion; LOCATED IN: cell wall, plasma membrane, vacuole, membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Translation elongation factor EF1B, gamma chain, conserved (InterPro:IPR001662), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: elongation factor 1B-gamma, putative / eEF-1B gamma, putative (TAIR:AT1G09640.1); Has 7768 Blast hits to 7335 proteins in 985 species: Archae - 0; Bacteria - 3423; Metazoa - 1547; Fungi - 368; Plants - 575; Viruses - 5; Other Eukaryotes - 1850 (source: NCBI BLink).  protein_id AT1G57720.1p  transcript_id AT1G57720.1  protein_id AT1G57720.1p  transcript_id AT1G57720.1  
At1g57720	chr1:021377873	0.0	W/21377873-21377881,21378157-21378306,21378385-21378445,21378539-21378591,21378703-21378804,21378943-21379429,21379735-21380114	AT1G57720.2  CDS  gene_syn T8L23.18, T8L23_18  go_component cell wall|GO:0005618|16287169|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function translation elongation factor activity|GO:0003746||ISS  go_function copper ion binding|GO:0005507|16526091|IDA  product elongation factor 1B-gamma, putative / eEF-1B gamma, putative  note elongation factor 1B-gamma, putative / eEF-1B gamma, putative; FUNCTIONS IN: copper ion binding, translation elongation factor activity; INVOLVED IN: response to cadmium ion; LOCATED IN: cell wall, plasma membrane, vacuole, membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Translation elongation factor EF1B, gamma chain, conserved (InterPro:IPR001662), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: elongation factor 1B-gamma, putative / eEF-1B gamma, putative (TAIR:AT1G09640.1); Has 7768 Blast hits to 7335 proteins in 985 species: Archae - 0; Bacteria - 3423; Metazoa - 1547; Fungi - 368; Plants - 575; Viruses - 5; Other Eukaryotes - 1850 (source: NCBI BLink).  protein_id AT1G57720.2p  transcript_id AT1G57720.2  protein_id AT1G57720.2p  transcript_id AT1G57720.2  
At1g57730	chr1:021380858	0.0	C/21380858-21381382	AT1G57730.1  CDS  gene_syn T8L23.19, T8L23_19  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G70910.1); Has 4077 Blast hits to 4064 proteins in 209 species: Archae - 0; Bacteria - 6; Metazoa - 1056; Fungi - 280; Plants - 2029; Viruses - 39; Other Eukaryotes - 667 (source: NCBI BLink).  protein_id AT1G57730.1p  transcript_id AT1G57730.1  protein_id AT1G57730.1p  transcript_id AT1G57730.1  
At1g57740	chr1:021382131	0.0	W/21382131-21383304	AT1G57740.1  pseudogenic_transcript  pseudo  gene_syn T8L23.25  note pseudogene, putative cytochrome P450, blastp match of 77% identity and 2.0e-12 P-value to GP|8096593|dbj|BAA96166.1||AP002092 unnamed protein product {Oryza sativa (japonica cultivar-group)}  
At1g57750	chr1:021384186	0.0	C/21384186-21385679	AT1G57750.1  CDS  gene_syn CYP96A15, CYTOCHROME P450 96 A1, MAH1, MID-CHAIN ALKANE HYDROXYLASE 1, T8L23.21, T8L23_21  gene CYP96A15  function Encodes a CYP96A15, midchain alkane hydroxylase, involved in cuticular wax biosynthesis.  go_component endoplasmic reticulum|GO:0005783|17905869|IDA  go_process wax biosynthetic process|GO:0010025|17905869|IMP  go_function oxygen binding|GO:0019825||ISS  go_function midchain alkane hydroxylase activity|GO:0080133|17905869|IMP  product CYP96A15 (CYTOCHROME P450 96 A1); midchain alkane hydroxylase/ oxygen binding  note CYTOCHROME P450 96 A1 (CYP96A15); FUNCTIONS IN: midchain alkane hydroxylase activity, oxygen binding; INVOLVED IN: wax biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP96A3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G65340.1); Has 21258 Blast hits to 21208 proteins in 1123 species: Archae - 21; Bacteria - 1784; Metazoa - 9385; Fungi - 4166; Plants - 4932; Viruses - 3; Other Eukaryotes - 967 (source: NCBI BLink).  protein_id AT1G57750.1p  transcript_id AT1G57750.1  protein_id AT1G57750.1p  transcript_id AT1G57750.1  
At1g57750	chr1:021384407	0.0	C/21384407-21385679,21384283-21384320	AT1G57750.2  CDS  gene_syn CYP96A15, CYTOCHROME P450 96 A1, MAH1, MID-CHAIN ALKANE HYDROXYLASE 1, T8L23.21, T8L23_21  gene CYP96A15  function Encodes a CYP96A15, midchain alkane hydroxylase, involved in cuticular wax biosynthesis.  go_component endoplasmic reticulum|GO:0005783|17905869|IDA  go_process wax biosynthetic process|GO:0010025|17905869|IMP  go_function oxygen binding|GO:0019825||ISS  go_function midchain alkane hydroxylase activity|GO:0080133|17905869|IMP  product CYP96A15 (CYTOCHROME P450 96 A1); midchain alkane hydroxylase/ oxygen binding  note CYTOCHROME P450 96 A1 (CYP96A15); FUNCTIONS IN: midchain alkane hydroxylase activity, oxygen binding; INVOLVED IN: wax biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP96A3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G65340.1); Has 17002 Blast hits to 16969 proteins in 1022 species: Archae - 18; Bacteria - 1256; Metazoa - 7285; Fungi - 3341; Plants - 4516; Viruses - 3; Other Eukaryotes - 583 (source: NCBI BLink).  protein_id AT1G57750.2p  transcript_id AT1G57750.2  protein_id AT1G57750.2p  transcript_id AT1G57750.2  
At1g57760	chr1:021390082	0.0	W/21390082-21390429	AT1G57760.1  CDS  gene_syn T8L23.22, T8L23_22  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G45223.1); Has 38 Blast hits to 38 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G57760.1p  transcript_id AT1G57760.1  protein_id AT1G57760.1p  transcript_id AT1G57760.1  
At1g57765	chr1:021393493	0.0	W/21393493-21393577,21394296-21394534	AT1G57765.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09645.1); Has 31 Blast hits to 31 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G57765.1p  transcript_id AT1G57765.1  protein_id AT1G57765.1p  transcript_id AT1G57765.1  
At1g57770	chr1:021395254	0.0	W/21395254-21395398,21395709-21395932,21396075-21396185,21396314-21396367,21396452-21396543,21396641-21396836,21396965-21397156,21397247-21397405,21397499-21397735,21397821-21398135	AT1G57770.1  CDS  gene_syn F12K22.18  go_component chloroplast|GO:0009507|18431481|IDA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product amine oxidase family  note amine oxidase family; FUNCTIONS IN: oxidoreductase activity; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD dependent oxidoreductase (InterPro:IPR006076); BEST Arabidopsis thaliana protein match is: CRTISO (CAROTENOID ISOMERASE); carotenoid isomerase (TAIR:AT1G06820.1); Has 4784 Blast hits to 4705 proteins in 573 species: Archae - 90; Bacteria - 1781; Metazoa - 346; Fungi - 53; Plants - 173; Viruses - 0; Other Eukaryotes - 2341 (source: NCBI BLink).  protein_id AT1G57770.1p  transcript_id AT1G57770.1  protein_id AT1G57770.1p  transcript_id AT1G57770.1  
At1g57775	chr1:021399721	0.0	C/21399721-21400068	AT1G57775.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G57777.1); Has 36 Blast hits to 36 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G57775.1p  transcript_id AT1G57775.1  protein_id AT1G57775.1p  transcript_id AT1G57775.1  
At1g57777	chr1:021401369	0.0	C/21401369-21401716	AT1G57777.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G57775.1); Has 36 Blast hits to 36 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G57777.1p  transcript_id AT1G57777.1  protein_id AT1G57777.1p  transcript_id AT1G57777.1  
At1g57780	chr1:021403000	0.0	W/21403000-21403085,21403198-21403286,21403405-21403624,21403746-21403828,21403912-21404228	AT1G57780.1  CDS  gene_syn F12K22.17, F12K22_17  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: MEE56 (maternal effect embryo arrest 56); metal ion binding (TAIR:AT4G13380.1); Has 322 Blast hits to 297 proteins in 59 species: Archae - 5; Bacteria - 18; Metazoa - 38; Fungi - 5; Plants - 150; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).  protein_id AT1G57780.1p  transcript_id AT1G57780.1  protein_id AT1G57780.1p  transcript_id AT1G57780.1  
At1g57790	chr1:021404578	0.0	C/21404578-21405636	AT1G57790.1  CDS  gene_syn F12K22.16, F12K22_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G56470.1); Has 329 Blast hits to 324 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 329; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G57790.1p  transcript_id AT1G57790.1  protein_id AT1G57790.1p  transcript_id AT1G57790.1  
At1g57800	chr1:021411774	0.0	C/21411774-21412283,21410350-21410879,21410104-21410229,21409917-21410019,21409755-21409807,21409568-21409670,21409345-21409492,21409027-21409241,21408747-21408941	AT1G57800.1  CDS  gene_syn F12K22.15, F12K22_15, ORTH3, ORTHRUS 3, VARIANT IN METHYLATION 5, VIM5  gene VIM5  function predicted to encode a protein with an N-terminal PHD domain and two RING domains surrounding an SRA domain. Attempts to isolate ORTH3/VIM5 cDNA through RT-PCR were unsuccessful and only one Arabidopsis EST is associated with this locus.  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product VIM5 (VARIANT IN METHYLATION 5); protein binding / zinc ion binding  note VARIANT IN METHYLATION 5 (VIM5); FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), SRA-YDG (InterPro:IPR003105), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: VIM1 (VARIANT IN METHYLATION 1); DNA binding / chromatin binding / double-stranded methylated DNA binding / histone binding / methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding / ubiquitin-protein ligase (TAIR:AT1G57820.1); Has 3891 Blast hits to 3797 proteins in 1030 species: Archae - 0; Bacteria - 8; Metazoa - 3358; Fungi - 147; Plants - 237; Viruses - 0; Other Eukaryotes - 141 (source: NCBI BLink).  protein_id AT1G57800.1p  transcript_id AT1G57800.1  protein_id AT1G57800.1p  transcript_id AT1G57800.1  
At1g57810	chr1:021413055	0.0	C/21413055-21413738	AT1G57810.1  mRNA_TE_gene  pseudo  gene_syn F12K22.20  note Transposable element gene, pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 29% identity and 1.1e-12 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}  
At1g57820	chr1:021417429	0.0	C/21417429-21417902,21416374-21416903,21416019-21416135,21415795-21415894,21415658-21415722,21415476-21415578,21415258-21415402,21414796-21415010,21414342-21414521	AT1G57820.2  CDS  gene_syn F12K22.14, F12K22_14, ORTH2, ORTHRUS 2, VARIANT IN METHYLATION 1, VIM1  gene VIM1  function Encodes a 645-amino acid methylcytosine-binding protein with a PHD domain, two RING finger domains, and an SRA domain that is involved in centromere heterochromatinization. This protein functions as an E3 ubiquitin ligase in vitro. The protein has been shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the former. It plays a role in the establishment/maintenance of chromatin structure during cell division and is localized in the nucleus. Plants over-expressing VIM1/ORTH2 show an inhibition in root growth and a delay in flowering. Both over-expression of GFP:ORTH2 and loss of ORTH2/VIM1 lead to decreased levels of DNA methylation. GFP:ORTH2 over-expressers also have increased levels of FWA transcripts.  go_component nucleus|GO:0005634|17892444|IDA  go_component chromocenter|GO:0010369|17242155|IDA  go_process establishment or maintenance of chromatin architecture|GO:0006325|17892444|IPI  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process protein ubiquitination|GO:0016567|18643997|IDA  go_process centromeric heterochromatin formation|GO:0031508|17242155|IMP  go_process DNA methylation on cytosine|GO:0032776|17242155|IMP  go_process cell division|GO:0051301|17892444|IDA  go_function DNA binding|GO:0003677||ISS  go_function chromatin binding|GO:0003682|17242155|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|18643997|IDA  go_function methyl-CpG binding|GO:0008327|17239600|IDA  go_function double-stranded methylated DNA binding|GO:0010385|17242155|IDA  go_function methyl-CpNpG binding|GO:0010428|17239600|IDA  go_function methyl-CpNpN binding|GO:0010429|17239600|IDA  go_function histone binding|GO:0042393|17242155|IPI  product VIM1 (VARIANT IN METHYLATION 1); DNA binding / chromatin binding / double-stranded methylated DNA binding / histone binding / methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding / ubiquitin-protein ligase  note VARIANT IN METHYLATION 1 (VIM1); FUNCTIONS IN: in 8 functions; INVOLVED IN: in 6 processes; LOCATED IN: nucleus, chromocenter; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), SRA-YDG (InterPro:IPR003105), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: VIM5 (VARIANT IN METHYLATION 5); protein binding / zinc ion binding (TAIR:AT1G57800.1); Has 3171 Blast hits to 2679 proteins in 403 species: Archae - 0; Bacteria - 8; Metazoa - 2531; Fungi - 162; Plants - 289; Viruses - 5; Other Eukaryotes - 176 (source: NCBI BLink).  protein_id AT1G57820.2p  transcript_id AT1G57820.2  protein_id AT1G57820.2p  transcript_id AT1G57820.2  
At1g57820	chr1:021417429	0.0	C/21417429-21417902,21416374-21416903,21416019-21416144,21415795-21415894,21415658-21415722,21415476-21415578,21415258-21415402,21414796-21415010,21414342-21414521	AT1G57820.1  CDS  gene_syn F12K22.14, F12K22_14, ORTH2, ORTHRUS 2, VARIANT IN METHYLATION 1, VIM1  gene VIM1  function Encodes a 645-amino acid methylcytosine-binding protein with a PHD domain, two RING finger domains, and an SRA domain that is involved in centromere heterochromatinization. This protein functions as an E3 ubiquitin ligase in vitro. The protein has been shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the former. It plays a role in the establishment/maintenance of chromatin structure during cell division and is localized in the nucleus. Plants over-expressing VIM1/ORTH2 show an inhibition in root growth and a delay in flowering. Both over-expression of GFP:ORTH2 and loss of ORTH2/VIM1 lead to decreased levels of DNA methylation. GFP:ORTH2 over-expressers also have increased levels of FWA transcripts.  go_component nucleus|GO:0005634|17892444|IDA  go_component chromocenter|GO:0010369|17242155|IDA  go_process establishment or maintenance of chromatin architecture|GO:0006325|17892444|IPI  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process protein ubiquitination|GO:0016567|18643997|IDA  go_process centromeric heterochromatin formation|GO:0031508|17242155|IMP  go_process DNA methylation on cytosine|GO:0032776|17242155|IMP  go_process cell division|GO:0051301|17892444|IDA  go_function DNA binding|GO:0003677||ISS  go_function chromatin binding|GO:0003682|17242155|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|18643997|IDA  go_function methyl-CpG binding|GO:0008327|17239600|IDA  go_function double-stranded methylated DNA binding|GO:0010385|17242155|IDA  go_function methyl-CpNpG binding|GO:0010428|17239600|IDA  go_function methyl-CpNpN binding|GO:0010429|17239600|IDA  go_function histone binding|GO:0042393|17242155|IPI  product VIM1 (VARIANT IN METHYLATION 1); DNA binding / chromatin binding / double-stranded methylated DNA binding / histone binding / methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding / ubiquitin-protein ligase  note VARIANT IN METHYLATION 1 (VIM1); FUNCTIONS IN: in 8 functions; INVOLVED IN: in 6 processes; LOCATED IN: nucleus, chromocenter; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), SRA-YDG (InterPro:IPR003105), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: VIM5 (VARIANT IN METHYLATION 5); protein binding / zinc ion binding (TAIR:AT1G57800.1); Has 3174 Blast hits to 2682 proteins in 402 species: Archae - 0; Bacteria - 8; Metazoa - 2530; Fungi - 162; Plants - 290; Viruses - 5; Other Eukaryotes - 179 (source: NCBI BLink).  protein_id AT1G57820.1p  transcript_id AT1G57820.1  protein_id AT1G57820.1p  transcript_id AT1G57820.1  
At1g57830	chr1:021420309	0.0	W/21420309-21420803	AT1G57830.1  CDS  gene_syn F12K22.13, F12K22_13  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_process defense response|GO:0006952||ISS  product Toll-Interleukin-Resistance (TIR) domain-containing protein  note Toll-Interleukin-Resistance (TIR) domain-containing protein; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Toll-Interleukin-Resistance (TIR) domain-containing protein (TAIR:AT1G60320.1); Has 836 Blast hits to 800 proteins in 38 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 832; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G57830.1p  transcript_id AT1G57830.1  protein_id AT1G57830.1p  transcript_id AT1G57830.1  
At1g57835	chr1:021422460	0.0	W/21422460-21423346	AT1G57835.1  ncRNA  function unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G57835.1  
At1g57840	chr1:021424799	0.0	W/21424799-21426173	AT1G57840.1  pseudogenic_transcript  pseudo  gene_syn F12K22.21  note pseudogene, putative disease resistance protein  
At1g57850	chr1:021425481	0.0	W/21425481-21425574,21426823-21426910,21427094-21427349	AT1G57850.2  CDS  gene_syn F12K22.22, F12K22_22  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_process defense response|GO:0006952||ISS  product Toll-Interleukin-Resistance (TIR) domain-containing protein  note Toll-Interleukin-Resistance (TIR) domain-containing protein; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: leaf lamina base, leaf whorl, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.10 ten leaves visible, LP.02 two leaves visible, LP.12 twelve leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Toll-Interleukin-Resistance (TIR) domain-containing protein (TAIR:AT2G03300.1).  protein_id AT1G57850.2p  transcript_id AT1G57850.2  protein_id AT1G57850.2p  transcript_id AT1G57850.2  
At1g57850	chr1:021426690	0.0	W/21426690-21426910,21427094-21427349	AT1G57850.1  CDS  gene_syn F12K22.22, F12K22_22  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_process defense response|GO:0006952||ISS  product Toll-Interleukin-Resistance (TIR) domain-containing protein  note Toll-Interleukin-Resistance (TIR) domain-containing protein; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: leaf lamina base, leaf whorl, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.10 ten leaves visible, LP.02 two leaves visible, LP.12 twelve leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Toll-Interleukin-Resistance (TIR) domain-containing protein (TAIR:AT2G03300.1); Has 846 Blast hits to 806 proteins in 40 species: Archae - 0; Bacteria - 3; Metazoa - 2; Fungi - 0; Plants - 841; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G57850.1p  transcript_id AT1G57850.1  protein_id AT1G57850.1p  transcript_id AT1G57850.1  
At1g57860	chr1:021430591	0.0	C/21430591-21430827,21430034-21430291	AT1G57860.1  CDS  gene_syn F12K22.19  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L21  note 60S ribosomal protein L21; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, ribosome; EXPRESSED IN: juvenile leaf; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Ribosomal protein L21e (InterPro:IPR001147), Ribosomal protein L21e, conserved site (InterPro:IPR018259); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L21 (RPL21E) (TAIR:AT1G57660.1); Has 1146 Blast hits to 1146 proteins in 281 species: Archae - 143; Bacteria - 0; Metazoa - 615; Fungi - 122; Plants - 82; Viruses - 0; Other Eukaryotes - 184 (source: NCBI BLink).  protein_id AT1G57860.1p  transcript_id AT1G57860.1  protein_id AT1G57860.1p  transcript_id AT1G57860.1  
At1g57870	chr1:021434737	0.0	C/21434737-21434877,21434516-21434608,21434371-21434430,21434024-21434296,21433578-21433652,21432951-21433007,21432731-21432871,21432589-21432639,21432311-21432406,21431760-21431843,21431543-21431645,21431358-21431446	AT1G57870.1  CDS  gene_syn ARABIDOPSIS SHAGGY-LIKE KINASE 42, ATSK42, F12K22.12, F12K22_12  gene ATSK42  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_process hyperosmotic response|GO:0006972|12376626|IEP  go_process response to salt stress|GO:0009651|12376626|IEP  go_function protein kinase activity|GO:0004672||ISS  product ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42); ATP binding / protein kinase/ protein serine/threonine kinase  note ARABIDOPSIS SHAGGY-LIKE KINASE 42 (ATSK42); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: response to salt stress, hyperosmotic response; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41); ATP binding / protein kinase/ protein serine/threonine kinase (TAIR:AT1G09840.6); Has 76330 Blast hits to 75455 proteins in 2640 species: Archae - 33; Bacteria - 5674; Metazoa - 33053; Fungi - 7700; Plants - 14404; Viruses - 352; Other Eukaryotes - 15114 (source: NCBI BLink).  protein_id AT1G57870.1p  transcript_id AT1G57870.1  protein_id AT1G57870.1p  transcript_id AT1G57870.1  
At1g57870	chr1:021434737	0.0	C/21434737-21434877,21434516-21434608,21434371-21434430,21434024-21434296,21433578-21433652,21432951-21433007,21432731-21432871,21432589-21432639,21432311-21432406,21431760-21431843,21431543-21431645,21431358-21431446	AT1G57870.2  CDS  gene_syn ARABIDOPSIS SHAGGY-LIKE KINASE 42, ATSK42, F12K22.12, F12K22_12  gene ATSK42  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_process hyperosmotic response|GO:0006972|12376626|IEP  go_process response to salt stress|GO:0009651|12376626|IEP  go_function protein kinase activity|GO:0004672||ISS  product ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42); ATP binding / protein kinase/ protein serine/threonine kinase  note ARABIDOPSIS SHAGGY-LIKE KINASE 42 (ATSK42); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: response to salt stress, hyperosmotic response; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41); ATP binding / protein kinase/ protein serine/threonine kinase (TAIR:AT1G09840.6); Has 76330 Blast hits to 75455 proteins in 2640 species: Archae - 33; Bacteria - 5674; Metazoa - 33053; Fungi - 7700; Plants - 14404; Viruses - 352; Other Eukaryotes - 15114 (source: NCBI BLink).  protein_id AT1G57870.2p  transcript_id AT1G57870.2  protein_id AT1G57870.2p  transcript_id AT1G57870.2  
At1g57906	chr1:021435427	0.0	W/21435427-21435512,21435837-21435876,21436250-21436810	AT1G57906.1  CDS  gene_syn F13D13.1, F13D13_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: SDC (SUPPRESSOR OF DRM1 DRM2 CMT3) (TAIR:AT2G17690.1); Has 28 Blast hits to 28 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G57906.1p  transcript_id AT1G57906.1  protein_id AT1G57906.1p  transcript_id AT1G57906.1  
At1g57943	chr1:021438850	0.0	C/21438850-21438889,21437602-21438755	AT1G57943.2  CDS  gene_syn ATPUP17, F13D13.4, F13D13_4  gene ATPUP17  function Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.  go_component membrane|GO:0016020|10662864|TAS  go_process purine transport|GO:0006863|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345|10662864|TAS  product ATPUP17; purine transmembrane transporter  note ATPUP17; FUNCTIONS IN: purine transmembrane transporter activity; INVOLVED IN: purine transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: ATPUP18; purine transmembrane transporter (TAIR:AT1G57990.1); Has 192 Blast hits to 186 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 192; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G57943.2p  transcript_id AT1G57943.2  protein_id AT1G57943.2p  transcript_id AT1G57943.2  
At1g57943	chr1:021438850	0.0	C/21438850-21438889,21437602-21438758	AT1G57943.1  CDS  gene_syn ATPUP17, F13D13.4, F13D13_4  gene ATPUP17  function Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.  go_component membrane|GO:0016020|10662864|TAS  go_process purine transport|GO:0006863|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345|10662864|TAS  product ATPUP17; purine transmembrane transporter  note ATPUP17; FUNCTIONS IN: purine transmembrane transporter activity; INVOLVED IN: purine transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: purine permease-related (TAIR:AT1G57980.1); Has 192 Blast hits to 186 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 192; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G57943.1p  transcript_id AT1G57943.1  protein_id AT1G57943.1p  transcript_id AT1G57943.1  
At1g57980	chr1:021440693	0.0	C/21440693-21440732,21439444-21440588	AT1G57980.1  CDS  gene_syn F13D13.2, F13D13_2  go_function purine transmembrane transporter activity|GO:0005345||ISS  product purine permease-related  note purine permease-related; FUNCTIONS IN: purine transmembrane transporter activity; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: ATPUP18; purine transmembrane transporter (TAIR:AT1G57990.1); Has 199 Blast hits to 193 proteins in 8 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 195; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G57980.1p  transcript_id AT1G57980.1  protein_id AT1G57980.1p  transcript_id AT1G57980.1  
At1g57990	chr1:021441700	0.0	C/21441700-21442872	AT1G57990.1  CDS  gene_syn ATPUP18, F13D13.3  gene ATPUP18  function Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|10662864|TAS  go_process purine transport|GO:0006863|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345||ISS  product ATPUP18; purine transmembrane transporter  note ATPUP18; FUNCTIONS IN: purine transmembrane transporter activity; INVOLVED IN: purine transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Lipocalin (InterPro:IPR002345), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: purine permease-related (TAIR:AT1G57980.1); Has 194 Blast hits to 188 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 194; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G57990.1p  transcript_id AT1G57990.1  protein_id AT1G57990.1p  transcript_id AT1G57990.1  
At1g58007	chr1:021446835	0.0	C/21446835-21447059,21446237-21446359	AT1G58007.1  CDS  product unknown protein  note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09812.1); Has 45 Blast hits to 45 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G58007.1p  transcript_id AT1G58007.1  protein_id AT1G58007.1p  transcript_id AT1G58007.1  
At1g58007	chr1:021446835	0.0	C/21446835-21447059,21446237-21446359	AT1G58007.2  CDS  product unknown protein  note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09812.1); Has 45 Blast hits to 45 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G58007.2p  transcript_id AT1G58007.2  protein_id AT1G58007.2p  transcript_id AT1G58007.2  
At1g58010	chr1:021448885	0.0	C/21448885-21449134	AT1G58010.1  pseudogenic_transcript  pseudo  gene_syn T15M6.23  note pseudogene, putative ribosomal protein, blastp match of 70% identity and 8.4e-15 P-value to GP|5762260|dbj|BAA83471.1||AB008848 Csf-3 {Cucumis sativus}  
At1g58020	chr1:021450213	0.0	C/21450213-21455851	AT1G58020.1  mRNA_TE_gene  pseudo  gene_syn T15M6.4  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 3.7e-49 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At1g58025	chr1:021461095	0.0	C/21461095-21461757,21460901-21460978,21460034-21460268,21459371-21459428,21459045-21459132,21458550-21458930,21458219-21458434	AT1G58025.1  CDS  gene_syn T15M6.22, T15M6_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Bromodomain, conserved site (InterPro:IPR018359), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: GTE6 (GENERAL TRANSCRIPTION FACTOR GROUP E6); DNA binding / H3/H4 histone acetyltransferase (TAIR:AT3G52280.1); Has 1681 Blast hits to 1341 proteins in 127 species: Archae - 0; Bacteria - 31; Metazoa - 1070; Fungi - 94; Plants - 24; Viruses - 13; Other Eukaryotes - 449 (source: NCBI BLink).  protein_id AT1G58025.1p  transcript_id AT1G58025.1  protein_id AT1G58025.1p  transcript_id AT1G58025.1  
At1g58030	chr1:021467985	0.0	C/21467985-21468141,21467511-21467712,21467327-21467411,21466717-21466857,21466512-21466630,21466341-21466437,21466042-21466214,21465885-21465951,21465555-21465713,21465211-21465463,21465017-21465125,21464801-21464913,21464626-21464701,21464185-21464341	AT1G58030.1  CDS  gene_syn CAT2, CATIONIC AMINO ACID TRANSPORTER 2  gene CAT2  function Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Localized to the tonoplast.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process transport|GO:0006810||IEA  go_process amino acid transport|GO:0006865||IEA  go_function amino acid transmembrane transporter activity|GO:0015171||IEA  go_component plant-type vacuole membrane|GO:0009705|15377779|IDA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  product CAT2 (CATIONIC AMINO ACID TRANSPORTER 2); amino acid transmembrane transporter  note CATIONIC AMINO ACID TRANSPORTER 2 (CAT2); FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport, transport; LOCATED IN: plant-type vacuole membrane, plasma membrane, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cationic amino acid transporter (InterPro:IPR015606), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease-associated region (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: CAT3 (CATIONIC AMINO ACID TRANSPORTER 3); basic amino acid transmembrane transporter/ cationic amino acid transmembrane transporter (TAIR:AT5G36940.1); Has 20039 Blast hits to 19053 proteins in 1275 species: Archae - 319; Bacteria - 14360; Metazoa - 2021; Fungi - 1849; Plants - 267; Viruses - 0; Other Eukaryotes - 1223 (source: NCBI BLink).  protein_id AT1G58030.1p  transcript_id AT1G58030.1  protein_id AT1G58030.1p  transcript_id AT1G58030.1  
At1g58037	chr1:021473505	0.0	C/21473505-21474536	AT1G58037.1  CDS  go_process intracellular signaling cascade|GO:0007242||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular signaling cascade; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT5G45730.1); Has 1201 Blast hits to 455 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1193; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G58037.1p  transcript_id AT1G58037.1  protein_id AT1G58037.1p  transcript_id AT1G58037.1  
At1g58037	chr1:021473757	0.0	C/21473757-21474536,21473505-21473612	AT1G58037.2  CDS  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT5G45730.1); Has 1136 Blast hits to 454 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1130; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G58037.2p  transcript_id AT1G58037.2  protein_id AT1G58037.2p  transcript_id AT1G58037.2  
At1g58040	chr1:021476022	0.0	W/21476022-21476737	AT1G58040.1  mRNA_TE_gene  pseudo  gene_syn T15M6.20  note Transposable element gene, copia-like retrotransposon family, has a 1.3e-28 P-value blast match to gb|AAO73521.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At1g58050	chr1:021487546	0.0	C/21487546-21487839,21487354-21487459,21487070-21487275,21486931-21486966,21486472-21486622,21486013-21486386,21485606-21485824,21485125-21485236,21484837-21485025,21484654-21484730,21484349-21484471,21484185-21484262,21483888-21483988,21483636-21483693,21483435-21483500,21483115-21483200,21482834-21483017,21482645-21482750,21482448-21482551,21482212-21482364,21481967-21482071,21481440-21481580,21481260-21481349,21481121-21481177,21480829-21480912,21480639-21480740,21480415-21480552,21480140-21480210,21479930-21479996,21479633-21479719,21479360-21479548,21479065-21479160,21478760-21478882,21478590-21478670	AT1G58050.1  CDS  gene_syn T15M6.6, T15M6_6  go_component chloroplast|GO:0009507||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function helicase activity|GO:0004386||ISS  go_function ATP binding|GO:0005524||ISS  product helicase domain-containing protein  note helicase domain-containing protein; FUNCTIONS IN: helicase activity, ATP binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Helicase-associated region (InterPro:IPR007502), Region of unknown function DUF1605 (InterPro:IPR011709), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: helicase domain-containing protein (TAIR:AT1G58060.1); Has 8070 Blast hits to 6173 proteins in 931 species: Archae - 2; Bacteria - 2658; Metazoa - 2286; Fungi - 922; Plants - 402; Viruses - 205; Other Eukaryotes - 1595 (source: NCBI BLink).  protein_id AT1G58050.1p  transcript_id AT1G58050.1  protein_id AT1G58050.1p  transcript_id AT1G58050.1  
At1g58055	chr1:021488741	0.0	W/21488741-21488828,21488913-21489064	AT1G58055.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: LCR50 (Low-molecular-weight cysteine-rich 50) (TAIR:AT2G12465.1); Has 19 Blast hits to 19 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G58055.1p  transcript_id AT1G58055.1  protein_id AT1G58055.1p  transcript_id AT1G58055.1  
At1g58060	chr1:021501476	0.0	C/21501476-21501775,21501266-21501371,21500992-21501185,21500775-21500828,21500133-21500283,21499643-21500049,21499120-21499338,21498731-21498842,21498184-21498378,21497998-21498074,21497683-21497805,21497469-21497555,21497141-21497241,21496248-21496305,21495767-21495832,21495224-21495309,21494957-21495140,21494299-21494445,21494094-21494195,21493858-21494010,21493271-21493375,21492745-21492885,21492574-21492663,21492441-21492497,21492067-21492150,21491726-21491824,21491511-21491651,21491286-21491356,21490832-21490901,21490554-21490646,21490187-21490396,21489888-21489980,21489652-21489774,21489480-21489560	AT1G58060.1  CDS  gene_syn T15M6.7, T15M6_7  go_component chloroplast|GO:0009507||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function helicase activity|GO:0004386||ISS  go_function ATP binding|GO:0005524||ISS  product helicase domain-containing protein  note helicase domain-containing protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Helicase-associated region (InterPro:IPR007502), Region of unknown function DUF1605 (InterPro:IPR011709), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: helicase domain-containing protein (TAIR:AT1G58050.1); Has 10025 Blast hits to 6282 proteins in 925 species: Archae - 4; Bacteria - 3513; Metazoa - 2793; Fungi - 1256; Plants - 489; Viruses - 128; Other Eukaryotes - 1842 (source: NCBI BLink).  protein_id AT1G58060.1p  transcript_id AT1G58060.1  protein_id AT1G58060.1p  transcript_id AT1G58060.1  
At1g58070	chr1:021502968	0.0	W/21502968-21503822	AT1G58070.1  CDS  gene_syn T15M6.8, T15M6_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.10 ten leaves visible, petal differentiation and expansion stage; Has 224 Blast hits to 204 proteins in 63 species: Archae - 2; Bacteria - 14; Metazoa - 88; Fungi - 16; Plants - 36; Viruses - 4; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT1G58070.1p  transcript_id AT1G58070.1  protein_id AT1G58070.1p  transcript_id AT1G58070.1  
At1g58080	chr1:021507139	0.0	C/21507139-21507429,21506577-21506636,21506375-21506488,21506067-21506132,21505879-21505986,21505686-21505769,21505403-21505504,21505197-21505310,21505041-21505121,21504841-21504960,21504562-21504657	AT1G58080.1  CDS  gene_syn ATATP-PRT1, ATP PHOSPHORIBOSYL TRANSFERASE, ATP PHOSPHORIBOSYL TRANSFERASE 1, HISN1A, T15M6.9, T15M6_9  gene ATATP-PRT1  function ATP phosphoribosyl transferase, catalyses first step of histidine biosynthesis  go_component chloroplast|GO:0009507|18431481|IDA  go_process histidine biosynthetic process|GO:0000105|10712555|IDA  go_function ATP phosphoribosyltransferase activity|GO:0003879|10712555|IDA  product ATATP-PRT1 (ATP PHOSPHORIBOSYL TRANSFERASE 1); ATP phosphoribosyltransferase  note ATP PHOSPHORIBOSYL TRANSFERASE 1 (ATATP-PRT1); FUNCTIONS IN: ATP phosphoribosyltransferase activity; INVOLVED IN: histidine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histidine biosynthesis HisG: ATP phosphoribosyltransferase (InterPro:IPR001348), ATP phosphoribosyltransferase, conserved site (InterPro:IPR018198), ATP phosphoribosyltransferase, catalytic region (InterPro:IPR013820), Histidine biosynthesis HisG, C-terminal (InterPro:IPR013115), Nitrogen regulatory PII-like, alpha/beta (InterPro:IPR011322); BEST Arabidopsis thaliana protein match is: ATATP-PRT2 (ATP PHOSPHORIBOSYL TRANSFERASE 2); ATP phosphoribosyltransferase (TAIR:AT1G09795.1); Has 4370 Blast hits to 4370 proteins in 1235 species: Archae - 134; Bacteria - 2261; Metazoa - 0; Fungi - 96; Plants - 37; Viruses - 0; Other Eukaryotes - 1842 (source: NCBI BLink).  protein_id AT1G58080.1p  transcript_id AT1G58080.1  protein_id AT1G58080.1p  transcript_id AT1G58080.1  
At1g58090	chr1:021510510	0.0	W/21510510-21511625	AT1G58090.1  CDS  gene_syn T15M6.10, T15M6_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein-related (TAIR:AT1G59630.1); Has 632 Blast hits to 628 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 632; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G58090.1p  transcript_id AT1G58090.1  protein_id AT1G58090.1p  transcript_id AT1G58090.1  
At1g58100	chr1:021512680	0.0	C/21512680-21513885	AT1G58100.1  CDS  gene_syn T15M6.11  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product TCP family transcription factor, putative  note TCP family transcription factor, putative; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor, putative (TAIR:AT1G72010.1); Has 287 Blast hits to 281 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 50; Fungi - 2; Plants - 223; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G58100.1p  transcript_id AT1G58100.1  protein_id AT1G58100.1p  transcript_id AT1G58100.1  
At1g58100	chr1:021513612	0.0	C/21513612-21513885,21512680-21513539	AT1G58100.2  CDS  gene_syn T15M6.11  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product TCP family transcription factor, putative  note TCP family transcription factor, putative; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor, putative (TAIR:AT1G72010.1); Has 232 Blast hits to 227 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 44; Fungi - 2; Plants - 174; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G58100.2p  transcript_id AT1G58100.2  protein_id AT1G58100.2p  transcript_id AT1G58100.2  
At1g58110	chr1:021516656	0.0	C/21516656-21517374,21516489-21516564,21516259-21516385,21515919-21516121	AT1G58110.1  CDS  gene_syn T15M6.12  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700||IEA  go_function sequence-specific DNA binding|GO:0043565||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product bZIP family transcription factor  note bZIP family transcription factor; FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G06598.1); Has 469 Blast hits to 465 proteins in 74 species: Archae - 0; Bacteria - 2; Metazoa - 56; Fungi - 20; Plants - 358; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT1G58110.1p  transcript_id AT1G58110.1  protein_id AT1G58110.1p  transcript_id AT1G58110.1  
At1g58110	chr1:021516656	0.0	C/21516656-21517374,21516489-21516564,21516259-21516385,21515919-21516121	AT1G58110.2  CDS  gene_syn T15M6.12  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700||IEA  go_function sequence-specific DNA binding|GO:0043565||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product bZIP family transcription factor  note bZIP family transcription factor; FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G06598.1); Has 469 Blast hits to 465 proteins in 74 species: Archae - 0; Bacteria - 2; Metazoa - 56; Fungi - 20; Plants - 358; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT1G58110.2p  transcript_id AT1G58110.2  protein_id AT1G58110.2p  transcript_id AT1G58110.2  
At1g58122	chr1:021520670	0.0	W/21520670-21520780	AT1G58122.1  CDS  gene_syn CPuORF45, Conserved peptide upstream open reading frame 45  gene CPuORF45  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF45 represents a conserved upstream opening reading frame relative to major ORF AT1G58120.1  product CPuORF45 (Conserved peptide upstream open reading frame 45)  note Conserved peptide upstream open reading frame 45 (CPuORF45); Has 2 Blast hits to 2 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G58122.1p  transcript_id AT1G58122.1  protein_id AT1G58122.1p  transcript_id AT1G58122.1  
At1g58120	chr1:021520962	0.0	W/21520962-21522224	AT1G58120.1  CDS  gene_syn T15M6.13  product unknown protein  note unknown protein; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; Has 42 Blast hits to 42 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G58120.1p  transcript_id AT1G58120.1  protein_id AT1G58120.1p  transcript_id AT1G58120.1  
At1g58130	chr1:021523336	0.0	C/21523336-21524056	AT1G58130.1  pseudogenic_transcript  pseudo  gene_syn T15M6.21  note pseudogene, putative heat shock transcription factor HSF30  
At1g58140	chr1:021525422	0.0	C/21525422-21529384	AT1G58140.1  mRNA_TE_gene  pseudo  gene_syn T15M6.14  note Transposable element gene, copia-like retrotransposon family, has a 1.6e-253 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At1g58150	chr1:021530103	0.0	W/21530103-21530129,21530210-21530458	AT1G58150.1  CDS  gene_syn T15M6.2  go_process gluconeogenesis|GO:0006094||IEA  go_process glycolysis|GO:0006096||IEA  go_process reductive pentose-phosphate cycle|GO:0019253||IEA  go_process aerobic glycerol catabolic process|GO:0019564||IEA  go_process glucose catabolic process to butanediol|GO:0019650||IEA  go_process acetate fermentation|GO:0019654||IEA  go_process glucose catabolic process to D-lactate and ethanol|GO:0019656||IEA  go_process glucose catabolic process to lactate and acetate|GO:0019658||IEA  go_process glyceraldehyde-3-phosphate catabolic process|GO:0019683||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 9 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G58150.1p  transcript_id AT1G58150.1  protein_id AT1G58150.1p  transcript_id AT1G58150.1  
At1g58160	chr1:021533757	0.0	W/21533757-21533825,21533880-21533954,21534198-21534440	AT1G58160.1  CDS  gene_syn T15M6.3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product jacalin lectin family protein  note jacalin lectin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G60110.1); Has 517 Blast hits to 227 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 517; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G58160.1p  transcript_id AT1G58160.1  protein_id AT1G58160.1p  transcript_id AT1G58160.1  
At1g58170	chr1:021536188	0.0	W/21536188-21536745	AT1G58170.1  CDS  gene_syn T15M6.17  go_component endomembrane system|GO:0012505||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process defense response|GO:0006952||ISS  go_process lignan biosynthetic process|GO:0009807||ISS  go_function molecular_function|GO:0003674||ND  product disease resistance-responsive protein-related / dirigent protein-related  note disease resistance-responsive protein-related / dirigent protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation, lignan biosynthetic process, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: disease resistance-responsive protein-related / dirigent protein-related (TAIR:AT5G49040.1); Has 477 Blast hits to 476 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 477; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G58170.1p  transcript_id AT1G58170.1  protein_id AT1G58170.1p  transcript_id AT1G58170.1  
At1g58180	chr1:021539169	0.0	C/21539169-21539290,21539005-21539053,21538791-21538904,21538648-21538701,21538483-21538571,21538299-21538401,21538010-21538198	AT1G58180.3  CDS  gene_syn A. THALIANA BETA CARBONIC ANHYDRASE 6, ATBCA6, BCA6, BETA CARBONIC ANHYDRASE 6, T15M6.18  gene BCA6  go_process carbon utilization|GO:0015976||IEA  go_function carbonate dehydratase activity|GO:0004089||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component mitochondrion|GO:0005739|17407539|IDA  go_process carbon utilization|GO:0015976||ISS  go_function carbonate dehydratase activity|GO:0004089||ISS  go_function zinc ion binding|GO:0008270||ISS  product carbonic anhydrase family protein / carbonate dehydratase family protein  note BETA CARBONIC ANHYDRASE 6 (BCA6); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: carbon utilization; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: carbonic anhydrase family protein / carbonate dehydratase family protein (TAIR:AT4G33580.1); Has 3268 Blast hits to 3254 proteins in 950 species: Archae - 35; Bacteria - 2311; Metazoa - 44; Fungi - 149; Plants - 229; Viruses - 0; Other Eukaryotes - 500 (source: NCBI BLink).  protein_id AT1G58180.3p  transcript_id AT1G58180.3  protein_id AT1G58180.3p  transcript_id AT1G58180.3  
At1g58180	chr1:021539696	0.0	C/21539696-21539711,21539554-21539615,21539394-21539458,21539169-21539300,21539005-21539053,21538791-21538904,21538648-21538701,21538483-21538571,21538299-21538401,21538010-21538198	AT1G58180.2  CDS  gene_syn A. THALIANA BETA CARBONIC ANHYDRASE 6, ATBCA6, BCA6, BETA CARBONIC ANHYDRASE 6, T15M6.18  gene BCA6  go_process carbon utilization|GO:0015976||IEA  go_function carbonate dehydratase activity|GO:0004089||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component mitochondrion|GO:0005739|17407539|IDA  go_process carbon utilization|GO:0015976||ISS  go_function carbonate dehydratase activity|GO:0004089||ISS  go_function zinc ion binding|GO:0008270||ISS  product carbonic anhydrase family protein / carbonate dehydratase family protein  note BETA CARBONIC ANHYDRASE 6 (BCA6); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: carbon utilization; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: carbonic anhydrase family protein / carbonate dehydratase family protein (TAIR:AT4G33580.1); Has 3268 Blast hits to 3254 proteins in 950 species: Archae - 35; Bacteria - 2311; Metazoa - 44; Fungi - 149; Plants - 229; Viruses - 0; Other Eukaryotes - 500 (source: NCBI BLink).  protein_id AT1G58180.2p  transcript_id AT1G58180.2  protein_id AT1G58180.2p  transcript_id AT1G58180.2  
At1g58180	chr1:021539696	0.0	C/21539696-21539711,21539554-21539615,21539394-21539458,21539169-21539300,21539005-21539053,21538791-21538904,21538648-21538701,21538483-21538571,21538299-21538401,21538132-21538198,21538010-21538029	AT1G58180.1  CDS  gene_syn A. THALIANA BETA CARBONIC ANHYDRASE 6, ATBCA6, BCA6, BETA CARBONIC ANHYDRASE 6, T15M6.18  gene BCA6  go_process carbon utilization|GO:0015976||IEA  go_function carbonate dehydratase activity|GO:0004089||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component mitochondrion|GO:0005739|17407539|IDA  go_process carbon utilization|GO:0015976||ISS  go_function carbonate dehydratase activity|GO:0004089||ISS  go_function zinc ion binding|GO:0008270||ISS  product carbonic anhydrase family protein / carbonate dehydratase family protein  note BETA CARBONIC ANHYDRASE 6 (BCA6); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: carbon utilization; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: carbonic anhydrase family protein / carbonate dehydratase family protein (TAIR:AT4G33580.1); Has 3212 Blast hits to 3200 proteins in 944 species: Archae - 35; Bacteria - 2285; Metazoa - 44; Fungi - 147; Plants - 226; Viruses - 0; Other Eukaryotes - 475 (source: NCBI BLink).  protein_id AT1G58180.1p  transcript_id AT1G58180.1  protein_id AT1G58180.1p  transcript_id AT1G58180.1  
At1g58190	chr1:021540720	0.0	W/21540720-21541074,21541310-21541465,21541600-21541668,21541758-21541832,21542187-21544223,21544782-21545009,21545270-21545425,21545541-21545609,21545706-21545774,21545856-21547996	AT1G58190.1  CDS  gene_syn AtRLP9, Receptor Like Protein 9, T18I24.10, T18I24_10  gene AtRLP9  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product AtRLP9 (Receptor Like Protein 9); protein binding  note Receptor Like Protein 9 (AtRLP9); FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP14 (Receptor Like Protein 14); protein binding (TAIR:AT1G74180.1); Has 147042 Blast hits to 23181 proteins in 886 species: Archae - 108; Bacteria - 9080; Metazoa - 49718; Fungi - 1830; Plants - 74982; Viruses - 105; Other Eukaryotes - 11219 (source: NCBI BLink).  protein_id AT1G58190.1p  transcript_id AT1G58190.1  protein_id AT1G58190.1p  transcript_id AT1G58190.1  
At1g58200	chr1:021552408	0.0	C/21552408-21552488,21552266-21552325,21551832-21551989,21551491-21551614,21551290-21551390,21551101-21551214,21550778-21550838,21550244-21550393,21550050-21550160,21549754-21549921,21549547-21549660,21549407-21549463,21548370-21549107	AT1G58200.1  CDS  gene_syn F16M22.2, F16M22_2, MSL3, MscS-LIKE 3  gene MSL3  function A member of MscS-like gene family, structurally very similar to MSL2, comprising of an N-terminal chloroplast transit peptide, five trans-membrane helices and a C-terminal cytoplasmic domain. Mutant plants showed abnormalities in the size and shape of plastids. MSL3-GFP was localized to discrete foci on the plastid envelope and co-localize with the plastid division protein AtMinE. MSL3 was capable of increasing the osmotic-shock survival of a mutant bacterial strain lacking MS-ion-channel activity.  go_component plastid envelope|GO:0009526|16401419|IDA  go_component membrane|GO:0016020||ISS  go_process response to osmotic stress|GO:0006970|16401419|IGI  go_process plastid organization|GO:0009657|16401419|IGI  go_function ion channel activity|GO:0005216|16401419|IGI  product MSL3 (MscS-LIKE 3); ion channel  note MscS-LIKE 3 (MSL3); FUNCTIONS IN: ion channel activity; INVOLVED IN: plastid organization, response to osmotic stress; LOCATED IN: membrane, plastid envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: MSL2 (MscS-LIKE 2); ion channel (TAIR:AT5G10490.1); Has 5259 Blast hits to 4676 proteins in 847 species: Archae - 100; Bacteria - 1597; Metazoa - 867; Fungi - 368; Plants - 221; Viruses - 14; Other Eukaryotes - 2092 (source: NCBI BLink).  protein_id AT1G58200.1p  transcript_id AT1G58200.1  protein_id AT1G58200.1p  transcript_id AT1G58200.1  
At1g58200	chr1:021552408	0.0	C/21552408-21552488,21552266-21552325,21551832-21551989,21551491-21551614,21551290-21551390,21551101-21551214,21550778-21550838,21550244-21550393,21550050-21550160,21549754-21549921,21549547-21549660,21549407-21549463,21548370-21549107	AT1G58200.2  CDS  gene_syn F16M22.2, F16M22_2, MSL3, MscS-LIKE 3  gene MSL3  function A member of MscS-like gene family, structurally very similar to MSL2, comprising of an N-terminal chloroplast transit peptide, five trans-membrane helices and a C-terminal cytoplasmic domain. Mutant plants showed abnormalities in the size and shape of plastids. MSL3-GFP was localized to discrete foci on the plastid envelope and co-localize with the plastid division protein AtMinE. MSL3 was capable of increasing the osmotic-shock survival of a mutant bacterial strain lacking MS-ion-channel activity.  go_component plastid envelope|GO:0009526|16401419|IDA  go_component membrane|GO:0016020||ISS  go_process response to osmotic stress|GO:0006970|16401419|IGI  go_process plastid organization|GO:0009657|16401419|IGI  go_function ion channel activity|GO:0005216|16401419|IGI  product MSL3 (MscS-LIKE 3); ion channel  note MscS-LIKE 3 (MSL3); FUNCTIONS IN: ion channel activity; INVOLVED IN: plastid organization, response to osmotic stress; LOCATED IN: membrane, plastid envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: MSL2 (MscS-LIKE 2); ion channel (TAIR:AT5G10490.1); Has 5259 Blast hits to 4676 proteins in 847 species: Archae - 100; Bacteria - 1597; Metazoa - 867; Fungi - 368; Plants - 221; Viruses - 14; Other Eukaryotes - 2092 (source: NCBI BLink).  protein_id AT1G58200.2p  transcript_id AT1G58200.2  protein_id AT1G58200.2p  transcript_id AT1G58200.2  
At1g58210	chr1:021553621	0.0	W/21553621-21554462,21555016-21555178,21555321-21558056	AT1G58210.1  CDS  gene_syn EMB1674, EMBRYO DEFECTIVE 1674, F16M22.3, F16M22_3  gene EMB1674  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product EMB1674 (EMBRYO DEFECTIVE 1674)  note EMBRYO DEFECTIVE 1674 (EMB1674); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT associated (InterPro:IPR015216), KIP1-like (InterPro:IPR011684); BEST Arabidopsis thaliana protein match is: kinase interacting family protein (TAIR:AT1G09720.1); Has 24624 Blast hits to 15362 proteins in 900 species: Archae - 370; Bacteria - 1847; Metazoa - 13466; Fungi - 2008; Plants - 1045; Viruses - 70; Other Eukaryotes - 5818 (source: NCBI BLink).  protein_id AT1G58210.1p  transcript_id AT1G58210.1  protein_id AT1G58210.1p  transcript_id AT1G58210.1  
At1g58220	chr1:021562596	0.0	C/21562596-21562669,21562322-21562511,21561790-21561876,21561219-21561578,21560191-21560335,21558388-21560036	AT1G58220.1  CDS  gene_syn F16M22.4, F16M22_4  go_function DNA binding|GO:0003677||IEA  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to jasmonic acid stimulus, response to abscisic acid stimulus, response to salicylic acid stimulus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT1G09710.1); Has 23663 Blast hits to 14313 proteins in 943 species: Archae - 24; Bacteria - 4741; Metazoa - 9542; Fungi - 3942; Plants - 1103; Viruses - 492; Other Eukaryotes - 3819 (source: NCBI BLink).  protein_id AT1G58220.1p  transcript_id AT1G58220.1  protein_id AT1G58220.1p  transcript_id AT1G58220.1  
At1g58225	chr1:021564205	0.0	W/21564205-21564280,21564498-21564641,21564784-21564995	AT1G58225.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G58225.1p  transcript_id AT1G58225.1  protein_id AT1G58225.1p  transcript_id AT1G58225.1  
At1g58227	chr1:021566331	0.0	W/21566331-21566390,21566568-21567026,21567122-21567280,21567401-21567550,21567917-21568072,21568183-21568224,21568308-21568652,21569021-21569194,21569285-21569445,21569593-21569911,21570011-21570434,21570742-21571070,21571194-21571378,21571471-21571732,21571837-21572028,21572111-21572329,21572410-21572586,21573056-21573214	AT1G58227.1  CDS  go_component chloroplast|GO:0009507||IEA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein / beige-related (TAIR:AT2G45540.1); Has 367 Blast hits to 317 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 272; Fungi - 1; Plants - 43; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT1G58227.1p  transcript_id AT1G58227.1  protein_id AT1G58227.1p  transcript_id AT1G58227.1  
At1g58230	chr1:021573706	0.0	W/21573706-21575028,21575104-21575409,21575493-21575945,21576026-21576072,21576156-21576249,21576377-21576583,21576960-21577085,21577229-21577600,21577681-21577912,21578183-21578865	AT1G58230.1  CDS  gene_syn F16M22.8  go_component mitochondrion|GO:0005739|14671022|IDA  go_process signal transduction|GO:0007165||ISS  product WD-40 repeat family protein / beige-related  note WD-40 repeat family protein / beige-related; INVOLVED IN: signal transduction; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Beige/BEACH (InterPro:IPR000409), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein / beige-related (TAIR:AT2G45540.1); Has 9475 Blast hits to 6493 proteins in 351 species: Archae - 20; Bacteria - 1966; Metazoa - 3622; Fungi - 1532; Plants - 709; Viruses - 0; Other Eukaryotes - 1626 (source: NCBI BLink).  protein_id AT1G58230.1p  transcript_id AT1G58230.1  protein_id AT1G58230.1p  transcript_id AT1G58230.1  
At1g58235	chr1:021580417	0.0	C/21580417-21580641	AT1G58235.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G58235.1p  transcript_id AT1G58235.1  protein_id AT1G58235.1p  transcript_id AT1G58235.1  
At1g58242	chr1:021582086	0.0	C/21582086-21582361	AT1G58242.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G34828.1); Has 42 Blast hits to 42 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G58242.1p  transcript_id AT1G58242.1  protein_id AT1G58242.1p  transcript_id AT1G58242.1  
At1g58245	chr1:021584264	0.0	C/21584264-21584524	AT1G58245.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G58248.1); Has 42 Blast hits to 42 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G58245.1p  transcript_id AT1G58245.1  protein_id AT1G58245.1p  transcript_id AT1G58245.1  
At1g58248	chr1:021586036	0.0	C/21586036-21586311	AT1G58248.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G58245.1); Has 42 Blast hits to 42 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G58248.1p  transcript_id AT1G58248.1  protein_id AT1G58248.1p  transcript_id AT1G58248.1  
At1g58250	chr1:021601303	0.0	C/21601303-21601373,21601088-21601199,21600401-21600667,21600050-21600312,21599642-21599861,21598765-21598935,21598587-21598664,21597534-21597785,21595151-21597244,21593210-21595010,21592919-21593016,21592222-21592578,21591245-21591363,21590747-21590993,21590140-21590364,21589772-21589911,21589254-21589326,21588973-21589074,21588723-21588893,21588324-21588635,21588071-21588238,21587575-21587935,21587317-21587426	AT1G58250.1  CDS  gene_syn F16M22.5, F16M22_5, SAB, SABRE  gene SAB  function SABRE, putative gene of unknown function, homologous to maize apt1 gene. Required for normal cell expansion in the root cortex. The sabre mutation results in abnormal cell expansion. Encodes a rare message; very low level of expression was detected in roots and shoots.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to ethylene stimulus|GO:0009723|7867930|IMP  go_process multidimensional cell growth|GO:0009825||ISS  go_process cell growth|GO:0016049|7867930|IMP  product SAB (SABRE)  note SABRE (SAB); INVOLVED IN: response to ethylene stimulus, multidimensional cell growth, cell growth; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: cell expansion protein, putative (TAIR:AT5G49680.2); Has 172 Blast hits to 127 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 99; Fungi - 11; Plants - 46; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G58250.1p  transcript_id AT1G58250.1  protein_id AT1G58250.1p  transcript_id AT1G58250.1  
At1g58260	chr1:021605752	0.0	W/21605752-21606696,21606863-21607136,21607622-21607995	AT1G58260.1  CDS  gene_syn CYP79C2, CYP79C3P, CYTOCHROME P450 79C2, F19C14.12, F19C14_12  gene CYP79C2  function member of CYP79C subfamily of cytochrome p450s. Encodes a putative xylan endohydrolase. similar to some closely linked pseudogenes.  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process biological_process|GO:0008150||ND  go_function oxygen binding|GO:0019825||ISS  product CYP79C2 (CYTOCHROME P450 79C2); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYTOCHROME P450 79C2 (CYP79C2); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP79C1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G79370.1); Has 21292 Blast hits to 21159 proteins in 1146 species: Archae - 20; Bacteria - 1527; Metazoa - 9865; Fungi - 3698; Plants - 5483; Viruses - 3; Other Eukaryotes - 696 (source: NCBI BLink).  protein_id AT1G58260.1p  transcript_id AT1G58260.1  protein_id AT1G58260.1p  transcript_id AT1G58260.1  
At1g58265	chr1:021610909	0.0	W/21610909-21611388	AT1G58265.1  CDS  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product cytochrome P450-related  note cytochrome P450-related; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, heme binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP79C2 (CYTOCHROME P450 79C2); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G58260.1); Has 3334 Blast hits to 3333 proteins in 298 species: Archae - 0; Bacteria - 18; Metazoa - 424; Fungi - 29; Plants - 2847; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G58265.1p  transcript_id AT1G58265.1  protein_id AT1G58265.1p  transcript_id AT1G58265.1  
At1g58270	chr1:021613701	0.0	C/21613701-21614089,21613316-21613485,21612940-21613222,21612700-21612851,21612394-21612590	AT1G58270.1  CDS  gene_syn F19C14.11, F19C14_11, ZW9  gene ZW9  function ZW9 mRNA, complete cds  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ZW9  note ZW9; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT3G28220.1); Has 515 Blast hits to 445 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 2; Plants - 336; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT1G58270.1p  transcript_id AT1G58270.1  protein_id AT1G58270.1p  transcript_id AT1G58270.1  
At1g58280	chr1:021622345	0.0	C/21622345-21622468,21622130-21622191,21621942-21622049,21621668-21621747,21621187-21621499,21621014-21621102,21620801-21620920,21620678-21620722,21620497-21620587	AT1G58280.2  CDS  gene_syn F19C14.10, F19C14_10  go_component chloroplast|GO:0009507|18431481|IDA  product unknown protein  note LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64460.6); Has 209 Blast hits to 206 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 84; Plants - 67; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT1G58280.2p  transcript_id AT1G58280.2  protein_id AT1G58280.2p  transcript_id AT1G58280.2  
At1g58280	chr1:021622345	0.0	C/21622345-21622468,21622130-21622191,21621942-21622049,21621668-21621747,21621337-21621499,21621187-21621261,21621014-21621102,21620801-21620920,21620678-21620722,21620497-21620587	AT1G58280.1  CDS  gene_syn F19C14.10, F19C14_10  go_component chloroplast|GO:0009507|18431481|IDA  product unknown protein  note LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64460.6); Has 337 Blast hits to 337 proteins in 68 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 175; Plants - 69; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT1G58280.1p  transcript_id AT1G58280.1  protein_id AT1G58280.1p  transcript_id AT1G58280.1  
At1g58280	chr1:021622550	0.0	C/21622550-21622611,21622345-21622361,21622130-21622191,21621942-21622049,21621668-21621747,21621337-21621499,21621187-21621261,21621014-21621102,21620801-21620920,21620678-21620722,21620497-21620587	AT1G58280.3  CDS  gene_syn F19C14.10, F19C14_10  product unknown protein  note CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64460.6).  protein_id AT1G58280.3p  transcript_id AT1G58280.3  protein_id AT1G58280.3p  transcript_id AT1G58280.3  
At1g58290	chr1:021625787	0.0	C/21625787-21626051,21625393-21625634,21624028-21625152	AT1G58290.1  CDS  gene_syn F19C14.9, F19C14_9, HEMA1  gene HEMA1  function Encodes a protein with glutamyl-tRNA reductase (GluTR) activity, catalyzing the NADPH-dependent reduction of Glu-tRNA(Glu) to glutamate 1-semialdehyde (GSA) with the release of free tRNA(Glu). It is involved in the early steps of chlorophyll biosynthesis.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|12445126|TAS  go_process porphyrin biosynthetic process|GO:0006779|7908550|TAS  go_process heme biosynthetic process|GO:0006783|10631248|IMP  go_process response to light stimulus|GO:0009416|7908550|IEP  go_process chlorophyll biosynthetic process|GO:0015995|10631248|IMP  go_function glutamyl-tRNA reductase activity|GO:0008883|10631248|TAS  go_function glutamyl-tRNA reductase activity|GO:0008883|7908550|IGI  product HEMA1; glutamyl-tRNA reductase  note HEMA1; FUNCTIONS IN: glutamyl-tRNA reductase activity; INVOLVED IN: chlorophyll biosynthetic process, heme biosynthetic process, response to light stimulus, porphyrin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase (InterPro:IPR006151), Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, conserved site (InterPro:IPR018214), Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, C-terminal (InterPro:IPR015896), NAD(P)-binding (InterPro:IPR016040), Tetrapyrrole biosynthesis, glutamyl-tRNA reductase (InterPro:IPR000343), Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal (InterPro:IPR015895); BEST Arabidopsis thaliana protein match is: HEMA2; glutamyl-tRNA reductase (TAIR:AT1G09940.1); Has 3345 Blast hits to 3342 proteins in 1024 species: Archae - 154; Bacteria - 2062; Metazoa - 0; Fungi - 0; Plants - 194; Viruses - 0; Other Eukaryotes - 935 (source: NCBI BLink).  protein_id AT1G58290.1p  transcript_id AT1G58290.1  protein_id AT1G58290.1p  transcript_id AT1G58290.1  
At1g58300	chr1:021629570	0.0	C/21629570-21629996,21628373-21628596,21628194-21628301,21628015-21628107	AT1G58300.1  CDS  gene_syn F19C14.8, F19C14_8, HEME OXYGENASE 4, ho4  gene ho4  function Encodes a member (HO4) of the heme oxygenase family.  go_function heme oxygenase (decyclizing) activity|GO:0004392|16428602|IDA  go_function oxidoreductase activity|GO:0016491||ISS  product ho4 (HEME OXYGENASE 4); heme oxygenase (decyclizing)/ oxidoreductase  note HEME OXYGENASE 4 (ho4); FUNCTIONS IN: heme oxygenase (decyclizing) activity, oxidoreductase activity; EXPRESSED IN: 7 plant structures; CONTAINS InterPro DOMAIN/s: Haem oxygenase-like, multi-helical (InterPro:IPR016084), Haem oxygenase (decyclizing), plant (InterPro:IPR016951); BEST Arabidopsis thaliana protein match is: ho3 (HEME OXYGENASE 3); heme oxygenase (decyclizing) (TAIR:AT1G69720.1); Has 219 Blast hits to 219 proteins in 46 species: Archae - 0; Bacteria - 65; Metazoa - 11; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT1G58300.1p  transcript_id AT1G58300.1  protein_id AT1G58300.1p  transcript_id AT1G58300.1  
At1g58310	chr1:021631947	0.0	W/21631947-21632936,21633043-21633183,21633256-21633642	AT1G58310.1  CDS  gene_syn F19C14.7, F19C14_7  go_process biological_process|GO:0008150||ND  product F-box family protein  note F-box family protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14096.1); Has 1279 Blast hits to 1240 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1279; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G58310.1p  transcript_id AT1G58310.1  protein_id AT1G58310.1p  transcript_id AT1G58310.1  
At1g58320	chr1:021635210	0.0	C/21635210-21635303,21635028-21635099,21634309-21634518,21634123-21634193	AT1G58320.1  CDS  gene_syn F19C14.14, F19C14_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35525.1); Has 377 Blast hits to 376 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 58; Plants - 287; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G58320.1p  transcript_id AT1G58320.1  protein_id AT1G58320.1p  transcript_id AT1G58320.1  
At1g58330	chr1:021641150	0.0	W/21641150-21641827	AT1G58330.1  CDS  gene_syn F19C14.6, F19C14_6, ZW2  gene ZW2  product ZW2  note ZW2; BEST Arabidopsis thaliana protein match is: transcription factor-related (TAIR:AT1G09950.1); Has 353 Blast hits to 352 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 353; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G58330.1p  transcript_id AT1G58330.1  protein_id AT1G58330.1p  transcript_id AT1G58330.1  
At1g58340	chr1:021653162	0.0	W/21653162-21653323,21653681-21655117	AT1G58340.1  CDS  gene_syn F19C14.5, F19C14_5, ZF14  gene ZF14  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020|11152613|ISS  go_process response to nematode|GO:0009624|16478044|IEP  go_function transporter activity|GO:0005215||ISS  product ZF14; antiporter/ drug transporter/ transporter  note ZF14; FUNCTIONS IN: drug transporter activity, antiporter activity, transporter activity; INVOLVED IN: response to nematode; LOCATED IN: membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux protein-related (TAIR:AT4G23030.1); Has 5745 Blast hits to 5688 proteins in 1072 species: Archae - 134; Bacteria - 3741; Metazoa - 125; Fungi - 206; Plants - 680; Viruses - 0; Other Eukaryotes - 859 (source: NCBI BLink).  protein_id AT1G58340.1p  transcript_id AT1G58340.1  protein_id AT1G58340.1p  transcript_id AT1G58340.1  
At1g58350	chr1:021666655	0.0	C/21666655-21666827,21666488-21666573,21666197-21666351,21665825-21666078,21665672-21665726,21665352-21665570,21665128-21665261,21664825-21665005,21664685-21664744,21664352-21664600,21663992-21664250,21663704-21663909,21663553-21663603,21663131-21663433	AT1G58350.1  CDS  gene_syn F19C14.4, F19C14_4, ZW18  gene ZW18  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  product ZW18  note ZW18; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF676, hydrolase-like (InterPro:IPR007751); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09980.1); Has 349 Blast hits to 283 proteins in 69 species: Archae - 0; Bacteria - 0; Metazoa - 218; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT1G58350.1p  transcript_id AT1G58350.1  protein_id AT1G58350.1p  transcript_id AT1G58350.1  
At1g58350	chr1:021666655	0.0	C/21666655-21666827,21666488-21666573,21666197-21666351,21665825-21666078,21665672-21665726,21665352-21665570,21665128-21665261,21664825-21665005,21664685-21664744,21664352-21664600,21663992-21664250,21663704-21663909,21663553-21663603,21663131-21663433	AT1G58350.2  CDS  gene_syn F19C14.4, F19C14_4, ZW18  gene ZW18  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  product ZW18  note ZW18; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF676, hydrolase-like (InterPro:IPR007751); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09980.1); Has 349 Blast hits to 283 proteins in 69 species: Archae - 0; Bacteria - 0; Metazoa - 218; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT1G58350.2p  transcript_id AT1G58350.2  protein_id AT1G58350.2p  transcript_id AT1G58350.2  
At1g58360	chr1:021676623	0.0	W/21676623-21676971,21678165-21678258,21678401-21678615,21678794-21678936,21679569-21679796,21679885-21680313	AT1G58360.1  CDS  gene_syn AAP1, AMINO ACID PERMEASE 1, NAT2, NEUTRAL AMINO ACID TRANSPORTER 2  gene AAP1  function neutral amino acid transporter expressed in seeds  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17419840|IDA  go_component plasma membrane|GO:0005886|9374550|IDA  go_process response to nematode|GO:0009624|16478044|IEP  go_process neutral amino acid transport|GO:0015804|8356039|IGI  go_function amino acid transmembrane transporter activity|GO:0015171|17419840|IMP  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  go_function neutral amino acid transmembrane transporter activity|GO:0015175|8356039|IGI  product AAP1 (AMINO ACID PERMEASE 1); amino acid transmembrane transporter/ neutral amino acid transmembrane transporter  note AMINO ACID PERMEASE 1 (AAP1); FUNCTIONS IN: neutral amino acid transmembrane transporter activity, amino acid transmembrane transporter activity; INVOLVED IN: neutral amino acid transport, response to nematode; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: AAP8; amino acid transmembrane transporter (TAIR:AT1G10010.1); Has 1445 Blast hits to 1438 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 364; Fungi - 268; Plants - 706; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT1G58360.1p  transcript_id AT1G58360.1  protein_id AT1G58360.1p  transcript_id AT1G58360.1  
At1g58370	chr1:021684751	0.0	W/21684751-21684780,21684912-21685291,21685361-21685514,21685678-21686021,21686104-21686281,21686478-21687017,21687082-21688209	AT1G58370.1  CDS  gene_syn ARABIDOPSIS THALIANA XYLANASE 1, ATXYN1, F9K23.10, RXF12  gene RXF12  function Encodes a protein with xylanase activity.  go_process carbohydrate metabolic process|GO:0005975||IEA  go_component cell wall|GO:0005618|12154138|IDA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function endo-1,4-beta-xylanase activity|GO:0031176|12154138|IDA  product RXF12; endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds  note RXF12; FUNCTIONS IN: endo-1,4-beta-xylanase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Carbohydrate-binding, CenC-like (InterPro:IPR003305), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (TAIR:AT1G10050.1); Has 1556 Blast hits to 1402 proteins in 283 species: Archae - 0; Bacteria - 781; Metazoa - 46; Fungi - 278; Plants - 216; Viruses - 0; Other Eukaryotes - 235 (source: NCBI BLink).  protein_id AT1G58370.1p  transcript_id AT1G58370.1  protein_id AT1G58370.1p  transcript_id AT1G58370.1  
At1g58380	chr1:021689115	0.0	W/21689115-21689807,21689924-21690085	AT1G58380.1  CDS  gene_syn F9K23.9, F9K23_9, XW6  gene XW6  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product XW6; structural constituent of ribosome  note XW6; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, plasma membrane, chloroplast, membrane; EXPRESSED IN: guard cell, pollen tube, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5, eukaryotic/archaeal (InterPro:IPR005711), Double-stranded RNA-binding-like (InterPro:IPR014720), Ribosomal protein S5, C-terminal (InterPro:IPR005324), Ribosomal protein S5 (InterPro:IPR000851), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721), Ribosomal protein S5, N-terminal, conserved site (InterPro:IPR018192), Ribosomal protein S5, N-terminal (InterPro:IPR013810); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S2 (RPS2B) (TAIR:AT1G59359.1); Has 7963 Blast hits to 7153 proteins in 1715 species: Archae - 183; Bacteria - 3057; Metazoa - 1443; Fungi - 466; Plants - 299; Viruses - 25; Other Eukaryotes - 2490 (source: NCBI BLink).  protein_id AT1G58380.1p  transcript_id AT1G58380.1  protein_id AT1G58380.1p  transcript_id AT1G58380.1  
At1g58390	chr1:021693015	0.0	C/21693015-21693891,21692795-21692941,21690962-21692661	AT1G58390.1  CDS  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative  note disease resistance protein (CC-NBS-LRR class), putative; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT1G58400.1); Has 9720 Blast hits to 9354 proteins in 360 species: Archae - 4; Bacteria - 344; Metazoa - 258; Fungi - 74; Plants - 8974; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT1G58390.1p  transcript_id AT1G58390.1  protein_id AT1G58390.1p  transcript_id AT1G58390.1  
At1g58400	chr1:021698239	0.0	C/21698239-21699118,21698021-21698137,21696165-21697870	AT1G58400.1  CDS  gene_syn F9K23.7, F9K23_7  go_process apoptosis|GO:0006915||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative  note disease resistance protein (CC-NBS-LRR class), putative; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT1G58410.1); Has 10560 Blast hits to 9857 proteins in 355 species: Archae - 2; Bacteria - 266; Metazoa - 774; Fungi - 37; Plants - 9354; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).  protein_id AT1G58400.1p  transcript_id AT1G58400.1  protein_id AT1G58400.1p  transcript_id AT1G58400.1  
At1g58410	chr1:021703382	0.0	C/21703382-21704255,21703135-21703281,21701286-21702964	AT1G58410.1  CDS  gene_syn F9K23.6, F9K23_6  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative  note disease resistance protein (CC-NBS-LRR class), putative; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT1G58400.1); Has 10474 Blast hits to 9879 proteins in 404 species: Archae - 4; Bacteria - 474; Metazoa - 929; Fungi - 89; Plants - 8885; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT1G58410.1p  transcript_id AT1G58410.1  protein_id AT1G58410.1p  transcript_id AT1G58410.1  
At1g58420	chr1:021707407	0.0	W/21707407-21707946	AT1G58420.1  CDS  gene_syn F9K23.5, F9K23_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031279 (InterPro:IPR016972); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10140.1); Has 28 Blast hits to 28 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G58420.1p  transcript_id AT1G58420.1  protein_id AT1G58420.1p  transcript_id AT1G58420.1  
At1g58430	chr1:021712363	0.0	C/21712363-21712992,21711980-21712238,21711684-21711877	AT1G58430.1  CDS  gene_syn F9K23.4, F9K23_4, RXF15, RXF26  gene RXF26  function Encodes an anther-specific proline-rich protein.  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product RXF26; carboxylesterase/ hydrolase, acting on ester bonds  note RXF26; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: carboxylesterase/ hydrolase, acting on ester bonds (TAIR:AT2G24560.1); Has 1881 Blast hits to 1866 proteins in 179 species: Archae - 0; Bacteria - 281; Metazoa - 1; Fungi - 11; Plants - 1568; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT1G58430.1p  transcript_id AT1G58430.1  protein_id AT1G58430.1p  transcript_id AT1G58430.1  
At1g58440	chr1:021717004	0.0	C/21717004-21717246,21716073-21716184,21715797-21715971,21715361-21715529,21715022-21715240,21714654-21714929,21714299-21714577,21714094-21714216	AT1G58440.1  CDS  gene_syn F9K23.3, F9K23_3, SQE1, SQUALENE EPOXIDASE 1, XF1  gene XF1  function Encodes a putative protein that has been speculated, based on sequence similarities, to have squalene monooxygenase activity.  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process response to water deprivation|GO:0009414|19309460|IMP  go_process sterol biosynthetic process|GO:0016126|10350086|TAS  go_process sterol biosynthetic process|GO:0016126|19309460|IMP  go_function squalene monooxygenase activity|GO:0004506|17426032|IGI  product XF1; squalene monooxygenase  note XF1; FUNCTIONS IN: squalene monooxygenase activity; INVOLVED IN: response to water deprivation, sterol biosynthetic process; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Squalene epoxidase (InterPro:IPR013698), Aromatic-ring hydroxylase-like (InterPro:IPR003042), FAD dependent oxidoreductase (InterPro:IPR006076); BEST Arabidopsis thaliana protein match is: SQE3 (squalene epoxidase 3); squalene monooxygenase (TAIR:AT4G37760.1); Has 1301 Blast hits to 1301 proteins in 489 species: Archae - 27; Bacteria - 774; Metazoa - 96; Fungi - 147; Plants - 82; Viruses - 0; Other Eukaryotes - 175 (source: NCBI BLink).  protein_id AT1G58440.1p  transcript_id AT1G58440.1  protein_id AT1G58440.1p  transcript_id AT1G58440.1  
At1g58450	chr1:021718014	0.0	W/21718014-21718118,21718214-21718357,21718589-21718716,21718799-21718916	AT1G58450.1  CDS  gene_syn F9K23.2, F9K23_2  go_process protein folding|GO:0006457||IEA  go_function binding|GO:0005488||IEA  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product peptidyl-prolyl cis-trans isomerase FKBP-type family protein  note peptidyl-prolyl cis-trans isomerase FKBP-type family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity, binding; INVOLVED IN: protein folding; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026), Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: ROF1 (ROTAMASE FKBP 1); FK506 binding / calmodulin binding / peptidyl-prolyl cis-trans isomerase (TAIR:AT3G25230.2); Has 2891 Blast hits to 2744 proteins in 213 species: Archae - 0; Bacteria - 31; Metazoa - 1823; Fungi - 256; Plants - 292; Viruses - 0; Other Eukaryotes - 489 (source: NCBI BLink).  protein_id AT1G58450.1p  transcript_id AT1G58450.1  protein_id AT1G58450.1p  transcript_id AT1G58450.1  
At1g58460	chr1:021721404	0.0	W/21721404-21721739,21721889-21721987,21722140-21722206,21722398-21722429	AT1G58460.1  CDS  gene_syn F9K23.1, F9K23_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 14 Blast hits to 14 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G58460.1p  transcript_id AT1G58460.1  protein_id AT1G58460.1p  transcript_id AT1G58460.1  
At1g58470	chr1:021727374	0.0	W/21727374-21727595,21727679-21728539	AT1G58470.1  CDS  gene_syn ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 1, ATRBP1, F9K23.11, F9K23_11, RBP1, RNA-BINDING PROTEIN 1  gene ATRBP1  function encodes an RNA-binding protein  go_process cell proliferation|GO:0008283|10805591|TAS  go_function RNA binding|GO:0003723||ISS  go_function single-stranded RNA binding|GO:0003727|10805591|IDA  product ATRBP1 (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 1); RNA binding / single-stranded RNA binding  note ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 1 (ATRBP1); FUNCTIONS IN: single-stranded RNA binding, RNA binding; INVOLVED IN: cell proliferation; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT4G26650.2); Has 19398 Blast hits to 12384 proteins in 583 species: Archae - 0; Bacteria - 1258; Metazoa - 11384; Fungi - 1645; Plants - 3275; Viruses - 0; Other Eukaryotes - 1836 (source: NCBI BLink).  protein_id AT1G58470.1p  transcript_id AT1G58470.1  protein_id AT1G58470.1p  transcript_id AT1G58470.1  
At1g58520	chr1:021729913	0.0	W/21729913-21730156,21730250-21730380,21730469-21730693,21730796-21731051,21731163-21731180,21733418-21733454,21733626-21733823,21733921-21734067,21734171-21734294,21734362-21734568,21735198-21735392,21735818-21736116,21736338-21736614,21736941-21737216,21737511-21737744,21737830-21738007,21738086-21738165	AT1G58520.2  CDS  gene_syn RXW8  gene RXW8  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function lipase activity|GO:0016298||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  product hydrolase, acting on ester bonds / lipase  note RXW8; FUNCTIONS IN: hydrolase activity, acting on ester bonds, lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864), Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10090.1).  protein_id AT1G58520.2p  transcript_id AT1G58520.2  protein_id AT1G58520.2p  transcript_id AT1G58520.2  
At1g58520	chr1:021729913	0.0	W/21729913-21730156,21730250-21730380,21730469-21730693,21730796-21731051,21731172-21731344	AT1G58520.3  CDS  gene_syn RXW8  gene RXW8  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function lipase activity|GO:0016298||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  product hydrolase, acting on ester bonds / lipase  note RXW8; FUNCTIONS IN: hydrolase activity, acting on ester bonds, lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase, putative (TAIR:AT1G59406.1).  protein_id AT1G58520.3p  transcript_id AT1G58520.3  protein_id AT1G58520.3p  transcript_id AT1G58520.3  
At1g58520	chr1:021733543	0.0	W/21733543-21733823,21733921-21734067,21734171-21734234,21734359-21734568,21735198-21735392,21735818-21736116,21736338-21736614,21736941-21737216,21737511-21737744,21737830-21738007,21738086-21738165	AT1G58520.1  CDS  gene_syn RXW8  gene RXW8  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  product unknown protein  note RXW8; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10090.1); Has 898 Blast hits to 839 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 158; Fungi - 430; Plants - 240; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT1G58520.1p  transcript_id AT1G58520.1  protein_id AT1G58520.1p  transcript_id AT1G58520.1  
At1g58590	chr1:021742944	0.0	C/21742944-21743877	AT1G58590.2  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G58590.2  
At1g58590	chr1:021743159	0.0	C/21743159-21743891	AT1G58590.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G58590.1  
At1g58561	chr1:021748675	0.0	W/21748675-21753246	AT1G58561.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 3.8e-219 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)  
At1g58602	chr1:021760167	0.0	W/21760167-21761055,21761146-21761292,21761385-21763765	AT1G58602.1  CDS  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product ATP binding / protein binding  note ATP binding / protein binding; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: defense response, apoptosis; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT1G59218.1); Has 11919 Blast hits to 10044 proteins in 398 species: Archae - 6; Bacteria - 401; Metazoa - 504; Fungi - 66; Plants - 10803; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).  protein_id AT1G58602.1p  transcript_id AT1G58602.1  protein_id AT1G58602.1p  transcript_id AT1G58602.1  
At1g58602	chr1:021760167	0.0	W/21760167-21761055,21761146-21761292,21761385-21763765	AT1G58602.2  CDS  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product ATP binding / protein binding  note ATP binding / protein binding; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: defense response, apoptosis; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT1G59218.1); Has 11919 Blast hits to 10044 proteins in 398 species: Archae - 6; Bacteria - 401; Metazoa - 504; Fungi - 66; Plants - 10803; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).  protein_id AT1G58602.2p  transcript_id AT1G58602.2  protein_id AT1G58602.2p  transcript_id AT1G58602.2  
At1g58643	chr1:021767342	0.0	W/21767342-21767551,21767680-21767886,21768008-21768155,21768314-21768357,21768449-21768559,21768633-21769241,21769325-21769456	AT1G58643.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function ATP binding|GO:0005524||IEA  go_function inositol pentakisphosphate 2-kinase activity|GO:0035299||IEA  go_process biological_process|GO:0008150||ND  product ATP binding / inositol pentakisphosphate 2-kinase  note ATP binding / inositol pentakisphosphate 2-kinase; FUNCTIONS IN: inositol pentakisphosphate 2-kinase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Inositol-pentakisphosphate 2-kinase, metazoa (InterPro:IPR018009), Inositol-pentakisphosphate 2-kinase (InterPro:IPR009286); BEST Arabidopsis thaliana protein match is: ATP binding / inositol pentakisphosphate 2-kinase (TAIR:AT1G59312.1); Has 172 Blast hits to 151 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 12; Plants - 49; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G58643.1p  transcript_id AT1G58643.1  protein_id AT1G58643.1p  transcript_id AT1G58643.1  
At1g58684	chr1:021770525	0.0	C/21770525-21771217,21770021-21770182	AT1G58684.1  CDS  go_component cell wall|GO:0005618|16287169|IDA  go_process translation|GO:0006412||IEA  go_function RNA binding|GO:0003723||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component intracellular|GO:0005622||ISS  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S2, putative  note 40S ribosomal protein S2, putative; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome, cell wall, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5, eukaryotic/archaeal (InterPro:IPR005711), Ribosomal protein S5, N-terminal (InterPro:IPR013810), Double-stranded RNA-binding-like (InterPro:IPR014720), Ribosomal protein S5, C-terminal (InterPro:IPR005324), Ribosomal protein S5 (InterPro:IPR000851), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721), Ribosomal protein S5, N-terminal, conserved site (InterPro:IPR018192); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S2 (RPS2B) (TAIR:AT1G59359.1); Has 7466 Blast hits to 6900 proteins in 1700 species: Archae - 183; Bacteria - 2971; Metazoa - 1235; Fungi - 383; Plants - 223; Viruses - 14; Other Eukaryotes - 2457 (source: NCBI BLink).  protein_id AT1G58684.1p  transcript_id AT1G58684.1  protein_id AT1G58684.1p  transcript_id AT1G58684.1  
At1g58725	chr1:021773122	0.0	C/21773122-21773251,21772901-21773031,21772589-21772813,21772400-21772487,21772232-21772312,21771935-21772128	AT1G58725.1  CDS  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_component cellular_component|GO:0005575||ND  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298||ISS  product GDSL-motif lipase, putative  note GDSL-motif lipase, putative; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase, putative (TAIR:AT3G43570.1); Has 1535 Blast hits to 1520 proteins in 87 species: Archae - 0; Bacteria - 65; Metazoa - 1; Fungi - 0; Plants - 1467; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G58725.1p  transcript_id AT1G58725.1  protein_id AT1G58725.1p  transcript_id AT1G58725.1  
At1g58766	chr1:021775514	0.0	C/21775514-21776765,21775358-21775416,21774781-21775242,21774657-21774695,21774386-21774571	AT1G58766.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: transcription factor-related (TAIR:AT1G59453.1); Has 32 Blast hits to 28 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G58766.1p  transcript_id AT1G58766.1  protein_id AT1G58766.1p  transcript_id AT1G58766.1  
At1g58807	chr1:021780574	0.0	W/21780574-21781450,21781529-21781675,21781764-21783289,21783378-21783395	AT1G58807.2  CDS  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative / PRM1 homolog, putative  note disease resistance protein (CC-NBS-LRR class), putative / PRM1 homolog, putative; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative / PRM1 homolog, putative (TAIR:AT1G59124.1); Has 10305 Blast hits to 9885 proteins in 393 species: Archae - 4; Bacteria - 492; Metazoa - 515; Fungi - 66; Plants - 9123; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT1G58807.2p  transcript_id AT1G58807.2  protein_id AT1G58807.2p  transcript_id AT1G58807.2  
At1g58807	chr1:021780574	0.0	W/21780574-21781450,21781529-21781675,21781764-21783793	AT1G58807.1  CDS  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative / PRM1 homolog, putative  note disease resistance protein (CC-NBS-LRR class), putative / PRM1 homolog, putative; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT1G59218.1); Has 11048 Blast hits to 10131 proteins in 401 species: Archae - 4; Bacteria - 518; Metazoa - 544; Fungi - 66; Plants - 9798; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).  protein_id AT1G58807.1p  transcript_id AT1G58807.1  protein_id AT1G58807.1p  transcript_id AT1G58807.1  
At1g58808	chr1:021784645	0.0	W/21784645-21786869	AT1G58808.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G58808.1  
At1g58848	chr1:021792140	0.0	W/21792140-21793016,21793095-21793241,21793330-21795455	AT1G58848.1  CDS  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product ATP binding / protein binding  note ATP binding / protein binding; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: defense response, apoptosis; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT1G59218.1); Has 11880 Blast hits to 10235 proteins in 407 species: Archae - 4; Bacteria - 551; Metazoa - 496; Fungi - 68; Plants - 10621; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink).  protein_id AT1G58848.1p  transcript_id AT1G58848.1  protein_id AT1G58848.1p  transcript_id AT1G58848.1  
At1g58848	chr1:021792140	0.0	W/21792140-21793016,21793095-21793241,21793330-21795455	AT1G58848.2  CDS  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product ATP binding / protein binding  note ATP binding / protein binding; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: defense response, apoptosis; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT1G59218.1); Has 11880 Blast hits to 10235 proteins in 407 species: Archae - 4; Bacteria - 551; Metazoa - 496; Fungi - 68; Plants - 10621; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink).  protein_id AT1G58848.2p  transcript_id AT1G58848.2  protein_id AT1G58848.2p  transcript_id AT1G58848.2  
At1g58889	chr1:021797094	0.0	C/21797094-21801662	AT1G58889.1  mRNA_TE_gene  pseudo  gene_syn T4M14.20, T4M14_20  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element)  
At1g58936	chr1:021803600	0.0	W/21803600-21803809,21803938-21804144,21804266-21804413,21804572-21804615,21804707-21804817,21804891-21805499,21805583-21805714	AT1G58936.1  CDS  gene_syn T4M14.4, T4M14_4  go_component endomembrane system|GO:0012505||IEA  go_function ATP binding|GO:0005524||IEA  go_function inositol pentakisphosphate 2-kinase activity|GO:0035299||IEA  go_process biological_process|GO:0008150||ND  product ATP binding / inositol pentakisphosphate 2-kinase  note ATP binding / inositol pentakisphosphate 2-kinase; FUNCTIONS IN: inositol pentakisphosphate 2-kinase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Inositol-pentakisphosphate 2-kinase, metazoa (InterPro:IPR018009), Inositol-pentakisphosphate 2-kinase (InterPro:IPR009286); BEST Arabidopsis thaliana protein match is: ATP binding / inositol pentakisphosphate 2-kinase (TAIR:AT1G59312.1); Has 172 Blast hits to 151 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 12; Plants - 49; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G58936.1p  transcript_id AT1G58936.1  protein_id AT1G58936.1p  transcript_id AT1G58936.1  
At1g58983	chr1:021806783	0.0	C/21806783-21807475,21806279-21806440	AT1G58983.1  CDS  gene_syn T4M14.1  go_component cell wall|GO:0005618|16287169|IDA  go_process translation|GO:0006412||IEA  go_function RNA binding|GO:0003723||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S2, putative  note 40S ribosomal protein S2, putative; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome, cell wall; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5, eukaryotic/archaeal (InterPro:IPR005711), Ribosomal protein S5, N-terminal (InterPro:IPR013810), Double-stranded RNA-binding-like (InterPro:IPR014720), Ribosomal protein S5, C-terminal (InterPro:IPR005324), Ribosomal protein S5 (InterPro:IPR000851), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721), Ribosomal protein S5, N-terminal, conserved site (InterPro:IPR018192); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S2 (RPS2B) (TAIR:AT1G59359.1); Has 7466 Blast hits to 6900 proteins in 1700 species: Archae - 183; Bacteria - 2971; Metazoa - 1235; Fungi - 383; Plants - 223; Viruses - 14; Other Eukaryotes - 2457 (source: NCBI BLink).  protein_id AT1G58983.1p  transcript_id AT1G58983.1  protein_id AT1G58983.1p  transcript_id AT1G58983.1  
At1g59030	chr1:021809380	0.0	C/21809380-21809509,21809159-21809289,21808847-21809071,21808490-21808745,21808193-21808386	AT1G59030.1  CDS  gene_syn T4M14.19  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_component cellular_component|GO:0005575||ND  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298||ISS  product carboxylesterase/ hydrolase, acting on ester bonds / lipase  note carboxylesterase/ hydrolase, acting on ester bonds / lipase; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase, putative (TAIR:AT1G59406.1); Has 1650 Blast hits to 1635 proteins in 104 species: Archae - 0; Bacteria - 100; Metazoa - 1; Fungi - 2; Plants - 1538; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G59030.1p  transcript_id AT1G59030.1  protein_id AT1G59030.1p  transcript_id AT1G59030.1  
At1g59077	chr1:021811772	0.0	C/21811772-21813023,21811616-21811674,21811039-21811500,21810915-21810953,21810644-21810829	AT1G59077.1  CDS  gene_syn T4M14.2, T4M14_2  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: transcription factor-related (TAIR:AT1G59453.1); Has 32 Blast hits to 28 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G59077.1p  transcript_id AT1G59077.1  protein_id AT1G59077.1p  transcript_id AT1G59077.1  
At1g59124	chr1:021816832	0.0	W/21816832-21817708,21817787-21817933,21818022-21819547,21819636-21819653	AT1G59124.1  CDS  gene_syn T4M14.5, T4M14_5  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative / PRM1 homolog, putative  note disease resistance protein (CC-NBS-LRR class), putative / PRM1 homolog, putative; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative / PRM1 homolog, putative (TAIR:AT1G58807.2); Has 10305 Blast hits to 9885 proteins in 393 species: Archae - 4; Bacteria - 492; Metazoa - 515; Fungi - 66; Plants - 9123; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT1G59124.1p  transcript_id AT1G59124.1  protein_id AT1G59124.1p  transcript_id AT1G59124.1  
At1g59171	chr1:021822248	0.0	W/21822248-21822319,21822426-21822548	AT1G59171.2  CDS  gene_syn T4M14.6, T4M14_6  go_function ATP binding|GO:0005524||IEA  go_function inositol pentakisphosphate 2-kinase activity|GO:0035299||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product ATP binding / inositol pentakisphosphate 2-kinase  note ATP binding / inositol pentakisphosphate 2-kinase; FUNCTIONS IN: inositol pentakisphosphate 2-kinase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Inositol-pentakisphosphate 2-kinase, metazoa (InterPro:IPR018009); BEST Arabidopsis thaliana protein match is: ATP binding / inositol pentakisphosphate 2-kinase (TAIR:AT1G22100.1); Has 30 Blast hits to 20 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G59171.2p  transcript_id AT1G59171.2  protein_id AT1G59171.2p  transcript_id AT1G59171.2  
At1g59171	chr1:021822248	0.0	W/21822248-21822352,21822426-21822548	AT1G59171.1  CDS  gene_syn T4M14.6, T4M14_6  go_function ATP binding|GO:0005524||IEA  go_function inositol pentakisphosphate 2-kinase activity|GO:0035299||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product ATP binding / inositol pentakisphosphate 2-kinase  note ATP binding / inositol pentakisphosphate 2-kinase; FUNCTIONS IN: inositol pentakisphosphate 2-kinase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Inositol-pentakisphosphate 2-kinase, metazoa (InterPro:IPR018009); BEST Arabidopsis thaliana protein match is: ATP binding / inositol pentakisphosphate 2-kinase (TAIR:AT1G59312.1); Has 49 Blast hits to 31 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G59171.1p  transcript_id AT1G59171.1  protein_id AT1G59171.1p  transcript_id AT1G59171.1  
At1g59218	chr1:021828398	0.0	W/21828398-21829274,21829353-21829499,21829588-21831713	AT1G59218.1  CDS  gene_syn T4M14.7, T4M14_7  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative  note disease resistance protein (CC-NBS-LRR class), putative; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: defense response, apoptosis; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: ATP binding / protein binding (TAIR:AT1G58848.2); Has 11880 Blast hits to 10235 proteins in 407 species: Archae - 4; Bacteria - 551; Metazoa - 496; Fungi - 68; Plants - 10621; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink).  protein_id AT1G59218.1p  transcript_id AT1G59218.1  protein_id AT1G59218.1p  transcript_id AT1G59218.1  
At1g59265	chr1:021833352	0.0	C/21833352-21837779	AT1G59265.1  mRNA_TE_gene  pseudo  gene_syn T4M14.18, T4M14_18  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element)  
At1g59312	chr1:021839858	0.0	W/21839858-21840067,21840196-21840402,21840524-21840671,21840830-21840873,21840965-21841075,21841149-21841757,21841841-21841972	AT1G59312.1  CDS  gene_syn T4M14.8  go_component endomembrane system|GO:0012505||IEA  go_function ATP binding|GO:0005524||IEA  go_function inositol pentakisphosphate 2-kinase activity|GO:0035299||IEA  go_process biological_process|GO:0008150||ND  product ATP binding / inositol pentakisphosphate 2-kinase  note ATP binding / inositol pentakisphosphate 2-kinase; FUNCTIONS IN: inositol pentakisphosphate 2-kinase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Inositol-pentakisphosphate 2-kinase, metazoa (InterPro:IPR018009), Inositol-pentakisphosphate 2-kinase (InterPro:IPR009286); BEST Arabidopsis thaliana protein match is: ATP binding / inositol pentakisphosphate 2-kinase (TAIR:AT1G58936.1); Has 172 Blast hits to 151 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 12; Plants - 49; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G59312.1p  transcript_id AT1G59312.1  protein_id AT1G59312.1p  transcript_id AT1G59312.1  
At1g59359	chr1:021843041	0.0	C/21843041-21843733,21842537-21842698	AT1G59359.1  CDS  gene_syn T4M14.3, T4M14_3  go_component cell wall|GO:0005618|16287169|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S2 (RPS2B)  note 40S ribosomal protein S2 (RPS2B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cell wall, membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5, eukaryotic/archaeal (InterPro:IPR005711), Double-stranded RNA-binding-like (InterPro:IPR014720), Ribosomal protein S5, C-terminal (InterPro:IPR005324), Ribosomal protein S5 (InterPro:IPR000851), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721), Ribosomal protein S5, N-terminal (InterPro:IPR013810), Ribosomal protein S5, N-terminal, conserved site (InterPro:IPR018192); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S2, putative (TAIR:AT1G58983.1); Has 7466 Blast hits to 6900 proteins in 1700 species: Archae - 183; Bacteria - 2971; Metazoa - 1235; Fungi - 383; Plants - 223; Viruses - 14; Other Eukaryotes - 2457 (source: NCBI BLink).  protein_id AT1G59359.1p  transcript_id AT1G59359.1  protein_id AT1G59359.1p  transcript_id AT1G59359.1  
At1g59406	chr1:021845638	0.0	C/21845638-21845881,21845417-21845547,21845105-21845329,21844748-21845003,21844451-21844644	AT1G59406.1  CDS  gene_syn T4M14.17, T4M14_17  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function lipase activity|GO:0016298||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298||ISS  product GDSL-motif lipase, putative  note GDSL-motif lipase, putative; FUNCTIONS IN: hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: hydrolase, acting on ester bonds / lipase (TAIR:AT1G58520.3); Has 1776 Blast hits to 1758 proteins in 136 species: Archae - 0; Bacteria - 184; Metazoa - 1; Fungi - 3; Plants - 1575; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G59406.1p  transcript_id AT1G59406.1  protein_id AT1G59406.1p  transcript_id AT1G59406.1  
At1g59453	chr1:021853032	0.0	C/21853032-21853384,21852613-21852958,21852456-21852530,21852304-21852366,21852007-21852192,21851415-21851930,21850595-21851308,21850227-21850505,21849989-21850135,21849521-21849909,21848030-21849405,21847874-21847932,21847297-21847758,21847173-21847211,21846902-21847087	AT1G59453.1  CDS  gene_syn T4M14.16, T4M14_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product transcription factor-related  note transcription factor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: B-block binding subunit of TFIIIC (InterPro:IPR007309); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17450.1); Has 89 Blast hits to 81 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 36; Fungi - 3; Plants - 44; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G59453.1p  transcript_id AT1G59453.1  protein_id AT1G59453.1p  transcript_id AT1G59453.1  
At1g59500	chr1:021856292	0.0	C/21856292-21856614,21855941-21856042,21854493-21855861	AT1G59500.1  CDS  gene_syn GH3.4, T30E16.2, T30E16_2  gene GH3.4  function encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro.  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  go_process auxin homeostasis|GO:0010252|15659623|TAS  go_function indole-3-acetic acid amido synthetase activity|GO:0010279|15659623|IDA  product GH3.4; indole-3-acetic acid amido synthetase  note GH3.4; FUNCTIONS IN: indole-3-acetic acid amido synthetase activity; INVOLVED IN: auxin homeostasis, response to auxin stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: BRU6; indole-3-acetic acid amido synthetase (TAIR:AT4G37390.1); Has 874 Blast hits to 832 proteins in 116 species: Archae - 0; Bacteria - 239; Metazoa - 51; Fungi - 2; Plants - 220; Viruses - 0; Other Eukaryotes - 362 (source: NCBI BLink).  protein_id AT1G59500.1p  transcript_id AT1G59500.1  protein_id AT1G59500.1p  transcript_id AT1G59500.1  
At1g59510	chr1:021859768	0.0	W/21859768-21860913	AT1G59510.1  CDS  gene_syn CF9, T30E16.3, T30E16_3  gene CF9  function Encodes CF9.  go_component mitochondrion|GO:0005739||IEA  go_function molecular_function|GO:0003674||ND  product CF9  note CF9; FUNCTIONS IN: molecular_function unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: carbohydrate binding (TAIR:AT1G10150.1); Has 53 Blast hits to 53 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G59510.1p  transcript_id AT1G59510.1  protein_id AT1G59510.1p  transcript_id AT1G59510.1  
At1g59520	chr1:021861589	0.0	W/21861589-21861620,21861836-21862025,21862124-21862198,21862575-21862681,21863016-21863076,21863392-21863451,21863531-21863605,21864146-21864280,21864622-21864676,21865249-21865371,21865663-21865889,21865990-21866016	AT1G59520.1  CDS  gene_syn CW7, T30E16.4, T30E16_4  gene CW7  function Encodes CW7.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product CW7  note CW7; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; Has 113 Blast hits to 112 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 78; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G59520.1p  transcript_id AT1G59520.1  protein_id AT1G59520.1p  transcript_id AT1G59520.1  
At1g59520	chr1:021861589	0.0	W/21861589-21861620,21861836-21862025,21862124-21862198,21862575-21862681,21863016-21863076,21863392-21863451,21863531-21863605,21864146-21864280,21864622-21864676,21865249-21865418	AT1G59520.2  CDS  gene_syn CW7, T30E16.4, T30E16_4  gene CW7  function Encodes CW7.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product CW7  note CW7; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; Has 112 Blast hits to 111 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 77; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G59520.2p  transcript_id AT1G59520.2  protein_id AT1G59520.2p  transcript_id AT1G59520.2  
At1g59520	chr1:021861589	0.0	W/21861589-21861620,21861836-21862025,21862124-21862198,21862575-21862681,21863016-21863076,21863392-21863455,21863535-21863605,21864146-21864280,21864622-21864676,21865249-21865371,21865663-21865889,21865990-21866016	AT1G59520.3  CDS  gene_syn CW7, T30E16.4, T30E16_4  gene CW7  function Encodes CW7.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product CW7  note CW7; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; Has 113 Blast hits to 112 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 78; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G59520.3p  transcript_id AT1G59520.3  protein_id AT1G59520.3p  transcript_id AT1G59520.3  
At1g59530	chr1:021868262	0.0	W/21868262-21868708	AT1G59530.1  CDS  gene_syn ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 4, ATBZIP4, T30E16.6, T30E16_6  gene ATBZIP4  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  product ATBZIP4 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 4); DNA binding / transcription factor  note ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 4 (ATBZIP4); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: AtbZIP7 (Arabidopsis thaliana basic leucine-zipper 7); DNA binding / transcription factor (TAIR:AT4G37730.1); Has 634 Blast hits to 634 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 58; Fungi - 2; Plants - 568; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G59530.1p  transcript_id AT1G59530.1  protein_id AT1G59530.1p  transcript_id AT1G59530.1  
At1g59535	chr1:021871488	0.0	C/21871488-21871527,21871208-21871287	AT1G59535.1  CDS  gene_syn T30E16.8, T30E16_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G59535.1p  transcript_id AT1G59535.1  protein_id AT1G59535.1p  transcript_id AT1G59535.1  
At1g59540	chr1:021874083	0.0	W/21874083-21874221,21874344-21874433,21874531-21874649,21874738-21874851,21874941-21875022,21875110-21875177,21875254-21875313,21875417-21875559,21875639-21875741,21875854-21875934,21876122-21876190,21876262-21876321,21876416-21876568,21876848-21877135,21877694-21877777,21878011-21878169,21878265-21878513,21878972-21879382	AT1G59540.1  CDS  gene_syn T30E16.9, T30E16_9, ZCF125  gene ZCF125  function Encodes a kinesin-like protein.  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product ZCF125; ATP binding / microtubule motor  note ZCF125; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin motor protein-related (TAIR:AT3G10180.1); Has 15930 Blast hits to 12811 proteins in 474 species: Archae - 60; Bacteria - 559; Metazoa - 7593; Fungi - 1503; Plants - 1154; Viruses - 21; Other Eukaryotes - 5040 (source: NCBI BLink).  protein_id AT1G59540.1p  transcript_id AT1G59540.1  protein_id AT1G59540.1p  transcript_id AT1G59540.1  
At1g59540	chr1:021874578	0.0	W/21874578-21874649,21874738-21874851,21874941-21875022,21875110-21875177,21875254-21875313,21875417-21875559,21875639-21875741,21875854-21875934,21876122-21876190,21876262-21876321,21876416-21876568,21876848-21877135,21877694-21877777,21878011-21878169,21878265-21878513,21878972-21879382	AT1G59540.2  CDS  gene_syn T30E16.9, T30E16_9, ZCF125  gene ZCF125  function Encodes a kinesin-like protein.  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product ZCF125; ATP binding / microtubule motor  note ZCF125; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin motor protein-related (TAIR:AT3G10180.1); Has 14727 Blast hits to 12141 proteins in 458 species: Archae - 52; Bacteria - 501; Metazoa - 7028; Fungi - 1429; Plants - 1110; Viruses - 18; Other Eukaryotes - 4589 (source: NCBI BLink).  protein_id AT1G59540.2p  transcript_id AT1G59540.2  protein_id AT1G59540.2p  transcript_id AT1G59540.2  
At1g59550	chr1:021880406	0.0	C/21880406-21880788,21880125-21880263,21879649-21880050	AT1G59550.1  CDS  gene_syn T30E16.10, T30E16_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product UBX domain-containing protein  note UBX domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT4G14250.1); Has 191 Blast hits to 180 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 78; Fungi - 46; Plants - 55; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G59550.1p  transcript_id AT1G59550.1  protein_id AT1G59550.1p  transcript_id AT1G59550.1  
At1g59560	chr1:021881741	0.0	W/21881741-21881814,21881907-21881950,21882034-21882158,21882239-21882334,21882411-21882551,21882640-21882705,21882781-21882893,21882980-21883111,21883198-21883241,21883349-21883427,21883530-21883632	AT1G59560.1  CDS  gene_syn T30E16.12, T30E16_12, ZCF61  gene ZCF61  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product ZCF61; protein binding / zinc ion binding  note ZCF61; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G63900.1); Has 2307 Blast hits to 2221 proteins in 197 species: Archae - 0; Bacteria - 6; Metazoa - 1464; Fungi - 30; Plants - 323; Viruses - 167; Other Eukaryotes - 317 (source: NCBI BLink).  protein_id AT1G59560.1p  transcript_id AT1G59560.1  protein_id AT1G59560.1p  transcript_id AT1G59560.1  
At1g59570	chr1:021883843	0.0	C/21883843-21883924	AT1G59570.1  tRNA  gene_syn 51602.TRNA-SER-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT1G59570.1  
At1g59580	chr1:021884521	0.0	W/21884521-21884943,21885036-21885743	AT1G59580.1  CDS  gene_syn ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2, ATMPK2, MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2, MPK2, T30E16.13, T30E16_13  gene ATMPK2  function encodes a mitogen-activated kinase involved in innate immunity  go_process protein amino acid phosphorylation|GO:0006468|8130795|IDA  go_process signal transduction|GO:0007165|12119167|IC  go_function protein kinase activity|GO:0004672|8130795|IDA  go_function MAP kinase activity|GO:0004707|12119167|ISS  go_function kinase activity|GO:0016301||ISS  product ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2); MAP kinase/ kinase/ protein kinase  note ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2 (ATMPK2); FUNCTIONS IN: MAP kinase activity, protein kinase activity, kinase activity; INVOLVED IN: signal transduction, protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1); MAP kinase/ kinase (TAIR:AT1G10210.2); Has 88792 Blast hits to 87548 proteins in 3085 species: Archae - 45; Bacteria - 6743; Metazoa - 39410; Fungi - 8079; Plants - 17017; Viruses - 430; Other Eukaryotes - 17068 (source: NCBI BLink).  protein_id AT1G59580.1p  transcript_id AT1G59580.1  protein_id AT1G59580.1p  transcript_id AT1G59580.1  
At1g59580	chr1:021884521	0.0	W/21884521-21884943,21885036-21885743	AT1G59580.2  CDS  gene_syn ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2, ATMPK2, MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2, MPK2, T30E16.13, T30E16_13  gene ATMPK2  function encodes a mitogen-activated kinase involved in innate immunity  go_process protein amino acid phosphorylation|GO:0006468|8130795|IDA  go_process signal transduction|GO:0007165|12119167|IC  go_function protein kinase activity|GO:0004672|8130795|IDA  go_function MAP kinase activity|GO:0004707|12119167|ISS  go_function kinase activity|GO:0016301||ISS  product ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2); MAP kinase/ kinase/ protein kinase  note ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2 (ATMPK2); FUNCTIONS IN: MAP kinase activity, protein kinase activity, kinase activity; INVOLVED IN: signal transduction, protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1); MAP kinase/ kinase (TAIR:AT1G10210.2); Has 88792 Blast hits to 87548 proteins in 3085 species: Archae - 45; Bacteria - 6743; Metazoa - 39410; Fungi - 8079; Plants - 17017; Viruses - 430; Other Eukaryotes - 17068 (source: NCBI BLink).  protein_id AT1G59580.2p  transcript_id AT1G59580.2  protein_id AT1G59580.2p  transcript_id AT1G59580.2  
At1g59590	chr1:021887860	0.0	W/21887860-21888495	AT1G59590.1  CDS  gene_syn T30E16.15, T30E16_15, ZCF37  gene ZCF37  function ZCF37 mRNA, complete cds  product ZCF37  note ZCF37; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10220.1); Has 16 Blast hits to 16 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G59590.1p  transcript_id AT1G59590.1  protein_id AT1G59590.1p  transcript_id AT1G59590.1  
At1g59600	chr1:021891397	0.0	C/21891397-21891910,21891180-21891321,21890610-21890769,21890016-21890168,21889927-21889932	AT1G59600.1  CDS  gene_syn T30E16.16, T30E16_16, ZCW7  gene ZCW7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ZCW7  note ZCW7; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 107 Blast hits to 107 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 89; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G59600.1p  transcript_id AT1G59600.1  protein_id AT1G59600.1p  transcript_id AT1G59600.1  
At1g59610	chr1:021893413	0.0	W/21893413-21893553,21894053-21894103,21894220-21894340,21894470-21894562,21894882-21894943,21895101-21895218,21895360-21895696,21896394-21896541,21896820-21896921,21897012-21897131,21897389-21897472,21897555-21897682,21898035-21898119,21898231-21898390,21898752-21898828,21898960-21899016,21899259-21899403,21899491-21899630,21899887-21900000,21900095-21900162,21900255-21900427,21900542-21900780	AT1G59610.1  CDS  gene_syn ADL3, ARABIDOPSIS DYNAMIN-LIKE 3, CF1, DYNAMIN-LIKE 3, T30E16.17, T30E16_17  gene ADL3  function A high molecular weight GTPase whose GTP-binding domain shows a low homology to those of other plant dynamin-like proteins.Contains a pleckstrin homologous domain.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function GTPase activity|GO:0003924|10938838|ISS  product ADL3 (ARABIDOPSIS DYNAMIN-LIKE 3); GTPase  note ARABIDOPSIS DYNAMIN-LIKE 3 (ADL3); FUNCTIONS IN: GTPase activity; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130), Pleckstrin homology-type (InterPro:IPR011993), Dynamin, GTPase region (InterPro:IPR001401), Dynamin central region (InterPro:IPR000375), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: ADL6 (DYNAMIN-LIKE PROTEIN 6); GTPase (TAIR:AT1G10290.1); Has 2453 Blast hits to 2348 proteins in 250 species: Archae - 0; Bacteria - 49; Metazoa - 1304; Fungi - 414; Plants - 412; Viruses - 0; Other Eukaryotes - 274 (source: NCBI BLink).  protein_id AT1G59610.1p  transcript_id AT1G59610.1  protein_id AT1G59610.1p  transcript_id AT1G59610.1  
At1g59620	chr1:021902627	0.0	W/21902627-21903025,21903129-21903498,21903613-21903759,21903857-21904803,21904862-21905527	AT1G59620.1  CDS  gene_syn CW9, T30E16.18, T30E16_18  gene CW9  function Encodes CW9.  go_process apoptosis|GO:0006915||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process defense response|GO:0006952||ISS  product CW9; ATP binding  note CW9; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT1G58390.1); Has 9352 Blast hits to 9048 proteins in 337 species: Archae - 2; Bacteria - 284; Metazoa - 172; Fungi - 34; Plants - 8816; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT1G59620.1p  transcript_id AT1G59620.1  protein_id AT1G59620.1p  transcript_id AT1G59620.1  
At1g59630	chr1:021907724	0.0	C/21907724-21907955,21907177-21907664	AT1G59630.1  CDS  gene_syn T30E16.20, T30E16_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G58090.1); Has 138 Blast hits to 138 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G59630.1p  transcript_id AT1G59630.1  protein_id AT1G59630.1p  transcript_id AT1G59630.1  
At1g59640	chr1:021910752	0.0	C/21910752-21911030,21910454-21910630,21910305-21910370,21910157-21910225,21909635-21910075	AT1G59640.2  CDS  gene_syn BIG PETAL, BIG PETAL P, BIG PETAL UB, BPE, BPEP, BPEUB, T30E16.21, T30E16_21, ZCW32  gene ZCW32  function A basic helix-loop-helix encoding gene (BIGPETAL, BPE) involved in the control of petal size. BPE is expressed via two mRNAs derived from an alternative splicing event. The BPEub (AT1G59640.1)transcript is expressed ubiquitously, whereas the BPEp (AT1G59640.2) transcript is preferentially expressed in petals. Plants that lack the petal-expressed variant BPEp have larger petals as a result of increased cell size. BPEp is positively regulated downstream of APETALA3, PISTILLATA, APETALA1 and PISTILLATA3 and is negatively regulated downstream of AGAMOUS.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process petal morphogenesis|GO:0048446|16902407|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product ZCW32; DNA binding / transcription factor  note ZCW32; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: petal morphogenesis, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT5G62610.1); Has 1406 Blast hits to 1406 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 146; Fungi - 17; Plants - 1242; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G59640.2p  transcript_id AT1G59640.2  protein_id AT1G59640.2p  transcript_id AT1G59640.2  
At1g59640	chr1:021910752	0.0	C/21910752-21911030,21910454-21910630,21910305-21910370,21910157-21910225,21910004-21910075,21909464-21909595	AT1G59640.1  CDS  gene_syn BIG PETAL, BIG PETAL P, BIG PETAL UB, BPE, BPEP, BPEUB, T30E16.21, T30E16_21, ZCW32  gene ZCW32  function A basic helix-loop-helix encoding gene (BIGPETAL, BPE) involved in the control of petal size. BPE is expressed via two mRNAs derived from an alternative splicing event. The BPEub (AT1G59640.1)transcript is expressed ubiquitously, whereas the BPEp (AT1G59640.2) transcript is preferentially expressed in petals. Plants that lack the petal-expressed variant BPEp have larger petals as a result of increased cell size. BPEp is positively regulated downstream of APETALA3, PISTILLATA, APETALA1 and PISTILLATA3 and is negatively regulated downstream of AGAMOUS.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process petal morphogenesis|GO:0048446|16902407|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product ZCW32; DNA binding / transcription factor  note BIG PETAL (BPE); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: petal morphogenesis, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT5G62610.1); Has 1410 Blast hits to 1409 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 142; Fungi - 28; Plants - 1239; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G59640.1p  transcript_id AT1G59640.1  protein_id AT1G59640.1p  transcript_id AT1G59640.1  
At1g59650	chr1:021920099	0.0	W/21920099-21920258,21920736-21920816,21920903-21921283,21921367-21921502,21921589-21921754,21921846-21921974,21922071-21922265,21922356-21922478,21922563-21922670	AT1G59650.1  CDS  gene_syn CW14, T30E16.22, T30E16_22  gene CW14  function Encodes CW14.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function molecular_function|GO:0003674||ND  product CW14  note CW14; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10410.1); Has 122 Blast hits to 122 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G59650.1p  transcript_id AT1G59650.1  protein_id AT1G59650.1p  transcript_id AT1G59650.1  
At1g59660	chr1:021924693	0.0	W/21924693-21924717,21924873-21925166,21925508-21926134,21926229-21926441,21926541-21927160,21927269-21927353,21927436-21927496,21927623-21927761,21927927-21928043,21928151-21928307,21928485-21928526,21928620-21929233	AT1G59660.1  CDS  gene_syn T30E16.24, T30E16_24  go_component nuclear pore|GO:0005643||IEA  go_component chloroplast|GO:0009507||IEA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||ISS  product nucleoporin family protein  note nucleoporin family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, nuclear pore; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S59, nucleoporin (InterPro:IPR007230); BEST Arabidopsis thaliana protein match is: nucleoporin family protein (TAIR:AT1G10390.2); Has 54449 Blast hits to 22752 proteins in 1211 species: Archae - 97; Bacteria - 12426; Metazoa - 17833; Fungi - 9385; Plants - 2078; Viruses - 614; Other Eukaryotes - 12016 (source: NCBI BLink).  protein_id AT1G59660.1p  transcript_id AT1G59660.1  protein_id AT1G59660.1p  transcript_id AT1G59660.1  
At1g59670	chr1:021930035	0.0	W/21930035-21930361,21930854-21931228	AT1G59670.1  CDS  gene_syn ATGSTU15, GLUTATHIONE S-TRANSFERASE TAU 15, T30E16.25, T30E16_25  gene ATGSTU15  function Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTU15 (GLUTATHIONE S-TRANSFERASE TAU 15); glutathione transferase  note GLUTATHIONE S-TRANSFERASE TAU 15 (ATGSTU15); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTU16 (GLUTATHIONE S-TRANSFERASE TAU 16); glutathione transferase (TAIR:AT1G59700.1); Has 2029 Blast hits to 2026 proteins in 375 species: Archae - 0; Bacteria - 568; Metazoa - 193; Fungi - 83; Plants - 1007; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink).  protein_id AT1G59670.1p  transcript_id AT1G59670.1  protein_id AT1G59670.1p  transcript_id AT1G59670.1  
At1g59675	chr1:021932024	0.0	C/21932024-21932403,21931833-21931947	AT1G59675.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G09190.1); Has 273 Blast hits to 270 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 273; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G59675.1p  transcript_id AT1G59675.1  protein_id AT1G59675.1p  transcript_id AT1G59675.1  
At1g59680	chr1:021933021	0.0	W/21933021-21933296,21933588-21933660,21933771-21934216	AT1G59680.1  CDS  gene_syn EDA1, T30E16.27, T30E16_27, embryo sac development arrest 1  gene EDA1  go_component cellular_component|GO:0005575||ND  go_process megagametogenesis|GO:0009561|15634699|IMP  go_function molecular_function|GO:0003674||ND  product EDA1 (embryo sac development arrest 1)  note embryo sac development arrest 1 (EDA1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: megagametogenesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14030.1); Has 615 Blast hits to 365 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 615; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G59680.1p  transcript_id AT1G59680.1  protein_id AT1G59680.1p  transcript_id AT1G59680.1  
At1g59690	chr1:021935686	0.0	C/21935686-21935820,21935310-21935606	AT1G59690.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated type 3 (InterPro:IPR013187); BEST Arabidopsis thaliana protein match is: F-box family protein-related (TAIR:AT4G13060.1); Has 84 Blast hits to 84 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G59690.1p  transcript_id AT1G59690.1  protein_id AT1G59690.1p  transcript_id AT1G59690.1  
At1g59700	chr1:021936459	0.0	W/21936459-21936785,21937386-21937763	AT1G59700.1  CDS  gene_syn ATGSTU16, F23H11.1, F23H11_1, GLUTATHIONE S-TRANSFERASE TAU 16  gene ATGSTU16  function Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTU16 (GLUTATHIONE S-TRANSFERASE TAU 16); glutathione transferase  note GLUTATHIONE S-TRANSFERASE TAU 16 (ATGSTU16); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTU15 (GLUTATHIONE S-TRANSFERASE TAU 15); glutathione transferase (TAIR:AT1G59670.1); Has 3325 Blast hits to 3322 proteins in 690 species: Archae - 0; Bacteria - 1391; Metazoa - 354; Fungi - 96; Plants - 1067; Viruses - 0; Other Eukaryotes - 417 (source: NCBI BLink).  protein_id AT1G59700.1p  transcript_id AT1G59700.1  protein_id AT1G59700.1p  transcript_id AT1G59700.1  
At1g59710	chr1:021938623	0.0	W/21938623-21939207,21939278-21939572,21939651-21939673	AT1G59710.1  CDS  gene_syn F23H11.2, F23H11_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF569 (InterPro:IPR007679), Actin_cross-linking (InterPro:IPR008999); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27100.1); Has 119 Blast hits to 107 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 119; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G59710.1p  transcript_id AT1G59710.1  protein_id AT1G59710.1p  transcript_id AT1G59710.1  
At1g59720	chr1:021939868	0.0	C/21939868-21941784	AT1G59720.1  CDS  gene_syn CHLORORESPIRATORY REDUCTION28, CRR28, F23H11.3, F23H11_3  gene CRR28  function Pentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity.  go_component chloroplast|GO:0009507|19182104|IDA  go_process mRNA modification|GO:0016556|19182104|IMP  go_function endonuclease activity|GO:0004519|19182104|IDA  product CRR28 (CHLORORESPIRATORY REDUCTION28); endonuclease  note CHLORORESPIRATORY REDUCTION28 (CRR28); FUNCTIONS IN: endonuclease activity; INVOLVED IN: mRNA modification; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21065.1); Has 11271 Blast hits to 4734 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 22; Plants - 11064; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink).  protein_id AT1G59720.1p  transcript_id AT1G59720.1  protein_id AT1G59720.1p  transcript_id AT1G59720.1  
At1g59722	chr1:021945110	0.0	C/21945110-21945221,21944689-21945047	AT1G59722.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G59722.1p  transcript_id AT1G59722.1  protein_id AT1G59722.1p  transcript_id AT1G59722.1  
At1g59725	chr1:021950738	0.0	W/21950738-21951291,21951769-21952210	AT1G59725.1  CDS  gene_syn F23H11.4, F23H11_4  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock protein, putative  note DNAJ heat shock protein, putative; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock protein, putative (TAIR:AT1G10350.1); Has 19799 Blast hits to 19594 proteins in 2079 species: Archae - 113; Bacteria - 5905; Metazoa - 3800; Fungi - 1689; Plants - 1444; Viruses - 20; Other Eukaryotes - 6828 (source: NCBI BLink).  protein_id AT1G59725.1p  transcript_id AT1G59725.1  protein_id AT1G59725.1p  transcript_id AT1G59725.1  
At1g59730	chr1:021953258	0.0	C/21953258-21953392,21952972-21953094,21952759-21952890	AT1G59730.1  CDS  gene_syn ATH7, F23H11.5, F23H11_5, thioredoxin H-type 7  gene ATH7  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process cell redox homeostasis|GO:0045454||IEA  go_component cellular_component|GO:0005575||ND  product ATH7 (thioredoxin H-type 7)  note thioredoxin H-type 7 (ATH7); INVOLVED IN: N-terminal protein myristoylation, cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336), Thioredoxin, conserved site (InterPro:IPR017937); BEST Arabidopsis thaliana protein match is: ATH8 (thioredoxin H-type 8) (TAIR:AT1G69880.1); Has 10680 Blast hits to 10656 proteins in 1655 species: Archae - 135; Bacteria - 5020; Metazoa - 1198; Fungi - 469; Plants - 912; Viruses - 3; Other Eukaryotes - 2943 (source: NCBI BLink).  protein_id AT1G59730.1p  transcript_id AT1G59730.1  protein_id AT1G59730.1p  transcript_id AT1G59730.1  
At1g59740	chr1:021968227	0.0	W/21968227-21968383,21968598-21968815,21969153-21969590,21970946-21971073,21971478-21972312	AT1G59740.1  CDS  gene_syn F23H11.6, F23H11_6  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_process response to nematode|GO:0009624|16478044|IEP  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport, response to nematode; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region, conserved site (InterPro:IPR018456), TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT1G33440.1); Has 3939 Blast hits to 3857 proteins in 732 species: Archae - 0; Bacteria - 1785; Metazoa - 425; Fungi - 235; Plants - 1136; Viruses - 0; Other Eukaryotes - 358 (source: NCBI BLink).  protein_id AT1G59740.1p  transcript_id AT1G59740.1  protein_id AT1G59740.1p  transcript_id AT1G59740.1  
At1g59750	chr1:021980414	0.0	W/21980414-21980450,21980656-21980771,21981027-21981122,21981229-21981285,21981384-21981536,21981622-21981706,21981860-21981950,21982029-21982193,21982419-21982538,21982629-21982704,21982824-21982995,21983072-21983541,21983688-21983878,21984025-21984193	AT1G59750.1  CDS  gene_syn ARF1, AUXIN RESPONSE FACTOR 1, F23H11.7, F23H11_7  gene ARF1  function Encodes a member of the auxin response factor family. ARFs bind to the cis element 5 -TGTCTC-3  ARFs mediate changes in gene expression in response to auxin. ARF s form heterodimers with IAA/AUX genes. ARF1 enhances mutant phenotypes of ARF2 and may act with ARF2 to control aspects of maturation and senescence.ARF1:LUC and 3xHA:ARF1 proteins have a half-life of ~3-4 hours and their degradation is reduced by proteasome inhibitors. 3xHA:ARF1 degradation is not affected by a pre-treatment with IAA. A nuclear-targeted fusion protein containing the middle region of ARF1 linked to LUC:NLS has a similar half-life to the full-length ARF1:LUC construct. The degradation of 3xHA:ARF1 is not affected in an axr6-3 mutant grown at room temperature, although the degradation of AXR2/IAA7 is slowed under these conditions.  go_component nucleus|GO:0005634|10318972|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355|9188533|TAS  go_process response to auxin stimulus|GO:0009733|9188533|IEP  go_process leaf senescence|GO:0010150|16176952|IGI  go_process negative regulation of transcription|GO:0016481|16176952|IEP  go_function DNA binding|GO:0003677|10476078|IDA  go_function DNA binding|GO:0003677|9188533|IPI  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9188533|TAS  product ARF1 (AUXIN RESPONSE FACTOR 1); DNA binding / transcription factor  note AUXIN RESPONSE FACTOR 1 (ARF1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: leaf senescence, response to auxin stimulus, negative regulation of transcription, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: ARF11 (AUXIN RESPONSE FACTOR 11); transcription factor (TAIR:AT2G46530.1); Has 1410 Blast hits to 1215 proteins in 87 species: Archae - 0; Bacteria - 15; Metazoa - 8; Fungi - 11; Plants - 1348; Viruses - 4; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT1G59750.1p  transcript_id AT1G59750.1  protein_id AT1G59750.1p  transcript_id AT1G59750.1  
At1g59750	chr1:021980414	0.0	W/21980414-21980450,21980656-21980771,21981027-21981122,21981229-21981285,21981384-21981536,21981622-21981706,21981860-21981950,21982029-21982193,21982419-21982538,21982629-21982704,21982824-21982995,21983072-21983541,21983688-21983878,21984025-21984193	AT1G59750.3  CDS  gene_syn ARF1, AUXIN RESPONSE FACTOR 1, F23H11.7, F23H11_7  gene ARF1  function Encodes a member of the auxin response factor family. ARFs bind to the cis element 5 -TGTCTC-3  ARFs mediate changes in gene expression in response to auxin. ARF s form heterodimers with IAA/AUX genes. ARF1 enhances mutant phenotypes of ARF2 and may act with ARF2 to control aspects of maturation and senescence.ARF1:LUC and 3xHA:ARF1 proteins have a half-life of ~3-4 hours and their degradation is reduced by proteasome inhibitors. 3xHA:ARF1 degradation is not affected by a pre-treatment with IAA. A nuclear-targeted fusion protein containing the middle region of ARF1 linked to LUC:NLS has a similar half-life to the full-length ARF1:LUC construct. The degradation of 3xHA:ARF1 is not affected in an axr6-3 mutant grown at room temperature, although the degradation of AXR2/IAA7 is slowed under these conditions.  go_component nucleus|GO:0005634|10318972|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355|9188533|TAS  go_process response to auxin stimulus|GO:0009733|9188533|IEP  go_process leaf senescence|GO:0010150|16176952|IGI  go_process negative regulation of transcription|GO:0016481|16176952|IEP  go_function DNA binding|GO:0003677|10476078|IDA  go_function DNA binding|GO:0003677|9188533|IPI  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9188533|TAS  product ARF1 (AUXIN RESPONSE FACTOR 1); DNA binding / transcription factor  note AUXIN RESPONSE FACTOR 1 (ARF1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: leaf senescence, response to auxin stimulus, negative regulation of transcription, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: ARF11 (AUXIN RESPONSE FACTOR 11); transcription factor (TAIR:AT2G46530.1); Has 1410 Blast hits to 1215 proteins in 87 species: Archae - 0; Bacteria - 15; Metazoa - 8; Fungi - 11; Plants - 1348; Viruses - 4; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT1G59750.3p  transcript_id AT1G59750.3  protein_id AT1G59750.3p  transcript_id AT1G59750.3  
At1g59750	chr1:021980414	0.0	W/21980414-21980450,21980656-21980771,21981027-21981122,21981229-21981285,21981384-21981536,21981622-21981706,21981860-21981950,21982029-21982193,21982419-21982538,21982629-21982704,21982824-21982995,21983081-21983541,21983688-21983878,21984025-21984193	AT1G59750.2  CDS  gene_syn ARF1, AUXIN RESPONSE FACTOR 1, F23H11.7, F23H11_7  gene ARF1  function Encodes a member of the auxin response factor family. ARFs bind to the cis element 5 -TGTCTC-3  ARFs mediate changes in gene expression in response to auxin. ARF s form heterodimers with IAA/AUX genes. ARF1 enhances mutant phenotypes of ARF2 and may act with ARF2 to control aspects of maturation and senescence.ARF1:LUC and 3xHA:ARF1 proteins have a half-life of ~3-4 hours and their degradation is reduced by proteasome inhibitors. 3xHA:ARF1 degradation is not affected by a pre-treatment with IAA. A nuclear-targeted fusion protein containing the middle region of ARF1 linked to LUC:NLS has a similar half-life to the full-length ARF1:LUC construct. The degradation of 3xHA:ARF1 is not affected in an axr6-3 mutant grown at room temperature, although the degradation of AXR2/IAA7 is slowed under these conditions.  go_component nucleus|GO:0005634|10318972|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355|9188533|TAS  go_process response to auxin stimulus|GO:0009733|9188533|IEP  go_process leaf senescence|GO:0010150|16176952|IGI  go_process negative regulation of transcription|GO:0016481|16176952|IEP  go_function DNA binding|GO:0003677|10476078|IDA  go_function DNA binding|GO:0003677|9188533|IPI  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9188533|TAS  product ARF1 (AUXIN RESPONSE FACTOR 1); DNA binding / transcription factor  note AUXIN RESPONSE FACTOR 1 (ARF1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: leaf senescence, response to auxin stimulus, negative regulation of transcription, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: ARF11 (AUXIN RESPONSE FACTOR 11); transcription factor (TAIR:AT2G46530.1); Has 1416 Blast hits to 1188 proteins in 81 species: Archae - 0; Bacteria - 9; Metazoa - 21; Fungi - 4; Plants - 1331; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT1G59750.2p  transcript_id AT1G59750.2  protein_id AT1G59750.2p  transcript_id AT1G59750.2  
At1g59760	chr1:021989853	0.0	C/21989853-21990110,21989495-21989695,21989191-21989409,21988585-21988923,21987804-21987908,21987223-21987333,21986847-21987097,21986600-21986723,21986228-21986510,21985979-21986133,21985698-21985841,21985383-21985615,21984947-21985211,21984571-21984849	AT1G59760.1  CDS  gene_syn F23H11.8, F23H11_8  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides|GO:0016818||IEA  go_function ATP-dependent helicase activity|GO:0008026||ISS  product ATP-dependent RNA helicase, putative  note ATP-dependent RNA helicase, putative; FUNCTIONS IN: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DSH, C-terminal (InterPro:IPR012961), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), RNA helicase, ATP-dependent, SK12/DOB1 (InterPro:IPR016438), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: HEN2 (hua enhancer 2); ATP-dependent helicase/ RNA helicase (TAIR:AT2G06990.1); Has 6964 Blast hits to 6022 proteins in 740 species: Archae - 501; Bacteria - 1505; Metazoa - 1005; Fungi - 792; Plants - 219; Viruses - 31; Other Eukaryotes - 2911 (source: NCBI BLink).  protein_id AT1G59760.1p  transcript_id AT1G59760.1  protein_id AT1G59760.1p  transcript_id AT1G59760.1  
At1g59770	chr1:021991527	0.0	C/21991527-21992653	AT1G59770.1  mRNA_TE_gene  pseudo  gene_syn F23H11.9, F23H11_9  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 5.2e-49 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At1g59780	chr1:021996833	0.0	C/21996833-21997691,21996559-21996699,21993581-21995301	AT1G59780.1  CDS  gene_syn F23H11.10, F23H11_10  go_process apoptosis|GO:0006915||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative  note disease resistance protein (CC-NBS-LRR class), putative; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, flower, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT1G58410.1); Has 11284 Blast hits to 10457 proteins in 403 species: Archae - 16; Bacteria - 684; Metazoa - 954; Fungi - 78; Plants - 9366; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).  protein_id AT1G59780.1p  transcript_id AT1G59780.1  protein_id AT1G59780.1p  transcript_id AT1G59780.1  
At1g59790	chr1:022001504	0.0	W/22001504-22001652,22001732-22001825,22001965-22002156,22002241-22002288,22002380-22002583,22002666-22002743,22002824-22002913,22003017-22003097,22003197-22003385	AT1G59790.1  CDS  gene_syn F23H11.11, F23H11_11  go_component cullin-RING ubiquitin ligase complex|GO:0031461||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin protein ligase binding|GO:0031625||IEA  product cullin-related  note cullin-related; FUNCTIONS IN: ubiquitin protein ligase binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cullin-RING ubiquitin ligase complex; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cullin, N-terminal region (InterPro:IPR001373), Cullin repeat-like (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein binding (TAIR:AT4G02570.3); Has 1083 Blast hits to 1083 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 638; Fungi - 200; Plants - 144; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT1G59790.1p  transcript_id AT1G59790.1  protein_id AT1G59790.1p  transcript_id AT1G59790.1  
At1g59800	chr1:022004964	0.0	W/22004964-22005097,22005182-22005269,22005362-22005547,22005634-22005681,22005769-22005972,22006065-22006172	AT1G59800.1  CDS  gene_syn F23H11.12, F23H11_12  go_component cullin-RING ubiquitin ligase complex|GO:0031461||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin protein ligase binding|GO:0031625||IEA  product cullin-related  note cullin-related; FUNCTIONS IN: ubiquitin protein ligase binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cullin-RING ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: Cullin, N-terminal region (InterPro:IPR001373), Cullin repeat-like (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: cullin-related (TAIR:AT1G59790.1); Has 1022 Blast hits to 1022 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 608; Fungi - 199; Plants - 134; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).  protein_id AT1G59800.1p  transcript_id AT1G59800.1  protein_id AT1G59800.1p  transcript_id AT1G59800.1  
At1g59810	chr1:022008604	0.0	W/22008604-22009455	AT1G59810.1  CDS  gene_syn AGL50, F23H11.13, F23H11_13  gene AGL50  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|12837945|ISS  product AGL50; transcription factor  note AGL50; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL49 (AGAMOUS-LIKE 49); transcription factor (TAIR:AT1G60040.1); Has 139 Blast hits to 139 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G59810.1p  transcript_id AT1G59810.1  protein_id AT1G59810.1p  transcript_id AT1G59810.1  
At1g59820	chr1:022011599	0.0	W/22011599-22011754,22011900-22011965,22012213-22012274,22012414-22012495,22012661-22012771,22013542-22013619,22013743-22013839,22014432-22014538,22014783-22014848,22015013-22015134,22015245-22015320,22015408-22015485,22015577-22015693,22015870-22016019,22016109-22016213,22016553-22016695,22016882-22016983,22017068-22017131,22017210-22017422,22017599-22017764,22017853-22017932,22018028-22018267,22018466-22018687,22018761-22018928,22019043-22019405,22019501-22019607,22019723-22020023	AT1G59820.1  CDS  gene_syn ALA3, Aminophospholipid ATPase3, F23H11.14, F23H11_14  gene ALA3  function Encodes a phospholipid translocase. Involved in secretory vesicle formation from trans-Golgi in peripheral columella cells at the root tip. Mutants have short primary roots and grow slower.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process Golgi vesicle budding|GO:0048194|18344284|IMP  go_process root development|GO:0048364|18344284|IMP  go_process shoot development|GO:0048367|18344284|IMP  go_function phospholipid transporter activity|GO:0005548|18344284|IDA  go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662||ISS  product ALA3 (Aminophospholipid ATPase3); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism / phospholipid transporter  note Aminophospholipid ATPase3 (ALA3); FUNCTIONS IN: phospholipid transporter activity, ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: Golgi vesicle budding, shoot development, root development; LOCATED IN: Golgi apparatus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, phospholipid-translocating, flippase (InterPro:IPR006539), ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism (TAIR:AT1G17500.1); Has 7796 Blast hits to 6799 proteins in 835 species: Archae - 90; Bacteria - 1839; Metazoa - 2460; Fungi - 1365; Plants - 493; Viruses - 1; Other Eukaryotes - 1548 (source: NCBI BLink).  protein_id AT1G59820.1p  transcript_id AT1G59820.1  protein_id AT1G59820.1p  transcript_id AT1G59820.1  
At1g59830	chr1:022022041	0.0	C/22022041-22022293,22021720-22021834,22021515-22021623,22021350-22021427,22020929-22021162	AT1G59830.2  CDS  gene_syn F23H11.15, F23H11_15, PP2A-1  gene PP2A-1  function Encodes one of two isoforms of the catalytic subunit of protein phosphatase 2A.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722|8382968|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PP2A-1; protein serine/threonine phosphatase  note PP2A-1; FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: PP2A-2; protein serine/threonine phosphatase (TAIR:AT1G10430.1); Has 5187 Blast hits to 5094 proteins in 348 species: Archae - 49; Bacteria - 113; Metazoa - 2000; Fungi - 931; Plants - 600; Viruses - 5; Other Eukaryotes - 1489 (source: NCBI BLink).  protein_id AT1G59830.2p  transcript_id AT1G59830.2  protein_id AT1G59830.2p  transcript_id AT1G59830.2  
At1g59830	chr1:022022041	0.0	C/22022041-22022293,22021720-22021834,22021515-22021623,22021350-22021427,22020971-22021162,22020708-22020881	AT1G59830.1  CDS  gene_syn F23H11.15, F23H11_15, PP2A-1  gene PP2A-1  function Encodes one of two isoforms of the catalytic subunit of protein phosphatase 2A.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722|8382968|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PP2A-1; protein serine/threonine phosphatase  note PP2A-1; FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: PP2A-2; protein serine/threonine phosphatase (TAIR:AT1G10430.1); Has 5262 Blast hits to 5138 proteins in 351 species: Archae - 49; Bacteria - 113; Metazoa - 2046; Fungi - 931; Plants - 602; Viruses - 5; Other Eukaryotes - 1516 (source: NCBI BLink).  protein_id AT1G59830.1p  transcript_id AT1G59830.1  protein_id AT1G59830.1p  transcript_id AT1G59830.1  
At1g59833	chr1:022023337	0.0	W/22023337-22023435,22023559-22023714	AT1G59833.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G13542.1); Has 10 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G59833.1p  transcript_id AT1G59833.1  protein_id AT1G59833.1p  transcript_id AT1G59833.1  
At1g59835	chr1:022025041	0.0	C/22025041-22025421	AT1G59835.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50610.1); Has 25 Blast hits to 11 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G59835.1p  transcript_id AT1G59835.1  protein_id AT1G59835.1p  transcript_id AT1G59835.1  
At1g59840	chr1:022026569	0.0	W/22026569-22026688,22026778-22026950,22027147-22027246,22027332-22027405,22027495-22027676,22027759-22027829,22027912-22027995,22028085-22028174	AT1G59840.1  CDS  gene_syn CCB4, COFACTOR ASSEMBLY OF COMPLEX C, F23H11.16, F23H11_16  gene CCB4  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|18593701|IDA  go_process cytochrome b6f complex assembly|GO:0010190|18593701|IMP  go_function molecular_function|GO:0003674||ND  product CCB4 (COFACTOR ASSEMBLY OF COMPLEX C)  note COFACTOR ASSEMBLY OF COMPLEX C (CCB4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cytochrome b6f complex assembly; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 218 Blast hits to 218 proteins in 60 species: Archae - 0; Bacteria - 97; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT1G59840.1p  transcript_id AT1G59840.1  protein_id AT1G59840.1p  transcript_id AT1G59840.1  
At1g59840	chr1:022026569	0.0	W/22026569-22026688,22026778-22026950,22027147-22027246,22027332-22027405,22027495-22027676,22027759-22027829,22027912-22027995,22028085-22028174	AT1G59840.2  CDS  gene_syn CCB4, COFACTOR ASSEMBLY OF COMPLEX C, F23H11.16, F23H11_16  gene CCB4  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|18593701|IDA  go_process cytochrome b6f complex assembly|GO:0010190|18593701|IMP  go_function molecular_function|GO:0003674||ND  product CCB4 (COFACTOR ASSEMBLY OF COMPLEX C)  note COFACTOR ASSEMBLY OF COMPLEX C (CCB4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cytochrome b6f complex assembly; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 218 Blast hits to 218 proteins in 60 species: Archae - 0; Bacteria - 97; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT1G59840.2p  transcript_id AT1G59840.2  protein_id AT1G59840.2p  transcript_id AT1G59840.2  
At1g59850	chr1:022029377	0.0	C/22029377-22030207,22028768-22029277,22028509-22028664	AT1G59850.1  CDS  gene_syn F23H11.17, F23H11_17  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT1G27210.1); Has 509 Blast hits to 437 proteins in 108 species: Archae - 0; Bacteria - 8; Metazoa - 157; Fungi - 121; Plants - 101; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT1G59850.1p  transcript_id AT1G59850.1  protein_id AT1G59850.1p  transcript_id AT1G59850.1  
At1g59860	chr1:022031474	0.0	W/22031474-22031941	AT1G59860.1  CDS  gene_syn F23H11.18, F23H11_18  go_process response to heat|GO:0009408||ISS  product 17.6 kDa class I heat shock protein (HSP17.6A-CI)  note 17.6 kDa class I heat shock protein (HSP17.6A-CI); INVOLVED IN: response to heat; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: 17.8 kDa class I heat shock protein (HSP17.8-CI) (TAIR:AT1G07400.1); Has 4336 Blast hits to 4336 proteins in 945 species: Archae - 117; Bacteria - 2321; Metazoa - 138; Fungi - 219; Plants - 1016; Viruses - 0; Other Eukaryotes - 525 (source: NCBI BLink).  protein_id AT1G59860.1p  transcript_id AT1G59860.1  protein_id AT1G59860.1p  transcript_id AT1G59860.1  
At1g59865	chr1:022033000	0.0	C/22033000-22033297,22032534-22032639,22032323-22032446	AT1G59865.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G59865.1p  transcript_id AT1G59865.1  protein_id AT1G59865.1p  transcript_id AT1G59865.1  
At1g59865	chr1:022033000	0.0	C/22033000-22033297,22032795-22032844	AT1G59865.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G59865.2p  transcript_id AT1G59865.2  protein_id AT1G59865.2p  transcript_id AT1G59865.2  
At1g59870	chr1:022034661	0.0	W/22034661-22035498,22035581-22035711,22035988-22037250,22037337-22037493,22037573-22037677,22037757-22037902,22037987-22038828,22038917-22039844	AT1G59870.1  CDS  gene_syn F23H11.19, F23H11_19, PDR8, PEN3, PENETRATION 3, PLEIOTROPIC DRUG RESISTANCE 8  gene PEN3  function ATP binding cassette transporter. Localized to the plasma membrane in uninfected cells. In infected leaves, the protein concentrated at infection sites. Contributes to nonhost resistance to inappropriate pathogens that enter by direct penetration in a salicylic acid dependent manner. Required for mlo resistance. Has Cd transporter activity (Cd2+ extrusion pump) and contributes to heavy metal resistance.  go_component mitochondrion|GO:0005739|15276431|IDA  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component plasma membrane|GO:0005886|16473969|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component plasma membrane|GO:0005886|17355438|IDA  go_component chloroplast|GO:0009507|16473969|IDA  go_process multidrug transport|GO:0006855|16506311|ISS  go_process systemic acquired resistance|GO:0009627|16473969|IMP  go_process defense response to fungus, incompatible interaction|GO:0009817|16473969|IMP  go_process cadmium ion transport|GO:0015691|17355438|IMP  go_process negative regulation of defense response|GO:0031348|16732289|IMP  go_process indole glucosinolate catabolic process|GO:0042344|19095898|IMP  go_process defense response to bacterium|GO:0042742|19095898|IMP  go_process callose deposition in cell wall during defense response|GO:0052544|19095898|IMP  go_function cadmium ion transmembrane transporter activity|GO:0015086|17355438|IDA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product PEN3 (PENETRATION 3); ATPase, coupled to transmembrane movement of substances / cadmium ion transmembrane transporter  note PENETRATION 3 (PEN3); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, cadmium ion transmembrane transporter activity; INVOLVED IN: in 8 processes; LOCATED IN: mitochondrion, plasma membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 (InterPro:IPR000412), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PDR7 (PLEIOTROPIC DRUG RESISTANCE 7); ATPase, coupled to transmembrane movement of substances (TAIR:AT1G15210.1); Has 227332 Blast hits to 163733 proteins in 2521 species: Archae - 4577; Bacteria - 162613; Metazoa - 8263; Fungi - 4807; Plants - 3368; Viruses - 4; Other Eukaryotes - 43700 (source: NCBI BLink).  protein_id AT1G59870.1p  transcript_id AT1G59870.1  protein_id AT1G59870.1p  transcript_id AT1G59870.1  
At1g59880	chr1:022040612	0.0	C/22040612-22040683	AT1G59880.1  tRNA  gene_syn 51305.TRNA-PRO-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: AGG)  transcript_id AT1G59880.1  
At1g59885	chr1:022042308	0.0	W/22042308-22042598,22042717-22042815	AT1G59885.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G59885.1p  transcript_id AT1G59885.1  protein_id AT1G59885.1p  transcript_id AT1G59885.1  
At1g59890	chr1:022044326	0.0	W/22044326-22044399,22044976-22045134,22045224-22045404,22045470-22045568,22045687-22045854,22046139-22046226,22046502-22046719,22046818-22046972,22047209-22047340,22047451-22047692,22047968-22048476,22048693-22049313,22049396-22049484,22049562-22049700,22049808-22049960,22050039-22050199,22050288-22050402,22050494-22050670	AT1G59890.1  CDS  gene_syn F23H11.20, F23H11_20, SIN3-LIKE 5, SNL5  gene SNL5  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function molecular_function|GO:0003674||ND  product SNL5 (SIN3-LIKE 5)  note SIN3-LIKE 5 (SNL5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SNL6 (SIN3-LIKE 6) (TAIR:AT1G10450.1); Has 1434 Blast hits to 545 proteins in 139 species: Archae - 0; Bacteria - 3; Metazoa - 713; Fungi - 404; Plants - 201; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).  protein_id AT1G59890.1p  transcript_id AT1G59890.1  protein_id AT1G59890.1p  transcript_id AT1G59890.1  
At1g59900	chr1:022051368	0.0	W/22051368-22052046,22052133-22052212,22052580-22052657,22053058-22053153,22053258-22053383,22053460-22053525,22053616-22053660	AT1G59900.1  CDS  gene_syn AT-E1 ALPHA, PYRUVATE DEHYDROGENASE E1 ALPHA SUBUNIT  gene AT-E1 ALPHA  function encodes the e1 alpha subunit of the pyruvate dehydrogenase complex (PDC)  go_component mitochondrion|GO:0005739|18385124|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function pyruvate dehydrogenase (acetyl-transferring) activity|GO:0004739||IEA  go_function oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor|GO:0016624||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process metabolic process|GO:0008152||ISS  go_function pyruvate dehydrogenase (acetyl-transferring) activity|GO:0004739||ISS  product AT-E1 ALPHA; oxidoreductase, acting on the aldehyde or oxo group of donors, disulfide as acceptor / pyruvate dehydrogenase (acetyl-transferring)  note AT-E1 ALPHA; FUNCTIONS IN: oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, pyruvate dehydrogenase (acetyl-transferring) activity; INVOLVED IN: response to cadmium ion, metabolic process; LOCATED IN: cytosol, mitochondrion, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrogenase, E1 component (InterPro:IPR001017), Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y (InterPro:IPR017597); BEST Arabidopsis thaliana protein match is: IAR4; oxidoreductase, acting on the aldehyde or oxo group of donors, disulfide as acceptor / pyruvate dehydrogenase (acetyl-transferring) (TAIR:AT1G24180.1); Has 6548 Blast hits to 6543 proteins in 1045 species: Archae - 46; Bacteria - 3051; Metazoa - 471; Fungi - 191; Plants - 121; Viruses - 0; Other Eukaryotes - 2668 (source: NCBI BLink).  protein_id AT1G59900.1p  transcript_id AT1G59900.1  protein_id AT1G59900.1p  transcript_id AT1G59900.1  
At1g59910	chr1:022055584	0.0	C/22055584-22057052,22054167-22055487	AT1G59910.1  CDS  gene_syn F23H11.22, F23H11_22  go_component plasma membrane|GO:0005886|17317660|IDA  go_process cellular component organization|GO:0016043||IEA  go_process actin cytoskeleton organization|GO:0030036||IEA  go_function actin binding|GO:0003779|12417149|ISS  go_function actin binding|GO:0003779|15256004|ISS  go_function actin binding|GO:0003779||ISS  product formin homology 2 domain-containing protein / FH2 domain-containing protein  note formin homology 2 domain-containing protein / FH2 domain-containing protein; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding FH2 and DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: ATFH8 (formin 8); actin binding / actin filament binding / profilin binding (TAIR:AT1G70140.1); Has 135050 Blast hits to 68451 proteins in 1960 species: Archae - 212; Bacteria - 21616; Metazoa - 62122; Fungi - 16769; Plants - 13217; Viruses - 3294; Other Eukaryotes - 17820 (source: NCBI BLink).  protein_id AT1G59910.1p  transcript_id AT1G59910.1  protein_id AT1G59910.1p  transcript_id AT1G59910.1  
At1g59920	chr1:022059424	0.0	C/22059424-22059822	AT1G59920.1  CDS  gene_syn F23H11.23, F23H11_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G59930.1); Has 199 Blast hits to 195 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 199; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G59920.1p  transcript_id AT1G59920.1  protein_id AT1G59920.1p  transcript_id AT1G59920.1  
At1g59930	chr1:022061083	0.0	C/22061083-22061481	AT1G59930.1  CDS  gene_syn F23H11.24, F23H11_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, leaf; EXPRESSED DURING: LP.06 six leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G59920.1); Has 199 Blast hits to 195 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 199; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G59930.1p  transcript_id AT1G59930.1  protein_id AT1G59930.1p  transcript_id AT1G59930.1  
At1g59940	chr1:022066721	0.0	C/22066721-22066895,22066567-22066643,22066417-22066494,22066267-22066337,22065894-22066188	AT1G59940.1  CDS  gene_syn ARR3, F23H11.25, F23H11_25, RESPONSE REGULATOR 3  gene ARR3  function Type A response regulator highly similar to bacterial two-component response regulators. Rapidly induced by cytokinin. Involved in red-light signaling. Acts redundantly with ARR3 in the control of circadian period in a cytokinin-independent manner.  go_component nucleus|GO:0005634|18642946|IDA  go_component cytoplasm|GO:0005737|18642946|IDA  go_process two-component signal transduction system (phosphorelay)|GO:0000160|9482949|IDA  go_process two-component signal transduction system (phosphorelay)|GO:0000160|9482949|TAS  go_process circadian rhythm|GO:0007623|16326927|IMP  go_process response to cytokinin stimulus|GO:0009735|9662428|IEP  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_process response to red light|GO:0010114|14973166|IMP  go_process red light signaling pathway|GO:0010161|14973166|IMP  go_process regulation of circadian rhythm|GO:0042752|16326927|IGI  go_function two-component response regulator activity|GO:0000156|11574878|ISS  go_function two-component response regulator activity|GO:0000156|12068096|ISS  go_function two-component response regulator activity|GO:0000156|9482949|IDA  go_function two-component response regulator activity|GO:0000156|9482949|ISS  go_function two-component response regulator activity|GO:0000156||ISS  go_function transcription regulator activity|GO:0030528|12068096|TAS  product ARR3 (RESPONSE REGULATOR 3); transcription regulator/ two-component response regulator  note RESPONSE REGULATOR 3 (ARR3); FUNCTIONS IN: transcription regulator activity, two-component response regulator activity; INVOLVED IN: in 7 processes; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: shoot apical meristem, root vascular system, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver region (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: ARR4 (RESPONSE REGULATOR 4); protein binding / transcription regulator/ two-component response regulator (TAIR:AT1G10470.1); Has 36615 Blast hits to 36157 proteins in 1580 species: Archae - 199; Bacteria - 30517; Metazoa - 11; Fungi - 381; Plants - 737; Viruses - 7; Other Eukaryotes - 4763 (source: NCBI BLink).  protein_id AT1G59940.1p  transcript_id AT1G59940.1  protein_id AT1G59940.1p  transcript_id AT1G59940.1  
At1g59950	chr1:022070278	0.0	C/22070278-22070588,22068963-22069206,22068666-22068845,22068033-22068260	AT1G59950.1  CDS  gene_syn F23H11.26, F23H11_26  go_process oxidation reduction|GO:0055114||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product aldo/keto reductase, putative  note aldo/keto reductase, putative; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: oxidation reduction; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Aldo/keto reductase, conserved site (InterPro:IPR018170); BEST Arabidopsis thaliana protein match is: aldo/keto reductase, putative (TAIR:AT1G59960.1); Has 11553 Blast hits to 11538 proteins in 1272 species: Archae - 159; Bacteria - 6414; Metazoa - 1616; Fungi - 1065; Plants - 853; Viruses - 0; Other Eukaryotes - 1446 (source: NCBI BLink).  protein_id AT1G59950.1p  transcript_id AT1G59950.1  protein_id AT1G59950.1p  transcript_id AT1G59950.1  
At1g59960	chr1:022072739	0.0	C/22072739-22073067,22072152-22072395,22071886-22072065,22071410-22071637	AT1G59960.1  CDS  gene_syn F23H11.27, F23H11_27  go_process response to salt stress|GO:0009651|17916636|IEP  go_function oxidoreductase activity|GO:0016491||IEA  product aldo/keto reductase, putative  note aldo/keto reductase, putative; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: response to salt stress; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Aldo/keto reductase, conserved site (InterPro:IPR018170); BEST Arabidopsis thaliana protein match is: aldo/keto reductase, putative (TAIR:AT1G59950.1); Has 10935 Blast hits to 10919 proteins in 1255 species: Archae - 155; Bacteria - 5812; Metazoa - 1532; Fungi - 1066; Plants - 853; Viruses - 0; Other Eukaryotes - 1517 (source: NCBI BLink).  protein_id AT1G59960.1p  transcript_id AT1G59960.1  protein_id AT1G59960.1p  transcript_id AT1G59960.1  
At1g59970	chr1:022073601	0.0	W/22073601-22074683	AT1G59970.1  CDS  gene_syn F23H11.28  go_component plasma membrane|GO:0005886|17317660|IDA  go_process proteolysis|GO:0006508||IEA  go_process metabolic process|GO:0008152||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_function metallopeptidase activity|GO:0008237||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process proteolysis|GO:0006508||ISS  go_function metalloendopeptidase activity|GO:0004222||ISS  product matrixin family protein  note matrixin family protein; FUNCTIONS IN: metallopeptidase activity, metalloendopeptidase activity; INVOLVED IN: proteolysis, metabolic process; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M10A and M12B, matrixin and adamalysin (InterPro:IPR001818), Peptidoglycan binding-like (InterPro:IPR002477), Peptidase, metallopeptidases (InterPro:IPR006026); BEST Arabidopsis thaliana protein match is: matrixin family protein (TAIR:AT1G24140.1); Has 2181 Blast hits to 2001 proteins in 159 species: Archae - 2; Bacteria - 62; Metazoa - 1907; Fungi - 4; Plants - 83; Viruses - 37; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT1G59970.1p  transcript_id AT1G59970.1  protein_id AT1G59970.1p  transcript_id AT1G59970.1  
At1g59980	chr1:022081069	0.0	W/22081069-22081214,22081362-22081485,22081717-22081799,22081928-22082039,22082143-22082247,22082342-22082392,22082596-22082685,22082776-22082884,22082979-22083181,22083270-22083491	AT1G59980.1  CDS  gene_syn ARF-LIKE 2, ARG1-LIKE 2, ARL2, ATDJC39, T2K10.3, T2K10_3  gene ARL2  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product ARL2 (ARG1-LIKE 2); heat shock protein binding / unfolded protein binding  note ARG1-LIKE 2 (ARL2); FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, embryo, carpel, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: ARL1 (ARG1-LIKE 1); heat shock protein binding / unfolded protein binding (TAIR:AT1G24120.1); Has 17570 Blast hits to 17566 proteins in 1954 species: Archae - 119; Bacteria - 5528; Metazoa - 3747; Fungi - 1659; Plants - 1347; Viruses - 51; Other Eukaryotes - 5119 (source: NCBI BLink).  protein_id AT1G59980.1p  transcript_id AT1G59980.1  protein_id AT1G59980.1p  transcript_id AT1G59980.1  
At1g59990	chr1:022092565	0.0	C/22092565-22092885,22092074-22092361,22091872-22091985,22091335-22091795,22090916-22091222,22090675-22090827,22090492-22090543,22090369-22090418	AT1G59990.1  CDS  gene_syn T2K10.4, T2K10_4  go_component chloroplast|GO:0009507|18431481|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_process biological_process|GO:0008150||ND  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD/DEAH box helicase, putative (RH22)  note DEAD/DEAH box helicase, putative (RH22); FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (RH17) (TAIR:AT2G40700.1); Has 37847 Blast hits to 22796 proteins in 1653 species: Archae - 327; Bacteria - 16288; Metazoa - 7255; Fungi - 5048; Plants - 2184; Viruses - 6; Other Eukaryotes - 6739 (source: NCBI BLink).  protein_id AT1G59990.1p  transcript_id AT1G59990.1  protein_id AT1G59990.1p  transcript_id AT1G59990.1  
At1g60000	chr1:022094094	0.0	C/22094094-22094540,22093678-22094007	AT1G60000.1  CDS  gene_syn T2K10.5, T2K10_5  go_component chloroplast|GO:0009507||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative  note 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative (TAIR:AT5G50250.1); Has 24898 Blast hits to 15911 proteins in 630 species: Archae - 20; Bacteria - 2092; Metazoa - 13644; Fungi - 2779; Plants - 3435; Viruses - 0; Other Eukaryotes - 2928 (source: NCBI BLink).  protein_id AT1G60000.1p  transcript_id AT1G60000.1  protein_id AT1G60000.1p  transcript_id AT1G60000.1  
At1g60000	chr1:022094345	0.0	C/22094345-22094540,22093704-22093807	AT1G60000.2  CDS  gene_syn T2K10.5, T2K10_5  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative  note 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G60000.2p  transcript_id AT1G60000.2  protein_id AT1G60000.2p  transcript_id AT1G60000.2  
At1g60010	chr1:022096149	0.0	C/22096149-22096434,22095925-22096055,22095660-22095764	AT1G60010.1  CDS  gene_syn T2K10.6, T2K10_6  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10530.1); Has 97 Blast hits to 97 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 92; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G60010.1p  transcript_id AT1G60010.1  protein_id AT1G60010.1p  transcript_id AT1G60010.1  
At1g60020	chr1:022100744	0.0	C/22100744-22105125	AT1G60020.1  mRNA_TE_gene  pseudo  gene_syn T2K10.7, T2K10_7  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to GB:AAC02672 polyprotein (Ty1_Copia-element) (Arabidopsis arenosa)  
At1g60025	chr1:022107346	0.0	W/22107346-22107456	AT1G60025.1  miRNA  gene_syn MICRORNA426, MIR426  gene MIR426  function Encodes a microRNA. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence:TTTTGGAAATTTGTCCTTACG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR426 (MICRORNA426); miRNA  transcript_id AT1G60025.1  
At1g60030	chr1:022116522	0.0	C/22116522-22116648,22116338-22116435,22116076-22116252,22115901-22116001,22115738-22115813,22115600-22115659,22115333-22115517,22115138-22115234,22114956-22115042,22114822-22114880,22114558-22114727,22114310-22114470,22113993-22114211	AT1G60030.1  CDS  gene_syn T2K10.8, T2K10_8  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_function transmembrane transporter activity|GO:0022857||ISS  product xanthine/uracil permease family protein  note xanthine/uracil permease family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Xanthine/uracil permease (InterPro:IPR006042), Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: xanthine/uracil permease family protein (TAIR:AT1G10540.1); Has 4997 Blast hits to 4979 proteins in 928 species: Archae - 37; Bacteria - 3600; Metazoa - 308; Fungi - 90; Plants - 295; Viruses - 1; Other Eukaryotes - 666 (source: NCBI BLink).  protein_id AT1G60030.1p  transcript_id AT1G60030.1  protein_id AT1G60030.1p  transcript_id AT1G60030.1  
At1g60040	chr1:022119075	0.0	C/22119075-22119929	AT1G60040.1  CDS  gene_syn AGAMOUS-LIKE 49, AGL49, T2K10.9, T2K10_9  gene AGL49  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product AGL49 (AGAMOUS-LIKE 49); transcription factor  note AGAMOUS-LIKE 49 (AGL49); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL50; transcription factor (TAIR:AT1G59810.1); Has 128 Blast hits to 128 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G60040.1p  transcript_id AT1G60040.1  protein_id AT1G60040.1p  transcript_id AT1G60040.1  
At1g60050	chr1:022123500	0.0	C/22123500-22123702,22123349-22123411,22122992-22123108,22122630-22122891,22122305-22122463,22122057-22122208,22121550-22121718	AT1G60050.1  CDS  gene_syn T2K10.10, T2K10_10  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product nodulin-related  note nodulin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT1G70260.1); Has 676 Blast hits to 660 proteins in 31 species: Archae - 0; Bacteria - 18; Metazoa - 0; Fungi - 0; Plants - 620; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT1G60050.1p  transcript_id AT1G60050.1  protein_id AT1G60050.1p  transcript_id AT1G60050.1  
At1g60060	chr1:022139282	0.0	W/22139282-22139418,22139636-22139686,22139790-22139975,22140428-22140533,22140707-22140748,22140864-22140920,22141004-22141585	AT1G60060.1  CDS  gene_syn T2K10.11, T2K10_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G53900.2); Has 3600 Blast hits to 2553 proteins in 66 species: Archae - 0; Bacteria - 2; Metazoa - 16; Fungi - 80; Plants - 126; Viruses - 0; Other Eukaryotes - 3376 (source: NCBI BLink).  protein_id AT1G60060.1p  transcript_id AT1G60060.1  protein_id AT1G60060.1p  transcript_id AT1G60060.1  
At1g60070	chr1:022149265	0.0	C/22149265-22149296,22148655-22148957,22148397-22148538,22147981-22148154,22147471-22147650,22147104-22147258,22146656-22146746,22146274-22146437,22146019-22146073,22145768-22145890,22145588-22145683,22145049-22145176,22144785-22144889,22144419-22144675,22143827-22144039,22143545-22143720,22143167-22143265,22142944-22143039	AT1G60070.1  CDS  gene_syn T2K10.12, T2K10_12  go_component Golgi apparatus|GO:0005794||IEA  go_component membrane coat|GO:0030117||IEA  go_component clathrin adaptor complex|GO:0030131||IEA  go_component Golgi apparatus part|GO:0044431||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process protein transport|GO:0015031||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function protein transporter activity|GO:0008565||IEA  go_function clathrin binding|GO:0030276||ISS  product binding / clathrin binding / protein binding / protein transporter  note binding / clathrin binding / protein binding / protein transporter; FUNCTIONS IN: protein transporter activity, protein binding, clathrin binding, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; LOCATED IN: membrane coat, Golgi apparatus part, Golgi apparatus, clathrin adaptor complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain (InterPro:IPR008152), Adaptor protein complex AP-1, gamma subunit (InterPro:IPR017107), Armadillo-like helical (InterPro:IPR011989), Clathrin adaptor, gamma-adaptin, appendage (InterPro:IPR008153), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain (InterPro:IPR013041); BEST Arabidopsis thaliana protein match is: GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1); binding / clathrin binding / protein binding / protein transporter (TAIR:AT1G23900.2); Has 2625 Blast hits to 2575 proteins in 190 species: Archae - 0; Bacteria - 4; Metazoa - 1290; Fungi - 597; Plants - 203; Viruses - 0; Other Eukaryotes - 531 (source: NCBI BLink).  protein_id AT1G60070.1p  transcript_id AT1G60070.1  protein_id AT1G60070.1p  transcript_id AT1G60070.1  
At1g60072	chr1:022149718	0.0	W/22149718-22149843	AT1G60072.1  miRNA  gene_syn MICRORNA859A, MIR859A  gene MIR859A  function Encodes a microRNA that targets several F-box family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCUCUCUGUUGUGAAGUCAAA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR859A (MICRORNA859A); miRNA  transcript_id AT1G60072.1  
At1g60073	chr1:022149936	0.0	W/22149936-22150033	AT1G60073.1  miRNA  gene_syn MICRORNA774A, MIR774A  gene MIR774A  function Encodes a microRNA that targets several F-box family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUGGUUACCCAUAUGGCCAUC  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR774A (MICRORNA774A); miRNA  transcript_id AT1G60073.1  
At1g60075	chr1:022150916	0.0	W/22150916-22152139	AT1G60075.1  pseudogenic_transcript  pseudo  note pseudogene, F-box protein-related, contains TIGRFAM TIGR01640 : F-box protein interaction domain  
At1g60080	chr1:022154180	0.0	C/22154180-22154339,22154046-22154095,22153896-22153965,22153711-22153816,22153549-22153615,22153334-22153409,22152759-22153066,22152605-22152676	AT1G60080.1  CDS  gene_syn T2K10.14, T2K10_14  go_process RNA processing|GO:0006396||IEA  go_function 3 -5 -exoribonuclease activity|GO:0000175||IEA  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process RNA processing|GO:0006396||ISS  go_function 3 -5 -exoribonuclease activity|GO:0000175||ISS  go_function RNA binding|GO:0003723||ISS  product 3  exoribonuclease family domain 1-containing protein  note 3  exoribonuclease family domain 1-containing protein; FUNCTIONS IN: 3 -5 -exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 2 (InterPro:IPR015847), Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247); BEST Arabidopsis thaliana protein match is: CER7 (ECERIFERUM 7); 3 -5 -exoribonuclease/ RNA binding (TAIR:AT3G60500.2); Has 1101 Blast hits to 1101 proteins in 231 species: Archae - 276; Bacteria - 31; Metazoa - 302; Fungi - 155; Plants - 93; Viruses - 0; Other Eukaryotes - 244 (source: NCBI BLink).  protein_id AT1G60080.1p  transcript_id AT1G60080.1  protein_id AT1G60080.1p  transcript_id AT1G60080.1  
At1g60090	chr1:022155582	0.0	W/22155582-22155710,22155786-22155849,22155934-22155983,22156064-22156139,22156217-22156288,22156373-22156460,22156540-22156792,22156862-22156977,22157053-22157261,22157378-22157409,22157490-22157577,22157624-22157750,22157831-22158065	AT1G60090.1  CDS  gene_syn BETA GLUCOSIDASE 4, BGLU4, T2K10.15, T2K10_15  gene BGLU4  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU4 (BETA GLUCOSIDASE 4); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 4 (BGLU4); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU3 (BETA GLUCOSIDASE 2); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT4G22100.1); Has 5654 Blast hits to 5414 proteins in 795 species: Archae - 102; Bacteria - 3082; Metazoa - 595; Fungi - 135; Plants - 844; Viruses - 0; Other Eukaryotes - 896 (source: NCBI BLink).  protein_id AT1G60090.1p  transcript_id AT1G60090.1  protein_id AT1G60090.1p  transcript_id AT1G60090.1  
At1g60095	chr1:022160099	0.0	W/22160099-22160113,22160247-22160693,22160773-22161210,22161287-22161730,22162014-22162265	AT1G60095.1  CDS  gene_syn T13D8.1, T13D8_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product jacalin lectin family protein  note jacalin lectin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G60110.1); Has 1280 Blast hits to 470 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1278; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G60095.1p  transcript_id AT1G60095.1  protein_id AT1G60095.1p  transcript_id AT1G60095.1  
At1g60110	chr1:022168502	0.0	W/22168502-22168708,22168791-22169228,22169333-22169764,22169855-22170322,22170398-22170649	AT1G60110.1  CDS  gene_syn T13D8.2, T13D8_2  product unknown protein  note EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin lectin family protein (TAIR:AT1G60130.1); Has 1392 Blast hits to 461 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1390; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G60110.1p  transcript_id AT1G60110.1  protein_id AT1G60110.1p  transcript_id AT1G60110.1  
At1g60120	chr1:022171633	0.0	C/22171633-22172685	AT1G60120.1  mRNA_TE_gene  pseudo  gene_syn T13D8.38  note Transposable element gene, gypsy-like retrotransposon family, has a 3.3e-38 P-value blast match to GB:226407 retrotransposon del1-46 (Gypsy_Ty3-element) (Lilium henryi)  
At1g60130	chr1:022174179	0.0	W/22174179-22174415,22174491-22174928,22175009-22175437,22175540-22175986,22176070-22176321	AT1G60130.1  CDS  gene_syn T13D8.3, T13D8_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product jacalin lectin family protein  note jacalin lectin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G60110.1); Has 1206 Blast hits to 439 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1205; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G60130.1p  transcript_id AT1G60130.1  protein_id AT1G60130.1p  transcript_id AT1G60130.1  
At1g60140	chr1:022178086	0.0	C/22178086-22180073,22177724-22177997,22177246-22177569	AT1G60140.1  CDS  gene_syn ATTPS10, T13D8.4, T13D8_4, TPS10, TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase  gene ATTPS10  function Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain.  go_process trehalose biosynthetic process|GO:0005992||IEA  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_process trehalose biosynthetic process|GO:0005992||ISS  go_function trehalose-phosphatase activity|GO:0004805||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product ATTPS10 (trehalose phosphate synthase); transferase, transferring glycosyl groups / trehalose-phosphatase  note trehalose phosphate synthase (ATTPS10); FUNCTIONS IN: transferase activity, transferring glycosyl groups, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Glycosyl transferase, family 20 (InterPro:IPR001830), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: ATTPS9; transferase, transferring glycosyl groups / trehalose-phosphatase (TAIR:AT1G23870.1); Has 2959 Blast hits to 2910 proteins in 629 species: Archae - 40; Bacteria - 1564; Metazoa - 132; Fungi - 471; Plants - 348; Viruses - 0; Other Eukaryotes - 404 (source: NCBI BLink).  protein_id AT1G60140.1p  transcript_id AT1G60140.1  protein_id AT1G60140.1p  transcript_id AT1G60140.1  
At1g60150	chr1:022182519	0.0	C/22182519-22183143	AT1G60150.1  mRNA_TE_gene  pseudo  gene_syn T13D8.37  note Transposable element gene, pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 28% identity and 3.6e-07 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}  
At1g60160	chr1:022191153	0.0	C/22191153-22191395,22190836-22191064,22190509-22190757,22190376-22190426,22190026-22190286,22189788-22189955,22189442-22189696,22188330-22189357	AT1G60160.1  CDS  gene_syn T13D8.5, T13D8_5  go_component chloroplast|GO:0009507|15028209|IDA  go_process potassium ion transport|GO:0006813||IEA  go_process potassium ion transport|GO:0006813||ISS  go_function potassium ion transmembrane transporter activity|GO:0015079||ISS  product potassium transporter family protein  note potassium transporter family protein; FUNCTIONS IN: potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Potassium uptake protein, kup (InterPro:IPR018519), K+ potassium transporter (InterPro:IPR003855); BEST Arabidopsis thaliana protein match is: KUP7; potassium ion transmembrane transporter (TAIR:AT5G09400.1); Has 2018 Blast hits to 2002 proteins in 590 species: Archae - 13; Bacteria - 1407; Metazoa - 0; Fungi - 55; Plants - 421; Viruses - 4; Other Eukaryotes - 118 (source: NCBI BLink).  protein_id AT1G60160.1p  transcript_id AT1G60160.1  protein_id AT1G60160.1p  transcript_id AT1G60160.1  
At1g60170	chr1:022193008	0.0	W/22193008-22193010,22193233-22193295,22193386-22194416,22194517-22194587,22194666-22194774,22194906-22194981,22195073-22195177	AT1G60170.1  CDS  gene_syn T13D8.6, T13D8_6, emb1220, embryo defective 1220  gene emb1220  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product emb1220 (embryo defective 1220)  note embryo defective 1220 (emb1220); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Pre-mRNA processing ribonucleoprotein, binding region (InterPro:IPR002687), NOSIC (InterPro:IPR012976); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70400.1); Has 1149 Blast hits to 1146 proteins in 253 species: Archae - 120; Bacteria - 0; Metazoa - 325; Fungi - 289; Plants - 120; Viruses - 0; Other Eukaryotes - 295 (source: NCBI BLink).  protein_id AT1G60170.1p  transcript_id AT1G60170.1  protein_id AT1G60170.1p  transcript_id AT1G60170.1  
At1g60180	chr1:022195525	0.0	C/22195525-22196685	AT1G60180.1  pseudogenic_transcript  pseudo  gene_syn T13D8.7, T13D8_7  function pseudogene of F-box family protein  note similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G18150.1); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101)  
At1g60190	chr1:022198403	0.0	W/22198403-22200463	AT1G60190.1  CDS  gene_syn T13D8.8, T13D8_8  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product armadillo/beta-catenin repeat family protein / U-box domain-containing protein  note armadillo/beta-catenin repeat family protein / U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, binding, zinc ion binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: PUB18 (PLANT U-BOX 18); ubiquitin-protein ligase (TAIR:AT1G10560.1); Has 1664 Blast hits to 1609 proteins in 143 species: Archae - 2; Bacteria - 20; Metazoa - 246; Fungi - 74; Plants - 1136; Viruses - 3; Other Eukaryotes - 183 (source: NCBI BLink).  protein_id AT1G60190.1p  transcript_id AT1G60190.1  protein_id AT1G60190.1p  transcript_id AT1G60190.1  
At1g60200	chr1:022204827	0.0	C/22204827-22205241,22203493-22203749,22203212-22203364,22202673-22203069,22201925-22202563,22201245-22201831,22200882-22201133	AT1G60200.1  CDS  gene_syn T13D8.9, T13D8_9  go_component chloroplast|GO:0009507||IEA  go_process mRNA processing|GO:0006397||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function nucleic acid binding|GO:0003676||ISS  product splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein  note splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Splicing factor PWI (InterPro:IPR002483); Has 120931 Blast hits to 65274 proteins in 2030 species: Archae - 263; Bacteria - 11023; Metazoa - 58881; Fungi - 13350; Plants - 8745; Viruses - 1502; Other Eukaryotes - 27167 (source: NCBI BLink).  protein_id AT1G60200.1p  transcript_id AT1G60200.1  protein_id AT1G60200.1p  transcript_id AT1G60200.1  
At1g60220	chr1:022208332	0.0	W/22208332-22208673,22208937-22208979,22209102-22209247,22209367-22209680,22209835-22209883,22210216-22210301,22210382-22210411,22210492-22210587,22210690-22210792,22210912-22211009,22211093-22211215,22211362-22211476,22211615-22211722,22211809-22211910	AT1G60220.1  CDS  gene_syn OTS1, OVERLY TOLERANT TO SALT 1, T13D8.11, T13D8_11, UB-LIKE PROTEASE 1D, ULP1D  gene ULP1D  function Encodes a deSUMOylating enzyme. In vitro it has both peptidase activity and isopeptidase activity: it can cleave C-terminal residues from SUMO to activate it for attachment to a target protein and it can also act on the isopeptide bond between SUMO and another protein. sGFP:OTS1 protein accumulates in the nucleus. Double mutant analysis with ULP1C/OTS2 indicates that these genes are involved in salt stress responses and flowering time regulation. Over-expression of 35S:OTS1 increases salt tolerance and reduces the level of SUMO-conjugated proteins. OTS1 transcript levels do not appear to change in response to salt, but, salt stress reduces the level of OTS1 protein in a proteasome-dependent manner.  go_component nucleus|GO:0005634|18849491|IDA  go_process proteolysis|GO:0006508||ISS  go_process response to salt stress|GO:0009651|18849491|IGI  go_process vegetative to reproductive phase transition|GO:0010228|18849491|IGI  go_process protein desumoylation|GO:0016926|16740136|IDA  go_function cysteine-type peptidase activity|GO:0008234||ISS  go_function SUMO-specific protease activity|GO:0016929|16740136|IDA  product ULP1D (UB-LIKE PROTEASE 1D); SUMO-specific protease/ cysteine-type peptidase  note UB-LIKE PROTEASE 1D (ULP1D); FUNCTIONS IN: cysteine-type peptidase activity, SUMO-specific protease activity; INVOLVED IN: response to salt stress, proteolysis, protein desumoylation, vegetative to reproductive phase transition; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: OTS2 (OVERLY TOLERANT TO SALT 2); SUMO-specific protease/ cysteine-type peptidase (TAIR:AT1G10570.2); Has 2148 Blast hits to 1938 proteins in 178 species: Archae - 0; Bacteria - 12; Metazoa - 1180; Fungi - 327; Plants - 178; Viruses - 13; Other Eukaryotes - 438 (source: NCBI BLink).  protein_id AT1G60220.1p  transcript_id AT1G60220.1  protein_id AT1G60220.1p  transcript_id AT1G60220.1  
At1g60230	chr1:022214094	0.0	C/22214094-22214346,22213944-22214008,22213757-22213859,22213574-22213671,22213318-22213448,22213133-22213241,22212837-22213028,22212631-22212767,22212223-22212511	AT1G60230.1  CDS  gene_syn T13D8.12, T13D8_12  go_component cytoplasm|GO:0005737||IEA  go_process rRNA processing|GO:0006364||IEA  go_function catalytic activity|GO:0003824||IEA  go_function RNA methyltransferase activity|GO:0008173||IEA  go_function iron-sulfur cluster binding|GO:0051536||IEA  product radical SAM domain-containing protein  note radical SAM domain-containing protein; FUNCTIONS IN: iron-sulfur cluster binding, catalytic activity, RNA methyltransferase activity; INVOLVED IN: rRNA processing; LOCATED IN: cytoplasm; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Conserved hypothetical protein CHP00048 (InterPro:IPR004383), Radical SAM (InterPro:IPR007197); BEST Arabidopsis thaliana protein match is: radical SAM domain-containing protein (TAIR:AT3G19630.1); Has 4619 Blast hits to 4616 proteins in 1263 species: Archae - 3; Bacteria - 2856; Metazoa - 0; Fungi - 0; Plants - 79; Viruses - 5; Other Eukaryotes - 1676 (source: NCBI BLink).  protein_id AT1G60230.1p  transcript_id AT1G60230.1  protein_id AT1G60230.1p  transcript_id AT1G60230.1  
At1g60240	chr1:022215419	0.0	C/22215419-22215946	AT1G60240.1  CDS  gene_syn T13D8.13, T13D8_13  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product apical meristem formation protein-related  note apical meristem formation protein-related; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: apical meristem formation protein-related (TAIR:AT1G60340.1); Has 44 Blast hits to 31 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G60240.1p  transcript_id AT1G60240.1  protein_id AT1G60240.1p  transcript_id AT1G60240.1  
At1g60250	chr1:022217077	0.0	C/22217077-22217832	AT1G60250.1  CDS  gene_syn T13D8.14, T13D8_14  go_component intracellular|GO:0005622||IEA  go_component endomembrane system|GO:0012505||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (B-box type) family protein  note zinc finger (B-box type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: endomembrane system, intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: zinc finger (B-box type) family protein (TAIR:AT1G68190.1); Has 522 Blast hits to 503 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 513; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G60250.1p  transcript_id AT1G60250.1  protein_id AT1G60250.1p  transcript_id AT1G60250.1  
At1g60260	chr1:022218788	0.0	C/22218788-22221401	AT1G60260.1  pseudogenic_transcript  pseudo  gene_syn BETA GLUCOSIDASE 5, BGLU5, T13D8.15, T13D8_15  gene BGLU5  note pseudogene, glycosyl hydrolase family 1, contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to amygdalin hydrolase isoform AH I precursor (GI:16757966) (Prunus serotina); blastp match of 60% identity and 6.4e-121 P-value to GP|12746303|gb|AAK07429.1|AF321287_1|AF321287 beta-glucosidase {Musa acuminata}  
At1g60270	chr1:022221726	0.0	C/22221726-22224257	AT1G60270.1  pseudogenic_transcript  pseudo  gene_syn BETA GLUCOSIDASE 6, BGLU6, T13D8.16, T13D8_16  gene BGLU6  note pseudogene, glycosyl hydrolase family 1, contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to hydroxyisourate hydrolase (GI:19569603) (Glycine max); blastp match of 57% identity and 2.8e-127 P-value to GP|12746303|gb|AAK07429.1|AF321287_1|AF321287 beta-glucosidase {Musa acuminata}  
At1g60280	chr1:022226885	0.0	C/22226885-22227928	AT1G60280.1  CDS  gene_syn ANAC023, Arabidopsis NAC domain containing protein 23, T13D8.17, T13D8_17  gene ANAC023  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ANAC023 (Arabidopsis NAC domain containing protein 23); transcription factor  note Arabidopsis NAC domain containing protein 23 (ANAC023); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac024 (Arabidopsis NAC domain containing protein 24); transcription factor (TAIR:AT1G60350.1); Has 850 Blast hits to 842 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 850; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G60280.1p  transcript_id AT1G60280.1  protein_id AT1G60280.1p  transcript_id AT1G60280.1  
At1g60290	chr1:022228700	0.0	C/22228700-22228977	AT1G60290.1  pseudogenic_transcript  pseudo  gene_syn T13D8.36  note pseudogene, similar to Chalcone--flavonone isomerase (EC 5.5.1.6) (Chalcone isomerase). (Radish), blastp match of 70% identity and 1.7e-11 P-value to SP|O22651|CFI_RAPSA Chalcone--flavonone isomerase (EC 5.5.1.6) (Chalcone isomerase). (Radish) {Raphanus sativus}  
At1g60300	chr1:022229780	0.0	C/22229780-22230748	AT1G60300.1  CDS  gene_syn T13D8.18, T13D8_18  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product apical meristem formation protein-related  note apical meristem formation protein-related; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: apical meristem formation protein-related (TAIR:AT1G60340.1); Has 568 Blast hits to 560 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 568; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G60300.1p  transcript_id AT1G60300.1  protein_id AT1G60300.1p  transcript_id AT1G60300.1  
At1g60310	chr1:022231188	0.0	C/22231188-22232737	AT1G60310.1  mRNA_TE_gene  pseudo  gene_syn T13D8.19  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 9.0e-12 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At1g60320	chr1:022235091	0.0	W/22235091-22235606	AT1G60320.1  CDS  gene_syn T13D8.20, T13D8_20  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_process defense response|GO:0006952||ISS  product Toll-Interleukin-Resistance (TIR) domain-containing protein  note Toll-Interleukin-Resistance (TIR) domain-containing protein; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Toll-Interleukin-Resistance (TIR) domain-containing protein (TAIR:AT1G57830.1); Has 853 Blast hits to 811 proteins in 37 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 852; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G60320.1p  transcript_id AT1G60320.1  protein_id AT1G60320.1p  transcript_id AT1G60320.1  
At1g60330	chr1:022238008	0.0	C/22238008-22238362	AT1G60330.1  pseudogenic_transcript  pseudo  gene_syn T13D8.34  note pseudogene, similar to Chalcone--flavonone isomerase (EC 5.5.1.6) (Chalcone isomerase). (Radish), blastp match of 69% identity and 5.0e-13 P-value to SP|O22651|CFI_RAPSA Chalcone--flavonone isomerase (EC 5.5.1.6) (Chalcone isomerase). (Radish) {Raphanus sativus}  
At1g60340	chr1:022239524	0.0	C/22239524-22240399,22238734-22238973	AT1G60340.1  CDS  gene_syn T13D8.21, T13D8_21  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product apical meristem formation protein-related  note apical meristem formation protein-related; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: apical meristem formation protein-related (TAIR:AT1G60300.1); Has 342 Blast hits to 331 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 342; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G60340.1p  transcript_id AT1G60340.1  protein_id AT1G60340.1p  transcript_id AT1G60340.1  
At1g60350	chr1:022241273	0.0	C/22241273-22242235	AT1G60350.1  CDS  gene_syn Arabidopsis NAC domain containing protein 24, T13D8.22, T13D8_22, anac024  gene anac024  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac024 (Arabidopsis NAC domain containing protein 24); transcription factor  note Arabidopsis NAC domain containing protein 24 (anac024); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: apical meristem formation protein-related (TAIR:AT1G60300.1); Has 978 Blast hits to 955 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 978; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G60350.1p  transcript_id AT1G60350.1  protein_id AT1G60350.1p  transcript_id AT1G60350.1  
At1g60360	chr1:022242748	0.0	C/22242748-22243731	AT1G60360.1  CDS  gene_syn T13D8.23, T13D8_23  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G19950.1); Has 6858 Blast hits to 6840 proteins in 208 species: Archae - 0; Bacteria - 6; Metazoa - 2410; Fungi - 686; Plants - 2545; Viruses - 15; Other Eukaryotes - 1196 (source: NCBI BLink).  protein_id AT1G60360.1p  transcript_id AT1G60360.1  protein_id AT1G60360.1p  transcript_id AT1G60360.1  
At1g60370	chr1:022244963	0.0	W/22244963-22245814	AT1G60370.1  CDS  gene_syn T13D8.24, T13D8_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G42430.1); Has 601 Blast hits to 587 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 601; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G60370.1p  transcript_id AT1G60370.1  protein_id AT1G60370.1p  transcript_id AT1G60370.1  
At1g60380	chr1:022246455	0.0	C/22246455-22247411	AT1G60380.1  CDS  gene_syn T13D8.25, T13D8_25  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product apical meristem formation protein-related  note apical meristem formation protein-related; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac024 (Arabidopsis NAC domain containing protein 24); transcription factor (TAIR:AT1G60350.1); Has 227 Blast hits to 222 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 227; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G60380.1p  transcript_id AT1G60380.1  protein_id AT1G60380.1p  transcript_id AT1G60380.1  
At1g60390	chr1:022249497	0.0	C/22249497-22249556,22247611-22249425	AT1G60390.1  CDS  gene_syn T13D8.26, T13D8_26  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function polygalacturonase activity|GO:0004650||ISS  product BURP domain-containing protein / polygalacturonase, putative  note BURP domain-containing protein / polygalacturonase, putative; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: BURP (InterPro:IPR004873); BEST Arabidopsis thaliana protein match is: BURP domain-containing protein / polygalacturonase, putative (TAIR:AT1G70370.1); Has 2719 Blast hits to 1914 proteins in 301 species: Archae - 2; Bacteria - 473; Metazoa - 543; Fungi - 321; Plants - 395; Viruses - 4; Other Eukaryotes - 981 (source: NCBI BLink).  protein_id AT1G60390.1p  transcript_id AT1G60390.1  protein_id AT1G60390.1p  transcript_id AT1G60390.1  
At1g60400	chr1:022254405	0.0	W/22254405-22255310,22255397-22255540,22255637-22255798	AT1G60400.1  CDS  gene_syn T13D8.27, T13D8_27  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G60410.1); Has 1323 Blast hits to 1292 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1323; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G60400.1p  transcript_id AT1G60400.1  protein_id AT1G60400.1p  transcript_id AT1G60400.1  
At1g60410	chr1:022259129	0.0	W/22259129-22260028,22260119-22260259,22260347-22260526	AT1G60410.1  CDS  gene_syn T13D8.28, T13D8_28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G60400.1); Has 1161 Blast hits to 1132 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1161; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G60410.1p  transcript_id AT1G60410.1  protein_id AT1G60410.1p  transcript_id AT1G60410.1  
At1g60420	chr1:022261978	0.0	W/22261978-22262082,22262378-22262857,22263002-22263481,22263572-22264243	AT1G60420.1  CDS  gene_syn T13D8.29, T13D8_29  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function antioxidant activity|GO:0016209||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: oxidoreductase activity, antioxidant activity; INVOLVED IN: response to cadmium ion; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336), C1-like (InterPro:IPR011424), Thioredoxin, conserved site (InterPro:IPR017937); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31240.2); Has 3975 Blast hits to 2347 proteins in 487 species: Archae - 4; Bacteria - 2021; Metazoa - 544; Fungi - 2; Plants - 263; Viruses - 0; Other Eukaryotes - 1141 (source: NCBI BLink).  protein_id AT1G60420.1p  transcript_id AT1G60420.1  protein_id AT1G60420.1p  transcript_id AT1G60420.1  
At1g60430	chr1:022265680	0.0	C/22265680-22265682,22265374-22265482,22265029-22265298,22264797-22264939	AT1G60430.1  CDS  gene_syn ARPC3, T13D8.30, T13D8_30, actin-related protein C3  gene ARPC3  go_component Arp2/3 protein complex|GO:0005885|15653407|TAS  go_process actin filament organization|GO:0007015|10572033|TAS  go_function structural molecule activity|GO:0005198||ISS  product ARPC3 (actin-related protein C3); structural molecule  note actin-related protein C3 (ARPC3); FUNCTIONS IN: structural molecule activity; INVOLVED IN: actin filament organization; LOCATED IN: Arp2/3 protein complex; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ARP2/3 complex, p21-Arc subunit (InterPro:IPR007204); Has 329 Blast hits to 329 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 182; Fungi - 88; Plants - 19; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT1G60430.1p  transcript_id AT1G60430.1  protein_id AT1G60430.1p  transcript_id AT1G60430.1  
At1g60430	chr1:022265680	0.0	C/22265680-22265682,22265374-22265482,22265029-22265298,22264797-22264939	AT1G60430.2  CDS  gene_syn ARPC3, T13D8.30, T13D8_30, actin-related protein C3  gene ARPC3  go_component Arp2/3 protein complex|GO:0005885|15653407|TAS  go_process actin filament organization|GO:0007015|10572033|TAS  go_function structural molecule activity|GO:0005198||ISS  product ARPC3 (actin-related protein C3); structural molecule  note actin-related protein C3 (ARPC3); FUNCTIONS IN: structural molecule activity; INVOLVED IN: actin filament organization; LOCATED IN: Arp2/3 protein complex; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ARP2/3 complex, p21-Arc subunit (InterPro:IPR007204); Has 329 Blast hits to 329 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 182; Fungi - 88; Plants - 19; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT1G60430.2p  transcript_id AT1G60430.2  protein_id AT1G60430.2p  transcript_id AT1G60430.2  
At1g60440	chr1:022269028	0.0	C/22269028-22269070,22268752-22268916,22268540-22268586,22268317-22268433,22267772-22267891,22267588-22267682,22267420-22267513,22267192-22267323,22266984-22267096,22266653-22266878	AT1G60440.1  CDS  gene_syn ATCOAA, ATPANK1, PANTOTHENATE KINASE 1, T13D8.31, T13D8_31  gene ATPANK1  function The gene AT1G60440 encodes pantothenate kinase 1. Its molecular function was shown to phosphorylate pantothenate to form 4 -phosphopantothenate.  go_component cellular_component|GO:0005575||ND  go_process acetyl-CoA biosynthetic process|GO:0006085||ISS  go_process coenzyme A biosynthetic process|GO:0015937|12860978|IDA  go_function pantothenate kinase activity|GO:0004594|12860978|IDA  go_function pantothenate kinase activity|GO:0004594||ISS  product ATPANK1 (PANTOTHENATE KINASE 1); pantothenate kinase  note PANTOTHENATE KINASE 1 (ATPANK1); FUNCTIONS IN: pantothenate kinase activity; INVOLVED IN: acetyl-CoA biosynthetic process, coenzyme A biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Fumble (InterPro:IPR011602), Eukaryotic pantothenate kinase (InterPro:IPR004567); BEST Arabidopsis thaliana protein match is: ATPANK2 (PANTOTHENATE KINASE 2); pantothenate kinase (TAIR:AT4G32180.3); Has 807 Blast hits to 793 proteins in 217 species: Archae - 2; Bacteria - 141; Metazoa - 271; Fungi - 97; Plants - 47; Viruses - 0; Other Eukaryotes - 249 (source: NCBI BLink).  protein_id AT1G60440.1p  transcript_id AT1G60440.1  protein_id AT1G60440.1p  transcript_id AT1G60440.1  
At1g60450	chr1:022272897	0.0	C/22272897-22273214,22272061-22272384,22271792-22271926,22271226-22271447	AT1G60450.1  CDS  gene_syn Arabidopsis thaliana galactinol synthase 7, AtGolS7, T13D8.32, T13D8_32  gene AtGolS7  go_component cellular_component|GO:0005575||ND  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product AtGolS7 (Arabidopsis thaliana galactinol synthase 7); transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note Arabidopsis thaliana galactinol synthase 7 (AtGolS7); FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: AtGolS4 (Arabidopsis thaliana galactinol synthase 4); transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT1G60470.1); Has 787 Blast hits to 786 proteins in 182 species: Archae - 0; Bacteria - 50; Metazoa - 225; Fungi - 169; Plants - 235; Viruses - 61; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G60450.1p  transcript_id AT1G60450.1  protein_id AT1G60450.1p  transcript_id AT1G60450.1  
At1g60460	chr1:022275600	0.0	W/22275600-22275638,22275737-22275845,22275952-22276035,22276198-22276224,22276436-22276544,22276642-22276717,22277142-22277162,22277293-22277489,22277627-22277771,22277855-22278169,22278266-22278536,22278798-22278886	AT1G60460.1  CDS  gene_syn F8A5.1, F8A5_1  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 15 Blast hits to 15 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G60460.1p  transcript_id AT1G60460.1  protein_id AT1G60460.1p  transcript_id AT1G60460.1  
At1g60460	chr1:022275600	0.0	W/22275600-22275638,22275737-22275845,22275952-22276035,22276198-22276224,22276436-22276544,22276642-22276717,22277142-22277162,22277293-22277489,22277627-22277771,22277855-22278169,22278266-22278565	AT1G60460.3  CDS  gene_syn F8A5.1, F8A5_1  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 15 Blast hits to 15 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G60460.3p  transcript_id AT1G60460.3  protein_id AT1G60460.3p  transcript_id AT1G60460.3  
At1g60460	chr1:022275610	0.0	W/22275610-22275638,22275760-22275845,22275952-22276035,22276198-22276224,22276436-22276544,22276642-22276717,22277142-22277162,22277293-22277489,22277627-22277771,22277855-22278169,22278266-22278565	AT1G60460.2  CDS  gene_syn F8A5.1, F8A5_1  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 15 Blast hits to 15 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G60460.2p  transcript_id AT1G60460.2  protein_id AT1G60460.2p  transcript_id AT1G60460.2  
At1g60470	chr1:022280128	0.0	C/22280128-22280454,22279716-22280039,22279481-22279615,22279181-22279399	AT1G60470.1  CDS  gene_syn Arabidopsis thaliana galactinol synthase 4, AtGolS4, F8A5.2, F8A5_2  gene AtGolS4  go_component cellular_component|GO:0005575||ND  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product AtGolS4 (Arabidopsis thaliana galactinol synthase 4); transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note Arabidopsis thaliana galactinol synthase 4 (AtGolS4); FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: AtGolS7 (Arabidopsis thaliana galactinol synthase 7); transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT1G60450.1); Has 863 Blast hits to 862 proteins in 197 species: Archae - 0; Bacteria - 62; Metazoa - 225; Fungi - 181; Plants - 280; Viruses - 66; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT1G60470.1p  transcript_id AT1G60470.1  protein_id AT1G60470.1p  transcript_id AT1G60470.1  
At1g60480	chr1:022284122	0.0	C/22284122-22285076	AT1G60480.1  pseudogenic_transcript  pseudo  gene_syn F8A5.3  note pseudogene, putative ADP-ribosylation factor, similar to ADP-ribosylation factor GI:166586 from (Arabidopsis thaliana); blastp match of 100% identity and 7.4e-53 P-value to GP|17154685|emb|CAD12855.1||AJ421017 ADP-ribosylation factor {Gossypium hirsutum}  
At1g60490	chr1:022290079	0.0	C/22290079-22290190,22289877-22289973,22289669-22289765,22289424-22289582,22289114-22289323,22288813-22288991,22288485-22288632,22288310-22288405,22288057-22288192,22287825-22287946,22287296-22287487,22287001-22287174,22286790-22286927,22286519-22286673,22286285-22286428,22286041-22286188,22285792-22285929	AT1G60490.1  CDS  gene_syn ATVPS34, F8A5.4, F8A5_4, PHOSPHATIDYLINOSITOL 3-KINASE, VACUOLAR PROTEIN SORTING 34, VPS34  gene ATVPS34  function Encodes a phosphatidylinositol 3-kinase that is expressed in most plant tissues. Defects in VPS34 affect a number of celluar processes. Loss of function mutations are not transmitted through the male gametophyte due to defects in microgametogenesis therefore it is difficult to assess the effects of loss of VPS34 function in the whole plant.  go_component phosphoinositide 3-kinase complex|GO:0005942||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function inositol or phosphatidylinositol kinase activity|GO:0004428||IEA  go_function binding|GO:0005488||IEA  go_function 1-phosphatidylinositol-3-kinase activity|GO:0016303||IEA  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_process microgametogenesis|GO:0055046|18408046|IMP  go_function 1-phosphatidylinositol-3-kinase activity|GO:0016303||ISS  product ATVPS34; 1-phosphatidylinositol-3-kinase/ binding / inositol or phosphatidylinositol kinase/ phosphotransferase, alcohol group as acceptor  note ATVPS34; FUNCTIONS IN: 1-phosphatidylinositol-3-kinase activity, inositol or phosphatidylinositol kinase activity, binding, phosphotransferase activity, alcohol group as acceptor; INVOLVED IN: N-terminal protein myristoylation, microgametogenesis; LOCATED IN: phosphoinositide 3-kinase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3- and 4-kinase, catalytic (InterPro:IPR000403), Phosphoinositide 3-kinase accessory region PIK (InterPro:IPR001263), Phosphoinositide 3-kinase, C2 (InterPro:IPR002420), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Protein kinase-like (InterPro:IPR011009), Phosphatidylinositol Kinase (InterPro:IPR015433), Phosphatidylinositol 3-kinase, Vps34 type (InterPro:IPR008290), Armadillo-type fold (InterPro:IPR016024), Phosphatidylinositol 3- and 4-kinase, conserved site (InterPro:IPR018936); BEST Arabidopsis thaliana protein match is: ATPI4K ALPHA; 1-phosphatidylinositol 4-kinase/ inositol or phosphatidylinositol kinase (TAIR:AT1G49340.2); Has 2640 Blast hits to 2525 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 1248; Fungi - 556; Plants - 145; Viruses - 4; Other Eukaryotes - 687 (source: NCBI BLink).  protein_id AT1G60490.1p  transcript_id AT1G60490.1  protein_id AT1G60490.1p  transcript_id AT1G60490.1  
At1g60500	chr1:022291582	0.0	W/22291582-22292014,22292246-22293822	AT1G60500.1  CDS  gene_syn F8A5.5, F8A5_5  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function GTPase activity|GO:0003924||ISS  go_function GTP binding|GO:0005525||ISS  product dynamin family protein  note dynamin family protein; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130), Dynamin, GTPase region (InterPro:IPR001401), Dynamin central region (InterPro:IPR000375), Interferon-induced Mx protein (InterPro:IPR015577); BEST Arabidopsis thaliana protein match is: dynamin family protein (TAIR:AT1G60530.1); Has 1952 Blast hits to 1936 proteins in 221 species: Archae - 0; Bacteria - 0; Metazoa - 917; Fungi - 522; Plants - 274; Viruses - 0; Other Eukaryotes - 239 (source: NCBI BLink).  protein_id AT1G60500.1p  transcript_id AT1G60500.1  protein_id AT1G60500.1p  transcript_id AT1G60500.1  
At1g60505	chr1:022294384	0.0	C/22294384-22296113	AT1G60505.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G60510  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G60505.2  
At1g60505	chr1:022294677	0.0	C/22294677-22297220	AT1G60505.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G60510  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G60505.1  
At1g60510	chr1:022294722	0.0	W/22294722-22297139	AT1G60510.1  pseudogenic_transcript  pseudo  gene_syn F8A5.6  note pseudogene, putative interferon-induced GTP-binding protein mx, blastp match of 42% identity and 8.3e-35 P-value to GP|1399454|gb|AAC60215.1||U47946 RBTMx3 {Oncorhynchus mykiss}  
At1g60520	chr1:022297973	0.0	W/22297973-22298736	AT1G60520.1  pseudogenic_transcript  pseudo  gene_syn F8A5.33  note pseudogene, putative interferon-induced GTP-binding protein mx, blastp match of 52% identity and 3.4e-13 P-value to GP|28475259|emb|CAD67756.1||AJ544824 MxB protein {Danio rerio}  
At1g60525	chr1:022299526	0.0	C/22299526-22301343	AT1G60525.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G60530  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G60525.2  
At1g60525	chr1:022299541	0.0	C/22299541-22301305	AT1G60525.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G60530  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G60525.1  
At1g60530	chr1:022299797	0.0	W/22299797-22300220,22300686-22301167	AT1G60530.1  CDS  gene_syn F8A5.7, F8A5_7  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function GTP binding|GO:0005525||ISS  product dynamin family protein  note dynamin family protein; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Dynamin, GTPase region (InterPro:IPR001401), Interferon-induced Mx protein (InterPro:IPR015577); BEST Arabidopsis thaliana protein match is: dynamin family protein (TAIR:AT1G60500.1); Has 1943 Blast hits to 1924 proteins in 221 species: Archae - 0; Bacteria - 0; Metazoa - 915; Fungi - 520; Plants - 269; Viruses - 0; Other Eukaryotes - 239 (source: NCBI BLink).  protein_id AT1G60530.1p  transcript_id AT1G60530.1  protein_id AT1G60530.1p  transcript_id AT1G60530.1  
At1g60540	chr1:022302486	0.0	C/22302486-22304985	AT1G60540.1  pseudogenic_transcript  pseudo  gene_syn F8A5.8, F8A5_8  function pseudogene of the dynamin family  
At1g60545	chr1:022302492	0.0	W/22302492-22305156	AT1G60545.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G60540  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G60545.1  
At1g60550	chr1:022307826	0.0	C/22307826-22308092,22307602-22307724,22307177-22307278,22307042-22307080,22306840-22306938,22306683-22306730,22306506-22306601,22306274-22306396,22305988-22306104	AT1G60550.1  CDS  gene_syn DHNS, ECHID, ENOYL-COA HYDRATASE/ISOMERASE D, F8A5.9, F8A5_9  gene ECHID  go_component peroxisome|GO:0005777|17951448|IDA  go_process metabolic process|GO:0008152||IEA  go_process menaquinone biosynthetic process|GO:0009234||IEA  go_function catalytic activity|GO:0003824||IEA  go_function naphthoate synthase activity|GO:0008935||IEA  go_process vitamin K biosynthetic process|GO:0042371||ISS  go_function naphthoate synthase activity|GO:0008935||ISS  product ECHID (ENOYL-COA HYDRATASE/ISOMERASE D); catalytic/ naphthoate synthase  note ENOYL-COA HYDRATASE/ISOMERASE D (ECHID); FUNCTIONS IN: naphthoate synthase activity, catalytic activity; INVOLVED IN: vitamin K biosynthetic process, metabolic process, menaquinone biosynthetic process; LOCATED IN: peroxisome; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Enoyl-CoA hydratase/isomerase, conserved site (InterPro:IPR018376), Naphthoate synthase (InterPro:IPR010198), Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A); catalytic (TAIR:AT4G16210.1); Has 24987 Blast hits to 24986 proteins in 1283 species: Archae - 197; Bacteria - 14016; Metazoa - 1333; Fungi - 490; Plants - 307; Viruses - 0; Other Eukaryotes - 8644 (source: NCBI BLink).  protein_id AT1G60550.1p  transcript_id AT1G60550.1  protein_id AT1G60550.1p  transcript_id AT1G60550.1  
At1g60560	chr1:022311009	0.0	C/22311009-22311277,22310275-22310926,22309992-22310191,22309653-22309897,22308791-22309536	AT1G60560.1  CDS  gene_syn F8A5.10, F8A5_10  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product SWIM zinc finger family protein  note SWIM zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT4G13970.1); Has 44 Blast hits to 44 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 2; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G60560.1p  transcript_id AT1G60560.1  protein_id AT1G60560.1p  transcript_id AT1G60560.1  
At1g60560	chr1:022311009	0.0	C/22311009-22311277,22310275-22310926,22309992-22310191,22309653-22309897,22309401-22309536,22309321-22309321	AT1G60560.2  CDS  gene_syn F8A5.10, F8A5_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product SWIM zinc finger family protein  note SWIM zinc finger family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT4G13970.1); Has 41 Blast hits to 41 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G60560.2p  transcript_id AT1G60560.2  protein_id AT1G60560.2p  transcript_id AT1G60560.2  
At1g60570	chr1:022311836	0.0	W/22311836-22312981	AT1G60570.1  CDS  gene_syn F8A5.11, F8A5_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT1G19930.1); Has 1435 Blast hits to 1363 proteins in 126 species: Archae - 8; Bacteria - 62; Metazoa - 554; Fungi - 7; Plants - 638; Viruses - 128; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT1G60570.1p  transcript_id AT1G60570.1  protein_id AT1G60570.1p  transcript_id AT1G60570.1  
At1g60580	chr1:022313414	0.0	C/22313414-22313484	AT1G60580.1  tRNA  gene_syn 50820.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: GCC)  transcript_id AT1G60580.1  
At1g60590	chr1:022316448	0.0	C/22316448-22316867,22315938-22316069,22315622-22315852,22315483-22315527,22315185-22315392,22314908-22315098,22314426-22314821	AT1G60590.1  CDS  gene_syn F8A5.12, F8A5_12  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product polygalacturonase, putative / pectinase, putative  note polygalacturonase, putative / pectinase, putative; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: polygalacturonase (TAIR:AT1G10640.1); Has 2761 Blast hits to 2721 proteins in 355 species: Archae - 2; Bacteria - 501; Metazoa - 142; Fungi - 1011; Plants - 979; Viruses - 3; Other Eukaryotes - 123 (source: NCBI BLink).  protein_id AT1G60590.1p  transcript_id AT1G60590.1  protein_id AT1G60590.1p  transcript_id AT1G60590.1  
At1g60600	chr1:022326366	0.0	C/22326366-22326395,22326181-22326284,22326016-22326087,22325789-22325927,22325606-22325712,22325420-22325519,22325307-22325345,22325111-22325221,22324967-22325032,22324807-22324902	AT1G60600.1  CDS  gene_syn 1,4-DIHYDROXY-2-NAPTHOIC ACID PHYTYLTRANSFERASE, ABC4, ABERRANT CHLOROPLAST DEVELOPMENT 4, F8A5.36, F8A5_36  gene ABC4  function Encodes a protein similar to 1,4-dihydroxy-2-naphthoic acid phytyltransferase involved in phylloquinone and plastoquinone biosynthesis. Mutants are pale green and heterotrophic with defects in photosynthetic electron transport.  go_component chloroplast|GO:0009507|15686525|IDA  go_process photosynthetic electron transport in photosystem II|GO:0009772|15686525|IMP  go_process plastoquinone biosynthetic process|GO:0010236|15686525|IMP  go_process phylloquinone biosynthetic process|GO:0042372|15686525|IMP  go_function prenyltransferase activity|GO:0004659||ISS  go_function 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity|GO:0046428|15686525|ISS  product ABC4 (ABERRANT CHLOROPLAST DEVELOPMENT 4); 1,4-dihydroxy-2-naphthoate octaprenyltransferase/ prenyltransferase  note ABERRANT CHLOROPLAST DEVELOPMENT 4 (ABC4); FUNCTIONS IN: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity, prenyltransferase activity; INVOLVED IN: phylloquinone biosynthetic process, photosynthetic electron transport in photosystem II, plastoquinone biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UbiA prenyltransferase (InterPro:IPR000537), 1,4-dihydroxy-2-naphthoate phytyltransferase (InterPro:IPR011937); Has 1285 Blast hits to 1285 proteins in 391 species: Archae - 38; Bacteria - 752; Metazoa - 36; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 437 (source: NCBI BLink).  protein_id AT1G60600.1p  transcript_id AT1G60600.1  protein_id AT1G60600.1p  transcript_id AT1G60600.1  
At1g60600	chr1:022326670	0.0	C/22326670-22326759,22326366-22326590,22326181-22326284,22326016-22326087,22325789-22325927,22325606-22325712,22325420-22325519,22325307-22325345,22325111-22325221,22324967-22325032,22324807-22324902	AT1G60600.2  CDS  gene_syn 1,4-DIHYDROXY-2-NAPTHOIC ACID PHYTYLTRANSFERASE, ABC4, ABERRANT CHLOROPLAST DEVELOPMENT 4, F8A5.36, F8A5_36  gene ABC4  function Encodes a protein similar to 1,4-dihydroxy-2-naphthoic acid phytyltransferase involved in phylloquinone and plastoquinone biosynthesis. Mutants are pale green and heterotrophic with defects in photosynthetic electron transport.  go_component chloroplast|GO:0009507|15686525|IDA  go_process photosynthetic electron transport in photosystem II|GO:0009772|15686525|IMP  go_process plastoquinone biosynthetic process|GO:0010236|15686525|IMP  go_process phylloquinone biosynthetic process|GO:0042372|15686525|IMP  go_function prenyltransferase activity|GO:0004659||ISS  go_function 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity|GO:0046428|15686525|ISS  product ABC4 (ABERRANT CHLOROPLAST DEVELOPMENT 4); 1,4-dihydroxy-2-naphthoate octaprenyltransferase/ prenyltransferase  note ABERRANT CHLOROPLAST DEVELOPMENT 4 (ABC4); FUNCTIONS IN: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity, prenyltransferase activity; INVOLVED IN: phylloquinone biosynthetic process, photosynthetic electron transport in photosystem II, plastoquinone biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 1,4-dihydroxy-2-naphthoate phytyltransferase (InterPro:IPR011937), UbiA prenyltransferase (InterPro:IPR000537); Has 1354 Blast hits to 1354 proteins in 414 species: Archae - 38; Bacteria - 804; Metazoa - 41; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 446 (source: NCBI BLink).  protein_id AT1G60600.2p  transcript_id AT1G60600.2  protein_id AT1G60600.2p  transcript_id AT1G60600.2  
At1g60610	chr1:022329078	0.0	C/22329078-22329186,22328621-22328988,22327999-22328544	AT1G60610.1  CDS  gene_syn F8A5.13, F8A5_13  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G10650.1); Has 591 Blast hits to 585 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 268; Fungi - 3; Plants - 198; Viruses - 26; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT1G60610.1p  transcript_id AT1G60610.1  protein_id AT1G60610.1p  transcript_id AT1G60610.1  
At1g60610	chr1:022329078	0.0	C/22329078-22329186,22328621-22328988,22327999-22328544	AT1G60610.2  CDS  gene_syn F8A5.13, F8A5_13  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G10650.1); Has 591 Blast hits to 585 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 268; Fungi - 3; Plants - 198; Viruses - 26; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT1G60610.2p  transcript_id AT1G60610.2  protein_id AT1G60610.2p  transcript_id AT1G60610.2  
At1g60610	chr1:022329078	0.0	C/22329078-22329186,22328621-22328988,22327999-22328544	AT1G60610.3  CDS  gene_syn F8A5.13, F8A5_13  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G10650.1); Has 591 Blast hits to 585 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 268; Fungi - 3; Plants - 198; Viruses - 26; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT1G60610.3p  transcript_id AT1G60610.3  protein_id AT1G60610.3p  transcript_id AT1G60610.3  
At1g60620	chr1:022331225	0.0	W/22331225-22331383,22331689-22331874,22331953-22332082,22332178-22332258,22332352-22332539,22332634-22332729,22332832-22332925,22333053-22333172,22333267-22333370	AT1G60620.1  CDS  gene_syn ATRPAC43, RNA POLYMERASE I SUBUNIT 43  gene ATRPAC43  go_component nucleus|GO:0005634||IEA  go_process transcription|GO:0006350||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_process transcription|GO:0006350||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product ATRPAC43; DNA binding / DNA-directed RNA polymerase/ protein dimerization  note ATRPAC43; FUNCTIONS IN: DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, insert (InterPro:IPR011262), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RpoA/D/Rpb3-type (InterPro:IPR011263), DNA-directed RNA polymerase, 30-40 kDa subunit, conserved site (InterPro:IPR001514), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); BEST Arabidopsis thaliana protein match is: ATRPAC42; DNA binding / DNA-directed RNA polymerase/ protein dimerization (TAIR:AT1G60850.2); Has 1009 Blast hits to 1009 proteins in 248 species: Archae - 155; Bacteria - 0; Metazoa - 242; Fungi - 224; Plants - 67; Viruses - 0; Other Eukaryotes - 321 (source: NCBI BLink).  protein_id AT1G60620.1p  transcript_id AT1G60620.1  protein_id AT1G60620.1p  transcript_id AT1G60620.1  
At1g60625	chr1:022333916	0.0	W/22333916-22334161	AT1G60625.1  CDS  gene_syn RALF-LIKE 6, RALFL6  gene RALFL6  function Rapid alkalinization factor (RALF) family protein. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  go_component apoplast|GO:0048046|12611624|ISS  go_process cell-cell signaling|GO:0007267|12611624|ISS  go_function signal transducer activity|GO:0004871|12611624|TAS  product RALFL6 (RALF-LIKE 6); signal transducer  note RALF-LIKE 6 (RALFL6); FUNCTIONS IN: signal transducer activity; INVOLVED IN: cell-cell signaling; LOCATED IN: apoplast; BEST Arabidopsis thaliana protein match is: RALFL7 (RALF-LIKE 7); signal transducer (TAIR:AT1G60815.1); Has 8 Blast hits to 8 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G60625.1p  transcript_id AT1G60625.1  protein_id AT1G60625.1p  transcript_id AT1G60625.1  
At1g60630	chr1:022335477	0.0	C/22335477-22336785,22334754-22335403	AT1G60630.1  CDS  gene_syn F8A5.15, F8A5_15  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATP binding / protein binding / protein kinase/ protein serine/threonine kinase (TAIR:AT1G10850.1); Has 89765 Blast hits to 71222 proteins in 1920 species: Archae - 33; Bacteria - 5708; Metazoa - 29165; Fungi - 5291; Plants - 37168; Viruses - 243; Other Eukaryotes - 12157 (source: NCBI BLink).  protein_id AT1G60630.1p  transcript_id AT1G60630.1  protein_id AT1G60630.1p  transcript_id AT1G60630.1  
At1g60640	chr1:022339336	0.0	C/22339336-22339513,22339003-22339238,22338767-22338853,22338618-22338683,22338467-22338526,22338319-22338384,22338174-22338233,22338009-22338074,22337858-22337917,22337701-22337766,22337534-22337611	AT1G60640.1  CDS  gene_syn F8A5.16, F8A5_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G22795.1); Has 39659 Blast hits to 19740 proteins in 927 species: Archae - 23; Bacteria - 5275; Metazoa - 16770; Fungi - 3207; Plants - 1181; Viruses - 285; Other Eukaryotes - 12918 (source: NCBI BLink).  protein_id AT1G60640.1p  transcript_id AT1G60640.1  protein_id AT1G60640.1p  transcript_id AT1G60640.1  
At1g60640	chr1:022339336	0.0	C/22339336-22339513,22339003-22339238,22338767-22338853,22338618-22338683,22338467-22338526,22338319-22338384,22338174-22338233,22338009-22338074,22337858-22337917,22337701-22337766,22337534-22337611	AT1G60640.2  CDS  gene_syn F8A5.16, F8A5_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G22795.1); Has 39659 Blast hits to 19740 proteins in 927 species: Archae - 23; Bacteria - 5275; Metazoa - 16770; Fungi - 3207; Plants - 1181; Viruses - 285; Other Eukaryotes - 12918 (source: NCBI BLink).  protein_id AT1G60640.2p  transcript_id AT1G60640.2  protein_id AT1G60640.2p  transcript_id AT1G60640.2  
At1g60650	chr1:022340089	0.0	W/22340089-22340214,22341306-22341814,22341905-22342148	AT1G60650.1  CDS  gene_syn F8A5.17, F8A5_17  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product glycine-rich RNA-binding protein, putative  note glycine-rich RNA-binding protein, putative; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: glycine-rich RNA-binding protein (TAIR:AT5G04280.1); Has 22380 Blast hits to 17124 proteins in 636 species: Archae - 10; Bacteria - 1113; Metazoa - 13214; Fungi - 2426; Plants - 3261; Viruses - 1; Other Eukaryotes - 2355 (source: NCBI BLink).  protein_id AT1G60650.1p  transcript_id AT1G60650.1  protein_id AT1G60650.1p  transcript_id AT1G60650.1  
At1g60650	chr1:022340089	0.0	W/22340089-22340214,22341306-22341814,22341905-22342148	AT1G60650.2  CDS  gene_syn F8A5.17, F8A5_17  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product glycine-rich RNA-binding protein, putative  note glycine-rich RNA-binding protein, putative; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: glycine-rich RNA-binding protein (TAIR:AT5G04280.1); Has 22380 Blast hits to 17124 proteins in 636 species: Archae - 10; Bacteria - 1113; Metazoa - 13214; Fungi - 2426; Plants - 3261; Viruses - 1; Other Eukaryotes - 2355 (source: NCBI BLink).  protein_id AT1G60650.2p  transcript_id AT1G60650.2  protein_id AT1G60650.2p  transcript_id AT1G60650.2  
At1g60660	chr1:022342589	0.0	C/22342589-22342954	AT1G60660.1  CDS  gene_syn ARABIDOPSIS CYTOCHROME B5-LIKE PROTEIN, ATCB5LP, B5  5, CB5LP, CYTOCHROME B5-LIKE PROTEIN, F8A5.18, F8A5_18  gene CB5LP  function member of Cytochromes b5  go_function heme binding|GO:0020037||IEA  product CB5LP (CYTOCHROME B5-LIKE PROTEIN); heme binding  note CYTOCHROME B5-LIKE PROTEIN (CB5LP); FUNCTIONS IN: heme binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b5, heme-binding site (InterPro:IPR018506), Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: CB5-A (CYTOCHROME B5 ISOFORM A); heme binding (TAIR:AT1G26340.1); Has 2714 Blast hits to 2691 proteins in 367 species: Archae - 1; Bacteria - 19; Metazoa - 855; Fungi - 876; Plants - 537; Viruses - 0; Other Eukaryotes - 426 (source: NCBI BLink).  protein_id AT1G60660.1p  transcript_id AT1G60660.1  protein_id AT1G60660.1p  transcript_id AT1G60660.1  
At1g60670	chr1:022344099	0.0	W/22344099-22344301,22344635-22344734,22345599-22345655,22345818-22345923,22346257-22346339,22346540-22346601,22346717-22346813,22347084-22347140	AT1G60670.2  CDS  gene_syn F8A5.19, F8A5_19  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10820.2); Has 99 Blast hits to 99 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G60670.2p  transcript_id AT1G60670.2  protein_id AT1G60670.2p  transcript_id AT1G60670.2  
At1g60670	chr1:022344099	0.0	W/22344099-22344301,22344635-22344734,22345599-22345655,22345818-22345923,22346257-22346339,22346717-22346773	AT1G60670.1  CDS  gene_syn F8A5.19, F8A5_19  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10820.2); Has 83 Blast hits to 83 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G60670.1p  transcript_id AT1G60670.1  protein_id AT1G60670.1p  transcript_id AT1G60670.1  
At1g60680	chr1:022349015	0.0	C/22349015-22349236,22348674-22348877,22348412-22348584,22348232-22348334,22347824-22348162	AT1G60680.1  CDS  gene_syn AGD2, ARF-GAP DOMAIN 2, F8A5.20, F8A5_20  go_process oxidation reduction|GO:0055114||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function aldo-keto reductase activity|GO:0004033||ISS  product aldo/keto reductase family protein  note aldo/keto reductase family protein; FUNCTIONS IN: oxidoreductase activity, aldo-keto reductase activity; INVOLVED IN: oxidation reduction; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395); BEST Arabidopsis thaliana protein match is: aldo/keto reductase family protein (TAIR:AT1G60690.1); Has 18880 Blast hits to 18863 proteins in 1466 species: Archae - 337; Bacteria - 10253; Metazoa - 1652; Fungi - 1496; Plants - 777; Viruses - 0; Other Eukaryotes - 4365 (source: NCBI BLink).  protein_id AT1G60680.1p  transcript_id AT1G60680.1  protein_id AT1G60680.1p  transcript_id AT1G60680.1  
At1g60690	chr1:022351447	0.0	C/22351447-22351668,22351085-22351285,22350507-22350679,22350330-22350432,22349892-22350230	AT1G60690.1  CDS  gene_syn F8A5.21, F8A5_21  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process oxidation reduction|GO:0055114||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function aldo-keto reductase activity|GO:0004033||ISS  product aldo/keto reductase family protein  note aldo/keto reductase family protein; FUNCTIONS IN: oxidoreductase activity, aldo-keto reductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: plasma membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395); BEST Arabidopsis thaliana protein match is: ATB2; oxidoreductase (TAIR:AT1G60710.1); Has 18262 Blast hits to 18242 proteins in 1448 species: Archae - 333; Bacteria - 10168; Metazoa - 1431; Fungi - 1444; Plants - 723; Viruses - 0; Other Eukaryotes - 4163 (source: NCBI BLink).  protein_id AT1G60690.1p  transcript_id AT1G60690.1  protein_id AT1G60690.1p  transcript_id AT1G60690.1  
At1g60700	chr1:022354319	0.0	C/22354319-22354372,22353047-22354039,22352908-22352962,22352636-22352781,22352454-22352540,22352228-22352356,22352036-22352149	AT1G60700.1  CDS  gene_syn F8A5.22, F8A5_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product forkhead-associated domain-containing protein / FHA domain-containing protein  note forkhead-associated domain-containing protein / FHA domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: emb1967 (embryo defective 1967) (TAIR:AT3G54350.3); Has 198 Blast hits to 198 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 138; Fungi - 2; Plants - 27; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT1G60700.1p  transcript_id AT1G60700.1  protein_id AT1G60700.1p  transcript_id AT1G60700.1  
At1g60710	chr1:022356406	0.0	C/22356406-22356627,22356022-22356222,22355689-22355861,22355506-22355608,22355073-22355411	AT1G60710.1  CDS  gene_syn ATB2, F8A5.23, F8A5_23  gene ATB2  function Encodes ATB2.  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function oxidoreductase activity|GO:0016491||IEA  product ATB2; oxidoreductase  note ATB2; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395); BEST Arabidopsis thaliana protein match is: aldo/keto reductase family protein (TAIR:AT1G60730.1); Has 18528 Blast hits to 18510 proteins in 1459 species: Archae - 328; Bacteria - 10220; Metazoa - 1615; Fungi - 1455; Plants - 734; Viruses - 0; Other Eukaryotes - 4176 (source: NCBI BLink).  protein_id AT1G60710.1p  transcript_id AT1G60710.1  protein_id AT1G60710.1p  transcript_id AT1G60710.1  
At1g60720	chr1:022357072	0.0	W/22357072-22357941	AT1G60720.1  CDS  gene_syn F8A5.34, F8A5_34  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G33710.1); Has 408 Blast hits to 400 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 408; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G60720.1p  transcript_id AT1G60720.1  protein_id AT1G60720.1p  transcript_id AT1G60720.1  
At1g60730	chr1:022359861	0.0	C/22359861-22360082,22359475-22359675,22358938-22359110,22358754-22358860,22358613-22358665	AT1G60730.2  CDS  gene_syn F8A5.24, F8A5_24  go_process oxidation reduction|GO:0055114||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function aldo-keto reductase activity|GO:0004033||ISS  product aldo/keto reductase family protein  note aldo/keto reductase family protein; FUNCTIONS IN: oxidoreductase activity, aldo-keto reductase activity; INVOLVED IN: oxidation reduction; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395); BEST Arabidopsis thaliana protein match is: ATB2; oxidoreductase (TAIR:AT1G60710.1); Has 14112 Blast hits to 14103 proteins in 1310 species: Archae - 317; Bacteria - 8364; Metazoa - 993; Fungi - 1029; Plants - 381; Viruses - 0; Other Eukaryotes - 3028 (source: NCBI BLink).  protein_id AT1G60730.2p  transcript_id AT1G60730.2  protein_id AT1G60730.2p  transcript_id AT1G60730.2  
At1g60730	chr1:022359861	0.0	C/22359861-22360082,22359475-22359675,22358938-22359110,22358758-22358860,22358327-22358665	AT1G60730.1  CDS  gene_syn F8A5.24, F8A5_24  go_process oxidation reduction|GO:0055114||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function aldo-keto reductase activity|GO:0004033||ISS  product aldo/keto reductase family protein  note aldo/keto reductase family protein; FUNCTIONS IN: oxidoreductase activity, aldo-keto reductase activity; INVOLVED IN: oxidation reduction; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395); BEST Arabidopsis thaliana protein match is: ATB2; oxidoreductase (TAIR:AT1G60710.1); Has 17038 Blast hits to 17022 proteins in 1434 species: Archae - 331; Bacteria - 9666; Metazoa - 1243; Fungi - 1333; Plants - 699; Viruses - 0; Other Eukaryotes - 3766 (source: NCBI BLink).  protein_id AT1G60730.1p  transcript_id AT1G60730.1  protein_id AT1G60730.1p  transcript_id AT1G60730.1  
At1g60740	chr1:022361127	0.0	W/22361127-22361281,22361386-22361465,22361564-22361817	AT1G60740.1  CDS  gene_syn F8A5.25, F8A5_25  go_component plasma membrane|GO:0005886|17644812|IDA  go_process cell redox homeostasis|GO:0045454||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function antioxidant activity|GO:0016209||ISS  product peroxiredoxin type 2, putative  note peroxiredoxin type 2, putative; FUNCTIONS IN: oxidoreductase activity, antioxidant activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, cultured cell, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Redoxin (InterPro:IPR013740), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: TPX2 (thioredoxin-dependent peroxidase 2); antioxidant/ oxidoreductase (TAIR:AT1G65970.1); Has 3199 Blast hits to 3198 proteins in 586 species: Archae - 7; Bacteria - 936; Metazoa - 160; Fungi - 204; Plants - 170; Viruses - 0; Other Eukaryotes - 1722 (source: NCBI BLink).  protein_id AT1G60740.1p  transcript_id AT1G60740.1  protein_id AT1G60740.1p  transcript_id AT1G60740.1  
At1g60750	chr1:022363630	0.0	C/22363630-22363854,22363289-22363492,22362933-22363105,22362800-22362851,22362293-22362631	AT1G60750.1  CDS  gene_syn F8A5.26, F8A5_26  go_process oxidation reduction|GO:0055114||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product oxidoreductase  note oxidoreductase; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: oxidation reduction; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395); BEST Arabidopsis thaliana protein match is: aldo/keto reductase family protein (TAIR:AT1G60730.1).  protein_id AT1G60750.1p  transcript_id AT1G60750.1  protein_id AT1G60750.1p  transcript_id AT1G60750.1  
At1g60760	chr1:022365832	0.0	W/22365832-22366323	AT1G60760.1  CDS  gene_syn F8A5.27, F8A5_27  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT1G10770.1); Has 19 Blast hits to 19 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G60760.1p  transcript_id AT1G60760.1  protein_id AT1G60760.1p  transcript_id AT1G60760.1  
At1g60770	chr1:022368421	0.0	C/22368421-22368648,22366959-22368206	AT1G60770.1  CDS  gene_syn F8A5.28, F8A5_28  go_function binding|GO:0005488||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G02370.1); Has 9197 Blast hits to 3516 proteins in 140 species: Archae - 2; Bacteria - 22; Metazoa - 95; Fungi - 82; Plants - 8677; Viruses - 0; Other Eukaryotes - 319 (source: NCBI BLink).  protein_id AT1G60770.1p  transcript_id AT1G60770.1  protein_id AT1G60770.1p  transcript_id AT1G60770.1  
At1g60780	chr1:022371757	0.0	C/22371757-22371885,22371246-22371392,22371084-22371146,22370764-22370940,22370577-22370680,22370366-22370473,22370130-22370226,22369947-22370044,22369693-22369834,22369469-22369591,22369289-22369387	AT1G60780.1  CDS  gene_syn F8A5.29, F8A5_29, HAP13, HAPLESS 13  gene HAP13  go_component clathrin adaptor complex|GO:0030131||IEA  go_process transport|GO:0006810||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function protein binding|GO:0005515||IEA  go_component clathrin vesicle coat|GO:0030125||ISS  go_process intracellular protein transport|GO:0006886||ISS  product HAP13 (HAPLESS 13); protein binding  note HAPLESS 13 (HAP13); FUNCTIONS IN: protein binding; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport; LOCATED IN: clathrin vesicle coat, clathrin adaptor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, conserved site (InterPro:IPR018240), Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968), Clathrin adaptor, mu subunit (InterPro:IPR001392), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: clathrin adaptor complexes medium subunit family protein (TAIR:AT1G10730.1); Has 1643 Blast hits to 1593 proteins in 209 species: Archae - 0; Bacteria - 0; Metazoa - 929; Fungi - 318; Plants - 104; Viruses - 0; Other Eukaryotes - 292 (source: NCBI BLink).  protein_id AT1G60780.1p  transcript_id AT1G60780.1  protein_id AT1G60780.1p  transcript_id AT1G60780.1  
At1g60783	chr1:022375173	0.0	W/22375173-22375493	AT1G60783.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10690.1); Has 25 Blast hits to 25 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G60783.1p  transcript_id AT1G60783.1  protein_id AT1G60783.1p  transcript_id AT1G60783.1  
At1g60790	chr1:022381480	0.0	C/22381480-22382216,22381154-22381346,22380855-22381048,22380616-22380774,22380193-22380535	AT1G60790.1  CDS  gene_syn F8A5.30, F8A5_30  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06700.1); Has 720 Blast hits to 708 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 711; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G60790.1p  transcript_id AT1G60790.1  protein_id AT1G60790.1p  transcript_id AT1G60790.1  
At1g60800	chr1:022386826	0.0	C/22386826-22386931,22386315-22386444,22386158-22386229,22385933-22386076,22385753-22385824,22385594-22385653,22385418-22385509,22385180-22385326,22384752-22385093,22384273-22384664,22383601-22383942	AT1G60800.1  CDS  gene_syn F8A5.31, F8A5_31, NIK3, NSP-INTERACTING KINASE 3  gene NIK3  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product NIK3 (NSP-INTERACTING KINASE 3); kinase  note NSP-INTERACTING KINASE 3 (NIK3); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: NIK2 (NSP-INTERACTING KINASE 2); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase (TAIR:AT3G25560.1); Has 119774 Blast hits to 86788 proteins in 3214 species: Archae - 64; Bacteria - 8965; Metazoa - 39111; Fungi - 5992; Plants - 49549; Viruses - 384; Other Eukaryotes - 15709 (source: NCBI BLink).  protein_id AT1G60800.1p  transcript_id AT1G60800.1  protein_id AT1G60800.1p  transcript_id AT1G60800.1  
At1g60810	chr1:022390895	0.0	C/22390895-22390993,22390582-22390758,22390338-22390499,22390157-22390237,22390028-22390079,22389824-22389938,22389633-22389714,22389454-22389549,22389264-22389365,22389052-22389168,22388847-22388963,22388691-22388762	AT1G60810.1  CDS  gene_syn ACLA-2, F8A5.32, F8A5_32  gene ACLA-2  function One of the three genes encoding subunit A of the trimeric enzyme ATP Citrate lyase  go_component citrate lyase complex|GO:0009346|12376641|ISS  go_process acetyl-CoA biosynthetic process|GO:0006085|12376641|TAS  go_function ATP citrate synthase activity|GO:0003878|12376641|ISS  product ACLA-2; ATP citrate synthase  note ACLA-2; FUNCTIONS IN: ATP citrate synthase activity; INVOLVED IN: acetyl-CoA biosynthetic process; LOCATED IN: citrate lyase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATP-grasp fold, subdomain 2 (InterPro:IPR013816), ATP-grasp fold, succinyl-CoA synthetase-type (InterPro:IPR013650), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: ACLA-1; ATP citrate synthase (TAIR:AT1G10670.2); Has 4221 Blast hits to 4220 proteins in 1005 species: Archae - 79; Bacteria - 1953; Metazoa - 324; Fungi - 128; Plants - 54; Viruses - 0; Other Eukaryotes - 1683 (source: NCBI BLink).  protein_id AT1G60810.1p  transcript_id AT1G60810.1  protein_id AT1G60810.1p  transcript_id AT1G60810.1  
At1g60815	chr1:022392729	0.0	W/22392729-22392974	AT1G60815.1  CDS  gene_syn RALF-LIKE 7, RALFL7  gene RALFL7  function Rapid alkalinization factor (RALF) family protein. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  go_component apoplast|GO:0048046|12611624|ISS  go_process cell-cell signaling|GO:0007267|12611624|ISS  go_function signal transducer activity|GO:0004871|12611624|TAS  product RALFL7 (RALF-LIKE 7); signal transducer  note RALF-LIKE 7 (RALFL7); FUNCTIONS IN: signal transducer activity; INVOLVED IN: cell-cell signaling; LOCATED IN: apoplast; CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALFL6 (RALF-LIKE 6); signal transducer (TAIR:AT1G60625.1); Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G60815.1p  transcript_id AT1G60815.1  protein_id AT1G60815.1p  transcript_id AT1G60815.1  
At1g60820	chr1:022394637	0.0	C/22394637-22394707	AT1G60820.1  tRNA  gene_syn 50820.TRNA-GLY-2, 60046.TRNA-GLY-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: GCC)  transcript_id AT1G60820.1  
At1g60830	chr1:022395474	0.0	C/22395474-22395603,22395275-22395342,22395058-22395195	AT1G60830.1  CDS  gene_syn F8A5.35  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||ISS  product U2 snRNP auxiliary factor large subunit, putative  note U2 snRNP auxiliary factor large subunit, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: U2 snRNP auxiliary factor large subunit, putative (TAIR:AT1G60900.1); Has 770 Blast hits to 763 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 437; Fungi - 111; Plants - 91; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).  protein_id AT1G60830.1p  transcript_id AT1G60830.1  protein_id AT1G60830.1p  transcript_id AT1G60830.1  
At1g60835	chr1:022396666	0.0	W/22396666-22396913	AT1G60835.1  pseudogenic_transcript  pseudo  function Encodes a Rapid ALkalinization Factor (RALF) family protein [pseudogene]  
At1g60840	chr1:022397592	0.0	C/22397592-22397662	AT1G60840.1  tRNA  gene_syn 60046.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: GCC)  transcript_id AT1G60840.1  
At1g60850	chr1:022400021	0.0	C/22400021-22400155,22399531-22399719,22399319-22399448,22399151-22399231,22398872-22399059,22398588-22398773	AT1G60850.3  CDS  gene_syn AAC42, ATRPAC42, F23C21.3, F23C21_3, RNA POLYMERASE I SUBUNIT 42  gene ATRPAC42  go_component nucleolus|GO:0005730|15496452|IDA  go_process transcription|GO:0006350||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_process transcription|GO:0006350||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product ATRPAC42; DNA binding / DNA-directed RNA polymerase/ protein dimerization  note ATRPAC42; FUNCTIONS IN: DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleolus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, insert (InterPro:IPR011262), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RpoA/D/Rpb3-type (InterPro:IPR011263), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); BEST Arabidopsis thaliana protein match is: ATRPAC43; DNA binding / DNA-directed RNA polymerase/ protein dimerization (TAIR:AT1G60620.1); Has 966 Blast hits to 964 proteins in 245 species: Archae - 151; Bacteria - 0; Metazoa - 241; Fungi - 224; Plants - 67; Viruses - 0; Other Eukaryotes - 283 (source: NCBI BLink).  protein_id AT1G60850.3p  transcript_id AT1G60850.3  protein_id AT1G60850.3p  transcript_id AT1G60850.3  
At1g60850	chr1:022400021	0.0	C/22400021-22400155,22399531-22399719,22399319-22399448,22399151-22399231,22398872-22399059,22398678-22398773,22398471-22398564,22398269-22398385,22398078-22398175	AT1G60850.1  CDS  gene_syn AAC42, ATRPAC42, F23C21.3, F23C21_3, RNA POLYMERASE I SUBUNIT 42  gene ATRPAC42  go_component nucleolus|GO:0005730|15496452|IDA  go_process transcription|GO:0006350||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_process transcription|GO:0006350||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product ATRPAC42; DNA binding / DNA-directed RNA polymerase/ protein dimerization  note ATRPAC42; FUNCTIONS IN: DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleolus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, insert (InterPro:IPR011262), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RpoA/D/Rpb3-type (InterPro:IPR011263), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); BEST Arabidopsis thaliana protein match is: ATRPAC43; DNA binding / DNA-directed RNA polymerase/ protein dimerization (TAIR:AT1G60620.1); Has 996 Blast hits to 994 proteins in 247 species: Archae - 153; Bacteria - 0; Metazoa - 244; Fungi - 224; Plants - 67; Viruses - 0; Other Eukaryotes - 308 (source: NCBI BLink).  protein_id AT1G60850.1p  transcript_id AT1G60850.1  protein_id AT1G60850.1p  transcript_id AT1G60850.1  
At1g60850	chr1:022400021	0.0	C/22400021-22400155,22399531-22399719,22399319-22399448,22399151-22399231,22398872-22399059,22398678-22398773,22398471-22398564,22398269-22398385,22398078-22398175	AT1G60850.2  CDS  gene_syn AAC42, ATRPAC42, F23C21.3, F23C21_3, RNA POLYMERASE I SUBUNIT 42  gene ATRPAC42  go_component nucleolus|GO:0005730|15496452|IDA  go_process transcription|GO:0006350||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_process transcription|GO:0006350||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product ATRPAC42; DNA binding / DNA-directed RNA polymerase/ protein dimerization  note ATRPAC42; FUNCTIONS IN: DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleolus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, insert (InterPro:IPR011262), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RpoA/D/Rpb3-type (InterPro:IPR011263), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); BEST Arabidopsis thaliana protein match is: ATRPAC43; DNA binding / DNA-directed RNA polymerase/ protein dimerization (TAIR:AT1G60620.1); Has 996 Blast hits to 994 proteins in 247 species: Archae - 153; Bacteria - 0; Metazoa - 244; Fungi - 224; Plants - 67; Viruses - 0; Other Eukaryotes - 308 (source: NCBI BLink).  protein_id AT1G60850.2p  transcript_id AT1G60850.2  protein_id AT1G60850.2p  transcript_id AT1G60850.2  
At1g60860	chr1:022407592	0.0	C/22407592-22407639,22407428-22407504,22407018-22407118,22406383-22406453,22406105-22406167,22405714-22405758,22405290-22405355,22405103-22405150,22404916-22405011,22404766-22404807,22404208-22404420,22403637-22403762,22403167-22403376,22402997-22403083,22402652-22402912,22402305-22402429,22402020-22402110,22401436-22401881,22401244-22401358	AT1G60860.1  CDS  gene_syn AGD2, ARF-GAP DOMAIN 2, F23C21.2, F23C21_2  gene AGD2  function A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.  go_component cytoplasm|GO:0005737||IEA  go_process regulation of ARF GTPase activity|GO:0032312||IEA  go_function protein binding|GO:0005515||IEA  go_function ARF GTPase activator activity|GO:0008060||IEA  go_function zinc ion binding|GO:0008270||IEA  product AGD2 (ARF-GAP DOMAIN 2); ARF GTPase activator/ protein binding / zinc ion binding  note ARF-GAP DOMAIN 2 (AGD2); FUNCTIONS IN: protein binding, ARF GTPase activator activity, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164), Pleckstrin homology-type (InterPro:IPR011993), BAR (InterPro:IPR004148), Pleckstrin homology (InterPro:IPR001849), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: AGD4 (ARF-GAP domain 4); ARF GTPase activator/ protein binding / zinc ion binding (TAIR:AT1G10870.1); Has 18579 Blast hits to 12078 proteins in 440 species: Archae - 43; Bacteria - 1084; Metazoa - 9910; Fungi - 1543; Plants - 665; Viruses - 192; Other Eukaryotes - 5142 (source: NCBI BLink).  protein_id AT1G60860.1p  transcript_id AT1G60860.1  protein_id AT1G60860.1p  transcript_id AT1G60860.1  
At1g60870	chr1:022409712	0.0	W/22409712-22409914,22409987-22410227	AT1G60870.1  CDS  gene_syn MEE9, T7P1.2, T7P1_2, maternal effect embryo arrest 9  gene MEE9  go_component plasma membrane|GO:0005886|17317660|IDA  go_process pollen development|GO:0009555|19237690|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function molecular_function|GO:0003674||ND  product MEE9 (maternal effect embryo arrest 9)  note maternal effect embryo arrest 9 (MEE9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy, pollen development; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 156 Blast hits to 80 proteins in 36 species: Archae - 0; Bacteria - 17; Metazoa - 12; Fungi - 19; Plants - 13; Viruses - 85; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G60870.1p  transcript_id AT1G60870.1  protein_id AT1G60870.1p  transcript_id AT1G60870.1  
At1g60880	chr1:022411575	0.0	W/22411575-22412180	AT1G60880.1  CDS  gene_syn AGL56, T7P1.3, T7P1_3  gene AGL56  function Root Specific  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL56; DNA binding / transcription factor  note AGL56; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: N-terminal protein myristoylation, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: agl55 (AGAMOUS-LIKE 55); DNA binding / transcription factor (TAIR:AT1G60920.1); Has 622 Blast hits to 622 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 619; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G60880.1p  transcript_id AT1G60880.1  protein_id AT1G60880.1p  transcript_id AT1G60880.1  
At1g60890	chr1:022416328	0.0	C/22416328-22416338,22415169-22416227,22414730-22414897,22414413-22414578,22414018-22414128,22413746-22413933,22413219-22413379,22412850-22413015,22412452-22412731	AT1G60890.1  CDS  gene_syn T7P1.4, T7P1_4  go_component plasma membrane|GO:0005886|17317660|IDA  go_process phosphatidylinositol metabolic process|GO:0046488||IEA  go_function ATP binding|GO:0005524||IEA  go_function phosphatidylinositol phosphate kinase activity|GO:0016307||IEA  go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308||IEA  go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308||ISS  product phosphatidylinositol-4-phosphate 5-kinase family protein  note phosphatidylinositol-4-phosphate 5-kinase family protein; FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding; INVOLVED IN: phosphatidylinositol metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, plant (InterPro:IPR017163), MORN motif (InterPro:IPR003409), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: phosphatidylinositol-4-phosphate 5-kinase family protein (TAIR:AT1G10900.1); Has 22998 Blast hits to 6300 proteins in 384 species: Archae - 0; Bacteria - 2356; Metazoa - 3944; Fungi - 305; Plants - 691; Viruses - 0; Other Eukaryotes - 15702 (source: NCBI BLink).  protein_id AT1G60890.1p  transcript_id AT1G60890.1  protein_id AT1G60890.1p  transcript_id AT1G60890.1  
At1g60900	chr1:022424008	0.0	W/22424008-22424118,22424393-22424685,22424769-22424918,22425229-22425296,22425927-22426003,22426099-22426146,22426225-22426284,22426399-22426459,22426545-22426657,22426764-22427210,22427279-22427414,22427522-22427589,22427669-22427806	AT1G60900.1  CDS  gene_syn T7P1.5, T7P1_5  go_component nucleus|GO:0005634||IEA  go_process mRNA processing|GO:0006397||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function RNA binding|GO:0003723||ISS  product U2 snRNP auxiliary factor large subunit, putative  note U2 snRNP auxiliary factor large subunit, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), U2 snRNP auxilliary factor, large subunit, splicing factor (InterPro:IPR006529); BEST Arabidopsis thaliana protein match is: ATU2AF65A; RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT4G36690.1); Has 85440 Blast hits to 35122 proteins in 1401 species: Archae - 56; Bacteria - 10121; Metazoa - 44645; Fungi - 7960; Plants - 5595; Viruses - 646; Other Eukaryotes - 16417 (source: NCBI BLink).  protein_id AT1G60900.1p  transcript_id AT1G60900.1  protein_id AT1G60900.1p  transcript_id AT1G60900.1  
At1g60910	chr1:022428167	0.0	W/22428167-22428237	AT1G60910.1  tRNA  gene_syn 60086.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: GCC)  transcript_id AT1G60910.1  
At1g60913	chr1:022428605	0.0	C/22428605-22428844	AT1G60913.1  CDS  function Encodes a Rapid ALkalinization Factor (RALF) family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: RALFL7 (RALF-LIKE 7); signal transducer (TAIR:AT1G60815.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G60913.1p  transcript_id AT1G60913.1  protein_id AT1G60913.1p  transcript_id AT1G60913.1  
At1g60920	chr1:022429692	0.0	C/22429692-22430267	AT1G60920.1  CDS  gene_syn AGAMOUS-LIKE 55, T7P1.6, T7P1_6, agl55  gene agl55  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product agl55 (AGAMOUS-LIKE 55); DNA binding / transcription factor  note AGAMOUS-LIKE 55 (agl55); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: N-terminal protein myristoylation, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL56; DNA binding / transcription factor (TAIR:AT1G60880.1); Has 676 Blast hits to 676 proteins in 154 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 121; Plants - 537; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G60920.1p  transcript_id AT1G60920.1  protein_id AT1G60920.1p  transcript_id AT1G60920.1  
At1g60930	chr1:022438226	0.0	C/22438226-22438302,22437962-22438135,22437452-22437512,22436803-22437210,22436397-22436552,22436180-22436310,22435540-22435906,22435372-22435461,22435011-22435097,22434775-22434902,22434256-22434376,22434000-22434151,22433798-22433933,22433584-22433707,22433442-22433512,22433280-22433348,22433065-22433187,22432821-22432979,22432655-22432735,22432344-22432505,22432091-22432146,22431740-22431851,22431544-22431638,22431385-22431462,22431093-22431285	AT1G60930.1  CDS  gene_syn ARABIDOPSIS RECQ HELICASE L4B, ATRECQ4B, RECQ HELICASE L4B, RECQL4B, T7P1.7, T7P1_7  gene ATRECQ4B  function AtRECQ4B mutant showed no sensitivity to DNA damaging agents.Involved in homologous recombination.  go_component intracellular|GO:0005622||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function catalytic activity|GO:0003824||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_process DNA recombination|GO:0006310|18000056|IMP  go_function DNA helicase activity|GO:0003678||ISS  product ATRECQ4B (ARABIDOPSIS RECQ HELICASE L4B); ATP binding / ATP-dependent helicase/ DNA helicase/ catalytic/ helicase/ nucleic acid binding / nucleotide binding  note ARABIDOPSIS RECQ HELICASE L4B (ATRECQ4B); FUNCTIONS IN: in 7 functions; INVOLVED IN: DNA recombination; LOCATED IN: intracellular; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), HRDC-like (InterPro:IPR010997), DNA helicase, ATP-dependent, RecQ type, N-terminal region (InterPro:IPR018329), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), Helicase and RNase D C-terminal, HRDC (InterPro:IPR002121); BEST Arabidopsis thaliana protein match is: RECQ4A; ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding (TAIR:AT1G10930.1); Has 17525 Blast hits to 17478 proteins in 1530 species: Archae - 217; Bacteria - 9029; Metazoa - 2349; Fungi - 1415; Plants - 761; Viruses - 5; Other Eukaryotes - 3749 (source: NCBI BLink).  protein_id AT1G60930.1p  transcript_id AT1G60930.1  protein_id AT1G60930.1p  transcript_id AT1G60930.1  
At1g60940	chr1:022441777	0.0	C/22441777-22441896,22441515-22441589,22441310-22441411,22441029-22441082,22440835-22440927,22440597-22440689,22439998-22440102,22439820-22439918,22439398-22439742	AT1G60940.1  CDS  gene_syn SNF1-RELATED KINASE 2B, SNF1-RELATED PROTEIN KINASE 2.10, SNRK2-10, SNRK2.10, SRK2B, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-10, T7P1.8, T7P1_8  gene SNRK2.10  function encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress.  go_process response to osmotic stress|GO:0006970|15292193|IDA  go_process response to salt stress|GO:0009651|15292193|IDA  go_function kinase activity|GO:0016301|15292193|IDA  go_function kinase activity|GO:0016301||ISS  product SNRK2.10 (SNF1-RELATED PROTEIN KINASE 2.10); kinase  note SNF1-RELATED PROTEIN KINASE 2.10 (SNRK2.10); FUNCTIONS IN: kinase activity; INVOLVED IN: response to salt stress, response to osmotic stress; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Plant protein serine/threonine kinase-like (InterPro:IPR015740), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: SNRK2.4 (SNF1-RELATED PROTEIN KINASE 2.4); kinase (TAIR:AT1G10940.1); Has 81722 Blast hits to 80340 proteins in 1909 species: Archae - 47; Bacteria - 7239; Metazoa - 34937; Fungi - 7994; Plants - 14944; Viruses - 455; Other Eukaryotes - 16106 (source: NCBI BLink).  protein_id AT1G60940.1p  transcript_id AT1G60940.1  protein_id AT1G60940.1p  transcript_id AT1G60940.1  
At1g60940	chr1:022441777	0.0	C/22441777-22441896,22441515-22441589,22441310-22441411,22441029-22441082,22440835-22440927,22440597-22440689,22439998-22440102,22439820-22439918,22439398-22439742	AT1G60940.2  CDS  gene_syn SNF1-RELATED KINASE 2B, SNF1-RELATED PROTEIN KINASE 2.10, SNRK2-10, SNRK2.10, SRK2B, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-10, T7P1.8, T7P1_8  gene SNRK2.10  function encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress.  go_process response to osmotic stress|GO:0006970|15292193|IDA  go_process response to salt stress|GO:0009651|15292193|IDA  go_function kinase activity|GO:0016301|15292193|IDA  go_function kinase activity|GO:0016301||ISS  product SNRK2.10 (SNF1-RELATED PROTEIN KINASE 2.10); kinase  note SNF1-RELATED PROTEIN KINASE 2.10 (SNRK2.10); FUNCTIONS IN: kinase activity; INVOLVED IN: response to salt stress, response to osmotic stress; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Plant protein serine/threonine kinase-like (InterPro:IPR015740), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: SNRK2.4 (SNF1-RELATED PROTEIN KINASE 2.4); kinase (TAIR:AT1G10940.1); Has 81722 Blast hits to 80340 proteins in 1909 species: Archae - 47; Bacteria - 7239; Metazoa - 34937; Fungi - 7994; Plants - 14944; Viruses - 455; Other Eukaryotes - 16106 (source: NCBI BLink).  protein_id AT1G60940.2p  transcript_id AT1G60940.2  protein_id AT1G60940.2p  transcript_id AT1G60940.2  
At1g60950	chr1:022444565	0.0	W/22444565-22445011	AT1G60950.1  CDS  gene_syn ATFD2, FED A, FERREDOXIN 2, FERRODOXIN A  gene FED A  function encodes a major leaf ferredoxin  go_component chloroplast|GO:0009507|18431481|IDA  go_function electron carrier activity|GO:0009055||IEA  go_function iron-sulfur cluster binding|GO:0051536||IEA  go_function 2 iron, 2 sulfur cluster binding|GO:0051537||IEA  go_component chloroplast stroma|GO:0009570|2102830|TAS  go_process response to light stimulus|GO:0009416|2102830|IEP  go_process photosynthetic electron transport chain|GO:0009767|18494733|IMP  go_process photosynthetic electron transport chain|GO:0009767|2102830|TAS  product FED A; 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding  note FED A; FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding; INVOLVED IN: photosynthetic electron transport chain, response to light stimulus; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), Ferredoxin (InterPro:IPR001041), Ferredoxin [2Fe-2S], plant (InterPro:IPR010241), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: ATFD1 (FERREDOXIN 1); 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding (TAIR:AT1G10960.1); Has 5336 Blast hits to 5334 proteins in 903 species: Archae - 63; Bacteria - 3633; Metazoa - 8; Fungi - 7; Plants - 446; Viruses - 2; Other Eukaryotes - 1177 (source: NCBI BLink).  protein_id AT1G60950.1p  transcript_id AT1G60950.1  protein_id AT1G60950.1p  transcript_id AT1G60950.1  
At1g60960	chr1:022447046	0.0	C/22447046-22447060,22446903-22446960,22445965-22446713,22445410-22445865	AT1G60960.1  CDS  gene_syn IRT3, T7P1.10, T7P1_10  gene IRT3  function member of Fe(II) transporter isolog family  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020||ISS  go_process cation transport|GO:0006812|11500563|ISS  go_process cation transport|GO:0006812||ISS  go_process response to nematode|GO:0009624|16478044|IEP  go_process metal ion transport|GO:0030001||ISS  go_function cation transmembrane transporter activity|GO:0008324|11500563|ISS  go_function cation transmembrane transporter activity|GO:0008324||ISS  go_function metal ion transmembrane transporter activity|GO:0046873||ISS  product IRT3; cation transmembrane transporter/ metal ion transmembrane transporter  note IRT3; FUNCTIONS IN: cation transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: cation transport, response to nematode, metal ion transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal and plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: ZIP4 (ZINC TRANSPORTER 4 PRECURSOR); cation transmembrane transporter/ copper ion transmembrane transporter (TAIR:AT1G10970.1); Has 3133 Blast hits to 2458 proteins in 383 species: Archae - 2; Bacteria - 576; Metazoa - 1299; Fungi - 445; Plants - 403; Viruses - 7; Other Eukaryotes - 401 (source: NCBI BLink).  protein_id AT1G60960.1p  transcript_id AT1G60960.1  protein_id AT1G60960.1p  transcript_id AT1G60960.1  
At1g60970	chr1:022449385	0.0	C/22449385-22449387,22448837-22448996,22448584-22448731,22448407-22448484,22448221-22448305,22448008-22448067	AT1G60970.1  CDS  gene_syn T7P1.11, T7P1_11  go_component membrane coat|GO:0030117||IEA  go_process transport|GO:0006810||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function protein binding|GO:0005515||IEA  go_component clathrin vesicle coat|GO:0030125||ISS  go_process intracellular protein transport|GO:0006886||ISS  product clathrin adaptor complex small chain family protein  note clathrin adaptor complex small chain family protein; FUNCTIONS IN: protein binding; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport; LOCATED IN: membrane coat, clathrin vesicle coat; EXPRESSED IN: sperm cell, leaf whorl, pedicel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, sigma subunit/coatomer, zeta subunit (InterPro:IPR000804), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: protein binding (TAIR:AT3G09800.1); Has 434 Blast hits to 434 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 168; Fungi - 87; Plants - 97; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT1G60970.1p  transcript_id AT1G60970.1  protein_id AT1G60970.1p  transcript_id AT1G60970.1  
At1g60980	chr1:022452573	0.0	W/22452573-22453123,22453239-22453560,22453883-22454140	AT1G60980.1  CDS  gene_syn ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 4, ATGA20OX4, T7P1.12, T7P1_12  gene ATGA20OX4  go_process gibberellin biosynthetic process|GO:0009686|18069939|TAS  go_function gibberellin 20-oxidase activity|GO:0045544|18069939|TAS  product ATGA20OX4 (ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 4); gibberellin 20-oxidase  note ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 4 (ATGA20OX4); FUNCTIONS IN: gibberellin 20-oxidase activity; INVOLVED IN: gibberellin biosynthetic process; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: YAP169; gibberellin 20-oxidase (TAIR:AT5G07200.1); Has 5945 Blast hits to 5925 proteins in 684 species: Archae - 0; Bacteria - 744; Metazoa - 124; Fungi - 664; Plants - 3067; Viruses - 0; Other Eukaryotes - 1346 (source: NCBI BLink).  protein_id AT1G60980.1p  transcript_id AT1G60980.1  protein_id AT1G60980.1p  transcript_id AT1G60980.1  
At1g60983	chr1:022455320	0.0	W/22455320-22455589	AT1G60983.1  CDS  gene_syn SCR-Like 8, SCRL8  gene SCRL8  function Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165||IEA  product SCRL8 (SCR-Like 8)  note SCR-Like 8 (SCRL8); INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility response (InterPro:IPR010682); BEST Arabidopsis thaliana protein match is: SCRL4 (SCR-Like 4) (TAIR:AT1G60986.1); Has 26 Blast hits to 26 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G60983.1p  transcript_id AT1G60983.1  protein_id AT1G60983.1p  transcript_id AT1G60983.1  
At1g60985	chr1:022456815	0.0	W/22456815-22456884,22456985-22457202	AT1G60985.1  CDS  gene_syn SCR-Like 6, SCRL6  gene SCRL6  function Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165||IEA  go_function molecular_function|GO:0003674||ND  product SCRL6 (SCR-Like 6)  note SCR-Like 6 (SCRL6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: embryo; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility response (InterPro:IPR010682); BEST Arabidopsis thaliana protein match is: SCRL4 (SCR-Like 4) (TAIR:AT1G60986.1); Has 24 Blast hits to 24 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G60985.1p  transcript_id AT1G60985.1  protein_id AT1G60985.1p  transcript_id AT1G60985.1  
At1g60986	chr1:022459072	0.0	W/22459072-22459141,22459245-22459468	AT1G60986.1  CDS  gene_syn SCR-Like 4, SCRL4  gene SCRL4  function Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165||IEA  product SCRL4 (SCR-Like 4)  note SCR-Like 4 (SCRL4); INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility response (InterPro:IPR010682); BEST Arabidopsis thaliana protein match is: SCRL5 (SCR-Like 5) (TAIR:AT1G60987.1); Has 32 Blast hits to 32 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G60986.1p  transcript_id AT1G60986.1  protein_id AT1G60986.1p  transcript_id AT1G60986.1  
At1g60987	chr1:022460439	0.0	W/22460439-22460508,22460609-22460832	AT1G60987.1  CDS  gene_syn SCR-Like 5, SCRL5  gene SCRL5  function Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SCRL5 (SCR-Like 5)  note SCR-Like 5 (SCRL5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: SCRL4 (SCR-Like 4) (TAIR:AT1G60986.1); Has 24 Blast hits to 24 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G60987.1p  transcript_id AT1G60987.1  protein_id AT1G60987.1p  transcript_id AT1G60987.1  
At1g60989	chr1:022462230	0.0	W/22462230-22462299,22462385-22462593	AT1G60989.1  CDS  gene_syn SCR-Like 7, SCRL7  gene SCRL7  function Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165||IEA  product SCRL7 (SCR-Like 7)  note SCR-Like 7 (SCRL7); INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility response (InterPro:IPR010682); BEST Arabidopsis thaliana protein match is: SCRL4 (SCR-Like 4) (TAIR:AT1G60986.1); Has 26 Blast hits to 26 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G60989.1p  transcript_id AT1G60989.1  protein_id AT1G60989.1p  transcript_id AT1G60989.1  
At1g60990	chr1:022465177	0.0	C/22465177-22465416,22464916-22465017,22464811-22464844,22464611-22464684,22464454-22464519,22464288-22464352,22464087-22464174,22463909-22463974,22463669-22463834,22463270-22463353,22463064-22463191,22462771-22462956	AT1G60990.1  CDS  gene_syn T7P1.13, T7P1_13  go_component chloroplast|GO:0009507|18431481|IDA  go_process glycine catabolic process|GO:0006546||IEA  go_process glycine decarboxylation via glycine cleavage system|GO:0019464||IEA  go_function aminomethyltransferase activity|GO:0004047||IEA  go_function aminomethyltransferase activity|GO:0004047||ISS  product aminomethyltransferase  note aminomethyltransferase; FUNCTIONS IN: aminomethyltransferase activity; INVOLVED IN: glycine catabolic process, glycine decarboxylation via glycine cleavage system; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Folate-binding, YgfZ (InterPro:IPR017703), Glycine cleavage T-protein, N-terminal (InterPro:IPR006222), Glycine cleavage T-protein, C-terminal barrel (InterPro:IPR013977); BEST Arabidopsis thaliana protein match is: aminomethyltransferase, putative (TAIR:AT1G11860.2); Has 6316 Blast hits to 6316 proteins in 911 species: Archae - 63; Bacteria - 2535; Metazoa - 139; Fungi - 62; Plants - 58; Viruses - 0; Other Eukaryotes - 3459 (source: NCBI BLink).  protein_id AT1G60990.1p  transcript_id AT1G60990.1  protein_id AT1G60990.1p  transcript_id AT1G60990.1  
At1g60990	chr1:022465177	0.0	C/22465177-22465416,22464916-22465017,22464811-22464844,22464611-22464684,22464454-22464519,22464288-22464352,22464087-22464174,22463909-22463974,22463669-22463834,22463270-22463353,22463064-22463191,22462771-22462956	AT1G60990.2  CDS  gene_syn T7P1.13, T7P1_13  go_component chloroplast|GO:0009507|18431481|IDA  go_process glycine catabolic process|GO:0006546||IEA  go_function aminomethyltransferase activity|GO:0004047||IEA  go_function aminomethyltransferase activity|GO:0004047||ISS  product aminomethyltransferase  note aminomethyltransferase; FUNCTIONS IN: aminomethyltransferase activity; INVOLVED IN: glycine catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Folate-binding, YgfZ (InterPro:IPR017703), Glycine cleavage T-protein, N-terminal (InterPro:IPR006222), Glycine cleavage T-protein, C-terminal barrel (InterPro:IPR013977); BEST Arabidopsis thaliana protein match is: aminomethyltransferase, putative (TAIR:AT1G11860.2); Has 6316 Blast hits to 6316 proteins in 911 species: Archae - 63; Bacteria - 2535; Metazoa - 139; Fungi - 62; Plants - 58; Viruses - 0; Other Eukaryotes - 3459 (source: NCBI BLink).  protein_id AT1G60990.2p  transcript_id AT1G60990.2  protein_id AT1G60990.2p  transcript_id AT1G60990.2  
At1g60990	chr1:022465177	0.0	C/22465177-22465416,22464916-22465017,22464811-22464844,22464611-22464684,22464454-22464519,22464288-22464352,22464087-22464174,22463909-22463974,22463669-22463834,22463270-22463353,22463064-22463191,22462771-22462956	AT1G60990.3  CDS  gene_syn T7P1.13, T7P1_13  go_component chloroplast|GO:0009507|18431481|IDA  go_process glycine catabolic process|GO:0006546||IEA  go_function aminomethyltransferase activity|GO:0004047||IEA  go_function aminomethyltransferase activity|GO:0004047||ISS  product aminomethyltransferase  note aminomethyltransferase; FUNCTIONS IN: aminomethyltransferase activity; INVOLVED IN: glycine catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Folate-binding, YgfZ (InterPro:IPR017703), Glycine cleavage T-protein, N-terminal (InterPro:IPR006222), Glycine cleavage T-protein, C-terminal barrel (InterPro:IPR013977); BEST Arabidopsis thaliana protein match is: aminomethyltransferase, putative (TAIR:AT1G11860.2); Has 6316 Blast hits to 6316 proteins in 911 species: Archae - 63; Bacteria - 2535; Metazoa - 139; Fungi - 62; Plants - 58; Viruses - 0; Other Eukaryotes - 3459 (source: NCBI BLink).  protein_id AT1G60990.3p  transcript_id AT1G60990.3  protein_id AT1G60990.3p  transcript_id AT1G60990.3  
At1g60995	chr1:022470423	0.0	C/22470423-22470575,22469810-22469872,22469523-22469628,22469233-22469429,22468721-22468802,22468325-22468386,22468087-22468181,22467908-22467987,22467398-22467481,22467088-22467204,22466915-22467000,22466721-22466827,22466486-22466577,22466325-22466401,22465768-22466238	AT1G60995.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; Has 127 Blast hits to 125 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 97; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G60995.1p  transcript_id AT1G60995.1  protein_id AT1G60995.1p  transcript_id AT1G60995.1  
At1g61000	chr1:022473883	0.0	C/22473883-22474046,22473410-22473628,22473201-22473291,22472954-22473133,22472692-22472781,22472504-22472611,22472029-22472082,22471747-22471861,22471500-22471657,22471308-22471403,22471096-22471143	AT1G61000.1  CDS  gene_syn T7P1.14, T7P1_14  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process mitosis|GO:0007067||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mitosis; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Kinetochore protein Nuf2 (InterPro:IPR005549); BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT1G64330.1); Has 41010 Blast hits to 23184 proteins in 1264 species: Archae - 616; Bacteria - 3998; Metazoa - 20566; Fungi - 2893; Plants - 1316; Viruses - 149; Other Eukaryotes - 11472 (source: NCBI BLink).  protein_id AT1G61000.1p  transcript_id AT1G61000.1  protein_id AT1G61000.1p  transcript_id AT1G61000.1  
At1g61010	chr1:022477517	0.0	C/22477517-22477660,22477327-22477424,22476974-22477019,22476735-22476884,22474954-22476597	AT1G61010.1  CDS  gene_syn CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I, CPSF73-I, T7P1.15, T7P1_15  gene CPSF73-I  go_component nucleus|GO:0005634|16897494|IDA  go_component mRNA cleavage and polyadenylation specificity factor complex|GO:0005847||ISS  go_process mRNA polyadenylation|GO:0006378||ISS  go_function protein binding|GO:0005515|16897494|IPI  product CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I); protein binding  note CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I (CPSF73-I); FUNCTIONS IN: protein binding; INVOLVED IN: mRNA polyadenylation; LOCATED IN: mRNA cleavage and polyadenylation specificity factor complex, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-metabolising metallo-beta-lactamase (InterPro:IPR011108), Beta-lactamase-like (InterPro:IPR001279); BEST Arabidopsis thaliana protein match is: ATCPSF73-II (cleavage and polyadenylation specificity factor 73 kDa subunit-II); catalytic/ protein binding (TAIR:AT2G01730.1); Has 3417 Blast hits to 3370 proteins in 847 species: Archae - 282; Bacteria - 1473; Metazoa - 527; Fungi - 183; Plants - 91; Viruses - 2; Other Eukaryotes - 859 (source: NCBI BLink).  protein_id AT1G61010.1p  transcript_id AT1G61010.1  protein_id AT1G61010.1p  transcript_id AT1G61010.1  
At1g61010	chr1:022477517	0.0	C/22477517-22477660,22477327-22477424,22476974-22477019,22476735-22476884,22474954-22476597	AT1G61010.2  CDS  gene_syn CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I, CPSF73-I, T7P1.15, T7P1_15  gene CPSF73-I  go_component nucleus|GO:0005634|16897494|IDA  go_component mRNA cleavage and polyadenylation specificity factor complex|GO:0005847||ISS  go_process mRNA polyadenylation|GO:0006378||ISS  go_function protein binding|GO:0005515|16897494|IPI  product CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I); protein binding  note CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I (CPSF73-I); FUNCTIONS IN: protein binding; INVOLVED IN: mRNA polyadenylation; LOCATED IN: mRNA cleavage and polyadenylation specificity factor complex, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-metabolising metallo-beta-lactamase (InterPro:IPR011108), Beta-lactamase-like (InterPro:IPR001279); BEST Arabidopsis thaliana protein match is: ATCPSF73-II (cleavage and polyadenylation specificity factor 73 kDa subunit-II); catalytic/ protein binding (TAIR:AT2G01730.1); Has 3417 Blast hits to 3370 proteins in 847 species: Archae - 282; Bacteria - 1473; Metazoa - 527; Fungi - 183; Plants - 91; Viruses - 2; Other Eukaryotes - 859 (source: NCBI BLink).  protein_id AT1G61010.2p  transcript_id AT1G61010.2  protein_id AT1G61010.2p  transcript_id AT1G61010.2  
At1g61010	chr1:022477517	0.0	C/22477517-22477660,22477327-22477424,22476974-22477019,22476735-22476884,22474954-22476597	AT1G61010.3  CDS  gene_syn CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I, CPSF73-I, T7P1.15, T7P1_15  gene CPSF73-I  go_component nucleus|GO:0005634|16897494|IDA  go_component mRNA cleavage and polyadenylation specificity factor complex|GO:0005847||ISS  go_process mRNA polyadenylation|GO:0006378||ISS  go_function protein binding|GO:0005515|16897494|IPI  product CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I); protein binding  note CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I (CPSF73-I); FUNCTIONS IN: protein binding; INVOLVED IN: mRNA polyadenylation; LOCATED IN: mRNA cleavage and polyadenylation specificity factor complex, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-metabolising metallo-beta-lactamase (InterPro:IPR011108), Beta-lactamase-like (InterPro:IPR001279); BEST Arabidopsis thaliana protein match is: ATCPSF73-II (cleavage and polyadenylation specificity factor 73 kDa subunit-II); catalytic/ protein binding (TAIR:AT2G01730.1); Has 3417 Blast hits to 3370 proteins in 847 species: Archae - 282; Bacteria - 1473; Metazoa - 527; Fungi - 183; Plants - 91; Viruses - 2; Other Eukaryotes - 859 (source: NCBI BLink).  protein_id AT1G61010.3p  transcript_id AT1G61010.3  protein_id AT1G61010.3p  transcript_id AT1G61010.3  
At1g61020	chr1:022477773	0.0	C/22477773-22477846	AT1G61020.1  tRNA  gene_syn 60086.TRNA-ARG-1  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: TCG)  transcript_id AT1G61020.1  
At1g61030	chr1:022477969	0.0	W/22477969-22478378,22478482-22478581,22478684-22479023,22479237-22479349,22479714-22479842,22479944-22480037,22480130-22480806,22480982-22481229,22481396-22481543,22481633-22481730,22481814-22481895,22481997-22482080	AT1G61030.1  CDS  gene_syn T7P1.16, T7P1_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11060.1); Has 181 Blast hits to 138 proteins in 52 species: Archae - 0; Bacteria - 2; Metazoa - 143; Fungi - 2; Plants - 20; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G61030.1p  transcript_id AT1G61030.1  protein_id AT1G61030.1p  transcript_id AT1G61030.1  
At1g61040	chr1:022483817	0.0	W/22483817-22485748	AT1G61040.1  CDS  gene_syn T7P1.17, T7P1_17, VIP5, vernalization independence 5  gene VIP5  function Encodes a yeast Paf1C subunit homolog required for the expression of the MADS box gene FLC and other members of the FLC/MAF MADS-box gene family.  go_component nucleus|GO:0005634||IEA  go_function DNA binding|GO:0003677||IEA  go_process negative regulation of flower development|GO:0009910|15472079|IMP  go_process positive regulation of transcription, DNA-dependent|GO:0045893|15472079|IMP  product VIP5 (vernalization independence 5); DNA binding  note vernalization independence 5 (VIP5); FUNCTIONS IN: DNA binding; INVOLVED IN: positive regulation of transcription, DNA-dependent, negative regulation of flower development; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plus-3 domain, subgroup (InterPro:IPR018144), Plus-3 (InterPro:IPR004343); Has 6561 Blast hits to 3149 proteins in 304 species: Archae - 0; Bacteria - 3153; Metazoa - 1868; Fungi - 543; Plants - 185; Viruses - 30; Other Eukaryotes - 782 (source: NCBI BLink).  protein_id AT1G61040.1p  transcript_id AT1G61040.1  protein_id AT1G61040.1p  transcript_id AT1G61040.1  
At1g61050	chr1:022486736	0.0	W/22486736-22488043	AT1G61050.1  CDS  gene_syn T7P1.18, T7P1_18  go_component Golgi stack|GO:0005795||IEA  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing protein  note alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi stack; CONTAINS InterPro DOMAIN/s: Alpha 1,4-glycosyltransferase conserved region (InterPro:IPR007652), Glycosyltransferase sugar-binding region containing DXD motif (InterPro:IPR007577); BEST Arabidopsis thaliana protein match is: alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing protein (TAIR:AT5G01250.1); Has 323 Blast hits to 322 proteins in 68 species: Archae - 0; Bacteria - 27; Metazoa - 188; Fungi - 14; Plants - 53; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT1G61050.1p  transcript_id AT1G61050.1  protein_id AT1G61050.1p  transcript_id AT1G61050.1  
At1g61060	chr1:022489175	0.0	C/22489175-22489711,22488548-22488814	AT1G61060.1  CDS  gene_syn T7P1.19, T7P1_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G53815.1); Has 343 Blast hits to 290 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 343; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G61060.1p  transcript_id AT1G61060.1  protein_id AT1G61060.1p  transcript_id AT1G61060.1  
At1g61065	chr1:022491241	0.0	C/22491241-22491330,22490776-22490978,22490430-22490679	AT1G61065.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27435.1); Has 178 Blast hits to 178 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 178; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G61065.1p  transcript_id AT1G61065.1  protein_id AT1G61065.1p  transcript_id AT1G61065.1  
At1g61070	chr1:022492410	0.0	C/22492410-22492470,22492020-22492189	AT1G61070.1  CDS  gene_syn LCR66, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 66, PDF2.4, PLANT DEFENSIN 2.4, T7P1.20, T7P1_20  gene LCR66  function Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952|18674922|ISS  go_process defense response|GO:0006952||ISS  product LCR66 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 66)  note LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 66 (LCR66); INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Knottin (InterPro:IPR003614), Gamma Purothionin (InterPro:IPR008177); BEST Arabidopsis thaliana protein match is: LCR68 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 68); peptidase inhibitor (TAIR:AT2G02130.1); Has 287 Blast hits to 287 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 287; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G61070.1p  transcript_id AT1G61070.1  protein_id AT1G61070.1p  transcript_id AT1G61070.1  
At1g61080	chr1:022496984	0.0	C/22496984-22497019,22496138-22496500,22495981-22496076,22495768-22495891,22493993-22495677,22493732-22493896,22493483-22493536,22493194-22493394	AT1G61080.1  CDS  gene_syn T7P1.21, T7P1_21  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product proline-rich family protein  note proline-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G04980.1); Has 261037 Blast hits to 82498 proteins in 2125 species: Archae - 555; Bacteria - 50737; Metazoa - 114420; Fungi - 29258; Plants - 29232; Viruses - 7557; Other Eukaryotes - 29278 (source: NCBI BLink).  protein_id AT1G61080.1p  transcript_id AT1G61080.1  protein_id AT1G61080.1p  transcript_id AT1G61080.1  
At1g61090	chr1:022499531	0.0	C/22499531-22499887	AT1G61090.1  CDS  gene_syn T7P1.22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61095.1); Has 9 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G61090.1p  transcript_id AT1G61090.1  protein_id AT1G61090.1p  transcript_id AT1G61090.1  
At1g61093	chr1:022502099	0.0	C/22502099-22502476	AT1G61093.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61095.1); Has 9 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G61093.1p  transcript_id AT1G61093.1  protein_id AT1G61093.1p  transcript_id AT1G61093.1  
At1g61095	chr1:022504701	0.0	C/22504701-22505078	AT1G61095.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61093.1); Has 9 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G61095.1p  transcript_id AT1G61095.1  protein_id AT1G61095.1p  transcript_id AT1G61095.1  
At1g61097	chr1:022507075	0.0	C/22507075-22507479	AT1G61097.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Expressed protein  note Expressed protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61095.1); Has 9 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G61097.1p  transcript_id AT1G61097.1  protein_id AT1G61097.1p  transcript_id AT1G61097.1  
At1g61100	chr1:022512064	0.0	C/22512064-22512122,22511789-22511965,22511452-22511585,22511307-22511359,22511169-22511215,22510914-22511066,22510616-22510806,22509062-22510527,22508831-22508977	AT1G61100.1  CDS  gene_syn F11P17.17, F11P17_17  go_component cellular_component|GO:0005575||ND  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR class), putative  note disease resistance protein (TIR class), putative; INVOLVED IN: defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: CIP7 (COP1-INTERACTING PROTEIN 7); transcription activator (TAIR:AT4G27430.2); Has 1483 Blast hits to 1173 proteins in 180 species: Archae - 4; Bacteria - 96; Metazoa - 658; Fungi - 133; Plants - 105; Viruses - 8; Other Eukaryotes - 479 (source: NCBI BLink).  protein_id AT1G61100.1p  transcript_id AT1G61100.1  protein_id AT1G61100.1p  transcript_id AT1G61100.1  
At1g61105	chr1:022514008	0.0	C/22514008-22514492,22513616-22513697	AT1G61105.1  CDS  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  product disease resistance protein-related  note disease resistance protein-related; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR class), putative (TAIR:AT1G52900.1); Has 618 Blast hits to 607 proteins in 37 species: Archae - 0; Bacteria - 6; Metazoa - 24; Fungi - 0; Plants - 588; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G61105.1p  transcript_id AT1G61105.1  protein_id AT1G61105.1p  transcript_id AT1G61105.1  
At1g61110	chr1:022516730	0.0	W/22516730-22516916,22517061-22517368,22517579-22518055	AT1G61110.1  CDS  gene_syn Arabidopsis NAC domain containing protein 25, F11P17.16, F11P17_16, anac025  gene anac025  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac025 (Arabidopsis NAC domain containing protein 25); transcription factor  note Arabidopsis NAC domain containing protein 25 (anac025); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAM (NO APICAL MERISTEM); transcription factor (TAIR:AT1G52880.1); Has 1627 Blast hits to 1624 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1621; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G61110.1p  transcript_id AT1G61110.1  protein_id AT1G61110.1p  transcript_id AT1G61110.1  
At1g61120	chr1:022523689	0.0	W/22523689-22524073,22524986-22525187,22525279-22525508,22525617-22525740,22525843-22525958,22526221-22526414,22526491-22526606,22526707-22526805,22526946-22527161,22527384-22527513,22527653-22527898,22528023-22528598	AT1G61120.1  CDS  gene_syn F11P17.15, F11P17_15, GERANYLLINALOOL SYNTHASE, GES, TERPENE SYNTHASE 04, TPS04  gene TPS04  function Encodes a geranyllinalool synthase that produces a precursor to TMTT, a volatile plant defense C16-homoterpene. GES transcript levels rise in response to alamethicin, a fungal peptide mixture that damages membranes. This transcriptional response is blocked in JA biosynthetic and JA signaling mutants, but GES transcript levels still rise in response to alamethicin in mutants with salicylic acid and ethylene biosynthetic and/or signaling defects. GES transcripts also accumulate in response to a larval infestation. This enzyme does not localize to the plastids, and it may be present in the cytosol or endoplasmic reticulum.  go_component plastid|GO:0009536|18398052|IDA  go_process response to singlet oxygen|GO:0000304|17075038|IEP  go_process response to wounding|GO:0009611|18398052|IEP  go_process response to jasmonic acid stimulus|GO:0009753|18398052|IGI  go_process diterpenoid biosynthetic process|GO:0016102|18398052|IDA  go_function (E,E)-geranyllinalool synthase activity|GO:0080013|18398052|IDA  product TPS04 (TERPENE SYNTHASE 04); (E,E)-geranyllinalool synthase  note TERPENE SYNTHASE 04 (TPS04); FUNCTIONS IN: (E,E)-geranyllinalool synthase activity; INVOLVED IN: response to jasmonic acid stimulus, diterpenoid biosynthetic process, response to singlet oxygen, response to wounding; LOCATED IN: plastid; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: GA2 (GA REQUIRING 2); ent-kaurene synthase (TAIR:AT1G79460.1); Has 1181 Blast hits to 1174 proteins in 159 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 6; Plants - 1169; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G61120.1p  transcript_id AT1G61120.1  protein_id AT1G61120.1p  transcript_id AT1G61120.1  
At1g61130	chr1:022531538	0.0	C/22531538-22531784,22531267-22531374,22531074-22531169,22530868-22530960,22530677-22530768,22530041-22530310,22529830-22529960,22529627-22529728,22529288-22529393,22529024-22529170	AT1G61130.1  CDS  gene_syn F11P17.14, F11P17_14, SCPL32, SERINE CARBOXYPEPTIDASE-LIKE 32  gene SCPL32  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product SCPL32 (SERINE CARBOXYPEPTIDASE-LIKE 32); serine-type carboxypeptidase  note SERINE CARBOXYPEPTIDASE-LIKE 32 (SCPL32); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, flower, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl31 (serine carboxypeptidase-like 31); serine-type carboxypeptidase (TAIR:AT1G11080.1); Has 2479 Blast hits to 2430 proteins in 288 species: Archae - 0; Bacteria - 140; Metazoa - 579; Fungi - 563; Plants - 870; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink).  protein_id AT1G61130.1p  transcript_id AT1G61130.1  protein_id AT1G61130.1p  transcript_id AT1G61130.1  
At1g61140	chr1:022539750	0.0	C/22539750-22539756,22538539-22539665,22538203-22538274,22537902-22537979,22536923-22537811,22536709-22536839,22536371-22536562,22535554-22536105,22535241-22535450,22535038-22535148	AT1G61140.3  CDS  gene_syn EDA16, F11P17.13, F11P17_13, embryo sac development arrest 16  gene EDA16  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process embryo sac development|GO:0009553|15634699|IMP  go_function DNA binding|GO:0003677||ISS  go_function helicase activity|GO:0004386||ISS  go_function protein binding|GO:0005515||ISS  go_function ATP binding|GO:0005524||ISS  go_function zinc ion binding|GO:0008270||ISS  product EDA16 (embryo sac development arrest 16); ATP binding / DNA binding / helicase/ nucleic acid binding / protein binding / zinc ion binding  note embryo sac development arrest 16 (EDA16); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryo sac development; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G11100.1); Has 15701 Blast hits to 9787 proteins in 914 species: Archae - 60; Bacteria - 3616; Metazoa - 4644; Fungi - 3343; Plants - 1146; Viruses - 130; Other Eukaryotes - 2762 (source: NCBI BLink).  protein_id AT1G61140.3p  transcript_id AT1G61140.3  protein_id AT1G61140.3p  transcript_id AT1G61140.3  
At1g61140	chr1:022540443	0.0	C/22540443-22540610,22540148-22540217,22539777-22540040,22538539-22539665,22538203-22538274,22537902-22537979,22536923-22537811,22536709-22536839,22536293-22536562	AT1G61140.2  CDS  gene_syn EDA16, F11P17.13, F11P17_13, embryo sac development arrest 16  gene EDA16  go_function DNA binding|GO:0003677||IEA  go_function ATP binding|GO:0005524||IEA  go_process embryo sac development|GO:0009553|15634699|IMP  go_function DNA binding|GO:0003677||ISS  go_function helicase activity|GO:0004386||ISS  go_function protein binding|GO:0005515||ISS  go_function ATP binding|GO:0005524||ISS  go_function zinc ion binding|GO:0008270||ISS  product EDA16 (embryo sac development arrest 16); ATP binding / DNA binding / helicase/ protein binding / zinc ion binding  note embryo sac development arrest 16 (EDA16); FUNCTIONS IN: protein binding, helicase activity, DNA binding, zinc ion binding, ATP binding; INVOLVED IN: embryo sac development; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G11100.1); Has 7556 Blast hits to 6929 proteins in 732 species: Archae - 17; Bacteria - 1827; Metazoa - 2194; Fungi - 1807; Plants - 465; Viruses - 52; Other Eukaryotes - 1194 (source: NCBI BLink).  protein_id AT1G61140.2p  transcript_id AT1G61140.2  protein_id AT1G61140.2p  transcript_id AT1G61140.2  
At1g61140	chr1:022540464	0.0	C/22540464-22540610,22540148-22540217,22539777-22540040,22538539-22539665,22538203-22538274,22537902-22537979,22536923-22537811,22536709-22536839,22536371-22536562,22535554-22536105,22535241-22535450,22535038-22535148	AT1G61140.1  CDS  gene_syn EDA16, F11P17.13, F11P17_13, embryo sac development arrest 16  gene EDA16  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process embryo sac development|GO:0009553|15634699|IMP  go_function DNA binding|GO:0003677||ISS  go_function helicase activity|GO:0004386||ISS  go_function protein binding|GO:0005515||ISS  go_function ATP binding|GO:0005524||ISS  go_function zinc ion binding|GO:0008270||ISS  product EDA16 (embryo sac development arrest 16); ATP binding / DNA binding / helicase/ nucleic acid binding / protein binding / zinc ion binding  note embryo sac development arrest 16 (EDA16); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryo sac development; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G11100.1); Has 15943 Blast hits to 9910 proteins in 924 species: Archae - 60; Bacteria - 3799; Metazoa - 4671; Fungi - 3362; Plants - 1146; Viruses - 130; Other Eukaryotes - 2775 (source: NCBI BLink).  protein_id AT1G61140.1p  transcript_id AT1G61140.1  protein_id AT1G61140.1p  transcript_id AT1G61140.1  
At1g61150	chr1:022542928	0.0	W/22542928-22542981,22543107-22543266,22543368-22543474,22543574-22543705,22543837-22543993,22544234-22544355	AT1G61150.1  CDS  gene_syn F11P17.12, F11P17_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif, subgroup (InterPro:IPR013720), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), CT11-RanBPM (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11110.1); Has 740 Blast hits to 708 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 401; Fungi - 144; Plants - 139; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT1G61150.1p  transcript_id AT1G61150.1  protein_id AT1G61150.1p  transcript_id AT1G61150.1  
At1g61150	chr1:022542979	0.0	W/22542979-22542981,22543107-22543266,22543368-22543474,22543574-22543705,22543837-22543993,22544234-22544355	AT1G61150.2  CDS  gene_syn F11P17.12, F11P17_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif, subgroup (InterPro:IPR013720), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), CT11-RanBPM (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09300.1); Has 726 Blast hits to 694 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 389; Fungi - 144; Plants - 139; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT1G61150.2p  transcript_id AT1G61150.2  protein_id AT1G61150.2p  transcript_id AT1G61150.2  
At1g61150	chr1:022542979	0.0	W/22542979-22542981,22543107-22543266,22543368-22543474,22543574-22543705,22543837-22543993,22544234-22544355	AT1G61150.4  CDS  gene_syn F11P17.12, F11P17_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif, subgroup (InterPro:IPR013720), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), CT11-RanBPM (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09300.1); Has 726 Blast hits to 694 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 389; Fungi - 144; Plants - 139; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT1G61150.4p  transcript_id AT1G61150.4  protein_id AT1G61150.4p  transcript_id AT1G61150.4  
At1g61150	chr1:022542979	0.0	W/22542979-22542981,22543107-22543266,22543368-22543474,22543574-22543705,22543837-22543993,22544234-22544355	AT1G61150.6  CDS  gene_syn F11P17.12, F11P17_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif, subgroup (InterPro:IPR013720), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), CT11-RanBPM (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09300.1); Has 726 Blast hits to 694 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 389; Fungi - 144; Plants - 139; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT1G61150.6p  transcript_id AT1G61150.6  protein_id AT1G61150.6p  transcript_id AT1G61150.6  
At1g61150	chr1:022543122	0.0	W/22543122-22543266,22543368-22543474,22543574-22543705,22543837-22543993,22544234-22544355	AT1G61150.5  CDS  gene_syn F11P17.12, F11P17_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif, subgroup (InterPro:IPR013720), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), CT11-RanBPM (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09300.1); Has 726 Blast hits to 694 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 389; Fungi - 144; Plants - 139; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT1G61150.5p  transcript_id AT1G61150.5  protein_id AT1G61150.5p  transcript_id AT1G61150.5  
At1g61150	chr1:022543304	0.0	W/22543304-22543474,22543574-22543705,22543837-22543993,22544234-22544355	AT1G61150.3  CDS  gene_syn F11P17.12, F11P17_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CTLH, C-terminal to LisH motif (InterPro:IPR006595), CT11-RanBPM (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09300.1); Has 486 Blast hits to 476 proteins in 122 species: Archae - 0; Bacteria - 4; Metazoa - 235; Fungi - 76; Plants - 132; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT1G61150.3p  transcript_id AT1G61150.3  protein_id AT1G61150.3p  transcript_id AT1G61150.3  
At1g61150	chr1:022543304	0.0	W/22543304-22543474,22543574-22543705,22543837-22543993,22544234-22544355	AT1G61150.7  CDS  gene_syn F11P17.12, F11P17_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CTLH, C-terminal to LisH motif (InterPro:IPR006595), CT11-RanBPM (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09300.1); Has 486 Blast hits to 476 proteins in 122 species: Archae - 0; Bacteria - 4; Metazoa - 235; Fungi - 76; Plants - 132; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT1G61150.7p  transcript_id AT1G61150.7  protein_id AT1G61150.7p  transcript_id AT1G61150.7  
At1g61160	chr1:022546192	0.0	C/22546192-22546220,22545019-22545553	AT1G61160.1  CDS  gene_syn F11P17.19, F11P17_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G61160.1p  transcript_id AT1G61160.1  protein_id AT1G61160.1p  transcript_id AT1G61160.1  
At1g61165	chr1:022548136	0.0	W/22548136-22548243	AT1G61165.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G61165.1p  transcript_id AT1G61165.1  protein_id AT1G61165.1p  transcript_id AT1G61165.1  
At1g61170	chr1:022549718	0.0	W/22549718-22550473	AT1G61170.1  CDS  gene_syn F11P17.11, F11P17_11  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11120.1); Has 36 Blast hits to 36 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 0; Plants - 15; Viruses - 1; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G61170.1p  transcript_id AT1G61170.1  protein_id AT1G61170.1p  transcript_id AT1G61170.1  
At1g61180	chr1:022551486	0.0	W/22551486-22554110,22554286-22554330	AT1G61180.1  CDS  gene_syn F11P17.10, F11P17_10  go_component plasma membrane|GO:0005886|17644812|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative  note disease resistance protein (CC-NBS-LRR class), putative; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response, apoptosis; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: ATP binding / protein binding (TAIR:AT1G61310.1); Has 16909 Blast hits to 14459 proteins in 601 species: Archae - 23; Bacteria - 1663; Metazoa - 4278; Fungi - 315; Plants - 10181; Viruses - 0; Other Eukaryotes - 449 (source: NCBI BLink).  protein_id AT1G61180.1p  transcript_id AT1G61180.1  protein_id AT1G61180.1p  transcript_id AT1G61180.1  
At1g61180	chr1:022551486	0.0	W/22551486-22554185	AT1G61180.2  CDS  gene_syn F11P17.10, F11P17_10  go_component plasma membrane|GO:0005886|17644812|IDA  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative  note disease resistance protein (CC-NBS-LRR class), putative; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: ATP binding / protein binding (TAIR:AT1G61310.1); Has 16921 Blast hits to 14465 proteins in 601 species: Archae - 23; Bacteria - 1672; Metazoa - 4276; Fungi - 317; Plants - 10184; Viruses - 0; Other Eukaryotes - 449 (source: NCBI BLink).  protein_id AT1G61180.2p  transcript_id AT1G61180.2  protein_id AT1G61180.2p  transcript_id AT1G61180.2  
At1g61190	chr1:022557602	0.0	W/22557602-22560244,22560427-22560687	AT1G61190.1  CDS  gene_syn F11P17.9, F11P17_9  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative  note disease resistance protein (CC-NBS-LRR class), putative; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response, apoptosis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: ATP binding / protein binding (TAIR:AT1G61310.1); Has 14663 Blast hits to 12930 proteins in 550 species: Archae - 16; Bacteria - 1426; Metazoa - 2934; Fungi - 208; Plants - 9735; Viruses - 2; Other Eukaryotes - 342 (source: NCBI BLink).  protein_id AT1G61190.1p  transcript_id AT1G61190.1  protein_id AT1G61190.1p  transcript_id AT1G61190.1  
At1g61200	chr1:022563333	0.0	C/22563333-22563420,22563033-22563160	AT1G61200.1  CDS  gene_syn F11P17.8, F11P17_8  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product homeobox-leucine zipper protein-related  note homeobox-leucine zipper protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: homeobox-leucine zipper protein-related (TAIR:AT1G20280.1); Has 12 Blast hits to 12 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G61200.1p  transcript_id AT1G61200.1  protein_id AT1G61200.1p  transcript_id AT1G61200.1  
At1g61210	chr1:022564785	0.0	W/22564785-22564809,22565102-22565232,22565328-22565445,22565653-22565879,22565975-22566077,22566221-22566291,22566631-22566705,22566796-22566939,22567047-22567209,22567737-22568174,22568270-22568527,22568866-22568922,22569014-22570200,22570389-22570499,22570641-22570715,22570801-22570913,22571108-22571224,22571310-22571378,22571495-22571555	AT1G61210.1  CDS  gene_syn F11P17.7, F11P17_7  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function nucleotide binding|GO:0000166||ISS  product WD-40 repeat family protein / katanin p80 subunit, putative  note WD-40 repeat family protein / katanin p80 subunit, putative; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: nucleotide binding (TAIR:AT1G11160.1); Has 90194 Blast hits to 34367 proteins in 930 species: Archae - 78; Bacteria - 8358; Metazoa - 42710; Fungi - 17495; Plants - 8425; Viruses - 197; Other Eukaryotes - 12931 (source: NCBI BLink).  protein_id AT1G61210.1p  transcript_id AT1G61210.1  protein_id AT1G61210.1p  transcript_id AT1G61210.1  
At1g61215	chr1:022573173	0.0	W/22573173-22573331,22573818-22573867,22573956-22574033,22574150-22574738,22574823-22575374	AT1G61215.1  CDS  gene_syn BRD4, BROMODOMAIN 4, BROMODOMAIN PROTEIN  gene BRD4  function Bromodomain protein with a DNA binding motif  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product BRD4 (BROMODOMAIN 4); DNA binding  note BROMODOMAIN 4 (BRD4); FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT2G42150.1); Has 427 Blast hits to 414 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 335; Fungi - 14; Plants - 52; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G61215.1p  transcript_id AT1G61215.1  protein_id AT1G61215.1p  transcript_id AT1G61215.1  
At1g61224	chr1:022577113	0.0	W/22577113-22577219	AT1G61224.1  miRNA  gene_syn MICRORNA842A, MIR842A  gene MIR842A  function Encodes a microRNA that targets several Jacalin lectin family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCAUGGUCAGAUCCGUCAUCC  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR842A (MICRORNA842A); miRNA  transcript_id AT1G61224.1  
At1g61226	chr1:022577417	0.0	W/22577417-22577691	AT1G61226.1  miRNA  gene_syn MICRORNA846A, MIR846A  gene MIR846A  function Encodes a microRNA that targets several Jacalin lectin family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUGAAUUGAAGUGCUUGAAUU  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR846A (MICRORNA846A); miRNA  transcript_id AT1G61226.1  
At1g61230	chr1:022578951	0.0	W/22578951-22579380,22579533-22579912,22579995-22580450,22580530-22580781	AT1G61230.1  CDS  gene_syn F11P17.5, F11P17_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin lectin family protein (TAIR:AT1G57570.1).  protein_id AT1G61230.1p  transcript_id AT1G61230.1  protein_id AT1G61230.1p  transcript_id AT1G61230.1  
At1g61240	chr1:022582537	0.0	W/22582537-22582608,22582696-22582797,22582890-22582925,22583003-22583113,22583204-22583287,22583365-22583483,22583559-22583660,22583743-22583859,22583956-22584021,22584123-22584189,22584280-22584333,22584441-22584536,22584621-22584647,22584737-22584772,22584862-22585050	AT1G61240.1  CDS  gene_syn F11P17.21, F11P17_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11170.1); Has 178 Blast hits to 178 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 174; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G61240.1p  transcript_id AT1G61240.1  protein_id AT1G61240.1p  transcript_id AT1G61240.1  
At1g61240	chr1:022582537	0.0	W/22582537-22582608,22582696-22582797,22582890-22582925,22583003-22583113,22583204-22583287,22583365-22583483,22583559-22583660,22583743-22583859,22583956-22584021,22584123-22584189,22584280-22584333,22584441-22584536,22584621-22584647,22584737-22584772,22584862-22585050	AT1G61240.2  CDS  gene_syn F11P17.21, F11P17_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11170.1); Has 178 Blast hits to 178 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 174; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G61240.2p  transcript_id AT1G61240.2  protein_id AT1G61240.2p  transcript_id AT1G61240.2  
At1g61240	chr1:022582537	0.0	W/22582537-22582608,22582696-22582797,22582890-22582925,22583003-22583113,22583204-22583287,22583365-22583483,22583559-22583660,22583743-22583859,22583956-22584021,22584123-22584189,22584280-22584333,22584441-22584536,22584621-22584647,22584737-22584772,22584862-22585050	AT1G61240.3  CDS  gene_syn F11P17.21, F11P17_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11170.1); Has 178 Blast hits to 178 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 174; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G61240.3p  transcript_id AT1G61240.3  protein_id AT1G61240.3p  transcript_id AT1G61240.3  
At1g61240	chr1:022582537	0.0	W/22582537-22582608,22582696-22582797,22582890-22582925,22583003-22583113,22583204-22583287,22583365-22583483,22583559-22583660,22583743-22583859,22583956-22584021,22584123-22584189,22584280-22584333,22584441-22584536,22584621-22584647,22584737-22584772,22584862-22585050	AT1G61240.4  CDS  gene_syn F11P17.21, F11P17_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11170.1); Has 178 Blast hits to 178 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 174; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G61240.4p  transcript_id AT1G61240.4  protein_id AT1G61240.4p  transcript_id AT1G61240.4  
At1g61250	chr1:022586035	0.0	W/22586035-22586094,22586467-22586583,22586682-22586744,22586940-22586973,22587129-22587251,22587416-22587478,22587577-22587670,22587774-22587819,22587906-22587973,22588264-22588312,22588412-22588477,22588578-22588664	AT1G61250.1  CDS  gene_syn F11P17.4, F11P17_4, SC3, SECRETORY CARRIER 3  gene SC3  function Encodes a putative secretory carrier membrane protein (SC3).  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process protein transport|GO:0015031||IEA  go_function transmembrane transporter activity|GO:0022857||ISS  product SC3 (SECRETORY CARRIER 3); transmembrane transporter  note SECRETORY CARRIER 3 (SC3); FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273); BEST Arabidopsis thaliana protein match is: secretory carrier membrane protein (SCAMP) family protein (TAIR:AT1G11180.1); Has 536 Blast hits to 536 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 343; Fungi - 12; Plants - 121; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT1G61250.1p  transcript_id AT1G61250.1  protein_id AT1G61250.1p  transcript_id AT1G61250.1  
At1g61255	chr1:022589260	0.0	C/22589260-22589691	AT1G61255.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G21620.1); Has 45 Blast hits to 45 proteins in 7 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G61255.1p  transcript_id AT1G61255.1  protein_id AT1G61255.1p  transcript_id AT1G61255.1  
At1g61260	chr1:022594326	0.0	C/22594326-22594986,22593756-22594129	AT1G61260.1  CDS  gene_syn F11P17.2, F11P17_2  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF761, plant (InterPro:IPR008480); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11220.1); Has 56 Blast hits to 54 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G61260.1p  transcript_id AT1G61260.1  protein_id AT1G61260.1p  transcript_id AT1G61260.1  
At1g61270	chr1:022602087	0.0	C/22602087-22602140,22601797-22601939,22601336-22601725,22600542-22600935,22600358-22600463,22600190-22600281,22599859-22599927,22599665-22599772	AT1G61270.1  CDS  gene_syn T1F9.25  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product lysine and histidine specific transporter, putative  note lysine and histidine specific transporter, putative; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: lysine and histidine specific transporter, putative (TAIR:AT3G01760.1); Has 3082 Blast hits to 3055 proteins in 269 species: Archae - 3; Bacteria - 169; Metazoa - 1193; Fungi - 399; Plants - 867; Viruses - 3; Other Eukaryotes - 448 (source: NCBI BLink).  protein_id AT1G61270.1p  transcript_id AT1G61270.1  protein_id AT1G61270.1p  transcript_id AT1G61270.1  
At1g61275	chr1:022603121	0.0	W/22603121-22603295	AT1G61275.1  snRNA  gene_syn 50834.SNRNA00001, U12, U12 SMALL NUCLEOLAR RNA  gene U12  go_component U12-dependent spliceosome|GO:0005689|10199569|ISS  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|10199569|ISS  go_function molecular_function|GO:0003674||ND  product U12 (U12 SMALL NUCLEOLAR RNA); snRNA  note gi|22293600|emb|AJ505704.1|ATH505704 Arabidopsis thaliana U12 snRNA, partial  transcript_id AT1G61275.1  
At1g61280	chr1:022603586	0.0	W/22603586-22603865,22603948-22604081	AT1G61280.1  CDS  gene_syn T1F9.23, T1F9_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: PIG-P (InterPro:IPR013717), Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit (InterPro:IPR016542); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G39445.1); Has 223 Blast hits to 223 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 56; Plants - 23; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT1G61280.1p  transcript_id AT1G61280.1  protein_id AT1G61280.1p  transcript_id AT1G61280.1  
At1g61290	chr1:022605188	0.0	W/22605188-22605666,22605784-22606216	AT1G61290.1  CDS  gene_syn ATSYP124, SYNTAXIN OF PLANTS 124, SYP124, T1F9.22, T1F9_22  gene SYP124  function member of SYP12 Gene Family  go_component membrane|GO:0016020||IEA  go_process intracellular protein transport|GO:0006886|11115874|TAS  go_process membrane fusion|GO:0006944|11115874|TAS  go_function SNAP receptor activity|GO:0005484|11115874|TAS  product SYP124 (SYNTAXIN OF PLANTS 124); SNAP receptor  note SYNTAXIN OF PLANTS 124 (SYP124); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion, intracellular protein transport; LOCATED IN: membrane; EXPRESSED IN: sperm cell, male gametophyte, sepal, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: SYP125 (SYNTAXIN OF PLANTS 125); SNAP receptor (TAIR:AT1G11250.1); Has 2277 Blast hits to 2253 proteins in 231 species: Archae - 12; Bacteria - 46; Metazoa - 1133; Fungi - 373; Plants - 288; Viruses - 0; Other Eukaryotes - 425 (source: NCBI BLink).  protein_id AT1G61290.1p  transcript_id AT1G61290.1  protein_id AT1G61290.1p  transcript_id AT1G61290.1  
At1g61300	chr1:022607890	0.0	C/22607890-22610175,22607714-22607716	AT1G61300.1  CDS  gene_syn T1F9.21, T1F9_21  go_component endomembrane system|GO:0012505||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (NBS-LRR class), putative  note disease resistance protein (NBS-LRR class), putative; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response, apoptosis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT1G61180.2); Has 18148 Blast hits to 14890 proteins in 588 species: Archae - 18; Bacteria - 2646; Metazoa - 3971; Fungi - 258; Plants - 10874; Viruses - 2; Other Eukaryotes - 379 (source: NCBI BLink).  protein_id AT1G61300.1p  transcript_id AT1G61300.1  protein_id AT1G61300.1p  transcript_id AT1G61300.1  
At1g61310	chr1:022613166	0.0	C/22613166-22615943	AT1G61310.1  CDS  gene_syn T1F9.20, T1F9_20  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product ATP binding / protein binding  note ATP binding / protein binding; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response, apoptosis; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT1G61180.2); Has 17307 Blast hits to 14353 proteins in 622 species: Archae - 25; Bacteria - 2637; Metazoa - 3770; Fungi - 277; Plants - 10155; Viruses - 2; Other Eukaryotes - 441 (source: NCBI BLink).  protein_id AT1G61310.1p  transcript_id AT1G61310.1  protein_id AT1G61310.1p  transcript_id AT1G61310.1  
At1g61320	chr1:022617370	0.0	W/22617370-22618278,22619142-22619309,22619416-22619718	AT1G61320.1  CDS  gene_syn T1F9.19, T1F9_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G61330.1); Has 264 Blast hits to 264 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 264; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G61320.1p  transcript_id AT1G61320.1  protein_id AT1G61320.1p  transcript_id AT1G61320.1  
At1g61330	chr1:022622975	0.0	W/22622975-22623850,22623977-22624141,22624225-22624527	AT1G61330.1  CDS  gene_syn T1F9.18, T1F9_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61320.1); Has 664 Blast hits to 658 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 658; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G61330.1p  transcript_id AT1G61330.1  protein_id AT1G61330.1p  transcript_id AT1G61330.1  
At1g61340	chr1:022628526	0.0	W/22628526-22628792,22629360-22629434,22629526-22629741	AT1G61340.1  CDS  gene_syn T1F9.17, T1F9_17  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G21510.1); Has 51 Blast hits to 51 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G61340.1p  transcript_id AT1G61340.1  protein_id AT1G61340.1p  transcript_id AT1G61340.1  
At1g61350	chr1:022634099	0.0	W/22634099-22635820	AT1G61350.1  CDS  gene_syn T1F9.16, T1F9_16  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product armadillo/beta-catenin repeat family protein  note armadillo/beta-catenin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein (TAIR:AT2G45720.2); Has 702 Blast hits to 611 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 225; Fungi - 82; Plants - 346; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT1G61350.1p  transcript_id AT1G61350.1  protein_id AT1G61350.1p  transcript_id AT1G61350.1  
At1g61353	chr1:022636595	0.0	C/22636595-22636768	AT1G61353.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G61353.1p  transcript_id AT1G61353.1  protein_id AT1G61353.1p  transcript_id AT1G61353.1  
At1g61360	chr1:022639714	0.0	C/22639714-22640731,22639516-22639626,22639157-22639326,22638858-22639068,22638522-22638759,22638276-22638426,22637867-22638190	AT1G61360.2  CDS  gene_syn T1F9.15, T1F9_15  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product S-locus lectin protein kinase family protein  note S-locus lectin protein kinase family protein; FUNCTIONS IN: in 7 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-like, type 2 (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: SD1-29 (S-DOMAIN-1 29); carbohydrate binding / kinase/ protein kinase (TAIR:AT1G61380.1).  protein_id AT1G61360.2p  transcript_id AT1G61360.2  protein_id AT1G61360.2p  transcript_id AT1G61360.2  
At1g61360	chr1:022639714	0.0	C/22639714-22640974,22639516-22639626,22639157-22639326,22638858-22639068,22638522-22638759,22638276-22638426,22637867-22638190	AT1G61360.1  CDS  gene_syn T1F9.15, T1F9_15  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product S-locus lectin protein kinase family protein  note S-locus lectin protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), PAN-like, type 2 (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), EGF (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: SD1-29 (S-DOMAIN-1 29); carbohydrate binding / kinase/ protein kinase (TAIR:AT1G61380.1); Has 90844 Blast hits to 89410 proteins in 3263 species: Archae - 63; Bacteria - 7784; Metazoa - 39638; Fungi - 7233; Plants - 20141; Viruses - 449; Other Eukaryotes - 15536 (source: NCBI BLink).  protein_id AT1G61360.1p  transcript_id AT1G61360.1  protein_id AT1G61360.1p  transcript_id AT1G61360.1  
At1g61370	chr1:022643869	0.0	C/22643869-22645147,22643647-22643757,22643361-22643521,22643063-22643273,22642713-22642950,22642474-22642624,22642096-22642389	AT1G61370.1  CDS  gene_syn T1F9.14, T1F9_14  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product S-locus lectin protein kinase family protein  note S-locus lectin protein kinase family protein; FUNCTIONS IN: in 7 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609), PAN-like, type 2 (InterPro:IPR013227), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: S-locus protein kinase, putative (TAIR:AT1G61390.1); Has 87026 Blast hits to 85743 proteins in 3217 species: Archae - 57; Bacteria - 7634; Metazoa - 38038; Fungi - 6607; Plants - 19676; Viruses - 381; Other Eukaryotes - 14633 (source: NCBI BLink).  protein_id AT1G61370.1p  transcript_id AT1G61370.1  protein_id AT1G61370.1p  transcript_id AT1G61370.1  
At1g61380	chr1:022648138	0.0	C/22648138-22649401,22647918-22648028,22647554-22647690,22647267-22647477,22646925-22647162,22646680-22646830,22646277-22646582	AT1G61380.1  CDS  gene_syn S-DOMAIN-1 29, SD1-29, T1F9.13, T1F9_13  gene SD1-29  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid autophosphorylation|GO:0046777|18552232|IDA  go_function protein kinase activity|GO:0004672|18552232|IDA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product SD1-29 (S-DOMAIN-1 29); carbohydrate binding / kinase/ protein kinase  note S-DOMAIN-1 29 (SD1-29); FUNCTIONS IN: carbohydrate binding, protein kinase activity, kinase activity; INVOLVED IN: protein amino acid autophosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-like, type 2 (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), EGF (InterPro:IPR006210), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: S-locus protein kinase, putative (TAIR:AT1G61390.1); Has 84697 Blast hits to 83584 proteins in 3035 species: Archae - 57; Bacteria - 7166; Metazoa - 36985; Fungi - 6431; Plants - 19526; Viruses - 363; Other Eukaryotes - 14169 (source: NCBI BLink).  protein_id AT1G61380.1p  transcript_id AT1G61380.1  protein_id AT1G61380.1p  transcript_id AT1G61380.1  
At1g61390	chr1:022652313	0.0	C/22652313-22653135,22652093-22652203,22651618-22651787,22651315-22651525,22650965-22651202,22650735-22650879,22650338-22650631	AT1G61390.2  CDS  gene_syn T1F9.12, T1F9_12  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product S-locus protein kinase, putative  note S-locus protein kinase, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; CONTAINS InterPro DOMAIN/s: PAN-like, type 2 (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: SD1-29 (S-DOMAIN-1 29); carbohydrate binding / kinase/ protein kinase (TAIR:AT1G61380.1).  protein_id AT1G61390.2p  transcript_id AT1G61390.2  protein_id AT1G61390.2p  transcript_id AT1G61390.2  
At1g61390	chr1:022652313	0.0	C/22652313-22653639,22652093-22652203,22651618-22651787,22651315-22651525,22650965-22651202,22650735-22650879,22650338-22650631	AT1G61390.1  CDS  gene_syn T1F9.12, T1F9_12  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product S-locus protein kinase, putative  note S-locus protein kinase, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-like, type 2 (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), EGF (InterPro:IPR006210), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: SD1-29 (S-DOMAIN-1 29); carbohydrate binding / kinase/ protein kinase (TAIR:AT1G61380.1); Has 87192 Blast hits to 85932 proteins in 3186 species: Archae - 53; Bacteria - 7368; Metazoa - 38436; Fungi - 6727; Plants - 19502; Viruses - 379; Other Eukaryotes - 14727 (source: NCBI BLink).  protein_id AT1G61390.1p  transcript_id AT1G61390.1  protein_id AT1G61390.1p  transcript_id AT1G61390.1  
At1g61400	chr1:022656490	0.0	C/22656490-22657774,22656266-22656376,22655872-22656020,22655595-22655805,22655266-22655527,22655030-22655180,22654638-22654934	AT1G61400.1  CDS  gene_syn T1F9.11, T1F9_11  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product S-locus protein kinase, putative  note S-locus protein kinase, putative; FUNCTIONS IN: in 7 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: F mature embryo stage, LP.10 ten leaves visible, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-like, type 2 (InterPro:IPR013227), Protein kinase, ATP binding site (InterPro:IPR017441), Apple-like (InterPro:IPR003609), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: S-locus protein kinase, putative (TAIR:AT1G61440.1); Has 87480 Blast hits to 86170 proteins in 3269 species: Archae - 53; Bacteria - 7495; Metazoa - 38685; Fungi - 6666; Plants - 19525; Viruses - 412; Other Eukaryotes - 14644 (source: NCBI BLink).  protein_id AT1G61400.1p  transcript_id AT1G61400.1  protein_id AT1G61400.1p  transcript_id AT1G61400.1  
At1g61410	chr1:022658708	0.0	C/22658708-22659064	AT1G61410.1  CDS  gene_syn T1F9.10, T1F9_10  go_component nucleus|GO:0005634||IEA  go_process double-strand break repair|GO:0006302||IEA  go_process DNA recombination|GO:0006310||IEA  go_function DNA binding|GO:0003677||IEA  go_function protein binding|GO:0005515||IEA  product tolA protein-related  note tolA protein-related; FUNCTIONS IN: protein binding, DNA binding; INVOLVED IN: double-strand break repair, DNA recombination; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA double-strand break repair and VJ recombination XRCC4, C-terminal (InterPro:IPR014751); BEST Arabidopsis thaliana protein match is: XRCC4; protein C-terminus binding (TAIR:AT3G23100.2); Has 68 Blast hits to 68 proteins in 31 species: Archae - 0; Bacteria - 23; Metazoa - 14; Fungi - 5; Plants - 21; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G61410.1p  transcript_id AT1G61410.1  protein_id AT1G61410.1p  transcript_id AT1G61410.1  
At1g61415	chr1:022659661	0.0	W/22659661-22659720,22659801-22659963,22660054-22660147,22660234-22660420	AT1G61415.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61450.1); Has 33 Blast hits to 33 proteins in 9 species: Archae - 0; Bacteria - 4; Metazoa - 16; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G61415.1p  transcript_id AT1G61415.1  protein_id AT1G61415.1p  transcript_id AT1G61415.1  
At1g61415	chr1:022659792	0.0	W/22659792-22659963,22660054-22660147,22660234-22660420	AT1G61415.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61450.1); Has 32 Blast hits to 32 proteins in 9 species: Archae - 0; Bacteria - 2; Metazoa - 13; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G61415.2p  transcript_id AT1G61415.2  protein_id AT1G61415.2p  transcript_id AT1G61415.2  
At1g61420	chr1:022662342	0.0	C/22662342-22663596,22662102-22662212,22661815-22661978,22661525-22661735,22661191-22661428,22660941-22661091,22660557-22660850	AT1G61420.1  CDS  gene_syn T1F9.9, T1F9_9  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product S-locus lectin protein kinase family protein  note S-locus lectin protein kinase family protein; FUNCTIONS IN: in 7 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-like, type 2 (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: S-locus protein kinase, putative (TAIR:AT1G61480.1); Has 90120 Blast hits to 88671 proteins in 3221 species: Archae - 57; Bacteria - 7627; Metazoa - 39503; Fungi - 7072; Plants - 20038; Viruses - 425; Other Eukaryotes - 15398 (source: NCBI BLink).  protein_id AT1G61420.1p  transcript_id AT1G61420.1  protein_id AT1G61420.1p  transcript_id AT1G61420.1  
At1g61430	chr1:022666518	0.0	C/22666518-22667769,22666282-22666392,22665882-22666042,22665605-22665815,22665289-22665526,22665055-22665205,22664669-22664965	AT1G61430.1  CDS  gene_syn T1F9.8, T1F9_8  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product S-locus protein kinase, putative  note S-locus protein kinase, putative; FUNCTIONS IN: in 7 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-like, type 2 (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: S-locus protein kinase, putative (TAIR:AT1G61440.1); Has 87173 Blast hits to 85910 proteins in 3093 species: Archae - 55; Bacteria - 7595; Metazoa - 38320; Fungi - 6601; Plants - 19577; Viruses - 379; Other Eukaryotes - 14646 (source: NCBI BLink).  protein_id AT1G61430.1p  transcript_id AT1G61430.1  protein_id AT1G61430.1p  transcript_id AT1G61430.1  
At1g61440	chr1:022671090	0.0	C/22671090-22672323,22670854-22670964,22670467-22670603,22670181-22670391,22669862-22670099,22669629-22669779,22669245-22669541	AT1G61440.1  CDS  gene_syn T1F9.7, T1F9_7  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product S-locus protein kinase, putative  note S-locus protein kinase, putative; FUNCTIONS IN: in 7 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609), PAN-like, type 2 (InterPro:IPR013227), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: S-locus protein kinase, putative (TAIR:AT1G61400.1); Has 89268 Blast hits to 87847 proteins in 3482 species: Archae - 55; Bacteria - 7610; Metazoa - 39517; Fungi - 6772; Plants - 19852; Viruses - 399; Other Eukaryotes - 15063 (source: NCBI BLink).  protein_id AT1G61440.1p  transcript_id AT1G61440.1  protein_id AT1G61440.1p  transcript_id AT1G61440.1  
At1g61450	chr1:022673322	0.0	W/22673322-22673381,22673462-22673624,22673702-22673796,22673877-22673921	AT1G61450.1  CDS  gene_syn T1F9.6, T1F9_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61415.1); Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G61450.1p  transcript_id AT1G61450.1  protein_id AT1G61450.1p  transcript_id AT1G61450.1  
At1g61460	chr1:022676545	0.0	C/22676545-22676735,22675940-22676448,22675701-22675811,22675453-22675598,22675163-22675373,22674827-22675064,22674640-22674736,22674268-22674561	AT1G61460.1  CDS  gene_syn T1F9.5, T1F9_5  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product S-locus protein kinase, putative  note S-locus protein kinase, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: PAN-like, type 2 (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G61420.1); Has 80422 Blast hits to 79480 proteins in 2969 species: Archae - 38; Bacteria - 6136; Metazoa - 35834; Fungi - 6105; Plants - 18859; Viruses - 275; Other Eukaryotes - 13175 (source: NCBI BLink).  protein_id AT1G61460.1p  transcript_id AT1G61460.1  protein_id AT1G61460.1p  transcript_id AT1G61460.1  
At1g61470	chr1:022678185	0.0	W/22678185-22679021	AT1G61470.1  CDS  gene_syn T1F9.4, T1F9_4  go_component nucleus|GO:0005634||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process RNA modification|GO:0009451||ISS  go_function ribonuclease activity|GO:0004540||ISS  product CCR4-NOT transcription complex protein, putative  note CCR4-NOT transcription complex protein, putative; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: CCR4-NOT transcription complex protein, putative (TAIR:AT1G27820.1); Has 633 Blast hits to 633 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 234; Fungi - 93; Plants - 208; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT1G61470.1p  transcript_id AT1G61470.1  protein_id AT1G61470.1p  transcript_id AT1G61470.1  
At1g61475	chr1:022680705	0.0	C/22680705-22680771,22680500-22680598,22680228-22680391,22680056-22680166,22679770-22679967	AT1G61475.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  product ATP binding / protein kinase  note ATP binding / protein kinase; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G61420.1).  protein_id AT1G61475.1p  transcript_id AT1G61475.1  protein_id AT1G61475.1p  transcript_id AT1G61475.1  
At1g61480	chr1:022683150	0.0	C/22683150-22684404,22682935-22683045,22682661-22682830,22682370-22682580,22682036-22682273,22681806-22681956,22681420-22681713	AT1G61480.1  CDS  gene_syn T1F9.2, T1F9_2  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product S-locus protein kinase, putative  note S-locus protein kinase, putative; FUNCTIONS IN: in 7 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-like, type 2 (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: S-locus protein kinase, putative (TAIR:AT1G61490.1); Has 90802 Blast hits to 89369 proteins in 3197 species: Archae - 57; Bacteria - 7801; Metazoa - 39649; Fungi - 7168; Plants - 20140; Viruses - 426; Other Eukaryotes - 15561 (source: NCBI BLink).  protein_id AT1G61480.1p  transcript_id AT1G61480.1  protein_id AT1G61480.1p  transcript_id AT1G61480.1  
At1g61490	chr1:022687013	0.0	C/22687013-22688267,22686778-22686888,22686415-22686566,22686126-22686336,22685800-22686037,22685552-22685702,22685154-22685450	AT1G61490.1  CDS  gene_syn T1F9.1, T1F9_1  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product S-locus protein kinase, putative  note S-locus protein kinase, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: stem, sperm cell; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), PAN-like, type 2 (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: S-locus protein kinase, putative (TAIR:AT1G61480.1); Has 87995 Blast hits to 86784 proteins in 3268 species: Archae - 55; Bacteria - 7493; Metazoa - 38578; Fungi - 6771; Plants - 19799; Viruses - 389; Other Eukaryotes - 14910 (source: NCBI BLink).  protein_id AT1G61490.1p  transcript_id AT1G61490.1  protein_id AT1G61490.1p  transcript_id AT1G61490.1  
At1g61500	chr1:022691624	0.0	C/22691624-22692881,22691430-22691540,22691006-22691157,22690717-22690927,22690391-22690628,22690150-22690300,22689729-22690022	AT1G61500.1  CDS  gene_syn T25B24.15, T25B24_15  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product S-locus protein kinase, putative  note S-locus protein kinase, putative; FUNCTIONS IN: in 7 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, embryo, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-like, type 2 (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: S-locus protein kinase, putative (TAIR:AT1G61490.1); Has 89051 Blast hits to 87785 proteins in 3244 species: Archae - 55; Bacteria - 7563; Metazoa - 39089; Fungi - 6965; Plants - 19872; Viruses - 394; Other Eukaryotes - 15113 (source: NCBI BLink).  protein_id AT1G61500.1p  transcript_id AT1G61500.1  protein_id AT1G61500.1p  transcript_id AT1G61500.1  
At1g61510	chr1:022694841	0.0	C/22694841-22697374	AT1G61510.1  mRNA_TE_gene  pseudo  gene_syn T25B24.14, T25B24_14  note Transposable element gene, transposase IS4 family protein, contains Pfam profile: PF01609 transposase DDE domain  
At1g61520	chr1:022700152	0.0	W/22700152-22700295,22700385-22700446,22700534-22701149	AT1G61520.1  CDS  gene_syn LHCA3, LHCA3*1, LHCI-680, T25B24.12, T25B24_12  gene LHCA3  function PSI type III chlorophyll a/b-binding protein (Lhca3*1)  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process photosynthesis, light harvesting|GO:0009765||IEA  go_component plastoglobule|GO:0010287|16414959|IDA  go_component light-harvesting complex|GO:0030076||ISS  go_process photosynthesis|GO:0015979||ISS  go_function chlorophyll binding|GO:0016168||ISS  product LHCA3; chlorophyll binding  note LHCA3; FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting, photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4); chlorophyll binding (TAIR:AT3G47470.1); Has 1789 Blast hits to 1709 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 1544; Viruses - 0; Other Eukaryotes - 241 (source: NCBI BLink).  protein_id AT1G61520.1p  transcript_id AT1G61520.1  protein_id AT1G61520.1p  transcript_id AT1G61520.1  
At1g61520	chr1:022700493	0.0	W/22700493-22701149	AT1G61520.2  CDS  gene_syn LHCA3, LHCA3*1, LHCI-680, T25B24.12, T25B24_12  gene LHCA3  function PSI type III chlorophyll a/b-binding protein (Lhca3*1)  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process photosynthesis, light harvesting|GO:0009765||IEA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_component light-harvesting complex|GO:0030076||ISS  go_process photosynthesis|GO:0015979||ISS  go_function chlorophyll binding|GO:0016168||ISS  product LHCA3; chlorophyll binding  note LHCA3; FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast thylakoid membrane, chloroplast, plastoglobule, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4); chlorophyll binding (TAIR:AT3G47470.1); Has 1787 Blast hits to 1691 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 1538; Viruses - 0; Other Eukaryotes - 245 (source: NCBI BLink).  protein_id AT1G61520.2p  transcript_id AT1G61520.2  protein_id AT1G61520.2p  transcript_id AT1G61520.2  
At1g61665	chr1:022701490	0.0	C/22701490-22701746	AT1G61665.1  pseudogenic_transcript  pseudo  gene_syn T13M11.17  note pseudogene, similar to serine/threonine kinase, blastp match of 55% identity and 3.4e-14 P-value to GP|2181190|emb|CAA73134.1||Y12531 serine/threonine kinase {Brassica oleracea}  
At1g61540	chr1:022702498	0.0	W/22702498-22703706	AT1G61540.1  CDS  gene_syn T25B24.11, T25B24_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G39590.1); Has 1110 Blast hits to 1047 proteins in 86 species: Archae - 2; Bacteria - 37; Metazoa - 464; Fungi - 4; Plants - 573; Viruses - 4; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G61540.1p  transcript_id AT1G61540.1  protein_id AT1G61540.1p  transcript_id AT1G61540.1  
At1g61542	chr1:022704010	0.0	W/22704010-22704396	AT1G61542.1  pseudogenic_transcript  pseudo  function pseudogenen of kelch repeat-containing F-box family protein  
At1g61550	chr1:022706587	0.0	C/22706587-22707826,22706368-22706478,22706110-22706273,22705818-22706028,22705504-22705741,22705266-22705416,22704866-22705159	AT1G61550.1  CDS  gene_syn T25B24.10, T25B24_10  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product S-locus protein kinase, putative  note S-locus protein kinase, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, root; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-like, type 2 (InterPro:IPR013227), Apple-like (InterPro:IPR003609), EGF-like, type 3 (InterPro:IPR000742), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: S-locus protein kinase, putative (TAIR:AT1G61480.1); Has 87433 Blast hits to 86271 proteins in 3142 species: Archae - 49; Bacteria - 7379; Metazoa - 38555; Fungi - 6735; Plants - 19516; Viruses - 406; Other Eukaryotes - 14793 (source: NCBI BLink).  protein_id AT1G61550.1p  transcript_id AT1G61550.1  protein_id AT1G61550.1p  transcript_id AT1G61550.1  
At1g61560	chr1:022711910	0.0	C/22711910-22712032,22711599-22711656,22711237-22711493,22711046-22711162,22710884-22710944,22710633-22710796,22710428-22710522,22710299-22710348,22710163-22710203,22709902-22710075,22709784-22709819,22709623-22709690,22709408-22709468,22708875-22709321	AT1G61560.1  CDS  gene_syn ATMLO6, MILDEW RESISTANCE LOCUS O 6, MLO6, T25B24.9, T25B24_9  gene MLO6  function A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO6 belongs to the clade IV, with AtMLO2, AtMLO3 and AtMLO12. The gene is expressed during early seedling growth, in roots and lateral root primordia, in flower and fruit abscission zone, in vascular system of cotyledons, young leaves and petals, in mature rosette leaves, in anthers, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).  go_component plasma membrane|GO:0005886|16525893|TAS  go_component plasma membrane|GO:0005886||ISS  go_process defense response|GO:0006952||ISS  go_process cell death|GO:0008219||ISS  go_process defense response to fungus, incompatible interaction|GO:0009817|16732289|IMP  go_function calmodulin binding|GO:0005516||ISS  product MLO6 (MILDEW RESISTANCE LOCUS O 6); calmodulin binding  note MILDEW RESISTANCE LOCUS O 6 (MLO6); FUNCTIONS IN: calmodulin binding; INVOLVED IN: defense response to fungus, incompatible interaction, cell death, defense response; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326); BEST Arabidopsis thaliana protein match is: MLO2 (MILDEW RESISTANCE LOCUS O 2); calmodulin binding (TAIR:AT1G11310.1); Has 304 Blast hits to 295 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 300; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G61560.1p  transcript_id AT1G61560.1  protein_id AT1G61560.1p  transcript_id AT1G61560.1  
At1g61563	chr1:022715081	0.0	C/22715081-22715329	AT1G61563.1  CDS  gene_syn RALFL8, ralf-like 8  gene RALFL8  function Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component apoplast|GO:0048046|12611624|ISS  go_process cell-cell signaling|GO:0007267|12611624|ISS  go_function signal transducer activity|GO:0004871|12611624|TAS  product RALFL8 (ralf-like 8); signal transducer  note ralf-like 8 (RALFL8); FUNCTIONS IN: signal transducer activity; INVOLVED IN: N-terminal protein myristoylation, cell-cell signaling; LOCATED IN: apoplast; EXPRESSED IN: flower; EXPRESSED DURING: rosette growth complete; CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALFL15 (RALF-LIKE 15); signal transducer (TAIR:AT2G22055.1); Has 10 Blast hits to 10 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G61563.1p  transcript_id AT1G61563.1  protein_id AT1G61563.1p  transcript_id AT1G61563.1  
At1g61566	chr1:022717265	0.0	C/22717265-22717492	AT1G61566.1  CDS  gene_syn RALFL9, ralf-like 9  gene RALFL9  function Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  go_component apoplast|GO:0048046|12611624|ISS  go_process cell-cell signaling|GO:0007267|12611624|ISS  go_function signal transducer activity|GO:0004871|12611624|TAS  product RALFL9 (ralf-like 9); signal transducer  note ralf-like 9 (RALFL9); FUNCTIONS IN: signal transducer activity; INVOLVED IN: cell-cell signaling; LOCATED IN: apoplast; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALFL8 (ralf-like 8); signal transducer (TAIR:AT1G61563.1); Has 23 Blast hits to 23 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G61566.1p  transcript_id AT1G61566.1  protein_id AT1G61566.1p  transcript_id AT1G61566.1  
At1g61570	chr1:022719357	0.0	C/22719357-22719473,22718897-22719043	AT1G61570.1  CDS  gene_syn T25B24.8, T25B24_8, TIM13, TRANSLOCASE OF THE INNER MITOCHONDRIAL MEMBRANE 13  gene TIM13  function Encodes a putative small zinc finger-like protein (TIM13); nucleus-encoded gene whose product is found in the mitochondrial inner membrane space.  go_process protein targeting to mitochondrion|GO:0006626||IEA  go_process protein import into mitochondrial inner membrane|GO:0045039||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|14730085|IDA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_component mitochondrial intermembrane space|GO:0005758|14730085|IDA  go_process protein targeting to mitochondrion|GO:0006626||ISS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product TIM13 (TRANSLOCASE OF THE INNER MITOCHONDRIAL MEMBRANE 13); P-P-bond-hydrolysis-driven protein transmembrane transporter  note TRANSLOCASE OF THE INNER MITOCHONDRIAL MEMBRANE 13 (TIM13); FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein import into mitochondrial inner membrane, protein targeting to mitochondrion; LOCATED IN: mitochondrion, mitochondrial inner membrane, mitochondrial intermembrane space; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Tim10/DDP-type (InterPro:IPR004217); Has 464 Blast hits to 464 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 272; Fungi - 92; Plants - 89; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G61570.1p  transcript_id AT1G61570.1  protein_id AT1G61570.1p  transcript_id AT1G61570.1  
At1g61575	chr1:022720078	0.0	W/22720078-22720149,22720270-22720356	AT1G61575.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G61575.1p  transcript_id AT1G61575.1  protein_id AT1G61575.1p  transcript_id AT1G61575.1  
At1g61580	chr1:022722318	0.0	C/22722318-22722402,22722068-22722178,22721680-22721984,22721192-22721601,22720833-22721094	AT1G61580.1  CDS  gene_syn ARABIDOPSIS RIBOSOMAL PROTEIN 2, ARP2, R-PROTEIN L3 B, RIBOSOMAL PROTEIN L3, RPL3B, T25B24.7, T25B24_7  gene RPL3B  go_component membrane|GO:0016020|17432890|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_component cytosolic large ribosomal subunit|GO:0022625|2227432|TAS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product RPL3B (R-PROTEIN L3 B); structural constituent of ribosome  note R-PROTEIN L3 B (RPL3B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, ribosome, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L3 (InterPro:IPR000597), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1); structural constituent of ribosome (TAIR:AT1G43170.3); Has 1795 Blast hits to 1786 proteins in 542 species: Archae - 230; Bacteria - 519; Metazoa - 375; Fungi - 109; Plants - 152; Viruses - 1; Other Eukaryotes - 409 (source: NCBI BLink).  protein_id AT1G61580.1p  transcript_id AT1G61580.1  protein_id AT1G61580.1p  transcript_id AT1G61580.1  
At1g61590	chr1:022725579	0.0	C/22725579-22726022,22724969-22725104,22724721-22724857,22724492-22724615,22723691-22724124	AT1G61590.1  CDS  gene_syn T25B24.6, T25B24_6  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT2G05940.1); Has 82808 Blast hits to 81792 proteins in 2557 species: Archae - 46; Bacteria - 7572; Metazoa - 36282; Fungi - 6372; Plants - 18222; Viruses - 345; Other Eukaryotes - 13969 (source: NCBI BLink).  protein_id AT1G61590.1p  transcript_id AT1G61590.1  protein_id AT1G61590.1p  transcript_id AT1G61590.1  
At1g61600	chr1:022729816	0.0	W/22729816-22730138,22730240-22731182	AT1G61600.1  CDS  gene_syn T25B24.5, T25B24_5  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13520.1); Has 56 Blast hits to 53 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G61600.1p  transcript_id AT1G61600.1  protein_id AT1G61600.1p  transcript_id AT1G61600.1  
At1g61610	chr1:022733472	0.0	W/22733472-22734777,22734860-22734970,22735049-22735254,22735343-22735553,22735630-22735867,22735956-22736103,22736201-22736509	AT1G61610.1  CDS  gene_syn T25B24.4, T25B24_4  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product S-locus lectin protein kinase family protein  note S-locus lectin protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), PAN-like, type 2 (InterPro:IPR013227), Apple-like (InterPro:IPR003609), EGF-like, type 3 (InterPro:IPR000742), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), EGF (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: B120; ATP binding / protein kinase/ protein serine/threonine kinase/ sugar binding (TAIR:AT4G21390.1); Has 88180 Blast hits to 86849 proteins in 3240 species: Archae - 53; Bacteria - 7599; Metazoa - 38480; Fungi - 6859; Plants - 19793; Viruses - 366; Other Eukaryotes - 15030 (source: NCBI BLink).  protein_id AT1G61610.1p  transcript_id AT1G61610.1  protein_id AT1G61610.1p  transcript_id AT1G61610.1  
At1g61620	chr1:022737653	0.0	W/22737653-22737891,22738516-22739209	AT1G61620.1  CDS  gene_syn T25B24.3, T25B24_3  go_process signal transduction|GO:0007165|15358268|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product phosphoinositide binding  note phosphoinositide binding; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Nitric oxide synthase-interacting (InterPro:IPR016818), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); Has 380 Blast hits to 380 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 147; Fungi - 84; Plants - 96; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT1G61620.1p  transcript_id AT1G61620.1  protein_id AT1G61620.1p  transcript_id AT1G61620.1  
At1g61630	chr1:022744207	0.0	W/22744207-22744242,22744352-22744456,22744551-22744706,22744793-22744936,22745022-22745127,22745221-22745557,22745647-22745905,22746001-22746111	AT1G61630.1  CDS  gene_syn T25B24.2, T25B24_2  go_component plasma membrane|GO:0005886|17317660|IDA  go_process transport|GO:0006810||IEA  go_function nucleoside transmembrane transporter activity|GO:0005337||ISS  product equilibrative nucleoside transporter, putative (ENT7)  note equilibrative nucleoside transporter, putative (ENT7); FUNCTIONS IN: nucleoside transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: plasma membrane; EXPRESSED IN: sperm cell, leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Delayed-early response protein/equilibrative nucleoside transporter (InterPro:IPR002259); BEST Arabidopsis thaliana protein match is: FUR1 (FUDR RESISTANT 1); nucleoside transmembrane transporter (TAIR:AT4G05120.1); Has 696 Blast hits to 673 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 370; Fungi - 72; Plants - 93; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT1G61630.1p  transcript_id AT1G61630.1  protein_id AT1G61630.1p  transcript_id AT1G61630.1  
At1g61640	chr1:022749037	0.0	C/22749037-22749053,22747419-22748835	AT1G61640.2  CDS  gene_syn T25B24.1, T25B24_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ABC1 family protein  note ABC1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147); BEST Arabidopsis thaliana protein match is: ABC1 family protein (TAIR:AT1G11390.1); Has 5829 Blast hits to 5801 proteins in 1080 species: Archae - 65; Bacteria - 2547; Metazoa - 332; Fungi - 269; Plants - 307; Viruses - 7; Other Eukaryotes - 2302 (source: NCBI BLink).  protein_id AT1G61640.2p  transcript_id AT1G61640.2  protein_id AT1G61640.2p  transcript_id AT1G61640.2  
At1g61640	chr1:022749037	0.0	C/22749037-22749053,22747527-22748835,22747178-22747441,22746934-22747089,22746629-22746748	AT1G61640.1  CDS  gene_syn T25B24.1, T25B24_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ABC1 family protein  note ABC1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ABC1 family protein (TAIR:AT1G11390.1); Has 6757 Blast hits to 6718 proteins in 1099 species: Archae - 67; Bacteria - 2595; Metazoa - 348; Fungi - 350; Plants - 321; Viruses - 14; Other Eukaryotes - 3062 (source: NCBI BLink).  protein_id AT1G61640.1p  transcript_id AT1G61640.1  protein_id AT1G61640.1p  transcript_id AT1G61640.1  
At1g61650	chr1:022750965	0.0	C/22750965-22751562	AT1G61650.1  pseudogenic_transcript  pseudo  gene_syn T13M11.22  note pseudogene, similar to chromomethylase-like protein, blastp match of 45% identity and 3.0e-24 P-value to GP|27529842|dbj|BAC53936.1||AB032538 chromomethylase-like protein {Nicotiana tabacum}  
At1g61660	chr1:022755849	0.0	C/22755849-22756171,22755320-22755728,22755116-22755223,22754964-22755029,22754769-22754834,22754603-22754674	AT1G61660.2  CDS  gene_syn T13M11.1, T13M11_1  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT4G05170.1); Has 1207 Blast hits to 769 proteins in 72 species: Archae - 0; Bacteria - 52; Metazoa - 307; Fungi - 39; Plants - 524; Viruses - 0; Other Eukaryotes - 285 (source: NCBI BLink).  protein_id AT1G61660.2p  transcript_id AT1G61660.2  protein_id AT1G61660.2p  transcript_id AT1G61660.2  
At1g61660	chr1:022755849	0.0	C/22755849-22756171,22755320-22755728,22755116-22755223,22754964-22755029,22754769-22754834,22754621-22754674,22754370-22754521,22754003-22754006	AT1G61660.1  CDS  gene_syn T13M11.1, T13M11_1  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: ethylene-responsive protein -related (TAIR:AT3G20640.1); Has 1231 Blast hits to 803 proteins in 74 species: Archae - 0; Bacteria - 54; Metazoa - 297; Fungi - 43; Plants - 548; Viruses - 0; Other Eukaryotes - 289 (source: NCBI BLink).  protein_id AT1G61660.1p  transcript_id AT1G61660.1  protein_id AT1G61660.1p  transcript_id AT1G61660.1  
At1g61667	chr1:022767674	0.0	W/22767674-22768088,22768214-22768269	AT1G61667.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54530.1); Has 234 Blast hits to 234 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 233; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G61667.1p  transcript_id AT1G61667.1  protein_id AT1G61667.1p  transcript_id AT1G61667.1  
At1g61670	chr1:022770132	0.0	W/22770132-22770358,22770444-22771377,22771617-22771712,22771814-22771950,22772111-22772258	AT1G61670.1  CDS  gene_syn T13M11.2, T13M11_2  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system, integral to membrane; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10980.1); Has 473 Blast hits to 471 proteins in 125 species: Archae - 0; Bacteria - 2; Metazoa - 242; Fungi - 99; Plants - 92; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT1G61670.1p  transcript_id AT1G61670.1  protein_id AT1G61670.1p  transcript_id AT1G61670.1  
At1g61680	chr1:022774484	0.0	C/22774484-22774687,22774163-22774409,22773689-22774073,22773365-22773583,22773156-22773294,22772810-22773058,22772455-22772721	AT1G61680.1  CDS  gene_syn ATTPS14, T13M11.3, T13M11_3, TERPENE SYNTHASE 14, TPS14  gene TPS14  go_component plastid|GO:0009536|12566586|IC  go_process monoterpene biosynthetic process|GO:0043693|12566586|IDA  go_function S-linalool synthase activity|GO:0034007|12566586|IDA  product TPS14 (TERPENE SYNTHASE 14); S-linalool synthase  note TERPENE SYNTHASE 14 (TPS14); FUNCTIONS IN: S-linalool synthase activity; INVOLVED IN: monoterpene biosynthetic process; LOCATED IN: plastid; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: lyase/ magnesium ion binding (TAIR:AT4G16730.1); Has 1086 Blast hits to 1073 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1082; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G61680.1p  transcript_id AT1G61680.1  protein_id AT1G61680.1p  transcript_id AT1G61680.1  
At1g61685	chr1:022778207	0.0	C/22778207-22778323	AT1G61685.1  pseudogenic_transcript  pseudo  function Encodes a defensin-like (DEFL) family protein.  
At1g61688	chr1:022781227	0.0	C/22781227-22781353,22780793-22780983	AT1G61688.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 10 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G61688.1p  transcript_id AT1G61688.1  protein_id AT1G61688.1p  transcript_id AT1G61688.1  
At1g61690	chr1:022786669	0.0	C/22786669-22786782,22786145-22786313,22782825-22786057	AT1G61690.1  CDS  gene_syn T13M11.5, T13M11_5  go_process signal transduction|GO:0007165|15358268|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product phosphoinositide binding  note phosphoinositide binding; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Zinc finger, FYVE-type (InterPro:IPR000306), Zinc finger, FYVE-related (InterPro:IPR017455), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: zinc finger (FYVE type) family protein (TAIR:AT1G20110.1); Has 9738 Blast hits to 7576 proteins in 471 species: Archae - 32; Bacteria - 506; Metazoa - 5364; Fungi - 1050; Plants - 463; Viruses - 12; Other Eukaryotes - 2311 (source: NCBI BLink).  protein_id AT1G61690.1p  transcript_id AT1G61690.1  protein_id AT1G61690.1p  transcript_id AT1G61690.1  
At1g61700	chr1:022787105	0.0	W/22787105-22787140,22787261-22787319,22787901-22787995,22788087-22788112	AT1G61700.1  CDS  gene_syn T13M11.6, T13M11_6  function Protein of unknown function that is homologous to the At1g11475 locus that encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V. Homologous to budding yeast RPB10.  go_process transcription|GO:0006350||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_component cellular_component|GO:0005575||ND  go_process transcription|GO:0006350||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product DNA-directed RNA polymerase II, putative (RPB10)  note DNA-directed RNA polymerase II, putative (RPB10); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RNA polymerases, N/8 Kd subunits (InterPro:IPR000268), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: NRPB10; DNA binding / DNA-directed RNA polymerase (TAIR:AT1G11475.1); Has 710 Blast hits to 710 proteins in 231 species: Archae - 167; Bacteria - 0; Metazoa - 123; Fungi - 120; Plants - 38; Viruses - 2; Other Eukaryotes - 260 (source: NCBI BLink).  protein_id AT1G61700.1p  transcript_id AT1G61700.1  protein_id AT1G61700.1p  transcript_id AT1G61700.1  
At1g61710	chr1:022790116	0.0	C/22790116-22790576,22789512-22789894,22788859-22789223	AT1G61710.1  CDS  gene_syn T13M11.7, T13M11_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT1G61840.1); Has 674 Blast hits to 352 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 671; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G61710.1p  transcript_id AT1G61710.1  protein_id AT1G61710.1p  transcript_id AT1G61710.1  
At1g61720	chr1:022792625	0.0	C/22792625-22792757,22792377-22792543,22792090-22792290,22791856-22792015,22791568-22791781,22791326-22791473	AT1G61720.1  CDS  gene_syn BAN, BANYULS, T13M11.8, T13M11_8  gene BAN  function Negative regulator of flavonoid biosynthesis, mutants accumulate flavonoid pigments in their seed coat, putative oxidoreductase. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium.  go_process negative regulation of flavonoid biosynthetic process|GO:0009964|9076994|IMP  go_function oxidoreductase activity|GO:0016491|9076994|ISS  product BAN (BANYULS); oxidoreductase  note BANYULS (BAN); FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: negative regulation of flavonoid biosynthetic process; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: C globular stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: DFR (DIHYDROFLAVONOL 4-REDUCTASE); dihydrokaempferol 4-reductase (TAIR:AT5G42800.1); Has 6679 Blast hits to 6671 proteins in 991 species: Archae - 67; Bacteria - 1931; Metazoa - 246; Fungi - 580; Plants - 1400; Viruses - 12; Other Eukaryotes - 2443 (source: NCBI BLink).  protein_id AT1G61720.1p  transcript_id AT1G61720.1  protein_id AT1G61720.1p  transcript_id AT1G61720.1  
At1g61730	chr1:022793447	0.0	C/22793447-22794577	AT1G61730.1  CDS  gene_syn T13M11.9, T13M11_9  go_component nucleolus|GO:0005730|15496452|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function transcription regulator activity|GO:0030528|12535344|TAS  product DNA-binding storekeeper protein-related  note DNA-binding storekeeper protein-related; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleolus, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: transcription regulator (TAIR:AT4G00390.1); Has 9029 Blast hits to 1959 proteins in 228 species: Archae - 8; Bacteria - 1489; Metazoa - 953; Fungi - 627; Plants - 217; Viruses - 41; Other Eukaryotes - 5694 (source: NCBI BLink).  protein_id AT1G61730.1p  transcript_id AT1G61730.1  protein_id AT1G61730.1p  transcript_id AT1G61730.1  
At1g61732	chr1:022795618	0.0	W/22795618-22795735	AT1G61732.1  miRNA  gene_syn MICRORNA776A, MIR776A  gene MIR776A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCUAAGUCUUCUAUUGAUGUU  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR776A (MICRORNA776A); miRNA  transcript_id AT1G61732.1  
At1g61740	chr1:022800256	0.0	C/22800256-22801020,22799007-22799153,22798758-22798913,22798365-22798673	AT1G61740.1  CDS  gene_syn T13M11.10, T13M11_10  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF81 (InterPro:IPR002781); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11540.1); Has 1813 Blast hits to 1686 proteins in 403 species: Archae - 72; Bacteria - 842; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 802 (source: NCBI BLink).  protein_id AT1G61740.1p  transcript_id AT1G61740.1  protein_id AT1G61740.1p  transcript_id AT1G61740.1  
At1g61750	chr1:022805475	0.0	C/22805475-22806318,22804613-22804794	AT1G61750.1  CDS  gene_syn T13M11.11, T13M11_11  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: protein kinase-related (TAIR:AT1G63600.1); Has 5451 Blast hits to 2391 proteins in 173 species: Archae - 4; Bacteria - 562; Metazoa - 1882; Fungi - 309; Plants - 1875; Viruses - 114; Other Eukaryotes - 705 (source: NCBI BLink).  protein_id AT1G61750.1p  transcript_id AT1G61750.1  protein_id AT1G61750.1p  transcript_id AT1G61750.1  
At1g61760	chr1:022807440	0.0	C/22807440-22808114	AT1G61760.1  CDS  gene_syn T13M11.12, T13M11_12  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product harpin-induced protein-related / HIN1-related / harpin-responsive protein-related  note harpin-induced protein-related / HIN1-related / harpin-responsive protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: inflorescence meristem, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: harpin-induced protein-related / HIN1-related / harpin-responsive protein-related (TAIR:AT4G05220.1); Has 569 Blast hits to 569 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 569; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G61760.1p  transcript_id AT1G61760.1  protein_id AT1G61760.1p  transcript_id AT1G61760.1  
At1g61770	chr1:022810220	0.0	W/22810220-22810338,22810422-22810484,22810582-22810648,22810860-22810919,22811043-22811093,22811186-22811266,22811614-22811726,22811818-22811935,22812036-22812162,22812267-22812370	AT1G61770.1  CDS  gene_syn T13M11.13, T13M11_13  function J domain protein.  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT5G18140.1); Has 15354 Blast hits to 15353 proteins in 1889 species: Archae - 109; Bacteria - 4899; Metazoa - 3482; Fungi - 1401; Plants - 1159; Viruses - 10; Other Eukaryotes - 4294 (source: NCBI BLink).  protein_id AT1G61770.1p  transcript_id AT1G61770.1  protein_id AT1G61770.1p  transcript_id AT1G61770.1  
At1g61780	chr1:022814001	0.0	C/22814001-22814016,22813609-22813726,22812998-22813095,22812822-22812886	AT1G61780.1  CDS  gene_syn T13M11.14, T13M11_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product postsynaptic protein-related  note postsynaptic protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 171 Blast hits to 169 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 102; Fungi - 30; Plants - 32; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G61780.1p  transcript_id AT1G61780.1  protein_id AT1G61780.1p  transcript_id AT1G61780.1  
At1g61790	chr1:022814390	0.0	W/22814390-22815430	AT1G61790.1  CDS  gene_syn T13M11.15, T13M11_15  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function oligosaccharide transmembrane transporter activity|GO:0015157||ISS  product OST3/OST6 family protein  note OST3/OST6 family protein; FUNCTIONS IN: oligosaccharide transmembrane transporter activity; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: OST3/OST6 (InterPro:IPR006844); BEST Arabidopsis thaliana protein match is: OST3/OST6 family protein (TAIR:AT1G11560.1); Has 268 Blast hits to 268 proteins in 97 species: Archae - 0; Bacteria - 0; Metazoa - 171; Fungi - 49; Plants - 34; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G61790.1p  transcript_id AT1G61790.1  protein_id AT1G61790.1p  transcript_id AT1G61790.1  
At1g61795	chr1:022819943	0.0	W/22819943-22820003,22820097-22820197,22820385-22820445,22820663-22820826	AT1G61795.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095); BEST Arabidopsis thaliana protein match is: RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10) (TAIR:AT4G04900.1); Has 94 Blast hits to 94 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G61795.1p  transcript_id AT1G61795.1  protein_id AT1G61795.1p  transcript_id AT1G61795.1  
At1g61800	chr1:022824527	0.0	W/22824527-22825018,22825409-22825634,22825727-22825949,22826114-22826327,22826448-22826459	AT1G61800.1  CDS  gene_syn GLUCOSE6-PHOSPHATE/PHOSPHATE TRANSPORTER 2, GPT2, T13M11.18, T13M11_18  gene GPT2  function glucose6-Phosphate/phosphate transporter 2  go_component plasma membrane|GO:0005886|17151019|IDA  go_process response to sucrose stimulus|GO:0009744|16463203|IEP  go_process response to glucose stimulus|GO:0009749|16463203|IEP  go_process hexose phosphate transport|GO:0015712||ISS  go_function glucose-6-phosphate transmembrane transporter activity|GO:0015152||ISS  go_function antiporter activity|GO:0015297||ISS  product GPT2; antiporter/ glucose-6-phosphate transmembrane transporter  note GPT2; FUNCTIONS IN: antiporter activity, glucose-6-phosphate transmembrane transporter activity; INVOLVED IN: hexose phosphate transport, response to sucrose stimulus, response to glucose stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Tpt phosphate/phosphoenolpyruvate translocator (InterPro:IPR004696), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: GPT1; antiporter/ glucose-6-phosphate transmembrane transporter (TAIR:AT5G54800.1); Has 1533 Blast hits to 1532 proteins in 214 species: Archae - 2; Bacteria - 20; Metazoa - 408; Fungi - 251; Plants - 692; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).  protein_id AT1G61800.1p  transcript_id AT1G61800.1  protein_id AT1G61800.1p  transcript_id AT1G61800.1  
At1g61810	chr1:022830035	0.0	W/22830035-22830190,22830289-22830358,22830485-22830543,22830662-22830737,22830878-22830885	AT1G61810.2  CDS  gene_syn BETA-GLUCOSIDASE 45, BGLU45, T13M11.19, T13M11_19  gene BGLU45  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU45 (BETA-GLUCOSIDASE 45); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA-GLUCOSIDASE 45 (BGLU45); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU46 (BETA GLUCOSIDASE 46); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G61820.1); Has 4644 Blast hits to 4552 proteins in 741 species: Archae - 23; Bacteria - 2914; Metazoa - 439; Fungi - 129; Plants - 680; Viruses - 0; Other Eukaryotes - 459 (source: NCBI BLink).  protein_id AT1G61810.2p  transcript_id AT1G61810.2  protein_id AT1G61810.2p  transcript_id AT1G61810.2  
At1g61810	chr1:022830035	0.0	W/22830035-22830190,22830289-22830358,22830485-22830543,22830662-22830737,22830911-22830985,22831094-22831181,22831281-22831533,22831605-22831720,22831834-22832092,22832192-22832294,22832379-22832487,22832615-22832813	AT1G61810.1  CDS  gene_syn BETA-GLUCOSIDASE 45, BGLU45, T13M11.19, T13M11_19  gene BGLU45  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU45 (BETA-GLUCOSIDASE 45); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA-GLUCOSIDASE 45 (BGLU45); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU46 (BETA GLUCOSIDASE 46); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G61820.1); Has 5761 Blast hits to 5532 proteins in 797 species: Archae - 100; Bacteria - 3147; Metazoa - 588; Fungi - 133; Plants - 846; Viruses - 0; Other Eukaryotes - 947 (source: NCBI BLink).  protein_id AT1G61810.1p  transcript_id AT1G61810.1  protein_id AT1G61810.1p  transcript_id AT1G61810.1  
At1g61820	chr1:022835452	0.0	W/22835452-22835598,22835684-22835753,22836102-22836160,22836275-22836350,22836532-22836606,22836717-22836804,22836878-22837130,22837221-22837336,22837431-22837689,22837800-22837902,22837997-22838105,22838249-22838444	AT1G61820.1  CDS  gene_syn BETA GLUCOSIDASE 46, BGLU46, F8K4.3, F8K4_3  gene BGLU46  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU46 (BETA GLUCOSIDASE 46); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 46 (BGLU46); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU45 (BETA-GLUCOSIDASE 45); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G61810.1); Has 5792 Blast hits to 5535 proteins in 796 species: Archae - 100; Bacteria - 3159; Metazoa - 610; Fungi - 133; Plants - 846; Viruses - 0; Other Eukaryotes - 944 (source: NCBI BLink).  protein_id AT1G61820.1p  transcript_id AT1G61820.1  protein_id AT1G61820.1p  transcript_id AT1G61820.1  
At1g61820	chr1:022836707	0.0	W/22836707-22836804,22836878-22837130,22837221-22837336,22837431-22837689,22837800-22837902,22837997-22838105,22838249-22838444	AT1G61820.3  CDS  gene_syn BETA GLUCOSIDASE 46, BGLU46, F8K4.3, F8K4_3  gene BGLU46  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU46 (BETA GLUCOSIDASE 46); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 46 (BGLU46); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU45 (BETA-GLUCOSIDASE 45); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G61810.1); Has 5387 Blast hits to 5208 proteins in 788 species: Archae - 96; Bacteria - 3064; Metazoa - 565; Fungi - 127; Plants - 805; Viruses - 0; Other Eukaryotes - 730 (source: NCBI BLink).  protein_id AT1G61820.3p  transcript_id AT1G61820.3  protein_id AT1G61820.3p  transcript_id AT1G61820.3  
At1g61830	chr1:022839992	0.0	W/22839992-22841860	AT1G61830.1  pseudogenic_transcript  pseudo  gene_syn F8K4.4, F8K4_4  note pseudogene, CHP-rich zinc finger protein, putative, similar to putative CHP-rich zinc finger protein GI:9293934 from (Arabidopsis thaliana)  
At1g61840	chr1:022847389	0.0	W/22847389-22849833	AT1G61840.1  CDS  gene_syn F8K4.5, F8K4_5  go_process intracellular signaling cascade|GO:0007242||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular signaling cascade; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT2G40050.1); Has 1556 Blast hits to 500 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 1532; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G61840.1p  transcript_id AT1G61840.1  protein_id AT1G61840.1p  transcript_id AT1G61840.1  
At1g61850	chr1:022856317	0.0	W/22856317-22856754,22856851-22856998,22857087-22857165,22857253-22857406,22857497-22857706,22857792-22858037,22858112-22858274,22858357-22858617,22858689-22858810,22859068-22859229,22859360-22859561,22859653-22859789,22859936-22860074,22860223-22860429,22860522-22861002,22861099-22861315,22861413-22861502,22861746-22862225	AT1G61850.1  CDS  gene_syn F8K4.6, F8K4_6  function Encodes a non-specific lipase that hydrolyzes phospholipids as well as galactolipids, at both sn-1 and sn-2 positions. Involved in basal jasmonic acid biosynthesis by releasing the precursor fatty acid from membrane lipids. Mutant plants were impacted in resistance to fungus B. cinerea.  go_component cellular_component|GO:0005575||ND  go_process response to fungus|GO:0009620|17475618|IMP  go_process jasmonic acid biosynthetic process|GO:0009695|17475618|IMP  go_function phospholipase activity|GO:0004620|17475618|IDA  go_function galactolipase activity|GO:0047714|17475618|IDA  product galactolipase/ phospholipase  note galactolipase/ phospholipase; FUNCTIONS IN: galactolipase activity, phospholipase activity; INVOLVED IN: response to fungus, jasmonic acid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Armadillo-like helical (InterPro:IPR011989), Leucine-rich repeat (InterPro:IPR001611), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT5G07910.1); Has 10703 Blast hits to 5593 proteins in 443 species: Archae - 38; Bacteria - 2228; Metazoa - 5701; Fungi - 581; Plants - 1041; Viruses - 0; Other Eukaryotes - 1114 (source: NCBI BLink).  protein_id AT1G61850.1p  transcript_id AT1G61850.1  protein_id AT1G61850.1p  transcript_id AT1G61850.1  
At1g61860	chr1:022864475	0.0	C/22864475-22864619,22864189-22864370,22863907-22864096,22863433-22863824,22863079-22863339	AT1G61860.1  CDS  gene_syn F8K4.7, F8K4_7  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G20530.1); Has 82949 Blast hits to 82042 proteins in 2916 species: Archae - 42; Bacteria - 7371; Metazoa - 36858; Fungi - 6348; Plants - 18423; Viruses - 305; Other Eukaryotes - 13602 (source: NCBI BLink).  protein_id AT1G61860.1p  transcript_id AT1G61860.1  protein_id AT1G61860.1p  transcript_id AT1G61860.1  
At1g61870	chr1:022865326	0.0	C/22865326-22866552	AT1G61870.1  CDS  gene_syn F8K4.8, F8K4_8, PPR336, pentatricopeptide repeat 336  gene PPR336  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  product PPR336 (pentatricopeptide repeat 336)  note pentatricopeptide repeat 336 (PPR336); LOCATED IN: mitochondrion, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G11630.1); Has 14567 Blast hits to 4457 proteins in 161 species: Archae - 4; Bacteria - 12; Metazoa - 280; Fungi - 232; Plants - 13581; Viruses - 0; Other Eukaryotes - 458 (source: NCBI BLink).  protein_id AT1G61870.1p  transcript_id AT1G61870.1  protein_id AT1G61870.1p  transcript_id AT1G61870.1  
At1g61880	chr1:022866758	0.0	C/22866758-22866829	AT1G61880.1  tRNA  gene_syn 51025.TRNA-TRP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Trp (anticodon: CCA)  transcript_id AT1G61880.1  
At1g61890	chr1:022870858	0.0	C/22870858-22871163,22869904-22870535,22869047-22869103,22868712-22868950,22868501-22868619,22868319-22868405,22868103-22868168	AT1G61890.1  CDS  gene_syn F8K4.9, F8K4_9  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G11670.1); Has 5339 Blast hits to 5312 proteins in 1076 species: Archae - 120; Bacteria - 3299; Metazoa - 123; Fungi - 208; Plants - 714; Viruses - 0; Other Eukaryotes - 875 (source: NCBI BLink).  protein_id AT1G61890.1p  transcript_id AT1G61890.1  protein_id AT1G61890.1p  transcript_id AT1G61890.1  
At1g61900	chr1:022884653	0.0	C/22884653-22884722,22884181-22884309,22883506-22884087,22883182-22883427,22883059-22883070,22882815-22882958,22882673-22882710,22882561-22882581	AT1G61900.2  CDS  gene_syn F8K4.10, F8K4_10  go_component plasma membrane|GO:0005886|17317660|IDA  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30700.1); Has 30 Blast hits to 30 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G61900.2p  transcript_id AT1G61900.2  protein_id AT1G61900.2p  transcript_id AT1G61900.2  
At1g61900	chr1:022884653	0.0	C/22884653-22884722,22884181-22884309,22883506-22884087,22883182-22883427,22883059-22883070,22882815-22882958,22882673-22882717,22882508-22882581	AT1G61900.1  CDS  gene_syn F8K4.10, F8K4_10  go_component plasma membrane|GO:0005886|17317660|IDA  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30700.1); Has 30 Blast hits to 30 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G61900.1p  transcript_id AT1G61900.1  protein_id AT1G61900.1p  transcript_id AT1G61900.1  
At1g61910	chr1:022887090	0.0	W/22887090-22887169	AT1G61910.1  tRNA  gene_syn 51025.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: TAG)  transcript_id AT1G61910.1  
At1g61920	chr1:022888457	0.0	W/22888457-22888495,22888517-22888768	AT1G61920.1  CDS  gene_syn F8K4.11, F8K4_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G61920.1p  transcript_id AT1G61920.1  protein_id AT1G61920.1p  transcript_id AT1G61920.1  
At1g61930	chr1:022893218	0.0	W/22893218-22893829	AT1G61930.1  CDS  gene_syn F8K4.12, F8K4_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF584 (InterPro:IPR007608); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11700.1); Has 192 Blast hits to 192 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 192; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G61930.1p  transcript_id AT1G61930.1  protein_id AT1G61930.1p  transcript_id AT1G61930.1  
At1g61940	chr1:022898393	0.0	C/22898393-22898575,22898202-22898313,22898078-22898111,22897813-22897998,22897687-22897768,22897399-22897599	AT1G61940.1  CDS  gene_syn AtTLP4, F8K4.13, F8K4_13, TUBBY LIKE PROTEIN 4  gene AtTLP4  function Member of TLP family  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product AtTLP4 (TUBBY LIKE PROTEIN 4); transcription factor  note TUBBY LIKE PROTEIN 4 (AtTLP4); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: AtTLP3 (TUBBY LIKE PROTEIN 3); phosphoric diester hydrolase/ transcription factor (TAIR:AT2G47900.2); Has 283 Blast hits to 248 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 283; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G61940.1p  transcript_id AT1G61940.1  protein_id AT1G61940.1p  transcript_id AT1G61940.1  
At1g61950	chr1:022899417	0.0	W/22899417-22899830,22899955-22900300,22900546-22900689,22900771-22900923,22901005-22901120,22901201-22901368,22901443-22901570,22901652-22901751,22901855-22901941	AT1G61950.1  CDS  gene_syn CPK19, F8K4.14, F8K4_14  gene CPK19  function member of Calcium Dependent Protein Kinase  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  go_function kinase activity|GO:0016301||ISS  product CPK19; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase  note CPK19; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CPK21; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT4G04720.1); Has 99517 Blast hits to 93326 proteins in 2717 species: Archae - 68; Bacteria - 7955; Metazoa - 42405; Fungi - 12761; Plants - 16031; Viruses - 445; Other Eukaryotes - 19852 (source: NCBI BLink).  protein_id AT1G61950.1p  transcript_id AT1G61950.1  protein_id AT1G61950.1p  transcript_id AT1G61950.1  
At1g61960	chr1:022902239	0.0	W/22902239-22903612	AT1G61960.1  CDS  gene_syn F8K4.15, F8K4_15  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial transcription termination factor-related / mTERF-related  note mitochondrial transcription termination factor-related / mTERF-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: mitochondrial transcription termination factor family protein / mTERF family protein (TAIR:AT1G62085.1); Has 552 Blast hits to 403 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 0; Plants - 514; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G61960.1p  transcript_id AT1G61960.1  protein_id AT1G61960.1p  transcript_id AT1G61960.1  
At1g61970	chr1:022904713	0.0	W/22904713-22905969	AT1G61970.1  CDS  gene_syn F8K4.16, F8K4_16  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial transcription termination factor-related / mTERF-related  note mitochondrial transcription termination factor-related / mTERF-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: mitochondrial transcription termination factor-related / mTERF-related (TAIR:AT1G61980.1); Has 409 Blast hits to 376 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 403; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G61970.1p  transcript_id AT1G61970.1  protein_id AT1G61970.1p  transcript_id AT1G61970.1  
At1g61980	chr1:022908162	0.0	W/22908162-22909418	AT1G61980.1  CDS  gene_syn F8K4.17, F8K4_17  go_component nucleus|GO:0005634|14617066|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process response to cold|GO:0009409|14617066|IEP  go_function molecular_function|GO:0003674||ND  product mitochondrial transcription termination factor-related / mTERF-related  note mitochondrial transcription termination factor-related / mTERF-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cold; LOCATED IN: mitochondrion, nucleus; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: mitochondrial transcription termination factor-related / mTERF-related (TAIR:AT1G61970.1); Has 378 Blast hits to 343 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 7; Plants - 366; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G61980.1p  transcript_id AT1G61980.1  protein_id AT1G61980.1p  transcript_id AT1G61980.1  
At1g61990	chr1:022911453	0.0	W/22911453-22912697	AT1G61990.1  CDS  gene_syn F8K4.18, F8K4_18  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial transcription termination factor-related / mTERF-related  note mitochondrial transcription termination factor-related / mTERF-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: mitochondrial transcription termination factor-related / mTERF-related (TAIR:AT1G61960.1); Has 369 Blast hits to 350 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 366; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G61990.1p  transcript_id AT1G61990.1  protein_id AT1G61990.1p  transcript_id AT1G61990.1  
At1g62000	chr1:022913491	0.0	W/22913491-22913937	AT1G62000.1  CDS  gene_syn F8K4.19, F8K4_19  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62080.1); Has 148 Blast hits to 41 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 4; Plants - 27; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G62000.1p  transcript_id AT1G62000.1  protein_id AT1G62000.1p  transcript_id AT1G62000.1  
At1g62010	chr1:022915886	0.0	W/22915886-22917133	AT1G62010.1  CDS  gene_syn F8K4.20, F8K4_20  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial transcription termination factor-related / mTERF-related  note mitochondrial transcription termination factor-related / mTERF-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: mitochondrial transcription termination factor-related / mTERF-related (TAIR:AT1G62120.1); Has 353 Blast hits to 335 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 1; Plants - 345; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G62010.1p  transcript_id AT1G62010.1  protein_id AT1G62010.1p  transcript_id AT1G62010.1  
At1g62020	chr1:022919814	0.0	W/22919814-22920021,22920126-22920620,22920781-22923728	AT1G62020.1  CDS  gene_syn F8K4.21, F8K4_21  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function structural molecule activity|GO:0005198||IEA  go_function protein binding|GO:0005515||IEA  go_component COPI vesicle coat|GO:0030126||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process ER to Golgi vesicle-mediated transport|GO:0006888||ISS  go_function transporter activity|GO:0005215||ISS  product coatomer protein complex, subunit alpha, putative  note coatomer protein complex, subunit alpha, putative; FUNCTIONS IN: protein binding, structural molecule activity, transporter activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPI vesicle coat, plasma membrane, CUL4 RING ubiquitin ligase complex, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Coatomer, WD associated region (InterPro:IPR006692), Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), WD40 repeat (InterPro:IPR001680), WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), Coatomer, alpha subunit (InterPro:IPR016391), Coatomer, alpha subunit, C-terminal (InterPro:IPR010714); BEST Arabidopsis thaliana protein match is: coatomer protein complex, subunit alpha, putative (TAIR:AT2G21390.1); Has 57996 Blast hits to 22179 proteins in 591 species: Archae - 44; Bacteria - 5747; Metazoa - 27691; Fungi - 10853; Plants - 5420; Viruses - 0; Other Eukaryotes - 8241 (source: NCBI BLink).  protein_id AT1G62020.1p  transcript_id AT1G62020.1  protein_id AT1G62020.1p  transcript_id AT1G62020.1  
At1g62030	chr1:022924309	0.0	C/22924309-22926540	AT1G62030.1  CDS  gene_syn F8K4.22, F8K4_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT4G02540.1); Has 1058 Blast hits to 487 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 1045; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G62030.1p  transcript_id AT1G62030.1  protein_id AT1G62030.1p  transcript_id AT1G62030.1  
At1g62035	chr1:022930089	0.0	C/22930089-22930204	AT1G62035.1  miRNA  gene_syn MICRORNA171C, MIR171C  gene MIR171C  function Encodes a microRNA that targets several SCL family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGAGCCGUGCCAAUAUCACG  product MIR171C (MICRORNA171C); miRNA  transcript_id AT1G62035.1  
At1g62040	chr1:022933216	0.0	W/22933216-22933252,22933453-22933508,22933595-22933647,22933891-22934009,22934159-22934253	AT1G62040.1  CDS  gene_syn ATG8C, F8K4.23, F8K4_23, autophagy 8c  gene ATG8C  go_process autophagy|GO:0006914||ISS  go_function microtubule binding|GO:0008017||ISS  product ATG8C (autophagy 8c); microtubule binding  note autophagy 8c (ATG8C); FUNCTIONS IN: microtubule binding; INVOLVED IN: autophagy; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: autophagy 8d (APG8d) (TAIR:AT2G05630.1); Has 1161 Blast hits to 1159 proteins in 200 species: Archae - 0; Bacteria - 0; Metazoa - 579; Fungi - 124; Plants - 171; Viruses - 3; Other Eukaryotes - 284 (source: NCBI BLink).  protein_id AT1G62040.1p  transcript_id AT1G62040.1  protein_id AT1G62040.1p  transcript_id AT1G62040.1  
At1g62045	chr1:022934905	0.0	C/22934905-22935108	AT1G62045.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT1G11740.1); Has 11 Blast hits to 11 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G62045.1p  transcript_id AT1G62045.1  protein_id AT1G62045.1p  transcript_id AT1G62045.1  
At1g62050	chr1:022937372	0.0	C/22937372-22938874,22936323-22936694	AT1G62050.1  CDS  go_component apoplast|GO:0048046|18538804|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT1G11740.1); Has 967 Blast hits to 722 proteins in 118 species: Archae - 0; Bacteria - 24; Metazoa - 556; Fungi - 45; Plants - 193; Viruses - 2; Other Eukaryotes - 147 (source: NCBI BLink).  protein_id AT1G62050.1p  transcript_id AT1G62050.1  protein_id AT1G62050.1p  transcript_id AT1G62050.1  
At1g62055	chr1:022940331	0.0	C/22940331-22940864	AT1G62055.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At1g62060	chr1:022941795	0.0	C/22941795-22942247	AT1G62060.1  CDS  gene_syn F19K23.1, F19K23_1  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62220.1); Has 391 Blast hits to 116 proteins in 30 species: Archae - 6; Bacteria - 289; Metazoa - 30; Fungi - 16; Plants - 36; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G62060.1p  transcript_id AT1G62060.1  protein_id AT1G62060.1p  transcript_id AT1G62060.1  
At1g62070	chr1:022943632	0.0	W/22943632-22943997	AT1G62070.1  CDS  gene_syn F19K23.2, F19K23_2  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 8 Blast hits to 8 proteins in 4 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 2; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G62070.1p  transcript_id AT1G62070.1  protein_id AT1G62070.1p  transcript_id AT1G62070.1  
At1g62075	chr1:022944721	0.0	C/22944721-22945242	AT1G62075.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.3e-28 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea)  
At1g62080	chr1:022946451	0.0	C/22946451-22946903	AT1G62080.1  CDS  gene_syn F19K23.3, F19K23_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62000.1); Has 87 Blast hits to 83 proteins in 27 species: Archae - 0; Bacteria - 28; Metazoa - 13; Fungi - 2; Plants - 26; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G62080.1p  transcript_id AT1G62080.1  protein_id AT1G62080.1p  transcript_id AT1G62080.1  
At1g62085	chr1:022948757	0.0	C/22948757-22950142	AT1G62085.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial transcription termination factor family protein / mTERF family protein  note mitochondrial transcription termination factor family protein / mTERF family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: F mature embryo stage, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: mitochondrial transcription termination factor family protein / mTERF family protein (TAIR:AT1G62110.1); Has 541 Blast hits to 403 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 30; Fungi - 0; Plants - 502; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G62085.1p  transcript_id AT1G62085.1  protein_id AT1G62085.1p  transcript_id AT1G62085.1  
At1g62090	chr1:022950681	0.0	C/22950681-22955118	AT1G62090.1  pseudogenic_transcript  pseudo  gene_syn F19K23.4, F19K23_4  note pseudogene, protein kinase family, similar to light repressible receptor protein kinase (LRRPK) (Arabidopsis thaliana) GI:1321686; contains Pfam profiles PF02536: mTERF, PF00069: Protein kinase domain, PF00560: Leucine Rich Repeat; blastp match of 38% identity and 1.7e-162 P-value to GP|9837280|gb|AAG00510.1||AF285172 leaf senescence-associated receptor-like protein kinase {Phaseolus vulgaris}  
At1g62095	chr1:022955926	0.0	C/22955926-22956483	AT1G62095.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G11820; hydrolase, hydrolyzing O-glycosyl compounds  
At1g62110	chr1:022958094	0.0	C/22958094-22959482	AT1G62110.1  CDS  gene_syn F19K23.28, F19K23_28  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial transcription termination factor family protein / mTERF family protein  note mitochondrial transcription termination factor family protein / mTERF family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: mitochondrial transcription termination factor family protein / mTERF family protein (TAIR:AT1G62085.1); Has 539 Blast hits to 421 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 55; Fungi - 0; Plants - 476; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G62110.1p  transcript_id AT1G62110.1  protein_id AT1G62110.1p  transcript_id AT1G62110.1  
At1g62120	chr1:022960326	0.0	C/22960326-22961639	AT1G62120.1  CDS  gene_syn F19K23.6, F19K23_6  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial transcription termination factor-related / mTERF-related  note mitochondrial transcription termination factor-related / mTERF-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: mitochondrial transcription termination factor family protein / mTERF family protein (TAIR:AT1G62085.1); Has 415 Blast hits to 372 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 404; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G62120.1p  transcript_id AT1G62120.1  protein_id AT1G62120.1p  transcript_id AT1G62120.1  
At1g62130	chr1:022968789	0.0	C/22968789-22968920,22968622-22968694,22968420-22968520,22968218-22968334,22968015-22968131,22967619-22967864,22967406-22967530,22967010-22967137,22966836-22966927,22966506-22966646,22966334-22966431,22965871-22966019,22965718-22965788,22965473-22965646,22965319-22965375,22965139-22965228,22964540-22964615,22964361-22964454,22964217-22964268,22963945-22964115,22963570-22963680,22963400-22963483,22963156-22963316,22962932-22963070,22962770-22962829,22962566-22962670,22962365-22962478	AT1G62130.1  CDS  gene_syn F19K23.7, F19K23_7  go_component chloroplast|GO:0009507||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process biological_process|GO:0008150||ND  go_function ATPase activity|GO:0016887||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), SMAD/FHA domain (InterPro:IPR008984); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT4G24860.1); Has 19669 Blast hits to 18144 proteins in 1716 species: Archae - 856; Bacteria - 5501; Metazoa - 3830; Fungi - 2097; Plants - 1393; Viruses - 15; Other Eukaryotes - 5977 (source: NCBI BLink).  protein_id AT1G62130.1p  transcript_id AT1G62130.1  protein_id AT1G62130.1p  transcript_id AT1G62130.1  
At1g62150	chr1:022970198	0.0	C/22970198-22971589	AT1G62150.1  CDS  gene_syn F19K23.9, F19K23_9  go_function molecular_function|GO:0003674||ND  product mitochondrial transcription termination factor-related / mTERF-related  note mitochondrial transcription termination factor-related / mTERF-related; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: mitochondrial transcription termination factor family protein / mTERF family protein (TAIR:AT1G62085.1); Has 429 Blast hits to 366 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 418; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G62150.1p  transcript_id AT1G62150.1  protein_id AT1G62150.1p  transcript_id AT1G62150.1  
At1g62160	chr1:022972352	0.0	W/22972352-22972524,22972814-22973303	AT1G62160.1  CDS  gene_syn F19K23.34, F19K23_34  go_function serine-type endopeptidase inhibitor activity|GO:0004867||IEA  product serine-type endopeptidase inhibitor  note serine-type endopeptidase inhibitor; FUNCTIONS IN: serine-type endopeptidase inhibitor activity; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Protease inhibitor I4, serpin, plant (InterPro:IPR015554), Protease inhibitor I4, serpin (InterPro:IPR000215); BEST Arabidopsis thaliana protein match is: serpin family protein / serine protease inhibitor family protein (TAIR:AT1G62170.1).  protein_id AT1G62160.1p  transcript_id AT1G62160.1  protein_id AT1G62160.1p  transcript_id AT1G62160.1  
At1g62170	chr1:022973876	0.0	W/22973876-22974460,22974747-22975463	AT1G62170.1  CDS  gene_syn F19K23.10, F19K23_10  go_function serine-type endopeptidase inhibitor activity|GO:0004867||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function serine-type endopeptidase inhibitor activity|GO:0004867||ISS  product serpin family protein / serine protease inhibitor family protein  note serpin family protein / serine protease inhibitor family protein; FUNCTIONS IN: serine-type endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protease inhibitor I4, serpin, plant (InterPro:IPR015554), Protease inhibitor I4, serpin (InterPro:IPR000215); BEST Arabidopsis thaliana protein match is: serpin family protein / serine protease inhibitor family protein (TAIR:AT2G14540.1); Has 4564 Blast hits to 4538 proteins in 321 species: Archae - 50; Bacteria - 213; Metazoa - 3503; Fungi - 1; Plants - 223; Viruses - 413; Other Eukaryotes - 161 (source: NCBI BLink).  protein_id AT1G62170.1p  transcript_id AT1G62170.1  protein_id AT1G62170.1p  transcript_id AT1G62170.1  
At1g62180	chr1:022977384	0.0	C/22977384-22977465,22977114-22977251,22976900-22977029,22975794-22976808	AT1G62180.1  CDS  gene_syn 3 -PHOSPHOADENOSINE-5 -PHOSPHOSULFATE (PAPS) REDUCTASE HOMOLOG 43, 5 ADENYLYLPHOSPHOSULFATE REDUCTASE 2, ADENOSINE-5 -PHOSPHOSULFATE REDUCTASE, APR2, APS REDUCTASE, APSR, ATAPR2, F19K23.11, F19K23_11, PRH, PRH43  gene APR2  function encodes a adenosine 5 -phosphosulfate reductase, involved in sulfate assimilation. Is a major effect locus for natural variation of shoot sulfate content in Arabidopsis.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid|GO:0009534|19259774|IDA  go_component chloroplast stroma|GO:0009570|19259774|IDA  go_process sulfate assimilation|GO:0000103|8917600|IGI  go_process sulfate assimilation|GO:0000103|9653199|IDA  go_process sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)|GO:0019379|8917599|TAS  go_function phosphoadenylyl-sulfate reductase (thioredoxin) activity|GO:0004604|8917599|IDA  go_function phosphoadenylyl-sulfate reductase (thioredoxin) activity|GO:0004604|8917599|IMP  go_function adenylyl-sulfate reductase activity|GO:0009973|9653199|IDA  product APR2 (5 ADENYLYLPHOSPHOSULFATE REDUCTASE 2); adenylyl-sulfate reductase/ phosphoadenylyl-sulfate reductase (thioredoxin)  note 5 ADENYLYLPHOSPHOSULFATE REDUCTASE 2 (APR2); FUNCTIONS IN: adenylyl-sulfate reductase activity, phosphoadenylyl-sulfate reductase (thioredoxin) activity; INVOLVED IN: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin), sulfate assimilation; LOCATED IN: chloroplast stroma, chloroplast, chloroplast thylakoid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Thioredoxin-independent 5&apos;-adenylylsulphate reductase (InterPro:IPR004508), Thioredoxin fold (InterPro:IPR012335), Phosphoadenosine phosphosulphate reductase (InterPro:IPR002500), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: APR1 (APS REDUCTASE 1); adenylyl-sulfate reductase (TAIR:AT4G04610.1); Has 3741 Blast hits to 3349 proteins in 1026 species: Archae - 84; Bacteria - 1540; Metazoa - 955; Fungi - 321; Plants - 317; Viruses - 0; Other Eukaryotes - 524 (source: NCBI BLink).  protein_id AT1G62180.1p  transcript_id AT1G62180.1  protein_id AT1G62180.1p  transcript_id AT1G62180.1  
At1g62181	chr1:022977712	0.0	W/22977712-22977813	AT1G62181.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G62181.1p  transcript_id AT1G62181.1  protein_id AT1G62181.1p  transcript_id AT1G62181.1  
At1g62190	chr1:022980976	0.0	W/22980976-22981863	AT1G62190.1  CDS  gene_syn F19K23.12, F19K23_12  go_component chloroplast|GO:0009507||IEA  go_process post-translational protein modification|GO:0043687||IEA  go_process regulation of protein metabolic process|GO:0051246||IEA  go_function small conjugating protein ligase activity|GO:0019787||IEA  product small conjugating protein ligase  note small conjugating protein ligase; FUNCTIONS IN: small conjugating protein ligase activity; INVOLVED IN: regulation of protein metabolic process, post-translational protein modification; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: small conjugating protein ligase (TAIR:AT4G27030.1); Has 180 Blast hits to 180 proteins in 75 species: Archae - 0; Bacteria - 19; Metazoa - 108; Fungi - 0; Plants - 24; Viruses - 3; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G62190.1p  transcript_id AT1G62190.1  protein_id AT1G62190.1p  transcript_id AT1G62190.1  
At1g62200	chr1:022984269	0.0	C/22984269-22984334,22983985-22984108,22983684-22983901,22983033-22983598,22982147-22982945	AT1G62200.1  CDS  gene_syn F19K23.13, F19K23_13  go_component membrane|GO:0016020||IEA  go_process oligopeptide transport|GO:0006857||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region, conserved site (InterPro:IPR018456), TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: PTR2 (PEPTIDE TRANSPORTER 2); dipeptide transporter/ high affinity oligopeptide transporter/ nitrate transmembrane transporter/ peptide transporter/ transporter/ tripeptide transporter (TAIR:AT2G02040.1); Has 4799 Blast hits to 4477 proteins in 805 species: Archae - 0; Bacteria - 2076; Metazoa - 699; Fungi - 312; Plants - 1141; Viruses - 0; Other Eukaryotes - 571 (source: NCBI BLink).  protein_id AT1G62200.1p  transcript_id AT1G62200.1  protein_id AT1G62200.1p  transcript_id AT1G62200.1  
At1g62210	chr1:022986096	0.0	W/22986096-22986626	AT1G62210.1  CDS  gene_syn F19K23.14, F19K23_14  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 16 Blast hits to 14 proteins in 5 species: Archae - 0; Bacteria - 2; Metazoa - 7; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G62210.1p  transcript_id AT1G62210.1  protein_id AT1G62210.1p  transcript_id AT1G62210.1  
At1g62214	chr1:022987483	0.0	C/22987483-22987938	AT1G62214.1  pseudogenic_transcript  pseudo  function unknown pseudogene  
At1g62220	chr1:022988252	0.0	W/22988252-22988713	AT1G62220.1  CDS  gene_syn F19K23.15, F19K23_15  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62060.1); Has 90 Blast hits to 81 proteins in 27 species: Archae - 0; Bacteria - 40; Metazoa - 12; Fungi - 6; Plants - 27; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G62220.1p  transcript_id AT1G62220.1  protein_id AT1G62220.1p  transcript_id AT1G62220.1  
At1g62225	chr1:022989850	0.0	C/22989850-22990281	AT1G62225.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62060.1); Has 31 Blast hits to 31 proteins in 4 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 2; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G62225.1p  transcript_id AT1G62225.1  protein_id AT1G62225.1p  transcript_id AT1G62225.1  
At1g62230	chr1:022990975	0.0	C/22990975-22991679	AT1G62230.1  mRNA_TE_gene  pseudo  gene_syn F19K23.25  note Transposable element gene, pseudogene, hypothetical protein  
At1g62240	chr1:022994640	0.0	W/22994640-22995323	AT1G62240.1  CDS  gene_syn F19K23.23, F19K23_23  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 165366 Blast hits to 44665 proteins in 1942 species: Archae - 379; Bacteria - 44084; Metazoa - 54509; Fungi - 11923; Plants - 15318; Viruses - 2340; Other Eukaryotes - 36813 (source: NCBI BLink).  protein_id AT1G62240.1p  transcript_id AT1G62240.1  protein_id AT1G62240.1p  transcript_id AT1G62240.1  
At1g62250	chr1:022996794	0.0	C/22996794-22997003,22996572-22996697,22996324-22996482,22996054-22996230	AT1G62250.2  CDS  gene_syn F19K23.17, F19K23_17  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 14 Blast hits to 14 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G62250.2p  transcript_id AT1G62250.2  protein_id AT1G62250.2p  transcript_id AT1G62250.2  
At1g62250	chr1:022996794	0.0	C/22996794-22997003,22996572-22996697,22996324-22996482,22996058-22996230,22995814-22995919,22995615-22995644	AT1G62250.1  CDS  gene_syn F19K23.17, F19K23_17  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G62250.1p  transcript_id AT1G62250.1  protein_id AT1G62250.1p  transcript_id AT1G62250.1  
At1g62260	chr1:022997826	0.0	C/22997826-22999796	AT1G62260.1  CDS  gene_syn F19K23.18, F19K23_18  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G02750.1); Has 16836 Blast hits to 5175 proteins in 152 species: Archae - 1; Bacteria - 10; Metazoa - 123; Fungi - 113; Plants - 16247; Viruses - 0; Other Eukaryotes - 342 (source: NCBI BLink).  protein_id AT1G62260.1p  transcript_id AT1G62260.1  protein_id AT1G62260.1p  transcript_id AT1G62260.1  
At1g62262	chr1:023000664	0.0	C/23000664-23001491,23000318-23000587	AT1G62262.1  CDS  gene_syn SLAC1 HOMOLOGUE 4, SLAH4  gene SLAH4  function Predicted to encode a protein with similarity to the SLAC1 protein involved in ion homeostasis in guard cells.  go_component integral to membrane|GO:0016021||IEA  go_process cellular ion homeostasis|GO:0006873|18305482|ISS  go_function molecular_function|GO:0003674||ND  product SLAH4 (SLAC1 HOMOLOGUE 4)  note SLAC1 HOMOLOGUE 4 (SLAH4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cellular ion homeostasis; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: C4-dicarboxylate transporter/malic acid transport protein (InterPro:IPR004695); BEST Arabidopsis thaliana protein match is: SLAH1 (SLAC1 HOMOLOGUE 1); transporter (TAIR:AT1G62280.1); Has 435 Blast hits to 434 proteins in 174 species: Archae - 2; Bacteria - 314; Metazoa - 0; Fungi - 8; Plants - 85; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G62262.1p  transcript_id AT1G62262.1  protein_id AT1G62262.1p  transcript_id AT1G62262.1  
At1g62270	chr1:023004499	0.0	W/23004499-23005650	AT1G62270.1  CDS  gene_syn F19K23.19, F19K23_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G17480.1); Has 1017 Blast hits to 992 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1015; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G62270.1p  transcript_id AT1G62270.1  protein_id AT1G62270.1p  transcript_id AT1G62270.1  
At1g62280	chr1:023007689	0.0	C/23007689-23008540,23007309-23007614	AT1G62280.1  CDS  gene_syn F19K23.20, F19K23_20, SLAC1 HOMOLOGUE 1, SLAH1  gene SLAH1  function Encodes a protein with ten predicted transmembrane helices. The SLAH1 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. Although it is not expressed in guard cells, it can complement a slac1-2 mutant suggesting that it performs a similar function. SLAH1:GFP localizes to the plasma membrane.  go_component plasma membrane|GO:0005886|18305482|IDA  go_component integral to membrane|GO:0016021||ISS  go_process cellular ion homeostasis|GO:0006873|18305482|IMP  go_function transporter activity|GO:0005215||ISS  product SLAH1 (SLAC1 HOMOLOGUE 1); transporter  note SLAC1 HOMOLOGUE 1 (SLAH1); FUNCTIONS IN: transporter activity; INVOLVED IN: cellular ion homeostasis; LOCATED IN: integral to membrane, plasma membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: C4-dicarboxylate transporter/malic acid transport protein (InterPro:IPR004695); BEST Arabidopsis thaliana protein match is: SLAH4 (SLAC1 HOMOLOGUE 4) (TAIR:AT1G62262.1); Has 431 Blast hits to 430 proteins in 170 species: Archae - 2; Bacteria - 313; Metazoa - 0; Fungi - 2; Plants - 85; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G62280.1p  transcript_id AT1G62280.1  protein_id AT1G62280.1p  transcript_id AT1G62280.1  
At1g62290	chr1:023012313	0.0	C/23012313-23012681,23012179-23012239,23011851-23012058,23011577-23011745,23011458-23011497,23011276-23011340,23011068-23011181,23010904-23010968,23010657-23010813,23010452-23010571,23010279-23010367,23010107-23010191	AT1G62290.1  CDS  gene_syn F19K23.21, F19K23_21  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_process proteolysis|GO:0006508||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis, lipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, seedling growth, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Saposin-like (InterPro:IPR011001), Peptidase aspartic, catalytic (InterPro:IPR009007), Saposin-like type B, 1 (InterPro:IPR007856), Saposin-like type B, 2 (InterPro:IPR008138), Saposin B (InterPro:IPR008139), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT1G11910.1); Has 5754 Blast hits to 3941 proteins in 342 species: Archae - 0; Bacteria - 4; Metazoa - 3397; Fungi - 1194; Plants - 356; Viruses - 0; Other Eukaryotes - 803 (source: NCBI BLink).  protein_id AT1G62290.1p  transcript_id AT1G62290.1  protein_id AT1G62290.1p  transcript_id AT1G62290.1  
At1g62290	chr1:023012313	0.0	C/23012313-23012681,23012179-23012239,23011851-23012058,23011577-23011745,23011458-23011497,23011276-23011340,23011068-23011181,23010904-23010968,23010657-23010813,23010452-23010571,23010279-23010367,23010107-23010191	AT1G62290.2  CDS  gene_syn F19K23.21, F19K23_21  go_component vacuole|GO:0005773|15539469|IDA  go_process proteolysis|GO:0006508||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis, lipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, seedling growth, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Saposin-like (InterPro:IPR011001), Peptidase aspartic, catalytic (InterPro:IPR009007), Saposin-like type B, 1 (InterPro:IPR007856), Saposin-like type B, 2 (InterPro:IPR008138), Saposin B (InterPro:IPR008139), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT1G11910.1); Has 5754 Blast hits to 3941 proteins in 342 species: Archae - 0; Bacteria - 4; Metazoa - 3397; Fungi - 1194; Plants - 356; Viruses - 0; Other Eukaryotes - 803 (source: NCBI BLink).  protein_id AT1G62290.2p  transcript_id AT1G62290.2  protein_id AT1G62290.2p  transcript_id AT1G62290.2  
At1g62300	chr1:023018790	0.0	C/23018790-23019155,23018483-23018584,23018242-23018388,23017838-23018152,23017626-23017739,23016887-23017504	AT1G62300.1  CDS  gene_syn ATWRKY6, F19K23.22, F19K23_22, WRKY6  gene WRKY6  function transcription factor WRKY6 (WRKY6)  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to chitin|GO:0010200|17722694|IEP  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY6; transcription factor  note WRKY6; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to chitin, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY31; transcription factor (TAIR:AT4G22070.1); Has 2281 Blast hits to 1983 proteins in 190 species: Archae - 0; Bacteria - 16; Metazoa - 105; Fungi - 31; Plants - 2021; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT1G62300.1p  transcript_id AT1G62300.1  protein_id AT1G62300.1p  transcript_id AT1G62300.1  
At1g62301	chr1:023020515	0.0	C/23020515-23020685	AT1G62301.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G62301.1p  transcript_id AT1G62301.1  protein_id AT1G62301.1p  transcript_id AT1G62301.1  
At1g62305	chr1:023028917	0.0	C/23028917-23029189,23028727-23028843,23028542-23028642,23028187-23028265,23027916-23027996,23027714-23027755,23027520-23027576,23027269-23027415,23026989-23027156	AT1G62305.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF266, plant (InterPro:IPR004949); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11940.1); Has 322 Blast hits to 322 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 305; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G62305.2p  transcript_id AT1G62305.2  protein_id AT1G62305.2p  transcript_id AT1G62305.2  
At1g62305	chr1:023028917	0.0	C/23028917-23029189,23028727-23028843,23028542-23028642,23028386-23028457,23028187-23028265,23027916-23027996,23027714-23027755,23027520-23027576,23027269-23027415,23026989-23027156	AT1G62305.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF266, plant (InterPro:IPR004949); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11940.1); Has 342 Blast hits to 342 proteins in 16 species: Archae - 0; Bacteria - 9; Metazoa - 0; Fungi - 0; Plants - 305; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT1G62305.1p  transcript_id AT1G62305.1  protein_id AT1G62305.1p  transcript_id AT1G62305.1  
At1g62310	chr1:023038586	0.0	C/23038586-23039301,23038404-23038503,23038194-23038326,23038059-23038122,23036954-23037986,23036567-23036872,23036425-23036497,23036267-23036352,23036039-23036179	AT1G62310.1  CDS  gene_syn F24O1.3, F24O1_3  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function transcription factor activity|GO:0003700||ISS  product transcription factor jumonji (jmjC) domain-containing protein  note transcription factor jumonji (jmjC) domain-containing protein; FUNCTIONS IN: protein binding, transcription factor activity, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, RING-type (InterPro:IPR001841), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT1G11950.1); Has 554 Blast hits to 519 proteins in 75 species: Archae - 0; Bacteria - 2; Metazoa - 329; Fungi - 16; Plants - 186; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G62310.1p  transcript_id AT1G62310.1  protein_id AT1G62310.1p  transcript_id AT1G62310.1  
At1g62320	chr1:023044542	0.0	C/23044542-23044855,23044292-23044447,23044064-23044199,23043866-23043967,23043670-23043783,23043515-23043595,23043091-23043431,23042765-23043010,23042358-23042682,23042057-23042269,23041668-23041949	AT1G62320.1  CDS  gene_syn F24O1.4, F24O1_4  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product early-responsive to dehydration protein-related / ERD protein-related  note early-responsive to dehydration protein-related / ERD protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11960.1); Has 930 Blast hits to 820 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 453; Plants - 257; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT1G62320.1p  transcript_id AT1G62320.1  protein_id AT1G62320.1p  transcript_id AT1G62320.1  
At1g62330	chr1:023046965	0.0	W/23046965-23047426,23047822-23047914,23047997-23048096,23048190-23048251,23048343-23048431,23048540-23048660,23048750-23048893,23048968-23049305,23049395-23049635,23049745-23050053	AT1G62330.1  CDS  gene_syn F24O1.5, F24O1_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11990.1); Has 433 Blast hits to 420 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 433; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G62330.1p  transcript_id AT1G62330.1  protein_id AT1G62330.1p  transcript_id AT1G62330.1  
At1g62333	chr1:023050466	0.0	W/23050466-23050678	AT1G62333.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 67144 Blast hits to 21756 proteins in 1112 species: Archae - 101; Bacteria - 10830; Metazoa - 22820; Fungi - 5505; Plants - 12510; Viruses - 2646; Other Eukaryotes - 12732 (source: NCBI BLink).  protein_id AT1G62333.1p  transcript_id AT1G62333.1  protein_id AT1G62333.1p  transcript_id AT1G62333.1  
At1g62340	chr1:023055454	0.0	C/23055454-23055656,23055096-23055240,23054352-23054764,23053845-23053940,23053662-23053731,23053296-23053578,23052603-23052946,23052001-23052268,23051647-23051919,23051123-23051526	AT1G62340.1  CDS  gene_syn ABNORMAL LEAF-SHAPE, ABNORMAL LEAF-SHAPE 1, ALE, ALE1, F24O1.36, F24O1_36  gene ALE1  function Subtilisin-like serine protease required for epidermal surface formation in embryos and juvenile plants  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process proteolysis|GO:0006508||ISS  go_process cuticle development|GO:0042335|11731449|IMP  go_function serine-type endopeptidase activity|GO:0004252|11731449|ISS  product ALE1 (ABNORMAL LEAF-SHAPE 1); serine-type endopeptidase  note ABNORMAL LEAF-SHAPE 1 (ALE1); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis, cuticle development; LOCATED IN: endomembrane system, cell wall, membrane; EXPRESSED IN: embryo, endosperm; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8A, DUF1034 C-terminal (InterPro:IPR010435), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: SLP3; serine-type peptidase (TAIR:AT2G19170.1); Has 3986 Blast hits to 3498 proteins in 631 species: Archae - 110; Bacteria - 2311; Metazoa - 20; Fungi - 187; Plants - 876; Viruses - 0; Other Eukaryotes - 482 (source: NCBI BLink).  protein_id AT1G62340.1p  transcript_id AT1G62340.1  protein_id AT1G62340.1p  transcript_id AT1G62340.1  
At1g62350	chr1:023056653	0.0	W/23056653-23056820,23057513-23057935	AT1G62350.1  CDS  gene_syn F24O1.37, F24O1_37  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: shoot apex; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G46870.1); Has 136 Blast hits to 136 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G62350.1p  transcript_id AT1G62350.1  protein_id AT1G62350.1p  transcript_id AT1G62350.1  
At1g62355	chr1:023058034	0.0	W/23058034-23058156	AT1G62355.1  miRNA  gene_syn MICRORNA413, MIR413  gene MIR413  function Encodes a microRNA. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence:ATAGTTTCTCTTGTTCTGCAC  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR413 (MICRORNA413); miRNA  transcript_id AT1G62355.1  
At1g62360	chr1:023061294	0.0	C/23061294-23061722,23060578-23060833,23059634-23059887,23058796-23059005	AT1G62360.1  CDS  gene_syn BUM, BUM1, BUMBERSHOOT, BUMBERSHOOT 1, F24O1.38, F24O1_38, HOMEOBOX PROTEIN SHOOTMERISTEMLESS, SHL, SHOOT MERISTEMLESS, SHOOTLESS, STM, WALDMEISTER, WALDMEISTER 1, WAM, WAM1  gene STM  function Class I knotted-like homeodomain protein that is required for shoot apical meristem (SAM) formation during embryogenesis and for SAM function throughout the lifetime of the plant. Functions by preventing incorporation of cells in the meristem center into differentiating organ primordia.  go_component nucleus|GO:0005634|16513846|IDA  go_process cytokinin biosynthetic process|GO:0009691|16139212|TAS  go_process regulation of meristem organization|GO:0009934|12070094|IMP  go_process stem cell maintenance|GO:0019827|12068101|TAS  go_process carpel development|GO:0048440|17461793|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product STM (SHOOT MERISTEMLESS); transcription factor  note SHOOT MERISTEMLESS (STM); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of meristem organization, stem cell maintenance, cytokinin biosynthetic process, carpel development; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: KNOX2 (InterPro:IPR005541), ELK (InterPro:IPR005539), Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), KNOX1 (InterPro:IPR005540), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA); transcription factor (TAIR:AT4G08150.1); Has 5145 Blast hits to 5143 proteins in 296 species: Archae - 0; Bacteria - 0; Metazoa - 1474; Fungi - 183; Plants - 3397; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).  protein_id AT1G62360.1p  transcript_id AT1G62360.1  protein_id AT1G62360.1p  transcript_id AT1G62360.1  
At1g62370	chr1:023072575	0.0	W/23072575-23073189	AT1G62370.1  CDS  gene_syn F24O1.39, F24O1_39  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G22250.1); Has 426 Blast hits to 426 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 194; Fungi - 17; Plants - 142; Viruses - 11; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT1G62370.1p  transcript_id AT1G62370.1  protein_id AT1G62370.1p  transcript_id AT1G62370.1  
At1g62380	chr1:023082340	0.0	W/23082340-23082453,23082551-23082777,23083254-23083587,23083781-23084068	AT1G62380.1  CDS  gene_syn ACC OXIDASE, ACC OXIDASE 2, ACO2, ATACO2, F24O1.40, F24O1_40  gene ACO2  function Encodes a protein similar to 1-aminocyclopropane-1-carboxylic oxidase (ACC oxidase). Expression of the AtACO2 transcripts is affected by ethylene.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process ethylene biosynthetic process|GO:0009693|16311726|TAS  go_process detection of ethylene stimulus|GO:0009727|10409511|IDA  go_function 1-aminocyclopropane-1-carboxylate oxidase activity|GO:0009815|10409511|ISS  product ACO2 (ACC OXIDASE 2); 1-aminocyclopropane-1-carboxylate oxidase  note ACC OXIDASE 2 (ACO2); FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate oxidase activity; INVOLVED IN: response to salt stress, detection of ethylene stimulus, ethylene biosynthetic process; LOCATED IN: cell wall, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative (TAIR:AT1G12010.1); Has 5875 Blast hits to 5855 proteins in 679 species: Archae - 0; Bacteria - 701; Metazoa - 112; Fungi - 655; Plants - 3085; Viruses - 0; Other Eukaryotes - 1322 (source: NCBI BLink).  protein_id AT1G62380.1p  transcript_id AT1G62380.1  protein_id AT1G62380.1p  transcript_id AT1G62380.1  
At1g62390	chr1:023084632	0.0	C/23084632-23086887	AT1G62390.1  CDS  go_function binding|GO:0005488||IEA  product octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein  note octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT2G25290.2); Has 3845 Blast hits to 3336 proteins in 247 species: Archae - 10; Bacteria - 181; Metazoa - 1919; Fungi - 585; Plants - 529; Viruses - 2; Other Eukaryotes - 619 (source: NCBI BLink).  protein_id AT1G62390.1p  transcript_id AT1G62390.1  protein_id AT1G62390.1p  transcript_id AT1G62390.1  
At1g62400	chr1:023090243	0.0	W/23090243-23090554,23090719-23091174,23091260-23091529	AT1G62400.1  CDS  gene_syn F24O1.13, F24O1_13, HT1, high leaf temperature 1  gene HT1  go_process regulation of stomatal movement|GO:0010119|16518390|IMP  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301|16518390|IDA  go_function kinase activity|GO:0016301||ISS  product HT1 (high leaf temperature 1); kinase/ protein serine/threonine/tyrosine kinase  note high leaf temperature 1 (HT1); FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: regulation of stomatal movement; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G58950.1); Has 96980 Blast hits to 95363 proteins in 3767 species: Archae - 63; Bacteria - 8135; Metazoa - 43717; Fungi - 7974; Plants - 19220; Viruses - 507; Other Eukaryotes - 17364 (source: NCBI BLink).  protein_id AT1G62400.1p  transcript_id AT1G62400.1  protein_id AT1G62400.1p  transcript_id AT1G62400.1  
At1g62410	chr1:023092915	0.0	W/23092915-23093298,23093404-23093619,23093798-23093869	AT1G62410.1  CDS  gene_syn F24O1.14, F24O1_14  go_component endomembrane system|GO:0012505||IEA  go_process RNA metabolic process|GO:0016070||IEA  go_process translation|GO:0006412||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product MIF4G domain-containing protein  note MIF4G domain-containing protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translation, RNA metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), MIF4G-like, type 3 (InterPro:IPR003890), MIF4-like, type 1/2/3 (InterPro:IPR016021); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 4F, putative / eIF-4F, putative (TAIR:AT5G57870.2); Has 699 Blast hits to 699 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 380; Fungi - 112; Plants - 81; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink).  protein_id AT1G62410.1p  transcript_id AT1G62410.1  protein_id AT1G62410.1p  transcript_id AT1G62410.1  
At1g62421	chr1:023099484	0.0	W/23099484-23099798	AT1G62421.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G62421.1p  transcript_id AT1G62421.1  protein_id AT1G62421.1p  transcript_id AT1G62421.1  
At1g62422	chr1:023100419	0.0	C/23100419-23100985	AT1G62422.1  CDS  product unknown protein  note unknown protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12020.1); Has 46 Blast hits to 45 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G62422.1p  transcript_id AT1G62422.1  protein_id AT1G62422.1p  transcript_id AT1G62422.1  
At1g62420	chr1:023104235	0.0	C/23104235-23104604,23102937-23103418	AT1G62420.1  CDS  gene_syn F24O1.44, F24O1_44  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12030.1); Has 217 Blast hits to 217 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G62420.1p  transcript_id AT1G62420.1  protein_id AT1G62420.1p  transcript_id AT1G62420.1  
At1g62430	chr1:023108849	0.0	C/23108849-23108923,23108517-23108770,23108264-23108415,23107982-23108123,23107621-23107777,23107463-23107510,23107291-23107377,23106833-23106961,23106680-23106736,23106446-23106529,23106274-23106354	AT1G62430.1  CDS  gene_syn ATCDS1, F24O1.17, F24O1_17  gene ATCDS1  function Encodes a CDP-diacylglycerol synthase, involved in phospholipid biosynthesis.  go_component membrane|GO:0016020|9085581|ISS  go_process phospholipid biosynthetic process|GO:0008654|9085581|TAS  go_function phosphatidate cytidylyltransferase activity|GO:0004605|9085581|IDA  go_function phosphatidate cytidylyltransferase activity|GO:0004605|9085581|ISS  go_function phosphatidate cytidylyltransferase activity|GO:0004605||ISS  product ATCDS1; phosphatidate cytidylyltransferase  note ATCDS1; FUNCTIONS IN: phosphatidate cytidylyltransferase activity; INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidate cytidylyltransferase (InterPro:IPR000374), Phosphatidate cytidylyltransferase, eukaryota (InterPro:IPR016720); BEST Arabidopsis thaliana protein match is: phosphatidate cytidylyltransferase, putative / CDP-diglyceride synthetase, putative (TAIR:AT4G22340.3); Has 4492 Blast hits to 4485 proteins in 1354 species: Archae - 0; Bacteria - 2544; Metazoa - 161; Fungi - 89; Plants - 81; Viruses - 0; Other Eukaryotes - 1617 (source: NCBI BLink).  protein_id AT1G62430.1p  transcript_id AT1G62430.1  protein_id AT1G62430.1p  transcript_id AT1G62430.1  
At1g62440	chr1:023111818	0.0	W/23111818-23111847,23112029-23112193,23113008-23115293	AT1G62440.1  CDS  gene_syn F24O1.19, LEUCINE-RICH REPEAT/EXTENSIN 2, LRX2  gene LRX2  function encodes a paralog of LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1) which acts synergistically with LRX1 in root hair cell morphogenesis.  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process cell morphogenesis involved in differentiation|GO:0000904|12834403|IGI  go_function structural constituent of cell wall|GO:0005199|12644681|ISS  go_function protein binding|GO:0005515|12644681|ISS  product LRX2 (LEUCINE-RICH REPEAT/EXTENSIN 2); protein binding / structural constituent of cell wall  note LEUCINE-RICH REPEAT/EXTENSIN 2 (LRX2); FUNCTIONS IN: structural constituent of cell wall, protein binding; INVOLVED IN: cell morphogenesis involved in differentiation; LOCATED IN: plant-type cell wall; EXPRESSED IN: trichoblast, root hair, root; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Extensin-like region (InterPro:IPR006706), Extensin-like protein (InterPro:IPR003883); BEST Arabidopsis thaliana protein match is: LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1); histidine phosphotransfer kinase/ protein binding / structural constituent of cell wall (TAIR:AT1G12040.1); Has 317654 Blast hits to 85898 proteins in 2256 species: Archae - 781; Bacteria - 48216; Metazoa - 121846; Fungi - 40167; Plants - 62922; Viruses - 7042; Other Eukaryotes - 36680 (source: NCBI BLink).  protein_id AT1G62440.1p  transcript_id AT1G62440.1  protein_id AT1G62440.1p  transcript_id AT1G62440.1  
At1g62450	chr1:023117188	0.0	C/23117188-23117370,23116884-23116950,23116371-23116595,23116151-23116275,23115958-23116029	AT1G62450.1  CDS  gene_syn F24O1.20  go_component cytoplasm|GO:0005737||IEA  go_function Rho GDP-dissociation inhibitor activity|GO:0005094||IEA  go_component cytoplasm|GO:0005737||ISS  go_process biological_process|GO:0008150||ND  go_function Rho GDP-dissociation inhibitor activity|GO:0005094||ISS  product Rho GDP-dissociation inhibitor family protein  note Rho GDP-dissociation inhibitor family protein; FUNCTIONS IN: Rho GDP-dissociation inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cytoplasm; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), RHO protein GDP dissociation inhibitor (InterPro:IPR000406); BEST Arabidopsis thaliana protein match is: Rho GDP-dissociation inhibitor family protein (TAIR:AT1G12070.1); Has 496 Blast hits to 496 proteins in 128 species: Archae - 0; Bacteria - 0; Metazoa - 284; Fungi - 108; Plants - 65; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT1G62450.1p  transcript_id AT1G62450.1  protein_id AT1G62450.1p  transcript_id AT1G62450.1  
At1g62460	chr1:023118657	0.0	W/23118657-23123058	AT1G62460.1  mRNA_TE_gene  pseudo  gene_syn T3P18.3, T3P18_3  note Transposable element gene, copia-like retrotransposon family, has a 6.0e-38 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)  
At1g62480	chr1:023128799	0.0	W/23128799-23128813,23129105-23129548	AT1G62480.1  CDS  gene_syn T3P18.4, T3P18_4  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cellular_component|GO:0005575||ND  product vacuolar calcium-binding protein-related  note vacuolar calcium-binding protein-related; INVOLVED IN: response to cadmium ion, response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 21240 Blast hits to 8486 proteins in 745 species: Archae - 107; Bacteria - 2872; Metazoa - 7762; Fungi - 1837; Plants - 540; Viruses - 183; Other Eukaryotes - 7939 (source: NCBI BLink).  protein_id AT1G62480.1p  transcript_id AT1G62480.1  protein_id AT1G62480.1p  transcript_id AT1G62480.1  
At1g62490	chr1:023131089	0.0	C/23131089-23131533,23130405-23130964	AT1G62490.1  CDS  gene_syn T3P18.5, T3P18_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial transcription termination factor-related / mTERF-related  note mitochondrial transcription termination factor-related / mTERF-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: mitochondrial transcription termination factor-related / mTERF-related (TAIR:AT1G61960.1); Has 106 Blast hits to 94 proteins in 7 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G62490.1p  transcript_id AT1G62490.1  protein_id AT1G62490.1p  transcript_id AT1G62490.1  
At1g62500	chr1:023132181	0.0	W/23132181-23133074	AT1G62500.1  CDS  gene_syn T3P18.6, T3P18_6  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT2G10940.2); Has 51335 Blast hits to 24732 proteins in 1265 species: Archae - 151; Bacteria - 7964; Metazoa - 24434; Fungi - 4209; Plants - 7715; Viruses - 1442; Other Eukaryotes - 5420 (source: NCBI BLink).  protein_id AT1G62500.1p  transcript_id AT1G62500.1  protein_id AT1G62500.1p  transcript_id AT1G62500.1  
At1g62510	chr1:023136632	0.0	C/23136632-23137081	AT1G62510.1  CDS  gene_syn T3P18.7, T3P18_7  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, leaf whorl, cotyledon, leaf; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: ELP (EXTENSIN-LIKE PROTEIN); lipid binding (TAIR:AT1G12090.1); Has 25091 Blast hits to 3451 proteins in 510 species: Archae - 46; Bacteria - 7201; Metazoa - 1760; Fungi - 624; Plants - 3955; Viruses - 1242; Other Eukaryotes - 10263 (source: NCBI BLink).  protein_id AT1G62510.1p  transcript_id AT1G62510.1  protein_id AT1G62510.1p  transcript_id AT1G62510.1  
At1g62520	chr1:023144506	0.0	W/23144506-23145348	AT1G62520.1  CDS  gene_syn T3P18.8, T3P18_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22560.1); Has 110 Blast hits to 110 proteins in 15 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 4; Plants - 103; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G62520.1p  transcript_id AT1G62520.1  protein_id AT1G62520.1p  transcript_id AT1G62520.1  
At1g62530	chr1:023147273	0.0	C/23147273-23147386,23146332-23147156	AT1G62530.1  CDS  gene_syn T3P18.9, T3P18_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF863, plant (InterPro:IPR008581); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12120.1); Has 51 Blast hits to 47 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G62530.1p  transcript_id AT1G62530.1  protein_id AT1G62530.1p  transcript_id AT1G62530.1  
At1g62530	chr1:023147273	0.0	C/23147273-23147386,23146332-23147156	AT1G62530.2  CDS  gene_syn T3P18.9, T3P18_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF863, plant (InterPro:IPR008581); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12120.1); Has 51 Blast hits to 47 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G62530.2p  transcript_id AT1G62530.2  protein_id AT1G62530.2p  transcript_id AT1G62530.2  
At1g62540	chr1:023151870	0.0	W/23151870-23152413,23153477-23153547,23153988-23154143,23154270-23154352,23154453-23154588,23154664-23154837,23155218-23155427	AT1G62540.1  CDS  gene_syn FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 2, FMO GS-OX2, T3P18.10, T3P18_10  gene FMO GS-OX2  function belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates  go_process glucosinolate biosynthetic process|GO:0019761|18799661|IMP  go_function monooxygenase activity|GO:0004497||ISS  go_function flavin-containing monooxygenase activity|GO:0004499|18799661|IDA  go_function 3-methylthiopropyl glucosinolate S-oxygenase activity|GO:0080102|18799661|IMP  go_function 4-methylthiopropyl glucosinolate S-oxygenase activity|GO:0080103|18799661|IDA  go_function 4-methylthiopropyl glucosinolate S-oxygenase activity|GO:0080103|18799661|IMP  go_function 5-methylthiopropyl glucosinolate S-oxygenase activity|GO:0080104|18799661|IMP  go_function 7-methylthiopropyl glucosinolate S-oxygenase activity|GO:0080106|18799661|IMP  go_function 8-methylthiopropyl glucosinolate S-oxygenase activity|GO:0080107|18799661|IDA  go_function 8-methylthiopropyl glucosinolate S-oxygenase activity|GO:0080107|18799661|IMP  product FMO GS-OX2 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 2); 3-methylthiopropyl glucosinolate S-oxygenase/ 4-methylthiopropyl glucosinolate S-oxygenase/ 5-methylthiopropyl glucosinolate S-oxygenase/ 7-methylthiopropyl glucosinolate S-oxygenase/ 8-methylthiopropyl glucosinolate S-oxygenase/ flavin-containing monooxygenase/ monooxygenase  note FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 2 (FMO GS-OX2); FUNCTIONS IN: in 7 functions; INVOLVED IN: glucosinolate biosynthetic process; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960); BEST Arabidopsis thaliana protein match is: FMO GS-OX3 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 3); 3-methylthiopropyl glucosinolate S-oxygenase/ 4-methylthiopropyl glucosinolate S-oxygenase/ 5-methylthiopropyl glucosinolate S-oxygenase/ 6-methylthiopropyl glucosinolate S-oxygenase/ 7-methylthiopropyl glucosinolate S-oxygenase/ 8-methylthiopropyl glucosinolate S-oxygenase/ flavin-containing monooxygenase/ monooxygenase (TAIR:AT1G62560.1); Has 8437 Blast hits to 8200 proteins in 867 species: Archae - 36; Bacteria - 3593; Metazoa - 923; Fungi - 953; Plants - 453; Viruses - 0; Other Eukaryotes - 2479 (source: NCBI BLink).  protein_id AT1G62540.1p  transcript_id AT1G62540.1  protein_id AT1G62540.1p  transcript_id AT1G62540.1  
At1g62550	chr1:023156931	0.0	W/23156931-23157297	AT1G62550.1  mRNA_TE_gene  pseudo  gene_syn T3P18.11  note Transposable element gene, pseudogene, hypothetical protein, similar to non-LTR retroelement reverse transcriptase-like protein GI:9758853 from (Arabidopsis thaliana)  
At1g62560	chr1:023159912	0.0	W/23159912-23160458,23160548-23160618,23161093-23161248,23161370-23161452,23161544-23161679,23161769-23161942,23162330-23162551	AT1G62560.1  CDS  gene_syn FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 3, FMO GS-OX3, T3P18.12, T3P18_12  gene FMO GS-OX3  function belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates  go_process glucosinolate biosynthetic process|GO:0019761|18799661|IMP  go_function monooxygenase activity|GO:0004497||ISS  go_function flavin-containing monooxygenase activity|GO:0004499|18799661|IDA  go_function 3-methylthiopropyl glucosinolate S-oxygenase activity|GO:0080102|18799661|IMP  go_function 4-methylthiopropyl glucosinolate S-oxygenase activity|GO:0080103|18799661|IDA  go_function 4-methylthiopropyl glucosinolate S-oxygenase activity|GO:0080103|18799661|IMP  go_function 5-methylthiopropyl glucosinolate S-oxygenase activity|GO:0080104|18799661|IMP  go_function 6-methylthiopropyl glucosinolate S-oxygenase activity|GO:0080105|18799661|IMP  go_function 7-methylthiopropyl glucosinolate S-oxygenase activity|GO:0080106|18799661|IMP  go_function 8-methylthiopropyl glucosinolate S-oxygenase activity|GO:0080107|18799661|IDA  go_function 8-methylthiopropyl glucosinolate S-oxygenase activity|GO:0080107|18799661|IMP  product FMO GS-OX3 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 3); 3-methylthiopropyl glucosinolate S-oxygenase/ 4-methylthiopropyl glucosinolate S-oxygenase/ 5-methylthiopropyl glucosinolate S-oxygenase/ 6-methylthiopropyl glucosinolate S-oxygenase/ 7-methylthiopropyl glucosinolate S-oxygenase/ 8-methylthiopropyl glucosinolate S-oxygenase/ flavin-containing monooxygenase/ monooxygenase  note FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 3 (FMO GS-OX3); FUNCTIONS IN: in 8 functions; INVOLVED IN: glucosinolate biosynthetic process; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960); BEST Arabidopsis thaliana protein match is: FMO GS-OX2 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 2); 3-methylthiopropyl glucosinolate S-oxygenase/ 4-methylthiopropyl glucosinolate S-oxygenase/ 5-methylthiopropyl glucosinolate S-oxygenase/ 7-methylthiopropyl glucosinolate S-oxygenase/ 8-methylthiopropyl glucosinolate S-oxygenase/ flavin-containing monooxygenase/ monooxygenase (TAIR:AT1G62540.1); Has 10512 Blast hits to 10155 proteins in 1138 species: Archae - 62; Bacteria - 4769; Metazoa - 982; Fungi - 910; Plants - 445; Viruses - 0; Other Eukaryotes - 3344 (source: NCBI BLink).  protein_id AT1G62560.1p  transcript_id AT1G62560.1  protein_id AT1G62560.1p  transcript_id AT1G62560.1  
At1g62570	chr1:023169207	0.0	W/23169207-23169750,23169870-23169940,23170611-23170766,23170873-23170955,23171054-23171189,23171297-23171470,23171562-23171783	AT1G62570.1  CDS  gene_syn FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 4, FMO GS-OX4, T3P18.13, T3P18_13  gene FMO GS-OX4  function belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates  go_process glucosinolate biosynthetic process|GO:0019761|18799661|IMP  go_function monooxygenase activity|GO:0004497||ISS  go_function flavin-containing monooxygenase activity|GO:0004499|18799661|IDA  go_function 4-methylthiopropyl glucosinolate S-oxygenase activity|GO:0080103|18799661|IDA  go_function 8-methylthiopropyl glucosinolate S-oxygenase activity|GO:0080107|18799661|IDA  product FMO GS-OX4 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 4); 4-methylthiopropyl glucosinolate S-oxygenase/ 8-methylthiopropyl glucosinolate S-oxygenase/ flavin-containing monooxygenase/ monooxygenase  note FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 4 (FMO GS-OX4); FUNCTIONS IN: 4-methylthiopropyl glucosinolate S-oxygenase activity, monooxygenase activity, 8-methylthiopropyl glucosinolate S-oxygenase activity, flavin-containing monooxygenase activity; INVOLVED IN: glucosinolate biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960); BEST Arabidopsis thaliana protein match is: FMO GS-OX2 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 2); 3-methylthiopropyl glucosinolate S-oxygenase/ 4-methylthiopropyl glucosinolate S-oxygenase/ 5-methylthiopropyl glucosinolate S-oxygenase/ 7-methylthiopropyl glucosinolate S-oxygenase/ 8-methylthiopropyl glucosinolate S-oxygenase/ flavin-containing monooxygenase/ monooxygenase (TAIR:AT1G62540.1); Has 9028 Blast hits to 8657 proteins in 878 species: Archae - 14; Bacteria - 3508; Metazoa - 1037; Fungi - 911; Plants - 453; Viruses - 0; Other Eukaryotes - 3105 (source: NCBI BLink).  protein_id AT1G62570.1p  transcript_id AT1G62570.1  protein_id AT1G62570.1p  transcript_id AT1G62570.1  
At1g62580	chr1:023173333	0.0	W/23173333-23173921,23175684-23175754,23175827-23175979,23176062-23176144,23176217-23176352,23176380-23176619,23176710-23176931	AT1G62580.1  CDS  gene_syn T3P18.14, T3P18_14  go_component intrinsic to endoplasmic reticulum membrane|GO:0031227||IEA  go_function flavin-containing monooxygenase activity|GO:0004499||IEA  go_function FAD binding|GO:0050660||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_process biological_process|GO:0008150||ND  go_function monooxygenase activity|GO:0004497||ISS  product flavin-containing monooxygenase family protein / FMO family protein  note flavin-containing monooxygenase family protein / FMO family protein; FUNCTIONS IN: NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: intrinsic to endoplasmic reticulum membrane; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Dimethylaniline monooxygenase, N-oxide-forming (InterPro:IPR012143); BEST Arabidopsis thaliana protein match is: FAD binding / NADP or NADPH binding / electron carrier/ flavin-containing monooxygenase/ monooxygenase (TAIR:AT1G63340.1); Has 8079 Blast hits to 7827 proteins in 911 species: Archae - 42; Bacteria - 3448; Metazoa - 964; Fungi - 712; Plants - 400; Viruses - 0; Other Eukaryotes - 2513 (source: NCBI BLink).  protein_id AT1G62580.1p  transcript_id AT1G62580.1  protein_id AT1G62580.1p  transcript_id AT1G62580.1  
At1g62590	chr1:023177294	0.0	C/23177294-23179198	AT1G62590.1  CDS  gene_syn T3P18.15, T3P18_15  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G63330.1); Has 28002 Blast hits to 6281 proteins in 189 species: Archae - 3; Bacteria - 24; Metazoa - 1068; Fungi - 819; Plants - 24478; Viruses - 0; Other Eukaryotes - 1610 (source: NCBI BLink).  protein_id AT1G62590.1p  transcript_id AT1G62590.1  protein_id AT1G62590.1p  transcript_id AT1G62590.1  
At1g62600	chr1:023179542	0.0	W/23179542-23180103,23180182-23180252,23180330-23180482,23180570-23180652,23180743-23180878,23180971-23181144,23181232-23181411	AT1G62600.1  CDS  gene_syn T3P18.16, T3P18_16  go_component vacuole|GO:0005773|15539469|IDA  go_function flavin-containing monooxygenase activity|GO:0004499||IEA  go_function FAD binding|GO:0050660||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_process biological_process|GO:0008150||ND  go_function monooxygenase activity|GO:0004497||ISS  product flavin-containing monooxygenase family protein / FMO family protein  note flavin-containing monooxygenase family protein / FMO family protein; FUNCTIONS IN: NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960); BEST Arabidopsis thaliana protein match is: flavin-containing monooxygenase family protein / FMO family protein (TAIR:AT1G62620.1); Has 8846 Blast hits to 8478 proteins in 928 species: Archae - 35; Bacteria - 3635; Metazoa - 1030; Fungi - 886; Plants - 455; Viruses - 0; Other Eukaryotes - 2805 (source: NCBI BLink).  protein_id AT1G62600.1p  transcript_id AT1G62600.1  protein_id AT1G62600.1p  transcript_id AT1G62600.1  
At1g62620	chr1:023182678	0.0	W/23182678-23183233,23183669-23183739,23183811-23183963,23184037-23184119,23184211-23184346,23184419-23184592,23184685-23184864	AT1G62620.1  CDS  gene_syn T3P18.18, T3P18_18  go_function flavin-containing monooxygenase activity|GO:0004499||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function FAD binding|GO:0050660||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function monooxygenase activity|GO:0004497||ISS  product flavin-containing monooxygenase family protein / FMO family protein  note flavin-containing monooxygenase family protein / FMO family protein; FUNCTIONS IN: electron carrier activity, NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Adrenodoxin reductase (InterPro:IPR000759); BEST Arabidopsis thaliana protein match is: flavin-containing monooxygenase family protein / FMO family protein (TAIR:AT1G63370.1); Has 10830 Blast hits to 10486 proteins in 1121 species: Archae - 76; Bacteria - 4968; Metazoa - 1015; Fungi - 957; Plants - 449; Viruses - 0; Other Eukaryotes - 3365 (source: NCBI BLink).  protein_id AT1G62620.1p  transcript_id AT1G62620.1  protein_id AT1G62620.1p  transcript_id AT1G62620.1  
At1g62610	chr1:023182685	0.0	C/23182685-23182690,23181531-23182355	AT1G62610.2  CDS  gene_syn T3P18.17, T3P18_17  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: binding / catalytic/ oxidoreductase (TAIR:AT1G63380.1); Has 85976 Blast hits to 85824 proteins in 2330 species: Archae - 484; Bacteria - 45986; Metazoa - 6586; Fungi - 4421; Plants - 1856; Viruses - 2; Other Eukaryotes - 26641 (source: NCBI BLink).  protein_id AT1G62610.2p  transcript_id AT1G62610.2  protein_id AT1G62610.2p  transcript_id AT1G62610.2  
At1g62610	chr1:023182685	0.0	C/23182685-23182690,23181531-23182358	AT1G62610.1  CDS  gene_syn T3P18.17, T3P18_17  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: binding / catalytic/ oxidoreductase (TAIR:AT1G63380.1); Has 85981 Blast hits to 85829 proteins in 2330 species: Archae - 484; Bacteria - 45984; Metazoa - 6586; Fungi - 4423; Plants - 1856; Viruses - 2; Other Eukaryotes - 26646 (source: NCBI BLink).  protein_id AT1G62610.1p  transcript_id AT1G62610.1  protein_id AT1G62610.1p  transcript_id AT1G62610.1  
At1g62610	chr1:023182685	0.0	C/23182685-23182690,23181531-23182361	AT1G62610.3  CDS  gene_syn T3P18.17, T3P18_17  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: binding / catalytic/ oxidoreductase (TAIR:AT1G63380.1); Has 85983 Blast hits to 85831 proteins in 2330 species: Archae - 484; Bacteria - 45984; Metazoa - 6586; Fungi - 4423; Plants - 1858; Viruses - 2; Other Eukaryotes - 26646 (source: NCBI BLink).  protein_id AT1G62610.3p  transcript_id AT1G62610.3  protein_id AT1G62610.3p  transcript_id AT1G62610.3  
At1g62630	chr1:023185912	0.0	W/23185912-23188593	AT1G62630.1  CDS  gene_syn T3P18.19, T3P18_19  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative  note disease resistance protein (CC-NBS-LRR class), putative; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT1G63360.1); Has 11279 Blast hits to 10196 proteins in 460 species: Archae - 18; Bacteria - 644; Metazoa - 1999; Fungi - 113; Plants - 8289; Viruses - 6; Other Eukaryotes - 210 (source: NCBI BLink).  protein_id AT1G62630.1p  transcript_id AT1G62630.1  protein_id AT1G62630.1p  transcript_id AT1G62630.1  
At1g62640	chr1:023192502	0.0	W/23192502-23192692,23192944-23193092,23193177-23193313,23193403-23193508,23193590-23193708,23193903-23193967,23194061-23194286,23194516-23194737	AT1G62640.1  CDS  gene_syn 3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE III, KAS III, T3P18.20, T3P18_20  gene KAS III  function 3-ketoacyl-acyl carrier protein synthase III (KAS III)  go_component chloroplast|GO:0009507|18431481|IDA  go_process fatty acid biosynthetic process|GO:0006633||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function 3-oxoacyl-[acyl-carrier-protein] synthase activity|GO:0004315||IEA  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component chloroplast|GO:0009507||ISS  go_process fatty acid biosynthetic process|GO:0006633||ISS  go_function 3-oxoacyl-[acyl-carrier-protein] synthase activity|GO:0004315||ISS  product KAS III (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE III); 3-oxoacyl-[acyl-carrier-protein] synthase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups  note 3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE III (KAS III); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, 3-oxoacyl-[acyl-carrier-protein] synthase activity, catalytic activity; INVOLVED IN: metabolic process, fatty acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III (InterPro:IPR013751), Beta-ketoacyl-acyl carrier protein synthase III (FabH) (InterPro:IPR004655); Has 7923 Blast hits to 7922 proteins in 1629 species: Archae - 119; Bacteria - 4293; Metazoa - 4; Fungi - 2; Plants - 1301; Viruses - 0; Other Eukaryotes - 2204 (source: NCBI BLink).  protein_id AT1G62640.1p  transcript_id AT1G62640.1  protein_id AT1G62640.1p  transcript_id AT1G62640.1  
At1g62640	chr1:023192502	0.0	W/23192502-23192692,23192944-23193092,23193177-23193313,23193403-23193508,23193590-23193708,23193903-23193967,23194061-23194286,23194516-23194737	AT1G62640.2  CDS  gene_syn 3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE III, KAS III, T3P18.20, T3P18_20  gene KAS III  function 3-ketoacyl-acyl carrier protein synthase III (KAS III)  go_component chloroplast|GO:0009507|18431481|IDA  go_process fatty acid biosynthetic process|GO:0006633||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function 3-oxoacyl-[acyl-carrier-protein] synthase activity|GO:0004315||IEA  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component chloroplast|GO:0009507||ISS  go_process fatty acid biosynthetic process|GO:0006633||ISS  go_function 3-oxoacyl-[acyl-carrier-protein] synthase activity|GO:0004315||ISS  product KAS III (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE III); 3-oxoacyl-[acyl-carrier-protein] synthase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups  note 3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE III (KAS III); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, 3-oxoacyl-[acyl-carrier-protein] synthase activity, catalytic activity; INVOLVED IN: metabolic process, fatty acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III (InterPro:IPR013751), Beta-ketoacyl-acyl carrier protein synthase III (FabH) (InterPro:IPR004655); Has 7923 Blast hits to 7922 proteins in 1629 species: Archae - 119; Bacteria - 4293; Metazoa - 4; Fungi - 2; Plants - 1301; Viruses - 0; Other Eukaryotes - 2204 (source: NCBI BLink).  protein_id AT1G62640.2p  transcript_id AT1G62640.2  protein_id AT1G62640.2p  transcript_id AT1G62640.2  
At1g62650	chr1:023195353	0.0	W/23195353-23195721	AT1G62650.1  pseudogenic_transcript  pseudo  gene_syn F23N19.26  note pseudogene, similar to Flavonol sulfotransferase-like (EC 2.8.2.-)., similar to steroid sulfotransferase 2 GB:AAC63112 GI:3420006 from (Brassica napus); blastp match of 34% identity and 1.1e-12 P-value to SP|P52838|FSTL_FLABI Flavonol sulfotransferase-like (EC 2.8.2.-). {Flaveria bidentis}  
At1g62660	chr1:023199949	0.0	W/23199949-23200306,23200643-23200651,23201432-23201676,23201915-23202532,23202628-23203037,23203123-23203210,23203297-23203515	AT1G62660.1  CDS  gene_syn F23N19.3  go_component vacuole|GO:0005773|15539469|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process sucrose catabolic process, using beta-fructofuranosidase|GO:0019575||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar  note beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 32 (InterPro:IPR001362), Glycoside hydrolase, family 32, active site (InterPro:IPR018053), Glycosyl hydrolases family 32, N-terminal (InterPro:IPR013148), Glycosyl hydrolase family 32, C-terminal (InterPro:IPR013189), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: ATBETAFRUCT4; beta-fructofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G12240.1); Has 2186 Blast hits to 2167 proteins in 635 species: Archae - 4; Bacteria - 1174; Metazoa - 5; Fungi - 187; Plants - 637; Viruses - 0; Other Eukaryotes - 179 (source: NCBI BLink).  protein_id AT1G62660.1p  transcript_id AT1G62660.1  protein_id AT1G62660.1p  transcript_id AT1G62660.1  
At1g62670	chr1:023204773	0.0	C/23204773-23206665	AT1G62670.1  CDS  gene_syn F23N19.4, F23N19_4  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: leaf whorl, embryo, sepal, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G63130.1); Has 29504 Blast hits to 6291 proteins in 193 species: Archae - 6; Bacteria - 24; Metazoa - 1337; Fungi - 884; Plants - 25476; Viruses - 0; Other Eukaryotes - 1777 (source: NCBI BLink).  protein_id AT1G62670.1p  transcript_id AT1G62670.1  protein_id AT1G62670.1p  transcript_id AT1G62670.1  
At1g62680	chr1:023208247	0.0	C/23208247-23209893	AT1G62680.1  CDS  gene_syn F23N19.22, F23N19_22  go_component chloroplast|GO:0009507||IEA  product unknown protein  note LOCATED IN: chloroplast; EXPRESSED IN: shoot apex, leaf whorl, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G63130.1); Has 26421 Blast hits to 6237 proteins in 192 species: Archae - 5; Bacteria - 22; Metazoa - 845; Fungi - 755; Plants - 23373; Viruses - 0; Other Eukaryotes - 1421 (source: NCBI BLink).  protein_id AT1G62680.1p  transcript_id AT1G62680.1  protein_id AT1G62680.1p  transcript_id AT1G62680.1  
At1g62690	chr1:023210995	0.0	C/23210995-23211111,23210581-23210904	AT1G62690.1  CDS  gene_syn F23N19.23, F23N19_23  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G62690.1p  transcript_id AT1G62690.1  protein_id AT1G62690.1p  transcript_id AT1G62690.1  
At1g62695	chr1:023211745	0.0	W/23211745-23212724	AT1G62695.1  mRNA_TE_gene  pseudo  gene_syn F23N19.5  note Transposable element gene, pseudogene, similar to Unknown protein, blastp match of 30% identity and 1.6e-09 P-value to GP|22773232|gb|AAN06838.1||AC099401 Unknown protein {Oryza sativa (japonica cultivar-group)}  
At1g62700	chr1:023217757	0.0	C/23217757-23217916,23217385-23217656,23216218-23216970	AT1G62700.1  CDS  gene_syn ANAC026, F23N19.6, F23N19_6, VASCULAR RELATED NAC-DOMAIN PROTEIN 5, VND5  gene ANAC026  function Encodes a NAC-domain transcription factor. Expressed in the vascular tissue.  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ANAC026; transcription factor  note ANAC026; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem vascular system, inflorescence meristem, root vascular system, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC007 (ARABIDOPSIS NAC 007); transcription factor (TAIR:AT1G12260.1); Has 1880 Blast hits to 1865 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 6; Plants - 1613; Viruses - 0; Other Eukaryotes - 233 (source: NCBI BLink).  protein_id AT1G62700.1p  transcript_id AT1G62700.1  protein_id AT1G62700.1p  transcript_id AT1G62700.1  
At1g62710	chr1:023226654	0.0	C/23226654-23226857,23226196-23226360,23225555-23225711,23225363-23225448,23225071-23225270,23224945-23224993,23224648-23224857,23224342-23224542,23224070-23224258	AT1G62710.1  CDS  gene_syn BETA VACUOLAR PROCESSING ENZYME, BETA-VPE, BETAVPE, F23N19.7, F23N19_7  gene BETA-VPE  function Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteases that is expressed specifically in seeds and is essential for the proper processing of storage proteins.  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||ISS  go_process vacuolar protein processing|GO:0006624|7579169|ISS  go_process response to salt stress|GO:0009651|11351099|IEP  go_function cysteine-type endopeptidase activity|GO:0004197|19154227|ISS  go_function cysteine-type endopeptidase activity|GO:0004197||ISS  product BETA-VPE (BETA VACUOLAR PROCESSING ENZYME); cysteine-type endopeptidase  note BETA VACUOLAR PROCESSING ENZYME (BETA-VPE); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: response to salt stress, proteolysis, vacuolar protein processing; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C13, legumain (InterPro:IPR001096); BEST Arabidopsis thaliana protein match is: GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME); cysteine-type endopeptidase (TAIR:AT4G32940.1); Has 602 Blast hits to 600 proteins in 190 species: Archae - 4; Bacteria - 2; Metazoa - 232; Fungi - 78; Plants - 185; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT1G62710.1p  transcript_id AT1G62710.1  protein_id AT1G62710.1p  transcript_id AT1G62710.1  
At1g62720	chr1:023227574	0.0	W/23227574-23229031	AT1G62720.1  CDS  gene_syn F23N19.8, F23N19_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62680.1); Has 25425 Blast hits to 6071 proteins in 187 species: Archae - 4; Bacteria - 14; Metazoa - 596; Fungi - 591; Plants - 23031; Viruses - 0; Other Eukaryotes - 1189 (source: NCBI BLink).  protein_id AT1G62720.1p  transcript_id AT1G62720.1  protein_id AT1G62720.1p  transcript_id AT1G62720.1  
At1g62730	chr1:023229204	0.0	C/23229204-23230118	AT1G62730.1  CDS  gene_syn F23N19.9, F23N19_9  go_process biosynthetic process|GO:0009058||IEA  go_function transferase activity|GO:0016740||IEA  product transferase  note transferase; FUNCTIONS IN: transferase activity; INVOLVED IN: biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid synthase (InterPro:IPR008949), Squalene/phytoene synthase (InterPro:IPR002060); Has 671 Blast hits to 669 proteins in 308 species: Archae - 0; Bacteria - 381; Metazoa - 94; Fungi - 65; Plants - 24; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT1G62730.1p  transcript_id AT1G62730.1  protein_id AT1G62730.1p  transcript_id AT1G62730.1  
At1g62740	chr1:023231026	0.0	W/23231026-23231901,23232000-23232288,23232381-23232466,23232569-23232792,23232890-23232956,23233059-23233118,23233267-23233380	AT1G62740.1  CDS  gene_syn F23N19.10, F23N19_10  go_component plasma membrane|GO:0005886|17317660|IDA  go_function binding|GO:0005488||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process response to stress|GO:0006950||ISS  product stress-inducible protein, putative  note stress-inducible protein, putative; FUNCTIONS IN: binding; INVOLVED IN: response to stress; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT1G12270.1); Has 34012 Blast hits to 14045 proteins in 887 species: Archae - 1292; Bacteria - 9292; Metazoa - 8243; Fungi - 1967; Plants - 2227; Viruses - 4; Other Eukaryotes - 10987 (source: NCBI BLink).  protein_id AT1G62740.1p  transcript_id AT1G62740.1  protein_id AT1G62740.1p  transcript_id AT1G62740.1  
At1g62750	chr1:023236069	0.0	C/23236069-23236321,23234462-23235879,23233878-23234390,23233622-23233789	AT1G62750.1  CDS  gene_syn ATSCO1, ATSCO1/CPEF-G, F23N19.11, F23N19_11, SCO1, SNOWY COTYLEDON 1  gene SCO1  function Nuclear encoded protein consists of the five domains conserved in EF-G proteins, with two GTP-binding sites in the first domain, and an additional transit peptide at the N-terminus. Localized in chloroplasts. Point mutation results in a delay in the onset of germination. At early developmental stage embryos still contain undifferentiated proplastids. The greening of cotyledons is severely impaired in light-grown mutant sco1 seedlings, whereas the following true leaves develop normally as in wild-type plants.  go_component mitochondrion|GO:0005739|17137349|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function ATP binding|GO:0005524|17137349|IDA  go_component chloroplast|GO:0009507|16525888|IDA  go_process chloroplast organization|GO:0009658|16525888|IMP  go_process negative regulation of seed germination|GO:0010187|16525888|IMP  go_process inflorescence development|GO:0010229|16525888|IMP  go_function translation elongation factor activity|GO:0003746||ISS  go_function translation factor activity, nucleic acid binding|GO:0008135||ISS  product SCO1 (SNOWY COTYLEDON 1); ATP binding / translation elongation factor/ translation factor, nucleic acid binding  note SNOWY COTYLEDON 1 (SCO1); FUNCTIONS IN: translation factor activity, nucleic acid binding, translation elongation factor activity, ATP binding; INVOLVED IN: inflorescence development, negative regulation of seed germination, chloroplast organization; LOCATED IN: mitochondrion, apoplast, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EFG/EF2, domain IV (InterPro:IPR005517), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Translation elongation factor EFG/EF2 (InterPro:IPR004540), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721), Elongation factor G, III and V (InterPro:IPR009022), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: mitochondrial elongation factor, putative (TAIR:AT2G45030.1); Has 54497 Blast hits to 47318 proteins in 4839 species: Archae - 677; Bacteria - 26019; Metazoa - 3479; Fungi - 4098; Plants - 1006; Viruses - 0; Other Eukaryotes - 19218 (source: NCBI BLink).  protein_id AT1G62750.1p  transcript_id AT1G62750.1  protein_id AT1G62750.1p  transcript_id AT1G62750.1  
At1g62760	chr1:023237574	0.0	C/23237574-23238512	AT1G62760.1  CDS  gene_syn F23N19.27, F23N19_27  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; EXPRESSED IN: stem, male gametophyte, sepal, carpel, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT4G25260.1); Has 138281 Blast hits to 57115 proteins in 1858 species: Archae - 182; Bacteria - 16404; Metazoa - 56481; Fungi - 22217; Plants - 15710; Viruses - 4073; Other Eukaryotes - 23214 (source: NCBI BLink).  protein_id AT1G62760.1p  transcript_id AT1G62760.1  protein_id AT1G62760.1p  transcript_id AT1G62760.1  
At1g62766	chr1:023240661	0.0	C/23240661-23242889	AT1G62766.1  mRNA_TE_gene  pseudo  gene_syn F23N19.13  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 6.1e-299 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At1g62770	chr1:023246565	0.0	C/23246565-23246836,23246085-23246427	AT1G62770.1  CDS  gene_syn F23N19.14, F23N19_14  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: PME1 (PECTIN METHYLESTERASE INHIBITOR 1); enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor (TAIR:AT4G12390.1); Has 424 Blast hits to 419 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 424; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G62770.1p  transcript_id AT1G62770.1  protein_id AT1G62770.1p  transcript_id AT1G62770.1  
At1g62780	chr1:023250971	0.0	C/23250971-23251066,23250741-23250887,23250555-23250652,23250163-23250235,23250016-23250076,23249838-23249923,23249655-23249744,23249349-23249411	AT1G62780.1  CDS  gene_syn F23N19.15, F23N19_15  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 66 Blast hits to 66 proteins in 20 species: Archae - 2; Bacteria - 4; Metazoa - 23; Fungi - 2; Plants - 29; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G62780.1p  transcript_id AT1G62780.1  protein_id AT1G62780.1p  transcript_id AT1G62780.1  
At1g62790	chr1:023252369	0.0	W/23252369-23252675,23252896-23252943,23253384-23253481	AT1G62790.1  CDS  gene_syn F23N19.16, F23N19_16  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: receptor serine/threonine kinase, putative (TAIR:AT1G70250.1); Has 190 Blast hits to 186 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 190; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G62790.1p  transcript_id AT1G62790.1  protein_id AT1G62790.1p  transcript_id AT1G62790.1  
At1g62790	chr1:023252369	0.0	W/23252369-23252675,23252896-23252943,23253387-23253481	AT1G62790.2  CDS  gene_syn F23N19.16, F23N19_16  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: receptor serine/threonine kinase, putative (TAIR:AT1G70250.1); Has 191 Blast hits to 187 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 191; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G62790.2p  transcript_id AT1G62790.2  protein_id AT1G62790.2p  transcript_id AT1G62790.2  
At1g62800	chr1:023257363	0.0	C/23257363-23257416,23257136-23257207,23256953-23257014,23256618-23256695,23256436-23256535,23256115-23256235,23255757-23255920,23255487-23255624,23255115-23255236,23254927-23255021,23254692-23254812,23253934-23254018	AT1G62800.1  CDS  gene_syn ASP4, ASPARTATE AMINOTRANSFERASE 4, F23N19.17, F23N19_17  gene ASP4  function Encodes aspartate aminotransferase (Asp4).  go_process amino acid metabolic process|GO:0006520||IEA  go_process asparagine catabolic process|GO:0006530||IEA  go_process biosynthetic process|GO:0009058||IEA  go_process aspartate transamidation|GO:0019465||IEA  go_process glutamate catabolic process to oxaloacetate|GO:0019554||IEA  go_function catalytic activity|GO:0003824||IEA  go_function transaminase activity|GO:0008483||IEA  go_function transferase activity, transferring nitrogenous groups|GO:0016769||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_component cytosol|GO:0005829|7894512|ISS  product ASP4 (ASPARTATE AMINOTRANSFERASE 4); catalytic/ pyridoxal phosphate binding / transaminase/ transferase, transferring nitrogenous groups  note ASPARTATE AMINOTRANSFERASE 4 (ASP4); FUNCTIONS IN: pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity; INVOLVED IN: amino acid metabolic process, asparagine catabolic process, biosynthetic process, glutamate catabolic process to oxaloacetate, aspartate transamidation; LOCATED IN: cytosol; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Aspartate/other aminotransferase (InterPro:IPR000796), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: ASP2 (ASPARTATE AMINOTRANSFERASE 2); L-aspartate:2-oxoglutarate aminotransferase (TAIR:AT5G19550.1); Has 3788 Blast hits to 3785 proteins in 883 species: Archae - 1; Bacteria - 2162; Metazoa - 395; Fungi - 262; Plants - 329; Viruses - 0; Other Eukaryotes - 639 (source: NCBI BLink).  protein_id AT1G62800.1p  transcript_id AT1G62800.1  protein_id AT1G62800.1p  transcript_id AT1G62800.1  
At1g62800	chr1:023257363	0.0	C/23257363-23257416,23257136-23257207,23256953-23257014,23256618-23256701,23256436-23256535,23256115-23256235,23255757-23255920,23255487-23255624,23255115-23255236,23254927-23255021,23254692-23254812,23253934-23254018	AT1G62800.2  CDS  gene_syn ASP4, ASPARTATE AMINOTRANSFERASE 4, F23N19.17, F23N19_17  gene ASP4  function Encodes aspartate aminotransferase (Asp4).  go_process amino acid metabolic process|GO:0006520||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function catalytic activity|GO:0003824||IEA  go_function transaminase activity|GO:0008483||IEA  go_function transferase activity, transferring nitrogenous groups|GO:0016769||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_component cytosol|GO:0005829|7894512|ISS  product ASP4 (ASPARTATE AMINOTRANSFERASE 4); catalytic/ pyridoxal phosphate binding / transaminase/ transferase, transferring nitrogenous groups  note ASPARTATE AMINOTRANSFERASE 4 (ASP4); FUNCTIONS IN: transferase activity, transferring nitrogenous groups, pyridoxal phosphate binding, transaminase activity, catalytic activity; INVOLVED IN: amino acid metabolic process, biosynthetic process; LOCATED IN: cytosol; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Aspartate/other aminotransferase (InterPro:IPR000796), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: ASP2 (ASPARTATE AMINOTRANSFERASE 2); L-aspartate:2-oxoglutarate aminotransferase (TAIR:AT5G19550.1); Has 3739 Blast hits to 3736 proteins in 871 species: Archae - 0; Bacteria - 2135; Metazoa - 395; Fungi - 262; Plants - 324; Viruses - 0; Other Eukaryotes - 623 (source: NCBI BLink).  protein_id AT1G62800.2p  transcript_id AT1G62800.2  protein_id AT1G62800.2p  transcript_id AT1G62800.2  
At1g62810	chr1:023261281	0.0	C/23261281-23261772,23260322-23260793,23259826-23260124,23259302-23259415,23258770-23259222,23258555-23258652,23258253-23258463	AT1G62810.1  CDS  gene_syn F23N19.18, F23N19_18  go_component endomembrane system|GO:0012505||IEA  go_process cellular amine metabolic process|GO:0009308||IEA  go_function copper ion binding|GO:0005507||IEA  go_function amine oxidase activity|GO:0008131||IEA  go_function quinone binding|GO:0048038||IEA  go_function copper ion binding|GO:0005507||ISS  product copper amine oxidase, putative  note copper amine oxidase, putative; FUNCTIONS IN: amine oxidase activity, quinone binding, copper ion binding; INVOLVED IN: cellular amine metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal region (InterPro:IPR016182), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: copper amine oxidase, putative (TAIR:AT3G43670.1); Has 1083 Blast hits to 1081 proteins in 163 species: Archae - 4; Bacteria - 240; Metazoa - 216; Fungi - 284; Plants - 136; Viruses - 0; Other Eukaryotes - 203 (source: NCBI BLink).  protein_id AT1G62810.1p  transcript_id AT1G62810.1  protein_id AT1G62810.1p  transcript_id AT1G62810.1  
At1g62820	chr1:023263822	0.0	C/23263822-23264268	AT1G62820.1  CDS  gene_syn F23N19.25, F23N19_25  go_component nucleus|GO:0005634|14617066|IDA  go_function calcium ion binding|GO:0005509||IEA  go_process response to cold|GO:0009409|14617066|IEP  go_function calcium ion binding|GO:0005509||ISS  product calmodulin, putative  note calmodulin, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to cold; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin, putative (TAIR:AT1G12310.1); Has 12799 Blast hits to 10828 proteins in 1248 species: Archae - 0; Bacteria - 22; Metazoa - 5376; Fungi - 3677; Plants - 2002; Viruses - 0; Other Eukaryotes - 1722 (source: NCBI BLink).  protein_id AT1G62820.1p  transcript_id AT1G62820.1  protein_id AT1G62820.1p  transcript_id AT1G62820.1  
At1g62830	chr1:023264638	0.0	C/23264638-23267172	AT1G62830.1  CDS  gene_syn ATSWP1, F23N19.21, F23N19_21, LDL1, LSD1-LIKE1, SWP1  gene LDL1  function Encodes a homolog of human Lysine-Specific Demethylase1. Involved in H3K4 methylation of target genes including the flowering time loci FLC and FWA. Located in nucleus. Negatively regulates root elongation. Involved in repression of LRP1 via histone deacetylation.  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component nucleus|GO:0005634|18835563|IDA  go_process histone deacetylation|GO:0016575|18835563|IMP  go_process root development|GO:0048364|18835563|IMP  go_process histone H3-K4 methylation|GO:0051568|17921315|IMP  go_function amine oxidase activity|GO:0008131||ISS  product LDL1 (LSD1-LIKE1); amine oxidase/ electron carrier/ oxidoreductase  note LSD1-LIKE1 (LDL1); FUNCTIONS IN: electron carrier activity, amine oxidase activity, oxidoreductase activity; INVOLVED IN: histone H3-K4 methylation, root development, histone deacetylation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), SWIRM (InterPro:IPR007526); BEST Arabidopsis thaliana protein match is: FLD (FLOWERING LOCUS D); amine oxidase/ electron carrier/ oxidoreductase (TAIR:AT3G10390.1); Has 4804 Blast hits to 4157 proteins in 659 species: Archae - 29; Bacteria - 1624; Metazoa - 1482; Fungi - 360; Plants - 382; Viruses - 0; Other Eukaryotes - 927 (source: NCBI BLink).  protein_id AT1G62830.1p  transcript_id AT1G62830.1  protein_id AT1G62830.1p  transcript_id AT1G62830.1  
At1g62835	chr1:023267976	0.0	C/23267976-23268534	AT1G62835.1  pseudogenic_transcript  pseudo  gene_syn F23N19.24  note pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 39% identity and 1.2e-35 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}  
At1g62840	chr1:023271481	0.0	W/23271481-23271540,23271793-23272407	AT1G62840.1  CDS  gene_syn F23N19.19, F23N19_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1442 (InterPro:IPR009902); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12320.1); Has 42 Blast hits to 42 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G62840.1p  transcript_id AT1G62840.1  protein_id AT1G62840.1p  transcript_id AT1G62840.1  
At1g62850	chr1:023273908	0.0	C/23273908-23274211,23273505-23273564,23273341-23273423,23273066-23273130,23272954-23272987,23272793-23272863,23272608-23272701	AT1G62850.2  CDS  go_process translational termination|GO:0006415||IEA  go_function translation release factor activity|GO:0003747||IEA  product translation release factor  note translation release factor; FUNCTIONS IN: translation release factor activity; INVOLVED IN: translational termination; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Class I peptide chain release factor (InterPro:IPR000352); Has 1567 Blast hits to 1567 proteins in 680 species: Archae - 0; Bacteria - 1054; Metazoa - 116; Fungi - 68; Plants - 20; Viruses - 0; Other Eukaryotes - 309 (source: NCBI BLink).  protein_id AT1G62850.2p  transcript_id AT1G62850.2  protein_id AT1G62850.2p  transcript_id AT1G62850.2  
At1g62850	chr1:023273908	0.0	C/23273908-23274211,23273505-23273564,23273341-23273423,23273066-23273130,23272954-23272987,23272793-23272863,23272608-23272701	AT1G62850.3  CDS  go_process translational termination|GO:0006415||IEA  go_function translation release factor activity|GO:0003747||IEA  product translation release factor  note translation release factor; FUNCTIONS IN: translation release factor activity; INVOLVED IN: translational termination; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Class I peptide chain release factor (InterPro:IPR000352); Has 1567 Blast hits to 1567 proteins in 680 species: Archae - 0; Bacteria - 1054; Metazoa - 116; Fungi - 68; Plants - 20; Viruses - 0; Other Eukaryotes - 309 (source: NCBI BLink).  protein_id AT1G62850.3p  transcript_id AT1G62850.3  protein_id AT1G62850.3p  transcript_id AT1G62850.3  
At1g62860	chr1:023274676	0.0	C/23274676-23276477	AT1G62860.1  pseudogenic_transcript  pseudo  gene_syn F16P17.1, F16P17_1  function pseudogene of pentatricopeptide (PPR) repeat-containing protein  
At1g62863	chr1:023279166	0.0	W/23279166-23279333	AT1G62863.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G62863.1p  transcript_id AT1G62863.1  protein_id AT1G62863.1p  transcript_id AT1G62863.1  
At1g62870	chr1:023284220	0.0	C/23284220-23286508	AT1G62870.1  CDS  gene_syn F16P17.2, F16P17_2  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12380.1); Has 149 Blast hits to 144 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 3; Plants - 102; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G62870.1p  transcript_id AT1G62870.1  protein_id AT1G62870.1p  transcript_id AT1G62870.1  
At1g62880	chr1:023292125	0.0	W/23292125-23292196,23292788-23292969,23293067-23293189,23293271-23293307	AT1G62880.1  CDS  gene_syn F16P17.3, F16P17_3  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_component membrane|GO:0016020||ISS  go_function molecular_function|GO:0003674||ND  product cornichon family protein  note cornichon family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular signaling cascade; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cornichon (InterPro:IPR003377); BEST Arabidopsis thaliana protein match is: cornichon family protein (TAIR:AT1G12390.1); Has 465 Blast hits to 465 proteins in 128 species: Archae - 0; Bacteria - 0; Metazoa - 271; Fungi - 110; Plants - 43; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT1G62880.1p  transcript_id AT1G62880.1  protein_id AT1G62880.1p  transcript_id AT1G62880.1  
At1g62880	chr1:023292125	0.0	W/23292125-23292196,23294393-23294473	AT1G62880.2  CDS  gene_syn F16P17.3, F16P17_3  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||ISS  go_function molecular_function|GO:0003674||ND  product cornichon family protein  note cornichon family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G62880.2p  transcript_id AT1G62880.2  protein_id AT1G62880.2p  transcript_id AT1G62880.2  
At1g62886	chr1:023294413	0.0	W/23294413-23294447,23294527-23294710	AT1G62886.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process nucleotide-excision repair|GO:0006289||IEA  go_function DNA binding|GO:0003677||IEA  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleotide-excision repair; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Nucleotide excision repair, TFIIH, subunit TTDA (InterPro:IPR009400); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT1G12400.1); Has 108 Blast hits to 108 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 74; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G62886.1p  transcript_id AT1G62886.1  protein_id AT1G62886.1p  transcript_id AT1G62886.1  
At1g62890	chr1:023294977	0.0	W/23294977-23295564	AT1G62890.1  mRNA_TE_gene  pseudo  gene_syn F16P17.24, F16P17_24  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G17200.1); similar to hypothetical protein 23.t00046 [Brassica oleracea] (GB:ABD65629.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446)  
At1g62900	chr1:023297792	0.0	W/23297792-23298044,23298130-23298194,23298237-23298536	AT1G62900.1  CDS  gene_syn F16P17.4, F16P17_4  go_function O-methyltransferase activity|GO:0008171||IEA  go_component cytosol|GO:0005829|9484457|TAS  product O-methyltransferase, putative  note O-methyltransferase, putative; FUNCTIONS IN: O-methyltransferase activity; LOCATED IN: cytosol; CONTAINS InterPro DOMAIN/s: O-methyltransferase, family 2 (InterPro:IPR001077); BEST Arabidopsis thaliana protein match is: O-methyltransferase, putative (TAIR:AT1G63140.2); Has 2148 Blast hits to 2146 proteins in 422 species: Archae - 0; Bacteria - 642; Metazoa - 82; Fungi - 443; Plants - 879; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).  protein_id AT1G62900.1p  transcript_id AT1G62900.1  protein_id AT1G62900.1p  transcript_id AT1G62900.1  
At1g62910	chr1:023299060	0.0	W/23299060-23300898,23301533-23301636,23301704-23303162	AT1G62910.1  CDS  gene_syn F16P17.6, F16P17_6  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; EXPRESSED IN: stem, sepal, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G63150.1); Has 51543 Blast hits to 6307 proteins in 187 species: Archae - 10; Bacteria - 38; Metazoa - 2102; Fungi - 1547; Plants - 44634; Viruses - 0; Other Eukaryotes - 3212 (source: NCBI BLink).  protein_id AT1G62910.1p  transcript_id AT1G62910.1  protein_id AT1G62910.1p  transcript_id AT1G62910.1  
At1g62920	chr1:023304313	0.0	W/23304313-23304444,23304680-23304770,23305021-23305293,23305728-23305794,23306050-23306209,23306315-23306374	AT1G62920.1  CDS  gene_syn F16P17.25, F16P17_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Proteasome maturation factor UMP1 (InterPro:IPR008012); BEST Arabidopsis thaliana protein match is: proteasome maturation factor UMP1 family protein (TAIR:AT1G67250.1); Has 51 Blast hits to 51 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G62920.1p  transcript_id AT1G62920.1  protein_id AT1G62920.1p  transcript_id AT1G62920.1  
At1g62930	chr1:023306534	0.0	W/23306534-23308423	AT1G62930.1  CDS  gene_syn F16P17.7, F16P17_7  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G63130.1); Has 29147 Blast hits to 6292 proteins in 192 species: Archae - 8; Bacteria - 22; Metazoa - 1258; Fungi - 858; Plants - 25291; Viruses - 0; Other Eukaryotes - 1710 (source: NCBI BLink).  protein_id AT1G62930.1p  transcript_id AT1G62930.1  protein_id AT1G62930.1p  transcript_id AT1G62930.1  
At1g62935	chr1:023308880	0.0	C/23308880-23309410	AT1G62935.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 45 Blast hits to 45 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 6; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT1G62935.1p  transcript_id AT1G62935.1  protein_id AT1G62935.1p  transcript_id AT1G62935.1  
At1g62940	chr1:023310554	0.0	W/23310554-23310637,23310752-23311081,23311290-23311868,23311957-23312301,23312386-23312453,23312525-23312747	AT1G62940.1  CDS  gene_syn ACOS5, ACYL-COA SYNTHETASE 5, F16P17.9, F16P17_9  gene ACOS5  function encodes an acyl-CoA synthetase, has in vitro activity towards medium- to long-chain fatty acids and their hydroxylated derivatives. Expressed in the tapetum. Involved in pollen wall exine formation. Null mutants were devoid of pollen grains at anther maturity and were completely male sterile.  go_component cytoplasm|GO:0005737|19218397|IDA  go_process pollen exine formation|GO:0010584||IMP  go_process acyl-CoA biosynthetic process|GO:0046949|19218397|IDA  go_process sporopollenin biosynthetic process|GO:0080110|19218397|IMP  go_process sporopollenin biosynthetic process|GO:0080110|19218397|TAS  go_function long-chain-fatty-acid-CoA ligase activity|GO:0004467|19218397|IDA  go_function 4-coumarate-CoA ligase activity|GO:0016207|19218397|IDA  go_function 4-coumarate-CoA ligase activity|GO:0016207|3169018|ISS  go_function 4-coumarate-CoA ligase activity|GO:0016207||ISS  go_function medium-chain-fatty-acid-CoA ligase activity|GO:0031956|19218397|IDA  product ACOS5 (ACYL-COA SYNTHETASE 5); 4-coumarate-CoA ligase/ long-chain-fatty-acid-CoA ligase/ medium-chain-fatty-acid-CoA ligase  note ACYL-COA SYNTHETASE 5 (ACOS5); FUNCTIONS IN: medium-chain-fatty-acid-CoA ligase activity, long-chain-fatty-acid-CoA ligase activity, 4-coumarate-CoA ligase activity; INVOLVED IN: sporopollenin biosynthetic process, pollen exine formation, acyl-CoA biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: tapetum, leaf whorl, sepal, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: 4CL2 (4-COUMARATE:COA LIGASE 2); 4-coumarate-CoA ligase (TAIR:AT3G21240.1); Has 51853 Blast hits to 47622 proteins in 2217 species: Archae - 588; Bacteria - 28606; Metazoa - 2987; Fungi - 2634; Plants - 1316; Viruses - 1; Other Eukaryotes - 15721 (source: NCBI BLink).  protein_id AT1G62940.1p  transcript_id AT1G62940.1  protein_id AT1G62940.1p  transcript_id AT1G62940.1  
At1g62950	chr1:023315294	0.0	W/23315294-23316462,23316558-23318061	AT1G62950.1  CDS  gene_syn F16P17.10, F16P17_10  go_component membrane|GO:0016020|17432890|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT1G12460.1); Has 117125 Blast hits to 80773 proteins in 3028 species: Archae - 69; Bacteria - 8473; Metazoa - 45582; Fungi - 5241; Plants - 42781; Viruses - 245; Other Eukaryotes - 14734 (source: NCBI BLink).  protein_id AT1G62950.1p  transcript_id AT1G62950.1  protein_id AT1G62950.1p  transcript_id AT1G62950.1  
At1g62960	chr1:023319693	0.0	C/23319693-23320229,23319491-23319604,23319212-23319372,23318271-23319132	AT1G62960.1  CDS  gene_syn ACC SYNTHASE 10, ACS10, F16P17.11, F16P17_11  gene ACS10  function Encodes an aminotransferase with broad specificity for aspartate and aromatic amino aids such as tyrosine and phenylalanine. It does not act on branched chain amino acids and does not have ACC synthase activity.  go_component cellular_component|GO:0005575||ND  go_process cellular amino acid and derivative metabolic process|GO:0006519|12968022|IGI  go_process ethylene biosynthetic process|GO:0009693||ISS  go_function L-aspartate:2-oxoglutarate aminotransferase activity|GO:0004069|12968022|IGI  go_function aromatic-amino-acid:2-oxoglutarate aminotransferase activity|GO:0008793|12968022|IGI  go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847|12968022|IDA  go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847||ISS  product ACS10 (ACC SYNTHASE 10); 1-aminocyclopropane-1-carboxylate synthase/ L-aspartate:2-oxoglutarate aminotransferase/ aromatic-amino-acid:2-oxoglutarate aminotransferase  note ACC SYNTHASE 10 (ACS10); FUNCTIONS IN: L-aspartate:2-oxoglutarate aminotransferase activity, aromatic-amino-acid:2-oxoglutarate aminotransferase activity, 1-aminocyclopropane-1-carboxylate synthase activity; INVOLVED IN: ethylene biosynthetic process, cellular amino acid and derivative metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase, class I and II (InterPro:IPR004839), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: ACS12; 1-aminocyclopropane-1-carboxylate synthase/ L-aspartate:2-oxoglutarate aminotransferase/ aromatic-amino-acid:2-oxoglutarate aminotransferase (TAIR:AT5G51690.1); Has 15554 Blast hits to 15551 proteins in 1632 species: Archae - 441; Bacteria - 8710; Metazoa - 444; Fungi - 429; Plants - 900; Viruses - 0; Other Eukaryotes - 4630 (source: NCBI BLink).  protein_id AT1G62960.1p  transcript_id AT1G62960.1  protein_id AT1G62960.1p  transcript_id AT1G62960.1  
At1g62970	chr1:023323358	0.0	W/23323358-23325751	AT1G62970.1  CDS  gene_syn F16P17.12, F16P17_12  go_function heat shock protein binding|GO:0031072||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT5G09540.1); Has 108878 Blast hits to 55142 proteins in 1813 species: Archae - 184; Bacteria - 13457; Metazoa - 44631; Fungi - 19552; Plants - 9533; Viruses - 2427; Other Eukaryotes - 19094 (source: NCBI BLink).  protein_id AT1G62970.1p  transcript_id AT1G62970.1  protein_id AT1G62970.1p  transcript_id AT1G62970.1  
At1g62975	chr1:023328901	0.0	W/23328901-23329218,23329751-23330152,23330463-23330522	AT1G62975.1  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product basic helix-loop-helix (bHLH) family protein (bHLH125)  note basic helix-loop-helix (bHLH) family protein (bHLH125); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT1G12540.1); Has 304 Blast hits to 303 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 65; Fungi - 0; Plants - 237; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G62975.1p  transcript_id AT1G62975.1  protein_id AT1G62975.1p  transcript_id AT1G62975.1  
At1g62978	chr1:023331462	0.0	C/23331462-23331608	AT1G62978.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G62978.1p  transcript_id AT1G62978.1  protein_id AT1G62978.1p  transcript_id AT1G62978.1  
At1g62980	chr1:023331728	0.0	W/23331728-23331872,23332125-23332440,23332622-23332934	AT1G62980.1  CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN A18, ATEXP18, ATEXPA18, ATHEXP ALPHA 1.25, EXP18, EXPANSIN 18, F16P17.14, F16P17_14  gene ATEXPA18  function Alpha-expansin 18. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828||ISS  go_process plant-type cell wall modification during multidimensional cell growth|GO:0009831||ISS  product ATEXPA18 (ARABIDOPSIS THALIANA EXPANSIN A18)  note ARABIDOPSIS THALIANA EXPANSIN A18 (ATEXPA18); INVOLVED IN: plant-type cell wall modification during multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root hair, root; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: ATEXPA7 (ARABIDOPSIS THALIANA EXPANSIN A7) (TAIR:AT1G12560.1); Has 1437 Blast hits to 1436 proteins in 133 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 32; Plants - 1371; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G62980.1p  transcript_id AT1G62980.1  protein_id AT1G62980.1p  transcript_id AT1G62980.1  
At1g62981	chr1:023333793	0.0	W/23333793-23334824	AT1G62981.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1191 (InterPro:IPR010605); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22900.1); Has 62 Blast hits to 62 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G62981.1p  transcript_id AT1G62981.1  protein_id AT1G62981.1p  transcript_id AT1G62981.1  
At1g62990	chr1:023337468	0.0	W/23337468-23337749,23338648-23338768,23339323-23339522,23339617-23339748,23340208-23340348	AT1G62990.1  CDS  gene_syn F16P17.16, F16P17_16, IXR11, KNAT7, KNOTTED-LIKE HOMEOBOX OF ARABIDOPSIS THALIANA 7, TRANSCRIPTION FACTOR KNAT7  gene KNAT7  function Encodes a homeodomain transcription factor of the Knotted family. May be involved in secondary cell wall biosynthesis. Mutants have moderately irregular xylem development. Expression of this gene is upregulated by SND1 and MYB46.  go_component nucleus|GO:0005634|18952777|IDA  go_process xylem histogenesis|GO:0010089|15980264|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|11701881|ISS  product KNAT7 (KNOTTED-LIKE HOMEOBOX OF ARABIDOPSIS THALIANA 7); DNA binding / transcription activator/ transcription factor  note KNOTTED-LIKE HOMEOBOX OF ARABIDOPSIS THALIANA 7 (KNAT7); FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: xylem histogenesis, regulation of secondary cell wall thickening; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: KNOX2 (InterPro:IPR005541), ELK (InterPro:IPR005539), Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), KNOX1 (InterPro:IPR005540), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3); transcription activator/ transcription factor (TAIR:AT5G25220.2); Has 4279 Blast hits to 4278 proteins in 254 species: Archae - 0; Bacteria - 0; Metazoa - 1674; Fungi - 186; Plants - 2327; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).  protein_id AT1G62990.1p  transcript_id AT1G62990.1  protein_id AT1G62990.1p  transcript_id AT1G62990.1  
At1g63000	chr1:023342510	0.0	W/23342510-23342959,23343404-23343859	AT1G63000.1  CDS  gene_syn UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1, F16P17.17, F16P17_17, NRS/ER, NUCLEOTIDE-RHAMNOSE SYNTHASE/EPIMERASE-REDUCTASE, UER1  gene NRS/ER  go_component plasma membrane|GO:0005886|17644812|IDA  go_component soluble fraction|GO:0005625|17190829|IDA  go_process UDP-rhamnose biosynthetic process|GO:0010253|17190829|IDA  go_process dTDP-rhamnose biosynthetic process|GO:0019305|15020741|IDA  go_function dTDP-4-dehydrorhamnose 3,5-epimerase activity|GO:0008830|15020741|IDA  go_function dTDP-4-dehydrorhamnose reductase activity|GO:0008831|15020741|IDA  go_function UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity|GO:0010489|17190829|TAS  go_function UDP-4-keto-rhamnose-4-keto-reductase activity|GO:0010490|17190829|TAS  product NRS/ER (NUCLEOTIDE-RHAMNOSE SYNTHASE/EPIMERASE-REDUCTASE); UDP-4-keto-6-deoxy-glucose-3,5-epimerase/ UDP-4-keto-rhamnose-4-keto-reductase/ dTDP-4-dehydrorhamnose 3,5-epimerase/ dTDP-4-dehydrorhamnose reductase  note NUCLEOTIDE-RHAMNOSE SYNTHASE/EPIMERASE-REDUCTASE (NRS/ER); FUNCTIONS IN: UDP-4-keto-rhamnose-4-keto-reductase activity, dTDP-4-dehydrorhamnose reductase activity, UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity, dTDP-4-dehydrorhamnose 3,5-epimerase activity; INVOLVED IN: dTDP-rhamnose biosynthetic process, UDP-rhamnose biosynthetic process; LOCATED IN: soluble fraction, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: RHM1 (RHAMNOSE BIOSYNTHESIS 1); UDP-L-rhamnose synthase/ UDP-glucose 4,6-dehydratase/ catalytic (TAIR:AT1G78570.1); Has 882 Blast hits to 882 proteins in 235 species: Archae - 35; Bacteria - 346; Metazoa - 9; Fungi - 16; Plants - 160; Viruses - 5; Other Eukaryotes - 311 (source: NCBI BLink).  protein_id AT1G63000.1p  transcript_id AT1G63000.1  protein_id AT1G63000.1p  transcript_id AT1G63000.1  
At1g63005	chr1:023345377	0.0	C/23345377-23345511	AT1G63005.1  miRNA  gene_syn MICRORNA399B, MIR399B  gene MIR399B  function Encodes a phosphate starvation-responsive microRNA that targets PHO2, an E2-UBC that negatively affects shoot phosphate content. miR399 can be negatively regulated by members of the non-coding gene families IPS1 and At4. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: CCUGCCAAAGGAGAGUUGCCC  go_process cellular response to phosphate starvation|GO:0016036|16387831|IEP  go_process cellular phosphate ion homeostasis|GO:0030643|16387831|IMP  go_process gene silencing by miRNA|GO:0035195|16387831|IMP  product MIR399B (MICRORNA399B); miRNA  transcript_id AT1G63005.1  
At1g63010	chr1:023350974	0.0	C/23350974-23351026,23350761-23350881,23350216-23350527,23350019-23350123,23349484-23349938,23349089-23349396,23348823-23348998,23348506-23348696,23348287-23348420,23347972-23348210	AT1G63010.2  CDS  gene_syn F16P17.18, F16P17_18  go_component plant-type vacuole|GO:0000325|16618929|IDA  go_component vacuolar membrane|GO:0005774|16618929|IDA  product SPX (SYG1/Pho81/XPR1) domain-containing protein  note SPX (SYG1/Pho81/XPR1) domain-containing protein; LOCATED IN: vacuolar membrane, plant-type vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SPX, N-terminal (InterPro:IPR004331), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: SPX (SYG1/Pho81/XPR1) domain-containing protein (TAIR:AT4G22990.1); Has 1741 Blast hits to 1740 proteins in 565 species: Archae - 25; Bacteria - 1089; Metazoa - 125; Fungi - 237; Plants - 130; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).  protein_id AT1G63010.2p  transcript_id AT1G63010.2  protein_id AT1G63010.2p  transcript_id AT1G63010.2  
At1g63010	chr1:023350974	0.0	C/23350974-23351026,23350761-23350881,23350216-23350527,23350019-23350123,23349484-23349938,23349089-23349396,23348823-23349004,23348506-23348696,23348287-23348420,23347972-23348210	AT1G63010.1  CDS  gene_syn F16P17.18, F16P17_18  go_component plant-type vacuole|GO:0000325|16618929|IDA  go_component vacuolar membrane|GO:0005774|16618929|IDA  product SPX (SYG1/Pho81/XPR1) domain-containing protein  note SPX (SYG1/Pho81/XPR1) domain-containing protein; LOCATED IN: vacuolar membrane, plant-type vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SPX, N-terminal (InterPro:IPR004331), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: SPX (SYG1/Pho81/XPR1) domain-containing protein (TAIR:AT4G22990.1); Has 1732 Blast hits to 1731 proteins in 564 species: Archae - 25; Bacteria - 1083; Metazoa - 127; Fungi - 235; Plants - 128; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).  protein_id AT1G63010.1p  transcript_id AT1G63010.1  protein_id AT1G63010.1p  transcript_id AT1G63010.1  
At1g63010	chr1:023350974	0.0	C/23350974-23351026,23350761-23350881,23350216-23350527,23350019-23350123,23349484-23349938,23349089-23349396,23348823-23349004,23348506-23348696,23348287-23348420,23347972-23348210	AT1G63010.3  CDS  gene_syn F16P17.18, F16P17_18  go_component vacuolar membrane|GO:0005774|16618929|IDA  product SPX (SYG1/Pho81/XPR1) domain-containing protein  note SPX (SYG1/Pho81/XPR1) domain-containing protein; LOCATED IN: vacuolar membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SPX, N-terminal (InterPro:IPR004331), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: SPX (SYG1/Pho81/XPR1) domain-containing protein (TAIR:AT4G22990.1); Has 1732 Blast hits to 1731 proteins in 564 species: Archae - 25; Bacteria - 1083; Metazoa - 127; Fungi - 235; Plants - 128; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).  protein_id AT1G63010.3p  transcript_id AT1G63010.3  protein_id AT1G63010.3p  transcript_id AT1G63010.3  
At1g63010	chr1:023350974	0.0	C/23350974-23351026,23350761-23350881,23350216-23350527,23350019-23350123,23349484-23349938,23349089-23349396,23348823-23349004,23348506-23348696,23348287-23348420,23347972-23348210	AT1G63010.4  CDS  gene_syn F16P17.18, F16P17_18  go_component vacuolar membrane|GO:0005774|16618929|IDA  product SPX (SYG1/Pho81/XPR1) domain-containing protein  note SPX (SYG1/Pho81/XPR1) domain-containing protein; LOCATED IN: vacuolar membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SPX, N-terminal (InterPro:IPR004331), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: SPX (SYG1/Pho81/XPR1) domain-containing protein (TAIR:AT4G22990.1); Has 1732 Blast hits to 1731 proteins in 564 species: Archae - 25; Bacteria - 1083; Metazoa - 127; Fungi - 235; Plants - 128; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).  protein_id AT1G63010.4p  transcript_id AT1G63010.4  protein_id AT1G63010.4p  transcript_id AT1G63010.4  
At1g63020	chr1:023361043	0.0	C/23361043-23361126,23360839-23360959,23360620-23360741,23360501-23360539,23360195-23360413,23359966-23360118,23359782-23359877,23357809-23359701,23357544-23357713,23357394-23357460,23357192-23357310,23356948-23357096,23356593-23356855,23356340-23356513,23356116-23356253,23355787-23356034,23355592-23355703,23355329-23355523	AT1G63020.1  CDS  gene_syn F16P17.19, F16P17_19, NRPD1, NRPD1A, NUCLEAR RNA POLYMERASE D 1A, POL IVA, SDE4, SILENCING MOVEMENT DEFICIENT 2, SMD2  gene NRPD1A  function Encodes one of two alternative largest subunits of a putative plant-specific RNA polymerase IV (aka RNA polymerase D). Required for posttranscriptional gene silencing.  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_component DNA-directed RNA polymerase IV complex|GO:0000418|19110459|IPI  go_component nucleus|GO:0005634|16839879|IDA  go_component nucleus|GO:0005634||ISS  go_process methylation-dependent chromatin silencing|GO:0006346|12198169|IMP  go_process transcription|GO:0006350||ISS  go_process cell-cell signaling|GO:0007267|16273107|IMP  go_process long-distance posttranscriptional gene silencing|GO:0010495|17785412|IMP  go_process RNA interference|GO:0016246|16273107|IMP  go_process RNA interference, production of siRNA|GO:0030422|15692015|IMP  go_process gene silencing by RNA|GO:0031047|15692015|IMP  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product NRPD1A (NUCLEAR RNA POLYMERASE D 1A); DNA binding / DNA-directed RNA polymerase  note NUCLEAR RNA POLYMERASE D 1A (NRPD1A); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: in 7 processes; LOCATED IN: nucleus, DNA-directed RNA polymerase IV complex; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083); BEST Arabidopsis thaliana protein match is: NRPD1B; DNA binding / DNA-directed RNA polymerase (TAIR:AT2G40030.1); Has 11637 Blast hits to 10674 proteins in 3732 species: Archae - 370; Bacteria - 3257; Metazoa - 1132; Fungi - 969; Plants - 2143; Viruses - 243; Other Eukaryotes - 3523 (source: NCBI BLink).  protein_id AT1G63020.1p  transcript_id AT1G63020.1  protein_id AT1G63020.1p  transcript_id AT1G63020.1  
At1g63030	chr1:023367603	0.0	C/23367603-23368148	AT1G63030.1  CDS  gene_syn DWARF AND DELAYED FLOWERING 2, F16P17.20, F16P17_20, ddf2  gene ddf2  function encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF2). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. Overexpression of this gene results in the reduction of gibberellic acid biosynthesis. This gene is expressed in all tissues examined, but most abundantly expressed in rosette leaves and stems. Overexpression of DDF1, a putative paralog of this gene, also reduces gibberellic acid biosynthesis and makes the plants more tolerant to high-salinity levels.  go_process gibberellin biosynthetic process|GO:0009686|14871311|IMP  go_process cell growth|GO:0016049|14871311|IMP  go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|14871311|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ddf2 (DWARF AND DELAYED FLOWERING 2); DNA binding / transcription factor  note DWARF AND DELAYED FLOWERING 2 (ddf2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: gibberellin biosynthetic process, cell growth, regulation of timing of transition from vegetative to reproductive phase; EXPRESSED IN: stem, rosette leaf, root; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: DDF1 (DWARF AND DELAYED FLOWERING 1); DNA binding / sequence-specific DNA binding / transcription factor (TAIR:AT1G12610.1); Has 3462 Blast hits to 3458 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3458; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G63030.1p  transcript_id AT1G63030.1  protein_id AT1G63030.1p  transcript_id AT1G63030.1  
At1g63030	chr1:023367603	0.0	C/23367603-23368148	AT1G63030.2  CDS  gene_syn DWARF AND DELAYED FLOWERING 2, F16P17.20, F16P17_20, ddf2  gene ddf2  function encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF2). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. Overexpression of this gene results in the reduction of gibberellic acid biosynthesis. This gene is expressed in all tissues examined, but most abundantly expressed in rosette leaves and stems. Overexpression of DDF1, a putative paralog of this gene, also reduces gibberellic acid biosynthesis and makes the plants more tolerant to high-salinity levels.  go_process gibberellin biosynthetic process|GO:0009686|14871311|IMP  go_process cell growth|GO:0016049|14871311|IMP  go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|14871311|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ddf2 (DWARF AND DELAYED FLOWERING 2); DNA binding / transcription factor  note DWARF AND DELAYED FLOWERING 2 (ddf2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: gibberellin biosynthetic process, cell growth, regulation of timing of transition from vegetative to reproductive phase; EXPRESSED IN: stem, rosette leaf, root; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: DDF1 (DWARF AND DELAYED FLOWERING 1); DNA binding / sequence-specific DNA binding / transcription factor (TAIR:AT1G12610.1); Has 3462 Blast hits to 3458 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3458; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G63030.2p  transcript_id AT1G63030.2  protein_id AT1G63030.2p  transcript_id AT1G63030.2  
At1g63040	chr1:023371327	0.0	W/23371327-23372073	AT1G63040.1  pseudogenic_transcript  pseudo  gene_syn F16M19.1, F16M19_1  function a pseudogene member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The translated product contains one AP2 domain. There are 17 members in this subfamily including TINY.  note pseudogene, DRE binding protein, similar to GI:3738224 from (Arabidopsis thaliana) (Plant Cell 10 (8), 1391-1406 (1998)); blastp match of 38% identity and 3.9e-24 P-value to GP|18535580|gb|AAK57551.1||AY034473 putative transcriptional activator CBF1 {Lycopersicon esculentum}  
At1g63050	chr1:023377874	0.0	C/23377874-23378178,23377741-23377796,23377414-23377634,23376922-23377330,23376755-23376840,23376494-23376557,23376280-23376398,23376061-23376198	AT1G63050.1  CDS  gene_syn F16M19.14, F16M19_14  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function acyltransferase activity|GO:0008415||ISS  product membrane bound O-acyl transferase (MBOAT) family protein  note membrane bound O-acyl transferase (MBOAT) family protein; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Membrane bound O-acyl transferase, MBOAT (InterPro:IPR004299); BEST Arabidopsis thaliana protein match is: membrane bound O-acyl transferase (MBOAT) family protein (TAIR:AT1G12640.1); Has 817 Blast hits to 815 proteins in 154 species: Archae - 0; Bacteria - 65; Metazoa - 540; Fungi - 94; Plants - 27; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).  protein_id AT1G63050.1p  transcript_id AT1G63050.1  protein_id AT1G63050.1p  transcript_id AT1G63050.1  
At1g63055	chr1:023379739	0.0	W/23379739-23379982,23380360-23380445	AT1G63055.1  CDS  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63057.2); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G63055.1p  transcript_id AT1G63055.1  protein_id AT1G63055.1p  transcript_id AT1G63055.1  
At1g63057	chr1:023379739	0.0	W/23379739-23379816,23382320-23382494,23382892-23382989	AT1G63057.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63055.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G63057.2p  transcript_id AT1G63057.2  protein_id AT1G63057.2p  transcript_id AT1G63057.2  
At1g63057	chr1:023382242	0.0	W/23382242-23382494,23382892-23382989	AT1G63057.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63055.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G63057.1p  transcript_id AT1G63057.1  protein_id AT1G63057.1p  transcript_id AT1G63057.1  
At1g63060	chr1:023384105	0.0	W/23384105-23384122,23384202-23384290,23384382-23384666,23384833-23384887	AT1G63060.1  CDS  gene_syn F16M19.2, F16M19_2  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G07330.1); Has 18 Blast hits to 18 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G63060.1p  transcript_id AT1G63060.1  protein_id AT1G63060.1p  transcript_id AT1G63060.1  
At1g63070	chr1:023386122	0.0	C/23386122-23387167,23385324-23386050	AT1G63070.1  CDS  gene_syn F16M19.15, F16M19_15  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G63080.1); Has 26377 Blast hits to 6189 proteins in 192 species: Archae - 5; Bacteria - 20; Metazoa - 860; Fungi - 691; Plants - 23407; Viruses - 0; Other Eukaryotes - 1394 (source: NCBI BLink).  protein_id AT1G63070.1p  transcript_id AT1G63070.1  protein_id AT1G63070.1p  transcript_id AT1G63070.1  
At1g63080	chr1:023388884	0.0	C/23388884-23390728	AT1G63080.1  CDS  gene_syn F16M19.17, F16M19_17  function Transacting siRNA generating locus. Is targeted by TAS2-derived ta-siR2140 for cleavage.  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62930.1); Has 28576 Blast hits to 6271 proteins in 191 species: Archae - 4; Bacteria - 30; Metazoa - 1134; Fungi - 818; Plants - 24920; Viruses - 0; Other Eukaryotes - 1670 (source: NCBI BLink).  protein_id AT1G63080.1p  transcript_id AT1G63080.1  protein_id AT1G63080.1p  transcript_id AT1G63080.1  
At1g63090	chr1:023392283	0.0	C/23392283-23392609,23391982-23392100,23391283-23391706	AT1G63090.1  CDS  gene_syn AtPP2-A11, F16M19.16, F16M19_16, Phloem protein 2-A11  gene AtPP2-A11  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function carbohydrate binding|GO:0030246|12529520|ISS  product AtPP2-A11 (Phloem protein 2-A11); carbohydrate binding  note Phloem protein 2-A11 (AtPP2-A11); FUNCTIONS IN: carbohydrate binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: AtPP2-A12 (Phloem protein 2-A12); carbohydrate binding (TAIR:AT1G12710.1); Has 257 Blast hits to 255 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 257; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G63090.1p  transcript_id AT1G63090.1  protein_id AT1G63090.1p  transcript_id AT1G63090.1  
At1g63100	chr1:023399391	0.0	C/23399391-23401367	AT1G63100.1  CDS  gene_syn F16M19.21, F16M19_21  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product scarecrow transcription factor family protein  note scarecrow transcription factor family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: SCR (SCARECROW); protein binding / protein homodimerization/ sequence-specific DNA binding / transcription factor (TAIR:AT3G54220.1); Has 1410 Blast hits to 1379 proteins in 196 species: Archae - 0; Bacteria - 4; Metazoa - 20; Fungi - 0; Plants - 1338; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT1G63100.1p  transcript_id AT1G63100.1  protein_id AT1G63100.1p  transcript_id AT1G63100.1  
At1g63105	chr1:023404141	0.0	W/23404141-23404509	AT1G63105.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 36 Blast hits to 36 proteins in 20 species: Archae - 0; Bacteria - 19; Metazoa - 2; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G63105.1p  transcript_id AT1G63105.1  protein_id AT1G63105.1p  transcript_id AT1G63105.1  
At1g63110	chr1:023404870	0.0	W/23404870-23405023,23405113-23405160,23405238-23405298,23405413-23405445,23405638-23405762,23405878-23406012,23406093-23406169,23406248-23406504,23406670-23406726,23406830-23406998,23407104-23407161,23407236-23407321,23407416-23407472,23407665-23407757	AT1G63110.1  CDS  gene_syn F16M19.3, F16M19_3  go_component plasma membrane|GO:0005886|17317660|IDA  go_process GPI anchor biosynthetic process|GO:0006506||IEA  product cell division cycle protein-related  note cell division cycle protein-related; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GPI transamidase subunit PIG-U (InterPro:IPR009600); BEST Arabidopsis thaliana protein match is: cell division cycle protein-related (TAIR:AT1G12730.1); Has 295 Blast hits to 291 proteins in 120 species: Archae - 0; Bacteria - 1; Metazoa - 138; Fungi - 86; Plants - 40; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G63110.1p  transcript_id AT1G63110.1  protein_id AT1G63110.1p  transcript_id AT1G63110.1  
At1g63110	chr1:023405145	0.0	W/23405145-23405160,23405238-23405298,23405413-23405445,23405638-23405762,23405878-23406012,23406093-23406169,23406248-23406504,23406670-23406726,23406830-23406998,23407104-23407161,23407236-23407321,23407416-23407472,23407665-23407757	AT1G63110.3  CDS  gene_syn F16M19.3, F16M19_3  go_component plasma membrane|GO:0005886|17317660|IDA  go_process GPI anchor biosynthetic process|GO:0006506||IEA  product cell division cycle protein-related  note cell division cycle protein-related; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GPI transamidase subunit PIG-U (InterPro:IPR009600); BEST Arabidopsis thaliana protein match is: cell division cycle protein-related (TAIR:AT1G12730.1); Has 289 Blast hits to 287 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 86; Plants - 40; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT1G63110.3p  transcript_id AT1G63110.3  protein_id AT1G63110.3p  transcript_id AT1G63110.3  
At1g63110	chr1:023405155	0.0	W/23405155-23405160,23405238-23405298,23405413-23405445,23405658-23405762,23405878-23406012,23406093-23406169,23406248-23406504,23406670-23406726,23406830-23406998,23407104-23407161,23407236-23407321,23407416-23407472,23407665-23407757	AT1G63110.2  CDS  gene_syn F16M19.3, F16M19_3  go_component plasma membrane|GO:0005886|17317660|IDA  go_process GPI anchor biosynthetic process|GO:0006506||IEA  product cell division cycle protein-related  note cell division cycle protein-related; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GPI transamidase subunit PIG-U (InterPro:IPR009600); BEST Arabidopsis thaliana protein match is: cell division cycle protein-related (TAIR:AT1G12730.2); Has 250 Blast hits to 248 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 79; Plants - 31; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT1G63110.2p  transcript_id AT1G63110.2  protein_id AT1G63110.2p  transcript_id AT1G63110.2  
At1g63120	chr1:023410451	0.0	C/23410451-23410725,23409748-23409911,23409471-23409634,23409054-23409404	AT1G63120.1  CDS  gene_syn ATRBL2, Arabidopsis thaliana Rhomboid-like 2, F16M19.4, F16M19_4  gene ATRBL2  function AtRBL2 has been identified as a rhomboid protein involved in regulated intramembrane proteolysis (RIP). The enzyme has the proteolytic activity and substrate specificity comparable to the Drosophila Rho-1 protein.  go_component Golgi apparatus|GO:0005794|16223493|IDA  go_function serine-type endopeptidase activity|GO:0004252|16223493|IDA  product ATRBL2 (Arabidopsis thaliana Rhomboid-like 2); serine-type endopeptidase  note Arabidopsis thaliana Rhomboid-like 2 (ATRBL2); FUNCTIONS IN: serine-type endopeptidase activity; LOCATED IN: Golgi apparatus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: ATRBL6 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 6) (TAIR:AT1G12750.2); Has 4398 Blast hits to 4398 proteins in 1071 species: Archae - 89; Bacteria - 2371; Metazoa - 472; Fungi - 108; Plants - 205; Viruses - 0; Other Eukaryotes - 1153 (source: NCBI BLink).  protein_id AT1G63120.1p  transcript_id AT1G63120.1  protein_id AT1G63120.1p  transcript_id AT1G63120.1  
At1g63130	chr1:023412854	0.0	W/23412854-23414746	AT1G63130.1  CDS  gene_syn F16M19.5, F16M19_5  function Transacting siRNA generating locus. Its derived siR9as targets AT1G62930 for cleavage. Itself is targeted by TAS2-derived ta-siR2140 for cleavage.  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62930.1); Has 29031 Blast hits to 6242 proteins in 193 species: Archae - 7; Bacteria - 24; Metazoa - 1154; Fungi - 832; Plants - 25340; Viruses - 0; Other Eukaryotes - 1674 (source: NCBI BLink).  protein_id AT1G63130.1p  transcript_id AT1G63130.1  protein_id AT1G63130.1p  transcript_id AT1G63130.1  
At1g63140	chr1:023417517	0.0	W/23417517-23417986,23418073-23418383,23418469-23418533,23418576-23418875	AT1G63140.2  CDS  gene_syn F16M19.12, F16M19_12  go_function methyltransferase activity|GO:0008168||IEA  go_function O-methyltransferase activity|GO:0008171||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_component cytosol|GO:0005829|9484457|TAS  product O-methyltransferase, putative  note O-methyltransferase, putative; FUNCTIONS IN: methyltransferase activity, protein dimerization activity, O-methyltransferase activity; LOCATED IN: cytosol; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family 2 protein (TAIR:AT1G77520.1); Has 2206 Blast hits to 2204 proteins in 427 species: Archae - 0; Bacteria - 654; Metazoa - 83; Fungi - 443; Plants - 924; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).  protein_id AT1G63140.2p  transcript_id AT1G63140.2  protein_id AT1G63140.2p  transcript_id AT1G63140.2  
At1g63140	chr1:023417517	0.0	W/23417517-23417986,23418073-23418383,23418469-23418548	AT1G63140.1  CDS  gene_syn F16M19.12, F16M19_12  go_function methyltransferase activity|GO:0008168||IEA  go_function O-methyltransferase activity|GO:0008171||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_component cytosol|GO:0005829|9484457|TAS  product O-methyltransferase, putative  note O-methyltransferase, putative; FUNCTIONS IN: methyltransferase activity, protein dimerization activity, O-methyltransferase activity; LOCATED IN: cytosol; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077); BEST Arabidopsis thaliana protein match is: O-methyltransferase family 2 protein (TAIR:AT1G77520.1); Has 1229 Blast hits to 1228 proteins in 260 species: Archae - 0; Bacteria - 289; Metazoa - 21; Fungi - 8; Plants - 881; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G63140.1p  transcript_id AT1G63140.1  protein_id AT1G63140.1p  transcript_id AT1G63140.1  
At1g63150	chr1:023419399	0.0	W/23419399-23421288	AT1G63150.1  CDS  gene_syn F16M19.13, F16M19_13  function Transacting siRNA generating locus.  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; EXPRESSED IN: shoot apex, leaf whorl, embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G62910.1); Has 27469 Blast hits to 6197 proteins in 193 species: Archae - 5; Bacteria - 16; Metazoa - 975; Fungi - 830; Plants - 24114; Viruses - 0; Other Eukaryotes - 1529 (source: NCBI BLink).  protein_id AT1G63150.1p  transcript_id AT1G63150.1  protein_id AT1G63150.1p  transcript_id AT1G63150.1  
At1g63160	chr1:023423610	0.0	C/23423610-23423771,23423229-23423335,23423036-23423137,23422743-23422938,23422524-23422652,23422249-23422443,23422068-23422178	AT1G63160.1  CDS  gene_syn F16M19.6, F16M19_6  go_component DNA replication factor C complex|GO:0005663||IEA  go_process DNA replication|GO:0006260||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA clamp loader activity|GO:0003689||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component DNA replication factor C complex|GO:0005663||ISS  go_function ATPase activity|GO:0016887||ISS  product replication factor C 40 kDa, putative  note replication factor C 40 kDa, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA replication; LOCATED IN: DNA replication factor C complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Replication factor C (InterPro:IPR013748), DNA polymerase III clamp loader subunit, C-terminal (InterPro:IPR008921); BEST Arabidopsis thaliana protein match is: emb1968 (embryo defective 1968); ATP binding / ATPase/ DNA binding / DNA clamp loader/ nucleoside-triphosphatase/ nucleotide binding (TAIR:AT1G21690.1); Has 11789 Blast hits to 11755 proteins in 1581 species: Archae - 422; Bacteria - 5080; Metazoa - 744; Fungi - 624; Plants - 180; Viruses - 65; Other Eukaryotes - 4674 (source: NCBI BLink).  protein_id AT1G63160.1p  transcript_id AT1G63160.1  protein_id AT1G63160.1p  transcript_id AT1G63160.1  
At1g63170	chr1:023425574	0.0	W/23425574-23426115,23426207-23426326,23426419-23426551,23426632-23426805,23426897-23427073	AT1G63170.1  CDS  gene_syn F16M19.7, F16M19_7  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / ubiquitin-protein ligase/ zinc ion binding (TAIR:AT1G12760.1); Has 6437 Blast hits to 6421 proteins in 214 species: Archae - 0; Bacteria - 6; Metazoa - 2231; Fungi - 482; Plants - 2717; Viruses - 23; Other Eukaryotes - 978 (source: NCBI BLink).  protein_id AT1G63170.1p  transcript_id AT1G63170.1  protein_id AT1G63170.1p  transcript_id AT1G63170.1  
At1g63180	chr1:023429187	0.0	C/23429187-23429384,23429013-23429062,23428787-23428922,23428596-23428697,23428264-23428491,23428089-23428170,23427904-23427986,23427714-23427805,23427559-23427643	AT1G63180.1  CDS  gene_syn F16M19.8, F16M19_8, UDP-D-glucose/UDP-D-galactose 4-epimerase 3, UGE3  gene UGE3  function Encodes a protein with UDP-D-glucose 4-epimerase activity. Involved in pollen development.  go_process pollen development|GO:0009555|17496119|IMP  go_function UDP-glucose 4-epimerase activity|GO:0003978|16644739|IDA  go_function UDP-glucose 4-epimerase activity|GO:0003978|16644739|IGI  go_function UDP-glucose 4-epimerase activity|GO:0003978|17496119|IDA  go_function protein dimerization activity|GO:0046983|16644739|IPI  product UGE3 (UDP-D-glucose/UDP-D-galactose 4-epimerase 3); UDP-glucose 4-epimerase/ protein dimerization  note UDP-D-glucose/UDP-D-galactose 4-epimerase 3 (UGE3); FUNCTIONS IN: UDP-glucose 4-epimerase activity, protein dimerization activity; INVOLVED IN: pollen development; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886); BEST Arabidopsis thaliana protein match is: UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1); UDP-glucose 4-epimerase/ protein dimerization (TAIR:AT1G12780.1); Has 29213 Blast hits to 29209 proteins in 1702 species: Archae - 479; Bacteria - 13789; Metazoa - 555; Fungi - 334; Plants - 627; Viruses - 32; Other Eukaryotes - 13397 (source: NCBI BLink).  protein_id AT1G63180.1p  transcript_id AT1G63180.1  protein_id AT1G63180.1p  transcript_id AT1G63180.1  
At1g63190	chr1:023431835	0.0	W/23431835-23431850,23431933-23432093,23432176-23432328,23432416-23432605,23432795-23432859,23432910-23433002	AT1G63190.1  CDS  gene_syn F16M19.9, F16M19_9  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63200.1); Has 24 Blast hits to 24 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G63190.1p  transcript_id AT1G63190.1  protein_id AT1G63190.1p  transcript_id AT1G63190.1  
At1g63200	chr1:023434582	0.0	C/23434582-23434600,23434344-23434501,23433925-23434270,23433741-23433831,23433630-23433666	AT1G63200.1  CDS  gene_syn F16M19.10, F16M19_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63190.1); Has 34 Blast hits to 34 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G63200.1p  transcript_id AT1G63200.1  protein_id AT1G63200.1p  transcript_id AT1G63200.1  
At1g63205	chr1:023438659	0.0	C/23438659-23438677,23438419-23438576,23438183-23438341,23437901-23438093,23437689-23437729	AT1G63205.1  CDS  gene_syn F16M19.11, F16M19_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63200.1); Has 19 Blast hits to 19 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G63205.1p  transcript_id AT1G63205.1  protein_id AT1G63205.1p  transcript_id AT1G63205.1  
At1g63206	chr1:023439642	0.0	W/23439642-23439791,23439891-23440052,23440141-23440336,23440510-23440543,23440641-23440650	AT1G63206.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63190.1); Has 22 Blast hits to 22 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G63206.1p  transcript_id AT1G63206.1  protein_id AT1G63206.1p  transcript_id AT1G63206.1  
At1g63210	chr1:023443688	0.0	W/23443688-23446963,23447037-23447354	AT1G63210.1  CDS  gene_syn F16M19.22, F16M19_22  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_process regulation of transcription from RNA polymerase II promoter|GO:0006357||IEA  go_function transcription elongation regulator activity|GO:0003711||IEA  go_function RNA binding|GO:0003723||IEA  go_function protein binding|GO:0005515||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  product RNA binding / hydrolase, acting on ester bonds / protein binding / transcription elongation regulator  note RNA binding / hydrolase, acting on ester bonds / protein binding / transcription elongation regulator; FUNCTIONS IN: transcription elongation regulator activity, protein binding, hydrolase activity, acting on ester bonds, RNA binding; INVOLVED IN: regulation of transcription from RNA polymerase II promoter, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; EXPRESSED IN: sperm cell, flower, cultured cell; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Resolvase, RNase H-like fold (InterPro:IPR006641), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), SH2 motif (InterPro:IPR000980), S1, RNA binding (InterPro:IPR003029), Transcription elongation factor Spt6 (InterPro:IPR017072); BEST Arabidopsis thaliana protein match is: GTB1; RNA binding / hydrolase, acting on ester bonds / transcription elongation regulator (TAIR:AT1G65440.2); Has 2133 Blast hits to 2087 proteins in 1013 species: Archae - 14; Bacteria - 1652; Metazoa - 178; Fungi - 101; Plants - 33; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink).  protein_id AT1G63210.1p  transcript_id AT1G63210.1  protein_id AT1G63210.1p  transcript_id AT1G63210.1  
At1g63220	chr1:023449017	0.0	W/23449017-23449083,23449578-23449643,23449754-23449880,23449966-23450080,23450176-23450244	AT1G63220.1  CDS  gene_syn F9N12.16, F9N12_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT3G55470.2); Has 1177 Blast hits to 1089 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 482; Fungi - 104; Plants - 481; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT1G63220.1p  transcript_id AT1G63220.1  protein_id AT1G63220.1p  transcript_id AT1G63220.1  
At1g63220	chr1:023449017	0.0	W/23449017-23449083,23449620-23449643,23449754-23449880,23449966-23450080,23450176-23450244	AT1G63220.2  CDS  gene_syn F9N12.16, F9N12_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT3G55470.2); Has 173 Blast hits to 173 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 4; Plants - 157; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G63220.2p  transcript_id AT1G63220.2  protein_id AT1G63220.2p  transcript_id AT1G63220.2  
At1g63230	chr1:023451144	0.0	W/23451144-23452091,23452178-23452201	AT1G63230.1  CDS  gene_syn F9N12.15, F9N12_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G63630.1); Has 25150 Blast hits to 5946 proteins in 177 species: Archae - 3; Bacteria - 22; Metazoa - 685; Fungi - 429; Plants - 23072; Viruses - 0; Other Eukaryotes - 939 (source: NCBI BLink).  protein_id AT1G63230.1p  transcript_id AT1G63230.1  protein_id AT1G63230.1p  transcript_id AT1G63230.1  
At1g63240	chr1:023458443	0.0	C/23458443-23458550,23458010-23458129,23457826-23457933,23457628-23457750,23457451-23457540,23457304-23457370,23456188-23457218	AT1G63240.1  CDS  gene_syn F9N12.14, F9N12_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; Has 407 Blast hits to 359 proteins in 82 species: Archae - 5; Bacteria - 7; Metazoa - 141; Fungi - 30; Plants - 22; Viruses - 2; Other Eukaryotes - 200 (source: NCBI BLink).  protein_id AT1G63240.1p  transcript_id AT1G63240.1  protein_id AT1G63240.1p  transcript_id AT1G63240.1  
At1g63245	chr1:023460529	0.0	C/23460529-23460771	AT1G63245.1  CDS  gene_syn CLAVATA3/ESR-RELATED 14, CLE14  gene CLE14  function Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can not replace CLV3 function in vivo.  go_component apoplast|GO:0048046|11457943|RCA  go_process signal transduction|GO:0007165||ISS  go_function receptor binding|GO:0005102||ISS  go_function protein binding|GO:0005515|11457943|ISS  product CLE14 (CLAVATA3/ESR-RELATED 14); protein binding / receptor binding  note CLAVATA3/ESR-RELATED 14 (CLE14); FUNCTIONS IN: protein binding, receptor binding; INVOLVED IN: signal transduction; LOCATED IN: apoplast; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G63245.1p  transcript_id AT1G63245.1  protein_id AT1G63245.1p  transcript_id AT1G63245.1  
At1g63250	chr1:023465466	0.0	C/23465466-23466451,23465284-23465390,23465123-23465178,23464815-23465042,23464516-23464722,23464337-23464423,23464160-23464255,23463863-23464078,23463595-23463777,23463284-23463514	AT1G63250.1  CDS  gene_syn F9N12.13, F9N12_13  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD box RNA helicase, putative  note DEAD box RNA helicase, putative; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase, putative (TAIR:AT2G07750.1); Has 26042 Blast hits to 25602 proteins in 1682 species: Archae - 341; Bacteria - 10460; Metazoa - 4867; Fungi - 3230; Plants - 1362; Viruses - 8; Other Eukaryotes - 5774 (source: NCBI BLink).  protein_id AT1G63250.1p  transcript_id AT1G63250.1  protein_id AT1G63250.1p  transcript_id AT1G63250.1  
At1g63260	chr1:023468892	0.0	C/23468892-23468945,23468516-23468628,23468340-23468394,23468191-23468246,23468065-23468112,23467939-23467987,23467773-23467856,23467626-23467693,23467411-23467536,23467105-23467306	AT1G63260.1  CDS  gene_syn F9N12.12, F9N12_12, TET10, TETRASPANIN10  gene TET10  function Member of TETRASPANIN family  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process aging|GO:0007568||ISS  product TET10 (TETRASPANIN10)  note TETRASPANIN10 (TET10); INVOLVED IN: aging; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499), Tetraspanin, subgroup (InterPro:IPR000301); BEST Arabidopsis thaliana protein match is: TET3 (TETRASPANIN3) (TAIR:AT3G45600.1); Has 550 Blast hits to 549 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 328; Fungi - 0; Plants - 211; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G63260.1p  transcript_id AT1G63260.1  protein_id AT1G63260.1p  transcript_id AT1G63260.1  
At1g63260	chr1:023468892	0.0	C/23468892-23468945,23468516-23468628,23468340-23468394,23468191-23468246,23468065-23468112,23467939-23467987,23467773-23467856,23467626-23467693,23467411-23467536,23467173-23467306,23466994-23467040	AT1G63260.3  CDS  gene_syn F9N12.12, F9N12_12, TET10, TETRASPANIN10  gene TET10  function Member of TETRASPANIN family  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process aging|GO:0007568||ISS  product TET10 (TETRASPANIN10)  note TETRASPANIN10 (TET10); INVOLVED IN: aging; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499), Tetraspanin, subgroup (InterPro:IPR000301); BEST Arabidopsis thaliana protein match is: TET3 (TETRASPANIN3) (TAIR:AT3G45600.1); Has 550 Blast hits to 549 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 328; Fungi - 0; Plants - 211; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G63260.3p  transcript_id AT1G63260.3  protein_id AT1G63260.3p  transcript_id AT1G63260.3  
At1g63260	chr1:023468892	0.0	C/23468892-23468945,23468516-23468628,23468340-23468394,23468191-23468246,23468065-23468112,23467939-23467987,23467773-23467856,23467626-23467693,23467411-23467536,23467249-23467306,23466975-23467040	AT1G63260.2  CDS  gene_syn F9N12.12, F9N12_12, TET10, TETRASPANIN10  gene TET10  function Member of TETRASPANIN family  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process aging|GO:0007568||ISS  product TET10 (TETRASPANIN10)  note TETRASPANIN10 (TET10); INVOLVED IN: aging; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499), Tetraspanin, subgroup (InterPro:IPR000301); BEST Arabidopsis thaliana protein match is: TET8 (TETRASPANIN8) (TAIR:AT2G23810.1); Has 550 Blast hits to 549 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 328; Fungi - 0; Plants - 211; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G63260.2p  transcript_id AT1G63260.2  protein_id AT1G63260.2p  transcript_id AT1G63260.2  
At1g63270	chr1:023469664	0.0	C/23469664-23470353	AT1G63270.1  CDS  gene_syn ATNAP10, F9N12.11, F9N12_11  gene ATNAP10  function Encodes a member of a heterogenous group of non-intrinsic ATP-binding cassette (ABC) proteins. Members of this group bear no close resemblance to each other nor to representatives of specific ABC protein subfamilies from other organisms. This grouping is arbitrary and will likely change upon acquisition of further data.  go_process transport|GO:0006810|11346655|ISS  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  product ATNAP10; transporter  note ATNAP10; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, haem export, CcmA (InterPro:IPR005895), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATNAP14; transporter (TAIR:AT5G14100.1); Has 207656 Blast hits to 195357 proteins in 2465 species: Archae - 3896; Bacteria - 149167; Metazoa - 6475; Fungi - 2438; Plants - 2085; Viruses - 13; Other Eukaryotes - 43582 (source: NCBI BLink).  protein_id AT1G63270.1p  transcript_id AT1G63270.1  protein_id AT1G63270.1p  transcript_id AT1G63270.1  
At1g63280	chr1:023471343	0.0	W/23471343-23471705	AT1G63280.1  CDS  gene_syn F9N12.10, F9N12_10  go_function serine-type endopeptidase inhibitor activity|GO:0004867||IEA  go_process biological_process|GO:0008150||ND  product serpin-related / serine protease inhibitor-related  note serpin-related / serine protease inhibitor-related; FUNCTIONS IN: serine-type endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protease inhibitor I4, serpin, plant (InterPro:IPR015554), Protease inhibitor I4, serpin (InterPro:IPR000215); BEST Arabidopsis thaliana protein match is: serpin family protein / serine protease inhibitor family protein (TAIR:AT2G14540.1); Has 2751 Blast hits to 2739 proteins in 236 species: Archae - 41; Bacteria - 166; Metazoa - 2215; Fungi - 0; Plants - 187; Viruses - 39; Other Eukaryotes - 103 (source: NCBI BLink).  protein_id AT1G63280.1p  transcript_id AT1G63280.1  protein_id AT1G63280.1p  transcript_id AT1G63280.1  
At1g63290	chr1:023473471	0.0	C/23473471-23473590,23473160-23473164,23473012-23473074,23472808-23472914,23472620-23472717,23472452-23472544,23472325-23472366,23472095-23472250	AT1G63290.1  CDS  gene_syn F9N12.9, F9N12_9  go_component plasma membrane|GO:0005886|15060130|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function ribulose-phosphate 3-epimerase activity|GO:0004750||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function ribulose-phosphate 3-epimerase activity|GO:0004750||ISS  product ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative  note ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative; FUNCTIONS IN: ribulose-phosphate 3-epimerase activity, catalytic activity; INVOLVED IN: carbohydrate metabolic process, metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate 3-epimerase (InterPro:IPR000056), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative (TAIR:AT3G01850.2); Has 6133 Blast hits to 6130 proteins in 1420 species: Archae - 32; Bacteria - 2852; Metazoa - 158; Fungi - 90; Plants - 83; Viruses - 0; Other Eukaryotes - 2918 (source: NCBI BLink).  protein_id AT1G63290.1p  transcript_id AT1G63290.1  protein_id AT1G63290.1p  transcript_id AT1G63290.1  
At1g63300	chr1:023482193	0.0	W/23482193-23482270,23482464-23482667,23482745-23482867,23483007-23483047,23483138-23483246,23483338-23485527,23485614-23485736,23485846-23486067	AT1G63300.1  CDS  gene_syn F9N12.8, F9N12_8  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41140.1); Has 188015 Blast hits to 86460 proteins in 2357 species: Archae - 2007; Bacteria - 27497; Metazoa - 84634; Fungi - 13206; Plants - 6675; Viruses - 1028; Other Eukaryotes - 52968 (source: NCBI BLink).  protein_id AT1G63300.1p  transcript_id AT1G63300.1  protein_id AT1G63300.1p  transcript_id AT1G63300.1  
At1g63310	chr1:023486580	0.0	C/23486580-23487044	AT1G63310.1  CDS  gene_syn F9N12.7, F9N12_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: oxidoreductase, acting on NADH or NADPH (TAIR:AT1G75260.1); Has 35 Blast hits to 35 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G63310.1p  transcript_id AT1G63310.1  protein_id AT1G63310.1p  transcript_id AT1G63310.1  
At1g63320	chr1:023489315	0.0	C/23489315-23489530,23488884-23489237	AT1G63320.1  CDS  gene_syn F9N12.6, F9N12_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G63080.1); Has 18630 Blast hits to 4827 proteins in 155 species: Archae - 6; Bacteria - 20; Metazoa - 191; Fungi - 201; Plants - 17695; Viruses - 0; Other Eukaryotes - 517 (source: NCBI BLink).  protein_id AT1G63320.1p  transcript_id AT1G63320.1  protein_id AT1G63320.1p  transcript_id AT1G63320.1  
At1g63330	chr1:023489628	0.0	W/23489628-23489684,23489801-23489936,23490036-23491519	AT1G63330.1  CDS  gene_syn F9N12.5, F9N12_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G62590.1); Has 26661 Blast hits to 6253 proteins in 186 species: Archae - 4; Bacteria - 22; Metazoa - 1017; Fungi - 724; Plants - 23421; Viruses - 0; Other Eukaryotes - 1473 (source: NCBI BLink).  protein_id AT1G63330.1p  transcript_id AT1G63330.1  protein_id AT1G63330.1p  transcript_id AT1G63330.1  
At1g63340	chr1:023493467	0.0	C/23493467-23494019,23493028-23493105,23492824-23492963,23492659-23492741,23492420-23492555,23492267-23492329,23491882-23492103	AT1G63340.1  CDS  gene_syn F9N12.4, F9N12_4  go_function flavin-containing monooxygenase activity|GO:0004499||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function FAD binding|GO:0050660||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function monooxygenase activity|GO:0004497||ISS  product FAD binding / NADP or NADPH binding / electron carrier/ flavin-containing monooxygenase/ monooxygenase  note FAD binding / NADP or NADPH binding / electron carrier/ flavin-containing monooxygenase/ monooxygenase; FUNCTIONS IN: NADP or NADPH binding, electron carrier activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960), HI0933-like protein (InterPro:IPR004792), Adrenodoxin reductase (InterPro:IPR000759); BEST Arabidopsis thaliana protein match is: flavin-containing monooxygenase family protein / FMO family protein (TAIR:AT1G62580.1); Has 7137 Blast hits to 6739 proteins in 928 species: Archae - 40; Bacteria - 2913; Metazoa - 1040; Fungi - 564; Plants - 297; Viruses - 0; Other Eukaryotes - 2283 (source: NCBI BLink).  protein_id AT1G63340.1p  transcript_id AT1G63340.1  protein_id AT1G63340.1p  transcript_id AT1G63340.1  
At1g63350	chr1:023494935	0.0	C/23494935-23497631	AT1G63350.1  CDS  gene_syn F9N12.3, F9N12_3  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative  note disease resistance protein (CC-NBS-LRR class), putative; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT1G62630.1); Has 13057 Blast hits to 11679 proteins in 523 species: Archae - 14; Bacteria - 692; Metazoa - 2577; Fungi - 137; Plants - 9275; Viruses - 4; Other Eukaryotes - 358 (source: NCBI BLink).  protein_id AT1G63350.1p  transcript_id AT1G63350.1  protein_id AT1G63350.1p  transcript_id AT1G63350.1  
At1g63360	chr1:023499515	0.0	C/23499515-23502169	AT1G63360.1  CDS  gene_syn F2K11.26, F2K11_26  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative  note disease resistance protein (CC-NBS-LRR class), putative; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT1G62630.1); Has 12481 Blast hits to 10957 proteins in 477 species: Archae - 28; Bacteria - 911; Metazoa - 2251; Fungi - 142; Plants - 8844; Viruses - 6; Other Eukaryotes - 299 (source: NCBI BLink).  protein_id AT1G63360.1p  transcript_id AT1G63360.1  protein_id AT1G63360.1p  transcript_id AT1G63360.1  
At1g63370	chr1:023504803	0.0	C/23504803-23505358,23504325-23504395,23504106-23504258,23503950-23504032,23503723-23503858,23503477-23503650,23503205-23503384	AT1G63370.1  CDS  gene_syn F2K11.25, F2K11_25  go_function flavin-containing monooxygenase activity|GO:0004499||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function FAD binding|GO:0050660||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function monooxygenase activity|GO:0004497||ISS  product flavin-containing monooxygenase family protein / FMO family protein  note flavin-containing monooxygenase family protein / FMO family protein; FUNCTIONS IN: electron carrier activity, NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Adrenodoxin reductase (InterPro:IPR000759); BEST Arabidopsis thaliana protein match is: flavin-containing monooxygenase family protein / FMO family protein (TAIR:AT1G62620.1); Has 10597 Blast hits to 10255 proteins in 1110 species: Archae - 77; Bacteria - 4837; Metazoa - 1012; Fungi - 925; Plants - 450; Viruses - 0; Other Eukaryotes - 3296 (source: NCBI BLink).  protein_id AT1G63370.1p  transcript_id AT1G63370.1  protein_id AT1G63370.1p  transcript_id AT1G63370.1  
At1g63380	chr1:023505582	0.0	W/23505582-23505599,23505674-23506504	AT1G63380.1  CDS  gene_syn F2K11.24, F2K11_24  go_process metabolic process|GO:0008152||IEA  go_process non-phosphorylated glucose catabolic process|GO:0019595||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product binding / catalytic/ oxidoreductase  note binding / catalytic/ oxidoreductase; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process, non-phosphorylated glucose catabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT1G62610.1); Has 86858 Blast hits to 86708 proteins in 2321 species: Archae - 487; Bacteria - 46160; Metazoa - 6582; Fungi - 4689; Plants - 1867; Viruses - 2; Other Eukaryotes - 27071 (source: NCBI BLink).  protein_id AT1G63380.1p  transcript_id AT1G63380.1  protein_id AT1G63380.1p  transcript_id AT1G63380.1  
At1g63390	chr1:023506634	0.0	C/23506634-23506967,23506507-23506550	AT1G63390.1  CDS  gene_syn F2K11.23, F2K11_23  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function monooxygenase activity|GO:0004497||ISS  product flavin-containing monooxygenase-related / FMO-related  note flavin-containing monooxygenase-related / FMO-related; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, monooxygenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FAD dependent oxidoreductase (InterPro:IPR006076), Adrenodoxin reductase (InterPro:IPR000759); BEST Arabidopsis thaliana protein match is: flavin-containing monooxygenase family protein / FMO family protein (TAIR:AT1G62600.1); Has 4669 Blast hits to 4665 proteins in 780 species: Archae - 35; Bacteria - 1832; Metazoa - 613; Fungi - 279; Plants - 200; Viruses - 0; Other Eukaryotes - 1710 (source: NCBI BLink).  protein_id AT1G63390.1p  transcript_id AT1G63390.1  protein_id AT1G63390.1p  transcript_id AT1G63390.1  
At1g63400	chr1:023507320	0.0	W/23507320-23509053	AT1G63400.1  CDS  gene_syn F2K11.22, F2K11_22  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G62590.1); Has 28623 Blast hits to 6213 proteins in 189 species: Archae - 5; Bacteria - 24; Metazoa - 1051; Fungi - 812; Plants - 25126; Viruses - 0; Other Eukaryotes - 1605 (source: NCBI BLink).  protein_id AT1G63400.1p  transcript_id AT1G63400.1  protein_id AT1G63400.1p  transcript_id AT1G63400.1  
At1g63410	chr1:023511773	0.0	C/23511773-23511997,23511039-23511254,23510841-23510945,23510075-23510155	AT1G63410.1  CDS  gene_syn F2K11.21, F2K11_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14260.1); Has 107 Blast hits to 107 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G63410.1p  transcript_id AT1G63410.1  protein_id AT1G63410.1p  transcript_id AT1G63410.1  
At1g63420	chr1:023515874	0.0	W/23515874-23516035,23516124-23516276,23516368-23516948,23517495-23517690,23517795-23517859,23517934-23518144,23518409-23518777	AT1G63420.1  CDS  gene_syn F2K11.20, F2K11_20  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro:IPR008539); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23850.1); Has 456 Blast hits to 452 proteins in 97 species: Archae - 0; Bacteria - 32; Metazoa - 199; Fungi - 74; Plants - 114; Viruses - 7; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G63420.1p  transcript_id AT1G63420.1  protein_id AT1G63420.1p  transcript_id AT1G63420.1  
At1g63430	chr1:023522896	0.0	W/23522896-23522977,23523317-23523455,23523592-23523663,23523749-23523892,23523992-23524132,23524230-23524346,23524427-23524491,23524574-23524831,23524923-23525128,23525237-23525369,23525460-23525617,23525718-23525933,23526188-23526451	AT1G63430.1  CDS  gene_syn F2K11.19, F2K11_19  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT5G41180.1); Has 51292 Blast hits to 27277 proteins in 974 species: Archae - 32; Bacteria - 2141; Metazoa - 9340; Fungi - 465; Plants - 35457; Viruses - 81; Other Eukaryotes - 3776 (source: NCBI BLink).  protein_id AT1G63430.1p  transcript_id AT1G63430.1  protein_id AT1G63430.1p  transcript_id AT1G63430.1  
At1g63440	chr1:023527655	0.0	W/23527655-23527957,23528057-23529460,23529549-23529803,23529933-23530055,23530126-23530605,23530687-23531109	AT1G63440.1  CDS  gene_syn F2K11.18, F2K11_18, HEAVY METAL ATPASE 5, HMA5  gene HMA5  function The Arabidopsis P-type ATPase HMA5 is involved in Cu detoxification. hma5 mutant plants exhibit Cu hypersensitivity, which is especially dramatic in roots where HMA5 is mostly expressed.  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process response to iron ion|GO:0010039|16367966|IEP  go_process response to zinc ion|GO:0010043|16367966|IEP  go_process response to silver ion|GO:0010272|16367966|IEP  go_process detoxification of copper ion|GO:0010273|16367966|IMP  go_process response to cadmium ion|GO:0046686|16367966|IEP  go_process response to copper ion|GO:0046688|16367966|IEP  go_process response to copper ion|GO:0046688|18701674|IMP  go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662||ISS  product HMA5 (HEAVY METAL ATPASE 5); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism  note HEAVY METAL ATPASE 5 (HMA5); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: in 6 processes; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Heavy metal transport/detoxification protein (InterPro:IPR006121), ATPase, P type, cation/copper-transporter (InterPro:IPR006403), ATPase 1, copper-transporting (InterPro:IPR001877), ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, heavy metal translocating (InterPro:IPR006416), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), Heavy-metal-associated, conserved site (InterPro:IPR017969), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: RAN1 (RESPONSIVE-TO-ANTAGONIST 1); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism / copper ion transmembrane transporter (TAIR:AT5G44790.1); Has 26504 Blast hits to 19182 proteins in 2054 species: Archae - 611; Bacteria - 15456; Metazoa - 4179; Fungi - 1678; Plants - 1050; Viruses - 3; Other Eukaryotes - 3527 (source: NCBI BLink).  protein_id AT1G63440.1p  transcript_id AT1G63440.1  protein_id AT1G63440.1p  transcript_id AT1G63440.1  
At1g63450	chr1:023532523	0.0	W/23532523-23534517	AT1G63450.1  CDS  gene_syn F2K11.17, F2K11_17  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_function catalytic activity|GO:0003824||ISS  product catalytic  note catalytic; FUNCTIONS IN: catalytic activity; LOCATED IN: membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: exostosin family protein (TAIR:AT5G41250.1); Has 391 Blast hits to 390 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 363; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT1G63450.1p  transcript_id AT1G63450.1  protein_id AT1G63450.1p  transcript_id AT1G63450.1  
At1g63460	chr1:023535118	0.0	W/23535118-23535162,23535544-23535620,23535709-23535770,23535842-23535960,23536051-23536218,23536294-23536326	AT1G63460.1  CDS  gene_syn F2K11.16, F2K11_16  go_process response to oxidative stress|GO:0006979||IEA  go_function glutathione peroxidase activity|GO:0004602||IEA  go_component cellular_component|GO:0005575||ND  go_function glutathione peroxidase activity|GO:0004602||ISS  product glutathione peroxidase, putative  note glutathione peroxidase, putative; FUNCTIONS IN: glutathione peroxidase activity; INVOLVED IN: response to oxidative stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336), Glutathione peroxidase (InterPro:IPR000889); BEST Arabidopsis thaliana protein match is: ATGPX6 (GLUTATHIONE PEROXIDASE 6); glutathione peroxidase (TAIR:AT4G11600.1); Has 5286 Blast hits to 5285 proteins in 1007 species: Archae - 0; Bacteria - 1863; Metazoa - 687; Fungi - 136; Plants - 239; Viruses - 8; Other Eukaryotes - 2353 (source: NCBI BLink).  protein_id AT1G63460.1p  transcript_id AT1G63460.1  protein_id AT1G63460.1p  transcript_id AT1G63460.1  
At1g63470	chr1:023538368	0.0	C/23538368-23538863,23537759-23537826,23537547-23537678,23537301-23537459,23536831-23537112	AT1G63470.1  CDS  gene_syn F2K11.28, F2K11_28  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product DNA-binding family protein  note DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding, conserved site (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: DNA-binding family protein (TAIR:AT1G63480.1); Has 668 Blast hits to 666 proteins in 58 species: Archae - 0; Bacteria - 22; Metazoa - 173; Fungi - 26; Plants - 435; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G63470.1p  transcript_id AT1G63470.1  protein_id AT1G63470.1p  transcript_id AT1G63470.1  
At1g63480	chr1:023541241	0.0	C/23541241-23541685,23540766-23540833,23540549-23540680,23540308-23540466,23539872-23540153	AT1G63480.1  CDS  gene_syn F2K11.15, F2K11_15  go_function DNA binding|GO:0003677||IEA  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product DNA-binding family protein  note DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding, conserved site (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: DNA-binding family protein (TAIR:AT1G63470.1); Has 519 Blast hits to 517 proteins in 58 species: Archae - 0; Bacteria - 8; Metazoa - 44; Fungi - 34; Plants - 421; Viruses - 1; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G63480.1p  transcript_id AT1G63480.1  protein_id AT1G63480.1p  transcript_id AT1G63480.1  
At1g63490	chr1:023551669	0.0	C/23551669-23551946,23551398-23551455,23551163-23551285,23550940-23550997,23550686-23550822,23550208-23550369,23550009-23550095,23549650-23549832,23549233-23549385,23548965-23549147,23548807-23548872,23548589-23548684,23548062-23548148,23547866-23547982,23547566-23547773,23547412-23547476,23547112-23547170,23546891-23547022,23546638-23546797,23546210-23546545,23546060-23546116,23545828-23545926,23545642-23545737,23545366-23545556,23544938-23545097	AT1G63490.1  CDS  gene_syn F2K11.14, F2K11_14  go_component nucleus|GO:0005634||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor jumonji (jmjC) domain-containing protein  note transcription factor jumonji (jmjC) domain-containing protein; FUNCTIONS IN: transcription factor activity; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), PLU-1-like (InterPro:IPR013637), Zinc finger, C5HC2-type (InterPro:IPR004198), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Transcription factor jumonji (InterPro:IPR013129), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (TAIR:AT4G20400.2); Has 1751 Blast hits to 1483 proteins in 141 species: Archae - 0; Bacteria - 11; Metazoa - 1137; Fungi - 316; Plants - 137; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).  protein_id AT1G63490.1p  transcript_id AT1G63490.1  protein_id AT1G63490.1p  transcript_id AT1G63490.1  
At1g63500	chr1:023556015	0.0	W/23556015-23556096,23556187-23556407,23556491-23556626,23556724-23556857,23556985-23557090,23557183-23557268,23557381-23557569,23557688-23557840,23557953-23558066,23558161-23558403	AT1G63500.1  CDS  gene_syn F2K11.13, F2K11_13  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function binding|GO:0005488||IEA  go_function ATP binding|GO:0005524||IEA  product ATP binding / binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note ATP binding / binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, binding, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tetratricopeptide-like helical (InterPro:IPR011990), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G41260.1); Has 16820 Blast hits to 16536 proteins in 587 species: Archae - 4; Bacteria - 565; Metazoa - 3898; Fungi - 88; Plants - 11430; Viruses - 67; Other Eukaryotes - 768 (source: NCBI BLink).  protein_id AT1G63500.1p  transcript_id AT1G63500.1  protein_id AT1G63500.1p  transcript_id AT1G63500.1  
At1g63510	chr1:023559187	0.0	C/23559187-23559258	AT1G63510.1  tRNA  gene_syn 51790.TRNA-CYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Cys (anticodon: GCA)  transcript_id AT1G63510.1  
At1g63520	chr1:023560205	0.0	W/23560205-23561515,23561598-23561873	AT1G63520.1  CDS  gene_syn F2K11.12, F2K11_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11450.1); Has 63 Blast hits to 63 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G63520.1p  transcript_id AT1G63520.1  protein_id AT1G63520.1p  transcript_id AT1G63520.1  
At1g63522	chr1:023562291	0.0	C/23562291-23562482	AT1G63522.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63535.1); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G63522.1p  transcript_id AT1G63522.1  protein_id AT1G63522.1p  transcript_id AT1G63522.1  
At1g63530	chr1:023563654	0.0	W/23563654-23564575,23564659-23565236	AT1G63530.1  CDS  gene_syn F2K11.11, F2K11_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G63540.1); Has 9178 Blast hits to 3392 proteins in 331 species: Archae - 0; Bacteria - 1035; Metazoa - 3449; Fungi - 1835; Plants - 200; Viruses - 89; Other Eukaryotes - 2570 (source: NCBI BLink).  protein_id AT1G63530.1p  transcript_id AT1G63530.1  protein_id AT1G63530.1p  transcript_id AT1G63530.1  
At1g63535	chr1:023566045	0.0	C/23566045-23566227	AT1G63535.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63522.1); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G63535.1p  transcript_id AT1G63535.1  protein_id AT1G63535.1p  transcript_id AT1G63535.1  
At1g63540	chr1:023567495	0.0	W/23567495-23569073,23569167-23569495	AT1G63540.1  CDS  gene_syn F2K11.10, F2K11_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63530.1); Has 20552 Blast hits to 10137 proteins in 632 species: Archae - 12; Bacteria - 2497; Metazoa - 8019; Fungi - 4784; Plants - 799; Viruses - 291; Other Eukaryotes - 4150 (source: NCBI BLink).  protein_id AT1G63540.1p  transcript_id AT1G63540.1  protein_id AT1G63540.1p  transcript_id AT1G63540.1  
At1g63550	chr1:023569786	0.0	W/23569786-23570692,23570823-23570890	AT1G63550.1  CDS  gene_syn F2K11.9, F2K11_9  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  product unknown protein  note LOCATED IN: anchored to membrane; EXPRESSED IN: flower, root, carpel, leaf; EXPRESSED DURING: 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase-related (TAIR:AT1G63570.1); Has 4939 Blast hits to 2168 proteins in 204 species: Archae - 8; Bacteria - 183; Metazoa - 580; Fungi - 134; Plants - 2707; Viruses - 661; Other Eukaryotes - 666 (source: NCBI BLink).  protein_id AT1G63550.1p  transcript_id AT1G63550.1  protein_id AT1G63550.1p  transcript_id AT1G63550.1  
At1g63560	chr1:023573161	0.0	W/23573161-23573940	AT1G63560.1  CDS  gene_syn F2K11.8, F2K11_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: protein kinase-related (TAIR:AT1G63600.1); Has 899 Blast hits to 869 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 899; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G63560.1p  transcript_id AT1G63560.1  protein_id AT1G63560.1p  transcript_id AT1G63560.1  
At1g63570	chr1:023575450	0.0	W/23575450-23576304	AT1G63570.1  CDS  gene_syn F2K11.7, F2K11_7  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product receptor-like protein kinase-related  note receptor-like protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63550.1); Has 2279 Blast hits to 1343 proteins in 99 species: Archae - 0; Bacteria - 34; Metazoa - 97; Fungi - 19; Plants - 1366; Viruses - 399; Other Eukaryotes - 364 (source: NCBI BLink).  protein_id AT1G63570.1p  transcript_id AT1G63570.1  protein_id AT1G63570.1p  transcript_id AT1G63570.1  
At1g63580	chr1:023577333	0.0	W/23577333-23578092,23578193-23578254	AT1G63580.1  CDS  gene_syn F2K11.6, F2K11_6  function Encodes a plasma membrane-localized protein with two DUF26 domains and a GPI anchor domain.  go_component plasma membrane|GO:0005886|18215111|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  product protein kinase-related  note protein kinase-related; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase-related (TAIR:AT1G63590.1); Has 877 Blast hits to 848 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 877; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G63580.1p  transcript_id AT1G63580.1  protein_id AT1G63580.1p  transcript_id AT1G63580.1  
At1g63590	chr1:023579896	0.0	W/23579896-23580702	AT1G63590.1  CDS  gene_syn F2K11.5, F2K11_5  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product receptor-like protein kinase-related  note receptor-like protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: protein kinase-related (TAIR:AT1G63580.1); Has 931 Blast hits to 886 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 931; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G63590.1p  transcript_id AT1G63590.1  protein_id AT1G63590.1p  transcript_id AT1G63590.1  
At1g63600	chr1:023581716	0.0	W/23581716-23582624	AT1G63600.1  CDS  gene_syn F2K11.4, F2K11_4  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product protein kinase-related  note protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase-related (TAIR:AT1G63570.1); Has 952 Blast hits to 922 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 2; Plants - 933; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G63600.1p  transcript_id AT1G63600.1  protein_id AT1G63600.1p  transcript_id AT1G63600.1  
At1g63610	chr1:023585360	0.0	C/23585360-23585599,23585177-23585269,23585018-23585098,23584789-23584920,23584124-23584345,23583942-23584034,23583675-23583836	AT1G63610.1  CDS  gene_syn F2K11.3, F2K11_3  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14910.1); Has 445 Blast hits to 324 proteins in 81 species: Archae - 0; Bacteria - 191; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink).  protein_id AT1G63610.1p  transcript_id AT1G63610.1  protein_id AT1G63610.1p  transcript_id AT1G63610.1  
At1g63610	chr1:023585360	0.0	C/23585360-23585599,23585177-23585272,23585018-23585098,23584789-23584920,23584124-23584345,23583942-23584034,23583675-23583836	AT1G63610.2  CDS  gene_syn F2K11.3, F2K11_3  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14910.1); Has 445 Blast hits to 324 proteins in 81 species: Archae - 0; Bacteria - 191; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink).  protein_id AT1G63610.2p  transcript_id AT1G63610.2  protein_id AT1G63610.2p  transcript_id AT1G63610.2  
At1g63630	chr1:023587298	0.0	W/23587298-23588047,23588197-23588220	AT1G63630.1  CDS  gene_syn F2K11.2, F2K11_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G63230.1); Has 27110 Blast hits to 5794 proteins in 169 species: Archae - 7; Bacteria - 20; Metazoa - 531; Fungi - 391; Plants - 25315; Viruses - 0; Other Eukaryotes - 846 (source: NCBI BLink).  protein_id AT1G63630.1p  transcript_id AT1G63630.1  protein_id AT1G63630.1p  transcript_id AT1G63630.1  
At1g63630	chr1:023587613	0.0	W/23587613-23588047,23588197-23588220	AT1G63630.2  CDS  gene_syn F2K11.2, F2K11_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G63230.1).  protein_id AT1G63630.2p  transcript_id AT1G63630.2  protein_id AT1G63630.2p  transcript_id AT1G63630.2  
At1g63640	chr1:023595019	0.0	C/23595019-23595139,23594551-23594702,23594340-23594438,23593750-23593983,23593577-23593660,23593356-23593433,23593168-23593260,23593046-23593075,23592418-23592759,23592256-23592337,23592063-23592158,23591795-23591974,23591601-23591707,23591337-23591515,23591008-23591172,23590666-23590919,23590396-23590559,23589704-23590290,23589506-23589612,23589234-23589295	AT1G63640.1  CDS  gene_syn F2K11.1, F2K11_1  go_component plasma membrane|GO:0005886|17317660|IDA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product kinesin motor protein-related  note kinesin motor protein-related; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin motor protein-related (TAIR:AT5G41310.1); Has 19688 Blast hits to 16227 proteins in 685 species: Archae - 141; Bacteria - 903; Metazoa - 9219; Fungi - 1719; Plants - 1255; Viruses - 37; Other Eukaryotes - 6414 (source: NCBI BLink).  protein_id AT1G63640.1p  transcript_id AT1G63640.1  protein_id AT1G63640.1p  transcript_id AT1G63640.1  
At1g63640	chr1:023595019	0.0	C/23595019-23595139,23594551-23594702,23594340-23594438,23593750-23593983,23593577-23593660,23593356-23593433,23593168-23593260,23593046-23593075,23592418-23592759,23592256-23592337,23592063-23592158,23591795-23591974,23591601-23591707,23591353-23591515,23591008-23591167,23590666-23590919,23590396-23590559,23589704-23590290,23589506-23589615,23589234-23589295	AT1G63640.2  CDS  gene_syn F2K11.1, F2K11_1  go_component plasma membrane|GO:0005886|17317660|IDA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product kinesin motor protein-related  note kinesin motor protein-related; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin motor protein-related (TAIR:AT5G41310.1); Has 19560 Blast hits to 16107 proteins in 680 species: Archae - 143; Bacteria - 861; Metazoa - 9203; Fungi - 1705; Plants - 1252; Viruses - 37; Other Eukaryotes - 6359 (source: NCBI BLink).  protein_id AT1G63640.2p  transcript_id AT1G63640.2  protein_id AT1G63640.2p  transcript_id AT1G63640.2  
At1g63650	chr1:023599809	0.0	W/23599809-23599927,23600116-23600388,23600937-23601033,23601139-23601210,23601293-23602030,23602152-23602571,23602663-23602734	AT1G63650.1  CDS  gene_syn ATMYC-2, EGL1, EGL3, ENHANCER OF GLABRA 3, F24D7.16, F24D7_16  gene EGL3  function Mutant has reduced trichomes, anthocyanin, and seed coat mucilage and abnormally patterned stomates. Encodes a bHLH Transcription Factor 1. The protein is functionally redundant with GL3 and TT8 and interacts with TTG1, the myb proteins GL1, PAP1 and 2, CPC and TRY, and it will form heterodimers with GL3. Expression in N (non-hair cell forming) cell layers is negatively regulated by WER. Expression in H cells (hair cell forming) is promoted by CPC/TRY.  go_component nucleus|GO:0005634||IEA  go_process epidermal cell fate specification|GO:0009957|12917293|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700|12917293|ISS  product EGL3 (ENHANCER OF GLABRA 3); DNA binding / transcription factor  note ENHANCER OF GLABRA 3 (EGL3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: epidermal cell fate specification, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: GL3 (GLABROUS 3); protein binding / transcription factor (TAIR:AT5G41315.1); Has 2014 Blast hits to 1922 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 59; Fungi - 40; Plants - 1911; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G63650.1p  transcript_id AT1G63650.1  protein_id AT1G63650.1p  transcript_id AT1G63650.1  
At1g63650	chr1:023599809	0.0	W/23599809-23599927,23600116-23600388,23600937-23601033,23601139-23601210,23601293-23602030,23602152-23602571,23602663-23602734	AT1G63650.2  CDS  gene_syn ATMYC-2, EGL1, EGL3, ENHANCER OF GLABRA 3, F24D7.16, F24D7_16  gene EGL3  function Mutant has reduced trichomes, anthocyanin, and seed coat mucilage and abnormally patterned stomates. Encodes a bHLH Transcription Factor 1. The protein is functionally redundant with GL3 and TT8 and interacts with TTG1, the myb proteins GL1, PAP1 and 2, CPC and TRY, and it will form heterodimers with GL3. Expression in N (non-hair cell forming) cell layers is negatively regulated by WER. Expression in H cells (hair cell forming) is promoted by CPC/TRY.  go_component nucleus|GO:0005634||IEA  go_process epidermal cell fate specification|GO:0009957|12917293|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700|12917293|ISS  product EGL3 (ENHANCER OF GLABRA 3); DNA binding / transcription factor  note ENHANCER OF GLABRA 3 (EGL3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: epidermal cell fate specification, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: GL3 (GLABROUS 3); protein binding / transcription factor (TAIR:AT5G41315.1); Has 2014 Blast hits to 1922 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 59; Fungi - 40; Plants - 1911; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G63650.2p  transcript_id AT1G63650.2  protein_id AT1G63650.2p  transcript_id AT1G63650.2  
At1g63660	chr1:023606535	0.0	C/23606535-23607080,23605652-23605902,23605196-23605571,23604973-23605104,23604703-23604878,23604127-23604250	AT1G63660.1  CDS  gene_syn F24D7.15, F24D7_15  go_process purine nucleotide biosynthetic process|GO:0006164||IEA  go_process GMP biosynthetic process|GO:0006177||IEA  go_process glutamine metabolic process|GO:0006541||IEA  go_process biosynthetic process|GO:0009058||IEA  go_process purine base biosynthetic process|GO:0009113||IEA  go_process nucleotide metabolic process|GO:0009117||IEA  go_function catalytic activity|GO:0003824||IEA  go_function GMP synthase (glutamine-hydrolyzing) activity|GO:0003922||IEA  go_function ATP binding|GO:0005524||IEA  go_function GMP synthase (glutamine-hydrolyzing) activity|GO:0003922||ISS  product GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative  note GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative; FUNCTIONS IN: catalytic activity, GMP synthase (glutamine-hydrolyzing) activity, ATP binding; INVOLVED IN: in 6 processes; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), GMP synthase, N-terminal (InterPro:IPR004739), GMP synthase, C-terminal (InterPro:IPR001674), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamine amidotransferase type 1 (InterPro:IPR017926), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220), tRNA methyl transferase-like (InterPro:IPR018318); Has 14506 Blast hits to 14404 proteins in 1630 species: Archae - 471; Bacteria - 6378; Metazoa - 178; Fungi - 197; Plants - 83; Viruses - 0; Other Eukaryotes - 7199 (source: NCBI BLink).  protein_id AT1G63660.1p  transcript_id AT1G63660.1  protein_id AT1G63660.1p  transcript_id AT1G63660.1  
At1g63660	chr1:023606535	0.0	C/23606535-23607080,23605652-23605902,23605196-23605571,23604978-23605104,23604874-23604878	AT1G63660.2  CDS  gene_syn F24D7.15, F24D7_15  go_process GMP biosynthetic process|GO:0006177||IEA  go_process glutamine metabolic process|GO:0006541||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function catalytic activity|GO:0003824||IEA  go_function GMP synthase (glutamine-hydrolyzing) activity|GO:0003922||IEA  go_function ATP binding|GO:0005524||IEA  go_function GMP synthase (glutamine-hydrolyzing) activity|GO:0003922||ISS  product GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative  note GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative; FUNCTIONS IN: GMP synthase (glutamine-hydrolyzing) activity, catalytic activity, ATP binding; INVOLVED IN: GMP biosynthetic process, glutamine metabolic process, biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), GMP synthase, N-terminal (InterPro:IPR004739), Glutamine amidotransferase type 1 (InterPro:IPR017926), tRNA methyl transferase-like (InterPro:IPR018318), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); Has 13940 Blast hits to 13923 proteins in 1628 species: Archae - 471; Bacteria - 6343; Metazoa - 132; Fungi - 197; Plants - 81; Viruses - 0; Other Eukaryotes - 6716 (source: NCBI BLink).  protein_id AT1G63660.2p  transcript_id AT1G63660.2  protein_id AT1G63660.2p  transcript_id AT1G63660.2  
At1g63670	chr1:023609811	0.0	C/23609811-23610003,23609659-23609726,23608553-23609579,23608402-23608481,23608166-23608313,23607527-23608080	AT1G63670.1  CDS  gene_syn F24D7.14, F24D7_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45900.1); Has 554 Blast hits to 499 proteins in 105 species: Archae - 5; Bacteria - 37; Metazoa - 140; Fungi - 36; Plants - 82; Viruses - 4; Other Eukaryotes - 250 (source: NCBI BLink).  protein_id AT1G63670.1p  transcript_id AT1G63670.1  protein_id AT1G63670.1p  transcript_id AT1G63670.1  
At1g63670	chr1:023609811	0.0	C/23609811-23610003,23609659-23609726,23608553-23609579,23608402-23608481,23608166-23608313,23607527-23608080	AT1G63670.2  CDS  gene_syn F24D7.14, F24D7_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45900.1); Has 554 Blast hits to 499 proteins in 105 species: Archae - 5; Bacteria - 37; Metazoa - 140; Fungi - 36; Plants - 82; Viruses - 4; Other Eukaryotes - 250 (source: NCBI BLink).  protein_id AT1G63670.2p  transcript_id AT1G63670.2  protein_id AT1G63670.2p  transcript_id AT1G63670.2  
At1g63670	chr1:023609811	0.0	C/23609811-23610003,23609659-23609726,23608553-23609579,23608402-23608481,23608166-23608313,23607527-23608080	AT1G63670.3  CDS  gene_syn F24D7.14, F24D7_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45900.1); Has 554 Blast hits to 499 proteins in 105 species: Archae - 5; Bacteria - 37; Metazoa - 140; Fungi - 36; Plants - 82; Viruses - 4; Other Eukaryotes - 250 (source: NCBI BLink).  protein_id AT1G63670.3p  transcript_id AT1G63670.3  protein_id AT1G63670.3p  transcript_id AT1G63670.3  
At1g63680	chr1:023614461	0.0	W/23614461-23616321,23616434-23616550,23616639-23616814,23616952-23617097,23617229-23617247	AT1G63680.1  CDS  gene_syn ATMURE, F24D7.13, F24D7_13, MURE, PDE316, PIGMENT DEFECTIVE EMBRYO 316  gene MURE  function Encodes AtMurE, a homolog of the bacterial MurE that catalyze the ATP-dependent formation of UDP-N-acetylmuramic acid-tripeptide in bacterial peptidoglycan biosynthesis. Localized to plastids. AtMurE is involved in chloroplast biogenesis.  go_component nucleoid|GO:0009295|16326926|IDA  go_function ATP binding|GO:0005524||IEA  go_function ligase activity|GO:0016874||IEA  go_function acid-amino acid ligase activity|GO:0016881||IEA  go_component chloroplast|GO:0009507|18036201|IDA  go_process biosynthetic process|GO:0009058||ISS  go_process chloroplast organization|GO:0009658|18036201|IMP  go_process chloroplast fission|GO:0010020|18036201|IMP  go_function ATP binding|GO:0005524||ISS  go_function ligase activity|GO:0016874||ISS  product MURE; ATP binding / acid-amino acid ligase/ ligase  note MURE; FUNCTIONS IN: acid-amino acid ligase activity, ATP binding, ligase activity; INVOLVED IN: chloroplast fission, chloroplast organization, biosynthetic process; LOCATED IN: chloroplast, nucleoid; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Mur ligase, central (InterPro:IPR013221), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (InterPro:IPR005761), Mur ligase, C-terminal (InterPro:IPR004101), Mur ligase, N-terminal (InterPro:IPR000713); Has 13332 Blast hits to 13271 proteins in 1423 species: Archae - 32; Bacteria - 8144; Metazoa - 63; Fungi - 50; Plants - 33; Viruses - 2; Other Eukaryotes - 5008 (source: NCBI BLink).  protein_id AT1G63680.1p  transcript_id AT1G63680.1  protein_id AT1G63680.1p  transcript_id AT1G63680.1  
At1g63690	chr1:023618490	0.0	W/23618490-23618636,23619006-23619164,23619259-23619370,23619497-23619616,23619728-23619879,23620334-23620513,23620669-23620703,23620782-23620938,23621025-23621078,23621165-23621257,23621395-23621537,23621633-23621703,23621798-23621881,23621967-23622082	AT1G63690.1  CDS  gene_syn F24D7.12, F24D7_12  go_component plasma membrane|GO:0005886|17317660|IDA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  go_function peptidase activity|GO:0008233||ISS  product protease-associated (PA) domain-containing protein  note protease-associated (PA) domain-containing protein; FUNCTIONS IN: peptidase activity, aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22B, signal peptide peptidase (InterPro:IPR007369); BEST Arabidopsis thaliana protein match is: aspartic-type endopeptidase/ peptidase (TAIR:AT1G01650.1); Has 1354 Blast hits to 1339 proteins in 210 species: Archae - 0; Bacteria - 123; Metazoa - 668; Fungi - 109; Plants - 251; Viruses - 0; Other Eukaryotes - 203 (source: NCBI BLink).  protein_id AT1G63690.1p  transcript_id AT1G63690.1  protein_id AT1G63690.1p  transcript_id AT1G63690.1  
At1g63690	chr1:023618490	0.0	W/23618490-23618636,23619006-23619164,23619259-23619370,23619497-23619616,23619728-23619879,23620334-23620513,23620669-23620703,23620782-23620938,23621025-23621078,23621165-23621261,23621399-23621537,23621633-23621703,23621798-23621881,23621967-23622082	AT1G63690.2  CDS  gene_syn F24D7.12, F24D7_12  go_component plasma membrane|GO:0005886|17317660|IDA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  go_function peptidase activity|GO:0008233||ISS  product protease-associated (PA) domain-containing protein  note protease-associated (PA) domain-containing protein; FUNCTIONS IN: peptidase activity, aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22B, signal peptide peptidase (InterPro:IPR007369); BEST Arabidopsis thaliana protein match is: aspartic-type endopeptidase/ peptidase (TAIR:AT1G01650.1); Has 1356 Blast hits to 1341 proteins in 210 species: Archae - 0; Bacteria - 123; Metazoa - 670; Fungi - 109; Plants - 251; Viruses - 0; Other Eukaryotes - 203 (source: NCBI BLink).  protein_id AT1G63690.2p  transcript_id AT1G63690.2  protein_id AT1G63690.2p  transcript_id AT1G63690.2  
At1g63700	chr1:023628496	0.0	C/23628496-23629031,23627676-23628398,23627296-23627383,23627124-23627186,23626851-23627011,23626677-23626752,23626471-23626530,23626283-23626390,23625960-23626199,23625796-23625887,23625208-23625712	AT1G63700.1  CDS  gene_syn F24D7.11, F24D7_11, MAP KINASE KINASE KINASE 4, MAPKKK4, YDA, YODA  gene YDA  function member of MEKK subfamily, a component of the stomatal development regulatory pathway.  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_process stomatal complex morphogenesis|GO:0010103|15178800|IMP  go_function kinase activity|GO:0016301||ISS  product YDA (YODA); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note YODA (YDA); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: stomatal complex morphogenesis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: MAP3KA; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT1G53570.3); Has 97578 Blast hits to 95709 proteins in 3495 species: Archae - 69; Bacteria - 8434; Metazoa - 43159; Fungi - 8545; Plants - 18589; Viruses - 515; Other Eukaryotes - 18267 (source: NCBI BLink).  protein_id AT1G63700.1p  transcript_id AT1G63700.1  protein_id AT1G63700.1p  transcript_id AT1G63700.1  
At1g63710	chr1:023632360	0.0	C/23632360-23633931	AT1G63710.1  CDS  gene_syn CYP86A7, F24D7.10, F24D7_10  gene CYP86A7  function Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at highest level in mature stems and flowers.  go_component endomembrane system|GO:0012505||IEA  go_process fatty acid metabolic process|GO:0006631|15709153|IDA  go_function fatty acid (omega-1)-hydroxylase activity|GO:0008393|15709153|IDA  go_function oxygen binding|GO:0019825||ISS  product CYP86A7; fatty acid (omega-1)-hydroxylase/ oxygen binding  note CYP86A7; FUNCTIONS IN: fatty acid (omega-1)-hydroxylase activity, oxygen binding; INVOLVED IN: fatty acid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP86A8; fatty acid (omega-1)-hydroxylase/ oxygen binding (TAIR:AT2G45970.1); Has 20053 Blast hits to 19995 proteins in 1083 species: Archae - 19; Bacteria - 1385; Metazoa - 9365; Fungi - 3881; Plants - 4731; Viruses - 3; Other Eukaryotes - 669 (source: NCBI BLink).  protein_id AT1G63710.1p  transcript_id AT1G63710.1  protein_id AT1G63710.1p  transcript_id AT1G63710.1  
At1g63720	chr1:023637244	0.0	C/23637244-23637348,23636122-23637093	AT1G63720.1  CDS  gene_syn F24D7.9, F24D7_9  product unknown protein  note EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G52430.1); Has 406 Blast hits to 313 proteins in 78 species: Archae - 0; Bacteria - 2; Metazoa - 123; Fungi - 81; Plants - 111; Viruses - 14; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT1G63720.1p  transcript_id AT1G63720.1  protein_id AT1G63720.1p  transcript_id AT1G63720.1  
At1g63730	chr1:023641770	0.0	W/23641770-23642239,23642494-23643589,23643705-23644004,23644098-23645132	AT1G63730.1  CDS  gene_syn F24D7.8, F24D7_8  go_component intrinsic to membrane|GO:0031224||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952|10559437|TAS  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT1G63740.1); Has 12792 Blast hits to 9857 proteins in 377 species: Archae - 17; Bacteria - 725; Metazoa - 1305; Fungi - 16; Plants - 10412; Viruses - 0; Other Eukaryotes - 317 (source: NCBI BLink).  protein_id AT1G63730.1p  transcript_id AT1G63730.1  protein_id AT1G63730.1p  transcript_id AT1G63730.1  
At1g63740	chr1:023645525	0.0	W/23645525-23645868,23645962-23647069,23647187-23647486,23647581-23648807	AT1G63740.1  CDS  gene_syn F24D7.7, F24D7_7  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat 3 (InterPro:IPR011713), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT1G63730.1); Has 11548 Blast hits to 9320 proteins in 370 species: Archae - 3; Bacteria - 390; Metazoa - 431; Fungi - 28; Plants - 10485; Viruses - 2; Other Eukaryotes - 209 (source: NCBI BLink).  protein_id AT1G63740.1p  transcript_id AT1G63740.1  protein_id AT1G63740.1p  transcript_id AT1G63740.1  
At1g63750	chr1:023650940	0.0	W/23650940-23651424,23652247-23653342,23653415-23653714,23653819-23655333	AT1G63750.3  CDS  gene_syn F24D7.6, F24D7_6  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor  note ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor; FUNCTIONS IN: protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G58120.1); Has 15958 Blast hits to 12476 proteins in 552 species: Archae - 13; Bacteria - 1458; Metazoa - 1983; Fungi - 94; Plants - 11864; Viruses - 14; Other Eukaryotes - 532 (source: NCBI BLink).  protein_id AT1G63750.3p  transcript_id AT1G63750.3  protein_id AT1G63750.3p  transcript_id AT1G63750.3  
At1g63750	chr1:023652263	0.0	W/23652263-23653342,23653415-23653714,23653819-23655333	AT1G63750.1  CDS  gene_syn F24D7.6, F24D7_6  go_process apoptosis|GO:0006915||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding  note ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding; FUNCTIONS IN: protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: defense response, apoptosis; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G58120.1); Has 15567 Blast hits to 12215 proteins in 549 species: Archae - 13; Bacteria - 1443; Metazoa - 1994; Fungi - 94; Plants - 11472; Viruses - 14; Other Eukaryotes - 537 (source: NCBI BLink).  protein_id AT1G63750.1p  transcript_id AT1G63750.1  protein_id AT1G63750.1p  transcript_id AT1G63750.1  
At1g63750	chr1:023652263	0.0	W/23652263-23653342,23653415-23653714,23653819-23655333	AT1G63750.2  CDS  gene_syn F24D7.6, F24D7_6  go_process apoptosis|GO:0006915||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding  note ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding; FUNCTIONS IN: protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: defense response, apoptosis; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G58120.1); Has 15567 Blast hits to 12215 proteins in 549 species: Archae - 13; Bacteria - 1443; Metazoa - 1994; Fungi - 94; Plants - 11472; Viruses - 14; Other Eukaryotes - 537 (source: NCBI BLink).  protein_id AT1G63750.2p  transcript_id AT1G63750.2  protein_id AT1G63750.2p  transcript_id AT1G63750.2  
At1g63760	chr1:023655713	0.0	W/23655713-23657612	AT1G63760.1  pseudogenic_transcript  pseudo  gene_syn ARI16, ARIADNE 16, ATARI16, F24D7.5  gene ARI16  note pseudogene, ARI protein, similar to ARI protein (A Drosophila RING Finger Motif Involved in Axonal Path-finding in the Central Nervous System) GB:CAA66953 (Drosophila melanogaster); blastp match of 86% identity and 5.3e-235 P-value to GP|6850317|gb|AAF29394.1|AC009999_14|AC009999 Contains similarity to Ariadne-2 protein from Drosophila melanogaster gb|AJ010169 and contains an IBR PF|01485 and a zf-C3HC4 (RING finger) PF|00097 domain. ESTs gb|AA585849, gb|T42014 come from this gene. -TRUNCATED-  
At1g63770	chr1:023663414	0.0	C/23663414-23663476,23663251-23663326,23663029-23663105,23662763-23662879,23662610-23662684,23662419-23662526,23662119-23662331,23661969-23662030,23661816-23661843,23661648-23661734,23661540-23661565,23661222-23661366,23661089-23661136,23660981-23660999,23660834-23660838,23660686-23660733,23660588-23660644,23660386-23660495,23660222-23660302,23659882-23660050,23659555-23659703,23659337-23659475,23659099-23659245,23658879-23658960,23658611-23658786,23658416-23658526,23658216-23658332,23658038-23658109,23657791-23657871	AT1G63770.4  CDS  gene_syn F24D7.4, F24D7_4  go_function metallopeptidase activity|GO:0008237||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process proteolysis|GO:0006508||ISS  product peptidase M1 family protein  note peptidase M1 family protein; FUNCTIONS IN: metallopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M1, membrane alanine aminopeptidase (InterPro:IPR001930), Peptidase M1, membrane alanine aminopeptidase, N-terminal (InterPro:IPR014782), Peptidase M1, alanyl aminopeptidase (InterPro:IPR012779); BEST Arabidopsis thaliana protein match is: APM1 (AMINOPEPTIDASE M1); aminopeptidase (TAIR:AT4G33090.1).  protein_id AT1G63770.4p  transcript_id AT1G63770.4  protein_id AT1G63770.4p  transcript_id AT1G63770.4  
At1g63770	chr1:023664166	0.0	C/23664166-23664243,23663789-23663863,23663661-23663705,23663414-23663554,23663251-23663326,23663029-23663105,23662763-23662879,23662610-23662684,23662419-23662526,23662119-23662331,23661969-23662030,23661816-23661843,23661648-23661734,23661540-23661565,23661222-23661366,23661089-23661136,23660686-23660733,23660588-23660644,23660386-23660495,23660222-23660302,23659882-23660050,23659555-23659703,23659337-23659475,23659099-23659245,23658879-23658960,23658611-23658786,23658412-23658526,23658250-23658332	AT1G63770.1  CDS  gene_syn F24D7.4, F24D7_4  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function metallopeptidase activity|GO:0008237||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process proteolysis|GO:0006508||ISS  product peptidase M1 family protein  note peptidase M1 family protein; FUNCTIONS IN: metallopeptidase activity, zinc ion binding; INVOLVED IN: response to cadmium ion, proteolysis; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M1, membrane alanine aminopeptidase, N-terminal (InterPro:IPR014782), Peptidase M1, membrane alanine aminopeptidase (InterPro:IPR001930), Peptidase M1, alanyl aminopeptidase (InterPro:IPR012779); BEST Arabidopsis thaliana protein match is: APM1 (AMINOPEPTIDASE M1); aminopeptidase (TAIR:AT4G33090.1); Has 5570 Blast hits to 5550 proteins in 1071 species: Archae - 75; Bacteria - 2119; Metazoa - 1476; Fungi - 310; Plants - 111; Viruses - 0; Other Eukaryotes - 1479 (source: NCBI BLink).  protein_id AT1G63770.1p  transcript_id AT1G63770.1  protein_id AT1G63770.1p  transcript_id AT1G63770.1  
At1g63770	chr1:023664166	0.0	C/23664166-23664243,23663789-23663863,23663661-23663705,23663414-23663554,23663251-23663326,23663029-23663105,23662763-23662879,23662610-23662684,23662419-23662526,23662119-23662331,23661969-23662030,23661816-23661843,23661648-23661734,23661540-23661565,23661222-23661366,23661089-23661136,23660686-23660733,23660588-23660644,23660386-23660495,23660222-23660302,23659882-23660050,23659555-23659703,23659337-23659475,23659099-23659245,23658879-23658960,23658611-23658786,23658416-23658526,23658165-23658332	AT1G63770.2  CDS  gene_syn F24D7.4, F24D7_4  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function metallopeptidase activity|GO:0008237||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process proteolysis|GO:0006508||ISS  product peptidase M1 family protein  note peptidase M1 family protein; FUNCTIONS IN: metallopeptidase activity, zinc ion binding; INVOLVED IN: response to cadmium ion, proteolysis; LOCATED IN: apoplast, chloroplast, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M1, membrane alanine aminopeptidase (InterPro:IPR001930), Peptidase M1, membrane alanine aminopeptidase, N-terminal (InterPro:IPR014782), Peptidase M1, alanyl aminopeptidase (InterPro:IPR012779); BEST Arabidopsis thaliana protein match is: APM1 (AMINOPEPTIDASE M1); aminopeptidase (TAIR:AT4G33090.1); Has 5635 Blast hits to 5615 proteins in 1071 species: Archae - 75; Bacteria - 2121; Metazoa - 1476; Fungi - 310; Plants - 113; Viruses - 0; Other Eukaryotes - 1540 (source: NCBI BLink).  protein_id AT1G63770.2p  transcript_id AT1G63770.2  protein_id AT1G63770.2p  transcript_id AT1G63770.2  
At1g63770	chr1:023664166	0.0	C/23664166-23664243,23663789-23663863,23663661-23663705,23663414-23663554,23663251-23663326,23663029-23663105,23662763-23662879,23662610-23662684,23662419-23662526,23662119-23662331,23661969-23662030,23661816-23661843,23661648-23661734,23661540-23661565,23661222-23661366,23661089-23661136,23660981-23660999,23660834-23660838,23660686-23660733,23660588-23660644,23660386-23660495,23660222-23660302,23659882-23660050,23659555-23659703,23659337-23659475,23659099-23659245,23658879-23658960,23658611-23658786,23658416-23658526,23658216-23658332,23658038-23658109,23657791-23657871	AT1G63770.3  CDS  gene_syn F24D7.4, F24D7_4  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function metallopeptidase activity|GO:0008237||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process proteolysis|GO:0006508||ISS  product peptidase M1 family protein  note peptidase M1 family protein; FUNCTIONS IN: metallopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis; LOCATED IN: apoplast, chloroplast, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M1, membrane alanine aminopeptidase (InterPro:IPR001930), Peptidase M1, membrane alanine aminopeptidase, N-terminal (InterPro:IPR014782), Peptidase M1, alanyl aminopeptidase (InterPro:IPR012779); BEST Arabidopsis thaliana protein match is: APM1 (AMINOPEPTIDASE M1); aminopeptidase (TAIR:AT4G33090.1); Has 5698 Blast hits to 5676 proteins in 1074 species: Archae - 75; Bacteria - 2141; Metazoa - 1489; Fungi - 312; Plants - 115; Viruses - 0; Other Eukaryotes - 1566 (source: NCBI BLink).  protein_id AT1G63770.3p  transcript_id AT1G63770.3  protein_id AT1G63770.3p  transcript_id AT1G63770.3  
At1g63780	chr1:023667132	0.0	C/23667132-23667243,23666951-23667034,23666740-23666849,23666598-23666648,23665990-23666133,23665801-23665890,23665543-23665649,23665265-23665352,23665045-23665143	AT1G63780.1  CDS  gene_syn F24D7.3, IMP4  gene IMP4  function Small nucleolar ribonucleoprotein protein involved in ribosomal RNA processing. Located in nucleolus and cajal bodies.  go_component nucleolus|GO:0005730|14505352|TAS  go_component small nucleolar ribonucleoprotein complex|GO:0005732|14505352|TAS  go_component Cajal body|GO:0015030|14505352|TAS  go_component nuclear matrix|GO:0016363|14505352|IDA  go_process rRNA processing|GO:0006364|14505352|TAS  go_function molecular_function|GO:0003674||ND  product IMP4  note IMP4; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: nucleolus, small nucleolar ribonucleoprotein complex, Cajal body, nuclear matrix; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); BEST Arabidopsis thaliana protein match is: MEE49 (maternal effect embryo arrest 49) (TAIR:AT4G01560.1); Has 581 Blast hits to 579 proteins in 167 species: Archae - 8; Bacteria - 0; Metazoa - 210; Fungi - 177; Plants - 52; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).  protein_id AT1G63780.1p  transcript_id AT1G63780.1  protein_id AT1G63780.1p  transcript_id AT1G63780.1  
At1g63790	chr1:023667485	0.0	C/23667485-23667556	AT1G63790.1  tRNA  gene_syn 60012.TRNA-THR-1, 60015.TRNA-THR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Thr (anticodon: TGT)  transcript_id AT1G63790.1  
At1g63800	chr1:023668960	0.0	C/23668960-23669003,23668758-23668837,23668469-23668583,23668311-23668363,23668090-23668218,23667888-23668024	AT1G63800.1  CDS  gene_syn T12P18.18, T12P18_18, UBC5, ubiquitin-conjugating enzyme 5  gene UBC5  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC5 (ubiquitin-conjugating enzyme 5); ubiquitin-protein ligase  note ubiquitin-conjugating enzyme 5 (UBC5); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), Ubiquitin-conjugating enzyme (InterPro:IPR015581); BEST Arabidopsis thaliana protein match is: UBC4 (UBIQUITIN CONJUGATING ENZYME 4); ubiquitin-protein ligase (TAIR:AT5G41340.1); Has 6439 Blast hits to 6439 proteins in 297 species: Archae - 0; Bacteria - 0; Metazoa - 3223; Fungi - 1145; Plants - 952; Viruses - 16; Other Eukaryotes - 1103 (source: NCBI BLink).  protein_id AT1G63800.1p  transcript_id AT1G63800.1  protein_id AT1G63800.1p  transcript_id AT1G63800.1  
At1g63810	chr1:023675390	0.0	C/23675390-23675542,23675124-23675288,23674882-23675047,23674683-23674799,23674467-23674600,23674247-23674397,23674088-23674155,23673600-23673698,23673367-23673482,23672930-23673104,23672735-23672845,23672591-23672669,23672359-23672502,23672142-23672255,23671927-23672048,23671749-23671831,23671539-23671663,23671330-23671450,23671112-23671249,23670911-23671007,23670695-23670820,23670514-23670606,23670320-23670425,23670091-23670233,23669905-23669988,23669690-23669821	AT1G63810.1  CDS  gene_syn T12P18.17, T12P18_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nrap protein (InterPro:IPR005554); Has 268 Blast hits to 263 proteins in 124 species: Archae - 3; Bacteria - 0; Metazoa - 116; Fungi - 89; Plants - 17; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT1G63810.1p  transcript_id AT1G63810.1  protein_id AT1G63810.1p  transcript_id AT1G63810.1  
At1g63820	chr1:023683604	0.0	C/23683604-23684050,23683339-23683530,23682777-23682908,23682529-23682639	AT1G63820.1  CDS  gene_syn T12P18.16, T12P18_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41380.1); Has 907 Blast hits to 907 proteins in 64 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 882; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT1G63820.1p  transcript_id AT1G63820.1  protein_id AT1G63820.1p  transcript_id AT1G63820.1  
At1g63830	chr1:023685408	0.0	W/23685408-23685510,23685622-23685643,23685785-23685841,23685914-23685995,23686389-23686484,23686569-23686693,23686787-23686805,23686904-23687098	AT1G63830.1  CDS  gene_syn T12P18.15, T12P18_15  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|11152613|ISS  product proline-rich family protein  note proline-rich family protein; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41390.1); Has 417 Blast hits to 328 proteins in 109 species: Archae - 0; Bacteria - 18; Metazoa - 107; Fungi - 25; Plants - 144; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).  protein_id AT1G63830.1p  transcript_id AT1G63830.1  protein_id AT1G63830.1p  transcript_id AT1G63830.1  
At1g63830	chr1:023685408	0.0	W/23685408-23685510,23685622-23685643,23685785-23685841,23685914-23685995,23686389-23686484,23686569-23686693,23686787-23686805,23686904-23687098	AT1G63830.2  CDS  gene_syn T12P18.15, T12P18_15  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|11152613|ISS  product proline-rich family protein  note proline-rich family protein; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41390.1); Has 417 Blast hits to 328 proteins in 109 species: Archae - 0; Bacteria - 18; Metazoa - 107; Fungi - 25; Plants - 144; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).  protein_id AT1G63830.2p  transcript_id AT1G63830.2  protein_id AT1G63830.2p  transcript_id AT1G63830.2  
At1g63835	chr1:023688964	0.0	C/23688964-23689443	AT1G63835.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 4.7e-17 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element)  
At1g63840	chr1:023689991	0.0	C/23689991-23690491	AT1G63840.1  CDS  gene_syn T12P18.14, T12P18_14  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process response to abscisic acid stimulus|GO:0009737|16258012|IEP  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G41400.1); Has 4828 Blast hits to 4817 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 1700; Fungi - 322; Plants - 2094; Viruses - 13; Other Eukaryotes - 699 (source: NCBI BLink).  protein_id AT1G63840.1p  transcript_id AT1G63840.1  protein_id AT1G63840.1p  transcript_id AT1G63840.1  
At1g63850	chr1:023696962	0.0	W/23696962-23697660,23697761-23698708	AT1G63850.1  CDS  gene_syn T12P18.13, T12P18_13  go_function protein binding|GO:0005515||IEA  go_process biological_process|GO:0008150||ND  product PRLI-interacting factor-related  note PRLI-interacting factor-related; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: PRLI-interacting factor-related (TAIR:AT5G60050.1); Has 165 Blast hits to 165 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 165; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G63850.1p  transcript_id AT1G63850.1  protein_id AT1G63850.1p  transcript_id AT1G63850.1  
At1g63855	chr1:023700871	0.0	C/23700871-23700954,23700663-23700767,23700428-23700514,23700272-23700331	AT1G63855.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 533 Blast hits to 531 proteins in 112 species: Archae - 0; Bacteria - 17; Metazoa - 348; Fungi - 70; Plants - 51; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G63855.2p  transcript_id AT1G63855.2  protein_id AT1G63855.2p  transcript_id AT1G63855.2  
At1g63855	chr1:023700871	0.0	C/23700871-23700954,23700663-23700767,23700428-23700514,23700281-23700331,23699956-23700108	AT1G63855.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27400.1); Has 833 Blast hits to 831 proteins in 148 species: Archae - 0; Bacteria - 48; Metazoa - 485; Fungi - 126; Plants - 88; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT1G63855.1p  transcript_id AT1G63855.1  protein_id AT1G63855.1p  transcript_id AT1G63855.1  
At1g63855	chr1:023700871	0.0	C/23700871-23700954,23700663-23700767,23700428-23700514,23700281-23700331,23700011-23700108,23699557-23699722	AT1G63855.3  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27400.1); Has 816 Blast hits to 814 proteins in 147 species: Archae - 0; Bacteria - 48; Metazoa - 472; Fungi - 124; Plants - 89; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT1G63855.3p  transcript_id AT1G63855.3  protein_id AT1G63855.3p  transcript_id AT1G63855.3  
At1g63860	chr1:023705533	0.0	C/23705533-23706005,23704752-23705273,23704192-23704675,23703786-23704082,23702882-23703681,23702326-23702660,23702095-23702146,23701805-23701808	AT1G63860.2  CDS  gene_syn T12P18.12  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  product ATP binding / protein binding / transmembrane receptor  note ATP binding / protein binding / transmembrane receptor; FUNCTIONS IN: transmembrane receptor activity, protein binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat 3 (InterPro:IPR011713), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT1G63870.1).  protein_id AT1G63860.2p  transcript_id AT1G63860.2  protein_id AT1G63860.2p  transcript_id AT1G63860.2  
At1g63860	chr1:023705533	0.0	C/23705533-23706005,23704752-23705273,23704192-23704675,23703786-23704082,23702882-23703681,23702326-23702660,23702095-23702184,23701920-23701933	AT1G63860.1  CDS  gene_syn T12P18.12  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  product ATP binding / protein binding / transmembrane receptor  note ATP binding / protein binding / transmembrane receptor; FUNCTIONS IN: protein binding, transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat 3 (InterPro:IPR011713), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT1G63870.1).  protein_id AT1G63860.1p  transcript_id AT1G63860.1  protein_id AT1G63860.1p  transcript_id AT1G63860.1  
At1g63870	chr1:023711420	0.0	C/23711420-23711901,23708871-23709954,23708453-23708749,23707131-23708363	AT1G63870.1  CDS  gene_syn T12P18.11, T12P18_11  go_component chloroplast|GO:0009507||IEA  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT1G63880.1); Has 14062 Blast hits to 11252 proteins in 500 species: Archae - 12; Bacteria - 905; Metazoa - 1093; Fungi - 42; Plants - 11647; Viruses - 2; Other Eukaryotes - 361 (source: NCBI BLink).  protein_id AT1G63870.1p  transcript_id AT1G63870.1  protein_id AT1G63870.1p  transcript_id AT1G63870.1  
At1g63880	chr1:023715575	0.0	C/23715575-23716047,23714211-23715315,23713791-23714090,23712514-23713689	AT1G63880.1  CDS  gene_syn T12P18.10, T12P18_10  function Encodes a TIR-NBS-LRR class of disease resistance protein effective against Leptosphaeria maculans.  go_component intrinsic to membrane|GO:0031224||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  go_process defense response to fungus|GO:0050832|16623885|IMP  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: defense response to fungus, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT1G63870.1); Has 12377 Blast hits to 10267 proteins in 413 species: Archae - 16; Bacteria - 540; Metazoa - 588; Fungi - 41; Plants - 10814; Viruses - 8; Other Eukaryotes - 370 (source: NCBI BLink).  protein_id AT1G63880.1p  transcript_id AT1G63880.1  protein_id AT1G63880.1p  transcript_id AT1G63880.1  
At1g63900	chr1:023717056	0.0	W/23717056-23717129,23717211-23717263,23717346-23717470,23717572-23717667,23717752-23717889,23717963-23718028,23718251-23718363,23718455-23718565,23718685-23718728,23718800-23718908,23718984-23719086	AT1G63900.1  CDS  gene_syn AT1G63890, T12P18.8, T12P18_8  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: ZCF61; protein binding / zinc ion binding (TAIR:AT1G59560.1); Has 2665 Blast hits to 2573 proteins in 206 species: Archae - 0; Bacteria - 8; Metazoa - 1654; Fungi - 30; Plants - 409; Viruses - 201; Other Eukaryotes - 363 (source: NCBI BLink).  protein_id AT1G63900.1p  transcript_id AT1G63900.1  protein_id AT1G63900.1p  transcript_id AT1G63900.1  
At1g63910	chr1:023721493	0.0	C/23721493-23721625,23721235-23721364,23719968-23720817	AT1G63910.1  CDS  gene_syn AtMYB103, T12P18.7, T12P18_7, myb domain protein 103  gene AtMYB103  function member of MYB3R- and R2R3- type MYB- encoding genes  go_component nucleus|GO:0005634|18952777|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function transcription activator activity|GO:0016563|18952777|IDA  product AtMYB103 (myb domain protein 103); DNA binding / transcription activator/ transcription factor  note myb domain protein 103 (AtMYB103); FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: regulation of secondary cell wall thickening, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: ATMYB26 (MYB DOMAIN PROTEIN 26); DNA binding / transcription factor (TAIR:AT3G13890.2); Has 6323 Blast hits to 5854 proteins in 350 species: Archae - 0; Bacteria - 0; Metazoa - 641; Fungi - 309; Plants - 3788; Viruses - 6; Other Eukaryotes - 1579 (source: NCBI BLink).  protein_id AT1G63910.1p  transcript_id AT1G63910.1  protein_id AT1G63910.1p  transcript_id AT1G63910.1  
At1g63920	chr1:023726506	0.0	W/23726506-23727581	AT1G63920.1  pseudogenic_transcript  pseudo  gene_syn T12P18.6  note pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 35% identity and 1.4e-51 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}  
At1g63930	chr1:023727927	0.0	W/23727927-23729174	AT1G63930.1  CDS  gene_syn T12P18.5, T12P18_5  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF793 (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23530.1); Has 89 Blast hits to 89 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 1; Plants - 84; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G63930.1p  transcript_id AT1G63930.1  protein_id AT1G63930.1p  transcript_id AT1G63930.1  
At1g63940	chr1:023730095	0.0	W/23730095-23730104,23730195-23730369,23730447-23730546,23730639-23730716,23730916-23730987,23731138-23731256,23731371-23731455,23731577-23731666,23731827-23731928,23732041-23732130,23732262-23732342,23732473-23732544,23732628-23732722,23732815-23732903,23732991-23733053,23733153-23733193,23733415-23733534	AT1G63940.2  CDS  go_component mitochondrion|GO:0005739|17137349|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|12954611|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component stromule|GO:0010319|16923014|IDA  go_process response to cold|GO:0009409|16923014|IEP  product monodehydroascorbate reductase, putative  note monodehydroascorbate reductase, putative; FUNCTIONS IN: ATP binding; INVOLVED IN: response to cadmium ion, response to cold; LOCATED IN: mitochondrion, stromule, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027); BEST Arabidopsis thaliana protein match is: ATMDAR2; monodehydroascorbate reductase (NADH) (TAIR:AT5G03630.1); Has 19261 Blast hits to 19238 proteins in 1797 species: Archae - 414; Bacteria - 13253; Metazoa - 865; Fungi - 447; Plants - 361; Viruses - 0; Other Eukaryotes - 3921 (source: NCBI BLink).  protein_id AT1G63940.2p  transcript_id AT1G63940.2  protein_id AT1G63940.2p  transcript_id AT1G63940.2  
At1g63940	chr1:023730206	0.0	W/23730206-23730369,23730447-23730546,23730639-23730716,23730916-23730987,23731138-23731256,23731371-23731455,23731577-23731666,23731827-23731928,23732041-23732130,23732262-23732342,23732473-23732544,23732628-23732722,23732815-23732903,23732991-23733053,23733153-23733193,23733415-23733534	AT1G63940.1  CDS  go_component mitochondrion|GO:0005739|17137349|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|12954611|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component stromule|GO:0010319|16923014|IDA  go_process response to cold|GO:0009409|16923014|IEP  product monodehydroascorbate reductase, putative  note monodehydroascorbate reductase, putative; FUNCTIONS IN: ATP binding; INVOLVED IN: response to cadmium ion, response to cold; LOCATED IN: mitochondrion, stromule, chloroplast stroma, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: ATMDAR2; monodehydroascorbate reductase (NADH) (TAIR:AT5G03630.1); Has 19261 Blast hits to 19238 proteins in 1797 species: Archae - 414; Bacteria - 13253; Metazoa - 865; Fungi - 447; Plants - 361; Viruses - 0; Other Eukaryotes - 3921 (source: NCBI BLink).  protein_id AT1G63940.1p  transcript_id AT1G63940.1  protein_id AT1G63940.1p  transcript_id AT1G63940.1  
At1g63940	chr1:023730206	0.0	W/23730206-23730369,23730447-23730546,23730639-23730716,23730916-23730987,23731138-23731256,23731371-23731455,23731577-23731666,23731827-23731928,23732041-23732130,23732262-23732342,23732473-23732544,23732628-23732722,23732815-23732903,23733003-23733053,23733153-23733193,23733415-23733534	AT1G63940.4  CDS  go_component mitochondrion|GO:0005739|17137349|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|12954611|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component stromule|GO:0010319|16923014|IDA  go_process response to cold|GO:0009409|16923014|IEP  product monodehydroascorbate reductase, putative  note monodehydroascorbate reductase, putative; FUNCTIONS IN: ATP binding; INVOLVED IN: response to cadmium ion, response to cold; LOCATED IN: mitochondrion, stromule, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: ATMDAR2; monodehydroascorbate reductase (NADH) (TAIR:AT5G03630.1); Has 19259 Blast hits to 19236 proteins in 1795 species: Archae - 414; Bacteria - 13259; Metazoa - 860; Fungi - 447; Plants - 361; Viruses - 0; Other Eukaryotes - 3918 (source: NCBI BLink).  protein_id AT1G63940.4p  transcript_id AT1G63940.4  protein_id AT1G63940.4p  transcript_id AT1G63940.4  
At1g63940	chr1:023730206	0.0	W/23730206-23730369,23730447-23730546,23730639-23730716,23730916-23730987,23731138-23731256,23731371-23731455,23731577-23731666,23731827-23731928,23732041-23732130,23732262-23732342,23732473-23732544,23732628-23732722,23732815-23732917	AT1G63940.3  CDS  go_component mitochondrion|GO:0005739|17137349|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|12954611|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component stromule|GO:0010319|16923014|IDA  go_process response to cold|GO:0009409|16923014|IEP  product monodehydroascorbate reductase, putative  note monodehydroascorbate reductase, putative; FUNCTIONS IN: ATP binding; INVOLVED IN: response to cadmium ion, response to cold; LOCATED IN: mitochondrion, stromule, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: monodehydroascorbate reductase, putative (TAIR:AT3G52880.1); Has 19247 Blast hits to 19225 proteins in 1794 species: Archae - 414; Bacteria - 13255; Metazoa - 859; Fungi - 447; Plants - 359; Viruses - 0; Other Eukaryotes - 3913 (source: NCBI BLink).  protein_id AT1G63940.3p  transcript_id AT1G63940.3  protein_id AT1G63940.3p  transcript_id AT1G63940.3  
At1g63950	chr1:023735000	0.0	W/23735000-23735072,23735288-23735556	AT1G63950.1  CDS  gene_syn T12P18.3, T12P18_3  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT1G01490.2); Has 101 Blast hits to 101 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G63950.1p  transcript_id AT1G63950.1  protein_id AT1G63950.1p  transcript_id AT1G63950.1  
At1g63960	chr1:023738201	0.0	W/23738201-23738506	AT1G63960.1  CDS  gene_syn T12P18.2, T12P18_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 62 Blast hits to 62 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G63960.1p  transcript_id AT1G63960.1  protein_id AT1G63960.1p  transcript_id AT1G63960.1  
At1g63970	chr1:023740006	0.0	C/23740006-23740336,23739786-23739892,23738923-23739156	AT1G63970.2  CDS  gene_syn 2C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, ISPF, MECPS, T12P18.1, T12P18_1  gene ISPF  function Encodes a protein with 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity. The protein s activity was confirmed by heterologous expression of phenotypic complementation of the E. coli ispF mutant. Plants defective in this gene display an albino lethal phenotype.  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to light stimulus|GO:0009416|15863698|IEP  go_process chlorophyll biosynthetic process|GO:0015995|16231155|IMP  go_process carotenoid biosynthetic process|GO:0016117|16231155|IMP  go_process isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway|GO:0019288||ISS  go_function 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity|GO:0008685|16231155|IGI  go_function 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity|GO:0008685||ISS  product ISPF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase  note ISPF; FUNCTIONS IN: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity; INVOLVED IN: chlorophyll biosynthetic process, response to light stimulus, carotenoid biosynthetic process, isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core (InterPro:IPR003526); Has 4459 Blast hits to 4457 proteins in 1155 species: Archae - 0; Bacteria - 2395; Metazoa - 0; Fungi - 4; Plants - 43; Viruses - 0; Other Eukaryotes - 2017 (source: NCBI BLink).  protein_id AT1G63970.2p  transcript_id AT1G63970.2  protein_id AT1G63970.2p  transcript_id AT1G63970.2  
At1g63970	chr1:023740006	0.0	C/23740006-23740336,23739786-23739916,23738923-23739156	AT1G63970.1  CDS  gene_syn 2C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, ISPF, MECPS, T12P18.1, T12P18_1  gene ISPF  function Encodes a protein with 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity. The protein s activity was confirmed by heterologous expression of phenotypic complementation of the E. coli ispF mutant. Plants defective in this gene display an albino lethal phenotype.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process response to light stimulus|GO:0009416|15863698|IEP  go_process chlorophyll biosynthetic process|GO:0015995|16231155|IMP  go_process carotenoid biosynthetic process|GO:0016117|16231155|IMP  go_process isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway|GO:0019288||ISS  go_function 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity|GO:0008685|16231155|IGI  go_function 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity|GO:0008685||ISS  product ISPF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase  note ISPF; FUNCTIONS IN: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity; INVOLVED IN: chlorophyll biosynthetic process, response to light stimulus, carotenoid biosynthetic process, isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core (InterPro:IPR003526); Has 4498 Blast hits to 4496 proteins in 1159 species: Archae - 0; Bacteria - 2384; Metazoa - 0; Fungi - 4; Plants - 43; Viruses - 0; Other Eukaryotes - 2067 (source: NCBI BLink).  protein_id AT1G63970.1p  transcript_id AT1G63970.1  protein_id AT1G63970.1p  transcript_id AT1G63970.1  
At1g63980	chr1:023740646	0.0	W/23740646-23740723,23740812-23740896,23741194-23741270,23741365-23741401,23741492-23741652,23741857-23741953,23742041-23742201,23742277-23742567,23742664-23742786,23742989-23743054	AT1G63980.1  CDS  gene_syn F22C12.25, F22C12_25  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component intracellular|GO:0005622||ISS  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product D111/G-patch domain-containing protein  note D111/G-patch domain-containing protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D111/G-patch (InterPro:IPR000467); Has 18043 Blast hits to 8896 proteins in 443 species: Archae - 4; Bacteria - 1285; Metazoa - 6367; Fungi - 2641; Plants - 1110; Viruses - 255; Other Eukaryotes - 6381 (source: NCBI BLink).  protein_id AT1G63980.1p  transcript_id AT1G63980.1  protein_id AT1G63980.1p  transcript_id AT1G63980.1  
At1g63980	chr1:023740646	0.0	W/23740646-23740723,23740812-23740896,23741194-23741270,23741365-23741401,23741498-23741652,23741857-23741953,23742041-23742201,23742277-23742567,23742664-23742786,23742989-23743054	AT1G63980.2  CDS  gene_syn F22C12.25, F22C12_25  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component intracellular|GO:0005622||ISS  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product D111/G-patch domain-containing protein  note D111/G-patch domain-containing protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D111/G-patch (InterPro:IPR000467); Has 17835 Blast hits to 8783 proteins in 440 species: Archae - 4; Bacteria - 1279; Metazoa - 6325; Fungi - 2594; Plants - 1098; Viruses - 260; Other Eukaryotes - 6275 (source: NCBI BLink).  protein_id AT1G63980.2p  transcript_id AT1G63980.2  protein_id AT1G63980.2p  transcript_id AT1G63980.2  
At1g63990	chr1:023745268	0.0	C/23745268-23745351,23745088-23745171,23744849-23744978,23744623-23744760,23744459-23744547,23744252-23744380,23744080-23744174,23743937-23743999,23743785-23743861,23743587-23743714,23743323-23743457	AT1G63990.1  CDS  gene_syn F22C12.24, F22C12_24, SPO11-2, SPORULATION 11-2  gene SPO11-2  function Encodes AtSPO11-2, one of the three Arabidopsis homologues of the archaeal DNA topoisomerase VIA subunit (topo VIA). Required for meiotic recombination. Plants homozygous for atspo11-2 exhibit a severe sterility phenotype. Both male and female meiosis are severely disrupted in the atspo11-2 mutant, and this is associated with severe defects in synapsis during the first meiotic division and reduced meiotic recombination. AtSPO11-1 and AtSPO11-2 have overlapping functions (i.e. both required for meiotic recombination) whereas AtSPO11-3 functions in DNA replication. Required for double-strand break induction.  go_component chromosome|GO:0005694||IEA  go_function DNA binding|GO:0003677||IEA  go_function catalytic activity|GO:0003824||IEA  go_function ATP binding|GO:0005524||IEA  go_process DNA metabolic process|GO:0006259||ISS  go_process DNA topological change|GO:0006265||ISS  go_process chromosome segregation|GO:0007059|17018031|IMP  go_process meiosis|GO:0007126|17018031|IMP  go_process synapsis|GO:0007129|17018031|IMP  go_process reciprocal meiotic recombination|GO:0007131|17018031|IMP  go_process embryo sac development|GO:0009553|17018031|IMP  go_process pollen development|GO:0009555|17018031|IMP  go_process meiotic DNA double-strand break formation|GO:0042138|17965269|IGI  go_process seed development|GO:0048316|17018031|IMP  go_process floral organ development|GO:0048437|17018031|IMP  go_function DNA binding|GO:0003677||ISS  go_function DNA topoisomerase (ATP-hydrolyzing) activity|GO:0003918||ISS  go_function ATP binding|GO:0005524||ISS  product SPO11-2 (SPORULATION 11-2); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ catalytic  note SPORULATION 11-2 (SPO11-2); FUNCTIONS IN: DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, catalytic activity, ATP binding; INVOLVED IN: in 11 processes; LOCATED IN: chromosome; CONTAINS InterPro DOMAIN/s: Spo11/DNA topoisomerase VI, subunit A, N-terminal (InterPro:IPR013049), Spo11/DNA topoisomerase VI, subunit A (InterPro:IPR002815); BEST Arabidopsis thaliana protein match is: RHL2 (ROOT HAIRLESS 2); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ identical protein binding / protein binding (TAIR:AT5G02820.1); Has 648 Blast hits to 647 proteins in 211 species: Archae - 135; Bacteria - 9; Metazoa - 150; Fungi - 72; Plants - 85; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink).  protein_id AT1G63990.1p  transcript_id AT1G63990.1  protein_id AT1G63990.1p  transcript_id AT1G63990.1  
At1g64000	chr1:023747434	0.0	W/23747434-23747834,23748697-23748883	AT1G64000.1  CDS  gene_syn AtWRKY56, F22C12.23, F22C12_23, WRKY56  gene WRKY56  function member of WRKY Transcription Factor; Group II-c  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY56; transcription factor  note WRKY56; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY24; transcription factor (TAIR:AT5G41570.1); Has 2023 Blast hits to 1732 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2008; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G64000.1p  transcript_id AT1G64000.1  protein_id AT1G64000.1p  transcript_id AT1G64000.1  
At1g64010	chr1:023750884	0.0	C/23750884-23751441	AT1G64010.1  CDS  gene_syn F22C12.29, F22C12_29  go_function serine-type endopeptidase inhibitor activity|GO:0004867||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function serine-type endopeptidase inhibitor activity|GO:0004867||ISS  product serpin, putative / serine protease inhibitor, putative  note serpin, putative / serine protease inhibitor, putative; FUNCTIONS IN: serine-type endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protease inhibitor I4, serpin, plant (InterPro:IPR015554), Protease inhibitor I4, serpin (InterPro:IPR000215); BEST Arabidopsis thaliana protein match is: serpin family protein / serine protease inhibitor family protein (TAIR:AT1G64030.1); Has 3292 Blast hits to 3282 proteins in 259 species: Archae - 46; Bacteria - 177; Metazoa - 2407; Fungi - 0; Plants - 189; Viruses - 365; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT1G64010.1p  transcript_id AT1G64010.1  protein_id AT1G64010.1p  transcript_id AT1G64010.1  
At1g64020	chr1:023751756	0.0	C/23751756-23752121	AT1G64020.1  CDS  gene_syn F22C12.27, F22C12_27  go_function serine-type endopeptidase inhibitor activity|GO:0004867||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product serpin-related / serine protease inhibitor-related  note serpin-related / serine protease inhibitor-related; FUNCTIONS IN: serine-type endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protease inhibitor I4, serpin, plant (InterPro:IPR015554), Protease inhibitor I4, serpin (InterPro:IPR000215); BEST Arabidopsis thaliana protein match is: serpin family protein / serine protease inhibitor family protein (TAIR:AT1G64030.1); Has 111 Blast hits to 110 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 111; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G64020.1p  transcript_id AT1G64020.1  protein_id AT1G64020.1p  transcript_id AT1G64020.1  
At1g64030	chr1:023753956	0.0	C/23753956-23754348,23752873-23753637	AT1G64030.1  CDS  gene_syn F22C12.22, F22C12_22  go_function serine-type endopeptidase inhibitor activity|GO:0004867||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function serine-type endopeptidase inhibitor activity|GO:0004867||ISS  product serpin family protein / serine protease inhibitor family protein  note serpin family protein / serine protease inhibitor family protein; FUNCTIONS IN: serine-type endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protease inhibitor I4, serpin (InterPro:IPR000215); BEST Arabidopsis thaliana protein match is: serpin family protein / serine protease inhibitor family protein (TAIR:AT2G14540.1); Has 4694 Blast hits to 4654 proteins in 326 species: Archae - 52; Bacteria - 219; Metazoa - 3621; Fungi - 1; Plants - 222; Viruses - 417; Other Eukaryotes - 162 (source: NCBI BLink).  protein_id AT1G64030.1p  transcript_id AT1G64030.1  protein_id AT1G64030.1p  transcript_id AT1G64030.1  
At1g64035	chr1:023755496	0.0	C/23755496-23757736	AT1G64035.1  pseudogenic_transcript  pseudo  gene_syn F22C12.21  note pseudogene, putative serpin, blastp match of 55% identity and 1.1e-82 P-value to GP|26224736|gb|AAN76362.1||AY158152 serpin-like protein {Citrus x paradisi}  
At1g64040	chr1:023760097	0.0	C/23760097-23760274,23759089-23759648,23758740-23758952,23758626-23758643	AT1G64040.1  CDS  gene_syn TOPP3  gene TOPP3  function Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers.  go_component protein phosphatase type 1 complex|GO:0000164|7678768|ISS  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleolus|GO:0005730|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process protein amino acid dephosphorylation|GO:0006470|7678768|TAS  go_function protein serine/threonine phosphatase activity|GO:0004722|7678768|ISS  product TOPP3; protein serine/threonine phosphatase  note TOPP3; FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein phosphatase type 1 complex, nucleolus, nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: TOPP7; protein serine/threonine phosphatase (TAIR:AT4G11240.1); Has 5287 Blast hits to 5148 proteins in 347 species: Archae - 49; Bacteria - 116; Metazoa - 2059; Fungi - 931; Plants - 609; Viruses - 0; Other Eukaryotes - 1523 (source: NCBI BLink).  protein_id AT1G64040.1p  transcript_id AT1G64040.1  protein_id AT1G64040.1p  transcript_id AT1G64040.1  
At1g64050	chr1:023762584	0.0	W/23762584-23762773,23762955-23763263,23763440-23763565,23764036-23764376,23764507-23765023,23765100-23765132,23765224-23765714	AT1G64050.1  CDS  gene_syn F22C12.19, F22C12_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 458 Blast hits to 299 proteins in 71 species: Archae - 0; Bacteria - 52; Metazoa - 100; Fungi - 22; Plants - 11; Viruses - 0; Other Eukaryotes - 273 (source: NCBI BLink).  protein_id AT1G64050.1p  transcript_id AT1G64050.1  protein_id AT1G64050.1p  transcript_id AT1G64050.1  
At1g64060	chr1:023770266	0.0	W/23770266-23770929,23771017-23771176,23771500-23771548,23772043-23772156,23772717-23773139,23774049-23774435,23774517-23774612,23774710-23774825,23774897-23775064,23775139-23775298,23775387-23775566,23775666-23775794,23775920-23775998,23776208-23776317	AT1G64060.1  CDS  gene_syn ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F, ATRBOH F, ATRBOHF, CYTOCHROME B245 BETA CHAIN HOMOLOG RBOHAP108, F22C12.18, F22C12_18, RBOHAP108, RBOHF, RESPIRATORY BURST OXIDASE PROTEIN F  gene ATRBOH F  function Interacts with AtrbohD gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component integral to plasma membrane|GO:0005887|9490748|IMP  go_process respiratory burst during defense response|GO:0002679|18790995|IMP  go_process oxygen and reactive oxygen species metabolic process|GO:0006800|11756663|IMP  go_process defense response|GO:0006952|11756663|IMP  go_process response to ethylene stimulus|GO:0009723|16961732|IMP  go_process abscisic acid mediated signaling|GO:0009738|12773379|TAS  go_process ethylene mediated signaling pathway|GO:0009873|10381874|TAS  go_process regulation of stomatal movement|GO:0010119|16961732|IMP  go_process negative regulation of programmed cell death|GO:0043069|11756663|IMP  go_process hydrogen peroxide biosynthetic process|GO:0050665|16961732|IMP  go_process defense response to fungus|GO:0050832|18790995|IMP  go_process callose deposition during defense response|GO:0052542|18790995|IMP  go_function NAD(P)H oxidase activity|GO:0016174|12773379|TAS  product ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F); NAD(P)H oxidase  note ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F (ATRBOH F); FUNCTIONS IN: NAD(P)H oxidase activity; INVOLVED IN: in 11 processes; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-HAND 1 (InterPro:IPR018247), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), NADPH oxidase Respiratory burst (InterPro:IPR013623), Ferric reductase, NAD binding (InterPro:IPR013121), EF-HAND 2 (InterPro:IPR018249), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: respiratory burst oxidase, putative / NADPH oxidase, putative (TAIR:AT4G11230.1); Has 1628 Blast hits to 1500 proteins in 248 species: Archae - 4; Bacteria - 165; Metazoa - 625; Fungi - 430; Plants - 261; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).  protein_id AT1G64060.1p  transcript_id AT1G64060.1  protein_id AT1G64060.1p  transcript_id AT1G64060.1  
At1g64065	chr1:023778628	0.0	W/23778628-23779272	AT1G64065.1  CDS  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G44000.1); Has 69 Blast hits to 69 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G64065.1p  transcript_id AT1G64065.1  protein_id AT1G64065.1p  transcript_id AT1G64065.1  
At1g64070	chr1:023779949	0.0	W/23779949-23780421,23780674-23781766,23781898-23782194,23782319-23783449	AT1G64070.1  CDS  gene_syn F22C12.17, F22C12_17, RESISTANCE TO LEPTOSPHAERIA MACULANS 1, RLM1  gene RLM1  function Encodes a TIR-NBS-LRR class of disease resistance protein effective against Leptosphaeria maculans.  go_component intrinsic to membrane|GO:0031224||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  go_process defense response to fungus|GO:0050832|16623885|IMP  product RLM1 (RESISTANCE TO LEPTOSPHAERIA MACULANS 1); ATP binding / protein binding / transmembrane receptor  note RESISTANCE TO LEPTOSPHAERIA MACULANS 1 (RLM1); FUNCTIONS IN: transmembrane receptor activity, protein binding, ATP binding; INVOLVED IN: defense response to fungus, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: stem, sepal, flower, carpel, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat 3 (InterPro:IPR011713), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT2G16870.1); Has 12812 Blast hits to 10420 proteins in 437 species: Archae - 15; Bacteria - 594; Metazoa - 1072; Fungi - 39; Plants - 10779; Viruses - 0; Other Eukaryotes - 313 (source: NCBI BLink).  protein_id AT1G64070.1p  transcript_id AT1G64070.1  protein_id AT1G64070.1p  transcript_id AT1G64070.1  
At1g64080	chr1:023785381	0.0	C/23785381-23786557,23785230-23785288	AT1G64080.1  CDS  gene_syn F22C12.16, F22C12_16  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; Has 1461 Blast hits to 645 proteins in 136 species: Archae - 0; Bacteria - 83; Metazoa - 313; Fungi - 110; Plants - 55; Viruses - 4; Other Eukaryotes - 896 (source: NCBI BLink).  protein_id AT1G64080.1p  transcript_id AT1G64080.1  protein_id AT1G64080.1p  transcript_id AT1G64080.1  
At1g64090	chr1:023789395	0.0	W/23789395-23789584,23789824-23790004,23790089-23790230,23790318-23790387,23790485-23790669	AT1G64090.1  CDS  gene_syn F22C12.15, F22C12_15  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum|GO:0005783||ISS  go_process biological_process|GO:0008150||ND  product reticulon family protein (RTNLB3)  note reticulon family protein (RTNLB3); INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: BTI3 (VIRB2-INTERACTING PROTEIN 3) (TAIR:AT5G41600.1); Has 970 Blast hits to 970 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 664; Fungi - 15; Plants - 274; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G64090.1p  transcript_id AT1G64090.1  protein_id AT1G64090.1p  transcript_id AT1G64090.1  
At1g64100	chr1:023791585	0.0	W/23791585-23792203,23792260-23793581,23795084-23795563	AT1G64100.2  CDS  gene_syn F22C12.14  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||IEA  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G12300.1); Has 26826 Blast hits to 6710 proteins in 207 species: Archae - 3; Bacteria - 26; Metazoa - 848; Fungi - 661; Plants - 24065; Viruses - 0; Other Eukaryotes - 1223 (source: NCBI BLink).  protein_id AT1G64100.2p  transcript_id AT1G64100.2  protein_id AT1G64100.2p  transcript_id AT1G64100.2  
At1g64100	chr1:023791585	0.0	W/23791585-23792203,23792260-23793641	AT1G64100.1  CDS  gene_syn F22C12.14  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; EXPRESSED IN: flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G12300.1); Has 25496 Blast hits to 6068 proteins in 186 species: Archae - 4; Bacteria - 26; Metazoa - 821; Fungi - 625; Plants - 22774; Viruses - 0; Other Eukaryotes - 1246 (source: NCBI BLink).  protein_id AT1G64100.1p  transcript_id AT1G64100.1  protein_id AT1G64100.1p  transcript_id AT1G64100.1  
At1g64105	chr1:023795078	0.0	W/23795078-23795563	AT1G64105.1  CDS  gene_syn ANAC027, Arabidopsis NAC domain containing protein 27  gene ANAC027  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ANAC027 (Arabidopsis NAC domain containing protein 27); transcription factor  note Arabidopsis NAC domain containing protein 27 (ANAC027); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G64100.2); Has 639 Blast hits to 637 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 639; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G64105.1p  transcript_id AT1G64105.1  protein_id AT1G64105.1p  transcript_id AT1G64105.1  
At1g64107	chr1:023796501	0.0	C/23796501-23796555,23796203-23796423	AT1G64107.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G64107.1p  transcript_id AT1G64107.1  protein_id AT1G64107.1p  transcript_id AT1G64107.1  
At1g64110	chr1:023801035	0.0	C/23801035-23801240,23800401-23800522,23800237-23800325,23800105-23800143,23799917-23800010,23799734-23799782,23799522-23799613,23799368-23799438,23798783-23799282,23798612-23798699,23798398-23798514,23797738-23798306,23797468-23797606,23797316-23797384,23797106-23797222,23796887-23797000	AT1G64110.1  CDS  gene_syn F22C12.12, F22C12_12  go_component endomembrane system|GO:0012505||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATPase activity|GO:0016887||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATP binding / nucleoside-triphosphatase/ nucleotide binding (TAIR:AT5G52882.1); Has 30675 Blast hits to 28975 proteins in 1884 species: Archae - 933; Bacteria - 12078; Metazoa - 4223; Fungi - 2551; Plants - 1703; Viruses - 19; Other Eukaryotes - 9168 (source: NCBI BLink).  protein_id AT1G64110.1p  transcript_id AT1G64110.1  protein_id AT1G64110.1p  transcript_id AT1G64110.1  
At1g64110	chr1:023801035	0.0	C/23801035-23801255,23800401-23800522,23800237-23800325,23800105-23800143,23799917-23800010,23799734-23799782,23799522-23799613,23799368-23799432,23798783-23799282,23798612-23798699,23798398-23798514,23797738-23798306,23797468-23797606,23797316-23797384,23797106-23797222,23796887-23797000	AT1G64110.3  CDS  gene_syn F22C12.12, F22C12_12  go_component endomembrane system|GO:0012505||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATPase activity|GO:0016887||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATP binding / nucleoside-triphosphatase/ nucleotide binding (TAIR:AT5G52882.1); Has 30705 Blast hits to 29018 proteins in 1886 species: Archae - 934; Bacteria - 12149; Metazoa - 4206; Fungi - 2565; Plants - 1720; Viruses - 19; Other Eukaryotes - 9112 (source: NCBI BLink).  protein_id AT1G64110.3p  transcript_id AT1G64110.3  protein_id AT1G64110.3p  transcript_id AT1G64110.3  
At1g64110	chr1:023801035	0.0	C/23801035-23801255,23800401-23800522,23800237-23800325,23800105-23800143,23799917-23800010,23799734-23799782,23799522-23799613,23799368-23799438,23798783-23799282,23798612-23798699,23798398-23798514,23797738-23798306,23797468-23797606,23797316-23797384,23797106-23797222,23796887-23797000	AT1G64110.2  CDS  gene_syn F22C12.12, F22C12_12  go_component endomembrane system|GO:0012505||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATPase activity|GO:0016887||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATP binding / nucleoside-triphosphatase/ nucleotide binding (TAIR:AT5G52882.1); Has 30675 Blast hits to 28975 proteins in 1884 species: Archae - 933; Bacteria - 12078; Metazoa - 4223; Fungi - 2551; Plants - 1703; Viruses - 19; Other Eukaryotes - 9168 (source: NCBI BLink).  protein_id AT1G64110.2p  transcript_id AT1G64110.2  protein_id AT1G64110.2p  transcript_id AT1G64110.2  
At1g64120	chr1:023802553	0.0	W/23802553-23802636	AT1G64120.1  tRNA  gene_syn 51476.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: CAA)  transcript_id AT1G64120.1  
At1g64130	chr1:023802559	0.0	W/23802559-23802615,23803243-23803533	AT1G64130.1  CDS  gene_syn F22C12.11, F22C12_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 4 Blast hits to 4 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G64130.1p  transcript_id AT1G64130.1  protein_id AT1G64130.1p  transcript_id AT1G64130.1  
At1g64140	chr1:023804069	0.0	C/23804069-23806009	AT1G64140.1  CDS  gene_syn F22C12.10, F22C12_10  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: loricrin-related (TAIR:AT5G64550.1); Has 2298 Blast hits to 1429 proteins in 121 species: Archae - 0; Bacteria - 42; Metazoa - 1626; Fungi - 29; Plants - 243; Viruses - 9; Other Eukaryotes - 349 (source: NCBI BLink).  protein_id AT1G64140.1p  transcript_id AT1G64140.1  protein_id AT1G64140.1p  transcript_id AT1G64140.1  
At1g64142	chr1:023806125	0.0	C/23806125-23806187	AT1G64142.1  CDS  gene_syn CPuORF23, Conserved peptide upstream open reading frame 23  gene CPuORF23  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF23 represents a conserved upstream opening reading frame relative to major ORF AT1G64140.1  product CPuORF23 (Conserved peptide upstream open reading frame 23)  note Conserved peptide upstream open reading frame 23 (CPuORF23); Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G64142.1p  transcript_id AT1G64142.1  protein_id AT1G64142.1p  transcript_id AT1G64142.1  
At1g64150	chr1:023812410	0.0	C/23812410-23812579,23812228-23812312,23811764-23811991,23811613-23811666,23811458-23811519,23811277-23811345,23811147-23811198,23810692-23810763,23810475-23810604,23810315-23810385,23810078-23810125,23809047-23809118	AT1G64150.1  CDS  gene_syn F22C12.9, F22C12_9  go_component chloroplast|GO:0009507||IEA  go_component membrane|GO:0016020||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0016 (InterPro:IPR001727); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13590.1); Has 1123 Blast hits to 1004 proteins in 367 species: Archae - 14; Bacteria - 549; Metazoa - 134; Fungi - 129; Plants - 103; Viruses - 0; Other Eukaryotes - 194 (source: NCBI BLink).  protein_id AT1G64150.1p  transcript_id AT1G64150.1  protein_id AT1G64150.1p  transcript_id AT1G64150.1  
At1g64160	chr1:023814063	0.0	W/23814063-23814611	AT1G64160.1  CDS  gene_syn F22C12.8, F22C12_8  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_process lignan biosynthetic process|GO:0009807||ISS  go_function molecular_function|GO:0003674||ND  product disease resistance-responsive family protein / dirigent family protein  note disease resistance-responsive family protein / dirigent family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lignan biosynthetic process, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: petal, hypocotyl, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: disease resistance-responsive family protein / dirigent family protein (TAIR:AT4G23690.1); Has 440 Blast hits to 439 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 440; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G64160.1p  transcript_id AT1G64160.1  protein_id AT1G64160.1p  transcript_id AT1G64160.1  
At1g64170	chr1:023818075	0.0	C/23818075-23818293,23816542-23817546,23815239-23816450	AT1G64170.1  CDS  gene_syn ATCHX16, CATION/H+ EXCHANGER 16, CHX16, F22C12.7, F22C12_7  gene ATCHX16  function member of Putative Na+/H+ antiporter family  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|IC  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product ATCHX16 (CATION/H+ EXCHANGER 16); monovalent cation:proton antiporter/ sodium:hydrogen antiporter  note CATION/H+ EXCHANGER 16 (ATCHX16); FUNCTIONS IN: monovalent cation:proton antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: stem, hypocotyl, male gametophyte, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: ATCHX17 (CATION/H+ EXCHANGER 17); monovalent cation:proton antiporter/ sodium:hydrogen antiporter (TAIR:AT4G23700.1); Has 6082 Blast hits to 6062 proteins in 1189 species: Archae - 231; Bacteria - 4436; Metazoa - 52; Fungi - 134; Plants - 291; Viruses - 0; Other Eukaryotes - 938 (source: NCBI BLink).  protein_id AT1G64170.1p  transcript_id AT1G64170.1  protein_id AT1G64170.1p  transcript_id AT1G64170.1  
At1g64180	chr1:023821640	0.0	W/23821640-23822026,23822799-23824193	AT1G64180.1  CDS  gene_syn F22C12.6, F22C12_6  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product intracellular protein transport protein USO1-related  note intracellular protein transport protein USO1-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41620.1); Has 2413 Blast hits to 1946 proteins in 255 species: Archae - 9; Bacteria - 164; Metazoa - 1461; Fungi - 162; Plants - 118; Viruses - 17; Other Eukaryotes - 482 (source: NCBI BLink).  protein_id AT1G64180.1p  transcript_id AT1G64180.1  protein_id AT1G64180.1p  transcript_id AT1G64180.1  
At1g64185	chr1:023824527	0.0	W/23824527-23824690,23824866-23825001,23825096-23825152	AT1G64185.1  CDS  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function catalytic activity|GO:0003824||ISS  product lactoylglutathione lyase family protein / glyoxalase I family protein  note lactoylglutathione lyase family protein / glyoxalase I family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: lactoylglutathione lyase family protein / glyoxalase I family protein (TAIR:AT5G41650.1); Has 43 Blast hits to 43 proteins in 18 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G64185.1p  transcript_id AT1G64185.1  protein_id AT1G64185.1p  transcript_id AT1G64185.1  
At1g64190	chr1:023825549	0.0	C/23825549-23827012	AT1G64190.1  CDS  gene_syn F22C12.5, F22C12_5  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function catalytic activity|GO:0003824||IEA  go_function phosphogluconate dehydrogenase (decarboxylating) activity|GO:0004616||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_function coenzyme binding|GO:0050662||IEA  go_function phosphogluconate dehydrogenase (decarboxylating) activity|GO:0004616||ISS  product 6-phosphogluconate dehydrogenase family protein  note 6-phosphogluconate dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), 6-phosphogluconate dehydrogenase, decarboxylating (InterPro:IPR006113), 6-phosphogluconate dehydrogenase, C-terminal (InterPro:IPR006114), 6-phosphogluconate dehydrogenase (InterPro:IPR006183), NAD(P)-binding (InterPro:IPR016040), Fibritin/6-phosphogluconate dehydrogenase, C-terminal extension (InterPro:IPR012284); BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase family protein (TAIR:AT5G41670.2); Has 8640 Blast hits to 8571 proteins in 1490 species: Archae - 50; Bacteria - 4787; Metazoa - 524; Fungi - 177; Plants - 212; Viruses - 2; Other Eukaryotes - 2888 (source: NCBI BLink).  protein_id AT1G64190.1p  transcript_id AT1G64190.1  protein_id AT1G64190.1p  transcript_id AT1G64190.1  
At1g64195	chr1:023827990	0.0	C/23827990-23828048,23827711-23827870	AT1G64195.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69825.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G64195.1p  transcript_id AT1G64195.1  protein_id AT1G64195.1p  transcript_id AT1G64195.1  
At1g64200	chr1:023829901	0.0	C/23829901-23830002,23829584-23829684,23829200-23829374,23828918-23829114,23828732-23828831,23828537-23828575	AT1G64200.1  CDS  gene_syn F22C12.4, F22C12_4, VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 3, VHA-E3  gene VHA-E3  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_function proton-transporting ATPase activity, rotational mechanism|GO:0046961||IEA  go_component mitochondrial proton-transporting ATP synthase complex|GO:0005753||ISS  go_process ATP synthesis coupled proton transport|GO:0015986||ISS  product VHA-E3 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 3); proton-transporting ATPase, rotational mechanism  note VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 3 (VHA-E3); FUNCTIONS IN: proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: plasma membrane, vacuole, mitochondrial proton-transporting ATP synthase complex; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, V1/A1 complex, subunit E (InterPro:IPR002842); BEST Arabidopsis thaliana protein match is: TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1); proton-transporting ATPase, rotational mechanism (TAIR:AT4G11150.1); Has 579 Blast hits to 579 proteins in 214 species: Archae - 54; Bacteria - 8; Metazoa - 200; Fungi - 95; Plants - 83; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).  protein_id AT1G64200.1p  transcript_id AT1G64200.1  protein_id AT1G64200.1p  transcript_id AT1G64200.1  
At1g64210	chr1:023831033	0.0	W/23831033-23832209,23832277-23832863	AT1G64210.1  CDS  gene_syn F22C12.3, F22C12_3  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: mitochondrion; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT4G23740.1); Has 96530 Blast hits to 69832 proteins in 2339 species: Archae - 52; Bacteria - 5586; Metazoa - 34720; Fungi - 4247; Plants - 40406; Viruses - 272; Other Eukaryotes - 11247 (source: NCBI BLink).  protein_id AT1G64210.1p  transcript_id AT1G64210.1  protein_id AT1G64210.1p  transcript_id AT1G64210.1  
At1g64220	chr1:023833088	0.0	C/23833088-23833321	AT1G64220.1  CDS  gene_syn F22C12.30, F22C12_30, TOM7-2, TRANSLOCASE OF OUTER MEMBRANE 7 KDA SUBUNIT 2  gene TOM7-2  go_component mitochondrial outer membrane|GO:0005741||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||IEA  product TOM7-2 (TRANSLOCASE OF OUTER MEMBRANE 7 KDA SUBUNIT 2); P-P-bond-hydrolysis-driven protein transmembrane transporter  note TRANSLOCASE OF OUTER MEMBRANE 7 KDA SUBUNIT 2 (TOM7-2); FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport; LOCATED IN: mitochondrial outer membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial import translocase, subunit Tom7 (InterPro:IPR012621); BEST Arabidopsis thaliana protein match is: mitochondrial import receptor subunit TOM7 / translocase of outer membrane 7 kDa subunit (TOM7.1) (TAIR:AT5G41685.1); Has 33 Blast hits to 33 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G64220.1p  transcript_id AT1G64220.1  protein_id AT1G64220.1p  transcript_id AT1G64220.1  
At1g64230	chr1:023833792	0.0	W/23833792-23833861,23834477-23834602,23834692-23834819,23834886-23834990,23835077-23835220	AT1G64230.4  CDS  gene_syn F22C12.2, F22C12_2, UBC28, UBIQUITIN-CONJUGATING ENZYME 28, UBIQUITIN-CONJUGATING ENZYME28  gene UBC28  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product ubiquitin-conjugating enzyme, putative  note UBIQUITIN-CONJUGATING ENZYME 28 (UBC28); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC9 (UBIQUITIN CONJUGATING ENZYME 9); ubiquitin-protein ligase (TAIR:AT4G27960.2).  protein_id AT1G64230.4p  transcript_id AT1G64230.4  protein_id AT1G64230.4p  transcript_id AT1G64230.4  
At1g64230	chr1:023833792	0.0	W/23833792-23833861,23834566-23834592,23834692-23834819,23834886-23834990,23835077-23835220	AT1G64230.3  CDS  gene_syn F22C12.2, F22C12_2, UBC28, UBIQUITIN-CONJUGATING ENZYME 28, UBIQUITIN-CONJUGATING ENZYME28  gene UBC28  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product ubiquitin-conjugating enzyme, putative  note UBIQUITIN-CONJUGATING ENZYME 28 (UBC28); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC9 (UBIQUITIN CONJUGATING ENZYME 9); ubiquitin-protein ligase (TAIR:AT4G27960.2).  protein_id AT1G64230.3p  transcript_id AT1G64230.3  protein_id AT1G64230.3p  transcript_id AT1G64230.3  
At1g64230	chr1:023833792	0.0	W/23833792-23833861,23834692-23834819,23834886-23834990,23835077-23835220	AT1G64230.1  CDS  gene_syn F22C12.2, F22C12_2, UBC28, UBIQUITIN-CONJUGATING ENZYME 28, UBIQUITIN-CONJUGATING ENZYME28  gene UBC28  go_component plasma membrane|GO:0005886|17644812|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product ubiquitin-conjugating enzyme, putative  note UBIQUITIN-CONJUGATING ENZYME 28 (UBC28); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC9 (UBIQUITIN CONJUGATING ENZYME 9); ubiquitin-protein ligase (TAIR:AT4G27960.2); Has 7853 Blast hits to 7832 proteins in 309 species: Archae - 0; Bacteria - 0; Metazoa - 3768; Fungi - 1529; Plants - 1147; Viruses - 22; Other Eukaryotes - 1387 (source: NCBI BLink).  protein_id AT1G64230.1p  transcript_id AT1G64230.1  protein_id AT1G64230.1p  transcript_id AT1G64230.1  
At1g64230	chr1:023833792	0.0	W/23833792-23833861,23834692-23834819,23834886-23834990,23835077-23835220	AT1G64230.2  CDS  gene_syn F22C12.2, F22C12_2, UBC28, UBIQUITIN-CONJUGATING ENZYME 28, UBIQUITIN-CONJUGATING ENZYME28  gene UBC28  go_component plasma membrane|GO:0005886|17644812|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product ubiquitin-conjugating enzyme, putative  note UBIQUITIN-CONJUGATING ENZYME 28 (UBC28); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC9 (UBIQUITIN CONJUGATING ENZYME 9); ubiquitin-protein ligase (TAIR:AT4G27960.2); Has 7853 Blast hits to 7832 proteins in 309 species: Archae - 0; Bacteria - 0; Metazoa - 3768; Fungi - 1529; Plants - 1147; Viruses - 22; Other Eukaryotes - 1387 (source: NCBI BLink).  protein_id AT1G64230.2p  transcript_id AT1G64230.2  protein_id AT1G64230.2p  transcript_id AT1G64230.2  
At1g64235	chr1:023836249	0.0	W/23836249-23836620	AT1G64235.1  CDS  go_process lipid transport|GO:0006869||IEA  go_component membrane|GO:0016020|11152613|ISS  go_function molecular_function|GO:0003674||ND  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lipid transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT3G57310.1); Has 52 Blast hits to 51 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G64235.1p  transcript_id AT1G64235.1  protein_id AT1G64235.1p  transcript_id AT1G64235.1  
At1g64240	chr1:023837561	0.0	W/23837561-23839897	AT1G64240.1  mRNA_TE_gene  pseudo  gene_syn F22C12.1, F22C12_1  note Transposable element gene, Mutator-like transposase family, has a 1.1e-18 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At1g64250	chr1:023840888	0.0	W/23840888-23843251	AT1G64250.1  mRNA_TE_gene  pseudo  gene_syn F22C12.32  note Transposable element gene, Mutator-like transposase family, has a 2.2e-20 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At1g64255	chr1:023844954	0.0	W/23844954-23847206	AT1G64255.1  CDS  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product SWIM zinc finger family protein  note SWIM zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, SWIM-type (InterPro:IPR007527), MULE transposase, conserved domain (InterPro:IPR018289), Zinc finger, PMZ-type (InterPro:IPR006564), Transposase, MuDR, plant (InterPro:IPR004332); BEST Arabidopsis thaliana protein match is: zinc finger protein-related (TAIR:AT1G64260.1); Has 889 Blast hits to 852 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 885; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G64255.1p  transcript_id AT1G64255.1  protein_id AT1G64255.1p  transcript_id AT1G64255.1  
At1g64260	chr1:023847756	0.0	W/23847756-23849915	AT1G64260.1  CDS  gene_syn F22C12.28, F22C12_28  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product zinc finger protein-related  note zinc finger protein-related; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, leaf whorl, embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527), Transposase, MuDR, plant (InterPro:IPR004332); BEST Arabidopsis thaliana protein match is: SWIM zinc finger family protein (TAIR:AT1G64255.1); Has 987 Blast hits to 945 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 983; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G64260.1p  transcript_id AT1G64260.1  protein_id AT1G64260.1p  transcript_id AT1G64260.1  
At1g64270	chr1:023850572	0.0	W/23850572-23852785	AT1G64270.1  mRNA_TE_gene  pseudo  gene_syn F15H21.14, F15H21_14  note Transposable element gene, Mutator-like transposase family, has a 1.0e-06 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At1g64280	chr1:023854847	0.0	C/23854847-23855407,23854032-23854767,23853720-23853923,23853329-23853609	AT1G64280.1  CDS  gene_syn F15H21.6, F15H21_6, NIM1, NON-INDUCIBLE IMMUNITY 1, NONEXPRESSER OF PR GENES 1, NPR1, REGULATORY PROTEIN NPR1, SAI1, SALICYLIC ACID INSENSITIVE 1  gene NPR1  function This gene is a key regulator of the salicylic acid (SA)-mediated systemic acquired resistance (SAR) pathway. It is similar to the transcription factor inhibitor I kappa B, and contains ankyrin repeats. It confers resistance to the pathogens Pseudomonas syringae and Peronospora parasitica in a dosage-dependent fashion. Although transgenic Arabidopsis plants overexpressing NPR1 acquire enhanced sensitivity to SA and (benzothiadiazole) BTH, they display no obvious detrimental morphological changes and do not have elevated pathogenesis-related gene expression until activated by inducers or pathogens.  go_component nucleus|GO:0005634|10662863|IDA  go_component nucleus|GO:0005634||IDA  go_component cytoplasm|GO:0005737|10662863|IDA  go_process cell death|GO:0008219|10978297|IGI  go_process response to heat|GO:0009408|15923322|IMP  go_process response to wounding|GO:0009611|11891259|IMP  go_process response to bacterium|GO:0009617|11418339|TAS  go_process response to bacterium|GO:0009617|15842626|IMP  go_process response to insect|GO:0009625|15923339|IMP  go_process systemic acquired resistance|GO:0009627|11418339|TAS  go_process systemic acquired resistance|GO:0009627|17419843|IEP  go_process systemic acquired resistance, salicylic acid mediated signaling pathway|GO:0009862|11418339|TAS  go_process systemic acquired resistance, salicylic acid mediated signaling pathway|GO:0009862|9019406|TAS  go_process negative regulation of defense response|GO:0031348|16732289|IMP  go_process defense response to fungus|GO:0050832|17513501|IMP  go_function protein binding|GO:0005515||ISS  go_function transcription activator activity|GO:0016563|17172357|IDA  product NPR1 (NONEXPRESSER OF PR GENES 1); protein binding / transcription activator  note NONEXPRESSER OF PR GENES 1 (NPR1); FUNCTIONS IN: protein binding, transcription activator activity; INVOLVED IN: in 9 processes; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein / BTB/POZ domain-containing protein (TAIR:AT4G26120.1); Has 4624 Blast hits to 2921 proteins in 191 species: Archae - 2; Bacteria - 231; Metazoa - 1997; Fungi - 66; Plants - 668; Viruses - 16; Other Eukaryotes - 1644 (source: NCBI BLink).  protein_id AT1G64280.1p  transcript_id AT1G64280.1  protein_id AT1G64280.1p  transcript_id AT1G64280.1  
At1g64290	chr1:023857394	0.0	C/23857394-23858488	AT1G64290.1  CDS  gene_syn F15H21.5, F15H21_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box protein-related  note F-box protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein-related (TAIR:AT1G64295.1); Has 79 Blast hits to 77 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G64290.1p  transcript_id AT1G64290.1  protein_id AT1G64290.1p  transcript_id AT1G64290.1  
At1g64295	chr1:023860135	0.0	C/23860135-23860624,23859554-23860038	AT1G64295.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box protein-related (TAIR:AT1G64290.1); Has 19 Blast hits to 19 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G64295.1p  transcript_id AT1G64295.1  protein_id AT1G64295.1p  transcript_id AT1G64295.1  
At1g64300	chr1:023863543	0.0	W/23863543-23865499,23865580-23865776	AT1G64300.1  CDS  gene_syn F15H21.13, F15H21_13  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Protein of unknown function DUF1221 (InterPro:IPR010632), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G41730.1); Has 57758 Blast hits to 57382 proteins in 1547 species: Archae - 35; Bacteria - 3482; Metazoa - 27181; Fungi - 4162; Plants - 12706; Viruses - 211; Other Eukaryotes - 9981 (source: NCBI BLink).  protein_id AT1G64300.1p  transcript_id AT1G64300.1  protein_id AT1G64300.1p  transcript_id AT1G64300.1  
At1g64300	chr1:023863543	0.0	W/23863543-23865499,23865580-23865776	AT1G64300.2  CDS  gene_syn F15H21.13, F15H21_13  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Protein of unknown function DUF1221 (InterPro:IPR010632), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G41730.1); Has 57758 Blast hits to 57382 proteins in 1547 species: Archae - 35; Bacteria - 3482; Metazoa - 27181; Fungi - 4162; Plants - 12706; Viruses - 211; Other Eukaryotes - 9981 (source: NCBI BLink).  protein_id AT1G64300.2p  transcript_id AT1G64300.2  protein_id AT1G64300.2p  transcript_id AT1G64300.2  
At1g64310	chr1:023866053	0.0	W/23866053-23867711	AT1G64310.1  CDS  gene_syn F15H21.19, F15H21_19  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: shoot apex; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: DOT4 (DEFECTIVELY ORGANIZED TRIBUTARIES 4) (TAIR:AT4G18750.1); Has 13157 Blast hits to 4576 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 67; Fungi - 28; Plants - 12895; Viruses - 0; Other Eukaryotes - 167 (source: NCBI BLink).  protein_id AT1G64310.1p  transcript_id AT1G64310.1  protein_id AT1G64310.1p  transcript_id AT1G64310.1  
At1g64320	chr1:023869036	0.0	W/23869036-23869664,23869747-23870548	AT1G64320.1  CDS  gene_syn F15H21.20, F15H21_20  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product myosin heavy chain-related  note myosin heavy chain-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT5G41780.1); Has 96324 Blast hits to 48001 proteins in 1730 species: Archae - 1204; Bacteria - 9709; Metazoa - 48692; Fungi - 7151; Plants - 3452; Viruses - 410; Other Eukaryotes - 25706 (source: NCBI BLink).  protein_id AT1G64320.1p  transcript_id AT1G64320.1  protein_id AT1G64320.1p  transcript_id AT1G64320.1  
At1g64330	chr1:023872172	0.0	W/23872172-23872265,23872397-23873970	AT1G64330.1  CDS  gene_syn F15H21.4, F15H21_4  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product myosin heavy chain-related  note myosin heavy chain-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: CIP1 (COP1-INTERACTIVE PROTEIN 1); protein binding (TAIR:AT5G41790.1); Has 168429 Blast hits to 79608 proteins in 2316 species: Archae - 2047; Bacteria - 24148; Metazoa - 79529; Fungi - 12092; Plants - 5942; Viruses - 813; Other Eukaryotes - 43858 (source: NCBI BLink).  protein_id AT1G64330.1p  transcript_id AT1G64330.1  protein_id AT1G64330.1p  transcript_id AT1G64330.1  
At1g64340	chr1:023878125	0.0	W/23878125-23878356,23878490-23879038,23880625-23880635	AT1G64340.1  CDS  gene_syn F15H21.3, F15H21_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41810.1); Has 38 Blast hits to 38 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 18; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G64340.1p  transcript_id AT1G64340.1  protein_id AT1G64340.1p  transcript_id AT1G64340.1  
At1g64350	chr1:023881582	0.0	W/23881582-23881852,23881926-23882026,23882105-23882182,23882261-23882416,23882505-23882617,23882715-23882841,23882939-23883073	AT1G64350.1  CDS  gene_syn F15H21.21, SEH1H  gene SEH1H  function seh1-like protein  go_component chloroplast|GO:0009507||IEA  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_function nucleotide binding|GO:0000166||ISS  product SEH1H; nucleotide binding  note SEH1H; FUNCTIONS IN: nucleotide binding; LOCATED IN: chloroplast, heterotrimeric G-protein complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT2G30050.1); Has 890 Blast hits to 818 proteins in 176 species: Archae - 0; Bacteria - 171; Metazoa - 265; Fungi - 267; Plants - 117; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT1G64350.1p  transcript_id AT1G64350.1  protein_id AT1G64350.1p  transcript_id AT1G64350.1  
At1g64355	chr1:023886152	0.0	W/23886152-23886533,23886655-23886672,23886788-23886987	AT1G64355.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 254 Blast hits to 254 proteins in 74 species: Archae - 0; Bacteria - 124; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT1G64355.1p  transcript_id AT1G64355.1  protein_id AT1G64355.1p  transcript_id AT1G64355.1  
At1g64355	chr1:023886152	0.0	W/23886152-23886533,23886655-23886764	AT1G64355.2  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 107 Blast hits to 107 proteins in 44 species: Archae - 0; Bacteria - 69; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G64355.2p  transcript_id AT1G64355.2  protein_id AT1G64355.2p  transcript_id AT1G64355.2  
At1g64360	chr1:023887928	0.0	W/23887928-23888185	AT1G64360.1  CDS  gene_syn F15H21.8, F15H21_8  go_component cellular_component|GO:0005575||ND  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 9 growth stages; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G64360.1p  transcript_id AT1G64360.1  protein_id AT1G64360.1p  transcript_id AT1G64360.1  
At1g64370	chr1:023888967	0.0	W/23888967-23889503	AT1G64370.1  CDS  gene_syn F15H21.1, F15H21_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; Has 728 Blast hits to 326 proteins in 99 species: Archae - 0; Bacteria - 68; Metazoa - 413; Fungi - 102; Plants - 26; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT1G64370.1p  transcript_id AT1G64370.1  protein_id AT1G64370.1p  transcript_id AT1G64370.1  
At1g64380	chr1:023890981	0.0	C/23890981-23891988	AT1G64380.1  CDS  gene_syn F15H21.12, F15H21_12  function encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to chitin|GO:0010200|17722694|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to chitin, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: RAP2.4 (related to AP2 4); DNA binding / transcription factor (TAIR:AT1G78080.1); Has 3850 Blast hits to 3719 proteins in 202 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 3835; Viruses - 4; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G64380.1p  transcript_id AT1G64380.1  protein_id AT1G64380.1p  transcript_id AT1G64380.1  
At1g64385	chr1:023900309	0.0	W/23900309-23900368,23900459-23900822,23900920-23901047,23901453-23901956	AT1G64385.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 37 Blast hits to 37 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 4; Plants - 22; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G64385.1p  transcript_id AT1G64385.1  protein_id AT1G64385.1p  transcript_id AT1G64385.1  
At1g64390	chr1:023911329	0.0	W/23911329-23911526,23911724-23911936,23912061-23912261,23913022-23913111,23913205-23913369,23913473-23914106,23914200-23914268,23914350-23914642	AT1G64390.1  CDS  gene_syn Arabidopsis thaliana glycosyl hydrolase 9C2, AtGH9C2, F15H21.9, F15H21_9  gene AtGH9C2  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function carbohydrate binding|GO:0030246||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product AtGH9C2 (Arabidopsis thaliana glycosyl hydrolase 9C2); carbohydrate binding / catalytic/ hydrolase, hydrolyzing O-glycosyl compounds  note Arabidopsis thaliana glycosyl hydrolase 9C2 (AtGH9C2); FUNCTIONS IN: carbohydrate binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Carbohydrate-binding (InterPro:IPR008965), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: AtGH9C3 (Arabidopsis thaliana glycosyl hydrolase 9C3); carbohydrate binding / catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT4G11050.1); Has 1169 Blast hits to 1156 proteins in 190 species: Archae - 0; Bacteria - 327; Metazoa - 138; Fungi - 14; Plants - 625; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT1G64390.1p  transcript_id AT1G64390.1  protein_id AT1G64390.1p  transcript_id AT1G64390.1  
At1g64400	chr1:023919527	0.0	C/23919527-23919681,23919188-23919251,23918999-23919088,23918788-23918844,23918611-23918659,23918444-23918520,23918188-23918227,23918019-23918113,23917775-23917942,23917577-23917687,23917404-23917491,23917248-23917314,23917090-23917165,23916489-23916992,23916231-23916413,23916018-23916137,23915802-23915855	AT1G64400.1  CDS  gene_syn F15H21.7, F15H21_7  go_function catalytic activity|GO:0003824||IEA  go_process fatty acid biosynthetic process|GO:0006633|9106514|TAS  product long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative  note long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative; FUNCTIONS IN: catalytic activity; INVOLVED IN: fatty acid biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetase (TAIR:AT4G23850.1); Has 37136 Blast hits to 34958 proteins in 1973 species: Archae - 490; Bacteria - 19607; Metazoa - 2102; Fungi - 1252; Plants - 1156; Viruses - 1; Other Eukaryotes - 12528 (source: NCBI BLink).  protein_id AT1G64400.1p  transcript_id AT1G64400.1  protein_id AT1G64400.1p  transcript_id AT1G64400.1  
At1g64405	chr1:023923800	0.0	W/23923800-23924156	AT1G64405.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G64405.1p  transcript_id AT1G64405.1  protein_id AT1G64405.1p  transcript_id AT1G64405.1  
At1g64410	chr1:023926393	0.0	C/23926393-23932203	AT1G64410.1  mRNA_TE_gene  pseudo  gene_syn F15H21.18, F15H21_18  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52960.1); similar to helicase-related [Arabidopsis thaliana] (TAIR:AT3G43350.1); similar to AT hook motif-containing protein-related [Arabidopsis thaliana] (TAIR:AT3G42100.1); similar to hypothetical protein 31.t00030 [Brassica oleracea] (GB:ABD65117.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Protein of unknown function DUF889, eukaryote; (InterPro:IPR010285)  
At1g64420	chr1:023933137	0.0	W/23933137-23933209	AT1G64420.1  tRNA  gene_syn 51638.TRNA-ALA-1, 60083.TRNA-ALA-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: CGC)  transcript_id AT1G64420.1  
At1g64430	chr1:023933541	0.0	W/23933541-23933955,23934045-23934196,23934287-23934364,23934450-23934529,23934713-23934797,23934882-23935298,23935387-23935494,23935579-23935646,23935734-23935821,23935915-23935986,23936069-23936122,23936274-23936336	AT1G64430.1  CDS  gene_syn F15H21.10, F15H21_10  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); Has 22 Blast hits to 22 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G64430.1p  transcript_id AT1G64430.1  protein_id AT1G64430.1p  transcript_id AT1G64430.1  
At1g64430	chr1:023933541	0.0	W/23933541-23933955,23934045-23934196,23934287-23934364,23934450-23934529,23934713-23934797,23934882-23935298,23935387-23935494,23935579-23935646,23935734-23935821,23935915-23935986,23936069-23936122,23936274-23936336	AT1G64430.2  CDS  gene_syn F15H21.10, F15H21_10  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); Has 22 Blast hits to 22 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G64430.2p  transcript_id AT1G64430.2  protein_id AT1G64430.2p  transcript_id AT1G64430.2  
At1g64440	chr1:023937102	0.0	W/23937102-23937284,23937534-23937583,23937848-23937983,23938089-23938190,23938276-23938503,23938885-23938963,23939068-23939150,23939282-23939373,23939472-23939565	AT1G64440.1  CDS  gene_syn F15H21.11, F15H21_11, REB1, RHD1, ROOT EPIDERMAL BULGER1, ROOT HAIR DEFECTIVE 1, UDP-GLUCOSE 4-EPIMERASE, UGE4  gene RHD1  function Encodes a protein with UDP-D-glucose 4-epimerase activity. Mutants in RHD1 have abnormally shaped root hairs with a bulbous region at the base. Allelic to REB1 encoding a UDP-D-glucose 4-epimerase involved in cell wall biosynthesis.Involved in growth and cell wall carbohydrate biosynthesis.  go_component Golgi stack|GO:0005795|16644739|IDA  go_process plant-type cell wall biogenesis|GO:0009832|12419184|TAS  go_process xyloglucan biosynthetic process|GO:0009969|16500990|IMP  go_process root epidermal cell differentiation|GO:0010053|12354956|IMP  go_process rhamnogalacturonan I biosynthetic process|GO:0010246|16500990|IMP  go_process rhamnogalacturonan II biosynthetic process|GO:0010306|16500990|IMP  go_process cell wall biogenesis|GO:0042546|17496119|IMP  go_function UDP-glucose 4-epimerase activity|GO:0003978|12419184|TAS  go_function UDP-glucose 4-epimerase activity|GO:0003978|16644739|IDA  go_function UDP-glucose 4-epimerase activity|GO:0003978|16644739|IGI  go_function UDP-glucose 4-epimerase activity|GO:0003978|17496119|IDA  go_function protein dimerization activity|GO:0046983|16644739|IPI  product RHD1 (ROOT HAIR DEFECTIVE 1); UDP-glucose 4-epimerase/ protein dimerization  note ROOT HAIR DEFECTIVE 1 (RHD1); FUNCTIONS IN: UDP-glucose 4-epimerase activity, protein dimerization activity; INVOLVED IN: in 6 processes; LOCATED IN: Golgi stack; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886); BEST Arabidopsis thaliana protein match is: UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2); UDP-glucose 4-epimerase/ protein dimerization (TAIR:AT4G23920.1); Has 28041 Blast hits to 28021 proteins in 1696 species: Archae - 469; Bacteria - 13576; Metazoa - 549; Fungi - 358; Plants - 625; Viruses - 33; Other Eukaryotes - 12431 (source: NCBI BLink).  protein_id AT1G64440.1p  transcript_id AT1G64440.1  protein_id AT1G64440.1p  transcript_id AT1G64440.1  
At1g64450	chr1:023941758	0.0	C/23941758-23942786	AT1G64450.1  CDS  gene_syn F15H21.17  product proline-rich family protein  note proline-rich family protein; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23930.1); Has 55391 Blast hits to 14935 proteins in 827 species: Archae - 23; Bacteria - 4278; Metazoa - 41744; Fungi - 1960; Plants - 2498; Viruses - 975; Other Eukaryotes - 3913 (source: NCBI BLink).  protein_id AT1G64450.1p  transcript_id AT1G64450.1  protein_id AT1G64450.1p  transcript_id AT1G64450.1  
At1g64460	chr1:023944153	0.0	C/23944153-23944680,23943688-23944065	AT1G64460.1  CDS  gene_syn F1N19.4, F1N19_4  go_component vacuole|GO:0005773|15539469|IDA  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_process biological_process|GO:0008150||ND  go_function inositol or phosphatidylinositol kinase activity|GO:0004428||ISS  product phosphatidylinositol 3- and 4-kinase family protein  note phosphatidylinositol 3- and 4-kinase family protein; FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3- and 4-kinase, catalytic (InterPro:IPR000403); BEST Arabidopsis thaliana protein match is: phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein (TAIR:AT2G46500.2); Has 229 Blast hits to 224 proteins in 54 species: Archae - 0; Bacteria - 10; Metazoa - 23; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT1G64460.1p  transcript_id AT1G64460.1  protein_id AT1G64460.1p  transcript_id AT1G64460.1  
At1g64470	chr1:023944785	0.0	C/23944785-23945426	AT1G64470.1  CDS  gene_syn F1N19.30, F1N19_30  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product ubiquitin family protein  note ubiquitin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein (TAIR:AT2G46500.2); Has 6200 Blast hits to 2798 proteins in 512 species: Archae - 0; Bacteria - 2; Metazoa - 2642; Fungi - 704; Plants - 1536; Viruses - 92; Other Eukaryotes - 1224 (source: NCBI BLink).  protein_id AT1G64470.1p  transcript_id AT1G64470.1  protein_id AT1G64470.1p  transcript_id AT1G64470.1  
At1g64480	chr1:023949661	0.0	C/23949661-23949751,23949401-23949483,23949215-23949274,23948961-23949069,23948821-23948873,23948427-23948507,23948167-23948279,23948028-23948082	AT1G64480.1  CDS  gene_syn CALCINEURIN B-LIKE PROTEIN 8, CBL8, F1N19.5, F1N19_5  gene CBL8  function calcineurin B-like protein 8, member of plant-specific family of calcium sensor proteins containing 3 EF-hand motifs  go_component cellular_component|GO:0005575||ND  go_process calcium-mediated signaling|GO:0019722|12045290|TAS  go_function calcium ion binding|GO:0005509|11230129|ISS  go_function calcium ion binding|GO:0005509||ISS  product CBL8 (CALCINEURIN B-LIKE PROTEIN 8); calcium ion binding  note CALCINEURIN B-LIKE PROTEIN 8 (CBL8); FUNCTIONS IN: calcium ion binding; INVOLVED IN: calcium-mediated signaling; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), Recoverin (InterPro:IPR001125), Calcineurin B protein (InterPro:IPR015757), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: SOS3 (SALT OVERLY SENSITIVE 3); calcium ion binding / calcium-dependent protein serine/threonine phosphatase (TAIR:AT5G24270.1); Has 6422 Blast hits to 6417 proteins in 644 species: Archae - 0; Bacteria - 10; Metazoa - 3439; Fungi - 815; Plants - 1233; Viruses - 0; Other Eukaryotes - 925 (source: NCBI BLink).  protein_id AT1G64480.1p  transcript_id AT1G64480.1  protein_id AT1G64480.1p  transcript_id AT1G64480.1  
At1g64490	chr1:023952166	0.0	W/23952166-23952540	AT1G64490.1  CDS  gene_syn F1N19.6, F1N19_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42060.1); Has 43 Blast hits to 42 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G64490.1p  transcript_id AT1G64490.1  protein_id AT1G64490.1p  transcript_id AT1G64490.1  
At1g64500	chr1:023953270	0.0	W/23953270-23954376	AT1G64500.1  CDS  gene_syn F1N19.7, F1N19_7  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  go_component cellular_component|GO:0005575||ND  product glutaredoxin family protein  note glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: N-terminal protein myristoylation, cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin family protein (TAIR:AT4G10630.1); Has 415 Blast hits to 414 proteins in 89 species: Archae - 0; Bacteria - 34; Metazoa - 120; Fungi - 26; Plants - 208; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT1G64500.1p  transcript_id AT1G64500.1  protein_id AT1G64500.1p  transcript_id AT1G64500.1  
At1g64510	chr1:023955825	0.0	C/23955825-23956205,23954993-23955235	AT1G64510.1  CDS  gene_syn F1N19.8, F1N19_8  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein S6 family protein  note ribosomal protein S6 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: thylakoid, chloroplast thylakoid membrane, ribosome, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EF1B/ribosomal protein S6 (InterPro:IPR014717), Ribosomal protein S6 (InterPro:IPR000529); Has 978 Blast hits to 978 proteins in 282 species: Archae - 0; Bacteria - 578; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 375 (source: NCBI BLink).  protein_id AT1G64510.1p  transcript_id AT1G64510.1  protein_id AT1G64510.1p  transcript_id AT1G64510.1  
At1g64520	chr1:023956459	0.0	W/23956459-23956563,23956864-23956942,23957237-23957339,23957420-23957683,23957779-23957890,23957980-23958120	AT1G64520.1  CDS  gene_syn F1N19.9, F1N19_9, RPN12a, Regulatory Particle non-ATPase 12a  gene RPN12a  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component proteasome complex|GO:0000502|11826296|IDA  go_component nucleus|GO:0005634|11742986|TAS  go_component proteasome regulatory particle, lid subcomplex|GO:0008541||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_process response to heat|GO:0009408|17971041|IMP  go_process skotomorphogenesis|GO:0009647|11826296|IMP  go_process response to auxin stimulus|GO:0009733|11826296|IMP  go_process response to cytokinin stimulus|GO:0009735|11826296|IEP  go_process response to cytokinin stimulus|GO:0009735|11826296|IMP  go_process flower development|GO:0009908|11826296|IMP  go_process protein catabolic process|GO:0030163|11742986|TAS  go_process regulation of anthocyanin biosynthetic process|GO:0031540|11826296|IMP  go_process proteasomal ubiquitin-dependent protein catabolic process|GO:0043161|17971041|IMP  go_process proteasome assembly|GO:0043248|17971041|IMP  go_process leaf development|GO:0048366|11826296|IMP  go_process post-embryonic root development|GO:0048528|11826296|IMP  go_process cotyledon development|GO:0048825|11826296|IMP  go_process response to misfolded protein|GO:0051788|17971041|IMP  go_function peptidase activity|GO:0008233||ISS  product RPN12a (Regulatory Particle non-ATPase 12a); peptidase  note Regulatory Particle non-ATPase 12a (RPN12a); FUNCTIONS IN: peptidase activity; INVOLVED IN: in 14 processes; LOCATED IN: proteasome complex, nucleus, proteasome regulatory particle, lid subcomplex, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 26S proteasome non-ATPase regulatory subunit Rpn12 (InterPro:IPR006746), SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro:IPR005062); BEST Arabidopsis thaliana protein match is: RPN12b (Regulatory Particle Non-ATPase 12b); peptidase (TAIR:AT5G42040.1); Has 353 Blast hits to 353 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 167; Fungi - 84; Plants - 39; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT1G64520.1p  transcript_id AT1G64520.1  protein_id AT1G64520.1p  transcript_id AT1G64520.1  
At1g64530	chr1:023959820	0.0	W/23959820-23960033,23960197-23960756,23960848-23960895,23961024-23961936,23962012-23962332,23962427-23962896	AT1G64530.1  CDS  gene_syn F1N19.10, F1N19_10  go_function transcription factor activity|GO:0003700|11118137|ISS  product RWP-RK domain-containing protein  note RWP-RK domain-containing protein; FUNCTIONS IN: transcription factor activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: NLP7 (NIN LIKE PROTEIN 7); transcription factor (TAIR:AT4G24020.1); Has 351 Blast hits to 323 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 0; Plants - 289; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G64530.1p  transcript_id AT1G64530.1  protein_id AT1G64530.1p  transcript_id AT1G64530.1  
At1g64540	chr1:023966909	0.0	W/23966909-23967814,23967907-23968047,23968138-23968425	AT1G64540.1  CDS  gene_syn F1N19.11, F1N19_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G35995.2); Has 1011 Blast hits to 985 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1011; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G64540.1p  transcript_id AT1G64540.1  protein_id AT1G64540.1p  transcript_id AT1G64540.1  
At1g64550	chr1:023968850	0.0	W/23968850-23969053,23969244-23969459,23969549-23969738,23969853-23970061,23970176-23970328,23970556-23970684,23970765-23970866,23970952-23971098,23971222-23971284,23971364-23971410,23971567-23971626,23971745-23971827,23972009-23972103,23972363-23972449,23972650-23972737,23972884-23972969,23973063-23973125,23973244-23973369	AT1G64550.1  CDS  gene_syn ATGCN3, F1N19.28, F1N19_28  gene ATGCN3  function member of GCN subfamily  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  product ATGCN3; transporter  note ATGCN3; FUNCTIONS IN: transporter activity; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATGCN4; transporter (TAIR:AT3G54540.1); Has 271588 Blast hits to 184414 proteins in 2447 species: Archae - 5250; Bacteria - 196795; Metazoa - 6695; Fungi - 3392; Plants - 1974; Viruses - 48; Other Eukaryotes - 57434 (source: NCBI BLink).  protein_id AT1G64550.1p  transcript_id AT1G64550.1  protein_id AT1G64550.1p  transcript_id AT1G64550.1  
At1g64560	chr1:023973729	0.0	W/23973729-23974177	AT1G64560.1  pseudogenic_transcript  pseudo  gene_syn F1N19.29, F1N19_29  function pseudogene of S-adenosylmethionine-dependent methyltransferase/rRNA (adenine-N6,N6-)-dimethyltransferase/rRNA methyltransferase  
At1g64561	chr1:023974666	0.0	C/23974666-23974742,23974308-23974479	AT1G64561.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G64561.1p  transcript_id AT1G64561.1  protein_id AT1G64561.1p  transcript_id AT1G64561.1  
At1g64563	chr1:023975085	0.0	C/23975085-23976299	AT1G64563.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G64563.1  
At1g64570	chr1:023978868	0.0	W/23978868-23980050,23980140-23980485,23980561-23980645,23981040-23981096,23981459-23981518,23981597-23981797,23981924-23983357,23983572-23983925	AT1G64570.1  CDS  gene_syn F1N19.14, F1N19_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057); Has 1675 Blast hits to 1424 proteins in 225 species: Archae - 2; Bacteria - 192; Metazoa - 559; Fungi - 257; Plants - 67; Viruses - 46; Other Eukaryotes - 552 (source: NCBI BLink).  protein_id AT1G64570.1p  transcript_id AT1G64570.1  protein_id AT1G64570.1p  transcript_id AT1G64570.1  
At1g64572	chr1:023984011	0.0	W/23984011-23984795	AT1G64572.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G64572.1  
At1g64580	chr1:023987211	0.0	C/23987211-23988740,23985078-23986706	AT1G64580.1  CDS  gene_syn F1N19.15, F1N19_15  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G62910.1); Has 47501 Blast hits to 6201 proteins in 192 species: Archae - 7; Bacteria - 26; Metazoa - 1562; Fungi - 1139; Plants - 42520; Viruses - 0; Other Eukaryotes - 2247 (source: NCBI BLink).  protein_id AT1G64580.1p  transcript_id AT1G64580.1  protein_id AT1G64580.1p  transcript_id AT1G64580.1  
At1g64585	chr1:023989933	0.0	C/23989933-23990097	AT1G64585.1  CDS  gene_syn DEVIL 12, DVL12, ROTUNDIFOLIA LIKE 22, RTFL22  gene RTFL22  go_component cellular_component|GO:0005575||ND  go_process shoot development|GO:0048367|14871303|ISS  go_function molecular_function|GO:0003674||ND  product RTFL22 (ROTUNDIFOLIA LIKE 22)  note ROTUNDIFOLIA LIKE 22 (RTFL22); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: shoot development; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G64585.1p  transcript_id AT1G64585.1  protein_id AT1G64585.1p  transcript_id AT1G64585.1  
At1g64590	chr1:023993592	0.0	W/23993592-23993712,23993810-23994041,23994139-23994218,23994309-23994465,23994700-23994781,23994868-23995200	AT1G64590.1  CDS  gene_syn F1N19.16, F1N19_16  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT4G24050.1); Has 41324 Blast hits to 41293 proteins in 1869 species: Archae - 280; Bacteria - 23672; Metazoa - 3648; Fungi - 2422; Plants - 1075; Viruses - 0; Other Eukaryotes - 10227 (source: NCBI BLink).  protein_id AT1G64590.1p  transcript_id AT1G64590.1  protein_id AT1G64590.1p  transcript_id AT1G64590.1  
At1g64600	chr1:023995996	0.0	W/23995996-23996373,23996451-23996524,23996599-23996693,23996777-23996877,23996979-23997062,23997226-23997306,23997417-23997500,23997633-23997728,23997830-23997909,23998000-23998088,23998174-23998625	AT1G64600.1  CDS  gene_syn F1N19.17, F1N19_17  go_process translation|GO:0006412||IEA  go_function copper ion binding|GO:0005507||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  product copper ion binding / methyltransferase  note copper ion binding / methyltransferase; FUNCTIONS IN: methyltransferase activity, copper ion binding; INVOLVED IN: translation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein Rsm22, bacterial-type (InterPro:IPR015324), Cytochrome c oxidase assembly protein CtaG/Cox11 (InterPro:IPR007533); Has 507 Blast hits to 475 proteins in 172 species: Archae - 0; Bacteria - 86; Metazoa - 194; Fungi - 111; Plants - 18; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT1G64600.1p  transcript_id AT1G64600.1  protein_id AT1G64600.1p  transcript_id AT1G64600.1  
At1g64610	chr1:024000296	0.0	C/24000296-24001297,24000121-24000211,23999865-24000022,23999748-23999799,23999465-23999644,23998920-23999380	AT1G64610.1  CDS  gene_syn F1N19.18, F1N19_18  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_process signal transduction|GO:0007165||ISS  go_function signal transducer activity|GO:0004871||ISS  product WD-40 repeat family protein  note WD-40 repeat family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: signal transduction; LOCATED IN: heterotrimeric G-protein complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein (TAIR:AT5G42010.1); Has 22665 Blast hits to 14096 proteins in 500 species: Archae - 50; Bacteria - 3402; Metazoa - 10074; Fungi - 4344; Plants - 1884; Viruses - 0; Other Eukaryotes - 2911 (source: NCBI BLink).  protein_id AT1G64610.1p  transcript_id AT1G64610.1  protein_id AT1G64610.1p  transcript_id AT1G64610.1  
At1g64610	chr1:024000296	0.0	C/24000296-24001297,24000121-24000211,23999865-24000022,23999748-23999799,23999465-23999644,23998920-23999380	AT1G64610.2  CDS  gene_syn F1N19.18, F1N19_18  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_process signal transduction|GO:0007165||ISS  go_function signal transducer activity|GO:0004871||ISS  product WD-40 repeat family protein  note WD-40 repeat family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: signal transduction; LOCATED IN: heterotrimeric G-protein complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein (TAIR:AT5G42010.1); Has 22665 Blast hits to 14096 proteins in 500 species: Archae - 50; Bacteria - 3402; Metazoa - 10074; Fungi - 4344; Plants - 1884; Viruses - 0; Other Eukaryotes - 2911 (source: NCBI BLink).  protein_id AT1G64610.2p  transcript_id AT1G64610.2  protein_id AT1G64610.2p  transcript_id AT1G64610.2  
At1g64618	chr1:024005900	0.0	W/24005900-24006393	AT1G64618.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G64618.1  
At1g64620	chr1:024007288	0.0	W/24007288-24007311,24007426-24008460	AT1G64620.1  CDS  gene_syn F1N19.19, F1N19_19  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product Dof-type zinc finger domain-containing protein  note Dof-type zinc finger domain-containing protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT4G24060.1); Has 1445 Blast hits to 723 proteins in 70 species: Archae - 0; Bacteria - 10; Metazoa - 170; Fungi - 17; Plants - 619; Viruses - 0; Other Eukaryotes - 629 (source: NCBI BLink).  protein_id AT1G64620.1p  transcript_id AT1G64620.1  protein_id AT1G64620.1p  transcript_id AT1G64620.1  
At1g64625	chr1:024016878	0.0	W/24016878-24016972,24017159-24017248,24017342-24017405,24017546-24017587,24017647-24017736,24017813-24018589,24018683-24018784,24018858-24019181	AT1G64625.1  CDS  go_function transcription factor activity|GO:0003700|12679534|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; BEST Arabidopsis thaliana protein match is: LHW (LONESOME HIGHWAY); protein homodimerization/ transcription activator/ transcription factor (TAIR:AT2G27230.2); Has 131 Blast hits to 95 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G64625.1p  transcript_id AT1G64625.1  protein_id AT1G64625.1p  transcript_id AT1G64625.1  
At1g64625	chr1:024016878	0.0	W/24016878-24016972,24017159-24017248,24017342-24017405,24017546-24017587,24017677-24017736,24017813-24018589,24018683-24018784,24018858-24019181	AT1G64625.2  CDS  go_function transcription factor activity|GO:0003700|12679534|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; BEST Arabidopsis thaliana protein match is: LHW (LONESOME HIGHWAY); protein homodimerization/ transcription activator/ transcription factor (TAIR:AT2G27230.2); Has 165 Blast hits to 127 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 165; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G64625.2p  transcript_id AT1G64625.2  protein_id AT1G64625.2p  transcript_id AT1G64625.2  
At1g64628	chr1:024019624	0.0	W/24019624-24019839	AT1G64628.1  CDS  gene_syn CPuORF57, Conserved peptide upstream open reading frame 57  gene CPuORF57  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF57 represents a conserved upstream opening reading frame relative to major ORF AT1G64630.1  product CPuORF57 (Conserved peptide upstream open reading frame 57)  note Conserved peptide upstream open reading frame 57 (CPuORF57); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G64628.1p  transcript_id AT1G64628.1  protein_id AT1G64628.1p  transcript_id AT1G64628.1  
At1g64630	chr1:024019920	0.0	W/24019920-24019970,24020118-24020155,24020272-24020499,24020602-24020822,24020909-24021066,24021146-24021545,24021636-24022114	AT1G64630.1  CDS  gene_syn ATWNK10, F1N19.20, F1N19_20, WITH NO LYSINE KINASE 10, WNK10  gene WNK10  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function kinase activity|GO:0016301||ISS  product WNK10 (WITH NO LYSINE KINASE 10); kinase/ transcription factor  note WITH NO LYSINE KINASE 10 (WNK10); FUNCTIONS IN: transcription factor activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: WNK8 (WITH NO LYSINE (K) KINASE 8); kinase/ protein kinase (TAIR:AT5G41990.1); Has 77185 Blast hits to 76497 proteins in 1905 species: Archae - 28; Bacteria - 5972; Metazoa - 32664; Fungi - 6701; Plants - 16849; Viruses - 382; Other Eukaryotes - 14589 (source: NCBI BLink).  protein_id AT1G64630.1p  transcript_id AT1G64630.1  protein_id AT1G64630.1p  transcript_id AT1G64630.1  
At1g64640	chr1:024022956	0.0	C/24022956-24023151,24022482-24022861	AT1G64640.1  CDS  gene_syn F1N19.21, F1N19_21  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function copper ion binding|GO:0005507||ISS  product plastocyanin-like domain-containing protein  note plastocyanin-like domain-containing protein; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: plastocyanin-like domain-containing protein (TAIR:AT3G20570.1); Has 733 Blast hits to 725 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 733; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G64640.1p  transcript_id AT1G64640.1  protein_id AT1G64640.1p  transcript_id AT1G64640.1  
At1g64650	chr1:024025876	0.0	C/24025876-24026048,24025350-24025789,24024990-24025255,24024682-24024897,24024170-24024278,24023805-24023866	AT1G64650.2  CDS  gene_syn F1N19.22, F1N19_22  go_component plasma membrane|GO:0005886|17151019|IDA  product unknown protein  note LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF791 (InterPro:IPR008509), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27720.1); Has 548 Blast hits to 545 proteins in 182 species: Archae - 5; Bacteria - 298; Metazoa - 76; Fungi - 38; Plants - 85; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT1G64650.2p  transcript_id AT1G64650.2  protein_id AT1G64650.2p  transcript_id AT1G64650.2  
At1g64650	chr1:024026186	0.0	C/24026186-24026336,24025876-24026020,24025350-24025789,24024990-24025255,24024682-24024897,24024170-24024278,24023805-24023866	AT1G64650.1  CDS  gene_syn F1N19.22, F1N19_22  go_component plasma membrane|GO:0005886|17151019|IDA  product unknown protein  note LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF791 (InterPro:IPR008509), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27720.1); Has 565 Blast hits to 562 proteins in 197 species: Archae - 7; Bacteria - 312; Metazoa - 76; Fungi - 39; Plants - 85; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT1G64650.1p  transcript_id AT1G64650.1  protein_id AT1G64650.1p  transcript_id AT1G64650.1  
At1g64660	chr1:024028977	0.0	W/24028977-24029349,24029485-24029886,24029987-24030537	AT1G64660.1  CDS  gene_syn ARABIDOPSIS THALIANA METHIONINE GAMMA-LYASE, ATMGL, F1N19.23, F1N19_23  gene ATMGL  function Encodes a functional methionine gamma-lyase, a cytosolic enzyme catalyzes the degradation of methionine into methanethiol, alpha-ketobutyrate and ammonia. The catabolism of excess methionine is important to methionine homeostasis.  go_component cytosol|GO:0005829|17030798|IDA  go_process amino acid metabolic process|GO:0006520||ISS  go_process methionine catabolic process via 2-oxobutanoate|GO:0019458|17030798|TAS  go_function catalytic activity|GO:0003824||ISS  go_function methionine gamma-lyase activity|GO:0018826|17030798|IDA  product ATMGL (ARABIDOPSIS THALIANA METHIONINE GAMMA-LYASE); catalytic/ methionine gamma-lyase  note ARABIDOPSIS THALIANA METHIONINE GAMMA-LYASE (ATMGL); FUNCTIONS IN: methionine gamma-lyase activity, catalytic activity; INVOLVED IN: amino acid metabolic process, methionine catabolic process via 2-oxobutanoate; LOCATED IN: cytosol; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Cys/Met metabolism, pyridoxal phosphate-dependent enzyme (InterPro:IPR000277), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: MTO1 (METHIONINE OVERACCUMULATION 1); cystathionine gamma-synthase (TAIR:AT3G01120.1); Has 13284 Blast hits to 13281 proteins in 1319 species: Archae - 128; Bacteria - 6105; Metazoa - 184; Fungi - 496; Plants - 184; Viruses - 0; Other Eukaryotes - 6187 (source: NCBI BLink).  protein_id AT1G64660.1p  transcript_id AT1G64660.1  protein_id AT1G64660.1p  transcript_id AT1G64660.1  
At1g64670	chr1:024032943	0.0	C/24032943-24033474,24031889-24032220,24031599-24031798,24030990-24031335	AT1G64670.1  CDS  gene_syn BDG1, BODYGUARD1, F1N19.24, F1N19_24  gene BDG1  function Encodes a epidermally expressed extracellular protein that likely functions as an alpha-beta hydrolase and is required for normal cuticle formation. Homozygous mutant plants are dwarfed and have abnormal leaves, collapsed cells, reduced numbers of trichomes. The specific role of BDG is unclear: it may function in cutin biosynthesis or as a cross-linking enzyme in the cell wall itself.  go_component middle lamella-containing extracellular matrix|GO:0048196|16415209|IDA  go_function hydrolase activity|GO:0016787||ISS  product BDG1 (BODYGUARD1); hydrolase  note BODYGUARD1 (BDG1); FUNCTIONS IN: hydrolase activity; LOCATED IN: middle lamella-containing extracellular matrix; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT5G41900.1); Has 5523 Blast hits to 5522 proteins in 840 species: Archae - 16; Bacteria - 2979; Metazoa - 284; Fungi - 161; Plants - 155; Viruses - 2; Other Eukaryotes - 1926 (source: NCBI BLink).  protein_id AT1G64670.1p  transcript_id AT1G64670.1  protein_id AT1G64670.1p  transcript_id AT1G64670.1  
At1g64680	chr1:024036071	0.0	W/24036071-24036570,24036654-24036760,24036841-24036936,24037013-24037062	AT1G64680.1  CDS  gene_syn F1N19.25, F1N19_25  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03055.1); Has 64 Blast hits to 64 proteins in 14 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G64680.1p  transcript_id AT1G64680.1  protein_id AT1G64680.1p  transcript_id AT1G64680.1  
At1g64690	chr1:024038069	0.0	W/24038069-24038890	AT1G64690.1  CDS  gene_syn F13O11.1, F13O11_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11590.1); Has 7837 Blast hits to 4635 proteins in 354 species: Archae - 30; Bacteria - 245; Metazoa - 3679; Fungi - 495; Plants - 217; Viruses - 48; Other Eukaryotes - 3123 (source: NCBI BLink).  protein_id AT1G64690.1p  transcript_id AT1G64690.1  protein_id AT1G64690.1p  transcript_id AT1G64690.1  
At1g64700	chr1:024039931	0.0	C/24039931-24040542	AT1G64700.1  CDS  gene_syn F13O11.2, F13O11_2  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61920.1); Has 12 Blast hits to 12 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G64700.1p  transcript_id AT1G64700.1  protein_id AT1G64700.1p  transcript_id AT1G64700.1  
At1g64710	chr1:024044638	0.0	W/24044638-24044719,24044801-24044937,24045019-24045068,24045141-24045472,24045559-24045641,24045723-24045798,24045883-24046313	AT1G64710.1  CDS  gene_syn F13O11.3, F13O11_3  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product alcohol dehydrogenase, putative  note alcohol dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, binding, zinc ion binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: alcohol dehydrogenase, putative (TAIR:AT1G32780.1); Has 20969 Blast hits to 20953 proteins in 1940 species: Archae - 357; Bacteria - 11559; Metazoa - 1189; Fungi - 1548; Plants - 3011; Viruses - 3; Other Eukaryotes - 3302 (source: NCBI BLink).  protein_id AT1G64710.1p  transcript_id AT1G64710.1  protein_id AT1G64710.1p  transcript_id AT1G64710.1  
At1g64710	chr1:024044836	0.0	W/24044836-24044937,24045019-24045068,24045141-24045472,24045559-24045641,24045723-24045798,24045883-24046313	AT1G64710.2  CDS  gene_syn F13O11.3, F13O11_3  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product alcohol dehydrogenase, putative  note alcohol dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, binding, zinc ion binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: alcohol dehydrogenase, putative (TAIR:AT1G32780.1); Has 20259 Blast hits to 20249 proteins in 1935 species: Archae - 345; Bacteria - 11141; Metazoa - 1152; Fungi - 1514; Plants - 3007; Viruses - 3; Other Eukaryotes - 3097 (source: NCBI BLink).  protein_id AT1G64710.2p  transcript_id AT1G64710.2  protein_id AT1G64710.2p  transcript_id AT1G64710.2  
At1g64720	chr1:024048302	0.0	C/24048302-24048537,24048040-24048196,24047787-24047963,24047621-24047704,24047381-24047462,24046887-24047308	AT1G64720.1  CDS  gene_syn CP5, F13O11.4, F13O11_4  gene CP5  function membrane related protein CP5  go_component vacuole|GO:0005773|14760709|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product CP5  note CP5; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54170.1); Has 244 Blast hits to 243 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G64720.1p  transcript_id AT1G64720.1  protein_id AT1G64720.1p  transcript_id AT1G64720.1  
At1g64730	chr1:024048864	0.0	W/24048864-24049160	AT1G64730.1  pseudogenic_transcript  pseudo  gene_syn F13O11.32  note pseudogene, putative NADH dehydrogenase subunit F, blastp match of 68% identity and 5.3e-08 P-value to GP|3366920|gb|AAC68594.1||AF064655 NADH dehydrogenase subunit F {Stanleya pinnata}  
At1g64740	chr1:024050114	0.0	W/24050114-24050226,24050387-24050601,24051114-24051313,24051386-24051894,24051981-24052296	AT1G64740.1  CDS  gene_syn ALPHA-1 TUBULIN, F13O11.5, F13O11_5, TUA1  gene TUA1  function alpha-tubulin expressed primarily in stamens and mature pollen  go_component plasma membrane|GO:0005886|17644812|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component microtubule cytoskeleton|GO:0015630||ISS  go_process microtubule-based process|GO:0007017|1498610|ISS  go_function structural constituent of cytoskeleton|GO:0005200||ISS  product TUA1 (ALPHA-1 TUBULIN); structural constituent of cytoskeleton  note ALPHA-1 TUBULIN (TUA1); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: microtubule-based process; LOCATED IN: cytosol, microtubule cytoskeleton, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alpha tubulin (InterPro:IPR002452), Tubulin, conserved site (InterPro:IPR017975), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase (InterPro:IPR003008), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: TUA5; structural constituent of cytoskeleton (TAIR:AT5G19780.1); Has 16450 Blast hits to 16376 proteins in 3501 species: Archae - 3; Bacteria - 27; Metazoa - 3559; Fungi - 9028; Plants - 1010; Viruses - 0; Other Eukaryotes - 2823 (source: NCBI BLink).  protein_id AT1G64740.1p  transcript_id AT1G64740.1  protein_id AT1G64740.1p  transcript_id AT1G64740.1  
At1g64750	chr1:024053619	0.0	C/24053619-24053712,24052787-24052917	AT1G64750.1  CDS  gene_syn ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I), ATDSS1(I), F13O11.6, F13O11_6  gene ATDSS1(I)  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))  note ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I) (ATDSS1(I)); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DSS1/SEM1 (InterPro:IPR007834); BEST Arabidopsis thaliana protein match is: ATDSS1(V) (Arabidopsis dss1 homolog on chromosome V) (TAIR:AT5G45010.1); Has 235 Blast hits to 235 proteins in 97 species: Archae - 0; Bacteria - 0; Metazoa - 117; Fungi - 59; Plants - 42; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G64750.1p  transcript_id AT1G64750.1  protein_id AT1G64750.1p  transcript_id AT1G64750.1  
At1g64750	chr1:024053619	0.0	C/24053619-24053712,24052787-24052917	AT1G64750.2  CDS  gene_syn ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I), ATDSS1(I), F13O11.6, F13O11_6  gene ATDSS1(I)  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))  note ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I) (ATDSS1(I)); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DSS1/SEM1 (InterPro:IPR007834); BEST Arabidopsis thaliana protein match is: ATDSS1(V) (Arabidopsis dss1 homolog on chromosome V) (TAIR:AT5G45010.1); Has 235 Blast hits to 235 proteins in 97 species: Archae - 0; Bacteria - 0; Metazoa - 117; Fungi - 59; Plants - 42; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G64750.2p  transcript_id AT1G64750.2  protein_id AT1G64750.2p  transcript_id AT1G64750.2  
At1g64760	chr1:024055860	0.0	C/24055860-24056194,24054913-24055412,24054220-24054830	AT1G64760.1  CDS  gene_syn F13O11.7, F13O11_7  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT2G19440.1); Has 1676 Blast hits to 1621 proteins in 125 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 26; Plants - 1637; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G64760.1p  transcript_id AT1G64760.1  protein_id AT1G64760.1p  transcript_id AT1G64760.1  
At1g64760	chr1:024055860	0.0	C/24055860-24056194,24054913-24055412,24054220-24054830	AT1G64760.2  CDS  gene_syn F13O11.7, F13O11_7  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT2G19440.1); Has 1676 Blast hits to 1621 proteins in 125 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 26; Plants - 1637; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G64760.2p  transcript_id AT1G64760.2  protein_id AT1G64760.2p  transcript_id AT1G64760.2  
At1g64770	chr1:024057549	0.0	W/24057549-24057962,24058038-24058472,24059218-24059415	AT1G64770.1  CDS  gene_syn F13O11.8, F13O11_8, NDF2, NDH-DEPENDENT CYCLIC ELECTRON FLOW 1  gene NDF2  function encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_function catalytic activity|GO:0003824||IEA  go_function carbohydrate binding|GO:0030246||IEA  go_component chloroplast thylakoid membrane|GO:0009535|18785996|IDA  go_component NAD(P)H dehydrogenase complex (plastoquinone)|GO:0010598|18785996|IDA  go_component NAD(P)H dehydrogenase complex (plastoquinone)|GO:0010598|18785996|IMP  go_process photosynthetic electron transport in photosystem I|GO:0009773|18785996|IMP  product NDF2 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1); carbohydrate binding / catalytic  note NDH-DEPENDENT CYCLIC ELECTRON FLOW 1 (NDF2); FUNCTIONS IN: carbohydrate binding, catalytic activity; INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013); BEST Arabidopsis thaliana protein match is: carbohydrate binding / catalytic (TAIR:AT1G55370.2); Has 46 Blast hits to 45 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 2; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G64770.1p  transcript_id AT1G64770.1  protein_id AT1G64770.1p  transcript_id AT1G64770.1  
At1g64770	chr1:024057549	0.0	W/24057549-24057962,24058038-24058565	AT1G64770.2  CDS  gene_syn F13O11.8, F13O11_8, NDF2, NDH-DEPENDENT CYCLIC ELECTRON FLOW 1  gene NDF2  function encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|18785996|IDA  go_component NAD(P)H dehydrogenase complex (plastoquinone)|GO:0010598|18785996|IDA  go_component NAD(P)H dehydrogenase complex (plastoquinone)|GO:0010598|18785996|IMP  go_process photosynthetic electron transport in photosystem I|GO:0009773|18785996|IMP  product NDF2 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1)  note NDH-DEPENDENT CYCLIC ELECTRON FLOW 1 (NDF2); INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: carbohydrate binding / catalytic (TAIR:AT1G55370.2); Has 45 Blast hits to 44 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 2; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G64770.2p  transcript_id AT1G64770.2  protein_id AT1G64770.2p  transcript_id AT1G64770.2  
At1g64780	chr1:024061021	0.0	C/24061021-24062565	AT1G64780.1  CDS  gene_syn AMMONIUM TRANSPORTER 1;2, AMT1;2, ATAMT1;2  gene ATAMT1;2  function encodes an ammonium transporter protein believed to act as a high affinity transporter. It is expressed in the root, primarily in endodermal and cortical cells, and contributes to ammonium uptake in the root.  go_component plasma membrane|GO:0005886|17693533|IDA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_process response to nematode|GO:0009624|16478044|IEP  go_process ammonium transport|GO:0015696|17693533|IMP  go_process methylammonium transport|GO:0015843|17693533|IMP  go_function ammonium transmembrane transporter activity|GO:0008519||ISS  product ATAMT1;2 (AMMONIUM TRANSPORTER 1;2); ammonium transmembrane transporter  note AMMONIUM TRANSPORTER 1;2 (ATAMT1;2); FUNCTIONS IN: ammonium transmembrane transporter activity; INVOLVED IN: methylammonium transport, ammonium transport, transport, response to nematode; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ammonium transporter (InterPro:IPR001905), Ammonium transporter, conserved site (InterPro:IPR018047), Rh-like protein/ammonium transporter (InterPro:IPR010256); BEST Arabidopsis thaliana protein match is: AMT1;1 (AMMONIUM TRANSPORTER 1;1); ammonium transmembrane transporter (TAIR:AT4G13510.1); Has 9037 Blast hits to 9035 proteins in 1167 species: Archae - 146; Bacteria - 2592; Metazoa - 476; Fungi - 298; Plants - 290; Viruses - 0; Other Eukaryotes - 5235 (source: NCBI BLink).  protein_id AT1G64780.1p  transcript_id AT1G64780.1  protein_id AT1G64780.1p  transcript_id AT1G64780.1  
At1g64790	chr1:024081794	0.0	C/24081794-24081908,24081229-24081605,24081013-24081144,24080507-24080888,24080166-24080312,24079788-24079972,24079580-24079706,24079402-24079475,24079195-24079271,24079078-24079114,24078835-24079001,24078436-24078622,24078258-24078335,24078047-24078166,24077898-24077957,24077611-24077700,24077415-24077505,24077156-24077325,24076673-24076966,24076477-24076593,24076209-24076310,24075981-24076130,24075617-24075781,24075369-24075545,24075052-24075174,24074873-24074953,24074673-24074789,24074368-24074540,24073830-24073907,24073603-24073750,24073130-24073252,24072966-24073022,24072777-24072887,24072503-24072694,24072252-24072425,24071732-24071842,24071582-24071651,24071416-24071494,24071068-24071170,24070612-24070782,24070404-24070526,24070214-24070327,24069714-24069820,24069584-24069635,24069397-24069503,24069252-24069311,24069043-24069157,24068848-24068958,24068635-24068772,24068444-24068566,24068248-24068319,24067884-24067996,24067453-24067611,24066933-24067029,24066656-24066838,24066229-24066423,24065979-24066158,24065760-24065892,24065561-24065639,24065232-24065271	AT1G64790.1  CDS  gene_syn F13O11.35, F13O11_35  go_component membrane|GO:0016020|17432890|IDA  go_function binding|GO:0005488||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  product binding  note binding; FUNCTIONS IN: binding; LOCATED IN: cytosol, nucleus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); Has 2692 Blast hits to 1863 proteins in 219 species: Archae - 40; Bacteria - 175; Metazoa - 1167; Fungi - 728; Plants - 256; Viruses - 13; Other Eukaryotes - 313 (source: NCBI BLink).  protein_id AT1G64790.1p  transcript_id AT1G64790.1  protein_id AT1G64790.1p  transcript_id AT1G64790.1  
At1g64800	chr1:024085086	0.0	W/24085086-24085433	AT1G64800.1  CDS  gene_syn F13O11.33, F13O11_33  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process glutamate catabolic process to succinate|GO:0019549||IEA  go_function DNA binding|GO:0003677||IEA  go_function transcription factor activity|GO:0003700||IEA  go_component cellular_component|GO:0005575||ND  product DNA binding / transcription factor  note DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, glutamate catabolic process to succinate; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, E expanded cotyledon stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Homeobox protein, antennapedia type, conserved site (InterPro:IPR001827); Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G64800.1p  transcript_id AT1G64800.1  protein_id AT1G64800.1p  transcript_id AT1G64800.1  
At1g64810	chr1:024086810	0.0	W/24086810-24086983,24087068-24088276	AT1G64810.2  CDS  gene_syn ACCUMULATION OF PHOTOSYSTEM ONE 1, APO1, F13O11.11, F13O11_11  gene APO1  function chloroplast APO1  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product APO1 (ACCUMULATION OF PHOTOSYSTEM ONE 1)  note ACCUMULATION OF PHOTOSYSTEM ONE 1 (APO1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF794, plant (InterPro:IPR008512); BEST Arabidopsis thaliana protein match is: APO2 (ACCUMULATION OF PHOTOSYSTEM ONE 2) (TAIR:AT5G57930.2); Has 75 Blast hits to 62 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G64810.2p  transcript_id AT1G64810.2  protein_id AT1G64810.2p  transcript_id AT1G64810.2  
At1g64810	chr1:024086882	0.0	W/24086882-24086983,24087068-24088276	AT1G64810.1  CDS  gene_syn ACCUMULATION OF PHOTOSYSTEM ONE 1, APO1, F13O11.11, F13O11_11  gene APO1  function chloroplast APO1  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product APO1 (ACCUMULATION OF PHOTOSYSTEM ONE 1)  note ACCUMULATION OF PHOTOSYSTEM ONE 1 (APO1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF794, plant (InterPro:IPR008512); BEST Arabidopsis thaliana protein match is: APO2 (ACCUMULATION OF PHOTOSYSTEM ONE 2) (TAIR:AT5G57930.2); Has 75 Blast hits to 62 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G64810.1p  transcript_id AT1G64810.1  protein_id AT1G64810.1p  transcript_id AT1G64810.1  
At1g64820	chr1:024088605	0.0	W/24088605-24089401,24089535-24089621,24089700-24089756,24089846-24090084,24090157-24090362,24090436-24090558	AT1G64820.1  CDS  gene_syn F13O11.12, F13O11_12  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020|11152613|ISS  go_component membrane|GO:0016020||ISS  go_process multidrug transport|GO:0006855||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G66780.1); Has 5161 Blast hits to 5085 proteins in 1054 species: Archae - 111; Bacteria - 3194; Metazoa - 126; Fungi - 208; Plants - 697; Viruses - 0; Other Eukaryotes - 825 (source: NCBI BLink).  protein_id AT1G64820.1p  transcript_id AT1G64820.1  protein_id AT1G64820.1p  transcript_id AT1G64820.1  
At1g64830	chr1:024091271	0.0	C/24091271-24092566	AT1G64830.1  CDS  gene_syn F13O11.13, F13O11_13  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: CDR1 (CONSTITUTIVE DISEASE RESISTANCE 1); aspartic-type endopeptidase (TAIR:AT5G33340.1); Has 2388 Blast hits to 2370 proteins in 249 species: Archae - 0; Bacteria - 2; Metazoa - 559; Fungi - 535; Plants - 1117; Viruses - 0; Other Eukaryotes - 175 (source: NCBI BLink).  protein_id AT1G64830.1p  transcript_id AT1G64830.1  protein_id AT1G64830.1p  transcript_id AT1G64830.1  
At1g64840	chr1:024094010	0.0	W/24094010-24095164	AT1G64840.1  CDS  gene_syn F13O11.14, F13O11_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G24250.2); Has 94 Blast hits to 92 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G64840.1p  transcript_id AT1G64840.1  protein_id AT1G64840.1p  transcript_id AT1G64840.1  
At1g64850	chr1:024097547	0.0	C/24097547-24097574,24097288-24097414,24097109-24097181,24096548-24096808	AT1G64850.1  CDS  gene_syn F13O11.15, F13O11_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37445.1); Has 40 Blast hits to 40 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G64850.1p  transcript_id AT1G64850.1  protein_id AT1G64850.1p  transcript_id AT1G64850.1  
At1g64860	chr1:024098497	0.0	W/24098497-24099167,24099252-24099450,24099537-24099629,24099716-24099844,24099919-24099972,24100066-24100143,24100265-24100327,24100444-24100556,24100638-24100746	AT1G64860.1  CDS  gene_syn F13O11.16, F13O11_16, RNA POLYMERASE SIGMA SUBUNIT 1, RNA POLYMERASE SIGMA SUBUNIT 2, RPOD1, SIG1, SIG2, SIGA, SIGB, SIGMA FACTOR A  gene SIGA  function Subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme  go_component chloroplast|GO:0009507|10555304|IDA  go_process transcription initiation|GO:0006352|9280303|TAS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  go_function sigma factor activity|GO:0016987|9280303|ISS  product SIGA (SIGMA FACTOR A); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor  note SIGMA FACTOR A (SIGA); FUNCTIONS IN: DNA-directed RNA polymerase activity, transcription factor activity, sigma factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, transcription initiation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor, region 2 (InterPro:IPR013325), Winged helix repressor DNA-binding (InterPro:IPR011991), RNA polymerase sigma-70 region 3 (InterPro:IPR007624), RNA polymerase sigma-70 (InterPro:IPR014284), RNA polymerase sigma factor, regions 3 and 4 (InterPro:IPR013324), RNA polymerase sigma-70 factor (InterPro:IPR000943), RNA polymerase sigma-70 region 2 (InterPro:IPR007627), RNA polymerase sigma-70 region 4 (InterPro:IPR007630); BEST Arabidopsis thaliana protein match is: SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor (TAIR:AT1G08540.1); Has 15867 Blast hits to 15863 proteins in 1572 species: Archae - 0; Bacteria - 9455; Metazoa - 0; Fungi - 0; Plants - 150; Viruses - 12; Other Eukaryotes - 6250 (source: NCBI BLink).  protein_id AT1G64860.1p  transcript_id AT1G64860.1  protein_id AT1G64860.1p  transcript_id AT1G64860.1  
At1g64870	chr1:024102917	0.0	W/24102917-24103831	AT1G64870.1  CDS  gene_syn F13O11.17, F13O11_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G45200.1); Has 48 Blast hits to 41 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G64870.1p  transcript_id AT1G64870.1  protein_id AT1G64870.1p  transcript_id AT1G64870.1  
At1g64880	chr1:024105713	0.0	W/24105713-24106259,24106345-24106865,24107337-24107387,24107465-24107572,24108211-24108306,24108394-24108492,24108577-24108636,24108715-24108780	AT1G64880.1  CDS  gene_syn F13O11.18, F13O11_18  go_process translation|GO:0006412||IEA  go_function RNA binding|GO:0003723||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component intracellular|GO:0005622||ISS  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein S5 family protein  note ribosomal protein S5 family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation; LOCATED IN: ribosome, Golgi apparatus, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding-like (InterPro:IPR014720), Ribosomal protein S5, C-terminal (InterPro:IPR005324), Ribosomal protein S5 (InterPro:IPR000851), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721), Ribosomal protein S5, N-terminal (InterPro:IPR013810); BEST Arabidopsis thaliana protein match is: ribosomal protein S5 family protein (TAIR:AT2G33800.1); Has 10105 Blast hits to 8747 proteins in 1649 species: Archae - 225; Bacteria - 3046; Metazoa - 1648; Fungi - 368; Plants - 134; Viruses - 59; Other Eukaryotes - 4625 (source: NCBI BLink).  protein_id AT1G64880.1p  transcript_id AT1G64880.1  protein_id AT1G64880.1p  transcript_id AT1G64880.1  
At1g64890	chr1:024109752	0.0	W/24109752-24110031,24110117-24111165	AT1G64890.1  CDS  gene_syn F13O11.19, F13O11_19  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product integral membrane transporter family protein  note integral membrane transporter family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily, general substrate transporter (InterPro:IPR016196), Biopterin transport-related protein BT1 (InterPro:IPR004324); BEST Arabidopsis thaliana protein match is: integral membrane transporter family protein (TAIR:AT1G04570.1); Has 610 Blast hits to 607 proteins in 194 species: Archae - 12; Bacteria - 254; Metazoa - 40; Fungi - 1; Plants - 126; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).  protein_id AT1G64890.1p  transcript_id AT1G64890.1  protein_id AT1G64890.1p  transcript_id AT1G64890.1  
At1g64900	chr1:024113283	0.0	W/24113283-24114803	AT1G64900.1  CDS  gene_syn CYP89, CYP89A2, CYTOCHROME P450 89A2, F13O11.20, F13O11_20  gene CYP89A2  function Encodes cytochrome P450 (CYP89A2).  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP89A2 (CYTOCHROME P450 89A2); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYTOCHROME P450 89A2 (CYP89A2); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, putative (TAIR:AT2G12190.1); Has 23548 Blast hits to 23448 proteins in 1257 species: Archae - 21; Bacteria - 2180; Metazoa - 10301; Fungi - 4452; Plants - 5583; Viruses - 3; Other Eukaryotes - 1008 (source: NCBI BLink).  protein_id AT1G64900.1p  transcript_id AT1G64900.1  protein_id AT1G64900.1p  transcript_id AT1G64900.1  
At1g64910	chr1:024115324	0.0	C/24115324-24116667	AT1G64910.1  CDS  gene_syn F13O11.21, F13O11_21  go_process metabolic process|GO:0008152||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyltransferase family protein  note glycosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: glycosyltransferase family protein (TAIR:AT5G53990.1); Has 3424 Blast hits to 3404 proteins in 207 species: Archae - 0; Bacteria - 37; Metazoa - 816; Fungi - 6; Plants - 2554; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G64910.1p  transcript_id AT1G64910.1  protein_id AT1G64910.1p  transcript_id AT1G64910.1  
At1g64920	chr1:024117440	0.0	C/24117440-24118798	AT1G64920.1  CDS  gene_syn F13O11.22, F13O11_22  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyltransferase family protein  note glycosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: glycosyltransferase family protein (TAIR:AT1G64910.1); Has 2645 Blast hits to 2626 proteins in 161 species: Archae - 0; Bacteria - 12; Metazoa - 86; Fungi - 6; Plants - 2539; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G64920.1p  transcript_id AT1G64920.1  protein_id AT1G64920.1p  transcript_id AT1G64920.1  
At1g64930	chr1:024120926	0.0	W/24120926-24122461	AT1G64930.1  CDS  gene_syn CYP89A7, F13O11.23, F13O11_23  gene CYP89A7  function member of CYP89A  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP89A7; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP89A7; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, putative (TAIR:AT2G12190.1); Has 23662 Blast hits to 23567 proteins in 1258 species: Archae - 21; Bacteria - 2242; Metazoa - 10280; Fungi - 4455; Plants - 5593; Viruses - 3; Other Eukaryotes - 1068 (source: NCBI BLink).  protein_id AT1G64930.1p  transcript_id AT1G64930.1  protein_id AT1G64930.1p  transcript_id AT1G64930.1  
At1g64940	chr1:024123789	0.0	W/24123789-24125324	AT1G64940.1  CDS  gene_syn CYP89A6, F13O11.24, F13O11_24  gene CYP89A6  function member of CYP89A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP89A6; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP89A6; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP89A5; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G64950.1); Has 23839 Blast hits to 23745 proteins in 1275 species: Archae - 21; Bacteria - 2411; Metazoa - 10298; Fungi - 4420; Plants - 5574; Viruses - 3; Other Eukaryotes - 1112 (source: NCBI BLink).  protein_id AT1G64940.1p  transcript_id AT1G64940.1  protein_id AT1G64940.1p  transcript_id AT1G64940.1  
At1g64950	chr1:024127587	0.0	W/24127587-24129119	AT1G64950.1  CDS  gene_syn CYP89A5, F13O11.25, F13O11_25  gene CYP89A5  function member of CYP89A  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_function oxygen binding|GO:0019825||ISS  product CYP89A5; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP89A5; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, putative (TAIR:AT2G12190.1); Has 23955 Blast hits to 23873 proteins in 1272 species: Archae - 32; Bacteria - 2370; Metazoa - 10327; Fungi - 4509; Plants - 5587; Viruses - 3; Other Eukaryotes - 1127 (source: NCBI BLink).  protein_id AT1G64950.1p  transcript_id AT1G64950.1  protein_id AT1G64950.1p  transcript_id AT1G64950.1  
At1g64960	chr1:024129918	0.0	W/24129918-24130979,24131100-24131564,24131662-24132606,24132778-24132949,24133082-24134049	AT1G64960.1  CDS  gene_syn F13O11.26, F13O11_26  go_function binding|GO:0005488||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  product binding  note binding; FUNCTIONS IN: binding; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-type fold (InterPro:IPR016024); Has 102 Blast hits to 102 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 69; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G64960.1p  transcript_id AT1G64960.1  protein_id AT1G64960.1p  transcript_id AT1G64960.1  
At1g64970	chr1:024135636	0.0	C/24135636-24135993,24135012-24135184,24134632-24134940,24134337-24134543	AT1G64970.1  CDS  gene_syn F13O11.27, F13O11_27, G-TMT, GAMMA-TOCOPHEROL METHYLTRANSFERASE, TMT1, VITAMIN E DEFICIENT 4, VTE4  gene G-TMT  function gamma-tocopherol methyltransferase (g-TMT) mRNA, nuclear; mutant has Deficient in alpha and beta tocopherol; Accumulates gamma tocopherol in leaves  go_component chloroplast|GO:0009507|9851934|ISS  go_process vitamin E biosynthetic process|GO:0010189|9851934|IMP  go_function tocopherol O-methyltransferase activity|GO:0050342|12492478|IDA  product G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE); tocopherol O-methyltransferase  note GAMMA-TOCOPHEROL METHYLTRANSFERASE (G-TMT); FUNCTIONS IN: tocopherol O-methyltransferase activity; INVOLVED IN: vitamin E biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: SMT2 (STEROL METHYLTRANSFERASE 2); S-adenosylmethionine-dependent methyltransferase (TAIR:AT1G20330.1); Has 9156 Blast hits to 9150 proteins in 1310 species: Archae - 222; Bacteria - 6096; Metazoa - 192; Fungi - 307; Plants - 278; Viruses - 0; Other Eukaryotes - 2061 (source: NCBI BLink).  protein_id AT1G64970.1p  transcript_id AT1G64970.1  protein_id AT1G64970.1p  transcript_id AT1G64970.1  
At1g64980	chr1:024137840	0.0	C/24137840-24138619	AT1G64980.1  CDS  gene_syn F13O11.28, F13O11_28  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 662 Blast hits to 662 proteins in 38 species: Archae - 0; Bacteria - 73; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 564 (source: NCBI BLink).  protein_id AT1G64980.1p  transcript_id AT1G64980.1  protein_id AT1G64980.1p  transcript_id AT1G64980.1  
At1g64990	chr1:024145652	0.0	C/24145652-24145866,24145055-24145155,24144562-24144669,24143921-24144041,24143323-24143452,24142736-24142814,24142038-24142126,24141775-24141867,24141637-24141663,24141437-24141523,24141031-24141102,24140542-24140672,24140183-24140336	AT1G64990.1  CDS  gene_syn F13O11.29, F13O11_29, GPCR-TYPE G PROTEIN 1, GTG1  gene GTG1  function Encodes a GPCR-type G protein receptor with nine predicted transmembrane domains. The protein binds abscisic acid (ABA) and is predicted to function as an ABA receptor. It has GTP-binding and GTPase activity and binds to ABA more effectively in the presence of GDP. GTG1 binds to GPA1, the alpha subunit of the heterotrimeric G protein. GPA1 (in its GTP-bound state) affects the GTP binding and GTPase activity of GTG1 and may act to down-regulate GTG1 binding to ABA. GTG1 is widely expressed throughout the plant and appears to be involved in the regulation of several ABA-dependent responses including seed germination, plant development, and promotion of stomatal closure. GTG1 transcript levels do not appear to change in response to ABA or abiotic stresses.  go_component microsome|GO:0005792|19135895|IDA  go_component plasma membrane|GO:0005886|19135895|TAS  go_process response to abscisic acid stimulus|GO:0009737|19135895|IGI  go_process post-embryonic development|GO:0009791|19135895|IGI  go_process vegetative to reproductive phase transition|GO:0010228|19135895|IGI  go_function GTP binding|GO:0005525|19135895|IDA  go_function abscisic acid binding|GO:0010427|19135895|IDA  go_function GTPase binding|GO:0051020|19135895|IPI  product GTG1 (GPCR-TYPE G PROTEIN 1)  note GPCR-TYPE G PROTEIN 1 (GTG1); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: G-protein coupled receptor 89-related (InterPro:IPR015672); BEST Arabidopsis thaliana protein match is: GTG2 (GPCR-TYPE G PROTEIN 2) (TAIR:AT4G27630.2); Has 281 Blast hits to 277 proteins in 114 species: Archae - 2; Bacteria - 0; Metazoa - 146; Fungi - 49; Plants - 22; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT1G64990.1p  transcript_id AT1G64990.1  protein_id AT1G64990.1p  transcript_id AT1G64990.1  
At1g64990	chr1:024145652	0.0	C/24145652-24145866,24145055-24145155,24144562-24144669,24143921-24144041,24143323-24143452,24142736-24142814,24142038-24142126,24141775-24141867,24141637-24141663,24141437-24141523,24141031-24141102,24140542-24140672,24140183-24140336	AT1G64990.2  CDS  gene_syn F13O11.29, F13O11_29, GPCR-TYPE G PROTEIN 1, GTG1  gene GTG1  function Encodes a GPCR-type G protein receptor with nine predicted transmembrane domains. The protein binds abscisic acid (ABA) and is predicted to function as an ABA receptor. It has GTP-binding and GTPase activity and binds to ABA more effectively in the presence of GDP. GTG1 binds to GPA1, the alpha subunit of the heterotrimeric G protein. GPA1 (in its GTP-bound state) affects the GTP binding and GTPase activity of GTG1 and may act to down-regulate GTG1 binding to ABA. GTG1 is widely expressed throughout the plant and appears to be involved in the regulation of several ABA-dependent responses including seed germination, plant development, and promotion of stomatal closure. GTG1 transcript levels do not appear to change in response to ABA or abiotic stresses.  go_component microsome|GO:0005792|19135895|IDA  go_component plasma membrane|GO:0005886|19135895|TAS  go_process response to abscisic acid stimulus|GO:0009737|19135895|IGI  go_process post-embryonic development|GO:0009791|19135895|IGI  go_process vegetative to reproductive phase transition|GO:0010228|19135895|IGI  go_function GTP binding|GO:0005525|19135895|IDA  go_function abscisic acid binding|GO:0010427|19135895|IDA  go_function GTPase binding|GO:0051020|19135895|IPI  product GTG1 (GPCR-TYPE G PROTEIN 1)  note GPCR-TYPE G PROTEIN 1 (GTG1); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: G-protein coupled receptor 89-related (InterPro:IPR015672); BEST Arabidopsis thaliana protein match is: GTG2 (GPCR-TYPE G PROTEIN 2) (TAIR:AT4G27630.2); Has 281 Blast hits to 277 proteins in 114 species: Archae - 2; Bacteria - 0; Metazoa - 146; Fungi - 49; Plants - 22; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT1G64990.2p  transcript_id AT1G64990.2  protein_id AT1G64990.2p  transcript_id AT1G64990.2  
At1g65000	chr1:024147156	0.0	W/24147156-24147286,24148253-24148373	AT1G65000.1  CDS  gene_syn F13O11.34, F13O11_34  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, pollen tube, stamen; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38060.1); Has 23 Blast hits to 23 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G65000.1p  transcript_id AT1G65000.1  protein_id AT1G65000.1p  transcript_id AT1G65000.1  
At1g65010	chr1:024149543	0.0	W/24149543-24149559,24149904-24150099,24150200-24154024	AT1G65010.1  CDS  gene_syn F13O11.30, F13O11_30  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27595.1); Has 289245 Blast hits to 110345 proteins in 2676 species: Archae - 3808; Bacteria - 54712; Metazoa - 119193; Fungi - 19166; Plants - 10632; Viruses - 1818; Other Eukaryotes - 79916 (source: NCBI BLink).  protein_id AT1G65010.1p  transcript_id AT1G65010.1  protein_id AT1G65010.1p  transcript_id AT1G65010.1  
At1g65020	chr1:024156390	0.0	C/24156390-24156511,24156093-24156309,24155445-24155560,24155078-24155257,24154806-24154948,24154523-24154704	AT1G65020.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NERD (InterPro:IPR011528); Has 53 Blast hits to 53 proteins in 19 species: Archae - 0; Bacteria - 18; Metazoa - 9; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G65020.1p  transcript_id AT1G65020.1  protein_id AT1G65020.1p  transcript_id AT1G65020.1  
At1g65030	chr1:024156798	0.0	W/24156798-24157466,24158036-24158333,24158441-24158511	AT1G65030.1  CDS  gene_syn F16G16.2, F16G16_2  function This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase  go_component nucleolus|GO:0005730|15496452|IDA  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|IPI  go_function nucleotide binding|GO:0000166||ISS  go_function protein binding|GO:0005515|18223036|IPI  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: protein binding, nucleotide binding; LOCATED IN: nucleolus, CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); Has 4405 Blast hits to 3283 proteins in 276 species: Archae - 16; Bacteria - 1277; Metazoa - 1326; Fungi - 941; Plants - 216; Viruses - 0; Other Eukaryotes - 629 (source: NCBI BLink).  protein_id AT1G65030.1p  transcript_id AT1G65030.1  protein_id AT1G65030.1p  transcript_id AT1G65030.1  
At1g65032	chr1:024158895	0.0	C/24158895-24159170	AT1G65032.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G65032.1p  transcript_id AT1G65032.1  protein_id AT1G65032.1p  transcript_id AT1G65032.1  
At1g65040	chr1:024161820	0.0	C/24161820-24161992,24161286-24161435,24160951-24161159,24160609-24160768,24160268-24160340,24160105-24160185	AT1G65040.1  CDS  gene_syn F16G16.3, F16G16_3  go_component plasma membrane|GO:0005886|17317660|IDA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G16090.1); Has 5392 Blast hits to 5383 proteins in 205 species: Archae - 0; Bacteria - 0; Metazoa - 2044; Fungi - 473; Plants - 1934; Viruses - 24; Other Eukaryotes - 917 (source: NCBI BLink).  protein_id AT1G65040.1p  transcript_id AT1G65040.1  protein_id AT1G65040.1p  transcript_id AT1G65040.1  
At1g65040	chr1:024162833	0.0	C/24162833-24163365,24161820-24161996,24161286-24161435,24160951-24161159,24160609-24160768,24160268-24160340,24160105-24160185	AT1G65040.2  CDS  gene_syn F16G16.3, F16G16_3  go_component plasma membrane|GO:0005886|17317660|IDA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G16090.1); Has 5419 Blast hits to 5405 proteins in 205 species: Archae - 0; Bacteria - 0; Metazoa - 2047; Fungi - 486; Plants - 1935; Viruses - 24; Other Eukaryotes - 927 (source: NCBI BLink).  protein_id AT1G65040.2p  transcript_id AT1G65040.2  protein_id AT1G65040.2p  transcript_id AT1G65040.2  
At1g65040	chr1:024163237	0.0	C/24163237-24163365,24162833-24163023,24161820-24161996,24161286-24161435,24160951-24161159,24160609-24160768,24160268-24160340,24160105-24160185	AT1G65040.3  CDS  gene_syn F16G16.3, F16G16_3  go_component plasma membrane|GO:0005886|17317660|IDA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G16090.1); Has 5412 Blast hits to 5392 proteins in 205 species: Archae - 0; Bacteria - 0; Metazoa - 2045; Fungi - 476; Plants - 1942; Viruses - 24; Other Eukaryotes - 925 (source: NCBI BLink).  protein_id AT1G65040.3p  transcript_id AT1G65040.3  protein_id AT1G65040.3p  transcript_id AT1G65040.3  
At1g65050	chr1:024165543	0.0	C/24165543-24165679,24165152-24165315,24164924-24165059,24164639-24164730,24164286-24164443	AT1G65050.1  CDS  gene_syn F16G16.5, F16G16_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT1G65150.2); Has 195 Blast hits to 177 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 12; Plants - 173; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G65050.1p  transcript_id AT1G65050.1  protein_id AT1G65050.1p  transcript_id AT1G65050.1  
At1g65060	chr1:024170632	0.0	C/24170632-24171457,24170317-24170555,24168717-24168915,24167927-24168150	AT1G65060.2  CDS  gene_syn 4-COUMARATE:COA LIGASE, 4CL3, F16G16.6, F16G16_6  gene 4CL3  function encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. mRNA levels are not induced in response to wounding or to fungal infection by P. parasitica. mRNA is expressed in flowers, to a lesser degree in mature leaves and siliques and marginally in seedling roots and bolting stems of mature plants. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, cinnamic acid and 5-OH-ferulic acid. At4CL3 was unable to use sinapic acid as substrate.  go_component cellular_component|GO:0005575||ND  go_process response to UV|GO:0009411|10417722|IEP  go_process response to wounding|GO:0009611|10417722|IEP  go_process phenylpropanoid metabolic process|GO:0009698|10417722|TAS  go_process pollen exine formation|GO:0010584||IMP  go_process defense response to fungus|GO:0050832|10417722|IEP  go_function 4-coumarate-CoA ligase activity|GO:0016207|10417722|IDA  product 4CL3; 4-coumarate-CoA ligase  note 4CL3; FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, response to UV, defense response to fungus, response to wounding, pollen exine formation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: 4CL2 (4-COUMARATE:COA LIGASE 2); 4-coumarate-CoA ligase (TAIR:AT3G21240.1); Has 50874 Blast hits to 47054 proteins in 2220 species: Archae - 541; Bacteria - 28426; Metazoa - 2876; Fungi - 2872; Plants - 1266; Viruses - 1; Other Eukaryotes - 14892 (source: NCBI BLink).  protein_id AT1G65060.2p  transcript_id AT1G65060.2  protein_id AT1G65060.2p  transcript_id AT1G65060.2  
At1g65060	chr1:024170632	0.0	C/24170632-24171457,24170317-24170555,24168717-24168915,24168005-24168150,24167770-24167837,24167576-24167678,24167385-24167489	AT1G65060.1  CDS  gene_syn 4-COUMARATE:COA LIGASE, 4CL3, F16G16.6, F16G16_6  gene 4CL3  function encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. mRNA levels are not induced in response to wounding or to fungal infection by P. parasitica. mRNA is expressed in flowers, to a lesser degree in mature leaves and siliques and marginally in seedling roots and bolting stems of mature plants. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, cinnamic acid and 5-OH-ferulic acid. At4CL3 was unable to use sinapic acid as substrate.  go_component cellular_component|GO:0005575||ND  go_process response to UV|GO:0009411|10417722|IEP  go_process response to wounding|GO:0009611|10417722|IEP  go_process phenylpropanoid metabolic process|GO:0009698|10417722|TAS  go_process pollen exine formation|GO:0010584||IMP  go_process defense response to fungus|GO:0050832|10417722|IEP  go_function 4-coumarate-CoA ligase activity|GO:0016207|10417722|IDA  product 4CL3; 4-coumarate-CoA ligase  note 4CL3; FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, response to UV, defense response to fungus, response to wounding, pollen exine formation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: 4CL2 (4-COUMARATE:COA LIGASE 2); 4-coumarate-CoA ligase (TAIR:AT3G21240.1); Has 56576 Blast hits to 52385 proteins in 2279 species: Archae - 567; Bacteria - 29531; Metazoa - 3029; Fungi - 3070; Plants - 1339; Viruses - 1; Other Eukaryotes - 19039 (source: NCBI BLink).  protein_id AT1G65060.1p  transcript_id AT1G65060.1  protein_id AT1G65060.1p  transcript_id AT1G65060.1  
At1g65070	chr1:024175754	0.0	C/24175754-24176244,24174728-24175586,24174093-24174617,24173556-24174017,24173132-24173368	AT1G65070.1  CDS  gene_syn F16G16.7, F16G16_7  go_component nucleus|GO:0005634|14617066|IDA  go_process mismatch repair|GO:0006298||IEA  go_process maintenance of fidelity during DNA-dependent DNA replication|GO:0045005||IEA  go_function damaged DNA binding|GO:0003684||IEA  go_function ATP binding|GO:0005524||IEA  go_function mismatched DNA binding|GO:0030983||IEA  go_process mismatch repair|GO:0006298||ISS  go_function damaged DNA binding|GO:0003684||ISS  go_function ATP binding|GO:0005524||ISS  product DNA mismatch repair MutS family protein  note DNA mismatch repair MutS family protein; FUNCTIONS IN: damaged DNA binding, mismatched DNA binding, ATP binding; INVOLVED IN: mismatch repair, maintenance of fidelity during DNA-dependent DNA replication; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS, type 2 (InterPro:IPR005747), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432); BEST Arabidopsis thaliana protein match is: DNA mismatch repair MutS family protein (TAIR:AT5G54090.1); Has 7965 Blast hits to 7954 proteins in 1530 species: Archae - 100; Bacteria - 4920; Metazoa - 530; Fungi - 505; Plants - 180; Viruses - 3; Other Eukaryotes - 1727 (source: NCBI BLink).  protein_id AT1G65070.1p  transcript_id AT1G65070.1  protein_id AT1G65070.1p  transcript_id AT1G65070.1  
At1g65080	chr1:024176619	0.0	W/24176619-24177018,24177266-24177393,24177693-24177764,24178156-24178257,24178422-24178481,24178687-24178752,24178840-24178887,24179271-24179447,24179527-24179582,24179677-24179794,24180049-24180135,24180345-24180454,24180576-24180729	AT1G65080.1  CDS  gene_syn F16G16.8, F16G16_8  go_process protein insertion into membrane|GO:0051205||IEA  go_function binding|GO:0005488||IEA  go_component membrane|GO:0016020|11152613|ISS  product OXA1 family protein  note OXA1 family protein; FUNCTIONS IN: binding; INVOLVED IN: protein insertion into membrane; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), 60 kDa inner membrane insertion protein (InterPro:IPR001708), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT3G44370.1); Has 755 Blast hits to 750 proteins in 266 species: Archae - 0; Bacteria - 354; Metazoa - 183; Fungi - 103; Plants - 52; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT1G65080.1p  transcript_id AT1G65080.1  protein_id AT1G65080.1p  transcript_id AT1G65080.1  
At1g65090	chr1:024182092	0.0	C/24182092-24182668,24181955-24182022,24181513-24181623,24181353-24181436,24180973-24181272	AT1G65090.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36100.2).  protein_id AT1G65090.2p  transcript_id AT1G65090.2  protein_id AT1G65090.2p  transcript_id AT1G65090.2  
At1g65090	chr1:024182092	0.0	C/24182092-24182668,24181955-24182022,24181536-24181623,24181187-24181194	AT1G65090.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36100.2); Has 1437 Blast hits to 963 proteins in 159 species: Archae - 0; Bacteria - 44; Metazoa - 629; Fungi - 109; Plants - 75; Viruses - 40; Other Eukaryotes - 540 (source: NCBI BLink).  protein_id AT1G65090.1p  transcript_id AT1G65090.1  protein_id AT1G65090.1p  transcript_id AT1G65090.1  
At1g65110	chr1:024187915	0.0	C/24187915-24188330,24186412-24187831,24186207-24186335,24185977-24186111,24185845-24185891,24185610-24185740,24185442-24185521,24185116-24185313,24184827-24185033,24184599-24184746,24184371-24184504,24184198-24184287,24183959-24184108	AT1G65110.1  CDS  gene_syn T23K8.2, T23K8_2  go_component intracellular|GO:0005622||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_function zinc ion binding|GO:0008270||IEA  product ubiquitin carboxyl-terminal hydrolase-related  note ubiquitin carboxyl-terminal hydrolase-related; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: ubiquitin carboxyl-terminal hydrolase-related (TAIR:AT1G65120.2); Has 196 Blast hits to 173 proteins in 40 species: Archae - 0; Bacteria - 2; Metazoa - 37; Fungi - 5; Plants - 123; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G65110.1p  transcript_id AT1G65110.1  protein_id AT1G65110.1p  transcript_id AT1G65110.1  
At1g65113	chr1:024189464	0.0	W/24189464-24189533,24189629-24189837	AT1G65113.1  CDS  gene_syn SCR-Like 2, SCRL2  gene SCRL2  function Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165||IEA  product SCRL2 (SCR-Like 2)  note SCR-Like 2 (SCRL2); INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility response (InterPro:IPR010682); BEST Arabidopsis thaliana protein match is: SCRL1 (SCR-Like 1) (TAIR:AT4G10457.1); Has 26 Blast hits to 26 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G65113.1p  transcript_id AT1G65113.1  protein_id AT1G65113.1p  transcript_id AT1G65113.1  
At1g65120	chr1:024193883	0.0	C/24193883-24195907,24193681-24193809,24193464-24193598,24193343-24193377,24193088-24193239,24192906-24193006,24192580-24192777,24192289-24192495,24192053-24192200,24191721-24191956	AT1G65120.1  CDS  gene_syn T23K8.3, T23K8_3  go_component intracellular|GO:0005622||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_function zinc ion binding|GO:0008270||IEA  product ubiquitin carboxyl-terminal hydrolase-related  note ubiquitin carboxyl-terminal hydrolase-related; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: ubiquitin carboxyl-terminal hydrolase-related (TAIR:AT1G65110.1); Has 328 Blast hits to 302 proteins in 63 species: Archae - 0; Bacteria - 13; Metazoa - 35; Fungi - 35; Plants - 116; Viruses - 8; Other Eukaryotes - 121 (source: NCBI BLink).  protein_id AT1G65120.1p  transcript_id AT1G65120.1  protein_id AT1G65120.1p  transcript_id AT1G65120.1  
At1g65120	chr1:024193883	0.0	C/24193883-24195907,24193681-24193809,24193464-24193598,24193343-24193377,24193088-24193239,24192906-24193006,24192580-24192777,24192289-24192495,24192053-24192200,24191823-24191956,24191645-24191734,24191457-24191546	AT1G65120.2  CDS  gene_syn T23K8.3, T23K8_3  go_component intracellular|GO:0005622||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_function zinc ion binding|GO:0008270||IEA  product ubiquitin carboxyl-terminal hydrolase-related  note ubiquitin carboxyl-terminal hydrolase-related; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: ubiquitin carboxyl-terminal hydrolase-related (TAIR:AT1G65110.1); Has 376 Blast hits to 343 proteins in 73 species: Archae - 0; Bacteria - 13; Metazoa - 57; Fungi - 35; Plants - 141; Viruses - 8; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT1G65120.2p  transcript_id AT1G65120.2  protein_id AT1G65120.2p  transcript_id AT1G65120.2  
At1g65130	chr1:024199112	0.0	C/24199112-24201022,24198902-24199030,24198699-24198800,24198565-24198611,24198070-24198179,24197900-24197988,24197586-24197774,24197274-24197480,24197053-24197200,24196823-24196953,24196649-24196759,24196472-24196558	AT1G65130.1  CDS  gene_syn T23K8.4, T23K8_4  go_component intracellular|GO:0005622||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_function zinc ion binding|GO:0008270||IEA  product ubiquitin carboxyl-terminal hydrolase-related  note ubiquitin carboxyl-terminal hydrolase-related; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: ubiquitin carboxyl-terminal hydrolase-related (TAIR:AT1G65200.1); Has 192 Blast hits to 176 proteins in 47 species: Archae - 0; Bacteria - 3; Metazoa - 21; Fungi - 19; Plants - 114; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT1G65130.1p  transcript_id AT1G65130.1  protein_id AT1G65130.1p  transcript_id AT1G65130.1  
At1g65140	chr1:024201620	0.0	W/24201620-24201669,24201759-24201843,24201933-24202082,24202153-24202335,24202416-24202557,24202641-24202777,24202857-24202937,24203023-24203100,24203179-24203226	AT1G65140.1  CDS  gene_syn T23K8.5, T23K8_5  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_function ubiquitin thiolesterase activity|GO:0004221||ISS  product ubiquitin thiolesterase  note ubiquitin thiolesterase; FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin carboxyl-terminal hydrolase family protein (TAIR:AT1G65160.1); Has 79 Blast hits to 79 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G65140.1p  transcript_id AT1G65140.1  protein_id AT1G65140.1p  transcript_id AT1G65140.1  
At1g65150	chr1:024205422	0.0	C/24205422-24205558,24205077-24205240,24204734-24205001,24204487-24204650,24204167-24204324	AT1G65150.1  CDS  gene_syn T23K8.6, T23K8_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT1G65050.1); Has 254 Blast hits to 212 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 241; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G65150.1p  transcript_id AT1G65150.1  protein_id AT1G65150.1p  transcript_id AT1G65150.1  
At1g65150	chr1:024205422	0.0	C/24205422-24205558,24205077-24205240,24204734-24205001,24204487-24204650,24204167-24204324	AT1G65150.2  CDS  gene_syn T23K8.6, T23K8_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT1G65050.1); Has 254 Blast hits to 212 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 241; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G65150.2p  transcript_id AT1G65150.2  protein_id AT1G65150.2p  transcript_id AT1G65150.2  
At1g65160	chr1:024206224	0.0	W/24206224-24206273,24206357-24206444,24206527-24206622,24206707-24206889,24206962-24207103,24207202-24207338,24207422-24207502,24207586-24207738	AT1G65160.1  CDS  gene_syn T23K8.7, T23K8_7  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_function ubiquitin thiolesterase activity|GO:0004221||ISS  product ubiquitin carboxyl-terminal hydrolase family protein  note ubiquitin carboxyl-terminal hydrolase family protein; FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin thiolesterase (TAIR:AT1G65140.1); Has 126 Blast hits to 126 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 51; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G65160.1p  transcript_id AT1G65160.1  protein_id AT1G65160.1p  transcript_id AT1G65160.1  
At1g65170	chr1:024209613	0.0	W/24209613-24209624,24209727-24209852,24209944-24210072,24210213-24210354,24210454-24210590,24210681-24210761,24210864-24210941,24211042-24211116	AT1G65170.1  CDS  gene_syn T23K8.8, T23K8_8  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_function ubiquitin thiolesterase activity|GO:0004221||ISS  product ubiquitin carboxyl-terminal hydrolase family protein  note ubiquitin carboxyl-terminal hydrolase family protein; FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin carboxyl-terminal hydrolase family protein (TAIR:AT1G65160.1); Has 101 Blast hits to 101 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G65170.1p  transcript_id AT1G65170.1  protein_id AT1G65170.1p  transcript_id AT1G65170.1  
At1g65180	chr1:024211861	0.0	C/24211861-24213822	AT1G65180.1  CDS  gene_syn T23K8.9, T23K8_9  go_component intracellular|GO:0005622||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular signaling cascade; LOCATED IN: intracellular; EXPRESSED IN: shoot apex, pedicel, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, C2H2-type (InterPro:IPR007087), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT3G43890.1); Has 1951 Blast hits to 941 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 407; Fungi - 0; Plants - 1445; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).  protein_id AT1G65180.1p  transcript_id AT1G65180.1  protein_id AT1G65180.1p  transcript_id AT1G65180.1  
At1g65190	chr1:024216028	0.0	C/24216028-24217218	AT1G65190.1  CDS  gene_syn T23K8.10, T23K8_10  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function ATP binding|GO:0005524||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G65250.1); Has 12296 Blast hits to 12153 proteins in 442 species: Archae - 0; Bacteria - 301; Metazoa - 1044; Fungi - 89; Plants - 10546; Viruses - 9; Other Eukaryotes - 307 (source: NCBI BLink).  protein_id AT1G65190.1p  transcript_id AT1G65190.1  protein_id AT1G65190.1p  transcript_id AT1G65190.1  
At1g65200	chr1:024220876	0.0	C/24220876-24222789,24220670-24220798,24220453-24220578,24220321-24220367,24220102-24220235,24219932-24220026,24219620-24219808,24219309-24219515,24219060-24219207,24218830-24218960,24218656-24218745,24218470-24218565	AT1G65200.1  CDS  gene_syn T23K8.11, T23K8_11  go_component intracellular|GO:0005622||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_function zinc ion binding|GO:0008270||IEA  product ubiquitin carboxyl-terminal hydrolase-related  note ubiquitin carboxyl-terminal hydrolase-related; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: ubiquitin carboxyl-terminal hydrolase-related (TAIR:AT1G65130.1); Has 160 Blast hits to 144 proteins in 31 species: Archae - 0; Bacteria - 4; Metazoa - 20; Fungi - 6; Plants - 112; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G65200.1p  transcript_id AT1G65200.1  protein_id AT1G65200.1p  transcript_id AT1G65200.1  
At1g65210	chr1:024224812	0.0	W/24224812-24224819,24225077-24225815	AT1G65210.1  CDS  gene_syn T23K8.12, T23K8_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: lyase (TAIR:AT4G38030.1); Has 91 Blast hits to 67 proteins in 11 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G65210.1p  transcript_id AT1G65210.1  protein_id AT1G65210.1p  transcript_id AT1G65210.1  
At1g65220	chr1:024226204	0.0	W/24226204-24226208,24226499-24226522,24226846-24226951,24227053-24227121,24227260-24227753,24228081-24228342,24228428-24228636,24228733-24228799	AT1G65220.1  CDS  gene_syn T23K8.13, T23K8_13  go_function binding|GO:0005488||IEA  go_process regulation of translational initiation|GO:0006446||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein  note eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein; FUNCTIONS IN: binding, translation initiation factor activity; INVOLVED IN: regulation of translational initiation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: eIF4-gamma/eIF5/eIF2-epsilon (InterPro:IPR003307), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein (TAIR:AT5G36230.1); Has 618 Blast hits to 616 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 468; Fungi - 26; Plants - 99; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT1G65220.1p  transcript_id AT1G65220.1  protein_id AT1G65220.1p  transcript_id AT1G65220.1  
At1g65230	chr1:024229167	0.0	W/24229167-24229281,24229554-24229768,24230049-24230129,24230222-24230569,24230663-24230764	AT1G65230.1  CDS  gene_syn T23K8.14, T23K8_14  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 29 Blast hits to 29 proteins in 11 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G65230.1p  transcript_id AT1G65230.1  protein_id AT1G65230.1p  transcript_id AT1G65230.1  
At1g65240	chr1:024233135	0.0	C/24233135-24233349,24232815-24232944,24232490-24232731,24232185-24232409,24231925-24232078,24231764-24231834,24231543-24231633,24231350-24231425,24231197-24231268,24230963-24231114	AT1G65240.1  CDS  gene_syn T23K8.15, T23K8_15  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT5G36260.1); Has 2320 Blast hits to 2308 proteins in 231 species: Archae - 0; Bacteria - 0; Metazoa - 558; Fungi - 522; Plants - 1064; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).  protein_id AT1G65240.1p  transcript_id AT1G65240.1  protein_id AT1G65240.1p  transcript_id AT1G65240.1  
At1g65250	chr1:024234432	0.0	W/24234432-24235550	AT1G65250.1  CDS  gene_syn T8F5.1, T8F5_1  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G65190.1); Has 13616 Blast hits to 13465 proteins in 570 species: Archae - 0; Bacteria - 566; Metazoa - 1734; Fungi - 75; Plants - 10772; Viruses - 11; Other Eukaryotes - 458 (source: NCBI BLink).  protein_id AT1G65250.1p  transcript_id AT1G65250.1  protein_id AT1G65250.1p  transcript_id AT1G65250.1  
At1g65260	chr1:024236329	0.0	W/24236329-24236467,24236840-24236949,24237046-24237156,24237290-24237354,24237440-24237521,24238280-24238354,24238780-24238850,24238971-24239053,24239625-24239689,24239924-24239998,24240312-24240428	AT1G65260.1  CDS  gene_syn PLASTID TRANSCRIPTIONALLY ACTIVE4, PTAC4, T8F5.2, T8F5_2  gene PTAC4  go_component nucleoid|GO:0009295|16326926|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component plastid chromosome|GO:0009508|16326926|IDA  go_component chloroplast thylakoid|GO:0009534|12766230|IDA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  product PTAC4 (PLASTID TRANSCRIPTIONALLY ACTIVE4)  note PLASTID TRANSCRIPTIONALLY ACTIVE4 (PTAC4); INVOLVED IN: biological_process unknown; LOCATED IN: in 8 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PspA/IM30 (InterPro:IPR007157); Has 1986 Blast hits to 1960 proteins in 677 species: Archae - 19; Bacteria - 1376; Metazoa - 142; Fungi - 53; Plants - 51; Viruses - 92; Other Eukaryotes - 253 (source: NCBI BLink).  protein_id AT1G65260.1p  transcript_id AT1G65260.1  protein_id AT1G65260.1p  transcript_id AT1G65260.1  
At1g65270	chr1:024241855	0.0	W/24241855-24242175,24242357-24242419,24242511-24242606,24243006-24243053,24243228-24243299,24243943-24244001,24244208-24244298,24244376-24244504	AT1G65270.1  CDS  gene_syn T8F5.4, T8F5_4  go_component plasma membrane|GO:0005886|17151019|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 116 Blast hits to 116 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 88; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G65270.1p  transcript_id AT1G65270.1  protein_id AT1G65270.1p  transcript_id AT1G65270.1  
At1g65270	chr1:024241855	0.0	W/24241855-24242175,24242357-24242419,24242511-24242606,24243006-24243053,24243228-24243299,24243943-24244001,24244208-24244298,24244376-24244504	AT1G65270.2  CDS  gene_syn T8F5.4, T8F5_4  go_component plasma membrane|GO:0005886|17151019|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 116 Blast hits to 116 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 88; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G65270.2p  transcript_id AT1G65270.2  protein_id AT1G65270.2p  transcript_id AT1G65270.2  
At1g65270	chr1:024241855	0.0	W/24241855-24242175,24242357-24242419,24242511-24242606,24243006-24243053,24243228-24243299,24243943-24244001,24244208-24244298,24244376-24244504	AT1G65270.3  CDS  gene_syn T8F5.4, T8F5_4  go_component plasma membrane|GO:0005886|17151019|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 116 Blast hits to 116 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 88; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G65270.3p  transcript_id AT1G65270.3  protein_id AT1G65270.3p  transcript_id AT1G65270.3  
At1g65280	chr1:024245501	0.0	W/24245501-24245893,24246002-24246309,24246399-24246476,24246570-24246672,24246777-24246865,24246998-24247109,24247269-24247322,24247411-24247459,24247550-24247650,24247739-24247854,24248158-24248521	AT1G65280.1  CDS  gene_syn T8F5.5, T8F5_5  go_function heat shock protein binding|GO:0031072||IEA  go_process protein folding|GO:0006457||ISS  product heat shock protein binding  note heat shock protein binding; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT5G22080.1); Has 22647 Blast hits to 16088 proteins in 1412 species: Archae - 102; Bacteria - 2761; Metazoa - 9875; Fungi - 2142; Plants - 1453; Viruses - 33; Other Eukaryotes - 6281 (source: NCBI BLink).  protein_id AT1G65280.1p  transcript_id AT1G65280.1  protein_id AT1G65280.1p  transcript_id AT1G65280.1  
At1g65290	chr1:024250163	0.0	C/24250163-24250366,24249088-24249264	AT1G65290.1  CDS  gene_syn T8F5.6, T8F5_6, mitochondrial acyl carrier protein 2, mtACP2  gene mtACP2  function Encodes a member of the mitochondrial acyl carrier protein (ACP) family. As part of the mitochondrial matrix, it is likely to be involved in fatty acid or lipoic acid biogenesis.  go_process fatty acid biosynthetic process|GO:0006633||IEA  go_function metal ion binding|GO:0046872|12606038|IDA  go_component mitochondrion|GO:0005739|12606038|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial matrix|GO:0005759|17406791|IDA  go_process fatty acid biosynthetic process|GO:0006633||ISS  go_function acyl carrier activity|GO:0000036||ISS  product mtACP2 (mitochondrial acyl carrier protein 2); acyl carrier/ metal ion binding  note mitochondrial acyl carrier protein 2 (mtACP2); FUNCTIONS IN: acyl carrier activity, metal ion binding; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: mitochondrion, mitochondrial matrix; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphopantetheine-binding (InterPro:IPR006163), Acyl carrier protein (ACP) (InterPro:IPR003231), Acyl carrier protein-like (InterPro:IPR009081), Phosphopantetheine attachment site (InterPro:IPR006162); BEST Arabidopsis thaliana protein match is: MTACP-1 (MITOCHONDRIAL ACYL CARRIER PROTEIN 1); acyl carrier/ cofactor binding / phosphopantetheine binding (TAIR:AT2G44620.1); Has 5340 Blast hits to 5339 proteins in 1473 species: Archae - 0; Bacteria - 2975; Metazoa - 166; Fungi - 99; Plants - 245; Viruses - 2; Other Eukaryotes - 1853 (source: NCBI BLink).  protein_id AT1G65290.1p  transcript_id AT1G65290.1  protein_id AT1G65290.1p  transcript_id AT1G65290.1  
At1g65295	chr1:024251567	0.0	W/24251567-24251650,24251791-24252054	AT1G65295.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01015.1); Has 55 Blast hits to 55 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G65295.1p  transcript_id AT1G65295.1  protein_id AT1G65295.1p  transcript_id AT1G65295.1  
At1g65300	chr1:024254929	0.0	W/24254929-24255765	AT1G65300.1  CDS  gene_syn AGAMOUS-LIKE 38, AGL38, PHE2, PHERES2, T8F5.8, T8F5_8  gene AGL38  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product AGL38 (AGAMOUS-LIKE 38); DNA binding / transcription factor  note AGAMOUS-LIKE 38 (AGL38); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: PHE1 (PHERES1); DNA binding / transcription factor (TAIR:AT1G65330.1); Has 2882 Blast hits to 2876 proteins in 349 species: Archae - 0; Bacteria - 0; Metazoa - 92; Fungi - 5; Plants - 2775; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G65300.1p  transcript_id AT1G65300.1  protein_id AT1G65300.1p  transcript_id AT1G65300.1  
At1g65310	chr1:024257262	0.0	W/24257262-24257543,24257658-24257851,24257947-24258319	AT1G65310.1  CDS  gene_syn ATXTH17, T8F5.9, T8F5_9, XTH17, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17  gene XTH17  function putative xyloglucan endotransglycosylase/hydrolase, expressed in the mature or basal regions of both the main and lateral roots, but not in the tip of these roots where cell division occurs.  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process cellular glucan metabolic process|GO:0006073||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product XTH17 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17); hydrolase, acting on glycosyl bonds / hydrolase, hydrolyzing O-glycosyl compounds / xyloglucan:xyloglucosyl transferase  note XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17 (XTH17); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: plant-type cell wall; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16, active site (InterPro:IPR008263), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: XTH18 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18); hydrolase, acting on glycosyl bonds / hydrolase, hydrolyzing O-glycosyl compounds / xyloglucan:xyloglucosyl transferase (TAIR:AT4G30280.1); Has 1400 Blast hits to 1392 proteins in 214 species: Archae - 0; Bacteria - 194; Metazoa - 0; Fungi - 309; Plants - 807; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT1G65310.1p  transcript_id AT1G65310.1  protein_id AT1G65310.1p  transcript_id AT1G65310.1  
At1g65320	chr1:024262295	0.0	C/24262295-24262644,24260168-24261095	AT1G65320.1  CDS  gene_syn T8F5.10, T8F5_10  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product CBS domain-containing protein  note CBS domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G53750.1); Has 76 Blast hits to 75 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G65320.1p  transcript_id AT1G65320.1  protein_id AT1G65320.1p  transcript_id AT1G65320.1  
At1g65330	chr1:024266481	0.0	C/24266481-24267320	AT1G65330.1  CDS  gene_syn AGL37, PHE1, PHERES1, T8F5.11, T8F5_11  gene PHE1  function Type I MADS-box protein, regulated by MEA and FIE, expressed transiently after fertilization in embryo and endosperm.  go_component nucleus|GO:0005634|12815071|ISS  go_component nucleus|GO:0005634|12815071|NAS  go_process embryonic development ending in seed dormancy|GO:0009793|12815071|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12815071|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product PHE1 (PHERES1); DNA binding / transcription factor  note PHERES1 (PHE1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: nucleus; EXPRESSED IN: embryo, seed micropyle, endosperm, pollen tube, female gametophyte; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL38 (AGAMOUS-LIKE 38); DNA binding / transcription factor (TAIR:AT1G65300.1); Has 2856 Blast hits to 2855 proteins in 351 species: Archae - 0; Bacteria - 0; Metazoa - 143; Fungi - 53; Plants - 2641; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT1G65330.1p  transcript_id AT1G65330.1  protein_id AT1G65330.1p  transcript_id AT1G65330.1  
At1g65340	chr1:024268135	0.0	C/24268135-24269646	AT1G65340.1  CDS  gene_syn CYP96A3, T8F5.12, T8F5_12  gene CYP96A3  function member of CYP96A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP96A3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP96A3; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP96A4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT5G52320.1); Has 20318 Blast hits to 20274 proteins in 1079 species: Archae - 19; Bacteria - 1533; Metazoa - 9219; Fungi - 3982; Plants - 4790; Viruses - 3; Other Eukaryotes - 772 (source: NCBI BLink).  protein_id AT1G65340.1p  transcript_id AT1G65340.1  protein_id AT1G65340.1p  transcript_id AT1G65340.1  
At1g65342	chr1:024271276	0.0	W/24271276-24271536,24271626-24271700	AT1G65342.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G65342.1p  transcript_id AT1G65342.1  protein_id AT1G65342.1p  transcript_id AT1G65342.1  
At1g65346	chr1:024273910	0.0	C/24273910-24274038,24273181-24273420	AT1G65346.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G07705.1).  protein_id AT1G65346.1p  transcript_id AT1G65346.1  protein_id AT1G65346.1p  transcript_id AT1G65346.1  
At1g65347	chr1:024274897	0.0	W/24274897-24275690	AT1G65347.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 7.5e-50 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At1g65350	chr1:024276419	0.0	C/24276419-24277275,24272518-24272620	AT1G65350.1  CDS  gene_syn T8F5.13, T8F5_13, UBQ13  gene UBQ13  function polyubiquitin gene,Columbia ecotype revealed that the gene contained a 3.9-kb insertion in the coding region from mitochondrial DNA.  go_component intracellular|GO:0005622||TAS  go_process protein modification process|GO:0006464||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|8382544|ISS  go_function protein binding|GO:0005515|8382544|ISS  product UBQ13; protein binding  note UBQ13; FUNCTIONS IN: protein binding; INVOLVED IN: protein modification process, ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: UBQ4; protein binding (TAIR:AT5G20620.1); Has 17787 Blast hits to 5440 proteins in 613 species: Archae - 0; Bacteria - 32; Metazoa - 8320; Fungi - 1800; Plants - 3220; Viruses - 603; Other Eukaryotes - 3812 (source: NCBI BLink).  protein_id AT1G65350.1p  transcript_id AT1G65350.1  protein_id AT1G65350.1p  transcript_id AT1G65350.1  
At1g65352	chr1:024277772	0.0	W/24277772-24277829,24278111-24278298	AT1G65352.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62627.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G65352.1p  transcript_id AT1G65352.1  protein_id AT1G65352.1p  transcript_id AT1G65352.1  
At1g65360	chr1:024281337	0.0	W/24281337-24281648,24281783-24282151	AT1G65360.1  CDS  gene_syn AGAMOUS-LIKE 23, AGL23, T8F5.14, T8F5_14  gene AGL23  function Encodes AGL23, a Type I MADS-box gene that controls female gametophyte development and the biogenesis of organelles during embryo development.  go_component nucleus|GO:0005634||IEA  go_process embryo sac development|GO:0009553|18346189|IMP  go_process chloroplast organization|GO:0009658|18346189|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product AGL23 (AGAMOUS-LIKE 23); DNA binding / transcription factor  note AGAMOUS-LIKE 23 (AGL23); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: chloroplast organization, embryo sac development; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL28 (AGAMOUS-LIKE 28); DNA binding / transcription factor (TAIR:AT1G01530.1); Has 4097 Blast hits to 4096 proteins in 552 species: Archae - 0; Bacteria - 0; Metazoa - 547; Fungi - 202; Plants - 3297; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT1G65360.1p  transcript_id AT1G65360.1  protein_id AT1G65360.1p  transcript_id AT1G65360.1  
At1g65365	chr1:024282516	0.0	C/24282516-24284206	AT1G65365.1  pseudogenic_transcript  pseudo  gene_syn T8F5.26  note pseudogene, putative protein kinase, blastp match of 45% identity and 1.7e-40 P-value to GP|21671940|gb|AAM74302.1|AC083944_20|AC083944 Putative protein kinase {Oryza sativa (japonica cultivar-group)}  
At1g65370	chr1:024285594	0.0	C/24285594-24285699,24285230-24285497,24284983-24285146,24284707-24284852	AT1G65370.1  CDS  gene_syn T8F5.15, T8F5_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT1G65150.2); Has 227 Blast hits to 224 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 220; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G65370.1p  transcript_id AT1G65370.1  protein_id AT1G65370.1p  transcript_id AT1G65370.1  
At1g65380	chr1:024286943	0.0	W/24286943-24289105	AT1G65380.1  CDS  gene_syn AtRLP10, CLV2, Receptor Like Protein 10, T8F5.16, T8F5_16, clavata 2  gene CLV2  function Receptor-like protein containing leucine-rich repeats. Regulates both meristem and organ development in Arabidopsis.  go_component membrane|GO:0016020|10521522|ISS  go_process signal transduction|GO:0007165|10521522|TAS  go_process anatomical structure morphogenesis|GO:0009653|9729492|IMP  go_process regulation of flower development|GO:0009909|9729492|IMP  go_process regulation of growth|GO:0040008|9729492|IMP  go_process meristem development|GO:0048507|18434605|IMP  go_function receptor signaling protein activity|GO:0005057|10521522|ISS  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product CLV2 (clavata 2); protein binding / receptor signaling protein  note clavata 2 (CLV2); FUNCTIONS IN: protein binding, receptor signaling protein activity; INVOLVED IN: anatomical structure morphogenesis, signal transduction, meristem development, regulation of growth, regulation of flower development; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT4G36180.1); Has 62939 Blast hits to 19178 proteins in 809 species: Archae - 25; Bacteria - 3095; Metazoa - 20822; Fungi - 805; Plants - 33413; Viruses - 6; Other Eukaryotes - 4773 (source: NCBI BLink).  protein_id AT1G65380.1p  transcript_id AT1G65380.1  protein_id AT1G65380.1p  transcript_id AT1G65380.1  
At1g65385	chr1:024289658	0.0	C/24289658-24291024	AT1G65385.1  pseudogenic_transcript  pseudo  gene_syn T8F5.17  note pseudogene, putative serpin, blastp match of 51% identity and 9.6e-61 P-value to GP|26224736|gb|AAN76362.1||AY158152 serpin-like protein {Citrus x paradisi}  
At1g65390	chr1:024292566	0.0	W/24292566-24293068,24293187-24293339,24293764-24293839,24293937-24294067,24294194-24294566	AT1G65390.1  CDS  gene_syn ARABIDOPSIS THALIANA PHLOEM PROTEIN 2 A5, AT1G65400, ATPP2-A5, T8F5.18, T8F5_18  gene ATPP2-A5  go_component chloroplast|GO:0009507||IEA  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_process defense response|GO:0006952||ISS  go_function carbohydrate binding|GO:0030246|12529520|ISS  product ATPP2-A5 (ARABIDOPSIS THALIANA PHLOEM PROTEIN 2 A5); carbohydrate binding  note ARABIDOPSIS THALIANA PHLOEM PROTEIN 2 A5 (ATPP2-A5); FUNCTIONS IN: carbohydrate binding; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: transmembrane receptor (TAIR:AT2G32140.1); Has 1094 Blast hits to 1039 proteins in 58 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 1090; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G65390.1p  transcript_id AT1G65390.1  protein_id AT1G65390.1p  transcript_id AT1G65390.1  
At1g65390	chr1:024292566	0.0	W/24292566-24293068,24293187-24293339,24293764-24293839,24293937-24294067,24294202-24294232	AT1G65390.2  CDS  gene_syn ARABIDOPSIS THALIANA PHLOEM PROTEIN 2 A5, AT1G65400, ATPP2-A5, T8F5.18, T8F5_18  gene ATPP2-A5  go_component chloroplast|GO:0009507||IEA  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_process defense response|GO:0006952||ISS  go_function carbohydrate binding|GO:0030246|12529520|ISS  product ATPP2-A5 (ARABIDOPSIS THALIANA PHLOEM PROTEIN 2 A5); carbohydrate binding  note ARABIDOPSIS THALIANA PHLOEM PROTEIN 2 A5 (ATPP2-A5); FUNCTIONS IN: carbohydrate binding; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: transmembrane receptor (TAIR:AT2G32140.1); Has 859 Blast hits to 809 proteins in 39 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 855; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G65390.2p  transcript_id AT1G65390.2  protein_id AT1G65390.2p  transcript_id AT1G65390.2  
At1g65410	chr1:024295362	0.0	W/24295362-24295547,24295684-24295815,24295922-24296017,24296095-24296172,24296252-24296313,24296427-24296502,24296606-24296713,24296859-24297034,24297118-24297202,24297294-24297332	AT1G65410.1  CDS  gene_syn ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 11, ATNAP11, T8F5.19, T8F5_19, TGD3, TRIGALACTOSYLDIACYLGLYCEROL 3  gene ATNAP11  function member of NAP subfamily  go_component chloroplast|GO:0009507|18431481|IDA  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  product ATNAP11 (ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 11); transporter  note ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 11 (ATNAP11); FUNCTIONS IN: transporter activity; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATNAP3; transporter (TAIR:AT1G67940.1); Has 251007 Blast hits to 226081 proteins in 2603 species: Archae - 4394; Bacteria - 167398; Metazoa - 8004; Fungi - 4193; Plants - 2537; Viruses - 18; Other Eukaryotes - 64463 (source: NCBI BLink).  protein_id AT1G65410.1p  transcript_id AT1G65410.1  protein_id AT1G65410.1p  transcript_id AT1G65410.1  
At1g65420	chr1:024298235	0.0	C/24298235-24298374,24297669-24298122	AT1G65420.1  CDS  gene_syn T8F5.20, T8F5_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF565 (InterPro:IPR007572); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56830.3); Has 136 Blast hits to 136 proteins in 45 species: Archae - 0; Bacteria - 43; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT1G65420.1p  transcript_id AT1G65420.1  protein_id AT1G65420.1p  transcript_id AT1G65420.1  
At1g65430	chr1:024306016	0.0	C/24306016-24306159,24305707-24305831,24305496-24305601,24305323-24305413,24304940-24305112,24304681-24304785,24304487-24304575,24304081-24304188,24303694-24303784,24303507-24303596,24302726-24302773,24302392-24302463,24302220-24302319,24301628-24301754,24301165-24301399	AT1G65430.1  CDS  gene_syn T8F5.21, T8F5_21  go_component intracellular|GO:0005622||IEA  go_function ubiquitin-protein ligase activity|GO:0004842|15644464|IDA  product zinc finger protein-related  note zinc finger protein-related; FUNCTIONS IN: ubiquitin-protein ligase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7) (TAIR:AT2G31510.1); Has 2292 Blast hits to 2274 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 1174; Fungi - 360; Plants - 363; Viruses - 3; Other Eukaryotes - 392 (source: NCBI BLink).  protein_id AT1G65430.1p  transcript_id AT1G65430.1  protein_id AT1G65430.1p  transcript_id AT1G65430.1  
At1g65440	chr1:024314297	0.0	C/24314297-24314327,24314080-24314172,24313435-24313564,24313133-24313196,24312878-24313028,24312679-24312799,24312358-24312595,24312071-24312259,24311889-24311996,24311410-24311796,24311229-24311336,24310343-24311122,24308647-24309960,24308327-24308536,24307709-24308171,24306945-24307501	AT1G65440.1  CDS  gene_syn GLOBAL TRANSCRIPTION FACTOR GROUP B, GTB1, T8F5.22, T8F5_22  gene GTB1  function Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly.  go_function transcription elongation regulator activity|GO:0003711||IEA  go_function RNA binding|GO:0003723||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_component cellular_component|GO:0005575||ND  go_process chromatin assembly or disassembly|GO:0006333||ISS  go_process transcription initiation|GO:0006352||ISS  product GTB1; RNA binding / hydrolase, acting on ester bonds / transcription elongation regulator  note GTB1; FUNCTIONS IN: transcription elongation regulator activity, hydrolase activity, acting on ester bonds, RNA binding; INVOLVED IN: chromatin assembly or disassembly, transcription initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Resolvase, RNase H-like fold (InterPro:IPR006641), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), S1, RNA binding (InterPro:IPR003029), Transcription elongation factor Spt6 (InterPro:IPR017072); BEST Arabidopsis thaliana protein match is: RNA binding / hydrolase, acting on ester bonds / protein binding / transcription elongation regulator (TAIR:AT1G63210.1); Has 138502 Blast hits to 51284 proteins in 2316 species: Archae - 254; Bacteria - 29368; Metazoa - 50778; Fungi - 12182; Plants - 11118; Viruses - 1836; Other Eukaryotes - 32966 (source: NCBI BLink).  protein_id AT1G65440.1p  transcript_id AT1G65440.1  protein_id AT1G65440.1p  transcript_id AT1G65440.1  
At1g65440	chr1:024314297	0.0	C/24314297-24314327,24314080-24314172,24313435-24313564,24313133-24313196,24312878-24313028,24312679-24312799,24312358-24312595,24312071-24312259,24311889-24311996,24311410-24311796,24311229-24311336,24310343-24311122,24308647-24309960,24308327-24308536,24307709-24308171,24307288-24307501,24306908-24307235	AT1G65440.2  CDS  gene_syn GLOBAL TRANSCRIPTION FACTOR GROUP B, GTB1, T8F5.22, T8F5_22  gene GTB1  function Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly.  go_function transcription elongation regulator activity|GO:0003711||IEA  go_function RNA binding|GO:0003723||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_component cellular_component|GO:0005575||ND  go_process chromatin assembly or disassembly|GO:0006333||ISS  go_process transcription initiation|GO:0006352||ISS  product GTB1; RNA binding / hydrolase, acting on ester bonds / transcription elongation regulator  note GTB1; FUNCTIONS IN: transcription elongation regulator activity, hydrolase activity, acting on ester bonds, RNA binding; INVOLVED IN: chromatin assembly or disassembly, transcription initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Resolvase, RNase H-like fold (InterPro:IPR006641), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), S1, RNA binding (InterPro:IPR003029), Transcription elongation factor Spt6 (InterPro:IPR017072); BEST Arabidopsis thaliana protein match is: RNA binding / hydrolase, acting on ester bonds / protein binding / transcription elongation regulator (TAIR:AT1G63210.1); Has 55813 Blast hits to 27880 proteins in 1661 species: Archae - 98; Bacteria - 10191; Metazoa - 18451; Fungi - 6317; Plants - 4588; Viruses - 709; Other Eukaryotes - 15459 (source: NCBI BLink).  protein_id AT1G65440.2p  transcript_id AT1G65440.2  protein_id AT1G65440.2p  transcript_id AT1G65440.2  
At1g65445	chr1:024315875	0.0	W/24315875-24316336,24316453-24316491	AT1G65445.1  CDS  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product transferase-related  note transferase-related; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HCT (HYDROXYCINNAMOYL-COA SHIKIMATE/QUINATE HYDROXYCINNAMOYL TRANSFERASE); quinate O-hydroxycinnamoyltransferase/ shikimate O-hydroxycinnamoyltransferase/ transferase (TAIR:AT5G48930.1); Has 438 Blast hits to 437 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 435; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G65445.1p  transcript_id AT1G65445.1  protein_id AT1G65445.1p  transcript_id AT1G65445.1  
At1g65450	chr1:024318035	0.0	W/24318035-24318895	AT1G65450.1  CDS  gene_syn T8F5.23, T8F5_23  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT5G41040.2); Has 1007 Blast hits to 1007 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 24; Plants - 983; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G65450.1p  transcript_id AT1G65450.1  protein_id AT1G65450.1p  transcript_id AT1G65450.1  
At1g65470	chr1:024323421	0.0	C/24323421-24323879,24323198-24323297,24322969-24323116,24322763-24322886,24322267-24322631,24321880-24322185,24321277-24321358,24321063-24321200,24320385-24320798,24320173-24320310,24319906-24320079	AT1G65470.1  CDS  gene_syn FAS1, FASCIATA 1, NFB2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B  gene FAS1  function Chromatin Assembly Factor-1 (CAF-1) p150 subunit. Mutants have reduced heterochromatin content. In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively. Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis.  go_component chromatin assembly complex|GO:0005678|11163246|IPI  go_process double-strand break repair via homologous recombination|GO:0000724|17110925|IMP  go_process DNA recombination|GO:0006310|16980538|IEP  go_process DNA recombination|GO:0006310|17110925|IMP  go_process establishment or maintenance of chromatin architecture|GO:0006325|16980538|IDA  go_process nucleosome assembly|GO:0006334|11163246|IDA  go_process cell proliferation|GO:0008283|17021044|IMP  go_process pollen development|GO:0009555|18045841|IGI  go_process embryonic development|GO:0009790|11163246|IMP  go_process regulation of meristem organization|GO:0009934|11163246|IMP  go_process trichome differentiation|GO:0010026|17021044|IMP  go_process heterochromatin formation|GO:0031507|16452472|IMP  go_process positive regulation of cell cycle|GO:0045787|18045841|IGI  go_process leaf development|GO:0048366|17021044|IMP  go_function histone binding|GO:0042393|11163246|ISS  product FAS1 (FASCIATA 1); histone binding  note FASCIATA 1 (FAS1); FUNCTIONS IN: histone binding; INVOLVED IN: in 12 processes; LOCATED IN: chromatin assembly complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 54075 Blast hits to 31035 proteins in 1309 species: Archae - 211; Bacteria - 4904; Metazoa - 24246; Fungi - 3598; Plants - 1158; Viruses - 354; Other Eukaryotes - 19604 (source: NCBI BLink).  protein_id AT1G65470.1p  transcript_id AT1G65470.1  protein_id AT1G65470.1p  transcript_id AT1G65470.1  
At1g65480	chr1:024331510	0.0	W/24331510-24331710,24332526-24332587,24333301-24333341,24333466-24333689	AT1G65480.1  CDS  gene_syn F5I14.3, F5I14_3, FLOWERING LOCUS T, FT  gene FT  function FT, together with LFY, promotes flowering and is antagonistic with its homologous gene, TERMINAL FLOWER1 (TFL1). FT is expressed in leaves and is induced by long day treatment. Either the FT mRNA or protein is translocated to the shoot apex where it induces its own expression. Recent data suggests that FT protein acts as a long-range signal. FT is a target of CO and acts upstream of SOC1.  go_component nucleus|GO:0005634|16099979|IDA  go_component cytoplasm|GO:0005737|16099979|IDA  go_process positive regulation of flower development|GO:0009911|10583960|IMP  go_process positive regulation of flower development|GO:0009911|10583961|IMP  go_process photoperiodism, flowering|GO:0048573|17446353|IEP  go_function protein binding|GO:0005515|16099980|IPI  go_function phosphatidylethanolamine binding|GO:0008429|10583961|ISS  product FT (FLOWERING LOCUS T); phosphatidylethanolamine binding / protein binding  note FLOWERING LOCUS T (FT); FUNCTIONS IN: phosphatidylethanolamine binding, protein binding; INVOLVED IN: photoperiodism, flowering, positive regulation of flower development; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylethanolamine-binding, conserved site (InterPro:IPR001858), Phosphatidylethanolamine-binding protein PEBP (InterPro:IPR008914); BEST Arabidopsis thaliana protein match is: TSF (TWIN SISTER OF FT); phosphatidylethanolamine binding (TAIR:AT4G20370.1); Has 1318 Blast hits to 1316 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 545; Fungi - 88; Plants - 658; Viruses - 3; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT1G65480.1p  transcript_id AT1G65480.1  protein_id AT1G65480.1p  transcript_id AT1G65480.1  
At1g65481	chr1:024341026	0.0	C/24341026-24341578	AT1G65481.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G65481.1  
At1g65483	chr1:024343144	0.0	W/24343144-24343296,24343364-24343441	AT1G65483.1  CDS  product unknown protein  note unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G65483.1p  transcript_id AT1G65483.1  protein_id AT1G65483.1p  transcript_id AT1G65483.1  
At1g65483	chr1:024343144	0.0	W/24343144-24343296,24343364-24343441	AT1G65483.2  CDS  product unknown protein  note unknown protein.  protein_id AT1G65483.2p  transcript_id AT1G65483.2  protein_id AT1G65483.2p  transcript_id AT1G65483.2  
At1g65485	chr1:024346724	0.0	W/24346724-24347264	AT1G65485.1  mRNA_TE_gene  pseudo  gene_syn F5I14.22  note Transposable element gene, pseudogene, similar to SAE1-S9-protein, blastp match of 45% identity and 1.4e-12 P-value to GP|4760708|dbj|BAA77394.1||AB012866 SAE1-S9-protein {Brassica rapa}  
At1g65484	chr1:024347792	0.0	W/24347792-24347897,24348122-24348258	AT1G65484.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G65484.1p  transcript_id AT1G65484.1  protein_id AT1G65484.1p  transcript_id AT1G65484.1  
At1g65486	chr1:024349523	0.0	W/24349523-24349631,24349964-24350121	AT1G65486.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65500.1); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G65486.1p  transcript_id AT1G65486.1  protein_id AT1G65486.1p  transcript_id AT1G65486.1  
At1g65486	chr1:024349843	0.0	W/24349843-24349870,24349964-24350121	AT1G65486.2  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast.  protein_id AT1G65486.2p  transcript_id AT1G65486.2  protein_id AT1G65486.2p  transcript_id AT1G65486.2  
At1g65490	chr1:024354792	0.0	W/24354792-24354900,24355018-24355175	AT1G65490.1  CDS  gene_syn F5I14.26  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65486.1); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G65490.1p  transcript_id AT1G65490.1  protein_id AT1G65490.1p  transcript_id AT1G65490.1  
At1g65500	chr1:024357887	0.0	W/24357887-24357995,24358224-24358375	AT1G65500.1  CDS  gene_syn F5I14.4, F5I14_4  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65486.1); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G65500.1p  transcript_id AT1G65500.1  protein_id AT1G65500.1p  transcript_id AT1G65500.1  
At1g65510	chr1:024359456	0.0	W/24359456-24359567,24359717-24359847	AT1G65510.1  CDS  gene_syn F5I14.24, F5I14_24  go_component endomembrane system|GO:0012505||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65490.1); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G65510.1p  transcript_id AT1G65510.1  protein_id AT1G65510.1p  transcript_id AT1G65510.1  
At1g65520	chr1:024361171	0.0	C/24361171-24361893	AT1G65520.1  CDS  gene_syn ARABIDOPSIS THALIANA DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 1, ATECI1, DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 1, ECHIC, ECI1, ENOYL-COA HYDRATASE/ISOMERASE C, F5I14.5, F5I14_5, PEC11  gene ECI1  function encodes a peroxisomal delta3, delta2-enoyl CoA isomerase, involved in unsaturated fatty acid degradation  go_component peroxisome|GO:0005777|17951448|IDA  go_process metabolic process|GO:0008152||ISS  go_process fatty acid catabolic process|GO:0009062|18657232|IMP  go_function catalytic activity|GO:0003824||ISS  go_function dodecenoyl-CoA delta-isomerase activity|GO:0004165|18657232|IGI  go_function carnitine racemase activity|GO:0008809||ISS  product ECI1 (DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 1); carnitine racemase/ catalytic/ dodecenoyl-CoA delta-isomerase  note DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 1 (ECI1); FUNCTIONS IN: dodecenoyl-CoA delta-isomerase activity, catalytic activity, carnitine racemase activity; INVOLVED IN: fatty acid catabolic process, metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: IBR10 (INDOLE-3-BUTYRIC ACID RESPONSE 10); catalytic/ dodecenoyl-CoA delta-isomerase (TAIR:AT4G14430.1); Has 4765 Blast hits to 4765 proteins in 786 species: Archae - 66; Bacteria - 2772; Metazoa - 523; Fungi - 114; Plants - 101; Viruses - 0; Other Eukaryotes - 1189 (source: NCBI BLink).  protein_id AT1G65520.1p  transcript_id AT1G65520.1  protein_id AT1G65520.1p  transcript_id AT1G65520.1  
At1g65540	chr1:024365494	0.0	C/24365494-24366011,24365098-24365410,24364786-24364932,24364613-24364701,24364431-24364523,24364143-24364269,24363909-24363973,24363641-24363815,24363300-24363494,24363150-24363197,24362911-24363057,24362744-24362826,24362549-24362664,24362382-24362476	AT1G65540.1  CDS  gene_syn F5I14.7, F5I14_7  go_function calcium ion binding|GO:0005509||IEA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), LETM1-like (InterPro:IPR011685); BEST Arabidopsis thaliana protein match is: calcium-binding mitochondrial protein-related (TAIR:AT3G59820.1); Has 5986 Blast hits to 5091 proteins in 515 species: Archae - 39; Bacteria - 659; Metazoa - 2946; Fungi - 435; Plants - 306; Viruses - 24; Other Eukaryotes - 1577 (source: NCBI BLink).  protein_id AT1G65540.1p  transcript_id AT1G65540.1  protein_id AT1G65540.1p  transcript_id AT1G65540.1  
At1g65541	chr1:024366310	0.0	W/24366310-24366405	AT1G65541.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G65541.1p  transcript_id AT1G65541.1  protein_id AT1G65541.1p  transcript_id AT1G65541.1  
At1g65550	chr1:024370680	0.0	C/24370680-24370800,24370487-24370584,24370172-24370348,24369983-24370083,24369814-24369889,24369634-24369693,24369250-24369455,24369052-24369148,24368859-24368945,24368696-24368754,24368471-24368562,24368275-24368352,24368018-24368172,24367694-24367912	AT1G65550.1  CDS  gene_syn F5I14.8, F5I14_8  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_function transmembrane transporter activity|GO:0022857||ISS  product xanthine/uracil permease family protein  note xanthine/uracil permease family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Xanthine/uracil permease (InterPro:IPR006042), Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: xanthine/uracil permease family protein (TAIR:AT5G25420.1); Has 4550 Blast hits to 4517 proteins in 912 species: Archae - 37; Bacteria - 3216; Metazoa - 303; Fungi - 82; Plants - 293; Viruses - 1; Other Eukaryotes - 618 (source: NCBI BLink).  protein_id AT1G65550.1p  transcript_id AT1G65550.1  protein_id AT1G65550.1p  transcript_id AT1G65550.1  
At1g65560	chr1:024373440	0.0	C/24373440-24373673,24372748-24372934,24372497-24372663,24372336-24372418,24371608-24371989	AT1G65560.1  CDS  gene_syn F5I14.9, F5I14_9  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  product allyl alcohol dehydrogenase, putative  note allyl alcohol dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, binding, zinc ion binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: AT-AER (alkenal reductase); 2-alkenal reductase (TAIR:AT5G16970.1); Has 11483 Blast hits to 11470 proteins in 1022 species: Archae - 66; Bacteria - 5293; Metazoa - 741; Fungi - 668; Plants - 293; Viruses - 0; Other Eukaryotes - 4422 (source: NCBI BLink).  protein_id AT1G65560.1p  transcript_id AT1G65560.1  protein_id AT1G65560.1p  transcript_id AT1G65560.1  
At1g65570	chr1:024375391	0.0	C/24375391-24375846,24374526-24375044,24374098-24374316	AT1G65570.1  CDS  gene_syn F5I14.10, F5I14_10  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product polygalacturonase, putative / pectinase, putative  note polygalacturonase, putative / pectinase, putative; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: polygalacturonase, putative / pectinase, putative (TAIR:AT3G59850.1); Has 2331 Blast hits to 2325 proteins in 287 species: Archae - 2; Bacteria - 388; Metazoa - 8; Fungi - 989; Plants - 876; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT1G65570.1p  transcript_id AT1G65570.1  protein_id AT1G65570.1p  transcript_id AT1G65570.1  
At1g65580	chr1:024383226	0.0	C/24383226-24383940,24382533-24382788,24381498-24382305,24381045-24381169,24380543-24380627,24380201-24380366,24380058-24380098,24379695-24379962,24379119-24379242,24378127-24378487,24377598-24377954	AT1G65580.1  CDS  gene_syn F5I14.11, F5I14_11, FRA3, FRAGILE FIBER3  gene FRA3  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437||IEA  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437||ISS  product FRA3 (FRAGILE FIBER3); inositol or phosphatidylinositol phosphatase  note FRAGILE FIBER3 (FRA3); FUNCTIONS IN: inositol or phosphatidylinositol phosphatase activity; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: inositol or phosphatidylinositol phosphatase/ inositol-polyphosphate 5-phosphatase (TAIR:AT2G43900.1); Has 1723 Blast hits to 1669 proteins in 197 species: Archae - 0; Bacteria - 108; Metazoa - 722; Fungi - 378; Plants - 276; Viruses - 0; Other Eukaryotes - 239 (source: NCBI BLink).  protein_id AT1G65580.1p  transcript_id AT1G65580.1  protein_id AT1G65580.1p  transcript_id AT1G65580.1  
At1g65585	chr1:024384343	0.0	W/24384343-24385178	AT1G65585.1  pseudogenic_transcript  pseudo  gene_syn F5I14.25  note pseudogene, similar to oj991113_30.20, blastp match of 25% identity and 8.9e-08 P-value to GP|21741715|emb|CAD41338.1||AL662946 oj991113_30.20 {Oryza sativa (japonica cultivar-group)}  
At1g65590	chr1:024385996	0.0	W/24385996-24386340,24388184-24388258,24388836-24388871,24388962-24389073,24389156-24389226,24389320-24389450,24389545-24389610,24389707-24389807,24389889-24389948,24390026-24390059,24390135-24390233,24390328-24390387,24390471-24390721,24390823-24390989	AT1G65590.1  CDS  gene_syn ATHEX1, BETA-HEXOSAMINIDASE 3, F5I14.12, F5I14_12, HEXO3  gene HEXO3  function Encodes a protein with beta-hexosaminidase activity. Located on the plasma membrane.  go_component cell wall|GO:0005618|15593128|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_component plasma membrane|GO:0005886|17644627|IDA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function beta-N-acetylhexosaminidase activity|GO:0004563|17644627|IDA  go_function beta-N-acetylhexosaminidase activity|GO:0004563||ISS  go_function hexosaminidase activity|GO:0015929|17636254|IDA  product HEXO3 (BETA-HEXOSAMINIDASE 3); beta-N-acetylhexosaminidase/ hexosaminidase  note BETA-HEXOSAMINIDASE 3 (HEXO3); FUNCTIONS IN: hexosaminidase activity, beta-N-acetylhexosaminidase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 20, catalytic core (InterPro:IPR015883), Beta-N-acetylhexosaminidase-like (InterPro:IPR015882), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 20 (InterPro:IPR001540), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: HEXO1 (BETA-HEXOSAMINIDASE 1); beta-N-acetylhexosaminidase/ hexosaminidase/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT3G55260.1); Has 2245 Blast hits to 2201 proteins in 429 species: Archae - 4; Bacteria - 1141; Metazoa - 401; Fungi - 134; Plants - 61; Viruses - 0; Other Eukaryotes - 504 (source: NCBI BLink).  protein_id AT1G65590.1p  transcript_id AT1G65590.1  protein_id AT1G65590.1p  transcript_id AT1G65590.1  
At1g65610	chr1:024394865	0.0	C/24394865-24395261,24393333-24393634,24392558-24393155,24392299-24392471,24391823-24392224	AT1G65610.1  CDS  gene_syn ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, ATGH9A2, F5I14.14, F5I14_14, KOR2  gene KOR2  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product KOR2; catalytic/ hydrolase, hydrolyzing O-glycosyl compounds  note KOR2; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, sepal, root, stamen, leaf; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1); cellulase/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT5G49720.1); Has 1038 Blast hits to 1028 proteins in 172 species: Archae - 0; Bacteria - 252; Metazoa - 132; Fungi - 14; Plants - 613; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT1G65610.1p  transcript_id AT1G65610.1  protein_id AT1G65610.1p  transcript_id AT1G65610.1  
At1g65620	chr1:024400146	0.0	W/24400146-24400745	AT1G65620.1  CDS  gene_syn AS2, ASYMMETRIC LEAVES 2, F5I14.15, F5I14_15  gene AS2  function required for formation of a symmetric flat leaf lamina, encodes a member of a family of proteins characterized by cysteine repeats and a leucine zipper; involved in KNOX gene regulation. Acts together with ASL1 in proximal-distal symmetry determination. Forms a complex with AS1 that binds to the BP promoter and leads to silencing of BP.  go_component nucleus|GO:0005634|17293570|IDA  go_process determination of symmetry|GO:0009799|11311158|IMP  go_process adaxial/abaxial axis specification|GO:0009943|18849474|IMP  go_process polarity specification of adaxial/abaxial axis|GO:0009944|17293570|IMP  go_process proximal/distal pattern formation|GO:0009954|15821980|IGI  go_process leaf vascular tissue pattern formation|GO:0010305|17559509|IEP  go_process petal development|GO:0048441|15821980|IGI  go_function protein binding|GO:0005515|16243907|IPI  product AS2 (ASYMMETRIC LEAVES 2); protein binding  note ASYMMETRIC LEAVES 2 (AS2); FUNCTIONS IN: protein binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: ASL1 (TAIR:AT5G66870.1); Has 565 Blast hits to 562 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 565; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G65620.1p  transcript_id AT1G65620.1  protein_id AT1G65620.1p  transcript_id AT1G65620.1  
At1g65620	chr1:024400146	0.0	W/24400146-24400745	AT1G65620.2  CDS  gene_syn AS2, ASYMMETRIC LEAVES 2, F5I14.15, F5I14_15  gene AS2  function required for formation of a symmetric flat leaf lamina, encodes a member of a family of proteins characterized by cysteine repeats and a leucine zipper; involved in KNOX gene regulation. Acts together with ASL1 in proximal-distal symmetry determination. Forms a complex with AS1 that binds to the BP promoter and leads to silencing of BP.  go_component nucleus|GO:0005634|17293570|IDA  go_process determination of symmetry|GO:0009799|11311158|IMP  go_process adaxial/abaxial axis specification|GO:0009943|18849474|IMP  go_process polarity specification of adaxial/abaxial axis|GO:0009944|17293570|IMP  go_process proximal/distal pattern formation|GO:0009954|15821980|IGI  go_process leaf vascular tissue pattern formation|GO:0010305|17559509|IEP  go_process petal development|GO:0048441|15821980|IGI  go_function protein binding|GO:0005515|16243907|IPI  product AS2 (ASYMMETRIC LEAVES 2); protein binding  note ASYMMETRIC LEAVES 2 (AS2); FUNCTIONS IN: protein binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: ASL1 (TAIR:AT5G66870.1); Has 565 Blast hits to 562 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 565; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G65620.2p  transcript_id AT1G65620.2  protein_id AT1G65620.2p  transcript_id AT1G65620.2  
At1g65620	chr1:024400146	0.0	W/24400146-24400745	AT1G65620.3  CDS  gene_syn AS2, ASYMMETRIC LEAVES 2, F5I14.15, F5I14_15  gene AS2  function required for formation of a symmetric flat leaf lamina, encodes a member of a family of proteins characterized by cysteine repeats and a leucine zipper; involved in KNOX gene regulation. Acts together with ASL1 in proximal-distal symmetry determination. Forms a complex with AS1 that binds to the BP promoter and leads to silencing of BP.  go_component nucleus|GO:0005634|17293570|IDA  go_process determination of symmetry|GO:0009799|11311158|IMP  go_process adaxial/abaxial axis specification|GO:0009943|18849474|IMP  go_process polarity specification of adaxial/abaxial axis|GO:0009944|17293570|IMP  go_process proximal/distal pattern formation|GO:0009954|15821980|IGI  go_process leaf vascular tissue pattern formation|GO:0010305|17559509|IEP  go_process petal development|GO:0048441|15821980|IGI  go_function protein binding|GO:0005515|16243907|IPI  product AS2 (ASYMMETRIC LEAVES 2); protein binding  note ASYMMETRIC LEAVES 2 (AS2); FUNCTIONS IN: protein binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: ASL1 (TAIR:AT5G66870.1); Has 565 Blast hits to 562 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 565; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G65620.3p  transcript_id AT1G65620.3  protein_id AT1G65620.3p  transcript_id AT1G65620.3  
At1g65620	chr1:024400146	0.0	W/24400146-24400745	AT1G65620.4  CDS  gene_syn AS2, ASYMMETRIC LEAVES 2, F5I14.15, F5I14_15  gene AS2  function required for formation of a symmetric flat leaf lamina, encodes a member of a family of proteins characterized by cysteine repeats and a leucine zipper; involved in KNOX gene regulation. Acts together with ASL1 in proximal-distal symmetry determination. Forms a complex with AS1 that binds to the BP promoter and leads to silencing of BP.  go_component nucleus|GO:0005634|17293570|IDA  go_process determination of symmetry|GO:0009799|11311158|IMP  go_process adaxial/abaxial axis specification|GO:0009943|18849474|IMP  go_process polarity specification of adaxial/abaxial axis|GO:0009944|17293570|IMP  go_process proximal/distal pattern formation|GO:0009954|15821980|IGI  go_process leaf vascular tissue pattern formation|GO:0010305|17559509|IEP  go_process petal development|GO:0048441|15821980|IGI  go_function protein binding|GO:0005515|16243907|IPI  product AS2 (ASYMMETRIC LEAVES 2); protein binding  note ASYMMETRIC LEAVES 2 (AS2); FUNCTIONS IN: protein binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: ASL1 (TAIR:AT5G66870.1); Has 565 Blast hits to 562 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 565; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G65620.4p  transcript_id AT1G65620.4  protein_id AT1G65620.4p  transcript_id AT1G65620.4  
At1g65630	chr1:024408696	0.0	C/24408696-24409068,24408347-24408592,24407911-24408106,24407516-24407775,24407320-24407447,24407037-24407210,24406903-24406953,24406542-24406793	AT1G65630.1  CDS  gene_syn DegP protease 3, DegP3, F1E22.1  gene DegP3  function Encodes a putative DegP protease.  go_component mitochondrion|GO:0005739||IEA  go_process proteolysis|GO:0006508||IEA  go_function catalytic activity|GO:0003824||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function protein binding|GO:0005515||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type peptidase activity|GO:0008236||ISS  product DegP3 (DegP protease 3); catalytic/ protein binding / serine-type endopeptidase/ serine-type peptidase  note DegP protease 3 (DegP3); FUNCTIONS IN: serine-type peptidase activity, protein binding, catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, stamen, leaf; EXPRESSED DURING: LP.06 six leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Serine endopeptidase DegP2 (InterPro:IPR015724), Peptidase, trypsin-like serine and cysteine (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1 and S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DegP10 (DegP protease 10); catalytic/ protein binding / serine-type endopeptidase/ serine-type peptidase (TAIR:AT5G36950.1); Has 9225 Blast hits to 9219 proteins in 1357 species: Archae - 52; Bacteria - 5527; Metazoa - 225; Fungi - 14; Plants - 185; Viruses - 0; Other Eukaryotes - 3222 (source: NCBI BLink).  protein_id AT1G65630.1p  transcript_id AT1G65630.1  protein_id AT1G65630.1p  transcript_id AT1G65630.1  
At1g65640	chr1:024413221	0.0	C/24413221-24413527,24412886-24413131,24412610-24412805,24412200-24412459,24411984-24412111,24411695-24411868	AT1G65640.1  CDS  gene_syn DegP protease 4, DegP4, F1E22.2  gene DegP4  function Encodes a putative DegP protease.  go_component mitochondrion|GO:0005739||IEA  go_process proteolysis|GO:0006508||IEA  go_function catalytic activity|GO:0003824||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function protein binding|GO:0005515||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type peptidase activity|GO:0008236||ISS  product DegP4 (DegP protease 4); catalytic/ protein binding / serine-type endopeptidase/ serine-type peptidase  note DegP protease 4 (DegP4); FUNCTIONS IN: serine-type peptidase activity, protein binding, catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Serine endopeptidase DegP2 (InterPro:IPR015724), Peptidase, trypsin-like serine and cysteine (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1 and S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DegP10 (DegP protease 10); catalytic/ protein binding / serine-type endopeptidase/ serine-type peptidase (TAIR:AT5G36950.1); Has 8789 Blast hits to 8786 proteins in 1349 species: Archae - 52; Bacteria - 5493; Metazoa - 210; Fungi - 2; Plants - 178; Viruses - 0; Other Eukaryotes - 2854 (source: NCBI BLink).  protein_id AT1G65640.1p  transcript_id AT1G65640.1  protein_id AT1G65640.1p  transcript_id AT1G65640.1  
At1g65642	chr1:024413931	0.0	C/24413931-24414970	AT1G65642.1  pseudogenic_transcript  pseudo  function pseudogene of F-box family protein  
At1g65650	chr1:024417436	0.0	C/24417436-24417466,24416827-24416873,24416294-24416340,24416019-24416121,24415172-24415936	AT1G65650.1  CDS  gene_syn F1E22.3, UBIQUITIN C-TERMINAL HYDROLASE 2, UCH2  gene UCH2  go_component intracellular|GO:0005622||ISS  go_component nucleus|GO:0005634|17559514|IDA  go_component cytoplasm|GO:0005737|17559514|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_process shoot morphogenesis|GO:0010016|17559514|IGI  go_process protein deubiquitination|GO:0016579|17559514|IDA  go_process leaf development|GO:0048366|17559514|IGI  go_process shoot development|GO:0048367|17559514|IGI  go_function ubiquitin thiolesterase activity|GO:0004221||ISS  go_function ubiquitin-specific protease activity|GO:0004843|17559514|IDA  product UCH2; ubiquitin thiolesterase/ ubiquitin-specific protease  note UCH2; FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: protein deubiquitination, shoot development, shoot morphogenesis, leaf development, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus, intracellular, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (InterPro:IPR001578), Ubiquitinyl hydrolase, UCH37 type (InterPro:IPR017390); BEST Arabidopsis thaliana protein match is: UCH1; ubiquitin thiolesterase (TAIR:AT5G16310.1); Has 910 Blast hits to 903 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 511; Fungi - 215; Plants - 72; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).  protein_id AT1G65650.1p  transcript_id AT1G65650.1  protein_id AT1G65650.1p  transcript_id AT1G65650.1  
At1g65660	chr1:024421216	0.0	C/24421216-24421231,24420626-24420789,24420420-24420532,24419850-24420263,24419606-24419741,24419212-24419511,24418870-24419086,24418623-24418726,24418467-24418535,24418295-24418369	AT1G65660.1  CDS  gene_syn F1E22.4, F1E22_4, SMP1, SWELLMAP 1  gene SMP1  function Encodes a CCHC zinc finger protein that may function as a step II splicing factor. In an epigenetic allele of SMP1 (in which SMP1 and SMP2 mRNA is reduced) organs are smaller and contain fewer cells.  go_component cellular_component|GO:0005575||ND  go_process positive regulation of cell proliferation|GO:0008284|15937226|IMP  go_process RNA splicing|GO:0008380|15937226|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function single-stranded RNA binding|GO:0003727|15937226|TAS  product SMP1 (SWELLMAP 1); nucleic acid binding / single-stranded RNA binding  note SWELLMAP 1 (SMP1); FUNCTIONS IN: single-stranded RNA binding, nucleic acid binding; INVOLVED IN: positive regulation of cell proliferation, RNA splicing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: SMP2; single-stranded RNA binding (TAIR:AT4G37120.1); Has 399 Blast hits to 388 proteins in 139 species: Archae - 0; Bacteria - 4; Metazoa - 123; Fungi - 102; Plants - 35; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).  protein_id AT1G65660.1p  transcript_id AT1G65660.1  protein_id AT1G65660.1p  transcript_id AT1G65660.1  
At1g65670	chr1:024423745	0.0	C/24423745-24423953,24423341-24423656,24423098-24423247,24422688-24423014,24422433-24422615,24422226-24422353,24421993-24422128	AT1G65670.1  CDS  gene_syn CYP702A1, F1E22.5  gene CYP702A1  function a member of the cytochrome P450 gene family. molecular function unknown.  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP702A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP702A1; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP702A2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G15300.1); Has 17061 Blast hits to 17024 proteins in 979 species: Archae - 30; Bacteria - 1706; Metazoa - 8555; Fungi - 2335; Plants - 3793; Viruses - 3; Other Eukaryotes - 639 (source: NCBI BLink).  protein_id AT1G65670.1p  transcript_id AT1G65670.1  protein_id AT1G65670.1p  transcript_id AT1G65670.1  
At1g65680	chr1:024427266	0.0	W/24427266-24427458,24427570-24427682,24427767-24427954,24428072-24428399	AT1G65680.1  CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN B2, ATEXPB2, ATHEXP BETA 1.4, EXPANSIN B2, EXPB2, F1E22.6  gene ATEXPB2  function member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828||ISS  go_process plant-type cell wall modification during multidimensional cell growth|GO:0009831||ISS  product ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2)  note ARABIDOPSIS THALIANA EXPANSIN B2 (ATEXPB2); INVOLVED IN: plant-type cell wall modification during multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: ATEXPB4 (ARABIDOPSIS THALIANA EXPANSIN B4) (TAIR:AT2G45110.1); Has 1473 Blast hits to 1469 proteins in 129 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 20; Plants - 1418; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT1G65680.1p  transcript_id AT1G65680.1  protein_id AT1G65680.1p  transcript_id AT1G65680.1  
At1g65681	chr1:024428875	0.0	W/24428875-24428901,24429317-24429335,24429461-24429567,24429944-24430137,24430346-24430670	AT1G65681.1  CDS  go_component extracellular region|GO:0005576||IEA  go_process sexual reproduction|GO:0019953||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: sexual reproduction; LOCATED IN: extracellular region; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: ATEXPB4 (ARABIDOPSIS THALIANA EXPANSIN B4) (TAIR:AT2G45110.1); Has 1362 Blast hits to 1361 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 20; Plants - 1323; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT1G65681.1p  transcript_id AT1G65681.1  protein_id AT1G65681.1p  transcript_id AT1G65681.1  
At1g65690	chr1:024432436	0.0	C/24432436-24432898,24431642-24431937	AT1G65690.1  CDS  gene_syn F1E22.7, F1E22_7  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product harpin-induced protein-related / HIN1-related / harpin-responsive protein-related  note harpin-induced protein-related / HIN1-related / harpin-responsive protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: NHL25 (NDR1/HIN1-LIKE 25) (TAIR:AT5G36970.1); Has 658 Blast hits to 657 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 658; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G65690.1p  transcript_id AT1G65690.1  protein_id AT1G65690.1p  transcript_id AT1G65690.1  
At1g65700	chr1:024435834	0.0	C/24435834-24435870,24435698-24435738,24435530-24435604,24434645-24434697,24434463-24434553	AT1G65700.1  CDS  gene_syn F1E22.8, F1E22_8  go_component nucleus|GO:0005634||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative  note small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative (TAIR:AT1G19120.1); Has 675 Blast hits to 674 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 308; Fungi - 214; Plants - 74; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT1G65700.1p  transcript_id AT1G65700.1  protein_id AT1G65700.1p  transcript_id AT1G65700.1  
At1g65700	chr1:024435834	0.0	C/24435834-24435870,24435698-24435738,24435530-24435604,24434645-24434697,24434463-24434553	AT1G65700.2  CDS  gene_syn F1E22.8, F1E22_8  go_component nucleus|GO:0005634||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative  note small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative (TAIR:AT1G19120.1); Has 675 Blast hits to 674 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 308; Fungi - 214; Plants - 74; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT1G65700.2p  transcript_id AT1G65700.2  protein_id AT1G65700.2p  transcript_id AT1G65700.2  
At1g65710	chr1:024437057	0.0	C/24437057-24438424	AT1G65710.1  CDS  gene_syn F1E22.23  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  product unknown protein  note unknown protein; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G37010.1); Has 2090 Blast hits to 1644 proteins in 134 species: Archae - 0; Bacteria - 25; Metazoa - 1715; Fungi - 81; Plants - 49; Viruses - 17; Other Eukaryotes - 203 (source: NCBI BLink).  protein_id AT1G65710.1p  transcript_id AT1G65710.1  protein_id AT1G65710.1p  transcript_id AT1G65710.1  
At1g65720	chr1:024440471	0.0	C/24440471-24441013	AT1G65720.1  CDS  gene_syn F1E22.9, F1E22_9  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 32 Blast hits to 32 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G65720.1p  transcript_id AT1G65720.1  protein_id AT1G65720.1p  transcript_id AT1G65720.1  
At1g65730	chr1:024442639	0.0	W/24442639-24443017,24444269-24444530,24444618-24444942,24445022-24446122	AT1G65730.1  CDS  gene_syn F1E22.10, F1E22_10, YELLOW STRIPE LIKE 7, YSL7  gene YSL7  function Arabidopsis thaliana metal-nicotianamine transporter YSL4  go_component plasma membrane|GO:0005886|17317660|IDA  go_process oligopeptide transport|GO:0006857||ISS  go_function oligopeptide transporter activity|GO:0015198||ISS  product YSL7 (YELLOW STRIPE LIKE 7); oligopeptide transporter  note YELLOW STRIPE LIKE 7 (YSL7); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: plasma membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: YSL5 (YELLOW STRIPE LIKE 5); oligopeptide transporter (TAIR:AT3G17650.1); Has 1027 Blast hits to 1007 proteins in 281 species: Archae - 12; Bacteria - 441; Metazoa - 0; Fungi - 157; Plants - 272; Viruses - 1; Other Eukaryotes - 144 (source: NCBI BLink).  protein_id AT1G65730.1p  transcript_id AT1G65730.1  protein_id AT1G65730.1p  transcript_id AT1G65730.1  
At1g65740	chr1:024452096	0.0	C/24452096-24453211	AT1G65740.1  CDS  gene_syn F1E22.11, F1E22_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G65760.1); Has 104 Blast hits to 99 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G65740.1p  transcript_id AT1G65740.1  protein_id AT1G65740.1p  transcript_id AT1G65740.1  
At1g65750	chr1:024454772	0.0	W/24454772-24458439	AT1G65750.1  mRNA_TE_gene  pseudo  gene_syn F1E22.22  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.9e-18 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)  
At1g65760	chr1:024458591	0.0	W/24458591-24459226,24459263-24459715	AT1G65760.1  CDS  gene_syn F1E22.12, F1E22_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, pollen tube, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G65740.1); Has 73 Blast hits to 71 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G65760.1p  transcript_id AT1G65760.1  protein_id AT1G65760.1p  transcript_id AT1G65760.1  
At1g65770	chr1:024460656	0.0	C/24460656-24461738	AT1G65770.1  CDS  gene_syn F1E22.13, F1E22_13  go_component cellular_component|GO:0005575||ND  product F-box family protein  note F-box family protein; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G65740.1); Has 161 Blast hits to 156 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 161; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G65770.1p  transcript_id AT1G65770.1  protein_id AT1G65770.1p  transcript_id AT1G65770.1  
At1g65780	chr1:024466793	0.0	C/24466793-24466888,24466156-24466701,24464899-24466080,24464492-24464822,24464152-24464413,24463891-24464074,24463379-24463737,24463152-24463295,24462958-24463051	AT1G65780.1  CDS  gene_syn F1E22.14, F1E22_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product tRNA-splicing endonuclease positive effector-related  note tRNA-splicing endonuclease positive effector-related; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: tRNA-splicing endonuclease positive effector-related (TAIR:AT1G65810.1); Has 3749 Blast hits to 3278 proteins in 513 species: Archae - 132; Bacteria - 669; Metazoa - 1136; Fungi - 756; Plants - 323; Viruses - 22; Other Eukaryotes - 711 (source: NCBI BLink).  protein_id AT1G65780.1p  transcript_id AT1G65780.1  protein_id AT1G65780.1p  transcript_id AT1G65780.1  
At1g65790	chr1:024468932	0.0	W/24468932-24470210,24470622-24470756,24470860-24471050,24471127-24471337,24471423-24471660,24471764-24471914,24472003-24472329	AT1G65790.1  CDS  gene_syn A. THALIANA RECEPTOR KINASE 1, ARK1, F1E22.15, F1E22_15  gene ARK1  function An alternatively spliced gene that encodes a functional transmembrane receptor serine/threonine kinase, alternate form may not have transmembrane domain.  go_component nucleus|GO:0005634|18552232|IDA  go_component membrane|GO:0016020||ISS  go_process protein amino acid phosphorylation|GO:0006468|18552232|IDA  go_process pollen-pistil interaction|GO:0009875||TAS  go_process protein amino acid autophosphorylation|GO:0046777|18552232|IDA  go_function protein kinase activity|GO:0004672|18552232|IDA  go_function protein serine/threonine kinase activity|GO:0004674|8811866|IDA  go_function kinase activity|GO:0016301||ISS  go_function transmembrane receptor protein kinase activity|GO:0019199||ISS  product ARK1 (A. THALIANA RECEPTOR KINASE 1); kinase/ protein kinase/ protein serine/threonine kinase/ transmembrane receptor protein kinase  note A. THALIANA RECEPTOR KINASE 1 (ARK1); FUNCTIONS IN: protein serine/threonine kinase activity, transmembrane receptor protein kinase activity, protein kinase activity, kinase activity; INVOLVED IN: pollen-pistil interaction, protein amino acid phosphorylation, protein amino acid autophosphorylation; LOCATED IN: nucleus, membrane; EXPRESSED IN: root, leaf; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), PAN-like, type 2 (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: ARK2 (A. THALIANA RECEPTOR KINASE 2); kinase/ protein kinase/ transmembrane receptor protein serine/threonine kinase (TAIR:AT1G65800.1); Has 88154 Blast hits to 86912 proteins in 3194 species: Archae - 52; Bacteria - 7684; Metazoa - 38179; Fungi - 6899; Plants - 19748; Viruses - 399; Other Eukaryotes - 15193 (source: NCBI BLink).  protein_id AT1G65790.1p  transcript_id AT1G65790.1  protein_id AT1G65790.1p  transcript_id AT1G65790.1  
At1g65800	chr1:024473166	0.0	W/24473166-24474456,24474826-24474960,24475054-24475244,24475321-24475531,24475617-24475854,24475958-24476108,24476197-24476523	AT1G65800.1  CDS  gene_syn A. THALIANA RECEPTOR KINASE 2, ARABIDOPSIS RECEPTOR KINASE 2, ARK2, F1E22.21, F1E22_21  gene ARK2  function encodes a putative receptor-like serine/threonine protein kinases that is similar to brassica self-incompatibility (S) locus. expressed in specifically in cotyledons, leaves, and sepals, in correlation with the maturation of these structures.  go_component cytosol|GO:0005829|18552232|IDA  go_process protein amino acid phosphorylation|GO:0006468|18552232|IDA  go_process cellular protein localization|GO:0034613|18552232|IGI  go_process protein amino acid autophosphorylation|GO:0046777|18552232|IDA  go_function protein kinase activity|GO:0004672|18552232|IDA  go_function transmembrane receptor protein serine/threonine kinase activity|GO:0004675|7866027|ISS  go_function kinase activity|GO:0016301||ISS  product ARK2 (A. THALIANA RECEPTOR KINASE 2); kinase/ protein kinase/ transmembrane receptor protein serine/threonine kinase  note A. THALIANA RECEPTOR KINASE 2 (ARK2); FUNCTIONS IN: protein kinase activity, transmembrane receptor protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation, protein amino acid autophosphorylation, cellular protein localization; LOCATED IN: cytosol; EXPRESSED IN: cotyledon, sepal, leaf; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), Apple-like (InterPro:IPR003609), PAN-like, type 2 (InterPro:IPR013227), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: ARK1 (A. THALIANA RECEPTOR KINASE 1); kinase/ protein kinase/ protein serine/threonine kinase/ transmembrane receptor protein kinase (TAIR:AT1G65790.1); Has 88133 Blast hits to 86905 proteins in 3195 species: Archae - 54; Bacteria - 7682; Metazoa - 38210; Fungi - 6847; Plants - 19758; Viruses - 392; Other Eukaryotes - 15190 (source: NCBI BLink).  protein_id AT1G65800.1p  transcript_id AT1G65800.1  protein_id AT1G65800.1p  transcript_id AT1G65800.1  
At1g65810	chr1:024480600	0.0	C/24480600-24480728,24479926-24480507,24478783-24479862,24478383-24478707,24478050-24478305,24477414-24477977,24477198-24477332,24477043-24477124	AT1G65810.1  CDS  gene_syn F1E22.16, F1E22_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product tRNA-splicing endonuclease positive effector-related  note tRNA-splicing endonuclease positive effector-related; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: seed; EXPRESSED DURING: E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: tRNA-splicing endonuclease positive effector-related (TAIR:AT1G65780.1); Has 4159 Blast hits to 3547 proteins in 602 species: Archae - 137; Bacteria - 864; Metazoa - 1176; Fungi - 781; Plants - 334; Viruses - 66; Other Eukaryotes - 801 (source: NCBI BLink).  protein_id AT1G65810.1p  transcript_id AT1G65810.1  protein_id AT1G65810.1p  transcript_id AT1G65810.1  
At1g65820	chr1:024485213	0.0	W/24485213-24485328,24485548-24485595,24485709-24485784,24485872-24486044,24486607-24486682	AT1G65820.2  CDS  gene_syn F1E22.17, F1E22_17  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function glutathione transferase activity|GO:0004364||ISS  product microsomal glutathione s-transferase, putative  note microsomal glutathione s-transferase, putative; FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Membrane-associated, eicosanoid and glutathione metabolism (MAPEG) (InterPro:IPR001129).  protein_id AT1G65820.2p  transcript_id AT1G65820.2  protein_id AT1G65820.2p  transcript_id AT1G65820.2  
At1g65820	chr1:024485213	0.0	W/24485213-24485328,24485709-24485784,24485872-24486044,24486303-24486415,24486512-24486542,24486607-24486682	AT1G65820.3  CDS  gene_syn F1E22.17, F1E22_17  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function glutathione transferase activity|GO:0004364||ISS  product microsomal glutathione s-transferase, putative  note microsomal glutathione s-transferase, putative; FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Membrane-associated, eicosanoid and glutathione metabolism (MAPEG) (InterPro:IPR001129).  protein_id AT1G65820.3p  transcript_id AT1G65820.3  protein_id AT1G65820.3p  transcript_id AT1G65820.3  
At1g65820	chr1:024485213	0.0	W/24485213-24485328,24485709-24485784,24485872-24486044,24486607-24486682	AT1G65820.1  CDS  gene_syn F1E22.17, F1E22_17  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function glutathione transferase activity|GO:0004364||ISS  product microsomal glutathione s-transferase, putative  note microsomal glutathione s-transferase, putative; FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, vacuole, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Membrane-associated, eicosanoid and glutathione metabolism (MAPEG) (InterPro:IPR001129); Has 251 Blast hits to 251 proteins in 88 species: Archae - 0; Bacteria - 5; Metazoa - 136; Fungi - 61; Plants - 31; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G65820.1p  transcript_id AT1G65820.1  protein_id AT1G65820.1p  transcript_id AT1G65820.1  
At1g65830	chr1:024486992	0.0	C/24486992-24487073	AT1G65830.1  tRNA  gene_syn 51295.TRNA-SER-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT1G65830.1  
At1g65840	chr1:024490173	0.0	W/24490173-24490215,24490431-24490546,24490646-24490734,24490904-24491017,24491252-24491339,24491427-24491512,24491606-24491806,24491886-24492318,24492405-24492728	AT1G65840.1  CDS  gene_syn ARABIDOPSIS THALIANA POLYAMINE OXIDASE 4, ATPAO4, F1E22.18, F1E22_18, PAO4, POLYAMINE OXIDASE 4  gene ATPAO4  function encodes a peroxisomal polyamine oxidase, involved in the back-conversion polyamine degradation pathway. Among the five polyamine oxidases in the Arabidopsis genome, PAO4 is the major isoform in root peroxisomes.  go_component peroxisome|GO:0005777|18703589|IDA  go_process polyamine catabolic process|GO:0006598|18703589|IMP  go_function amine oxidase activity|GO:0008131||ISS  go_function polyamine oxidase activity|GO:0046592|18703589|IDA  product ATPAO4 (ARABIDOPSIS THALIANA POLYAMINE OXIDASE 4); amine oxidase/ polyamine oxidase  note ARABIDOPSIS THALIANA POLYAMINE OXIDASE 4 (ATPAO4); FUNCTIONS IN: amine oxidase activity, polyamine oxidase activity; INVOLVED IN: polyamine catabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), Flavin-containing amine oxidase (InterPro:IPR001613); BEST Arabidopsis thaliana protein match is: ATPAO2 (Polyamine oxidase 2); amine oxidase/ electron carrier/ oxidoreductase (TAIR:AT2G43020.1); Has 5031 Blast hits to 4717 proteins in 736 species: Archae - 84; Bacteria - 1744; Metazoa - 1294; Fungi - 380; Plants - 371; Viruses - 0; Other Eukaryotes - 1158 (source: NCBI BLink).  protein_id AT1G65840.1p  transcript_id AT1G65840.1  protein_id AT1G65840.1p  transcript_id AT1G65840.1  
At1g65845	chr1:024493683	0.0	C/24493683-24493782,24493332-24493546	AT1G65845.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G65845.1p  transcript_id AT1G65845.1  protein_id AT1G65845.1p  transcript_id AT1G65845.1  
At1g65850	chr1:024494734	0.0	W/24494734-24494797,24494948-24495413,24495580-24496705,24496813-24497115,24497334-24498485	AT1G65850.1  CDS  gene_syn F12P19.1, F12P19_1  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G38340.1); Has 18741 Blast hits to 12949 proteins in 502 species: Archae - 18; Bacteria - 1197; Metazoa - 2543; Fungi - 98; Plants - 14101; Viruses - 2; Other Eukaryotes - 782 (source: NCBI BLink).  protein_id AT1G65850.1p  transcript_id AT1G65850.1  protein_id AT1G65850.1p  transcript_id AT1G65850.1  
At1g65860	chr1:024502135	0.0	C/24502135-24502678,24501618-24501688,24500357-24500512,24500146-24500228,24499898-24500033,24499640-24499813,24499210-24499425	AT1G65860.1  CDS  gene_syn F12P19.2, F12P19_2, FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 1, FMO GS-OX1  gene FMO GS-OX1  function belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates  go_component cellular_component|GO:0005575||ND  go_process glucosinolate biosynthetic process from homomethionine|GO:0033506|17461789|IMP  go_function monooxygenase activity|GO:0004497||ISS  go_function 3-methylthiopropyl glucosinolate S-oxygenase activity|GO:0080102|17461789|IMP  go_function 4-methylthiopropyl glucosinolate S-oxygenase activity|GO:0080103|17461789|IDA  go_function 4-methylthiopropyl glucosinolate S-oxygenase activity|GO:0080103|17461789|IMP  go_function 5-methylthiopropyl glucosinolate S-oxygenase activity|GO:0080104|17461789|IMP  go_function 6-methylthiopropyl glucosinolate S-oxygenase activity|GO:0080105|17461789|IMP  go_function 7-methylthiopropyl glucosinolate S-oxygenase activity|GO:0080106|17461789|IMP  go_function 8-methylthiopropyl glucosinolate S-oxygenase activity|GO:0080107|17461789|IDA  go_function 8-methylthiopropyl glucosinolate S-oxygenase activity|GO:0080107|17461789|IMP  product FMO GS-OX1 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 1); 3-methylthiopropyl glucosinolate S-oxygenase/ 4-methylthiopropyl glucosinolate S-oxygenase/ 5-methylthiopropyl glucosinolate S-oxygenase/ 6-methylthiopropyl glucosinolate S-oxygenase/ 7-methylthiopropyl glucosinolate S-oxygenase/ 8-methylthiopropyl glucosinolate S-oxygenase/ monooxygenase  note FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 1 (FMO GS-OX1); FUNCTIONS IN: in 7 functions; INVOLVED IN: glucosinolate biosynthetic process from homomethionine; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960); BEST Arabidopsis thaliana protein match is: FMO GS-OX2 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 2); 3-methylthiopropyl glucosinolate S-oxygenase/ 4-methylthiopropyl glucosinolate S-oxygenase/ 5-methylthiopropyl glucosinolate S-oxygenase/ 7-methylthiopropyl glucosinolate S-oxygenase/ 8-methylthiopropyl glucosinolate S-oxygenase/ flavin-containing monooxygenase/ monooxygenase (TAIR:AT1G62540.1); Has 9173 Blast hits to 8870 proteins in 1019 species: Archae - 18; Bacteria - 4129; Metazoa - 934; Fungi - 902; Plants - 416; Viruses - 0; Other Eukaryotes - 2774 (source: NCBI BLink).  protein_id AT1G65860.1p  transcript_id AT1G65860.1  protein_id AT1G65860.1p  transcript_id AT1G65860.1  
At1g65870	chr1:024503624	0.0	W/24503624-24504193	AT1G65870.1  CDS  gene_syn F12P19.3, F12P19_3  go_component cell wall|GO:0005618|15593128|IDA  go_process defense response|GO:0006952||ISS  go_process lignan biosynthetic process|GO:0009807||ISS  go_function molecular_function|GO:0003674||ND  product disease resistance-responsive family protein  note disease resistance-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lignan biosynthetic process, defense response; LOCATED IN: cell wall; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22900.1); Has 517 Blast hits to 516 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 517; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G65870.1p  transcript_id AT1G65870.1  protein_id AT1G65870.1p  transcript_id AT1G65870.1  
At1g65875	chr1:024504725	0.0	C/24504725-24506342	AT1G65875.1  pseudogenic_transcript  pseudo  gene_syn F12P19.4  note pseudogene, similar to EST AU070346(S12172) corresponds to a region of the predicted gene.~similar to AMP-binding protein. (X94625), blastp match of 57% identity and 4.5e-137 P-value to GP|6063549|dbj|BAA85409.1||AP000615 EST AU070346(S12172) corresponds to a region of the predicted gene.~similar to AMP-binding protein. (X94625) {Oryza sativa (japonica cultivar-group)}  
At1g65880	chr1:024510540	0.0	C/24510540-24510737,24509427-24510280,24508633-24509323	AT1G65880.1  CDS  gene_syn BENZOYLOXYGLUCOSINOLATE 1, BZO1, F12P19.5, F12P19_5  gene BZO1  function Encodes a benzoate-CoA ligase. Involved in the biosynthesis of benzoyloxyglucosinolate in Arabidopsis seeds.  go_component peroxisome|GO:0005777|17651367|ISS  go_process glucosinolate biosynthetic process|GO:0019761|17651367|IMP  go_function benzoate-CoA ligase activity|GO:0018858|17651367|IDA  product BZO1 (BENZOYLOXYGLUCOSINOLATE 1); benzoate-CoA ligase  note BENZOYLOXYGLUCOSINOLATE 1 (BZO1); FUNCTIONS IN: benzoate-CoA ligase activity; INVOLVED IN: glucosinolate biosynthetic process; LOCATED IN: peroxisome; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AAE12 (ACYL ACTIVATING ENZYME 12); catalytic (TAIR:AT1G65890.1); Has 50841 Blast hits to 47132 proteins in 2214 species: Archae - 548; Bacteria - 27545; Metazoa - 2834; Fungi - 2478; Plants - 1125; Viruses - 1; Other Eukaryotes - 16310 (source: NCBI BLink).  protein_id AT1G65880.1p  transcript_id AT1G65880.1  protein_id AT1G65880.1p  transcript_id AT1G65880.1  
At1g65890	chr1:024514414	0.0	C/24514414-24514611,24513425-24514278,24512598-24513282	AT1G65890.1  CDS  gene_syn AAE12, ACYL ACTIVATING ENZYME 12, F12P19.6, F12P19_6  gene AAE12  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  product AAE12 (ACYL ACTIVATING ENZYME 12); catalytic  note ACYL ACTIVATING ENZYME 12 (AAE12); FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: leaf apex, hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: BZO1 (BENZOYLOXYGLUCOSINOLATE 1); benzoate-CoA ligase (TAIR:AT1G65880.1); Has 50606 Blast hits to 47272 proteins in 2209 species: Archae - 544; Bacteria - 27379; Metazoa - 2844; Fungi - 2332; Plants - 1183; Viruses - 1; Other Eukaryotes - 16323 (source: NCBI BLink).  protein_id AT1G65890.1p  transcript_id AT1G65890.1  protein_id AT1G65890.1p  transcript_id AT1G65890.1  
At1g65900	chr1:024518116	0.0	C/24518116-24518325,24517921-24518023,24517809-24517834,24517457-24517669,24517285-24517356,24517105-24517197,24516930-24516971,24516734-24516838,24516480-24516645,24516287-24516396,24516023-24516109	AT1G65900.1  CDS  gene_syn F12P19.7, F12P19_7  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 170 Blast hits to 170 proteins in 66 species: Archae - 13; Bacteria - 127; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G65900.1p  transcript_id AT1G65900.1  protein_id AT1G65900.1p  transcript_id AT1G65900.1  
At1g65907	chr1:024520175	0.0	W/24520175-24520267	AT1G65907.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G65907.1p  transcript_id AT1G65907.1  protein_id AT1G65907.1p  transcript_id AT1G65907.1  
At1g65910	chr1:024523952	0.0	C/24523952-24524108,24522763-24523040,24522353-24522685,24521871-24522242,24521682-24521772,24520933-24521597	AT1G65910.1  CDS  gene_syn Arabidopsis NAC domain containing protein 28, F12P19.8, F12P19_8, anac028  gene anac028  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac028 (Arabidopsis NAC domain containing protein 28); transcription factor  note Arabidopsis NAC domain containing protein 28 (anac028); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac086 (Arabidopsis NAC domain containing protein 86); transcription factor (TAIR:AT5G17260.1); Has 1643 Blast hits to 1640 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1630; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G65910.1p  transcript_id AT1G65910.1  protein_id AT1G65910.1p  transcript_id AT1G65910.1  
At1g65920	chr1:024529151	0.0	C/24529151-24529204,24528721-24528807,24528555-24528644,24528386-24528472,24528107-24528301,24526120-24528030,24525888-24526034,24525444-24525805,24525267-24525354	AT1G65920.1  CDS  gene_syn F12P19.9, F12P19_9  go_component vacuole|GO:0005773|14760709|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function zinc ion binding|GO:0008270||IEA  product regulator of chromosome condensation (RCC1) family protein / zinc finger protein-related  note regulator of chromosome condensation (RCC1) family protein / zinc finger protein-related; FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Pleckstrin homology (InterPro:IPR001849), Zinc finger, FYVE-type (InterPro:IPR000306), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Zinc finger, FYVE-related (InterPro:IPR017455), Pleckstrin homology-type (InterPro:IPR011993), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Ran GTPase binding / chromatin binding / zinc ion binding (TAIR:AT5G12350.1); Has 15846 Blast hits to 6219 proteins in 328 species: Archae - 45; Bacteria - 1508; Metazoa - 7154; Fungi - 768; Plants - 1326; Viruses - 3; Other Eukaryotes - 5042 (source: NCBI BLink).  protein_id AT1G65920.1p  transcript_id AT1G65920.1  protein_id AT1G65920.1p  transcript_id AT1G65920.1  
At1g65930	chr1:024539088	0.0	W/24539088-24539136,24539492-24539535,24539619-24539728,24539827-24539864,24539948-24540025,24540107-24540160,24540239-24540340,24540472-24540557,24540648-24540751,24540854-24540922,24541015-24541130,24541223-24541257,24541363-24541505,24541582-24541704,24541780-24541861	AT1G65930.1  CDS  gene_syn F12P19.10, F12P19_10  go_component plasma membrane|GO:0005886|17644812|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function copper ion binding|GO:0005507|16526091|IDA  go_process metabolic process|GO:0008152||ISS  go_function isocitrate dehydrogenase (NADP+) activity|GO:0004450||ISS  product isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative  note isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative; FUNCTIONS IN: isocitrate dehydrogenase (NADP+) activity, copper ion binding; INVOLVED IN: response to cadmium ion, response to salt stress, metabolic process; LOCATED IN: apoplast, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804), Isocitrate dehydrogenase NADP-dependent, eukaryotic (InterPro:IPR004790); BEST Arabidopsis thaliana protein match is: ICDH (ISOCITRATE DEHYDROGENASE); isocitrate dehydrogenase (NADP+)/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor (TAIR:AT1G54340.1); Has 4101 Blast hits to 4085 proteins in 611 species: Archae - 17; Bacteria - 632; Metazoa - 448; Fungi - 160; Plants - 247; Viruses - 0; Other Eukaryotes - 2597 (source: NCBI BLink).  protein_id AT1G65930.1p  transcript_id AT1G65930.1  protein_id AT1G65930.1p  transcript_id AT1G65930.1  
At1g65940	chr1:024543652	0.0	W/24543652-24544101	AT1G65940.1  pseudogenic_transcript  pseudo  gene_syn F12P19.18, F12P19_18  note pseudogene, similar to Dof zinc finger protein, blastp match of 61% identity and 1.7e-10 P-value to GP|4996646|dbj|BAA78575.1||AB028132 Dof zinc finger protein {Oryza sativa}  
At1g65950	chr1:024550925	0.0	C/24550925-24551119,24550757-24550840,24550386-24550526,24550239-24550309,24550057-24550150,24549884-24549961,24549310-24549376,24549021-24549106,24548877-24548927,24548255-24548302,24547981-24548101,24547704-24547884,24547409-24547546,24547212-24547324,24547058-24547129,24546860-24546975	AT1G65950.1  CDS  gene_syn F12P19.11, F12P19_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ABC1 family protein  note ABC1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATATH9; transporter (TAIR:AT2G40090.1); Has 6963 Blast hits to 6948 proteins in 1101 species: Archae - 67; Bacteria - 2629; Metazoa - 363; Fungi - 316; Plants - 367; Viruses - 14; Other Eukaryotes - 3207 (source: NCBI BLink).  protein_id AT1G65950.1p  transcript_id AT1G65950.1  protein_id AT1G65950.1p  transcript_id AT1G65950.1  
At1g65960	chr1:024552094	0.0	W/24552094-24552176,24552266-24552470,24555769-24555969,24556047-24556515,24556607-24556659,24556780-24557253	AT1G65960.2  CDS  gene_syn F12P19.12, F12P19_12, GAD2, GLUTAMATE DECARBOXYLASE 2  gene GAD2  function glutamate decarboxylase (GAD2)  go_process glutamate metabolic process|GO:0006536|9700069|IDA  go_process glutamate metabolic process|GO:0006536|9701597|IDA  go_process nitrogen compound metabolic process|GO:0006807|9701597|TAS  go_function glutamate decarboxylase activity|GO:0004351|9700069|IDA  go_function glutamate decarboxylase activity|GO:0004351|9701597|IDA  go_function calmodulin binding|GO:0005516|11782485|TAS  product GAD2 (GLUTAMATE DECARBOXYLASE 2); calmodulin binding / glutamate decarboxylase  note GLUTAMATE DECARBOXYLASE 2 (GAD2); FUNCTIONS IN: calmodulin binding, glutamate decarboxylase activity; INVOLVED IN: nitrogen compound metabolic process, glutamate metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Glutamate decarboxylase (InterPro:IPR010107), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: GAD; calmodulin binding / glutamate decarboxylase (TAIR:AT5G17330.1); Has 1652 Blast hits to 1649 proteins in 488 species: Archae - 124; Bacteria - 816; Metazoa - 134; Fungi - 220; Plants - 188; Viruses - 4; Other Eukaryotes - 166 (source: NCBI BLink).  protein_id AT1G65960.2p  transcript_id AT1G65960.2  protein_id AT1G65960.2p  transcript_id AT1G65960.2  
At1g65960	chr1:024555868	0.0	W/24555868-24555969,24556047-24556515,24556607-24556659,24556780-24557253	AT1G65960.1  CDS  gene_syn F12P19.12, F12P19_12, GAD2, GLUTAMATE DECARBOXYLASE 2  gene GAD2  function glutamate decarboxylase (GAD2)  go_process glutamate metabolic process|GO:0006536|9700069|IDA  go_process glutamate metabolic process|GO:0006536|9701597|IDA  go_process nitrogen compound metabolic process|GO:0006807|9701597|TAS  go_function glutamate decarboxylase activity|GO:0004351|9700069|IDA  go_function glutamate decarboxylase activity|GO:0004351|9701597|IDA  go_function calmodulin binding|GO:0005516|11782485|TAS  product GAD2 (GLUTAMATE DECARBOXYLASE 2); calmodulin binding / glutamate decarboxylase  note GLUTAMATE DECARBOXYLASE 2 (GAD2); FUNCTIONS IN: calmodulin binding, glutamate decarboxylase activity; INVOLVED IN: nitrogen compound metabolic process, glutamate metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Glutamate decarboxylase (InterPro:IPR010107), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: GAD; calmodulin binding / glutamate decarboxylase (TAIR:AT5G17330.1); Has 1585 Blast hits to 1583 proteins in 477 species: Archae - 124; Bacteria - 775; Metazoa - 128; Fungi - 218; Plants - 185; Viruses - 2; Other Eukaryotes - 153 (source: NCBI BLink).  protein_id AT1G65960.1p  transcript_id AT1G65960.1  protein_id AT1G65960.1p  transcript_id AT1G65960.1  
At1g65970	chr1:024558075	0.0	C/24558075-24558229,24557878-24557957,24557527-24557780	AT1G65970.1  CDS  gene_syn F12P19.13, F12P19_13, PEROXIREDOXIN TPX2, TPX2, thioredoxin-dependent peroxidase 2  gene TPX2  function thioredoxin-dependent peroxidase 2  go_process cell redox homeostasis|GO:0045454||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function antioxidant activity|GO:0016209||ISS  product TPX2 (thioredoxin-dependent peroxidase 2); antioxidant/ oxidoreductase  note thioredoxin-dependent peroxidase 2 (TPX2); FUNCTIONS IN: oxidoreductase activity, antioxidant activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336), Redoxin (InterPro:IPR013740); BEST Arabidopsis thaliana protein match is: peroxiredoxin type 2, putative (TAIR:AT1G60740.1); Has 3189 Blast hits to 3188 proteins in 585 species: Archae - 7; Bacteria - 935; Metazoa - 160; Fungi - 204; Plants - 162; Viruses - 0; Other Eukaryotes - 1721 (source: NCBI BLink).  protein_id AT1G65970.1p  transcript_id AT1G65970.1  protein_id AT1G65970.1p  transcript_id AT1G65970.1  
At1g65980	chr1:024560599	0.0	C/24560599-24560753,24560311-24560390,24559524-24559777	AT1G65980.1  CDS  gene_syn F12P19.14, F12P19_14, PEROXIREDOXIN TPX1, TPX1, thioredoxin-dependent peroxidase 1  gene TPX1  function thioredoxin-dependent peroxidase  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function oxidoreductase activity|GO:0016491||IEA  go_function antioxidant activity|GO:0016209||ISS  product TPX1 (thioredoxin-dependent peroxidase 1); antioxidant/ oxidoreductase  note thioredoxin-dependent peroxidase 1 (TPX1); FUNCTIONS IN: oxidoreductase activity, antioxidant activity; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336), Redoxin (InterPro:IPR013740); BEST Arabidopsis thaliana protein match is: TPX2 (thioredoxin-dependent peroxidase 2); antioxidant/ oxidoreductase (TAIR:AT1G65970.1); Has 3182 Blast hits to 3181 proteins in 591 species: Archae - 7; Bacteria - 943; Metazoa - 160; Fungi - 204; Plants - 155; Viruses - 0; Other Eukaryotes - 1713 (source: NCBI BLink).  protein_id AT1G65980.1p  transcript_id AT1G65980.1  protein_id AT1G65980.1p  transcript_id AT1G65980.1  
At1g65980	chr1:024560599	0.0	C/24560599-24560753,24560311-24560390,24559702-24559777,24559595-24559649	AT1G65980.2  CDS  gene_syn F12P19.14, F12P19_14, PEROXIREDOXIN TPX1, TPX1, thioredoxin-dependent peroxidase 1  gene TPX1  function thioredoxin-dependent peroxidase  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function oxidoreductase activity|GO:0016491||IEA  go_function antioxidant activity|GO:0016209||ISS  product TPX1 (thioredoxin-dependent peroxidase 1); antioxidant/ oxidoreductase  note thioredoxin-dependent peroxidase 1 (TPX1); FUNCTIONS IN: oxidoreductase activity, antioxidant activity; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336), Redoxin (InterPro:IPR013740); BEST Arabidopsis thaliana protein match is: TPX2 (thioredoxin-dependent peroxidase 2); antioxidant/ oxidoreductase (TAIR:AT1G65970.1); Has 3023 Blast hits to 3023 proteins in 581 species: Archae - 4; Bacteria - 929; Metazoa - 159; Fungi - 201; Plants - 149; Viruses - 0; Other Eukaryotes - 1581 (source: NCBI BLink).  protein_id AT1G65980.2p  transcript_id AT1G65980.2  protein_id AT1G65980.2p  transcript_id AT1G65980.2  
At1g65985	chr1:024568292	0.0	C/24568292-24568470,24565798-24566383,24564495-24564598,24562944-24563161,24562578-24562861	AT1G65985.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67150.2); Has 440 Blast hits to 409 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 438; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G65985.1p  transcript_id AT1G65985.1  protein_id AT1G65985.1p  transcript_id AT1G65985.1  
At1g65990	chr1:024573317	0.0	C/24573317-24573471,24573138-24573217,24571603-24573029	AT1G65990.1  CDS  gene_syn F12P19.16, F12P19_16  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function antioxidant activity|GO:0016209||ISS  product type 2 peroxiredoxin-related / thiol specific antioxidant / mal allergen family protein  note type 2 peroxiredoxin-related / thiol specific antioxidant / mal allergen family protein; FUNCTIONS IN: oxidoreductase activity, antioxidant activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Thioredoxin fold (InterPro:IPR012335), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451), Redoxin (InterPro:IPR013740), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G10740.1); Has 3653 Blast hits to 3623 proteins in 604 species: Archae - 4; Bacteria - 925; Metazoa - 157; Fungi - 197; Plants - 785; Viruses - 0; Other Eukaryotes - 1585 (source: NCBI BLink).  protein_id AT1G65990.1p  transcript_id AT1G65990.1  protein_id AT1G65990.1p  transcript_id AT1G65990.1  
At1g66000	chr1:024574344	0.0	W/24574344-24575291	AT1G66000.1  CDS  gene_syn F12P19.17, F12P19_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF577 (InterPro:IPR007598); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G66060.1); Has 52 Blast hits to 32 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G66000.1p  transcript_id AT1G66000.1  protein_id AT1G66000.1p  transcript_id AT1G66000.1  
At1g66010	chr1:024575698	0.0	C/24575698-24576055	AT1G66010.1  pseudogenic_transcript  pseudo  gene_syn F15E12.21  note pseudogene, hypothetical protein  
At1g66020	chr1:024577576	0.0	W/24577576-24577809,24577887-24578163,24578256-24578634,24578733-24578954,24579035-24579176,24579362-24579610,24579704-24579997	AT1G66020.1  CDS  gene_syn F15E12.3, F15E12_3  go_process metabolic process|GO:0008152||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function lyase activity|GO:0016829||IEA  product terpene synthase/cyclase family protein  note terpene synthase/cyclase family protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; EXPRESSED IN: inflorescence meristem, hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase/cyclase family protein (TAIR:AT4G20200.1); Has 1036 Blast hits to 1024 proteins in 139 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1031; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G66020.1p  transcript_id AT1G66020.1  protein_id AT1G66020.1p  transcript_id AT1G66020.1  
At1g66030	chr1:024583149	0.0	W/24583149-24583652	AT1G66030.1  CDS  gene_syn CYP96A14P, F15E12.16, F15E12_16  gene CYP96A14P  function encodes a protein with cytochrome P450 domain  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  product CYP96A14P; electron carrier/ heme binding / iron ion binding / monooxygenase  note CYP96A14P; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, heme binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128); BEST Arabidopsis thaliana protein match is: CYP96A8; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G47620.1); Has 267 Blast hits to 266 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 267; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G66030.1p  transcript_id AT1G66030.1  protein_id AT1G66030.1p  transcript_id AT1G66030.1  
At1g66040	chr1:024586259	0.0	C/24586259-24586681,24585402-24585937,24585181-24585306,24584941-24585040,24584786-24584850,24584598-24584700,24584381-24584510,24584086-24584300,24583820-24583990	AT1G66040.1  CDS  gene_syn F15E12.8, F15E12_8, ORTH4, ORTHRUS 4, VARIANT IN METHYLATION 4, VIM4  gene VIM4  function predicted to encode a protein with an N-terminal PHD domain and two RING domains surrounding an SRA domain. Attempts to isolate ORTH4/VIM4 cDNA through RT-PCR were unsuccessful and analysis of the expression of this gene is difficult since it shares 99% nucleotide identity with ORTH5/VIM2.  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product VIM4 (VARIANT IN METHYLATION 4); protein binding / zinc ion binding  note VARIANT IN METHYLATION 4 (VIM4); FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), SRA-YDG (InterPro:IPR003105), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: VIM2 (VARIANT IN METHYLATION 2); protein binding / ubiquitin-protein ligase/ zinc ion binding (TAIR:AT1G66050.1); Has 5004 Blast hits to 4006 proteins in 303 species: Archae - 0; Bacteria - 8; Metazoa - 3933; Fungi - 251; Plants - 452; Viruses - 17; Other Eukaryotes - 343 (source: NCBI BLink).  protein_id AT1G66040.1p  transcript_id AT1G66040.1  protein_id AT1G66040.1p  transcript_id AT1G66040.1  
At1g66045	chr1:024588269	0.0	W/24588269-24588536,24588628-24588794	AT1G66045.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G66045.1p  transcript_id AT1G66045.1  protein_id AT1G66045.1p  transcript_id AT1G66045.1  
At1g66050	chr1:024589534	0.0	W/24589534-24589956,24590496-24591031,24591127-24591252,24591393-24591492,24591583-24591647,24591733-24591835,24591923-24592052,24592133-24592347,24592443-24592616	AT1G66050.1  CDS  gene_syn F15E12.5, F15E12_5, ORTH5, ORTHRUS 5, VARIANT IN METHYLATION 2, VIM2  gene VIM2  function Encodes a protein that is similar to VIM1 but is not involved in cytosine methylation. This protein has an N-terminal PHD domain and two RING domains surrounding an SRA domain. ORTH5/VIM2 has E3 ubiquitin ligase activity in vitro.  go_component cellular_component|GO:0005575||ND  go_process protein ubiquitination|GO:0016567|18643997|IDA  go_process DNA methylation on cytosine|GO:0032776|17242155|IMP  go_function ubiquitin-protein ligase activity|GO:0004842|18643997|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product VIM2 (VARIANT IN METHYLATION 2); protein binding / ubiquitin-protein ligase/ zinc ion binding  note VARIANT IN METHYLATION 2 (VIM2); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: DNA methylation on cytosine, protein ubiquitination; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), SRA-YDG (InterPro:IPR003105), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: VIM4 (VARIANT IN METHYLATION 4); protein binding / zinc ion binding (TAIR:AT1G66040.1); Has 4986 Blast hits to 3983 proteins in 306 species: Archae - 0; Bacteria - 8; Metazoa - 3912; Fungi - 244; Plants - 470; Viruses - 17; Other Eukaryotes - 335 (source: NCBI BLink).  protein_id AT1G66050.1p  transcript_id AT1G66050.1  protein_id AT1G66050.1p  transcript_id AT1G66050.1  
At1g66060	chr1:024594185	0.0	C/24594185-24595132	AT1G66060.1  CDS  gene_syn F15E12.9, F15E12_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF577 (InterPro:IPR007598); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G66000.1); Has 52 Blast hits to 32 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G66060.1p  transcript_id AT1G66060.1  protein_id AT1G66060.1p  transcript_id AT1G66060.1  
At1g66070	chr1:024597508	0.0	C/24597508-24597520,24597188-24597309,24596912-24597060,24596641-24596788,24596393-24596549,24596194-24596285	AT1G66070.1  CDS  gene_syn F15E12.10, F15E12_10  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product translation initiation factor-related  note translation initiation factor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor eIF3 subunit (InterPro:IPR013906); BEST Arabidopsis thaliana protein match is: translation initiation factor-related (TAIR:AT5G37475.1); Has 336 Blast hits to 334 proteins in 124 species: Archae - 2; Bacteria - 9; Metazoa - 148; Fungi - 90; Plants - 45; Viruses - 1; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT1G66070.1p  transcript_id AT1G66070.1  protein_id AT1G66070.1p  transcript_id AT1G66070.1  
At1g66080	chr1:024600925	0.0	C/24600925-24601027,24600356-24600825	AT1G66080.1  CDS  gene_syn F15E12.12, F15E12_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF775 (InterPro:IPR008493); Has 208 Blast hits to 206 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 107; Fungi - 59; Plants - 27; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G66080.1p  transcript_id AT1G66080.1  protein_id AT1G66080.1p  transcript_id AT1G66080.1  
At1g66090	chr1:024602221	0.0	W/24602221-24602729,24603793-24604573	AT1G66090.1  CDS  gene_syn F15E12.17, F15E12_17  go_component chloroplast|GO:0009507||IEA  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS class), putative  note disease resistance protein (TIR-NBS class), putative; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT1G56540.1); Has 5057 Blast hits to 4973 proteins in 185 species: Archae - 0; Bacteria - 31; Metazoa - 3; Fungi - 1; Plants - 5016; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G66090.1p  transcript_id AT1G66090.1  protein_id AT1G66090.1p  transcript_id AT1G66090.1  
At1g66100	chr1:024606245	0.0	C/24606245-24606473,24606071-24606148,24605876-24605973	AT1G66100.1  CDS  gene_syn F15E12.20, F15E12_20  function Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952|18674922|ISS  go_process defense response|GO:0006952||ISS  go_function toxin receptor binding|GO:0050827||ISS  product thionin, putative  note thionin, putative; FUNCTIONS IN: toxin receptor binding; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Thionin (InterPro:IPR001010); BEST Arabidopsis thaliana protein match is: THI2.2 (THIONIN 2.2); toxin receptor binding (TAIR:AT5G36910.1); Has 143 Blast hits to 143 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G66100.1p  transcript_id AT1G66100.1  protein_id AT1G66100.1p  transcript_id AT1G66100.1  
At1g66110	chr1:024609259	0.0	C/24609259-24610232,24609094-24609136	AT1G66110.1  CDS  gene_syn F15E12.15, F15E12_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF577 (InterPro:IPR007598); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G37410.1); Has 46 Blast hits to 28 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G66110.1p  transcript_id AT1G66110.1  protein_id AT1G66110.1p  transcript_id AT1G66110.1  
At1g66120	chr1:024612640	0.0	W/24612640-24612837,24613070-24613923,24614024-24614690	AT1G66120.1  CDS  gene_syn F15E12.22, F15E12_22  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  product acyl-activating enzyme 11 (AAE11)  note acyl-activating enzyme 11 (AAE11); FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: embryo, male gametophyte, sepal, carpel, stamen; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AAE12 (ACYL ACTIVATING ENZYME 12); catalytic (TAIR:AT1G65890.1); Has 51224 Blast hits to 47535 proteins in 2224 species: Archae - 550; Bacteria - 27882; Metazoa - 2878; Fungi - 2181; Plants - 1269; Viruses - 1; Other Eukaryotes - 16463 (source: NCBI BLink).  protein_id AT1G66120.1p  transcript_id AT1G66120.1  protein_id AT1G66120.1p  transcript_id AT1G66120.1  
At1g66130	chr1:024615040	0.0	W/24615040-24615507,24615819-24616119,24616417-24616742	AT1G66130.1  CDS  gene_syn F15E12.2, F15E12_2  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product oxidoreductase N-terminal domain-containing protein  note oxidoreductase N-terminal domain-containing protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase, N-terminal (InterPro:IPR000683), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: oxidoreductase family protein (TAIR:AT4G09670.1); Has 6040 Blast hits to 6039 proteins in 951 species: Archae - 98; Bacteria - 3583; Metazoa - 201; Fungi - 250; Plants - 48; Viruses - 0; Other Eukaryotes - 1860 (source: NCBI BLink).  protein_id AT1G66130.1p  transcript_id AT1G66130.1  protein_id AT1G66130.1p  transcript_id AT1G66130.1  
At1g66140	chr1:024620063	0.0	C/24620063-24620845	AT1G66140.1  CDS  gene_syn F15E12.19, F15E12_19, ZFP4, ZINC FINGER PROTEIN 4  gene ZFP4  function Encodes a zinc finger protein containing only a single zinc finger.  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product ZFP4 (ZINC FINGER PROTEIN 4); nucleic acid binding / transcription factor/ zinc ion binding  note ZINC FINGER PROTEIN 4 (ZFP4); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: ZFP7 (ZINC FINGER PROTEIN 7); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT1G24625.1); Has 439 Blast hits to 437 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 426; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G66140.1p  transcript_id AT1G66140.1  protein_id AT1G66140.1p  transcript_id AT1G66140.1  
At1g66145	chr1:024628530	0.0	C/24628530-24628835	AT1G66145.1  CDS  gene_syn CLAVATA3/ESR-RELATED 18, CLE18  gene CLE18  function Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.  go_component apoplast|GO:0048046|11457943|RCA  go_process signal transduction|GO:0007165||ISS  go_function receptor binding|GO:0005102||ISS  go_function protein binding|GO:0005515|11457943|ISS  product CLE18 (CLAVATA3/ESR-RELATED 18); protein binding / receptor binding  note CLAVATA3/ESR-RELATED 18 (CLE18); FUNCTIONS IN: protein binding, receptor binding; INVOLVED IN: signal transduction; LOCATED IN: apoplast; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G66145.1p  transcript_id AT1G66145.1  protein_id AT1G66145.1p  transcript_id AT1G66145.1  
At1g66150	chr1:024631503	0.0	W/24631503-24633798,24633883-24634415	AT1G66150.1  CDS  gene_syn F15E12.4, F15E12_4, TMK1, TRANSMEMBRANE KINASE 1  gene TMK1  function receptor-like transmembrane kinase I (TMK1)  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component extracellular region|GO:0005576|1332795|ISS  go_process signal transduction|GO:0007165|8224199|IDA  go_function transmembrane receptor protein serine/threonine kinase activity|GO:0004675|1332795|IDA  product TMK1 (TRANSMEMBRANE KINASE 1); transmembrane receptor protein serine/threonine kinase  note TRANSMEMBRANE KINASE 1 (TMK1); FUNCTIONS IN: transmembrane receptor protein serine/threonine kinase activity; INVOLVED IN: signal transduction; LOCATED IN: extracellular region, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT2G01820.1); Has 119805 Blast hits to 98580 proteins in 3454 species: Archae - 85; Bacteria - 10147; Metazoa - 47434; Fungi - 7531; Plants - 36891; Viruses - 405; Other Eukaryotes - 17312 (source: NCBI BLink).  protein_id AT1G66150.1p  transcript_id AT1G66150.1  protein_id AT1G66150.1p  transcript_id AT1G66150.1  
At1g66160	chr1:024637218	0.0	W/24637218-24637364,24637413-24638513	AT1G66160.2  CDS  gene_syn F15E12.6, F15E12_6  go_component ubiquitin ligase complex|GO:0000151||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  go_process response to chitin|GO:0010200|17722694|IEP  product U-box domain-containing protein  note U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein (TAIR:AT5G37490.1); Has 781 Blast hits to 773 proteins in 50 species: Archae - 0; Bacteria - 10; Metazoa - 39; Fungi - 6; Plants - 720; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G66160.2p  transcript_id AT1G66160.2  protein_id AT1G66160.2p  transcript_id AT1G66160.2  
At1g66160	chr1:024637218	0.0	W/24637218-24638513	AT1G66160.1  CDS  gene_syn F15E12.6, F15E12_6  go_component ubiquitin ligase complex|GO:0000151||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  go_process response to chitin|GO:0010200|17722694|IEP  product U-box domain-containing protein  note U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein (TAIR:AT5G37490.1); Has 1387 Blast hits to 1378 proteins in 121 species: Archae - 0; Bacteria - 14; Metazoa - 190; Fungi - 41; Plants - 975; Viruses - 3; Other Eukaryotes - 164 (source: NCBI BLink).  protein_id AT1G66160.1p  transcript_id AT1G66160.1  protein_id AT1G66160.1p  transcript_id AT1G66160.1  
At1g66170	chr1:024640928	0.0	C/24640928-24641222,24640450-24640693,24638793-24640368	AT1G66170.1  CDS  gene_syn F15E12.11, F15E12_11, MALE MEIOCYTE DEATH 1, MMD1  gene MMD1  function encodes a PHD-domain containing protein required for male meiosis. Gene is expressed in developing male meiocytes and protein is localized to the nucleus.  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634|12782723|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process male meiosis|GO:0007140|12782723|IMP  go_process microsporogenesis|GO:0009556|12782723|IDA  go_function DNA binding|GO:0003677||ISS  product MMD1 (MALE MEIOCYTE DEATH 1); DNA binding / protein binding / zinc ion binding  note MALE MEIOCYTE DEATH 1 (MMD1); FUNCTIONS IN: protein binding, DNA binding, zinc ion binding; INVOLVED IN: microsporogenesis, regulation of transcription, DNA-dependent, male meiosis; LOCATED IN: nucleus; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT2G01810.1); Has 650 Blast hits to 637 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 300; Fungi - 213; Plants - 119; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G66170.1p  transcript_id AT1G66170.1  protein_id AT1G66170.1p  transcript_id AT1G66170.1  
At1g66173	chr1:024642586	0.0	W/24642586-24644068	AT1G66173.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G66173.1  
At1g66180	chr1:024647221	0.0	W/24647221-24648513	AT1G66180.1  CDS  gene_syn F15E12.7, F15E12_7  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT5G37540.1); Has 1138 Blast hits to 1126 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 110; Plants - 1011; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G66180.1p  transcript_id AT1G66180.1  protein_id AT1G66180.1p  transcript_id AT1G66180.1  
At1g66190	chr1:024653029	0.0	C/24653029-24653841	AT1G66190.1  CDS  gene_syn F15E12.13, F15E12_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G37550.1); Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 9; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G66190.1p  transcript_id AT1G66190.1  protein_id AT1G66190.1p  transcript_id AT1G66190.1  
At1g66200	chr1:024657447	0.0	C/24657447-24657520,24657232-24657271,24657024-24657127,24656855-24656903,24656662-24656768,24656485-24656572,24656187-24656390,24656003-24656094,24655552-24655612	AT1G66200.2  CDS  gene_syn ATGSR2, F15E12.14, F15E12_14, GLUTAMINE SYNTHETASE  gene ATGSR2  function encodes a cytosolic glutamate synthetase, this enzyme has low affinity with substrate ammonium  go_component vacuole|GO:0005773|15539469|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function copper ion binding|GO:0005507|16526091|IDA  go_component cytosol|GO:0005829|10482686|TAS  go_process response to sucrose stimulus|GO:0009744|10482686|IEP  go_process response to glucose stimulus|GO:0009749|10482686|IEP  go_process response to fructose stimulus|GO:0009750|10482686|IEP  go_process nitrate assimilation|GO:0042128|16338958|TAS  go_function glutamate-ammonia ligase activity|GO:0004356|14757761|IDA  go_function glutamate-ammonia ligase activity|GO:0004356|1684022|IEP  go_function glutamate-ammonia ligase activity|GO:0004356||ISS  product ATGSR2; copper ion binding / glutamate-ammonia ligase  note ATGSR2; FUNCTIONS IN: glutamate-ammonia ligase activity, copper ion binding; INVOLVED IN: response to fructose stimulus, nitrate assimilation, response to salt stress, response to sucrose stimulus, response to glucose stimulus; LOCATED IN: cytosol, cytosolic ribosome, apoplast, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine synthetase, catalytic region (InterPro:IPR008146), Glutamine synthetase, beta-Grasp (InterPro:IPR008147), Glutamine synthetase/guanido kinase, catalytic region (InterPro:IPR014746); BEST Arabidopsis thaliana protein match is: ATGSR1; copper ion binding / glutamate-ammonia ligase (TAIR:AT5G37600.1); Has 6434 Blast hits to 6434 proteins in 1942 species: Archae - 67; Bacteria - 2721; Metazoa - 374; Fungi - 156; Plants - 1071; Viruses - 3; Other Eukaryotes - 2042 (source: NCBI BLink).  protein_id AT1G66200.2p  transcript_id AT1G66200.2  protein_id AT1G66200.2p  transcript_id AT1G66200.2  
At1g66200	chr1:024657447	0.0	C/24657447-24657520,24657232-24657271,24657024-24657127,24656855-24656903,24656662-24656768,24656485-24656572,24656187-24656390,24656003-24656094,24655755-24655914,24655520-24655672	AT1G66200.1  CDS  gene_syn ATGSR2, F15E12.14, F15E12_14, GLUTAMINE SYNTHETASE  gene ATGSR2  function encodes a cytosolic glutamate synthetase, this enzyme has low affinity with substrate ammonium  go_component vacuole|GO:0005773|15539469|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function copper ion binding|GO:0005507|16526091|IDA  go_component cytosol|GO:0005829|10482686|TAS  go_process response to sucrose stimulus|GO:0009744|10482686|IEP  go_process response to glucose stimulus|GO:0009749|10482686|IEP  go_process response to fructose stimulus|GO:0009750|10482686|IEP  go_process nitrate assimilation|GO:0042128|16338958|TAS  go_function glutamate-ammonia ligase activity|GO:0004356|14757761|IDA  go_function glutamate-ammonia ligase activity|GO:0004356|1684022|IEP  go_function glutamate-ammonia ligase activity|GO:0004356||ISS  product ATGSR2; copper ion binding / glutamate-ammonia ligase  note ATGSR2; FUNCTIONS IN: glutamate-ammonia ligase activity, copper ion binding; INVOLVED IN: response to fructose stimulus, nitrate assimilation, response to salt stress, response to sucrose stimulus, response to glucose stimulus; LOCATED IN: cytosol, cytosolic ribosome, apoplast, vacuole, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine synthetase, catalytic region (InterPro:IPR008146), Glutamine synthetase, beta-Grasp (InterPro:IPR008147), Glutamine synthetase/guanido kinase, catalytic region (InterPro:IPR014746); BEST Arabidopsis thaliana protein match is: ATGSR1; copper ion binding / glutamate-ammonia ligase (TAIR:AT5G37600.1); Has 7593 Blast hits to 7590 proteins in 2077 species: Archae - 111; Bacteria - 3300; Metazoa - 395; Fungi - 167; Plants - 1090; Viruses - 3; Other Eukaryotes - 2527 (source: NCBI BLink).  protein_id AT1G66200.1p  transcript_id AT1G66200.1  protein_id AT1G66200.1p  transcript_id AT1G66200.1  
At1g66210	chr1:024668534	0.0	C/24668534-24668650,24668351-24668442,24668155-24668252,24667229-24668046,24666846-24667141,24666641-24666755,24666386-24666563,24665735-24666300	AT1G66210.1  CDS  gene_syn T6J19.3, T6J19_3  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product subtilase family protein  note subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT1G66220.1); Has 4930 Blast hits to 4484 proteins in 779 species: Archae - 149; Bacteria - 2796; Metazoa - 208; Fungi - 171; Plants - 912; Viruses - 0; Other Eukaryotes - 694 (source: NCBI BLink).  protein_id AT1G66210.1p  transcript_id AT1G66210.1  protein_id AT1G66210.1p  transcript_id AT1G66210.1  
At1g66220	chr1:024670536	0.0	W/24670536-24670643,24670734-24670825,24670915-24671012,24671088-24671908,24671999-24672291,24672381-24672495,24672603-24672774,24673099-24673661	AT1G66220.1  CDS  gene_syn T6J19.4, T6J19_4  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product subtilase family protein  note subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT1G66210.1); Has 4679 Blast hits to 4073 proteins in 660 species: Archae - 152; Bacteria - 2800; Metazoa - 64; Fungi - 132; Plants - 907; Viruses - 0; Other Eukaryotes - 624 (source: NCBI BLink).  protein_id AT1G66220.1p  transcript_id AT1G66220.1  protein_id AT1G66220.1p  transcript_id AT1G66220.1  
At1g66230	chr1:024677322	0.0	W/24677322-24677584,24677661-24678246	AT1G66230.1  CDS  gene_syn AtMYB20, MYB20, T6J19.5, T6J19_5, myb domain protein 20  gene MYB20  function Encodes a putative transcription factor (MYB20).  go_component nucleus|GO:0005634|18952777|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_function DNA binding|GO:0003677|9839469|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9839469|ISS  product MYB20 (myb domain protein 20); DNA binding / transcription factor  note myb domain protein 20 (MYB20); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of secondary cell wall thickening; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB43 (myb domain protein 43); DNA binding / transcription factor (TAIR:AT5G16600.1); Has 5929 Blast hits to 5530 proteins in 333 species: Archae - 0; Bacteria - 0; Metazoa - 554; Fungi - 173; Plants - 3701; Viruses - 4; Other Eukaryotes - 1497 (source: NCBI BLink).  protein_id AT1G66230.1p  transcript_id AT1G66230.1  protein_id AT1G66230.1p  transcript_id AT1G66230.1  
At1g66235	chr1:024683647	0.0	C/24683647-24683874,24683006-24683575	AT1G66235.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24380.1); Has 159 Blast hits to 159 proteins in 30 species: Archae - 0; Bacteria - 17; Metazoa - 15; Fungi - 0; Plants - 116; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G66235.1p  transcript_id AT1G66235.1  protein_id AT1G66235.1p  transcript_id AT1G66235.1  
At1g66240	chr1:024686778	0.0	C/24686778-24686832,24686445-24686590	AT1G66240.2  CDS  gene_syn ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1, ATATX1, ATX1, T6J19.6, T6J19_6  gene ATX1  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  product ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1); metal ion binding  note ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1 (ATX1); FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: CCH (COPPER CHAPERONE); copper chaperone (TAIR:AT3G56240.1).  protein_id AT1G66240.2p  transcript_id AT1G66240.2  protein_id AT1G66240.2p  transcript_id AT1G66240.2  
At1g66240	chr1:024687229	0.0	C/24687229-24687327,24686778-24686853,24686445-24686590	AT1G66240.1  CDS  gene_syn ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1, ATATX1, ATX1, T6J19.6, T6J19_6  gene ATX1  go_component endomembrane system|GO:0012505||IEA  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  product ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1); metal ion binding  note ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1 (ATX1); FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: CCH (COPPER CHAPERONE); copper chaperone (TAIR:AT3G56240.1); Has 1008 Blast hits to 970 proteins in 184 species: Archae - 4; Bacteria - 117; Metazoa - 115; Fungi - 131; Plants - 624; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G66240.1p  transcript_id AT1G66240.1  protein_id AT1G66240.1p  transcript_id AT1G66240.1  
At1g66245	chr1:024690444	0.0	W/24690444-24691307	AT1G66245.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 368 Blast hits to 315 proteins in 65 species: Archae - 0; Bacteria - 15; Metazoa - 76; Fungi - 34; Plants - 29; Viruses - 2; Other Eukaryotes - 212 (source: NCBI BLink).  protein_id AT1G66245.1p  transcript_id AT1G66245.1  protein_id AT1G66245.1p  transcript_id AT1G66245.1  
At1g66250	chr1:024693063	0.0	W/24693063-24693147,24693662-24694912,24695024-24695051,24695263-24695416	AT1G66250.1  CDS  gene_syn T6J19.7, T6J19_7  go_component plasma membrane|GO:0005886|17317660|IDA  go_component anchored to plasma membrane|GO:0046658|12805588|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative (TAIR:AT2G01630.1); Has 1805 Blast hits to 1748 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 48; Plants - 1753; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G66250.1p  transcript_id AT1G66250.1  protein_id AT1G66250.1p  transcript_id AT1G66250.1  
At1g66260	chr1:024697662	0.0	C/24697662-24697883,24696767-24696916,24696608-24696676,24696330-24696520,24696178-24696246,24695895-24696081	AT1G66260.1  CDS  gene_syn T6J19.1, T6J19_1  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product RNA and export factor-binding protein, putative  note RNA and export factor-binding protein, putative; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA and export factor-binding protein, putative (TAIR:AT5G37720.1); Has 5292 Blast hits to 4874 proteins in 386 species: Archae - 0; Bacteria - 278; Metazoa - 2835; Fungi - 963; Plants - 678; Viruses - 27; Other Eukaryotes - 511 (source: NCBI BLink).  protein_id AT1G66260.1p  transcript_id AT1G66260.1  protein_id AT1G66260.1p  transcript_id AT1G66260.1  
At1g66270	chr1:024702831	0.0	C/24702831-24702995,24702559-24702628,24702386-24702441,24702223-24702298,24701978-24702055,24701800-24701881,24701458-24701710,24701222-24701337,24700926-24701143,24700784-24700818,24700597-24700699,24700397-24700505,24700110-24700317	AT1G66270.2  CDS  gene_syn BGLU21, T6J19.2  gene BGLU21  go_component vacuole|GO:0005773|15539469|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_process cellular response to phosphate starvation|GO:0016036|7640358|TAS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU21; catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BGLU21; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: cellular response to phosphate starvation, response to salt stress; LOCATED IN: vacuole, membrane; EXPRESSED IN: root, callus, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU22; catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G66280.1); Has 5714 Blast hits to 5504 proteins in 795 species: Archae - 98; Bacteria - 3126; Metazoa - 577; Fungi - 132; Plants - 849; Viruses - 0; Other Eukaryotes - 932 (source: NCBI BLink).  protein_id AT1G66270.2p  transcript_id AT1G66270.2  protein_id AT1G66270.2p  transcript_id AT1G66270.2  
At1g66270	chr1:024702831	0.0	C/24702831-24702995,24702559-24702628,24702386-24702441,24702223-24702298,24701978-24702055,24701800-24701887,24701458-24701710,24701222-24701337,24700926-24701143,24700784-24700818,24700597-24700699,24700397-24700505,24700110-24700317	AT1G66270.1  CDS  gene_syn BGLU21, T6J19.2  gene BGLU21  go_component vacuole|GO:0005773|15539469|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_process cellular response to phosphate starvation|GO:0016036|7640358|TAS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU21; catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BGLU21; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: cellular response to phosphate starvation, response to salt stress; LOCATED IN: vacuole, membrane; EXPRESSED IN: root, callus, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU22; catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G66280.1); Has 5737 Blast hits to 5514 proteins in 796 species: Archae - 98; Bacteria - 3130; Metazoa - 592; Fungi - 134; Plants - 849; Viruses - 0; Other Eukaryotes - 934 (source: NCBI BLink).  protein_id AT1G66270.1p  transcript_id AT1G66270.1  protein_id AT1G66270.1p  transcript_id AT1G66270.1  
At1g66280	chr1:024709573	0.0	C/24709573-24709737,24709345-24709414,24709212-24709267,24708807-24708882,24708606-24708683,24708429-24708516,24708088-24708340,24707879-24707994,24707584-24707801,24707445-24707479,24707235-24707337,24707043-24707151,24706759-24706966	AT1G66280.1  CDS  gene_syn BGLU22, T27F4.3, T27F4_3  gene BGLU22  go_component membrane|GO:0016020|17432890|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU22; catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BGLU22; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: response to salt stress; LOCATED IN: membrane; EXPRESSED IN: root, callus, pollen tube, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU21; catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G66270.1); Has 5733 Blast hits to 5507 proteins in 796 species: Archae - 98; Bacteria - 3122; Metazoa - 586; Fungi - 134; Plants - 853; Viruses - 0; Other Eukaryotes - 940 (source: NCBI BLink).  protein_id AT1G66280.1p  transcript_id AT1G66280.1  protein_id AT1G66280.1p  transcript_id AT1G66280.1  
At1g66290	chr1:024713887	0.0	C/24713887-24714843,24713657-24713797,24713306-24713569	AT1G66290.1  CDS  gene_syn T27F4.4, T27F4_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G66320.1); Has 1302 Blast hits to 1268 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1302; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G66290.1p  transcript_id AT1G66290.1  protein_id AT1G66290.1p  transcript_id AT1G66290.1  
At1g66300	chr1:024717082	0.0	C/24717082-24718050,24716867-24717007,24716497-24716757	AT1G66300.1  CDS  gene_syn T27F4.5, T27F4_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G66310.1); Has 1151 Blast hits to 1115 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1151; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G66300.1p  transcript_id AT1G66300.1  protein_id AT1G66300.1p  transcript_id AT1G66300.1  
At1g66310	chr1:024723549	0.0	C/24723549-24724475,24723325-24723465,24722971-24723231	AT1G66310.1  CDS  gene_syn T27F4.6, T27F4_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G66300.1); Has 1410 Blast hits to 1373 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1410; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G66310.1p  transcript_id AT1G66310.1  protein_id AT1G66310.1p  transcript_id AT1G66310.1  
At1g66320	chr1:024727643	0.0	C/24727643-24728614,24727406-24727546,24727041-24727301	AT1G66320.1  CDS  gene_syn T27F4.7, T27F4_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G66640.1); Has 1155 Blast hits to 1117 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1155; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G66320.1p  transcript_id AT1G66320.1  protein_id AT1G66320.1p  transcript_id AT1G66320.1  
At1g66330	chr1:024731906	0.0	C/24731906-24732144,24731667-24731813,24731506-24731579,24731349-24731425,24731187-24731258,24731007-24731075,24730868-24730917,24730674-24730782,24730529-24730597,24730345-24730448,24730131-24730206,24729880-24730047	AT1G66330.1  CDS  gene_syn T27F4.8, T27F4_8  go_process senescence|GO:0010149||ISS  product senescence-associated family protein  note senescence-associated family protein; INVOLVED IN: senescence; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 32 Blast hits to 32 proteins in 13 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G66330.1p  transcript_id AT1G66330.1  protein_id AT1G66330.1p  transcript_id AT1G66330.1  
At1g66330	chr1:024731906	0.0	C/24731906-24732144,24731667-24731813,24731506-24731579,24731349-24731425,24731187-24731258,24731007-24731075,24730868-24730917,24730674-24730782,24730529-24730597,24730345-24730448,24730131-24730206,24729880-24730047	AT1G66330.2  CDS  gene_syn T27F4.8, T27F4_8  go_process senescence|GO:0010149||ISS  product senescence-associated family protein  note senescence-associated family protein; INVOLVED IN: senescence; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 32 Blast hits to 32 proteins in 13 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G66330.2p  transcript_id AT1G66330.2  protein_id AT1G66330.2p  transcript_id AT1G66330.2  
At1g66340	chr1:024734698	0.0	W/24734698-24735603,24735679-24736047,24736125-24736379,24736462-24736589,24736680-24736877,24737006-24737366	AT1G66340.1  CDS  gene_syn EIN1, ETHYLENE INSENSITIVE 1, ETHYLENE RESPONSE, ETHYLENE RESPONSE 1, ETR, ETR1, HISTIDINE KINASE ETR1, T27F4.9, T27F4_9  gene ETR1  function Similar to prokaryote sensory transduction proteins. Contains a histidine kinase and a response regulator domain. Homodimer. Membrane component. Binds ethylene. Mutations affect ethylene binding and metabolism of other plant hormones such as auxin, cytokinins, ABA and gibberellic acid. Ethylene receptor. Has histidine kinase activity. Is regulated by RTE1.  go_component endoplasmic reticulum|GO:0005783|11916973|IDA  go_component endoplasmic reticulum membrane|GO:0005789|11916973|IDA  go_process defense response|GO:0006952|16255250|TAS  go_process response to heat|GO:0009408|15923322|IMP  go_process response to insect|GO:0009625|15923339|IMP  go_process response to salt stress|GO:0009651|15044023|IEP  go_process cytokinin metabolic process|GO:0009690|15773852|IMP  go_process detection of ethylene stimulus|GO:0009727|9974395|IMP  go_process response to auxin stimulus|GO:0009733|15773852|IMP  go_process response to abscisic acid stimulus|GO:0009737|15773852|IMP  go_process response to gibberellin stimulus|GO:0009739|15773852|IMP  go_process jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway|GO:0009871|9191038|TAS  go_process negative regulation of ethylene mediated signaling pathway|GO:0010105|11916973|TAS  go_process negative regulation of ethylene mediated signaling pathway|GO:0010105|11950991|TAS  go_process negative regulation of ethylene mediated signaling pathway|GO:0010105|12177468|TAS  go_process negative regulation of ethylene mediated signaling pathway|GO:0010105|12481081|TAS  go_process negative regulation of ethylene mediated signaling pathway|GO:0010105|12509505|TAS  go_process negative regulation of ethylene mediated signaling pathway|GO:0010105|12953109|TAS  go_process negative regulation of ethylene mediated signaling pathway|GO:0010105|7759498|TAS  go_process negative regulation of ethylene mediated signaling pathway|GO:0010105|8211181|TAS  go_process negative regulation of ethylene mediated signaling pathway|GO:0010105|8525372|TAS  go_process negative regulation of ethylene mediated signaling pathway|GO:0010105|9695954|TAS  go_process regulation of stomatal movement|GO:0010119|16961732|IMP  go_process sugar mediated signaling|GO:0010182|12663220|TAS  go_process defense response to bacterium|GO:0042742|19095898|IMP  go_process hydrogen peroxide biosynthetic process|GO:0050665|16961732|IMP  go_process callose deposition in cell wall during defense response|GO:0052544|19095898|IMP  go_function two-component response regulator activity|GO:0000156||ISS  go_function protein histidine kinase activity|GO:0004673|15703053|TAS  go_function protein histidine kinase activity|GO:0004673||ISS  go_function ethylene binding|GO:0051740|15703053|IDA  product ETR1 (ETHYLENE RESPONSE 1); ethylene binding / protein histidine kinase/ two-component response regulator  note ETHYLENE RESPONSE 1 (ETR1); FUNCTIONS IN: ethylene binding, two-component response regulator activity, protein histidine kinase activity; INVOLVED IN: in 16 processes; LOCATED IN: endoplasmic reticulum, endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), Signal transduction histidine kinase, core (InterPro:IPR005467), Signal transduction histidine kinase, hybrid-type, ethylene sensor (InterPro:IPR014525), ATP-binding region, ATPase-like (InterPro:IPR003594), CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver region (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region (InterPro:IPR003661), GAF (InterPro:IPR003018), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: ERS1 (ETHYLENE RESPONSE SENSOR 1); ethylene binding / protein histidine kinase/ receptor (TAIR:AT2G40940.1); Has 61194 Blast hits to 58151 proteins in 1769 species: Archae - 407; Bacteria - 50286; Metazoa - 13; Fungi - 1145; Plants - 1599; Viruses - 21; Other Eukaryotes - 7723 (source: NCBI BLink).  protein_id AT1G66340.1p  transcript_id AT1G66340.1  protein_id AT1G66340.1p  transcript_id AT1G66340.1  
At1g66345	chr1:024737719	0.0	W/24737719-24739353	AT1G66345.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G01110.1); Has 14941 Blast hits to 5030 proteins in 159 species: Archae - 3; Bacteria - 14; Metazoa - 443; Fungi - 211; Plants - 13756; Viruses - 0; Other Eukaryotes - 514 (source: NCBI BLink).  protein_id AT1G66345.1p  transcript_id AT1G66345.1  protein_id AT1G66345.1p  transcript_id AT1G66345.1  
At1g66350	chr1:024748327	0.0	W/24748327-24749862	AT1G66350.1  CDS  gene_syn RGA-LIKE 1, RGL, RGL1, T27F4.10, T27F4_10  gene RGL1  function Negative regulator of GA responses, member of GRAS family of transcription factors. Also belongs to the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. RGL1 may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Rapidly degraded in response to GA. Involved in flower and fruit development.  go_component nucleus|GO:0005634|11826301|IDA  go_component nucleus|GO:0005634|11826301|TAS  go_process response to salt stress|GO:0009651|16400150|IGI  go_process response to ethylene stimulus|GO:0009723|16400150|IGI  go_process response to abscisic acid stimulus|GO:0009737|16400150|IGI  go_process response to gibberellin stimulus|GO:0009739|17333251|IEP  go_process gibberellic acid mediated signaling|GO:0009740|11826301|TAS  go_process salicylic acid mediated signaling pathway|GO:0009863|18450451|IGI  go_process jasmonic acid mediated signaling pathway|GO:0009867|18450451|IGI  go_process negative regulation of gibberellic acid mediated signaling|GO:0009938|11826301|IMP  go_process hyperosmotic salinity response|GO:0042538|16400150|IGI  go_process regulation of oxygen and reactive oxygen species metabolic process|GO:0080010|18450450|IGI  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11826301|ISS  go_function transcription factor activity|GO:0003700|11826301|TAS  product RGL1 (RGA-LIKE 1); transcription factor  note RGA-LIKE 1 (RGL1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 10 processes; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: RGL2 (RGA-LIKE 2); transcription factor (TAIR:AT3G03450.1); Has 1584 Blast hits to 1535 proteins in 199 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 1580; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G66350.1p  transcript_id AT1G66350.1  protein_id AT1G66350.1p  transcript_id AT1G66350.1  
At1g66360	chr1:024751431	0.0	W/24751431-24751541,24752061-24752156,24752290-24752607	AT1G66360.1  CDS  gene_syn T27F4.11, T27F4_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT5G37740.1); Has 2764 Blast hits to 2436 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 1956; Fungi - 194; Plants - 441; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).  protein_id AT1G66360.1p  transcript_id AT1G66360.1  protein_id AT1G66360.1p  transcript_id AT1G66360.1  
At1g66370	chr1:024753634	0.0	W/24753634-24753754,24753896-24754025,24754115-24754604	AT1G66370.1  CDS  gene_syn AtMYB113, MYB113, T27F4.12, T27F4_12, myb domain protein 113  gene MYB113  function Encodes a member of the MYB family of transcription factors. Involved in regulation of anthocyanin biosynthesis. Affects the expression of enzymes involved in later steps of anthocyanin biosynthesis.  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process regulation of anthocyanin biosynthetic process|GO:0031540|18036197|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product MYB113 (myb domain protein 113); DNA binding / transcription factor  note myb domain protein 113 (MYB113); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to jasmonic acid stimulus, regulation of anthocyanin biosynthetic process, regulation of transcription; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB90 (MYB DOMAIN PROTEIN 90); DNA binding / transcription factor (TAIR:AT1G66390.1); Has 5998 Blast hits to 5605 proteins in 347 species: Archae - 0; Bacteria - 0; Metazoa - 616; Fungi - 266; Plants - 3729; Viruses - 3; Other Eukaryotes - 1384 (source: NCBI BLink).  protein_id AT1G66370.1p  transcript_id AT1G66370.1  protein_id AT1G66370.1p  transcript_id AT1G66370.1  
At1g66380	chr1:024757413	0.0	W/24757413-24757533,24758121-24758250,24758322-24758490	AT1G66380.1  CDS  gene_syn AtMYB114, MYB114, T27F4.13, T27F4_13, myb domain protein 114  gene MYB114  function Encodes a member of the MYB family of transcription factors. Involved in regulation of anthocyanin biosynthesis. Affects the expression of enzymes involved in later steps of anthocyanin biosynthesis  go_process regulation of transcription, DNA-dependent|GO:0006355|11597504|ISS  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process regulation of anthocyanin biosynthetic process|GO:0031540|18036197|IMP  go_function DNA binding|GO:0003677|11597504|ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11597504|ISS  product MYB114 (myb domain protein 114); DNA binding / transcription factor  note myb domain protein 114 (MYB114); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to jasmonic acid stimulus, regulation of transcription, DNA-dependent, regulation of anthocyanin biosynthetic process; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB90 (MYB DOMAIN PROTEIN 90); DNA binding / transcription factor (TAIR:AT1G66390.1); Has 6160 Blast hits to 5757 proteins in 366 species: Archae - 0; Bacteria - 0; Metazoa - 616; Fungi - 305; Plants - 3738; Viruses - 3; Other Eukaryotes - 1498 (source: NCBI BLink).  protein_id AT1G66380.1p  transcript_id AT1G66380.1  protein_id AT1G66380.1p  transcript_id AT1G66380.1  
At1g66390	chr1:024764052	0.0	W/24764052-24764172,24764690-24764819,24764902-24765400	AT1G66390.1  CDS  gene_syn ATMYB90, MYB DOMAIN PROTEIN 90, MYB90, PAP2, PRODUCTION OF ANTHOCYANIN PIGMENT 2, T27F4.14, T27F4_14  gene MYB90  function production of anthocyanin pigment 2 protein (PAP2)  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product MYB90 (MYB DOMAIN PROTEIN 90); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 90 (MYB90); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: stem, leaf whorl, embryo, sepal, stamen; EXPRESSED DURING: 4 anthesis, D bilateral stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: PAP1 (PRODUCTION OF ANTHOCYANIN PIGMENT 1); DNA binding / transcription factor (TAIR:AT1G56650.1); Has 6120 Blast hits to 5703 proteins in 363 species: Archae - 0; Bacteria - 0; Metazoa - 652; Fungi - 290; Plants - 3735; Viruses - 3; Other Eukaryotes - 1440 (source: NCBI BLink).  protein_id AT1G66390.1p  transcript_id AT1G66390.1  protein_id AT1G66390.1p  transcript_id AT1G66390.1  
At1g66400	chr1:024770856	0.0	C/24770856-24771329	AT1G66400.1  CDS  gene_syn T27F4.15, T27F4_15  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calmodulin-related protein, putative  note calmodulin-related protein, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: TCH2 (TOUCH 2); calcium ion binding (TAIR:AT5G37770.1); Has 24300 Blast hits to 14866 proteins in 1331 species: Archae - 0; Bacteria - 110; Metazoa - 10840; Fungi - 5715; Plants - 3907; Viruses - 4; Other Eukaryotes - 3724 (source: NCBI BLink).  protein_id AT1G66400.1p  transcript_id AT1G66400.1  protein_id AT1G66400.1p  transcript_id AT1G66400.1  
At1g66410	chr1:024775710	0.0	C/24775710-24775785,24774431-24774804	AT1G66410.1  CDS  gene_syn ACAM-4, CALMODULIN 4, CAM4, T27F4.1, T27F4_1, calmodulin 4  gene CAM4  function encodes a calmodulin  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process calcium-mediated signaling|GO:0019722|8507825|TAS  go_function signal transducer activity|GO:0004871|8507825|TAS  go_function calcium ion binding|GO:0005509|8507825|TAS  go_function calcium ion binding|GO:0005509||ISS  product CAM4 (calmodulin 4); calcium ion binding / signal transducer  note calmodulin 4 (CAM4); FUNCTIONS IN: signal transducer activity, calcium ion binding; INVOLVED IN: calcium-mediated signaling; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: CAM1 (CALMODULIN 1); calcium ion binding (TAIR:AT5G37780.1); Has 26112 Blast hits to 18172 proteins in 1450 species: Archae - 0; Bacteria - 146; Metazoa - 12377; Fungi - 5182; Plants - 4240; Viruses - 0; Other Eukaryotes - 4167 (source: NCBI BLink).  protein_id AT1G66410.1p  transcript_id AT1G66410.1  protein_id AT1G66410.1p  transcript_id AT1G66410.1  
At1g66420	chr1:024777184	0.0	W/24777184-24778032	AT1G66420.1  CDS  gene_syn T27F4.16, T27F4_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transcription regulator activity|GO:0030528|12535344|TAS  product transcription regulator  note transcription regulator; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related (TAIR:AT1G61730.1); Has 149 Blast hits to 149 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G66420.1p  transcript_id AT1G66420.1  protein_id AT1G66420.1p  transcript_id AT1G66420.1  
At1g66430	chr1:024778400	0.0	W/24778400-24778550,24778770-24778972,24779048-24779260,24779333-24779530,24779632-24779769,24779936-24780052,24780259-24780393	AT1G66430.1  CDS  gene_syn F28G11.11, F28G11_11  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process sucrose biosynthetic process|GO:0005986||IEA  go_process D-ribose metabolic process|GO:0006014||IEA  go_process sucrose catabolic process, using beta-fructofuranosidase|GO:0019575||IEA  go_process acetate fermentation|GO:0019654||IEA  go_function ribokinase activity|GO:0004747||IEA  go_function kinase activity|GO:0016301||ISS  product pfkB-type carbohydrate kinase family protein  note pfkB-type carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process, acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-type carbohydrate kinase family protein (TAIR:AT5G51830.1); Has 12534 Blast hits to 12532 proteins in 1345 species: Archae - 227; Bacteria - 7790; Metazoa - 198; Fungi - 118; Plants - 340; Viruses - 0; Other Eukaryotes - 3861 (source: NCBI BLink).  protein_id AT1G66430.1p  transcript_id AT1G66430.1  protein_id AT1G66430.1p  transcript_id AT1G66430.1  
At1g66440	chr1:024782171	0.0	W/24782171-24784351	AT1G66440.1  CDS  gene_syn F28G11.16, F28G11_16  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT1G66450.1); Has 1137 Blast hits to 486 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1134; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G66440.1p  transcript_id AT1G66440.1  protein_id AT1G66440.1p  transcript_id AT1G66440.1  
At1g66450	chr1:024786200	0.0	W/24786200-24788302	AT1G66450.1  CDS  gene_syn F28G11.17, F28G11_17  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT1G66440.1); Has 1096 Blast hits to 473 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1090; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G66450.1p  transcript_id AT1G66450.1  protein_id AT1G66450.1p  transcript_id AT1G66450.1  
At1g66460	chr1:024791595	0.0	C/24791595-24791988,24791226-24791483,24790962-24791140,24790802-24790881,24790572-24790719,24789894-24790238	AT1G66460.1  CDS  gene_syn F28G11.10, F28G11_10  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G37790.1); Has 85186 Blast hits to 84195 proteins in 2669 species: Archae - 54; Bacteria - 8013; Metazoa - 36182; Fungi - 6985; Plants - 18700; Viruses - 409; Other Eukaryotes - 14843 (source: NCBI BLink).  protein_id AT1G66460.1p  transcript_id AT1G66460.1  protein_id AT1G66460.1p  transcript_id AT1G66460.1  
At1g66470	chr1:024795326	0.0	W/24795326-24795853,24795955-24796059,24796145-24796210,24796291-24796356,24796467-24796598	AT1G66470.1  CDS  gene_syn F28G11.9, F28G11_9  go_process regulation of transcription|GO:0045449||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: mitochondrion; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT5G37800.1); Has 1348 Blast hits to 1340 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 2; Plants - 1310; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G66470.1p  transcript_id AT1G66470.1  protein_id AT1G66470.1p  transcript_id AT1G66470.1  
At1g66475	chr1:024801611	0.0	C/24801611-24801754	AT1G66475.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G66475.1p  transcript_id AT1G66475.1  protein_id AT1G66475.1p  transcript_id AT1G66475.1  
At1g66480	chr1:024806797	0.0	C/24806797-24807405,24805770-24805838	AT1G66480.1  CDS  gene_syn F28G11.8, F28G11_8, PMI2, plastid movement impaired 2  gene PMI2  function Involved in chloroplast avoidance movement under intermediate and high light intensities  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process response to blue light|GO:0009637|16778016|IMP  go_process chloroplast avoidance movement|GO:0009903|16778016|IMP  go_function molecular_function|GO:0003674||ND  product PMI2 (plastid movement impaired 2)  note plastid movement impaired 2 (PMI2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to blue light, N-terminal protein myristoylation, chloroplast avoidance movement; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G37840.1); Has 53 Blast hits to 53 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G66480.1p  transcript_id AT1G66480.1  protein_id AT1G66480.1p  transcript_id AT1G66480.1  
At1g66490	chr1:024810105	0.0	C/24810105-24810549,24809421-24810058	AT1G66490.1  CDS  gene_syn F28G11.7, F28G11_7  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G13680.1); Has 485 Blast hits to 466 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 485; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G66490.1p  transcript_id AT1G66490.1  protein_id AT1G66490.1p  transcript_id AT1G66490.1  
At1g66500	chr1:024811262	0.0	C/24811262-24812512	AT1G66500.1  CDS  gene_syn F28G11.6, F28G11_6  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc finger (C2H2-type) family protein  note zinc finger (C2H2-type) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: S-locus protein-related (TAIR:AT5G43620.1); Has 275 Blast hits to 273 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 91; Fungi - 85; Plants - 35; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT1G66500.1p  transcript_id AT1G66500.1  protein_id AT1G66500.1p  transcript_id AT1G66500.1  
At1g66510	chr1:024812881	0.0	W/24812881-24812976,24813286-24813368,24813483-24813540,24813715-24813774,24813972-24814101,24814220-24814446,24814552-24814644,24814775-24814846,24814942-24814974,24815186-24815317,24815437-24815493,24815571-24815666,24815742-24815804	AT1G66510.1  CDS  gene_syn F28G11.5, F28G11_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product AAR2 protein family  note AAR2 protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: AAR2 (InterPro:IPR007946); Has 235 Blast hits to 228 proteins in 117 species: Archae - 0; Bacteria - 2; Metazoa - 114; Fungi - 60; Plants - 23; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT1G66510.1p  transcript_id AT1G66510.1  protein_id AT1G66510.1p  transcript_id AT1G66510.1  
At1g66510	chr1:024812881	0.0	W/24812881-24812976,24813286-24813368,24813483-24813540,24813715-24813774,24813972-24814101,24814220-24814446,24814552-24814644,24814775-24814846,24814942-24814974,24815186-24815317,24815437-24815493,24815571-24815666,24815742-24815804	AT1G66510.2  CDS  gene_syn F28G11.5, F28G11_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product AAR2 protein family  note AAR2 protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: AAR2 (InterPro:IPR007946); Has 235 Blast hits to 228 proteins in 117 species: Archae - 0; Bacteria - 2; Metazoa - 114; Fungi - 60; Plants - 23; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT1G66510.2p  transcript_id AT1G66510.2  protein_id AT1G66510.2p  transcript_id AT1G66510.2  
At1g66510	chr1:024813322	0.0	W/24813322-24813368,24813483-24813540,24813715-24813774,24813972-24814101,24814220-24814446,24814552-24814644,24814775-24814846,24814942-24814974,24815186-24815317,24815437-24815493,24815571-24815666,24815742-24815804	AT1G66510.3  CDS  gene_syn F28G11.5, F28G11_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product AAR2 protein family  note AAR2 protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: AAR2 (InterPro:IPR007946); Has 217 Blast hits to 214 proteins in 109 species: Archae - 0; Bacteria - 2; Metazoa - 114; Fungi - 45; Plants - 23; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT1G66510.3p  transcript_id AT1G66510.3  protein_id AT1G66510.3p  transcript_id AT1G66510.3  
At1g66520	chr1:024818592	0.0	C/24818592-24818693,24818458-24818520,24817983-24818117,24817771-24817873,24817593-24817663,24817366-24817470,24817250-24817283,24817054-24817154,24816843-24816902,24816572-24816775,24816330-24816419	AT1G66520.1  CDS  gene_syn F28G11.15, F28G11_15, pde194, pigment defective 194  gene pde194  go_process biosynthetic process|GO:0009058||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydroxymethyl-, formyl- and related transferase activity|GO:0016742||IEA  go_process biosynthetic process|GO:0009058||ISS  go_process purine ribonucleotide biosynthetic process|GO:0009152||ISS  go_function formyltetrahydrofolate deformylase activity|GO:0008864||ISS  go_function hydroxymethyl-, formyl- and related transferase activity|GO:0016742||ISS  product pde194 (pigment defective 194); catalytic/ formyltetrahydrofolate deformylase/ hydroxymethyl-, formyl- and related transferase  note pigment defective 194 (pde194); FUNCTIONS IN: hydroxymethyl-, formyl- and related transferase activity, formyltetrahydrofolate deformylase activity, catalytic activity; INVOLVED IN: purine ribonucleotide biosynthetic process, biosynthetic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Formyl transferase, C-terminal (InterPro:IPR005793), Methionine tRNA Formyltransferase-like (InterPro:IPR015518), Formyl transferase, C-terminal-like (InterPro:IPR011034), Formyl transferase, N-terminal (InterPro:IPR002376); Has 12217 Blast hits to 12211 proteins in 1604 species: Archae - 68; Bacteria - 7111; Metazoa - 366; Fungi - 108; Plants - 85; Viruses - 2; Other Eukaryotes - 4477 (source: NCBI BLink).  protein_id AT1G66520.1p  transcript_id AT1G66520.1  protein_id AT1G66520.1p  transcript_id AT1G66520.1  
At1g66530	chr1:024822260	0.0	C/24822260-24822277,24822041-24822171,24821889-24821964,24821701-24821802,24821414-24821629,24821241-24821321,24821029-24821112,24820825-24820929,24820565-24820743,24820401-24820485,24820123-24820309,24819947-24820016,24819746-24819815,24819574-24819663,24819436-24819504,24819254-24819352,24819064-24819174	AT1G66530.1  CDS  gene_syn F28G11.14, F28G11_14  go_component cytoplasm|GO:0005737||IEA  go_process translation|GO:0006412||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_process arginyl-tRNA aminoacylation|GO:0006420||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function arginine-tRNA ligase activity|GO:0004814||IEA  go_function ATP binding|GO:0005524||IEA  go_process arginyl-tRNA aminoacylation|GO:0006420||ISS  go_function arginine-tRNA ligase activity|GO:0004814||ISS  go_function ATP binding|GO:0005524||ISS  product arginyl-tRNA synthetase, putative / arginine--tRNA ligase, putative  note arginyl-tRNA synthetase, putative / arginine--tRNA ligase, putative; FUNCTIONS IN: aminoacyl-tRNA ligase activity, nucleotide binding, arginine-tRNA ligase activity, ATP binding; INVOLVED IN: arginyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), DALR anticodon binding (InterPro:IPR008909), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Arginyl-tRNA synthetase, class Ic, core (InterPro:IPR015945), Arginyl tRNA synthetase, class Ic, N-terminal (InterPro:IPR005148), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Arginyl-tRNA synthetase, class Ic (InterPro:IPR001278); BEST Arabidopsis thaliana protein match is: emb1027 (embryo defective 1027); ATP binding / aminoacyl-tRNA ligase/ arginine-tRNA ligase/ nucleotide binding (TAIR:AT4G26300.1); Has 6538 Blast hits to 6477 proteins in 1602 species: Archae - 156; Bacteria - 2983; Metazoa - 242; Fungi - 116; Plants - 35; Viruses - 3; Other Eukaryotes - 3003 (source: NCBI BLink).  protein_id AT1G66530.1p  transcript_id AT1G66530.1  protein_id AT1G66530.1p  transcript_id AT1G66530.1  
At1g66534	chr1:024823254	0.0	W/24823254-24823667	AT1G66534.1  pseudogenic_transcript  pseudo  function unknown pseudogene  
At1g66540	chr1:024824837	0.0	W/24824837-24824995,24825428-24825814,24825888-24826502	AT1G66540.1  CDS  gene_syn F28G11.4, F28G11_4  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product cytochrome P450, putative  note cytochrome P450, putative; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP81D3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G37340.1); Has 25517 Blast hits to 25456 proteins in 1395 species: Archae - 32; Bacteria - 3643; Metazoa - 10295; Fungi - 4653; Plants - 5523; Viruses - 3; Other Eukaryotes - 1368 (source: NCBI BLink).  protein_id AT1G66540.1p  transcript_id AT1G66540.1  protein_id AT1G66540.1p  transcript_id AT1G66540.1  
At1g66540	chr1:024825446	0.0	W/24825446-24825814,24825888-24826502	AT1G66540.2  CDS  gene_syn F28G11.4, F28G11_4  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product cytochrome P450, putative  note cytochrome P450, putative; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP81D3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G37340.1); Has 25377 Blast hits to 25329 proteins in 1393 species: Archae - 32; Bacteria - 3643; Metazoa - 10289; Fungi - 4653; Plants - 5390; Viruses - 3; Other Eukaryotes - 1367 (source: NCBI BLink).  protein_id AT1G66540.2p  transcript_id AT1G66540.2  protein_id AT1G66540.2p  transcript_id AT1G66540.2  
At1g66550	chr1:024828537	0.0	W/24828537-24828781,24828946-24829083,24829208-24829589	AT1G66550.1  CDS  gene_syn AtWRKY67, F28G11.3, F28G11_3, WRKY67  gene WRKY67  function member of WRKY Transcription Factor; Group III  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY67; transcription factor  note WRKY67; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY64; transcription factor (TAIR:AT1G66560.1); Has 1889 Blast hits to 1624 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1877; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G66550.1p  transcript_id AT1G66550.1  protein_id AT1G66550.1p  transcript_id AT1G66550.1  
At1g66550	chr1:024828537	0.0	W/24828537-24828781,24828961-24829083,24829208-24829589	AT1G66550.2  CDS  gene_syn AtWRKY67, F28G11.3, F28G11_3, WRKY67  gene WRKY67  function member of WRKY Transcription Factor; Group III  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY67; transcription factor  note WRKY67; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY64; transcription factor (TAIR:AT1G66560.1); Has 1890 Blast hits to 1625 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1881; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G66550.2p  transcript_id AT1G66550.2  protein_id AT1G66550.2p  transcript_id AT1G66550.2  
At1g66553	chr1:024831160	0.0	W/24831160-24831270	AT1G66553.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G66553.1p  transcript_id AT1G66553.1  protein_id AT1G66553.1p  transcript_id AT1G66553.1  
At1g66560	chr1:024833579	0.0	W/24833579-24833823,24834011-24834133,24834250-24834631	AT1G66560.1  CDS  gene_syn AtWRKY64, F28G11.2, F28G11_2, WRKY64  gene WRKY64  function member of WRKY Transcription Factor; Group III  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY64; transcription factor  note WRKY64; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY67; transcription factor (TAIR:AT1G66550.2); Has 1903 Blast hits to 1635 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1894; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G66560.1p  transcript_id AT1G66560.1  protein_id AT1G66560.1p  transcript_id AT1G66560.1  
At1g66570	chr1:024836001	0.0	C/24836001-24837242,24835467-24835478	AT1G66570.2  CDS  gene_syn ATSUC7, Sucrose-proton symporter 7, T12I7.2, T12I7_2  gene ATSUC7  go_component integral to plasma membrane|GO:0005887||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process sucrose transport|GO:0015770||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function sucrose:hydrogen symporter activity|GO:0008506||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product ATSUC7 (Sucrose-proton symporter 7); carbohydrate transmembrane transporter/ sucrose:hydrogen symporter/ sugar:hydrogen symporter  note Sucrose-proton symporter 7 (ATSUC7); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, sucrose:hydrogen symporter activity; INVOLVED IN: transport, sucrose transport; LOCATED IN: integral to membrane, integral to plasma membrane, membrane; EXPRESSED IN: sepal, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Sucrose/H+ symporter, plant (InterPro:IPR005989), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ATSUC8 (Sucrose-proton symporter 8); carbohydrate transmembrane transporter/ sucrose:hydrogen symporter/ sugar:hydrogen symporter (TAIR:AT2G14670.1); Has 1410 Blast hits to 1379 proteins in 319 species: Archae - 24; Bacteria - 408; Metazoa - 324; Fungi - 133; Plants - 259; Viruses - 0; Other Eukaryotes - 262 (source: NCBI BLink).  protein_id AT1G66570.2p  transcript_id AT1G66570.2  protein_id AT1G66570.2p  transcript_id AT1G66570.2  
At1g66570	chr1:024836001	0.0	C/24836001-24837242,24835837-24835889,24835403-24835478	AT1G66570.3  CDS  gene_syn ATSUC7, Sucrose-proton symporter 7, T12I7.2, T12I7_2  gene ATSUC7  go_component integral to plasma membrane|GO:0005887||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process sucrose transport|GO:0015770||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function sucrose:hydrogen symporter activity|GO:0008506||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product ATSUC7 (Sucrose-proton symporter 7); carbohydrate transmembrane transporter/ sucrose:hydrogen symporter/ sugar:hydrogen symporter  note Sucrose-proton symporter 7 (ATSUC7); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, sucrose:hydrogen symporter activity; INVOLVED IN: transport, sucrose transport; LOCATED IN: integral to membrane, integral to plasma membrane, membrane; EXPRESSED IN: sepal, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Sucrose/H+ symporter, plant (InterPro:IPR005989), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ATSUC8 (Sucrose-proton symporter 8); carbohydrate transmembrane transporter/ sucrose:hydrogen symporter/ sugar:hydrogen symporter (TAIR:AT2G14670.1); Has 1410 Blast hits to 1379 proteins in 319 species: Archae - 24; Bacteria - 408; Metazoa - 324; Fungi - 133; Plants - 259; Viruses - 0; Other Eukaryotes - 262 (source: NCBI BLink).  protein_id AT1G66570.3p  transcript_id AT1G66570.3  protein_id AT1G66570.3p  transcript_id AT1G66570.3  
At1g66570	chr1:024836001	0.0	C/24836001-24837242,24835837-24835900,24835309-24835478	AT1G66570.1  CDS  gene_syn ATSUC7, Sucrose-proton symporter 7, T12I7.2, T12I7_2  gene ATSUC7  go_component integral to plasma membrane|GO:0005887||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process sucrose transport|GO:0015770||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function sucrose:hydrogen symporter activity|GO:0008506||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product ATSUC7 (Sucrose-proton symporter 7); carbohydrate transmembrane transporter/ sucrose:hydrogen symporter/ sugar:hydrogen symporter  note Sucrose-proton symporter 7 (ATSUC7); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, sucrose:hydrogen symporter activity; INVOLVED IN: transport, sucrose transport; LOCATED IN: integral to membrane, integral to plasma membrane, membrane; EXPRESSED IN: sepal, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Sucrose/H+ symporter, plant (InterPro:IPR005989), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ATSUC8 (Sucrose-proton symporter 8); carbohydrate transmembrane transporter/ sucrose:hydrogen symporter/ sugar:hydrogen symporter (TAIR:AT2G14670.1); Has 1510 Blast hits to 1419 proteins in 330 species: Archae - 24; Bacteria - 440; Metazoa - 374; Fungi - 133; Plants - 263; Viruses - 0; Other Eukaryotes - 276 (source: NCBI BLink).  protein_id AT1G66570.1p  transcript_id AT1G66570.1  protein_id AT1G66570.1p  transcript_id AT1G66570.1  
At1g66580	chr1:024839208	0.0	W/24839208-24839217,24839618-24840119,24840191-24840272,24840368-24840439	AT1G66580.1  CDS  gene_syn T12I7.3, T12I7_3  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L10 (RPL10C)  note 60S ribosomal protein L10 (RPL10C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L10e (InterPro:IPR001197), Ribosomal protein L10e/L16 (InterPro:IPR016180), Ribosomal protein L10e, conserved site (InterPro:IPR018255); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L10 (RPL10B) (TAIR:AT1G26910.1); Has 1313 Blast hits to 1311 proteins in 457 species: Archae - 225; Bacteria - 9; Metazoa - 446; Fungi - 102; Plants - 110; Viruses - 0; Other Eukaryotes - 421 (source: NCBI BLink).  protein_id AT1G66580.1p  transcript_id AT1G66580.1  protein_id AT1G66580.1p  transcript_id AT1G66580.1  
At1g66590	chr1:024841191	0.0	W/24841191-24841200,24841661-24841749,24841837-24841934,24842058-24842157	AT1G66590.1  CDS  gene_syn T12I7.4, T12I7_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product cox19 family protein  note cox19 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625); BEST Arabidopsis thaliana protein match is: cox19 family protein (TAIR:AT1G69750.1); Has 208 Blast hits to 208 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 66; Fungi - 71; Plants - 29; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT1G66590.1p  transcript_id AT1G66590.1  protein_id AT1G66590.1p  transcript_id AT1G66590.1  
At1g66590	chr1:024841606	0.0	W/24841606-24841749,24841837-24841934,24842058-24842157	AT1G66590.2  CDS  gene_syn T12I7.4, T12I7_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product cox19 family protein  note cox19 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625); BEST Arabidopsis thaliana protein match is: cox19 family protein (TAIR:AT1G69750.1); Has 208 Blast hits to 208 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 66; Fungi - 71; Plants - 29; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT1G66590.2p  transcript_id AT1G66590.2  protein_id AT1G66590.2p  transcript_id AT1G66590.2  
At1g66600	chr1:024848406	0.0	W/24848406-24848650,24848737-24848859,24848978-24849335	AT1G66600.1  CDS  gene_syn AtWRKY63, T12I7.5, T12I7_5, WRKY63  gene WRKY63  function member of WRKY Transcription Factor; Group III  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY63; transcription factor  note WRKY63; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY64; transcription factor (TAIR:AT1G66560.1); Has 1856 Blast hits to 1602 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1848; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G66600.1p  transcript_id AT1G66600.1  protein_id AT1G66600.1p  transcript_id AT1G66600.1  
At1g66610	chr1:024851244	0.0	C/24851244-24851450,24850718-24851032,24849716-24850294	AT1G66610.1  CDS  gene_syn T12I7.6, T12I7_6  go_component nucleus|GO:0005634||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_process multicellular organismal development|GO:0007275||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_process multicellular organismal development|GO:0007275||ISS  product seven in absentia (SINA) protein, putative  note seven in absentia (SINA) protein, putative; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Zinc finger, SIAH-type (InterPro:IPR013010), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven in absentia protein (InterPro:IPR004162); BEST Arabidopsis thaliana protein match is: seven in absentia (SINA) protein, putative (TAIR:AT1G66620.1); Has 597 Blast hits to 523 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 300; Fungi - 3; Plants - 277; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G66610.1p  transcript_id AT1G66610.1  protein_id AT1G66610.1p  transcript_id AT1G66610.1  
At1g66620	chr1:024853874	0.0	C/24853874-24854044,24852806-24853576	AT1G66620.1  CDS  gene_syn T12I7.7, T12I7_7  go_component nucleus|GO:0005634||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_process multicellular organismal development|GO:0007275||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_process multicellular organismal development|GO:0007275||ISS  product seven in absentia (SINA) protein, putative  note seven in absentia (SINA) protein, putative; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), TRAF-like (InterPro:IPR008974), Seven in absentia protein, TRAF-like domain (InterPro:IPR018121), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, SIAH-type (InterPro:IPR013010), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven in absentia protein (InterPro:IPR004162); BEST Arabidopsis thaliana protein match is: seven in absentia (SINA) family protein (TAIR:AT1G66630.1); Has 34526 Blast hits to 7282 proteins in 849 species: Archae - 6; Bacteria - 1338; Metazoa - 18701; Fungi - 3093; Plants - 1504; Viruses - 845; Other Eukaryotes - 9039 (source: NCBI BLink).  protein_id AT1G66620.1p  transcript_id AT1G66620.1  protein_id AT1G66620.1p  transcript_id AT1G66620.1  
At1g66630	chr1:024856529	0.0	C/24856529-24856714,24855479-24856204	AT1G66630.1  CDS  gene_syn T12I7.8, T12I7_8  go_component nucleus|GO:0005634||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_process multicellular organismal development|GO:0007275||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_process multicellular organismal development|GO:0007275||ISS  product seven in absentia (SINA) family protein  note seven in absentia (SINA) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: multicellular organismal development, ubiquitin-dependent protein catabolic process, protein ubiquitination; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), TRAF-like (InterPro:IPR008974), Seven in absentia protein, TRAF-like domain (InterPro:IPR018121), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, SIAH-type (InterPro:IPR013010), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven in absentia protein (InterPro:IPR004162); BEST Arabidopsis thaliana protein match is: seven in absentia (SINA) protein, putative (TAIR:AT1G66620.1); Has 1314 Blast hits to 1308 proteins in 637 species: Archae - 0; Bacteria - 0; Metazoa - 1003; Fungi - 18; Plants - 237; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT1G66630.1p  transcript_id AT1G66630.1  protein_id AT1G66630.1p  transcript_id AT1G66630.1  
At1g66640	chr1:024857438	0.0	W/24857438-24857527,24857605-24858222,24858268-24858408,24858506-24858646,24858751-24859011	AT1G66640.1  CDS  gene_syn T12I7.9, T12I7_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G66320.1); Has 584 Blast hits to 578 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 584; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G66640.1p  transcript_id AT1G66640.1  protein_id AT1G66640.1p  transcript_id AT1G66640.1  
At1g66650	chr1:024861525	0.0	C/24861525-24861821,24860113-24860805	AT1G66650.1  CDS  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_process multicellular organismal development|GO:0007275||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_process multicellular organismal development|GO:0007275||ISS  product seven in absentia (SINA) protein, putative  note seven in absentia (SINA) protein, putative; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, RING-type, conserved site (InterPro:IPR017907), TRAF-like (InterPro:IPR008974), Seven in absentia protein, TRAF-like domain (InterPro:IPR018121), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, SIAH-type (InterPro:IPR013010), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven in absentia protein (InterPro:IPR004162); BEST Arabidopsis thaliana protein match is: seven in absentia (SINA) family protein (TAIR:AT5G37930.1); Has 1175 Blast hits to 1172 proteins in 622 species: Archae - 0; Bacteria - 0; Metazoa - 902; Fungi - 2; Plants - 232; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT1G66650.1p  transcript_id AT1G66650.1  protein_id AT1G66650.1p  transcript_id AT1G66650.1  
At1g66660	chr1:024862976	0.0	C/24862976-24863028,24862056-24862677	AT1G66660.1  CDS  gene_syn F4N21.20, F4N21_20  go_component nucleus|GO:0005634||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_process multicellular organismal development|GO:0007275||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_process multicellular organismal development|GO:0007275||ISS  product seven in absentia (SINA) protein, putative  note seven in absentia (SINA) protein, putative; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Seven in absentia protein, TRAF-like domain (InterPro:IPR018121), Zinc finger, SIAH-type (InterPro:IPR013010), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven in absentia protein (InterPro:IPR004162); BEST Arabidopsis thaliana protein match is: seven in absentia (SINA) protein, putative (TAIR:AT1G66650.1); Has 1013 Blast hits to 1012 proteins in 608 species: Archae - 0; Bacteria - 0; Metazoa - 788; Fungi - 0; Plants - 221; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G66660.1p  transcript_id AT1G66660.1  protein_id AT1G66660.1p  transcript_id AT1G66660.1  
At1g66660	chr1:024862976	0.0	C/24862976-24863332,24862056-24862745	AT1G66660.2  CDS  gene_syn F4N21.20, F4N21_20  go_component nucleus|GO:0005634||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_process multicellular organismal development|GO:0007275||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_process multicellular organismal development|GO:0007275||ISS  product seven in absentia (SINA) protein, putative  note seven in absentia (SINA) protein, putative; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: multicellular organismal development, ubiquitin-dependent protein catabolic process, protein ubiquitination; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Seven in absentia protein, TRAF-like domain (InterPro:IPR018121), Zinc finger, SIAH-type (InterPro:IPR013010), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven in absentia protein (InterPro:IPR004162); BEST Arabidopsis thaliana protein match is: seven in absentia (SINA) protein, putative (TAIR:AT1G66650.1); Has 20347 Blast hits to 8550 proteins in 946 species: Archae - 39; Bacteria - 412; Metazoa - 11708; Fungi - 1422; Plants - 838; Viruses - 569; Other Eukaryotes - 5359 (source: NCBI BLink).  protein_id AT1G66660.2p  transcript_id AT1G66660.2  protein_id AT1G66660.2p  transcript_id AT1G66660.2  
At1g66670	chr1:024865344	0.0	C/24865344-24865646,24864755-24864869,24864506-24864681,24864315-24864410,24863995-24864234	AT1G66670.1  CDS  gene_syn CLPP3, F4N21.19, F4N21_19, NCLPP3  gene CLPP3  function One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastid stroma|GO:0009532|14593120|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process proteolysis|GO:0006508||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_component chloroplast thylakoid|GO:0009534|11278690|IDA  go_component chloroplast stroma|GO:0009570|11278690|IDA  go_component chloroplastic endopeptidase Clp complex|GO:0009840|11278690|IDA  product CLPP3; serine-type endopeptidase  note CLPP3; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLPP4 (CLP PROTEASE P4); serine-type endopeptidase (TAIR:AT5G45390.1); Has 9100 Blast hits to 9098 proteins in 1701 species: Archae - 6; Bacteria - 4614; Metazoa - 115; Fungi - 50; Plants - 686; Viruses - 82; Other Eukaryotes - 3547 (source: NCBI BLink).  protein_id AT1G66670.1p  transcript_id AT1G66670.1  protein_id AT1G66670.1p  transcript_id AT1G66670.1  
At1g66680	chr1:024868647	0.0	C/24868647-24868888,24868358-24868486,24868075-24868275,24867334-24867430,24866939-24867042,24866775-24866826,24866352-24866603	AT1G66680.1  CDS  gene_syn AR401, F4N21.18, F4N21_18  gene AR401  function unknown function  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  product AR401  note AR401; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 12 (InterPro:IPR013217); BEST Arabidopsis thaliana protein match is: catalytic/ methyltransferase (TAIR:AT3G60910.1); Has 702 Blast hits to 701 proteins in 237 species: Archae - 12; Bacteria - 185; Metazoa - 148; Fungi - 93; Plants - 66; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink).  protein_id AT1G66680.1p  transcript_id AT1G66680.1  protein_id AT1G66680.1p  transcript_id AT1G66680.1  
At1g66690	chr1:024870724	0.0	C/24870724-24870798,24869972-24870625,24869554-24869886	AT1G66690.1  CDS  gene_syn F4N21.17, F4N21_17  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757||ISS  product S-adenosyl-L-methionine:carboxyl methyltransferase family protein  note S-adenosyl-L-methionine:carboxyl methyltransferase family protein; FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: PXMT1; S-adenosylmethionine-dependent methyltransferase (TAIR:AT1G66700.1); Has 541 Blast hits to 536 proteins in 88 species: Archae - 0; Bacteria - 31; Metazoa - 8; Fungi - 3; Plants - 435; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT1G66690.1p  transcript_id AT1G66690.1  protein_id AT1G66690.1p  transcript_id AT1G66690.1  
At1g66700	chr1:024874616	0.0	C/24874616-24874690,24873826-24874530	AT1G66700.3  CDS  gene_syn F4N21.16, F4N21_16, PXMT1  gene PXMT1  function A member of the Arabidopsis SABATH methyltransferase gene family. Encodes PXMT1, a methyltransferase that methylates 1,7-paraxanthine.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757||IDA  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757||ISS  product PXMT1; S-adenosylmethionine-dependent methyltransferase  note PXMT1; FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine:carboxyl methyltransferase family protein (TAIR:AT1G66690.1); Has 533 Blast hits to 530 proteins in 90 species: Archae - 0; Bacteria - 36; Metazoa - 10; Fungi - 3; Plants - 403; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).  protein_id AT1G66700.3p  transcript_id AT1G66700.3  protein_id AT1G66700.3p  transcript_id AT1G66700.3  
At1g66700	chr1:024874616	0.0	C/24874616-24874690,24873877-24874530,24873460-24873792	AT1G66700.1  CDS  gene_syn F4N21.16, F4N21_16, PXMT1  gene PXMT1  function A member of the Arabidopsis SABATH methyltransferase gene family. Encodes PXMT1, a methyltransferase that methylates 1,7-paraxanthine.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757||IDA  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757||ISS  product PXMT1; S-adenosylmethionine-dependent methyltransferase  note PXMT1; FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine:carboxyl methyltransferase family protein (TAIR:AT1G66690.1); Has 567 Blast hits to 562 proteins in 90 species: Archae - 0; Bacteria - 36; Metazoa - 12; Fungi - 3; Plants - 433; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT1G66700.1p  transcript_id AT1G66700.1  protein_id AT1G66700.1p  transcript_id AT1G66700.1  
At1g66710	chr1:024878865	0.0	C/24878865-24880220	AT1G66710.1  pseudogenic_transcript  pseudo  gene_syn F4N21.24  note pseudogene, similar to AtPP protein, blastp match of 55% identity and 1.0e-92 P-value to GP|7657877|emb|CAB89183.1||AJ245479 AtPP protein {Brassica napus var. napus}  
At1g66720	chr1:024881236	0.0	W/24881236-24881310,24881403-24882056,24882151-24882480	AT1G66720.1  CDS  gene_syn F4N21.15, F4N21_15  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757||ISS  product S-adenosyl-L-methionine:carboxyl methyltransferase family protein  note S-adenosyl-L-methionine:carboxyl methyltransferase family protein; FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: PXMT1; S-adenosylmethionine-dependent methyltransferase (TAIR:AT1G66700.1); Has 549 Blast hits to 546 proteins in 88 species: Archae - 0; Bacteria - 33; Metazoa - 12; Fungi - 3; Plants - 434; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT1G66720.1p  transcript_id AT1G66720.1  protein_id AT1G66720.1p  transcript_id AT1G66720.1  
At1g66725	chr1:024883931	0.0	W/24883931-24884559	AT1G66725.1  miRNA  gene_syn MICRORNA 163, MIR163  gene MIR163  function Encodes a microRNA that targets several SAMT family members. miR163, is highly expressed in A. thaliana diploids but down-regulated in A. thaliana autotetraploids and repressed in A. arenosa and A. suecica. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGAAGAGGACUUGGAACUUCGAU  go_component cellular_component|GO:0005575||ND  go_process gene silencing by miRNA|GO:0035195|15314213|TAS  go_function molecular_function|GO:0003674||ND  product MIR163 (MICRORNA 163); miRNA  transcript_id AT1G66725.1  
At1g66730	chr1:024884991	0.0	W/24884991-24887259,24887435-24887552,24887644-24887725,24887811-24887913,24888016-24888112,24888399-24888501,24888579-24888710,24888833-24888880,24889194-24889291,24889382-24889447,24889692-24889851,24890027-24890134,24890352-24890401,24890494-24890528,24890634-24890707,24890803-24890964,24891044-24891132,24891264-24891414,24891515-24891823	AT1G66730.1  CDS  gene_syn F4N21.14, F4N21_14  go_component chloroplast|GO:0009507||IEA  go_process DNA replication|GO:0006260||IEA  go_process DNA repair|GO:0006281||IEA  go_process DNA recombination|GO:0006310||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA ligase (ATP) activity|GO:0003910||IEA  go_function ATP binding|GO:0005524||IEA  go_process DNA replication|GO:0006260||ISS  go_process DNA repair|GO:0006281||ISS  go_process DNA recombination|GO:0006310||ISS  go_function DNA ligase (ATP) activity|GO:0003910||ISS  go_function ATP binding|GO:0005524||ISS  product ATP dependent DNA ligase family protein  note ATP dependent DNA ligase family protein; FUNCTIONS IN: DNA binding, DNA ligase (ATP) activity, ATP binding; INVOLVED IN: DNA repair, DNA replication, DNA recombination; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA ligase, N-terminal (InterPro:IPR012308), ATP dependent DNA ligase, central (InterPro:IPR012310), ATP-dependent DNA ligase, conserved site (InterPro:IPR016059), DNA repair metallo-beta-lactamase (InterPro:IPR011084), ATP dependent DNA ligase, C-terminal (InterPro:IPR012309), ATP-dependent DNA ligase (InterPro:IPR000977); BEST Arabidopsis thaliana protein match is: ATLIG1 (ARABIDOPSIS THALIANA DNA LIGASE 1); ATP binding / DNA binding / DNA ligase (ATP) (TAIR:AT1G08130.1); Has 3133 Blast hits to 3071 proteins in 628 species: Archae - 227; Bacteria - 996; Metazoa - 564; Fungi - 431; Plants - 130; Viruses - 148; Other Eukaryotes - 637 (source: NCBI BLink).  protein_id AT1G66730.1p  transcript_id AT1G66730.1  protein_id AT1G66730.1p  transcript_id AT1G66730.1  
At1g66740	chr1:024892586	0.0	W/24892586-24892694,24892994-24893109,24893183-24893548	AT1G66740.1  CDS  gene_syn ANTI- SILENCING FUNCTION 1A, ASF1A, AtSP7, F4N21.13, F4N21_13, SGA2, SP7  gene SGA2  function Located on the SSL2 region of Arabidopsis thaliana, which is homeologous to the Brassica S locus for self incompatibility. Expressed in both vegetative and reproductive organs suggesting AtSP7 might not be involved in self incompatibility.  go_component nucleus|GO:0005634||IEA  go_component endomembrane system|GO:0012505||IEA  go_process chromatin assembly or disassembly|GO:0006333||IEA  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||ISS  go_function molecular_function|GO:0003674||ND  product SGA2  note SGA2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: chromatin assembly or disassembly, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone chaperone, ASF1-like (InterPro:IPR006818); BEST Arabidopsis thaliana protein match is: ASF1B (ANTI- SILENCING FUNCTION 1B) (TAIR:AT5G38110.1); Has 453 Blast hits to 453 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 189; Fungi - 122; Plants - 45; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).  protein_id AT1G66740.1p  transcript_id AT1G66740.1  protein_id AT1G66740.1p  transcript_id AT1G66740.1  
At1g66750	chr1:024894775	0.0	W/24894775-24894876,24894963-24895261,24895337-24895445,24896328-24896453,24896529-24896764,24896841-24897015	AT1G66750.1  CDS  gene_syn AT;CDKD;2, CAK4, CAK4AT, CDK-ACTIVATING KINASE 4, CDKD1;2, CDKD;2, CYCLIN-DEPENDENT KINASE D1;2, F4N21.12, F4N21_12  gene CAK4  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process regulation of cyclin-dependent protein kinase activity|GO:0000079|16024551|TAS  go_function protein serine/threonine kinase activity|GO:0004674|16024551|TAS  go_function protein binding|GO:0005515|12527363|IPI  go_function protein binding|GO:0005515|17426018|IPI  go_function kinase activity|GO:0016301||ISS  product CAK4 (CDK-ACTIVATING KINASE 4); kinase/ protein binding / protein serine/threonine kinase  note CDK-ACTIVATING KINASE 4 (CAK4); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, kinase activity; INVOLVED IN: regulation of cyclin-dependent protein kinase activity; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CDKD1;1 (CYCLIN-DEPENDENT KINASE D1;1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT1G73690.1); Has 90461 Blast hits to 89372 proteins in 3125 species: Archae - 47; Bacteria - 7771; Metazoa - 39401; Fungi - 8258; Plants - 17633; Viruses - 374; Other Eukaryotes - 16977 (source: NCBI BLink).  protein_id AT1G66750.1p  transcript_id AT1G66750.1  protein_id AT1G66750.1p  transcript_id AT1G66750.1  
At1g66760	chr1:024902110	0.0	W/24902110-24902358,24902437-24902981,24903178-24903264,24903351-24903407,24903501-24903739,24903831-24904036,24904148-24904213	AT1G66760.2  CDS  gene_syn F4N21.11, F4N21_11  go_component membrane|GO:0016020||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_process response to wounding|GO:0009611|17675405|IEP  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transporter activity, transporter activity; INVOLVED IN: response to wounding; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G66780.1); Has 6059 Blast hits to 5933 proteins in 1099 species: Archae - 121; Bacteria - 3960; Metazoa - 125; Fungi - 208; Plants - 685; Viruses - 0; Other Eukaryotes - 960 (source: NCBI BLink).  protein_id AT1G66760.2p  transcript_id AT1G66760.2  protein_id AT1G66760.2p  transcript_id AT1G66760.2  
At1g66760	chr1:024902110	0.0	W/24902110-24902358,24902437-24902981,24903178-24903264,24903351-24903407,24903501-24903739,24903831-24904054	AT1G66760.1  CDS  gene_syn F4N21.11, F4N21_11  go_component membrane|GO:0016020||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_process response to wounding|GO:0009611|17675405|IEP  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transporter activity, transporter activity; INVOLVED IN: response to wounding; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G66780.1); Has 6062 Blast hits to 5933 proteins in 1098 species: Archae - 123; Bacteria - 3963; Metazoa - 125; Fungi - 208; Plants - 683; Viruses - 0; Other Eukaryotes - 960 (source: NCBI BLink).  protein_id AT1G66760.1p  transcript_id AT1G66760.1  protein_id AT1G66760.1p  transcript_id AT1G66760.1  
At1g66770	chr1:024906451	0.0	C/24906451-24907236	AT1G66770.1  CDS  gene_syn F4N21.10, F4N21_10  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  product nodulin MtN3 family protein  note nodulin MtN3 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: MtN3 and saliva related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), MtN3 and saliva related transmembrane protein (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: nodulin MtN3 family protein (TAIR:AT4G10850.1); Has 514 Blast hits to 509 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 165; Fungi - 0; Plants - 296; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT1G66770.1p  transcript_id AT1G66770.1  protein_id AT1G66770.1p  transcript_id AT1G66770.1  
At1g66780	chr1:024909213	0.0	W/24909213-24909482,24909760-24910304,24910439-24910525,24910618-24910674,24910766-24911004,24911140-24911345,24911432-24911485	AT1G66780.1  CDS  gene_syn F4N21.9, F4N21_9  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: drug transporter activity, antiporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G64820.1); Has 5298 Blast hits to 5232 proteins in 1062 species: Archae - 91; Bacteria - 3342; Metazoa - 125; Fungi - 208; Plants - 701; Viruses - 0; Other Eukaryotes - 831 (source: NCBI BLink).  protein_id AT1G66780.1p  transcript_id AT1G66780.1  protein_id AT1G66780.1p  transcript_id AT1G66780.1  
At1g66783	chr1:024913206	0.0	C/24913206-24913296	AT1G66783.1  miRNA  gene_syn MICRORNA 157A, MIR157A  gene MIR157A  function Encodes a microRNA that targets several SPL family members, including SPL3,4, and 5. By regulating the expression of SPL3 (and probably also SPL4 and SPL5), this microRNA regulates vegetative phase change. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGACAGAAGAUAGAGAGCAC  go_component cellular_component|GO:0005575||ND  go_process gene silencing by miRNA|GO:0035195|15200956|TAS  go_function molecular_function|GO:0003674||ND  product MIR157A (MICRORNA 157A); miRNA  transcript_id AT1G66783.1  
At1g66790	chr1:024918275	0.0	C/24918275-24918356,24918012-24918112	AT1G66790.1  CDS  gene_syn F4N21.8, F4N21_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50674.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G66790.1p  transcript_id AT1G66790.1  protein_id AT1G66790.1p  transcript_id AT1G66790.1  
At1g66795	chr1:024921104	0.0	W/24921104-24921194	AT1G66795.1  miRNA  gene_syn MICRORNA 157B, MIR157B  gene MIR157B  function Encodes a microRNA that targets several SPL family members, including SPL3,4, and 5. By regulating the expression of SPL3 (and probably also SPL4 and SPL5), this microRNA regulates vegetative phase change. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGACAGAAGAUAGAGAGCAC  go_component cellular_component|GO:0005575||ND  go_process gene silencing by miRNA|GO:0035195|15200956|TAS  go_function molecular_function|GO:0003674||ND  product MIR157B (MICRORNA 157B); miRNA  transcript_id AT1G66795.1  
At1g66800	chr1:024924854	0.0	W/24924854-24924971,24925128-24925297,24925387-24925566,24925665-24926014,24926097-24926238	AT1G66800.1  CDS  gene_syn F4N21.7, F4N21_7  function similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_component cellular_component|GO:0005575||ND  go_process lignin biosynthetic process|GO:0009809||ISS  go_function alcohol dehydrogenase activity|GO:0004022|14745009|ISS  go_function cinnamyl-alcohol dehydrogenase activity|GO:0045551||ISS  product cinnamyl-alcohol dehydrogenase family / CAD family  note cinnamyl-alcohol dehydrogenase family / CAD family; FUNCTIONS IN: alcohol dehydrogenase activity, cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, hypocotyl, root, pollen tube; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamyl-alcohol dehydrogenase family / CAD family (TAIR:AT1G09490.1); Has 8300 Blast hits to 8289 proteins in 1275 species: Archae - 147; Bacteria - 3179; Metazoa - 372; Fungi - 604; Plants - 1413; Viruses - 56; Other Eukaryotes - 2529 (source: NCBI BLink).  protein_id AT1G66800.1p  transcript_id AT1G66800.1  protein_id AT1G66800.1p  transcript_id AT1G66800.1  
At1g66810	chr1:024928008	0.0	C/24928008-24928619,24927613-24927933	AT1G66810.1  CDS  gene_syn F4N21.6, F4N21_6  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc finger (CCCH-type) family protein  note zinc finger (CCCH-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein (TAIR:AT1G68200.2); Has 729 Blast hits to 673 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 344; Fungi - 71; Plants - 103; Viruses - 0; Other Eukaryotes - 211 (source: NCBI BLink).  protein_id AT1G66810.1p  transcript_id AT1G66810.1  protein_id AT1G66810.1p  transcript_id AT1G66810.1  
At1g66820	chr1:024930093	0.0	W/24930093-24930422	AT1G66820.1  CDS  gene_syn F4N21.5, F4N21_5  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 4695 Blast hits to 1095 proteins in 171 species: Archae - 18; Bacteria - 305; Metazoa - 2068; Fungi - 95; Plants - 1647; Viruses - 112; Other Eukaryotes - 450 (source: NCBI BLink).  protein_id AT1G66820.1p  transcript_id AT1G66820.1  protein_id AT1G66820.1p  transcript_id AT1G66820.1  
At1g66830	chr1:024931385	0.0	C/24931385-24932834,24930700-24931307	AT1G66830.1  CDS  gene_syn F4N21.23, F4N21_23  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: stem, sepal, hypocotyl, leaf; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT2G01210.1); Has 81084 Blast hits to 57553 proteins in 1664 species: Archae - 44; Bacteria - 4354; Metazoa - 27068; Fungi - 3341; Plants - 37108; Viruses - 154; Other Eukaryotes - 9015 (source: NCBI BLink).  protein_id AT1G66830.1p  transcript_id AT1G66830.1  protein_id AT1G66830.1p  transcript_id AT1G66830.1  
At1g66840	chr1:024936030	0.0	C/24936030-24936116,24933998-24935734	AT1G66840.1  CDS  gene_syn F4N21.22, F4N21_22  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: PMI15 (plastid movement impaired 15) (TAIR:AT5G38150.1); Has 66436 Blast hits to 37670 proteins in 1596 species: Archae - 890; Bacteria - 7464; Metazoa - 33216; Fungi - 4897; Plants - 2570; Viruses - 192; Other Eukaryotes - 17207 (source: NCBI BLink).  protein_id AT1G66840.1p  transcript_id AT1G66840.1  protein_id AT1G66840.1p  transcript_id AT1G66840.1  
At1g66850	chr1:024936985	0.0	W/24936985-24937293	AT1G66850.1  CDS  gene_syn F4N21.4, F4N21_4  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT5G38160.1); Has 198 Blast hits to 195 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 198; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G66850.1p  transcript_id AT1G66850.1  protein_id AT1G66850.1p  transcript_id AT1G66850.1  
At1g66852	chr1:024938500	0.0	C/24938500-24938832	AT1G66852.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family protein 17 (TAIR:AT1G66870.1); Has 719 Blast hits to 683 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 719; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G66852.1p  transcript_id AT1G66852.1  protein_id AT1G66852.1p  transcript_id AT1G66852.1  
At1g66855	chr1:024939676	0.0	C/24939676-24940011	AT1G66855.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family protein 17 (TAIR:AT1G66870.1); Has 726 Blast hits to 690 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 726; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G66855.1p  transcript_id AT1G66855.1  protein_id AT1G66855.1p  transcript_id AT1G66855.1  
At1g66860	chr1:024942240	0.0	W/24942240-24942339,24942442-24942755,24942942-24943358,24943510-24943719,24944092-24944352	AT1G66860.1  CDS  gene_syn F4N21.3, F4N21_3  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process glutamine metabolic process|GO:0006541||IEA  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  product hydrolase  note hydrolase; FUNCTIONS IN: hydrolase activity; INVOLVED IN: glutamine metabolic process, N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase C26 (InterPro:IPR011697), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: hydrolase (TAIR:AT5G38200.1); Has 2123 Blast hits to 2122 proteins in 592 species: Archae - 10; Bacteria - 1462; Metazoa - 0; Fungi - 2; Plants - 28; Viruses - 0; Other Eukaryotes - 621 (source: NCBI BLink).  protein_id AT1G66860.1p  transcript_id AT1G66860.1  protein_id AT1G66860.1p  transcript_id AT1G66860.1  
At1g66870	chr1:024945542	0.0	C/24945542-24945877	AT1G66870.1  CDS  gene_syn F4N21.2, F4N21_2  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycosyl hydrolase family protein 17  note glycosyl hydrolase family protein 17; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G66852.1); Has 783 Blast hits to 747 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 14; Plants - 769; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G66870.1p  transcript_id AT1G66870.1  protein_id AT1G66870.1p  transcript_id AT1G66870.1  
At1g66880	chr1:024946928	0.0	W/24946928-24947002,24948886-24949495,24950292-24950846,24951435-24952058,24952952-24953677,24953892-24953921,24954021-24954350,24954432-24954737,24954804-24955438	AT1G66880.1  CDS  gene_syn F4N21.1, F4N21_1  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function protein serine/threonine kinase activity|GO:0004674||ISS  product serine/threonine protein kinase family protein  note serine/threonine protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase family protein (TAIR:AT5G38210.1); Has 93689 Blast hits to 92153 proteins in 3446 species: Archae - 57; Bacteria - 8296; Metazoa - 40701; Fungi - 7646; Plants - 19970; Viruses - 581; Other Eukaryotes - 16438 (source: NCBI BLink).  protein_id AT1G66880.1p  transcript_id AT1G66880.1  protein_id AT1G66880.1p  transcript_id AT1G66880.1  
At1g66890	chr1:024957614	0.0	W/24957614-24958090	AT1G66890.1  CDS  gene_syn T4O24.4, T4O24_4  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: 50S ribosomal protein-related (TAIR:AT5G16200.1); Has 14 Blast hits to 14 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G66890.1p  transcript_id AT1G66890.1  protein_id AT1G66890.1p  transcript_id AT1G66890.1  
At1g66900	chr1:024959552	0.0	W/24959552-24959856,24960485-24960521,24960610-24960846,24960922-24960969,24961064-24961255	AT1G66900.1  CDS  gene_syn T4O24.3, T4O24_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: hydrolase (TAIR:AT5G38220.3); Has 2819 Blast hits to 2817 proteins in 490 species: Archae - 0; Bacteria - 727; Metazoa - 524; Fungi - 119; Plants - 148; Viruses - 6; Other Eukaryotes - 1295 (source: NCBI BLink).  protein_id AT1G66900.1p  transcript_id AT1G66900.1  protein_id AT1G66900.1p  transcript_id AT1G66900.1  
At1g66910	chr1:024963131	0.0	C/24963131-24963941,24961634-24962823	AT1G66910.1  CDS  gene_syn T4O24.8, T4O24_8  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase family protein (TAIR:AT1G66930.1); Has 82479 Blast hits to 81215 proteins in 3110 species: Archae - 75; Bacteria - 6924; Metazoa - 36781; Fungi - 6400; Plants - 18388; Viruses - 301; Other Eukaryotes - 13610 (source: NCBI BLink).  protein_id AT1G66910.1p  transcript_id AT1G66910.1  protein_id AT1G66910.1p  transcript_id AT1G66910.1  
At1g66920	chr1:024966724	0.0	C/24966724-24967432,24965410-24966530	AT1G66920.1  CDS  gene_syn T4O24.7, T4O24_7  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product serine/threonine protein kinase, putative  note serine/threonine protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT1G66910.1); Has 81555 Blast hits to 80349 proteins in 3025 species: Archae - 74; Bacteria - 6827; Metazoa - 36198; Fungi - 6363; Plants - 18308; Viruses - 264; Other Eukaryotes - 13521 (source: NCBI BLink).  protein_id AT1G66920.1p  transcript_id AT1G66920.1  protein_id AT1G66920.1p  transcript_id AT1G66920.1  
At1g66930	chr1:024970523	0.0	W/24970523-24970712,24970863-24971513,24971799-24971825,24971913-24973069	AT1G66930.1  CDS  gene_syn T4O24.2  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product serine/threonine protein kinase family protein  note serine/threonine protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT1G67000.1); Has 85221 Blast hits to 83970 proteins in 3159 species: Archae - 75; Bacteria - 7164; Metazoa - 37987; Fungi - 6777; Plants - 18536; Viruses - 358; Other Eukaryotes - 14324 (source: NCBI BLink).  protein_id AT1G66930.1p  transcript_id AT1G66930.1  protein_id AT1G66930.1p  transcript_id AT1G66930.1  
At1g66940	chr1:024973979	0.0	C/24973979-24974684,24973596-24973819	AT1G66940.2  CDS  gene_syn T4O24.1, T4O24_1  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product protein kinase-related  note protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT1G67000.1); Has 139 Blast hits to 117 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G66940.2p  transcript_id AT1G66940.2  protein_id AT1G66940.2p  transcript_id AT1G66940.2  
At1g66940	chr1:024973979	0.0	C/24973979-24974684,24973596-24973819	AT1G66940.3  CDS  gene_syn T4O24.1, T4O24_1  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product protein kinase-related  note protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT1G67000.1); Has 139 Blast hits to 117 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G66940.3p  transcript_id AT1G66940.3  protein_id AT1G66940.3p  transcript_id AT1G66940.3  
At1g66940	chr1:024973979	0.0	C/24973979-24974684,24973730-24973819,24973579-24973602,24973465-24973491,24973201-24973352	AT1G66940.1  CDS  gene_syn T4O24.1, T4O24_1  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product protein kinase-related  note protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT1G67000.1); Has 144 Blast hits to 122 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 140; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G66940.1p  transcript_id AT1G66940.1  protein_id AT1G66940.1p  transcript_id AT1G66940.1  
At1g66950	chr1:024978239	0.0	W/24978239-24978633,24978771-24978891,24979111-24979199,24979316-24979400,24979469-24979759,24979842-24979932,24980029-24980929,24981025-24981185,24981304-24981407,24981488-24981653,24981740-24981814,24981884-24982002,24982094-24982426,24982527-24982817,24982897-24982980,24983056-24983189,24983267-24983494,24983570-24983741,24983850-24984104,24984192-24984461	AT1G66950.1  CDS  gene_syn ATPDR11, PDR11, PLEIOTROPIC DRUG RESISTANCE 11, T4O24.9, T4O24_9  gene PDR11  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855|16506311|ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product PDR11 (PLEIOTROPIC DRUG RESISTANCE 11); ATPase, coupled to transmembrane movement of substances  note PLEIOTROPIC DRUG RESISTANCE 11 (PDR11); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: multidrug transport; LOCATED IN: membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PDR6; ATPase, coupled to transmembrane movement of substances (TAIR:AT2G36380.1); Has 206040 Blast hits to 157537 proteins in 2496 species: Archae - 4353; Bacteria - 146847; Metazoa - 7866; Fungi - 4096; Plants - 2882; Viruses - 4; Other Eukaryotes - 39992 (source: NCBI BLink).  protein_id AT1G66950.1p  transcript_id AT1G66950.1  protein_id AT1G66950.1p  transcript_id AT1G66950.1  
At1g66960	chr1:024989461	0.0	C/24989461-24989664,24988876-24989061,24988515-24988604,24988216-24988413,24988043-24988127,24987775-24987941,24987518-24987709,24987321-24987434,24986919-24987038,24986721-24986843,24986536-24986634,24986393-24986449,24986103-24986293,24985829-24986006,24985653-24985733,24985441-24985524,24985155-24985277	AT1G66960.1  CDS  gene_syn F1O19.4, F1O19_4  go_process pentacyclic triterpenoid biosynthetic process|GO:0019745||ISS  go_function lupeol synthase activity|GO:0042299|9883589|ISS  product lupeol synthase, putative / 2,3-oxidosqualene-triterpenoid cyclase, putative  note lupeol synthase, putative / 2,3-oxidosqualene-triterpenoid cyclase, putative; FUNCTIONS IN: lupeol synthase activity; INVOLVED IN: pentacyclic triterpenoid biosynthetic process; EXPRESSED IN: stem, petal, inflorescence meristem, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Terpene synthase, conserved site (InterPro:IPR002365), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Squalene cyclase (InterPro:IPR018333), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: ATLUP2; beta-amyrin synthase/ lupeol synthase (TAIR:AT1G78960.1); Has 1407 Blast hits to 1298 proteins in 363 species: Archae - 0; Bacteria - 587; Metazoa - 109; Fungi - 166; Plants - 341; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink).  protein_id AT1G66960.1p  transcript_id AT1G66960.1  protein_id AT1G66960.1p  transcript_id AT1G66960.1  
At1g66970	chr1:024995867	0.0	C/24995867-24996005,24995315-24995608,24994586-24995203,24994462-24994500,24994075-24994359,24993695-24993837,24993133-24993619,24992746-24993032	AT1G66970.1  CDS  gene_syn F1O19.5, F1O19_5, SHV3-LIKE 2, SVL2  gene SVL2  go_component chloroplast|GO:0009507|18431481|IDA  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process glycerol metabolic process|GO:0006071||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process glycerol metabolic process|GO:0006071||ISS  go_function glycerophosphodiester phosphodiesterase activity|GO:0008889||ISS  go_function kinase activity|GO:0016301||ISS  product SVL2 (SHV3-LIKE 2); glycerophosphodiester phosphodiesterase/ kinase  note SHV3-LIKE 2 (SVL2); FUNCTIONS IN: kinase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: anchored to plasma membrane, apoplast, chloroplast, anchored to membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: protein kinase family protein / glycerophosphoryl diester phosphodiesterase family protein (TAIR:AT1G66980.1); Has 1038 Blast hits to 690 proteins in 230 species: Archae - 0; Bacteria - 779; Metazoa - 8; Fungi - 0; Plants - 184; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT1G66970.1p  transcript_id AT1G66970.1  protein_id AT1G66970.1p  transcript_id AT1G66970.1  
At1g66980	chr1:025001820	0.0	C/25001820-25001961,25001325-25001624,25000601-25001218,25000469-25000507,25000097-25000381,24999677-24999819,24999097-24999580,24998795-24999013,24997491-24998590	AT1G66980.1  CDS  gene_syn F1O19.6, F1O19_6  go_process glycerol metabolic process|GO:0006071||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_process glycerol metabolic process|GO:0006071||ISS  go_function glycerophosphodiester phosphodiesterase activity|GO:0008889||ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein / glycerophosphoryl diester phosphodiesterase family protein  note protein kinase family protein / glycerophosphoryl diester phosphodiesterase family protein; FUNCTIONS IN: kinase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: protein amino acid phosphorylation, glycerol metabolic process, lipid metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: SVL2 (SHV3-LIKE 2); glycerophosphodiester phosphodiesterase/ kinase (TAIR:AT1G66970.1); Has 83198 Blast hits to 81593 proteins in 3160 species: Archae - 72; Bacteria - 7405; Metazoa - 36840; Fungi - 6415; Plants - 18473; Viruses - 266; Other Eukaryotes - 13727 (source: NCBI BLink).  protein_id AT1G66980.1p  transcript_id AT1G66980.1  protein_id AT1G66980.1p  transcript_id AT1G66980.1  
At1g66990	chr1:025002644	0.0	C/25002644-25003327	AT1G66990.1  pseudogenic_transcript  pseudo  gene_syn F1O19.15  note pseudogene, putative receptor serine/threonine kinase, blastp match of 62% identity and 2.0e-43 P-value to GP|21741394|emb|CAD39676.1||AL606993 OSJNBb0051N19.7 {Oryza sativa (japonica cultivar-group)}  
At1g67000	chr1:025006866	0.0	C/25006866-25007604,25005906-25006601,25005781-25005813,25005494-25005520,25004217-25005400	AT1G67000.1  CDS  gene_syn F1O19.18, F1O19_18  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note ATP binding / kinase/ protein kinase/ protein serine/threonine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase family protein (TAIR:AT1G66930.1); Has 82362 Blast hits to 81110 proteins in 3138 species: Archae - 68; Bacteria - 6501; Metazoa - 37257; Fungi - 6308; Plants - 18246; Viruses - 272; Other Eukaryotes - 13710 (source: NCBI BLink).  protein_id AT1G67000.1p  transcript_id AT1G67000.1  protein_id AT1G67000.1p  transcript_id AT1G67000.1  
At1g67010	chr1:025008798	0.0	C/25008798-25009712	AT1G67010.1  pseudogenic_transcript  pseudo  gene_syn F1O19.16  note pseudogene, putative receptor serine/threonine kinase, blastp match of 59% identity and 3.8e-58 P-value to GP|21741394|emb|CAD39676.1||AL606993 OSJNBb0051N19.7 {Oryza sativa (japonica cultivar-group)}  
At1g67020	chr1:025011008	0.0	C/25011008-25012987	AT1G67020.1  CDS  gene_syn F1O19.7, F1O19_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 53 Blast hits to 53 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G67020.1p  transcript_id AT1G67020.1  protein_id AT1G67020.1p  transcript_id AT1G67020.1  
At1g67025	chr1:025014408	0.0	C/25014408-25014435,25013344-25013981	AT1G67025.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT1G18390.1); Has 101 Blast hits to 88 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G67025.1p  transcript_id AT1G67025.1  protein_id AT1G67025.1p  transcript_id AT1G67025.1  
At1g67030	chr1:025016644	0.0	W/25016644-25017237	AT1G67030.1  CDS  gene_syn F1O19.8, F1O19_8, ZFP6, ZINC FINGER PROTEIN 6  gene ZFP6  function Encodes a zinc finger protein containing only a single zinc finger.  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product ZFP6 (ZINC FINGER PROTEIN 6); nucleic acid binding / transcription factor/ zinc ion binding  note ZINC FINGER PROTEIN 6 (ZFP6); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: cytosolic ribosome; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger protein-related (TAIR:AT1G68360.1); Has 431 Blast hits to 429 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 2; Plants - 426; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G67030.1p  transcript_id AT1G67030.1  protein_id AT1G67030.1p  transcript_id AT1G67030.1  
At1g67035	chr1:025018173	0.0	W/25018173-25018677,25018795-25018862	AT1G67035.1  CDS  gene_syn F1O19.9, F1O19_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38300.1); Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G67035.1p  transcript_id AT1G67035.1  protein_id AT1G67035.1p  transcript_id AT1G67035.1  
At1g67040	chr1:025021763	0.0	C/25021763-25021922,25021612-25021673,25019988-25021517,25019779-25019908,25019105-25019703	AT1G67040.1  CDS  gene_syn F1O19.10, F1O19_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26910.2); Has 52 Blast hits to 48 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 2; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G67040.1p  transcript_id AT1G67040.1  protein_id AT1G67040.1p  transcript_id AT1G67040.1  
At1g67050	chr1:025028862	0.0	C/25028862-25029656	AT1G67050.1  CDS  gene_syn F1O19.11, F1O19_11  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38320.2); Has 790 Blast hits to 264 proteins in 63 species: Archae - 0; Bacteria - 14; Metazoa - 319; Fungi - 54; Plants - 74; Viruses - 2; Other Eukaryotes - 327 (source: NCBI BLink).  protein_id AT1G67050.1p  transcript_id AT1G67050.1  protein_id AT1G67050.1p  transcript_id AT1G67050.1  
At1g67060	chr1:025036729	0.0	W/25036729-25036824,25037053-25037148,25038084-25038168,25038272-25038393,25038483-25038507,25038586-25038669,25038759-25038788,25038874-25038976,25039060-25039123	AT1G67060.1  CDS  gene_syn F1O19.19, F1O19_19  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 191 Blast hits to 189 proteins in 96 species: Archae - 0; Bacteria - 114; Metazoa - 0; Fungi - 44; Plants - 13; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT1G67060.1p  transcript_id AT1G67060.1  protein_id AT1G67060.1p  transcript_id AT1G67060.1  
At1g67070	chr1:025042324	0.0	W/25042324-25042683,25043214-25043381,25043487-25043966,25044095-25044412	AT1G67070.1  CDS  gene_syn DARK INDUCIBLE 9, DIN9, F1O19.12, F1O19_12, PHOSPHOMANNOSE ISOMERASE 2, PMI2  gene DIN9  function Encodes a protein with phosphomannose isomerase activity that is involved in synthesis of ascorbic acid. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene s expression pattern is responding to the level of sugar in the cell.  go_component cellular_component|GO:0005575||ND  go_process carbohydrate metabolic process|GO:0005975||ISS  go_process aging|GO:0007568|11240919|IEP  go_process response to light stimulus|GO:0009416|11240919|IEP  go_process response to sucrose stimulus|GO:0009744|11240919|IEP  go_process L-ascorbic acid biosynthetic process|GO:0019853|18755683|IMP  go_function mannose-6-phosphate isomerase activity|GO:0004476|18755683|IDA  go_function mannose-6-phosphate isomerase activity|GO:0004476||ISS  product DIN9 (DARK INDUCIBLE 9); mannose-6-phosphate isomerase  note DARK INDUCIBLE 9 (DIN9); FUNCTIONS IN: mannose-6-phosphate isomerase activity; INVOLVED IN: L-ascorbic acid biosynthetic process, response to light stimulus, aging, carbohydrate metabolic process, response to sucrose stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-6-phosphate isomerase (InterPro:IPR016305), Cupin, RmlC-type (InterPro:IPR011051), Mannose-6-phosphate isomerase, type I (InterPro:IPR001250), RmlC-like jelly roll fold (InterPro:IPR014710), Phosphomannose isomerase, type I, conserved site (InterPro:IPR018050); BEST Arabidopsis thaliana protein match is: MEE31 (MATERNAL EFFECT EMBRYO ARREST 31); mannose-6-phosphate isomerase (TAIR:AT3G02570.1); Has 1284 Blast hits to 1277 proteins in 463 species: Archae - 0; Bacteria - 584; Metazoa - 229; Fungi - 147; Plants - 57; Viruses - 0; Other Eukaryotes - 267 (source: NCBI BLink).  protein_id AT1G67070.1p  transcript_id AT1G67070.1  protein_id AT1G67070.1p  transcript_id AT1G67070.1  
At1g67080	chr1:025046634	0.0	C/25046634-25046681,25046200-25046362,25045993-25046093,25045784-25045912,25045623-25045711,25045405-25045537	AT1G67080.1  CDS  gene_syn ABA4, F1O19.13, F1O19_13, abscisic acid (ABA)-deficient 4  gene ABA4  function Involved in the photoprotection of PSII. aba4-1 mutant completely lacks neoxanthin,a component of the chromophore of the peripheral antenna system in PSII. Expresses neoxanthin synthase activity involved in the neoxanthin biosynthesis, an intermediary in the abscisic acid biosynthesis.  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component PSII associated light-harvesting complex II|GO:0009517|17351115|IGI  go_process abscisic acid biosynthetic process|GO:0009688|17470058|IMP  go_process photoprotection|GO:0010117|17351115|IGI  go_process xanthophyll metabolic process|GO:0016122|17470058|IMP  go_process regulation of superoxide release|GO:0032928|17351115|IMP  go_function intramolecular oxidoreductase activity|GO:0016860|17470058|IMP  product ABA4 (abscisic acid (ABA)-deficient 4); intramolecular oxidoreductase  note abscisic acid (ABA)-deficient 4 (ABA4); FUNCTIONS IN: intramolecular oxidoreductase activity; INVOLVED IN: regulation of superoxide release, abscisic acid biosynthetic process, xanthophyll metabolic process, photoprotection; LOCATED IN: PSII associated light-harvesting complex II, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 662 Blast hits to 662 proteins in 41 species: Archae - 0; Bacteria - 59; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 579 (source: NCBI BLink).  protein_id AT1G67080.1p  transcript_id AT1G67080.1  protein_id AT1G67080.1p  transcript_id AT1G67080.1  
At1g67090	chr1:025049079	0.0	C/25049079-25049249,25048838-25048972,25048465-25048701	AT1G67090.1  CDS  gene_syn F1O19.14, F5A8.1, F5A8_1, RBCS1A, RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A  gene RBCS1A  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function copper ion binding|GO:0005507|16526091|IDA  go_component chloroplast ribulose bisphosphate carboxylase complex|GO:0009573||ISS  go_process response to cold|GO:0009409|14535880|IEP  go_process response to blue light|GO:0009637|18820083|IEP  go_process response to red light|GO:0010114|18820083|IEP  go_process response to far red light|GO:0010218|18820083|IEP  go_process carbon utilization by fixation of carbon dioxide|GO:0015977||ISS  go_function ribulose-bisphosphate carboxylase activity|GO:0016984||ISS  product RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A); copper ion binding / ribulose-bisphosphate carboxylase  note RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A (RBCS1A); FUNCTIONS IN: ribulose-bisphosphate carboxylase activity, copper ion binding; INVOLVED IN: response to blue light, response to cold, carbon utilization by fixation of carbon dioxide, response to red light, response to far red light; LOCATED IN: in 10 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, small chain (InterPro:IPR000894); BEST Arabidopsis thaliana protein match is: ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B) (TAIR:AT5G38430.1); Has 1759 Blast hits to 1738 proteins in 405 species: Archae - 0; Bacteria - 340; Metazoa - 0; Fungi - 0; Plants - 872; Viruses - 0; Other Eukaryotes - 547 (source: NCBI BLink).  protein_id AT1G67090.1p  transcript_id AT1G67090.1  protein_id AT1G67090.1p  transcript_id AT1G67090.1  
At1g67090	chr1:025049079	0.0	C/25049079-25049249,25048845-25048972,25048590-25048701	AT1G67090.2  CDS  gene_syn F1O19.14, F5A8.1, F5A8_1, RBCS1A, RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A  gene RBCS1A  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function copper ion binding|GO:0005507|16526091|IDA  go_component chloroplast ribulose bisphosphate carboxylase complex|GO:0009573||ISS  go_process response to cold|GO:0009409|14535880|IEP  go_process response to blue light|GO:0009637|18820083|IEP  go_process response to red light|GO:0010114|18820083|IEP  go_process response to far red light|GO:0010218|18820083|IEP  go_process carbon utilization by fixation of carbon dioxide|GO:0015977||ISS  go_function ribulose-bisphosphate carboxylase activity|GO:0016984||ISS  product RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A); copper ion binding / ribulose-bisphosphate carboxylase  note RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A (RBCS1A); FUNCTIONS IN: ribulose-bisphosphate carboxylase activity, copper ion binding; INVOLVED IN: response to blue light, response to cold, carbon utilization by fixation of carbon dioxide, response to red light, response to far red light; LOCATED IN: in 7 components; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, small chain (InterPro:IPR000894); BEST Arabidopsis thaliana protein match is: ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B) (TAIR:AT5G38430.1); Has 945 Blast hits to 924 proteins in 176 species: Archae - 0; Bacteria - 63; Metazoa - 0; Fungi - 0; Plants - 827; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT1G67090.2p  transcript_id AT1G67090.2  protein_id AT1G67090.2p  transcript_id AT1G67090.2  
At1g67100	chr1:025053801	0.0	W/25053801-25053990,25054148-25054659	AT1G67100.1  CDS  gene_syn F1O19.17, LBD40, LOB DOMAIN-CONTAINING PROTEIN 40  gene LBD40  go_process response to gibberellin stimulus|GO:0009739|17933900|IEP  product LBD40 (LOB DOMAIN-CONTAINING PROTEIN 40)  note LOB DOMAIN-CONTAINING PROTEIN 40 (LBD40); INVOLVED IN: response to gibberellin stimulus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41) (TAIR:AT3G02550.1); Has 362 Blast hits to 362 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 362; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G67100.1p  transcript_id AT1G67100.1  protein_id AT1G67100.1p  transcript_id AT1G67100.1  
At1g67105	chr1:025057479	0.0	W/25057479-25058264	AT1G67105.1  ncRNA  product other RNA  transcript_id AT1G67105.1  
At1g67110	chr1:025065073	0.0	C/25065073-25065355,25064388-25064847,25063672-25064044,25061836-25062258	AT1G67110.1  CDS  gene_syn CYP735A2, F5A8.3, F5A8_3  gene CYP735A2  function member of CYP709A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP735A2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP735A2; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP735A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT5G38450.1); Has 23675 Blast hits to 23596 proteins in 1240 species: Archae - 42; Bacteria - 2652; Metazoa - 10283; Fungi - 4316; Plants - 5200; Viruses - 6; Other Eukaryotes - 1176 (source: NCBI BLink).  protein_id AT1G67110.1p  transcript_id AT1G67110.1  protein_id AT1G67110.1p  transcript_id AT1G67110.1  
At1g67120	chr1:025095422	0.0	C/25095422-25095526,25094996-25095321,25094787-25094871,25094403-25094674,25094131-25094313,25093853-25094022,25093516-25093625,25093302-25093421,25093068-25093146,25092587-25092709,25092415-25092514,25092260-25092329,25092057-25092176,25091925-25091981,25091667-25091840,25091466-25091588,25089570-25091339,25088898-25089026,25088697-25088801,25088302-25088607,25087956-25088149,25087819-25087873,25087269-25087419,25086474-25086547,25086057-25086198,25085845-25085943,25085662-25085762,25085490-25085579,25085351-25085416,25085057-25085221,25084744-25084951,25083783-25084654,25082147-25083655,25081884-25082061,25081730-25081795,25081335-25081414,25081009-25081257,25080713-25080845,25080551-25080636,25080365-25080450,25079989-25080130,25079813-25079902,25079553-25079676,25079289-25079443,25079084-25079197,25078829-25078978,25078561-25078740,25078297-25078479,25078068-25078169,25077759-25077992,25077558-25077677,25077393-25077474,25077177-25077307,25076925-25077089,25076643-25076718,25076400-25076512,25076242-25076324,25076047-25076160,25075549-25075705,25075252-25075409,25075063-25075157,25074757-25074959,25074426-25074659,25074115-25074336,25073867-25074025,25073574-25073792,25073184-25073462,25072962-25073096,25072554-25072760,25070453-25072462,25070079-25070357,25069842-25069973,25069727-25069759	AT1G67120.1  CDS  gene_syn F5A8.11, F5A8_11  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of protein complex assembly|GO:0043254||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function transcription factor binding|GO:0008134||IEA  go_function ATPase activity|GO:0016887||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  product ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / transcription factor binding  note ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / transcription factor binding; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, transcription factor binding, nucleotide binding, ATP binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of protein complex assembly; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Midasin (InterPro:IPR012099), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase associated with various cellular activities, AAA-5 (InterPro:IPR011704), RNA polymerase sigma factor 54, interaction (InterPro:IPR002078), von Willebrand factor, type A (InterPro:IPR002035); Has 74201 Blast hits to 38856 proteins in 1770 species: Archae - 470; Bacteria - 13915; Metazoa - 23406; Fungi - 7813; Plants - 2626; Viruses - 544; Other Eukaryotes - 25427 (source: NCBI BLink).  protein_id AT1G67120.1p  transcript_id AT1G67120.1  protein_id AT1G67120.1p  transcript_id AT1G67120.1  
At1g67130	chr1:025100250	0.0	C/25100250-25100625,25099907-25100157,25099262-25099810	AT1G67130.1  CDS  gene_syn F5A8.14, F5A8_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G42430.1); Has 620 Blast hits to 598 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 620; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G67130.1p  transcript_id AT1G67130.1  protein_id AT1G67130.1p  transcript_id AT1G67130.1  
At1g67140	chr1:025117208	0.0	C/25117208-25117372,25116621-25116828,25116371-25116477,25115774-25116010,25115584-25115673,25115419-25115506,25114889-25114953,25114477-25114581,25114140-25114229,25113962-25114042,25113782-25113850,25113134-25113259,25112499-25112602,25111923-25112055,25111740-25111846,25111322-25111423,25111013-25111180,25110777-25110863,25110542-25110635,25110351-25110419,25110136-25110258,25109649-25109717,25109439-25109543,25109101-25109189,25108737-25108893,25108227-25108376,25107953-25108002,25107739-25107838,25107593-25107649,25107429-25107496,25107223-25107316,25106810-25106994,25106328-25106472,25106167-25106235,25105955-25106011,25105779-25105865,25105573-25105701,25105294-25105497,25104759-25105193,25104400-25104465,25103936-25104033,25103723-25103819,25103452-25103614,25102784-25103094,25102565-25102699,25102275-25102439,25102048-25102173,25101016-25101852	AT1G67140.1  CDS  gene_syn F5A8.12, F5A8_12, SWEETIE  gene SWEETIE  go_function binding|GO:0005488||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_process carbohydrate metabolic process|GO:0005975|18452589|IMP  go_process starch metabolic process|GO:0005982|18452589|IMP  go_process trehalose metabolic process|GO:0005991|18452589|IMP  product SWEETIE (SWEETIE); binding  note SWEETIE (SWEETIE); FUNCTIONS IN: binding; INVOLVED IN: trehalose metabolic process, carbohydrate metabolic process, starch metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-type fold (InterPro:IPR016024); Has 7920 Blast hits to 5141 proteins in 477 species: Archae - 32; Bacteria - 1176; Metazoa - 3031; Fungi - 970; Plants - 368; Viruses - 117; Other Eukaryotes - 2226 (source: NCBI BLink).  protein_id AT1G67140.1p  transcript_id AT1G67140.1  protein_id AT1G67140.1p  transcript_id AT1G67140.1  
At1g67148	chr1:025121297	0.0	W/25121297-25121327,25121453-25121481,25121596-25121673	AT1G67148.1  CDS  product unknown protein  note unknown protein; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G67148.1p  transcript_id AT1G67148.1  protein_id AT1G67148.1p  transcript_id AT1G67148.1  
At1g67150	chr1:025122588	0.0	W/25122588-25122724,25123429-25124252,25124330-25124607	AT1G67150.2  CDS  gene_syn F5A8.6, F5A8_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65985.1); Has 448 Blast hits to 404 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 448; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G67150.2p  transcript_id AT1G67150.2  protein_id AT1G67150.2p  transcript_id AT1G67150.2  
At1g67150	chr1:025122588	0.0	W/25122588-25122724,25123441-25123784,25123914-25124252,25124330-25124607	AT1G67150.3  CDS  gene_syn F5A8.6, F5A8_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65985.1); Has 459 Blast hits to 393 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 459; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G67150.3p  transcript_id AT1G67150.3  protein_id AT1G67150.3p  transcript_id AT1G67150.3  
At1g67150	chr1:025122588	0.0	W/25122588-25122724,25123441-25124252,25124330-25124607	AT1G67150.1  CDS  gene_syn F5A8.6, F5A8_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65985.1); Has 450 Blast hits to 404 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 450; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G67150.1p  transcript_id AT1G67150.1  protein_id AT1G67150.1p  transcript_id AT1G67150.1  
At1g67160	chr1:025125927	0.0	C/25125927-25127098,25125199-25125247,25124819-25124950	AT1G67160.1  CDS  gene_syn F5A8.7, F5A8_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G03730.1); Has 180 Blast hits to 175 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 180; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G67160.1p  transcript_id AT1G67160.1  protein_id AT1G67160.1p  transcript_id AT1G67160.1  
At1g67170	chr1:025127727	0.0	W/25127727-25128310,25128444-25128589,25128689-25128780,25128888-25129145	AT1G67170.1  CDS  gene_syn F5A8.8, F5A8_8  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 4595 Blast hits to 3549 proteins in 370 species: Archae - 70; Bacteria - 422; Metazoa - 2268; Fungi - 276; Plants - 243; Viruses - 14; Other Eukaryotes - 1302 (source: NCBI BLink).  protein_id AT1G67170.1p  transcript_id AT1G67170.1  protein_id AT1G67170.1p  transcript_id AT1G67170.1  
At1g67180	chr1:025130099	0.0	W/25130099-25130221,25130315-25130448,25130523-25130685,25131060-25131635,25131720-25131908,25131993-25132169	AT1G67180.1  CDS  gene_syn F5A8.9, F5A8_9  go_component intracellular|GO:0005622||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein  note zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: intracellular; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: transcription coactivator (TAIR:AT4G02110.1); Has 1890 Blast hits to 1854 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 958; Fungi - 274; Plants - 255; Viruses - 52; Other Eukaryotes - 351 (source: NCBI BLink).  protein_id AT1G67180.1p  transcript_id AT1G67180.1  protein_id AT1G67180.1p  transcript_id AT1G67180.1  
At1g67190	chr1:025133054	0.0	W/25133054-25134313	AT1G67190.1  CDS  gene_syn F5A8.10, F5A8_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G10780.1); Has 78 Blast hits to 78 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G67190.1p  transcript_id AT1G67190.1  protein_id AT1G67190.1p  transcript_id AT1G67190.1  
At1g67195	chr1:025137378	0.0	C/25137378-25137644	AT1G67195.1  CDS  gene_syn MICRORNA 414, MIR414  gene MIR414  function Potential miRNA (MIR414)  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR414 (MICRORNA 414)  note MICRORNA 414 (MIR414); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 29 Blast hits to 29 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 2; Plants - 16; Viruses - 4; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G67195.1p  transcript_id AT1G67195.1  protein_id AT1G67195.1p  transcript_id AT1G67195.1  
At1g67195	chr1:025137378	0.0	C/25137378-25137644	AT1G67195.2  CDS  gene_syn MICRORNA 414, MIR414  gene MIR414  function Potential miRNA (MIR414)  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR414 (MICRORNA 414)  note MICRORNA 414 (MIR414); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 29 Blast hits to 29 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 2; Plants - 16; Viruses - 4; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G67195.2p  transcript_id AT1G67195.2  protein_id AT1G67195.2p  transcript_id AT1G67195.2  
At1g67200	chr1:025140265	0.0	W/25140265-25140551	AT1G67200.1  pseudogenic_transcript  pseudo  gene_syn F5A8.13  note pseudogene, similar to NL25, similar to disease resistance protein RPS4 GI:5459305 from (Arabidopsis thaliana); blastp match of 40% identity and 3.9e-13 P-value to GP|3947733|emb|CAA08797.1||AJ009719 NL25 {Solanum tuberosum}  
At1g67210	chr1:025141339	0.0	W/25141339-25141369,25141670-25141828,25141984-25142065,25142198-25142273,25142484-25142564,25142656-25142786,25142943-25143195,25143281-25143344,25143434-25143774	AT1G67210.1  CDS  gene_syn F5A8.15  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein  note proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: PSP, proline-rich (InterPro:IPR006568), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (TAIR:AT5G38600.1); Has 158 Blast hits to 158 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 97; Fungi - 6; Plants - 37; Viruses - 4; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G67210.1p  transcript_id AT1G67210.1  protein_id AT1G67210.1p  transcript_id AT1G67210.1  
At1g67210	chr1:025141339	0.0	W/25141339-25141369,25141670-25141828,25141984-25142065,25142198-25142273,25142484-25142564,25142656-25142786,25142943-25143195,25143281-25143344,25143440-25143774	AT1G67210.2  CDS  gene_syn F5A8.15  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein  note proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: PSP, proline-rich (InterPro:IPR006568), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (TAIR:AT5G38600.1); Has 158 Blast hits to 158 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 97; Fungi - 6; Plants - 37; Viruses - 4; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G67210.2p  transcript_id AT1G67210.2  protein_id AT1G67210.2p  transcript_id AT1G67210.2  
At1g67220	chr1:025145587	0.0	W/25145587-25147767,25147860-25148138,25148228-25148356,25148448-25148648,25148749-25148891,25148994-25149294,25149403-25150008,25150097-25150326,25150417-25150450	AT1G67220.1  CDS  gene_syn ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 1, ATHPCAT1, F1N21.4, HAC02, HAC2, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 2  gene HAC2  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription cofactor activity|GO:0003712||ISS  go_function histone acetyltransferase activity|GO:0004402|12466527|ISS  go_function histone acetyltransferase activity|GO:0004402|17877703|TAS  product HAC2 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 2); DNA binding / histone acetyltransferase/ transcription cofactor  note HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 2 (HAC2); FUNCTIONS IN: histone acetyltransferase activity, transcription cofactor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: shoot apical meristem, flower, root, leaf; CONTAINS InterPro DOMAIN/s: Zinc finger, TAZ-type (InterPro:IPR000197), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, ZZ-type (InterPro:IPR000433), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Transcriptional coactivation (InterPro:IPR009255); BEST Arabidopsis thaliana protein match is: HAC12 (histone acetyltransferase of the CBP family 12); H3/H4 histone acetyltransferase/ histone acetyltransferase/ transcription cofactor (TAIR:AT1G16710.1); Has 1403 Blast hits to 1102 proteins in 162 species: Archae - 0; Bacteria - 145; Metazoa - 824; Fungi - 50; Plants - 99; Viruses - 0; Other Eukaryotes - 285 (source: NCBI BLink).  protein_id AT1G67220.1p  transcript_id AT1G67220.1  protein_id AT1G67220.1p  transcript_id AT1G67220.1  
At1g67230	chr1:025155847	0.0	C/25155847-25156032,25155409-25155618,25155036-25155289,25154645-25154915,25154476-25154559,25152119-25154169,25151856-25152003,25151561-25151755	AT1G67230.1  CDS  gene_syn F1N21.5, LINC1, LITTLE NUCLEI1  gene LINC1  function Encodes a nuclear coiled-coil protein related to the carrot peripheral nuclear protein NMCP1 that is involved in the determination of plant nuclear structure.  go_component nucleus|GO:0005634|17873096|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process nucleus organization|GO:0006997|17873096|IGI  go_function molecular_function|GO:0003674||ND  product LINC1 (LITTLE NUCLEI1)  note LITTLE NUCLEI1 (LINC1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: nucleus organization; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: LINC2 (LITTLE NUCLEI2) (TAIR:AT1G13220.2); Has 246432 Blast hits to 104628 proteins in 2568 species: Archae - 2175; Bacteria - 39007; Metazoa - 110567; Fungi - 18339; Plants - 9117; Viruses - 1066; Other Eukaryotes - 66161 (source: NCBI BLink).  protein_id AT1G67230.1p  transcript_id AT1G67230.1  protein_id AT1G67230.1p  transcript_id AT1G67230.1  
At1g67238	chr1:025158115	0.0	C/25158115-25158454	AT1G67238.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G67238.1  
At1g67240	chr1:025158858	0.0	W/25158858-25162322	AT1G67240.1  mRNA_TE_gene  pseudo  gene_syn F1N21.6  note Transposable element gene, Mutator-like transposase family, has a 4.5e-23 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At1g67250	chr1:025164842	0.0	C/25164842-25164967,25164441-25164541,25164048-25164145,25163808-25163908	AT1G67250.1  CDS  gene_syn F1N21.7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product proteasome maturation factor UMP1 family protein  note proteasome maturation factor UMP1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome maturation factor UMP1 (InterPro:IPR008012); BEST Arabidopsis thaliana protein match is: proteasome maturation factor UMP1 family protein (TAIR:AT5G38650.1); Has 170 Blast hits to 170 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 90; Fungi - 2; Plants - 63; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G67250.1p  transcript_id AT1G67250.1  protein_id AT1G67250.1p  transcript_id AT1G67250.1  
At1g67260	chr1:025168228	0.0	C/25168228-25169307	AT1G67260.1  CDS  gene_syn F1N21.8, TCP1  gene TCP1  function Encodes protein with TCP (TB1,CYC,PCF) domain which is likely to be involved in DNA binding and protein-protein interactions. Based on genome analysis, there is a 9-member gene family that possesses this domain in Arabidopsis. Orthologue of Antirrhinum gene CYCLOIDEA.  go_component cellular_component|GO:0005575||ND  go_process flower development|GO:0009908|11470410|TAS  go_function DNA binding|GO:0003677|10363373|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12644657|TAS  product TCP1; DNA binding / transcription factor  note TCP1; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: flower development; LOCATED IN: cellular_component unknown; EXPRESSED IN: floral meristem; EXPRESSED DURING: 2 floral meristem notched, 1 floral meristem visible; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), CYC/TB1, R domain (InterPro:IPR017888), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP12 (TCP DOMAIN PROTEIN 12); transcription factor (TAIR:AT1G68800.1); Has 1323 Blast hits to 1323 proteins in 323 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1317; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G67260.1p  transcript_id AT1G67260.1  protein_id AT1G67260.1p  transcript_id AT1G67260.1  
At1g67260	chr1:025168263	0.0	C/25168263-25169307,25168152-25168162	AT1G67260.2  CDS  gene_syn F1N21.8, TCP1  gene TCP1  function Encodes protein with TCP (TB1,CYC,PCF) domain which is likely to be involved in DNA binding and protein-protein interactions. Based on genome analysis, there is a 9-member gene family that possesses this domain in Arabidopsis. Orthologue of Antirrhinum gene CYCLOIDEA.  go_component cellular_component|GO:0005575||ND  go_process flower development|GO:0009908|11470410|TAS  go_function DNA binding|GO:0003677|10363373|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12644657|TAS  product TCP1; DNA binding / transcription factor  note TCP1; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: flower development; LOCATED IN: cellular_component unknown; EXPRESSED IN: floral meristem; EXPRESSED DURING: 2 floral meristem notched, 1 floral meristem visible; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), CYC/TB1, R domain (InterPro:IPR017888), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP12 (TCP DOMAIN PROTEIN 12); transcription factor (TAIR:AT1G68800.1).  protein_id AT1G67260.2p  transcript_id AT1G67260.2  protein_id AT1G67260.2p  transcript_id AT1G67260.2  
At1g67265	chr1:025175982	0.0	C/25175982-25176104	AT1G67265.1  CDS  gene_syn DEVIL 3, DVL3, ROTUNDIFOLIA LIKE 21, RTFL21  gene RTFL21  go_process shoot development|GO:0048367|14871303|IMP  product RTFL21 (ROTUNDIFOLIA LIKE 21)  note ROTUNDIFOLIA LIKE 21 (RTFL21); INVOLVED IN: shoot development; EXPRESSED IN: stem, flower, root, leaf; CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); BEST Arabidopsis thaliana protein match is: RTFL19 (ROTUNDIFOLIA LIKE 19) (TAIR:AT3G02493.1); Has 69 Blast hits to 69 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G67265.1p  transcript_id AT1G67265.1  protein_id AT1G67265.1p  transcript_id AT1G67265.1  
At1g67270	chr1:025185707	0.0	C/25185707-25185793,25185511-25185608,25185337-25185423,25185094-25185256,25184964-25185033,25184684-25184880,25184454-25184596,25184185-25184376,25184012-25184102,25183765-25183933,25183564-25183674,25183382-25183481,25183177-25183294	AT1G67270.1  CDS  gene_syn F1N21.9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DDT superfamily (InterPro:IPR018501), DDT subgroup (InterPro:IPR018500), Cell division cycle-associated protein (InterPro:IPR018866); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67780.1); Has 297 Blast hits to 296 proteins in 63 species: Archae - 0; Bacteria - 2; Metazoa - 128; Fungi - 30; Plants - 98; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT1G67270.1p  transcript_id AT1G67270.1  protein_id AT1G67270.1p  transcript_id AT1G67270.1  
At1g67280	chr1:025190088	0.0	C/25190088-25190134,25189873-25189997,25189668-25189732,25189333-25189545,25189151-25189198,25188928-25189035,25188692-25188832,25188563-25188604	AT1G67280.2  CDS  gene_syn F1N21.10  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_function lactoylglutathione lyase activity|GO:0004462||IEA  go_function metal ion binding|GO:0046872||IEA  go_component stromule|GO:0010319|16923014|IDA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_process response to cold|GO:0009409|16923014|IEP  go_function lactoylglutathione lyase activity|GO:0004462||ISS  product lactoylglutathione lyase, putative / glyoxalase I, putative  note lactoylglutathione lyase, putative / glyoxalase I, putative; FUNCTIONS IN: lactoylglutathione lyase activity, metal ion binding; INVOLVED IN: response to cold, carbohydrate metabolic process; LOCATED IN: thylakoid, stromule, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361), Glyoxalase I, conserved site (InterPro:IPR018146), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: ATGLX1 (GLYOXALASE I HOMOLOG); lactoylglutathione lyase/ metal ion binding (TAIR:AT1G11840.4); Has 6006 Blast hits to 3422 proteins in 941 species: Archae - 58; Bacteria - 3242; Metazoa - 415; Fungi - 252; Plants - 159; Viruses - 0; Other Eukaryotes - 1880 (source: NCBI BLink).  protein_id AT1G67280.2p  transcript_id AT1G67280.2  protein_id AT1G67280.2p  transcript_id AT1G67280.2  
At1g67280	chr1:025190433	0.0	C/25190433-25190547,25190088-25190283,25189873-25189997,25189668-25189732,25189333-25189545,25189151-25189198,25188928-25189035,25188692-25188832,25188563-25188604	AT1G67280.1  CDS  gene_syn F1N21.10  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_function lactoylglutathione lyase activity|GO:0004462||IEA  go_function metal ion binding|GO:0046872||IEA  go_component stromule|GO:0010319|16923014|IDA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_process response to cold|GO:0009409|16923014|IEP  go_function lactoylglutathione lyase activity|GO:0004462||ISS  product lactoylglutathione lyase, putative / glyoxalase I, putative  note lactoylglutathione lyase, putative / glyoxalase I, putative; FUNCTIONS IN: lactoylglutathione lyase activity, metal ion binding; INVOLVED IN: response to cold, carbohydrate metabolic process; LOCATED IN: thylakoid, thylakoid lumen, stromule, chloroplast, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361), Glyoxalase I, conserved site (InterPro:IPR018146), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: ATGLX1 (GLYOXALASE I HOMOLOG); lactoylglutathione lyase/ metal ion binding (TAIR:AT1G11840.4); Has 6020 Blast hits to 3452 proteins in 942 species: Archae - 58; Bacteria - 3261; Metazoa - 415; Fungi - 242; Plants - 152; Viruses - 0; Other Eukaryotes - 1892 (source: NCBI BLink).  protein_id AT1G67280.1p  transcript_id AT1G67280.1  protein_id AT1G67280.1p  transcript_id AT1G67280.1  
At1g67290	chr1:025192645	0.0	C/25192645-25193160,25191168-25192499	AT1G67290.1  CDS  gene_syn F1N21.11  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glyoxal oxidase-related  note glyoxal oxidase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Galactose oxidase, beta-propeller (InterPro:IPR015916), Immunoglobulin E-set (InterPro:IPR014756), Glyoxal oxidase, N-terminal (InterPro:IPR009880), Region of unknown function DUF1929 (InterPro:IPR015202); BEST Arabidopsis thaliana protein match is: glyoxal oxidase-related (TAIR:AT5G19580.1); Has 571 Blast hits to 569 proteins in 113 species: Archae - 0; Bacteria - 228; Metazoa - 1; Fungi - 171; Plants - 154; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G67290.1p  transcript_id AT1G67290.1  protein_id AT1G67290.1p  transcript_id AT1G67290.1  
At1g67300	chr1:025196661	0.0	C/25196661-25196751,25196465-25196582,25196318-25196385,25196092-25196224,25195607-25195706,25195405-25195517,25195191-25195284,25194893-25195052,25194635-25194778,25194467-25194547,25194292-25194376,25194099-25194213,25193832-25194014	AT1G67300.2  CDS  gene_syn F1N21.12  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product hexose transporter, putative  note hexose transporter, putative; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: SGB1 (SUPPRESSOR OF G PROTEIN BETA1); carbohydrate transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT1G79820.2); Has 25681 Blast hits to 25295 proteins in 1402 species: Archae - 357; Bacteria - 13235; Metazoa - 4312; Fungi - 4716; Plants - 1519; Viruses - 2; Other Eukaryotes - 1540 (source: NCBI BLink).  protein_id AT1G67300.2p  transcript_id AT1G67300.2  protein_id AT1G67300.2p  transcript_id AT1G67300.2  
At1g67300	chr1:025196661	0.0	C/25196661-25196751,25196465-25196582,25196318-25196385,25196092-25196224,25195607-25195706,25195405-25195517,25195191-25195284,25194893-25195052,25194635-25194778,25194474-25194547,25194292-25194380,25194099-25194213,25193832-25194014	AT1G67300.1  CDS  gene_syn F1N21.12  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product hexose transporter, putative  note hexose transporter, putative; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Sugar/inositol transporter (InterPro:IPR003663), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: SGB1 (SUPPRESSOR OF G PROTEIN BETA1); carbohydrate transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT1G79820.2); Has 25763 Blast hits to 25368 proteins in 1412 species: Archae - 362; Bacteria - 13278; Metazoa - 4299; Fungi - 4734; Plants - 1526; Viruses - 2; Other Eukaryotes - 1562 (source: NCBI BLink).  protein_id AT1G67300.1p  transcript_id AT1G67300.1  protein_id AT1G67300.1p  transcript_id AT1G67300.1  
At1g67310	chr1:025203024	0.0	C/25203024-25203126,25202604-25202729,25202392-25202507,25202190-25202278,25202042-25202096,25201450-25201951,25201051-25201139,25200741-25200825,25200425-25200648,25199573-25200261,25198780-25199359,25198394-25198687,25198182-25198280	AT1G67310.1  CDS  gene_syn F1N21.13  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function transcription regulator activity|GO:0030528|12218065|TAS  product calmodulin binding / transcription regulator  note calmodulin binding / transcription regulator; FUNCTIONS IN: transcription regulator activity, calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), CG-1 (InterPro:IPR005559), IQ calmodulin-binding region (InterPro:IPR000048), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: SR1 (SIGNAL RESPONSIVE 1); calmodulin binding / transcription regulator (TAIR:AT2G22300.2); Has 3559 Blast hits to 2464 proteins in 200 species: Archae - 0; Bacteria - 110; Metazoa - 1584; Fungi - 149; Plants - 222; Viruses - 4; Other Eukaryotes - 1490 (source: NCBI BLink).  protein_id AT1G67310.1p  transcript_id AT1G67310.1  protein_id AT1G67310.1p  transcript_id AT1G67310.1  
At1g67320	chr1:025208828	0.0	C/25208828-25208966,25208677-25208738,25208494-25208597,25208318-25208399,25208182-25208241,25208047-25208104,25207810-25207829,25207637-25207720,25207473-25207537,25207342-25207390,25207216-25207263,25207050-25207139,25206899-25206958,25206644-25206688,25206434-25206508,25206232-25206317,25205738-25205831,25205520-25205648	AT1G67320.1  CDS  gene_syn F1N21.14  go_component alpha DNA polymerase:primase complex|GO:0005658||IEA  go_process DNA replication, synthesis of RNA primer|GO:0006269||IEA  go_function DNA primase activity|GO:0003896||IEA  go_function DNA primase activity|GO:0003896||ISS  product DNA primase, large subunit family  note DNA primase, large subunit family; FUNCTIONS IN: DNA primase activity; INVOLVED IN: DNA replication, synthesis of RNA primer; LOCATED IN: alpha DNA polymerase:primase complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA primase, large subunit, eukaryotic (InterPro:IPR016558), DNA primase, large subunit, eukaryotic/archaeal (InterPro:IPR007238); Has 329 Blast hits to 325 proteins in 153 species: Archae - 6; Bacteria - 0; Metazoa - 133; Fungi - 93; Plants - 26; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT1G67320.1p  transcript_id AT1G67320.1  protein_id AT1G67320.1p  transcript_id AT1G67320.1  
At1g67325	chr1:025212404	0.0	C/25212404-25212412,25212129-25212174,25211764-25211879,25211088-25211361,25210884-25210963,25210727-25210772,25210504-25210613,25210283-25210307,25210047-25210201,25209825-25209827	AT1G67325.1  CDS  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function binding|GO:0005488||ISS  product binding / zinc ion binding  note binding / zinc ion binding; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: TAF15 (TBP-associated factor 15); RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding (TAIR:AT1G50300.1); Has 1400 Blast hits to 940 proteins in 111 species: Archae - 0; Bacteria - 4; Metazoa - 839; Fungi - 67; Plants - 293; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink).  protein_id AT1G67325.1p  transcript_id AT1G67325.1  protein_id AT1G67325.1p  transcript_id AT1G67325.1  
At1g67328	chr1:025213843	0.0	C/25213843-25215050	AT1G67328.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G67330  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G67328.1  
At1g67330	chr1:025214118	0.0	W/25214118-25214993	AT1G67330.1  CDS  gene_syn F1N21.15  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579, plant (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27930.1); Has 161 Blast hits to 161 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 152; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G67330.1p  transcript_id AT1G67330.1  protein_id AT1G67330.1p  transcript_id AT1G67330.1  
At1g67340	chr1:025230323	0.0	W/25230323-25230546,25230632-25230794,25230870-25231622	AT1G67340.1  CDS  gene_syn F1N21.16  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_process biological_process|GO:0008150||ND  product zinc finger (MYND type) family protein / F-box family protein  note zinc finger (MYND type) family protein / F-box family protein; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Zinc finger, MYND-type (InterPro:IPR002893), Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: zinc finger (MYND type) family protein (TAIR:AT5G50450.1); Has 411 Blast hits to 401 proteins in 106 species: Archae - 0; Bacteria - 98; Metazoa - 86; Fungi - 80; Plants - 80; Viruses - 2; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT1G67340.1p  transcript_id AT1G67340.1  protein_id AT1G67340.1p  transcript_id AT1G67340.1  
At1g67350	chr1:025235917	0.0	W/25235917-25236132,25236604-25236783	AT1G67350.1  CDS  gene_syn F1N21.17  go_component mitochondrial membrane|GO:0031966|16407270|IDA  go_component respiratory chain complex I|GO:0045271|16407270|IDA  go_process photorespiration|GO:0009853|16407270|TAS  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrial membrane, respiratory chain complex I; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G67350.1p  transcript_id AT1G67350.1  protein_id AT1G67350.1p  transcript_id AT1G67350.1  
At1g67350	chr1:025235917	0.0	W/25235917-25236132,25236604-25236783	AT1G67350.2  CDS  gene_syn F1N21.17  go_component mitochondrial membrane|GO:0031966|16407270|IDA  go_component respiratory chain complex I|GO:0045271|16407270|IDA  go_process photorespiration|GO:0009853|16407270|TAS  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrial membrane, respiratory chain complex I; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G67350.2p  transcript_id AT1G67350.2  protein_id AT1G67350.2p  transcript_id AT1G67350.2  
At1g67360	chr1:025237674	0.0	C/25237674-25237913,25237072-25237554	AT1G67360.1  CDS  gene_syn F1N21.18  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  product rubber elongation factor (REF) family protein  note rubber elongation factor (REF) family protein; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rubber elongation factor (InterPro:IPR008802); BEST Arabidopsis thaliana protein match is: rubber elongation factor (REF) protein-related (TAIR:AT2G47780.1); Has 76 Blast hits to 76 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G67360.1p  transcript_id AT1G67360.1  protein_id AT1G67360.1p  transcript_id AT1G67360.1  
At1g67360	chr1:025237674	0.0	C/25237674-25237913,25237072-25237554	AT1G67360.2  CDS  gene_syn F1N21.18  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  product rubber elongation factor (REF) family protein  note rubber elongation factor (REF) family protein; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rubber elongation factor (InterPro:IPR008802); BEST Arabidopsis thaliana protein match is: rubber elongation factor (REF) protein-related (TAIR:AT2G47780.1); Has 76 Blast hits to 76 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G67360.2p  transcript_id AT1G67360.2  protein_id AT1G67360.2p  transcript_id AT1G67360.2  
At1g67365	chr1:025238410	0.0	W/25238410-25239235	AT1G67365.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G67370  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G67365.1  
At1g67370	chr1:025243711	0.0	C/25243711-25243713,25243523-25243579,25243181-25243277,25242996-25243064,25242810-25242902,25242483-25242603,25242313-25242382,25242176-25242217,25241711-25241839,25241515-25241628,25241364-25241406,25241244-25241279,25241022-25241149,25240901-25240913,25240677-25240753,25240481-25240576,25240222-25240372,25240057-25240133,25239932-25239992,25239708-25239856,25239502-25239612,25239347-25239400	AT1G67370.1  CDS  gene_syn ASY1, ASYNAPTIC 1, ATASY1, F1N21.19  gene ASY1  function meiotic asynaptic mutant 1 (ASY1). ASY1 protein is initially distributed as numerous foci throughout the chromatin. During early G2, the foci are juxtaposed to the nascent chromosome axes to form a continuous axis associated signal.  go_component condensed nuclear chromosome|GO:0000794|12186950|IDA  go_component condensed nuclear chromosome|GO:0000794|15854901|IDA  go_process synapsis|GO:0007129|11321367|IMP  go_process synapsis|GO:0007129|12186950|IDA  go_process synaptonemal complex assembly|GO:0007130|10855496|ISS  go_process chiasma formation|GO:0051026|9451956|IMP  go_function DNA binding|GO:0003677||ISS  product ASY1 (ASYNAPTIC 1); DNA binding  note ASYNAPTIC 1 (ASY1); FUNCTIONS IN: DNA binding; INVOLVED IN: synaptonemal complex assembly, synapsis, chiasma formation; LOCATED IN: condensed nuclear chromosome; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: SWIRM (InterPro:IPR007526), DNA-binding HORMA (InterPro:IPR003511); BEST Arabidopsis thaliana protein match is: ASY2; DNA binding (TAIR:AT4G32200.1); Has 446 Blast hits to 406 proteins in 115 species: Archae - 0; Bacteria - 14; Metazoa - 139; Fungi - 84; Plants - 34; Viruses - 23; Other Eukaryotes - 152 (source: NCBI BLink).  protein_id AT1G67370.1p  transcript_id AT1G67370.1  protein_id AT1G67370.1p  transcript_id AT1G67370.1  
At1g67390	chr1:025244690	0.0	W/25244690-25245019,25245769-25246386,25246469-25246642,25246822-25247139	AT1G67390.1  CDS  gene_syn F1N21.21  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box protein-related (TAIR:AT3G60790.1); Has 1242 Blast hits to 1224 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1242; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G67390.1p  transcript_id AT1G67390.1  protein_id AT1G67390.1p  transcript_id AT1G67390.1  
At1g67400	chr1:025250559	0.0	C/25250559-25250664,25249173-25249309,25248897-25249081,25248764-25248818,25248565-25248685,25248449-25248496,25248273-25248367,25248099-25248197	AT1G67400.1  CDS  gene_syn F1N21.22  go_component cytoskeleton|GO:0005856||IEA  go_process phagocytosis|GO:0006909||IEA  product unknown protein  note INVOLVED IN: phagocytosis; LOCATED IN: cytoskeleton; CONTAINS InterPro DOMAIN/s: Engulfment and cell motility, ELMO (InterPro:IPR006816); BEST Arabidopsis thaliana protein match is: phagocytosis and cell motility protein ELMO1-related (TAIR:AT3G43400.1); Has 660 Blast hits to 660 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 430; Fungi - 39; Plants - 109; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT1G67400.1p  transcript_id AT1G67400.1  protein_id AT1G67400.1p  transcript_id AT1G67400.1  
At1g67410	chr1:025253095	0.0	C/25253095-25253568,25252408-25252809,25251606-25252022	AT1G67410.1  CDS  gene_syn F1N21.23  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product exostosin family protein  note exostosin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: exostosin family protein (TAIR:AT1G74680.1); Has 713 Blast hits to 709 proteins in 67 species: Archae - 0; Bacteria - 6; Metazoa - 100; Fungi - 4; Plants - 532; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT1G67410.1p  transcript_id AT1G67410.1  protein_id AT1G67410.1p  transcript_id AT1G67410.1  
At1g67420	chr1:025255411	0.0	W/25255411-25255626,25255705-25255790,25255909-25256010,25256221-25256327,25256403-25256503,25256671-25256758,25257118-25257206,25257367-25257506,25257603-25257768,25257851-25257986,25258097-25258190,25258277-25258403,25258488-25258547,25258636-25258754,25258885-25259009,25259164-25259388,25259483-25259643,25259736-25259899,25259963-25260045,25260129-25260358	AT1G67420.1  CDS  gene_syn T1F15.12, T1F15_12  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function peptidase activity|GO:0008233||IEA  product peptidase  note peptidase; FUNCTIONS IN: peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M28 (InterPro:IPR007484); BEST Arabidopsis thaliana protein match is: 24 kDa vacuolar protein, putative (TAIR:AT5G20660.1); Has 1251 Blast hits to 1241 proteins in 286 species: Archae - 12; Bacteria - 416; Metazoa - 476; Fungi - 178; Plants - 37; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).  protein_id AT1G67420.1p  transcript_id AT1G67420.1  protein_id AT1G67420.1p  transcript_id AT1G67420.1  
At1g67430	chr1:025262209	0.0	W/25262209-25262211,25262321-25262357,25262442-25262482,25262915-25263145,25263238-25263340,25263425-25263492,25263583-25263627	AT1G67430.1  CDS  gene_syn T1F15.11, T1F15_11  go_component nucleolus|GO:0005730|15496452|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L17 (RPL17B)  note 60S ribosomal protein L17 (RPL17B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L22/L17 (InterPro:IPR001063), Ribosomal protein L22/L17, eukaryotic/archaeal (InterPro:IPR005721), Ribosomal protein L22/L17, conserved site (InterPro:IPR018260); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L17 (RPL17A) (TAIR:AT1G27400.1); Has 1644 Blast hits to 1644 proteins in 483 species: Archae - 235; Bacteria - 361; Metazoa - 438; Fungi - 108; Plants - 104; Viruses - 0; Other Eukaryotes - 398 (source: NCBI BLink).  protein_id AT1G67430.1p  transcript_id AT1G67430.1  protein_id AT1G67430.1p  transcript_id AT1G67430.1  
At1g67440	chr1:025265045	0.0	C/25265045-25265551,25264748-25264966,25264470-25264664,25264199-25264383,25263905-25264100	AT1G67440.1  CDS  gene_syn T1F15.10, T1F15_10, emb1688, embryo defective 1688  gene emb1688  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product emb1688 (embryo defective 1688); GTP binding / GTPase  note embryo defective 1688 (emb1688); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: embryonic development ending in seed dormancy; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), EngC GTPase (InterPro:IPR010914), GTPase EngC (InterPro:IPR004881); BEST Arabidopsis thaliana protein match is: GTP binding / GTPase (TAIR:AT1G67460.1); Has 3062 Blast hits to 3062 proteins in 1096 species: Archae - 16; Bacteria - 2289; Metazoa - 2; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink).  protein_id AT1G67440.1p  transcript_id AT1G67440.1  protein_id AT1G67440.1p  transcript_id AT1G67440.1  
At1g67450	chr1:025266163	0.0	W/25266163-25267359	AT1G67450.1  CDS  gene_syn T1F15.9, T1F15_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G13680.1); Has 683 Blast hits to 659 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 683; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G67450.1p  transcript_id AT1G67450.1  protein_id AT1G67450.1p  transcript_id AT1G67450.1  
At1g67455	chr1:025268145	0.0	W/25268145-25268309,25268457-25268594,25268867-25268947,25269027-25269213,25269396-25269475	AT1G67455.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G60560.1); Has 222 Blast hits to 197 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 222; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G67455.1p  transcript_id AT1G67455.1  protein_id AT1G67455.1p  transcript_id AT1G67455.1  
At1g67460	chr1:025270982	0.0	C/25270982-25271617,25270433-25270613,25270114-25270283,25269843-25270027,25269626-25269758	AT1G67460.1  CDS  gene_syn T1F15.7, T1F15_7  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_process biological_process|GO:0008150||ND  product GTP binding / GTPase  note GTP binding / GTPase; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: petal, hypocotyl, flower, leaf; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: EngC GTPase (InterPro:IPR010914), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), GTPase EngC (InterPro:IPR004881); BEST Arabidopsis thaliana protein match is: emb1688 (embryo defective 1688); GTP binding / GTPase (TAIR:AT1G67440.1); Has 3234 Blast hits to 3233 proteins in 1115 species: Archae - 34; Bacteria - 2419; Metazoa - 2; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 756 (source: NCBI BLink).  protein_id AT1G67460.1p  transcript_id AT1G67460.1  protein_id AT1G67460.1p  transcript_id AT1G67460.1  
At1g67470	chr1:025272247	0.0	W/25272247-25273416	AT1G67470.1  CDS  gene_syn T1F15.6  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G65250.1); Has 21178 Blast hits to 20996 proteins in 883 species: Archae - 2; Bacteria - 1636; Metazoa - 5632; Fungi - 603; Plants - 11445; Viruses - 32; Other Eukaryotes - 1828 (source: NCBI BLink).  protein_id AT1G67470.1p  transcript_id AT1G67470.1  protein_id AT1G67470.1p  transcript_id AT1G67470.1  
At1g67480	chr1:025277294	0.0	W/25277294-25278115,25278221-25278529	AT1G67480.1  CDS  gene_syn T1F15.5, T1F15_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT1G27420.1); Has 9349 Blast hits to 4754 proteins in 382 species: Archae - 21; Bacteria - 551; Metazoa - 7219; Fungi - 97; Plants - 791; Viruses - 153; Other Eukaryotes - 517 (source: NCBI BLink).  protein_id AT1G67480.1p  transcript_id AT1G67480.1  protein_id AT1G67480.1p  transcript_id AT1G67480.1  
At1g67480	chr1:025277294	0.0	W/25277294-25278115,25278221-25278529	AT1G67480.2  CDS  gene_syn T1F15.5, T1F15_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT1G27420.1); Has 9349 Blast hits to 4754 proteins in 382 species: Archae - 21; Bacteria - 551; Metazoa - 7219; Fungi - 97; Plants - 791; Viruses - 153; Other Eukaryotes - 517 (source: NCBI BLink).  protein_id AT1G67480.2p  transcript_id AT1G67480.2  protein_id AT1G67480.2p  transcript_id AT1G67480.2  
At1g67481	chr1:025278944	0.0	C/25278944-25279207	AT1G67481.1  miRNA  gene_syn MICRORNA839A, MIR839A  gene MIR839A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UACCAACCUUUCAUCGUUCCC  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR839A (MICRORNA839A); miRNA  transcript_id AT1G67481.1  
At1g67490	chr1:025286282	0.0	C/25286282-25286581,25286121-25286194,25285477-25285645,25285229-25285315,25285059-25285127,25284844-25284940,25284349-25284431,25283878-25283985,25283637-25283758,25283380-25283487,25283230-25283303,25282753-25282878,25282435-25282502,25281979-25282128,25281838-25281891,25281677-25281733,25281408-25281557,25281211-25281302,25281025-25281134,25280852-25280915,25280633-25280777	AT1G67490.2  CDS  gene_syn GCS1, GLUCOSIDASE 1, KNF, KNOPF, T1F15.4, T1F15_4  gene GCS1  function Encodes an alpha-glucosidase I enzyme that catalyzes the first step in N-linked glycan processing. Localized to the endoplasmic reticulum (ER).  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum|GO:0005783|17138701|IDA  go_process epidermal cell differentiation|GO:0009913|18503769|IMP  go_process root epidermal cell differentiation|GO:0010053|18503769|IMP  go_function alpha-glucosidase activity|GO:0004558|11901167|IDA  go_function alpha-glucosidase activity|GO:0004558|11901167|TAS  product GCS1 (GLUCOSIDASE 1); alpha-glucosidase  note GLUCOSIDASE 1 (GCS1); FUNCTIONS IN: alpha-glucosidase activity; INVOLVED IN: root epidermal cell differentiation, epidermal cell differentiation; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 63 (InterPro:IPR004888), Six-hairpin glycosidase-like (InterPro:IPR008928); BEST Arabidopsis thaliana protein match is: alpha-glucosidase, putative (TAIR:AT1G24320.1); Has 324 Blast hits to 285 proteins in 124 species: Archae - 2; Bacteria - 40; Metazoa - 117; Fungi - 78; Plants - 37; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT1G67490.2p  transcript_id AT1G67490.2  protein_id AT1G67490.2p  transcript_id AT1G67490.2  
At1g67490	chr1:025286282	0.0	C/25286282-25286581,25286121-25286194,25285789-25286040,25285477-25285645,25285229-25285315,25285059-25285127,25284844-25284940,25284349-25284431,25283878-25283985,25283637-25283758,25283380-25283487,25283230-25283303,25282753-25282878,25282435-25282502,25281979-25282128,25281838-25281891,25281677-25281733,25281408-25281557,25281211-25281302,25281025-25281134,25280852-25280915,25280633-25280777	AT1G67490.1  CDS  gene_syn GCS1, GLUCOSIDASE 1, KNF, KNOPF, T1F15.4, T1F15_4  gene GCS1  function Encodes an alpha-glucosidase I enzyme that catalyzes the first step in N-linked glycan processing. Localized to the endoplasmic reticulum (ER).  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum|GO:0005783|17138701|IDA  go_process epidermal cell differentiation|GO:0009913|18503769|IMP  go_process root epidermal cell differentiation|GO:0010053|18503769|IMP  go_function alpha-glucosidase activity|GO:0004558|11901167|IDA  go_function alpha-glucosidase activity|GO:0004558|11901167|TAS  product GCS1 (GLUCOSIDASE 1); alpha-glucosidase  note GLUCOSIDASE 1 (GCS1); FUNCTIONS IN: alpha-glucosidase activity; INVOLVED IN: root epidermal cell differentiation, epidermal cell differentiation; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 63 (InterPro:IPR004888), Six-hairpin glycosidase-like (InterPro:IPR008928); BEST Arabidopsis thaliana protein match is: alpha-glucosidase, putative (TAIR:AT1G24320.1); Has 295 Blast hits to 291 proteins in 124 species: Archae - 2; Bacteria - 40; Metazoa - 94; Fungi - 86; Plants - 23; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT1G67490.1p  transcript_id AT1G67490.1  protein_id AT1G67490.1p  transcript_id AT1G67490.1  
At1g67500	chr1:025296603	0.0	C/25296603-25296714,25296360-25296442,25296215-25296272,25296070-25296119,25295788-25295900,25295667-25295712,25295489-25295557,25294929-25295072,25294658-25294841,25294488-25294579,25292789-25294409,25292396-25292587,25291845-25292197,25291397-25291539,25290730-25291312,25290507-25290653,25290053-25290325,25289780-25289887,25289491-25289696,25288978-25289281,25288275-25288892,25287707-25287880	AT1G67500.1  CDS  gene_syn ARABIDOPSIS THALIANA RECOVERY PROTEIN 3, ATREV3, T1F15.3, T1F15_3  gene ATREV3  function Encodes the catalytic subunit of DNA polymerase zeta.Mutants are sensitive to UV-B radiation. Gene is involved in damage-tolerance mechanisms through translesion synthesis(TLS).  go_component zeta DNA polymerase complex|GO:0016035|12953110|ISS  go_process DNA repair|GO:0006281|12953110|IDA  go_process response to UV|GO:0009411|12953110|IMP  go_process response to UV-B|GO:0010224|12953110|IMP  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed DNA polymerase activity|GO:0003887|12953110|ISS  product ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3); DNA binding / DNA-directed DNA polymerase  note ARABIDOPSIS THALIANA RECOVERY PROTEIN 3 (ATREV3); FUNCTIONS IN: DNA-directed DNA polymerase activity, DNA binding; INVOLVED IN: response to UV, DNA repair, response to UV-B; LOCATED IN: zeta DNA polymerase complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed DNA polymerase, family B, conserved region2 (InterPro:IPR017966), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), DNA-directed DNA polymerase, family B, conserved site (InterPro:IPR017964), DNA-directed DNA polymerase, family B (InterPro:IPR006172), DNA-directed DNA polymerase, family B, conserved region (InterPro:IPR006134); BEST Arabidopsis thaliana protein match is: EMB2780 (EMBRYO DEFECTIVE 2780); DNA binding / DNA-directed DNA polymerase/ nucleic acid binding / nucleotide binding (TAIR:AT5G63960.1); Has 4923 Blast hits to 4403 proteins in 1017 species: Archae - 266; Bacteria - 553; Metazoa - 545; Fungi - 424; Plants - 105; Viruses - 1653; Other Eukaryotes - 1377 (source: NCBI BLink).  protein_id AT1G67500.1p  transcript_id AT1G67500.1  protein_id AT1G67500.1p  transcript_id AT1G67500.1  
At1g67510	chr1:025298696	0.0	C/25298696-25300184,25297477-25298147	AT1G67510.1  CDS  gene_syn T1F15.2, T1F15_2  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT2G01210.1); Has 96726 Blast hits to 71715 proteins in 2384 species: Archae - 68; Bacteria - 8296; Metazoa - 31560; Fungi - 5101; Plants - 39529; Viruses - 187; Other Eukaryotes - 11985 (source: NCBI BLink).  protein_id AT1G67510.1p  transcript_id AT1G67510.1  protein_id AT1G67510.1p  transcript_id AT1G67510.1  
At1g67520	chr1:025304723	0.0	C/25304723-25305857,25304037-25304212,25303755-25303965,25303439-25303680	AT1G67520.1  CDS  gene_syn T1F15.1, T1F15_1  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product lectin protein kinase family protein  note lectin protein kinase family protein; FUNCTIONS IN: in 7 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609), PAN-like, type 2 (InterPro:IPR013227), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CES101 (CALLUS EXPRESSION OF RBCS 101); ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding (TAIR:AT3G16030.1); Has 69010 Blast hits to 67955 proteins in 2779 species: Archae - 25; Bacteria - 5013; Metazoa - 30389; Fungi - 4725; Plants - 17778; Viruses - 214; Other Eukaryotes - 10866 (source: NCBI BLink).  protein_id AT1G67520.1p  transcript_id AT1G67520.1  protein_id AT1G67520.1p  transcript_id AT1G67520.1  
At1g67530	chr1:025308229	0.0	W/25308229-25308279,25308504-25308689,25308780-25308887,25309005-25310167,25310241-25311081	AT1G67530.1  CDS  gene_syn F12B7.8, F12B7_8  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  product armadillo/beta-catenin repeat family protein / U-box domain-containing family protein  note armadillo/beta-catenin repeat family protein / U-box domain-containing family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein / U-box domain-containing family protein (TAIR:AT1G24330.1); Has 2149 Blast hits to 2008 proteins in 180 species: Archae - 0; Bacteria - 14; Metazoa - 669; Fungi - 156; Plants - 1140; Viruses - 3; Other Eukaryotes - 167 (source: NCBI BLink).  protein_id AT1G67530.1p  transcript_id AT1G67530.1  protein_id AT1G67530.1p  transcript_id AT1G67530.1  
At1g67530	chr1:025308229	0.0	W/25308229-25308279,25308504-25308689,25308780-25308887,25309005-25310167,25310241-25311081	AT1G67530.2  CDS  gene_syn F12B7.8, F12B7_8  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  product armadillo/beta-catenin repeat family protein / U-box domain-containing family protein  note armadillo/beta-catenin repeat family protein / U-box domain-containing family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein / U-box domain-containing family protein (TAIR:AT1G24330.1).  protein_id AT1G67530.2p  transcript_id AT1G67530.2  protein_id AT1G67530.2p  transcript_id AT1G67530.2  
At1g67540	chr1:025311496	0.0	C/25311496-25312194	AT1G67540.1  CDS  gene_syn F12B7.9, F12B7_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; Has 11 Blast hits to 11 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G67540.1p  transcript_id AT1G67540.1  protein_id AT1G67540.1p  transcript_id AT1G67540.1  
At1g67540	chr1:025312349	0.0	C/25312349-25312351,25311496-25312260	AT1G67540.2  CDS  gene_syn F12B7.9, F12B7_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; Has 11 Blast hits to 11 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G67540.2p  transcript_id AT1G67540.2  protein_id AT1G67540.2p  transcript_id AT1G67540.2  
At1g67550	chr1:025312842	0.0	W/25312842-25312967,25313060-25313133,25313228-25313273,25313353-25313458,25313574-25313719,25313852-25313962,25314047-25314210,25314276-25314654,25314733-25314841,25314907-25315046,25315141-25315278,25315364-25315455,25315566-25315695,25315774-25315932,25316011-25316178,25316294-25316428,25316517-25316588,25316690-25316911	AT1G67550.1  CDS  gene_syn F12B7.10, F12B7_10, URE, UREASE  gene URE  function Encodes a nickel-containing urea hydrolase involved in nitrogen recycling. It requires three urease accessory proteins for its activation.  go_component cellular_component|GO:0005575||ND  go_process nitrogen compound metabolic process|GO:0006807|16244137|IDA  go_function urease activity|GO:0009039|16244137|IDA  go_function urease activity|GO:0009039||ISS  product URE (UREASE); urease  note UREASE (URE); FUNCTIONS IN: urease activity; INVOLVED IN: nitrogen compound metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Urease, alpha subunit (InterPro:IPR005848), Urease, alpha subunit, conserved site (InterPro:IPR017950), Amidohydrolase 1 (InterPro:IPR006680), Urease, gamma subunit region (InterPro:IPR002026), Urease, alpha subunit, core (InterPro:IPR017952), Metal-dependent hydrolase, composite (InterPro:IPR011059), Urease, beta subunit (InterPro:IPR002019), Urease (InterPro:IPR008221), Urease, alpha subunit, C-terminal (InterPro:IPR017951), Urease alpha-subunit, N-terminal (InterPro:IPR011612); Has 6424 Blast hits to 6422 proteins in 712 species: Archae - 66; Bacteria - 4218; Metazoa - 14; Fungi - 176; Plants - 32; Viruses - 0; Other Eukaryotes - 1918 (source: NCBI BLink).  protein_id AT1G67550.1p  transcript_id AT1G67550.1  protein_id AT1G67550.1p  transcript_id AT1G67550.1  
At1g67560	chr1:025319926	0.0	W/25319926-25320304,25321136-25321410,25321488-25321722,25321845-25322177,25322271-25322356,25322431-25322544,25322615-25322919,25323004-25323270,25323358-25324117	AT1G67560.1  CDS  gene_syn F12B7.11, F12B7_11  go_component chloroplast|GO:0009507|15028209|IDA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function lipoxygenase activity|GO:0016165||IEA  go_function oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|GO:0016702||IEA  go_function metal ion binding|GO:0046872||IEA  go_process growth|GO:0040007||ISS  go_function lipoxygenase activity|GO:0016165||ISS  product lipoxygenase family protein  note lipoxygenase family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding; INVOLVED IN: growth; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Lipoxygenase, C-terminal (InterPro:IPR013819), Lipoxygenase (InterPro:IPR000907), Lipoxygenase, plant (InterPro:IPR001246); BEST Arabidopsis thaliana protein match is: lipoxygenase, putative (TAIR:AT1G72520.1); Has 1115 Blast hits to 1100 proteins in 148 species: Archae - 0; Bacteria - 67; Metazoa - 487; Fungi - 37; Plants - 508; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G67560.1p  transcript_id AT1G67560.1  protein_id AT1G67560.1p  transcript_id AT1G67560.1  
At1g67570	chr1:025325318	0.0	W/25325318-25325794,25325885-25326316,25326393-25326711,25326796-25326938	AT1G67570.1  CDS  gene_syn F12B7.12, F12B7_12  go_component nucleus|GO:0005634|18433157|IDA  product unknown protein  note unknown protein; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G50630.1); Has 81 Blast hits to 81 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G67570.1p  transcript_id AT1G67570.1  protein_id AT1G67570.1p  transcript_id AT1G67570.1  
At1g67580	chr1:025329251	0.0	C/25329251-25330965,25328582-25328717,25328407-25328495,25328103-25328214,25327903-25328009,25327727-25327826	AT1G67580.1  CDS  gene_syn F12B7.13, F12B7_13  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G63370.1); Has 92767 Blast hits to 91390 proteins in 2867 species: Archae - 49; Bacteria - 7597; Metazoa - 40981; Fungi - 8664; Plants - 17137; Viruses - 589; Other Eukaryotes - 17750 (source: NCBI BLink).  protein_id AT1G67580.1p  transcript_id AT1G67580.1  protein_id AT1G67580.1p  transcript_id AT1G67580.1  
At1g67580	chr1:025329251	0.0	C/25329251-25330965,25328582-25328717,25328407-25328495,25328103-25328214,25327903-25328009,25327727-25327826	AT1G67580.2  CDS  gene_syn F12B7.13, F12B7_13  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G63370.1).  protein_id AT1G67580.2p  transcript_id AT1G67580.2  protein_id AT1G67580.2p  transcript_id AT1G67580.2  
At1g67590	chr1:025333733	0.0	C/25333733-25334472,25333551-25333639,25333255-25333352	AT1G67590.2  CDS  gene_syn F12B7.14, F12B7_14  go_component nucleus|GO:0005634|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product remorin family protein  note remorin family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal region (InterPro:IPR005516); BEST Arabidopsis thaliana protein match is: remorin family protein (TAIR:AT2G02170.2); Has 216 Blast hits to 215 proteins in 30 species: Archae - 0; Bacteria - 19; Metazoa - 7; Fungi - 11; Plants - 169; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G67590.2p  transcript_id AT1G67590.2  protein_id AT1G67590.2p  transcript_id AT1G67590.2  
At1g67590	chr1:025333733	0.0	C/25333733-25334472,25333558-25333639,25333137-25333358	AT1G67590.1  CDS  gene_syn F12B7.14, F12B7_14  go_component nucleus|GO:0005634|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product remorin family protein  note remorin family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal region (InterPro:IPR005516); BEST Arabidopsis thaliana protein match is: remorin family protein (TAIR:AT2G02170.2); Has 1469 Blast hits to 1079 proteins in 213 species: Archae - 3; Bacteria - 223; Metazoa - 178; Fungi - 152; Plants - 307; Viruses - 4; Other Eukaryotes - 602 (source: NCBI BLink).  protein_id AT1G67590.1p  transcript_id AT1G67590.1  protein_id AT1G67590.1p  transcript_id AT1G67590.1  
At1g67600	chr1:025337337	0.0	C/25337337-25337455,25337105-25337261,25336865-25337008,25336701-25336772	AT1G67600.1  CDS  gene_syn F12A21.27, F12A21_27  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Acid phosphatase/vanadium-dependent haloperoxidase related (InterPro:IPR003832); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24350.1); Has 627 Blast hits to 627 proteins in 204 species: Archae - 0; Bacteria - 365; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT1G67600.1p  transcript_id AT1G67600.1  protein_id AT1G67600.1p  transcript_id AT1G67600.1  
At1g67610	chr1:025339036	0.0	C/25339036-25340241	AT1G67610.1  pseudogenic_transcript  pseudo  gene_syn F12B7.16  note pseudogene, hypothetical protein  
At1g67620	chr1:025340585	0.0	W/25340585-25340878,25341045-25341129,25341210-25341310,25341696-25341770	AT1G67620.1  CDS  gene_syn F12B7.17, F12B7_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Iojap-related protein (InterPro:IPR004394); Has 3104 Blast hits to 3104 proteins in 983 species: Archae - 0; Bacteria - 1779; Metazoa - 74; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 1217 (source: NCBI BLink).  protein_id AT1G67620.1p  transcript_id AT1G67620.1  protein_id AT1G67620.1p  transcript_id AT1G67620.1  
At1g67623	chr1:025342111	0.0	W/25342111-25342830,25343073-25343243	AT1G67623.1  CDS  gene_syn F12A21.25, F12A21_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74875.1); Has 38 Blast hits to 38 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G67623.1p  transcript_id AT1G67623.1  protein_id AT1G67623.1p  transcript_id AT1G67623.1  
At1g67626	chr1:025343437	0.0	C/25343437-25344066	AT1G67626.1  mRNA_TE_gene  pseudo  gene_syn F12B7.18  note Transposable element gene, pseudogene, hypothetical protein  
At1g67630	chr1:025348206	0.0	C/25348206-25348287,25348044-25348119,25347726-25347860,25347179-25347632,25347011-25347090,25346700-25346775,25346429-25346608,25345880-25345984,25345691-25345786,25345513-25345605,25345380-25345418,25345228-25345269,25345013-25345140,25344811-25344937,25344573-25344722	AT1G67630.1  CDS  gene_syn DNA POLYMERASE ALPHA 2, F12B7.19, F12B7_19, POLA2  gene POLA2  go_process DNA replication|GO:0006260||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed DNA polymerase activity|GO:0003887||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function DNA-directed DNA polymerase activity|GO:0003887||ISS  product POLA2 (DNA POLYMERASE ALPHA 2); DNA binding / DNA-directed DNA polymerase  note DNA POLYMERASE ALPHA 2 (POLA2); FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity; INVOLVED IN: DNA replication; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase alpha/epsilon, subunit B (InterPro:IPR007185), DNA polymerase alpha, subunit B (InterPro:IPR016722); Has 311 Blast hits to 308 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 91; Plants - 20; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT1G67630.1p  transcript_id AT1G67630.1  protein_id AT1G67630.1p  transcript_id AT1G67630.1  
At1g67635	chr1:025349820	0.0	W/25349820-25350152	AT1G67635.1  CDS  gene_syn F12A21.23, F12A21_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: phosphatidylinositol 3- and 4-kinase family protein (TAIR:AT1G27570.2); Has 25 Blast hits to 25 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G67635.1p  transcript_id AT1G67635.1  protein_id AT1G67635.1p  transcript_id AT1G67635.1  
At1g67640	chr1:025353727	0.0	C/25353727-25353908,25353249-25353632,25352658-25353157,25352490-25352581,25352328-25352396,25352128-25352226	AT1G67640.1  CDS  gene_syn F12B7.20, F12B7_20  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_function amine transmembrane transporter activity|GO:0005275||ISS  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product lysine and histidine specific transporter, putative  note lysine and histidine specific transporter, putative; FUNCTIONS IN: amino acid transmembrane transporter activity, amine transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: membrane; EXPRESSED IN: embryo, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, C globular stage; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: LHT2 (LYSINE HISTIDINE TRANSPORTER 2); acidic amino acid transmembrane transporter/ amino acid transmembrane transporter/ neutral amino acid transmembrane transporter (TAIR:AT1G24400.1); Has 2846 Blast hits to 2839 proteins in 231 species: Archae - 7; Bacteria - 94; Metazoa - 1017; Fungi - 498; Plants - 872; Viruses - 0; Other Eukaryotes - 358 (source: NCBI BLink).  protein_id AT1G67640.1p  transcript_id AT1G67640.1  protein_id AT1G67640.1p  transcript_id AT1G67640.1  
At1g67645	chr1:025354910	0.0	W/25354910-25356112	AT1G67645.1  pseudogenic_transcript  pseudo  gene_syn F12B7.21  note pseudogene, hypothetical protein  
At1g67650	chr1:025362272	0.0	C/25362272-25362395,25362036-25362193,25361630-25361973,25361237-25361333,25360873-25361151,25359832-25360785	AT1G67650.1  CDS  gene_syn F12A21.20, F12A21_20  go_component signal recognition particle|GO:0048500||IEA  go_process SRP-dependent cotranslational protein targeting to membrane|GO:0006614||IEA  go_function 7S RNA binding|GO:0008312||IEA  product 7S RNA binding  note 7S RNA binding; FUNCTIONS IN: 7S RNA binding; INVOLVED IN: SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: signal recognition particle; CONTAINS InterPro DOMAIN/s: Signal recognition particle, SRP72 subunit, RNA-binding (InterPro:IPR013699); BEST Arabidopsis thaliana protein match is: 7S RNA binding (TAIR:AT1G67680.1); Has 337 Blast hits to 330 proteins in 142 species: Archae - 2; Bacteria - 19; Metazoa - 144; Fungi - 93; Plants - 15; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT1G67650.1p  transcript_id AT1G67650.1  protein_id AT1G67650.1p  transcript_id AT1G67650.1  
At1g67660	chr1:025363587	0.0	W/25363587-25363689,25364105-25365069	AT1G67660.1  CDS  gene_syn F12A21.19, F12A21_19  go_function DNA binding|GO:0003677||IEA  go_function nuclease activity|GO:0004518||IEA  go_process biological_process|GO:0008150||ND  product DNA binding / nuclease  note DNA binding / nuclease; FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Putative phage-type endonuclease (InterPro:IPR017482), Exonuclease, phage-type/RecB, C-terminal (InterPro:IPR011604), Restriction endonuclease, type II-like, core (InterPro:IPR011335); BEST Arabidopsis thaliana protein match is: DNA binding / nuclease (TAIR:AT1G13810.1); Has 366 Blast hits to 366 proteins in 59 species: Archae - 0; Bacteria - 65; Metazoa - 25; Fungi - 0; Plants - 35; Viruses - 27; Other Eukaryotes - 214 (source: NCBI BLink).  protein_id AT1G67660.1p  transcript_id AT1G67660.1  protein_id AT1G67660.1p  transcript_id AT1G67660.1  
At1g67660	chr1:025364152	0.0	W/25364152-25365069	AT1G67660.2  CDS  gene_syn F12A21.19, F12A21_19  go_component chloroplast|GO:0009507||IEA  go_function DNA binding|GO:0003677||IEA  go_function nuclease activity|GO:0004518||IEA  go_process biological_process|GO:0008150||ND  product DNA binding / nuclease  note DNA binding / nuclease; FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Putative phage-type endonuclease (InterPro:IPR017482), Exonuclease, phage-type/RecB, C-terminal (InterPro:IPR011604), Restriction endonuclease, type II-like, core (InterPro:IPR011335); BEST Arabidopsis thaliana protein match is: DNA binding / nuclease (TAIR:AT1G13810.1); Has 366 Blast hits to 366 proteins in 59 species: Archae - 0; Bacteria - 65; Metazoa - 25; Fungi - 0; Plants - 35; Viruses - 27; Other Eukaryotes - 214 (source: NCBI BLink).  protein_id AT1G67660.2p  transcript_id AT1G67660.2  protein_id AT1G67660.2p  transcript_id AT1G67660.2  
At1g67670	chr1:025365473	0.0	W/25365473-25365667	AT1G67670.1  CDS  gene_syn F12A21.18, F12A21_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G67670.1p  transcript_id AT1G67670.1  protein_id AT1G67670.1p  transcript_id AT1G67670.1  
At1g67680	chr1:025368329	0.0	C/25368329-25368464,25368082-25368248,25367652-25368004,25367371-25367473,25367002-25367283,25365962-25366915	AT1G67680.1  CDS  gene_syn F12A21.17, F12A21_17  go_component signal recognition particle|GO:0048500||IEA  go_process SRP-dependent cotranslational protein targeting to membrane|GO:0006614||IEA  go_function 7S RNA binding|GO:0008312||IEA  product 7S RNA binding  note 7S RNA binding; FUNCTIONS IN: 7S RNA binding; INVOLVED IN: SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: signal recognition particle; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Signal recognition particle, SRP72 subunit, RNA-binding (InterPro:IPR013699); BEST Arabidopsis thaliana protein match is: 7S RNA binding (TAIR:AT1G67650.1); Has 525 Blast hits to 512 proteins in 165 species: Archae - 12; Bacteria - 42; Metazoa - 217; Fungi - 108; Plants - 25; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).  protein_id AT1G67680.1p  transcript_id AT1G67680.1  protein_id AT1G67680.1p  transcript_id AT1G67680.1  
At1g67690	chr1:025369086	0.0	W/25369086-25369245,25369353-25369477,25369565-25369728,25369824-25369914,25370477-25370656,25370772-25370852,25371035-25371115,25371203-25371295,25371372-25371452,25371528-25371690,25371832-25371952,25372039-25372111,25372252-25372359,25372471-25372568,25372654-25372699,25372791-25372887,25373120-25373193,25373274-25373378,25373451-25373531,25373620-25373730	AT1G67690.1  CDS  gene_syn F12A21.16  go_process proteolysis|GO:0006508||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_component cellular_component|GO:0005575||ND  go_process proteolysis|GO:0006508||ISS  go_function metalloendopeptidase activity|GO:0004222||ISS  product metalloendopeptidase  note metalloendopeptidase; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M3A and M3B, thimet/oligopeptidase F (InterPro:IPR001567); BEST Arabidopsis thaliana protein match is: metalloendopeptidase (TAIR:AT5G51540.1); Has 3540 Blast hits to 3528 proteins in 855 species: Archae - 4; Bacteria - 1805; Metazoa - 290; Fungi - 298; Plants - 50; Viruses - 0; Other Eukaryotes - 1093 (source: NCBI BLink).  protein_id AT1G67690.1p  transcript_id AT1G67690.1  protein_id AT1G67690.1p  transcript_id AT1G67690.1  
At1g67700	chr1:025374295	0.0	W/25374295-25374567,25374959-25375096,25375195-25375281,25375406-25375453,25375570-25375712,25375804-25375810	AT1G67700.2  CDS  gene_syn F12A21.32  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G67700.2p  transcript_id AT1G67700.2  protein_id AT1G67700.2p  transcript_id AT1G67700.2  
At1g67700	chr1:025374295	0.0	W/25374295-25374567,25374959-25375096,25375195-25375281,25375406-25375453,25375570-25375716	AT1G67700.1  CDS  gene_syn F12A21.32  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G67700.1p  transcript_id AT1G67700.1  protein_id AT1G67700.1p  transcript_id AT1G67700.1  
At1g67710	chr1:025378797	0.0	C/25378797-25378905,25378563-25378715,25378099-25378488,25377918-25377994,25376994-25377830	AT1G67710.1  CDS  gene_syn ARR11, F12A21.15, F12A21_15, RESPONSE REGULATOR 11  gene ARR11  function Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway.  go_process response to cytokinin stimulus|GO:0009735|16227453|IGI  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_function two-component response regulator activity|GO:0000156|12068096|ISS  go_function two-component response regulator activity|GO:0000156||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12610214|IDA  product ARR11 (RESPONSE REGULATOR 11); transcription factor/ two-component response regulator  note RESPONSE REGULATOR 11 (ARR11); FUNCTIONS IN: transcription factor activity, two-component response regulator activity; INVOLVED IN: cytokinin mediated signaling, response to cytokinin stimulus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Response regulator, plant B-type (InterPro:IPR017053), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), CheY-like (InterPro:IPR011006), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Signal transduction response regulator, receiver region (InterPro:IPR001789), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1); transcription factor/ two-component response regulator (TAIR:AT3G16857.2); Has 66573 Blast hits to 65560 proteins in 1807 species: Archae - 539; Bacteria - 55702; Metazoa - 23; Fungi - 549; Plants - 1493; Viruses - 3; Other Eukaryotes - 8264 (source: NCBI BLink).  protein_id AT1G67710.1p  transcript_id AT1G67710.1  protein_id AT1G67710.1p  transcript_id AT1G67710.1  
At1g67720	chr1:025386494	0.0	W/25386494-25386566,25386872-25387409,25387500-25388011,25388140-25388272,25388365-25388436,25388523-25388591,25388681-25388752,25388830-25388898,25389099-25389256,25389331-25389584,25389660-25389786,25389869-25389934,25390019-25390205,25390281-25390413,25390530-25390856	AT1G67720.1  CDS  gene_syn F12A21.30  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||ISS  go_function protein binding|GO:0005515||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat family protein / protein kinase family protein  note leucine-rich repeat family protein / protein kinase family protein; FUNCTIONS IN: protein binding, protein kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: kinase (TAIR:AT2G37050.3); Has 117978 Blast hits to 93841 proteins in 3311 species: Archae - 83; Bacteria - 8788; Metazoa - 41026; Fungi - 7271; Plants - 43283; Viruses - 478; Other Eukaryotes - 17049 (source: NCBI BLink).  protein_id AT1G67720.1p  transcript_id AT1G67720.1  protein_id AT1G67720.1p  transcript_id AT1G67720.1  
At1g67730	chr1:025391676	0.0	W/25391676-25392307,25392403-25392472,25393111-25393365	AT1G67730.1  CDS  gene_syn F12A21.14, F12A21_14, YBR159  gene YBR159  go_component membrane|GO:0016020|17432890|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process cuticle development|GO:0042335|9342868|ISS  go_function oxidoreductase activity|GO:0016491||ISS  go_function ketoreductase activity|GO:0045703|11792704|IDA  product YBR159; ketoreductase/ oxidoreductase  note YBR159; FUNCTIONS IN: oxidoreductase activity, ketoreductase activity; INVOLVED IN: cuticle development; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT1G24470.1); Has 57714 Blast hits to 57617 proteins in 2031 species: Archae - 375; Bacteria - 33449; Metazoa - 4558; Fungi - 2713; Plants - 1274; Viruses - 0; Other Eukaryotes - 15345 (source: NCBI BLink).  protein_id AT1G67730.1p  transcript_id AT1G67730.1  protein_id AT1G67730.1p  transcript_id AT1G67730.1  
At1g67740	chr1:025394429	0.0	C/25394429-25394998	AT1G67740.1  CDS  gene_syn F12A21.13, F12A21_13, PSBY, PSBY-1, PSBY-2, YCF32  gene PSBY  function PsbY precursor (psbY) mRNA. This single nuclear gene is imported into the chloroplasts where it is processed into two integral membrane proteins with identical topology (PsbY-1 and PsbY-2). The protein appears to bind manganese but its role is not well understood.  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component photosystem II|GO:0009523|9512354|ISS  go_component chloroplast stromal thylakoid|GO:0009533|9933598|IDA  go_component chloroplast photosystem II|GO:0030095||ISS  go_process photosynthesis|GO:0015979||ISS  go_process photosynthesis|GO:0015979||TAS  product PSBY  note PSBY; INVOLVED IN: photosynthesis; LOCATED IN: chloroplast stromal thylakoid, chloroplast thylakoid membrane, chloroplast photosystem II, photosystem II; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 91 Blast hits to 59 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G67740.1p  transcript_id AT1G67740.1  protein_id AT1G67740.1p  transcript_id AT1G67740.1  
At1g67750	chr1:025401660	0.0	W/25401660-25401784,25401876-25402616,25402712-25402850,25402944-25403165	AT1G67750.1  CDS  gene_syn F12A21.12, F12A21_12  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function pectate lyase activity|GO:0030570||ISS  product pectate lyase family protein  note pectate lyase family protein; FUNCTIONS IN: pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: pectate lyase family protein (TAIR:AT4G24780.1); Has 983 Blast hits to 980 proteins in 166 species: Archae - 0; Bacteria - 418; Metazoa - 0; Fungi - 154; Plants - 399; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G67750.1p  transcript_id AT1G67750.1  protein_id AT1G67750.1p  transcript_id AT1G67750.1  
At1g67760	chr1:025405955	0.0	C/25405955-25406272,25405814-25405858	AT1G67760.1  CDS  gene_syn F12A21.11, F12A21_11  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process response to salt stress|GO:0009651|11351099|IEP  product ATP binding / protein binding / unfolded protein binding  note ATP binding / protein binding / unfolded protein binding; FUNCTIONS IN: unfolded protein binding, protein binding, ATP binding; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), T-complex protein 1, epsilon subunit (InterPro:IPR012718); BEST Arabidopsis thaliana protein match is: T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative (TAIR:AT1G24510.1); Has 767 Blast hits to 665 proteins in 236 species: Archae - 251; Bacteria - 0; Metazoa - 166; Fungi - 119; Plants - 66; Viruses - 0; Other Eukaryotes - 165 (source: NCBI BLink).  protein_id AT1G67760.1p  transcript_id AT1G67760.1  protein_id AT1G67760.1p  transcript_id AT1G67760.1  
At1g67770	chr1:025408043	0.0	W/25408043-25408661,25408741-25409167,25409455-25409577,25409660-25409804,25409884-25410153	AT1G67770.1  CDS  gene_syn F12A21.10, F12A21_10, TEL2, TERMINAL EAR1-LIKE 2  gene TEL2  function Similar to terminal ear1 in Zea mays. A member of mei2-like gene family; phylogenetic analysis revealed that TEL2 belongs to the third clade of mei2-like proteins (TEL clade), with conserved two N-terminal RNA recognition motifs (RRM), in addition to the C-terminal RRM, shared among all mei2-like proteins. Expression patterns were similar to TEL1, with lower expression levels in most tissues examined.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||ISS  product TEL2 (TERMINAL EAR1-LIKE 2); RNA binding / nucleic acid binding / nucleotide binding  note TERMINAL EAR1-LIKE 2 (TEL2); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), RNA recognition motif 2 (InterPro:IPR007201), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: TEL1 (TERMINAL EAR1-LIKE 1); RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT3G26120.1); Has 10010 Blast hits to 5908 proteins in 442 species: Archae - 16; Bacteria - 606; Metazoa - 4049; Fungi - 993; Plants - 2515; Viruses - 480; Other Eukaryotes - 1351 (source: NCBI BLink).  protein_id AT1G67770.1p  transcript_id AT1G67770.1  protein_id AT1G67770.1p  transcript_id AT1G67770.1  
At1g67775	chr1:025411436	0.0	C/25411436-25411696	AT1G67775.1  CDS  gene_syn CLAVATA3/ESR-RELATED 8, CLE8  gene CLE8  function Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.  go_component apoplast|GO:0048046|11457943|RCA  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515|11457943|ISS  product CLE8 (CLAVATA3/ESR-RELATED 8); protein binding  note CLAVATA3/ESR-RELATED 8 (CLE8); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G67775.1p  transcript_id AT1G67775.1  protein_id AT1G67775.1p  transcript_id AT1G67775.1  
At1g67780	chr1:025412816	0.0	W/25412816-25412926,25413182-25413279,25413362-25413448,25413527-25413735,25413895-25414091,25414181-25414323,25414414-25414602,25414688-25414778,25414850-25415018,25415097-25415207,25415295-25415391,25415485-25415530	AT1G67780.1  CDS  gene_syn F12A21.9, F12A21_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, flower, root, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: DDT superfamily (InterPro:IPR018501), DDT subgroup (InterPro:IPR018500), Cell division cycle-associated protein (InterPro:IPR018866); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67270.1); Has 280 Blast hits to 277 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 114; Fungi - 47; Plants - 92; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT1G67780.1p  transcript_id AT1G67780.1  protein_id AT1G67780.1p  transcript_id AT1G67780.1  
At1g67785	chr1:025416880	0.0	C/25416880-25416984,25416100-25416186	AT1G67785.1  CDS  go_component mitochondrion|GO:0005739|12837548|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, respiratory chain complex I; Has 18 Blast hits to 18 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G67785.1p  transcript_id AT1G67785.1  protein_id AT1G67785.1p  transcript_id AT1G67785.1  
At1g67792	chr1:025417609	0.0	W/25417609-25420229	AT1G67792.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G67790  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G67792.1  
At1g67790	chr1:025419950	0.0	C/25419950-25420099,25419768-25419866,25419255-25419692,25417542-25418585	AT1G67790.1  CDS  gene_syn F12A21.8, F12A21_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf apex, hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 98 Blast hits to 57 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G67790.1p  transcript_id AT1G67790.1  protein_id AT1G67790.1p  transcript_id AT1G67790.1  
At1g67800	chr1:025423001	0.0	C/25423001-25423237,25422815-25422899,25422601-25422741,25422404-25422517,25422218-25422315,25422016-25422095,25421833-25421938,25421598-25421725,25421337-25421505,25421196-25421258,25421029-25421109	AT1G67800.1  CDS  gene_syn F12A21.7, F12A21_7  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  product copine-related  note copine-related; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Copine (InterPro:IPR010734), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: RGLG2 (RING domain Ligase2); ubiquitin-protein ligase (TAIR:AT5G14420.4); Has 1143 Blast hits to 1139 proteins in 97 species: Archae - 0; Bacteria - 0; Metazoa - 780; Fungi - 2; Plants - 159; Viruses - 10; Other Eukaryotes - 192 (source: NCBI BLink).  protein_id AT1G67800.1p  transcript_id AT1G67800.1  protein_id AT1G67800.1p  transcript_id AT1G67800.1  
At1g67800	chr1:025423001	0.0	C/25423001-25423237,25422815-25422899,25422601-25422741,25422404-25422517,25422218-25422315,25422016-25422095,25421833-25421938,25421598-25421725,25421337-25421505,25421196-25421258,25421029-25421109	AT1G67800.3  CDS  gene_syn F12A21.7, F12A21_7  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  product copine-related  note copine-related; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Copine (InterPro:IPR010734), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: RGLG2 (RING domain Ligase2); ubiquitin-protein ligase (TAIR:AT5G14420.4); Has 1143 Blast hits to 1139 proteins in 97 species: Archae - 0; Bacteria - 0; Metazoa - 780; Fungi - 2; Plants - 159; Viruses - 10; Other Eukaryotes - 192 (source: NCBI BLink).  protein_id AT1G67800.3p  transcript_id AT1G67800.3  protein_id AT1G67800.3p  transcript_id AT1G67800.3  
At1g67800	chr1:025423001	0.0	C/25423001-25423237,25422815-25422899,25422601-25422741,25422404-25422517,25422218-25422315,25422016-25422095,25421833-25421938,25421598-25421725,25421337-25421505,25421196-25421258,25421029-25421109	AT1G67800.4  CDS  gene_syn F12A21.7, F12A21_7  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  product copine-related  note copine-related; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Copine (InterPro:IPR010734), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: RGLG2 (RING domain Ligase2); ubiquitin-protein ligase (TAIR:AT5G14420.4); Has 1143 Blast hits to 1139 proteins in 97 species: Archae - 0; Bacteria - 0; Metazoa - 780; Fungi - 2; Plants - 159; Viruses - 10; Other Eukaryotes - 192 (source: NCBI BLink).  protein_id AT1G67800.4p  transcript_id AT1G67800.4  protein_id AT1G67800.4p  transcript_id AT1G67800.4  
At1g67800	chr1:025423001	0.0	C/25423001-25423297,25422815-25422899,25422601-25422741,25422404-25422517,25422218-25422315,25422016-25422095,25421833-25421938,25421598-25421725,25421337-25421505,25421196-25421258,25421029-25421109	AT1G67800.2  CDS  gene_syn F12A21.7, F12A21_7  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  product copine-related  note copine-related; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Copine (InterPro:IPR010734), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: RGLG2 (RING domain Ligase2); ubiquitin-protein ligase (TAIR:AT5G14420.4); Has 1143 Blast hits to 1139 proteins in 97 species: Archae - 0; Bacteria - 0; Metazoa - 780; Fungi - 2; Plants - 159; Viruses - 10; Other Eukaryotes - 192 (source: NCBI BLink).  protein_id AT1G67800.2p  transcript_id AT1G67800.2  protein_id AT1G67800.2p  transcript_id AT1G67800.2  
At1g67810	chr1:025426488	0.0	W/25426488-25427264	AT1G67810.1  CDS  gene_syn F12A21.6, F12A21_6, SUFE2, SULFUR E 2  gene SUFE2  function Encodes a protein capable of stimulating the cysteine desulfurase activity of CpNifS (AT1G08490) in vitro. SufE2:GFP localizes to the chloroplasts where it is likely to play a role in iron-sulfur cluster assembly. Transcript levels for this gene are high in the pollen relative to other organs based on RT-PCR analysis.  go_component chloroplast|GO:0009507|17452319|IDA  go_process iron-sulfur cluster assembly|GO:0016226|17452319|IC  go_process positive regulation of sulfur metabolic process|GO:0051176|17452319|IDA  go_function enzyme activator activity|GO:0008047|17452319|IDA  product SUFE2 (SULFUR E 2); enzyme activator  note SULFUR E 2 (SUFE2); FUNCTIONS IN: enzyme activator activity; INVOLVED IN: positive regulation of sulfur metabolic process, iron-sulfur cluster assembly; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Fe-S metabolism associated SufE (InterPro:IPR003808); BEST Arabidopsis thaliana protein match is: QS (QUINOLINATE SYNTHASE); 4 iron, 4 sulfur cluster binding / enzyme activator/ protein homodimerization/ quinolinate synthetase A (TAIR:AT5G50210.1); Has 1623 Blast hits to 1623 proteins in 441 species: Archae - 0; Bacteria - 960; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 614 (source: NCBI BLink).  protein_id AT1G67810.1p  transcript_id AT1G67810.1  protein_id AT1G67810.1p  transcript_id AT1G67810.1  
At1g67820	chr1:025429882	0.0	W/25429882-25430328,25430419-25430589,25430673-25430843,25430936-25431484	AT1G67820.1  CDS  gene_syn F12A21.5, F12A21_5  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C, N-terminal (InterPro:IPR014045), Protein phosphatase 2C (InterPro:IPR015655); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT2G30020.1); Has 4464 Blast hits to 4328 proteins in 256 species: Archae - 0; Bacteria - 49; Metazoa - 1495; Fungi - 549; Plants - 1358; Viruses - 9; Other Eukaryotes - 1004 (source: NCBI BLink).  protein_id AT1G67820.1p  transcript_id AT1G67820.1  protein_id AT1G67820.1p  transcript_id AT1G67820.1  
At1g67830	chr1:025432741	0.0	C/25432741-25432972,25432287-25432666,25431705-25432211	AT1G67830.1  CDS  gene_syn ATFXG1, F12A21.4, F12A21_4, alpha-fucosidase 1  gene ATFXG1  function Encodes a protein with & 945;-fucosidase activity. The activity was assessed on 2 -fucosyl-lactitol. AtFXG1 was able to remove the t-fucosyl residues of XXFG xyloglucan oligosaccharides.  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function alpha-L-fucosidase activity|GO:0004560|11788770|IDA  product ATFXG1 (alpha-fucosidase 1); alpha-L-fucosidase/ carboxylesterase  note alpha-fucosidase 1 (ATFXG1); FUNCTIONS IN: alpha-L-fucosidase activity, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT3G26430.1); Has 1621 Blast hits to 1592 proteins in 71 species: Archae - 0; Bacteria - 46; Metazoa - 1; Fungi - 2; Plants - 1572; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G67830.1p  transcript_id AT1G67830.1  protein_id AT1G67830.1p  transcript_id AT1G67830.1  
At1g67840	chr1:025434156	0.0	W/25434156-25434572,25434661-25434822,25434899-25435201,25435308-25435373,25435476-25435544,25435633-25435725,25435894-25436099,25436195-25436216	AT1G67840.2  CDS  gene_syn CHLOROPLAST SENSOR KINASE, CSK, F12A21.3, F12A21_3  gene CSK  function Encodes a chloroplast sensor kinase (CSK) that shares common ancestors with cyanobacterial histidine sensor kinases. CSK is synthesised in the cytosol and imported into the chloroplast as a protein precusor. CSK is autophosphorylated and required for control of transcription of chloroplast genes by the redox state of an electron carrier connecting photosystems I and II.  go_component chloroplast|GO:0009507|18632566|IDA  go_component chloroplast stroma|GO:0009570|18632566|IDA  go_process regulation of gene expression|GO:0010468|18632566|IMP  go_process protein amino acid autophosphorylation|GO:0046777|18632566|IDA  go_process photosystem stoichiometry adjustment|GO:0080005|18632566|IMP  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301|18632566|IDA  product CSK (CHLOROPLAST SENSOR KINASE); ATP binding / kinase  note CHLOROPLAST SENSOR KINASE (CSK); FUNCTIONS IN: kinase activity, ATP binding; INVOLVED IN: regulation of gene expression, protein amino acid autophosphorylation, photosystem stoichiometry adjustment; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region (InterPro:IPR003661); Has 60 Blast hits to 60 proteins in 29 species: Archae - 0; Bacteria - 39; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G67840.2p  transcript_id AT1G67840.2  protein_id AT1G67840.2p  transcript_id AT1G67840.2  
At1g67840	chr1:025434156	0.0	W/25434156-25434572,25434661-25434822,25434899-25435201,25435308-25435373,25435476-25435544,25435633-25435725,25435894-25436099,25436199-25436472,25436594-25436839	AT1G67840.1  CDS  gene_syn CHLOROPLAST SENSOR KINASE, CSK, F12A21.3, F12A21_3  gene CSK  function Encodes a chloroplast sensor kinase (CSK) that shares common ancestors with cyanobacterial histidine sensor kinases. CSK is synthesised in the cytosol and imported into the chloroplast as a protein precusor. CSK is autophosphorylated and required for control of transcription of chloroplast genes by the redox state of an electron carrier connecting photosystems I and II.  go_component chloroplast|GO:0009507|18632566|IDA  go_component chloroplast stroma|GO:0009570|18632566|IDA  go_process regulation of gene expression|GO:0010468|18632566|IMP  go_process protein amino acid autophosphorylation|GO:0046777|18632566|IDA  go_process photosystem stoichiometry adjustment|GO:0080005|18632566|IMP  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301|18632566|IDA  product CSK (CHLOROPLAST SENSOR KINASE); ATP binding / kinase  note CHLOROPLAST SENSOR KINASE (CSK); FUNCTIONS IN: kinase activity, ATP binding; INVOLVED IN: regulation of gene expression, protein amino acid autophosphorylation, photosystem stoichiometry adjustment; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATP-binding region, ATPase-like (InterPro:IPR003594); Has 523 Blast hits to 523 proteins in 196 species: Archae - 0; Bacteria - 477; Metazoa - 0; Fungi - 1; Plants - 22; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G67840.1p  transcript_id AT1G67840.1  protein_id AT1G67840.1p  transcript_id AT1G67840.1  
At1g67850	chr1:025439204	0.0	W/25439204-25439223,25439319-25439430,25439522-25439671,25440078-25440182,25440256-25440339,25440407-25440522,25440610-25440711,25440801-25440914,25441004-25441060,25441157-25441223,25441322-25441375,25441485-25441559,25441637-25441672,25441782-25441904	AT1G67850.1  CDS  gene_syn F12A21.2, F12A21_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13000.2); Has 193 Blast hits to 192 proteins in 15 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 179; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G67850.1p  transcript_id AT1G67850.1  protein_id AT1G67850.1p  transcript_id AT1G67850.1  
At1g67850	chr1:025439204	0.0	W/25439204-25439223,25439319-25439430,25439522-25439671,25440078-25440182,25440256-25440339,25440407-25440522,25440610-25440711,25440801-25440914,25441004-25441060,25441157-25441223,25441322-25441375,25441485-25441559,25441637-25441672,25441782-25441904	AT1G67850.2  CDS  gene_syn F12A21.2, F12A21_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13000.2); Has 193 Blast hits to 192 proteins in 15 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 179; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G67850.2p  transcript_id AT1G67850.2  protein_id AT1G67850.2p  transcript_id AT1G67850.2  
At1g67856	chr1:025442486	0.0	W/25442486-25442887	AT1G67856.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G24580.1); Has 3925 Blast hits to 3916 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 1142; Fungi - 305; Plants - 1895; Viruses - 19; Other Eukaryotes - 564 (source: NCBI BLink).  protein_id AT1G67856.1p  transcript_id AT1G67856.1  protein_id AT1G67856.1p  transcript_id AT1G67856.1  
At1g67855	chr1:025442504	0.0	C/25442504-25442598,25442316-25442349	AT1G67855.1  CDS  gene_syn F12A21.1, F12A21_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G67855.1p  transcript_id AT1G67855.1  protein_id AT1G67855.1p  transcript_id AT1G67855.1  
At1g67860	chr1:025444940	0.0	C/25444940-25445176	AT1G67860.1  CDS  gene_syn T23K23.29, T23K23_29  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67865.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G67860.1p  transcript_id AT1G67860.1  protein_id AT1G67860.1p  transcript_id AT1G67860.1  
At1g67865	chr1:025446460	0.0	C/25446460-25446687	AT1G67865.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G67865.1p  transcript_id AT1G67865.1  protein_id AT1G67865.1p  transcript_id AT1G67865.1  
At1g67870	chr1:025450617	0.0	C/25450617-25450943,25449593-25450105	AT1G67870.1  CDS  gene_syn T23K23.28, T23K23_28  go_process biological_process|GO:0008150||ND  product glycine-rich protein  note glycine-rich protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 8132 Blast hits to 3643 proteins in 407 species: Archae - 12; Bacteria - 1110; Metazoa - 4472; Fungi - 365; Plants - 453; Viruses - 11; Other Eukaryotes - 1709 (source: NCBI BLink).  protein_id AT1G67870.1p  transcript_id AT1G67870.1  protein_id AT1G67870.1p  transcript_id AT1G67870.1  
At1g67875	chr1:025452699	0.0	W/25452699-25452893	AT1G67875.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G67875.1p  transcript_id AT1G67875.1  protein_id AT1G67875.1p  transcript_id AT1G67875.1  
At1g67880	chr1:025455382	0.0	C/25455382-25455453,25454081-25455181	AT1G67880.1  CDS  gene_syn T23K23.27, T23K23_27  go_component membrane|GO:0016020||IEA  go_process protein amino acid N-linked glycosylation|GO:0006487||IEA  go_function acetylglucosaminyltransferase activity|GO:0008375||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyl transferase family 17 protein  note glycosyl transferase family 17 protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: protein amino acid N-linked glycosylation; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 17 (InterPro:IPR006813); BEST Arabidopsis thaliana protein match is: glycosyl transferase family 17 protein (TAIR:AT1G12990.1); Has 882 Blast hits to 881 proteins in 59 species: Archae - 0; Bacteria - 22; Metazoa - 50; Fungi - 23; Plants - 70; Viruses - 4; Other Eukaryotes - 713 (source: NCBI BLink).  protein_id AT1G67880.1p  transcript_id AT1G67880.1  protein_id AT1G67880.1p  transcript_id AT1G67880.1  
At1g67890	chr1:025457345	0.0	W/25457345-25457721,25457925-25458375,25458455-25459112,25459246-25459286,25459401-25459469,25459727-25459827,25459936-25460014,25460145-25460243,25460759-25460824,25460931-25460980,25461065-25461146,25461584-25461678,25462307-25462436	AT1G67890.1  CDS  gene_syn T23K23.26, T23K23_26  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: signal transduction, protein amino acid phosphorylation, regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAS fold (InterPro:IPR013767), Serine/threonine protein kinase (InterPro:IPR002290), PAS (InterPro:IPR000014), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G49470.2); Has 93435 Blast hits to 92007 proteins in 3422 species: Archae - 193; Bacteria - 9066; Metazoa - 40989; Fungi - 7531; Plants - 18909; Viruses - 484; Other Eukaryotes - 16263 (source: NCBI BLink).  protein_id AT1G67890.1p  transcript_id AT1G67890.1  protein_id AT1G67890.1p  transcript_id AT1G67890.1  
At1g67890	chr1:025457345	0.0	W/25457345-25457721,25457925-25458375,25458455-25459112,25459246-25459286,25459401-25459469,25459727-25459827,25459936-25460014,25460145-25460243,25460759-25460824,25460931-25460980,25461065-25461146,25461584-25461727	AT1G67890.2  CDS  gene_syn T23K23.26, T23K23_26  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: signal transduction, protein amino acid phosphorylation, regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Protein kinase, core (InterPro:IPR000719), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G49470.2); Has 92757 Blast hits to 91395 proteins in 3420 species: Archae - 193; Bacteria - 9004; Metazoa - 40663; Fungi - 7482; Plants - 18852; Viruses - 482; Other Eukaryotes - 16081 (source: NCBI BLink).  protein_id AT1G67890.2p  transcript_id AT1G67890.2  protein_id AT1G67890.2p  transcript_id AT1G67890.2  
At1g67900	chr1:025467737	0.0	W/25467737-25467795,25467883-25467952,25468039-25469283,25469367-25469888	AT1G67900.1  CDS  gene_syn T23K23.25, T23K23_25  go_process response to light stimulus|GO:0009416||IEA  go_function signal transducer activity|GO:0004871||IEA  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process response to light stimulus|GO:0009416||ISS  go_function signal transducer activity|GO:0004871||ISS  product phototropic-responsive NPH3 family protein  note phototropic-responsive NPH3 family protein; FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: phototropic-responsive NPH3 family protein (TAIR:AT3G26490.1); Has 426 Blast hits to 417 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 423; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G67900.1p  transcript_id AT1G67900.1  protein_id AT1G67900.1p  transcript_id AT1G67900.1  
At1g67900	chr1:025467737	0.0	W/25467737-25467795,25467883-25467952,25468039-25469283,25469367-25469888	AT1G67900.2  CDS  gene_syn T23K23.25, T23K23_25  go_process response to light stimulus|GO:0009416||IEA  go_function signal transducer activity|GO:0004871||IEA  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process response to light stimulus|GO:0009416||ISS  go_function signal transducer activity|GO:0004871||ISS  product phototropic-responsive NPH3 family protein  note phototropic-responsive NPH3 family protein; FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: phototropic-responsive NPH3 family protein (TAIR:AT3G26490.1); Has 426 Blast hits to 417 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 423; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G67900.2p  transcript_id AT1G67900.2  protein_id AT1G67900.2p  transcript_id AT1G67900.2  
At1g67910	chr1:025471534	0.0	C/25471534-25471809	AT1G67910.1  CDS  gene_syn T23K23.24, T23K23_24  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 90 Blast hits to 90 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G67910.1p  transcript_id AT1G67910.1  protein_id AT1G67910.1p  transcript_id AT1G67910.1  
At1g67920	chr1:025473731	0.0	W/25473731-25473934	AT1G67920.1  CDS  gene_syn T23K23.23, T23K23_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24600.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G67920.1p  transcript_id AT1G67920.1  protein_id AT1G67920.1p  transcript_id AT1G67920.1  
At1g67930	chr1:025476229	0.0	C/25476229-25477332,25475464-25475937,25474218-25475138	AT1G67930.1  CDS  gene_syn T23K23.22, T23K23_22  go_component chloroplast|GO:0009507||IEA  product Golgi transport complex protein-related  note Golgi transport complex protein-related; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 4779 Blast hits to 499 proteins in 108 species: Archae - 0; Bacteria - 75; Metazoa - 660; Fungi - 190; Plants - 36; Viruses - 7; Other Eukaryotes - 3811 (source: NCBI BLink).  protein_id AT1G67930.1p  transcript_id AT1G67930.1  protein_id AT1G67930.1p  transcript_id AT1G67930.1  
At1g67940	chr1:025477805	0.0	W/25477805-25478153,25478225-25478667	AT1G67940.1  CDS  gene_syn ATNAP3, T23K23.21, T23K23_21  gene ATNAP3  function member of NAP subfamily  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process phosphate transport|GO:0006817||IEA  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  product ATNAP3; transporter  note ATNAP3; FUNCTIONS IN: transporter activity; INVOLVED IN: phosphate transport; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphate transport system permease protein 1 (InterPro:IPR005670), ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PGP7 (P-GLYCOPROTEIN 7); ATPase, coupled to transmembrane movement of substances (TAIR:AT5G46540.1); Has 253393 Blast hits to 229326 proteins in 2597 species: Archae - 4493; Bacteria - 167886; Metazoa - 8647; Fungi - 4747; Plants - 2417; Viruses - 16; Other Eukaryotes - 65187 (source: NCBI BLink).  protein_id AT1G67940.1p  transcript_id AT1G67940.1  protein_id AT1G67940.1p  transcript_id AT1G67940.1  
At1g67950	chr1:025479771	0.0	C/25479771-25479778,25479607-25479682,25479446-25479529,25478884-25479375	AT1G67950.4  CDS  gene_syn T23K23.20, T23K23_20  go_process oxidation reduction|GO:0055114||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function nucleic acid binding|GO:0003676||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: oxidoreductase activity, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT4G17720.1); Has 158 Blast hits to 158 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 12; Plants - 138; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G67950.4p  transcript_id AT1G67950.4  protein_id AT1G67950.4p  transcript_id AT1G67950.4  
At1g67950	chr1:025479989	0.0	C/25479989-25480072,25479771-25479874,25479607-25479682,25479446-25479529,25478884-25479375	AT1G67950.2  CDS  gene_syn T23K23.20, T23K23_20  go_process oxidation reduction|GO:0055114||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function nucleic acid binding|GO:0003676||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT5G46870.1); Has 238 Blast hits to 238 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 56; Plants - 142; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G67950.2p  transcript_id AT1G67950.2  protein_id AT1G67950.2p  transcript_id AT1G67950.2  
At1g67950	chr1:025480409	0.0	C/25480409-25480420,25479989-25480057,25479771-25479874,25479607-25479682,25479446-25479529,25478884-25479375	AT1G67950.1  CDS  gene_syn T23K23.20, T23K23_20  go_process oxidation reduction|GO:0055114||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function nucleic acid binding|GO:0003676||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT5G46870.1); Has 238 Blast hits to 238 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 56; Plants - 142; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G67950.1p  transcript_id AT1G67950.1  protein_id AT1G67950.1p  transcript_id AT1G67950.1  
At1g67950	chr1:025480409	0.0	C/25480409-25480420,25479989-25480057,25479771-25479874,25479607-25479682,25479446-25479529,25478884-25479378	AT1G67950.3  CDS  gene_syn T23K23.20, T23K23_20  go_process oxidation reduction|GO:0055114||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function nucleic acid binding|GO:0003676||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT4G17720.1); Has 235 Blast hits to 235 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 54; Plants - 142; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G67950.3p  transcript_id AT1G67950.3  protein_id AT1G67950.3p  transcript_id AT1G67950.3  
At1g67960	chr1:025483540	0.0	C/25483540-25484176,25483295-25483446,25482968-25483071,25482698-25482786,25482391-25482464,25482053-25482203,25481801-25481968,25481508-25481605,25481296-25481418,25481118-25481186,25480808-25481017	AT1G67960.1  CDS  gene_syn T23K23.19, T23K23_19  product unknown protein  note EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Membrane protein,Tapt1/CMV receptor (InterPro:IPR008010); Has 243 Blast hits to 229 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 87; Plants - 18; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT1G67960.1p  transcript_id AT1G67960.1  protein_id AT1G67960.1p  transcript_id AT1G67960.1  
At1g67970	chr1:025486077	0.0	C/25486077-25486313,25484844-25485731	AT1G67970.1  CDS  gene_syn AT-HSFA8, HEAT SHOCK TRANSCRIPTION FACTOR A8, HSFA8, T23K23.18, T23K23_18  gene AT-HSFA8  function member of Heat Stress Transcription Factor (Hsf) family  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AT-HSFA8; DNA binding / transcription factor  note AT-HSFA8; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: HSF1 (HEAT SHOCK FACTOR 1); DNA binding / protein binding / transcription factor (TAIR:AT4G17750.1); Has 1292 Blast hits to 1287 proteins in 155 species: Archae - 0; Bacteria - 3; Metazoa - 265; Fungi - 308; Plants - 458; Viruses - 0; Other Eukaryotes - 258 (source: NCBI BLink).  protein_id AT1G67970.1p  transcript_id AT1G67970.1  protein_id AT1G67970.1p  transcript_id AT1G67970.1  
At1g67980	chr1:025487724	0.0	W/25487724-25487777,25487893-25487978,25488177-25488321,25488426-25488557,25488653-25488934	AT1G67980.1  CDS  gene_syn CCoAMT  gene CCoAMT  function Encodes S-adenosyl-L-methionine: transcaffeoyl Coenzyme A 3-O-methyltransferase.  go_component cytosol|GO:0005829|9484457|TAS  go_process lignin biosynthetic process|GO:0009809|9662519|ISS  go_function caffeoyl-CoA O-methyltransferase activity|GO:0042409|10934215|ISS  go_function caffeoyl-CoA O-methyltransferase activity|GO:0042409|9662519|ISS  product CCoAMT; caffeoyl-CoA O-methyltransferase  note CCoAMT; FUNCTIONS IN: caffeoyl-CoA O-methyltransferase activity; INVOLVED IN: lignin biosynthetic process; LOCATED IN: cytosol; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: O-methyltransferase, family 3 (InterPro:IPR002935); BEST Arabidopsis thaliana protein match is: TSM1; N1,N5,N10-tris-(5-hydroxyferuloyl)spermidine O-methyltransferase/ caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase/ caffeoyl-CoA O-methyltransferase/ tricaffeoyl spermidine:S-adenosyl-L-methionine O-methyltransferase/ trihydroxyferuloyl spermidine:S-adenosyl-L-methionine O-methyltransferase (TAIR:AT1G67990.1); Has 3328 Blast hits to 3325 proteins in 725 species: Archae - 30; Bacteria - 1396; Metazoa - 147; Fungi - 50; Plants - 440; Viruses - 0; Other Eukaryotes - 1265 (source: NCBI BLink).  protein_id AT1G67980.1p  transcript_id AT1G67980.1  protein_id AT1G67980.1p  transcript_id AT1G67980.1  
At1g67980	chr1:025488239	0.0	W/25488239-25488319,25488426-25488557,25488653-25488934	AT1G67980.2  CDS  gene_syn CCoAMT  gene CCoAMT  function Encodes S-adenosyl-L-methionine: transcaffeoyl Coenzyme A 3-O-methyltransferase.  go_component cytosol|GO:0005829|9484457|TAS  go_process lignin biosynthetic process|GO:0009809|9662519|ISS  go_function caffeoyl-CoA O-methyltransferase activity|GO:0042409|10934215|ISS  go_function caffeoyl-CoA O-methyltransferase activity|GO:0042409|9662519|ISS  product CCoAMT; caffeoyl-CoA O-methyltransferase  note CCoAMT; FUNCTIONS IN: caffeoyl-CoA O-methyltransferase activity; INVOLVED IN: lignin biosynthetic process; LOCATED IN: cytosol; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: O-methyltransferase, family 3 (InterPro:IPR002935); BEST Arabidopsis thaliana protein match is: O-methyltransferase (TAIR:AT1G24735.1); Has 2352 Blast hits to 2350 proteins in 550 species: Archae - 13; Bacteria - 899; Metazoa - 81; Fungi - 22; Plants - 349; Viruses - 0; Other Eukaryotes - 988 (source: NCBI BLink).  protein_id AT1G67980.2p  transcript_id AT1G67980.2  protein_id AT1G67980.2p  transcript_id AT1G67980.2  
At1g67990	chr1:025489494	0.0	W/25489494-25489547,25489650-25489735,25489818-25489962,25490048-25490179,25490465-25490749	AT1G67990.1  CDS  gene_syn ATTSM1, T23K23.16, T23K23_16, TAPETUM-SPECIFIC METHYLTRANSFERASE 1, TSM1  gene TSM1  function Encodes a tapetum-specific O-methyltransferase. In vitro enzyme assay indicated activity with caffeoyl-CoA, caffeoyl glucose, chlorogenic acid and polyamine conjugates. RNAi mutants had impaired silique development and seed setting.  go_component cytosol|GO:0005829|9484457|TAS  go_process seed development|GO:0048316|18557837|IMP  go_process spermidine hydroxycinnamate conjugate biosynthetic process|GO:0080088|19077165|IDA  go_function caffeoyl-CoA O-methyltransferase activity|GO:0042409|18557837|IDA  go_function N1,N5,N10-tris-(5-hydroxyferuloyl)spermidine O-methyltransferase activity|GO:0080012|18557837|IDA  go_function N1,N5,N10-tris-(5-hydroxyferuloyl)spermidine O-methyltransferase activity|GO:0080012|18557837|IMP  go_function caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity|GO:0080076|19077165|IDA  go_function trihydroxyferuloyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity|GO:0080077|19077165|IDA  go_function tricaffeoyl spermidine:S-adenosyl-L-methionine O-methyltransferaseactivity|GO:0080078|19077165|IDA  product TSM1; N1,N5,N10-tris-(5-hydroxyferuloyl)spermidine O-methyltransferase/ caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase/ caffeoyl-CoA O-methyltransferase/ tricaffeoyl spermidine:S-adenosyl-L-methionine O-methyltransferase/ trihydroxyferuloyl spermidine:S-adenosyl-L-methionine O-methyltransferase  note TSM1; FUNCTIONS IN: N1,N5,N10-tris-(5-hydroxyferuloyl)spermidine O-methyltransferase activity, caffeoyl-CoA O-methyltransferase activity, tricaffeoyl spermidine:S-adenosyl-L-methionine O-methyltransferaseactivity, trihydroxyferuloyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity, caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity; INVOLVED IN: spermidine hydroxycinnamate conjugate biosynthetic process, seed development; LOCATED IN: cytosol; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, 4 leaf senescence stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: O-methyltransferase, family 3 (InterPro:IPR002935); BEST Arabidopsis thaliana protein match is: CCoAMT; caffeoyl-CoA O-methyltransferase (TAIR:AT1G67980.1); Has 3266 Blast hits to 3264 proteins in 721 species: Archae - 21; Bacteria - 1390; Metazoa - 132; Fungi - 45; Plants - 437; Viruses - 0; Other Eukaryotes - 1241 (source: NCBI BLink).  protein_id AT1G67990.1p  transcript_id AT1G67990.1  protein_id AT1G67990.1p  transcript_id AT1G67990.1  
At1g68000	chr1:025491346	0.0	W/25491346-25491412,25491495-25491579,25491677-25491726,25491922-25491961,25492052-25492096,25492187-25492252,25492349-25492463,25492545-25492601,25492681-25492779,25492871-25492930	AT1G68000.1  CDS  gene_syn ATPIS, ATPIS1, PHOSPHATIDYLINOSITOL SYNTHASE, PHOSPHATIDYLINOSITOL SYNTHASE 1, T23K23.15, T23K23_15  gene ATPIS1  function phosphatidylinositol synthase 1  go_component membrane|GO:0016020|10809447|IDA  go_process phosphatidylinositol biosynthetic process|GO:0006661|10809447|TAS  go_process phospholipid biosynthetic process|GO:0008654|10411624|IDA  go_function CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity|GO:0003881|10411624|IDA  go_function CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity|GO:0003881|10809447|IGI  product ATPIS1 (PHOSPHATIDYLINOSITOL SYNTHASE 1); CDP-diacylglycerol-inositol 3-phosphatidyltransferase  note PHOSPHATIDYLINOSITOL SYNTHASE 1 (ATPIS1); FUNCTIONS IN: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity; INVOLVED IN: phosphatidylinositol biosynthetic process, phospholipid biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CDP-alcohol phosphatidyltransferase (InterPro:IPR000462), CDP-diacylglycerol-inositol 3-phosphatidyltransferase, eukaryote (InterPro:IPR014387); BEST Arabidopsis thaliana protein match is: PIS2 (PROBABLE CDP-DIACYLGLYCEROL--INOSITOL 3-PHOSPHATIDYLTRANSFERASE 2); phosphotransferase, for other substituted phosphate groups (TAIR:AT4G38570.1); Has 2014 Blast hits to 2014 proteins in 677 species: Archae - 18; Bacteria - 1058; Metazoa - 140; Fungi - 127; Plants - 45; Viruses - 0; Other Eukaryotes - 626 (source: NCBI BLink).  protein_id AT1G68000.1p  transcript_id AT1G68000.1  protein_id AT1G68000.1p  transcript_id AT1G68000.1  
At1g68010	chr1:025493418	0.0	W/25493418-25493540,25493634-25493717,25493798-25493938,25494038-25494159,25494252-25494333,25494423-25494495,25494581-25494672,25494762-25494836,25494908-25495015,25495103-25495180,25495266-25495310,25495395-25495509,25495698-25495720	AT1G68010.1  CDS  gene_syn HPR  gene HPR  function Encodes hydroxypyruvate reductase.  go_component peroxisome|GO:0005777|12154131|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_component peroxisome|GO:0005777|9177031|IDA  go_process photorespiration|GO:0009853|9177031|TAS  go_function poly(U) binding|GO:0008266|17511964|IDA  go_function glycerate dehydrogenase activity|GO:0008465|12154131|NAS  product HPR; glycerate dehydrogenase/ poly(U) binding  note HPR; FUNCTIONS IN: glycerate dehydrogenase activity, poly(U) binding; INVOLVED IN: photorespiration; LOCATED IN: apoplast, chloroplast, peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE); phosphoglycerate dehydrogenase (TAIR:AT1G17745.1); Has 18427 Blast hits to 18426 proteins in 1512 species: Archae - 281; Bacteria - 8815; Metazoa - 656; Fungi - 736; Plants - 302; Viruses - 5; Other Eukaryotes - 7632 (source: NCBI BLink).  protein_id AT1G68010.1p  transcript_id AT1G68010.1  protein_id AT1G68010.1p  transcript_id AT1G68010.1  
At1g68020	chr1:025497493	0.0	W/25497493-25499513,25499591-25499864,25499954-25500241	AT1G68020.2  CDS  gene_syn ATTPS6, T23K23.13, T23K23_13, TPS6, TREHALOSE -6-PHOSPHATASE SYNTHASE S6  gene ATTPS6  function Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain and a trehalose phosphatase (TPP)-like domain. It can complement a yeast mutant lacking both of these activities suggesting that this is a bifunctional enzyme.  go_process trehalose biosynthetic process|GO:0005992|17981987|IGI  go_process trehalose biosynthetic process|GO:0005992||ISS  go_function alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity|GO:0003825|17981987|IGI  go_function trehalose-phosphatase activity|GO:0004805|17981987|IGI  go_function trehalose-phosphatase activity|GO:0004805||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product ATTPS6; alpha,alpha-trehalose-phosphate synthase (UDP-forming)/ transferase, transferring glycosyl groups / trehalose-phosphatase  note ATTPS6; FUNCTIONS IN: transferase activity, transferring glycosyl groups, alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Glycosyl transferase, family 20 (InterPro:IPR001830), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: ATTPS5; protein binding / transferase, transferring glycosyl groups / trehalose-phosphatase (TAIR:AT4G17770.1); Has 2422 Blast hits to 2382 proteins in 629 species: Archae - 31; Bacteria - 1159; Metazoa - 97; Fungi - 469; Plants - 291; Viruses - 0; Other Eukaryotes - 375 (source: NCBI BLink).  protein_id AT1G68020.2p  transcript_id AT1G68020.2  protein_id AT1G68020.2p  transcript_id AT1G68020.2  
At1g68020	chr1:025497493	0.0	W/25497493-25499595	AT1G68020.1  CDS  gene_syn ATTPS6, T23K23.13, T23K23_13, TPS6, TREHALOSE -6-PHOSPHATASE SYNTHASE S6  gene ATTPS6  function Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain and a trehalose phosphatase (TPP)-like domain. It can complement a yeast mutant lacking both of these activities suggesting that this is a bifunctional enzyme.  go_component membrane|GO:0016020||IEA  go_process trehalose biosynthetic process|GO:0005992|17981987|IGI  go_process trehalose biosynthetic process|GO:0005992||ISS  go_function alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity|GO:0003825|17981987|IGI  go_function trehalose-phosphatase activity|GO:0004805|17981987|IGI  go_function trehalose-phosphatase activity|GO:0004805||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product ATTPS6; alpha,alpha-trehalose-phosphate synthase (UDP-forming)/ transferase, transferring glycosyl groups / trehalose-phosphatase  note ATTPS6; FUNCTIONS IN: transferase activity, transferring glycosyl groups, alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Glycosyl transferase, family 20 (InterPro:IPR001830), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: ATTPS5; protein binding / transferase, transferring glycosyl groups / trehalose-phosphatase (TAIR:AT4G17770.1); Has 2123 Blast hits to 2096 proteins in 590 species: Archae - 31; Bacteria - 1011; Metazoa - 97; Fungi - 459; Plants - 193; Viruses - 0; Other Eukaryotes - 332 (source: NCBI BLink).  protein_id AT1G68020.1p  transcript_id AT1G68020.1  protein_id AT1G68020.1p  transcript_id AT1G68020.1  
At1g68030	chr1:025501421	0.0	C/25501421-25501544,25501156-25501349,25500975-25501082,25500378-25500896	AT1G68030.1  CDS  gene_syn T23K23.12, T23K23_12  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product PHD finger protein-related  note PHD finger protein-related; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G14770.2); Has 37 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 11; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G68030.1p  transcript_id AT1G68030.1  protein_id AT1G68030.1p  transcript_id AT1G68030.1  
At1g68040	chr1:025502876	0.0	W/25502876-25502962,25504104-25504760,25504877-25505224	AT1G68040.1  CDS  gene_syn T23K23.11, T23K23_11  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757||ISS  product S-adenosyl-L-methionine:carboxyl methyltransferase family protein  note S-adenosyl-L-methionine:carboxyl methyltransferase family protein; FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: methyltransferase-related (TAIR:AT5G38100.1); Has 622 Blast hits to 614 proteins in 99 species: Archae - 0; Bacteria - 52; Metazoa - 14; Fungi - 3; Plants - 442; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).  protein_id AT1G68040.1p  transcript_id AT1G68040.1  protein_id AT1G68040.1p  transcript_id AT1G68040.1  
At1g68050	chr1:025508737	0.0	W/25508737-25509008,25509110-25510697	AT1G68050.1  CDS  gene_syn ADO3, FKF1, FLAVIN-BINDING, KELCH REPEAT, F BOX 1, T23K23.10, T23K23_10  gene FKF1  function Encodes FKF1, a flavin-binding kelch repeat F box protein, is clock-controlled, regulates transition to flowering. Forms a complex with GI on the CO promoter to regulate CO expression.  go_function two-component sensor activity|GO:0000155||IEA  go_function signal transducer activity|GO:0004871||IEA  go_component cellular_component|GO:0005575|10847687|ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process circadian rhythm|GO:0007623|10847687|IMP  go_process circadian rhythm|GO:0007623|17872410|IDA  go_process circadian rhythm|GO:0007623||ISS  go_process response to blue light|GO:0009637|17872410|IDA  go_process positive regulation of flower development|GO:0009911|10847687|IMP  go_process regulation of transcription|GO:0045449|17872410|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product FKF1 (FLAVIN-BINDING, KELCH REPEAT, F BOX 1); signal transducer/ two-component sensor/ ubiquitin-protein ligase  note FLAVIN-BINDING, KELCH REPEAT, F BOX 1 (FKF1); FUNCTIONS IN: ubiquitin-protein ligase activity, two-component sensor activity, signal transducer activity; INVOLVED IN: positive regulation of flower development, response to blue light, circadian rhythm, regulation of transcription, ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: whole plant, male gametophyte, root tip, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), PAC motif (InterPro:IPR001610), Kelch repeat type 1 (InterPro:IPR006652), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), PAS (InterPro:IPR000014), Kelch repeat type 2 (InterPro:IPR011498), PAS-associated, C-terminal (InterPro:IPR000700), PAS fold-3 (InterPro:IPR013655), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: ZTL (ZEITLUPE); protein binding / ubiquitin-protein ligase (TAIR:AT5G57360.1); Has 5899 Blast hits to 3930 proteins in 528 species: Archae - 53; Bacteria - 1433; Metazoa - 1930; Fungi - 611; Plants - 951; Viruses - 0; Other Eukaryotes - 921 (source: NCBI BLink).  protein_id AT1G68050.1p  transcript_id AT1G68050.1  protein_id AT1G68050.1p  transcript_id AT1G68050.1  
At1g68060	chr1:025513986	0.0	C/25513986-25514226,25513809-25513894,25513573-25513638,25513333-25513503,25513090-25513260,25512824-25512979,25512595-25512741,25512415-25512486,25511792-25512322,25511523-25511710,25511392-25511431	AT1G68060.1  CDS  gene_syn ATMAP70-1, T23K23.9, T23K23_9, microtubule-associated proteins 70-1  gene ATMAP70-1  function Encodes a microtubule associated protein (MAP70-1). Expressed in all tissues.  go_component cortical microtubule, transverse to long axis|GO:0010005|15860013|IDA  go_process cytoskeleton organization|GO:0007010|15860013|TAS  go_function microtubule binding|GO:0008017|15860013|IDA  product ATMAP70-1 (microtubule-associated proteins 70-1); microtubule binding  note microtubule-associated proteins 70-1 (ATMAP70-1); FUNCTIONS IN: microtubule binding; INVOLVED IN: cytoskeleton organization; LOCATED IN: cortical microtubule, transverse to long axis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Myosin II heavy chain-like (InterPro:IPR009768); BEST Arabidopsis thaliana protein match is: ATMAP70-2 (microtubule-associated proteins 70-2); microtubule binding (TAIR:AT1G24764.1); Has 27995 Blast hits to 16660 proteins in 1096 species: Archae - 354; Bacteria - 2278; Metazoa - 16167; Fungi - 2143; Plants - 1182; Viruses - 70; Other Eukaryotes - 5801 (source: NCBI BLink).  protein_id AT1G68060.1p  transcript_id AT1G68060.1  protein_id AT1G68060.1p  transcript_id AT1G68060.1  
At1g68070	chr1:025516307	0.0	C/25516307-25516767,25516105-25516221,25515895-25516027,25515657-25515815,25515412-25515573	AT1G68070.1  CDS  gene_syn T23K23.8, T23K23_8  go_component plasma membrane|GO:0005886|17151019|IDA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: RIE1 (RING-FINGER PROTEIN FOR EMBRYOGENESIS); protein binding / zinc ion binding (TAIR:AT2G01735.1); Has 6861 Blast hits to 6843 proteins in 222 species: Archae - 0; Bacteria - 6; Metazoa - 2342; Fungi - 517; Plants - 2721; Viruses - 49; Other Eukaryotes - 1226 (source: NCBI BLink).  protein_id AT1G68070.1p  transcript_id AT1G68070.1  protein_id AT1G68070.1p  transcript_id AT1G68070.1  
At1g68080	chr1:025517530	0.0	W/25517530-25517592,25517660-25517786,25517881-25517956,25518035-25518107,25518201-25518296,25518368-25518772,25518911-25519240	AT1G68080.1  CDS  gene_syn T23K23.7, T23K23_7  go_process protein metabolic process|GO:0019538||IEA  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||IEA  product iron ion binding / oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors  note iron ion binding / oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, iron ion binding; INVOLVED IN: protein metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620); Has 312 Blast hits to 312 proteins in 35 species: Archae - 0; Bacteria - 4; Metazoa - 193; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT1G68080.1p  transcript_id AT1G68080.1  protein_id AT1G68080.1p  transcript_id AT1G68080.1  
At1g68080	chr1:025517530	0.0	W/25517530-25517592,25517660-25517786,25517881-25517956,25518035-25518107,25518261-25518296,25518368-25518512,25518603-25518772,25518911-25519240	AT1G68080.2  CDS  gene_syn T23K23.7, T23K23_7  go_process protein metabolic process|GO:0019538||IEA  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||IEA  product iron ion binding / oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors  note iron ion binding / oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, iron ion binding; INVOLVED IN: protein metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620); Has 59 Blast hits to 59 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 15; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G68080.2p  transcript_id AT1G68080.2  protein_id AT1G68080.2p  transcript_id AT1G68080.2  
At1g68080	chr1:025517530	0.0	W/25517530-25517592,25517660-25517786,25517881-25517956,25518035-25518107,25518261-25518296,25518368-25518772,25518911-25519240	AT1G68080.3  CDS  gene_syn T23K23.7, T23K23_7  go_process protein metabolic process|GO:0019538||IEA  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||IEA  product iron ion binding / oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors  note iron ion binding / oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, iron ion binding; INVOLVED IN: protein metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620); Has 59 Blast hits to 59 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 15; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G68080.3p  transcript_id AT1G68080.3  protein_id AT1G68080.3p  transcript_id AT1G68080.3  
At1g68080	chr1:025518377	0.0	W/25518377-25518772,25518911-25519240	AT1G68080.4  CDS  gene_syn T23K23.7, T23K23_7  product unknown protein  note unknown protein; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 19 Blast hits to 19 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G68080.4p  transcript_id AT1G68080.4  protein_id AT1G68080.4p  transcript_id AT1G68080.4  
At1g68090	chr1:025520699	0.0	C/25520699-25520774,25520474-25520619,25520175-25520393,25519893-25520108,25519718-25519807,25519442-25519645	AT1G68090.1  CDS  gene_syn ANN5, ANNAT5, ANNEXIN ARABIDOPSIS THALIANA 5, T23K23.6, T23K23_6  gene ANN5  function Encodes a calcium-binding protein annexin (AnnAt5).  go_function calcium ion binding|GO:0005509||IEA  go_function calcium-dependent phospholipid binding|GO:0005544||IEA  go_component cellular_component|GO:0005575||ND  go_function calcium ion binding|GO:0005509||ISS  go_function calcium-dependent phospholipid binding|GO:0005544||ISS  product ANN5; calcium ion binding / calcium-dependent phospholipid binding  note ANN5; FUNCTIONS IN: calcium-dependent phospholipid binding, calcium ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Annexin like protein (InterPro:IPR015472), Annexin repeat (InterPro:IPR018502), Annexin repeat, conserved site (InterPro:IPR018252), Annexin (InterPro:IPR001464); BEST Arabidopsis thaliana protein match is: ANNAT7 (ANNEXIN ARABIDOPSIS 7); calcium ion binding / calcium-dependent phospholipid binding (TAIR:AT5G10230.1); Has 4056 Blast hits to 1841 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 3329; Fungi - 176; Plants - 320; Viruses - 0; Other Eukaryotes - 231 (source: NCBI BLink).  protein_id AT1G68090.1p  transcript_id AT1G68090.1  protein_id AT1G68090.1p  transcript_id AT1G68090.1  
At1g68100	chr1:025521325	0.0	W/25521325-25521640,25521732-25521815,25521957-25522006,25522179-25522230,25522363-25522485,25522574-25522800,25523090-25523236,25523358-25523465,25523554-25523655,25523735-25523779,25523877-25524032	AT1G68100.1  CDS  gene_syn IAA-ALANINE RESISTANCE PROTEIN 1, IAA-ALANINE RESISTANT 1, IAR1, T23K23.5, T23K23_5  gene IAR1  function member of IAA-alanine resistance protein 1  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process metal ion transport|GO:0030001||IEA  go_function metal ion transmembrane transporter activity|GO:0046873||IEA  go_component membrane|GO:0016020||ISS  go_process metal ion transport|GO:0030001||ISS  go_function metal ion transmembrane transporter activity|GO:0046873||ISS  product IAR1 (IAA-ALANINE RESISTANT 1); metal ion transmembrane transporter  note IAA-ALANINE RESISTANT 1 (IAR1); FUNCTIONS IN: metal ion transmembrane transporter activity; INVOLVED IN: metal ion transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease (InterPro:IPR003689); Has 2617 Blast hits to 2074 proteins in 363 species: Archae - 0; Bacteria - 799; Metazoa - 1168; Fungi - 166; Plants - 85; Viruses - 3; Other Eukaryotes - 396 (source: NCBI BLink).  protein_id AT1G68100.1p  transcript_id AT1G68100.1  protein_id AT1G68100.1p  transcript_id AT1G68100.1  
At1g68110	chr1:025524901	0.0	W/25524901-25526040	AT1G68110.1  CDS  gene_syn T23K23.4, T23K23_4  go_component clathrin coat|GO:0030118||IEA  go_process clathrin coat assembly|GO:0048268||IEA  go_function phospholipid binding|GO:0005543||IEA  go_function phosphatidylinositol binding|GO:0005545||IEA  go_function clathrin binding|GO:0030276||IEA  go_function binding|GO:0005488||ISS  product epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related  note epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related; FUNCTIONS IN: phospholipid binding, clathrin binding, binding, phosphatidylinositol binding; INVOLVED IN: clathrin coat assembly; LOCATED IN: clathrin coat; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), Clathrin adaptor, phosphoinositide-binding, GAT-like (InterPro:IPR014712), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (TAIR:AT1G25240.1); Has 192 Blast hits to 186 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 4; Plants - 177; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G68110.1p  transcript_id AT1G68110.1  protein_id AT1G68110.1p  transcript_id AT1G68110.1  
At1g68120	chr1:025526296	0.0	C/25526296-25527108	AT1G68120.1  CDS  gene_syn ATBPC3, BASIC PENTACYSTEINE 3, BBR, BPC3, T23K23.3, T23K23_3  gene BPC3  go_component nucleus|GO:0005634|14731261|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|14731261|IPI  go_function DNA binding|GO:0003677|14731261|IPI  go_function transcription factor activity|GO:0003700|14731261|IPI  product BPC3 (BASIC PENTACYSTEINE 3); DNA binding / transcription factor  note BASIC PENTACYSTEINE 3 (BPC3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: BPC2 (BASIC PENTACYSTEINE 2); DNA binding / transcription factor (TAIR:AT1G14685.3); Has 122 Blast hits to 122 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G68120.1p  transcript_id AT1G68120.1  protein_id AT1G68120.1p  transcript_id AT1G68120.1  
At1g68130	chr1:025532484	0.0	W/25532484-25532634,25532736-25533138,25533612-25534317	AT1G68130.1  CDS  gene_syn Arabidopsis thaliana Indeterminate(ID)-Domain 14, AtIDD14, T23K23.2, T23K23_2  gene AtIDD14  go_component nucleus|GO:0005634|16581911|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product AtIDD14 (Arabidopsis thaliana Indeterminate(ID)-Domain 14); nucleic acid binding / transcription factor/ zinc ion binding  note Arabidopsis thaliana Indeterminate(ID)-Domain 14 (AtIDD14); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: AtIDD16 (Arabidopsis thaliana Indeterminate(ID)-Domain 16); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT1G25250.1); Has 29325 Blast hits to 14409 proteins in 248 species: Archae - 1; Bacteria - 0; Metazoa - 27970; Fungi - 141; Plants - 398; Viruses - 0; Other Eukaryotes - 815 (source: NCBI BLink).  protein_id AT1G68130.1p  transcript_id AT1G68130.1  protein_id AT1G68130.1p  transcript_id AT1G68130.1  
At1g68130	chr1:025532843	0.0	W/25532843-25533138,25533612-25534317	AT1G68130.2  CDS  gene_syn Arabidopsis thaliana Indeterminate(ID)-Domain 14, AtIDD14, T23K23.2, T23K23_2  gene AtIDD14  go_component nucleus|GO:0005634|16581911|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product AtIDD14 (Arabidopsis thaliana Indeterminate(ID)-Domain 14); nucleic acid binding / transcription factor/ zinc ion binding  note Arabidopsis thaliana Indeterminate(ID)-Domain 14 (AtIDD14); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: AtIDD16 (Arabidopsis thaliana Indeterminate(ID)-Domain 16); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT1G25250.1); Has 5042 Blast hits to 3806 proteins in 125 species: Archae - 1; Bacteria - 0; Metazoa - 4473; Fungi - 66; Plants - 385; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT1G68130.2p  transcript_id AT1G68130.2  protein_id AT1G68130.2p  transcript_id AT1G68130.2  
At1g68140	chr1:025539410	0.0	C/25539410-25540414	AT1G68140.1  CDS  gene_syn T23K23.1  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G08460.2); Has 145 Blast hits to 136 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G68140.1p  transcript_id AT1G68140.1  protein_id AT1G68140.1p  transcript_id AT1G68140.1  
At1g68140	chr1:025539697	0.0	C/25539697-25540414,25539410-25539618	AT1G68140.2  CDS  gene_syn T23K23.1  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G08460.2); Has 157 Blast hits to 148 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 4; Plants - 143; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G68140.2p  transcript_id AT1G68140.2  protein_id AT1G68140.2p  transcript_id AT1G68140.2  
At1g68150	chr1:025543970	0.0	W/25543970-25544248,25544327-25544461,25544546-25544830,25544915-25545028,25545304-25545615	AT1G68150.1  CDS  gene_syn AtWRKY9, T22E19.22, T22E19_22, WRKY9  gene WRKY9  function member of WRKY Transcription Factor; Group II-b  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY9; transcription factor  note WRKY9; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY72; transcription factor (TAIR:AT5G15130.1); Has 5599 Blast hits to 3818 proteins in 281 species: Archae - 3; Bacteria - 90; Metazoa - 1781; Fungi - 180; Plants - 2053; Viruses - 41; Other Eukaryotes - 1451 (source: NCBI BLink).  protein_id AT1G68150.1p  transcript_id AT1G68150.1  protein_id AT1G68150.1p  transcript_id AT1G68150.1  
At1g68160	chr1:025548345	0.0	C/25548345-25548625,25548143-25548242,25547695-25547751,25547436-25547553,25546810-25546892,25546669-25546730,25546524-25546593,25546168-25546218	AT1G68160.1  CDS  gene_syn T22E19.21, T22E19_21  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10820.2); Has 90 Blast hits to 90 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 84; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G68160.1p  transcript_id AT1G68160.1  protein_id AT1G68160.1p  transcript_id AT1G68160.1  
At1g68170	chr1:025551925	0.0	W/25551925-25552088,25552161-25552223,25552983-25553099,25553195-25553444,25553549-25553707,25553846-25553997,25554093-25554258	AT1G68170.1  CDS  gene_syn T22E19.23, T22E19_23  go_component membrane|GO:0016020||IEA  product nodulin MtN21 family protein  note nodulin MtN21 family protein; LOCATED IN: membrane; EXPRESSED IN: leaf whorl, embryo, seed; EXPRESSED DURING: C globular stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25270.1); Has 1359 Blast hits to 1346 proteins in 244 species: Archae - 6; Bacteria - 535; Metazoa - 4; Fungi - 0; Plants - 632; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink).  protein_id AT1G68170.1p  transcript_id AT1G68170.1  protein_id AT1G68170.1p  transcript_id AT1G68170.1  
At1g68180	chr1:025554816	0.0	W/25554816-25555562	AT1G68180.1  CDS  gene_syn T22E19.19, T22E19_19  go_component mitochondrion|GO:0005739||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G56580.3); Has 6143 Blast hits to 6124 proteins in 203 species: Archae - 0; Bacteria - 0; Metazoa - 2215; Fungi - 369; Plants - 2526; Viruses - 25; Other Eukaryotes - 1008 (source: NCBI BLink).  protein_id AT1G68180.1p  transcript_id AT1G68180.1  protein_id AT1G68180.1p  transcript_id AT1G68180.1  
At1g68185	chr1:025556542	0.0	W/25556542-25556544,25556659-25556734,25556823-25556881,25557076-25557206,25557343-25557553,25558006-25558173	AT1G68185.1  CDS  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product ubiquitin-related  note ubiquitin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); Has 340 Blast hits to 340 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 146; Fungi - 60; Plants - 82; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT1G68185.1p  transcript_id AT1G68185.1  protein_id AT1G68185.1p  transcript_id AT1G68185.1  
At1g68190	chr1:025559384	0.0	W/25559384-25559791,25560075-25560335,25560412-25560597,25560702-25560898,25560986-25561004	AT1G68190.1  CDS  gene_syn T22E19.18, T22E19_18  go_component intracellular|GO:0005622||IEA  go_component endomembrane system|GO:0012505||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (B-box type) family protein  note zinc finger (B-box type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: zinc finger (B-box type) family protein (TAIR:AT5G48250.1); Has 1069 Blast hits to 869 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1029; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT1G68190.1p  transcript_id AT1G68190.1  protein_id AT1G68190.1p  transcript_id AT1G68190.1  
At1g68200	chr1:025562118	0.0	W/25562118-25562702,25563607-25563948	AT1G68200.1  CDS  gene_syn T22E19.17, T22E19_17  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product zinc finger (CCCH-type) family protein  note zinc finger (CCCH-type) family protein; FUNCTIONS IN: transcription factor activity, nucleic acid binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: inflorescence meristem, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein (TAIR:AT1G66810.1); Has 804 Blast hits to 735 proteins in 134 species: Archae - 0; Bacteria - 0; Metazoa - 376; Fungi - 67; Plants - 140; Viruses - 0; Other Eukaryotes - 221 (source: NCBI BLink).  protein_id AT1G68200.1p  transcript_id AT1G68200.1  protein_id AT1G68200.1p  transcript_id AT1G68200.1  
At1g68200	chr1:025562118	0.0	W/25562118-25562702,25563610-25563948	AT1G68200.2  CDS  gene_syn T22E19.17, T22E19_17  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product zinc finger (CCCH-type) family protein  note zinc finger (CCCH-type) family protein; FUNCTIONS IN: transcription factor activity, nucleic acid binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: inflorescence meristem, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein (TAIR:AT1G66810.1); Has 805 Blast hits to 744 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 368; Fungi - 71; Plants - 141; Viruses - 0; Other Eukaryotes - 225 (source: NCBI BLink).  protein_id AT1G68200.2p  transcript_id AT1G68200.2  protein_id AT1G68200.2p  transcript_id AT1G68200.2  
At1g68210	chr1:025565983	0.0	W/25565983-25566097,25566802-25566951,25567041-25567511,25567597-25567673,25567767-25567965,25568047-25569302	AT1G68210.1  CDS  gene_syn APRR6, PRR6, PSEUDO-RESPONSE REGULATOR 6, T22E19.16, T22E19_16  gene APRR6  function Similar to ARR response regulator proteins that function in two-component signal transduction but lacking a conserved D-D-K motif in the receiver domain  go_process two-component signal transduction system (phosphorelay)|GO:0000160||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_function two-component response regulator activity|GO:0000156||ISS  go_function transcription regulator activity|GO:0030528|12068096|TAS  product APRR6 (PSEUDO-RESPONSE REGULATOR 6); transcription regulator/ two-component response regulator  note PSEUDO-RESPONSE REGULATOR 6 (APRR6); FUNCTIONS IN: transcription regulator activity, two-component response regulator activity; INVOLVED IN: regulation of transcription, DNA-dependent, two-component signal transduction system (phosphorelay), regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Homeodomain-like (InterPro:IPR009057), Signal transduction response regulator, receiver region (InterPro:IPR001789), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14); transcription factor/ two-component response regulator (TAIR:AT2G01760.1); Has 478 Blast hits to 477 proteins in 94 species: Archae - 0; Bacteria - 122; Metazoa - 0; Fungi - 2; Plants - 318; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT1G68210.1p  transcript_id AT1G68210.1  protein_id AT1G68210.1p  transcript_id AT1G68210.1  
At1g68220	chr1:025570322	0.0	W/25570322-25570414,25570496-25570704,25571259-25571562	AT1G68220.1  CDS  gene_syn T22E19.15, T22E19_15  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13380.1); Has 145 Blast hits to 145 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G68220.1p  transcript_id AT1G68220.1  protein_id AT1G68220.1p  transcript_id AT1G68220.1  
At1g68230	chr1:025572185	0.0	W/25572185-25572275,25572355-25572508,25572625-25572754,25572841-25572921	AT1G68230.1  CDS  gene_syn T22E19.14, T22E19_14  go_component endoplasmic reticulum|GO:0005783||IEA  go_component endoplasmic reticulum|GO:0005783||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product reticulon family protein (RTNLB14)  note reticulon family protein (RTNLB14); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: reticulon family protein (RTNLB6) (TAIR:AT3G61560.1); Has 233 Blast hits to 233 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 233; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G68230.1p  transcript_id AT1G68230.1  protein_id AT1G68230.1p  transcript_id AT1G68230.1  
At1g68230	chr1:025572185	0.0	W/25572185-25572275,25572355-25572541,25572625-25572754,25572841-25572921	AT1G68230.2  CDS  gene_syn T22E19.14, T22E19_14  go_component endoplasmic reticulum|GO:0005783||IEA  go_component endoplasmic reticulum|GO:0005783||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product reticulon family protein (RTNLB14)  note reticulon family protein (RTNLB14); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: reticulon family protein (RTNLB5) (TAIR:AT2G46170.1); Has 245 Blast hits to 245 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 243; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G68230.2p  transcript_id AT1G68230.2  protein_id AT1G68230.2p  transcript_id AT1G68230.2  
At1g68238	chr1:025574481	0.0	W/25574481-25574678	AT1G68238.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G68238.1p  transcript_id AT1G68238.1  protein_id AT1G68238.1p  transcript_id AT1G68238.1  
At1g68240	chr1:025575836	0.0	C/25575836-25576066,25575690-25575758,25575527-25575592,25575280-25575438	AT1G68240.2  CDS  gene_syn T22E19.13, T22E19_13  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|12679534|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); Has 590 Blast hits to 590 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 589; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G68240.2p  transcript_id AT1G68240.2  protein_id AT1G68240.2p  transcript_id AT1G68240.2  
At1g68240	chr1:025575836	0.0	C/25575836-25576066,25575690-25575758,25575527-25575592,25575286-25575438,25575179-25575217	AT1G68240.1  CDS  gene_syn T22E19.13, T22E19_13  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|12679534|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); Has 597 Blast hits to 597 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 596; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G68240.1p  transcript_id AT1G68240.1  protein_id AT1G68240.1p  transcript_id AT1G68240.1  
At1g68250	chr1:025579431	0.0	C/25579431-25579832	AT1G68250.1  CDS  gene_syn T22E19.12, T22E19_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon, pollen tube, leaf; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible, LP.08 eight leaves visible; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G68250.1p  transcript_id AT1G68250.1  protein_id AT1G68250.1p  transcript_id AT1G68250.1  
At1g68250	chr1:025579661	0.0	C/25579661-25579832,25579431-25579594	AT1G68250.2  CDS  gene_syn T22E19.12, T22E19_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon, pollen tube, leaf; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible, LP.08 eight leaves visible; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G68250.2p  transcript_id AT1G68250.2  protein_id AT1G68250.2p  transcript_id AT1G68250.2  
At1g68260	chr1:025587456	0.0	C/25587456-25587601,25587203-25587303,25586374-25586483,25586196-25586291,25585976-25586095	AT1G68260.1  CDS  gene_syn T22E19.11, T22E19_11  go_process biological_process|GO:0008150||ND  go_function acyl-CoA thioesterase activity|GO:0016291||ISS  go_function hydrolase activity, acting on ester bonds|GO:0016788||ISS  product thioesterase family protein  note thioesterase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioesterase superfamily (InterPro:IPR006683); BEST Arabidopsis thaliana protein match is: thioesterase-related (TAIR:AT1G68280.1); Has 1295 Blast hits to 1294 proteins in 349 species: Archae - 6; Bacteria - 724; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 523 (source: NCBI BLink).  protein_id AT1G68260.1p  transcript_id AT1G68260.1  protein_id AT1G68260.1p  transcript_id AT1G68260.1  
At1g68270	chr1:025590057	0.0	C/25590057-25590254,25589293-25589875,25589021-25589201,25588191-25588836	AT1G68270.1  CDS  gene_syn T22E19.10, T22E19_10  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  product AMP-dependent synthetase and ligase family protein  note AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AAE12 (ACYL ACTIVATING ENZYME 12); catalytic (TAIR:AT1G65890.1); Has 49430 Blast hits to 44347 proteins in 2109 species: Archae - 616; Bacteria - 27106; Metazoa - 2759; Fungi - 2040; Plants - 1041; Viruses - 1; Other Eukaryotes - 15867 (source: NCBI BLink).  protein_id AT1G68270.1p  transcript_id AT1G68270.1  protein_id AT1G68270.1p  transcript_id AT1G68270.1  
At1g68280	chr1:025593456	0.0	C/25593456-25593595,25593256-25593356,25592874-25592983,25592685-25592780,25592467-25592586	AT1G68280.1  CDS  gene_syn T22E19.9, T22E19_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product thioesterase-related  note thioesterase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Thioesterase superfamily (InterPro:IPR006683); BEST Arabidopsis thaliana protein match is: thioesterase family protein (TAIR:AT1G68260.1); Has 1451 Blast hits to 1450 proteins in 396 species: Archae - 6; Bacteria - 819; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 584 (source: NCBI BLink).  protein_id AT1G68280.1p  transcript_id AT1G68280.1  protein_id AT1G68280.1p  transcript_id AT1G68280.1  
At1g68285	chr1:025594980	0.0	W/25594980-25595507	AT1G68285.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 6.5e-31 P-value blast match to T32E20 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)  
At1g68290	chr1:025596718	0.0	W/25596718-25596840,25596922-25597093,25597187-25597297,25597393-25597448,25597522-25597605,25597678-25597770,25597854-25597918,25598020-25598093,25598170-25598264	AT1G68290.1  CDS  gene_syn ENDO 2, T22E19.8, T22E19_8, endonuclease 2  gene ENDO 2  function Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro.  go_component endomembrane system|GO:0012505||IEA  go_process DNA catabolic process|GO:0006308||IEA  go_process DNA catabolic process|GO:0006308||ISS  go_function single-stranded DNA specific endodeoxyribonuclease activity|GO:0000014|17651368|IDA  go_function nucleic acid binding|GO:0003676||ISS  go_function endonuclease activity|GO:0004519||ISS  go_function T/G mismatch-specific endonuclease activity|GO:0043765|17651368|IDA  product ENDO 2 (endonuclease 2); T/G mismatch-specific endonuclease/ endonuclease/ nucleic acid binding / single-stranded DNA specific endodeoxyribonuclease  note endonuclease 2 (ENDO 2); FUNCTIONS IN: T/G mismatch-specific endonuclease activity, single-stranded DNA specific endodeoxyribonuclease activity, nucleic acid binding, endonuclease activity; INVOLVED IN: DNA catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C/P1 nuclease, core (InterPro:IPR008947), S1/P1 nuclease (InterPro:IPR003154); BEST Arabidopsis thaliana protein match is: ENDO4 (endonuclease 4); T/G mismatch-specific endonuclease/ endonuclease/ nucleic acid binding / single-stranded DNA specific endodeoxyribonuclease (TAIR:AT4G21585.1); Has 590 Blast hits to 587 proteins in 156 species: Archae - 0; Bacteria - 137; Metazoa - 0; Fungi - 68; Plants - 79; Viruses - 2; Other Eukaryotes - 304 (source: NCBI BLink).  protein_id AT1G68290.1p  transcript_id AT1G68290.1  protein_id AT1G68290.1p  transcript_id AT1G68290.1  
At1g68300	chr1:025599069	0.0	C/25599069-25599261,25598876-25598967,25598681-25598799,25598518-25598596	AT1G68300.1  CDS  gene_syn T22E19.7, T22E19_7  go_process response to stress|GO:0006950||IEA  go_component cellular_component|GO:0005575||ND  go_process response to stress|GO:0006950||ISS  go_function molecular_function|GO:0003674||ND  product universal stress protein (USP) family protein  note universal stress protein (USP) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: ethylene-responsive protein, putative (TAIR:AT1G09740.1); Has 4247 Blast hits to 4068 proteins in 895 species: Archae - 347; Bacteria - 3225; Metazoa - 46; Fungi - 59; Plants - 390; Viruses - 0; Other Eukaryotes - 180 (source: NCBI BLink).  protein_id AT1G68300.1p  transcript_id AT1G68300.1  protein_id AT1G68300.1p  transcript_id AT1G68300.1  
At1g68310	chr1:025599812	0.0	W/25599812-25599937,25600374-25600477,25600562-25600661,25600988-25601033,25601142-25601239	AT1G68310.2  CDS  gene_syn T22E19.6, T22E19_6  function Encodes a protein that has been shown to specifically interact with a sequence motif, PIEPPPHH, in the cytoplasmic tail of a membrane protein that directs the protein from the ER to vacuoles where it is internalized.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function vacuolar sorting signal binding|GO:0010209|16227454|IDA  product vacuolar sorting signal binding  note vacuolar sorting signal binding; FUNCTIONS IN: vacuolar sorting signal binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF59 (InterPro:IPR002744); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50845.1).  protein_id AT1G68310.2p  transcript_id AT1G68310.2  protein_id AT1G68310.2p  transcript_id AT1G68310.2  
At1g68310	chr1:025599812	0.0	W/25599812-25599953,25600384-25600477,25600562-25600661,25600988-25601033,25601142-25601239	AT1G68310.1  CDS  gene_syn T22E19.6, T22E19_6  function Encodes a protein that has been shown to specifically interact with a sequence motif, PIEPPPHH, in the cytoplasmic tail of a membrane protein that directs the protein from the ER to vacuoles where it is internalized.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function vacuolar sorting signal binding|GO:0010209|16227454|IDA  product vacuolar sorting signal binding  note vacuolar sorting signal binding; FUNCTIONS IN: vacuolar sorting signal binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF59 (InterPro:IPR002744); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50845.1); Has 411 Blast hits to 411 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 216; Fungi - 85; Plants - 41; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT1G68310.1p  transcript_id AT1G68310.1  protein_id AT1G68310.1p  transcript_id AT1G68310.1  
At1g68320	chr1:025603842	0.0	W/25603842-25603995,25604084-25604213,25604308-25604884	AT1G68320.1  CDS  gene_syn AtMYB62, BW62B, BW62C, MYB62, T22E19.5, T22E19_5, myb domain protein 62  gene MYB62  function putative transcription factor: R2R3-MYB transcription family  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9839469|ISS  product MYB62 (myb domain protein 62); DNA binding / transcription factor  note myb domain protein 62 (MYB62); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, response to salicylic acid stimulus; EXPRESSED IN: male gametophyte, sepal, carpel, stamen, leaf; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB116 (myb domain protein 116); DNA binding / transcription factor (TAIR:AT1G25340.1); Has 6213 Blast hits to 5728 proteins in 348 species: Archae - 0; Bacteria - 0; Metazoa - 632; Fungi - 298; Plants - 3694; Viruses - 3; Other Eukaryotes - 1586 (source: NCBI BLink).  protein_id AT1G68320.1p  transcript_id AT1G68320.1  protein_id AT1G68320.1p  transcript_id AT1G68320.1  
At1g68330	chr1:025611242	0.0	W/25611242-25612048	AT1G68330.1  CDS  gene_syn T22E19.4, T22E19_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48780.1); Has 102 Blast hits to 96 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 3; Plants - 77; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G68330.1p  transcript_id AT1G68330.1  protein_id AT1G68330.1p  transcript_id AT1G68330.1  
At1g68340	chr1:025614679	0.0	C/25614679-25615335,25614517-25614594,25614440-25614445	AT1G68340.1  CDS  gene_syn T22E19.3, T22E19_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, C globular stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25370.1); Has 137 Blast hits to 137 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G68340.1p  transcript_id AT1G68340.1  protein_id AT1G68340.1p  transcript_id AT1G68340.1  
At1g68350	chr1:025616516	0.0	W/25616516-25617004	AT1G68350.1  CDS  gene_syn T22E19.2, T22E19_2  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G68350.1p  transcript_id AT1G68350.1  protein_id AT1G68350.1p  transcript_id AT1G68350.1  
At1g68360	chr1:025621678	0.0	C/25621678-25622412	AT1G68360.1  CDS  gene_syn T22E19.1, T22E19_1  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product zinc finger protein-related  note zinc finger protein-related; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: ZFP6 (ZINC FINGER PROTEIN 6); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT1G67030.1); Has 452 Blast hits to 450 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 440; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G68360.1p  transcript_id AT1G68360.1  protein_id AT1G68360.1p  transcript_id AT1G68360.1  
At1g68370	chr1:025634400	0.0	C/25634400-25634527,25634061-25634184,25633823-25633905,25633631-25633742,25633438-25633542,25633301-25633351,25633014-25633103,25632810-25632918,25632583-25632731,25632446-25632499,25632046-25632273	AT1G68370.1  CDS  gene_syn ALTERED RESPONSE TO GRAVITY 1, ARG1, T22E19.25, T22E19_25  gene ARG1  function DnaJ-like protein with homology to coiled coils found in cytoskeleton-interacting proteins.  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  go_process phototropism|GO:0009638|9927707|IMP  go_process positive gravitropism|GO:0009958|9927707|IMP  go_function cytoskeletal protein binding|GO:0008092|9927707|TAS  product ARG1 (ALTERED RESPONSE TO GRAVITY 1); cytoskeletal protein binding  note ALTERED RESPONSE TO GRAVITY 1 (ARG1); FUNCTIONS IN: cytoskeletal protein binding; INVOLVED IN: protein folding, phototropism, positive gravitropism; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: ARL1 (ARG1-LIKE 1); heat shock protein binding / unfolded protein binding (TAIR:AT1G24120.1); Has 16999 Blast hits to 16997 proteins in 1953 species: Archae - 117; Bacteria - 5352; Metazoa - 3578; Fungi - 1619; Plants - 1347; Viruses - 25; Other Eukaryotes - 4961 (source: NCBI BLink).  protein_id AT1G68370.1p  transcript_id AT1G68370.1  protein_id AT1G68370.1p  transcript_id AT1G68370.1  
At1g68380	chr1:025636854	0.0	C/25636854-25637393,25635933-25636571	AT1G68380.1  CDS  gene_syn T2E12.7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF266, plant (InterPro:IPR004949); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68390.1); Has 325 Blast hits to 325 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 304; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G68380.1p  transcript_id AT1G68380.1  protein_id AT1G68380.1p  transcript_id AT1G68380.1  
At1g68390	chr1:025642838	0.0	W/25642838-25643419,25644840-25645484	AT1G68390.1  CDS  gene_syn T2E12.6, T2E12_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF266, plant (InterPro:IPR004949); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68380.1); Has 359 Blast hits to 359 proteins in 24 species: Archae - 0; Bacteria - 6; Metazoa - 12; Fungi - 0; Plants - 306; Viruses - 9; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G68390.1p  transcript_id AT1G68390.1  protein_id AT1G68390.1p  transcript_id AT1G68390.1  
At1g68400	chr1:025647569	0.0	C/25647569-25648916,25646401-25647065	AT1G68400.1  CDS  gene_syn T2E12.5, T2E12_5  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT2G26730.1); Has 109181 Blast hits to 85983 proteins in 3222 species: Archae - 64; Bacteria - 9468; Metazoa - 37963; Fungi - 6180; Plants - 40805; Viruses - 358; Other Eukaryotes - 14343 (source: NCBI BLink).  protein_id AT1G68400.1p  transcript_id AT1G68400.1  protein_id AT1G68400.1p  transcript_id AT1G68400.1  
At1g68410	chr1:025652031	0.0	C/25652031-25652255,25651673-25651844,25651418-25651571,25651276-25651339,25651099-25651206,25650885-25651010,25650561-25650796,25650262-25650487	AT1G68410.1  CDS  gene_syn T2E12.9, T2E12_9  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C-related / PP2C-related  note protein phosphatase 2C-related / PP2C-related; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C-related / PP2C-related (TAIR:AT1G09160.2); Has 3546 Blast hits to 3545 proteins in 302 species: Archae - 0; Bacteria - 199; Metazoa - 1018; Fungi - 331; Plants - 1165; Viruses - 4; Other Eukaryotes - 829 (source: NCBI BLink).  protein_id AT1G68410.1p  transcript_id AT1G68410.1  protein_id AT1G68410.1p  transcript_id AT1G68410.1  
At1g68410	chr1:025652031	0.0	C/25652031-25652255,25651673-25651844,25651418-25651571,25651276-25651339,25651099-25651206,25650885-25651010,25650561-25650796,25650262-25650487	AT1G68410.2  CDS  gene_syn T2E12.9, T2E12_9  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C-related / PP2C-related  note protein phosphatase 2C-related / PP2C-related; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C-related / PP2C-related (TAIR:AT1G09160.2); Has 3546 Blast hits to 3545 proteins in 302 species: Archae - 0; Bacteria - 199; Metazoa - 1018; Fungi - 331; Plants - 1165; Viruses - 4; Other Eukaryotes - 829 (source: NCBI BLink).  protein_id AT1G68410.2p  transcript_id AT1G68410.2  protein_id AT1G68410.2p  transcript_id AT1G68410.2  
At1g68420	chr1:025653893	0.0	W/25653893-25654156	AT1G68420.1  CDS  gene_syn T2E12.3, T2E12_3  go_component cytoplasm|GO:0005737||IEA  go_process translation|GO:0006412||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function ATP binding|GO:0005524||IEA  product asparaginyl-tRNA synthetase-related  note asparaginyl-tRNA synthetase-related; FUNCTIONS IN: nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (D, K and N) (InterPro:IPR004364), Aminoacyl-tRNA synthetase, class II (D, K and N)-like (InterPro:IPR018150); BEST Arabidopsis thaliana protein match is: SYNC1; ATP binding / aminoacyl-tRNA ligase/ asparagine-tRNA ligase/ aspartate-tRNA ligase/ nucleic acid binding / nucleotide binding (TAIR:AT5G56680.1); Has 2585 Blast hits to 2585 proteins in 973 species: Archae - 148; Bacteria - 1559; Metazoa - 194; Fungi - 167; Plants - 67; Viruses - 0; Other Eukaryotes - 450 (source: NCBI BLink).  protein_id AT1G68420.1p  transcript_id AT1G68420.1  protein_id AT1G68420.1p  transcript_id AT1G68420.1  
At1g68430	chr1:025654989	0.0	C/25654989-25655429	AT1G68430.1  CDS  gene_syn T2E12.2, T2E12_2  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 15 Blast hits to 15 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G68430.1p  transcript_id AT1G68430.1  protein_id AT1G68430.1p  transcript_id AT1G68430.1  
At1g68440	chr1:025658115	0.0	W/25658115-25659035	AT1G68440.1  CDS  gene_syn T2E12.1, T2E12_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25400.1); Has 77 Blast hits to 77 proteins in 26 species: Archae - 0; Bacteria - 6; Metazoa - 26; Fungi - 8; Plants - 17; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT1G68440.1p  transcript_id AT1G68440.1  protein_id AT1G68440.1p  transcript_id AT1G68440.1  
At1g68450	chr1:025661721	0.0	C/25661721-25662179	AT1G68450.1  CDS  gene_syn T2E12.4  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product VQ motif-containing protein  note VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT3G18360.1); Has 59 Blast hits to 59 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G68450.1p  transcript_id AT1G68450.1  protein_id AT1G68450.1p  transcript_id AT1G68450.1  
At1g68460	chr1:025668976	0.0	C/25668976-25670049	AT1G68460.1  CDS  gene_syn ATIPT1, ATP/ADP ISOPENTENYLTRANSFERASE, T26J14.3, T26J14_3, isopentenyltransferase 1  gene ATIPT1  function Encodes a putative adenylate isopentenyltransferase which catalyzes the formation of isopentenyladenosine 5 -monophosphate (iPMP) from AMP and dimethylallylpyrophosphate (DMAPP). Involved in cytokinin biosynthesis.  go_component chloroplast|GO:0009507||IEA  go_process cytokinin biosynthetic process|GO:0009691|11313355|TAS  go_process cytokinin biosynthetic process|GO:0009691|11479373|TAS  go_process cytokinin biosynthetic process|GO:0009691|17062755|IGI  go_process secondary growth|GO:0080117|19074290|IGI  go_function adenylate dimethylallyltransferase activity|GO:0009824|11313355|IDA  go_function adenylate dimethylallyltransferase activity|GO:0009824|11479373|TAS  product ATIPT1 (isopentenyltransferase 1); adenylate dimethylallyltransferase  note isopentenyltransferase 1 (ATIPT1); FUNCTIONS IN: adenylate dimethylallyltransferase activity; INVOLVED IN: cytokinin biosynthetic process, secondary growth; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: tRNA isopentenyltransferase (InterPro:IPR002627); BEST Arabidopsis thaliana protein match is: ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES); adenylate dimethylallyltransferase (TAIR:AT3G19160.1); Has 5002 Blast hits to 4890 proteins in 1429 species: Archae - 0; Bacteria - 2643; Metazoa - 152; Fungi - 99; Plants - 188; Viruses - 0; Other Eukaryotes - 1920 (source: NCBI BLink).  protein_id AT1G68460.1p  transcript_id AT1G68460.1  protein_id AT1G68460.1p  transcript_id AT1G68460.1  
At1g68470	chr1:025677312	0.0	C/25677312-25678267,25676545-25676956	AT1G68470.1  CDS  gene_syn T26J14.4, T26J14_4  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product exostosin family protein  note exostosin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: MUR3 (MURUS 3); catalytic/ transferase, transferring glycosyl groups (TAIR:AT2G20370.1); Has 431 Blast hits to 431 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 410; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G68470.1p  transcript_id AT1G68470.1  protein_id AT1G68470.1p  transcript_id AT1G68470.1  
At1g68480	chr1:025685931	0.0	C/25685931-25685932,25685744-25685838,25685447-25685575,25685128-25685212,25684543-25684993	AT1G68480.1  CDS  gene_syn JAG, JAGGED, T26J14.5, T26J14_5  gene JAG  function Encodes a putative zinc finger transcription factor that is necessary for proper lateral organ shape and is sufficient to induce the proliferation of lateral organ tissue. Together with NUB, it is involved in stamen and carpel development.  go_component nucleus|GO:0005634|14973281|IDA  go_process flower development|GO:0009908|14973281|IMP  go_process leaf morphogenesis|GO:0009965|14973282|IMP  go_process specification of floral organ identity|GO:0010093|14973281|IMP  go_process abaxial cell fate specification|GO:0010158|16192305|IMP  go_process carpel development|GO:0048440|16554365|IGI  go_process stamen development|GO:0048443|16554365|IGI  go_process anther development|GO:0048653|16554365|IGI  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|14973281|ISS  go_function zinc ion binding|GO:0008270||ISS  product JAG (JAGGED); nucleic acid binding / transcription factor/ zinc ion binding  note JAGGED (JAG); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: NUB (NUBBIN); nucleic acid binding / zinc ion binding (TAIR:AT1G13400.1); Has 418 Blast hits to 417 proteins in 62 species: Archae - 0; Bacteria - 6; Metazoa - 59; Fungi - 17; Plants - 323; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G68480.1p  transcript_id AT1G68480.1  protein_id AT1G68480.1p  transcript_id AT1G68480.1  
At1g68490	chr1:025693926	0.0	W/25693926-25694098,25694191-25694254,25694632-25694946	AT1G68490.1  CDS  gene_syn T26J14.6, T26J14_6  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13390.2); Has 59 Blast hits to 59 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G68490.1p  transcript_id AT1G68490.1  protein_id AT1G68490.1p  transcript_id AT1G68490.1  
At1g68500	chr1:025702041	0.0	W/25702041-25702322	AT1G68500.1  CDS  gene_syn T26J14.7, T26J14_7  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25422.1); Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G68500.1p  transcript_id AT1G68500.1  protein_id AT1G68500.1p  transcript_id AT1G68500.1  
At1g68510	chr1:025707033	0.0	W/25707033-25707222,25707493-25708004	AT1G68510.1  CDS  gene_syn LBD42, LOB DOMAIN-CONTAINING PROTEIN 42, T26J14.8, T26J14_8  gene LBD42  go_process biological_process|GO:0008150||ND  product LBD42 (LOB DOMAIN-CONTAINING PROTEIN 42)  note LOB DOMAIN-CONTAINING PROTEIN 42 (LBD42); INVOLVED IN: biological_process unknown; EXPRESSED IN: shoot apex, embryo, seed; EXPRESSED DURING: D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883), Asymmetric leaves, AS2/LOB (InterPro:IPR017414); BEST Arabidopsis thaliana protein match is: LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41) (TAIR:AT3G02550.1); Has 217 Blast hits to 217 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 213; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G68510.1p  transcript_id AT1G68510.1  protein_id AT1G68510.1p  transcript_id AT1G68510.1  
At1g68520	chr1:025709763	0.0	C/25709763-25710749,25709331-25709564	AT1G68520.1  CDS  gene_syn T26J14.9, T26J14_9  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (B-box type) family protein  note zinc finger (B-box type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: zinc finger (B-box type) family protein (TAIR:AT1G25440.1); Has 2123 Blast hits to 1331 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 4; Plants - 2036; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT1G68520.1p  transcript_id AT1G68520.1  protein_id AT1G68520.1p  transcript_id AT1G68520.1  
At1g68526	chr1:025712030	0.0	C/25712030-25712238,25711869-25711950	AT1G68526.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT1G68526.1p  transcript_id AT1G68526.1  protein_id AT1G68526.1p  transcript_id AT1G68526.1  
At1g68530	chr1:025713600	0.0	C/25713600-25714733	AT1G68530.2  CDS  gene_syn 3-KETOACYL-COA SYNTHASE 6, CER6, CUT1, CUTICULAR 1, ECERIFERUM 6, G2, KCS6, POLLEN-PISTIL INCOMPATIBILITY 1, POP1, T26J14.10, T26J14_10  gene KCS6  function Encodes KCS6, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).  go_function catalytic activity|GO:0003824||IEA  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component endoplasmic reticulum|GO:0005783|18465198|IDA  go_process very-long-chain fatty acid metabolic process|GO:0000038|10330468|IDA  go_process response to osmotic stress|GO:0006970|18465198|IEP  go_process response to cold|GO:0009409|18465198|IEP  go_process response to light stimulus|GO:0009416|18465198|IEP  go_process unidimensional cell growth|GO:0009826|17993622|IMP  go_process wax biosynthetic process|GO:0010025|10330468|IMP  go_process cuticle development|GO:0042335|10330468|IDA  product KCS6 (3-KETOACYL-COA SYNTHASE 6); catalytic/ transferase, transferring acyl groups other than amino-acyl groups  note 3-KETOACYL-COA SYNTHASE 6 (KCS6); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity; INVOLVED IN: in 7 processes; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: KCS5 (3-KETOACYL-COA SYNTHASE 5); fatty acid elongase (TAIR:AT1G25450.1); Has 1018 Blast hits to 1017 proteins in 274 species: Archae - 0; Bacteria - 468; Metazoa - 0; Fungi - 0; Plants - 481; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT1G68530.2p  transcript_id AT1G68530.2  protein_id AT1G68530.2p  transcript_id AT1G68530.2  
At1g68530	chr1:025713689	0.0	C/25713689-25714733,25712881-25713329	AT1G68530.1  CDS  gene_syn 3-KETOACYL-COA SYNTHASE 6, CER6, CUT1, CUTICULAR 1, ECERIFERUM 6, G2, KCS6, POLLEN-PISTIL INCOMPATIBILITY 1, POP1, T26J14.10, T26J14_10  gene KCS6  function Encodes KCS6, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).  go_function catalytic activity|GO:0003824||IEA  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component endoplasmic reticulum|GO:0005783|18465198|IDA  go_process very-long-chain fatty acid metabolic process|GO:0000038|10330468|IDA  go_process response to osmotic stress|GO:0006970|18465198|IEP  go_process response to cold|GO:0009409|18465198|IEP  go_process response to light stimulus|GO:0009416|18465198|IEP  go_process unidimensional cell growth|GO:0009826|17993622|IMP  go_process wax biosynthetic process|GO:0010025|10330468|IMP  go_process cuticle development|GO:0042335|10330468|IDA  product KCS6 (3-KETOACYL-COA SYNTHASE 6); catalytic/ transferase, transferring acyl groups other than amino-acyl groups  note 3-KETOACYL-COA SYNTHASE 6 (KCS6); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity; INVOLVED IN: in 7 processes; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: KCS5 (3-KETOACYL-COA SYNTHASE 5); fatty acid elongase (TAIR:AT1G25450.1); Has 3141 Blast hits to 3133 proteins in 752 species: Archae - 0; Bacteria - 902; Metazoa - 0; Fungi - 18; Plants - 2090; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).  protein_id AT1G68530.1p  transcript_id AT1G68530.1  protein_id AT1G68530.1p  transcript_id AT1G68530.1  
At1g68540	chr1:025720066	0.0	W/25720066-25720171,25720258-25720622,25720701-25721053,25721141-25721282	AT1G68540.1  CDS  gene_syn T26J14.11, T26J14_11  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product oxidoreductase family protein  note oxidoreductase family protein; FUNCTIONS IN: coenzyme binding, oxidoreductase activity, binding, catalytic activity; INVOLVED IN: cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: oxidoreductase family protein (TAIR:AT1G25460.1); Has 8163 Blast hits to 8151 proteins in 1249 species: Archae - 145; Bacteria - 3144; Metazoa - 345; Fungi - 584; Plants - 1423; Viruses - 55; Other Eukaryotes - 2467 (source: NCBI BLink).  protein_id AT1G68540.1p  transcript_id AT1G68540.1  protein_id AT1G68540.1p  transcript_id AT1G68540.1  
At1g68550	chr1:025725810	0.0	C/25725810-25726784	AT1G68550.1  CDS  gene_syn T26J14.12, T26J14_12  function encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT3G25890.2); Has 3140 Blast hits to 3135 proteins in 183 species: Archae - 0; Bacteria - 2; Metazoa - 14; Fungi - 1; Plants - 3117; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G68550.1p  transcript_id AT1G68550.1  protein_id AT1G68550.1p  transcript_id AT1G68550.1  
At1g68550	chr1:025725810	0.0	C/25725810-25726784	AT1G68550.2  CDS  gene_syn T26J14.12, T26J14_12  function encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT3G25890.2); Has 3140 Blast hits to 3135 proteins in 183 species: Archae - 0; Bacteria - 2; Metazoa - 14; Fungi - 1; Plants - 3117; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G68550.2p  transcript_id AT1G68550.2  protein_id AT1G68550.2p  transcript_id AT1G68550.2  
At1g68552	chr1:025727048	0.0	C/25727048-25727235,25726880-25726955	AT1G68552.1  CDS  gene_syn CPuORF53, Conserved peptide upstream open reading frame 53  gene CPuORF53  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF53 represents a conserved upstream opening reading frame relative to major ORF AT1G68550.1  go_component chloroplast|GO:0009507||IEA  product CPuORF53 (Conserved peptide upstream open reading frame 53)  note Conserved peptide upstream open reading frame 53 (CPuORF53); LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: CPuORF54 (Conserved peptide upstream open reading frame 54) (TAIR:AT1G25472.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G68552.1p  transcript_id AT1G68552.1  protein_id AT1G68552.1p  transcript_id AT1G68552.1  
At1g68560	chr1:025737680	0.0	C/25737680-25737897,25736926-25737587,25734435-25736302	AT1G68560.1  CDS  gene_syn ALPHA-XYLOSIDASE 1, ATXYL1, F24J5.20, F24J5_20, XYL1  gene XYL1  function Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases.  go_component cell wall|GO:0005618|15593128|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_component apoplast|GO:0048046|15769804|IDA  go_process xylan catabolic process|GO:0045493|15181203|IDA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function xylan 1,4-beta-xylosidase activity|GO:0009044|11402218|IDA  go_function alpha-N-arabinofuranosidase activity|GO:0046556|15181203|IDA  product XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase  note ALPHA-XYLOSIDASE 1 (XYL1); FUNCTIONS IN: xylan 1,4-beta-xylosidase activity, alpha-N-arabinofuranosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: xylan catabolic process; LOCATED IN: apoplast, cell wall, chloroplast, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 31 (InterPro:IPR000322), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: alpha-xylosidase, putative (TAIR:AT3G45940.1); Has 3564 Blast hits to 2864 proteins in 603 species: Archae - 49; Bacteria - 1938; Metazoa - 684; Fungi - 470; Plants - 144; Viruses - 0; Other Eukaryotes - 279 (source: NCBI BLink).  protein_id AT1G68560.1p  transcript_id AT1G68560.1  protein_id AT1G68560.1p  transcript_id AT1G68560.1  
At1g68570	chr1:025746811	0.0	W/25746811-25746913,25747007-25747224,25747366-25747601,25748069-25748392,25749070-25749646,25749778-25750110	AT1G68570.1  CDS  gene_syn F24J5.19, F24J5_19  go_component membrane|GO:0016020||IEA  go_process oligopeptide transport|GO:0006857||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: PTR1 (PEPTIDE TRANSPORTER 1); dipeptide transporter/ transporter/ tripeptide transporter (TAIR:AT3G54140.1); Has 3536 Blast hits to 3259 proteins in 593 species: Archae - 0; Bacteria - 1199; Metazoa - 646; Fungi - 246; Plants - 1123; Viruses - 0; Other Eukaryotes - 322 (source: NCBI BLink).  protein_id AT1G68570.1p  transcript_id AT1G68570.1  protein_id AT1G68570.1p  transcript_id AT1G68570.1  
At1g68568	chr1:025746977	0.0	C/25746977-25747654	AT1G68568.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G68570  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G68568.1  
At1g68580	chr1:025752869	0.0	W/25752869-25753118,25753544-25753626,25753742-25753864,25753967-25754749,25754820-25755039,25755144-25755631	AT1G68580.2  CDS  gene_syn F24J5.18, F24J5_18  go_function DNA binding|GO:0003677||IEA  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein  note agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein; FUNCTIONS IN: RNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Bromo adjacent region (InterPro:IPR001025); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT5G55600.2); Has 145 Blast hits to 125 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 140; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G68580.2p  transcript_id AT1G68580.2  protein_id AT1G68580.2p  transcript_id AT1G68580.2  
At1g68580	chr1:025753582	0.0	W/25753582-25753626,25753742-25753864,25753967-25754749,25754820-25755059	AT1G68580.1  CDS  gene_syn F24J5.18, F24J5_18  go_function DNA binding|GO:0003677||IEA  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein  note agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein; FUNCTIONS IN: RNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Bromo adjacent region (InterPro:IPR001025); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT5G55600.2); Has 114 Blast hits to 103 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G68580.1p  transcript_id AT1G68580.1  protein_id AT1G68580.1p  transcript_id AT1G68580.1  
At1g68585	chr1:025756911	0.0	W/25756911-25757024,25757104-25757185,25757272-25757426	AT1G68585.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G68585.1p  transcript_id AT1G68585.1  protein_id AT1G68585.1p  transcript_id AT1G68585.1  
At1g68590	chr1:025757945	0.0	C/25757945-25758169,25757593-25757859	AT1G68590.2  CDS  gene_syn F24J5.17, F24J5_17  go_component chloroplast|GO:0009507|18431481|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_function structural constituent of ribosome|GO:0003735||ISS  product plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative  note plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein, PSRP-3/Ycf65 (InterPro:IPR006924); BEST Arabidopsis thaliana protein match is: plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative (TAIR:AT5G15760.1); Has 334 Blast hits to 334 proteins in 87 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink).  protein_id AT1G68590.2p  transcript_id AT1G68590.2  protein_id AT1G68590.2p  transcript_id AT1G68590.2  
At1g68590	chr1:025757945	0.0	C/25757945-25758169,25757593-25757868	AT1G68590.1  CDS  gene_syn F24J5.17, F24J5_17  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_function structural constituent of ribosome|GO:0003735||ISS  product plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative  note plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein, PSRP-3/Ycf65 (InterPro:IPR006924); BEST Arabidopsis thaliana protein match is: plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative (TAIR:AT5G15760.1); Has 334 Blast hits to 334 proteins in 87 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink).  protein_id AT1G68590.1p  transcript_id AT1G68590.1  protein_id AT1G68590.1p  transcript_id AT1G68590.1  
At1g68600	chr1:025759947	0.0	W/25759947-25760253,25760754-25760891,25760971-25761240,25761324-25761460,25761546-25761692,25762164-25762778	AT1G68600.1  CDS  gene_syn F24J5.16, F24J5_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0005 (InterPro:IPR006214); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25480.1); Has 529 Blast hits to 527 proteins in 171 species: Archae - 0; Bacteria - 279; Metazoa - 0; Fungi - 30; Plants - 197; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G68600.1p  transcript_id AT1G68600.1  protein_id AT1G68600.1p  transcript_id AT1G68600.1  
At1g68610	chr1:025763623	0.0	W/25763623-25764105	AT1G68610.1  CDS  gene_syn F24J5.15, F24J5_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14870.1); Has 481 Blast hits to 480 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 68; Fungi - 60; Plants - 330; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G68610.1p  transcript_id AT1G68610.1  protein_id AT1G68610.1p  transcript_id AT1G68610.1  
At1g68620	chr1:025766018	0.0	W/25766018-25767028	AT1G68620.1  CDS  gene_syn F24J5.14, F24J5_14  go_process metabolic process|GO:0008152||IEA  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  product hydrolase  note hydrolase; FUNCTIONS IN: hydrolase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDXG, active site (InterPro:IPR002168), Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: AtCXE17 (Arabidopsis thaliana carboxyesterase 17); hydrolase (TAIR:AT5G16080.1); Has 6769 Blast hits to 6757 proteins in 933 species: Archae - 49; Bacteria - 3380; Metazoa - 837; Fungi - 704; Plants - 646; Viruses - 3; Other Eukaryotes - 1150 (source: NCBI BLink).  protein_id AT1G68620.1p  transcript_id AT1G68620.1  protein_id AT1G68620.1p  transcript_id AT1G68620.1  
At1g68630	chr1:025768653	0.0	W/25768653-25768779,25768888-25768959,25769057-25769266,25769382-25769458	AT1G68630.1  CDS  gene_syn F24J5.13, F24J5_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G58320.1); Has 190 Blast hits to 189 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 187; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G68630.1p  transcript_id AT1G68630.1  protein_id AT1G68630.1p  transcript_id AT1G68630.1  
At1g68640	chr1:025772236	0.0	C/25772236-25772303,25772065-25772141,25771919-25771965,25771594-25771821,25771079-25771156,25770933-25770992,25770787-25770864,25770654-25770711,25770299-25770570,25769974-25770219,25769739-25769885	AT1G68640.1  CDS  gene_syn F24J5.12, F24J5_12, PAN, PERIANTHIA  gene PAN  function Encodes bZIP-transcription factor. Mutant plants have extra floral organs.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  product PAN (PERIANTHIA); DNA binding / transcription factor  note PERIANTHIA (PAN); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: AHBP-1B; DNA binding / transcription activator/ transcription factor/ transcription repressor (TAIR:AT5G06950.4); Has 481 Blast hits to 480 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 12; Plants - 424; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT1G68640.1p  transcript_id AT1G68640.1  protein_id AT1G68640.1p  transcript_id AT1G68640.1  
At1g68650	chr1:025775825	0.0	W/25775825-25775842,25775935-25776003,25776316-25776375,25776471-25776518,25776607-25776695,25776789-25776825,25776908-25776952,25777032-25777100,25777174-25777218,25777304-25777365,25777445-25777517,25777612-25777683	AT1G68650.1  CDS  gene_syn F24J5.11, F24J5_11  go_component membrane|GO:0016020||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0016 (InterPro:IPR001727); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25520.1); Has 1272 Blast hits to 1209 proteins in 450 species: Archae - 18; Bacteria - 687; Metazoa - 131; Fungi - 100; Plants - 104; Viruses - 0; Other Eukaryotes - 232 (source: NCBI BLink).  protein_id AT1G68650.1p  transcript_id AT1G68650.1  protein_id AT1G68650.1p  transcript_id AT1G68650.1  
At1g68660	chr1:025779020	0.0	C/25779020-25779083,25778407-25778560,25778058-25778319	AT1G68660.1  CDS  gene_syn F24J5.10, F24J5_10  go_process protein catabolic process|GO:0030163||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein catabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Adaptor protein ClpS, core (InterPro:IPR003769), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719); Has 513 Blast hits to 513 proteins in 129 species: Archae - 0; Bacteria - 273; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink).  protein_id AT1G68660.1p  transcript_id AT1G68660.1  protein_id AT1G68660.1p  transcript_id AT1G68660.1  
At1g68660	chr1:025779020	0.0	C/25779020-25779083,25778407-25778560,25778229-25778319,25778058-25778138	AT1G68660.2  CDS  gene_syn F24J5.10, F24J5_10  go_process protein catabolic process|GO:0030163||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein catabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Adaptor protein ClpS, core (InterPro:IPR003769), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719); Has 79 Blast hits to 79 proteins in 34 species: Archae - 0; Bacteria - 46; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G68660.2p  transcript_id AT1G68660.2  protein_id AT1G68660.2p  transcript_id AT1G68660.2  
At1g68670	chr1:025782344	0.0	W/25782344-25782476,25782565-25782833,25782913-25783228,25783424-25783500,25783604-25783873	AT1G68670.1  CDS  gene_syn F24J5.9, F24J5_9  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677|11118137|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT1G25550.1); Has 881 Blast hits to 879 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 861; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G68670.1p  transcript_id AT1G68670.1  protein_id AT1G68670.1p  transcript_id AT1G68670.1  
At1g68680	chr1:025785627	0.0	W/25785627-25785823,25786592-25786622	AT1G68680.1  CDS  gene_syn F24J5.21, F24J5_21  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; Has 12 Blast hits to 12 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G68680.1p  transcript_id AT1G68680.1  protein_id AT1G68680.1p  transcript_id AT1G68680.1  
At1g68690	chr1:025789192	0.0	W/25789192-25790179,25790259-25790660,25790746-25790829,25790903-25790973,25791065-25791141,25791218-25791365,25791448-25791609,25791692-25791886	AT1G68690.1  CDS  gene_syn F24J5.8, F24J5_8  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  product ATP binding / protein kinase/ protein serine/threonine kinase  note ATP binding / protein kinase/ protein serine/threonine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: PERK10 (PROLINE-RICH EXTENSIN-LIKE RECEPTOR KINASE 10); ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT1G26150.1).  protein_id AT1G68690.1p  transcript_id AT1G68690.1  protein_id AT1G68690.1p  transcript_id AT1G68690.1  
At1g68700	chr1:025792818	0.0	W/25792818-25793123	AT1G68700.1  CDS  gene_syn F24J5.7, F24J5_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: carpel; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26140.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G68700.1p  transcript_id AT1G68700.1  protein_id AT1G68700.1p  transcript_id AT1G68700.1  
At1g68710	chr1:025797571	0.0	C/25797571-25797975,25796113-25797473,25795933-25796043,25795580-25795856,25795400-25795488,25795180-25795288,25794879-25795082,25794672-25794797,25794481-25794579,25794206-25794397,25793498-25794127	AT1G68710.1  CDS  gene_syn F24J5.6, F24J5_6  go_component mitochondrion|GO:0005739||IEA  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process ATP biosynthetic process|GO:0006754||IEA  go_process metabolic process|GO:0008152||IEA  go_process phospholipid transport|GO:0015914||IEA  go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662||ISS  product haloacid dehalogenase-like hydrolase family protein  note haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: metabolic process, phospholipid transport, ATP biosynthetic process; LOCATED IN: mitochondrion, integral to membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, phospholipid-translocating, flippase (InterPro:IPR006539), ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), HAD superfamily hydrolase-like, type 3 (InterPro:IPR013200); BEST Arabidopsis thaliana protein match is: haloacid dehalogenase-like hydrolase family protein (TAIR:AT1G26130.1); Has 8389 Blast hits to 7517 proteins in 1005 species: Archae - 84; Bacteria - 2091; Metazoa - 2665; Fungi - 1387; Plants - 561; Viruses - 3; Other Eukaryotes - 1598 (source: NCBI BLink).  protein_id AT1G68710.1p  transcript_id AT1G68710.1  protein_id AT1G68710.1p  transcript_id AT1G68710.1  
At1g68720	chr1:025804547	0.0	W/25804547-25807992,25808058-25808145,25808353-25808480,25808559-25808820	AT1G68720.1  CDS  gene_syn F24J5.5, F24J5_5, TADA, TRNA ARGININE ADENOSINE DEAMINASE  gene TADA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function catalytic activity|GO:0003824||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function hydrolase activity|GO:0016787||IEA  go_process biological_process|GO:0008150||ND  go_function zinc ion binding|GO:0008270||ISS  go_function hydrolase activity|GO:0016787||ISS  product TADA (TRNA ARGININE ADENOSINE DEAMINASE); catalytic/ hydrolase/ zinc ion binding  note TRNA ARGININE ADENOSINE DEAMINASE (TADA); FUNCTIONS IN: hydrolase activity, zinc ion binding, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193); BEST Arabidopsis thaliana protein match is: cytidine/deoxycytidylate deaminase family protein (TAIR:AT5G28050.1); Has 19163 Blast hits to 15661 proteins in 1596 species: Archae - 115; Bacteria - 4851; Metazoa - 4895; Fungi - 796; Plants - 406; Viruses - 57; Other Eukaryotes - 8043 (source: NCBI BLink).  protein_id AT1G68720.1p  transcript_id AT1G68720.1  protein_id AT1G68720.1p  transcript_id AT1G68720.1  
At1g68725	chr1:025809298	0.0	W/25809298-25809948,25810035-25810130	AT1G68725.1  CDS  gene_syn AGP19, ARABINOGALACTAN PROTEIN 19, ARABINOGALACTAN-PROTEIN 19, ATAGP19, F24J5.4, F24J5_4  gene AGP19  function AGP19 is a lysine-rich arabinogalactan-protein (AGP) and part of a multi-gene family of glycoproteins with approx. 50 members. It falls into one subclass with AGP17 and AGP18, other lysine-rich AGPs. It is expressed in young leaves, shoots, roots and flowers. Non-consensus splice site at the intron:exon boundary (AT:exon)  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product AGP19 (ARABINOGALACTAN-PROTEIN 19)  note ARABINOGALACTAN-PROTEIN 19 (AGP19); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: seedling growth; Has 12068 Blast hits to 10234 proteins in 775 species: Archae - 22; Bacteria - 2796; Metazoa - 4095; Fungi - 1710; Plants - 1559; Viruses - 354; Other Eukaryotes - 1532 (source: NCBI BLink).  protein_id AT1G68725.1p  transcript_id AT1G68725.1  protein_id AT1G68725.1p  transcript_id AT1G68725.1  
At1g68730	chr1:025810977	0.0	C/25810977-25811128,25810739-25810865,25810530-25810658,25810321-25810425	AT1G68730.1  CDS  gene_syn F24J5.3, F24J5_3  go_component chloroplast|GO:0009507||IEA  product zinc finger (DNL type) family protein  note zinc finger (DNL type) family protein; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, Zim17-type (InterPro:IPR007853); BEST Arabidopsis thaliana protein match is: zinc finger (DNL type) family protein (TAIR:AT5G27280.1); Has 260 Blast hits to 260 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 97; Fungi - 70; Plants - 63; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G68730.1p  transcript_id AT1G68730.1  protein_id AT1G68730.1p  transcript_id AT1G68730.1  
At1g68735	chr1:025811903	0.0	W/25811903-25812261	AT1G68735.1  pseudogenic_transcript  pseudo  function Encodes a defensin-like (DEFL) family protein.  
At1g68740	chr1:025816350	0.0	C/25816350-25816574,25815956-25816259,25815315-25815754,25815153-25815224,25814872-25815001,25814448-25814571,25814088-25814337,25813843-25813992,25813570-25813722,25813192-25813470,25812917-25813053,25812735-25812825	AT1G68740.1  CDS  gene_syn F24J5.2, F24J5_2, PHO1;H1  function Encodes PHO1;H1, a member of the PHO1 family. Involved in inorganic phosphate (Pi) transport and homeostasis. Complements pho1 mutation.  go_component integral to membrane|GO:0016021||IEA  go_component integral to membrane|GO:0016021||ISS  go_process phosphate transport|GO:0006817|17461783|IMP  go_process cellular response to phosphate starvation|GO:0016036|17461783|IEP  go_function molecular_function|GO:0003674||ND  product EXS family protein / ERD1/XPR1/SYG1 family protein  note EXS family protein / ERD1/XPR1/SYG1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cellular response to phosphate starvation, phosphate transport; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: EXS, C-terminal (InterPro:IPR004342), SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: PHO1 (phosphate 1) (TAIR:AT3G23430.1); Has 742 Blast hits to 723 proteins in 152 species: Archae - 0; Bacteria - 10; Metazoa - 244; Fungi - 241; Plants - 119; Viruses - 3; Other Eukaryotes - 125 (source: NCBI BLink).  protein_id AT1G68740.1p  transcript_id AT1G68740.1  protein_id AT1G68740.1p  transcript_id AT1G68740.1  
At1g68750	chr1:025827949	0.0	C/25827949-25828104,25827630-25827793,25827404-25827518,25827208-25827285,25827054-25827122,25826896-25826974,25826742-25826818,25826555-25826650,25826185-25826326,25825983-25826078,25825838-25825905,25825496-25825732,25825272-25825397,25825088-25825189,25824866-25825012,25824667-25824765,25824498-25824586,25824251-25824377,25823970-25824176,25822942-25823766	AT1G68750.1  CDS  gene_syn ATPPC4, F14K14.14, F14K14_14  gene ATPPC4  function Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins.  go_component cellular_component|GO:0005575||ND  go_process tricarboxylic acid cycle|GO:0006099|12805623|ISS  go_process tricarboxylic acid cycle|GO:0006099||ISS  go_process response to water deprivation|GO:0009414|16283377|IEP  go_process response to salt stress|GO:0009651|16283377|IEP  go_function phosphoenolpyruvate carboxylase activity|GO:0008964|12805623|ISS  go_function phosphoenolpyruvate carboxylase activity|GO:0008964|17894783|IDA  go_function phosphoenolpyruvate carboxylase activity|GO:0008964||ISS  product ATPPC4; phosphoenolpyruvate carboxylase  note ATPPC4; FUNCTIONS IN: phosphoenolpyruvate carboxylase activity; INVOLVED IN: response to salt stress, response to water deprivation, tricarboxylic acid cycle; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Phosphoenolpyruvate carboxylase, active site (InterPro:IPR018129), Phosphoenolpyruvate carboxylase (InterPro:IPR001449); BEST Arabidopsis thaliana protein match is: ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1); catalytic/ phosphoenolpyruvate carboxylase (TAIR:AT1G53310.3); Has 7375 Blast hits to 5148 proteins in 1289 species: Archae - 18; Bacteria - 3008; Metazoa - 2; Fungi - 0; Plants - 1379; Viruses - 0; Other Eukaryotes - 2968 (source: NCBI BLink).  protein_id AT1G68750.1p  transcript_id AT1G68750.1  protein_id AT1G68750.1p  transcript_id AT1G68750.1  
At1g68760	chr1:025829090	0.0	W/25829090-25829225,25829300-25829607	AT1G68760.1  CDS  gene_syn ARABIDOPSIS THALIANA NUDIX HYDROLASE 1, ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 1, ATNUDT1, ATNUDX1, F14K14.13, F14K14_13  gene ATNUDX1  function Encodes a cytosol localized nudix hydrolase that hydrolizes 8-oxo-dGTP.Involved in suppressing oxidative DNA damage.  go_component cytosol|GO:0005829|15878881|RCA  go_component cytosol|GO:0005829|17804481|IDA  go_process response to DNA damage stimulus|GO:0006974|17804481|IMP  go_function hydrolase activity|GO:0016787||ISS  go_function dihydroneopterin triphosphate pyrophosphohydrolase activity|GO:0019177|15611104|IDA  product ATNUDX1 (ARABIDOPSIS THALIANA NUDIX HYDROLASE 1); dihydroneopterin triphosphate pyrophosphohydrolase/ hydrolase  note ARABIDOPSIS THALIANA NUDIX HYDROLASE 1 (ATNUDX1); FUNCTIONS IN: hydrolase activity, dihydroneopterin triphosphate pyrophosphohydrolase activity; INVOLVED IN: response to DNA damage stimulus; LOCATED IN: cytosol; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), NUDIX hydrolase, core (InterPro:IPR000086); Has 3454 Blast hits to 3454 proteins in 867 species: Archae - 105; Bacteria - 2639; Metazoa - 168; Fungi - 46; Plants - 24; Viruses - 10; Other Eukaryotes - 462 (source: NCBI BLink).  protein_id AT1G68760.1p  transcript_id AT1G68760.1  protein_id AT1G68760.1p  transcript_id AT1G68760.1  
At1g68770	chr1:025829654	0.0	W/25829654-25829725	AT1G68770.1  tRNA  gene_syn 60037.TRNA-PRO-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: AGG)  transcript_id AT1G68770.1  
At1g68765	chr1:025830157	0.0	C/25830157-25830390	AT1G68765.1  CDS  gene_syn IDA, INFLORESCENCE DEFICIENT IN ABSCISSION  gene IDA  function Encodes a small protein of 77 amino acids. Loss of function mutations are defective in the process of ethylene independent floral organ abscission. Although the mutants have a normal appearing abscission zone, the floral organs do not abscisce. The peptide appears to be secreted and may function as a ligand. Arabidopsis 35S:IDA lines constitutively overexpressing IDA exhibit earlier abscission of floral organs, showing that the abscission zones are responsive to IDA soon after the opening of the flowers. In addition, ectopic abscission was observed at the bases of the pedicel, branches of the inflorescence, and cauline leaves. The silique valves also dehisced prematurely.  go_component extracellular region|GO:0005576|12972671|IDA  go_component extracellular region|GO:0005576|12972671|ISS  go_component apoplast|GO:0048046|18660431|TAS  go_process proteolysis|GO:0006508|18660431|IDA  go_process response to ethylene stimulus|GO:0009723|12972671|IMP  go_process abscission|GO:0009838||NAS  go_process floral organ abscission|GO:0010227|12972671|IMP  go_process floral organ abscission|GO:0010227|18660431|IMP  go_function receptor binding|GO:0005102|12972671|TAS  product IDA (INFLORESCENCE DEFICIENT IN ABSCISSION); receptor binding  note INFLORESCENCE DEFICIENT IN ABSCISSION (IDA); FUNCTIONS IN: receptor binding; INVOLVED IN: response to ethylene stimulus, abscission, proteolysis, floral organ abscission; LOCATED IN: extracellular region, apoplast; EXPRESSED IN: stem, flower abscission zone, stamen; EXPRESSED DURING: 4 anthesis; Has 9 Blast hits to 9 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G68765.1p  transcript_id AT1G68765.1  protein_id AT1G68765.1p  transcript_id AT1G68765.1  
At1g68780	chr1:025833114	0.0	C/25833114-25833335,25831881-25832957	AT1G68780.1  CDS  gene_syn F14K14.11, F14K14_11  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT3G25670.1); Has 48682 Blast hits to 17905 proteins in 741 species: Archae - 22; Bacteria - 2819; Metazoa - 13948; Fungi - 544; Plants - 28561; Viruses - 2; Other Eukaryotes - 2786 (source: NCBI BLink).  protein_id AT1G68780.1p  transcript_id AT1G68780.1  protein_id AT1G68780.1p  transcript_id AT1G68780.1  
At1g68790	chr1:025838939	0.0	C/25838939-25839157,25838633-25838842,25838301-25838554,25837936-25838206,25837778-25837861,25835560-25837364,25835266-25835452,25834932-25835159	AT1G68790.1  CDS  gene_syn F14K14.10, F14K14_10, LINC3, LITTLE NUCLEI3  gene LINC3  go_component nucleolus|GO:0005730|15496452|IDA  go_process biological_process|GO:0008150||ND  product LINC3 (LITTLE NUCLEI3)  note LITTLE NUCLEI3 (LINC3); INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: LINC2 (LITTLE NUCLEI2) (TAIR:AT1G13220.2); Has 250284 Blast hits to 107694 proteins in 2507 species: Archae - 2115; Bacteria - 37052; Metazoa - 113182; Fungi - 17848; Plants - 9025; Viruses - 1093; Other Eukaryotes - 69969 (source: NCBI BLink).  protein_id AT1G68790.1p  transcript_id AT1G68790.1  protein_id AT1G68790.1p  transcript_id AT1G68790.1  
At1g68795	chr1:025841079	0.0	C/25841079-25841435	AT1G68795.1  CDS  gene_syn CLAVATA3/ESR-RELATED 12, CLE12  gene CLE12  function Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.  go_component apoplast|GO:0048046|11457943|RCA  go_process signal transduction|GO:0007165||ISS  go_function receptor binding|GO:0005102||ISS  go_function protein binding|GO:0005515|11457943|ISS  product CLE12 (CLAVATA3/ESR-RELATED 12); protein binding / receptor binding  note CLAVATA3/ESR-RELATED 12 (CLE12); FUNCTIONS IN: protein binding, receptor binding; INVOLVED IN: signal transduction; LOCATED IN: apoplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: CLE13 (CLAVATA3/ESR-RELATED 13); protein binding / receptor binding (TAIR:AT1G73965.1); Has 23 Blast hits to 23 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G68795.1p  transcript_id AT1G68795.1  protein_id AT1G68795.1p  transcript_id AT1G68795.1  
At1g68800	chr1:025847505	0.0	C/25847505-25848471,25847306-25847409	AT1G68800.1  CDS  gene_syn BRANCHED 2, BRC2, F14K14.9, F14K14_9, TCP DOMAIN PROTEIN 12, TCP12  gene TCP12  function Encodes a TCP transcription factor, closely related to teosinte branched1, arrests axillary bud development and prevents axillary bud outgrowth. Transcription level and mutant phenotype are weaker than its homolog BRC1 (At3G18550).  go_component nucleus|GO:0005634|17307924|IDA  go_process secondary shoot formation|GO:0010223|17307924|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product TCP12 (TCP DOMAIN PROTEIN 12); transcription factor  note TCP DOMAIN PROTEIN 12 (TCP12); FUNCTIONS IN: transcription factor activity; INVOLVED IN: secondary shoot formation, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: axillary bud, axillary bud meristem; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), CYC/TB1, R domain (InterPro:IPR017888), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP1; DNA binding / transcription factor (TAIR:AT1G67260.2); Has 1431 Blast hits to 1422 proteins in 352 species: Archae - 0; Bacteria - 2; Metazoa - 31; Fungi - 9; Plants - 1296; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT1G68800.1p  transcript_id AT1G68800.1  protein_id AT1G68800.1p  transcript_id AT1G68800.1  
At1g68810	chr1:025861289	0.0	W/25861289-25861903,25862391-25862882	AT1G68810.1  CDS  gene_syn T6L1.1, T6L1_1  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BHLH32 (BASIC HELIX-LOOP-HELIX 32); DNA binding / transcription factor (TAIR:AT3G25710.1); Has 1834 Blast hits to 1834 proteins in 156 species: Archae - 0; Bacteria - 3; Metazoa - 321; Fungi - 31; Plants - 1470; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G68810.1p  transcript_id AT1G68810.1  protein_id AT1G68810.1p  transcript_id AT1G68810.1  
At1g68820	chr1:025865852	0.0	W/25865852-25865988,25866284-25866374,25866459-25866543,25866632-25866701,25866795-25866864,25866962-25867031,25867322-25867367,25867458-25867710,25867792-25868000,25868088-25868162,25868232-25868292,25868370-25868450,25868541-25868620,25868722-25868800	AT1G68820.1  CDS  gene_syn F14K14.7, F14K14_7  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product membrane protein, putative  note membrane protein, putative; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G73950.1); Has 2228 Blast hits to 2189 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 1400; Fungi - 2; Plants - 302; Viruses - 198; Other Eukaryotes - 326 (source: NCBI BLink).  protein_id AT1G68820.1p  transcript_id AT1G68820.1  protein_id AT1G68820.1p  transcript_id AT1G68820.1  
At1g68825	chr1:025869946	0.0	C/25869946-25870086	AT1G68825.1  CDS  gene_syn DEVIL 5, DVL5, ROTUNDIFOLIA LIKE 15, RTFL15  gene RTFL15  go_process shoot development|GO:0048367|14871303|IMP  product RTFL15 (ROTUNDIFOLIA LIKE 15)  note ROTUNDIFOLIA LIKE 15 (RTFL15); INVOLVED IN: shoot development; EXPRESSED IN: stem, flower, root, leaf; CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); BEST Arabidopsis thaliana protein match is: RTFL17 (ROTUNDIFOLIA LIKE 17) (TAIR:AT1G13245.1); Has 60 Blast hits to 60 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G68825.1p  transcript_id AT1G68825.1  protein_id AT1G68825.1p  transcript_id AT1G68825.1  
At1g68825	chr1:025869946	0.0	C/25869946-25870086	AT1G68825.2  CDS  gene_syn DEVIL 5, DVL5, ROTUNDIFOLIA LIKE 15, RTFL15  gene RTFL15  go_process shoot development|GO:0048367|14871303|IMP  product RTFL15 (ROTUNDIFOLIA LIKE 15)  note ROTUNDIFOLIA LIKE 15 (RTFL15); INVOLVED IN: shoot development; EXPRESSED IN: stem, flower, root, leaf; CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); BEST Arabidopsis thaliana protein match is: RTFL17 (ROTUNDIFOLIA LIKE 17) (TAIR:AT1G13245.1).  protein_id AT1G68825.2p  transcript_id AT1G68825.2  protein_id AT1G68825.2p  transcript_id AT1G68825.2  
At1g68830	chr1:025875081	0.0	C/25875081-25875473,25874902-25874988,25874702-25874821,25874523-25874621,25874277-25874445,25874092-25874185,25873875-25873968,25873713-25873769,25872901-25873314,25872654-25872815	AT1G68830.1  CDS  gene_syn STN7, Stt7 homolog STN7, T6L1.2, T6L1_2  gene STN7  function STN7 protein kinase; required for state transitions, phosphorylation of the major antenna complex (LHCII) between PSII and PSI, and light adaptation  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|15729347|IDA  go_process circadian rhythm|GO:0007623|17617174|IEP  go_process regulation of photosynthesis, light reaction|GO:0042548|15729347|IMP  go_function protein kinase activity|GO:0004672|15729347|IDA  go_function kinase activity|GO:0016301||ISS  product STN7 (Stt7 homolog STN7); kinase/ protein kinase  note Stt7 homolog STN7 (STN7); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: regulation of photosynthesis, light reaction, circadian rhythm; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: STN8; kinase/ protein kinase (TAIR:AT5G01920.1); Has 22570 Blast hits to 22424 proteins in 986 species: Archae - 31; Bacteria - 2169; Metazoa - 9853; Fungi - 2516; Plants - 2711; Viruses - 47; Other Eukaryotes - 5243 (source: NCBI BLink).  protein_id AT1G68830.1p  transcript_id AT1G68830.1  protein_id AT1G68830.1p  transcript_id AT1G68830.1  
At1g68840	chr1:025880442	0.0	W/25880442-25881500	AT1G68840.1  CDS  gene_syn RAP2.8, RAV2, REGULATOR OF THE ATPASE OF THE VACUOLAR MEMBRANE, RELATED TO AP2 8, T6L1.3, T6L1_3, TEM2, TEMPRANILLO 2  gene RAV2  function Rav2 is part of a complex that has been named `regulator of the (H+)-ATPase of the vacuolar and endosomal membranes  (RAVE)  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677|9862967|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function transcription repressor activity|GO:0016564|19324928|IDA  product RAV2 (REGULATOR OF THE ATPASE OF THE VACUOLAR MEMBRANE); DNA binding / transcription factor/ transcription repressor  note REGULATOR OF THE ATPASE OF THE VACUOLAR MEMBRANE (RAV2); FUNCTIONS IN: transcription repressor activity, transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Transcriptional factor B3 (InterPro:IPR003340), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: TEM1 (TEMPRANILLO 1); transcription factor (TAIR:AT1G25560.1); Has 4134 Blast hits to 3926 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4113; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G68840.1p  transcript_id AT1G68840.1  protein_id AT1G68840.1p  transcript_id AT1G68840.1  
At1g68845	chr1:025882434	0.0	W/25882434-25882696,25882765-25882918	AT1G68845.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G68845.1p  transcript_id AT1G68845.1  protein_id AT1G68845.1p  transcript_id AT1G68845.1  
At1g68850	chr1:025884953	0.0	C/25884953-25885177,25884660-25884851,25884374-25884539,25883806-25884233	AT1G68850.1  CDS  gene_syn T6L1.4, T6L1_4  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT4G36430.1); Has 2864 Blast hits to 2849 proteins in 205 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 91; Plants - 2736; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT1G68850.1p  transcript_id AT1G68850.1  protein_id AT1G68850.1p  transcript_id AT1G68850.1  
At1g68860	chr1:025886536	0.0	W/25886536-25886609	AT1G68860.1  tRNA  gene_syn 60037.TRNA-ILE-1, 60091.TRNA-ILE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ile (anticodon: AAT)  transcript_id AT1G68860.1  
At1g68862	chr1:025887986	0.0	C/25887986-25888016,25887749-25887804,25886837-25886917	AT1G68862.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G68862.1p  transcript_id AT1G68862.1  protein_id AT1G68862.1p  transcript_id AT1G68862.1  
At1g68870	chr1:025889117	0.0	W/25889117-25889560	AT1G68870.1  CDS  gene_syn F14K14.2, F14K14_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26210.1); Has 6728 Blast hits to 2475 proteins in 215 species: Archae - 2; Bacteria - 2628; Metazoa - 1562; Fungi - 644; Plants - 235; Viruses - 51; Other Eukaryotes - 1606 (source: NCBI BLink).  protein_id AT1G68870.1p  transcript_id AT1G68870.1  protein_id AT1G68870.1p  transcript_id AT1G68870.1  
At1g68872	chr1:025890365	0.0	C/25890365-25891748	AT1G68872.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G68872.1  
At1g68875	chr1:025892113	0.0	W/25892113-25892574	AT1G68875.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, sepal, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G68875.1p  transcript_id AT1G68875.1  protein_id AT1G68875.1p  transcript_id AT1G68875.1  
At1g68880	chr1:025894499	0.0	C/25894499-25894915	AT1G68880.1  CDS  gene_syn Arabidopsis thaliana basic leucine-zipper 8, AtbZIP, T6L1.5  gene AtbZIP  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  product AtbZIP (Arabidopsis thaliana basic leucine-zipper 8); DNA binding / transcription factor  note Arabidopsis thaliana basic leucine-zipper 8 (AtbZIP); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: AtbZIP43 (Arabidopsis thaliana basic leucine-zipper 43); DNA binding / transcription factor (TAIR:AT5G38800.1); Has 961 Blast hits to 961 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 286; Fungi - 21; Plants - 637; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G68880.1p  transcript_id AT1G68880.1  protein_id AT1G68880.1p  transcript_id AT1G68880.1  
At1g68890	chr1:025896988	0.0	W/25896988-25897143,25897220-25897420,25897499-25897716,25897808-25897922,25898026-25898142,25898725-25898826,25899135-25899191,25899327-25899395,25899782-25899886,25899959-25900153,25900275-25900373,25900476-25901039,25901357-25901581,25901723-25902022,25902146-25902213,25902338-25902496,25902754-25902879,25902965-25903096,25903173-25903284,25903443-25903598,25903706-25903945,25904176-25904343,25904456-25904599,25904851-25905312,25905423-25905719,25905793-25905950,25906052-25906159,25906259-25906553	AT1G68890.1  CDS  gene_syn T6L1.7, T6L1_7  function Homologous to the four eubacterial men genes involved in menanoquinone biosynthesis. Studies of mutants defective in this gene demonstrated its involvement in phylloquinone biosynthesis in Arabidopsis.  go_component chloroplast|GO:0009507||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function 2-oxoglutarate decarboxylase activity|GO:0008683||IEA  go_function hydro-lyase activity|GO:0016836||IEA  go_function thiamin pyrophosphate binding|GO:0030976||IEA  go_process phylloquinone biosynthetic process|GO:0042372|16617180|IMP  go_process photosystem I stabilization|GO:0042550|16617180|IMP  product 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding  note 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding; FUNCTIONS IN: hydro-lyase activity, magnesium ion binding, thiamin pyrophosphate binding, 2-oxoglutarate decarboxylase activity; INVOLVED IN: phylloquinone biosynthetic process, photosystem I stabilization; LOCATED IN: chloroplast; EXPRESSED IN: shoot, leaf whorl; CONTAINS InterPro DOMAIN/s: Menaquinone biosynthesis protein (InterPro:IPR004433), O-succinylbenzoic acid (OSB) synthetase, gamma proteobacteria and archaea (InterPro:IPR010196), Alpha/beta hydrolase fold-1 (InterPro:IPR000073), Mandelate racemase/muconate lactonizing enzyme, C-terminal (InterPro:IPR013342), Mandelate racemase/muconate lactonizing enzyme, conserved site (InterPro:IPR018110), Thiamine pyrophosphate enzyme, N-terminal TPP binding region (InterPro:IPR012001); BEST Arabidopsis thaliana protein match is: ICS2 (ISOCHORISMATE SYNTHASE 2); isochorismate synthase (TAIR:AT1G18870.2); Has 14189 Blast hits to 14074 proteins in 1418 species: Archae - 185; Bacteria - 9124; Metazoa - 211; Fungi - 146; Plants - 327; Viruses - 4; Other Eukaryotes - 4192 (source: NCBI BLink).  protein_id AT1G68890.1p  transcript_id AT1G68890.1  protein_id AT1G68890.1p  transcript_id AT1G68890.1  
At1g68905	chr1:025907035	0.0	C/25907035-25907092,25906716-25906945	AT1G68905.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68907.1); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G68905.1p  transcript_id AT1G68905.1  protein_id AT1G68905.1p  transcript_id AT1G68905.1  
At1g68907	chr1:025907834	0.0	C/25907834-25907891,25907508-25907740	AT1G68907.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68905.1); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G68907.1p  transcript_id AT1G68907.1  protein_id AT1G68907.1p  transcript_id AT1G68907.1  
At1g68910	chr1:025910008	0.0	C/25910008-25910485,25908808-25909919,25908565-25908715,25908373-25908380	AT1G68910.2  CDS  gene_syn T6L1.9, T6L1_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11390.1); Has 62064 Blast hits to 33336 proteins in 1535 species: Archae - 767; Bacteria - 6585; Metazoa - 32301; Fungi - 4517; Plants - 2214; Viruses - 301; Other Eukaryotes - 15379 (source: NCBI BLink).  protein_id AT1G68910.2p  transcript_id AT1G68910.2  protein_id AT1G68910.2p  transcript_id AT1G68910.2  
At1g68910	chr1:025910008	0.0	C/25910008-25910485,25908808-25909919,25908569-25908715,25908234-25908380	AT1G68910.1  CDS  gene_syn T6L1.9, T6L1_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11390.1); Has 63759 Blast hits to 34978 proteins in 1593 species: Archae - 767; Bacteria - 7062; Metazoa - 32746; Fungi - 4576; Plants - 2318; Viruses - 316; Other Eukaryotes - 15974 (source: NCBI BLink).  protein_id AT1G68910.1p  transcript_id AT1G68910.1  protein_id AT1G68910.1p  transcript_id AT1G68910.1  
At1g68920	chr1:025915620	0.0	W/25915620-25916348,25916435-25916662,25916751-25916816,25916907-25916975,25917065-25917136,25917211-25917375,25917454-25917547,25917638-25917675	AT1G68920.1  CDS  gene_syn T6L1.10, T6L1_10  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: CIB5 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 5); DNA binding / transcription factor (TAIR:AT1G26260.2); Has 2309 Blast hits to 2165 proteins in 236 species: Archae - 2; Bacteria - 144; Metazoa - 426; Fungi - 94; Plants - 1252; Viruses - 10; Other Eukaryotes - 381 (source: NCBI BLink).  protein_id AT1G68920.1p  transcript_id AT1G68920.1  protein_id AT1G68920.1p  transcript_id AT1G68920.1  
At1g68920	chr1:025915620	0.0	W/25915620-25916348,25916435-25916662,25916751-25916816,25916907-25916975,25917065-25917136,25917211-25917375,25917454-25917547,25917638-25917675	AT1G68920.2  CDS  gene_syn T6L1.10, T6L1_10  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: CIB5 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 5); DNA binding / transcription factor (TAIR:AT1G26260.2); Has 2309 Blast hits to 2165 proteins in 236 species: Archae - 2; Bacteria - 144; Metazoa - 426; Fungi - 94; Plants - 1252; Viruses - 10; Other Eukaryotes - 381 (source: NCBI BLink).  protein_id AT1G68920.2p  transcript_id AT1G68920.2  protein_id AT1G68920.2p  transcript_id AT1G68920.2  
At1g68920	chr1:025915620	0.0	W/25915620-25916348,25916438-25916662,25916751-25916816,25916907-25916975,25917065-25917136,25917211-25917375,25917454-25917547,25917638-25917675	AT1G68920.3  CDS  gene_syn T6L1.10, T6L1_10  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: CIB5 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 5); DNA binding / transcription factor (TAIR:AT1G26260.2); Has 2121 Blast hits to 2011 proteins in 233 species: Archae - 2; Bacteria - 129; Metazoa - 295; Fungi - 107; Plants - 1258; Viruses - 18; Other Eukaryotes - 312 (source: NCBI BLink).  protein_id AT1G68920.3p  transcript_id AT1G68920.3  protein_id AT1G68920.3p  transcript_id AT1G68920.3  
At1g68930	chr1:025918314	0.0	W/25918314-25920545	AT1G68930.1  CDS  gene_syn T6L1.11, T6L1_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, flower; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 16661 Blast hits to 5322 proteins in 173 species: Archae - 2; Bacteria - 7; Metazoa - 105; Fungi - 88; Plants - 16118; Viruses - 0; Other Eukaryotes - 341 (source: NCBI BLink).  protein_id AT1G68930.1p  transcript_id AT1G68930.1  protein_id AT1G68930.1p  transcript_id AT1G68930.1  
At1g68935	chr1:025921751	0.0	W/25921751-25921805,25922423-25922530,25922670-25922698	AT1G68935.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G68935.1p  transcript_id AT1G68935.1  protein_id AT1G68935.1p  transcript_id AT1G68935.1  
At1g68940	chr1:025924172	0.0	C/25924172-25925374,25923721-25924030,25922001-25923589	AT1G68940.1  CDS  gene_syn T6L1.12, T6L1_12  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  product armadillo/beta-catenin repeat protein-related / U-box domain-containing protein  note armadillo/beta-catenin repeat protein-related / U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: SAUL1 (SENESCENCE-ASSOCIATED E3 UBIQUITIN LIGASE 1); ubiquitin-protein ligase (TAIR:AT1G20780.1); Has 1121 Blast hits to 1051 proteins in 119 species: Archae - 0; Bacteria - 80; Metazoa - 94; Fungi - 30; Plants - 791; Viruses - 3; Other Eukaryotes - 123 (source: NCBI BLink).  protein_id AT1G68940.1p  transcript_id AT1G68940.1  protein_id AT1G68940.1p  transcript_id AT1G68940.1  
At1g68940	chr1:025924172	0.0	C/25924172-25925374,25923721-25924030,25922024-25923589,25921453-25921646	AT1G68940.3  CDS  gene_syn T6L1.12, T6L1_12  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  product armadillo/beta-catenin repeat protein-related / U-box domain-containing protein  note armadillo/beta-catenin repeat protein-related / U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), U box (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: SAUL1 (SENESCENCE-ASSOCIATED E3 UBIQUITIN LIGASE 1); ubiquitin-protein ligase (TAIR:AT1G20780.1).  protein_id AT1G68940.3p  transcript_id AT1G68940.3  protein_id AT1G68940.3p  transcript_id AT1G68940.3  
At1g68940	chr1:025924172	0.0	C/25924172-25925374,25923721-25924030,25922111-25923589,25921453-25921568	AT1G68940.2  CDS  gene_syn T6L1.12, T6L1_12  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  product armadillo/beta-catenin repeat protein-related / U-box domain-containing protein  note armadillo/beta-catenin repeat protein-related / U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), U box (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: SAUL1 (SENESCENCE-ASSOCIATED E3 UBIQUITIN LIGASE 1); ubiquitin-protein ligase (TAIR:AT1G20780.1).  protein_id AT1G68940.2p  transcript_id AT1G68940.2  protein_id AT1G68940.2p  transcript_id AT1G68940.2  
At1g68945	chr1:025927168	0.0	W/25927168-25927314	AT1G68945.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G68945.1p  transcript_id AT1G68945.1  protein_id AT1G68945.1p  transcript_id AT1G68945.1  
At1g68950	chr1:025928196	0.0	W/25928196-25928268	AT1G68950.1  tRNA  gene_syn 60091.TRNA-PHE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Phe (anticodon: GAA)  transcript_id AT1G68950.1  
At1g68960	chr1:025929943	0.0	W/25929943-25930712,25930783-25931143	AT1G68960.1  CDS  gene_syn T6L1.14, T6L1_14  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G03390.1); Has 186 Blast hits to 181 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 186; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G68960.1p  transcript_id AT1G68960.1  protein_id AT1G68960.1p  transcript_id AT1G68960.1  
At1g68970	chr1:025932077	0.0	C/25932077-25932149	AT1G68970.1  tRNA  gene_syn 60091.TRNA-PHE-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Phe (anticodon: GAA)  transcript_id AT1G68970.1  
At1g68980	chr1:025933023	0.0	W/25933023-25934882	AT1G68980.1  CDS  gene_syn T6L1.16, T6L1_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G69290.1); Has 6865 Blast hits to 2731 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 40; Plants - 6670; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).  protein_id AT1G68980.1p  transcript_id AT1G68980.1  protein_id AT1G68980.1p  transcript_id AT1G68980.1  
At1g68990	chr1:025939994	0.0	C/25939994-25940755,25939624-25939848,25939375-25939508,25939202-25939268,25939012-25939070,25938737-25938854,25938481-25938594,25938197-25938328,25937699-25938115,25937488-25937538,25937294-25937364,25937119-25937203,25936793-25936945,25936590-25936664,25936393-25936482,25936234-25936281,25935919-25936033,25935727-25935830,25935499-25935609	AT1G68990.1  CDS  gene_syn T6L1.17, T6L1_17  go_process transcription|GO:0006350||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_process transcription|GO:0006350||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product DNA-directed RNA polymerase, mitochondrial (RPOMT)  note DNA-directed RNA polymerase, mitochondrial (RPOMT); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, bacteriophage type (InterPro:IPR002092); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase (RPOT2) (TAIR:AT5G15700.1); Has 1085 Blast hits to 1070 proteins in 245 species: Archae - 0; Bacteria - 22; Metazoa - 122; Fungi - 162; Plants - 128; Viruses - 102; Other Eukaryotes - 549 (source: NCBI BLink).  protein_id AT1G68990.1p  transcript_id AT1G68990.1  protein_id AT1G68990.1p  transcript_id AT1G68990.1  
At1g69000	chr1:025941164	0.0	W/25941164-25941235	AT1G69000.1  tRNA  gene_syn 60091.TRNA-MET-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Met (anticodon: CAT)  transcript_id AT1G69000.1  
At1g69010	chr1:025941804	0.0	W/25941804-25941909,25942080-25942164,25942426-25942495,25942579-25942674,25942811-25943172,25943300-25943429,25943513-25943599	AT1G69010.1  CDS  gene_syn BES1-interacting Myc-like protein 2, BIM2, T6L1.19, T6L1_19  gene BIM2  go_component nucleus|GO:0005634||IEA  go_process dTDP-rhamnose biosynthetic process|GO:0019305||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product BIM2 (BES1-interacting Myc-like protein 2); DNA binding / transcription factor  note BES1-interacting Myc-like protein 2 (BIM2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: dTDP-rhamnose biosynthetic process, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BIM1; DNA binding / protein binding / transcription factor (TAIR:AT5G08130.3); Has 1614 Blast hits to 1609 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 201; Fungi - 38; Plants - 1371; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G69010.1p  transcript_id AT1G69010.1  protein_id AT1G69010.1p  transcript_id AT1G69010.1  
At1g69020	chr1:025946842	0.0	C/25946842-25947197,25946603-25946751,25946439-25946513,25946291-25946342,25946055-25946199,25945620-25945961,25945412-25945531,25944859-25945283,25944526-25944742,25944244-25944437,25943949-25944147	AT1G69020.1  CDS  gene_syn T6L1.20, T6L1_20  go_component chloroplast|GO:0009507|18431481|IDA  go_process proteolysis|GO:0006508||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function serine-type peptidase activity|GO:0008236||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type peptidase activity|GO:0008236||ISS  product prolyl oligopeptidase family protein  note prolyl oligopeptidase family protein; FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase active site region (InterPro:IPR001375), Peptidase S9A, oligopeptidase, N-terminal beta-propeller (InterPro:IPR004106), Peptidase S9A, prolyl oligopeptidase (InterPro:IPR002470); BEST Arabidopsis thaliana protein match is: prolyl oligopeptidase family protein (TAIR:AT5G66960.1); Has 5305 Blast hits to 5222 proteins in 673 species: Archae - 36; Bacteria - 1637; Metazoa - 244; Fungi - 18; Plants - 94; Viruses - 0; Other Eukaryotes - 3276 (source: NCBI BLink).  protein_id AT1G69020.1p  transcript_id AT1G69020.1  protein_id AT1G69020.1p  transcript_id AT1G69020.1  
At1g69030	chr1:025948806	0.0	C/25948806-25949262,25948616-25948722,25948387-25948484,25947717-25947901,25947566-25947630,25947429-25947470	AT1G69030.1  CDS  gene_syn T6L1.21, T6L1_21  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT1G26300.1); Has 173 Blast hits to 173 proteins in 34 species: Archae - 4; Bacteria - 4; Metazoa - 52; Fungi - 10; Plants - 92; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G69030.1p  transcript_id AT1G69030.1  protein_id AT1G69030.1p  transcript_id AT1G69030.1  
At1g69040	chr1:025957843	0.0	W/25957843-25957846,25958188-25958260,25958357-25958402,25958500-25958614,25958707-25958774,25958857-25959459,25959540-25959644,25959726-25960079	AT1G69040.2  CDS  gene_syn ACR4, ACT REPEAT 4, F4N2.2, F4N2_2  gene ACR4  function ACT-domain containing protein involved in feedback regulation of amino acid metabolism  go_function amino acid binding|GO:0016597||IEA  go_component cytosol|GO:0005829|12481063|ISS  go_process regulation of amino acid metabolic process|GO:0006521|12481063|ISS  go_process response to cytokinin stimulus|GO:0009735|12481063|IEP  product ACR4 (ACT REPEAT 4); amino acid binding  note ACT REPEAT 4 (ACR4); FUNCTIONS IN: amino acid binding; INVOLVED IN: regulation of amino acid metabolic process, response to cytokinin stimulus; LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: ACR5; amino acid binding (TAIR:AT2G03730.2); Has 1652 Blast hits to 1036 proteins in 260 species: Archae - 0; Bacteria - 854; Metazoa - 0; Fungi - 0; Plants - 321; Viruses - 0; Other Eukaryotes - 477 (source: NCBI BLink).  protein_id AT1G69040.2p  transcript_id AT1G69040.2  protein_id AT1G69040.2p  transcript_id AT1G69040.2  
At1g69040	chr1:025958196	0.0	W/25958196-25958260,25958357-25958402,25958500-25958614,25958707-25958774,25958857-25959459,25959540-25959644,25959726-25960079	AT1G69040.1  CDS  gene_syn ACR4, ACT REPEAT 4, F4N2.2, F4N2_2  gene ACR4  function ACT-domain containing protein involved in feedback regulation of amino acid metabolism  go_function amino acid binding|GO:0016597||IEA  go_component cytosol|GO:0005829|12481063|ISS  go_process regulation of amino acid metabolic process|GO:0006521|12481063|ISS  go_process response to cytokinin stimulus|GO:0009735|12481063|IEP  product ACR4 (ACT REPEAT 4); amino acid binding  note ACT REPEAT 4 (ACR4); FUNCTIONS IN: amino acid binding; INVOLVED IN: regulation of amino acid metabolic process, response to cytokinin stimulus; LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: ACR5; amino acid binding (TAIR:AT2G03730.2); Has 1655 Blast hits to 1036 proteins in 260 species: Archae - 0; Bacteria - 852; Metazoa - 0; Fungi - 0; Plants - 326; Viruses - 0; Other Eukaryotes - 477 (source: NCBI BLink).  protein_id AT1G69040.1p  transcript_id AT1G69040.1  protein_id AT1G69040.1p  transcript_id AT1G69040.1  
At1g69050	chr1:025961975	0.0	W/25961975-25962259	AT1G69050.1  CDS  gene_syn F4N2.3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G69050.1p  transcript_id AT1G69050.1  protein_id AT1G69050.1p  transcript_id AT1G69050.1  
At1g69060	chr1:025965055	0.0	W/25965055-25966536,25966694-25966807,25966894-25967043,25967127-25967273	AT1G69060.1  CDS  go_component plasma membrane|GO:0005886|17151019|IDA  go_function heat shock protein binding|GO:0031072||IEA  go_process biological_process|GO:0008150||ND  product heat shock protein binding  note heat shock protein binding; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); Has 3578 Blast hits to 2375 proteins in 246 species: Archae - 2; Bacteria - 200; Metazoa - 1252; Fungi - 309; Plants - 113; Viruses - 2; Other Eukaryotes - 1700 (source: NCBI BLink).  protein_id AT1G69060.1p  transcript_id AT1G69060.1  protein_id AT1G69060.1p  transcript_id AT1G69060.1  
At1g69070	chr1:025971045	0.0	C/25971045-25971389,25970805-25970967,25970662-25970714,25970510-25970569,25970299-25970421,25970045-25970173,25969228-25969887,25968925-25969117,25968635-25968828,25968450-25968545,25968162-25968301,25967792-25968070,25967421-25967691	AT1G69070.1  CDS  gene_syn F4N2.4, F4N2_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nop14-like protein (InterPro:IPR007276); Has 64668 Blast hits to 30830 proteins in 1152 species: Archae - 207; Bacteria - 18692; Metazoa - 20758; Fungi - 6782; Plants - 2177; Viruses - 523; Other Eukaryotes - 15529 (source: NCBI BLink).  protein_id AT1G69070.1p  transcript_id AT1G69070.1  protein_id AT1G69070.1p  transcript_id AT1G69070.1  
At1g69080	chr1:025972982	0.0	C/25972982-25973243,25972778-25972893,25972132-25972425	AT1G69080.1  CDS  gene_syn F4N2.5, F4N2_5  go_process response to stress|GO:0006950||IEA  go_function molecular_function|GO:0003674||ND  product universal stress protein (USP) family protein  note universal stress protein (USP) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729); BEST Arabidopsis thaliana protein match is: MRH6 (morphogenesis of root hair 6) (TAIR:AT2G03720.1); Has 94 Blast hits to 94 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G69080.1p  transcript_id AT1G69080.1  protein_id AT1G69080.1p  transcript_id AT1G69080.1  
At1g69080	chr1:025972982	0.0	C/25972982-25973243,25972820-25972893,25972132-25972425	AT1G69080.2  CDS  gene_syn F4N2.5, F4N2_5  go_process response to stress|GO:0006950||IEA  go_function molecular_function|GO:0003674||ND  product universal stress protein (USP) family protein  note universal stress protein (USP) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729); BEST Arabidopsis thaliana protein match is: MRH6 (morphogenesis of root hair 6) (TAIR:AT2G03720.1); Has 85 Blast hits to 85 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G69080.2p  transcript_id AT1G69080.2  protein_id AT1G69080.2p  transcript_id AT1G69080.2  
At1g69090	chr1:025977501	0.0	C/25977501-25978706	AT1G69090.1  CDS  gene_syn F4N2.7, F4N2_7  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G66830.1); Has 178 Blast hits to 167 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 178; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G69090.1p  transcript_id AT1G69090.1  protein_id AT1G69090.1p  transcript_id AT1G69090.1  
At1g69100	chr1:025979999	0.0	W/25979999-25980302,25980386-25980885,25980973-25981101,25981187-25981263,25981343-25981436	AT1G69100.1  CDS  gene_syn F4N2.8, F4N2_8  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartic-type endopeptidase  note aspartic-type endopeptidase; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT4G22050.1); Has 3491 Blast hits to 3370 proteins in 329 species: Archae - 0; Bacteria - 4; Metazoa - 1696; Fungi - 1034; Plants - 287; Viruses - 0; Other Eukaryotes - 470 (source: NCBI BLink).  protein_id AT1G69100.1p  transcript_id AT1G69100.1  protein_id AT1G69100.1p  transcript_id AT1G69100.1  
At1g69110	chr1:025981798	0.0	C/25981798-25982056	AT1G69110.1  pseudogenic_transcript  pseudo  gene_syn F4N2.26  note pseudogene, 40S ribosomal protein S20  
At1g69120	chr1:025985918	0.0	C/25985918-25986102,25984497-25984575,25984332-25984396,25984139-25984238,25983866-25983907,25983738-25983779,25983104-25983258,25982576-25982678	AT1G69120.1  CDS  gene_syn AGAMOUS-LIKE 7, AGL7, AP1, APETALA1, F4N2.9, F4N2_9, FLORAL HOMEOTIC PROTEIN APETALA1  gene AP1  function Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies floral meristem and sepal identity. Required for the transcriptional activation of AGAMOUS. Interacts with LEAFY.Binds to promoter and regulates the expression of flowering time genes SVP, SOC1 and AGL24.  go_component nucleus|GO:0005634|10948247|IDA  go_process flower development|GO:0009908|11439126|IMP  go_process meristem structural organization|GO:0009933|10368173|IMP  go_process maintenance of floral meristem identity|GO:0010076|18694458|IGI  go_process positive regulation of transcription|GO:0045941|11283333|IGI  go_function DNA binding|GO:0003677|17428825|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function protein binding|GO:0005515|16854969|IPI  go_function transcription activator activity|GO:0016563|11206550|IEP  go_function protein heterodimerization activity|GO:0046982|16679456|IPI  product AP1 (APETALA1); DNA binding / protein binding / protein heterodimerization/ transcription activator/ transcription factor  note APETALA1 (AP1); FUNCTIONS IN: protein binding, transcription factor activity, protein heterodimerization activity, transcription activator activity, DNA binding; INVOLVED IN: flower development, meristem structural organization, maintenance of floral meristem identity, positive regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: CAL (CAULIFLOWER); DNA binding / transcription factor (TAIR:AT1G26310.1); Has 5933 Blast hits to 5912 proteins in 735 species: Archae - 10; Bacteria - 34; Metazoa - 706; Fungi - 231; Plants - 4741; Viruses - 2; Other Eukaryotes - 209 (source: NCBI BLink).  protein_id AT1G69120.1p  transcript_id AT1G69120.1  protein_id AT1G69120.1p  transcript_id AT1G69120.1  
At1g69130	chr1:025989730	0.0	W/25989730-25989803	AT1G69130.1  tRNA  gene_syn 60126.TRNA-ILE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ile (anticodon: AAT)  transcript_id AT1G69130.1  
At1g69140	chr1:025991520	0.0	C/25991520-25991872	AT1G69140.1  pseudogenic_transcript  pseudo  gene_syn F4N2.10  note pseudogene, hypothetical protein  
At1g69150	chr1:025993659	0.0	C/25993659-25995212	AT1G69150.1  CDS  gene_syn F4N2.11, F4N2_11  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT3G43890.1); Has 1384 Blast hits to 495 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1365; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT1G69150.1p  transcript_id AT1G69150.1  protein_id AT1G69150.1p  transcript_id AT1G69150.1  
At1g69160	chr1:026000315	0.0	W/26000315-26001280	AT1G69160.1  CDS  gene_syn F4N2.12, F4N2_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; Has 116 Blast hits to 115 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 24; Plants - 39; Viruses - 2; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT1G69160.1p  transcript_id AT1G69160.1  protein_id AT1G69160.1p  transcript_id AT1G69160.1  
At1g69170	chr1:026005626	0.0	W/26005626-26006134,26006238-26006374,26006470-26007041	AT1G69170.1  CDS  gene_syn F4N2.13, F4N2_13  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product squamosa promoter-binding protein-like 6 (SPL6)  note squamosa promoter-binding protein-like 6 (SPL6); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: SPL2 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2); DNA binding / transcription factor (TAIR:AT5G43270.3); Has 527 Blast hits to 527 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 525; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G69170.1p  transcript_id AT1G69170.1  protein_id AT1G69170.1p  transcript_id AT1G69170.1  
At1g69180	chr1:026008839	0.0	C/26008839-26008940,26008541-26008660,26008339-26008447,26008190-26008238,26007999-26008074,26007840-26007902,26007734-26007760	AT1G69180.1  CDS  gene_syn CRABS CLAW, CRC, F4N2.14, F4N2_14, TRANSCRIPTION FACTOR CRC  gene CRC  function Putative transcription factor with zinc finger and helix-loop-helix domains, the later similar to HMG boxes. Involved in specifying abaxial cell fate in the carpel. Four putative LFY binding sites (CCANTG) and two potential binding sites for MADS box proteins known as CArG boxes (CC(A/T)6GG) were found in the region spanning 3.8 Kb upstream of the CRC coding region.  go_component cellular_component|GO:0005575||ND  go_process polarity specification of adaxial/abaxial axis|GO:0009944|15598802|TAS  go_process nectary development|GO:0010254|10225998|IMP  go_process floral meristem determinacy|GO:0010582|18441215|IGI  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process carpel development|GO:0048440|10225998|IMP  go_process style development|GO:0048479|18441215|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||TAS  product CRC (CRABS CLAW); transcription factor  note CRABS CLAW (CRC); FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: YAB5 (YABBY5); transcription factor (TAIR:AT2G26580.2); Has 332 Blast hits to 330 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 322; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G69180.1p  transcript_id AT1G69180.1  protein_id AT1G69180.1p  transcript_id AT1G69180.1  
At1g69190	chr1:026014706	0.0	C/26014706-26014709,26013131-26014581	AT1G69190.1  CDS  gene_syn F4N2.15  function encodes a bifunctional cytosolic hydroxymethyldihydropterin pyrophosphokinase/ dihydropteroate synthase (HPPK/DHPS)that is involved in tetrahydrofolate biosynthesis and is responsive to oxidative stress.  go_component cytosol|GO:0005829|17289662|IDA  go_process response to oxidative stress|GO:0006979|17289662|IMP  go_process folic acid and derivative biosynthetic process|GO:0009396||ISS  go_process flower development|GO:0009908|17289662|IEP  go_process tetrahydrofolate biosynthetic process|GO:0046654|17289662|IDA  go_function 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity|GO:0003848|17289662|IDA  go_function dihydropteroate synthase activity|GO:0004156|17289662|IDA  go_function dihydropteroate synthase activity|GO:0004156||ISS  product 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase/ dihydropteroate synthase  note 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase/ dihydropteroate synthase; FUNCTIONS IN: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity, dihydropteroate synthase activity; INVOLVED IN: flower development, response to oxidative stress, tetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process; LOCATED IN: cytosol; CONTAINS InterPro DOMAIN/s: Dihydropteroate synthase-like (InterPro:IPR011005), 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK (InterPro:IPR000550), Dihydropteroate synthase (InterPro:IPR006390), Dihydropteroate synthase, DHPS (InterPro:IPR000489); BEST Arabidopsis thaliana protein match is: dihydropterin pyrophosphokinase, putative / dihydropteroate synthase, putative / DHPS, putative (TAIR:AT4G30000.1); Has 10409 Blast hits to 10389 proteins in 1414 species: Archae - 102; Bacteria - 5367; Metazoa - 10; Fungi - 111; Plants - 33; Viruses - 0; Other Eukaryotes - 4786 (source: NCBI BLink).  protein_id AT1G69190.1p  transcript_id AT1G69190.1  protein_id AT1G69190.1p  transcript_id AT1G69190.1  
At1g69200	chr1:026016018	0.0	W/26016018-26016064,26016313-26016647,26016730-26017382,26017463-26017934,26018022-26018365	AT1G69200.1  CDS  gene_syn F4N2.16, F4N2_16  go_component nucleoid|GO:0009295|16326926|IDA  go_process sucrose biosynthetic process|GO:0005986||IEA  go_process sucrose catabolic process, using beta-fructofuranosidase|GO:0019575||IEA  go_process acetate fermentation|GO:0019654||IEA  go_function kinase activity|GO:0016301||ISS  product kinase  note kinase; FUNCTIONS IN: kinase activity; INVOLVED IN: acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase; LOCATED IN: nucleoid; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611); BEST Arabidopsis thaliana protein match is: pfkB-type carbohydrate kinase family protein (TAIR:AT3G54090.1); Has 2570 Blast hits to 2568 proteins in 702 species: Archae - 64; Bacteria - 1704; Metazoa - 58; Fungi - 24; Plants - 169; Viruses - 0; Other Eukaryotes - 551 (source: NCBI BLink).  protein_id AT1G69200.1p  transcript_id AT1G69200.1  protein_id AT1G69200.1p  transcript_id AT1G69200.1  
At1g69210	chr1:026019797	0.0	C/26019797-26020058,26019443-26019513,26019180-26019355,26018883-26019081	AT1G69210.2  CDS  gene_syn F4N2.17, F4N2_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0090 (InterPro:IPR003728); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77122.1); Has 31 Blast hits to 31 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G69210.2p  transcript_id AT1G69210.2  protein_id AT1G69210.2p  transcript_id AT1G69210.2  
At1g69210	chr1:026019797	0.0	C/26019797-26020058,26019443-26019513,26019180-26019355,26018973-26019081,26018583-26018882	AT1G69210.1  CDS  gene_syn F4N2.17, F4N2_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0090 (InterPro:IPR003728); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77122.1); Has 93 Blast hits to 93 proteins in 33 species: Archae - 0; Bacteria - 52; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G69210.1p  transcript_id AT1G69210.1  protein_id AT1G69210.1p  transcript_id AT1G69210.1  
At1g69220	chr1:026025354	0.0	C/26025354-26026119,26025108-26025196,26024916-26025023,26024675-26024782,26024419-26024509,26024171-26024223,26023978-26024040,26023796-26023840,26023495-26023530,26022874-26022929,26022451-26022532,26022084-26022212,26021835-26021973,26021340-26021490,26020950-26021154,26020666-26020869,26020485-26020570,26020298-26020397	AT1G69220.1  CDS  gene_syn F4N2.24, SERINE/THREONINE KINASE SIK1, SIK1  gene SIK1  function Encodes a putative serine/threonine kinase (SIK1).  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component chromosome, centromeric region|GO:0000775|15469496|IDA  go_component nucleus|GO:0005634|15469496|IDA  go_component chromosome|GO:0005694|15469496|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function kinase activity|GO:0016301||ISS  product SIK1; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chromosome, centromeric region, mitochondrion, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATMAP4K ALPHA1; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT1G53165.2); Has 101472 Blast hits to 98460 proteins in 3417 species: Archae - 79; Bacteria - 9755; Metazoa - 44198; Fungi - 9003; Plants - 19273; Viruses - 526; Other Eukaryotes - 18638 (source: NCBI BLink).  protein_id AT1G69220.1p  transcript_id AT1G69220.1  protein_id AT1G69220.1p  transcript_id AT1G69220.1  
At1g69220	chr1:026025435	0.0	C/26025435-26026119,26025108-26025196,26024916-26025023,26024675-26024782,26024419-26024509,26024171-26024223,26023978-26024040,26023796-26023840,26023495-26023530,26022874-26022929,26022451-26022532,26022084-26022212,26021835-26021973,26021340-26021490,26020950-26021154,26020666-26020869,26020485-26020570,26020298-26020397	AT1G69220.2  CDS  gene_syn F4N2.24, SERINE/THREONINE KINASE SIK1, SIK1  gene SIK1  function Encodes a putative serine/threonine kinase (SIK1).  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component chromosome, centromeric region|GO:0000775|15469496|IDA  go_component nucleus|GO:0005634|15469496|IDA  go_component chromosome|GO:0005694|15469496|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function kinase activity|GO:0016301||ISS  product SIK1; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chromosome, centromeric region, mitochondrion, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT3G15220.1); Has 99279 Blast hits to 96058 proteins in 3362 species: Archae - 71; Bacteria - 10260; Metazoa - 42951; Fungi - 8567; Plants - 18903; Viruses - 516; Other Eukaryotes - 18011 (source: NCBI BLink).  protein_id AT1G69220.2p  transcript_id AT1G69220.2  protein_id AT1G69220.2p  transcript_id AT1G69220.2  
At1g69230	chr1:026026834	0.0	C/26026834-26027085,26026543-26026623	AT1G69230.1  CDS  gene_syn F4N2.18, SP1L2, SPIRAL1-LIKE2  gene SP1L2  function SPIRAL1-LIKE2 belongs to a six-member gene family in Arabidopsis; all members share a high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root and organ growth as a result of defective anisotropic cell expansion.  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SP1L2 (SPIRAL1-LIKE2)  note SPIRAL1-LIKE2 (SP1L2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: SP1L1 (SPIRAL1-LIKE1) (TAIR:AT1G26355.1); Has 110 Blast hits to 98 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 102; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G69230.1p  transcript_id AT1G69230.1  protein_id AT1G69230.1p  transcript_id AT1G69230.1  
At1g69230	chr1:026026834	0.0	C/26026834-26027085,26026543-26026623	AT1G69230.2  CDS  gene_syn F4N2.18, SP1L2, SPIRAL1-LIKE2  gene SP1L2  function SPIRAL1-LIKE2 belongs to a six-member gene family in Arabidopsis; all members share a high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root and organ growth as a result of defective anisotropic cell expansion.  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SP1L2 (SPIRAL1-LIKE2)  note SPIRAL1-LIKE2 (SP1L2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: SP1L1 (SPIRAL1-LIKE1) (TAIR:AT1G26355.1); Has 110 Blast hits to 98 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 102; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G69230.2p  transcript_id AT1G69230.2  protein_id AT1G69230.2p  transcript_id AT1G69230.2  
At1g69240	chr1:026029691	0.0	C/26029691-26030218,26029055-26029291,26028795-26028938,26028487-26028621,26028115-26028405	AT1G69240.1  CDS  gene_syn ARABIDOPSIS THALIANA METHYL ESTERASE 15, ATMES15, F4N2.19, F4N2_19, MES15, METHYL ESTERASE 15  gene MES15  function Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco but no enzymatic activity has been identified for this protein.  go_component chloroplast|GO:0009507||IEA  go_function hydrolase activity|GO:0016787||ISS  product MES15 (METHYL ESTERASE 15); hydrolase  note METHYL ESTERASE 15 (MES15); FUNCTIONS IN: hydrolase activity; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: MES13 (METHYL ESTERASE 13); hydrolase (TAIR:AT1G26360.1); Has 1767 Blast hits to 1767 proteins in 474 species: Archae - 6; Bacteria - 921; Metazoa - 60; Fungi - 47; Plants - 346; Viruses - 0; Other Eukaryotes - 387 (source: NCBI BLink).  protein_id AT1G69240.1p  transcript_id AT1G69240.1  protein_id AT1G69240.1p  transcript_id AT1G69240.1  
At1g69250	chr1:026033163	0.0	W/26033163-26033336,26033686-26033935,26034028-26034266,26034341-26034512,26034596-26034711,26034810-26034881,26034959-26035019,26035102-26035301	AT1G69250.1  CDS  gene_syn F4N2.20  go_component intracellular|GO:0005622||IEA  go_process transport|GO:0006810||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process nucleocytoplasmic transport|GO:0006913||ISS  go_function RNA binding|GO:0003723||ISS  product nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein  note nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: transport, nucleocytoplasmic transport; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT2G03640.1); Has 1074 Blast hits to 1057 proteins in 152 species: Archae - 0; Bacteria - 18; Metazoa - 644; Fungi - 157; Plants - 180; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT1G69250.1p  transcript_id AT1G69250.1  protein_id AT1G69250.1p  transcript_id AT1G69250.1  
At1g69250	chr1:026033163	0.0	W/26033163-26033336,26033686-26033935,26034028-26034266,26034341-26034512,26034596-26034881,26034959-26035007	AT1G69250.2  CDS  gene_syn F4N2.20  go_component intracellular|GO:0005622||IEA  go_process transport|GO:0006810||IEA  go_process nucleocytoplasmic transport|GO:0006913||ISS  go_function RNA binding|GO:0003723||ISS  product nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein  note nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: transport, nucleocytoplasmic transport; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222); BEST Arabidopsis thaliana protein match is: nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT2G03640.1); Has 640 Blast hits to 633 proteins in 121 species: Archae - 0; Bacteria - 12; Metazoa - 390; Fungi - 84; Plants - 116; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT1G69250.2p  transcript_id AT1G69250.2  protein_id AT1G69250.2p  transcript_id AT1G69250.2  
At1g69252	chr1:026036733	0.0	W/26036733-26037659	AT1G69252.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G69252.1  
At1g69260	chr1:026039314	0.0	W/26039314-26039989,26040209-26040570	AT1G69260.1  CDS  gene_syn ABI FIVE BINDING PROTEIN, AFP1, F4N2.22, F4N2_22  gene AFP1  go_component nucleus|GO:0005634|12569131|TAS  go_process abscisic acid mediated signaling|GO:0009738|12569131|TAS  product AFP1 (ABI FIVE BINDING PROTEIN)  note ABI FIVE BINDING PROTEIN (AFP1); INVOLVED IN: abscisic acid mediated signaling; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1675 (InterPro:IPR012463); BEST Arabidopsis thaliana protein match is: AFP2 (ABI FIVE BINDING PROTEIN 2) (TAIR:AT1G13740.1); Has 161 Blast hits to 160 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 11; Plants - 87; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT1G69260.1p  transcript_id AT1G69260.1  protein_id AT1G69260.1p  transcript_id AT1G69260.1  
At1g69270	chr1:026040877	0.0	C/26040877-26042499	AT1G69270.1  CDS  gene_syn F4N2.27, F4N2_27, RECEPTOR-LIKE PROTEIN KINASE 1, RPK1  gene RPK1  function RPK1 is a leucine-rich receptor-like kinase located in the plasma membrane which is upregulated by abscisic acid, dehydration, high salt, low temperature, but not by other plant hormones. RPK1 knock-out and antisense plants show an ABA-insensitive phenotype. RPK1 plays a role in ABA-controlled cell proliferation and is a regulator of the ABA signal transduction pathway. Overexpression of the LRR domain has a dominant negative effect on RPK1.  go_component plasma membrane|GO:0005886|15772289|IDA  go_process response to cold|GO:0009409|9112773|IEP  go_process response to water deprivation|GO:0009414|9112773|IEP  go_process response to salt stress|GO:0009651|9112773|IEP  go_process abscisic acid mediated signaling|GO:0009738|15772289|IMP  go_function receptor signaling protein serine/threonine kinase activity|GO:0004702|9112773|ISS  go_function protein binding|GO:0005515|9112773|ISS  go_function kinase activity|GO:0016301||ISS  product RPK1 (RECEPTOR-LIKE PROTEIN KINASE 1); kinase/ protein binding / receptor signaling protein serine/threonine kinase  note RECEPTOR-LIKE PROTEIN KINASE 1 (RPK1); FUNCTIONS IN: protein binding, receptor signaling protein serine/threonine kinase activity, kinase activity; INVOLVED IN: response to salt stress, response to water deprivation, abscisic acid mediated signaling, response to cold; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: RPK2 (RECEPTOR-LIKE PROTEIN KINASE 2); ATP binding / kinase/ protein serine/threonine kinase (TAIR:AT3G02130.1); Has 96390 Blast hits to 91828 proteins in 3307 species: Archae - 61; Bacteria - 8208; Metazoa - 39132; Fungi - 7285; Plants - 24850; Viruses - 592; Other Eukaryotes - 16262 (source: NCBI BLink).  protein_id AT1G69270.1p  transcript_id AT1G69270.1  protein_id AT1G69270.1p  transcript_id AT1G69270.1  
At1g69280	chr1:026045856	0.0	C/26045856-26046670,26045485-26045772,26045290-26045389	AT1G69280.1  CDS  gene_syn F4N2.23, F4N2_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G03630.1); Has 963 Blast hits to 496 proteins in 33 species: Archae - 0; Bacteria - 4; Metazoa - 849; Fungi - 9; Plants - 40; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT1G69280.1p  transcript_id AT1G69280.1  protein_id AT1G69280.1p  transcript_id AT1G69280.1  
At1g69290	chr1:026047372	0.0	C/26047372-26049348	AT1G69290.1  CDS  gene_syn F4N2.25  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G68980.1); Has 5388 Blast hits to 2419 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 21; Plants - 5264; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT1G69290.1p  transcript_id AT1G69290.1  protein_id AT1G69290.1p  transcript_id AT1G69290.1  
At1g69300	chr1:026049478	0.0	W/26049478-26049551	AT1G69300.1  tRNA  gene_syn 60009.TRNA-ASN-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asn (anticodon: GTT)  transcript_id AT1G69300.1  
At1g69295	chr1:026051792	0.0	C/26051792-26051843,26051326-26051565,26051215-26051242,26050492-26050840	AT1G69295.1  CDS  gene_syn PDCB4, PLASMODESMATA CALLOSE-BINDING PROTEIN 4  gene PDCB4  function Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and is predicted to bind callose.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasmodesma|GO:0009506|19223515|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function polysaccharide binding|GO:0030247|19223515|ISS  go_function callose binding|GO:0080087|19223515|ISS  product PDCB4 (PLASMODESMATA CALLOSE-BINDING PROTEIN 4); callose binding / polysaccharide binding  note PLASMODESMATA CALLOSE-BINDING PROTEIN 4 (PDCB4); FUNCTIONS IN: callose binding, polysaccharide binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasmodesma, plasma membrane, anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: beta-1,3-glucanase-related (TAIR:AT1G26450.1); Has 27017 Blast hits to 8716 proteins in 690 species: Archae - 131; Bacteria - 5407; Metazoa - 8045; Fungi - 2624; Plants - 1220; Viruses - 604; Other Eukaryotes - 8986 (source: NCBI BLink).  protein_id AT1G69295.1p  transcript_id AT1G69295.1  protein_id AT1G69295.1p  transcript_id AT1G69295.1  
At1g69310	chr1:026057554	0.0	C/26057554-26057909,26056569-26056712,26056118-26056481	AT1G69310.1  CDS  gene_syn AtWRKY57, F23O10.11, F23O10_11, WRKY57  gene WRKY57  function member of WRKY Transcription Factor; Group II-c  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY57; transcription factor  note WRKY57; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY48; transcription factor (TAIR:AT5G49520.1); Has 2041 Blast hits to 1761 proteins in 118 species: Archae - 2; Bacteria - 0; Metazoa - 6; Fungi - 11; Plants - 2004; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G69310.1p  transcript_id AT1G69310.1  protein_id AT1G69310.1p  transcript_id AT1G69310.1  
At1g69310	chr1:026057554	0.0	C/26057554-26057909,26056569-26056712,26056118-26056481	AT1G69310.2  CDS  gene_syn AtWRKY57, F23O10.11, F23O10_11, WRKY57  gene WRKY57  function member of WRKY Transcription Factor; Group II-c  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY57; transcription factor  note WRKY57; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY48; transcription factor (TAIR:AT5G49520.1); Has 2041 Blast hits to 1761 proteins in 118 species: Archae - 2; Bacteria - 0; Metazoa - 6; Fungi - 11; Plants - 2004; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G69310.2p  transcript_id AT1G69310.2  protein_id AT1G69310.2p  transcript_id AT1G69310.2  
At1g69320	chr1:026061925	0.0	W/26061925-26062248	AT1G69320.1  CDS  gene_syn CLAVATA3/ESR-RELATED 10, CLE10, F10D13.2, F10D13_2  gene CLE10  function Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.  go_component apoplast|GO:0048046|11457943|RCA  go_process signal transduction|GO:0007165||ISS  go_function receptor binding|GO:0005102||ISS  go_function protein binding|GO:0005515|11457943|ISS  product CLE10 (CLAVATA3/ESR-RELATED 10); protein binding / receptor binding  note CLAVATA3/ESR-RELATED 10 (CLE10); FUNCTIONS IN: protein binding, receptor binding; INVOLVED IN: signal transduction; LOCATED IN: apoplast; BEST Arabidopsis thaliana protein match is: CLE9 (CLAVATA3/ESR-RELATED 9); protein binding / receptor binding (TAIR:AT1G26600.1); Has 29 Blast hits to 29 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G69320.1p  transcript_id AT1G69320.1  protein_id AT1G69320.1p  transcript_id AT1G69320.1  
At1g69325	chr1:026063205	0.0	W/26063205-26063299,26063376-26063457,26063551-26063736	AT1G69325.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product remorin family protein  note remorin family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal region (InterPro:IPR005516); BEST Arabidopsis thaliana protein match is: remorin family protein (TAIR:AT1G13920.1); Has 208 Blast hits to 204 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 7; Plants - 191; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G69325.1p  transcript_id AT1G69325.1  protein_id AT1G69325.1p  transcript_id AT1G69325.1  
At1g69330	chr1:026064138	0.0	C/26064138-26064950	AT1G69330.1  CDS  gene_syn F23O10.9, F23O10_9  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: ubiquitin-protein ligase (TAIR:AT3G29270.2); Has 225 Blast hits to 225 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 120; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G69330.1p  transcript_id AT1G69330.1  protein_id AT1G69330.1p  transcript_id AT1G69330.1  
At1g69340	chr1:026066298	0.0	W/26066298-26066621,26066722-26066799,26066933-26066988,26067305-26067424,26067550-26067620,26067708-26067801,26068028-26068231,26068314-26068565,26068683-26068791,26068875-26068942,26069051-26069120,26069201-26069275,26069390-26069481,26069569-26069644	AT1G69340.1  CDS  gene_syn F10D13.28, F10D13_28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product appr-1-p processing enzyme family protein  note appr-1-p processing enzyme family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Appr-1-p processing (InterPro:IPR002589); BEST Arabidopsis thaliana protein match is: appr-1-p processing enzyme family protein (TAIR:AT2G40600.1); Has 2230 Blast hits to 2187 proteins in 671 species: Archae - 43; Bacteria - 984; Metazoa - 848; Fungi - 95; Plants - 99; Viruses - 7; Other Eukaryotes - 154 (source: NCBI BLink).  protein_id AT1G69340.1p  transcript_id AT1G69340.1  protein_id AT1G69340.1p  transcript_id AT1G69340.1  
At1g69350	chr1:026069882	0.0	W/26069882-26072245	AT1G69350.1  CDS  gene_syn F10D13.4, F10D13_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: DOT4 (DEFECTIVELY ORGANIZED TRIBUTARIES 4) (TAIR:AT4G18750.1); Has 16976 Blast hits to 5166 proteins in 166 species: Archae - 0; Bacteria - 10; Metazoa - 114; Fungi - 107; Plants - 16303; Viruses - 0; Other Eukaryotes - 442 (source: NCBI BLink).  protein_id AT1G69350.1p  transcript_id AT1G69350.1  protein_id AT1G69350.1p  transcript_id AT1G69350.1  
At1g69360	chr1:026075199	0.0	C/26075199-26075420,26074546-26075101,26072520-26074432	AT1G69360.1  CDS  gene_syn F10D13.5, F10D13_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF863, plant (InterPro:IPR008581); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26620.1); Has 141 Blast hits to 124 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 2; Plants - 128; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G69360.1p  transcript_id AT1G69360.1  protein_id AT1G69360.1p  transcript_id AT1G69360.1  
At1g69370	chr1:026080098	0.0	W/26080098-26080261,26080420-26080645,26080725-26080811,26080913-26081056,26081141-26081233,26081323-26081559	AT1G69370.1  CDS  gene_syn CM3, F10D13.6, F10D13_6, chorismate mutase 3, cm-3  gene CM3  function Encodes chorismate mutase 3 (CM3).  go_component plastid|GO:0009536|10564818|TAS  go_process tryptophan biosynthetic process|GO:0000162|10564818|IDA  go_process aromatic amino acid family biosynthetic process|GO:0009073|8224252|TAS  go_process aromatic amino acid family biosynthetic process|GO:0009073|8953244|TAS  go_process response to biotic stimulus|GO:0009607|10564818|IEP  go_function chorismate mutase activity|GO:0004106|8224252|IGI  go_function chorismate mutase activity|GO:0004106|8953244|IGI  product CM3 (chorismate mutase 3); chorismate mutase  note chorismate mutase 3 (CM3); FUNCTIONS IN: chorismate mutase activity; INVOLVED IN: tryptophan biosynthetic process, response to biotic stimulus, aromatic amino acid family biosynthetic process; LOCATED IN: plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chorismate mutase of the AroQ class, eukaryotic type (InterPro:IPR008238), Chorismate mutase (InterPro:IPR002701); BEST Arabidopsis thaliana protein match is: CM1 (CHORISMATE MUTASE 1); L-ascorbate peroxidase/ chorismate mutase (TAIR:AT3G29200.1); Has 176 Blast hits to 176 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 98; Plants - 71; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G69370.1p  transcript_id AT1G69370.1  protein_id AT1G69370.1p  transcript_id AT1G69370.1  
At1g69380	chr1:026083142	0.0	C/26083142-26083431,26082897-26083011,26082629-26082788,26082394-26082542,26082169-26082320,26081960-26082074,26081729-26081869	AT1G69380.1  CDS  gene_syn F23O10.4, F23O10_4  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF155 (InterPro:IPR003734); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13610.1); Has 367 Blast hits to 367 proteins in 155 species: Archae - 0; Bacteria - 131; Metazoa - 7; Fungi - 147; Plants - 38; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT1G69380.1p  transcript_id AT1G69380.1  protein_id AT1G69380.1p  transcript_id AT1G69380.1  
At1g69390	chr1:026084721	0.0	W/26084721-26084822,26085697-26086284	AT1G69390.1  CDS  gene_syn ATMINE1, Arabidopsis homologue of bacterial MinE 1, F23O10.25, F23O10_25  gene ATMINE1  function Encodes an Arabidopsis homologue of the bacterial MinE topological specificity factor ensuring correct division site placement. It is an essential integral component of the plastid division machinery.  go_component chloroplast|GO:0009507|11743109|IDA  go_process chloroplast fission|GO:0010020|11743109|IMP  go_function protein binding|GO:0005515|16014621|IPI  go_function protein binding|GO:0005515|16146521|IPI  product ATMINE1 (Arabidopsis homologue of bacterial MinE 1); protein binding  note Arabidopsis homologue of bacterial MinE 1 (ATMINE1); FUNCTIONS IN: protein binding; INVOLVED IN: chloroplast fission; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Septum formation topological specificity factor MinE (InterPro:IPR005527); Has 122 Blast hits to 122 proteins in 52 species: Archae - 0; Bacteria - 80; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G69390.1p  transcript_id AT1G69390.1  protein_id AT1G69390.1p  transcript_id AT1G69390.1  
At1g69400	chr1:026087027	0.0	W/26087027-26087131,26087227-26087357,26087458-26087540,26087688-26087939,26088084-26088156,26088248-26088328,26088403-26088484,26088570-26088670,26088770-26088806	AT1G69400.1  CDS  gene_syn F10D13.23, F10D13_23  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein / mitotic checkpoint protein, putative (TAIR:AT1G49910.1); Has 4522 Blast hits to 3369 proteins in 269 species: Archae - 8; Bacteria - 1136; Metazoa - 1397; Fungi - 947; Plants - 245; Viruses - 0; Other Eukaryotes - 789 (source: NCBI BLink).  protein_id AT1G69400.1p  transcript_id AT1G69400.1  protein_id AT1G69400.1p  transcript_id AT1G69400.1  
At1g69400	chr1:026087027	0.0	W/26087027-26087131,26087227-26087357,26087458-26087540,26087688-26087939,26088084-26088156,26088248-26088422	AT1G69400.2  CDS  gene_syn F10D13.23, F10D13_23  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein / mitotic checkpoint protein, putative (TAIR:AT1G49910.1); Has 3557 Blast hits to 2710 proteins in 255 species: Archae - 6; Bacteria - 747; Metazoa - 1183; Fungi - 736; Plants - 178; Viruses - 0; Other Eukaryotes - 707 (source: NCBI BLink).  protein_id AT1G69400.2p  transcript_id AT1G69400.2  protein_id AT1G69400.2p  transcript_id AT1G69400.2  
At1g69410	chr1:026089301	0.0	W/26089301-26089420,26089656-26089778,26089867-26089923,26090018-26090194	AT1G69410.1  CDS  gene_syn ATELF5A-3, ELF5A-3, EUKARYOTIC ELONGATION FACTOR 5A-3, F10D13.8, F10D13_8  gene ELF5A-3  go_process translational initiation|GO:0006413||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_component cellular_component|GO:0005575||ND  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3); translation initiation factor  note EUKARYOTIC ELONGATION FACTOR 5A-3 (ELF5A-3); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Translation protein SH3-like, subgroup (InterPro:IPR014722), Eukaryotic initiation factor 5A hypusine (eIF-5A) (InterPro:IPR001884); BEST Arabidopsis thaliana protein match is: ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1); translation initiation factor (TAIR:AT1G13950.1); Has 986 Blast hits to 984 proteins in 296 species: Archae - 160; Bacteria - 0; Metazoa - 294; Fungi - 163; Plants - 195; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink).  protein_id AT1G69410.1p  transcript_id AT1G69410.1  protein_id AT1G69410.1p  transcript_id AT1G69410.1  
At1g69420	chr1:026093690	0.0	W/26093690-26093731,26093821-26093934,26094460-26094816,26094935-26095003,26095107-26095178,26095359-26095487,26095568-26095648,26095736-26095924,26095999-26096736	AT1G69420.1  CDS  gene_syn F10D13.9, F10D13_9  go_component endomembrane system|GO:0012505||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc finger (DHHC type) family protein  note zinc finger (DHHC type) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: zinc finger (DHHC type) family protein (TAIR:AT4G15080.1); Has 3791 Blast hits to 3785 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 1905; Fungi - 464; Plants - 413; Viruses - 0; Other Eukaryotes - 1009 (source: NCBI BLink).  protein_id AT1G69420.1p  transcript_id AT1G69420.1  protein_id AT1G69420.1p  transcript_id AT1G69420.1  
At1g69420	chr1:026093690	0.0	W/26093690-26093731,26093821-26093934,26094460-26094816,26094935-26095003,26095107-26095178,26095359-26095487,26095568-26095648,26095736-26095924,26095999-26096736	AT1G69420.2  CDS  gene_syn F10D13.9, F10D13_9  go_component endomembrane system|GO:0012505||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc finger (DHHC type) family protein  note zinc finger (DHHC type) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: zinc finger (DHHC type) family protein (TAIR:AT4G15080.1); Has 3791 Blast hits to 3785 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 1905; Fungi - 464; Plants - 413; Viruses - 0; Other Eukaryotes - 1009 (source: NCBI BLink).  protein_id AT1G69420.2p  transcript_id AT1G69420.2  protein_id AT1G69420.2p  transcript_id AT1G69420.2  
At1g69430	chr1:026098025	0.0	W/26098025-26099077	AT1G69430.1  CDS  gene_syn F10D13.10, F10D13_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26650.1); Has 109 Blast hits to 108 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G69430.1p  transcript_id AT1G69430.1  protein_id AT1G69430.1p  transcript_id AT1G69430.1  
At1g69440	chr1:026104668	0.0	C/26104668-26105016,26103040-26104270,26101565-26102957	AT1G69440.1  CDS  gene_syn AGO7, ARGONAUTE7, F10D13.11, F10D13_11, ZIP, ZIPPY  gene AGO7  function Encodes ARGONAUTE7, a member of the ARGONAUTE family, characterised by the presence of PAZ and PIWI domains. Involved in the regulation of developmental timing. Required for the accumulation of TAS3 ta-siRNAs but not for accumulation of miR171, miR173, miR390 or mi391. Localized in mature rosette leaves and floral buds.  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process vegetative phase change|GO:0010050|16682356|IMP  go_process RNA interference, production of ta-siRNAs|GO:0010267|16682356|IMP  go_process RNA interference, production of lsiRNA|GO:0010599|18003861|IMP  go_process RNA interference|GO:0016246|14521841|IEP  go_process gene silencing by miRNA|GO:0035195|14521841|TAS  go_process gene silencing by miRNA, production of miRNAs|GO:0035196|16682356|IMP  go_process regulation of development, heterochronic|GO:0040034|14521841|IMP  product AGO7 (ARGONAUTE7); nucleic acid binding  note ARGONAUTE7 (AGO7); FUNCTIONS IN: nucleic acid binding; INVOLVED IN: in 7 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Argonaute and Dicer protein, PAZ (InterPro:IPR003100), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: AGO1 (ARGONAUTE 1); endoribonuclease/ miRNA binding / protein binding / siRNA binding (TAIR:AT1G48410.1); Has 1569 Blast hits to 1524 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 928; Fungi - 183; Plants - 299; Viruses - 4; Other Eukaryotes - 155 (source: NCBI BLink).  protein_id AT1G69440.1p  transcript_id AT1G69440.1  protein_id AT1G69440.1p  transcript_id AT1G69440.1  
At1g69450	chr1:026109573	0.0	C/26109573-26110006,26109430-26109493,26109089-26109298,26108799-26108969,26108417-26108715,26108054-26108330,26107700-26107975,26107385-26107618,26107120-26107290	AT1G69450.1  CDS  gene_syn F10D13.27, F10D13_27  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  product unknown protein  note LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: HYP1 (HYPOTHETICAL PROTEIN 1) (TAIR:AT3G01100.1); Has 911 Blast hits to 825 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 152; Fungi - 442; Plants - 243; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT1G69450.1p  transcript_id AT1G69450.1  protein_id AT1G69450.1p  transcript_id AT1G69450.1  
At1g69460	chr1:026112948	0.0	C/26112948-26113160,26112660-26112869,26112271-26112347,26112054-26112198	AT1G69460.1  CDS  gene_syn F10D13.26, F10D13_26  go_process transport|GO:0006810||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component membrane|GO:0016020||ISS  go_process intracellular protein transport|GO:0006886||ISS  go_function protein transmembrane transporter activity|GO:0008320||ISS  product emp24/gp25L/p24 family protein  note emp24/gp25L/p24 family protein; FUNCTIONS IN: protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: guard cell, callus; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family protein (TAIR:AT1G26690.1); Has 1075 Blast hits to 1073 proteins in 173 species: Archae - 0; Bacteria - 0; Metazoa - 530; Fungi - 308; Plants - 128; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).  protein_id AT1G69460.1p  transcript_id AT1G69460.1  protein_id AT1G69460.1p  transcript_id AT1G69460.1  
At1g69470	chr1:026113575	0.0	W/26113575-26113997	AT1G69470.1  CDS  gene_syn F10D13.12, F10D13_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G69470.1p  transcript_id AT1G69470.1  protein_id AT1G69470.1p  transcript_id AT1G69470.1  
At1g69480	chr1:026116927	0.0	C/26116927-26117479,26116519-26116846,26116373-26116421,26116185-26116256,26115973-26116102,26115775-26115895,26115421-26115679,26115230-26115334,26115116-26115160,26114880-26115029,26114505-26114783,26114187-26114429	AT1G69480.1  CDS  gene_syn F10D13.13, F10D13_13  go_component plasma membrane|GO:0005886|17317660|IDA  go_component integral to membrane|GO:0016021||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product EXS family protein / ERD1/XPR1/SYG1 family protein  note EXS family protein / ERD1/XPR1/SYG1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, plasma membrane; EXPRESSED IN: stem, sepal, seed, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: EXS, C-terminal (InterPro:IPR004342), SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: EXS family protein / ERD1/XPR1/SYG1 family protein (TAIR:AT1G26730.1); Has 737 Blast hits to 701 proteins in 147 species: Archae - 0; Bacteria - 8; Metazoa - 242; Fungi - 253; Plants - 123; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).  protein_id AT1G69480.1p  transcript_id AT1G69480.1  protein_id AT1G69480.1p  transcript_id AT1G69480.1  
At1g69485	chr1:026119425	0.0	C/26119425-26119576,26119313-26119376,26118927-26119000,26118533-26118620	AT1G69485.1  CDS  go_component large ribosomal subunit|GO:0015934||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  product structural constituent of ribosome  note structural constituent of ribosome; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: large ribosomal subunit; CONTAINS InterPro DOMAIN/s: Ribosomal protein L32p (InterPro:IPR002677); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT1G26740.1); Has 48 Blast hits to 48 proteins in 16 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 2; Plants - 31; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G69485.1p  transcript_id AT1G69485.1  protein_id AT1G69485.1p  transcript_id AT1G69485.1  
At1g69490	chr1:026122233	0.0	W/26122233-26122398,26122496-26122776,26122863-26123222	AT1G69490.1  CDS  gene_syn ANAC029, ARABIDOPSIS NAC DOMAIN PROTEIN 029, ATNAP, F10D13.14, F10D13_14, NAC-LIKE, ACTIVATED BY AP3/PI, NAC-like, activated by AP3/PI, NAP  gene NAP  function Encodes a member of the NAC transcription factor gene family. It is expressed in floral primordia and upregulated by AP3 and PI. Its expression is associated with leaf senescence.  go_component nucleus|GO:0005634|16640597|IDA  go_process multicellular organismal development|GO:0007275||ISS  go_process multidimensional cell growth|GO:0009825|9489703|IMP  go_process flower development|GO:0009908|9489703|IMP  go_process leaf senescence|GO:0010150|16640597|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product NAP (NAC-like, activated by AP3/PI); transcription factor  note NAC-like, activated by AP3/PI (NAP); FUNCTIONS IN: transcription factor activity; INVOLVED IN: flower development, multicellular organismal development, leaf senescence, multidimensional cell growth; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac025 (Arabidopsis NAC domain containing protein 25); transcription factor (TAIR:AT1G61110.1); Has 1645 Blast hits to 1642 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1645; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G69490.1p  transcript_id AT1G69490.1  protein_id AT1G69490.1p  transcript_id AT1G69490.1  
At1g69500	chr1:026123960	0.0	W/26123960-26124235,26124307-26124522,26124594-26124908,26124992-26125378,26125458-26125658,26125730-26125909	AT1G69500.1  CDS  gene_syn F10D13.15, F10D13_15  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component cellular_component|GO:0005575||ND  go_process pollen exine formation|GO:0010584||IMP  go_function oxygen binding|GO:0019825||ISS  product electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: pollen exine formation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP704A2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT2G45510.1); Has 17750 Blast hits to 17696 proteins in 1003 species: Archae - 19; Bacteria - 1369; Metazoa - 8157; Fungi - 3231; Plants - 4336; Viruses - 3; Other Eukaryotes - 635 (source: NCBI BLink).  protein_id AT1G69500.1p  transcript_id AT1G69500.1  protein_id AT1G69500.1p  transcript_id AT1G69500.1  
At1g69510	chr1:026126779	0.0	W/26126779-26126856,26127009-26127071,26127151-26127198,26127323-26127376,26127460-26127520,26127616-26127725	AT1G69510.1  CDS  gene_syn F10D13.16, F10D13_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lg106-like (InterPro:IPR012482); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64130.1); Has 92 Blast hits to 92 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G69510.1p  transcript_id AT1G69510.1  protein_id AT1G69510.1p  transcript_id AT1G69510.1  
At1g69510	chr1:026126779	0.0	W/26126779-26126856,26127009-26127071,26127151-26127198,26127323-26127376,26127460-26127520,26127616-26127725	AT1G69510.2  CDS  gene_syn F10D13.16, F10D13_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lg106-like (InterPro:IPR012482); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64130.1); Has 92 Blast hits to 92 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G69510.2p  transcript_id AT1G69510.2  protein_id AT1G69510.2p  transcript_id AT1G69510.2  
At1g69510	chr1:026126779	0.0	W/26126779-26126856,26127009-26127071,26127151-26127198,26127323-26127376,26127460-26127520,26127616-26127725	AT1G69510.3  CDS  gene_syn F10D13.16, F10D13_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lg106-like (InterPro:IPR012482); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64130.1); Has 92 Blast hits to 92 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G69510.3p  transcript_id AT1G69510.3  protein_id AT1G69510.3p  transcript_id AT1G69510.3  
At1g69520	chr1:026128288	0.0	W/26128288-26128402,26128625-26128684,26128779-26129032,26129105-26129201,26129267-26129329,26129403-26129602	AT1G69520.1  CDS  gene_syn F10D13.17, F10D13_17  go_process metabolic process|GO:0008152||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  product methyltransferase-related  note methyltransferase-related; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: UbiE/COQ5 methyltransferase family protein (TAIR:AT1G69526.2); Has 6010 Blast hits to 6008 proteins in 1056 species: Archae - 229; Bacteria - 3455; Metazoa - 153; Fungi - 190; Plants - 135; Viruses - 0; Other Eukaryotes - 1848 (source: NCBI BLink).  protein_id AT1G69520.1p  transcript_id AT1G69520.1  protein_id AT1G69520.1p  transcript_id AT1G69520.1  
At1g69523	chr1:026129827	0.0	W/26129827-26130057,26130152-26130247,26130331-26130549,26130634-26130730,26130807-26130869,26130961-26131157	AT1G69523.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process metabolic process|GO:0008152||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_function methyltransferase activity|GO:0008168||ISS  product UbiE/COQ5 methyltransferase family protein  note UbiE/COQ5 methyltransferase family protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: UbiE/COQ5 methyltransferase family protein (TAIR:AT1G69526.2); Has 5366 Blast hits to 5364 proteins in 1056 species: Archae - 181; Bacteria - 3232; Metazoa - 159; Fungi - 204; Plants - 122; Viruses - 0; Other Eukaryotes - 1468 (source: NCBI BLink).  protein_id AT1G69523.1p  transcript_id AT1G69523.1  protein_id AT1G69523.1p  transcript_id AT1G69523.1  
At1g69526	chr1:026131493	0.0	W/26131493-26131741,26131951-26132046,26132140-26132358,26132437-26132533,26132598-26132660,26132735-26132934	AT1G69526.2  CDS  go_component chloroplast|GO:0009507||IEA  go_process metabolic process|GO:0008152||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_function methyltransferase activity|GO:0008168||ISS  product UbiE/COQ5 methyltransferase family protein  note UbiE/COQ5 methyltransferase family protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: UbiE/COQ5 methyltransferase family protein (TAIR:AT1G69523.1); Has 5392 Blast hits to 5390 proteins in 1086 species: Archae - 190; Bacteria - 3088; Metazoa - 198; Fungi - 177; Plants - 111; Viruses - 0; Other Eukaryotes - 1628 (source: NCBI BLink).  protein_id AT1G69526.2p  transcript_id AT1G69526.2  protein_id AT1G69526.2p  transcript_id AT1G69526.2  
At1g69526	chr1:026131493	0.0	W/26131493-26131741,26131951-26132046,26132140-26132388	AT1G69526.3  CDS  go_component chloroplast|GO:0009507||IEA  go_function methyltransferase activity|GO:0008168||ISS  product UbiE/COQ5 methyltransferase family protein  note UbiE/COQ5 methyltransferase family protein; FUNCTIONS IN: methyltransferase activity; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: UbiE/COQ5 methyltransferase family protein (TAIR:AT1G69523.1).  protein_id AT1G69526.3p  transcript_id AT1G69526.3  protein_id AT1G69526.3p  transcript_id AT1G69526.3  
At1g69526	chr1:026131493	0.0	W/26131493-26131741,26131951-26132388	AT1G69526.1  CDS  go_component chloroplast|GO:0009507||IEA  go_function methyltransferase activity|GO:0008168||ISS  product UbiE/COQ5 methyltransferase family protein  note UbiE/COQ5 methyltransferase family protein; FUNCTIONS IN: methyltransferase activity; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: UbiE/COQ5 methyltransferase family protein (TAIR:AT1G69523.1); Has 48 Blast hits to 46 proteins in 16 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G69526.1p  transcript_id AT1G69526.1  protein_id AT1G69526.1p  transcript_id AT1G69526.1  
At1g69530	chr1:026142034	0.0	W/26142034-26142166,26142262-26142574,26142745-26143034,26143109-26143200	AT1G69530.3  CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN A1, AT-EXP1, ATEXP1, ATEXPA1, ATHEXP ALPHA 1.2, EXP1, EXPANSIN 1, F10D13.18, F10D13_18  gene ATEXPA1  function Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process syncytium formation|GO:0006949|16942607|IEP  go_process response to gibberellin stimulus|GO:0009739|17449805|TAS  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828||ISS  go_process response to red light|GO:0010114|17449805|IEP  product ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1)  note ARABIDOPSIS THALIANA EXPANSIN A1 (ATEXPA1); INVOLVED IN: response to gibberellin stimulus, syncytium formation, response to red light, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10); structural constituent of cell wall (TAIR:AT1G26770.2); Has 1459 Blast hits to 1458 proteins in 138 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 35; Plants - 1384; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT1G69530.3p  transcript_id AT1G69530.3  protein_id AT1G69530.3p  transcript_id AT1G69530.3  
At1g69530	chr1:026142034	0.0	W/26142034-26142166,26142262-26142574,26142745-26143034,26143112-26143200	AT1G69530.4  CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN A1, AT-EXP1, ATEXP1, ATEXPA1, ATHEXP ALPHA 1.2, EXP1, EXPANSIN 1, F10D13.18, F10D13_18  gene ATEXPA1  function Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process syncytium formation|GO:0006949|16942607|IEP  go_process response to gibberellin stimulus|GO:0009739|17449805|TAS  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828||ISS  go_process response to red light|GO:0010114|17449805|IEP  product ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1)  note ARABIDOPSIS THALIANA EXPANSIN A1 (ATEXPA1); INVOLVED IN: response to gibberellin stimulus, syncytium formation, response to red light, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10); structural constituent of cell wall (TAIR:AT1G26770.2); Has 1473 Blast hits to 1472 proteins in 139 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 36; Plants - 1397; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT1G69530.4p  transcript_id AT1G69530.4  protein_id AT1G69530.4p  transcript_id AT1G69530.4  
At1g69530	chr1:026142034	0.0	W/26142034-26142166,26142262-26142574,26142745-26143051	AT1G69530.1  CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN A1, AT-EXP1, ATEXP1, ATEXPA1, ATHEXP ALPHA 1.2, EXP1, EXPANSIN 1, F10D13.18, F10D13_18  gene ATEXPA1  function Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process syncytium formation|GO:0006949|16942607|IEP  go_process response to gibberellin stimulus|GO:0009739|17449805|TAS  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828||ISS  go_process response to red light|GO:0010114|17449805|IEP  product ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1)  note ARABIDOPSIS THALIANA EXPANSIN A1 (ATEXPA1); INVOLVED IN: response to gibberellin stimulus, syncytium formation, response to red light, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10); structural constituent of cell wall (TAIR:AT1G26770.2); Has 1459 Blast hits to 1458 proteins in 138 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 35; Plants - 1384; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT1G69530.1p  transcript_id AT1G69530.1  protein_id AT1G69530.1p  transcript_id AT1G69530.1  
At1g69530	chr1:026142034	0.0	W/26142034-26142166,26142262-26142574,26142745-26143051	AT1G69530.2  CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN A1, AT-EXP1, ATEXP1, ATEXPA1, ATHEXP ALPHA 1.2, EXP1, EXPANSIN 1, F10D13.18, F10D13_18  gene ATEXPA1  function Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process syncytium formation|GO:0006949|16942607|IEP  go_process response to gibberellin stimulus|GO:0009739|17449805|TAS  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828||ISS  go_process response to red light|GO:0010114|17449805|IEP  product ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1)  note ARABIDOPSIS THALIANA EXPANSIN A1 (ATEXPA1); INVOLVED IN: response to gibberellin stimulus, syncytium formation, response to red light, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10); structural constituent of cell wall (TAIR:AT1G26770.2); Has 1459 Blast hits to 1458 proteins in 138 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 35; Plants - 1384; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT1G69530.2p  transcript_id AT1G69530.2  protein_id AT1G69530.2p  transcript_id AT1G69530.2  
At1g69540	chr1:026146975	0.0	C/26146975-26147159,26146832-26146888,26146710-26146728,26146551-26146618,26146419-26146434,26146280-26146341,26146097-26146193,26145959-26146015,26145413-26145877,26145306-26145314	AT1G69540.1  CDS  gene_syn AGAMOUS-LIKE 94, AGL94, F10D13.25, F10D13_25  gene AGL94  function Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL94 (AGAMOUS-LIKE 94); DNA binding / transcription factor  note AGAMOUS-LIKE 94 (AGL94); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT2G03060.2); Has 4199 Blast hits to 4198 proteins in 553 species: Archae - 0; Bacteria - 0; Metazoa - 544; Fungi - 194; Plants - 3417; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT1G69540.1p  transcript_id AT1G69540.1  protein_id AT1G69540.1p  transcript_id AT1G69540.1  
At1g69543	chr1:026148437	0.0	W/26148437-26148781	AT1G69543.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G74220  
At1g69545	chr1:026148836	0.0	C/26148836-26150947	AT1G69545.1  CDS  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT3G25510.1); Has 82075 Blast hits to 21121 proteins in 775 species: Archae - 56; Bacteria - 4756; Metazoa - 15304; Fungi - 1145; Plants - 53513; Viruses - 54; Other Eukaryotes - 7247 (source: NCBI BLink).  protein_id AT1G69545.1p  transcript_id AT1G69545.1  protein_id AT1G69545.1p  transcript_id AT1G69545.1  
At1g69550	chr1:026152704	0.0	C/26152704-26153374,26151523-26152627,26151089-26151424	AT1G69550.1  CDS  gene_syn F10D13.24, F10D13_24  go_component endomembrane system|GO:0012505||IEA  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS class), putative  note disease resistance protein (TIR-NBS class), putative; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane, endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G11250.1); Has 5916 Blast hits to 5753 proteins in 201 species: Archae - 0; Bacteria - 51; Metazoa - 26; Fungi - 2; Plants - 5805; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT1G69550.1p  transcript_id AT1G69550.1  protein_id AT1G69550.1p  transcript_id AT1G69550.1  
At1g69560	chr1:026157755	0.0	W/26157755-26158178,26158255-26158623,26158707-26158906	AT1G69560.1  CDS  gene_syn AtMYB105, F10D13.19, F10D13_19, MYB105, myb domain protein 105  gene MYB105  function Encodes a putative transcription factor (MYB105).  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product MYB105 (myb domain protein 105); DNA binding / transcription factor  note myb domain protein 105 (MYB105); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: leaf whorl, embryo, sepal, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb family transcription factor (MYB117) (TAIR:AT1G26780.2); Has 6262 Blast hits to 5551 proteins in 370 species: Archae - 0; Bacteria - 0; Metazoa - 756; Fungi - 366; Plants - 3380; Viruses - 6; Other Eukaryotes - 1754 (source: NCBI BLink).  protein_id AT1G69560.1p  transcript_id AT1G69560.1  protein_id AT1G69560.1p  transcript_id AT1G69560.1  
At1g69572	chr1:026161599	0.0	W/26161599-26162761	AT1G69572.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G69570  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G69572.1  
At1g69570	chr1:026163051	0.0	C/26163051-26163230,26161771-26162790	AT1G69570.1  CDS  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product Dof-type zinc finger domain-containing protein  note Dof-type zinc finger domain-containing protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT1G26790.1); Has 846 Blast hits to 683 proteins in 61 species: Archae - 0; Bacteria - 6; Metazoa - 39; Fungi - 7; Plants - 624; Viruses - 0; Other Eukaryotes - 170 (source: NCBI BLink).  protein_id AT1G69570.1p  transcript_id AT1G69570.1  protein_id AT1G69570.1p  transcript_id AT1G69570.1  
At1g69580	chr1:026172127	0.0	W/26172127-26172301,26172392-26172468,26172558-26172606,26172735-26172834,26172914-26172986,26173073-26173612	AT1G69580.2  CDS  gene_syn F24J1.30, F24J1_30  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT3G04030.3); Has 911 Blast hits to 902 proteins in 41 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 0; Plants - 891; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G69580.2p  transcript_id AT1G69580.2  protein_id AT1G69580.2p  transcript_id AT1G69580.2  
At1g69580	chr1:026172127	0.0	W/26172127-26172301,26172392-26172468,26172558-26172606,26172735-26172834,26172917-26172986,26173073-26173612	AT1G69580.1  CDS  gene_syn F24J1.30, F24J1_30  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT3G04030.3); Has 918 Blast hits to 909 proteins in 43 species: Archae - 0; Bacteria - 2; Metazoa - 11; Fungi - 0; Plants - 892; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G69580.1p  transcript_id AT1G69580.1  protein_id AT1G69580.1p  transcript_id AT1G69580.1  
At1g69587	chr1:026175654	0.0	C/26175654-26179351	AT1G69587.1  ncRNA  function Expressed gene.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G69587.1  
At1g69588	chr1:026178150	0.0	W/26178150-26178524	AT1G69588.1  CDS  gene_syn CLAVATA3/ESR-RELATED 45, CLE45  gene CLE45  function Belongs to a large gene family, called CLE for CLAVATA3/ESR-related, encoding small peptides with conserved carboxyl termini  go_component endomembrane system|GO:0012505||IEA  product CLE45 (CLAVATA3/ESR-RELATED 45)  note CLAVATA3/ESR-RELATED 45 (CLE45); LOCATED IN: endomembrane system; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G69588.1p  transcript_id AT1G69588.1  protein_id AT1G69588.1p  transcript_id AT1G69588.1  
At1g69590	chr1:026179663	0.0	C/26179663-26180244	AT1G69590.1  pseudogenic_transcript  pseudo  gene_syn F24J1.32  note pseudogene, similar to SAE1-S9-protein, blastp match of 31% identity and 1.7e-11 P-value to GP|4760708|dbj|BAA77394.1||AB012866 SAE1-S9-protein {Brassica rapa}  
At1g69600	chr1:026182470	0.0	W/26182470-26183198	AT1G69600.1  CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, ATHB29, F24J1.29, F24J1_29, ZFHD1, ZINC FINGER HOMEODOMAIN 1  gene ZFHD1  function Encodes ZFHD1, a member of the zinc finger homeodomain transcriptional factor family. Binds to the 62 bp promoter region of ERD1 (early responsive to dehydration stress 1). Expression of ZFHD1 is induced by drought, high salinity and abscisic acid.  go_component cellular_component|GO:0005575||ND  go_process response to water deprivation|GO:0009414|17233795|IMP  go_function DNA binding|GO:0003677|16428600|ISS  go_function DNA binding|GO:0003677|17233795|IDA  go_function transcription factor activity|GO:0003700|17233795|IDA  go_function transcription factor activity|GO:0003700||ISS  go_function transcription activator activity|GO:0016563|17233795|IDA  product ZFHD1 (ZINC FINGER HOMEODOMAIN 1); DNA binding / transcription activator/ transcription factor  note ZINC FINGER HOMEODOMAIN 1 (ZFHD1); FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: response to water deprivation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein Cys/His-rich dimerisation region (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: AtHB26 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 26); DNA binding / transcription factor (TAIR:AT5G60480.1); Has 254 Blast hits to 248 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 254; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G69600.1p  transcript_id AT1G69600.1  protein_id AT1G69600.1p  transcript_id AT1G69600.1  
At1g69610	chr1:026186954	0.0	W/26186954-26187108,26187193-26188058,26188288-26188689,26188770-26188996,26189089-26189349	AT1G69610.1  CDS  gene_syn F24J1.24  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function structural constituent of ribosome|GO:0003735||IEA  product structural constituent of ribosome  note structural constituent of ribosome; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: N-terminal protein myristoylation, translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e (InterPro:IPR008195), Protein of unknown function DUF1666 (InterPro:IPR012870); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT5G39785.1); Has 228 Blast hits to 217 proteins in 52 species: Archae - 0; Bacteria - 13; Metazoa - 36; Fungi - 25; Plants - 50; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT1G69610.1p  transcript_id AT1G69610.1  protein_id AT1G69610.1p  transcript_id AT1G69610.1  
At1g69620	chr1:026189900	0.0	W/26189900-26189978,26190077-26190156,26190797-26190906,26190991-26191081	AT1G69620.1  CDS  gene_syn F24J1.23, RIBOSOMAL PROTEIN L34, RPL34  gene RPL34  function putative 60S ribosomal protein L34  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component large ribosomal subunit|GO:0015934||TAS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process translation|GO:0006412||TAS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product RPL34 (RIBOSOMAL PROTEIN L34); structural constituent of ribosome  note RIBOSOMAL PROTEIN L34 (RPL34); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, ribosome, plasma membrane, large ribosomal subunit, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e, conserved site (InterPro:IPR018065), Ribosomal protein L34e (InterPro:IPR008195); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L34 (RPL34A) (TAIR:AT1G26880.1); Has 598 Blast hits to 598 proteins in 236 species: Archae - 43; Bacteria - 0; Metazoa - 237; Fungi - 98; Plants - 100; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).  protein_id AT1G69620.1p  transcript_id AT1G69620.1  protein_id AT1G69620.1p  transcript_id AT1G69620.1  
At1g69630	chr1:026192233	0.0	C/26192233-26193174,26192013-26192153,26191640-26191912	AT1G69630.1  CDS  gene_syn F24J1.28  go_component cellular_component|GO:0005575||ND  product F-box family protein  note F-box family protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G78750.1); Has 1481 Blast hits to 1450 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1478; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G69630.1p  transcript_id AT1G69630.1  protein_id AT1G69630.1p  transcript_id AT1G69630.1  
At1g69640	chr1:026195239	0.0	C/26195239-26195466,26193933-26194487	AT1G69640.1  CDS  gene_syn F24J1.22, SBH1, SPHINGOID BASE HYDROXYLASE 1  gene SBH1  function Encodes one of the two redundant sphingoid base hydroxylases (SBH). Involved in sphingolipid trihydroxy long-chain base (4-hydroxysphinganine) biosynthesis. Double mutants of SBHs were dwarfed and not able to progress from vegetative to reproductive growth.  go_component endoplasmic reticulum|GO:0005783|18643979|IDA  go_component Golgi apparatus|GO:0005794|18643979|IDA  go_process photomorphogenesis|GO:0009640|18612100|IMP  go_process sphingoid biosynthetic process|GO:0046520|18612100|IMP  go_function sphingosine hydroxylase activity|GO:0000170|11297741|IGI  go_function catalytic activity|GO:0003824||ISS  product SBH1 (SPHINGOID BASE HYDROXYLASE 1); catalytic/ sphingosine hydroxylase  note SPHINGOID BASE HYDROXYLASE 1 (SBH1); FUNCTIONS IN: sphingosine hydroxylase activity, catalytic activity; INVOLVED IN: sphingoid biosynthetic process, photomorphogenesis; LOCATED IN: endoplasmic reticulum, Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: SBH2 (SPHINGOID BASE HYDROXYLASE 2); catalytic/ sphingosine hydroxylase (TAIR:AT1G14290.1); Has 1798 Blast hits to 1761 proteins in 288 species: Archae - 0; Bacteria - 302; Metazoa - 378; Fungi - 471; Plants - 250; Viruses - 2; Other Eukaryotes - 395 (source: NCBI BLink).  protein_id AT1G69640.1p  transcript_id AT1G69640.1  protein_id AT1G69640.1p  transcript_id AT1G69640.1  
At1g69650	chr1:026198650	0.0	C/26198650-26198821,26198391-26198540,26198258-26198310,26198023-26198207,26197772-26197938,26197498-26197655	AT1G69650.1  CDS  gene_syn F24J1.27  go_component vacuole|GO:0005773|15539469|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT3G22080.1); Has 322 Blast hits to 316 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 55; Fungi - 2; Plants - 257; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G69650.1p  transcript_id AT1G69650.1  protein_id AT1G69650.1p  transcript_id AT1G69650.1  
At1g69660	chr1:026200516	0.0	C/26200516-26200603,26200146-26200428,26199878-26200044,26199623-26199780	AT1G69660.1  CDS  gene_syn F24J1.26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT1G69650.1); Has 354 Blast hits to 318 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 11; Plants - 323; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G69660.1p  transcript_id AT1G69660.1  protein_id AT1G69660.1p  transcript_id AT1G69660.1  
At1g69670	chr1:026204282	0.0	C/26204282-26204442,26202169-26204206	AT1G69670.1  CDS  gene_syn ARABIDOPSIS THALIANA CULLIN 3B, ATCUL3B, CUL3B, CULLIN 3B, T6C23.13, T6C23_13  gene CUL3B  function cullin, putative, contains similarity to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with members of AtBPM family and RBX1 suggesting it is part of an E3 ligase complex involved in RUB modification.  go_component ubiquitin ligase complex|GO:0000151|11019805|TAS  go_component SCF ubiquitin ligase complex|GO:0019005|15659098|IPI  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process cell cycle|GO:0007049||ISS  go_process embryonic development ending in seed dormancy|GO:0009793|16045478|IGI  go_process endosperm development|GO:0009960|16045478|IGI  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|15618422|IPI  go_function protein binding|GO:0005515|15659098|IPI  go_function protein binding|GO:0005515|15749712|IPI  product CUL3B (CULLIN 3B); protein binding / ubiquitin-protein ligase  note CULLIN 3B (CUL3B); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: embryonic development ending in seed dormancy, cell cycle, endosperm development, ubiquitin-dependent protein catabolic process; LOCATED IN: SCF ubiquitin ligase complex, ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Cullin homology (InterPro:IPR016158), Cullin, N-terminal region (InterPro:IPR001373), Cullin repeat-like (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3); protein binding / ubiquitin-protein ligase (TAIR:AT1G26830.1); Has 1723 Blast hits to 1693 proteins in 172 species: Archae - 0; Bacteria - 3; Metazoa - 872; Fungi - 296; Plants - 203; Viruses - 0; Other Eukaryotes - 349 (source: NCBI BLink).  protein_id AT1G69670.1p  transcript_id AT1G69670.1  protein_id AT1G69670.1p  transcript_id AT1G69670.1  
At1g69680	chr1:026205148	0.0	W/26205148-26205222,26205302-26205337,26205437-26205574,26205885-26205971,26206051-26206098,26206186-26206262,26206421-26206568	AT1G69680.1  CDS  gene_syn T6C23.12, T6C23_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Ran-interacting Mog1 protein (InterPro:IPR007681), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); Has 202 Blast hits to 202 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 55; Fungi - 83; Plants - 25; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT1G69680.1p  transcript_id AT1G69680.1  protein_id AT1G69680.1p  transcript_id AT1G69680.1  
At1g69690	chr1:026216449	0.0	W/26216449-26217426	AT1G69690.1  CDS  gene_syn T6C23.11, T6C23_11  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product TCP family transcription factor, putative  note TCP family transcription factor, putative; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: AtTCP14 (TEOSINTE BRANCHED1, CYCLOIDEA and PCF (TCP) 14); transcription factor (TAIR:AT3G47620.1); Has 658 Blast hits to 655 proteins in 114 species: Archae - 0; Bacteria - 6; Metazoa - 116; Fungi - 16; Plants - 496; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT1G69690.1p  transcript_id AT1G69690.1  protein_id AT1G69690.1p  transcript_id AT1G69690.1  
At1g69700	chr1:026220337	0.0	W/26220337-26220404,26220650-26220676,26221037-26221159,26221241-26221499,26221586-26221663	AT1G69700.1  CDS  gene_syn ATHVA22C, T6C23.10, T6C23_10  gene ATHVA22C  function Part of the AtHVA22 family. Protein expression is ABA- and stress-inducible.  go_component endomembrane system|GO:0012505||IEA  go_process response to water deprivation|GO:0009414|12081371|IEP  go_process response to abscisic acid stimulus|GO:0009737|12081371|IEP  go_process hyperosmotic salinity response|GO:0042538|12081371|IEP  go_function molecular_function|GO:0003674||ND  product ATHVA22C  note ATHVA22C; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to water deprivation, hyperosmotic salinity response, response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TB2/DP1 and HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: ATHVA22A (TAIR:AT1G74520.1); Has 997 Blast hits to 996 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 498; Fungi - 142; Plants - 301; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT1G69700.1p  transcript_id AT1G69700.1  protein_id AT1G69700.1p  transcript_id AT1G69700.1  
At1g69710	chr1:026222509	0.0	W/26222509-26222556,26222775-26222861,26222960-26223049,26223255-26223335,26223422-26223586,26223659-26225743,26225833-26225979,26226058-26226350,26226440-26226530	AT1G69710.1  CDS  gene_syn T6C23.9, T6C23_9  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_function chromatin binding|GO:0003682||ISS  go_function zinc ion binding|GO:0008270||ISS  go_function Ran GTPase binding|GO:0008536||ISS  product zinc finger protein, putative / regulator of chromosome condensation (RCC1) family protein  note zinc finger protein, putative / regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: chromatin binding, zinc ion binding, Ran GTPase binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Pleckstrin homology (InterPro:IPR001849), Zinc finger, FYVE-type (InterPro:IPR000306), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Zinc finger, FYVE-related (InterPro:IPR017455), Pleckstrin homology-type (InterPro:IPR011993), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Ran GTPase binding / chromatin binding / zinc ion binding (TAIR:AT5G19420.1); Has 19203 Blast hits to 7873 proteins in 436 species: Archae - 71; Bacteria - 1671; Metazoa - 8860; Fungi - 1055; Plants - 1528; Viruses - 5; Other Eukaryotes - 6013 (source: NCBI BLink).  protein_id AT1G69710.1p  transcript_id AT1G69710.1  protein_id AT1G69710.1p  transcript_id AT1G69710.1  
At1g69720	chr1:026227178	0.0	W/26227178-26227610,26227840-26228063,26228138-26228164	AT1G69720.2  CDS  gene_syn HEME OXYGENASE 3, T6C23.8, T6C23_8, ho3  gene ho3  function Encodes a member (HO3) of the heme oxygenase family.  go_process heme oxidation|GO:0006788||ISS  go_function heme oxygenase (decyclizing) activity|GO:0004392|16428602|IDA  go_function heme oxygenase (decyclizing) activity|GO:0004392||ISS  product ho3 (HEME OXYGENASE 3); heme oxygenase (decyclizing)  note HEME OXYGENASE 3 (ho3); FUNCTIONS IN: heme oxygenase (decyclizing) activity; INVOLVED IN: heme oxidation; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Haem oxygenase-like, multi-helical (InterPro:IPR016084); BEST Arabidopsis thaliana protein match is: TED4 (REVERSAL OF THE DET PHENOTYPE 4); heme oxygenase (decyclizing) (TAIR:AT2G26670.1); Has 191 Blast hits to 191 proteins in 52 species: Archae - 0; Bacteria - 53; Metazoa - 4; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT1G69720.2p  transcript_id AT1G69720.2  protein_id AT1G69720.2p  transcript_id AT1G69720.2  
At1g69720	chr1:026227178	0.0	W/26227178-26227610,26227840-26228063,26228146-26228253,26228327-26228419	AT1G69720.1  CDS  gene_syn HEME OXYGENASE 3, T6C23.8, T6C23_8, ho3  gene ho3  function Encodes a member (HO3) of the heme oxygenase family.  go_process heme oxidation|GO:0006788||IEA  go_process heme oxidation|GO:0006788||ISS  go_function heme oxygenase (decyclizing) activity|GO:0004392|16428602|IDA  go_function heme oxygenase (decyclizing) activity|GO:0004392||ISS  product ho3 (HEME OXYGENASE 3); heme oxygenase (decyclizing)  note HEME OXYGENASE 3 (ho3); FUNCTIONS IN: heme oxygenase (decyclizing) activity; INVOLVED IN: heme oxidation; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Haem oxygenase-like, multi-helical (InterPro:IPR016084), Haem oxygenase-like (InterPro:IPR016053), Haem oxygenase (decyclizing), plant (InterPro:IPR016951); BEST Arabidopsis thaliana protein match is: TED4 (REVERSAL OF THE DET PHENOTYPE 4); heme oxygenase (decyclizing) (TAIR:AT2G26670.1); Has 430 Blast hits to 430 proteins in 100 species: Archae - 0; Bacteria - 127; Metazoa - 107; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).  protein_id AT1G69720.1p  transcript_id AT1G69720.1  protein_id AT1G69720.1p  transcript_id AT1G69720.1  
At1g69730	chr1:026230328	0.0	C/26230328-26231339,26230090-26230203,26228703-26229955	AT1G69730.1  CDS  gene_syn T6C23.7, T6C23_7  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695), Protein kinase, ATP binding site (InterPro:IPR017441), EGF-like calcium-binding, conserved site (InterPro:IPR018097), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: wall-associated kinase, putative (TAIR:AT1G79680.1); Has 85996 Blast hits to 84814 proteins in 3041 species: Archae - 44; Bacteria - 7473; Metazoa - 38157; Fungi - 6592; Plants - 18653; Viruses - 458; Other Eukaryotes - 14619 (source: NCBI BLink).  protein_id AT1G69730.1p  transcript_id AT1G69730.1  protein_id AT1G69730.1p  transcript_id AT1G69730.1  
At1g69740	chr1:026232197	0.0	W/26232197-26232502,26232910-26233021,26233106-26233179,26233260-26233328,26233411-26233494,26233587-26233656,26233727-26233782,26233870-26233991,26234069-26234140,26234226-26234307,26234380-26234457,26234546-26234713	AT1G69740.1  CDS  gene_syn HEMB1  gene HEMB1  function Encodes a putative 5-aminolevulinate dehydratase involved in chlorophyll biosynthesis.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_function catalytic activity|GO:0003824||IEA  go_function porphobilinogen synthase activity|GO:0004655||IEA  go_function metal ion binding|GO:0046872||IEA  go_process porphyrin biosynthetic process|GO:0006779|8016269|TAS  go_function porphobilinogen synthase activity|GO:0004655||ISS  product HEMB1; catalytic/ metal ion binding / porphobilinogen synthase  note HEMB1; FUNCTIONS IN: porphobilinogen synthase activity, catalytic activity, metal ion binding; INVOLVED IN: porphyrin biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Tetrapyrrole biosynthesis, porphobilinogen synthase (InterPro:IPR001731); BEST Arabidopsis thaliana protein match is: hemb2; catalytic/ metal ion binding / porphobilinogen synthase (TAIR:AT1G44318.1); Has 5088 Blast hits to 5088 proteins in 1237 species: Archae - 100; Bacteria - 2153; Metazoa - 143; Fungi - 105; Plants - 60; Viruses - 0; Other Eukaryotes - 2527 (source: NCBI BLink).  protein_id AT1G69740.1p  transcript_id AT1G69740.1  protein_id AT1G69740.1p  transcript_id AT1G69740.1  
At1g69740	chr1:026232197	0.0	W/26232197-26232502,26232910-26233021,26233106-26233179,26233260-26233328,26233411-26233494,26233587-26233656,26233727-26233782,26233870-26233991,26234069-26234140,26234226-26234307,26234380-26234457,26234546-26234713	AT1G69740.2  CDS  gene_syn HEMB1  gene HEMB1  function Encodes a putative 5-aminolevulinate dehydratase involved in chlorophyll biosynthesis.  go_component chloroplast|GO:0009507|18431481|IDA  go_function catalytic activity|GO:0003824||IEA  go_function porphobilinogen synthase activity|GO:0004655||IEA  go_function metal ion binding|GO:0046872||IEA  go_process porphyrin biosynthetic process|GO:0006779|8016269|TAS  go_function porphobilinogen synthase activity|GO:0004655||ISS  product HEMB1; catalytic/ metal ion binding / porphobilinogen synthase  note HEMB1; FUNCTIONS IN: porphobilinogen synthase activity, catalytic activity, metal ion binding; INVOLVED IN: porphyrin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Tetrapyrrole biosynthesis, porphobilinogen synthase (InterPro:IPR001731); BEST Arabidopsis thaliana protein match is: hemb2; catalytic/ metal ion binding / porphobilinogen synthase (TAIR:AT1G44318.1); Has 5088 Blast hits to 5088 proteins in 1237 species: Archae - 100; Bacteria - 2153; Metazoa - 143; Fungi - 105; Plants - 60; Viruses - 0; Other Eukaryotes - 2527 (source: NCBI BLink).  protein_id AT1G69740.2p  transcript_id AT1G69740.2  protein_id AT1G69740.2p  transcript_id AT1G69740.2  
At1g69750	chr1:026236352	0.0	W/26236352-26236361,26236819-26236907,26236994-26237091,26237217-26237316	AT1G69750.1  CDS  gene_syn T6C23.5, T6C23_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product cox19 family protein  note cox19 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625); BEST Arabidopsis thaliana protein match is: cox19 family protein (TAIR:AT1G66590.1); Has 208 Blast hits to 208 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 66; Fungi - 71; Plants - 29; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT1G69750.1p  transcript_id AT1G69750.1  protein_id AT1G69750.1p  transcript_id AT1G69750.1  
At1g69760	chr1:026240094	0.0	C/26240094-26240627	AT1G69760.1  CDS  gene_syn T6C23.4, T6C23_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26920.1); Has 34 Blast hits to 34 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 6; Plants - 14; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G69760.1p  transcript_id AT1G69760.1  protein_id AT1G69760.1p  transcript_id AT1G69760.1  
At1g69770	chr1:026253304	0.0	C/26253304-26253519,26253137-26253174,26252917-26253019,26252295-26252402,26252089-26252208,26251886-26251985,26251566-26251774,26251410-26251475,26251076-26251333,26250925-26250983,26250776-26250842,26250214-26250543,26250068-26250136,26249912-26249998,26249736-26249823,26249513-26249628,26249302-26249406,26249179-26249222,26249013-26249082,26248756-26248859,26248496-26248658	AT1G69770.1  CDS  gene_syn CMT3, T6C23.3, T6C23_3, chromomethylase 3  gene CMT3  function Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing.  go_component chromatin|GO:0000785||IEA  go_component nucleus|GO:0005634||IEA  go_process DNA methylation|GO:0006306|11459824|IMP  go_process chromatin silencing|GO:0006342|11349138|IGI  go_process zygote asymmetric cytokinesis in the embryo sac|GO:0010069|16531498|IMP  go_process DNA methylation on cytosine within a CNG sequence|GO:0010425|11349138|IMP  go_process negative regulation of gene expression, epigenetic|GO:0045814|11349138|IGI  go_process histone H3-K9 methylation|GO:0051567|17239600|IGI  go_function DNA (cytosine-5-)-methyltransferase activity|GO:0003886|11459824|IMP  product CMT3 (chromomethylase 3); DNA (cytosine-5-)-methyltransferase  note chromomethylase 3 (CMT3); FUNCTIONS IN: DNA (cytosine-5-)-methyltransferase activity; INVOLVED IN: in 6 processes; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C-5 cytosine-specific DNA methylase (InterPro:IPR001525), Chromo domain-like (InterPro:IPR016197), Bromo adjacent region (InterPro:IPR001025), C-5 cytosine-specific DNA methylase, active site (InterPro:IPR018117), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: CMT1 (CHROMOMETHYLASE 1); DNA binding / chromatin binding (TAIR:AT1G80740.1); Has 2748 Blast hits to 2405 proteins in 579 species: Archae - 111; Bacteria - 1374; Metazoa - 200; Fungi - 84; Plants - 213; Viruses - 23; Other Eukaryotes - 743 (source: NCBI BLink).  protein_id AT1G69770.1p  transcript_id AT1G69770.1  protein_id AT1G69770.1p  transcript_id AT1G69770.1  
At1g69780	chr1:026259166	0.0	W/26259166-26259301,26259383-26259765,26260100-26260465	AT1G69780.1  CDS  gene_syn ATHB13, HOMEODOMAIN LEUCINE-ZIPPER PROTEIN ATHB13, T6C23.2, T6C23_2  gene ATHB13  function Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to sucrose stimulus|GO:0009744|11292072|IMP  go_process leaf morphogenesis|GO:0009965|11292072|IMP  go_process cotyledon morphogenesis|GO:0048826|11292072|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11292072|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function sequence-specific DNA binding|GO:0043565|11247607|IDA  product ATHB13; DNA binding / sequence-specific DNA binding / transcription factor  note ATHB13; FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding, DNA binding; INVOLVED IN: cotyledon morphogenesis, regulation of transcription, DNA-dependent, response to sucrose stimulus, leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: AtHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23); DNA binding / transcription factor (TAIR:AT1G26960.1); Has 9714 Blast hits to 9676 proteins in 505 species: Archae - 0; Bacteria - 0; Metazoa - 7931; Fungi - 141; Plants - 1449; Viruses - 5; Other Eukaryotes - 188 (source: NCBI BLink).  protein_id AT1G69780.1p  transcript_id AT1G69780.1  protein_id AT1G69780.1p  transcript_id AT1G69780.1  
At1g69790	chr1:026266838	0.0	W/26266838-26266895,26267074-26267423,26267504-26267639,26267738-26267868,26268330-26268818	AT1G69790.1  CDS  gene_syn T6C23.1, T6C23_1  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT1G26970.1); Has 87300 Blast hits to 86068 proteins in 2779 species: Archae - 58; Bacteria - 7901; Metazoa - 38003; Fungi - 6946; Plants - 19128; Viruses - 386; Other Eukaryotes - 14878 (source: NCBI BLink).  protein_id AT1G69790.1p  transcript_id AT1G69790.1  protein_id AT1G69790.1p  transcript_id AT1G69790.1  
At1g69792	chr1:026269979	0.0	C/26269979-26270078	AT1G69792.1  miRNA  gene_syn MICRORNA 395, MICRORNA395D, MIR395, MIR395D  gene MIR395D  function Encodes a microRNA that targets both APS and AST family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: CUGAAGUGUUUGGGGGAACUC. Predicted targets are ATP sulfurylases.  go_process cellular response to sulfate starvation|GO:0009970|15200956|IEP  go_process gene silencing by miRNA|GO:0035195|15851028|IDA  product MIR395D (MICRORNA395D); miRNA  transcript_id AT1G69792.1  
At1g69795	chr1:026272776	0.0	C/26272776-26272870	AT1G69795.1  miRNA  gene_syn MICRORNA 395, MICRORNA395E, MIR395, MIR395E  gene MIR395E  function Encodes a microRNA that targets both APS and AST family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: CUGAAGUGUUUGGGGGAACUC. Predicted targets are ATP sulfurylases.  go_process cellular response to sulfate starvation|GO:0009970|15200956|IEP  go_process gene silencing by miRNA|GO:0035195|15851028|IDA  product MIR395E (MICRORNA395E); miRNA  transcript_id AT1G69795.1  
At1g69797	chr1:026273858	0.0	W/26273858-26273969	AT1G69797.1  miRNA  gene_syn MICRORNA 395, MICRORNA395F, MIR395, MIR395F  gene MIR395F  function Encodes a microRNA that targets both APS and AST family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: CUGAAGUGUUUGGGGGGACUC. Predicted targets are ATP sulfurylases.  go_process cellular response to sulfate starvation|GO:0009970|15200956|IEP  go_process gene silencing by miRNA|GO:0035195|15851028|IDA  product MIR395F (MICRORNA395F); miRNA  transcript_id AT1G69797.1  
At1g69800	chr1:026275928	0.0	C/26275928-26276105,26275371-26275813,26275025-26275291,26274780-26274952,26274416-26274698	AT1G69800.1  CDS  gene_syn T17F3.17, T17F3_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product CBS domain-containing protein  note CBS domain-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: KING1 (SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1) (TAIR:AT3G48530.1); Has 651 Blast hits to 575 proteins in 170 species: Archae - 84; Bacteria - 115; Metazoa - 158; Fungi - 50; Plants - 104; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink).  protein_id AT1G69800.1p  transcript_id AT1G69800.1  protein_id AT1G69800.1p  transcript_id AT1G69800.1  
At1g69800	chr1:026276278	0.0	C/26276278-26276325,26275928-26276144,26275371-26275813,26275025-26275291,26274780-26274952,26274416-26274698	AT1G69800.2  CDS  gene_syn T17F3.17, T17F3_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product CBS domain-containing protein  note CBS domain-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: KING1 (SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1) (TAIR:AT3G48530.1); Has 654 Blast hits to 575 proteins in 170 species: Archae - 84; Bacteria - 115; Metazoa - 158; Fungi - 50; Plants - 104; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).  protein_id AT1G69800.2p  transcript_id AT1G69800.2  protein_id AT1G69800.2p  transcript_id AT1G69800.2  
At1g69810	chr1:026279051	0.0	C/26279051-26279116,26277988-26278524,26277773-26277886,26277238-26277684	AT1G69810.1  CDS  gene_syn AtWRKY36, T17F3.16, T17F3_16, WRKY36  gene WRKY36  function member of WRKY Transcription Factor; Group II-b  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY36; transcription factor  note WRKY36; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY61; transcription factor (TAIR:AT1G18860.1); Has 2064 Blast hits to 1789 proteins in 147 species: Archae - 0; Bacteria - 9; Metazoa - 40; Fungi - 14; Plants - 1919; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT1G69810.1p  transcript_id AT1G69810.1  protein_id AT1G69810.1p  transcript_id AT1G69810.1  
At1g69818	chr1:026282425	0.0	W/26282425-26282485,26282747-26282907	AT1G69818.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69825.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G69818.1p  transcript_id AT1G69818.1  protein_id AT1G69818.1p  transcript_id AT1G69818.1  
At1g69820	chr1:026284001	0.0	C/26284001-26284134,26283648-26283918,26283433-26283570,26283312-26283344	AT1G69820.1  CDS  gene_syn GAMMA-GLUTAMYL TRANSPEPTIDASE 3, GAMMA-GLUTAMYL TRANSPEPTIDASE 4, GGT3, GGT4, T17F3.15, T17F3_15  gene GGT3  go_function gamma-glutamyltransferase activity|GO:0003840||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function gamma-glutamyltransferase activity|GO:0003840||ISS  product GGT3 (GAMMA-GLUTAMYL TRANSPEPTIDASE 3); gamma-glutamyltransferase  note GAMMA-GLUTAMYL TRANSPEPTIDASE 3 (GGT3); FUNCTIONS IN: gamma-glutamyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Gamma-glutamyltranspeptidase (InterPro:IPR000101); BEST Arabidopsis thaliana protein match is: GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1); gamma-glutamyltransferase/ glutathione gamma-glutamylcysteinyltransferase (TAIR:AT4G39640.2); Has 4647 Blast hits to 4645 proteins in 837 species: Archae - 23; Bacteria - 2202; Metazoa - 507; Fungi - 171; Plants - 50; Viruses - 0; Other Eukaryotes - 1694 (source: NCBI BLink).  protein_id AT1G69820.1p  transcript_id AT1G69820.1  protein_id AT1G69820.1p  transcript_id AT1G69820.1  
At1g69825	chr1:026286496	0.0	W/26286496-26286556,26286769-26286929	AT1G69825.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69818.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G69825.1p  transcript_id AT1G69825.1  protein_id AT1G69825.1p  transcript_id AT1G69825.1  
At1g69828	chr1:026287522	0.0	W/26287522-26287582,26287785-26287948	AT1G69828.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69818.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G69828.1p  transcript_id AT1G69828.1  protein_id AT1G69828.1p  transcript_id AT1G69828.1  
At1g69830	chr1:026292719	0.0	C/26292719-26293003,26292439-26292566,26292288-26292342,26292094-26292207,26291900-26292008,26291366-26291697,26290293-26290936,26289867-26290056,26289566-26289672,26289232-26289481,26289028-26289150,26288774-26288941,26288518-26288676	AT1G69830.1  CDS  gene_syn ALPHA-AMYLASE-LIKE 3, AMY3, ATAMY3, T17F3.14, T17F3_14  gene AMY3  function Encodes a plastid-localized & 945;-amylase. Expression is reduced in the SEX4 mutant. Loss of function mutations show normal diurnal pattern of starch accumulation/degradation. Expression follows circadian rhythms.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast|GO:0009507|15637061|IDA  go_process starch catabolic process|GO:0005983|15862090|TAS  go_process circadian rhythm|GO:0007623|16297066|IEP  go_function alpha-amylase activity|GO:0004556|15637061|IDA  go_function alpha-amylase activity|GO:0004556||ISS  product AMY3 (ALPHA-AMYLASE-LIKE 3); alpha-amylase  note ALPHA-AMYLASE-LIKE 3 (AMY3); FUNCTIONS IN: alpha-amylase activity; INVOLVED IN: circadian rhythm, starch catabolic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic region (InterPro:IPR006047), Alpha-amylase, C-terminal beta-sheet (InterPro:IPR012850); BEST Arabidopsis thaliana protein match is: AMY2 (ALPHA-AMYLASE-LIKE 2); alpha-amylase/ calcium ion binding / catalytic/ cation binding (TAIR:AT1G76130.1); Has 6343 Blast hits to 6315 proteins in 1183 species: Archae - 62; Bacteria - 4253; Metazoa - 614; Fungi - 543; Plants - 350; Viruses - 0; Other Eukaryotes - 521 (source: NCBI BLink).  protein_id AT1G69830.1p  transcript_id AT1G69830.1  protein_id AT1G69830.1p  transcript_id AT1G69830.1  
At1g69840	chr1:026294962	0.0	C/26294962-26295150,26294754-26294874,26294581-26294672,26294381-26294477,26293932-26294293	AT1G69840.1  CDS  gene_syn T17F3.13, T17F3_13  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process biological_process|GO:0008150||ND  product band 7 family protein  note band 7 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, chloroplast, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: band 7 family protein (TAIR:AT5G62740.1); Has 3729 Blast hits to 3728 proteins in 1086 species: Archae - 110; Bacteria - 2212; Metazoa - 272; Fungi - 168; Plants - 160; Viruses - 5; Other Eukaryotes - 802 (source: NCBI BLink).  protein_id AT1G69840.1p  transcript_id AT1G69840.1  protein_id AT1G69840.1p  transcript_id AT1G69840.1  
At1g69840	chr1:026294962	0.0	C/26294962-26295150,26294754-26294874,26294581-26294672,26294381-26294477,26293932-26294293	AT1G69840.2  CDS  gene_syn T17F3.13, T17F3_13  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process biological_process|GO:0008150||ND  product band 7 family protein  note band 7 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, chloroplast, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: band 7 family protein (TAIR:AT5G62740.1); Has 3729 Blast hits to 3728 proteins in 1086 species: Archae - 110; Bacteria - 2212; Metazoa - 272; Fungi - 168; Plants - 160; Viruses - 5; Other Eukaryotes - 802 (source: NCBI BLink).  protein_id AT1G69840.2p  transcript_id AT1G69840.2  protein_id AT1G69840.2p  transcript_id AT1G69840.2  
At1g69840	chr1:026294962	0.0	C/26294962-26295150,26294754-26294874,26294581-26294672,26294381-26294477,26293932-26294293	AT1G69840.3  CDS  gene_syn T17F3.13, T17F3_13  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process biological_process|GO:0008150||ND  product band 7 family protein  note band 7 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: band 7 family protein (TAIR:AT5G62740.1); Has 3729 Blast hits to 3728 proteins in 1086 species: Archae - 110; Bacteria - 2212; Metazoa - 272; Fungi - 168; Plants - 160; Viruses - 5; Other Eukaryotes - 802 (source: NCBI BLink).  protein_id AT1G69840.3p  transcript_id AT1G69840.3  protein_id AT1G69840.3p  transcript_id AT1G69840.3  
At1g69840	chr1:026294962	0.0	C/26294962-26295150,26294754-26294874,26294581-26294672,26294381-26294477,26293932-26294293	AT1G69840.4  CDS  gene_syn T17F3.13, T17F3_13  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process biological_process|GO:0008150||ND  product band 7 family protein  note band 7 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: band 7 family protein (TAIR:AT5G62740.1); Has 3729 Blast hits to 3728 proteins in 1086 species: Archae - 110; Bacteria - 2212; Metazoa - 272; Fungi - 168; Plants - 160; Viruses - 5; Other Eukaryotes - 802 (source: NCBI BLink).  protein_id AT1G69840.4p  transcript_id AT1G69840.4  protein_id AT1G69840.4p  transcript_id AT1G69840.4  
At1g69840	chr1:026294962	0.0	C/26294962-26295150,26294754-26294874,26294581-26294672,26294381-26294477,26293932-26294293	AT1G69840.5  CDS  gene_syn T17F3.13, T17F3_13  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process biological_process|GO:0008150||ND  product band 7 family protein  note band 7 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: band 7 family protein (TAIR:AT5G62740.1); Has 3729 Blast hits to 3728 proteins in 1086 species: Archae - 110; Bacteria - 2212; Metazoa - 272; Fungi - 168; Plants - 160; Viruses - 5; Other Eukaryotes - 802 (source: NCBI BLink).  protein_id AT1G69840.5p  transcript_id AT1G69840.5  protein_id AT1G69840.5p  transcript_id AT1G69840.5  
At1g69840	chr1:026294962	0.0	C/26294962-26295150,26294754-26294874,26294581-26294672,26294381-26294477,26293932-26294293	AT1G69840.6  CDS  gene_syn T17F3.13, T17F3_13  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process biological_process|GO:0008150||ND  product band 7 family protein  note band 7 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: band 7 family protein (TAIR:AT5G62740.1); Has 3729 Blast hits to 3728 proteins in 1086 species: Archae - 110; Bacteria - 2212; Metazoa - 272; Fungi - 168; Plants - 160; Viruses - 5; Other Eukaryotes - 802 (source: NCBI BLink).  protein_id AT1G69840.6p  transcript_id AT1G69840.6  protein_id AT1G69840.6p  transcript_id AT1G69840.6  
At1g69850	chr1:026300405	0.0	C/26300405-26300407,26300169-26300274,26299816-26300033,26298022-26298450,26296945-26297946	AT1G69850.1  CDS  gene_syn ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1:2, ATNRT1:2, NTL1, T17F3.12, T17F3_12  gene ATNRT1:2  function Encodes an inducible component of low-affinity nitrate uptake. mRNA found primarily in root hairs and the epidermis of roots.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|11152613|ISS  go_process response to nematode|GO:0009624|16478044|IEP  go_function transporter activity|GO:0005215||ISS  go_function calcium ion binding|GO:0005509||ISS  product ATNRT1:2 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1:2); calcium ion binding / transporter  note ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1:2 (ATNRT1:2); FUNCTIONS IN: transporter activity, calcium ion binding; INVOLVED IN: response to nematode; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter, putative (TAIR:AT1G27040.1); Has 3577 Blast hits to 3435 proteins in 625 species: Archae - 0; Bacteria - 1298; Metazoa - 452; Fungi - 256; Plants - 1142; Viruses - 0; Other Eukaryotes - 429 (source: NCBI BLink).  protein_id AT1G69850.1p  transcript_id AT1G69850.1  protein_id AT1G69850.1p  transcript_id AT1G69850.1  
At1g69860	chr1:026309628	0.0	W/26309628-26309715,26309835-26310052,26310399-26310958,26311373-26312174	AT1G69860.1  CDS  gene_syn T17F3.11, T17F3_11  go_component membrane|GO:0016020||IEA  go_process oligopeptide transport|GO:0006857||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT1G69870.1); Has 3193 Blast hits to 3136 proteins in 601 species: Archae - 0; Bacteria - 1224; Metazoa - 430; Fungi - 246; Plants - 1110; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink).  protein_id AT1G69860.1p  transcript_id AT1G69860.1  protein_id AT1G69860.1p  transcript_id AT1G69860.1  
At1g69870	chr1:026316208	0.0	W/26316208-26316394,26316960-26317177,26318519-26319084,26319206-26320097	AT1G69870.1  CDS  gene_syn T17F3.10, T17F3_10  go_component plasma membrane|GO:0005886|14506206|IDA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_process response to salt stress|GO:0009651|11351099|IEP  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: response to salt stress, oligopeptide transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: NRT1.6 (NITRATE TRANSPORTER 1.6); low affinity nitrate transmembrane transporter/ transporter (TAIR:AT1G27080.1); Has 2739 Blast hits to 2630 proteins in 509 species: Archae - 0; Bacteria - 693; Metazoa - 468; Fungi - 272; Plants - 1130; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).  protein_id AT1G69870.1p  transcript_id AT1G69870.1  protein_id AT1G69870.1p  transcript_id AT1G69870.1  
At1g69880	chr1:026321540	0.0	W/26321540-26321722,26322416-26322538,26322654-26322794	AT1G69880.1  CDS  gene_syn ATH8, T17F3.9, T17F3_9, thioredoxin H-type 8  gene ATH8  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process cell redox homeostasis|GO:0045454||IEA  go_component cellular_component|GO:0005575||ND  product ATH8 (thioredoxin H-type 8)  note thioredoxin H-type 8 (ATH8); INVOLVED IN: N-terminal protein myristoylation, cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336), Thioredoxin, conserved site (InterPro:IPR017937); BEST Arabidopsis thaliana protein match is: ATH7 (thioredoxin H-type 7) (TAIR:AT1G59730.1); Has 11530 Blast hits to 11319 proteins in 1689 species: Archae - 145; Bacteria - 5201; Metazoa - 1497; Fungi - 572; Plants - 998; Viruses - 8; Other Eukaryotes - 3109 (source: NCBI BLink).  protein_id AT1G69880.1p  transcript_id AT1G69880.1  protein_id AT1G69880.1p  transcript_id AT1G69880.1  
At1g69890	chr1:026323967	0.0	C/26323967-26324527,26323426-26323704	AT1G69890.1  CDS  gene_syn T17F3.8, T17F3_8  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF569 (InterPro:IPR007679), Actin_cross-linking (InterPro:IPR008999); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27100.1); Has 121 Blast hits to 109 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G69890.1p  transcript_id AT1G69890.1  protein_id AT1G69890.1p  transcript_id AT1G69890.1  
At1g69900	chr1:026327139	0.0	C/26327139-26327816,26326520-26327035	AT1G69900.1  CDS  gene_syn T17F3.7, T17F3_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF569 (InterPro:IPR007679), Actin_cross-linking (InterPro:IPR008999); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27100.1); Has 142 Blast hits to 77 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 142; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G69900.1p  transcript_id AT1G69900.1  protein_id AT1G69900.1p  transcript_id AT1G69900.1  
At1g69910	chr1:026330166	0.0	W/26330166-26332076	AT1G69910.1  CDS  gene_syn T17F3.6, T17F3_6  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase, active site (InterPro:IPR008266), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT1G18390.2); Has 76465 Blast hits to 75766 proteins in 2562 species: Archae - 38; Bacteria - 6824; Metazoa - 33440; Fungi - 5487; Plants - 18018; Viruses - 304; Other Eukaryotes - 12354 (source: NCBI BLink).  protein_id AT1G69910.1p  transcript_id AT1G69910.1  protein_id AT1G69910.1p  transcript_id AT1G69910.1  
At1g69920	chr1:026335127	0.0	C/26335127-26335537,26334395-26334748	AT1G69920.1  CDS  gene_syn ATGSTU12, GLUTATHIONE S-TRANSFERASE TAU 12, T17F3.5, T17F3_5  gene ATGSTU12  function Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTU12 (GLUTATHIONE S-TRANSFERASE TAU 12); glutathione transferase  note GLUTATHIONE S-TRANSFERASE TAU 12 (ATGSTU12); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Thioredoxin-like fold (InterPro:IPR012336), Glutathione S-transferase, N-terminal (InterPro:IPR004045); BEST Arabidopsis thaliana protein match is: ATGSTU13 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 13); glutathione transferase (TAIR:AT1G27130.1); Has 2479 Blast hits to 2476 proteins in 448 species: Archae - 0; Bacteria - 932; Metazoa - 209; Fungi - 57; Plants - 1056; Viruses - 0; Other Eukaryotes - 225 (source: NCBI BLink).  protein_id AT1G69920.1p  transcript_id AT1G69920.1  protein_id AT1G69920.1p  transcript_id AT1G69920.1  
At1g69930	chr1:026338352	0.0	C/26338352-26338690,26337735-26338100	AT1G69930.1  CDS  gene_syn ATGSTU11, GLUTATHIONE S-TRANSFERASE TAU 11, T17F3.4, T17F3_4  gene ATGSTU11  function Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTU11 (GLUTATHIONE S-TRANSFERASE TAU 11); glutathione transferase  note GLUTATHIONE S-TRANSFERASE TAU 11 (ATGSTU11); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTU13 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 13); glutathione transferase (TAIR:AT1G27130.1); Has 2521 Blast hits to 2518 proteins in 486 species: Archae - 0; Bacteria - 1021; Metazoa - 146; Fungi - 64; Plants - 1059; Viruses - 0; Other Eukaryotes - 231 (source: NCBI BLink).  protein_id AT1G69930.1p  transcript_id AT1G69930.1  protein_id AT1G69930.1p  transcript_id AT1G69930.1  
At1g69935	chr1:026342915	0.0	C/26342915-26343082,26342610-26342834,26342424-26342489,26342072-26342191	AT1G69935.1  CDS  gene_syn SHORT HYPOCOTYL IN WHITE LIGHT1, SHW1  gene SHW1  function Encodes a nuclear localized serine-arginine-aspartate-rich protein that acts as a negative regulator of photomorphogenesis.  go_component nucleus|GO:0005634|18375596|IDA  go_process negative regulation of photomorphogenesis|GO:0010100|18375596|IMP  go_function molecular_function|GO:0003674||ND  product SHW1 (SHORT HYPOCOTYL IN WHITE LIGHT1)  note SHORT HYPOCOTYL IN WHITE LIGHT1 (SHW1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: negative regulation of photomorphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G33780.1); Has 19 Blast hits to 19 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G69935.1p  transcript_id AT1G69935.1  protein_id AT1G69935.1p  transcript_id AT1G69935.1  
At1g69940	chr1:026344768	0.0	C/26344768-26344971,26344402-26344677,26344111-26344317,26343800-26344038,26343549-26343708	AT1G69940.1  CDS  gene_syn ATPPME1, PPME1, T17F3.3, T17F3_3  gene PPME1  function Encodes a protein with pectin methylesterase activity. The protein expression was shown to be highly restricted to the pollen grain (no detection in any other tissues or in the pollen grains  surrounding cells of the anthers.  go_component endoplasmic reticulum|GO:0005783|16564517|NAS  go_component Golgi apparatus|GO:0005794|16564517|NAS  go_component plant-type cell wall|GO:0009505|17971035|IDA  go_component plant-type cell wall|GO:0009505||ISS  go_process pollen tube growth|GO:0009860|16564517|IMP  go_process pollen tube growth|GO:0009860|17971035|IDA  go_function pectinesterase activity|GO:0030599|16564517|IMP  go_function pectinesterase activity|GO:0030599||ISS  product PPME1; pectinesterase  note PPME1; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: pollen tube growth; LOCATED IN: endoplasmic reticulum, Golgi apparatus, plant-type cell wall; EXPRESSED IN: male gametophyte, flower, pollen tube; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT5G07410.1); Has 1209 Blast hits to 1175 proteins in 173 species: Archae - 0; Bacteria - 246; Metazoa - 1; Fungi - 132; Plants - 830; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G69940.1p  transcript_id AT1G69940.1  protein_id AT1G69940.1p  transcript_id AT1G69940.1  
At1g69950	chr1:026346488	0.0	W/26346488-26348691	AT1G69950.1  mRNA_TE_gene  pseudo  gene_syn T17F3.2, T17F3_2  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 1.0e-71 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays)  
At1g69960	chr1:026350256	0.0	C/26350256-26350511,26349713-26349827,26349518-26349626,26349343-26349420,26348892-26349257	AT1G69960.1  CDS  gene_syn F20P5.30, F20P5_30, PP2A, SERINE/THREONINE PROTEIN PHOSPHATASE 2A, TYPE 2A SERINE/THREONINE PROTEIN PHOSPHATASE  gene PP2A  function type 2A serine/threonine protein phosphatase (PP2A) mRNA,  go_component cellular_component|GO:0005575||ND  go_process auxin polar transport|GO:0009926|8641277|IMP  go_function protein serine/threonine phosphatase activity|GO:0004722|8382968|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A); protein serine/threonine phosphatase  note SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A); FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: auxin polar transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: PP2A-1; protein serine/threonine phosphatase (TAIR:AT1G59830.1); Has 5321 Blast hits to 5193 proteins in 377 species: Archae - 49; Bacteria - 170; Metazoa - 2049; Fungi - 931; Plants - 602; Viruses - 3; Other Eukaryotes - 1517 (source: NCBI BLink).  protein_id AT1G69960.1p  transcript_id AT1G69960.1  protein_id AT1G69960.1p  transcript_id AT1G69960.1  
At1g69970	chr1:026353900	0.0	C/26353900-26354256	AT1G69970.1  CDS  gene_syn CLAVATA3/ESR-RELATED 26, CLE26, F20P5.29, F20P5_29  gene CLE26  function Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can not replace CLV3 function in vivo.  go_component apoplast|GO:0048046|11457943|RCA  go_process signal transduction|GO:0007165||ISS  go_function receptor binding|GO:0005102||ISS  go_function protein binding|GO:0005515|11457943|ISS  product CLE26 (CLAVATA3/ESR-RELATED 26); protein binding / receptor binding  note CLAVATA3/ESR-RELATED 26 (CLE26); FUNCTIONS IN: protein binding, receptor binding; INVOLVED IN: signal transduction; LOCATED IN: apoplast; EXPRESSED IN: hypocotyl; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G69970.1p  transcript_id AT1G69970.1  protein_id AT1G69970.1p  transcript_id AT1G69970.1  
At1g69970	chr1:026353988	0.0	C/26353988-26354256,26353079-26353118	AT1G69970.2  CDS  gene_syn CLAVATA3/ESR-RELATED 26, CLE26, F20P5.29, F20P5_29  gene CLE26  function Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can not replace CLV3 function in vivo.  go_component apoplast|GO:0048046|11457943|RCA  go_process signal transduction|GO:0007165||ISS  go_function receptor binding|GO:0005102||ISS  go_function protein binding|GO:0005515|11457943|ISS  product CLE26 (CLAVATA3/ESR-RELATED 26); protein binding / receptor binding  note CLAVATA3/ESR-RELATED 26 (CLE26); FUNCTIONS IN: protein binding, receptor binding; INVOLVED IN: signal transduction; LOCATED IN: apoplast; EXPRESSED IN: hypocotyl; Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G69970.2p  transcript_id AT1G69970.2  protein_id AT1G69970.2p  transcript_id AT1G69970.2  
At1g69980	chr1:026357550	0.0	C/26357550-26357647,26357324-26357456,26356761-26357027,26356559-26356678	AT1G69980.1  CDS  gene_syn F20P5.28, F20P5_28  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 15 Blast hits to 14 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G69980.1p  transcript_id AT1G69980.1  protein_id AT1G69980.1p  transcript_id AT1G69980.1  
At1g69981	chr1:026358097	0.0	C/26358097-26358402	AT1G69981.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G70020  
At1g69990	chr1:026360235	0.0	C/26360235-26362010	AT1G69990.1  CDS  gene_syn F20P5.27, F20P5_27  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT1G27190.1); Has 70777 Blast hits to 44170 proteins in 1431 species: Archae - 40; Bacteria - 3927; Metazoa - 16996; Fungi - 1620; Plants - 41536; Viruses - 145; Other Eukaryotes - 6513 (source: NCBI BLink).  protein_id AT1G69990.1p  transcript_id AT1G69990.1  protein_id AT1G69990.1p  transcript_id AT1G69990.1  
At1g70000	chr1:026364347	0.0	C/26364347-26364635,26364046-26364254,26363674-26363961	AT1G70000.1  CDS  gene_syn F20P5.26, F20P5_26  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product DNA-binding family protein  note DNA-binding family protein; FUNCTIONS IN: transcription factor activity, nucleic acid binding; INVOLVED IN: in 9 processes; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Zinc finger, CCHC-type (InterPro:IPR001878), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT5G47390.1); Has 770 Blast hits to 768 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 701; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT1G70000.1p  transcript_id AT1G70000.1  protein_id AT1G70000.1p  transcript_id AT1G70000.1  
At1g70010	chr1:026367177	0.0	W/26367177-26371457	AT1G70010.1  mRNA_TE_gene  pseudo  gene_syn F20P5.25, F20P5_25  note Transposable element gene, copia-like retrotransposon family, has a 3.2e-289 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At1g70020	chr1:026377370	0.0	W/26377370-26377767,26377874-26378153	AT1G70020.1  CDS  gene_syn F20P5.24, F20P5_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1163 (InterPro:IPR009544); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39330.1); Has 20 Blast hits to 20 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G70020.1p  transcript_id AT1G70020.1  protein_id AT1G70020.1p  transcript_id AT1G70020.1  
At1g70030	chr1:026379218	0.0	W/26379218-26379348,26379443-26379626,26379943-26380038,26380120-26380191	AT1G70030.1  CDS  gene_syn F20P5.23, F20P5_23  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function molecular_function|GO:0003674||ND  product paired amphipathic helix repeat-containing protein  note paired amphipathic helix repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SNL4 (SIN3-LIKE 4) (TAIR:AT1G70060.1); Has 976 Blast hits to 425 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 480; Fungi - 333; Plants - 137; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G70030.1p  transcript_id AT1G70030.1  protein_id AT1G70030.1p  transcript_id AT1G70030.1  
At1g70040	chr1:026381233	0.0	W/26381233-26381537,26381632-26381908	AT1G70040.1  CDS  gene_syn F20P5.22, F20P5_22  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1163 (InterPro:IPR009544); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70120.1); Has 19 Blast hits to 19 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G70040.1p  transcript_id AT1G70040.1  protein_id AT1G70040.1p  transcript_id AT1G70040.1  
At1g70050	chr1:026382154	0.0	C/26382154-26382225	AT1G70050.1  tRNA  gene_syn 50885.TRNA-PRO-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: AGG)  transcript_id AT1G70050.1  
At1g70060	chr1:026383789	0.0	W/26383789-26383928,26384007-26384196,26384279-26384377,26384469-26384630,26384712-26385048,26385113-26385243,26385361-26385436,26385527-26385604,26385646-26385866,26385963-26386117,26386204-26386331,26386420-26386674,26386763-26387401,26387458-26387579,26387687-26388220,26388305-26388405,26388497-26388635,26388719-26388871,26388961-26389127,26389210-26389309,26389407-26389568	AT1G70060.1  CDS  gene_syn F20P5.21, F20P5_21, SIN3-LIKE 4, SNL4  gene SNL4  function Encodes a homolog of the transcriptional repressor SIN3 (AT1G24190).  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  product SNL4 (SIN3-LIKE 4)  note SIN3-LIKE 4 (SNL4); INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SNL3 (SIN3-LIKE 3); transcription repressor (TAIR:AT1G24190.1); Has 1921 Blast hits to 818 proteins in 167 species: Archae - 2; Bacteria - 31; Metazoa - 926; Fungi - 559; Plants - 197; Viruses - 14; Other Eukaryotes - 192 (source: NCBI BLink).  protein_id AT1G70060.1p  transcript_id AT1G70060.1  protein_id AT1G70060.1p  transcript_id AT1G70060.1  
At1g70070	chr1:026393382	0.0	C/26393382-26394148,26393178-26393286,26392997-26393083,26392662-26392780,26392388-26392568,26390016-26392268	AT1G70070.1  CDS  gene_syn EMB25, EMBRYO DEFECTIVE 25, F20P5.20, F20P5_20, INCREASED SIZE EXCLUSION LIMIT 2, ISE2, PDE317, PIGMENT DEFECTIVE 317  gene EMB25  function Allelic to ISE2(increased size exclusion limit of plasmodesmata 2). Mutants maintain dilated plasmodesmata at the embryonic torpedo stage.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component stress granule|GO:0010494|17601829|IDA  go_process embryonic development ending in seed dormancy|GO:0009793|11874921|IMP  go_process plasmodesmata-mediated intercellular transport|GO:0010497|11874921|IMP  go_process plasmodesmata-mediated intercellular transport|GO:0010497|17601829|NAS  go_process posttranscriptional gene silencing|GO:0016441|17601829|IMP  go_function RNA helicase activity|GO:0003724|17601829|ISS  go_function ATP-dependent helicase activity|GO:0008026||ISS  product EMB25 (EMBRYO DEFECTIVE 25); ATP-dependent helicase/ RNA helicase  note EMBRYO DEFECTIVE 25 (EMB25); FUNCTIONS IN: RNA helicase activity, ATP-dependent helicase activity; INVOLVED IN: embryonic development ending in seed dormancy, plasmodesmata-mediated intercellular transport, posttranscriptional gene silencing; LOCATED IN: stress granule, chloroplast stroma, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DSH, C-terminal (InterPro:IPR012961), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP binding / ATP-dependent helicase/ helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding (TAIR:AT3G46960.1); Has 19657 Blast hits to 10174 proteins in 882 species: Archae - 628; Bacteria - 2650; Metazoa - 7327; Fungi - 2154; Plants - 641; Viruses - 316; Other Eukaryotes - 5941 (source: NCBI BLink).  protein_id AT1G70070.1p  transcript_id AT1G70070.1  protein_id AT1G70070.1p  transcript_id AT1G70070.1  
At1g70080	chr1:026397302	0.0	C/26397302-26397565,26396923-26397202,26396367-26396751,26396065-26396286,26395691-26395829,26395155-26395403,26394669-26394965	AT1G70080.1  CDS  gene_syn F20P5.19, F20P5_19  go_process metabolic process|GO:0008152||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function lyase activity|GO:0016829||IEA  product terpene synthase/cyclase family protein  note terpene synthase/cyclase family protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase/cyclase family protein (TAIR:AT3G14520.1); Has 1100 Blast hits to 1085 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1097; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G70080.1p  transcript_id AT1G70080.1  protein_id AT1G70080.1p  transcript_id AT1G70080.1  
At1g70090	chr1:026400927	0.0	W/26400927-26402099	AT1G70090.1  CDS  gene_syn F20P5.18, F20P5_18, GALACTURONOSYLTRANSFERASE-LIKE 9, GATL9, GLUCOSYL TRANSFERASE FAMILY 8, LGT8  gene LGT8  function Encodes a protein with putative galacturonosyltransferase activity.  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS  product LGT8 (GLUCOSYL TRANSFERASE FAMILY 8); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note GLUCOSYL TRANSFERASE FAMILY 8 (LGT8); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: LGT9; polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT1G24170.1); Has 1119 Blast hits to 1111 proteins in 231 species: Archae - 0; Bacteria - 434; Metazoa - 188; Fungi - 2; Plants - 423; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT1G70090.1p  transcript_id AT1G70090.1  protein_id AT1G70090.1p  transcript_id AT1G70090.1  
At1g70090	chr1:026400927	0.0	W/26400927-26402099	AT1G70090.2  CDS  gene_syn F20P5.18, F20P5_18, GALACTURONOSYLTRANSFERASE-LIKE 9, GATL9, GLUCOSYL TRANSFERASE FAMILY 8, LGT8  gene LGT8  function Encodes a protein with putative galacturonosyltransferase activity.  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS  product LGT8 (GLUCOSYL TRANSFERASE FAMILY 8); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note GLUCOSYL TRANSFERASE FAMILY 8 (LGT8); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: LGT9; polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT1G24170.1); Has 1119 Blast hits to 1111 proteins in 231 species: Archae - 0; Bacteria - 434; Metazoa - 188; Fungi - 2; Plants - 423; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT1G70090.2p  transcript_id AT1G70090.2  protein_id AT1G70090.2p  transcript_id AT1G70090.2  
At1g70100	chr1:026403736	0.0	W/26403736-26403777,26403937-26404653,26404726-26405163,26405252-26405310,26405397-26405496,26405598-26405654,26405731-26405832	AT1G70100.3  CDS  gene_syn F20P5.17, F20P5_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24160.1); Has 2951 Blast hits to 2288 proteins in 252 species: Archae - 9; Bacteria - 384; Metazoa - 1294; Fungi - 220; Plants - 140; Viruses - 41; Other Eukaryotes - 863 (source: NCBI BLink).  protein_id AT1G70100.3p  transcript_id AT1G70100.3  protein_id AT1G70100.3p  transcript_id AT1G70100.3  
At1g70100	chr1:026403736	0.0	W/26403736-26403777,26403937-26404653,26404726-26405163,26405252-26405310,26405397-26405496,26405598-26405654,26405735-26405770	AT1G70100.4  CDS  gene_syn F20P5.17, F20P5_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24160.1); Has 2760 Blast hits to 2129 proteins in 250 species: Archae - 9; Bacteria - 384; Metazoa - 1180; Fungi - 217; Plants - 141; Viruses - 41; Other Eukaryotes - 788 (source: NCBI BLink).  protein_id AT1G70100.4p  transcript_id AT1G70100.4  protein_id AT1G70100.4p  transcript_id AT1G70100.4  
At1g70100	chr1:026403736	0.0	W/26403736-26403777,26403937-26404653,26404726-26405163,26405252-26405310,26405397-26405544	AT1G70100.1  CDS  gene_syn F20P5.17, F20P5_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24160.1); Has 2504 Blast hits to 1940 proteins in 240 species: Archae - 7; Bacteria - 399; Metazoa - 992; Fungi - 201; Plants - 130; Viruses - 37; Other Eukaryotes - 738 (source: NCBI BLink).  protein_id AT1G70100.1p  transcript_id AT1G70100.1  protein_id AT1G70100.1p  transcript_id AT1G70100.1  
At1g70100	chr1:026403736	0.0	W/26403736-26403777,26403937-26404653,26404726-26405163,26405252-26405310,26405397-26405544	AT1G70100.2  CDS  gene_syn F20P5.17, F20P5_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24160.1); Has 2504 Blast hits to 1940 proteins in 240 species: Archae - 7; Bacteria - 399; Metazoa - 992; Fungi - 201; Plants - 130; Viruses - 37; Other Eukaryotes - 738 (source: NCBI BLink).  protein_id AT1G70100.2p  transcript_id AT1G70100.2  protein_id AT1G70100.2p  transcript_id AT1G70100.2  
At1g70110	chr1:026406805	0.0	C/26406805-26408323,26406238-26406719	AT1G70110.1  CDS  gene_syn F20P5.16, F20P5_16  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product lectin protein kinase family protein  note lectin protein kinase family protein; FUNCTIONS IN: carbohydrate binding, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin protein kinase family protein (TAIR:AT4G29050.1); Has 91391 Blast hits to 90240 proteins in 3394 species: Archae - 63; Bacteria - 8095; Metazoa - 39364; Fungi - 7417; Plants - 20307; Viruses - 431; Other Eukaryotes - 15714 (source: NCBI BLink).  protein_id AT1G70110.1p  transcript_id AT1G70110.1  protein_id AT1G70110.1p  transcript_id AT1G70110.1  
At1g70120	chr1:026408921	0.0	W/26408921-26409234,26409330-26409597	AT1G70120.1  CDS  gene_syn F20P5.34, F20P5_34  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1163 (InterPro:IPR009544); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70040.1); Has 20 Blast hits to 20 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G70120.1p  transcript_id AT1G70120.1  protein_id AT1G70120.1p  transcript_id AT1G70120.1  
At1g70130	chr1:026410313	0.0	C/26410313-26411801,26409743-26410224	AT1G70130.1  CDS  gene_syn F20P5.15, F20P5_15  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product lectin protein kinase, putative  note lectin protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin protein kinase family protein (TAIR:AT4G29050.1); Has 88457 Blast hits to 87386 proteins in 3402 species: Archae - 65; Bacteria - 7997; Metazoa - 38100; Fungi - 7209; Plants - 19431; Viruses - 411; Other Eukaryotes - 15244 (source: NCBI BLink).  protein_id AT1G70130.1p  transcript_id AT1G70130.1  protein_id AT1G70130.1p  transcript_id AT1G70130.1  
At1g70140	chr1:026414051	0.0	C/26414051-26415048,26412688-26413972	AT1G70140.1  CDS  gene_syn ATFH8, F20P5.14, F20P5_14, formin 8  gene ATFH8  function Encodes a group I formin. Binds to F-actin barbed ends. Has severing actin filaments activity. Binds profilin. Involved in the initiation and tip growth of root hairs through regulation of actin cytoskeleton.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cell-cell junction|GO:0005911|16313636|IDA  go_process cell tip growth|GO:0009932|15923338|IMP  go_process actin nucleation|GO:0045010|15923338|IDA  go_function actin binding|GO:0003779|12417149|ISS  go_function actin binding|GO:0003779|15256004|ISS  go_function actin binding|GO:0003779||ISS  go_function profilin binding|GO:0005522|15923338|IDA  go_function actin filament binding|GO:0051015|15923338|IDA  product ATFH8 (formin 8); actin binding / actin filament binding / profilin binding  note formin 8 (ATFH8); FUNCTIONS IN: actin binding, actin filament binding, profilin binding; INVOLVED IN: actin nucleation, cell tip growth; LOCATED IN: cell-cell junction, plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding FH2 and DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: FH4 (FORMIN HOMOLOGUE 4); actin binding / protein binding (TAIR:AT1G24150.1); Has 20507 Blast hits to 10748 proteins in 688 species: Archae - 31; Bacteria - 2229; Metazoa - 7351; Fungi - 2141; Plants - 5369; Viruses - 1000; Other Eukaryotes - 2386 (source: NCBI BLink).  protein_id AT1G70140.1p  transcript_id AT1G70140.1  protein_id AT1G70140.1p  transcript_id AT1G70140.1  
At1g70150	chr1:026416898	0.0	W/26416898-26416999,26417137-26417250,26417348-26417454,26417549-26417598,26417680-26417817,26417901-26417966,26418180-26418288,26418504-26418675,26418810-26418884,26418987-26419100,26419429-26419521	AT1G70150.1  CDS  gene_syn F20P5.13, F20P5_13  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893); Has 104 Blast hits to 103 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 12; Plants - 36; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G70150.1p  transcript_id AT1G70150.1  protein_id AT1G70150.1p  transcript_id AT1G70150.1  
At1g70160	chr1:026420159	0.0	W/26420159-26420473,26420701-26420841,26420927-26421292,26421359-26421601,26421685-26421777,26421849-26422049,26422133-26422345	AT1G70160.1  CDS  gene_syn F20P5.12, F20P5_12  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27020.1); Has 70 Blast hits to 70 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G70160.1p  transcript_id AT1G70160.1  protein_id AT1G70160.1p  transcript_id AT1G70160.1  
At1g70170	chr1:026424005	0.0	W/26424005-26425141	AT1G70170.1  CDS  gene_syn F20P5.11, F20P5_11, MATRIX METALLOPROTEINASE, MMP  gene MMP  function mutant has Late flowering; Early senescence; Matrix Metalloproteinase  go_process proteolysis|GO:0006508||IEA  go_process metabolic process|GO:0008152||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_function metallopeptidase activity|GO:0008237||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process proteolysis|GO:0006508||ISS  go_function metalloendopeptidase activity|GO:0004222||ISS  product MMP (MATRIX METALLOPROTEINASE); metalloendopeptidase/ metallopeptidase  note MATRIX METALLOPROTEINASE (MMP); FUNCTIONS IN: metallopeptidase activity, metalloendopeptidase activity; INVOLVED IN: proteolysis, metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase M10A and M12B, matrixin and adamalysin (InterPro:IPR001818), Peptidoglycan binding-like (InterPro:IPR002477), Peptidase, metallopeptidases (InterPro:IPR006026); BEST Arabidopsis thaliana protein match is: matrixin family protein (TAIR:AT1G24140.1); Has 2186 Blast hits to 2007 proteins in 162 species: Archae - 2; Bacteria - 64; Metazoa - 1900; Fungi - 2; Plants - 82; Viruses - 39; Other Eukaryotes - 97 (source: NCBI BLink).  protein_id AT1G70170.1p  transcript_id AT1G70170.1  protein_id AT1G70170.1p  transcript_id AT1G70170.1  
At1g70180	chr1:026426768	0.0	W/26426768-26426824,26426991-26427127,26427390-26427421,26427496-26428457,26428660-26428740,26428884-26428946,26429047-26429097	AT1G70180.2  CDS  gene_syn F20P5.10, F20P5_10  product sterile alpha motif (SAM) domain-containing protein  note sterile alpha motif (SAM) domain-containing protein; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Sterile alpha motif-type (InterPro:IPR013761), Sterile alpha motif SAM (InterPro:IPR001660), Sterile alpha motif homology (InterPro:IPR010993); BEST Arabidopsis thaliana protein match is: sterile alpha motif (SAM) domain-containing protein (TAIR:AT3G07170.1); Has 5915 Blast hits to 3765 proteins in 313 species: Archae - 0; Bacteria - 300; Metazoa - 2497; Fungi - 798; Plants - 515; Viruses - 145; Other Eukaryotes - 1660 (source: NCBI BLink).  protein_id AT1G70180.2p  transcript_id AT1G70180.2  protein_id AT1G70180.2p  transcript_id AT1G70180.2  
At1g70180	chr1:026426768	0.0	W/26426768-26426824,26426991-26427127,26427390-26427421,26427496-26428457,26428660-26428740,26428884-26428985	AT1G70180.1  CDS  gene_syn F20P5.10, F20P5_10  product sterile alpha motif (SAM) domain-containing protein  note sterile alpha motif (SAM) domain-containing protein; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Sterile alpha motif SAM (InterPro:IPR001660), Sterile alpha motif homology (InterPro:IPR010993); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31870.2); Has 5715 Blast hits to 3552 proteins in 308 species: Archae - 0; Bacteria - 289; Metazoa - 2326; Fungi - 800; Plants - 497; Viruses - 145; Other Eukaryotes - 1658 (source: NCBI BLink).  protein_id AT1G70180.1p  transcript_id AT1G70180.1  protein_id AT1G70180.1p  transcript_id AT1G70180.1  
At1g70185	chr1:026429733	0.0	W/26429733-26430069	AT1G70185.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G70185.1  
At1g70190	chr1:026430616	0.0	W/26430616-26431242	AT1G70190.1  CDS  gene_syn F20P5.9, F20P5_9  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component large ribosomal subunit|GO:0015934||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L12 family protein  note ribosomal protein L12 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: mitochondrion, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L12, chloroplast (InterPro:IPR015608), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719), Ribosomal protein L7/L12, oligomerisation (InterPro:IPR008932), Ribosomal protein L7/L12, C-terminal (InterPro:IPR013823); BEST Arabidopsis thaliana protein match is: ribosomal protein L12 family protein (TAIR:AT4G37660.1); Has 5742 Blast hits to 5742 proteins in 1557 species: Archae - 0; Bacteria - 3189; Metazoa - 133; Fungi - 84; Plants - 174; Viruses - 0; Other Eukaryotes - 2162 (source: NCBI BLink).  protein_id AT1G70190.1p  transcript_id AT1G70190.1  protein_id AT1G70190.1p  transcript_id AT1G70190.1  
At1g70200	chr1:026433817	0.0	C/26433817-26434351,26433534-26433741,26432683-26433468,26432514-26432601	AT1G70200.1  CDS  gene_syn F20P5.8, F20P5_8  go_component chloroplast|GO:0009507|18431481|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_function nucleic acid binding|GO:0003676||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: nucleic acid binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504); Has 4700 Blast hits to 3391 proteins in 312 species: Archae - 11; Bacteria - 235; Metazoa - 1905; Fungi - 438; Plants - 166; Viruses - 63; Other Eukaryotes - 1882 (source: NCBI BLink).  protein_id AT1G70200.1p  transcript_id AT1G70200.1  protein_id AT1G70200.1p  transcript_id AT1G70200.1  
At1g70209	chr1:026439653	0.0	C/26439653-26439796	AT1G70209.1  CDS  go_component mitochondrion|GO:0005739||IEA  product unknown protein  note unknown protein; LOCATED IN: mitochondrion; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G70209.1p  transcript_id AT1G70209.1  protein_id AT1G70209.1p  transcript_id AT1G70209.1  
At1g70210	chr1:026440015	0.0	W/26440015-26440287,26440440-26440526,26441053-26441151,26441247-26441448,26441538-26441674,26441759-26441980	AT1G70210.1  CDS  gene_syn CYCD1;1, CYCLIN D1;1, F20P5.7, F20P5_7  gene CYCD1;1  function Encodes a D-type cyclin that physically interacts with CDC2A. Its expression is upregulated early during germination.  go_component nucleus|GO:0005634||IEA  go_process G1 phase of mitotic cell cycle|GO:0000080||ISS  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase regulator activity|GO:0016538||ISS  product CYCD1;1 (CYCLIN D1;1); cyclin-dependent protein kinase regulator  note CYCLIN D1;1 (CYCD1;1); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle, G1 phase of mitotic cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCD2;1 (Cyclin D2;1); cyclin-dependent protein kinase regulator/ protein binding (TAIR:AT2G22490.1); Has 2620 Blast hits to 2618 proteins in 269 species: Archae - 0; Bacteria - 0; Metazoa - 1393; Fungi - 269; Plants - 664; Viruses - 14; Other Eukaryotes - 280 (source: NCBI BLink).  protein_id AT1G70210.1p  transcript_id AT1G70210.1  protein_id AT1G70210.1p  transcript_id AT1G70210.1  
At1g70220	chr1:026447570	0.0	C/26447570-26448009,26447420-26447488,26446449-26446572,26446330-26446371	AT1G70220.1  CDS  gene_syn F20P5.6, F20P5_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24050.1); Has 134 Blast hits to 134 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 57; Fungi - 38; Plants - 30; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G70220.1p  transcript_id AT1G70220.1  protein_id AT1G70220.1p  transcript_id AT1G70220.1  
At1g70230	chr1:026450389	0.0	W/26450389-26450575,26450661-26451724	AT1G70230.1  CDS  gene_syn F20P5.5, F20P5_5  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G01430.1); Has 701 Blast hits to 691 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 701; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G70230.1p  transcript_id AT1G70230.1  protein_id AT1G70230.1p  transcript_id AT1G70230.1  
At1g70250	chr1:026452975	0.0	W/26452975-26453263,26453348-26453419,26453783-26453845,26453932-26454696,26454782-26454814,26454911-26456088	AT1G70250.1  CDS  gene_syn F20P5.3, F20P5_3  function Encodes a Protease inhibitor/seed storage/LTP family protein  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function transmembrane receptor protein serine/threonine kinase activity|GO:0004675||ISS  product receptor serine/threonine kinase, putative  note receptor serine/threonine kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, transmembrane receptor protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: PR5K; kinase/ transmembrane receptor protein serine/threonine kinase (TAIR:AT5G38280.1); Has 92792 Blast hits to 87814 proteins in 3077 species: Archae - 69; Bacteria - 7484; Metazoa - 39258; Fungi - 7484; Plants - 21822; Viruses - 994; Other Eukaryotes - 15681 (source: NCBI BLink).  protein_id AT1G70250.1p  transcript_id AT1G70250.1  protein_id AT1G70250.1p  transcript_id AT1G70250.1  
At1g70260	chr1:026459139	0.0	C/26459139-26459338,26458971-26459033,26458322-26458438,26457974-26458229,26457717-26457875,26457345-26457496,26457067-26457247	AT1G70260.1  CDS  gene_syn F20P5.1, F20P5_1  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_function molecular_function|GO:0003674||ND  product nodulin MtN21 family protein  note nodulin MtN21 family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin-related (TAIR:AT1G60050.1); Has 665 Blast hits to 653 proteins in 32 species: Archae - 0; Bacteria - 20; Metazoa - 0; Fungi - 0; Plants - 621; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT1G70260.1p  transcript_id AT1G70260.1  protein_id AT1G70260.1p  transcript_id AT1G70260.1  
At1g70270	chr1:026464427	0.0	W/26464427-26464687	AT1G70270.1  CDS  gene_syn F17O7.20, F17O7_20  go_function DNA binding|GO:0003677||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product ATP binding / DNA binding  note ATP binding / DNA binding; FUNCTIONS IN: DNA binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, C globular stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23965.1); Has 14 Blast hits to 14 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G70270.1p  transcript_id AT1G70270.1  protein_id AT1G70270.1p  transcript_id AT1G70270.1  
At1g70280	chr1:026467957	0.0	C/26467957-26468116,26467340-26467510,26467040-26467252,26466870-26466958,26466086-26466796	AT1G70280.1  CDS  gene_syn F17O7.19, F17O7_19  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NHL repeat-containing protein  note NHL repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NHL repeat (InterPro:IPR001258), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: NHL repeat-containing protein (TAIR:AT1G23880.1); Has 5889 Blast hits to 3422 proteins in 296 species: Archae - 60; Bacteria - 949; Metazoa - 1559; Fungi - 428; Plants - 138; Viruses - 2; Other Eukaryotes - 2753 (source: NCBI BLink).  protein_id AT1G70280.1p  transcript_id AT1G70280.1  protein_id AT1G70280.1p  transcript_id AT1G70280.1  
At1g70280	chr1:026468384	0.0	C/26468384-26468471,26468222-26468302,26467957-26468133,26467340-26467510,26467040-26467252,26466870-26466958,26466086-26466796	AT1G70280.2  CDS  gene_syn F17O7.19, F17O7_19  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NHL repeat-containing protein  note NHL repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NHL repeat (InterPro:IPR001258), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: NHL repeat-containing protein (TAIR:AT1G23880.1); Has 5848 Blast hits to 3428 proteins in 297 species: Archae - 62; Bacteria - 922; Metazoa - 1562; Fungi - 431; Plants - 140; Viruses - 2; Other Eukaryotes - 2729 (source: NCBI BLink).  protein_id AT1G70280.2p  transcript_id AT1G70280.2  protein_id AT1G70280.2p  transcript_id AT1G70280.2  
At1g70290	chr1:026472106	0.0	C/26472106-26474078,26471757-26472030,26471286-26471609	AT1G70290.1  CDS  gene_syn ATTPS8, ATTPSC, F17O7.18, F17O7_18, TPS8, TREHALOSE -6-PHOSPHATASE SYNTHASE S8  gene ATTPS8  function Encodes an enzyme putatively involved in trehalose biosynthesis. Though the protein has both trehalose-6-phosphate synthase (TPS)-like and trehalose-6-phosphate phosphatase (TPP)-like domains, neither activity has been detected in enzymatic assays nor has the protein been able to complement yeast TPS or TPP mutants.  go_process trehalose biosynthetic process|GO:0005992||IEA  go_process metabolic process|GO:0008152||IEA  go_function alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity|GO:0003825|11520870|IGI  go_function trehalose-phosphatase activity|GO:0004805|11520870|IGI  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product ATTPS8; alpha,alpha-trehalose-phosphate synthase (UDP-forming)/ transferase, transferring glycosyl groups / trehalose-phosphatase  note ATTPS8; FUNCTIONS IN: transferase activity, transferring glycosyl groups, alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process, metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Glycosyl transferase, family 20 (InterPro:IPR001830), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: ATTPS9; transferase, transferring glycosyl groups / trehalose-phosphatase (TAIR:AT1G23870.1); Has 3108 Blast hits to 3063 proteins in 647 species: Archae - 40; Bacteria - 1647; Metazoa - 186; Fungi - 473; Plants - 359; Viruses - 0; Other Eukaryotes - 403 (source: NCBI BLink).  protein_id AT1G70290.1p  transcript_id AT1G70290.1  protein_id AT1G70290.1p  transcript_id AT1G70290.1  
At1g70300	chr1:026481198	0.0	C/26481198-26481233,26480605-26481100,26480446-26480499,26479623-26479936,26479155-26479533,26477993-26479062	AT1G70300.1  CDS  gene_syn F17O7.17, F17O7_17, KUP6  gene KUP6  function potassium transporter  go_component plasma membrane|GO:0005886|17317660|IDA  go_process potassium ion transport|GO:0006813||IEA  go_process potassium ion transport|GO:0006813||ISS  go_function potassium ion transmembrane transporter activity|GO:0015079||ISS  product KUP6; potassium ion transmembrane transporter  note KUP6; FUNCTIONS IN: potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Potassium uptake protein, kup (InterPro:IPR018519), K+ potassium transporter (InterPro:IPR003855); BEST Arabidopsis thaliana protein match is: potassium transporter, putative (TAIR:AT5G14880.1); Has 2008 Blast hits to 1980 proteins in 579 species: Archae - 13; Bacteria - 1377; Metazoa - 0; Fungi - 55; Plants - 439; Viruses - 4; Other Eukaryotes - 120 (source: NCBI BLink).  protein_id AT1G70300.1p  transcript_id AT1G70300.1  protein_id AT1G70300.1p  transcript_id AT1G70300.1  
At1g70310	chr1:026487172	0.0	C/26487172-26487352,26486998-26487074,26486788-26486910,26486400-26486504,26486213-26486285,26485867-26486134,26485650-26485779,26485497-26485562	AT1G70310.1  CDS  gene_syn F17O7.16, F17O7_16, SPDS2, spermidine synthase 2  gene SPDS2  function Spermidine synthase.  go_component plasma membrane|GO:0005886|17644812|IDA  go_process spermidine biosynthetic process|GO:0008295|12220656|IDA  go_function spermidine synthase activity|GO:0004766|12220656|IDA  product SPDS2 (spermidine synthase 2); spermidine synthase  note spermidine synthase 2 (SPDS2); FUNCTIONS IN: spermidine synthase activity; INVOLVED IN: spermidine biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: SPDS1 (spermidine synthase 1); spermidine synthase (TAIR:AT1G23820.1); Has 3745 Blast hits to 3744 proteins in 929 species: Archae - 113; Bacteria - 1689; Metazoa - 328; Fungi - 127; Plants - 321; Viruses - 0; Other Eukaryotes - 1167 (source: NCBI BLink).  protein_id AT1G70310.1p  transcript_id AT1G70310.1  protein_id AT1G70310.1p  transcript_id AT1G70310.1  
At1g70320	chr1:026501249	0.0	C/26501249-26501281,26500945-26501040,26500650-26500856,26492793-26500505,26492399-26492716,26492044-26492245,26491716-26491960,26491372-26491622,26490106-26491213,26489877-26490023,26489685-26489765,26489370-26489595,26489131-26489270,26488919-26489025,26488745-26488847	AT1G70320.1  CDS  gene_syn F17O7.15, F17O7_15, UBIQUITIN-PROTEIN LIGASE 2, UPL2  gene UPL2  function encodes a ubiquitin-protein ligase-like protein containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.  go_component ubiquitin ligase complex|GO:0000151|10571878|ISS  go_component ubiquitin ligase complex|GO:0000151|11019805|TAS  go_component nucleus|GO:0005634|18433157|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process protein ubiquitination|GO:0016567|10571878|ISS  go_function ubiquitin-protein ligase activity|GO:0004842|10571878|ISS  go_function ubiquitin-protein ligase activity|GO:0004842|11019805|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UPL2 (UBIQUITIN-PROTEIN LIGASE 2); ubiquitin-protein ligase  note UBIQUITIN-PROTEIN LIGASE 2 (UPL2); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process, protein ubiquitination; LOCATED IN: cytosol, mitochondrion, ubiquitin ligase complex, nucleus; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), E3 ubiquitin ligase, region of unknown function DUF913 (InterPro:IPR010314), HECT (InterPro:IPR000569), Ubiquitin interacting motif (InterPro:IPR003903), Armadillo-type fold (InterPro:IPR016024), E3 ubiquitin ligase, region of unknown function DUF908 (InterPro:IPR010309), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: UPL1 (UBIQUITIN-PROTEIN LIGASE 1); ubiquitin-protein ligase (TAIR:AT1G55860.1); Has 31246 Blast hits to 16957 proteins in 822 species: Archae - 126; Bacteria - 6906; Metazoa - 9246; Fungi - 4526; Plants - 1343; Viruses - 523; Other Eukaryotes - 8576 (source: NCBI BLink).  protein_id AT1G70320.1p  transcript_id AT1G70320.1  protein_id AT1G70320.1p  transcript_id AT1G70320.1  
At1g70330	chr1:026502920	0.0	W/26502920-26503538,26503627-26504360	AT1G70330.1  CDS  gene_syn ENT1,AT, EQUILIBRATIVE NUCLEOTIDE TRANSPORTER 1  gene ENT1,AT  function encodes an adenosine transporter that catalyze a proton-dependent adenosine transport.  go_component plasma membrane|GO:0005886|17151019|IDA  go_process transport|GO:0006810||IEA  go_function nucleoside transmembrane transporter activity|GO:0005337||ISS  go_function nucleoside transmembrane transporter activity, against a concentration gradient|GO:0010174|11749958|IGI  product ENT1,AT (EQUILIBRATIVE NUCLEOTIDE TRANSPORTER 1); nucleoside transmembrane transporter/ nucleoside transmembrane transporter, against a concentration gradient  note EQUILIBRATIVE NUCLEOTIDE TRANSPORTER 1 (ENT1,AT); FUNCTIONS IN: nucleoside transmembrane transporter activity, against a concentration gradient, nucleoside transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Delayed-early response protein/equilibrative nucleoside transporter (InterPro:IPR002259); BEST Arabidopsis thaliana protein match is: equilibrative nucleoside transporter, putative (ENT8) (TAIR:AT1G02630.1); Has 863 Blast hits to 789 proteins in 145 species: Archae - 0; Bacteria - 3; Metazoa - 486; Fungi - 78; Plants - 88; Viruses - 3; Other Eukaryotes - 205 (source: NCBI BLink).  protein_id AT1G70330.1p  transcript_id AT1G70330.1  protein_id AT1G70330.1p  transcript_id AT1G70330.1  
At1g70340	chr1:026505660	0.0	C/26505660-26506389,26505480-26505574,26505274-26505365,26504567-26505182	AT1G70340.1  CDS  gene_syn F17O7.12, F17O7_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF936, plant (InterPro:IPR010341); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23790.1); Has 115 Blast hits to 93 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 2; Plants - 107; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G70340.1p  transcript_id AT1G70340.1  protein_id AT1G70340.1p  transcript_id AT1G70340.1  
At1g70350	chr1:026508084	0.0	C/26508084-26508262,26507815-26507933,26507341-26507360	AT1G70350.1  CDS  gene_syn F17O7.11, F17O7_11  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 67 Blast hits to 67 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G70350.1p  transcript_id AT1G70350.1  protein_id AT1G70350.1p  transcript_id AT1G70350.1  
At1g70360	chr1:026508778	0.0	W/26508778-26508977,26509001-26509325	AT1G70360.1  CDS  gene_syn F17O7.10, F17O7_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box protein-related  note F-box protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G23780.1); Has 35 Blast hits to 35 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G70360.1p  transcript_id AT1G70360.1  protein_id AT1G70360.1p  transcript_id AT1G70360.1  
At1g70370	chr1:026514948	0.0	C/26514948-26514998,26513003-26514832	AT1G70370.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function polygalacturonase activity|GO:0004650||ISS  product BURP domain-containing protein / polygalacturonase, putative  note BURP domain-containing protein / polygalacturonase, putative; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BURP (InterPro:IPR004873); BEST Arabidopsis thaliana protein match is: JP630; polygalacturonase (TAIR:AT1G23760.1); Has 2575 Blast hits to 1708 proteins in 280 species: Archae - 7; Bacteria - 541; Metazoa - 508; Fungi - 285; Plants - 347; Viruses - 5; Other Eukaryotes - 882 (source: NCBI BLink).  protein_id AT1G70370.1p  transcript_id AT1G70370.1  protein_id AT1G70370.1p  transcript_id AT1G70370.1  
At1g70380	chr1:026526212	0.0	C/26526212-26527345	AT1G70380.1  CDS  gene_syn F17O7.8, F17O7_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G70960.1); Has 695 Blast hits to 675 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 695; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G70380.1p  transcript_id AT1G70380.1  protein_id AT1G70380.1p  transcript_id AT1G70380.1  
At1g70390	chr1:026529907	0.0	C/26529907-26530282,26529171-26529793	AT1G70390.1  CDS  gene_syn F17O7.7, F17O7_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G70960.1); Has 334 Blast hits to 331 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 334; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G70390.1p  transcript_id AT1G70390.1  protein_id AT1G70390.1p  transcript_id AT1G70390.1  
At1g70400	chr1:026532614	0.0	C/26532614-26533126	AT1G70400.1  CDS  gene_syn F17O7.6, F17O7_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NOSIC (InterPro:IPR012976); BEST Arabidopsis thaliana protein match is: emb1220 (embryo defective 1220) (TAIR:AT1G60170.1); Has 347 Blast hits to 347 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 98; Plants - 69; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT1G70400.1p  transcript_id AT1G70400.1  protein_id AT1G70400.1p  transcript_id AT1G70400.1  
At1g70400	chr1:026532659	0.0	C/26532659-26533126,26532496-26532584,26532129-26532201	AT1G70400.2  CDS  gene_syn F17O7.6, F17O7_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NOSIC (InterPro:IPR012976); BEST Arabidopsis thaliana protein match is: emb1220 (embryo defective 1220) (TAIR:AT1G60170.1); Has 315 Blast hits to 315 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 91; Fungi - 92; Plants - 71; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT1G70400.2p  transcript_id AT1G70400.2  protein_id AT1G70400.2p  transcript_id AT1G70400.2  
At1g70400	chr1:026532659	0.0	C/26532659-26533126,26532496-26532584,26532149-26532198,26531863-26532016,26531399-26531462	AT1G70400.3  CDS  gene_syn F17O7.6, F17O7_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NOSIC (InterPro:IPR012976); BEST Arabidopsis thaliana protein match is: emb1220 (embryo defective 1220) (TAIR:AT1G60170.1).  protein_id AT1G70400.3p  transcript_id AT1G70400.3  protein_id AT1G70400.3p  transcript_id AT1G70400.3  
At1g70410	chr1:026536453	0.0	C/26536453-26536505,26536042-26536182,26535647-26535695,26535285-26535401,26535151-26535204,26534666-26534754,26534412-26534517,26534167-26534334	AT1G70410.1  CDS  gene_syn ATBCA4, BCA4, BETA CARBONIC ANHYDRASE 4, F17O7.5, F17O7_5  gene BCA4  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process carbon utilization|GO:0015976||IEA  go_function carbonate dehydratase activity|GO:0004089||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component plasma membrane|GO:0005886|17407539|IDA  go_process carbon utilization|GO:0015976||ISS  go_function carbonate dehydratase activity|GO:0004089||ISS  go_function zinc ion binding|GO:0008270||ISS  product carbonic anhydrase, putative / carbonate dehydratase, putative  note BETA CARBONIC ANHYDRASE 4 (BCA4); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: carbon utilization; LOCATED IN: plasma membrane, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: BCA3 (BETA CARBONIC ANHYDRASE 4); carbonate dehydratase/ zinc ion binding (TAIR:AT1G23730.1); Has 3164 Blast hits to 3152 proteins in 940 species: Archae - 22; Bacteria - 2255; Metazoa - 48; Fungi - 145; Plants - 233; Viruses - 0; Other Eukaryotes - 461 (source: NCBI BLink).  protein_id AT1G70410.1p  transcript_id AT1G70410.1  protein_id AT1G70410.1p  transcript_id AT1G70410.1  
At1g70410	chr1:026536453	0.0	C/26536453-26536505,26536042-26536182,26535647-26535695,26535285-26535401,26535151-26535204,26534666-26534754,26534412-26534517,26534167-26534334	AT1G70410.3  CDS  gene_syn ATBCA4, BCA4, BETA CARBONIC ANHYDRASE 4, F17O7.5, F17O7_5  gene BCA4  go_process carbon utilization|GO:0015976||IEA  go_function carbonate dehydratase activity|GO:0004089||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component plasma membrane|GO:0005886|17407539|IDA  go_process carbon utilization|GO:0015976||ISS  go_function carbonate dehydratase activity|GO:0004089||ISS  go_function zinc ion binding|GO:0008270||ISS  product carbonic anhydrase, putative / carbonate dehydratase, putative  note BETA CARBONIC ANHYDRASE 4 (BCA4); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: carbon utilization; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: BCA3 (BETA CARBONIC ANHYDRASE 4); carbonate dehydratase/ zinc ion binding (TAIR:AT1G23730.1); Has 3164 Blast hits to 3152 proteins in 940 species: Archae - 22; Bacteria - 2255; Metazoa - 48; Fungi - 145; Plants - 233; Viruses - 0; Other Eukaryotes - 461 (source: NCBI BLink).  protein_id AT1G70410.3p  transcript_id AT1G70410.3  protein_id AT1G70410.3p  transcript_id AT1G70410.3  
At1g70410	chr1:026537404	0.0	C/26537404-26537457,26536453-26536517,26536042-26536182,26535647-26535695,26535285-26535401,26535151-26535204,26534666-26534754,26534412-26534517,26534167-26534334	AT1G70410.2  CDS  gene_syn ATBCA4, BCA4, BETA CARBONIC ANHYDRASE 4, F17O7.5, F17O7_5  gene BCA4  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process carbon utilization|GO:0015976||IEA  go_function carbonate dehydratase activity|GO:0004089||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component plasma membrane|GO:0005886|17407539|IDA  go_process carbon utilization|GO:0015976||ISS  go_function carbonate dehydratase activity|GO:0004089||ISS  go_function zinc ion binding|GO:0008270||ISS  product carbonic anhydrase, putative / carbonate dehydratase, putative  note BETA CARBONIC ANHYDRASE 4 (BCA4); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: carbon utilization; LOCATED IN: plasma membrane, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: BCA3 (BETA CARBONIC ANHYDRASE 4); carbonate dehydratase/ zinc ion binding (TAIR:AT1G23730.1); Has 3164 Blast hits to 3152 proteins in 940 species: Archae - 22; Bacteria - 2255; Metazoa - 48; Fungi - 145; Plants - 233; Viruses - 0; Other Eukaryotes - 461 (source: NCBI BLink).  protein_id AT1G70410.2p  transcript_id AT1G70410.2  protein_id AT1G70410.2p  transcript_id AT1G70410.2  
At1g70420	chr1:026539840	0.0	C/26539840-26540658	AT1G70420.1  CDS  gene_syn F17O7.4, F17O7_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1645 (InterPro:IPR012442); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23710.1); Has 116 Blast hits to 116 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G70420.1p  transcript_id AT1G70420.1  protein_id AT1G70420.1p  transcript_id AT1G70420.1  
At1g70430	chr1:026545589	0.0	W/26545589-26545756,26545847-26546101,26546168-26546292,26546364-26546412,26546533-26546646,26546726-26546896,26547012-26547143,26547225-26547353,26547425-26547504,26547622-26547739,26547844-26547954,26548048-26548158,26548266-26548346,26548433-26548473,26548563-26548614,26548709-26548756	AT1G70430.1  CDS  gene_syn F17O7.3, F17O7_3  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G14720.1); Has 81669 Blast hits to 80931 proteins in 2646 species: Archae - 62; Bacteria - 7223; Metazoa - 36005; Fungi - 7387; Plants - 15650; Viruses - 397; Other Eukaryotes - 14945 (source: NCBI BLink).  protein_id AT1G70430.1p  transcript_id AT1G70430.1  protein_id AT1G70430.1p  transcript_id AT1G70430.1  
At1g70440	chr1:026550057	0.0	C/26550057-26550520,26549733-26549971,26549529-26549647,26549354-26549449	AT1G70440.1  CDS  gene_syn F17O7.2, F17O7_2, SIMILAR TO RCD ONE 3, SRO3  gene SRO3  function Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation.  go_component nucleus|GO:0005634||IEA  go_function NAD+ ADP-ribosyltransferase activity|GO:0003950||IEA  go_process biological_process|GO:0008150||ND  product SRO3 (SIMILAR TO RCD ONE 3); NAD+ ADP-ribosyltransferase  note SIMILAR TO RCD ONE 3 (SRO3); FUNCTIONS IN: NAD+ ADP-ribosyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Poly(ADP-ribose) polymerase, catalytic region (InterPro:IPR012317); BEST Arabidopsis thaliana protein match is: SRO2 (SIMILAR TO RCD ONE 2); NAD+ ADP-ribosyltransferase (TAIR:AT1G23550.1); Has 110 Blast hits to 105 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 21; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G70440.1p  transcript_id AT1G70440.1  protein_id AT1G70440.1p  transcript_id AT1G70440.1  
At1g70450	chr1:026552576	0.0	W/26552576-26552981,26553067-26553156,26553230-26553300,26553382-26553458,26553661-26553808,26553895-26554056,26554207-26554437	AT1G70450.1  CDS  gene_syn F24J13.2, F24J13_2  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT1G70460.1); Has 82971 Blast hits to 82073 proteins in 3100 species: Archae - 44; Bacteria - 7902; Metazoa - 36321; Fungi - 6268; Plants - 18312; Viruses - 347; Other Eukaryotes - 13777 (source: NCBI BLink).  protein_id AT1G70450.1p  transcript_id AT1G70450.1  protein_id AT1G70450.1p  transcript_id AT1G70450.1  
At1g70460	chr1:026556155	0.0	W/26556155-26557001,26557081-26557551,26557637-26557723,26557822-26557892,26558006-26558082,26558238-26558385,26558472-26558633,26558725-26558994	AT1G70460.1  CDS  gene_syn F24J13.3, F24J13_3  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component membrane|GO:0016020|11152613|ISS  go_function ATP binding|GO:0005524||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G23540.1); Has 300410 Blast hits to 163324 proteins in 4630 species: Archae - 579; Bacteria - 49359; Metazoa - 127377; Fungi - 34904; Plants - 39670; Viruses - 6582; Other Eukaryotes - 41939 (source: NCBI BLink).  protein_id AT1G70460.1p  transcript_id AT1G70460.1  protein_id AT1G70460.1p  transcript_id AT1G70460.1  
At1g70470	chr1:026559570	0.0	C/26559570-26560034	AT1G70470.1  CDS  gene_syn F24J13.4, F24J13_4  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23530.1); Has 45 Blast hits to 45 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 7; Fungi - 9; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G70470.1p  transcript_id AT1G70470.1  protein_id AT1G70470.1p  transcript_id AT1G70470.1  
At1g70480	chr1:026562250	0.0	W/26562250-26562420,26562519-26562677,26562767-26562889,26562967-26563110,26563189-26563608	AT1G70480.2  CDS  gene_syn F24J13.5, F24J13_5  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23560.1); Has 109 Blast hits to 99 proteins in 9 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G70480.2p  transcript_id AT1G70480.2  protein_id AT1G70480.2p  transcript_id AT1G70480.2  
At1g70480	chr1:026562304	0.0	W/26562304-26562420,26562519-26562677,26562767-26562889,26562967-26563110,26563189-26563608	AT1G70480.1  CDS  gene_syn F24J13.5, F24J13_5  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23560.1); Has 109 Blast hits to 99 proteins in 9 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G70480.1p  transcript_id AT1G70480.1  protein_id AT1G70480.1p  transcript_id AT1G70480.1  
At1g70490	chr1:026565005	0.0	C/26565005-26565152,26564840-26564910,26564640-26564759,26564434-26564552,26564275-26564356,26564162-26564167	AT1G70490.1  CDS  gene_syn ARFA1D, ATARFA1D, F24J13.6, F24J13_6  gene ARFA1D  function A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function protein binding|GO:0005515|15723828|TAS  go_function GTP binding|GO:0005525|15723828|ISS  go_function GTP binding|GO:0005525|15723828|TAS  go_function phospholipase activator activity|GO:0016004|15723828|TAS  product ARFA1D; GTP binding / phospholipase activator/ protein binding  note ARFA1D; FUNCTIONS IN: protein binding, phospholipase activator activity, GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ATARF1 (ADP-RIBOSYLATION FACTOR 1); GTP binding / phospholipase activator/ protein binding (TAIR:AT1G23490.1); Has 12057 Blast hits to 12040 proteins in 421 species: Archae - 12; Bacteria - 44; Metazoa - 6621; Fungi - 1335; Plants - 1253; Viruses - 3; Other Eukaryotes - 2789 (source: NCBI BLink).  protein_id AT1G70490.1p  transcript_id AT1G70490.1  protein_id AT1G70490.1p  transcript_id AT1G70490.1  
At1g70490	chr1:026565005	0.0	C/26565005-26565152,26564840-26564910,26564640-26564759,26564434-26564552,26564275-26564356,26564162-26564167	AT1G70490.2  CDS  gene_syn ARFA1D, ATARFA1D, F24J13.6, F24J13_6  gene ARFA1D  function A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function protein binding|GO:0005515|15723828|TAS  go_function GTP binding|GO:0005525|15723828|ISS  go_function GTP binding|GO:0005525|15723828|TAS  go_function phospholipase activator activity|GO:0016004|15723828|TAS  product ARFA1D; GTP binding / phospholipase activator/ protein binding  note ARFA1D; FUNCTIONS IN: protein binding, phospholipase activator activity, GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ATARF1 (ADP-RIBOSYLATION FACTOR 1); GTP binding / phospholipase activator/ protein binding (TAIR:AT1G23490.1); Has 12057 Blast hits to 12040 proteins in 421 species: Archae - 12; Bacteria - 44; Metazoa - 6621; Fungi - 1335; Plants - 1253; Viruses - 3; Other Eukaryotes - 2789 (source: NCBI BLink).  protein_id AT1G70490.2p  transcript_id AT1G70490.2  protein_id AT1G70490.2p  transcript_id AT1G70490.2  
At1g70490	chr1:026565005	0.0	C/26565005-26565152,26564840-26564910,26564640-26564759,26564434-26564552,26564275-26564356,26564162-26564167	AT1G70490.3  CDS  gene_syn ARFA1D, ATARFA1D, F24J13.6, F24J13_6  gene ARFA1D  function A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function protein binding|GO:0005515|15723828|TAS  go_function GTP binding|GO:0005525|15723828|ISS  go_function GTP binding|GO:0005525|15723828|TAS  go_function phospholipase activator activity|GO:0016004|15723828|TAS  product ARFA1D; GTP binding / phospholipase activator/ protein binding  note ARFA1D; FUNCTIONS IN: protein binding, phospholipase activator activity, GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ATARF1 (ADP-RIBOSYLATION FACTOR 1); GTP binding / phospholipase activator/ protein binding (TAIR:AT1G23490.1); Has 12057 Blast hits to 12040 proteins in 421 species: Archae - 12; Bacteria - 44; Metazoa - 6621; Fungi - 1335; Plants - 1253; Viruses - 3; Other Eukaryotes - 2789 (source: NCBI BLink).  protein_id AT1G70490.3p  transcript_id AT1G70490.3  protein_id AT1G70490.3p  transcript_id AT1G70490.3  
At1g70500	chr1:026568478	0.0	C/26568478-26568729,26568230-26568358,26567954-26568124,26567843-26567863,26567544-26567751,26567364-26567445,26567179-26567287,26566980-26567096,26566579-26566896	AT1G70500.1  CDS  gene_syn F24J13.7, F24J13_7  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product polygalacturonase, putative / pectinase, putative  note polygalacturonase, putative / pectinase, putative; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: polygalacturonase (TAIR:AT1G23460.1); Has 2426 Blast hits to 2415 proteins in 306 species: Archae - 2; Bacteria - 456; Metazoa - 8; Fungi - 987; Plants - 893; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT1G70500.1p  transcript_id AT1G70500.1  protein_id AT1G70500.1p  transcript_id AT1G70500.1  
At1g70505	chr1:026570647	0.0	W/26570647-26571056,26571146-26571179,26571286-26571498,26571581-26571670,26571747-26571812,26571921-26571995,26572104-26572151,26572323-26572463	AT1G70505.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10660.4); Has 81 Blast hits to 80 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G70505.1p  transcript_id AT1G70505.1  protein_id AT1G70505.1p  transcript_id AT1G70505.1  
At1g70510	chr1:026576635	0.0	W/26576635-26576907,26577148-26577270,26577356-26577494,26581657-26581898,26581990-26582145	AT1G70510.1  CDS  gene_syn ARABIDOPSIS THALIANA KN 1, ATK1, F24J13.8, F24J13_8, KNAT2, KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2  gene KNAT2  function A member of class I knotted1-like homeobox gene family (together with KNAT1). Similar to the knotted1 (kn1) homeobox gene of maize. KNAT2 acts synergistically with cytokinins and antagonistically with ethylene based on ectopic expression studies in different mutant backgrounds and hormone treatments. In addition, KNAT2 is negatively regulated by AS and YABBY genes. KNAT2 is strongly expressed in the shoot apex of seedlings, while in mature plants the gene is primarily expressed in flowers and inflorescence stems.  go_component nucleus|GO:0005634|14617066|IDA  go_process response to ethylene stimulus|GO:0009723|12376633|IGI  go_process cytokinin mediated signaling|GO:0009736|12376633|IMP  go_process specification of carpel identity|GO:0010094|11487688|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|7866029|ISS  product KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2); transcription factor  note KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2 (KNAT2); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to ethylene stimulus, cytokinin mediated signaling, specification of carpel identity; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: KNOX2 (InterPro:IPR005541), ELK (InterPro:IPR005539), Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), KNOX1 (InterPro:IPR005540), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KNAT6; DNA binding / transcription activator/ transcription factor (TAIR:AT1G23380.1); Has 5142 Blast hits to 5142 proteins in 282 species: Archae - 0; Bacteria - 0; Metazoa - 1511; Fungi - 163; Plants - 3382; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT1G70510.1p  transcript_id AT1G70510.1  protein_id AT1G70510.1p  transcript_id AT1G70510.1  
At1g70518	chr1:026583570	0.0	W/26583570-26584684	AT1G70518.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G70518.1  
At1g70520	chr1:026586566	0.0	C/26586566-26587334,26586378-26586491,26586157-26586296,26585859-26586069,26585530-26585764,26585297-26585447,26584888-26585217	AT1G70520.1  CDS  gene_syn F24J13.9, F24J13_9  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G40380.1); Has 88792 Blast hits to 87702 proteins in 3400 species: Archae - 53; Bacteria - 7706; Metazoa - 38917; Fungi - 6981; Plants - 19431; Viruses - 436; Other Eukaryotes - 15268 (source: NCBI BLink).  protein_id AT1G70520.1p  transcript_id AT1G70520.1  protein_id AT1G70520.1p  transcript_id AT1G70520.1  
At1g70530	chr1:026591006	0.0	C/26591006-26591379,26590512-26590900,26590318-26590431,26590035-26590174,26589730-26589940,26589402-26589636,26589168-26589312,26588750-26589082	AT1G70530.1  CDS  gene_syn F24J13.10, F24J13_10  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G40380.1); Has 86025 Blast hits to 84934 proteins in 3436 species: Archae - 55; Bacteria - 7756; Metazoa - 37741; Fungi - 6539; Plants - 18862; Viruses - 424; Other Eukaryotes - 14648 (source: NCBI BLink).  protein_id AT1G70530.1p  transcript_id AT1G70530.1  protein_id AT1G70530.1p  transcript_id AT1G70530.1  
At1g70540	chr1:026593973	0.0	W/26593973-26594476	AT1G70540.1  CDS  gene_syn EDA24, F24J13.11, F24J13_11, embryo sac development arrest 24  gene EDA24  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process polar nucleus fusion|GO:0010197|15634699|IMP  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product EDA24 (embryo sac development arrest 24); enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor  note embryo sac development arrest 24 (EDA24); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: polar nucleus fusion; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, sepal, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT1G23350.1); Has 40 Blast hits to 40 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G70540.1p  transcript_id AT1G70540.1  protein_id AT1G70540.1p  transcript_id AT1G70540.1  
At1g70550	chr1:026597510	0.0	W/26597510-26597866,26598066-26598152,26598236-26598445,26598762-26598980,26599082-26599228,26599511-26599888	AT1G70550.1  CDS  gene_syn F24J13.12, F24J13_12  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23340.2); Has 437 Blast hits to 404 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 10; Plants - 423; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G70550.1p  transcript_id AT1G70550.1  protein_id AT1G70550.1p  transcript_id AT1G70550.1  
At1g70550	chr1:026597675	0.0	W/26597675-26597866,26598066-26598152,26598236-26598445,26598762-26598980,26599082-26599228,26599511-26599888	AT1G70550.2  CDS  gene_syn F24J13.12, F24J13_12  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23340.2); Has 437 Blast hits to 404 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 10; Plants - 423; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G70550.2p  transcript_id AT1G70550.2  protein_id AT1G70550.2p  transcript_id AT1G70550.2  
At1g70560	chr1:026604894	0.0	W/26604894-26604979,26605110-26605413,26606332-26606621,26606714-26607009,26607120-26607319	AT1G70560.1  CDS  gene_syn F24J13.13, F24J13_13, SAV3, SHADE AVOIDANCE 3, TAA1, TRYPTOPHAN AMINOTRANSFERASE OF ARABIDOPSIS 1, WEAK ETHYLENE INSENSITIVE 8, WEI8  gene TAA1  function TAA1 is involved in the shade-induced production of indole-3-pyruvate (IPA), a precursor to IAA, a biologically active auxin. It is also involved in regulating many aspects of plant growth and development from embryogenesis to flower formation and plays a role in ethylene-mediated signaling. This enzyme can catalyze the formation of IPA from L-tryptophan. Though L-Trp is expected to be the preferred substrate in vivo, TAA1 also acts as an aminotransferase using L-Phe, L-Tyr, L-Leu, L-Ala, L-Met, and L-Gln.  go_component cytoplasm|GO:0005737|18394996|IDA  go_process shade avoidance|GO:0009641|18394996|IMP  go_process indoleacetic acid biosynthetic process|GO:0009684|18394996|IMP  go_process response to ethylene stimulus|GO:0009723|18394997|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|18394997|IGI  go_process flower development|GO:0009908|18394997|IGI  go_process positive gravitropism|GO:0009958|18394997|IMP  go_process maintenance of root meristem identity|GO:0010078|18394997|IGI  go_process phloem or xylem histogenesis|GO:0010087|18394997|IGI  go_process cotyledon vascular tissue pattern formation|GO:0010588|18394997|IGI  go_process shoot system development|GO:0022621|18394997|IGI  go_process root development|GO:0048364|18394997|IMP  go_process leaf development|GO:0048366|18394996|IMP  go_process gynoecium development|GO:0048467|18394997|IGI  go_process cotyledon development|GO:0048825|18394997|IGI  go_process primary root development|GO:0080022|18394997|IGI  go_function L-alanine:2-oxoglutarate aminotransferase activity|GO:0004021|18394996|IDA  go_function L-tyrosine:2-oxoglutarate aminotransferase activity|GO:0004838|18394996|IDA  go_function carbon-sulfur lyase activity|GO:0016846||ISS  go_function pyridoxal phosphate binding|GO:0030170|18394996|IDA  go_function L-phenylalanine:pyruvate aminotransferase activity|GO:0047312|18394996|IDA  go_function L-leucine:2-oxoglutarate aminotransferase activity|GO:0050048|18394996|IDA  go_function L-tryptophan:2-oxoglutarate aminotransferase activity|GO:0050362|18394996|IDA  go_function L-tryptophan:pyruvate aminotransferase activity|GO:0080097|18394996|IDA  go_function L-tyrosine:pyruvate aminotransferase activity|GO:0080098|18394996|IDA  go_function L-methionine:2-oxoglutarate aminotransferase activity|GO:0080099|18394996|IDA  go_function L-glutamine:2-oxoglutarate aminotransferase activity|GO:0080100|18394996|IDA  go_function L-phenylalanine:2-oxoglutarate aminotransferase activity|GO:0080130|18394996|IDA  product TAA1 (TRYPTOPHAN AMINOTRANSFERASE OF ARABIDOPSIS 1); L-alanine:2-oxoglutarate aminotransferase/ L-glutamine:2-oxoglutarate aminotransferase/ L-leucine:2-oxoglutarate aminotransferase/ L-methionine:2-oxoglutarate aminotransferase/ L-phenylalanine:2-oxoglutarate aminotransferase/ L-phenylalanine:pyruvate aminotransferase/ L-tryptophan:2-oxoglutarate aminotransferase/ L-tryptophan:pyruvate aminotransferase/ L-tyrosine:2-oxoglutarate aminotransferase/ L-tyrosine:pyruvate aminotransferase/ carbon-sulfur lyase/ pyridoxal phosphate binding  note TRYPTOPHAN AMINOTRANSFERASE OF ARABIDOPSIS 1 (TAA1); FUNCTIONS IN: in 12 functions; INVOLVED IN: in 15 processes; LOCATED IN: cytoplasm; EXPRESSED IN: 34 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Allinase, C-terminal (InterPro:IPR006948), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: TAR1 (TRYPTOPHAN AMINOTRANSFERASE RELATED 1); L-tryptophan:2-oxoglutarate aminotransferase/ L-tryptophan:pyruvate aminotransferase/ carbon-sulfur lyase (TAIR:AT1G23320.1); Has 258 Blast hits to 257 proteins in 64 species: Archae - 28; Bacteria - 62; Metazoa - 0; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT1G70560.1p  transcript_id AT1G70560.1  protein_id AT1G70560.1p  transcript_id AT1G70560.1  
At1g70570	chr1:026608719	0.0	W/26608719-26609106,26609366-26609848,26609933-26610090,26610210-26610293,26610416-26610468,26610598-26610679,26610835-26610942,26611128-26611251,26611657-26611742,26611841-26612062	AT1G70570.1  CDS  gene_syn F24J13.14, F24J13_14  go_component chloroplast|GO:0009507|18431481|IDA  go_process metabolic process|GO:0008152||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||IEA  go_process tryptophan biosynthetic process|GO:0000162||ISS  go_function anthranilate phosphoribosyltransferase activity|GO:0004048||ISS  product anthranilate phosphoribosyltransferase, putative  note anthranilate phosphoribosyltransferase, putative; FUNCTIONS IN: anthranilate phosphoribosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: tryptophan biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 3, N-terminal (InterPro:IPR017459), Glycosyl transferase, family 3 (InterPro:IPR000312); Has 991 Blast hits to 991 proteins in 393 species: Archae - 46; Bacteria - 770; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).  protein_id AT1G70570.1p  transcript_id AT1G70570.1  protein_id AT1G70570.1p  transcript_id AT1G70570.1  
At1g70580	chr1:026613222	0.0	W/26613222-26613338,26613431-26613496,26613569-26613686,26613778-26613859,26613958-26614045,26614319-26614477,26614585-26614758,26614882-26615013,26615089-26615154,26615236-26615300,26615388-26615636,26615716-26615845	AT1G70580.1  CDS  gene_syn ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2, AOAT2, F5A18.24, F5A18_24, GGT2, GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2  gene AOAT2  function Similar to glutamate-glyoxylate transaminase enzyme encoded by AOAT1  go_component peroxisome|GO:0005777|12154131|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component peroxisome|GO:0005777|12631323|ISS  go_process photorespiration|GO:0009853||ISS  go_function L-alanine:2-oxoglutarate aminotransferase activity|GO:0004021||ISS  go_function glycine:2-oxoglutarate aminotransferase activity|GO:0047958|12631323|ISS  product AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2); L-alanine:2-oxoglutarate aminotransferase/ glycine:2-oxoglutarate aminotransferase  note ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2 (AOAT2); FUNCTIONS IN: glycine:2-oxoglutarate aminotransferase activity, L-alanine:2-oxoglutarate aminotransferase activity; INVOLVED IN: photorespiration; LOCATED IN: chloroplast stroma, chloroplast, peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: GGT1 (GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE); L-alanine:2-oxoglutarate aminotransferase/ glycine:2-oxoglutarate aminotransferase (TAIR:AT1G23310.1); Has 16071 Blast hits to 16066 proteins in 1642 species: Archae - 440; Bacteria - 8897; Metazoa - 498; Fungi - 457; Plants - 855; Viruses - 0; Other Eukaryotes - 4924 (source: NCBI BLink).  protein_id AT1G70580.1p  transcript_id AT1G70580.1  protein_id AT1G70580.1p  transcript_id AT1G70580.1  
At1g70580	chr1:026613222	0.0	W/26613222-26613338,26613431-26613496,26613569-26613686,26613778-26613859,26613958-26614045,26614319-26614477,26614585-26614758,26614882-26615013,26615089-26615154,26615236-26615300,26615388-26615636,26615716-26615845	AT1G70580.2  CDS  gene_syn ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2, AOAT2, F5A18.24, F5A18_24, GGT2, GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2  gene AOAT2  function Similar to glutamate-glyoxylate transaminase enzyme encoded by AOAT1  go_component peroxisome|GO:0005777|12154131|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component peroxisome|GO:0005777|12631323|ISS  go_process photorespiration|GO:0009853||ISS  go_function L-alanine:2-oxoglutarate aminotransferase activity|GO:0004021||ISS  go_function glycine:2-oxoglutarate aminotransferase activity|GO:0047958|12631323|ISS  product AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2); L-alanine:2-oxoglutarate aminotransferase/ glycine:2-oxoglutarate aminotransferase  note ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2 (AOAT2); FUNCTIONS IN: glycine:2-oxoglutarate aminotransferase activity, L-alanine:2-oxoglutarate aminotransferase activity; INVOLVED IN: photorespiration; LOCATED IN: chloroplast, peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: GGT1 (GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE); L-alanine:2-oxoglutarate aminotransferase/ glycine:2-oxoglutarate aminotransferase (TAIR:AT1G23310.1); Has 16071 Blast hits to 16066 proteins in 1642 species: Archae - 440; Bacteria - 8897; Metazoa - 498; Fungi - 457; Plants - 855; Viruses - 0; Other Eukaryotes - 4924 (source: NCBI BLink).  protein_id AT1G70580.2p  transcript_id AT1G70580.2  protein_id AT1G70580.2p  transcript_id AT1G70580.2  
At1g70580	chr1:026613222	0.0	W/26613222-26613338,26613431-26613496,26613569-26613686,26613778-26613859,26613958-26614045,26614319-26614477,26614585-26614758,26614882-26615013,26615089-26615154,26615236-26615300,26615388-26615636,26615716-26615845	AT1G70580.3  CDS  gene_syn ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2, AOAT2, F5A18.24, F5A18_24, GGT2, GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2  gene AOAT2  function Similar to glutamate-glyoxylate transaminase enzyme encoded by AOAT1  go_component peroxisome|GO:0005777|12154131|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component peroxisome|GO:0005777|12631323|ISS  go_process photorespiration|GO:0009853||ISS  go_function L-alanine:2-oxoglutarate aminotransferase activity|GO:0004021||ISS  go_function glycine:2-oxoglutarate aminotransferase activity|GO:0047958|12631323|ISS  product AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2); L-alanine:2-oxoglutarate aminotransferase/ glycine:2-oxoglutarate aminotransferase  note ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2 (AOAT2); FUNCTIONS IN: glycine:2-oxoglutarate aminotransferase activity, L-alanine:2-oxoglutarate aminotransferase activity; INVOLVED IN: photorespiration; LOCATED IN: chloroplast, peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: GGT1 (GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE); L-alanine:2-oxoglutarate aminotransferase/ glycine:2-oxoglutarate aminotransferase (TAIR:AT1G23310.1); Has 16071 Blast hits to 16066 proteins in 1642 species: Archae - 440; Bacteria - 8897; Metazoa - 498; Fungi - 457; Plants - 855; Viruses - 0; Other Eukaryotes - 4924 (source: NCBI BLink).  protein_id AT1G70580.3p  transcript_id AT1G70580.3  protein_id AT1G70580.3p  transcript_id AT1G70580.3  
At1g70580	chr1:026613222	0.0	W/26613222-26613338,26613431-26613496,26613569-26613686,26613778-26613859,26613958-26614045,26614319-26614477,26614585-26614758,26614882-26615013,26615089-26615154,26615236-26615300,26615388-26615636,26615716-26615845	AT1G70580.4  CDS  gene_syn ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2, AOAT2, F5A18.24, F5A18_24, GGT2, GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2  gene AOAT2  function Similar to glutamate-glyoxylate transaminase enzyme encoded by AOAT1  go_component peroxisome|GO:0005777|12154131|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component peroxisome|GO:0005777|12631323|ISS  go_process photorespiration|GO:0009853||ISS  go_function L-alanine:2-oxoglutarate aminotransferase activity|GO:0004021||ISS  go_function glycine:2-oxoglutarate aminotransferase activity|GO:0047958|12631323|ISS  product AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2); L-alanine:2-oxoglutarate aminotransferase/ glycine:2-oxoglutarate aminotransferase  note ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2 (AOAT2); FUNCTIONS IN: glycine:2-oxoglutarate aminotransferase activity, L-alanine:2-oxoglutarate aminotransferase activity; INVOLVED IN: photorespiration; LOCATED IN: chloroplast, peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: GGT1 (GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE); L-alanine:2-oxoglutarate aminotransferase/ glycine:2-oxoglutarate aminotransferase (TAIR:AT1G23310.1); Has 16071 Blast hits to 16066 proteins in 1642 species: Archae - 440; Bacteria - 8897; Metazoa - 498; Fungi - 457; Plants - 855; Viruses - 0; Other Eukaryotes - 4924 (source: NCBI BLink).  protein_id AT1G70580.4p  transcript_id AT1G70580.4  protein_id AT1G70580.4p  transcript_id AT1G70580.4  
At1g70581	chr1:026616267	0.0	W/26616267-26616996	AT1G70581.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G70581.1  
At1g70590	chr1:026618403	0.0	W/26618403-26618961,26619134-26619267,26619622-26619804,26619980-26620159	AT1G70590.1  CDS  gene_syn F24J13.16, F24J13_16  go_component chloroplast|GO:0009507||IEA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: suppressor of lin-12-like protein-related / sel-1 protein-related (TAIR:AT1G18260.1); Has 9711 Blast hits to 4113 proteins in 766 species: Archae - 0; Bacteria - 6235; Metazoa - 421; Fungi - 482; Plants - 84; Viruses - 15; Other Eukaryotes - 2474 (source: NCBI BLink).  protein_id AT1G70590.1p  transcript_id AT1G70590.1  protein_id AT1G70590.1p  transcript_id AT1G70590.1  
At1g70600	chr1:026621168	0.0	C/26621168-26621608	AT1G70600.1  CDS  gene_syn F24J13.17, F24J13_17  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product structural constituent of ribosome  note structural constituent of ribosome; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, membrane; EXPRESSED IN: guard cell, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L15 (InterPro:IPR001196); BEST Arabidopsis thaliana protein match is: RPL27AB; structural constituent of ribosome (TAIR:AT1G23290.1); Has 825 Blast hits to 825 proteins in 317 species: Archae - 121; Bacteria - 11; Metazoa - 289; Fungi - 107; Plants - 96; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink).  protein_id AT1G70600.1p  transcript_id AT1G70600.1  protein_id AT1G70600.1p  transcript_id AT1G70600.1  
At1g70610	chr1:026622086	0.0	W/26622086-26622535,26622659-26622786,26622941-26622983,26623073-26623117,26623216-26623338,26623429-26623532,26623649-26623703,26623786-26623856,26624010-26624112,26624257-26624467,26624700-26624773,26625157-26625213,26625302-26625376,26625456-26625530,26625615-26625896,26625966-26626030,26626105-26626165,26626251-26626331	AT1G70610.1  CDS  gene_syn ATTAP1, F5A18.21, F5A18_21  gene ATTAP1  function member of TAP subfamily  go_component chloroplast|GO:0009507|18431481|IDA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ATTAP1; ATPase, coupled to transmembrane movement of substances / transporter  note ATTAP1; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATTAP2; ATPase, coupled to transmembrane movement of substances / transporter (TAIR:AT5G39040.1); Has 256752 Blast hits to 231157 proteins in 2647 species: Archae - 4451; Bacteria - 168510; Metazoa - 8859; Fungi - 5068; Plants - 2749; Viruses - 21; Other Eukaryotes - 67094 (source: NCBI BLink).  protein_id AT1G70610.1p  transcript_id AT1G70610.1  protein_id AT1G70610.1p  transcript_id AT1G70610.1  
At1g70620	chr1:026626634	0.0	W/26626634-26626999,26627075-26627129,26627196-26627512,26627775-26628053,26628133-26628315,26628385-26628573,26628679-26628753,26628831-26628897,26629002-26629962,26630062-26630163,26630247-26630307	AT1G70620.2  CDS  gene_syn F5A18.20, F5A18_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product cyclin-related  note cyclin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 85625 Blast hits to 44364 proteins in 1561 species: Archae - 73; Bacteria - 8385; Metazoa - 41465; Fungi - 11069; Plants - 8362; Viruses - 1216; Other Eukaryotes - 15055 (source: NCBI BLink).  protein_id AT1G70620.2p  transcript_id AT1G70620.2  protein_id AT1G70620.2p  transcript_id AT1G70620.2  
At1g70620	chr1:026626634	0.0	W/26626634-26626999,26627075-26627129,26627196-26627540,26627842-26628053,26628133-26628315,26628385-26628573,26628679-26628753,26628831-26628897,26629053-26629962,26630062-26630163,26630247-26630303,26630505-26630582,26630701-26630755	AT1G70620.1  CDS  gene_syn F5A18.20, F5A18_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product cyclin-related  note cyclin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 100267 Blast hits to 50982 proteins in 1689 species: Archae - 87; Bacteria - 8947; Metazoa - 49870; Fungi - 13313; Plants - 8874; Viruses - 1379; Other Eukaryotes - 17797 (source: NCBI BLink).  protein_id AT1G70620.1p  transcript_id AT1G70620.1  protein_id AT1G70620.1p  transcript_id AT1G70620.1  
At1g70630	chr1:026632118	0.0	W/26632118-26632342,26632437-26633168,26633257-26633503,26633582-26633991	AT1G70630.1  CDS  gene_syn F24J13.20, F24J13_20  go_component endoplasmic reticulum|GO:0005783||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35610.1); Has 221 Blast hits to 221 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 198; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G70630.1p  transcript_id AT1G70630.1  protein_id AT1G70630.1p  transcript_id AT1G70630.1  
At1g70640	chr1:026636255	0.0	W/26636255-26636393,26636502-26636887	AT1G70640.1  CDS  gene_syn F5A18.18, F5A18_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product octicosapeptide/Phox/Bem1p (PB1) domain-containing protein  note octicosapeptide/Phox/Bem1p (PB1) domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (TAIR:AT3G26510.4); Has 190 Blast hits to 190 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 190; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G70640.1p  transcript_id AT1G70640.1  protein_id AT1G70640.1p  transcript_id AT1G70640.1  
At1g70645	chr1:026638000	0.0	W/26638000-26638107	AT1G70645.1  miRNA  gene_syn MICRORNA777A, MIR777A  gene MIR777A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UACGCAUUGAGUUUCGUUGCU  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR777A (MICRORNA777A); miRNA  transcript_id AT1G70645.1  
At1g70650	chr1:026638158	0.0	W/26638158-26638438,26638594-26638711,26638849-26639174,26639268-26639402,26639488-26639586,26639685-26640126	AT1G70650.1  CDS  gene_syn F5A18.17, F5A18_17  go_component intracellular|GO:0005622||IEA  go_component mitochondrion|GO:0005739||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function binding|GO:0005488||ISS  product zinc finger (Ran-binding) family protein  note zinc finger (Ran-binding) family protein; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, intracellular; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: zinc finger (Ran-binding) family protein (TAIR:AT1G55040.1); Has 653 Blast hits to 497 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 257; Fungi - 56; Plants - 190; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).  protein_id AT1G70650.1p  transcript_id AT1G70650.1  protein_id AT1G70650.1p  transcript_id AT1G70650.1  
At1g70660	chr1:026640755	0.0	W/26640755-26640782,26640959-26641098,26641432-26641557,26641639-26641765,26641891-26641949	AT1G70660.1  CDS  gene_syn F5A18.16, F5A18_16, MMS ZWEI HOMOLOGE 2, MMZ2, UBIQUITIN E2 VARIANT 1B, UEV1B  gene MMZ2  function MMZ2/UEV1B encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1A can form diubiquitin and triubiquitin chains in combination with UBC13A/UBC35 in vitro. It can also functionally complement an mms2 mutation in budding yeast, both by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS, and by reducing the rate of spontaneous DNA mutation. However, a combination of MMZ2/UEV1B and UBC13A do not do a good job of rescuing an mms2 ubc13 double mutant in yeast. MMZ2/UEV1B transcripts are found in most plant organs, but not in the pollen or in seedlings 6 hours or 2 days post-germination. The transcript levels do not appear to be stress-inducible.  go_component UBC13-MMS2 complex|GO:0031372|18178771|IPI  go_process postreplication repair|GO:0006301|18178771|IGI  go_function ubiquitin-protein ligase activity|GO:0004842|18178771|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|18178771|IPI  product MMZ2 (MMS ZWEI HOMOLOGE 2); protein binding / ubiquitin-protein ligase  note MMS ZWEI HOMOLOGE 2 (MMZ2); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: postreplication repair; LOCATED IN: UBC13-MMS2 complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: MMZ1 (MMS ZWEI HOMOLOGUE 1); protein binding / ubiquitin-protein ligase (TAIR:AT1G23260.1); Has 2803 Blast hits to 2803 proteins in 225 species: Archae - 0; Bacteria - 0; Metazoa - 1615; Fungi - 350; Plants - 422; Viruses - 0; Other Eukaryotes - 416 (source: NCBI BLink).  protein_id AT1G70660.1p  transcript_id AT1G70660.1  protein_id AT1G70660.1p  transcript_id AT1G70660.1  
At1g70670	chr1:026644830	0.0	W/26644830-26644851,26644934-26645035,26645228-26645313,26645412-26645506,26645584-26645709,26645814-26645970	AT1G70670.1  CDS  gene_syn F5A18.15, F5A18_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product caleosin-related family protein  note caleosin-related family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: caleosin-related family protein (TAIR:AT1G70680.1); Has 227 Blast hits to 222 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 46; Plants - 178; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G70670.1p  transcript_id AT1G70670.1  protein_id AT1G70670.1p  transcript_id AT1G70670.1  
At1g70680	chr1:026647341	0.0	W/26647341-26647365,26647455-26647556,26647794-26647879,26647964-26648058,26648167-26648292,26648397-26648541	AT1G70680.1  CDS  gene_syn F5A18.14, F5A18_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product caleosin-related family protein  note caleosin-related family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: caleosin-related family protein (TAIR:AT1G70670.1); Has 228 Blast hits to 223 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 44; Plants - 181; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G70680.1p  transcript_id AT1G70680.1  protein_id AT1G70680.1p  transcript_id AT1G70680.1  
At1g70690	chr1:026652099	0.0	W/26652099-26652846,26653146-26653277,26653362-26653381	AT1G70690.1  CDS  gene_syn F5A18.13, F5A18_13, HOPW1-1-INDUCED GENE1, HWI1, PDLP5, PLASMODESMATA-LOCATED PROTEIN 5  gene HWI1  function Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.  go_component plasmodesma|GO:0009506|18215111|IDA  go_process defense response to bacterium|GO:0042742|18266921|IEP  go_process response to other organism|GO:0051707|16531493|IEP  product HWI1 (HOPW1-1-INDUCED GENE1)  note HOPW1-1-INDUCED GENE1 (HWI1); INVOLVED IN: response to other organism, defense response to bacterium; LOCATED IN: plasmodesma; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: PDLP6 (PLASMODESMATA-LOCATED PROTEIN 6) (TAIR:AT2G01660.1); Has 1007 Blast hits to 920 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1007; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G70690.1p  transcript_id AT1G70690.1  protein_id AT1G70690.1p  transcript_id AT1G70690.1  
At1g70700	chr1:026654951	0.0	W/26654951-26655041,26655250-26655332,26655827-26655981,26656070-26656154,26656238-26656320,26656393-26656478,26656574-26656628,26656711-26656804	AT1G70700.2  CDS  gene_syn F5A18.12, F5A18_12, JASMONATE-ZIM-DOMAIN PROTEIN 9, JAZ9, TIFY7  gene TIFY7  function JAZ9 is a protein presumed to be involved in jasmonate signaling. JAZ9 transcript levels rise in response to a jasmonate stimulus. JAZ9 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. The Jas domain appears to be important for JAZ9-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2.  go_component cellular_component|GO:0005575||ND  go_process response to jasmonic acid stimulus|GO:0009753|17637677|IEP  go_function molecular_function|GO:0003674||ND  product TIFY7  note TIFY7; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to jasmonic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: JAZ4 (JASMONATE-ZIM-DOMAIN PROTEIN 4) (TAIR:AT1G48500.1); Has 75 Blast hits to 75 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G70700.2p  transcript_id AT1G70700.2  protein_id AT1G70700.2p  transcript_id AT1G70700.2  
At1g70700	chr1:026654951	0.0	W/26654951-26655041,26655250-26655332,26655827-26655981,26656070-26656154,26656238-26656478,26656574-26656628,26656711-26656804	AT1G70700.1  CDS  gene_syn F5A18.12, F5A18_12, JASMONATE-ZIM-DOMAIN PROTEIN 9, JAZ9, TIFY7  gene TIFY7  function JAZ9 is a protein presumed to be involved in jasmonate signaling. JAZ9 transcript levels rise in response to a jasmonate stimulus. JAZ9 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. The Jas domain appears to be important for JAZ9-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2.  go_component cellular_component|GO:0005575||ND  go_process response to jasmonic acid stimulus|GO:0009753|17637677|IEP  go_function molecular_function|GO:0003674||ND  product TIFY7  note TIFY7; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to jasmonic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: JAZ4 (JASMONATE-ZIM-DOMAIN PROTEIN 4) (TAIR:AT1G48500.1); Has 73 Blast hits to 73 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G70700.1p  transcript_id AT1G70700.1  protein_id AT1G70700.1p  transcript_id AT1G70700.1  
At1g70710	chr1:026662756	0.0	C/26662756-26662962,26662265-26662672,26661792-26661884,26661531-26661692,26660135-26660246,26659804-26659967,26659356-26659688	AT1G70710.1  CDS  gene_syn ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B1, ATGH9B1, CEL1, CELLULASE 1, F5A18.11, F5A18_11  gene ATGH9B1  function endo-1,4-beta-glucanase. Involved in cell elongation.  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_process cell wall modification during multidimensional cell growth|GO:0042547|12602880|IMP  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function cellulase activity|GO:0008810|9290636|ISS  product ATGH9B1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B1); cellulase/ hydrolase, hydrolyzing O-glycosyl compounds  note ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B1 (ATGH9B1); FUNCTIONS IN: cellulase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: cell wall modification during multidimensional cell growth, response to cyclopentenone; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: AtGH9B6 (Arabidopsis thaliana glycosyl hydrolase 9B6); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G23210.1); Has 1114 Blast hits to 1108 proteins in 190 species: Archae - 0; Bacteria - 309; Metazoa - 139; Fungi - 14; Plants - 623; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G70710.1p  transcript_id AT1G70710.1  protein_id AT1G70710.1p  transcript_id AT1G70710.1  
At1g70720	chr1:026666427	0.0	W/26666427-26667029	AT1G70720.1  CDS  gene_syn F5A18.10, F5A18_10  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT1G23205.1); Has 428 Blast hits to 423 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 428; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G70720.1p  transcript_id AT1G70720.1  protein_id AT1G70720.1p  transcript_id AT1G70720.1  
At1g70730	chr1:026672646	0.0	C/26672646-26672726,26672344-26672425,26672193-26672248,26671926-26672039,26671744-26671806,26671478-26671597,26671275-26671375,26671086-26671145,26670884-26670983,26670597-26670757,26670407-26670502,26670205-26670268,26670036-26670117,26669778-26669956,26669613-26669689,26669397-26669529,26669188-26669304,26669020-26669091	AT1G70730.1  CDS  gene_syn F5A18.9, F5A18_9  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function magnesium ion binding|GO:0000287||IEA  go_function intramolecular transferase activity, phosphotransferases|GO:0016868||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function phosphoglucomutase activity|GO:0004614||ISS  product phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative  note phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative; FUNCTIONS IN: intramolecular transferase activity, phosphotransferases, magnesium ion binding, phosphoglucomutase activity; INVOLVED IN: response to cadmium ion, carbohydrate metabolic process; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-D-phosphohexomutase, conserved site (InterPro:IPR016066), Alpha-D-phosphohexomutase, C-terminal (InterPro:IPR005843), Alpha-D-phosphohexomutase, alpha/beta/alpha I, II and III (InterPro:IPR016055), Alpha-D-phosphohexomutase, alpha/beta/alpha domain III (InterPro:IPR005846), Alpha-D-phosphohexomutase, alpha/beta/alpha domain II (InterPro:IPR005845), Alpha-D-phosphohexomutase, N-terminal (InterPro:IPR005841), Alpha-D-phosphohexomutase, alpha/beta/alpha domain I (InterPro:IPR005844); BEST Arabidopsis thaliana protein match is: phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative (TAIR:AT1G23190.1); Has 4938 Blast hits to 4925 proteins in 1253 species: Archae - 65; Bacteria - 3275; Metazoa - 470; Fungi - 139; Plants - 117; Viruses - 0; Other Eukaryotes - 872 (source: NCBI BLink).  protein_id AT1G70730.1p  transcript_id AT1G70730.1  protein_id AT1G70730.1p  transcript_id AT1G70730.1  
At1g70730	chr1:026673092	0.0	C/26673092-26673166,26672646-26672711,26672344-26672425,26672193-26672248,26671926-26672039,26671744-26671806,26671478-26671597,26671275-26671375,26671086-26671145,26670884-26670983,26670597-26670757,26670407-26670502,26670205-26670268,26670036-26670117,26669778-26669956,26669613-26669689,26669397-26669529,26669188-26669304,26669020-26669091	AT1G70730.2  CDS  gene_syn F5A18.9, F5A18_9  go_function magnesium ion binding|GO:0000287||IEA  go_function intramolecular transferase activity, phosphotransferases|GO:0016868||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function phosphoglucomutase activity|GO:0004614||ISS  product phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative  note phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative; FUNCTIONS IN: intramolecular transferase activity, phosphotransferases, magnesium ion binding, phosphoglucomutase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-D-phosphohexomutase, C-terminal (InterPro:IPR005843), Alpha-D-phosphohexomutase, alpha/beta/alpha domain III (InterPro:IPR005846), Alpha-D-phosphohexomutase, conserved site (InterPro:IPR016066), Alpha-D-phosphohexomutase, alpha/beta/alpha domain II (InterPro:IPR005845), Alpha-D-phosphohexomutase, alpha/beta/alpha I, II and III (InterPro:IPR016055), Alpha-D-phosphohexomutase, N-terminal (InterPro:IPR005841), Alpha-D-phosphohexomutase, alpha/beta/alpha domain I (InterPro:IPR005844); BEST Arabidopsis thaliana protein match is: phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative (TAIR:AT1G23190.1).  protein_id AT1G70730.2p  transcript_id AT1G70730.2  protein_id AT1G70730.2p  transcript_id AT1G70730.2  
At1g70730	chr1:026673092	0.0	C/26673092-26673166,26672646-26672882,26672344-26672425,26672193-26672248,26671926-26672039,26671744-26671806,26671478-26671597,26671275-26671375,26671086-26671145,26670884-26670983,26670597-26670757,26670407-26670502,26670205-26670268,26670036-26670117,26669778-26669956,26669613-26669689,26669397-26669529,26669188-26669304,26669020-26669091	AT1G70730.3  CDS  gene_syn F5A18.9, F5A18_9  go_function magnesium ion binding|GO:0000287||IEA  go_function intramolecular transferase activity, phosphotransferases|GO:0016868||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function phosphoglucomutase activity|GO:0004614||ISS  product phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative  note phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative; FUNCTIONS IN: intramolecular transferase activity, phosphotransferases, magnesium ion binding, phosphoglucomutase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-D-phosphohexomutase, conserved site (InterPro:IPR016066), Alpha-D-phosphohexomutase, C-terminal (InterPro:IPR005843), Alpha-D-phosphohexomutase, alpha/beta/alpha I, II and III (InterPro:IPR016055), Alpha-D-phosphohexomutase, alpha/beta/alpha domain III (InterPro:IPR005846), Alpha-D-phosphohexomutase, alpha/beta/alpha domain II (InterPro:IPR005845), Alpha-D-phosphohexomutase, N-terminal (InterPro:IPR005841), Alpha-D-phosphohexomutase, alpha/beta/alpha domain I (InterPro:IPR005844); BEST Arabidopsis thaliana protein match is: phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative (TAIR:AT1G23190.1).  protein_id AT1G70730.3p  transcript_id AT1G70730.3  protein_id AT1G70730.3p  transcript_id AT1G70730.3  
At1g70740	chr1:026675588	0.0	C/26675588-26675687,26675370-26675503,26675032-26675242,26674698-26674932,26674411-26674561,26673847-26674293	AT1G70740.1  CDS  gene_syn F5A18.8, F5A18_8  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CRK10 (CYSTEINE-RICH RLK10); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT4G23180.1); Has 86069 Blast hits to 84907 proteins in 3211 species: Archae - 42; Bacteria - 7627; Metazoa - 38062; Fungi - 6586; Plants - 18690; Viruses - 390; Other Eukaryotes - 14672 (source: NCBI BLink).  protein_id AT1G70740.1p  transcript_id AT1G70740.1  protein_id AT1G70740.1p  transcript_id AT1G70740.1  
At1g70750	chr1:026682238	0.0	C/26682238-26683147,26682027-26682161,26680728-26681932	AT1G70750.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16720.1); Has 7394 Blast hits to 5449 proteins in 422 species: Archae - 51; Bacteria - 392; Metazoa - 3280; Fungi - 502; Plants - 431; Viruses - 68; Other Eukaryotes - 2670 (source: NCBI BLink).  protein_id AT1G70750.1p  transcript_id AT1G70750.1  protein_id AT1G70750.1p  transcript_id AT1G70750.1  
At1g70760	chr1:026687267	0.0	W/26687267-26687395,26687494-26687583,26687665-26687772,26687868-26687962,26688048-26688201	AT1G70760.1  CDS  gene_syn (chlororespiratory reduction 23, CRR23, F5A18.6, F5A18_6  gene CRR23  function a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity.  go_component NAD(P)H dehydrogenase complex (plastoquinone)|GO:0010598|18388109|ISS  go_component NAD(P)H dehydrogenase complex (plastoquinone)|GO:0010598|18388109|NAS  go_component thylakoid membrane|GO:0042651|18388109|IDA  go_process photosynthetic electron transport in photosystem I|GO:0009773|18388109|TAS  go_function molecular_function|GO:0003674||ND  product CRR23 ((chlororespiratory reduction 23)  note (chlororespiratory reduction 23 (CRR23); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: NAD(P)H dehydrogenase complex (plastoquinone), thylakoid membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 220 Blast hits to 220 proteins in 56 species: Archae - 0; Bacteria - 124; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT1G70760.1p  transcript_id AT1G70760.1  protein_id AT1G70760.1p  transcript_id AT1G70760.1  
At1g70770	chr1:026690709	0.0	C/26690709-26691185,26690471-26690608,26690189-26690377,26689953-26690090,26689734-26689852,26689516-26689648,26689302-26689431,26688991-26689217,26688622-26688903	AT1G70770.1  CDS  gene_syn F5A18.5, F5A18_5  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endoplasmic reticulum, nucleus, plasma membrane, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23170.1); Has 95 Blast hits to 95 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 63; Fungi - 3; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G70770.1p  transcript_id AT1G70770.1  protein_id AT1G70770.1p  transcript_id AT1G70770.1  
At1g70780	chr1:026695741	0.0	C/26695741-26695975,26695462-26695649	AT1G70780.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23150.1); Has 70 Blast hits to 70 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G70780.1p  transcript_id AT1G70780.1  protein_id AT1G70780.1p  transcript_id AT1G70780.1  
At1g70782	chr1:026696093	0.0	C/26696093-26696245	AT1G70782.1  CDS  gene_syn CPuORF28, Conserved peptide upstream open reading frame 28  gene CPuORF28  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF28 represents a conserved upstream opening reading frame relative to major ORF AT1G70780.1  product CPuORF28 (Conserved peptide upstream open reading frame 28)  note Conserved peptide upstream open reading frame 28 (CPuORF28); BEST Arabidopsis thaliana protein match is: CPuORF29 (Conserved peptide upstream open reading frame 29) (TAIR:AT1G23149.1); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G70782.1p  transcript_id AT1G70782.1  protein_id AT1G70782.1p  transcript_id AT1G70782.1  
At1g70790	chr1:026700724	0.0	W/26700724-26700837,26701525-26701620,26701703-26702006,26702084-26702127	AT1G70790.1  CDS  gene_syn F15H11.4, F15H11_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT2G01540.1); Has 3132 Blast hits to 2662 proteins in 186 species: Archae - 0; Bacteria - 0; Metazoa - 2035; Fungi - 335; Plants - 515; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).  protein_id AT1G70790.1p  transcript_id AT1G70790.1  protein_id AT1G70790.1p  transcript_id AT1G70790.1  
At1g70790	chr1:026700724	0.0	W/26700724-26700837,26701525-26701620,26701703-26702006,26702084-26702127	AT1G70790.2  CDS  gene_syn F15H11.4, F15H11_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT2G01540.1); Has 3132 Blast hits to 2662 proteins in 186 species: Archae - 0; Bacteria - 0; Metazoa - 2035; Fungi - 335; Plants - 515; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).  protein_id AT1G70790.2p  transcript_id AT1G70790.2  protein_id AT1G70790.2p  transcript_id AT1G70790.2  
At1g70800	chr1:026702757	0.0	W/26702757-26702894,26703157-26703252,26703360-26703650	AT1G70800.1  CDS  gene_syn F5A18.2, F5A18_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT1G70810.1); Has 1926 Blast hits to 1648 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 1186; Fungi - 163; Plants - 423; Viruses - 0; Other Eukaryotes - 154 (source: NCBI BLink).  protein_id AT1G70800.1p  transcript_id AT1G70800.1  protein_id AT1G70800.1p  transcript_id AT1G70800.1  
At1g70810	chr1:026704207	0.0	W/26704207-26704317,26704605-26704700,26704801-26705091	AT1G70810.1  CDS  gene_syn F15H11.6, F15H11_6  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT1G70800.1); Has 2193 Blast hits to 1879 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 1278; Fungi - 276; Plants - 448; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink).  protein_id AT1G70810.1p  transcript_id AT1G70810.1  protein_id AT1G70810.1p  transcript_id AT1G70810.1  
At1g70820	chr1:026705594	0.0	W/26705594-26706127,26706202-26706465,26706553-26706862,26706950-26707156,26707229-26707428,26707522-26707634,26707713-26707856,26707959-26708034	AT1G70820.1  CDS  gene_syn F15H11.7, F15H11_7  go_component chloroplast|GO:0009507|18431481|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function intramolecular transferase activity, phosphotransferases|GO:0016868||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function intramolecular transferase activity, phosphotransferases|GO:0016868||ISS  product phosphoglucomutase, putative / glucose phosphomutase, putative  note phosphoglucomutase, putative / glucose phosphomutase, putative; FUNCTIONS IN: intramolecular transferase activity, phosphotransferases; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-D-phosphohexomutase, alpha/beta/alpha domain II (InterPro:IPR005845), Alpha-D-phosphohexomutase, alpha/beta/alpha I, II and III (InterPro:IPR016055), Alpha-D-phosphohexomutase, N-terminal (InterPro:IPR005841), Alpha-D-phosphohexomutase, alpha/beta/alpha domain I (InterPro:IPR005844); BEST Arabidopsis thaliana protein match is: phosphoglucosamine mutase family protein (TAIR:AT5G17530.2); Has 11653 Blast hits to 11652 proteins in 1527 species: Archae - 265; Bacteria - 6288; Metazoa - 73; Fungi - 29; Plants - 33; Viruses - 0; Other Eukaryotes - 4965 (source: NCBI BLink).  protein_id AT1G70820.1p  transcript_id AT1G70820.1  protein_id AT1G70820.1p  transcript_id AT1G70820.1  
At1g70830	chr1:026711148	0.0	C/26711148-26711250,26710568-26711053,26710203-26710480	AT1G70830.4  CDS  gene_syn F15H11.8, F15H11_8, MLP-LIKE PROTEIN 28, MLP28  gene MLP28  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product MLP28 (MLP-LIKE PROTEIN 28)  note MLP-LIKE PROTEIN 28 (MLP28); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: MLP34 (MLP-LIKE PROTEIN 34) (TAIR:AT1G70850.3); Has 432 Blast hits to 237 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 430; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G70830.4p  transcript_id AT1G70830.4  protein_id AT1G70830.4p  transcript_id AT1G70830.4  
At1g70830	chr1:026711152	0.0	C/26711152-26711395,26710564-26711053,26710459-26710474	AT1G70830.2  CDS  gene_syn F15H11.8, F15H11_8, MLP-LIKE PROTEIN 28, MLP28  gene MLP28  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product MLP28 (MLP-LIKE PROTEIN 28)  note MLP-LIKE PROTEIN 28 (MLP28); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: MLP34 (MLP-LIKE PROTEIN 34) (TAIR:AT1G70850.2); Has 384 Blast hits to 257 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 384; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G70830.2p  transcript_id AT1G70830.2  protein_id AT1G70830.2p  transcript_id AT1G70830.2  
At1g70830	chr1:026711152	0.0	C/26711152-26711395,26710568-26711053,26710203-26710480	AT1G70830.1  CDS  gene_syn F15H11.8, F15H11_8, MLP-LIKE PROTEIN 28, MLP28  gene MLP28  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product MLP28 (MLP-LIKE PROTEIN 28)  note MLP-LIKE PROTEIN 28 (MLP28); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: MLP34 (MLP-LIKE PROTEIN 34) (TAIR:AT1G70850.3); Has 480 Blast hits to 259 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 478; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G70830.1p  transcript_id AT1G70830.1  protein_id AT1G70830.1p  transcript_id AT1G70830.1  
At1g70830	chr1:026711152	0.0	C/26711152-26711395,26710773-26711053,26710203-26710283	AT1G70830.3  CDS  gene_syn F15H11.8, F15H11_8, MLP-LIKE PROTEIN 28, MLP28  gene MLP28  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product MLP28 (MLP-LIKE PROTEIN 28)  note MLP-LIKE PROTEIN 28 (MLP28); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: MLP34 (MLP-LIKE PROTEIN 34) (TAIR:AT1G70850.3); Has 280 Blast hits to 257 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 280; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G70830.3p  transcript_id AT1G70830.3  protein_id AT1G70830.3p  transcript_id AT1G70830.3  
At1g70830	chr1:026711152	0.0	C/26711152-26711395,26710818-26711053,26710203-26710244	AT1G70830.5  CDS  gene_syn F15H11.8, F15H11_8, MLP-LIKE PROTEIN 28, MLP28  gene MLP28  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product MLP28 (MLP-LIKE PROTEIN 28)  note MLP-LIKE PROTEIN 28 (MLP28); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: MLP34 (MLP-LIKE PROTEIN 34) (TAIR:AT1G70850.3); Has 273 Blast hits to 250 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 273; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G70830.5p  transcript_id AT1G70830.5  protein_id AT1G70830.5p  transcript_id AT1G70830.5  
At1g70840	chr1:026713777	0.0	C/26713777-26714014,26713170-26713447	AT1G70840.1  CDS  gene_syn F15H11.9, F15H11_9, MLP-LIKE PROTEIN 31, MLP31  gene MLP31  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product MLP31 (MLP-LIKE PROTEIN 31)  note MLP-LIKE PROTEIN 31 (MLP31); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: MLP34 (MLP-LIKE PROTEIN 34) (TAIR:AT1G70850.3); Has 295 Blast hits to 272 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 295; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G70840.1p  transcript_id AT1G70840.1  protein_id AT1G70840.1p  transcript_id AT1G70840.1  
At1g70850	chr1:026716540	0.0	C/26716540-26716744,26715929-26716400,26715673-26715706	AT1G70850.2  CDS  gene_syn F15H11.10, F15H11_10, MLP-LIKE PROTEIN 34, MLP34  gene MLP34  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product MLP34 (MLP-LIKE PROTEIN 34)  note MLP-LIKE PROTEIN 34 (MLP34); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: MLP28 (MLP-LIKE PROTEIN 28) (TAIR:AT1G70830.2); Has 375 Blast hits to 245 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 375; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G70850.2p  transcript_id AT1G70850.2  protein_id AT1G70850.2p  transcript_id AT1G70850.2  
At1g70850	chr1:026716540	0.0	C/26716540-26716744,26715933-26716400,26715429-26715706	AT1G70850.1  CDS  gene_syn F15H11.10, F15H11_10, MLP-LIKE PROTEIN 34, MLP34  gene MLP34  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product MLP34 (MLP-LIKE PROTEIN 34)  note MLP-LIKE PROTEIN 34 (MLP34); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: MLP28 (MLP-LIKE PROTEIN 28) (TAIR:AT1G70830.1); Has 574 Blast hits to 342 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 574; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G70850.1p  transcript_id AT1G70850.1  protein_id AT1G70850.1p  transcript_id AT1G70850.1  
At1g70850	chr1:026716540	0.0	C/26716540-26716744,26715933-26716400,26715429-26715706	AT1G70850.3  CDS  gene_syn F15H11.10, F15H11_10, MLP-LIKE PROTEIN 34, MLP34  gene MLP34  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product MLP34 (MLP-LIKE PROTEIN 34)  note MLP-LIKE PROTEIN 34 (MLP34); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: MLP28 (MLP-LIKE PROTEIN 28) (TAIR:AT1G70830.1); Has 574 Blast hits to 342 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 574; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G70850.3p  transcript_id AT1G70850.3  protein_id AT1G70850.3p  transcript_id AT1G70850.3  
At1g70860	chr1:026718948	0.0	C/26718948-26718992,26718320-26718472	AT1G70860.1  CDS  gene_syn F15H11.31  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: Bet v I allergen family protein (TAIR:AT1G70880.1).  protein_id AT1G70860.1p  transcript_id AT1G70860.1  protein_id AT1G70860.1p  transcript_id AT1G70860.1  
At1g70870	chr1:026721465	0.0	C/26721465-26721563,26721369-26721420,26721020-26721288	AT1G70870.1  CDS  gene_syn F15H11.29, F15H11_29  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product major latex protein-related / MLP-related  note major latex protein-related / MLP-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: major latex protein-related / MLP-related (TAIR:AT1G23120.1); Has 231 Blast hits to 212 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 231; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G70870.1p  transcript_id AT1G70870.1  protein_id AT1G70870.1p  transcript_id AT1G70870.1  
At1g70880	chr1:026723516	0.0	C/26723516-26723717,26723086-26723363	AT1G70880.1  CDS  gene_syn F15H11.28, F15H11_28  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product Bet v I allergen family protein  note Bet v I allergen family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: MLP34 (MLP-LIKE PROTEIN 34) (TAIR:AT1G70850.3); Has 267 Blast hits to 244 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 267; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G70880.1p  transcript_id AT1G70880.1  protein_id AT1G70880.1p  transcript_id AT1G70880.1  
At1g70885	chr1:026724925	0.0	C/26724925-26725233	AT1G70885.1  pseudogenic_transcript  pseudo  gene_syn F15H11.11  note pseudogene, similar to major latex-like protein, blastp match of 64% identity and 7.2e-16 P-value to GP|13172242|gb|AAK14060.1|AF239177_1|AF239177 major latex-like protein {Prunus persica}  
At1g70890	chr1:026726291	0.0	C/26726291-26726489,26725912-26726189	AT1G70890.1  CDS  gene_syn F15H11.12, F15H11_12, MLP-LIKE PROTEIN 43, MLP43  gene MLP43  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_function molecular_function|GO:0003674||ND  product MLP43 (MLP-LIKE PROTEIN 43)  note MLP-LIKE PROTEIN 43 (MLP43); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: MLP28 (MLP-LIKE PROTEIN 28) (TAIR:AT1G70830.5); Has 263 Blast hits to 240 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 263; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G70890.1p  transcript_id AT1G70890.1  protein_id AT1G70890.1p  transcript_id AT1G70890.1  
At1g70895	chr1:026728170	0.0	W/26728170-26728469	AT1G70895.1  CDS  gene_syn CLAVATA3/ESR-RELATED 17, CLE17  gene CLE17  function Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.  go_component apoplast|GO:0048046|11457943|RCA  go_process signal transduction|GO:0007165||ISS  go_function receptor binding|GO:0005102||ISS  go_function protein binding|GO:0005515|11457943|ISS  product CLE17 (CLAVATA3/ESR-RELATED 17); protein binding / receptor binding  note CLAVATA3/ESR-RELATED 17 (CLE17); FUNCTIONS IN: protein binding, receptor binding; INVOLVED IN: signal transduction; LOCATED IN: apoplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G70895.1p  transcript_id AT1G70895.1  protein_id AT1G70895.1p  transcript_id AT1G70895.1  
At1g70895	chr1:026728170	0.0	W/26728170-26728469	AT1G70895.2  CDS  gene_syn CLAVATA3/ESR-RELATED 17, CLE17  gene CLE17  function Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.  go_component apoplast|GO:0048046|11457943|RCA  go_process signal transduction|GO:0007165||ISS  go_function receptor binding|GO:0005102||ISS  go_function protein binding|GO:0005515|11457943|ISS  product CLE17 (CLAVATA3/ESR-RELATED 17); protein binding / receptor binding  note CLAVATA3/ESR-RELATED 17 (CLE17); FUNCTIONS IN: protein binding, receptor binding; INVOLVED IN: signal transduction; LOCATED IN: apoplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G70895.2p  transcript_id AT1G70895.2  protein_id AT1G70895.2p  transcript_id AT1G70895.2  
At1g70900	chr1:026732456	0.0	W/26732456-26732610,26732701-26732756,26732852-26732930,26733027-26733165,26733242-26733355,26733446-26733637	AT1G70900.1  CDS  gene_syn F15H11.13, F15H11_13  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23110.3); Has 29 Blast hits to 29 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G70900.1p  transcript_id AT1G70900.1  protein_id AT1G70900.1p  transcript_id AT1G70900.1  
At1g70910	chr1:026734155	0.0	W/26734155-26734640	AT1G70910.1  CDS  gene_syn F15H11.25  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G57730.1); Has 2654 Blast hits to 2649 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 817; Fungi - 61; Plants - 1378; Viruses - 11; Other Eukaryotes - 387 (source: NCBI BLink).  protein_id AT1G70910.1p  transcript_id AT1G70910.1  protein_id AT1G70910.1p  transcript_id AT1G70910.1  
At1g70920	chr1:026736126	0.0	W/26736126-26736201,26736290-26736492,26736626-26736705,26738158-26738419	AT1G70920.1  CDS  gene_syn ATHB18, Arabidopsis thaliana homeobox-leucine zipper protein 18, F15H11.30  gene ATHB18  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ATHB18 (Arabidopsis thaliana homeobox-leucine zipper protein 18); DNA binding / transcription factor  note Arabidopsis thaliana homeobox-leucine zipper protein 18 (ATHB18); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: hypocotyl, flower, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ATHB17 (ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17); transcription factor (TAIR:AT2G01430.1); Has 10572 Blast hits to 10539 proteins in 525 species: Archae - 0; Bacteria - 0; Metazoa - 9143; Fungi - 133; Plants - 1100; Viruses - 5; Other Eukaryotes - 191 (source: NCBI BLink).  protein_id AT1G70920.1p  transcript_id AT1G70920.1  protein_id AT1G70920.1p  transcript_id AT1G70920.1  
At1g70940	chr1:026743170	0.0	W/26743170-26744400,26744476-26744779,26744860-26744945,26745382-26745539,26745625-26745701,26745805-26745871	AT1G70940.1  CDS  gene_syn F15H11.14, F15H11_14, PIN-FORMED 3, PIN3  gene PIN3  function A regulator of auxin efflux and involved in differential growth. PIN3 is expressed in gravity-sensing tissues, with PIN3 protein accumulating predominantly at the lateral cell surface. PIN3 localizes to the plasma membrane and to vesicles. In roots, PIN3 is expressed without pronounced polarity in tiers two and three of the columella cells, at the basal side of vascular cells, and to the lateral side of pericycle cells of the elongation zone. PIN3 overexpression inhibits root cell growth. Protein phosphorylation plays a role in PIN3 trafficking to the plasma membrane.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|11845211|IDA  go_component cell surface|GO:0009986|16731587|IDA  go_component vesicle membrane|GO:0012506|11845211|IDA  go_component lateral plasma membrane|GO:0016328|11845211|IDA  go_process pattern specification process|GO:0007389|15635403|IGI  go_process tropism|GO:0009606|11845211|IMP  go_process gravitropism|GO:0009630|16141452|TAS  go_process auxin polar transport|GO:0009926|11845211|IMP  go_process auxin polar transport|GO:0009926||ISS  go_process regulation of root meristem growth|GO:0010082|15635403|IGI  go_process root development|GO:0048364|15635403|IGI  go_process root hair initiation|GO:0048766|16731587|IMP  go_process root hair elongation|GO:0048767|16731587|IMP  go_function transporter activity|GO:0005215||ISS  go_function auxin:hydrogen symporter activity|GO:0009672||ISS  product PIN3 (PIN-FORMED 3); auxin:hydrogen symporter/ transporter  note PIN-FORMED 3 (PIN3); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity; INVOLVED IN: in 8 processes; LOCATED IN: lateral plasma membrane, plasma membrane, vesicle membrane, cell surface; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: PIN7 (PIN-FORMED 7); auxin efflux transmembrane transporter/ auxin:hydrogen symporter/ transporter (TAIR:AT1G23080.1); Has 1162 Blast hits to 1064 proteins in 320 species: Archae - 31; Bacteria - 626; Metazoa - 8; Fungi - 0; Plants - 252; Viruses - 0; Other Eukaryotes - 245 (source: NCBI BLink).  protein_id AT1G70940.1p  transcript_id AT1G70940.1  protein_id AT1G70940.1p  transcript_id AT1G70940.1  
At1g70944	chr1:026749137	0.0	C/26749137-26749253	AT1G70944.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G70944.1p  transcript_id AT1G70944.1  protein_id AT1G70944.1p  transcript_id AT1G70944.1  
At1g70949	chr1:026752401	0.0	C/26752401-26752664	AT1G70949.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G70949.1p  transcript_id AT1G70949.1  protein_id AT1G70949.1p  transcript_id AT1G70949.1  
At1g70950	chr1:026752779	0.0	W/26752779-26752820,26753226-26753840,26753922-26754100,26754199-26754288,26754360-26754456,26754536-26754607,26754712-26754819,26755009-26755242	AT1G70950.1  CDS  gene_syn F15H11.15, F15H11_15  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Targeting for Xklp2 (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23060.1); Has 875 Blast hits to 771 proteins in 143 species: Archae - 0; Bacteria - 102; Metazoa - 281; Fungi - 65; Plants - 205; Viruses - 3; Other Eukaryotes - 219 (source: NCBI BLink).  protein_id AT1G70950.1p  transcript_id AT1G70950.1  protein_id AT1G70950.1p  transcript_id AT1G70950.1  
At1g70960	chr1:026756253	0.0	W/26756253-26757362	AT1G70960.1  CDS  gene_syn F15H11.27, F15H11_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G70380.1); Has 733 Blast hits to 722 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 732; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G70960.1p  transcript_id AT1G70960.1  protein_id AT1G70960.1p  transcript_id AT1G70960.1  
At1g70970	chr1:026759834	0.0	W/26759834-26761042	AT1G70970.1  CDS  gene_syn F15H11.16, F15H11_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G70960.1); Has 623 Blast hits to 600 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 623; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G70970.1p  transcript_id AT1G70970.1  protein_id AT1G70970.1p  transcript_id AT1G70970.1  
At1g70980	chr1:026762339	0.0	W/26762339-26763418,26763504-26763763,26763841-26763973,26764071-26764129,26764211-26764394	AT1G70980.1  CDS  gene_syn F15H11.17, F15H11_17, SYNC3  gene SYNC3  go_component cytoplasm|GO:0005737||IEA  go_process translation|GO:0006412||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_process asparaginyl-tRNA aminoacylation|GO:0006421||IEA  go_process aspartyl-tRNA aminoacylation|GO:0006422||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function aspartate-tRNA ligase activity|GO:0004815||IEA  go_function asparagine-tRNA ligase activity|GO:0004816||IEA  go_function ATP binding|GO:0005524||IEA  product SYNC3; ATP binding / aminoacyl-tRNA ligase/ asparagine-tRNA ligase/ aspartate-tRNA ligase/ nucleic acid binding / nucleotide binding  note SYNC3; FUNCTIONS IN: in 6 functions; INVOLVED IN: asparaginyl-tRNA aminoacylation, aspartyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Asparaginyl-tRNA synthetase, class IIb (InterPro:IPR004522), WHEP-TRS (InterPro:IPR000738), Aminoacyl-tRNA synthetase, class II, conserved region (InterPro:IPR006195), Aspartyl-tRNA synthetase, class IIb (InterPro:IPR002312), Aminoacyl-tRNA synthetase, class II (D, K and N) (InterPro:IPR004364), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D, K and N)-like (InterPro:IPR018150); BEST Arabidopsis thaliana protein match is: SYNC1; ATP binding / aminoacyl-tRNA ligase/ asparagine-tRNA ligase/ aspartate-tRNA ligase/ nucleic acid binding / nucleotide binding (TAIR:AT5G56680.1); Has 10794 Blast hits to 8026 proteins in 1494 species: Archae - 413; Bacteria - 7139; Metazoa - 538; Fungi - 533; Plants - 135; Viruses - 0; Other Eukaryotes - 2036 (source: NCBI BLink).  protein_id AT1G70980.1p  transcript_id AT1G70980.1  protein_id AT1G70980.1p  transcript_id AT1G70980.1  
At1g70985	chr1:026764774	0.0	C/26764774-26765181	AT1G70985.1  CDS  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: cotyledon, leaf; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, LP.08 eight leaves visible; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G23050.1); Has 1360 Blast hits to 767 proteins in 140 species: Archae - 2; Bacteria - 103; Metazoa - 226; Fungi - 91; Plants - 854; Viruses - 15; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT1G70985.1p  transcript_id AT1G70985.1  protein_id AT1G70985.1p  transcript_id AT1G70985.1  
At1g70990	chr1:026767520	0.0	C/26767520-26768050	AT1G70990.1  CDS  gene_syn F15H11.18, F15H11_18  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product proline-rich family protein  note proline-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: shoot apex, inflorescence meristem, flower, root, leaf; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G23040.1); Has 16254 Blast hits to 6693 proteins in 482 species: Archae - 26; Bacteria - 1333; Metazoa - 5223; Fungi - 1282; Plants - 5139; Viruses - 1044; Other Eukaryotes - 2207 (source: NCBI BLink).  protein_id AT1G70990.1p  transcript_id AT1G70990.1  protein_id AT1G70990.1p  transcript_id AT1G70990.1  
At1g71000	chr1:026769925	0.0	C/26769925-26770111,26769770-26769834,26769611-26769667,26769336-26769524	AT1G71000.1  CDS  gene_syn F15H11.19, F15H11_19  go_function heat shock protein binding|GO:0031072||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product heat shock protein binding  note heat shock protein binding; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT1G56300.1); Has 15671 Blast hits to 15671 proteins in 1888 species: Archae - 109; Bacteria - 5307; Metazoa - 3237; Fungi - 1319; Plants - 1126; Viruses - 10; Other Eukaryotes - 4563 (source: NCBI BLink).  protein_id AT1G71000.1p  transcript_id AT1G71000.1  protein_id AT1G71000.1p  transcript_id AT1G71000.1  
At1g71002	chr1:026773539	0.0	C/26773539-26773725	AT1G71002.1  miRNA  gene_syn MICRORNA858A, MIR858A  gene MIR858A  function Encodes a microRNA that targets several MYB family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUUCGUUGUCUGUUCGACCUU  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR858A (MICRORNA858A); miRNA  transcript_id AT1G71002.1  
At1g71010	chr1:026782839	0.0	W/26782839-26783257,26783366-26784136,26784232-26784385,26784470-26784814,26784933-26785706,26785798-26786129,26786211-26786337,26786430-26786594,26786673-26788010,26788107-26788373,26788458-26788712	AT1G71010.1  CDS  gene_syn F23N20.21  go_process cellular protein metabolic process|GO:0044267||IEA  go_process phosphatidylinositol metabolic process|GO:0046488||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function phosphatidylinositol phosphate kinase activity|GO:0016307||IEA  go_component cellular_component|GO:0005575||ND  go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308||ISS  product phosphatidylinositol-4-phosphate 5-kinase family protein  note phosphatidylinositol-4-phosphate 5-kinase family protein; FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity, protein binding, phosphatidylinositol phosphate kinase activity, ATP binding; INVOLVED IN: phosphatidylinositol metabolic process, cellular protein metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: phosphatidylinositol-4-phosphate 5-kinase family protein (TAIR:AT3G14270.1); Has 3629 Blast hits to 3385 proteins in 315 species: Archae - 340; Bacteria - 3; Metazoa - 1461; Fungi - 695; Plants - 366; Viruses - 0; Other Eukaryotes - 764 (source: NCBI BLink).  protein_id AT1G71010.1p  transcript_id AT1G71010.1  protein_id AT1G71010.1p  transcript_id AT1G71010.1  
At1g71015	chr1:026789835	0.0	C/26789835-26790061,26789389-26789749	AT1G71015.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01340.1); Has 45 Blast hits to 45 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G71015.1p  transcript_id AT1G71015.1  protein_id AT1G71015.1p  transcript_id AT1G71015.1  
At1g71020	chr1:026792004	0.0	C/26792004-26792357,26790825-26791913	AT1G71020.2  CDS  gene_syn F23N20.1, F23N20_1  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  product armadillo/beta-catenin repeat family protein / U-box domain-containing protein  note armadillo/beta-catenin repeat family protein / U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein / U-box domain-containing protein (TAIR:AT1G23030.1); Has 3767 Blast hits to 2690 proteins in 218 species: Archae - 0; Bacteria - 16; Metazoa - 1065; Fungi - 415; Plants - 1807; Viruses - 3; Other Eukaryotes - 461 (source: NCBI BLink).  protein_id AT1G71020.2p  transcript_id AT1G71020.2  protein_id AT1G71020.2p  transcript_id AT1G71020.2  
At1g71020	chr1:026792812	0.0	C/26792812-26793105,26792482-26792598,26792004-26792390,26790825-26791913	AT1G71020.1  CDS  gene_syn F23N20.1, F23N20_1  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  product armadillo/beta-catenin repeat family protein / U-box domain-containing protein  note armadillo/beta-catenin repeat family protein / U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein / U-box domain-containing protein (TAIR:AT1G23030.1); Has 3784 Blast hits to 2707 proteins in 219 species: Archae - 0; Bacteria - 16; Metazoa - 1080; Fungi - 417; Plants - 1807; Viruses - 3; Other Eukaryotes - 461 (source: NCBI BLink).  protein_id AT1G71020.1p  transcript_id AT1G71020.1  protein_id AT1G71020.1p  transcript_id AT1G71020.1  
At1g71030	chr1:026796187	0.0	C/26796187-26796226,26795890-26796016,26795383-26795803	AT1G71030.1  CDS  gene_syn ARABIDOPSIS MYB-LIKE 2, ATMYBL2, F23N20.2, F23N20_2, MYBL2  gene MYBL2  function Encodes a putative myb family transcription factor. In contrast to most other myb-like proteins its myb domain consists of a single repeat. A proline-rich region potentially involved in transactivation is found in the C-terminal part of the protein. Its transcript accumulates mainly in leaves.  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to high light intensity|GO:0009644|18532977|IEP  go_process response to salt stress|GO:0009651|16463103|IEP  go_process anthocyanin biosynthetic process|GO:0009718|18532977|IMP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process proanthocyanidin biosynthetic process|GO:0010023|18532977|IMP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product MYBL2 (ARABIDOPSIS MYB-LIKE 2); DNA binding / transcription factor  note ARABIDOPSIS MYB-LIKE 2 (MYBL2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 11 processes; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB3 (MYB DOMAIN PROTEIN 3); DNA binding / transcription factor (TAIR:AT1G22640.1); Has 4755 Blast hits to 4665 proteins in 284 species: Archae - 0; Bacteria - 0; Metazoa - 308; Fungi - 92; Plants - 3515; Viruses - 3; Other Eukaryotes - 837 (source: NCBI BLink).  protein_id AT1G71030.1p  transcript_id AT1G71030.1  protein_id AT1G71030.1p  transcript_id AT1G71030.1  
At1g71040	chr1:026799988	0.0	C/26799988-26800224,26797736-26798860,26797336-26797665,26797201-26797254	AT1G71040.1  CDS  gene_syn F23N20.3, F23N20_3, LPR2, Low Phosphate Root2  gene LPR2  go_component cell wall|GO:0005618|15593128|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function copper ion binding|GO:0005507||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process cellular response to phosphate starvation|GO:0016036|17496893|IMP  go_function copper ion binding|GO:0005507||ISS  product LPR2 (Low Phosphate Root2); copper ion binding / oxidoreductase  note Low Phosphate Root2 (LPR2); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: cellular response to phosphate starvation; LOCATED IN: cell wall, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: LPR1 (Low Phosphate Root1); copper ion binding / oxidoreductase, acting on diphenols and related substances as donors, oxygen as acceptor (TAIR:AT1G23010.1); Has 1747 Blast hits to 1549 proteins in 452 species: Archae - 10; Bacteria - 1389; Metazoa - 14; Fungi - 58; Plants - 163; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).  protein_id AT1G71040.1p  transcript_id AT1G71040.1  protein_id AT1G71040.1p  transcript_id AT1G71040.1  
At1g71050	chr1:026803787	0.0	C/26803787-26803946,26803322-26803620	AT1G71050.1  CDS  gene_syn F23N20.4, F23N20_4  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related  note heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related (TAIR:AT1G22990.1); Has 726 Blast hits to 679 proteins in 41 species: Archae - 0; Bacteria - 10; Metazoa - 2; Fungi - 12; Plants - 702; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G71050.1p  transcript_id AT1G71050.1  protein_id AT1G71050.1p  transcript_id AT1G71050.1  
At1g71060	chr1:026805651	0.0	C/26805651-26807183	AT1G71060.1  CDS  gene_syn F23N20.5, F23N20_5  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G77360.1); Has 15233 Blast hits to 5042 proteins in 181 species: Archae - 3; Bacteria - 20; Metazoa - 330; Fungi - 294; Plants - 14002; Viruses - 0; Other Eukaryotes - 584 (source: NCBI BLink).  protein_id AT1G71060.1p  transcript_id AT1G71060.1  protein_id AT1G71060.1p  transcript_id AT1G71060.1  
At1g71070	chr1:026808672	0.0	C/26808672-26809152,26808244-26808319,26808045-26808160,26807440-26807954	AT1G71070.1  CDS  gene_syn F23N20.6, F23N20_6  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function acetylglucosaminyltransferase activity|GO:0008375||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein  note glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 14 (InterPro:IPR003406); BEST Arabidopsis thaliana protein match is: glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein (TAIR:AT5G39990.1); Has 699 Blast hits to 696 proteins in 86 species: Archae - 0; Bacteria - 16; Metazoa - 469; Fungi - 0; Plants - 190; Viruses - 14; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G71070.1p  transcript_id AT1G71070.1  protein_id AT1G71070.1p  transcript_id AT1G71070.1  
At1g71080	chr1:026811528	0.0	C/26811528-26811645,26811082-26811431,26810907-26810949,26809987-26810456	AT1G71080.1  CDS  gene_syn F23N20.7, F23N20_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38050.1); Has 12051 Blast hits to 3253 proteins in 341 species: Archae - 42; Bacteria - 6534; Metazoa - 2285; Fungi - 968; Plants - 112; Viruses - 41; Other Eukaryotes - 2069 (source: NCBI BLink).  protein_id AT1G71080.1p  transcript_id AT1G71080.1  protein_id AT1G71080.1p  transcript_id AT1G71080.1  
At1g71090	chr1:026812551	0.0	W/26812551-26813924	AT1G71090.1  CDS  gene_syn F23N20.8, F23N20_8  go_component integral to membrane|GO:0016021||IEA  go_process auxin polar transport|GO:0009926||ISS  go_function auxin:hydrogen symporter activity|GO:0009672||ISS  product auxin efflux carrier family protein  note auxin efflux carrier family protein; FUNCTIONS IN: auxin:hydrogen symporter activity; INVOLVED IN: auxin polar transport; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: auxin efflux carrier family protein (TAIR:AT5G01990.1); Has 433 Blast hits to 370 proteins in 101 species: Archae - 9; Bacteria - 33; Metazoa - 0; Fungi - 220; Plants - 97; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT1G71090.1p  transcript_id AT1G71090.1  protein_id AT1G71090.1p  transcript_id AT1G71090.1  
At1g71100	chr1:026814726	0.0	W/26814726-26815529	AT1G71100.1  CDS  gene_syn F23N20.9, F23N20_9, RADIAL SWELLING 10, RIBOSE 5-PHOSPHATE ISOMERASE, RPI, RSW10  gene RSW10  function Encodes a ribose 5-phosphate isomerase involved in the formation of uridine used for the synthesis of UDP-sugars. Mutants of this gene are affected in cellulose biosynthesis.  go_function ribose-5-phosphate isomerase activity|GO:0004751||IEA  go_component cytoplasm|GO:0005737|17059404|IDA  go_process cellulose biosynthetic process|GO:0030244|17059404|IMP  go_process uridine biosynthetic process|GO:0046109|17059404|IMP  product RSW10 (RADIAL SWELLING 10); ribose-5-phosphate isomerase  note RADIAL SWELLING 10 (RSW10); FUNCTIONS IN: ribose-5-phosphate isomerase activity; INVOLVED IN: uridine biosynthetic process, cellulose biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribose 5-phosphate isomerase (InterPro:IPR004788); BEST Arabidopsis thaliana protein match is: ribose-5-phosphate isomerase (TAIR:AT2G01290.1); Has 3160 Blast hits to 3160 proteins in 1122 species: Archae - 153; Bacteria - 1917; Metazoa - 91; Fungi - 101; Plants - 85; Viruses - 0; Other Eukaryotes - 813 (source: NCBI BLink).  protein_id AT1G71100.1p  transcript_id AT1G71100.1  protein_id AT1G71100.1p  transcript_id AT1G71100.1  
At1g71110	chr1:026818244	0.0	W/26818244-26818358,26818657-26818835,26818914-26819095,26819187-26819471,26819564-26819622,26819725-26819761,26819857-26819928,26820023-26820344,26820430-26820852	AT1G71110.1  CDS  gene_syn F23N20.10, F23N20_10  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G12400.1); Has 89 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G71110.1p  transcript_id AT1G71110.1  protein_id AT1G71110.1p  transcript_id AT1G71110.1  
At1g71120	chr1:026822174	0.0	C/26822174-26822420,26821935-26822074,26821395-26821860,26821072-26821307	AT1G71120.1  CDS  gene_syn F23N20.11, F23N20_11, GLIP6  gene GLIP6  function Contains lipase signature motif and GDSL domain.  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298|16126835|ISS  product GLIP6; carboxylesterase/ lipase  note GLIP6; FUNCTIONS IN: lipase activity, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GLIP7; carboxylesterase/ lipase (TAIR:AT5G15720.1); Has 1867 Blast hits to 1848 proteins in 183 species: Archae - 0; Bacteria - 276; Metazoa - 1; Fungi - 18; Plants - 1561; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G71120.1p  transcript_id AT1G71120.1  protein_id AT1G71120.1p  transcript_id AT1G71120.1  
At1g71130	chr1:026822877	0.0	W/26822877-26823362	AT1G71130.1  CDS  gene_syn F23N20.12, F23N20_12  function encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT1G22985.1); Has 3551 Blast hits to 3507 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3541; Viruses - 2; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G71130.1p  transcript_id AT1G71130.1  protein_id AT1G71130.1p  transcript_id AT1G71130.1  
At1g71140	chr1:026824762	0.0	W/26824762-26825004,26825084-26825628,26825711-26825797,26825890-26825946,26826030-26826268,26826350-26826555,26826668-26826748	AT1G71140.1  CDS  gene_syn F23N20.13, F23N20_13  go_component plasma membrane|GO:0005886|17151019|IDA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: drug transporter activity, antiporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G15170.1); Has 5458 Blast hits to 5403 proteins in 1063 species: Archae - 106; Bacteria - 3508; Metazoa - 123; Fungi - 208; Plants - 691; Viruses - 0; Other Eukaryotes - 822 (source: NCBI BLink).  protein_id AT1G71140.1p  transcript_id AT1G71140.1  protein_id AT1G71140.1p  transcript_id AT1G71140.1  
At1g71150	chr1:026827189	0.0	W/26827189-26827263,26827351-26827444,26827531-26827743,26827842-26828515	AT1G71150.1  CDS  gene_syn F23N20.14, F23N20_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22970.1); Has 77 Blast hits to 77 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 40; Fungi - 6; Plants - 27; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G71150.1p  transcript_id AT1G71150.1  protein_id AT1G71150.1p  transcript_id AT1G71150.1  
At1g71160	chr1:026828788	0.0	C/26828788-26830170	AT1G71160.1  CDS  gene_syn 3-KETOACYL-COA SYNTHASE 7, F23N20.15, F23N20_15, KCS7  gene KCS7  function Encodes KCS7, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_function catalytic activity|GO:0003824||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_process very-long-chain fatty acid metabolic process|GO:0000038|10330468|IDA  go_process cuticle development|GO:0042335|10330468|IDA  go_function acyltransferase activity|GO:0008415||ISS  product KCS7 (3-KETOACYL-COA SYNTHASE 7); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups  note 3-KETOACYL-COA SYNTHASE 7 (KCS7); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: very-long-chain fatty acid metabolic process, cuticle development; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038), Chalcone and stilbene synthases, C-terminal (InterPro:IPR012328); BEST Arabidopsis thaliana protein match is: KCS5 (3-KETOACYL-COA SYNTHASE 5); fatty acid elongase (TAIR:AT1G25450.1); Has 3429 Blast hits to 3418 proteins in 740 species: Archae - 1; Bacteria - 839; Metazoa - 0; Fungi - 24; Plants - 2437; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).  protein_id AT1G71160.1p  transcript_id AT1G71160.1  protein_id AT1G71160.1p  transcript_id AT1G71160.1  
At1g71170	chr1:026830673	0.0	W/26830673-26831572	AT1G71170.1  CDS  gene_syn F23N20.16, F23N20_16  go_process pentose-phosphate shunt|GO:0006098||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function phosphogluconate dehydrogenase (decarboxylating) activity|GO:0004616||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function coenzyme binding|GO:0050662||IEA  go_component cellular_component|GO:0005575||ND  go_process pentose-phosphate shunt|GO:0006098||ISS  go_function phosphogluconate dehydrogenase (decarboxylating) activity|GO:0004616||ISS  product 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein  note 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein; FUNCTIONS IN: coenzyme binding, oxidoreductase activity, binding, phosphogluconate dehydrogenase (decarboxylating) activity, catalytic activity; INVOLVED IN: pentose-phosphate shunt, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), Dehydrogenase, multihelical (InterPro:IPR013328), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), 3-hydroxyacid dehydrogenase/reductase (InterPro:IPR015815), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein (TAIR:AT1G71180.1); Has 10923 Blast hits to 10908 proteins in 1167 species: Archae - 86; Bacteria - 5485; Metazoa - 273; Fungi - 222; Plants - 147; Viruses - 0; Other Eukaryotes - 4710 (source: NCBI BLink).  protein_id AT1G71170.1p  transcript_id AT1G71170.1  protein_id AT1G71170.1p  transcript_id AT1G71170.1  
At1g71180	chr1:026832335	0.0	W/26832335-26833291	AT1G71180.1  CDS  gene_syn F23N20.17, F23N20_17  go_process pentose-phosphate shunt|GO:0006098||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function phosphogluconate dehydrogenase (decarboxylating) activity|GO:0004616||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function coenzyme binding|GO:0050662||IEA  go_component cellular_component|GO:0005575||ND  go_function phosphogluconate dehydrogenase (decarboxylating) activity|GO:0004616||ISS  product 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein  note 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein; FUNCTIONS IN: coenzyme binding, oxidoreductase activity, phosphogluconate dehydrogenase (decarboxylating) activity, binding, catalytic activity; INVOLVED IN: pentose-phosphate shunt, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), Dehydrogenase, multihelical (InterPro:IPR013328), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), 3-hydroxyacid dehydrogenase/reductase (InterPro:IPR015815), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein (TAIR:AT1G71170.1); Has 11516 Blast hits to 11502 proteins in 1232 species: Archae - 95; Bacteria - 5954; Metazoa - 292; Fungi - 240; Plants - 144; Viruses - 0; Other Eukaryotes - 4791 (source: NCBI BLink).  protein_id AT1G71180.1p  transcript_id AT1G71180.1  protein_id AT1G71180.1p  transcript_id AT1G71180.1  
At1g71190	chr1:026834856	0.0	C/26834856-26834982,26834657-26834759,26834464-26834584,26834252-26834373,26834045-26834166,26833780-26833939,26833597-26833687	AT1G71190.1  CDS  gene_syn F23N20.18, F23N20_18, SAG18, SENESCENCE ASSOCIATED GENE 18  gene SAG18  function Senescence associated gene (SAG). Expression induced by ozone. Encodes a plant-specific protein of unknown function. Based on a personal communication from David Meinke (08/21/2007), this gene is not allelic to TTN4, even though this has been stated previously in a publication.  go_component endomembrane system|GO:0012505||IEA  go_process senescence|GO:0010149|10444084|IEP  product SAG18 (SENESCENCE ASSOCIATED GENE 18)  note SENESCENCE ASSOCIATED GENE 18 (SAG18); INVOLVED IN: senescence; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11870.1); Has 121 Blast hits to 119 proteins in 40 species: Archae - 0; Bacteria - 65; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT1G71190.1p  transcript_id AT1G71190.1  protein_id AT1G71190.1p  transcript_id AT1G71190.1  
At1g71200	chr1:026837021	0.0	C/26837021-26837308,26836613-26836936,26835973-26836065	AT1G71200.1  CDS  gene_syn F23N20.19, F23N20_19  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product DNA binding / transcription factor  note DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BHLH038; DNA binding / transcription factor (TAIR:AT3G56970.1); Has 31 Blast hits to 31 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G71200.1p  transcript_id AT1G71200.1  protein_id AT1G71200.1p  transcript_id AT1G71200.1  
At1g71210	chr1:026838850	0.0	C/26838850-26841489	AT1G71210.1  CDS  gene_syn F23N20.20, F23N20_20  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G06920.1); Has 9675 Blast hits to 2848 proteins in 81 species: Archae - 1; Bacteria - 0; Metazoa - 25; Fungi - 30; Plants - 9428; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink).  protein_id AT1G71210.1p  transcript_id AT1G71210.1  protein_id AT1G71210.1p  transcript_id AT1G71210.1  
At1g71220	chr1:026841664	0.0	W/26841664-26841815,26841899-26842249,26842341-26842494,26842744-26842915,26843056-26843129,26843371-26843467,26843540-26843652,26843739-26843854,26844142-26844199,26844443-26844595,26844716-26844814,26844912-26845076,26845239-26845307,26845424-26845512,26845638-26845800,26846019-26846156,26846257-26846362,26846472-26846566,26846673-26846785,26846902-26847112,26847231-26847299,26847428-26847573,26847941-26848042,26848125-26848272,26848603-26848659,26848757-26848887,26849038-26849126,26849201-26849553,26849654-26849737,26849874-26849938,26850204-26850306,26850437-26850595,26850682-26850822,26850902-26850945,26851018-26851132,26851309-26851461,26851536-26851730	AT1G71220.1  CDS  gene_syn EBS1, EMS-mutagenized bri1 suppressor 1, F3I17.13, F3I17_13  gene EBS1  go_process protein amino acid glycosylation|GO:0006486||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum|GO:0005783||ISS  go_process protein amino acid glycosylation|GO:0006486||ISS  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function UDP-glucose:glycoprotein glucosyltransferase activity|GO:0003980||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product EBS1 (EMS-mutagenized bri1 suppressor 1); UDP-glucose:glycoprotein glucosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note EMS-mutagenized bri1 suppressor 1 (EBS1); FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups, UDP-glucose:glycoprotein glucosyltransferase activity; INVOLVED IN: carbohydrate biosynthetic process, protein amino acid glycosylation; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: guard cell, callus; CONTAINS InterPro DOMAIN/s: UDP-glucose:Glycoprotein Glucosyltransferase (InterPro:IPR009448); Has 509 Blast hits to 467 proteins in 142 species: Archae - 0; Bacteria - 54; Metazoa - 240; Fungi - 98; Plants - 23; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).  protein_id AT1G71220.1p  transcript_id AT1G71220.1  protein_id AT1G71220.1p  transcript_id AT1G71220.1  
At1g71230	chr1:026852560	0.0	W/26852560-26852949,26853060-26853341,26853413-26853560,26853665-26853750,26853993-26854070,26854163-26854255	AT1G71230.1  CDS  gene_syn AJH2, COP9-SIGNALOSOME 5B, CSN5, CSN5B, F3I17.12, F3I17_12  gene CSN5B  function Encodes a subunit of the COP9 complex, similar to JAB1, a specific mammalian coactivator of AP-1 transcription. Involved in protein deneddylation. Double mutants with CSN5A are constitutively photomorphogenic (de-etiolated) and have abnormal auxin responses.  go_component signalosome|GO:0008180|11019806|TAS  go_component signalosome|GO:0008180|9707402|IPI  go_process G2 phase of mitotic cell cycle|GO:0000085|18434413|IMP  go_process protein deneddylation|GO:0000338|15923347|IGI  go_process photomorphogenesis|GO:0009640|11019806|TAS  go_process response to auxin stimulus|GO:0009733|15923347|IGI  go_process negative regulation of photomorphogenesis|GO:0010100|15923347|IGI  go_process signalosome assembly|GO:0010387|17307927|IMP  go_function protein binding|GO:0005515|16844902|IPI  product CSN5B (COP9-SIGNALOSOME 5B); protein binding  note COP9-SIGNALOSOME 5B (CSN5B); FUNCTIONS IN: protein binding; INVOLVED IN: in 6 processes; LOCATED IN: signalosome; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: CSN5A (COP9 SIGNALOSOME 5A) (TAIR:AT1G22920.1); Has 926 Blast hits to 926 proteins in 181 species: Archae - 0; Bacteria - 4; Metazoa - 396; Fungi - 263; Plants - 128; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).  protein_id AT1G71230.1p  transcript_id AT1G71230.1  protein_id AT1G71230.1p  transcript_id AT1G71230.1  
At1g71235	chr1:026854559	0.0	W/26854559-26854805,26855023-26855222	AT1G71235.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G71235.1p  transcript_id AT1G71235.1  protein_id AT1G71235.1p  transcript_id AT1G71235.1  
At1g71240	chr1:026855489	0.0	W/26855489-26855681,26855767-26855998,26856087-26856237,26856332-26856439,26856633-26856796,26857127-26857292,26857538-26857674,26857789-26858467,26858678-26858790,26858982-26859237,26859324-26859599	AT1G71240.1  CDS  gene_syn F3I17.11, F3I17_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF639 (InterPro:IPR006927); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48840.1); Has 79 Blast hits to 76 proteins in 6 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G71240.1p  transcript_id AT1G71240.1  protein_id AT1G71240.1p  transcript_id AT1G71240.1  
At1g71240	chr1:026855489	0.0	W/26855489-26855681,26855767-26855998,26856090-26856237,26856332-26856439,26856633-26856796,26857127-26857292,26857538-26857674,26857789-26858467,26858678-26858790,26858982-26859237,26859324-26859599	AT1G71240.2  CDS  gene_syn F3I17.11, F3I17_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF639 (InterPro:IPR006927); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48840.1); Has 77 Blast hits to 74 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G71240.2p  transcript_id AT1G71240.2  protein_id AT1G71240.2p  transcript_id AT1G71240.2  
At1g71250	chr1:026860125	0.0	W/26860125-26860398,26860505-26860632,26860697-26860939,26861018-26861273,26861359-26861582	AT1G71250.1  CDS  gene_syn F3I17.10, F3I17_10  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function lipase activity|GO:0016298||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT5G08460.1); Has 1835 Blast hits to 1821 proteins in 173 species: Archae - 0; Bacteria - 242; Metazoa - 1; Fungi - 27; Plants - 1552; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G71250.1p  transcript_id AT1G71250.1  protein_id AT1G71250.1p  transcript_id AT1G71250.1  
At1g71260	chr1:026863360	0.0	C/26863360-26863391,26863168-26863271,26862990-26863093,26862804-26862896,26862621-26862715,26862464-26862537,26862167-26862255,26861849-26861974	AT1G71260.1  CDS  gene_syn A. THALIANA WHIRLY 2, ATWHY2, F3I17.9, F3I17_9  gene ATWHY2  function Encodes a homolog of the potato p24 protein. It shares the conserved KGKAAL domain, a putative DNA-binding domain, with potato p24 and is localized to mitochondria and not the nucleus.  go_component nucleus|GO:0005634|15967440|IDA  go_component mitochondrion|GO:0005739|15967440|IDA  go_process defense response|GO:0006952|15708347|TAS  go_function DNA binding|GO:0003677|15967440|ISS  product ATWHY2 (A. THALIANA WHIRLY 2); DNA binding  note A. THALIANA WHIRLY 2 (ATWHY2); FUNCTIONS IN: DNA binding; INVOLVED IN: defense response; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ssDNA-binding transcriptional regulator (InterPro:IPR009044), Plant transcription factor (InterPro:IPR013742); BEST Arabidopsis thaliana protein match is: WHY1 (WHIRLY 1); DNA binding / telomeric DNA binding (TAIR:AT1G14410.1); Has 57 Blast hits to 57 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G71260.1p  transcript_id AT1G71260.1  protein_id AT1G71260.1p  transcript_id AT1G71260.1  
At1g71270	chr1:026863736	0.0	W/26863736-26863762,26863863-26863957,26864058-26864115,26864288-26864383,26864520-26864621,26864777-26864860,26864947-26865027,26865425-26865568,26865969-26866060,26866348-26866429,26866713-26866895,26867362-26867477,26867567-26867625,26867866-26867966,26868339-26868389,26868640-26868819,26868910-26869044,26869196-26869270,26869372-26869429,26869513-26869817	AT1G71270.1  CDS  gene_syn ARABIDOPSIS THALIANA VPS52 HOMOLOG, ATVPS52, F3I17.8, F3I17_8, POK, POKY POLLEN TUBE, T-DNA TRANSMISSION DEFECT 8, TTD8  gene POK  function Encodes a homolog of the yeast Vps52p/SAC2. Involved in pollen tube germination and growth. Located in multiple endomembrane organelles including the golgi. The yeast protein has been shown to be located at the late Golgi and to function in a complex involved in retrograde trafficking of vesicles between the early endosomal compartment and the trans-Golgi network.  go_component Golgi membrane|GO:0000139|18583349|IDA  go_component Golgi apparatus|GO:0005794|15235115|IDA  go_component endomembrane system|GO:0012505|18583349|IDA  go_process pollen tube growth|GO:0009860|15235115|IMP  go_process sexual reproduction|GO:0019953|18583349|IMP  go_function molecular_function|GO:0003674||ND  product POK (POKY POLLEN TUBE)  note POKY POLLEN TUBE (POK); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: sexual reproduction, pollen tube growth; LOCATED IN: endomembrane system, Golgi apparatus, Golgi membrane; EXPRESSED IN: male gametophyte, flower, root, leaf; CONTAINS InterPro DOMAIN/s: Vps52/Sac2 (InterPro:IPR007258); BEST Arabidopsis thaliana protein match is: Vps52/Sac2 family protein (TAIR:AT1G71300.1); Has 645 Blast hits to 606 proteins in 161 species: Archae - 5; Bacteria - 33; Metazoa - 248; Fungi - 97; Plants - 42; Viruses - 2; Other Eukaryotes - 218 (source: NCBI BLink).  protein_id AT1G71270.1p  transcript_id AT1G71270.1  protein_id AT1G71270.1p  transcript_id AT1G71270.1  
At1g71280	chr1:026871880	0.0	C/26871880-26872152,26871726-26871813,26871414-26871700,26871161-26871240,26870876-26871086,26870690-26870796,26870262-26870613	AT1G71280.1  CDS  gene_syn F3I17.7, F3I17_7  go_function ATP-dependent helicase activity|GO:0008026||ISS  go_function poly(U) binding|GO:0008266|17511964|IDA  product DEAD/DEAH box helicase, putative  note DEAD/DEAH box helicase, putative; FUNCTIONS IN: poly(U) binding, ATP-dependent helicase activity; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (TAIR:AT1G71370.1); Has 21745 Blast hits to 21100 proteins in 1618 species: Archae - 185; Bacteria - 8065; Metazoa - 4627; Fungi - 2957; Plants - 1262; Viruses - 4; Other Eukaryotes - 4645 (source: NCBI BLink).  protein_id AT1G71280.1p  transcript_id AT1G71280.1  protein_id AT1G71280.1p  transcript_id AT1G71280.1  
At1g71290	chr1:026872643	0.0	W/26872643-26873242	AT1G71290.1  CDS  gene_syn F3I17.6, F3I17_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G70970.1); Has 274 Blast hits to 272 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 274; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G71290.1p  transcript_id AT1G71290.1  protein_id AT1G71290.1p  transcript_id AT1G71290.1  
At1g71300	chr1:026874064	0.0	W/26874064-26874149,26874290-26874347,26874469-26874582,26874694-26874795,26874872-26874955,26875066-26875146,26875238-26875381,26875503-26875594,26875664-26875745,26875887-26876069,26876241-26876356,26876445-26876503,26876653-26876753,26876842-26876892,26877075-26877254,26877348-26877482,26877654-26877728,26877879-26877936,26878015-26878319	AT1G71300.1  CDS  gene_syn F3I17.5, F3I17_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Vps52/Sac2 family protein  note Vps52/Sac2 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Vps52/Sac2 (InterPro:IPR007258); BEST Arabidopsis thaliana protein match is: POK (POKY POLLEN TUBE) (TAIR:AT1G71270.1); Has 466 Blast hits to 432 proteins in 142 species: Archae - 2; Bacteria - 5; Metazoa - 192; Fungi - 93; Plants - 31; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).  protein_id AT1G71300.1p  transcript_id AT1G71300.1  protein_id AT1G71300.1p  transcript_id AT1G71300.1  
At1g71310	chr1:026879591	0.0	C/26879591-26879844,26879469-26879506,26879179-26879384	AT1G71310.3  CDS  gene_syn F3I17.4, F3I17_4  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47870.1); Has 44 Blast hits to 44 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G71310.3p  transcript_id AT1G71310.3  protein_id AT1G71310.3p  transcript_id AT1G71310.3  
At1g71310	chr1:026879591	0.0	C/26879591-26879844,26879469-26879506,26879290-26879384,26878717-26878860	AT1G71310.1  CDS  gene_syn F3I17.4, F3I17_4  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47870.1); Has 62 Blast hits to 62 proteins in 12 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G71310.1p  transcript_id AT1G71310.1  protein_id AT1G71310.1p  transcript_id AT1G71310.1  
At1g71310	chr1:026879591	0.0	C/26879591-26879844,26879469-26879506,26879290-26879384,26878717-26878860	AT1G71310.2  CDS  gene_syn F3I17.4, F3I17_4  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47870.1); Has 62 Blast hits to 62 proteins in 12 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G71310.2p  transcript_id AT1G71310.2  protein_id AT1G71310.2p  transcript_id AT1G71310.2  
At1g71320	chr1:026882485	0.0	W/26882485-26882794,26882837-26883073,26883187-26883818	AT1G71320.1  CDS  gene_syn F3I17.3, F3I17_3  go_component cellular_component|GO:0005575||ND  product S locus F-box-related / SLF-related  note S locus F-box-related / SLF-related; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62350.1); Has 381 Blast hits to 373 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 379; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G71320.1p  transcript_id AT1G71320.1  protein_id AT1G71320.1p  transcript_id AT1G71320.1  
At1g71330	chr1:026884939	0.0	C/26884939-26885169,26884756-26884842,26884014-26884670	AT1G71330.1  CDS  gene_syn ATNAP5, F3I17.2, F3I17_2  gene ATNAP5  function member of NAP subfamily  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|11346655|ISS  product ATNAP5; ATPase, coupled to transmembrane movement of substances / transporter  note ATNAP5; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: transport; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATMRP3; ATPase, coupled to transmembrane movement of substances / chlorophyll catabolite transporter/ glutathione S-conjugate-exporting ATPase (TAIR:AT3G13080.4); Has 108316 Blast hits to 103988 proteins in 2291 species: Archae - 1796; Bacteria - 73518; Metazoa - 4949; Fungi - 2512; Plants - 1287; Viruses - 3; Other Eukaryotes - 24251 (source: NCBI BLink).  protein_id AT1G71330.1p  transcript_id AT1G71330.1  protein_id AT1G71330.1p  transcript_id AT1G71330.1  
At1g71340	chr1:026887055	0.0	C/26887055-26887321,26886871-26886968,26886706-26886766,26886535-26886615,26886341-26886433,26886005-26886094,26885804-26885931,26885556-26885724	AT1G71340.1  CDS  gene_syn F3I17.1, F3I17_1  go_process glycerol metabolic process|GO:0006071||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function phosphoric diester hydrolase activity|GO:0008081||IEA  go_function glycerophosphodiester phosphodiesterase activity|GO:0008889||IEA  go_component cellular_component|GO:0005575||ND  go_process glycerol metabolic process|GO:0006071||ISS  go_function glycerophosphodiester phosphodiesterase activity|GO:0008889||ISS  product glycerophosphoryl diester phosphodiesterase family protein  note glycerophosphoryl diester phosphodiesterase family protein; FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); Has 3353 Blast hits to 3349 proteins in 818 species: Archae - 63; Bacteria - 2463; Metazoa - 51; Fungi - 18; Plants - 21; Viruses - 12; Other Eukaryotes - 725 (source: NCBI BLink).  protein_id AT1G71340.1p  transcript_id AT1G71340.1  protein_id AT1G71340.1p  transcript_id AT1G71340.1  
At1g71350	chr1:026891075	0.0	C/26891075-26891209,26890626-26890928,26890448-26890542,26889981-26890361,26889670-26889778,26888741-26889389,26888525-26888646	AT1G71350.1  CDS  gene_syn F3I17.23, F3I17_23  go_process translational initiation|GO:0006413||IEA  go_function RNA binding|GO:0003723||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product eukaryotic translation initiation factor SUI1 family protein  note eukaryotic translation initiation factor SUI1 family protein; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PUA-like (InterPro:IPR015947), Translation initiation factor SUI1 (InterPro:IPR001950), SWIB/MDM2 (InterPro:IPR003121), PUA (InterPro:IPR002478), Uncharacterized domain 2 (InterPro:IPR004521); BEST Arabidopsis thaliana protein match is: pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein (TAIR:AT1G09150.1); Has 725 Blast hits to 708 proteins in 183 species: Archae - 44; Bacteria - 0; Metazoa - 290; Fungi - 223; Plants - 46; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT1G71350.1p  transcript_id AT1G71350.1  protein_id AT1G71350.1p  transcript_id AT1G71350.1  
At1g71360	chr1:026894004	0.0	C/26894004-26894166,26892214-26893841	AT1G71360.1  CDS  gene_syn F26A9.26, F26A9_26  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Sad1/UNC-like, C-terminal (InterPro:IPR012919), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22882.1); Has 9785 Blast hits to 6992 proteins in 496 species: Archae - 108; Bacteria - 691; Metazoa - 4011; Fungi - 621; Plants - 261; Viruses - 70; Other Eukaryotes - 4023 (source: NCBI BLink).  protein_id AT1G71360.1p  transcript_id AT1G71360.1  protein_id AT1G71360.1p  transcript_id AT1G71360.1  
At1g71370	chr1:026899112	0.0	C/26899112-26899381,26898587-26899045,26898425-26898504,26898131-26898350,26897867-26898055,26897663-26897769,26897235-26897586	AT1G71370.1  CDS  gene_syn F3I17.18, F3I17_18  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD/DEAH box helicase, putative  note DEAD/DEAH box helicase, putative; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (RH18) (TAIR:AT5G05450.1); Has 25899 Blast hits to 25220 proteins in 1685 species: Archae - 421; Bacteria - 10176; Metazoa - 4746; Fungi - 3207; Plants - 1312; Viruses - 8; Other Eukaryotes - 6029 (source: NCBI BLink).  protein_id AT1G71370.1p  transcript_id AT1G71370.1  protein_id AT1G71370.1p  transcript_id AT1G71370.1  
At1g71380	chr1:026901555	0.0	C/26901555-26901749,26900977-26901480,26900747-26900896,26900557-26900668,26899989-26900482	AT1G71380.1  CDS  gene_syn ARABIDOPSIS THALIANA CELLULASE 3, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, ATCEL3, ATGH9B3, F3I17.16, F3I17_16  gene ATCEL3  go_component cell wall|GO:0005618|14595688|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product ATCEL3 (ARABIDOPSIS THALIANA CELLULASE 3); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds  note ARABIDOPSIS THALIANA CELLULASE 3 (ATCEL3); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: CEL5 (CELLULASE 5); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G22880.1); Has 1088 Blast hits to 1084 proteins in 183 species: Archae - 0; Bacteria - 307; Metazoa - 123; Fungi - 14; Plants - 618; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G71380.1p  transcript_id AT1G71380.1  protein_id AT1G71380.1p  transcript_id AT1G71380.1  
At1g71390	chr1:026906453	0.0	W/26906453-26908807	AT1G71390.1  CDS  gene_syn AtRLP11, F3I17.31, F3I17_31, Receptor Like Protein 11  gene AtRLP11  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product AtRLP11 (Receptor Like Protein 11); protein binding  note Receptor Like Protein 11 (AtRLP11); FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP12 (Receptor Like Protein 12); protein binding (TAIR:AT1G71400.1); Has 71806 Blast hits to 21038 proteins in 860 species: Archae - 34; Bacteria - 5029; Metazoa - 22709; Fungi - 789; Plants - 37821; Viruses - 2; Other Eukaryotes - 5422 (source: NCBI BLink).  protein_id AT1G71390.1p  transcript_id AT1G71390.1  protein_id AT1G71390.1p  transcript_id AT1G71390.1  
At1g71400	chr1:026909905	0.0	W/26909905-26912448	AT1G71400.1  CDS  gene_syn AtRLP12, F3I17.30, F3I17_30, Receptor Like Protein 12  gene AtRLP12  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product AtRLP12 (Receptor Like Protein 12); protein binding  note Receptor Like Protein 12 (AtRLP12); FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210); BEST Arabidopsis thaliana protein match is: AtRLP11 (Receptor Like Protein 11); protein binding (TAIR:AT1G71390.1); Has 89617 Blast hits to 23857 proteins in 897 species: Archae - 42; Bacteria - 5268; Metazoa - 29992; Fungi - 1133; Plants - 46294; Viruses - 14; Other Eukaryotes - 6874 (source: NCBI BLink).  protein_id AT1G71400.1p  transcript_id AT1G71400.1  protein_id AT1G71400.1p  transcript_id AT1G71400.1  
At1g71410	chr1:026917024	0.0	C/26917024-26917515,26916830-26916934,26916643-26916750,26916366-26916548,26916081-26916207,26915920-26915981,26915716-26915802,26915526-26915612,26915321-26915434,26914842-26914970,26914609-26914671,26914305-26914466,26914066-26914184,26913070-26913961	AT1G71410.1  CDS  gene_syn F3I17.28, F3I17_28  go_component membrane|GO:0016020|17432890|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function binding|GO:0005488||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: binding, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Armadillo-type fold (InterPro:IPR016024), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G22870.1); Has 24054 Blast hits to 21915 proteins in 947 species: Archae - 6; Bacteria - 2246; Metazoa - 9018; Fungi - 3112; Plants - 2755; Viruses - 30; Other Eukaryotes - 6887 (source: NCBI BLink).  protein_id AT1G71410.1p  transcript_id AT1G71410.1  protein_id AT1G71410.1p  transcript_id AT1G71410.1  
At1g71420	chr1:026917822	0.0	C/26917822-26920059	AT1G71420.1  CDS  gene_syn F3I17.26, F3I17_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G09950.1); Has 12691 Blast hits to 4828 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 32; Fungi - 47; Plants - 12394; Viruses - 0; Other Eukaryotes - 218 (source: NCBI BLink).  protein_id AT1G71420.1p  transcript_id AT1G71420.1  protein_id AT1G71420.1p  transcript_id AT1G71420.1  
At1g71430	chr1:026920564	0.0	W/26920564-26921058	AT1G71430.1  CDS  gene_syn F3I17.24, F3I17_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 38 Blast hits to 38 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 2; Plants - 21; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G71430.1p  transcript_id AT1G71430.1  protein_id AT1G71430.1p  transcript_id AT1G71430.1  
At1g71440	chr1:026924064	0.0	C/26924064-26924373,26923811-26923981,26923651-26923697,26923424-26923570,26923251-26923325,26922941-26923050,26922713-26922831,26922580-26922641,26922336-26922443,26922223-26922257,26922073-26922138,26921821-26921912,26921665-26921741,26921488-26921565,26921271-26921369	AT1G71440.1  CDS  gene_syn F3I17.21, F3I17_21, PFI, PFIFFERLING, TFC E, TUBULIN-FOLDING COFACTOR E  gene PFI  function Encodes tubulin-folding cofactor E. Mutant embryos consist of one or a few grossly enlarged cells, surrounded by an endosperm that fails to cellularize and contains a few big nuclei.  go_component chloroplast|GO:0009507|18431481|IDA  go_process cytokinesis|GO:0000910|11959844|IGI  go_process tubulin complex assembly|GO:0007021|11959844|ISS  go_process embryonic development ending in seed dormancy|GO:0009793|10099932|IMP  product PFI (PFIFFERLING)  note PFIFFERLING (PFI); INVOLVED IN: embryonic development ending in seed dormancy, tubulin complex assembly, cytokinesis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytoskeleton-associated protein, CAP-Gly (InterPro:IPR000938); Has 5331 Blast hits to 4645 proteins in 331 species: Archae - 4; Bacteria - 1253; Metazoa - 2915; Fungi - 320; Plants - 421; Viruses - 0; Other Eukaryotes - 418 (source: NCBI BLink).  protein_id AT1G71440.1p  transcript_id AT1G71440.1  protein_id AT1G71440.1p  transcript_id AT1G71440.1  
At1g71450	chr1:026927088	0.0	W/26927088-26927639	AT1G71450.1  CDS  gene_syn F26A9.17  function encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT1G33760.1); Has 3873 Blast hits to 3733 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3867; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G71450.1p  transcript_id AT1G71450.1  protein_id AT1G71450.1p  transcript_id AT1G71450.1  
At1g71460	chr1:026928247	0.0	C/26928247-26930316	AT1G71460.1  CDS  gene_syn F26A9.16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: DOT4 (DEFECTIVELY ORGANIZED TRIBUTARIES 4) (TAIR:AT4G18750.1); Has 15216 Blast hits to 4384 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 51; Fungi - 23; Plants - 14963; Viruses - 0; Other Eukaryotes - 179 (source: NCBI BLink).  protein_id AT1G71460.1p  transcript_id AT1G71460.1  protein_id AT1G71460.1p  transcript_id AT1G71460.1  
At1g71470	chr1:026930786	0.0	W/26930786-26930924,26931157-26931413	AT1G71470.1  CDS  gene_syn F26A9.15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22090.1); Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G71470.1p  transcript_id AT1G71470.1  protein_id AT1G71470.1p  transcript_id AT1G71470.1  
At1g71470	chr1:026930786	0.0	W/26930786-26930924,26931166-26931413	AT1G71470.2  CDS  gene_syn F26A9.15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22090.1); Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G71470.2p  transcript_id AT1G71470.2  protein_id AT1G71470.2p  transcript_id AT1G71470.2  
At1g71480	chr1:026932079	0.0	W/26932079-26932417,26932507-26932621,26932702-26932783,26932878-26932929,26933024-26933086	AT1G71480.1  CDS  gene_syn F26A9.14  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process transport|GO:0006810||IEA  go_component intracellular|GO:0005622||ISS  go_component nucleus|GO:0005634||ISS  go_process protein import into nucleus|GO:0006606||ISS  go_function protein transporter activity|GO:0008565||ISS  product nuclear transport factor 2 (NTF2) family protein  note nuclear transport factor 2 (NTF2) family protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: transport, protein import into nucleus; LOCATED IN: chloroplast thylakoid membrane, nucleus, intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41470.1); Has 55 Blast hits to 55 proteins in 19 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G71480.1p  transcript_id AT1G71480.1  protein_id AT1G71480.1p  transcript_id AT1G71480.1  
At1g71490	chr1:026933326	0.0	C/26933326-26935371	AT1G71490.1  CDS  gene_syn F26A9.13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G22830.2); Has 14937 Blast hits to 4842 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 54; Fungi - 57; Plants - 14501; Viruses - 0; Other Eukaryotes - 325 (source: NCBI BLink).  protein_id AT1G71490.1p  transcript_id AT1G71490.1  protein_id AT1G71490.1p  transcript_id AT1G71490.1  
At1g71500	chr1:026936084	0.0	W/26936084-26936497,26936802-26937062,26937143-26937331	AT1G71500.1  CDS  gene_syn F26A9.12  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process oxidation reduction|GO:0055114||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function 2 iron, 2 sulfur cluster binding|GO:0051537||IEA  product Rieske (2Fe-2S) domain-containing protein  note Rieske (2Fe-2S) domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, 2 iron, 2 sulfur cluster binding; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Rieske [2Fe-2S] iron-sulphur domain (InterPro:IPR017941), Rieske [2Fe-2S] region (InterPro:IPR005806); Has 207 Blast hits to 207 proteins in 61 species: Archae - 0; Bacteria - 101; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT1G71500.1p  transcript_id AT1G71500.1  protein_id AT1G71500.1p  transcript_id AT1G71500.1  
At1g71520	chr1:026938612	0.0	W/26938612-26939043	AT1G71520.1  CDS  gene_syn F26A9.11  function encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to chitin|GO:0010200|17722694|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to chitin, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT1G22810.1); Has 3238 Blast hits to 3234 proteins in 174 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3234; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G71520.1p  transcript_id AT1G71520.1  protein_id AT1G71520.1p  transcript_id AT1G71520.1  
At1g71528	chr1:026939562	0.0	C/26939562-26942952	AT1G71528.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G71530  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G71528.1  
At1g71530	chr1:026939766	0.0	W/26939766-26940221,26940321-26940605,26940685-26941002,26941155-26941382,26941475-26941579	AT1G71530.1  CDS  gene_syn F26A9.10  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G33770.1); Has 90308 Blast hits to 89264 proteins in 3118 species: Archae - 44; Bacteria - 7740; Metazoa - 39791; Fungi - 8259; Plants - 17488; Viruses - 392; Other Eukaryotes - 16594 (source: NCBI BLink).  protein_id AT1G71530.1p  transcript_id AT1G71530.1  protein_id AT1G71530.1p  transcript_id AT1G71530.1  
At1g71530	chr1:026939766	0.0	W/26939766-26940221,26940321-26940605,26940685-26941002,26941155-26941382,26941475-26941579	AT1G71530.2  CDS  gene_syn F26A9.10  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G33770.1); Has 90308 Blast hits to 89264 proteins in 3118 species: Archae - 44; Bacteria - 7740; Metazoa - 39791; Fungi - 8259; Plants - 17488; Viruses - 392; Other Eukaryotes - 16594 (source: NCBI BLink).  protein_id AT1G71530.2p  transcript_id AT1G71530.2  protein_id AT1G71530.2p  transcript_id AT1G71530.2  
At1g71680	chr1:026944671	0.0	W/26944671-26944685,26944895-26945079,26945166-26945549,26945642-26946038,26946113-26946218,26946299-26946390,26946477-26946545,26946633-26946731	AT1G71680.1  CDS  gene_syn F14O23.2, F14O23_2  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product amino acid transmembrane transporter  note amino acid transmembrane transporter; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: membrane; EXPRESSED IN: leaf whorl, petal, flower, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: LHT2 (LYSINE HISTIDINE TRANSPORTER 2); acidic amino acid transmembrane transporter/ amino acid transmembrane transporter/ neutral amino acid transmembrane transporter (TAIR:AT1G24400.1); Has 2955 Blast hits to 2948 proteins in 200 species: Archae - 0; Bacteria - 37; Metazoa - 1148; Fungi - 476; Plants - 886; Viruses - 2; Other Eukaryotes - 406 (source: NCBI BLink).  protein_id AT1G71680.1p  transcript_id AT1G71680.1  protein_id AT1G71680.1p  transcript_id AT1G71680.1  
At1g71690	chr1:026947806	0.0	W/26947806-26948099,26948471-26949064	AT1G71690.1  CDS  gene_syn F14O23.3, F14O23_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579, plant (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09990.1); Has 162 Blast hits to 162 proteins in 12 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G71690.1p  transcript_id AT1G71690.1  protein_id AT1G71690.1p  transcript_id AT1G71690.1  
At1g71691	chr1:026951161	0.0	C/26951161-26951173,26950938-26951059,26950057-26950299,26949699-26949948,26949395-26949618	AT1G71691.1  CDS  gene_syn F14O23.4, F14O23_4  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT1G33811.1); Has 1596 Blast hits to 1584 proteins in 111 species: Archae - 0; Bacteria - 138; Metazoa - 1; Fungi - 19; Plants - 1423; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G71691.1p  transcript_id AT1G71691.1  protein_id AT1G71691.1p  transcript_id AT1G71691.1  
At1g71691	chr1:026951165	0.0	C/26951165-26951480,26950938-26951059,26950057-26950299,26949699-26949948,26949395-26949618	AT1G71691.2  CDS  gene_syn F14O23.4, F14O23_4  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT1G33811.1); Has 1894 Blast hits to 1879 proteins in 187 species: Archae - 0; Bacteria - 302; Metazoa - 1; Fungi - 24; Plants - 1546; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G71691.2p  transcript_id AT1G71691.2  protein_id AT1G71691.2p  transcript_id AT1G71691.2  
At1g71692	chr1:026954758	0.0	C/26954758-26954939,26954555-26954660,26953645-26953706,26953458-26953557,26953319-26953360,26953153-26953194,26952903-26953004	AT1G71692.1  CDS  gene_syn AGAMOUS-LIKE 12, AGL12, F14O23.5, F14O23_5, XAANTAL1, XAL1  gene AGL12  function Encodes a member of the MADS box family of transcription factors. Involved in root cell differentiation and flowering time. Loss of function mutations have abnormal cellular differentiation in the roots and are late flowering. AGL12 along with AGL14, and AGL17 is preferentially expressed in root tissues and represent the only characterized MADS box genes expressed in roots.  go_component nucleus|GO:0005634||IEA  go_process vegetative to reproductive phase transition|GO:0010228|18203871|IMP  go_process root development|GO:0048364|18203871|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL12 (AGAMOUS-LIKE 12); transcription factor  note AGAMOUS-LIKE 12 (AGL12); FUNCTIONS IN: transcription factor activity; INVOLVED IN: root development, vegetative to reproductive phase transition; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGL79 (AGAMOUS-LIKE 79); DNA binding / transcription factor (TAIR:AT3G30260.1); Has 4707 Blast hits to 4705 proteins in 640 species: Archae - 0; Bacteria - 0; Metazoa - 547; Fungi - 201; Plants - 3912; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G71692.1p  transcript_id AT1G71692.1  protein_id AT1G71692.1p  transcript_id AT1G71692.1  
At1g71695	chr1:026964359	0.0	W/26964359-26964625,26965591-26965785,26965943-26966557	AT1G71695.1  CDS  gene_syn F14O23.6, F14O23_6  go_component cell wall|GO:0005618|16287169|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase 12 (PER12) (P12) (PRXR6)  note peroxidase 12 (PER12) (P12) (PRXR6); FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: cell wall, vacuole, membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT4G08770.1); Has 2948 Blast hits to 2932 proteins in 213 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 154; Plants - 2760; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G71695.1p  transcript_id AT1G71695.1  protein_id AT1G71695.1p  transcript_id AT1G71695.1  
At1g71696	chr1:026966996	0.0	W/26966996-26967101,26967307-26967373,26967461-26967556,26967699-26967729,26967841-26967897,26968002-26968097,26968224-26968346,26968483-26968587,26968748-26968794,26968892-26969017,26969098-26969200,26969287-26969349,26969524-26969607,26969708-26969771,26970057-26970364	AT1G71696.2  CDS  gene_syn F14O23.7, F14O23_7, SOL1, SUPPRESSOR OF LLP1 1  gene SOL1  function Encodes a Putative Zn2+ carboxypeptidase, 4 splice variants have been identified but not characterized for different functions and/or expression patterns.SOL1 isolated as a suppressor of root- specific overexpression of CLE19, a clavata3 like gene. sol1 partially suppresses the short root phenotype caused by CLE19 overexpression.  go_component endomembrane system|GO:0012505||IEA  go_function carboxypeptidase activity|GO:0004180||IEA  go_function metallocarboxypeptidase activity|GO:0004181||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process regulation of root meristem growth|GO:0010082|12932329|IGI  product SOL1 (SUPPRESSOR OF LLP1 1); carboxypeptidase/ metallocarboxypeptidase/ zinc ion binding  note SUPPRESSOR OF LLP1 1 (SOL1); FUNCTIONS IN: metallocarboxypeptidase activity, carboxypeptidase activity, zinc ion binding; INVOLVED IN: regulation of root meristem growth; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Carboxypeptidase-like, regulatory region (InterPro:IPR008969), Peptidase M14, carboxypeptidase A (InterPro:IPR000834), Carboxypeptidase, regulatory region (InterPro:IPR014766); Has 1816 Blast hits to 1626 proteins in 244 species: Archae - 2; Bacteria - 395; Metazoa - 1048; Fungi - 23; Plants - 28; Viruses - 0; Other Eukaryotes - 320 (source: NCBI BLink).  protein_id AT1G71696.2p  transcript_id AT1G71696.2  protein_id AT1G71696.2p  transcript_id AT1G71696.2  
At1g71696	chr1:026967637	0.0	W/26967637-26967729,26967841-26967897,26968002-26968097,26968224-26968346,26968483-26968587,26968748-26968794,26968892-26969017,26969098-26969200,26969287-26969349,26969524-26969607,26969708-26969771,26970057-26970364	AT1G71696.1  CDS  gene_syn F14O23.7, F14O23_7, SOL1, SUPPRESSOR OF LLP1 1  gene SOL1  function Encodes a Putative Zn2+ carboxypeptidase, 4 splice variants have been identified but not characterized for different functions and/or expression patterns.SOL1 isolated as a suppressor of root- specific overexpression of CLE19, a clavata3 like gene. sol1 partially suppresses the short root phenotype caused by CLE19 overexpression.  go_component endomembrane system|GO:0012505||IEA  go_function carboxypeptidase activity|GO:0004180||IEA  go_function metallocarboxypeptidase activity|GO:0004181||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process regulation of root meristem growth|GO:0010082|12932329|IGI  product SOL1 (SUPPRESSOR OF LLP1 1); carboxypeptidase/ metallocarboxypeptidase/ zinc ion binding  note SUPPRESSOR OF LLP1 1 (SOL1); FUNCTIONS IN: metallocarboxypeptidase activity, carboxypeptidase activity, zinc ion binding; INVOLVED IN: regulation of root meristem growth; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Carboxypeptidase-like, regulatory region (InterPro:IPR008969), Peptidase M14, carboxypeptidase A (InterPro:IPR000834), Carboxypeptidase, regulatory region (InterPro:IPR014766); Has 1663 Blast hits to 1475 proteins in 229 species: Archae - 2; Bacteria - 364; Metazoa - 956; Fungi - 16; Plants - 27; Viruses - 0; Other Eukaryotes - 298 (source: NCBI BLink).  protein_id AT1G71696.1p  transcript_id AT1G71696.1  protein_id AT1G71696.1p  transcript_id AT1G71696.1  
At1g71697	chr1:026971537	0.0	W/26971537-26971896,26972060-26972181,26972261-26972456,26972533-26972650,26972749-26972796,26972878-26972978,26973082-26973177	AT1G71697.1  CDS  gene_syn ATCK1, CHOLINE KINASE, CHOLINE KINASE 1, CK, F14O23.8, F14O23_8  gene ATCK1  function Encodes choline kinase. mRNA levels are increased in response to wounding.  go_component cellular_component|GO:0005575||ND  go_process response to wounding|GO:0009611|9342878|IEP  go_process response to salt stress|GO:0009651|15147879|IEP  go_function choline kinase activity|GO:0004103|9342878|ISS  product ATCK1 (CHOLINE KINASE 1); choline kinase  note CHOLINE KINASE 1 (ATCK1); FUNCTIONS IN: choline kinase activity; INVOLVED IN: response to salt stress, response to wounding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Choline kinase, N-terminal (InterPro:IPR007521), Choline/ethanolamine kinase (InterPro:IPR002573), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: choline kinase, putative (TAIR:AT4G09760.2); Has 1107 Blast hits to 1061 proteins in 241 species: Archae - 0; Bacteria - 221; Metazoa - 386; Fungi - 161; Plants - 83; Viruses - 0; Other Eukaryotes - 256 (source: NCBI BLink).  protein_id AT1G71697.1p  transcript_id AT1G71697.1  protein_id AT1G71697.1p  transcript_id AT1G71697.1  
At1g71700	chr1:026973389	0.0	W/26973389-26973459	AT1G71700.1  tRNA  gene_syn 51794.TRNA-GLY-1, 60048.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: GCC)  transcript_id AT1G71700.1  
At1g71710	chr1:026976718	0.0	C/26976718-26976774,26976487-26976625,26976293-26976409,26976024-26976096,26975774-26975878,26974797-26975661,26974527-26974711,26974317-26974425,26973796-26974140	AT1G71710.1  CDS  gene_syn F14O23.9, F14O23_9  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function inositol-polyphosphate 5-phosphatase activity|GO:0004445||ISS  product inositol polyphosphate 5-phosphatase, putative  note inositol polyphosphate 5-phosphatase, putative; FUNCTIONS IN: inositol-polyphosphate 5-phosphatase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: IP5PI (INOSITOL POLYPHOSPHATE 5-PHOSPHATASE I); inositol trisphosphate phosphatase/ inositol-polyphosphate 5-phosphatase (TAIR:AT1G34120.2); Has 1835 Blast hits to 1396 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 784; Fungi - 433; Plants - 368; Viruses - 3; Other Eukaryotes - 247 (source: NCBI BLink).  protein_id AT1G71710.1p  transcript_id AT1G71710.1  protein_id AT1G71710.1p  transcript_id AT1G71710.1  
At1g71720	chr1:026983744	0.0	W/26983744-26984577,26984692-26984766,26984844-26984876,26985027-26985107,26985186-26985283,26985377-26985502,26985574-26985622,26985726-26985893	AT1G71720.1  CDS  gene_syn F14O23.10, F14O23_10  go_component chloroplast|GO:0009507||IEA  go_function RNA binding|GO:0003723||IEA  go_function RNA binding|GO:0003723||ISS  product S1 RNA-binding domain-containing protein  note S1 RNA-binding domain-containing protein; FUNCTIONS IN: RNA binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), S1, RNA binding (InterPro:IPR003029); BEST Arabidopsis thaliana protein match is: RPS1 (RIBOSOMAL PROTEIN S1); RNA binding / structural constituent of ribosome (TAIR:AT5G30510.1); Has 7326 Blast hits to 6616 proteins in 1329 species: Archae - 10; Bacteria - 4852; Metazoa - 33; Fungi - 10; Plants - 119; Viruses - 0; Other Eukaryotes - 2302 (source: NCBI BLink).  protein_id AT1G71720.1p  transcript_id AT1G71720.1  protein_id AT1G71720.1p  transcript_id AT1G71720.1  
At1g71730	chr1:026986298	0.0	C/26986298-26986831	AT1G71730.1  CDS  gene_syn F14O23.11, F14O23_11  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 32 Blast hits to 32 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G71730.1p  transcript_id AT1G71730.1  protein_id AT1G71730.1p  transcript_id AT1G71730.1  
At1g71740	chr1:026987245	0.0	W/26987245-26987637	AT1G71740.1  CDS  gene_syn F14O23.12, F14O23_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18560.1); Has 40 Blast hits to 40 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G71740.1p  transcript_id AT1G71740.1  protein_id AT1G71740.1p  transcript_id AT1G71740.1  
At1g71750	chr1:026988842	0.0	C/26988842-26989144,26988338-26988502,26987954-26988052	AT1G71750.1  CDS  gene_syn F14O23.13, F14O23_13  go_component cytoplasm|GO:0005737||IEA  go_process purine ribonucleoside salvage|GO:0006166||IEA  go_process nucleoside metabolic process|GO:0009116||IEA  go_function hypoxanthine phosphoribosyltransferase activity|GO:0004422||IEA  go_process nucleoside metabolic process|GO:0009116||ISS  go_function transferase activity|GO:0016740||ISS  product phosphoribosyltransferase family protein  note phosphoribosyltransferase family protein; FUNCTIONS IN: transferase activity, hypoxanthine phosphoribosyltransferase activity; INVOLVED IN: nucleoside metabolic process, purine ribonucleoside salvage; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836), Hypoxanthine phosphoribosyl transferase (InterPro:IPR005904); Has 3239 Blast hits to 3239 proteins in 1142 species: Archae - 35; Bacteria - 2162; Metazoa - 212; Fungi - 2; Plants - 19; Viruses - 0; Other Eukaryotes - 809 (source: NCBI BLink).  protein_id AT1G71750.1p  transcript_id AT1G71750.1  protein_id AT1G71750.1p  transcript_id AT1G71750.1  
At1g71760	chr1:026989414	0.0	W/26989414-26989467,26989561-26989867,26989946-26990119,26990255-26990499	AT1G71760.1  CDS  gene_syn F14O23.14, F14O23_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, leaf whorl, embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 67 Blast hits to 67 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G71760.1p  transcript_id AT1G71760.1  protein_id AT1G71760.1p  transcript_id AT1G71760.1  
At1g71760	chr1:026989414	0.0	W/26989414-26989467,26989561-26989867,26989946-26990170,26990255-26990499	AT1G71760.2  CDS  gene_syn F14O23.14, F14O23_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, leaf whorl, embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 59 Blast hits to 59 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G71760.2p  transcript_id AT1G71760.2  protein_id AT1G71760.2p  transcript_id AT1G71760.2  
At1g71770	chr1:026993156	0.0	C/26993156-26993447,26992205-26992986,26992032-26992109,26991848-26991937,26991427-26991747,26991106-26991318,26990777-26991007	AT1G71770.1  CDS  gene_syn F14O23.15, F14O23_15, PAB5, POLY(A)-BINDING PROTEIN, POLY(A)-BINDING PROTEIN 5  gene PAB5  function Encodes a Class I polyA-binding protein. Expressed in floral organs. Binds polyA sepharose in vitro.  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process nuclear-transcribed mRNA poly(A) tail shortening|GO:0000289|8776896|IGI  go_process translational initiation|GO:0006413|8776896|IGI  go_function RNA binding|GO:0003723||ISS  go_function translation initiation factor activity|GO:0003743||ISS  go_function poly(A) binding|GO:0008143|8341686|IDA  product PAB5 (POLY(A)-BINDING PROTEIN 5); RNA binding / poly(A) binding / translation initiation factor  note POLY(A)-BINDING PROTEIN 5 (PAB5); FUNCTIONS IN: RNA binding, poly(A) binding, translation initiation factor activity; INVOLVED IN: translational initiation, nuclear-transcribed mRNA poly(A) tail shortening; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Polyadenylate-binding protein/Hyperplastic disc protein (InterPro:IPR002004), RNA recognition motif, RNP-1 (InterPro:IPR000504), Polyadenylate binding protein, human types 1, 2, 3, 4 (InterPro:IPR006515), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: PAB3 (POLY(A) BINDING PROTEIN 3); RNA binding / translation initiation factor (TAIR:AT1G22760.1); Has 42827 Blast hits to 18663 proteins in 638 species: Archae - 24; Bacteria - 2063; Metazoa - 24869; Fungi - 4803; Plants - 6079; Viruses - 0; Other Eukaryotes - 4989 (source: NCBI BLink).  protein_id AT1G71770.1p  transcript_id AT1G71770.1  protein_id AT1G71770.1p  transcript_id AT1G71770.1  
At1g71780	chr1:026996255	0.0	C/26996255-26996638,26995406-26995615	AT1G71780.1  CDS  gene_syn F14O23.16, F14O23_16  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 21 Blast hits to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G71780.1p  transcript_id AT1G71780.1  protein_id AT1G71780.1p  transcript_id AT1G71780.1  
At1g71790	chr1:026996869	0.0	W/26996869-26996997,26997090-26997160,26997295-26997408,26997656-26997738,26997827-26997900,26998064-26998183,26998311-26998406,26998702-26998785	AT1G71790.1  CDS  gene_syn F14O23.17, F14O23_17  go_component cytoplasm|GO:0005737||IEA  go_component F-actin capping protein complex|GO:0008290||IEA  go_process actin cytoskeleton organization|GO:0030036||IEA  go_function actin binding|GO:0003779||IEA  go_component F-actin capping protein complex|GO:0008290||ISS  go_process actin cytoskeleton organization|GO:0030036||ISS  product F-actin capping protein beta subunit family protein  note F-actin capping protein beta subunit family protein; FUNCTIONS IN: actin binding; INVOLVED IN: actin cytoskeleton organization; LOCATED IN: F-actin capping protein complex, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: F-actin capping protein, beta subunit (InterPro:IPR001698); Has 348 Blast hits to 348 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 175; Fungi - 95; Plants - 20; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT1G71790.1p  transcript_id AT1G71790.1  protein_id AT1G71790.1p  transcript_id AT1G71790.1  
At1g71800	chr1:026999606	0.0	W/26999606-26999642,26999745-26999823,26999930-27000104,27000198-27000234,27000331-27000563,27000662-27000739,27000844-27000879,27000976-27001359,27001441-27001614,27001698-27001850	AT1G71800.1  CDS  gene_syn F14O23.18, F14O23_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  go_function protein binding|GO:0005515|16282318|IPI  product cleavage stimulation factor, putative  note cleavage stimulation factor, putative; FUNCTIONS IN: protein binding, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: ESP1 (ENHANCED SILENCING PHENOTYPE 1) (TAIR:AT1G73840.1); Has 16254 Blast hits to 14000 proteins in 623 species: Archae - 10; Bacteria - 1109; Metazoa - 8354; Fungi - 2096; Plants - 2802; Viruses - 0; Other Eukaryotes - 1883 (source: NCBI BLink).  protein_id AT1G71800.1p  transcript_id AT1G71800.1  protein_id AT1G71800.1p  transcript_id AT1G71800.1  
At1g71810	chr1:027007614	0.0	C/27007614-27007964,27007475-27007519,27007340-27007378,27007065-27007235,27006793-27006945,27006475-27006510,27006092-27006135,27005785-27005875,27005496-27005646,27004968-27005082,27004837-27004886,27004657-27004735,27004493-27004543,27004073-27004214,27003935-27003979,27003483-27003581,27003361-27003402,27003020-27003169,27002824-27002943,27002602-27002706	AT1G71810.1  CDS  gene_syn F14O23.19, F14O23_19  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_component plastoglobule|GO:0010287|16461379|IDA  product ABC1 family protein  note ABC1 family protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase, core (InterPro:IPR000719), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ABC1 family protein (TAIR:AT1G79600.1); Has 7549 Blast hits to 7535 proteins in 1105 species: Archae - 71; Bacteria - 2630; Metazoa - 356; Fungi - 312; Plants - 352; Viruses - 14; Other Eukaryotes - 3814 (source: NCBI BLink).  protein_id AT1G71810.1p  transcript_id AT1G71810.1  protein_id AT1G71810.1p  transcript_id AT1G71810.1  
At1g71820	chr1:027010022	0.0	W/27010022-27010150,27010344-27010382,27010469-27010557,27010645-27010735,27010906-27010995,27011101-27011171,27011423-27011515,27011933-27011959,27012355-27012462,27012659-27012794,27012888-27012932,27013272-27013327,27013437-27013545,27013874-27014014,27014115-27014294,27014636-27014719,27014806-27014892,27015070-27015114,27015297-27015375,27015694-27015763,27015850-27015937,27016030-27016119,27016215-27016331,27016411-27016473,27016614-27016745	AT1G71820.1  CDS  gene_syn F14O23.20, F14O23_20, SEC6  gene SEC6  go_component plasma membrane|GO:0005886|17644812|IDA  go_component exocyst|GO:0000145|18492870|IDA  go_process pollen germination|GO:0009846|18492870|IGI  go_process pollen tube growth|GO:0009860|18492870|IGI  go_function molecular_function|GO:0003674||ND  product SEC6  note SEC6; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen germination, pollen tube growth; LOCATED IN: plasma membrane, exocyst; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Exocyst complex component Sec6 (InterPro:IPR010326); Has 404 Blast hits to 404 proteins in 118 species: Archae - 3; Bacteria - 4; Metazoa - 222; Fungi - 97; Plants - 34; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT1G71820.1p  transcript_id AT1G71820.1  protein_id AT1G71820.1p  transcript_id AT1G71820.1  
At1g71828	chr1:027017801	0.0	C/27017801-27018315	AT1G71828.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G71830  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G71828.1  
At1g71830	chr1:027018575	0.0	W/27018575-27018662,27019091-27019223,27019309-27019380,27019498-27019641,27019745-27019816,27019912-27019983,27020067-27020179,27020310-27020441,27020600-27020941,27021047-27021441,27021528-27021842	AT1G71830.1  CDS  gene_syn ATSERK1, F14O23.21, F14O23_21, SERK1, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1  gene SERK1  function Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. later  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component plasma membrane|GO:0005886|11397085|IDA  go_component protein complex|GO:0043234|16473966|IPI  go_process protein amino acid phosphorylation|GO:0006468|15592873|IDA  go_process microsporogenesis|GO:0009556|16284305|IMP  go_process microsporogenesis|GO:0009556|18667726|IGI  go_process brassinosteroid mediated signaling|GO:0009742|18667726|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|11706164|IMP  go_process pollen maturation|GO:0010152|16284306|IMP  go_process protein amino acid autophosphorylation|GO:0046777|15592873|TAS  go_function transmembrane receptor protein serine/threonine kinase activity|GO:0004675|11509554|IDA  go_function kinase activity|GO:0016301||ISS  product SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1); kinase/ transmembrane receptor protein serine/threonine kinase  note SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1 (SERK1); FUNCTIONS IN: transmembrane receptor protein serine/threonine kinase activity, kinase activity; INVOLVED IN: in 6 processes; LOCATED IN: plasma membrane, protein complex; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2); kinase (TAIR:AT1G34210.1); Has 121134 Blast hits to 86414 proteins in 2954 species: Archae - 68; Bacteria - 9799; Metazoa - 39558; Fungi - 5951; Plants - 49874; Viruses - 383; Other Eukaryotes - 15501 (source: NCBI BLink).  protein_id AT1G71830.1p  transcript_id AT1G71830.1  protein_id AT1G71830.1p  transcript_id AT1G71830.1  
At1g71840	chr1:027022424	0.0	W/27022424-27022541,27022627-27022677,27022753-27022794,27022873-27023138,27023221-27023368,27023466-27023549,27023643-27023758,27023894-27024052,27024141-27024380	AT1G71840.1  CDS  gene_syn F14O23.22, F14O23_22  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: heterotrimeric G-protein complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), Quinoprotein amine dehydrogenase, beta chain-like (InterPro:IPR011044); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT4G02730.1); Has 67893 Blast hits to 26212 proteins in 696 species: Archae - 58; Bacteria - 6808; Metazoa - 32655; Fungi - 12563; Plants - 6168; Viruses - 0; Other Eukaryotes - 9641 (source: NCBI BLink).  protein_id AT1G71840.1p  transcript_id AT1G71840.1  protein_id AT1G71840.1p  transcript_id AT1G71840.1  
At1g71850	chr1:027024875	0.0	C/27024875-27026287	AT1G71850.1  CDS  gene_syn F14O23.23, F14O23_23  go_component intracellular|GO:0005622||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  product ubiquitin thiolesterase  note ubiquitin thiolesterase; FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (InterPro:IPR001578); BEST Arabidopsis thaliana protein match is: ubiquitin thiolesterase (TAIR:AT4G24320.1); Has 572 Blast hits to 554 proteins in 89 species: Archae - 0; Bacteria - 5; Metazoa - 60; Fungi - 83; Plants - 231; Viruses - 8; Other Eukaryotes - 185 (source: NCBI BLink).  protein_id AT1G71850.1p  transcript_id AT1G71850.1  protein_id AT1G71850.1p  transcript_id AT1G71850.1  
At1g71860	chr1:027026866	0.0	W/27026866-27027063,27027159-27027255,27027336-27027412,27027497-27027637,27027897-27028031,27028132-27028280,27028354-27028495,27028592-27028675	AT1G71860.1  CDS  gene_syn ATPTP1, F14O23.24, F14O23_24, PROTEIN TYROSINE PHOSPHATASE 1, PTP1  gene PTP1  function Encodes a protein with tyrosine phosphatase activity that is downregulated in response to cold and upregulated in response to salt stress.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process protein kinase cascade|GO:0007243|9596642|TAS  go_function protein tyrosine phosphatase activity|GO:0004725|9596642|IDA  product PTP1 (PROTEIN TYROSINE PHOSPHATASE 1); protein tyrosine phosphatase  note PROTEIN TYROSINE PHOSPHATASE 1 (PTP1); FUNCTIONS IN: protein tyrosine phosphatase activity; INVOLVED IN: protein kinase cascade; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Protein-tyrosine phosphatase (InterPro:IPR000387), Protein-tyrosine phosphatase, receptor/non-receptor type (InterPro:IPR000242); Has 5550 Blast hits to 4422 proteins in 212 species: Archae - 2; Bacteria - 65; Metazoa - 4816; Fungi - 212; Plants - 36; Viruses - 172; Other Eukaryotes - 247 (source: NCBI BLink).  protein_id AT1G71860.1p  transcript_id AT1G71860.1  protein_id AT1G71860.1p  transcript_id AT1G71860.1  
At1g71860	chr1:027026866	0.0	W/27026866-27027063,27027159-27027255,27027336-27027412,27027497-27027637,27027897-27028031,27028132-27028280,27028354-27028495,27028592-27028675	AT1G71860.3  CDS  gene_syn ATPTP1, F14O23.24, F14O23_24, PROTEIN TYROSINE PHOSPHATASE 1, PTP1  gene PTP1  function Encodes a protein with tyrosine phosphatase activity that is downregulated in response to cold and upregulated in response to salt stress.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process protein kinase cascade|GO:0007243|9596642|TAS  go_function protein tyrosine phosphatase activity|GO:0004725|9596642|IDA  product PTP1 (PROTEIN TYROSINE PHOSPHATASE 1); protein tyrosine phosphatase  note PROTEIN TYROSINE PHOSPHATASE 1 (PTP1); FUNCTIONS IN: protein tyrosine phosphatase activity; INVOLVED IN: protein kinase cascade; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Protein-tyrosine phosphatase (InterPro:IPR000387), Protein-tyrosine phosphatase, receptor/non-receptor type (InterPro:IPR000242); Has 5550 Blast hits to 4422 proteins in 212 species: Archae - 2; Bacteria - 65; Metazoa - 4816; Fungi - 212; Plants - 36; Viruses - 172; Other Eukaryotes - 247 (source: NCBI BLink).  protein_id AT1G71860.3p  transcript_id AT1G71860.3  protein_id AT1G71860.3p  transcript_id AT1G71860.3  
At1g71860	chr1:027026866	0.0	W/27026866-27027063,27027159-27027255,27027336-27027412,27027497-27027637,27027897-27028031,27028132-27028280,27028359-27028395	AT1G71860.2  CDS  gene_syn ATPTP1, F14O23.24, F14O23_24, PROTEIN TYROSINE PHOSPHATASE 1, PTP1  gene PTP1  function Encodes a protein with tyrosine phosphatase activity that is downregulated in response to cold and upregulated in response to salt stress.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process protein kinase cascade|GO:0007243|9596642|TAS  go_function protein tyrosine phosphatase activity|GO:0004725|9596642|IDA  product PTP1 (PROTEIN TYROSINE PHOSPHATASE 1); protein tyrosine phosphatase  note PROTEIN TYROSINE PHOSPHATASE 1 (PTP1); FUNCTIONS IN: protein tyrosine phosphatase activity; INVOLVED IN: protein kinase cascade; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, receptor/non-receptor type (InterPro:IPR000242); Has 5181 Blast hits to 4125 proteins in 187 species: Archae - 0; Bacteria - 2; Metazoa - 4595; Fungi - 193; Plants - 36; Viruses - 132; Other Eukaryotes - 223 (source: NCBI BLink).  protein_id AT1G71860.2p  transcript_id AT1G71860.2  protein_id AT1G71860.2p  transcript_id AT1G71860.2  
At1g71865	chr1:027030117	0.0	W/27030117-27030416	AT1G71865.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 15 Blast hits to 15 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G71865.1p  transcript_id AT1G71865.1  protein_id AT1G71865.1p  transcript_id AT1G71865.1  
At1g71870	chr1:027033912	0.0	C/27033912-27034895,27032456-27033004	AT1G71870.1  CDS  gene_syn F14O23.25, F14O23_25  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux protein-related (TAIR:AT4G29140.1); Has 5700 Blast hits to 5618 proteins in 1060 species: Archae - 110; Bacteria - 3727; Metazoa - 123; Fungi - 208; Plants - 678; Viruses - 0; Other Eukaryotes - 854 (source: NCBI BLink).  protein_id AT1G71870.1p  transcript_id AT1G71870.1  protein_id AT1G71870.1p  transcript_id AT1G71870.1  
At1g71880	chr1:027054334	0.0	W/27054334-27055593,27055680-27055743,27055883-27056100	AT1G71880.1  CDS  gene_syn ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 1, ATSUC1, F17M19.3, F17M19_3, SUC1, SUCROSE-H+ SYMPORTER, Sucrose-proton symporter 1  gene SUC1  function Sucrose transporter gene induced in response to nematodes; member of Sucrose-proton symporter family.  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|18359840|IDA  go_component plasma membrane|GO:0005886|7920705|NAS  go_component membrane|GO:0016020||ISS  go_process response to nematode|GO:0009624|16478044|IEP  go_process pollen germination|GO:0009846|18359840|IMP  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function sucrose:hydrogen symporter activity|GO:0008506|9307438|IDA  go_function sucrose:hydrogen symporter activity|GO:0008506||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product SUC1 (Sucrose-proton symporter 1); carbohydrate transmembrane transporter/ sucrose:hydrogen symporter/ sugar:hydrogen symporter  note Sucrose-proton symporter 1 (SUC1); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, sucrose:hydrogen symporter activity; INVOLVED IN: pollen germination, response to nematode; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sucrose/H+ symporter, plant (InterPro:IPR005989), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: SUC5; carbohydrate transmembrane transporter/ sucrose:hydrogen symporter/ sugar:hydrogen symporter (TAIR:AT1G71890.1); Has 1567 Blast hits to 1489 proteins in 322 species: Archae - 26; Bacteria - 450; Metazoa - 361; Fungi - 133; Plants - 250; Viruses - 0; Other Eukaryotes - 347 (source: NCBI BLink).  protein_id AT1G71880.1p  transcript_id AT1G71880.1  protein_id AT1G71880.1p  transcript_id AT1G71880.1  
At1g71890	chr1:027058492	0.0	W/27058492-27059748,27059837-27059900,27060356-27060573	AT1G71890.1  CDS  gene_syn ATSUC5, F17M19.4, F17M19_4, SUC5, SUCROSE-PROTON SYMPORTER 5  gene SUC5  function Encodes a sucrose transporter that is expressed in the endosperm. Mutants have delayed accumulation of fatty acids and embryo maturation.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component membrane|GO:0016020||ISS  go_process seed development|GO:0048316|16146522|IMP  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function sucrose:hydrogen symporter activity|GO:0008506||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product SUC5; carbohydrate transmembrane transporter/ sucrose:hydrogen symporter/ sugar:hydrogen symporter  note SUC5; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, sucrose:hydrogen symporter activity; INVOLVED IN: seed development; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sucrose/H+ symporter, plant (InterPro:IPR005989), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: SUC1 (Sucrose-proton symporter 1); carbohydrate transmembrane transporter/ sucrose:hydrogen symporter/ sugar:hydrogen symporter (TAIR:AT1G71880.1); Has 1501 Blast hits to 1406 proteins in 319 species: Archae - 24; Bacteria - 435; Metazoa - 366; Fungi - 133; Plants - 254; Viruses - 0; Other Eukaryotes - 289 (source: NCBI BLink).  protein_id AT1G71890.1p  transcript_id AT1G71890.1  protein_id AT1G71890.1p  transcript_id AT1G71890.1  
At1g71900	chr1:027061754	0.0	W/27061754-27061916,27062250-27062306,27062401-27062491,27062595-27062755,27062854-27062981,27063081-27063218,27063334-27063426,27063521-27063626,27063959-27064053	AT1G71900.1  CDS  gene_syn F17M19.5, F17M19_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF803 (InterPro:IPR008521); BEST Arabidopsis thaliana protein match is: permease-related (TAIR:AT1G34470.1); Has 875 Blast hits to 858 proteins in 150 species: Archae - 0; Bacteria - 55; Metazoa - 361; Fungi - 238; Plants - 146; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT1G71900.1p  transcript_id AT1G71900.1  protein_id AT1G71900.1p  transcript_id AT1G71900.1  
At1g71910	chr1:027065223	0.0	W/27065223-27065744	AT1G71910.1  CDS  gene_syn F17M19.6, F17M19_6  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G71910.1p  transcript_id AT1G71910.1  protein_id AT1G71910.1p  transcript_id AT1G71910.1  
At1g71920	chr1:027067168	0.0	W/27067168-27067401,27067506-27067589,27067706-27067860,27067943-27068040,27068146-27068254,27068345-27068502,27068584-27068999	AT1G71920.2  CDS  gene_syn F17M19.7, F17M19_7  go_component chloroplast|GO:0009507||IEA  go_process histidine biosynthetic process|GO:0000105||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function catalytic activity|GO:0003824||IEA  go_function histidinol-phosphate transaminase activity|GO:0004400||IEA  go_function transferase activity, transferring nitrogenous groups|GO:0016769||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_function histidinol-phosphate transaminase activity|GO:0004400||ISS  product histidinol-phosphate aminotransferase, putative  note histidinol-phosphate aminotransferase, putative; FUNCTIONS IN: pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, histidinol-phosphate transaminase activity, catalytic activity; INVOLVED IN: biosynthetic process, histidine biosynthetic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Histidinol-phosphate aminotransferase (InterPro:IPR005861), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1); histidinol-phosphate transaminase (TAIR:AT5G10330.2); Has 21881 Blast hits to 21881 proteins in 1644 species: Archae - 645; Bacteria - 13315; Metazoa - 220; Fungi - 246; Plants - 291; Viruses - 0; Other Eukaryotes - 7164 (source: NCBI BLink).  protein_id AT1G71920.2p  transcript_id AT1G71920.2  protein_id AT1G71920.2p  transcript_id AT1G71920.2  
At1g71920	chr1:027067168	0.0	W/27067168-27067401,27067506-27067593,27067716-27067860,27067943-27068040,27068146-27068254,27068345-27068502,27068584-27068999	AT1G71920.1  CDS  gene_syn F17M19.7, F17M19_7  go_component chloroplast|GO:0009507||IEA  go_process histidine biosynthetic process|GO:0000105||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function catalytic activity|GO:0003824||IEA  go_function histidinol-phosphate transaminase activity|GO:0004400||IEA  go_function transferase activity, transferring nitrogenous groups|GO:0016769||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_function histidinol-phosphate transaminase activity|GO:0004400||ISS  product histidinol-phosphate aminotransferase, putative  note histidinol-phosphate aminotransferase, putative; FUNCTIONS IN: transferase activity, transferring nitrogenous groups, pyridoxal phosphate binding, histidinol-phosphate transaminase activity, catalytic activity; INVOLVED IN: biosynthetic process, histidine biosynthetic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Histidinol-phosphate aminotransferase (InterPro:IPR005861), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1); histidinol-phosphate transaminase (TAIR:AT5G10330.2); Has 21562 Blast hits to 21562 proteins in 1642 species: Archae - 635; Bacteria - 13213; Metazoa - 213; Fungi - 244; Plants - 289; Viruses - 0; Other Eukaryotes - 6968 (source: NCBI BLink).  protein_id AT1G71920.1p  transcript_id AT1G71920.1  protein_id AT1G71920.1p  transcript_id AT1G71920.1  
At1g71920	chr1:027067333	0.0	W/27067333-27067401,27067506-27067589,27067706-27067860,27067943-27068040,27068146-27068254,27068345-27068502,27068584-27068999	AT1G71920.3  CDS  gene_syn F17M19.7, F17M19_7  go_process histidine biosynthetic process|GO:0000105||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function catalytic activity|GO:0003824||IEA  go_function histidinol-phosphate transaminase activity|GO:0004400||IEA  go_function transferase activity, transferring nitrogenous groups|GO:0016769||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_function histidinol-phosphate transaminase activity|GO:0004400||ISS  product histidinol-phosphate aminotransferase, putative  note histidinol-phosphate aminotransferase, putative; FUNCTIONS IN: transferase activity, transferring nitrogenous groups, pyridoxal phosphate binding, histidinol-phosphate transaminase activity, catalytic activity; INVOLVED IN: biosynthetic process, histidine biosynthetic process; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Histidinol-phosphate aminotransferase (InterPro:IPR005861), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1); histidinol-phosphate transaminase (TAIR:AT5G10330.3).  protein_id AT1G71920.3p  transcript_id AT1G71920.3  protein_id AT1G71920.3p  transcript_id AT1G71920.3  
At1g71930	chr1:027076205	0.0	W/27076205-27076370,27076786-27077057,27077293-27077829	AT1G71930.1  CDS  gene_syn ANAC030, ARABIDOPSIS NAC-DOMAIN PROTEIN 030, F17M19.8, F17M19_8, VASCULAR RELATED NAC-DOMAIN PROTEIN 7, VND7  gene VND7  function Encodes a NAC-domain transcription factor with transcriptional activation activity that is involved in xylem formation. Induces transdifferentiation of various cells into protoxylem vessel elements. Located in the nucleus. Expression induced in the presence of auxin, cytokinin and brassinosteroids.  go_component nucleus|GO:0005634|16103214|IDA  go_component nucleus|GO:0005634|16581911|IDA  go_process multicellular organismal development|GO:0007275||ISS  go_process response to cytokinin stimulus|GO:0009735|16103214|IEP  go_process response to abscisic acid stimulus|GO:0009737|16103214|IEP  go_process response to brassinosteroid stimulus|GO:0009741|16103214|IEP  go_process xylem histogenesis|GO:0010089|16103214|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|18445131|IDA  go_function transcription activator activity|GO:0016563|18952777|IDA  go_function transcription regulator activity|GO:0030528|16103214|TAS  product VND7 (VASCULAR RELATED NAC-DOMAIN PROTEIN 7); transcription activator/ transcription factor/ transcription regulator  note VASCULAR RELATED NAC-DOMAIN PROTEIN 7 (VND7); FUNCTIONS IN: transcription factor activity, transcription regulator activity, transcription activator activity; INVOLVED IN: multicellular organismal development, xylem histogenesis, response to brassinosteroid stimulus, response to abscisic acid stimulus, response to cytokinin stimulus; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: VND1 (VASCULAR RELATED NAC-DOMAIN PROTEIN 1); transcription factor (TAIR:AT2G18060.1); Has 1629 Blast hits to 1627 proteins in 64 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1614; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G71930.1p  transcript_id AT1G71930.1  protein_id AT1G71930.1p  transcript_id AT1G71930.1  
At1g71940	chr1:027078781	0.0	W/27078781-27079025,27079149-27079419,27079506-27079676,27079817-27079948	AT1G71940.1  CDS  gene_syn F17M19.9, F17M19_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09580.1); Has 2462 Blast hits to 2462 proteins in 530 species: Archae - 4; Bacteria - 1186; Metazoa - 194; Fungi - 22; Plants - 141; Viruses - 0; Other Eukaryotes - 915 (source: NCBI BLink).  protein_id AT1G71940.1p  transcript_id AT1G71940.1  protein_id AT1G71940.1p  transcript_id AT1G71940.1  
At1g71950	chr1:027081347	0.0	C/27081347-27081573,27080980-27081077,27080453-27080538	AT1G71950.1  CDS  gene_syn F17M19.10, F17M19_10  go_component plasma membrane|GO:0005886|14506206|IDA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  product identical protein binding / serine-type endopeptidase  note identical protein binding / serine-type endopeptidase; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: negative regulation of catalytic activity; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor, propeptide (InterPro:IPR009020), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259), Peptidase S8, subtilisin-related (InterPro:IPR015500); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT1G32950.1); Has 441 Blast hits to 438 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 441; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G71950.1p  transcript_id AT1G71950.1  protein_id AT1G71950.1p  transcript_id AT1G71950.1  
At1g71960	chr1:027088041	0.0	C/27088041-27088163,27087069-27087909,27083343-27083680,27082587-27083273	AT1G71960.1  CDS  gene_syn F17M19.11, F17M19_11  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ABC transporter family protein  note ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 (InterPro:IPR000412), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT1G31770.1); Has 233955 Blast hits to 213141 proteins in 2643 species: Archae - 4195; Bacteria - 160534; Metazoa - 7681; Fungi - 4566; Plants - 2723; Viruses - 13; Other Eukaryotes - 54243 (source: NCBI BLink).  protein_id AT1G71960.1p  transcript_id AT1G71960.1  protein_id AT1G71960.1p  transcript_id AT1G71960.1  
At1g71970	chr1:027093099	0.0	W/27093099-27093776	AT1G71970.1  CDS  gene_syn F17M19.12, F17M19_12  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22680.1); Has 38 Blast hits to 38 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G71970.1p  transcript_id AT1G71970.1  protein_id AT1G71970.1p  transcript_id AT1G71970.1  
At1g71980	chr1:027098250	0.0	W/27098250-27098370,27098483-27098713,27098786-27099190,27099292-27099881	AT1G71980.1  CDS  gene_syn F17M19.13, F17M19_13  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function peptidase activity|GO:0008233||ISS  go_function zinc ion binding|GO:0008270||ISS  product protease-associated zinc finger (C3HC4-type RING finger) family protein  note protease-associated zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: peptidase activity, protein binding, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: peptidase/ protein binding / zinc ion binding (TAIR:AT4G09560.1); Has 12967 Blast hits to 6609 proteins in 295 species: Archae - 0; Bacteria - 161; Metazoa - 3033; Fungi - 861; Plants - 2686; Viruses - 28; Other Eukaryotes - 6198 (source: NCBI BLink).  protein_id AT1G71980.1p  transcript_id AT1G71980.1  protein_id AT1G71980.1p  transcript_id AT1G71980.1  
At1g71990	chr1:027100345	0.0	W/27100345-27100809,27101274-27101447,27101531-27102097	AT1G71990.1  CDS  gene_syn ATFUT13, F17M19.14, F17M19_14, FT4-M, FUCOSYLTRANSFERASE 13, FUCTC, FUT13  gene FUT13  function This gene encodes a Lewis-type alpha 1,4-fucosyltransferase  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process Lewis a epitope biosynthetic process|GO:0010493|17630273|IDA  go_function fucosyltransferase activity|GO:0008417|11420147|ISS  go_function fucosyltransferase activity|GO:0008417|11743104|ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product FUT13 (FUCOSYLTRANSFERASE 13); fucosyltransferase/ transferase, transferring glycosyl groups  note FUCOSYLTRANSFERASE 13 (FUT13); FUNCTIONS IN: transferase activity, transferring glycosyl groups, fucosyltransferase activity; INVOLVED IN: Lewis a epitope biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 10 (InterPro:IPR001503), Alpha-(1, 3)-fucosyltransferase/alpha-(1, 4)-fucosyltransferase, plant (InterPro:IPR017177); BEST Arabidopsis thaliana protein match is: FUT11 (FUCOSYLTRANSFERASE 11); 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase/ fucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT3G19280.1); Has 1250 Blast hits to 1246 proteins in 134 species: Archae - 2; Bacteria - 91; Metazoa - 895; Fungi - 0; Plants - 81; Viruses - 3; Other Eukaryotes - 178 (source: NCBI BLink).  protein_id AT1G71990.1p  transcript_id AT1G71990.1  protein_id AT1G71990.1p  transcript_id AT1G71990.1  
At1g72000	chr1:027103277	0.0	W/27103277-27103492,27103685-27104116,27104306-27104864,27105371-27105663	AT1G72000.1  CDS  gene_syn F28P5.11, F28P5_11  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function beta-fructofuranosidase activity|GO:0004564||ISS  product beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative  note beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative; FUNCTIONS IN: catalytic activity, beta-fructofuranosidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Plant neutral invertase (InterPro:IPR006937), Six-hairpin glycosidase-like (InterPro:IPR008928); BEST Arabidopsis thaliana protein match is: beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative (TAIR:AT1G22650.1); Has 525 Blast hits to 524 proteins in 78 species: Archae - 0; Bacteria - 106; Metazoa - 0; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 246 (source: NCBI BLink).  protein_id AT1G72000.1p  transcript_id AT1G72000.1  protein_id AT1G72000.1p  transcript_id AT1G72000.1  
At1g72010	chr1:027107844	0.0	W/27107844-27108971	AT1G72010.1  CDS  gene_syn F28P5.10, F28P5_10  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product TCP family transcription factor, putative  note TCP family transcription factor, putative; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor, putative (TAIR:AT1G35560.1); Has 296 Blast hits to 293 proteins in 60 species: Archae - 0; Bacteria - 6; Metazoa - 9; Fungi - 5; Plants - 272; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G72010.1p  transcript_id AT1G72010.1  protein_id AT1G72010.1p  transcript_id AT1G72010.1  
At1g72020	chr1:027110255	0.0	C/27110255-27110327,27109521-27109741	AT1G72020.1  CDS  gene_syn F28P5.9, F28P5_9  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 34 Blast hits to 34 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G72020.1p  transcript_id AT1G72020.1  protein_id AT1G72020.1p  transcript_id AT1G72020.1  
At1g72030	chr1:027110887	0.0	W/27110887-27111216,27111304-27111356,27111438-27111825	AT1G72030.1  CDS  gene_syn F28P5.8, F28P5_8  go_process metabolic process|GO:0008152||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_process metabolic process|GO:0008152||ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product GCN5-related N-acetyltransferase (GNAT) family protein  note GCN5-related N-acetyltransferase (GNAT) family protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 112 Blast hits to 112 proteins in 36 species: Archae - 0; Bacteria - 47; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G72030.1p  transcript_id AT1G72030.1  protein_id AT1G72030.1p  transcript_id AT1G72030.1  
At1g72040	chr1:027113613	0.0	C/27113613-27114248,27113060-27113518,27112598-27112975,27112448-27112515,27112159-27112360	AT1G72040.1  CDS  gene_syn F28P5.7, F28P5_7  go_component nucleus|GO:0005634|14617066|IDA  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_function ATP binding|GO:0005524||IEA  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||ISS  go_function ATP binding|GO:0005524||ISS  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||ISS  product deoxynucleoside kinase family  note deoxynucleoside kinase family; FUNCTIONS IN: phosphotransferase activity, alcohol group as acceptor, ATP binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Deoxynucleoside kinase (InterPro:IPR002624); Has 1720 Blast hits to 1716 proteins in 345 species: Archae - 0; Bacteria - 621; Metazoa - 410; Fungi - 0; Plants - 41; Viruses - 60; Other Eukaryotes - 588 (source: NCBI BLink).  protein_id AT1G72040.1p  transcript_id AT1G72040.1  protein_id AT1G72040.1p  transcript_id AT1G72040.1  
At1g72050	chr1:027115082	0.0	W/27115082-27115213,27115351-27115491,27115915-27116359,27116522-27116757,27116858-27117001,27117088-27117228	AT1G72050.2  CDS  gene_syn F28P5.6, F28P5_6, TFIIIA, TRANSCRIPTION FACTOR IIIA  gene TFIIIA  function Encodes a transcriptional factor TFIIIA required for transcription of 5S rRNA gene. 5S rRNA is the smallest constituent of the ribosome. Work on one of the gene models AT1G72050.2 showed that it encodes a protein with nine Cys(2)-His(2)-type zinc fingers, a characteristic feature of TFIIIA proteins. AT1G72050.2 also contains a 23 amino acid spacer between fingers 1 and 2, a 66 amino acid spacer between fingers 4 and 5, and a 50 amino acid non-finger C-terminal tail. in vitro assay demonstrated that AT1g72050.2 binds to 5S rDNA and efficiently stimulates the transcription of 5S rRNA. AT1g72050.2 also binds to 5S rRNA in vitro. AT1g72050.2 is located at several nuclear foci including the nucleolus and is absent from the cytoplasm.  go_component nucleus|GO:0005634|12711688|IDA  go_component nucleolus|GO:0005730|12711688|IDA  go_component cytoplasm|GO:0005737|12711688|IDA  go_function transcription factor activity|GO:0003700|12711688|IDA  go_function 5S rRNA binding|GO:0008097|12711688|IDA  go_function 5S rDNA binding|GO:0080084|12711688|IDA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function zinc ion binding|GO:0008270||ISS  product TFIIIA (TRANSCRIPTION FACTOR IIIA); 5S rDNA binding / 5S rRNA binding / nucleic acid binding / transcription factor/ zinc ion binding  note TRANSCRIPTION FACTOR IIIA (TFIIIA); FUNCTIONS IN: transcription factor activity, 5S rRNA binding, zinc ion binding, 5S rDNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus, nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), Zinc finger, C2H2-type/integrase, DNA-binding (InterPro:IPR013087); BEST Arabidopsis thaliana protein match is: REF6 (RELATIVE OF EARLY FLOWERING 6); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT3G48430.1); Has 96635 Blast hits to 33452 proteins in 763 species: Archae - 0; Bacteria - 12; Metazoa - 91423; Fungi - 2477; Plants - 221; Viruses - 0; Other Eukaryotes - 2502 (source: NCBI BLink).  protein_id AT1G72050.2p  transcript_id AT1G72050.2  protein_id AT1G72050.2p  transcript_id AT1G72050.2  
At1g72050	chr1:027115808	0.0	W/27115808-27115816,27115915-27116359,27116522-27116757,27116858-27117001,27117088-27117228	AT1G72050.1  CDS  gene_syn F28P5.6, F28P5_6, TFIIIA, TRANSCRIPTION FACTOR IIIA  gene TFIIIA  function Encodes a transcriptional factor TFIIIA required for transcription of 5S rRNA gene. 5S rRNA is the smallest constituent of the ribosome. Work on one of the gene models AT1G72050.2 showed that it encodes a protein with nine Cys(2)-His(2)-type zinc fingers, a characteristic feature of TFIIIA proteins. AT1G72050.2 also contains a 23 amino acid spacer between fingers 1 and 2, a 66 amino acid spacer between fingers 4 and 5, and a 50 amino acid non-finger C-terminal tail. in vitro assay demonstrated that AT1g72050.2 binds to 5S rDNA and efficiently stimulates the transcription of 5S rRNA. AT1g72050.2 also binds to 5S rRNA in vitro. AT1g72050.2 is located at several nuclear foci including the nucleolus and is absent from the cytoplasm.  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function zinc ion binding|GO:0008270||ISS  product TFIIIA (TRANSCRIPTION FACTOR IIIA); nucleic acid binding / zinc ion binding  note TRANSCRIPTION FACTOR IIIA (TFIIIA); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), Zinc finger, C2H2-type/integrase, DNA-binding (InterPro:IPR013087); BEST Arabidopsis thaliana protein match is: REF6 (RELATIVE OF EARLY FLOWERING 6); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT3G48430.1); Has 56072 Blast hits to 25360 proteins in 378 species: Archae - 0; Bacteria - 12; Metazoa - 53056; Fungi - 1217; Plants - 183; Viruses - 0; Other Eukaryotes - 1604 (source: NCBI BLink).  protein_id AT1G72050.1p  transcript_id AT1G72050.1  protein_id AT1G72050.1p  transcript_id AT1G72050.1  
At1g72060	chr1:027118494	0.0	W/27118494-27118536,27118641-27118843	AT1G72060.1  CDS  gene_syn F28P5.12, F28P5_12  go_component endomembrane system|GO:0012505||IEA  go_function serine-type endopeptidase inhibitor activity|GO:0004867||IEA  go_process response to oxidative stress|GO:0006979|18614705|IMP  product serine-type endopeptidase inhibitor  note serine-type endopeptidase inhibitor; FUNCTIONS IN: serine-type endopeptidase inhibitor activity; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I20, Pin2 (InterPro:IPR003465); Has 14 Blast hits to 14 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G72060.1p  transcript_id AT1G72060.1  protein_id AT1G72060.1p  transcript_id AT1G72060.1  
At1g72070	chr1:027119414	0.0	C/27119414-27119608,27119208-27119270,27118851-27118973	AT1G72070.1  CDS  gene_syn F28P5.5, F28P5_5  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT4G39960.1); Has 11373 Blast hits to 11373 proteins in 1755 species: Archae - 85; Bacteria - 4360; Metazoa - 2157; Fungi - 660; Plants - 723; Viruses - 5; Other Eukaryotes - 3383 (source: NCBI BLink).  protein_id AT1G72070.1p  transcript_id AT1G72070.1  protein_id AT1G72070.1p  transcript_id AT1G72070.1  
At1g72080	chr1:027122711	0.0	C/27122711-27122761,27121877-27121930,27121481-27121648,27121290-27121340,27121014-27121199,27120824-27120874,27120591-27120663,27120412-27120504,27120304-27120311	AT1G72080.1  CDS  gene_syn F28P5.14, F28P5_14  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 5026 Blast hits to 3468 proteins in 328 species: Archae - 3; Bacteria - 264; Metazoa - 2430; Fungi - 639; Plants - 514; Viruses - 187; Other Eukaryotes - 989 (source: NCBI BLink).  protein_id AT1G72080.1p  transcript_id AT1G72080.1  protein_id AT1G72080.1p  transcript_id AT1G72080.1  
At1g72090	chr1:027123617	0.0	W/27123617-27123808,27123910-27123948,27124128-27124219,27124391-27124640,27124853-27124972,27125074-27125149,27125228-27125436,27125508-27125616,27125856-27125948,27126043-27126203,27126303-27126767	AT1G72090.1  CDS  gene_syn F28P5.4, F28P5_4  go_component membrane|GO:0016020|17432890|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function iron-sulfur cluster binding|GO:0051536||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  product radical SAM domain-containing protein / TRAM domain-containing protein  note radical SAM domain-containing protein / TRAM domain-containing protein; FUNCTIONS IN: iron-sulfur cluster binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0004 (InterPro:IPR005839), Aldolase-type TIM barrel (InterPro:IPR013785), Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Uncharacterised protein family UPF0004, N-terminal (InterPro:IPR013848), Radical SAM (InterPro:IPR007197), Deoxyribonuclease/rho motif-related TRAM (InterPro:IPR002792), MiaB-like tRNA modifying enzyme, archaeal-type (InterPro:IPR006466); BEST Arabidopsis thaliana protein match is: radical SAM domain-containing protein / TRAM domain-containing protein (TAIR:AT4G36390.1); Has 10341 Blast hits to 10323 proteins in 1298 species: Archae - 269; Bacteria - 4639; Metazoa - 269; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 5110 (source: NCBI BLink).  protein_id AT1G72090.1p  transcript_id AT1G72090.1  protein_id AT1G72090.1p  transcript_id AT1G72090.1  
At1g72100	chr1:027127250	0.0	W/27127250-27128485,27128605-27128811	AT1G72100.1  CDS  gene_syn F28P5.13, F28P5_13  go_component endomembrane system|GO:0012505||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||ISS  product late embryogenesis abundant domain-containing protein / LEA domain-containing protein  note late embryogenesis abundant domain-containing protein / LEA domain-containing protein; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein (InterPro:IPR004238); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22600.1); Has 4144 Blast hits to 2272 proteins in 519 species: Archae - 24; Bacteria - 1375; Metazoa - 599; Fungi - 320; Plants - 924; Viruses - 10; Other Eukaryotes - 892 (source: NCBI BLink).  protein_id AT1G72100.1p  transcript_id AT1G72100.1  protein_id AT1G72100.1p  transcript_id AT1G72100.1  
At1g72110	chr1:027131166	0.0	C/27131166-27131354,27130395-27130967,27130244-27130310,27130066-27130160,27129756-27129965,27129524-27129661,27129253-27129420	AT1G72110.1  CDS  gene_syn F28P5.3, F28P5_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, C globular stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1298 (InterPro:IPR009721), Uncharacterised protein family UPF0089 (InterPro:IPR004255); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38995.1); Has 589 Blast hits to 582 proteins in 94 species: Archae - 2; Bacteria - 456; Metazoa - 7; Fungi - 2; Plants - 109; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G72110.1p  transcript_id AT1G72110.1  protein_id AT1G72110.1p  transcript_id AT1G72110.1  
At1g72120	chr1:027132133	0.0	W/27132133-27132253,27132327-27132544,27132641-27133975	AT1G72120.1  CDS  gene_syn F28P5.2, F28P5_2  go_component membrane|GO:0016020||IEA  go_process oligopeptide transport|GO:0006857||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function transporter activity|GO:0005215||ISS  product transporter  note transporter; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region, conserved site (InterPro:IPR018456), TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: transporter (TAIR:AT1G72125.1); Has 4754 Blast hits to 4609 proteins in 808 species: Archae - 0; Bacteria - 2203; Metazoa - 530; Fungi - 329; Plants - 1116; Viruses - 0; Other Eukaryotes - 576 (source: NCBI BLink).  protein_id AT1G72120.1p  transcript_id AT1G72120.1  protein_id AT1G72120.1p  transcript_id AT1G72120.1  
At1g72125	chr1:027134168	0.0	W/27134168-27134288,27134360-27134577,27134833-27135362,27135441-27136257	AT1G72125.1  CDS  go_component membrane|GO:0016020||IEA  go_process oligopeptide transport|GO:0006857||IEA  go_function transporter activity|GO:0005215||IEA  product transporter  note transporter; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region, conserved site (InterPro:IPR018456), TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: transporter (TAIR:AT1G72120.1); Has 4403 Blast hits to 4320 proteins in 785 species: Archae - 0; Bacteria - 2013; Metazoa - 453; Fungi - 323; Plants - 1116; Viruses - 0; Other Eukaryotes - 498 (source: NCBI BLink).  protein_id AT1G72125.1p  transcript_id AT1G72125.1  protein_id AT1G72125.1p  transcript_id AT1G72125.1  
At1g72130	chr1:027137201	0.0	W/27137201-27137309,27137433-27137650,27137736-27138259,27138458-27139223	AT1G72130.1  CDS  gene_syn F28P5.1, F28P5_1  go_component membrane|GO:0016020||IEA  go_process oligopeptide transport|GO:0006857||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region, conserved site (InterPro:IPR018456), TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT1G22540.1); Has 4583 Blast hits to 4496 proteins in 807 species: Archae - 0; Bacteria - 2100; Metazoa - 484; Fungi - 308; Plants - 1112; Viruses - 0; Other Eukaryotes - 579 (source: NCBI BLink).  protein_id AT1G72130.1p  transcript_id AT1G72130.1  protein_id AT1G72130.1p  transcript_id AT1G72130.1  
At1g72130	chr1:027137763	0.0	W/27137763-27138259,27138458-27139223	AT1G72130.2  CDS  gene_syn F28P5.1, F28P5_1  go_component membrane|GO:0016020||IEA  go_process oligopeptide transport|GO:0006857||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT1G72140.1); Has 2324 Blast hits to 2256 proteins in 396 species: Archae - 0; Bacteria - 398; Metazoa - 461; Fungi - 240; Plants - 1069; Viruses - 0; Other Eukaryotes - 156 (source: NCBI BLink).  protein_id AT1G72130.2p  transcript_id AT1G72130.2  protein_id AT1G72130.2p  transcript_id AT1G72130.2  
At1g72131	chr1:027139395	0.0	W/27139395-27140536	AT1G72131.1  pseudogenic_transcript  pseudo  function pseudogene of proton-dependent oligopeptide transporter  
At1g72140	chr1:027141877	0.0	W/27141877-27142012,27142086-27142303,27142706-27143238,27143566-27144346	AT1G72140.1  CDS  gene_syn T9N14.16, T9N14_16  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_process response to nematode|GO:0009624|16478044|IEP  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport, response to nematode; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT1G22540.1); Has 4291 Blast hits to 4187 proteins in 759 species: Archae - 0; Bacteria - 1913; Metazoa - 527; Fungi - 296; Plants - 1112; Viruses - 0; Other Eukaryotes - 443 (source: NCBI BLink).  protein_id AT1G72140.1p  transcript_id AT1G72140.1  protein_id AT1G72140.1p  transcript_id AT1G72140.1  
At1g72141	chr1:027145146	0.0	C/27145146-27145322	AT1G72141.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G72141.1p  transcript_id AT1G72141.1  protein_id AT1G72141.1p  transcript_id AT1G72141.1  
At1g72150	chr1:027148558	0.0	W/27148558-27149775,27149965-27150092,27150181-27150313,27150410-27150652	AT1G72150.1  CDS  gene_syn PATELLIN 1, PATL1, T9N14.1, T9N14_1  gene PATL1  function novel cell-plate-associated protein that is related in sequence to proteins involved in membrane trafficking in other eukaryotes  go_component vacuole|GO:0005773|14760709|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product PATL1 (PATELLIN 1); transporter  note PATELLIN 1 (PATL1); FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: apoplast, plasma membrane, chloroplast, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), GOLD (InterPro:IPR009038), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: PATL2 (PATELLIN 2); transporter (TAIR:AT1G22530.1); Has 63615 Blast hits to 31247 proteins in 1651 species: Archae - 270; Bacteria - 9144; Metazoa - 25127; Fungi - 6534; Plants - 2390; Viruses - 399; Other Eukaryotes - 19751 (source: NCBI BLink).  protein_id AT1G72150.1p  transcript_id AT1G72150.1  protein_id AT1G72150.1p  transcript_id AT1G72150.1  
At1g72160	chr1:027154662	0.0	C/27154662-27155609,27154427-27154551,27154194-27154344,27153823-27154071	AT1G72160.1  CDS  gene_syn T9N14.8, T9N14_8  go_component plasma membrane|GO:0005886|17317660|IDA  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  note SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), GOLD (InterPro:IPR009038), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT4G09160.1); Has 3452 Blast hits to 2934 proteins in 279 species: Archae - 35; Bacteria - 208; Metazoa - 1309; Fungi - 627; Plants - 480; Viruses - 12; Other Eukaryotes - 781 (source: NCBI BLink).  protein_id AT1G72160.1p  transcript_id AT1G72160.1  protein_id AT1G72160.1p  transcript_id AT1G72160.1  
At1g72170	chr1:027156403	0.0	W/27156403-27156535,27156755-27156915,27157502-27157516	AT1G72170.1  CDS  go_component mitochondrion|GO:0005739|15276431|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF543 (InterPro:IPR007512); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22520.2); Has 60 Blast hits to 60 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G72170.1p  transcript_id AT1G72170.1  protein_id AT1G72170.1p  transcript_id AT1G72170.1  
At1g72175	chr1:027157978	0.0	W/27157978-27158068,27158538-27158737,27158898-27158999,27159114-27159165,27159247-27159359	AT1G72175.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1232 (InterPro:IPR010652), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G22510.1); Has 591 Blast hits to 591 proteins in 84 species: Archae - 0; Bacteria - 8; Metazoa - 474; Fungi - 32; Plants - 29; Viruses - 2; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT1G72175.1p  transcript_id AT1G72175.1  protein_id AT1G72175.1p  transcript_id AT1G72175.1  
At1g72180	chr1:027164074	0.0	W/27164074-27166436,27166540-27166748,27166843-27167204	AT1G72180.1  CDS  gene_syn T9N14.3, T9N14_3  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: HSL1 (HAESA-Like 1); ATP binding / kinase/ protein serine/threonine kinase (TAIR:AT1G28440.1); Has 152367 Blast hits to 102734 proteins in 3271 species: Archae - 82; Bacteria - 12641; Metazoa - 60474; Fungi - 7774; Plants - 50172; Viruses - 384; Other Eukaryotes - 20840 (source: NCBI BLink).  protein_id AT1G72180.1p  transcript_id AT1G72180.1  protein_id AT1G72180.1p  transcript_id AT1G72180.1  
At1g72190	chr1:027169599	0.0	C/27169599-27169696,27169330-27169468,27168941-27169085,27168709-27168836,27168524-27168595,27168311-27168428,27168133-27168230,27167958-27167999,27167619-27167831,27167458-27167526	AT1G72190.1  CDS  gene_syn T9N14.9, T9N14_9  go_process metabolic process|GO:0008152||IEA  go_process homoserine biosynthetic process|GO:0009090||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_function cofactor binding|GO:0048037||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product oxidoreductase family protein  note oxidoreductase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: homoserine biosynthetic process, metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: FDH (FORMATE DEHYDROGENASE); NAD or NADH binding / binding / catalytic/ cofactor binding / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor (TAIR:AT5G14780.1); Has 19019 Blast hits to 19015 proteins in 1507 species: Archae - 281; Bacteria - 9318; Metazoa - 651; Fungi - 751; Plants - 270; Viruses - 5; Other Eukaryotes - 7743 (source: NCBI BLink).  protein_id AT1G72190.1p  transcript_id AT1G72190.1  protein_id AT1G72190.1p  transcript_id AT1G72190.1  
At1g72200	chr1:027169935	0.0	C/27169935-27171149	AT1G72200.1  CDS  gene_syn T9N14.11, T9N14_11  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G22500.1); Has 6282 Blast hits to 6263 proteins in 217 species: Archae - 0; Bacteria - 4; Metazoa - 1999; Fungi - 545; Plants - 2635; Viruses - 48; Other Eukaryotes - 1051 (source: NCBI BLink).  protein_id AT1G72200.1p  transcript_id AT1G72200.1  protein_id AT1G72200.1p  transcript_id AT1G72200.1  
At1g72210	chr1:027180066	0.0	W/27180066-27180533,27181069-27181467,27182173-27182268	AT1G72210.1  CDS  gene_syn T9N14.4, T9N14_4  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein (bHLH096)  note basic helix-loop-helix (bHLH) family protein (bHLH096); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT1G22490.1); Has 886 Blast hits to 883 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 21; Plants - 835; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G72210.1p  transcript_id AT1G72210.1  protein_id AT1G72210.1p  transcript_id AT1G72210.1  
At1g72220	chr1:027184388	0.0	C/27184388-27185629	AT1G72220.1  CDS  gene_syn T9N14.22, T9N14_22  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: inflorescence meristem, flower, root; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G33565.1); Has 6576 Blast hits to 6537 proteins in 239 species: Archae - 0; Bacteria - 5; Metazoa - 2052; Fungi - 590; Plants - 2688; Viruses - 75; Other Eukaryotes - 1166 (source: NCBI BLink).  protein_id AT1G72220.1p  transcript_id AT1G72220.1  protein_id AT1G72220.1p  transcript_id AT1G72220.1  
At1g72230	chr1:027188287	0.0	W/27188287-27188443,27188705-27189093	AT1G72230.1  CDS  gene_syn T9N14.17, T9N14_17  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function copper ion binding|GO:0005507||ISS  product plastocyanin-like domain-containing protein  note plastocyanin-like domain-containing protein; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972), Blue (type 1) copper domain (InterPro:IPR000923); BEST Arabidopsis thaliana protein match is: plastocyanin-like domain-containing protein (TAIR:AT1G22480.1); Has 791 Blast hits to 784 proteins in 49 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 786; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G72230.1p  transcript_id AT1G72230.1  protein_id AT1G72230.1p  transcript_id AT1G72230.1  
At1g72240	chr1:027190211	0.0	W/27190211-27190573	AT1G72240.1  CDS  gene_syn T9N14.5, T9N14_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22470.1); Has 35 Blast hits to 33 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G72240.1p  transcript_id AT1G72240.1  protein_id AT1G72240.1p  transcript_id AT1G72240.1  
At1g72250	chr1:027192902	0.0	W/27192902-27192968,27193046-27193120,27193194-27193265,27193354-27193904,27194026-27194197,27194281-27194348,27194439-27194649,27194743-27194805,27194893-27194982,27195088-27195186,27195278-27195454,27195544-27195829,27195993-27196154,27196242-27196457,27196562-27196599,27196715-27196878,27196953-27197078,27197168-27198118	AT1G72250.1  CDS  gene_syn T9N14.6, T9N14_6  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product kinesin motor protein-related  note kinesin motor protein-related; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin motor protein-related (TAIR:AT2G22610.1); Has 9902 Blast hits to 9165 proteins in 333 species: Archae - 26; Bacteria - 186; Metazoa - 4851; Fungi - 1029; Plants - 929; Viruses - 28; Other Eukaryotes - 2853 (source: NCBI BLink).  protein_id AT1G72250.1p  transcript_id AT1G72250.1  protein_id AT1G72250.1p  transcript_id AT1G72250.1  
At1g72260	chr1:027199139	0.0	C/27199139-27199358,27198986-27199063,27198803-27198909	AT1G72260.1  CDS  gene_syn THI2.1, THI2.1.1, THIONIN 2.1  gene THI2.1  function Encodes a thionin which is a cysteine rich protein having antimicrobial properties. Thi2.1 is expressed in response to a variety of pathogens and induced by ethylene and jasmonic acid. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952|8552715|IEP  go_process defense response|GO:0006952|9144959|IMP  go_process response to salicylic acid stimulus|GO:0009751|16377744|TAS  go_process response to jasmonic acid stimulus|GO:0009753|16377744|TAS  go_process jasmonic acid mediated signaling pathway|GO:0009867|9824308|IGI  go_function toxin receptor binding|GO:0050827|8552715|TAS  product THI2.1 (THIONIN 2.1); toxin receptor binding  note THIONIN 2.1 (THI2.1); FUNCTIONS IN: toxin receptor binding; INVOLVED IN: response to jasmonic acid stimulus, jasmonic acid mediated signaling pathway, defense response, response to salicylic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Thionin (InterPro:IPR001010); BEST Arabidopsis thaliana protein match is: thionin, putative (TAIR:AT1G66100.1); Has 134 Blast hits to 133 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G72260.1p  transcript_id AT1G72260.1  protein_id AT1G72260.1p  transcript_id AT1G72260.1  
At1g72270	chr1:027209908	0.0	C/27209908-27211122,27209325-27209373,27208036-27209095,27207271-27207961,27206920-27206986,27206509-27206577,27206128-27206279,27202732-27206004,27202447-27202650,27202116-27202319,27201820-27202023,27201497-27201643,27201238-27201378,27201028-27201219,27200507-27200930,27200262-27200349,27199982-27200166,27199733-27199905	AT1G72270.1  CDS  gene_syn T9N14.23, T9N14_23  go_component mitochondrion|GO:0005739|14671022|IDA  product unknown protein  note unknown protein; LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, embryo, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27010.1); Has 521 Blast hits to 414 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 294; Fungi - 52; Plants - 165; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G72270.1p  transcript_id AT1G72270.1  protein_id AT1G72270.1p  transcript_id AT1G72270.1  
At1g72280	chr1:027214336	0.0	C/27214336-27214506,27213805-27213936,27213438-27213696,27213219-27213329,27213021-27213139,27212828-27212932,27212524-27212726,27212302-27212425,27212039-27212224	AT1G72280.1  CDS  gene_syn AERO1, Arabidopsis endoplasmic reticulum oxidoreductins 1, T9N14.18, T9N14_18  gene AERO1  function endoplasmic reticulum oxidoreductin  go_process protein thiol-disulfide exchange|GO:0006467||IEA  go_function protein binding|GO:0005515||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor|GO:0016671||IEA  go_function FAD binding|GO:0050660||IEA  go_component endoplasmic reticulum|GO:0005783|13678526|IDA  product AERO1 (Arabidopsis endoplasmic reticulum oxidoreductins 1); FAD binding / electron carrier/ oxidoreductase, acting on sulfur group of donors, disulfide as acceptor / protein binding  note Arabidopsis endoplasmic reticulum oxidoreductins 1 (AERO1); FUNCTIONS IN: protein binding, electron carrier activity, FAD binding, oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: protein thiol-disulfide exchange; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Endoplasmic reticulum oxidoreductin 1 (InterPro:IPR007266); BEST Arabidopsis thaliana protein match is: AERO2 (Arabidopsis endoplasmic reticulum oxidoreductins 2); FAD binding / electron carrier/ oxidoreductase, acting on sulfur group of donors, disulfide as acceptor / protein binding (TAIR:AT2G38960.1); Has 360 Blast hits to 354 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 101; Plants - 37; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT1G72280.1p  transcript_id AT1G72280.1  protein_id AT1G72280.1p  transcript_id AT1G72280.1  
At1g72290	chr1:027215852	0.0	W/27215852-27216499	AT1G72290.1  CDS  gene_syn T9N14.19, T9N14_19  go_component endomembrane system|GO:0012505||IEA  go_function endopeptidase inhibitor activity|GO:0004866||IEA  go_process biological_process|GO:0008150||ND  go_function endopeptidase inhibitor activity|GO:0004866||ISS  product trypsin and protease inhibitor family protein / Kunitz family protein  note trypsin and protease inhibitor family protein / Kunitz family protein; FUNCTIONS IN: endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I3, Kunitz legume (InterPro:IPR002160), Kunitz inhibitor ST1-like (InterPro:IPR011065); BEST Arabidopsis thaliana protein match is: trypsin and protease inhibitor family protein / Kunitz family protein (TAIR:AT1G73325.1); Has 190 Blast hits to 190 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 190; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G72290.1p  transcript_id AT1G72290.1  protein_id AT1G72290.1p  transcript_id AT1G72290.1  
At1g72300	chr1:027217679	0.0	C/27217679-27220966	AT1G72300.1  CDS  gene_syn T9N14.20, T9N14_20  function Encodes a leucine-rich repeat receptor kinase (LRR-RK) involved in the perception of PSY1. PSY1 is an 18-aa tyrosine-sulfated glycopeptide encoded by AT5G58650 that promotes cellular proliferation and expansion.  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_process response to wounding|GO:0009611|17989228|IGI  go_function peptide receptor activity|GO:0001653|17989228|IMP  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function transmembrane receptor activity|GO:0004888|17989228|IMP  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: peptide receptor activity, transmembrane receptor activity, protein serine/threonine kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation, response to wounding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: AtRLP2 (Receptor Like Protein 2); protein binding / protein kinase (TAIR:AT1G17240.1); Has 125859 Blast hits to 91382 proteins in 3076 species: Archae - 73; Bacteria - 10550; Metazoa - 47451; Fungi - 6454; Plants - 43444; Viruses - 475; Other Eukaryotes - 17412 (source: NCBI BLink).  protein_id AT1G72300.1p  transcript_id AT1G72300.1  protein_id AT1G72300.1p  transcript_id AT1G72300.1  
At1g72310	chr1:027226405	0.0	W/27226405-27227379	AT1G72310.1  CDS  gene_syn ATL3, RING-H2 ZINC FINGER PROTEIN ATL3, T9N14.21  gene ATL3  function Encodes a putative RING-H2 zinc finger protein ATL3 (ATL3).  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product ATL3; protein binding / zinc ion binding  note ATL3; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G53820.1); Has 6900 Blast hits to 6848 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 2372; Fungi - 522; Plants - 2760; Viruses - 55; Other Eukaryotes - 1191 (source: NCBI BLink).  protein_id AT1G72310.1p  transcript_id AT1G72310.1  protein_id AT1G72310.1p  transcript_id AT1G72310.1  
At1g72320	chr1:027232327	0.0	C/27232327-27232514,27231867-27232230,27231452-27231754,27231162-27231332,27230804-27230947,27230554-27230673,27230276-27230461,27230012-27230160,27229635-27229817,27228984-27229371	AT1G72320.2  CDS  gene_syn APUM23, Arabidopsis Pumilio 23, T9N14.7  gene APUM23  go_function RNA binding|GO:0003723||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product APUM23 (Arabidopsis Pumilio 23); RNA binding / binding  note Arabidopsis Pumilio 23 (APUM23); FUNCTIONS IN: RNA binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding region (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); Has 273 Blast hits to 273 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 96; Plants - 37; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT1G72320.2p  transcript_id AT1G72320.2  protein_id AT1G72320.2p  transcript_id AT1G72320.2  
At1g72320	chr1:027232327	0.0	C/27232327-27232514,27231867-27232230,27231452-27231754,27231162-27231332,27230804-27230947,27230554-27230673,27230276-27230461,27230012-27230160,27229635-27229817,27228984-27229371	AT1G72320.3  CDS  gene_syn APUM23, Arabidopsis Pumilio 23, T9N14.7  gene APUM23  go_function RNA binding|GO:0003723||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product APUM23 (Arabidopsis Pumilio 23); RNA binding / binding  note Arabidopsis Pumilio 23 (APUM23); FUNCTIONS IN: RNA binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding region (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); Has 273 Blast hits to 273 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 96; Plants - 37; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT1G72320.3p  transcript_id AT1G72320.3  protein_id AT1G72320.3p  transcript_id AT1G72320.3  
At1g72320	chr1:027232327	0.0	C/27232327-27232580,27231867-27232230,27231452-27231754,27231162-27231332,27230804-27230947,27230554-27230673,27230276-27230461,27230012-27230160,27229635-27229817,27228984-27229371	AT1G72320.1  CDS  gene_syn APUM23, Arabidopsis Pumilio 23, T9N14.7  gene APUM23  go_function RNA binding|GO:0003723||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product APUM23 (Arabidopsis Pumilio 23); RNA binding / binding  note Arabidopsis Pumilio 23 (APUM23); FUNCTIONS IN: RNA binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding region (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); Has 273 Blast hits to 273 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 96; Plants - 37; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT1G72320.1p  transcript_id AT1G72320.1  protein_id AT1G72320.1p  transcript_id AT1G72320.1  
At1g72330	chr1:027233637	0.0	W/27233637-27233849,27234113-27234163,27234267-27234317,27234435-27234500,27234579-27234640,27234730-27234808,27234899-27235003,27235098-27235208,27235279-27235416,27235490-27235685,27235765-27235919,27236005-27236079,27236164-27236367,27236455-27236571	AT1G72330.1  CDS  gene_syn ALAAT2, ALANINE AMINOTRANSFERASE 2, T10D10.20, T10D10_20  gene ALAAT2  function Encodes for alanine aminotransferase ALAAT2.  go_component mitochondrion|GO:0005739|17137349|IDA  go_process biosynthetic process|GO:0009058||IEA  go_process L-alanine biosynthetic process from pyruvate|GO:0019272||IEA  go_process L-alanine catabolic process, by transamination|GO:0019481||IEA  go_process anaerobic glycolysis|GO:0019642||IEA  go_function ATP binding|GO:0005524|17137349|IDA  go_function L-alanine:2-oxoglutarate aminotransferase activity|GO:0004021||ISS  product ALAAT2 (ALANINE AMINOTRANSFERASE 2); ATP binding / L-alanine:2-oxoglutarate aminotransferase  note ALANINE AMINOTRANSFERASE 2 (ALAAT2); FUNCTIONS IN: L-alanine:2-oxoglutarate aminotransferase activity, ATP binding; INVOLVED IN: biosynthetic process, L-alanine biosynthetic process from pyruvate, anaerobic glycolysis, L-alanine catabolic process, by transamination; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: AlaAT1 (ALANINE AMINOTRANSFERAS); ATP binding / L-alanine:2-oxoglutarate aminotransferase (TAIR:AT1G17290.1); Has 17830 Blast hits to 17825 proteins in 1653 species: Archae - 482; Bacteria - 10031; Metazoa - 544; Fungi - 415; Plants - 882; Viruses - 0; Other Eukaryotes - 5476 (source: NCBI BLink).  protein_id AT1G72330.1p  transcript_id AT1G72330.1  protein_id AT1G72330.1p  transcript_id AT1G72330.1  
At1g72330	chr1:027233637	0.0	W/27233637-27233849,27234113-27234163,27234267-27234317,27234435-27234500,27234579-27234640,27234730-27234808,27234899-27235003,27235098-27235208,27235279-27235416,27235490-27235685,27235765-27235919,27236039-27236079,27236164-27236191	AT1G72330.2  CDS  gene_syn ALAAT2, ALANINE AMINOTRANSFERASE 2, T10D10.20, T10D10_20  gene ALAAT2  function Encodes for alanine aminotransferase ALAAT2.  go_component mitochondrion|GO:0005739|17137349|IDA  go_process biosynthetic process|GO:0009058||IEA  go_function ATP binding|GO:0005524|17137349|IDA  go_function L-alanine:2-oxoglutarate aminotransferase activity|GO:0004021||ISS  product ALAAT2 (ALANINE AMINOTRANSFERASE 2); ATP binding / L-alanine:2-oxoglutarate aminotransferase  note ALANINE AMINOTRANSFERASE 2 (ALAAT2); FUNCTIONS IN: L-alanine:2-oxoglutarate aminotransferase activity, ATP binding; INVOLVED IN: biosynthetic process; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: AlaAT1 (ALANINE AMINOTRANSFERAS); ATP binding / L-alanine:2-oxoglutarate aminotransferase (TAIR:AT1G17290.1); Has 15215 Blast hits to 15212 proteins in 1615 species: Archae - 461; Bacteria - 9168; Metazoa - 534; Fungi - 412; Plants - 863; Viruses - 0; Other Eukaryotes - 3777 (source: NCBI BLink).  protein_id AT1G72330.2p  transcript_id AT1G72330.2  protein_id AT1G72330.2p  transcript_id AT1G72330.2  
At1g72340	chr1:027236898	0.0	W/27236898-27237302,27237384-27237536,27237652-27237793,27237964-27238205,27238276-27238482	AT1G72340.1  CDS  gene_syn T10D10.19, T10D10_19  go_process cellular metabolic process|GO:0044237||IEA  go_component eukaryotic translation initiation factor 2B complex|GO:0005851||ISS  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  go_function GTP binding|GO:0005525||ISS  product eukaryotic translation initiation factor 2B family protein / eIF-2B family protein  note eukaryotic translation initiation factor 2B family protein / eIF-2B family protein; FUNCTIONS IN: GTP binding, translation initiation factor activity; INVOLVED IN: translational initiation, cellular metabolic process; LOCATED IN: eukaryotic translation initiation factor 2B complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor 2B related (InterPro:IPR000649); BEST Arabidopsis thaliana protein match is: GTP binding / translation initiation factor (TAIR:AT1G53900.1); Has 3140 Blast hits to 3140 proteins in 618 species: Archae - 225; Bacteria - 960; Metazoa - 451; Fungi - 307; Plants - 114; Viruses - 0; Other Eukaryotes - 1083 (source: NCBI BLink).  protein_id AT1G72340.1p  transcript_id AT1G72340.1  protein_id AT1G72340.1p  transcript_id AT1G72340.1  
At1g72350	chr1:027239273	0.0	C/27239273-27239947	AT1G72350.1  CDS  gene_syn T10D10.18, T10D10_18  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product MADS-box protein (AGL60)  note MADS-box protein (AGL60); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: MADS-box protein (AGL100) (TAIR:AT1G17310.1); Has 3896 Blast hits to 3895 proteins in 521 species: Archae - 0; Bacteria - 0; Metazoa - 551; Fungi - 201; Plants - 3097; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G72350.1p  transcript_id AT1G72350.1  protein_id AT1G72350.1p  transcript_id AT1G72350.1  
At1g72360	chr1:027241904	0.0	W/27241904-27242090,27242176-27242777	AT1G72360.2  CDS  gene_syn T10D10.17, T10D10_17  function encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9687012|TAS  go_function transcription factor activity|GO:0003700||ISS  product ethylene-responsive element-binding protein, putative  note ethylene-responsive element-binding protein, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: ethylene mediated signaling pathway, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: RAP2.2; DNA binding / transcription factor (TAIR:AT3G14230.3); Has 3985 Blast hits to 3773 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3946; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT1G72360.2p  transcript_id AT1G72360.2  protein_id AT1G72360.2p  transcript_id AT1G72360.2  
At1g72360	chr1:027241904	0.0	W/27241904-27242090,27242182-27242777	AT1G72360.3  CDS  gene_syn T10D10.17, T10D10_17  function encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9687012|TAS  go_function transcription factor activity|GO:0003700||ISS  product ethylene-responsive element-binding protein, putative  note ethylene-responsive element-binding protein, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: ethylene mediated signaling pathway, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: RAP2.12; DNA binding / transcription factor (TAIR:AT1G53910.3); Has 4037 Blast hits to 3807 proteins in 203 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3997; Viruses - 1; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT1G72360.3p  transcript_id AT1G72360.3  protein_id AT1G72360.3p  transcript_id AT1G72360.3  
At1g72360	chr1:027242142	0.0	W/27242142-27242777	AT1G72360.1  CDS  gene_syn T10D10.17, T10D10_17  function encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9687012|TAS  go_function transcription factor activity|GO:0003700||ISS  product ethylene-responsive element-binding protein, putative  note ethylene-responsive element-binding protein, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: ethylene mediated signaling pathway, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT2G47520.1); Has 3991 Blast hits to 3768 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3955; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT1G72360.1p  transcript_id AT1G72360.1  protein_id AT1G72360.1p  transcript_id AT1G72360.1  
At1g72370	chr1:027244698	0.0	C/27244698-27244842,27243896-27244158,27243619-27243816,27243295-27243514,27243148-27243206	AT1G72370.2  CDS  gene_syn AP40, P40, RP40, RPSAA, T10D10.16, T10D10_16  gene P40  function acidic protein associated to 40S ribosomal subunit of ribosomes. Involved in polysome formation during active protein synthesis. Expressed in actively growing tissue.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component cytoplasm|GO:0005737|8051176|IDA  go_component small ribosomal subunit|GO:0015935|8051176|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_process response to osmotic stress|GO:0006970|16254930|IEP  go_process response to salt stress|GO:0009651|16254930|IEP  go_process mature ribosome assembly|GO:0042256||IDA  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product P40; structural constituent of ribosome  note P40; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: response to salt stress, mature ribosome assembly, translation, response to osmotic stress; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S2 (InterPro:IPR001865), Ribosomal protein S2, conserved site (InterPro:IPR018130), Ribosomal protein S2, eukaryotic/archaeal (InterPro:IPR005707); BEST Arabidopsis thaliana protein match is: RPSAb (40S ribosomal protein SA B); structural constituent of ribosome (TAIR:AT3G04770.2); Has 2269 Blast hits to 2268 proteins in 725 species: Archae - 182; Bacteria - 833; Metazoa - 546; Fungi - 181; Plants - 102; Viruses - 0; Other Eukaryotes - 425 (source: NCBI BLink).  protein_id AT1G72370.2p  transcript_id AT1G72370.2  protein_id AT1G72370.2p  transcript_id AT1G72370.2  
At1g72370	chr1:027244698	0.0	C/27244698-27244842,27243896-27244158,27243619-27243816,27243295-27243514,27243148-27243218	AT1G72370.1  CDS  gene_syn AP40, P40, RP40, RPSAA, T10D10.16, T10D10_16  gene P40  function acidic protein associated to 40S ribosomal subunit of ribosomes. Involved in polysome formation during active protein synthesis. Expressed in actively growing tissue.  go_component nucleus|GO:0005634|14617066|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component cytoplasm|GO:0005737|8051176|IDA  go_component small ribosomal subunit|GO:0015935|8051176|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_process response to osmotic stress|GO:0006970|16254930|IEP  go_process response to salt stress|GO:0009651|16254930|IEP  go_process mature ribosome assembly|GO:0042256||IDA  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product P40; structural constituent of ribosome  note P40; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: response to salt stress, mature ribosome assembly, translation, response to osmotic stress; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S2 (InterPro:IPR001865), Ribosomal protein S2, conserved site (InterPro:IPR018130), Ribosomal protein S2, eukaryotic/archaeal (InterPro:IPR005707); BEST Arabidopsis thaliana protein match is: RPSAb (40S ribosomal protein SA B); structural constituent of ribosome (TAIR:AT3G04770.2); Has 2292 Blast hits to 2290 proteins in 731 species: Archae - 182; Bacteria - 844; Metazoa - 552; Fungi - 181; Plants - 105; Viruses - 0; Other Eukaryotes - 428 (source: NCBI BLink).  protein_id AT1G72370.1p  transcript_id AT1G72370.1  protein_id AT1G72370.1p  transcript_id AT1G72370.1  
At1g72390	chr1:027245455	0.0	W/27245455-27245568,27245661-27245730,27245818-27245882,27245984-27246061,27246295-27246375,27246699-27246836,27246923-27247021,27247111-27248465,27248716-27248933,27249013-27249161,27249523-27249561,27249647-27251218	AT1G72390.1  CDS  gene_syn T10D10.14, T10D10_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 7899 Blast hits to 6384 proteins in 374 species: Archae - 6; Bacteria - 210; Metazoa - 3913; Fungi - 1320; Plants - 701; Viruses - 22; Other Eukaryotes - 1727 (source: NCBI BLink).  protein_id AT1G72390.1p  transcript_id AT1G72390.1  protein_id AT1G72390.1p  transcript_id AT1G72390.1  
At1g72410	chr1:027256188	0.0	C/27256188-27256246,27255932-27256108,27255739-27255838,27255613-27255643,27255504-27255531,27255274-27255426,27253513-27255184,27252265-27253417,27252120-27252173,27251949-27252013	AT1G72410.1  CDS  gene_syn T10D10.12, T10D10_12  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product COP1-interacting protein-related  note COP1-interacting protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17360.1); Has 12658 Blast hits to 8688 proteins in 500 species: Archae - 14; Bacteria - 773; Metazoa - 6078; Fungi - 1243; Plants - 387; Viruses - 26; Other Eukaryotes - 4137 (source: NCBI BLink).  protein_id AT1G72410.1p  transcript_id AT1G72410.1  protein_id AT1G72410.1p  transcript_id AT1G72410.1  
At1g72416	chr1:027260020	0.0	C/27260020-27260109,27259831-27259915,27259678-27259745,27259520-27259576,27259125-27259430	AT1G72416.3  CDS  go_function heat shock protein binding|GO:0031072||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product heat shock protein binding  note heat shock protein binding; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT3G14200.1); Has 12005 Blast hits to 12005 proteins in 1748 species: Archae - 86; Bacteria - 4154; Metazoa - 2592; Fungi - 1045; Plants - 773; Viruses - 6; Other Eukaryotes - 3349 (source: NCBI BLink).  protein_id AT1G72416.3p  transcript_id AT1G72416.3  protein_id AT1G72416.3p  transcript_id AT1G72416.3  
At1g72416	chr1:027260020	0.0	C/27260020-27260109,27259831-27259915,27259678-27259745,27259520-27259576,27259221-27259430,27258988-27259044	AT1G72416.2  CDS  go_function heat shock protein binding|GO:0031072||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product heat shock protein binding  note heat shock protein binding; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT3G14200.1); Has 12007 Blast hits to 12007 proteins in 1748 species: Archae - 86; Bacteria - 4154; Metazoa - 2592; Fungi - 1049; Plants - 773; Viruses - 6; Other Eukaryotes - 3347 (source: NCBI BLink).  protein_id AT1G72416.2p  transcript_id AT1G72416.2  protein_id AT1G72416.2p  transcript_id AT1G72416.2  
At1g72416	chr1:027260020	0.0	C/27260020-27260109,27259831-27259915,27259678-27259745,27259520-27259576,27259221-27259430,27258995-27259048	AT1G72416.1  CDS  go_function heat shock protein binding|GO:0031072||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product heat shock protein binding  note heat shock protein binding; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT3G14200.1); Has 11979 Blast hits to 11979 proteins in 1749 species: Archae - 86; Bacteria - 4156; Metazoa - 2588; Fungi - 1038; Plants - 768; Viruses - 6; Other Eukaryotes - 3337 (source: NCBI BLink).  protein_id AT1G72416.1p  transcript_id AT1G72416.1  protein_id AT1G72416.1p  transcript_id AT1G72416.1  
At1g72416	chr1:027260020	0.0	C/27260020-27260109,27259831-27259915,27259678-27259745,27259520-27259576,27259221-27259433,27258995-27259048	AT1G72416.4  CDS  go_function heat shock protein binding|GO:0031072||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product heat shock protein binding  note heat shock protein binding; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT3G14200.1); Has 11997 Blast hits to 11997 proteins in 1748 species: Archae - 86; Bacteria - 4153; Metazoa - 2624; Fungi - 1039; Plants - 761; Viruses - 6; Other Eukaryotes - 3328 (source: NCBI BLink).  protein_id AT1G72416.4p  transcript_id AT1G72416.4  protein_id AT1G72416.4p  transcript_id AT1G72416.4  
At1g72420	chr1:027263135	0.0	C/27263135-27263186,27262782-27262895,27262536-27262592,27262046-27262137,27261849-27261929,27261647-27261745,27261367-27261558	AT1G72420.1  CDS  gene_syn T10D10.11, T10D10_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 (InterPro:IPR013857); BEST Arabidopsis thaliana protein match is: auxin-induced-related / indole-3-acetic acid induced-related (TAIR:AT1G17350.1); Has 408 Blast hits to 408 proteins in 142 species: Archae - 0; Bacteria - 97; Metazoa - 96; Fungi - 57; Plants - 46; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).  protein_id AT1G72420.1p  transcript_id AT1G72420.1  protein_id AT1G72420.1p  transcript_id AT1G72420.1  
At1g72430	chr1:027265150	0.0	C/27265150-27265509	AT1G72430.1  CDS  gene_syn T10D10.10, T10D10_10  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive protein-related  note auxin-responsive protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein-related (TAIR:AT1G17345.1); Has 67 Blast hits to 67 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G72430.1p  transcript_id AT1G72430.1  protein_id AT1G72430.1p  transcript_id AT1G72430.1  
At1g72440	chr1:027272879	0.0	C/27272879-27273596,27272717-27272789,27272502-27272621,27272301-27272376,27271995-27272063,27271821-27271901,27271649-27271720,27271338-27271430,27270982-27271131,27270799-27270882,27270569-27270712,27270216-27270305,27269938-27270020,27269464-27269847,27269089-27269311,27268325-27268996	AT1G72440.1  CDS  gene_syn EDA25, T10D10.9, T10D10_9, embryo sac development arrest 25  gene EDA25  go_component endomembrane system|GO:0012505||IEA  go_process polar nucleus fusion|GO:0010197|15634699|IMP  product EDA25 (embryo sac development arrest 25)  note embryo sac development arrest 25 (EDA25); INVOLVED IN: polar nucleus fusion; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCAAT-binding factor (InterPro:IPR005612); Has 15186 Blast hits to 7963 proteins in 492 species: Archae - 75; Bacteria - 4575; Metazoa - 3576; Fungi - 1830; Plants - 546; Viruses - 293; Other Eukaryotes - 4291 (source: NCBI BLink).  protein_id AT1G72440.1p  transcript_id AT1G72440.1  protein_id AT1G72440.1p  transcript_id AT1G72440.1  
At1g72450	chr1:027275983	0.0	C/27275983-27276136,27275544-27275667,27275065-27275391,27274336-27274540	AT1G72450.1  CDS  gene_syn JASMONATE-ZIM-DOMAIN PROTEIN 6, JAZ6, T10D10.8, T10D10_8, TIFY DOMAIN PROTEIN 11B, TIFY11B  gene JAZ6  function JAZ6 transcript levels rise in response to a jasmonate stimulus and a GFP:JAZ6 fusion protein localizes to the nucleus. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ6:GUS fusion protein, presumably by stimulating ubiquitin-proteasome-mediated degradation.  go_component nucleus|GO:0005634|17637677|IDA  go_process response to wounding|GO:0009611|17675405|IEP  go_process response to jasmonic acid stimulus|GO:0009753|17637677|IEP  go_function molecular_function|GO:0003674||ND  product JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6)  note JASMONATE-ZIM-DOMAIN PROTEIN 6 (JAZ6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to jasmonic acid stimulus, response to wounding; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: JAZ5 (JASMONATE-ZIM-DOMAIN PROTEIN 5) (TAIR:AT1G17380.1); Has 174 Blast hits to 169 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 174; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G72450.1p  transcript_id AT1G72450.1  protein_id AT1G72450.1p  transcript_id AT1G72450.1  
At1g72460	chr1:027279510	0.0	W/27279510-27280406,27280496-27281533	AT1G72460.1  CDS  gene_syn T10D10.7, T10D10_7  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT3G42880.1); Has 58582 Blast hits to 44245 proteins in 2060 species: Archae - 37; Bacteria - 5064; Metazoa - 15645; Fungi - 1774; Plants - 30077; Viruses - 158; Other Eukaryotes - 5827 (source: NCBI BLink).  protein_id AT1G72460.1p  transcript_id AT1G72460.1  protein_id AT1G72460.1p  transcript_id AT1G72460.1  
At1g72470	chr1:027283759	0.0	W/27283759-27285660	AT1G72470.1  CDS  gene_syn ATEXO70D1, T10D10.6, T10D10_6, exocyst subunit EXO70 family protein D1  gene ATEXO70D1  function A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.  go_component exocyst|GO:0000145||IEA  go_process exocytosis|GO:0006887||IEA  go_component exocyst|GO:0000145||ISS  go_process vesicle docking during exocytosis|GO:0006904||ISS  go_function protein binding|GO:0005515||ISS  product ATEXO70D1 (exocyst subunit EXO70 family protein D1); protein binding  note exocyst subunit EXO70 family protein D1 (ATEXO70D1); FUNCTIONS IN: protein binding; INVOLVED IN: exocytosis, vesicle docking during exocytosis; LOCATED IN: exocyst; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: ATEXO70D3 (exocyst subunit EXO70 family protein D3); protein binding (TAIR:AT3G14090.1); Has 575 Blast hits to 573 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 114; Fungi - 72; Plants - 376; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G72470.1p  transcript_id AT1G72470.1  protein_id AT1G72470.1p  transcript_id AT1G72470.1  
At1g72480	chr1:027288146	0.0	C/27288146-27288339,27286854-27287868,27286614-27286750,27286304-27286487	AT1G72480.1  CDS  gene_syn T10D10.5, T10D10_5  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01070.1); Has 422 Blast hits to 420 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 208; Fungi - 101; Plants - 83; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G72480.1p  transcript_id AT1G72480.1  protein_id AT1G72480.1p  transcript_id AT1G72480.1  
At1g72490	chr1:027290727	0.0	C/27290727-27290732,27290555-27290633,27289798-27290390,27289546-27289711,27289435-27289454	AT1G72490.1  CDS  gene_syn T10D10.4, T10D10_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17400.1); Has 46 Blast hits to 46 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 2; Plants - 32; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G72490.1p  transcript_id AT1G72490.1  protein_id AT1G72490.1p  transcript_id AT1G72490.1  
At1g72500	chr1:027298176	0.0	C/27298176-27298556,27297897-27298055,27297597-27297812,27297412-27297507,27297221-27297337,27296872-27297141,27296641-27296800,27296481-27296558,27296263-27296363,27296014-27296184,27295871-27295945,27295336-27295788	AT1G72500.1  CDS  gene_syn T10D10.3, T10D10_3  go_component plasma membrane|GO:0005886|17317660|IDA  product inter-alpha-trypsin inhibitor heavy chain-related  note inter-alpha-trypsin inhibitor heavy chain-related; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: inter-alpha-trypsin inhibitor heavy chain-related (TAIR:AT1G19110.1); Has 1082 Blast hits to 1082 proteins in 207 species: Archae - 2; Bacteria - 371; Metazoa - 410; Fungi - 36; Plants - 60; Viruses - 0; Other Eukaryotes - 203 (source: NCBI BLink).  protein_id AT1G72500.1p  transcript_id AT1G72500.1  protein_id AT1G72500.1p  transcript_id AT1G72500.1  
At1g72510	chr1:027303906	0.0	W/27303906-27304403	AT1G72510.1  CDS  gene_syn T10D10.2, T10D10_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1677, plant (InterPro:IPR012876); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G09970.1); Has 130 Blast hits to 129 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 130; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G72510.1p  transcript_id AT1G72510.1  protein_id AT1G72510.1p  transcript_id AT1G72510.1  
At1g72510	chr1:027303906	0.0	W/27303906-27304403	AT1G72510.2  CDS  gene_syn T10D10.2, T10D10_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1677, plant (InterPro:IPR012876); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G09970.1); Has 130 Blast hits to 129 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 130; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G72510.2p  transcript_id AT1G72510.2  protein_id AT1G72510.2p  transcript_id AT1G72510.2  
At1g72520	chr1:027308611	0.0	W/27308611-27309019,27309151-27309431,27309614-27310178,27310662-27310858,27310951-27311522,27311833-27312589	AT1G72520.1  CDS  gene_syn T10D10.1, T10D10_1  go_component chloroplast|GO:0009507||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function lipoxygenase activity|GO:0016165||IEA  go_function oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|GO:0016702||IEA  go_function metal ion binding|GO:0046872||IEA  go_process defense response|GO:0006952|9232884|TAS  go_process response to wounding|GO:0009611|9232884|TAS  go_process jasmonic acid biosynthetic process|GO:0009695|8702864|TAS  go_process growth|GO:0040007|9232884|TAS  product lipoxygenase, putative  note lipoxygenase, putative; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding; INVOLVED IN: growth, jasmonic acid biosynthetic process, response to wounding, defense response; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Lipoxygenase, C-terminal (InterPro:IPR013819), Lipoxygenase (InterPro:IPR000907), Lipoxygenase, plant (InterPro:IPR001246); BEST Arabidopsis thaliana protein match is: LOX3; electron carrier/ iron ion binding / lipoxygenase/ metal ion binding / oxidoreductase, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (TAIR:AT1G17420.1); Has 1119 Blast hits to 1103 proteins in 149 species: Archae - 0; Bacteria - 68; Metazoa - 485; Fungi - 38; Plants - 512; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G72520.1p  transcript_id AT1G72520.1  protein_id AT1G72520.1p  transcript_id AT1G72520.1  
At1g72530	chr1:027312999	0.0	W/27312999-27313258,27313348-27313445,27313546-27313611,27313783-27313937	AT1G72530.2  CDS  gene_syn F28P22.28, F28P22_28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product plastid developmental protein DAG, putative  note plastid developmental protein DAG, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15000.1).  protein_id AT1G72530.2p  transcript_id AT1G72530.2  protein_id AT1G72530.2p  transcript_id AT1G72530.2  
At1g72530	chr1:027312999	0.0	W/27312999-27313258,27313348-27313445,27313546-27313611,27313795-27313937	AT1G72530.1  CDS  gene_syn F28P22.28, F28P22_28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product plastid developmental protein DAG, putative  note plastid developmental protein DAG, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15000.1); Has 142 Blast hits to 130 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 142; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G72530.1p  transcript_id AT1G72530.1  protein_id AT1G72530.1p  transcript_id AT1G72530.1  
At1g72540	chr1:027316271	0.0	C/27316271-27316669,27316019-27316154,27315782-27315918,27315568-27315691,27314932-27315488	AT1G72540.1  CDS  gene_syn F28P22.27, F28P22_27  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT2G05940.1); Has 84468 Blast hits to 83384 proteins in 2628 species: Archae - 44; Bacteria - 7829; Metazoa - 36864; Fungi - 6705; Plants - 18432; Viruses - 308; Other Eukaryotes - 14286 (source: NCBI BLink).  protein_id AT1G72540.1p  transcript_id AT1G72540.1  protein_id AT1G72540.1p  transcript_id AT1G72540.1  
At1g72550	chr1:027323851	0.0	C/27323851-27323908,27323705-27323760,27323519-27323616,27323296-27323425,27323106-27323221,27322895-27322961,27322673-27322714,27322381-27322422,27322090-27322166,27321809-27321935,27321570-27321737,27321306-27321434,27321109-27321210,27320855-27320986,27320695-27320769,27320504-27320611,27320279-27320395,27320101-27320184,27319947-27320015	AT1G72550.1  CDS  gene_syn F28P22.26, F28P22_26  go_component cytoplasm|GO:0005737||IEA  go_process translation|GO:0006412||IEA  go_process phenylalanyl-tRNA aminoacylation|GO:0006432||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function RNA binding|GO:0003723||IEA  go_function phenylalanine-tRNA ligase activity|GO:0004826||IEA  go_function ATP binding|GO:0005524||IEA  go_component phenylalanine-tRNA ligase complex|GO:0009328||ISS  go_process phenylalanyl-tRNA aminoacylation|GO:0006432||ISS  go_function phenylalanine-tRNA ligase activity|GO:0004826||ISS  product tRNA synthetase beta subunit family protein  note tRNA synthetase beta subunit family protein; FUNCTIONS IN: phenylalanine-tRNA ligase activity, RNA binding, magnesium ion binding, nucleotide binding, ATP binding; INVOLVED IN: phenylalanyl-tRNA aminoacylation, translation; LOCATED IN: phenylalanine-tRNA ligase complex, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Putative DNA binding (InterPro:IPR009061), tRNA synthetase, B5 (InterPro:IPR005147), Phenylalanyl-tRNA synthetase, class IIc, beta subunit, archae/euk cytosolic (InterPro:IPR004531), B3/B4 tRNA-binding domain (InterPro:IPR005146); Has 4167 Blast hits to 4156 proteins in 1468 species: Archae - 162; Bacteria - 2372; Metazoa - 222; Fungi - 98; Plants - 28; Viruses - 0; Other Eukaryotes - 1285 (source: NCBI BLink).  protein_id AT1G72550.1p  transcript_id AT1G72550.1  protein_id AT1G72550.1p  transcript_id AT1G72550.1  
At1g72550	chr1:027323851	0.0	C/27323851-27323908,27323705-27323760,27323519-27323616,27323296-27323425,27323106-27323221,27322895-27322961,27322673-27322714,27322381-27322422,27322090-27322166,27321809-27321935,27321570-27321737,27321306-27321434,27321109-27321210,27320855-27320986,27320695-27320769,27320504-27320611,27320279-27320395,27320101-27320184,27319999-27320025	AT1G72550.2  CDS  gene_syn F28P22.26, F28P22_26  go_component cytoplasm|GO:0005737||IEA  go_process translation|GO:0006412||IEA  go_process phenylalanyl-tRNA aminoacylation|GO:0006432||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function RNA binding|GO:0003723||IEA  go_function phenylalanine-tRNA ligase activity|GO:0004826||IEA  go_function ATP binding|GO:0005524||IEA  go_component phenylalanine-tRNA ligase complex|GO:0009328||ISS  go_process phenylalanyl-tRNA aminoacylation|GO:0006432||ISS  go_function phenylalanine-tRNA ligase activity|GO:0004826||ISS  product tRNA synthetase beta subunit family protein  note tRNA synthetase beta subunit family protein; FUNCTIONS IN: RNA binding, phenylalanine-tRNA ligase activity, magnesium ion binding, nucleotide binding, ATP binding; INVOLVED IN: phenylalanyl-tRNA aminoacylation, translation; LOCATED IN: phenylalanine-tRNA ligase complex, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Putative DNA binding (InterPro:IPR009061), tRNA synthetase, B5 (InterPro:IPR005147), Phenylalanyl-tRNA synthetase, class IIc, beta subunit, archae/euk cytosolic (InterPro:IPR004531), B3/B4 tRNA-binding domain (InterPro:IPR005146); Has 3866 Blast hits to 3855 proteins in 1373 species: Archae - 162; Bacteria - 2195; Metazoa - 222; Fungi - 98; Plants - 28; Viruses - 0; Other Eukaryotes - 1161 (source: NCBI BLink).  protein_id AT1G72550.2p  transcript_id AT1G72550.2  protein_id AT1G72550.2p  transcript_id AT1G72550.2  
At1g72560	chr1:027327746	0.0	C/27327746-27329467,27327526-27327615,27327322-27327411,27327121-27327225,27326957-27327016,27326719-27326781,27326505-27326600,27326129-27326293,27325836-27326009,27325671-27325736,27325485-27325583,27325217-27325363,27325026-27325115	AT1G72560.1  CDS  gene_syn F28P22.25, F28P22_25, PAUSED, PSD  gene PSD  function Encodes a karyopherin, specifically the Arabidopsis ortholog of LOS1/XPOT, a protein that mediates nuclear export of tRNAs in yeast and mammals. PSD is capable of rescuing the tRNA export defect of los1 in S. cerevisiae. psd mutants display disrupted initiation of the shoot apical meristem and delay leaf initiation after germination; they also display delayed transition from vegetative to reproductive development.  go_process tRNA export from nucleus|GO:0006409|12913168|IGI  go_process tRNA export from nucleus|GO:0006409||ISS  go_process flower development|GO:0009908|12913148|IMP  go_process meristem initiation|GO:0010014|12913168|IMP  go_function tRNA binding|GO:0000049||ISS  go_function nucleobase, nucleoside, nucleotide and nucleic acid transmembrane transporter activity|GO:0015932|12913168|IGI  product PSD (PAUSED); nucleobase, nucleoside, nucleotide and nucleic acid transmembrane transporter/ tRNA binding  note PAUSED (PSD); FUNCTIONS IN: nucleobase, nucleoside, nucleotide and nucleic acid transmembrane transporter activity, tRNA binding; INVOLVED IN: flower development, meristem initiation, tRNA export from nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exportin-1/Importin-beta-like (InterPro:IPR013598), Armadillo-type fold (InterPro:IPR016024); Has 494 Blast hits to 478 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 196; Fungi - 176; Plants - 38; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT1G72560.1p  transcript_id AT1G72560.1  protein_id AT1G72560.1p  transcript_id AT1G72560.1  
At1g72560	chr1:027327746	0.0	C/27327746-27329467,27327526-27327615,27327322-27327411,27327121-27327225,27326957-27327016,27326719-27326781,27326505-27326600,27326129-27326293,27325836-27326009,27325671-27325736,27325485-27325583,27325217-27325363,27325026-27325115	AT1G72560.2  CDS  gene_syn F28P22.25, F28P22_25, PAUSED, PSD  gene PSD  function Encodes a karyopherin, specifically the Arabidopsis ortholog of LOS1/XPOT, a protein that mediates nuclear export of tRNAs in yeast and mammals. PSD is capable of rescuing the tRNA export defect of los1 in S. cerevisiae. psd mutants display disrupted initiation of the shoot apical meristem and delay leaf initiation after germination; they also display delayed transition from vegetative to reproductive development.  go_process tRNA export from nucleus|GO:0006409|12913168|IGI  go_process tRNA export from nucleus|GO:0006409||ISS  go_process flower development|GO:0009908|12913148|IMP  go_process meristem initiation|GO:0010014|12913168|IMP  go_function tRNA binding|GO:0000049||ISS  go_function nucleobase, nucleoside, nucleotide and nucleic acid transmembrane transporter activity|GO:0015932|12913168|IGI  product PSD (PAUSED); nucleobase, nucleoside, nucleotide and nucleic acid transmembrane transporter/ tRNA binding  note PAUSED (PSD); FUNCTIONS IN: nucleobase, nucleoside, nucleotide and nucleic acid transmembrane transporter activity, tRNA binding; INVOLVED IN: flower development, meristem initiation, tRNA export from nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exportin-1/Importin-beta-like (InterPro:IPR013598), Armadillo-type fold (InterPro:IPR016024); Has 494 Blast hits to 478 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 196; Fungi - 176; Plants - 38; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT1G72560.2p  transcript_id AT1G72560.2  protein_id AT1G72560.2p  transcript_id AT1G72560.2  
At1g72570	chr1:027331381	0.0	W/27331381-27331468,27331564-27332161,27332341-27332423,27332550-27332558,27332715-27332803,27333034-27333107,27333211-27333261,27333363-27333439,27333520-27333698	AT1G72570.1  CDS  gene_syn F28P22.24, F28P22_24  go_component nucleus|GO:0005634|10948255|IC  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process organ morphogenesis|GO:0009887|8742707|ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|10948255|ISS  go_function transcription factor activity|GO:0003700|10948255|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product DNA binding / transcription factor  note DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: organ morphogenesis, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ANT (AINTEGUMENTA); DNA binding / transcription factor (TAIR:AT4G37750.1); Has 4775 Blast hits to 3341 proteins in 203 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 4699; Viruses - 3; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT1G72570.1p  transcript_id AT1G72570.1  protein_id AT1G72570.1p  transcript_id AT1G72570.1  
At1g72580	chr1:027334406	0.0	C/27334406-27334702	AT1G72580.1  CDS  gene_syn F28P22.23, F28P22_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G72580.1p  transcript_id AT1G72580.1  protein_id AT1G72580.1p  transcript_id AT1G72580.1  
At1g72590	chr1:027335601	0.0	W/27335601-27335768,27335872-27336161,27336232-27336460,27336524-27336622,27336723-27336794,27336885-27336989	AT1G72590.1  CDS  gene_syn F28P22.22, F28P22_22  go_component cytoplasm|GO:0005737||IEA  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function oxidoreductase activity, acting on the CH-CH group of donors|GO:0016627||IEA  go_function 3-oxo-5-alpha-steroid 4-dehydrogenase activity|GO:0003865||ISS  product 3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein  note 3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein; FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors, 3-oxo-5-alpha-steroid 4-dehydrogenase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system, integral to membrane, cytoplasm; CONTAINS InterPro DOMAIN/s: 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal (InterPro:IPR001104); BEST Arabidopsis thaliana protein match is: 3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein (TAIR:AT2G16530.1); Has 828 Blast hits to 828 proteins in 148 species: Archae - 0; Bacteria - 18; Metazoa - 332; Fungi - 127; Plants - 87; Viruses - 0; Other Eukaryotes - 264 (source: NCBI BLink).  protein_id AT1G72590.1p  transcript_id AT1G72590.1  protein_id AT1G72590.1p  transcript_id AT1G72590.1  
At1g72600	chr1:027338272	0.0	W/27338272-27338679	AT1G72600.1  CDS  gene_syn F28P22.21, F28P22_21  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 393 Blast hits to 371 proteins in 75 species: Archae - 2; Bacteria - 10; Metazoa - 117; Fungi - 48; Plants - 173; Viruses - 2; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT1G72600.1p  transcript_id AT1G72600.1  protein_id AT1G72600.1p  transcript_id AT1G72600.1  
At1g72610	chr1:027339302	0.0	C/27339302-27339928	AT1G72610.1  CDS  gene_syn A. THALIANA GERMIN-LIKE PROTEIN 1, ATGER1, F28P22.20, F28P22_20, GER1, GERMIN-LIKE PROTEIN 1, GLP1  gene GER1  function germin-like protein (GLP1)  go_component extracellular matrix|GO:0031012|10987552|IDA  go_process biological_process|GO:0008150||ND  go_function oxalate oxidase activity|GO:0050162|10987552|IDA  product GER1 (GERMIN-LIKE PROTEIN 1); oxalate oxidase  note GERMIN-LIKE PROTEIN 1 (GER1); FUNCTIONS IN: oxalate oxidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: extracellular matrix; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), Germin (InterPro:IPR001929), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: GER3 (GERMIN 3); oxalate oxidase (TAIR:AT5G20630.1); Has 887 Blast hits to 886 proteins in 99 species: Archae - 0; Bacteria - 44; Metazoa - 0; Fungi - 31; Plants - 804; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G72610.1p  transcript_id AT1G72610.1  protein_id AT1G72610.1p  transcript_id AT1G72610.1  
At1g72620	chr1:027341079	0.0	W/27341079-27341810,27341940-27342020,27342106-27342173,27342287-27342401	AT1G72620.1  CDS  gene_syn F28P22.19, F28P22_19  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT1G17430.1); Has 4250 Blast hits to 4249 proteins in 755 species: Archae - 43; Bacteria - 2825; Metazoa - 138; Fungi - 10; Plants - 180; Viruses - 0; Other Eukaryotes - 1054 (source: NCBI BLink).  protein_id AT1G72620.1p  transcript_id AT1G72620.1  protein_id AT1G72620.1p  transcript_id AT1G72620.1  
At1g72630	chr1:027344988	0.0	W/27344988-27345347	AT1G72630.1  CDS  gene_syn ELF4-L2, ELF4-Like 2, F28P22.18, F28P22_18  gene ELF4-L2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ELF4-L2 (ELF4-Like 2)  note ELF4-Like 2 (ELF4-L2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1313 (InterPro:IPR009741); BEST Arabidopsis thaliana protein match is: ELF4-L4 (ELF4-Like 4) (TAIR:AT1G17455.2); Has 69 Blast hits to 68 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G72630.1p  transcript_id AT1G72630.1  protein_id AT1G72630.1p  transcript_id AT1G72630.1  
At1g72640	chr1:027347961	0.0	C/27347961-27348147,27347770-27347856,27347585-27347658,27347394-27347489,27347231-27347308,27347085-27347147,27346746-27346919,27346569-27346664,27346409-27346489	AT1G72640.2  CDS  gene_syn F28P22.17, F28P22_17  go_component chloroplast|GO:0009507|18431481|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  product binding / catalytic  note binding / catalytic; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: binding / catalytic (TAIR:AT4G31530.1); Has 345 Blast hits to 341 proteins in 86 species: Archae - 4; Bacteria - 214; Metazoa - 5; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT1G72640.2p  transcript_id AT1G72640.2  protein_id AT1G72640.2p  transcript_id AT1G72640.2  
At1g72640	chr1:027347961	0.0	C/27347961-27348147,27347770-27347856,27347585-27347661,27347394-27347489,27347231-27347308,27347085-27347147,27346746-27346919,27346569-27346664,27346409-27346489	AT1G72640.1  CDS  gene_syn F28P22.17, F28P22_17  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  product binding / catalytic  note binding / catalytic; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: binding / catalytic (TAIR:AT4G31530.1); Has 346 Blast hits to 341 proteins in 86 species: Archae - 4; Bacteria - 214; Metazoa - 5; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT1G72640.1p  transcript_id AT1G72640.1  protein_id AT1G72640.1p  transcript_id AT1G72640.1  
At1g72645	chr1:027348612	0.0	W/27348612-27348869	AT1G72645.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G72645.1p  transcript_id AT1G72645.1  protein_id AT1G72645.1p  transcript_id AT1G72645.1  
At1g72650	chr1:027350253	0.0	W/27350253-27350378,27350599-27350836,27351194-27351246,27351418-27352308,27352549-27352686,27352861-27353145,27353222-27353278,27353397-27353483	AT1G72650.1  CDS  gene_syn F28P22.16, F28P22_16, TRF-LIKE 6, TRFL6  gene TRFL6  function Arabidopsis thaliana myb family transcription factor (At1g72650)  go_function DNA binding|GO:0003677||IEA  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product TRFL6 (TRF-LIKE 6); DNA binding / transcription factor  note TRF-LIKE 6 (TRFL6); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to cadmium ion, response to salt stress; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRFL3 (TRF-LIKE 3); DNA binding / transcription factor (TAIR:AT1G17460.1); Has 496 Blast hits to 488 proteins in 90 species: Archae - 0; Bacteria - 16; Metazoa - 108; Fungi - 25; Plants - 266; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).  protein_id AT1G72650.1p  transcript_id AT1G72650.1  protein_id AT1G72650.1p  transcript_id AT1G72650.1  
At1g72650	chr1:027350253	0.0	W/27350253-27350378,27350599-27350836,27351194-27351264,27351418-27352308,27352549-27352686,27352861-27353145,27353222-27353278,27353397-27353483	AT1G72650.2  CDS  gene_syn F28P22.16, F28P22_16, TRF-LIKE 6, TRFL6  gene TRFL6  function Arabidopsis thaliana myb family transcription factor (At1g72650)  go_function DNA binding|GO:0003677||IEA  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product TRFL6 (TRF-LIKE 6); DNA binding / transcription factor  note TRF-LIKE 6 (TRFL6); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to cadmium ion, response to salt stress; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRFL3 (TRF-LIKE 3); DNA binding / transcription factor (TAIR:AT1G17460.1); Has 510 Blast hits to 502 proteins in 94 species: Archae - 0; Bacteria - 16; Metazoa - 114; Fungi - 27; Plants - 266; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).  protein_id AT1G72650.2p  transcript_id AT1G72650.2  protein_id AT1G72650.2p  transcript_id AT1G72650.2  
At1g72660	chr1:027354161	0.0	W/27354161-27354230,27354348-27354415,27354497-27354573,27354669-27354849,27354935-27354991,27355098-27355172,27355337-27355456,27355620-27355790,27355950-27356063,27356195-27356365,27356448-27356543	AT1G72660.1  CDS  gene_syn F28P22.15, F28P22_15  go_component intracellular|GO:0005622||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product developmentally regulated GTP-binding protein, putative  note developmentally regulated GTP-binding protein, putative; FUNCTIONS IN: GTP binding; LOCATED IN: intracellular; EXPRESSED IN: flower, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), TGS (InterPro:IPR004095), GTP1/OBG (InterPro:IPR006073), GTP1/OBG, conserved site (InterPro:IPR006074), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: ATDRG1 (ARABIDOPSIS THALIANA DEVELOPMENTALLY REGULATED G-PROTEIN 1); GTP binding / GTPase (TAIR:AT1G17470.2); Has 12683 Blast hits to 12670 proteins in 1593 species: Archae - 465; Bacteria - 6581; Metazoa - 746; Fungi - 378; Plants - 191; Viruses - 0; Other Eukaryotes - 4322 (source: NCBI BLink).  protein_id AT1G72660.1p  transcript_id AT1G72660.1  protein_id AT1G72660.1p  transcript_id AT1G72660.1  
At1g72660	chr1:027354161	0.0	W/27354161-27354230,27354348-27354415,27354497-27354573,27354669-27354849,27354935-27354991,27355098-27355172,27355337-27355456,27355620-27355790,27355950-27356063,27356195-27356365,27356448-27356543	AT1G72660.2  CDS  gene_syn F28P22.15, F28P22_15  go_component intracellular|GO:0005622||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product developmentally regulated GTP-binding protein, putative  note developmentally regulated GTP-binding protein, putative; FUNCTIONS IN: GTP binding; LOCATED IN: intracellular; EXPRESSED IN: flower, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), TGS (InterPro:IPR004095), GTP1/OBG (InterPro:IPR006073), GTP1/OBG, conserved site (InterPro:IPR006074), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: ATDRG1 (ARABIDOPSIS THALIANA DEVELOPMENTALLY REGULATED G-PROTEIN 1); GTP binding / GTPase (TAIR:AT1G17470.2); Has 12683 Blast hits to 12670 proteins in 1593 species: Archae - 465; Bacteria - 6581; Metazoa - 746; Fungi - 378; Plants - 191; Viruses - 0; Other Eukaryotes - 4322 (source: NCBI BLink).  protein_id AT1G72660.2p  transcript_id AT1G72660.2  protein_id AT1G72660.2p  transcript_id AT1G72660.2  
At1g72660	chr1:027354161	0.0	W/27354161-27354230,27354348-27354415,27354497-27354573,27354669-27354849,27354935-27354991,27355098-27355172,27355337-27355456,27355620-27355790,27355950-27356063,27356195-27356365,27356448-27356543	AT1G72660.3  CDS  gene_syn F28P22.15, F28P22_15  go_component intracellular|GO:0005622||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product developmentally regulated GTP-binding protein, putative  note developmentally regulated GTP-binding protein, putative; FUNCTIONS IN: GTP binding; LOCATED IN: intracellular; EXPRESSED IN: flower, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), TGS (InterPro:IPR004095), GTP1/OBG (InterPro:IPR006073), GTP1/OBG, conserved site (InterPro:IPR006074), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: ATDRG1 (ARABIDOPSIS THALIANA DEVELOPMENTALLY REGULATED G-PROTEIN 1); GTP binding / GTPase (TAIR:AT1G17470.2); Has 12683 Blast hits to 12670 proteins in 1593 species: Archae - 465; Bacteria - 6581; Metazoa - 746; Fungi - 378; Plants - 191; Viruses - 0; Other Eukaryotes - 4322 (source: NCBI BLink).  protein_id AT1G72660.3p  transcript_id AT1G72660.3  protein_id AT1G72660.3p  transcript_id AT1G72660.3  
At1g72670	chr1:027358592	0.0	C/27358592-27358657,27358254-27358508,27357777-27357998,27357577-27357690,27356898-27357485	AT1G72670.1  CDS  gene_syn F28P22.14, F28P22_14, IQ-domain 8, iqd8  gene iqd8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product iqd8 (IQ-domain 8); calmodulin binding  note IQ-domain 8 (iqd8); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQD7 (IQ-domain 7); calmodulin binding (TAIR:AT1G17480.1); Has 462 Blast hits to 458 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 32; Fungi - 11; Plants - 409; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G72670.1p  transcript_id AT1G72670.1  protein_id AT1G72670.1p  transcript_id AT1G72670.1  
At1g72680	chr1:027360785	0.0	C/27360785-27360876,27360603-27360716,27360290-27360517,27359866-27360151,27359632-27359782,27359346-27359542	AT1G72680.1  CDS  gene_syn ATCAD1, CAD1, CINNAMYL ALCOHOL DEHYDROGENASE 1, CINNAMYL-ALCOHOL DEHYDROGENASE, F28P22.13, F28P22_13  gene CAD1  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_function cofactor binding|GO:0048037||IEA  go_process lignin biosynthetic process|GO:0009809|8219046|TAS  product cinnamyl-alcohol dehydrogenase, putative  note CINNAMYL-ALCOHOL DEHYDROGENASE (CAD1); FUNCTIONS IN: in 6 functions; INVOLVED IN: lignin biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9); binding / catalytic/ oxidoreductase/ zinc ion binding (TAIR:AT4G39330.1); Has 23189 Blast hits to 23173 proteins in 1855 species: Archae - 343; Bacteria - 12927; Metazoa - 1262; Fungi - 1827; Plants - 2355; Viruses - 3; Other Eukaryotes - 4472 (source: NCBI BLink).  protein_id AT1G72680.1p  transcript_id AT1G72680.1  protein_id AT1G72680.1p  transcript_id AT1G72680.1  
At1g72690	chr1:027361223	0.0	W/27361223-27361244,27361504-27361745	AT1G72690.1  CDS  gene_syn F28P22.12, F28P22_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57000.2); Has 29 Blast hits to 23 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G72690.1p  transcript_id AT1G72690.1  protein_id AT1G72690.1p  transcript_id AT1G72690.1  
At1g72700	chr1:027366910	0.0	W/27366910-27368717,27368804-27368914,27369003-27369279,27369364-27369452,27369555-27369642,27369747-27369956,27370087-27370212,27370342-27370440,27370519-27370710,27370805-27371491	AT1G72700.1  CDS  gene_syn F28P22.11, F28P22_11  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process ATP biosynthetic process|GO:0006754||IEA  go_process phospholipid transport|GO:0015914||IEA  go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662||ISS  product haloacid dehalogenase-like hydrolase family protein  note haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: ATP biosynthetic process, phospholipid transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, phospholipid-translocating, flippase (InterPro:IPR006539), ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), HAD superfamily hydrolase-like, type 3 (InterPro:IPR013200); BEST Arabidopsis thaliana protein match is: ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism (TAIR:AT1G17500.1); Has 8696 Blast hits to 7667 proteins in 939 species: Archae - 81; Bacteria - 1972; Metazoa - 3111; Fungi - 1403; Plants - 517; Viruses - 3; Other Eukaryotes - 1609 (source: NCBI BLink).  protein_id AT1G72700.1p  transcript_id AT1G72700.1  protein_id AT1G72700.1p  transcript_id AT1G72700.1  
At1g72710	chr1:027372553	0.0	W/27372553-27372628,27372716-27372756,27373581-27373650,27373744-27373892,27373970-27374065,27374146-27374213,27374564-27374625,27374709-27374772,27374859-27374943,27375020-27375146,27375255-27375337,27375411-27375474,27375585-27375721,27375903-27376178	AT1G72710.1  CDS  gene_syn CASEIN KINASE 1-LIKE PROTEIN 2, CKL2, F28P22.10, F28P22_10  gene CKL2  function Encodes a member of the casein kinase 1 protein family that is localized to the cytoplasm and nucleus.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component nucleus|GO:0005634|16126836|IDA  go_component cytoplasm|GO:0005737|16126836|IDA  go_function kinase activity|GO:0016301||ISS  product CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note CASEIN KINASE 1-LIKE PROTEIN 2 (CKL2); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CK1 (CASEIN KINASE 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT4G26100.1); Has 52779 Blast hits to 47362 proteins in 1399 species: Archae - 11; Bacteria - 5537; Metazoa - 20443; Fungi - 4392; Plants - 7031; Viruses - 366; Other Eukaryotes - 14999 (source: NCBI BLink).  protein_id AT1G72710.1p  transcript_id AT1G72710.1  protein_id AT1G72710.1p  transcript_id AT1G72710.1  
At1g72720	chr1:027376903	0.0	C/27376903-27377286	AT1G72720.1  CDS  gene_syn F28P22.9, F28P22_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11970.1); Has 123 Blast hits to 123 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 123; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G72720.1p  transcript_id AT1G72720.1  protein_id AT1G72720.1p  transcript_id AT1G72720.1  
At1g72730	chr1:027379526	0.0	C/27379526-27379593,27379340-27379449,27378766-27379196,27378040-27378675	AT1G72730.1  CDS  gene_syn F28P22.8, F28P22_8  go_component plasma membrane|GO:0005886|17151019|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process biological_process|GO:0008150||ND  go_function ATP-dependent helicase activity|GO:0008026||ISS  product eukaryotic translation initiation factor 4A, putative / eIF-4A, putative  note eukaryotic translation initiation factor 4A, putative / eIF-4A, putative; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, plasma membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1); ATP-dependent helicase/ translation initiation factor (TAIR:AT3G13920.1); Has 31616 Blast hits to 31226 proteins in 1784 species: Archae - 458; Bacteria - 14276; Metazoa - 4974; Fungi - 3353; Plants - 1386; Viruses - 16; Other Eukaryotes - 7153 (source: NCBI BLink).  protein_id AT1G72730.1p  transcript_id AT1G72730.1  protein_id AT1G72730.1p  transcript_id AT1G72730.1  
At1g72740	chr1:027382538	0.0	C/27382538-27382687,27381934-27382148,27381706-27381790,27381147-27381248,27380622-27380901,27380499-27380530	AT1G72740.1  CDS  gene_syn F28P22.7, F28P22_7  go_process nucleosome assembly|GO:0006334||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  product DNA-binding family protein / histone H1/H5 family protein  note DNA-binding family protein / histone H1/H5 family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: nucleosome assembly, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Histone H1/H5 (InterPro:IPR005818), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT1G17520.1); Has 533 Blast hits to 527 proteins in 97 species: Archae - 0; Bacteria - 0; Metazoa - 76; Fungi - 46; Plants - 372; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT1G72740.1p  transcript_id AT1G72740.1  protein_id AT1G72740.1p  transcript_id AT1G72740.1  
At1g72740	chr1:027382538	0.0	C/27382538-27382687,27381934-27382148,27381706-27381790,27381165-27381248,27380622-27380901,27380499-27380530	AT1G72740.2  CDS  gene_syn F28P22.7, F28P22_7  go_process nucleosome assembly|GO:0006334||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  product DNA-binding family protein / histone H1/H5 family protein  note DNA-binding family protein / histone H1/H5 family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: nucleosome assembly, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Histone H1/H5 (InterPro:IPR005818), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT1G17520.1); Has 563 Blast hits to 555 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 84; Fungi - 46; Plants - 394; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT1G72740.2p  transcript_id AT1G72740.2  protein_id AT1G72740.2p  transcript_id AT1G72740.2  
At1g72750	chr1:027383577	0.0	W/27383577-27384143	AT1G72750.1  CDS  gene_syn ATTIM23-2  gene ATTIM23-2  go_component membrane|GO:0016020|17432890|IDA  go_process intracellular protein transport|GO:0006886||IEA  go_process protein transport|GO:0015031||IEA  go_function protein transporter activity|GO:0008565||IEA  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|14730085|IDA  go_component mitochondrial inner membrane|GO:0005743|14730085|IDA  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744||ISS  go_process protein transport|GO:0015031||ISS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product ATTIM23-2; P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter  note ATTIM23-2; FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, protein transport; LOCATED IN: mitochondrion, mitochondrial inner membrane, mitochondrial inner membrane presequence translocase complex, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial import inner membrane translocase, subunit Tim23 (InterPro:IPR005681), Mitochondrial import inner membrane translocase, subunit Tim17/22 (InterPro:IPR003397); BEST Arabidopsis thaliana protein match is: ATTIM23-1 (TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 23); P-P-bond-hydrolysis-driven protein transmembrane transporter (TAIR:AT1G17530.1); Has 457 Blast hits to 457 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 249; Fungi - 93; Plants - 87; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT1G72750.1p  transcript_id AT1G72750.1  protein_id AT1G72750.1p  transcript_id AT1G72750.1  
At1g72760	chr1:027388121	0.0	C/27388121-27388274,27387950-27388041,27387724-27387848,27387450-27387635,27387139-27387355,27387017-27387052,27386845-27386934,27386398-27386772,27385959-27386322,27385421-27385875	AT1G72760.1  CDS  gene_syn F28P22.5, F28P22_5  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: kinase (TAIR:AT1G17540.1); Has 81584 Blast hits to 80415 proteins in 3336 species: Archae - 66; Bacteria - 7338; Metazoa - 35964; Fungi - 6161; Plants - 18154; Viruses - 276; Other Eukaryotes - 13625 (source: NCBI BLink).  protein_id AT1G72760.1p  transcript_id AT1G72760.1  protein_id AT1G72760.1p  transcript_id AT1G72760.1  
At1g72770	chr1:027390998	0.0	W/27390998-27391744,27391856-27392203,27392288-27392393,27392517-27392851	AT1G72770.1  CDS  gene_syn F28P22.4, F28P22_4, HAB1, HOMOLOGY TO ABI1  gene HAB1  function mutant has ABA hypersensitive inhibition of seed germination; Protein Phosphatase 2C  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product HAB1 (HOMOLOGY TO ABI1); catalytic/ protein serine/threonine phosphatase  note HOMOLOGY TO ABI1 (HAB1); FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: HAB2; catalytic/ protein serine/threonine phosphatase (TAIR:AT1G17550.1); Has 4368 Blast hits to 4363 proteins in 296 species: Archae - 0; Bacteria - 134; Metazoa - 1404; Fungi - 505; Plants - 1351; Viruses - 7; Other Eukaryotes - 967 (source: NCBI BLink).  protein_id AT1G72770.1p  transcript_id AT1G72770.1  protein_id AT1G72770.1p  transcript_id AT1G72770.1  
At1g72770	chr1:027390998	0.0	W/27390998-27391744,27391856-27392203,27392288-27392413	AT1G72770.2  CDS  gene_syn F28P22.4, F28P22_4, HAB1, HOMOLOGY TO ABI1  gene HAB1  function mutant has ABA hypersensitive inhibition of seed germination; Protein Phosphatase 2C  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product HAB1 (HOMOLOGY TO ABI1); catalytic/ protein serine/threonine phosphatase  note HOMOLOGY TO ABI1 (HAB1); FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: HAB2; catalytic/ protein serine/threonine phosphatase (TAIR:AT1G17550.1); Has 3370 Blast hits to 3369 proteins in 219 species: Archae - 0; Bacteria - 2; Metazoa - 1127; Fungi - 351; Plants - 1108; Viruses - 4; Other Eukaryotes - 778 (source: NCBI BLink).  protein_id AT1G72770.2p  transcript_id AT1G72770.2  protein_id AT1G72770.2p  transcript_id AT1G72770.2  
At1g72780	chr1:027393385	0.0	W/27393385-27393466	AT1G72780.1  tRNA  gene_syn 60047.TRNA-SER-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT1G72780.1  
At1g72790	chr1:027394848	0.0	W/27394848-27396533	AT1G72790.1  CDS  gene_syn F28P22.2, F28P22_2  go_component plasma membrane|GO:0005886|17317660|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G57070.1); Has 15974 Blast hits to 9634 proteins in 554 species: Archae - 27; Bacteria - 1047; Metazoa - 6923; Fungi - 2241; Plants - 3444; Viruses - 523; Other Eukaryotes - 1769 (source: NCBI BLink).  protein_id AT1G72790.1p  transcript_id AT1G72790.1  protein_id AT1G72790.1p  transcript_id AT1G72790.1  
At1g72800	chr1:027397266	0.0	W/27397266-27398273	AT1G72800.1  CDS  gene_syn F28P22.1, F28P22_1  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nuM1-related  note nuM1-related; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: ATNUC-L1; nucleic acid binding / nucleotide binding (TAIR:AT1G48920.1); Has 288 Blast hits to 241 proteins in 64 species: Archae - 2; Bacteria - 68; Metazoa - 25; Fungi - 52; Plants - 118; Viruses - 2; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G72800.1p  transcript_id AT1G72800.1  protein_id AT1G72800.1p  transcript_id AT1G72800.1  
At1g72810	chr1:027399782	0.0	C/27399782-27400393,27398760-27399698	AT1G72810.1  CDS  gene_syn F3N23.1, F3N23_1  go_component chloroplast|GO:0009507||IEA  go_process amino acid metabolic process|GO:0006520||IEA  go_process metabolic process|GO:0008152||IEA  go_process threonine biosynthetic process|GO:0009088||IEA  go_function catalytic activity|GO:0003824||IEA  go_function threonine synthase activity|GO:0004795||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_process threonine biosynthetic process|GO:0009088||ISS  go_function threonine synthase activity|GO:0004795||ISS  product threonine synthase, putative  note threonine synthase, putative; FUNCTIONS IN: pyridoxal phosphate binding, catalytic activity, threonine synthase activity; INVOLVED IN: amino acid metabolic process, threonine biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Threonine synthase (InterPro:IPR004450), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Serine/threonine dehydratase, pyridoxal-phosphate-binding site (InterPro:IPR000634); BEST Arabidopsis thaliana protein match is: MTO2 (METHIONINE OVER-ACCUMULATOR 2); threonine synthase (TAIR:AT4G29840.1); Has 4477 Blast hits to 4477 proteins in 1079 species: Archae - 221; Bacteria - 2211; Metazoa - 69; Fungi - 16; Plants - 54; Viruses - 0; Other Eukaryotes - 1906 (source: NCBI BLink).  protein_id AT1G72810.1p  transcript_id AT1G72810.1  protein_id AT1G72810.1p  transcript_id AT1G72810.1  
At1g72820	chr1:027403457	0.0	W/27403457-27404506	AT1G72820.1  CDS  gene_syn F3N23.2, F3N23_2  go_component mitochondrial inner membrane|GO:0005743||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function binding|GO:0005488||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: mitochondrial substrate carrier family protein (TAIR:AT5G26200.1); Has 15067 Blast hits to 8914 proteins in 327 species: Archae - 0; Bacteria - 0; Metazoa - 7538; Fungi - 3966; Plants - 2251; Viruses - 0; Other Eukaryotes - 1312 (source: NCBI BLink).  protein_id AT1G72820.1p  transcript_id AT1G72820.1  protein_id AT1G72820.1p  transcript_id AT1G72820.1  
At1g72830	chr1:027406791	0.0	C/27406791-27407088,27406588-27406679,27406432-27406506,27406170-27406343,27405699-27406085	AT1G72830.2  CDS  gene_syn ATHAP2C, F3N23.3, F3N23_3, HAP2C, NF-YA3, NUCLEAR FACTOR Y, SUBUNIT A3  gene NF-YA3  function Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.  go_component CCAAT-binding factor complex|GO:0016602|9662544|ISS  go_component CCAAT-binding factor complex|GO:0016602||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355|9662544|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9662544|IGI  go_function transcription factor activity|GO:0003700||ISS  product NF-YA3 (NUCLEAR FACTOR Y, SUBUNIT A3); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT A3 (NF-YA3); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: NF-YA8 (NUCLEAR FACTOR Y, SUBUNIT A8); transcription factor (TAIR:AT1G17590.3); Has 442 Blast hits to 442 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 88; Plants - 215; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G72830.2p  transcript_id AT1G72830.2  protein_id AT1G72830.2p  transcript_id AT1G72830.2  
At1g72830	chr1:027406791	0.0	C/27406791-27407088,27406588-27406679,27406432-27406506,27406173-27406343,27405699-27406085	AT1G72830.1  CDS  gene_syn ATHAP2C, F3N23.3, F3N23_3, HAP2C, NF-YA3, NUCLEAR FACTOR Y, SUBUNIT A3  gene NF-YA3  function Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.  go_component CCAAT-binding factor complex|GO:0016602|9662544|ISS  go_component CCAAT-binding factor complex|GO:0016602||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355|9662544|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9662544|IGI  go_function transcription factor activity|GO:0003700||ISS  product NF-YA3 (NUCLEAR FACTOR Y, SUBUNIT A3); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT A3 (NF-YA3); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: NF-YA8 (NUCLEAR FACTOR Y, SUBUNIT A8); transcription factor (TAIR:AT1G17590.3); Has 442 Blast hits to 442 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 88; Plants - 215; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G72830.1p  transcript_id AT1G72830.1  protein_id AT1G72830.1p  transcript_id AT1G72830.1  
At1g72830	chr1:027406791	0.0	C/27406791-27407088,27406588-27406679,27406432-27406506,27406326-27406343,27406173-27406250,27405699-27406085	AT1G72830.3  CDS  gene_syn ATHAP2C, F3N23.3, F3N23_3, HAP2C, NF-YA3, NUCLEAR FACTOR Y, SUBUNIT A3  gene NF-YA3  function Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.  go_component CCAAT-binding factor complex|GO:0016602|9662544|ISS  go_component CCAAT-binding factor complex|GO:0016602||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355|9662544|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9662544|IGI  go_function transcription factor activity|GO:0003700||ISS  product NF-YA3 (NUCLEAR FACTOR Y, SUBUNIT A3); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT A3 (NF-YA3); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289); BEST Arabidopsis thaliana protein match is: NF-YA8 (NUCLEAR FACTOR Y, SUBUNIT A8); transcription factor (TAIR:AT1G17590.3); Has 432 Blast hits to 432 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 88; Plants - 210; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G72830.3p  transcript_id AT1G72830.3  protein_id AT1G72830.3p  transcript_id AT1G72830.3  
At1g72840	chr1:027413004	0.0	C/27413004-27413485,27411796-27412879,27411383-27411685,27410020-27411279	AT1G72840.1  CDS  gene_syn F3N23.4, F3N23_4  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product ATP binding / protein binding / transmembrane receptor  note ATP binding / protein binding / transmembrane receptor; FUNCTIONS IN: transmembrane receptor activity, protein binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: sperm cell, embryo, root, seed; EXPRESSED DURING: D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G09430.1); Has 17025 Blast hits to 12543 proteins in 489 species: Archae - 10; Bacteria - 980; Metazoa - 2382; Fungi - 116; Plants - 12926; Viruses - 0; Other Eukaryotes - 611 (source: NCBI BLink).  protein_id AT1G72840.1p  transcript_id AT1G72840.1  protein_id AT1G72840.1p  transcript_id AT1G72840.1  
At1g72850	chr1:027413971	0.0	W/27413971-27414389,27414486-27415335	AT1G72850.1  CDS  gene_syn F3N23.5, F3N23_5  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS class), putative  note disease resistance protein (TIR-NBS class), putative; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS class), putative (TAIR:AT4G09420.1); Has 5719 Blast hits to 5646 proteins in 190 species: Archae - 0; Bacteria - 20; Metazoa - 6; Fungi - 3; Plants - 5688; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G72850.1p  transcript_id AT1G72850.1  protein_id AT1G72850.1p  transcript_id AT1G72850.1  
At1g72855	chr1:027416232	0.0	W/27416232-27418323	AT1G72855.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G72860  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G72855.1  
At1g72860	chr1:027420315	0.0	C/27420315-27420778,27419114-27420227,27417096-27419009	AT1G72860.1  CDS  gene_syn F3N23.6, F3N23_6  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, protein binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: stem, leaf; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat 3 (InterPro:IPR011713), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT1G17600.1); Has 12376 Blast hits to 9274 proteins in 401 species: Archae - 4; Bacteria - 545; Metazoa - 1074; Fungi - 36; Plants - 10504; Viruses - 0; Other Eukaryotes - 213 (source: NCBI BLink).  protein_id AT1G72860.1p  transcript_id AT1G72860.1  protein_id AT1G72860.1p  transcript_id AT1G72860.1  
At1g72870	chr1:027421086	0.0	W/27421086-27421552,27421928-27422999	AT1G72870.1  CDS  gene_syn F3N23.7, F3N23_7  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS class), putative  note disease resistance protein (TIR-NBS class), putative; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: stem, sperm cell, root; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS class), putative (TAIR:AT1G72850.1); Has 5583 Blast hits to 5277 proteins in 187 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 5572; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G72870.1p  transcript_id AT1G72870.1  protein_id AT1G72870.1p  transcript_id AT1G72870.1  
At1g72880	chr1:027425636	0.0	C/27425636-27425928,27425432-27425526,27425167-27425234,27425034-27425077,27424874-27424951,27424647-27424800,27424336-27424488,27424107-27424214,27423946-27424011,27423678-27423776	AT1G72880.1  CDS  gene_syn F3N23.8, F3N23_8  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function acid phosphatase activity|GO:0003993||ISS  product acid phosphatase survival protein SurE, putative  note acid phosphatase survival protein SurE, putative; FUNCTIONS IN: hydrolase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Survival protein SurE-like phosphatase/nucleotidase (InterPro:IPR002828); BEST Arabidopsis thaliana protein match is: acid phosphatase survival protein SurE, putative (TAIR:AT4G14930.1); Has 3119 Blast hits to 3117 proteins in 955 species: Archae - 136; Bacteria - 2041; Metazoa - 0; Fungi - 8; Plants - 39; Viruses - 0; Other Eukaryotes - 895 (source: NCBI BLink).  protein_id AT1G72880.1p  transcript_id AT1G72880.1  protein_id AT1G72880.1p  transcript_id AT1G72880.1  
At1g72880	chr1:027425636	0.0	C/27425636-27425928,27425432-27425526,27425167-27425234,27425034-27425077,27424874-27424951,27424647-27424800,27424336-27424488,27424107-27424214,27423946-27424011,27423678-27423776	AT1G72880.2  CDS  gene_syn F3N23.8, F3N23_8  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function acid phosphatase activity|GO:0003993||ISS  product acid phosphatase survival protein SurE, putative  note acid phosphatase survival protein SurE, putative; FUNCTIONS IN: hydrolase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Survival protein SurE-like phosphatase/nucleotidase (InterPro:IPR002828); BEST Arabidopsis thaliana protein match is: acid phosphatase survival protein SurE, putative (TAIR:AT4G14930.1); Has 3119 Blast hits to 3117 proteins in 955 species: Archae - 136; Bacteria - 2041; Metazoa - 0; Fungi - 8; Plants - 39; Viruses - 0; Other Eukaryotes - 895 (source: NCBI BLink).  protein_id AT1G72880.2p  transcript_id AT1G72880.2  protein_id AT1G72880.2p  transcript_id AT1G72880.2  
At1g72890	chr1:027429947	0.0	W/27429947-27430497,27430952-27431717	AT1G72890.1  CDS  gene_syn F3N23.9, F3N23_9  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS class), putative  note disease resistance protein (TIR-NBS class), putative; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS class), putative (TAIR:AT1G72950.1); Has 4140 Blast hits to 4038 proteins in 196 species: Archae - 0; Bacteria - 57; Metazoa - 10; Fungi - 0; Plants - 4069; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G72890.1p  transcript_id AT1G72890.1  protein_id AT1G72890.1p  transcript_id AT1G72890.1  
At1g72900	chr1:027432216	0.0	W/27432216-27432679,27432905-27433532	AT1G72900.1  CDS  gene_syn F3N23.10, F3N23_10  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS class), putative  note disease resistance protein (TIR-NBS class), putative; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS class), putative (TAIR:AT1G72940.1); Has 3199 Blast hits to 3118 proteins in 128 species: Archae - 0; Bacteria - 15; Metazoa - 4; Fungi - 0; Plants - 3179; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G72900.1p  transcript_id AT1G72900.1  protein_id AT1G72900.1p  transcript_id AT1G72900.1  
At1g72910	chr1:027435634	0.0	W/27435634-27436088,27436200-27436887	AT1G72910.1  CDS  gene_syn F3N23.11, F3N23_11  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS class), putative  note disease resistance protein (TIR-NBS class), putative; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS class), putative (TAIR:AT1G72900.1); Has 3097 Blast hits to 3013 proteins in 136 species: Archae - 0; Bacteria - 43; Metazoa - 2; Fungi - 0; Plants - 3051; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G72910.1p  transcript_id AT1G72910.1  protein_id AT1G72910.1p  transcript_id AT1G72910.1  
At1g72920	chr1:027437947	0.0	W/27437947-27438410,27438505-27438868	AT1G72920.1  CDS  gene_syn F3N23.12, F3N23_12  go_component intrinsic to membrane|GO:0031224||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_process defense response|GO:0006952||ISS  go_process response to wounding|GO:0009611|17953483|IEP  product disease resistance protein (TIR-NBS class), putative  note disease resistance protein (TIR-NBS class), putative; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: response to wounding, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS class), putative (TAIR:AT1G72940.1); Has 921 Blast hits to 862 proteins in 48 species: Archae - 0; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 905; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G72920.1p  transcript_id AT1G72920.1  protein_id AT1G72920.1p  transcript_id AT1G72920.1  
At1g72930	chr1:027439476	0.0	W/27439476-27439930,27440072-27440147	AT1G72930.1  CDS  gene_syn F3N23.13, F3N23_13, TIR, TOLL/INTERLEUKIN-1 RECEPTOR-LIKE  gene TIR  function Toll/interleukin-1 receptor-like protein (TIR) mRNA,  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_process defense response|GO:0006952||ISS  product TIR (TOLL/INTERLEUKIN-1 RECEPTOR-LIKE); transmembrane receptor  note TOLL/INTERLEUKIN-1 RECEPTOR-LIKE (TIR); FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS class), putative (TAIR:AT1G72910.1); Has 919 Blast hits to 863 proteins in 56 species: Archae - 0; Bacteria - 29; Metazoa - 2; Fungi - 0; Plants - 888; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G72930.1p  transcript_id AT1G72930.1  protein_id AT1G72930.1p  transcript_id AT1G72930.1  
At1g72930	chr1:027439476	0.0	W/27439476-27439934	AT1G72930.2  CDS  gene_syn F3N23.13, F3N23_13, TIR, TOLL/INTERLEUKIN-1 RECEPTOR-LIKE  gene TIR  function Toll/interleukin-1 receptor-like protein (TIR) mRNA,  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_process defense response|GO:0006952||ISS  product TIR (TOLL/INTERLEUKIN-1 RECEPTOR-LIKE); transmembrane receptor  note TOLL/INTERLEUKIN-1 RECEPTOR-LIKE (TIR); FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS class), putative (TAIR:AT1G72910.1); Has 908 Blast hits to 855 proteins in 56 species: Archae - 0; Bacteria - 29; Metazoa - 2; Fungi - 0; Plants - 877; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G72930.2p  transcript_id AT1G72930.2  protein_id AT1G72930.2p  transcript_id AT1G72930.2  
At1g72940	chr1:027442278	0.0	W/27442278-27442741,27442836-27443487	AT1G72940.1  CDS  gene_syn F3N23.14, F3N23_14  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS class), putative  note disease resistance protein (TIR-NBS class), putative; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS class), putative (TAIR:AT1G72950.1); Has 3456 Blast hits to 3375 proteins in 127 species: Archae - 0; Bacteria - 9; Metazoa - 0; Fungi - 0; Plants - 3447; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G72940.1p  transcript_id AT1G72940.1  protein_id AT1G72940.1p  transcript_id AT1G72940.1  
At1g72950	chr1:027444585	0.0	W/27444585-27445051,27445142-27445814	AT1G72950.1  CDS  gene_syn F3N23.15, F3N23_15  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS class), putative  note disease resistance protein (TIR-NBS class), putative; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS class), putative (TAIR:AT1G72940.1); Has 3581 Blast hits to 3497 proteins in 149 species: Archae - 0; Bacteria - 26; Metazoa - 2; Fungi - 0; Plants - 3553; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G72950.1p  transcript_id AT1G72950.1  protein_id AT1G72950.1p  transcript_id AT1G72950.1  
At1g72960	chr1:027446734	0.0	W/27446734-27446752,27446848-27446914,27446991-27447093,27447190-27447260,27447354-27447417,27447514-27447579,27447679-27447726,27447808-27447870,27447957-27448013,27448121-27448279,27448343-27448411,27448519-27448610,27448759-27448837,27448953-27449243,27449313-27449575,27449668-27449764,27449845-27450006,27450087-27450191,27450270-27450364,27450448-27450544,27450683-27450862	AT1G72960.1  CDS  gene_syn F3N23.16, F3N23_16  go_component cellular_component|GO:0005575||ND  go_function nucleotide binding|GO:0000166||ISS  product root hair defective 3 GTP-binding (RHD3) family protein  note root hair defective 3 GTP-binding (RHD3) family protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Root hair defective 3 GTP-binding (InterPro:IPR008803); BEST Arabidopsis thaliana protein match is: RHD3 (ROOT HAIR DEFECTIVE 3); GTP binding (TAIR:AT3G13870.1); Has 285 Blast hits to 283 proteins in 121 species: Archae - 0; Bacteria - 2; Metazoa - 20; Fungi - 100; Plants - 59; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT1G72960.1p  transcript_id AT1G72960.1  protein_id AT1G72960.1p  transcript_id AT1G72960.1  
At1g72970	chr1:027452872	0.0	W/27452872-27452944,27453330-27453720,27454129-27454439,27454527-27454912,27454997-27455209,27455291-27455565,27455652-27455706	AT1G72970.2  CDS  gene_syn ACE, EDA17, F3N23.17, F3N23_17, HOTHEAD, HTH, embryo sac development arrest 17  gene HTH  function Originally identified as a mutation that causes floral organs to fuse together. About 10-20% of mutants also have defects in ovules. Mutants have reduced fertility most likely as because of fusions that pistil emergence. The protein has similarity to the mandelonitrile lyase family of FAD containing oxidoreductases and is predicted to be secreted (SignalP).It is expressed in all tissue layers of roots, inflorescences, stems, leaves, and flowers and is also expressed in siliques. Expression is highest in inflorescence and flower tissue.Transmission of mutant alleles to the progeny shows non mendelian segregation- a percentage of mutant alleles revert back to a previous parental (e.g. grandparental) wild type allele. It has been suggested that an RNA template driven or other extra-DNA genomic mechanism may be responsible for the non-mendelian inheritance of HTH. Reversion events in alleles at other loci have also been observed to occur in plants with an hth mutant background indicating a genome wide effect.  go_component extracellular region|GO:0005576|12904212|ISS  go_process cell-cell signaling|GO:0007267|12904212|IMP  go_process embryo sac development|GO:0009553|15634699|IMP  go_process fatty acid omega-oxidation|GO:0010430|16404574|IMP  go_function aldehyde-lyase activity|GO:0016832||ISS  go_function mandelonitrile lyase activity|GO:0046593|12904212|ISS  go_function FAD binding|GO:0050660|12904212|ISS  product HTH (HOTHEAD); FAD binding / aldehyde-lyase/ mandelonitrile lyase  note HOTHEAD (HTH); FUNCTIONS IN: aldehyde-lyase activity, FAD binding, mandelonitrile lyase activity; INVOLVED IN: fatty acid omega-oxidation, embryo sac development, cell-cell signaling; LOCATED IN: extracellular region; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Glucose-methanol-choline oxidoreductase (InterPro:IPR012132), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867); BEST Arabidopsis thaliana protein match is: glucose-methanol-choline (GMC) oxidoreductase family protein (TAIR:AT1G12570.1).  protein_id AT1G72970.2p  transcript_id AT1G72970.2  protein_id AT1G72970.2p  transcript_id AT1G72970.2  
At1g72970	chr1:027452872	0.0	W/27452872-27452944,27453330-27453720,27454129-27454439,27454527-27454912,27454997-27455565,27455652-27455706	AT1G72970.1  CDS  gene_syn ACE, EDA17, F3N23.17, F3N23_17, HOTHEAD, HTH, embryo sac development arrest 17  gene HTH  function Originally identified as a mutation that causes floral organs to fuse together. About 10-20% of mutants also have defects in ovules. Mutants have reduced fertility most likely as because of fusions that pistil emergence. The protein has similarity to the mandelonitrile lyase family of FAD containing oxidoreductases and is predicted to be secreted (SignalP).It is expressed in all tissue layers of roots, inflorescences, stems, leaves, and flowers and is also expressed in siliques. Expression is highest in inflorescence and flower tissue.Transmission of mutant alleles to the progeny shows non mendelian segregation- a percentage of mutant alleles revert back to a previous parental (e.g. grandparental) wild type allele. It has been suggested that an RNA template driven or other extra-DNA genomic mechanism may be responsible for the non-mendelian inheritance of HTH. Reversion events in alleles at other loci have also been observed to occur in plants with an hth mutant background indicating a genome wide effect.  go_component extracellular region|GO:0005576|12904212|ISS  go_process cell-cell signaling|GO:0007267|12904212|IMP  go_process embryo sac development|GO:0009553|15634699|IMP  go_process fatty acid omega-oxidation|GO:0010430|16404574|IMP  go_function aldehyde-lyase activity|GO:0016832||ISS  go_function mandelonitrile lyase activity|GO:0046593|12904212|ISS  go_function FAD binding|GO:0050660|12904212|ISS  product HTH (HOTHEAD); FAD binding / aldehyde-lyase/ mandelonitrile lyase  note HOTHEAD (HTH); FUNCTIONS IN: aldehyde-lyase activity, FAD binding, mandelonitrile lyase activity; INVOLVED IN: fatty acid omega-oxidation, embryo sac development, cell-cell signaling; LOCATED IN: extracellular region; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Glucose-methanol-choline oxidoreductase (InterPro:IPR012132), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867); BEST Arabidopsis thaliana protein match is: glucose-methanol-choline (GMC) oxidoreductase family protein (TAIR:AT1G12570.1); Has 8134 Blast hits to 8058 proteins in 672 species: Archae - 2; Bacteria - 2284; Metazoa - 712; Fungi - 1012; Plants - 128; Viruses - 12; Other Eukaryotes - 3984 (source: NCBI BLink).  protein_id AT1G72970.1p  transcript_id AT1G72970.1  protein_id AT1G72970.1p  transcript_id AT1G72970.1  
At1g72980	chr1:027456227	0.0	C/27456227-27456871	AT1G72980.1  CDS  gene_syn F3N23.18, F3N23_18, LBD7, LOB DOMAIN-CONTAINING PROTEIN 7  gene LBD7  product LBD7 (LOB DOMAIN-CONTAINING PROTEIN 7)  note LBD7 (LOB DOMAIN-CONTAINING PROTEIN 7); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD22 (LOB DOMAIN-CONTAINING PROTEIN 22) (TAIR:AT3G13850.1); Has 524 Blast hits to 522 proteins in 26 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 0; Plants - 493; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT1G72980.1p  transcript_id AT1G72980.1  protein_id AT1G72980.1p  transcript_id AT1G72980.1  
At1g72990	chr1:027461791	0.0	C/27461791-27461867,27461459-27461667,27461255-27461343,27460811-27460891,27460464-27460558,27460095-27460165,27459897-27459987,27459699-27459816,27459519-27459614,27459387-27459435,27459128-27459315,27458923-27458994,27458700-27458852,27458520-27458570,27458163-27458313,27457847-27457992,27457704-27457769,27457480-27457584	AT1G72990.2  CDS  gene_syn BGAL17, F3N23.19, F3N23_19, beta-galactosidase 17  gene BGAL17  go_component beta-galactosidase complex|GO:0009341||IEA  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  go_function cation binding|GO:0043169||IEA  go_function beta-galactosidase activity|GO:0004565||ISS  product BGAL17 (beta-galactosidase 17); beta-galactosidase/ catalytic/ cation binding  note beta-galactosidase 17 (BGAL17); FUNCTIONS IN: cation binding, beta-galactosidase activity, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system, beta-galactosidase complex; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGAL3 (beta-galactosidase 3); beta-galactosidase/ catalytic/ cation binding / sugar binding (TAIR:AT4G36360.2); Has 1163 Blast hits to 1131 proteins in 244 species: Archae - 11; Bacteria - 322; Metazoa - 335; Fungi - 121; Plants - 335; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT1G72990.2p  transcript_id AT1G72990.2  protein_id AT1G72990.2p  transcript_id AT1G72990.2  
At1g72990	chr1:027461998	0.0	C/27461998-27462168,27461791-27461895,27461459-27461654,27461255-27461343,27460811-27460891,27460464-27460558,27460095-27460165,27459897-27459987,27459699-27459816,27459519-27459614,27459387-27459435,27459128-27459315,27458923-27458994,27458700-27458852,27458520-27458570,27458163-27458313,27457847-27457992,27457704-27457769,27457480-27457584	AT1G72990.1  CDS  gene_syn BGAL17, F3N23.19, F3N23_19, beta-galactosidase 17  gene BGAL17  go_component mitochondrion|GO:0005739||IEA  go_component beta-galactosidase complex|GO:0009341||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process lactose catabolic process|GO:0005990||IEA  go_process lactose catabolic process, using glucoside 3-dehydrogenase|GO:0019513||IEA  go_process lactose catabolic process via UDP-galactose|GO:0019515||IEA  go_function catalytic activity|GO:0003824||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  go_function cation binding|GO:0043169||IEA  go_function beta-galactosidase activity|GO:0004565||ISS  product BGAL17 (beta-galactosidase 17); beta-galactosidase/ catalytic/ cation binding  note beta-galactosidase 17 (BGAL17); FUNCTIONS IN: cation binding, beta-galactosidase activity, catalytic activity; INVOLVED IN: lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process; LOCATED IN: mitochondrion, beta-galactosidase complex; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGAL3 (beta-galactosidase 3); beta-galactosidase/ catalytic/ cation binding / sugar binding (TAIR:AT4G36360.2); Has 1170 Blast hits to 1132 proteins in 244 species: Archae - 11; Bacteria - 322; Metazoa - 342; Fungi - 121; Plants - 335; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT1G72990.1p  transcript_id AT1G72990.1  protein_id AT1G72990.1p  transcript_id AT1G72990.1  
At1g73000	chr1:027463092	0.0	W/27463092-27463721	AT1G73000.1  CDS  gene_syn F3N23.20, F3N23_20  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: carpel; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: Bet v I allergen family protein (TAIR:AT2G26040.1); Has 178 Blast hits to 178 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 178; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G73000.1p  transcript_id AT1G73000.1  protein_id AT1G73000.1p  transcript_id AT1G73000.1  
At1g73010	chr1:027466013	0.0	C/27466013-27466180,27465716-27465837,27465361-27465568,27464780-27465169	AT1G73010.1  CDS  gene_syn F3N23.21, F3N23_21  go_process metabolic process|GO:0008152||IEA  go_function phosphatase activity|GO:0016791||IEA  go_component cellular_component|GO:0005575||ND  product phosphatase  note phosphatase; FUNCTIONS IN: phosphatase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate phosphatase, PHOSPHO2 (InterPro:IPR016965), HAD-superfamily hydrolase, subfamily IB, PSPase-like (InterPro:IPR006383), Pyridoxal phosphate phosphatase-related (InterPro:IPR006384); BEST Arabidopsis thaliana protein match is: phosphatase (TAIR:AT1G17710.1); Has 266 Blast hits to 264 proteins in 79 species: Archae - 0; Bacteria - 14; Metazoa - 155; Fungi - 14; Plants - 57; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G73010.1p  transcript_id AT1G73010.1  protein_id AT1G73010.1p  transcript_id AT1G73010.1  
At1g73020	chr1:027473011	0.0	C/27473011-27473181,27472639-27472708,27472441-27472556,27472184-27472310,27471998-27472098,27471827-27471918,27471630-27471734,27471263-27471532,27471035-27471167,27470846-27470959,27470694-27470761,27470473-27470603,27470298-27470380,27470108-27470215,27469714-27470022	AT1G73020.1  CDS  gene_syn F3N23.22, F3N23_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF590 (InterPro:IPR007632); Has 925 Blast hits to 873 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 662; Fungi - 104; Plants - 12; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink).  protein_id AT1G73020.1p  transcript_id AT1G73020.1  protein_id AT1G73020.1p  transcript_id AT1G73020.1  
At1g73030	chr1:027473938	0.0	W/27473938-27474262,27474562-27474848	AT1G73030.1  CDS  gene_syn F3N23.23, F3N23_23, VPS46.2  gene VPS46.2  go_component cellular_component|GO:0005575||ND  go_process vesicle-mediated transport|GO:0016192|16488176|ISS  product VPS46.2  note VPS46.2; INVOLVED IN: vesicle-mediated transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: VPS46.1 (VACUOLAR PROTEIN SORTING 46.1) (TAIR:AT1G17730.1); Has 975 Blast hits to 974 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 421; Fungi - 187; Plants - 221; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).  protein_id AT1G73030.1p  transcript_id AT1G73030.1  protein_id AT1G73030.1p  transcript_id AT1G73030.1  
At1g73040	chr1:027475556	0.0	C/27475556-27475777,27475159-27475467	AT1G73040.1  CDS  gene_syn F3N23.24, F3N23_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product jacalin lectin family protein  note jacalin lectin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin lectin family protein (TAIR:AT1G19715.2); Has 977 Blast hits to 586 proteins in 41 species: Archae - 0; Bacteria - 8; Metazoa - 1; Fungi - 0; Plants - 967; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G73040.1p  transcript_id AT1G73040.1  protein_id AT1G73040.1p  transcript_id AT1G73040.1  
At1g73050	chr1:027478432	0.0	C/27478432-27478534,27476698-27478213,27476565-27476604	AT1G73050.1  CDS  gene_syn F3N23.25, F3N23_25  go_component endomembrane system|GO:0012505||IEA  go_function oxidoreductase activity, acting on CH-OH group of donors|GO:0016614||IEA  go_function FAD binding|GO:0050660||IEA  go_process defense response|GO:0006952|10198113|TAS  go_process cyanide biosynthetic process|GO:0046202|9414550|TAS  product (R)-mandelonitrile lyase, putative / (R)-oxynitrilase, putative  note (R)-mandelonitrile lyase, putative / (R)-oxynitrilase, putative; FUNCTIONS IN: oxidoreductase activity, acting on CH-OH group of donors, FAD binding; INVOLVED IN: cyanide biosynthetic process, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Glucose-methanol-choline oxidoreductase (InterPro:IPR012132), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867); BEST Arabidopsis thaliana protein match is: glucose-methanol-choline (GMC) oxidoreductase family protein (TAIR:AT1G12570.1); Has 8414 Blast hits to 8183 proteins in 676 species: Archae - 2; Bacteria - 2349; Metazoa - 764; Fungi - 1081; Plants - 128; Viruses - 12; Other Eukaryotes - 4078 (source: NCBI BLink).  protein_id AT1G73050.1p  transcript_id AT1G73050.1  protein_id AT1G73050.1p  transcript_id AT1G73050.1  
At1g73060	chr1:027479027	0.0	W/27479027-27479271,27479369-27479399,27479483-27479575,27479661-27479723,27479828-27479939,27480021-27480106,27480238-27480296,27480385-27480487,27480584-27480644,27480850-27480932,27481031-27481111,27481199-27481258	AT1G73060.1  CDS  gene_syn F3N23.26, F3N23_26  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48790.1); Has 45 Blast hits to 45 proteins in 18 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G73060.1p  transcript_id AT1G73060.1  protein_id AT1G73060.1p  transcript_id AT1G73060.1  
At1g73066	chr1:027481785	0.0	W/27481785-27483581	AT1G73066.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_process biological_process|GO:0008150||ND  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, pedicel, carpel, stamen; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: PEPR1 (PEP1 receptor 1); ATP binding / kinase/ protein binding / protein serine/threonine kinase (TAIR:AT1G73080.1); Has 82665 Blast hits to 20941 proteins in 847 species: Archae - 45; Bacteria - 4830; Metazoa - 25905; Fungi - 1073; Plants - 43824; Viruses - 0; Other Eukaryotes - 6988 (source: NCBI BLink).  protein_id AT1G73066.1p  transcript_id AT1G73066.1  protein_id AT1G73066.1p  transcript_id AT1G73066.1  
At1g73080	chr1:027484513	0.0	W/27484513-27487507,27487645-27488021	AT1G73080.1  CDS  gene_syn F3N23.28, F3N23_28, PEP1 receptor 1, PEPR1  gene PEPR1  function Encodes a leucine-rich repeat receptor kinase. Functions as a receptor for AtPep1 to amplify innate immunity response to pathogen attacks.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_process innate immune response|GO:0045087|16785433|TAS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function protein binding|GO:0005515|16785433|IDA  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product PEPR1 (PEP1 receptor 1); ATP binding / kinase/ protein binding / protein serine/threonine kinase  note PEP1 receptor 1 (PEPR1); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation, innate immune response; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT1G17750.1); Has 164031 Blast hits to 98605 proteins in 3215 species: Archae - 99; Bacteria - 12740; Metazoa - 61870; Fungi - 7484; Plants - 59814; Viruses - 362; Other Eukaryotes - 21662 (source: NCBI BLink).  protein_id AT1G73080.1p  transcript_id AT1G73080.1  protein_id AT1G73080.1p  transcript_id AT1G73080.1  
At1g73090	chr1:027488264	0.0	W/27488264-27488381,27488621-27488816,27489204-27489266,27489424-27489560,27489685-27489722,27489808-27489853,27489964-27490128,27490436-27490593	AT1G73090.1  CDS  gene_syn F3N23.29, F3N23_29  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; Has 10 Blast hits to 10 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G73090.1p  transcript_id AT1G73090.1  protein_id AT1G73090.1p  transcript_id AT1G73090.1  
At1g73100	chr1:027491970	0.0	W/27491970-27493979	AT1G73100.1  CDS  gene_syn F3N23.30, F3N23_30, SDG19, SET DOMAIN PROTEIN 19, SU(VAR)3-9 HOMOLOG 3, SUVH3  gene SUVH3  function Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain.  go_component nucleus|GO:0005634||IDA  go_component chromosome|GO:0005694|16928780|IDA  go_process regulation of gene expression, epigenetic|GO:0040029||TAS  go_function histone methyltransferase activity|GO:0042054||ISS  product SUVH3 (SU(VAR)3-9 HOMOLOG 3); histone methyltransferase  note SU(VAR)3-9 HOMOLOG 3 (SUVH3); FUNCTIONS IN: histone methyltransferase activity; INVOLVED IN: regulation of gene expression, epigenetic; LOCATED IN: chromosome, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), SRA-YDG (InterPro:IPR003105), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Pre-SET zinc-binding region (InterPro:IPR007728), Post-SET zinc-binding region (InterPro:IPR003616); BEST Arabidopsis thaliana protein match is: SUVH1 (SU(VAR)3-9 HOMOLOG 1); histone methyltransferase (TAIR:AT5G04940.2); Has 3359 Blast hits to 3223 proteins in 302 species: Archae - 0; Bacteria - 214; Metazoa - 1927; Fungi - 324; Plants - 574; Viruses - 0; Other Eukaryotes - 320 (source: NCBI BLink).  protein_id AT1G73100.1p  transcript_id AT1G73100.1  protein_id AT1G73100.1p  transcript_id AT1G73100.1  
At1g73110	chr1:027496502	0.0	C/27496502-27496844,27496305-27496390,27496139-27496148,27495897-27495959,27495689-27495802,27495498-27495559,27495343-27495397,27495044-27495245,27494843-27494949,27494715-27494770,27494549-27494641,27494344-27494451	AT1G73110.1  CDS  gene_syn F3N23.32, F3N23_32  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_function ATP binding|GO:0005524||IEA  go_function ATPase activity|GO:0016887||ISS  product ribulose bisphosphate carboxylase/oxygenase activase, putative / RuBisCO activase, putative  note ribulose bisphosphate carboxylase/oxygenase activase, putative / RuBisCO activase, putative; FUNCTIONS IN: ATPase activity, ATP binding; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: RCA (RUBISCO ACTIVASE); ADP binding / ATP binding / enzyme regulator/ ribulose-1,5-bisphosphate carboxylase/oxygenase activator (TAIR:AT2G39730.3); Has 346 Blast hits to 346 proteins in 129 species: Archae - 24; Bacteria - 44; Metazoa - 18; Fungi - 42; Plants - 187; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT1G73110.1p  transcript_id AT1G73110.1  protein_id AT1G73110.1p  transcript_id AT1G73110.1  
At1g73120	chr1:027497827	0.0	C/27497827-27497885,27497365-27497635	AT1G73120.1  CDS  gene_syn T18K17.22, T18K17_22  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; EXPRESSED IN: root, cultured cell; Has 17 Blast hits to 17 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G73120.1p  transcript_id AT1G73120.1  protein_id AT1G73120.1p  transcript_id AT1G73120.1  
At1g73130	chr1:027499467	0.0	W/27499467-27499559,27499652-27501086,27501245-27501465,27501705-27501896	AT1G73130.1  CDS  gene_syn T18K17.21, T18K17_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17780.2); Has 1144 Blast hits to 628 proteins in 150 species: Archae - 0; Bacteria - 422; Metazoa - 359; Fungi - 151; Plants - 23; Viruses - 6; Other Eukaryotes - 183 (source: NCBI BLink).  protein_id AT1G73130.1p  transcript_id AT1G73130.1  protein_id AT1G73130.1p  transcript_id AT1G73130.1  
At1g73140	chr1:027503379	0.0	C/27503379-27503743,27503127-27503298,27502828-27503027,27502599-27502745,27502133-27502490	AT1G73140.1  CDS  gene_syn F3N23.34, F3N23_34  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01360.1); Has 716 Blast hits to 705 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 711; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G73140.1p  transcript_id AT1G73140.1  protein_id AT1G73140.1p  transcript_id AT1G73140.1  
At1g73150	chr1:027504797	0.0	C/27504797-27505996,27504654-27504699,27504463-27504555,27504327-27504373	AT1G73150.1  CDS  gene_syn F3N23.35, F3N23_35, GLOBAL TRANSCRIPTION FACTOR GROUP E 3, GTE3  gene GTE3  function Bromodomain and extra terminal domain family protein. Binds to acetyl-histone H3. Binding is reduced when GTE3 is SUMOylated by SIZ1.  go_component chloroplast|GO:0009507||IEA  go_function DNA binding|GO:0003677||ISS  go_function histone binding|GO:0042393|18502747|IPI  product GTE3 (GLOBAL TRANSCRIPTION FACTOR GROUP E 3); DNA binding / histone binding  note GLOBAL TRANSCRIPTION FACTOR GROUP E 3 (GTE3); FUNCTIONS IN: histone binding, DNA binding; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT1G17790.1); Has 4522 Blast hits to 3593 proteins in 186 species: Archae - 0; Bacteria - 4; Metazoa - 3027; Fungi - 609; Plants - 314; Viruses - 0; Other Eukaryotes - 568 (source: NCBI BLink).  protein_id AT1G73150.1p  transcript_id AT1G73150.1  protein_id AT1G73150.1p  transcript_id AT1G73150.1  
At1g73160	chr1:027506534	0.0	W/27506534-27507994	AT1G73160.1  CDS  gene_syn T18K17.18, T18K17_18  go_process biosynthetic process|GO:0009058||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyl transferase family 1 protein  note glycosyl transferase family 1 protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: glycosyl transferase family 1 protein (TAIR:AT4G19460.1); Has 7846 Blast hits to 7839 proteins in 1222 species: Archae - 443; Bacteria - 5577; Metazoa - 73; Fungi - 87; Plants - 81; Viruses - 0; Other Eukaryotes - 1585 (source: NCBI BLink).  protein_id AT1G73160.1p  transcript_id AT1G73160.1  protein_id AT1G73160.1p  transcript_id AT1G73160.1  
At1g73165	chr1:027508725	0.0	C/27508725-27508949	AT1G73165.1  CDS  gene_syn CLAVATA3/ESR-RELATED 1, CLE1  gene CLE1  function Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can replace CLV3 function in vivo.  go_component apoplast|GO:0048046|11457943|RCA  go_process signal transduction|GO:0007165||ISS  go_function receptor binding|GO:0005102||ISS  go_function protein binding|GO:0005515|11457943|ISS  product CLE1 (CLAVATA3/ESR-RELATED 1); protein binding / receptor binding  note CLAVATA3/ESR-RELATED 1 (CLE1); FUNCTIONS IN: protein binding, receptor binding; INVOLVED IN: signal transduction; LOCATED IN: apoplast; Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G73165.1p  transcript_id AT1G73165.1  protein_id AT1G73165.1p  transcript_id AT1G73165.1  
At1g73170	chr1:027514351	0.0	C/27514351-27514395,27514054-27514268,27513812-27513962,27513536-27513727,27512984-27513146,27512608-27512840,27512325-27512501,27512120-27512242,27511722-27512039	AT1G73170.2  CDS  gene_syn T18K17.17, T18K17_17  go_component chloroplast|GO:0009507|18431481|IDA  go_process proteolysis|GO:0006508||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP-dependent peptidase activity|GO:0004176||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  product ATP binding / ATP-dependent peptidase/ nucleoside-triphosphatase/ nucleotide binding / serine-type endopeptidase  note ATP binding / ATP-dependent peptidase/ nucleoside-triphosphatase/ nucleotide binding / serine-type endopeptidase; FUNCTIONS IN: nucleoside-triphosphatase activity, ATP-dependent peptidase activity, nucleotide binding, serine-type endopeptidase activity, ATP binding; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Peptidase S16, Lon protease, C-terminal region (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: sporulation protein-related (TAIR:AT3G10420.2); Has 683 Blast hits to 672 proteins in 271 species: Archae - 13; Bacteria - 427; Metazoa - 43; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).  protein_id AT1G73170.2p  transcript_id AT1G73170.2  protein_id AT1G73170.2p  transcript_id AT1G73170.2  
At1g73170	chr1:027514355	0.0	C/27514355-27514783,27514054-27514268,27513812-27513962,27513536-27513727,27512984-27513146,27512608-27512840,27512325-27512501,27512120-27512242,27511722-27512039	AT1G73170.1  CDS  gene_syn T18K17.17, T18K17_17  go_component chloroplast|GO:0009507|18431481|IDA  go_process proteolysis|GO:0006508||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP-dependent peptidase activity|GO:0004176||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  product ATP binding / ATP-dependent peptidase/ nucleoside-triphosphatase/ nucleotide binding / serine-type endopeptidase  note ATP binding / ATP-dependent peptidase/ nucleoside-triphosphatase/ nucleotide binding / serine-type endopeptidase; FUNCTIONS IN: nucleoside-triphosphatase activity, ATP-dependent peptidase activity, nucleotide binding, serine-type endopeptidase activity, ATP binding; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), Peptidase S16, Lon protease, C-terminal region (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: sporulation protein-related (TAIR:AT3G10420.2); Has 703 Blast hits to 692 proteins in 278 species: Archae - 15; Bacteria - 439; Metazoa - 45; Fungi - 2; Plants - 64; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).  protein_id AT1G73170.1p  transcript_id AT1G73170.1  protein_id AT1G73170.1p  transcript_id AT1G73170.1  
At1g73175	chr1:027515033	0.0	W/27515033-27516568	AT1G73175.1  pseudogenic_transcript  pseudo  gene_syn T18K17.16  function This is described as a LINE; it is present at this location in 83 natural accessions of Arabidopsis, including Col-0, but it is not present in 13 natural accessions including Cvi-0. This locus is normally methylated in wild type Col plants. BONSAI (At1g73177), an adjacent gene, can become hypermethylated in a ddm1 (At5g66750) mutant, and this seems to depends on the presence of the LINE. But, transcript levels of the gene on the other side of the LINE (At1g73170) do not drop in ddm1 mutant plants.  note pseudogene, similar to P0707D10.17, blastp match of 27% identity and 8.3e-30 P-value to GP|13603432|dbj|BAB40159.1||AP002910 P0707D10.17 {Oryza sativa (japonica cultivar-group)}  
At1g73177	chr1:027517277	0.0	C/27517277-27517352,27517141-27517194,27516721-27516782	AT1G73177.1  CDS  gene_syn BNS, BONSAI  gene BNS  function The BONSAI gene encodes a protein with similarity to the APC13 component of the Anaphase Promoting Complex. Plants with lowered level of BONSAI expression, resulting from hypomethylation, RNAi knock-down, or a T-DNA insertion show some abnormalities in shoot and inflorescence development.  go_component anaphase-promoting complex|GO:0005680|17627280|ISS  go_process inflorescence development|GO:0010229|17627280|IMP  go_process phyllome development|GO:0048827|17627280|IMP  go_function molecular_function|GO:0003674||ND  product BNS (BONSAI)  note BONSAI (BNS); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: inflorescence development, phyllome development; LOCATED IN: anaphase-promoting complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 19 Blast hits to 19 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G73177.1p  transcript_id AT1G73177.1  protein_id AT1G73177.1p  transcript_id AT1G73177.1  
At1g73180	chr1:027518335	0.0	W/27518335-27518365,27518448-27518802,27518917-27519103,27519303-27519537,27519607-27519675,27519839-27519940,27520054-27520094,27520198-27520331,27520531-27520594,27520678-27520774,27520875-27520981,27521229-27521251,27521336-27521432	AT1G73180.1  CDS  gene_syn T18K17.15, T18K17_15  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product eukaryotic translation initiation factor-related  note eukaryotic translation initiation factor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Eukaryotic translation initiation factor 2A, central region (InterPro:IPR013979), Translation initiation factor eIF-2A (InterPro:IPR011387), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: TIF3B1 (TRANSLATION INITIATION FACTOR 3B1); nucleic acid binding / translation initiation factor (TAIR:AT5G27640.2); Has 595 Blast hits to 591 proteins in 160 species: Archae - 0; Bacteria - 4; Metazoa - 222; Fungi - 186; Plants - 56; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).  protein_id AT1G73180.1p  transcript_id AT1G73180.1  protein_id AT1G73180.1p  transcript_id AT1G73180.1  
At1g73180	chr1:027518335	0.0	W/27518335-27518365,27518448-27518802,27518917-27519103,27519303-27519537,27519607-27519675,27519839-27519940,27520054-27520094,27520198-27520331,27520531-27520594,27520678-27520774,27520875-27521014	AT1G73180.2  CDS  gene_syn T18K17.15, T18K17_15  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product eukaryotic translation initiation factor-related  note eukaryotic translation initiation factor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Eukaryotic translation initiation factor 2A, central region (InterPro:IPR013979), Translation initiation factor eIF-2A (InterPro:IPR011387), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: TIF3B1 (TRANSLATION INITIATION FACTOR 3B1); nucleic acid binding / translation initiation factor (TAIR:AT5G27640.2); Has 595 Blast hits to 591 proteins in 160 species: Archae - 0; Bacteria - 4; Metazoa - 222; Fungi - 186; Plants - 56; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).  protein_id AT1G73180.2p  transcript_id AT1G73180.2  protein_id AT1G73180.2p  transcript_id AT1G73180.2  
At1g73190	chr1:027522155	0.0	W/27522155-27522296,27522388-27522653,27522773-27523171	AT1G73190.1  CDS  gene_syn ALPHA-TIP, ALPHA-TONOPLAST INTRINSIC PROTEIN, T18K17.14, T18K17_14, TIP3;1  gene TIP3;1  function Moves to the Protein Storage Vacuole in a Golgi independent manner  go_component protein storage vacuole|GO:0000326||IDA  go_component plant-type vacuole membrane|GO:0009705|16227454|IDA  go_component plant-type vacuole membrane|GO:0009705||IDA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_process autophagy|GO:0006914|12941871|TAS  go_function water channel activity|GO:0015250||ISS  product TIP3;1; water channel  note TIP3;1; FUNCTIONS IN: water channel activity; INVOLVED IN: autophagy, transport; LOCATED IN: plant-type vacuole membrane, protein storage vacuole, membrane; EXPRESSED IN: flower, root, leaf, seed; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN); water channel (TAIR:AT1G17810.1); Has 6615 Blast hits to 6600 proteins in 1241 species: Archae - 57; Bacteria - 2489; Metazoa - 1293; Fungi - 266; Plants - 1468; Viruses - 0; Other Eukaryotes - 1042 (source: NCBI BLink).  protein_id AT1G73190.1p  transcript_id AT1G73190.1  protein_id AT1G73190.1p  transcript_id AT1G73190.1  
At1g73200	chr1:027526370	0.0	C/27526370-27526573,27525911-27526149,27525175-27525820,27524722-27525088,27524505-27524599,27524122-27524316,27523454-27524047	AT1G73200.1  CDS  gene_syn T18K17.13, T18K17_13  go_component vacuole|GO:0005773|15539469|IDA  go_process signal transduction|GO:0007165|15358268|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product phosphoinositide binding  note phosphoinositide binding; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: phosphoinositide binding (TAIR:AT1G17820.1); Has 311 Blast hits to 237 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 151; Plants - 32; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G73200.1p  transcript_id AT1G73200.1  protein_id AT1G73200.1p  transcript_id AT1G73200.1  
At1g73210	chr1:027530358	0.0	C/27530358-27530453,27529450-27529628,27529110-27529344,27528939-27529024,27528760-27528851,27528428-27528678	AT1G73210.2  CDS  gene_syn T18K17.12, T18K17_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17830.1); Has 148 Blast hits to 147 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 146; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G73210.2p  transcript_id AT1G73210.2  protein_id AT1G73210.2p  transcript_id AT1G73210.2  
At1g73210	chr1:027530358	0.0	C/27530358-27530453,27529450-27529634,27529110-27529344,27528939-27529024,27528760-27528851,27528428-27528678	AT1G73210.1  CDS  gene_syn T18K17.12, T18K17_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17830.1); Has 148 Blast hits to 147 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 146; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G73210.1p  transcript_id AT1G73210.1  protein_id AT1G73210.1p  transcript_id AT1G73210.1  
At1g73220	chr1:027538387	0.0	W/27538387-27538834,27538938-27540109	AT1G73220.1  CDS  gene_syn Arabidopsis thaliana ORGANIC CATION/CARNITINE TRANSPORTER1, AtOCT1, T18K17.11, T18K17_11  gene AtOCT1  go_component plasma membrane|GO:0005886|17521409|IDA  go_component membrane|GO:0016020|11152613|ISS  go_function transporter activity|GO:0005215||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  go_function carnitine transporter activity|GO:0015226|17521409|IDA  product AtOCT1 (Arabidopsis thaliana ORGANIC CATION/CARNITINE TRANSPORTER1); carbohydrate transmembrane transporter/ carnitine transporter/ transporter  note Arabidopsis thaliana ORGANIC CATION/CARNITINE TRANSPORTER1 (AtOCT1); FUNCTIONS IN: carnitine transporter activity, transporter activity, carbohydrate transmembrane transporter activity; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ATOCT2 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 2); carbohydrate transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT1G79360.1); Has 11060 Blast hits to 11020 proteins in 916 species: Archae - 169; Bacteria - 4222; Metazoa - 4042; Fungi - 1523; Plants - 645; Viruses - 0; Other Eukaryotes - 459 (source: NCBI BLink).  protein_id AT1G73220.1p  transcript_id AT1G73220.1  protein_id AT1G73220.1p  transcript_id AT1G73220.1  
At1g73230	chr1:027541297	0.0	C/27541297-27541364,27541062-27541210,27540906-27540962,27540783-27540821,27540506-27540690	AT1G73230.1  CDS  gene_syn T18K17.10, T18K17_10  go_process response to salt stress|GO:0009651|17916636|IEP  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product nascent polypeptide-associated complex (NAC) domain-containing protein  note nascent polypeptide-associated complex (NAC) domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nascent polypeptide-associated complex NAC (InterPro:IPR002715); BEST Arabidopsis thaliana protein match is: nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative (TAIR:AT1G17880.1); Has 618 Blast hits to 618 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 331; Fungi - 126; Plants - 89; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT1G73230.1p  transcript_id AT1G73230.1  protein_id AT1G73230.1p  transcript_id AT1G73230.1  
At1g73240	chr1:027544177	0.0	C/27544177-27544668,27543867-27544091,27542958-27543335,27542397-27542861	AT1G73240.1  CDS  gene_syn T18K17.9, T18K17_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 22 Blast hits to 22 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G73240.1p  transcript_id AT1G73240.1  protein_id AT1G73240.1p  transcript_id AT1G73240.1  
At1g73250	chr1:027546339	0.0	C/27546339-27546360,27545213-27546162	AT1G73250.1  CDS  gene_syn ACTIVATING TRANSCRIPTION FACTOR 5, ATFX, GDP-4-KETO-6-DEOXY-D-MANNOSE-3,5-EPIMERASE-4-REDUCTASE, GDP-4-KETO-6-DEOXYMANNOSE-3,5-EPIMERASE-4-REDUCTASE 1, GER1, T18K17.8, T18K17_8  gene GER1  function encodes a bifunctional 3, 5-epimerase-4-reductase in L-fucose synthesis and converts GDP-D-mannose to GDP-L-fucose in vitro along with MUR1 (GDP-D-mannose 4,6-dehydratase). It is expressed in all tissues examined, but most abundantly in roots and flowers.  go_component cellular_component|GO:0005575||ND  go_process L-fucose biosynthetic process|GO:0006005|10758496|IDA  go_process L-ascorbic acid biosynthetic process|GO:0019853|10758496|IMP  go_function GDP-L-fucose synthase activity|GO:0050577|10758496|IDA  product GER1 (GDP-4-KETO-6-DEOXYMANNOSE-3,5-EPIMERASE-4-REDUCTASE 1); GDP-L-fucose synthase  note GDP-4-KETO-6-DEOXYMANNOSE-3,5-EPIMERASE-4-REDUCTASE 1 (GER1); FUNCTIONS IN: GDP-L-fucose synthase activity; INVOLVED IN: L-ascorbic acid biosynthetic process, L-fucose biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: GER2; binding / catalytic/ coenzyme binding (TAIR:AT1G17890.1); Has 18729 Blast hits to 18728 proteins in 1563 species: Archae - 385; Bacteria - 8611; Metazoa - 399; Fungi - 148; Plants - 452; Viruses - 22; Other Eukaryotes - 8712 (source: NCBI BLink).  protein_id AT1G73250.1p  transcript_id AT1G73250.1  protein_id AT1G73250.1p  transcript_id AT1G73250.1  
At1g73260	chr1:027547410	0.0	C/27547410-27548057	AT1G73260.1  CDS  gene_syn T18K17.7, T18K17_7  go_process response to salt stress|GO:0009651|17916636|IEP  go_function endopeptidase inhibitor activity|GO:0004866||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function endopeptidase inhibitor activity|GO:0004866||ISS  product trypsin and protease inhibitor family protein / Kunitz family protein  note trypsin and protease inhibitor family protein / Kunitz family protein; FUNCTIONS IN: endopeptidase inhibitor activity; INVOLVED IN: response to salt stress; LOCATED IN: mitochondrion; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I3, Kunitz legume (InterPro:IPR002160), Kunitz inhibitor ST1-like (InterPro:IPR011065); BEST Arabidopsis thaliana protein match is: trypsin and protease inhibitor family protein / Kunitz family protein (TAIR:AT1G17860.1); Has 429 Blast hits to 429 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 428; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G73260.1p  transcript_id AT1G73260.1  protein_id AT1G73260.1p  transcript_id AT1G73260.1  
At1g73270	chr1:027552369	0.0	C/27552369-27552517,27552131-27552276,27551974-27552050,27551764-27551886,27551580-27551682,27551457-27551494,27550812-27550913,27550632-27550718,27550466-27550534,27550320-27550391,27549919-27550037,27549718-27549831,27549579-27549624,27549410-27549486,27549021-27549057	AT1G73270.1  CDS  gene_syn T18K17.6, T18K17_6, scpl6, serine carboxypeptidase-like 6  gene scpl6  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl6 (serine carboxypeptidase-like 6); serine-type carboxypeptidase  note serine carboxypeptidase-like 6 (scpl6); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: scpl2 (serine carboxypeptidase-like 2); serine-type carboxypeptidase (TAIR:AT1G73300.1); Has 2769 Blast hits to 2704 proteins in 343 species: Archae - 0; Bacteria - 347; Metazoa - 567; Fungi - 548; Plants - 989; Viruses - 0; Other Eukaryotes - 318 (source: NCBI BLink).  protein_id AT1G73270.1p  transcript_id AT1G73270.1  protein_id AT1G73270.1p  transcript_id AT1G73270.1  
At1g73280	chr1:027555174	0.0	C/27555174-27555322,27554931-27555076,27554773-27554849,27554586-27554708,27554397-27554499,27554142-27554281,27553978-27554064,27553819-27553887,27553667-27553738,27553458-27553576,27553267-27553380,27553142-27553187,27552970-27553050	AT1G73280.1  CDS  gene_syn T18K17.5, T18K17_5, scpl3, serine carboxypeptidase-like 3  gene scpl3  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl3 (serine carboxypeptidase-like 3); serine-type carboxypeptidase  note serine carboxypeptidase-like 3 (scpl3); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl2 (serine carboxypeptidase-like 2); serine-type carboxypeptidase (TAIR:AT1G73300.1); Has 2793 Blast hits to 2712 proteins in 342 species: Archae - 0; Bacteria - 344; Metazoa - 587; Fungi - 552; Plants - 987; Viruses - 0; Other Eukaryotes - 323 (source: NCBI BLink).  protein_id AT1G73280.1p  transcript_id AT1G73280.1  protein_id AT1G73280.1p  transcript_id AT1G73280.1  
At1g73290	chr1:027558625	0.0	C/27558625-27558770,27558395-27558540,27558237-27558313,27558032-27558154,27557825-27557927,27557616-27557755,27557451-27557531,27557277-27557345,27557109-27557180,27556919-27557037,27556717-27556830,27556561-27556610,27556397-27556473	AT1G73290.1  CDS  gene_syn T18K17.4, T18K17_4, scpl5, serine carboxypeptidase-like 5  gene scpl5  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl5 (serine carboxypeptidase-like 5); serine-type carboxypeptidase  note serine carboxypeptidase-like 5 (scpl5); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: scpl2 (serine carboxypeptidase-like 2); serine-type carboxypeptidase (TAIR:AT1G73300.1); Has 2910 Blast hits to 2825 proteins in 359 species: Archae - 0; Bacteria - 439; Metazoa - 577; Fungi - 552; Plants - 996; Viruses - 0; Other Eukaryotes - 346 (source: NCBI BLink).  protein_id AT1G73290.1p  transcript_id AT1G73290.1  protein_id AT1G73290.1p  transcript_id AT1G73290.1  
At1g73300	chr1:027561900	0.0	C/27561900-27562048,27561663-27561808,27561478-27561554,27561270-27561392,27561078-27561180,27560854-27560993,27560684-27560770,27560517-27560585,27560358-27560429,27560160-27560278,27559975-27560088,27559848-27559893,27559673-27559753	AT1G73300.1  CDS  gene_syn T18K17.3, T18K17_3, scpl2, serine carboxypeptidase-like 2  gene scpl2  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl2 (serine carboxypeptidase-like 2); serine-type carboxypeptidase  note serine carboxypeptidase-like 2 (scpl2); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl1 (serine carboxypeptidase-like 1); serine-type carboxypeptidase (TAIR:AT5G36180.1); Has 2863 Blast hits to 2779 proteins in 358 species: Archae - 0; Bacteria - 392; Metazoa - 587; Fungi - 550; Plants - 988; Viruses - 0; Other Eukaryotes - 346 (source: NCBI BLink).  protein_id AT1G73300.1p  transcript_id AT1G73300.1  protein_id AT1G73300.1p  transcript_id AT1G73300.1  
At1g73310	chr1:027565029	0.0	C/27565029-27565177,27564792-27564937,27564633-27564709,27564434-27564556,27564248-27564350,27564022-27564161,27563859-27563945,27563693-27563761,27563540-27563611,27563352-27563470,27563153-27563266,27563012-27563057,27562815-27562895	AT1G73310.1  CDS  gene_syn T18K17.2, T18K17_2, scpl4, serine carboxypeptidase-like 4  gene scpl4  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl4 (serine carboxypeptidase-like 4); serine-type carboxypeptidase  note serine carboxypeptidase-like 4 (scpl4); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl2 (serine carboxypeptidase-like 2); serine-type carboxypeptidase (TAIR:AT1G73300.1); Has 2798 Blast hits to 2713 proteins in 340 species: Archae - 0; Bacteria - 351; Metazoa - 582; Fungi - 550; Plants - 996; Viruses - 0; Other Eukaryotes - 319 (source: NCBI BLink).  protein_id AT1G73310.1p  transcript_id AT1G73310.1  protein_id AT1G73310.1p  transcript_id AT1G73310.1  
At1g73320	chr1:027566871	0.0	C/27566871-27567206,27566444-27566586,27566101-27566365	AT1G73320.2  CDS  gene_syn T9L24.46, T9L24_46  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Expressed protein (TAIR:AT1G08125.1); Has 568 Blast hits to 568 proteins in 112 species: Archae - 0; Bacteria - 5; Metazoa - 278; Fungi - 134; Plants - 99; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT1G73320.2p  transcript_id AT1G73320.2  protein_id AT1G73320.2p  transcript_id AT1G73320.2  
At1g73320	chr1:027566871	0.0	C/27566871-27567206,27566444-27566586,27566181-27566365,27565987-27566100,27565728-27565900	AT1G73320.1  CDS  gene_syn T9L24.46, T9L24_46  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Expressed protein (TAIR:AT1G08125.1); Has 1043 Blast hits to 1041 proteins in 162 species: Archae - 0; Bacteria - 35; Metazoa - 424; Fungi - 344; Plants - 150; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT1G73320.1p  transcript_id AT1G73320.1  protein_id AT1G73320.1p  transcript_id AT1G73320.1  
At1g73325	chr1:027567518	0.0	C/27567518-27568186	AT1G73325.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function endopeptidase inhibitor activity|GO:0004866||IEA  go_process biological_process|GO:0008150||ND  go_function endopeptidase inhibitor activity|GO:0004866||ISS  product trypsin and protease inhibitor family protein / Kunitz family protein  note trypsin and protease inhibitor family protein / Kunitz family protein; FUNCTIONS IN: endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I3, Kunitz legume (InterPro:IPR002160), Kunitz inhibitor ST1-like (InterPro:IPR011065); BEST Arabidopsis thaliana protein match is: ATDR4; peptidase inhibitor (TAIR:AT1G73330.1); Has 507 Blast hits to 507 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 506; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G73325.1p  transcript_id AT1G73325.1  protein_id AT1G73325.1p  transcript_id AT1G73325.1  
At1g73330	chr1:027569022	0.0	C/27569022-27569651	AT1G73330.1  CDS  gene_syn ATDR4, T9L24.45, T9L24_45  gene ATDR4  function encodes a plant-specific protease inhibitor-like protein whose transcript level in root disappears in response to progressive drought stress. The decrease in transcript level is independent from abscisic acid level.  go_component endomembrane system|GO:0012505||IEA  go_process response to water deprivation|GO:0009414|7823904|IEP  go_process response to abscisic acid stimulus|GO:0009737|7823904|IEP  go_function peptidase inhibitor activity|GO:0030414|7823904|ISS  product ATDR4; peptidase inhibitor  note ATDR4; FUNCTIONS IN: peptidase inhibitor activity; INVOLVED IN: response to water deprivation, response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I3, Kunitz legume (InterPro:IPR002160), Kunitz inhibitor ST1-like (InterPro:IPR011065); BEST Arabidopsis thaliana protein match is: trypsin and protease inhibitor family protein / Kunitz family protein (TAIR:AT1G73325.1); Has 400 Blast hits to 400 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 399; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G73330.1p  transcript_id AT1G73330.1  protein_id AT1G73330.1p  transcript_id AT1G73330.1  
At1g73340	chr1:027573136	0.0	W/27573136-27573368,27573444-27573768,27573855-27574004,27574086-27574331,27574422-27574493,27574582-27574660,27574746-27574867,27574952-27575079,27575165-27575273	AT1G73340.1  CDS  gene_syn T9L24.44, T9L24_44  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group IV (InterPro:IPR002403), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: DWF4 (DWARF 4); steroid 22-alpha hydroxylase (TAIR:AT3G50660.1); Has 21673 Blast hits to 21619 proteins in 1178 species: Archae - 49; Bacteria - 2632; Metazoa - 9692; Fungi - 3451; Plants - 4758; Viruses - 3; Other Eukaryotes - 1088 (source: NCBI BLink).  protein_id AT1G73340.1p  transcript_id AT1G73340.1  protein_id AT1G73340.1p  transcript_id AT1G73340.1  
At1g73350	chr1:027576431	0.0	C/27576431-27576479,27576239-27576345,27576053-27576135,27575683-27575962	AT1G73350.3  CDS  gene_syn T9L24.52, T9L24_52  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 26 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 2; Plants - 19; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G73350.3p  transcript_id AT1G73350.3  protein_id AT1G73350.3p  transcript_id AT1G73350.3  
At1g73350	chr1:027577078	0.0	C/27577078-27577126,27576901-27576965,27576431-27576479,27576239-27576339,27576053-27576135,27575683-27575962	AT1G73350.1  CDS  gene_syn T9L24.52, T9L24_52  go_component nucleus|GO:0005634|14617066|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 29 Blast hits to 29 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 3; Plants - 19; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G73350.1p  transcript_id AT1G73350.1  protein_id AT1G73350.1p  transcript_id AT1G73350.1  
At1g73350	chr1:027577078	0.0	C/27577078-27577126,27576901-27576965,27576431-27576479,27576239-27576345,27576053-27576135,27575683-27575962	AT1G73350.2  CDS  gene_syn T9L24.52, T9L24_52  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 34 Blast hits to 34 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 4; Plants - 19; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G73350.2p  transcript_id AT1G73350.2  protein_id AT1G73350.2p  transcript_id AT1G73350.2  
At1g73360	chr1:027581675	0.0	C/27581675-27581820,27581481-27581598,27581190-27581378,27580621-27581103,27580432-27580533,27580139-27580339,27579882-27580062,27579545-27579804,27579369-27579458,27578893-27579291	AT1G73360.1  CDS  gene_syn ATHDG11, EDT1, ENHANCED DROUGHT TOLERANCE 1, HDG11, HOMEODOMAIN GLABROUS 11, T9L24.43, T9L24_43  gene HDG11  function Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. It is involved in trichome branching.  go_component nucleus|GO:0005634|18451323|IDA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process trichome branching|GO:0010091|16778018|IGI  go_process trichome branching|GO:0010091|16778018|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|18451323|IDA  product HDG11 (HOMEODOMAIN GLABROUS 11); DNA binding / transcription factor  note HOMEODOMAIN GLABROUS 11 (HDG11); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: trichome branching, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: HDG12 (HOMEODOMAIN GLABROUS 12); transcription factor (TAIR:AT1G17920.1); Has 9840 Blast hits to 9748 proteins in 450 species: Archae - 0; Bacteria - 0; Metazoa - 7854; Fungi - 222; Plants - 1618; Viruses - 8; Other Eukaryotes - 138 (source: NCBI BLink).  protein_id AT1G73360.1p  transcript_id AT1G73360.1  protein_id AT1G73360.1p  transcript_id AT1G73360.1  
At1g73370	chr1:027588220	0.0	C/27588220-27588326,27587981-27588113,27587724-27587878,27587442-27587634,27587237-27587355,27586948-27587164,27586582-27586851,27586205-27586488,27585893-27586117,27585252-27585818,27585029-27585167,27584533-27584952	AT1G73370.1  CDS  gene_syn ATSUS6, SUCROSE SYNTHASE 6, SUS6, T9L24.42, T9L24_42  gene SUS6  function Encodes a protein with sucrose synthase activity (SUS6).  go_process sucrose metabolic process|GO:0005985||IEA  go_process biosynthetic process|GO:0009058||IEA  go_component cellular_component|GO:0005575||ND  go_process sucrose biosynthetic process|GO:0005986||ISS  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function sucrose synthase activity|GO:0016157|17257168|IDA  go_function sucrose synthase activity|GO:0016157||ISS  product SUS6 (SUCROSE SYNTHASE 6); UDP-glycosyltransferase/ sucrose synthase  note SUCROSE SYNTHASE 6 (SUS6); FUNCTIONS IN: UDP-glycosyltransferase activity, sucrose synthase activity; INVOLVED IN: sucrose biosynthetic process, biosynthetic process, sucrose metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sucrose synthase, plants and cyanobacteria (InterPro:IPR012820), Sucrose synthase (InterPro:IPR000368), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: SUS5; UDP-glycosyltransferase/ sucrose synthase (TAIR:AT5G37180.1); Has 6054 Blast hits to 6048 proteins in 990 species: Archae - 229; Bacteria - 3053; Metazoa - 88; Fungi - 78; Plants - 480; Viruses - 0; Other Eukaryotes - 2126 (source: NCBI BLink).  protein_id AT1G73370.1p  transcript_id AT1G73370.1  protein_id AT1G73370.1p  transcript_id AT1G73370.1  
At1g73380	chr1:027589100	0.0	W/27589100-27589281,27589362-27590109,27590187-27590353,27590450-27590657	AT1G73380.1  CDS  gene_syn T9L24.41, T9L24_41  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1308 (InterPro:IPR010733); Has 120 Blast hits to 118 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 101; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G73380.1p  transcript_id AT1G73380.1  protein_id AT1G73380.1p  transcript_id AT1G73380.1  
At1g73380	chr1:027589100	0.0	W/27589100-27589281,27589362-27590109,27590187-27590353,27590450-27590657	AT1G73380.2  CDS  gene_syn T9L24.41, T9L24_41  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1308 (InterPro:IPR010733); Has 120 Blast hits to 118 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 101; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G73380.2p  transcript_id AT1G73380.2  protein_id AT1G73380.2p  transcript_id AT1G73380.2  
At1g73390	chr1:027593902	0.0	C/27593902-27594148,27593745-27593819,27593605-27593663,27593350-27593485,27592857-27592953,27592690-27592756,27592400-27592498,27591782-27591871,27591486-27591644	AT1G73390.4  CDS  gene_syn T9L24.40, T9L24_40  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17940.1); Has 72 Blast hits to 72 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 19; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G73390.4p  transcript_id AT1G73390.4  protein_id AT1G73390.4p  transcript_id AT1G73390.4  
At1g73390	chr1:027593902	0.0	C/27593902-27594148,27593745-27593819,27593605-27593663,27593350-27593485,27592857-27592953,27592690-27592756,27592400-27592498,27591782-27591871,27591490-27591644,27591302-27591403,27591079-27591211	AT1G73390.1  CDS  gene_syn T9L24.40, T9L24_40  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRO1 (InterPro:IPR004328); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17940.1); Has 95 Blast hits to 95 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 23; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G73390.1p  transcript_id AT1G73390.1  protein_id AT1G73390.1p  transcript_id AT1G73390.1  
At1g73390	chr1:027593902	0.0	C/27593902-27594148,27593745-27593819,27593605-27593663,27593350-27593485,27592857-27592953,27592690-27592756,27592400-27592498,27591782-27591871,27591490-27591644,27591302-27591403,27591079-27591211	AT1G73390.2  CDS  gene_syn T9L24.40, T9L24_40  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRO1 (InterPro:IPR004328); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17940.1); Has 95 Blast hits to 95 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 23; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G73390.2p  transcript_id AT1G73390.2  protein_id AT1G73390.2p  transcript_id AT1G73390.2  
At1g73390	chr1:027593902	0.0	C/27593902-27594148,27593745-27593819,27593605-27593663,27593350-27593485,27592857-27592953,27592690-27592756,27592400-27592498,27591782-27591871,27591490-27591644,27591302-27591403,27591079-27591211	AT1G73390.3  CDS  gene_syn T9L24.40, T9L24_40  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRO1 (InterPro:IPR004328); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17940.1); Has 95 Blast hits to 95 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 23; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G73390.3p  transcript_id AT1G73390.3  protein_id AT1G73390.3p  transcript_id AT1G73390.3  
At1g73400	chr1:027598412	0.0	W/27598412-27599812	AT1G73400.1  CDS  gene_syn T9L24.39, T9L24_39  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: F mature embryo stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G62470.1); Has 14517 Blast hits to 4704 proteins in 153 species: Archae - 4; Bacteria - 4; Metazoa - 155; Fungi - 160; Plants - 13729; Viruses - 0; Other Eukaryotes - 465 (source: NCBI BLink).  protein_id AT1G73400.1p  transcript_id AT1G73400.1  protein_id AT1G73400.1p  transcript_id AT1G73400.1  
At1g73410	chr1:027601852	0.0	W/27601852-27601972,27602084-27602515,27602860-27603038	AT1G73410.1  CDS  gene_syn ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 54, ATMYB54, BW54, MYB DOMAIN PROTEIN 54, MYB54, T9L24.38, T9L24_38  gene MYB54  function Encodes a putative transcription factor that is a member of the R2R3-MYB family.  go_component nucleus|GO:0005634|18952777|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_function DNA binding|GO:0003677|9839469|ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9839469|ISS  product MYB54 (MYB DOMAIN PROTEIN 54); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 54 (MYB54); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of secondary cell wall thickening; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB52 (MYB DOMAIN PROTEIN 52); DNA binding / transcription factor (TAIR:AT1G17950.1); Has 6295 Blast hits to 5639 proteins in 370 species: Archae - 0; Bacteria - 0; Metazoa - 721; Fungi - 385; Plants - 3426; Viruses - 5; Other Eukaryotes - 1758 (source: NCBI BLink).  protein_id AT1G73410.1p  transcript_id AT1G73410.1  protein_id AT1G73410.1p  transcript_id AT1G73410.1  
At1g73430	chr1:027604096	0.0	W/27604096-27604182,27604292-27604375,27604463-27604570,27604724-27604768,27604866-27604940,27605041-27605136,27605350-27605427,27605664-27605749,27605887-27605953,27606130-27606192,27606379-27606480,27606649-27606753,27606843-27606935,27607227-27607315,27607673-27607892,27608195-27608284,27608358-27608474,27608572-27608604,27608807-27608893,27608968-27609030,27609206-27609322,27609595-27609687,27609937-27610062,27610432-27610532,27610700-27610829	AT1G73430.1  CDS  gene_syn T9L24.37, T9L24_37  go_component cis-Golgi network|GO:0005801||IEA  go_component chloroplast|GO:0009507||IEA  go_component membrane|GO:0016020||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function molecular_function|GO:0003674||ND  product sec34-like family protein  note sec34-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: chloroplast, membrane, cis-Golgi network; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec34-like protein (InterPro:IPR007265); Has 256 Blast hits to 248 proteins in 121 species: Archae - 0; Bacteria - 4; Metazoa - 107; Fungi - 89; Plants - 19; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT1G73430.1p  transcript_id AT1G73430.1  protein_id AT1G73430.1p  transcript_id AT1G73430.1  
At1g73430	chr1:027604096	0.0	W/27604096-27604182,27604292-27604375,27604463-27604570,27604724-27604768,27604866-27604940,27605041-27605136,27605350-27605427,27605664-27605749,27605887-27605953,27606130-27606192,27606379-27606480,27606649-27606753,27606843-27606935,27607227-27607315,27607673-27607892,27608195-27608284,27608358-27608474,27608572-27608604,27608807-27608893,27608968-27609030,27609206-27609322,27609595-27609687,27609937-27610062,27610432-27610532,27610700-27610829	AT1G73430.2  CDS  gene_syn T9L24.37, T9L24_37  go_component cis-Golgi network|GO:0005801||IEA  go_component chloroplast|GO:0009507||IEA  go_component membrane|GO:0016020||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function molecular_function|GO:0003674||ND  product sec34-like family protein  note sec34-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: chloroplast, cis-Golgi network, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec34-like protein (InterPro:IPR007265); Has 256 Blast hits to 248 proteins in 121 species: Archae - 0; Bacteria - 4; Metazoa - 107; Fungi - 89; Plants - 19; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT1G73430.2p  transcript_id AT1G73430.2  protein_id AT1G73430.2p  transcript_id AT1G73430.2  
At1g73440	chr1:027611418	0.0	W/27611418-27612182	AT1G73440.1  CDS  go_component chloroplast|GO:0009507||IEA  go_function calcium ion binding|GO:0005509||IEA  go_process biological_process|GO:0008150||ND  product calmodulin-related  note calmodulin-related; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248), Ubiquitin interacting motif (InterPro:IPR003903); BEST Arabidopsis thaliana protein match is: EDA34 (embryo sac development arrest 34) (TAIR:AT4G00140.1); Has 1666 Blast hits to 1650 proteins in 282 species: Archae - 0; Bacteria - 3; Metazoa - 517; Fungi - 137; Plants - 551; Viruses - 0; Other Eukaryotes - 458 (source: NCBI BLink).  protein_id AT1G73440.1p  transcript_id AT1G73440.1  protein_id AT1G73440.1p  transcript_id AT1G73440.1  
At1g73445	chr1:027612616	0.0	C/27612616-27613350	AT1G73445.1  mRNA_TE_gene  pseudo  gene_syn T9L24.50  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 7.1e-06 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)  
At1g73450	chr1:027613856	0.0	W/27613856-27615002,27615229-27616540,27616913-27617192,27617377-27617484,27617567-27617845,27618179-27618322,27618447-27618635	AT1G73450.1  CDS  gene_syn T9L24.36, T9L24_36  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G73460.1); Has 68036 Blast hits to 66512 proteins in 1891 species: Archae - 44; Bacteria - 5577; Metazoa - 29490; Fungi - 7881; Plants - 9741; Viruses - 352; Other Eukaryotes - 14951 (source: NCBI BLink).  protein_id AT1G73450.1p  transcript_id AT1G73450.1  protein_id AT1G73450.1p  transcript_id AT1G73450.1  
At1g73460	chr1:027620122	0.0	W/27620122-27621271,27621691-27623050,27623339-27623618,27623875-27623982,27624063-27624341,27624443-27624586,27624711-27624899	AT1G73460.1  CDS  gene_syn T9L24.35, T9L24_35  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cytoplasm|GO:0005737|15469496|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol, plasma membrane, cytoplasm; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT1G73450.1); Has 69100 Blast hits to 67050 proteins in 1937 species: Archae - 48; Bacteria - 6260; Metazoa - 29676; Fungi - 8001; Plants - 9737; Viruses - 356; Other Eukaryotes - 15022 (source: NCBI BLink).  protein_id AT1G73460.1p  transcript_id AT1G73460.1  protein_id AT1G73460.1p  transcript_id AT1G73460.1  
At1g73470	chr1:027625208	0.0	W/27625208-27625294,27625407-27625485,27625582-27625669,27625798-27625947,27626193-27626324,27626421-27626571,27626657-27626695,27626781-27626855,27627008-27627067,27627198-27627262,27627380-27627470,27627566-27627604	AT1G73470.1  CDS  gene_syn T9L24.34, T9L24_34  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 53 Blast hits to 53 proteins in 26 species: Archae - 0; Bacteria - 42; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G73470.1p  transcript_id AT1G73470.1  protein_id AT1G73470.1p  transcript_id AT1G73470.1  
At1g73470	chr1:027625853	0.0	W/27625853-27625947,27626193-27626324,27626421-27626571,27626657-27626695,27626781-27626855,27627008-27627067,27627198-27627262,27627380-27627470,27627566-27627604	AT1G73470.2  CDS  gene_syn T9L24.34, T9L24_34  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 53 Blast hits to 53 proteins in 26 species: Archae - 0; Bacteria - 42; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G73470.2p  transcript_id AT1G73470.2  protein_id AT1G73470.2p  transcript_id AT1G73470.2  
At1g73480	chr1:027629266	0.0	W/27629266-27629897,27630733-27630771,27630865-27630935,27631572-27631636,27631721-27631810,27631899-27631991,27632085-27632486	AT1G73480.1  CDS  gene_syn T9L24.33, T9L24_33  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT1G18360.1); Has 3768 Blast hits to 3754 proteins in 932 species: Archae - 19; Bacteria - 2393; Metazoa - 125; Fungi - 106; Plants - 246; Viruses - 60; Other Eukaryotes - 819 (source: NCBI BLink).  protein_id AT1G73480.1p  transcript_id AT1G73480.1  protein_id AT1G73480.1p  transcript_id AT1G73480.1  
At1g73490	chr1:027634829	0.0	C/27634829-27634867,27634694-27634742,27634522-27634598,27634185-27634289,27633665-27634092,27633496-27633577	AT1G73490.1  CDS  gene_syn T9L24.49, T9L24_49  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: ATNUC-L1; nucleic acid binding / nucleotide binding (TAIR:AT1G48920.1); Has 51 Blast hits to 47 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G73490.1p  transcript_id AT1G73490.1  protein_id AT1G73490.1p  transcript_id AT1G73490.1  
At1g73500	chr1:027639419	0.0	C/27639419-27640351	AT1G73500.1  CDS  gene_syn ATMKK9, MAP KINASE KINASE 9, MKK9, T9L24.32, T9L24_32  gene MKK9  function member of MAP Kinase Kinase family. Autophosphorylates and also phosphorylates MPK3 and MPK6. Independently involved in ethylene and calmalexin biosynthesis. Induces transcription of ACS2, ACS6, ERF1, ERF2, ERF5, ERF6, CYP79B2, CYP79B3, CYP71A13 and PAD3.  go_component mitochondrion|GO:0005739||IEA  go_process response to wounding|GO:0009611|17953483|IEP  go_process response to salt stress|GO:0009651|18693252|IMP  go_process ethylene biosynthetic process|GO:0009693|18693252|IDA  go_process camalexin biosynthetic process|GO:0010120|18693252|IDA  go_process positive regulation of transcription|GO:0045941|18693252|IEP  go_process protein amino acid autophosphorylation|GO:0046777|18693252|IDA  go_function MAP kinase kinase activity|GO:0004708|11875555|TAS  go_function MAP kinase kinase activity|GO:0004708|18693252|IDA  go_function kinase activity|GO:0016301||ISS  go_function protein kinase activator activity|GO:0030295|18693252|IDA  product MKK9 (MAP KINASE KINASE 9); MAP kinase kinase/ kinase/ protein kinase activator  note MAP KINASE KINASE 9 (MKK9); FUNCTIONS IN: protein kinase activator activity, MAP kinase kinase activity, kinase activity; INVOLVED IN: in 6 processes; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATMKK7; MAP kinase kinase/ kinase (TAIR:AT1G18350.1); Has 92176 Blast hits to 91171 proteins in 3355 species: Archae - 67; Bacteria - 8278; Metazoa - 40091; Fungi - 8016; Plants - 18166; Viruses - 455; Other Eukaryotes - 17103 (source: NCBI BLink).  protein_id AT1G73500.1p  transcript_id AT1G73500.1  protein_id AT1G73500.1p  transcript_id AT1G73500.1  
At1g73510	chr1:027642651	0.0	C/27642651-27643118	AT1G73510.1  CDS  gene_syn T9L24.31, T9L24_31  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, root, pollen tube; EXPRESSED DURING: M germinated pollen stage; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G73510.1p  transcript_id AT1G73510.1  protein_id AT1G73510.1p  transcript_id AT1G73510.1  
At1g73530	chr1:027645140	0.0	C/27645140-27645386,27644212-27644280,27644021-27644127,27643801-27643923	AT1G73530.1  CDS  gene_syn T9L24.48, T9L24_48  go_component chloroplast|GO:0009507|18431481|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT5G54580.1); Has 18350 Blast hits to 14445 proteins in 600 species: Archae - 8; Bacteria - 920; Metazoa - 11039; Fungi - 2030; Plants - 2592; Viruses - 0; Other Eukaryotes - 1761 (source: NCBI BLink).  protein_id AT1G73530.1p  transcript_id AT1G73530.1  protein_id AT1G73530.1p  transcript_id AT1G73530.1  
At1g73540	chr1:027646378	0.0	C/27646378-27646571,27645880-27646282	AT1G73540.1  CDS  gene_syn Arabidopsis thaliana Nudix hydrolase homolog 21, T9L24.30, T9L24_30, atnudt21  gene atnudt21  go_component chloroplast|GO:0009507||IEA  go_function hydrolase activity|GO:0016787||IEA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product atnudt21 (Arabidopsis thaliana Nudix hydrolase homolog 21); hydrolase  note Arabidopsis thaliana Nudix hydrolase homolog 21 (atnudt21); FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), NUDIX hydrolase, core (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: atnudt4 (Arabidopsis thaliana Nudix hydrolase homolog 4); hydrolase (TAIR:AT1G18300.1); Has 819 Blast hits to 817 proteins in 227 species: Archae - 3; Bacteria - 284; Metazoa - 212; Fungi - 79; Plants - 132; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).  protein_id AT1G73540.1p  transcript_id AT1G73540.1  protein_id AT1G73540.1p  transcript_id AT1G73540.1  
At1g73550	chr1:027648203	0.0	C/27648203-27648536,27648024-27648094	AT1G73550.2  CDS  gene_syn T9L24.29  function Encodes a Protease inhibitor/seed storage/LTP family protein  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product lipid binding  note lipid binding; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT1G73560.1); Has 78 Blast hits to 78 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G73550.2p  transcript_id AT1G73550.2  protein_id AT1G73550.2p  transcript_id AT1G73550.2  
At1g73550	chr1:027648203	0.0	C/27648203-27648536,27648056-27648094,27647806-27647891	AT1G73550.1  CDS  gene_syn T9L24.29  function Encodes a Protease inhibitor/seed storage/LTP family protein  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product lipid binding  note lipid binding; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT1G73560.1); Has 78 Blast hits to 78 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G73550.1p  transcript_id AT1G73550.1  protein_id AT1G73550.1p  transcript_id AT1G73550.1  
At1g73560	chr1:027650126	0.0	C/27650126-27650456,27649975-27650010,27649768-27649844	AT1G73560.1  CDS  gene_syn T9L24.28  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: embryo; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT1G18280.1); Has 280 Blast hits to 280 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 280; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G73560.1p  transcript_id AT1G73560.1  protein_id AT1G73560.1p  transcript_id AT1G73560.1  
At1g73570	chr1:027650992	0.0	W/27650992-27651516,27651597-27651893,27651949-27652014,27652325-27652540,27652899-27653222,27653390-27653632,27653724-27653799,27653875-27653942	AT1G73570.1  CDS  gene_syn F6D5.4, F6D5_4  go_component endomembrane system|GO:0012505||IEA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product suppressor of lin-12-like protein-related / sel-1 protein-related  note suppressor of lin-12-like protein-related / sel-1 protein-related; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: suppressor of lin-12-like protein-related / sel-1 protein-related (TAIR:AT1G18260.1); Has 10975 Blast hits to 4576 proteins in 759 species: Archae - 0; Bacteria - 7044; Metazoa - 503; Fungi - 430; Plants - 71; Viruses - 21; Other Eukaryotes - 2906 (source: NCBI BLink).  protein_id AT1G73570.1p  transcript_id AT1G73570.1  protein_id AT1G73570.1p  transcript_id AT1G73570.1  
At1g73580	chr1:027654841	0.0	W/27654841-27654960,27655049-27655144,27655228-27655518	AT1G73580.1  CDS  gene_syn F6D5.3, F6D5_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT3G17980.1); Has 3675 Blast hits to 3037 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 2349; Fungi - 402; Plants - 643; Viruses - 0; Other Eukaryotes - 281 (source: NCBI BLink).  protein_id AT1G73580.1p  transcript_id AT1G73580.1  protein_id AT1G73580.1p  transcript_id AT1G73580.1  
At1g73590	chr1:027659772	0.0	W/27659772-27661017,27661170-27661404,27661593-27661678,27662329-27662486,27662583-27662659,27662810-27662876	AT1G73590.1  CDS  gene_syn ARABIDOPSIS THALIANA PIN-FORMED 1, ATPIN1, F6D5.2, F6D5_2, PIN-FORMED 1, PIN1  gene PIN1  function Encodes an auxin efflux carrier involved in shoot and root development. It is involved in the maintenance of embryonic auxin gradients. Loss of function severely affects organ initiation, pin1 mutants are characterised by an inflorescence meristem that does not initiate any flowers, resulting in the formation of a naked inflorescence stem. PIN1 is involved in the determination of leaf shape by actively promoting development of leaf margin serrations. In roots, the protein mainly resides at the basal end of the vascular cells, but weak signals can be detected in the epidermis and the cortex. Expression levels and polarity of this auxin efflux carrier change during primordium development suggesting that cycles of auxin build-up and depletion accompany, and may direct, different stages of primordium development. PIN1 action on plant development does not strictly require function of PGP1 and PGP19 proteins.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component basal plasma membrane|GO:0009925|11959844|IDA  go_component membrane|GO:0016020|11152613|ISS  go_component apical part of cell|GO:0045177|16107478|IDA  go_process gravitropism|GO:0009630|16601150|IMP  go_process photomorphogenesis|GO:0009640|16141452|TAS  go_process auxin polar transport|GO:0009926|16601150|IMP  go_process xylem and phloem pattern formation|GO:0010051|16943276|IMP  go_process leaf formation|GO:0010338|16971475|IGI  go_process leaf shaping|GO:0010358|16971475|IMP  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_process root development|GO:0048364|9856939|IMP  go_process shoot development|GO:0048367|11060241|IMP  go_function transporter activity|GO:0005215|9856939|TAS  go_function transporter activity|GO:0005215||ISS  product PIN1 (PIN-FORMED 1); transporter  note PIN-FORMED 1 (PIN1); FUNCTIONS IN: transporter activity; INVOLVED IN: in 9 processes; LOCATED IN: apical part of cell, plasma membrane, basal plasma membrane, membrane, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: PIN3 (PIN-FORMED 3); auxin:hydrogen symporter/ transporter (TAIR:AT1G70940.1); Has 4842 Blast hits to 3556 proteins in 525 species: Archae - 38; Bacteria - 2188; Metazoa - 780; Fungi - 143; Plants - 560; Viruses - 34; Other Eukaryotes - 1099 (source: NCBI BLink).  protein_id AT1G73590.1p  transcript_id AT1G73590.1  protein_id AT1G73590.1p  transcript_id AT1G73590.1  
At1g73600	chr1:027669224	0.0	W/27669224-27669278,27671033-27671148,27671312-27671449,27671554-27671691,27671799-27671942,27672022-27672132,27672214-27672355,27672486-27672766,27672845-27673006,27673087-27673140,27673227-27673400	AT1G73600.2  CDS  gene_syn F6D5.1, F6D5_1  go_process metabolic process|GO:0008152||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_function phosphoethanolamine N-methyltransferase activity|GO:0000234||ISS  product methyltransferase/ phosphoethanolamine N-methyltransferase  note methyltransferase/ phosphoethanolamine N-methyltransferase; FUNCTIONS IN: methyltransferase activity, phosphoethanolamine N-methyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: XPL1 (XIPOTL 1); methyltransferase/ phosphoethanolamine N-methyltransferase (TAIR:AT3G18000.1); Has 13966 Blast hits to 13672 proteins in 1499 species: Archae - 360; Bacteria - 8869; Metazoa - 275; Fungi - 572; Plants - 301; Viruses - 4; Other Eukaryotes - 3585 (source: NCBI BLink).  protein_id AT1G73600.2p  transcript_id AT1G73600.2  protein_id AT1G73600.2p  transcript_id AT1G73600.2  
At1g73602	chr1:027670626	0.0	W/27670626-27670703	AT1G73602.1  CDS  gene_syn CPuORF32, Conserved peptide upstream open reading frame 32  gene CPuORF32  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF32 represents a conserved upstream opening reading frame relative to major ORF AT1G73600.1  product CPuORF32 (Conserved peptide upstream open reading frame 32)  note Conserved peptide upstream open reading frame 32 (CPuORF32); Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G73602.1p  transcript_id AT1G73602.1  protein_id AT1G73602.1p  transcript_id AT1G73602.1  
At1g73600	chr1:027670825	0.0	W/27670825-27670837,27671033-27671148,27671312-27671449,27671554-27671691,27671799-27671942,27672022-27672132,27672214-27672355,27672486-27672766,27672845-27673006,27673087-27673140,27673227-27673400	AT1G73600.1  CDS  gene_syn F6D5.1, F6D5_1  go_process metabolic process|GO:0008152||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_function phosphoethanolamine N-methyltransferase activity|GO:0000234||ISS  product methyltransferase/ phosphoethanolamine N-methyltransferase  note methyltransferase/ phosphoethanolamine N-methyltransferase; FUNCTIONS IN: methyltransferase activity, phosphoethanolamine N-methyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: XPL1 (XIPOTL 1); methyltransferase/ phosphoethanolamine N-methyltransferase (TAIR:AT3G18000.1); Has 13964 Blast hits to 13670 proteins in 1499 species: Archae - 358; Bacteria - 8873; Metazoa - 275; Fungi - 570; Plants - 301; Viruses - 4; Other Eukaryotes - 3583 (source: NCBI BLink).  protein_id AT1G73600.1p  transcript_id AT1G73600.1  protein_id AT1G73600.1p  transcript_id AT1G73600.1  
At1g73603	chr1:027674360	0.0	W/27674360-27674420,27674700-27674911	AT1G73603.1  CDS  gene_syn LCR64, Low-molecular-weight cysteine-rich 64  gene LCR64  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR64 (Low-molecular-weight cysteine-rich 64)  note Low-molecular-weight cysteine-rich 64 (LCR64); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: LCR65 (Low-molecular-weight cysteine-rich 65) (TAIR:AT1G73607.1); Has 19 Blast hits to 19 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G73603.1p  transcript_id AT1G73603.1  protein_id AT1G73603.1p  transcript_id AT1G73603.1  
At1g73607	chr1:027676261	0.0	W/27676261-27676321,27676550-27676752	AT1G73607.1  CDS  gene_syn LCR65, Low-molecular-weight cysteine-rich 65  gene LCR65  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR65 (Low-molecular-weight cysteine-rich 65)  note Low-molecular-weight cysteine-rich 65 (LCR65); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G49715.1); Has 18 Blast hits to 18 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G73607.1p  transcript_id AT1G73607.1  protein_id AT1G73607.1p  transcript_id AT1G73607.1  
At1g73610	chr1:027678377	0.0	W/27678377-27678635,27678746-27678876,27678966-27679202,27679315-27679558,27679644-27679807	AT1G73610.1  CDS  gene_syn F25P22.2, F25P22_2  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function lipase activity|GO:0016298||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, embryo; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase, putative (TAIR:AT1G23500.1); Has 1902 Blast hits to 1883 proteins in 198 species: Archae - 0; Bacteria - 318; Metazoa - 1; Fungi - 23; Plants - 1539; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G73610.1p  transcript_id AT1G73610.1  protein_id AT1G73610.1p  transcript_id AT1G73610.1  
At1g73620	chr1:027681432	0.0	W/27681432-27681552,27681699-27682023,27682606-27682954	AT1G73620.1  CDS  gene_syn F25P22.3, F25P22_3  go_component membrane|GO:0016020|17432890|IDA  go_process response to other organism|GO:0051707||ISS  product thaumatin-like protein, putative / pathogenesis-related protein, putative  note thaumatin-like protein, putative / pathogenesis-related protein, putative; INVOLVED IN: response to other organism; LOCATED IN: membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: ATLP-1 (TAIR:AT1G18250.2); Has 1022 Blast hits to 1020 proteins in 137 species: Archae - 0; Bacteria - 12; Metazoa - 47; Fungi - 43; Plants - 915; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G73620.1p  transcript_id AT1G73620.1  protein_id AT1G73620.1p  transcript_id AT1G73620.1  
At1g73630	chr1:027684748	0.0	W/27684748-27685239	AT1G73630.1  CDS  gene_syn F25P22.4, F25P22_4  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding protein, putative  note calcium-binding protein, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding protein, putative (TAIR:AT1G18210.2); Has 18063 Blast hits to 11407 proteins in 1254 species: Archae - 0; Bacteria - 83; Metazoa - 6710; Fungi - 4550; Plants - 3769; Viruses - 0; Other Eukaryotes - 2951 (source: NCBI BLink).  protein_id AT1G73630.1p  transcript_id AT1G73630.1  protein_id AT1G73630.1p  transcript_id AT1G73630.1  
At1g73640	chr1:027687033	0.0	W/27687033-27687253,27687507-27687987	AT1G73640.1  CDS  gene_syn Arabidopsis Rab GTPase homolog A6a, AtRABA6a, F25P22.5, F25P22_5  gene AtRABA6a  go_component plasma membrane|GO:0005886|17644812|IDA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product AtRABA6a (Arabidopsis Rab GTPase homolog A6a); GTP binding  note Arabidopsis Rab GTPase homolog A6a (AtRABA6a); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: AtRABA6b (Arabidopsis Rab GTPase homolog A6b); GTP binding / GTPase/ protein binding (TAIR:AT1G18200.1); Has 21838 Blast hits to 21806 proteins in 601 species: Archae - 17; Bacteria - 91; Metazoa - 12430; Fungi - 2491; Plants - 1872; Viruses - 19; Other Eukaryotes - 4918 (source: NCBI BLink).  protein_id AT1G73640.1p  transcript_id AT1G73640.1  protein_id AT1G73640.1p  transcript_id AT1G73640.1  
At1g73650	chr1:027689602	0.0	C/27689602-27689606,27689444-27689525,27689120-27689353,27688895-27689023,27688761-27688822,27688561-27688666,27688420-27688461	AT1G73650.4  CDS  gene_syn F25P22.7, F25P22_7  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function oxidoreductase activity, acting on the CH-CH group of donors|GO:0016627||IEA  product oxidoreductase, acting on the CH-CH group of donors  note oxidoreductase, acting on the CH-CH group of donors; FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors; INVOLVED IN: lipid metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal (InterPro:IPR001104), Protein of unknown function DUF1295 (InterPro:IPR010721); BEST Arabidopsis thaliana protein match is: oxidoreductase, acting on the CH-CH group of donors (TAIR:AT1G18180.1); Has 1543 Blast hits to 1543 proteins in 196 species: Archae - 0; Bacteria - 273; Metazoa - 71; Fungi - 77; Plants - 59; Viruses - 0; Other Eukaryotes - 1063 (source: NCBI BLink).  protein_id AT1G73650.4p  transcript_id AT1G73650.4  protein_id AT1G73650.4p  transcript_id AT1G73650.4  
At1g73650	chr1:027689602	0.0	C/27689602-27689606,27689444-27689525,27689120-27689353,27688895-27689023,27688761-27688822,27688561-27688666,27688449-27688457	AT1G73650.1  CDS  gene_syn F25P22.7, F25P22_7  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function oxidoreductase activity, acting on the CH-CH group of donors|GO:0016627||IEA  product oxidoreductase, acting on the CH-CH group of donors  note oxidoreductase, acting on the CH-CH group of donors; FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors; INVOLVED IN: lipid metabolic process; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal (InterPro:IPR001104), Protein of unknown function DUF1295 (InterPro:IPR010721); BEST Arabidopsis thaliana protein match is: oxidoreductase, acting on the CH-CH group of donors (TAIR:AT1G18180.1); Has 1535 Blast hits to 1535 proteins in 192 species: Archae - 0; Bacteria - 266; Metazoa - 71; Fungi - 76; Plants - 59; Viruses - 0; Other Eukaryotes - 1063 (source: NCBI BLink).  protein_id AT1G73650.1p  transcript_id AT1G73650.1  protein_id AT1G73650.1p  transcript_id AT1G73650.1  
At1g73650	chr1:027690115	0.0	C/27690115-27690165,27689922-27689991,27689762-27689829,27689602-27689663,27689444-27689525,27689120-27689353,27688895-27689023,27688761-27688822,27688549-27688666	AT1G73650.2  CDS  gene_syn F25P22.7, F25P22_7  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function oxidoreductase activity, acting on the CH-CH group of donors|GO:0016627||IEA  product oxidoreductase, acting on the CH-CH group of donors  note oxidoreductase, acting on the CH-CH group of donors; FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors; INVOLVED IN: lipid metabolic process; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal (InterPro:IPR001104), Protein of unknown function DUF1295 (InterPro:IPR010721); BEST Arabidopsis thaliana protein match is: oxidoreductase, acting on the CH-CH group of donors (TAIR:AT1G18180.1); Has 1671 Blast hits to 1671 proteins in 197 species: Archae - 0; Bacteria - 270; Metazoa - 72; Fungi - 80; Plants - 62; Viruses - 0; Other Eukaryotes - 1187 (source: NCBI BLink).  protein_id AT1G73650.2p  transcript_id AT1G73650.2  protein_id AT1G73650.2p  transcript_id AT1G73650.2  
At1g73650	chr1:027690115	0.0	C/27690115-27690165,27689922-27689991,27689762-27689829,27689602-27689663,27689444-27689525,27689120-27689353,27688895-27689023,27688761-27688822,27688561-27688666,27688409-27688453	AT1G73650.3  CDS  gene_syn F25P22.7, F25P22_7  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function oxidoreductase activity, acting on the CH-CH group of donors|GO:0016627||IEA  product oxidoreductase, acting on the CH-CH group of donors  note oxidoreductase, acting on the CH-CH group of donors; FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors; INVOLVED IN: lipid metabolic process; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal (InterPro:IPR001104), Protein of unknown function DUF1295 (InterPro:IPR010721); BEST Arabidopsis thaliana protein match is: oxidoreductase, acting on the CH-CH group of donors (TAIR:AT1G18180.1); Has 1671 Blast hits to 1671 proteins in 197 species: Archae - 0; Bacteria - 270; Metazoa - 72; Fungi - 80; Plants - 62; Viruses - 0; Other Eukaryotes - 1187 (source: NCBI BLink).  protein_id AT1G73650.3p  transcript_id AT1G73650.3  protein_id AT1G73650.3p  transcript_id AT1G73650.3  
At1g73655	chr1:027691483	0.0	C/27691483-27691781,27691235-27691279,27690468-27690828	AT1G73655.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process protein folding|GO:0006457||IEA  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  go_function FK506 binding|GO:0005528||ISS  product FK506 binding / peptidyl-prolyl cis-trans isomerase  note FK506 binding / peptidyl-prolyl cis-trans isomerase; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT1G18170.1); Has 1372 Blast hits to 1363 proteins in 454 species: Archae - 0; Bacteria - 824; Metazoa - 65; Fungi - 8; Plants - 197; Viruses - 0; Other Eukaryotes - 278 (source: NCBI BLink).  protein_id AT1G73655.1p  transcript_id AT1G73655.1  protein_id AT1G73655.1p  transcript_id AT1G73655.1  
At1g73660	chr1:027696158	0.0	C/27696158-27696718,27695624-27696064,27695438-27695541,27694137-27695299,27694013-27694053,27693832-27693900,27693638-27693738,27693295-27693373,27693104-27693202,27692926-27692994,27692777-27692826,27692507-27692683,27692247-27692385	AT1G73660.1  CDS  gene_syn F25P22.8, F25P22_8  function Encodes a protein with similarity to MAPKKKs. May function as a negative regulator of salt tolerance.  go_process response to salt stress|GO:0009651|18299802|IMP  go_function MAP kinase kinase kinase activity|GO:0004709|18299802|ISS  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, MAP kinase kinase kinase activity, kinase activity; INVOLVED IN: response to salt stress; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Ubiquitin interacting motif (InterPro:IPR003903), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G18160.1); Has 92283 Blast hits to 90152 proteins in 3393 species: Archae - 39; Bacteria - 7329; Metazoa - 41336; Fungi - 7545; Plants - 19032; Viruses - 467; Other Eukaryotes - 16535 (source: NCBI BLink).  protein_id AT1G73660.1p  transcript_id AT1G73660.1  protein_id AT1G73660.1p  transcript_id AT1G73660.1  
At1g73670	chr1:027700212	0.0	W/27700212-27700430,27700511-27700919,27701003-27701130,27701232-27701291,27701506-27701655,27701832-27701987,27702165-27702302,27702384-27702457,27702540-27702641,27702777-27703005,27703103-27703168	AT1G73670.1  CDS  gene_syn ATMPK15, F25P22.9, F25P22_9  gene ATMPK15  function member of MAP Kinase  go_process signal transduction|GO:0007165|12119167|IC  go_function MAP kinase activity|GO:0004707|11544109|ISS  go_function MAP kinase activity|GO:0004707|12119167|ISS  go_function kinase activity|GO:0016301||ISS  product ATMPK15; MAP kinase/ kinase  note ATMPK15; FUNCTIONS IN: MAP kinase activity, kinase activity; INVOLVED IN: signal transduction; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATMPK8; MAP kinase (TAIR:AT1G18150.2); Has 86359 Blast hits to 85442 proteins in 2568 species: Archae - 41; Bacteria - 7427; Metazoa - 37500; Fungi - 8027; Plants - 16365; Viruses - 531; Other Eukaryotes - 16468 (source: NCBI BLink).  protein_id AT1G73670.1p  transcript_id AT1G73670.1  protein_id AT1G73670.1p  transcript_id AT1G73670.1  
At1g73680	chr1:027707325	0.0	C/27707325-27707417,27706888-27707148,27706179-27706328,27705942-27706072,27705641-27705854,27705134-27705507,27704849-27705051,27704533-27704776,27704221-27704446	AT1G73680.1  CDS  gene_syn F25P22.10, F25P22_10  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function heme binding|GO:0020037||IEA  go_component cellular_component|GO:0005575||ND  go_process response to other organism|GO:0051707||ISS  go_function oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|GO:0016702||ISS  product pathogen-responsive alpha-dioxygenase, putative  note pathogen-responsive alpha-dioxygenase, putative; FUNCTIONS IN: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, response to other organism; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Haem peroxidase, animal (InterPro:IPR002007); BEST Arabidopsis thaliana protein match is: DOX1; lipoxygenase (TAIR:AT3G01420.1); Has 1400 Blast hits to 1275 proteins in 179 species: Archae - 0; Bacteria - 83; Metazoa - 1124; Fungi - 110; Plants - 40; Viruses - 3; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT1G73680.1p  transcript_id AT1G73680.1  protein_id AT1G73680.1p  transcript_id AT1G73680.1  
At1g73687	chr1:027713234	0.0	C/27713234-27713415	AT1G73687.1  miRNA  gene_syn MICRORNA 159, MICRORNA 159A, MIR159, MIR159A  gene MIR159A  function Encodes a microRNA that targets several MYB family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUUGGAUUGAAGGGAGCUCUA. Functions redundantly with MIR159B. Plants that are doubly mutated for MIR159AB have curled leaves and reduced stature.  go_component cellular_component|GO:0005575||ND  go_process response to abscisic acid stimulus|GO:0009737|17217461|IEP  go_process negative regulation of abscisic acid mediated signaling|GO:0009788|17217461|IMP  go_process gene silencing by miRNA|GO:0035195|15200956|TAS  go_function molecular_function|GO:0003674||ND  product MIR159A (MICRORNA 159A); miRNA  transcript_id AT1G73687.1  
At1g73690	chr1:027715113	0.0	W/27715113-27715208,27715492-27715790,27715886-27715994,27716080-27716205,27716283-27716518,27716600-27716881,27716970-27717018	AT1G73690.1  CDS  gene_syn AT;CDKD;1, CAK3AT, CDKD1;1, CYCLIN-DEPENDENT KINASE D1, CYCLIN-DEPENDENT KINASE D1;1, F25P22.11, F25P22_11  gene CDKD1;1  function cyclin dependent kinase activator CDKD;1. Nuclear localization. Involved in cell cycle regulation and cell differentiation.  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_process cell differentiation|GO:0030154|16024551|TAS  go_process regulation of cell cycle|GO:0051726|16024551|TAS  go_function kinase activity|GO:0016301||ISS  product CDKD1;1 (CYCLIN-DEPENDENT KINASE D1;1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note CYCLIN-DEPENDENT KINASE D1;1 (CDKD1;1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: cell differentiation, regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: shoot apex, embryo, flower, root, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CDKD1;3 (CYCLIN-DEPENDENT KINASE D1;3); kinase/ protein kinase (TAIR:AT1G18040.1); Has 90847 Blast hits to 89671 proteins in 3008 species: Archae - 49; Bacteria - 7792; Metazoa - 39621; Fungi - 8380; Plants - 17482; Viruses - 391; Other Eukaryotes - 17132 (source: NCBI BLink).  protein_id AT1G73690.1p  transcript_id AT1G73690.1  protein_id AT1G73690.1p  transcript_id AT1G73690.1  
At1g73700	chr1:027719394	0.0	C/27719394-27719630,27718725-27719269,27718562-27718648,27718416-27718472,27718087-27718325,27717879-27717997,27717700-27717786,27717554-27717613	AT1G73700.1  CDS  gene_syn F25P22.12, F25P22_12  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: drug transporter activity, antiporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux protein-related (TAIR:AT5G52450.1); Has 5844 Blast hits to 5786 proteins in 1086 species: Archae - 126; Bacteria - 3724; Metazoa - 133; Fungi - 210; Plants - 704; Viruses - 0; Other Eukaryotes - 947 (source: NCBI BLink).  protein_id AT1G73700.1p  transcript_id AT1G73700.1  protein_id AT1G73700.1p  transcript_id AT1G73700.1  
At1g73710	chr1:027721190	0.0	W/27721190-27724165	AT1G73710.1  CDS  gene_syn F25P22.13, F25P22_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G23020.1); Has 27768 Blast hits to 6414 proteins in 199 species: Archae - 2; Bacteria - 35; Metazoa - 962; Fungi - 509; Plants - 25092; Viruses - 0; Other Eukaryotes - 1168 (source: NCBI BLink).  protein_id AT1G73710.1p  transcript_id AT1G73710.1  protein_id AT1G73710.1p  transcript_id AT1G73710.1  
At1g73720	chr1:027725059	0.0	W/27725059-27725084,27725596-27725806,27725897-27726049,27726498-27726546,27726790-27726873,27727026-27727129,27727265-27727351,27727449-27727502,27727868-27727963,27728127-27728251,27728498-27728624,27728723-27728782,27728881-27728988,27729083-27729183,27729326-27729377,27729624-27729722	AT1G73720.1  CDS  gene_syn F25P22.14, F25P22_14  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G49660.1); Has 58238 Blast hits to 23935 proteins in 662 species: Archae - 54; Bacteria - 6941; Metazoa - 26780; Fungi - 10856; Plants - 5091; Viruses - 6; Other Eukaryotes - 8510 (source: NCBI BLink).  protein_id AT1G73720.1p  transcript_id AT1G73720.1  protein_id AT1G73720.1p  transcript_id AT1G73720.1  
At1g73730	chr1:027732329	0.0	C/27732329-27732363,27730434-27732102	AT1G73730.1  CDS  gene_syn EIL3, ETHYLENE-INSENSITIVE3-LIKE3, F25P22.15, F25P22_15, SLIM1, SULFUR LIMITATION 1  gene EIL3  function Encodes a putative transcription factor involved in ethylene signalling. Isolated DNA binding domain has been shown to bind DNA in vitro.  go_component nucleus|GO:0005634||IEA  go_process sulfur metabolic process|GO:0006790|17114350|IMP  go_process ethylene mediated signaling pathway|GO:0009873|9215635|TAS  go_process cellular response to sulfate starvation|GO:0009970|17114350|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677|15811366|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9215635|TAS  product EIL3 (ETHYLENE-INSENSITIVE3-LIKE3); DNA binding / transcription factor  note ETHYLENE-INSENSITIVE3-LIKE3 (EIL3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: cellular response to sulfate starvation, ethylene mediated signaling pathway, sulfur metabolic process, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ethylene insensitive 3 (InterPro:IPR006957); BEST Arabidopsis thaliana protein match is: EIN3 (ETHYLENE-INSENSITIVE3); transcription factor (TAIR:AT3G20770.1); Has 184 Blast hits to 184 proteins in 57 species: Archae - 0; Bacteria - 39; Metazoa - 3; Fungi - 1; Plants - 133; Viruses - 4; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G73730.1p  transcript_id AT1G73730.1  protein_id AT1G73730.1p  transcript_id AT1G73730.1  
At1g73740	chr1:027734451	0.0	W/27734451-27735385,27735471-27735579,27735677-27735812,27735893-27736008	AT1G73740.1  CDS  gene_syn F25P22.16, F25P22_16  go_component chloroplast|GO:0009507||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process lipid glycosylation|GO:0030259||IEA  go_process biosynthetic process|GO:0009058||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyl transferase family 28 protein  note glycosyl transferase family 28 protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: lipid glycosylation, biosynthetic process, carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 28 (InterPro:IPR004276), Glycosyl transferase, family 28, C-terminal (InterPro:IPR007235); Has 5269 Blast hits to 5268 proteins in 1326 species: Archae - 0; Bacteria - 2991; Metazoa - 4; Fungi - 2; Plants - 15; Viruses - 0; Other Eukaryotes - 2257 (source: NCBI BLink).  protein_id AT1G73740.1p  transcript_id AT1G73740.1  protein_id AT1G73740.1p  transcript_id AT1G73740.1  
At1g73750	chr1:027736659	0.0	W/27736659-27736910,27736995-27737072,27737205-27737394,27737493-27737620,27737732-27737834,27737908-27738008,27738108-27738282,27738372-27738542,27738644-27738744,27738828-27738887	AT1G73750.1  CDS  gene_syn F25P22.17, F25P22_17  product unknown protein  note EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031088, alpha/beta hydrolase, At1g15070 (InterPro:IPR016969); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15060.1); Has 121 Blast hits to 101 proteins in 28 species: Archae - 0; Bacteria - 44; Metazoa - 8; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G73750.1p  transcript_id AT1G73750.1  protein_id AT1G73750.1p  transcript_id AT1G73750.1  
At1g73760	chr1:027740580	0.0	C/27740580-27741161,27740011-27740160,27739830-27739928,27739591-27739728,27739366-27739500	AT1G73760.1  CDS  gene_syn F25P22.18, F25P22_18  go_component chloroplast|GO:0009507||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G17970.1); Has 5809 Blast hits to 5801 proteins in 204 species: Archae - 0; Bacteria - 6; Metazoa - 2107; Fungi - 422; Plants - 2285; Viruses - 13; Other Eukaryotes - 976 (source: NCBI BLink).  protein_id AT1G73760.1p  transcript_id AT1G73760.1  protein_id AT1G73760.1p  transcript_id AT1G73760.1  
At1g73770	chr1:027742215	0.0	W/27742215-27742416,27742583-27742956	AT1G73770.1  CDS  gene_syn F25P22.19, F25P22_19  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18240.2); Has 868 Blast hits to 508 proteins in 62 species: Archae - 0; Bacteria - 697; Metazoa - 29; Fungi - 37; Plants - 37; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT1G73770.1p  transcript_id AT1G73770.1  protein_id AT1G73770.1p  transcript_id AT1G73770.1  
At1g73770	chr1:027742215	0.0	W/27742215-27742416,27742583-27742956	AT1G73770.2  CDS  gene_syn F25P22.19, F25P22_19  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18240.2); Has 868 Blast hits to 508 proteins in 62 species: Archae - 0; Bacteria - 697; Metazoa - 29; Fungi - 37; Plants - 37; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT1G73770.2p  transcript_id AT1G73770.2  protein_id AT1G73770.2p  transcript_id AT1G73770.2  
At1g73780	chr1:027743872	0.0	W/27743872-27744168	AT1G73780.1  CDS  gene_syn F25P22.20, F25P22_20  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT3G18280.1); Has 188 Blast hits to 185 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 188; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G73780.1p  transcript_id AT1G73780.1  protein_id AT1G73780.1p  transcript_id AT1G73780.1  
At1g73790	chr1:027745019	0.0	W/27745019-27745222	AT1G73790.1  CDS  gene_syn F25P22.21, F25P22_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09550.1); Has 149 Blast hits to 149 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 45; Fungi - 35; Plants - 40; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G73790.1p  transcript_id AT1G73790.1  protein_id AT1G73790.1p  transcript_id AT1G73790.1  
At1g73805	chr1:027749087	0.0	C/27749087-27749178,27748712-27748790,27747515-27748052,27746560-27746720,27746289-27746477,27746069-27746165,27745761-27745960	AT1G73805.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product calmodulin binding  note calmodulin binding; FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Calmodulin binding protein-like (InterPro:IPR012416); BEST Arabidopsis thaliana protein match is: calmodulin-binding protein (TAIR:AT5G57580.1); Has 153 Blast hits to 153 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G73805.1p  transcript_id AT1G73805.1  protein_id AT1G73805.1p  transcript_id AT1G73805.1  
At1g73810	chr1:027754594	0.0	C/27754594-27755208,27752506-27753147	AT1G73810.1  CDS  gene_syn F25P22.23, F25P22_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF266, plant (InterPro:IPR004949); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68390.1); Has 326 Blast hits to 326 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 304; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT1G73810.1p  transcript_id AT1G73810.1  protein_id AT1G73810.1p  transcript_id AT1G73810.1  
At1g73820	chr1:027756944	0.0	C/27756944-27757158,27756443-27756588,27755740-27755960	AT1G73820.1  CDS  gene_syn F25P22.24, F25P22_24  go_component chloroplast|GO:0009507|18431481|IDA  go_process mRNA processing|GO:0006397||IEA  go_function phosphoprotein phosphatase activity|GO:0004721||IEA  product Ssu72-like family protein  note Ssu72-like family protein; FUNCTIONS IN: phosphoprotein phosphatase activity; INVOLVED IN: mRNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II subunit A, C-terminal domain phosphatase (InterPro:IPR006811); Has 321 Blast hits to 320 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 181; Fungi - 100; Plants - 25; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G73820.1p  transcript_id AT1G73820.1  protein_id AT1G73820.1p  transcript_id AT1G73820.1  
At1g73830	chr1:027760027	0.0	W/27760027-27760398,27760509-27760625,27760714-27760779,27760854-27760922,27761026-27761103,27761263-27761346	AT1G73830.1  CDS  gene_syn BEE3, BR ENHANCED EXPRESSION 3, F25P22.25, F25P22_25  gene BEE3  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product BEE3 (BR ENHANCED EXPRESSION 3); DNA binding / transcription factor  note BR ENHANCED EXPRESSION 3 (BEE3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BEE1 (BR Enhanced Expression 1); transcription factor (TAIR:AT1G18400.1); Has 1185 Blast hits to 1185 proteins in 70 species: Archae - 0; Bacteria - 4; Metazoa - 6; Fungi - 25; Plants - 1146; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G73830.1p  transcript_id AT1G73830.1  protein_id AT1G73830.1p  transcript_id AT1G73830.1  
At1g73840	chr1:027766233	0.0	C/27766233-27766328,27766016-27766093,27765704-27765742,27765061-27765618,27764866-27764946,27764300-27764488,27763937-27764062	AT1G73840.1  CDS  gene_syn ENHANCED SILENCING PHENOTYPE 1, ESP1, F25P22.26, F25P22_26  gene ESP1  function Resembles the CstF64 family of RNA processing factors that are conserved between yeast and mammals. In mammals, CstF64 is a component of the CstF complex which is required for mRNA 3 end formation along with other factors.  go_component cellular_component|GO:0005575||ND  go_process RNA processing|GO:0006396|17008405|IMP  go_process posttranscriptional gene silencing by RNA|GO:0035194|17008405|IMP  go_function molecular_function|GO:0003674||ND  product ESP1 (ENHANCED SILENCING PHENOTYPE 1)  note ENHANCED SILENCING PHENOTYPE 1 (ESP1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: posttranscriptional gene silencing by RNA, RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: cleavage stimulation factor, putative (TAIR:AT1G71800.1); Has 14998 Blast hits to 10748 proteins in 526 species: Archae - 6; Bacteria - 727; Metazoa - 7671; Fungi - 3348; Plants - 1570; Viruses - 188; Other Eukaryotes - 1488 (source: NCBI BLink).  protein_id AT1G73840.1p  transcript_id AT1G73840.1  protein_id AT1G73840.1p  transcript_id AT1G73840.1  
At1g73850	chr1:027767949	0.0	W/27767949-27768411,27768743-27769069,27769168-27769572,27769659-27769891,27770135-27770386	AT1G73850.1  CDS  gene_syn F2P9.28, F2P9_28  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  product structural constituent of ribosome  note structural constituent of ribosome; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e (InterPro:IPR008195), Protein of unknown function DUF1666 (InterPro:IPR012870); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT3G20260.1); Has 1243 Blast hits to 1064 proteins in 158 species: Archae - 0; Bacteria - 47; Metazoa - 406; Fungi - 133; Plants - 79; Viruses - 42; Other Eukaryotes - 536 (source: NCBI BLink).  protein_id AT1G73850.1p  transcript_id AT1G73850.1  protein_id AT1G73850.1p  transcript_id AT1G73850.1  
At1g73860	chr1:027775749	0.0	C/27775749-27775977,27775516-27775643,27775348-27775431,27775167-27775244,27774984-27775076,27774868-27774897,27774601-27774771,27773988-27774518,27773828-27773909,27773636-27773731,27773371-27773550,27773117-27773223,27772855-27773033,27772592-27772759,27772242-27772495,27771997-27772160,27771602-27771906,27771376-27771515,27771188-27771246	AT1G73860.1  CDS  gene_syn F2P9.27, F2P9_27  go_component microtubule associated complex|GO:0005875||IEA  go_component chloroplast|GO:0009507||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product ATP binding / microtubule motor  note ATP binding / microtubule motor; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex, chloroplast; EXPRESSED IN: petal, male gametophyte, sepal, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin motor protein-related (TAIR:AT1G18410.1); Has 111224 Blast hits to 59442 proteins in 1863 species: Archae - 763; Bacteria - 11096; Metazoa - 55522; Fungi - 7915; Plants - 3892; Viruses - 402; Other Eukaryotes - 31634 (source: NCBI BLink).  protein_id AT1G73860.1p  transcript_id AT1G73860.1  protein_id AT1G73860.1p  transcript_id AT1G73860.1  
At1g73870	chr1:027779214	0.0	W/27779214-27780131,27780262-27780522	AT1G73870.1  CDS  gene_syn F2P9.26, F2P9_26  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (B-box type) family protein  note zinc finger (B-box type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: zinc finger (B-box type) family protein (TAIR:AT1G25440.1); Has 2021 Blast hits to 1311 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1960; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT1G73870.1p  transcript_id AT1G73870.1  protein_id AT1G73870.1p  transcript_id AT1G73870.1  
At1g73875	chr1:027781112	0.0	W/27781112-27781403,27781542-27781705,27781779-27781844,27781918-27781970,27782312-27782393,27782619-27782668,27782788-27782860,27783086-27783178,27783264-27783296,27783418-27783509,27783742-27783874,27784066-27784151,27784281-27784365,27784509-27784571	AT1G73875.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product endonuclease/exonuclease/phosphatase family protein  note endonuclease/exonuclease/phosphatase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18500.2); Has 903 Blast hits to 878 proteins in 155 species: Archae - 0; Bacteria - 13; Metazoa - 437; Fungi - 152; Plants - 166; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).  protein_id AT1G73875.1p  transcript_id AT1G73875.1  protein_id AT1G73875.1p  transcript_id AT1G73875.1  
At1g73880	chr1:027785143	0.0	W/27785143-27786564	AT1G73880.1  CDS  gene_syn F2P9.25, F2P9_25, UDP-GLUCOSYL TRANSFERASE 89B1, UGT89B1  gene UGT89B1  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  go_function quercetin 3-O-glucosyltransferase activity|GO:0080043|15352060|IDA  go_function quercetin 7-O-glucosyltransferase activity|GO:0080044|15352060|IDA  go_function quercetin 4 -O-glucosyltransferase activity|GO:0080046|15352060|IDA  product UGT89B1 (UDP-GLUCOSYL TRANSFERASE 89B1); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ quercetin 4 -O-glucosyltransferase/ quercetin 7-O-glucosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note UDP-GLUCOSYL TRANSFERASE 89B1 (UGT89B1); FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT1G51210.1); Has 3550 Blast hits to 3501 proteins in 241 species: Archae - 0; Bacteria - 40; Metazoa - 762; Fungi - 14; Plants - 2648; Viruses - 58; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT1G73880.1p  transcript_id AT1G73880.1  protein_id AT1G73880.1p  transcript_id AT1G73880.1  
At1g73885	chr1:027786864	0.0	W/27786864-27786987,27787083-27787324,27787417-27787582,27787662-27787708	AT1G73885.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; Has 18 Blast hits to 18 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G73885.1p  transcript_id AT1G73885.1  protein_id AT1G73885.1p  transcript_id AT1G73885.1  
At1g73890	chr1:027788322	0.0	C/27788322-27788658,27788136-27788234,27787903-27788048	AT1G73890.1  CDS  gene_syn F2P9.24, F2P9_24  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to membrane; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3) (TAIR:AT2G44290.1); Has 375 Blast hits to 371 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 375; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G73890.1p  transcript_id AT1G73890.1  protein_id AT1G73890.1p  transcript_id AT1G73890.1  
At1g73900	chr1:027788983	0.0	W/27788983-27789054	AT1G73900.1  tRNA  gene_syn 60008.TRNA-ASP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asp (anticodon: GTC)  transcript_id AT1G73900.1  
At1g73910	chr1:027789293	0.0	W/27789293-27789305,27789442-27789533,27789663-27789809,27789897-27789970,27790076-27790187	AT1G73910.1  CDS  gene_syn ATARP4A, Actin-related proteins 4A, F2P9.22, F2P9_22  gene ATARP4A  function Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP family of genes. Component of chromatin remodeling complexes, involved in chromatin-mediated gene regulation.  go_function protein binding|GO:0005515||IEA  go_function structural constituent of cytoskeleton|GO:0005200||ISS  product ATARP4A (Actin-related proteins 4A); protein binding / structural constituent of cytoskeleton  note Actin-related proteins 4A (ATARP4A); FUNCTIONS IN: protein binding, structural constituent of cytoskeleton; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, seedling growth, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: ATARP4; structural constituent of cytoskeleton (TAIR:AT1G18450.1); Has 6642 Blast hits to 6637 proteins in 1345 species: Archae - 0; Bacteria - 2; Metazoa - 3555; Fungi - 1143; Plants - 602; Viruses - 2; Other Eukaryotes - 1338 (source: NCBI BLink).  protein_id AT1G73910.1p  transcript_id AT1G73910.1  protein_id AT1G73910.1p  transcript_id AT1G73910.1  
At1g73920	chr1:027791194	0.0	W/27791194-27791234,27791601-27791774,27791859-27792255,27792354-27792652,27792747-27792815,27792915-27792971,27793397-27793449,27793540-27793615,27793750-27794698	AT1G73920.1  CDS  gene_syn F2P9.21, F2P9_21  go_process glycerol biosynthetic process|GO:0006114||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_component cellular_component|GO:0005575||ND  go_function lipase activity|GO:0016298||ISS  product lipase family protein  note lipase family protein; FUNCTIONS IN: lipase activity; INVOLVED IN: glycerol biosynthetic process, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: AB-hydrolase associated lipase region (InterPro:IPR006693); BEST Arabidopsis thaliana protein match is: lipase family protein (TAIR:AT1G18460.1); Has 1383 Blast hits to 1365 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 1044; Fungi - 184; Plants - 87; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT1G73920.1p  transcript_id AT1G73920.1  protein_id AT1G73920.1p  transcript_id AT1G73920.1  
At1g73920	chr1:027791767	0.0	W/27791767-27791774,27791859-27792255,27792354-27792652,27792747-27792815,27792915-27792971,27793397-27793449,27793540-27793615,27793750-27794698	AT1G73920.2  CDS  gene_syn F2P9.21, F2P9_21  go_process lipid metabolic process|GO:0006629||IEA  go_component cellular_component|GO:0005575||ND  go_function lipase activity|GO:0016298||ISS  product lipase family protein  note lipase family protein; FUNCTIONS IN: lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: AB-hydrolase associated lipase region (InterPro:IPR006693); BEST Arabidopsis thaliana protein match is: lipase family protein (TAIR:AT1G18460.1); Has 1383 Blast hits to 1365 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 1044; Fungi - 184; Plants - 87; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT1G73920.2p  transcript_id AT1G73920.2  protein_id AT1G73920.2p  transcript_id AT1G73920.2  
At1g73930	chr1:027796018	0.0	C/27796018-27797534,27795753-27795945,27795347-27795508	AT1G73930.1  CDS  gene_syn F2P9.20, F2P9_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1630 (InterPro:IPR012860); Has 216 Blast hits to 196 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 22; Plants - 20; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT1G73930.1p  transcript_id AT1G73930.1  protein_id AT1G73930.1p  transcript_id AT1G73930.1  
At1g73930	chr1:027796018	0.0	C/27796018-27797534,27795753-27795945,27795347-27795508	AT1G73930.2  CDS  gene_syn F2P9.20, F2P9_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1630 (InterPro:IPR012860); Has 216 Blast hits to 196 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 22; Plants - 20; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT1G73930.2p  transcript_id AT1G73930.2  protein_id AT1G73930.2p  transcript_id AT1G73930.2  
At1g73940	chr1:027799280	0.0	C/27799280-27799522,27798519-27798731	AT1G73940.1  CDS  gene_syn F2P9.19, F2P9_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49410.2); Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G73940.1p  transcript_id AT1G73940.1  protein_id AT1G73940.1p  transcript_id AT1G73940.1  
At1g73950	chr1:027804361	0.0	C/27804361-27804476,27803595-27803685,27803351-27803435,27803054-27803138,27802614-27802683,27802203-27802272,27801806-27801851,27801459-27801705,27801173-27801378,27800955-27801029,27800800-27800869,27800588-27800668,27800383-27800462,27800126-27800204	AT1G73950.1  CDS  gene_syn F2P9.18, F2P9_18  go_component vacuole|GO:0005773|15539469|IDA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G18470.1); Has 2260 Blast hits to 2161 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 1443; Fungi - 6; Plants - 299; Viruses - 235; Other Eukaryotes - 277 (source: NCBI BLink).  protein_id AT1G73950.1p  transcript_id AT1G73950.1  protein_id AT1G73950.1p  transcript_id AT1G73950.1  
At1g73960	chr1:027814306	0.0	C/27814306-27814433,27813724-27814057,27813488-27813633,27813309-27813375,27812641-27812840,27812402-27812555,27811952-27812036,27811750-27811841,27811513-27811638,27811320-27811373,27811159-27811227,27810494-27810591,27810037-27810384,27809841-27809928,27809463-27809588,27809321-27809377,27808674-27808753,27808548-27808590,27807945-27808031,27807664-27807753,27807227-27807285,27807054-27807144,27806797-27806962,27806523-27806706,27805173-27806373	AT1G73960.1  CDS  gene_syn F2P9.17, F2P9_17, TAF2, TBP-ASSOCIATED FACTOR 2  gene TAF2  go_function metallopeptidase activity|GO:0008237||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product TAF2 (TBP-ASSOCIATED FACTOR 2); metallopeptidase/ zinc ion binding  note TBP-ASSOCIATED FACTOR 2 (TAF2); FUNCTIONS IN: metallopeptidase activity, zinc ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M1, membrane alanine aminopeptidase, N-terminal (InterPro:IPR014782); Has 6406 Blast hits to 4589 proteins in 514 species: Archae - 63; Bacteria - 731; Metazoa - 2889; Fungi - 694; Plants - 261; Viruses - 7; Other Eukaryotes - 1761 (source: NCBI BLink).  protein_id AT1G73960.1p  transcript_id AT1G73960.1  protein_id AT1G73960.1p  transcript_id AT1G73960.1  
At1g73960	chr1:027814306	0.0	C/27814306-27814433,27813724-27814057,27813488-27813633,27813309-27813375,27812641-27812840,27812402-27812555,27811952-27812036,27811750-27811841,27811513-27811638,27811320-27811373,27811159-27811227,27810494-27810591,27810037-27810384,27809841-27809928,27809463-27809588,27809321-27809377,27808674-27808753,27808548-27808590,27807945-27808031,27807664-27807753,27807227-27807285,27807054-27807144,27806857-27806962,27806523-27806706,27805173-27806373	AT1G73960.2  CDS  gene_syn F2P9.17, F2P9_17, TAF2, TBP-ASSOCIATED FACTOR 2  gene TAF2  go_function metallopeptidase activity|GO:0008237||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product TAF2 (TBP-ASSOCIATED FACTOR 2); metallopeptidase/ zinc ion binding  note TBP-ASSOCIATED FACTOR 2 (TAF2); FUNCTIONS IN: metallopeptidase activity, zinc ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M1, membrane alanine aminopeptidase, N-terminal (InterPro:IPR014782); Has 6419 Blast hits to 4600 proteins in 516 species: Archae - 65; Bacteria - 731; Metazoa - 2891; Fungi - 702; Plants - 263; Viruses - 7; Other Eukaryotes - 1760 (source: NCBI BLink).  protein_id AT1G73960.2p  transcript_id AT1G73960.2  protein_id AT1G73960.2p  transcript_id AT1G73960.2  
At1g73965	chr1:027815822	0.0	W/27815822-27816145	AT1G73965.1  CDS  gene_syn CLAVATA3/ESR-RELATED 13, CLE13  gene CLE13  function Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can partially replace CLV3 function in vivo.  go_component apoplast|GO:0048046|11457943|RCA  go_process signal transduction|GO:0007165||ISS  go_function receptor binding|GO:0005102||ISS  go_function protein binding|GO:0005515|11457943|ISS  product CLE13 (CLAVATA3/ESR-RELATED 13); protein binding / receptor binding  note CLAVATA3/ESR-RELATED 13 (CLE13); FUNCTIONS IN: protein binding, receptor binding; INVOLVED IN: signal transduction; LOCATED IN: apoplast; BEST Arabidopsis thaliana protein match is: CLE12 (CLAVATA3/ESR-RELATED 12); protein binding / receptor binding (TAIR:AT1G68795.1); Has 27 Blast hits to 27 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G73965.1p  transcript_id AT1G73965.1  protein_id AT1G73965.1p  transcript_id AT1G73965.1  
At1g73970	chr1:027817140	0.0	W/27817140-27818796,27818910-27819057,27819154-27819301,27819395-27819613,27819724-27819963	AT1G73970.1  CDS  gene_syn F2P9.16, F2P9_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 14 Blast hits to 13 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G73970.1p  transcript_id AT1G73970.1  protein_id AT1G73970.1p  transcript_id AT1G73970.1  
At1g73980	chr1:027823191	0.0	C/27823191-27823527,27822954-27823068,27822613-27822808,27822315-27822428,27822027-27822200,27821719-27821913,27821498-27821620,27821296-27821408,27821054-27821177,27820723-27820944,27820292-27820510	AT1G73980.1  CDS  gene_syn F2P9.15, F2P9_15  go_process cAMP biosynthetic process|GO:0006171||IEA  go_process metabolic process|GO:0008152||IEA  go_function adenylate cyclase activity|GO:0004016||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||IEA  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_process biosynthetic process|GO:0009058||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product phosphoribulokinase/uridine kinase family protein  note phosphoribulokinase/uridine kinase family protein; FUNCTIONS IN: adenylate cyclase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding; INVOLVED IN: biosynthetic process, cAMP biosynthetic process, metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083), Uridine kinase (InterPro:IPR000764), Adenylate cyclase (InterPro:IPR008172); BEST Arabidopsis thaliana protein match is: phosphoribulokinase/uridine kinase family protein (TAIR:AT1G26190.1); Has 2533 Blast hits to 2522 proteins in 907 species: Archae - 19; Bacteria - 1635; Metazoa - 298; Fungi - 83; Plants - 169; Viruses - 2; Other Eukaryotes - 327 (source: NCBI BLink).  protein_id AT1G73980.1p  transcript_id AT1G73980.1  protein_id AT1G73980.1p  transcript_id AT1G73980.1  
At1g73990	chr1:027824465	0.0	W/27824465-27824869,27825085-27825268,27825370-27825507,27825788-27825958,27826037-27826140,27826401-27826468,27826925-27827091,27827181-27827250,27827577-27827731,27827849-27827954,27828143-27828230,27828311-27828454,27828574-27828807	AT1G73990.1  CDS  gene_syn F2P9.14, F2P9_14, SPPA  gene SPPA  function Encodes a putative protease SppA (SppA).  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|11443110|IDA  go_component chloroplast thylakoid membrane|GO:0009535|11443110|IEP  go_component chloroplast photosystem II|GO:0030095|11443110|IEP  go_process proteolysis|GO:0006508|11443110|IDA  go_process response to light intensity|GO:0009642|11443110|IEP  go_function serine-type endopeptidase activity|GO:0004252|11443110|IDA  product SPPA; serine-type endopeptidase  note SPPA; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis, response to light intensity; LOCATED IN: chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S49, protease IV (InterPro:IPR004634), Peptidase S49 (InterPro:IPR002142), Peptidase S49, SppA (InterPro:IPR004635); Has 6584 Blast hits to 5363 proteins in 978 species: Archae - 138; Bacteria - 3548; Metazoa - 8; Fungi - 4; Plants - 23; Viruses - 34; Other Eukaryotes - 2829 (source: NCBI BLink).  protein_id AT1G73990.1p  transcript_id AT1G73990.1  protein_id AT1G73990.1p  transcript_id AT1G73990.1  
At1g74000	chr1:027831160	0.0	C/27831160-27831401,27830087-27830356,27829266-27829743	AT1G74000.1  CDS  gene_syn ATSS-3 STRICTOSIDINE SYNTHASE, F2P9.13, F2P9_13, SS3, STRICTOSIDINE SYNTHASE 3  gene SS3  function encodes a protein similar to strictosidine synthase, which is involved in the production of monoterpene indole alkaloids. This gene belongs to a family of 13 members in Arabidopsis.  go_component cell wall|GO:0005618|14595688|IDA  go_component cell wall|GO:0005618|16287169|IDA  go_process biosynthetic process|GO:0009058||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_function strictosidine synthase activity|GO:0016844|10777701|ISS  product SS3 (STRICTOSIDINE SYNTHASE 3); strictosidine synthase  note STRICTOSIDINE SYNTHASE 3 (SS3); FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: biosynthetic process; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Strictosidine synthase, conserved region (InterPro:IPR018119), Strictosidine synthase (InterPro:IPR004141), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: SS2 (STRICTOSIDINE SYNTHASE 2); strictosidine synthase (TAIR:AT1G74020.1); Has 664 Blast hits to 659 proteins in 134 species: Archae - 1; Bacteria - 124; Metazoa - 192; Fungi - 0; Plants - 277; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT1G74000.1p  transcript_id AT1G74000.1  protein_id AT1G74000.1p  transcript_id AT1G74000.1  
At1g74010	chr1:027833788	0.0	C/27833788-27834017,27833261-27833530,27832432-27832909	AT1G74010.1  CDS  gene_syn F2P9.12, F2P9_12  go_process biosynthetic process|GO:0009058||IEA  go_function strictosidine synthase activity|GO:0016844||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  product strictosidine synthase family protein  note strictosidine synthase family protein; FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: biosynthetic process; LOCATED IN: plant-type cell wall; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Strictosidine synthase, conserved region (InterPro:IPR018119), Strictosidine synthase (InterPro:IPR004141), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: SS2 (STRICTOSIDINE SYNTHASE 2); strictosidine synthase (TAIR:AT1G74020.1); Has 682 Blast hits to 677 proteins in 136 species: Archae - 1; Bacteria - 126; Metazoa - 194; Fungi - 0; Plants - 287; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT1G74010.1p  transcript_id AT1G74010.1  protein_id AT1G74010.1p  transcript_id AT1G74010.1  
At1g74020	chr1:027837042	0.0	C/27837042-27837277,27836075-27836344,27835289-27835790	AT1G74020.1  CDS  gene_syn ATSS-2 STRICTOSIDINE SYNTHASE, F2P9.11, F2P9_11, SS2, STRICTOSIDINE SYNTHASE 2  gene SS2  function Encodes AtSS-2 strictosidine synthase.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function strictosidine synthase activity|GO:0016844||IEA  go_process response to wounding|GO:0009611|16021335|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16021335|IEP  product SS2 (STRICTOSIDINE SYNTHASE 2); strictosidine synthase  note STRICTOSIDINE SYNTHASE 2 (SS2); FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: response to jasmonic acid stimulus, response to wounding; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Strictosidine synthase (InterPro:IPR004141), Strictosidine synthase, conserved region (InterPro:IPR018119), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: strictosidine synthase family protein (TAIR:AT1G74010.1); Has 685 Blast hits to 680 proteins in 137 species: Archae - 1; Bacteria - 124; Metazoa - 192; Fungi - 3; Plants - 292; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT1G74020.1p  transcript_id AT1G74020.1  protein_id AT1G74020.1p  transcript_id AT1G74020.1  
At1g74030	chr1:027841513	0.0	C/27841513-27841901,27840832-27841139,27840452-27840606,27840005-27840322,27839738-27839884,27839619-27839669,27839465-27839530	AT1G74030.1  CDS  gene_syn F2P9.10, F2P9_10  go_component phosphopyruvate hydratase complex|GO:0000015||IEA  go_component chloroplast|GO:0009507||IEA  go_process gluconeogenesis|GO:0006094||IEA  go_process glycolysis|GO:0006096||IEA  go_process anaerobic respiration|GO:0009061||IEA  go_process serine-isocitrate lyase pathway|GO:0019496||IEA  go_process aerobic glycerol catabolic process|GO:0019564||IEA  go_process non-phosphorylated glucose catabolic process|GO:0019595||IEA  go_process anaerobic glycolysis|GO:0019642||IEA  go_process glucose catabolic process to butanediol|GO:0019650||IEA  go_process acetate fermentation|GO:0019654||IEA  go_process glucose catabolic process to D-lactate and ethanol|GO:0019656||IEA  go_process glucose catabolic process to lactate and acetate|GO:0019658||IEA  go_process glyceraldehyde-3-phosphate catabolic process|GO:0019683||IEA  go_function phosphopyruvate hydratase activity|GO:0004634||IEA  go_function phosphopyruvate hydratase activity|GO:0004634||ISS  product enolase, putative  note enolase, putative; FUNCTIONS IN: phosphopyruvate hydratase activity; INVOLVED IN: in 12 processes; LOCATED IN: phosphopyruvate hydratase complex, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Enolase (InterPro:IPR000941); BEST Arabidopsis thaliana protein match is: LOS2; copper ion binding / phosphopyruvate hydratase (TAIR:AT2G36530.1); Has 9513 Blast hits to 9495 proteins in 2259 species: Archae - 189; Bacteria - 3126; Metazoa - 1415; Fungi - 220; Plants - 154; Viruses - 0; Other Eukaryotes - 4409 (source: NCBI BLink).  protein_id AT1G74030.1p  transcript_id AT1G74030.1  protein_id AT1G74030.1p  transcript_id AT1G74030.1  
At1g74040	chr1:027842258	0.0	W/27842258-27842964,27843103-27843316,27843403-27843483,27843649-27843741,27843843-27843929,27844208-27844308,27844391-27844424,27844507-27844581,27844756-27844839,27844941-27845075,27845166-27845311,27845428-27845566	AT1G74040.1  CDS  gene_syn 2-ISOPROPYLMALATE SYNTHASE 1, F2P9.9, F2P9_9, IMS1, IPMS2, ISOPROPYLMALATE SYNTHASE 2, MAML-3, SOPROPYLMALATE SYNTHASE 2  gene IMS1  function Encodes an active Arabidopsis isopropylmalate synthase IPMS2. Involved in leucine biosynthesis. Do not participate in the chain elongation of glucosinolates. Expressed constitutively throughout the plant. Loss of IPMS2 can be compensated by a second isopropylmalate synthase gene IPMS1 (At1g18500).  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process leucine biosynthetic process|GO:0009098|15155874|IGI  go_process leucine biosynthetic process|GO:0009098|17189332|IDA  go_function 2-isopropylmalate synthase activity|GO:0003852|12432038|ISS  go_function 2-isopropylmalate synthase activity|GO:0003852|15155874|IGI  go_function 2-isopropylmalate synthase activity|GO:0003852|17189332|IDA  product IMS1 (2-ISOPROPYLMALATE SYNTHASE 1); 2-isopropylmalate synthase  note 2-ISOPROPYLMALATE SYNTHASE 1 (IMS1); FUNCTIONS IN: 2-isopropylmalate synthase activity; INVOLVED IN: leucine biosynthetic process; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Alpha-isopropylmalate/homocitrate synthase, conserved site (InterPro:IPR002034), 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain (InterPro:IPR013709), Pyruvate carboxyltransferase (InterPro:IPR000891), Bacterial 2-isopropylmalate synthase (InterPro:IPR005671); BEST Arabidopsis thaliana protein match is: MAML-4 (METHYLTHIOALKYLMALATE SYNTHASE-LIKE 4); 2-isopropylmalate synthase (TAIR:AT1G18500.1); Has 12246 Blast hits to 12242 proteins in 1397 species: Archae - 327; Bacteria - 4759; Metazoa - 145; Fungi - 297; Plants - 189; Viruses - 0; Other Eukaryotes - 6529 (source: NCBI BLink).  protein_id AT1G74040.1p  transcript_id AT1G74040.1  protein_id AT1G74040.1p  transcript_id AT1G74040.1  
At1g74045	chr1:027846111	0.0	W/27846111-27846458,27846541-27846840	AT1G74045.1  CDS  gene_syn TET17, TETRASPANIN 17  gene TET17  function Member of TETRASPANIN family  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product TET17 (TETRASPANIN 17)  note TETRASPANIN 17 (TET17); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: TET16 (TETRASPANIN 16) (TAIR:AT1G18510.1); Has 47 Blast hits to 47 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G74045.1p  transcript_id AT1G74045.1  protein_id AT1G74045.1p  transcript_id AT1G74045.1  
At1g74050	chr1:027848424	0.0	C/27848424-27848680,27847889-27847995,27847591-27847772,27847256-27847411	AT1G74050.1  CDS  gene_syn F2P9.8, F2P9_8  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component intracellular|GO:0005622||ISS  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L6 (RPL6C)  note 60S ribosomal protein L6 (RPL6C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, ribosome, intracellular, plasma membrane, membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L6, N-terminal (InterPro:IPR005568), Ribosomal protein L6E (InterPro:IPR000915); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L6 (RPL6B) (TAIR:AT1G74060.1); Has 552 Blast hits to 551 proteins in 201 species: Archae - 13; Bacteria - 0; Metazoa - 258; Fungi - 97; Plants - 77; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT1G74050.1p  transcript_id AT1G74050.1  protein_id AT1G74050.1p  transcript_id AT1G74050.1  
At1g74055	chr1:027849279	0.0	W/27849279-27849713	AT1G74055.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; Has 13 Blast hits to 13 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G74055.1p  transcript_id AT1G74055.1  protein_id AT1G74055.1p  transcript_id AT1G74055.1  
At1g74060	chr1:027851043	0.0	C/27851043-27851299,27850640-27850746,27850329-27850510,27850033-27850188	AT1G74060.1  CDS  gene_syn F2P9.7, F2P9_7  go_component nucleolus|GO:0005730|15496452|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component intracellular|GO:0005622||ISS  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L6 (RPL6B)  note 60S ribosomal protein L6 (RPL6B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, nucleolus, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein L6, N-terminal (InterPro:IPR005568), Ribosomal protein L6E (InterPro:IPR000915); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L6 (RPL6C) (TAIR:AT1G74050.1); Has 551 Blast hits to 550 proteins in 201 species: Archae - 13; Bacteria - 0; Metazoa - 257; Fungi - 97; Plants - 77; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT1G74060.1p  transcript_id AT1G74060.1  protein_id AT1G74060.1p  transcript_id AT1G74060.1  
At1g74070	chr1:027852598	0.0	C/27852598-27852861,27851944-27852518,27851749-27851863	AT1G74070.1  CDS  gene_syn F2P9.6, F2P9_6  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||IEA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|ISS  go_process protein folding|GO:0006457||ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein  note peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerase (TAIR:AT5G35100.1); Has 2382 Blast hits to 2382 proteins in 343 species: Archae - 0; Bacteria - 64; Metazoa - 1168; Fungi - 403; Plants - 432; Viruses - 0; Other Eukaryotes - 315 (source: NCBI BLink).  protein_id AT1G74070.1p  transcript_id AT1G74070.1  protein_id AT1G74070.1p  transcript_id AT1G74070.1  
At1g74080	chr1:027855972	0.0	W/27855972-27856104,27856222-27856351,27856694-27857432	AT1G74080.1  CDS  gene_syn ATMYB122, F2P9.5, F2P9_5, MYB DOMAIN PROTEIN 122, MYB122  gene MYB122  function Encodes a putative transcription factor, member of the R2R3 factor gene family (MYB122).  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product MYB122 (MYB DOMAIN PROTEIN 122); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 122 (MYB122); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB51 (MYB DOMAIN PROTEIN 51); DNA binding / transcription factor (TAIR:AT1G18570.1); Has 6313 Blast hits to 5812 proteins in 357 species: Archae - 0; Bacteria - 2; Metazoa - 683; Fungi - 307; Plants - 3736; Viruses - 3; Other Eukaryotes - 1582 (source: NCBI BLink).  protein_id AT1G74080.1p  transcript_id AT1G74080.1  protein_id AT1G74080.1p  transcript_id AT1G74080.1  
At1g74088	chr1:027861129	0.0	W/27861129-27862753	AT1G74088.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G74088.1  
At1g74090	chr1:027863003	0.0	W/27863003-27864055	AT1G74090.1  CDS  gene_syn ARABIDOPSIS SULFOTRANSFERASE 5B, ATSOT18, ATST5B, DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18, F2P9.4, F2P9_4, SOT18  gene SOT18  function encodes a desulfoglucosinolate sulfotransferase, involved in the final step of glucosinolate core structure biosynthesis. Has a broad-substrate specificity with preference with methionine-derived desulfoglucosinolates.  go_component cellular_component|GO:0005575||ND  go_process glucosinolate biosynthetic process|GO:0019761|15358770|IDA  go_process glucosinolate biosynthetic process|GO:0019761|19077143|IDA  go_function sulfotransferase activity|GO:0008146||ISS  go_function desulfoglucosinolate sulfotransferase activity|GO:0047364|15358770|IDA  go_function 3-methylthiopropyl-desulfoglucosinolate sulfotransferase activity|GO:0080066|19077143|IDA  go_function 4-methylthiobutyl-desulfoglucosinolate sulfotransferase activity|GO:0080067|19077143|IDA  go_function 5-methylthiopentyl-desulfoglucosinolate sulfotransferase activity|GO:0080068|19077143|IDA  go_function 7-methylthioheptyl-desulfoglucosinolate sulfotransferase activity|GO:0080069|19077143|IDA  go_function 8-methylthiooctyl-desulfoglucosinolate sulfotransferase activity|GO:0080070|19077143|IDA  go_function indol-3-yl-methyl-desulfoglucosinolate sulfotransferase activity|GO:0080071|19077143|IDA  product SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18); 3-methylthiopropyl-desulfoglucosinolate sulfotransferase/ 4-methylthiobutyl-desulfoglucosinolate sulfotransferase/ 5-methylthiopentyl-desulfoglucosinolate sulfotransferase/ 7-methylthioheptyl-desulfoglucosinolate sulfotransferase/ 8-methylthiooctyl-desulfoglucosinolate sulfotransferase/ desulfoglucosinolate sulfotransferase/ indol-3-yl-methyl-desulfoglucosinolate sulfotransferase/ sulfotransferase  note DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18 (SOT18); FUNCTIONS IN: in 8 functions; INVOLVED IN: glucosinolate biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sulfotransferase (InterPro:IPR000863); BEST Arabidopsis thaliana protein match is: SOT17 (SULFOTRANSFERASE 17); desulfoglucosinolate sulfotransferase/ sulfotransferase (TAIR:AT1G18590.1); Has 2187 Blast hits to 2150 proteins in 138 species: Archae - 0; Bacteria - 142; Metazoa - 1453; Fungi - 1; Plants - 301; Viruses - 0; Other Eukaryotes - 290 (source: NCBI BLink).  protein_id AT1G74090.1p  transcript_id AT1G74090.1  protein_id AT1G74090.1p  transcript_id AT1G74090.1  
At1g74100	chr1:027864489	0.0	C/27864489-27865505	AT1G74100.1  CDS  gene_syn ARABIDOPSIS SULFOTRANSFERASE 5A, ATSOT16, ATST5A, CORI-7, CORONATINE INDUCED-7, F2P9.3, F2P9_3, SOT16, SULFOTRANSFERASE 16  gene SOT16  function encodes a desulfoglucosinolate sulfotransferase, involved in the final step of glucosinolate core structure biosynthesis. Has a broad-substrate specificity with different desulfoglucosinolates, the best substrate is indole-3-methyl-dsGS, followed by benzyl-dsGS. Expression was induced by wounding, jasmonate and ethylene stimulates.  go_component cellular_component|GO:0005575||ND  go_process glucosinolate biosynthetic process|GO:0019761|15358770|IDA  go_process response to jasmonic acid stimulus during jasmonic acid and ethylene-dependent systemic resistance|GO:0032260|15358770|IEP  go_function sulfotransferase activity|GO:0008146||ISS  go_function desulfoglucosinolate sulfotransferase activity|GO:0047364|15358770|IDA  product SOT16 (SULFOTRANSFERASE 16); desulfoglucosinolate sulfotransferase/ sulfotransferase  note SULFOTRANSFERASE 16 (SOT16); FUNCTIONS IN: sulfotransferase activity, desulfoglucosinolate sulfotransferase activity; INVOLVED IN: glucosinolate biosynthetic process, response to jasmonic acid stimulus during jasmonic acid and ethylene-dependent systemic resistance; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sulfotransferase (InterPro:IPR000863); BEST Arabidopsis thaliana protein match is: SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18); 3-methylthiopropyl-desulfoglucosinolate sulfotransferase/ 4-methylthiobutyl-desulfoglucosinolate sulfotransferase/ 5-methylthiopentyl-desulfoglucosinolate sulfotransferase/ 7-methylthioheptyl-desulfoglucosinolate sulfotransferase/ 8-methylthiooctyl-desulfoglucosinolate sulfotransferase/ desulfoglucosinolate sulfotransferase/ indol-3-yl-methyl-desulfoglucosinolate sulfotransferase/ sulfotransferase (TAIR:AT1G74090.1); Has 2318 Blast hits to 2287 proteins in 138 species: Archae - 0; Bacteria - 150; Metazoa - 1447; Fungi - 0; Plants - 300; Viruses - 0; Other Eukaryotes - 421 (source: NCBI BLink).  protein_id AT1G74100.1p  transcript_id AT1G74100.1  protein_id AT1G74100.1p  transcript_id AT1G74100.1  
At1g74110	chr1:027867367	0.0	C/27867367-27868368,27866667-27867278	AT1G74110.1  CDS  gene_syn CYP78A10, F2P9.2, F2P9_2  gene CYP78A10  function member of CYP78A  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component cellular_component|GO:0005575||ND  go_function oxygen binding|GO:0019825||ISS  product CYP78A10; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP78A10; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP78A5; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G13710.1); Has 22424 Blast hits to 22341 proteins in 1198 species: Archae - 19; Bacteria - 1676; Metazoa - 10107; Fungi - 4285; Plants - 5609; Viruses - 3; Other Eukaryotes - 725 (source: NCBI BLink).  protein_id AT1G74110.1p  transcript_id AT1G74110.1  protein_id AT1G74110.1p  transcript_id AT1G74110.1  
At1g74120	chr1:027871923	0.0	C/27871923-27873260	AT1G74120.1  CDS  gene_syn F9E11.3, F9E11_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial transcription termination factor-related / mTERF-related  note mitochondrial transcription termination factor-related / mTERF-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, embryo, seed; EXPRESSED DURING: D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: PTAC15 (PLASTID TRANSCRIPTIONALLY ACTIVE15) (TAIR:AT5G54180.1); Has 452 Blast hits to 364 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 0; Plants - 422; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G74120.1p  transcript_id AT1G74120.1  protein_id AT1G74120.1p  transcript_id AT1G74120.1  
At1g74130	chr1:027873687	0.0	W/27873687-27874006,27874539-27874659,27874740-27874859,27875050-27875160,27875320-27875370,27875484-27875585,27875667-27875708,27875796-27875897	AT1G74130.1  CDS  gene_syn F9E11.2, F9E11_2  go_component integral to membrane|GO:0016021||IEA  product rhomboid family protein  note rhomboid family protein; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74140.5); Has 891 Blast hits to 891 proteins in 302 species: Archae - 28; Bacteria - 492; Metazoa - 10; Fungi - 59; Plants - 43; Viruses - 0; Other Eukaryotes - 259 (source: NCBI BLink).  protein_id AT1G74130.1p  transcript_id AT1G74130.1  protein_id AT1G74130.1p  transcript_id AT1G74130.1  
At1g74130	chr1:027873687	0.0	W/27873687-27874006,27874539-27874659,27874740-27874859,27875050-27875160,27875320-27875370,27875484-27875585,27875667-27875710,27875796-27875817	AT1G74130.2  CDS  gene_syn F9E11.2, F9E11_2  go_component integral to membrane|GO:0016021||IEA  product rhomboid family protein  note rhomboid family protein; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74140.5); Has 710 Blast hits to 710 proteins in 231 species: Archae - 26; Bacteria - 353; Metazoa - 10; Fungi - 57; Plants - 43; Viruses - 0; Other Eukaryotes - 221 (source: NCBI BLink).  protein_id AT1G74130.2p  transcript_id AT1G74130.2  protein_id AT1G74130.2p  transcript_id AT1G74130.2  
At1g74140	chr1:027876928	0.0	W/27876928-27877265,27877804-27877846,27877996-27878115,27878391-27878498,27878974-27879030,27879178-27879270,27879360-27879401,27879489-27879584	AT1G74140.2  CDS  gene_syn F9E11.9, F9E11_9  go_component chloroplast|GO:0009507||IEA  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: rhomboid family protein (TAIR:AT1G74130.1); Has 388 Blast hits to 388 proteins in 139 species: Archae - 2; Bacteria - 244; Metazoa - 0; Fungi - 2; Plants - 36; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT1G74140.2p  transcript_id AT1G74140.2  protein_id AT1G74140.2p  transcript_id AT1G74140.2  
At1g74140	chr1:027876928	0.0	W/27876928-27877265,27877804-27877846,27877996-27878115,27878391-27878498,27878974-27879030,27879178-27879279,27879360-27879401,27879489-27879584	AT1G74140.3  CDS  gene_syn F9E11.9, F9E11_9  go_component chloroplast|GO:0009507||IEA  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: rhomboid family protein (TAIR:AT1G74130.1); Has 428 Blast hits to 428 proteins in 155 species: Archae - 4; Bacteria - 272; Metazoa - 0; Fungi - 4; Plants - 36; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).  protein_id AT1G74140.3p  transcript_id AT1G74140.3  protein_id AT1G74140.3p  transcript_id AT1G74140.3  
At1g74140	chr1:027876928	0.0	W/27876928-27877265,27877804-27877903,27877996-27878115,27878391-27878498,27878974-27879030,27879178-27879270,27879360-27879401,27879489-27879584	AT1G74140.1  CDS  gene_syn F9E11.9, F9E11_9  go_component chloroplast|GO:0009507||IEA  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: rhomboid family protein (TAIR:AT1G74130.1); Has 484 Blast hits to 484 proteins in 189 species: Archae - 2; Bacteria - 267; Metazoa - 30; Fungi - 47; Plants - 36; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).  protein_id AT1G74140.1p  transcript_id AT1G74140.1  protein_id AT1G74140.1p  transcript_id AT1G74140.1  
At1g74140	chr1:027876928	0.0	W/27876928-27877265,27877804-27877903,27877996-27878115,27878391-27878498,27878974-27879030,27879178-27879279,27879360-27879401,27879489-27879584	AT1G74140.5  CDS  gene_syn F9E11.9, F9E11_9  go_component chloroplast|GO:0009507||IEA  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: rhomboid family protein (TAIR:AT1G74130.1); Has 536 Blast hits to 536 proteins in 206 species: Archae - 2; Bacteria - 298; Metazoa - 30; Fungi - 50; Plants - 36; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).  protein_id AT1G74140.5p  transcript_id AT1G74140.5  protein_id AT1G74140.5p  transcript_id AT1G74140.5  
At1g74140	chr1:027876928	0.0	W/27876928-27877265,27877804-27877903,27877996-27878115,27878391-27878498,27878974-27879030,27879178-27879279,27879489-27879584	AT1G74140.4  CDS  gene_syn F9E11.9, F9E11_9  go_component chloroplast|GO:0009507||IEA  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: rhomboid family protein (TAIR:AT1G74130.1); Has 394 Blast hits to 394 proteins in 153 species: Archae - 6; Bacteria - 196; Metazoa - 30; Fungi - 47; Plants - 36; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT1G74140.4p  transcript_id AT1G74140.4  protein_id AT1G74140.4p  transcript_id AT1G74140.4  
At1g74150	chr1:027880528	0.0	W/27880528-27880699,27881069-27881218,27881357-27881524,27881768-27881920,27881998-27882150,27882243-27882407,27882542-27882658,27882743-27882938,27883028-27883295,27883377-27883496	AT1G74150.1  CDS  gene_syn F9E11.8, F9E11_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G18610.1); Has 8525 Blast hits to 4249 proteins in 295 species: Archae - 10; Bacteria - 313; Metazoa - 3989; Fungi - 859; Plants - 1220; Viruses - 19; Other Eukaryotes - 2115 (source: NCBI BLink).  protein_id AT1G74150.1p  transcript_id AT1G74150.1  protein_id AT1G74150.1p  transcript_id AT1G74150.1  
At1g74160	chr1:027887164	0.0	W/27887164-27887299,27887802-27887872,27887956-27889848,27889942-27890077,27890310-27891151	AT1G74160.1  CDS  gene_syn F9E11.1, F9E11_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G18620.2); Has 3102 Blast hits to 1900 proteins in 230 species: Archae - 0; Bacteria - 163; Metazoa - 1295; Fungi - 275; Plants - 223; Viruses - 32; Other Eukaryotes - 1114 (source: NCBI BLink).  protein_id AT1G74160.1p  transcript_id AT1G74160.1  protein_id AT1G74160.1p  transcript_id AT1G74160.1  
At1g74170	chr1:027895252	0.0	C/27895252-27895441,27894757-27894912,27894522-27894596,27894246-27894401,27894085-27894159,27893862-27893966,27891555-27893800	AT1G74170.1  CDS  gene_syn AtRLP13, F9E11.7, F9E11_7, Receptor Like Protein 13  gene AtRLP13  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product AtRLP13 (Receptor Like Protein 13); protein binding  note Receptor Like Protein 13 (AtRLP13); FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP15 (Receptor Like Protein 15); protein binding (TAIR:AT1G74190.1); Has 80445 Blast hits to 19278 proteins in 787 species: Archae - 52; Bacteria - 4997; Metazoa - 24339; Fungi - 930; Plants - 44285; Viruses - 43; Other Eukaryotes - 5799 (source: NCBI BLink).  protein_id AT1G74170.1p  transcript_id AT1G74170.1  protein_id AT1G74170.1p  transcript_id AT1G74170.1  
At1g74180	chr1:027900521	0.0	C/27900521-27900908,27900082-27900237,27899913-27899981,27899692-27899766,27899519-27899593,27897197-27899364	AT1G74180.1  CDS  gene_syn AtRLP14, F9E11.6, F9E11_6, Receptor Like Protein 14  gene AtRLP14  go_component chloroplast|GO:0009507|15028209|IDA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product AtRLP14 (Receptor Like Protein 14); protein binding  note Receptor Like Protein 14 (AtRLP14); FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210); BEST Arabidopsis thaliana protein match is: AtRLP21 (Receptor Like Protein 21); protein binding (TAIR:AT2G25470.1); Has 71707 Blast hits to 19270 proteins in 799 species: Archae - 57; Bacteria - 4890; Metazoa - 21714; Fungi - 859; Plants - 38643; Viruses - 22; Other Eukaryotes - 5522 (source: NCBI BLink).  protein_id AT1G74180.1p  transcript_id AT1G74180.1  protein_id AT1G74180.1p  transcript_id AT1G74180.1  
At1g74190	chr1:027905789	0.0	C/27905789-27906158,27905310-27905465,27905083-27905157,27904823-27904936,27902590-27904772	AT1G74190.1  CDS  gene_syn AtRLP15, F9E11.4, Receptor Like Protein 15  gene AtRLP15  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product AtRLP15 (Receptor Like Protein 15); protein binding  note Receptor Like Protein 15 (AtRLP15); FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP13 (Receptor Like Protein 13); protein binding (TAIR:AT1G74170.1); Has 81796 Blast hits to 20871 proteins in 850 species: Archae - 47; Bacteria - 5727; Metazoa - 25847; Fungi - 971; Plants - 42930; Viruses - 38; Other Eukaryotes - 6236 (source: NCBI BLink).  protein_id AT1G74190.1p  transcript_id AT1G74190.1  protein_id AT1G74190.1p  transcript_id AT1G74190.1  
At1g74200	chr1:027907739	0.0	C/27907739-27908647	AT1G74200.1  CDS  gene_syn AtRLP16, F1O17.13, F1O17_13, Receptor Like Protein 16  gene AtRLP16  go_component cellular_component|GO:0005575||ND  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product AtRLP16 (Receptor Like Protein 16); protein binding  note Receptor Like Protein 16 (AtRLP16); FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP13 (Receptor Like Protein 13); protein binding (TAIR:AT1G74170.1); Has 49719 Blast hits to 15115 proteins in 644 species: Archae - 22; Bacteria - 1514; Metazoa - 12093; Fungi - 386; Plants - 33059; Viruses - 0; Other Eukaryotes - 2645 (source: NCBI BLink).  protein_id AT1G74200.1p  transcript_id AT1G74200.1  protein_id AT1G74200.1p  transcript_id AT1G74200.1  
At1g74210	chr1:027910396	0.0	W/27910396-27910408,27910866-27911047,27911136-27911319,27911523-27911597,27911704-27911813,27911990-27912208,27912304-27912459,27912546-27912785	AT1G74210.1  CDS  gene_syn F1O17.12, F1O17_12  go_component vacuole|GO:0005773|15539469|IDA  go_process glycerol metabolic process|GO:0006071||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function phosphoric diester hydrolase activity|GO:0008081||IEA  go_function glycerophosphodiester phosphodiesterase activity|GO:0008889||IEA  go_process glycerol metabolic process|GO:0006071||ISS  go_function glycerophosphodiester phosphodiesterase activity|GO:0008889||ISS  product glycerophosphoryl diester phosphodiesterase family protein  note glycerophosphoryl diester phosphodiesterase family protein; FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: glycerophosphoryl diester phosphodiesterase family protein (TAIR:AT5G08030.1); Has 3890 Blast hits to 3808 proteins in 897 species: Archae - 32; Bacteria - 2537; Metazoa - 213; Fungi - 82; Plants - 199; Viruses - 4; Other Eukaryotes - 823 (source: NCBI BLink).  protein_id AT1G74210.1p  transcript_id AT1G74210.1  protein_id AT1G74210.1p  transcript_id AT1G74210.1  
At1g74220	chr1:027913416	0.0	C/27913416-27914134,27913099-27913330	AT1G74220.1  CDS  gene_syn F1O17.11, F1O17_11  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G03630.2); Has 340 Blast hits to 295 proteins in 69 species: Archae - 0; Bacteria - 16; Metazoa - 101; Fungi - 52; Plants - 33; Viruses - 2; Other Eukaryotes - 136 (source: NCBI BLink).  protein_id AT1G74220.1p  transcript_id AT1G74220.1  protein_id AT1G74220.1p  transcript_id AT1G74220.1  
At1g74230	chr1:027915346	0.0	W/27915346-27915463,27915546-27915614,27915735-27915838,27916279-27916857	AT1G74230.1  CDS  gene_syn F1O17.10, F1O17_10, GR-RBP5, glycine-rich RNA-binding protein 5  gene GR-RBP5  function encodes a glycine-rich RNA binding protein.  go_component mitochondrion|GO:0005739|17137349|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_function ATP binding|GO:0005524|17137349|IDA  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product GR-RBP5 (glycine-rich RNA-binding protein 5); ATP binding / RNA binding  note glycine-rich RNA-binding protein 5 (GR-RBP5); FUNCTIONS IN: RNA binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: GR-RBP3 (glycine-rich RNA-binding protein 3); ATP binding / RNA binding (TAIR:AT5G61030.1); Has 107174 Blast hits to 44979 proteins in 1801 species: Archae - 113; Bacteria - 26087; Metazoa - 40080; Fungi - 9113; Plants - 11091; Viruses - 1000; Other Eukaryotes - 19690 (source: NCBI BLink).  protein_id AT1G74230.1p  transcript_id AT1G74230.1  protein_id AT1G74230.1p  transcript_id AT1G74230.1  
At1g74240	chr1:027917437	0.0	W/27917437-27917530,27917793-27917908,27918036-27918093,27918286-27918435,27918923-27919133,27919241-27919286,27919381-27919492,27919575-27919647,27919753-27919987	AT1G74240.1  CDS  gene_syn F1O17.9, F1O17_9  go_component mitochondrial inner membrane|GO:0005743||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function binding|GO:0005488||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: SAMC1 (S-ADENOSYLMETHIONINE CARRIER 1); S-adenosylmethionine transmembrane transporter/ binding (TAIR:AT4G39460.1); Has 19112 Blast hits to 10154 proteins in 360 species: Archae - 0; Bacteria - 0; Metazoa - 9866; Fungi - 4980; Plants - 2508; Viruses - 0; Other Eukaryotes - 1758 (source: NCBI BLink).  protein_id AT1G74240.1p  transcript_id AT1G74240.1  protein_id AT1G74240.1p  transcript_id AT1G74240.1  
At1g74250	chr1:027920328	0.0	W/27920328-27922100,27922186-27922247,27922357-27922414	AT1G74250.1  CDS  gene_syn F1O17.8, F1O17_8  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding, zinc ion binding, nucleic acid binding; INVOLVED IN: protein folding; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Zinc finger, U1-type (InterPro:IPR003604), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Zinc finger, C2H2-type (InterPro:IPR007087), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein / cell division protein-related (TAIR:AT3G11450.1); Has 79758 Blast hits to 52516 proteins in 2391 species: Archae - 341; Bacteria - 9787; Metazoa - 30392; Fungi - 7478; Plants - 3062; Viruses - 414; Other Eukaryotes - 28284 (source: NCBI BLink).  protein_id AT1G74250.1p  transcript_id AT1G74250.1  protein_id AT1G74250.1p  transcript_id AT1G74250.1  
At1g74260	chr1:027927723	0.0	C/27927723-27927764,27927044-27927464,27926392-27926960,27923916-27926292,27923005-27923819	AT1G74260.1  CDS  gene_syn F1O17.7, F1O17_7, PUR4, purine biosynthesis 4  gene PUR4  function Encodes formylglycinamidine ribonucleotide synthase an enzyme involved in de novo purine biosynthesis. PUR4 is localizes to the chloroplast and mitochondria. Loss of PUR4 function affects male but not female gametophyte development.  go_component mitochondrion|GO:0005739|17137349|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|18441219|IDA  go_component chloroplast|GO:0009507|18441219|IDA  go_process microgametogenesis|GO:0055046|18441219|IMP  go_function catalytic activity|GO:0003824||ISS  go_function phosphoribosylformylglycinamidine synthase activity|GO:0004642|18441219|TAS  product PUR4 (purine biosynthesis 4); ATP binding / catalytic/ phosphoribosylformylglycinamidine synthase  note purine biosynthesis 4 (PUR4); FUNCTIONS IN: phosphoribosylformylglycinamidine synthase activity, catalytic activity, ATP binding; INVOLVED IN: microgametogenesis; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PurM, N-terminal-like (InterPro:IPR016188), AIR synthase related protein (InterPro:IPR000728), Phosphoribosylformylglycinamidine synthase, eukaryotes and proteobacteria (InterPro:IPR010073), AIR synthase related protein, C-terminal (InterPro:IPR010918), Glutamine amidotransferase type 1 (InterPro:IPR017926); Has 10158 Blast hits to 10008 proteins in 1435 species: Archae - 274; Bacteria - 3654; Metazoa - 109; Fungi - 90; Plants - 37; Viruses - 87; Other Eukaryotes - 5907 (source: NCBI BLink).  protein_id AT1G74260.1p  transcript_id AT1G74260.1  protein_id AT1G74260.1p  transcript_id AT1G74260.1  
At1g74270	chr1:027929435	0.0	C/27929435-27929466,27929170-27929205,27928551-27928779,27928415-27928456	AT1G74270.1  CDS  gene_syn F1O17.6, F1O17_6  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L35a (RPL35aC)  note 60S ribosomal protein L35a (RPL35aC); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, ribosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L35Ae (InterPro:IPR001780), Ribosomal protein L35Ae, conserved site (InterPro:IPR018266); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L35a (RPL35aA) (TAIR:AT1G07070.1); Has 541 Blast hits to 541 proteins in 186 species: Archae - 21; Bacteria - 0; Metazoa - 228; Fungi - 97; Plants - 93; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).  protein_id AT1G74270.1p  transcript_id AT1G74270.1  protein_id AT1G74270.1p  transcript_id AT1G74270.1  
At1g74280	chr1:027929758	0.0	W/27929758-27930078,27930329-27931126	AT1G74280.1  CDS  gene_syn F1O17.5, F1O17_5  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: esterase/lipase/thioesterase family protein (TAIR:AT1G74290.1); Has 506 Blast hits to 505 proteins in 118 species: Archae - 4; Bacteria - 217; Metazoa - 4; Fungi - 28; Plants - 184; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT1G74280.1p  transcript_id AT1G74280.1  protein_id AT1G74280.1p  transcript_id AT1G74280.1  
At1g74290	chr1:027931836	0.0	W/27931836-27932156,27932408-27932604,27933671-27934268	AT1G74290.1  CDS  gene_syn F1O17.4, F1O17_4  go_function catalytic activity|GO:0003824||ISS  product esterase/lipase/thioesterase family protein  note esterase/lipase/thioesterase family protein; FUNCTIONS IN: catalytic activity; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT1G74280.1); Has 377 Blast hits to 376 proteins in 79 species: Archae - 2; Bacteria - 122; Metazoa - 0; Fungi - 25; Plants - 183; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT1G74290.1p  transcript_id AT1G74290.1  protein_id AT1G74290.1p  transcript_id AT1G74290.1  
At1g74300	chr1:027935368	0.0	W/27935368-27935637,27935704-27936474	AT1G74300.1  CDS  gene_syn F1O17.3, F1O17_3  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product esterase/lipase/thioesterase family protein  note esterase/lipase/thioesterase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT1G74280.1); Has 649 Blast hits to 648 proteins in 156 species: Archae - 8; Bacteria - 303; Metazoa - 25; Fungi - 27; Plants - 184; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).  protein_id AT1G74300.1p  transcript_id AT1G74300.1  protein_id AT1G74300.1p  transcript_id AT1G74300.1  
At1g74310	chr1:027938713	0.0	C/27938713-27939862,27938447-27938628,27937681-27938306,27937119-27937596,27936715-27937014	AT1G74310.1  CDS  gene_syn ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101, ATHSP101, F1O17.2, F1O17_2, HEAT SHOCK PROTEIN 101, HEAT SHOCK PROTEIN ATHSP101, HOT1, HSP101  gene ATHSP101  function Encodes ClpB1, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family. Involved in refolding of proteins which form aggregates under heat stress. Also known as AtHsp101. AtHsp101 is a cytosolic heat shock protein required for acclimation to high temperature.  go_function nucleotide binding|GO:0000166||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process response to heat|GO:0009408|10760305|IGI  go_process response to heat|GO:0009408|15923322|IMP  go_process response to heat|GO:0009408|17059409|IEP  go_process response to heat|GO:0009408|18047473|IMP  go_process response to heat|GO:0009408|7866032|IEP  go_process response to high light intensity|GO:0009644|17059409|IEP  go_process response to hydrogen peroxide|GO:0042542|17059409|IEP  go_process protein unfolding|GO:0043335|15659638|IMP  go_function ATP binding|GO:0005524||ISS  go_function ATPase activity|GO:0016887||ISS  product ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding  note ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101 (ATHSP101); FUNCTIONS IN: protein binding, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat, protein unfolding; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase associated with various cellular activities, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: CLPB2; ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding (TAIR:AT4G14670.1); Has 18510 Blast hits to 16328 proteins in 1794 species: Archae - 217; Bacteria - 9724; Metazoa - 970; Fungi - 287; Plants - 376; Viruses - 13; Other Eukaryotes - 6923 (source: NCBI BLink).  protein_id AT1G74310.1p  transcript_id AT1G74310.1  protein_id AT1G74310.1p  transcript_id AT1G74310.1  
At1g74320	chr1:027941192	0.0	W/27941192-27941551,27941707-27941828,27941960-27942155,27942262-27942379,27942470-27942517,27942612-27942712,27942796-27942903	AT1G74320.1  CDS  gene_syn F1O17.1, F1O17_1  function encodes a choline kinase, whose expression is induced by high salt and mannitol.  go_component cellular_component|GO:0005575||ND  go_process response to osmotic stress|GO:0006970|15147879|IEP  go_process response to salt stress|GO:0009651|15147879|IEP  go_function choline kinase activity|GO:0004103||ISS  product choline kinase, putative  note choline kinase, putative; FUNCTIONS IN: choline kinase activity; INVOLVED IN: response to salt stress, response to osmotic stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Choline kinase, N-terminal (InterPro:IPR007521), Choline/ethanolamine kinase (InterPro:IPR002573), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: choline kinase, putative (TAIR:AT4G09760.2); Has 1089 Blast hits to 1039 proteins in 237 species: Archae - 0; Bacteria - 210; Metazoa - 386; Fungi - 159; Plants - 83; Viruses - 0; Other Eukaryotes - 251 (source: NCBI BLink).  protein_id AT1G74320.1p  transcript_id AT1G74320.1  protein_id AT1G74320.1p  transcript_id AT1G74320.1  
At1g74330	chr1:027946732	0.0	C/27946732-27947109,27946359-27946643,27945938-27946261,27945588-27945815,27945360-27945457,27945071-27945155,27944436-27944966,27943790-27943913,27943535-27943554	AT1G74330.2  CDS  gene_syn F1M20.1, F1M20_1  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function ATP binding|GO:0005524||ISS  product ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: IBS1 (IMPAIRED IN BABA-INDUCED STERILITY 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT1G18670.1).  protein_id AT1G74330.2p  transcript_id AT1G74330.2  protein_id AT1G74330.2p  transcript_id AT1G74330.2  
At1g74330	chr1:027946732	0.0	C/27946732-27947109,27946359-27946643,27945938-27946261,27945588-27945815,27945360-27945457,27945071-27945155,27944436-27944966,27943790-27943913,27943618-27943664	AT1G74330.1  CDS  gene_syn F1M20.1, F1M20_1  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function ATP binding|GO:0005524||ISS  product ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: IBS1 (IMPAIRED IN BABA-INDUCED STERILITY 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT1G18670.1); Has 89542 Blast hits to 88420 proteins in 3019 species: Archae - 43; Bacteria - 7444; Metazoa - 39651; Fungi - 8307; Plants - 17158; Viruses - 416; Other Eukaryotes - 16523 (source: NCBI BLink).  protein_id AT1G74330.1p  transcript_id AT1G74330.1  protein_id AT1G74330.1p  transcript_id AT1G74330.1  
At1g74340	chr1:027948565	0.0	C/27948565-27948654,27948288-27948440	AT1G74340.1  CDS  gene_syn F1M20.2, F1M20_2  go_component endomembrane system|GO:0012505||IEA  go_component integral to endoplasmic reticulum membrane|GO:0030176||IEA  go_process macromolecule biosynthetic process|GO:0009059||IEA  go_function molecular_function|GO:0003674||ND  product dolichol phosphate-mannose biosynthesis regulatory protein-related  note dolichol phosphate-mannose biosynthesis regulatory protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: macromolecule biosynthetic process; LOCATED IN: integral to endoplasmic reticulum membrane, endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dolichol phosphate-mannose biosynthesis regulatory (InterPro:IPR009914); Has 167 Blast hits to 167 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 52; Plants - 11; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT1G74340.1p  transcript_id AT1G74340.1  protein_id AT1G74340.1p  transcript_id AT1G74340.1  
At1g74350	chr1:027949022	0.0	C/27949022-27951283	AT1G74350.1  CDS  gene_syn F1M20.3, F1M20_3  go_process RNA-dependent DNA replication|GO:0006278||IEA  go_process RNA splicing|GO:0008380||IEA  go_function RNA binding|GO:0003723||IEA  go_function RNA-directed DNA polymerase activity|GO:0003964||IEA  go_component cellular_component|GO:0005575||ND  go_process RNA-dependent DNA replication|GO:0006278||ISS  go_process RNA splicing|GO:0008380||ISS  go_function RNA binding|GO:0003723||ISS  go_function RNA-directed DNA polymerase activity|GO:0003964||ISS  product intron maturase, type II family protein  note intron maturase, type II family protein; FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity; INVOLVED IN: RNA-dependent DNA replication, RNA splicing; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, shoot, stem, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Intron maturase, type II (InterPro:IPR000442), RNA-directed DNA polymerase (reverse transcriptase) (InterPro:IPR000477); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04050.1); Has 2451 Blast hits to 2389 proteins in 885 species: Archae - 10; Bacteria - 1540; Metazoa - 5; Fungi - 34; Plants - 759; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).  protein_id AT1G74350.1p  transcript_id AT1G74350.1  protein_id AT1G74350.1p  transcript_id AT1G74350.1  
At1g74360	chr1:027954299	0.0	W/27954299-27954386,27954679-27957911	AT1G74360.1  CDS  gene_syn F1M20.4, F1M20_4  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591); BEST Arabidopsis thaliana protein match is: BRL2 (BRI1-LIKE 2); ATP binding / protein serine/threonine kinase/ transmembrane receptor protein serine/threonine kinase (TAIR:AT2G01950.1); Has 148166 Blast hits to 100126 proteins in 3544 species: Archae - 103; Bacteria - 11785; Metazoa - 57552; Fungi - 7335; Plants - 51455; Viruses - 406; Other Eukaryotes - 19530 (source: NCBI BLink).  protein_id AT1G74360.1p  transcript_id AT1G74360.1  protein_id AT1G74360.1p  transcript_id AT1G74360.1  
At1g74370	chr1:027958200	0.0	C/27958200-27958985	AT1G74370.1  CDS  gene_syn F1M20.5, F1M20_5  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: ubiquitin-protein ligase (TAIR:AT3G29270.2); Has 236 Blast hits to 236 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 137; Fungi - 0; Plants - 84; Viruses - 3; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G74370.1p  transcript_id AT1G74370.1  protein_id AT1G74370.1p  transcript_id AT1G74370.1  
At1g74380	chr1:027959848	0.0	W/27959848-27961221	AT1G74380.1  CDS  gene_syn F1M20.6, F1M20_6, XXT5, XYLOGLUCAN XYLOSYLTRANSFERASE 5  gene XXT5  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component Golgi membrane|GO:0000139|18557833|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process root hair elongation|GO:0048767|18557833|IMP  go_function transferase activity|GO:0016740||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function xyloglucan 6-xylosyltransferase activity|GO:0033843|18557833|IMP  product XXT5 (XYLOGLUCAN XYLOSYLTRANSFERASE 5); transferase/ transferase, transferring glycosyl groups / xyloglucan 6-xylosyltransferase  note XYLOGLUCAN XYLOSYLTRANSFERASE 5 (XXT5); FUNCTIONS IN: xyloglucan 6-xylosyltransferase activity, transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: N-terminal protein myristoylation, root hair elongation; LOCATED IN: Golgi apparatus, Golgi membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Galactosyl transferase (InterPro:IPR008630); BEST Arabidopsis thaliana protein match is: galactosyl transferase GMA12/MNN10 family protein (TAIR:AT5G07720.1); Has 301 Blast hits to 301 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 117; Plants - 172; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G74380.1p  transcript_id AT1G74380.1  protein_id AT1G74380.1p  transcript_id AT1G74380.1  
At1g74390	chr1:027963538	0.0	C/27963538-27963826,27963309-27963466,27963159-27963205,27963012-27963075,27962094-27962815,27961760-27962000	AT1G74390.1  CDS  gene_syn F1M20.7, F1M20_7  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function exonuclease activity|GO:0004527||IEA  go_component intracellular|GO:0005622||ISS  go_function exonuclease activity|GO:0004527||ISS  product exonuclease family protein  note exonuclease family protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T and DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: exonuclease family protein (TAIR:AT5G07710.1); Has 394 Blast hits to 390 proteins in 136 species: Archae - 0; Bacteria - 250; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT1G74390.1p  transcript_id AT1G74390.1  protein_id AT1G74390.1p  transcript_id AT1G74390.1  
At1g74400	chr1:027963953	0.0	W/27963953-27965341	AT1G74400.1  CDS  gene_syn F1M20.8, F1M20_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21065.1); Has 11504 Blast hits to 4513 proteins in 106 species: Archae - 0; Bacteria - 6; Metazoa - 8; Fungi - 30; Plants - 11280; Viruses - 0; Other Eukaryotes - 180 (source: NCBI BLink).  protein_id AT1G74400.1p  transcript_id AT1G74400.1  protein_id AT1G74400.1p  transcript_id AT1G74400.1  
At1g74410	chr1:027965723	0.0	W/27965723-27965843,27966260-27966438,27966910-27966993,27967314-27967472,27967553-27967681	AT1G74410.1  CDS  gene_syn F1M20.9, F1M20_9  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process response to chitin|GO:0010200|17722694|IEP  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G66070.1); Has 5472 Blast hits to 5456 proteins in 200 species: Archae - 0; Bacteria - 2; Metazoa - 1838; Fungi - 348; Plants - 2530; Viruses - 21; Other Eukaryotes - 733 (source: NCBI BLink).  protein_id AT1G74410.1p  transcript_id AT1G74410.1  protein_id AT1G74410.1p  transcript_id AT1G74410.1  
At1g74420	chr1:027969547	0.0	C/27969547-27969799,27968021-27969333	AT1G74420.1  CDS  gene_syn ATFUT3, F1M20.10, F1M20_10, FUCOSYLTRANSFERASE 3, FUT3  gene FUT3  function Predicted fucosyltransferase, based on similarity to FUT1, but not functionally redundantwith FUT1.  go_component membrane|GO:0016020||IEA  go_process cell wall biogenesis|GO:0042546||IEA  go_function fucosyltransferase activity|GO:0008417|11743104|ISS  go_function fucosyltransferase activity|GO:0008417||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product FUT3 (FUCOSYLTRANSFERASE 3); fucosyltransferase/ transferase, transferring glycosyl groups  note FUCOSYLTRANSFERASE 3 (FUT3); FUNCTIONS IN: transferase activity, transferring glycosyl groups, fucosyltransferase activity; INVOLVED IN: cell wall biogenesis; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan fucosyltransferase (InterPro:IPR004938); BEST Arabidopsis thaliana protein match is: FT1 (FUCOSYLTRANSFERASE 1); fucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT2G03220.1); Has 198 Blast hits to 193 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 198; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G74420.1p  transcript_id AT1G74420.1  protein_id AT1G74420.1p  transcript_id AT1G74420.1  
At1g74420	chr1:027969547	0.0	C/27969547-27969799,27968021-27969345	AT1G74420.2  CDS  gene_syn ATFUT3, F1M20.10, F1M20_10, FUCOSYLTRANSFERASE 3, FUT3  gene FUT3  function Predicted fucosyltransferase, based on similarity to FUT1, but not functionally redundantwith FUT1.  go_component membrane|GO:0016020||IEA  go_process cell wall biogenesis|GO:0042546||IEA  go_function fucosyltransferase activity|GO:0008417|11743104|ISS  go_function fucosyltransferase activity|GO:0008417||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product FUT3 (FUCOSYLTRANSFERASE 3); fucosyltransferase/ transferase, transferring glycosyl groups  note FUCOSYLTRANSFERASE 3 (FUT3); FUNCTIONS IN: transferase activity, transferring glycosyl groups, fucosyltransferase activity; INVOLVED IN: cell wall biogenesis; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan fucosyltransferase (InterPro:IPR004938); BEST Arabidopsis thaliana protein match is: FT1 (FUCOSYLTRANSFERASE 1); fucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT2G03220.1); Has 198 Blast hits to 193 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 198; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G74420.2p  transcript_id AT1G74420.2  protein_id AT1G74420.2p  transcript_id AT1G74420.2  
At1g74430	chr1:027975409	0.0	W/27975409-27975541,27976308-27976437,27976566-27977118	AT1G74430.1  CDS  gene_syn ARABIDOPSIS THALIANA MYB DOMAIN CONTAINING PROTEIN 66, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 95, ATMYB95, ATMYBCP66, F1M20.11, F1M20_11, MYB95, myb domain protein 95  gene MYB95  function Encodes a putative transcription factor (MYB95).  go_process regulation of transcription, DNA-dependent|GO:0006355|11597504|ISS  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_function DNA binding|GO:0003677|11597504|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product MYB95 (myb domain protein 95); DNA binding / transcription factor  note myb domain protein 95 (MYB95); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 6 processes; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: AtMYB47 (myb domain protein 47); DNA binding / transcription factor (TAIR:AT1G18710.1); Has 6222 Blast hits to 5802 proteins in 356 species: Archae - 0; Bacteria - 0; Metazoa - 628; Fungi - 334; Plants - 3707; Viruses - 3; Other Eukaryotes - 1550 (source: NCBI BLink).  protein_id AT1G74430.1p  transcript_id AT1G74430.1  protein_id AT1G74430.1p  transcript_id AT1G74430.1  
At1g74440	chr1:027980009	0.0	C/27980009-27980371,27979576-27979638,27979416-27979487,27979208-27979336	AT1G74440.1  CDS  gene_syn F1M20.12, F1M20_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF962 (InterPro:IPR009305); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G18720.1); Has 424 Blast hits to 424 proteins in 197 species: Archae - 0; Bacteria - 235; Metazoa - 0; Fungi - 92; Plants - 47; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT1G74440.1p  transcript_id AT1G74440.1  protein_id AT1G74440.1p  transcript_id AT1G74440.1  
At1g74448	chr1:027982131	0.0	C/27982131-27982280	AT1G74448.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G74448.1p  transcript_id AT1G74448.1  protein_id AT1G74448.1p  transcript_id AT1G74448.1  
At1g74450	chr1:027982737	0.0	W/27982737-27983930	AT1G74450.1  CDS  gene_syn F1M20.13, F1M20_13  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF793 (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G18740.1); Has 121 Blast hits to 121 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G74450.1p  transcript_id AT1G74450.1  protein_id AT1G74450.1p  transcript_id AT1G74450.1  
At1g74453	chr1:027984604	0.0	C/27984604-27984713	AT1G74453.1  snoRNA  gene_syn 60019.SNORNA00002  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT1G74453.1  
At1g74456	chr1:027984745	0.0	C/27984745-27984826	AT1G74456.1  snoRNA  gene_syn 60019.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT1G74456.1  
At1g74457	chr1:027985957	0.0	W/27985957-27986536	AT1G74457.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G18750; AGL65; DNA binding / transcription factor  
At1g74458	chr1:027987071	0.0	W/27987071-27987164,27987249-27987313,27987426-27987551	AT1G74458.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G74458.1p  transcript_id AT1G74458.1  protein_id AT1G74458.1p  transcript_id AT1G74458.1  
At1g74460	chr1:027989540	0.0	C/27989540-27989765,27989310-27989440,27988941-27989180,27988591-27988840,27988150-27988403	AT1G74460.1  CDS  gene_syn F1M20.14, F1M20_14  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, hypocotyl, flower, root, carpel; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT5G37690.1); Has 1879 Blast hits to 1861 proteins in 192 species: Archae - 0; Bacteria - 284; Metazoa - 1; Fungi - 36; Plants - 1538; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT1G74460.1p  transcript_id AT1G74460.1  protein_id AT1G74460.1p  transcript_id AT1G74460.1  
At1g74470	chr1:027991248	0.0	W/27991248-27991949,27992057-27992453,27992541-27992845	AT1G74470.1  CDS  gene_syn F1M20.15, F1M20_15, GERANYLGERANYL REDUCTASE  function Encodes for a multifunctional protein with geranylgeranyl reductase activity shown to catalyze the reduction of prenylated geranylgeranyl-chlorophyll a to phytyl-chlorophyll a (chlorophyll a) and free geranylgeranyl pyrophosphate to phytyl pyrophosphate.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process chlorophyll biosynthetic process|GO:0015995|9492312|IDA  go_function geranylgeranyl reductase activity|GO:0045550|9492312|IDA  product geranylgeranyl reductase  note geranylgeranyl reductase; FUNCTIONS IN: geranylgeranyl reductase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Geranylgeranyl reductase (InterPro:IPR010253), Aromatic-ring hydroxylase-like (InterPro:IPR003042), Geranylgeranyl reductase, plants and cyanobacteria (InterPro:IPR011774), Geranylgeranyl reductase, plantal and prokaryotic (InterPro:IPR011777); Has 3175 Blast hits to 3175 proteins in 741 species: Archae - 376; Bacteria - 1560; Metazoa - 6; Fungi - 18; Plants - 221; Viruses - 0; Other Eukaryotes - 994 (source: NCBI BLink).  protein_id AT1G74470.1p  transcript_id AT1G74470.1  protein_id AT1G74470.1p  transcript_id AT1G74470.1  
At1g74480	chr1:027994108	0.0	C/27994108-27994178,27993886-27994013,27993435-27993805,27993032-27993358	AT1G74480.1  CDS  gene_syn F1M20.16, F1M20_16  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product RWP-RK domain-containing protein  note RWP-RK domain-containing protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: RWP-RK domain-containing protein (TAIR:AT1G18790.1); Has 216 Blast hits to 214 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 4; Plants - 197; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G74480.1p  transcript_id AT1G74480.1  protein_id AT1G74480.1p  transcript_id AT1G74480.1  
At1g74490	chr1:027996409	0.0	C/27996409-27996496,27995818-27996140,27995590-27995725,27995251-27995511,27994760-27995151	AT1G74490.1  CDS  gene_syn F1M20.17, F1M20_17  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: APK2B (PROTEIN KINASE 2B); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT2G02800.2); Has 81759 Blast hits to 80913 proteins in 2916 species: Archae - 34; Bacteria - 7144; Metazoa - 36289; Fungi - 6105; Plants - 18205; Viruses - 329; Other Eukaryotes - 13653 (source: NCBI BLink).  protein_id AT1G74490.1p  transcript_id AT1G74490.1  protein_id AT1G74490.1p  transcript_id AT1G74490.1  
At1g74500	chr1:027998537	0.0	C/27998537-27998668,27998298-27998447	AT1G74500.1  CDS  gene_syn F1M20.18, F1M20_18  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product bHLH family protein  note bHLH family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: bHLH family protein (TAIR:AT3G47710.1); Has 72 Blast hits to 72 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G74500.1p  transcript_id AT1G74500.1  protein_id AT1G74500.1p  transcript_id AT1G74500.1  
At1g74510	chr1:028006065	0.0	W/28006065-28007420	AT1G74510.1  CDS  gene_syn F1M20.19, F1M20_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT2G02870.3); Has 6157 Blast hits to 3278 proteins in 180 species: Archae - 4; Bacteria - 239; Metazoa - 4985; Fungi - 29; Plants - 576; Viruses - 33; Other Eukaryotes - 291 (source: NCBI BLink).  protein_id AT1G74510.1p  transcript_id AT1G74510.1  protein_id AT1G74510.1p  transcript_id AT1G74510.1  
At1g74510	chr1:028006065	0.0	W/28006065-28007420	AT1G74510.2  CDS  gene_syn F1M20.19, F1M20_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT2G02870.3); Has 6157 Blast hits to 3278 proteins in 180 species: Archae - 4; Bacteria - 239; Metazoa - 4985; Fungi - 29; Plants - 576; Viruses - 33; Other Eukaryotes - 291 (source: NCBI BLink).  protein_id AT1G74510.2p  transcript_id AT1G74510.2  protein_id AT1G74510.2p  transcript_id AT1G74510.2  
At1g74520	chr1:028009095	0.0	C/28009095-28009156,28008824-28008850,28008606-28008728,28008280-28008523,28008109-28008186	AT1G74520.1  CDS  gene_syn ATHVA22A, F1M20.20, F1M20_20  gene ATHVA22A  function Part of the AtHVA22a family. Protein expression is ABA- and stress-inducible.  go_component endomembrane system|GO:0012505||IEA  go_process response to cold|GO:0009409|12081371|IEP  go_process response to water deprivation|GO:0009414|12081371|IEP  go_process response to abscisic acid stimulus|GO:0009737|12081371|IEP  go_process hyperosmotic salinity response|GO:0042538|12081371|IEP  go_function molecular_function|GO:0003674||ND  product ATHVA22A  note ATHVA22A; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to water deprivation, hyperosmotic salinity response, response to cold, response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TB2/DP1 and HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: ATHVA22C (TAIR:AT1G69700.1); Has 1058 Blast hits to 1057 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 556; Fungi - 140; Plants - 299; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT1G74520.1p  transcript_id AT1G74520.1  protein_id AT1G74520.1p  transcript_id AT1G74520.1  
At1g74530	chr1:028011903	0.0	C/28011903-28012044,28011138-28011304,28010976-28011040,28010811-28010877,28010662-28010736,28010457-28010570,28010207-28010284,28010055-28010124,28009963-28009973	AT1G74530.2  CDS  gene_syn F1M20.21, F1M20_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G74530.2p  transcript_id AT1G74530.2  protein_id AT1G74530.2p  transcript_id AT1G74530.2  
At1g74530	chr1:028011903	0.0	C/28011903-28012044,28011138-28011304,28010976-28011040,28010837-28010877,28010662-28010750,28010457-28010570,28010207-28010284,28010059-28010124,28009866-28009973	AT1G74530.1  CDS  gene_syn F1M20.21, F1M20_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G74530.1p  transcript_id AT1G74530.1  protein_id AT1G74530.1p  transcript_id AT1G74530.1  
At1g74530	chr1:028011903	0.0	C/28011903-28012044,28011138-28011304,28010976-28011040,28010837-28010877,28010662-28010750,28010457-28010570,28010207-28010284,28010059-28010124,28009899-28009973,28009723-28009830	AT1G74530.3  CDS  gene_syn F1M20.21, F1M20_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G74530.3p  transcript_id AT1G74530.3  protein_id AT1G74530.3p  transcript_id AT1G74530.3  
At1g74540	chr1:028013362	0.0	W/28013362-28014855	AT1G74540.1  CDS  gene_syn CYP98A8, F1M20.22, F1M20_22  gene CYP98A8  function member of CYP98A  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP98A8; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP98A8; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP98A9; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G74550.1); Has 22615 Blast hits to 22463 proteins in 1216 species: Archae - 21; Bacteria - 1913; Metazoa - 10222; Fungi - 4044; Plants - 5672; Viruses - 0; Other Eukaryotes - 743 (source: NCBI BLink).  protein_id AT1G74540.1p  transcript_id AT1G74540.1  protein_id AT1G74540.1p  transcript_id AT1G74540.1  
At1g74545	chr1:028014585	0.0	C/28014585-28015482	AT1G74545.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G74540  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G74545.1  
At1g74550	chr1:028016086	0.0	W/28016086-28017549	AT1G74550.1  CDS  gene_syn CYP98A9, CYTOCHROME P450, FAMILY 98, SUBFAMILY A, POLYPEPTIDE 9, F1M20.23, F1M20_23  gene CYP98A9  function member of CYP98A  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP98A9; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP98A9; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP98A8; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G74540.1); Has 23790 Blast hits to 23670 proteins in 1287 species: Archae - 23; Bacteria - 2417; Metazoa - 10270; Fungi - 4399; Plants - 5720; Viruses - 3; Other Eukaryotes - 958 (source: NCBI BLink).  protein_id AT1G74550.1p  transcript_id AT1G74550.1  protein_id AT1G74550.1p  transcript_id AT1G74550.1  
At1g74560	chr1:028019772	0.0	C/28019772-28019900,28019184-28019306,28019050-28019100,28018847-28018918,28018613-28018726,28018466-28018530,28018287-28018350,28018138-28018194,28018003-28018050,28017815-28017862	AT1G74560.1  CDS  gene_syn F1M20.24, F1M20_24, NAP1-RELATED PROTEIN 1, NRP1  gene NRP1  function Double nrp1-1 nrp2-1 mutants show arrest of cell cycle progression at G2/M and disordered cellular organization occurred in root tips. Localize in the nucleus and can form homomeric and heteromeric protein complexes with NRP2. Bind histones Histone2A and Histone2B and associate with chromatin in vivo.  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component nucleus|GO:0005634|15469496|IDA  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleus|GO:0005634|17122067|IDA  go_component nucleus|GO:0005634||ISS  go_component cytoplasm|GO:0005737|15610358|IDA  go_component cytoplasm|GO:0005737|17122067|IDA  go_process nucleosome assembly|GO:0006334||ISS  go_process cell proliferation|GO:0008283|17122067|IGI  go_process lateral root formation|GO:0010311|17122067|IGI  go_process cell differentiation|GO:0030154|17122067|IGI  go_function DNA binding|GO:0003677||ISS  go_function chromatin binding|GO:0003682|17122067|IPI  go_function histone binding|GO:0042393|17122067|IPI  product NRP1 (NAP1-RELATED PROTEIN 1); DNA binding / chromatin binding / histone binding  note NAP1-RELATED PROTEIN 1 (NRP1); FUNCTIONS IN: chromatin binding, histone binding, DNA binding; INVOLVED IN: cell differentiation, cell proliferation, response to cadmium ion, nucleosome assembly, lateral root formation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleosome assembly protein (NAP) (InterPro:IPR002164); BEST Arabidopsis thaliana protein match is: NRP2 (NAP1-RELATED PROTEIN 2); DNA binding / chromatin binding / histone binding (TAIR:AT1G18800.1); Has 3047 Blast hits to 2630 proteins in 286 species: Archae - 0; Bacteria - 91; Metazoa - 1363; Fungi - 410; Plants - 217; Viruses - 47; Other Eukaryotes - 919 (source: NCBI BLink).  protein_id AT1G74560.1p  transcript_id AT1G74560.1  protein_id AT1G74560.1p  transcript_id AT1G74560.1  
At1g74560	chr1:028019772	0.0	C/28019772-28019900,28019184-28019306,28019050-28019100,28018847-28018918,28018613-28018726,28018466-28018530,28018287-28018350,28018138-28018197,28018003-28018050,28017815-28017862	AT1G74560.2  CDS  gene_syn F1M20.24, F1M20_24, NAP1-RELATED PROTEIN 1, NRP1  gene NRP1  function Double nrp1-1 nrp2-1 mutants show arrest of cell cycle progression at G2/M and disordered cellular organization occurred in root tips. Localize in the nucleus and can form homomeric and heteromeric protein complexes with NRP2. Bind histones Histone2A and Histone2B and associate with chromatin in vivo.  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component nucleus|GO:0005634|15469496|IDA  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleus|GO:0005634|17122067|IDA  go_component nucleus|GO:0005634||ISS  go_component cytoplasm|GO:0005737|15610358|IDA  go_component cytoplasm|GO:0005737|17122067|IDA  go_process nucleosome assembly|GO:0006334||ISS  go_process cell proliferation|GO:0008283|17122067|IGI  go_process lateral root formation|GO:0010311|17122067|IGI  go_process cell differentiation|GO:0030154|17122067|IGI  go_function DNA binding|GO:0003677||ISS  go_function chromatin binding|GO:0003682|17122067|IPI  go_function histone binding|GO:0042393|17122067|IPI  product NRP1 (NAP1-RELATED PROTEIN 1); DNA binding / chromatin binding / histone binding  note NAP1-RELATED PROTEIN 1 (NRP1); FUNCTIONS IN: chromatin binding, histone binding, DNA binding; INVOLVED IN: cell differentiation, cell proliferation, response to cadmium ion, nucleosome assembly, lateral root formation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleosome assembly protein (NAP) (InterPro:IPR002164); BEST Arabidopsis thaliana protein match is: NRP2 (NAP1-RELATED PROTEIN 2); DNA binding / chromatin binding / histone binding (TAIR:AT1G18800.1); Has 3094 Blast hits to 2666 proteins in 287 species: Archae - 0; Bacteria - 105; Metazoa - 1392; Fungi - 430; Plants - 198; Viruses - 33; Other Eukaryotes - 936 (source: NCBI BLink).  protein_id AT1G74560.2p  transcript_id AT1G74560.2  protein_id AT1G74560.2p  transcript_id AT1G74560.2  
At1g74560	chr1:028019772	0.0	C/28019772-28019900,28019184-28019306,28019050-28019100,28018847-28018918,28018613-28018726,28018466-28018530,28018287-28018350,28018166-28018194,28018003-28018050,28017763-28017862	AT1G74560.3  CDS  gene_syn F1M20.24, F1M20_24, NAP1-RELATED PROTEIN 1, NRP1  gene NRP1  function Double nrp1-1 nrp2-1 mutants show arrest of cell cycle progression at G2/M and disordered cellular organization occurred in root tips. Localize in the nucleus and can form homomeric and heteromeric protein complexes with NRP2. Bind histones Histone2A and Histone2B and associate with chromatin in vivo.  go_component nucleus|GO:0005634|15469496|IDA  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleus|GO:0005634|17122067|IDA  go_component nucleus|GO:0005634||ISS  go_component cytoplasm|GO:0005737|15610358|IDA  go_component cytoplasm|GO:0005737|17122067|IDA  go_process nucleosome assembly|GO:0006334||ISS  go_process cell proliferation|GO:0008283|17122067|IGI  go_process lateral root formation|GO:0010311|17122067|IGI  go_process cell differentiation|GO:0030154|17122067|IGI  go_function DNA binding|GO:0003677||ISS  go_function chromatin binding|GO:0003682|17122067|IPI  go_function histone binding|GO:0042393|17122067|IPI  product NRP1 (NAP1-RELATED PROTEIN 1); DNA binding / chromatin binding / histone binding  note NAP1-RELATED PROTEIN 1 (NRP1); FUNCTIONS IN: chromatin binding, histone binding, DNA binding; INVOLVED IN: cell differentiation, cell proliferation, nucleosome assembly, lateral root formation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleosome assembly protein (NAP) (InterPro:IPR002164); BEST Arabidopsis thaliana protein match is: NRP2 (NAP1-RELATED PROTEIN 2); DNA binding / chromatin binding / histone binding (TAIR:AT1G18800.1); Has 1395 Blast hits to 1395 proteins in 225 species: Archae - 0; Bacteria - 0; Metazoa - 904; Fungi - 186; Plants - 105; Viruses - 0; Other Eukaryotes - 200 (source: NCBI BLink).  protein_id AT1G74560.3p  transcript_id AT1G74560.3  protein_id AT1G74560.3p  transcript_id AT1G74560.3  
At1g74570	chr1:028020383	0.0	C/28020383-28020463	AT1G74570.1  tRNA  gene_syn 60019.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: AAG)  transcript_id AT1G74570.1  
At1g74580	chr1:028020777	0.0	W/28020777-28023068	AT1G74580.1  CDS  gene_syn F1M20.26, F1M20_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G64320.1); Has 27396 Blast hits to 6029 proteins in 185 species: Archae - 5; Bacteria - 18; Metazoa - 811; Fungi - 763; Plants - 24410; Viruses - 0; Other Eukaryotes - 1389 (source: NCBI BLink).  protein_id AT1G74580.1p  transcript_id AT1G74580.1  protein_id AT1G74580.1p  transcript_id AT1G74580.1  
At1g74590	chr1:028024343	0.0	C/28024343-28024666,28023887-28024261	AT1G74590.1  CDS  gene_syn ATGSTU10, F1M20.27, F1M20_27, GLUTATHIONE S-TRANSFERASE TAU 10, GSTU10  gene GSTU10  function Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function glutathione transferase activity|GO:0004364||ISS  product GSTU10 (GLUTATHIONE S-TRANSFERASE TAU 10); glutathione transferase  note GLUTATHIONE S-TRANSFERASE TAU 10 (GSTU10); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: response to cyclopentenone, toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: stem, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9); glutathione transferase (TAIR:AT5G62480.1); Has 5327 Blast hits to 5319 proteins in 791 species: Archae - 0; Bacteria - 2627; Metazoa - 874; Fungi - 72; Plants - 1062; Viruses - 0; Other Eukaryotes - 692 (source: NCBI BLink).  protein_id AT1G74590.1p  transcript_id AT1G74590.1  protein_id AT1G74590.1p  transcript_id AT1G74590.1  
At1g74600	chr1:028025153	0.0	C/28025153-28027840	AT1G74600.1  CDS  gene_syn F1M20.28, F1M20_28  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G13650.1); Has 20560 Blast hits to 5107 proteins in 152 species: Archae - 2; Bacteria - 41; Metazoa - 158; Fungi - 65; Plants - 19798; Viruses - 0; Other Eukaryotes - 496 (source: NCBI BLink).  protein_id AT1G74600.1p  transcript_id AT1G74600.1  protein_id AT1G74600.1p  transcript_id AT1G74600.1  
At1g74610	chr1:028027960	0.0	W/28027960-28028040	AT1G74610.1  tRNA  gene_syn 60019.TRNA-LEU-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: CAG)  transcript_id AT1G74610.1  
At1g74620	chr1:028028252	0.0	W/28028252-28029001	AT1G74620.1  CDS  gene_syn F1M20.30, F1M20_30  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT2G29840.1); Has 6752 Blast hits to 6734 proteins in 219 species: Archae - 0; Bacteria - 0; Metazoa - 2268; Fungi - 549; Plants - 2677; Viruses - 44; Other Eukaryotes - 1214 (source: NCBI BLink).  protein_id AT1G74620.1p  transcript_id AT1G74620.1  protein_id AT1G74620.1p  transcript_id AT1G74620.1  
At1g74630	chr1:028030521	0.0	W/28030521-28032452	AT1G74630.1  CDS  gene_syn F1M20.31, F1M20_31  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G29760.1); Has 13425 Blast hits to 5157 proteins in 165 species: Archae - 0; Bacteria - 8; Metazoa - 77; Fungi - 61; Plants - 12960; Viruses - 0; Other Eukaryotes - 319 (source: NCBI BLink).  protein_id AT1G74630.1p  transcript_id AT1G74630.1  protein_id AT1G74630.1p  transcript_id AT1G74630.1  
At1g74640	chr1:028032849	0.0	W/28032849-28033016,28033285-28033600,28033952-28034114,28034194-28034659	AT1G74640.1  CDS  gene_syn F1M20.32, F1M20_32  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 117 Blast hits to 117 proteins in 49 species: Archae - 14; Bacteria - 76; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G74640.1p  transcript_id AT1G74640.1  protein_id AT1G74640.1p  transcript_id AT1G74640.1  
At1g74650	chr1:028041493	0.0	W/28041493-28041625,28041723-28041852,28042044-28042773	AT1G74650.1  CDS  gene_syn ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 31, ATMYB31, ATY13, F1M20.33, F1M20_33, MYB DOMAIN PROTEIN 31, MYB31  gene MYB31  function Member of the R2R3 factor gene family.  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to chitin|GO:0010200|17722694|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB31 (MYB DOMAIN PROTEIN 31); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 31 (MYB31); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to gibberellin stimulus, response to chitin, regulation of transcription, DNA-dependent, response to salicylic acid stimulus; EXPRESSED IN: stem, petal, inflorescence meristem, hypocotyl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB96 (myb domain protein 96); DNA binding / transcription factor (TAIR:AT5G62470.2); Has 6474 Blast hits to 6022 proteins in 372 species: Archae - 0; Bacteria - 6; Metazoa - 727; Fungi - 302; Plants - 3703; Viruses - 3; Other Eukaryotes - 1733 (source: NCBI BLink).  protein_id AT1G74650.1p  transcript_id AT1G74650.1  protein_id AT1G74650.1p  transcript_id AT1G74650.1  
At1g74660	chr1:028047742	0.0	C/28047742-28048050	AT1G74660.1  CDS  gene_syn F1M20.34, F1M20_34, MIF1, MINI ZINC FINGER 1  gene MIF1  function Constitutive overexpression of MIF1 caused dramatic developmental defects, seedlings were non-responsive to gibberellin (GA) for cell elongation, hypersensitive to the GA synthesis inhibitor paclobutrazol (PAC) and abscisic acid (ABA), and hyposensitive to auxin, brassinosteroid and cytokinin, but normally responsive to ethylene.  go_component chloroplast|GO:0009507||IEA  go_process multicellular organismal development|GO:0007275|16412086|IMP  go_process photomorphogenesis|GO:0009640|16412086|IMP  go_process response to ethylene stimulus|GO:0009723|16412086|IMP  go_process response to auxin stimulus|GO:0009733|16412086|IMP  go_process response to cytokinin stimulus|GO:0009735|16412086|IMP  go_process response to abscisic acid stimulus|GO:0009737|16412086|IMP  go_process response to gibberellin stimulus|GO:0009739|16412086|IMP  go_process response to brassinosteroid stimulus|GO:0009741|16412086|IMP  go_function DNA binding|GO:0003677|16412086|ISS  go_function transcription factor activity|GO:0003700||ISS  product MIF1 (MINI ZINC FINGER 1); DNA binding / transcription factor  note MINI ZINC FINGER 1 (MIF1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 8 processes; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, seedling growth, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ZF-HD homeobox protein Cys/His-rich dimerisation region (InterPro:IPR006456); BEST Arabidopsis thaliana protein match is: MIF3 (MINI ZINC FINGER) (TAIR:AT1G18835.1); Has 224 Blast hits to 224 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 224; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G74660.1p  transcript_id AT1G74660.1  protein_id AT1G74660.1p  transcript_id AT1G74660.1  
At1g74670	chr1:028053378	0.0	W/28053378-28053473,28053604-28053631,28053712-28053893	AT1G74670.1  CDS  gene_syn F1M20.35, F1M20_35  go_component endomembrane system|GO:0012505||IEA  go_process response to gibberellin stimulus|GO:0009739||ISS  go_process gibberellic acid mediated signaling|GO:0009740|11598220|TAS  go_process response to sucrose stimulus|GO:0009744|16463203|IEP  go_process response to glucose stimulus|GO:0009749|16463203|IEP  go_process response to fructose stimulus|GO:0009750|16463203|IEP  go_function molecular_function|GO:0003674||ND  product gibberellin-responsive protein, putative  note gibberellin-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to fructose stimulus, response to gibberellin stimulus, response to sucrose stimulus, gibberellic acid mediated signaling, response to glucose stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: GASA4 (GAST1 PROTEIN HOMOLOG 4) (TAIR:AT5G15230.1); Has 251 Blast hits to 251 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 251; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G74670.1p  transcript_id AT1G74670.1  protein_id AT1G74670.1p  transcript_id AT1G74670.1  
At1g74680	chr1:028059528	0.0	W/28059528-28060385,28060457-28060984	AT1G74680.1  CDS  gene_syn F25A4.34, F25A4_34  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product exostosin family protein  note exostosin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: exostosin family protein (TAIR:AT3G45400.1); Has 661 Blast hits to 657 proteins in 45 species: Archae - 0; Bacteria - 4; Metazoa - 35; Fungi - 4; Plants - 564; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT1G74680.1p  transcript_id AT1G74680.1  protein_id AT1G74680.1p  transcript_id AT1G74680.1  
At1g74690	chr1:028063844	0.0	C/28063844-28063924,28063373-28063672,28063057-28063260,28062861-28062935,28061673-28062744,28061498-28061529	AT1G74690.1  CDS  gene_syn F25A4.33, F25A4_33, IQ-domain 31, IQD31  gene IQD31  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product IQD31 (IQ-domain 31); calmodulin binding  note IQ-domain 31 (IQD31); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQD30; calmodulin binding (TAIR:AT1G18840.2); Has 7267 Blast hits to 5232 proteins in 414 species: Archae - 15; Bacteria - 567; Metazoa - 3152; Fungi - 664; Plants - 611; Viruses - 38; Other Eukaryotes - 2220 (source: NCBI BLink).  protein_id AT1G74690.1p  transcript_id AT1G74690.1  protein_id AT1G74690.1p  transcript_id AT1G74690.1  
At1g74700	chr1:028065345	0.0	W/28065345-28065524,28065869-28066031,28066109-28066179,28066268-28066363,28066495-28066608,28066733-28066801,28066887-28066961,28067056-28067130	AT1G74700.1  CDS  gene_syn F25A4.32, F25A4_32, NUZ, RNASE Z, TRNASE Z 1, TRZ1  gene TRZ1  function Encodes a protein with RNAse Z activity suggesting a role in tRNA processing.  go_component nucleus|GO:0005634|12032089|TAS  go_process tRNA processing|GO:0008033|12032089|TAS  go_process tRNA 3 -end processing|GO:0042780|19411372|IDA  go_function 3 -tRNA processing endoribonuclease activity|GO:0042781|12032089|IDA  go_function 3 -tRNA processing endoribonuclease activity|GO:0042781|19411372|IDA  product TRZ1 (TRNASE Z 1); 3 -tRNA processing endoribonuclease  note TRNASE Z 1 (TRZ1); FUNCTIONS IN: 3 -tRNA processing endoribonuclease activity; INVOLVED IN: tRNA processing, tRNA 3 -end processing; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: CPZ; 3 -tRNA processing endoribonuclease (TAIR:AT2G04530.1); Has 979 Blast hits to 979 proteins in 441 species: Archae - 153; Bacteria - 686; Metazoa - 25; Fungi - 11; Plants - 41; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT1G74700.1p  transcript_id AT1G74700.1  protein_id AT1G74700.1p  transcript_id AT1G74700.1  
At1g74710	chr1:028070391	0.0	W/28070391-28070507,28070602-28070790,28071546-28071923,28072000-28072263,28072356-28072430,28072513-28072581,28072694-28072812,28072899-28072956,28073053-28073163,28073256-28073340,28073432-28073529,28073657-28073749,28073845-28073898	AT1G74710.1  CDS  gene_syn EDS16, ENHANCED DISEASE SUSCEPTIBILITY TO ERYSIPHE ORONTII 16, F25A4.31, ICS1, ISOCHORISMATE SYNTHASE, ISOCHORISMATE SYNTHASE 1, SALICYLIC ACID INDUCTION DEFICIENT 2, SID2  gene EDS16  function Encodes a protein with isochorismate synthase activity. Mutants fail to accumulate salicylic acid. Its function may be redundant with that of ICS2 (AT1G18870).  go_component plastid|GO:0009536|11734859|ISS  go_component plastid|GO:0009536|18451262|IDA  go_process response to bacterium|GO:0009617|15842626|IMP  go_process systemic acquired resistance|GO:0009627|11734859|IMP  go_process systemic acquired resistance|GO:0009627|17419843|IEP  go_process salicylic acid biosynthetic process|GO:0009697|11734859|IMP  go_process salicylic acid biosynthetic process|GO:0009697|15842626|TAS  go_process stomatal movement|GO:0010118|16959575|IMP  go_process negative regulation of defense response|GO:0031348|16732289|IMP  go_process phylloquinone biosynthetic process|GO:0042372|16617180|IMP  go_process phylloquinone biosynthetic process|GO:0042372|18451262|IMP  go_process defense response to bacterium|GO:0042742|16959575|IMP  go_process defense response to fungus|GO:0050832|17513501|IMP  go_function isochorismate synthase activity|GO:0008909|11734859|IMP  go_function isochorismate synthase activity|GO:0008909|11734859|TAS  go_function isochorismate synthase activity|GO:0008909|18451262|IMP  product isochorismate synthase 1 (ICS1) / isochorismate mutase  note ENHANCED DISEASE SUSCEPTIBILITY TO ERYSIPHE ORONTII 16 (EDS16); FUNCTIONS IN: isochorismate synthase activity; INVOLVED IN: in 8 processes; LOCATED IN: plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chorismate binding, C-terminal (InterPro:IPR015890), Anthranilate synthase component I and chorismate binding protein (InterPro:IPR005801), Isochorismate synthase (InterPro:IPR004561); BEST Arabidopsis thaliana protein match is: ICS2 (ISOCHORISMATE SYNTHASE 2); isochorismate synthase (TAIR:AT1G18870.1); Has 8960 Blast hits to 8957 proteins in 1331 species: Archae - 159; Bacteria - 5472; Metazoa - 4; Fungi - 171; Plants - 127; Viruses - 0; Other Eukaryotes - 3027 (source: NCBI BLink).  protein_id AT1G74710.1p  transcript_id AT1G74710.1  protein_id AT1G74710.1p  transcript_id AT1G74710.1  
At1g74710	chr1:028070391	0.0	W/28070391-28070507,28070602-28070790,28071546-28071923,28072000-28072263,28072356-28072430,28072513-28072581,28072694-28072812,28072899-28072956,28073053-28073163,28073256-28073340,28073432-28073529,28073657-28073962	AT1G74710.2  CDS  gene_syn EDS16, ENHANCED DISEASE SUSCEPTIBILITY TO ERYSIPHE ORONTII 16, F25A4.31, ICS1, ISOCHORISMATE SYNTHASE, ISOCHORISMATE SYNTHASE 1, SALICYLIC ACID INDUCTION DEFICIENT 2, SID2  gene EDS16  function Encodes a protein with isochorismate synthase activity. Mutants fail to accumulate salicylic acid. Its function may be redundant with that of ICS2 (AT1G18870).  go_component plastid|GO:0009536|11734859|ISS  go_component plastid|GO:0009536|18451262|IDA  go_process response to bacterium|GO:0009617|15842626|IMP  go_process systemic acquired resistance|GO:0009627|11734859|IMP  go_process systemic acquired resistance|GO:0009627|17419843|IEP  go_process salicylic acid biosynthetic process|GO:0009697|11734859|IMP  go_process salicylic acid biosynthetic process|GO:0009697|15842626|TAS  go_process stomatal movement|GO:0010118|16959575|IMP  go_process negative regulation of defense response|GO:0031348|16732289|IMP  go_process phylloquinone biosynthetic process|GO:0042372|16617180|IMP  go_process phylloquinone biosynthetic process|GO:0042372|18451262|IMP  go_process defense response to bacterium|GO:0042742|16959575|IMP  go_process defense response to fungus|GO:0050832|17513501|IMP  go_function isochorismate synthase activity|GO:0008909|11734859|IMP  go_function isochorismate synthase activity|GO:0008909|11734859|TAS  go_function isochorismate synthase activity|GO:0008909|18451262|IMP  product isochorismate synthase 1 (ICS1) / isochorismate mutase  note ENHANCED DISEASE SUSCEPTIBILITY TO ERYSIPHE ORONTII 16 (EDS16); FUNCTIONS IN: isochorismate synthase activity; INVOLVED IN: in 8 processes; LOCATED IN: plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chorismate binding, C-terminal (InterPro:IPR015890), Anthranilate synthase component I and chorismate binding protein (InterPro:IPR005801), Isochorismate synthase (InterPro:IPR004561); BEST Arabidopsis thaliana protein match is: ICS2 (ISOCHORISMATE SYNTHASE 2); isochorismate synthase (TAIR:AT1G18870.1); Has 8931 Blast hits to 8928 proteins in 1329 species: Archae - 159; Bacteria - 5462; Metazoa - 4; Fungi - 171; Plants - 127; Viruses - 0; Other Eukaryotes - 3008 (source: NCBI BLink).  protein_id AT1G74710.2p  transcript_id AT1G74710.2  protein_id AT1G74710.2p  transcript_id AT1G74710.2  
At1g74720	chr1:028075173	0.0	W/28075173-28078418	AT1G74720.1  CDS  gene_syn F25A4.35, F25A4_35  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal, plant (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT5G17980.1); Has 5335 Blast hits to 4284 proteins in 306 species: Archae - 2; Bacteria - 102; Metazoa - 2796; Fungi - 545; Plants - 891; Viruses - 32; Other Eukaryotes - 967 (source: NCBI BLink).  protein_id AT1G74720.1p  transcript_id AT1G74720.1  protein_id AT1G74720.1p  transcript_id AT1G74720.1  
At1g74730	chr1:028078995	0.0	W/28078995-28079147,28079388-28079831	AT1G74730.1  CDS  gene_syn F25A4.30, F25A4_30  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1118 (InterPro:IPR009500); Has 41 Blast hits to 41 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G74730.1p  transcript_id AT1G74730.1  protein_id AT1G74730.1p  transcript_id AT1G74730.1  
At1g74740	chr1:028081837	0.0	C/28081837-28082476,28081540-28081683,28081307-28081459,28081066-28081181,28080804-28080971,28080477-28080707,28080199-28080372	AT1G74740.1  CDS  gene_syn CALCIUM-DEPENDENT PROTEIN KINASE 1A, CALCIUM-DEPENDENT PROTEIN KINASE 30, CDPK1A, CPK30, F25A4.29, F25A4_29  gene CPK30  function member of Calcium Dependent Protein Kinase  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process abscisic acid mediated signaling|GO:0009738|8943201|TAS  go_function protein kinase activity|GO:0004672|8943201|TAS  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  go_function kinase activity|GO:0016301||ISS  product CPK30 (CALCIUM-DEPENDENT PROTEIN KINASE 30); calmodulin-dependent protein kinase/ kinase/ protein kinase  note CALCIUM-DEPENDENT PROTEIN KINASE 30 (CPK30); FUNCTIONS IN: protein kinase activity, calmodulin-dependent protein kinase activity, kinase activity; INVOLVED IN: abscisic acid mediated signaling, protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: ATCDPK1 (CALCIUM-DEPENDENT PROTEIN KINASE 1); calmodulin-dependent protein kinase/ kinase/ protein kinase (TAIR:AT1G18890.1); Has 96477 Blast hits to 91794 proteins in 2719 species: Archae - 70; Bacteria - 7955; Metazoa - 41577; Fungi - 11923; Plants - 15492; Viruses - 438; Other Eukaryotes - 19022 (source: NCBI BLink).  protein_id AT1G74740.1p  transcript_id AT1G74740.1  protein_id AT1G74740.1p  transcript_id AT1G74740.1  
At1g74750	chr1:028086800	0.0	W/28086800-28089367	AT1G74750.1  CDS  gene_syn F25A4.28, F25A4_28  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G18900.2); Has 23189 Blast hits to 5933 proteins in 176 species: Archae - 3; Bacteria - 26; Metazoa - 522; Fungi - 470; Plants - 21265; Viruses - 0; Other Eukaryotes - 903 (source: NCBI BLink).  protein_id AT1G74750.1p  transcript_id AT1G74750.1  protein_id AT1G74750.1p  transcript_id AT1G74750.1  
At1g74770	chr1:028094559	0.0	C/28094559-28094834,28094012-28094230,28093689-28093883,28093263-28093615,28092912-28093140,28091115-28092796,28090784-28091005,28090560-28090694,28090201-28090435,28090038-28090097,28089890-28089961,28089695-28089796	AT1G74770.1  CDS  gene_syn F25A4.26, F25A4_26  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Zinc finger, CTCHY-type (InterPro:IPR017921), Zinc finger, CHY-type (InterPro:IPR008913), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Haemerythrin/HHE cation-binding motif (InterPro:IPR012312); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G18910.1); Has 1119 Blast hits to 1084 proteins in 147 species: Archae - 0; Bacteria - 1; Metazoa - 578; Fungi - 102; Plants - 255; Viruses - 4; Other Eukaryotes - 179 (source: NCBI BLink).  protein_id AT1G74770.1p  transcript_id AT1G74770.1  protein_id AT1G74770.1p  transcript_id AT1G74770.1  
At1g74780	chr1:028095916	0.0	W/28095916-28096392,28096788-28097912	AT1G74780.1  CDS  gene_syn F25A4.25, F25A4_25  go_component endomembrane system|GO:0012505||IEA  product nodulin family protein  note nodulin family protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nodulin family protein (TAIR:AT1G18940.1); Has 1801 Blast hits to 1756 proteins in 510 species: Archae - 9; Bacteria - 869; Metazoa - 40; Fungi - 217; Plants - 319; Viruses - 0; Other Eukaryotes - 347 (source: NCBI BLink).  protein_id AT1G74780.1p  transcript_id AT1G74780.1  protein_id AT1G74780.1p  transcript_id AT1G74780.1  
At1g74790	chr1:028098912	0.0	W/28098912-28099002,28099094-28099251,28099459-28100244,28100330-28100543,28100659-28100837,28100912-28101153,28101256-28101673	AT1G74790.1  CDS  gene_syn F25A4.24, F25A4_24  go_component plasma membrane|GO:0005886|17317660|IDA  go_component anchored to plasma membrane|GO:0046658|12805588|IDA  go_function catalytic activity|GO:0003824||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component anchored to membrane|GO:0031225|10451111|TAS  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  product catalytic  note catalytic; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Soluble quinoprotein glucose dehydrogenase (InterPro:IPR011041), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: HIPL2 (HIPL2 PROTEIN PRECURSOR); catalytic (TAIR:AT5G62630.1); Has 2812 Blast hits to 2812 proteins in 505 species: Archae - 36; Bacteria - 1148; Metazoa - 114; Fungi - 4; Plants - 249; Viruses - 0; Other Eukaryotes - 1261 (source: NCBI BLink).  protein_id AT1G74790.1p  transcript_id AT1G74790.1  protein_id AT1G74790.1p  transcript_id AT1G74790.1  
At1g74800	chr1:028104123	0.0	C/28104123-28104993,28103765-28103997,28103350-28103640,28103035-28103163,28102757-28102930,28102510-28102617,28102221-28102433	AT1G74800.1  CDS  gene_syn F25A4.23, F25A4_23  go_component membrane|GO:0016020||IEA  go_process protein amino acid glycosylation|GO:0006486||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product galactosyltransferase family protein  note galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Galectin, carbohydrate recognition domain (InterPro:IPR001079), Glycosyl transferase, family 31 (InterPro:IPR002659), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: galactosyltransferase family protein (TAIR:AT5G62620.1); Has 1697 Blast hits to 1688 proteins in 89 species: Archae - 0; Bacteria - 2; Metazoa - 1349; Fungi - 4; Plants - 314; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT1G74800.1p  transcript_id AT1G74800.1  protein_id AT1G74800.1p  transcript_id AT1G74800.1  
At1g74810	chr1:028108474	0.0	W/28108474-28108592,28108665-28108747,28108839-28109031,28109116-28109254,28109344-28109509,28109596-28109762,28109839-28110012,28110096-28110191,28110269-28110385,28110452-28110789,28110870-28111149,28111251-28111370,28111475-28111534	AT1G74810.1  CDS  gene_syn BOR5, F9E10.34, F9E10_34  gene BOR5  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process anion transport|GO:0006820||IEA  go_function anion exchanger activity|GO:0015380||ISS  product BOR5; anion exchanger  note BOR5; FUNCTIONS IN: anion exchanger activity; INVOLVED IN: anion transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, eukaryotic (InterPro:IPR003020), Bicarbonate transporter, C-terminal (InterPro:IPR011531); BEST Arabidopsis thaliana protein match is: BOR4 (REQUIRES HIGH BORON 4); anion exchanger (TAIR:AT1G15460.1); Has 2020 Blast hits to 1068 proteins in 140 species: Archae - 0; Bacteria - 4; Metazoa - 1674; Fungi - 196; Plants - 98; Viruses - 2; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT1G74810.1p  transcript_id AT1G74810.1  protein_id AT1G74810.1p  transcript_id AT1G74810.1  
At1g74820	chr1:028111882	0.0	C/28111882-28112565	AT1G74820.1  CDS  gene_syn F9E10.33, F9E10_33  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process biological_process|GO:0008150||ND  product cupin family protein  note cupin family protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: sepal; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: germin-like protein, putative (TAIR:AT1G18980.1); Has 895 Blast hits to 888 proteins in 97 species: Archae - 0; Bacteria - 54; Metazoa - 0; Fungi - 22; Plants - 812; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G74820.1p  transcript_id AT1G74820.1  protein_id AT1G74820.1p  transcript_id AT1G74820.1  
At1g74830	chr1:028113771	0.0	C/28113771-28115193,28113469-28113674	AT1G74830.1  CDS  gene_syn F25A4.20, F25A4_20  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G18990.1); Has 3099 Blast hits to 2556 proteins in 339 species: Archae - 11; Bacteria - 349; Metazoa - 986; Fungi - 174; Plants - 347; Viruses - 44; Other Eukaryotes - 1188 (source: NCBI BLink).  protein_id AT1G74830.1p  transcript_id AT1G74830.1  protein_id AT1G74830.1p  transcript_id AT1G74830.1  
At1g74840	chr1:028117035	0.0	C/28117035-28117317,28116663-28116871,28116201-28116506	AT1G74840.1  CDS  gene_syn F25A4.19, F25A4_19  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 9 processes; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT1G19000.2); Has 742 Blast hits to 741 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 677; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT1G74840.1p  transcript_id AT1G74840.1  protein_id AT1G74840.1p  transcript_id AT1G74840.1  
At1g74850	chr1:028120480	0.0	C/28120480-28122314,28119867-28120181,28119671-28119775,28119237-28119570	AT1G74850.1  CDS  gene_syn F25A4.18, F25A4_18, PLASTID TRANSCRIPTIONALLY ACTIVE2, PTAC2  gene PTAC2  function Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.  go_component nucleoid|GO:0009295|16326926|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastid chromosome|GO:0009508|16326926|IDA  go_process transcription from plastid promoter|GO:0042793|16326926|IMP  go_process positive regulation of transcription, DNA-dependent|GO:0045893|16326926|IMP  product PTAC2 (PLASTID TRANSCRIPTIONALLY ACTIVE2)  note PLASTID TRANSCRIPTIONALLY ACTIVE2 (PTAC2); INVOLVED IN: positive regulation of transcription, DNA-dependent, transcription from plastid promoter; LOCATED IN: plastid chromosome, chloroplast, nucleoid; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G02860.1); Has 24834 Blast hits to 6307 proteins in 189 species: Archae - 6; Bacteria - 26; Metazoa - 833; Fungi - 632; Plants - 21844; Viruses - 0; Other Eukaryotes - 1493 (source: NCBI BLink).  protein_id AT1G74850.1p  transcript_id AT1G74850.1  protein_id AT1G74850.1p  transcript_id AT1G74850.1  
At1g74860	chr1:028123432	0.0	W/28123432-28123446,28123690-28123866,28124590-28125600	AT1G74860.1  CDS  gene_syn F25A4.17, F25A4_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19010.1); Has 167 Blast hits to 156 proteins in 44 species: Archae - 0; Bacteria - 7; Metazoa - 75; Fungi - 13; Plants - 29; Viruses - 1; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT1G74860.1p  transcript_id AT1G74860.1  protein_id AT1G74860.1p  transcript_id AT1G74860.1  
At1g74870	chr1:028127093	0.0	W/28127093-28127164,28127392-28127458,28127545-28128275	AT1G74870.1  CDS  gene_syn F25A4.16, F25A4_16  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: sperm cell, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT3G48070.2); Has 375 Blast hits to 375 proteins in 129 species: Archae - 0; Bacteria - 2; Metazoa - 159; Fungi - 82; Plants - 73; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT1G74870.1p  transcript_id AT1G74870.1  protein_id AT1G74870.1p  transcript_id AT1G74870.1  
At1g74875	chr1:028129661	0.0	C/28129661-28129745,28128470-28129116	AT1G74875.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G67623.1).  protein_id AT1G74875.1p  transcript_id AT1G74875.1  protein_id AT1G74875.1p  transcript_id AT1G74875.1  
At1g74880	chr1:028130798	0.0	C/28130798-28131020,28130648-28130703,28130492-28130557,28130375-28130416,28130238-28130297,28130112-28130141	AT1G74880.1  CDS  gene_syn F25A4.15, F25A4_15, NAD(P)H:plastoquinone dehydrogenase complex subunit O, NDH-O  gene NDH-O  function Encodes subunit NDH-O of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15608332|TAS  go_component NAD(P)H dehydrogenase complex (plastoquinone)|GO:0010598|15608332|TAS  go_process NADH dehydrogenase complex (plastoquinone) assembly|GO:0010258|15608332|IMP  go_function molecular_function|GO:0003674||ND  product NDH-O (NAD(P)H:plastoquinone dehydrogenase complex subunit O)  note NAD(P)H:plastoquinone dehydrogenase complex subunit O (NDH-O); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: NADH dehydrogenase complex (plastoquinone) assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 64 Blast hits to 64 proteins in 17 species: Archae - 0; Bacteria - 24; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G74880.1p  transcript_id AT1G74880.1  protein_id AT1G74880.1p  transcript_id AT1G74880.1  
At1g74890	chr1:028132581	0.0	C/28132581-28132710,28132406-28132482,28132120-28132197,28131957-28132027,28131590-28131854	AT1G74890.1  CDS  gene_syn ARR15, F25A4.14, F25A4_14, RESPONSE REGULATOR 15  gene ARR15  function Encodes a nuclear response regulator that acts as a negative regulator in cytokinin-mediated signal transduction. Transcript accumulates in leaves and roots in response to cytokinin treatment.  go_component nucleus|GO:0005634|12354925|IDA  go_component nucleus|GO:0005634|18642946|IDA  go_component cytoplasm|GO:0005737|18642946|IDA  go_process response to cytokinin stimulus|GO:0009735|11115887|IEP  go_process response to cytokinin stimulus|GO:0009735|12354925|IEP  go_process response to cytokinin stimulus|GO:0009735|16407152|IEP  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_process cytokinin mediated signaling|GO:0009736|12941880|IGI  go_function two-component response regulator activity|GO:0000156|12068096|ISS  go_function two-component response regulator activity|GO:0000156||ISS  go_function transcription regulator activity|GO:0030528|12068096|TAS  product ARR15 (RESPONSE REGULATOR 15); transcription regulator/ two-component response regulator  note RESPONSE REGULATOR 15 (ARR15); FUNCTIONS IN: transcription regulator activity, two-component response regulator activity; INVOLVED IN: cytokinin mediated signaling, response to cytokinin stimulus; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver region (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: ARR7 (RESPONSE REGULATOR 7); transcription regulator/ two-component response regulator (TAIR:AT1G19050.1); Has 28439 Blast hits to 27958 proteins in 1511 species: Archae - 182; Bacteria - 23728; Metazoa - 25; Fungi - 423; Plants - 745; Viruses - 4; Other Eukaryotes - 3332 (source: NCBI BLink).  protein_id AT1G74890.1p  transcript_id AT1G74890.1  protein_id AT1G74890.1p  transcript_id AT1G74890.1  
At1g74900	chr1:028133933	0.0	W/28133933-28135214,28135302-28135381	AT1G74900.1  CDS  gene_syn F25A4.13, F25A4_13, OTP43, organelle transcript processing defect 43  gene OTP43  go_component cellular_component|GO:0005575||ND  go_process RNA splicing|GO:0008380|17965268|IGI  product OTP43 (organelle transcript processing defect 43)  note organelle transcript processing defect 43 (OTP43); INVOLVED IN: RNA splicing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G77360.1); Has 21375 Blast hits to 5919 proteins in 187 species: Archae - 3; Bacteria - 28; Metazoa - 627; Fungi - 455; Plants - 19353; Viruses - 0; Other Eukaryotes - 909 (source: NCBI BLink).  protein_id AT1G74900.1p  transcript_id AT1G74900.1  protein_id AT1G74900.1p  transcript_id AT1G74900.1  
At1g74910	chr1:028138396	0.0	C/28138396-28138456,28138090-28138187,28137905-28138005,28137714-28137792,28137551-28137611,28137414-28137460,28137241-28137333,28137068-28137158,28136921-28136969,28136725-28136838,28136457-28136604,28136277-28136369,28136124-28136196,28135966-28136002,28135852-28135870	AT1G74910.3  CDS  gene_syn F25A4.12, F25A4_12  go_component peroxisome|GO:0005777|12154131|IDA  go_process biosynthetic process|GO:0009058||IEA  go_function transferase activity|GO:0016740||IEA  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_process biosynthetic process|GO:0009058||ISS  go_function nucleotidyltransferase activity|GO:0016779||ISS  product ADP-glucose pyrophosphorylase family protein  note ADP-glucose pyrophosphorylase family protein; FUNCTIONS IN: transferase activity, nucleotidyltransferase activity; INVOLVED IN: biosynthetic process; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), Bacterial transferase hexapeptide repeat (InterPro:IPR001451), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: ADP-glucose pyrophosphorylase family protein (TAIR:AT2G04650.1); Has 5473 Blast hits to 5467 proteins in 1130 species: Archae - 375; Bacteria - 2981; Metazoa - 328; Fungi - 192; Plants - 211; Viruses - 0; Other Eukaryotes - 1386 (source: NCBI BLink).  protein_id AT1G74910.3p  transcript_id AT1G74910.3  protein_id AT1G74910.3p  transcript_id AT1G74910.3  
At1g74910	chr1:028138396	0.0	C/28138396-28138456,28138090-28138187,28137905-28138005,28137714-28137792,28137551-28137611,28137414-28137460,28137241-28137333,28137068-28137158,28136921-28136969,28136725-28136838,28136457-28136604,28136277-28136369,28136128-28136196,28135966-28136008,28135770-28135870	AT1G74910.1  CDS  gene_syn F25A4.12, F25A4_12  go_component peroxisome|GO:0005777|12154131|IDA  go_process biosynthetic process|GO:0009058||IEA  go_function transferase activity|GO:0016740||IEA  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_process biosynthetic process|GO:0009058||ISS  go_function nucleotidyltransferase activity|GO:0016779||ISS  product ADP-glucose pyrophosphorylase family protein  note ADP-glucose pyrophosphorylase family protein; FUNCTIONS IN: transferase activity, nucleotidyltransferase activity; INVOLVED IN: biosynthetic process; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), Bacterial transferase hexapeptide repeat (InterPro:IPR001451), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: ADP-glucose pyrophosphorylase family protein (TAIR:AT2G04650.1); Has 5617 Blast hits to 5611 proteins in 1142 species: Archae - 383; Bacteria - 3084; Metazoa - 330; Fungi - 199; Plants - 216; Viruses - 0; Other Eukaryotes - 1405 (source: NCBI BLink).  protein_id AT1G74910.1p  transcript_id AT1G74910.1  protein_id AT1G74910.1p  transcript_id AT1G74910.1  
At1g74910	chr1:028138396	0.0	C/28138396-28138456,28138090-28138187,28137905-28138005,28137714-28137792,28137551-28137611,28137414-28137460,28137241-28137333,28137068-28137158,28136921-28136969,28136725-28136838,28136457-28136604,28136277-28136369,28136128-28136196,28135966-28136008,28135770-28135870	AT1G74910.2  CDS  gene_syn F25A4.12, F25A4_12  go_component peroxisome|GO:0005777|12154131|IDA  go_process biosynthetic process|GO:0009058||IEA  go_function transferase activity|GO:0016740||IEA  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_process biosynthetic process|GO:0009058||ISS  go_function nucleotidyltransferase activity|GO:0016779||ISS  product ADP-glucose pyrophosphorylase family protein  note ADP-glucose pyrophosphorylase family protein; FUNCTIONS IN: transferase activity, nucleotidyltransferase activity; INVOLVED IN: biosynthetic process; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), Bacterial transferase hexapeptide repeat (InterPro:IPR001451), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: ADP-glucose pyrophosphorylase family protein (TAIR:AT2G04650.1); Has 5617 Blast hits to 5611 proteins in 1142 species: Archae - 383; Bacteria - 3084; Metazoa - 330; Fungi - 199; Plants - 216; Viruses - 0; Other Eukaryotes - 1405 (source: NCBI BLink).  protein_id AT1G74910.2p  transcript_id AT1G74910.2  protein_id AT1G74910.2p  transcript_id AT1G74910.2  
At1g74920	chr1:028142465	0.0	C/28142465-28142573,28142122-28142264,28141938-28142018,28141703-28141851,28141511-28141603,28141304-28141427,28141110-28141175,28140947-28141013,28140694-28140770,28140356-28140469,28139996-28140073,28139756-28139907,28139572-28139632,28139362-28139468,28139175-28139259	AT1G74920.1  CDS  gene_syn ALDEHYDE DEHYDROGENASE 10A8, ALDH10A8, F25A4.11, F25A4_11  gene ALDH10A8  function Arabidopsis thaliana similar to betaine aldehyde dehydrogenase  go_component cell wall|GO:0005618|16287169|IDA  go_process metabolic process|GO:0008152||IEA  go_process glycine betaine biosynthetic process from choline|GO:0019285||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function 3-chloroallyl aldehyde dehydrogenase activity|GO:0004028||ISS  product ALDH10A8; 3-chloroallyl aldehyde dehydrogenase/ oxidoreductase  note ALDH10A8; FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, oxidoreductase activity; INVOLVED IN: glycine betaine biosynthetic process from choline, metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: ALDH10A9; 3-chloroallyl aldehyde dehydrogenase/ oxidoreductase (TAIR:AT3G48170.1); Has 43759 Blast hits to 43510 proteins in 1818 species: Archae - 247; Bacteria - 20211; Metazoa - 2280; Fungi - 1314; Plants - 602; Viruses - 0; Other Eukaryotes - 19105 (source: NCBI BLink).  protein_id AT1G74920.1p  transcript_id AT1G74920.1  protein_id AT1G74920.1p  transcript_id AT1G74920.1  
At1g74929	chr1:028143997	0.0	C/28143997-28144098	AT1G74929.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G74929.1p  transcript_id AT1G74929.1  protein_id AT1G74929.1p  transcript_id AT1G74929.1  
At1g74930	chr1:028144239	0.0	W/28144239-28144826	AT1G74930.1  CDS  gene_syn F25A4.10, F25A4_10, ORA47  gene ORA47  function encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to biotic stimulus|GO:0009607|17953483|IEP  go_process response to wounding|GO:0009611|17953483|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product ORA47; DNA binding / transcription factor  note ORA47; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to biotic stimulus, response to wounding, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT1G19210.1); Has 3605 Blast hits to 3540 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3600; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G74930.1p  transcript_id AT1G74930.1  protein_id AT1G74930.1p  transcript_id AT1G74930.1  
At1g74940	chr1:028146284	0.0	W/28146284-28146792,28146906-28147065	AT1G74940.1  CDS  gene_syn F25A4.9, F25A4_9  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product senescence-associated protein-related  note senescence-associated protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: senescence-associated protein-related (TAIR:AT1G19200.1); Has 261 Blast hits to 261 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 261; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G74940.1p  transcript_id AT1G74940.1  protein_id AT1G74940.1p  transcript_id AT1G74940.1  
At1g74950	chr1:028150111	0.0	C/28150111-28150258,28149614-28149791,28149244-28149521,28149099-28149156,28148919-28149006	AT1G74950.1  CDS  gene_syn F25A4.8, F25A4_8, JASMONATE-ZIM-DOMAIN PROTEIN 2, JAZ2, TIFY10B  gene TIFY10B  go_component cellular_component|GO:0005575||ND  go_process response to wounding|GO:0009611|17675405|IEP  go_process response to jasmonic acid stimulus|GO:0009753|17637677|IEP  go_function molecular_function|GO:0003674||ND  product TIFY10B  note TIFY10B; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to jasmonic acid stimulus, response to wounding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1); protein binding (TAIR:AT1G19180.1); Has 249 Blast hits to 244 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 249; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G74950.1p  transcript_id AT1G74950.1  protein_id AT1G74950.1p  transcript_id AT1G74950.1  
At1g74960	chr1:028155630	0.0	C/28155630-28155948,28155037-28155239,28154725-28154928,28154415-28154525,28154229-28154324,28154089-28154134,28153919-28153998,28153615-28153683,28153393-28153477,28153129-28153283,28152973-28153053,28152790-28152849,28152564-28152680	AT1G74960.1  CDS  gene_syn BETA-KETOACYL-ACP SYNTHETASE 2, F25A4.7, F25A4_7, FAB1, FATTY ACID BIOSYNTHESIS 1, KAS2  gene FAB1  function Encodes a plastidic beta-ketoacyl-ACP synthase II, involved in fatty acid elongation from 16:0-ACP to 18:0-ACP. Homozygous knock-out mutants are embryo lethal, indicating early embryo development is sensitive to elevated 16:0.  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastid|GO:0009536|12148534|ISS  go_process fatty acid biosynthetic process|GO:0006633|12148534|IDA  go_process unsaturated fatty acid biosynthetic process|GO:0006636|12068126|TAS  go_function fatty-acid synthase activity|GO:0004312||ISS  go_function 3-oxoacyl-[acyl-carrier-protein] synthase activity|GO:0004315|12148534|IDA  go_function 3-oxoacyl-[acyl-carrier-protein] synthase activity|GO:0004315|12148534|IMP  product FAB1 (FATTY ACID BIOSYNTHESIS 1); 3-oxoacyl-[acyl-carrier-protein] synthase/ fatty-acid synthase  note FATTY ACID BIOSYNTHESIS 1 (FAB1); FUNCTIONS IN: fatty-acid synthase activity, 3-oxoacyl-[acyl-carrier-protein] synthase activity; INVOLVED IN: fatty acid biosynthetic process, unsaturated fatty acid biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Beta-ketoacyl synthase (InterPro:IPR000794), Thiolase-like (InterPro:IPR016039), Beta-ketoacyl synthase, C-terminal (InterPro:IPR014031), 3-oxoacyl-[acyl-carrier-protein] synthase 2 (InterPro:IPR017568), Beta-ketoacyl synthase, N-terminal (InterPro:IPR014030), Thiolase-like, subgroup (InterPro:IPR016038), Beta-ketoacyl synthase, active site (InterPro:IPR018201); BEST Arabidopsis thaliana protein match is: KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I); catalytic/ fatty-acid synthase/ transferase, transferring acyl groups other than amino-acyl groups (TAIR:AT5G46290.1); Has 19713 Blast hits to 17933 proteins in 2058 species: Archae - 3; Bacteria - 11722; Metazoa - 445; Fungi - 1737; Plants - 210; Viruses - 0; Other Eukaryotes - 5596 (source: NCBI BLink).  protein_id AT1G74960.1p  transcript_id AT1G74960.1  protein_id AT1G74960.1p  transcript_id AT1G74960.1  
At1g74960	chr1:028155630	0.0	C/28155630-28155948,28155037-28155239,28154725-28154928,28154415-28154525,28154229-28154324,28154089-28154134,28153919-28153998,28153615-28153683,28153393-28153477,28153129-28153283,28152973-28153053,28152790-28152849,28152564-28152680	AT1G74960.2  CDS  gene_syn BETA-KETOACYL-ACP SYNTHETASE 2, F25A4.7, F25A4_7, FAB1, FATTY ACID BIOSYNTHESIS 1, KAS2  gene FAB1  function Encodes a plastidic beta-ketoacyl-ACP synthase II, involved in fatty acid elongation from 16:0-ACP to 18:0-ACP. Homozygous knock-out mutants are embryo lethal, indicating early embryo development is sensitive to elevated 16:0.  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastid|GO:0009536|12148534|ISS  go_process fatty acid biosynthetic process|GO:0006633|12148534|IDA  go_process unsaturated fatty acid biosynthetic process|GO:0006636|12068126|TAS  go_function fatty-acid synthase activity|GO:0004312||ISS  go_function 3-oxoacyl-[acyl-carrier-protein] synthase activity|GO:0004315|12148534|IDA  go_function 3-oxoacyl-[acyl-carrier-protein] synthase activity|GO:0004315|12148534|IMP  product FAB1 (FATTY ACID BIOSYNTHESIS 1); 3-oxoacyl-[acyl-carrier-protein] synthase/ fatty-acid synthase  note FATTY ACID BIOSYNTHESIS 1 (FAB1); FUNCTIONS IN: fatty-acid synthase activity, 3-oxoacyl-[acyl-carrier-protein] synthase activity; INVOLVED IN: fatty acid biosynthetic process, unsaturated fatty acid biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Beta-ketoacyl synthase (InterPro:IPR000794), Thiolase-like (InterPro:IPR016039), Beta-ketoacyl synthase, C-terminal (InterPro:IPR014031), 3-oxoacyl-[acyl-carrier-protein] synthase 2 (InterPro:IPR017568), Beta-ketoacyl synthase, N-terminal (InterPro:IPR014030), Thiolase-like, subgroup (InterPro:IPR016038), Beta-ketoacyl synthase, active site (InterPro:IPR018201); BEST Arabidopsis thaliana protein match is: KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I); catalytic/ fatty-acid synthase/ transferase, transferring acyl groups other than amino-acyl groups (TAIR:AT5G46290.1); Has 19713 Blast hits to 17933 proteins in 2058 species: Archae - 3; Bacteria - 11722; Metazoa - 445; Fungi - 1737; Plants - 210; Viruses - 0; Other Eukaryotes - 5596 (source: NCBI BLink).  protein_id AT1G74960.2p  transcript_id AT1G74960.2  protein_id AT1G74960.2p  transcript_id AT1G74960.2  
At1g74970	chr1:028158864	0.0	C/28158864-28159202,28157761-28158048	AT1G74970.1  CDS  gene_syn F25A4.6, F25A4_6, RIBOSOMAL PROTEIN S9, RPS9, TWN3  gene RPS9  function ribosomal protein S9, nuclear encoded component of the chloroplast ribosome  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component plastid small ribosomal subunit|GO:0000312|10359080|IDA  go_component cytosolic small ribosomal subunit|GO:0022627||ISS  go_process translation|GO:0006412|10359080|TAS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735|10359080|ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product RPS9 (RIBOSOMAL PROTEIN S9); structural constituent of ribosome  note RIBOSOMAL PROTEIN S9 (RPS9); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S9 (InterPro:IPR000754), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721); BEST Arabidopsis thaliana protein match is: ribosomal protein S9 family protein (TAIR:AT3G49080.1); Has 5346 Blast hits to 5345 proteins in 1579 species: Archae - 130; Bacteria - 2906; Metazoa - 86; Fungi - 84; Plants - 111; Viruses - 0; Other Eukaryotes - 2029 (source: NCBI BLink).  protein_id AT1G74970.1p  transcript_id AT1G74970.1  protein_id AT1G74970.1p  transcript_id AT1G74970.1  
At1g74990	chr1:028159837	0.0	C/28159837-28160250	AT1G74990.1  CDS  gene_syn F25A4.5, F25A4_5  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, 4 leaf senescence stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G19310.1); Has 3257 Blast hits to 3250 proteins in 235 species: Archae - 0; Bacteria - 0; Metazoa - 2171; Fungi - 292; Plants - 408; Viruses - 15; Other Eukaryotes - 371 (source: NCBI BLink).  protein_id AT1G74990.1p  transcript_id AT1G74990.1  protein_id AT1G74990.1p  transcript_id AT1G74990.1  
At1g75000	chr1:028163650	0.0	W/28163650-28164189,28164281-28164586	AT1G75000.1  CDS  gene_syn F25A4.4, F25A4_4  go_component integral to membrane|GO:0016021||IEA  go_component integral to membrane|GO:0016021||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product GNS1/SUR4 membrane family protein  note GNS1/SUR4 membrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: GNS1/SUR4 membrane protein (InterPro:IPR002076); BEST Arabidopsis thaliana protein match is: GNS1/SUR4 membrane family protein (TAIR:AT4G36830.1); Has 148 Blast hits to 148 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 51; Fungi - 38; Plants - 38; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G75000.1p  transcript_id AT1G75000.1  protein_id AT1G75000.1p  transcript_id AT1G75000.1  
At1g75010	chr1:028169625	0.0	C/28169625-28169941,28169341-28169399,28169115-28169179,28168728-28168862,28168273-28168321,28168049-28168161,28167898-28167969,28167643-28167753,28167119-28167297,28166581-28166897,28166094-28166428,28165790-28165894,28165537-28165674,28165151-28165317,28164994-28165057	AT1G75010.1  CDS  gene_syn ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3, ARC3, F25A4.3, F25A4_3  gene ARC3  function Encodes ARC3 (Accumulation and Replication of Chloroplast 3), a chloroplast division factor functioning in the initiation of chloroplast division. ARC3 is a chimera of the prokaryotic FtsZ and part of the eukaryotic phosphatidylinositol-4-phosphate 5-kinase (PIP5K). Located on the outer surface of the chloroplast in a ring-like structure at the early stage of chloroplast division. The arc3 mutant has a small number of abnormally large chloroplasts in the cell.  go_component chloroplast stroma|GO:0009570|17304239|IDA  go_process plastid organization|GO:0009657|12232072|IMP  go_process chloroplast fission|GO:0010020|17304239|IMP  product ARC3 (ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3)  note ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 (ARC3); INVOLVED IN: chloroplast fission, plastid organization; LOCATED IN: chloroplast stroma; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tubulin/FtsZ, GTPase (InterPro:IPR003008), MORN motif (InterPro:IPR003409); BEST Arabidopsis thaliana protein match is: phosphatidylinositol-4-phosphate 5-kinase family protein (TAIR:AT1G60890.1); Has 19047 Blast hits to 8363 proteins in 1446 species: Archae - 50; Bacteria - 4392; Metazoa - 1419; Fungi - 55; Plants - 771; Viruses - 0; Other Eukaryotes - 12360 (source: NCBI BLink).  protein_id AT1G75010.1p  transcript_id AT1G75010.1  protein_id AT1G75010.1p  transcript_id AT1G75010.1  
At1g75020	chr1:028171779	0.0	W/28171779-28172347,28172599-28172729,28172921-28173357	AT1G75020.1  CDS  gene_syn F25A4.2, F25A4_2, LPAT4, LYSOPHOSPHATIDYL ACYLTRANSFERASE 4  gene LPAT4  go_process metabolic process|GO:0008152||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_process metabolic process|GO:0008152||ISS  go_function acyltransferase activity|GO:0008415||ISS  product LPAT4 (LYSOPHOSPHATIDYL ACYLTRANSFERASE 4); acyltransferase  note LYSOPHOSPHATIDYL ACYLTRANSFERASE 4 (LPAT4); FUNCTIONS IN: acyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: LPAT5; acyltransferase (TAIR:AT3G18850.4); Has 1540 Blast hits to 1538 proteins in 412 species: Archae - 0; Bacteria - 617; Metazoa - 462; Fungi - 118; Plants - 77; Viruses - 4; Other Eukaryotes - 262 (source: NCBI BLink).  protein_id AT1G75020.1p  transcript_id AT1G75020.1  protein_id AT1G75020.1p  transcript_id AT1G75020.1  
At1g75020	chr1:028171779	0.0	W/28171779-28172347,28172599-28172729,28172921-28173357	AT1G75020.2  CDS  gene_syn F25A4.2, F25A4_2, LPAT4, LYSOPHOSPHATIDYL ACYLTRANSFERASE 4  gene LPAT4  go_process metabolic process|GO:0008152||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_process metabolic process|GO:0008152||ISS  go_function acyltransferase activity|GO:0008415||ISS  product LPAT4 (LYSOPHOSPHATIDYL ACYLTRANSFERASE 4); acyltransferase  note LYSOPHOSPHATIDYL ACYLTRANSFERASE 4 (LPAT4); FUNCTIONS IN: acyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: LPAT5; acyltransferase (TAIR:AT3G18850.4); Has 1540 Blast hits to 1538 proteins in 412 species: Archae - 0; Bacteria - 617; Metazoa - 462; Fungi - 118; Plants - 77; Viruses - 4; Other Eukaryotes - 262 (source: NCBI BLink).  protein_id AT1G75020.2p  transcript_id AT1G75020.2  protein_id AT1G75020.2p  transcript_id AT1G75020.2  
At1g75030	chr1:028174418	0.0	W/28174418-28174466,28174564-28175255	AT1G75030.1  CDS  gene_syn ARABIDOPSIS THAUMATIN-LIKE PROTEIN 3, ATLP-3  gene ATLP-3  function encodes a PR5-like protein  go_component endomembrane system|GO:0012505||IEA  go_process response to other organism|GO:0051707||ISS  go_function molecular_function|GO:0003674||ND  product ATLP-3  note ATLP-3; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75050.1); Has 1059 Blast hits to 1046 proteins in 143 species: Archae - 0; Bacteria - 18; Metazoa - 45; Fungi - 45; Plants - 940; Viruses - 2; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G75030.1p  transcript_id AT1G75030.1  protein_id AT1G75030.1p  transcript_id AT1G75030.1  
At1g75040	chr1:028177754	0.0	W/28177754-28177802,28178061-28178731	AT1G75040.1  CDS  gene_syn PATHOGENESIS-RELATED GENE 5, PATHOGENESIS-RELATED PROTEIN 5, PR-5, PR5  gene PR5  function Thaumatin-like protein involved in response to pathogens. mRNA level of the PR-5 gene (At1g75040)is significantly changed after cutting the inflorescence stem indicating the existence of a network of signal transducing pathways as other stress-regulated genes (At5g01410, At3g17800, At1g29930)do not response to the treatment.  go_component cell wall|GO:0005618|15593128|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process systemic acquired resistance|GO:0009627|1392589|IEP  go_process systemic acquired resistance|GO:0009627|17419843|IEP  go_process response to UV-B|GO:0010224|15474373|IGI  go_process regulation of anthocyanin biosynthetic process|GO:0031540|15993620|IEP  go_process response to other organism|GO:0051707||ISS  go_function molecular_function|GO:0003674||ND  product PR5 (PATHOGENESIS-RELATED GENE 5)  note PATHOGENESIS-RELATED GENE 5 (PR5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to UV-B, systemic acquired resistance, response to other organism, regulation of anthocyanin biosynthetic process; LOCATED IN: apoplast, cell wall, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75050.1); Has 1063 Blast hits to 1049 proteins in 143 species: Archae - 0; Bacteria - 18; Metazoa - 48; Fungi - 51; Plants - 935; Viruses - 4; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G75040.1p  transcript_id AT1G75040.1  protein_id AT1G75040.1p  transcript_id AT1G75040.1  
At1g75050	chr1:028180116	0.0	W/28180116-28180164,28180371-28181062	AT1G75050.1  CDS  gene_syn F9E10.10, F9E10_10  go_component endomembrane system|GO:0012505||IEA  go_process response to other organism|GO:0051707||ISS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: ATLP-3 (TAIR:AT1G75030.1); Has 1070 Blast hits to 1056 proteins in 144 species: Archae - 0; Bacteria - 18; Metazoa - 48; Fungi - 48; Plants - 944; Viruses - 4; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G75050.1p  transcript_id AT1G75050.1  protein_id AT1G75050.1p  transcript_id AT1G75050.1  
At1g75060	chr1:028183061	0.0	C/28183061-28183285,28182205-28182337,28181973-28182112,28181825-28181884,28181659-28181727,28181481-28181579	AT1G75060.2  CDS  gene_syn F9E10.9, F9E10_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19330.2); Has 52 Blast hits to 52 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G75060.2p  transcript_id AT1G75060.2  protein_id AT1G75060.2p  transcript_id AT1G75060.2  
At1g75060	chr1:028183061	0.0	C/28183061-28183285,28182205-28182337,28181973-28182112,28181825-28181887,28181659-28181727,28181481-28181579	AT1G75060.1  CDS  gene_syn F9E10.9, F9E10_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19330.2); Has 52 Blast hits to 52 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G75060.1p  transcript_id AT1G75060.1  protein_id AT1G75060.1p  transcript_id AT1G75060.1  
At1g75070	chr1:028184532	0.0	W/28184532-28184603	AT1G75070.1  tRNA  gene_syn 60042.TRNA-ASP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asp (anticodon: GTC)  transcript_id AT1G75070.1  
At1g75080	chr1:028185709	0.0	W/28185709-28185975,28186320-28187063	AT1G75080.1  CDS  gene_syn BRASSINAZOLE-RESISTANT 1, BZR1, F9E10.7, F9E10_7  gene BZR1  function Encodes a positive regulator of the brassinosteroid (BR) signalling pathway that mediates both downstream BR responses and negative feedback regulation of BR biosynthesis. There is evidence for phosphorylation-dependent nucleocytoplasmic shuttling of BZR1. GSK3-like kinases (including BIN2), 14-3-3 proteins, and the phosphatase BSU1 seem to participate in this process. Phosphorylation also appears to affect BZR1 s transcriptional activities.  go_component nucleus|GO:0005634|11970900|IDA  go_component cytosol|GO:0005829|17873094|IDA  go_process brassinosteroid mediated signaling|GO:0009742|11970900|IMP  go_function DNA binding|GO:0003677|15681342|IDA  go_function transcription repressor activity|GO:0016564|15681342|IDA  go_function transcription regulator activity|GO:0030528|11970900|TAS  product BZR1 (BRASSINAZOLE-RESISTANT 1); DNA binding / transcription regulator/ transcription repressor  note BRASSINAZOLE-RESISTANT 1 (BZR1); FUNCTIONS IN: transcription repressor activity, transcription regulator activity, DNA binding; INVOLVED IN: brassinosteroid mediated signaling; LOCATED IN: cytosol, nucleus; CONTAINS InterPro DOMAIN/s: BZR1, transcriptional repressor (InterPro:IPR008540); BEST Arabidopsis thaliana protein match is: BES1 (BRI1-EMS-SUPPRESSOR 1); protein binding / transcription factor/ transcription regulator (TAIR:AT1G19350.6); Has 2857 Blast hits to 484 proteins in 89 species: Archae - 0; Bacteria - 16; Metazoa - 190; Fungi - 133; Plants - 178; Viruses - 0; Other Eukaryotes - 2340 (source: NCBI BLink).  protein_id AT1G75080.1p  transcript_id AT1G75080.1  protein_id AT1G75080.1p  transcript_id AT1G75080.1  
At1g75080	chr1:028185709	0.0	W/28185709-28185975,28186320-28187063	AT1G75080.2  CDS  gene_syn BRASSINAZOLE-RESISTANT 1, BZR1, F9E10.7, F9E10_7  gene BZR1  function Encodes a positive regulator of the brassinosteroid (BR) signalling pathway that mediates both downstream BR responses and negative feedback regulation of BR biosynthesis. There is evidence for phosphorylation-dependent nucleocytoplasmic shuttling of BZR1. GSK3-like kinases (including BIN2), 14-3-3 proteins, and the phosphatase BSU1 seem to participate in this process. Phosphorylation also appears to affect BZR1 s transcriptional activities.  go_component nucleus|GO:0005634|11970900|IDA  go_component cytosol|GO:0005829|17873094|IDA  go_process brassinosteroid mediated signaling|GO:0009742|11970900|IMP  go_function DNA binding|GO:0003677|15681342|IDA  go_function transcription repressor activity|GO:0016564|15681342|IDA  go_function transcription regulator activity|GO:0030528|11970900|TAS  product BZR1 (BRASSINAZOLE-RESISTANT 1); DNA binding / transcription regulator/ transcription repressor  note BRASSINAZOLE-RESISTANT 1 (BZR1); FUNCTIONS IN: transcription repressor activity, transcription regulator activity, DNA binding; INVOLVED IN: brassinosteroid mediated signaling; LOCATED IN: cytosol, nucleus; CONTAINS InterPro DOMAIN/s: BZR1, transcriptional repressor (InterPro:IPR008540); BEST Arabidopsis thaliana protein match is: BES1 (BRI1-EMS-SUPPRESSOR 1); protein binding / transcription factor/ transcription regulator (TAIR:AT1G19350.6); Has 2857 Blast hits to 484 proteins in 89 species: Archae - 0; Bacteria - 16; Metazoa - 190; Fungi - 133; Plants - 178; Viruses - 0; Other Eukaryotes - 2340 (source: NCBI BLink).  protein_id AT1G75080.2p  transcript_id AT1G75080.2  protein_id AT1G75080.2p  transcript_id AT1G75080.2  
At1g75090	chr1:028189228	0.0	C/28189228-28189612,28188267-28188408,28188047-28188188,28187647-28187967	AT1G75090.1  CDS  gene_syn F9E10.6, F9E10_6  go_process DNA repair|GO:0006281||IEA  go_process base-excision repair|GO:0006284||IEA  go_function catalytic activity|GO:0003824||IEA  go_function DNA-3-methyladenine glycosylase I activity|GO:0008725||IEA  go_process DNA repair|GO:0006281||ISS  go_function DNA-3-methyladenine glycosylase I activity|GO:0008725||ISS  product methyladenine glycosylase family protein  note methyladenine glycosylase family protein; FUNCTIONS IN: DNA-3-methyladenine glycosylase I activity, catalytic activity; INVOLVED IN: DNA repair, base-excision repair; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Methyladenine glycosylase (InterPro:IPR005019); BEST Arabidopsis thaliana protein match is: methyladenine glycosylase family protein (TAIR:AT5G57970.2); Has 1973 Blast hits to 1973 proteins in 804 species: Archae - 7; Bacteria - 1552; Metazoa - 5; Fungi - 2; Plants - 83; Viruses - 0; Other Eukaryotes - 324 (source: NCBI BLink).  protein_id AT1G75090.1p  transcript_id AT1G75090.1  protein_id AT1G75090.1p  transcript_id AT1G75090.1  
At1g75100	chr1:028193360	0.0	C/28193360-28193769,28192655-28193280,28192172-28192566,28191978-28192092,28191851-28191900,28191689-28191754,28191514-28191591,28191247-28191423,28191108-28191146	AT1G75100.1  CDS  gene_syn F9E10.5, F9E10_5, J-DOMAIN PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1, JAC1  gene JAC1  function Contains a J-domain at the C-terminus which is similar to the J-domain of auxilin, a clathrin-uncoating factor in cow, yeast and worm. Arabidopsis contains 6 other proteins similar to auxilin. Expressed in leaves and stems, but not in roots. Localized in the cytoplasm. Required for the chloroplast accumulation response, but not for the avoidance response. No molecular function known.  go_function heat shock protein binding|GO:0031072||IEA  go_component cytoplasm|GO:0005737|16113208|IDA  go_process chloroplast avoidance movement|GO:0009903|16113208|IMP  go_process chloroplast accumulation movement|GO:0009904|16113208|IMP  product JAC1 (J-DOMAIN PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1); heat shock protein binding  note J-DOMAIN PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1 (JAC1); FUNCTIONS IN: heat shock protein binding; INVOLVED IN: chloroplast avoidance movement, chloroplast accumulation movement; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: AUL1; heat shock protein binding (TAIR:AT1G75310.1); Has 2917 Blast hits to 1865 proteins in 218 species: Archae - 0; Bacteria - 137; Metazoa - 1100; Fungi - 342; Plants - 170; Viruses - 10; Other Eukaryotes - 1158 (source: NCBI BLink).  protein_id AT1G75100.1p  transcript_id AT1G75100.1  protein_id AT1G75100.1p  transcript_id AT1G75100.1  
At1g75110	chr1:028195712	0.0	C/28195712-28195885,28194348-28195460	AT1G75110.1  CDS  gene_syn F9E10.4, F9E10_4, REDUCED RESIDUAL ARABINOSE 2, RRA2  gene RRA2  go_component endoplasmic reticulum|GO:0005783||IEA  product RRA2 (REDUCED RESIDUAL ARABINOSE 2)  note REDUCED RESIDUAL ARABINOSE 2 (RRA2); LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19360.1); Has 163 Blast hits to 160 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 152; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G75110.1p  transcript_id AT1G75110.1  protein_id AT1G75110.1p  transcript_id AT1G75110.1  
At1g75120	chr1:028198522	0.0	C/28198522-28198656,28197022-28198095	AT1G75120.1  CDS  gene_syn F9E10.3, F9E10_3, REDUCED RESIDUAL ARABINOSE 1, RRA1  gene RRA1  go_component endoplasmic reticulum|GO:0005783||IEA  go_component endomembrane system|GO:0012505||IEA  product RRA1 (REDUCED RESIDUAL ARABINOSE 1)  note REDUCED RESIDUAL ARABINOSE 1 (RRA1); LOCATED IN: endomembrane system, endoplasmic reticulum; EXPRESSED IN: meristem; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: RRA2 (REDUCED RESIDUAL ARABINOSE 2) (TAIR:AT1G75110.1); Has 153 Blast hits to 151 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G75120.1p  transcript_id AT1G75120.1  protein_id AT1G75120.1p  transcript_id AT1G75120.1  
At1g75130	chr1:028201423	0.0	C/28201423-28201911,28201024-28201268,28200568-28200931,28200073-28200492	AT1G75130.1  CDS  gene_syn CYP721A1, CYTOCHROME P450, FAMILY 721, SUBFAMILY A, POLYPEPTIDE 1, F22H5.19  gene CYP721A1  function member of CYP721A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process biological_process|GO:0008150||ND  go_function oxygen binding|GO:0019825||ISS  product CYP721A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP721A1; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: BAS1 (PHYB ACTIVATION TAGGED SUPPRESSOR 1); oxygen binding / steroid hydroxylase (TAIR:AT2G26710.1); Has 22123 Blast hits to 22065 proteins in 1148 species: Archae - 49; Bacteria - 2399; Metazoa - 9847; Fungi - 3901; Plants - 4807; Viruses - 3; Other Eukaryotes - 1117 (source: NCBI BLink).  protein_id AT1G75130.1p  transcript_id AT1G75130.1  protein_id AT1G75130.1p  transcript_id AT1G75130.1  
At1g75140	chr1:028202166	0.0	C/28202166-28204019	AT1G75140.1  CDS  gene_syn F22H5.14, F22H5_14  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  product unknown protein  note unknown protein; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19370.1); Has 29 Blast hits to 29 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G75140.1p  transcript_id AT1G75140.1  protein_id AT1G75140.1p  transcript_id AT1G75140.1  
At1g75150	chr1:028207871	0.0	C/28207871-28208512,28207709-28207763,28207522-28207621,28207225-28207432,28206743-28206882,28205880-28206486,28205631-28205733,28205477-28205529,28205196-28205348,28204858-28205121,28204709-28204738	AT1G75150.1  CDS  gene_syn F22H5.12, F22H5_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; Has 35053 Blast hits to 21510 proteins in 845 species: Archae - 80; Bacteria - 3185; Metazoa - 14415; Fungi - 4937; Plants - 1429; Viruses - 311; Other Eukaryotes - 10696 (source: NCBI BLink).  protein_id AT1G75150.1p  transcript_id AT1G75150.1  protein_id AT1G75150.1p  transcript_id AT1G75150.1  
At1g75160	chr1:028209534	0.0	W/28209534-28209878,28210323-28210679,28211139-28211624	AT1G75160.1  CDS  gene_syn F22H5.11, F22H5_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF620 (InterPro:IPR006873); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66740.1); Has 109 Blast hits to 108 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G75160.1p  transcript_id AT1G75160.1  protein_id AT1G75160.1p  transcript_id AT1G75160.1  
At1g75163	chr1:028212395	0.0	W/28212395-28212474	AT1G75163.1  snoRNA  gene_syn 60726.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT1G75163.1  
At1g75166	chr1:028212518	0.0	W/28212518-28212603	AT1G75166.1  snoRNA  gene_syn 60726.SNORNA00002  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT1G75166.1  
At1g75170	chr1:028214405	0.0	W/28214405-28214473,28214571-28214747,28214830-28214928,28215013-28215258,28215387-28215686	AT1G75170.1  CDS  gene_syn F22H5.20, F22H5_20  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  note SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT4G36640.1); Has 1901 Blast hits to 1901 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 731; Fungi - 478; Plants - 462; Viruses - 0; Other Eukaryotes - 230 (source: NCBI BLink).  protein_id AT1G75170.1p  transcript_id AT1G75170.1  protein_id AT1G75170.1p  transcript_id AT1G75170.1  
At1g75170	chr1:028214405	0.0	W/28214405-28214473,28214571-28214747,28214830-28214928,28215013-28215258,28215387-28215686	AT1G75170.2  CDS  gene_syn F22H5.20, F22H5_20  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  note SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT4G36640.1); Has 1901 Blast hits to 1901 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 731; Fungi - 478; Plants - 462; Viruses - 0; Other Eukaryotes - 230 (source: NCBI BLink).  protein_id AT1G75170.2p  transcript_id AT1G75170.2  protein_id AT1G75170.2p  transcript_id AT1G75170.2  
At1g75170	chr1:028214744	0.0	W/28214744-28214747,28214837-28214928,28215013-28215258,28215387-28215686	AT1G75170.3  CDS  gene_syn F22H5.20, F22H5_20  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  note SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT4G36640.2); Has 1269 Blast hits to 1269 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 378; Fungi - 389; Plants - 336; Viruses - 0; Other Eukaryotes - 166 (source: NCBI BLink).  protein_id AT1G75170.3p  transcript_id AT1G75170.3  protein_id AT1G75170.3p  transcript_id AT1G75170.3  
At1g75180	chr1:028217195	0.0	C/28217195-28217911,28216150-28216380	AT1G75180.1  CDS  gene_syn F22H5.9, F22H5_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19400.2); Has 70 Blast hits to 70 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G75180.1p  transcript_id AT1G75180.1  protein_id AT1G75180.1p  transcript_id AT1G75180.1  
At1g75180	chr1:028217195	0.0	C/28217195-28217911,28216150-28216380	AT1G75180.3  CDS  gene_syn F22H5.9, F22H5_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19400.2); Has 70 Blast hits to 70 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G75180.3p  transcript_id AT1G75180.3  protein_id AT1G75180.3p  transcript_id AT1G75180.3  
At1g75180	chr1:028217195	0.0	C/28217195-28217911,28216772-28216786	AT1G75180.2  CDS  gene_syn F22H5.9, F22H5_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19400.2); Has 61 Blast hits to 61 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G75180.2p  transcript_id AT1G75180.2  protein_id AT1G75180.2p  transcript_id AT1G75180.2  
At1g75190	chr1:028219598	0.0	W/28219598-28219804,28219916-28219993	AT1G75190.2  CDS  gene_syn F22H5.8, F22H5_8  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1012 Blast hits to 663 proteins in 74 species: Archae - 0; Bacteria - 8; Metazoa - 778; Fungi - 37; Plants - 29; Viruses - 8; Other Eukaryotes - 152 (source: NCBI BLink).  protein_id AT1G75190.2p  transcript_id AT1G75190.2  protein_id AT1G75190.2p  transcript_id AT1G75190.2  
At1g75190	chr1:028219598	0.0	W/28219598-28219993	AT1G75190.1  CDS  gene_syn F22H5.8, F22H5_8  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 9739 Blast hits to 4019 proteins in 241 species: Archae - 15; Bacteria - 128; Metazoa - 5787; Fungi - 540; Plants - 188; Viruses - 208; Other Eukaryotes - 2873 (source: NCBI BLink).  protein_id AT1G75190.1p  transcript_id AT1G75190.1  protein_id AT1G75190.1p  transcript_id AT1G75190.1  
At1g75200	chr1:028222749	0.0	C/28222749-28223597,28222547-28222662,28222272-28222447,28221822-28222012,28221653-28221739,28221399-28221556,28221096-28221306,28220849-28221004	AT1G75200.1  CDS  gene_syn F22H5.13, F22H5_13  go_function catalytic activity|GO:0003824||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function FMN binding|GO:0010181||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function iron-sulfur cluster binding|GO:0051536||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product flavodoxin family protein / radical SAM domain-containing protein  note flavodoxin family protein / radical SAM domain-containing protein; FUNCTIONS IN: in 6 functions; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Flavodoxin-like (InterPro:IPR001094), Flavodoxin/nitric oxide synthase (InterPro:IPR008254), Radical SAM (InterPro:IPR007197), Wyosine base formation (InterPro:IPR013917); BEST Arabidopsis thaliana protein match is: ATR2 (ARABIDOPSIS P450 REDUCTASE 2); NADPH-hemoprotein reductase (TAIR:AT4G30210.2); Has 2213 Blast hits to 2197 proteins in 587 species: Archae - 120; Bacteria - 563; Metazoa - 592; Fungi - 399; Plants - 128; Viruses - 0; Other Eukaryotes - 411 (source: NCBI BLink).  protein_id AT1G75200.1p  transcript_id AT1G75200.1  protein_id AT1G75200.1p  transcript_id AT1G75200.1  
At1g75210	chr1:028223990	0.0	W/28223990-28224269,28224998-28225317,28225405-28225482,28225550-28225770,28225952-28226044,28226166-28226249,28226572-28226688,28226864-28226969,28227062-28227178,28227336-28227393,28227654-28227730,28227979-28228049,28228171-28228231,28228313-28228372,28228475-28228537,28228629-28228751	AT1G75210.1  CDS  gene_syn F22H5.7, F22H5_7  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function 5 -nucleotidase activity|GO:0008253||ISS  product 5  nucleotidase family protein  note 5  nucleotidase family protein; FUNCTIONS IN: 5 -nucleotidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IG, 5&apos;-nucleotidase (InterPro:IPR008380), Purine 5&apos;-nucleotidase (InterPro:IPR016695); BEST Arabidopsis thaliana protein match is: 5  nucleotidase family protein (TAIR:AT5G48960.1); Has 513 Blast hits to 512 proteins in 83 species: Archae - 0; Bacteria - 34; Metazoa - 386; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT1G75210.1p  transcript_id AT1G75210.1  protein_id AT1G75210.1p  transcript_id AT1G75210.1  
At1g75220	chr1:028232412	0.0	C/28232412-28232606,28232027-28232089,28231847-28231936,28231687-28231746,28231535-28231600,28231391-28231456,28231223-28231298,28231065-28231129,28230843-28230935,28230671-28230751,28230489-28230573,28230300-28230409,28230138-28230197,28229977-28230042,28229839-28229898,28229620-28229734,28229412-28229524	AT1G75220.1  CDS  gene_syn F22H5.6, F22H5_6  go_component plasma membrane|GO:0005886|17151019|IDA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product integral membrane protein, putative  note integral membrane protein, putative; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: integral membrane protein, putative / sugar transporter family protein (TAIR:AT1G19450.1); Has 20404 Blast hits to 19903 proteins in 1300 species: Archae - 314; Bacteria - 8577; Metazoa - 4711; Fungi - 4185; Plants - 1437; Viruses - 2; Other Eukaryotes - 1178 (source: NCBI BLink).  protein_id AT1G75220.1p  transcript_id AT1G75220.1  protein_id AT1G75220.1p  transcript_id AT1G75220.1  
At1g75230	chr1:028234444	0.0	W/28234444-28235600,28236434-28236452	AT1G75230.1  CDS  gene_syn F22H5.5, F22H5_5  go_process DNA repair|GO:0006281||IEA  go_process base-excision repair|GO:0006284||IEA  go_function catalytic activity|GO:0003824||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_process base-excision repair|GO:0006284||ISS  product HhH-GPD base excision DNA repair family protein  note HhH-GPD base excision DNA repair family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: HhH-GPD base excision DNA repair family protein (TAIR:AT1G19480.1); Has 3501 Blast hits to 3498 proteins in 646 species: Archae - 35; Bacteria - 1353; Metazoa - 14; Fungi - 96; Plants - 50; Viruses - 0; Other Eukaryotes - 1953 (source: NCBI BLink).  protein_id AT1G75230.1p  transcript_id AT1G75230.1  protein_id AT1G75230.1p  transcript_id AT1G75230.1  
At1g75230	chr1:028234444	0.0	W/28234444-28235628	AT1G75230.2  CDS  gene_syn F22H5.5, F22H5_5  go_process DNA repair|GO:0006281||IEA  go_process base-excision repair|GO:0006284||IEA  go_function catalytic activity|GO:0003824||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_process base-excision repair|GO:0006284||ISS  product HhH-GPD base excision DNA repair family protein  note HhH-GPD base excision DNA repair family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: HhH-GPD base excision DNA repair family protein (TAIR:AT1G19480.2); Has 3501 Blast hits to 3498 proteins in 646 species: Archae - 35; Bacteria - 1353; Metazoa - 14; Fungi - 96; Plants - 50; Viruses - 0; Other Eukaryotes - 1953 (source: NCBI BLink).  protein_id AT1G75230.2p  transcript_id AT1G75230.2  protein_id AT1G75230.2p  transcript_id AT1G75230.2  
At1g75240	chr1:028241576	0.0	W/28241576-28242505	AT1G75240.1  CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 33, AtHB33, F22H5.4, F22H5_4  gene AtHB33  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_function DNA binding|GO:0003677|16428600|IPI  go_function transcription factor activity|GO:0003700||ISS  product AtHB33 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 33); DNA binding / transcription factor  note ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 33 (AtHB33); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein Cys/His-rich dimerisation region (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: AtHB24 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 24); DNA binding / transcription factor (TAIR:AT2G18350.1); Has 457 Blast hits to 443 proteins in 69 species: Archae - 0; Bacteria - 5; Metazoa - 111; Fungi - 10; Plants - 311; Viruses - 3; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G75240.1p  transcript_id AT1G75240.1  protein_id AT1G75240.1p  transcript_id AT1G75240.1  
At1g75250	chr1:028245073	0.0	C/28245073-28245453	AT1G75250.1  CDS  gene_syn ARABIDOPSIS RAD-LIKE 6, ATRL6, F22H5.3, F22H5_3  gene ATRL6  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ATRL6 (ARABIDOPSIS RAD-LIKE 6); transcription factor  note ARABIDOPSIS RAD-LIKE 6 (ATRL6); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: ATRL5 (ARABIDOPSIS RAD-LIKE 5); DNA binding / transcription factor (TAIR:AT1G19510.1); Has 374 Blast hits to 374 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 0; Plants - 273; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G75250.1p  transcript_id AT1G75250.1  protein_id AT1G75250.1p  transcript_id AT1G75250.1  
At1g75250	chr1:028245185	0.0	C/28245185-28245453,28244463-28244487	AT1G75250.2  CDS  gene_syn ARABIDOPSIS RAD-LIKE 6, ATRL6, F22H5.3, F22H5_3  gene ATRL6  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ATRL6 (ARABIDOPSIS RAD-LIKE 6); transcription factor  note ARABIDOPSIS RAD-LIKE 6 (ATRL6); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: ATRL5 (ARABIDOPSIS RAD-LIKE 5); DNA binding / transcription factor (TAIR:AT1G19510.1); Has 374 Blast hits to 374 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 0; Plants - 273; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G75250.2p  transcript_id AT1G75250.2  protein_id AT1G75250.2p  transcript_id AT1G75250.2  
At1g75260	chr1:028247854	0.0	W/28247854-28249395	AT1G75260.1  CDS  go_component chloroplast|GO:0009507||IEA  go_function oxidoreductase activity, acting on NADH or NADPH|GO:0016651||ISS  product oxidoreductase, acting on NADH or NADPH  note oxidoreductase, acting on NADH or NADPH; FUNCTIONS IN: oxidoreductase activity, acting on NADH or NADPH; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G22795.1); Has 9000 Blast hits to 6650 proteins in 578 species: Archae - 17; Bacteria - 793; Metazoa - 3741; Fungi - 1063; Plants - 304; Viruses - 64; Other Eukaryotes - 3018 (source: NCBI BLink).  protein_id AT1G75260.1p  transcript_id AT1G75260.1  protein_id AT1G75260.1p  transcript_id AT1G75260.1  
At1g75261	chr1:028249567	0.0	W/28249567-28250016	AT1G75261.1  pseudogenic_transcript  pseudo  function Pseudogene of AT4G39230; isoflavone reductase, putative  
At1g75270	chr1:028251180	0.0	C/28251180-28251237,28250938-28251028,28250255-28250747	AT1G75270.1  CDS  gene_syn DEHYDROASCORBATE REDUCTASE 2, DHAR2, F22H5.1, F22H5_1  gene DHAR2  go_component plasma membrane|GO:0005886|17644812|IDA  go_function glutathione binding|GO:0043295|15159623|IDA  go_function glutathione dehydrogenase (ascorbate) activity|GO:0045174|12077129|IDA  go_function glutathione dehydrogenase (ascorbate) activity|GO:0045174||ISS  product DHAR2 (DEHYDROASCORBATE REDUCTASE 2); glutathione binding / glutathione dehydrogenase (ascorbate)  note DEHYDROASCORBATE REDUCTASE 2 (DHAR2); FUNCTIONS IN: glutathione binding, glutathione dehydrogenase (ascorbate) activity; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: DHAR1 (dehydroascorbate reductase); copper ion binding / glutathione dehydrogenase (ascorbate) (TAIR:AT1G19570.1); Has 3494 Blast hits to 3457 proteins in 719 species: Archae - 0; Bacteria - 1289; Metazoa - 927; Fungi - 138; Plants - 445; Viruses - 0; Other Eukaryotes - 695 (source: NCBI BLink).  protein_id AT1G75270.1p  transcript_id AT1G75270.1  protein_id AT1G75270.1p  transcript_id AT1G75270.1  
At1g75280	chr1:028252030	0.0	W/28252030-28252215,28252300-28252434,28252587-28252830,28252907-28253110,28253192-28253355	AT1G75280.1  CDS  gene_syn F22H5.17, F22H5_17, P3  function isoflavone reductase, putative, identical to SP:P52577 Isoflavone reductase homolog P3 (EC 1.3.1.-) {Arabidopsis thaliana}; contains Pfam profile PF02716: isoflavone reductase. Involved in response to oxidative stress.  go_component plasma membrane|GO:0005886|17644812|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function transcription repressor activity|GO:0016564||IEA  go_process response to oxidative stress|GO:0006979|7592828|IEP  go_process response to oxidative stress|GO:0006979|7592828|IGI  go_process response to cyclopentenone|GO:0010583|18334669|IEP  product isoflavone reductase, putative  note isoflavone reductase, putative; FUNCTIONS IN: transcription repressor activity, binding, catalytic activity; INVOLVED IN: response to oxidative stress, response to cadmium ion, response to cyclopentenone; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: oxidoreductase, acting on NADH or NADPH (TAIR:AT1G75290.1); Has 1663 Blast hits to 1661 proteins in 397 species: Archae - 20; Bacteria - 672; Metazoa - 12; Fungi - 367; Plants - 393; Viruses - 7; Other Eukaryotes - 192 (source: NCBI BLink).  protein_id AT1G75280.1p  transcript_id AT1G75280.1  protein_id AT1G75280.1p  transcript_id AT1G75280.1  
At1g75290	chr1:028253890	0.0	W/28253890-28254075,28254157-28254291,28254374-28254617,28254689-28254892,28254986-28255173	AT1G75290.1  CDS  gene_syn F22H5.18, F22H5_18  function encodes a protein whose sequence is similar to an isoflavone reductase  go_process regulation of nitrogen utilization|GO:0006808||IEA  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity, acting on NADH or NADPH|GO:0016651|7592828|ISS  product oxidoreductase, acting on NADH or NADPH  note oxidoreductase, acting on NADH or NADPH; FUNCTIONS IN: oxidoreductase activity, acting on NADH or NADPH; INVOLVED IN: regulation of nitrogen utilization, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, sepal, flower, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: isoflavone reductase, putative (TAIR:AT1G75280.1); Has 1529 Blast hits to 1527 proteins in 369 species: Archae - 10; Bacteria - 595; Metazoa - 12; Fungi - 343; Plants - 381; Viruses - 7; Other Eukaryotes - 181 (source: NCBI BLink).  protein_id AT1G75290.1p  transcript_id AT1G75290.1  protein_id AT1G75290.1p  transcript_id AT1G75290.1  
At1g75295	chr1:028254366	0.0	C/28254366-28257112	AT1G75295.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G75290 and AT1G75300  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G75295.2  
At1g75295	chr1:028255327	0.0	C/28255327-28257139	AT1G75295.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G75290 and AT1G75300  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G75295.1  
At1g75295	chr1:028255438	0.0	C/28255438-28257151	AT1G75295.3  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G75290 and AT1G75300  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G75295.3  
At1g75300	chr1:028255552	0.0	W/28255552-28255737,28255813-28255947,28256080-28256365,28256455-28256658,28256770-28256927	AT1G75300.1  CDS  gene_syn F22H5.16, F22H5_16  function encodes a protein whose sequence is similar to an isoflavone reductase  go_process regulation of nitrogen utilization|GO:0006808||IEA  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity, acting on NADH or NADPH|GO:0016651|7592828|ISS  product isoflavone reductase, putative  note isoflavone reductase, putative; FUNCTIONS IN: oxidoreductase activity, acting on NADH or NADPH; INVOLVED IN: regulation of nitrogen utilization, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: isoflavone reductase, putative (TAIR:AT1G75280.1); Has 993 Blast hits to 990 proteins in 218 species: Archae - 3; Bacteria - 254; Metazoa - 0; Fungi - 292; Plants - 354; Viruses - 7; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT1G75300.1p  transcript_id AT1G75300.1  protein_id AT1G75300.1p  transcript_id AT1G75300.1  
At1g75310	chr1:028261004	0.0	W/28261004-28261368,28261588-28265089,28265181-28265229,28265313-28265374,28265470-28265535,28265635-28265724,28265814-28265990,28266089-28266124	AT1G75310.1  CDS  gene_syn AUL1, AUXIN-LIKE 1 PROTEIN  gene AUL1  go_function heat shock protein binding|GO:0031072||IEA  go_process protein folding|GO:0006457||ISS  product AUL1; heat shock protein binding  note AUL1; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: heat shock protein binding (TAIR:AT4G36520.1); Has 36839 Blast hits to 23716 proteins in 1353 species: Archae - 191; Bacteria - 5155; Metazoa - 16021; Fungi - 3671; Plants - 1398; Viruses - 305; Other Eukaryotes - 10098 (source: NCBI BLink).  protein_id AT1G75310.1p  transcript_id AT1G75310.1  protein_id AT1G75310.1p  transcript_id AT1G75310.1  
At1g75330	chr1:028268182	0.0	C/28268182-28268383,28267615-28267949,28267264-28267395,28266736-28267011,28266457-28266639	AT1G75330.1  CDS  gene_syn F1B16.13, F1B16_13, ORNITHINE CARBAMOYLTRANSFERASE, OTC  gene OTC  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process amino acid metabolic process|GO:0006520||IEA  go_function ornithine carbamoyltransferase activity|GO:0004585||IEA  go_function amino acid binding|GO:0016597||IEA  go_function carboxyl- or carbamoyltransferase activity|GO:0016743||IEA  go_process amino acid metabolic process|GO:0006520||ISS  go_function amino acid binding|GO:0016597||ISS  go_function carboxyl- or carbamoyltransferase activity|GO:0016743||ISS  product OTC (ORNITHINE CARBAMOYLTRANSFERASE); amino acid binding / carboxyl- or carbamoyltransferase/ ornithine carbamoyltransferase  note ORNITHINE CARBAMOYLTRANSFERASE (OTC); FUNCTIONS IN: amino acid binding, ornithine carbamoyltransferase activity, carboxyl- or carbamoyltransferase activity; INVOLVED IN: amino acid metabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding (InterPro:IPR006132), Aspartate/ornithine carbamoyltransferase (InterPro:IPR006130), Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region (InterPro:IPR006131), Ornithine carbamoyltransferase (InterPro:IPR002292); BEST Arabidopsis thaliana protein match is: aspartate carabmoyltransferase, chloroplast / aspartate transcarbamylase / ATCase (PYRB) (TAIR:AT3G20330.1); Has 11337 Blast hits to 11337 proteins in 1659 species: Archae - 346; Bacteria - 6031; Metazoa - 180; Fungi - 195; Plants - 66; Viruses - 6; Other Eukaryotes - 4513 (source: NCBI BLink).  protein_id AT1G75330.1p  transcript_id AT1G75330.1  protein_id AT1G75330.1p  transcript_id AT1G75330.1  
At1g75335	chr1:028268576	0.0	W/28268576-28268866	AT1G75335.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G60030.1); Has 7 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G75335.1p  transcript_id AT1G75335.1  protein_id AT1G75335.1p  transcript_id AT1G75335.1  
At1g75340	chr1:028271836	0.0	C/28271836-28271873,28271297-28271474,28271042-28271136,28270842-28270937,28270658-28270751,28270329-28270546,28270156-28270233,28269963-28270055,28269771-28269856,28269468-28269690,28269271-28269343,28269153-28269188	AT1G75340.1  CDS  gene_syn F1B16.12, F1B16_12  go_component mitochondrion|GO:0005739||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc finger (CCCH-type) family protein  note zinc finger (CCCH-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: EMB2766 (EMBRYO DEFECTIVE 2766); structural constituent of nuclear pore (TAIR:AT2G45000.1); Has 6907 Blast hits to 2225 proteins in 238 species: Archae - 2; Bacteria - 178; Metazoa - 1711; Fungi - 786; Plants - 132; Viruses - 40; Other Eukaryotes - 4058 (source: NCBI BLink).  protein_id AT1G75340.1p  transcript_id AT1G75340.1  protein_id AT1G75340.1p  transcript_id AT1G75340.1  
At1g75350	chr1:028272163	0.0	W/28272163-28272231,28272322-28272687	AT1G75350.1  CDS  gene_syn F1B16.11, F1B16_11, emb2184, embryo defective 2184  gene emb2184  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product emb2184 (embryo defective 2184); structural constituent of ribosome  note embryo defective 2184 (emb2184); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: embryonic development ending in seed dormancy, translation, ribosome biogenesis; LOCATED IN: ribosome, chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L31 (InterPro:IPR002150); Has 673 Blast hits to 673 proteins in 229 species: Archae - 0; Bacteria - 418; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 218 (source: NCBI BLink).  protein_id AT1G75350.1p  transcript_id AT1G75350.1  protein_id AT1G75350.1p  transcript_id AT1G75350.1  
At1g75360	chr1:028275084	0.0	W/28275084-28275956	AT1G75360.1  CDS  gene_syn F1B16.16, F1B16_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 44 Blast hits to 41 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G75360.1p  transcript_id AT1G75360.1  protein_id AT1G75360.1p  transcript_id AT1G75360.1  
At1g75370	chr1:028279765	0.0	C/28279765-28279798,28279279-28279591,28279094-28279193,28278742-28279008,28278570-28278647,28278372-28278473,28278222-28278271,28278002-28278101,28277819-28277911,28277622-28277735,28277431-28277545,28276969-28277342,28276783-28276860,28276657-28276677	AT1G75370.1  CDS  gene_syn F1B16.10, F1B16_10  go_component plasma membrane|GO:0005886|17317660|IDA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||IEA  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putative  note SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putative; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative (TAIR:AT1G19650.1); Has 1740 Blast hits to 1736 proteins in 174 species: Archae - 0; Bacteria - 0; Metazoa - 625; Fungi - 355; Plants - 458; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink).  protein_id AT1G75370.1p  transcript_id AT1G75370.1  protein_id AT1G75370.1p  transcript_id AT1G75370.1  
At1g75370	chr1:028279765	0.0	C/28279765-28279798,28279279-28279591,28279094-28279193,28278742-28279008,28278570-28278647,28278372-28278473,28278222-28278271,28278002-28278101,28277819-28277911,28277622-28277735,28277431-28277545,28276969-28277342,28276783-28276860,28276669-28276712,28276440-28276584	AT1G75370.2  CDS  gene_syn F1B16.10, F1B16_10  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putative  note SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putative; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative (TAIR:AT1G19650.1).  protein_id AT1G75370.2p  transcript_id AT1G75370.2  protein_id AT1G75370.2p  transcript_id AT1G75370.2  
At1g75380	chr1:028283346	0.0	C/28283346-28283631,28283075-28283245,28282915-28282964,28282759-28282815,28282599-28282664,28282429-28282503,28282225-28282343,28282041-28282132,28281789-28281850	AT1G75380.1  CDS  gene_syn F1B16.9, F1B16_9  product wound-responsive protein-related  note wound-responsive protein-related; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF151 (InterPro:IPR003729); BEST Arabidopsis thaliana protein match is: wound-responsive family protein (TAIR:AT1G19660.2); Has 521 Blast hits to 521 proteins in 145 species: Archae - 30; Bacteria - 231; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 193 (source: NCBI BLink).  protein_id AT1G75380.1p  transcript_id AT1G75380.1  protein_id AT1G75380.1p  transcript_id AT1G75380.1  
At1g75380	chr1:028283346	0.0	C/28283346-28283631,28283075-28283245,28282915-28282964,28282759-28282815,28282599-28282664,28282429-28282503,28282225-28282343,28282041-28282132,28281789-28281850	AT1G75380.2  CDS  gene_syn F1B16.9, F1B16_9  product wound-responsive protein-related  note wound-responsive protein-related; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF151 (InterPro:IPR003729); BEST Arabidopsis thaliana protein match is: wound-responsive family protein (TAIR:AT1G19660.2); Has 521 Blast hits to 521 proteins in 145 species: Archae - 30; Bacteria - 231; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 193 (source: NCBI BLink).  protein_id AT1G75380.2p  transcript_id AT1G75380.2  protein_id AT1G75380.2p  transcript_id AT1G75380.2  
At1g75380	chr1:028283346	0.0	C/28283346-28283631,28283075-28283245,28282915-28282964,28282759-28282815,28282599-28282664,28282429-28282503,28282225-28282343,28282041-28282132,28281789-28281850	AT1G75380.3  CDS  gene_syn F1B16.9, F1B16_9  product wound-responsive protein-related  note wound-responsive protein-related; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF151 (InterPro:IPR003729); BEST Arabidopsis thaliana protein match is: wound-responsive family protein (TAIR:AT1G19660.2); Has 521 Blast hits to 521 proteins in 145 species: Archae - 30; Bacteria - 231; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 193 (source: NCBI BLink).  protein_id AT1G75380.3p  transcript_id AT1G75380.3  protein_id AT1G75380.3p  transcript_id AT1G75380.3  
At1g75388	chr1:028291955	0.0	W/28291955-28292080	AT1G75388.1  CDS  gene_syn CPuORF5, Conserved peptide upstream open reading frame 5  gene CPuORF5  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF5 represents a conserved upstream opening reading frame relative to major ORF AT1G75390.1  product CPuORF5 (Conserved peptide upstream open reading frame 5)  note Conserved peptide upstream open reading frame 5 (CPuORF5); BEST Arabidopsis thaliana protein match is: CPuORF1 (Conserved peptide upstream open reading frame 1) (TAIR:AT2G18162.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G75388.1p  transcript_id AT1G75388.1  protein_id AT1G75388.1p  transcript_id AT1G75388.1  
At1g75390	chr1:028292224	0.0	W/28292224-28292538,28292609-28292665	AT1G75390.2  CDS  gene_syn Arabidopsis thaliana basic leucine-zipper 44, AtbZIP44, F1B16.8, F1B16_8  gene AtbZIP44  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function protein heterodimerization activity|GO:0046982|16709202|IPI  product AtbZIP44 (Arabidopsis thaliana basic leucine-zipper 44); DNA binding / protein heterodimerization/ transcription factor  note Arabidopsis thaliana basic leucine-zipper 44 (AtbZIP44); FUNCTIONS IN: transcription factor activity, protein heterodimerization activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: GBF6 (G-BOX BINDING FACTOR 6); DNA binding / protein heterodimerization/ transcription factor (TAIR:AT4G34590.1); Has 941 Blast hits to 941 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 18; Plants - 916; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G75390.2p  transcript_id AT1G75390.2  protein_id AT1G75390.2p  transcript_id AT1G75390.2  
At1g75390	chr1:028292224	0.0	W/28292224-28292745	AT1G75390.1  CDS  gene_syn Arabidopsis thaliana basic leucine-zipper 44, AtbZIP44, F1B16.8, F1B16_8  gene AtbZIP44  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function protein heterodimerization activity|GO:0046982|16709202|IPI  product AtbZIP44 (Arabidopsis thaliana basic leucine-zipper 44); DNA binding / protein heterodimerization/ transcription factor  note Arabidopsis thaliana basic leucine-zipper 44 (AtbZIP44); FUNCTIONS IN: transcription factor activity, protein heterodimerization activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: GBF6 (G-BOX BINDING FACTOR 6); DNA binding / protein heterodimerization/ transcription factor (TAIR:AT4G34590.1); Has 1089 Blast hits to 1089 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 45; Plants - 1028; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G75390.1p  transcript_id AT1G75390.1  protein_id AT1G75390.1p  transcript_id AT1G75390.1  
At1g75394	chr1:028294786	0.0	W/28294786-28295097	AT1G75394.1  pseudogenic_transcript  pseudo  function Pseudogene of AT2G31305  
At1g75400	chr1:028297609	0.0	W/28297609-28297945,28298249-28298280,28298379-28299350,28299438-28299464	AT1G75400.1  CDS  gene_syn F1B16.7, F1B16_7  go_component chloroplast|GO:0009507||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G19680.1); Has 194 Blast hits to 131 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 15; Plants - 93; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT1G75400.1p  transcript_id AT1G75400.1  protein_id AT1G75400.1p  transcript_id AT1G75400.1  
At1g75410	chr1:028301153	0.0	C/28301153-28301890,28300698-28301074,28300560-28300620,28300095-28300493	AT1G75410.1  CDS  gene_syn BEL1-LIKE HOMEODOMAIN 3, BLH3, F1B16.6, F1B16_6  gene BLH3  function BEL1-like homeodomain 3 (BLH3)  go_component nucleus|GO:0005634|16513846|IDA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|16513846|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product BLH3 (BEL1-LIKE HOMEODOMAIN 3); DNA binding / transcription factor  note BEL1-LIKE HOMEODOMAIN 3 (BLH3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BEL10 (BEL1-LIKE HOMEODOMAIN 10); DNA binding / transcription factor (TAIR:AT1G19700.2); Has 4273 Blast hits to 4257 proteins in 271 species: Archae - 0; Bacteria - 20; Metazoa - 1735; Fungi - 191; Plants - 2032; Viruses - 0; Other Eukaryotes - 295 (source: NCBI BLink).  protein_id AT1G75410.1p  transcript_id AT1G75410.1  protein_id AT1G75410.1p  transcript_id AT1G75410.1  
At1g75410	chr1:028301153	0.0	C/28301153-28301890,28300698-28301074,28300560-28300620,28300095-28300493	AT1G75410.2  CDS  gene_syn BEL1-LIKE HOMEODOMAIN 3, BLH3, F1B16.6, F1B16_6  gene BLH3  function BEL1-like homeodomain 3 (BLH3)  go_component nucleus|GO:0005634|16513846|IDA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|16513846|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product BLH3 (BEL1-LIKE HOMEODOMAIN 3); DNA binding / transcription factor  note BEL1-LIKE HOMEODOMAIN 3 (BLH3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BEL10 (BEL1-LIKE HOMEODOMAIN 10); DNA binding / transcription factor (TAIR:AT1G19700.2); Has 4273 Blast hits to 4257 proteins in 271 species: Archae - 0; Bacteria - 20; Metazoa - 1735; Fungi - 191; Plants - 2032; Viruses - 0; Other Eukaryotes - 295 (source: NCBI BLink).  protein_id AT1G75410.2p  transcript_id AT1G75410.2  protein_id AT1G75410.2p  transcript_id AT1G75410.2  
At1g75420	chr1:028305469	0.0	W/28305469-28305706,28305794-28305936,28306039-28306310,28306457-28306611,28306734-28307317	AT1G75420.1  CDS  gene_syn F1B16.5, F1B16_5  go_process biosynthetic process|GO:0009058||IEA  go_component cellular_component|GO:0005575||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyl transferase family 1 protein  note glycosyl transferase family 1 protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: glycosyl transferase family 1 protein (TAIR:AT1G19710.1); Has 4771 Blast hits to 4769 proteins in 831 species: Archae - 149; Bacteria - 2715; Metazoa - 84; Fungi - 37; Plants - 75; Viruses - 0; Other Eukaryotes - 1711 (source: NCBI BLink).  protein_id AT1G75420.1p  transcript_id AT1G75420.1  protein_id AT1G75420.1p  transcript_id AT1G75420.1  
At1g75430	chr1:028309224	0.0	C/28309224-28309517,28308503-28308891,28308344-28308404,28308121-28308249	AT1G75430.1  CDS  gene_syn BEL1-LIKE HOMEODOMAIN 11, BLH11, F1B16.4, F1B16_4  gene BLH11  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product BLH11 (BEL1-LIKE HOMEODOMAIN 11); transcription factor  note BEL1-LIKE HOMEODOMAIN 11 (BLH11); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: pedicel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BLH7 (bell1-like homeodomain 7); DNA binding / transcription factor (TAIR:AT2G16400.1); Has 4164 Blast hits to 4163 proteins in 264 species: Archae - 0; Bacteria - 0; Metazoa - 1847; Fungi - 183; Plants - 2027; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT1G75430.1p  transcript_id AT1G75430.1  protein_id AT1G75430.1p  transcript_id AT1G75430.1  
At1g75440	chr1:028313623	0.0	W/28313623-28313652,28313742-28313845,28313933-28314035,28314271-28314334,28314680-28314768,28314865-28314960	AT1G75440.1  CDS  gene_syn F1B16.3, F1B16_3, UBC16, ubiquitin-conjugating enzyme 16  gene UBC16  go_function small conjugating protein ligase activity|GO:0019787||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC16 (ubiquitin-conjugating enzyme 16); small conjugating protein ligase/ ubiquitin-protein ligase  note ubiquitin-conjugating enzyme 16 (UBC16); FUNCTIONS IN: ubiquitin-protein ligase activity, small conjugating protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC18 (ubiquitin-conjugating enzyme 18); small conjugating protein ligase/ ubiquitin-protein ligase (TAIR:AT5G42990.1); Has 6497 Blast hits to 6496 proteins in 295 species: Archae - 0; Bacteria - 2; Metazoa - 3150; Fungi - 1284; Plants - 976; Viruses - 16; Other Eukaryotes - 1069 (source: NCBI BLink).  protein_id AT1G75440.1p  transcript_id AT1G75440.1  protein_id AT1G75440.1p  transcript_id AT1G75440.1  
At1g75450	chr1:028317461	0.0	C/28317461-28318064,28317246-28317373,28316842-28317108,28316053-28316315,28315248-28315608	AT1G75450.1  CDS  gene_syn ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, ATCKX5, ATCKX6, CKX5, CYTOKININ OXIDASE 5, CYTOKININ OXIDASE 6, F1B16.2, F1B16_2  gene CKX5  function This gene used to be called AtCKX6. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.  go_component extracellular region|GO:0005576|12721786|TAS  go_process cytokinin catabolic process|GO:0009823|12721786|TAS  go_process cytokinin catabolic process|GO:0009823||ISS  go_function cytokinin dehydrogenase activity|GO:0019139|14555694|TAS  go_function cytokinin dehydrogenase activity|GO:0019139||ISS  product CKX5 (CYTOKININ OXIDASE 5); cytokinin dehydrogenase  note CYTOKININ OXIDASE 5 (CKX5); FUNCTIONS IN: cytokinin dehydrogenase activity; INVOLVED IN: cytokinin catabolic process; LOCATED IN: extracellular region; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytokinin dehydrogenase 1, FAD and cytokinin binding (InterPro:IPR015345), FAD-binding, type 2 (InterPro:IPR016166), Oxygen oxidoreductase covalent FAD-binding site (InterPro:IPR006093), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: CKX1 (CYTOKININ OXIDASE/DEHYDROGENASE 1); cytokinin dehydrogenase (TAIR:AT2G41510.1); Has 3762 Blast hits to 3759 proteins in 705 species: Archae - 89; Bacteria - 2158; Metazoa - 120; Fungi - 773; Plants - 200; Viruses - 0; Other Eukaryotes - 422 (source: NCBI BLink).  protein_id AT1G75450.1p  transcript_id AT1G75450.1  protein_id AT1G75450.1p  transcript_id AT1G75450.1  
At1g75460	chr1:028327986	0.0	W/28327986-28328822	AT1G75460.1  CDS  gene_syn F1B16.1, F1B16_1  go_component chloroplast|GO:0009507|18431481|IDA  go_process ATP-dependent proteolysis|GO:0006510||IEA  go_function ATP-dependent peptidase activity|GO:0004176||IEA  go_function ATP-dependent peptidase activity|GO:0004176||ISS  product ATP-dependent protease La (LON) domain-containing protein  note ATP-dependent protease La (LON) domain-containing protein; FUNCTIONS IN: ATP-dependent peptidase activity; INVOLVED IN: ATP-dependent proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, lon N-terminal (InterPro:IPR003111); BEST Arabidopsis thaliana protein match is: ATP-dependent protease La (LON) domain-containing protein (TAIR:AT1G19740.1); Has 2926 Blast hits to 2926 proteins in 561 species: Archae - 0; Bacteria - 1066; Metazoa - 150; Fungi - 29; Plants - 57; Viruses - 0; Other Eukaryotes - 1624 (source: NCBI BLink).  protein_id AT1G75460.1p  transcript_id AT1G75460.1  protein_id AT1G75460.1p  transcript_id AT1G75460.1  
At1g75470	chr1:028330072	0.0	W/28330072-28330093,28330177-28331300	AT1G75470.1  CDS  gene_syn ARABIDOPSIS THALIANA PURINE PERMEASE 15, ATPUP15, F1B16.15  gene ATPUP15  function Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.  go_component membrane|GO:0016020|10662864|TAS  go_process purine transport|GO:0006863|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345||ISS  product ATPUP15; purine transmembrane transporter  note ATPUP15; FUNCTIONS IN: purine transmembrane transporter activity; INVOLVED IN: purine transport; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: ATPUP14; purine transmembrane transporter (TAIR:AT1G19770.1); Has 174 Blast hits to 168 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 169; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G75470.1p  transcript_id AT1G75470.1  protein_id AT1G75470.1p  transcript_id AT1G75470.1  
At1g75480	chr1:028334088	0.0	C/28334088-28334744	AT1G75480.1  pseudogenic_transcript  pseudo  gene_syn F1B16.20  note pseudogene, hypothetical protein, similar to GB:AAC33745 from (Arabidopsis thaliana)  
At1g75490	chr1:028336045	0.0	W/28336045-28336665	AT1G75490.1  CDS  gene_syn F1B16.21  function encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to chitin|GO:0010200|17722694|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product DNA binding / transcription factor  note DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to chitin, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT5G18450.1); Has 3740 Blast hits to 3654 proteins in 200 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 3722; Viruses - 3; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G75490.1p  transcript_id AT1G75490.1  protein_id AT1G75490.1p  transcript_id AT1G75490.1  
At1g75500	chr1:028339877	0.0	C/28339877-28340091,28339717-28339779,28339523-28339639,28338843-28339263,28338597-28338748,28338282-28338483	AT1G75500.1  CDS  gene_syn F1B16.19  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020||ISS  product nodulin MtN21 family protein  note nodulin MtN21 family protein; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT3G53210.1); Has 2455 Blast hits to 2437 proteins in 313 species: Archae - 17; Bacteria - 780; Metazoa - 6; Fungi - 0; Plants - 646; Viruses - 0; Other Eukaryotes - 1006 (source: NCBI BLink).  protein_id AT1G75500.1p  transcript_id AT1G75500.1  protein_id AT1G75500.1p  transcript_id AT1G75500.1  
At1g75510	chr1:028348432	0.0	C/28348432-28348629,28348096-28348204,28347878-28348008,28347703-28347777,28347254-28347526	AT1G75510.1  CDS  gene_syn F1B16.18  go_process transcription from RNA polymerase II promoter|GO:0006366||IEA  go_process transcription initiation from RNA polymerase II promoter|GO:0006367||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  go_function catalytic activity|GO:0003824||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function general RNA polymerase II transcription factor activity|GO:0016251||IEA  go_component transcription factor TFIIF complex|GO:0005674||ISS  go_component mitochondrion|GO:0005739|14671022|IDA  go_process transcription initiation from RNA polymerase II promoter|GO:0006367||ISS  go_function RNA polymerase II transcription factor activity|GO:0003702||ISS  product transcription initiation factor IIF beta subunit (TFIIF-beta) family protein  note transcription initiation factor IIF beta subunit (TFIIF-beta) family protein; FUNCTIONS IN: RNA polymerase II transcription factor activity, general RNA polymerase II transcription factor activity, catalytic activity, ATP binding, ATP-dependent helicase activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter, transcription from RNA polymerase II promoter; LOCATED IN: transcription factor TFIIF complex, mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Transcription Factor IIF, Rap30/Rap74, interaction (InterPro:IPR011039), Transcription initiation factor IIF, beta subunit (InterPro:IPR003196), Transcription initiation factor IIF, beta subunit, subgroup (InterPro:IPR016640); BEST Arabidopsis thaliana protein match is: ATP binding / RNA polymerase II transcription factor (TAIR:AT3G52270.1); Has 230 Blast hits to 230 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 84; Plants - 32; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G75510.1p  transcript_id AT1G75510.1  protein_id AT1G75510.1p  transcript_id AT1G75510.1  
At1g75520	chr1:028352501	0.0	C/28352501-28353179,28351779-28352140	AT1G75520.1  CDS  gene_syn F1B16.17, SHI-RELATED SEQUENCE 5, SRS5  gene SRS5  function A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.  go_component cellular_component|GO:0005575||ND  go_process gynoecium development|GO:0048467|16740146|IGI  go_function molecular_function|GO:0003674||ND  product SRS5 (SHI-RELATED SEQUENCE 5)  note SHI-RELATED SEQUENCE 5 (SRS5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: gynoecium development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SRS7 (SHI-RELATED SEQUENCE 7) (TAIR:AT1G19790.2); Has 206 Blast hits to 206 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).  protein_id AT1G75520.1p  transcript_id AT1G75520.1  protein_id AT1G75520.1p  transcript_id AT1G75520.1  
At1g75530	chr1:028359309	0.0	W/28359309-28359362,28359754-28360878,28360966-28361017,28361109-28361254,28361333-28361419,28361522-28361650,28361741-28361815	AT1G75530.1  CDS  gene_syn F10A5.25, F10A5_25  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product forkhead-associated domain-containing protein / FHA domain-containing protein  note forkhead-associated domain-containing protein / FHA domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: emb1967 (embryo defective 1967) (TAIR:AT3G54350.3); Has 300 Blast hits to 200 proteins in 63 species: Archae - 0; Bacteria - 2; Metazoa - 212; Fungi - 11; Plants - 43; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT1G75530.1p  transcript_id AT1G75530.1  protein_id AT1G75530.1p  transcript_id AT1G75530.1  
At1g75540	chr1:028366059	0.0	W/28366059-28366250,28366346-28366771,28367021-28367398	AT1G75540.1  CDS  gene_syn F10A5.24, F10A5_24, SALT TOLERANCE HOMOLOG2, STH2  gene STH2  go_component intracellular|GO:0005622||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product STH2 (SALT TOLERANCE HOMOLOG2); transcription factor/ zinc ion binding  note SALT TOLERANCE HOMOLOG2 (STH2); FUNCTIONS IN: transcription factor activity, zinc ion binding; LOCATED IN: intracellular; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: zinc finger (B-box type) family protein (TAIR:AT4G39070.1); Has 2516 Blast hits to 1815 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 35; Plants - 1394; Viruses - 0; Other Eukaryotes - 1052 (source: NCBI BLink).  protein_id AT1G75540.1p  transcript_id AT1G75540.1  protein_id AT1G75540.1p  transcript_id AT1G75540.1  
At1g75550	chr1:028369437	0.0	C/28369437-28369940	AT1G75550.1  CDS  gene_syn F10A5.23, F10A5_23  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 97626 Blast hits to 22171 proteins in 1360 species: Archae - 162; Bacteria - 33880; Metazoa - 32859; Fungi - 5062; Plants - 11757; Viruses - 1226; Other Eukaryotes - 12680 (source: NCBI BLink).  protein_id AT1G75550.1p  transcript_id AT1G75550.1  protein_id AT1G75550.1p  transcript_id AT1G75550.1  
At1g75560	chr1:028372563	0.0	C/28372563-28372717,28372028-28372120,28371420-28371945	AT1G75560.1  CDS  gene_syn F10A5.22, F10A5_22  go_component chloroplast|GO:0009507||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc knuckle (CCHC-type) family protein  note zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, CCHC retroviral-type (InterPro:IPR013084); BEST Arabidopsis thaliana protein match is: CSDP1 (cold shock domain protein 1); RNA binding / double-stranded DNA binding / nucleic acid binding / single-stranded DNA binding (TAIR:AT4G36020.1); Has 10551 Blast hits to 6586 proteins in 284 species: Archae - 0; Bacteria - 4; Metazoa - 1615; Fungi - 963; Plants - 500; Viruses - 6839; Other Eukaryotes - 630 (source: NCBI BLink).  protein_id AT1G75560.1p  transcript_id AT1G75560.1  protein_id AT1G75560.1p  transcript_id AT1G75560.1  
At1g75560	chr1:028372563	0.0	C/28372563-28372717,28372028-28372120,28371420-28371945	AT1G75560.2  CDS  gene_syn F10A5.22, F10A5_22  go_component chloroplast|GO:0009507||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc knuckle (CCHC-type) family protein  note zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, CCHC retroviral-type (InterPro:IPR013084); BEST Arabidopsis thaliana protein match is: CSDP1 (cold shock domain protein 1); RNA binding / double-stranded DNA binding / nucleic acid binding / single-stranded DNA binding (TAIR:AT4G36020.1); Has 10551 Blast hits to 6586 proteins in 284 species: Archae - 0; Bacteria - 4; Metazoa - 1615; Fungi - 963; Plants - 500; Viruses - 6839; Other Eukaryotes - 630 (source: NCBI BLink).  protein_id AT1G75560.2p  transcript_id AT1G75560.2  protein_id AT1G75560.2p  transcript_id AT1G75560.2  
At1g75570	chr1:028373489	0.0	C/28373489-28373561	AT1G75570.1  tRNA  gene_syn 51284.TRNA-GLU-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Glu (anticodon: CTC)  transcript_id AT1G75570.1  
At1g75580	chr1:028377530	0.0	W/28377530-28377856	AT1G75580.1  CDS  gene_syn F10A5.21, F10A5_21  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  go_function calmodulin binding|GO:0005516||ISS  product auxin-responsive protein, putative  note auxin-responsive protein, putative; FUNCTIONS IN: calmodulin binding; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT4G34760.1); Has 721 Blast hits to 709 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 720; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G75580.1p  transcript_id AT1G75580.1  protein_id AT1G75580.1p  transcript_id AT1G75580.1  
At1g75590	chr1:028383250	0.0	C/28383250-28383714	AT1G75590.1  CDS  gene_syn F10A5.20, F10A5_20  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT1G19840.1); Has 730 Blast hits to 719 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 729; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G75590.1p  transcript_id AT1G75590.1  protein_id AT1G75590.1p  transcript_id AT1G75590.1  
At1g75600	chr1:028390753	0.0	W/28390753-28390824,28390915-28390991,28391096-28391186,28391291-28391461	AT1G75600.1  CDS  gene_syn F10A5.32, F10A5_32  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product histone H3.2, putative  note histone H3.2, putative; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: flower, root, pollen tube, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H3 (TAIR:AT5G10980.1); Has 10214 Blast hits to 10211 proteins in 5279 species: Archae - 0; Bacteria - 0; Metazoa - 7339; Fungi - 1303; Plants - 998; Viruses - 0; Other Eukaryotes - 574 (source: NCBI BLink).  protein_id AT1G75600.1p  transcript_id AT1G75600.1  protein_id AT1G75600.1p  transcript_id AT1G75600.1  
At1g75610	chr1:028392729	0.0	W/28392729-28393312	AT1G75610.1  pseudogenic_transcript  pseudo  gene_syn F10A5.19, F10A5_19  note pseudogene, histone H3, identical to histone H3.2 from Medicago sativa GB:AAB36495 GI:488571, Histone H3.2, minor Lolium temulentum SP|P11105, histone H3 Tortula ruralis GI:4574208; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4; blastp match of 96% identity and 6.6e-54 P-value to GP|6006364|dbj|BAA84794.1||AP000559 EST D15300(C0425) corresponds to a region of the predicted gene.~Similar to histone H3 (AB015760) {Oryza sativa (japonica cultivar-group)}  
At1g75620	chr1:028394951	0.0	C/28394951-28396594	AT1G75620.1  CDS  gene_syn F10A5.18, F10A5_18  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glyoxal oxidase-related  note glyoxal oxidase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Galactose oxidase, beta-propeller (InterPro:IPR015916), Immunoglobulin E-set (InterPro:IPR014756), Glyoxal oxidase, N-terminal (InterPro:IPR009880), Region of unknown function DUF1929 (InterPro:IPR015202); BEST Arabidopsis thaliana protein match is: glyoxal oxidase-related (TAIR:AT1G19900.1); Has 563 Blast hits to 561 proteins in 114 species: Archae - 0; Bacteria - 228; Metazoa - 0; Fungi - 169; Plants - 152; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G75620.1p  transcript_id AT1G75620.1  protein_id AT1G75620.1p  transcript_id AT1G75620.1  
At1g75630	chr1:028400662	0.0	W/28400662-28400743,28400834-28401119,28401900-28402032	AT1G75630.1  CDS  gene_syn AVA-P4, F10A5.17, F10A5_17, VACUOLAR H+-PUMPING ATPASE 16 KD PROTEOLIPID, VACUOLAR H+-PUMPING ATPASE 16 KDA PROTEOLIPID SUBUNIT 4  gene AVA-P4  function vacuolar H+-pumping ATPase 16 kD proteolipid (ava-p) mRNA,  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_function ATPase activity|GO:0016887||ISS  product AVA-P4; ATPase  note AVA-P4; FUNCTIONS IN: ATPase activity; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: ATPase, F0/V0 complex, subunit C (InterPro:IPR002379), ATPase, V0 complex, proteolipid subunit C, eukaryotic (InterPro:IPR011555), ATPase, V0 complex, proteolipid subunit C (InterPro:IPR000245); BEST Arabidopsis thaliana protein match is: AVA-P2; ATPase/ proton-transporting ATPase, rotational mechanism (TAIR:AT1G19910.1); Has 1811 Blast hits to 1633 proteins in 398 species: Archae - 127; Bacteria - 309; Metazoa - 519; Fungi - 312; Plants - 224; Viruses - 0; Other Eukaryotes - 320 (source: NCBI BLink).  protein_id AT1G75630.1p  transcript_id AT1G75630.1  protein_id AT1G75630.1p  transcript_id AT1G75630.1  
At1g75640	chr1:028403600	0.0	C/28403600-28407022	AT1G75640.1  CDS  gene_syn F10A5.16, F10A5_16  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat family protein / protein kinase family protein  note leucine-rich repeat family protein / protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT4G36180.1); Has 173234 Blast hits to 100032 proteins in 2953 species: Archae - 102; Bacteria - 13748; Metazoa - 68743; Fungi - 7406; Plants - 61284; Viruses - 375; Other Eukaryotes - 21576 (source: NCBI BLink).  protein_id AT1G75640.1p  transcript_id AT1G75640.1  protein_id AT1G75640.1p  transcript_id AT1G75640.1  
At1g75650	chr1:028407984	0.0	W/28407984-28408056	AT1G75650.1  tRNA  gene_syn 51284.TRNA-GLU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Glu (anticodon: CTC)  transcript_id AT1G75650.1  
At1g75660	chr1:028408289	0.0	W/28408289-28408492,28408688-28408790,28408872-28408948,28409166-28409357,28409461-28409580,28409718-28409780,28409968-28410117,28410227-28410391,28410618-28410695,28410783-28410869,28411320-28411574,28411693-28411788,28411892-28411987,28412072-28412142,28412531-28412659,28412748-28412824,28412921-28412961,28413050-28413124,28413231-28413388,28413525-28413629,28413717-28413792,28413948-28414069,28414303-28414825	AT1G75660.1  CDS  gene_syn 5 -3  EXORIBONUCLEASE 3, F10A5.15, F10A5_15, XRN3  gene XRN3  function Encodes a protein with similarity to yeast 5 -3 exonucleases and can functionally complement the yeast mutations. In Arabidopsis XRN3 acts as a suppressor of posttranscriptional gene silencing. Mutants accumulate excised miRNA products suggesting that XRN3 is involved in degradation of these products.  go_component nucleus|GO:0005634|11106401|IDA  go_process miRNA catabolic process|GO:0010587|17993620|IMP  go_function 5 -3  exoribonuclease activity|GO:0004534|11106401|IGI  go_function 5 -3  exoribonuclease activity|GO:0004534||ISS  product XRN3; 5 -3  exoribonuclease  note XRN3; FUNCTIONS IN: 5 -3  exoribonuclease activity; INVOLVED IN: miRNA catabolic process; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 5 -3  exoribonuclease 2 (InterPro:IPR017151), Zinc finger, CCHC-type (InterPro:IPR001878), Putative 5-3 exonuclease (InterPro:IPR004859); BEST Arabidopsis thaliana protein match is: XRN2 (EXORIBONUCLEASE 2); 5 -3  exonuclease/ 5 -3  exoribonuclease/ nucleic acid binding (TAIR:AT5G42540.1); Has 3626 Blast hits to 2944 proteins in 319 species: Archae - 2; Bacteria - 219; Metazoa - 1193; Fungi - 564; Plants - 628; Viruses - 23; Other Eukaryotes - 997 (source: NCBI BLink).  protein_id AT1G75660.1p  transcript_id AT1G75660.1  protein_id AT1G75660.1p  transcript_id AT1G75660.1  
At1g75670	chr1:028416396	0.0	C/28416396-28416505,28416070-28416221,28415848-28415957,28415674-28415759,28415486-28415590,28415378-28415405	AT1G75670.1  CDS  gene_syn F10A5.14, F10A5_14  go_process transcription|GO:0006350||IEA  go_function RNA binding|GO:0003723||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_component cellular_component|GO:0005575||ND  product DNA-directed RNA polymerase/ RNA binding  note DNA-directed RNA polymerase/ RNA binding; FUNCTIONS IN: DNA-directed RNA polymerase activity, RNA binding; INVOLVED IN: transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: S1, RNA binding (InterPro:IPR003029), RNA polymerase Rpb7, N-terminal (InterPro:IPR005576); Has 39 Blast hits to 39 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 25; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G75670.1p  transcript_id AT1G75670.1  protein_id AT1G75670.1p  transcript_id AT1G75670.1  
At1g75670	chr1:028416396	0.0	C/28416396-28416505,28416070-28416221,28415848-28415957,28415674-28415759,28415486-28415590,28415378-28415405	AT1G75670.2  CDS  gene_syn F10A5.14, F10A5_14  go_process transcription|GO:0006350||IEA  go_function RNA binding|GO:0003723||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_component cellular_component|GO:0005575||ND  product DNA-directed RNA polymerase/ RNA binding  note DNA-directed RNA polymerase/ RNA binding; FUNCTIONS IN: DNA-directed RNA polymerase activity, RNA binding; INVOLVED IN: transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: S1, RNA binding (InterPro:IPR003029), RNA polymerase Rpb7, N-terminal (InterPro:IPR005576); Has 39 Blast hits to 39 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 25; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G75670.2p  transcript_id AT1G75670.2  protein_id AT1G75670.2p  transcript_id AT1G75670.2  
At1g75680	chr1:028419012	0.0	C/28419012-28419231,28418600-28418883,28418099-28418533,28417874-28418012,28417626-28417792,28417215-28417547	AT1G75680.1  CDS  gene_syn Arabidopsis thaliana glycosyl hydrolase 9B7, AtGH9B7, F10A5.13, F10A5_13  gene AtGH9B7  go_component plasma membrane|GO:0005886|17317660|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product AtGH9B7 (Arabidopsis thaliana glycosyl hydrolase 9B7); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds  note Arabidopsis thaliana glycosyl hydrolase 9B7 (AtGH9B7); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: AtGH9B5 (Arabidopsis thaliana Glycosyl Hydrolase 9B5); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G19940.1); Has 1169 Blast hits to 1163 proteins in 198 species: Archae - 0; Bacteria - 372; Metazoa - 138; Fungi - 14; Plants - 617; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT1G75680.1p  transcript_id AT1G75680.1  protein_id AT1G75680.1p  transcript_id AT1G75680.1  
At1g75690	chr1:028423021	0.0	C/28423021-28423170,28422854-28422937,28422689-28422740,28422397-28422553,28422273-28422294	AT1G75690.1  CDS  gene_syn F10A5.12, F10A5_12  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  product chaperone protein dnaJ-related  note chaperone protein dnaJ-related; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, cysteine-rich region (InterPro:IPR001305); Has 326 Blast hits to 308 proteins in 90 species: Archae - 4; Bacteria - 115; Metazoa - 13; Fungi - 12; Plants - 104; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT1G75690.1p  transcript_id AT1G75690.1  protein_id AT1G75690.1p  transcript_id AT1G75690.1  
At1g75700	chr1:028423956	0.0	W/28423956-28423987,28424075-28424173,28424261-28424317,28424401-28424464,28424544-28424750,28424857-28424931	AT1G75700.1  CDS  gene_syn F10A5.11, F10A5_11, HVA22-LIKE PROTEIN G, HVA22G  gene HVA22G  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product HVA22G (HVA22-LIKE PROTEIN G)  note HVA22-LIKE PROTEIN G (HVA22G); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TB2/DP1 and HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: HVA22H (HVA22-LIKE PROTEIN H (ATHVA22H)) (TAIR:AT1G19950.1); Has 1051 Blast hits to 1050 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 550; Fungi - 138; Plants - 305; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT1G75700.1p  transcript_id AT1G75700.1  protein_id AT1G75700.1p  transcript_id AT1G75700.1  
At1g75710	chr1:028428806	0.0	W/28428806-28429392,28429481-28429578,28430425-28431128	AT1G75710.1  CDS  gene_syn F10A5.10, F10A5_10  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT4G27240.1); Has 475 Blast hits to 218 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 74; Fungi - 30; Plants - 106; Viruses - 0; Other Eukaryotes - 265 (source: NCBI BLink).  protein_id AT1G75710.1p  transcript_id AT1G75710.1  protein_id AT1G75710.1p  transcript_id AT1G75710.1  
At1g75717	chr1:028433977	0.0	W/28433977-28434261	AT1G75717.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G75717.1p  transcript_id AT1G75717.1  protein_id AT1G75717.1p  transcript_id AT1G75717.1  
At1g75720	chr1:028435192	0.0	C/28435192-28435318,28434648-28435114	AT1G75720.1  CDS  gene_syn F10A5.8, F10A5_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51220.1); Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G75720.1p  transcript_id AT1G75720.1  protein_id AT1G75720.1p  transcript_id AT1G75720.1  
At1g75730	chr1:028438914	0.0	C/28438914-28438983,28438640-28438791,28438450-28438507,28437952-28438064,28437562-28437851,28437415-28437475,28437290-28437326,28437158-28437221,28436672-28437071,28436463-28436594,28435991-28436383	AT1G75730.1  CDS  gene_syn F10A5.7, F10A5_7  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; Has 251 Blast hits to 223 proteins in 67 species: Archae - 0; Bacteria - 74; Metazoa - 64; Fungi - 10; Plants - 5; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT1G75730.1p  transcript_id AT1G75730.1  protein_id AT1G75730.1p  transcript_id AT1G75730.1  
At1g75740	chr1:028440889	0.0	W/28440889-28440960	AT1G75740.1  tRNA  gene_syn 51284.TRNA-THR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Thr (anticodon: CGT)  transcript_id AT1G75740.1  
At1g75750	chr1:028442210	0.0	C/28442210-28442284,28442077-28442116,28441813-28441994	AT1G75750.1  CDS  gene_syn F10A5.6, F10A5_6, GASA1, GAST1 PROTEIN HOMOLOG 1  gene GASA1  function GA-responsive GAST1 protein homolog regulated by BR and GA antagonistically. Possibly involved in cell elongation based on expression data  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process response to abscisic acid stimulus|GO:0009737|10849358|IDA  go_process response to gibberellin stimulus|GO:0009739|10849358|IDA  go_process response to gibberellin stimulus|GO:0009739|7727751|IMP  go_process response to brassinosteroid stimulus|GO:0009741||IMP  go_process unidimensional cell growth|GO:0009826||TAS  go_function molecular_function|GO:0003674||ND  product GASA1 (GAST1 PROTEIN HOMOLOG 1)  note GAST1 PROTEIN HOMOLOG 1 (GASA1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to gibberellin stimulus, response to brassinosteroid stimulus, response to abscisic acid stimulus, unidimensional cell growth; LOCATED IN: plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G18420.1); Has 250 Blast hits to 250 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 250; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G75750.1p  transcript_id AT1G75750.1  protein_id AT1G75750.1p  transcript_id AT1G75750.1  
At1g75760	chr1:028448199	0.0	C/28448199-28448421,28447831-28448030,28447467-28447607,28447313-28447393,28447117-28447241,28446940-28446988	AT1G75760.1  CDS  gene_syn F10A5.5, F10A5_5  go_component integral to membrane|GO:0016021||IEA  go_process protein retention in ER lumen|GO:0006621||IEA  go_function ER retention sequence binding|GO:0046923||IEA  go_component integral to membrane|GO:0016021||ISS  go_process protein transport|GO:0015031||ISS  go_function receptor activity|GO:0004872||ISS  product ER lumen protein retaining receptor family protein  note ER lumen protein retaining receptor family protein; FUNCTIONS IN: ER retention sequence binding, receptor activity; INVOLVED IN: protein retention in ER lumen, protein transport; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ER lumen protein retaining receptor (InterPro:IPR000133); BEST Arabidopsis thaliana protein match is: ER lumen protein retaining receptor family protein (TAIR:AT1G19970.1); Has 627 Blast hits to 627 proteins in 165 species: Archae - 0; Bacteria - 0; Metazoa - 264; Fungi - 115; Plants - 120; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).  protein_id AT1G75760.1p  transcript_id AT1G75760.1  protein_id AT1G75760.1p  transcript_id AT1G75760.1  
At1g75770	chr1:028450022	0.0	W/28450022-28450348,28450501-28450560,28450666-28450971	AT1G75770.1  CDS  gene_syn F10A5.4, F10A5_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; Has 4 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G75770.1p  transcript_id AT1G75770.1  protein_id AT1G75770.1p  transcript_id AT1G75770.1  
At1g75780	chr1:028453206	0.0	C/28453206-28453602,28452143-28452412,28451378-28452054	AT1G75780.1  CDS  gene_syn F10A5.3, F10A5_3, TUB1, TUBULIN BETA-1 CHAIN  gene TUB1  function beta tubulin gene downregulated by phytochrome A (phyA)-mediated far-red light high-irradiance and the phytochrome B (phyB)-mediated red light high-irradiance responses  go_component vacuole|GO:0005773|14760709|IDA  go_function GTPase activity|GO:0003924||IEA  go_function structural molecule activity|GO:0005198||IEA  go_function GTP binding|GO:0005525||IEA  go_process response to light stimulus|GO:0009416|8718628|IEP  go_process unidimensional cell growth|GO:0009826|8718628|IEP  go_function structural molecule activity|GO:0005198||ISS  product TUB1; GTP binding / GTPase/ structural molecule  note TUB1; FUNCTIONS IN: structural molecule activity, GTP binding, GTPase activity; INVOLVED IN: response to light stimulus, unidimensional cell growth; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase (InterPro:IPR003008), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: TUB5; structural constituent of cytoskeleton (TAIR:AT1G20010.1); Has 17206 Blast hits to 17152 proteins in 3649 species: Archae - 33; Bacteria - 33; Metazoa - 3623; Fungi - 9655; Plants - 1011; Viruses - 0; Other Eukaryotes - 2851 (source: NCBI BLink).  protein_id AT1G75780.1p  transcript_id AT1G75780.1  protein_id AT1G75780.1p  transcript_id AT1G75780.1  
At1g75790	chr1:028457251	0.0	C/28457251-28457388,28457016-28457125,28456672-28456942,28456357-28456459,28455899-28456259,28455430-28455795,28455269-28455347,28454980-28455189	AT1G75790.1  CDS  gene_syn F10A5.2, F10A5_2, SKU5 Similar 18, sks18  gene sks18  go_component endomembrane system|GO:0012505||IEA  go_function copper ion binding|GO:0005507||ISS  go_function pectinesterase activity|GO:0030599||ISS  product sks18 (SKU5 Similar 18); copper ion binding / pectinesterase  note SKU5 Similar 18 (sks18); FUNCTIONS IN: pectinesterase activity, copper ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: sks4 (SKU5 Similar 4); copper ion binding / oxidoreductase (TAIR:AT4G22010.1); Has 3825 Blast hits to 3794 proteins in 666 species: Archae - 4; Bacteria - 1140; Metazoa - 257; Fungi - 1461; Plants - 789; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink).  protein_id AT1G75790.1p  transcript_id AT1G75790.1  protein_id AT1G75790.1p  transcript_id AT1G75790.1  
At1g75800	chr1:028458889	0.0	W/28458889-28458943,28459025-28459727,28460213-28460447	AT1G75800.1  CDS  gene_syn T4O12.3, T4O12_3  go_component endomembrane system|GO:0012505||IEA  go_process response to other organism|GO:0051707||ISS  go_function molecular_function|GO:0003674||ND  product pathogenesis-related thaumatin family protein  note pathogenesis-related thaumatin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: pathogenesis-related thaumatin family protein (TAIR:AT1G20030.2); Has 1077 Blast hits to 1068 proteins in 152 species: Archae - 2; Bacteria - 22; Metazoa - 59; Fungi - 47; Plants - 930; Viruses - 4; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G75800.1p  transcript_id AT1G75800.1  protein_id AT1G75800.1p  transcript_id AT1G75800.1  
At1g75810	chr1:028461747	0.0	W/28461747-28462124	AT1G75810.1  CDS  gene_syn T4O12.4, T4O12_4  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G75810.1p  transcript_id AT1G75810.1  protein_id AT1G75810.1p  transcript_id AT1G75810.1  
At1g75820	chr1:028464063	0.0	C/28464063-28466652,28463631-28463983	AT1G75820.1  CDS  gene_syn CLAVATA 1, CLV1, CLV1 RECEPTOR KINASE PRECURSOR, FAS3, FASCIATA 3, FLO5, FLOWER DEVELOPMENT 5, T4O12.5, T4O12_5  gene CLV1  function Putative receptor kinase with an extracellular leucine-rich domain. Controls shoot and floral meristem size, and contributes to establish and maintain floral meristem identity. Negatively regulated by KAPP (kinase-associated protein phosphatase). CLV3 peptide binds directly CLV1 ectodomain.  go_component membrane|GO:0016020|9160749|ISS  go_component integral to membrane|GO:0016021|10072399|TAS  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_process signal complex assembly|GO:0007172|10072399|IDA  go_process regulation of meristem organization|GO:0009934|9160749|IMP  go_process cell differentiation|GO:0030154|10080719|IMP  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function receptor signaling protein serine/threonine kinase activity|GO:0004702|9160749|ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product CLV1 (CLAVATA 1); ATP binding / kinase/ protein serine/threonine kinase/ receptor signaling protein serine/threonine kinase  note CLAVATA 1 (CLV1); FUNCTIONS IN: protein serine/threonine kinase activity, receptor signaling protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: regulation of meristem organization, cell differentiation, transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation, signal complex assembly; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: BAM1 (BARELY ANY MERISTEM 1); ATP binding / kinase/ protein serine/threonine kinase (TAIR:AT5G65700.1); Has 143298 Blast hits to 96500 proteins in 3325 species: Archae - 78; Bacteria - 11525; Metazoa - 54382; Fungi - 6866; Plants - 51070; Viruses - 376; Other Eukaryotes - 19001 (source: NCBI BLink).  protein_id AT1G75820.1p  transcript_id AT1G75820.1  protein_id AT1G75820.1p  transcript_id AT1G75820.1  
At1g75830	chr1:028472405	0.0	W/28472405-28472468,28472576-28472754	AT1G75830.1  CDS  gene_syn LCR67, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 67, PDF1.1, PLANT DEFENSIN 1.2, T4O12.7, T4O12_7  gene LCR67  function Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.  go_component endomembrane system|GO:0012505||IEA  go_component cell wall|GO:0005618||ISS  go_process defense response|GO:0006952|18674922|ISS  go_process defense response|GO:0006952||ISS  go_function molecular_function|GO:0003674||ND  product LCR67  note LCR67; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: endomembrane system, cell wall; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: PDF1.3 (plant defensin 1.3) (TAIR:AT2G26010.1); Has 120 Blast hits to 120 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 119; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G75830.1p  transcript_id AT1G75830.1  protein_id AT1G75830.1p  transcript_id AT1G75830.1  
At1g75840	chr1:028475964	0.0	W/28475964-28476062,28476431-28476518,28476606-28476715,28476828-28476891,28476974-28477038,28477117-28477182,28477279-28477377	AT1G75840.1  CDS  gene_syn ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, ARAC5, ATGP3, ATROP4, RAC-LIKE GTP BINDING PROTEIN, RAC-LIKE GTP BINDING PROTEIN 5, RHO-LIKE GTP BINDING PROTEIN 4, ROP4  gene ARAC5  function Belongs to the plant-specific ROP group of Rho GTPases; localized to the plasma membrane of tips of root hairs; involved in polar growth control.  go_component nucleus|GO:0005634|15469496|IDA  go_component nucleolus|GO:0005730|15469496|IDA  go_component cytoplasm|GO:0005737|15469496|IDA  go_component plasma membrane|GO:0005886|11387211|IDA  go_component phragmoplast|GO:0009524|15469496|IDA  go_process growth|GO:0040007|11387211|IMP  go_function GTPase activity|GO:0003924|11387211|ISS  go_function GTP binding|GO:0005525|9349271|TAS  product ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5); GTP binding / GTPase  note RAC-LIKE GTP BINDING PROTEIN 5 (ARAC5); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: growth; LOCATED IN: nucleolus, plasma membrane, nucleus, phragmoplast, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rho type (InterPro:IPR003578); BEST Arabidopsis thaliana protein match is: ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2); GTP binding (TAIR:AT1G20090.1); Has 19856 Blast hits to 19832 proteins in 571 species: Archae - 9; Bacteria - 54; Metazoa - 10835; Fungi - 2713; Plants - 1724; Viruses - 19; Other Eukaryotes - 4502 (source: NCBI BLink).  protein_id AT1G75840.1p  transcript_id AT1G75840.1  protein_id AT1G75840.1p  transcript_id AT1G75840.1  
At1g75850	chr1:028483779	0.0	C/28483779-28483874,28483604-28483700,28483396-28483519,28483057-28483242,28482892-28482979,28482653-28482709,28482479-28482568,28482264-28482386,28481791-28481865,28481649-28481708,28481017-28481133,28480578-28480817,28480436-28480501,28480237-28480326,28479842-28479931,28479647-28479733,28479273-28479341,28479024-28479104,28478811-28478918,28478622-28478725,28478364-28478477,28478053-28478263	AT1G75850.1  CDS  gene_syn T4O12.9, T4O12_9, VPS35 HOMOLOG B, VPS35B  gene VPS35B  go_component cellular_component|GO:0005575||ND  go_process intracellular protein transport|GO:0006886||ISS  go_process retrograde transport, endosome to Golgi|GO:0042147||ISS  product VPS35B (VPS35 HOMOLOG B)  note VPS35 HOMOLOG B (VPS35B); INVOLVED IN: intracellular protein transport, retrograde transport, endosome to Golgi; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 35 (InterPro:IPR005378); BEST Arabidopsis thaliana protein match is: VPS35A (VPS35 HOMOLOG A) (TAIR:AT2G17790.1); Has 470 Blast hits to 394 proteins in 156 species: Archae - 0; Bacteria - 1; Metazoa - 172; Fungi - 144; Plants - 39; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).  protein_id AT1G75850.1p  transcript_id AT1G75850.1  protein_id AT1G75850.1p  transcript_id AT1G75850.1  
At1g75860	chr1:028485663	0.0	C/28485663-28485743,28484844-28485162,28484255-28484748	AT1G75860.1  CDS  gene_syn T4O12.10, T4O12_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20100.1); Has 199 Blast hits to 180 proteins in 43 species: Archae - 0; Bacteria - 2; Metazoa - 49; Fungi - 12; Plants - 46; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT1G75860.1p  transcript_id AT1G75860.1  protein_id AT1G75860.1p  transcript_id AT1G75860.1  
At1g75870	chr1:028486532	0.0	W/28486532-28486672,28486758-28487114	AT1G75870.1  CDS  gene_syn T4O12.11, T4O12_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G75870.1p  transcript_id AT1G75870.1  protein_id AT1G75870.1p  transcript_id AT1G75870.1  
At1g75880	chr1:028490564	0.0	W/28490564-28490873,28491171-28491301,28491391-28491624,28491744-28491999,28492105-28492298	AT1G75880.2  CDS  gene_syn T4O12.12, T4O12_12  go_component extracellular region|GO:0005576|11431566|IMP  go_process sexual reproduction|GO:0019953|11431566|ISS  go_function carboxylesterase activity|GO:0004091||ISS  go_function acyltransferase activity|GO:0008415|7610479|TAS  go_function lipase activity|GO:0016298|11431566|ISS  go_function lipase activity|GO:0016298|8580973|ISS  go_function lipase activity|GO:0016298||ISS  product family II extracellular lipase 1 (EXL1)  note family II extracellular lipase 1 (EXL1); FUNCTIONS IN: lipase activity, carboxylesterase activity, acyltransferase activity; INVOLVED IN: sexual reproduction; LOCATED IN: extracellular region; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: family II extracellular lipase 2 (EXL2) (TAIR:AT1G75890.2); Has 2018 Blast hits to 2004 proteins in 249 species: Archae - 0; Bacteria - 402; Metazoa - 1; Fungi - 38; Plants - 1558; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT1G75880.2p  transcript_id AT1G75880.2  protein_id AT1G75880.2p  transcript_id AT1G75880.2  
At1g75880	chr1:028490564	0.0	W/28490564-28490873,28491171-28491304,28491391-28491624,28491744-28491999,28492105-28492298	AT1G75880.1  CDS  gene_syn T4O12.12, T4O12_12  go_component extracellular region|GO:0005576|11431566|IMP  go_process sexual reproduction|GO:0019953|11431566|ISS  go_function carboxylesterase activity|GO:0004091||ISS  go_function acyltransferase activity|GO:0008415|7610479|TAS  go_function lipase activity|GO:0016298|11431566|ISS  go_function lipase activity|GO:0016298|8580973|ISS  go_function lipase activity|GO:0016298||ISS  product family II extracellular lipase 1 (EXL1)  note family II extracellular lipase 1 (EXL1); FUNCTIONS IN: lipase activity, carboxylesterase activity, acyltransferase activity; INVOLVED IN: sexual reproduction; LOCATED IN: extracellular region; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: family II extracellular lipase 2 (EXL2) (TAIR:AT1G75890.2); Has 2027 Blast hits to 2012 proteins in 253 species: Archae - 0; Bacteria - 413; Metazoa - 1; Fungi - 36; Plants - 1558; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT1G75880.1p  transcript_id AT1G75880.1  protein_id AT1G75880.1p  transcript_id AT1G75880.1  
At1g75890	chr1:028493051	0.0	W/28493051-28493348,28493869-28493999,28494067-28494339,28494509-28494764,28494866-28495047	AT1G75890.1  CDS  gene_syn T4O12.240, T4O12_240  go_component extracellular region|GO:0005576|11431566|IMP  go_process sexual reproduction|GO:0019953|11431566|ISS  go_function carboxylesterase activity|GO:0004091||ISS  go_function acyltransferase activity|GO:0008415|7610479|TAS  go_function lipase activity|GO:0016298|11431566|ISS  go_function lipase activity|GO:0016298|8580973|ISS  go_function lipase activity|GO:0016298||ISS  product family II extracellular lipase 2 (EXL2)  note family II extracellular lipase 2 (EXL2); FUNCTIONS IN: lipase activity, carboxylesterase activity, acyltransferase activity; INVOLVED IN: sexual reproduction; LOCATED IN: extracellular region; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: family II extracellular lipase 1 (EXL1) (TAIR:AT1G75880.1); Has 1830 Blast hits to 1810 proteins in 156 species: Archae - 0; Bacteria - 222; Metazoa - 1; Fungi - 18; Plants - 1569; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT1G75890.1p  transcript_id AT1G75890.1  protein_id AT1G75890.1p  transcript_id AT1G75890.1  
At1g75890	chr1:028493051	0.0	W/28493051-28493348,28493869-28493999,28494106-28494339,28494509-28494764,28494866-28495047	AT1G75890.2  CDS  gene_syn T4O12.240, T4O12_240  go_component extracellular region|GO:0005576|11431566|IMP  go_process sexual reproduction|GO:0019953|11431566|ISS  go_function carboxylesterase activity|GO:0004091||ISS  go_function acyltransferase activity|GO:0008415|7610479|TAS  go_function lipase activity|GO:0016298|11431566|ISS  go_function lipase activity|GO:0016298|8580973|ISS  go_function lipase activity|GO:0016298||ISS  product family II extracellular lipase 2 (EXL2)  note family II extracellular lipase 2 (EXL2); FUNCTIONS IN: lipase activity, carboxylesterase activity, acyltransferase activity; INVOLVED IN: sexual reproduction; LOCATED IN: extracellular region; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: family II extracellular lipase 1 (EXL1) (TAIR:AT1G75880.2); Has 1890 Blast hits to 1871 proteins in 174 species: Archae - 0; Bacteria - 280; Metazoa - 1; Fungi - 16; Plants - 1572; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G75890.2p  transcript_id AT1G75890.2  protein_id AT1G75890.2p  transcript_id AT1G75890.2  
At1g75891	chr1:028493304	0.0	C/28493304-28494161	AT1G75891.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G75890  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G75891.1  
At1g75900	chr1:028499179	0.0	W/28499179-28499461,28499785-28499915,28500033-28500263,28500397-28500652,28500750-28500943	AT1G75900.1  CDS  gene_syn T4O12.13, T4O12_13  go_component extracellular region|GO:0005576|11431566|IMP  go_process sexual reproduction|GO:0019953|11431566|ISS  go_function carboxylesterase activity|GO:0004091||ISS  go_function acyltransferase activity|GO:0008415|7610479|TAS  go_function lipase activity|GO:0016298|11431566|ISS  go_function lipase activity|GO:0016298|8580973|ISS  go_function lipase activity|GO:0016298||ISS  product family II extracellular lipase 3 (EXL3)  note family II extracellular lipase 3 (EXL3); FUNCTIONS IN: lipase activity, carboxylesterase activity, acyltransferase activity; INVOLVED IN: sexual reproduction; LOCATED IN: extracellular region; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: family II extracellular lipase 1 (EXL1) (TAIR:AT1G75880.2); Has 1785 Blast hits to 1770 proteins in 149 species: Archae - 0; Bacteria - 196; Metazoa - 1; Fungi - 20; Plants - 1557; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G75900.1p  transcript_id AT1G75900.1  protein_id AT1G75900.1p  transcript_id AT1G75900.1  
At1g75910	chr1:028501511	0.0	W/28501511-28501748,28501873-28502003,28502119-28502355,28502447-28502708,28502933-28503096	AT1G75910.1  CDS  gene_syn EXL4, EXTRACELLULAR LIPASE 4, T4O12.250, T4O12_250  gene EXL4  function member of Lipase proteins  go_component extracellular region|GO:0005576|11431566|IMP  go_process sexual reproduction|GO:0019953|11431566|ISS  go_function carboxylesterase activity|GO:0004091||ISS  go_function acyltransferase activity|GO:0008415|7610479|TAS  go_function lipase activity|GO:0016298|11431566|ISS  go_function lipase activity|GO:0016298|8580973|ISS  go_function lipase activity|GO:0016298||ISS  product EXL4; acyltransferase/ carboxylesterase/ lipase  note EXL4; FUNCTIONS IN: lipase activity, carboxylesterase activity, acyltransferase activity; INVOLVED IN: sexual reproduction; LOCATED IN: extracellular region; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: family II extracellular lipase 5 (EXL5) (TAIR:AT1G75920.2); Has 1694 Blast hits to 1678 proteins in 132 species: Archae - 0; Bacteria - 155; Metazoa - 1; Fungi - 19; Plants - 1507; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G75910.1p  transcript_id AT1G75910.1  protein_id AT1G75910.1p  transcript_id AT1G75910.1  
At1g75920	chr1:028504612	0.0	W/28504612-28504681,28505730-28505816,28505919-28506049,28506127-28506360,28506451-28506712,28506860-28507023	AT1G75920.4  CDS  gene_syn T4O12.14, T4O12_14  go_component extracellular region|GO:0005576|11431566|IMP  go_process sexual reproduction|GO:0019953|11431566|ISS  go_function carboxylesterase activity|GO:0004091||ISS  go_function acyltransferase activity|GO:0008415|7610479|TAS  go_function lipase activity|GO:0016298|11431566|ISS  go_function lipase activity|GO:0016298|8580973|ISS  go_function lipase activity|GO:0016298||ISS  product family II extracellular lipase 5 (EXL5)  note family II extracellular lipase 5 (EXL5); FUNCTIONS IN: lipase activity, carboxylesterase activity, acyltransferase activity; INVOLVED IN: sexual reproduction; LOCATED IN: extracellular region; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: EXL4; acyltransferase/ carboxylesterase/ lipase (TAIR:AT1G75910.1); Has 1572 Blast hits to 1562 proteins in 96 species: Archae - 0; Bacteria - 88; Metazoa - 1; Fungi - 18; Plants - 1459; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G75920.4p  transcript_id AT1G75920.4  protein_id AT1G75920.4p  transcript_id AT1G75920.4  
At1g75920	chr1:028505576	0.0	W/28505576-28505816,28505919-28506049,28506127-28506360,28506451-28506712,28506860-28507023	AT1G75920.2  CDS  gene_syn T4O12.14, T4O12_14  go_component extracellular region|GO:0005576|11431566|IMP  go_process sexual reproduction|GO:0019953|11431566|ISS  go_function carboxylesterase activity|GO:0004091||ISS  go_function acyltransferase activity|GO:0008415|7610479|TAS  go_function lipase activity|GO:0016298|11431566|ISS  go_function lipase activity|GO:0016298|8580973|ISS  go_function lipase activity|GO:0016298||ISS  product family II extracellular lipase 5 (EXL5)  note family II extracellular lipase 5 (EXL5); FUNCTIONS IN: lipase activity, carboxylesterase activity, acyltransferase activity; INVOLVED IN: sexual reproduction; LOCATED IN: extracellular region; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: EXL4; acyltransferase/ carboxylesterase/ lipase (TAIR:AT1G75910.1); Has 1714 Blast hits to 1698 proteins in 133 species: Archae - 0; Bacteria - 166; Metazoa - 1; Fungi - 21; Plants - 1514; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G75920.2p  transcript_id AT1G75920.2  protein_id AT1G75920.2p  transcript_id AT1G75920.2  
At1g75920	chr1:028505576	0.0	W/28505576-28505816,28506012-28506049,28506127-28506360,28506451-28506712,28506860-28507023	AT1G75920.3  CDS  gene_syn T4O12.14, T4O12_14  go_component extracellular region|GO:0005576|11431566|IMP  go_process sexual reproduction|GO:0019953|11431566|ISS  go_function carboxylesterase activity|GO:0004091||ISS  go_function acyltransferase activity|GO:0008415|7610479|TAS  go_function lipase activity|GO:0016298|11431566|ISS  go_function lipase activity|GO:0016298|8580973|ISS  go_function lipase activity|GO:0016298||ISS  product family II extracellular lipase 5 (EXL5)  note family II extracellular lipase 5 (EXL5); FUNCTIONS IN: lipase activity, carboxylesterase activity, acyltransferase activity; INVOLVED IN: sexual reproduction; LOCATED IN: extracellular region; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: EXL4; acyltransferase/ carboxylesterase/ lipase (TAIR:AT1G75910.1); Has 1634 Blast hits to 1616 proteins in 123 species: Archae - 0; Bacteria - 129; Metazoa - 1; Fungi - 23; Plants - 1472; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G75920.3p  transcript_id AT1G75920.3  protein_id AT1G75920.3p  transcript_id AT1G75920.3  
At1g75920	chr1:028505591	0.0	W/28505591-28505861,28505919-28506049,28506127-28506360,28506451-28506712,28506860-28507023	AT1G75920.1  CDS  gene_syn T4O12.14, T4O12_14  go_component extracellular region|GO:0005576|11431566|IMP  go_process sexual reproduction|GO:0019953|11431566|ISS  go_function carboxylesterase activity|GO:0004091||ISS  go_function acyltransferase activity|GO:0008415|7610479|TAS  go_function lipase activity|GO:0016298|11431566|ISS  go_function lipase activity|GO:0016298|8580973|ISS  go_function lipase activity|GO:0016298||ISS  product family II extracellular lipase 5 (EXL5)  note family II extracellular lipase 5 (EXL5); FUNCTIONS IN: lipase activity, carboxylesterase activity, acyltransferase activity; INVOLVED IN: sexual reproduction; LOCATED IN: extracellular region; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: EXL4; acyltransferase/ carboxylesterase/ lipase (TAIR:AT1G75910.1); Has 1635 Blast hits to 1622 proteins in 115 species: Archae - 0; Bacteria - 116; Metazoa - 1; Fungi - 18; Plants - 1493; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G75920.1p  transcript_id AT1G75920.1  protein_id AT1G75920.1p  transcript_id AT1G75920.1  
At1g75930	chr1:028508109	0.0	W/28508109-28508349,28508508-28508641,28508749-28508979,28509075-28509336,28509545-28509708	AT1G75930.1  CDS  gene_syn EXL6, EXTRACELLULAR LIPASE 6, T4O12.260, T4O12_260  gene EXL6  function member of Lipase proteins  go_component extracellular region|GO:0005576|11431566|IMP  go_process sexual reproduction|GO:0019953|11431566|ISS  go_function carboxylesterase activity|GO:0004091||ISS  go_function acyltransferase activity|GO:0008415|7610479|TAS  go_function lipase activity|GO:0016298|11431566|ISS  go_function lipase activity|GO:0016298|8580973|ISS  go_function lipase activity|GO:0016298||ISS  product EXL6; acyltransferase/ carboxylesterase/ lipase  note EXL6; FUNCTIONS IN: lipase activity, carboxylesterase activity, acyltransferase activity; INVOLVED IN: sexual reproduction; LOCATED IN: extracellular region; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: family II extracellular lipase 5 (EXL5) (TAIR:AT1G75920.2); Has 1715 Blast hits to 1703 proteins in 138 species: Archae - 0; Bacteria - 156; Metazoa - 1; Fungi - 27; Plants - 1522; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G75930.1p  transcript_id AT1G75930.1  protein_id AT1G75930.1p  transcript_id AT1G75930.1  
At1g75940	chr1:028511198	0.0	W/28511198-28511365,28511495-28511564,28511681-28511736,28511826-28511901,28512014-28512091,28512186-28512273,28512353-28512617,28512726-28512841,28512920-28513137,28513255-28513292,28513392-28513494,28513611-28513722,28513825-28514044	AT1G75940.1  CDS  gene_syn ATA27, BETA GLUCOSIDASE 20, BGLU20, T4O12.15, T4O12_15  gene ATA27  function encodes a protein similar to the BGL4 beta-glucosidase from Brassica napus. The ATA27 protein is predicted to have an ER retention signal and an acidic isoelectric point, suggesting that it may be localized to the ER lumen.  go_component membrane|GO:0016020|17432890|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component endoplasmic reticulum lumen|GO:0005788|9687065|ISS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product ATA27; catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note ATA27; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endoplasmic reticulum lumen, membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU19 (BETA GLUCOSIDASE 19); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT3G21370.1); Has 5791 Blast hits to 5515 proteins in 797 species: Archae - 100; Bacteria - 3163; Metazoa - 600; Fungi - 133; Plants - 854; Viruses - 0; Other Eukaryotes - 941 (source: NCBI BLink).  protein_id AT1G75940.1p  transcript_id AT1G75940.1  protein_id AT1G75940.1p  transcript_id AT1G75940.1  
At1g75950	chr1:028516715	0.0	W/28516715-28517023,28517281-28517454	AT1G75950.1  CDS  gene_syn ARABIDOPSIS SKP1 HOMOLOGUE 1, ASK1, ATSKP1, S PHASE KINASE-ASSOCIATED PROTEIN 1, SKP1, SKP1A, T4O12.17, T4O12_17, UFO INTERACTING PROTEIN 1, UIP1  gene SKP1  function SKP1 is core component of the SCF family of E3 ubiquitin ligases and serves to tether the rest of the complex to an F-box protein, which provides specificity in binding to ubiquitin ligase substrate proteins. Predominately expressed from leptotene to pachytene. Negatively regulates recombination. Interacts with P0, a silencing suppressor protein encoded by poleroviruses by means of a conserved minimal F-box motif.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component ubiquitin ligase complex|GO:0000151|11019805|TAS  go_component nucleus|GO:0005634|11387208|IDA  go_component nucleus|GO:0005634||NAS  go_component cytoplasm|GO:0005737||NAS  go_component spindle|GO:0005819|11387208|IDA  go_component phragmoplast|GO:0009524|11387208|IDA  go_component SCF ubiquitin ligase complex|GO:0019005||NAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10778750|TAS  go_process mitosis|GO:0007067|9530878|TAS  go_process male meiosis|GO:0007140|10500191|IMP  go_process negative regulation of DNA recombination|GO:0045910|16283376|IMP  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|14749489|IPI  go_function protein binding|GO:0005515|15659098|IPI  product SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1); protein binding / ubiquitin-protein ligase  note S PHASE KINASE-ASSOCIATED PROTEIN 1 (SKP1); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: negative regulation of DNA recombination, response to cadmium ion, mitosis, ubiquitin-dependent protein catabolic process, male meiosis; LOCATED IN: in 7 components; EXPRESSED IN: 35 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: ASK2 (ARABIDOPSIS SKP1-LIKE 2); protein binding / ubiquitin-protein ligase (TAIR:AT5G42190.1); Has 1113 Blast hits to 1110 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 491; Fungi - 112; Plants - 364; Viruses - 11; Other Eukaryotes - 135 (source: NCBI BLink).  protein_id AT1G75950.1p  transcript_id AT1G75950.1  protein_id AT1G75950.1p  transcript_id AT1G75950.1  
At1g75960	chr1:028518187	0.0	W/28518187-28519821	AT1G75960.1  CDS  gene_syn T4O12.18, T4O12_18  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  product AMP-binding protein, putative  note AMP-binding protein, putative; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-binding protein, putative (TAIR:AT5G16340.1); Has 50330 Blast hits to 46955 proteins in 2178 species: Archae - 558; Bacteria - 27493; Metazoa - 2750; Fungi - 2156; Plants - 1180; Viruses - 1; Other Eukaryotes - 16192 (source: NCBI BLink).  protein_id AT1G75960.1p  transcript_id AT1G75960.1  protein_id AT1G75960.1p  transcript_id AT1G75960.1  
At1g75970	chr1:028519985	0.0	C/28519985-28520056	AT1G75970.1  tRNA  gene_syn 51416.TRNA-GLU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Glu (anticodon: TTC)  transcript_id AT1G75970.1  
At1g75980	chr1:028524062	0.0	C/28524062-28524302,28523926-28523974,28523719-28523845,28523502-28523572,28523333-28523405,28522936-28523052	AT1G75980.1  CDS  gene_syn T4O12.20, T4O12_20  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Single hybrid motif (InterPro:IPR011053); Has 156 Blast hits to 156 proteins in 78 species: Archae - 4; Bacteria - 4; Metazoa - 109; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT1G75980.1p  transcript_id AT1G75980.1  protein_id AT1G75980.1p  transcript_id AT1G75980.1  
At1g75990	chr1:028526640	0.0	C/28526640-28526718,28526354-28526544,28526104-28526241,28525880-28526016,28525624-28525789,28525217-28525456,28524623-28525135	AT1G75990.1  CDS  gene_syn T4O12.21, T4O12_21  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function enzyme regulator activity|GO:0030234||IEA  go_component proteasome regulatory particle, lid subcomplex|GO:0008541||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_process protein catabolic process|GO:0030163|11742986|TAS  product 26S proteasome regulatory subunit S3, putative (RPN3)  note 26S proteasome regulatory subunit S3, putative (RPN3); FUNCTIONS IN: enzyme regulator activity; INVOLVED IN: protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: plasma membrane, proteasome regulatory particle, lid subcomplex, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component region PCI (InterPro:IPR000717), PCI/PINT associated module (InterPro:IPR013143), 26S proteasome regulatory subunit, C-terminal (InterPro:IPR013586); BEST Arabidopsis thaliana protein match is: EMB2719 (EMBRYO DEFECTIVE 2719); enzyme regulator (TAIR:AT1G20200.1); Has 526 Blast hits to 526 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 256; Fungi - 94; Plants - 87; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT1G75990.1p  transcript_id AT1G75990.1  protein_id AT1G75990.1p  transcript_id AT1G75990.1  
At1g76000	chr1:028527767	0.0	W/28527767-28527838	AT1G76000.1  tRNA  gene_syn 51416.TRNA-ASP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asp (anticodon: GTC)  transcript_id AT1G76000.1  
At1g76010	chr1:028530366	0.0	C/28530366-28530488,28529983-28530063,28529806-28529894,28529616-28529690,28529412-28529476,28529255-28529326,28528708-28529145,28528505-28528614	AT1G76010.1  CDS  gene_syn T4O12.22, T4O12_22  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alba, DNA/RNA-binding protein (InterPro:IPR002775); BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT1G20220.1); Has 75246 Blast hits to 26916 proteins in 1384 species: Archae - 54; Bacteria - 14987; Metazoa - 38865; Fungi - 4655; Plants - 6135; Viruses - 798; Other Eukaryotes - 9752 (source: NCBI BLink).  protein_id AT1G76010.1p  transcript_id AT1G76010.1  protein_id AT1G76010.1p  transcript_id AT1G76010.1  
At1g76020	chr1:028533292	0.0	C/28533292-28533542,28532969-28533071,28532682-28532843,28532243-28532404	AT1G76020.1  CDS  gene_syn T4O12.23, T4O12_23  go_component cell wall|GO:0005618|15593128|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20225.1); Has 118 Blast hits to 116 proteins in 37 species: Archae - 0; Bacteria - 51; Metazoa - 12; Fungi - 4; Plants - 28; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G76020.1p  transcript_id AT1G76020.1  protein_id AT1G76020.1p  transcript_id AT1G76020.1  
At1g76030	chr1:028534134	0.0	W/28534134-28534185,28534390-28534445,28534540-28534638,28534751-28534810,28534920-28535031,28535121-28535329,28535575-28535703,28535806-28535943,28536035-28536185,28536279-28536361,28536462-28536509,28536593-28536916	AT1G76030.1  CDS  gene_syn VHA-B1  function Encodes the vacuolar ATP synthase subunit B1. This subunit was shown to interact with the gene product of hexokinase1 (ATHXK1). This interaction, however, is solely restricted to the nucleus.  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances|GO:0016820||IEA  go_function hydrogen ion transporting ATP synthase activity, rotational mechanism|GO:0046933||IEA  go_function proton-transporting ATPase activity, rotational mechanism|GO:0046961||IEA  go_process glucose mediated signaling|GO:0010255|17081979|IMP  go_function hydrogen ion transporting ATP synthase activity, rotational mechanism|GO:0046933||ISS  product vacuolar ATP synthase subunit B / V-ATPase B subunit / vacuolar proton pump B subunit / V-ATPase 57 kDa subunit  note vacuolar ATP synthase subunit B / V-ATPase B subunit / vacuolar proton pump B subunit / V-ATPase 57 kDa subunit; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: glucose mediated signaling, response to cadmium ion; LOCATED IN: plasma membrane, chloroplast, vacuole, membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal (InterPro:IPR000793), ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR004100), ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding (InterPro:IPR000194), ATPase, V1 complex, subunit B (InterPro:IPR005723); BEST Arabidopsis thaliana protein match is: hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism (TAIR:AT1G20260.1); Has 29392 Blast hits to 28722 proteins in 7059 species: Archae - 676; Bacteria - 12473; Metazoa - 1355; Fungi - 539; Plants - 6694; Viruses - 0; Other Eukaryotes - 7655 (source: NCBI BLink).  protein_id AT1G76030.1p  transcript_id AT1G76030.1  protein_id AT1G76030.1p  transcript_id AT1G76030.1  
At1g76040	chr1:028537743	0.0	W/28537743-28538541,28538991-28539134,28539239-28539391,28539492-28539604,28539684-28539851,28539931-28540058,28540174-28540273,28540368-28540448	AT1G76040.2  CDS  gene_syn CPK29, T4O12.25, T4O12_25  gene CPK29  function member of Calcium Dependent Protein Kinase  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  go_function kinase activity|GO:0016301||ISS  product CPK29; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note CPK29; FUNCTIONS IN: in 7 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), Tyrosine protein kinase (InterPro:IPR001245), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CPK15; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT4G21940.1); Has 105646 Blast hits to 97325 proteins in 2756 species: Archae - 63; Bacteria - 8081; Metazoa - 45525; Fungi - 12888; Plants - 18158; Viruses - 470; Other Eukaryotes - 20461 (source: NCBI BLink).  protein_id AT1G76040.2p  transcript_id AT1G76040.2  protein_id AT1G76040.2p  transcript_id AT1G76040.2  
At1g76040	chr1:028538906	0.0	W/28538906-28539134,28539239-28539391,28539492-28539604,28539684-28539851,28539931-28540058,28540174-28540273,28540368-28540448	AT1G76040.1  CDS  gene_syn CPK29, T4O12.25, T4O12_25  gene CPK29  function member of Calcium Dependent Protein Kinase  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  go_function kinase activity|GO:0016301||ISS  product CPK29; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase  note CPK29; FUNCTIONS IN: calmodulin-dependent protein kinase activity, protein kinase activity, kinase activity, calcium ion binding, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CPK15; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT4G21940.1); Has 55054 Blast hits to 47739 proteins in 1761 species: Archae - 3; Bacteria - 812; Metazoa - 25913; Fungi - 9281; Plants - 7423; Viruses - 38; Other Eukaryotes - 11584 (source: NCBI BLink).  protein_id AT1G76040.1p  transcript_id AT1G76040.1  protein_id AT1G76040.1p  transcript_id AT1G76040.1  
At1g76050	chr1:028540858	0.0	W/28540858-28541211,28541290-28541433,28541506-28541742,28541813-28542015,28542154-28542232,28542467-28542642,28542727-28542826	AT1G76050.2  CDS  gene_syn T4O12.210, T4O12_210  go_component chloroplast|GO:0009507||IEA  go_process pseudouridine synthesis|GO:0001522||IEA  go_function pseudouridine synthase activity|GO:0009982|18599582|TAS  go_function pseudouridine synthase activity|GO:0009982||ISS  product pseudouridine synthase family protein  note pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis; LOCATED IN: chloroplast; EXPRESSED IN: leaf lamina base, shoot, stem, leaf whorl, embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, RluD (InterPro:IPR006225), Pseudouridine synthase (InterPro:IPR006145), Pseudouridine synthase, conserved site (InterPro:IPR006224), RNA-binding S4 (InterPro:IPR002942); BEST Arabidopsis thaliana protein match is: pseudouridine synthase family protein (TAIR:AT3G52260.2); Has 12558 Blast hits to 12546 proteins in 1459 species: Archae - 12; Bacteria - 7400; Metazoa - 221; Fungi - 125; Plants - 119; Viruses - 0; Other Eukaryotes - 4681 (source: NCBI BLink).  protein_id AT1G76050.2p  transcript_id AT1G76050.2  protein_id AT1G76050.2p  transcript_id AT1G76050.2  
At1g76050	chr1:028540858	0.0	W/28540858-28541211,28541290-28541433,28541506-28541742,28541813-28542019	AT1G76050.1  CDS  gene_syn T4O12.210, T4O12_210  go_component chloroplast|GO:0009507||IEA  go_process pseudouridine synthesis|GO:0001522||IEA  go_function pseudouridine synthase activity|GO:0009982|18599582|TAS  go_function pseudouridine synthase activity|GO:0009982||ISS  product pseudouridine synthase family protein  note pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis; LOCATED IN: chloroplast; EXPRESSED IN: leaf lamina base, shoot, stem, leaf whorl, embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase (InterPro:IPR006145), Pseudouridine synthase, conserved site (InterPro:IPR006224), RNA-binding S4 (InterPro:IPR002942); Has 9570 Blast hits to 9570 proteins in 1389 species: Archae - 12; Bacteria - 6023; Metazoa - 79; Fungi - 54; Plants - 36; Viruses - 0; Other Eukaryotes - 3366 (source: NCBI BLink).  protein_id AT1G76050.1p  transcript_id AT1G76050.1  protein_id AT1G76050.1p  transcript_id AT1G76050.1  
At1g76060	chr1:028543367	0.0	C/28543367-28543840	AT1G76060.1  CDS  gene_syn EMB1793, EMBRYO DEFECTIVE 1793, T4O12.26, T4O12_26  gene EMB1793  function mutant has Embryo defect  go_component mitochondrion|GO:0005739||IEA  go_function catalytic activity|GO:0003824||ISS  product EMB1793 (EMBRYO DEFECTIVE 1793); catalytic  note EMBRYO DEFECTIVE 1793 (EMB1793); FUNCTIONS IN: catalytic activity; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 23 Blast hits to 23 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G76060.1p  transcript_id AT1G76060.1  protein_id AT1G76060.1p  transcript_id AT1G76060.1  
At1g76062	chr1:028544454	0.0	C/28544454-28544853	AT1G76062.1  miRNA  gene_syn MICRORNA835A, MIR835A  gene MIR835A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUCUUGCAUAUGUUCUUUAUC  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR835A (MICRORNA835A); miRNA  transcript_id AT1G76062.1  
At1g76065	chr1:028545204	0.0	C/28545204-28545306,28544899-28545038	AT1G76065.1  CDS  product unknown protein  note CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 53 Blast hits to 53 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 32; Fungi - 9; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G76065.1p  transcript_id AT1G76065.1  protein_id AT1G76065.1p  transcript_id AT1G76065.1  
At1g76070	chr1:028546617	0.0	W/28546617-28547435	AT1G76070.1  CDS  gene_syn T23E18.1, T23E18_1  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20310.1); Has 36 Blast hits to 36 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G76070.1p  transcript_id AT1G76070.1  protein_id AT1G76070.1p  transcript_id AT1G76070.1  
At1g76080	chr1:028548850	0.0	C/28548850-28549348,28548063-28548472	AT1G76080.1  CDS  gene_syn ARABIDOPSIS THALIANA CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD, ATCDSP32, CDSP32, CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD, T23E18.2, T23E18_2  gene CDSP32  function Encodes a thioredoxin localized in chloroplast stroma. Known as CDSP32 (CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD).  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid|GO:0009534|19259774|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast stroma|GO:0009570|19259774|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process cell redox homeostasis|GO:0045454||IEA  product CDSP32 (CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD)  note CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD (CDSP32); INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope, chloroplast thylakoid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATTRX4; oxidoreductase, acting on sulfur group of donors, disulfide as acceptor (TAIR:AT1G19730.1); Has 2101 Blast hits to 1916 proteins in 486 species: Archae - 34; Bacteria - 593; Metazoa - 537; Fungi - 47; Plants - 455; Viruses - 3; Other Eukaryotes - 432 (source: NCBI BLink).  protein_id AT1G76080.1p  transcript_id AT1G76080.1  protein_id AT1G76080.1p  transcript_id AT1G76080.1  
At1g76090	chr1:028550592	0.0	C/28550592-28551671	AT1G76090.1  CDS  gene_syn SMT3, STEROL METHYLTRANSFERASE 3  gene SMT3  function Encodes S-adenosyl-methionine-sterol-C-methyltransferase, an enzyme in the sterol biosynthetic pathway.  go_component endoplasmic reticulum|GO:0005783|12215504|TAS  go_process sterol biosynthetic process|GO:0016126|12215504|TAS  go_function sterol 24-C-methyltransferase activity|GO:0003838|9208946|TAS  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757||ISS  product SMT3 (STEROL METHYLTRANSFERASE 3); S-adenosylmethionine-dependent methyltransferase/ sterol 24-C-methyltransferase  note STEROL METHYLTRANSFERASE 3 (SMT3); FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, sterol 24-C-methyltransferase activity; INVOLVED IN: sterol biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sterol methyltransferase C-terminal (InterPro:IPR013705), Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: SMT2 (STEROL METHYLTRANSFERASE 2); S-adenosylmethionine-dependent methyltransferase (TAIR:AT1G20330.1); Has 6507 Blast hits to 6503 proteins in 1152 species: Archae - 188; Bacteria - 3393; Metazoa - 115; Fungi - 275; Plants - 294; Viruses - 0; Other Eukaryotes - 2242 (source: NCBI BLink).  protein_id AT1G76090.1p  transcript_id AT1G76090.1  protein_id AT1G76090.1p  transcript_id AT1G76090.1  
At1g76100	chr1:028554217	0.0	C/28554217-28554732	AT1G76100.1  CDS  gene_syn PETE1, PLASTOCYANIN 1, T23E18.3, T23E18_3  gene PETE1  function One of two Arabidopsis plastocyanin genes. Expressed at 1/10th level of PETE2. Does not respond to increased copper levels and is thought to be the isoform that participates in electron transport under copper-limiting conditions.  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  go_process response to copper ion|GO:0046688|19084994|IEP  go_function copper ion binding|GO:0005507||ISS  product PETE1 (PLASTOCYANIN 1); copper ion binding / electron carrier  note PLASTOCYANIN 1 (PETE1); FUNCTIONS IN: electron carrier activity, copper ion binding; INVOLVED IN: response to copper ion; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Blue (type 1) copper protein (InterPro:IPR001235), Cupredoxin (InterPro:IPR008972), Plastocyanin (InterPro:IPR002387), Blue (type 1) copper domain (InterPro:IPR000923); BEST Arabidopsis thaliana protein match is: DRT112; copper ion binding / electron carrier (TAIR:AT1G20340.1); Has 1051 Blast hits to 1047 proteins in 175 species: Archae - 66; Bacteria - 307; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 4; Other Eukaryotes - 507 (source: NCBI BLink).  protein_id AT1G76100.1p  transcript_id AT1G76100.1  protein_id AT1G76100.1p  transcript_id AT1G76100.1  
At1g76110	chr1:028557287	0.0	C/28557287-28557465,28557114-28557192,28556841-28557003,28556285-28556383,28555496-28555878,28555287-28555400	AT1G76110.1  CDS  gene_syn T23E18.4, T23E18_4  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein  note high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910), AT-rich interaction region (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein (TAIR:AT1G04880.1); Has 2678 Blast hits to 2260 proteins in 209 species: Archae - 0; Bacteria - 0; Metazoa - 2089; Fungi - 188; Plants - 168; Viruses - 0; Other Eukaryotes - 233 (source: NCBI BLink).  protein_id AT1G76110.1p  transcript_id AT1G76110.1  protein_id AT1G76110.1p  transcript_id AT1G76110.1  
At1g76120	chr1:028559224	0.0	C/28559224-28560294	AT1G76120.2  CDS  gene_syn T23E18.5, T23E18_5  go_process pseudouridine synthesis|GO:0001522||IEA  go_process tRNA processing|GO:0008033||IEA  go_component cellular_component|GO:0005575||ND  go_function pseudouridine synthase activity|GO:0009982|18599582|TAS  go_function pseudouridine synthase activity|GO:0009982||ISS  product tRNA pseudouridine synthase family protein  note tRNA pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: tRNA processing, pseudouridine synthesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA pseudouridine synthase (InterPro:IPR001406); BEST Arabidopsis thaliana protein match is: tRNA pseudouridine synthase family protein (TAIR:AT1G20370.1); Has 2106 Blast hits to 1946 proteins in 705 species: Archae - 76; Bacteria - 1060; Metazoa - 269; Fungi - 192; Plants - 66; Viruses - 0; Other Eukaryotes - 443 (source: NCBI BLink).  protein_id AT1G76120.2p  transcript_id AT1G76120.2  protein_id AT1G76120.2p  transcript_id AT1G76120.2  
At1g76120	chr1:028559228	0.0	C/28559228-28560294,28558813-28559137	AT1G76120.1  CDS  gene_syn T23E18.5, T23E18_5  go_process pseudouridine synthesis|GO:0001522||IEA  go_process tRNA processing|GO:0008033||IEA  go_component cellular_component|GO:0005575||ND  go_function pseudouridine synthase activity|GO:0009982|18599582|TAS  go_function pseudouridine synthase activity|GO:0009982||ISS  product tRNA pseudouridine synthase family protein  note tRNA pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: tRNA processing, pseudouridine synthesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA pseudouridine synthase (InterPro:IPR001406); BEST Arabidopsis thaliana protein match is: tRNA pseudouridine synthase family protein (TAIR:AT1G20370.1); Has 2167 Blast hits to 1972 proteins in 706 species: Archae - 78; Bacteria - 1060; Metazoa - 272; Fungi - 194; Plants - 74; Viruses - 0; Other Eukaryotes - 489 (source: NCBI BLink).  protein_id AT1G76120.1p  transcript_id AT1G76120.1  protein_id AT1G76120.1p  transcript_id AT1G76120.1  
At1g76130	chr1:028561647	0.0	W/28561647-28561664,28561756-28561789,28561891-28561928,28562012-28562138,28562245-28562471,28562556-28562701,28562787-28562899,28563004-28563092,28563187-28563309,28563387-28563422,28563513-28563611,28563723-28563914	AT1G76130.1  CDS  gene_syn ALPHA-AMYLASE-LIKE 2, AMY2, ARABIDOPSIS THALIANA ALPHA-AMYLASE-LIKE 2, ATAMY2, T23E18.6, T23E18_6  gene AMY2  function alpha-amylase, putative / 1,4-alpha-D-glucan glucanohydrolase, putative, strong similarity to alpha-amylase GI:7532799 from (Malus x domestica);contains Pfam profile PF00128: Alpha amylase, catalytic domain. Predicted to be secreted based on SignalP analysis.  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process glycogen catabolic process|GO:0005980||IEA  go_function catalytic activity|GO:0003824||IEA  go_function alpha-amylase activity|GO:0004556||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function cation binding|GO:0043169||IEA  go_component extracellular region|GO:0005576|15637061|TAS  go_function alpha-amylase activity|GO:0004556||ISS  product AMY2 (ALPHA-AMYLASE-LIKE 2); alpha-amylase/ calcium ion binding / catalytic/ cation binding  note ALPHA-AMYLASE-LIKE 2 (AMY2); FUNCTIONS IN: cation binding, catalytic activity, alpha-amylase activity, calcium ion binding; INVOLVED IN: carbohydrate metabolic process, glycogen catabolic process; LOCATED IN: extracellular region; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase family 13 (InterPro:IPR006046), Alpha-amylase, plant (InterPro:IPR013775), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycosyl hydrolase, family 13, catalytic region (InterPro:IPR006047), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Alpha-amylase, C-terminal beta-sheet (InterPro:IPR012850); BEST Arabidopsis thaliana protein match is: AMY3 (ALPHA-AMYLASE-LIKE 3); alpha-amylase (TAIR:AT1G69830.1); Has 1548 Blast hits to 1543 proteins in 559 species: Archae - 31; Bacteria - 755; Metazoa - 154; Fungi - 262; Plants - 286; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT1G76130.1p  transcript_id AT1G76130.1  protein_id AT1G76130.1p  transcript_id AT1G76130.1  
At1g76135	chr1:028568808	0.0	W/28568808-28568928	AT1G76135.1  miRNA  gene_syn MICRORNA394B, MIR394B  gene MIR394B  function Encodes a microRNA that targets one member of the F-box family. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGGCAUUCUGUCCACCUCC. It targets F-box protein AT1g27340.  product MIR394B (MICRORNA394B); miRNA  transcript_id AT1G76135.1  
At1g76140	chr1:028571187	0.0	W/28571187-28571488,28571719-28571938,28572026-28572226,28572321-28572391,28572480-28572642,28572855-28573448,28573539-28573919,28574038-28574113,28574198-28574261,28574350-28574485,28574584-28574697,28574787-28574852	AT1G76140.1  CDS  gene_syn T23E18.8, T23E18_8  go_component chloroplast|GO:0009507|18431481|IDA  go_process proteolysis|GO:0006508||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function serine-type peptidase activity|GO:0008236||IEA  go_process proteolysis|GO:0006508||ISS  product serine-type endopeptidase/ serine-type peptidase  note serine-type endopeptidase/ serine-type peptidase; FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase active site region (InterPro:IPR001375), Peptidase S9A, oligopeptidase, N-terminal beta-propeller (InterPro:IPR004106), Peptidase S9A, prolyl oligopeptidase (InterPro:IPR002470); BEST Arabidopsis thaliana protein match is: prolyl oligopeptidase, putative / prolyl endopeptidase, putative / post-proline cleaving enzyme, putative (TAIR:AT1G20380.1); Has 6191 Blast hits to 6152 proteins in 790 species: Archae - 63; Bacteria - 2286; Metazoa - 285; Fungi - 27; Plants - 114; Viruses - 0; Other Eukaryotes - 3416 (source: NCBI BLink).  protein_id AT1G76140.1p  transcript_id AT1G76140.1  protein_id AT1G76140.1p  transcript_id AT1G76140.1  
At1g76140	chr1:028571187	0.0	W/28571187-28571488,28571719-28571938,28572026-28572226,28572321-28572391,28572480-28572642,28572855-28573448,28573539-28573919,28574038-28574113,28574198-28574261,28574350-28574485,28574593-28574697,28574787-28574852	AT1G76140.2  CDS  gene_syn T23E18.8, T23E18_8  go_component chloroplast|GO:0009507|18431481|IDA  go_process proteolysis|GO:0006508||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function serine-type peptidase activity|GO:0008236||IEA  go_process proteolysis|GO:0006508||ISS  product serine-type endopeptidase/ serine-type peptidase  note serine-type endopeptidase/ serine-type peptidase; FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase active site region (InterPro:IPR001375), Peptidase S9A, oligopeptidase, N-terminal beta-propeller (InterPro:IPR004106), Peptidase S9A, prolyl oligopeptidase (InterPro:IPR002470); BEST Arabidopsis thaliana protein match is: prolyl oligopeptidase, putative / prolyl endopeptidase, putative / post-proline cleaving enzyme, putative (TAIR:AT1G20380.1); Has 6247 Blast hits to 6206 proteins in 797 species: Archae - 64; Bacteria - 2318; Metazoa - 290; Fungi - 27; Plants - 116; Viruses - 0; Other Eukaryotes - 3432 (source: NCBI BLink).  protein_id AT1G76140.2p  transcript_id AT1G76140.2  protein_id AT1G76140.2p  transcript_id AT1G76140.2  
At1g76150	chr1:028577578	0.0	C/28577578-28577637,28577445-28577467,28577185-28577290,28577027-28577097,28576861-28576933,28576635-28576674,28576459-28576531,28576222-28576372,28576024-28576094,28575437-28575610,28575236-28575323	AT1G76150.1  CDS  gene_syn T23E18.9, T23E18_9  function Encodes a monofunctional enoyl-CoA hydratase 2, involved in the degradation of even cis-unsaturated fatty acids, gene expression is enhanced during the first 2 days of germination, as well as in senescent leaves.  go_component peroxisome|GO:0005777|17951448|IDA  go_component peroxisome|GO:0005777|16982622|IDA  go_process metabolic process|GO:0008152||ISS  go_process fatty acid beta-oxidation, unsaturated, even number|GO:0033542|16982622|IMP  go_function oxidoreductase activity|GO:0016491||ISS  go_function 3R-hydroxyacyl-CoA dehydratase activity|GO:0080023|16982622|IDA  go_function 3R-hydroxyacyl-CoA dehydratase activity|GO:0080023|16982622|IGI  product maoC-like dehydratase domain-containing protein  note maoC-like dehydratase domain-containing protein; FUNCTIONS IN: oxidoreductase activity, 3R-hydroxyacyl-CoA dehydratase activity; INVOLVED IN: fatty acid beta-oxidation, unsaturated, even number, metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MaoC-like dehydratase (InterPro:IPR002539), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); Has 1460 Blast hits to 1460 proteins in 330 species: Archae - 4; Bacteria - 675; Metazoa - 151; Fungi - 261; Plants - 19; Viruses - 0; Other Eukaryotes - 350 (source: NCBI BLink).  protein_id AT1G76150.1p  transcript_id AT1G76150.1  protein_id AT1G76150.1p  transcript_id AT1G76150.1  
At1g76160	chr1:028580880	0.0	C/28580880-28581020,28580682-28580791,28579844-28580114,28579583-28579682,28579140-28579485,28578680-28579045,28578514-28578592,28578211-28578423	AT1G76160.1  CDS  gene_syn SKU5 Similar 5, T23E18.10, T23E18_10, sks5  gene sks5  go_component cell wall|GO:0005618|14595688|IDA  go_component cell wall|GO:0005618|15593128|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function copper ion binding|GO:0005507||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product sks5 (SKU5 Similar 5); copper ion binding / oxidoreductase  note SKU5 Similar 5 (sks5); FUNCTIONS IN: oxidoreductase activity, copper ion binding; LOCATED IN: apoplast, cell wall, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKS6 (SKU5-SIMILAR 6); pectinesterase (TAIR:AT1G41830.1); Has 3613 Blast hits to 3566 proteins in 612 species: Archae - 8; Bacteria - 911; Metazoa - 254; Fungi - 1504; Plants - 791; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink).  protein_id AT1G76160.1p  transcript_id AT1G76160.1  protein_id AT1G76160.1p  transcript_id AT1G76160.1  
At1g76170	chr1:028586188	0.0	C/28586188-28586225,28585852-28585958,28585598-28585740,28585404-28585523,28585192-28585304,28585002-28585094,28584870-28584910,28584649-28584715,28584455-28584566,28584179-28584343	AT1G76170.1  CDS  gene_syn T23E18.11, T23E18_11  go_process tRNA processing|GO:0008033||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  product ATP binding  note ATP binding; FUNCTIONS IN: ATP binding; INVOLVED IN: tRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Uncharacterised protein family UPF0021 (InterPro:IPR000541), PP-loop (InterPro:IPR011063), 2-thiocytidine tRNA biosynthesis protein, TtcA (InterPro:IPR012089); BEST Arabidopsis thaliana protein match is: ATP binding (TAIR:AT2G44270.1); Has 2817 Blast hits to 2768 proteins in 981 species: Archae - 189; Bacteria - 1921; Metazoa - 118; Fungi - 121; Plants - 38; Viruses - 0; Other Eukaryotes - 430 (source: NCBI BLink).  protein_id AT1G76170.1p  transcript_id AT1G76170.1  protein_id AT1G76170.1p  transcript_id AT1G76170.1  
At1g76180	chr1:028587409	0.0	C/28587409-28587657,28587013-28587321	AT1G76180.1  CDS  gene_syn EARLY RESPONSE TO DEHYDRATION 14, ERD14, T23E18.12, T23E18_12  gene ERD14  function Encodes a dehydrin protein whose expression is induced early on in response to dehydration stress. This gene s expression to cold occurs in two waves, with early induction occurring within 1 h and secondary induction occurring 5 h after the beginning of cold stress. Expression is also induced in response to ABA but not in response to 2,4-D, BA, and GA3. ERD14 protein is capable of binding Ca2+, especially when the protein is phosphorylated.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to stress|GO:0006950||ISS  go_process response to desiccation|GO:0009269|11292073|IEP  go_process response to cold|GO:0009409|11292073|IEP  go_process response to water deprivation|GO:0009414|8075396|IEP  go_process response to water|GO:0009415||ISS  go_process response to abscisic acid stimulus|GO:0009737|11292073|IEP  go_process response to gibberellin stimulus|GO:0009739|8069491|IEP  go_function calcium ion binding|GO:0005509|12917402|IDA  product ERD14 (EARLY RESPONSE TO DEHYDRATION 14); calcium ion binding  note EARLY RESPONSE TO DEHYDRATION 14 (ERD14); FUNCTIONS IN: calcium ion binding; INVOLVED IN: in 7 processes; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10); actin binding (TAIR:AT1G20450.2); Has 4478 Blast hits to 2962 proteins in 320 species: Archae - 4; Bacteria - 195; Metazoa - 1393; Fungi - 252; Plants - 1124; Viruses - 16; Other Eukaryotes - 1494 (source: NCBI BLink).  protein_id AT1G76180.1p  transcript_id AT1G76180.1  protein_id AT1G76180.1p  transcript_id AT1G76180.1  
At1g76185	chr1:028590497	0.0	W/28590497-28590609,28590950-28591157	AT1G76185.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20460.1); Has 19 Blast hits to 19 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G76185.1p  transcript_id AT1G76185.1  protein_id AT1G76185.1p  transcript_id AT1G76185.1  
At1g76190	chr1:028592225	0.0	W/28592225-28592596	AT1G76190.1  CDS  gene_syn T23E18.13, T23E18_13  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf lamina base, stamen, leaf; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT1G20470.1); Has 640 Blast hits to 628 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 639; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G76190.1p  transcript_id AT1G76190.1  protein_id AT1G76190.1p  transcript_id AT1G76190.1  
At1g76200	chr1:028593351	0.0	W/28593351-28593457,28593774-28593819,28593924-28593980	AT1G76200.1  CDS  gene_syn T23E18.30, T23E18_30  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: respiratory chain complex I; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 59 Blast hits to 59 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 29; Plants - 27; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G76200.1p  transcript_id AT1G76200.1  protein_id AT1G76200.1p  transcript_id AT1G76200.1  
At1g76210	chr1:028595202	0.0	C/28595202-28595882	AT1G76210.1  CDS  gene_syn T23E18.14, T23E18_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF241, plant (InterPro:IPR004320); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20520.1); Has 231 Blast hits to 227 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 231; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G76210.1p  transcript_id AT1G76210.1  protein_id AT1G76210.1p  transcript_id AT1G76210.1  
At1g76220	chr1:028597530	0.0	C/28597530-28598300	AT1G76220.1  CDS  gene_syn T23E18.15, T23E18_15  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: root, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF241, plant (InterPro:IPR004320); Has 242 Blast hits to 238 proteins in 27 species: Archae - 3; Bacteria - 6; Metazoa - 13; Fungi - 0; Plants - 202; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G76220.1p  transcript_id AT1G76220.1  protein_id AT1G76220.1p  transcript_id AT1G76220.1  
At1g76230	chr1:028599991	0.0	C/28599991-28600380	AT1G76230.1  CDS  gene_syn T23E18.16, T23E18_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20100.1); Has 16 Blast hits to 12 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G76230.1p  transcript_id AT1G76230.1  protein_id AT1G76230.1p  transcript_id AT1G76230.1  
At1g76240	chr1:028602949	0.0	C/28602949-28603875	AT1G76240.1  CDS  gene_syn T23E18.17, T23E18_17  go_component chloroplast|GO:0009507||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF241, plant (InterPro:IPR004320); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17080.1); Has 211 Blast hits to 207 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 207; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G76240.1p  transcript_id AT1G76240.1  protein_id AT1G76240.1p  transcript_id AT1G76240.1  
At1g76250	chr1:028608412	0.0	C/28608412-28608942,28606561-28607334	AT1G76250.1  CDS  gene_syn T23E18.18, T23E18_18  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 29 Blast hits to 29 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G76250.1p  transcript_id AT1G76250.1  protein_id AT1G76250.1p  transcript_id AT1G76250.1  
At1g76260	chr1:028610363	0.0	W/28610363-28610407,28610487-28610570,28610641-28610773,28610922-28611033,28611170-28611269,28611385-28611512,28611679-28611748,28612007-28612095,28612235-28612280,28612453-28612523,28612603-28612676,28612759-28612817,28612957-28612998	AT1G76260.1  CDS  gene_syn T23E18.19, T23E18_19  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT1G20540.1); Has 6019 Blast hits to 5071 proteins in 297 species: Archae - 0; Bacteria - 587; Metazoa - 3079; Fungi - 1085; Plants - 660; Viruses - 0; Other Eukaryotes - 608 (source: NCBI BLink).  protein_id AT1G76260.1p  transcript_id AT1G76260.1  protein_id AT1G76260.1p  transcript_id AT1G76260.1  
At1g76270	chr1:028616334	0.0	C/28616334-28616537,28616165-28616255,28615958-28616034,28615765-28615853,28615500-28615683,28615019-28615200,28614567-28614669,28614137-28614468,28613554-28614010	AT1G76270.1  CDS  gene_syn F15M4.23, F15M4_23  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20550.1); Has 436 Blast hits to 433 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 434; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G76270.1p  transcript_id AT1G76270.1  protein_id AT1G76270.1p  transcript_id AT1G76270.1  
At1g76280	chr1:028622568	0.0	C/28622568-28622581,28622409-28622475,28622259-28622328,28621955-28622142,28621673-28621780,28621403-28621585,28620706-28621149,28619987-28620160,28619377-28619604,28619051-28619194,28618775-28618963,28618422-28618541,28617948-28618340	AT1G76280.1  CDS  gene_syn F15M4.22  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G31400.1); Has 6575 Blast hits to 2439 proteins in 82 species: Archae - 2; Bacteria - 0; Metazoa - 26; Fungi - 21; Plants - 6321; Viruses - 0; Other Eukaryotes - 205 (source: NCBI BLink).  protein_id AT1G76280.1p  transcript_id AT1G76280.1  protein_id AT1G76280.1p  transcript_id AT1G76280.1  
At1g76280	chr1:028622568	0.0	C/28622568-28622581,28622409-28622475,28622259-28622328,28621955-28622142,28621673-28621780,28621403-28621585,28620706-28621149,28620268-28620363,28619987-28620160,28619377-28619604,28619051-28619194,28618775-28618963,28618365-28618541	AT1G76280.2  CDS  gene_syn F15M4.22  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G18940.1); Has 5016 Blast hits to 2078 proteins in 65 species: Archae - 2; Bacteria - 0; Metazoa - 13; Fungi - 14; Plants - 4839; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink).  protein_id AT1G76280.2p  transcript_id AT1G76280.2  protein_id AT1G76280.2p  transcript_id AT1G76280.2  
At1g76290	chr1:028625211	0.0	C/28625211-28625408,28624424-28625140,28623891-28624246,28623443-28623812	AT1G76290.1  CDS  gene_syn F15M4.21, F15M4_21  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  product AMP-dependent synthetase and ligase family protein  note AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AAE1 (ACYL ACTIVATING ENZYME 1); AMP binding (TAIR:AT1G20560.1); Has 43363 Blast hits to 42095 proteins in 2052 species: Archae - 572; Bacteria - 21710; Metazoa - 2538; Fungi - 1482; Plants - 1017; Viruses - 1; Other Eukaryotes - 16043 (source: NCBI BLink).  protein_id AT1G76290.1p  transcript_id AT1G76290.1  protein_id AT1G76290.1p  transcript_id AT1G76290.1  
At1g76300	chr1:028625957	0.0	W/28625957-28626115,28626535-28626587,28626708-28626768,28626862-28626918,28627024-28627080	AT1G76300.1  CDS  gene_syn F15M4.20, SmD3, snRNP core protein SmD3  gene SmD3  go_component nucleolus|GO:0005730|15496452|IDA  go_component nucleus|GO:0005634|15496452|IDA  go_component nucleus|GO:0005634||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_component nuclear body|GO:0016604|16839879|IDA  go_function molecular_function|GO:0003674||ND  product SmD3 (snRNP core protein SmD3)  note snRNP core protein SmD3 (SmD3); FUNCTIONS IN: molecular_function unknown; LOCATED IN: nuclear body, nucleolus, small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative (TAIR:AT1G20580.1); Has 890 Blast hits to 890 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 384; Fungi - 227; Plants - 127; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).  protein_id AT1G76300.1p  transcript_id AT1G76300.1  protein_id AT1G76300.1p  transcript_id AT1G76300.1  
At1g76310	chr1:028630142	0.0	C/28630142-28630199,28629929-28630052,28629780-28629839,28629654-28629702,28629432-28629563,28629205-28629348,28629037-28629126,28628717-28628941,28628534-28628632,28628273-28628451,28628046-28628181	AT1G76310.1  CDS  gene_syn CYCB2;4, CYCLIN B2;4, F15M4.19  gene CYCB2;4  function core cell cycle genes  go_component nucleus|GO:0005634||IEA  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase regulator activity|GO:0016538||ISS  product CYCB2;4 (CYCLIN B2;4); cyclin-dependent protein kinase regulator  note CYCLIN B2;4 (CYCB2;4); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCB2;3 (Cyclin B2;3); cyclin-dependent protein kinase regulator (TAIR:AT1G20610.1); Has 3331 Blast hits to 3323 proteins in 295 species: Archae - 0; Bacteria - 0; Metazoa - 1738; Fungi - 366; Plants - 734; Viruses - 30; Other Eukaryotes - 463 (source: NCBI BLink).  protein_id AT1G76310.1p  transcript_id AT1G76310.1  protein_id AT1G76310.1p  transcript_id AT1G76310.1  
At1g76320	chr1:028631404	0.0	W/28631404-28633401,28633586-28633642,28633749-28633886	AT1G76320.2  CDS  gene_syn F15M4.18, FAR1-related sequence 4, FRS4  gene FRS4  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process response to red or far red light|GO:0009639||ISS  product FRS4 (FAR1-related sequence 4); zinc ion binding  note FAR1-related sequence 4 (FRS4); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FAR1 (FAR-RED IMPAIRED RESPONSE 1); transcription activator/ transcription factor (TAIR:AT4G15090.1); Has 879 Blast hits to 796 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 78; Plants - 800; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G76320.2p  transcript_id AT1G76320.2  protein_id AT1G76320.2p  transcript_id AT1G76320.2  
At1g76320	chr1:028631404	0.0	W/28631404-28633407,28633586-28633642,28633749-28633886	AT1G76320.1  CDS  gene_syn F15M4.18, FAR1-related sequence 4, FRS4  gene FRS4  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process response to red or far red light|GO:0009639||ISS  product FRS4 (FAR1-related sequence 4); zinc ion binding  note FAR1-related sequence 4 (FRS4); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FAR1 (FAR-RED IMPAIRED RESPONSE 1); transcription activator/ transcription factor (TAIR:AT4G15090.1); Has 879 Blast hits to 796 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 78; Plants - 800; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G76320.1p  transcript_id AT1G76320.1  protein_id AT1G76320.1p  transcript_id AT1G76320.1  
At1g76330	chr1:028634692	0.0	W/28634692-28634773	AT1G76330.1  tRNA  gene_syn 51718.TRNA-SER-1, 60052.TRNA-SER-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: TGA)  transcript_id AT1G76330.1  
At1g76340	chr1:028635188	0.0	C/28635188-28636306	AT1G76340.1  CDS  gene_syn F15M4.16, F15M4_16  go_component membrane|GO:0016020||ISS  product integral membrane family protein  note integral membrane family protein; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT5G19980.1); Has 909 Blast hits to 904 proteins in 168 species: Archae - 0; Bacteria - 2; Metazoa - 270; Fungi - 169; Plants - 384; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT1G76340.1p  transcript_id AT1G76340.1  protein_id AT1G76340.1p  transcript_id AT1G76340.1  
At1g76350	chr1:028640143	0.0	W/28640143-28640937,28641024-28641071,28641154-28642024,28642105-28642817	AT1G76350.1  CDS  gene_syn F15M4.15, F15M4_15  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product RWP-RK domain-containing protein  note RWP-RK domain-containing protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: RWP-RK domain-containing protein (TAIR:AT1G20640.2); Has 347 Blast hits to 279 proteins in 26 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 331; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G76350.1p  transcript_id AT1G76350.1  protein_id AT1G76350.1p  transcript_id AT1G76350.1  
At1g76360	chr1:028646411	0.0	C/28646411-28646483,28645547-28646118,28644213-28644348,28643985-28644121,28643749-28643872,28643242-28643654	AT1G76360.1  CDS  gene_syn F15M4.14, F15M4_14  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT2G17220.2); Has 84026 Blast hits to 82360 proteins in 2431 species: Archae - 44; Bacteria - 7752; Metazoa - 36230; Fungi - 6525; Plants - 18939; Viruses - 382; Other Eukaryotes - 14154 (source: NCBI BLink).  protein_id AT1G76360.1p  transcript_id AT1G76360.1  protein_id AT1G76360.1p  transcript_id AT1G76360.1  
At1g76370	chr1:028650152	0.0	C/28650152-28650239,28650012-28650062,28649774-28649928,28649500-28649689,28649025-28649416,28648660-28648929	AT1G76370.1  CDS  gene_syn F15M4.13, F15M4_13  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast envelope; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATP binding / protein kinase/ protein serine/threonine kinase (TAIR:AT1G20650.1); Has 84203 Blast hits to 83129 proteins in 3009 species: Archae - 40; Bacteria - 7422; Metazoa - 37385; Fungi - 6562; Plants - 18610; Viruses - 379; Other Eukaryotes - 13805 (source: NCBI BLink).  protein_id AT1G76370.1p  transcript_id AT1G76370.1  protein_id AT1G76370.1p  transcript_id AT1G76370.1  
At1g76380	chr1:028654174	0.0	C/28654174-28654536,28653569-28653608,28653384-28653453,28653245-28653290,28653054-28653156,28652722-28652786,28652281-28652638,28652056-28652198,28651416-28651967	AT1G76380.3  CDS  gene_syn F15M4.12, F15M4_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product DNA-binding bromodomain-containing protein  note DNA-binding bromodomain-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain, conserved site (InterPro:IPR018359), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT1G20670.1); Has 5118 Blast hits to 4239 proteins in 189 species: Archae - 0; Bacteria - 4; Metazoa - 3364; Fungi - 749; Plants - 335; Viruses - 2; Other Eukaryotes - 664 (source: NCBI BLink).  protein_id AT1G76380.3p  transcript_id AT1G76380.3  protein_id AT1G76380.3p  transcript_id AT1G76380.3  
At1g76380	chr1:028654174	0.0	C/28654174-28654536,28653569-28653608,28653384-28653453,28653245-28653290,28653058-28653156,28652722-28652790,28652281-28652638,28652056-28652198,28651416-28651967	AT1G76380.1  CDS  gene_syn F15M4.12, F15M4_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product DNA-binding bromodomain-containing protein  note DNA-binding bromodomain-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain, conserved site (InterPro:IPR018359), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT1G20670.1); Has 5390 Blast hits to 4360 proteins in 191 species: Archae - 0; Bacteria - 4; Metazoa - 3563; Fungi - 790; Plants - 340; Viruses - 2; Other Eukaryotes - 691 (source: NCBI BLink).  protein_id AT1G76380.1p  transcript_id AT1G76380.1  protein_id AT1G76380.1p  transcript_id AT1G76380.1  
At1g76380	chr1:028654174	0.0	C/28654174-28654536,28653569-28653608,28653384-28653456,28653245-28653290,28653058-28653156,28652722-28652790,28652281-28652638,28652056-28652198,28651416-28651967	AT1G76380.2  CDS  gene_syn F15M4.12, F15M4_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product DNA-binding bromodomain-containing protein  note DNA-binding bromodomain-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain, conserved site (InterPro:IPR018359), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT1G20670.1); Has 5395 Blast hits to 4364 proteins in 190 species: Archae - 0; Bacteria - 2; Metazoa - 3581; Fungi - 791; Plants - 338; Viruses - 2; Other Eukaryotes - 681 (source: NCBI BLink).  protein_id AT1G76380.2p  transcript_id AT1G76380.2  protein_id AT1G76380.2p  transcript_id AT1G76380.2  
At1g76390	chr1:028655914	0.0	W/28655914-28656456,28656536-28656845,28656949-28658531	AT1G76390.1  CDS  gene_syn F15M4.11, F15M4_11  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  product armadillo/beta-catenin repeat family protein / U-box domain-containing protein  note armadillo/beta-catenin repeat family protein / U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: SAUL1 (SENESCENCE-ASSOCIATED E3 UBIQUITIN LIGASE 1); ubiquitin-protein ligase (TAIR:AT1G20780.1); Has 1744 Blast hits to 1602 proteins in 148 species: Archae - 0; Bacteria - 24; Metazoa - 285; Fungi - 205; Plants - 1070; Viruses - 3; Other Eukaryotes - 157 (source: NCBI BLink).  protein_id AT1G76390.1p  transcript_id AT1G76390.1  protein_id AT1G76390.1p  transcript_id AT1G76390.1  
At1g76390	chr1:028655914	0.0	W/28655914-28656456,28656536-28656845,28656949-28658531	AT1G76390.2  CDS  gene_syn F15M4.11, F15M4_11  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  product armadillo/beta-catenin repeat family protein / U-box domain-containing protein  note armadillo/beta-catenin repeat family protein / U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: SAUL1 (SENESCENCE-ASSOCIATED E3 UBIQUITIN LIGASE 1); ubiquitin-protein ligase (TAIR:AT1G20780.1); Has 1744 Blast hits to 1602 proteins in 148 species: Archae - 0; Bacteria - 24; Metazoa - 285; Fungi - 205; Plants - 1070; Viruses - 3; Other Eukaryotes - 157 (source: NCBI BLink).  protein_id AT1G76390.2p  transcript_id AT1G76390.2  protein_id AT1G76390.2p  transcript_id AT1G76390.2  
At1g76400	chr1:028661568	0.0	C/28661568-28661672,28661285-28661329,28660568-28661202,28660328-28660475,28660068-28660244,28659775-28659843,28659555-28659644,28659309-28659467,28658986-28659210,28658713-28658904	AT1G76400.1  CDS  gene_syn F15M4.10, F15M4_10  go_component membrane|GO:0016020|17432890|IDA  go_process protein amino acid glycosylation|GO:0006486||IEA  go_function dolichyl-diphosphooligosaccharide-protein glycotransferase activity|GO:0004579||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_function oligosaccharyl transferase activity|GO:0004576||ISS  product ribophorin I family protein  note ribophorin I family protein; FUNCTIONS IN: oligosaccharyl transferase activity, dolichyl-diphosphooligosaccharide-protein glycotransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribophorin I (InterPro:IPR007676); BEST Arabidopsis thaliana protein match is: ribophorin I family protein (TAIR:AT2G01720.1); Has 295 Blast hits to 295 proteins in 135 species: Archae - 2; Bacteria - 0; Metazoa - 127; Fungi - 87; Plants - 33; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT1G76400.1p  transcript_id AT1G76400.1  protein_id AT1G76400.1p  transcript_id AT1G76400.1  
At1g76405	chr1:028661994	0.0	W/28661994-28662086,28662787-28662861,28662958-28663110,28663210-28663308,28663590-28663673	AT1G76405.2  CDS  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12177442|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20816.1); Has 28 Blast hits to 27 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G76405.2p  transcript_id AT1G76405.2  protein_id AT1G76405.2p  transcript_id AT1G76405.2  
At1g76405	chr1:028661994	0.0	W/28661994-28662086,28662787-28662861,28662968-28662979	AT1G76405.1  CDS  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12177442|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20816.1); Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G76405.1p  transcript_id AT1G76405.1  protein_id AT1G76405.1p  transcript_id AT1G76405.1  
At1g76410	chr1:028668915	0.0	W/28668915-28669472	AT1G76410.1  CDS  gene_syn ATL8, F15M4.9  gene ATL8  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product ATL8; protein binding / zinc ion binding  note ATL8; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G20823.1); Has 6035 Blast hits to 6015 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 2014; Fungi - 431; Plants - 2684; Viruses - 26; Other Eukaryotes - 880 (source: NCBI BLink).  protein_id AT1G76410.1p  transcript_id AT1G76410.1  protein_id AT1G76410.1p  transcript_id AT1G76410.1  
At1g76420	chr1:028673631	0.0	C/28673631-28673835,28673224-28673498,28672029-28672553	AT1G76420.1  CDS  gene_syn ANAC031, ARABIDOPSIS NAC 031, CUC3, CUP SHAPED COTYLEDON3, F15M4.8, NAC368  gene CUC3  function Identified in an enhancer trap line; member of the NAC family of proteins. Expressed at the boundary between the shoot meristem and lateral organs and the polar nuclei in the embryo sac.  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_process meristem initiation|GO:0010014|12837947|TAS  go_process meristem initiation|GO:0010014|17122068|IGI  go_process organ boundary specification between lateral organs and the meristem|GO:0010199|12837947|IGI  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837947|ISS  product CUC3 (CUP SHAPED COTYLEDON3); transcription factor  note CUP SHAPED COTYLEDON3 (CUC3); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, meristem initiation, organ boundary specification between lateral organs and the meristem; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC038 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 38); transcription factor (TAIR:AT2G24430.2); Has 1635 Blast hits to 1633 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1631; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G76420.1p  transcript_id AT1G76420.1  protein_id AT1G76420.1p  transcript_id AT1G76420.1  
At1g76430	chr1:028681165	0.0	C/28681165-28681874,28679115-28680003	AT1G76430.1  CDS  gene_syn F15M4.7  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function phosphate transmembrane transporter activity|GO:0015114||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product phosphate transporter family protein  note phosphate transporter family protein; FUNCTIONS IN: phosphate transmembrane transporter activity, carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: phosphate transporter family protein (TAIR:AT1G20860.1); Has 19656 Blast hits to 19588 proteins in 1299 species: Archae - 338; Bacteria - 12582; Metazoa - 1996; Fungi - 2895; Plants - 1005; Viruses - 0; Other Eukaryotes - 840 (source: NCBI BLink).  protein_id AT1G76430.1p  transcript_id AT1G76430.1  protein_id AT1G76430.1p  transcript_id AT1G76430.1  
At1g76440	chr1:028682822	0.0	C/28682822-28682999,28682371-28682624	AT1G76440.1  CDS  gene_syn F15M4.6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20870.1); Has 32 Blast hits to 32 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G76440.1p  transcript_id AT1G76440.1  protein_id AT1G76440.1p  transcript_id AT1G76440.1  
At1g76440	chr1:028682822	0.0	C/28682822-28682999,28682371-28682624	AT1G76440.2  CDS  gene_syn F15M4.6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20870.1); Has 32 Blast hits to 32 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G76440.2p  transcript_id AT1G76440.2  protein_id AT1G76440.2p  transcript_id AT1G76440.2  
At1g76440	chr1:028682822	0.0	C/28682822-28682999,28682371-28682624	AT1G76440.3  CDS  gene_syn F15M4.6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20870.1); Has 32 Blast hits to 32 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G76440.3p  transcript_id AT1G76440.3  protein_id AT1G76440.3p  transcript_id AT1G76440.3  
At1g76450	chr1:028684618	0.0	W/28684618-28684684,28684771-28684846,28684925-28685028,28685105-28685170,28685261-28685341,28685437-28685519,28685609-28685684,28685762-28685880,28685962-28686006,28686083-28686109	AT1G76450.1  CDS  gene_syn F15M4.5  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  product oxygen-evolving complex-related  note oxygen-evolving complex-related; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124); Has 30 Blast hits to 30 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G76450.1p  transcript_id AT1G76450.1  protein_id AT1G76450.1p  transcript_id AT1G76450.1  
At1g76460	chr1:028688300	0.0	C/28688300-28688506,28687932-28688076,28687706-28687832,28687577-28687619,28687246-28687483,28687042-28687129,28686932-28686941	AT1G76460.1  CDS  gene_syn F15M4.25  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT1G20880.1); Has 12227 Blast hits to 10039 proteins in 514 species: Archae - 2; Bacteria - 570; Metazoa - 7119; Fungi - 1220; Plants - 2245; Viruses - 0; Other Eukaryotes - 1071 (source: NCBI BLink).  protein_id AT1G76460.1p  transcript_id AT1G76460.1  protein_id AT1G76460.1p  transcript_id AT1G76460.1  
At1g76470	chr1:028691291	0.0	C/28691291-28691405,28691015-28691184,28690760-28690945,28690471-28690642,28690176-28690365,28689955-28690099	AT1G76470.1  CDS  gene_syn F14G6.7, F14G6_7  go_component endomembrane system|GO:0012505||IEA  go_process steroid biosynthetic process|GO:0006694||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function 3-beta-hydroxy-delta5-steroid dehydrogenase activity|GO:0003854||IEA  go_function binding|GO:0005488||IEA  go_process lignin biosynthetic process|GO:0009809||ISS  go_function cinnamoyl-CoA reductase activity|GO:0016621||ISS  product 3-beta-hydroxy-delta5-steroid dehydrogenase/ binding / catalytic/ cinnamoyl-CoA reductase  note 3-beta-hydroxy-delta5-steroid dehydrogenase/ binding / catalytic/ cinnamoyl-CoA reductase; FUNCTIONS IN: 3-beta-hydroxy-delta5-steroid dehydrogenase activity, binding, cinnamoyl-CoA reductase activity, catalytic activity; INVOLVED IN: lignin biosynthetic process, steroid biosynthetic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, male gametophyte, sepal, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: 3-beta hydroxysteroid dehydrogenase/isomerase (InterPro:IPR002225), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamoyl-CoA reductase family (TAIR:AT2G33590.1); Has 7582 Blast hits to 7568 proteins in 1087 species: Archae - 108; Bacteria - 2416; Metazoa - 372; Fungi - 521; Plants - 1401; Viruses - 51; Other Eukaryotes - 2713 (source: NCBI BLink).  protein_id AT1G76470.1p  transcript_id AT1G76470.1  protein_id AT1G76470.1p  transcript_id AT1G76470.1  
At1g76480	chr1:028693366	0.0	C/28693366-28693403,28693070-28693195,28692863-28692956,28692600-28692731,28692442-28692532,28692193-28692362	AT1G76480.1  CDS  gene_syn F15M4.2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20890.1); Has 21 Blast hits to 21 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G76480.1p  transcript_id AT1G76480.1  protein_id AT1G76480.1p  transcript_id AT1G76480.1  
At1g76490	chr1:028695801	0.0	W/28695801-28696939,28697165-28697346,28697508-28697854,28697946-28698206	AT1G76490.1  CDS  gene_syn 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE, 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, F15M4.1, HMG-COA REDUCTASE, HMG1, HMGR1, HYDROXY METHYLGLUTARYL COA REDUCTASE 1  gene HMG1  function Encodes a 3-hydroxy-3-methylglutaryl coenzyme A reductase, which is involved in melavonate biosynthesis and performs the first committed step in isoprenoid biosynthesis. Expression is activated in dark in leaf tissue but not controlled by light in the root (confine  go_component peroxisome|GO:0005777|15618432|IDA  go_component endoplasmic reticulum|GO:0005783|8302869|IDA  go_component plastid|GO:0009536|15618432|IDA  go_component membrane|GO:0016020|2491679|TAS  go_process isoprenoid biosynthetic process|GO:0008299|2491679|TAS  go_process isoprenoid biosynthetic process|GO:0008299|8302869|ISS  go_process triterpenoid biosynthetic process|GO:0016104|17917299|IMP  go_process sterol biosynthetic process|GO:0016126|14871314|IMP  go_function hydroxymethylglutaryl-CoA reductase activity|GO:0042282|2649893|IGI  go_function hydroxymethylglutaryl-CoA reductase activity|GO:0042282|2649893|ISS  product HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1); hydroxymethylglutaryl-CoA reductase  note HYDROXY METHYLGLUTARYL COA REDUCTASE 1 (HMG1); FUNCTIONS IN: hydroxymethylglutaryl-CoA reductase activity; INVOLVED IN: triterpenoid biosynthetic process, isoprenoid biosynthetic process, sterol biosynthetic process; LOCATED IN: endoplasmic reticulum, peroxisome, plastid, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Hydroxymethylglutaryl-CoA reductase, class I, catalytic (InterPro:IPR004554), Hydroxymethylglutaryl-CoA reductase, class I/II, substrate-binding (InterPro:IPR009029), Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding (InterPro:IPR009023), Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic (InterPro:IPR002202); BEST Arabidopsis thaliana protein match is: HMG2 (3-HYDROXY-3-METHYLGLUTARYL-COA REDUCTASE 2); hydroxymethylglutaryl-CoA reductase (TAIR:AT2G17370.1); Has 1421 Blast hits to 1421 proteins in 550 species: Archae - 128; Bacteria - 468; Metazoa - 201; Fungi - 155; Plants - 212; Viruses - 1; Other Eukaryotes - 256 (source: NCBI BLink).  protein_id AT1G76490.1p  transcript_id AT1G76490.1  protein_id AT1G76490.1p  transcript_id AT1G76490.1  
At1g76500	chr1:028705532	0.0	W/28705532-28706440	AT1G76500.1  CDS  gene_syn AHL29, AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 29, F14G6.10, F14G6_10, SOB3, SUPPRESSOR OF PHYB-4 3  gene SOB3  function Encodes an AT hook domain containing protein. Identified in a screen of activation tagged lines that suppress the long-hypocotyl phenotype of a weak phyB allele. Affects cell elongation in the hypocotyl and leaves.Acts redundantly with ESC to modulate hypocotyl growth inhibition in response to light  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process photomorphogenesis|GO:0009640|18088311|IMP  go_function DNA binding|GO:0003677||ISS  product SOB3 (SUPPRESSOR OF PHYB-4 3); DNA binding  note SUPPRESSOR OF PHYB-4 3 (SOB3); FUNCTIONS IN: DNA binding; INVOLVED IN: photomorphogenesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding, conserved site (InterPro:IPR017956), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: ESC (ESCAROLA); double-stranded DNA binding (TAIR:AT1G20900.1); Has 1746 Blast hits to 1286 proteins in 166 species: Archae - 0; Bacteria - 449; Metazoa - 288; Fungi - 106; Plants - 492; Viruses - 16; Other Eukaryotes - 395 (source: NCBI BLink).  protein_id AT1G76500.1p  transcript_id AT1G76500.1  protein_id AT1G76500.1p  transcript_id AT1G76500.1  
At1g76510	chr1:028712103	0.0	C/28712103-28712498,28711832-28711965,28711690-28711729,28711260-28711312,28711134-28711179,28710761-28710853,28710274-28710396,28710138-28710186,28709990-28710053,28709650-28709716,28709414-28709464,28709106-28709198,28708927-28709022	AT1G76510.1  CDS  gene_syn F14G6.11, F14G6_11  go_component intracellular|GO:0005622||IEA  go_component intracellular|GO:0005622||ISS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ARID/BRIGHT DNA-binding domain-containing protein  note ARID/BRIGHT DNA-binding domain-containing protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978), AT-rich interaction region (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: ARID/BRIGHT DNA-binding domain-containing protein (TAIR:AT1G20910.1); Has 382 Blast hits to 382 proteins in 67 species: Archae - 0; Bacteria - 2; Metazoa - 269; Fungi - 30; Plants - 65; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G76510.1p  transcript_id AT1G76510.1  protein_id AT1G76510.1p  transcript_id AT1G76510.1  
At1g76510	chr1:028712103	0.0	C/28712103-28712498,28711832-28711965,28711690-28711729,28711260-28711312,28711134-28711179,28710761-28710853,28710274-28710396,28710138-28710186,28709990-28710053,28709650-28709716,28709414-28709464,28709106-28709198,28708927-28709022	AT1G76510.2  CDS  gene_syn F14G6.11, F14G6_11  go_component intracellular|GO:0005622||IEA  go_component intracellular|GO:0005622||ISS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ARID/BRIGHT DNA-binding domain-containing protein  note ARID/BRIGHT DNA-binding domain-containing protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978), AT-rich interaction region (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: ARID/BRIGHT DNA-binding domain-containing protein (TAIR:AT1G20910.1); Has 382 Blast hits to 382 proteins in 67 species: Archae - 0; Bacteria - 2; Metazoa - 269; Fungi - 30; Plants - 65; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G76510.2p  transcript_id AT1G76510.2  protein_id AT1G76510.2p  transcript_id AT1G76510.2  
At1g76520	chr1:028715384	0.0	W/28715384-28715521,28715629-28715708,28715783-28715907,28715998-28716119,28716210-28716359,28716433-28716525,28716619-28716719,28716840-28717078,28717165-28717289	AT1G76520.1  CDS  gene_syn F14G6.12, F14G6_12  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process auxin polar transport|GO:0009926||ISS  go_function auxin:hydrogen symporter activity|GO:0009672||ISS  product auxin efflux carrier family protein  note auxin efflux carrier family protein; FUNCTIONS IN: auxin:hydrogen symporter activity; INVOLVED IN: auxin polar transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: auxin efflux carrier family protein (TAIR:AT1G76530.1); Has 405 Blast hits to 391 proteins in 88 species: Archae - 0; Bacteria - 23; Metazoa - 0; Fungi - 160; Plants - 181; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT1G76520.1p  transcript_id AT1G76520.1  protein_id AT1G76520.1p  transcript_id AT1G76520.1  
At1g76520	chr1:028715384	0.0	W/28715384-28715521,28715629-28715708,28715783-28715907,28715998-28716119,28716210-28716359,28716433-28716525,28716619-28716719,28716840-28717078,28717165-28717289	AT1G76520.2  CDS  gene_syn F14G6.12, F14G6_12  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process auxin polar transport|GO:0009926||ISS  go_function auxin:hydrogen symporter activity|GO:0009672||ISS  product auxin efflux carrier family protein  note auxin efflux carrier family protein; FUNCTIONS IN: auxin:hydrogen symporter activity; INVOLVED IN: auxin polar transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: auxin efflux carrier family protein (TAIR:AT1G76530.1); Has 405 Blast hits to 391 proteins in 88 species: Archae - 0; Bacteria - 23; Metazoa - 0; Fungi - 160; Plants - 181; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT1G76520.2p  transcript_id AT1G76520.2  protein_id AT1G76520.2p  transcript_id AT1G76520.2  
At1g76530	chr1:028718407	0.0	W/28718407-28718541,28718617-28718696,28718769-28718893,28718987-28719108,28719140-28719352,28719430-28719522,28719614-28719714,28719815-28720068,28720150-28720274	AT1G76530.1  CDS  gene_syn F14G6.13, F14G6_13  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process auxin polar transport|GO:0009926||ISS  go_function auxin:hydrogen symporter activity|GO:0009672||ISS  product auxin efflux carrier family protein  note auxin efflux carrier family protein; FUNCTIONS IN: auxin:hydrogen symporter activity; INVOLVED IN: auxin polar transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: auxin efflux carrier family protein (TAIR:AT1G76520.2); Has 344 Blast hits to 332 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 128; Plants - 179; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT1G76530.1p  transcript_id AT1G76530.1  protein_id AT1G76530.1p  transcript_id AT1G76530.1  
At1g76540	chr1:028722125	0.0	C/28722125-28722351,28721689-28721830,28721536-28721597,28721311-28721422,28721126-28721219,28720956-28721025,28720729-28720867,28720554-28720649	AT1G76540.1  CDS  gene_syn CDKB2;1, CYCLIN-DEPENDENT KINASE B2;1, F14G6.14, F14G6_14, cyclin-dependent kinase B2;1  gene CDKB2;1  function Encodes a cyclin-dependent protein kinase involved in regulation of the G2/M transition of the mitotic cell cycle. Specifically binds to the cyclin CYCD4;1, expressed in shoot meristem, young leaves and vascular tissue during the G2/M phase. Required for proper organization of the shoot apical meristem and for hormone signaling.  go_component cyclin-dependent protein kinase holoenzyme complex|GO:0000307|12857813|IDA  go_process G2/M transition of mitotic cell cycle|GO:0000086|12857813|TAS  go_process hormone-mediated signaling|GO:0009755|18223038|IEP  go_process hormone-mediated signaling|GO:0009755|18223038|IMP  go_process regulation of meristem organization|GO:0009934|18223038|IMP  go_process regulation of G2/M transition of mitotic cell cycle|GO:0010389|18223038|IMP  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_process histone phosphorylation|GO:0016572|12857813|IDA  go_function cyclin-dependent protein kinase activity|GO:0004693|12857813|IDA  go_function protein binding|GO:0005515|12857813|IPI  go_function kinase activity|GO:0016301||ISS  product CDKB2;1 (cyclin-dependent kinase B2;1); cyclin-dependent protein kinase/ kinase/ protein binding  note cyclin-dependent kinase B2;1 (CDKB2;1); FUNCTIONS IN: protein binding, kinase activity, cyclin-dependent protein kinase activity; INVOLVED IN: in 6 processes; LOCATED IN: cyclin-dependent protein kinase holoenzyme complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CDKB2;2 (CYCLIN-DEPENDENT KINASE B2;2); cyclin-dependent protein kinase/ kinase (TAIR:AT1G20930.1); Has 82394 Blast hits to 81121 proteins in 1853 species: Archae - 46; Bacteria - 6621; Metazoa - 36015; Fungi - 8069; Plants - 14933; Viruses - 409; Other Eukaryotes - 16301 (source: NCBI BLink).  protein_id AT1G76540.1p  transcript_id AT1G76540.1  protein_id AT1G76540.1p  transcript_id AT1G76540.1  
At1g76550	chr1:028726840	0.0	C/28726840-28726929,28726215-28726387,28726013-28726125,28725801-28725875,28725599-28725712,28725411-28725478,28725209-28725292,28725015-28725068,28724748-28724828,28724565-28724658,28724400-28724473,28724178-28724288,28724039-28724083,28723905-28723961,28723690-28723794,28723493-28723609,28723278-28723381,28722900-28723194	AT1G76550.1  CDS  gene_syn F14G6.15, F14G6_15  go_process glycolysis|GO:0006096||IEA  go_component pyrophosphate-dependent phosphofructokinase complex, alpha-subunit complex|GO:0010317||ISS  go_process glycolysis|GO:0006096||ISS  go_function diphosphate-fructose-6-phosphate 1-phosphotransferase activity|GO:0047334||ISS  product pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative  note pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative; FUNCTIONS IN: diphosphate-fructose-6-phosphate 1-phosphotransferase activity; INVOLVED IN: glycolysis; LOCATED IN: pyrophosphate-dependent phosphofructokinase complex, alpha-subunit complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase PfpB (InterPro:IPR011183), Phosphofructokinase (InterPro:IPR000023); BEST Arabidopsis thaliana protein match is: pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related (TAIR:AT1G20950.1); Has 2719 Blast hits to 2653 proteins in 853 species: Archae - 15; Bacteria - 1820; Metazoa - 8; Fungi - 4; Plants - 258; Viruses - 0; Other Eukaryotes - 614 (source: NCBI BLink).  protein_id AT1G76550.1p  transcript_id AT1G76550.1  protein_id AT1G76550.1p  transcript_id AT1G76550.1  
At1g76560	chr1:028728285	0.0	W/28728285-28728689	AT1G76560.1  CDS  gene_syn CP12-3, F14G6.16, F14G6_16  gene CP12-3  go_component chloroplast|GO:0009507|15028209|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product CP12-3  note CP12-3; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function CP12 (InterPro:IPR003823); BEST Arabidopsis thaliana protein match is: CP12-1 (TAIR:AT2G47400.1); Has 178 Blast hits to 178 proteins in 51 species: Archae - 0; Bacteria - 92; Metazoa - 0; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G76560.1p  transcript_id AT1G76560.1  protein_id AT1G76560.1p  transcript_id AT1G76560.1  
At1g76570	chr1:028729132	0.0	W/28729132-28729275,28729359-28729525,28729694-28729840,28730049-28730181,28730288-28730380,28730455-28730754	AT1G76570.1  CDS  gene_syn F14G6.17, F14G6_17  go_component chloroplast|GO:0009507||IEA  go_component membrane|GO:0016020||IEA  go_component light-harvesting complex|GO:0030076||ISS  go_process response to blue light|GO:0009637|18820083|IEP  go_process response to far red light|GO:0010218|18820083|IEP  go_process photosynthesis|GO:0015979||ISS  go_function chlorophyll binding|GO:0016168||ISS  product chlorophyll A-B binding family protein  note chlorophyll A-B binding family protein; FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to far red light, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast, membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: LHCB2.3; chlorophyll binding (TAIR:AT3G27690.1); Has 1746 Blast hits to 1686 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1525; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).  protein_id AT1G76570.1p  transcript_id AT1G76570.1  protein_id AT1G76570.1p  transcript_id AT1G76570.1  
At1g76580	chr1:028734600	0.0	W/28734600-28734608,28734705-28735078,28735174-28735370,28735461-28736281,28736370-28736444,28736537-28736644,28736734-28736845,28736933-28737068,28737149-28737293,28737386-28737967,28738044-28738451	AT1G76580.1  CDS  gene_syn F14G6.18, F14G6_18  go_component plasma membrane|GO:0005886|17317660|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: SPL14 (squamosa promoter binding protein-like 14); DNA binding / transcription activator/ transcription factor (TAIR:AT1G20980.1); Has 3182 Blast hits to 365 proteins in 89 species: Archae - 0; Bacteria - 29; Metazoa - 228; Fungi - 100; Plants - 98; Viruses - 0; Other Eukaryotes - 2727 (source: NCBI BLink).  protein_id AT1G76580.1p  transcript_id AT1G76580.1  protein_id AT1G76580.1p  transcript_id AT1G76580.1  
At1g76590	chr1:028740875	0.0	W/28740875-28740877,28740972-28741181,28741268-28741483,28741586-28741894	AT1G76590.1  CDS  gene_syn F14G6.19, F14G6_19  go_process biological_process|GO:0008150||ND  go_function binding|GO:0005488||ISS  product zinc-binding family protein  note zinc-binding family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734); BEST Arabidopsis thaliana protein match is: zinc-binding family protein (TAIR:AT1G21000.1); Has 195 Blast hits to 195 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 193; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G76590.1p  transcript_id AT1G76590.1  protein_id AT1G76590.1p  transcript_id AT1G76590.1  
At1g76600	chr1:028746975	0.0	W/28746975-28747625	AT1G76600.1  CDS  gene_syn F14G6.20, F14G6_20  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleolus|GO:0005730|15610358|IDA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21010.1); Has 112 Blast hits to 112 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 112; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G76600.1p  transcript_id AT1G76600.1  protein_id AT1G76600.1p  transcript_id AT1G76600.1  
At1g76610	chr1:028751049	0.0	W/28751049-28751729	AT1G76610.1  CDS  gene_syn F14G6.21, F14G6_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF617, plant (InterPro:IPR006460); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21050.1); Has 134 Blast hits to 134 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G76610.1p  transcript_id AT1G76610.1  protein_id AT1G76610.1p  transcript_id AT1G76610.1  
At1g76620	chr1:028756787	0.0	W/28756787-28756884,28756971-28757043,28757139-28757201,28757288-28757542,28757621-28758021,28758095-28758194,28758276-28758329,28758420-28758512,28758602-28758730,28758814-28759131	AT1G76620.1  CDS  gene_syn F14G6.22, F14G6_22  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21060.1); Has 701 Blast hits to 500 proteins in 92 species: Archae - 0; Bacteria - 71; Metazoa - 190; Fungi - 76; Plants - 246; Viruses - 1; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT1G76620.1p  transcript_id AT1G76620.1  protein_id AT1G76620.1p  transcript_id AT1G76620.1  
At1g76630	chr1:028759699	0.0	W/28759699-28759767,28759868-28760191,28760278-28760361,28760469-28760519,28760628-28760729,28760797-28760937,28761030-28761110,28761187-28761431,28761510-28761681,28761823-28761935,28762015-28762072,28762306-28762518,28762643-28762694,28762811-28762906,28762991-28763184,28763284-28763378,28763471-28763713,28763925-28764786	AT1G76630.1  CDS  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product tetratricopeptide repeat (TPR)-containing protein  note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: SEC (secret agent); transferase, transferring glycosyl groups (TAIR:AT3G04240.1); Has 5924 Blast hits to 3836 proteins in 536 species: Archae - 384; Bacteria - 2298; Metazoa - 901; Fungi - 281; Plants - 131; Viruses - 0; Other Eukaryotes - 1929 (source: NCBI BLink).  protein_id AT1G76630.1p  transcript_id AT1G76630.1  protein_id AT1G76630.1p  transcript_id AT1G76630.1  
At1g76640	chr1:028765324	0.0	C/28765324-28765803	AT1G76640.1  CDS  gene_syn F28O16.1, F28O16_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509|17579812|IDA  go_function calcium ion binding|GO:0005509||ISS  product calmodulin-related protein, putative  note calmodulin-related protein, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, root, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT1G76650.1); Has 11555 Blast hits to 9313 proteins in 1065 species: Archae - 0; Bacteria - 30; Metazoa - 5252; Fungi - 2104; Plants - 2400; Viruses - 2; Other Eukaryotes - 1767 (source: NCBI BLink).  protein_id AT1G76640.1p  transcript_id AT1G76640.1  protein_id AT1G76640.1p  transcript_id AT1G76640.1  
At1g76650	chr1:028766909	0.0	C/28766909-28767442	AT1G76650.1  CDS  gene_syn CALMODULIN-LIKE 38, CML38, F28O16.2, F28O16_2  gene CML38  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to wounding|GO:0009611|17953483|IEP  go_function calcium ion binding|GO:0005509|17579812|IDA  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note CALMODULIN-LIKE 38 (CML38); FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to wounding; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin-related protein, putative (TAIR:AT1G76640.1); Has 11212 Blast hits to 8813 proteins in 1020 species: Archae - 0; Bacteria - 34; Metazoa - 5021; Fungi - 1984; Plants - 2417; Viruses - 0; Other Eukaryotes - 1756 (source: NCBI BLink).  protein_id AT1G76650.1p  transcript_id AT1G76650.1  protein_id AT1G76650.1p  transcript_id AT1G76650.1  
At1g76650	chr1:028767219	0.0	C/28767219-28767442,28766909-28767188	AT1G76650.2  CDS  gene_syn CALMODULIN-LIKE 38, CML38, F28O16.2, F28O16_2  gene CML38  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to wounding|GO:0009611|17953483|IEP  go_function calcium ion binding|GO:0005509|17579812|IDA  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note CALMODULIN-LIKE 38 (CML38); FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to wounding; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin-related protein, putative (TAIR:AT1G76640.1); Has 7314 Blast hits to 6979 proteins in 928 species: Archae - 0; Bacteria - 17; Metazoa - 3194; Fungi - 1016; Plants - 1899; Viruses - 0; Other Eukaryotes - 1188 (source: NCBI BLink).  protein_id AT1G76650.2p  transcript_id AT1G76650.2  protein_id AT1G76650.2p  transcript_id AT1G76650.2  
At1g76660	chr1:028771016	0.0	C/28771016-28771036,28769421-28770525,28769157-28769326	AT1G76660.1  CDS  gene_syn F28O16.3, F28O16_3  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G52430.1); Has 280 Blast hits to 160 proteins in 42 species: Archae - 0; Bacteria - 4; Metazoa - 55; Fungi - 17; Plants - 64; Viruses - 4; Other Eukaryotes - 136 (source: NCBI BLink).  protein_id AT1G76660.1p  transcript_id AT1G76660.1  protein_id AT1G76660.1p  transcript_id AT1G76660.1  
At1g76670	chr1:028774434	0.0	C/28774434-28774569,28774155-28774339,28773871-28774071,28773334-28773495,28772890-28773249	AT1G76670.1  CDS  gene_syn F28O16.4, F28O16_4  go_component membrane|GO:0016020||ISS  go_process response to nematode|GO:0009624|16478044|IEP  product transporter-related  note transporter-related; INVOLVED IN: response to nematode; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: transporter-related (TAIR:AT1G21070.1); Has 1259 Blast hits to 1249 proteins in 161 species: Archae - 0; Bacteria - 14; Metazoa - 296; Fungi - 205; Plants - 598; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).  protein_id AT1G76670.1p  transcript_id AT1G76670.1  protein_id AT1G76670.1p  transcript_id AT1G76670.1  
At1g76680	chr1:028776982	0.0	W/28776982-28777199,28777296-28777603,28777679-28778271	AT1G76680.1  CDS  gene_syn 12-OXOPHYTODIENOATE REDUCTASE 1, F28O16.5, F28O16_5, OPR1  gene OPR1  function Encodes a a member of an alpha/beta barrel fold family of FMN-containing oxidoreductases. One of two closely related 12-oxophytodienoic acid reductases. This enzyme is not expected to participate in jasmonic acid biosynthesis because during in vitro assays, it shows very little activity with the naturally occurring OPDA isomer. Up-regulated by senescence and jasmonic acid. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid.  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cellular_component|GO:0005575||ND  go_process lipid metabolic process|GO:0006629|16307367|TAS  go_process response to wounding|GO:0009611|10333582|IEP  go_process jasmonic acid biosynthetic process|GO:0009695|10872231|TAS  go_process response to salicylic acid stimulus|GO:0009751|16307367|IEP  go_process leaf senescence|GO:0010150||TAS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_process oxylipin metabolic process|GO:0031407|9346960|IDA  go_function 12-oxophytodienoate reductase activity|GO:0016629|9346960|IDA  product OPR1; 12-oxophytodienoate reductase  note OPR1; FUNCTIONS IN: 12-oxophytodienoate reductase activity; INVOLVED IN: in 8 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: seedling growth, developing seed stage; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), NADH:flavin oxidoreductase/NADH oxidase, N-terminal (InterPro:IPR001155); BEST Arabidopsis thaliana protein match is: OPR2 (TAIR:AT1G76690.1); Has 8174 Blast hits to 8158 proteins in 1107 species: Archae - 62; Bacteria - 5429; Metazoa - 29; Fungi - 538; Plants - 291; Viruses - 0; Other Eukaryotes - 1825 (source: NCBI BLink).  protein_id AT1G76680.1p  transcript_id AT1G76680.1  protein_id AT1G76680.1p  transcript_id AT1G76680.1  
At1g76680	chr1:028776982	0.0	W/28776982-28777199,28777296-28778271	AT1G76680.2  CDS  gene_syn 12-OXOPHYTODIENOATE REDUCTASE 1, F28O16.5, F28O16_5, OPR1  gene OPR1  function Encodes a a member of an alpha/beta barrel fold family of FMN-containing oxidoreductases. One of two closely related 12-oxophytodienoic acid reductases. This enzyme is not expected to participate in jasmonic acid biosynthesis because during in vitro assays, it shows very little activity with the naturally occurring OPDA isomer. Up-regulated by senescence and jasmonic acid. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid.  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cellular_component|GO:0005575||ND  go_process lipid metabolic process|GO:0006629|16307367|TAS  go_process response to wounding|GO:0009611|10333582|IEP  go_process jasmonic acid biosynthetic process|GO:0009695|10872231|TAS  go_process response to salicylic acid stimulus|GO:0009751|16307367|IEP  go_process leaf senescence|GO:0010150||TAS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_process oxylipin metabolic process|GO:0031407|9346960|IDA  go_function 12-oxophytodienoate reductase activity|GO:0016629|9346960|IDA  product OPR1; 12-oxophytodienoate reductase  note OPR1; FUNCTIONS IN: 12-oxophytodienoate reductase activity; INVOLVED IN: in 8 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: seedling growth, developing seed stage; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), NADH:flavin oxidoreductase/NADH oxidase, N-terminal (InterPro:IPR001155); BEST Arabidopsis thaliana protein match is: OPR2 (TAIR:AT1G76690.1); Has 8104 Blast hits to 8088 proteins in 1106 species: Archae - 60; Bacteria - 5402; Metazoa - 29; Fungi - 536; Plants - 291; Viruses - 0; Other Eukaryotes - 1786 (source: NCBI BLink).  protein_id AT1G76680.2p  transcript_id AT1G76680.2  protein_id AT1G76680.2p  transcript_id AT1G76680.2  
At1g76690	chr1:028778976	0.0	W/28778976-28779058,28779138-28779278,28779372-28779679,28779763-28780355	AT1G76690.1  CDS  gene_syn 12-OXOPHYTODIENOATE REDUCTASE 2, F28O16.6, F28O16_6, OPR2  gene OPR2  function Encodes one of two closely related 12-oxophytodienoic acid reductases. This enzyme is not expected to participate in jasmonic acid biosynthesis because during in vitro assays, it shows very little activity with the naturally occurring OPDA isomer.  go_component cellular_component|GO:0005575||ND  go_process response to wounding|GO:0009611|10333582|IEP  go_process jasmonic acid biosynthetic process|GO:0009695|10872231|TAS  product OPR2  note OPR2; INVOLVED IN: jasmonic acid biosynthetic process, response to wounding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, pollen developmental stages; CONTAINS InterPro DOMAIN/s: NADH:flavin oxidoreductase/NADH oxidase, N-terminal (InterPro:IPR001155), Aldolase-type TIM barrel (InterPro:IPR013785); BEST Arabidopsis thaliana protein match is: OPR1; 12-oxophytodienoate reductase (TAIR:AT1G76680.1); Has 8187 Blast hits to 8171 proteins in 1107 species: Archae - 62; Bacteria - 5432; Metazoa - 29; Fungi - 542; Plants - 292; Viruses - 0; Other Eukaryotes - 1830 (source: NCBI BLink).  protein_id AT1G76690.1p  transcript_id AT1G76690.1  protein_id AT1G76690.1p  transcript_id AT1G76690.1  
At1g76700	chr1:028782936	0.0	C/28782936-28783022,28782675-28782734,28782406-28782488,28782150-28782309,28781937-28782063,28781667-28781825,28781371-28781549,28781198-28781278,28780954-28781094,28780619-28780738	AT1G76700.1  CDS  gene_syn F28O16.7, F28O16_7  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT1G21080.1); Has 15728 Blast hits to 15653 proteins in 1913 species: Archae - 105; Bacteria - 5182; Metazoa - 3292; Fungi - 1431; Plants - 1171; Viruses - 18; Other Eukaryotes - 4529 (source: NCBI BLink).  protein_id AT1G76700.1p  transcript_id AT1G76700.1  protein_id AT1G76700.1p  transcript_id AT1G76700.1  
At1g76705	chr1:028786450	0.0	W/28786450-28786593,28786760-28786882,28786945-28787139	AT1G76705.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product calmodulin binding  note calmodulin binding; FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: IQD12 (IQ-domain 12); calmodulin binding (TAIR:AT5G03960.1); Has 21 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G76705.1p  transcript_id AT1G76705.1  protein_id AT1G76705.1p  transcript_id AT1G76705.1  
At1g76710	chr1:028792351	0.0	C/28792351-28792371,28792209-28792273,28791958-28792114,28791711-28791797,28791434-28791518,28791252-28791345,28790964-28791162,28790822-28790856,28790244-28790703,28789887-28790162	AT1G76710.1  CDS  gene_syn ASH1 RELATED PROTEIN 1, ASH1-RELATED PROTEIN 1, ASHH1, F28O16.8, F28O16_8, SDG26, SET DOMAIN GROUP 26  gene SDG26  go_component nucleus|GO:0005634||IEA  go_function histone-lysine N-methyltransferase activity|GO:0018024||IEA  go_process biological_process|GO:0008150||ND  product SDG26 (SET DOMAIN GROUP 26); histone-lysine N-methyltransferase  note SET DOMAIN GROUP 26 (SDG26); FUNCTIONS IN: histone-lysine N-methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), Post-SET zinc-binding region (InterPro:IPR003616), AWS (InterPro:IPR006560); BEST Arabidopsis thaliana protein match is: EFS (EARLY FLOWERING IN SHORT DAYS); histone methyltransferase(H3-K36 specific) / histone methyltransferase(H3-K4 specific) (TAIR:AT1G77300.2); Has 4235 Blast hits to 4168 proteins in 347 species: Archae - 0; Bacteria - 296; Metazoa - 1953; Fungi - 378; Plants - 553; Viruses - 4; Other Eukaryotes - 1051 (source: NCBI BLink).  protein_id AT1G76710.1p  transcript_id AT1G76710.1  protein_id AT1G76710.1p  transcript_id AT1G76710.1  
At1g76710	chr1:028792351	0.0	C/28792351-28792371,28792209-28792273,28791958-28792114,28791711-28791797,28791434-28791518,28791252-28791345,28790964-28791162,28790822-28790856,28790244-28790703,28789887-28790162	AT1G76710.2  CDS  gene_syn ASH1 RELATED PROTEIN 1, ASH1-RELATED PROTEIN 1, ASHH1, F28O16.8, F28O16_8, SDG26, SET DOMAIN GROUP 26  gene SDG26  go_component nucleus|GO:0005634||IEA  go_function histone-lysine N-methyltransferase activity|GO:0018024||IEA  go_process biological_process|GO:0008150||ND  product SDG26 (SET DOMAIN GROUP 26); histone-lysine N-methyltransferase  note ASH1-RELATED PROTEIN 1 (ASHH1); FUNCTIONS IN: histone-lysine N-methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), Post-SET zinc-binding region (InterPro:IPR003616), AWS (InterPro:IPR006560); BEST Arabidopsis thaliana protein match is: EFS (EARLY FLOWERING IN SHORT DAYS); histone methyltransferase(H3-K36 specific) / histone methyltransferase(H3-K4 specific) (TAIR:AT1G77300.2); Has 4235 Blast hits to 4168 proteins in 347 species: Archae - 0; Bacteria - 296; Metazoa - 1953; Fungi - 378; Plants - 553; Viruses - 4; Other Eukaryotes - 1051 (source: NCBI BLink).  protein_id AT1G76710.2p  transcript_id AT1G76710.2  protein_id AT1G76710.2p  transcript_id AT1G76710.2  
At1g76720	chr1:028798273	0.0	C/28798273-28798780,28797004-28798203,28796374-28796921,28796182-28796289,28795990-28796090,28795790-28795880,28795593-28795703,28795438-28795503,28795252-28795311,28794933-28795149,28794593-28794906,28794382-28794501,28794144-28794275	AT1G76720.1  CDS  gene_syn F28O16.9, F28O16_9  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_component cellular_component|GO:0005575||ND  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product GTP binding / GTPase/ translation initiation factor  note GTP binding / GTPase/ translation initiation factor; FUNCTIONS IN: GTP binding, GTPase activity, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation initiation factor 2 related (InterPro:IPR015760), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: GTP binding / GTPase (TAIR:AT1G76820.1); Has 143611 Blast hits to 91083 proteins in 2842 species: Archae - 1045; Bacteria - 29526; Metazoa - 55537; Fungi - 12840; Plants - 4791; Viruses - 633; Other Eukaryotes - 39239 (source: NCBI BLink).  protein_id AT1G76720.1p  transcript_id AT1G76720.1  protein_id AT1G76720.1p  transcript_id AT1G76720.1  
At1g76728	chr1:028802633	0.0	W/28802633-28802734	AT1G76728.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G76728.1p  transcript_id AT1G76728.1  protein_id AT1G76728.1p  transcript_id AT1G76728.1  
At1g76730	chr1:028804311	0.0	C/28804311-28804703,28804138-28804228,28803708-28803934,28803544-28803619,28803336-28803461,28803033-28803184	AT1G76730.1  CDS  gene_syn F28O16.10, F28O16_10  go_component chloroplast|GO:0009507|18431481|IDA  go_process folic acid and derivative biosynthetic process|GO:0009396||IEA  go_function ATP binding|GO:0005524||IEA  go_function 5-formyltetrahydrofolate cyclo-ligase activity|GO:0030272||IEA  go_process metabolic process|GO:0008152||ISS  go_function catalytic activity|GO:0003824||ISS  product 5-formyltetrahydrofolate cyclo-ligase family protein  note 5-formyltetrahydrofolate cyclo-ligase family protein; FUNCTIONS IN: catalytic activity, ATP binding, 5-formyltetrahydrofolate cyclo-ligase activity; INVOLVED IN: folic acid and derivative biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 5-formyltetrahydrofolate cyclo-ligase (InterPro:IPR002698); Has 270 Blast hits to 270 proteins in 109 species: Archae - 50; Bacteria - 73; Metazoa - 104; Fungi - 6; Plants - 17; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT1G76730.1p  transcript_id AT1G76730.1  protein_id AT1G76730.1p  transcript_id AT1G76730.1  
At1g76740	chr1:028805235	0.0	W/28805235-28805348,28805444-28807334,28807431-28809431,28809590-28809658,28809761-28809940,28810044-28810103,28810194-28810477	AT1G76740.1  CDS  gene_syn F28O16.11, F28O16_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76840.1); Has 3136 Blast hits to 2432 proteins in 274 species: Archae - 9; Bacteria - 251; Metazoa - 1340; Fungi - 208; Plants - 114; Viruses - 8; Other Eukaryotes - 1206 (source: NCBI BLink).  protein_id AT1G76740.1p  transcript_id AT1G76740.1  protein_id AT1G76740.1p  transcript_id AT1G76740.1  
At1g76750	chr1:028811107	0.0	W/28811107-28811583	AT1G76750.1  CDS  gene_syn F28O16.12, F28O16_12  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1278 (InterPro:IPR010701); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G39340.1); Has 48 Blast hits to 48 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G76750.1p  transcript_id AT1G76750.1  protein_id AT1G76750.1p  transcript_id AT1G76750.1  
At1g76760	chr1:028812763	0.0	C/28812763-28812948,28812399-28812487,28812030-28812207,28811873-28811938	AT1G76760.1  CDS  gene_syn ARABIDOPSIS THIOREDOXIN Y1, ATY1, F28O16.13, F28O16_13, THIOREDOXIN Y1, TRX-Y1  gene ATY1  function Encodes a y-type thioredoxin (Trx-y1) localized in chloroplast stroma.  go_component chloroplast thylakoid|GO:0009534|19259774|IDA  go_component chloroplast stroma|GO:0009570|19259774|IDA  go_process glycerol ether metabolic process|GO:0006662||IEA  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  product ATY1 (ARABIDOPSIS THIOREDOXIN Y1); electron carrier/ protein disulfide oxidoreductase  note ARABIDOPSIS THIOREDOXIN Y1 (ATY1); FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: glycerol ether metabolic process, cell redox homeostasis; LOCATED IN: chloroplast stroma, chloroplast thylakoid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin (InterPro:IPR005746), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Aty2 (Arabidopsis thioredoxin y2); electron carrier/ protein disulfide oxidoreductase (TAIR:AT1G43560.1); Has 15687 Blast hits to 14308 proteins in 1747 species: Archae - 187; Bacteria - 6427; Metazoa - 3051; Fungi - 833; Plants - 1210; Viruses - 12; Other Eukaryotes - 3967 (source: NCBI BLink).  protein_id AT1G76760.1p  transcript_id AT1G76760.1  protein_id AT1G76760.1p  transcript_id AT1G76760.1  
At1g76770	chr1:028813569	0.0	W/28813569-28813716,28813792-28814378	AT1G76770.1  CDS  gene_syn F28O16.14, F28O16_14  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product heat shock protein-related  note heat shock protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76780.1); Has 37113 Blast hits to 13245 proteins in 707 species: Archae - 112; Bacteria - 2320; Metazoa - 15096; Fungi - 2313; Plants - 1259; Viruses - 836; Other Eukaryotes - 15177 (source: NCBI BLink).  protein_id AT1G76770.1p  transcript_id AT1G76770.1  protein_id AT1G76770.1p  transcript_id AT1G76770.1  
At1g76780	chr1:028816641	0.0	W/28816641-28822256	AT1G76780.1  CDS  gene_syn F28O16.15, F28O16_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28770.1); Has 268398 Blast hits to 81261 proteins in 2237 species: Archae - 1423; Bacteria - 22577; Metazoa - 121235; Fungi - 23871; Plants - 9365; Viruses - 1547; Other Eukaryotes - 88380 (source: NCBI BLink).  protein_id AT1G76780.1p  transcript_id AT1G76780.1  protein_id AT1G76780.1p  transcript_id AT1G76780.1  
At1g76790	chr1:028823206	0.0	C/28823206-28823630,28822746-28823118,28822355-28822660	AT1G76790.1  CDS  gene_syn F28O16.16, F28O16_16  go_function methyltransferase activity|GO:0008168||IEA  go_function O-methyltransferase activity|GO:0008171||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_component cytosol|GO:0005829|9484457|TAS  product O-methyltransferase family 2 protein  note O-methyltransferase family 2 protein; FUNCTIONS IN: methyltransferase activity, O-methyltransferase activity, protein dimerization activity; LOCATED IN: cytosol; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase, putative (TAIR:AT1G21100.1); Has 2157 Blast hits to 2155 proteins in 428 species: Archae - 0; Bacteria - 649; Metazoa - 86; Fungi - 408; Plants - 915; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).  protein_id AT1G76790.1p  transcript_id AT1G76790.1  protein_id AT1G76790.1p  transcript_id AT1G76790.1  
At1g76800	chr1:028829345	0.0	W/28829345-28829935	AT1G76800.1  CDS  gene_syn F28O16.17, F28O16_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product nodulin, putative  note nodulin, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF125, transmembrane (InterPro:IPR008217); BEST Arabidopsis thaliana protein match is: nodulin, putative (TAIR:AT3G43660.1); Has 1002 Blast hits to 998 proteins in 323 species: Archae - 44; Bacteria - 597; Metazoa - 0; Fungi - 45; Plants - 99; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).  protein_id AT1G76800.1p  transcript_id AT1G76800.1  protein_id AT1G76800.1p  transcript_id AT1G76800.1  
At1g76810	chr1:028834387	0.0	C/28834387-28836310,28833739-28834301,28833544-28833651,28833350-28833450,28833164-28833254,28832966-28833076,28832803-28832868,28832621-28832680,28831981-28832538,28831762-28831881,28831522-28831638,28831366-28831431	AT1G76810.1  CDS  gene_syn F28O16.18, F28O16_18  go_component plasma membrane|GO:0005886|17317660|IDA  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_function translation factor activity, nucleic acid binding|GO:0008135||ISS  product eukaryotic translation initiation factor 2 family protein / eIF-2 family protein  note eukaryotic translation initiation factor 2 family protein / eIF-2 family protein; FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, GTPase activity; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation initiation factor 2 related (InterPro:IPR015760), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: GTP binding / GTPase (TAIR:AT1G76820.1); Has 171631 Blast hits to 103507 proteins in 2932 species: Archae - 954; Bacteria - 33025; Metazoa - 68027; Fungi - 17493; Plants - 6168; Viruses - 687; Other Eukaryotes - 45277 (source: NCBI BLink).  protein_id AT1G76810.1p  transcript_id AT1G76810.1  protein_id AT1G76810.1p  transcript_id AT1G76810.1  
At1g76820	chr1:028837796	0.0	W/28837796-28839349,28839429-28839976,28840064-28840171,28840265-28840365,28840461-28840551,28840638-28840748,28840838-28840903,28841030-28841089,28841192-28841749,28841841-28841960,28842069-28842185,28842278-28842343	AT1G76820.1  CDS  gene_syn F28O16.19, F28O16_19  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product GTP binding / GTPase  note GTP binding / GTPase; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation initiation factor 2 related (InterPro:IPR015760), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: GTP binding / GTPase/ translation initiation factor (TAIR:AT1G76720.1); Has 4982 Blast hits to 3570 proteins in 268 species: Archae - 2; Bacteria - 81; Metazoa - 2214; Fungi - 557; Plants - 297; Viruses - 31; Other Eukaryotes - 1800 (source: NCBI BLink).  protein_id AT1G76820.1p  transcript_id AT1G76820.1  protein_id AT1G76820.1p  transcript_id AT1G76820.1  
At1g76830	chr1:028844644	0.0	W/28844644-28845765	AT1G76830.1  CDS  gene_syn F28O16.20, F28O16_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G70960.1); Has 391 Blast hits to 381 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 391; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G76830.1p  transcript_id AT1G76830.1  protein_id AT1G76830.1p  transcript_id AT1G76830.1  
At1g76840	chr1:028847021	0.0	C/28847021-28847288,28846841-28846906,28846566-28846762	AT1G76840.1  CDS  gene_syn F28O16.22, F28O16_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76740.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G76840.1p  transcript_id AT1G76840.1  protein_id AT1G76840.1p  transcript_id AT1G76840.1  
At1g76850	chr1:028848013	0.0	W/28848013-28848438,28848723-28848877,28848986-28849071,28849198-28849392,28849474-28849601,28849681-28849839,28849980-28850084,28850340-28850414,28850620-28850757,28850850-28851035,28851164-28851292,28851424-28851550,28851634-28851844,28852246-28852361,28852479-28852707,28852935-28853028,28853122-28853199,28853287-28853343,28853472-28853621,28853765-28853971,28854061-28854282	AT1G76850.1  CDS  gene_syn EXOCYST COMPLEX COMPONENT SEC5, F7O12.2, F7O12_2, SEC5A  gene SEC5A  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process pollen germination|GO:0009846|18492870|IGI  go_process pollen tube growth|GO:0009860|18492870|IGI  go_function molecular_function|GO:0003674||ND  product SEC5A (EXOCYST COMPLEX COMPONENT SEC5)  note EXOCYST COMPLEX COMPONENT SEC5 (SEC5A); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen germination, pollen tube growth; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: SEC5B (TAIR:AT1G21170.1); Has 394 Blast hits to 372 proteins in 114 species: Archae - 0; Bacteria - 2; Metazoa - 200; Fungi - 94; Plants - 52; Viruses - 4; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT1G76850.1p  transcript_id AT1G76850.1  protein_id AT1G76850.1p  transcript_id AT1G76850.1  
At1g76860	chr1:028855521	0.0	C/28855521-28855637,28855089-28855184,28854594-28854677	AT1G76860.1  CDS  gene_syn F7O12.3, F7O12_3  go_component nucleus|GO:0005634||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative  note small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative (TAIR:AT1G21190.1); Has 944 Blast hits to 944 proteins in 205 species: Archae - 232; Bacteria - 0; Metazoa - 303; Fungi - 144; Plants - 105; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).  protein_id AT1G76860.1p  transcript_id AT1G76860.1  protein_id AT1G76860.1p  transcript_id AT1G76860.1  
At1g76870	chr1:028857250	0.0	W/28857250-28858407	AT1G76870.1  CDS  gene_syn F7O12.4, F7O12_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT1G21200.1); Has 324 Blast hits to 269 proteins in 64 species: Archae - 0; Bacteria - 2; Metazoa - 125; Fungi - 12; Plants - 63; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT1G76870.1p  transcript_id AT1G76870.1  protein_id AT1G76870.1p  transcript_id AT1G76870.1  
At1g76880	chr1:028865594	0.0	W/28865594-28865880,28866407-28867931	AT1G76880.1  CDS  gene_syn F7O12.5, F7O12_5  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product trihelix DNA-binding protein, putative  note trihelix DNA-binding protein, putative; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MADF domain (InterPro:IPR006578), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: GT2; transcription factor (TAIR:AT1G76890.2); Has 3608 Blast hits to 2954 proteins in 252 species: Archae - 0; Bacteria - 185; Metazoa - 974; Fungi - 334; Plants - 433; Viruses - 57; Other Eukaryotes - 1625 (source: NCBI BLink).  protein_id AT1G76880.1p  transcript_id AT1G76880.1  protein_id AT1G76880.1p  transcript_id AT1G76880.1  
At1g76878	chr1:028866404	0.0	C/28866404-28867969	AT1G76878.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G76880  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G76878.1  
At1g76892	chr1:028873271	0.0	W/28873271-28874758	AT1G76892.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G76890  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G76892.1  
At1g76890	chr1:028874977	0.0	C/28874977-28875203,28873211-28874711	AT1G76890.2  CDS  gene_syn AT-GT2, GT2  gene GT2  function encodes a plant trihelix DNA-binding protein  go_function transcription factor activity|GO:0003700|11118137|ISS  product GT2; transcription factor  note GT2; FUNCTIONS IN: transcription factor activity; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: trihelix DNA-binding protein, putative (TAIR:AT1G76880.1); Has 2546 Blast hits to 1460 proteins in 146 species: Archae - 0; Bacteria - 33; Metazoa - 1162; Fungi - 145; Plants - 418; Viruses - 43; Other Eukaryotes - 745 (source: NCBI BLink).  protein_id AT1G76890.2p  transcript_id AT1G76890.2  protein_id AT1G76890.2p  transcript_id AT1G76890.2  
At1g76900	chr1:028882741	0.0	W/28882741-28883100,28883197-28883284,28883365-28883497,28883591-28884377	AT1G76900.1  CDS  gene_syn AtTLP1, F7O12.7, TUBBY LIKE PROTEIN 1  gene AtTLP1  function Member of TLP family  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function phosphoric diester hydrolase activity|GO:0008081||ISS  product AtTLP1 (TUBBY LIKE PROTEIN 1); phosphoric diester hydrolase/ transcription factor  note TUBBY LIKE PROTEIN 1 (AtTLP1); FUNCTIONS IN: transcription factor activity, phosphoric diester hydrolase activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: AtTLP10 (TUBBY LIKE PROTEIN 10); phosphoric diester hydrolase/ transcription factor (TAIR:AT1G25280.1); Has 1271 Blast hits to 852 proteins in 126 species: Archae - 0; Bacteria - 101; Metazoa - 386; Fungi - 94; Plants - 328; Viruses - 57; Other Eukaryotes - 305 (source: NCBI BLink).  protein_id AT1G76900.1p  transcript_id AT1G76900.1  protein_id AT1G76900.1p  transcript_id AT1G76900.1  
At1g76900	chr1:028882741	0.0	W/28882741-28883100,28883197-28883284,28883365-28883497,28883591-28884377	AT1G76900.2  CDS  gene_syn AtTLP1, F7O12.7, TUBBY LIKE PROTEIN 1  gene AtTLP1  function Member of TLP family  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function phosphoric diester hydrolase activity|GO:0008081||ISS  product AtTLP1 (TUBBY LIKE PROTEIN 1); phosphoric diester hydrolase/ transcription factor  note TUBBY LIKE PROTEIN 1 (AtTLP1); FUNCTIONS IN: transcription factor activity, phosphoric diester hydrolase activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: AtTLP10 (TUBBY LIKE PROTEIN 10); phosphoric diester hydrolase/ transcription factor (TAIR:AT1G25280.1); Has 1271 Blast hits to 852 proteins in 126 species: Archae - 0; Bacteria - 101; Metazoa - 386; Fungi - 94; Plants - 328; Viruses - 57; Other Eukaryotes - 305 (source: NCBI BLink).  protein_id AT1G76900.2p  transcript_id AT1G76900.2  protein_id AT1G76900.2p  transcript_id AT1G76900.2  
At1g76910	chr1:028887218	0.0	W/28887218-28887267,28887354-28887470,28887588-28887650,28887751-28887831,28887996-28888104	AT1G76910.1  CDS  gene_syn F22K20.20, F22K20_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G76910.1p  transcript_id AT1G76910.1  protein_id AT1G76910.1p  transcript_id AT1G76910.1  
At1g76911	chr1:028887242	0.0	C/28887242-28887982	AT1G76911.1  pseudogenic_transcript  pseudo  function Pseudogene of AT3G62200  
At1g76920	chr1:028892295	0.0	W/28892295-28893419	AT1G76920.1  CDS  gene_syn F22K20.2, F22K20_2  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product F-box family protein (FBX3)  note F-box family protein (FBX3); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Kelch repeat type 2 (InterPro:IPR011498); Has 166 Blast hits to 166 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 166; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G76920.1p  transcript_id AT1G76920.1  protein_id AT1G76920.1p  transcript_id AT1G76920.1  
At1g76930	chr1:028896371	0.0	C/28896371-28896853,28895701-28895988	AT1G76930.2  CDS  gene_syn ATEXT1, ATEXT4, EXTENSIN 1, EXTENSIN 4, F22K20.3, F22K20_3, OBP3-RESPONSIVE GENE 5, ORG5  gene ATEXT4  function Encodes an Arabidopsis extensin gene that belongs to cell-wall hydroxyproline-rich glycoproteins. The cross-link of extensins enforces cell wall strength. Transgenic plants overexpressing this gene show an increase in stem thickness.  go_component endomembrane system|GO:0012505||IEA  go_process response to wounding|GO:0009611|10333585|IEP  go_process response to abscisic acid stimulus|GO:0009737|10333585|IEP  go_process response to salicylic acid stimulus|GO:0009751|10333585|IEP  go_process response to jasmonic acid stimulus|GO:0009753|10333585|IEP  go_function structural constituent of cell wall|GO:0005199|10333585|TAS  product ATEXT4 (EXTENSIN 4); structural constituent of cell wall  note EXTENSIN 4 (ATEXT4); FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: response to jasmonic acid stimulus, response to abscisic acid stimulus, response to wounding, response to salicylic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Extensin-like region (InterPro:IPR006706); Has 64700 Blast hits to 21915 proteins in 1083 species: Archae - 166; Bacteria - 7829; Metazoa - 26208; Fungi - 7949; Plants - 11511; Viruses - 2121; Other Eukaryotes - 8916 (source: NCBI BLink).  protein_id AT1G76930.2p  transcript_id AT1G76930.2  protein_id AT1G76930.2p  transcript_id AT1G76930.2  
At1g76930	chr1:028896371	0.0	C/28896371-28896853,28895831-28895988,28895699-28895784,28895449-28895603	AT1G76930.1  CDS  gene_syn ATEXT1, ATEXT4, EXTENSIN 1, EXTENSIN 4, F22K20.3, F22K20_3, OBP3-RESPONSIVE GENE 5, ORG5  gene ATEXT4  function Encodes an Arabidopsis extensin gene that belongs to cell-wall hydroxyproline-rich glycoproteins. The cross-link of extensins enforces cell wall strength. Transgenic plants overexpressing this gene show an increase in stem thickness.  go_component endomembrane system|GO:0012505||IEA  go_process response to wounding|GO:0009611|10333585|IEP  go_process response to abscisic acid stimulus|GO:0009737|10333585|IEP  go_process response to salicylic acid stimulus|GO:0009751|10333585|IEP  go_process response to jasmonic acid stimulus|GO:0009753|10333585|IEP  go_function structural constituent of cell wall|GO:0005199|10333585|TAS  product ATEXT4 (EXTENSIN 4); structural constituent of cell wall  note EXTENSIN 4 (ATEXT4); FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: response to jasmonic acid stimulus, response to abscisic acid stimulus, response to wounding, response to salicylic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Extensin-like region (InterPro:IPR006706); Has 64295 Blast hits to 21943 proteins in 1081 species: Archae - 160; Bacteria - 7768; Metazoa - 25973; Fungi - 7898; Plants - 11472; Viruses - 2104; Other Eukaryotes - 8920 (source: NCBI BLink).  protein_id AT1G76930.1p  transcript_id AT1G76930.1  protein_id AT1G76930.1p  transcript_id AT1G76930.1  
At1g76940	chr1:028904004	0.0	C/28904004-28904085,28903792-28903913,28903457-28903712,28903315-28903376,28903124-28903205,28902707-28902804	AT1G76940.1  CDS  gene_syn F22K20.4, F22K20_4  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nucleic acid binding / nucleotide binding (TAIR:AT1G21320.2); Has 450 Blast hits to 448 proteins in 97 species: Archae - 0; Bacteria - 0; Metazoa - 247; Fungi - 119; Plants - 55; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G76940.1p  transcript_id AT1G76940.1  protein_id AT1G76940.1p  transcript_id AT1G76940.1  
At1g76950	chr1:028906952	0.0	W/28906952-28906999,28907337-28907423,28907511-28907600,28907716-28907802,28907891-28908010,28908165-28910276,28910370-28910516,28910619-28911085,28911172-28911325	AT1G76950.1  CDS  gene_syn F22K20.5, F22K20_5, PRAF1  gene PRAF1  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function chromatin binding|GO:0003682||ISS  go_function zinc ion binding|GO:0008270||ISS  go_function Ran GTPase binding|GO:0008536||ISS  product PRAF1; Ran GTPase binding / chromatin binding / zinc ion binding  note PRAF1; FUNCTIONS IN: chromatin binding, zinc ion binding, Ran GTPase binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Zinc finger, FYVE-type (InterPro:IPR000306), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Zinc finger, FYVE-related (InterPro:IPR017455), Pleckstrin homology-type (InterPro:IPR011993), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: zinc finger protein, putative / regulator of chromosome condensation (RCC1) family protein (TAIR:AT5G42140.1); Has 16591 Blast hits to 6400 proteins in 318 species: Archae - 45; Bacteria - 1329; Metazoa - 7989; Fungi - 709; Plants - 1505; Viruses - 5; Other Eukaryotes - 5009 (source: NCBI BLink).  protein_id AT1G76950.1p  transcript_id AT1G76950.1  protein_id AT1G76950.1p  transcript_id AT1G76950.1  
At1g76952	chr1:028914667	0.0	C/28914667-28914952,28914387-28914436	AT1G76952.1  CDS  gene_syn IDL5, INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 5  gene IDL5  function Similar to Inflorescence deficient in abscission (IDA). Involved in floral organ abscission.  go_component endomembrane system|GO:0012505||IEA  go_process floral organ abscission|GO:0010227|18660431|IMP  product IDL5 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 5)  note INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 5 (IDL5); INVOLVED IN: floral organ abscission; LOCATED IN: endomembrane system; EXPRESSED IN: vascular tissue; Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G76952.1p  transcript_id AT1G76952.1  protein_id AT1G76952.1p  transcript_id AT1G76952.1  
At1g76954	chr1:028918477	0.0	C/28918477-28918537,28917866-28918017	AT1G76954.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||IEA  product unknown protein  note INVOLVED IN: defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77093.1); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G76954.1p  transcript_id AT1G76954.1  protein_id AT1G76954.1p  transcript_id AT1G76954.1  
At1g76955	chr1:028919437	0.0	C/28919437-28919536,28919172-28919308	AT1G76955.1  CDS  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Expressed protein  note Expressed protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G76955.1p  transcript_id AT1G76955.1  protein_id AT1G76955.1p  transcript_id AT1G76955.1  
At1g76960	chr1:028920824	0.0	C/28920824-28920908,28920638-28920711	AT1G76960.1  CDS  gene_syn F22K20.6, F22K20_6  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 8 growth stages; Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G76960.1p  transcript_id AT1G76960.1  protein_id AT1G76960.1p  transcript_id AT1G76960.1  
At1g76965	chr1:028921729	0.0	C/28921729-28922292	AT1G76965.1  CDS  function Encodes a Protease inhibitor/seed storage/LTP family protein  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 17749 Blast hits to 5139 proteins in 553 species: Archae - 7; Bacteria - 7447; Metazoa - 4949; Fungi - 668; Plants - 3063; Viruses - 212; Other Eukaryotes - 1403 (source: NCBI BLink).  protein_id AT1G76965.1p  transcript_id AT1G76965.1  protein_id AT1G76965.1p  transcript_id AT1G76965.1  
At1g76970	chr1:028924745	0.0	C/28924745-28924854,28924571-28924649,28924398-28924496,28924183-28924296,28923980-28924107,28923810-28923891,28923625-28923710,28923349-28923552,28922841-28923279	AT1G76970.1  CDS  gene_syn F22K20.7, F22K20_7  go_component intracellular|GO:0005622||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_component Golgi stack|GO:0005795||ISS  go_process intracellular protein transport|GO:0006886||ISS  go_process intra-Golgi vesicle-mediated transport|GO:0006891||ISS  go_function protein transporter activity|GO:0008565||ISS  product VHS domain-containing protein / GAT domain-containing protein  note VHS domain-containing protein / GAT domain-containing protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), Target of Myb protein 1 (InterPro:IPR014645), GAT (InterPro:IPR004152), VHS subgroup (InterPro:IPR018205), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: VHS domain-containing protein / GAT domain-containing protein (TAIR:AT1G21380.1); Has 1291 Blast hits to 1289 proteins in 143 species: Archae - 0; Bacteria - 2; Metazoa - 773; Fungi - 302; Plants - 157; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT1G76970.1p  transcript_id AT1G76970.1  protein_id AT1G76970.1p  transcript_id AT1G76970.1  
At1g76980	chr1:028926466	0.0	C/28926466-28927242	AT1G76980.1  CDS  gene_syn F22K20.8, F22K20_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: emb2170 (embryo defective 2170) (TAIR:AT1G21390.1); Has 33 Blast hits to 33 proteins in 14 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 7; Plants - 14; Viruses - 2; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G76980.1p  transcript_id AT1G76980.1  protein_id AT1G76980.1p  transcript_id AT1G76980.1  
At1g76980	chr1:028926545	0.0	C/28926545-28927242,28926086-28926140	AT1G76980.2  CDS  gene_syn F22K20.8, F22K20_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: emb2170 (embryo defective 2170) (TAIR:AT1G21390.1).  protein_id AT1G76980.2p  transcript_id AT1G76980.2  protein_id AT1G76980.2p  transcript_id AT1G76980.2  
At1g76990	chr1:028933387	0.0	W/28933387-28933457,28933540-28933585,28933667-28933781,28933873-28933940,28934035-28934757,28934841-28935179	AT1G76990.1  CDS  gene_syn ACR3, ACT DOMAIN REPEAT 3, F22K20.9, F22K20_9  gene ACR3  go_process nitrogen compound metabolic process|GO:0006807||IEA  go_process metabolic process|GO:0008152||IEA  go_component cytosol|GO:0005829|12481063|TAS  go_function amino acid binding|GO:0016597|12481063|ISS  product ACR3; amino acid binding  note ACR3; FUNCTIONS IN: amino acid binding; INVOLVED IN: nitrogen compound metabolic process, metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein-PII uridylyltransferase (InterPro:IPR010043), Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: ACR4 (ACT REPEAT 4); amino acid binding (TAIR:AT1G69040.2); Has 2399 Blast hits to 1316 proteins in 387 species: Archae - 0; Bacteria - 1409; Metazoa - 0; Fungi - 0; Plants - 273; Viruses - 0; Other Eukaryotes - 717 (source: NCBI BLink).  protein_id AT1G76990.1p  transcript_id AT1G76990.1  protein_id AT1G76990.1p  transcript_id AT1G76990.1  
At1g76990	chr1:028933387	0.0	W/28933387-28933457,28933540-28933585,28933667-28933781,28933873-28933940,28934035-28934757,28934841-28935179	AT1G76990.2  CDS  gene_syn ACR3, ACT DOMAIN REPEAT 3, F22K20.9, F22K20_9  gene ACR3  go_process nitrogen compound metabolic process|GO:0006807||IEA  go_process metabolic process|GO:0008152||IEA  go_component cytosol|GO:0005829|12481063|TAS  go_function amino acid binding|GO:0016597|12481063|ISS  product ACR3; amino acid binding  note ACR3; FUNCTIONS IN: amino acid binding; INVOLVED IN: nitrogen compound metabolic process, metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein-PII uridylyltransferase (InterPro:IPR010043), Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: ACR4 (ACT REPEAT 4); amino acid binding (TAIR:AT1G69040.2); Has 2399 Blast hits to 1316 proteins in 387 species: Archae - 0; Bacteria - 1409; Metazoa - 0; Fungi - 0; Plants - 273; Viruses - 0; Other Eukaryotes - 717 (source: NCBI BLink).  protein_id AT1G76990.2p  transcript_id AT1G76990.2  protein_id AT1G76990.2p  transcript_id AT1G76990.2  
At1g76990	chr1:028933387	0.0	W/28933387-28933457,28933540-28933585,28933667-28933781,28933873-28933940,28934035-28934757,28934841-28935179	AT1G76990.3  CDS  gene_syn ACR3, ACT DOMAIN REPEAT 3, F22K20.9, F22K20_9  gene ACR3  go_process nitrogen compound metabolic process|GO:0006807||IEA  go_process metabolic process|GO:0008152||IEA  go_component cytosol|GO:0005829|12481063|TAS  go_function amino acid binding|GO:0016597|12481063|ISS  product ACR3; amino acid binding  note ACR3; FUNCTIONS IN: amino acid binding; INVOLVED IN: nitrogen compound metabolic process, metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein-PII uridylyltransferase (InterPro:IPR010043), Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: ACR4 (ACT REPEAT 4); amino acid binding (TAIR:AT1G69040.2); Has 2399 Blast hits to 1316 proteins in 387 species: Archae - 0; Bacteria - 1409; Metazoa - 0; Fungi - 0; Plants - 273; Viruses - 0; Other Eukaryotes - 717 (source: NCBI BLink).  protein_id AT1G76990.3p  transcript_id AT1G76990.3  protein_id AT1G76990.3p  transcript_id AT1G76990.3  
At1g76990	chr1:028933387	0.0	W/28933387-28933457,28933540-28933585,28933667-28933781,28933873-28933940,28934035-28934757,28934841-28935179	AT1G76990.4  CDS  gene_syn ACR3, ACT DOMAIN REPEAT 3, F22K20.9, F22K20_9  gene ACR3  go_process nitrogen compound metabolic process|GO:0006807||IEA  go_process metabolic process|GO:0008152||IEA  go_component cytosol|GO:0005829|12481063|TAS  go_function amino acid binding|GO:0016597|12481063|ISS  product ACR3; amino acid binding  note ACR3; FUNCTIONS IN: amino acid binding; INVOLVED IN: nitrogen compound metabolic process, metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein-PII uridylyltransferase (InterPro:IPR010043), Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: ACR4 (ACT REPEAT 4); amino acid binding (TAIR:AT1G69040.2); Has 2399 Blast hits to 1316 proteins in 387 species: Archae - 0; Bacteria - 1409; Metazoa - 0; Fungi - 0; Plants - 273; Viruses - 0; Other Eukaryotes - 717 (source: NCBI BLink).  protein_id AT1G76990.4p  transcript_id AT1G76990.4  protein_id AT1G76990.4p  transcript_id AT1G76990.4  
At1g76990	chr1:028933387	0.0	W/28933387-28933457,28933540-28933585,28933667-28933781,28933873-28933940,28934035-28934757,28934841-28935179	AT1G76990.5  CDS  gene_syn ACR3, ACT DOMAIN REPEAT 3, F22K20.9, F22K20_9  gene ACR3  go_process nitrogen compound metabolic process|GO:0006807||IEA  go_process metabolic process|GO:0008152||IEA  go_component cytosol|GO:0005829|12481063|TAS  go_function amino acid binding|GO:0016597|12481063|ISS  product ACR3; amino acid binding  note ACR3; FUNCTIONS IN: amino acid binding; INVOLVED IN: nitrogen compound metabolic process, metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein-PII uridylyltransferase (InterPro:IPR010043), Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: ACR4 (ACT REPEAT 4); amino acid binding (TAIR:AT1G69040.2); Has 2399 Blast hits to 1316 proteins in 387 species: Archae - 0; Bacteria - 1409; Metazoa - 0; Fungi - 0; Plants - 273; Viruses - 0; Other Eukaryotes - 717 (source: NCBI BLink).  protein_id AT1G76990.5p  transcript_id AT1G76990.5  protein_id AT1G76990.5p  transcript_id AT1G76990.5  
At1g76994	chr1:028937637	0.0	W/28937637-28937798	AT1G76994.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G76994.1p  transcript_id AT1G76994.1  protein_id AT1G76994.1p  transcript_id AT1G76994.1  
At1g77000	chr1:028940888	0.0	W/28940888-28941105,28941378-28941726,28941822-28941963,28942028-28942401	AT1G77000.1  CDS  gene_syn ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, ATSKP2;2, F22K20.10, F22K20_10, SKP2B  gene SKP2B  function AtSKP2;2 is a homolog of human SKP2, the human F-box protein that recruits E2F1. Contains an F-box motif at the N-terminal region and a C-terminal Leu-rich repeat domain. Forms part of an E3-ubiquitin-ligase SCF (Skp1, cullin, F-box) complex and recruits phosphorylated AtE2Fc, a transcriptional factor that might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis. AtSKP2;1 (At1g21410) and AtSKP2;2 (At1g77000) may be duplicated genes. AtSKP2b may also be involved in the degradation of KRP1/ICK1, a CDK inhibitor.  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_process heat acclimation|GO:0010286|16807682|IEP  go_process proteolysis involved in cellular protein catabolic process|GO:0051603|18005227|IMP  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product SKP2B; ubiquitin-protein ligase  note SKP2B; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: proteolysis involved in cellular protein catabolic process, heat acclimation, ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: SKP2A (TAIR:AT1G21410.1); Has 6837 Blast hits to 2867 proteins in 180 species: Archae - 0; Bacteria - 397; Metazoa - 3306; Fungi - 699; Plants - 1768; Viruses - 6; Other Eukaryotes - 661 (source: NCBI BLink).  protein_id AT1G77000.1p  transcript_id AT1G77000.1  protein_id AT1G77000.1p  transcript_id AT1G77000.1  
At1g77010	chr1:028942710	0.0	W/28942710-28944797	AT1G77010.1  CDS  gene_syn F22K20.11, F22K20_11  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G13600.1); Has 16318 Blast hits to 4970 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 101; Fungi - 29; Plants - 15899; Viruses - 0; Other Eukaryotes - 289 (source: NCBI BLink).  protein_id AT1G77010.1p  transcript_id AT1G77010.1  protein_id AT1G77010.1p  transcript_id AT1G77010.1  
At1g77020	chr1:028946781	0.0	C/28946781-28946867,28946640-28946699,28946467-28946549,28946223-28946376,28946007-28946136,28945590-28945927,28945433-28945513,28945222-28945347,28945056-28945136	AT1G77020.1  CDS  gene_syn F22K20.12, F22K20_12  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT1G76700.1); Has 15976 Blast hits to 15896 proteins in 1930 species: Archae - 107; Bacteria - 5262; Metazoa - 3279; Fungi - 1499; Plants - 1189; Viruses - 18; Other Eukaryotes - 4622 (source: NCBI BLink).  protein_id AT1G77020.1p  transcript_id AT1G77020.1  protein_id AT1G77020.1p  transcript_id AT1G77020.1  
At1g77040	chr1:028947554	0.0	C/28947554-28947625	AT1G77040.1  tRNA  gene_syn 50819.TRNA-GLN-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gln (anticodon: TTG)  transcript_id AT1G77040.1  
At1g77030	chr1:028951151	0.0	C/28951151-28951526,28949899-28951060,28949726-28949777,28949443-28949556,28949280-28949354,28948905-28948957,28948708-28948789,28948568-28948624,28948357-28948483,28947910-28948266,28947492-28947712	AT1G77030.1  CDS  gene_syn F22K20.22, F22K20_22  go_component nucleus|GO:0005634||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides|GO:0016818||IEA  go_process biological_process|GO:0008150||ND  product ATP binding / ATP-dependent helicase/ RNA binding / helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding  note ATP binding / ATP-dependent helicase/ RNA binding / helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding; FUNCTIONS IN: in 6 functions; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DBP10CT (InterPro:IPR012541), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (RH10) (TAIR:AT5G60990.1); Has 46457 Blast hits to 14119 proteins in 1029 species: Archae - 31; Bacteria - 19714; Metazoa - 12532; Fungi - 2798; Plants - 5760; Viruses - 615; Other Eukaryotes - 5007 (source: NCBI BLink).  protein_id AT1G77030.1p  transcript_id AT1G77030.1  protein_id AT1G77030.1p  transcript_id AT1G77030.1  
At1g77060	chr1:028953157	0.0	C/28953157-28953449,28953000-28953073,28952669-28952751,28952527-28952551,28952254-28952429,28951804-28952172	AT1G77060.1  CDS  gene_syn F22K20.14, F22K20_14  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  product mutase family protein  note mutase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Isocitrate lyase and phosphorylmutase, conserved site (InterPro:IPR018523), Isocitrate lyase and phosphorylmutase (InterPro:IPR000918); BEST Arabidopsis thaliana protein match is: mutase family protein (TAIR:AT1G21440.1); Has 6429 Blast hits to 6429 proteins in 855 species: Archae - 72; Bacteria - 2891; Metazoa - 29; Fungi - 318; Plants - 109; Viruses - 0; Other Eukaryotes - 3010 (source: NCBI BLink).  protein_id AT1G77060.1p  transcript_id AT1G77060.1  protein_id AT1G77060.1p  transcript_id AT1G77060.1  
At1g77080	chr1:028955679	0.0	W/28955679-28955863,28958334-28958391,28958602-28958663,28958745-28958844,28958953-28958994,28959330-28959371,28959578-28959610	AT1G77080.5  CDS  gene_syn AGL27, FLM, FLOWERING LOCUS M, MADS AFFECTING FLOWERING 1, MAF1  gene MAF1  function MADS domain protein - flowering regulator that is closely related to FLC. Deletion of this locus in Nd ecotype is correlated with earlier flowering in short days suggesting function as a negative regulator of flowering.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|11115127|ISS  go_process regulation of flower development|GO:0009909|11351076|IMP  go_process negative regulation of flower development|GO:0009910|15695584|IGI  go_process photoperiodism, flowering|GO:0048573|18799658|IMP  go_function transcription factor activity|GO:0003700|11115127|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11351076|ISS  product MAF1 (MADS AFFECTING FLOWERING 1); transcription factor  note MADS AFFECTING FLOWERING 1 (MAF1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: photoperiodism, flowering, negative regulation of flower development, regulation of transcription, DNA-dependent, regulation of flower development; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: MAF3 (MADS AFFECTING FLOWERING 3); transcription factor (TAIR:AT5G65060.1).  protein_id AT1G77080.5p  transcript_id AT1G77080.5  protein_id AT1G77080.5p  transcript_id AT1G77080.5  
At1g77080	chr1:028955679	0.0	W/28955679-28955863,28958334-28958391,28958602-28958663,28958745-28958844,28958953-28958994,28959330-28959371,28959744-28959845	AT1G77080.4  CDS  gene_syn AGL27, FLM, FLOWERING LOCUS M, MADS AFFECTING FLOWERING 1, MAF1  gene MAF1  function MADS domain protein - flowering regulator that is closely related to FLC. Deletion of this locus in Nd ecotype is correlated with earlier flowering in short days suggesting function as a negative regulator of flowering.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|11115127|ISS  go_process regulation of flower development|GO:0009909|11351076|IMP  go_process negative regulation of flower development|GO:0009910|15695584|IGI  go_process photoperiodism, flowering|GO:0048573|18799658|IMP  go_function transcription factor activity|GO:0003700|11115127|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11351076|ISS  product MAF1 (MADS AFFECTING FLOWERING 1); transcription factor  note MADS AFFECTING FLOWERING 1 (MAF1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: photoperiodism, flowering, negative regulation of flower development, regulation of transcription, DNA-dependent, regulation of flower development; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: MAF3 (MADS AFFECTING FLOWERING 3); transcription factor (TAIR:AT5G65060.1); Has 4846 Blast hits to 4842 proteins in 632 species: Archae - 0; Bacteria - 0; Metazoa - 556; Fungi - 201; Plants - 4036; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT1G77080.4p  transcript_id AT1G77080.4  protein_id AT1G77080.4p  transcript_id AT1G77080.4  
At1g77080	chr1:028955679	0.0	W/28955679-28955863,28958456-28958501,28958602-28958663,28958745-28958844,28958953-28958994,28959330-28959371,28959744-28959845	AT1G77080.2  CDS  gene_syn AGL27, FLM, FLOWERING LOCUS M, MADS AFFECTING FLOWERING 1, MAF1  gene MAF1  function MADS domain protein - flowering regulator that is closely related to FLC. Deletion of this locus in Nd ecotype is correlated with earlier flowering in short days suggesting function as a negative regulator of flowering.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|11115127|ISS  go_process regulation of flower development|GO:0009909|11351076|IMP  go_process negative regulation of flower development|GO:0009910|15695584|IGI  go_process photoperiodism, flowering|GO:0048573|18799658|IMP  go_function transcription factor activity|GO:0003700|11115127|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11351076|ISS  product MAF1 (MADS AFFECTING FLOWERING 1); transcription factor  note MADS AFFECTING FLOWERING 1 (MAF1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: photoperiodism, flowering, negative regulation of flower development, regulation of transcription, DNA-dependent, regulation of flower development; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: MAF3 (MADS AFFECTING FLOWERING 3); transcription factor (TAIR:AT5G65060.1); Has 4660 Blast hits to 4657 proteins in 600 species: Archae - 0; Bacteria - 0; Metazoa - 547; Fungi - 201; Plants - 3859; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT1G77080.2p  transcript_id AT1G77080.2  protein_id AT1G77080.2p  transcript_id AT1G77080.2  
At1g77080	chr1:028958311	0.0	W/28958311-28958391,28958602-28958844,28958953-28959054	AT1G77080.3  CDS  gene_syn AGL27, FLM, FLOWERING LOCUS M, MADS AFFECTING FLOWERING 1, MAF1  gene MAF1  function MADS domain protein - flowering regulator that is closely related to FLC. Deletion of this locus in Nd ecotype is correlated with earlier flowering in short days suggesting function as a negative regulator of flowering.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|11115127|ISS  go_process regulation of flower development|GO:0009909|11351076|IMP  go_process negative regulation of flower development|GO:0009910|15695584|IGI  go_process photoperiodism, flowering|GO:0048573|18799658|IMP  go_function transcription factor activity|GO:0003700|11115127|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11351076|ISS  product MAF1 (MADS AFFECTING FLOWERING 1); transcription factor  note MADS AFFECTING FLOWERING 1 (MAF1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: photoperiodism, flowering, negative regulation of flower development, regulation of transcription, DNA-dependent, regulation of flower development; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: MAF3 (MADS AFFECTING FLOWERING 3); transcription factor (TAIR:AT5G65060.1); Has 377 Blast hits to 377 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 377; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G77080.3p  transcript_id AT1G77080.3  protein_id AT1G77080.3p  transcript_id AT1G77080.3  
At1g77090	chr1:028961602	0.0	C/28961602-28961875,28961287-28961390,28961091-28961202,28960746-28960973,28960576-28960640	AT1G77090.1  CDS  gene_syn F22K20.16, F22K20_16  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_process photosynthesis|GO:0015979||IEA  go_function calcium ion binding|GO:0005509||IEA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  product thylakoid lumenal 29.8 kDa protein  note thylakoid lumenal 29.8 kDa protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast stroma, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); BEST Arabidopsis thaliana protein match is: thylakoid lumenal 20 kDa protein (TAIR:AT3G56650.1); Has 139 Blast hits to 139 proteins in 25 species: Archae - 0; Bacteria - 19; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT1G77090.1p  transcript_id AT1G77090.1  protein_id AT1G77090.1p  transcript_id AT1G77090.1  
At1g77093	chr1:028962508	0.0	W/28962508-28962568,28962974-28963149	AT1G77093.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G77093.1p  transcript_id AT1G77093.1  protein_id AT1G77093.1p  transcript_id AT1G77093.1  
At1g77095	chr1:028964016	0.0	C/28964016-28965367	AT1G77095.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 9.8e-14 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At1g77100	chr1:028966809	0.0	C/28966809-28967066,28966537-28966722,28966267-28966432,28965772-28966172	AT1G77100.1  CDS  gene_syn F22K20.17, F22K20_17  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: cationic peroxidase, putative (TAIR:AT4G25980.1); Has 2838 Blast hits to 2823 proteins in 204 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 134; Plants - 2678; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G77100.1p  transcript_id AT1G77100.1  protein_id AT1G77100.1p  transcript_id AT1G77100.1  
At1g77110	chr1:028970855	0.0	W/28970855-28971285,28971551-28972182,28972894-28973155,28973259-28973344,28973420-28973577,28974144-28974220,28974342-28974408	AT1G77110.1  CDS  gene_syn F22K20.18, F22K20_18, PIN-FORMED 6, PIN6  gene PIN6  function Rate-limiting factor in saturable efflux of auxins. PINs are directly involved of in catalyzing cellular auxin efflux.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process auxin polar transport|GO:0009926|16601150|IMP  go_process auxin polar transport|GO:0009926||ISS  go_function transporter activity|GO:0005215||ISS  go_function auxin:hydrogen symporter activity|GO:0009672||ISS  product PIN6 (PIN-FORMED 6); auxin:hydrogen symporter/ transporter  note PIN-FORMED 6 (PIN6); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity; INVOLVED IN: auxin polar transport; LOCATED IN: plasma membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: PIN1 (PIN-FORMED 1); transporter (TAIR:AT1G73590.1); Has 851 Blast hits to 763 proteins in 241 species: Archae - 24; Bacteria - 433; Metazoa - 8; Fungi - 0; Plants - 262; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).  protein_id AT1G77110.1p  transcript_id AT1G77110.1  protein_id AT1G77110.1p  transcript_id AT1G77110.1  
At1g77120	chr1:028975509	0.0	W/28975509-28975542,28975674-28975810,28975914-28975960,28976048-28976532,28976619-28976776,28976863-28977024,28977100-28977216	AT1G77120.1  CDS  gene_syn ADH, ADH1, ALCOHOL DEHYDROGENASE, ALCOHOL DEHYDROGENASE 1, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH, ATADH1, F22K20.19, F22K20_19  gene ADH1  function Catalyzes the reduction of acetaldehyde using NADH as reductant. Requires zinc for activity. Dimer. Anaerobic response polypeptide (ANP). Fermentation. The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytosol|GO:0005829|18433157|IDA  go_process response to hypoxia|GO:0001666|15734912|IEP  go_process response to osmotic stress|GO:0006970|11779861|IGI  go_process response to salt stress|GO:0009651|11351099|IEP  go_process cellular respiration|GO:0045333||TAS  go_function alcohol dehydrogenase activity|GO:0004022|2277648|IMP  go_function alcohol dehydrogenase activity|GO:0004022|2937058|ISS  product ADH1 (ALCOHOL DEHYDROGENASE 1); alcohol dehydrogenase  note ALCOHOL DEHYDROGENASE 1 (ADH1); FUNCTIONS IN: alcohol dehydrogenase activity; INVOLVED IN: response to cadmium ion, cellular respiration, response to salt stress, response to hypoxia, response to osmotic stress; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: HOT5 (sensitive to hot temperatures 5); S-(hydroxymethyl)glutathione dehydrogenase/ S-nitrosoglutathione reductase (TAIR:AT5G43940.1); Has 22133 Blast hits to 22117 proteins in 1984 species: Archae - 363; Bacteria - 12190; Metazoa - 1231; Fungi - 1665; Plants - 3080; Viruses - 3; Other Eukaryotes - 3601 (source: NCBI BLink).  protein_id AT1G77120.1p  transcript_id AT1G77120.1  protein_id AT1G77120.1p  transcript_id AT1G77120.1  
At1g77122	chr1:028978362	0.0	C/28978362-28978674,28978183-28978259,28977804-28978088,28977427-28977723	AT1G77122.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0090 (InterPro:IPR003728); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69210.1); Has 5575 Blast hits to 1500 proteins in 157 species: Archae - 0; Bacteria - 130; Metazoa - 4006; Fungi - 245; Plants - 178; Viruses - 112; Other Eukaryotes - 904 (source: NCBI BLink).  protein_id AT1G77122.1p  transcript_id AT1G77122.1  protein_id AT1G77122.1p  transcript_id AT1G77122.1  
At1g77130	chr1:028981176	0.0	C/28981176-28981228,28980177-28980946,28979066-28980099	AT1G77130.1  CDS  gene_syn PGSIP2, PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 2, T14N5.1, T14N5_1  gene PGSIP2  go_component cellular_component|GO:0005575||ND  go_process biosynthetic process|GO:0009058||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product PGSIP2 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 2); transferase, transferring glycosyl groups  note PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 2 (PGSIP2); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1); transferase, transferring glycosyl groups (TAIR:AT3G18660.1); Has 947 Blast hits to 943 proteins in 205 species: Archae - 0; Bacteria - 93; Metazoa - 224; Fungi - 180; Plants - 307; Viruses - 72; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT1G77130.1p  transcript_id AT1G77130.1  protein_id AT1G77130.1p  transcript_id AT1G77130.1  
At1g77131	chr1:028981414	0.0	C/28981414-28983463	AT1G77131.1  pseudogenic_transcript  pseudo  function pseudogene of PGSIP, glycogenin glucosyltransferase  
At1g77138	chr1:028982766	0.0	W/28982766-28983469	AT1G77138.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G77138.1  
At1g77140	chr1:028984163	0.0	W/28984163-28984252,28984389-28984590,28984685-28984764,28985042-28985269,28985397-28985522,28985633-28985716,28985787-28985928,28986033-28986211,28986429-28986584,28986823-28986930,28987016-28987137,28987259-28987390,28987621-28987681	AT1G77140.1  CDS  gene_syn ATVPS45, T14N5.2, T14N5_2, VACUOLAR PROTEIN SORTING 45, VPS45  gene VPS45  function A peripheral membrane protein that associates with microsomal membranes, likely to function in the transport of proteins to the vacuole. It is a member of Sec1p protein family. It may be involved in the regulation of vesicle fusion reactions through interaction with t-SNAREs at the Golgi trans face.  go_component trans-Golgi network|GO:0005802|10888666|IDA  go_component trans-Golgi network|GO:0005802||NAS  go_component plant-type vacuole membrane|GO:0009705|9625693|IDA  go_process intracellular protein transport|GO:0006886|9625693|IGI  go_process protein secretion|GO:0009306||ISS  go_function protein transporter activity|GO:0008565||ISS  product VPS45 (VACUOLAR PROTEIN SORTING 45); protein transporter  note VACUOLAR PROTEIN SORTING 45 (VPS45); FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, protein secretion; LOCATED IN: trans-Golgi network, plant-type vacuole membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); BEST Arabidopsis thaliana protein match is: SEC1A (SIMILAR TO ELECTRON CAREER 1A); protein transporter (TAIR:AT1G02010.1); Has 1329 Blast hits to 1314 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 589; Fungi - 337; Plants - 102; Viruses - 0; Other Eukaryotes - 301 (source: NCBI BLink).  protein_id AT1G77140.1p  transcript_id AT1G77140.1  protein_id AT1G77140.1p  transcript_id AT1G77140.1  
At1g77145	chr1:028991177	0.0	C/28991177-28991290,28990888-28991089,28990178-28990644	AT1G77145.1  CDS  go_component nucleus|GO:0005634|14617066|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77160.1); Has 217 Blast hits to 217 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G77145.1p  transcript_id AT1G77145.1  protein_id AT1G77145.1p  transcript_id AT1G77145.1  
At1g77150	chr1:028993029	0.0	C/28993029-28993170,28992876-28992970	AT1G77150.1  CDS  gene_syn T14N5.22, T14N5_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G77170.1); Has 1851 Blast hits to 1843 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1851; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G77150.1p  transcript_id AT1G77150.1  protein_id AT1G77150.1p  transcript_id AT1G77150.1  
At1g77160	chr1:028996410	0.0	C/28996410-28996523,28996118-28996334,28995388-28995848	AT1G77160.1  CDS  gene_syn T14N5.4, T14N5_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77145.1); Has 216 Blast hits to 216 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 214; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G77160.1p  transcript_id AT1G77160.1  protein_id AT1G77160.1p  transcript_id AT1G77160.1  
At1g77170	chr1:028998133	0.0	C/28998133-28999536	AT1G77170.1  CDS  gene_syn T14N5.20, T14N5_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21065.1); Has 13329 Blast hits to 4897 proteins in 128 species: Archae - 0; Bacteria - 6; Metazoa - 82; Fungi - 52; Plants - 12909; Viruses - 0; Other Eukaryotes - 280 (source: NCBI BLink).  protein_id AT1G77170.1p  transcript_id AT1G77170.1  protein_id AT1G77170.1p  transcript_id AT1G77170.1  
At1g77180	chr1:028999791	0.0	C/28999791-29001632	AT1G77180.1  CDS  gene_syn T14N5.5, T14N5_5  function Encodes a protein with a putative role in mRNA splicing.  go_component nucleus|GO:0005634|14617066|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_function protein binding|GO:0005515||IEA  go_process RNA splicing|GO:0008380|15575968|ISS  product chromatin protein family  note chromatin protein family; FUNCTIONS IN: protein binding; INVOLVED IN: RNA splicing; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SKI-interacting protein, SKIP (InterPro:IPR017862), SKI-interacting protein SKIP, SNW domain (InterPro:IPR004015); Has 9448 Blast hits to 6184 proteins in 359 species: Archae - 12; Bacteria - 319; Metazoa - 4867; Fungi - 1160; Plants - 474; Viruses - 46; Other Eukaryotes - 2570 (source: NCBI BLink).  protein_id AT1G77180.1p  transcript_id AT1G77180.1  protein_id AT1G77180.1p  transcript_id AT1G77180.1  
At1g77180	chr1:028999791	0.0	C/28999791-29001632	AT1G77180.2  CDS  gene_syn T14N5.5, T14N5_5  function Encodes a protein with a putative role in mRNA splicing.  go_component nucleolus|GO:0005730|15496452|IDA  go_function protein binding|GO:0005515||IEA  go_process RNA splicing|GO:0008380|15575968|ISS  product chromatin protein family  note chromatin protein family; FUNCTIONS IN: protein binding; INVOLVED IN: RNA splicing; LOCATED IN: nucleolus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SKI-interacting protein, SKIP (InterPro:IPR017862), SKI-interacting protein SKIP, SNW domain (InterPro:IPR004015); Has 9448 Blast hits to 6184 proteins in 359 species: Archae - 12; Bacteria - 319; Metazoa - 4867; Fungi - 1160; Plants - 474; Viruses - 46; Other Eukaryotes - 2570 (source: NCBI BLink).  protein_id AT1G77180.2p  transcript_id AT1G77180.2  protein_id AT1G77180.2p  transcript_id AT1G77180.2  
At1g77190	chr1:029002205	0.0	C/29002205-29002286	AT1G77190.1  tRNA  gene_syn 50969.TRNA-SER-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: GCT)  transcript_id AT1G77190.1  
At1g77200	chr1:029004357	0.0	C/29004357-29005091	AT1G77200.1  CDS  gene_syn T14N5.6, T14N5_6  function encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor TINY, putative  note AP2 domain-containing transcription factor TINY, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: TINY2 (TINY2); DNA binding / transcription factor (TAIR:AT5G11590.1); Has 3942 Blast hits to 3763 proteins in 216 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 20; Plants - 3786; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink).  protein_id AT1G77200.1p  transcript_id AT1G77200.1  protein_id AT1G77200.1p  transcript_id AT1G77200.1  
At1g77210	chr1:029010839	0.0	C/29010839-29010980,29010259-29010581,29009544-29010173,29009036-29009455	AT1G77210.1  CDS  gene_syn T14N5.7, T14N5_7  go_component plasma membrane|GO:0005886|17317660|IDA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product sugar transporter, putative  note sugar transporter, putative; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter, putative (TAIR:AT4G02050.1); Has 17881 Blast hits to 17589 proteins in 1126 species: Archae - 220; Bacteria - 7279; Metazoa - 3596; Fungi - 4483; Plants - 1327; Viruses - 0; Other Eukaryotes - 976 (source: NCBI BLink).  protein_id AT1G77210.1p  transcript_id AT1G77210.1  protein_id AT1G77210.1p  transcript_id AT1G77210.1  
At1g77215	chr1:029011477	0.0	C/29011477-29012096	AT1G77215.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G77215.1  
At1g77220	chr1:029013232	0.0	W/29013232-29013447,29013622-29013678,29013791-29013899,29014099-29014283,29014365-29014453,29014558-29014813,29014902-29015147,29015234-29015530	AT1G77220.1  CDS  gene_syn T14N5.8, T14N5_8  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF300 (InterPro:IPR005178); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38360.2); Has 602 Blast hits to 598 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 258; Fungi - 128; Plants - 129; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).  protein_id AT1G77220.1p  transcript_id AT1G77220.1  protein_id AT1G77220.1p  transcript_id AT1G77220.1  
At1g77230	chr1:029016129	0.0	W/29016129-29016389,29017145-29017283,29017335-29017423,29017549-29017635,29017736-29017873	AT1G77230.1  CDS  gene_syn T14N5.9, T14N5_9  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product tetratricopeptide repeat (TPR)-containing protein  note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT4G08320.1); Has 1223 Blast hits to 1089 proteins in 233 species: Archae - 84; Bacteria - 221; Metazoa - 356; Fungi - 107; Plants - 127; Viruses - 0; Other Eukaryotes - 328 (source: NCBI BLink).  protein_id AT1G77230.1p  transcript_id AT1G77230.1  protein_id AT1G77230.1p  transcript_id AT1G77230.1  
At1g77235	chr1:029016520	0.0	W/29016520-29016828	AT1G77235.1  miRNA  gene_syn MICRORNA402, MIR402  gene MIR402  function Encodes a microRNA that targets DML3. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUCGAGGCCUAUUAAACCUCUG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR402 (MICRORNA402); miRNA  transcript_id AT1G77235.1  
At1g77240	chr1:029017958	0.0	C/29017958-29019595	AT1G77240.1  CDS  gene_syn T14N5.10, T14N5_10  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  product AMP-binding protein, putative  note AMP-binding protein, putative; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-binding protein, putative (TAIR:AT1G21540.1); Has 51513 Blast hits to 47840 proteins in 2235 species: Archae - 556; Bacteria - 28164; Metazoa - 2877; Fungi - 2556; Plants - 1264; Viruses - 1; Other Eukaryotes - 16095 (source: NCBI BLink).  protein_id AT1G77240.1p  transcript_id AT1G77240.1  protein_id AT1G77240.1p  transcript_id AT1G77240.1  
At1g77250	chr1:029022684	0.0	C/29022684-29022938,29021768-29022070,29021462-29021551,29020444-29021364	AT1G77250.1  CDS  gene_syn T14N5.11, T14N5_11  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product PHD finger family protein  note PHD finger family protein; FUNCTIONS IN: protein binding, DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: MBD9; DNA binding / methyl-CpG binding (TAIR:AT3G01460.1); Has 3679 Blast hits to 2567 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 2695; Fungi - 280; Plants - 432; Viruses - 0; Other Eukaryotes - 272 (source: NCBI BLink).  protein_id AT1G77250.1p  transcript_id AT1G77250.1  protein_id AT1G77250.1p  transcript_id AT1G77250.1  
At1g77260	chr1:029026082	0.0	C/29026082-29026699,29025854-29026003,29025486-29025756,29025284-29025394,29025034-29025193,29024627-29024884,29024427-29024549,29024251-29024328,29023961-29024159	AT1G77260.1  CDS  gene_syn T14N5.19, T14N5_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product dehydration-responsive protein-related  note dehydration-responsive protein-related; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive family protein (TAIR:AT2G39750.1); Has 463 Blast hits to 457 proteins in 31 species: Archae - 0; Bacteria - 8; Metazoa - 2; Fungi - 0; Plants - 450; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G77260.1p  transcript_id AT1G77260.1  protein_id AT1G77260.1p  transcript_id AT1G77260.1  
At1g77270	chr1:029028342	0.0	W/29028342-29030012,29030118-29030343,29030723-29030805,29031000-29031068	AT1G77270.1  CDS  gene_syn T14N5.12, T14N5_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G07730.1); Has 365 Blast hits to 331 proteins in 76 species: Archae - 0; Bacteria - 25; Metazoa - 174; Fungi - 10; Plants - 59; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).  protein_id AT1G77270.1p  transcript_id AT1G77270.1  protein_id AT1G77270.1p  transcript_id AT1G77270.1  
At1g77280	chr1:029035807	0.0	C/29035807-29035882,29034403-29034585,29034203-29034300,29033839-29034091,29033042-29033773,29032694-29032942,29032439-29032602,29032267-29032346,29032037-29032184,29031794-29031949,29031468-29031713	AT1G77280.1  CDS  gene_syn T14N5.13, T14N5_13  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process response to stress|GO:0006950||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G21590.1); Has 84564 Blast hits to 83581 proteins in 2224 species: Archae - 56; Bacteria - 7535; Metazoa - 36665; Fungi - 6818; Plants - 18677; Viruses - 384; Other Eukaryotes - 14429 (source: NCBI BLink).  protein_id AT1G77280.1p  transcript_id AT1G77280.1  protein_id AT1G77280.1p  transcript_id AT1G77280.1  
At1g77290	chr1:029038917	0.0	W/29038917-29039125,29039224-29039815	AT1G77290.1  CDS  gene_syn T14N5.14, T14N5_14  go_component plasma membrane|GO:0005886|17317660|IDA  go_process pentachlorophenol catabolic process|GO:0019338||IEA  product tetrachloro-p-hydroquinone reductive dehalogenase-related  note tetrachloro-p-hydroquinone reductive dehalogenase-related; INVOLVED IN: pentachlorophenol catabolic process; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: GSTF5 (GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5); glutathione transferase (TAIR:AT1G02940.1); Has 3113 Blast hits to 3113 proteins in 606 species: Archae - 0; Bacteria - 1377; Metazoa - 488; Fungi - 52; Plants - 474; Viruses - 0; Other Eukaryotes - 722 (source: NCBI BLink).  protein_id AT1G77290.1p  transcript_id AT1G77290.1  protein_id AT1G77290.1p  transcript_id AT1G77290.1  
At1g77290	chr1:029038917	0.0	W/29038917-29039125,29039224-29039815	AT1G77290.2  CDS  gene_syn T14N5.14, T14N5_14  go_component plasma membrane|GO:0005886|17317660|IDA  product tetrachloro-p-hydroquinone reductive dehalogenase-related  note tetrachloro-p-hydroquinone reductive dehalogenase-related; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: GSTF5 (GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5); glutathione transferase (TAIR:AT1G02940.1); Has 3113 Blast hits to 3113 proteins in 606 species: Archae - 0; Bacteria - 1377; Metazoa - 488; Fungi - 52; Plants - 474; Viruses - 0; Other Eukaryotes - 722 (source: NCBI BLink).  protein_id AT1G77290.2p  transcript_id AT1G77290.2  protein_id AT1G77290.2p  transcript_id AT1G77290.2  
At1g77300	chr1:029046344	0.0	C/29046344-29048810,29045949-29046153,29045194-29045366,29044996-29045075,29044734-29044865,29044534-29044650,29044310-29044402,29043620-29043697,29043439-29043495,29042646-29043366,29042507-29042562,29042200-29042276,29042015-29042097,29041513-29041536,29041142-29041187,29040936-29041032	AT1G77300.2  CDS  gene_syn CAROTENOID CHLOROPLAST REGULATORY1, CCR1, EARLY FLOWERING IN SHORT DAYS, EFS, SDG8, SET DOMAIN GROUP 8, T14N5.15, T14N5_15  gene EFS  function Encodes a protein with histone lysine N-methyltransferase activity required specifically for the trimethylation of H3-K4 in FLC chromatin (and not in H3-K36 dimethylation). Acts as an inhibitor of flowering specifically involved in the autonomous promotion pathway. EFS also regulates the expression of genes involved in carotenoid biosynthesis.Modification of histone methylation at the CRTISO locus reduces transcript levels 90%. The increased shoot branching seen in some EFS mutants is likely due to the carotenoid biosynthesis defect having an effect on stringolactones.  go_component nucleus|GO:0005634||IEA  go_process negative regulation of flower development|GO:0009910|10518493|IMP  go_process secondary shoot formation|GO:0010223|19174535|IMP  go_process carotenoid metabolic process|GO:0016116|19174535|IMP  go_process positive regulation of histone methylation|GO:0031062|16258034|IDA  go_process regulation of gene expression, epigenetic|GO:0040029|19174535|IMP  go_function histone methyltransferase activity (H3-K4 specific)|GO:0042800|16258034|IDA  go_function histone methyltransferase activity (H3-K36 specific)|GO:0046975|16258034|IDA  product EFS (EARLY FLOWERING IN SHORT DAYS); histone methyltransferase(H3-K36 specific) / histone methyltransferase(H3-K4 specific)  note EARLY FLOWERING IN SHORT DAYS (EFS); FUNCTIONS IN: histone methyltransferase activity (H3-K4 specific), histone methyltransferase activity (H3-K36 specific); INVOLVED IN: positive regulation of histone methylation, carotenoid metabolic process, regulation of gene expression, epigenetic, negative regulation of flower development, secondary shoot formation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), Post-SET zinc-binding region (InterPro:IPR003616), AWS (InterPro:IPR006560), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: SDG26 (SET DOMAIN GROUP 26); histone-lysine N-methyltransferase (TAIR:AT1G76710.2); Has 4703 Blast hits to 4573 proteins in 382 species: Archae - 2; Bacteria - 447; Metazoa - 2141; Fungi - 374; Plants - 579; Viruses - 3; Other Eukaryotes - 1157 (source: NCBI BLink).  protein_id AT1G77300.2p  transcript_id AT1G77300.2  protein_id AT1G77300.2p  transcript_id AT1G77300.2  
At1g77300	chr1:029046344	0.0	C/29046344-29048810,29045949-29046153,29045194-29045366,29044996-29045075,29044734-29044865,29044534-29044650,29044310-29044402,29043620-29043697,29043439-29043495,29042646-29043366,29042507-29042562,29042200-29042276,29042015-29042097,29041831-29041910,29041513-29041592,29041142-29041187,29040160-29041032	AT1G77300.1  CDS  gene_syn CAROTENOID CHLOROPLAST REGULATORY1, CCR1, EARLY FLOWERING IN SHORT DAYS, EFS, SDG8, SET DOMAIN GROUP 8, T14N5.15, T14N5_15  gene EFS  function Encodes a protein with histone lysine N-methyltransferase activity required specifically for the trimethylation of H3-K4 in FLC chromatin (and not in H3-K36 dimethylation). Acts as an inhibitor of flowering specifically involved in the autonomous promotion pathway. EFS also regulates the expression of genes involved in carotenoid biosynthesis.Modification of histone methylation at the CRTISO locus reduces transcript levels 90%. The increased shoot branching seen in some EFS mutants is likely due to the carotenoid biosynthesis defect having an effect on stringolactones.  go_component nucleus|GO:0005634||IEA  go_process negative regulation of flower development|GO:0009910|10518493|IMP  go_process secondary shoot formation|GO:0010223|19174535|IMP  go_process carotenoid metabolic process|GO:0016116|19174535|IMP  go_process positive regulation of histone methylation|GO:0031062|16258034|IDA  go_process regulation of gene expression, epigenetic|GO:0040029|19174535|IMP  go_function histone methyltransferase activity (H3-K4 specific)|GO:0042800|16258034|IDA  go_function histone methyltransferase activity (H3-K36 specific)|GO:0046975|16258034|IDA  product EFS (EARLY FLOWERING IN SHORT DAYS); histone methyltransferase(H3-K36 specific) / histone methyltransferase(H3-K4 specific)  note EARLY FLOWERING IN SHORT DAYS (EFS); FUNCTIONS IN: histone methyltransferase activity (H3-K4 specific), histone methyltransferase activity (H3-K36 specific); INVOLVED IN: positive regulation of histone methylation, carotenoid metabolic process, regulation of gene expression, epigenetic, negative regulation of flower development, secondary shoot formation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), Post-SET zinc-binding region (InterPro:IPR003616), AWS (InterPro:IPR006560), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: SDG26 (SET DOMAIN GROUP 26); histone-lysine N-methyltransferase (TAIR:AT1G76710.2); Has 4757 Blast hits to 4627 proteins in 383 species: Archae - 2; Bacteria - 447; Metazoa - 2178; Fungi - 380; Plants - 584; Viruses - 3; Other Eukaryotes - 1163 (source: NCBI BLink).  protein_id AT1G77300.1p  transcript_id AT1G77300.1  protein_id AT1G77300.1p  transcript_id AT1G77300.1  
At1g77310	chr1:029051671	0.0	W/29051671-29051919,29052161-29052247,29052397-29052489,29052589-29052665,29053050-29053179,29053261-29053629,29053993-29054074,29054159-29054271,29054363-29054449,29054642-29054767,29055024-29055158,29055263-29055310,29055463-29055573,29055733-29056179	AT1G77310.1  CDS  gene_syn F2P24.2, F2P24_2  go_component cellular_component|GO:0005575||ND  go_process response to wounding|GO:0009611||ISS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to wounding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: wound-responsive family protein (TAIR:AT1G21610.1); Has 304 Blast hits to 291 proteins in 83 species: Archae - 0; Bacteria - 40; Metazoa - 149; Fungi - 37; Plants - 26; Viruses - 7; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT1G77310.1p  transcript_id AT1G77310.1  protein_id AT1G77310.1p  transcript_id AT1G77310.1  
At1g77320	chr1:029056740	0.0	W/29056740-29056919,29057008-29057050,29057150-29057271,29057660-29057767,29058444-29058582,29058656-29058747,29059001-29059094,29059212-29059674,29059812-29059954,29060079-29060446,29060550-29060714,29060965-29061255,29061350-29061775,29061856-29061897,29061985-29062058,29062445-29062535,29062633-29062710	AT1G77320.1  CDS  gene_syn F2P24.3, F2P24_3, MEI1, meiosis defective 1  gene MEI1  function Mutant is defective in meiosis and produces abnormal microspores. Encodes a BRCT-domain-containing protein that could be specific to the meiotic cell cycle and that plays a crucial role in some DNA repair events independent of SPO11 DSB recombination repair.  go_component intracellular|GO:0005622||IEA  go_component intracellular|GO:0005622||ISS  go_process response to DNA damage stimulus|GO:0006974|12904209|ISS  go_process reciprocal meiotic recombination|GO:0007131||TAS  go_process male meiosis|GO:0007140||IMP  go_process female meiosis|GO:0007143|12904209|IMP  go_function transcription coactivator activity|GO:0003713||ISS  product MEI1 (meiosis defective 1); transcription coactivator  note meiosis defective 1 (MEI1); FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: female meiosis, reciprocal meiotic recombination, response to DNA damage stimulus, male meiosis; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43930.2); Has 814 Blast hits to 515 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 402; Fungi - 290; Plants - 73; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT1G77320.1p  transcript_id AT1G77320.1  protein_id AT1G77320.1p  transcript_id AT1G77320.1  
At1g77330	chr1:029064346	0.0	C/29064346-29064447,29064040-29064263,29063581-29063946,29063215-29063446	AT1G77330.1  CDS  gene_syn F2P24.4, F2P24_4  function similar to 1-aminocyclopropane-1-carboxylate oxidase GI:3386565 from (Sorghum bicolor)  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative  note 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: ACO2 (ACC OXIDASE 2); 1-aminocyclopropane-1-carboxylate oxidase (TAIR:AT1G62380.1); Has 5917 Blast hits to 5900 proteins in 685 species: Archae - 0; Bacteria - 714; Metazoa - 125; Fungi - 629; Plants - 3094; Viruses - 0; Other Eukaryotes - 1355 (source: NCBI BLink).  protein_id AT1G77330.1p  transcript_id AT1G77330.1  protein_id AT1G77330.1p  transcript_id AT1G77330.1  
At1g77340	chr1:029068697	0.0	C/29068697-29069828,29068539-29068618,29068343-29068456	AT1G77340.1  CDS  gene_syn F2P24.5, F2P24_5  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G65560.1); Has 19724 Blast hits to 5542 proteins in 173 species: Archae - 5; Bacteria - 24; Metazoa - 417; Fungi - 335; Plants - 18273; Viruses - 0; Other Eukaryotes - 670 (source: NCBI BLink).  protein_id AT1G77340.1p  transcript_id AT1G77340.1  protein_id AT1G77340.1p  transcript_id AT1G77340.1  
At1g77350	chr1:029070497	0.0	W/29070497-29070655,29070824-29070875,29071270-29071336,29071455-29071545	AT1G77350.1  CDS  gene_syn F2P24.6, F2P24_6  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function KRTCAP2 (InterPro:IPR018614); Has 100 Blast hits to 100 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 77; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G77350.1p  transcript_id AT1G77350.1  protein_id AT1G77350.1p  transcript_id AT1G77350.1  
At1g77350	chr1:029070497	0.0	W/29070497-29070655,29070824-29070875,29071270-29071336,29071455-29071545	AT1G77350.2  CDS  gene_syn F2P24.6, F2P24_6  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function KRTCAP2 (InterPro:IPR018614); Has 100 Blast hits to 100 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 77; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G77350.2p  transcript_id AT1G77350.2  protein_id AT1G77350.2p  transcript_id AT1G77350.2  
At1g77360	chr1:029071983	0.0	C/29071983-29073428	AT1G77360.1  CDS  gene_syn F2P24.7, F2P24_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G71060.1); Has 17955 Blast hits to 5692 proteins in 178 species: Archae - 2; Bacteria - 12; Metazoa - 322; Fungi - 468; Plants - 16535; Viruses - 0; Other Eukaryotes - 616 (source: NCBI BLink).  protein_id AT1G77360.1p  transcript_id AT1G77360.1  protein_id AT1G77360.1p  transcript_id AT1G77360.1  
At1g77370	chr1:029073916	0.0	W/29073916-29074079,29074242-29074315,29074394-29074492,29074587-29074642	AT1G77370.1  CDS  gene_syn F2P24.8, F2P24_8  go_component endomembrane system|GO:0012505||IEA  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  go_function arsenate reductase (glutaredoxin) activity|GO:0008794||ISS  product glutaredoxin, putative  note glutaredoxin, putative; FUNCTIONS IN: electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutaredoxin active site (InterPro:IPR011767), Glutaredoxin, eukaryotic and viruses (InterPro:IPR011899), Glutaredoxin subgroup (InterPro:IPR014025), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin, putative (TAIR:AT5G20500.1); Has 4324 Blast hits to 4321 proteins in 856 species: Archae - 10; Bacteria - 1999; Metazoa - 364; Fungi - 233; Plants - 336; Viruses - 107; Other Eukaryotes - 1275 (source: NCBI BLink).  protein_id AT1G77370.1p  transcript_id AT1G77370.1  protein_id AT1G77370.1p  transcript_id AT1G77370.1  
At1g77380	chr1:029077159	0.0	C/29077159-29077252,29076775-29077008,29076597-29076690,29076276-29076490,29076043-29076182,29075593-29075951,29075201-29075495	AT1G77380.1  CDS  gene_syn AAP3, AMINO ACID PERMEASE 3, ATAAP3, F2P24.9, F2P24_9  gene AAP3  function Amino acid permease which transports basic amino acids.  go_component membrane|GO:0016020||ISS  go_process basic amino acid transport|GO:0015802|12148530|IDA  go_function amino acid transmembrane transporter activity|GO:0015171|7608199|ISS  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product AAP3; amino acid transmembrane transporter  note AAP3; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: basic amino acid transport; LOCATED IN: membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: AAP2 (AMINO ACID PERMEASE 2); amino acid transmembrane transporter (TAIR:AT5G09220.1); Has 1474 Blast hits to 1467 proteins in 163 species: Archae - 0; Bacteria - 6; Metazoa - 330; Fungi - 199; Plants - 749; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink).  protein_id AT1G77380.1p  transcript_id AT1G77380.1  protein_id AT1G77380.1p  transcript_id AT1G77380.1  
At1g77390	chr1:029083973	0.0	C/29083973-29084137,29083443-29083847,29083252-29083344,29082973-29083106,29082806-29082881,29082640-29082716,29082523-29082556,29082283-29082432,29082049-29082183,29081904-29081963	AT1G77390.1  CDS  gene_syn CYCA1, CYCA1;2, CYCLIN A1, CYCLIN A1;2, F2P24.10, F2P24_10  gene CYCA1;2  function core cell cycle genes  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase regulator activity|GO:0016538||ISS  product CYCA1;2 (CYCLIN A1;2); cyclin-dependent protein kinase regulator  note CYCLIN A1;2 (CYCA1;2); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCA1;1 (Cyclin A1;1); cyclin-dependent protein kinase regulator (TAIR:AT1G44110.1); Has 3550 Blast hits to 3546 proteins in 299 species: Archae - 0; Bacteria - 0; Metazoa - 1818; Fungi - 375; Plants - 779; Viruses - 38; Other Eukaryotes - 540 (source: NCBI BLink).  protein_id AT1G77390.1p  transcript_id AT1G77390.1  protein_id AT1G77390.1p  transcript_id AT1G77390.1  
At1g77400	chr1:029085881	0.0	W/29085881-29086579	AT1G77400.1  CDS  gene_syn F2P24.15, F2P24_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G21695.1); Has 289 Blast hits to 275 proteins in 50 species: Archae - 0; Bacteria - 12; Metazoa - 127; Fungi - 25; Plants - 67; Viruses - 10; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT1G77400.1p  transcript_id AT1G77400.1  protein_id AT1G77400.1p  transcript_id AT1G77400.1  
At1g77405	chr1:029087145	0.0	W/29087145-29088521	AT1G77405.1  CDS  gene_syn F2P24.16, F2P24_16  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: EMB2745 (EMBRYO DEFECTIVE 2745) (TAIR:AT5G39710.1); Has 13180 Blast hits to 4377 proteins in 153 species: Archae - 4; Bacteria - 12; Metazoa - 210; Fungi - 191; Plants - 12251; Viruses - 0; Other Eukaryotes - 512 (source: NCBI BLink).  protein_id AT1G77405.1p  transcript_id AT1G77405.1  protein_id AT1G77405.1p  transcript_id AT1G77405.1  
At1g77410	chr1:029092987	0.0	C/29092987-29093148,29092438-29092533,29092248-29092360,29092088-29092154,29091924-29092016,29091699-29091842,29091505-29091599,29091309-29091414,29091139-29091223,29090946-29091064,29090711-29090872,29090453-29090634,29090261-29090349,29090060-29090169,29089822-29089926,29089635-29089742,29089407-29089552,29088966-29089320,29088771-29088881	AT1G77410.1  CDS  gene_syn BGAL16, F2P24.12, F2P24_12, beta-galactosidase 16  gene BGAL16  go_component beta-galactosidase complex|GO:0009341||IEA  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process lactose catabolic process|GO:0005990||IEA  go_process lactose catabolic process, using glucoside 3-dehydrogenase|GO:0019513||IEA  go_process lactose catabolic process via UDP-galactose|GO:0019515||IEA  go_function catalytic activity|GO:0003824||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  go_function sugar binding|GO:0005529||IEA  go_function cation binding|GO:0043169||IEA  go_function beta-galactosidase activity|GO:0004565||ISS  product BGAL16 (beta-galactosidase 16); beta-galactosidase/ catalytic/ cation binding / sugar binding  note beta-galactosidase 16 (BGAL16); FUNCTIONS IN: cation binding, sugar binding, beta-galactosidase activity, catalytic activity; INVOLVED IN: lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process; LOCATED IN: endomembrane system, beta-galactosidase complex; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: MUM2 (MUCILAGE-MODIFIED 2); beta-galactosidase (TAIR:AT5G63800.1); Has 1457 Blast hits to 1301 proteins in 260 species: Archae - 13; Bacteria - 432; Metazoa - 436; Fungi - 128; Plants - 379; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT1G77410.1p  transcript_id AT1G77410.1  protein_id AT1G77410.1p  transcript_id AT1G77410.1  
At1g77420	chr1:029093641	0.0	W/29093641-29093895,29093970-29093999,29094078-29094207,29094295-29094441,29094522-29094652,29094813-29094950,29095038-29095136,29095224-29095442	AT1G77420.1  CDS  gene_syn T5M16.2, T5M16_2  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT5G16120.2); Has 2683 Blast hits to 2679 proteins in 755 species: Archae - 29; Bacteria - 1623; Metazoa - 110; Fungi - 139; Plants - 254; Viruses - 40; Other Eukaryotes - 488 (source: NCBI BLink).  protein_id AT1G77420.1p  transcript_id AT1G77420.1  protein_id AT1G77420.1p  transcript_id AT1G77420.1  
At1g77440	chr1:029096020	0.0	W/29096020-29096025,29096452-29096633,29096733-29096840,29096959-29097048,29097368-29097452,29097810-29097904,29098057-29098105	AT1G77440.2  CDS  gene_syn 20S PROTEASOME BETA SUBUNIT C 2, 20S PROTEASOME BETA SUBUNIT PBC2, PBC2, T5M16.3, T5M16_3  gene PBC2  function Encodes beta subunit of 20s proteosome complex which is involved in protein degradation.  go_function threonine-type endopeptidase activity|GO:0004298||IEA  go_component proteasome core complex|GO:0005839|9373170|TAS  go_component proteasome core complex|GO:0005839|9611183|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_function peptidase activity|GO:0008233||ISS  product PBC2; peptidase/ threonine-type endopeptidase  note PBC2; FUNCTIONS IN: peptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: PBC1 (PROTEASOME BETA SUBUNIT C1); peptidase/ threonine-type endopeptidase (TAIR:AT1G21720.1); Has 2222 Blast hits to 2222 proteins in 296 species: Archae - 254; Bacteria - 19; Metazoa - 911; Fungi - 542; Plants - 162; Viruses - 0; Other Eukaryotes - 334 (source: NCBI BLink).  protein_id AT1G77440.2p  transcript_id AT1G77440.2  protein_id AT1G77440.2p  transcript_id AT1G77440.2  
At1g77440	chr1:029096334	0.0	W/29096334-29096339,29096452-29096633,29096733-29096840,29096959-29097048,29097368-29097452,29097810-29097904,29098057-29098105	AT1G77440.1  CDS  gene_syn 20S PROTEASOME BETA SUBUNIT C 2, 20S PROTEASOME BETA SUBUNIT PBC2, PBC2, T5M16.3, T5M16_3  gene PBC2  function Encodes beta subunit of 20s proteosome complex which is involved in protein degradation.  go_function threonine-type endopeptidase activity|GO:0004298||IEA  go_component proteasome core complex|GO:0005839|9373170|TAS  go_component proteasome core complex|GO:0005839|9611183|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_function peptidase activity|GO:0008233||ISS  product PBC2; peptidase/ threonine-type endopeptidase  note PBC2; FUNCTIONS IN: peptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: PBC1 (PROTEASOME BETA SUBUNIT C1); peptidase/ threonine-type endopeptidase (TAIR:AT1G21720.1); Has 2222 Blast hits to 2222 proteins in 296 species: Archae - 254; Bacteria - 19; Metazoa - 911; Fungi - 542; Plants - 162; Viruses - 0; Other Eukaryotes - 334 (source: NCBI BLink).  protein_id AT1G77440.1p  transcript_id AT1G77440.1  protein_id AT1G77440.1p  transcript_id AT1G77440.1  
At1g77450	chr1:029100029	0.0	W/29100029-29100197,29100300-29100574,29100664-29100981	AT1G77450.1  CDS  gene_syn Arabidopsis NAC domain containing protein 32, T5M16.4, T5M16_4, anac032  gene anac032  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac032 (Arabidopsis NAC domain containing protein 32); transcription factor  note Arabidopsis NAC domain containing protein 32 (anac032); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ATAF1; transcription activator/ transcription factor (TAIR:AT1G01720.1); Has 1620 Blast hits to 1617 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1620; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G77450.1p  transcript_id AT1G77450.1  protein_id AT1G77450.1p  transcript_id AT1G77450.1  
At1g77460	chr1:029104378	0.0	W/29104378-29104439,29104532-29107598,29107970-29110517,29110640-29111094,29111188-29111304,29111419-29111580	AT1G77460.1  CDS  gene_syn T5M16.5, T5M16_5  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), Armadillo-like helical (InterPro:IPR011989), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein / armadillo/beta-catenin repeat family protein (TAIR:AT1G44120.1); Has 3174 Blast hits to 1567 proteins in 179 species: Archae - 0; Bacteria - 16; Metazoa - 890; Fungi - 394; Plants - 1568; Viruses - 0; Other Eukaryotes - 306 (source: NCBI BLink).  protein_id AT1G77460.1p  transcript_id AT1G77460.1  protein_id AT1G77460.1p  transcript_id AT1G77460.1  
At1g77470	chr1:029114137	0.0	C/29114137-29114323,29113735-29113948,29113478-29113557,29113216-29113375,29113014-29113095,29112735-29112888,29112558-29112621,29112411-29112479,29112194-29112293	AT1G77470.1  CDS  gene_syn T5M16.6, T5M16_6  go_component DNA replication factor C complex|GO:0005663||IEA  go_process DNA replication|GO:0006260||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA clamp loader activity|GO:0003689||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component DNA replication factor C complex|GO:0005663||ISS  go_function ATPase activity|GO:0016887||ISS  product replication factor C 36 kDA, putative  note replication factor C 36 kDA, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA replication; LOCATED IN: DNA replication factor C complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Replication factor C (InterPro:IPR013748), DNA polymerase III clamp loader subunit, C-terminal (InterPro:IPR008921); BEST Arabidopsis thaliana protein match is: emb1968 (embryo defective 1968); ATP binding / ATPase/ DNA binding / DNA clamp loader/ nucleoside-triphosphatase/ nucleotide binding (TAIR:AT1G21690.1); Has 11716 Blast hits to 11685 proteins in 1557 species: Archae - 434; Bacteria - 5048; Metazoa - 788; Fungi - 631; Plants - 198; Viruses - 64; Other Eukaryotes - 4553 (source: NCBI BLink).  protein_id AT1G77470.1p  transcript_id AT1G77470.1  protein_id AT1G77470.1p  transcript_id AT1G77470.1  
At1g77480	chr1:029116957	0.0	C/29116957-29117150,29116472-29116589,29116166-29116392,29115835-29116068,29115596-29115734,29115309-29115506,29115145-29115217,29114946-29115061	AT1G77480.2  CDS  gene_syn T5M16.7, T5M16_7  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  product nucellin protein, putative  note nucellin protein, putative; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: nucellin protein, putative (TAIR:AT1G44130.1); Has 1038 Blast hits to 1033 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 17; Plants - 945; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT1G77480.2p  transcript_id AT1G77480.2  protein_id AT1G77480.2p  transcript_id AT1G77480.2  
At1g77480	chr1:029116957	0.0	C/29116957-29117150,29116472-29116589,29116166-29116392,29115835-29116068,29115596-29115734,29115309-29115506,29115145-29115217,29114974-29115061,29114705-29114834	AT1G77480.1  CDS  gene_syn T5M16.7, T5M16_7  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  product nucellin protein, putative  note nucellin protein, putative; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: nucellin protein, putative (TAIR:AT1G44130.1); Has 1042 Blast hits to 1037 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 17; Plants - 945; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT1G77480.1p  transcript_id AT1G77480.1  protein_id AT1G77480.1p  transcript_id AT1G77480.1  
At1g77490	chr1:029117688	0.0	W/29117688-29117870,29117938-29118072,29118212-29118332,29118414-29118514,29118607-29118694,29118798-29118865,29118950-29119036,29119127-29119201,29119310-29119387,29119483-29119587,29119715-29119774,29119867-29120046	AT1G77490.1  CDS  gene_syn T5M16.8, T5M16_8, TAPX, THYLAKOIDAL ASCORBATE PEROXIDASE  gene TAPX  function Encodes a chloroplastic thylakoid ascorbate peroxidase tAPX. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_process response to oxidative stress|GO:0006979||IEA  go_component chloroplast thylakoid membrane|GO:0009535|11997377|ISS  go_function L-ascorbate peroxidase activity|GO:0016688|11997377|ISS  product TAPX (THYLAKOIDAL ASCORBATE PEROXIDASE); L-ascorbate peroxidase  note THYLAKOIDAL ASCORBATE PEROXIDASE (TAPX); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: response to oxidative stress; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: SAPX (STROMAL ASCORBATE PEROXIDASE); L-ascorbate peroxidase (TAIR:AT4G08390.2); Has 5708 Blast hits to 5646 proteins in 859 species: Archae - 36; Bacteria - 1634; Metazoa - 2; Fungi - 462; Plants - 2163; Viruses - 0; Other Eukaryotes - 1411 (source: NCBI BLink).  protein_id AT1G77490.1p  transcript_id AT1G77490.1  protein_id AT1G77490.1p  transcript_id AT1G77490.1  
At1g77500	chr1:029121753	0.0	W/29121753-29123226,29123585-29123793,29123908-29124131,29124205-29124937	AT1G77500.1  CDS  gene_syn T5M16.9, T5M16_9  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  product unknown protein  note unknown protein; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21740.1); Has 603 Blast hits to 479 proteins in 106 species: Archae - 0; Bacteria - 28; Metazoa - 115; Fungi - 42; Plants - 353; Viruses - 3; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT1G77500.1p  transcript_id AT1G77500.1  protein_id AT1G77500.1p  transcript_id AT1G77500.1  
At1g77510	chr1:029126742	0.0	W/29126742-29126911,29127150-29127180,29127272-29127559,29127643-29127828,29127932-29128057,29128339-29128476,29128577-29128696,29128794-29128911,29128995-29129107,29129197-29129433	AT1G77510.1  CDS  gene_syn ATPDI6, ATPDIL1-2, PDI-LIKE 1-2, PDI6, PROTEIN DISULFIDE ISOMERASE 6, T5M16.10, T5M16_10  gene ATPDIL1-2  function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). AtIRE1-2 does not appear to be required for this response, but the atbzip60 mutant has a diminished response.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process response to endoplasmic reticulum stress|GO:0034976|18574595|IEP  go_function protein disulfide isomerase activity|GO:0003756|18574595|ISS  go_function protein disulfide isomerase activity|GO:0003756||ISS  product ATPDIL1-2 (PDI-LIKE 1-2); protein disulfide isomerase  note PDI-LIKE 1-2 (ATPDIL1-2); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: response to cadmium ion, response to salt stress, response to endoplasmic reticulum stress; LOCATED IN: endoplasmic reticulum, plasma membrane, chloroplast; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Disulphide isomerase (InterPro:IPR005788), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Protein disulphide isomerase (InterPro:IPR005792), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATPDIL1-1 (PDI-LIKE 1-1); protein disulfide isomerase (TAIR:AT1G21750.1); Has 21063 Blast hits to 11727 proteins in 1702 species: Archae - 195; Bacteria - 8123; Metazoa - 4567; Fungi - 1060; Plants - 1520; Viruses - 23; Other Eukaryotes - 5575 (source: NCBI BLink).  protein_id AT1G77510.1p  transcript_id AT1G77510.1  protein_id AT1G77510.1p  transcript_id AT1G77510.1  
At1g77520	chr1:029130557	0.0	W/29130557-29131026,29131154-29131464,29131564-29131628,29131708-29132007	AT1G77520.1  CDS  gene_syn T5M16.11, T5M16_11  go_component cytosol|GO:0005829|9484457|TAS  go_process lignin biosynthetic process|GO:0009809|7770534|ISS  go_function O-methyltransferase activity|GO:0008171|7770534|ISS  product O-methyltransferase family 2 protein  note O-methyltransferase family 2 protein; FUNCTIONS IN: O-methyltransferase activity; INVOLVED IN: lignin biosynthetic process; LOCATED IN: cytosol; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family 2 protein (TAIR:AT1G77530.1); Has 2154 Blast hits to 2152 proteins in 419 species: Archae - 0; Bacteria - 624; Metazoa - 81; Fungi - 433; Plants - 927; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT1G77520.1p  transcript_id AT1G77520.1  protein_id AT1G77520.1p  transcript_id AT1G77520.1  
At1g77525	chr1:029134372	0.0	C/29134372-29134438,29134031-29134203	AT1G77525.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G77525.1p  transcript_id AT1G77525.1  protein_id AT1G77525.1p  transcript_id AT1G77525.1  
At1g77530	chr1:029136037	0.0	W/29136037-29136506,29136572-29136882,29136977-29137041,29137124-29137423	AT1G77530.1  CDS  gene_syn T5M16.12, T5M16_12  go_component cytosol|GO:0005829|9484457|TAS  go_process lignin biosynthetic process|GO:0009809|7770534|ISS  go_function O-methyltransferase activity|GO:0008171|7770534|ISS  product O-methyltransferase family 2 protein  note O-methyltransferase family 2 protein; FUNCTIONS IN: O-methyltransferase activity; INVOLVED IN: lignin biosynthetic process; LOCATED IN: cytosol; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family 2 protein (TAIR:AT1G77520.1); Has 2044 Blast hits to 2042 proteins in 413 species: Archae - 2; Bacteria - 526; Metazoa - 83; Fungi - 418; Plants - 928; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).  protein_id AT1G77530.1p  transcript_id AT1G77530.1  protein_id AT1G77530.1p  transcript_id AT1G77530.1  
At1g77540	chr1:029137910	0.0	C/29137910-29138182,29137762-29137833	AT1G77540.1  CDS  gene_syn T5M16.13, T5M16_13  function Encodes a H3/H4 histone acetyltransferase. Belongs to the GNAT family, whose many members are involved in histone acetylation and chromatin remodeling, and are important for the regulation of cell growth and development.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function H3/H4 histone acetyltransferase activity|GO:0004406|17128971|IDA  product H3/H4 histone acetyltransferase  note H3/H4 histone acetyltransferase; FUNCTIONS IN: H3/H4 histone acetyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21770.1); Has 179 Blast hits to 179 proteins in 87 species: Archae - 2; Bacteria - 139; Metazoa - 6; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G77540.1p  transcript_id AT1G77540.1  protein_id AT1G77540.1p  transcript_id AT1G77540.1  
At1g77550	chr1:029142699	0.0	C/29142699-29142965,29142381-29142611,29142129-29142253,29141831-29142044,29141560-29141685,29141194-29141450,29140589-29140696,29140252-29140393,29139976-29140141,29139681-29139838,29139276-29139599,29139119-29139193,29138965-29139034,29138727-29138884,29138490-29138636	AT1G77550.1  CDS  gene_syn T5M16.14, T5M16_14  go_component chloroplast|GO:0009507|15028209|IDA  go_process protein modification process|GO:0006464||IEA  go_function tubulin-tyrosine ligase activity|GO:0004835||IEA  go_process protein modification process|GO:0006464||ISS  go_function tubulin-tyrosine ligase activity|GO:0004835||ISS  go_function protein binding|GO:0005515||ISS  product protein binding / tubulin-tyrosine ligase  note protein binding / tubulin-tyrosine ligase; FUNCTIONS IN: protein binding, tubulin-tyrosine ligase activity; INVOLVED IN: protein modification process; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Tubulin-tyrosine ligase (InterPro:IPR004344); Has 1667 Blast hits to 1575 proteins in 108 species: Archae - 0; Bacteria - 4; Metazoa - 1054; Fungi - 20; Plants - 33; Viruses - 0; Other Eukaryotes - 556 (source: NCBI BLink).  protein_id AT1G77550.1p  transcript_id AT1G77550.1  protein_id AT1G77550.1p  transcript_id AT1G77550.1  
At1g77560	chr1:029143090	0.0	C/29143090-29143161	AT1G77560.1  tRNA  gene_syn 60085.TRNA-GLN-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gln (anticodon: TTG)  transcript_id AT1G77560.1  
At1g77570	chr1:029143350	0.0	W/29143350-29143793	AT1G77570.1  CDS  gene_syn T5M16.16, T5M16_16  go_component nucleus|GO:0005634||IEA  go_component endomembrane system|GO:0012505||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product DNA binding / transcription factor  note DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: AT-HSFA5; DNA binding / transcription factor (TAIR:AT4G13980.1); Has 823 Blast hits to 820 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 209; Fungi - 72; Plants - 425; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT1G77570.1p  transcript_id AT1G77570.1  protein_id AT1G77570.1p  transcript_id AT1G77570.1  
At1g77580	chr1:029146417	0.0	C/29146417-29146600,29144632-29146337	AT1G77580.1  CDS  gene_syn T5M16.17, T5M16_17  product myosin heavy chain-related  note myosin heavy chain-related; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869, plant (InterPro:IPR008587); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21810.1); Has 138948 Blast hits to 65578 proteins in 2174 species: Archae - 1714; Bacteria - 19447; Metazoa - 67171; Fungi - 10395; Plants - 5931; Viruses - 651; Other Eukaryotes - 33639 (source: NCBI BLink).  protein_id AT1G77580.1p  transcript_id AT1G77580.1  protein_id AT1G77580.1p  transcript_id AT1G77580.1  
At1g77580	chr1:029146704	0.0	C/29146704-29146793,29146417-29146612,29144662-29146337,29144191-29144568	AT1G77580.2  CDS  gene_syn T5M16.17, T5M16_17  product myosin heavy chain-related  note myosin heavy chain-related; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869, plant (InterPro:IPR008587); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21810.1); Has 145274 Blast hits to 69466 proteins in 2235 species: Archae - 1762; Bacteria - 20678; Metazoa - 69566; Fungi - 10834; Plants - 6210; Viruses - 727; Other Eukaryotes - 35497 (source: NCBI BLink).  protein_id AT1G77580.2p  transcript_id AT1G77580.2  protein_id AT1G77580.2p  transcript_id AT1G77580.2  
At1g77590	chr1:029151330	0.0	C/29151330-29151776,29151145-29151225,29150678-29150932,29150395-29150526,29150134-29150307,29149712-29149941,29149497-29149614,29149263-29149394,29149035-29149169,29148740-29148946,29148501-29148665	AT1G77590.1  CDS  gene_syn LACS9, LONG CHAIN ACYL-COA SYNTHETASE 9, T5M16.18, T5M16_18  gene LACS9  function Encodes major plastidic long chain acyl-CoA synthetase with a slight substrate preference of oleic acid over any of the other fatty acids.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component chloroplast|GO:0009507|12177483|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process fatty acid metabolic process|GO:0006631|12177484|TAS  go_process fatty acid biosynthetic process|GO:0006633||ISS  go_function long-chain-fatty-acid-CoA ligase activity|GO:0004467|12177484|IDA  go_function long-chain-fatty-acid-CoA ligase activity|GO:0004467||ISS  product LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9); long-chain-fatty-acid-CoA ligase  note LONG CHAIN ACYL-COA SYNTHETASE 9 (LACS9); FUNCTIONS IN: long-chain-fatty-acid-CoA ligase activity; INVOLVED IN: fatty acid metabolic process, fatty acid biosynthetic process; LOCATED IN: mitochondrion, chloroplast, plastid, membrane, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8) (TAIR:AT2G04350.2); Has 44295 Blast hits to 37661 proteins in 2130 species: Archae - 553; Bacteria - 25926; Metazoa - 2537; Fungi - 2189; Plants - 1209; Viruses - 2; Other Eukaryotes - 11879 (source: NCBI BLink).  protein_id AT1G77590.1p  transcript_id AT1G77590.1  protein_id AT1G77590.1p  transcript_id AT1G77590.1  
At1g77600	chr1:029162061	0.0	C/29162061-29162156,29161482-29161706,29161216-29161397,29160927-29161113,29160624-29160845,29160226-29160451,29159985-29160130,29159731-29159888,29159496-29159645,29159377-29159425,29159084-29159272,29158728-29158907,29158347-29158486,29157966-29158092,29157530-29157667,29157362-29157430,29156845-29156975,29156554-29156698,29155721-29155914,29155505-29155643,29155285-29155422,29155116-29155202,29154687-29155004,29154542-29154609,29154415-29154466,29153865-29153951,29153706-29153749,29153438-29153544,29153070-29153143,29152890-29152925	AT1G77600.1  CDS  gene_syn T5M16.19, T5M16_19  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT5G47690.3); Has 420 Blast hits to 371 proteins in 114 species: Archae - 0; Bacteria - 2; Metazoa - 153; Fungi - 83; Plants - 153; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G77600.1p  transcript_id AT1G77600.1  protein_id AT1G77600.1p  transcript_id AT1G77600.1  
At1g77610	chr1:029165489	0.0	W/29165489-29165584,29165738-29165987,29166074-29166281,29166638-29166869,29167262-29167486	AT1G77610.1  CDS  gene_syn T5M16.20, T5M16_20  go_component membrane|GO:0016020||IEA  go_function organic anion transmembrane transporter activity|GO:0008514||ISS  product glucose-6-phosphate/phosphate translocator-related  note glucose-6-phosphate/phosphate translocator-related; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: glucose-6-phosphate/phosphate translocator-related (TAIR:AT1G21870.1); Has 2359 Blast hits to 2354 proteins in 257 species: Archae - 2; Bacteria - 87; Metazoa - 622; Fungi - 366; Plants - 920; Viruses - 0; Other Eukaryotes - 362 (source: NCBI BLink).  protein_id AT1G77610.1p  transcript_id AT1G77610.1  protein_id AT1G77610.1p  transcript_id AT1G77610.1  
At1g77620	chr1:029172670	0.0	C/29172670-29172867,29172434-29172580,29172175-29172342,29171801-29172094,29171615-29171709,29171441-29171510,29171127-29171339,29170970-29171029,29170783-29170862,29170455-29170675,29170266-29170357,29170075-29170201,29168782-29169950,29168418-29168686,29168104-29168262,29167934-29168027	AT1G77620.1  CDS  gene_syn T5M16.21, T5M16_21  go_component nucleus|GO:0005634||IEA  go_process DNA repair|GO:0006281||IEA  go_process cell cycle|GO:0007049||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  product nucleoside-triphosphatase/ nucleotide binding  note nucleoside-triphosphatase/ nucleotide binding; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding; INVOLVED IN: DNA repair, cell cycle; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Checkpoint protein Rad24 (InterPro:IPR004582), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: AtRFC1 (replication factor C 1); ATP binding / DNA binding / DNA clamp loader/ nucleoside-triphosphatase/ nucleotide binding (TAIR:AT5G22010.1); Has 1115 Blast hits to 1076 proteins in 229 species: Archae - 181; Bacteria - 0; Metazoa - 322; Fungi - 276; Plants - 73; Viruses - 9; Other Eukaryotes - 254 (source: NCBI BLink).  protein_id AT1G77620.1p  transcript_id AT1G77620.1  protein_id AT1G77620.1p  transcript_id AT1G77620.1  
At1g77630	chr1:029173726	0.0	W/29173726-29174383,29174520-29174637,29174709-29174870,29174964-29174995,29175086-29175387	AT1G77630.1  CDS  gene_syn T5M16.22, T5M16_22  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_process cell wall macromolecule catabolic process|GO:0016998||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process cell wall macromolecule catabolic process|GO:0016998||ISS  product peptidoglycan-binding LysM domain-containing protein  note peptidoglycan-binding LysM domain-containing protein; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482); BEST Arabidopsis thaliana protein match is: LYM1 (LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR) (TAIR:AT1G21880.2); Has 278 Blast hits to 269 proteins in 41 species: Archae - 0; Bacteria - 41; Metazoa - 4; Fungi - 2; Plants - 218; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G77630.1p  transcript_id AT1G77630.1  protein_id AT1G77630.1p  transcript_id AT1G77630.1  
At1g77640	chr1:029178796	0.0	W/29178796-29179530	AT1G77640.1  CDS  gene_syn T5M16.23, T5M16_23  function encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor family protein (TAIR:AT1G21910.1); Has 3459 Blast hits to 3447 proteins in 186 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 2; Plants - 3450; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G77640.1p  transcript_id AT1G77640.1  protein_id AT1G77640.1p  transcript_id AT1G77640.1  
At1g77650	chr1:029181110	0.0	W/29181110-29182261	AT1G77650.1  CDS  gene_syn T5M16.24, T5M16_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: CEG (CEGENDUO) (TAIR:AT3G22650.1); Has 580 Blast hits to 568 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 578; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G77650.1p  transcript_id AT1G77650.1  protein_id AT1G77650.1p  transcript_id AT1G77650.1  
At1g77655	chr1:029182736	0.0	C/29182736-29183026	AT1G77655.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G77655.1p  transcript_id AT1G77655.1  protein_id AT1G77655.1p  transcript_id AT1G77655.1  
At1g77660	chr1:029186623	0.0	C/29186623-29187500,29186319-29186547,29186073-29186231	AT1G77660.1  CDS  gene_syn T5M16.25, T5M16_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related  note MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: MORN motif (InterPro:IPR003409); BEST Arabidopsis thaliana protein match is: MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related (TAIR:AT1G21920.1); Has 20761 Blast hits to 5342 proteins in 347 species: Archae - 0; Bacteria - 1953; Metazoa - 3549; Fungi - 103; Plants - 693; Viruses - 0; Other Eukaryotes - 14463 (source: NCBI BLink).  protein_id AT1G77660.1p  transcript_id AT1G77660.1  protein_id AT1G77660.1p  transcript_id AT1G77660.1  
At1g77670	chr1:029190734	0.0	C/29190734-29190901,29189043-29190197	AT1G77670.1  CDS  gene_syn T5M16.26, T5M16_26  go_process asparagine catabolic process|GO:0006530||IEA  go_process biosynthetic process|GO:0009058||IEA  go_process aspartate transamidation|GO:0019465||IEA  go_process glutamate catabolic process to oxaloacetate|GO:0019554||IEA  go_function catalytic activity|GO:0003824||IEA  go_function transferase activity, transferring nitrogenous groups|GO:0016769||IEA  go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_function transaminase activity|GO:0008483||ISS  product aminotransferase class I and II family protein  note aminotransferase class I and II family protein; FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate synthase activity, transferase activity, transferring nitrogenous groups, pyridoxal phosphate binding, transaminase activity, catalytic activity; INVOLVED IN: asparagine catabolic process, biosynthetic process, glutamate catabolic process to oxaloacetate, aspartate transamidation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: aminotransferase class I and II family protein (TAIR:AT2G22250.3); Has 31276 Blast hits to 31274 proteins in 1793 species: Archae - 712; Bacteria - 18280; Metazoa - 666; Fungi - 553; Plants - 905; Viruses - 0; Other Eukaryotes - 10160 (source: NCBI BLink).  protein_id AT1G77670.1p  transcript_id AT1G77670.1  protein_id AT1G77670.1p  transcript_id AT1G77670.1  
At1g77680	chr1:029195858	0.0	C/29195858-29195963,29195319-29195698,29195167-29195220,29195024-29195092,29192797-29194923,29192641-29192712,29192188-29192547	AT1G77680.1  CDS  go_component chloroplast|GO:0009507||IEA  go_function RNA binding|GO:0003723||IEA  go_function ribonuclease activity|GO:0004540||IEA  go_function RNA binding|GO:0003723||ISS  go_function ribonuclease activity|GO:0004540||ISS  product ribonuclease II family protein  note ribonuclease II family protein; FUNCTIONS IN: ribonuclease activity, RNA binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease II and R (InterPro:IPR001900); BEST Arabidopsis thaliana protein match is: EMB2763 (EMBRYO DEFECTIVE 2763); RNA binding / ribonuclease (TAIR:AT2G17510.1); Has 5420 Blast hits to 5286 proteins in 1284 species: Archae - 27; Bacteria - 2951; Metazoa - 424; Fungi - 261; Plants - 62; Viruses - 2; Other Eukaryotes - 1693 (source: NCBI BLink).  protein_id AT1G77680.1p  transcript_id AT1G77680.1  protein_id AT1G77680.1p  transcript_id AT1G77680.1  
At1g77682	chr1:029196708	0.0	C/29196708-29197025	AT1G77682.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G77682.1p  transcript_id AT1G77682.1  protein_id AT1G77682.1p  transcript_id AT1G77682.1  
At1g77690	chr1:029203147	0.0	C/29203147-29203317,29202879-29203064,29202663-29202775,29202396-29202579,29202198-29202295,29201643-29202108,29201232-29201426	AT1G77690.1  CDS  gene_syn LAX3, LIKE AUX1 3, T32E8.2, T32E8_2  gene LAX3  function Encodes an auxin influx carrier LAX3 (Like Aux1) that promotes lateral root emergence. Auxin-induced expression of LAX3 in turn induces a selection of cell-wall-remodelling enzymes, which are likely to promote cell separation in advance of developing lateral root primordia.  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_process response to auxin stimulus|GO:0009733|18622388|IDA  go_process auxin polar transport|GO:0009926|18622388|IDA  go_process lateral root formation|GO:0010311|18622388|IGI  go_function transporter activity|GO:0005215||ISS  go_function auxin influx transmembrane transporter activity|GO:0010328|18622388|IDA  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product LAX3 (LIKE AUX1 3); amino acid transmembrane transporter/ auxin influx transmembrane transporter/ transporter  note LIKE AUX1 3 (LAX3); FUNCTIONS IN: auxin influx transmembrane transporter activity, amino acid transmembrane transporter activity, transporter activity; INVOLVED IN: response to auxin stimulus, amino acid transport, lateral root formation, auxin polar transport; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid permease, putative (TAIR:AT2G21050.1); Has 745 Blast hits to 741 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 150; Fungi - 197; Plants - 375; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G77690.1p  transcript_id AT1G77690.1  protein_id AT1G77690.1p  transcript_id AT1G77690.1  
At1g77700	chr1:029204747	0.0	W/29204747-29204822,29205148-29205271,29205347-29206217	AT1G77700.1  CDS  gene_syn T32E8.3, T32E8_3  go_component cellular_component|GO:0005575||ND  go_process response to other organism|GO:0051707||ISS  go_function molecular_function|GO:0003674||ND  product pathogenesis-related thaumatin family protein  note pathogenesis-related thaumatin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: ATLP-3 (TAIR:AT1G75030.1); Has 1056 Blast hits to 1039 proteins in 143 species: Archae - 0; Bacteria - 24; Metazoa - 47; Fungi - 53; Plants - 923; Viruses - 2; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G77700.1p  transcript_id AT1G77700.1  protein_id AT1G77700.1p  transcript_id AT1G77700.1  
At1g77710	chr1:029206750	0.0	W/29206750-29206817,29206894-29206991,29207422-29207454,29207813-29207895	AT1G77710.1  CDS  gene_syn T32E8.4, T32E8_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-like, Ufm1 (InterPro:IPR005375); Has 170 Blast hits to 170 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT1G77710.1p  transcript_id AT1G77710.1  protein_id AT1G77710.1p  transcript_id AT1G77710.1  
At1g77720	chr1:029210730	0.0	W/29210730-29210895,29211221-29211559,29211699-29212591,29212711-29212911,29213025-29213186,29213305-29213877	AT1G77720.1  CDS  gene_syn T32E8.5, T32E8_5  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: MAPKKK10; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT4G08470.1); Has 75520 Blast hits to 72645 proteins in 2264 species: Archae - 40; Bacteria - 7012; Metazoa - 30580; Fungi - 7836; Plants - 13115; Viruses - 208; Other Eukaryotes - 16729 (source: NCBI BLink).  protein_id AT1G77720.1p  transcript_id AT1G77720.1  protein_id AT1G77720.1p  transcript_id AT1G77720.1  
At1g77730	chr1:029214445	0.0	W/29214445-29214846,29215169-29215564	AT1G77730.1  CDS  gene_syn T32E8.6, T32E8_6  go_component chloroplast|GO:0009507||IEA  go_process signal transduction|GO:0007165|15358268|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product pleckstrin homology (PH) domain-containing protein  note pleckstrin homology (PH) domain-containing protein; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: chloroplast; EXPRESSED IN: sperm cell, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Oxysterol-binding protein (InterPro:IPR000648), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: ORP1C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1C); oxysterol binding / phosphoinositide binding (TAIR:AT4G08180.3); Has 565 Blast hits to 564 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 407; Fungi - 65; Plants - 62; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT1G77730.1p  transcript_id AT1G77730.1  protein_id AT1G77730.1p  transcript_id AT1G77730.1  
At1g77740	chr1:029220632	0.0	W/29220632-29221734,29221817-29221981,29222096-29222261,29222418-29222528,29222610-29222803,29222898-29223028,29223112-29223205,29223561-29223861	AT1G77740.1  CDS  go_process phosphatidylinositol metabolic process|GO:0046488||IEA  go_function ATP binding|GO:0005524||IEA  go_function phosphatidylinositol phosphate kinase activity|GO:0016307||IEA  go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308||IEA  go_component cellular_component|GO:0005575||ND  go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308||ISS  product 1-phosphatidylinositol-4-phosphate 5-kinase, putative / PIP kinase, putative / PtdIns(4)P-5-kinase, putative / diphosphoinositide kinase, putative  note 1-phosphatidylinositol-4-phosphate 5-kinase, putative / PIP kinase, putative / PtdIns(4)P-5-kinase, putative / diphosphoinositide kinase, putative; FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding; INVOLVED IN: phosphatidylinositol metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, plant (InterPro:IPR017163), MORN motif (InterPro:IPR003409), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: ATPIP5K1 (PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 1); 1-phosphatidylinositol-4-phosphate 5-kinase/ actin filament binding / actin monomer binding / phosphatidylinositol phosphate kinase (TAIR:AT1G21980.1); Has 23159 Blast hits to 6357 proteins in 384 species: Archae - 0; Bacteria - 2480; Metazoa - 3570; Fungi - 293; Plants - 660; Viruses - 0; Other Eukaryotes - 16156 (source: NCBI BLink).  protein_id AT1G77740.1p  transcript_id AT1G77740.1  protein_id AT1G77740.1p  transcript_id AT1G77740.1  
At1g77746	chr1:029227915	0.0	W/29227915-29228088	AT1G77746.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G77746.1p  transcript_id AT1G77746.1  protein_id AT1G77746.1p  transcript_id AT1G77746.1  
At1g77750	chr1:029231422	0.0	C/29231422-29231490,29230610-29230834,29230346-29230516	AT1G77750.1  CDS  gene_syn RPS13, T32E8.8, T32E8_8  go_process translation|GO:0006412||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component mitochondrion|GO:0005739|11971146|IDA  go_component mitochondrial small ribosomal subunit|GO:0005763|11971146|TAS  go_component chloroplast|GO:0009507|11971146|IDA  go_component small ribosomal subunit|GO:0015935||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 30S ribosomal protein S13, chloroplast, putative  note 30S ribosomal protein S13, chloroplast, putative; FUNCTIONS IN: structural constituent of ribosome, RNA binding, nucleic acid binding; INVOLVED IN: translation; LOCATED IN: mitochondrion, small ribosomal subunit, chloroplast, mitochondrial small ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13, conserved site (InterPro:IPR018269), Ribosomal protein S13-like, H2TH (InterPro:IPR010979), Ribosomal protein S13 (InterPro:IPR001892); BEST Arabidopsis thaliana protein match is: 30S ribosomal protein S13, chloroplast (CS13) (TAIR:AT5G14320.1); Has 5725 Blast hits to 5725 proteins in 1762 species: Archae - 116; Bacteria - 2963; Metazoa - 147; Fungi - 105; Plants - 348; Viruses - 0; Other Eukaryotes - 2046 (source: NCBI BLink).  protein_id AT1G77750.1p  transcript_id AT1G77750.1  protein_id AT1G77750.1p  transcript_id AT1G77750.1  
At1g77760	chr1:029238314	0.0	C/29238314-29239367,29238095-29238235,29237770-29238002,29236005-29237330	AT1G77760.1  CDS  gene_syn GNR1, NIA1, NITRATE REDUCTASE, NITRATE REDUCTASE 1, NR1, T32E8.9, T32E8_9  gene NIA1  function Encodes the cytosolic minor isoform of nitrate reductase (NR). Involved in the first step of nitrate assimilation, it contributes about 15% of the nitrate reductase activity in shoots. Similar to molybdopterin oxidoreductases at the N-terminus, and to FAD/NAD-binding cytochrome reductases at the C-terminus. Cofactors: FAD, heme iron (cytochrome B-557), and molybdenum-pterin.  go_component cytosol|GO:0005829|15012211|TAS  go_process nitric oxide biosynthetic process|GO:0006809|12446847|IMP  go_process response to light stimulus|GO:0009416|15908593|IMP  go_process nitrate assimilation|GO:0042128|8510658|IMP  go_function nitrate reductase activity|GO:0008940|8510658|IMP  product NIA1 (NITRATE REDUCTASE 1); nitrate reductase  note NITRATE REDUCTASE 1 (NIA1); FUNCTIONS IN: nitrate reductase activity; INVOLVED IN: nitrate assimilation, nitric oxide biosynthetic process, response to light stimulus; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b5, heme-binding site (InterPro:IPR018506), Nitrate reductase NADH dependant (InterPro:IPR012137), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase FAD-binding region (InterPro:IPR008333), Immunoglobulin E-set (InterPro:IPR014756), Cytochrome b5 (InterPro:IPR001199), NADH:cytochrome b5 reductase (CBR) (InterPro:IPR001834), Oxidoreductase, molybdopterin binding (InterPro:IPR000572), Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Eukaryotic molybdopterin oxidoreductase (InterPro:IPR008335), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), Moybdenum cofactor oxidoreductase, dimerisation (InterPro:IPR005066); BEST Arabidopsis thaliana protein match is: NIA2 (NITRATE REDUCTASE 2); nitrate reductase (NADH)/ nitrate reductase (TAIR:AT1G37130.1); Has 9896 Blast hits to 9602 proteins in 1379 species: Archae - 79; Bacteria - 4278; Metazoa - 1488; Fungi - 1420; Plants - 787; Viruses - 3; Other Eukaryotes - 1841 (source: NCBI BLink).  protein_id AT1G77760.1p  transcript_id AT1G77760.1  protein_id AT1G77760.1p  transcript_id AT1G77760.1  
At1g77765	chr1:029245081	0.0	W/29245081-29245374,29245726-29245887,29245966-29246031	AT1G77765.3  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G77765.3p  transcript_id AT1G77765.3  protein_id AT1G77765.3p  transcript_id AT1G77765.3  
At1g77765	chr1:029245081	0.0	W/29245081-29245374,29245726-29245959	AT1G77765.4  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G77765.4p  transcript_id AT1G77765.4  protein_id AT1G77765.4p  transcript_id AT1G77765.4  
At1g77765	chr1:029245081	0.0	W/29245081-29245374,29245729-29245887,29245966-29246031	AT1G77765.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G77765.2p  transcript_id AT1G77765.2  protein_id AT1G77765.2p  transcript_id AT1G77765.2  
At1g77765	chr1:029245081	0.0	W/29245081-29245374,29245729-29245959	AT1G77765.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G77765.1p  transcript_id AT1G77765.1  protein_id AT1G77765.1p  transcript_id AT1G77765.1  
At1g77770	chr1:029246481	0.0	C/29246481-29247275	AT1G77770.2  CDS  gene_syn T32E8.10, T32E8_10  go_component intracellular|GO:0005622||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, RING-type (InterPro:IPR001841), Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G08460.2); Has 156 Blast hits to 147 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G77770.2p  transcript_id AT1G77770.2  protein_id AT1G77770.2p  transcript_id AT1G77770.2  
At1g77770	chr1:029246489	0.0	C/29246489-29247275,29246380-29246390	AT1G77770.1  CDS  gene_syn T32E8.10, T32E8_10  go_component intracellular|GO:0005622||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, RING-type (InterPro:IPR001841), Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G08460.2); Has 156 Blast hits to 147 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G77770.1p  transcript_id AT1G77770.1  protein_id AT1G77770.1p  transcript_id AT1G77770.1  
At1g77780	chr1:029248437	0.0	C/29248437-29249528	AT1G77780.1  CDS  gene_syn T32E8.11, T32E8_11  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to membrane; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT1G77790.1); Has 1369 Blast hits to 1360 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 1362; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G77780.1p  transcript_id AT1G77780.1  protein_id AT1G77780.1p  transcript_id AT1G77780.1  
At1g77790	chr1:029251907	0.0	C/29251907-29251976,29250692-29251662	AT1G77790.1  CDS  gene_syn T32E8.12, T32E8_12  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, root; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT1G77780.1); Has 1364 Blast hits to 1355 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 1; Plants - 1360; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G77790.1p  transcript_id AT1G77790.1  protein_id AT1G77790.1p  transcript_id AT1G77790.1  
At1g77800	chr1:029253800	0.0	W/29253800-29255048,29255385-29255470,29255571-29255891,29255963-29256046,29256138-29256515,29256737-29256794,29256950-29257082,29257184-29257314,29257379-29257549,29257645-29257892,29257990-29258202,29258313-29258519,29258616-29258669,29258756-29258821,29258925-29259056,29259142-29259213,29259310-29259369,29259464-29259865,29259984-29260190	AT1G77800.1  CDS  gene_syn T32E8.13, T32E8_13  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product PHD finger family protein  note PHD finger family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: ATX1 (ARABIDOPSIS HOMOLOGUE OF TRITHORAX); histone-lysine N-methyltransferase/ phosphatidylinositol-5-phosphate binding (TAIR:AT2G31650.1); Has 2544 Blast hits to 1383 proteins in 151 species: Archae - 0; Bacteria - 2; Metazoa - 1640; Fungi - 401; Plants - 246; Viruses - 0; Other Eukaryotes - 255 (source: NCBI BLink).  protein_id AT1G77800.1p  transcript_id AT1G77800.1  protein_id AT1G77800.1p  transcript_id AT1G77800.1  
At1g77810	chr1:029262907	0.0	C/29262907-29263001,29262660-29262759,29262482-29262540,29262210-29262379,29262071-29262134,29261902-29261974,29261704-29261824,29261538-29261625,29261325-29261450,29261137-29261246,29260899-29261047	AT1G77810.2  CDS  gene_syn T32E8.14  go_process protein amino acid glycosylation|GO:0006486||IEA  go_component Golgi apparatus|GO:0005794|18548197|IDA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function beta-1,3-galactosyltransferase activity|GO:0048531|18548197|IDA  product galactosyltransferase family protein  note galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, beta-1,3-galactosyltransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: Golgi apparatus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: DD46; galactosyltransferase/ transferase, transferring hexosyl groups (TAIR:AT1G22015.1); Has 1047 Blast hits to 1042 proteins in 78 species: Archae - 0; Bacteria - 2; Metazoa - 752; Fungi - 0; Plants - 280; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G77810.2p  transcript_id AT1G77810.2  protein_id AT1G77810.2p  transcript_id AT1G77810.2  
At1g77810	chr1:029262907	0.0	C/29262907-29263001,29262660-29262759,29262482-29262540,29262210-29262388,29262071-29262134,29261902-29261974,29261704-29261824,29261538-29261625,29261325-29261468,29261137-29261246,29260899-29261047	AT1G77810.1  CDS  gene_syn T32E8.14  go_process protein amino acid glycosylation|GO:0006486||IEA  go_component Golgi apparatus|GO:0005794|18548197|IDA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function beta-1,3-galactosyltransferase activity|GO:0048531|18548197|IDA  product galactosyltransferase family protein  note galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, beta-1,3-galactosyltransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: Golgi apparatus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: DD46; galactosyltransferase/ transferase, transferring hexosyl groups (TAIR:AT1G22015.1); Has 1001 Blast hits to 996 proteins in 75 species: Archae - 0; Bacteria - 2; Metazoa - 709; Fungi - 0; Plants - 279; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G77810.1p  transcript_id AT1G77810.1  protein_id AT1G77810.1p  transcript_id AT1G77810.1  
At1g77815	chr1:029263348	0.0	C/29263348-29263650	AT1G77815.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT1G27870.1); Has 42 Blast hits to 42 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G77815.1p  transcript_id AT1G77815.1  protein_id AT1G77815.1p  transcript_id AT1G77815.1  
At1g77820	chr1:029263663	0.0	W/29263663-29264268	AT1G77820.1  mRNA_TE_gene  pseudo  gene_syn T32E8.17  note Transposable element gene, pseudogene, endonuclease/exonuclease/phosphatase family protein, contains similarity to reverse transcriptase GI:976278 from (Arabidopsis thaliana); contains Pfam profile PF03372: Endonuclease/Exonuclease/phosphatase family; blastp match of 39% identity and 1.1e-20 P-value to GP|10140689|gb|AAG13524.1|AC068924_29|AC068924 putative non-LTR retroelement reverse transcriptase {Oryza sativa (japonica cultivar-group)}  
At1g77830	chr1:029267451	0.0	C/29267451-29267752,29267160-29267415	AT1G77830.1  CDS  gene_syn T32E8.18  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); Has 497 Blast hits to 497 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 174; Fungi - 6; Plants - 243; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT1G77830.1p  transcript_id AT1G77830.1  protein_id AT1G77830.1p  transcript_id AT1G77830.1  
At1g77840	chr1:029269087	0.0	W/29269087-29270400	AT1G77840.1  CDS  gene_syn T32E8.15  go_process translational initiation|GO:0006413||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_function binding|GO:0005488||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process regulation of translational initiation|GO:0006446||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product eukaryotic translation initiation factor 5, putative / eIF-5, putative  note eukaryotic translation initiation factor 5, putative / eIF-5, putative; FUNCTIONS IN: binding, translation initiation factor activity; INVOLVED IN: translational initiation, regulation of translational initiation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF2/IF5, N-terminal (InterPro:IPR016189), Translation initiation factor IF2/IF5, zinc-binding (InterPro:IPR016190), eIF4-gamma/eIF5/eIF2-epsilon (InterPro:IPR003307), Translation initiation factor IF2/IF5 (InterPro:IPR002735), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 5, putative / eIF-5, putative (TAIR:AT1G36730.1); Has 4104 Blast hits to 3329 proteins in 352 species: Archae - 127; Bacteria - 173; Metazoa - 1572; Fungi - 548; Plants - 247; Viruses - 8; Other Eukaryotes - 1429 (source: NCBI BLink).  protein_id AT1G77840.1p  transcript_id AT1G77840.1  protein_id AT1G77840.1p  transcript_id AT1G77840.1  
At1g77850	chr1:029272405	0.0	W/29272405-29273472,29273941-29274625,29275189-29275193	AT1G77850.1  CDS  gene_syn ARF17, AUXIN RESPONSE FACTOR 17, F28K19.6, F28K19_6  gene ARF17  function Posttranscriptionally regulated by miR160 and is essential for proper development.Regulates early auxin response genes.  go_component nucleus|GO:0005634||IEA  go_process anatomical structure morphogenesis|GO:0009653|15829600|IMP  go_process auxin mediated signaling pathway|GO:0009734|15829600|TAS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process adventitious root development|GO:0048830|15829601|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product ARF17 (AUXIN RESPONSE FACTOR 17); transcription factor  note AUXIN RESPONSE FACTOR 17 (ARF17); FUNCTIONS IN: transcription factor activity; INVOLVED IN: anatomical structure morphogenesis, auxin mediated signaling pathway, adventitious root development, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: ARF10 (AUXIN RESPONSE FACTOR 10); miRNA binding / transcription factor (TAIR:AT2G28350.1); Has 685 Blast hits to 674 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 679; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G77850.1p  transcript_id AT1G77850.1  protein_id AT1G77850.1p  transcript_id AT1G77850.1  
At1g77855	chr1:029278020	0.0	C/29278020-29278388,29277244-29277828	AT1G77855.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22030.1); Has 77 Blast hits to 77 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G77855.1p  transcript_id AT1G77855.1  protein_id AT1G77855.1p  transcript_id AT1G77855.1  
At1g77860	chr1:029284148	0.0	C/29284148-29284458,29283497-29283660,29283237-29283400,29282882-29283150,29282643-29282790	AT1G77860.1  CDS  gene_syn F28K19.7, F28K19_7, KOM, KOMPEITO  gene KOM  function mutant has Altered morphology of pollen exine wall; Seven-Path Transmembrane Protein  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  product KOM (KOMPEITO)  note KOMPEITO (KOM); INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: ATRBL3 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 3) (TAIR:AT5G07250.1); Has 3212 Blast hits to 3212 proteins in 851 species: Archae - 62; Bacteria - 1618; Metazoa - 440; Fungi - 72; Plants - 170; Viruses - 0; Other Eukaryotes - 850 (source: NCBI BLink).  protein_id AT1G77860.1p  transcript_id AT1G77860.1  protein_id AT1G77860.1p  transcript_id AT1G77860.1  
At1g77870	chr1:029285177	0.0	W/29285177-29285306,29285385-29285561,29285659-29285714	AT1G77870.1  CDS  gene_syn F28K19.8, F28K19_8, MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 5 PRECURSOR, MUB5  gene MUB5  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product MUB5 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 5 PRECURSOR)  note MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 5 PRECURSOR (MUB5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Membrane-anchored ubiquitin-fold protein, HCG-1 (InterPro:IPR017000), Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: MUB6 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 6 PRECURSOR) (TAIR:AT1G22050.1); Has 96 Blast hits to 96 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G77870.1p  transcript_id AT1G77870.1  protein_id AT1G77870.1p  transcript_id AT1G77870.1  
At1g77880	chr1:029286675	0.0	C/29286675-29287067	AT1G77880.1  CDS  gene_syn F28K19.9, F28K19_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G11750.1); Has 497 Blast hits to 489 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 497; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G77880.1p  transcript_id AT1G77880.1  protein_id AT1G77880.1p  transcript_id AT1G77880.1  
At1g77880	chr1:029287014	0.0	C/29287014-29287067,29286083-29286163	AT1G77880.2  CDS  gene_syn F28K19.9, F28K19_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT1G77880.2p  transcript_id AT1G77880.2  protein_id AT1G77880.2p  transcript_id AT1G77880.2  
At1g77885	chr1:029290371	0.0	W/29290371-29290604	AT1G77885.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G77885.1p  transcript_id AT1G77885.1  protein_id AT1G77885.1p  transcript_id AT1G77885.1  
At1g77890	chr1:029292497	0.0	W/29292497-29292573,29292661-29292748,29292845-29292944,29293026-29293099,29293207-29293278,29293401-29293478,29293679-29293803,29293976-29294048,29294267-29294328,29294582-29294962,29295105-29295204,29295288-29295440	AT1G77890.1  CDS  gene_syn AT1G77900, F28K19.10, F28K19_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08540.1); Has 36 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 2; Plants - 26; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G77890.1p  transcript_id AT1G77890.1  protein_id AT1G77890.1p  transcript_id AT1G77890.1  
At1g77890	chr1:029292497	0.0	W/29292497-29292573,29292661-29292748,29292845-29292944,29293026-29293099,29293207-29293278,29293434-29293478,29293679-29293803,29293976-29294048,29294267-29294328,29294582-29294962,29295105-29295204,29295288-29295440	AT1G77890.2  CDS  gene_syn AT1G77900, F28K19.10, F28K19_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08540.1); Has 38 Blast hits to 36 proteins in 13 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 2; Plants - 26; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G77890.2p  transcript_id AT1G77890.2  protein_id AT1G77890.2p  transcript_id AT1G77890.2  
At1g77910	chr1:029296138	0.0	W/29296138-29296407	AT1G77910.1  CDS  gene_syn F28K19.12, F28K19_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G77910.1p  transcript_id AT1G77910.1  protein_id AT1G77910.1p  transcript_id AT1G77910.1  
At1g77920	chr1:029298959	0.0	W/29298959-29299147,29299238-29299327,29299434-29299493,29299572-29299649,29299756-29300061,29300141-29300371,29300455-29300607	AT1G77920.1  CDS  gene_syn F28K19.13, F28K19_13  go_component nucleus|GO:0005634||IEA  go_process defense response to bacterium|GO:0042742|17369431|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  product bZIP family transcription factor  note bZIP family transcription factor; FUNCTIONS IN: transcription factor activity, calmodulin binding; INVOLVED IN: defense response to bacterium; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: TGA3; DNA binding / calmodulin binding / protein binding / transcription factor (TAIR:AT1G22070.1); Has 659 Blast hits to 658 proteins in 62 species: Archae - 0; Bacteria - 5; Metazoa - 8; Fungi - 11; Plants - 533; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).  protein_id AT1G77920.1p  transcript_id AT1G77920.1  protein_id AT1G77920.1p  transcript_id AT1G77920.1  
At1g77930	chr1:029301184	0.0	W/29301184-29301427,29301645-29301719,29301799-29301938,29302026-29302163,29302249-29302467	AT1G77930.1  CDS  gene_syn F28K19.14, F28K19_14  go_component chloroplast|GO:0009507||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT3G17830.1); Has 13352 Blast hits to 13324 proteins in 1822 species: Archae - 104; Bacteria - 4908; Metazoa - 2610; Fungi - 954; Plants - 803; Viruses - 6; Other Eukaryotes - 3967 (source: NCBI BLink).  protein_id AT1G77930.1p  transcript_id AT1G77930.1  protein_id AT1G77930.1p  transcript_id AT1G77930.1  
At1g77930	chr1:029301184	0.0	W/29301184-29301427,29301645-29301719,29301799-29301938,29302026-29302163,29302249-29302467	AT1G77930.2  CDS  gene_syn F28K19.14, F28K19_14  go_component chloroplast|GO:0009507||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT3G17830.1); Has 13352 Blast hits to 13324 proteins in 1822 species: Archae - 104; Bacteria - 4908; Metazoa - 2610; Fungi - 954; Plants - 803; Viruses - 6; Other Eukaryotes - 3967 (source: NCBI BLink).  protein_id AT1G77930.2p  transcript_id AT1G77930.2  protein_id AT1G77930.2p  transcript_id AT1G77930.2  
At1g77932	chr1:029303009	0.0	C/29303009-29303341	AT1G77932.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT1G22110.1); Has 16 Blast hits to 16 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G77932.1p  transcript_id AT1G77932.1  protein_id AT1G77932.1p  transcript_id AT1G77932.1  
At1g77940	chr1:029305268	0.0	C/29305268-29305288,29305053-29305158,29304862-29304963,29304244-29304312,29304116-29304156	AT1G77940.1  CDS  gene_syn F28K19.15, F28K19_15  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 60S ribosomal protein L30 (RPL30B)  note 60S ribosomal protein L30 (RPL30B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038), Ribosomal protein L30e (InterPro:IPR000231); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L30 (RPL30A) (TAIR:AT1G36240.1); Has 763 Blast hits to 763 proteins in 280 species: Archae - 141; Bacteria - 1; Metazoa - 274; Fungi - 97; Plants - 93; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).  protein_id AT1G77940.1p  transcript_id AT1G77940.1  protein_id AT1G77940.1p  transcript_id AT1G77940.1  
At1g77950	chr1:029307029	0.0	W/29307029-29307213,29308324-29308377,29308469-29308501,29308592-29308610,29308775-29308842,29308948-29308975,29309054-29309115,29309197-29309296,29309379-29309533,29309613-29309667	AT1G77950.1  CDS  gene_syn AGAMOUS-LIKE 67, AGL67, F28K19.16, F28K19_16  gene AGL67  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL67 (AGAMOUS-LIKE 67); transcription factor  note AGAMOUS-LIKE 67 (AGL67); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL66 (AGAMOUS-LIKE 66); transcription factor (TAIR:AT1G77980.1); Has 4188 Blast hits to 4187 proteins in 534 species: Archae - 0; Bacteria - 0; Metazoa - 558; Fungi - 199; Plants - 3374; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT1G77950.1p  transcript_id AT1G77950.1  protein_id AT1G77950.1p  transcript_id AT1G77950.1  
At1g77950	chr1:029307029	0.0	W/29307029-29307213,29308324-29308377,29308469-29308501,29308592-29308610,29308775-29308842,29308948-29308975,29309054-29309115,29309197-29309296,29309379-29309533,29309613-29309667	AT1G77950.2  CDS  gene_syn AGAMOUS-LIKE 67, AGL67, F28K19.16, F28K19_16  gene AGL67  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL67 (AGAMOUS-LIKE 67); transcription factor  note AGAMOUS-LIKE 67 (AGL67); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL66 (AGAMOUS-LIKE 66); transcription factor (TAIR:AT1G77980.1); Has 4188 Blast hits to 4187 proteins in 534 species: Archae - 0; Bacteria - 0; Metazoa - 558; Fungi - 199; Plants - 3374; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT1G77950.2p  transcript_id AT1G77950.2  protein_id AT1G77950.2p  transcript_id AT1G77950.2  
At1g77960	chr1:029312887	0.0	C/29312887-29312973,29312635-29312802,29312306-29312533,29312112-29312221,29311947-29312009,29311524-29311667,29311324-29311431,29311082-29311199,29310886-29310969,29310731-29310795,29310465-29310552	AT1G77960.1  CDS  gene_syn F28K19.17, F28K19_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28630.4); Has 13344 Blast hits to 6583 proteins in 344 species: Archae - 0; Bacteria - 351; Metazoa - 4828; Fungi - 1258; Plants - 360; Viruses - 46; Other Eukaryotes - 6501 (source: NCBI BLink).  protein_id AT1G77960.1p  transcript_id AT1G77960.1  protein_id AT1G77960.1p  transcript_id AT1G77960.1  
At1g77980	chr1:029316883	0.0	C/29316883-29317067,29316729-29316782,29316610-29316642,29316481-29316499,29316295-29316356,29316162-29316189,29316027-29316088,29315833-29315932,29315411-29315743,29315212-29315334	AT1G77980.1  CDS  gene_syn AGAMOUS-LIKE 66, AGL66, F28K19.20, F28K19_20  gene AGL66  function Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL66 is expressed in pollen.It forms heterodimers with other MICK family members (AGL104). Involved in late stages of pollen development and pollen tube growth.  go_component nucleus|GO:0005634||IEA  go_process pollen development|GO:0009555|19211705|IGI  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product AGL66 (AGAMOUS-LIKE 66); transcription factor  note AGAMOUS-LIKE 66 (AGL66); FUNCTIONS IN: transcription factor activity; INVOLVED IN: pollen development, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL104 (AGAMOUS-LIKE 104); DNA binding / transcription factor (TAIR:AT1G22130.1); Has 4398 Blast hits to 4397 proteins in 567 species: Archae - 0; Bacteria - 0; Metazoa - 547; Fungi - 203; Plants - 3589; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT1G77980.1p  transcript_id AT1G77980.1  protein_id AT1G77980.1p  transcript_id AT1G77980.1  
At1g77992	chr1:029322411	0.0	W/29322411-29323358	AT1G77992.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G77990  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G77992.1  
At1g77990	chr1:029322878	0.0	C/29322878-29323249,29322698-29322746,29322409-29322616,29322126-29322300,29321964-29322029,29321632-29321862,29321416-29321542,29320783-29321069,29318621-29318814,29318408-29318502,29318225-29318301,29317965-29318117	AT1G77990.1  CDS  gene_syn AST56, SULPHATE TRANSPORTER 2;2, SULTR2;2  gene AST56  function cDNA encoding a sulfate transporter.  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process sulfate transport|GO:0008272||IEA  go_function sulfate transmembrane transporter activity|GO:0015116||ISS  product AST56; sulfate transmembrane transporter  note AST56; FUNCTIONS IN: sulfate transmembrane transporter activity; INVOLVED IN: sulfate transport, transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Sulphate transporter (InterPro:IPR011547), Sulphate transporter/antisigma-factor antagonist STAS (InterPro:IPR002645), Sulphate anion transporter, conserved site (InterPro:IPR018045), Sulphate anion transporter (InterPro:IPR001902); BEST Arabidopsis thaliana protein match is: AST68; sulfate transmembrane transporter (TAIR:AT5G10180.1); Has 6590 Blast hits to 6536 proteins in 1076 species: Archae - 34; Bacteria - 3390; Metazoa - 979; Fungi - 271; Plants - 322; Viruses - 0; Other Eukaryotes - 1594 (source: NCBI BLink).  protein_id AT1G77990.1p  transcript_id AT1G77990.1  protein_id AT1G77990.1p  transcript_id AT1G77990.1  
At1g78000	chr1:029329889	0.0	W/29329889-29330209,29330292-29330340,29330427-29330634,29330730-29330904,29330998-29331063,29331151-29331264,29331369-29331485,29331573-29331986,29332085-29332275,29332366-29332451,29332545-29332621,29332734-29332877	AT1G78000.1  CDS  gene_syn F28K19.22, F28K19_22, SEL1, SELENATE RESISTANT 1, SULFATE TRANSPORTER, SULFATE TRANSPORTER 1;2, SULTR1;2  gene SULTR1;2  function Encodes a sulfate transporter that can restore sulfate uptake capacity of a yeast mutant lacking sulfate transporter genes.  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process cellular response to sulfate starvation|GO:0009970|18400935|IEP  go_function sulfate transmembrane transporter activity|GO:0015116||ISS  product SULTR1;2 (SULFATE TRANSPORTER 1;2); sulfate transmembrane transporter  note SULFATE TRANSPORTER 1;2 (SULTR1;2); FUNCTIONS IN: sulfate transmembrane transporter activity; INVOLVED IN: cellular response to sulfate starvation; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Sulphate transporter (InterPro:IPR011547), Sulphate transporter/antisigma-factor antagonist STAS (InterPro:IPR002645), Sulphate anion transporter, conserved site (InterPro:IPR018045), Sulphate anion transporter (InterPro:IPR001902); BEST Arabidopsis thaliana protein match is: SULTR1;3; sulfate transmembrane transporter (TAIR:AT1G22150.1); Has 6813 Blast hits to 6758 proteins in 1108 species: Archae - 34; Bacteria - 3520; Metazoa - 986; Fungi - 293; Plants - 324; Viruses - 0; Other Eukaryotes - 1656 (source: NCBI BLink).  protein_id AT1G78000.1p  transcript_id AT1G78000.1  protein_id AT1G78000.1p  transcript_id AT1G78000.1  
At1g78000	chr1:029329889	0.0	W/29329889-29330209,29330292-29330340,29330427-29330634,29330730-29330904,29330998-29331063,29331151-29331264,29331369-29331485,29331573-29331986,29332085-29332275,29332366-29332451,29332545-29332621,29332734-29332877	AT1G78000.2  CDS  gene_syn F28K19.22, F28K19_22, SEL1, SELENATE RESISTANT 1, SULFATE TRANSPORTER, SULFATE TRANSPORTER 1;2, SULTR1;2  gene SULTR1;2  function Encodes a sulfate transporter that can restore sulfate uptake capacity of a yeast mutant lacking sulfate transporter genes.  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process cellular response to sulfate starvation|GO:0009970|18400935|IEP  go_function sulfate transmembrane transporter activity|GO:0015116||ISS  product SULTR1;2 (SULFATE TRANSPORTER 1;2); sulfate transmembrane transporter  note SULFATE TRANSPORTER 1;2 (SULTR1;2); FUNCTIONS IN: sulfate transmembrane transporter activity; INVOLVED IN: cellular response to sulfate starvation; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Sulphate transporter (InterPro:IPR011547), Sulphate transporter/antisigma-factor antagonist STAS (InterPro:IPR002645), Sulphate anion transporter, conserved site (InterPro:IPR018045), Sulphate anion transporter (InterPro:IPR001902); BEST Arabidopsis thaliana protein match is: SULTR1;3; sulfate transmembrane transporter (TAIR:AT1G22150.1); Has 6813 Blast hits to 6758 proteins in 1108 species: Archae - 34; Bacteria - 3520; Metazoa - 986; Fungi - 293; Plants - 324; Viruses - 0; Other Eukaryotes - 1656 (source: NCBI BLink).  protein_id AT1G78000.2p  transcript_id AT1G78000.2  protein_id AT1G78000.2p  transcript_id AT1G78000.2  
At1g78010	chr1:029333535	0.0	W/29333535-29333706,29333809-29334128,29334342-29334480,29334678-29334799,29334907-29335110,29335201-29335260,29335379-29335517,29335597-29335715,29335806-29336018,29336103-29336297	AT1G78010.1  CDS  gene_syn F28K19.23, F28K19_23  go_component intracellular|GO:0005622||IEA  go_process tRNA modification|GO:0006400||IEA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_process tRNA modification|GO:0006400||ISS  go_function GTPase activity|GO:0003924||ISS  product tRNA modification GTPase, putative  note tRNA modification GTPase, putative; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: small GTPase mediated signal transduction, tRNA modification; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding (InterPro:IPR005289), Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), tRNA modification GTPase TrmE (InterPro:IPR004520), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: emb2738 (embryo defective 2738); GTP binding (TAIR:AT3G12080.2); Has 24592 Blast hits to 21257 proteins in 1767 species: Archae - 217; Bacteria - 15891; Metazoa - 407; Fungi - 184; Plants - 146; Viruses - 0; Other Eukaryotes - 7747 (source: NCBI BLink).  protein_id AT1G78010.1p  transcript_id AT1G78010.1  protein_id AT1G78010.1p  transcript_id AT1G78010.1  
At1g78020	chr1:029338787	0.0	W/29338787-29339115,29339332-29339491	AT1G78020.1  CDS  gene_syn F28K19.24, F28K19_24  product senescence-associated protein-related  note senescence-associated protein-related; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: senescence-associated protein-related (TAIR:AT1G22160.1); Has 287 Blast hits to 287 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 287; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G78020.1p  transcript_id AT1G78020.1  protein_id AT1G78020.1p  transcript_id AT1G78020.1  
At1g78030	chr1:029342157	0.0	W/29342157-29342209,29342279-29342414,29342960-29343050,29343071-29343205,29343311-29343347,29343494-29343713	AT1G78030.1  CDS  gene_syn F28K19.25, F28K19_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G37900.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G78030.1p  transcript_id AT1G78030.1  protein_id AT1G78030.1p  transcript_id AT1G78030.1  
At1g78040	chr1:029345993	0.0	W/29345993-29346158,29346491-29346840	AT1G78040.1  CDS  gene_syn F28K19.26, F28K19_26  go_component endomembrane system|GO:0012505||IEA  go_process gluconeogenesis|GO:0006094||IEA  go_process glycolysis|GO:0006096||IEA  go_process serine-isocitrate lyase pathway|GO:0019496||IEA  go_process aerobic glycerol catabolic process|GO:0019564||IEA  go_process anaerobic glycolysis|GO:0019642||IEA  go_process glucose catabolic process to butanediol|GO:0019650||IEA  go_process acetate fermentation|GO:0019654||IEA  go_process glucose catabolic process to D-lactate and ethanol|GO:0019656||IEA  go_process glucose catabolic process to lactate and acetate|GO:0019658||IEA  go_process glyceraldehyde-3-phosphate catabolic process|GO:0019683||IEA  go_function molecular_function|GO:0003674||ND  product pollen Ole e 1 allergen and extensin family protein  note pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 10 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen and extensin (InterPro:IPR006041), TonB box, conserved site (InterPro:IPR010916); BEST Arabidopsis thaliana protein match is: SAH7 (TAIR:AT4G08685.1); Has 188 Blast hits to 188 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 188; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G78040.1p  transcript_id AT1G78040.1  protein_id AT1G78040.1p  transcript_id AT1G78040.1  
At1g78040	chr1:029345993	0.0	W/29345993-29346158,29346491-29346840	AT1G78040.2  CDS  gene_syn F28K19.26, F28K19_26  go_component endomembrane system|GO:0012505||IEA  go_function molecular_function|GO:0003674||ND  product pollen Ole e 1 allergen and extensin family protein  note pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen and extensin (InterPro:IPR006041), TonB box, conserved site (InterPro:IPR010916); BEST Arabidopsis thaliana protein match is: SAH7 (TAIR:AT4G08685.1); Has 188 Blast hits to 188 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 188; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G78040.2p  transcript_id AT1G78040.2  protein_id AT1G78040.2p  transcript_id AT1G78040.2  
At1g78050	chr1:029348095	0.0	W/29348095-29348323,29348409-29348632,29348710-29348828,29348919-29349075,29349150-29349251,29349341-29349460,29349545-29349592	AT1G78050.1  CDS  gene_syn F28K19.30, F28K19_30, PGM, PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE  gene PGM  go_component chloroplast|GO:0009507||IEA  go_function catalytic activity|GO:0003824||IEA  go_function intramolecular transferase activity, phosphotransferases|GO:0016868||IEA  go_process metabolic process|GO:0008152||ISS  go_process response to nitrate|GO:0010167|15333754|IEP  go_function catalytic activity|GO:0003824||ISS  product PGM (PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE); catalytic/ intramolecular transferase, phosphotransferases  note PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE (PGM); FUNCTIONS IN: intramolecular transferase activity, phosphotransferases, catalytic activity; INVOLVED IN: response to nitrate, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078), Phosphoglycerate/bisphosphoglycerate mutase (InterPro:IPR001345), Phosphoglycerate mutase 1 (InterPro:IPR005952); BEST Arabidopsis thaliana protein match is: phosphoglycerate/bisphosphoglycerate mutase family protein (TAIR:AT1G22170.1); Has 7013 Blast hits to 6925 proteins in 1200 species: Archae - 34; Bacteria - 3787; Metazoa - 513; Fungi - 206; Plants - 75; Viruses - 0; Other Eukaryotes - 2398 (source: NCBI BLink).  protein_id AT1G78050.1p  transcript_id AT1G78050.1  protein_id AT1G78050.1p  transcript_id AT1G78050.1  
At1g78060	chr1:029352482	0.0	C/29352482-29352868,29351866-29352168,29351413-29351582,29350474-29351336,29349796-29350376	AT1G78060.1  CDS  gene_syn F28K19.27, F28K19_27  go_component cell wall|GO:0005618|15593128|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 3 protein  note glycosyl hydrolase family 3 protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: apoplast, cell wall, chloroplast, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 3 protein (TAIR:AT5G10560.1); Has 5147 Blast hits to 4532 proteins in 658 species: Archae - 16; Bacteria - 2531; Metazoa - 9; Fungi - 925; Plants - 291; Viruses - 0; Other Eukaryotes - 1375 (source: NCBI BLink).  protein_id AT1G78060.1p  transcript_id AT1G78060.1  protein_id AT1G78060.1p  transcript_id AT1G78060.1  
At1g78070	chr1:029355219	0.0	W/29355219-29355362,29355457-29355630,29355739-29355825,29357085-29357219,29357303-29357413,29357494-29357585,29357670-29357775,29357868-29358368	AT1G78070.1  CDS  gene_syn F28K19.28, F28K19_28  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein (TAIR:AT1G36070.1); Has 110 Blast hits to 110 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 28; Plants - 80; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G78070.1p  transcript_id AT1G78070.1  protein_id AT1G78070.1p  transcript_id AT1G78070.1  
At1g78080	chr1:029364790	0.0	W/29364790-29365794	AT1G78080.1  CDS  gene_syn F28K19.29, F28K19_29, RAP2.4, related to AP2 4  gene RAP2.4  function encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family (RAP2.4). The protein contains one AP2 domain. There are 8 members in this subfamily.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634|9192694|IC  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677|9192694|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9192694|TAS  product RAP2.4 (related to AP2 4); DNA binding / transcription factor  note related to AP2 4 (RAP2.4); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT1G22190.1); Has 3803 Blast hits to 3724 proteins in 204 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 3768; Viruses - 6; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT1G78080.1p  transcript_id AT1G78080.1  protein_id AT1G78080.1p  transcript_id AT1G78080.1  
At1g78090	chr1:029373955	0.0	W/29373955-29374242,29374331-29374471,29374567-29374638,29374748-29374840,29374933-29374989,29375090-29375191,29375534-29375611,29375707-29375776,29375874-29375944,29376059-29376151,29376236-29376295	AT1G78090.1  CDS  gene_syn ATTPPB, T11I11.2, T11I11_2, TREHALOSE-6-PHOSPHATE PHOSPHATASE  gene ATTPPB  function homologous to the C-terminal part of microbial trehalose-6-phosphate phosphatases  go_process trehalose biosynthetic process|GO:0005992|9681009|IDA  go_function trehalose-phosphatase activity|GO:0004805|9681009|IDA  product ATTPPB (TREHALOSE-6-PHOSPHATE PHOSPHATASE); trehalose-phosphatase  note TREHALOSE-6-PHOSPHATE PHOSPHATASE (ATTPPB); FUNCTIONS IN: trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, seedling growth, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: trehalose-6-phosphate phosphatase, putative (TAIR:AT1G35910.1); Has 1482 Blast hits to 1478 proteins in 525 species: Archae - 29; Bacteria - 768; Metazoa - 195; Fungi - 105; Plants - 264; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).  protein_id AT1G78090.1p  transcript_id AT1G78090.1  protein_id AT1G78090.1p  transcript_id AT1G78090.1  
At1g78095	chr1:029377752	0.0	W/29377752-29380183	AT1G78095.1  mRNA_TE_gene  pseudo  gene_syn T11I11.3, T11I11_3  note Transposable element gene, Mutator-like transposase family, has a 5.0e-45 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At1g78100	chr1:029387907	0.0	W/29387907-29388911	AT1G78100.1  CDS  gene_syn T11I11.4, T11I11_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G22220.1); Has 82 Blast hits to 81 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G78100.1p  transcript_id AT1G78100.1  protein_id AT1G78100.1p  transcript_id AT1G78100.1  
At1g78110	chr1:029391879	0.0	W/29391879-29392907	AT1G78110.1  CDS  gene_syn T11I11.5, T11I11_5  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22230.1); Has 5858 Blast hits to 3582 proteins in 234 species: Archae - 4; Bacteria - 138; Metazoa - 2289; Fungi - 485; Plants - 146; Viruses - 151; Other Eukaryotes - 2645 (source: NCBI BLink).  protein_id AT1G78110.1p  transcript_id AT1G78110.1  protein_id AT1G78110.1p  transcript_id AT1G78110.1  
At1g78120	chr1:029395288	0.0	C/29395288-29396003,29394972-29395167,29394308-29394817,29394021-29394191	AT1G78120.1  CDS  gene_syn T11I11.6, T11I11_6  go_function binding|GO:0005488||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  product tetratricopeptide repeat (TPR)-containing protein  note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; LOCATED IN: mitochondrion; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT5G65160.1); Has 11653 Blast hits to 7027 proteins in 589 species: Archae - 508; Bacteria - 2639; Metazoa - 3642; Fungi - 1070; Plants - 906; Viruses - 0; Other Eukaryotes - 2888 (source: NCBI BLink).  protein_id AT1G78120.1p  transcript_id AT1G78120.1  protein_id AT1G78120.1p  transcript_id AT1G78120.1  
At1g78130	chr1:029400171	0.0	W/29400171-29400458,29400544-29401298,29401385-29401814	AT1G78130.1  CDS  gene_syn T11I11.7, T11I11_7, UNE2, unfertilized embryo sac 2  gene UNE2  go_component membrane|GO:0016020||ISS  go_process double fertilization forming a zygote and endosperm|GO:0009567|15634699|IMP  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product UNE2 (unfertilized embryo sac 2); carbohydrate transmembrane transporter/ sugar:hydrogen symporter  note unfertilized embryo sac 2 (UNE2); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: double fertilization forming a zygote and endosperm; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: transporter-related (TAIR:AT5G10190.1); Has 9495 Blast hits to 9466 proteins in 1158 species: Archae - 234; Bacteria - 7499; Metazoa - 336; Fungi - 220; Plants - 187; Viruses - 2; Other Eukaryotes - 1017 (source: NCBI BLink).  protein_id AT1G78130.1p  transcript_id AT1G78130.1  protein_id AT1G78130.1p  transcript_id AT1G78130.1  
At1g78140	chr1:029403705	0.0	C/29403705-29403878,29403403-29403512,29403146-29403289,29402978-29403059,29402592-29402788,29402391-29402502,29402199-29402306,29401937-29402077	AT1G78140.1  CDS  gene_syn T11I11.8, T11I11_8  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_process metabolic process|GO:0008152||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_component plastoglobule|GO:0010287|16461379|IDA  product methyltransferase-related  note methyltransferase-related; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast, plastoglobule; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: methyltransferase-related (TAIR:AT2G41040.1); Has 3459 Blast hits to 3458 proteins in 853 species: Archae - 143; Bacteria - 2524; Metazoa - 44; Fungi - 102; Plants - 117; Viruses - 0; Other Eukaryotes - 529 (source: NCBI BLink).  protein_id AT1G78140.1p  transcript_id AT1G78140.1  protein_id AT1G78140.1p  transcript_id AT1G78140.1  
At1g78150	chr1:029404996	0.0	W/29404996-29405118,29405214-29405287,29405553-29405652,29405731-29406009,29406093-29406341	AT1G78150.1  CDS  gene_syn T11I11.9, T11I11_9  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G35780.1); Has 77 Blast hits to 76 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G78150.1p  transcript_id AT1G78150.1  protein_id AT1G78150.1p  transcript_id AT1G78150.1  
At1g78150	chr1:029404996	0.0	W/29404996-29405118,29405214-29405287,29405553-29405652,29405731-29406009,29406093-29406341	AT1G78150.2  CDS  gene_syn T11I11.9, T11I11_9  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G35780.1); Has 77 Blast hits to 76 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G78150.2p  transcript_id AT1G78150.2  protein_id AT1G78150.2p  transcript_id AT1G78150.2  
At1g78160	chr1:029407900	0.0	W/29407900-29409164,29409242-29409404,29409489-29409652,29409732-29409987,29410080-29410184	AT1G78160.1  CDS  gene_syn APUM7, Arabidopsis Pumilio 7, T11I11.10, T11I11_10  gene APUM7  go_component chloroplast|GO:0009507||IEA  go_function RNA binding|GO:0003723||IEA  go_function binding|GO:0005488||IEA  go_function RNA binding|GO:0003723||ISS  product APUM7 (Arabidopsis Pumilio 7); RNA binding / binding  note Arabidopsis Pumilio 7 (APUM7); FUNCTIONS IN: RNA binding, binding; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding region (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: APUM8 (Arabidopsis Pumilio 8); RNA binding / binding (TAIR:AT1G22240.1); Has 2007 Blast hits to 1170 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 623; Fungi - 551; Plants - 358; Viruses - 0; Other Eukaryotes - 475 (source: NCBI BLink).  protein_id AT1G78160.1p  transcript_id AT1G78160.1  protein_id AT1G78160.1p  transcript_id AT1G78160.1  
At1g78170	chr1:029414160	0.0	W/29414160-29414375,29414492-29414941	AT1G78170.1  CDS  gene_syn T11I11.11, T11I11_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22250.1); Has 35 Blast hits to 35 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G78170.1p  transcript_id AT1G78170.1  protein_id AT1G78170.1p  transcript_id AT1G78170.1  
At1g78172	chr1:029415530	0.0	W/29415530-29415640,29415745-29415921	AT1G78172.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G78172.1p  transcript_id AT1G78172.1  protein_id AT1G78172.1p  transcript_id AT1G78172.1  
At1g78180	chr1:029416919	0.0	W/29416919-29417334,29417450-29417753,29417902-29418369,29418457-29418525	AT1G78180.1  CDS  gene_syn T11I11.12, T11I11_12  go_component mitochondrial inner membrane|GO:0005743||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function binding|GO:0005488||ISS  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: mitochondrial substrate carrier family protein (TAIR:AT5G64970.1); Has 16753 Blast hits to 9523 proteins in 352 species: Archae - 0; Bacteria - 0; Metazoa - 8591; Fungi - 4306; Plants - 2418; Viruses - 0; Other Eukaryotes - 1438 (source: NCBI BLink).  protein_id AT1G78180.1p  transcript_id AT1G78180.1  protein_id AT1G78180.1p  transcript_id AT1G78180.1  
At1g78190	chr1:029418620	0.0	C/29418620-29418994	AT1G78190.1  CDS  gene_syn T11I11.13, T11I11_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF343 (InterPro:IPR005651); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22270.1); Has 285 Blast hits to 285 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 117; Fungi - 81; Plants - 34; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT1G78190.1p  transcript_id AT1G78190.1  protein_id AT1G78190.1p  transcript_id AT1G78190.1  
At1g78200	chr1:029420483	0.0	W/29420483-29420518,29420592-29420828,29420915-29421200,29421282-29421436,29421513-29421650	AT1G78200.1  CDS  gene_syn T11I11.14, T11I11_14  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function catalytic activity|GO:0003824||IEA  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT1G22280.1); Has 5098 Blast hits to 5075 proteins in 603 species: Archae - 4; Bacteria - 895; Metazoa - 1287; Fungi - 536; Plants - 1307; Viruses - 11; Other Eukaryotes - 1058 (source: NCBI BLink).  protein_id AT1G78200.1p  transcript_id AT1G78200.1  protein_id AT1G78200.1p  transcript_id AT1G78200.1  
At1g78200	chr1:029420483	0.0	W/29420483-29420518,29420592-29420828,29420915-29421200,29421282-29421436,29421513-29421650	AT1G78200.2  CDS  gene_syn T11I11.14, T11I11_14  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function catalytic activity|GO:0003824||IEA  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT1G22280.1); Has 5098 Blast hits to 5075 proteins in 603 species: Archae - 4; Bacteria - 895; Metazoa - 1287; Fungi - 536; Plants - 1307; Viruses - 11; Other Eukaryotes - 1058 (source: NCBI BLink).  protein_id AT1G78200.2p  transcript_id AT1G78200.2  protein_id AT1G78200.2p  transcript_id AT1G78200.2  
At1g78206	chr1:029422452	0.0	W/29422452-29422574	AT1G78206.1  miRNA  gene_syn MICRORNA775A, MIR775A  gene MIR775A  function Encodes a microRNA that targets a Galactosyltransferase Avr9 elicitor. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUCGAUGUCUAGCAGUGCCAA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR775A (MICRORNA775A); miRNA  transcript_id AT1G78206.1  
At1g78210	chr1:029423656	0.0	C/29423656-29424294,29423130-29423222,29422820-29423032	AT1G78210.1  CDS  gene_syn T11I11.15, T11I11_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase (TAIR:AT5G09430.1); Has 5486 Blast hits to 5484 proteins in 883 species: Archae - 44; Bacteria - 3397; Metazoa - 213; Fungi - 51; Plants - 215; Viruses - 0; Other Eukaryotes - 1566 (source: NCBI BLink).  protein_id AT1G78210.1p  transcript_id AT1G78210.1  protein_id AT1G78210.1p  transcript_id AT1G78210.1  
At1g78220	chr1:029427115	0.0	C/29427115-29427181,29426479-29426788,29426297-29426384,29426072-29426181,29425721-29425883	AT1G78220.1  CDS  gene_syn GF 14 PI CHAIN, GF14 PI, GRF13, T11I11.16, T11I11_16  gene GRF13  function 14-3-3 protein GF14 pi  go_component cellular_component|GO:0005575||ND  go_function protein binding|GO:0005515||ISS  go_function protein phosphorylated amino acid binding|GO:0045309|10631267|TAS  product GRF13; protein binding / protein phosphorylated amino acid binding  note GRF13; FUNCTIONS IN: protein phosphorylated amino acid binding, protein binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: sepal, fruit, leaf; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: GRF10 (GENERAL REGULATORY FACTOR 10); ATP binding / protein binding / protein phosphorylated amino acid binding (TAIR:AT1G22300.3); Has 2048 Blast hits to 2041 proteins in 287 species: Archae - 0; Bacteria - 0; Metazoa - 1011; Fungi - 206; Plants - 529; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink).  protein_id AT1G78220.1p  transcript_id AT1G78220.1  protein_id AT1G78220.1p  transcript_id AT1G78220.1  
At1g78230	chr1:029430226	0.0	W/29430226-29430573,29430663-29431704,29431785-29431931,29432008-29432516	AT1G78230.1  CDS  gene_syn T11I11.17, T11I11_17  go_component vacuole|GO:0005773|15539469|IDA  go_function protein binding|GO:0005515||IEA  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT4G03260.2); Has 16128 Blast hits to 10255 proteins in 478 species: Archae - 6; Bacteria - 4677; Metazoa - 7591; Fungi - 626; Plants - 1688; Viruses - 44; Other Eukaryotes - 1496 (source: NCBI BLink).  protein_id AT1G78230.1p  transcript_id AT1G78230.1  protein_id AT1G78230.1p  transcript_id AT1G78230.1  
At1g78240	chr1:029435127	0.0	C/29435127-29435815,29434928-29435057,29434596-29434836,29434293-29434506,29434012-29434187,29433623-29433926,29433410-29433551,29433173-29433331	AT1G78240.1  CDS  gene_syn F3F9.21, F3F9_21, QUA2, QUASIMODO2, TSD2, TUMOROUS SHOOT DEVELOPMENT 2  gene TSD2  function Encodes TSD2 (TUMOROUS SHOOT DEVELOPMENT2), a putative methyltransferase with an essential role in cell adhesion and coordinated plant development.  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component Golgi apparatus|GO:0005794|17425712|IDA  go_component Golgi apparatus|GO:0005794|17461780|IDA  go_process response to cytokinin stimulus|GO:0009735|12060228|IMP  go_process homogalacturonan biosynthetic process|GO:0010289|17425712|IMP  go_process root development|GO:0048364|17461780|IMP  go_process shoot development|GO:0048367|12060228|IMP  go_function methyltransferase activity|GO:0008168|17425712|IMP  product TSD2 (TUMOROUS SHOOT DEVELOPMENT 2); methyltransferase  note TUMOROUS SHOOT DEVELOPMENT 2 (TSD2); FUNCTIONS IN: methyltransferase activity; INVOLVED IN: shoot development, homogalacturonan biosynthetic process, root development, response to cytokinin stimulus; LOCATED IN: Golgi apparatus; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive protein-related (TAIR:AT1G13860.4); Has 666 Blast hits to 652 proteins in 110 species: Archae - 4; Bacteria - 120; Metazoa - 0; Fungi - 29; Plants - 476; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT1G78240.1p  transcript_id AT1G78240.1  protein_id AT1G78240.1p  transcript_id AT1G78240.1  
At1g78240	chr1:029435127	0.0	C/29435127-29435815,29434928-29435057,29434596-29434836,29434293-29434506,29434012-29434187,29433623-29433926,29433410-29433551,29433173-29433331	AT1G78240.2  CDS  gene_syn F3F9.21, F3F9_21, QUA2, QUASIMODO2, TSD2, TUMOROUS SHOOT DEVELOPMENT 2  gene TSD2  function Encodes TSD2 (TUMOROUS SHOOT DEVELOPMENT2), a putative methyltransferase with an essential role in cell adhesion and coordinated plant development.  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component Golgi apparatus|GO:0005794|17425712|IDA  go_component Golgi apparatus|GO:0005794|17461780|IDA  go_process response to cytokinin stimulus|GO:0009735|12060228|IMP  go_process homogalacturonan biosynthetic process|GO:0010289|17425712|IMP  go_process root development|GO:0048364|17461780|IMP  go_process shoot development|GO:0048367|12060228|IMP  go_function methyltransferase activity|GO:0008168|17425712|IMP  product TSD2 (TUMOROUS SHOOT DEVELOPMENT 2); methyltransferase  note TUMOROUS SHOOT DEVELOPMENT 2 (TSD2); FUNCTIONS IN: methyltransferase activity; INVOLVED IN: shoot development, homogalacturonan biosynthetic process, root development, response to cytokinin stimulus; LOCATED IN: Golgi apparatus; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive protein-related (TAIR:AT1G13860.4).  protein_id AT1G78240.2p  transcript_id AT1G78240.2  protein_id AT1G78240.2p  transcript_id AT1G78240.2  
At1g78250	chr1:029443973	0.0	C/29443973-29444010	AT1G78250.1  tRNA  gene_syn 52154.TRNA-MET-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Met (anticodon: CAT)  transcript_id AT1G78250.1  
At1g78260	chr1:029447317	0.0	W/29447317-29447502,29447582-29447705,29448130-29448247,29448627-29448663,29448896-29449190,29450078-29450181	AT1G78260.1  CDS  gene_syn F3F9.20, F3F9_20  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT1G22330.1); Has 14940 Blast hits to 11778 proteins in 563 species: Archae - 2; Bacteria - 773; Metazoa - 8589; Fungi - 1576; Plants - 2603; Viruses - 0; Other Eukaryotes - 1397 (source: NCBI BLink).  protein_id AT1G78260.1p  transcript_id AT1G78260.1  protein_id AT1G78260.1p  transcript_id AT1G78260.1  
At1g78260	chr1:029447317	0.0	W/29447317-29447502,29447582-29447705,29448130-29448247,29448627-29448663,29448896-29449246	AT1G78260.2  CDS  gene_syn F3F9.20, F3F9_20  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT1G22330.1); Has 14742 Blast hits to 11606 proteins in 561 species: Archae - 2; Bacteria - 773; Metazoa - 8486; Fungi - 1527; Plants - 2579; Viruses - 0; Other Eukaryotes - 1375 (source: NCBI BLink).  protein_id AT1G78260.2p  transcript_id AT1G78260.2  protein_id AT1G78260.2p  transcript_id AT1G78260.2  
At1g78265	chr1:029450772	0.0	W/29450772-29452305	AT1G78265.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G78270  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G78265.1  
At1g78265	chr1:029450816	0.0	W/29450816-29452378	AT1G78265.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G78270  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G78265.2  
At1g78270	chr1:029451707	0.0	C/29451707-29452223,29450691-29451643	AT1G78270.1  CDS  gene_syn AtUGT85A4, F3F9.19, F3F9_19, UDP-glucosyl transferase 85A4  gene AtUGT85A4  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function glucuronosyltransferase activity|GO:0015020|17498920|ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product AtUGT85A4 (UDP-glucosyl transferase 85A4); UDP-glycosyltransferase/ glucuronosyltransferase/ transferase, transferring hexosyl groups  note UDP-glucosyl transferase 85A4 (AtUGT85A4); FUNCTIONS IN: transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, glucuronosyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT85A1; UDP-glycosyltransferase/ cis-zeatin O-beta-D-glucosyltransferase/ glucuronosyltransferase/ trans-zeatin O-beta-D-glucosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT1G22400.1); Has 5047 Blast hits to 4988 proteins in 317 species: Archae - 0; Bacteria - 54; Metazoa - 2030; Fungi - 41; Plants - 2777; Viruses - 115; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G78270.1p  transcript_id AT1G78270.1  protein_id AT1G78270.1p  transcript_id AT1G78270.1  
At1g78280	chr1:029452823	0.0	W/29452823-29452956,29453150-29453260,29453375-29453427,29453505-29453647,29453735-29453932,29454047-29454246,29454342-29454441,29454523-29455101,29455203-29455325,29455427-29455507,29455584-29455915,29456003-29456221,29456317-29456404,29456483-29456642,29456721-29456904,29456992-29457118	AT1G78280.1  CDS  gene_syn F3F9.18, F3F9_18  go_component cellular_component|GO:0005575||ND  go_process cell surface receptor linked signal transduction|GO:0007166||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product transferase, transferring glycosyl groups  note transferase, transferring glycosyl groups; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: cell surface receptor linked signal transduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Transcription factor jumonji (InterPro:IPR013129), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06550.1); Has 1095 Blast hits to 1087 proteins in 213 species: Archae - 0; Bacteria - 203; Metazoa - 577; Fungi - 95; Plants - 80; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink).  protein_id AT1G78280.1p  transcript_id AT1G78280.1  protein_id AT1G78280.1p  transcript_id AT1G78280.1  
At1g78290	chr1:029458790	0.0	C/29458790-29458909,29458629-29458703,29458456-29458557,29458309-29458362,29457815-29458204,29457457-29457747	AT1G78290.2  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process response to osmotic stress|GO:0006970||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product serine/threonine protein kinase, putative  note serine/threonine protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, response to osmotic stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Plant protein serine/threonine kinase-like (InterPro:IPR015740), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: OST1 (OPEN STOMATA 1); calcium-dependent protein serine/threonine kinase/ kinase/ protein kinase (TAIR:AT4G33950.1); Has 82690 Blast hits to 81395 proteins in 1928 species: Archae - 51; Bacteria - 7333; Metazoa - 35442; Fungi - 8090; Plants - 14997; Viruses - 418; Other Eukaryotes - 16359 (source: NCBI BLink).  protein_id AT1G78290.2p  transcript_id AT1G78290.2  protein_id AT1G78290.2p  transcript_id AT1G78290.2  
At1g78290	chr1:029458790	0.0	C/29458790-29458909,29458629-29458703,29458456-29458557,29458309-29458362,29457815-29458204,29457457-29457747	AT1G78290.3  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process response to osmotic stress|GO:0006970||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product serine/threonine protein kinase, putative  note serine/threonine protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, response to osmotic stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Plant protein serine/threonine kinase-like (InterPro:IPR015740), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: OST1 (OPEN STOMATA 1); calcium-dependent protein serine/threonine kinase/ kinase/ protein kinase (TAIR:AT4G33950.1); Has 82690 Blast hits to 81395 proteins in 1928 species: Archae - 51; Bacteria - 7333; Metazoa - 35442; Fungi - 8090; Plants - 14997; Viruses - 418; Other Eukaryotes - 16359 (source: NCBI BLink).  protein_id AT1G78290.3p  transcript_id AT1G78290.3  protein_id AT1G78290.3p  transcript_id AT1G78290.3  
At1g78300	chr1:029461883	0.0	W/29461883-29462359,29462537-29462659,29462772-29462888,29462990-29463052	AT1G78300.1  CDS  gene_syn 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, 14-3-3OMEGA, F3F9.16, F3F9_16, GENERAL REGULATORY FACTOR 2, GF14 OMEGA, GRF2  gene GRF2  function G-box binding factor GF14 omega encoding a 14-3-3 protein  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process brassinosteroid mediated signaling|GO:0009742|17681130|IPI  go_function protein binding|GO:0005515||NAS  go_function protein phosphorylated amino acid binding|GO:0045309|10631267|TAS  product GRF2 (GENERAL REGULATORY FACTOR 2); protein binding / protein phosphorylated amino acid binding  note GENERAL REGULATORY FACTOR 2 (GRF2); FUNCTIONS IN: protein phosphorylated amino acid binding, protein binding; INVOLVED IN: brassinosteroid mediated signaling; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: GF14 PHI (GF14 PROTEIN PHI CHAIN); protein binding / protein phosphorylated amino acid binding (TAIR:AT1G35160.1); Has 2097 Blast hits to 2088 proteins in 293 species: Archae - 0; Bacteria - 0; Metazoa - 1027; Fungi - 224; Plants - 541; Viruses - 0; Other Eukaryotes - 305 (source: NCBI BLink).  protein_id AT1G78300.1p  transcript_id AT1G78300.1  protein_id AT1G78300.1p  transcript_id AT1G78300.1  
At1g78310	chr1:029464003	0.0	C/29464003-29464938	AT1G78310.1  CDS  gene_syn F3F9.15, F3F9_15  go_component chloroplast|GO:0009507||IEA  product VQ motif-containing protein  note VQ motif-containing protein; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT2G35230.1); Has 2018 Blast hits to 1582 proteins in 200 species: Archae - 0; Bacteria - 53; Metazoa - 798; Fungi - 345; Plants - 562; Viruses - 79; Other Eukaryotes - 181 (source: NCBI BLink).  protein_id AT1G78310.1p  transcript_id AT1G78310.1  protein_id AT1G78310.1p  transcript_id AT1G78310.1  
At1g78320	chr1:029468044	0.0	C/29468044-29468358,29467581-29467928	AT1G78320.1  CDS  gene_syn ATGSTU23, F3F9.14, F3F9_14, GLUTATHIONE S-TRANSFERASE TAU 23  gene ATGSTU23  function Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTU23 (GLUTATHIONE S-TRANSFERASE TAU 23); glutathione transferase  note GLUTATHIONE S-TRANSFERASE TAU 23 (ATGSTU23); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTU25 (GLUTATHIONE S-TRANSFERASE TAU 25); glutathione transferase (TAIR:AT1G17180.1); Has 4955 Blast hits to 4949 proteins in 785 species: Archae - 0; Bacteria - 2374; Metazoa - 499; Fungi - 122; Plants - 1161; Viruses - 0; Other Eukaryotes - 799 (source: NCBI BLink).  protein_id AT1G78320.1p  transcript_id AT1G78320.1  protein_id AT1G78320.1p  transcript_id AT1G78320.1  
At1g78330	chr1:029469848	0.0	C/29469848-29471958	AT1G78330.1  pseudogenic_transcript  pseudo  gene_syn F3F9.25  note pseudogene, putative serine acetyltransferase, blastp match of 78% identity and 4.2e-32 P-value to GP|22758278|gb|AAN05506.1||AC099399 Putative serine acetyltransferase {Oryza sativa (japonica cultivar-group)}  
At1g78340	chr1:029473483	0.0	C/29473483-29473797,29473046-29473387	AT1G78340.1  CDS  gene_syn ATGSTU22, F3F9.13, F3F9_13, GLUTATHIONE S-TRANSFERASE TAU 22  gene ATGSTU22  function Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22); glutathione transferase  note GLUTATHIONE S-TRANSFERASE TAU 22 (ATGSTU22); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: response to cyclopentenone, toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTU19 (GLUTATHIONE S-TRANSFERASE TAU 19); glutathione binding / glutathione transferase (TAIR:AT1G78380.1); Has 5916 Blast hits to 5882 proteins in 843 species: Archae - 0; Bacteria - 2827; Metazoa - 894; Fungi - 102; Plants - 1189; Viruses - 0; Other Eukaryotes - 904 (source: NCBI BLink).  protein_id AT1G78340.1p  transcript_id AT1G78340.1  protein_id AT1G78340.1p  transcript_id AT1G78340.1  
At1g78350	chr1:029474914	0.0	W/29474914-29478272	AT1G78350.1  mRNA_TE_gene  pseudo  gene_syn F3F9.12  note Transposable element gene, Mutator-like transposase family, has a 9.0e-42 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At1g78355	chr1:029478504	0.0	C/29478504-29479108	AT1G78355.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G17277.1); similar to GRF zinc finger containing protein [Brassica oleracea] (GB:ABD64950.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Zinc finger, GRF-type; (InterPro:IPR010666)  
At1g78360	chr1:029482649	0.0	C/29482649-29482966,29482070-29482420	AT1G78360.1  CDS  gene_syn ATGSTU21, F3F9.24, F3F9_24, GLUTATHIONE S-TRANSFERASE TAU 21  gene ATGSTU21  function Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTU21 (GLUTATHIONE S-TRANSFERASE TAU 21); glutathione transferase  note GLUTATHIONE S-TRANSFERASE TAU 21 (ATGSTU21); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTU19 (GLUTATHIONE S-TRANSFERASE TAU 19); glutathione binding / glutathione transferase (TAIR:AT1G78380.1); Has 2957 Blast hits to 2953 proteins in 638 species: Archae - 0; Bacteria - 1216; Metazoa - 279; Fungi - 104; Plants - 1044; Viruses - 0; Other Eukaryotes - 314 (source: NCBI BLink).  protein_id AT1G78360.1p  transcript_id AT1G78360.1  protein_id AT1G78360.1p  transcript_id AT1G78360.1  
At1g78370	chr1:029484890	0.0	C/29484890-29485204,29484428-29484766	AT1G78370.1  CDS  gene_syn ATGSTU20, F3F9.23, F3F9_23, GLUTATHIONE S-TRANSFERASE TAU 20  gene ATGSTU20  function Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).  go_component chloroplast|GO:0009507|18431481|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20); glutathione transferase  note GLUTATHIONE S-TRANSFERASE TAU 20 (ATGSTU20); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: toxin catabolic process; LOCATED IN: apoplast, chloroplast, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTU19 (GLUTATHIONE S-TRANSFERASE TAU 19); glutathione binding / glutathione transferase (TAIR:AT1G78380.1); Has 4991 Blast hits to 4958 proteins in 796 species: Archae - 0; Bacteria - 2144; Metazoa - 825; Fungi - 137; Plants - 1158; Viruses - 0; Other Eukaryotes - 727 (source: NCBI BLink).  protein_id AT1G78370.1p  transcript_id AT1G78370.1  protein_id AT1G78370.1p  transcript_id AT1G78370.1  
At1g78380	chr1:029487505	0.0	C/29487505-29487819,29486659-29487003	AT1G78380.1  CDS  gene_syn ATGSTU19, F3F9.11, F3F9_11, GLUTATHIONE S-TRANSFERASE TAU 19, GLUTATHIONE TRANSFERASE 8, GST8  gene ATGSTU19  function Encodes a glutathione transferase that is a member of Tau GST gene family. Expression is induced by drought stress, oxidative stress, and high doses of auxin and cytokinin. naming convention according to Wagner et al. (2002) The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function glutathione binding|GO:0043295|15159623|IDA  go_component cytoplasm|GO:0005737|12090627|NAS  go_process response to oxidative stress|GO:0006979|12207667|IEP  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_process cellular response to water deprivation|GO:0042631|12207667|IEP  go_function glutathione transferase activity|GO:0004364|12207667|ISS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTU19 (GLUTATHIONE S-TRANSFERASE TAU 19); glutathione binding / glutathione transferase  note GLUTATHIONE S-TRANSFERASE TAU 19 (ATGSTU19); FUNCTIONS IN: glutathione transferase activity, glutathione binding; INVOLVED IN: response to oxidative stress, response to cadmium ion, response to cyclopentenone, cellular response to water deprivation, toxin catabolic process; LOCATED IN: chloroplast, plasma membrane, chloroplast stroma, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTU25 (GLUTATHIONE S-TRANSFERASE TAU 25); glutathione transferase (TAIR:AT1G17180.1); Has 4539 Blast hits to 4536 proteins in 791 species: Archae - 0; Bacteria - 2103; Metazoa - 494; Fungi - 104; Plants - 1103; Viruses - 0; Other Eukaryotes - 735 (source: NCBI BLink).  protein_id AT1G78380.1p  transcript_id AT1G78380.1  protein_id AT1G78380.1p  transcript_id AT1G78380.1  
At1g78390	chr1:029490895	0.0	C/29490895-29492868	AT1G78390.1  CDS  gene_syn ATNCED9, F3F9.10, F3F9_10, NCED9, NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 9  gene NCED9  function Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene increases during the first 6h of imbibition.  go_component chloroplast stroma|GO:0009570|12834401|IDA  go_process abscisic acid biosynthetic process|GO:0009688|12834401|TAS  go_function 9-cis-epoxycarotenoid dioxygenase activity|GO:0045549|11532178|IDA  go_function 9-cis-epoxycarotenoid dioxygenase activity|GO:0045549|12834401|TAS  product NCED9 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 9); 9-cis-epoxycarotenoid dioxygenase  note NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 9 (NCED9); FUNCTIONS IN: 9-cis-epoxycarotenoid dioxygenase activity; INVOLVED IN: abscisic acid biosynthetic process; LOCATED IN: chloroplast stroma; EXPRESSED IN: seed; CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3); 9-cis-epoxycarotenoid dioxygenase (TAIR:AT3G14440.1); Has 2137 Blast hits to 2113 proteins in 360 species: Archae - 10; Bacteria - 531; Metazoa - 201; Fungi - 114; Plants - 571; Viruses - 0; Other Eukaryotes - 710 (source: NCBI BLink).  protein_id AT1G78390.1p  transcript_id AT1G78390.1  protein_id AT1G78390.1p  transcript_id AT1G78390.1  
At1g78400	chr1:029499527	0.0	C/29499527-29499682,29498587-29499414,29498281-29498511	AT1G78400.1  CDS  gene_syn F3F9.9, F3F9_9  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT2G33160.1); Has 2250 Blast hits to 2242 proteins in 286 species: Archae - 2; Bacteria - 323; Metazoa - 8; Fungi - 977; Plants - 881; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT1G78400.1p  transcript_id AT1G78400.1  protein_id AT1G78400.1p  transcript_id AT1G78400.1  
At1g78410	chr1:029502728	0.0	W/29502728-29503054	AT1G78410.1  CDS  gene_syn F3F9.8, F3F9_8  go_component cellular_component|GO:0005575||ND  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_function molecular_function|GO:0003674||ND  product VQ motif-containing protein  note VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17147.1); Has 36 Blast hits to 36 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G78410.1p  transcript_id AT1G78410.1  protein_id AT1G78410.1p  transcript_id AT1G78410.1  
At1g78420	chr1:029505278	0.0	W/29505278-29505469,29505557-29505608,29505696-29505741,29505871-29505952,29506056-29506200,29506297-29506390,29506601-29506667,29506745-29507272	AT1G78420.1  CDS  gene_syn F3F9.7, F3F9_7  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G17145.1); Has 170 Blast hits to 170 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 109; Plants - 32; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G78420.1p  transcript_id AT1G78420.1  protein_id AT1G78420.1p  transcript_id AT1G78420.1  
At1g78430	chr1:029509605	0.0	W/29509605-29509618,29509719-29510679	AT1G78430.1  CDS  gene_syn F3F9.6, F3F9_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: tropomyosin-related (TAIR:AT1G17140.2); Has 36552 Blast hits to 19717 proteins in 1278 species: Archae - 377; Bacteria - 3766; Metazoa - 19812; Fungi - 2701; Plants - 1105; Viruses - 197; Other Eukaryotes - 8594 (source: NCBI BLink).  protein_id AT1G78430.1p  transcript_id AT1G78430.1  protein_id AT1G78430.1p  transcript_id AT1G78430.1  
At1g78440	chr1:029512620	0.0	C/29512620-29512990,29512124-29512478,29511772-29512035	AT1G78440.1  CDS  gene_syn ATGA2OX1, F3F9.5, F3F9_5, gibberellin 2-oxidase 1  gene ATGA2OX1  function Encodes a gibberellin 2-oxidase.  go_process gibberellin catabolic process|GO:0045487|10200325|IDA  go_function gibberellin 2-beta-dioxygenase activity|GO:0045543|10200325|IDA  product ATGA2OX1 (gibberellin 2-oxidase 1); gibberellin 2-beta-dioxygenase  note gibberellin 2-oxidase 1 (ATGA2OX1); FUNCTIONS IN: gibberellin 2-beta-dioxygenase activity; INVOLVED IN: gibberellin catabolic process; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: ATGA2OX2 (GIBBERELLIN 2-OXIDASE); gibberellin 2-beta-dioxygenase (TAIR:AT1G30040.1); Has 5813 Blast hits to 5789 proteins in 666 species: Archae - 0; Bacteria - 690; Metazoa - 92; Fungi - 621; Plants - 3065; Viruses - 0; Other Eukaryotes - 1345 (source: NCBI BLink).  protein_id AT1G78440.1p  transcript_id AT1G78440.1  protein_id AT1G78440.1p  transcript_id AT1G78440.1  
At1g78450	chr1:029517675	0.0	C/29517675-29517910,29517147-29517588	AT1G78450.1  CDS  gene_syn F3F9.4  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function binding|GO:0005488||ISS  product SOUL heme-binding family protein  note SOUL heme-binding family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: SOUL haem-binding protein (InterPro:IPR006917); BEST Arabidopsis thaliana protein match is: SOUL heme-binding family protein (TAIR:AT1G17100.1); Has 574 Blast hits to 564 proteins in 43 species: Archae - 2; Bacteria - 14; Metazoa - 145; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 346 (source: NCBI BLink).  protein_id AT1G78450.1p  transcript_id AT1G78450.1  protein_id AT1G78450.1p  transcript_id AT1G78450.1  
At1g78460	chr1:029519034	0.0	C/29519034-29519296,29518547-29518943	AT1G78460.1  CDS  gene_syn F3F9.3  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function binding|GO:0005488||ISS  product SOUL heme-binding family protein  note SOUL heme-binding family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SOUL haem-binding protein (InterPro:IPR006917); BEST Arabidopsis thaliana protein match is: SOUL heme-binding family protein (TAIR:AT1G17100.1); Has 924 Blast hits to 890 proteins in 69 species: Archae - 2; Bacteria - 58; Metazoa - 200; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 581 (source: NCBI BLink).  protein_id AT1G78460.1p  transcript_id AT1G78460.1  protein_id AT1G78460.1p  transcript_id AT1G78460.1  
At1g78470	chr1:029521770	0.0	W/29521770-29522324,29522402-29522566,29522688-29522996	AT1G78470.1  CDS  gene_syn F3F9.2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G67390.1); Has 18 Blast hits to 18 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G78470.1p  transcript_id AT1G78470.1  protein_id AT1G78470.1p  transcript_id AT1G78470.1  
At1g78478	chr1:029525194	0.0	W/29525194-29525294	AT1G78478.1  miRNA  gene_syn MICRORNA833A, MIR833A  gene MIR833A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UAGACCGAUGUCAACAAACAAG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR833A (MICRORNA833A); miRNA  transcript_id AT1G78478.1  
At1g78480	chr1:029526032	0.0	C/29526032-29526363,29525785-29525860,29525501-29525701	AT1G78480.1  CDS  gene_syn F3F9.1  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  product prenyltransferase/squalene oxidase repeat-containing protein  note prenyltransferase/squalene oxidase repeat-containing protein; FUNCTIONS IN: catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: ATLUP2; beta-amyrin synthase/ lupeol synthase (TAIR:AT1G78960.1); Has 429 Blast hits to 427 proteins in 136 species: Archae - 0; Bacteria - 5; Metazoa - 62; Fungi - 116; Plants - 214; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT1G78480.1p  transcript_id AT1G78480.1  protein_id AT1G78480.1p  transcript_id AT1G78480.1  
At1g78490	chr1:029528349	0.0	W/29528349-29528557,29528640-29528964,29529039-29529191,29529290-29529538,29529628-29529720,29529801-29529879,29529959-29530065,29530167-29530391	AT1G78490.1  CDS  gene_syn CYP708A3, CYTOCHROME P450, FAMILY 708, SUBFAMILY A, POLYPEPTIDE 3, T30F21.17, T30F21_17  gene CYP708A3  function member of CYP708A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP708A3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP708A3; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP708A2; oxygen binding / thalianol hydroxylase (TAIR:AT5G48000.6); Has 21526 Blast hits to 21488 proteins in 1210 species: Archae - 37; Bacteria - 3466; Metazoa - 9265; Fungi - 3154; Plants - 4380; Viruses - 0; Other Eukaryotes - 1224 (source: NCBI BLink).  protein_id AT1G78490.1p  transcript_id AT1G78490.1  protein_id AT1G78490.1p  transcript_id AT1G78490.1  
At1g78500	chr1:029531646	0.0	W/29531646-29531849,29531995-29532180,29532278-29532367,29532490-29532693,29532800-29532884,29532997-29533163,29533234-29533425,29533505-29533618,29533706-29533960,29534062-29534160,29534236-29534292,29534364-29534410,29534500-29534986,29535061-29535177	AT1G78500.1  CDS  gene_syn T30F21.16, T30F21_16  function Encodes a protein with pentacyclic triterpene synthase activity. In addition to the compounds lupeol, & 945;-amyrin and bauerenol, this enzyme was also shown to produce two <i>seco</i>-triterpenes: & 945;- and & 946;-<i>seco</i>-amyrin.  go_component cellular_component|GO:0005575||ND  go_process pentacyclic triterpenoid biosynthetic process|GO:0019745||ISS  go_function catalytic activity|GO:0003824||ISS  go_function oxidosqualene cyclase activity|GO:0031559|17263431|IDA  go_function lupeol synthase activity|GO:0042299|11247608|TAS  product pentacyclic triterpene synthase, putative  note pentacyclic triterpene synthase, putative; FUNCTIONS IN: oxidosqualene cyclase activity, lupeol synthase activity, catalytic activity; INVOLVED IN: pentacyclic triterpenoid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl; CONTAINS InterPro DOMAIN/s: Terpene synthase, conserved site (InterPro:IPR002365), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Squalene cyclase (InterPro:IPR018333), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: BARS1 (BARUOL SYNTHASE 1); baruol synthase/ catalytic (TAIR:AT4G15370.1); Has 1297 Blast hits to 1252 proteins in 360 species: Archae - 2; Bacteria - 525; Metazoa - 76; Fungi - 160; Plants - 337; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink).  protein_id AT1G78500.1p  transcript_id AT1G78500.1  protein_id AT1G78500.1p  transcript_id AT1G78500.1  
At1g78510	chr1:029536973	0.0	C/29536973-29537042,29536698-29536822,29536477-29536604,29536269-29536372,29536057-29536184,29535410-29535958	AT1G78510.2  CDS  gene_syn SPS1, T30F21.15, T30F21_15, solanesyl diphosphate synthase 1  gene SPS1  function Encodes a protein with solanesyl diphosphate synthase activity.  go_component endoplasmic reticulum|GO:0005783|15653808|IDA  go_process ubiquinone biosynthetic process|GO:0006744|15653808|IGI  go_function trans-octaprenyltranstransferase activity|GO:0050347|15653808|IGI  product SPS1 (solanesyl diphosphate synthase 1); trans-octaprenyltranstransferase  note solanesyl diphosphate synthase 1 (SPS1); FUNCTIONS IN: trans-octaprenyltranstransferase activity; INVOLVED IN: ubiquinone biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Solanesyl diphosphate synthase (InterPro:IPR014120), Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: SPS2 (Solanesyl diphosphate synthase 2); trans-octaprenyltranstransferase (TAIR:AT1G17050.1); Has 11573 Blast hits to 11555 proteins in 1676 species: Archae - 213; Bacteria - 4924; Metazoa - 385; Fungi - 412; Plants - 265; Viruses - 0; Other Eukaryotes - 5374 (source: NCBI BLink).  protein_id AT1G78510.2p  transcript_id AT1G78510.2  protein_id AT1G78510.2p  transcript_id AT1G78510.2  
At1g78510	chr1:029536977	0.0	C/29536977-29537163,29536698-29536822,29536477-29536604,29536269-29536372,29536057-29536184,29535410-29535958	AT1G78510.1  CDS  gene_syn SPS1, T30F21.15, T30F21_15, solanesyl diphosphate synthase 1  gene SPS1  function Encodes a protein with solanesyl diphosphate synthase activity.  go_component endoplasmic reticulum|GO:0005783|15653808|IDA  go_process ubiquinone biosynthetic process|GO:0006744|15653808|IGI  go_function trans-octaprenyltranstransferase activity|GO:0050347|15653808|IGI  product SPS1 (solanesyl diphosphate synthase 1); trans-octaprenyltranstransferase  note solanesyl diphosphate synthase 1 (SPS1); FUNCTIONS IN: trans-octaprenyltranstransferase activity; INVOLVED IN: ubiquinone biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Solanesyl diphosphate synthase (InterPro:IPR014120), Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: SPS2 (Solanesyl diphosphate synthase 2); trans-octaprenyltranstransferase (TAIR:AT1G17050.1); Has 11573 Blast hits to 11555 proteins in 1676 species: Archae - 213; Bacteria - 4924; Metazoa - 385; Fungi - 412; Plants - 265; Viruses - 0; Other Eukaryotes - 5374 (source: NCBI BLink).  protein_id AT1G78510.1p  transcript_id AT1G78510.1  protein_id AT1G78510.1p  transcript_id AT1G78510.1  
At1g78520	chr1:029538602	0.0	C/29538602-29538656,29538473-29538501,29538152-29538389,29537976-29538001	AT1G78520.1  CDS  gene_syn T30F21.22, T30F21_22  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family protein 17 (TAIR:AT2G43670.1); Has 747 Blast hits to 711 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 747; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G78520.1p  transcript_id AT1G78520.1  protein_id AT1G78520.1p  transcript_id AT1G78520.1  
At1g78530	chr1:029540546	0.0	C/29540546-29540681,29540116-29540463,29539792-29540034,29539570-29539703,29539274-29539480	AT1G78530.1  CDS  gene_syn T30F21.14, T30F21_14  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: FEI1 (FEI 1); ATP binding / kinase/ protein serine/threonine kinase (TAIR:AT1G31420.1); Has 85835 Blast hits to 84802 proteins in 3031 species: Archae - 56; Bacteria - 7781; Metazoa - 37372; Fungi - 6835; Plants - 18783; Viruses - 409; Other Eukaryotes - 14599 (source: NCBI BLink).  protein_id AT1G78530.1p  transcript_id AT1G78530.1  protein_id AT1G78530.1p  transcript_id AT1G78530.1  
At1g78540	chr1:029544416	0.0	C/29544416-29544574,29543794-29543985,29543502-29543711,29543320-29543394,29543159-29543236,29542898-29543059,29542450-29542752,29542136-29542365,29541523-29542023,29541356-29541433,29541244-29541262	AT1G78540.1  CDS  gene_syn ARABIDOPSIS THALIANA SH2 DOMAIN PROTEIN B, ATSHB, SH2 DOMAIN PROTEIN B, SHB, STAT-TYPE LINKER-SH2 DOMAIN FACTOR B, STATLB, T30F21.13, T30F21_13  gene SHB  function Encodes a protein that contains an SH2 domain. It can pull down a 120-kD tyrosine-phosphorylated protein in vitro. It is predicted to act as a transcription factor.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process signal transduction|GO:0007165||IEA  go_function transcription factor activity|GO:0003700||IEA  go_function signal transducer activity|GO:0004871||IEA  go_function protein binding|GO:0005515||IEA  product SHB (SH2 DOMAIN PROTEIN B); protein binding / signal transducer/ transcription factor  note SH2 DOMAIN PROTEIN B (SHB); FUNCTIONS IN: protein binding, transcription factor activity, signal transducer activity; INVOLVED IN: signal transduction, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: stem, root, flower, leaf; CONTAINS InterPro DOMAIN/s: SH2 motif (InterPro:IPR000980), STAT transcription factor, core (InterPro:IPR001217), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: SHA (SH2 DOMAIN PROTEIN A); protein binding / signal transducer/ transcription factor (TAIR:AT1G17040.1); Has 101 Blast hits to 99 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 59; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT1G78540.1p  transcript_id AT1G78540.1  protein_id AT1G78540.1p  transcript_id AT1G78540.1  
At1g78550	chr1:029546106	0.0	C/29546106-29546360,29545773-29546020,29545369-29545693,29545031-29545273	AT1G78550.1  CDS  gene_syn T30F21.12, T30F21_12  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, iron ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: SRG1 (SENESCENCE-RELATED GENE 1); oxidoreductase, acting on diphenols and related substances as donors, oxygen as acceptor / oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (TAIR:AT1G17020.1); Has 5936 Blast hits to 5906 proteins in 686 species: Archae - 0; Bacteria - 709; Metazoa - 115; Fungi - 612; Plants - 3098; Viruses - 0; Other Eukaryotes - 1402 (source: NCBI BLink).  protein_id AT1G78550.1p  transcript_id AT1G78550.1  protein_id AT1G78550.1p  transcript_id AT1G78550.1  
At1g78560	chr1:029548267	0.0	C/29548267-29548764,29547899-29547992,29547785-29547818,29547646-29547700,29547481-29547564,29547095-29547382,29546846-29546998	AT1G78560.1  CDS  gene_syn T30F21.11, T30F21_11  go_component chloroplast|GO:0009507|18431481|IDA  go_process sodium ion transport|GO:0006814||IEA  go_component membrane|GO:0016020||ISS  go_process sodium ion transport|GO:0006814||ISS  go_function transporter activity|GO:0005215||ISS  go_function bile acid:sodium symporter activity|GO:0008508||ISS  product bile acid:sodium symporter family protein  note bile acid:sodium symporter family protein; FUNCTIONS IN: transporter activity, bile acid:sodium symporter activity; INVOLVED IN: sodium ion transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bile acid:sodium symporter (InterPro:IPR002657); BEST Arabidopsis thaliana protein match is: bile acid:sodium symporter family protein (TAIR:AT2G26900.1); Has 3321 Blast hits to 3315 proteins in 563 species: Archae - 42; Bacteria - 1259; Metazoa - 390; Fungi - 0; Plants - 166; Viruses - 0; Other Eukaryotes - 1464 (source: NCBI BLink).  protein_id AT1G78560.1p  transcript_id AT1G78560.1  protein_id AT1G78560.1p  transcript_id AT1G78560.1  
At1g78570	chr1:029550110	0.0	W/29550110-29551675,29551764-29552207	AT1G78570.1  CDS  gene_syn ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, ATRHM1, REPRESSOR OF LRX1 1, RHAMNOSE BIOSYNTHESIS 1, RHM1, ROL1, T30F21.10, T30F21_10  gene RHM1  function Encodes a UDP-L-Rhamnose synthase involved in the biosynthesis of rhamnose, a major monosaccharide component of pectin. Catalyzes the conversion of UDP-D-Glc to UDP-L-Rha. The dehydrogenase domain of RHM1 was shown to catalyze the conversion of UDP-D-Glc to the reaction intermediate UDP-4-keto-6-deoxy-D-Glc using recombinant protein assay but the activity of the full-length protein was not determined as it could not be expressed in <i>E. coli</i>.  go_component soluble fraction|GO:0005625|17190829|IDA  go_process nucleotide-sugar metabolic process|GO:0009225||ISS  go_process UDP-rhamnose biosynthetic process|GO:0010253|16766693|IMP  go_process UDP-rhamnose biosynthetic process|GO:0010253|17190829|IDA  go_process auxin efflux|GO:0010315|18567791|IMP  go_process flavonol biosynthetic process|GO:0051555|18567791|IMP  go_function catalytic activity|GO:0003824||ISS  go_function UDP-L-rhamnose synthase activity|GO:0010280|17190829|IDA  go_function UDP-glucose 4,6-dehydratase activity|GO:0050377|16766693|IDA  product RHM1 (RHAMNOSE BIOSYNTHESIS 1); UDP-L-rhamnose synthase/ UDP-glucose 4,6-dehydratase/ catalytic  note RHAMNOSE BIOSYNTHESIS 1 (RHM1); FUNCTIONS IN: UDP-L-rhamnose synthase activity, UDP-glucose 4,6-dehydratase activity, catalytic activity; INVOLVED IN: flavonol biosynthetic process, UDP-rhamnose biosynthetic process, auxin efflux, nucleotide-sugar metabolic process; LOCATED IN: soluble fraction; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: RHM3 (RHAMNOSE BIOSYNTHESIS 3); UDP-L-rhamnose synthase/ catalytic (TAIR:AT3G14790.1); Has 39051 Blast hits to 38881 proteins in 1785 species: Archae - 541; Bacteria - 17680; Metazoa - 1013; Fungi - 378; Plants - 885; Viruses - 91; Other Eukaryotes - 18463 (source: NCBI BLink).  protein_id AT1G78570.1p  transcript_id AT1G78570.1  protein_id AT1G78570.1p  transcript_id AT1G78570.1  
At1g78580	chr1:029557101	0.0	C/29557101-29557482,29556874-29556971,29556355-29556743,29555864-29555978,29555639-29555740,29555351-29555501,29555105-29555193,29554745-29554793,29554537-29554637,29554265-29554452,29554047-29554164,29553774-29553950,29553563-29553685,29553393-29553480,29553180-29553310,29552997-29553095,29552495-29552923	AT1G78580.1  CDS  gene_syn ATTPS1, T30F21.9, T30F21_9, TPS1, TREHALOSE-6-PHOSPHATE SYNTHASE, TREHALOSE-6-PHOSPHATE SYNTHASE 1  gene ATTPS1  function Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain but no trehalose phosphatase (TPP)-like domain. ATTPS1 is able to complement yeast tps1 mutants in vivo. The gene product modulates cell growth but not cell differentiation by determining cell wall deposition and cell division.  go_process trehalose metabolic process|GO:0005991|15667325|TAS  go_process embryonic development|GO:0009790|15667326|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|16553896|IMP  go_process plant-type cell wall biogenesis|GO:0009832|16553896|IMP  go_process sugar mediated signaling|GO:0010182|15667325|IMP  go_process cell division|GO:0051301|16553896|IMP  go_function alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity|GO:0003825|11520870|IGI  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product ATTPS1 (TREHALOSE-6-PHOSPHATE SYNTHASE); alpha,alpha-trehalose-phosphate synthase (UDP-forming)/ transferase, transferring glycosyl groups  note TREHALOSE-6-PHOSPHATE SYNTHASE (ATTPS1); FUNCTIONS IN: transferase activity, transferring glycosyl groups, alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity; INVOLVED IN: in 6 processes; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha,alpha-trehalose-phosphate synthase (InterPro:IPR012766), Glycosyl transferase, family 20 (InterPro:IPR001830), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: ATTPS2; alpha,alpha-trehalose-phosphate synthase (UDP-forming)/ transferase, transferring glycosyl groups (TAIR:AT1G16980.1); Has 6076 Blast hits to 2747 proteins in 640 species: Archae - 33; Bacteria - 1049; Metazoa - 1711; Fungi - 568; Plants - 206; Viruses - 0; Other Eukaryotes - 2509 (source: NCBI BLink).  protein_id AT1G78580.1p  transcript_id AT1G78580.1  protein_id AT1G78580.1p  transcript_id AT1G78580.1  
At1g78590	chr1:029564343	0.0	W/29564343-29564435,29564752-29564997,29565077-29565157,29565272-29565423,29565747-29566128	AT1G78590.1  CDS  gene_syn ARABIDOPSIS THALIANA NADH KINASE 3, ATNADK-3, NAD(H) KINASE 3, NADH KINASE, NADK3, T30F21.8, T30F21_8  gene NADK3  function Encodes a NADH kinase which can synthesize NADPH from NADH; also utilizes NAD+ as substrate although NADH is the preferred substrate.  go_component cytoplasm|GO:0005737|16856986|IDA  go_component cytosol|GO:0005829|15347288|IDA  go_process NADP biosynthetic process|GO:0006741|15347288|TAS  go_process NADP biosynthetic process|GO:0006741|16856986|IMP  go_process pyridine nucleotide biosynthetic process|GO:0019363||ISS  go_function NAD+ kinase activity|GO:0003951|15347288|IDA  go_function NAD+ kinase activity|GO:0003951||ISS  go_function NADH kinase activity|GO:0042736|15347288|IDA  product NADK3 (NAD(H) KINASE 3); NAD+ kinase/ NADH kinase  note NAD(H) KINASE 3 (NADK3); FUNCTIONS IN: NAD+ kinase activity, NADH kinase activity; INVOLVED IN: NADP biosynthetic process, pyridine nucleotide biosynthetic process; LOCATED IN: cytosol, cytoplasm; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: ATP-NAD kinase, PpnK-type, alpha/beta (InterPro:IPR017438), ATP-NAD kinase, PpnK-type (InterPro:IPR016064), ATP-NAD/AcoX kinase (InterPro:IPR002504); Has 1951 Blast hits to 1951 proteins in 643 species: Archae - 118; Bacteria - 1046; Metazoa - 90; Fungi - 20; Plants - 22; Viruses - 0; Other Eukaryotes - 655 (source: NCBI BLink).  protein_id AT1G78590.1p  transcript_id AT1G78590.1  protein_id AT1G78590.1p  transcript_id AT1G78590.1  
At1g78600	chr1:029567370	0.0	W/29567370-29567552,29567748-29568200,29568399-29568662	AT1G78600.1  CDS  gene_syn LIGHT-REGULATED ZINC FINGER PROTEIN 1, LZF1, SALT TOLERANCE HOMOLOG 3, STH3, T30F21.7, T30F21_7  gene LZF1  go_component nuclear speck|GO:0016607|18796637|IDA  go_process chloroplast organization|GO:0009658|18182030|IMP  go_process anthocyanin biosynthetic process|GO:0009718|18182030|IMP  go_process regulation of photomorphogenesis|GO:0010099|18796637|IGI  go_process chlorophyll biosynthetic process|GO:0015995|18182030|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product LZF1 (LIGHT-REGULATED ZINC FINGER PROTEIN 1); transcription factor/ zinc ion binding  note LIGHT-REGULATED ZINC FINGER PROTEIN 1 (LZF1); FUNCTIONS IN: transcription factor activity, zinc ion binding; INVOLVED IN: chlorophyll biosynthetic process, chloroplast organization, anthocyanin biosynthetic process, regulation of photomorphogenesis, regulation of transcription; LOCATED IN: nuclear speck; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: STO (SALT TOLERANCE); DNA binding / protein binding / transcription factor/ zinc ion binding (TAIR:AT1G06040.2); Has 1252 Blast hits to 916 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 0; Plants - 1143; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).  protein_id AT1G78600.1p  transcript_id AT1G78600.1  protein_id AT1G78600.1p  transcript_id AT1G78600.1  
At1g78610	chr1:029570487	0.0	C/29570487-29572126,29570269-29570392,29569899-29570192,29569624-29569826,29569226-29569535	AT1G78610.1  CDS  gene_syn MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 6, MSL6, T30F21.6, T30F21_6  gene MSL6  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020||ISS  product MSL6 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 6)  note MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 6 (MSL6); LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Membrane protein, At2g17000, predicted (InterPro:IPR016688), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: MSL4 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 4) (TAIR:AT1G53470.1); Has 2379 Blast hits to 2374 proteins in 656 species: Archae - 97; Bacteria - 1651; Metazoa - 0; Fungi - 121; Plants - 85; Viruses - 0; Other Eukaryotes - 425 (source: NCBI BLink).  protein_id AT1G78610.1p  transcript_id AT1G78610.1  protein_id AT1G78610.1p  transcript_id AT1G78610.1  
At1g78620	chr1:029575309	0.0	C/29575309-29575758,29574728-29574981,29574457-29574580,29574239-29574343,29573862-29573957	AT1G78620.2  CDS  gene_syn T30F21.5, T30F21_5  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast inner membrane|GO:0009706|12177442|IDA  product integral membrane family protein  note integral membrane family protein; LOCATED IN: chloroplast, chloroplast inner membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF92, transmembrane (InterPro:IPR002794); Has 640 Blast hits to 640 proteins in 198 species: Archae - 89; Bacteria - 170; Metazoa - 53; Fungi - 42; Plants - 43; Viruses - 0; Other Eukaryotes - 243 (source: NCBI BLink).  protein_id AT1G78620.2p  transcript_id AT1G78620.2  protein_id AT1G78620.2p  transcript_id AT1G78620.2  
At1g78620	chr1:029575336	0.0	C/29575336-29575758,29574728-29574981,29574457-29574580,29574239-29574343,29573862-29573957	AT1G78620.1  CDS  gene_syn T30F21.5, T30F21_5  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast inner membrane|GO:0009706|12177442|IDA  product integral membrane family protein  note integral membrane family protein; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF92, transmembrane (InterPro:IPR002794); Has 672 Blast hits to 672 proteins in 212 species: Archae - 93; Bacteria - 172; Metazoa - 70; Fungi - 44; Plants - 45; Viruses - 0; Other Eukaryotes - 248 (source: NCBI BLink).  protein_id AT1G78620.1p  transcript_id AT1G78620.1  protein_id AT1G78620.1p  transcript_id AT1G78620.1  
At1g78630	chr1:029575997	0.0	W/29575997-29576248,29576557-29576742,29576943-29577113,29577290-29577406	AT1G78630.1  CDS  gene_syn T30F21.4, T30F21_4, emb1473, embryo defective 1473  gene emb1473  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function structural constituent of ribosome|GO:0003735||ISS  product emb1473 (embryo defective 1473); structural constituent of ribosome  note embryo defective 1473 (emb1473); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: embryonic development ending in seed dormancy, translation; LOCATED IN: thylakoid, ribosome, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13, bacterial-type (InterPro:IPR005823), Ribosomal protein L13 (InterPro:IPR005822); BEST Arabidopsis thaliana protein match is: ribosomal protein L13 family protein (TAIR:AT3G01790.2); Has 5936 Blast hits to 5936 proteins in 1604 species: Archae - 178; Bacteria - 2843; Metazoa - 297; Fungi - 195; Plants - 154; Viruses - 0; Other Eukaryotes - 2269 (source: NCBI BLink).  protein_id AT1G78630.1p  transcript_id AT1G78630.1  protein_id AT1G78630.1p  transcript_id AT1G78630.1  
At1g78640	chr1:029581226	0.0	C/29581226-29581988,29580378-29580491,29579715-29580301	AT1G78640.1  CDS  gene_syn T30F21.3, T30F21_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT2G33720.1); Has 30 Blast hits to 18 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G78640.1p  transcript_id AT1G78640.1  protein_id AT1G78640.1p  transcript_id AT1G78640.1  
At1g78650	chr1:029582987	0.0	W/29582987-29583055,29583303-29583358,29583456-29583580,29583847-29584006,29584097-29584512,29584620-29585078,29585176-29585281,29585370-29585508	AT1G78650.1  CDS  gene_syn POLD3, T30F21.2, T30F21_2  gene POLD3  function Similar to DNA polymerase delta (POLD3), which in other organism was shown to be involved in the elongation of DNA replication.  go_component cellular_component|GO:0005575||ND  go_process DNA strand elongation during DNA replication|GO:0006271|17556508|TAS  go_function DNA-directed DNA polymerase activity|GO:0003887|17556508|ISS  product POLD3; DNA-directed DNA polymerase  note POLD3; FUNCTIONS IN: DNA-directed DNA polymerase activity; INVOLVED IN: DNA strand elongation during DNA replication; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 2292 Blast hits to 1706 proteins in 241 species: Archae - 0; Bacteria - 134; Metazoa - 1036; Fungi - 338; Plants - 92; Viruses - 24; Other Eukaryotes - 668 (source: NCBI BLink).  protein_id AT1G78650.1p  transcript_id AT1G78650.1  protein_id AT1G78650.1p  transcript_id AT1G78650.1  
At1g78660	chr1:029585901	0.0	W/29585901-29585955,29586066-29586337,29586431-29586517,29586594-29586683,29586905-29586999,29587084-29587144,29587337-29587426,29587519-29587581,29587693-29587781,29587873-29587965,29588066-29588117	AT1G78660.1  CDS  gene_syn ATGGH1, GAMMA-GLUTAMYL HYDROLASE 1, T30F21.1, T30F21_1  gene ATGGH1  function The Arabidopsis protein AtGGH1 is a gamma-glutamyl hydrolase cleaving pentaglutamates to yield di- and triglutamates. The enzyme is involved in the tetrahydrofolate metabolism and located to the vacuole.  go_component vacuole|GO:0005773|15961386|IDA  go_process tetrahydrofolylpolyglutamate metabolic process|GO:0046900|15961386|IDA  go_function omega peptidase activity|GO:0008242|15961386|IDA  product gamma-glutamyl hydrolase, putative / gamma-Glu-X carboxypeptidase, putative / conjugase, putative  note GAMMA-GLUTAMYL HYDROLASE 1 (ATGGH1); FUNCTIONS IN: omega peptidase activity; INVOLVED IN: tetrahydrofolylpolyglutamate metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C26, gamma-glutamyl hydrolase (InterPro:IPR015527), Peptidase C26 (InterPro:IPR011697); BEST Arabidopsis thaliana protein match is: ATGGH2 (gamma-glutamyl hydrolase 2); omega peptidase (TAIR:AT1G78680.1); Has 300 Blast hits to 297 proteins in 74 species: Archae - 0; Bacteria - 26; Metazoa - 165; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT1G78660.1p  transcript_id AT1G78660.1  protein_id AT1G78660.1p  transcript_id AT1G78660.1  
At1g78660	chr1:029585901	0.0	W/29585901-29585955,29586066-29586337,29586431-29586517,29586594-29586683,29586905-29586999,29587084-29587144,29587337-29587426,29587519-29587581,29587693-29587781,29587873-29587965,29588066-29588117	AT1G78660.3  CDS  gene_syn ATGGH1, GAMMA-GLUTAMYL HYDROLASE 1, T30F21.1, T30F21_1  gene ATGGH1  function The Arabidopsis protein AtGGH1 is a gamma-glutamyl hydrolase cleaving pentaglutamates to yield di- and triglutamates. The enzyme is involved in the tetrahydrofolate metabolism and located to the vacuole.  go_component vacuole|GO:0005773|15961386|IDA  go_process tetrahydrofolylpolyglutamate metabolic process|GO:0046900|15961386|IDA  go_function omega peptidase activity|GO:0008242|15961386|IDA  product gamma-glutamyl hydrolase, putative / gamma-Glu-X carboxypeptidase, putative / conjugase, putative  note GAMMA-GLUTAMYL HYDROLASE 1 (ATGGH1); FUNCTIONS IN: omega peptidase activity; INVOLVED IN: tetrahydrofolylpolyglutamate metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C26, gamma-glutamyl hydrolase (InterPro:IPR015527), Peptidase C26 (InterPro:IPR011697); BEST Arabidopsis thaliana protein match is: ATGGH2 (gamma-glutamyl hydrolase 2); omega peptidase (TAIR:AT1G78680.1); Has 300 Blast hits to 297 proteins in 74 species: Archae - 0; Bacteria - 26; Metazoa - 165; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT1G78660.3p  transcript_id AT1G78660.3  protein_id AT1G78660.3p  transcript_id AT1G78660.3  
At1g78660	chr1:029586014	0.0	W/29586014-29586337,29586431-29586517,29586594-29586683,29586905-29586999,29587084-29587144,29587337-29587426,29587519-29587581,29587693-29587781,29587873-29587965,29588066-29588117	AT1G78660.2  CDS  gene_syn ATGGH1, GAMMA-GLUTAMYL HYDROLASE 1, T30F21.1, T30F21_1  gene ATGGH1  function The Arabidopsis protein AtGGH1 is a gamma-glutamyl hydrolase cleaving pentaglutamates to yield di- and triglutamates. The enzyme is involved in the tetrahydrofolate metabolism and located to the vacuole.  go_component vacuole|GO:0005773|15961386|IDA  go_process tetrahydrofolylpolyglutamate metabolic process|GO:0046900|15961386|IDA  go_function omega peptidase activity|GO:0008242|15961386|IDA  product gamma-glutamyl hydrolase, putative / gamma-Glu-X carboxypeptidase, putative / conjugase, putative  note GAMMA-GLUTAMYL HYDROLASE 1 (ATGGH1); FUNCTIONS IN: omega peptidase activity; INVOLVED IN: tetrahydrofolylpolyglutamate metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C26, gamma-glutamyl hydrolase (InterPro:IPR015527), Peptidase C26 (InterPro:IPR011697); BEST Arabidopsis thaliana protein match is: ATGGH2 (gamma-glutamyl hydrolase 2); omega peptidase (TAIR:AT1G78680.1); Has 300 Blast hits to 297 proteins in 74 species: Archae - 0; Bacteria - 26; Metazoa - 165; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT1G78660.2p  transcript_id AT1G78660.2  protein_id AT1G78660.2p  transcript_id AT1G78660.2  
At1g78670	chr1:029591053	0.0	W/29591053-29591409,29591642-29591728,29591824-29591913,29592085-29592179,29592259-29592319,29592531-29592620,29592712-29592774,29592906-29592994,29593080-29593172,29593286-29593319	AT1G78670.1  CDS  gene_syn ATGGH3, F9K20.29, F9K20_29, gamma-glutamyl hydrolase 3  gene ATGGH3  go_component vacuole|GO:0005773|15539469|IDA  go_process glutamine metabolic process|GO:0006541||IEA  go_function catalytic activity|GO:0003824||IEA  go_function omega peptidase activity|GO:0008242||IEA  go_function hydrolase activity|GO:0016787||IEA  product ATGGH3 (gamma-glutamyl hydrolase 3); catalytic/ hydrolase/ omega peptidase  note gamma-glutamyl hydrolase 3 (ATGGH3); FUNCTIONS IN: hydrolase activity, omega peptidase activity, catalytic activity; INVOLVED IN: glutamine metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C26, gamma-glutamyl hydrolase (InterPro:IPR015527), Peptidase C26 (InterPro:IPR011697); BEST Arabidopsis thaliana protein match is: gamma-glutamyl hydrolase, putative / gamma-Glu-X carboxypeptidase, putative / conjugase, putative (TAIR:AT1G78660.2); Has 274 Blast hits to 271 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 163; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT1G78670.1p  transcript_id AT1G78670.1  protein_id AT1G78670.1p  transcript_id AT1G78670.1  
At1g78680	chr1:029593933	0.0	W/29593933-29594256,29594347-29594433,29594519-29594608,29594725-29594819,29594912-29594972,29595200-29595289,29595373-29595435,29595562-29595650,29595785-29595877,29595986-29596037	AT1G78680.1  CDS  gene_syn ATGGH2, gamma-glutamyl hydrolase 2  gene ATGGH2  function The Arabidopsis protein AtGGH2 is a gamma-glutamyl hydrolase acting specifically on monoglutamates. The enzyme is involved in the tetrahydrofolate metabolism and located to the vacuole.  go_component vacuole|GO:0005773|15539469|IDA  go_component vacuole|GO:0005773|15961386|IDA  go_process tetrahydrofolylpolyglutamate metabolic process|GO:0046900|15961386|IDA  go_function omega peptidase activity|GO:0008242|15961386|IDA  product ATGGH2 (gamma-glutamyl hydrolase 2); omega peptidase  note gamma-glutamyl hydrolase 2 (ATGGH2); FUNCTIONS IN: omega peptidase activity; INVOLVED IN: tetrahydrofolylpolyglutamate metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C26, gamma-glutamyl hydrolase (InterPro:IPR015527), Peptidase C26 (InterPro:IPR011697); BEST Arabidopsis thaliana protein match is: gamma-glutamyl hydrolase, putative / gamma-Glu-X carboxypeptidase, putative / conjugase, putative (TAIR:AT1G78660.2); Has 294 Blast hits to 291 proteins in 71 species: Archae - 3; Bacteria - 19; Metazoa - 161; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT1G78680.1p  transcript_id AT1G78680.1  protein_id AT1G78680.1p  transcript_id AT1G78680.1  
At1g78690	chr1:029597002	0.0	W/29597002-29597210,29597316-29597446,29597625-29597710,29597792-29597929,29598119-29598409	AT1G78690.1  CDS  gene_syn F9K20.27, F9K20_27  go_process metabolic process|GO:0008152||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_process metabolic process|GO:0008152||ISS  go_function acyltransferase activity|GO:0008415||ISS  product phospholipid/glycerol acyltransferase family protein  note phospholipid/glycerol acyltransferase family protein; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123), Tafazzin (InterPro:IPR000872); BEST Arabidopsis thaliana protein match is: phospholipid/glycerol acyltransferase family protein (TAIR:AT3G05510.2); Has 677 Blast hits to 667 proteins in 233 species: Archae - 0; Bacteria - 232; Metazoa - 222; Fungi - 86; Plants - 42; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT1G78690.1p  transcript_id AT1G78690.1  protein_id AT1G78690.1p  transcript_id AT1G78690.1  
At1g78700	chr1:029599854	0.0	W/29599854-29600069,29600778-29601539	AT1G78700.1  CDS  gene_syn F9K20.26, F9K20_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transcription regulator activity|GO:0030528|11970900|TAS  product brassinosteroid signalling positive regulator-related  note brassinosteroid signalling positive regulator-related; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BZR1, transcriptional repressor (InterPro:IPR008540); BEST Arabidopsis thaliana protein match is: brassinosteroid signalling positive regulator-related (TAIR:AT4G18890.1); Has 3132 Blast hits to 468 proteins in 84 species: Archae - 0; Bacteria - 18; Metazoa - 271; Fungi - 99; Plants - 190; Viruses - 0; Other Eukaryotes - 2554 (source: NCBI BLink).  protein_id AT1G78700.1p  transcript_id AT1G78700.1  protein_id AT1G78700.1p  transcript_id AT1G78700.1  
At1g78710	chr1:029601499	0.0	W/29601499-29601535,29602766-29602979,29603474-29603645,29603726-29603904,29604260-29604557	AT1G78710.2  CDS  gene_syn F9K20.25, F9K20_25  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29050.1).  protein_id AT1G78710.2p  transcript_id AT1G78710.2  protein_id AT1G78710.2p  transcript_id AT1G78710.2  
At1g78710	chr1:029602708	0.0	W/29602708-29602979,29603474-29603645,29603726-29603904,29604010-29604168,29604260-29604557	AT1G78710.1  CDS  gene_syn F9K20.25, F9K20_25  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31110.2); Has 710 Blast hits to 699 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 708; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G78710.1p  transcript_id AT1G78710.1  protein_id AT1G78710.1p  transcript_id AT1G78710.1  
At1g78720	chr1:029605629	0.0	W/29605629-29605972,29606065-29606292,29606377-29606731,29606816-29606940,29607025-29607160,29607271-29607510	AT1G78720.1  CDS  gene_syn F9K20.24, F9K20_24  go_component membrane|GO:0016020||IEA  go_process protein transport|GO:0015031||IEA  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||IEA  go_component membrane|GO:0016020||ISS  go_process protein secretion|GO:0009306||ISS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product protein transport protein sec61, putative  note protein transport protein sec61, putative; FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein secretion, protein transport; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.10 ten leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: SecY protein (InterPro:IPR002208); BEST Arabidopsis thaliana protein match is: protein transport protein sec61, putative (TAIR:AT2G34250.2); Has 2939 Blast hits to 2933 proteins in 1155 species: Archae - 193; Bacteria - 1620; Metazoa - 225; Fungi - 153; Plants - 67; Viruses - 0; Other Eukaryotes - 681 (source: NCBI BLink).  protein_id AT1G78720.1p  transcript_id AT1G78720.1  protein_id AT1G78720.1p  transcript_id AT1G78720.1  
At1g78730	chr1:029609037	0.0	C/29609037-29609441,29608465-29608950,29608256-29608354,29607840-29608112	AT1G78730.1  CDS  gene_syn F9K20.23, F9K20_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: FBD1 (FBD-ASSOCIATED F-BOX PROTEIN) (TAIR:AT4G13985.1); Has 1123 Blast hits to 1093 proteins in 12 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 2; Plants - 1118; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G78730.1p  transcript_id AT1G78730.1  protein_id AT1G78730.1p  transcript_id AT1G78730.1  
At1g78740	chr1:029610704	0.0	C/29610704-29611438,29610494-29610622	AT1G78740.1  CDS  gene_syn F9K20.22, F9K20_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G78750.1); Has 495 Blast hits to 486 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 495; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G78740.1p  transcript_id AT1G78740.1  protein_id AT1G78740.1p  transcript_id AT1G78740.1  
At1g78750	chr1:029613733	0.0	C/29613733-29614695,29613508-29613648,29613122-29613394	AT1G78750.1  CDS  gene_syn F9K20.21, F9K20_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, inflorescence meristem, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G69630.1); Has 1360 Blast hits to 1316 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 1351; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G78750.1p  transcript_id AT1G78750.1  protein_id AT1G78750.1p  transcript_id AT1G78750.1  
At1g78760	chr1:029615815	0.0	C/29615815-29616738,29615588-29615722,29615174-29615473	AT1G78760.1  CDS  gene_syn F9K20.20, F9K20_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G69630.1); Has 1420 Blast hits to 1380 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1419; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G78760.1p  transcript_id AT1G78760.1  protein_id AT1G78760.1p  transcript_id AT1G78760.1  
At1g78770	chr1:029617421	0.0	W/29617421-29617666,29617791-29617925,29618090-29618163,29618421-29618460,29618640-29618685,29618800-29618879,29619037-29619212,29619320-29619445,29619733-29619807,29619907-29620032,29620191-29620260,29620357-29620439,29620573-29620686,29620777-29620876,29620981-29621016,29621169-29621273	AT1G78770.1  CDS  gene_syn F9K20.19, F9K20_19  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process cell cycle|GO:0007049||ISS  product cell division cycle family protein  note cell division cycle family protein; FUNCTIONS IN: binding; INVOLVED IN: cell cycle; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: SEC (secret agent); transferase, transferring glycosyl groups (TAIR:AT3G04240.1); Has 8496 Blast hits to 5575 proteins in 581 species: Archae - 357; Bacteria - 3063; Metazoa - 1834; Fungi - 308; Plants - 213; Viruses - 0; Other Eukaryotes - 2721 (source: NCBI BLink).  protein_id AT1G78770.1p  transcript_id AT1G78770.1  protein_id AT1G78770.1p  transcript_id AT1G78770.1  
At1g78780	chr1:029622078	0.0	C/29622078-29622153,29621699-29621997,29621447-29621602	AT1G78780.1  CDS  gene_syn F9K20.18, F9K20_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pathogenesis-related family protein  note pathogenesis-related family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; Has 132 Blast hits to 131 proteins in 48 species: Archae - 0; Bacteria - 39; Metazoa - 16; Fungi - 25; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G78780.1p  transcript_id AT1G78780.1  protein_id AT1G78780.1p  transcript_id AT1G78780.1  
At1g78780	chr1:029622078	0.0	C/29622078-29622153,29621699-29621997,29621447-29621602	AT1G78780.3  CDS  gene_syn F9K20.18, F9K20_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pathogenesis-related family protein  note pathogenesis-related family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; Has 132 Blast hits to 131 proteins in 48 species: Archae - 0; Bacteria - 39; Metazoa - 16; Fungi - 25; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G78780.3p  transcript_id AT1G78780.3  protein_id AT1G78780.3p  transcript_id AT1G78780.3  
At1g78780	chr1:029622303	0.0	C/29622303-29622431,29622078-29622210,29621699-29621988,29621447-29621602	AT1G78780.4  CDS  gene_syn F9K20.18, F9K20_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pathogenesis-related family protein  note pathogenesis-related family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; Has 135 Blast hits to 134 proteins in 48 species: Archae - 0; Bacteria - 39; Metazoa - 16; Fungi - 25; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G78780.4p  transcript_id AT1G78780.4  protein_id AT1G78780.4p  transcript_id AT1G78780.4  
At1g78780	chr1:029622303	0.0	C/29622303-29622431,29622078-29622210,29621699-29621997,29621447-29621602	AT1G78780.2  CDS  gene_syn F9K20.18, F9K20_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pathogenesis-related family protein  note pathogenesis-related family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; Has 135 Blast hits to 134 proteins in 48 species: Archae - 0; Bacteria - 39; Metazoa - 16; Fungi - 25; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G78780.2p  transcript_id AT1G78780.2  protein_id AT1G78780.2p  transcript_id AT1G78780.2  
At1g78790	chr1:029624759	0.0	C/29624759-29624785,29624612-29624660,29624488-29624528,29624261-29624300,29623930-29624033	AT1G78790.2  CDS  gene_syn F9K20.17, F9K20_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2008 (InterPro:IPR018552); Has 12 Blast hits to 12 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G78790.2p  transcript_id AT1G78790.2  protein_id AT1G78790.2p  transcript_id AT1G78790.2  
At1g78790	chr1:029624759	0.0	C/29624759-29624785,29624612-29624660,29624488-29624528,29624261-29624300,29624125-29624178,29623930-29624033	AT1G78790.1  CDS  gene_syn F9K20.17, F9K20_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2008 (InterPro:IPR018552); Has 38 Blast hits to 38 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G78790.1p  transcript_id AT1G78790.1  protein_id AT1G78790.1p  transcript_id AT1G78790.1  
At1g78800	chr1:029627881	0.0	C/29627881-29627941,29627516-29627632,29627147-29627340,29626961-29627066,29626734-29626881,29626498-29626619,29626239-29626405,29625859-29626155	AT1G78800.1  CDS  gene_syn F9K20.16, F9K20_16  go_process biosynthetic process|GO:0009058||IEA  go_component cellular_component|GO:0005575||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyl transferase family 1 protein  note glycosyl transferase family 1 protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: SUS5; UDP-glycosyltransferase/ sucrose synthase (TAIR:AT5G37180.1); Has 9928 Blast hits to 9895 proteins in 1204 species: Archae - 399; Bacteria - 5805; Metazoa - 243; Fungi - 183; Plants - 319; Viruses - 0; Other Eukaryotes - 2979 (source: NCBI BLink).  protein_id AT1G78800.1p  transcript_id AT1G78800.1  protein_id AT1G78800.1p  transcript_id AT1G78800.1  
At1g78810	chr1:029629680	0.0	C/29629680-29630510,29628835-29629377,29628688-29628756	AT1G78810.2  CDS  gene_syn F9K20.15, F9K20_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 48 Blast hits to 33 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 2; Plants - 39; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G78810.2p  transcript_id AT1G78810.2  protein_id AT1G78810.2p  transcript_id AT1G78810.2  
At1g78810	chr1:029629680	0.0	C/29629680-29630510,29628835-29629377,29628693-29628756,29628538-29628545	AT1G78810.1  CDS  gene_syn F9K20.15, F9K20_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 48 Blast hits to 33 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 2; Plants - 39; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G78810.1p  transcript_id AT1G78810.1  protein_id AT1G78810.1p  transcript_id AT1G78810.1  
At1g78815	chr1:029632054	0.0	C/29632054-29632641	AT1G78815.1  CDS  gene_syn LIGHT SENSITIVE HYPOCOTYLS 7, LSH7  gene LSH7  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product LSH7 (LIGHT SENSITIVE HYPOCOTYLS 7)  note LIGHT SENSITIVE HYPOCOTYLS 7 (LSH7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: inflorescence meristem, hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: LSH8 (LIGHT SENSITIVE HYPOCOTYLS 8) (TAIR:AT1G16910.1); Has 183 Blast hits to 183 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G78815.1p  transcript_id AT1G78815.1  protein_id AT1G78815.1p  transcript_id AT1G78815.1  
At1g78820	chr1:029634401	0.0	C/29634401-29635768	AT1G78820.1  CDS  gene_syn F9K20.13, F9K20_13  go_component apoplast|GO:0048046|18538804|IDA  go_function sugar binding|GO:0005529||IEA  go_function sugar binding|GO:0005529||ISS  product curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein  note curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein; FUNCTIONS IN: sugar binding; LOCATED IN: apoplast; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609); BEST Arabidopsis thaliana protein match is: curculin-like (mannose-binding) lectin family protein (TAIR:AT1G78830.1); Has 1475 Blast hits to 1444 proteins in 66 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 1470; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G78820.1p  transcript_id AT1G78820.1  protein_id AT1G78820.1p  transcript_id AT1G78820.1  
At1g78830	chr1:029637141	0.0	C/29637141-29638508	AT1G78830.1  CDS  gene_syn F9K20.12, F9K20_12  go_component cell wall|GO:0005618|15593128|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function sugar binding|GO:0005529||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_function sugar binding|GO:0005529||ISS  product curculin-like (mannose-binding) lectin family protein  note curculin-like (mannose-binding) lectin family protein; FUNCTIONS IN: sugar binding; LOCATED IN: apoplast, cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480); BEST Arabidopsis thaliana protein match is: curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein (TAIR:AT1G78820.1); Has 1508 Blast hits to 1477 proteins in 66 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 1503; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G78830.1p  transcript_id AT1G78830.1  protein_id AT1G78830.1p  transcript_id AT1G78830.1  
At1g78840	chr1:029640485	0.0	C/29640485-29640817,29639910-29640452,29639685-29639825,29639290-29639592	AT1G78840.1  CDS  gene_syn F9K20.11, F9K20_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, root; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G22670.1); Has 1159 Blast hits to 1138 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1155; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G78840.1p  transcript_id AT1G78840.1  protein_id AT1G78840.1p  transcript_id AT1G78840.1  
At1g78850	chr1:029642072	0.0	C/29642072-29643397	AT1G78850.1  CDS  gene_syn F9K20.10, F9K20_10  function curculin-like (mannose-binding) lectin family protein, low similarity to ser/thr protein kinase from Zea mays (GI:2598067); contains Pfam lectin (probable mannose binding) domain PF01453 but not the protein kinase domain of the Z. mays protein  go_component cell wall|GO:0005618|15593128|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function sugar binding|GO:0005529||IEA  go_function sugar binding|GO:0005529||ISS  product curculin-like (mannose-binding) lectin family protein  note curculin-like (mannose-binding) lectin family protein; FUNCTIONS IN: sugar binding; LOCATED IN: apoplast, cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: stem, guard cell, cultured cell, callus; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609); BEST Arabidopsis thaliana protein match is: curculin-like (mannose-binding) lectin family protein (TAIR:AT1G78860.1); Has 1578 Blast hits to 1538 proteins in 84 species: Archae - 0; Bacteria - 40; Metazoa - 5; Fungi - 0; Plants - 1519; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G78850.1p  transcript_id AT1G78850.1  protein_id AT1G78850.1p  transcript_id AT1G78850.1  
At1g78860	chr1:029646168	0.0	C/29646168-29647499	AT1G78860.1  CDS  gene_syn F9K20.9, F9K20_9  function curculin-like (mannose-binding) lectin family protein, low similarity to Ser/Thr protein kinase (Zea mays) GI:2598067; contains Pfam profile PF01453: Lectin (probable mannose binding) but not the protein kinase domain of the Z. mays protein  go_component cell wall|GO:0005618|15593128|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_function sugar binding|GO:0005529||IEA  go_function sugar binding|GO:0005529||ISS  product curculin-like (mannose-binding) lectin family protein  note curculin-like (mannose-binding) lectin family protein; FUNCTIONS IN: sugar binding; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609); BEST Arabidopsis thaliana protein match is: curculin-like (mannose-binding) lectin family protein (TAIR:AT1G78850.1); Has 1566 Blast hits to 1529 proteins in 83 species: Archae - 0; Bacteria - 34; Metazoa - 3; Fungi - 0; Plants - 1508; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G78860.1p  transcript_id AT1G78860.1  protein_id AT1G78860.1p  transcript_id AT1G78860.1  
At1g78870	chr1:029650589	0.0	W/29650589-29650624,29650723-29650750,29650929-29651015,29651316-29651374,29651648-29651689,29651772-29651845,29651949-29652046,29652166-29652203	AT1G78870.2  CDS  gene_syn F9K20.8, F9K20_8, UBC13A, UBC35, UBIQUITIN CONJUGATING ENZYME 13A, UBIQUITIN-CONJUGATING ENZYME 35  gene UBC35  function UBC35/UBC13A encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UBC35/UBC13A can form diubiquitin and triubiquitin chains in combination with MMZ1,2,3,4/(UEV1A,B,C,D) in vitro. It can also functionally complement an mms2 ubc13 mutation in budding yeast by increasing the double mutant s viability in the presence of the DNA damaging agent MMS, when it is co-expressed with MMZ / UEV1 genes. A wild type phenotype is restored with MMZ3/UEV1C and MMZ4/UEV1D, but only partial complementation is achieved with MMZ1/UEV1A or MMZ2/UEV1B.  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component UBC13-MMS2 complex|GO:0031372|18178771|IPI  go_process postreplication repair|GO:0006301|18178771|IGI  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|18178771|IPI  product UBC35 (UBIQUITIN-CONJUGATING ENZYME 35); protein binding / ubiquitin-protein ligase  note UBIQUITIN-CONJUGATING ENZYME 35 (UBC35); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: response to cadmium ion, postreplication repair, ubiquitin-dependent protein catabolic process; LOCATED IN: UBC13-MMS2 complex; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme, putative (TAIR:AT1G16890.2); Has 7659 Blast hits to 7654 proteins in 307 species: Archae - 0; Bacteria - 2; Metazoa - 3724; Fungi - 1455; Plants - 1106; Viruses - 19; Other Eukaryotes - 1353 (source: NCBI BLink).  protein_id AT1G78870.2p  transcript_id AT1G78870.2  protein_id AT1G78870.2p  transcript_id AT1G78870.2  
At1g78870	chr1:029650589	0.0	W/29650589-29650624,29650723-29650750,29650929-29651015,29651316-29651374,29651648-29651689,29651772-29651858	AT1G78870.3  CDS  gene_syn F9K20.8, F9K20_8, UBC13A, UBC35, UBIQUITIN CONJUGATING ENZYME 13A, UBIQUITIN-CONJUGATING ENZYME 35  gene UBC35  function UBC35/UBC13A encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UBC35/UBC13A can form diubiquitin and triubiquitin chains in combination with MMZ1,2,3,4/(UEV1A,B,C,D) in vitro. It can also functionally complement an mms2 ubc13 mutation in budding yeast by increasing the double mutant s viability in the presence of the DNA damaging agent MMS, when it is co-expressed with MMZ / UEV1 genes. A wild type phenotype is restored with MMZ3/UEV1C and MMZ4/UEV1D, but only partial complementation is achieved with MMZ1/UEV1A or MMZ2/UEV1B.  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component UBC13-MMS2 complex|GO:0031372|18178771|IPI  go_process postreplication repair|GO:0006301|18178771|IGI  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|18178771|IPI  product UBC35 (UBIQUITIN-CONJUGATING ENZYME 35); protein binding / ubiquitin-protein ligase  note UBIQUITIN-CONJUGATING ENZYME 35 (UBC35); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: response to cadmium ion, postreplication repair, ubiquitin-dependent protein catabolic process; LOCATED IN: UBC13-MMS2 complex; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme, putative (TAIR:AT1G16890.2); Has 7304 Blast hits to 7301 proteins in 303 species: Archae - 0; Bacteria - 0; Metazoa - 3543; Fungi - 1396; Plants - 1078; Viruses - 19; Other Eukaryotes - 1268 (source: NCBI BLink).  protein_id AT1G78870.3p  transcript_id AT1G78870.3  protein_id AT1G78870.3p  transcript_id AT1G78870.3  
At1g78870	chr1:029650589	0.0	W/29650589-29650624,29650723-29650750,29650929-29651018,29651316-29651374,29651648-29651689,29651772-29651845,29651949-29652046,29652166-29652203	AT1G78870.1  CDS  gene_syn F9K20.8, F9K20_8, UBC13A, UBC35, UBIQUITIN CONJUGATING ENZYME 13A, UBIQUITIN-CONJUGATING ENZYME 35  gene UBC35  function UBC35/UBC13A encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UBC35/UBC13A can form diubiquitin and triubiquitin chains in combination with MMZ1,2,3,4/(UEV1A,B,C,D) in vitro. It can also functionally complement an mms2 ubc13 mutation in budding yeast by increasing the double mutant s viability in the presence of the DNA damaging agent MMS, when it is co-expressed with MMZ / UEV1 genes. A wild type phenotype is restored with MMZ3/UEV1C and MMZ4/UEV1D, but only partial complementation is achieved with MMZ1/UEV1A or MMZ2/UEV1B.  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component UBC13-MMS2 complex|GO:0031372|18178771|IPI  go_process postreplication repair|GO:0006301|18178771|IGI  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|18178771|IPI  product UBC35 (UBIQUITIN-CONJUGATING ENZYME 35); protein binding / ubiquitin-protein ligase  note UBIQUITIN-CONJUGATING ENZYME 35 (UBC35); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: response to cadmium ion, postreplication repair, ubiquitin-dependent protein catabolic process; LOCATED IN: UBC13-MMS2 complex; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme, putative (TAIR:AT1G16890.2); Has 7402 Blast hits to 7399 proteins in 306 species: Archae - 0; Bacteria - 0; Metazoa - 3595; Fungi - 1420; Plants - 1082; Viruses - 19; Other Eukaryotes - 1286 (source: NCBI BLink).  protein_id AT1G78870.1p  transcript_id AT1G78870.1  protein_id AT1G78870.1p  transcript_id AT1G78870.1  
At1g78880	chr1:029653974	0.0	C/29653974-29654819,29653672-29653827,29653359-29653570,29653068-29653260	AT1G78880.1  CDS  gene_syn F9K20.7, F9K20_7  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product balbiani ring 1-related / BR1-related  note balbiani ring 1-related / BR1-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: guard cell, cultured cell; BEST Arabidopsis thaliana protein match is: merozoite surface protein-related (TAIR:AT1G16860.1); Has 177 Blast hits to 146 proteins in 43 species: Archae - 0; Bacteria - 10; Metazoa - 37; Fungi - 35; Plants - 66; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G78880.1p  transcript_id AT1G78880.1  protein_id AT1G78880.1p  transcript_id AT1G78880.1  
At1g78882	chr1:029655685	0.0	C/29655685-29655762	AT1G78882.1  CDS  gene_syn CPuORF56, Conserved peptide upstream open reading frame 56  gene CPuORF56  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF56 represents a conserved upstream opening reading frame relative to major ORF AT1G78880.1  product CPuORF56 (Conserved peptide upstream open reading frame 56)  note Conserved peptide upstream open reading frame 56 (CPuORF56); Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G78882.1p  transcript_id AT1G78882.1  protein_id AT1G78882.1p  transcript_id AT1G78882.1  
At1g78890	chr1:029656623	0.0	W/29656623-29657019,29657467-29657537	AT1G78890.1  CDS  gene_syn F9K20.6, F9K20_6  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16840.4); Has 51 Blast hits to 51 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G78890.1p  transcript_id AT1G78890.1  protein_id AT1G78890.1p  transcript_id AT1G78890.1  
At1g78895	chr1:029659700	0.0	C/29659700-29659866,29659094-29659235,29658806-29658875,29658313-29658428	AT1G78895.1  CDS  go_component endoplasmic reticulum|GO:0005783||IEA  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16825.1); Has 81 Blast hits to 81 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G78895.1p  transcript_id AT1G78895.1  protein_id AT1G78895.1p  transcript_id AT1G78895.1  
At1g78900	chr1:029660463	0.0	W/29660463-29660540,29660793-29660919,29661030-29661085,29661166-29661222,29661329-29661440,29661528-29661565,29661695-29661796,29661984-29662040,29662133-29662204,29662289-29662390,29662476-29662538,29662617-29662749,29662839-29662945,29663049-29663243,29663431-29663517,29663601-29663705,29663907-29664004,29664103-29664181,29664278-29664366,29664461-29664575	AT1G78900.1  CDS  gene_syn VACUOLAR ATP SYNTHASE SUBUNIT A, VHA-A  gene VHA-A  function Encodes catalytic subunit A of the vacuolar ATP synthase. Mutants are devoid of vacuolar ATPase activity as subunit A is encoded only by this gene and show strong defects in male gametophyte development and in Golgi stack morphology.  go_component plant-type vacuole|GO:0000325|16618929|IDA  go_component cell wall|GO:0005618|16287169|IDA  go_component vacuole|GO:0005773|14760709|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances|GO:0016820||IEA  go_function hydrogen ion transporting ATP synthase activity, rotational mechanism|GO:0046933||IEA  go_function proton-transporting ATPase activity, rotational mechanism|GO:0046961||IEA  go_component vacuolar membrane|GO:0005774|16618929|IDA  go_process Golgi organization|GO:0007030|15610354|IMP  go_process pollen development|GO:0009555|15610354|IMP  go_process proton transport|GO:0015992||ISS  go_function ATP binding|GO:0005524||ISS  go_function hydrogen ion transporting ATP synthase activity, rotational mechanism|GO:0046933||ISS  product VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A); ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism  note VACUOLAR ATP SYNTHASE SUBUNIT A (VHA-A); FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, ATP binding, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: response to salt stress, proton transport, Golgi organization, pollen development; LOCATED IN: in 8 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal (InterPro:IPR000793), ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR004100), ATPase, F1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR018118), ATPase, V1 complex, subunit A (InterPro:IPR005725), ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding (InterPro:IPR000194); BEST Arabidopsis thaliana protein match is: ATP synthase beta chain 2, mitochondrial (TAIR:AT5G08690.1); Has 28941 Blast hits to 27874 proteins in 7314 species: Archae - 639; Bacteria - 13419; Metazoa - 1118; Fungi - 581; Plants - 6716; Viruses - 0; Other Eukaryotes - 6468 (source: NCBI BLink).  protein_id AT1G78900.1p  transcript_id AT1G78900.1  protein_id AT1G78900.1p  transcript_id AT1G78900.1  
At1g78900	chr1:029660463	0.0	W/29660463-29660540,29660793-29660919,29661030-29661085,29661166-29661222,29661329-29661440,29661528-29661565,29661695-29661796,29661984-29662040,29662133-29662204,29662289-29662390,29662476-29662538,29662617-29662749,29662839-29662945,29663049-29663243,29663431-29663517,29663601-29663705,29663907-29664004,29664103-29664181,29664278-29664366,29664461-29664575	AT1G78900.2  CDS  gene_syn VACUOLAR ATP SYNTHASE SUBUNIT A, VHA-A  gene VHA-A  function Encodes catalytic subunit A of the vacuolar ATP synthase. Mutants are devoid of vacuolar ATPase activity as subunit A is encoded only by this gene and show strong defects in male gametophyte development and in Golgi stack morphology.  go_component plant-type vacuole|GO:0000325|16618929|IDA  go_component cell wall|GO:0005618|16287169|IDA  go_component vacuole|GO:0005773|14760709|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances|GO:0016820||IEA  go_function hydrogen ion transporting ATP synthase activity, rotational mechanism|GO:0046933||IEA  go_function proton-transporting ATPase activity, rotational mechanism|GO:0046961||IEA  go_component vacuolar membrane|GO:0005774|16618929|IDA  go_process Golgi organization|GO:0007030|15610354|IMP  go_process pollen development|GO:0009555|15610354|IMP  go_process proton transport|GO:0015992||ISS  go_function ATP binding|GO:0005524||ISS  go_function hydrogen ion transporting ATP synthase activity, rotational mechanism|GO:0046933||ISS  product VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A); ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism  note VACUOLAR ATP SYNTHASE SUBUNIT A (VHA-A); FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, ATP binding, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: response to salt stress, proton transport, Golgi organization, pollen development; LOCATED IN: in 8 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal (InterPro:IPR000793), ATPase, F1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR018118), ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR004100), ATPase, V1 complex, subunit A (InterPro:IPR005725), ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding (InterPro:IPR000194); BEST Arabidopsis thaliana protein match is: ATP synthase beta chain 2, mitochondrial (TAIR:AT5G08690.1); Has 28941 Blast hits to 27874 proteins in 7314 species: Archae - 639; Bacteria - 13419; Metazoa - 1118; Fungi - 581; Plants - 6716; Viruses - 0; Other Eukaryotes - 6468 (source: NCBI BLink).  protein_id AT1G78900.2p  transcript_id AT1G78900.2  protein_id AT1G78900.2p  transcript_id AT1G78900.2  
At1g78910	chr1:029665269	0.0	W/29665269-29665589,29665764-29665835,29665937-29666095,29666215-29666262,29666365-29666445,29666529-29666645,29666751-29666852,29666929-29667087,29667180-29667557	AT1G78910.1  CDS  gene_syn F9K20.4, F9K20_4  go_process pseudouridine synthesis|GO:0001522||IEA  go_function pseudouridine synthase activity|GO:0009982|18599582|TAS  go_function pseudouridine synthase activity|GO:0009982||ISS  product pseudouridine synthase family protein  note pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase (InterPro:IPR006145), Pseudouridine synthase, conserved site (InterPro:IPR006224); BEST Arabidopsis thaliana protein match is: pseudouridine synthase family protein (TAIR:AT3G19440.1); Has 10350 Blast hits to 10341 proteins in 1426 species: Archae - 10; Bacteria - 6764; Metazoa - 215; Fungi - 81; Plants - 105; Viruses - 0; Other Eukaryotes - 3175 (source: NCBI BLink).  protein_id AT1G78910.1p  transcript_id AT1G78910.1  protein_id AT1G78910.1p  transcript_id AT1G78910.1  
At1g78915	chr1:029670971	0.0	C/29670971-29671081,29670861-29670889,29670738-29670775,29670489-29670576,29670114-29670219,29669929-29669999,29669626-29669695,29669462-29669524,29669100-29669171,29668890-29668991,29668596-29668670,29668376-29668474,29668026-29668142,29667886-29667942,29667729-29667788	AT1G78915.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); Has 611 Blast hits to 561 proteins in 141 species: Archae - 81; Bacteria - 302; Metazoa - 6; Fungi - 5; Plants - 52; Viruses - 0; Other Eukaryotes - 165 (source: NCBI BLink).  protein_id AT1G78915.1p  transcript_id AT1G78915.1  protein_id AT1G78915.1p  transcript_id AT1G78915.1  
At1g78920	chr1:029672340	0.0	W/29672340-29672438,29672609-29672812,29672923-29673074,29673163-29673310,29673387-29673519,29673841-29674013,29674163-29674283,29674776-29674963,29675144-29675581,29675662-29675826,29675903-29676058,29676144-29676255,29676356-29676575,29676662-29676761	AT1G78920.1  CDS  gene_syn ARABIDOPSIS VACUOLAR H+-PYROPHOSPHATASE 2, AVP2, AVPL1, F9K20.2, F9K20_2, VACUOLAR-PYROPHOSPHATASE LIKE PROTEIN 1, VACUOLAR-TYPE H+-TRANSLOCATING INORGANIC PYROPHOSPHATASE  gene AVP2  function vacuolar-type H+-translocating inorganic pyrophosphatase  go_component vacuole|GO:0005773|15215502|IDA  go_process proton transport|GO:0015992||IEA  go_component Golgi apparatus|GO:0005794|11163790|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_function hydrogen-translocating pyrophosphatase activity|GO:0009678|10806252|IDA  go_function hydrogen-translocating pyrophosphatase activity|GO:0009678|11163790|TAS  product AVP2 (ARABIDOPSIS VACUOLAR H+-PYROPHOSPHATASE 2); hydrogen-translocating pyrophosphatase  note ARABIDOPSIS VACUOLAR H+-PYROPHOSPHATASE 2 (AVP2); FUNCTIONS IN: hydrogen-translocating pyrophosphatase activity; INVOLVED IN: proton transport; LOCATED IN: Golgi apparatus, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inorganic H+ pyrophosphatase (InterPro:IPR004131); BEST Arabidopsis thaliana protein match is: vacuolar-type H+-translocating inorganic pyrophosphatase, putative (TAIR:AT1G16780.1); Has 5746 Blast hits to 5730 proteins in 477 species: Archae - 54; Bacteria - 693; Metazoa - 2; Fungi - 0; Plants - 189; Viruses - 0; Other Eukaryotes - 4808 (source: NCBI BLink).  protein_id AT1G78920.1p  transcript_id AT1G78920.1  protein_id AT1G78920.1p  transcript_id AT1G78920.1  
At1g78920	chr1:029672340	0.0	W/29672340-29672438,29672609-29672812,29672923-29673074,29673163-29673310,29673387-29673519,29673841-29674013,29674163-29674283,29674776-29674963,29675144-29675581,29675662-29675826,29675903-29676058,29676144-29676255,29676356-29676575,29676662-29676761	AT1G78920.2  CDS  gene_syn ARABIDOPSIS VACUOLAR H+-PYROPHOSPHATASE 2, AVP2, AVPL1, F9K20.2, F9K20_2, VACUOLAR-PYROPHOSPHATASE LIKE PROTEIN 1, VACUOLAR-TYPE H+-TRANSLOCATING INORGANIC PYROPHOSPHATASE  gene AVP2  function vacuolar-type H+-translocating inorganic pyrophosphatase  go_process proton transport|GO:0015992||IEA  go_component Golgi apparatus|GO:0005794|11163790|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_function hydrogen-translocating pyrophosphatase activity|GO:0009678|10806252|IDA  go_function hydrogen-translocating pyrophosphatase activity|GO:0009678|11163790|TAS  product AVP2 (ARABIDOPSIS VACUOLAR H+-PYROPHOSPHATASE 2); hydrogen-translocating pyrophosphatase  note ARABIDOPSIS VACUOLAR H+-PYROPHOSPHATASE 2 (AVP2); FUNCTIONS IN: hydrogen-translocating pyrophosphatase activity; INVOLVED IN: proton transport; LOCATED IN: Golgi apparatus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inorganic H+ pyrophosphatase (InterPro:IPR004131); BEST Arabidopsis thaliana protein match is: vacuolar-type H+-translocating inorganic pyrophosphatase, putative (TAIR:AT1G16780.1); Has 5746 Blast hits to 5730 proteins in 477 species: Archae - 54; Bacteria - 693; Metazoa - 2; Fungi - 0; Plants - 189; Viruses - 0; Other Eukaryotes - 4808 (source: NCBI BLink).  protein_id AT1G78920.2p  transcript_id AT1G78920.2  protein_id AT1G78920.2p  transcript_id AT1G78920.2  
At1g78922	chr1:029677718	0.0	C/29677718-29677815,29677516-29677616,29676949-29677418	AT1G78922.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21722.1); Has 9 Blast hits to 8 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G78922.1p  transcript_id AT1G78922.1  protein_id AT1G78922.1p  transcript_id AT1G78922.1  
At1g78930	chr1:029680106	0.0	C/29680106-29680648,29679877-29680014,29679538-29679783,29679327-29679440,29679017-29679199,29678707-29678924,29678285-29678618	AT1G78930.1  CDS  gene_syn YUP8H12R.46, YUP8H12R_46  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial transcription termination factor-related / mTERF-related  note mitochondrial transcription termination factor-related / mTERF-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: EMB2219 (embryo defective 2219) (TAIR:AT2G21710.1); Has 669 Blast hits to 420 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 90; Fungi - 0; Plants - 532; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G78930.1p  transcript_id AT1G78930.1  protein_id AT1G78930.1p  transcript_id AT1G78930.1  
At1g78940	chr1:029683619	0.0	C/29683619-29683678,29683428-29683549,29683130-29683341,29682992-29683034,29682590-29682902,29682403-29682504,29681921-29682328,29681056-29681838	AT1G78940.1  CDS  gene_syn YUP8H12R.45, YUP8H12R_45  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G16760.1); Has 81141 Blast hits to 79774 proteins in 3077 species: Archae - 63; Bacteria - 7873; Metazoa - 35160; Fungi - 6165; Plants - 18132; Viruses - 208; Other Eukaryotes - 13540 (source: NCBI BLink).  protein_id AT1G78940.1p  transcript_id AT1G78940.1  protein_id AT1G78940.1p  transcript_id AT1G78940.1  
At1g78950	chr1:029688470	0.0	C/29688470-29688673,29687956-29688141,29687634-29687723,29687359-29687556,29687192-29687276,29686870-29687036,29686591-29686782,29686409-29686522,29686204-29686323,29685991-29686113,29685809-29685907,29685668-29685724,29685383-29685573,29685120-29685297,29684962-29685042,29684795-29684878,29684558-29684668	AT1G78950.1  CDS  gene_syn YUP8H12R.44, YUP8H12R_44  go_function beta-amyrin synthase activity|GO:0042300|18977664|IDA  product beta-amyrin synthase, putative  note beta-amyrin synthase, putative; FUNCTIONS IN: beta-amyrin synthase activity; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Terpene synthase, conserved site (InterPro:IPR002365), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Squalene cyclase (InterPro:IPR018333), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: CAMS1 (Camelliol C synthase 1); beta-amyrin synthase (TAIR:AT1G78955.1); Has 1399 Blast hits to 1317 proteins in 365 species: Archae - 2; Bacteria - 568; Metazoa - 132; Fungi - 162; Plants - 337; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink).  protein_id AT1G78950.1p  transcript_id AT1G78950.1  protein_id AT1G78950.1p  transcript_id AT1G78950.1  
At1g78955	chr1:029694052	0.0	C/29694052-29694255,29692628-29692813,29692352-29692441,29692062-29692259,29691896-29691980,29691579-29691745,29691306-29691497,29691105-29691218,29690896-29691015,29690687-29690809,29690511-29690609,29690374-29690430,29690083-29690273,29689825-29690002,29689667-29689747,29689488-29689571,29689153-29689293	AT1G78955.1  CDS  gene_syn CAMS1, Camelliol C synthase 1  gene CAMS1  go_function beta-amyrin synthase activity|GO:0042300|10848960|IGI  go_function beta-amyrin synthase activity|GO:0042300|9746369|IGI  product CAMS1 (Camelliol C synthase 1); beta-amyrin synthase  note Camelliol C synthase 1 (CAMS1); FUNCTIONS IN: beta-amyrin synthase activity; CONTAINS InterPro DOMAIN/s: Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Squalene cyclase (InterPro:IPR018333), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: beta-amyrin synthase, putative (TAIR:AT1G78950.1); Has 1388 Blast hits to 1266 proteins in 357 species: Archae - 0; Bacteria - 592; Metazoa - 99; Fungi - 163; Plants - 339; Viruses - 0; Other Eukaryotes - 195 (source: NCBI BLink).  protein_id AT1G78955.1p  transcript_id AT1G78955.1  protein_id AT1G78955.1p  transcript_id AT1G78955.1  
At1g78960	chr1:029696722	0.0	W/29696722-29696925,29697360-29697545,29697675-29697764,29697861-29698058,29698146-29698230,29698350-29698516,29698599-29698790,29698878-29698991,29699068-29699187,29699269-29699391,29699480-29699578,29699661-29699717,29699832-29700022,29700105-29700282,29700378-29700458,29700555-29700638,29700902-29701024	AT1G78960.1  CDS  gene_syn ARABIDOPSIS THALIANA LUPEOL SYNTHASE 2, ATLUP2, YUP8H12R.43, YUP8H12R_43  gene ATLUP2  function Encodes a multifunctional 2-3-oxidosqualene (OS)-triterpene cyclase that can cyclize OS into lupeol, alpha- and beta-amyrin.  go_component cellular_component|GO:0005575||ND  go_process triterpenoid biosynthetic process|GO:0016104|11247608|IDA  go_process pentacyclic triterpenoid biosynthetic process|GO:0019745|9883589|IGI  go_process pentacyclic triterpenoid biosynthetic process|GO:0019745||ISS  go_function lupeol synthase activity|GO:0042299|9883589|IGI  go_function beta-amyrin synthase activity|GO:0042300|11247608|IDA  product ATLUP2; beta-amyrin synthase/ lupeol synthase  note ATLUP2; FUNCTIONS IN: beta-amyrin synthase activity, lupeol synthase activity; INVOLVED IN: pentacyclic triterpenoid biosynthetic process, triterpenoid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Terpene synthase, conserved site (InterPro:IPR002365), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Squalene cyclase (InterPro:IPR018333), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: lupeol synthase, putative / 2,3-oxidosqualene-triterpenoid cyclase, putative (TAIR:AT1G66960.1); Has 1392 Blast hits to 1308 proteins in 369 species: Archae - 0; Bacteria - 595; Metazoa - 93; Fungi - 160; Plants - 336; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink).  protein_id AT1G78960.1p  transcript_id AT1G78960.1  protein_id AT1G78960.1p  transcript_id AT1G78960.1  
At1g78970	chr1:029703414	0.0	W/29703414-29703617,29703720-29703905,29704210-29704299,29704385-29704573,29704674-29704758,29704851-29705017,29705103-29705294,29705405-29705518,29705599-29705718,29705806-29705928,29706036-29706134,29706229-29706285,29706577-29706767,29706954-29707131,29707228-29707308,29707418-29707501,29707602-29707715	AT1G78970.1  CDS  gene_syn ARABIDOPSIS THALIANA LUPEOL SYNTHASE 1, ATLUP1, LUP1, LUPEOL SYNTHASE 1  gene LUP1  function Lupeol synthase. Converts oxidosqualene to multiple triterpene alcohols and a triterpene diols. This conversion proceeds through the formation of a 17& 946;-dammarenyl cation.  go_component cellular_component|GO:0005575||ND  go_process pentacyclic triterpenoid biosynthetic process|GO:0019745|9883589|IGI  go_process pentacyclic triterpenoid biosynthetic process|GO:0019745||ISS  go_function lupeol synthase activity|GO:0042299|15989315|IDA  go_function lupeol synthase activity|GO:0042299|9883589|IDA  go_function lupeol synthase activity|GO:0042299|9883589|IGI  go_function beta-amyrin synthase activity|GO:0042300|9883589|IDA  product LUP1 (LUPEOL SYNTHASE 1); beta-amyrin synthase/ lupeol synthase  note LUPEOL SYNTHASE 1 (LUP1); FUNCTIONS IN: beta-amyrin synthase activity, lupeol synthase activity; INVOLVED IN: pentacyclic triterpenoid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Terpene synthase, conserved site (InterPro:IPR002365), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Squalene cyclase (InterPro:IPR018333), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: ATLUP2; beta-amyrin synthase/ lupeol synthase (TAIR:AT1G78960.1); Has 1388 Blast hits to 1288 proteins in 368 species: Archae - 0; Bacteria - 610; Metazoa - 72; Fungi - 162; Plants - 342; Viruses - 0; Other Eukaryotes - 202 (source: NCBI BLink).  protein_id AT1G78970.1p  transcript_id AT1G78970.1  protein_id AT1G78970.1p  transcript_id AT1G78970.1  
At1g78970	chr1:029703414	0.0	W/29703414-29703617,29703720-29703905,29704210-29704299,29704385-29704573,29704674-29704758,29704851-29705017,29705103-29705294,29705405-29705518,29705599-29705718,29705806-29705928,29706036-29706134,29706229-29706285,29706577-29706767,29706954-29707131,29707228-29707308,29707418-29707501,29707602-29707715	AT1G78970.2  CDS  gene_syn ARABIDOPSIS THALIANA LUPEOL SYNTHASE 1, ATLUP1, LUP1, LUPEOL SYNTHASE 1  gene LUP1  function Lupeol synthase. Converts oxidosqualene to multiple triterpene alcohols and a triterpene diols. This conversion proceeds through the formation of a 17& 946;-dammarenyl cation.  go_component cellular_component|GO:0005575||ND  go_process pentacyclic triterpenoid biosynthetic process|GO:0019745|9883589|IGI  go_process pentacyclic triterpenoid biosynthetic process|GO:0019745||ISS  go_function lupeol synthase activity|GO:0042299|15989315|IDA  go_function lupeol synthase activity|GO:0042299|9883589|IDA  go_function lupeol synthase activity|GO:0042299|9883589|IGI  go_function beta-amyrin synthase activity|GO:0042300|9883589|IDA  product LUP1 (LUPEOL SYNTHASE 1); beta-amyrin synthase/ lupeol synthase  note LUPEOL SYNTHASE 1 (LUP1); FUNCTIONS IN: beta-amyrin synthase activity, lupeol synthase activity; INVOLVED IN: pentacyclic triterpenoid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Terpene synthase, conserved site (InterPro:IPR002365), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Squalene cyclase (InterPro:IPR018333), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: ATLUP2; beta-amyrin synthase/ lupeol synthase (TAIR:AT1G78960.1); Has 1388 Blast hits to 1288 proteins in 368 species: Archae - 0; Bacteria - 610; Metazoa - 72; Fungi - 162; Plants - 342; Viruses - 0; Other Eukaryotes - 202 (source: NCBI BLink).  protein_id AT1G78970.2p  transcript_id AT1G78970.2  protein_id AT1G78970.2p  transcript_id AT1G78970.2  
At1g78980	chr1:029711182	0.0	C/29711182-29711266,29710955-29711087,29710786-29710857,29710628-29710693,29710480-29710551,29710319-29710390,29710150-29710221,29710003-29710068,29709857-29709922,29709441-29709751,29709108-29709373,29708765-29709036,29708552-29708672,29708338-29708474,29707923-29708211	AT1G78980.1  CDS  gene_syn SRF5, STRUBBELIG-RECEPTOR FAMILY 5, YUP8H12R.40, YUP8H12R_40  gene SRF5  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product SRF5 (STRUBBELIG-RECEPTOR FAMILY 5); ATP binding / kinase/ protein serine/threonine kinase  note STRUBBELIG-RECEPTOR FAMILY 5 (SRF5); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: SRF4 (STRUBBELIG-RECEPTOR FAMILY 4); ATP binding / kinase/ protein serine/threonine kinase (TAIR:AT3G13065.1); Has 116892 Blast hits to 89211 proteins in 2944 species: Archae - 68; Bacteria - 8494; Metazoa - 43947; Fungi - 6072; Plants - 42965; Viruses - 361; Other Eukaryotes - 14985 (source: NCBI BLink).  protein_id AT1G78980.1p  transcript_id AT1G78980.1  protein_id AT1G78980.1p  transcript_id AT1G78980.1  
At1g78990	chr1:029714550	0.0	C/29714550-29714969,29713531-29714478	AT1G78990.1  CDS  gene_syn YUP8H12R.39, YUP8H12R_39  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT1G32910.1); Has 1172 Blast hits to 1165 proteins in 98 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 15; Plants - 1155; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G78990.1p  transcript_id AT1G78990.1  protein_id AT1G78990.1p  transcript_id AT1G78990.1  
At1g78995	chr1:029715703	0.0	C/29715703-29716079,29715576-29715620,29715433-29715490	AT1G78995.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; Has 18 Blast hits to 18 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G78995.1p  transcript_id AT1G78995.1  protein_id AT1G78995.1p  transcript_id AT1G78995.1  
At1g79000	chr1:029723791	0.0	C/29723791-29723984,29723516-29723630,29723117-29723378,29722559-29723032,29722314-29722456,29720613-29722211,29720099-29720395,29719717-29719995,29719428-29719556,29719111-29719311,29718864-29719006,29718459-29718771,29718214-29718353,29717967-29718045,29717488-29717880,29717160-29717377,29716933-29717047	AT1G79000.1  CDS  gene_syn ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ATHPCAT2, HAC1, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, PCAT2, YUP8H12R.38, YUP8H12R_38  gene HAC1  function Homologous to CREB-binding protein, a co-activator of transcription with histone acetyl-transferase activity. No single prior lysine acetylation is sufficient to block HAC1 acetylation of the H3 or H4 peptides, suggesting that HAC1, HAC5, and HAC12 can acetylate any of several lysines present in the peptides. HAM2 acetylates histone H4 lysine 5. A plant line expressing an RNAi construct targeted against HAC1 has reduced rates of agrobacterium-mediated root transformation.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process regulation of transcription from RNA polymerase II promoter, global|GO:0006358||TAS  go_process protein amino acid acetylation|GO:0006473|17144897|IMP  go_process DNA mediated transformation|GO:0009294|17827277|IMP  go_process flower development|GO:0009908|17144897|IGI  go_process photoperiodism, flowering|GO:0048573|17144897|IMP  go_function transcription cofactor activity|GO:0003712||ISS  go_function histone acetyltransferase activity|GO:0004402|12466527|ISS  go_function histone acetyltransferase activity|GO:0004402||IDA  go_function H3/H4 histone acetyltransferase activity|GO:0004406|17877703|IDA  product HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1); H3/H4 histone acetyltransferase/ histone acetyltransferase/ transcription cofactor  note HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1 (HAC1); FUNCTIONS IN: histone acetyltransferase activity, transcription cofactor activity, H3/H4 histone acetyltransferase activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, TAZ-type (InterPro:IPR000197), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, ZZ-type (InterPro:IPR000433), Transcriptional coactivation (InterPro:IPR009255); BEST Arabidopsis thaliana protein match is: HAC12 (histone acetyltransferase of the CBP family 12); H3/H4 histone acetyltransferase/ histone acetyltransferase/ transcription cofactor (TAIR:AT1G16710.1); Has 7125 Blast hits to 5283 proteins in 337 species: Archae - 8; Bacteria - 563; Metazoa - 2227; Fungi - 664; Plants - 306; Viruses - 2; Other Eukaryotes - 3355 (source: NCBI BLink).  protein_id AT1G79000.1p  transcript_id AT1G79000.1  protein_id AT1G79000.1p  transcript_id AT1G79000.1  
At1g79010	chr1:029726880	0.0	C/29726880-29726933,29726407-29726485,29726225-29726278,29726012-29726103,29725821-29725934,29725507-29725574,29725313-29725424,29725138-29725233	AT1G79010.1  CDS  gene_syn YUP8H12R.37, YUP8H12R_37  go_function metal ion binding|GO:0046872|12606038|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|12606038|IDA  go_component mitochondrion|GO:0005739|12837548|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_function NADH dehydrogenase (ubiquinone) activity|GO:0008137||ISS  product NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY)  note NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY); FUNCTIONS IN: NADH dehydrogenase (ubiquinone) activity, metal ion binding; LOCATED IN: mitochondrion, respiratory chain complex I; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup (InterPro:IPR001450), NADH-quinone oxidoreductase, chain I (InterPro:IPR010226), 4Fe-4S ferredoxin, iron-sulpur binding domain (InterPro:IPR017896), 4Fe-4S ferredoxin, iron-sulphur binding, conserved site (InterPro:IPR017900), Alpha-helical ferredoxin (InterPro:IPR009051); BEST Arabidopsis thaliana protein match is: NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial, putative (TAIR:AT1G16700.1); Has 7771 Blast hits to 7380 proteins in 1556 species: Archae - 918; Bacteria - 3924; Metazoa - 127; Fungi - 70; Plants - 695; Viruses - 0; Other Eukaryotes - 2037 (source: NCBI BLink).  protein_id AT1G79010.1p  transcript_id AT1G79010.1  protein_id AT1G79010.1p  transcript_id AT1G79010.1  
At1g79020	chr1:029729904	0.0	C/29729904-29730059,29729712-29729841,29729513-29729615,29729089-29729212,29728918-29728983,29728649-29728687,29728467-29728547,29728326-29728373,29728091-29728141,29727936-29728004,29727611-29727862,29727282-29727524	AT1G79020.1  CDS  gene_syn YUP8H12R.36, YUP8H12R_36  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor-related  note transcription factor-related; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; BEST Arabidopsis thaliana protein match is: transcription factor-related (TAIR:AT1G16690.1); Has 295 Blast hits to 295 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 155; Fungi - 71; Plants - 35; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT1G79020.1p  transcript_id AT1G79020.1  protein_id AT1G79020.1p  transcript_id AT1G79020.1  
At1g79030	chr1:029733436	0.0	C/29733436-29733570,29732885-29733014,29732198-29732703,29732036-29732116,29731838-29731942,29731638-29731729,29731454-29731537,29731282-29731353,29731149-29731194	AT1G79030.1  CDS  gene_syn YUP8H12R.35, YUP8H12R_35  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putative  note DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putative; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putative (TAIR:AT1G16680.1); Has 12405 Blast hits to 12405 proteins in 1830 species: Archae - 81; Bacteria - 4258; Metazoa - 2583; Fungi - 969; Plants - 859; Viruses - 8; Other Eukaryotes - 3647 (source: NCBI BLink).  protein_id AT1G79030.1p  transcript_id AT1G79030.1  protein_id AT1G79030.1p  transcript_id AT1G79030.1  
At1g79040	chr1:029736085	0.0	W/29736085-29736244,29736336-29736394,29736481-29736536,29736634-29736781	AT1G79040.1  CDS  gene_syn PSBR, PSII-R, YUP8H12R.34, YUP8H12R_34, photosystem II subunit R  gene PSBR  function Encodes for the 10 kDa PsbR subunit of photosystem II (PSII). This subunit appears to be involved in the stable assembly of PSII, particularly that of the oxygen-evolving complex subunit PsbP. Mutants defective in this gene have reduced amounts of subunits PsbP and PsbQ in PSII. In turn, assembly of PsbR is dependent on the presence of PsbJ.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component photosystem II|GO:0009523||ISS  go_process response to light intensity|GO:0009642|16282331|IEP  go_process photosystem II oxygen evolving complex assembly|GO:0010270|16282331|IEP  go_process photosynthesis|GO:0015979||ISS  go_function molecular_function|GO:0003674||ND  product PSBR (photosystem II subunit R)  note photosystem II subunit R (PSBR); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosystem II oxygen evolving complex assembly, response to light intensity, photosynthesis; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, photosystem II; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II protein PsbR (InterPro:IPR006814); Has 98 Blast hits to 97 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G79040.1p  transcript_id AT1G79040.1  protein_id AT1G79040.1p  transcript_id AT1G79040.1  
At1g79050	chr1:029739892	0.0	C/29739892-29740140,29739284-29739375,29738957-29739032,29738804-29738866,29738584-29738713,29738402-29738487,29738188-29738313,29737969-29738073,29737817-29737873,29737666-29737728,29737509-29737585,29737329-29737401,29737084-29737206	AT1G79050.1  CDS  gene_syn YUP8H12R.33, YUP8H12R_33  go_component chloroplast|GO:0009507||IEA  go_process DNA metabolic process|GO:0006259||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function DNA binding|GO:0003677||IEA  go_function ATP binding|GO:0005524||IEA  go_function DNA-dependent ATPase activity|GO:0008094||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process DNA repair|GO:0006281||ISS  go_process DNA recombination|GO:0006310||ISS  go_process SOS response|GO:0009432||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA-dependent ATPase activity|GO:0008094||ISS  product DNA repair protein recA  note DNA repair protein recA; FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: DNA repair, SOS response, DNA recombination, DNA metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), RecA (InterPro:IPR013765), RecA bacterial DNA recombination (InterPro:IPR001553); BEST Arabidopsis thaliana protein match is: recA family protein (TAIR:AT2G19490.1); Has 14364 Blast hits to 14273 proteins in 3412 species: Archae - 325; Bacteria - 9309; Metazoa - 186; Fungi - 148; Plants - 163; Viruses - 77; Other Eukaryotes - 4156 (source: NCBI BLink).  protein_id AT1G79050.1p  transcript_id AT1G79050.1  protein_id AT1G79050.1p  transcript_id AT1G79050.1  
At1g79050	chr1:029739892	0.0	C/29739892-29740140,29739284-29739375,29738957-29739032,29738804-29738866,29738584-29738713,29738402-29738487,29738188-29738313,29737969-29738073,29737817-29737873,29737708-29737728,29737364-29737390	AT1G79050.2  CDS  gene_syn YUP8H12R.33, YUP8H12R_33  go_component chloroplast|GO:0009507||IEA  go_process DNA metabolic process|GO:0006259||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function DNA binding|GO:0003677||IEA  go_function ATP binding|GO:0005524||IEA  go_function DNA-dependent ATPase activity|GO:0008094||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process DNA repair|GO:0006281||ISS  go_process DNA recombination|GO:0006310||ISS  go_process SOS response|GO:0009432||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA-dependent ATPase activity|GO:0008094||ISS  product DNA repair protein recA  note DNA repair protein recA; FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: DNA repair, SOS response, DNA recombination, DNA metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), RecA (InterPro:IPR013765), RecA bacterial DNA recombination (InterPro:IPR001553); BEST Arabidopsis thaliana protein match is: recA family protein (TAIR:AT2G19490.1); Has 13804 Blast hits to 13737 proteins in 3401 species: Archae - 325; Bacteria - 9263; Metazoa - 186; Fungi - 146; Plants - 163; Viruses - 56; Other Eukaryotes - 3665 (source: NCBI BLink).  protein_id AT1G79050.2p  transcript_id AT1G79050.2  protein_id AT1G79050.2p  transcript_id AT1G79050.2  
At1g79060	chr1:029741873	0.0	W/29741873-29743063	AT1G79060.1  CDS  gene_syn YUP8H12R.32, YUP8H12R_32  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56020.1); Has 3270 Blast hits to 887 proteins in 158 species: Archae - 0; Bacteria - 617; Metazoa - 634; Fungi - 189; Plants - 72; Viruses - 8; Other Eukaryotes - 1750 (source: NCBI BLink).  protein_id AT1G79060.1p  transcript_id AT1G79060.1  protein_id AT1G79060.1p  transcript_id AT1G79060.1  
At1g79070	chr1:029745582	0.0	C/29745582-29745807,29745167-29745331,29745018-29745043	AT1G79070.1  CDS  gene_syn YUP8H12R.31, YUP8H12R_31  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SNARE-associated protein-related  note SNARE-associated protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; Has 13 Blast hits to 13 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G79070.1p  transcript_id AT1G79070.1  protein_id AT1G79070.1p  transcript_id AT1G79070.1  
At1g79075	chr1:029745939	0.0	W/29745939-29746842	AT1G79075.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G79075.1  
At1g79075	chr1:029746013	0.0	W/29746013-29746816	AT1G79075.2  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G79075.2  
At1g79080	chr1:029747102	0.0	C/29747102-29748832	AT1G79080.1  CDS  gene_syn YUP8H12R.30, YUP8H12R_30  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G09900.1); Has 20667 Blast hits to 5554 proteins in 171 species: Archae - 3; Bacteria - 18; Metazoa - 483; Fungi - 372; Plants - 18942; Viruses - 0; Other Eukaryotes - 849 (source: NCBI BLink).  protein_id AT1G79080.1p  transcript_id AT1G79080.1  protein_id AT1G79080.1p  transcript_id AT1G79080.1  
At1g79090	chr1:029752864	0.0	C/29752864-29752945,29752327-29752469,29752124-29752180,29751922-29751985,29749551-29751586	AT1G79090.1  CDS  gene_syn YUP8H12R.29, YUP8H12R_29  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22270.1); Has 1095 Blast hits to 996 proteins in 141 species: Archae - 0; Bacteria - 25; Metazoa - 583; Fungi - 222; Plants - 137; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).  protein_id AT1G79090.1p  transcript_id AT1G79090.1  protein_id AT1G79090.1p  transcript_id AT1G79090.1  
At1g79090	chr1:029752864	0.0	C/29752864-29752945,29752327-29752469,29752124-29752180,29751922-29751985,29749551-29751586	AT1G79090.2  CDS  gene_syn YUP8H12R.29, YUP8H12R_29  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22270.1); Has 1095 Blast hits to 996 proteins in 141 species: Archae - 0; Bacteria - 25; Metazoa - 583; Fungi - 222; Plants - 137; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).  protein_id AT1G79090.2p  transcript_id AT1G79090.2  protein_id AT1G79090.2p  transcript_id AT1G79090.2  
At1g79100	chr1:029753648	0.0	W/29753648-29753672,29753894-29753940,29754025-29754108,29754332-29754388	AT1G79100.1  CDS  gene_syn YUP8H12R.28, YUP8H12R_28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product arginine/serine-rich protein-related  note arginine/serine-rich protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: SR45; RNA binding / protein binding (TAIR:AT1G16610.2); Has 26 Blast hits to 26 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G79100.1p  transcript_id AT1G79100.1  protein_id AT1G79100.1p  transcript_id AT1G79100.1  
At1g79110	chr1:029759345	0.0	W/29759345-29759400,29759490-29759922,29759999-29760586	AT1G79110.1  CDS  gene_syn YUP8H12R.27, YUP8H12R_27  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT3G12920.1); Has 877 Blast hits to 874 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 503; Fungi - 4; Plants - 253; Viruses - 24; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT1G79110.1p  transcript_id AT1G79110.1  protein_id AT1G79110.1p  transcript_id AT1G79110.1  
At1g79110	chr1:029759345	0.0	W/29759345-29759400,29759490-29759922,29760008-29760586	AT1G79110.2  CDS  gene_syn YUP8H12R.27, YUP8H12R_27  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT3G12920.1); Has 899 Blast hits to 898 proteins in 121 species: Archae - 0; Bacteria - 2; Metazoa - 516; Fungi - 4; Plants - 263; Viruses - 24; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT1G79110.2p  transcript_id AT1G79110.2  protein_id AT1G79110.2p  transcript_id AT1G79110.2  
At1g79120	chr1:029767314	0.0	C/29767314-29768555	AT1G79120.1  CDS  gene_syn YUP8H12R.26, YUP8H12R_26  go_component intracellular|GO:0005622||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  product ubiquitin thiolesterase  note ubiquitin thiolesterase; FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (InterPro:IPR001578); BEST Arabidopsis thaliana protein match is: ubiquitin thiolesterase (TAIR:AT5G21970.1); Has 214 Blast hits to 214 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 214; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G79120.1p  transcript_id AT1G79120.1  protein_id AT1G79120.1p  transcript_id AT1G79120.1  
At1g79130	chr1:029771319	0.0	W/29771319-29771723	AT1G79130.1  CDS  gene_syn YUP8H12R.25, YUP8H12R_25  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT1G16510.1); Has 604 Blast hits to 600 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 603; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G79130.1p  transcript_id AT1G79130.1  protein_id AT1G79130.1p  transcript_id AT1G79130.1  
At1g79150	chr1:029777711	0.0	C/29777711-29777874,29777409-29777569,29777116-29777312,29776635-29776843,29776413-29776515,29776165-29776328,29775849-29775987,29775437-29775610,29775143-29775279,29773685-29774017,29773462-29773601,29773272-29773369,29772716-29773189	AT1G79150.1  CDS  gene_syn YUP8H12R.24, YUP8H12R_24  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCAAT-binding factor (InterPro:IPR005612), Armadillo-type fold (InterPro:IPR016024), Nucleolar complex-associated (InterPro:IPR011501); Has 2887 Blast hits to 2283 proteins in 254 species: Archae - 13; Bacteria - 165; Metazoa - 1107; Fungi - 323; Plants - 101; Viruses - 26; Other Eukaryotes - 1152 (source: NCBI BLink).  protein_id AT1G79150.1p  transcript_id AT1G79150.1  protein_id AT1G79150.1p  transcript_id AT1G79150.1  
At1g79160	chr1:029780444	0.0	C/29780444-29780668,29779862-29780356	AT1G79160.1  CDS  gene_syn YUP8H12R.23, YUP8H12R_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16500.1); Has 42 Blast hits to 40 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G79160.1p  transcript_id AT1G79160.1  protein_id AT1G79160.1p  transcript_id AT1G79160.1  
At1g79170	chr1:029782273	0.0	W/29782273-29782286,29782382-29782622	AT1G79170.1  CDS  gene_syn YUP8H12R.22, YUP8H12R_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 14 Blast hits to 14 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G79170.1p  transcript_id AT1G79170.1  protein_id AT1G79170.1p  transcript_id AT1G79170.1  
At1g79180	chr1:029786509	0.0	W/29786509-29786647,29786747-29786876,29786974-29787589	AT1G79180.1  CDS  gene_syn ATMYB63, MYB DOMAIN PROTEIN 63, MYB63, YUP8H12R.21, YUP8H12R_21  gene MYB63  function Member of the R2R3 factor gene family.  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|19122102|IDA  product MYB63 (MYB DOMAIN PROTEIN 63); DNA binding / transcription activator/ transcription factor  note MYB DOMAIN PROTEIN 63 (MYB63); FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: response to jasmonic acid stimulus, regulation of transcription, DNA-dependent, regulation of secondary cell wall thickening, response to salicylic acid stimulus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB58 (MYB DOMAIN PROTEIN 58); DNA binding / transcription activator/ transcription factor (TAIR:AT1G16490.1); Has 6793 Blast hits to 6069 proteins in 384 species: Archae - 0; Bacteria - 4; Metazoa - 791; Fungi - 343; Plants - 3900; Viruses - 6; Other Eukaryotes - 1749 (source: NCBI BLink).  protein_id AT1G79180.1p  transcript_id AT1G79180.1  protein_id AT1G79180.1p  transcript_id AT1G79180.1  
At1g79190	chr1:029788639	0.0	W/29788639-29788847,29789019-29789199,29789317-29789625,29789722-29789811,29789893-29790345,29790439-29790546,29790633-29790763,29790864-29790993,29791132-29791465,29791576-29792210,29792309-29792467,29792596-29792670,29792769-29793077,29793158-29793373,29793448-29794116	AT1G79190.1  CDS  gene_syn YUP8H12R.20, YUP8H12R_20  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 138 Blast hits to 128 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 61; Fungi - 55; Plants - 18; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G79190.1p  transcript_id AT1G79190.1  protein_id AT1G79190.1p  transcript_id AT1G79190.1  
At1g79200	chr1:029794404	0.0	W/29794404-29794476,29794649-29794759,29795175-29795233,29795475-29795711	AT1G79200.1  CDS  gene_syn YUP8H12R.41, YUP8H12R_41  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; Has 3292 Blast hits to 2186 proteins in 154 species: Archae - 0; Bacteria - 21; Metazoa - 1599; Fungi - 418; Plants - 200; Viruses - 0; Other Eukaryotes - 1054 (source: NCBI BLink).  protein_id AT1G79200.1p  transcript_id AT1G79200.1  protein_id AT1G79200.1p  transcript_id AT1G79200.1  
At1g79210	chr1:029798200	0.0	C/29798200-29798240,29798029-29798105,29797877-29797941,29797702-29797748,29797429-29797504,29797194-29797261,29796895-29796964,29796710-29796795,29796571-29796633,29796419-29796484,29796286-29796334	AT1G79210.1  CDS  gene_syn YUP8H12R.19, YUP8H12R_19  go_component proteasome core complex|GO:0005839||IEA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_function endopeptidase activity|GO:0004175||IEA  go_function threonine-type endopeptidase activity|GO:0004298||IEA  go_component proteasome core complex|GO:0005839||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_function endopeptidase activity|GO:0004175||ISS  product 20S proteasome alpha subunit B, putative  note 20S proteasome alpha subunit B, putative; FUNCTIONS IN: endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: defense response to bacterium, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome alpha-subunit, conserved site (InterPro:IPR000426), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: PAB1 (PROTEASOME SUBUNIT PAB1); endopeptidase/ peptidase/ threonine-type endopeptidase (TAIR:AT1G16470.2); Has 4863 Blast hits to 4862 proteins in 365 species: Archae - 503; Bacteria - 26; Metazoa - 1915; Fungi - 1030; Plants - 554; Viruses - 0; Other Eukaryotes - 835 (source: NCBI BLink).  protein_id AT1G79210.1p  transcript_id AT1G79210.1  protein_id AT1G79210.1p  transcript_id AT1G79210.1  
At1g79210	chr1:029798200	0.0	C/29798200-29798240,29798029-29798105,29797877-29797941,29797702-29797748,29797429-29797504,29797194-29797261,29796895-29796964,29796710-29796795,29796571-29796633,29796419-29796484,29796286-29796334	AT1G79210.2  CDS  gene_syn YUP8H12R.19, YUP8H12R_19  go_component proteasome core complex|GO:0005839||IEA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_function endopeptidase activity|GO:0004175||IEA  go_function threonine-type endopeptidase activity|GO:0004298||IEA  go_component proteasome core complex|GO:0005839||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_function endopeptidase activity|GO:0004175||ISS  product 20S proteasome alpha subunit B, putative  note 20S proteasome alpha subunit B, putative; FUNCTIONS IN: endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: defense response to bacterium, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome alpha-subunit, conserved site (InterPro:IPR000426), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: PAB1 (PROTEASOME SUBUNIT PAB1); endopeptidase/ peptidase/ threonine-type endopeptidase (TAIR:AT1G16470.2); Has 4863 Blast hits to 4862 proteins in 365 species: Archae - 503; Bacteria - 26; Metazoa - 1915; Fungi - 1030; Plants - 554; Viruses - 0; Other Eukaryotes - 835 (source: NCBI BLink).  protein_id AT1G79210.2p  transcript_id AT1G79210.2  protein_id AT1G79210.2p  transcript_id AT1G79210.2  
At1g79210	chr1:029798200	0.0	C/29798200-29798240,29798029-29798105,29797877-29797941,29797702-29797748,29797429-29797504,29797194-29797261,29796895-29796964,29796710-29796795,29796571-29796633,29796419-29796484,29796286-29796334	AT1G79210.3  CDS  gene_syn YUP8H12R.19, YUP8H12R_19  go_component proteasome core complex|GO:0005839||IEA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_function endopeptidase activity|GO:0004175||IEA  go_function threonine-type endopeptidase activity|GO:0004298||IEA  go_component proteasome core complex|GO:0005839||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_function endopeptidase activity|GO:0004175||ISS  product 20S proteasome alpha subunit B, putative  note 20S proteasome alpha subunit B, putative; FUNCTIONS IN: endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: defense response to bacterium, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome alpha-subunit, conserved site (InterPro:IPR000426), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: PAB1 (PROTEASOME SUBUNIT PAB1); endopeptidase/ peptidase/ threonine-type endopeptidase (TAIR:AT1G16470.2); Has 4863 Blast hits to 4862 proteins in 365 species: Archae - 503; Bacteria - 26; Metazoa - 1915; Fungi - 1030; Plants - 554; Viruses - 0; Other Eukaryotes - 835 (source: NCBI BLink).  protein_id AT1G79210.3p  transcript_id AT1G79210.3  protein_id AT1G79210.3p  transcript_id AT1G79210.3  
At1g79220	chr1:029799227	0.0	W/29799227-29800426	AT1G79220.1  CDS  gene_syn YUP8H12R.18, YUP8H12R_18  go_process biological_process|GO:0008150||ND  product mitochondrial transcription termination factor family protein / mTERF family protein  note mitochondrial transcription termination factor family protein / mTERF family protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: mitochondrial transcription termination factor-related / mTERF-related (TAIR:AT5G64950.1); Has 524 Blast hits to 440 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 0; Plants - 407; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G79220.1p  transcript_id AT1G79220.1  protein_id AT1G79220.1p  transcript_id AT1G79220.1  
At1g79230	chr1:029800824	0.0	W/29800824-29800925,29801289-29801474,29801554-29801613,29801757-29801819,29802116-29802240,29802348-29802510,29802630-29802689,29802938-29802996,29803112-29803193,29803286-29803349,29803433-29803500,29803572-29803679	AT1G79230.1  CDS  gene_syn ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 1, ATMST1, ATRDH1, MERCAPTOPYRUVATE SULFURTRANSFERASE, MERCAPTOPYRUVATE SULFURTRANSFERASE 1, MST1, ST1, STR1, SULFURTRANSFERASE 1, YUP8H12R.17, YUP8H12R_17  gene MST1  function encodes a sulfurtransferase/rhodaneses, which belongs to a group of enzymes widely distributed in all three phyla that catalyze the transfer of sulfur from a donor to a thiophilic acceptor substrate. The protein and transcript levels are NOT affected by senescence or exogenous cyanide, suggesting that sulfurtransferases are involved in cyanide detoxification.  go_component chloroplast|GO:0009507|18431481|IDA  go_process sulfate transport|GO:0008272||IEA  go_component mitochondrion|GO:0005739|10734224|IEP  go_component mitochondrion|GO:0005739|10951223|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process aging|GO:0007568||ISS  go_function thiosulfate sulfurtransferase activity|GO:0004792|10734224|ISS  go_function thiosulfate sulfurtransferase activity|GO:0004792||ISS  go_function sulfurtransferase activity|GO:0016783|12437129|IDA  go_function 3-mercaptopyruvate sulfurtransferase activity|GO:0016784|10951223|IDA  product MST1 (MERCAPTOPYRUVATE SULFURTRANSFERASE 1); 3-mercaptopyruvate sulfurtransferase/ sulfurtransferase/ thiosulfate sulfurtransferase  note MERCAPTOPYRUVATE SULFURTRANSFERASE 1 (MST1); FUNCTIONS IN: 3-mercaptopyruvate sulfurtransferase activity, thiosulfate sulfurtransferase activity, sulfurtransferase activity; INVOLVED IN: sulfate transport, aging; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Thiosulphate sulfurtransferase, conserved site (InterPro:IPR001307); BEST Arabidopsis thaliana protein match is: ATRDH2 (ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2); 3-mercaptopyruvate sulfurtransferase/ thiosulfate sulfurtransferase (TAIR:AT1G16460.2); Has 4367 Blast hits to 4349 proteins in 853 species: Archae - 86; Bacteria - 1957; Metazoa - 258; Fungi - 102; Plants - 60; Viruses - 0; Other Eukaryotes - 1904 (source: NCBI BLink).  protein_id AT1G79230.1p  transcript_id AT1G79230.1  protein_id AT1G79230.1p  transcript_id AT1G79230.1  
At1g79230	chr1:029801358	0.0	W/29801358-29801474,29801554-29801613,29801757-29801819,29802116-29802240,29802348-29802510,29802630-29802689,29802938-29802996,29803112-29803193,29803286-29803349,29803433-29803500,29803572-29803679	AT1G79230.3  CDS  gene_syn ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 1, ATMST1, ATRDH1, MERCAPTOPYRUVATE SULFURTRANSFERASE, MERCAPTOPYRUVATE SULFURTRANSFERASE 1, MST1, ST1, STR1, SULFURTRANSFERASE 1, YUP8H12R.17, YUP8H12R_17  gene MST1  function encodes a sulfurtransferase/rhodaneses, which belongs to a group of enzymes widely distributed in all three phyla that catalyze the transfer of sulfur from a donor to a thiophilic acceptor substrate. The protein and transcript levels are NOT affected by senescence or exogenous cyanide, suggesting that sulfurtransferases are involved in cyanide detoxification.  go_component chloroplast|GO:0009507|18431481|IDA  go_process sulfate transport|GO:0008272||IEA  go_component mitochondrion|GO:0005739|10734224|IEP  go_component mitochondrion|GO:0005739|10951223|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process aging|GO:0007568||ISS  go_function thiosulfate sulfurtransferase activity|GO:0004792|10734224|ISS  go_function thiosulfate sulfurtransferase activity|GO:0004792||ISS  go_function sulfurtransferase activity|GO:0016783|12437129|IDA  go_function 3-mercaptopyruvate sulfurtransferase activity|GO:0016784|10951223|IDA  product MST1 (MERCAPTOPYRUVATE SULFURTRANSFERASE 1); 3-mercaptopyruvate sulfurtransferase/ sulfurtransferase/ thiosulfate sulfurtransferase  note MERCAPTOPYRUVATE SULFURTRANSFERASE 1 (MST1); FUNCTIONS IN: 3-mercaptopyruvate sulfurtransferase activity, thiosulfate sulfurtransferase activity, sulfurtransferase activity; INVOLVED IN: sulfate transport, aging; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Thiosulphate sulfurtransferase, conserved site (InterPro:IPR001307); BEST Arabidopsis thaliana protein match is: ATRDH2 (ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2); 3-mercaptopyruvate sulfurtransferase/ thiosulfate sulfurtransferase (TAIR:AT1G16460.3); Has 4363 Blast hits to 4349 proteins in 853 species: Archae - 86; Bacteria - 1955; Metazoa - 258; Fungi - 102; Plants - 60; Viruses - 0; Other Eukaryotes - 1902 (source: NCBI BLink).  protein_id AT1G79230.3p  transcript_id AT1G79230.3  protein_id AT1G79230.3p  transcript_id AT1G79230.3  
At1g79230	chr1:029801561	0.0	W/29801561-29801613,29801757-29801819,29802116-29802244,29802348-29802510,29802630-29802689,29802938-29802996,29803112-29803193,29803286-29803349,29803433-29803500,29803572-29803679	AT1G79230.2  CDS  gene_syn ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 1, ATMST1, ATRDH1, MERCAPTOPYRUVATE SULFURTRANSFERASE, MERCAPTOPYRUVATE SULFURTRANSFERASE 1, MST1, ST1, STR1, SULFURTRANSFERASE 1, YUP8H12R.17, YUP8H12R_17  gene MST1  function encodes a sulfurtransferase/rhodaneses, which belongs to a group of enzymes widely distributed in all three phyla that catalyze the transfer of sulfur from a donor to a thiophilic acceptor substrate. The protein and transcript levels are NOT affected by senescence or exogenous cyanide, suggesting that sulfurtransferases are involved in cyanide detoxification.  go_component chloroplast|GO:0009507|18431481|IDA  go_process sulfate transport|GO:0008272||IEA  go_component mitochondrion|GO:0005739|10734224|IEP  go_component mitochondrion|GO:0005739|10951223|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process aging|GO:0007568||ISS  go_function thiosulfate sulfurtransferase activity|GO:0004792|10734224|ISS  go_function thiosulfate sulfurtransferase activity|GO:0004792||ISS  go_function sulfurtransferase activity|GO:0016783|12437129|IDA  go_function 3-mercaptopyruvate sulfurtransferase activity|GO:0016784|10951223|IDA  product MST1 (MERCAPTOPYRUVATE SULFURTRANSFERASE 1); 3-mercaptopyruvate sulfurtransferase/ sulfurtransferase/ thiosulfate sulfurtransferase  note MERCAPTOPYRUVATE SULFURTRANSFERASE 1 (MST1); FUNCTIONS IN: 3-mercaptopyruvate sulfurtransferase activity, thiosulfate sulfurtransferase activity, sulfurtransferase activity; INVOLVED IN: sulfate transport, aging; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Thiosulphate sulfurtransferase, conserved site (InterPro:IPR001307); BEST Arabidopsis thaliana protein match is: ATRDH2 (ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2); 3-mercaptopyruvate sulfurtransferase/ thiosulfate sulfurtransferase (TAIR:AT1G16460.3); Has 3699 Blast hits to 3692 proteins in 828 species: Archae - 71; Bacteria - 1865; Metazoa - 238; Fungi - 100; Plants - 56; Viruses - 0; Other Eukaryotes - 1369 (source: NCBI BLink).  protein_id AT1G79230.2p  transcript_id AT1G79230.2  protein_id AT1G79230.2p  transcript_id AT1G79230.2  
At1g79240	chr1:029804123	0.0	W/29804123-29804195	AT1G79240.1  tRNA  gene_syn 51051.TRNA-ARG-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: CCG)  transcript_id AT1G79240.1  
At1g79245	chr1:029804735	0.0	C/29804735-29809514	AT1G79245.1  pseudogenic_transcript  pseudo  function pseudogene of unknown protein  note expressed protein, Several heterogeneous transcript sequences map to this position  
At1g79250	chr1:029812148	0.0	C/29812148-29812186,29811352-29812058,29810336-29811257	AT1G79250.1  CDS  gene_syn AGC KINASE 1.7, AGC1.7, YUP8H12R.15, YUP8H12R_15  gene AGC1.7  go_process unidimensional cell growth|GO:0009826|19144004|IGI  go_process pollen tube growth|GO:0009860|19144004|IGI  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product AGC1.7 (AGC KINASE 1.7); kinase  note AGC KINASE 1.7 (AGC1.7); FUNCTIONS IN: kinase activity; INVOLVED IN: pollen tube growth, unidimensional cell growth; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: kinase (TAIR:AT1G16440.1); Has 86717 Blast hits to 65351 proteins in 2342 species: Archae - 16; Bacteria - 7267; Metazoa - 39504; Fungi - 8788; Plants - 11570; Viruses - 377; Other Eukaryotes - 19195 (source: NCBI BLink).  protein_id AT1G79250.1p  transcript_id AT1G79250.1  protein_id AT1G79250.1p  transcript_id AT1G79250.1  
At1g79260	chr1:029813282	0.0	W/29813282-29813452,29813542-29813682,29813771-29813839,29813947-29814066	AT1G79260.1  CDS  gene_syn YUP8H12R.14, YUP8H12R_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1794 (InterPro:IPR014878); Has 445 Blast hits to 445 proteins in 114 species: Archae - 0; Bacteria - 250; Metazoa - 95; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).  protein_id AT1G79260.1p  transcript_id AT1G79260.1  protein_id AT1G79260.1p  transcript_id AT1G79260.1  
At1g79270	chr1:029816157	0.0	W/29816157-29816190,29816607-29816677,29816790-29816907,29816998-29817068,29817162-29817518,29817606-29818088,29818171-29818383,29818477-29818620,29818716-29818811	AT1G79270.1  CDS  gene_syn ECT8, evolutionarily conserved C-terminal region 8  gene ECT8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ECT8 (evolutionarily conserved C-terminal region 8)  note evolutionarily conserved C-terminal region 8 (ECT8); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: YT521-B-like protein (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: ECT6 (evolutionarily conserved C-terminal region 6) (TAIR:AT3G17330.1); Has 700 Blast hits to 699 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 344; Fungi - 84; Plants - 193; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT1G79270.1p  transcript_id AT1G79270.1  protein_id AT1G79270.1p  transcript_id AT1G79270.1  
At1g79280	chr1:029832501	0.0	C/29832501-29832809,29832273-29832419,29832089-29832187,29831811-29831939,29831643-29831735,29831487-29831552,29831240-29831329,29831076-29831153,29830642-29830745,29830077-29830197,29829899-29829991,29829665-29829713,29829445-29829548,29829303-29829371,29828992-29829135,29828782-29828886,29828597-29828710,29828409-29828487,29827915-29827964,29827733-29827806,29827166-29827268,29826953-29827087,29826790-29826888,29826669-29826710,29826530-29826583,29826266-29826445,29825835-29825882,29825673-29825720,29825245-29825328,29825097-29825171,29824795-29824979,29824597-29824699,29824133-29824249,29823942-29824034,29823579-29823737,29823430-29823483,29823162-29823275,29822972-29823049,29822715-29822864,29822560-29822631,29821816-29821971,29821624-29821707,29821461-29821542,29821305-29821381,29821070-29821219,29820867-29820980,29820599-29820770,29819176-29820512	AT1G79280.1  CDS  gene_syn NUA, NUCLEAR PORE ANCHOR, YUP8H12R.12, YUP8H12R_12  gene NUA  function Encodes a 237-kDA protein with similarity to vertebrate Tpr, a long coiled-coil proteins of nuclear pore inner basket filaments. It is localized to the inner surface of the nuclear envelope and is a component of the nuclear pore-associated steps of sumoylation and mRNA export in plants. Mutations affect flowering time regulation and other developmental processes. Probably acts in the same pathway as ESD4 in affecting flowering time, vegetative and inflorescence development.  go_component nucleolus|GO:0005730|15496452|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component nuclear envelope|GO:0005635|17513499|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process negative regulation of flower development|GO:0009910|17513499|IMP  go_process poly(A)+ mRNA export from nucleus|GO:0016973|17513499|IMP  go_process negative regulation of protein sumoylation|GO:0033234|17513499|IMP  go_process stamen development|GO:0048443|17513499|IMP  go_function molecular_function|GO:0003674||ND  product NUA (NUCLEAR PORE ANCHOR)  note NUCLEAR PORE ANCHOR (NUA); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: stamen development, poly(A)+ mRNA export from nucleus, negative regulation of protein sumoylation, negative regulation of flower development; LOCATED IN: cytosol, nuclear envelope, nucleolus, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide, MLP1/MLP2-like (InterPro:IPR012929); BEST Arabidopsis thaliana protein match is: CIP1 (COP1-INTERACTIVE PROTEIN 1); protein binding (TAIR:AT5G41790.1); Has 299727 Blast hits to 113523 proteins in 2727 species: Archae - 3076; Bacteria - 43002; Metazoa - 139390; Fungi - 25132; Plants - 10925; Viruses - 1892; Other Eukaryotes - 76310 (source: NCBI BLink).  protein_id AT1G79280.1p  transcript_id AT1G79280.1  protein_id AT1G79280.1p  transcript_id AT1G79280.1  
At1g79290	chr1:029833117	0.0	W/29833117-29833188	AT1G79290.1  tRNA  gene_syn 51051.TRNA-LYS-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Lys (anticodon: TTT)  transcript_id AT1G79290.1  
At1g79300	chr1:029833718	0.0	W/29833718-29833789	AT1G79300.1  tRNA  gene_syn 51051.TRNA-LYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Lys (anticodon: TTT)  transcript_id AT1G79300.1  
At1g79310	chr1:029833986	0.0	W/29833986-29834331,29834547-29835412	AT1G79310.1  CDS  gene_syn AtMC7, YUP8H12R.7, YUP8H12R_7, metacaspase 7  gene AtMC7  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_component cellular_component|GO:0005575||ND  product AtMC7 (metacaspase 7); cysteine-type endopeptidase  note metacaspase 7 (AtMC7); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: AtMC4 (metacaspase 4); cysteine-type peptidase (TAIR:AT1G79340.1); Has 825 Blast hits to 812 proteins in 206 species: Archae - 6; Bacteria - 234; Metazoa - 0; Fungi - 212; Plants - 180; Viruses - 0; Other Eukaryotes - 193 (source: NCBI BLink).  protein_id AT1G79310.1p  transcript_id AT1G79310.1  protein_id AT1G79310.1p  transcript_id AT1G79310.1  
At1g79320	chr1:029836686	0.0	W/29836686-29837031,29837148-29837908	AT1G79320.1  CDS  gene_syn AtMC6, YUP8H12R.6, YUP8H12R_6, metacaspase 6  gene AtMC6  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_component cellular_component|GO:0005575||ND  product AtMC6 (metacaspase 6); cysteine-type endopeptidase  note metacaspase 6 (AtMC6); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: ATMC5 (ARABIDOPSIS THALIANA METACASPASE 5); cysteine-type endopeptidase (TAIR:AT1G79330.1); Has 831 Blast hits to 830 proteins in 214 species: Archae - 3; Bacteria - 253; Metazoa - 0; Fungi - 194; Plants - 178; Viruses - 0; Other Eukaryotes - 203 (source: NCBI BLink).  protein_id AT1G79320.1p  transcript_id AT1G79320.1  protein_id AT1G79320.1p  transcript_id AT1G79320.1  
At1g79330	chr1:029838722	0.0	W/29838722-29839067,29839251-29840137	AT1G79330.1  CDS  gene_syn AMC6, ARABIDOPSIS THALIANA METACASPASE 5, ATMC5, ATMCP2B, YUP8H12R.5, YUP8H12R_5  gene ATMC5  function Metacaspase AtMCPb2/AMC6. Caspase family protein. Arginine/lysine-specific cysteine protease activity. Induces apoptosis in yeast. Contains Pfam domain, PF00656: ICE-like protease (caspase) p20 domain.  go_component chloroplast|GO:0009507|18431481|IDA  go_process induction of apoptosis|GO:0006917|15691845|IDA  go_function cysteine-type endopeptidase activity|GO:0004197|15691845|IDA  product ATMC5 (ARABIDOPSIS THALIANA METACASPASE 5); cysteine-type endopeptidase  note ARABIDOPSIS THALIANA METACASPASE 5 (ATMC5); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: induction of apoptosis; LOCATED IN: chloroplast; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: AtMC4 (metacaspase 4); cysteine-type peptidase (TAIR:AT1G79340.1); Has 875 Blast hits to 849 proteins in 208 species: Archae - 2; Bacteria - 258; Metazoa - 2; Fungi - 204; Plants - 187; Viruses - 0; Other Eukaryotes - 222 (source: NCBI BLink).  protein_id AT1G79330.1p  transcript_id AT1G79330.1  protein_id AT1G79330.1p  transcript_id AT1G79330.1  
At1g79340	chr1:029842849	0.0	W/29842849-29843194,29843458-29844368	AT1G79340.1  CDS  gene_syn AtMC4, YUP8H12R.4, YUP8H12R_4, metacaspase 4  gene AtMC4  go_component plasma membrane|GO:0005886|17644812|IDA  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type peptidase activity|GO:0008234|15326173|IDA  product AtMC4 (metacaspase 4); cysteine-type peptidase  note metacaspase 4 (AtMC4); FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: ATMC5 (ARABIDOPSIS THALIANA METACASPASE 5); cysteine-type endopeptidase (TAIR:AT1G79330.1); Has 835 Blast hits to 815 proteins in 210 species: Archae - 5; Bacteria - 241; Metazoa - 2; Fungi - 193; Plants - 189; Viruses - 0; Other Eukaryotes - 205 (source: NCBI BLink).  protein_id AT1G79340.1p  transcript_id AT1G79340.1  protein_id AT1G79340.1p  transcript_id AT1G79340.1  
At1g79350	chr1:029852607	0.0	C/29852607-29853215,29852356-29852529,29852140-29852270,29851870-29851946,29851099-29851280,29850831-29850908,29850487-29850619,29850156-29850216,29849998-29850079,29849551-29849679,29849325-29849468,29849114-29849213,29848863-29849024,29848452-29848522,29848199-29848371,29848014-29848107,29847699-29847796,29847486-29847621,29847213-29847319,29846997-29847119,29846825-29846876,29846594-29846714,29846389-29846500,29846166-29846289,29846019-29846096,29845821-29845939,29845653-29845706,29845465-29845567,29845167-29845295,29844972-29845083,29844829-29844860	AT1G79350.1  CDS  gene_syn EMB1135, YUP8H12R.3, YUP8H12R_3, embryo defective 1135  gene EMB1135  go_component chloroplast|GO:0009507||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function DNA binding|GO:0003677||ISS  product EMB1135 (embryo defective 1135); DNA binding / protein binding / zinc ion binding  note embryo defective 1135 (EMB1135); FUNCTIONS IN: protein binding, DNA binding, zinc ion binding; INVOLVED IN: embryonic development ending in seed dormancy, regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, LSD1-type (InterPro:IPR005735), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: ATXR6; DNA binding / protein binding (TAIR:AT5G24330.1); Has 3516 Blast hits to 3129 proteins in 248 species: Archae - 2; Bacteria - 434; Metazoa - 2253; Fungi - 273; Plants - 285; Viruses - 34; Other Eukaryotes - 235 (source: NCBI BLink).  protein_id AT1G79350.1p  transcript_id AT1G79350.1  protein_id AT1G79350.1p  transcript_id AT1G79350.1  
At1g79360	chr1:029854140	0.0	C/29854140-29855723	AT1G79360.1  CDS  gene_syn ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 2, ATOCT2, YUP8H12R.2, YUP8H12R_2  gene ATOCT2  go_component integral to membrane|GO:0016021||IEA  go_process ion transport|GO:0006811||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product ATOCT2 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 2); carbohydrate transmembrane transporter/ sugar:hydrogen symporter  note ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 2 (ATOCT2); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: ion transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Organic cation transport protein (InterPro:IPR004749), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ATOCT3 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 3); carbohydrate transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT1G16390.1); Has 15494 Blast hits to 15323 proteins in 1102 species: Archae - 266; Bacteria - 6288; Metazoa - 4094; Fungi - 3194; Plants - 981; Viruses - 0; Other Eukaryotes - 671 (source: NCBI BLink).  protein_id AT1G79360.1p  transcript_id AT1G79360.1  protein_id AT1G79360.1p  transcript_id AT1G79360.1  
At1g79370	chr1:029857934	0.0	W/29857934-29858298,29858542-29859172,29859264-29859537,29859793-29860163	AT1G79370.1  CDS  gene_syn CYP79C1, CYTOCHROME P450, FAMILY 79, SUBFAMILY C, POLYPEPTIDE 1, YUP8H12R.1, YUP8H12R_1  gene CYP79C1  function member of CYP79C  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process biological_process|GO:0008150||ND  go_function oxygen binding|GO:0019825||ISS  product CYP79C1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP79C1; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973); BEST Arabidopsis thaliana protein match is: CYP79C2 (CYTOCHROME P450 79C2); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G58260.1); Has 19735 Blast hits to 19636 proteins in 1135 species: Archae - 18; Bacteria - 1512; Metazoa - 9263; Fungi - 3142; Plants - 5154; Viruses - 0; Other Eukaryotes - 646 (source: NCBI BLink).  protein_id AT1G79370.1p  transcript_id AT1G79370.1  protein_id AT1G79370.1p  transcript_id AT1G79370.1  
At1g79380	chr1:029860812	0.0	W/29860812-29861006,29861254-29861338,29861426-29861566,29861644-29861757,29861830-29861927,29862000-29862079,29862171-29862276,29862356-29862483,29862597-29862714,29862793-29862849,29862940-29863023	AT1G79380.1  CDS  gene_syn T8K14.20, T8K14_20  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product copine-related  note copine-related; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Copine (InterPro:IPR010734), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: RGLG2 (RING domain Ligase2); ubiquitin-protein ligase (TAIR:AT5G14420.4); Has 1485 Blast hits to 1479 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 1005; Fungi - 8; Plants - 185; Viruses - 72; Other Eukaryotes - 215 (source: NCBI BLink).  protein_id AT1G79380.1p  transcript_id AT1G79380.1  protein_id AT1G79380.1p  transcript_id AT1G79380.1  
At1g79390	chr1:029864076	0.0	C/29864076-29864276,29863465-29863644	AT1G79390.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 18 Blast hits to 18 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G79390.1p  transcript_id AT1G79390.1  protein_id AT1G79390.1p  transcript_id AT1G79390.1  
At1g79400	chr1:029864992	0.0	W/29864992-29865150,29865253-29866236,29866460-29867391,29867564-29867840	AT1G79400.1  CDS  gene_syn ATCHX2, CATION/H+ EXCHANGER 2, CHX2, T8K14.18, T8K14_18  gene ATCHX2  function member of Putative Na+/H+ antiporter family  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|IC  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product ATCHX2 (CATION/H+ EXCHANGER 2); monovalent cation:proton antiporter/ sodium:hydrogen antiporter  note CATION/H+ EXCHANGER 2 (ATCHX2); FUNCTIONS IN: monovalent cation:proton antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: ATCHX1; monovalent cation:proton antiporter/ sodium:hydrogen antiporter (TAIR:AT1G16380.1); Has 1867 Blast hits to 1844 proteins in 543 species: Archae - 141; Bacteria - 1155; Metazoa - 32; Fungi - 92; Plants - 228; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).  protein_id AT1G79400.1p  transcript_id AT1G79400.1  protein_id AT1G79400.1p  transcript_id AT1G79400.1  
At1g79410	chr1:029868037	0.0	C/29868037-29869584	AT1G79410.1  CDS  gene_syn Arabidopsis thaliana ORGANIC CATION/CARNITINE TRANSPORTER5, AtOCT5, T8K14.17, T8K14_17  gene AtOCT5  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product AtOCT5 (Arabidopsis thaliana ORGANIC CATION/CARNITINE TRANSPORTER5); carbohydrate transmembrane transporter/ sugar:hydrogen symporter  note Arabidopsis thaliana ORGANIC CATION/CARNITINE TRANSPORTER5 (AtOCT5); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: OCT6 (ORGANIC CATION/CARNITINE TRANSPORTER 6); carbohydrate transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT1G16370.1); Has 7747 Blast hits to 7716 proteins in 810 species: Archae - 115; Bacteria - 2685; Metazoa - 3179; Fungi - 902; Plants - 506; Viruses - 0; Other Eukaryotes - 360 (source: NCBI BLink).  protein_id AT1G79410.1p  transcript_id AT1G79410.1  protein_id AT1G79410.1p  transcript_id AT1G79410.1  
At1g79420	chr1:029871537	0.0	W/29871537-29871890,29872306-29872665,29873627-29874166	AT1G79420.1  CDS  gene_syn T8K14.16, T8K14_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF620 (InterPro:IPR006873); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19540.1); Has 111 Blast hits to 107 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 111; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G79420.1p  transcript_id AT1G79420.1  protein_id AT1G79420.1p  transcript_id AT1G79420.1  
At1g79430	chr1:029878794	0.0	C/29878794-29878850,29878591-29878657,29878395-29878461,29878266-29878308,29877521-29878168	AT1G79430.1  CDS  gene_syn ALTERED PHLOEM DEVELOPMENT, APL, T8K14.15, T8K14_15, WDY, WOODY  gene APL  function Encodes gene product that is required for several aspects of phloem development in the root: (1) the specific divisions organizing the phloem pole, (2) sieve element differentiation and (3) the expression of a companion-specific gene. Mutant has a defect in the organization of phloem poles in the root. apl seedlings have a short, determinate root with only occasional lateral branches.  go_component nucleus|GO:0005634|14614507|IDA  go_process phloem histogenesis|GO:0010088|14614507|IMP  go_process xylem histogenesis|GO:0010089|14614507|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription regulator activity|GO:0030528|14614507|ISS  product APL (ALTERED PHLOEM DEVELOPMENT); transcription factor/ transcription regulator  note ALTERED PHLOEM DEVELOPMENT (APL); FUNCTIONS IN: transcription factor activity, transcription regulator activity; INVOLVED IN: phloem histogenesis, xylem histogenesis, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT3G12730.1); Has 301 Blast hits to 297 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 301; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G79430.1p  transcript_id AT1G79430.1  protein_id AT1G79430.1p  transcript_id AT1G79430.1  
At1g79430	chr1:029878961	0.0	C/29878961-29879135,29878794-29878870,29878591-29878657,29878395-29878461,29878266-29878308,29877521-29878168	AT1G79430.2  CDS  gene_syn ALTERED PHLOEM DEVELOPMENT, APL, T8K14.15, T8K14_15, WDY, WOODY  gene APL  function Encodes gene product that is required for several aspects of phloem development in the root: (1) the specific divisions organizing the phloem pole, (2) sieve element differentiation and (3) the expression of a companion-specific gene. Mutant has a defect in the organization of phloem poles in the root. apl seedlings have a short, determinate root with only occasional lateral branches.  go_component nucleus|GO:0005634|14614507|IDA  go_process phloem histogenesis|GO:0010088|14614507|IMP  go_process xylem histogenesis|GO:0010089|14614507|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription regulator activity|GO:0030528|14614507|ISS  product APL (ALTERED PHLOEM DEVELOPMENT); transcription factor/ transcription regulator  note ALTERED PHLOEM DEVELOPMENT (APL); FUNCTIONS IN: transcription factor activity, transcription regulator activity; INVOLVED IN: phloem histogenesis, xylem histogenesis, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT3G12730.1); Has 902 Blast hits to 895 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 895; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G79430.2p  transcript_id AT1G79430.2  protein_id AT1G79430.2p  transcript_id AT1G79430.2  
At1g79440	chr1:029887177	0.0	C/29887177-29887275,29886799-29886912,29886608-29886707,29886406-29886454,29886211-29886298,29885990-29886100,29885572-29885634,29885341-29885451,29884894-29884959,29884705-29884782,29884532-29884609,29884203-29884269,29884043-29884128,29883795-29883827,29883663-29883695,29883400-29883500,29883190-29883275,29882982-29883088,29882832-29882909,29882525-29882563	AT1G79440.1  CDS  gene_syn ALDH5F1, SSADH, SSADH1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1  gene ALDH5F1  function Encodes a mitochondrial succinic semialdehyde dehydrogenase (SSADH). Nomenclature according to Kirch, et al (2004).  go_component chloroplast|GO:0009507|18431481|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial matrix|GO:0005759|10517851|IDA  go_process glutamate decarboxylation to succinate|GO:0006540|10517851|IDA  go_process glutamate decarboxylation to succinate|GO:0006540|15642352|IMP  go_process oxygen and reactive oxygen species metabolic process|GO:0006800|15642352|IMP  go_process response to stress|GO:0006950|12740438|IMP  go_process response to heat|GO:0009408|12740438|IMP  go_process response to light stimulus|GO:0009416|12740438|IMP  go_process gamma-aminobutyric acid catabolic process|GO:0009450|10517851|IDA  go_function 3-chloroallyl aldehyde dehydrogenase activity|GO:0004028||ISS  go_function succinate-semialdehyde dehydrogenase activity|GO:0004777|10517851|IDA  go_function succinate-semialdehyde dehydrogenase activity|GO:0004777|10517851|ISS  go_function NAD or NADH binding|GO:0051287|10955999|IDA  product ALDH5F1; 3-chloroallyl aldehyde dehydrogenase/ NAD or NADH binding / succinate-semialdehyde dehydrogenase  note ALDH5F1; FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, NAD or NADH binding, succinate-semialdehyde dehydrogenase activity; INVOLVED IN: in 6 processes; LOCATED IN: mitochondrion, chloroplast, mitochondrial matrix; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160), Succinic semialdehyde dehydrogenase (InterPro:IPR010102); BEST Arabidopsis thaliana protein match is: ALDH10A9; 3-chloroallyl aldehyde dehydrogenase/ oxidoreductase (TAIR:AT3G48170.1); Has 43946 Blast hits to 43691 proteins in 1805 species: Archae - 243; Bacteria - 20118; Metazoa - 2272; Fungi - 1317; Plants - 580; Viruses - 0; Other Eukaryotes - 19416 (source: NCBI BLink).  protein_id AT1G79440.1p  transcript_id AT1G79440.1  protein_id AT1G79440.1p  transcript_id AT1G79440.1  
At1g79450	chr1:029887831	0.0	W/29887831-29887918,29888371-29888429,29888510-29888584,29888686-29888799,29888900-29888970,29889068-29889365,29889449-29889738,29889847-29889904	AT1G79450.1  CDS  gene_syn ALA-Interacting Subunit 5, ALIS5, T8K14.13, T8K14_13  gene ALIS5  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|ISS  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  product ALIS5 (ALA-Interacting Subunit 5)  note ALA-Interacting Subunit 5 (ALIS5); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid lumen, plasma membrane, membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF284, transmembrane eukaryotic (InterPro:IPR005045); BEST Arabidopsis thaliana protein match is: LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (TAIR:AT1G16360.1); Has 642 Blast hits to 642 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 217; Fungi - 139; Plants - 105; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink).  protein_id AT1G79450.1p  transcript_id AT1G79450.1  protein_id AT1G79450.1p  transcript_id AT1G79450.1  
At1g79450	chr1:029888665	0.0	W/29888665-29888799,29888900-29888970,29889068-29889365,29889449-29889738,29889847-29889904	AT1G79450.2  CDS  gene_syn ALA-Interacting Subunit 5, ALIS5, T8K14.13, T8K14_13  gene ALIS5  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|ISS  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  product ALIS5 (ALA-Interacting Subunit 5)  note ALA-Interacting Subunit 5 (ALIS5); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid lumen, plasma membrane, membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF284, transmembrane eukaryotic (InterPro:IPR005045); BEST Arabidopsis thaliana protein match is: LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (TAIR:AT1G16360.1); Has 634 Blast hits to 634 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 212; Fungi - 138; Plants - 105; Viruses - 0; Other Eukaryotes - 179 (source: NCBI BLink).  protein_id AT1G79450.2p  transcript_id AT1G79450.2  protein_id AT1G79450.2p  transcript_id AT1G79450.2  
At1g79460	chr1:029890568	0.0	W/29890568-29890613,29890929-29890981,29891070-29891358,29891439-29891619,29891724-29891941,29892019-29892139,29892221-29892318,29892409-29892626,29892688-29892803,29892925-29893023,29893189-29893404,29893491-29893632,29893727-29893972,29894122-29894436	AT1G79460.1  CDS  gene_syn ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, ATKS, ATKS1, ENT-KAURENE SYNTHASE, GA REQUIRING 2, GA2, KS, T8K14.12, T8K14_12  gene GA2  function Encodes for a protein with ent-kaurene synthase B activity which catalyzes the second step in the cyclization of GGPP to ent-kaurene in the gibberellins biosynthetic pathway.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|9536043|TAS  go_component plastid|GO:0009536|9536043|TAS  go_component plastid|GO:0009536||NAS  go_component chloroplast stroma|GO:0009570|11722763|IDA  go_process gibberellin biosynthetic process|GO:0009686|9536043|IDA  go_process gibberellin biosynthetic process|GO:0009686|9536043|IGI  go_process gibberellic acid mediated signaling|GO:0009740|9536043|TAS  go_function ent-kaurene synthase activity|GO:0009899|9536043|IDA  product GA2 (GA REQUIRING 2); ent-kaurene synthase  note GA REQUIRING 2 (GA2); FUNCTIONS IN: ent-kaurene synthase activity; INVOLVED IN: gibberellin biosynthetic process, gibberellic acid mediated signaling; LOCATED IN: chloroplast stroma, chloroplast, plastid; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: TPS04 (TERPENE SYNTHASE 04); (E,E)-geranyllinalool synthase (TAIR:AT1G61120.1); Has 1264 Blast hits to 1257 proteins in 190 species: Archae - 0; Bacteria - 28; Metazoa - 0; Fungi - 44; Plants - 1189; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G79460.1p  transcript_id AT1G79460.1  protein_id AT1G79460.1p  transcript_id AT1G79460.1  
At1g79470	chr1:029896259	0.0	C/29896259-29896661,29895562-29896160,29895272-29895451,29894934-29895191,29894772-29894843	AT1G79470.1  CDS  gene_syn T8K14.11, T8K14_11  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function IMP dehydrogenase activity|GO:0003938||IEA  go_process GMP biosynthetic process|GO:0006177||ISS  go_function IMP dehydrogenase activity|GO:0003938||ISS  product inosine-5 -monophosphate dehydrogenase  note inosine-5 -monophosphate dehydrogenase; FUNCTIONS IN: IMP dehydrogenase activity, catalytic activity; INVOLVED IN: GMP biosynthetic process, metabolic process; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: IMP dehydrogenase (InterPro:IPR005990), IMP dehydrogenase related (InterPro:IPR018529), Aldolase-type TIM barrel (InterPro:IPR013785), IMP dehydrogenase/GMP reductase (InterPro:IPR001093), IMP dehydrogenase / GMP reductase, conserved site (InterPro:IPR015875); BEST Arabidopsis thaliana protein match is: inosine-5 -monophosphate dehydrogenase, putative (TAIR:AT1G16350.1); Has 9381 Blast hits to 8736 proteins in 1480 species: Archae - 102; Bacteria - 3617; Metazoa - 420; Fungi - 120; Plants - 45; Viruses - 2; Other Eukaryotes - 5075 (source: NCBI BLink).  protein_id AT1G79470.1p  transcript_id AT1G79470.1  protein_id AT1G79470.1p  transcript_id AT1G79470.1  
At1g79480	chr1:029899189	0.0	C/29899189-29899267,29898017-29899096,29897905-29897936	AT1G79480.2  CDS  gene_syn T8K14.10, T8K14_10  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family protein 17 (TAIR:AT5G67460.1); Has 4247 Blast hits to 3762 proteins in 375 species: Archae - 10; Bacteria - 432; Metazoa - 1406; Fungi - 619; Plants - 1140; Viruses - 87; Other Eukaryotes - 553 (source: NCBI BLink).  protein_id AT1G79480.2p  transcript_id AT1G79480.2  protein_id AT1G79480.2p  transcript_id AT1G79480.2  
At1g79480	chr1:029899189	0.0	C/29899189-29899267,29898017-29899099,29897905-29897936	AT1G79480.1  CDS  gene_syn T8K14.10, T8K14_10  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family protein 17 (TAIR:AT5G67460.1); Has 136128 Blast hits to 57102 proteins in 1817 species: Archae - 165; Bacteria - 17617; Metazoa - 56967; Fungi - 20796; Plants - 12784; Viruses - 3661; Other Eukaryotes - 24138 (source: NCBI BLink).  protein_id AT1G79480.1p  transcript_id AT1G79480.1  protein_id AT1G79480.1p  transcript_id AT1G79480.1  
At1g79490	chr1:029900617	0.0	W/29900617-29903127	AT1G79490.1  CDS  gene_syn EMB2217, T8K14.9, T8K14_9, embryo defective 2217  gene EMB2217  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product EMB2217 (embryo defective 2217)  note embryo defective 2217 (EMB2217); INVOLVED IN: embryonic development ending in seed dormancy; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G18900.2); Has 18855 Blast hits to 5781 proteins in 180 species: Archae - 1; Bacteria - 24; Metazoa - 317; Fungi - 445; Plants - 17396; Viruses - 0; Other Eukaryotes - 672 (source: NCBI BLink).  protein_id AT1G79490.1p  transcript_id AT1G79490.1  protein_id AT1G79490.1p  transcript_id AT1G79490.1  
At1g79500	chr1:029903604	0.0	W/29903604-29903639,29903731-29903828,29904010-29904106,29904364-29904429,29904512-29904571,29904689-29904763,29904847-29904931,29905125-29905183,29905292-29905336,29905427-29905525,29905634-29905681,29905772-29905819,29905933-29905989	AT1G79500.1  CDS  gene_syn AtkdsA1, T8K14.8, T8K14_8  function Encodes a protein with 3-deoxy-8-phosphooctulonate synthase (KDOP synthase) activity which is involved in the biosynthesis of KDO, a component of cell wall rhamnogalacturonan II.  go_component cytoplasm|GO:0005737||IEA  go_component endomembrane system|GO:0012505||IEA  go_component cytoplasm|GO:0005737||ISS  go_process metabolic process|GO:0008152||ISS  go_process rhamnogalacturonan II biosynthetic process|GO:0010306|12754267|TAS  go_function 3-deoxy-8-phosphooctulonate synthase activity|GO:0008676|12754267|IDA  go_function 3-deoxy-8-phosphooctulonate synthase activity|GO:0008676||ISS  product 2-dehydro-3-deoxyphosphooctonate aldolase / phospho-2-dehydro-3-deoxyoctonate aldolase / 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA)  note AtkdsA1; FUNCTIONS IN: 3-deoxy-8-phosphooctulonate synthase activity; INVOLVED IN: rhamnogalacturonan II biosynthetic process, metabolic process; LOCATED IN: endomembrane system, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase I/KDSA (InterPro:IPR006218), Aldolase-type TIM barrel (InterPro:IPR013785), 3-deoxy-8-phosphooctulonate synthase (InterPro:IPR006269); BEST Arabidopsis thaliana protein match is: ATKDSA2; 3-deoxy-8-phosphooctulonate synthase (TAIR:AT1G16340.3); Has 5591 Blast hits to 5591 proteins in 1105 species: Archae - 46; Bacteria - 2711; Metazoa - 4; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 2791 (source: NCBI BLink).  protein_id AT1G79500.1p  transcript_id AT1G79500.1  protein_id AT1G79500.1p  transcript_id AT1G79500.1  
At1g79500	chr1:029903604	0.0	W/29903604-29903639,29903731-29903828,29904010-29904106,29904364-29904429,29904512-29904571,29904689-29904763,29904847-29904931,29905125-29905183,29905292-29905336,29905427-29905525,29905634-29905681,29905772-29905819,29905933-29905989	AT1G79500.2  CDS  gene_syn AtkdsA1, T8K14.8, T8K14_8  function Encodes a protein with 3-deoxy-8-phosphooctulonate synthase (KDOP synthase) activity which is involved in the biosynthesis of KDO, a component of cell wall rhamnogalacturonan II.  go_component cytoplasm|GO:0005737||IEA  go_component endomembrane system|GO:0012505||IEA  go_component cytoplasm|GO:0005737||ISS  go_process metabolic process|GO:0008152||ISS  go_process rhamnogalacturonan II biosynthetic process|GO:0010306|12754267|TAS  go_function 3-deoxy-8-phosphooctulonate synthase activity|GO:0008676|12754267|IDA  go_function 3-deoxy-8-phosphooctulonate synthase activity|GO:0008676||ISS  product 2-dehydro-3-deoxyphosphooctonate aldolase / phospho-2-dehydro-3-deoxyoctonate aldolase / 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA)  note AtkdsA1; FUNCTIONS IN: 3-deoxy-8-phosphooctulonate synthase activity; INVOLVED IN: rhamnogalacturonan II biosynthetic process, metabolic process; LOCATED IN: endomembrane system, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase I/KDSA (InterPro:IPR006218), Aldolase-type TIM barrel (InterPro:IPR013785), 3-deoxy-8-phosphooctulonate synthase (InterPro:IPR006269); BEST Arabidopsis thaliana protein match is: ATKDSA2; 3-deoxy-8-phosphooctulonate synthase (TAIR:AT1G16340.3); Has 5591 Blast hits to 5591 proteins in 1105 species: Archae - 46; Bacteria - 2711; Metazoa - 4; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 2791 (source: NCBI BLink).  protein_id AT1G79500.2p  transcript_id AT1G79500.2  protein_id AT1G79500.2p  transcript_id AT1G79500.2  
At1g79500	chr1:029903604	0.0	W/29903604-29903639,29903731-29903828,29904010-29904106,29904364-29904429,29904512-29904571,29904689-29904763,29904847-29904931,29905125-29905183,29905292-29905336,29905427-29905525,29905634-29905681,29905772-29905819,29905933-29905989	AT1G79500.3  CDS  gene_syn AtkdsA1, T8K14.8, T8K14_8  function Encodes a protein with 3-deoxy-8-phosphooctulonate synthase (KDOP synthase) activity which is involved in the biosynthesis of KDO, a component of cell wall rhamnogalacturonan II.  go_component cytoplasm|GO:0005737||IEA  go_component endomembrane system|GO:0012505||IEA  go_component cytoplasm|GO:0005737||ISS  go_process metabolic process|GO:0008152||ISS  go_process rhamnogalacturonan II biosynthetic process|GO:0010306|12754267|TAS  go_function 3-deoxy-8-phosphooctulonate synthase activity|GO:0008676|12754267|IDA  go_function 3-deoxy-8-phosphooctulonate synthase activity|GO:0008676||ISS  product 2-dehydro-3-deoxyphosphooctonate aldolase / phospho-2-dehydro-3-deoxyoctonate aldolase / 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA)  note AtkdsA1; FUNCTIONS IN: 3-deoxy-8-phosphooctulonate synthase activity; INVOLVED IN: rhamnogalacturonan II biosynthetic process, metabolic process; LOCATED IN: endomembrane system, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase I/KDSA (InterPro:IPR006218), Aldolase-type TIM barrel (InterPro:IPR013785), 3-deoxy-8-phosphooctulonate synthase (InterPro:IPR006269); BEST Arabidopsis thaliana protein match is: ATKDSA2; 3-deoxy-8-phosphooctulonate synthase (TAIR:AT1G16340.3); Has 5591 Blast hits to 5591 proteins in 1105 species: Archae - 46; Bacteria - 2711; Metazoa - 4; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 2791 (source: NCBI BLink).  protein_id AT1G79500.3p  transcript_id AT1G79500.3  protein_id AT1G79500.3p  transcript_id AT1G79500.3  
At1g79500	chr1:029903604	0.0	W/29903604-29903639,29903731-29903828,29904010-29904106,29904364-29904429,29904512-29904571,29904689-29904763,29904847-29904931,29905125-29905183,29905292-29905336,29905427-29905525,29905634-29905681,29905772-29905819,29905933-29905989	AT1G79500.4  CDS  gene_syn AtkdsA1, T8K14.8, T8K14_8  function Encodes a protein with 3-deoxy-8-phosphooctulonate synthase (KDOP synthase) activity which is involved in the biosynthesis of KDO, a component of cell wall rhamnogalacturonan II.  go_component cytoplasm|GO:0005737||IEA  go_component endomembrane system|GO:0012505||IEA  go_component cytoplasm|GO:0005737||ISS  go_process metabolic process|GO:0008152||ISS  go_process rhamnogalacturonan II biosynthetic process|GO:0010306|12754267|TAS  go_function 3-deoxy-8-phosphooctulonate synthase activity|GO:0008676|12754267|IDA  go_function 3-deoxy-8-phosphooctulonate synthase activity|GO:0008676||ISS  product 2-dehydro-3-deoxyphosphooctonate aldolase / phospho-2-dehydro-3-deoxyoctonate aldolase / 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA)  note AtkdsA1; FUNCTIONS IN: 3-deoxy-8-phosphooctulonate synthase activity; INVOLVED IN: rhamnogalacturonan II biosynthetic process, metabolic process; LOCATED IN: endomembrane system, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase I/KDSA (InterPro:IPR006218), Aldolase-type TIM barrel (InterPro:IPR013785), 3-deoxy-8-phosphooctulonate synthase (InterPro:IPR006269); BEST Arabidopsis thaliana protein match is: ATKDSA2; 3-deoxy-8-phosphooctulonate synthase (TAIR:AT1G16340.3); Has 5591 Blast hits to 5591 proteins in 1105 species: Archae - 46; Bacteria - 2711; Metazoa - 4; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 2791 (source: NCBI BLink).  protein_id AT1G79500.4p  transcript_id AT1G79500.4  protein_id AT1G79500.4p  transcript_id AT1G79500.4  
At1g79500	chr1:029903797	0.0	W/29903797-29903828,29904010-29904106,29904364-29904429,29904512-29904571,29904689-29904763,29904847-29904931,29905125-29905183,29905292-29905336,29905427-29905525,29905634-29905681,29905772-29905819,29905910-29906013,29906719-29906824,29907250-29907313,29907708-29907730	AT1G79500.5  CDS  gene_syn AtkdsA1, T8K14.8, T8K14_8  function Encodes a protein with 3-deoxy-8-phosphooctulonate synthase (KDOP synthase) activity which is involved in the biosynthesis of KDO, a component of cell wall rhamnogalacturonan II.  go_component cytoplasm|GO:0005737||IEA  go_component cytoplasm|GO:0005737||ISS  go_process metabolic process|GO:0008152||ISS  go_process rhamnogalacturonan II biosynthetic process|GO:0010306|12754267|TAS  go_function 3-deoxy-8-phosphooctulonate synthase activity|GO:0008676|12754267|IDA  go_function 3-deoxy-8-phosphooctulonate synthase activity|GO:0008676||ISS  product 2-dehydro-3-deoxyphosphooctonate aldolase / phospho-2-dehydro-3-deoxyoctonate aldolase / 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA)  note 2-dehydro-3-deoxyphosphooctonate aldolase / phospho-2-dehydro-3-deoxyoctonate aldolase / 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA); FUNCTIONS IN: 3-deoxy-8-phosphooctulonate synthase activity; INVOLVED IN: rhamnogalacturonan II biosynthetic process, metabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase I/KDSA (InterPro:IPR006218), Aldolase-type TIM barrel (InterPro:IPR013785), 3-deoxy-8-phosphooctulonate synthase (InterPro:IPR006269); BEST Arabidopsis thaliana protein match is: ATKDSA2; 3-deoxy-8-phosphooctulonate synthase (TAIR:AT1G16340.3).  protein_id AT1G79500.5p  transcript_id AT1G79500.5  protein_id AT1G79500.5p  transcript_id AT1G79500.5  
At1g79510	chr1:029908838	0.0	C/29908838-29909175,29908271-29908760	AT1G79510.1  CDS  gene_syn T8K14.7, T8K14_7  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2358 (InterPro:IPR018790); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16320.1); Has 141 Blast hits to 141 proteins in 53 species: Archae - 0; Bacteria - 59; Metazoa - 32; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G79510.1p  transcript_id AT1G79510.1  protein_id AT1G79510.1p  transcript_id AT1G79510.1  
At1g79510	chr1:029908838	0.0	C/29908838-29909175,29908271-29908760	AT1G79510.2  CDS  gene_syn T8K14.7, T8K14_7  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2358 (InterPro:IPR018790); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16320.1); Has 141 Blast hits to 141 proteins in 53 species: Archae - 0; Bacteria - 59; Metazoa - 32; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G79510.2p  transcript_id AT1G79510.2  protein_id AT1G79510.2p  transcript_id AT1G79510.2  
At1g79520	chr1:029914323	0.0	C/29914323-29914515,29913624-29913736,29913289-29913534,29913131-29913211,29912803-29913033,29912369-29912713	AT1G79520.1  CDS  gene_syn T8K14.6, T8K14_6  go_component plasma membrane|GO:0005886|17317660|IDA  go_process cation transport|GO:0006812||IEA  go_function cation transmembrane transporter activity|GO:0008324||IEA  go_component membrane|GO:0016020||ISS  go_process cation transport|GO:0006812||ISS  go_function cation transmembrane transporter activity|GO:0008324||ISS  product cation efflux family protein  note cation efflux family protein; FUNCTIONS IN: cation transmembrane transporter activity; INVOLVED IN: cation transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: cation efflux family protein (TAIR:AT1G16310.1); Has 2614 Blast hits to 2610 proteins in 969 species: Archae - 94; Bacteria - 2007; Metazoa - 40; Fungi - 194; Plants - 104; Viruses - 0; Other Eukaryotes - 175 (source: NCBI BLink).  protein_id AT1G79520.1p  transcript_id AT1G79520.1  protein_id AT1G79520.1p  transcript_id AT1G79520.1  
At1g79529	chr1:029915662	0.0	W/29915662-29916410	AT1G79529.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G79530  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G79529.1  
At1g79530	chr1:029918993	0.0	C/29918993-29919088,29918481-29918554,29918315-29918382,29918197-29918235,29917960-29918060,29917708-29917820,29917520-29917619,29917295-29917441,29917154-29917214,29916966-29917063,29916736-29916878,29916544-29916627,29916370-29916459,29916232-29916286	AT1G79530.1  CDS  gene_syn GAPCP-1, GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1, T8K14.5, T8K14_5  gene GAPCP-1  go_component membrane|GO:0016020|17432890|IDA  go_process glucose metabolic process|GO:0006006||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity|GO:0004365||IEA  go_function binding|GO:0005488||IEA  go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_component plastid|GO:0009536|15533878|ISS  go_process glycolysis|GO:0006096||ISS  go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943||ISS  product GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1); NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase  note GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1 (GAPCP-1); FUNCTIONS IN: NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, binding, catalytic activity, glyceraldehyde-3-phosphate dehydrogenase activity; INVOLVED IN: glycolysis, glucose metabolic process, metabolic process; LOCATED IN: plastid, membrane; EXPRESSED IN: guard cell, leaf; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase (InterPro:IPR000173), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: GAPCP-2; NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase (TAIR:AT1G16300.1); Has 17680 Blast hits to 17670 proteins in 4047 species: Archae - 52; Bacteria - 6630; Metazoa - 1464; Fungi - 1940; Plants - 2552; Viruses - 0; Other Eukaryotes - 5042 (source: NCBI BLink).  protein_id AT1G79530.1p  transcript_id AT1G79530.1  protein_id AT1G79530.1p  transcript_id AT1G79530.1  
At1g79540	chr1:029920334	0.0	C/29920334-29922676	AT1G79540.1  CDS  gene_syn T8K14.4, T8K14_4  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: embryo, male gametophyte, pedicel, flower, seed; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: MEE40 (maternal effect embryo arrest 40) (TAIR:AT3G53700.1); Has 22714 Blast hits to 5886 proteins in 172 species: Archae - 4; Bacteria - 22; Metazoa - 484; Fungi - 465; Plants - 20821; Viruses - 0; Other Eukaryotes - 918 (source: NCBI BLink).  protein_id AT1G79540.1p  transcript_id AT1G79540.1  protein_id AT1G79540.1p  transcript_id AT1G79540.1  
At1g79550	chr1:029926101	0.0	C/29926101-29926295,29925723-29925800,29925374-29925634,29924968-29925285,29924701-29924859,29924347-29924541	AT1G79550.1  CDS  gene_syn PGK, PHOSPHOGLYCERATE KINASE, T8K14.3, T8K14_3  gene PGK  function Encodes cytosolic phosphoglycerate kinase (PGK).  go_component nucleus|GO:0005634|14617066|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process glycolysis|GO:0006096||IEA  go_component cytosol|GO:0005829|10520454|NAS  go_process glycolysis|GO:0006096||ISS  go_function phosphoglycerate kinase activity|GO:0004618|10520454|ISS  product PGK (PHOSPHOGLYCERATE KINASE); phosphoglycerate kinase  note PHOSPHOGLYCERATE KINASE (PGK); FUNCTIONS IN: phosphoglycerate kinase activity; INVOLVED IN: glycolysis; LOCATED IN: cytosol, apoplast, plasma membrane, nucleus, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate kinase, N-terminal (InterPro:IPR015824), Phosphoglycerate kinase (InterPro:IPR001576), Phosphoglycerate kinase, C-terminal (InterPro:IPR015901); BEST Arabidopsis thaliana protein match is: phosphoglycerate kinase, putative (TAIR:AT1G56190.2); Has 8091 Blast hits to 8070 proteins in 1790 species: Archae - 166; Bacteria - 2875; Metazoa - 368; Fungi - 140; Plants - 376; Viruses - 0; Other Eukaryotes - 4166 (source: NCBI BLink).  protein_id AT1G79550.1p  transcript_id AT1G79550.1  protein_id AT1G79550.1p  transcript_id AT1G79550.1  
At1g79550	chr1:029926101	0.0	C/29926101-29926295,29925723-29925800,29925374-29925634,29924968-29925285,29924701-29924859,29924347-29924541	AT1G79550.2  CDS  gene_syn PGK, PHOSPHOGLYCERATE KINASE, T8K14.3, T8K14_3  gene PGK  function Encodes cytosolic phosphoglycerate kinase (PGK).  go_component nucleus|GO:0005634|14617066|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process glycolysis|GO:0006096||IEA  go_component cytosol|GO:0005829|10520454|NAS  go_process glycolysis|GO:0006096||ISS  go_function phosphoglycerate kinase activity|GO:0004618|10520454|ISS  product PGK (PHOSPHOGLYCERATE KINASE); phosphoglycerate kinase  note PHOSPHOGLYCERATE KINASE (PGK); FUNCTIONS IN: phosphoglycerate kinase activity; INVOLVED IN: glycolysis; LOCATED IN: cytosol, apoplast, plasma membrane, nucleus, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate kinase, N-terminal (InterPro:IPR015824), Phosphoglycerate kinase (InterPro:IPR001576), Phosphoglycerate kinase, C-terminal (InterPro:IPR015901); BEST Arabidopsis thaliana protein match is: phosphoglycerate kinase, putative (TAIR:AT1G56190.2); Has 8091 Blast hits to 8070 proteins in 1790 species: Archae - 166; Bacteria - 2875; Metazoa - 368; Fungi - 140; Plants - 376; Viruses - 0; Other Eukaryotes - 4166 (source: NCBI BLink).  protein_id AT1G79550.2p  transcript_id AT1G79550.2  protein_id AT1G79550.2p  transcript_id AT1G79550.2  
At1g79560	chr1:029926976	0.0	W/29926976-29927404,29927634-29927818,29928025-29928251,29928468-29928745,29928978-29929055,29929135-29929377,29929481-29929621,29929726-29929893,29929989-29930101,29930201-29930417,29930511-29930582,29930672-29930791,29930885-29931001,29931112-29931288,29931472-29931591,29931693-29931767,29931860-29931967,29932060-29932140,29932231-29932308	AT1G79560.1  CDS  gene_syn EMB1047, EMBRYO DEFECTIVE 1047, FTSH PROTEASE 12, FTSH12, T8K14.2, T8K14_2  gene FTSH12  function encodes an FtsH protease that is localized to the chloroplast  go_component chloroplast|GO:0009507|18431481|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component chloroplast|GO:0009507|14630971|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function ATP-dependent peptidase activity|GO:0004176|14630971|ISS  go_function metallopeptidase activity|GO:0008237||ISS  go_function ATPase activity|GO:0016887||ISS  product FTSH12 (FTSH PROTEASE 12); ATP-dependent peptidase/ ATPase/ metallopeptidase  note FTSH PROTEASE 12 (FTSH12); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FTSH1 (FtsH protease 1); ATP-dependent peptidase/ ATPase/ metallopeptidase (TAIR:AT1G50250.1); Has 23869 Blast hits to 22334 proteins in 1825 species: Archae - 851; Bacteria - 7170; Metazoa - 3963; Fungi - 2330; Plants - 1477; Viruses - 17; Other Eukaryotes - 8061 (source: NCBI BLink).  protein_id AT1G79560.1p  transcript_id AT1G79560.1  protein_id AT1G79560.1p  transcript_id AT1G79560.1  
At1g79570	chr1:029934742	0.0	C/29934742-29937540,29934597-29934668,29934184-29934336,29933931-29934094,29933685-29933832,29933469-29933591,29933164-29933251,29932856-29933055	AT1G79570.1  CDS  gene_syn T8K14.1, T8K14_1  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, protein kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G16270.1); Has 86578 Blast hits to 85332 proteins in 3442 species: Archae - 47; Bacteria - 6840; Metazoa - 39346; Fungi - 6791; Plants - 18389; Viruses - 433; Other Eukaryotes - 14732 (source: NCBI BLink).  protein_id AT1G79570.1p  transcript_id AT1G79570.1  protein_id AT1G79570.1p  transcript_id AT1G79570.1  
At1g79580	chr1:029942736	0.0	C/29942736-29942925,29941761-29942032,29941020-29941673	AT1G79580.1  CDS  gene_syn ANAC033, ARABIDOPSIS NAC DOMAIN PROTEIN 033, F20B17.1, F20B17_1, SMB, SOMBRERO  gene SMB  function NAC-domain protein. Involved in root cap development. Involved in a regulatory feedback loop with FEZ. FEZ activates SMB in hte root cap daughter cells soon after division, and SMB in turn represses FEZ expression in these cells, thereby preventing further stem cell divisions.  go_component nucleus|GO:0005634|19081078|IDA  go_process multicellular organismal development|GO:0007275||ISS  go_process positive regulation of cell fate commitment|GO:0010455|19081078|IMP  go_process root cap development|GO:0048829|19081078|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product SMB (SOMBRERO); transcription factor  note SOMBRERO (SMB); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, positive regulation of cell fate commitment, root cap development; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC015 (Arabidopsis NAC domain containing protein 15); transcription factor (TAIR:AT1G33280.1); Has 3496 Blast hits to 2829 proteins in 268 species: Archae - 0; Bacteria - 265; Metazoa - 920; Fungi - 73; Plants - 1660; Viruses - 0; Other Eukaryotes - 578 (source: NCBI BLink).  protein_id AT1G79580.1p  transcript_id AT1G79580.1  protein_id AT1G79580.1p  transcript_id AT1G79580.1  
At1g79580	chr1:029942736	0.0	C/29942736-29942925,29941761-29942032,29941020-29941673	AT1G79580.2  CDS  gene_syn ANAC033, ARABIDOPSIS NAC DOMAIN PROTEIN 033, F20B17.1, F20B17_1, SMB, SOMBRERO  gene SMB  function NAC-domain protein. Involved in root cap development. Involved in a regulatory feedback loop with FEZ. FEZ activates SMB in hte root cap daughter cells soon after division, and SMB in turn represses FEZ expression in these cells, thereby preventing further stem cell divisions.  go_component nucleus|GO:0005634|19081078|IDA  go_process multicellular organismal development|GO:0007275||ISS  go_process positive regulation of cell fate commitment|GO:0010455|19081078|IMP  go_process root cap development|GO:0048829|19081078|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product SMB (SOMBRERO); transcription factor  note SOMBRERO (SMB); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, positive regulation of cell fate commitment, root cap development; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC015 (Arabidopsis NAC domain containing protein 15); transcription factor (TAIR:AT1G33280.1); Has 3496 Blast hits to 2829 proteins in 268 species: Archae - 0; Bacteria - 265; Metazoa - 920; Fungi - 73; Plants - 1660; Viruses - 0; Other Eukaryotes - 578 (source: NCBI BLink).  protein_id AT1G79580.2p  transcript_id AT1G79580.2  protein_id AT1G79580.2p  transcript_id AT1G79580.2  
At1g79580	chr1:029942736	0.0	C/29942736-29942925,29941761-29942032,29941020-29941673	AT1G79580.3  CDS  gene_syn ANAC033, ARABIDOPSIS NAC DOMAIN PROTEIN 033, F20B17.1, F20B17_1, SMB, SOMBRERO  gene SMB  function NAC-domain protein. Involved in root cap development. Involved in a regulatory feedback loop with FEZ. FEZ activates SMB in hte root cap daughter cells soon after division, and SMB in turn represses FEZ expression in these cells, thereby preventing further stem cell divisions.  go_component nucleus|GO:0005634|19081078|IDA  go_process multicellular organismal development|GO:0007275||ISS  go_process positive regulation of cell fate commitment|GO:0010455|19081078|IMP  go_process root cap development|GO:0048829|19081078|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product SMB (SOMBRERO); transcription factor  note SOMBRERO (SMB); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, positive regulation of cell fate commitment, root cap development; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC015 (Arabidopsis NAC domain containing protein 15); transcription factor (TAIR:AT1G33280.1); Has 3496 Blast hits to 2829 proteins in 268 species: Archae - 0; Bacteria - 265; Metazoa - 920; Fungi - 73; Plants - 1660; Viruses - 0; Other Eukaryotes - 578 (source: NCBI BLink).  protein_id AT1G79580.3p  transcript_id AT1G79580.3  protein_id AT1G79580.3p  transcript_id AT1G79580.3  
At1g79590	chr1:029947064	0.0	W/29947064-29947281,29947401-29947606,29947702-29947802,29947884-29947928,29948173-29948304	AT1G79590.1  CDS  gene_syn ATSYP52, F20B17.2, F20B17_2, SYNTAXIN OF PLANTS 52, SYP52  gene SYP52  function Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.  go_component vacuole|GO:0005773|15539469|IDA  go_component endosome membrane|GO:0010008|11115874|NAS  go_component endosome membrane|GO:0010008|11115874|TAS  go_process vesicle-mediated transport|GO:0016192|11115874|TAS  go_function SNAP receptor activity|GO:0005484|11115874|TAS  product SYP52 (SYNTAXIN OF PLANTS 52); SNAP receptor  note SYNTAXIN OF PLANTS 52 (SYP52); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endosome membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012); BEST Arabidopsis thaliana protein match is: SYP51 (SYNTAXIN OF PLANTS 51); SNAP receptor (TAIR:AT1G16240.2); Has 566 Blast hits to 566 proteins in 138 species: Archae - 0; Bacteria - 2; Metazoa - 166; Fungi - 172; Plants - 148; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT1G79590.1p  transcript_id AT1G79590.1  protein_id AT1G79590.1p  transcript_id AT1G79590.1  
At1g79590	chr1:029947064	0.0	W/29947064-29947281,29947401-29947606,29947702-29947802,29947884-29947928,29948173-29948304	AT1G79590.2  CDS  gene_syn ATSYP52, F20B17.2, F20B17_2, SYNTAXIN OF PLANTS 52, SYP52  gene SYP52  function Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.  go_component vacuole|GO:0005773|15539469|IDA  go_component endosome membrane|GO:0010008|11115874|NAS  go_component endosome membrane|GO:0010008|11115874|TAS  go_process vesicle-mediated transport|GO:0016192|11115874|TAS  go_function SNAP receptor activity|GO:0005484|11115874|TAS  product SYP52 (SYNTAXIN OF PLANTS 52); SNAP receptor  note SYNTAXIN OF PLANTS 52 (SYP52); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endosome membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012); BEST Arabidopsis thaliana protein match is: SYP51 (SYNTAXIN OF PLANTS 51); SNAP receptor (TAIR:AT1G16240.2); Has 566 Blast hits to 566 proteins in 138 species: Archae - 0; Bacteria - 2; Metazoa - 166; Fungi - 172; Plants - 148; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT1G79590.2p  transcript_id AT1G79590.2  protein_id AT1G79590.2p  transcript_id AT1G79590.2  
At1g79600	chr1:029952184	0.0	C/29952184-29952516,29951881-29952108,29950318-29951763,29950105-29950233	AT1G79600.1  CDS  gene_syn F20B17.3, F20B17_3  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_component plastoglobule|GO:0010287|16461379|IDA  product ABC1 family protein  note ABC1 family protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast, plastoglobule; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase, core (InterPro:IPR000719), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ABC1 family protein (TAIR:AT1G71810.1); Has 7745 Blast hits to 7727 proteins in 1113 species: Archae - 67; Bacteria - 2677; Metazoa - 379; Fungi - 315; Plants - 357; Viruses - 14; Other Eukaryotes - 3936 (source: NCBI BLink).  protein_id AT1G79600.1p  transcript_id AT1G79600.1  protein_id AT1G79600.1p  transcript_id AT1G79600.1  
At1g79610	chr1:029956884	0.0	C/29956884-29957070,29956734-29956785,29956486-29956545,29956336-29956360,29956138-29956223,29955938-29956049,29955786-29955848,29955659-29955678,29955481-29955575,29955203-29955231,29955084-29955115,29954940-29954987,29954784-29954844,29954596-29954693,29954420-29954495,29954300-29954319,29954086-29954183,29953892-29954001,29953675-29953758,29953451-29953551,29953233-29953333,29953089-29953138	AT1G79610.1  CDS  gene_syn F20B17.4, F20B17_4  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812||IEA  go_process sodium ion transport|GO:0006814||IEA  go_process regulation of pH|GO:0006885||IEA  go_function solute:hydrogen antiporter activity|GO:0015299||IEA  go_function sodium:hydrogen antiporter activity|GO:0015385||IEA  go_process sodium ion transport|GO:0006814||ISS  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product sodium proton exchanger, putative (NHX6)  note sodium proton exchanger, putative (NHX6); FUNCTIONS IN: solute:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport, sodium ion transport, regulation of pH; LOCATED IN: integral to membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Na+/H+ exchanger, subfamily (InterPro:IPR004709), Cation/H+ exchanger, conserved region (InterPro:IPR018422), Na+/H+ exchanger, isoform 5/6/8, conserved region (InterPro:IPR018409), Cation/H+ exchanger (InterPro:IPR006153), Na+/H+ exchanger, conserved region (InterPro:IPR018406); BEST Arabidopsis thaliana protein match is: NHX5; sodium ion transmembrane transporter/ sodium:hydrogen antiporter (TAIR:AT1G54370.1); Has 4010 Blast hits to 4005 proteins in 1041 species: Archae - 71; Bacteria - 2418; Metazoa - 735; Fungi - 95; Plants - 280; Viruses - 0; Other Eukaryotes - 411 (source: NCBI BLink).  protein_id AT1G79610.1p  transcript_id AT1G79610.1  protein_id AT1G79610.1p  transcript_id AT1G79610.1  
At1g79620	chr1:029962066	0.0	C/29962066-29962174,29961857-29961980,29961663-29961734,29961497-29961571,29961324-29961395,29961068-29961229,29960911-29960985,29960757-29960828,29960602-29960673,29960446-29960514,29960290-29960364,29960133-29960204,29959918-29960052,29959364-29959839,29959136-29959288,29958842-29958981,29958526-29958745,29958216-29958451,29957633-29958139	AT1G79620.1  CDS  gene_syn F20B17.5, F20B17_5  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / protein kinase family protein (TAIR:AT5G49760.1); Has 119340 Blast hits to 95045 proteins in 3345 species: Archae - 83; Bacteria - 10049; Metazoa - 44998; Fungi - 7057; Plants - 39657; Viruses - 407; Other Eukaryotes - 17089 (source: NCBI BLink).  protein_id AT1G79620.1p  transcript_id AT1G79620.1  protein_id AT1G79620.1p  transcript_id AT1G79620.1  
At1g79630	chr1:029964020	0.0	C/29964020-29964382,29963816-29963933,29963505-29963728,29962931-29963410	AT1G79630.2  CDS  gene_syn F20B17.6, F20B17_6  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C family protein / PP2C family protein  note protein phosphatase 2C family protein / PP2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C family protein / PP2C family protein (TAIR:AT1G16220.1); Has 3647 Blast hits to 3645 proteins in 219 species: Archae - 0; Bacteria - 2; Metazoa - 1117; Fungi - 399; Plants - 1261; Viruses - 5; Other Eukaryotes - 863 (source: NCBI BLink).  protein_id AT1G79630.2p  transcript_id AT1G79630.2  protein_id AT1G79630.2p  transcript_id AT1G79630.2  
At1g79630	chr1:029964906	0.0	C/29964906-29964920,29964020-29964448,29963816-29963933,29963505-29963728,29962931-29963410	AT1G79630.3  CDS  gene_syn F20B17.6, F20B17_6  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C family protein / PP2C family protein  note protein phosphatase 2C family protein / PP2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C family protein / PP2C family protein (TAIR:AT1G16220.1); Has 3668 Blast hits to 3664 proteins in 220 species: Archae - 0; Bacteria - 2; Metazoa - 1137; Fungi - 402; Plants - 1257; Viruses - 5; Other Eukaryotes - 865 (source: NCBI BLink).  protein_id AT1G79630.3p  transcript_id AT1G79630.3  protein_id AT1G79630.3p  transcript_id AT1G79630.3  
At1g79630	chr1:029964906	0.0	C/29964906-29965169,29964020-29964448,29963816-29963933,29963505-29963728,29962931-29963410	AT1G79630.1  CDS  gene_syn F20B17.6, F20B17_6  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C family protein / PP2C family protein  note protein phosphatase 2C family protein / PP2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C family protein / PP2C family protein (TAIR:AT1G16220.1); Has 3680 Blast hits to 3668 proteins in 220 species: Archae - 0; Bacteria - 2; Metazoa - 1137; Fungi - 402; Plants - 1261; Viruses - 5; Other Eukaryotes - 873 (source: NCBI BLink).  protein_id AT1G79630.1p  transcript_id AT1G79630.1  protein_id AT1G79630.1p  transcript_id AT1G79630.1  
At1g79640	chr1:029971382	0.0	C/29971382-29971387,29970932-29971093,29970564-29970818,29970288-29970412,29970113-29970157,29969940-29970021,29969800-29969868,29969541-29969711,29969371-29969436,29969176-29969244,29968994-29969089,29968782-29968849,29968434-29968664,29968108-29968220,29967916-29968010,29967768-29967812,29967523-29967642,29967379-29967427,29967212-29967276,29967060-29967121,29966913-29966982	AT1G79640.1  CDS  gene_syn F20B17.7, F20B17_7  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G14720.1); Has 87523 Blast hits to 86334 proteins in 2462 species: Archae - 59; Bacteria - 7656; Metazoa - 38383; Fungi - 7801; Plants - 17256; Viruses - 456; Other Eukaryotes - 15912 (source: NCBI BLink).  protein_id AT1G79640.1p  transcript_id AT1G79640.1  protein_id AT1G79640.1p  transcript_id AT1G79640.1  
At1g79650	chr1:029975067	0.0	C/29975067-29975132,29974651-29974812,29974392-29974430,29974280-29974309,29974116-29974186,29973711-29973888,29973509-29973634,29973361-29973426,29973031-29973078,29972822-29972931,29972615-29972699,29972406-29972522	AT1G79650.2  CDS  gene_syn F20B17.8, F20B17_8, RAD23  gene RAD23  function putative DNA repair protein RAD23  go_component nucleus|GO:0005634||IEA  go_process nucleotide-excision repair|GO:0006289||IEA  go_process protein modification process|GO:0006464||IEA  go_process proteasomal ubiquitin-dependent protein catabolic process|GO:0043161||IEA  go_function damaged DNA binding|GO:0003684||IEA  go_process base-excision repair|GO:0006284||ISS  go_function damaged DNA binding|GO:0003684||ISS  product RAD23; damaged DNA binding  note RAD23; FUNCTIONS IN: damaged DNA binding; INVOLVED IN: proteasomal ubiquitin-dependent protein catabolic process, protein modification process, base-excision repair, nucleotide-excision repair; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), UV excision repair protein Rad23 (InterPro:IPR004806), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin (InterPro:IPR000626), UV excision repair protein Rad23, C-terminal (InterPro:IPR014761), XPC-binding domain (InterPro:IPR015360), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: DNA repair protein RAD23, putative (TAIR:AT1G16190.1); Has 6464 Blast hits to 3395 proteins in 534 species: Archae - 0; Bacteria - 33; Metazoa - 2917; Fungi - 805; Plants - 1498; Viruses - 108; Other Eukaryotes - 1103 (source: NCBI BLink).  protein_id AT1G79650.2p  transcript_id AT1G79650.2  protein_id AT1G79650.2p  transcript_id AT1G79650.2  
At1g79650	chr1:029975067	0.0	C/29975067-29975132,29974651-29974812,29974392-29974430,29974280-29974327,29974116-29974186,29973711-29973888,29973509-29973634,29973361-29973426,29972822-29972919,29972615-29972699,29972406-29972522	AT1G79650.3  CDS  gene_syn F20B17.8, F20B17_8, RAD23  gene RAD23  function putative DNA repair protein RAD23  go_component nucleus|GO:0005634||IEA  go_process nucleotide-excision repair|GO:0006289||IEA  go_process protein modification process|GO:0006464||IEA  go_process proteasomal ubiquitin-dependent protein catabolic process|GO:0043161||IEA  go_function damaged DNA binding|GO:0003684||IEA  go_process base-excision repair|GO:0006284||ISS  go_function damaged DNA binding|GO:0003684||ISS  product RAD23; damaged DNA binding  note RAD23; FUNCTIONS IN: damaged DNA binding; INVOLVED IN: proteasomal ubiquitin-dependent protein catabolic process, protein modification process, base-excision repair, nucleotide-excision repair; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), UV excision repair protein Rad23 (InterPro:IPR004806), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin (InterPro:IPR000626), UV excision repair protein Rad23, C-terminal (InterPro:IPR014761), XPC-binding domain (InterPro:IPR015360), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: DNA repair protein RAD23, putative (TAIR:AT1G16190.1); Has 6542 Blast hits to 3430 proteins in 549 species: Archae - 0; Bacteria - 65; Metazoa - 2923; Fungi - 817; Plants - 1487; Viruses - 109; Other Eukaryotes - 1141 (source: NCBI BLink).  protein_id AT1G79650.3p  transcript_id AT1G79650.3  protein_id AT1G79650.3p  transcript_id AT1G79650.3  
At1g79650	chr1:029975067	0.0	C/29975067-29975132,29974651-29974812,29974392-29974430,29974280-29974327,29974116-29974186,29973711-29973888,29973509-29973634,29973361-29973426,29973031-29973078,29972822-29972931,29972615-29972699,29972406-29972522	AT1G79650.1  CDS  gene_syn F20B17.8, F20B17_8, RAD23  gene RAD23  function putative DNA repair protein RAD23  go_component nucleus|GO:0005634||IEA  go_process nucleotide-excision repair|GO:0006289||IEA  go_process protein modification process|GO:0006464||IEA  go_process proteasomal ubiquitin-dependent protein catabolic process|GO:0043161||IEA  go_function damaged DNA binding|GO:0003684||IEA  go_process base-excision repair|GO:0006284||ISS  go_function damaged DNA binding|GO:0003684||ISS  product RAD23; damaged DNA binding  note RAD23; FUNCTIONS IN: damaged DNA binding; INVOLVED IN: proteasomal ubiquitin-dependent protein catabolic process, protein modification process, base-excision repair, nucleotide-excision repair; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), UV excision repair protein Rad23 (InterPro:IPR004806), Ubiquitin (InterPro:IPR000626), UV excision repair protein Rad23, C-terminal (InterPro:IPR014761), XPC-binding domain (InterPro:IPR015360), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: DNA repair protein RAD23, putative (TAIR:AT1G16190.1); Has 6561 Blast hits to 3450 proteins in 549 species: Archae - 0; Bacteria - 65; Metazoa - 2937; Fungi - 814; Plants - 1489; Viruses - 108; Other Eukaryotes - 1148 (source: NCBI BLink).  protein_id AT1G79650.1p  transcript_id AT1G79650.1  protein_id AT1G79650.1p  transcript_id AT1G79650.1  
At1g79660	chr1:029976294	0.0	W/29976294-29976575	AT1G79660.1  CDS  gene_syn F20B17.9, F20B17_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16170.1); Has 22 Blast hits to 22 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G79660.1p  transcript_id AT1G79660.1  protein_id AT1G79660.1p  transcript_id AT1G79660.1  
At1g79670	chr1:029978413	0.0	C/29978413-29979337,29978188-29978310,29976887-29978094	AT1G79670.1  CDS  gene_syn F20B17.27, F20B17_27, RESISTANCE TO FUSARIUM OXYSPORUM 1, RFO1, WAKL22  gene RFO1  function Encodes a receptor-like kinase that does not contain an extracellular leucine-rich repeat domain. A novel type of dominant disease-resistance protein that confers resistance to a broad spectrum of Fusarium races.  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_component cell wall|GO:0005618||ISS  go_process response to fungus|GO:0009620|15965251|IMP  go_function kinase activity|GO:0016301||ISS  product RFO1 (RESISTANCE TO FUSARIUM OXYSPORUM 1); kinase  note RESISTANCE TO FUSARIUM OXYSPORUM 1 (RFO1); FUNCTIONS IN: kinase activity; INVOLVED IN: response to fungus; LOCATED IN: endomembrane system, integral to membrane, cell wall; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: WAKL2 (wall associated kinase-like 2); kinase (TAIR:AT1G16130.1); Has 87312 Blast hits to 86067 proteins in 2998 species: Archae - 55; Bacteria - 7634; Metazoa - 38456; Fungi - 6874; Plants - 19072; Viruses - 456; Other Eukaryotes - 14765 (source: NCBI BLink).  protein_id AT1G79670.1p  transcript_id AT1G79670.1  protein_id AT1G79670.1p  transcript_id AT1G79670.1  
At1g79670	chr1:029978905	0.0	C/29978905-29979337,29978413-29978793,29978188-29978310,29976887-29978094	AT1G79670.2  CDS  gene_syn F20B17.27, F20B17_27, RESISTANCE TO FUSARIUM OXYSPORUM 1, RFO1, WAKL22  gene RFO1  function Encodes a receptor-like kinase that does not contain an extracellular leucine-rich repeat domain. A novel type of dominant disease-resistance protein that confers resistance to a broad spectrum of Fusarium races.  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_component cell wall|GO:0005618||ISS  go_process response to fungus|GO:0009620|15965251|IMP  go_function kinase activity|GO:0016301||ISS  product RFO1 (RESISTANCE TO FUSARIUM OXYSPORUM 1); kinase  note RESISTANCE TO FUSARIUM OXYSPORUM 1 (RFO1); FUNCTIONS IN: kinase activity; INVOLVED IN: response to fungus; LOCATED IN: endomembrane system, integral to membrane, cell wall; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: WAKL2 (wall associated kinase-like 2); kinase (TAIR:AT1G16130.1); Has 87237 Blast hits to 86019 proteins in 2997 species: Archae - 55; Bacteria - 7634; Metazoa - 38418; Fungi - 6874; Plants - 19037; Viruses - 456; Other Eukaryotes - 14763 (source: NCBI BLink).  protein_id AT1G79670.2p  transcript_id AT1G79670.2  protein_id AT1G79670.2p  transcript_id AT1G79670.2  
At1g79680	chr1:029981783	0.0	C/29981783-29982749,29981560-29981676,29980188-29981413	AT1G79680.1  CDS  gene_syn F20B17.10, F20B17_10  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function kinase activity|GO:0016301||ISS  product wall-associated kinase, putative  note wall-associated kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695), Protein kinase, ATP binding site (InterPro:IPR017441), EGF-like calcium-binding, conserved site (InterPro:IPR018097), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G69730.1); Has 88058 Blast hits to 86470 proteins in 3117 species: Archae - 48; Bacteria - 7628; Metazoa - 39318; Fungi - 6851; Plants - 18895; Viruses - 453; Other Eukaryotes - 14865 (source: NCBI BLink).  protein_id AT1G79680.1p  transcript_id AT1G79680.1  protein_id AT1G79680.1p  transcript_id AT1G79680.1  
At1g79690	chr1:029985360	0.0	W/29985360-29985424,29985777-29985956,29986029-29986106,29986299-29986395,29986483-29986616,29986790-29986871,29986986-29987072,29987162-29987268,29987471-29987642,29987728-29987975,29988078-29988159,29988339-29988404,29988540-29988617,29988719-29988814,29988905-29989011,29989091-29989259,29989360-29989443,29989518-29989612,29989693-29989783,29989869-29990015,29990118-29990171	AT1G79690.1  CDS  gene_syn Arabidopsis thaliana Nudix hydrolase homolog 3, F20B17.11, F20B17_11, atnudt3  gene atnudt3  go_component vacuole|GO:0005773|15539469|IDA  go_component cytosol|GO:0005829|15878881|RCA  go_function hydrolase activity|GO:0016787||IEA  go_function hydrolase activity|GO:0016787||ISS  product atnudt3 (Arabidopsis thaliana Nudix hydrolase homolog 3); hydrolase  note Arabidopsis thaliana Nudix hydrolase homolog 3 (atnudt3); FUNCTIONS IN: hydrolase activity; LOCATED IN: cytosol, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), NUDIX hydrolase, core (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1); isopentenyl-diphosphate delta-isomerase (TAIR:AT5G16440.1); Has 1689 Blast hits to 1689 proteins in 505 species: Archae - 17; Bacteria - 1144; Metazoa - 42; Fungi - 50; Plants - 114; Viruses - 0; Other Eukaryotes - 322 (source: NCBI BLink).  protein_id AT1G79690.1p  transcript_id AT1G79690.1  protein_id AT1G79690.1p  transcript_id AT1G79690.1  
At1g79700	chr1:029993486	0.0	C/29993486-29993658,29993322-29993404,29993080-29993088,29992638-29992726,29992089-29992162,29991955-29992005,29991804-29991880,29990440-29990825	AT1G79700.2  CDS  gene_syn F20B17.12, F20B17_12  go_component nucleus|GO:0005634|10948255|IC  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process organ morphogenesis|GO:0009887|8742707|ISS  go_function DNA binding|GO:0003677|8742707|ISS  go_function transcription factor activity|GO:0003700|10948255|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ovule development protein, putative  note ovule development protein, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: organ morphogenesis, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ovule development protein, putative (TAIR:AT1G16060.1); Has 4704 Blast hits to 3233 proteins in 195 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 4627; Viruses - 2; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT1G79700.2p  transcript_id AT1G79700.2  protein_id AT1G79700.2p  transcript_id AT1G79700.2  
At1g79700	chr1:029993486	0.0	C/29993486-29993658,29993322-29993404,29993080-29993088,29992638-29992726,29992089-29992162,29991955-29992005,29991834-29991880,29990440-29990825	AT1G79700.1  CDS  gene_syn F20B17.12, F20B17_12  go_component nucleus|GO:0005634|10948255|IC  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process organ morphogenesis|GO:0009887|8742707|ISS  go_function DNA binding|GO:0003677|8742707|ISS  go_function transcription factor activity|GO:0003700|10948255|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ovule development protein, putative  note ovule development protein, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: organ morphogenesis, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ovule development protein, putative (TAIR:AT1G16060.1); Has 2692 Blast hits to 2231 proteins in 151 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2644; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT1G79700.1p  transcript_id AT1G79700.1  protein_id AT1G79700.1p  transcript_id AT1G79700.1  
At1g79710	chr1:029995137	0.0	W/29995137-29995512,29995591-29995850,29995939-29996034,29996109-29996279,29996398-29996988	AT1G79710.1  CDS  gene_syn F19K16.31, F19K16_31  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product integral membrane transporter family protein  note integral membrane transporter family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily, general substrate transporter (InterPro:IPR016196), Biopterin transport-related protein BT1 (InterPro:IPR004324); BEST Arabidopsis thaliana protein match is: integral membrane transporter family protein (TAIR:AT5G25050.1); Has 694 Blast hits to 685 proteins in 112 species: Archae - 4; Bacteria - 113; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 436 (source: NCBI BLink).  protein_id AT1G79710.1p  transcript_id AT1G79710.1  protein_id AT1G79710.1p  transcript_id AT1G79710.1  
At1g79720	chr1:029998774	0.0	C/29998774-29998951,29997259-29998535	AT1G79720.1  CDS  gene_syn F19K16.30, F19K16_30  go_component apoplast|GO:0048046|18538804|IDA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: chloroplast nucleoid DNA-binding protein, putative (TAIR:AT5G10770.1); Has 2097 Blast hits to 2083 proteins in 208 species: Archae - 0; Bacteria - 2; Metazoa - 256; Fungi - 574; Plants - 1136; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).  protein_id AT1G79720.1p  transcript_id AT1G79720.1  protein_id AT1G79720.1p  transcript_id AT1G79720.1  
At1g79730	chr1:030003374	0.0	C/30003374-30003969,30003227-30003295,30003039-30003146,30002774-30002954,30002608-30002684,30002405-30002524,30001870-30001975,30001551-30001637,30001377-30001445,30001220-30001288,30000984-30001127,30000743-30000886	AT1G79730.1  CDS  gene_syn EARLY FLOWERING 7, ELF7, F19K16.29, F19K16_29  gene ELF7  function Encodes a PAF1 homolog that is involved in the control of flowering time by elevating FLC expression to a level that creates the vernalization-responsive, winter-annual habit. Yeast PAF1 is a component of a five-member complex that associates with RNA pol II and is thought to regulate gene expression by recruiting SET1 (a histone 3 Lys 4 [H3-K4] methyl transferase) to the initially transcribed [5 ] regions of target chromatin. Mutants display reduced H3-K4 methylation in both FLC and FLM chromatin.  go_process negative regulation of flower development|GO:0009910|15520273|IMP  go_process histone methylation|GO:0016571|15520273|IMP  go_function molecular_function|GO:0003674||ND  product ELF7 (EARLY FLOWERING 7)  note EARLY FLOWERING 7 (ELF7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: negative regulation of flower development, histone methylation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II-associated, Paf1 (InterPro:IPR007133); Has 68695 Blast hits to 32071 proteins in 1350 species: Archae - 107; Bacteria - 8569; Metazoa - 28345; Fungi - 8605; Plants - 11960; Viruses - 2106; Other Eukaryotes - 9003 (source: NCBI BLink).  protein_id AT1G79730.1p  transcript_id AT1G79730.1  protein_id AT1G79730.1p  transcript_id AT1G79730.1  
At1g79740	chr1:030006715	0.0	C/30006715-30006715,30005074-30006627,30004367-30004767	AT1G79740.1  CDS  gene_syn F19K16.28, F19K16_28  go_function DNA binding|GO:0003677||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product DNA binding / protein dimerization  note DNA binding / protein dimerization; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021), Protein of unknown function DUF1544 (InterPro:IPR011523); BEST Arabidopsis thaliana protein match is: DNA binding / protein dimerization (TAIR:AT4G15020.2); Has 467 Blast hits to 429 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 3; Plants - 456; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G79740.1p  transcript_id AT1G79740.1  protein_id AT1G79740.1p  transcript_id AT1G79740.1  
At1g79750	chr1:030011150	0.0	C/30011150-30011179,30010654-30011061,30010481-30010555,30010236-30010387,30010045-30010150,30009881-30009946,30009703-30009798,30009547-30009618,30009369-30009452,30009176-30009274,30009007-30009054,30008869-30008922,30008697-30008795,30008510-30008599,30008322-30008399,30008162-30008236,30007869-30008088,30007655-30007743	AT1G79750.1  CDS  gene_syn ATNADP-ME4, F19K16.27, F19K16_27, NADP-malic enzyme 4  gene ATNADP-ME4  function The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME4 is localized to chloroplasts. The gene is expressed throughout the whole plant and during embryogenesis and germination. A possible involvement in the fatty acid biosynthesis has been proposed.  go_component chloroplast|GO:0009507|16113210|IDA  go_process malate metabolic process|GO:0006108|16113210|TAS  go_process malate metabolic process|GO:0006108||ISS  go_process fatty acid biosynthetic process|GO:0006633|16113210|TAS  go_process embryonic development ending in seed dormancy|GO:0009793|16113210|IEP  go_process seed germination|GO:0009845|16113210|IEP  go_function malic enzyme activity|GO:0004470||ISS  go_function malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|GO:0004473|16113210|IDA  go_function oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor|GO:0016652||ISS  product ATNADP-ME4 (NADP-malic enzyme 4); malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor  note NADP-malic enzyme 4 (ATNADP-ME4); FUNCTIONS IN: oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor, malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity, malic enzyme activity; INVOLVED IN: embryonic development ending in seed dormancy, malate metabolic process, seed germination, fatty acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Malic oxidoreductase (InterPro:IPR001891), Malic enzyme, NAD-binding (InterPro:IPR012302), Malic enzyme, conserved site (InterPro:IPR015884), Malic enzyme, N-terminal (InterPro:IPR012301), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: ATNADP-ME2 (NADP-malic enzyme 2); malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor (TAIR:AT5G11670.1); Has 6077 Blast hits to 6066 proteins in 1334 species: Archae - 86; Bacteria - 3250; Metazoa - 555; Fungi - 152; Plants - 276; Viruses - 0; Other Eukaryotes - 1758 (source: NCBI BLink).  protein_id AT1G79750.1p  transcript_id AT1G79750.1  protein_id AT1G79750.1p  transcript_id AT1G79750.1  
At1g79760	chr1:030012054	0.0	W/30012054-30012445,30012535-30013042	AT1G79760.1  CDS  gene_syn DOWNSTREAM TARGET OF AGL15-4, DTA4, F19K16.26, F19K16_26  gene DTA4  function Identified as target of the AGL15 binding motif CArG.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DTA4 (DOWNSTREAM TARGET OF AGL15-4)  note DOWNSTREAM TARGET OF AGL15-4 (DTA4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, inflorescence meristem, hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; Has 27 Blast hits to 27 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G79760.1p  transcript_id AT1G79760.1  protein_id AT1G79760.1p  transcript_id AT1G79760.1  
At1g79770	chr1:030014371	0.0	W/30014371-30014874	AT1G79770.1  CDS  gene_syn F20B17.20, F20B17_20  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: stamen, leaf; EXPRESSED DURING: LP.06 six leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1677, plant (InterPro:IPR012876); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25840.1); Has 132 Blast hits to 131 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G79770.1p  transcript_id AT1G79770.1  protein_id AT1G79770.1p  transcript_id AT1G79770.1  
At1g79780	chr1:030015930	0.0	W/30015930-30016141,30016434-30016569,30016641-30016856	AT1G79780.1  CDS  gene_syn F20B17.26, F20B17_26  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT3G16300.1); Has 167 Blast hits to 167 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G79780.1p  transcript_id AT1G79780.1  protein_id AT1G79780.1p  transcript_id AT1G79780.1  
At1g79790	chr1:030017830	0.0	C/30017830-30017904,30017713-30017764,30017372-30017632,30017185-30017272,30016987-30017107	AT1G79790.2  CDS  gene_syn F20B17.21, F20B17_21  go_component chloroplast|GO:0009507|18431481|IDA  go_function hydrolase activity|GO:0016787||ISS  product haloacid dehalogenase-like hydrolase family protein  note haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); Has 718 Blast hits to 718 proteins in 231 species: Archae - 0; Bacteria - 391; Metazoa - 142; Fungi - 36; Plants - 14; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).  protein_id AT1G79790.2p  transcript_id AT1G79790.2  protein_id AT1G79790.2p  transcript_id AT1G79790.2  
At1g79790	chr1:030017972	0.0	C/30017972-30018186,30017830-30017905,30017713-30017764,30017518-30017632,30017372-30017442,30017185-30017272,30016987-30017107	AT1G79790.1  CDS  gene_syn F20B17.21, F20B17_21  go_component chloroplast|GO:0009507|18431481|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity|GO:0016787||ISS  product haloacid dehalogenase-like hydrolase family protein  note haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); Has 955 Blast hits to 955 proteins in 292 species: Archae - 2; Bacteria - 583; Metazoa - 141; Fungi - 36; Plants - 14; Viruses - 0; Other Eukaryotes - 179 (source: NCBI BLink).  protein_id AT1G79790.1p  transcript_id AT1G79790.1  protein_id AT1G79790.1p  transcript_id AT1G79790.1  
At1g79800	chr1:030018549	0.0	W/30018549-30018753,30018844-30019217	AT1G79800.1  CDS  gene_syn F20B17.22, F20B17_22  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function copper ion binding|GO:0005507||ISS  product plastocyanin-like domain-containing protein  note plastocyanin-like domain-containing protein; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to membrane; EXPRESSED IN: sperm cell, leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: plastocyanin-like domain-containing protein (TAIR:AT1G48940.1); Has 740 Blast hits to 731 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 740; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G79800.1p  transcript_id AT1G79800.1  protein_id AT1G79800.1p  transcript_id AT1G79800.1  
At1g79810	chr1:030019944	0.0	W/30019944-30020033,30020106-30020219,30020293-30020452,30020529-30020665,30020766-30020866,30021082-30021199,30021660-30021826,30022042-30022156	AT1G79810.1  CDS  gene_syn F20B17.23, F20B17_23, PEX2, PEX2P, REVERSAL OF THE DET PHENOTYPE 3, TED3  gene TED3  function Dominant suppressor of det1 phenotypes. Encodes a peroxisomal protein essential for Arabidopsis growth. Inserted directly from the cytosol into peroxisomes.  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component peroxisome|GO:0005777|12130786|IDA  go_component peroxisome|GO:0005777|16169966|IDA  go_component endoplasmic reticulum|GO:0005783|16169966|IDA  go_component cytosol|GO:0005829|16169966|IDA  go_process fatty acid beta-oxidation|GO:0006635|17478547|IMP  go_process peroxisome organization|GO:0007031|12130786|IMP  go_process photomorphogenesis|GO:0009640|9093863|IMP  go_process protein import into peroxisome matrix|GO:0016558|17478547|IMP  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product TED3 (REVERSAL OF THE DET PHENOTYPE 3); protein binding / zinc ion binding  note REVERSAL OF THE DET PHENOTYPE 3 (TED3); FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: protein import into peroxisome matrix, fatty acid beta-oxidation, peroxisome organization, photomorphogenesis; LOCATED IN: cytosol, endoplasmic reticulum, peroxisome; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Pex, N-terminal (InterPro:IPR006845); Has 259 Blast hits to 256 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 86; Plants - 25; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT1G79810.1p  transcript_id AT1G79810.1  protein_id AT1G79810.1p  transcript_id AT1G79810.1  
At1g79810	chr1:030020169	0.0	W/30020169-30020219,30020293-30020452,30020529-30020665,30020766-30020866,30021082-30021199,30021660-30021826,30022042-30022156	AT1G79810.2  CDS  gene_syn F20B17.23, F20B17_23, PEX2, PEX2P, REVERSAL OF THE DET PHENOTYPE 3, TED3  gene TED3  function Dominant suppressor of det1 phenotypes. Encodes a peroxisomal protein essential for Arabidopsis growth. Inserted directly from the cytosol into peroxisomes.  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component peroxisome|GO:0005777|12130786|IDA  go_component peroxisome|GO:0005777|16169966|IDA  go_component endoplasmic reticulum|GO:0005783|16169966|IDA  go_component cytosol|GO:0005829|16169966|IDA  go_process fatty acid beta-oxidation|GO:0006635|17478547|IMP  go_process peroxisome organization|GO:0007031|12130786|IMP  go_process photomorphogenesis|GO:0009640|9093863|IMP  go_process protein import into peroxisome matrix|GO:0016558|17478547|IMP  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product TED3 (REVERSAL OF THE DET PHENOTYPE 3); protein binding / zinc ion binding  note REVERSAL OF THE DET PHENOTYPE 3 (TED3); FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: protein import into peroxisome matrix, fatty acid beta-oxidation, peroxisome organization, photomorphogenesis; LOCATED IN: cytosol, endoplasmic reticulum, peroxisome; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Pex, N-terminal (InterPro:IPR006845), Zinc finger, RING-type (InterPro:IPR001841); Has 256 Blast hits to 256 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 86; Plants - 25; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT1G79810.2p  transcript_id AT1G79810.2  protein_id AT1G79810.2p  transcript_id AT1G79810.2  
At1g79820	chr1:030026666	0.0	C/30026666-30026771,30026307-30026418,30025966-30026033,30025727-30025859,30025211-30025310,30024717-30024829,30024228-30024321,30023981-30024134,30023254-30023327,30023063-30023151,30022867-30022981,30022581-30022766	AT1G79820.3  CDS  gene_syn F20B17.24, F20B17_24, SGB1, SUPPRESSOR OF G PROTEIN BETA1  gene SGB1  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product SGB1 (SUPPRESSOR OF G PROTEIN BETA1); carbohydrate transmembrane transporter/ sugar:hydrogen symporter  note SUPPRESSOR OF G PROTEIN BETA1 (SGB1); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: hexose transporter, putative (TAIR:AT1G67300.1); Has 21376 Blast hits to 19991 proteins in 1284 species: Archae - 289; Bacteria - 9814; Metazoa - 3589; Fungi - 5038; Plants - 1401; Viruses - 0; Other Eukaryotes - 1245 (source: NCBI BLink).  protein_id AT1G79820.3p  transcript_id AT1G79820.3  protein_id AT1G79820.3p  transcript_id AT1G79820.3  
At1g79820	chr1:030026666	0.0	C/30026666-30026771,30026307-30026418,30025966-30026033,30025727-30025859,30025211-30025310,30024717-30024829,30024228-30024321,30023981-30024134,30023584-30023727,30023254-30023327,30023063-30023151,30022867-30022981,30022581-30022766	AT1G79820.1  CDS  gene_syn F20B17.24, F20B17_24, SGB1, SUPPRESSOR OF G PROTEIN BETA1  gene SGB1  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product SGB1 (SUPPRESSOR OF G PROTEIN BETA1); carbohydrate transmembrane transporter/ sugar:hydrogen symporter  note SUPPRESSOR OF G PROTEIN BETA1 (SGB1); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: hexose transporter, putative (TAIR:AT1G67300.1); Has 22135 Blast hits to 21769 proteins in 1316 species: Archae - 303; Bacteria - 10479; Metazoa - 4014; Fungi - 4474; Plants - 1524; Viruses - 2; Other Eukaryotes - 1339 (source: NCBI BLink).  protein_id AT1G79820.1p  transcript_id AT1G79820.1  protein_id AT1G79820.1p  transcript_id AT1G79820.1  
At1g79820	chr1:030026666	0.0	C/30026666-30026771,30026307-30026418,30025966-30026033,30025727-30025859,30025211-30025310,30024717-30024829,30024228-30024321,30023981-30024134,30023584-30023727,30023254-30023327,30023063-30023151,30022867-30022981,30022581-30022766	AT1G79820.2  CDS  gene_syn F20B17.24, F20B17_24, SGB1, SUPPRESSOR OF G PROTEIN BETA1  gene SGB1  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product SGB1 (SUPPRESSOR OF G PROTEIN BETA1); carbohydrate transmembrane transporter/ sugar:hydrogen symporter  note SUPPRESSOR OF G PROTEIN BETA1 (SGB1); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Sugar/inositol transporter (InterPro:IPR003663), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: hexose transporter, putative (TAIR:AT1G67300.1); Has 22135 Blast hits to 21769 proteins in 1316 species: Archae - 303; Bacteria - 10479; Metazoa - 4014; Fungi - 4474; Plants - 1524; Viruses - 2; Other Eukaryotes - 1339 (source: NCBI BLink).  protein_id AT1G79820.2p  transcript_id AT1G79820.2  protein_id AT1G79820.2p  transcript_id AT1G79820.2  
At1g79830	chr1:030033361	0.0	C/30033361-30033508,30031958-30032901,30031807-30031878,30031604-30031678,30031404-30031518,30031197-30031258,30031071-30031118,30030578-30030862,30030423-30030482,30030204-30030287,30030036-30030101,30029850-30029948,30029549-30029767,30029205-30029319,30028908-30029128,30028560-30028619,30028360-30028473,30028197-30028271,30028110-30028118	AT1G79830.1  CDS  gene_syn F19K16.21, F19K16_21, GC5, golgin candidate 5  gene GC5  function This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC5 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (139 aa) portion of the protein. The C-terminal portion of the protein can also specifically interact with two members of the Rab family of GTPases (RabH1b and RabH1c).  go_component nucleus|GO:0005634|14617066|IDA  go_component cytoplasm|GO:0005737|18182439|IDA  go_component Golgi apparatus|GO:0005794|18182439|IDA  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515|18182439|IPI  product GC5 (golgin candidate 5); protein binding  note golgin candidate 5 (GC5); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32240.1); Has 129214 Blast hits to 69391 proteins in 2350 species: Archae - 1269; Bacteria - 21454; Metazoa - 60717; Fungi - 9948; Plants - 5189; Viruses - 552; Other Eukaryotes - 30085 (source: NCBI BLink).  protein_id AT1G79830.1p  transcript_id AT1G79830.1  protein_id AT1G79830.1p  transcript_id AT1G79830.1  
At1g79830	chr1:030033361	0.0	C/30033361-30033508,30031958-30032901,30031807-30031878,30031604-30031678,30031404-30031518,30031197-30031258,30031071-30031118,30030578-30030862,30030423-30030482,30030204-30030287,30030036-30030101,30029850-30029948,30029549-30029767,30029205-30029319,30028908-30029128,30028560-30028619,30028360-30028473,30028197-30028271,30028110-30028118	AT1G79830.2  CDS  gene_syn F19K16.21, F19K16_21, GC5, golgin candidate 5  gene GC5  function This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC5 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (139 aa) portion of the protein. The C-terminal portion of the protein can also specifically interact with two members of the Rab family of GTPases (RabH1b and RabH1c).  go_component cytoplasm|GO:0005737|18182439|IDA  go_component Golgi apparatus|GO:0005794|18182439|IDA  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515|18182439|IPI  product GC5 (golgin candidate 5); protein binding  note golgin candidate 5 (GC5); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32240.1); Has 129214 Blast hits to 69391 proteins in 2350 species: Archae - 1269; Bacteria - 21454; Metazoa - 60717; Fungi - 9948; Plants - 5189; Viruses - 552; Other Eukaryotes - 30085 (source: NCBI BLink).  protein_id AT1G79830.2p  transcript_id AT1G79830.2  protein_id AT1G79830.2p  transcript_id AT1G79830.2  
At1g79840	chr1:030037526	0.0	W/30037526-30037603,30037706-30037980,30038617-30038734,30038818-30039354,30039444-30039548,30039643-30040033,30040117-30040388,30040473-30040559,30040633-30041013	AT1G79840.1  CDS  gene_syn F19K16.20, F19K16_20, GL2, GLABRA 2, HOMEOBOX PROTEIN GLABRA 2  gene GL2  function Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER.  go_component nucleus|GO:0005634|16581911|IDA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process epidermal cell fate specification|GO:0009957||IMP  go_process negative regulation of trichoblast fate specification|GO:0010062|8620852|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|7926739|ISS  product GL2 (GLABRA 2); DNA binding / transcription factor  note GLABRA 2 (GL2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: negative regulation of trichoblast fate specification, epidermal cell fate specification, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage, seed development stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ATML1 (MERISTEM LAYER 1); DNA binding / sequence-specific DNA binding / transcription factor (TAIR:AT4G21750.2); Has 10935 Blast hits to 10874 proteins in 566 species: Archae - 0; Bacteria - 8; Metazoa - 8847; Fungi - 254; Plants - 1569; Viruses - 4; Other Eukaryotes - 253 (source: NCBI BLink).  protein_id AT1G79840.1p  transcript_id AT1G79840.1  protein_id AT1G79840.1p  transcript_id AT1G79840.1  
At1g79850	chr1:030041473	0.0	C/30041473-30041922	AT1G79850.1  CDS  gene_syn CS17, F19K16.19, F19K16_19, PLASTID RIBOSOMAL SMALL SUBUNIT PROTEIN 17, PRPS17, RIBOSOMAL PROTEIN S17, RPS17  gene RPS17  function nuclear-encoded 30S chloroplast ribosomal protein S17  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component plastid small ribosomal subunit|GO:0000312|2406240|ISS  go_component cytosolic small ribosomal subunit|GO:0022627||ISS  go_process translation|GO:0006412||ISS  go_process translation|GO:0006412||TAS  go_function structural constituent of ribosome|GO:0003735||ISS  product RPS17 (RIBOSOMAL PROTEIN S17); structural constituent of ribosome  note RIBOSOMAL PROTEIN S17 (RPS17); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, plastid small ribosomal subunit, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S17 (InterPro:IPR000266); Has 4907 Blast hits to 4907 proteins in 1452 species: Archae - 87; Bacteria - 2923; Metazoa - 1; Fungi - 44; Plants - 64; Viruses - 0; Other Eukaryotes - 1788 (source: NCBI BLink).  protein_id AT1G79850.1p  transcript_id AT1G79850.1  protein_id AT1G79850.1p  transcript_id AT1G79850.1  
At1g79860	chr1:030043702	0.0	C/30043702-30044092,30043464-30043618,30043304-30043378,30042934-30043197,30042172-30042834	AT1G79860.1  CDS  gene_syn ATROPGEF12, F19K16.18, F19K16_18, KINASE PARTNER PROTEIN-LIKE, KPP-LIKE, MATERNAL EFFECT EMBRYO ARREST 64, MEE64, RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 12, ROPGEF12  gene ROPGEF12  function Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily. Coexpression of AtPRK2a with AtRopGEF12 resulted in isotropic pollen tube growth Growth.  go_component plasma membrane|GO:0005886|18000057|IDA  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process pollen tube growth|GO:0009860|18000057|IEP  go_function Rho guanyl-nucleotide exchange factor activity|GO:0005089|15980860|ISS  product ROPGEF12 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 12); Rho guanyl-nucleotide exchange factor  note RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 12 (ROPGEF12); FUNCTIONS IN: Rho guanyl-nucleotide exchange factor activity; INVOLVED IN: embryonic development ending in seed dormancy, pollen tube growth; LOCATED IN: plasma membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: ROPGEF11 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 11); Rho guanyl-nucleotide exchange factor (TAIR:AT1G52240.1); Has 174 Blast hits to 173 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 174; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G79860.1p  transcript_id AT1G79860.1  protein_id AT1G79860.1p  transcript_id AT1G79860.1  
At1g79870	chr1:030044794	0.0	W/30044794-30045216,30045333-30045851	AT1G79870.1  CDS  gene_syn F19K16.17, F19K16_17  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_function cofactor binding|GO:0048037||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product oxidoreductase family protein  note oxidoreductase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: oxidoreductase family protein (TAIR:AT1G12550.1); Has 19936 Blast hits to 19933 proteins in 1515 species: Archae - 283; Bacteria - 9447; Metazoa - 662; Fungi - 752; Plants - 323; Viruses - 5; Other Eukaryotes - 8464 (source: NCBI BLink).  protein_id AT1G79870.1p  transcript_id AT1G79870.1  protein_id AT1G79870.1p  transcript_id AT1G79870.1  
At1g79880	chr1:030047900	0.0	C/30047900-30048014,30047678-30047820,30047462-30047610,30047279-30047344,30047117-30047187,30046831-30047039,30046603-30046747,30046420-30046510,30046222-30046306	AT1G79880.3  CDS  gene_syn F19K16.16, F19K16_16  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  product La domain-containing protein  note La domain-containing protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA binding motif (InterPro:IPR014886); BEST Arabidopsis thaliana protein match is: AtLa1 (Arabidopsis thaliana La protein 1); RNA binding (TAIR:AT4G32720.2); Has 131 Blast hits to 131 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 25; Plants - 41; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G79880.3p  transcript_id AT1G79880.3  protein_id AT1G79880.3p  transcript_id AT1G79880.3  
At1g79880	chr1:030047900	0.0	C/30047900-30048014,30047678-30047820,30047462-30047610,30047279-30047344,30047117-30047187,30046831-30047039,30046603-30046747,30046456-30046510,30046222-30046306	AT1G79880.2  CDS  gene_syn F19K16.16, F19K16_16  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  product La domain-containing protein  note La domain-containing protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA binding motif (InterPro:IPR014886); BEST Arabidopsis thaliana protein match is: AtLa1 (Arabidopsis thaliana La protein 1); RNA binding (TAIR:AT4G32720.2); Has 134 Blast hits to 134 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 52; Fungi - 25; Plants - 41; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G79880.2p  transcript_id AT1G79880.2  protein_id AT1G79880.2p  transcript_id AT1G79880.2  
At1g79880	chr1:030048289	0.0	C/30048289-30048336,30048125-30048203,30047900-30048049,30047678-30047820,30047462-30047610,30047279-30047344,30047117-30047187,30046831-30047039,30046603-30046747,30046456-30046510,30046222-30046306	AT1G79880.1  CDS  gene_syn F19K16.16, F19K16_16  go_component nucleus|GO:0005634||IEA  go_component ribonucleoprotein complex|GO:0030529||IEA  go_process RNA processing|GO:0006396||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  product La domain-containing protein  note La domain-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: ribonucleoprotein complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Lupus La protein (InterPro:IPR002344), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA binding motif (InterPro:IPR014886); BEST Arabidopsis thaliana protein match is: AtLa1 (Arabidopsis thaliana La protein 1); RNA binding (TAIR:AT4G32720.2); Has 596 Blast hits to 596 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 344; Fungi - 98; Plants - 98; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT1G79880.1p  transcript_id AT1G79880.1  protein_id AT1G79880.1p  transcript_id AT1G79880.1  
At1g79890	chr1:030048655	0.0	W/30048655-30048778,30048885-30049439,30049516-30049604,30049809-30050162,30050286-30050588,30050686-30050916,30050990-30051211,30051329-30051866,30051971-30052203	AT1G79890.1  CDS  gene_syn F19K16.15, F19K16_15  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function ATP-dependent DNA helicase activity|GO:0004003||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides|GO:0016818||IEA  product helicase-related  note helicase-related; FUNCTIONS IN: in 6 functions; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD2 (InterPro:IPR010614), DEAD-like helicase, N-terminal (InterPro:IPR014001), Helicase, superfamily 1 and 2, ATP-binding, DinG/Rad3-type (InterPro:IPR014013), DNA helicase (DNA repair), Rad3 type (InterPro:IPR013020), Helicase, ATP-dependent, c2 type (InterPro:IPR006555); BEST Arabidopsis thaliana protein match is: helicase-related (TAIR:AT1G79950.1); Has 1765 Blast hits to 1273 proteins in 261 species: Archae - 114; Bacteria - 78; Metazoa - 675; Fungi - 259; Plants - 117; Viruses - 1; Other Eukaryotes - 521 (source: NCBI BLink).  protein_id AT1G79890.1p  transcript_id AT1G79890.1  protein_id AT1G79890.1p  transcript_id AT1G79890.1  
At1g79900	chr1:030053363	0.0	C/30053363-30053599,30052524-30053177	AT1G79900.1  CDS  gene_syn ATMBAC2, BAC2, F19K16.14, F19K16_14, RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2  gene BAC2  function encodes a mitochondrial ornithine transporter that exports ornithine from the mitochondria to the cytosol  go_component mitochondrial inner membrane|GO:0005743||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function L-ornithine transmembrane transporter activity|GO:0000064|12517306|IGI  go_function carnitine:acyl carnitine antiporter activity|GO:0005476||ISS  go_function binding|GO:0005488||ISS  product BAC2; L-ornithine transmembrane transporter/ binding / carnitine:acyl carnitine antiporter  note BAC2; FUNCTIONS IN: L-ornithine transmembrane transporter activity, carnitine:acyl carnitine antiporter activity, binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: BOU (A BOUT DE SOUFFLE); binding / transporter (TAIR:AT5G46800.1); Has 18596 Blast hits to 10092 proteins in 354 species: Archae - 0; Bacteria - 0; Metazoa - 9340; Fungi - 4881; Plants - 2548; Viruses - 6; Other Eukaryotes - 1821 (source: NCBI BLink).  protein_id AT1G79900.1p  transcript_id AT1G79900.1  protein_id AT1G79900.1p  transcript_id AT1G79900.1  
At1g79910	chr1:030055050	0.0	W/30055050-30055090,30055158-30055290,30055730-30055833,30055915-30056059,30056136-30056282,30056358-30056664,30056743-30057011	AT1G79910.1  CDS  gene_syn F19K16.13, F19K16_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52315.1); Has 373 Blast hits to 373 proteins in 115 species: Archae - 0; Bacteria - 1; Metazoa - 131; Fungi - 68; Plants - 144; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G79910.1p  transcript_id AT1G79910.1  protein_id AT1G79910.1p  transcript_id AT1G79910.1  
At1g79910	chr1:030055088	0.0	W/30055088-30055090,30055158-30055290,30055734-30055833,30055915-30056059,30056136-30056282,30056358-30056664,30056743-30057011	AT1G79910.2  CDS  gene_syn F19K16.13, F19K16_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52315.1); Has 338 Blast hits to 338 proteins in 100 species: Archae - 0; Bacteria - 1; Metazoa - 116; Fungi - 54; Plants - 143; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT1G79910.2p  transcript_id AT1G79910.2  protein_id AT1G79910.2p  transcript_id AT1G79910.2  
At1g79915	chr1:030057220	0.0	W/30057220-30057385,30057463-30057530,30057606-30057708,30057827-30057877,30057954-30058085,30058167-30058330,30058403-30058657	AT1G79915.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 53 Blast hits to 53 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G79915.1p  transcript_id AT1G79915.1  protein_id AT1G79915.1p  transcript_id AT1G79915.1  
At1g79920	chr1:030061055	0.0	C/30061055-30062224,30060702-30060929,30060529-30060624,30060162-30060384,30059886-30060076,30059655-30059800,30059410-30059559,30059178-30059308,30058935-30059094	AT1G79920.2  CDS  gene_syn F19K16.12, F19K16_12  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function ATP binding|GO:0005524||IEA  product ATP binding  note ATP binding; FUNCTIONS IN: ATP binding; LOCATED IN: cell wall, plasma membrane; EXPRESSED IN: male gametophyte, guard cell, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: HSP91; ATP binding (TAIR:AT1G79930.1); Has 18225 Blast hits to 18166 proteins in 2753 species: Archae - 99; Bacteria - 6884; Metazoa - 2786; Fungi - 1011; Plants - 610; Viruses - 86; Other Eukaryotes - 6749 (source: NCBI BLink).  protein_id AT1G79920.2p  transcript_id AT1G79920.2  protein_id AT1G79920.2p  transcript_id AT1G79920.2  
At1g79920	chr1:030061055	0.0	C/30061055-30062224,30060702-30060929,30060529-30060624,30060166-30060384,30059886-30060080,30059655-30059800,30059410-30059559,30059178-30059308,30058935-30059094	AT1G79920.1  CDS  gene_syn F19K16.12, F19K16_12  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function ATP binding|GO:0005524||IEA  product ATP binding  note ATP binding; FUNCTIONS IN: ATP binding; LOCATED IN: cell wall, plasma membrane; EXPRESSED IN: male gametophyte, guard cell, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: HSP91; ATP binding (TAIR:AT1G79930.1); Has 18240 Blast hits to 18180 proteins in 2754 species: Archae - 99; Bacteria - 6882; Metazoa - 2791; Fungi - 1011; Plants - 610; Viruses - 86; Other Eukaryotes - 6761 (source: NCBI BLink).  protein_id AT1G79920.1p  transcript_id AT1G79920.1  protein_id AT1G79920.1p  transcript_id AT1G79920.1  
At1g79930	chr1:030065898	0.0	C/30065898-30067067,30065545-30065772,30065371-30065466,30065010-30065228,30064731-30064925,30064500-30064646,30064255-30064404,30064027-30064157,30063781-30063940	AT1G79930.1  CDS  gene_syn F19K16.11, F19K16_11, HEAT SHOCK PROTEIN 91, HSP91  gene HSP91  function encodes high molecular weight heat shock protein 70 not a HSP90 homolog, mRNA is constitutively expressed but transiently induced after heat shock  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component nucleus|GO:0005634|8706819|ISS  go_process protein folding|GO:0006457||ISS  go_process response to heat|GO:0009408|8706819|IEP  go_function ATP binding|GO:0005524|8706819|ISS  product HSP91; ATP binding  note HSP91; FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to cadmium ion, response to heat; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: ATP binding (TAIR:AT1G79920.1); Has 19203 Blast hits to 18627 proteins in 2769 species: Archae - 99; Bacteria - 6809; Metazoa - 3216; Fungi - 1104; Plants - 659; Viruses - 87; Other Eukaryotes - 7229 (source: NCBI BLink).  protein_id AT1G79930.1p  transcript_id AT1G79930.1  protein_id AT1G79930.1p  transcript_id AT1G79930.1  
At1g79930	chr1:030065898	0.0	C/30065898-30067067,30065545-30065772,30065371-30065466,30065010-30065228,30064731-30064925,30064500-30064646,30064255-30064404,30064027-30064157,30063924-30063957	AT1G79930.2  CDS  gene_syn F19K16.11, F19K16_11, HEAT SHOCK PROTEIN 91, HSP91  gene HSP91  function encodes high molecular weight heat shock protein 70 not a HSP90 homolog, mRNA is constitutively expressed but transiently induced after heat shock  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component nucleus|GO:0005634|8706819|ISS  go_process protein folding|GO:0006457||ISS  go_process response to heat|GO:0009408|8706819|IEP  go_function ATP binding|GO:0005524|8706819|ISS  product HSP91; ATP binding  note HSP91; FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to cadmium ion, response to heat; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: ATP binding (TAIR:AT1G79920.1); Has 18929 Blast hits to 18427 proteins in 2761 species: Archae - 99; Bacteria - 6773; Metazoa - 3086; Fungi - 1067; Plants - 659; Viruses - 87; Other Eukaryotes - 7158 (source: NCBI BLink).  protein_id AT1G79930.2p  transcript_id AT1G79930.2  protein_id AT1G79930.2p  transcript_id AT1G79930.2  
At1g79940	chr1:030070023	0.0	W/30070023-30070208,30070287-30070382,30070473-30070593,30070708-30070814,30070901-30071118,30071227-30071404,30071482-30071601,30071824-30071910,30072071-30072181,30072398-30073237	AT1G79940.1  CDS  gene_syn ATERDJ2A, F19K16.10, F19K16_10  gene ATERDJ2A  function J domain protein localized in ER membrane. Mutants have defective pollen germination.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component integral to endoplasmic reticulum membrane|GO:0030176|18718935|IDA  go_process protein folding|GO:0006457||ISS  product ATERDJ2A; heat shock protein binding / unfolded protein binding  note ATERDJ2A; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: integral to endoplasmic reticulum membrane, mitochondrion, endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: ATERDJ2B; heat shock protein binding / unfolded protein binding (TAIR:AT4G21180.1); Has 20995 Blast hits to 16443 proteins in 1930 species: Archae - 98; Bacteria - 5060; Metazoa - 7871; Fungi - 1610; Plants - 1133; Viruses - 143; Other Eukaryotes - 5080 (source: NCBI BLink).  protein_id AT1G79940.1p  transcript_id AT1G79940.1  protein_id AT1G79940.1p  transcript_id AT1G79940.1  
At1g79940	chr1:030070023	0.0	W/30070023-30070208,30070287-30070382,30070473-30070593,30070708-30070814,30070901-30071118,30071227-30071404,30071482-30071601,30071824-30071910,30072071-30072181,30072398-30073237	AT1G79940.2  CDS  gene_syn ATERDJ2A, F19K16.10, F19K16_10  gene ATERDJ2A  function J domain protein localized in ER membrane. Mutants have defective pollen germination.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component integral to endoplasmic reticulum membrane|GO:0030176|18718935|IDA  go_process protein folding|GO:0006457||ISS  product ATERDJ2A; heat shock protein binding / unfolded protein binding  note ATERDJ2A; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: integral to endoplasmic reticulum membrane, mitochondrion, endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: ATERDJ2B; heat shock protein binding / unfolded protein binding (TAIR:AT4G21180.1); Has 20995 Blast hits to 16443 proteins in 1930 species: Archae - 98; Bacteria - 5060; Metazoa - 7871; Fungi - 1610; Plants - 1133; Viruses - 143; Other Eukaryotes - 5080 (source: NCBI BLink).  protein_id AT1G79940.2p  transcript_id AT1G79940.2  protein_id AT1G79940.2p  transcript_id AT1G79940.2  
At1g79940	chr1:030070023	0.0	W/30070023-30070208,30070287-30070382,30070473-30070593,30070708-30070814,30070901-30071118,30071227-30071404,30071482-30071601,30071824-30071910,30072071-30072181,30072398-30073237	AT1G79940.3  CDS  gene_syn ATERDJ2A, F19K16.10, F19K16_10  gene ATERDJ2A  function J domain protein localized in ER membrane. Mutants have defective pollen germination.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component integral to endoplasmic reticulum membrane|GO:0030176|18718935|IDA  go_process protein folding|GO:0006457||ISS  product ATERDJ2A; heat shock protein binding / unfolded protein binding  note ATERDJ2A; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: integral to endoplasmic reticulum membrane, mitochondrion, endoplasmic reticulum, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: ATERDJ2B; heat shock protein binding / unfolded protein binding (TAIR:AT4G21180.1); Has 20995 Blast hits to 16443 proteins in 1930 species: Archae - 98; Bacteria - 5060; Metazoa - 7871; Fungi - 1610; Plants - 1133; Viruses - 143; Other Eukaryotes - 5080 (source: NCBI BLink).  protein_id AT1G79940.3p  transcript_id AT1G79940.3  protein_id AT1G79940.3p  transcript_id AT1G79940.3  
At1g79950	chr1:030073580	0.0	W/30073580-30073816,30074066-30074331,30074405-30074553,30074644-30074725,30074821-30074968,30075130-30075286,30075372-30075655,30075764-30075809,30076009-30076150,30076245-30076399,30076559-30076650,30076734-30076832,30076911-30076979,30077120-30077206,30077425-30077478,30077542-30077672,30077995-30078052,30078128-30078233,30078555-30078608,30078740-30079203,30079295-30079537	AT1G79950.1  CDS  gene_syn F18B13.3, F18B13_3  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function ATP-dependent DNA helicase activity|GO:0004003||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides|GO:0016818||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  product helicase-related  note helicase-related; FUNCTIONS IN: in 6 functions; INVOLVED IN: regulation of transcription, DNA-dependent, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD2 (InterPro:IPR010614), Helicase, superfamily 1 and 2, ATP-binding, DinG/Rad3-type (InterPro:IPR014013), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA helicase (DNA repair), Rad3 type (InterPro:IPR013020), Helicase-like, DEXD box c2 type (InterPro:IPR006554), Helicase, ATP-dependent, c2 type (InterPro:IPR006555), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding (TAIR:AT1G20720.1); Has 2029 Blast hits to 1683 proteins in 468 species: Archae - 131; Bacteria - 467; Metazoa - 599; Fungi - 288; Plants - 90; Viruses - 2; Other Eukaryotes - 452 (source: NCBI BLink).  protein_id AT1G79950.1p  transcript_id AT1G79950.1  protein_id AT1G79950.1p  transcript_id AT1G79950.1  
At1g79960	chr1:030079665	0.0	C/30079665-30080549	AT1G79960.1  CDS  gene_syn ATOFP14, F18B13.4, F18B13_4, OFP14, OVATE FAMILY PROTEIN 14  gene OFP14  go_process biological_process|GO:0008150||ND  product OFP14 (OVATE FAMILY PROTEIN 14)  note OVATE FAMILY PROTEIN 14 (OFP14); INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623, plant (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16) (TAIR:AT2G32100.1); Has 245 Blast hits to 245 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 23; Plants - 193; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT1G79960.1p  transcript_id AT1G79960.1  protein_id AT1G79960.1p  transcript_id AT1G79960.1  
At1g79970	chr1:030082773	0.0	W/30082773-30083395,30083493-30083592	AT1G79970.1  CDS  gene_syn F18B13.5, F18B13_5  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: senescence-associated protein-related (TAIR:AT2G25690.2); Has 74 Blast hits to 74 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G79970.1p  transcript_id AT1G79970.1  protein_id AT1G79970.1p  transcript_id AT1G79970.1  
At1g79970	chr1:030082773	0.0	W/30082773-30083429	AT1G79970.2  CDS  gene_syn F18B13.5, F18B13_5  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: senescence-associated protein-related (TAIR:AT2G25690.2); Has 74 Blast hits to 74 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G79970.2p  transcript_id AT1G79970.2  protein_id AT1G79970.2p  transcript_id AT1G79970.2  
At1g79980	chr1:030083996	0.0	C/30083996-30084069	AT1G79980.1  tRNA  gene_syn 51605.TRNA-ARG-1, 60024.TRNA-ARG-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: TCG)  transcript_id AT1G79980.1  
At1g79990	chr1:030084522	0.0	W/30084522-30084745,30084842-30085068,30085187-30085194	AT1G79990.2  CDS  gene_syn F19K16.4, F19K16_4  go_component Golgi membrane|GO:0000139||IEA  go_component endomembrane system|GO:0012505||IEA  go_component COPI vesicle coat|GO:0030126||ISS  product unknown protein  note LOCATED IN: endomembrane system, COPI vesicle coat, Golgi membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SYS1 homologue (InterPro:IPR016973); Has 55556 Blast hits to 24059 proteins in 620 species: Archae - 38; Bacteria - 5697; Metazoa - 25539; Fungi - 10898; Plants - 5309; Viruses - 0; Other Eukaryotes - 8075 (source: NCBI BLink).  protein_id AT1G79990.2p  transcript_id AT1G79990.2  protein_id AT1G79990.2p  transcript_id AT1G79990.2  
At1g79990	chr1:030084522	0.0	W/30084522-30084745,30084842-30085068,30085187-30085194	AT1G79990.4  CDS  gene_syn F19K16.4, F19K16_4  go_component Golgi membrane|GO:0000139||IEA  go_component endomembrane system|GO:0012505||IEA  go_component COPI vesicle coat|GO:0030126||ISS  product unknown protein  note LOCATED IN: endomembrane system, COPI vesicle coat, Golgi membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SYS1 homologue (InterPro:IPR016973).  protein_id AT1G79990.4p  transcript_id AT1G79990.4  protein_id AT1G79990.4p  transcript_id AT1G79990.4  
At1g79990	chr1:030084522	0.0	W/30084522-30084745,30084842-30085068,30085754-30085912,30086000-30086037,30086189-30086209,30086295-30086356,30086433-30086487,30086593-30086629,30086709-30087034,30087144-30087275,30087418-30087566,30087680-30087748,30087885-30088032,30088127-30088192,30088476-30088664,30088788-30088928,30089115-30089189,30089314-30089490,30089580-30089671,30089751-30089867,30090025-30090139,30090224-30090295,30090399-30090595,30090678-30090771,30090873-30090979,30091220-30091349,30091483-30091648,30091927-30091949	AT1G79990.1  CDS  gene_syn F19K16.4, F19K16_4  go_component endomembrane system|GO:0012505||IEA  go_component membrane coat|GO:0030117||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function structural molecule activity|GO:0005198||IEA  go_function protein binding|GO:0005515||IEA  go_component COPI vesicle coat|GO:0030126||ISS  product protein binding / structural molecule  note protein binding / structural molecule; FUNCTIONS IN: protein binding, structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, endomembrane system, COPI vesicle coat; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Coatomer, WD associated region (InterPro:IPR006692), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: coatomer protein complex, subunit beta 2 (beta prime), putative (TAIR:AT1G52360.1); Has 55918 Blast hits to 24188 proteins in 622 species: Archae - 40; Bacteria - 5752; Metazoa - 25846; Fungi - 10921; Plants - 5304; Viruses - 8; Other Eukaryotes - 8047 (source: NCBI BLink).  protein_id AT1G79990.1p  transcript_id AT1G79990.1  protein_id AT1G79990.1p  transcript_id AT1G79990.1  
At1g79990	chr1:030085910	0.0	W/30085910-30085912,30086189-30086209,30086295-30086356,30086433-30086487,30086593-30086629,30086709-30087034,30087144-30087275,30087418-30087566,30087680-30087748,30087885-30088032,30088127-30088192,30088476-30088664,30088788-30088928,30089115-30089189,30089314-30089490,30089580-30089671,30089751-30089867,30090025-30090139,30090224-30090295,30090399-30090595,30090678-30090771,30090873-30090979,30091220-30091349,30091483-30091624,30091927-30091949	AT1G79990.5  CDS  gene_syn F19K16.4, F19K16_4  go_component membrane coat|GO:0030117||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function structural molecule activity|GO:0005198||IEA  go_function protein binding|GO:0005515||IEA  go_component COPI vesicle coat|GO:0030126||ISS  product protein binding / structural molecule  note protein binding / structural molecule; FUNCTIONS IN: protein binding, structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Coatomer, WD associated region (InterPro:IPR006692), Coatomer, beta&apos; subunit (InterPro:IPR016453), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: coatomer protein complex, subunit beta 2 (beta prime), putative (TAIR:AT1G52360.1).  protein_id AT1G79990.5p  transcript_id AT1G79990.5  protein_id AT1G79990.5p  transcript_id AT1G79990.5  
At1g79990	chr1:030085910	0.0	W/30085910-30085912,30086189-30086209,30086295-30086356,30086433-30086487,30086593-30086629,30086709-30087034,30087144-30087275,30087418-30087566,30087680-30087748,30087885-30088032,30088127-30088192,30088476-30088664,30088788-30088928,30089115-30089189,30089314-30089490,30089580-30089671,30089751-30089867,30090025-30090139,30090224-30090295,30090399-30090595,30090678-30090771,30090873-30090979,30091220-30091349,30091483-30091648,30091927-30091949	AT1G79990.3  CDS  gene_syn F19K16.4, F19K16_4  go_component membrane coat|GO:0030117||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function structural molecule activity|GO:0005198||IEA  go_function protein binding|GO:0005515||IEA  go_component COPI vesicle coat|GO:0030126||ISS  product protein binding / structural molecule  note protein binding / structural molecule; FUNCTIONS IN: protein binding, structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Coatomer, WD associated region (InterPro:IPR006692), Coatomer, beta  subunit (InterPro:IPR016453), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: coatomer protein complex, subunit beta 2 (beta prime), putative (TAIR:AT1G52360.1).  protein_id AT1G79990.3p  transcript_id AT1G79990.3  protein_id AT1G79990.3p  transcript_id AT1G79990.3  
At1g80000	chr1:030093195	0.0	W/30093195-30093661,30093973-30094072,30094238-30094443,30094529-30095208,30095432-30095534,30095773-30095892,30096293-30096345,30096477-30096537,30096715-30096742	AT1G80000.1  CDS  gene_syn F19K16.3, F19K16_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CASC3/Barentsz eIF4AIII binding (InterPro:IPR018545); BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT1G15280.2); Has 2243 Blast hits to 1704 proteins in 212 species: Archae - 16; Bacteria - 151; Metazoa - 691; Fungi - 281; Plants - 163; Viruses - 64; Other Eukaryotes - 877 (source: NCBI BLink).  protein_id AT1G80000.1p  transcript_id AT1G80000.1  protein_id AT1G80000.1p  transcript_id AT1G80000.1  
At1g80000	chr1:030093195	0.0	W/30093195-30093661,30093973-30094072,30094238-30094443,30094529-30095208,30095432-30095534,30095773-30095892,30096293-30096345,30096477-30096537,30096715-30096742	AT1G80000.2  CDS  gene_syn F19K16.3, F19K16_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CASC3/Barentsz eIF4AIII binding (InterPro:IPR018545); BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT1G15280.2); Has 2243 Blast hits to 1704 proteins in 212 species: Archae - 16; Bacteria - 151; Metazoa - 691; Fungi - 281; Plants - 163; Viruses - 64; Other Eukaryotes - 877 (source: NCBI BLink).  protein_id AT1G80000.2p  transcript_id AT1G80000.2  protein_id AT1G80000.2p  transcript_id AT1G80000.2  
At1g80010	chr1:030097565	0.0	W/30097565-30097651,30097756-30099846	AT1G80010.1  CDS  gene_syn F18B13.10, F18B13_10, FAR1-related sequence 8, FRS8  gene FRS8  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process response to red or far red light|GO:0009639||ISS  product FRS8 (FAR1-related sequence 8); zinc ion binding  note FAR1-related sequence 8 (FRS8); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FRS6 (FAR1-related sequence 6); zinc ion binding (TAIR:AT1G52520.1); Has 838 Blast hits to 755 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 86; Plants - 751; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G80010.1p  transcript_id AT1G80010.1  protein_id AT1G80010.1p  transcript_id AT1G80010.1  
At1g80020	chr1:030100473	0.0	C/30100473-30103899	AT1G80020.1  mRNA_TE_gene  pseudo  gene_syn F19K16.1, F19K16_1  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 5.0e-62 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At1g80030	chr1:030108571	0.0	C/30108571-30108873,30108141-30108209,30107861-30107953,30107546-30107667,30107020-30107215,30106570-30106745,30106331-30106460,30106063-30106223,30105864-30105958,30105594-30105705,30105398-30105443	AT1G80030.1  CDS  gene_syn F18B13.12, F18B13_12  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process protein folding|GO:0006457||IEA  go_process response to heat|GO:0009408||IEA  go_function ATP binding|GO:0005524||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock protein, putative  note DNAJ heat shock protein, putative; FUNCTIONS IN: unfolded protein binding, heat shock protein binding, ATP binding; INVOLVED IN: protein folding, response to heat; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), Heat shock protein DnaJ, cysteine-rich region (InterPro:IPR001305), Chaperone DnaJ (InterPro:IPR012724), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT3G17830.1); Has 20943 Blast hits to 20164 proteins in 2101 species: Archae - 124; Bacteria - 6520; Metazoa - 3750; Fungi - 1621; Plants - 1440; Viruses - 18; Other Eukaryotes - 7470 (source: NCBI BLink).  protein_id AT1G80030.1p  transcript_id AT1G80030.1  protein_id AT1G80030.1p  transcript_id AT1G80030.1  
At1g80030	chr1:030108571	0.0	C/30108571-30108873,30108141-30108209,30107861-30107953,30107546-30107667,30107020-30107215,30106570-30106745,30106331-30106460,30106063-30106223,30105864-30105958,30105594-30105705,30105398-30105443	AT1G80030.2  CDS  gene_syn F18B13.12, F18B13_12  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process protein folding|GO:0006457||IEA  go_process response to heat|GO:0009408||IEA  go_function ATP binding|GO:0005524||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock protein, putative  note DNAJ heat shock protein, putative; FUNCTIONS IN: unfolded protein binding, heat shock protein binding, ATP binding; INVOLVED IN: protein folding, response to heat; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), Heat shock protein DnaJ, cysteine-rich region (InterPro:IPR001305), Chaperone DnaJ (InterPro:IPR012724), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT3G17830.1); Has 20943 Blast hits to 20164 proteins in 2101 species: Archae - 124; Bacteria - 6520; Metazoa - 3750; Fungi - 1621; Plants - 1440; Viruses - 18; Other Eukaryotes - 7470 (source: NCBI BLink).  protein_id AT1G80030.2p  transcript_id AT1G80030.2  protein_id AT1G80030.2p  transcript_id AT1G80030.2  
At1g80030	chr1:030108571	0.0	C/30108571-30108873,30108141-30108209,30107861-30107953,30107546-30107667,30107020-30107215,30106570-30106745,30106331-30106460,30106063-30106223,30105864-30105958,30105594-30105705,30105398-30105443	AT1G80030.3  CDS  gene_syn F18B13.12, F18B13_12  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process protein folding|GO:0006457||IEA  go_process response to heat|GO:0009408||IEA  go_function ATP binding|GO:0005524||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock protein, putative  note DNAJ heat shock protein, putative; FUNCTIONS IN: unfolded protein binding, heat shock protein binding, ATP binding; INVOLVED IN: protein folding, response to heat; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), Heat shock protein DnaJ, cysteine-rich region (InterPro:IPR001305), Chaperone DnaJ (InterPro:IPR012724), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT3G17830.1); Has 20943 Blast hits to 20164 proteins in 2101 species: Archae - 124; Bacteria - 6520; Metazoa - 3750; Fungi - 1621; Plants - 1440; Viruses - 18; Other Eukaryotes - 7470 (source: NCBI BLink).  protein_id AT1G80030.3p  transcript_id AT1G80030.3  protein_id AT1G80030.3p  transcript_id AT1G80030.3  
At1g80040	chr1:030110881	0.0	C/30110881-30111051,30110307-30110621,30109693-30109866,30109447-30109533	AT1G80040.1  CDS  gene_syn F18B13.13, F18B13_13  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G32440.1); Has 96 Blast hits to 96 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G80040.1p  transcript_id AT1G80040.1  protein_id AT1G80040.1p  transcript_id AT1G80040.1  
At1g80040	chr1:030110881	0.0	C/30110881-30111051,30110307-30110621,30110059-30110115	AT1G80040.2  CDS  gene_syn F18B13.13, F18B13_13  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G32440.1); Has 84 Blast hits to 84 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G80040.2p  transcript_id AT1G80040.2  protein_id AT1G80040.2p  transcript_id AT1G80040.2  
At1g80050	chr1:030113171	0.0	C/30113171-30113261,30112981-30113091,30112385-30112477,30112127-30112276,30111922-30111980,30111708-30111782	AT1G80050.1  CDS  gene_syn ADENINE PHOSPHORIBOSYL TRANSFERASE 2, APT2, ATAPT2, F18B13.14, F18B13_14  gene APT2  function Encodes an adenosine phosphoribosyl transferase(E.C:2.4.2.7), a constitutively expressed enzyme involved in the one-step salvage of adenine to AMP. This isozyme has high affinity for cytokinins and is likely to be localized to the cytosol.  go_component plasma membrane|GO:0005886|15060130|IDA  go_component cytosol|GO:0005829|12010467|ISS  go_process adenine salvage|GO:0006168|12010467|TAS  go_function adenine phosphoribosyltransferase activity|GO:0003999|8696367|IDA  go_function adenine phosphoribosyltransferase activity|GO:0003999||ISS  go_function phosphate transmembrane transporter activity|GO:0015114|9025304|ISS  product APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2); adenine phosphoribosyltransferase/ phosphate transmembrane transporter  note ADENINE PHOSPHORIBOSYL TRANSFERASE 2 (APT2); FUNCTIONS IN: phosphate transmembrane transporter activity, adenine phosphoribosyltransferase activity; INVOLVED IN: adenine salvage; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adenine phosphoribosyl transferase (InterPro:IPR005764), Phosphoribosyltransferase (InterPro:IPR000836); BEST Arabidopsis thaliana protein match is: APT5 (Adenine phosphoribosyltransferase 5); adenine phosphoribosyltransferase (TAIR:AT5G11160.1); Has 5450 Blast hits to 5450 proteins in 1377 species: Archae - 132; Bacteria - 2941; Metazoa - 144; Fungi - 124; Plants - 101; Viruses - 0; Other Eukaryotes - 2008 (source: NCBI BLink).  protein_id AT1G80050.1p  transcript_id AT1G80050.1  protein_id AT1G80050.1p  transcript_id AT1G80050.1  
At1g80060	chr1:030117329	0.0	C/30117329-30117524,30116983-30117082,30116805-30116904,30116629-30116711,30116302-30116554	AT1G80060.1  CDS  gene_syn F18B13.35, F18B13_35  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32270.1); Has 97 Blast hits to 97 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 56; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G80060.1p  transcript_id AT1G80060.1  protein_id AT1G80060.1p  transcript_id AT1G80060.1  
At1g80070	chr1:030118052	0.0	W/30118052-30118404,30118471-30118594,30118668-30118760,30118852-30119242,30119328-30119808,30119905-30120695,30120778-30121046,30121143-30121457,30121553-30121857,30121943-30122397,30122492-30122618,30122733-30122974,30123067-30123190,30123285-30123582,30123824-30124077,30124217-30124833,30124922-30125028,30125114-30125368,30125497-30125970,30126151-30126312,30126428-30126625,30126705-30126983,30127053-30127295,30127383-30127574	AT1G80070.1  CDS  gene_syn ABNORMAL SUSPENSOR 2, EMB14, EMB177, EMB33, EMBRYO DEFECTIVE 14, EMBRYO DEFECTIVE 177, EMBRYO DEFECTIVE 33, F18B13.15, F18B13_15, SUS2  gene SUS2  function a genetic locus involved in embryogenesis. Mutations in this locus result in an abnormal suspensor and embryo lethality.  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398||IEA  product SUS2 (ABNORMAL SUSPENSOR 2)  note ABNORMAL SUSPENSOR 2 (SUS2); INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555), Pre-mRNA-processing-splicing factor 8 (InterPro:IPR012591), PRO, C-terminal (InterPro:IPR012984), PROCN (InterPro:IPR012592); BEST Arabidopsis thaliana protein match is: splicing factor, putative (TAIR:AT4G38780.1); Has 543 Blast hits to 483 proteins in 188 species: Archae - 0; Bacteria - 2; Metazoa - 210; Fungi - 140; Plants - 33; Viruses - 2; Other Eukaryotes - 156 (source: NCBI BLink).  protein_id AT1G80070.1p  transcript_id AT1G80070.1  protein_id AT1G80070.1p  transcript_id AT1G80070.1  
At1g80080	chr1:030128073	0.0	C/30128073-30129563	AT1G80080.1  CDS  gene_syn AtRLP17, F18B13.16, F18B13_16, Receptor Like Protein 17, TMM, TOO MANY MOUTHS  gene TMM  function Encodes a transmembrane leucine-repeat containing receptor-like protein that is expressed in proliferative postprotodermal cells. Recessive mutation leads to disruption of asymmetric cell division during stomata development.  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process signal transduction|GO:0007165|11751054|IC  go_process asymmetric cell division|GO:0008356|9684356|IMP  go_process response to abscisic acid stimulus|GO:0009737|18434605|IMP  go_process stomatal complex morphogenesis|GO:0010103||IMP  go_function receptor activity|GO:0004872|12040198|ISS  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product TMM (TOO MANY MOUTHS); protein binding / receptor  note TOO MANY MOUTHS (TMM); FUNCTIONS IN: protein binding, receptor activity; INVOLVED IN: stomatal complex morphogenesis, signal transduction, asymmetric cell division, response to abscisic acid stimulus; LOCATED IN: anchored to membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP29 (Receptor Like Protein 29); protein binding (TAIR:AT2G42800.1); Has 57923 Blast hits to 19345 proteins in 776 species: Archae - 16; Bacteria - 2210; Metazoa - 20272; Fungi - 560; Plants - 31655; Viruses - 0; Other Eukaryotes - 3210 (source: NCBI BLink).  protein_id AT1G80080.1p  transcript_id AT1G80080.1  protein_id AT1G80080.1p  transcript_id AT1G80080.1  
At1g80090	chr1:030130104	0.0	W/30130104-30130331,30130406-30130695,30131009-30131252,30131329-30131433,30131514-30131855	AT1G80090.1  CDS  gene_syn F18B13.17, F18B13_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product CBS domain-containing protein  note CBS domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein (TAIR:AT1G15330.1); Has 323 Blast hits to 323 proteins in 91 species: Archae - 0; Bacteria - 21; Metazoa - 69; Fungi - 107; Plants - 93; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT1G80090.1p  transcript_id AT1G80090.1  protein_id AT1G80090.1p  transcript_id AT1G80090.1  
At1g80100	chr1:030133818	0.0	W/30133818-30133951,30134130-30134273,30134395-30134467,30134605-30134652	AT1G80100.2  CDS  gene_syn AHP6, ARABIDOPSIS HISTIDINE PHOSPHOTRANSFER PROTEIN 6, F18B13.18, F18B13_18  gene AHP6  function AHP6 lacks the conserved histidine residue (Asn83 in AHP6b), which is required for phosphotransfer, present in the other AHPs. AHP6 does not appear to have phosphotransfer activity. Acts as an inhibitor of cytokinin signaling by interacting with the phosphorelay machinery. Expressed in developing protoxylem and associated pericycle cell files. Negative regulator of cytokinin signaling. Expression is down-regulated by cytokinins. There are two alternatively spliced genes for this locus, AHP6a and AHP6b, differing in the length of the first exon. In ahp6-2 seedlings, only the AHP6a transcript is present. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).  go_component cellular_component|GO:0005575||ND  go_process two-component signal transduction system (phosphorelay)|GO:0000160|16400151|IDA  go_process response to cytokinin stimulus|GO:0009735|16400151|IEP  go_process cytokinin mediated signaling|GO:0009736|16400151|IMP  go_process xylem histogenesis|GO:0010089|16400151|IMP  go_function histidine phosphotransfer kinase activity|GO:0009927|16400151|IDA  go_function transferase activity, transferring phosphorus-containing groups|GO:0016772||ISS  product AHP6 (ARABIDOPSIS HISTIDINE PHOSPHOTRANSFER PROTEIN 6); histidine phosphotransfer kinase/ transferase, transferring phosphorus-containing groups  note ARABIDOPSIS HISTIDINE PHOSPHOTRANSFER PROTEIN 6 (AHP6); FUNCTIONS IN: transferase activity, transferring phosphorus-containing groups, histidine phosphotransfer kinase activity; INVOLVED IN: xylem histogenesis, cytokinin mediated signaling, response to cytokinin stimulus, two-component signal transduction system (phosphorelay); LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, phosphotransfer (Hpt) region (InterPro:IPR008207); BEST Arabidopsis thaliana protein match is: AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1); histidine phosphotransfer kinase (TAIR:AT3G21510.1); Has 134 Blast hits to 134 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G80100.2p  transcript_id AT1G80100.2  protein_id AT1G80100.2p  transcript_id AT1G80100.2  
At1g80100	chr1:030133818	0.0	W/30133818-30134017,30134130-30134273,30134395-30134467,30134605-30134652	AT1G80100.1  CDS  gene_syn AHP6, ARABIDOPSIS HISTIDINE PHOSPHOTRANSFER PROTEIN 6, F18B13.18, F18B13_18  gene AHP6  function AHP6 lacks the conserved histidine residue (Asn83 in AHP6b), which is required for phosphotransfer, present in the other AHPs. AHP6 does not appear to have phosphotransfer activity. Acts as an inhibitor of cytokinin signaling by interacting with the phosphorelay machinery. Expressed in developing protoxylem and associated pericycle cell files. Negative regulator of cytokinin signaling. Expression is down-regulated by cytokinins. There are two alternatively spliced genes for this locus, AHP6a and AHP6b, differing in the length of the first exon. In ahp6-2 seedlings, only the AHP6a transcript is present. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).  go_component cellular_component|GO:0005575||ND  go_process two-component signal transduction system (phosphorelay)|GO:0000160|16400151|IDA  go_process response to cytokinin stimulus|GO:0009735|16400151|IEP  go_process cytokinin mediated signaling|GO:0009736|16400151|IMP  go_process xylem histogenesis|GO:0010089|16400151|IMP  go_function histidine phosphotransfer kinase activity|GO:0009927|16400151|IDA  go_function transferase activity, transferring phosphorus-containing groups|GO:0016772||ISS  product AHP6 (ARABIDOPSIS HISTIDINE PHOSPHOTRANSFER PROTEIN 6); histidine phosphotransfer kinase/ transferase, transferring phosphorus-containing groups  note ARABIDOPSIS HISTIDINE PHOSPHOTRANSFER PROTEIN 6 (AHP6); FUNCTIONS IN: transferase activity, transferring phosphorus-containing groups, histidine phosphotransfer kinase activity; INVOLVED IN: xylem histogenesis, cytokinin mediated signaling, response to cytokinin stimulus, two-component signal transduction system (phosphorelay); LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, phosphotransfer (Hpt) region (InterPro:IPR008207); BEST Arabidopsis thaliana protein match is: AHP5 (HISTIDINE-CONTAINING PHOSPHOTRANSFER FACTOR 5); histidine phosphotransfer kinase (TAIR:AT1G03430.1); Has 141 Blast hits to 140 proteins in 20 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G80100.1p  transcript_id AT1G80100.1  protein_id AT1G80100.1p  transcript_id AT1G80100.1  
At1g80110	chr1:030135466	0.0	W/30135466-30135708,30136145-30136263,30136356-30136767	AT1G80110.1  CDS  gene_syn ARABIDOPSIS THALIANA PHLOEM PROTEIN 2-B11, ATPP2-B11, F18B13.19, F18B13_19  gene ATPP2-B11  go_component nucleus|GO:0005634|14617066|IDA  go_function carbohydrate binding|GO:0030246|12529520|ISS  product ATPP2-B11 (ARABIDOPSIS THALIANA PHLOEM PROTEIN 2-B11); carbohydrate binding  note ARABIDOPSIS THALIANA PHLOEM PROTEIN 2-B11 (ATPP2-B11); FUNCTIONS IN: carbohydrate binding; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: AtPP2-B12 (Phloem protein 2-B12); carbohydrate binding (TAIR:AT5G24560.1); Has 276 Blast hits to 269 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 276; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G80110.1p  transcript_id AT1G80110.1  protein_id AT1G80110.1p  transcript_id AT1G80110.1  
At1g80120	chr1:030139198	0.0	W/30139198-30139425,30139582-30139986	AT1G80120.1  CDS  gene_syn F18B13.20, F18B13_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15810.1); Has 212 Blast hits to 212 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 7; Plants - 205; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G80120.1p  transcript_id AT1G80120.1  protein_id AT1G80120.1p  transcript_id AT1G80120.1  
At1g80130	chr1:030141903	0.0	C/30141903-30142478,30141518-30141690,30141250-30141418	AT1G80130.1  CDS  gene_syn F18B13.21, F18B13_21  go_component membrane|GO:0016020|17432890|IDA  go_function binding|GO:0005488||IEA  go_process response to oxidative stress|GO:0006979|18614705|IMP  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: response to oxidative stress; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT5G20190.1); Has 623 Blast hits to 505 proteins in 110 species: Archae - 14; Bacteria - 217; Metazoa - 80; Fungi - 16; Plants - 202; Viruses - 5; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT1G80130.1p  transcript_id AT1G80130.1  protein_id AT1G80130.1p  transcript_id AT1G80130.1  
At1g80133	chr1:030144159	0.0	C/30144159-30144255,30143868-30144070	AT1G80133.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 101 Blast hits to 101 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G80133.1p  transcript_id AT1G80133.1  protein_id AT1G80133.1p  transcript_id AT1G80133.1  
At1g80140	chr1:030146611	0.0	W/30146611-30146703,30146813-30146989,30147203-30147410,30147490-30147571,30147654-30147876,30147953-30148180	AT1G80140.1  CDS  gene_syn F18B13.22, F18B13_22  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, leaf; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: polygalacturonase, putative / pectinase, putative (TAIR:AT1G70500.1); Has 2309 Blast hits to 2300 proteins in 286 species: Archae - 2; Bacteria - 392; Metazoa - 7; Fungi - 963; Plants - 874; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT1G80140.1p  transcript_id AT1G80140.1  protein_id AT1G80140.1p  transcript_id AT1G80140.1  
At1g80150	chr1:030148738	0.0	W/30148738-30149931	AT1G80150.1  CDS  gene_syn F18B13.23, F18B13_23  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: fruit; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G36680.1); Has 9628 Blast hits to 2984 proteins in 109 species: Archae - 3; Bacteria - 16; Metazoa - 74; Fungi - 80; Plants - 9190; Viruses - 0; Other Eukaryotes - 265 (source: NCBI BLink).  protein_id AT1G80150.1p  transcript_id AT1G80150.1  protein_id AT1G80150.1p  transcript_id AT1G80150.1  
At1g80160	chr1:030151101	0.0	W/30151101-30151255,30151357-30151462,30151688-30151930	AT1G80160.1  CDS  gene_syn F18B13.24, F18B13_24  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function lactoylglutathione lyase activity|GO:0004462||ISS  product lactoylglutathione lyase family protein / glyoxalase I family protein  note lactoylglutathione lyase family protein / glyoxalase I family protein; FUNCTIONS IN: lactoylglutathione lyase activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: lactoylglutathione lyase family protein / glyoxalase I family protein (TAIR:AT1G15380.2); Has 460 Blast hits to 460 proteins in 146 species: Archae - 0; Bacteria - 251; Metazoa - 0; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).  protein_id AT1G80160.1p  transcript_id AT1G80160.1  protein_id AT1G80160.1p  transcript_id AT1G80160.1  
At1g80160	chr1:030151280	0.0	W/30151280-30151462,30151688-30151930	AT1G80160.2  CDS  gene_syn F18B13.24, F18B13_24  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function lactoylglutathione lyase activity|GO:0004462||ISS  product lactoylglutathione lyase family protein / glyoxalase I family protein  note lactoylglutathione lyase family protein / glyoxalase I family protein; FUNCTIONS IN: lactoylglutathione lyase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: lactoylglutathione lyase family protein / glyoxalase I family protein (TAIR:AT1G15380.2); Has 78 Blast hits to 78 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G80160.2p  transcript_id AT1G80160.2  protein_id AT1G80160.2p  transcript_id AT1G80160.2  
At1g80170	chr1:030155474	0.0	C/30155474-30155683,30155212-30155343,30154932-30155102,30154823-30154843,30154540-30154747,30154383-30154464,30154209-30154317,30154009-30154125,30153646-30153930	AT1G80170.1  CDS  gene_syn F18B13.25, F18B13_25  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_function polygalacturonase activity|GO:0004650||ISS  product polygalacturonase, putative / pectinase, putative  note polygalacturonase, putative / pectinase, putative; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plant-type cell wall; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: polygalacturonase, putative / pectinase, putative (TAIR:AT1G70500.1); Has 2438 Blast hits to 2429 proteins in 297 species: Archae - 2; Bacteria - 459; Metazoa - 8; Fungi - 992; Plants - 896; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).  protein_id AT1G80170.1p  transcript_id AT1G80170.1  protein_id AT1G80170.1p  transcript_id AT1G80170.1  
At1g80180	chr1:030157057	0.0	C/30157057-30157473	AT1G80180.1  CDS  gene_syn F18B13.26, F18B13_26  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15400.3); Has 46 Blast hits to 46 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G80180.1p  transcript_id AT1G80180.1  protein_id AT1G80180.1p  transcript_id AT1G80180.1  
At1g80190	chr1:030159476	0.0	W/30159476-30159550,30159800-30159867,30159960-30160073,30160157-30160328,30160430-30160579,30161089-30161115	AT1G80190.1  CDS  gene_syn F18B13.27, F18B13_27, PARTNER OF SLD FIVE 1, PSF1  gene PSF1  function Similar to the PSF1 component of GINS complex, which in other organism was shown to be involved in the initiation of DNA replication.  go_component chloroplast|GO:0009507|15028209|IDA  go_component GINS complex|GO:0000811|17556508|ISS  go_process DNA replication initiation|GO:0006270|17556508|TAS  go_function molecular_function|GO:0003674||ND  product PSF1 (PARTNER OF SLD FIVE 1)  note PARTNER OF SLD FIVE 1 (PSF1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA replication initiation; LOCATED IN: GINS complex, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GINS complex, Psf1 component (InterPro:IPR005339); Has 241 Blast hits to 241 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 108; Fungi - 97; Plants - 19; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G80190.1p  transcript_id AT1G80190.1  protein_id AT1G80190.1p  transcript_id AT1G80190.1  
At1g80200	chr1:030162034	0.0	W/30162034-30162128,30162231-30162317,30162395-30162629,30162712-30162999	AT1G80200.1  CDS  gene_syn F18B13.33, F18B13_33  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11280.1); Has 21 Blast hits to 21 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G80200.1p  transcript_id AT1G80200.1  protein_id AT1G80200.1p  transcript_id AT1G80200.1  
At1g80210	chr1:030165518	0.0	C/30165518-30165628,30165136-30165264,30164938-30165025,30164776-30164861,30164456-30164671,30164097-30164269,30163854-30164012,30163689-30163769,30163546-30163618	AT1G80210.2  CDS  gene_syn F18B13.28, F18B13_28  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: mov34 family protein (TAIR:AT3G06820.2); Has 803 Blast hits to 722 proteins in 170 species: Archae - 0; Bacteria - 3; Metazoa - 437; Fungi - 151; Plants - 118; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).  protein_id AT1G80210.2p  transcript_id AT1G80210.2  protein_id AT1G80210.2p  transcript_id AT1G80210.2  
At1g80210	chr1:030165518	0.0	C/30165518-30165628,30165136-30165264,30164938-30165025,30164776-30164861,30164456-30164671,30164097-30164269,30163854-30164012,30163689-30163769,30163564-30163618,30163357-30163479	AT1G80210.1  CDS  gene_syn F18B13.28, F18B13_28  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: mov34 family protein (TAIR:AT3G06820.2); Has 785 Blast hits to 706 proteins in 167 species: Archae - 0; Bacteria - 3; Metazoa - 423; Fungi - 147; Plants - 120; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).  protein_id AT1G80210.1p  transcript_id AT1G80210.1  protein_id AT1G80210.1p  transcript_id AT1G80210.1  
At1g80220	chr1:030167839	0.0	W/30167839-30168606	AT1G80220.1  CDS  gene_syn F18B13.34, F18B13_34  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT2G26050.1); Has 170 Blast hits to 161 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G80220.1p  transcript_id AT1G80220.1  protein_id AT1G80220.1p  transcript_id AT1G80220.1  
At1g80230	chr1:030170825	0.0	C/30170825-30170999,30170562-30170647,30170270-30170320,30170112-30170178,30169937-30170016,30169784-30169840	AT1G80230.1  CDS  gene_syn F18B13.29, F18B13_29  go_component mitochondrion|GO:0005739|18385124|IDA  go_function cytochrome-c oxidase activity|GO:0004129||IEA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial envelope|GO:0005740||ISS  go_function cytochrome-c oxidase activity|GO:0004129||ISS  product cytochrome c oxidase family protein  note cytochrome c oxidase family protein; FUNCTIONS IN: cytochrome-c oxidase activity; LOCATED IN: mitochondrial envelope, mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase, subunit Vb (InterPro:IPR002124); BEST Arabidopsis thaliana protein match is: cytochrome c oxidase family protein (TAIR:AT3G15640.1); Has 341 Blast hits to 341 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 189; Fungi - 63; Plants - 54; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT1G80230.1p  transcript_id AT1G80230.1  protein_id AT1G80230.1p  transcript_id AT1G80230.1  
At1g80240	chr1:030172718	0.0	C/30172718-30172799,30172142-30172639,30171520-30172052	AT1G80240.1  CDS  gene_syn F18B13.30, F18B13_30  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: root, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25460.1); Has 193 Blast hits to 159 proteins in 13 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 189; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G80240.1p  transcript_id AT1G80240.1  protein_id AT1G80240.1p  transcript_id AT1G80240.1  
At1g80250	chr1:030174014	0.0	C/30174014-30174085	AT1G80250.1  tRNA  gene_syn 51605.TRNA-TRP-1, 60014.TRNA-TRP-1, AT1G80242  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Trp (anticodon: CCA)  transcript_id AT1G80250.1  
At1g80245	chr1:030174547	0.0	W/30174547-30174627,30174710-30174812,30174944-30175133,30175208-30175217	AT1G80245.1  CDS  go_component spindle pole|GO:0000922||IEA  go_component microtubule organizing center|GO:0005815||IEA  go_process microtubule cytoskeleton organization|GO:0000226||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: spindle pole, microtubule organizing center; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00695.2); Has 17 Blast hits to 17 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G80245.1p  transcript_id AT1G80245.1  protein_id AT1G80245.1p  transcript_id AT1G80245.1  
At1g80245	chr1:030174547	0.0	W/30174547-30174627,30174710-30174812,30174944-30175133,30175208-30175217	AT1G80245.2  CDS  go_component spindle pole|GO:0000922||IEA  go_component microtubule organizing center|GO:0005815||IEA  go_process microtubule cytoskeleton organization|GO:0000226||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: spindle pole, microtubule organizing center; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00695.2); Has 17 Blast hits to 17 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G80245.2p  transcript_id AT1G80245.2  protein_id AT1G80245.2p  transcript_id AT1G80245.2  
At1g80245	chr1:030174547	0.0	W/30174547-30174627,30174710-30174812,30174944-30175133,30175208-30175217	AT1G80245.3  CDS  go_component spindle pole|GO:0000922||IEA  go_component microtubule organizing center|GO:0005815||IEA  go_process microtubule cytoskeleton organization|GO:0000226||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: spindle pole, microtubule organizing center; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00695.2); Has 17 Blast hits to 17 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G80245.3p  transcript_id AT1G80245.3  protein_id AT1G80245.3p  transcript_id AT1G80245.3  
At1g80260	chr1:030175924	0.0	W/30175924-30176040,30176119-30176379,30176467-30176564,30176663-30176825,30176920-30177030,30177143-30178147,30178260-30178412,30178498-30178597,30178672-30178766,30178934-30179119,30179220-30179276,30179356-30179427,30179603-30179701,30179857-30179988,30180089-30180262,30180347-30180511	AT1G80260.1  CDS  gene_syn F5I6.1, F5I6_1, emb1427, embryo defective 1427  gene emb1427  go_component spindle pole|GO:0000922||IEA  go_component microtubule organizing center|GO:0005815||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function tubulin binding|GO:0015631||ISS  product emb1427 (embryo defective 1427); tubulin binding  note embryo defective 1427 (emb1427); FUNCTIONS IN: tubulin binding; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: spindle pole, microtubule organizing center; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: tubulin family protein (TAIR:AT1G20570.1); Has 862 Blast hits to 756 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 499; Fungi - 171; Plants - 101; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).  protein_id AT1G80260.1p  transcript_id AT1G80260.1  protein_id AT1G80260.1p  transcript_id AT1G80260.1  
At1g80270	chr1:030181265	0.0	W/30181265-30181293,30181484-30181997,30182084-30183331	AT1G80270.1  CDS  gene_syn F5I6.2, F5I6_2  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product DNA-binding protein, putative  note DNA-binding protein, putative; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT1G15480.1); Has 5563 Blast hits to 2653 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 76; Plants - 5213; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT1G80270.1p  transcript_id AT1G80270.1  protein_id AT1G80270.1p  transcript_id AT1G80270.1  
At1g80270	chr1:030181265	0.0	W/30181265-30181293,30181484-30181997,30182084-30183331	AT1G80270.2  CDS  gene_syn F5I6.2, F5I6_2  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product DNA-binding protein, putative  note DNA-binding protein, putative; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT1G15480.1); Has 5563 Blast hits to 2653 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 76; Plants - 5213; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT1G80270.2p  transcript_id AT1G80270.2  protein_id AT1G80270.2p  transcript_id AT1G80270.2  
At1g80270	chr1:030181265	0.0	W/30181265-30181293,30181484-30181997,30182084-30183331	AT1G80270.3  CDS  gene_syn F5I6.2, F5I6_2  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product DNA-binding protein, putative  note DNA-binding protein, putative; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT1G15480.1); Has 5563 Blast hits to 2653 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 76; Plants - 5213; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT1G80270.3p  transcript_id AT1G80270.3  protein_id AT1G80270.3p  transcript_id AT1G80270.3  
At1g80280	chr1:030185877	0.0	C/30185877-30186141,30185482-30185789,30184663-30185394,30184030-30184557,30183839-30183949	AT1G80280.1  CDS  gene_syn F5I6.3, F5I6_3  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT1G15490.1); Has 5082 Blast hits to 5073 proteins in 749 species: Archae - 32; Bacteria - 3526; Metazoa - 248; Fungi - 43; Plants - 290; Viruses - 0; Other Eukaryotes - 943 (source: NCBI BLink).  protein_id AT1G80280.1p  transcript_id AT1G80280.1  protein_id AT1G80280.1p  transcript_id AT1G80280.1  
At1g80290	chr1:030188420	0.0	W/30188420-30188437,30188579-30189574	AT1G80290.2  CDS  gene_syn F5I6.4, F5I6_4  function a member of the Glycosyltransferase Family 64 (according to CAZy Database)  go_component intrinsic to endoplasmic reticulum membrane|GO:0031227||IEA  go_process biological_process|GO:0008150||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyltransferase family protein 47  note glycosyltransferase family protein 47; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: intrinsic to endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EXTL2, alpha-1,4-N-acetylhexosaminyltransferase (InterPro:IPR015338); BEST Arabidopsis thaliana protein match is: EPC1 (ECTOPICALLY PARTING CELLS); UDP-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT3G55830.1); Has 498 Blast hits to 498 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 420; Fungi - 2; Plants - 47; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G80290.2p  transcript_id AT1G80290.2  protein_id AT1G80290.2p  transcript_id AT1G80290.2  
At1g80290	chr1:030188585	0.0	W/30188585-30189574	AT1G80290.1  CDS  gene_syn F5I6.4, F5I6_4  function a member of the Glycosyltransferase Family 64 (according to CAZy Database)  go_component endomembrane system|GO:0012505||IEA  go_component intrinsic to endoplasmic reticulum membrane|GO:0031227||IEA  go_process biological_process|GO:0008150||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyltransferase family protein 47  note glycosyltransferase family protein 47; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, intrinsic to endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EXTL2, alpha-1,4-N-acetylhexosaminyltransferase (InterPro:IPR015338); BEST Arabidopsis thaliana protein match is: EPC1 (ECTOPICALLY PARTING CELLS); UDP-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT3G55830.1); Has 498 Blast hits to 498 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 420; Fungi - 2; Plants - 47; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G80290.1p  transcript_id AT1G80290.1  protein_id AT1G80290.1p  transcript_id AT1G80290.1  
At1g80300	chr1:030191954	0.0	W/30191954-30192742,30192946-30193200,30193290-30193433,30193515-30193862,30193942-30194280	AT1G80300.1  CDS  gene_syn AATP1, ATNTT1, F5I6.5, F5I6_5, NTT1, NUCLEOTIDE TRANSPORTER 1  gene NTT1  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process transport|GO:0006810||IEA  go_function ATP:ADP antiporter activity|GO:0005471||ISS  product NTT1 (NUCLEOTIDE TRANSPORTER 1); ATP:ADP antiporter  note NUCLEOTIDE TRANSPORTER 1 (NTT1); FUNCTIONS IN: ATP:ADP antiporter activity; INVOLVED IN: transport; LOCATED IN: membrane, chloroplast envelope; EXPRESSED IN: stem, guard cell, root, callus, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: ADP/ATP carrier protein (InterPro:IPR004667); BEST Arabidopsis thaliana protein match is: ATNTT2; ATP:ADP antiporter (TAIR:AT1G15500.1); Has 587 Blast hits to 585 proteins in 128 species: Archae - 0; Bacteria - 365; Metazoa - 2; Fungi - 15; Plants - 64; Viruses - 0; Other Eukaryotes - 141 (source: NCBI BLink).  protein_id AT1G80300.1p  transcript_id AT1G80300.1  protein_id AT1G80300.1p  transcript_id AT1G80300.1  
At1g80310	chr1:030194951	0.0	W/30194951-30196345	AT1G80310.1  CDS  gene_syn F5I6.6, F5I6_6  go_component vacuole|GO:0005773|15539469|IDA  go_process response to salt stress|GO:0009651|11351099|IEP  go_function sulfate transmembrane transporter activity|GO:0015116||ISS  product sulfate transmembrane transporter  note sulfate transmembrane transporter; FUNCTIONS IN: sulfate transmembrane transporter activity; INVOLVED IN: response to salt stress; LOCATED IN: vacuole; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Sulphate transporter (InterPro:IPR011547); BEST Arabidopsis thaliana protein match is: MOT1 (molybdate transporter 1); molybdate ion transmembrane transporter/ sulfate transmembrane transporter (TAIR:AT2G25680.1); Has 562 Blast hits to 559 proteins in 230 species: Archae - 14; Bacteria - 363; Metazoa - 24; Fungi - 36; Plants - 43; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT1G80310.1p  transcript_id AT1G80310.1  protein_id AT1G80310.1p  transcript_id AT1G80310.1  
At1g80325	chr1:030196605	0.0	C/30196605-30197933	AT1G80325.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G80320  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G80325.1  
At1g80325	chr1:030196666	0.0	C/30196666-30198074	AT1G80325.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT1G80320  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G80325.2  
At1g80320	chr1:030196782	0.0	W/30196782-30197158,30197232-30197559,30197639-30197896	AT1G80320.1  CDS  gene_syn F5I6.7, F5I6_7  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT1G15540.1); Has 3679 Blast hits to 3633 proteins in 489 species: Archae - 0; Bacteria - 380; Metazoa - 45; Fungi - 280; Plants - 2476; Viruses - 0; Other Eukaryotes - 498 (source: NCBI BLink).  protein_id AT1G80320.1p  transcript_id AT1G80320.1  protein_id AT1G80320.1p  transcript_id AT1G80320.1  
At1g80330	chr1:030199068	0.0	C/30199068-30199537,30198061-30198658	AT1G80330.1  CDS  gene_syn ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 4, ATGA3OX4, F5I6.8, F5I6_8, GA3OX4, GIBBERELLIN 3-OXIDASE 4  gene GA3OX4  function Encodes a protein with gibberellin 3-oxidase activity. The enzyme, expressed and purified in E.coli, was shown to catalyze the 3& 946;-hydroxylation of GA20 into GA29.  go_process gibberellin biosynthetic process|GO:0009686|16181493|IDA  go_function gibberellin 3-beta-dioxygenase activity|GO:0016707|16181493|IDA  product GA3OX4 (GIBBERELLIN 3-OXIDASE 4); gibberellin 3-beta-dioxygenase  note GIBBERELLIN 3-OXIDASE 4 (GA3OX4); FUNCTIONS IN: gibberellin 3-beta-dioxygenase activity; INVOLVED IN: gibberellin biosynthetic process; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: GA3OX1 (GIBBERELLIN 3-OXIDASE 1); gibberellin 3-beta-dioxygenase/ transcription factor binding (TAIR:AT1G15550.1); Has 5784 Blast hits to 5764 proteins in 683 species: Archae - 0; Bacteria - 722; Metazoa - 115; Fungi - 636; Plants - 3062; Viruses - 0; Other Eukaryotes - 1249 (source: NCBI BLink).  protein_id AT1G80330.1p  transcript_id AT1G80330.1  protein_id AT1G80330.1p  transcript_id AT1G80330.1  
At1g80340	chr1:030201694	0.0	C/30201694-30202163,30200695-30201268	AT1G80340.1  CDS  gene_syn ARABIDOPSIS THALIANA GIBBERELLIN-3-OXIDASE 2, ATGA3OX2, F5I6.9, F5I6_9, GA3OX2, GA4H, GIBBERELLIN 3 BETA-HYDROXYLASE, GIBBERELLIN 3-OXIDASE 2  gene GA3OX2  function Encodes a protein with gibberellin 3 & 946;-hydroxylase activity. The protein was heterologously expressed in E. coli and shown to catalyze the hydroxylation of both GA9 and GA20.  go_component cellular_component|GO:0005575||ND  go_process response to red or far red light|GO:0009639|17010113|IEP  go_process gibberellin biosynthetic process|GO:0009686|15923331|TAS  go_process gibberellin biosynthetic process|GO:0009686|9836749|IDA  go_process seed germination|GO:0009845|9836749|IEP  go_process response to red light|GO:0010114|17449805|IEP  go_function gibberellin 3-beta-dioxygenase activity|GO:0016707|9836749|IDA  product GA3OX2 (GIBBERELLIN 3-OXIDASE 2); gibberellin 3-beta-dioxygenase  note GIBBERELLIN 3-OXIDASE 2 (GA3OX2); FUNCTIONS IN: gibberellin 3-beta-dioxygenase activity; INVOLVED IN: response to red or far red light, response to red light, gibberellin biosynthetic process, seed germination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: GA3OX1 (GIBBERELLIN 3-OXIDASE 1); gibberellin 3-beta-dioxygenase/ transcription factor binding (TAIR:AT1G15550.1); Has 5825 Blast hits to 5807 proteins in 682 species: Archae - 0; Bacteria - 725; Metazoa - 115; Fungi - 625; Plants - 3064; Viruses - 0; Other Eukaryotes - 1296 (source: NCBI BLink).  protein_id AT1G80340.1p  transcript_id AT1G80340.1  protein_id AT1G80340.1p  transcript_id AT1G80340.1  
At1g80350	chr1:030207923	0.0	C/30207923-30208050,30207220-30207691,30206691-30206888,30206277-30206521,30206043-30206201,30205870-30205957,30205499-30205780	AT1G80350.1  CDS  gene_syn AAA1, ARABIDOPSIS THALIANA KATANIN SMALL SUBUNIT, ATKSS, ATKTN1, BOT1, BOTERO 1, CAD ATPASE, ECTOPIC ROOT HAIR 3, ERH3, F5I6.10, F5I6_10, FAT ROOT, FRA2, FRAGILE FIBER 2, FRC2, FTR, FURCA2, KATANIN 1, KTN1, LUE1  gene ERH3  function encodes a p60 katanin protein that is expressed throughout the plant. Required for the specification of cell fates from early in development (in the meristem) through differentiation and for normal postmitotic organization of cortical microtubules into transverse arrays in root epidermis cells. Mutants display cytoskeletal defects.  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component katanin complex|GO:0008352|11782406|ISS  go_process microtubule cytoskeleton organization|GO:0000226|11169190|IMP  go_process multidimensional cell growth|GO:0009825|11169190|IMP  go_process plant-type cell wall biogenesis|GO:0009832|11283338|IMP  go_process trichome branching|GO:0010091|10572032|IMP  go_process cortical microtubule organization|GO:0043622|16805733|IMP  product ERH3 (ECTOPIC ROOT HAIR 3); ATP binding / nucleoside-triphosphatase/ nucleotide binding  note ECTOPIC ROOT HAIR 3 (ERH3); FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: cortical microtubule organization, trichome branching, plant-type cell wall biogenesis, multidimensional cell growth, microtubule cytoskeleton organization; LOCATED IN: katanin complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Vps4 oligomerisation, C-terminal (InterPro:IPR015415); BEST Arabidopsis thaliana protein match is: katanin, putative (TAIR:AT2G34560.2); Has 21797 Blast hits to 20231 proteins in 1779 species: Archae - 866; Bacteria - 6820; Metazoa - 3957; Fungi - 2140; Plants - 1523; Viruses - 18; Other Eukaryotes - 6473 (source: NCBI BLink).  protein_id AT1G80350.1p  transcript_id AT1G80350.1  protein_id AT1G80350.1p  transcript_id AT1G80350.1  
At1g80360	chr1:030210581	0.0	C/30210581-30210643,30210429-30210476,30210142-30210270,30209940-30209999,30209692-30209848,30209447-30209612,30209263-30209371,30208736-30209188	AT1G80360.1  CDS  gene_syn F5I6.11, F5I6_11  go_process asparagine catabolic process|GO:0006530||IEA  go_process biosynthetic process|GO:0009058||IEA  go_process aspartate transamidation|GO:0019465||IEA  go_process glutamate catabolic process to oxaloacetate|GO:0019554||IEA  go_function catalytic activity|GO:0003824||IEA  go_function transferase activity, transferring nitrogenous groups|GO:0016769||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_function transaminase activity|GO:0008483||ISS  product aminotransferase class I and II family protein  note aminotransferase class I and II family protein; FUNCTIONS IN: transferase activity, transferring nitrogenous groups, pyridoxal phosphate binding, transaminase activity, catalytic activity; INVOLVED IN: asparagine catabolic process, biosynthetic process, glutamate catabolic process to oxaloacetate, aspartate transamidation; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: aminotransferase class I and II family protein (TAIR:AT2G22250.3); Has 24017 Blast hits to 24017 proteins in 1733 species: Archae - 643; Bacteria - 14251; Metazoa - 522; Fungi - 502; Plants - 867; Viruses - 0; Other Eukaryotes - 7232 (source: NCBI BLink).  protein_id AT1G80360.1p  transcript_id AT1G80360.1  protein_id AT1G80360.1p  transcript_id AT1G80360.1  
At1g80370	chr1:030214694	0.0	W/30214694-30214969,30215066-30215294,30215384-30215505,30215585-30215677,30215757-30215890,30215962-30216114,30216202-30216235,30216329-30216478,30216563-30216697,30216802-30216861	AT1G80370.1  CDS  gene_syn CYCA2;4, Cyclin A2;4, F5I6.12, F5I6_12  gene CYCA2;4  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase regulator activity|GO:0016538||ISS  product CYCA2;4 (Cyclin A2;4); cyclin-dependent protein kinase regulator  note Cyclin A2;4 (CYCA2;4); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin (InterPro:IPR006670), G2/mitotic-specific cyclin A (InterPro:IPR015453), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400); BEST Arabidopsis thaliana protein match is: CYCA2;3 (CYCLIN A2;3); cyclin-dependent protein kinase regulator (TAIR:AT1G15570.1); Has 3246 Blast hits to 3242 proteins in 295 species: Archae - 0; Bacteria - 2; Metazoa - 1694; Fungi - 369; Plants - 673; Viruses - 35; Other Eukaryotes - 473 (source: NCBI BLink).  protein_id AT1G80370.1p  transcript_id AT1G80370.1  protein_id AT1G80370.1p  transcript_id AT1G80370.1  
At1g80380	chr1:030217332	0.0	W/30217332-30217575,30217863-30218233,30218928-30218945,30219061-30219204,30219294-30219410,30219493-30219543,30219641-30219784	AT1G80380.1  CDS  gene_syn F5I6.13, F5I6_13  function encodes a glycerate kinase which catalyzes the last step of photorespiration C2 cycle.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast|GO:0009507|15980259|ISS  go_process photorespiration|GO:0009853|15980259|IMP  go_function glycerate kinase activity|GO:0008887|15980259|IDA  product phosphoribulokinase/uridine kinase-related  note phosphoribulokinase/uridine kinase-related; FUNCTIONS IN: glycerate kinase activity; INVOLVED IN: photorespiration; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 597 Blast hits to 577 proteins in 130 species: Archae - 0; Bacteria - 131; Metazoa - 0; Fungi - 95; Plants - 49; Viruses - 0; Other Eukaryotes - 322 (source: NCBI BLink).  protein_id AT1G80380.1p  transcript_id AT1G80380.1  protein_id AT1G80380.1p  transcript_id AT1G80380.1  
At1g80380	chr1:030217332	0.0	W/30217332-30217575,30217863-30218248,30218338-30218417,30218493-30218544,30218636-30218677,30218756-30218834,30218914-30218945,30219061-30219204,30219294-30219410,30219493-30219543,30219641-30219784	AT1G80380.2  CDS  gene_syn F5I6.13, F5I6_13  function encodes a glycerate kinase which catalyzes the last step of photorespiration C2 cycle.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast|GO:0009507|15980259|ISS  go_process photorespiration|GO:0009853|15980259|IMP  go_function glycerate kinase activity|GO:0008887|15980259|IDA  product phosphoribulokinase/uridine kinase-related  note phosphoribulokinase/uridine kinase-related; FUNCTIONS IN: glycerate kinase activity; INVOLVED IN: photorespiration; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1273 Blast hits to 1269 proteins in 151 species: Archae - 0; Bacteria - 167; Metazoa - 0; Fungi - 95; Plants - 31; Viruses - 0; Other Eukaryotes - 980 (source: NCBI BLink).  protein_id AT1G80380.2p  transcript_id AT1G80380.2  protein_id AT1G80380.2p  transcript_id AT1G80380.2  
At1g80380	chr1:030217895	0.0	W/30217895-30218248,30218338-30218417,30218493-30218544,30218636-30218677,30218756-30218834,30218914-30218945,30219061-30219204,30219294-30219410,30219493-30219543,30219641-30219784	AT1G80380.3  CDS  gene_syn F5I6.13, F5I6_13  function encodes a glycerate kinase which catalyzes the last step of photorespiration C2 cycle.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|15980259|ISS  go_process photorespiration|GO:0009853|15980259|IMP  go_function glycerate kinase activity|GO:0008887|15980259|IDA  product phosphoribulokinase/uridine kinase-related  note phosphoribulokinase/uridine kinase-related; FUNCTIONS IN: glycerate kinase activity; INVOLVED IN: photorespiration; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1273 Blast hits to 1269 proteins in 151 species: Archae - 0; Bacteria - 167; Metazoa - 0; Fungi - 95; Plants - 31; Viruses - 0; Other Eukaryotes - 980 (source: NCBI BLink).  protein_id AT1G80380.3p  transcript_id AT1G80380.3  protein_id AT1G80380.3p  transcript_id AT1G80380.3  
At1g80390	chr1:030222500	0.0	C/30222500-30222702,30222229-30222407,30222020-30222113,30221780-30221843	AT1G80390.1  CDS  gene_syn F5I6.14, F5I6_14, IAA15, INDOLE-3-ACETIC ACID INDUCIBLE 15  gene IAA15  function Member of a multigene family of Auxin responsive genes.  go_component nucleus|GO:0005634||IEA  go_process response to auxin stimulus|GO:0009733|12036262|TAS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product IAA15 (INDOLE-3-ACETIC ACID INDUCIBLE 15); transcription factor  note INDOLE-3-ACETIC ACID INDUCIBLE 15 (IAA15); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to auxin stimulus, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14); protein binding / transcription factor/ transcription repressor (TAIR:AT4G14550.1); Has 1017 Blast hits to 1017 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1017; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G80390.1p  transcript_id AT1G80390.1  protein_id AT1G80390.1p  transcript_id AT1G80390.1  
At1g80400	chr1:030225864	0.0	W/30225864-30226516,30226588-30226713,30226790-30227069,30227196-30227360	AT1G80400.1  CDS  gene_syn F5I6.15, F5I6_15  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G32600.1); Has 6832 Blast hits to 6808 proteins in 226 species: Archae - 0; Bacteria - 8; Metazoa - 2224; Fungi - 538; Plants - 2793; Viruses - 41; Other Eukaryotes - 1228 (source: NCBI BLink).  protein_id AT1G80400.1p  transcript_id AT1G80400.1  protein_id AT1G80400.1p  transcript_id AT1G80400.1  
At1g80410	chr1:030234782	0.0	C/30234782-30234832,30234216-30234294,30233749-30233831,30233492-30233641,30233207-30233322,30232784-30232889,30232316-30232387,30232109-30232224,30231773-30231905,30231524-30231601,30231387-30231440,30231215-30231285,30231014-30231068,30230823-30230918,30230429-30230557,30230245-30230327,30229918-30230148,30229667-30229790,30229487-30229594,30229258-30229389,30229093-30229149,30228851-30228948,30228712-30228770,30228514-30228625,30228322-30228422,30227963-30228162	AT1G80410.1  CDS  gene_syn EMB2753, EMBRYO DEFECTIVE 2753, T21F11.26, T21F11_26  gene EMB2753  go_component membrane|GO:0016020|17432890|IDA  go_function binding|GO:0005488||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product EMB2753 (EMBRYO DEFECTIVE 2753); binding  note EMBRYO DEFECTIVE 2753 (EMB2753); FUNCTIONS IN: binding; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); Has 3255 Blast hits to 2440 proteins in 375 species: Archae - 356; Bacteria - 819; Metazoa - 489; Fungi - 174; Plants - 61; Viruses - 3; Other Eukaryotes - 1353 (source: NCBI BLink).  protein_id AT1G80410.1p  transcript_id AT1G80410.1  protein_id AT1G80410.1p  transcript_id AT1G80410.1  
At1g80420	chr1:030236975	0.0	C/30236975-30237163,30236686-30236874,30236484-30236595,30236228-30236313,30236022-30236135,30235856-30235942,30235444-30235728	AT1G80420.1  CDS  gene_syn T21F11.25, T21F11_25  go_component intracellular|GO:0005622||IEA  go_component intracellular|GO:0005622||ISS  go_process DNA repair|GO:0006281||ISS  go_function transcription coactivator activity|GO:0003713||ISS  product DNA repair protein, putative (XRCC1)  note DNA repair protein, putative (XRCC1); FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: DNA repair; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); Has 209 Blast hits to 209 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 141; Fungi - 20; Plants - 26; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT1G80420.1p  transcript_id AT1G80420.1  protein_id AT1G80420.1p  transcript_id AT1G80420.1  
At1g80420	chr1:030236975	0.0	C/30236975-30237163,30236686-30236874,30236484-30236595,30236228-30236313,30236022-30236135,30235856-30235942,30235444-30235728	AT1G80420.2  CDS  gene_syn T21F11.25, T21F11_25  go_component intracellular|GO:0005622||IEA  go_component intracellular|GO:0005622||ISS  go_process DNA repair|GO:0006281||ISS  go_function transcription coactivator activity|GO:0003713||ISS  product DNA repair protein, putative (XRCC1)  note DNA repair protein, putative (XRCC1); FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: DNA repair; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); Has 209 Blast hits to 209 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 141; Fungi - 20; Plants - 26; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT1G80420.2p  transcript_id AT1G80420.2  protein_id AT1G80420.2p  transcript_id AT1G80420.2  
At1g80420	chr1:030236975	0.0	C/30236975-30237163,30236686-30236874,30236484-30236595,30236228-30236313,30236022-30236135,30235856-30235942,30235444-30235728	AT1G80420.3  CDS  gene_syn T21F11.25, T21F11_25  go_component intracellular|GO:0005622||IEA  go_component intracellular|GO:0005622||ISS  go_process DNA repair|GO:0006281||ISS  go_function transcription coactivator activity|GO:0003713||ISS  product DNA repair protein, putative (XRCC1)  note DNA repair protein, putative (XRCC1); FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: DNA repair; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); Has 209 Blast hits to 209 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 141; Fungi - 20; Plants - 26; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT1G80420.3p  transcript_id AT1G80420.3  protein_id AT1G80420.3p  transcript_id AT1G80420.3  
At1g80430	chr1:030237784	0.0	W/30237784-30237865	AT1G80430.1  tRNA  gene_syn 60014.TRNA-SER-1, 60054.TRNA-SER-1, AT1G80435  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT1G80430.1  
At1g80440	chr1:030241763	0.0	W/30241763-30242827	AT1G80440.1  CDS  gene_syn T21F11.23, T21F11_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT1G15670.1); Has 1925 Blast hits to 1593 proteins in 138 species: Archae - 8; Bacteria - 96; Metazoa - 1275; Fungi - 35; Plants - 425; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT1G80440.1p  transcript_id AT1G80440.1  protein_id AT1G80440.1p  transcript_id AT1G80440.1  
At1g80450	chr1:030244155	0.0	C/30244155-30244688	AT1G80450.1  CDS  gene_syn T21F11.22, T21F11_22  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product VQ motif-containing protein  note VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT5G08480.2); Has 68 Blast hits to 68 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G80450.1p  transcript_id AT1G80450.1  protein_id AT1G80450.1p  transcript_id AT1G80450.1  
At1g80460	chr1:030248922	0.0	C/30248922-30249055,30248394-30248615,30247307-30248273,30246960-30247205	AT1G80460.1  CDS  gene_syn GLI1, NHO1, T21F11.21, T21F11_21, nonhost resistance to P. s. phaseolicola 1  gene NHO1  function Encodes a protein similar to glycerol kinase, which converts glycerol to glycerol 3-phosphate and performs a rate-limiting step in glycerol metabolism. This gene is required for both general and specific resistance against bacteria and fungi. Arabidopsis thaliana glycerol kinase (GLR1) mRNA.Involved in flagellin-induced non-host resistance to Pseudomonas. Coronatine partially suppresses flagellin-induced expression of NHO1.  go_component cellular_component|GO:0005575||ND  go_process response to molecule of bacterial origin|GO:0002237|16123135|IEP  go_process carbohydrate metabolic process|GO:0005975||ISS  go_process response to bacterium|GO:0009617|11226196|IEP  go_process response to microbial phytotoxin|GO:0010188|16123135|IEP  go_process glycerol catabolic process|GO:0019563|14756771|IMP  go_process defense response to bacterium|GO:0042742|11226196|IMP  go_function glycerol kinase activity|GO:0004370|11226196|ISS  go_function glycerol kinase activity|GO:0004370|14756771|IDA  go_function carbohydrate kinase activity|GO:0019200||ISS  product NHO1 (nonhost resistance to P. s. phaseolicola 1); carbohydrate kinase/ glycerol kinase  note nonhost resistance to P. s. phaseolicola 1 (NHO1); FUNCTIONS IN: glycerol kinase activity, carbohydrate kinase activity; INVOLVED IN: in 6 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate kinase, FGGY, conserved site (InterPro:IPR018483), Glycerol kinase (InterPro:IPR005999), Carbohydrate kinase, FGGY (InterPro:IPR000577), Carbohydrate kinase, FGGY, N-terminal (InterPro:IPR018484), Carbohydrate kinase, FGGY, C-terminal (InterPro:IPR018485); Has 10647 Blast hits to 10635 proteins in 1355 species: Archae - 84; Bacteria - 6207; Metazoa - 576; Fungi - 123; Plants - 57; Viruses - 0; Other Eukaryotes - 3600 (source: NCBI BLink).  protein_id AT1G80460.1p  transcript_id AT1G80460.1  protein_id AT1G80460.1p  transcript_id AT1G80460.1  
At1g80460	chr1:030248922	0.0	C/30248922-30249055,30248394-30248615,30247345-30248273,30246960-30247123	AT1G80460.2  CDS  gene_syn GLI1, NHO1, T21F11.21, T21F11_21, nonhost resistance to P. s. phaseolicola 1  gene NHO1  function Encodes a protein similar to glycerol kinase, which converts glycerol to glycerol 3-phosphate and performs a rate-limiting step in glycerol metabolism. This gene is required for both general and specific resistance against bacteria and fungi. Arabidopsis thaliana glycerol kinase (GLR1) mRNA.Involved in flagellin-induced non-host resistance to Pseudomonas. Coronatine partially suppresses flagellin-induced expression of NHO1.  go_component cellular_component|GO:0005575||ND  go_process response to molecule of bacterial origin|GO:0002237|16123135|IEP  go_process carbohydrate metabolic process|GO:0005975||ISS  go_process response to bacterium|GO:0009617|11226196|IEP  go_process response to microbial phytotoxin|GO:0010188|16123135|IEP  go_process glycerol catabolic process|GO:0019563|14756771|IMP  go_process defense response to bacterium|GO:0042742|11226196|IMP  go_function glycerol kinase activity|GO:0004370|11226196|ISS  go_function glycerol kinase activity|GO:0004370|14756771|IDA  go_function carbohydrate kinase activity|GO:0019200||ISS  product NHO1 (nonhost resistance to P. s. phaseolicola 1); carbohydrate kinase/ glycerol kinase  note nonhost resistance to P. s. phaseolicola 1 (NHO1); FUNCTIONS IN: glycerol kinase activity, carbohydrate kinase activity; INVOLVED IN: in 6 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate kinase, FGGY, conserved site (InterPro:IPR018483), Glycerol kinase (InterPro:IPR005999), Carbohydrate kinase, FGGY (InterPro:IPR000577), Carbohydrate kinase, FGGY, N-terminal (InterPro:IPR018484), Carbohydrate kinase, FGGY, C-terminal (InterPro:IPR018485); Has 9639 Blast hits to 9630 proteins in 1340 species: Archae - 80; Bacteria - 5702; Metazoa - 479; Fungi - 123; Plants - 50; Viruses - 0; Other Eukaryotes - 3205 (source: NCBI BLink).  protein_id AT1G80460.2p  transcript_id AT1G80460.2  protein_id AT1G80460.2p  transcript_id AT1G80460.2  
At1g80470	chr1:030256185	0.0	W/30256185-30256217,30256342-30257265,30257343-30257489,30257575-30257916	AT1G80470.1  CDS  gene_syn T21F11.20, T21F11_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G16930.1); Has 1270 Blast hits to 1243 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1270; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G80470.1p  transcript_id AT1G80470.1  protein_id AT1G80470.1p  transcript_id AT1G80470.1  
At1g80480	chr1:030260265	0.0	C/30260265-30260570,30260089-30260154,30259831-30260011,30259547-30259743,30259230-30259280,30259028-30259119,30258832-30258941,30258620-30258708,30258272-30258514	AT1G80480.1  CDS  gene_syn PLASTID TRANSCRIPTIONALLY ACTIVE17, PTAC17, T21F11.27, T21F11_27  gene PTAC17  go_component nucleoid|GO:0009295|16326926|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component plastid chromosome|GO:0009508|16326926|IDA  product PTAC17 (PLASTID TRANSCRIPTIONALLY ACTIVE17)  note PLASTID TRANSCRIPTIONALLY ACTIVE17 (PTAC17); LOCATED IN: plastid chromosome, chloroplast stroma, chloroplast, nucleoid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12) biosynthesis CobW-like (InterPro:IPR003495), Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal (InterPro:IPR011629); BEST Arabidopsis thaliana protein match is: PRLI-interacting factor L, putative (TAIR:AT1G15730.1); Has 18597 Blast hits to 10859 proteins in 1179 species: Archae - 146; Bacteria - 6676; Metazoa - 2747; Fungi - 687; Plants - 516; Viruses - 15; Other Eukaryotes - 7810 (source: NCBI BLink).  protein_id AT1G80480.1p  transcript_id AT1G80480.1  protein_id AT1G80480.1p  transcript_id AT1G80480.1  
At1g80490	chr1:030266367	0.0	C/30266367-30266446,30266115-30266294,30265760-30266032,30265490-30265667,30265249-30265372,30265000-30265106,30264717-30264888,30264511-30264620,30264355-30264424,30264211-30264284,30264037-30264132,30263844-30263939,30263618-30263745,30263279-30263513,30263058-30263198,30262899-30262961,30262665-30262811,30262486-30262596,30262225-30262404,30261910-30262134,30261639-30261827,30261386-30261552,30261094-30261307	AT1G80490.1  CDS  gene_syn T21F11.18, T21F11_18, TOPLESS-RELATED 1, TPR1  gene TPR1  go_component cytosol|GO:0005829|18433157|IDA  go_process primary shoot apical meristem specification|GO:0010072|16763149|IGI  product TPR1 (TOPLESS-RELATED 1)  note TOPLESS-RELATED 1 (TPR1); INVOLVED IN: primary shoot apical meristem specification; LOCATED IN: cytosol; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594); BEST Arabidopsis thaliana protein match is: TPL (TOPLESS); protein binding / protein homodimerization/ transcription repressor (TAIR:AT1G15750.4); Has 16626 Blast hits to 9754 proteins in 445 species: Archae - 36; Bacteria - 3294; Metazoa - 6536; Fungi - 3201; Plants - 1196; Viruses - 15; Other Eukaryotes - 2348 (source: NCBI BLink).  protein_id AT1G80490.1p  transcript_id AT1G80490.1  protein_id AT1G80490.1p  transcript_id AT1G80490.1  
At1g80490	chr1:030266367	0.0	C/30266367-30266446,30266115-30266294,30265760-30266032,30265490-30265667,30265249-30265372,30265000-30265109,30264717-30264888,30264511-30264620,30264355-30264424,30264211-30264284,30264037-30264132,30263844-30263939,30263618-30263745,30263279-30263513,30263058-30263198,30262899-30262961,30262665-30262811,30262486-30262596,30262225-30262404,30261910-30262134,30261639-30261827,30261386-30261552,30261094-30261307	AT1G80490.2  CDS  gene_syn T21F11.18, T21F11_18, TOPLESS-RELATED 1, TPR1  gene TPR1  go_component cytosol|GO:0005829|18433157|IDA  go_process primary shoot apical meristem specification|GO:0010072|16763149|IGI  product TPR1 (TOPLESS-RELATED 1)  note TOPLESS-RELATED 1 (TPR1); INVOLVED IN: primary shoot apical meristem specification; LOCATED IN: cytosol; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594); BEST Arabidopsis thaliana protein match is: TPL (TOPLESS); protein binding / protein homodimerization/ transcription repressor (TAIR:AT1G15750.4); Has 16566 Blast hits to 9728 proteins in 440 species: Archae - 36; Bacteria - 3282; Metazoa - 6558; Fungi - 3151; Plants - 1191; Viruses - 5; Other Eukaryotes - 2343 (source: NCBI BLink).  protein_id AT1G80490.2p  transcript_id AT1G80490.2  protein_id AT1G80490.2p  transcript_id AT1G80490.2  
At1g80500	chr1:030271195	0.0	W/30271195-30271275,30271807-30271892,30271964-30272025,30272169-30272254,30272339-30272431	AT1G80500.1  CDS  gene_syn T21F11.17, T21F11_17  go_component intracellular|GO:0005622||IEA  go_process transport|GO:0006810||IEA  go_process ER to Golgi vesicle-mediated transport|GO:0006888||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, ER to Golgi vesicle-mediated transport; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sedlin (InterPro:IPR006722), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20930.1); Has 437 Blast hits to 435 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 248; Fungi - 75; Plants - 53; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT1G80500.1p  transcript_id AT1G80500.1  protein_id AT1G80500.1p  transcript_id AT1G80500.1  
At1g80510	chr1:030273100	0.0	W/30273100-30274569	AT1G80510.1  CDS  gene_syn T21F11.16, T21F11_16  function Encodes a close relative of the amino acid transporter ANT1 (AT3G11900).  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product amino acid transporter family protein  note amino acid transporter family protein; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid transporter family protein (TAIR:AT3G30390.2); Has 3234 Blast hits to 3162 proteins in 221 species: Archae - 6; Bacteria - 134; Metazoa - 1425; Fungi - 449; Plants - 487; Viruses - 8; Other Eukaryotes - 725 (source: NCBI BLink).  protein_id AT1G80510.1p  transcript_id AT1G80510.1  protein_id AT1G80510.1p  transcript_id AT1G80510.1  
At1g80520	chr1:030276481	0.0	W/30276481-30277059	AT1G80520.1  CDS  gene_syn T21F11.15, T21F11_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Sterile alpha motif homology (InterPro:IPR010993); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15760.1); Has 30 Blast hits to 30 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G80520.1p  transcript_id AT1G80520.1  protein_id AT1G80520.1p  transcript_id AT1G80520.1  
At1g80530	chr1:030279918	0.0	C/30279918-30280247,30278776-30279665,30278224-30278689	AT1G80530.1  CDS  gene_syn T21F11.14, T21F11_14  go_component nucleus|GO:0005634|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product nodulin family protein  note nodulin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nodulin family protein (TAIR:AT2G16660.1); Has 1371 Blast hits to 1343 proteins in 395 species: Archae - 7; Bacteria - 668; Metazoa - 19; Fungi - 115; Plants - 316; Viruses - 0; Other Eukaryotes - 246 (source: NCBI BLink).  protein_id AT1G80530.1p  transcript_id AT1G80530.1  protein_id AT1G80530.1p  transcript_id AT1G80530.1  
At1g80540	chr1:030284111	0.0	C/30284111-30284258,30283859-30283998,30283294-30283481,30282921-30283211,30282764-30282822,30282634-30282670,30282479-30282550,30282072-30282396,30281638-30281994	AT1G80540.1  CDS  gene_syn T21F11.13, T21F11_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G12400.1); Has 77 Blast hits to 70 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G80540.1p  transcript_id AT1G80540.1  protein_id AT1G80540.1p  transcript_id AT1G80540.1  
At1g80550	chr1:030285358	0.0	C/30285358-30286704	AT1G80550.1  CDS  gene_syn T21F11.12, T21F11_12  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G15010.1); Has 13165 Blast hits to 4764 proteins in 142 species: Archae - 4; Bacteria - 8; Metazoa - 159; Fungi - 112; Plants - 12399; Viruses - 0; Other Eukaryotes - 483 (source: NCBI BLink).  protein_id AT1G80550.1p  transcript_id AT1G80550.1  protein_id AT1G80550.1p  transcript_id AT1G80550.1  
At1g80555	chr1:030287006	0.0	W/30287006-30287216,30287289-30287470	AT1G80555.1  CDS  go_component cytoplasm|GO:0005737||IEA  go_component chloroplast|GO:0009507||IEA  go_process metabolic process|GO:0008152||IEA  go_process leucine biosynthetic process|GO:0009098||IEA  go_function 3-isopropylmalate dehydrogenase activity|GO:0003862||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  product 3-isopropylmalate dehydrogenase/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor  note 3-isopropylmalate dehydrogenase/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor; FUNCTIONS IN: 3-isopropylmalate dehydrogenase activity, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; INVOLVED IN: leucine biosynthetic process, metabolic process; LOCATED IN: chloroplast, cytoplasm; CONTAINS InterPro DOMAIN/s: 3-isopropylmalate dehydrogenase (InterPro:IPR004429), Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804); BEST Arabidopsis thaliana protein match is: 3-isopropylmalate dehydrogenase, chloroplast, putative (TAIR:AT5G14200.3); Has 5048 Blast hits to 5048 proteins in 1243 species: Archae - 126; Bacteria - 2678; Metazoa - 2; Fungi - 315; Plants - 46; Viruses - 0; Other Eukaryotes - 1881 (source: NCBI BLink).  protein_id AT1G80555.1p  transcript_id AT1G80555.1  protein_id AT1G80555.1p  transcript_id AT1G80555.1  
At1g80560	chr1:030287833	0.0	W/30287833-30288049,30288249-30288378,30288488-30288599,30288678-30288753,30288844-30288932,30289025-30289111,30289202-30289318,30289409-30289516,30289598-30289651,30289758-30289910,30290052-30290126	AT1G80560.1  CDS  gene_syn T21F11.11, T21F11_11  function The AtIMD2 is one out of 3 genes encoding the enzyme 3-isopropylmalate dehydrogenase involved in leucine biosynthesis in Arabidopsis. Its subcellular location has been targeted to plastids.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component plastid|GO:0009536|15849421|ISS  go_process metabolic process|GO:0008152||ISS  go_process leucine biosynthetic process|GO:0009098|15849421|IGI  go_process leucine biosynthetic process|GO:0009098||ISS  go_function 3-isopropylmalate dehydrogenase activity|GO:0003862|15849421|IGI  go_function 3-isopropylmalate dehydrogenase activity|GO:0003862||ISS  product 3-isopropylmalate dehydrogenase, chloroplast, putative  note 3-isopropylmalate dehydrogenase, chloroplast, putative; FUNCTIONS IN: 3-isopropylmalate dehydrogenase activity; INVOLVED IN: leucine biosynthetic process, metabolic process; LOCATED IN: chloroplast, chloroplast stroma, plastid, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 3-isopropylmalate dehydrogenase (InterPro:IPR004429), Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804); BEST Arabidopsis thaliana protein match is: 3-isopropylmalate dehydrogenase, chloroplast, putative (TAIR:AT1G31180.1); Has 11245 Blast hits to 11244 proteins in 1563 species: Archae - 249; Bacteria - 4868; Metazoa - 490; Fungi - 587; Plants - 155; Viruses - 0; Other Eukaryotes - 4896 (source: NCBI BLink).  protein_id AT1G80560.1p  transcript_id AT1G80560.1  protein_id AT1G80560.1p  transcript_id AT1G80560.1  
At1g80570	chr1:030290661	0.0	W/30290661-30290691,30290820-30292231	AT1G80570.2  CDS  gene_syn T21F11.10, T21F11_10  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product F-box family protein (FBL14)  note F-box family protein (FBL14); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: F-box family protein (FBL3) (TAIR:AT5G01720.1); Has 3926 Blast hits to 1921 proteins in 161 species: Archae - 0; Bacteria - 279; Metazoa - 1944; Fungi - 309; Plants - 1047; Viruses - 3; Other Eukaryotes - 344 (source: NCBI BLink).  protein_id AT1G80570.2p  transcript_id AT1G80570.2  protein_id AT1G80570.2p  transcript_id AT1G80570.2  
At1g80570	chr1:030290828	0.0	W/30290828-30292231	AT1G80570.1  CDS  gene_syn T21F11.10, T21F11_10  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product F-box family protein (FBL14)  note F-box family protein (FBL14); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (FBL3) (TAIR:AT5G01720.1); Has 3944 Blast hits to 1920 proteins in 161 species: Archae - 0; Bacteria - 281; Metazoa - 1965; Fungi - 307; Plants - 1041; Viruses - 3; Other Eukaryotes - 347 (source: NCBI BLink).  protein_id AT1G80570.1p  transcript_id AT1G80570.1  protein_id AT1G80570.1p  transcript_id AT1G80570.1  
At1g80570	chr1:030290828	0.0	W/30290828-30292231	AT1G80570.3  CDS  gene_syn T21F11.10, T21F11_10  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product F-box family protein (FBL14)  note F-box family protein (FBL14); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (FBL3) (TAIR:AT5G01720.1); Has 3944 Blast hits to 1920 proteins in 161 species: Archae - 0; Bacteria - 281; Metazoa - 1965; Fungi - 307; Plants - 1041; Viruses - 3; Other Eukaryotes - 347 (source: NCBI BLink).  protein_id AT1G80570.3p  transcript_id AT1G80570.3  protein_id AT1G80570.3p  transcript_id AT1G80570.3  
At1g80580	chr1:030293558	0.0	W/30293558-30294328	AT1G80580.1  CDS  gene_syn T21F11.9, T21F11_9  function encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9687012|TAS  go_function transcription factor activity|GO:0003700||ISS  product ethylene-responsive element-binding family protein  note ethylene-responsive element-binding family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: ethylene mediated signaling pathway, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: PUCHI; DNA binding / transcription factor (TAIR:AT5G18560.1); Has 3685 Blast hits to 3527 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3666; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT1G80580.1p  transcript_id AT1G80580.1  protein_id AT1G80580.1p  transcript_id AT1G80580.1  
At1g80590	chr1:030296954	0.0	C/30296954-30297156,30296718-30296828,30296210-30296603	AT1G80590.1  CDS  gene_syn ATWRKY66, T21F11.8, T21F11_8, WRKY DNA-BINDING PROTEIN 66, WRKY66  gene WRKY66  function member of WRKY Transcription Factor; Group III  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY66; transcription factor  note WRKY66; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY63; transcription factor (TAIR:AT1G66600.1); Has 1879 Blast hits to 1616 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1871; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G80590.1p  transcript_id AT1G80590.1  protein_id AT1G80590.1p  transcript_id AT1G80590.1  
At1g80600	chr1:030300100	0.0	C/30300100-30300513,30299292-30299726,30298675-30299199	AT1G80600.1  CDS  gene_syn HOPW1-1-INTERACTING 1, T21F11.7, T21F11_7, WIN1  gene WIN1  function Encodes HopW1-1-Interacting protein 1 (WIN1). Interacts with the P. syringae effector HopW1-1. WIN1 is a putative acetylornithine transaminase. Modulates plant defenses against bacteria. Three WIN proteins are identified so far (WIN1: AT1G80600; WIN2: AT4G31750; WIN3: AT5G13320).  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_function catalytic activity|GO:0003824||IEA  go_function transaminase activity|GO:0008483||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_process defense response to bacterium|GO:0042742|18266921|IMP  go_function N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity|GO:0003992||ISS  product WIN1 (HOPW1-1-INTERACTING 1); N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase/ catalytic/ pyridoxal phosphate binding / transaminase  note HOPW1-1-INTERACTING 1 (WIN1); FUNCTIONS IN: N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity, pyridoxal phosphate binding, transaminase activity, catalytic activity; INVOLVED IN: defense response to bacterium; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Acetylornithine and succinylornithine aminotransferase (InterPro:IPR004636), Aminotransferase class-III (InterPro:IPR005814), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: delta-OAT; ornithine-oxo-acid transaminase (TAIR:AT5G46180.1); Has 24930 Blast hits to 24917 proteins in 1637 species: Archae - 420; Bacteria - 12588; Metazoa - 552; Fungi - 591; Plants - 236; Viruses - 14; Other Eukaryotes - 10529 (source: NCBI BLink).  protein_id AT1G80600.1p  transcript_id AT1G80600.1  protein_id AT1G80600.1p  transcript_id AT1G80600.1  
At1g80610	chr1:030303643	0.0	C/30303643-30303960,30301915-30301983,30301603-30301665,30301442-30301510,30301204-30301320	AT1G80610.1  CDS  gene_syn T21F11.6, T21F11_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15800.1); Has 41 Blast hits to 39 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 27; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G80610.1p  transcript_id AT1G80610.1  protein_id AT1G80610.1p  transcript_id AT1G80610.1  
At1g80620	chr1:030305404	0.0	W/30305404-30306256,30306457-30306539,30306629-30306740,30306901-30306953,30307039-30307182	AT1G80620.1  CDS  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_component chloroplast|GO:0009507||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component small ribosomal subunit|GO:0015935||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein S15 family protein  note ribosomal protein S15 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: small ribosomal subunit, ribosome, intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S15 (InterPro:IPR000589), Ribosomal protein S15, bacterial-type (InterPro:IPR005290), S15/NS1, RNA-binding (InterPro:IPR009068); BEST Arabidopsis thaliana protein match is: ribosomal protein S15 family protein (TAIR:AT1G15810.1); Has 5440 Blast hits to 5440 proteins in 1548 species: Archae - 0; Bacteria - 3063; Metazoa - 73; Fungi - 72; Plants - 237; Viruses - 0; Other Eukaryotes - 1995 (source: NCBI BLink).  protein_id AT1G80620.1p  transcript_id AT1G80620.1  protein_id AT1G80620.1p  transcript_id AT1G80620.1  
At1g80630	chr1:030308879	0.0	C/30308879-30310615	AT1G80630.1  CDS  gene_syn T21F11.4, T21F11_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23340.1); Has 4463 Blast hits to 1962 proteins in 153 species: Archae - 0; Bacteria - 128; Metazoa - 2525; Fungi - 490; Plants - 947; Viruses - 0; Other Eukaryotes - 373 (source: NCBI BLink).  protein_id AT1G80630.1p  transcript_id AT1G80630.1  protein_id AT1G80630.1p  transcript_id AT1G80630.1  
At1g80640	chr1:030311979	0.0	W/30311979-30312141,30312381-30312551,30312632-30312873,30312969-30313101,30313179-30313242,30313345-30313441,30313546-30313627,30313718-30313833,30313913-30314002,30314113-30314238	AT1G80640.1  CDS  gene_syn T21F11.3, T21F11_3  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT2G25220.1); Has 67418 Blast hits to 66747 proteins in 2302 species: Archae - 33; Bacteria - 5025; Metazoa - 29938; Fungi - 4695; Plants - 16859; Viruses - 272; Other Eukaryotes - 10596 (source: NCBI BLink).  protein_id AT1G80640.1p  transcript_id AT1G80640.1  protein_id AT1G80640.1p  transcript_id AT1G80640.1  
At1g80640	chr1:030311979	0.0	W/30311979-30312141,30312381-30312551,30312632-30312873,30312969-30313101,30313179-30313242,30313345-30313441,30313546-30313627,30313718-30313833,30313917-30313928	AT1G80640.2  CDS  gene_syn T21F11.3, T21F11_3  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT2G25220.1); Has 66530 Blast hits to 65928 proteins in 2290 species: Archae - 31; Bacteria - 4815; Metazoa - 29809; Fungi - 4619; Plants - 16542; Viruses - 272; Other Eukaryotes - 10442 (source: NCBI BLink).  protein_id AT1G80640.2p  transcript_id AT1G80640.2  protein_id AT1G80640.2p  transcript_id AT1G80640.2  
At1g80650	chr1:030314609	0.0	W/30314609-30314713,30314898-30315105,30315234-30315357,30315441-30315600	AT1G80650.1  CDS  gene_syn RNase three-like protein 1, RTL1, T21F11.2, T21F11_2  gene RTL1  go_component intracellular|GO:0005622||IEA  go_function RNA binding|GO:0003723||IEA  go_function double-stranded RNA binding|GO:0003725||IEA  go_process biological_process|GO:0008150||ND  go_function double-stranded RNA binding|GO:0003725||ISS  product RTL1 (RNase three-like protein 1); RNA binding / double-stranded RNA binding  note RNase three-like protein 1 (RTL1); FUNCTIONS IN: double-stranded RNA binding, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Double-stranded RNA binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: double-stranded RNA-binding domain (DsRBD)-containing protein (TAIR:AT4G00420.3); Has 55 Blast hits to 55 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G80650.1p  transcript_id AT1G80650.1  protein_id AT1G80650.1p  transcript_id AT1G80650.1  
At1g80660	chr1:030319892	0.0	C/30319892-30319948,30319698-30319817,30319516-30319614,30319311-30319448,30318357-30319241,30318175-30318279,30317772-30318081,30317180-30317694,30316929-30317102,30316672-30316854,30316409-30316590,30316227-30316323	AT1G80660.1  CDS  gene_syn AHA9, ARABIDOPSIS H(+)-ATPASE 9, F23A5.1, F23A5_1  gene AHA9  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|8180619|ISS  go_process proton transport|GO:0015992|8180619|ISS  go_function hydrogen-exporting ATPase activity, phosphorylative mechanism|GO:0008553|8180619|ISS  go_function hydrogen-exporting ATPase activity, phosphorylative mechanism|GO:0008553||ISS  product AHA9; hydrogen-exporting ATPase, phosphorylative mechanism  note AHA9; FUNCTIONS IN: hydrogen-exporting ATPase activity, phosphorylative mechanism; INVOLVED IN: proton transport; LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type, plasma-membrane proton-efflux (InterPro:IPR006534), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: AHA6 (Arabidopsis H(+)-ATPase 6); ATPase (TAIR:AT2G07560.1); Has 21110 Blast hits to 18570 proteins in 1823 species: Archae - 409; Bacteria - 11761; Metazoa - 3302; Fungi - 1547; Plants - 1077; Viruses - 3; Other Eukaryotes - 3011 (source: NCBI BLink).  protein_id AT1G80660.1p  transcript_id AT1G80660.1  protein_id AT1G80660.1p  transcript_id AT1G80660.1  
At1g80670	chr1:030323487	0.0	C/30323487-30323543,30322914-30323000,30322721-30322798,30322441-30322634,30322185-30322326,30321920-30322000,30321529-30321657,30321346-30321423,30321196-30321267,30320956-30321036,30320809-30320859	AT1G80670.1  CDS  gene_syn F23A5.2, F23A5_2  function This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|IPI  go_function nucleotide binding|GO:0000166||ISS  go_function protein binding|GO:0005515|18223036|IPI  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: protein binding, nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT1G15850.1); Has 21022 Blast hits to 11903 proteins in 476 species: Archae - 54; Bacteria - 4313; Metazoa - 8086; Fungi - 4052; Plants - 1677; Viruses - 0; Other Eukaryotes - 2840 (source: NCBI BLink).  protein_id AT1G80670.1p  transcript_id AT1G80670.1  protein_id AT1G80670.1p  transcript_id AT1G80670.1  
At1g80680	chr1:030324219	0.0	W/30324219-30324249,30324598-30327131,30327214-30327337,30327452-30327600,30327807-30327904,30328285-30328489	AT1G80680.1  CDS  gene_syn F23A5.3, F23A5_3, MODIFIER OF SNC1,3, MOS3, NUP96, PRE, PRECOCIOUS, SAR3, SUPPRESSOR OF AUXIN RESISTANCE 3  gene SAR3  function Mutant has early-flowering phenotype, encodes a putative nucleoporin. Required for the activation of downstream defense pathways by the snc1 mutation. Involved in basal resistance against bacterial pathogens.  go_component nucleus|GO:0005634|15772285|IDA  go_component nuclear membrane|GO:0031965|16751346|IDA  go_process mRNA export from nucleus|GO:0006406|16751346|IGI  go_process response to auxin stimulus|GO:0009733|16751346|IGI  go_process defense response signaling pathway, resistance gene-dependent|GO:0009870|15772285|IMP  go_process negative regulation of flower development|GO:0009910||NAS  go_process developmental process|GO:0032502|16751346|IGI  go_function porin activity|GO:0015288|15772285|ISS  product SAR3 (SUPPRESSOR OF AUXIN RESISTANCE 3); porin  note SUPPRESSOR OF AUXIN RESISTANCE 3 (SAR3); FUNCTIONS IN: porin activity; INVOLVED IN: response to auxin stimulus, defense response signaling pathway, resistance gene-dependent, mRNA export from nucleus, negative regulation of flower development, developmental process; LOCATED IN: nuclear membrane, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S59, nucleoporin (InterPro:IPR007230); BEST Arabidopsis thaliana protein match is: nucleoporin family protein (TAIR:AT1G10390.2); Has 519 Blast hits to 407 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 246; Fungi - 168; Plants - 48; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT1G80680.1p  transcript_id AT1G80680.1  protein_id AT1G80680.1p  transcript_id AT1G80680.1  
At1g80690	chr1:030330392	0.0	C/30330392-30330524,30329893-30330180,30329283-30329545	AT1G80690.1  CDS  gene_syn F23A5.4, F23A5_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25170.1); Has 554 Blast hits to 554 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 178; Fungi - 58; Plants - 183; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).  protein_id AT1G80690.1p  transcript_id AT1G80690.1  protein_id AT1G80690.1p  transcript_id AT1G80690.1  
At1g80700	chr1:030331978	0.0	W/30331978-30332219,30332602-30332651,30332746-30332798,30332934-30333233	AT1G80700.1  CDS  gene_syn F23A5.5, F23A5_5  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80980.1); Has 455 Blast hits to 319 proteins in 70 species: Archae - 2; Bacteria - 29; Metazoa - 94; Fungi - 38; Plants - 23; Viruses - 0; Other Eukaryotes - 269 (source: NCBI BLink).  protein_id AT1G80700.1p  transcript_id AT1G80700.1  protein_id AT1G80700.1p  transcript_id AT1G80700.1  
At1g80710	chr1:030334963	0.0	C/30334963-30335796,30334450-30334856,30333944-30334039,30333499-30333712	AT1G80710.1  CDS  gene_syn F23A5.6, F23A5_6  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: DDB2 (damaged DNA-binding 2); nucleic acid binding / nucleotide binding / zinc ion binding (TAIR:AT5G58760.1); Has 10423 Blast hits to 7377 proteins in 350 species: Archae - 44; Bacteria - 2096; Metazoa - 3947; Fungi - 1997; Plants - 873; Viruses - 0; Other Eukaryotes - 1466 (source: NCBI BLink).  protein_id AT1G80710.1p  transcript_id AT1G80710.1  protein_id AT1G80710.1p  transcript_id AT1G80710.1  
At1g80720	chr1:030336289	0.0	W/30336289-30336375,30336769-30337091,30337185-30337347	AT1G80720.1  CDS  gene_syn F23A5.7, F23A5_7  go_component mitochondrial matrix|GO:0005759||IEA  go_component mitochondrial matrix|GO:0005759||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial glycoprotein family protein / MAM33 family protein  note mitochondrial glycoprotein family protein / MAM33 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrial matrix; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial glycoprotein (InterPro:IPR003428); BEST Arabidopsis thaliana protein match is: mitochondrial glycoprotein family protein / MAM33 family protein (TAIR:AT1G15870.1); Has 258 Blast hits to 258 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 81; Plants - 118; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT1G80720.1p  transcript_id AT1G80720.1  protein_id AT1G80720.1p  transcript_id AT1G80720.1  
At1g80730	chr1:030339493	0.0	C/30339493-30340179	AT1G80730.1  CDS  gene_syn ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, ATZFP1, F23A5.8, F23A5_8, ZFP1, ZINC-FINGER PROTEIN 1  gene ZFP1  function Encodes a zinc finger protein and is expressed at high levels in the shoot apex, including the apical meristem, developing leaves and the developing vascular system. expression induced three days post germination. T-DNA insertion mutant has a dominant phenotype in leaf initiation.  go_component intracellular|GO:0005622||IEA  go_process photomorphogenesis|GO:0009640|10794528|IEP  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product ZFP1 (ZINC-FINGER PROTEIN 1); nucleic acid binding / transcription factor/ zinc ion binding  note ZINC-FINGER PROTEIN 1 (ZFP1); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: photomorphogenesis; LOCATED IN: intracellular; EXPRESSED IN: petal, inflorescence meristem, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT5G10970.1); Has 396 Blast hits to 394 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 393; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G80730.1p  transcript_id AT1G80730.1  protein_id AT1G80730.1p  transcript_id AT1G80730.1  
At1g80740	chr1:030342394	0.0	W/30342394-30342557,30342630-30342735,30342959-30343066,30343145-30343267,30343357-30343456,30343844-30344004,30344086-30344151,30344243-30344503,30344608-30344666,30344735-30344801,30344884-30345213,30345302-30345370,30345455-30345541,30345623-30345713,30345784-30345896,30345980-30346078,30346168-30346211,30346311-30346380,30346471-30346574,30346678-30346831	AT1G80740.1  CDS  gene_syn CHROMOMETHYLASE 1, CMT1, DMT4, DNA METHYLTRANSFERASE 4, F23A5.9, F23A5_9  gene CMT1  function ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation.  go_component chromatin|GO:0000785||IEA  go_component nucleus|GO:0005634||IEA  go_function DNA binding|GO:0003677||IEA  go_function chromatin binding|GO:0003682||IEA  go_process DNA methylation|GO:0006306||ISS  go_process DNA mediated transformation|GO:0009294|17827277|IMP  go_function DNA binding|GO:0003677||ISS  product CMT1 (CHROMOMETHYLASE 1); DNA binding / chromatin binding  note CHROMOMETHYLASE 1 (CMT1); FUNCTIONS IN: chromatin binding, DNA binding; INVOLVED IN: DNA mediated transformation, DNA methylation; LOCATED IN: chromatin, nucleus; CONTAINS InterPro DOMAIN/s: Chromo domain subgroup (InterPro:IPR017984), C-5 cytosine-specific DNA methylase (InterPro:IPR001525), Chromo domain-like (InterPro:IPR016197), Bromo adjacent region (InterPro:IPR001025), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: CMT3 (chromomethylase 3); DNA (cytosine-5-)-methyltransferase (TAIR:AT1G69770.1); Has 2391 Blast hits to 2180 proteins in 530 species: Archae - 106; Bacteria - 1070; Metazoa - 257; Fungi - 118; Plants - 224; Viruses - 19; Other Eukaryotes - 597 (source: NCBI BLink).  protein_id AT1G80740.1p  transcript_id AT1G80740.1  protein_id AT1G80740.1p  transcript_id AT1G80740.1  
At1g80745	chr1:030347714	0.0	W/30347714-30347797,30347876-30347926,30348023-30348074,30348200-30348321	AT1G80745.1  CDS  product unknown protein  note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15420.1); Has 17 Blast hits to 17 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G80745.1p  transcript_id AT1G80745.1  protein_id AT1G80745.1p  transcript_id AT1G80745.1  
At1g80750	chr1:030349052	0.0	W/30349052-30349237,30349589-30349686,30349784-30349921,30350026-30350128,30350216-30350434	AT1G80750.1  CDS  gene_syn F23A5.10, F23A5_10  go_component nucleolus|GO:0005730|15496452|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_function transcription regulator activity|GO:0030528||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L7 (RPL7A)  note 60S ribosomal protein L7 (RPL7A); FUNCTIONS IN: structural constituent of ribosome, transcription regulator activity; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, nucleolus, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30, N-terminal (InterPro:IPR012988), Ribosomal protein L30p/L7e, N-terminal (InterPro:IPR000517), Ribosomal protein L7, eukaryotic (InterPro:IPR005998), Ribosomal protein L30, ferredoxin-like fold domain (InterPro:IPR016082); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L7 (RPL7D) (TAIR:AT3G13580.3); Has 856 Blast hits to 856 proteins in 248 species: Archae - 76; Bacteria - 0; Metazoa - 354; Fungi - 146; Plants - 114; Viruses - 0; Other Eukaryotes - 166 (source: NCBI BLink).  protein_id AT1G80750.1p  transcript_id AT1G80750.1  protein_id AT1G80750.1p  transcript_id AT1G80750.1  
At1g80760	chr1:030351773	0.0	C/30351773-30352015,30351452-30351676,30351051-30351245,30350912-30350973,30350640-30350832	AT1G80760.1  CDS  gene_syn ATNIP6, F23A5.11, F23A5_11, NIP6, NIP6;1, NLM7, NOD26-LIKE INTRINSIC PROTEIN 6;1  gene NIP6;1  function Encodes a protein with boron transporter activity. It helps to preferentially direct boron to young developing tissues in the shoot, such as immature leaves, under low boron conditions. This boron channel appears to be impermeable to water, unlike the closely related NIP5;1 boron transporter. This protein also allows the transport of glycerol, urea, and formimide but not larger uncharged solutes such as arabitol and sucrose when it is expressed heterologously.  go_component plasma membrane|GO:0005886|18952773|IDA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_process boron transport|GO:0046713|18952773|IMP  go_process cellular response to boron levels|GO:0080029|18952773|IEP  go_function water transporter activity|GO:0005372|18952773|IDA  go_function glycerol transmembrane transporter activity|GO:0015168|16363796|IDA  go_function urea transmembrane transporter activity|GO:0015204|16363796|IDA  go_function water channel activity|GO:0015250||ISS  go_function boron transporter activity|GO:0046715|18952773|IDA  product NIP6;1 (NOD26-LIKE INTRINSIC PROTEIN 6;1); boron transporter/ glycerol transmembrane transporter/ urea transmembrane transporter/ water channel/ water transporter  note NOD26-LIKE INTRINSIC PROTEIN 6;1 (NIP6;1); FUNCTIONS IN: boron transporter activity, water channel activity, water transporter activity, urea transmembrane transporter activity, glycerol transmembrane transporter activity; INVOLVED IN: boron transport, cellular response to boron levels, transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: NIP5;1; arsenite transmembrane transporter/ boron transporter/ water channel (TAIR:AT4G10380.1); Has 6682 Blast hits to 6648 proteins in 1239 species: Archae - 75; Bacteria - 2668; Metazoa - 1156; Fungi - 284; Plants - 1380; Viruses - 2; Other Eukaryotes - 1117 (source: NCBI BLink).  protein_id AT1G80760.1p  transcript_id AT1G80760.1  protein_id AT1G80760.1p  transcript_id AT1G80760.1  
At1g80770	chr1:030355266	0.0	W/30355266-30355353,30355424-30355569,30355663-30355786,30355875-30355939,30356030-30356143,30356217-30356291,30356479-30356589,30356669-30356782,30356861-30356932,30357011-30357047,30357144-30357256,30357406-30357612,30357697-30357786	AT1G80770.1  CDS  gene_syn F23A5.12, F23A5_12, PDE318, pigment defective 318  gene PDE318  go_function GTP binding|GO:0005525||IEA  product PDE318 (pigment defective 318); GTP binding  note pigment defective 318 (PDE318); FUNCTIONS IN: GTP binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073), Nucleolar GTP-binding 1 (InterPro:IPR010674); BEST Arabidopsis thaliana protein match is: GTP-binding protein-related (TAIR:AT1G50920.1); Has 6754 Blast hits to 6749 proteins in 1535 species: Archae - 192; Bacteria - 3675; Metazoa - 331; Fungi - 218; Plants - 119; Viruses - 0; Other Eukaryotes - 2219 (source: NCBI BLink).  protein_id AT1G80770.1p  transcript_id AT1G80770.1  protein_id AT1G80770.1p  transcript_id AT1G80770.1  
At1g80780	chr1:030358517	0.0	W/30358517-30359341	AT1G80780.1  CDS  gene_syn F23A5.13, F23A5_13  go_component nucleus|GO:0005634||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process RNA modification|GO:0009451||ISS  go_function ribonuclease activity|GO:0004540||ISS  product CCR4-NOT transcription complex protein, putative  note CCR4-NOT transcription complex protein, putative; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: CCR4-NOT transcription complex protein, putative (TAIR:AT2G32070.1); Has 629 Blast hits to 621 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 218; Fungi - 94; Plants - 219; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT1G80780.1p  transcript_id AT1G80780.1  protein_id AT1G80780.1p  transcript_id AT1G80780.1  
At1g80780	chr1:030358517	0.0	W/30358517-30359341	AT1G80780.2  CDS  gene_syn F23A5.13, F23A5_13  go_component nucleus|GO:0005634||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process RNA modification|GO:0009451||ISS  go_function ribonuclease activity|GO:0004540||ISS  product CCR4-NOT transcription complex protein, putative  note CCR4-NOT transcription complex protein, putative; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: CCR4-NOT transcription complex protein, putative (TAIR:AT2G32070.1); Has 629 Blast hits to 621 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 218; Fungi - 94; Plants - 219; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT1G80780.2p  transcript_id AT1G80780.2  protein_id AT1G80780.2p  transcript_id AT1G80780.2  
At1g80790	chr1:030360280	0.0	W/30360280-30361180,30361266-30361447,30361531-30361620,30361758-30362042,30362315-30362530,30362626-30362856	AT1G80790.1  CDS  gene_syn F23A5.14, F23A5_14  go_component cellular_component|GO:0005575||ND  product XH/XS domain-containing protein / XS zinc finger domain-containing protein  note XH/XS domain-containing protein / XS zinc finger domain-containing protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Region of unknown function XS (InterPro:IPR005380), Region of unknown function XH (InterPro:IPR005379), Region of unknown function, putative Zinc finger, XS and XH (InterPro:IPR005381); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein / XS zinc finger domain-containing protein (TAIR:AT1G15910.1); Has 67806 Blast hits to 38036 proteins in 1354 species: Archae - 728; Bacteria - 6143; Metazoa - 32571; Fungi - 3879; Plants - 1839; Viruses - 312; Other Eukaryotes - 22334 (source: NCBI BLink).  protein_id AT1G80790.1p  transcript_id AT1G80790.1  protein_id AT1G80790.1p  transcript_id AT1G80790.1  
At1g80800	chr1:030364013	0.0	W/30364013-30364310	AT1G80800.1  pseudogenic_transcript  pseudo  gene_syn F23A5.15, F23A5_15  note pseudogene, 40S ribosomal protein S12 (RPS12B), similar to ribosomal protein S12 GB:AAD39838 GI:5106775 from (Hordeum vulgare); blastp match of 65% identity and 4.7e-12 P-value to GP|23617253|dbj|BAC20920.1||AP005764 putative 40S ribosomal protein S12 {Oryza sativa (japonica cultivar-group)}  
At1g80810	chr1:030365575	0.0	W/30365575-30365730,30365821-30366002,30366101-30366227,30366310-30366507,30366589-30367314,30367407-30367508,30367605-30367669,30367754-30367805,30367912-30367998,30368072-30368118,30368220-30368294,30368391-30368898	AT1G80810.2  CDS  gene_syn F23A5.16, F23A5_16  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT1G15940.1); Has 94734 Blast hits to 46498 proteins in 1817 species: Archae - 344; Bacteria - 6188; Metazoa - 41360; Fungi - 11679; Plants - 4240; Viruses - 1034; Other Eukaryotes - 29889 (source: NCBI BLink).  protein_id AT1G80810.2p  transcript_id AT1G80810.2  protein_id AT1G80810.2p  transcript_id AT1G80810.2  
At1g80810	chr1:030365575	0.0	W/30365575-30365730,30365821-30366002,30366101-30366227,30366310-30366507,30366589-30367314,30367407-30367508,30367605-30367669,30367754-30367805,30367912-30367998,30368075-30368118,30368220-30368294,30368391-30368898	AT1G80810.1  CDS  gene_syn F23A5.16, F23A5_16  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT1G15940.1); Has 94559 Blast hits to 46368 proteins in 1794 species: Archae - 351; Bacteria - 6077; Metazoa - 41328; Fungi - 11694; Plants - 4199; Viruses - 1054; Other Eukaryotes - 29856 (source: NCBI BLink).  protein_id AT1G80810.1p  transcript_id AT1G80810.1  protein_id AT1G80810.1p  transcript_id AT1G80810.1  
At1g80820	chr1:030370646	0.0	W/30370646-30370918,30371012-30371197,30371332-30371684,30372274-30372460	AT1G80820.1  CDS  gene_syn ATCCR2, CCR2, CINNAMOYL COA REDUCTASE, F23A5.17, F23A5_17  gene CCR2  function Encodes an cinnamoyl CoA reductase isoform. Involved in lignin biosynthesis.  go_component cellular_component|GO:0005575||ND  go_process response to cold|GO:0009409|7513083|IEP  go_process lignin biosynthetic process|GO:0009809||NAS  go_function cinnamoyl-CoA reductase activity|GO:0016621|11430991|IDA  product CCR2 (CINNAMOYL COA REDUCTASE); cinnamoyl-CoA reductase  note CINNAMOYL COA REDUCTASE (CCR2); FUNCTIONS IN: cinnamoyl-CoA reductase activity; INVOLVED IN: lignin biosynthetic process, response to cold; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: CCR1 (CINNAMOYL COA REDUCTASE 1); cinnamoyl-CoA reductase (TAIR:AT1G15950.1); Has 7320 Blast hits to 7308 proteins in 1091 species: Archae - 87; Bacteria - 2666; Metazoa - 364; Fungi - 585; Plants - 1408; Viruses - 10; Other Eukaryotes - 2200 (source: NCBI BLink).  protein_id AT1G80820.1p  transcript_id AT1G80820.1  protein_id AT1G80820.1p  transcript_id AT1G80820.1  
At1g80830	chr1:030375528	0.0	C/30375528-30375644,30375207-30375285,30375080-30375120,30374914-30374992,30374744-30374848,30374534-30374643,30374274-30374455,30373957-30374200,30373643-30373879,30373461-30373556,30373066-30373374	AT1G80830.1  CDS  gene_syn ATNRAMP1, F23A5.18, F23A5_18, NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 1, NRAMP1, PMIT1  gene NRAMP1  function Thought to be involved in iron homeostasis. Induced in leaves in response to iron deficiency. Transgenic plants accumulate toxic levels of iron. Gene complements yeast iron uptake mutants.  go_component membrane|GO:0016020||IEA  go_process manganese ion transport|GO:0006828|11500563|TAS  go_process cellular metal ion homeostasis|GO:0006875|11500563|NAS  go_process cadmium ion transport|GO:0015691|11500563|TAS  go_process lead ion transport|GO:0015692|11500563|TAS  go_process metal ion transport|GO:0030001|11500563|TAS  go_function manganese ion transmembrane transporter activity|GO:0005384|11500563|TAS  go_function inorganic anion transmembrane transporter activity|GO:0015103||ISS  go_function metal ion transmembrane transporter activity|GO:0046873|11500563|TAS  product NRAMP1 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 1); inorganic anion transmembrane transporter/ manganese ion transmembrane transporter/ metal ion transmembrane transporter  note NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 1 (NRAMP1); FUNCTIONS IN: manganese ion transmembrane transporter activity, inorganic anion transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: manganese ion transport, cadmium ion transport, cellular metal ion homeostasis, lead ion transport, metal ion transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Natural resistance-associated macrophage protein (InterPro:IPR001046); BEST Arabidopsis thaliana protein match is: NRAMP6; inorganic anion transmembrane transporter/ metal ion transmembrane transporter (TAIR:AT1G15960.1); Has 3074 Blast hits to 3040 proteins in 863 species: Archae - 50; Bacteria - 2063; Metazoa - 300; Fungi - 172; Plants - 197; Viruses - 0; Other Eukaryotes - 292 (source: NCBI BLink).  protein_id AT1G80830.1p  transcript_id AT1G80830.1  protein_id AT1G80830.1p  transcript_id AT1G80830.1  
At1g80831	chr1:030376371	0.0	W/30376371-30376481	AT1G80831.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G80831.1p  transcript_id AT1G80831.1  protein_id AT1G80831.1p  transcript_id AT1G80831.1  
At1g80840	chr1:030383834	0.0	W/30383834-30383920,30384331-30384672,30384768-30384884,30384994-30385356	AT1G80840.1  CDS  gene_syn ATWRKY40, F23A5.19, F23A5_19, WRKY DNA-BINDING PROTEIN 40, WRKY40  gene WRKY40  function Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Coexpression with WRKY18 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.  go_component nucleus|GO:0005634|16603654|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to wounding|GO:0009611|17953483|IEP  go_process response to salicylic acid stimulus|GO:0009751|12602888|IEP  go_process response to chitin|GO:0010200|17722694|IEP  go_process regulation of defense response|GO:0031347|12068113|IMP  go_process defense response to bacterium|GO:0042742|12602888|IEP  go_process regulation of defense response to virus by host|GO:0050691|17185563|IGI  go_process defense response to fungus|GO:0050832|16603654|IEP  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|16603654|IDA  go_function transcription factor activity|GO:0003700||ISS  product WRKY40; transcription factor  note WRKY40; FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 8 processes; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY18; transcription factor (TAIR:AT4G31800.2); Has 1973 Blast hits to 1689 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1962; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G80840.1p  transcript_id AT1G80840.1  protein_id AT1G80840.1p  transcript_id AT1G80840.1  
At1g80850	chr1:030386843	0.0	C/30386843-30387272,30386383-30386440,30386202-30386285,30385971-30386112,30385607-30385876	AT1G80850.1  CDS  gene_syn F23A5.20, F23A5_20  go_process DNA repair|GO:0006281||IEA  go_process base-excision repair|GO:0006284||IEA  go_function catalytic activity|GO:0003824||IEA  go_function DNA-3-methyladenine glycosylase I activity|GO:0008725||IEA  go_component cellular_component|GO:0005575||ND  go_process DNA repair|GO:0006281||ISS  go_function DNA-3-methyladenine glycosylase I activity|GO:0008725||ISS  product methyladenine glycosylase family protein  note methyladenine glycosylase family protein; FUNCTIONS IN: DNA-3-methyladenine glycosylase I activity, catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Methyladenine glycosylase (InterPro:IPR005019); BEST Arabidopsis thaliana protein match is: methyladenine glycosylase family protein (TAIR:AT1G15970.1); Has 1956 Blast hits to 1956 proteins in 800 species: Archae - 7; Bacteria - 1545; Metazoa - 4; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 317 (source: NCBI BLink).  protein_id AT1G80850.1p  transcript_id AT1G80850.1  protein_id AT1G80850.1p  transcript_id AT1G80850.1  
At1g80860	chr1:030389040	0.0	C/30389040-30389284,30388432-30388681	AT1G80860.1  CDS  gene_syn ARABIDOPSIS PHOSPHOLIPID N-METHYLTRANSFERASE, ATPLMT, F23A5.21, F23A5_21, PHOSPHOLIPID N-METHYLTRANSFERASE, PLMT  gene PLMT  function Encodes a single-copy phospholipid N-methyltransferase, involved in phosphatidylcholine biosynthesis. Has specific activity towards phosphatidylmonomethylethanolamine and phosphatidyldimethylethanolamine, but not phosphatidylethanolamine.  go_component microsome|GO:0005792|19366698|IDA  go_process phospholipid biosynthetic process|GO:0008654|19366698|IMP  go_function phosphatidyl-N-methylethanolamine N-methyltransferase activity|GO:0000773|19366698|IDA  go_function phosphatidyl-N-dimethylethanolamine N-methyltransferase activity|GO:0080101|19366698|IDA  product PLMT (PHOSPHOLIPID N-METHYLTRANSFERASE); phosphatidyl-N-dimethylethanolamine N-methyltransferase/ phosphatidyl-N-methylethanolamine N-methyltransferase  note PHOSPHOLIPID N-METHYLTRANSFERASE (PLMT); FUNCTIONS IN: phosphatidyl-N-dimethylethanolamine N-methyltransferase activity, phosphatidyl-N-methylethanolamine N-methyltransferase activity; INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: microsome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid methyltransferase (InterPro:IPR007318); Has 36 Blast hits to 36 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 16; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G80860.1p  transcript_id AT1G80860.1  protein_id AT1G80860.1p  transcript_id AT1G80860.1  
At1g80860	chr1:030389040	0.0	C/30389040-30389284,30388432-30388681	AT1G80860.2  CDS  gene_syn ARABIDOPSIS PHOSPHOLIPID N-METHYLTRANSFERASE, ATPLMT, F23A5.21, F23A5_21, PHOSPHOLIPID N-METHYLTRANSFERASE, PLMT  gene PLMT  function Encodes a single-copy phospholipid N-methyltransferase, involved in phosphatidylcholine biosynthesis. Has specific activity towards phosphatidylmonomethylethanolamine and phosphatidyldimethylethanolamine, but not phosphatidylethanolamine.  go_component microsome|GO:0005792|19366698|IDA  go_process phospholipid biosynthetic process|GO:0008654|19366698|IMP  go_function phosphatidyl-N-methylethanolamine N-methyltransferase activity|GO:0000773|19366698|IDA  go_function phosphatidyl-N-dimethylethanolamine N-methyltransferase activity|GO:0080101|19366698|IDA  product PLMT (PHOSPHOLIPID N-METHYLTRANSFERASE); phosphatidyl-N-dimethylethanolamine N-methyltransferase/ phosphatidyl-N-methylethanolamine N-methyltransferase  note PHOSPHOLIPID N-METHYLTRANSFERASE (PLMT); FUNCTIONS IN: phosphatidyl-N-dimethylethanolamine N-methyltransferase activity, phosphatidyl-N-methylethanolamine N-methyltransferase activity; INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: microsome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid methyltransferase (InterPro:IPR007318); Has 36 Blast hits to 36 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 16; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G80860.2p  transcript_id AT1G80860.2  protein_id AT1G80860.2p  transcript_id AT1G80860.2  
At1g80865	chr1:030389627	0.0	W/30389627-30389827,30390127-30390318	AT1G80865.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G80865.1p  transcript_id AT1G80865.1  protein_id AT1G80865.1p  transcript_id AT1G80865.1  
At1g80870	chr1:030392133	0.0	W/30392133-30394211	AT1G80870.1  CDS  gene_syn F23A5.23, F23A5_23  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G25390.2); Has 62814 Blast hits to 53478 proteins in 2265 species: Archae - 23; Bacteria - 3720; Metazoa - 22735; Fungi - 3590; Plants - 24293; Viruses - 157; Other Eukaryotes - 8296 (source: NCBI BLink).  protein_id AT1G80870.1p  transcript_id AT1G80870.1  protein_id AT1G80870.1p  transcript_id AT1G80870.1  
At1g80880	chr1:030396329	0.0	C/30396329-30396921,30395194-30396223	AT1G80880.1  CDS  gene_syn F23A5.24, F23A5_24  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G15010.1); Has 12000 Blast hits to 4296 proteins in 169 species: Archae - 3; Bacteria - 14; Metazoa - 310; Fungi - 157; Plants - 11089; Viruses - 0; Other Eukaryotes - 427 (source: NCBI BLink).  protein_id AT1G80880.1p  transcript_id AT1G80880.1  protein_id AT1G80880.1p  transcript_id AT1G80880.1  
At1g80890	chr1:030397211	0.0	W/30397211-30397361,30397784-30397875	AT1G80890.1  CDS  gene_syn F23A5.25, F23A5_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16000.1); Has 24 Blast hits to 23 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G80890.1p  transcript_id AT1G80890.1  protein_id AT1G80890.1p  transcript_id AT1G80890.1  
At1g80900	chr1:030399280	0.0	C/30399280-30399870,30398748-30399209,30398606-30398653,30398289-30398519	AT1G80900.1  CDS  gene_syn F23A5.26, F23A5_26  go_component membrane|GO:0016020||IEA  go_process metal ion transport|GO:0030001||IEA  go_function metal ion transmembrane transporter activity|GO:0046873||IEA  go_component membrane|GO:0016020||ISS  go_process metal ion transport|GO:0030001||ISS  go_function metal ion transmembrane transporter activity|GO:0046873||ISS  product magnesium transporter CorA-like family protein (MGT1) (MRS2)  note magnesium transporter CorA-like family protein (MGT1) (MRS2); FUNCTIONS IN: metal ion transmembrane transporter activity; INVOLVED IN: metal ion transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mg2+ transporter protein, CorA-like (InterPro:IPR002523); BEST Arabidopsis thaliana protein match is: magnesium transporter CorA-like family protein (MRS2-1) (TAIR:AT1G16010.2); Has 507 Blast hits to 497 proteins in 130 species: Archae - 0; Bacteria - 34; Metazoa - 66; Fungi - 135; Plants - 201; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT1G80900.1p  transcript_id AT1G80900.1  protein_id AT1G80900.1p  transcript_id AT1G80900.1  
At1g80910	chr1:030401143	0.0	W/30401143-30401324,30401477-30401570,30401666-30401849,30401931-30402040,30402120-30402215,30402367-30402792,30402878-30403033,30403126-30403340,30403436-30403466	AT1G80910.1  CDS  gene_syn F23A5.27, F23A5_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16020.2); Has 140 Blast hits to 140 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 117; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G80910.1p  transcript_id AT1G80910.1  protein_id AT1G80910.1p  transcript_id AT1G80910.1  
At1g80920	chr1:030404307	0.0	C/30404307-30404549,30404150-30404218,30403863-30404042	AT1G80920.1  CDS  gene_syn F23A5.28, F23A5_28, J8  gene J8  function J8 mRNA, nuclear gene encoding plastid protein, complete  go_component chloroplast|GO:0009507||IEA  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_process protein folding|GO:0006457||ISS  product J8; heat shock protein binding / unfolded protein binding  note J8; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT1G72070.1); Has 7324 Blast hits to 7324 proteins in 1435 species: Archae - 84; Bacteria - 3332; Metazoa - 1168; Fungi - 403; Plants - 429; Viruses - 3; Other Eukaryotes - 1905 (source: NCBI BLink).  protein_id AT1G80920.1p  transcript_id AT1G80920.1  protein_id AT1G80920.1p  transcript_id AT1G80920.1  
At1g80930	chr1:030408150	0.0	C/30408150-30409499,30407856-30408045,30407426-30407529,30407218-30407314,30406812-30407113,30406355-30406660,30405774-30406127	AT1G80930.1  CDS  gene_syn F23A5.29, F23A5_29  go_process RNA metabolic process|GO:0016070||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process translation|GO:0006412||ISS  go_function RNA binding|GO:0003723||ISS  product MIF4G domain-containing protein / MA3 domain-containing protein  note MIF4G domain-containing protein / MA3 domain-containing protein; FUNCTIONS IN: protein binding, RNA binding, binding; INVOLVED IN: translation, RNA metabolic process; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891), Armadillo-type fold (InterPro:IPR016024), MIF4G-like, type 3 (InterPro:IPR003890), MIF4-like, type 1/2/3 (InterPro:IPR016021); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52325.1); Has 47042 Blast hits to 24073 proteins in 1049 species: Archae - 54; Bacteria - 3998; Metazoa - 22628; Fungi - 5603; Plants - 2672; Viruses - 351; Other Eukaryotes - 11736 (source: NCBI BLink).  protein_id AT1G80930.1p  transcript_id AT1G80930.1  protein_id AT1G80930.1p  transcript_id AT1G80930.1  
At1g80940	chr1:030410959	0.0	W/30410959-30411073,30411349-30411680,30411749-30411943	AT1G80940.1  CDS  gene_syn F23A5.30, F23A5_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 52 Blast hits to 52 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 2; Plants - 22; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G80940.1p  transcript_id AT1G80940.1  protein_id AT1G80940.1p  transcript_id AT1G80940.1  
At1g80940	chr1:030410959	0.0	W/30410959-30411073,30411349-30411761	AT1G80940.2  CDS  gene_syn F23A5.30, F23A5_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 22 Blast hits to 22 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G80940.2p  transcript_id AT1G80940.2  protein_id AT1G80940.2p  transcript_id AT1G80940.2  
At1g80950	chr1:030414420	0.0	C/30414420-30414935,30413957-30414082,30413784-30413821,30413584-30413648,30413313-30413381,30413100-30413233,30412858-30412998,30412653-30412760	AT1G80950.1  CDS  gene_syn F23A5.31, F23A5_31  go_process metabolic process|GO:0008152||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process metabolic process|GO:0008152||ISS  go_function acyltransferase activity|GO:0008415||ISS  product phospholipid/glycerol acyltransferase family protein  note phospholipid/glycerol acyltransferase family protein; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: endoplasmic reticulum, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: calcineurin B subunit-related (TAIR:AT2G45670.1); Has 2991 Blast hits to 2990 proteins in 864 species: Archae - 0; Bacteria - 1576; Metazoa - 549; Fungi - 76; Plants - 104; Viruses - 0; Other Eukaryotes - 686 (source: NCBI BLink).  protein_id AT1G80950.1p  transcript_id AT1G80950.1  protein_id AT1G80950.1p  transcript_id AT1G80950.1  
At1g80960	chr1:030416065	0.0	W/30416065-30416106,30416437-30416529,30416636-30416857,30416947-30417567,30417667-30417709,30417782-30417852,30417924-30418220	AT1G80960.3  CDS  gene_syn F23A5.32, F23A5_32  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box protein-related  note F-box protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G67390.1); Has 1075 Blast hits to 1061 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1075; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G80960.3p  transcript_id AT1G80960.3  protein_id AT1G80960.3p  transcript_id AT1G80960.3  
At1g80960	chr1:030416065	0.0	W/30416065-30416106,30416437-30416529,30416636-30416857,30416947-30417567,30417667-30417852,30417924-30418220	AT1G80960.1  CDS  gene_syn F23A5.32, F23A5_32  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box protein-related  note F-box protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G67390.1); Has 1070 Blast hits to 1056 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1070; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G80960.1p  transcript_id AT1G80960.1  protein_id AT1G80960.1p  transcript_id AT1G80960.1  
At1g80960	chr1:030416065	0.0	W/30416065-30416106,30416437-30416529,30416636-30416857,30416947-30417567,30417667-30417852,30417924-30418220	AT1G80960.2  CDS  gene_syn F23A5.32, F23A5_32  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box protein-related  note F-box protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G67390.1); Has 1070 Blast hits to 1056 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1070; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G80960.2p  transcript_id AT1G80960.2  protein_id AT1G80960.2p  transcript_id AT1G80960.2  
At1g80970	chr1:030420167	0.0	W/30420167-30420370,30420464-30420904	AT1G80970.1  CDS  gene_syn F23A5.33, F23A5_33  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product XH domain-containing protein  note XH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, leaf whorl, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Region of unknown function XH (InterPro:IPR005379); BEST Arabidopsis thaliana protein match is: XH domain-containing protein (TAIR:AT1G80990.1); Has 23 Blast hits to 23 proteins in 6 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G80970.1p  transcript_id AT1G80970.1  protein_id AT1G80970.1p  transcript_id AT1G80970.1  
At1g80980	chr1:030423199	0.0	C/30423199-30423440,30422766-30422815,30422619-30422671,30422184-30422483	AT1G80980.1  CDS  gene_syn F23A5.34, F23A5_34  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80700.1); Has 456 Blast hits to 320 proteins in 70 species: Archae - 2; Bacteria - 29; Metazoa - 88; Fungi - 39; Plants - 25; Viruses - 0; Other Eukaryotes - 273 (source: NCBI BLink).  protein_id AT1G80980.1p  transcript_id AT1G80980.1  protein_id AT1G80980.1p  transcript_id AT1G80980.1  
At1g80990	chr1:030424421	0.0	W/30424421-30424675,30424758-30425192	AT1G80990.1  CDS  gene_syn F23A5.35, F23A5_35  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product XH domain-containing protein  note XH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Region of unknown function XH (InterPro:IPR005379); BEST Arabidopsis thaliana protein match is: XH domain-containing protein (TAIR:AT1G80970.1); Has 50 Blast hits to 50 proteins in 23 species: Archae - 2; Bacteria - 16; Metazoa - 9; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G80990.1p  transcript_id AT1G80990.1  protein_id AT1G80990.1p  transcript_id AT1G80990.1  
At1g81001	chr1:030425840	0.0	C/30425840-30426557	AT1G81001.1  pseudogenic_transcript  pseudo  function unknown pseudogene  
At1g81020	chr1:030426839	0.0	W/30426839-30427577	AT1G81020.1  pseudogenic_transcript  pseudo  gene_syn TEL1S.3  note pseudogene, similar to Putative FH protein interacting protein FIP1, blastp match of 61% identity and 2.3e-42 P-value to GP|24756872|gb|AAN64136.1||AC121489 Putative FH protein interacting protein FIP1 {Oryza sativa (japonica cultivar-group)}  >Feature ref|NC_003071|  
At2g01008	chr2:000001871	0.0	W/1871-2111	AT2G01008.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G01008.1  
At2g01010	chr2:000003706	0.0	W/3706-5513	AT2G01010.1  rRNA  gene_syn 51593.RRNA00001  go_component cytosolic small ribosomal subunit|GO:0022627|2798101|ISS  go_process translation|GO:0006412|2798101|ISS  go_function molecular_function|GO:0003674||ND  product rRNA  note 18SrRNA  transcript_id AT2G01010.1  
At2g01020	chr2:000005782	0.0	W/5782-5945	AT2G01020.1  rRNA  gene_syn 51593.RRNA00002  go_component cytosolic large ribosomal subunit|GO:0022625||TAS  go_process peptide biosynthetic process|GO:0043043||TAS  go_function molecular_function|GO:0003674||ND  product rRNA  note 5SrRNA  transcript_id AT2G01020.1  
At2g01021	chr2:000006571	0.0	W/6571-6672	AT2G01021.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G01021.1p  transcript_id AT2G01021.1  protein_id AT2G01021.1p  transcript_id AT2G01021.1  
At2g01023	chr2:000009648	0.0	C/9648-9767	AT2G01023.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G01023.1p  transcript_id AT2G01023.1  protein_id AT2G01023.1p  transcript_id AT2G01023.1  
At2g01022	chr2:000010478	0.0	C/10478-12861	AT2G01022.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 4.3e-208 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At2g01024	chr2:000014395	0.0	C/14395-16377	AT2G01024.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 2.7e-175 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At2g01026	chr2:000017624	0.0	C/17624-22540	AT2G01026.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At2g01028	chr2:000023971	0.0	C/23971-26923	AT2G01028.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 3.0e-150 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At2g01029	chr2:000028465	0.0	W/28465-38652	AT2G01029.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.7e-215 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays)  
At2g01031	chr2:000039519	0.0	C/39519-40358	AT2G01031.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G09910.1)  
At2g01034	chr2:000043427	0.0	C/43427-48350	AT2G01034.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At2g01037	chr2:000058705	0.0	C/58705-64872	AT2G01037.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 5.0e-229 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At2g01040	chr2:000065436	0.0	C/65436-67139	AT2G01040.1  mRNA_TE_gene  pseudo  gene_syn F23H14.1  note Transposable element gene, pseudogene, disease resistance protein, similar to GB:AAD03361  
At2g01050	chr2:000068337	0.0	C/68337-69884	AT2G01050.1  CDS  gene_syn F23H14.2, F23H14_2  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding / zinc ion binding  note nucleic acid binding / zinc ion binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G31430.1); Has 201 Blast hits to 201 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 201; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G01050.1p  transcript_id AT2G01050.1  protein_id AT2G01050.1p  transcript_id AT2G01050.1  
At2g01060	chr2:000074509	0.0	C/74509-74556,74383-74425,74240-74297,74073-74142,73456-73950	AT2G01060.2  CDS  gene_syn F23H14.3, F23H14_3  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT3G13040.2); Has 297 Blast hits to 293 proteins in 22 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 296; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G01060.2p  transcript_id AT2G01060.2  protein_id AT2G01060.2p  transcript_id AT2G01060.2  
At2g01060	chr2:000074785	0.0	C/74785-74902,74509-74585,74383-74425,74240-74297,74073-74142,73456-73950	AT2G01060.1  CDS  gene_syn F23H14.3, F23H14_3  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT3G13040.2); Has 911 Blast hits to 902 proteins in 37 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 902; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT2G01060.1p  transcript_id AT2G01060.1  protein_id AT2G01060.1p  transcript_id AT2G01060.1  
At2g01070	chr2:000075596	0.0	W/75596-75780,75858-76779,76880-76975,77145-77281,77475-77625	AT2G01070.1  CDS  gene_syn F23H14.4, F23H14_4  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72480.1); Has 500 Blast hits to 499 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 271; Fungi - 99; Plants - 97; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT2G01070.1p  transcript_id AT2G01070.1  protein_id AT2G01070.1p  transcript_id AT2G01070.1  
At2g01070	chr2:000075596	0.0	W/75596-75780,75858-76779,76880-76975,77145-77300	AT2G01070.2  CDS  gene_syn F23H14.4, F23H14_4  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72480.1); Has 487 Blast hits to 486 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 264; Fungi - 101; Plants - 89; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT2G01070.2p  transcript_id AT2G01070.2  protein_id AT2G01070.2p  transcript_id AT2G01070.2  
At2g01080	chr2:000078038	0.0	W/78038-78646,79090-79176	AT2G01080.1  CDS  gene_syn F23H14.5, F23H14_5  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54200.1); Has 388 Blast hits to 387 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 386; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G01080.1p  transcript_id AT2G01080.1  protein_id AT2G01080.1p  transcript_id AT2G01080.1  
At2g01090	chr2:000080179	0.0	W/80179-80180,80606-80690,80856-80957	AT2G01090.1  CDS  gene_syn F23H14.6, F23H14_6  go_process mitochondrial electron transport, ubiquinol to cytochrome c|GO:0006122||IEA  go_function ubiquinol-cytochrome-c reductase activity|GO:0008121||IEA  go_component mitochondrial respiratory chain complex III|GO:0005750||ISS  go_process mitochondrial electron transport, ubiquinol to cytochrome c|GO:0006122||ISS  go_function ubiquinol-cytochrome-c reductase activity|GO:0008121||ISS  product ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative  note ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative; FUNCTIONS IN: ubiquinol-cytochrome-c reductase activity; INVOLVED IN: mitochondrial electron transport, ubiquinol to cytochrome c; LOCATED IN: mitochondrial respiratory chain complex III; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquinol-cytochrome C reductase hinge (InterPro:IPR003422); BEST Arabidopsis thaliana protein match is: ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative (TAIR:AT1G15120.1); Has 95 Blast hits to 95 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 2; Plants - 49; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT2G01090.1p  transcript_id AT2G01090.1  protein_id AT2G01090.1p  transcript_id AT2G01090.1  
At2g01100	chr2:000082245	0.0	W/82245-82988	AT2G01100.1  CDS  gene_syn F23H14.7, F23H14_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 18138 Blast hits to 9351 proteins in 574 species: Archae - 0; Bacteria - 666; Metazoa - 10236; Fungi - 1653; Plants - 1129; Viruses - 52; Other Eukaryotes - 4402 (source: NCBI BLink).  protein_id AT2G01100.1p  transcript_id AT2G01100.1  protein_id AT2G01100.1p  transcript_id AT2G01100.1  
At2g01100	chr2:000082245	0.0	W/82245-82988	AT2G01100.2  CDS  gene_syn F23H14.7, F23H14_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 18138 Blast hits to 9351 proteins in 574 species: Archae - 0; Bacteria - 666; Metazoa - 10236; Fungi - 1653; Plants - 1129; Viruses - 52; Other Eukaryotes - 4402 (source: NCBI BLink).  protein_id AT2G01100.2p  transcript_id AT2G01100.2  protein_id AT2G01100.2p  transcript_id AT2G01100.2  
At2g01100	chr2:000082245	0.0	W/82245-82988	AT2G01100.3  CDS  gene_syn F23H14.7, F23H14_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 18138 Blast hits to 9351 proteins in 574 species: Archae - 0; Bacteria - 666; Metazoa - 10236; Fungi - 1653; Plants - 1129; Viruses - 52; Other Eukaryotes - 4402 (source: NCBI BLink).  protein_id AT2G01100.3p  transcript_id AT2G01100.3  protein_id AT2G01100.3p  transcript_id AT2G01100.3  
At2g01110	chr2:000084836	0.0	C/84836-85088,84450-84718,84085-84375,83786-83995	AT2G01110.1  CDS  gene_syn ALBINO AND PALE GREEN 2, APG2, F23H14.8, F23H14_8, PGA2, TATC, TWIN-ARGININE TRANSLOCATION C, UNE3, unfertilized embryo sac 3  gene APG2  function mutant is Albino and pale green; Chloroplast Protein Translocation (tatC). Core subunit of the chloroplast Tat translocase. Integral chloroplast thylakoid membrane protein.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|19207210|IDA  go_component integral to thylakoid membrane|GO:0031361|19207210|IDA  go_component receptor complex|GO:0043235|19207210|IDA  go_process double fertilization forming a zygote and endosperm|GO:0009567|15634699|IMP  go_process thylakoid membrane organization|GO:0010027|11526245|IMP  go_function proton motive force dependent protein transmembrane transporter activity|GO:0009977|12029389|ISS  product APG2 (ALBINO AND PALE GREEN 2); proton motive force dependent protein transmembrane transporter  note ALBINO AND PALE GREEN 2 (APG2); FUNCTIONS IN: proton motive force dependent protein transmembrane transporter activity; INVOLVED IN: thylakoid membrane organization, double fertilization forming a zygote and endosperm; LOCATED IN: chloroplast thylakoid membrane, receptor complex, chloroplast, integral to thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec-independent periplasmic protein translocase (InterPro:IPR002033); Has 4268 Blast hits to 4249 proteins in 1043 species: Archae - 101; Bacteria - 1929; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 2191 (source: NCBI BLink).  protein_id AT2G01110.1p  transcript_id AT2G01110.1  protein_id AT2G01110.1p  transcript_id AT2G01110.1  
At2g01120	chr2:000085444	0.0	W/85444-85553,85642-85732,85821-85877,85965-86012,86097-86147,86234-86277,86351-86414,86512-86601,86748-86839,86923-87004,87121-87206,87286-87395,87467-87559,87630-87694,87761-87904,87998-88027	AT2G01120.1  CDS  gene_syn ATORC4, F23H14.9, F23H14_9, ORC4, ORIGIN RECOGNITION COMPLEX SUBUNIT 4  gene ORC4  function Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.  go_component origin recognition complex|GO:0000808|16179646|ISS  go_process DNA replication|GO:0006260|16179646|ISS  go_function protein binding|GO:0005515|16179646|IPI  product ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4); protein binding  note ORIGIN RECOGNITION COMPLEX SUBUNIT 4 (ORC4); FUNCTIONS IN: protein binding; INVOLVED IN: DNA replication; LOCATED IN: origin recognition complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Origin recognition complex, subunit 4 (InterPro:IPR016527); Has 115 Blast hits to 115 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 89; Fungi - 4; Plants - 19; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G01120.1p  transcript_id AT2G01120.1  protein_id AT2G01120.1p  transcript_id AT2G01120.1  
At2g01130	chr2:000094495	0.0	C/94495-94635,94187-94347,94028-94115,93709-93933,93529-93624,93201-93389,92925-93084,92709-92839,92404-92571,92057-92329,91655-91849,91102-91305,90899-90968,90671-90819,90046-90351,89897-89956,89649-89801,89437-89547,88847-89308	AT2G01130.1  CDS  gene_syn F10A8.28  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function double-stranded RNA binding|GO:0003725||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function helicase activity|GO:0004386||ISS  go_function ATP binding|GO:0005524||ISS  product ATP binding / ATP-dependent helicase/ RNA binding / double-stranded RNA binding / helicase/ nucleic acid binding  note ATP binding / ATP-dependent helicase/ RNA binding / double-stranded RNA binding / helicase/ nucleic acid binding; FUNCTIONS IN: in 6 functions; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated region (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Double-stranded RNA binding (InterPro:IPR001159), Region of unknown function DUF1605 (InterPro:IPR011709), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: helicase domain-containing protein (TAIR:AT1G48650.2); Has 8875 Blast hits to 6126 proteins in 896 species: Archae - 8; Bacteria - 2994; Metazoa - 2528; Fungi - 1130; Plants - 457; Viruses - 73; Other Eukaryotes - 1685 (source: NCBI BLink).  protein_id AT2G01130.1p  transcript_id AT2G01130.1  protein_id AT2G01130.1p  transcript_id AT2G01130.1  
At2g01140	chr2:000096336	0.0	C/96336-96491,95954-96223,95749-95858,95006-95645	AT2G01140.1  CDS  go_component mitochondrion|GO:0005739|18385124|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component chloroplast|GO:0009507|10725559|ISS  go_component plastoglobule|GO:0010287|16461379|IDA  go_process pentose-phosphate shunt|GO:0006098||TAS  go_process response to oxidative stress|GO:0006979|12492832|IDA  go_function fructose-bisphosphate aldolase activity|GO:0004332|10725559|ISS  product fructose-bisphosphate aldolase, putative  note fructose-bisphosphate aldolase, putative; FUNCTIONS IN: fructose-bisphosphate aldolase activity; INVOLVED IN: response to oxidative stress, response to cadmium ion, pentose-phosphate shunt; LOCATED IN: mitochondrion, chloroplast, plastoglobule; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741); BEST Arabidopsis thaliana protein match is: fructose-bisphosphate aldolase, putative (TAIR:AT4G38970.1); Has 4200 Blast hits to 4196 proteins in 676 species: Archae - 0; Bacteria - 431; Metazoa - 1018; Fungi - 2; Plants - 339; Viruses - 0; Other Eukaryotes - 2410 (source: NCBI BLink).  protein_id AT2G01140.1p  transcript_id AT2G01140.1  protein_id AT2G01140.1p  transcript_id AT2G01140.1  
At2g01150	chr2:000100703	0.0	W/100703-101146	AT2G01150.1  CDS  gene_syn F10A8.3, F10A8_3, RHA2B, RING-H2 FINGER PROTEIN 2B, RING-H2 FINGER PROTEIN RHA2B  gene RHA2B  function Encodes a RING-H2 finger protein that is expressed in vascular tissue, root tips, embryos and pistils.  go_function ubiquitin-protein ligase activity|GO:0004842|12062802|TAS  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product RHA2B (RING-H2 FINGER PROTEIN 2B); protein binding / ubiquitin-protein ligase/ zinc ion binding  note RING-H2 FINGER PROTEIN 2B (RHA2B); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: RHA2A; protein binding / ubiquitin-protein ligase/ zinc ion binding (TAIR:AT1G15100.1); Has 5686 Blast hits to 5668 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 1863; Fungi - 450; Plants - 2435; Viruses - 15; Other Eukaryotes - 923 (source: NCBI BLink).  protein_id AT2G01150.1p  transcript_id AT2G01150.1  protein_id AT2G01150.1p  transcript_id AT2G01150.1  
At2g01160	chr2:000102065	0.0	W/102065-102138	AT2G01160.1  tRNA  gene_syn 48852.TRNA-ASN-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asn (anticodon: GTT)  transcript_id AT2G01160.1  
At2g01170	chr2:000104033	0.0	C/104033-104157,103926-103944,103623-103842,103362-103543,102999-103288,102788-102917,102364-102711	AT2G01170.2  CDS  gene_syn BAT1, BIDIRECTIONAL AMINO ACID TRANSPORTER 1  gene BAT1  function Encodes a bidirectional amino acid transporter that can transport ala, arg, glu and lys but not GABA or pro with both export and import activity. Its expression is localized in the vascular tissues suggesting a function in amino acids export from the phloem into sink tissue.  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process amino acid transport|GO:0006865||IEA  go_function L-glutamate transmembrane transporter activity|GO:0005313|19199104|IDA  go_function L-alanine transmembrane transporter activity|GO:0015180|19199104|IDA  go_function arginine transmembrane transporter activity|GO:0015181|19199104|IDA  go_function L-lysine transmembrane transporter activity|GO:0015189|19199104|IDA  product BAT1 (BIDIRECTIONAL AMINO ACID TRANSPORTER 1); amino acid transmembrane transporter  note BIDIRECTIONAL AMINO ACID TRANSPORTER 1 (BAT1); FUNCTIONS IN: L-lysine transmembrane transporter activity, arginine transmembrane transporter activity, L-alanine transmembrane transporter activity, L-glutamate transmembrane transporter activity; INVOLVED IN: transport, amino acid transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid permease subfamily (InterPro:IPR004756), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease-associated region (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: CAT3 (CATIONIC AMINO ACID TRANSPORTER 3); basic amino acid transmembrane transporter/ cationic amino acid transmembrane transporter (TAIR:AT5G36940.1); Has 6063 Blast hits to 6048 proteins in 883 species: Archae - 125; Bacteria - 4273; Metazoa - 205; Fungi - 1143; Plants - 114; Viruses - 0; Other Eukaryotes - 203 (source: NCBI BLink).  protein_id AT2G01170.2p  transcript_id AT2G01170.2  protein_id AT2G01170.2p  transcript_id AT2G01170.2  
At2g01170	chr2:000104362	0.0	C/104362-104462,104033-104293,103926-103944,103623-103842,103362-103543,102999-103288,102788-102917,102364-102711	AT2G01170.1  CDS  gene_syn BAT1, BIDIRECTIONAL AMINO ACID TRANSPORTER 1  gene BAT1  function Encodes a bidirectional amino acid transporter that can transport ala, arg, glu and lys but not GABA or pro with both export and import activity. Its expression is localized in the vascular tissues suggesting a function in amino acids export from the phloem into sink tissue.  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process amino acid transport|GO:0006865||IEA  go_function L-glutamate transmembrane transporter activity|GO:0005313|19199104|IDA  go_function L-alanine transmembrane transporter activity|GO:0015180|19199104|IDA  go_function arginine transmembrane transporter activity|GO:0015181|19199104|IDA  go_function L-lysine transmembrane transporter activity|GO:0015189|19199104|IDA  product BAT1 (BIDIRECTIONAL AMINO ACID TRANSPORTER 1); amino acid transmembrane transporter  note BIDIRECTIONAL AMINO ACID TRANSPORTER 1 (BAT1); FUNCTIONS IN: L-lysine transmembrane transporter activity, arginine transmembrane transporter activity, L-alanine transmembrane transporter activity, L-glutamate transmembrane transporter activity; INVOLVED IN: amino acid transport, transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid permease subfamily (InterPro:IPR004756), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease-associated region (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: CAT3 (CATIONIC AMINO ACID TRANSPORTER 3); basic amino acid transmembrane transporter/ cationic amino acid transmembrane transporter (TAIR:AT5G36940.1); Has 7733 Blast hits to 7710 proteins in 974 species: Archae - 172; Bacteria - 5405; Metazoa - 372; Fungi - 1348; Plants - 126; Viruses - 0; Other Eukaryotes - 310 (source: NCBI BLink).  protein_id AT2G01170.1p  transcript_id AT2G01170.1  protein_id AT2G01170.1p  transcript_id AT2G01170.1  
At2g01175	chr2:000105572	0.0	C/105572-105760	AT2G01175.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G01175.1p  transcript_id AT2G01175.1  protein_id AT2G01175.1p  transcript_id AT2G01175.1  
At2g01180	chr2:000107182	0.0	C/107182-108090	AT2G01180.2  CDS  gene_syn ATLPP1, ATPAP1, F10A8.6, F10A8_6, LIPID PHOSPHATE PHOSPHATASE 1, LPP1, PAP1, PHOSPHATIDIC ACID PHOSPHATASE 1  gene ATPAP1  function Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component integral to plasma membrane|GO:0005887|11278556|TAS  go_process phospholipid metabolic process|GO:0006644||NAS  go_process response to stress|GO:0006950|11278556|IEP  go_function phosphatidate phosphatase activity|GO:0008195|11278556|IDA  go_function phosphatidate phosphatase activity|GO:0008195||ISS  product ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1); phosphatidate phosphatase  note PHOSPHATIDIC ACID PHOSPHATASE 1 (ATPAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: LPP3 (LIPID PHOSPHATE PHOSPHATASE 3); phosphatidate phosphatase (TAIR:AT3G02600.5); Has 1586 Blast hits to 1581 proteins in 252 species: Archae - 4; Bacteria - 206; Metazoa - 802; Fungi - 260; Plants - 115; Viruses - 2; Other Eukaryotes - 197 (source: NCBI BLink).  protein_id AT2G01180.2p  transcript_id AT2G01180.2  protein_id AT2G01180.2p  transcript_id AT2G01180.2  
At2g01180	chr2:000108505	0.0	C/108505-108555,107182-108114	AT2G01180.1  CDS  gene_syn ATLPP1, ATPAP1, F10A8.6, F10A8_6, LIPID PHOSPHATE PHOSPHATASE 1, LPP1, PAP1, PHOSPHATIDIC ACID PHOSPHATASE 1  gene ATPAP1  function Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component integral to plasma membrane|GO:0005887|11278556|TAS  go_process phospholipid metabolic process|GO:0006644||NAS  go_process response to stress|GO:0006950|11278556|IEP  go_function phosphatidate phosphatase activity|GO:0008195|11278556|IDA  go_function phosphatidate phosphatase activity|GO:0008195||ISS  product ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1); phosphatidate phosphatase  note PHOSPHATIDIC ACID PHOSPHATASE 1 (ATPAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: LPP3 (LIPID PHOSPHATE PHOSPHATASE 3); phosphatidate phosphatase (TAIR:AT3G02600.1); Has 1586 Blast hits to 1581 proteins in 252 species: Archae - 4; Bacteria - 206; Metazoa - 802; Fungi - 260; Plants - 115; Viruses - 2; Other Eukaryotes - 197 (source: NCBI BLink).  protein_id AT2G01180.1p  transcript_id AT2G01180.1  protein_id AT2G01180.1p  transcript_id AT2G01180.1  
At2g01190	chr2:000115023	0.0	W/115023-116323,116435-117296	AT2G01190.1  CDS  gene_syn F10A8.7, F10A8_7  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  product octicosapeptide/Phox/Bem1p (PB1) domain-containing protein  note octicosapeptide/Phox/Bem1p (PB1) domain-containing protein; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (TAIR:AT3G18230.1); Has 4611 Blast hits to 3905 proteins in 270 species: Archae - 2; Bacteria - 52; Metazoa - 2224; Fungi - 1016; Plants - 667; Viruses - 26; Other Eukaryotes - 624 (source: NCBI BLink).  protein_id AT2G01190.1p  transcript_id AT2G01190.1  protein_id AT2G01190.1p  transcript_id AT2G01190.1  
At2g01200	chr2:000118385	0.0	W/118385-118532,118636-118887,118967-119075,119153-119219	AT2G01200.2  CDS  gene_syn F10A8.8, F10A8_8, IAA32, INDOLE-3-ACETIC ACID INDUCIBLE 32, MEE10, maternal effect embryo arrest 10  gene IAA32  function Belongs to auxin inducible gene family.  go_component nucleus|GO:0005634||IEA  go_process pollen development|GO:0009555|19237690|IMP  go_process response to auxin stimulus|GO:0009733|12036262|TAS  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product IAA32 (INDOLE-3-ACETIC ACID INDUCIBLE 32); transcription factor  note INDOLE-3-ACETIC ACID INDUCIBLE 32 (IAA32); FUNCTIONS IN: transcription factor activity; INVOLVED IN: embryonic development ending in seed dormancy, response to auxin stimulus, pollen development; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA34 (INDOLE-3-ACETIC ACID INDUCIBLE 34); transcription factor (TAIR:AT1G15050.1); Has 740 Blast hits to 740 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 740; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G01200.2p  transcript_id AT2G01200.2  protein_id AT2G01200.2p  transcript_id AT2G01200.2  
At2g01200	chr2:000118385	0.0	W/118385-118532,118636-118887,118975-119006	AT2G01200.1  CDS  gene_syn F10A8.8, F10A8_8, IAA32, INDOLE-3-ACETIC ACID INDUCIBLE 32, MEE10, maternal effect embryo arrest 10  gene IAA32  function Belongs to auxin inducible gene family.  go_component nucleus|GO:0005634||IEA  go_process pollen development|GO:0009555|19237690|IMP  go_process response to auxin stimulus|GO:0009733|12036262|TAS  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product IAA32 (INDOLE-3-ACETIC ACID INDUCIBLE 32); transcription factor  note INDOLE-3-ACETIC ACID INDUCIBLE 32 (IAA32); FUNCTIONS IN: transcription factor activity; INVOLVED IN: embryonic development ending in seed dormancy, response to auxin stimulus, pollen development; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525); BEST Arabidopsis thaliana protein match is: IAA34 (INDOLE-3-ACETIC ACID INDUCIBLE 34); transcription factor (TAIR:AT1G15050.1); Has 27 Blast hits to 27 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G01200.1p  transcript_id AT2G01200.1  protein_id AT2G01200.1p  transcript_id AT2G01200.1  
At2g01210	chr2:000120264	0.0	C/120264-121734,119509-120188	AT2G01210.1  CDS  gene_syn F10A8.9, F10A8_9  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: chloroplast stroma, chloroplast, plasma membrane, plant-type cell wall; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT1G25320.1); Has 89976 Blast hits to 68645 proteins in 2843 species: Archae - 52; Bacteria - 6448; Metazoa - 29578; Fungi - 4642; Plants - 37540; Viruses - 173; Other Eukaryotes - 11543 (source: NCBI BLink).  protein_id AT2G01210.1p  transcript_id AT2G01210.1  protein_id AT2G01210.1p  transcript_id AT2G01210.1  
At2g01220	chr2:000123301	0.0	W/123301-123390,123483-123581,123671-123755,123854-123923,124065-124125,124216-124269,124551-124707,124811-124907,125274-125383,125592-125698,125876-125986,126088-126213	AT2G01220.2  CDS  gene_syn AT2G01230, F10A8.10, F10A8_10  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process biosynthetic process|GO:0009058||IEA  go_function nucleotidyltransferase activity|GO:0016779||IEA  product nucleotidyltransferase  note nucleotidyltransferase; FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: biosynthetic process; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cytidylyltransferase (InterPro:IPR004820); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27610.1); Has 373 Blast hits to 367 proteins in 37 species: Archae - 6; Bacteria - 25; Metazoa - 0; Fungi - 5; Plants - 35; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink).  protein_id AT2G01220.2p  transcript_id AT2G01220.2  protein_id AT2G01220.2p  transcript_id AT2G01220.2  
At2g01220	chr2:000123301	0.0	W/123301-123390,123483-123581,123671-123755,123854-123923,124065-124125,124216-124269,124551-124707,124814-124907,125274-125383,125592-125698,125876-125986,126088-126213	AT2G01220.1  CDS  gene_syn AT2G01230, F10A8.10, F10A8_10  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process biosynthetic process|GO:0009058||IEA  go_function nucleotidyltransferase activity|GO:0016779||IEA  product nucleotidyltransferase  note nucleotidyltransferase; FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: biosynthetic process; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cytidylyltransferase (InterPro:IPR004820); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27610.1); Has 374 Blast hits to 368 proteins in 37 species: Archae - 6; Bacteria - 25; Metazoa - 0; Fungi - 5; Plants - 35; Viruses - 0; Other Eukaryotes - 303 (source: NCBI BLink).  protein_id AT2G01220.1p  transcript_id AT2G01220.1  protein_id AT2G01220.1p  transcript_id AT2G01220.1  
At2g01240	chr2:000129107	0.0	C/129107-129256,128863-128970,128706-128775,128440-128594	AT2G01240.1  CDS  gene_syn F10A8.12, F10A8_12  go_component endoplasmic reticulum|GO:0005783||IEA  go_process biological_process|GO:0008150||ND  product reticulon family protein (RTNLB15)  note reticulon family protein (RTNLB15); INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: reticulon family protein (TAIR:AT3G10915.3); Has 217 Blast hits to 217 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 4; Plants - 201; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G01240.1p  transcript_id AT2G01240.1  protein_id AT2G01240.1p  transcript_id AT2G01240.1  
At2g01250	chr2:000134091	0.0	C/134091-134264,133923-134020,133773-133830,133455-133534,133258-133360,132943-133158	AT2G01250.1  CDS  gene_syn F10A8.13, F10A8_13  go_component cell wall|GO:0005618|16287169|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_function transcription regulator activity|GO:0030528||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L7 (RPL7B)  note 60S ribosomal protein L7 (RPL7B); FUNCTIONS IN: structural constituent of ribosome, transcription regulator activity; INVOLVED IN: translation; LOCATED IN: in 8 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30, N-terminal (InterPro:IPR012988), Ribosomal protein L30p/L7e, N-terminal (InterPro:IPR000517), Ribosomal protein L7, eukaryotic (InterPro:IPR005998), Ribosomal protein L30 (InterPro:IPR018038), Ribosomal protein L30, ferredoxin-like fold domain (InterPro:IPR016082); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L7 (RPL7C) (TAIR:AT2G44120.2); Has 979 Blast hits to 977 proteins in 287 species: Archae - 144; Bacteria - 0; Metazoa - 384; Fungi - 146; Plants - 112; Viruses - 0; Other Eukaryotes - 193 (source: NCBI BLink).  protein_id AT2G01250.1p  transcript_id AT2G01250.1  protein_id AT2G01250.1p  transcript_id AT2G01250.1  
At2g01250	chr2:000134091	0.0	C/134091-134264,133923-134020,133773-133830,133455-133534,133258-133360,133038-133079	AT2G01250.2  CDS  gene_syn F10A8.13, F10A8_13  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L7 (RPL7B)  note 60S ribosomal protein L7 (RPL7B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, chloroplast, plasma membrane, large ribosomal subunit, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30, N-terminal (InterPro:IPR012988), Ribosomal protein L30p/L7e, N-terminal (InterPro:IPR000517), Ribosomal protein L30 (InterPro:IPR018038), Ribosomal protein L30, ferredoxin-like fold domain (InterPro:IPR016082); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L7 (RPL7C) (TAIR:AT2G44120.2); Has 813 Blast hits to 813 proteins in 229 species: Archae - 28; Bacteria - 0; Metazoa - 373; Fungi - 145; Plants - 109; Viruses - 0; Other Eukaryotes - 158 (source: NCBI BLink).  protein_id AT2G01250.2p  transcript_id AT2G01250.2  protein_id AT2G01250.2p  transcript_id AT2G01250.2  
At2g01260	chr2:000137253	0.0	C/137253-137504,136938-137164,136623-136851,135996-136087,135714-135717	AT2G01260.3  CDS  gene_syn F10A8.14, F10A8_14  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15030.1); Has 122 Blast hits to 122 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G01260.3p  transcript_id AT2G01260.3  protein_id AT2G01260.3p  transcript_id AT2G01260.3  
At2g01260	chr2:000137253	0.0	C/137253-137504,136938-137164,136623-136851,136170-136255,135907-136087	AT2G01260.2  CDS  gene_syn F10A8.14, F10A8_14  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15030.1); Has 149 Blast hits to 148 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G01260.2p  transcript_id AT2G01260.2  protein_id AT2G01260.2p  transcript_id AT2G01260.2  
At2g01260	chr2:000137253	0.0	C/137253-137504,136938-137164,136623-136851,136170-136255,135996-136087,135494-135717	AT2G01260.1  CDS  gene_syn F10A8.14, F10A8_14  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15030.1); Has 149 Blast hits to 149 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G01260.1p  transcript_id AT2G01260.1  protein_id AT2G01260.1p  transcript_id AT2G01260.1  
At2g01270	chr2:000139457	0.0	W/139457-139650,139916-139940,140010-140102,140200-140381,140546-140615,140712-140780,140861-140937,141030-141171,141255-141295,141377-141523,141608-142039,142126-142141	AT2G01270.1  CDS  gene_syn AtQSOX2, F10A8.15, F10A8_15, quiescin-sulfhydryl oxidase 2  gene AtQSOX2  function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the quiescin-sulfhydryl oxidase (QSOX) family, which possess an Erv1-like domain at the COOH terminus in addition to a TRX domain.  go_process cell redox homeostasis|GO:0045454||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function thiol oxidase activity|GO:0016972||IEA  go_component Golgi apparatus|GO:0005794|16618929|IDA  product AtQSOX2 (quiescin-sulfhydryl oxidase 2); thiol oxidase  note quiescin-sulfhydryl oxidase 2 (AtQSOX2); FUNCTIONS IN: thiol oxidase activity; INVOLVED IN: oxidation reduction, cell redox homeostasis; LOCATED IN: Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Erv1/Alr (InterPro:IPR006863), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), ERV/ALR sulphydryl oxidase (InterPro:IPR017905), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin family protein (TAIR:AT1G15020.2); Has 2221 Blast hits to 1706 proteins in 233 species: Archae - 6; Bacteria - 16; Metazoa - 1374; Fungi - 261; Plants - 295; Viruses - 0; Other Eukaryotes - 269 (source: NCBI BLink).  protein_id AT2G01270.1p  transcript_id AT2G01270.1  protein_id AT2G01270.1p  transcript_id AT2G01270.1  
At2g01275	chr2:000143564	0.0	C/143564-143809,143408-143479,143030-143230,142874-142954,142610-142789	AT2G01275.1  CDS  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G38070.1); Has 1276 Blast hits to 1276 proteins in 146 species: Archae - 0; Bacteria - 2; Metazoa - 679; Fungi - 77; Plants - 311; Viruses - 11; Other Eukaryotes - 196 (source: NCBI BLink).  protein_id AT2G01275.1p  transcript_id AT2G01275.1  protein_id AT2G01275.1p  transcript_id AT2G01275.1  
At2g01275	chr2:000143564	0.0	C/143564-143809,143408-143479,143030-143230,142874-142954,142610-142789	AT2G01275.2  CDS  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G38070.1); Has 1276 Blast hits to 1276 proteins in 146 species: Archae - 0; Bacteria - 2; Metazoa - 679; Fungi - 77; Plants - 311; Viruses - 11; Other Eukaryotes - 196 (source: NCBI BLink).  protein_id AT2G01275.2p  transcript_id AT2G01275.2  protein_id AT2G01275.2p  transcript_id AT2G01275.2  
At2g01280	chr2:000145676	0.0	W/145676-145737,145836-145921,145992-146048,146117-146205,146277-146353,146433-146489,146602-146714,146856-146944,147028-147114,147208-147288,147370-147513,147612-147780,147866-147954,148053-148133,148207-148374,148454-148516,148611-148784	AT2G01280.1  CDS  gene_syn F10A8.16, F10A8_16, MEE65, maternal effect embryo arrest 65  gene MEE65  go_component nucleus|GO:0005634||IEA  go_component transcription factor complex|GO:0005667||IEA  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function RNA polymerase II transcription factor activity|GO:0003702||ISS  go_function cation:chloride symporter activity|GO:0015377||ISS  product MEE65 (maternal effect embryo arrest 65); RNA polymerase II transcription factor/ cation:chloride symporter  note maternal effect embryo arrest 65 (MEE65); FUNCTIONS IN: RNA polymerase II transcription factor activity, cation:chloride symporter activity; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: transcription factor complex, nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin (InterPro:IPR006670), Brf1-like TBP-binding (InterPro:IPR011665); BEST Arabidopsis thaliana protein match is: RNA polymerase II transcription factor/ protein binding / transcription activator/ transcription regulator/ translation initiation factor/ zinc ion binding (TAIR:AT3G09360.1); Has 3709 Blast hits to 2744 proteins in 382 species: Archae - 326; Bacteria - 200; Metazoa - 1082; Fungi - 375; Plants - 109; Viruses - 60; Other Eukaryotes - 1557 (source: NCBI BLink).  protein_id AT2G01280.1p  transcript_id AT2G01280.1  protein_id AT2G01280.1p  transcript_id AT2G01280.1  
At2g01290	chr2:000149192	0.0	C/149192-149989	AT2G01290.1  CDS  gene_syn F10A8.17, F10A8_17  go_process 5-phosphoribose 1-diphosphate biosynthetic process|GO:0006015||IEA  go_process pentose-phosphate shunt, non-oxidative branch|GO:0009052||IEA  go_process reductive pentose-phosphate cycle|GO:0019253||IEA  go_process D-ribose catabolic process|GO:0019303||IEA  go_process glucose catabolic process to lactate and acetate|GO:0019658||IEA  go_function ribose-5-phosphate isomerase activity|GO:0004751||IEA  go_component cytoplasm|GO:0005737|17059404|IDA  product ribose-5-phosphate isomerase  note ribose-5-phosphate isomerase; FUNCTIONS IN: ribose-5-phosphate isomerase activity; INVOLVED IN: glucose catabolic process to lactate and acetate, 5-phosphoribose 1-diphosphate biosynthetic process, reductive pentose-phosphate cycle, D-ribose catabolic process, pentose-phosphate shunt, non-oxidative branch; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribose 5-phosphate isomerase (InterPro:IPR004788); BEST Arabidopsis thaliana protein match is: RSW10 (RADIAL SWELLING 10); ribose-5-phosphate isomerase (TAIR:AT1G71100.1); Has 3193 Blast hits to 3193 proteins in 1122 species: Archae - 153; Bacteria - 1919; Metazoa - 91; Fungi - 101; Plants - 85; Viruses - 0; Other Eukaryotes - 844 (source: NCBI BLink).  protein_id AT2G01290.1p  transcript_id AT2G01290.1  protein_id AT2G01290.1p  transcript_id AT2G01290.1  
At2g01300	chr2:000151221	0.0	C/151221-151691	AT2G01300.1  CDS  gene_syn F10A8.18, F10A8_18  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15010.1); Has 45 Blast hits to 44 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G01300.1p  transcript_id AT2G01300.1  protein_id AT2G01300.1p  transcript_id AT2G01300.1  
At2g01310	chr2:000152481	0.0	C/152481-152642	AT2G01310.1  CDS  gene_syn F10A8.19, F10A8_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 23 Blast hits to 23 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G01310.1p  transcript_id AT2G01310.1  protein_id AT2G01310.1p  transcript_id AT2G01310.1  
At2g01320	chr2:000157806	0.0	C/157806-158063,157509-157699,157279-157429,157050-157182,156760-156961,156384-156660,155940-156071,155621-155841,155240-155452,155061-155145,154669-154983	AT2G01320.1  CDS  gene_syn F10A8.20, F10A8_20  go_component chloroplast|GO:0009507|18431481|IDA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ABC transporter family protein  note ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT3G21090.1); Has 227506 Blast hits to 208676 proteins in 2622 species: Archae - 4252; Bacteria - 158500; Metazoa - 7382; Fungi - 4471; Plants - 2613; Viruses - 18; Other Eukaryotes - 50270 (source: NCBI BLink).  protein_id AT2G01320.1p  transcript_id AT2G01320.1  protein_id AT2G01320.1p  transcript_id AT2G01320.1  
At2g01320	chr2:000157806	0.0	C/157806-158063,157509-157699,157279-157429,157050-157182,156760-156961,156384-156660,155940-156071,155621-155841,155240-155452,155061-155145,154669-154983	AT2G01320.4  CDS  gene_syn F10A8.20, F10A8_20  go_component chloroplast|GO:0009507|18431481|IDA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ABC transporter family protein  note ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT3G21090.1); Has 227506 Blast hits to 208676 proteins in 2622 species: Archae - 4252; Bacteria - 158500; Metazoa - 7382; Fungi - 4471; Plants - 2613; Viruses - 18; Other Eukaryotes - 50270 (source: NCBI BLink).  protein_id AT2G01320.4p  transcript_id AT2G01320.4  protein_id AT2G01320.4p  transcript_id AT2G01320.4  
At2g01320	chr2:000157806	0.0	C/157806-158063,157509-157699,157279-157429,157050-157182,156760-156961,156384-156660,155940-156071,155621-155841,155240-155452,155061-155145,154677-154983,154487-154500	AT2G01320.2  CDS  gene_syn F10A8.20, F10A8_20  go_component chloroplast|GO:0009507|18431481|IDA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ABC transporter family protein  note ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT3G21090.1); Has 227389 Blast hits to 208575 proteins in 2622 species: Archae - 4247; Bacteria - 158384; Metazoa - 7388; Fungi - 4469; Plants - 2613; Viruses - 18; Other Eukaryotes - 50270 (source: NCBI BLink).  protein_id AT2G01320.2p  transcript_id AT2G01320.2  protein_id AT2G01320.2p  transcript_id AT2G01320.2  
At2g01320	chr2:000157806	0.0	C/157806-158063,157509-157699,157279-157429,157050-157182,156760-156961,156384-156660,155940-156071,155621-155841,155240-155452,155061-155145,154677-154983,154487-154503	AT2G01320.3  CDS  gene_syn F10A8.20, F10A8_20  go_component chloroplast|GO:0009507|18431481|IDA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ABC transporter family protein  note ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT3G21090.1); Has 227389 Blast hits to 208575 proteins in 2622 species: Archae - 4247; Bacteria - 158384; Metazoa - 7388; Fungi - 4469; Plants - 2613; Viruses - 18; Other Eukaryotes - 50270 (source: NCBI BLink).  protein_id AT2G01320.3p  transcript_id AT2G01320.3  protein_id AT2G01320.3p  transcript_id AT2G01320.3  
At2g01330	chr2:000160042	0.0	C/160042-160184,159771-159957,159275-159697,158761-159174,158417-158674	AT2G01330.1  CDS  gene_syn F10A8.21, F10A8_21  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G18060.1); Has 29392 Blast hits to 13678 proteins in 521 species: Archae - 36; Bacteria - 5204; Metazoa - 11968; Fungi - 5488; Plants - 2303; Viruses - 0; Other Eukaryotes - 4393 (source: NCBI BLink).  protein_id AT2G01330.1p  transcript_id AT2G01330.1  protein_id AT2G01330.1p  transcript_id AT2G01330.1  
At2g01340	chr2:000164014	0.0	W/164014-164187,164293-164709,165012-165068	AT2G01340.1  CDS  gene_syn F10A8.22, F10A8_22  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G71015.1); Has 55 Blast hits to 55 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G01340.1p  transcript_id AT2G01340.1  protein_id AT2G01340.1p  transcript_id AT2G01340.1  
At2g01350	chr2:000166723	0.0	C/166723-166842,166491-166637,166200-166283,165915-166067,165652-165828,165512-165579,165332-165428	AT2G01350.2  CDS  gene_syn F10A8.23, F10A8_23, QPT, QUINOLINATE PHOSHORIBOSYLTRANSFERASE  gene QPT  function At2g01350 encodes quinolinate phosphoribosyl transferase involved in NAD biosynthesis as shown by heterologous expression in E. coli.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|16698895|IDA  go_process NAD biosynthetic process|GO:0009435|16698895|IGI  go_process NAD biosynthetic process|GO:0009435|16698895|IMP  go_function nicotinate-nucleotide diphosphorylase (carboxylating) activity|GO:0004514|16698895|IGI  go_function nicotinate-nucleotide diphosphorylase (carboxylating) activity|GO:0004514|16698895|IMP  go_function nicotinate-nucleotide diphosphorylase (carboxylating) activity|GO:0004514||ISS  product QPT (QUINOLINATE PHOSHORIBOSYLTRANSFERASE); nicotinate-nucleotide diphosphorylase (carboxylating)  note QUINOLINATE PHOSHORIBOSYLTRANSFERASE (QPT); FUNCTIONS IN: nicotinate-nucleotide diphosphorylase (carboxylating) activity; INVOLVED IN: NAD biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Nicotinate-nucleotide pyrophosphorylase (InterPro:IPR004393), Quinolinate phosphoribosyl transferase (InterPro:IPR002638); Has 4138 Blast hits to 4138 proteins in 1091 species: Archae - 119; Bacteria - 2063; Metazoa - 55; Fungi - 84; Plants - 31; Viruses - 0; Other Eukaryotes - 1786 (source: NCBI BLink).  protein_id AT2G01350.2p  transcript_id AT2G01350.2  protein_id AT2G01350.2p  transcript_id AT2G01350.2  
At2g01350	chr2:000166935	0.0	C/166935-167058,166723-166856,166491-166637,166200-166283,165915-166067,165652-165828,165512-165579,165332-165428	AT2G01350.4  CDS  gene_syn F10A8.23, F10A8_23, QPT, QUINOLINATE PHOSHORIBOSYLTRANSFERASE  gene QPT  function At2g01350 encodes quinolinate phosphoribosyl transferase involved in NAD biosynthesis as shown by heterologous expression in E. coli.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|16698895|IDA  go_process NAD biosynthetic process|GO:0009435|16698895|IGI  go_process NAD biosynthetic process|GO:0009435|16698895|IMP  go_function nicotinate-nucleotide diphosphorylase (carboxylating) activity|GO:0004514|16698895|IGI  go_function nicotinate-nucleotide diphosphorylase (carboxylating) activity|GO:0004514|16698895|IMP  go_function nicotinate-nucleotide diphosphorylase (carboxylating) activity|GO:0004514||ISS  product QPT (QUINOLINATE PHOSHORIBOSYLTRANSFERASE); nicotinate-nucleotide diphosphorylase (carboxylating)  note QUINOLINATE PHOSHORIBOSYLTRANSFERASE (QPT); FUNCTIONS IN: nicotinate-nucleotide diphosphorylase (carboxylating) activity; INVOLVED IN: NAD biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Nicotinate-nucleotide pyrophosphorylase (InterPro:IPR004393), Quinolinate phosphoribosyl transferase (InterPro:IPR002638); Has 4187 Blast hits to 4187 proteins in 1092 species: Archae - 119; Bacteria - 2066; Metazoa - 55; Fungi - 84; Plants - 32; Viruses - 0; Other Eukaryotes - 1831 (source: NCBI BLink).  protein_id AT2G01350.4p  transcript_id AT2G01350.4  protein_id AT2G01350.4p  transcript_id AT2G01350.4  
At2g01350	chr2:000167160	0.0	C/167160-167209,166935-167071,166723-166856,166491-166619,166200-166283,165915-166067,165652-165828,165512-165579,165332-165428	AT2G01350.3  CDS  gene_syn F10A8.23, F10A8_23, QPT, QUINOLINATE PHOSHORIBOSYLTRANSFERASE  gene QPT  function At2g01350 encodes quinolinate phosphoribosyl transferase involved in NAD biosynthesis as shown by heterologous expression in E. coli.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|16698895|IDA  go_process NAD biosynthetic process|GO:0009435|16698895|IGI  go_process NAD biosynthetic process|GO:0009435|16698895|IMP  go_function nicotinate-nucleotide diphosphorylase (carboxylating) activity|GO:0004514|16698895|IGI  go_function nicotinate-nucleotide diphosphorylase (carboxylating) activity|GO:0004514|16698895|IMP  go_function nicotinate-nucleotide diphosphorylase (carboxylating) activity|GO:0004514||ISS  product QPT (QUINOLINATE PHOSHORIBOSYLTRANSFERASE); nicotinate-nucleotide diphosphorylase (carboxylating)  note QUINOLINATE PHOSHORIBOSYLTRANSFERASE (QPT); FUNCTIONS IN: nicotinate-nucleotide diphosphorylase (carboxylating) activity; INVOLVED IN: NAD biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Nicotinate-nucleotide pyrophosphorylase (InterPro:IPR004393), Quinolinate phosphoribosyl transferase (InterPro:IPR002638); Has 4152 Blast hits to 4152 proteins in 1092 species: Archae - 119; Bacteria - 2059; Metazoa - 55; Fungi - 84; Plants - 32; Viruses - 0; Other Eukaryotes - 1803 (source: NCBI BLink).  protein_id AT2G01350.3p  transcript_id AT2G01350.3  protein_id AT2G01350.3p  transcript_id AT2G01350.3  
At2g01350	chr2:000167160	0.0	C/167160-167209,166935-167071,166723-166856,166491-166637,166200-166283,165915-166067,165652-165828,165512-165579,165332-165428	AT2G01350.1  CDS  gene_syn F10A8.23, F10A8_23, QPT, QUINOLINATE PHOSHORIBOSYLTRANSFERASE  gene QPT  function At2g01350 encodes quinolinate phosphoribosyl transferase involved in NAD biosynthesis as shown by heterologous expression in E. coli.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|16698895|IDA  go_process NAD biosynthetic process|GO:0009435|16698895|IGI  go_process NAD biosynthetic process|GO:0009435|16698895|IMP  go_function nicotinate-nucleotide diphosphorylase (carboxylating) activity|GO:0004514|16698895|IGI  go_function nicotinate-nucleotide diphosphorylase (carboxylating) activity|GO:0004514|16698895|IMP  go_function nicotinate-nucleotide diphosphorylase (carboxylating) activity|GO:0004514||ISS  product QPT (QUINOLINATE PHOSHORIBOSYLTRANSFERASE); nicotinate-nucleotide diphosphorylase (carboxylating)  note QUINOLINATE PHOSHORIBOSYLTRANSFERASE (QPT); FUNCTIONS IN: nicotinate-nucleotide diphosphorylase (carboxylating) activity; INVOLVED IN: NAD biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Nicotinate-nucleotide pyrophosphorylase (InterPro:IPR004393), Quinolinate phosphoribosyl transferase (InterPro:IPR002638); Has 4187 Blast hits to 4187 proteins in 1092 species: Archae - 119; Bacteria - 2066; Metazoa - 55; Fungi - 84; Plants - 32; Viruses - 0; Other Eukaryotes - 1831 (source: NCBI BLink).  protein_id AT2G01350.1p  transcript_id AT2G01350.1  protein_id AT2G01350.1p  transcript_id AT2G01350.1  
At2g01360	chr2:000168003	0.0	W/168003-168479	AT2G01360.1  CDS  gene_syn F10A8.24, F10A8_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G01390.1); Has 188 Blast hits to 187 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 186; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G01360.1p  transcript_id AT2G01360.1  protein_id AT2G01360.1p  transcript_id AT2G01360.1  
At2g01370	chr2:000168791	0.0	C/168791-169549	AT2G01370.1  CDS  gene_syn F10A8.25, F10A8_25  go_process biological_process|GO:0008150||ND  go_function transcription regulator activity|GO:0030528|12535344|TAS  product DNA-binding storekeeper protein-related  note DNA-binding storekeeper protein-related; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55950.1); Has 145 Blast hits to 145 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 141; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G01370.1p  transcript_id AT2G01370.1  protein_id AT2G01370.1p  transcript_id AT2G01370.1  
At2g01372	chr2:000169967	0.0	C/169967-170613	AT2G01372.1  pseudogenic_transcript  pseudo  function Pseudogene of AT3G13062  
At2g01390	chr2:000172256	0.0	W/172256-172976,173125-174137	AT2G01390.1  CDS  gene_syn F10A8.29  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01360.1); Has 14425 Blast hits to 4783 proteins in 149 species: Archae - 5; Bacteria - 2; Metazoa - 172; Fungi - 160; Plants - 13608; Viruses - 0; Other Eukaryotes - 478 (source: NCBI BLink).  protein_id AT2G01390.1p  transcript_id AT2G01390.1  protein_id AT2G01390.1p  transcript_id AT2G01390.1  
At2g01400	chr2:000174315	0.0	W/174315-174434,174760-175080	AT2G01400.1  CDS  gene_syn F10A8.4  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; Has 13 Blast hits to 13 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G01400.1p  transcript_id AT2G01400.1  protein_id AT2G01400.1p  transcript_id AT2G01400.1  
At2g01410	chr2:000175209	0.0	C/175209-176372	AT2G01410.1  CDS  gene_syn F10A8.30  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16760.1); Has 77 Blast hits to 77 proteins in 22 species: Archae - 0; Bacteria - 32; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G01410.1p  transcript_id AT2G01410.1  protein_id AT2G01410.1p  transcript_id AT2G01410.1  
At2g01420	chr2:000182005	0.0	C/182005-183199,181580-181847,181355-181440,180820-180977,180649-180725,180478-180544	AT2G01420.2  CDS  gene_syn AUXIN TRANSPORTER SPLICE VARIANT B, F10A8.27, PIN-FORMED 4, PIN4  gene PIN4  function Encodes a putative auxin efflux carrier that is localized in developing and mature root meristems. It is involved in the maintenance of embryonic auxin gradients. A role for AtPIN4 in generating a sink for auxin below the quiescent center of the root meristem that is essential for auxin distribution and patterning is proposed. In the root, PIN4 is detected around the quiescent center and cells surrounding it, and localizes basally in provascular cells. PIN4 expression is upregulated in brassinosteroid-insensitive mutant (PMID 16141452).  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process pattern specification process|GO:0007389|15635403|IGI  go_process auxin polar transport|GO:0009926|11893337|IMP  go_process auxin polar transport|GO:0009926|16601150|IMP  go_process auxin polar transport|GO:0009926||ISS  go_process root development|GO:0048364|11893337|IMP  go_function transporter activity|GO:0005215||ISS  go_function auxin:hydrogen symporter activity|GO:0009672||ISS  product PIN4 (PIN-FORMED 4); auxin:hydrogen symporter/ transporter  note PIN-FORMED 4 (PIN4); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity; INVOLVED IN: root development, auxin polar transport, pattern specification process; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: PIN3 (PIN-FORMED 3); auxin:hydrogen symporter/ transporter (TAIR:AT1G70940.1); Has 1049 Blast hits to 960 proteins in 285 species: Archae - 27; Bacteria - 521; Metazoa - 11; Fungi - 10; Plants - 252; Viruses - 2; Other Eukaryotes - 226 (source: NCBI BLink).  protein_id AT2G01420.2p  transcript_id AT2G01420.2  protein_id AT2G01420.2p  transcript_id AT2G01420.2  
At2g01420	chr2:000182017	0.0	C/182017-183199,181580-181847,181355-181440,180820-180977,180649-180725,180478-180544	AT2G01420.1  CDS  gene_syn AUXIN TRANSPORTER SPLICE VARIANT B, F10A8.27, PIN-FORMED 4, PIN4  gene PIN4  function Encodes a putative auxin efflux carrier that is localized in developing and mature root meristems. It is involved in the maintenance of embryonic auxin gradients. A role for AtPIN4 in generating a sink for auxin below the quiescent center of the root meristem that is essential for auxin distribution and patterning is proposed. In the root, PIN4 is detected around the quiescent center and cells surrounding it, and localizes basally in provascular cells. PIN4 expression is upregulated in brassinosteroid-insensitive mutant (PMID 16141452).  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process pattern specification process|GO:0007389|15635403|IGI  go_process auxin polar transport|GO:0009926|11893337|IMP  go_process auxin polar transport|GO:0009926|16601150|IMP  go_process auxin polar transport|GO:0009926||ISS  go_process root development|GO:0048364|11893337|IMP  go_function transporter activity|GO:0005215||ISS  go_function auxin:hydrogen symporter activity|GO:0009672||ISS  product PIN4 (PIN-FORMED 4); auxin:hydrogen symporter/ transporter  note PIN-FORMED 4 (PIN4); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity; INVOLVED IN: root development, auxin polar transport, pattern specification process; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: PIN3 (PIN-FORMED 3); auxin:hydrogen symporter/ transporter (TAIR:AT1G70940.1); Has 1037 Blast hits to 946 proteins in 281 species: Archae - 27; Bacteria - 521; Metazoa - 5; Fungi - 10; Plants - 250; Viruses - 0; Other Eukaryotes - 224 (source: NCBI BLink).  protein_id AT2G01420.1p  transcript_id AT2G01420.1  protein_id AT2G01420.1p  transcript_id AT2G01420.1  
At2g01430	chr2:000190072	0.0	C/190072-190369,189598-189788,189398-189477,187798-188056	AT2G01430.1  CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17, ATHB-17, ATHB17, F2I9.5, F2I9_5  gene ATHB17  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ATHB17 (ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17); transcription factor  note ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17 (ATHB17); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ATHB18 (Arabidopsis thaliana homeobox-leucine zipper protein 18); DNA binding / transcription factor (TAIR:AT1G70920.1); Has 6589 Blast hits to 6579 proteins in 451 species: Archae - 0; Bacteria - 0; Metazoa - 4898; Fungi - 193; Plants - 1400; Viruses - 4; Other Eukaryotes - 94 (source: NCBI BLink).  protein_id AT2G01430.1p  transcript_id AT2G01430.1  protein_id AT2G01430.1p  transcript_id AT2G01430.1  
At2g01440	chr2:000199024	0.0	C/199024-199056,198856-198926,198643-198778,198082-198567,197886-197998,197448-197682,197046-197209,196699-196780,196492-196581,196157-196390,195882-195953,195594-195746,195374-195517,195009-195167,194820-194903,194127-194699,193950-194042	AT2G01440.1  CDS  gene_syn F2I9.6, F2I9_6  go_process DNA repair|GO:0006281||IEA  go_process DNA recombination|GO:0006310||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function ATP-dependent DNA helicase activity|GO:0004003||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function ATP-dependent helicase activity|GO:0008026||ISS  product ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding  note ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding; FUNCTIONS IN: ATP-dependent DNA helicase activity, helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: DNA repair, DNA recombination; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA helicase, ATP-dependent, RecG (InterPro:IPR004609), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (TAIR:AT3G02060.2); Has 15985 Blast hits to 15966 proteins in 1600 species: Archae - 209; Bacteria - 7309; Metazoa - 1149; Fungi - 639; Plants - 288; Viruses - 12; Other Eukaryotes - 6379 (source: NCBI BLink).  protein_id AT2G01440.1p  transcript_id AT2G01440.1  protein_id AT2G01440.1p  transcript_id AT2G01440.1  
At2g01450	chr2:000201605	0.0	C/201605-202010,201361-201488,201184-201243,200948-201097,200637-200792,200411-200548,200229-200308,200039-200146,199722-199956	AT2G01450.1  CDS  gene_syn ARABIDOPSIS THALIANA MAP KINASE 17, ATMPK17, F2I9.7, F2I9_7  gene ATMPK17  function member of MAP Kinase  go_process signal transduction|GO:0007165|12119167|IC  go_function MAP kinase activity|GO:0004707|11544109|ISS  go_function MAP kinase activity|GO:0004707|12119167|ISS  product ATMPK17; MAP kinase  note ATMPK17; FUNCTIONS IN: MAP kinase activity; INVOLVED IN: signal transduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: MPK9 (MAP KINASE 9); MAP kinase (TAIR:AT3G18040.1); Has 82687 Blast hits to 81886 proteins in 2309 species: Archae - 45; Bacteria - 6860; Metazoa - 35881; Fungi - 7781; Plants - 15853; Viruses - 448; Other Eukaryotes - 15819 (source: NCBI BLink).  protein_id AT2G01450.1p  transcript_id AT2G01450.1  protein_id AT2G01450.1p  transcript_id AT2G01450.1  
At2g01450	chr2:000201605	0.0	C/201605-202010,201361-201488,201184-201243,200948-201097,200637-200792,200411-200548,200229-200308,200039-200146,199722-199956	AT2G01450.2  CDS  gene_syn ARABIDOPSIS THALIANA MAP KINASE 17, ATMPK17, F2I9.7, F2I9_7  gene ATMPK17  function member of MAP Kinase  go_process signal transduction|GO:0007165|12119167|IC  go_function MAP kinase activity|GO:0004707|11544109|ISS  go_function MAP kinase activity|GO:0004707|12119167|ISS  product ATMPK17; MAP kinase  note ATMPK17; FUNCTIONS IN: MAP kinase activity; INVOLVED IN: signal transduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: MPK9 (MAP KINASE 9); MAP kinase (TAIR:AT3G18040.1); Has 82687 Blast hits to 81886 proteins in 2309 species: Archae - 45; Bacteria - 6860; Metazoa - 35881; Fungi - 7781; Plants - 15853; Viruses - 448; Other Eukaryotes - 15819 (source: NCBI BLink).  protein_id AT2G01450.2p  transcript_id AT2G01450.2  protein_id AT2G01450.2p  transcript_id AT2G01450.2  
At2g01450	chr2:000201605	0.0	C/201605-202010,201361-201488,201184-201243,200948-201097,200637-200792,200411-200548,200229-200308,200039-200146,199722-199956	AT2G01450.3  CDS  gene_syn ARABIDOPSIS THALIANA MAP KINASE 17, ATMPK17, F2I9.7, F2I9_7  gene ATMPK17  function member of MAP Kinase  go_process signal transduction|GO:0007165|12119167|IC  go_function MAP kinase activity|GO:0004707|11544109|ISS  go_function MAP kinase activity|GO:0004707|12119167|ISS  product ATMPK17; MAP kinase  note ATMPK17; FUNCTIONS IN: MAP kinase activity; INVOLVED IN: signal transduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: MPK9 (MAP KINASE 9); MAP kinase (TAIR:AT3G18040.1); Has 82687 Blast hits to 81886 proteins in 2309 species: Archae - 45; Bacteria - 6860; Metazoa - 35881; Fungi - 7781; Plants - 15853; Viruses - 448; Other Eukaryotes - 15819 (source: NCBI BLink).  protein_id AT2G01450.3p  transcript_id AT2G01450.3  protein_id AT2G01450.3p  transcript_id AT2G01450.3  
At2g01450	chr2:000201605	0.0	C/201605-202010,201361-201488,201184-201243,200948-201097,200637-200792,200411-200548,200229-200308,200039-200146,199722-199956	AT2G01450.4  CDS  gene_syn ARABIDOPSIS THALIANA MAP KINASE 17, ATMPK17, F2I9.7, F2I9_7  gene ATMPK17  function member of MAP Kinase  go_process signal transduction|GO:0007165|12119167|IC  go_function MAP kinase activity|GO:0004707|11544109|ISS  go_function MAP kinase activity|GO:0004707|12119167|ISS  product ATMPK17; MAP kinase  note ATMPK17; FUNCTIONS IN: MAP kinase activity; INVOLVED IN: signal transduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: MPK9 (MAP KINASE 9); MAP kinase (TAIR:AT3G18040.1); Has 82687 Blast hits to 81886 proteins in 2309 species: Archae - 45; Bacteria - 6860; Metazoa - 35881; Fungi - 7781; Plants - 15853; Viruses - 448; Other Eukaryotes - 15819 (source: NCBI BLink).  protein_id AT2G01450.4p  transcript_id AT2G01450.4  protein_id AT2G01450.4p  transcript_id AT2G01450.4  
At2g01460	chr2:000206136	0.0	W/206136-206252,206329-206441,206522-206648,206736-206831,206904-206972,207052-207186,207259-207327,207404-207447,207536-207695,208034-208198,208278-208370,208436-208520,208581-208856,208988-209085,209200-209242,209336-209493,209591-209732,209825-209859,210034-210102,210302-210376,210455-210631,210728-210813,210917-210975,211093-211190,211289-211402,211492-211611,211700-211765	AT2G01460.1  CDS  gene_syn F2I9.8, F2I9_8  go_component cellular_component|GO:0005575||ND  go_process biosynthetic process|GO:0009058||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product ATP binding / kinase  note ATP binding / kinase; FUNCTIONS IN: kinase activity, ATP binding; INVOLVED IN: biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: phosphoribulokinase/uridine kinase family protein (TAIR:AT1G26190.1); Has 1426 Blast hits to 1171 proteins in 476 species: Archae - 7; Bacteria - 966; Metazoa - 112; Fungi - 108; Plants - 88; Viruses - 2; Other Eukaryotes - 143 (source: NCBI BLink).  protein_id AT2G01460.1p  transcript_id AT2G01460.1  protein_id AT2G01460.1p  transcript_id AT2G01460.1  
At2g01470	chr2:000214157	0.0	C/214157-214435,213952-214046,213639-213783,213455-213546,213225-213321,213054-213129,212841-212961,212640-212756,212411-212478,212215-212306	AT2G01470.1  CDS  gene_syn ATSEC12, F2I9.9, F2I9_9, SEC12P-LIKE 2 PROTEIN, STL2P  gene STL2P  function Sec12p-like protein (GTP exchange protein) that functionally complements yeast sec12 null mutant. Protein is localized to the ER.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component integral to endoplasmic reticulum membrane|GO:0030176|9159953|IDA  go_process ER to Golgi vesicle-mediated transport|GO:0006888|9159953|TAS  go_function nucleotide binding|GO:0000166||ISS  product STL2P (SEC12P-LIKE 2 PROTEIN); nucleotide binding  note SEC12P-LIKE 2 PROTEIN (STL2P); FUNCTIONS IN: nucleotide binding; INVOLVED IN: ER to Golgi vesicle-mediated transport; LOCATED IN: integral to endoplasmic reticulum membrane, endoplasmic reticulum, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein / St12p protein, putative (TAIR:AT5G50650.1); Has 4737 Blast hits to 2851 proteins in 259 species: Archae - 20; Bacteria - 1994; Metazoa - 886; Fungi - 945; Plants - 208; Viruses - 0; Other Eukaryotes - 684 (source: NCBI BLink).  protein_id AT2G01470.1p  transcript_id AT2G01470.1  protein_id AT2G01470.1p  transcript_id AT2G01470.1  
At2g01480	chr2:000216980	0.0	W/216980-217357,217925-217994,218196-218263,218376-218464,218554-218751,218926-219130,219258-219425,219564-219731,219812-220002,220173-220341	AT2G01480.1  CDS  gene_syn F2I9.10, F2I9_10  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14970.1); Has 431 Blast hits to 423 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 431; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G01480.1p  transcript_id AT2G01480.1  protein_id AT2G01480.1p  transcript_id AT2G01480.1  
At2g01490	chr2:000221316	0.0	W/221316-221370,221466-221587,221667-221727,222077-222145,222225-222343,222466-222613,222711-222855,222954-223040,223142-223187	AT2G01490.1  CDS  gene_syn F2I9.11, F2I9_11  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function phytanoyl-CoA dioxygenase activity|GO:0048244||ISS  product phytanoyl-CoA dioxygenase (PhyH) family protein  note phytanoyl-CoA dioxygenase (PhyH) family protein; FUNCTIONS IN: phytanoyl-CoA dioxygenase activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phytanoyl-CoA dioxygenase (InterPro:IPR008775); Has 2632 Blast hits to 2624 proteins in 223 species: Archae - 0; Bacteria - 300; Metazoa - 320; Fungi - 67; Plants - 32; Viruses - 0; Other Eukaryotes - 1913 (source: NCBI BLink).  protein_id AT2G01490.1p  transcript_id AT2G01490.1  protein_id AT2G01490.1p  transcript_id AT2G01490.1  
At2g01500	chr2:000225919	0.0	C/225919-225997,225502-225846,225226-225293,224470-224793	AT2G01500.1  CDS  gene_syn F2I9.12, F2I9_12, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE 9, HOS9, PFS2, PRETTY FEW SEEDS 2, WOX6, WUSCHEL RELATED HOMEOBOX 6  gene PFS2  function PFS2 encodes a homeodomain gene that is a member of the WUS clade of transcription factors. It delays differentiation and maturation of primordia and regulates ovule patterning. The pfs2 mutant exhibits developmental defects in the maternal integuments and gametophyte, specifically, the boundary between the chalaza and the nucellus shifted towards the distal end of pfs2 ovule primordia. In addition, leaves displayed curling and petals were wavy and crenulated. Overexpression of PFS2 affects floral organ and leaf development. Single- and double-mutant analyses reveal that PFS2 activity represses AGAMOUS expression in young floral primordia. Also involved in regulation of response to low temperature.  go_component nucleus|GO:0005634|15205481|IDA  go_component primary endosperm nucleus|GO:0048353|15659481|IDA  go_process response to cold|GO:0009409||NAS  go_process leaf morphogenesis|GO:0009965|15659481|IMP  go_process cell growth|GO:0016049|15659481|IMP  go_process embryo sac morphogenesis|GO:0048314|15659481|IMP  go_process leaf development|GO:0048366|15659481|IMP  go_process floral organ development|GO:0048437|15659481|IMP  go_process petal morphogenesis|GO:0048446|15659481|IMP  go_process ovule morphogenesis|GO:0048482|15058443|IMP  go_process cell division|GO:0051301|15659481|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|15205481|ISS  go_function transcription factor activity|GO:0003700||NAS  product PFS2 (PRETTY FEW SEEDS 2); transcription factor  note PRETTY FEW SEEDS 2 (PFS2); FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 9 processes; LOCATED IN: primary endosperm nucleus, nucleus; EXPRESSED IN: 15 plant structures; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WOX1 (WUSCHEL related homeobox 1); transcription factor (TAIR:AT3G18010.1); Has 321 Blast hits to 321 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 319; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G01500.1p  transcript_id AT2G01500.1  protein_id AT2G01500.1p  transcript_id AT2G01500.1  
At2g01505	chr2:000228926	0.0	C/228926-229237	AT2G01505.1  CDS  gene_syn CLAVATA3/ESR-RELATED 16, CLE16  gene CLE16  function Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.  go_component apoplast|GO:0048046|11457943|RCA  go_process signal transduction|GO:0007165||ISS  go_function receptor binding|GO:0005102||ISS  go_function protein binding|GO:0005515|11457943|ISS  product CLE16 (CLAVATA3/ESR-RELATED 16); protein binding / receptor binding  note CLAVATA3/ESR-RELATED 16 (CLE16); FUNCTIONS IN: protein binding, receptor binding; INVOLVED IN: signal transduction; LOCATED IN: apoplast; Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G01505.1p  transcript_id AT2G01505.1  protein_id AT2G01505.1p  transcript_id AT2G01505.1  
At2g01510	chr2:000230752	0.0	C/230752-232506	AT2G01510.1  CDS  gene_syn F2I9.13, F2I9_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21065.1); Has 12725 Blast hits to 4903 proteins in 162 species: Archae - 0; Bacteria - 4; Metazoa - 79; Fungi - 57; Plants - 12325; Viruses - 0; Other Eukaryotes - 260 (source: NCBI BLink).  protein_id AT2G01510.1p  transcript_id AT2G01510.1  protein_id AT2G01510.1p  transcript_id AT2G01510.1  
At2g01520	chr2:000235992	0.0	W/235992-236178,236613-236881	AT2G01520.1  CDS  gene_syn F2I9.14, F2I9_14, MLP-LIKE PROTEIN 328, MLP328  gene MLP328  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_function copper ion binding|GO:0005507|16526091|IDA  go_component cellular_component|GO:0005575||ND  product MLP328 (MLP-LIKE PROTEIN 328); copper ion binding  note MLP-LIKE PROTEIN 328 (MLP328); FUNCTIONS IN: copper ion binding; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: MLP329 (MLP-LIKE PROTEIN 329); copper ion binding (TAIR:AT2G01530.1); Has 232 Blast hits to 210 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 232; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G01520.1p  transcript_id AT2G01520.1  protein_id AT2G01520.1p  transcript_id AT2G01520.1  
At2g01530	chr2:000239815	0.0	W/239815-240001,240081-240349	AT2G01530.1  CDS  gene_syn F2I9.15, F2I9_15, MLP-LIKE PROTEIN 329, MLP329  gene MLP329  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_function copper ion binding|GO:0005507|16526091|IDA  go_component cellular_component|GO:0005575||ND  product MLP329 (MLP-LIKE PROTEIN 329); copper ion binding  note MLP-LIKE PROTEIN 329 (MLP329); FUNCTIONS IN: copper ion binding; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: MLP328 (MLP-LIKE PROTEIN 328); copper ion binding (TAIR:AT2G01520.1); Has 219 Blast hits to 199 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 219; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G01530.1p  transcript_id AT2G01530.1  protein_id AT2G01530.1p  transcript_id AT2G01530.1  
At2g01540	chr2:000243120	0.0	C/243120-243233,242733-242828,242297-242629	AT2G01540.1  CDS  gene_syn F2I9.16, F2I9_16  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT1G70790.2); Has 2557 Blast hits to 2151 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 1514; Fungi - 391; Plants - 442; Viruses - 0; Other Eukaryotes - 210 (source: NCBI BLink).  protein_id AT2G01540.1p  transcript_id AT2G01540.1  protein_id AT2G01540.1p  transcript_id AT2G01540.1  
At2g01550	chr2:000243918	0.0	C/243918-249049	AT2G01550.1  mRNA_TE_gene  pseudo  gene_syn F2I9.17, F2I9_17  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 4.9e-48 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)  
At2g01554	chr2:000249687	0.0	W/249687-249774,249860-249924,250017-250181	AT2G01554.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70780.1); Has 15 Blast hits to 15 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G01554.1p  transcript_id AT2G01554.1  protein_id AT2G01554.1p  transcript_id AT2G01554.1  
At2g01560	chr2:000251744	0.0	C/251744-251806,251544-251649,251371-251451,251255-251290,251060-251179,250806-250976,250392-250720	AT2G01560.1  CDS  gene_syn F2I9.18, F2I9_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G45800.1); Has 49 Blast hits to 49 proteins in 20 species: Archae - 0; Bacteria - 3; Metazoa - 4; Fungi - 10; Plants - 25; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT2G01560.1p  transcript_id AT2G01560.1  protein_id AT2G01560.1p  transcript_id AT2G01560.1  
At2g01570	chr2:000255581	0.0	C/255581-257344	AT2G01570.1  CDS  gene_syn F2I9.19, F2I9_19, REPRESSOR OF GA, REPRESSOR OF GA1-3 1, RGA, RGA1  gene RGA1  function Member of the VHIID/DELLA regulatory family. Contains homopolymeric serine and threonine residues, a putative nuclear localization signal, leucine heptad repeats, and an LXXLL motif. Putative transcriptional regulator repressing the gibberellin response and integration of phytohormone signalling. DELLAs repress cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. RGA1 binds to PIF3 and inhibits its DNA binding activity and thus affects the expression of PIF3 regulated genes. RGA may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA. Involved in fruit and flower development.  go_component nucleus|GO:0005634|11449051|TAS  go_component nucleus|GO:0005634|9490740|IDA  go_process response to salt stress|GO:0009651|16400150|IGI  go_process response to ethylene stimulus|GO:0009723|16400150|IGI  go_process response to abscisic acid stimulus|GO:0009737|16400150|IGI  go_process gibberellic acid mediated signaling|GO:0009740|11449051|TAS  go_process seed germination|GO:0009845|17141619|IGI  go_process jasmonic acid mediated signaling pathway|GO:0009867|18450451|IGI  go_process negative regulation of gibberellic acid mediated signaling|GO:0009938|9215910|IGI  go_process seed dormancy|GO:0010162|17141619|IGI  go_process negative regulation of seed germination|GO:0010187|17449805|IGI  go_process response to far red light|GO:0010218|17449805|IEP  go_process hyperosmotic salinity response|GO:0042538|16400150|IGI  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process regulation of oxygen and reactive oxygen species metabolic process|GO:0080010|18450450|IGI  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11449051|TAS  go_function transcription factor activity|GO:0003700|17933900|IDA  go_function protein binding|GO:0005515|18216856|IPI  product RGA1 (REPRESSOR OF GA1-3 1); protein binding / transcription factor  note REPRESSOR OF GA1-3 1 (RGA1); FUNCTIONS IN: protein binding, transcription factor activity; INVOLVED IN: in 13 processes; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GAI (GIBBERELLIC ACID INSENSITIVE); transcription factor (TAIR:AT1G14920.1); Has 1597 Blast hits to 1563 proteins in 203 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 1587; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G01570.1p  transcript_id AT2G01570.1  protein_id AT2G01570.1p  transcript_id AT2G01570.1  
At2g01580	chr2:000265181	0.0	C/265181-265756	AT2G01580.1  CDS  gene_syn F2I9.20, F2I9_20  product unknown protein  note unknown protein; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G07510.2); Has 65 Blast hits to 65 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G01580.1p  transcript_id AT2G01580.1  protein_id AT2G01580.1p  transcript_id AT2G01580.1  
At2g01590	chr2:000266675	0.0	W/266675-266937,267035-267171,267255-267379	AT2G01590.1  CDS  gene_syn CHLORORESPIRATORY REDUCTION 3, CRR3, F2I9.21, F2I9_21  gene CRR3  function Likely a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located in the membrane fraction of chloroplast. Mutant has impaired NAD(P)H dehydrogenase activity.  go_component membrane|GO:0016020|17432890|IDA  go_component chloroplast|GO:0009507|17041026|IDA  go_component NAD(P)H dehydrogenase complex (plastoquinone)|GO:0010598|17041026|NAS  go_component membrane|GO:0016020|17041026|IDA  go_process photosynthetic electron transport in photosystem I|GO:0009773|17041026|TAS  go_function molecular_function|GO:0003674||ND  product CRR3 (CHLORORESPIRATORY REDUCTION 3)  note CHLORORESPIRATORY REDUCTION 3 (CRR3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast, NAD(P)H dehydrogenase complex (plastoquinone), membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; Has 8 Blast hits to 8 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G01590.1p  transcript_id AT2G01590.1  protein_id AT2G01590.1p  transcript_id AT2G01590.1  
At2g01600	chr2:000268975	0.0	W/268975-269064,269169-269238,269324-269421,269500-269638,269745-269872,269969-270061,270156-270206,270356-270421,270511-270576,270662-270742,270834-270914,271007-271183,271283-271361,271476-271591,271976-272356	AT2G01600.1  CDS  gene_syn F2I9.22, F2I9_22  go_component membrane|GO:0016020|17432890|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process clathrin coat assembly|GO:0048268||IEA  go_function phospholipid binding|GO:0005543||IEA  go_function phosphatidylinositol binding|GO:0005545||IEA  go_function clathrin binding|GO:0030276||IEA  go_function binding|GO:0005488||ISS  product epsin N-terminal homology (ENTH) domain-containing protein  note epsin N-terminal homology (ENTH) domain-containing protein; FUNCTIONS IN: phospholipid binding, clathrin binding, binding, phosphatidylinositol binding; INVOLVED IN: N-terminal protein myristoylation, clathrin coat assembly; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942), Clathrin adaptor, phosphoinositide-binding, GAT-like (InterPro:IPR014712); BEST Arabidopsis thaliana protein match is: epsin N-terminal homology (ENTH) domain-containing protein (TAIR:AT1G14910.1); Has 692 Blast hits to 673 proteins in 140 species: Archae - 0; Bacteria - 10; Metazoa - 279; Fungi - 125; Plants - 239; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT2G01600.1p  transcript_id AT2G01600.1  protein_id AT2G01600.1p  transcript_id AT2G01600.1  
At2g01610	chr2:000274124	0.0	C/274124-274792	AT2G01610.1  CDS  gene_syn T8O11.22, T8O11_22  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor (TAIR:AT1G14890.1); Has 464 Blast hits to 459 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 464; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G01610.1p  transcript_id AT2G01610.1  protein_id AT2G01610.1p  transcript_id AT2G01610.1  
At2g01620	chr2:000278204	0.0	W/278204-278536,278600-278836,278918-279226	AT2G01620.1  CDS  gene_syn MEE11, T8O11.21, T8O11_21, maternal effect embryo arrest 11  gene MEE11  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  product MEE11 (maternal effect embryo arrest 11)  note maternal effect embryo arrest 11 (MEE11); INVOLVED IN: embryonic development ending in seed dormancy; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G26000.1); Has 182 Blast hits to 178 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT2G01620.1p  transcript_id AT2G01620.1  protein_id AT2G01620.1p  transcript_id AT2G01620.1  
At2g01630	chr2:000281898	0.0	C/281898-281955,279936-281189,279804-279831,279541-279706	AT2G01630.1  CDS  gene_syn T8O11.20, T8O11_20  go_component plasma membrane|GO:0005886|17317660|IDA  go_component anchored to plasma membrane|GO:0046658|12805588|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative  note glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT1G66250.1); Has 1815 Blast hits to 1764 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 65; Plants - 1747; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G01630.1p  transcript_id AT2G01630.1  protein_id AT2G01630.1p  transcript_id AT2G01630.1  
At2g01630	chr2:000281898	0.0	C/281898-281955,280092-281189,279564-279583	AT2G01630.2  CDS  gene_syn T8O11.20, T8O11_20  go_component plasma membrane|GO:0005886|17317660|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative  note glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT1G66250.1); Has 1393 Blast hits to 1383 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 5; Plants - 1386; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G01630.2p  transcript_id AT2G01630.2  protein_id AT2G01630.2p  transcript_id AT2G01630.2  
At2g01640	chr2:000283085	0.0	W/283085-283104,283212-283270,283360-283409,283618-283766,283842-284034	AT2G01640.1  CDS  gene_syn T8O11.19, T8O11_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 18; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G01640.1p  transcript_id AT2G01640.1  protein_id AT2G01640.1p  transcript_id AT2G01640.1  
At2g01650	chr2:000285531	0.0	C/285531-286394,285167-285445,284851-285084	AT2G01650.1  CDS  gene_syn PLANT UBX DOMAIN-CONTAINING PROTEIN 2, PUX2, T8O11.18, T8O11_18  gene PUX2  function encodes a peripheral membrane protein that contains UBX domain and interacts with AtCDC48 in vitro and co-fractionates with membrane-associated but not soluble AtCDC48 in vivo.  go_component extrinsic to membrane|GO:0019898||NAS  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function zinc ion binding|GO:0008270||ISS  product PUX2 (PLANT UBX DOMAIN-CONTAINING PROTEIN 2); nucleic acid binding / zinc ion binding  note PLANT UBX DOMAIN-CONTAINING PROTEIN 2 (PUX2); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: extrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012), PUG (InterPro:IPR006567); Has 411 Blast hits to 411 proteins in 84 species: Archae - 0; Bacteria - 12; Metazoa - 252; Fungi - 14; Plants - 88; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT2G01650.1p  transcript_id AT2G01650.1  protein_id AT2G01650.1p  transcript_id AT2G01650.1  
At2g01660	chr2:000291717	0.0	C/291717-292496	AT2G01660.2  CDS  gene_syn PDLP6, PLASMODESMATA-LOCATED PROTEIN 6, T8O11.17, T8O11_17  gene PDLP6  function Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.  go_component plasmodesma|GO:0009506|18215111|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product PDLP6 (PLASMODESMATA-LOCATED PROTEIN 6)  note PLASMODESMATA-LOCATED PROTEIN 6 (PDLP6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasmodesma; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: PDLP7 (PLASMODESMATA-LOCATED PROTEIN 7) (TAIR:AT5G37660.2); Has 920 Blast hits to 836 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 920; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G01660.2p  transcript_id AT2G01660.2  protein_id AT2G01660.2p  transcript_id AT2G01660.2  
At2g01660	chr2:000291773	0.0	C/291773-292496,291156-291287,290973-290983	AT2G01660.1  CDS  gene_syn PDLP6, PLASMODESMATA-LOCATED PROTEIN 6, T8O11.17, T8O11_17  gene PDLP6  function Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.  go_component plasmodesma|GO:0009506|18215111|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product PDLP6 (PLASMODESMATA-LOCATED PROTEIN 6)  note PLASMODESMATA-LOCATED PROTEIN 6 (PDLP6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasmodesma; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: PDLP7 (PLASMODESMATA-LOCATED PROTEIN 7) (TAIR:AT5G37660.2); Has 915 Blast hits to 837 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 915; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G01660.1p  transcript_id AT2G01660.1  protein_id AT2G01660.1p  transcript_id AT2G01660.1  
At2g01667	chr2:000295455	0.0	W/295455-295556	AT2G01667.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G01667.1p  transcript_id AT2G01667.1  protein_id AT2G01667.1p  transcript_id AT2G01667.1  
At2g01670	chr2:000297733	0.0	C/297733-297818,297526-297631,297347-297430,297124-297252,296889-297032	AT2G01670.1  CDS  gene_syn Arabidopsis thaliana Nudix hydrolase homolog 17, T8O11.16, T8O11_16, atnudt17  gene atnudt17  go_function hydrolase activity|GO:0016787||IEA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product atnudt17 (Arabidopsis thaliana Nudix hydrolase homolog 17); hydrolase  note Arabidopsis thaliana Nudix hydrolase homolog 17 (atnudt17); FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), NUDIX hydrolase, core (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: atnudt18 (Arabidopsis thaliana Nudix hydrolase homolog 18); hydrolase (TAIR:AT1G14860.1); Has 671 Blast hits to 669 proteins in 184 species: Archae - 0; Bacteria - 183; Metazoa - 198; Fungi - 77; Plants - 132; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).  protein_id AT2G01670.1p  transcript_id AT2G01670.1  protein_id AT2G01670.1p  transcript_id AT2G01670.1  
At2g01680	chr2:000306597	0.0	W/306597-306918,307056-307465,307561-308427	AT2G01680.1  CDS  gene_syn T8O11.15, T8O11_15  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT1G07710.1); Has 30422 Blast hits to 14426 proteins in 498 species: Archae - 36; Bacteria - 1652; Metazoa - 16352; Fungi - 2182; Plants - 1476; Viruses - 164; Other Eukaryotes - 8560 (source: NCBI BLink).  protein_id AT2G01680.1p  transcript_id AT2G01680.1  protein_id AT2G01680.1p  transcript_id AT2G01680.1  
At2g01690	chr2:000313410	0.0	C/313410-313499,313197-313310,313014-313079,312738-312827,312533-312652,312421-312449,312184-312326,311992-312086,311740-311826,311515-311622,311332-311423,311164-311245,311007-311072,310766-310881,310564-310684,310225-310386,310009-310137,309861-309929,309472-309759,309144-309308	AT2G01690.1  CDS  gene_syn T8O11.14, T8O11_14  go_component plasma membrane|GO:0005886|17151019|IDA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); Has 5818 Blast hits to 4085 proteins in 258 species: Archae - 0; Bacteria - 93; Metazoa - 2108; Fungi - 746; Plants - 137; Viruses - 11; Other Eukaryotes - 2723 (source: NCBI BLink).  protein_id AT2G01690.1p  transcript_id AT2G01690.1  protein_id AT2G01690.1p  transcript_id AT2G01690.1  
At2g01690	chr2:000313410	0.0	C/313410-313499,313197-313310,313014-313079,312738-312827,312533-312652,312421-312452,312184-312326,311992-312086,311740-311826,311515-311622,311332-311423,311164-311245,311007-311072,310766-310881,310564-310684,310225-310386,310009-310137,309861-309929,309472-309759,309144-309308	AT2G01690.2  CDS  gene_syn T8O11.14, T8O11_14  go_component plasma membrane|GO:0005886|17151019|IDA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); Has 5822 Blast hits to 4096 proteins in 260 species: Archae - 0; Bacteria - 98; Metazoa - 2110; Fungi - 743; Plants - 135; Viruses - 11; Other Eukaryotes - 2725 (source: NCBI BLink).  protein_id AT2G01690.2p  transcript_id AT2G01690.2  protein_id AT2G01690.2p  transcript_id AT2G01690.2  
At2g01700	chr2:000314844	0.0	C/314844-315158	AT2G01700.1  mRNA_TE_gene  pseudo  gene_syn T8O11.13, T8O11_13  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G26860.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)  
At2g01710	chr2:000315836	0.0	W/315836-316771	AT2G01710.1  CDS  gene_syn T8O11.12, T8O11_12  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT5G64360.4); Has 5744 Blast hits to 5717 proteins in 1058 species: Archae - 51; Bacteria - 1836; Metazoa - 1675; Fungi - 356; Plants - 570; Viruses - 8; Other Eukaryotes - 1248 (source: NCBI BLink).  protein_id AT2G01710.1p  transcript_id AT2G01710.1  protein_id AT2G01710.1p  transcript_id AT2G01710.1  
At2g01720	chr2:000319912	0.0	C/319912-320016,319531-319575,318611-319242,318185-318332,317856-318035,317701-317769,317524-317613,317193-317318	AT2G01720.1  CDS  gene_syn T8O11.11, T8O11_11  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid glycosylation|GO:0006486||IEA  go_function dolichyl-diphosphooligosaccharide-protein glycotransferase activity|GO:0004579||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_function oligosaccharyl transferase activity|GO:0004576||ISS  product ribophorin I family protein  note ribophorin I family protein; FUNCTIONS IN: oligosaccharyl transferase activity, dolichyl-diphosphooligosaccharide-protein glycotransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: endoplasmic reticulum, plasma membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribophorin I (InterPro:IPR007676); BEST Arabidopsis thaliana protein match is: ribophorin I family protein (TAIR:AT1G76400.1); Has 285 Blast hits to 285 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 87; Plants - 31; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT2G01720.1p  transcript_id AT2G01720.1  protein_id AT2G01720.1p  transcript_id AT2G01720.1  
At2g01730	chr2:000320597	0.0	W/320597-320621,320720-320897,320984-321056,321157-321274,321371-321444,321541-321677,321773-321836,322005-322070,322161-322230,322373-322477,322681-322822,322934-323030,323153-323845	AT2G01730.1  CDS  gene_syn ATCPSF73-II, CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73 KDA SUBUNIT-II, EDA26, T8O11.10, T8O11_10, cleavage and polyadenylation specificity factor 73 kDa subunit-II, embryo sac development arrest 26  gene ATCPSF73-II  function a homolog of cleavage and polyadenylation specificity factor that plays an essential role in the development of female gametophyte and embryo  go_component nucleus|GO:0005634|16897494|IDA  go_process metabolic process|GO:0008152||ISS  go_process polar nucleus fusion|GO:0010197|15634699|IMP  go_function catalytic activity|GO:0003824||ISS  go_function protein binding|GO:0005515|16897494|IPI  product ATCPSF73-II (cleavage and polyadenylation specificity factor 73 kDa subunit-II); catalytic/ protein binding  note cleavage and polyadenylation specificity factor 73 kDa subunit-II (ATCPSF73-II); FUNCTIONS IN: protein binding, catalytic activity; INVOLVED IN: polar nucleus fusion, metabolic process; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: RNA-metabolising metallo-beta-lactamase (InterPro:IPR011108), Beta-lactamase-like (InterPro:IPR001279); BEST Arabidopsis thaliana protein match is: CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I); protein binding (TAIR:AT1G61010.3); Has 3266 Blast hits to 3240 proteins in 811 species: Archae - 301; Bacteria - 1439; Metazoa - 515; Fungi - 171; Plants - 90; Viruses - 0; Other Eukaryotes - 750 (source: NCBI BLink).  protein_id AT2G01730.1p  transcript_id AT2G01730.1  protein_id AT2G01730.1p  transcript_id AT2G01730.1  
At2g01735	chr2:000324499	0.0	W/324499-325001,325071-325190,325265-325397,325478-325636,325731-325895	AT2G01735.1  CDS  gene_syn RIE1, RING-FINGER PROTEIN FOR EMBRYOGENESIS  gene RIE1  function encodes a RING-H2 zinc finger protein essential for seed development.  go_component chloroplast|GO:0009507||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function zinc ion binding|GO:0008270||ISS  product RIE1 (RING-FINGER PROTEIN FOR EMBRYOGENESIS); protein binding / zinc ion binding  note RING-FINGER PROTEIN FOR EMBRYOGENESIS (RIE1); FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G68070.1); Has 6538 Blast hits to 6519 proteins in 216 species: Archae - 0; Bacteria - 6; Metazoa - 2226; Fungi - 488; Plants - 2711; Viruses - 36; Other Eukaryotes - 1071 (source: NCBI BLink).  protein_id AT2G01735.1p  transcript_id AT2G01735.1  protein_id AT2G01735.1p  transcript_id AT2G01735.1  
At2g01740	chr2:000326136	0.0	C/326136-327815	AT2G01740.1  CDS  gene_syn T8O11.9, T8O11_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G02150.1); Has 24237 Blast hits to 5941 proteins in 188 species: Archae - 5; Bacteria - 26; Metazoa - 625; Fungi - 501; Plants - 22055; Viruses - 0; Other Eukaryotes - 1025 (source: NCBI BLink).  protein_id AT2G01740.1p  transcript_id AT2G01740.1  protein_id AT2G01740.1p  transcript_id AT2G01740.1  
At2g01750	chr2:000328351	0.0	W/328351-328612,328783-328868,329491-329556,329649-329819,329918-330088,330188-330343,330452-330598,330723-330794,330891-331415,331509-331702,331809-331848	AT2G01750.1  CDS  gene_syn ATMAP70-3, T8O11.8, T8O11_8, microtubule-associated proteins 70-3  gene ATMAP70-3  function Encodes a microtubule associated protein (MAP70-3). Expressed in all tissues.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component microtubule|GO:0005874|15860013|ISS  go_process cytoskeleton organization|GO:0007010|15860013|TAS  go_function microtubule binding|GO:0008017|15860013|ISS  product ATMAP70-3 (microtubule-associated proteins 70-3); microtubule binding  note microtubule-associated proteins 70-3 (ATMAP70-3); FUNCTIONS IN: microtubule binding; INVOLVED IN: cytoskeleton organization; LOCATED IN: microtubule, plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Myosin II heavy chain-like (InterPro:IPR009768); BEST Arabidopsis thaliana protein match is: ATMAP70-4 (microtubule-associated proteins 70-4); microtubule binding (TAIR:AT1G14840.1); Has 26493 Blast hits to 16020 proteins in 1077 species: Archae - 296; Bacteria - 2292; Metazoa - 15203; Fungi - 1919; Plants - 951; Viruses - 146; Other Eukaryotes - 5686 (source: NCBI BLink).  protein_id AT2G01750.1p  transcript_id AT2G01750.1  protein_id AT2G01750.1p  transcript_id AT2G01750.1  
At2g01755	chr2:000332249	0.0	C/332249-332770	AT2G01755.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 91 Blast hits to 91 proteins in 40 species: Archae - 0; Bacteria - 64; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT2G01755.1p  transcript_id AT2G01755.1  protein_id AT2G01755.1p  transcript_id AT2G01755.1  
At2g01760	chr2:000333041	0.0	W/333041-333149,333234-333389,333468-333872,333956-334032,334113-334514	AT2G01760.1  CDS  gene_syn ARABIDOPSIS RESPONSE REGULATOR 14, ARR14, T8O11.7, T8O11_7  gene ARR14  function member of Response Regulator: B- Type  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_function two-component response regulator activity|GO:0000156|11574878|ISS  go_function two-component response regulator activity|GO:0000156|12068096|ISS  go_function two-component response regulator activity|GO:0000156||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14); transcription factor/ two-component response regulator  note ARABIDOPSIS RESPONSE REGULATOR 14 (ARR14); FUNCTIONS IN: transcription factor activity, two-component response regulator activity; INVOLVED IN: cytokinin mediated signaling; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Response regulator, plant B-type (InterPro:IPR017053), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), CheY-like (InterPro:IPR011006), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Signal transduction response regulator, receiver region (InterPro:IPR001789), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: ARR2 (ARABIDOPSIS RESPONSE REGULATOR 2); transcription factor/ two-component response regulator (TAIR:AT4G16110.1); Has 57011 Blast hits to 56511 proteins in 1721 species: Archae - 410; Bacteria - 48147; Metazoa - 20; Fungi - 241; Plants - 1376; Viruses - 3; Other Eukaryotes - 6814 (source: NCBI BLink).  protein_id AT2G01760.1p  transcript_id AT2G01760.1  protein_id AT2G01760.1p  transcript_id AT2G01760.1  
At2g01770	chr2:000336172	0.0	C/336172-336425,335654-335739,335448-335562,334775-335072	AT2G01770.1  CDS  gene_syn T8O11.6, T8O11_6, VIT1, vacuolar iron transporter 1  gene VIT1  function Encodes an iron transporter required for iron sequestration into vacuoles. Expressed in developing embryo and seed. Localized in the vacuolar membrane.  go_component vacuolar membrane|GO:0005774|17082420|IDA  go_process intracellular sequestering of iron ion|GO:0006880|17082420|IGI  go_process intracellular sequestering of iron ion|GO:0006880|17082420|IMP  go_function iron ion transmembrane transporter activity|GO:0005381|17082420|IGI  product VIT1 (vacuolar iron transporter 1); iron ion transmembrane transporter  note vacuolar iron transporter 1 (VIT1); FUNCTIONS IN: iron ion transmembrane transporter activity; INVOLVED IN: intracellular sequestering of iron ion; LOCATED IN: vacuolar membrane; EXPRESSED IN: flower, vascular system; EXPRESSED DURING: 4 anthesis, developing seed stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF125, transmembrane (InterPro:IPR008217); Has 1128 Blast hits to 1128 proteins in 383 species: Archae - 51; Bacteria - 614; Metazoa - 0; Fungi - 103; Plants - 90; Viruses - 0; Other Eukaryotes - 270 (source: NCBI BLink).  protein_id AT2G01770.1p  transcript_id AT2G01770.1  protein_id AT2G01770.1p  transcript_id AT2G01770.1  
At2g01780	chr2:000339719	0.0	C/339719-339871,339354-339635,338398-338512,338293-338364,338024-338229	AT2G01780.1  CDS  gene_syn T8O11.5, T8O11_5  go_process recognition of pollen|GO:0048544||IEA  go_function sugar binding|GO:0005529||IEA  go_component cellular_component|GO:0005575||ND  go_function sugar binding|GO:0005529||ISS  product S-locus glycoprotein, putative  note S-locus glycoprotein, putative; FUNCTIONS IN: sugar binding; INVOLVED IN: recognition of pollen; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: ARK3 (A. THALIANA RECEPTOR KINASE 3); kinase/ transmembrane receptor protein serine/threonine kinase (TAIR:AT4G21380.1); Has 1072 Blast hits to 1048 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1072; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G01780.1p  transcript_id AT2G01780.1  protein_id AT2G01780.1p  transcript_id AT2G01780.1  
At2g01790	chr2:000342374	0.0	C/342374-342480,342123-342289,341823-342037,341322-341642	AT2G01790.1  CDS  gene_syn T8O11.4, T8O11_4  go_component endomembrane system|GO:0012505||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT3G27040.1); Has 469 Blast hits to 441 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 190; Fungi - 6; Plants - 256; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT2G01790.1p  transcript_id AT2G01790.1  protein_id AT2G01790.1p  transcript_id AT2G01790.1  
At2g01800	chr2:000345152	0.0	C/345152-345254,344986-345053,344665-344896,344397-344576,343766-343932	AT2G01800.2  CDS  gene_syn T8O11.3, T8O11_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product COP1-interacting protein-related  note COP1-interacting protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT4G00580.1); Has 129 Blast hits to 127 proteins in 33 species: Archae - 0; Bacteria - 3; Metazoa - 64; Fungi - 8; Plants - 42; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT2G01800.2p  transcript_id AT2G01800.2  protein_id AT2G01800.2p  transcript_id AT2G01800.2  
At2g01800	chr2:000345152	0.0	C/345152-345254,344986-345053,344665-344896,344397-344576,344032-344127,343766-343932	AT2G01800.3  CDS  gene_syn T8O11.3, T8O11_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product COP1-interacting protein-related  note COP1-interacting protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT4G00580.1); Has 212 Blast hits to 207 proteins in 58 species: Archae - 0; Bacteria - 4; Metazoa - 102; Fungi - 22; Plants - 42; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT2G01800.3p  transcript_id AT2G01800.3  protein_id AT2G01800.3p  transcript_id AT2G01800.3  
At2g01800	chr2:000345152	0.0	C/345152-345254,344986-345053,344665-344896,344397-344576,344248-344316,344032-344127,343766-343932	AT2G01800.1  CDS  gene_syn T8O11.3, T8O11_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product COP1-interacting protein-related  note COP1-interacting protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT4G00580.1); Has 710 Blast hits to 625 proteins in 126 species: Archae - 2; Bacteria - 34; Metazoa - 246; Fungi - 74; Plants - 84; Viruses - 5; Other Eukaryotes - 265 (source: NCBI BLink).  protein_id AT2G01800.1p  transcript_id AT2G01800.1  protein_id AT2G01800.1p  transcript_id AT2G01800.1  
At2g01810	chr2:000347537	0.0	W/347537-347849,347936-348179,348416-349952	AT2G01810.1  CDS  gene_syn T8O11.2, T8O11_2  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product PHD finger family protein  note PHD finger family protein; FUNCTIONS IN: protein binding, DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: MMD1 (MALE MEIOCYTE DEATH 1); DNA binding / protein binding / zinc ion binding (TAIR:AT1G66170.1); Has 404 Blast hits to 394 proteins in 97 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 138; Plants - 119; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT2G01810.1p  transcript_id AT2G01810.1  protein_id AT2G01810.1p  transcript_id AT2G01810.1  
At2g01818	chr2:000355362	0.0	C/355362-355370,354648-354914,354355-354513,353552-353785	AT2G01818.1  CDS  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: zinc-binding protein, putative (TAIR:AT3G60670.1); Has 189 Blast hits to 189 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 189; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G01818.1p  transcript_id AT2G01818.1  protein_id AT2G01818.1p  transcript_id AT2G01818.1  
At2g01820	chr2:000358395	0.0	C/358395-360681,357664-358208	AT2G01820.1  CDS  gene_syn T23K3.1, T23K3_1  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process pollen development|GO:0009555|19237690|IMP  product leucine-rich repeat protein kinase, putative  note leucine-rich repeat protein kinase, putative; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: pollen development; LOCATED IN: plasma membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: TMK1 (TRANSMEMBRANE KINASE 1); transmembrane receptor protein serine/threonine kinase (TAIR:AT1G66150.1); Has 125468 Blast hits to 101823 proteins in 3539 species: Archae - 87; Bacteria - 10884; Metazoa - 49920; Fungi - 7788; Plants - 38228; Viruses - 404; Other Eukaryotes - 18157 (source: NCBI BLink).  protein_id AT2G01820.1p  transcript_id AT2G01820.1  protein_id AT2G01820.1p  transcript_id AT2G01820.1  
At2g01830	chr2:000366887	0.0	C/366887-367429,366470-366706,366207-366376,365813-366031,365493-365731,365170-365399,364993-365091,363705-364909,363332-363563	AT2G01830.1  CDS  gene_syn AHK4, ARABIDOPSIS HISTIDINE KINASE 4, CRE1, CYTOKININ RESPONSE 1, T23K3.2, T23K3_2, WOL, WOL1, WOODEN LEG, WOODEN LEG 1  gene WOL  function Histidine kinase: cytokinin-binding receptor that transduces cytokinin signals across the plasma membrane  go_component membrane|GO:0016020||IEA  go_process protein amino acid phosphorylation|GO:0006468|16753566|IGI  go_process response to water deprivation|GO:0009414|18077346|IEP  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_process regulation of seed germination|GO:0010029|16361392|IMP  go_process embryonic root morphogenesis|GO:0010086|11114883|IMP  go_process defense response to bacterium|GO:0042742|19129491|IDA  go_process defense response to bacterium|GO:0042742|19129491|IMP  go_process regulation of shoot development|GO:0048831|16361392|IMP  go_function protein histidine kinase activity|GO:0004673|16753566|IDA  go_function protein histidine kinase activity|GO:0004673||ISS  go_function phosphoprotein phosphatase activity|GO:0004721|16753566|IDA  go_function osmosensor activity|GO:0005034|18077346|IGI  go_function cytokinin receptor activity|GO:0009884|14503005|TAS  go_function cytokinin receptor activity|GO:0009884|16361392|TAS  product WOL (WOODEN LEG); cytokinin receptor/ osmosensor/ phosphoprotein phosphatase/ protein histidine kinase  note WOODEN LEG (WOL); FUNCTIONS IN: osmosensor activity, cytokinin receptor activity, phosphoprotein phosphatase activity, protein histidine kinase activity; INVOLVED IN: in 7 processes; LOCATED IN: membrane; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), CHASE (InterPro:IPR006189), Signal transduction histidine kinase, core (InterPro:IPR005467), ATP-binding region, ATPase-like (InterPro:IPR003594), CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver region (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region (InterPro:IPR003661), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: AHK2 (ARABIDOPSIS HISTIDINE KINASE 2); cytokinin receptor/ osmosensor/ protein histidine kinase (TAIR:AT5G35750.1); Has 80059 Blast hits to 64017 proteins in 1757 species: Archae - 476; Bacteria - 66995; Metazoa - 23; Fungi - 1602; Plants - 1623; Viruses - 27; Other Eukaryotes - 9313 (source: NCBI BLink).  protein_id AT2G01830.1p  transcript_id AT2G01830.1  protein_id AT2G01830.1p  transcript_id AT2G01830.1  
At2g01830	chr2:000366887	0.0	C/366887-367429,366470-366706,366207-366376,365813-366031,365493-365731,365170-365399,364993-365091,363705-364909,363332-363563	AT2G01830.3  CDS  gene_syn AHK4, ARABIDOPSIS HISTIDINE KINASE 4, CRE1, CYTOKININ RESPONSE 1, T23K3.2, T23K3_2, WOL, WOL1, WOODEN LEG, WOODEN LEG 1  gene WOL  function Histidine kinase: cytokinin-binding receptor that transduces cytokinin signals across the plasma membrane  go_component membrane|GO:0016020||IEA  go_process protein amino acid phosphorylation|GO:0006468|16753566|IGI  go_process response to water deprivation|GO:0009414|18077346|IEP  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_process regulation of seed germination|GO:0010029|16361392|IMP  go_process embryonic root morphogenesis|GO:0010086|11114883|IMP  go_process defense response to bacterium|GO:0042742|19129491|IDA  go_process defense response to bacterium|GO:0042742|19129491|IMP  go_process regulation of shoot development|GO:0048831|16361392|IMP  go_function protein histidine kinase activity|GO:0004673|16753566|IDA  go_function protein histidine kinase activity|GO:0004673||ISS  go_function phosphoprotein phosphatase activity|GO:0004721|16753566|IDA  go_function osmosensor activity|GO:0005034|18077346|IGI  go_function cytokinin receptor activity|GO:0009884|14503005|TAS  go_function cytokinin receptor activity|GO:0009884|16361392|TAS  product WOL (WOODEN LEG); cytokinin receptor/ osmosensor/ phosphoprotein phosphatase/ protein histidine kinase  note WOODEN LEG (WOL); FUNCTIONS IN: osmosensor activity, cytokinin receptor activity, phosphoprotein phosphatase activity, protein histidine kinase activity; INVOLVED IN: in 7 processes; LOCATED IN: membrane; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), CHASE (InterPro:IPR006189), Signal transduction histidine kinase, core (InterPro:IPR005467), ATP-binding region, ATPase-like (InterPro:IPR003594), CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver region (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region (InterPro:IPR003661), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: AHK2 (ARABIDOPSIS HISTIDINE KINASE 2); cytokinin receptor/ osmosensor/ protein histidine kinase (TAIR:AT5G35750.1); Has 80059 Blast hits to 64017 proteins in 1757 species: Archae - 476; Bacteria - 66995; Metazoa - 23; Fungi - 1602; Plants - 1623; Viruses - 27; Other Eukaryotes - 9313 (source: NCBI BLink).  protein_id AT2G01830.3p  transcript_id AT2G01830.3  protein_id AT2G01830.3p  transcript_id AT2G01830.3  
At2g01830	chr2:000367955	0.0	C/367955-368016,366887-367436,366470-366706,366207-366376,365813-366031,365493-365731,365170-365399,364993-365091,363705-364909,363332-363563	AT2G01830.2  CDS  gene_syn AHK4, ARABIDOPSIS HISTIDINE KINASE 4, CRE1, CYTOKININ RESPONSE 1, T23K3.2, T23K3_2, WOL, WOL1, WOODEN LEG, WOODEN LEG 1  gene WOL  function Histidine kinase: cytokinin-binding receptor that transduces cytokinin signals across the plasma membrane  go_component membrane|GO:0016020||IEA  go_process protein amino acid phosphorylation|GO:0006468|16753566|IGI  go_process response to water deprivation|GO:0009414|18077346|IEP  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_process regulation of seed germination|GO:0010029|16361392|IMP  go_process embryonic root morphogenesis|GO:0010086|11114883|IMP  go_process defense response to bacterium|GO:0042742|19129491|IDA  go_process defense response to bacterium|GO:0042742|19129491|IMP  go_process regulation of shoot development|GO:0048831|16361392|IMP  go_function protein histidine kinase activity|GO:0004673|16753566|IDA  go_function protein histidine kinase activity|GO:0004673||ISS  go_function phosphoprotein phosphatase activity|GO:0004721|16753566|IDA  go_function osmosensor activity|GO:0005034|18077346|IGI  go_function cytokinin receptor activity|GO:0009884|14503005|TAS  go_function cytokinin receptor activity|GO:0009884|16361392|TAS  product WOL (WOODEN LEG); cytokinin receptor/ osmosensor/ phosphoprotein phosphatase/ protein histidine kinase  note WOODEN LEG (WOL); FUNCTIONS IN: osmosensor activity, cytokinin receptor activity, phosphoprotein phosphatase activity, protein histidine kinase activity; INVOLVED IN: in 7 processes; LOCATED IN: membrane; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), CHASE (InterPro:IPR006189), Signal transduction histidine kinase, core (InterPro:IPR005467), ATP-binding region, ATPase-like (InterPro:IPR003594), CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver region (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region (InterPro:IPR003661), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: AHK2 (ARABIDOPSIS HISTIDINE KINASE 2); cytokinin receptor/ osmosensor/ protein histidine kinase (TAIR:AT5G35750.1); Has 80053 Blast hits to 64012 proteins in 1757 species: Archae - 476; Bacteria - 66990; Metazoa - 23; Fungi - 1602; Plants - 1623; Viruses - 27; Other Eukaryotes - 9312 (source: NCBI BLink).  protein_id AT2G01830.2p  transcript_id AT2G01830.2  protein_id AT2G01830.2p  transcript_id AT2G01830.2  
At2g01840	chr2:000373125	0.0	C/373125-378447	AT2G01840.1  mRNA_TE_gene  pseudo  gene_syn T23K3.3, T23K3_3  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 9.6e-34 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)  
At2g01850	chr2:000385374	0.0	W/385374-385557,385632-385732,385858-386066,386631-387138	AT2G01850.1  CDS  gene_syn ATXTH27, ENDO-XYLOGLUCAN TRANSFERASE A3, EXGT-A3, T23K3.4, T23K3_4, XTH27, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27  gene EXGT-A3  function EXGT-A3 has homology to xyloglucan endotransglucosylases/hydrolases (XTHs). Mutants in this gene show a lesion mimic phenotype associated with leaf maturation and a reduction in the number of tertiary veins. Individual tracheary elements in the mutants are shorter, but phloem transport activity is not severely affected. EXGT-A3 plays a role in xyloglucan degradation in the differentiating tracheary elements of rosette leaves.  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process phloem or xylem histogenesis|GO:0010087|15860011|IMP  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762|10406121|IDA  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762|15860011|ISS  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product EXGT-A3; hydrolase, acting on glycosyl bonds / xyloglucan:xyloglucosyl transferase  note EXGT-A3; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: phloem or xylem histogenesis; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: XTR2 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE RELATED 2); hydrolase, acting on glycosyl bonds / xyloglucan:xyloglucosyl transferase (TAIR:AT1G14720.1); Has 1344 Blast hits to 1338 proteins in 203 species: Archae - 0; Bacteria - 176; Metazoa - 0; Fungi - 302; Plants - 796; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT2G01850.1p  transcript_id AT2G01850.1  protein_id AT2G01850.1p  transcript_id AT2G01850.1  
At2g01860	chr2:000388283	0.0	W/388283-389743	AT2G01860.1  CDS  gene_syn EMB975, EMBRYO DEFECTIVE 975, T23K3.5, T23K3_5  gene EMB975  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product EMB975 (EMBRYO DEFECTIVE 975)  note EMBRYO DEFECTIVE 975 (EMB975); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G38420.1); Has 2464 Blast hits to 1412 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 2414; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT2G01860.1p  transcript_id AT2G01860.1  protein_id AT2G01860.1p  transcript_id AT2G01860.1  
At2g01870	chr2:000389846	0.0	C/389846-390319	AT2G01870.1  CDS  gene_syn T23K3.6, T23K3_6  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G01870.1p  transcript_id AT2G01870.1  protein_id AT2G01870.1p  transcript_id AT2G01870.1  
At2g01880	chr2:000393779	0.0	C/393779-393967,393023-393179,392514-392621,392297-392424,392076-392204,391884-391948,391563-391773	AT2G01880.1  CDS  gene_syn ATPAP7, PAP7, PURPLE ACID PHOSPHATASE 7, T23K3.7, T23K3_7  gene PAP7  go_component endomembrane system|GO:0012505||IEA  go_function acid phosphatase activity|GO:0003993|12021284|ISS  go_function acid phosphatase activity|GO:0003993|16244908|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PAP7 (PURPLE ACID PHOSPHATASE 7); acid phosphatase/ protein serine/threonine phosphatase  note PURPLE ACID PHOSPHATASE 7 (PAP7); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: PAP17; acid phosphatase/ phosphatase/ protein serine/threonine phosphatase (TAIR:AT3G17790.1); Has 806 Blast hits to 802 proteins in 206 species: Archae - 0; Bacteria - 163; Metazoa - 324; Fungi - 6; Plants - 100; Viruses - 0; Other Eukaryotes - 213 (source: NCBI BLink).  protein_id AT2G01880.1p  transcript_id AT2G01880.1  protein_id AT2G01880.1p  transcript_id AT2G01880.1  
At2g01890	chr2:000398968	0.0	C/398968-399168,398162-398318,397923-398030,397728-397855,397446-397574,397289-397356,396985-397201	AT2G01890.1  CDS  gene_syn ATPAP8, PAP8, PURPLE ACID PHOSPHATASE 8, T23K3.8, T23K3_8  gene PAP8  function Encodes a purple acid phosphatase (PAP) belonging to the low molecular weight plant PAP group.  go_component endomembrane system|GO:0012505||IEA  go_process dephosphorylation|GO:0016311|10854785|ISS  go_function acid phosphatase activity|GO:0003993|12021284|ISS  go_function acid phosphatase activity|GO:0003993|16244908|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PAP8 (PURPLE ACID PHOSPHATASE 8); acid phosphatase/ protein serine/threonine phosphatase  note PURPLE ACID PHOSPHATASE 8 (PAP8); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: dephosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: PAP3 (PURPLE ACID PHOSPHATASE 3); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT1G14700.1); Has 903 Blast hits to 899 proteins in 221 species: Archae - 0; Bacteria - 184; Metazoa - 333; Fungi - 4; Plants - 97; Viruses - 0; Other Eukaryotes - 285 (source: NCBI BLink).  protein_id AT2G01890.1p  transcript_id AT2G01890.1  protein_id AT2G01890.1p  transcript_id AT2G01890.1  
At2g01890	chr2:000398968	0.0	C/398968-399168,398162-398318,398007-398030,397728-397855,397446-397574,397289-397356,396985-397201	AT2G01890.2  CDS  gene_syn ATPAP8, PAP8, PURPLE ACID PHOSPHATASE 8, T23K3.8, T23K3_8  gene PAP8  function Encodes a purple acid phosphatase (PAP) belonging to the low molecular weight plant PAP group.  go_component endomembrane system|GO:0012505||IEA  go_process dephosphorylation|GO:0016311|10854785|ISS  go_function acid phosphatase activity|GO:0003993|12021284|ISS  go_function acid phosphatase activity|GO:0003993|16244908|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PAP8 (PURPLE ACID PHOSPHATASE 8); acid phosphatase/ protein serine/threonine phosphatase  note PURPLE ACID PHOSPHATASE 8 (PAP8); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: dephosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: PAP3 (PURPLE ACID PHOSPHATASE 3); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT1G14700.1); Has 884 Blast hits to 878 proteins in 214 species: Archae - 7; Bacteria - 174; Metazoa - 331; Fungi - 4; Plants - 100; Viruses - 0; Other Eukaryotes - 268 (source: NCBI BLink).  protein_id AT2G01890.2p  transcript_id AT2G01890.2  protein_id AT2G01890.2p  transcript_id AT2G01890.2  
At2g01900	chr2:000406136	0.0	W/406136-406311,406684-406791,406885-407188,407812-407996,408268-408376,408475-408626,408714-408933	AT2G01900.1  CDS  gene_syn T23K3.9, T23K3_9  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437||IEA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product endonuclease/exonuclease/phosphatase family protein  note endonuclease/exonuclease/phosphatase family protein; FUNCTIONS IN: hydrolase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: sepal, hypocotyl, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein (TAIR:AT2G37440.1); Has 1513 Blast hits to 1357 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 597; Fungi - 340; Plants - 368; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink).  protein_id AT2G01900.1p  transcript_id AT2G01900.1  protein_id AT2G01900.1p  transcript_id AT2G01900.1  
At2g01905	chr2:000410373	0.0	W/410373-410435,410545-410621,410933-411032,411121-411219,411300-411317,411417-411487,411598-411724,411843-411903,413389-413477	AT2G01905.1  CDS  gene_syn CYCJ18, CYCLIN J18  gene CYCJ18  function cyclin J18 (cycJ18)  go_process regulation of cell cycle|GO:0051726|11389963|TAS  product CYCJ18 (CYCLIN J18)  note CYCLIN J18 (CYCJ18); INVOLVED IN: regulation of cell cycle; CONTAINS InterPro DOMAIN/s: Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); Has 12 Blast hits to 12 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G01905.1p  transcript_id AT2G01905.1  protein_id AT2G01905.1p  transcript_id AT2G01905.1  
At2g01910	chr2:000417191	0.0	W/417191-417268,417653-417856,417957-418226,418299-418514,418621-418776,418861-419020,419114-419265,419336-419423,419515-419588,419671-419745,419829-420182	AT2G01910.1  CDS  gene_syn ATMAP65-6, MAP65-6, T23K3.10, T23K3_10  gene ATMAP65-6  function Binds microtubules. Induces a crisscross mesh of microtubules, not bundles. Not involved in microtubule polymerization nor nucleation. Localizes to mitochondria.  go_component mitochondrion|GO:0005739|15908607|IDA  go_component phragmoplast|GO:0009524|19060108|IDA  go_component plastid|GO:0009536|15469496|IDA  go_component preprophase band|GO:0009574|19060108|IDA  go_process microtubule nucleation|GO:0007020|15908607|IDA  go_process positive regulation of microtubule polymerization|GO:0031116|15908607|IDA  go_process anaphase|GO:0051322|19060108|IDA  go_function microtubule binding|GO:0008017|15908607|IDA  product ATMAP65-6; microtubule binding  note ATMAP65-6; FUNCTIONS IN: microtubule binding; INVOLVED IN: microtubule nucleation, anaphase, positive regulation of microtubule polymerization; LOCATED IN: mitochondrion, plastid, preprophase band, phragmoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MAP65/ASE1 (InterPro:IPR007145); BEST Arabidopsis thaliana protein match is: MAP65-7 (MICROTUBULE-ASSOCIATED PROTEIN 65-7) (TAIR:AT1G14690.2); Has 4611 Blast hits to 3736 proteins in 345 species: Archae - 70; Bacteria - 281; Metazoa - 2551; Fungi - 368; Plants - 252; Viruses - 11; Other Eukaryotes - 1078 (source: NCBI BLink).  protein_id AT2G01910.1p  transcript_id AT2G01910.1  protein_id AT2G01910.1p  transcript_id AT2G01910.1  
At2g01910	chr2:000417698	0.0	W/417698-417856,417957-418226,418299-418514,418621-418776,418861-419020,419114-419265,419336-419423,419515-419588,419671-419745,419829-420182	AT2G01910.2  CDS  gene_syn ATMAP65-6, MAP65-6, T23K3.10, T23K3_10  gene ATMAP65-6  function Binds microtubules. Induces a crisscross mesh of microtubules, not bundles. Not involved in microtubule polymerization nor nucleation. Localizes to mitochondria.  go_component mitochondrion|GO:0005739|15908607|IDA  go_component phragmoplast|GO:0009524|19060108|IDA  go_component plastid|GO:0009536|15469496|IDA  go_component preprophase band|GO:0009574|19060108|IDA  go_process microtubule nucleation|GO:0007020|15908607|IDA  go_process positive regulation of microtubule polymerization|GO:0031116|15908607|IDA  go_process anaphase|GO:0051322|19060108|IDA  go_function microtubule binding|GO:0008017|15908607|IDA  product ATMAP65-6; microtubule binding  note ATMAP65-6; FUNCTIONS IN: microtubule binding; INVOLVED IN: microtubule nucleation, anaphase, positive regulation of microtubule polymerization; LOCATED IN: mitochondrion, plastid, preprophase band, phragmoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MAP65/ASE1 (InterPro:IPR007145); BEST Arabidopsis thaliana protein match is: MAP65-7 (MICROTUBULE-ASSOCIATED PROTEIN 65-7) (TAIR:AT1G14690.2); Has 3178 Blast hits to 2644 proteins in 292 species: Archae - 51; Bacteria - 214; Metazoa - 1711; Fungi - 252; Plants - 204; Viruses - 8; Other Eukaryotes - 738 (source: NCBI BLink).  protein_id AT2G01910.2p  transcript_id AT2G01910.2  protein_id AT2G01910.2p  transcript_id AT2G01910.2  
At2g01913	chr2:000422552	0.0	C/422552-422569,422241-422399,421927-422166	AT2G01913.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 16 Blast hits to 16 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G01913.1p  transcript_id AT2G01913.1  protein_id AT2G01913.1p  transcript_id AT2G01913.1  
At2g01918	chr2:000425418	0.0	C/425418-425678,424428-424634,424254-424349	AT2G01918.1  CDS  go_component oxygen evolving complex|GO:0009654||IEA  go_component extrinsic to membrane|GO:0019898||IEA  go_process photosynthesis|GO:0015979||IEA  go_function calcium ion binding|GO:0005509||IEA  product calcium ion binding  note calcium ion binding; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: oxygen evolving complex, extrinsic to membrane; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbQ (InterPro:IPR008797); Has 73 Blast hits to 73 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G01918.1p  transcript_id AT2G01918.1  protein_id AT2G01918.1p  transcript_id AT2G01918.1  
At2g01920	chr2:000426052	0.0	W/426052-426990	AT2G01920.1  CDS  gene_syn F23I14.1, F23I14_1  go_function phospholipid binding|GO:0005543||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function binding|GO:0005488||ISS  product epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related  note epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related; FUNCTIONS IN: phospholipid binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (TAIR:AT1G14686.1); Has 163 Blast hits to 163 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 163; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G01920.1p  transcript_id AT2G01920.1  protein_id AT2G01920.1p  transcript_id AT2G01920.1  
At2g01930	chr2:000427358	0.0	C/427358-428209	AT2G01930.1  CDS  gene_syn ATBPC1, BASIC PENTACYSTEINE1, BBR, BPC1, F23I14.2, F23I14_2  gene BPC1  function BASIC PENTACYSTEINE1 (BPC1) is a regulator of the homeotic Arabidopsis thaliana gene SEEDSTICK (STK), which controls ovule identity. BPC1 induces conformational changes by cooperative binding to purine-rich elements present in the STK regulatory sequence. STK is upregulated in bpc1 mutant.  go_component nucleus|GO:0005634|14731261|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|14731261|IPI  go_function DNA binding|GO:0003677|14731261|IPI  go_function DNA binding|GO:0003677|15722463|IDA  go_function transcription factor activity|GO:0003700|14731261|IPI  go_function specific transcriptional repressor activity|GO:0016566|15722463|IMP  product BPC1 (BASIC PENTACYSTEINE1); DNA binding / specific transcriptional repressor/ transcription factor  note BASIC PENTACYSTEINE1 (BPC1); FUNCTIONS IN: transcription factor activity, DNA binding, specific transcriptional repressor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: BPC2 (BASIC PENTACYSTEINE 2); DNA binding / transcription factor (TAIR:AT1G14685.3); Has 123 Blast hits to 123 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 123; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G01930.1p  transcript_id AT2G01930.1  protein_id AT2G01930.1p  transcript_id AT2G01930.1  
At2g01930	chr2:000427358	0.0	C/427358-428209	AT2G01930.2  CDS  gene_syn ATBPC1, BASIC PENTACYSTEINE1, BBR, BPC1, F23I14.2, F23I14_2  gene BPC1  function BASIC PENTACYSTEINE1 (BPC1) is a regulator of the homeotic Arabidopsis thaliana gene SEEDSTICK (STK), which controls ovule identity. BPC1 induces conformational changes by cooperative binding to purine-rich elements present in the STK regulatory sequence. STK is upregulated in bpc1 mutant.  go_component nucleus|GO:0005634|14731261|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|14731261|IPI  go_function DNA binding|GO:0003677|14731261|IPI  go_function DNA binding|GO:0003677|15722463|IDA  go_function transcription factor activity|GO:0003700|14731261|IPI  go_function specific transcriptional repressor activity|GO:0016566|15722463|IMP  product BPC1 (BASIC PENTACYSTEINE1); DNA binding / specific transcriptional repressor/ transcription factor  note BASIC PENTACYSTEINE1 (BPC1); FUNCTIONS IN: transcription factor activity, DNA binding, specific transcriptional repressor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: BPC2 (BASIC PENTACYSTEINE 2); DNA binding / transcription factor (TAIR:AT1G14685.3); Has 123 Blast hits to 123 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 123; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G01930.2p  transcript_id AT2G01930.2  protein_id AT2G01930.2p  transcript_id AT2G01930.2  
At2g01940	chr2:000432652	0.0	W/432652-432811,433125-433511,434124-434917	AT2G01940.3  CDS  gene_syn ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 15, ATIDD15, F14H20.1, F14H20_1, SGR5, SHOOT GRAVITROPISM 5  gene SGR5  function May be involved in an early event in shoot gravitropism such as gravity perception and/or a signaling process subsequent to amyloplast sedimentation as a putative transcription factor in gravity-perceptive cells.  go_component nucleus|GO:0005634|16813575|IDA  go_process positive gravitropism|GO:0009958|9210330|IMP  go_process negative gravitropism|GO:0009959|9210330|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product nucleic acid binding / transcription factor/ zinc ion binding  note SHOOT GRAVITROPISM 5 (SGR5); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: negative gravitropism, positive gravitropism, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: AtIDD14 (Arabidopsis thaliana Indeterminate(ID)-Domain 14); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT1G68130.1); Has 11549 Blast hits to 7491 proteins in 209 species: Archae - 0; Bacteria - 0; Metazoa - 10834; Fungi - 41; Plants - 391; Viruses - 0; Other Eukaryotes - 283 (source: NCBI BLink).  protein_id AT2G01940.3p  transcript_id AT2G01940.3  protein_id AT2G01940.3p  transcript_id AT2G01940.3  
At2g01940	chr2:000432652	0.0	W/432652-432811,433125-433527,434143-434917	AT2G01940.1  CDS  gene_syn ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 15, ATIDD15, F14H20.1, F14H20_1, SGR5, SHOOT GRAVITROPISM 5  gene SGR5  function May be involved in an early event in shoot gravitropism such as gravity perception and/or a signaling process subsequent to amyloplast sedimentation as a putative transcription factor in gravity-perceptive cells.  go_component nucleus|GO:0005634|16813575|IDA  go_process positive gravitropism|GO:0009958|9210330|IMP  go_process negative gravitropism|GO:0009959|9210330|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product nucleic acid binding / transcription factor/ zinc ion binding  note SHOOT GRAVITROPISM 5 (SGR5); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: negative gravitropism, positive gravitropism, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: AtIDD14 (Arabidopsis thaliana Indeterminate(ID)-Domain 14); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT1G68130.1); Has 29455 Blast hits to 14536 proteins in 254 species: Archae - 1; Bacteria - 0; Metazoa - 28069; Fungi - 151; Plants - 392; Viruses - 0; Other Eukaryotes - 842 (source: NCBI BLink).  protein_id AT2G01940.1p  transcript_id AT2G01940.1  protein_id AT2G01940.1p  transcript_id AT2G01940.1  
At2g01940	chr2:000433232	0.0	W/433232-433527,434143-434917	AT2G01940.2  CDS  gene_syn ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 15, ATIDD15, F14H20.1, F14H20_1, SGR5, SHOOT GRAVITROPISM 5  gene SGR5  function May be involved in an early event in shoot gravitropism such as gravity perception and/or a signaling process subsequent to amyloplast sedimentation as a putative transcription factor in gravity-perceptive cells.  go_component nucleus|GO:0005634|16813575|IDA  go_process positive gravitropism|GO:0009958|9210330|IMP  go_process negative gravitropism|GO:0009959|9210330|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product nucleic acid binding / transcription factor/ zinc ion binding  note SHOOT GRAVITROPISM 5 (SGR5); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: negative gravitropism, positive gravitropism, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: AtIDD14 (Arabidopsis thaliana Indeterminate(ID)-Domain 14); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT1G68130.2); Has 4204 Blast hits to 3517 proteins in 149 species: Archae - 1; Bacteria - 0; Metazoa - 3541; Fungi - 105; Plants - 385; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink).  protein_id AT2G01940.2p  transcript_id AT2G01940.2  protein_id AT2G01940.2p  transcript_id AT2G01940.2  
At2g01950	chr2:000440805	0.0	C/440805-444236	AT2G01950.1  CDS  gene_syn BRI1-LIKE 2, BRL2, F14H20.2, F14H20_2, VASCULAR HIGHWAY 1, VH1  gene BRL2  function Encodes a leucine rich repeat receptor kinase and associated with provascular/procambial cells. Similar to BRI, brassinosteroid receptor protein.  go_component cellular_component|GO:0005575||ND  go_process xylem and phloem pattern formation|GO:0010051|12417696|IMP  go_process phloem transport|GO:0010233|12417696|IDA  go_function transmembrane receptor protein serine/threonine kinase activity|GO:0004675|12417696|ISS  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_process auxin mediated signaling pathway|GO:0009734|19000166|IMP  go_process brassinosteroid mediated signaling|GO:0009742|19000166|IMP  go_process leaf vascular tissue pattern formation|GO:0010305|19000166|IMP  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product BRL2 (BRI1-LIKE 2); ATP binding / protein serine/threonine kinase/ transmembrane receptor protein serine/threonine kinase  note BRI1-LIKE 2 (BRL2); FUNCTIONS IN: protein serine/threonine kinase activity, transmembrane receptor protein serine/threonine kinase activity, ATP binding; INVOLVED IN: in 7 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: BRL3 (BRI1-LIKE 3); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase (TAIR:AT3G13380.1); Has 149995 Blast hits to 99598 proteins in 3346 species: Archae - 93; Bacteria - 11718; Metazoa - 62281; Fungi - 7162; Plants - 48279; Viruses - 353; Other Eukaryotes - 20109 (source: NCBI BLink).  protein_id AT2G01950.1p  transcript_id AT2G01950.1  protein_id AT2G01950.1p  transcript_id AT2G01950.1  
At2g01960	chr2:000450393	0.0	W/450393-450890,451518-451802	AT2G01960.1  CDS  gene_syn F14H20.3, F14H20_3, TET14, TETRASPANIN14  gene TET14  function Member of TETRASPANIN family  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product TET14 (TETRASPANIN14)  note TETRASPANIN14 (TET14); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower, carpel; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: TET15 (TETRASPANIN15) (TAIR:AT5G57810.1); Has 24 Blast hits to 24 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G01960.1p  transcript_id AT2G01960.1  protein_id AT2G01960.1p  transcript_id AT2G01960.1  
At2g01970	chr2:000454668	0.0	C/454668-454819,454402-454442,453716-454301,453491-453628,453252-453408,452690-453174,452197-452416	AT2G01970.1  CDS  gene_syn F14H20.4, F14H20_4  go_component plasma membrane|GO:0005886|17151019|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_component integral to membrane|GO:0016021||ISS  go_process transport|GO:0006810||ISS  product endomembrane protein 70, putative  note endomembrane protein 70, putative; INVOLVED IN: transport; LOCATED IN: integral to membrane, Golgi apparatus, plasma membrane, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: endomembrane protein 70, putative (TAIR:AT1G14670.1); Has 1023 Blast hits to 989 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 444; Fungi - 148; Plants - 242; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).  protein_id AT2G01970.1p  transcript_id AT2G01970.1  protein_id AT2G01970.1p  transcript_id AT2G01970.1  
At2g01973	chr2:000455659	0.0	C/455659-456088	AT2G01973.1  pseudogenic_transcript  pseudo  function pseudogene of OTU-like cysteine protease family protein  
At2g01980	chr2:000457070	0.0	W/457070-457295,457399-457449,457528-457619,457700-457777,457873-458030,458113-458214,458304-458421,458501-458553,458640-458705,458807-458851,459002-459054,459539-459723,459836-459880,459968-460075,460291-460522,460600-460899,461081-461178,461262-461393,461476-461694,461781-461984,462072-462342,462444-462742,462840-463145	AT2G01980.1  CDS  gene_syn ATSOS1, F14H20.5, F14H20_5, SALT OVERLY SENSITIVE 1, SOS1  gene SOS1  function Encodes a plasma membrane-localized Na+/H+ antiporter SOS1. Functions in the extrusion of toxic Na+ from cells and is essential for plant salt tolerance. Has 12 predicted transmembrane domains in the N-terminal region and a long cytoplasmic tail of approx. 700 aa at the C-terminal side. SOS1 interacts through its predicted cytoplasmic tail with RCD1, a regulator of oxidative-stress responses, suggesting that SOS1 might function in oxidative-stress tolerance.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component plasma membrane|GO:0005886|10823923|IDA  go_component plasma membrane|GO:0005886|11884687|IDA  go_process response to reactive oxygen species|GO:0000302|17996020|IEP  go_process oxygen and reactive oxygen species metabolic process|GO:0006800|17023541|IMP  go_process sodium ion transport|GO:0006814|11874577|IMP  go_process sodium ion transport|GO:0006814||ISS  go_process response to oxidative stress|GO:0006979|17996020|IMP  go_process response to salt stress|GO:0009651|10823923|IMP  go_process response to salt stress|GO:0009651|17996020|IEP  go_process response to salt stress|GO:0009651||IMP  go_process high-affinity potassium ion import|GO:0010163||IMP  go_process response to hydrogen peroxide|GO:0042542|17023541|IMP  go_process response to hydrogen peroxide|GO:0042542|17996020|IEP  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product SOS1 (SALT OVERLY SENSITIVE 1); sodium:hydrogen antiporter  note SALT OVERLY SENSITIVE 1 (SOS1); FUNCTIONS IN: sodium:hydrogen antiporter activity; INVOLVED IN: in 7 processes; LOCATED IN: plasma membrane, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cation/H+ exchanger, conserved region (InterPro:IPR018422), Cation/H+ exchanger (InterPro:IPR006153), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), Na+/H+ exchanger, isoforms 7/8, conserved region (InterPro:IPR018418); BEST Arabidopsis thaliana protein match is: ATNHX8; lithium:hydrogen antiporter/ sodium ion transmembrane transporter/ sodium:hydrogen antiporter (TAIR:AT1G14660.1); Has 5168 Blast hits to 5143 proteins in 1159 species: Archae - 83; Bacteria - 3268; Metazoa - 827; Fungi - 110; Plants - 267; Viruses - 0; Other Eukaryotes - 613 (source: NCBI BLink).  protein_id AT2G01980.1p  transcript_id AT2G01980.1  protein_id AT2G01980.1p  transcript_id AT2G01980.1  
At2g01990	chr2:000466333	0.0	C/466333-466497,466151-466220,465197-465603	AT2G01990.1  CDS  gene_syn F14H20.6, F14H20_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14630.1); Has 60 Blast hits to 60 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G01990.1p  transcript_id AT2G01990.1  protein_id AT2G01990.1p  transcript_id AT2G01990.1  
At2g02000	chr2:000471912	0.0	C/471912-471997,471207-471612,470911-471125,470327-470580,470199-470251,469505-469993	AT2G02000.1  CDS  gene_syn F14H20.7, F14H20_7, GAD3, glutamate decarboxylase 3  gene GAD3  go_process glutamate metabolic process|GO:0006536||IEA  go_process glutamate decarboxylation to succinate|GO:0006540||IEA  go_process carboxylic acid metabolic process|GO:0019752||IEA  go_component cellular_component|GO:0005575||ND  go_function calmodulin binding|GO:0005516|11782485|ISS  product GAD3 (glutamate decarboxylase 3); calmodulin binding  note glutamate decarboxylase 3 (GAD3); FUNCTIONS IN: calmodulin binding; INVOLVED IN: carboxylic acid metabolic process, glutamate metabolic process, glutamate decarboxylation to succinate; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Glutamate decarboxylase (InterPro:IPR010107), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: GAD4 (glutamate decarboxylase 4); calmodulin binding (TAIR:AT2G02010.1); Has 1647 Blast hits to 1645 proteins in 499 species: Archae - 126; Bacteria - 839; Metazoa - 130; Fungi - 220; Plants - 174; Viruses - 7; Other Eukaryotes - 151 (source: NCBI BLink).  protein_id AT2G02000.1p  transcript_id AT2G02000.1  protein_id AT2G02000.1p  transcript_id AT2G02000.1  
At2g02010	chr2:000476410	0.0	C/476410-476495,475818-476223,475503-475717,475163-475416,475008-475060,474375-474842	AT2G02010.1  CDS  gene_syn F14H20.8, F14H20_8, GAD4, glutamate decarboxylase 4  gene GAD4  go_process glutamate metabolic process|GO:0006536||IEA  go_process glutamate decarboxylation to succinate|GO:0006540||IEA  go_process carboxylic acid metabolic process|GO:0019752||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_function calmodulin binding|GO:0005516|11782485|ISS  product GAD4 (glutamate decarboxylase 4); calmodulin binding  note glutamate decarboxylase 4 (GAD4); FUNCTIONS IN: calmodulin binding; INVOLVED IN: carboxylic acid metabolic process, glutamate metabolic process, glutamate decarboxylation to succinate; LOCATED IN: cytosol, nucleus; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Glutamate decarboxylase (InterPro:IPR010107), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: GAD3 (glutamate decarboxylase 3); calmodulin binding (TAIR:AT2G02000.1); Has 1653 Blast hits to 1650 proteins in 504 species: Archae - 122; Bacteria - 850; Metazoa - 133; Fungi - 220; Plants - 176; Viruses - 3; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT2G02010.1p  transcript_id AT2G02010.1  protein_id AT2G02010.1p  transcript_id AT2G02010.1  
At2g02020	chr2:000479117	0.0	W/479117-479173,479248-479350,479452-479669,479749-480235,480359-481131	AT2G02020.1  CDS  gene_syn F14H20.9, F14H20_9  go_component membrane|GO:0016020||IEA  go_process oligopeptide transport|GO:0006857||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.06 six leaves visible; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region, conserved site (InterPro:IPR018456), TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT1G62200.1); Has 4789 Blast hits to 4500 proteins in 802 species: Archae - 0; Bacteria - 2123; Metazoa - 700; Fungi - 302; Plants - 1116; Viruses - 0; Other Eukaryotes - 548 (source: NCBI BLink).  protein_id AT2G02020.1p  transcript_id AT2G02020.1  protein_id AT2G02020.1p  transcript_id AT2G02020.1  
At2g02023	chr2:000481467	0.0	C/481467-481778	AT2G02023.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT2G02023.1p  transcript_id AT2G02023.1  protein_id AT2G02023.1p  transcript_id AT2G02023.1  
At2g02026	chr2:000481907	0.0	W/481907-482086	AT2G02026.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G02026.1p  transcript_id AT2G02026.1  protein_id AT2G02026.1p  transcript_id AT2G02026.1  
At2g02030	chr2:000482335	0.0	W/482335-482405,482896-483829	AT2G02030.1  CDS  gene_syn F14H20.10, F14H20_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G09650.1); Has 876 Blast hits to 869 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 874; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G02030.1p  transcript_id AT2G02030.1  protein_id AT2G02030.1p  transcript_id AT2G02030.1  
At2g02040	chr2:000487542	0.0	W/487542-487598,487854-488171,488250-488806,488882-489707	AT2G02040.1  CDS  gene_syn ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, ATPTR2, ATPTR2-B, F14H20.11, F14H20_11, HISTIDINE TRANSPORT PROTEIN, NITRATE TRANSPORTER 1, NTR1, PEPTIDE TRANSPORTER 2, PTR2, PTR2-B  gene PTR2  function Encodes a di- and tri-peptide transporter that recognizes a variety of different amino acid combinations. Expression of the transcripts for this gene can be detected in the embryo through in situ hybridization. This protein does not have nitrate transporter activity based on oocyte transport assays.  go_component plant-type vacuole|GO:0000325|16618929|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component vacuolar membrane|GO:0005774|16618929|IDA  go_process peptide transport|GO:0015833|9232875|TAS  go_process dipeptide transport|GO:0042938|7656990|IDA  go_process tripeptide transport|GO:0042939|7656990|IDA  go_function transporter activity|GO:0005215||ISS  go_function nitrate transmembrane transporter activity|GO:0015112|15138259|IDA  go_function peptide transporter activity|GO:0015197|8587981|ISS  go_function high affinity oligopeptide transporter activity|GO:0015334|7656990|IDA  go_function dipeptide transporter activity|GO:0042936|7656990|IDA  go_function dipeptide transporter activity|GO:0042936|7656990|IGI  go_function tripeptide transporter activity|GO:0042937|7656990|IDA  product PTR2 (PEPTIDE TRANSPORTER 2); dipeptide transporter/ high affinity oligopeptide transporter/ nitrate transmembrane transporter/ peptide transporter/ transporter/ tripeptide transporter  note PEPTIDE TRANSPORTER 2 (PTR2); FUNCTIONS IN: in 6 functions; INVOLVED IN: dipeptide transport, tripeptide transport, peptide transport; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region, conserved site (InterPro:IPR018456), TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT1G62200.1); Has 4780 Blast hits to 4461 proteins in 807 species: Archae - 0; Bacteria - 2047; Metazoa - 706; Fungi - 312; Plants - 1140; Viruses - 0; Other Eukaryotes - 575 (source: NCBI BLink).  protein_id AT2G02040.1p  transcript_id AT2G02040.1  protein_id AT2G02040.1p  transcript_id AT2G02040.1  
At2g02050	chr2:000490024	0.0	W/490024-490335	AT2G02050.1  CDS  go_component mitochondrion|GO:0005739|15276431|IDA  go_function NADH dehydrogenase activity|GO:0003954||IEA  go_function NADH dehydrogenase (ubiquinone) activity|GO:0008137||IEA  go_component mitochondrion|GO:0005739|12837548|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial membrane|GO:0031966|16407270|IDA  go_component respiratory chain complex I|GO:0045271|16407270|IDA  go_process mitochondrial electron transport, NADH to ubiquinone|GO:0006120||ISS  go_process photorespiration|GO:0009853|16407270|TAS  go_function NADH dehydrogenase (ubiquinone) activity|GO:0008137||ISS  product NADH-ubiquinone oxidoreductase B18 subunit, putative  note NADH-ubiquinone oxidoreductase B18 subunit, putative; FUNCTIONS IN: NADH dehydrogenase activity, NADH dehydrogenase (ubiquinone) activity; INVOLVED IN: mitochondrial electron transport, NADH to ubiquinone, photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NADH-ubiquinone oxidoreductase B18 subunit (InterPro:IPR008698); Has 184 Blast hits to 184 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 97; Fungi - 49; Plants - 29; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G02050.1p  transcript_id AT2G02050.1  protein_id AT2G02050.1p  transcript_id AT2G02050.1  
At2g02060	chr2:000495691	0.0	W/495691-495850,496269-496345,496452-496491,496765-496906,497032-497161,497388-497609	AT2G02060.1  CDS  gene_syn F14H20.13  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT1G14600.1); Has 873 Blast hits to 869 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 868; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT2G02060.1p  transcript_id AT2G02060.1  protein_id AT2G02060.1p  transcript_id AT2G02060.1  
At2g02061	chr2:000498025	0.0	W/498025-498324,498483-498854,498935-499416,499487-499559	AT2G02061.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, stem, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14590.1); Has 197 Blast hits to 193 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 188; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G02061.1p  transcript_id AT2G02061.1  protein_id AT2G02061.1p  transcript_id AT2G02061.1  
At2g02070	chr2:000505523	0.0	W/505523-505706,505968-506364,507927-509154	AT2G02070.1  CDS  gene_syn Arabidopsis thaliana Indeterminate(ID)-Domain 5, AtIDD5, F5O4.16, F5O4_16  gene AtIDD5  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product AtIDD5 (Arabidopsis thaliana Indeterminate(ID)-Domain 5); nucleic acid binding / transcription factor/ zinc ion binding  note Arabidopsis thaliana Indeterminate(ID)-Domain 5 (AtIDD5); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: AtIDD4 (Arabidopsis thaliana Indeterminate(ID)-Domain 4); transcription factor (TAIR:AT2G02080.1); Has 53167 Blast hits to 22405 proteins in 446 species: Archae - 6; Bacteria - 320; Metazoa - 45323; Fungi - 921; Plants - 495; Viruses - 6; Other Eukaryotes - 6096 (source: NCBI BLink).  protein_id AT2G02070.1p  transcript_id AT2G02070.1  protein_id AT2G02070.1p  transcript_id AT2G02070.1  
At2g02080	chr2:000520264	0.0	C/520264-520619,518328-519291	AT2G02080.2  CDS  gene_syn Arabidopsis thaliana Indeterminate(ID)-Domain 4, AtIDD4, F5O4.15, F5O4_15  gene AtIDD4  go_component intracellular|GO:0005622||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product AtIDD4 (Arabidopsis thaliana Indeterminate(ID)-Domain 4); transcription factor  note Arabidopsis thaliana Indeterminate(ID)-Domain 4 (AtIDD4); FUNCTIONS IN: transcription factor activity; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT1G14580.1); Has 42349 Blast hits to 16514 proteins in 244 species: Archae - 2; Bacteria - 145; Metazoa - 40137; Fungi - 204; Plants - 404; Viruses - 5; Other Eukaryotes - 1452 (source: NCBI BLink).  protein_id AT2G02080.2p  transcript_id AT2G02080.2  protein_id AT2G02080.2p  transcript_id AT2G02080.2  
At2g02080	chr2:000520981	0.0	C/520981-521170,520264-520660,518328-519291	AT2G02080.1  CDS  gene_syn Arabidopsis thaliana Indeterminate(ID)-Domain 4, AtIDD4, F5O4.15, F5O4_15  gene AtIDD4  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product AtIDD4 (Arabidopsis thaliana Indeterminate(ID)-Domain 4); transcription factor  note Arabidopsis thaliana Indeterminate(ID)-Domain 4 (AtIDD4); FUNCTIONS IN: transcription factor activity; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT1G14580.1); Has 43707 Blast hits to 17172 proteins in 249 species: Archae - 2; Bacteria - 145; Metazoa - 41423; Fungi - 218; Plants - 408; Viruses - 5; Other Eukaryotes - 1506 (source: NCBI BLink).  protein_id AT2G02080.1p  transcript_id AT2G02080.1  protein_id AT2G02080.1p  transcript_id AT2G02080.1  
At2g02090	chr2:000523481	0.0	W/523481-524065,524262-524379,524460-524500,524585-524835,524905-525085,525195-525380,525466-525639,525722-525880,525972-526049,526147-526283,526374-526592,526722-526884	AT2G02090.1  CDS  gene_syn CHA19, CHR19, CHROMATIN REMODELING 19, ETL1, F5O4.14, F5O4_14  gene ETL1  go_component chloroplast|GO:0009507||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function DNA binding|GO:0003677||ISS  go_function helicase activity|GO:0004386||ISS  go_function ATP binding|GO:0005524||ISS  product ETL1; ATP binding / DNA binding / helicase/ nucleic acid binding  note ETL1; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: CHR11 (CHROMATIN-REMODELING PROTEIN 11); ATP binding / DNA binding / DNA-dependent ATPase/ helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding / nucleosome binding (TAIR:AT3G06400.1); Has 13578 Blast hits to 11155 proteins in 1163 species: Archae - 82; Bacteria - 3430; Metazoa - 3239; Fungi - 2640; Plants - 921; Viruses - 195; Other Eukaryotes - 3071 (source: NCBI BLink).  protein_id AT2G02090.1p  transcript_id AT2G02090.1  protein_id AT2G02090.1p  transcript_id AT2G02090.1  
At2g02100	chr2:000528397	0.0	W/528397-528460,528716-528885	AT2G02100.1  CDS  gene_syn F5O4.13, F5O4_13, LCR69, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 69, PDF2.2  gene LCR69  function Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process defense response|GO:0006952|18674922|ISS  go_process defense response|GO:0006952||ISS  go_function peptidase inhibitor activity|GO:0030414||ISS  product LCR69 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 69); peptidase inhibitor  note LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 69 (LCR69); FUNCTIONS IN: peptidase inhibitor activity; INVOLVED IN: defense response; LOCATED IN: plasma membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Knottin (InterPro:IPR003614), Gamma Purothionin (InterPro:IPR008177); BEST Arabidopsis thaliana protein match is: LCR68 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 68); peptidase inhibitor (TAIR:AT2G02130.1); Has 277 Blast hits to 277 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 277; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G02100.1p  transcript_id AT2G02100.1  protein_id AT2G02100.1p  transcript_id AT2G02100.1  
At2g02103	chr2:000530425	0.0	C/530425-531636	AT2G02103.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25200.1); Has 142 Blast hits to 142 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 142; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G02103.1p  transcript_id AT2G02103.1  protein_id AT2G02103.1p  transcript_id AT2G02103.1  
At2g02110	chr2:000532320	0.0	C/532320-536341	AT2G02110.1  mRNA_TE_gene  pseudo  gene_syn F5O4.12  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.7e-36 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)  
At2g02120	chr2:000538319	0.0	W/538319-538382,538673-538842	AT2G02120.1  CDS  gene_syn F5O4.11, F5O4_11, LCR70, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 70, PDF2.1  gene PDF2.1  function Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952|18674922|ISS  go_process defense response|GO:0006952||ISS  go_function peptidase inhibitor activity|GO:0030414||ISS  product PDF2.1; peptidase inhibitor  note PDF2.1; FUNCTIONS IN: peptidase inhibitor activity; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Knottin (InterPro:IPR003614), Gamma Purothionin (InterPro:IPR008177); BEST Arabidopsis thaliana protein match is: LCR69 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 69); peptidase inhibitor (TAIR:AT2G02100.1); Has 273 Blast hits to 273 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 273; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G02120.1p  transcript_id AT2G02120.1  protein_id AT2G02120.1p  transcript_id AT2G02120.1  
At2g02130	chr2:000540071	0.0	W/540071-540134,540238-540407	AT2G02130.1  CDS  gene_syn F5O4.10, F5O4_10, LCR68, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 68, PDF2.3  gene LCR68  function Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952|18674922|ISS  go_process defense response|GO:0006952||ISS  go_function peptidase inhibitor activity|GO:0030414||ISS  product LCR68 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 68); peptidase inhibitor  note LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 68 (LCR68); FUNCTIONS IN: peptidase inhibitor activity; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Knottin (InterPro:IPR003614), Gamma Purothionin (InterPro:IPR008177); BEST Arabidopsis thaliana protein match is: LCR69 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 69); peptidase inhibitor (TAIR:AT2G02100.1); Has 281 Blast hits to 281 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G02130.1p  transcript_id AT2G02130.1  protein_id AT2G02130.1p  transcript_id AT2G02130.1  
At2g02135	chr2:000541897	0.0	W/541897-542173	AT2G02135.1  pseudogenic_transcript  pseudo  gene_syn LCR71, Low-molecular-weight cysteine-rich 71  gene LCR71  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  
At2g02140	chr2:000544755	0.0	W/544755-544818,545012-545169	AT2G02140.1  CDS  gene_syn F5O4.9, F5O4_9, LCR72, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 72, PDF2.6  gene LCR72  function Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952|18674922|ISS  go_process defense response|GO:0006952||ISS  go_function peptidase inhibitor activity|GO:0030414||ISS  product LCR72 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 72); peptidase inhibitor  note LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 72 (LCR72); FUNCTIONS IN: peptidase inhibitor activity; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Gamma Purothionin (InterPro:IPR008177), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: LCR69 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 69); peptidase inhibitor (TAIR:AT2G02100.1); Has 269 Blast hits to 269 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 269; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G02140.1p  transcript_id AT2G02140.1  protein_id AT2G02140.1p  transcript_id AT2G02140.1  
At2g02147	chr2:000546664	0.0	W/546664-546733,546854-547026	AT2G02147.1  CDS  gene_syn LCR73, Low-molecular-weight cysteine-rich 73  gene LCR73  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||IEA  product LCR73 (Low-molecular-weight cysteine-rich 73)  note Low-molecular-weight cysteine-rich 73 (LCR73); INVOLVED IN: defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: LCR66 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 66) (TAIR:AT1G61070.1); Has 243 Blast hits to 243 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 243; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G02147.1p  transcript_id AT2G02147.1  protein_id AT2G02147.1p  transcript_id AT2G02147.1  
At2g02150	chr2:000550344	0.0	C/550344-552229,550192-550301,550093-550150,549520-549586,549140-549322,548918-549023,548480-548830,548242-548404,548036-548156,547902-547955,547577-547801,547389-547490	AT2G02150.1  CDS  gene_syn F5O4.8, F5O4_8  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G01740.1); Has 27625 Blast hits to 6271 proteins in 191 species: Archae - 5; Bacteria - 28; Metazoa - 844; Fungi - 675; Plants - 24576; Viruses - 0; Other Eukaryotes - 1497 (source: NCBI BLink).  protein_id AT2G02150.1p  transcript_id AT2G02150.1  protein_id AT2G02150.1p  transcript_id AT2G02150.1  
At2g02160	chr2:000555759	0.0	C/555759-555899,555262-555372,553407-555164	AT2G02160.1  CDS  gene_syn F5O4.7, F5O4_7  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc finger (CCCH-type) family protein  note zinc finger (CCCH-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); Has 10894 Blast hits to 6834 proteins in 394 species: Archae - 15; Bacteria - 298; Metazoa - 5860; Fungi - 845; Plants - 435; Viruses - 183; Other Eukaryotes - 3258 (source: NCBI BLink).  protein_id AT2G02160.1p  transcript_id AT2G02160.1  protein_id AT2G02160.1p  transcript_id AT2G02160.1  
At2g02170	chr2:000558581	0.0	C/558581-558610,558254-558398,557598-558140,557062-557515,556898-556979,556595-556801	AT2G02170.1  CDS  gene_syn F5O4.6, F5O4_6  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product remorin family protein  note remorin family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal region (InterPro:IPR005516); BEST Arabidopsis thaliana protein match is: remorin family protein (TAIR:AT1G30320.1); Has 3130 Blast hits to 2122 proteins in 368 species: Archae - 6; Bacteria - 639; Metazoa - 620; Fungi - 332; Plants - 367; Viruses - 5; Other Eukaryotes - 1161 (source: NCBI BLink).  protein_id AT2G02170.1p  transcript_id AT2G02170.1  protein_id AT2G02170.1p  transcript_id AT2G02170.1  
At2g02170	chr2:000558581	0.0	C/558581-558610,558254-558398,557598-558140,557062-557515,556898-556979,556595-556801	AT2G02170.2  CDS  gene_syn F5O4.6, F5O4_6  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product remorin family protein  note remorin family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal region (InterPro:IPR005516); BEST Arabidopsis thaliana protein match is: remorin family protein (TAIR:AT1G30320.1); Has 3130 Blast hits to 2122 proteins in 368 species: Archae - 6; Bacteria - 639; Metazoa - 620; Fungi - 332; Plants - 367; Viruses - 5; Other Eukaryotes - 1161 (source: NCBI BLink).  protein_id AT2G02170.2p  transcript_id AT2G02170.2  protein_id AT2G02170.2p  transcript_id AT2G02170.2  
At2g02180	chr2:000560976	0.0	W/560976-561170,561248-561338,561417-561469,561559-561651,561741-561812,561892-561964,562051-562096,562363-562426,562511-562564,562706-562783,562869-562961	AT2G02180.1  CDS  gene_syn F5O4.5, F5O4_5, TOBAMOVIRUS MULTIPLICATION PROTEIN 3, TOM3  gene TOM3  function Necessary for the efficient multiplication of tobamoviruses.  go_component endomembrane system|GO:0012505||IEA  go_process viral replication complex formation and maintenance|GO:0046786|11836427|IMP  go_function protein binding|GO:0005515|11836427|IPI  product TOM3; protein binding  note TOM3; FUNCTIONS IN: protein binding; INVOLVED IN: viral replication complex formation and maintenance; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana protein match is: THH1 (TOM THREE HOMOLOG 1); virion binding (TAIR:AT1G14530.2); Has 160 Blast hits to 160 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 111; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT2G02180.1p  transcript_id AT2G02180.1  protein_id AT2G02180.1p  transcript_id AT2G02180.1  
At2g02190	chr2:000567873	0.0	W/567873-569698	AT2G02190.1  mRNA_TE_gene  pseudo  gene_syn F5O4.4, F5O4_4  note Transposable element gene, Mutator-like transposase family, has a 1.3e-81 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g02200	chr2:000570439	0.0	C/570439-574368	AT2G02200.1  mRNA_TE_gene  pseudo  gene_syn F5O4.3, F5O4_3  note Transposable element gene, pseudogene, hypothetical protein, similar to At2g04970, At2g15200, At1g32830, At2g14140, At3g30450, At4g03990, At5g34895, At3g47270  
At2g02205	chr2:000576059	0.0	C/576059-576590	AT2G02205.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g02210	chr2:000577381	0.0	C/577381-582050	AT2G02210.1  mRNA_TE_gene  pseudo  gene_syn F5O4.2, F5O4_2  note Transposable element gene, pseudogene, Ulp1 protease family, contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain; similar to At1g32840, At4g04010, At2g06430, At2g15140, At2g04980, At2g14130, At3g44500, At2g15190, At3g47260, At5g34900, At3g29210, At3g32900  
At2g02220	chr2:000584098	0.0	C/584098-587124	AT2G02220.1  CDS  gene_syn ATPSKR1, PHYTOSULFOKIN RECEPTOR, PHYTOSULFOKIN RECEPTOR 1, PSK RECEPTOR 1, PSKR1  gene PSKR1  function Encodes a protein interacting with phytosulfokine, a five amino acid sulfated peptide (YIYTQ).  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_process response to wounding|GO:0009611|17989228|IGI  go_function peptide receptor activity|GO:0001653|16829587|IDA  go_function peptide receptor activity|GO:0001653|17989228|IMP  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product PSKR1 (PHYTOSULFOKIN RECEPTOR 1); ATP binding / peptide receptor/ protein serine/threonine kinase  note PHYTOSULFOKIN RECEPTOR 1 (PSKR1); FUNCTIONS IN: peptide receptor activity, protein serine/threonine kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation, response to wounding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT5G53890.1); Has 128686 Blast hits to 91763 proteins in 2772 species: Archae - 64; Bacteria - 10348; Metazoa - 49081; Fungi - 6472; Plants - 44381; Viruses - 380; Other Eukaryotes - 17960 (source: NCBI BLink).  protein_id AT2G02220.1p  transcript_id AT2G02220.1  protein_id AT2G02220.1p  transcript_id AT2G02220.1  
At2g02230	chr2:000591260	0.0	C/591260-591595,591042-591160,590393-590948	AT2G02230.1  CDS  gene_syn AtPP2-B1, Phloem protein 2-B1, T16F16.2, T16F16_2  gene AtPP2-B1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function carbohydrate binding|GO:0030246|12529520|ISS  product AtPP2-B1 (Phloem protein 2-B1); carbohydrate binding  note Phloem protein 2-B1 (AtPP2-B1); FUNCTIONS IN: carbohydrate binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: MEE66 (maternal effect embryo arrest 66) (TAIR:AT2G02240.1); Has 319 Blast hits to 306 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 319; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G02230.1p  transcript_id AT2G02230.1  protein_id AT2G02230.1p  transcript_id AT2G02230.1  
At2g02240	chr2:000593180	0.0	C/593180-593602,592854-592972,592359-592779	AT2G02240.1  CDS  gene_syn MEE66, T16F16.3, maternal effect embryo arrest 66  gene MEE66  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function molecular_function|GO:0003674||ND  product MEE66 (maternal effect embryo arrest 66)  note maternal effect embryo arrest 66 (MEE66); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: AtPP2-B2 (Phloem protein 2-B2); carbohydrate binding (TAIR:AT2G02250.1); Has 336 Blast hits to 322 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 336; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G02240.1p  transcript_id AT2G02240.1  protein_id AT2G02240.1p  transcript_id AT2G02240.1  
At2g02250	chr2:000595445	0.0	C/595445-595825,595168-595289,594655-595084	AT2G02250.1  CDS  gene_syn AtPP2-B2, Phloem protein 2-B2, T16F16.4, T16F16_4  gene AtPP2-B2  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function carbohydrate binding|GO:0030246|12529520|ISS  product AtPP2-B2 (Phloem protein 2-B2); carbohydrate binding  note Phloem protein 2-B2 (AtPP2-B2); FUNCTIONS IN: carbohydrate binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: MEE66 (maternal effect embryo arrest 66) (TAIR:AT2G02240.1); Has 330 Blast hits to 317 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 330; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G02250.1p  transcript_id AT2G02250.1  protein_id AT2G02250.1p  transcript_id AT2G02250.1  
At2g02260	chr2:000596454	0.0	C/596454-597760	AT2G02260.1  mRNA_TE_gene  pseudo  gene_syn T16F16.5  note Transposable element gene, pseudogene, hypothetical protein  
At2g02270	chr2:000598112	0.0	C/598112-599525	AT2G02270.1  pseudogenic_transcript  pseudo  gene_syn ATPP2-B3, T16F16.6, T16F16_6  gene ATPP2-B3  note pseudogene, F-box protein (SKP1 interacting partner 3-related), contains similarity to SKP1 interacting partner 3 GI:10716951 from (Arabidopsis thaliana); blastp match of 37% identity and 4.7e-33 P-value to GP|28812128|dbj|BAC64996.1||AP004461 P0443G08.20 {Oryza sativa (japonica cultivar-group)}  
At2g02280	chr2:000601242	0.0	C/601242-601439,600491-600727	AT2G02280.1  CDS  gene_syn AtPP2-B4, Phloem protein 2-B4, T16F16.7, T16F16_7  gene AtPP2-B4  go_process biological_process|GO:0008150||ND  go_function carbohydrate binding|GO:0030246|12529520|ISS  product AtPP2-B4 (Phloem protein 2-B4); carbohydrate binding  note Phloem protein 2-B4 (AtPP2-B4); FUNCTIONS IN: carbohydrate binding; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: MEE66 (maternal effect embryo arrest 66) (TAIR:AT2G02240.1); Has 103 Blast hits to 103 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G02280.1p  transcript_id AT2G02280.1  protein_id AT2G02280.1p  transcript_id AT2G02280.1  
At2g02290	chr2:000604453	0.0	W/604453-605361	AT2G02290.1  CDS  gene_syn T16F16.8, T16F16_8  go_component nucleus|GO:0005634||IEA  go_function phosphoprotein phosphatase activity|GO:0004721||IEA  go_process biological_process|GO:0008150||ND  product NLI interacting factor (NIF) family protein  note NLI interacting factor (NIF) family protein; FUNCTIONS IN: phosphoprotein phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: FCP1-like phosphatase, phosphatase domain (InterPro:IPR011947), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: NLI interacting factor (NIF) family protein (TAIR:AT5G23470.1); Has 590 Blast hits to 590 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 94; Plants - 118; Viruses - 0; Other Eukaryotes - 260 (source: NCBI BLink).  protein_id AT2G02290.1p  transcript_id AT2G02290.1  protein_id AT2G02290.1p  transcript_id AT2G02290.1  
At2g02300	chr2:000607481	0.0	C/607481-607825,607073-607191,606561-606951	AT2G02300.1  CDS  gene_syn AtPP2-B5, Phloem protein 2-B5, T16F16.9, T16F16_9  gene AtPP2-B5  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function carbohydrate binding|GO:0030246|12529520|ISS  product AtPP2-B5 (Phloem protein 2-B5); carbohydrate binding  note Phloem protein 2-B5 (AtPP2-B5); FUNCTIONS IN: carbohydrate binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: AtPP2-B6 (Phloem protein 2-B6); carbohydrate binding (TAIR:AT2G02310.1); Has 293 Blast hits to 285 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 293; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G02300.1p  transcript_id AT2G02300.1  protein_id AT2G02300.1p  transcript_id AT2G02300.1  
At2g02310	chr2:000609756	0.0	C/609756-610130,609496-609614,608759-609188	AT2G02310.1  CDS  gene_syn AtPP2-B6, Phloem protein 2-B6, T16F16.10, T16F16_10  gene AtPP2-B6  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function carbohydrate binding|GO:0030246|12529520|ISS  product AtPP2-B6 (Phloem protein 2-B6); carbohydrate binding  note Phloem protein 2-B6 (AtPP2-B6); FUNCTIONS IN: carbohydrate binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, leaf whorl, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: MEE66 (maternal effect embryo arrest 66) (TAIR:AT2G02240.1); Has 285 Blast hits to 270 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 285; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G02310.1p  transcript_id AT2G02310.1  protein_id AT2G02310.1p  transcript_id AT2G02310.1  
At2g02320	chr2:000611461	0.0	C/611461-611820,611103-611215,610560-611010	AT2G02320.1  CDS  gene_syn AtPP2-B7, Phloem protein 2-B7, T16F16.11, T16F16_11  gene AtPP2-B7  go_process biological_process|GO:0008150||ND  go_function carbohydrate binding|GO:0030246|12529520|ISS  product AtPP2-B7 (Phloem protein 2-B7); carbohydrate binding  note Phloem protein 2-B7 (AtPP2-B7); FUNCTIONS IN: carbohydrate binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: AtPP2-B8 (Phloem protein 2-B8); carbohydrate binding (TAIR:AT2G02340.1); Has 278 Blast hits to 267 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 278; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G02320.1p  transcript_id AT2G02320.1  protein_id AT2G02320.1p  transcript_id AT2G02320.1  
At2g02330	chr2:000613725	0.0	C/613725-614592	AT2G02330.1  pseudogenic_transcript  pseudo  gene_syn T16F16.12  note pseudogene, similar to P0443G08.20, blastp match of 37% identity and 7.2e-16 P-value to GP|28812128|dbj|BAC64996.1||AP004461 P0443G08.20 {Oryza sativa (japonica cultivar-group)}  
At2g02340	chr2:000616921	0.0	C/616921-617274,616627-616745,616088-616532	AT2G02340.1  CDS  gene_syn AtPP2-B8, Phloem protein 2-B8, T16F16.13, T16F16_13  gene AtPP2-B8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function carbohydrate binding|GO:0030246|12529520|ISS  product AtPP2-B8 (Phloem protein 2-B8); carbohydrate binding  note Phloem protein 2-B8 (AtPP2-B8); FUNCTIONS IN: carbohydrate binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: AtPP2-B7 (Phloem protein 2-B7); carbohydrate binding (TAIR:AT2G02320.1); Has 327 Blast hits to 317 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 327; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G02340.1p  transcript_id AT2G02340.1  protein_id AT2G02340.1p  transcript_id AT2G02340.1  
At2g02350	chr2:000618807	0.0	C/618807-618809,618510-618631,617972-618422	AT2G02350.1  CDS  gene_syn ATPP2-B9, AtPP2-B9, Phloem protein 2-B9, SKIP3, SKP1 INTERACTING PARTNER 3, T16F16.14, T16F16_14  gene SKIP3  function encodes a protein containing an F-box domain and physically interacts with SCF subunit SKP1/ASK1. The protein also exhibits similarity in sequence to phloem protein 2 (PP2) from cucumber.  go_process biological_process|GO:0008150||ND  go_function carbohydrate binding|GO:0030246|12529520|ISS  product SKIP3 (SKP1 INTERACTING PARTNER 3); carbohydrate binding  note SKP1 INTERACTING PARTNER 3 (SKIP3); FUNCTIONS IN: carbohydrate binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: AtPP2-B10 (Phloem protein 2-B10); carbohydrate binding (TAIR:AT2G02360.1); Has 176 Blast hits to 169 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 176; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G02350.1p  transcript_id AT2G02350.1  protein_id AT2G02350.1p  transcript_id AT2G02350.1  
At2g02360	chr2:000620455	0.0	C/620455-620736,620205-620323,619699-620116	AT2G02360.1  CDS  gene_syn AtPP2-B10, Phloem protein 2-B10, T16F16.15, T16F16_15  gene AtPP2-B10  go_component cellular_component|GO:0005575||ND  go_function carbohydrate binding|GO:0030246|12529520|ISS  product AtPP2-B10 (Phloem protein 2-B10); carbohydrate binding  note Phloem protein 2-B10 (AtPP2-B10); FUNCTIONS IN: carbohydrate binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: AtPP2-B8 (Phloem protein 2-B8); carbohydrate binding (TAIR:AT2G02340.1); Has 336 Blast hits to 323 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 332; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G02360.1p  transcript_id AT2G02360.1  protein_id AT2G02360.1p  transcript_id AT2G02360.1  
At2g02370	chr2:000621841	0.0	W/621841-622089,622194-622430,622527-622744,622826-623084	AT2G02370.1  CDS  gene_syn T16F16.16, T16F16_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12450.1); Has 1745 Blast hits to 1745 proteins in 446 species: Archae - 2; Bacteria - 792; Metazoa - 108; Fungi - 97; Plants - 119; Viruses - 0; Other Eukaryotes - 627 (source: NCBI BLink).  protein_id AT2G02370.1p  transcript_id AT2G02370.1  protein_id AT2G02370.1p  transcript_id AT2G02370.1  
At2g02370	chr2:000621841	0.0	W/621841-622089,622194-622430,622527-622744,622826-623084	AT2G02370.2  CDS  gene_syn T16F16.16, T16F16_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12450.1); Has 1745 Blast hits to 1745 proteins in 446 species: Archae - 2; Bacteria - 792; Metazoa - 108; Fungi - 97; Plants - 119; Viruses - 0; Other Eukaryotes - 627 (source: NCBI BLink).  protein_id AT2G02370.2p  transcript_id AT2G02370.2  protein_id AT2G02370.2p  transcript_id AT2G02370.2  
At2g02380	chr2:000626878	0.0	W/626878-626880,626963-627059,627137-627193,627312-627397,627488-627559,627696-627749,627840-627915,628044-628105,628182-628241,628465-628569	AT2G02380.1  CDS  gene_syn ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE (CLASS ZETA) 2, ATGSTZ2, T16F16.17, T16F16_17  gene ATGSTZ2  function Encodes glutathione transferase belonging to the zeta class of GSTs. Naming convention according to Wagner et al. (2002).  go_function catalytic activity|GO:0003824||IEA  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTZ2; catalytic/ glutathione transferase  note ATGSTZ2; FUNCTIONS IN: glutathione transferase activity, catalytic activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Maleylacetoacetate isomerase (InterPro:IPR005955), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTZ1 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE ZETA 1); catalytic/ glutathione transferase (TAIR:AT2G02390.1); Has 12596 Blast hits to 12578 proteins in 999 species: Archae - 0; Bacteria - 6206; Metazoa - 1955; Fungi - 323; Plants - 1314; Viruses - 0; Other Eukaryotes - 2798 (source: NCBI BLink).  protein_id AT2G02380.1p  transcript_id AT2G02380.1  protein_id AT2G02380.1p  transcript_id AT2G02380.1  
At2g02390	chr2:000629015	0.0	W/629015-629017,629114-629201,629297-629353,629518-629624,629720-629791,629950-630003,630090-630165,630312-630373,630530-630589,630848-630955	AT2G02390.3  CDS  gene_syn ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE ZETA 1, ATGSTZ1, GLUTATHIONE S-TRANSFERASE 18, GST18, T16F16.18, T16F16_18  gene ATGSTZ1  function Encodes glutathione transferase belonging to the zeta class of GSTs. Naming convention according to Wagner et al. (2002). The protein undergoes spontaneous thiolation following treatment with the oxidant tert-butylhydroperoxide.  go_function catalytic activity|GO:0003824||IEA  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTZ1 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE ZETA 1); catalytic/ glutathione transferase  note ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE ZETA 1 (ATGSTZ1); FUNCTIONS IN: glutathione transferase activity, catalytic activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Maleylacetoacetate isomerase (InterPro:IPR005955), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTZ2; catalytic/ glutathione transferase (TAIR:AT2G02380.1); Has 9955 Blast hits to 9947 proteins in 946 species: Archae - 0; Bacteria - 4920; Metazoa - 1771; Fungi - 193; Plants - 1135; Viruses - 0; Other Eukaryotes - 1936 (source: NCBI BLink).  protein_id AT2G02390.3p  transcript_id AT2G02390.3  protein_id AT2G02390.3p  transcript_id AT2G02390.3  
At2g02390	chr2:000629015	0.0	W/629015-629017,629114-629201,629297-629353,629539-629624,629720-629791,629950-630003,630090-630165,630312-630373,630530-630589,630848-630955	AT2G02390.1  CDS  gene_syn ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE ZETA 1, ATGSTZ1, GLUTATHIONE S-TRANSFERASE 18, GST18, T16F16.18, T16F16_18  gene ATGSTZ1  function Encodes glutathione transferase belonging to the zeta class of GSTs. Naming convention according to Wagner et al. (2002). The protein undergoes spontaneous thiolation following treatment with the oxidant tert-butylhydroperoxide.  go_function catalytic activity|GO:0003824||IEA  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTZ1 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE ZETA 1); catalytic/ glutathione transferase  note ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE ZETA 1 (ATGSTZ1); FUNCTIONS IN: glutathione transferase activity, catalytic activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Maleylacetoacetate isomerase (InterPro:IPR005955), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTZ2; catalytic/ glutathione transferase (TAIR:AT2G02380.1); Has 12615 Blast hits to 12597 proteins in 1011 species: Archae - 0; Bacteria - 6050; Metazoa - 1975; Fungi - 289; Plants - 1260; Viruses - 0; Other Eukaryotes - 3041 (source: NCBI BLink).  protein_id AT2G02390.1p  transcript_id AT2G02390.1  protein_id AT2G02390.1p  transcript_id AT2G02390.1  
At2g02390	chr2:000629015	0.0	W/629015-629017,629114-629201,629297-629353,629539-629624,629720-629791,629950-630003,630090-630165,630312-630373,630530-630607	AT2G02390.2  CDS  gene_syn ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE ZETA 1, ATGSTZ1, GLUTATHIONE S-TRANSFERASE 18, GST18, T16F16.18, T16F16_18  gene ATGSTZ1  function Encodes glutathione transferase belonging to the zeta class of GSTs. Naming convention according to Wagner et al. (2002). The protein undergoes spontaneous thiolation following treatment with the oxidant tert-butylhydroperoxide.  go_function catalytic activity|GO:0003824||IEA  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTZ1 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE ZETA 1); catalytic/ glutathione transferase  note ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE ZETA 1 (ATGSTZ1); FUNCTIONS IN: glutathione transferase activity, catalytic activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Maleylacetoacetate isomerase (InterPro:IPR005955), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTZ2; catalytic/ glutathione transferase (TAIR:AT2G02380.1); Has 11966 Blast hits to 11948 proteins in 997 species: Archae - 0; Bacteria - 5549; Metazoa - 1947; Fungi - 266; Plants - 1253; Viruses - 0; Other Eukaryotes - 2951 (source: NCBI BLink).  protein_id AT2G02390.2p  transcript_id AT2G02390.2  protein_id AT2G02390.2p  transcript_id AT2G02390.2  
At2g02400	chr2:000631985	0.0	C/631985-632449,631413-631904	AT2G02400.1  CDS  gene_syn T16F16.19, T16F16_19  go_component plasma membrane|GO:0005886|15060130|IDA  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  go_process lignin biosynthetic process|GO:0009809||ISS  go_function cinnamoyl-CoA reductase activity|GO:0016621||ISS  product cinnamoyl-CoA reductase family  note cinnamoyl-CoA reductase family; FUNCTIONS IN: coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamoyl-CoA reductase family (TAIR:AT5G58490.1); Has 11732 Blast hits to 11721 proteins in 1511 species: Archae - 246; Bacteria - 4991; Metazoa - 570; Fungi - 675; Plants - 1546; Viruses - 62; Other Eukaryotes - 3642 (source: NCBI BLink).  protein_id AT2G02400.1p  transcript_id AT2G02400.1  protein_id AT2G02400.1p  transcript_id AT2G02400.1  
At2g02410	chr2:000632713	0.0	W/632713-632874,633209-633280,633400-633524,633628-633791,633873-633942,634027-634081,634177-634260,634340-634378,634458-634613	AT2G02410.1  CDS  gene_syn AT2G02420, T16F16.20, T16F16_20  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF901 (InterPro:IPR010298); Has 460 Blast hits to 460 proteins in 230 species: Archae - 0; Bacteria - 437; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G02410.1p  transcript_id AT2G02410.1  protein_id AT2G02410.1p  transcript_id AT2G02410.1  
At2g02430	chr2:000635456	0.0	W/635456-636638	AT2G02430.1  pseudogenic_transcript  pseudo  gene_syn T16F16.22  note pseudogene, arginyl-tRNA synthetase  
At2g02440	chr2:000638012	0.0	W/638012-638151,638736-638867,639161-639305	AT2G02440.1  CDS  gene_syn T16F16.23, T16F16_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G02440.1p  transcript_id AT2G02440.1  protein_id AT2G02440.1p  transcript_id AT2G02440.1  
At2g02450	chr2:000648044	0.0	W/648044-648335,648666-648934,649966-650395,650501-650649	AT2G02450.1  CDS  gene_syn ANAC035, Arabidopsis NAC domain containing protein 34, Arabidopsis NAC domain containing protein 35, anac034  gene ANAC035  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ANAC035 (Arabidopsis NAC domain containing protein 35); transcription factor  note Arabidopsis NAC domain containing protein 34 (anac034); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac036 (Arabidopsis NAC domain containing protein 36); transcription factor (TAIR:AT2G17040.1); Has 3723 Blast hits to 3107 proteins in 100 species: Archae - 0; Bacteria - 3; Metazoa - 303; Fungi - 46; Plants - 1588; Viruses - 0; Other Eukaryotes - 1783 (source: NCBI BLink).  protein_id AT2G02450.1p  transcript_id AT2G02450.1  protein_id AT2G02450.1p  transcript_id AT2G02450.1  
At2g02450	chr2:000648044	0.0	W/648044-648335,648666-648934,649966-650649	AT2G02450.2  CDS  gene_syn ANAC035, Arabidopsis NAC domain containing protein 34, Arabidopsis NAC domain containing protein 35, anac034  gene ANAC035  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ANAC035 (Arabidopsis NAC domain containing protein 35); transcription factor  note Arabidopsis NAC domain containing protein 35 (ANAC035); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac036 (Arabidopsis NAC domain containing protein 36); transcription factor (TAIR:AT2G17040.1); Has 4308 Blast hits to 3454 proteins in 108 species: Archae - 0; Bacteria - 3; Metazoa - 327; Fungi - 54; Plants - 1588; Viruses - 5; Other Eukaryotes - 2331 (source: NCBI BLink).  protein_id AT2G02450.2p  transcript_id AT2G02450.2  protein_id AT2G02450.2p  transcript_id AT2G02450.2  
At2g02470	chr2:000652837	0.0	W/652837-652933,653108-653140,653322-653550,654136-654262,654337-654621	AT2G02470.1  CDS  gene_syn AL6, ALFIN-LIKE 6, T16F16.26, T16F16_26  gene AL6  function AL6 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.  go_component nucleus|GO:0005634|19154204|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function methylated histone residue binding|GO:0035064|19154204|ISS  product AL6 (ALFIN-LIKE 6); DNA binding / methylated histone residue binding  note ALFIN-LIKE 6 (AL6); FUNCTIONS IN: methylated histone residue binding, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: AL7 (ALFIN-LIKE 7); DNA binding / methylated histone residue binding (TAIR:AT1G14510.1); Has 1336 Blast hits to 1299 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 702; Fungi - 228; Plants - 328; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT2G02470.1p  transcript_id AT2G02470.1  protein_id AT2G02470.1p  transcript_id AT2G02470.1  
At2g02480	chr2:000661093	0.0	W/661093-663150,663240-663459,663674-664231,664322-664943,665057-665141,665224-665337	AT2G02480.1  CDS  gene_syn DNA POLYMERASE III-LIKE PROTEIN, GAMMA SUBUNIT, STI, STICHEL, T8K22.22, T8K22_22  gene STI  function STICHEL mutant shows trichomes with fewer than normal branches.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed DNA polymerase activity|GO:0003887||IEA  go_function ATP binding|GO:0005524||IEA  go_process trichome differentiation|GO:0010026|10572032|IMP  go_process trichome branching|GO:0010091|10572032|IMP  product STI (STICHEL); ATP binding / DNA binding / DNA-directed DNA polymerase  note STICHEL (STI); FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity, ATP binding; INVOLVED IN: trichome branching, trichome differentiation; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III clamp loader subunit, C-terminal (InterPro:IPR008921), DNA polymerase III, subunits gamma and tau (InterPro:IPR012763); BEST Arabidopsis thaliana protein match is: DNA polymerase-related (TAIR:AT1G14460.1); Has 10515 Blast hits to 10175 proteins in 1551 species: Archae - 270; Bacteria - 4534; Metazoa - 512; Fungi - 354; Plants - 153; Viruses - 34; Other Eukaryotes - 4658 (source: NCBI BLink).  protein_id AT2G02480.1p  transcript_id AT2G02480.1  protein_id AT2G02480.1p  transcript_id AT2G02480.1  
At2g02490	chr2:000667131	0.0	W/667131-668048	AT2G02490.1  CDS  gene_syn T8K22.21, T8K22_21  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G02498.1); Has 14244 Blast hits to 7703 proteins in 504 species: Archae - 18; Bacteria - 716; Metazoa - 6574; Fungi - 2265; Plants - 2491; Viruses - 496; Other Eukaryotes - 1684 (source: NCBI BLink).  protein_id AT2G02490.1p  transcript_id AT2G02490.1  protein_id AT2G02490.1p  transcript_id AT2G02490.1  
At2g02498	chr2:000669776	0.0	W/669776-670102	AT2G02498.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system.  protein_id AT2G02498.1p  transcript_id AT2G02498.1  protein_id AT2G02498.1p  transcript_id AT2G02498.1  
At2g02500	chr2:000673016	0.0	C/673016-673124,672826-672923,672598-672669,672448-672503,672165-672244,671987-672069,671793-671870,671631-671699,671479-671547,671356-671402,671180-671270,671054-671110	AT2G02500.1  CDS  gene_syn 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLTRANSFERASE, 4-DIPHOSPHOCYTIDYL-2C-METHYL-D-ERYTHRITOL SYNTHASE, ATMEPCT, ISPD, MCT, T8K22.20, T8K22_20  gene ISPD  function Encodes a protein with 4-Diphosphocytidyl-2C-methyl-D-erythritol synthase activity. The enzyme has an absolute requirement for divalent cations (Mg2+ reaches the highest catalytic activity).  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component plastid|GO:0009536||NAS  go_process response to light stimulus|GO:0009416|15863698|IEP  go_process isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway|GO:0019288|10841550|TAS  go_function 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity|GO:0050518|10841550|IDA  product ISPD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase  note ISPD; FUNCTIONS IN: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity; INVOLVED IN: response to light stimulus, isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway; LOCATED IN: chloroplast, chloroplast stroma, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase (InterPro:IPR001228), 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site (InterPro:IPR018294); Has 4391 Blast hits to 4386 proteins in 1228 species: Archae - 12; Bacteria - 2603; Metazoa - 41; Fungi - 4; Plants - 34; Viruses - 0; Other Eukaryotes - 1697 (source: NCBI BLink).  protein_id AT2G02500.1p  transcript_id AT2G02500.1  protein_id AT2G02500.1p  transcript_id AT2G02500.1  
At2g02510	chr2:000673338	0.0	W/673338-673556	AT2G02510.1  CDS  gene_syn T8K22.19, T8K22_19  go_component mitochondrion|GO:0005739|15276431|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14450.1); Has 38 Blast hits to 38 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G02510.1p  transcript_id AT2G02510.1  protein_id AT2G02510.1p  transcript_id AT2G02510.1  
At2g02515	chr2:000675270	0.0	W/675270-675545	AT2G02515.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: embryo; EXPRESSED DURING: C globular stage; Has 13 Blast hits to 12 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G02515.1p  transcript_id AT2G02515.1  protein_id AT2G02515.1p  transcript_id AT2G02515.1  
At2g02520	chr2:000678064	0.0	C/678064-678145,676771-677324	AT2G02520.1  CDS  gene_syn T8K22.18, T8K22_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, stamen, leaf; EXPRESSED DURING: LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43730.1); Has 338 Blast hits to 336 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 338; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G02520.1p  transcript_id AT2G02520.1  protein_id AT2G02520.1p  transcript_id AT2G02520.1  
At2g02540	chr2:000684302	0.0	W/684302-685234	AT2G02540.1  CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 21, ATHB21, T8K22.16, T8K22_16, ZFHD4, ZINC FINGER HOMEODOMAIN 4  gene ATHB21  function Zinc finger homeobox protein. Expressed in vascular tissue. In a yeast one hybrid system was not able to transactivate a reporter gene.  go_component nucleus|GO:0005634||IEA  go_process positive regulation of transcription|GO:0045941|17233795|IPI  go_function DNA binding|GO:0003677|11289511|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function transcription activator activity|GO:0016563|17233795|IPI  product ATHB21 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 21); DNA binding / transcription activator/ transcription factor  note ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 21 (ATHB21); FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: positive regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein Cys/His-rich dimerisation region (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: AtHB31 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 31); DNA binding / transcription factor (TAIR:AT1G14440.2); Has 271 Blast hits to 267 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 252; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G02540.1p  transcript_id AT2G02540.1  protein_id AT2G02540.1p  transcript_id AT2G02540.1  
At2g02550	chr2:000687384	0.0	W/687384-687818,687904-687909	AT2G02550.1  CDS  gene_syn T8K22.15, T8K22_15  go_process DNA repair|GO:0006281||IEA  go_function nuclease activity|GO:0004518||IEA  go_process DNA repair|GO:0006281||ISS  go_function nuclease activity|GO:0004518||ISS  product nuclease  note nuclease; FUNCTIONS IN: nuclease activity; INVOLVED IN: DNA repair; CONTAINS InterPro DOMAIN/s: XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084); BEST Arabidopsis thaliana protein match is: DNA binding / catalytic/ nuclease (TAIR:AT1G29630.2); Has 273 Blast hits to 273 proteins in 117 species: Archae - 2; Bacteria - 0; Metazoa - 100; Fungi - 84; Plants - 23; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT2G02550.1p  transcript_id AT2G02550.1  protein_id AT2G02550.1p  transcript_id AT2G02550.1  
At2g02550	chr2:000687384	0.0	W/687384-687818,688597-688764	AT2G02550.2  CDS  gene_syn T8K22.15, T8K22_15  go_process DNA repair|GO:0006281||IEA  go_function nuclease activity|GO:0004518||IEA  go_process DNA repair|GO:0006281||ISS  go_function nuclease activity|GO:0004518||ISS  product nuclease  note nuclease; FUNCTIONS IN: nuclease activity; INVOLVED IN: DNA repair; CONTAINS InterPro DOMAIN/s: XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084).  protein_id AT2G02550.2p  transcript_id AT2G02550.2  protein_id AT2G02550.2p  transcript_id AT2G02550.2  
At2g02560	chr2:000690345	0.0	W/690345-690380,690463-690638,690739-690946,691236-691401,691680-691809,691995-692109,692322-692479,692567-692690,692853-692903,692985-693067,693164-693248,693322-693423,693521-693619,693741-693851,694052-694135,694331-694471,694551-694643,694770-694891,694991-695153,695242-695481,695604-695852,695940-696116,696201-696347,696461-696577,696674-696842,696933-697010,697107-697342	AT2G02560.1  CDS  gene_syn ATCAND1, CAND1, CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED, CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED 1, ETA2, HEMIVENATA, HVE, T8K22.14, T8K22_14, TIP120  gene CAND1  function Arabidopsis thaliana homolog of human CAND1 (cullin-associated and neddylation-dissociated). Putative similarity to TBP-interacting protein TIP120. Ubiquitously expressed in plant tissues throughout development. T-DNA insertion mutant plants were completely sterile and resistant to sirtinol and auxin, but not to gibberellins or brassinolide. Displayed developmental phenotypes similar to those of axr1, namely, short petioles, downwardly curling leaves, shorter inflorescence. Required for SCF function and appears to modulate SCF complex cycling. Physically interacts with CUL1.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function binding|GO:0005488||IEA  go_process response to auxin stimulus|GO:0009733|15181201|IMP  go_process xylem and phloem pattern formation|GO:0010051|16943276|IMP  go_process vegetative to reproductive phase transition|GO:0010228|15208391|IMP  product CAND1 (CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED); binding  note CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED (CAND1); FUNCTIONS IN: binding; INVOLVED IN: xylem and phloem pattern formation, response to auxin stimulus, vegetative to reproductive phase transition; LOCATED IN: cell wall, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), TATA-binding protein interacting (TIP20) (InterPro:IPR013932); Has 452 Blast hits to 429 proteins in 127 species: Archae - 0; Bacteria - 9; Metazoa - 209; Fungi - 120; Plants - 51; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT2G02560.1p  transcript_id AT2G02560.1  protein_id AT2G02560.1p  transcript_id AT2G02560.1  
At2g02560	chr2:000690345	0.0	W/690345-690380,690469-690638,690739-690946,691236-691401,691680-691809,691995-692109,692322-692479,692567-692690,692853-692903,692985-693067,693164-693248,693322-693423,693521-693619,693741-693851,694052-694135,694331-694471,694551-694643,694770-694891,694991-695153,695242-695481,695604-695852,695940-696116,696201-696347,696461-696577,696674-696842,696933-697010,697107-697342	AT2G02560.2  CDS  gene_syn ATCAND1, CAND1, CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED, CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED 1, ETA2, HEMIVENATA, HVE, T8K22.14, T8K22_14, TIP120  gene CAND1  function Arabidopsis thaliana homolog of human CAND1 (cullin-associated and neddylation-dissociated). Putative similarity to TBP-interacting protein TIP120. Ubiquitously expressed in plant tissues throughout development. T-DNA insertion mutant plants were completely sterile and resistant to sirtinol and auxin, but not to gibberellins or brassinolide. Displayed developmental phenotypes similar to those of axr1, namely, short petioles, downwardly curling leaves, shorter inflorescence. Required for SCF function and appears to modulate SCF complex cycling. Physically interacts with CUL1.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function binding|GO:0005488||IEA  go_process response to auxin stimulus|GO:0009733|15181201|IMP  go_process xylem and phloem pattern formation|GO:0010051|16943276|IMP  go_process vegetative to reproductive phase transition|GO:0010228|15208391|IMP  product CAND1 (CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED); binding  note CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED (CAND1); FUNCTIONS IN: binding; INVOLVED IN: xylem and phloem pattern formation, response to auxin stimulus, vegetative to reproductive phase transition; LOCATED IN: cell wall, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), TATA-binding protein interacting (TIP20) (InterPro:IPR013932); Has 452 Blast hits to 429 proteins in 127 species: Archae - 0; Bacteria - 9; Metazoa - 209; Fungi - 120; Plants - 51; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT2G02560.2p  transcript_id AT2G02560.2  protein_id AT2G02560.2p  transcript_id AT2G02560.2  
At2g02570	chr2:000700717	0.0	C/700717-700794,700247-700315,699531-699656,699241-699323,699062-699137,698811-698987,698600-698728,698361-698525	AT2G02570.1  CDS  gene_syn T8K22.13, T8K22_13  go_function nucleic acid binding|GO:0003676||IEA  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor subgroup (InterPro:IPR018351), Tudor (InterPro:IPR002999); Has 231 Blast hits to 231 proteins in 107 species: Archae - 0; Bacteria - 5; Metazoa - 106; Fungi - 55; Plants - 29; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT2G02570.1p  transcript_id AT2G02570.1  protein_id AT2G02570.1p  transcript_id AT2G02570.1  
At2g02570	chr2:000700717	0.0	C/700717-700794,700247-700315,699531-699656,699241-699323,699062-699137,698811-698987,698600-698728,698361-698525	AT2G02570.2  CDS  gene_syn T8K22.13, T8K22_13  go_function nucleic acid binding|GO:0003676||IEA  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor subgroup (InterPro:IPR018351), Tudor (InterPro:IPR002999); Has 231 Blast hits to 231 proteins in 107 species: Archae - 0; Bacteria - 5; Metazoa - 106; Fungi - 55; Plants - 29; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT2G02570.2p  transcript_id AT2G02570.2  protein_id AT2G02570.2p  transcript_id AT2G02570.2  
At2g02570	chr2:000700717	0.0	C/700717-700794,700247-700315,699531-699656,699241-699323,699062-699137,698811-698987,698600-698728,698361-698525	AT2G02570.4  CDS  gene_syn T8K22.13, T8K22_13  go_function nucleic acid binding|GO:0003676||IEA  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor subgroup (InterPro:IPR018351), Tudor (InterPro:IPR002999); Has 231 Blast hits to 231 proteins in 107 species: Archae - 0; Bacteria - 5; Metazoa - 106; Fungi - 55; Plants - 29; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT2G02570.4p  transcript_id AT2G02570.4  protein_id AT2G02570.4p  transcript_id AT2G02570.4  
At2g02570	chr2:000700717	0.0	C/700717-700794,700247-700315,699531-699656,699241-699323,699062-699137,698811-698987,698702-698728,698600-698665,698361-698525	AT2G02570.3  CDS  gene_syn T8K22.13, T8K22_13  go_function nucleic acid binding|GO:0003676||IEA  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor subgroup (InterPro:IPR018351), Tudor (InterPro:IPR002999); Has 221 Blast hits to 220 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 102; Fungi - 55; Plants - 29; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT2G02570.3p  transcript_id AT2G02570.3  protein_id AT2G02570.3p  transcript_id AT2G02570.3  
At2g02580	chr2:000701985	0.0	W/701985-702291,702391-702971,703047-703661	AT2G02580.1  CDS  gene_syn CYP71B9, CYTOCHROME P450, FAMILY 71, SUBFAMILY B, POLYPEPTIDE 9, T8K22.12, T8K22_12  gene CYP71B9  function member of CYP71B  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71B9; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71B9; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; EXPRESSED IN: carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973); BEST Arabidopsis thaliana protein match is: CYP71B37; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G26330.1); Has 22995 Blast hits to 22794 proteins in 1226 species: Archae - 23; Bacteria - 1767; Metazoa - 10400; Fungi - 4318; Plants - 5719; Viruses - 3; Other Eukaryotes - 765 (source: NCBI BLink).  protein_id AT2G02580.1p  transcript_id AT2G02580.1  protein_id AT2G02580.1p  transcript_id AT2G02580.1  
At2g02590	chr2:000704977	0.0	W/704977-705533,706077-706494	AT2G02590.1  CDS  gene_syn T8K22.11, T8K22_11  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Putative small multi-drug export (InterPro:IPR009577); Has 213 Blast hits to 213 proteins in 89 species: Archae - 35; Bacteria - 146; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT2G02590.1p  transcript_id AT2G02590.1  protein_id AT2G02590.1p  transcript_id AT2G02590.1  
At2g02600	chr2:000706796	0.0	W/706796-706868	AT2G02600.1  tRNA  gene_syn 24336.TRNA-ALA-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: AGC)  transcript_id AT2G02600.1  
At2g02610	chr2:000710722	0.0	W/710722-712605	AT2G02610.1  CDS  gene_syn T8K22.9, T8K22_9  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: pedicel, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT2G02640.1); Has 1172 Blast hits to 470 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 1160; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT2G02610.1p  transcript_id AT2G02610.1  protein_id AT2G02610.1p  transcript_id AT2G02610.1  
At2g02620	chr2:000717686	0.0	W/717686-719227	AT2G02620.1  CDS  gene_syn T8K22.8, T8K22_8  go_component intracellular|GO:0005622||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product DC1 domain-containing protein / PHD finger protein-related  note DC1 domain-containing protein / PHD finger protein-related; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular signaling cascade; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, RanBP2-type (InterPro:IPR001876), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT2G02610.1); Has 1062 Blast hits to 462 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1056; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G02620.1p  transcript_id AT2G02620.1  protein_id AT2G02620.1p  transcript_id AT2G02620.1  
At2g02630	chr2:000724163	0.0	W/724163-725485	AT2G02630.1  CDS  gene_syn T8K22.7, T8K22_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT2G02610.1); Has 1072 Blast hits to 446 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1067; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G02630.1p  transcript_id AT2G02630.1  protein_id AT2G02630.1p  transcript_id AT2G02630.1  
At2g02640	chr2:000732388	0.0	W/732388-734271	AT2G02640.1  CDS  gene_syn T8K22.6, T8K22_6  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT2G02610.1); Has 1173 Blast hits to 466 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 2; Plants - 1160; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT2G02640.1p  transcript_id AT2G02640.1  protein_id AT2G02640.1p  transcript_id AT2G02640.1  
At2g02650	chr2:000735411	0.0	W/735411-735426,735465-736546	AT2G02650.1  CDS  gene_syn T8K22.5, T8K22_5  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product reverse transcriptase-related  note reverse transcriptase-related; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT3G09510.1); Has 819 Blast hits to 808 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 816; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G02650.1p  transcript_id AT2G02650.1  protein_id AT2G02650.1p  transcript_id AT2G02650.1  
At2g02660	chr2:000738504	0.0	W/738504-739769	AT2G02660.1  CDS  gene_syn T8K22.4, T8K22_4  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G02890.1); Has 533 Blast hits to 502 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 531; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G02660.1p  transcript_id AT2G02660.1  protein_id AT2G02660.1p  transcript_id AT2G02660.1  
At2g02670	chr2:000742358	0.0	W/742358-743302	AT2G02670.1  pseudogenic_transcript  pseudo  gene_syn T8K22.3, T8K22_3  note pseudogene, hypothetical protein  
At2g02680	chr2:000745775	0.0	W/745775-747670,748520-748573	AT2G02680.1  CDS  gene_syn T8K22.2, T8K22_2  go_component intracellular|GO:0005622||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular signaling cascade; LOCATED IN: intracellular; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, RanBP2-type (InterPro:IPR001876), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT2G02610.1); Has 1304 Blast hits to 520 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 8; Plants - 1243; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT2G02680.1p  transcript_id AT2G02680.1  protein_id AT2G02680.1p  transcript_id AT2G02680.1  
At2g02690	chr2:000749936	0.0	W/749936-751449,751543-751900	AT2G02690.1  CDS  go_process intracellular signaling cascade|GO:0007242||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular signaling cascade; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT2G02680.1); Has 1123 Blast hits to 469 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 8; Plants - 1106; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G02690.1p  transcript_id AT2G02690.1  protein_id AT2G02690.1p  transcript_id AT2G02690.1  
At2g02700	chr2:000756443	0.0	W/756443-757942	AT2G02700.1  CDS  gene_syn T20F6.16, T20F6_16  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT2G02680.1); Has 1166 Blast hits to 444 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1164; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G02700.1p  transcript_id AT2G02700.1  protein_id AT2G02700.1p  transcript_id AT2G02700.1  
At2g02710	chr2:000760029	0.0	C/760029-760608,759691-759898,759539-759603,759378-759457,759249-759304,759091-759154,758812-758952	AT2G02710.2  CDS  gene_syn PAS/LOV PROTEIN, PAS/LOV PROTEIN A, PAS/LOV PROTEIN B, PAS/LOV PROTEIN C, PLP, PLPA, PLPB, PLPC, T20F6.15, T20F6_15  gene PLPB  function Encodes a putative blue light receptor protein.  go_process two-component signal transduction system (phosphorelay)|GO:0000160||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process signal transduction|GO:0007165||IEA  go_function two-component sensor activity|GO:0000155||IEA  go_function signal transducer activity|GO:0004871||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process signal transduction|GO:0007165||ISS  go_function signal transducer activity|GO:0004871||ISS  product PLPB (PAS/LOV PROTEIN B); signal transducer/ two-component sensor  note PAS/LOV PROTEIN A (PLPA); FUNCTIONS IN: two-component sensor activity, signal transducer activity; INVOLVED IN: signal transduction, regulation of transcription, DNA-dependent, two-component signal transduction system (phosphorelay); LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), PAS-associated, C-terminal (InterPro:IPR000700); BEST Arabidopsis thaliana protein match is: PHOT2 (PHOTOTROPIN 2); FMN binding / blue light photoreceptor/ kinase/ protein serine/threonine kinase (TAIR:AT5G58140.4); Has 5015 Blast hits to 2815 proteins in 561 species: Archae - 119; Bacteria - 3070; Metazoa - 745; Fungi - 266; Plants - 543; Viruses - 0; Other Eukaryotes - 272 (source: NCBI BLink).  protein_id AT2G02710.2p  transcript_id AT2G02710.2  protein_id AT2G02710.2p  transcript_id AT2G02710.2  
At2g02710	chr2:000760029	0.0	C/760029-760608,759691-759898,759539-759603,759378-759457,759249-759304,759091-759154,758925-758948	AT2G02710.3  CDS  gene_syn PAS/LOV PROTEIN, PAS/LOV PROTEIN A, PAS/LOV PROTEIN B, PAS/LOV PROTEIN C, PLP, PLPA, PLPB, PLPC, T20F6.15, T20F6_15  gene PLPB  function Encodes a putative blue light receptor protein.  go_process two-component signal transduction system (phosphorelay)|GO:0000160||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process signal transduction|GO:0007165||IEA  go_function two-component sensor activity|GO:0000155||IEA  go_function signal transducer activity|GO:0004871||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process signal transduction|GO:0007165||ISS  go_function signal transducer activity|GO:0004871||ISS  product PLPB (PAS/LOV PROTEIN B); signal transducer/ two-component sensor  note PAS/LOV PROTEIN C (PLPC); FUNCTIONS IN: two-component sensor activity, signal transducer activity; INVOLVED IN: signal transduction, regulation of transcription, DNA-dependent, two-component signal transduction system (phosphorelay); LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), PAS-associated, C-terminal (InterPro:IPR000700); BEST Arabidopsis thaliana protein match is: PHOT2 (PHOTOTROPIN 2); FMN binding / blue light photoreceptor/ kinase/ protein serine/threonine kinase (TAIR:AT5G58140.4); Has 4498 Blast hits to 2513 proteins in 528 species: Archae - 95; Bacteria - 2590; Metazoa - 742; Fungi - 264; Plants - 562; Viruses - 0; Other Eukaryotes - 245 (source: NCBI BLink).  protein_id AT2G02710.3p  transcript_id AT2G02710.3  protein_id AT2G02710.3p  transcript_id AT2G02710.3  
At2g02710	chr2:000760029	0.0	C/760029-760608,759691-759898,759539-759603,759378-759457,759249-759304,759091-759160,758812-758952	AT2G02710.1  CDS  gene_syn PAS/LOV PROTEIN, PAS/LOV PROTEIN A, PAS/LOV PROTEIN B, PAS/LOV PROTEIN C, PLP, PLPA, PLPB, PLPC, T20F6.15, T20F6_15  gene PLPB  function Encodes a putative blue light receptor protein.  go_process two-component signal transduction system (phosphorelay)|GO:0000160||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process signal transduction|GO:0007165||IEA  go_function two-component sensor activity|GO:0000155||IEA  go_function signal transducer activity|GO:0004871||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process signal transduction|GO:0007165||ISS  go_function signal transducer activity|GO:0004871||ISS  product PLPB (PAS/LOV PROTEIN B); signal transducer/ two-component sensor  note PAS/LOV PROTEIN B (PLPB); FUNCTIONS IN: two-component sensor activity, signal transducer activity; INVOLVED IN: signal transduction, regulation of transcription, DNA-dependent, two-component signal transduction system (phosphorelay); LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), PAS-associated, C-terminal (InterPro:IPR000700); BEST Arabidopsis thaliana protein match is: PHOT2 (PHOTOTROPIN 2); FMN binding / blue light photoreceptor/ kinase/ protein serine/threonine kinase (TAIR:AT5G58140.4); Has 4492 Blast hits to 2498 proteins in 517 species: Archae - 101; Bacteria - 2602; Metazoa - 735; Fungi - 266; Plants - 542; Viruses - 0; Other Eukaryotes - 246 (source: NCBI BLink).  protein_id AT2G02710.1p  transcript_id AT2G02710.1  protein_id AT2G02710.1p  transcript_id AT2G02710.1  
At2g02720	chr2:000763173	0.0	W/763173-763369,763469-764156,764268-764510,764595-764834	AT2G02720.1  CDS  gene_syn T20F6.14, T20F6_14  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function lyase activity|GO:0016829||ISS  go_function pectate lyase activity|GO:0030570||ISS  product pectate lyase family protein  note pectate lyase family protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectate lyase, N-terminal (InterPro:IPR007524), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: AT59; lyase/ pectate lyase (TAIR:AT1G14420.1); Has 973 Blast hits to 968 proteins in 170 species: Archae - 0; Bacteria - 414; Metazoa - 0; Fungi - 150; Plants - 399; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT2G02720.1p  transcript_id AT2G02720.1  protein_id AT2G02720.1p  transcript_id AT2G02720.1  
At2g02730	chr2:000767282	0.0	C/767282-767336,767131-767192,766972-767040,766818-766893,766664-766734,766473-766574,766281-766370,766121-766195,765860-765892,765649-765729,765445-765516,765280-765324	AT2G02730.1  CDS  gene_syn T20F6.13, T20F6_13  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458); BEST Arabidopsis thaliana protein match is: bZIP family transcription factor (TAIR:AT1G27000.1); Has 86 Blast hits to 86 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G02730.1p  transcript_id AT2G02730.1  protein_id AT2G02730.1p  transcript_id AT2G02730.1  
At2g02730	chr2:000767282	0.0	C/767282-767336,767131-767192,766972-767040,766818-766893,766664-766734,766473-766574,766281-766370,766121-766195,765860-765892,765649-765729,765445-765516,765280-765324	AT2G02730.2  CDS  gene_syn T20F6.13, T20F6_13  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458); BEST Arabidopsis thaliana protein match is: bZIP family transcription factor (TAIR:AT1G27000.1); Has 86 Blast hits to 86 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G02730.2p  transcript_id AT2G02730.2  protein_id AT2G02730.2p  transcript_id AT2G02730.2  
At2g02740	chr2:000769389	0.0	W/769389-769620,769718-769818,769905-769997,770376-770470,770559-770635,770715-770803,770874-770993	AT2G02740.1  CDS  gene_syn A. THALIANA WHIRLY 3, ATWHY3, PLASTID TRANSCRIPTIONALLY ACTIVE11, PTAC11, T20F6.12, T20F6_12, WHIRLY 3, WHY3  gene WHY3  function Encodes a homolog of the potato p24 protein. It shares the conserved KGKAAL domain, a putative DNA-binding domain, with potato p24 and is localized to the plastid and not the nucleus.  go_component nucleoid|GO:0009295|16326926|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component nucleus|GO:0005634|15967440|IDA  go_component chloroplast|GO:0009507|15967440|IDA  go_component plastid chromosome|GO:0009508|16326926|IDA  go_process defense response|GO:0006952|15708347|TAS  go_function DNA binding|GO:0003677|15967440|ISS  go_function DNA binding|GO:0003677||ISS  product WHY3 (WHIRLY 3); DNA binding  note WHIRLY 3 (WHY3); FUNCTIONS IN: DNA binding; INVOLVED IN: defense response; LOCATED IN: plastid chromosome, nucleus, chloroplast, nucleoid; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ssDNA-binding transcriptional regulator (InterPro:IPR009044), Plant transcription factor (InterPro:IPR013742); BEST Arabidopsis thaliana protein match is: WHY1 (WHIRLY 1); DNA binding / telomeric DNA binding (TAIR:AT1G14410.1); Has 60 Blast hits to 59 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT2G02740.1p  transcript_id AT2G02740.1  protein_id AT2G02740.1p  transcript_id AT2G02740.1  
At2g02740	chr2:000769389	0.0	W/769389-769620,769718-769818,769905-769997,770376-770470,770562-770635,770715-770803,770874-770993	AT2G02740.2  CDS  gene_syn A. THALIANA WHIRLY 3, ATWHY3, PLASTID TRANSCRIPTIONALLY ACTIVE11, PTAC11, T20F6.12, T20F6_12, WHIRLY 3, WHY3  gene WHY3  function Encodes a homolog of the potato p24 protein. It shares the conserved KGKAAL domain, a putative DNA-binding domain, with potato p24 and is localized to the plastid and not the nucleus.  go_component chloroplast|GO:0009507|18431481|IDA  go_component nucleus|GO:0005634|15967440|IDA  go_component chloroplast|GO:0009507|15967440|IDA  go_component plastid chromosome|GO:0009508|16326926|IDA  go_process defense response|GO:0006952|15708347|TAS  go_function DNA binding|GO:0003677|15967440|ISS  go_function DNA binding|GO:0003677||ISS  product WHY3 (WHIRLY 3); DNA binding  note WHIRLY 3 (WHY3); FUNCTIONS IN: DNA binding; INVOLVED IN: defense response; LOCATED IN: plastid chromosome, nucleus, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ssDNA-binding transcriptional regulator (InterPro:IPR009044), Plant transcription factor (InterPro:IPR013742); BEST Arabidopsis thaliana protein match is: WHY1 (WHIRLY 1); DNA binding / telomeric DNA binding (TAIR:AT1G14410.1); Has 59 Blast hits to 58 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G02740.2p  transcript_id AT2G02740.2  protein_id AT2G02740.2p  transcript_id AT2G02740.2  
At2g02741	chr2:000771377	0.0	C/771377-771522	AT2G02741.1  miRNA  gene_syn MICRORNA840A, MIR840A  gene MIR840A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: ACACUGAAGGACCUAAACUAAC  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR840A (MICRORNA840A); miRNA  transcript_id AT2G02741.1  
At2g02750	chr2:000771641	0.0	C/771641-773482	AT2G02750.1  CDS  gene_syn T20F6.11, T20F6_11  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: shoot apex, leaf whorl, embryo, flower; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G13600.1); Has 15772 Blast hits to 5078 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 118; Plants - 15123; Viruses - 0; Other Eukaryotes - 421 (source: NCBI BLink).  protein_id AT2G02750.1p  transcript_id AT2G02750.1  protein_id AT2G02750.1p  transcript_id AT2G02750.1  
At2g02760	chr2:000774271	0.0	W/774271-774395,774487-774512,774604-774693,774778-774866,775021-775149	AT2G02760.1  CDS  gene_syn ATUBC2, T20F6.10, T20F6_10, UBC2, UBIQUITING-CONJUGATING ENZYME 2  gene ATUBC2  function ubiquitin conjugating enzyme UBC2. Homolog of the yeast RAD6 gene.  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_process UV protection|GO:0009650|9371881|IGI  go_process vegetative to reproductive phase transition|GO:0010228|18849490|IGI  go_process histone H2B ubiquitination|GO:0033523|18849490|IGI  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|9371881|ISS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2); ubiquitin-protein ligase  note UBIQUITING-CONJUGATING ENZYME 2 (ATUBC2); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: UV protection, histone H2B ubiquitination, vegetative to reproductive phase transition, ubiquitin-dependent protein catabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC1 (UBIQUITIN CARRIER PROTEIN 1); ubiquitin-protein ligase (TAIR:AT1G14400.2); Has 7801 Blast hits to 7769 proteins in 311 species: Archae - 0; Bacteria - 0; Metazoa - 3699; Fungi - 1519; Plants - 1189; Viruses - 22; Other Eukaryotes - 1372 (source: NCBI BLink).  protein_id AT2G02760.1p  transcript_id AT2G02760.1  protein_id AT2G02760.1p  transcript_id AT2G02760.1  
At2g02770	chr2:000779687	0.0	C/779687-779786,779528-779595,779098-779443,778767-778883,778445-778698,777649-777827,777464-777576,777251-777318,777073-777174,776827-776982,776632-776731,776488-776525,776265-776426,776019-776065,775863-775927,775657-775727	AT2G02770.1  CDS  gene_syn T20F6.9, T20F6_9  go_process macromolecule biosynthetic process|GO:0009059||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function holo-[acyl-carrier-protein] synthase activity|GO:0008897||IEA  go_component cellular_component|GO:0005575||ND  product holo-[acyl-carrier-protein] synthase/ magnesium ion binding  note holo-[acyl-carrier-protein] synthase/ magnesium ion binding; FUNCTIONS IN: holo-[acyl-carrier-protein] synthase activity, magnesium ion binding; INVOLVED IN: macromolecule biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: 4 -phosphopantetheinyl transferase (InterPro:IPR008278); BEST Arabidopsis thaliana protein match is: 4 -phosphopantetheinyl transferase family protein (TAIR:AT3G11470.1); Has 1060 Blast hits to 1058 proteins in 425 species: Archae - 0; Bacteria - 842; Metazoa - 45; Fungi - 31; Plants - 61; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).  protein_id AT2G02770.1p  transcript_id AT2G02770.1  protein_id AT2G02770.1p  transcript_id AT2G02770.1  
At2g02780	chr2:000783386	0.0	C/783386-784646,783174-783328,782852-783098,782571-782764,782467-782504,782273-782387,781932-782183	AT2G02780.1  CDS  gene_syn T20F6.8, T20F6_8  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT1G14390.1); Has 57528 Blast hits to 33295 proteins in 1054 species: Archae - 24; Bacteria - 2406; Metazoa - 16318; Fungi - 1053; Plants - 33942; Viruses - 92; Other Eukaryotes - 3693 (source: NCBI BLink).  protein_id AT2G02780.1p  transcript_id AT2G02780.1  protein_id AT2G02780.1p  transcript_id AT2G02780.1  
At2g02790	chr2:000788708	0.0	W/788708-788800,788891-789160,789241-789429,789520-789600,789669-790946	AT2G02790.1  CDS  gene_syn IQ-domain 29, IQD29, T20F6.7, T20F6_7  gene IQD29  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product IQD29 (IQ-domain 29); calmodulin binding  note IQ-domain 29 (IQD29); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQD28 (IQ67 DOMAIN PROTEIN 28); calmodulin binding (TAIR:AT1G14380.2); Has 7393 Blast hits to 5438 proteins in 475 species: Archae - 15; Bacteria - 609; Metazoa - 3092; Fungi - 719; Plants - 642; Viruses - 17; Other Eukaryotes - 2299 (source: NCBI BLink).  protein_id AT2G02790.1p  transcript_id AT2G02790.1  protein_id AT2G02790.1p  transcript_id AT2G02790.1  
At2g02795	chr2:000795896	0.0	W/795896-795938,796029-796492	AT2G02795.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G02795.1p  transcript_id AT2G02795.1  protein_id AT2G02795.1p  transcript_id AT2G02795.1  
At2g02800	chr2:000799184	0.0	C/799184-799250,798383-798720,798148-798283,797899-798035,797672-797795,796889-797367	AT2G02800.1  CDS  gene_syn APK2B, PROTEIN KINASE 2B, T20F6.6, T20F6_6  gene APK2B  function Encodes protein kinase APK2b.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_function kinase activity|GO:0016301||ISS  product APK2B (PROTEIN KINASE 2B); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note PROTEIN KINASE 2B (APK2B); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: APK2A (PROTEIN KINASE 2A); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT1G14370.1); Has 81945 Blast hits to 80823 proteins in 2752 species: Archae - 50; Bacteria - 7385; Metazoa - 36228; Fungi - 6145; Plants - 18564; Viruses - 345; Other Eukaryotes - 13228 (source: NCBI BLink).  protein_id AT2G02800.1p  transcript_id AT2G02800.1  protein_id AT2G02800.1p  transcript_id AT2G02800.1  
At2g02800	chr2:000799184	0.0	C/799184-799250,798383-798720,798148-798283,797899-798035,797672-797795,796889-797367	AT2G02800.2  CDS  gene_syn APK2B, PROTEIN KINASE 2B, T20F6.6, T20F6_6  gene APK2B  function Encodes protein kinase APK2b.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_function kinase activity|GO:0016301||ISS  product APK2B (PROTEIN KINASE 2B); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note PROTEIN KINASE 2B (APK2B); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: APK2A (PROTEIN KINASE 2A); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT1G14370.1); Has 81945 Blast hits to 80823 proteins in 2752 species: Archae - 50; Bacteria - 7385; Metazoa - 36228; Fungi - 6145; Plants - 18564; Viruses - 345; Other Eukaryotes - 13228 (source: NCBI BLink).  protein_id AT2G02800.2p  transcript_id AT2G02800.2  protein_id AT2G02800.2p  transcript_id AT2G02800.2  
At2g02810	chr2:000801643	0.0	W/801643-801746,801937-802034,802132-802262,802360-802390,802494-802597,802673-802794,802881-803289	AT2G02810.1  CDS  gene_syn ATUTR1, T20F6.5, T20F6_5, UDP-GALACTOSE TRANSPORTER 1, UTR1  gene UTR1  function Encodes a multitransmembrane hydrophobic protein that functions as transporter of UDP-galactose and UDP-glucose into the Golgi. Localized in the ER. Involved in the unfolded protein response, a mechanism that controls proper protein folding in the ER.  go_component endoplasmic reticulum membrane|GO:0005789|16467298|IDA  go_process nucleotide-sugar transport|GO:0015780|12042319|IDA  go_process endoplasmic reticulum unfolded protein response|GO:0030968|16467298|IMP  go_function UDP-galactose transmembrane transporter activity|GO:0005459|12042319|IDA  go_function UDP-glucose transmembrane transporter activity|GO:0005460|12042319|IDA  go_function pyrimidine nucleotide sugar transmembrane transporter activity|GO:0015165||ISS  product UTR1 (UDP-GALACTOSE TRANSPORTER 1); UDP-galactose transmembrane transporter/ UDP-glucose transmembrane transporter/ pyrimidine nucleotide sugar transmembrane transporter  note UDP-GALACTOSE TRANSPORTER 1 (UTR1); FUNCTIONS IN: UDP-galactose transmembrane transporter activity, UDP-glucose transmembrane transporter activity, pyrimidine nucleotide sugar transmembrane transporter activity; INVOLVED IN: endoplasmic reticulum unfolded protein response, nucleotide-sugar transport; LOCATED IN: endoplasmic reticulum membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UAA transporter (InterPro:IPR013657); BEST Arabidopsis thaliana protein match is: UTR3 (UDP-GALACTOSE TRANSPORTER 3); pyrimidine nucleotide sugar transmembrane transporter (TAIR:AT1G14360.1); Has 761 Blast hits to 757 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 445; Fungi - 101; Plants - 108; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT2G02810.1p  transcript_id AT2G02810.1  protein_id AT2G02810.1p  transcript_id AT2G02810.1  
At2g02820	chr2:000807032	0.0	C/807032-807139,806891-806937,806726-806782,806561-806633,806429-806484,806145-806330,805851-806029,805617-805762,805340-805482,804890-805262	AT2G02820.1  CDS  gene_syn AtMYB88, MYB88, T20F6.4, T20F6_4, myb domain protein 88  gene MYB88  function Encodes a putative transcription factor (MYB88), involved in stomata development, double loss of MYB88 and FLP (MYB124) activity results in a failure of guard mother cells (GMCs) to adopt the guard cell fate, thus they continue to divide resulting in abnormal stomata consisting of clusters of numerous guard cell-like cells. This phenotype is enhanced in double mutants over the single mutant flp phenotype.  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process guard cell differentiation|GO:0010052|16155180|IGI  go_function DNA binding|GO:0003677|9839469|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9839469|ISS  product MYB88 (myb domain protein 88); DNA binding / transcription factor  note myb domain protein 88 (MYB88); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, guard cell differentiation; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: FLP (FOUR LIPS); DNA binding / transcription factor (TAIR:AT1G14350.2); Has 5784 Blast hits to 5308 proteins in 356 species: Archae - 0; Bacteria - 2; Metazoa - 600; Fungi - 326; Plants - 3099; Viruses - 3; Other Eukaryotes - 1754 (source: NCBI BLink).  protein_id AT2G02820.1p  transcript_id AT2G02820.1  protein_id AT2G02820.1p  transcript_id AT2G02820.1  
At2g02820	chr2:000807032	0.0	C/807032-807139,806891-806937,806726-806782,806561-806633,806429-806484,806145-806330,805851-806029,805617-805762,805340-805482,804914-805262,804716-804826	AT2G02820.2  CDS  gene_syn AtMYB88, MYB88, T20F6.4, T20F6_4, myb domain protein 88  gene MYB88  function Encodes a putative transcription factor (MYB88), involved in stomata development, double loss of MYB88 and FLP (MYB124) activity results in a failure of guard mother cells (GMCs) to adopt the guard cell fate, thus they continue to divide resulting in abnormal stomata consisting of clusters of numerous guard cell-like cells. This phenotype is enhanced in double mutants over the single mutant flp phenotype.  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process guard cell differentiation|GO:0010052|16155180|IGI  go_function DNA binding|GO:0003677|9839469|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9839469|ISS  product MYB88 (myb domain protein 88); DNA binding / transcription factor  note myb domain protein 88 (MYB88); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, guard cell differentiation; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: FLP (FOUR LIPS); DNA binding / transcription factor (TAIR:AT1G14350.2); Has 5789 Blast hits to 5313 proteins in 356 species: Archae - 0; Bacteria - 2; Metazoa - 600; Fungi - 330; Plants - 3100; Viruses - 3; Other Eukaryotes - 1754 (source: NCBI BLink).  protein_id AT2G02820.2p  transcript_id AT2G02820.2  protein_id AT2G02820.2p  transcript_id AT2G02820.2  
At2g02830	chr2:000808372	0.0	W/808372-808872	AT2G02830.1  mRNA_TE_gene  pseudo  gene_syn T20F6.3, T20F6_3  note Transposable element gene, copia-like retrotransposon family, has a 1.3e-37 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea)  
At2g02835	chr2:000821242	0.0	C/821242-821291,820780-821175,820702-820740,820437-820548	AT2G02835.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: nucleic acid binding / zinc ion binding (TAIR:AT2G06904.1); Has 11 Blast hits to 11 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G02835.1p  transcript_id AT2G02835.1  protein_id AT2G02835.1p  transcript_id AT2G02835.1  
At2g02840	chr2:000821633	0.0	W/821633-822100	AT2G02840.1  CDS  gene_syn T17M13.1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: nucleic acid binding / zinc ion binding (TAIR:AT2G06904.1); Has 10 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G02840.1p  transcript_id AT2G02840.1  protein_id AT2G02840.1p  transcript_id AT2G02840.1  
At2g02850	chr2:000827531	0.0	C/827531-827720,826630-826829	AT2G02850.1  CDS  gene_syn ARPN, PLANTACYANIN, T17M13.2, T17M13_2  gene ARPN  function Encodes plantacyanin one of blue copper proteins. Involved in anther development and pollination. Expressed in the transmitting tract of the pistil.  go_component apoplast|GO:0048046|18538804|IDA  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component middle lamella-containing extracellular matrix|GO:0048196|15908590|TAS  go_process pollination|GO:0009856|15908590|IMP  go_process anther development|GO:0048653|15908590|IMP  go_function copper ion binding|GO:0005507||ISS  product ARPN (PLANTACYANIN); copper ion binding / electron carrier  note PLANTACYANIN (ARPN); FUNCTIONS IN: electron carrier activity, copper ion binding; INVOLVED IN: anther development, pollination; LOCATED IN: middle lamella-containing extracellular matrix, apoplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972), Blue (type 1) copper domain (InterPro:IPR000923); BEST Arabidopsis thaliana protein match is: plastocyanin-like domain-containing protein / mavicyanin, putative (TAIR:AT5G26330.1); Has 627 Blast hits to 618 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 627; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G02850.1p  transcript_id AT2G02850.1  protein_id AT2G02850.1p  transcript_id AT2G02850.1  
At2g02860	chr2:000831210	0.0	C/831210-831276,831044-831083,830866-830950,830740-830773,830531-830630,830350-830425,829728-830066,829456-829599,829125-829358,828970-829033,828830-828873,828546-828713	AT2G02860.2  CDS  gene_syn ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, ATSUC3, ATSUT2, SUC3, SUCROSE TRANSPORTER 2, SUCROSE TRANSPORTER 3, SUT2, T17M13.3, T17M13_3  gene SUT2  function encodes a sucrose transporter in sieve elements and a number of sink tissues and cell types. Gene expression is induced by wounding.  go_component plasma membrane|GO:0005886||NAS  go_component membrane|GO:0016020||ISS  go_process response to wounding|GO:0009611|14739351|IEP  go_process sucrose transport|GO:0015770|11135120|TAS  go_process sucrose transport|GO:0015770||NAS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function sucrose:hydrogen symporter activity|GO:0008506||ISS  go_function sucrose transmembrane transporter activity|GO:0008515|10948254|IGI  go_function sucrose transmembrane transporter activity|GO:0008515|11135120|IDA  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product SUT2 (SUCROSE TRANSPORTER 2); carbohydrate transmembrane transporter/ sucrose transmembrane transporter/ sucrose:hydrogen symporter/ sugar:hydrogen symporter  note SUCROSE TRANSPORTER 2 (SUT2); FUNCTIONS IN: sucrose transmembrane transporter activity, carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, sucrose:hydrogen symporter activity; INVOLVED IN: response to wounding, sucrose transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: SUT4 (SUCROSE TRANSPORTER 4); carbohydrate transmembrane transporter/ sucrose transmembrane transporter/ sucrose:hydrogen symporter/ sugar:hydrogen symporter (TAIR:AT1G09960.1); Has 780 Blast hits to 771 proteins in 191 species: Archae - 0; Bacteria - 96; Metazoa - 295; Fungi - 96; Plants - 241; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT2G02860.2p  transcript_id AT2G02860.2  protein_id AT2G02860.2p  transcript_id AT2G02860.2  
At2g02860	chr2:000832030	0.0	C/832030-832296,831456-831521,831210-831308,831044-831108,830866-830950,830740-830773,830531-830630,830350-830425,829728-830066,829456-829599,829125-829358,828970-829033,828830-828873,828546-828713	AT2G02860.1  CDS  gene_syn ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, ATSUC3, ATSUT2, SUC3, SUCROSE TRANSPORTER 2, SUCROSE TRANSPORTER 3, SUT2, T17M13.3, T17M13_3  gene SUT2  function encodes a sucrose transporter in sieve elements and a number of sink tissues and cell types. Gene expression is induced by wounding.  go_component plasma membrane|GO:0005886||NAS  go_component membrane|GO:0016020||ISS  go_process response to wounding|GO:0009611|14739351|IEP  go_process sucrose transport|GO:0015770|11135120|TAS  go_process sucrose transport|GO:0015770||NAS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function sucrose:hydrogen symporter activity|GO:0008506||ISS  go_function sucrose transmembrane transporter activity|GO:0008515|10948254|IGI  go_function sucrose transmembrane transporter activity|GO:0008515|11135120|IDA  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product SUT2 (SUCROSE TRANSPORTER 2); carbohydrate transmembrane transporter/ sucrose transmembrane transporter/ sucrose:hydrogen symporter/ sugar:hydrogen symporter  note SUCROSE TRANSPORTER 2 (SUT2); FUNCTIONS IN: sucrose transmembrane transporter activity, carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, sucrose:hydrogen symporter activity; INVOLVED IN: response to wounding, sucrose transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sucrose/H+ symporter, plant (InterPro:IPR005989), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: SUT4 (SUCROSE TRANSPORTER 4); carbohydrate transmembrane transporter/ sucrose transmembrane transporter/ sucrose:hydrogen symporter/ sugar:hydrogen symporter (TAIR:AT1G09960.1); Has 1512 Blast hits to 1370 proteins in 325 species: Archae - 28; Bacteria - 407; Metazoa - 392; Fungi - 161; Plants - 246; Viruses - 0; Other Eukaryotes - 278 (source: NCBI BLink).  protein_id AT2G02860.1p  transcript_id AT2G02860.1  protein_id AT2G02860.1p  transcript_id AT2G02860.1  
At2g02870	chr2:000838378	0.0	W/838378-839781	AT2G02870.1  CDS  gene_syn T17M13.4, T17M13_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT1G14330.1); Has 5851 Blast hits to 3263 proteins in 195 species: Archae - 4; Bacteria - 227; Metazoa - 4620; Fungi - 8; Plants - 572; Viruses - 136; Other Eukaryotes - 284 (source: NCBI BLink).  protein_id AT2G02870.1p  transcript_id AT2G02870.1  protein_id AT2G02870.1p  transcript_id AT2G02870.1  
At2g02870	chr2:000838378	0.0	W/838378-839781	AT2G02870.2  CDS  gene_syn T17M13.4, T17M13_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT1G14330.1); Has 5851 Blast hits to 3263 proteins in 195 species: Archae - 4; Bacteria - 227; Metazoa - 4620; Fungi - 8; Plants - 572; Viruses - 136; Other Eukaryotes - 284 (source: NCBI BLink).  protein_id AT2G02870.2p  transcript_id AT2G02870.2  protein_id AT2G02870.2p  transcript_id AT2G02870.2  
At2g02870	chr2:000838378	0.0	W/838378-839781	AT2G02870.3  CDS  gene_syn T17M13.4, T17M13_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT1G14330.1); Has 5851 Blast hits to 3263 proteins in 195 species: Archae - 4; Bacteria - 227; Metazoa - 4620; Fungi - 8; Plants - 572; Viruses - 136; Other Eukaryotes - 284 (source: NCBI BLink).  protein_id AT2G02870.3p  transcript_id AT2G02870.3  protein_id AT2G02870.3p  transcript_id AT2G02870.3  
At2g02880	chr2:000841303	0.0	W/841303-841862,842658-842847,842957-843151	AT2G02880.1  CDS  gene_syn T17M13.5, T17M13_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mucin-related  note mucin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62270.1); Has 72 Blast hits to 72 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 6; Plants - 38; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT2G02880.1p  transcript_id AT2G02880.1  protein_id AT2G02880.1p  transcript_id AT2G02880.1  
At2g02890	chr2:000846544	0.0	C/846544-846616,845888-846199,844525-845166,843913-844481	AT2G02890.1  CDS  gene_syn T17M13.6, T17M13_6  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  product F-box family protein  note F-box family protein; FUNCTIONS IN: drug transporter activity, antiporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G02660.1); Has 516 Blast hits to 488 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 516; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G02890.1p  transcript_id AT2G02890.1  protein_id AT2G02890.1p  transcript_id AT2G02890.1  
At2g02900	chr2:000846855	0.0	C/846855-846927	AT2G02900.1  tRNA  gene_syn 35227.TRNA-ALA-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: AGC)  transcript_id AT2G02900.1  
At2g02910	chr2:000849164	0.0	C/849164-849371,849041-849073,848852-848950,848442-848761,848130-848341,847788-848044,847511-847689,847335-847409	AT2G02910.1  CDS  gene_syn T17M13.8, T17M13_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF616 (InterPro:IPR006852); BEST Arabidopsis thaliana protein match is: EMB2756 (EMBRYO DEFECTIVE 2756) (TAIR:AT1G34550.1); Has 191 Blast hits to 191 proteins in 22 species: Archae - 6; Bacteria - 21; Metazoa - 0; Fungi - 0; Plants - 106; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT2G02910.1p  transcript_id AT2G02910.1  protein_id AT2G02910.1p  transcript_id AT2G02910.1  
At2g02930	chr2:000851957	0.0	C/851957-852106,851348-851836	AT2G02930.1  CDS  gene_syn ATGSTF3, GLUTATHIONE S-TRANSFERASE 16, GLUTATHIONE S-TRANSFERASE F3, GST16, T17M13.10, T17M13_10  gene ATGSTF3  function Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTF3 (GLUTATHIONE S-TRANSFERASE F3); glutathione transferase  note GLUTATHIONE S-TRANSFERASE F3 (ATGSTF3); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: toxin catabolic process; LOCATED IN: plasma membrane, cytoplasm; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Thioredoxin-like fold (InterPro:IPR012336), Glutathione S-transferase, N-terminal (InterPro:IPR004045); BEST Arabidopsis thaliana protein match is: ATGSTF2 (GLUTATHIONE S-TRANSFERASE PHI 2); glutathione binding / glutathione transferase (TAIR:AT4G02520.1); Has 10291 Blast hits to 10281 proteins in 954 species: Archae - 0; Bacteria - 5238; Metazoa - 1565; Fungi - 440; Plants - 832; Viruses - 0; Other Eukaryotes - 2216 (source: NCBI BLink).  protein_id AT2G02930.1p  transcript_id AT2G02930.1  protein_id AT2G02930.1p  transcript_id AT2G02930.1  
At2g02950	chr2:000855149	0.0	C/855149-856468	AT2G02950.1  CDS  gene_syn PHYTOCHROME KINASE SUBSTRATE 1, PKS1, T17M13.12, T17M13_12  gene PKS1  function Encodes a basic soluble protein which can independently bind to either PHYA or PHYB, regardless of whether the phytochromes are in the Pr or Pfr state. PKS1 can be phosphorylated by oat phyA in vitro in a light regulated manner. It is postulated to be a negative regulator of phyB signalling.  go_component cytoplasm|GO:0005737|10348744|NAS  go_component plasma membrane|GO:0005886|16777956|IDA  go_process red, far-red light phototransduction|GO:0009585|10348744|IMP  go_process phototropism|GO:0009638|16777956|IGI  go_process positive gravitropism|GO:0009958|18024556|IMP  go_process red or far red light signaling pathway|GO:0010017|16891401|IMP  go_process response to red light|GO:0010114|17076805|IEP  go_process response to far red light|GO:0010218|17076805|IEP  go_function protein binding|GO:0005515|10348744|IPI  go_function protein binding|GO:0005515|14615593|IPI  go_function protein binding|GO:0005515|16777956|IPI  product PKS1 (PHYTOCHROME KINASE SUBSTRATE 1); protein binding  note PHYTOCHROME KINASE SUBSTRATE 1 (PKS1); FUNCTIONS IN: protein binding; INVOLVED IN: in 6 processes; LOCATED IN: plasma membrane, cytoplasm; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: PKS2 (PHYTOCHROME KINASE SUBSTRATE 2) (TAIR:AT1G14280.1); Has 477 Blast hits to 244 proteins in 80 species: Archae - 0; Bacteria - 85; Metazoa - 94; Fungi - 23; Plants - 59; Viruses - 0; Other Eukaryotes - 216 (source: NCBI BLink).  protein_id AT2G02950.1p  transcript_id AT2G02950.1  protein_id AT2G02950.1p  transcript_id AT2G02950.1  
At2g02955	chr2:000859592	0.0	W/859592-860180,860266-861134,861230-861772	AT2G02955.1  CDS  gene_syn MEE12, maternal effect embryo arrest 12  gene MEE12  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  product MEE12 (maternal effect embryo arrest 12)  note maternal effect embryo arrest 12 (MEE12); INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: CHP-rich zinc finger protein-related (TAIR:AT4G01340.1); Has 27 Blast hits to 27 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 4; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G02955.1p  transcript_id AT2G02955.1  protein_id AT2G02955.1p  transcript_id AT2G02955.1  
At2g02960	chr2:000863783	0.0	C/863783-863980,863602-863673,863226-863293,862988-863138,862611-862893,862440-862495	AT2G02960.5  CDS  gene_syn T17M13.13, T17M13_13  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G14260.2); Has 1256 Blast hits to 1256 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 621; Fungi - 87; Plants - 308; Viruses - 29; Other Eukaryotes - 211 (source: NCBI BLink).  protein_id AT2G02960.5p  transcript_id AT2G02960.5  protein_id AT2G02960.5p  transcript_id AT2G02960.5  
At2g02960	chr2:000863783	0.0	C/863783-863980,863602-863673,863226-863293,862988-863138,862807-862893,862611-862700,862346-862495	AT2G02960.1  CDS  gene_syn T17M13.13, T17M13_13  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G14260.2); Has 1261 Blast hits to 1261 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 621; Fungi - 87; Plants - 313; Viruses - 29; Other Eukaryotes - 211 (source: NCBI BLink).  protein_id AT2G02960.1p  transcript_id AT2G02960.1  protein_id AT2G02960.1p  transcript_id AT2G02960.1  
At2g02960	chr2:000863783	0.0	C/863783-863980,863602-863673,863226-863293,862988-863138,862807-862893,862611-862700,862346-862495	AT2G02960.2  CDS  gene_syn T17M13.13, T17M13_13  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G14260.2); Has 1261 Blast hits to 1261 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 621; Fungi - 87; Plants - 313; Viruses - 29; Other Eukaryotes - 211 (source: NCBI BLink).  protein_id AT2G02960.2p  transcript_id AT2G02960.2  protein_id AT2G02960.2p  transcript_id AT2G02960.2  
At2g02960	chr2:000863783	0.0	C/863783-863980,863602-863673,863226-863293,862988-863138,862807-862893,862611-862700,862346-862495	AT2G02960.3  CDS  gene_syn T17M13.13, T17M13_13  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G14260.2); Has 1261 Blast hits to 1261 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 621; Fungi - 87; Plants - 313; Viruses - 29; Other Eukaryotes - 211 (source: NCBI BLink).  protein_id AT2G02960.3p  transcript_id AT2G02960.3  protein_id AT2G02960.3p  transcript_id AT2G02960.3  
At2g02960	chr2:000863783	0.0	C/863783-863980,863602-863673,863226-863293,862988-863138,862807-862893,862611-862700,862346-862495	AT2G02960.4  CDS  gene_syn T17M13.13, T17M13_13  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G14260.2); Has 1261 Blast hits to 1261 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 621; Fungi - 87; Plants - 313; Viruses - 29; Other Eukaryotes - 211 (source: NCBI BLink).  protein_id AT2G02960.4p  transcript_id AT2G02960.4  protein_id AT2G02960.4p  transcript_id AT2G02960.4  
At2g02970	chr2:000867383	0.0	C/867383-868007,867118-867230,866922-867029,866636-866690,866302-866493,866106-866203,865772-865968,865395-865674	AT2G02970.1  CDS  gene_syn T17M13.14, T17M13_14  go_function hydrolase activity|GO:0016787||IEA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product nucleoside phosphatase family protein / GDA1/CD39 family protein  note nucleoside phosphatase family protein / GDA1/CD39 family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407); BEST Arabidopsis thaliana protein match is: nucleoside phosphatase family protein / GDA1/CD39 family protein (TAIR:AT1G14230.1); Has 1085 Blast hits to 1080 proteins in 167 species: Archae - 0; Bacteria - 20; Metazoa - 529; Fungi - 212; Plants - 199; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).  protein_id AT2G02970.1p  transcript_id AT2G02970.1  protein_id AT2G02970.1p  transcript_id AT2G02970.1  
At2g02980	chr2:000868468	0.0	W/868468-870279	AT2G02980.1  CDS  gene_syn T17M13.15, T17M13_15  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G66520.1); Has 14851 Blast hits to 5388 proteins in 182 species: Archae - 3; Bacteria - 4; Metazoa - 130; Fungi - 153; Plants - 14186; Viruses - 0; Other Eukaryotes - 375 (source: NCBI BLink).  protein_id AT2G02980.1p  transcript_id AT2G02980.1  protein_id AT2G02980.1p  transcript_id AT2G02980.1  
At2g02990	chr2:000873714	0.0	W/873714-873827,873904-874059,874165-874363,874444-874667	AT2G02990.1  CDS  gene_syn ATRNS1, RIBONUCLEASE 1, RNS1, T17M13.16, T17M13_16  gene RNS1  function member of the ribonuclease T2 family, responds to inorganic phosphate starvation, and inhibits production of anthocyanin. Also involved in wound-induced signaling independent of jasmonic acid.  go_component cell wall|GO:0005618|14595688|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component extracellular region|GO:0005576|9880376|IDA  go_process aging|GO:0007568|8000425|IEP  go_process response to wounding|GO:0009611|11846873|IEP  go_process anthocyanin biosynthetic process|GO:0009718|9880376|IMP  go_process jasmonic acid mediated signaling pathway|GO:0009867|11846873|IEP  go_process cellular response to phosphate starvation|GO:0016036|8000425|IEP  go_process cellular response to phosphate starvation|GO:0016036|9880376|IEP  go_function endoribonuclease activity|GO:0004521||ISS  go_function ribonuclease activity|GO:0004540|8000425|IDA  product RNS1 (RIBONUCLEASE 1); endoribonuclease/ ribonuclease  note RIBONUCLEASE 1 (RNS1); FUNCTIONS IN: ribonuclease activity, endoribonuclease activity; INVOLVED IN: cellular response to phosphate starvation, aging, response to wounding, anthocyanin biosynthetic process, jasmonic acid mediated signaling pathway; LOCATED IN: extracellular region, cell wall, plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ribonuclease T2 (InterPro:IPR001568), Ribonuclease T2, active site (InterPro:IPR018188); BEST Arabidopsis thaliana protein match is: ribonuclease T2 family protein (TAIR:AT1G14220.1); Has 2034 Blast hits to 2033 proteins in 386 species: Archae - 0; Bacteria - 286; Metazoa - 146; Fungi - 183; Plants - 1329; Viruses - 7; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT2G02990.1p  transcript_id AT2G02990.1  protein_id AT2G02990.1p  transcript_id AT2G02990.1  
At2g03000	chr2:000875233	0.0	W/875233-876472,876840-877207	AT2G03000.1  CDS  gene_syn T17M13.17, T17M13_17  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G14200.1); Has 26327 Blast hits to 13071 proteins in 591 species: Archae - 30; Bacteria - 2310; Metazoa - 9727; Fungi - 4737; Plants - 2646; Viruses - 535; Other Eukaryotes - 6342 (source: NCBI BLink).  protein_id AT2G03000.1p  transcript_id AT2G03000.1  protein_id AT2G03000.1p  transcript_id AT2G03000.1  
At2g03010	chr2:000879247	0.0	W/879247-879319,879427-879558,879738-879908,880122-880287,880524-880718,880979-881143,881267-881471	AT2G03010.1  CDS  gene_syn T17M13.18, T17M13_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF577 (InterPro:IPR007598); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G37410.1); Has 44 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 2; Plants - 36; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G03010.1p  transcript_id AT2G03010.1  protein_id AT2G03010.1p  transcript_id AT2G03010.1  
At2g03020	chr2:000884039	0.0	C/884039-884081,883605-883952,883491-883517,882927-883252	AT2G03020.2  CDS  gene_syn T17M13.19, T17M13_19  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_component cellular_component|GO:0005575||ND  product heat shock protein-related  note heat shock protein-related; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), Small heat shock protein, predicted, plant (InterPro:IPR016952), Peptidase A1 (InterPro:IPR001461), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: heat shock protein-related (TAIR:AT4G16540.1); Has 62 Blast hits to 47 proteins in 15 species: Archae - 0; Bacteria - 18; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G03020.2p  transcript_id AT2G03020.2  protein_id AT2G03020.2p  transcript_id AT2G03020.2  
At2g03020	chr2:000884039	0.0	C/884039-884081,883605-883952,883491-883517,883342-883365,882927-883252	AT2G03020.1  CDS  gene_syn T17M13.19, T17M13_19  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_component cellular_component|GO:0005575||ND  product heat shock protein-related  note heat shock protein-related; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), Small heat shock protein, predicted, plant (InterPro:IPR016952), Peptidase A1 (InterPro:IPR001461), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: heat shock protein-related (TAIR:AT4G16540.1); Has 62 Blast hits to 47 proteins in 15 species: Archae - 0; Bacteria - 18; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G03020.1p  transcript_id AT2G03020.1  protein_id AT2G03020.1p  transcript_id AT2G03020.1  
At2g03030	chr2:000889764	0.0	W/889764-889969,890037-890282,890358-890520	AT2G03030.1  CDS  gene_syn T17M13.20, T17M13_20  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_process defense response|GO:0006952||ISS  product Toll-Interleukin-Resistance (TIR) domain-containing protein  note Toll-Interleukin-Resistance (TIR) domain-containing protein; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Toll-Interleukin-Resistance (TIR) domain-containing protein (TAIR:AT2G03300.1); Has 854 Blast hits to 814 proteins in 42 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 849; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G03030.1p  transcript_id AT2G03030.1  protein_id AT2G03030.1p  transcript_id AT2G03030.1  
At2g03040	chr2:000893363	0.0	C/893363-893572,893083-893292,892823-892903	AT2G03040.1  CDS  gene_syn T17M13.21, T17M13_21  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  product transmembrane protein-related  note transmembrane protein-related; INVOLVED IN: transport; LOCATED IN: integral to membrane; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: protein transmembrane transporter (TAIR:AT2G03290.1); Has 438 Blast hits to 438 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 290; Fungi - 14; Plants - 106; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT2G03040.1p  transcript_id AT2G03040.1  protein_id AT2G03040.1p  transcript_id AT2G03040.1  
At2g03050	chr2:000900094	0.0	C/900094-900945	AT2G03050.1  CDS  gene_syn T17M13.22, T17M13_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial transcription termination factor-related / mTERF-related  note mitochondrial transcription termination factor-related / mTERF-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: mitochondrial transcription termination factor-related / mTERF-related (TAIR:AT2G34620.1); Has 570 Blast hits to 392 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 527; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT2G03050.1p  transcript_id AT2G03050.1  protein_id AT2G03050.1p  transcript_id AT2G03050.1  
At2g03060	chr2:000901614	0.0	W/901614-901798,901899-901958,902051-902069,902163-902227,902332-902347,902433-902494,902579-902675,902749-902823,902901-903013,903101-903569	AT2G03060.2  CDS  gene_syn AGAMOUS-LIKE 30, AGL30, T17M13.23, T17M13_23  gene AGL30  function Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL30 is expressed in pollen.It forms heterodimers with other MICK family members.  go_component nucleus|GO:0005634||IEA  go_process pollen development|GO:0009555|19211705|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product DNA binding / transcription factor  note AGAMOUS-LIKE 30 (AGL30); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: pollen development; LOCATED IN: nucleus; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL65 (AGAMOUS-LIKE 65); DNA binding / transcription factor (TAIR:AT1G18750.1); Has 4401 Blast hits to 4400 proteins in 569 species: Archae - 0; Bacteria - 0; Metazoa - 544; Fungi - 204; Plants - 3593; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT2G03060.2p  transcript_id AT2G03060.2  protein_id AT2G03060.2p  transcript_id AT2G03060.2  
At2g03060	chr2:000901614	0.0	W/901614-901798,902140-902227,902433-902494,902579-902675,902901-903013,903101-903536,903622-903639	AT2G03060.1  CDS  gene_syn AGAMOUS-LIKE 30, AGL30, T17M13.23, T17M13_23  gene AGL30  function Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL30 is expressed in pollen.It forms heterodimers with other MICK family members.  go_component nucleus|GO:0005634||IEA  go_process pollen development|GO:0009555|19211705|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product DNA binding / transcription factor  note AGAMOUS-LIKE 30 (AGL30); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: pollen development; LOCATED IN: nucleus; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL65 (AGAMOUS-LIKE 65); DNA binding / transcription factor (TAIR:AT1G18750.1); Has 4170 Blast hits to 4169 proteins in 550 species: Archae - 0; Bacteria - 0; Metazoa - 544; Fungi - 207; Plants - 3363; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT2G03060.1p  transcript_id AT2G03060.1  protein_id AT2G03060.1p  transcript_id AT2G03060.1  
At2g03070	chr2:000905978	0.0	W/905978-906156,906247-906371,906466-906590,906659-906842,906948-907031,907153-907208,907299-907568,907657-907713,908031-908237,908325-908375,908473-908536,908620-908792	AT2G03070.1  CDS  gene_syn T17M13.24, T17M13_24  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; Has 20753 Blast hits to 10362 proteins in 411 species: Archae - 2; Bacteria - 361; Metazoa - 8063; Fungi - 2482; Plants - 2165; Viruses - 54; Other Eukaryotes - 7626 (source: NCBI BLink).  protein_id AT2G03070.1p  transcript_id AT2G03070.1  protein_id AT2G03070.1p  transcript_id AT2G03070.1  
At2g03080	chr2:000911692	0.0	W/911692-914049	AT2G03080.1  mRNA_TE_gene  pseudo  gene_syn T17M13.25, T17M13_25  note Transposable element gene, copia-like retrotransposon family, has a 1.4e-10 P-value blast match to GB:AAC24836 pol polyprotein (Ty1_Copia-element) (Candida albicans)  
At2g03090	chr2:000918547	0.0	C/918547-918554,918305-918438,917903-918215,917361-917667	AT2G03090.1  CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN A15, ATEXP15, ATEXPA15, ATHEXP ALPHA 1.3, EXP15, EXPANSIN 15, T17M13.26, T17M13_26  gene ATEXPA15  function member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_process syncytium formation|GO:0006949|16942607|IEP  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828||ISS  go_process plant-type cell wall modification during multidimensional cell growth|GO:0009831||ISS  product ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15)  note ARABIDOPSIS THALIANA EXPANSIN A15 (ATEXPA15); INVOLVED IN: syncytium formation, plant-type cell wall modification during multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10); structural constituent of cell wall (TAIR:AT1G26770.2); Has 1483 Blast hits to 1482 proteins in 143 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 37; Plants - 1395; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT2G03090.1p  transcript_id AT2G03090.1  protein_id AT2G03090.1p  transcript_id AT2G03090.1  
At2g03100	chr2:000926809	0.0	C/926809-929704	AT2G03100.1  mRNA_TE_gene  pseudo  gene_syn T18E12.23  note Transposable element gene, copia-like retrotransposon family, has a 3.2e-225 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At2g03110	chr2:000935432	0.0	W/935432-935812,935895-935975	AT2G03110.1  CDS  gene_syn T18E12.22, T18E12_22  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product RNA binding / nucleic acid binding  note RNA binding / nucleic acid binding; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT1G14170.3); Has 696 Blast hits to 594 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 376; Fungi - 35; Plants - 276; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G03110.1p  transcript_id AT2G03110.1  protein_id AT2G03110.1p  transcript_id AT2G03110.1  
At2g03120	chr2:000937554	0.0	W/937554-937593,937902-938017,938112-938263,938347-938432,938692-938819,938959-939009,939126-939212,939312-939381,939496-939632,939732-939809,939994-940083	AT2G03120.1  CDS  gene_syn ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE, ATSPP, T18E12.21, T18E12_21  gene ATSPP  function homologous to Signal Peptide Peptidases (SPP), required for pollen development and pollen germination. No homozygotes could be recovered from a T-DNA insertion mutant.  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum|GO:0005783|19168645|IDA  go_process pollen development|GO:0009555|19168645|IMP  go_process pollen germination|GO:0009846|19168645|IMP  product ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE); aspartic-type endopeptidase  note ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE (ATSPP); FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: pollen germination, pollen development; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22B, signal peptide peptidase (InterPro:IPR007369); BEST Arabidopsis thaliana protein match is: aspartic-type endopeptidase/ peptidase (TAIR:AT1G01650.2); Has 744 Blast hits to 723 proteins in 142 species: Archae - 2; Bacteria - 0; Metazoa - 408; Fungi - 90; Plants - 137; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT2G03120.1p  transcript_id AT2G03120.1  protein_id AT2G03120.1p  transcript_id AT2G03120.1  
At2g03130	chr2:000940744	0.0	W/940744-941076	AT2G03130.1  CDS  gene_syn T18E12.20, T18E12_20  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L12 family protein  note ribosomal protein L12 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719), Ribosomal protein L7/L12, C-terminal (InterPro:IPR013823); BEST Arabidopsis thaliana protein match is: ribosomal protein L12 family protein (TAIR:AT1G70190.1); Has 5533 Blast hits to 5533 proteins in 1530 species: Archae - 0; Bacteria - 3150; Metazoa - 131; Fungi - 80; Plants - 166; Viruses - 0; Other Eukaryotes - 2006 (source: NCBI BLink).  protein_id AT2G03130.1p  transcript_id AT2G03130.1  protein_id AT2G03130.1p  transcript_id AT2G03130.1  
At2g03140	chr2:000942000	0.0	W/942000-942745,942826-943102,943205-943390,943572-943713,944067-944548,944645-947053,947143-947312,947399-947554,948051-948291,948567-948877,949040-949337	AT2G03140.1  CDS  gene_syn T18E12.19, T18E12_19  go_component nucleus|GO:0005634|18433157|IDA  go_process proteolysis|GO:0006508||ISS  product CAAX amino terminal protease family protein  note CAAX amino terminal protease family protein; INVOLVED IN: proteolysis; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675); BEST Arabidopsis thaliana protein match is: late embryogenesis abundant protein, putative / LEA protein, putative (TAIR:AT3G50790.1); Has 23018 Blast hits to 13463 proteins in 1126 species: Archae - 80; Bacteria - 6803; Metazoa - 6863; Fungi - 2179; Plants - 631; Viruses - 123; Other Eukaryotes - 6339 (source: NCBI BLink).  protein_id AT2G03140.1p  transcript_id AT2G03140.1  protein_id AT2G03140.1p  transcript_id AT2G03140.1  
At2g03150	chr2:000952313	0.0	W/952313-952393,952466-952954,953064-953167,953397-954134,954231-954276,954917-955009,955097-955152,955368-955470,955617-955828,955913-955976,956321-957343,957423-957497,957621-957695,957780-958235,958330-958545,958641-958682,958772-958834,958918-959004	AT2G03150.1  CDS  gene_syn T18E12.18, T18E12_18, emb1579, embryo defective 1579  gene emb1579  go_function calcium ion binding|GO:0005509||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function binding|GO:0005488||ISS  product emb1579 (embryo defective 1579); binding / calcium ion binding  note embryo defective 1579 (emb1579); FUNCTIONS IN: binding, calcium ion binding; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992); Has 125920 Blast hits to 56296 proteins in 2267 species: Archae - 286; Bacteria - 11325; Metazoa - 58503; Fungi - 14640; Plants - 5579; Viruses - 940; Other Eukaryotes - 34647 (source: NCBI BLink).  protein_id AT2G03150.1p  transcript_id AT2G03150.1  protein_id AT2G03150.1p  transcript_id AT2G03150.1  
At2g03160	chr2:000959645	0.0	W/959645-960247	AT2G03160.1  CDS  gene_syn ARABIDOPSIS SKP1-LIKE 19, ASK19, T18E12.17, T18E12_17  gene ASK19  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process protein ubiquitination|GO:0016567|12970487|ISS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product ASK19 (ARABIDOPSIS SKP1-LIKE 19); protein binding / ubiquitin-protein ligase  note ARABIDOPSIS SKP1-LIKE 19 (ASK19); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: protein ubiquitination; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, sepal, filament, seed coat, valve; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: ASK15 (ARABIDOPSIS SKP1-LIKE 15); protein binding / ubiquitin-protein ligase (TAIR:AT3G25650.1); Has 1067 Blast hits to 1067 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 454; Fungi - 109; Plants - 361; Viruses - 11; Other Eukaryotes - 132 (source: NCBI BLink).  protein_id AT2G03160.1p  transcript_id AT2G03160.1  protein_id AT2G03160.1p  transcript_id AT2G03160.1  
At2g03170	chr2:000961322	0.0	W/961322-961771	AT2G03170.1  CDS  gene_syn ARABIDOPSIS SKP1-LIKE 14, ASK14, T18E12.16, T18E12_16  gene ASK14  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|14749489|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|14749489|IPI  product ASK14 (ARABIDOPSIS SKP1-LIKE 14); protein binding / ubiquitin-protein ligase  note ARABIDOPSIS SKP1-LIKE 14 (ASK14); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: ASK15 (ARABIDOPSIS SKP1-LIKE 15); protein binding / ubiquitin-protein ligase (TAIR:AT3G25650.1); Has 1067 Blast hits to 1065 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 471; Fungi - 109; Plants - 356; Viruses - 11; Other Eukaryotes - 120 (source: NCBI BLink).  protein_id AT2G03170.1p  transcript_id AT2G03170.1  protein_id AT2G03170.1p  transcript_id AT2G03170.1  
At2g03180	chr2:000962764	0.0	W/962764-963126	AT2G03180.1  CDS  gene_syn T18E12.15, T18E12_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G03180.1p  transcript_id AT2G03180.1  protein_id AT2G03180.1p  transcript_id AT2G03180.1  
At2g03190	chr2:000964232	0.0	W/964232-964744	AT2G03190.1  CDS  gene_syn ARABIDOPSIS SKP1-LIKE 16, ASK16, T18E12.14, T18E12_14  gene ASK16  function one of SKP1 homologs. Gene is expressed specifically in the silique.  go_component SCF ubiquitin ligase complex|GO:0019005|12970487|ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|12970487|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|14749489|IPI  product ASK16 (ARABIDOPSIS SKP1-LIKE 16); protein binding / ubiquitin-protein ligase  note ARABIDOPSIS SKP1-LIKE 16 (ASK16); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: SCF ubiquitin ligase complex; EXPRESSED IN: fruit; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: ASK15 (ARABIDOPSIS SKP1-LIKE 15); protein binding / ubiquitin-protein ligase (TAIR:AT3G25650.1); Has 1060 Blast hits to 1058 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 462; Fungi - 108; Plants - 353; Viruses - 11; Other Eukaryotes - 126 (source: NCBI BLink).  protein_id AT2G03190.1p  transcript_id AT2G03190.1  protein_id AT2G03190.1p  transcript_id AT2G03190.1  
At2g03200	chr2:000966506	0.0	C/966506-967891	AT2G03200.1  CDS  gene_syn T18E12.13, T18E12_13  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: CDR1 (CONSTITUTIVE DISEASE RESISTANCE 1); aspartic-type endopeptidase (TAIR:AT5G33340.1); Has 1708 Blast hits to 1685 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 176; Fungi - 322; Plants - 1102; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT2G03200.1p  transcript_id AT2G03200.1  protein_id AT2G03200.1p  transcript_id AT2G03200.1  
At2g03210	chr2:000969832	0.0	C/969832-970018,968335-969767	AT2G03210.1  CDS  gene_syn ATFUT2, FUCOSYLTRANSFERASE 2, FUT2, T18E12.12, T18E12_12  gene FUT2  function member of Glycosyltransferase Family- 37  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process cell wall biogenesis|GO:0042546||IEA  go_function fucosyltransferase activity|GO:0008417|11743104|ISS  go_function fucosyltransferase activity|GO:0008417||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product FUT2 (FUCOSYLTRANSFERASE 2); fucosyltransferase/ transferase, transferring glycosyl groups  note FUCOSYLTRANSFERASE 2 (FUT2); FUNCTIONS IN: transferase activity, transferring glycosyl groups, fucosyltransferase activity; INVOLVED IN: cell wall biogenesis; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Xyloglucan fucosyltransferase (InterPro:IPR004938); BEST Arabidopsis thaliana protein match is: FT1 (FUCOSYLTRANSFERASE 1); fucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT2G03220.1); Has 198 Blast hits to 193 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 198; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G03210.1p  transcript_id AT2G03210.1  protein_id AT2G03210.1p  transcript_id AT2G03210.1  
At2g03220	chr2:000972077	0.0	C/972077-972353,970401-971800	AT2G03220.1  CDS  gene_syn A-(1,2)-FUCOSYLTRANSFERASE, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, ATFT1, ATFUT1, FT1, FUCOSYLTRANSFERASE 1, MUR2, MURUS 2, T18E12.11, T18E12_11, XYLOGLUCAN FUCOSYLTRANSFERASE  gene FT1  function member of Glycosyltransferase Family- 37  go_component membrane|GO:0016020||IEA  go_process plant-type cell wall biogenesis|GO:0009832|10373113|TAS  go_process xyloglucan biosynthetic process|GO:0009969|10373113|IDA  go_function fucosyltransferase activity|GO:0008417|10373113|TAS  go_function fucosyltransferase activity|GO:0008417|11743104|ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product FT1 (FUCOSYLTRANSFERASE 1); fucosyltransferase/ transferase, transferring glycosyl groups  note FUCOSYLTRANSFERASE 1 (FT1); FUNCTIONS IN: transferase activity, transferring glycosyl groups, fucosyltransferase activity; INVOLVED IN: plant-type cell wall biogenesis, xyloglucan biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan fucosyltransferase (InterPro:IPR004938); BEST Arabidopsis thaliana protein match is: FUT7; fucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT1G14070.1); Has 199 Blast hits to 194 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 198; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G03220.1p  transcript_id AT2G03220.1  protein_id AT2G03220.1p  transcript_id AT2G03220.1  
At2g03230	chr2:000972917	0.0	W/972917-973375	AT2G03230.1  CDS  gene_syn T18E12.10, T18E12_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: GCK (InterPro:IPR012891); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57640.1); Has 54 Blast hits to 54 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G03230.1p  transcript_id AT2G03230.1  protein_id AT2G03230.1p  transcript_id AT2G03230.1  
At2g03240	chr2:000976683	0.0	C/976683-977337,975953-976316,975819-975867,975523-975724,975331-975451,974982-975240,974795-974899,974494-974688,974118-974402,973903-974039,973693-973792	AT2G03240.1  CDS  gene_syn T18E12.9, T18E12_9  go_component integral to membrane|GO:0016021||IEA  go_component integral to membrane|GO:0016021||ISS  product unknown protein  note LOCATED IN: integral to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: SPX, N-terminal (InterPro:IPR004331), EXS, C-terminal (InterPro:IPR004342); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14040.1); Has 764 Blast hits to 738 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 262; Fungi - 250; Plants - 154; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT2G03240.1p  transcript_id AT2G03240.1  protein_id AT2G03240.1p  transcript_id AT2G03240.1  
At2g03250	chr2:000986188	0.0	C/986188-986662,985142-985490,984998-985046,984842-984913,984460-984589,984249-984369,983533-983791,983330-983434,983054-983248,982680-982970,982368-982504,982173-982260	AT2G03250.1  CDS  gene_syn T18E12.8, T18E12_8  go_component integral to membrane|GO:0016021||IEA  go_component integral to membrane|GO:0016021||ISS  product EXS family protein / ERD1/XPR1/SYG1 family protein  note EXS family protein / ERD1/XPR1/SYG1 family protein; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: EXS, C-terminal (InterPro:IPR004342), SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G03240.1); Has 686 Blast hits to 663 proteins in 142 species: Archae - 0; Bacteria - 2; Metazoa - 240; Fungi - 222; Plants - 131; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).  protein_id AT2G03250.1p  transcript_id AT2G03250.1  protein_id AT2G03250.1p  transcript_id AT2G03250.1  
At2g03260	chr2:000992059	0.0	C/992059-992332,991596-991937,990269-990660,990108-990179,989899-990028,989700-989820,989349-989607,989156-989260,988889-989083,988514-988810,988294-988430,988106-988205	AT2G03260.1  CDS  gene_syn T18E12.7, T18E12_7  go_component integral to membrane|GO:0016021||IEA  go_component integral to membrane|GO:0016021||ISS  product EXS family protein / ERD1/XPR1/SYG1 family protein  note EXS family protein / ERD1/XPR1/SYG1 family protein; LOCATED IN: integral to membrane; EXPRESSED IN: shoot apex, root; CONTAINS InterPro DOMAIN/s: SPX, N-terminal (InterPro:IPR004331), EXS, C-terminal (InterPro:IPR004342); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14040.1); Has 706 Blast hits to 683 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 235; Fungi - 253; Plants - 125; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT2G03260.1p  transcript_id AT2G03260.1  protein_id AT2G03260.1p  transcript_id AT2G03260.1  
At2g03270	chr2:000994071	0.0	W/994071-995990	AT2G03270.1  CDS  gene_syn T4M8.30, T4M8_30  go_function nucleotide binding|GO:0000166||IEA  go_function DNA binding|GO:0003677||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component cellular_component|GO:0005575||ND  go_function DNA binding|GO:0003677||ISS  product DNA-binding protein, putative  note DNA-binding protein, putative; FUNCTIONS IN: nucleoside-triphosphatase activity, DNA binding, nucleotide binding, ATP binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA helicase, putative (InterPro:IPR004483), DEAD-like helicase, N-terminal (InterPro:IPR014001); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT5G35970.1); Has 4398 Blast hits to 3880 proteins in 634 species: Archae - 141; Bacteria - 1267; Metazoa - 1124; Fungi - 651; Plants - 305; Viruses - 8; Other Eukaryotes - 902 (source: NCBI BLink).  protein_id AT2G03270.1p  transcript_id AT2G03270.1  protein_id AT2G03270.1p  transcript_id AT2G03270.1  
At2g03280	chr2:000997990	0.0	C/997990-998239,997833-997900,997431-997763,997049-997338,996769-996973,996537-996694,996249-996471	AT2G03280.2  CDS  gene_syn T4M8.29, T4M8_29  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14020.1); Has 430 Blast hits to 424 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 430; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G03280.2p  transcript_id AT2G03280.2  protein_id AT2G03280.2p  transcript_id AT2G03280.2  
At2g03280	chr2:000997990	0.0	C/997990-998239,997833-997900,997675-997763,997431-997593,997049-997338,996769-996973,996537-996694,996249-996471	AT2G03280.1  CDS  gene_syn T4M8.29, T4M8_29  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14020.1); Has 431 Blast hits to 425 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 431; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G03280.1p  transcript_id AT2G03280.1  protein_id AT2G03280.1p  transcript_id AT2G03280.1  
At2g03290	chr2:000999422	0.0	W/999422-999631,999709-999918,1000098-1000174,1000290-1000434	AT2G03290.1  CDS  gene_syn T4M8.28, T4M8_28  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_process intracellular protein transport|GO:0006886||ISS  go_function protein transmembrane transporter activity|GO:0008320||ISS  product protein transmembrane transporter  note protein transmembrane transporter; FUNCTIONS IN: protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: endomembrane system, integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: transmembrane protein-related (TAIR:AT2G03040.1); Has 1160 Blast hits to 1158 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 601; Fungi - 304; Plants - 141; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).  protein_id AT2G03290.1p  transcript_id AT2G03290.1  protein_id AT2G03290.1p  transcript_id AT2G03290.1  
At2g03291	chr2:001000729	0.0	C/1000729-1001741	AT2G03291.1  pseudogenic_transcript  pseudo  function Pseudogene of AT2G22340; unknown protein  
At2g03300	chr2:001004017	0.0	C/1004017-1004222,1003704-1003949,1003468-1003627	AT2G03300.1  CDS  gene_syn T4M8.27, T4M8_27  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_process defense response|GO:0006952||ISS  product Toll-Interleukin-Resistance (TIR) domain-containing protein  note Toll-Interleukin-Resistance (TIR) domain-containing protein; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Toll-Interleukin-Resistance (TIR) domain-containing protein (TAIR:AT2G03030.1); Has 854 Blast hits to 814 proteins in 41 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 851; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G03300.1p  transcript_id AT2G03300.1  protein_id AT2G03300.1p  transcript_id AT2G03300.1  
At2g03310	chr2:001006646	0.0	C/1006646-1007089,1006476-1006562	AT2G03310.1  CDS  gene_syn T4M8.26, T4M8_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 9 growth stages; Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G03310.1p  transcript_id AT2G03310.1  protein_id AT2G03310.1p  transcript_id AT2G03310.1  
At2g03320	chr2:001007382	0.0	W/1007382-1007445,1007704-1007945	AT2G03320.1  CDS  gene_syn T4M8.25, T4M8_25  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G03320.1p  transcript_id AT2G03320.1  protein_id AT2G03320.1p  transcript_id AT2G03320.1  
At2g03330	chr2:001008460	0.0	W/1008460-1008827,1013233-1013432,1013533-1014122	AT2G03330.1  CDS  gene_syn T4M8.24, T4M8_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11810.1); Has 212 Blast hits to 212 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 210; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G03330.1p  transcript_id AT2G03330.1  protein_id AT2G03330.1p  transcript_id AT2G03330.1  
At2g03340	chr2:001016481	0.0	C/1016481-1016936,1015309-1015994,1015044-1015205,1014724-1014961	AT2G03340.1  CDS  gene_syn T4M8.23, T4M8_23, WRKY DNA-BINDING PROTEIN 3, WRKY3  gene WRKY3  function Encodes WRKY DNA-binding protein 3 (WRKY3).  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY3; transcription factor  note WRKY3; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY4; DNA binding / transcription factor (TAIR:AT1G13960.1); Has 4073 Blast hits to 2467 proteins in 200 species: Archae - 2; Bacteria - 13; Metazoa - 332; Fungi - 85; Plants - 3279; Viruses - 3; Other Eukaryotes - 359 (source: NCBI BLink).  protein_id AT2G03340.1p  transcript_id AT2G03340.1  protein_id AT2G03340.1p  transcript_id AT2G03340.1  
At2g03350	chr2:001020970	0.0	C/1020970-1021071,1020215-1020269,1019733-1020115	AT2G03350.1  CDS  gene_syn T4M8.22, T4M8_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G08890.2); Has 292 Blast hits to 292 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 291; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G03350.1p  transcript_id AT2G03350.1  protein_id AT2G03350.1p  transcript_id AT2G03350.1  
At2g03360	chr2:001024153	0.0	C/1024153-1024273,1022287-1023521	AT2G03360.1  CDS  gene_syn T4M8.21, T4M8_21  go_component endomembrane system|GO:0012505||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||IEA  go_process biological_process|GO:0008150||ND  product transferase, transferring glycosyl groups  note transferase, transferring glycosyl groups; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycosyltransferase AER61, uncharacterized (InterPro:IPR007657); BEST Arabidopsis thaliana protein match is: transferase, transferring glycosyl groups (TAIR:AT2G03370.1); Has 477 Blast hits to 476 proteins in 72 species: Archae - 0; Bacteria - 51; Metazoa - 94; Fungi - 4; Plants - 243; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT2G03360.1p  transcript_id AT2G03360.1  protein_id AT2G03360.1p  transcript_id AT2G03360.1  
At2g03360	chr2:001024153	0.0	C/1024153-1024273,1022287-1023533	AT2G03360.2  CDS  gene_syn T4M8.21, T4M8_21  go_component endomembrane system|GO:0012505||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||IEA  go_process biological_process|GO:0008150||ND  product transferase, transferring glycosyl groups  note transferase, transferring glycosyl groups; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycosyltransferase AER61, uncharacterized (InterPro:IPR007657); BEST Arabidopsis thaliana protein match is: transferase, transferring glycosyl groups (TAIR:AT2G03370.1); Has 477 Blast hits to 476 proteins in 72 species: Archae - 0; Bacteria - 51; Metazoa - 94; Fungi - 4; Plants - 243; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT2G03360.2p  transcript_id AT2G03360.2  protein_id AT2G03360.2p  transcript_id AT2G03360.2  
At2g03370	chr2:001026846	0.0	C/1026846-1026969,1024714-1025948	AT2G03370.1  CDS  gene_syn T4M8.20, T4M8_20  go_component endomembrane system|GO:0012505||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||IEA  go_process biological_process|GO:0008150||ND  product transferase, transferring glycosyl groups  note transferase, transferring glycosyl groups; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycosyltransferase AER61, uncharacterized (InterPro:IPR007657); BEST Arabidopsis thaliana protein match is: transferase, transferring glycosyl groups (TAIR:AT2G03360.1); Has 464 Blast hits to 463 proteins in 72 species: Archae - 0; Bacteria - 45; Metazoa - 111; Fungi - 6; Plants - 244; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT2G03370.1p  transcript_id AT2G03370.1  protein_id AT2G03370.1p  transcript_id AT2G03370.1  
At2g03380	chr2:001028292	0.0	W/1028292-1030361	AT2G03380.1  CDS  gene_syn T4M8.19, T4M8_19  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: CRR22 (CHLORORESPIRATORY REDUCTION22); endonuclease (TAIR:AT1G11290.1); Has 15984 Blast hits to 4990 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 105; Plants - 15339; Viruses - 0; Other Eukaryotes - 379 (source: NCBI BLink).  protein_id AT2G03380.1p  transcript_id AT2G03380.1  protein_id AT2G03380.1p  transcript_id AT2G03380.1  
At2g03390	chr2:001032031	0.0	C/1032031-1032354,1031865-1031924,1031620-1031714,1031354-1031526,1031152-1031264,1030997-1031042,1030850-1030890,1030635-1030775	AT2G03390.1  CDS  gene_syn T4M8.18, T4M8_18  go_component chloroplast|GO:0009507|18431481|IDA  go_process nucleotide-excision repair|GO:0006289||IEA  go_function DNA binding|GO:0003677||IEA  go_function nuclease activity|GO:0004518||IEA  go_process nucleotide-excision repair|GO:0006289||ISS  go_function DNA binding|GO:0003677||ISS  go_function nuclease activity|GO:0004518||ISS  product uvrB/uvrC motif-containing protein  note uvrB/uvrC motif-containing protein; FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: nucleotide-excision repair; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Hemimethylated DNA-binding region (InterPro:IPR011722), UvrB/UvrC protein (InterPro:IPR001943); Has 1297 Blast hits to 1297 proteins in 161 species: Archae - 0; Bacteria - 218; Metazoa - 81; Fungi - 25; Plants - 23; Viruses - 0; Other Eukaryotes - 950 (source: NCBI BLink).  protein_id AT2G03390.1p  transcript_id AT2G03390.1  protein_id AT2G03390.1p  transcript_id AT2G03390.1  
At2g03410	chr2:001033907	0.0	W/1033907-1034953	AT2G03410.1  CDS  gene_syn T4M8.16, T4M8_16  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product Mo25 family protein  note Mo25 family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, sepal, flower, pollen tube, stamen; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Mo25-like (InterPro:IPR013878), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT5G47540.1); Has 381 Blast hits to 381 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 175; Fungi - 88; Plants - 79; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT2G03410.1p  transcript_id AT2G03410.1  protein_id AT2G03410.1p  transcript_id AT2G03410.1  
At2g03420	chr2:001035751	0.0	C/1035751-1035937,1035566-1035655,1035389-1035485,1035100-1035238	AT2G03420.1  CDS  gene_syn T4M8.15, T4M8_15  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G03420.1p  transcript_id AT2G03420.1  protein_id AT2G03420.1p  transcript_id AT2G03420.1  
At2g03430	chr2:001037354	0.0	C/1037354-1037536,1036987-1037119,1036617-1036741,1036395-1036541,1036192-1036326	AT2G03430.1  CDS  gene_syn T4M8.14, T4M8_14  go_component cell wall|GO:0005618|16287169|IDA  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT4G19150.1); Has 104929 Blast hits to 30234 proteins in 997 species: Archae - 84; Bacteria - 8435; Metazoa - 52441; Fungi - 8607; Plants - 4055; Viruses - 2006; Other Eukaryotes - 29301 (source: NCBI BLink).  protein_id AT2G03430.1p  transcript_id AT2G03430.1  protein_id AT2G03430.1p  transcript_id AT2G03430.1  
At2g03440	chr2:001039409	0.0	C/1039409-1039972	AT2G03440.1  CDS  gene_syn T4M8.13, T4M8_13  function Induced at the transcriptional level by Pseudomonas syringae pv. tomato infection.  go_component cellular_component|GO:0005575||ND  go_process response to bacterium|GO:0009617|17899171|IEP  go_function molecular_function|GO:0003674||ND  product nodulin-related  note nodulin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to bacterium; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell, cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13930.1); Has 76 Blast hits to 75 proteins in 33 species: Archae - 0; Bacteria - 8; Metazoa - 11; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT2G03440.1p  transcript_id AT2G03440.1  protein_id AT2G03440.1p  transcript_id AT2G03440.1  
At2g03445	chr2:001040938	0.0	W/1040938-1041042	AT2G03445.1  miRNA  gene_syn MICRORNA398A, MIR398A  gene MIR398A  function Encodes a microRNA that targets both CSD and CytC oxidase family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGUGUUCUCAGGUCACCCCUU. Down-regulated by biotic and abiotic stress.  go_process response to salt stress|GO:0009651|19148671|IEP  go_process response to ozone|GO:0010193|19148671|IEP  go_process defense response to bacterium|GO:0042742|19148671|IEP  product MIR398A (MICRORNA398A); miRNA  transcript_id AT2G03445.1  
At2g03450	chr2:001041528	0.0	W/1041528-1042217,1042304-1043569	AT2G03450.1  CDS  gene_syn ATPAP9, PAP9, PURPLE ACID PHOSPHATASE 9, T4M8.12, T4M8_12  gene PAP9  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function acid phosphatase activity|GO:0003993|12021284|ISS  go_function acid phosphatase activity|GO:0003993|16244908|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PAP9 (PURPLE ACID PHOSPHATASE 9); acid phosphatase/ protein serine/threonine phosphatase  note PURPLE ACID PHOSPHATASE 9 (PAP9); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Purple acid phosphatase, N-terminal (InterPro:IPR015914), Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: calcineurin-like phosphoesterase family protein (TAIR:AT1G13900.1); Has 1035 Blast hits to 1027 proteins in 232 species: Archae - 2; Bacteria - 258; Metazoa - 181; Fungi - 58; Plants - 400; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).  protein_id AT2G03450.1p  transcript_id AT2G03450.1  protein_id AT2G03450.1p  transcript_id AT2G03450.1  
At2g03460	chr2:001044570	0.0	C/1044570-1044594,1043729-1044477	AT2G03460.1  CDS  gene_syn T4M8.11, T4M8_11  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT5G51250.1); Has 403 Blast hits to 395 proteins in 41 species: Archae - 0; Bacteria - 2; Metazoa - 87; Fungi - 0; Plants - 313; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G03460.1p  transcript_id AT2G03460.1  protein_id AT2G03460.1p  transcript_id AT2G03460.1  
At2g03470	chr2:001046983	0.0	C/1046983-1047130,1045694-1046895	AT2G03470.2  CDS  gene_syn T4M8.10, T4M8_10  go_function DNA binding|GO:0003677||IEA  go_component nucleus|GO:0005634||ISS  go_function DNA binding|GO:0003677||ISS  product myb family transcription factor / ELM2 domain-containing protein  note myb family transcription factor / ELM2 domain-containing protein; FUNCTIONS IN: DNA binding; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), ELM2 (InterPro:IPR000949), Myb, DNA-binding (InterPro:IPR014778); BEST Arabidopsis thaliana protein match is: ELM2 domain-containing protein (TAIR:AT1G13880.1); Has 3818 Blast hits to 2670 proteins in 217 species: Archae - 5; Bacteria - 210; Metazoa - 1092; Fungi - 393; Plants - 192; Viruses - 112; Other Eukaryotes - 1814 (source: NCBI BLink).  protein_id AT2G03470.2p  transcript_id AT2G03470.2  protein_id AT2G03470.2p  transcript_id AT2G03470.2  
At2g03470	chr2:001046983	0.0	C/1046983-1047130,1045694-1046898	AT2G03470.1  CDS  gene_syn T4M8.10, T4M8_10  go_function DNA binding|GO:0003677||IEA  go_component nucleus|GO:0005634||ISS  go_function DNA binding|GO:0003677||ISS  product myb family transcription factor / ELM2 domain-containing protein  note myb family transcription factor / ELM2 domain-containing protein; FUNCTIONS IN: DNA binding; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), ELM2 (InterPro:IPR000949), Myb, DNA-binding (InterPro:IPR014778); BEST Arabidopsis thaliana protein match is: ELM2 domain-containing protein (TAIR:AT1G13880.1); Has 3793 Blast hits to 2659 proteins in 214 species: Archae - 5; Bacteria - 202; Metazoa - 1087; Fungi - 393; Plants - 192; Viruses - 107; Other Eukaryotes - 1807 (source: NCBI BLink).  protein_id AT2G03470.1p  transcript_id AT2G03470.1  protein_id AT2G03470.1p  transcript_id AT2G03470.1  
At2g03480	chr2:001051509	0.0	W/1051509-1052020,1052114-1052249,1052328-1052568,1052689-1052914,1053008-1053093,1053271-1053574,1053716-1053848,1053941-1054090	AT2G03480.2  CDS  gene_syn T4M8.9, T4M8_9  go_component mitochondrion|GO:0005739||IEA  product dehydration-responsive protein-related  note dehydration-responsive protein-related; LOCATED IN: mitochondrion; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive protein-related (TAIR:AT1G13860.4); Has 613 Blast hits to 599 proteins in 92 species: Archae - 2; Bacteria - 116; Metazoa - 0; Fungi - 2; Plants - 460; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT2G03480.2p  transcript_id AT2G03480.2  protein_id AT2G03480.2p  transcript_id AT2G03480.2  
At2g03480	chr2:001051509	0.0	W/1051509-1052020,1052114-1052249,1052328-1052568,1052689-1052914,1053008-1053169,1053314-1053574,1053716-1053848,1053941-1054090	AT2G03480.1  CDS  gene_syn T4M8.9, T4M8_9  go_component mitochondrion|GO:0005739||IEA  product dehydration-responsive protein-related  note dehydration-responsive protein-related; LOCATED IN: mitochondrion; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive protein-related (TAIR:AT1G13860.4); Has 620 Blast hits to 599 proteins in 92 species: Archae - 2; Bacteria - 116; Metazoa - 0; Fungi - 2; Plants - 467; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT2G03480.1p  transcript_id AT2G03480.1  protein_id AT2G03480.1p  transcript_id AT2G03480.1  
At2g03490	chr2:001054718	0.0	C/1054718-1054790	AT2G03490.1  tRNA  gene_syn 48856.TRNA-ALA-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: TGC)  transcript_id AT2G03490.1  
At2g03500	chr2:001059926	0.0	W/1059926-1060124,1060479-1061051,1061640-1061716,1061810-1062259	AT2G03500.1  CDS  gene_syn T4M8.7, T4M8_7  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT1G68670.1); Has 21040 Blast hits to 6747 proteins in 159 species: Archae - 14; Bacteria - 15; Metazoa - 595; Fungi - 917; Plants - 894; Viruses - 8; Other Eukaryotes - 18597 (source: NCBI BLink).  protein_id AT2G03500.1p  transcript_id AT2G03500.1  protein_id AT2G03500.1p  transcript_id AT2G03500.1  
At2g03505	chr2:001064317	0.0	W/1064317-1064368,1064449-1064691,1064773-1064809,1064920-1065094	AT2G03505.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycosyl hydrolase family protein 17  note glycosyl hydrolase family protein 17; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: beta-1,3-glucanase-related (TAIR:AT1G13830.1); Has 681 Blast hits to 645 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 51; Plants - 628; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G03505.1p  transcript_id AT2G03505.1  protein_id AT2G03505.1p  transcript_id AT2G03505.1  
At2g03510	chr2:001066717	0.0	W/1066717-1066833,1067171-1067267,1067345-1067412,1067488-1067547,1067639-1067797,1068028-1068174,1068303-1068517,1068632-1068740,1068836-1068934	AT2G03510.1  CDS  gene_syn T4M8.5, T4M8_5  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product band 7 family protein  note band 7 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, nucleolus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); Has 968 Blast hits to 966 proteins in 360 species: Archae - 2; Bacteria - 617; Metazoa - 138; Fungi - 0; Plants - 19; Viruses - 7; Other Eukaryotes - 185 (source: NCBI BLink).  protein_id AT2G03510.1p  transcript_id AT2G03510.1  protein_id AT2G03510.1p  transcript_id AT2G03510.1  
At2g03520	chr2:001069494	0.0	W/1069494-1069730,1069811-1069949,1070028-1070184,1070277-1070323,1070461-1070558,1070658-1071032,1071117-1071269	AT2G03520.1  CDS  gene_syn ATUPS4, Arabidopsis thaliana ureide permease 4, T4M8.4, T4M8_4  gene ATUPS4  function Encodes AtUPS4, a member of the Arabidopsis ureide permease family.  go_component chloroplast|GO:0009507|15028209|IDA  product ATUPS4 (Arabidopsis thaliana ureide permease 4)  note Arabidopsis thaliana ureide permease 4 (ATUPS4); LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; CONTAINS InterPro DOMAIN/s: Fatty acid elongase 3-ketoacyl-CoA synthase 1 (InterPro:IPR009834); BEST Arabidopsis thaliana protein match is: ATUPS1 (ARABIDOPSIS THALIANA UREIDE PERMEASE 1); allantoin uptake transmembrane transporter (TAIR:AT2G03590.1); Has 144 Blast hits to 135 proteins in 28 species: Archae - 0; Bacteria - 50; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT2G03520.1p  transcript_id AT2G03520.1  protein_id AT2G03520.1p  transcript_id AT2G03520.1  
At2g03530	chr2:001071951	0.0	W/1071951-1072187,1072265-1072403,1072474-1072639,1072719-1072845,1072910-1073284,1073370-1073522	AT2G03530.1  CDS  gene_syn ARABIDOPSIS THALIANA UREIDE PERMEASE 2, ATUPS2, T4M8.3, T4M8_3, UPS2, UREIDE PERMEASE 2  gene UPS2  function Mediate high-affinity uracil and 5-FU (a toxic uracil analogue) transport when expressed in yeast and Xenopus oocytes.Involved in allantoin transport.  go_component plasma membrane|GO:0005886|17317660|IDA  product UPS2 (UREIDE PERMEASE 2)  note UREIDE PERMEASE 2 (UPS2); LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid elongase 3-ketoacyl-CoA synthase 1 (InterPro:IPR009834); BEST Arabidopsis thaliana protein match is: ATUPS1 (ARABIDOPSIS THALIANA UREIDE PERMEASE 1); allantoin uptake transmembrane transporter (TAIR:AT2G03590.1); Has 144 Blast hits to 135 proteins in 28 species: Archae - 0; Bacteria - 44; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT2G03530.1p  transcript_id AT2G03530.1  protein_id AT2G03530.1p  transcript_id AT2G03530.1  
At2g03530	chr2:001071951	0.0	W/1071951-1072187,1072265-1072403,1072474-1072639,1072719-1072845,1072910-1073284,1073370-1073522	AT2G03530.2  CDS  gene_syn ARABIDOPSIS THALIANA UREIDE PERMEASE 2, ATUPS2, T4M8.3, T4M8_3, UPS2, UREIDE PERMEASE 2  gene UPS2  function Mediate high-affinity uracil and 5-FU (a toxic uracil analogue) transport when expressed in yeast and Xenopus oocytes.Involved in allantoin transport.  go_component plasma membrane|GO:0005886|17317660|IDA  product UPS2 (UREIDE PERMEASE 2)  note UREIDE PERMEASE 2 (UPS2); LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid elongase 3-ketoacyl-CoA synthase 1 (InterPro:IPR009834); BEST Arabidopsis thaliana protein match is: ATUPS1 (ARABIDOPSIS THALIANA UREIDE PERMEASE 1); allantoin uptake transmembrane transporter (TAIR:AT2G03590.1); Has 144 Blast hits to 135 proteins in 28 species: Archae - 0; Bacteria - 44; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT2G03530.2p  transcript_id AT2G03530.2  protein_id AT2G03530.2p  transcript_id AT2G03530.2  
At2g03540	chr2:001073759	0.0	W/1073759-1074515	AT2G03540.1  mRNA_TE_gene  pseudo  gene_syn T4M8.2, T4M8_2  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G11710.1); similar to hypothetical protein 23.t00046 [Brassica oleracea] (GB:ABD65629.1); contains domain REVERSE TRANSCRIPTASES (PTHR19446); contains domain gb def: Hypothetical protein At2g15600 (PTHR19446:SF12)  
At2g03550	chr2:001077080	0.0	W/1077080-1078018	AT2G03550.1  CDS  gene_syn T4M8.1, T4M8_1  go_process metabolic process|GO:0008152||IEA  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  product hydrolase  note hydrolase; FUNCTIONS IN: hydrolase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: CXE12; carboxylesterase (TAIR:AT3G48690.1); Has 6078 Blast hits to 6063 proteins in 866 species: Archae - 53; Bacteria - 2866; Metazoa - 1000; Fungi - 571; Plants - 647; Viruses - 5; Other Eukaryotes - 936 (source: NCBI BLink).  protein_id AT2G03550.1p  transcript_id AT2G03550.1  protein_id AT2G03550.1p  transcript_id AT2G03550.1  
At2g03560	chr2:001079639	0.0	W/1079639-1080752,1080887-1080909,1081024-1081176,1081305-1081376	AT2G03560.1  CDS  gene_syn F19B11.1, F19B11_1  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product ubiquitin-protein ligase  note ubiquitin-protein ligase; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G38270.1); Has 346 Blast hits to 249 proteins in 8 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 344; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G03560.1p  transcript_id AT2G03560.1  protein_id AT2G03560.1p  transcript_id AT2G03560.1  
At2g03565	chr2:001081592	0.0	W/1081592-1081671,1081883-1082003	AT2G03565.1  CDS  product unknown protein  note unknown protein.  protein_id AT2G03565.1p  transcript_id AT2G03565.1  protein_id AT2G03565.1p  transcript_id AT2G03565.1  
At2g03570	chr2:001085939	0.0	C/1085939-1085988,1085560-1085779	AT2G03570.1  CDS  gene_syn F19B11.2, F19B11_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G03570.1p  transcript_id AT2G03570.1  protein_id AT2G03570.1p  transcript_id AT2G03570.1  
At2g03580	chr2:001093264	0.0	W/1093264-1093315,1093552-1093733,1094176-1094287,1094393-1094481	AT2G03580.1  CDS  gene_syn F19B11.3, F19B11_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G38270.1); Has 43 Blast hits to 43 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G03580.1p  transcript_id AT2G03580.1  protein_id AT2G03580.1p  transcript_id AT2G03580.1  
At2g03590	chr2:001095129	0.0	W/1095129-1095356,1095436-1095574,1095663-1095816,1095889-1096012,1096103-1096477,1096559-1096711	AT2G03590.1  CDS  gene_syn ARABIDOPSIS THALIANA UREIDE PERMEASE 1, ATUPS1, F19B11.4, F19B11_4  gene ATUPS1  function Encodes a member of a class of allantoin transporters.  go_component endomembrane system|GO:0012505||IEA  go_process allantoin transport|GO:0015720|11971139|IDA  go_function allantoin uptake transmembrane transporter activity|GO:0005274|11971139|IDA  product ATUPS1 (ARABIDOPSIS THALIANA UREIDE PERMEASE 1); allantoin uptake transmembrane transporter  note ARABIDOPSIS THALIANA UREIDE PERMEASE 1 (ATUPS1); FUNCTIONS IN: allantoin uptake transmembrane transporter activity; INVOLVED IN: allantoin transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Fatty acid elongase 3-ketoacyl-CoA synthase 1 (InterPro:IPR009834); BEST Arabidopsis thaliana protein match is: UPS2 (UREIDE PERMEASE 2) (TAIR:AT2G03530.2); Has 150 Blast hits to 150 proteins in 35 species: Archae - 0; Bacteria - 55; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT2G03590.1p  transcript_id AT2G03590.1  protein_id AT2G03590.1p  transcript_id AT2G03590.1  
At2g03600	chr2:001097294	0.0	W/1097294-1097521,1097591-1097729,1097806-1097959,1098041-1098152,1098230-1098367	AT2G03600.1  CDS  gene_syn ATUPS3, Arabidopsis thaliana ureide permease 3, F19B11.5, F19B11_5  gene ATUPS3  function hypothetical protein, similar to ATUPS1, an allantoin transporter.  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product ATUPS3 (Arabidopsis thaliana ureide permease 3)  note Arabidopsis thaliana ureide permease 3 (ATUPS3); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Fatty acid elongase 3-ketoacyl-CoA synthase 1 (InterPro:IPR009834); BEST Arabidopsis thaliana protein match is: ATUPS1 (ARABIDOPSIS THALIANA UREIDE PERMEASE 1); allantoin uptake transmembrane transporter (TAIR:AT2G03590.1); Has 123 Blast hits to 123 proteins in 25 species: Archae - 0; Bacteria - 40; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT2G03600.1p  transcript_id AT2G03600.1  protein_id AT2G03600.1p  transcript_id AT2G03600.1  
At2g03600	chr2:001097294	0.0	W/1097294-1097729,1097806-1097959,1098041-1098152,1098230-1098367	AT2G03600.2  CDS  gene_syn ATUPS3, Arabidopsis thaliana ureide permease 3, F19B11.5, F19B11_5  gene ATUPS3  function hypothetical protein, similar to ATUPS1, an allantoin transporter.  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product ATUPS3 (Arabidopsis thaliana ureide permease 3)  note Arabidopsis thaliana ureide permease 3 (ATUPS3); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Fatty acid elongase 3-ketoacyl-CoA synthase 1 (InterPro:IPR009834); BEST Arabidopsis thaliana protein match is: ATUPS1 (ARABIDOPSIS THALIANA UREIDE PERMEASE 1); allantoin uptake transmembrane transporter (TAIR:AT2G03590.1); Has 114 Blast hits to 114 proteins in 23 species: Archae - 0; Bacteria - 32; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT2G03600.2p  transcript_id AT2G03600.2  protein_id AT2G03600.2p  transcript_id AT2G03600.2  
At2g03600	chr2:001097609	0.0	W/1097609-1097729,1097806-1097959,1098041-1098152,1098230-1098367	AT2G03600.3  CDS  gene_syn ATUPS3, Arabidopsis thaliana ureide permease 3, F19B11.5, F19B11_5  gene ATUPS3  function hypothetical protein, similar to ATUPS1, an allantoin transporter.  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product ATUPS3 (Arabidopsis thaliana ureide permease 3)  note Arabidopsis thaliana ureide permease 3 (ATUPS3); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Fatty acid elongase 3-ketoacyl-CoA synthase 1 (InterPro:IPR009834); BEST Arabidopsis thaliana protein match is: ATUPS1 (ARABIDOPSIS THALIANA UREIDE PERMEASE 1); allantoin uptake transmembrane transporter (TAIR:AT2G03590.1); Has 80 Blast hits to 80 proteins in 13 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G03600.3p  transcript_id AT2G03600.3  protein_id AT2G03600.3p  transcript_id AT2G03600.3  
At2g03610	chr2:001099070	0.0	W/1099070-1099246,1099606-1099842,1099966-1100202	AT2G03610.1  CDS  gene_syn F19B11.6, F19B11_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G04840.1); Has 99 Blast hits to 81 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G03610.1p  transcript_id AT2G03610.1  protein_id AT2G03610.1p  transcript_id AT2G03610.1  
At2g03620	chr2:001101727	0.0	C/1101727-1102168,1101569-1101639,1101344-1101472,1100925-1101269,1100799-1100846,1100489-1100719	AT2G03620.1  CDS  gene_syn F19B11.7, F19B11_7  go_component membrane|GO:0016020||IEA  go_process metal ion transport|GO:0030001||IEA  go_function metal ion transmembrane transporter activity|GO:0046873||IEA  go_component membrane|GO:0016020||ISS  go_process metal ion transport|GO:0030001||ISS  go_function metal ion transmembrane transporter activity|GO:0046873||ISS  product magnesium transporter CorA-like family protein (MRS2-5)  note magnesium transporter CorA-like family protein (MRS2-5); FUNCTIONS IN: metal ion transmembrane transporter activity; INVOLVED IN: metal ion transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Mg2+ transporter protein, CorA-like (InterPro:IPR002523); BEST Arabidopsis thaliana protein match is: magnesium transporter CorA-like family protein (MRS2-1) (TAIR:AT1G16010.2); Has 474 Blast hits to 455 proteins in 110 species: Archae - 0; Bacteria - 4; Metazoa - 60; Fungi - 144; Plants - 205; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT2G03620.1p  transcript_id AT2G03620.1  protein_id AT2G03620.1p  transcript_id AT2G03620.1  
At2g03620	chr2:001101727	0.0	C/1101727-1102168,1101569-1101639,1101344-1101472,1100925-1101269,1100799-1100846,1100489-1100719	AT2G03620.2  CDS  gene_syn F19B11.7, F19B11_7  go_component membrane|GO:0016020||IEA  go_process metal ion transport|GO:0030001||IEA  go_function metal ion transmembrane transporter activity|GO:0046873||IEA  go_component membrane|GO:0016020||ISS  go_process metal ion transport|GO:0030001||ISS  go_function metal ion transmembrane transporter activity|GO:0046873||ISS  product magnesium transporter CorA-like family protein (MRS2-5)  note magnesium transporter CorA-like family protein (MRS2-5); FUNCTIONS IN: metal ion transmembrane transporter activity; INVOLVED IN: metal ion transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Mg2+ transporter protein, CorA-like (InterPro:IPR002523); BEST Arabidopsis thaliana protein match is: magnesium transporter CorA-like family protein (MRS2-1) (TAIR:AT1G16010.2); Has 474 Blast hits to 455 proteins in 110 species: Archae - 0; Bacteria - 4; Metazoa - 60; Fungi - 144; Plants - 205; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT2G03620.2p  transcript_id AT2G03620.2  protein_id AT2G03620.2p  transcript_id AT2G03620.2  
At2g03630	chr2:001103205	0.0	W/1103205-1103795,1103858-1103863	AT2G03630.2  CDS  gene_syn F19B11.8, F19B11_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74220.1).  protein_id AT2G03630.2p  transcript_id AT2G03630.2  protein_id AT2G03630.2p  transcript_id AT2G03630.2  
At2g03630	chr2:001103205	0.0	W/1103205-1103963	AT2G03630.1  CDS  gene_syn F19B11.8, F19B11_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74220.1); Has 76 Blast hits to 76 proteins in 22 species: Archae - 0; Bacteria - 4; Metazoa - 6; Fungi - 5; Plants - 40; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT2G03630.1p  transcript_id AT2G03630.1  protein_id AT2G03630.1p  transcript_id AT2G03630.1  
At2g03640	chr2:001106239	0.0	C/1106239-1106418,1105866-1106151,1105578-1105774,1105352-1105502,1105135-1105256,1104969-1105034,1104824-1104884,1104525-1104730	AT2G03640.1  CDS  gene_syn F19B11.9, F19B11_9  go_component intracellular|GO:0005622||IEA  go_process transport|GO:0006810||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process nucleocytoplasmic transport|GO:0006913||ISS  go_function RNA binding|GO:0003723||ISS  product nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein  note nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: transport, nucleocytoplasmic transport; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT1G13730.1); Has 2452 Blast hits to 2419 proteins in 245 species: Archae - 0; Bacteria - 96; Metazoa - 1494; Fungi - 334; Plants - 309; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).  protein_id AT2G03640.1p  transcript_id AT2G03640.1  protein_id AT2G03640.1p  transcript_id AT2G03640.1  
At2g03640	chr2:001106239	0.0	C/1106239-1106418,1105866-1106151,1105578-1105777,1105352-1105502,1105135-1105256,1104969-1105034,1104824-1104884,1104525-1104730	AT2G03640.2  CDS  gene_syn F19B11.9, F19B11_9  go_component intracellular|GO:0005622||IEA  go_process transport|GO:0006810||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process nucleocytoplasmic transport|GO:0006913||ISS  go_function RNA binding|GO:0003723||ISS  product nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein  note nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: transport, nucleocytoplasmic transport; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT1G13730.1); Has 2445 Blast hits to 2409 proteins in 239 species: Archae - 0; Bacteria - 81; Metazoa - 1485; Fungi - 337; Plants - 309; Viruses - 2; Other Eukaryotes - 231 (source: NCBI BLink).  protein_id AT2G03640.2p  transcript_id AT2G03640.2  protein_id AT2G03640.2p  transcript_id AT2G03640.2  
At2g03650	chr2:001109237	0.0	C/1109237-1110411	AT2G03650.1  mRNA_TE_gene  pseudo  gene_syn F19B11.10  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 2.7e-16 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At2g03660	chr2:001113984	0.0	C/1113984-1114055	AT2G03660.1  tRNA  gene_syn 51057.TRNA-THR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Thr (anticodon: CGT)  transcript_id AT2G03660.1  
At2g03667	chr2:001114179	0.0	W/1114179-1114271,1114531-1114798,1114883-1115022,1115099-1115228,1115310-1115558,1115632-1115705,1115779-1115875,1115955-1116060,1116142-1116235,1116319-1116518,1116602-1116701,1116790-1116906,1117002-1117058,1117174-1117281	AT2G03667.1  CDS  go_process asparagine biosynthetic process|GO:0006529||IEA  go_function asparagine synthase (glutamine-hydrolyzing) activity|GO:0004066||IEA  go_component cellular_component|GO:0005575||ND  product asparagine synthase (glutamine-hydrolyzing)  note asparagine synthase (glutamine-hydrolyzing); FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity; INVOLVED IN: asparagine biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Asparagine synthase (InterPro:IPR001962), Glutamine amidotransferase, type II (InterPro:IPR017932); Has 804 Blast hits to 751 proteins in 286 species: Archae - 66; Bacteria - 218; Metazoa - 123; Fungi - 87; Plants - 17; Viruses - 3; Other Eukaryotes - 290 (source: NCBI BLink).  protein_id AT2G03667.1p  transcript_id AT2G03667.1  protein_id AT2G03667.1p  transcript_id AT2G03667.1  
At2g03670	chr2:001117595	0.0	W/1117595-1117756,1117835-1117879,1117977-1118032,1118131-1118280,1118367-1118471,1118563-1118662,1118741-1119007,1119094-1119263,1119369-1119497,1119576-1119666,1119747-1119824,1119903-1120361	AT2G03670.1  CDS  gene_syn CDC48B, F19B11.12, F19B11_12, T4D2.160  gene CDC48B  function CDC48 - like protein AAA-type ATPaseCell. division control protein 48 homolog B  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATPase activity|GO:0016887||ISS  product CDC48B; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding  note CDC48B; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: cell division cycle protein 48, putative / CDC48, putative (TAIR:AT3G53230.1); Has 39617 Blast hits to 20656 proteins in 1767 species: Archae - 1242; Bacteria - 11248; Metazoa - 7279; Fungi - 4206; Plants - 3081; Viruses - 46; Other Eukaryotes - 12515 (source: NCBI BLink).  protein_id AT2G03670.1p  transcript_id AT2G03670.1  protein_id AT2G03670.1p  transcript_id AT2G03670.1  
At2g03680	chr2:001121398	0.0	W/1121398-1121679,1121773-1121850	AT2G03680.1  CDS  gene_syn F19B11.13, F19B11_13, SKU6, SPIRAL1, SPR1  gene SPR1  function The SPR1 gene encodes a plant-specific 12-kD protein which has a repeated motif at both ends, separated by a predicted rod-like domain, suggesting that it may act as an intermolecular linker. Ubiquitously expressed and belongs to a six-member gene family in Arabidopsis; expressed in transgenic seedlings localized to microtubules within the cortical array, preprophase band, phragmoplast, and mitotic spindle.  go_component spindle microtubule|GO:0005876|15155883|IDA  go_component phragmoplast|GO:0009524|15155883|IDA  go_component preprophase band|GO:0009574|15155883|IDA  go_component cortical microtubule, transverse to long axis|GO:0010005|15155883|IDA  go_process unidimensional cell growth|GO:0009826|11003843|IMP  go_process anisotropic cell growth|GO:0051211|15155883|IMP  go_function molecular_function|GO:0003674||ND  product SPR1 (SPIRAL1)  note SPIRAL1 (SPR1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anisotropic cell growth, unidimensional cell growth; LOCATED IN: spindle microtubule, cortical microtubule, transverse to long axis, preprophase band, phragmoplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: SP1L1 (SPIRAL1-LIKE1) (TAIR:AT1G26355.1); Has 140 Blast hits to 127 proteins in 26 species: Archae - 0; Bacteria - 8; Metazoa - 3; Fungi - 6; Plants - 103; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT2G03680.1p  transcript_id AT2G03680.1  protein_id AT2G03680.1p  transcript_id AT2G03680.1  
At2g03680	chr2:001121398	0.0	W/1121398-1121679,1121773-1121850	AT2G03680.2  CDS  gene_syn F19B11.13, F19B11_13, SKU6, SPIRAL1, SPR1  gene SPR1  function The SPR1 gene encodes a plant-specific 12-kD protein which has a repeated motif at both ends, separated by a predicted rod-like domain, suggesting that it may act as an intermolecular linker. Ubiquitously expressed and belongs to a six-member gene family in Arabidopsis; expressed in transgenic seedlings localized to microtubules within the cortical array, preprophase band, phragmoplast, and mitotic spindle.  go_component spindle microtubule|GO:0005876|15155883|IDA  go_component phragmoplast|GO:0009524|15155883|IDA  go_component preprophase band|GO:0009574|15155883|IDA  go_component cortical microtubule, transverse to long axis|GO:0010005|15155883|IDA  go_process unidimensional cell growth|GO:0009826|11003843|IMP  go_process anisotropic cell growth|GO:0051211|15155883|IMP  go_function molecular_function|GO:0003674||ND  product SPR1 (SPIRAL1)  note SPIRAL1 (SPR1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anisotropic cell growth, unidimensional cell growth; LOCATED IN: spindle microtubule, cortical microtubule, transverse to long axis, preprophase band, phragmoplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: SP1L1 (SPIRAL1-LIKE1) (TAIR:AT1G26355.1).  protein_id AT2G03680.2p  transcript_id AT2G03680.2  protein_id AT2G03680.2p  transcript_id AT2G03680.2  
At2g03690	chr2:001122826	0.0	C/1122826-1123011,1122122-1122616	AT2G03690.1  CDS  gene_syn F19B11.14, F19B11_14  function Ubiquinone biosynthesis protein COQ4 homolog.  go_process ubiquinone biosynthetic process|GO:0006744||IEA  go_function molecular_function|GO:0003674||ND  product coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein  note coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquinone biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Coenzyme Q biosynthesis Coq4 (InterPro:IPR007715); Has 457 Blast hits to 457 proteins in 177 species: Archae - 0; Bacteria - 126; Metazoa - 112; Fungi - 82; Plants - 29; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT2G03690.1p  transcript_id AT2G03690.1  protein_id AT2G03690.1p  transcript_id AT2G03690.1  
At2g03700	chr2:001123390	0.0	C/1123390-1123461	AT2G03700.1  tRNA  gene_syn 51057.TRNA-THR-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Thr (anticodon: CGT)  transcript_id AT2G03700.1  
At2g03710	chr2:001129622	0.0	W/1129622-1129806,1130575-1130656,1130725-1130786,1130858-1130957,1131038-1131079,1131150-1131191,1131268-1131440,1131538-1131628	AT2G03710.1  CDS  gene_syn AGAMOUS-LIKE 3, AGL3, F19B11.16, F19B11_16, MADS BOX PROTEIN, SEP4, SEPALLATA 4  gene SEP4  function This gene belongs to the family of SEP genes. It is involved in the development of sepals, petals, stamens and carpels. Additionally, it plays a central role in the determination of flower meristem and organ identity.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|7632923|ISS  go_process maintenance of floral meristem identity|GO:0010076|15530395|IMP  go_process carpel development|GO:0048440|15530395|IMP  go_process petal development|GO:0048441|15530395|IMP  go_process sepal development|GO:0048442|15530395|IMP  go_process stamen development|GO:0048443|15530395|IMP  go_function DNA binding|GO:0003677|7632923|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product SEP4 (SEPALLATA 4); DNA binding / transcription factor  note SEPALLATA 4 (SEP4); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: SEP1 (SEPALLATA1); DNA binding / transcription factor (TAIR:AT5G15800.1); Has 5382 Blast hits to 5379 proteins in 697 species: Archae - 0; Bacteria - 4; Metazoa - 565; Fungi - 211; Plants - 4528; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT2G03710.1p  transcript_id AT2G03710.1  protein_id AT2G03710.1p  transcript_id AT2G03710.1  
At2g03710	chr2:001129622	0.0	W/1129622-1129806,1130575-1130656,1130725-1130786,1130858-1130957,1131038-1131079,1131150-1131191,1131268-1131440,1131541-1131628	AT2G03710.2  CDS  gene_syn AGAMOUS-LIKE 3, AGL3, F19B11.16, F19B11_16, MADS BOX PROTEIN, SEP4, SEPALLATA 4  gene SEP4  function This gene belongs to the family of SEP genes. It is involved in the development of sepals, petals, stamens and carpels. Additionally, it plays a central role in the determination of flower meristem and organ identity.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|7632923|ISS  go_process maintenance of floral meristem identity|GO:0010076|15530395|IMP  go_process carpel development|GO:0048440|15530395|IMP  go_process petal development|GO:0048441|15530395|IMP  go_process sepal development|GO:0048442|15530395|IMP  go_process stamen development|GO:0048443|15530395|IMP  go_function DNA binding|GO:0003677|7632923|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product SEP4 (SEPALLATA 4); DNA binding / transcription factor  note SEPALLATA 4 (SEP4); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: SEP1 (SEPALLATA1); DNA binding / transcription factor (TAIR:AT5G15800.1); Has 5374 Blast hits to 5371 proteins in 700 species: Archae - 0; Bacteria - 4; Metazoa - 566; Fungi - 207; Plants - 4531; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT2G03710.2p  transcript_id AT2G03710.2  protein_id AT2G03710.2p  transcript_id AT2G03710.2  
At2g03710	chr2:001129622	0.0	W/1129622-1129806,1130575-1130656,1130725-1130786,1130858-1130957,1131038-1131079,1131150-1131242	AT2G03710.3  CDS  gene_syn AGAMOUS-LIKE 3, AGL3, F19B11.16, F19B11_16, MADS BOX PROTEIN, SEP4, SEPALLATA 4  gene SEP4  function This gene belongs to the family of SEP genes. It is involved in the development of sepals, petals, stamens and carpels. Additionally, it plays a central role in the determination of flower meristem and organ identity.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|7632923|ISS  go_process maintenance of floral meristem identity|GO:0010076|15530395|IMP  go_process carpel development|GO:0048440|15530395|IMP  go_process petal development|GO:0048441|15530395|IMP  go_process sepal development|GO:0048442|15530395|IMP  go_process stamen development|GO:0048443|15530395|IMP  go_function DNA binding|GO:0003677|7632923|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product SEP4 (SEPALLATA 4); DNA binding / transcription factor  note SEPALLATA 4 (SEP4); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: SEP1 (SEPALLATA1); DNA binding / transcription factor (TAIR:AT5G15800.2); Has 5335 Blast hits to 5332 proteins in 692 species: Archae - 0; Bacteria - 0; Metazoa - 554; Fungi - 207; Plants - 4520; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT2G03710.3p  transcript_id AT2G03710.3  protein_id AT2G03710.3p  transcript_id AT2G03710.3  
At2g03720	chr2:001132364	0.0	W/1132364-1132484,1132776-1132864,1132938-1133225	AT2G03720.1  CDS  gene_syn F19B11.17, F19B11_17, MRH6, morphogenesis of root hair 6  gene MRH6  function Involved in root hair development  go_component cellular_component|GO:0005575||ND  go_process root hair cell differentiation|GO:0048765|16367956|IMP  product MRH6 (morphogenesis of root hair 6)  note morphogenesis of root hair 6 (MRH6); INVOLVED IN: root hair cell differentiation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729); BEST Arabidopsis thaliana protein match is: universal stress protein (USP) family protein (TAIR:AT1G69080.1); Has 128 Blast hits to 128 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 126; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G03720.1p  transcript_id AT2G03720.1  protein_id AT2G03720.1p  transcript_id AT2G03720.1  
At2g03730	chr2:001139806	0.0	C/1139806-1139809,1139535-1139607,1139408-1139453,1139149-1139331,1138443-1139069,1138246-1138350,1137820-1138152	AT2G03730.1  CDS  gene_syn ACR5, ACT DOMAIN REPEAT 5, F19B11.18, F19B11_18  gene ACR5  function Member of a small family of ACT domain containing proteins. ACT domains are thought to be involved in amino acid binding.  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function amino acid binding|GO:0016597|12481063|ISS  product ACR5; amino acid binding  note ACR5; FUNCTIONS IN: amino acid binding; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: ACR4 (ACT REPEAT 4); amino acid binding (TAIR:AT1G69040.2); Has 1895 Blast hits to 1066 proteins in 270 species: Archae - 0; Bacteria - 1052; Metazoa - 0; Fungi - 0; Plants - 303; Viruses - 0; Other Eukaryotes - 540 (source: NCBI BLink).  protein_id AT2G03730.1p  transcript_id AT2G03730.1  protein_id AT2G03730.1p  transcript_id AT2G03730.1  
At2g03730	chr2:001139806	0.0	C/1139806-1139809,1139535-1139607,1139408-1139453,1139149-1139331,1138443-1139069,1138246-1138350,1137820-1138152	AT2G03730.2  CDS  gene_syn ACR5, ACT DOMAIN REPEAT 5, F19B11.18, F19B11_18  gene ACR5  function Member of a small family of ACT domain containing proteins. ACT domains are thought to be involved in amino acid binding.  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function amino acid binding|GO:0016597|12481063|ISS  product ACR5; amino acid binding  note ACR5; FUNCTIONS IN: amino acid binding; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: ACR4 (ACT REPEAT 4); amino acid binding (TAIR:AT1G69040.2); Has 1895 Blast hits to 1066 proteins in 270 species: Archae - 0; Bacteria - 1052; Metazoa - 0; Fungi - 0; Plants - 303; Viruses - 0; Other Eukaryotes - 540 (source: NCBI BLink).  protein_id AT2G03730.2p  transcript_id AT2G03730.2  protein_id AT2G03730.2p  transcript_id AT2G03730.2  
At2g03740	chr2:001143712	0.0	C/1143712-1143917,1142941-1143304	AT2G03740.1  CDS  gene_syn F19B11.19, F19B11_19  go_process embryonic development ending in seed dormancy|GO:0009793||ISS  go_function molecular_function|GO:0003674||ND  product late embryogenesis abundant domain-containing protein / LEA domain-containing protein  note late embryogenesis abundant domain-containing protein / LEA domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein (InterPro:IPR004238); BEST Arabidopsis thaliana protein match is: late embryogenesis abundant domain-containing protein / LEA domain-containing protein (TAIR:AT2G03850.1); Has 750 Blast hits to 378 proteins in 112 species: Archae - 2; Bacteria - 180; Metazoa - 50; Fungi - 21; Plants - 454; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT2G03740.1p  transcript_id AT2G03740.1  protein_id AT2G03740.1p  transcript_id AT2G03740.1  
At2g03750	chr2:001147968	0.0	C/1147968-1149023	AT2G03750.1  CDS  gene_syn F19B11.20, F19B11_20  go_component endomembrane system|GO:0012505||IEA  go_function sulfotransferase activity|GO:0008146||IEA  go_process biological_process|GO:0008150||ND  go_function sulfotransferase activity|GO:0008146||ISS  product sulfotransferase family protein  note sulfotransferase family protein; FUNCTIONS IN: sulfotransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sulfotransferase (InterPro:IPR000863); BEST Arabidopsis thaliana protein match is: sulfotransferase family protein (TAIR:AT5G43690.1); Has 2112 Blast hits to 2077 proteins in 136 species: Archae - 0; Bacteria - 111; Metazoa - 1433; Fungi - 1; Plants - 311; Viruses - 0; Other Eukaryotes - 256 (source: NCBI BLink).  protein_id AT2G03750.1p  transcript_id AT2G03750.1  protein_id AT2G03750.1p  transcript_id AT2G03750.1  
At2g03760	chr2:001149475	0.0	C/1149475-1150455	AT2G03760.1  CDS  gene_syn ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, ATST1, RAR047, ST, ST1, SULFOTRANSFERASE, SULFOTRANSFERASE 1, SULFURTRANSFERASE  gene ST  function Encodes a brassinosteroid sulfotransferase. In vitro experiements show that this enzyme has a preference for 24-epibrassinosteroids, particularly 24-epicathasterone, but does not act on castasterone and brassinolide. It is differentially expressed during development, being more abundant in young seedlings and actively growing cell cultures. Expression is induced in response to salicylic acid and methyl jasmonate and bacterial pathogens.  go_component cellular_component|GO:0005575||ND  go_process defense response|GO:0006952|8639757|IEP  go_process brassinosteroid metabolic process|GO:0016131|17039368|IDA  go_function sulfotransferase activity|GO:0008146|8639757|ISS  go_function sulfotransferase activity|GO:0008146||ISS  go_function brassinosteroid sulfotransferase activity|GO:0080118|17039368|IDA  product ST; brassinosteroid sulfotransferase/ sulfotransferase  note ST; FUNCTIONS IN: sulfotransferase activity, brassinosteroid sulfotransferase activity; INVOLVED IN: brassinosteroid metabolic process, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Sulfotransferase (InterPro:IPR000863); BEST Arabidopsis thaliana protein match is: sulfotransferase family protein (TAIR:AT2G03770.1); Has 2351 Blast hits to 2319 proteins in 151 species: Archae - 0; Bacteria - 166; Metazoa - 1448; Fungi - 1; Plants - 309; Viruses - 0; Other Eukaryotes - 427 (source: NCBI BLink).  protein_id AT2G03760.1p  transcript_id AT2G03760.1  protein_id AT2G03760.1p  transcript_id AT2G03760.1  
At2g03770	chr2:001150871	0.0	C/1150871-1151845	AT2G03770.1  CDS  gene_syn F19B11.22, F19B11_22  go_function sulfotransferase activity|GO:0008146||IEA  go_function sulfotransferase activity|GO:0008146||ISS  product sulfotransferase family protein  note sulfotransferase family protein; FUNCTIONS IN: sulfotransferase activity; CONTAINS InterPro DOMAIN/s: Sulfotransferase (InterPro:IPR000863); BEST Arabidopsis thaliana protein match is: ST; brassinosteroid sulfotransferase/ sulfotransferase (TAIR:AT2G03760.1); Has 2310 Blast hits to 2274 proteins in 146 species: Archae - 0; Bacteria - 168; Metazoa - 1448; Fungi - 1; Plants - 311; Viruses - 0; Other Eukaryotes - 382 (source: NCBI BLink).  protein_id AT2G03770.1p  transcript_id AT2G03770.1  protein_id AT2G03770.1p  transcript_id AT2G03770.1  
At2g03780	chr2:001154201	0.0	C/1154201-1154285,1154005-1154111,1153702-1153781,1153443-1153584,1153205-1153354,1152897-1153098,1152716-1152813	AT2G03780.1  CDS  gene_syn F19B11.23, F19B11_23  go_function sequence-specific DNA binding|GO:0043565||IEA  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product translin family protein  note translin family protein; FUNCTIONS IN: sequence-specific DNA binding, DNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translin, C-terminal (InterPro:IPR016069), Translin (InterPro:IPR002848), Translin, N-terminal (InterPro:IPR016068); Has 433 Blast hits to 433 proteins in 138 species: Archae - 70; Bacteria - 0; Metazoa - 189; Fungi - 103; Plants - 16; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT2G03780.1p  transcript_id AT2G03780.1  protein_id AT2G03780.1p  transcript_id AT2G03780.1  
At2g03790	chr2:001154385	0.0	W/1154385-1154457	AT2G03790.1  tRNA  gene_syn 51057.TRNA-VAL-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Val (anticodon: TAC)  transcript_id AT2G03790.1  
At2g03800	chr2:001156782	0.0	W/1156782-1156886,1156964-1157144,1157276-1157418,1157519-1157582,1157742-1157794,1158030-1158085,1158177-1158251,1158335-1158523,1158608-1158695	AT2G03800.1  CDS  gene_syn F19B11.25, F19B11_25, GEK1, GEKO1  gene GEK1  function encodes a D-aminoacyl-tRNA deacylase. Involved in detoxification of D-aminoacyl-tRNA. Mutants also show ethanol-hypersensitive phenotype.  go_process response to toxin|GO:0009636|17251192|IGI  go_function D-aminoacyl-tRNA deacylase activity|GO:0051499|17251192|IDA  product GEK1 (GEKO1); D-aminoacyl-tRNA deacylase  note GEKO1 (GEK1); FUNCTIONS IN: D-aminoacyl-tRNA deacylase activity; INVOLVED IN: response to toxin; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterized conserved protein UCP016210 (InterPro:IPR018033), D-aminoacyl-tRNA deacylase (InterPro:IPR007508); Has 267 Blast hits to 267 proteins in 83 species: Archae - 156; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT2G03800.1p  transcript_id AT2G03800.1  protein_id AT2G03800.1p  transcript_id AT2G03800.1  
At2g03810	chr2:001162703	0.0	W/1162703-1162712,1162811-1163646,1163725-1164092,1164181-1164286	AT2G03810.1  CDS  gene_syn T18C20.1, T18C20_1  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function molecular_function|GO:0003674||ND  product 18S pre-ribosomal assembly protein gar2-related  note 18S pre-ribosomal assembly protein gar2-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13650.2); Has 7074 Blast hits to 3720 proteins in 381 species: Archae - 11; Bacteria - 2271; Metazoa - 1824; Fungi - 543; Plants - 169; Viruses - 56; Other Eukaryotes - 2200 (source: NCBI BLink).  protein_id AT2G03810.1p  transcript_id AT2G03810.1  protein_id AT2G03810.1p  transcript_id AT2G03810.1  
At2g03810	chr2:001162703	0.0	W/1162703-1162712,1162811-1163646,1163725-1164092,1164181-1164286	AT2G03810.2  CDS  gene_syn T18C20.1, T18C20_1  go_component plasma membrane|GO:0005886|17317660|IDA  go_function molecular_function|GO:0003674||ND  product 18S pre-ribosomal assembly protein gar2-related  note 18S pre-ribosomal assembly protein gar2-related; FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13650.2); Has 7074 Blast hits to 3720 proteins in 381 species: Archae - 11; Bacteria - 2271; Metazoa - 1824; Fungi - 543; Plants - 169; Viruses - 56; Other Eukaryotes - 2200 (source: NCBI BLink).  protein_id AT2G03810.2p  transcript_id AT2G03810.2  protein_id AT2G03810.2p  transcript_id AT2G03810.2  
At2g03810	chr2:001162703	0.0	W/1162703-1162712,1162811-1163646,1163725-1164092,1164181-1164286	AT2G03810.3  CDS  gene_syn T18C20.1, T18C20_1  go_component plasma membrane|GO:0005886|17317660|IDA  go_function molecular_function|GO:0003674||ND  product 18S pre-ribosomal assembly protein gar2-related  note 18S pre-ribosomal assembly protein gar2-related; FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13650.2); Has 7074 Blast hits to 3720 proteins in 381 species: Archae - 11; Bacteria - 2271; Metazoa - 1824; Fungi - 543; Plants - 169; Viruses - 56; Other Eukaryotes - 2200 (source: NCBI BLink).  protein_id AT2G03810.3p  transcript_id AT2G03810.3  protein_id AT2G03810.3p  transcript_id AT2G03810.3  
At2g03810	chr2:001162703	0.0	W/1162703-1162712,1162811-1163646,1163725-1164092,1164181-1164286	AT2G03810.4  CDS  gene_syn T18C20.1, T18C20_1  go_component plasma membrane|GO:0005886|17317660|IDA  go_function molecular_function|GO:0003674||ND  product 18S pre-ribosomal assembly protein gar2-related  note 18S pre-ribosomal assembly protein gar2-related; FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13650.2); Has 7074 Blast hits to 3720 proteins in 381 species: Archae - 11; Bacteria - 2271; Metazoa - 1824; Fungi - 543; Plants - 169; Viruses - 56; Other Eukaryotes - 2200 (source: NCBI BLink).  protein_id AT2G03810.4p  transcript_id AT2G03810.4  protein_id AT2G03810.4p  transcript_id AT2G03810.4  
At2g03820	chr2:001165149	0.0	C/1165149-1166699	AT2G03820.1  CDS  gene_syn T18C20.2, T18C20_2  go_component cellular_component|GO:0005575||ND  go_process nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|GO:0000184||ISS  go_function molecular_function|GO:0003674||ND  product nonsense-mediated mRNA decay NMD3 family protein  note nonsense-mediated mRNA decay NMD3 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NMD3 (InterPro:IPR007064); Has 355 Blast hits to 345 proteins in 156 species: Archae - 8; Bacteria - 0; Metazoa - 129; Fungi - 90; Plants - 42; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT2G03820.1p  transcript_id AT2G03820.1  protein_id AT2G03820.1p  transcript_id AT2G03820.1  
At2g03821	chr2:001167576	0.0	C/1167576-1167842	AT2G03821.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT2G03821.1p  transcript_id AT2G03821.1  protein_id AT2G03821.1p  transcript_id AT2G03821.1  
At2g03822	chr2:001168200	0.0	W/1168200-1168373	AT2G03822.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G03822.1p  transcript_id AT2G03822.1  protein_id AT2G03822.1p  transcript_id AT2G03822.1  
At2g03830	chr2:001171226	0.0	W/1171226-1171334,1171416-1171480,1171576-1171633,1172008-1172147	AT2G03830.1  CDS  gene_syn T18C20.3, T18C20_3  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, sepal, flower, root; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G03830.1p  transcript_id AT2G03830.1  protein_id AT2G03830.1p  transcript_id AT2G03830.1  
At2g03840	chr2:001173170	0.0	W/1173170-1173718,1173828-1174115	AT2G03840.1  CDS  gene_syn T18C20.4, T18C20_4, TET13, TETRASPANIN13  gene TET13  function Member of TETRASPANIN family  go_component integral to membrane|GO:0016021||IEA  go_process aging|GO:0007568||ISS  go_function molecular_function|GO:0003674||ND  product TET13 (TETRASPANIN13)  note TETRASPANIN13 (TET13); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; LOCATED IN: integral to membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: TET8 (TETRASPANIN8) (TAIR:AT2G23810.1); Has 205 Blast hits to 205 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 205; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G03840.1p  transcript_id AT2G03840.1  protein_id AT2G03840.1p  transcript_id AT2G03840.1  
At2g03850	chr2:001175653	0.0	W/1175653-1175870,1176240-1176597	AT2G03850.1  CDS  gene_syn T18C20.5, T18C20_5  go_process embryonic development ending in seed dormancy|GO:0009793||ISS  go_function molecular_function|GO:0003674||ND  product late embryogenesis abundant domain-containing protein / LEA domain-containing protein  note late embryogenesis abundant domain-containing protein / LEA domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: late embryogenesis abundant domain-containing protein / LEA domain-containing protein (TAIR:AT2G03740.1); Has 393 Blast hits to 214 proteins in 69 species: Archae - 1; Bacteria - 67; Metazoa - 15; Fungi - 12; Plants - 269; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT2G03850.1p  transcript_id AT2G03850.1  protein_id AT2G03850.1p  transcript_id AT2G03850.1  
At2g03860	chr2:001176899	0.0	W/1176899-1177637	AT2G03860.1  mRNA_TE_gene  pseudo  gene_syn T18C20.6  note Transposable element gene, copia-like retrotransposon family, has a 4.0e-62 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea)  
At2g03870	chr2:001180306	0.0	W/1180306-1180308,1180394-1180475,1180578-1180649,1180967-1181019,1181167-1181256	AT2G03870.1  CDS  gene_syn T18C20.7, T18C20_7  go_component nucleus|GO:0005634||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_function molecular_function|GO:0003674||ND  product small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative  note small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative; FUNCTIONS IN: molecular_function unknown; LOCATED IN: small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U6 snRNA-associated Sm-like protein LSm7 (InterPro:IPR017132), Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) (TAIR:AT2G23930.1); Has 1044 Blast hits to 1044 proteins in 205 species: Archae - 177; Bacteria - 0; Metazoa - 383; Fungi - 213; Plants - 121; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).  protein_id AT2G03870.1p  transcript_id AT2G03870.1  protein_id AT2G03870.1p  transcript_id AT2G03870.1  
At2g03870	chr2:001180306	0.0	W/1180306-1180308,1180394-1180475,1180578-1180649,1180967-1181019,1181167-1181256	AT2G03870.2  CDS  gene_syn T18C20.7, T18C20_7  go_component nucleus|GO:0005634||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_function molecular_function|GO:0003674||ND  product small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative  note small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative; FUNCTIONS IN: molecular_function unknown; LOCATED IN: small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U6 snRNA-associated Sm-like protein LSm7 (InterPro:IPR017132), Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) (TAIR:AT2G23930.1); Has 1044 Blast hits to 1044 proteins in 205 species: Archae - 177; Bacteria - 0; Metazoa - 383; Fungi - 213; Plants - 121; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).  protein_id AT2G03870.2p  transcript_id AT2G03870.2  protein_id AT2G03870.2p  transcript_id AT2G03870.2  
At2g03880	chr2:001181560	0.0	W/1181560-1183452	AT2G03880.1  CDS  gene_syn T18C20.8, T18C20_8  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24000.1); Has 15464 Blast hits to 5346 proteins in 176 species: Archae - 3; Bacteria - 17; Metazoa - 78; Fungi - 80; Plants - 14907; Viruses - 0; Other Eukaryotes - 379 (source: NCBI BLink).  protein_id AT2G03880.1p  transcript_id AT2G03880.1  protein_id AT2G03880.1p  transcript_id AT2G03880.1  
At2g03890	chr2:001186199	0.0	W/1186199-1186498,1186859-1188151	AT2G03890.2  CDS  gene_syn T18C20.9, T18C20_9  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_component cellular_component|GO:0005575||ND  go_function inositol or phosphatidylinositol kinase activity|GO:0004428||ISS  product phosphatidylinositol 3- and 4-kinase family protein  note phosphatidylinositol 3- and 4-kinase family protein; FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3- and 4-kinase, catalytic (InterPro:IPR000403); BEST Arabidopsis thaliana protein match is: phosphatidylinositol 3- and 4-kinase family protein (TAIR:AT1G13640.1); Has 290 Blast hits to 240 proteins in 57 species: Archae - 0; Bacteria - 2; Metazoa - 42; Fungi - 0; Plants - 181; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT2G03890.2p  transcript_id AT2G03890.2  protein_id AT2G03890.2p  transcript_id AT2G03890.2  
At2g03890	chr2:001186199	0.0	W/1186199-1188151	AT2G03890.1  CDS  gene_syn T18C20.9, T18C20_9  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_component cellular_component|GO:0005575||ND  go_function inositol or phosphatidylinositol kinase activity|GO:0004428||ISS  product phosphatidylinositol 3- and 4-kinase family protein  note phosphatidylinositol 3- and 4-kinase family protein; FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3- and 4-kinase, catalytic (InterPro:IPR000403); BEST Arabidopsis thaliana protein match is: phosphatidylinositol 3- and 4-kinase family protein (TAIR:AT1G13640.1); Has 415 Blast hits to 408 proteins in 124 species: Archae - 0; Bacteria - 2; Metazoa - 148; Fungi - 52; Plants - 137; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT2G03890.1p  transcript_id AT2G03890.1  protein_id AT2G03890.1p  transcript_id AT2G03890.1  
At2g03900	chr2:001191786	0.0	C/1191786-1192996	AT2G03900.1  pseudogenic_transcript  pseudo  gene_syn T18C20.10  note pseudogene, similar to iron-regulated transporter 2, blastp match of 57% identity and 4.0e-59 P-value to GP|9716482|gb|AAF97510.1|AF246266_2|AF246266 iron-regulated transporter 2 {Lycopersicon esculentum}  
At2g03910	chr2:001194702	0.0	C/1194702-1195599	AT2G03910.1  pseudogenic_transcript  pseudo  gene_syn F3C11.2, F3C11_2  note pseudogene, similar to P0506E04.5, blastp match of 31% identity and 1.4e-07 P-value to GP|15623870|dbj|BAB67928.1||AP003272 P0506E04.5 {Oryza sativa (japonica cultivar-group)}  
At2g03913	chr2:001197885	0.0	W/1197885-1197966,1198110-1198249	AT2G03913.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G03936.1); Has 18 Blast hits to 18 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G03913.1p  transcript_id AT2G03913.1  protein_id AT2G03913.1p  transcript_id AT2G03913.1  
At2g03915	chr2:001199311	0.0	C/1199311-1200432	AT2G03915.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g03920	chr2:001201318	0.0	C/1201318-1203687	AT2G03920.1  mRNA_TE_gene  pseudo  gene_syn F3C11.3  note Transposable element gene, pseudogene, hypothetical protein  
At2g03930	chr2:001206121	0.0	C/1206121-1206249,1205409-1205579,1205274-1205327,1204920-1205060	AT2G03930.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18460.1); Has 246 Blast hits to 242 proteins in 14 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 4; Plants - 238; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G03930.2p  transcript_id AT2G03930.2  protein_id AT2G03930.2p  transcript_id AT2G03930.2  
At2g03932	chr2:001213233	0.0	W/1213233-1213274,1213420-1213650	AT2G03932.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G03955.1); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G03932.1p  transcript_id AT2G03932.1  protein_id AT2G03932.1p  transcript_id AT2G03932.1  
At2g03931	chr2:001214428	0.0	W/1214428-1214515,1214704-1214843	AT2G03931.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G03936.1); Has 31 Blast hits to 31 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G03931.1p  transcript_id AT2G03931.1  protein_id AT2G03931.1p  transcript_id AT2G03931.1  
At2g03938	chr2:001215316	0.0	W/1215316-1215465	AT2G03938.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G03938.1p  transcript_id AT2G03938.1  protein_id AT2G03938.1p  transcript_id AT2G03938.1  
At2g03933	chr2:001217568	0.0	W/1217568-1217655,1217793-1217932	AT2G03933.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G03937.2); Has 30 Blast hits to 30 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G03933.1p  transcript_id AT2G03933.1  protein_id AT2G03933.1p  transcript_id AT2G03933.1  
At2g03934	chr2:001219720	0.0	W/1219720-1220265	AT2G03934.1  pseudogenic_transcript  pseudo  function Encodes a defensin-like (DEFL) family protein.  
At2g03936	chr2:001221111	0.0	W/1221111-1221202,1221369-1221522	AT2G03936.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G03931.1); Has 22 Blast hits to 22 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G03936.1p  transcript_id AT2G03936.1  protein_id AT2G03936.1p  transcript_id AT2G03936.1  
At2g03937	chr2:001224389	0.0	W/1224389-1224477,1224663-1224753	AT2G03937.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G03933.1); Has 9 Blast hits to 9 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G03937.1p  transcript_id AT2G03937.1  protein_id AT2G03937.1p  transcript_id AT2G03937.1  
At2g03937	chr2:001224432	0.0	W/1224432-1224477,1224614-1224753	AT2G03937.2  CDS  function Encodes a defensin-like (DEFL) family protein.  product unknown protein  note BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G03933.1); Has 14 Blast hits to 14 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G03937.2p  transcript_id AT2G03937.2  protein_id AT2G03937.2p  transcript_id AT2G03937.2  
At2g03935	chr2:001227749	0.0	C/1227749-1228433	AT2G03935.1  pseudogenic_transcript  pseudo  function pseudogene similar to putative carboxyl-terminal proteinase  note expressed protein, no suitable start codon could be identified. This may be a pseudogene.  
At2g03940	chr2:001229288	0.0	W/1229288-1232499	AT2G03940.1  mRNA_TE_gene  pseudo  gene_syn F3C11.5  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.9e-15 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)  
At2g03950	chr2:001232666	0.0	C/1232666-1233185	AT2G03950.1  mRNA_TE_gene  pseudo  gene_syn F3C11.6  note Transposable element gene, pseudogene, similar to P0518C01.31, similar to MURA transposase of maize Mutator transposon; blastp match of 65% identity and 3.4e-20 P-value to GP|15289997|dbj|BAB63692.1||AP003277 P0518C01.31 {Oryza sativa (japonica cultivar-group)}  
At2g03955	chr2:001238677	0.0	W/1238677-1238770,1238932-1239071	AT2G03955.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G03933.1); Has 28 Blast hits to 28 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G03955.1p  transcript_id AT2G03955.1  protein_id AT2G03955.1p  transcript_id AT2G03955.1  
At2g03958	chr2:001243663	0.0	W/1243663-1243992	AT2G03958.1  pseudogenic_transcript  pseudo  function Encodes a defensin-like (DEFL) family protein.  
At2g03960	chr2:001246148	0.0	C/1246148-1249170	AT2G03960.1  pseudogenic_transcript  pseudo  gene_syn F3C11.7  note pseudogene, similar to putative carboxyl-terminal proteinase, blastp match of 43% identity and 4.7e-54 P-value to GP|21389708|gb|AAK84952.2||AY039662 putative carboxyl-terminal proteinase {Gossypium hirsutum}  
At2g03970	chr2:001253609	0.0	W/1253609-1254478	AT2G03970.1  mRNA_TE_gene  pseudo  gene_syn F3C11.8  note Transposable element gene, pseudogene, similar to SAE1-S9-protein, blastp match of 33% identity and 1.2e-17 P-value to GP|4760708|dbj|BAA77394.1||AB012866 SAE1-S9-protein {Brassica rapa}  
At2g03972	chr2:001255248	0.0	C/1255248-1256399	AT2G03972.2  pseudogenic_transcript  pseudo  function pseudogene of heat shock protein  
At2g03972	chr2:001255248	0.0	C/1255248-1256399	AT2G03972.2  pseudogenic_transcript  pseudo  function pseudogene of heat shock protein  
At2g03980	chr2:001260907	0.0	W/1260907-1261189,1261414-1261544,1261634-1261855,1261941-1262408	AT2G03980.1  CDS  gene_syn F3C11.9, F3C11_9  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT2G04020.1); Has 1665 Blast hits to 1654 proteins in 110 species: Archae - 0; Bacteria - 133; Metazoa - 1; Fungi - 12; Plants - 1502; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT2G03980.1p  transcript_id AT2G03980.1  protein_id AT2G03980.1p  transcript_id AT2G03980.1  
At2g03990	chr2:001265118	0.0	W/1265118-1267026	AT2G03990.1  mRNA_TE_gene  pseudo  gene_syn F3C11.10  note Transposable element gene, pseudogene, hypothetical protein  
At2g04000	chr2:001267762	0.0	C/1267762-1268337	AT2G04000.1  mRNA_TE_gene  pseudo  gene_syn F3C11.11, F3C11_11  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G29700.1)  
At2g04010	chr2:001269099	0.0	C/1269099-1271157	AT2G04010.1  mRNA_TE_gene  pseudo  gene_syn F3C11.12  note Transposable element gene, Mutator-like transposase family, has a 3.3e-76 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g04020	chr2:001274427	0.0	W/1274427-1274709,1274860-1274990,1275066-1275290,1275378-1275524	AT2G04020.1  CDS  gene_syn F3C11.13, F3C11_13  go_component endomembrane system|GO:0012505||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: N-terminal protein myristoylation, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT2G03980.1); Has 1411 Blast hits to 1403 proteins in 51 species: Archae - 0; Bacteria - 10; Metazoa - 1; Fungi - 0; Plants - 1400; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G04020.1p  transcript_id AT2G04020.1  protein_id AT2G04020.1p  transcript_id AT2G04020.1  
At2g04025	chr2:001277603	0.0	C/1277603-1277678,1277349-1277395,1276899-1277108	AT2G04025.1  CDS  gene_syn F3C11.1, F3C11_1  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, root, carpel; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13620.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G04025.1p  transcript_id AT2G04025.1  protein_id AT2G04025.1p  transcript_id AT2G04025.1  
At2g04030	chr2:001281983	0.0	W/1281983-1282234,1282343-1282416,1282502-1282627,1282718-1282811,1282902-1282985,1283073-1283216,1283299-1283415,1283498-1283533,1283647-1283727,1283805-1283909,1284005-1284145,1284237-1284329,1284419-1284496,1284575-1284829,1284912-1285014,1285096-1285270,1285366-1285471,1285552-1285641,1285721-1285909	AT2G04030.1  CDS  gene_syn CR88, EMB1956, EMBRYO DEFECTIVE 1956, F3C11.14, F3C11_14, HEAT SHOCK PROTEIN 90.5, HSP90.5  gene CR88  function Encodes a chloroplast-targeted 90-kDa heat shock protein located in the stroma involved in red-light mediated deetiolation response. Mutants are resistant to chlorate, have elongated hypocotyls in light, and affect the expression of NR2, CAB, and RBCS but NOT NR1 and NiR.  go_component mitochondrion|GO:0005739|17137349|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component chloroplast stroma|GO:0009570|12943545|IDA  go_process protein folding|GO:0006457||ISS  go_process response to heat|GO:0009408|12943545|IEP  go_process response to water deprivation|GO:0009414|19148673|IMP  go_process response to salt stress|GO:0009651|19148673|IMP  go_process de-etiolation|GO:0009704|9014362|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process response to chlorate|GO:0010157|9014362|IMP  go_function ATP binding|GO:0005524||ISS  product CR88; ATP binding  note CR88; FUNCTIONS IN: ATP binding; INVOLVED IN: in 7 processes; LOCATED IN: mitochondrion, plasma membrane, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp90 (InterPro:IPR001404), ATP-binding region, ATPase-like (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: ATP binding (TAIR:AT3G07770.1); Has 6449 Blast hits to 6402 proteins in 1670 species: Archae - 4; Bacteria - 2079; Metazoa - 1346; Fungi - 247; Plants - 279; Viruses - 0; Other Eukaryotes - 2494 (source: NCBI BLink).  protein_id AT2G04030.1p  transcript_id AT2G04030.1  protein_id AT2G04030.1p  transcript_id AT2G04030.1  
At2g04030	chr2:001281983	0.0	W/1281983-1282234,1282343-1282416,1282502-1282627,1282718-1282811,1282902-1282985,1283073-1283216,1283299-1283415,1283498-1283533,1283647-1283727,1283805-1283909,1284005-1284145,1284237-1284329,1284419-1284496,1284584-1284829,1284912-1285014,1285096-1285270,1285366-1285471,1285552-1285641,1285721-1285909	AT2G04030.2  CDS  gene_syn CR88, EMB1956, EMBRYO DEFECTIVE 1956, F3C11.14, F3C11_14, HEAT SHOCK PROTEIN 90.5, HSP90.5  gene CR88  function Encodes a chloroplast-targeted 90-kDa heat shock protein located in the stroma involved in red-light mediated deetiolation response. Mutants are resistant to chlorate, have elongated hypocotyls in light, and affect the expression of NR2, CAB, and RBCS but NOT NR1 and NiR.  go_component mitochondrion|GO:0005739|17137349|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component chloroplast stroma|GO:0009570|12943545|IDA  go_process protein folding|GO:0006457||ISS  go_process response to heat|GO:0009408|12943545|IEP  go_process response to water deprivation|GO:0009414|19148673|IMP  go_process response to salt stress|GO:0009651|19148673|IMP  go_process de-etiolation|GO:0009704|9014362|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process response to chlorate|GO:0010157|9014362|IMP  go_function ATP binding|GO:0005524||ISS  product CR88; ATP binding  note CR88; FUNCTIONS IN: ATP binding; INVOLVED IN: in 7 processes; LOCATED IN: mitochondrion, chloroplast stroma, plasma membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp90 (InterPro:IPR001404), ATP-binding region, ATPase-like (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: ATP binding (TAIR:AT3G07770.1); Has 6444 Blast hits to 6399 proteins in 1670 species: Archae - 4; Bacteria - 2079; Metazoa - 1345; Fungi - 247; Plants - 279; Viruses - 0; Other Eukaryotes - 2490 (source: NCBI BLink).  protein_id AT2G04030.2p  transcript_id AT2G04030.2  protein_id AT2G04030.2p  transcript_id AT2G04030.2  
At2g04032	chr2:001289944	0.0	W/1289944-1290585,1290710-1290859,1290946-1291251	AT2G04032.1  CDS  gene_syn F3L12.21, ZINC TRANSPORTER 7 PRECURSOR, ZIP7  gene ZIP7  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process zinc ion transport|GO:0006829||IEA  go_process metal ion transport|GO:0030001||IEA  go_function zinc ion transmembrane transporter activity|GO:0005385||IEA  go_function metal ion transmembrane transporter activity|GO:0046873||IEA  go_process cation transport|GO:0006812||ISS  go_function cation transmembrane transporter activity|GO:0008324||ISS  product ZIP7 (ZINC TRANSPORTER 7 PRECURSOR); cation transmembrane transporter/ metal ion transmembrane transporter/ zinc ion transmembrane transporter  note ZINC TRANSPORTER 7 PRECURSOR (ZIP7); FUNCTIONS IN: cation transmembrane transporter activity, zinc ion transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: cation transport, zinc ion transport, metal ion transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal and plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: IRT1 (iron-regulated transporter 1); cadmium ion transmembrane transporter/ copper uptake transmembrane transporter/ iron ion transmembrane transporter/ manganese ion transmembrane transporter/ zinc ion transmembrane transporter (TAIR:AT4G19690.2); Has 1314 Blast hits to 1247 proteins in 219 species: Archae - 0; Bacteria - 98; Metazoa - 346; Fungi - 382; Plants - 314; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink).  protein_id AT2G04032.1p  transcript_id AT2G04032.1  protein_id AT2G04032.1p  transcript_id AT2G04032.1  
At2g04033	chr2:001293112	0.0	W/1293112-1293488	AT2G04033.1  pseudogenic_transcript  pseudo  function Encodes a defensin-like (DEFL) family protein.  
At2g04035	chr2:001293576	0.0	C/1293576-1294533	AT2G04035.1  mRNA_TE_gene  pseudo  gene_syn F3L12.22  note Transposable element gene, pseudogene, hypothetical protein, similar to (GB:AC005508)  
At2g04034	chr2:001297161	0.0	W/1297161-1297209,1297314-1297543	AT2G04034.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04925.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G04034.1p  transcript_id AT2G04034.1  protein_id AT2G04034.1p  transcript_id AT2G04034.1  
At2g04042	chr2:001298496	0.0	W/1298496-1300722	AT2G04042.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.0e-26 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g04031	chr2:001304324	0.0	C/1304324-1304779	AT2G04031.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04041.1); Has 44 Blast hits to 44 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G04031.1p  transcript_id AT2G04031.1  protein_id AT2G04031.1p  transcript_id AT2G04031.1  
At2g04037	chr2:001305663	0.0	C/1305663-1306136	AT2G04037.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04041.1); Has 46 Blast hits to 46 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G04037.1p  transcript_id AT2G04037.1  protein_id AT2G04037.1p  transcript_id AT2G04037.1  
At2g04041	chr2:001308089	0.0	C/1308089-1308544	AT2G04041.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04031.1); Has 47 Blast hits to 47 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G04041.1p  transcript_id AT2G04041.1  protein_id AT2G04041.1p  transcript_id AT2G04041.1  
At2g04043	chr2:001312584	0.0	W/1312584-1314038	AT2G04043.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 3.7e-41 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At2g04045	chr2:001314788	0.0	W/1314788-1314836,1314938-1315224	AT2G04045.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04046.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G04045.1p  transcript_id AT2G04045.1  protein_id AT2G04045.1p  transcript_id AT2G04045.1  
At2g04046	chr2:001315860	0.0	W/1315860-1315908,1316013-1316296	AT2G04046.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04045.1); Has 8 Blast hits to 8 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G04046.1p  transcript_id AT2G04046.1  protein_id AT2G04046.1p  transcript_id AT2G04046.1  
At2g04047	chr2:001317153	0.0	W/1317153-1317386	AT2G04047.1  pseudogenic_transcript  pseudo  function Encodes a defensin-like (DEFL) family protein.  
At2g04036	chr2:001327909	0.0	W/1327909-1330024	AT2G04036.1  mRNA_TE_gene  pseudo  gene_syn F3L12.5  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 2.6e-169 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At2g04038	chr2:001331919	0.0	W/1331919-1332419	AT2G04038.1  CDS  gene_syn Arabidopsis thaliana basic leucine-zipper 48, AtbZIP48, F3L12.14, F3L12_14  gene AtbZIP48  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  product AtbZIP48 (Arabidopsis thaliana basic leucine-zipper 48); DNA binding / transcription factor  note Arabidopsis thaliana basic leucine-zipper 48 (AtbZIP48); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: male gametophyte, root, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: AtbZIP58 (Arabidopsis thaliana basic leucine-zipper 58); DNA binding / protein heterodimerization/ protein homodimerization/ transcription factor (TAIR:AT1G13600.1); Has 1394 Blast hits to 1392 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 89; Fungi - 26; Plants - 1191; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT2G04038.1p  transcript_id AT2G04038.1  protein_id AT2G04038.1p  transcript_id AT2G04038.1  
At2g04039	chr2:001333464	0.0	W/1333464-1333565,1333640-1333703,1333778-1333983,1334125-1334197,1334284-1334438	AT2G04039.1  CDS  gene_syn F3L12.11, F3L12_11  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 128 Blast hits to 128 proteins in 41 species: Archae - 0; Bacteria - 63; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT2G04039.1p  transcript_id AT2G04039.1  protein_id AT2G04039.1p  transcript_id AT2G04039.1  
At2g04039	chr2:001333464	0.0	W/1333464-1333565,1333640-1333703,1333778-1333983,1334125-1334202,1334287-1334457	AT2G04039.3  CDS  gene_syn F3L12.11, F3L12_11  go_component chloroplast|GO:0009507|18431481|IDA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G04039.3p  transcript_id AT2G04039.3  protein_id AT2G04039.3p  transcript_id AT2G04039.3  
At2g04039	chr2:001333714	0.0	W/1333714-1333983,1334125-1334197,1334284-1334438	AT2G04039.2  CDS  gene_syn F3L12.11, F3L12_11  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 126 Blast hits to 126 proteins in 41 species: Archae - 0; Bacteria - 63; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT2G04039.2p  transcript_id AT2G04039.2  protein_id AT2G04039.2p  transcript_id AT2G04039.2  
At2g04040	chr2:001336235	0.0	C/1336235-1336480,1335602-1336146,1335424-1335510,1335286-1335342,1334749-1335193,1334614-1334664	AT2G04040.1  CDS  gene_syn ATDTX1, F3L12.13, F3L12_13, TX1  gene TX1  function AtDTX1 (At2g04040) has been identified as a detoxifying efflux carrier for plant-derived antibiotics and other toxic compounds, including CD2+.  go_component plasma membrane|GO:0005886|11739388|IDA  go_component membrane|GO:0016020||ISS  go_process cadmium ion transport|GO:0015691|11739388|IDA  go_process sequestering of metal ion|GO:0051238|11739388|IDA  go_function transporter activity|GO:0005215||ISS  go_function multidrug transporter activity|GO:0015239|11739388|IDA  go_function antiporter activity|GO:0015297||ISS  go_function multidrug efflux pump activity|GO:0015559|11739388|IDA  product TX1; antiporter/ multidrug efflux pump/ multidrug transporter/ transporter  note TX1; FUNCTIONS IN: antiporter activity, transporter activity, multidrug efflux pump activity, multidrug transporter activity; INVOLVED IN: cadmium ion transport, sequestering of metal ion; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: stem, flower, root, stamen, leaf; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT2G04050.1); Has 5345 Blast hits to 5287 proteins in 1078 species: Archae - 89; Bacteria - 3327; Metazoa - 124; Fungi - 208; Plants - 681; Viruses - 0; Other Eukaryotes - 916 (source: NCBI BLink).  protein_id AT2G04040.1p  transcript_id AT2G04040.1  protein_id AT2G04040.1p  transcript_id AT2G04040.1  
At2g04050	chr2:001339025	0.0	C/1339025-1339270,1338389-1338933,1338207-1338293,1338065-1338121,1337544-1337988,1337386-1337436	AT2G04050.1  CDS  gene_syn F3L12.12, F3L12_12  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; EXPRESSED IN: stem, leaf whorl, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: antiporter/ drug transporter/ transporter (TAIR:AT2G04070.1); Has 5082 Blast hits to 5012 proteins in 1021 species: Archae - 99; Bacteria - 3072; Metazoa - 125; Fungi - 208; Plants - 680; Viruses - 0; Other Eukaryotes - 898 (source: NCBI BLink).  protein_id AT2G04050.1p  transcript_id AT2G04050.1  protein_id AT2G04050.1p  transcript_id AT2G04050.1  
At2g04060	chr2:001345096	0.0	C/1345096-1345164,1344395-1344482,1344191-1344309,1343957-1344106,1343768-1343804,1343538-1343681,1343343-1343452,1343142-1343264,1342856-1342963,1342137-1342598	AT2G04060.1  CDS  gene_syn F3L12.16, F3L12_16  go_component beta-galactosidase complex|GO:0009341||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  go_function cation binding|GO:0043169||IEA  go_function beta-galactosidase activity|GO:0004565||ISS  product beta-galactosidase, putative / lactase, putative  note beta-galactosidase, putative / lactase, putative; FUNCTIONS IN: cation binding, beta-galactosidase activity, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: beta-galactosidase complex; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: BGAL15 (beta-galactosidase 15); beta-galactosidase (TAIR:AT1G31740.1); Has 353 Blast hits to 340 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 346; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G04060.1p  transcript_id AT2G04060.1  protein_id AT2G04060.1p  transcript_id AT2G04060.1  
At2g04063	chr2:001350126	0.0	C/1350126-1350177,1349758-1350044	AT2G04063.1  CDS  gene_syn F3L12.1, F3L12_1  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 124 Blast hits to 117 proteins in 22 species: Archae - 0; Bacteria - 8; Metazoa - 43; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT2G04063.1p  transcript_id AT2G04063.1  protein_id AT2G04063.1p  transcript_id AT2G04063.1  
At2g04066	chr2:001353422	0.0	C/1353422-1353517,1353002-1353370,1352887-1352937	AT2G04066.1  CDS  gene_syn F3L12.17, F3L12_17  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  product MATE efflux protein-related  note MATE efflux protein-related; FUNCTIONS IN: drug transporter activity, antiporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT2G04080.1); Has 1556 Blast hits to 1555 proteins in 330 species: Archae - 0; Bacteria - 442; Metazoa - 105; Fungi - 196; Plants - 592; Viruses - 0; Other Eukaryotes - 221 (source: NCBI BLink).  protein_id AT2G04066.1p  transcript_id AT2G04066.1  protein_id AT2G04066.1p  transcript_id AT2G04066.1  
At2g04070	chr2:001355545	0.0	C/1355545-1355790,1354913-1355457,1354735-1354821,1354590-1354646,1354069-1354513,1353947-1353997	AT2G04070.1  CDS  gene_syn F3L12.10, F3L12_10  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product antiporter/ drug transporter/ transporter  note antiporter/ drug transporter/ transporter; FUNCTIONS IN: antiporter activity, drug transporter activity, transporter activity; INVOLVED IN: transport, multidrug transport; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT2G04050.1); Has 4895 Blast hits to 4846 proteins in 1038 species: Archae - 87; Bacteria - 2921; Metazoa - 125; Fungi - 209; Plants - 682; Viruses - 0; Other Eukaryotes - 871 (source: NCBI BLink).  protein_id AT2G04070.1p  transcript_id AT2G04070.1  protein_id AT2G04070.1p  transcript_id AT2G04070.1  
At2g04080	chr2:001358914	0.0	C/1358914-1359159,1358281-1358825,1358100-1358186,1357963-1358019,1357442-1357886,1357327-1357377	AT2G04080.1  CDS  gene_syn F3L12.9, F3L12_9  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: antiporter/ drug transporter/ transporter (TAIR:AT2G04070.1); Has 5209 Blast hits to 5121 proteins in 1030 species: Archae - 95; Bacteria - 3139; Metazoa - 124; Fungi - 208; Plants - 684; Viruses - 0; Other Eukaryotes - 959 (source: NCBI BLink).  protein_id AT2G04080.1p  transcript_id AT2G04080.1  protein_id AT2G04080.1p  transcript_id AT2G04080.1  
At2g04090	chr2:001364436	0.0	C/1364436-1364690,1363816-1364360,1363651-1363737,1363382-1363438,1363070-1363308,1362723-1362991	AT2G04090.1  CDS  gene_syn F3L12.8, F3L12_8  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020|11152613|ISS  go_function transporter activity|GO:0005215||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: drug transporter activity, antiporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT2G04100.1); Has 5254 Blast hits to 5197 proteins in 1058 species: Archae - 73; Bacteria - 3273; Metazoa - 121; Fungi - 208; Plants - 680; Viruses - 0; Other Eukaryotes - 899 (source: NCBI BLink).  protein_id AT2G04090.1p  transcript_id AT2G04090.1  protein_id AT2G04090.1p  transcript_id AT2G04090.1  
At2g04100	chr2:001378797	0.0	C/1378797-1379051,1378174-1378718,1378009-1378095,1377772-1377828,1377455-1377693,1377155-1377360,1377020-1377082	AT2G04100.1  CDS  gene_syn F3L12.7, F3L12_7  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020|11152613|ISS  go_function transporter activity|GO:0005215||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: drug transporter activity, antiporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT2G04090.1); Has 5827 Blast hits to 5747 proteins in 1091 species: Archae - 83; Bacteria - 3728; Metazoa - 122; Fungi - 212; Plants - 684; Viruses - 0; Other Eukaryotes - 998 (source: NCBI BLink).  protein_id AT2G04100.1p  transcript_id AT2G04100.1  protein_id AT2G04100.1p  transcript_id AT2G04100.1  
At2g04110	chr2:001382635	0.0	C/1382635-1383495	AT2G04110.1  pseudogenic_transcript  pseudo  gene_syn F3L12.18  function pseudogene of unknown protein  note expressed protein  
At2g04120	chr2:001388194	0.0	W/1388194-1388947	AT2G04120.1  pseudogenic_transcript  pseudo  gene_syn F3L12.15  note pseudogene, RAS-related GTP binding protein, blastp match of 80% identity and 5.7e-32 P-value to SP|Q39434|RAB2_BETVU Ras-related protein Rab2BV. (Sugar beet) {Beta vulgaris}  
At2g04130	chr2:001389158	0.0	C/1389158-1390976	AT2G04130.1  mRNA_TE_gene  pseudo  gene_syn F3L12.6  note Transposable element gene, copia-like retrotransposon family, has a 8.5e-83 P-value blast match to reverse transcriptase (Ty1_Copia-element) (Arabidopsis thaliana)  
At2g04135	chr2:001391930	0.0	C/1391930-1392938	AT2G04135.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G33303.1); similar to Integrase, catalytic re (GB:ABE86211.1)  
At2g04140	chr2:001398947	0.0	W/1398947-1399228	AT2G04140.1  mRNA_TE_gene  pseudo  gene_syn F3L12.3, F3L12_3  note Transposable element gene, copia-like retrotransposon family, has a 4.1e-12 P-value blast match to GB:AAC24836 pol polyprotein (Ty1_Copia-element) (Candida albicans)  
At2g04150	chr2:001400044	0.0	W/1400044-1401282	AT2G04150.1  pseudogenic_transcript  pseudo  gene_syn F3L12.4  function pseudogene of F-box family protein  note pseudogene, expressed protein  
At2g04160	chr2:001407611	0.0	C/1407611-1407694,1407406-1407521,1407221-1407318,1406966-1407130,1405427-1405535,1403132-1403666,1402940-1403037,1402612-1402857,1402211-1402539,1401450-1401988	AT2G04160.1  CDS  gene_syn AIR3, AUXIN-INDUCED IN ROOT CULTURES 3  gene AIR3  function isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||ISS  go_process response to auxin stimulus|GO:0009733|10080694|IEP  go_process lateral root morphogenesis|GO:0010102|10080694|IEP  go_function serine-type endopeptidase activity|GO:0004252|10080694|ISS  product AIR3; serine-type endopeptidase  note AIR3; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: response to auxin stimulus, proteolysis, lateral root morphogenesis; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: SBT5.4; identical protein binding / serine-type endopeptidase (TAIR:AT5G59810.1); Has 3498 Blast hits to 3237 proteins in 582 species: Archae - 116; Bacteria - 1881; Metazoa - 45; Fungi - 222; Plants - 892; Viruses - 0; Other Eukaryotes - 342 (source: NCBI BLink).  protein_id AT2G04160.1p  transcript_id AT2G04160.1  protein_id AT2G04160.1p  transcript_id AT2G04160.1  
At2g04170	chr2:001418596	0.0	C/1418596-1418711,1418342-1418511,1417967-1418246,1417671-1417837,1417404-1417567	AT2G04170.3  CDS  gene_syn T16B23.2, T16B23_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT5G26280.1); Has 431 Blast hits to 346 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 21; Plants - 389; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT2G04170.3p  transcript_id AT2G04170.3  protein_id AT2G04170.3p  transcript_id AT2G04170.3  
At2g04170	chr2:001418596	0.0	C/1418596-1418711,1418342-1418511,1417967-1418246,1417671-1417837,1417404-1417567	AT2G04170.4  CDS  gene_syn T16B23.2, T16B23_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT5G26280.1); Has 431 Blast hits to 346 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 21; Plants - 389; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT2G04170.4p  transcript_id AT2G04170.4  protein_id AT2G04170.4p  transcript_id AT2G04170.4  
At2g04170	chr2:001418793	0.0	C/1418793-1419156,1418596-1418713,1418342-1418511,1417967-1418246,1417660-1417837	AT2G04170.5  CDS  gene_syn T16B23.2, T16B23_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT5G26280.1).  protein_id AT2G04170.5p  transcript_id AT2G04170.5  protein_id AT2G04170.5p  transcript_id AT2G04170.5  
At2g04170	chr2:001418793	0.0	C/1418793-1419156,1418596-1418713,1418342-1418511,1417967-1418246,1417671-1417837,1417404-1417567	AT2G04170.1  CDS  gene_syn T16B23.2, T16B23_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT5G26280.1); Has 114314 Blast hits to 30606 proteins in 1524 species: Archae - 117; Bacteria - 28499; Metazoa - 58334; Fungi - 5669; Plants - 7541; Viruses - 1316; Other Eukaryotes - 12838 (source: NCBI BLink).  protein_id AT2G04170.1p  transcript_id AT2G04170.1  protein_id AT2G04170.1p  transcript_id AT2G04170.1  
At2g04170	chr2:001418793	0.0	C/1418793-1419156,1418596-1418713,1418342-1418511,1417967-1418246,1417671-1417837,1417404-1417567	AT2G04170.2  CDS  gene_syn T16B23.2, T16B23_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT5G26280.1); Has 114314 Blast hits to 30606 proteins in 1524 species: Archae - 117; Bacteria - 28499; Metazoa - 58334; Fungi - 5669; Plants - 7541; Viruses - 1316; Other Eukaryotes - 12838 (source: NCBI BLink).  protein_id AT2G04170.2p  transcript_id AT2G04170.2  protein_id AT2G04170.2p  transcript_id AT2G04170.2  
At2g04180	chr2:001422038	0.0	W/1422038-1425392	AT2G04180.1  mRNA_TE_gene  pseudo  gene_syn T16B23.3  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 3.6e-05 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At2g04190	chr2:001429903	0.0	C/1429903-1430230,1429691-1429817,1429427-1429596,1428186-1428465,1427890-1428056,1427594-1427757	AT2G04190.1  CDS  gene_syn T16B23.4, T16B23_4  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT2G04170.4); Has 55464 Blast hits to 16717 proteins in 1113 species: Archae - 30; Bacteria - 21054; Metazoa - 18146; Fungi - 3031; Plants - 6013; Viruses - 651; Other Eukaryotes - 6539 (source: NCBI BLink).  protein_id AT2G04190.1p  transcript_id AT2G04190.1  protein_id AT2G04190.1p  transcript_id AT2G04190.1  
At2g04200	chr2:001432567	0.0	W/1432567-1434934	AT2G04200.1  mRNA_TE_gene  pseudo  gene_syn T16B23.5  note Transposable element gene, pseudogene, similar to OSJNBa0052O21.25, blastp match of 34% identity and 6.1e-55 P-value to GP|21740476|emb|CAD40040.1||AL606590 OSJNBa0052O21.25 {Oryza sativa (japonica cultivar-group)}  
At2g04210	chr2:001436128	0.0	W/1436128-1437590	AT2G04210.1  mRNA_TE_gene  pseudo  gene_syn T16B23.6, T16B23_6  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G10070.2); similar to unknown [Solanum tuberosum] (GB:ABC01914.1); contains InterPro domain Putative plant transposon protein; (InterPro:IPR004252)  
At2g04220	chr2:001445401	0.0	W/1445401-1446324	AT2G04220.1  CDS  gene_syn T23O15.16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF868, plant (InterPro:IPR008586); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12690.1); Has 142 Blast hits to 141 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 142; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G04220.1p  transcript_id AT2G04220.1  protein_id AT2G04220.1p  transcript_id AT2G04220.1  
At2g04230	chr2:001448665	0.0	C/1448665-1448678,1447678-1448563,1447424-1447558,1447025-1447336	AT2G04230.1  CDS  gene_syn T23O15.15, T23O15_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G49030.1); Has 1566 Blast hits to 1530 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 1562; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G04230.1p  transcript_id AT2G04230.1  protein_id AT2G04230.1p  transcript_id AT2G04230.1  
At2g04235	chr2:001449414	0.0	W/1449414-1451759,1452125-1452298,1452386-1452457,1452552-1452632,1452707-1452744,1452827-1452914,1452993-1453118,1453463-1453660,1453745-1453824,1453941-1454010,1454088-1454192,1454420-1454525,1454662-1454749,1454829-1455018	AT2G04235.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 481 Blast hits to 268 proteins in 86 species: Archae - 0; Bacteria - 114; Metazoa - 131; Fungi - 39; Plants - 24; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).  protein_id AT2G04235.1p  transcript_id AT2G04235.1  protein_id AT2G04235.1p  transcript_id AT2G04235.1  
At2g04240	chr2:001461816	0.0	C/1461816-1462304	AT2G04240.1  CDS  gene_syn XERICO  gene XERICO  function Encodes a small protein with an N-terminal trans-membrane domain and a RING-H2 zinc finger motif located at the C-terminus. Gene expression is induced by salt and osmotic stress. Transcrips levels are induced by DELLA proteins and repressed by gibberellic acid. Involved in ABA metabolism.  go_process response to osmotic stress|GO:0006970|16792696|IEP  go_process response to salt stress|GO:0009651|16792696|IEP  go_process abscisic acid metabolic process|GO:0009687|17933900|IMP  go_process response to gibberellin stimulus|GO:0009739|17933900|IEP  go_process response to chitin|GO:0010200|17722694|IEP  go_function protein binding|GO:0005515|16792696|IPI  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product XERICO; protein binding / zinc ion binding  note XERICO; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: abscisic acid metabolic process, response to salt stress, response to gibberellin stimulus, response to chitin, response to osmotic stress; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: BRH1 (BRASSINOSTEROID-RESPONSIVE RING-H2); protein binding / zinc ion binding (TAIR:AT3G61460.1); Has 5453 Blast hits to 5445 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 1720; Fungi - 452; Plants - 2183; Viruses - 16; Other Eukaryotes - 1082 (source: NCBI BLink).  protein_id AT2G04240.1p  transcript_id AT2G04240.1  protein_id AT2G04240.1p  transcript_id AT2G04240.1  
At2g04240	chr2:001461816	0.0	C/1461816-1462304	AT2G04240.2  CDS  gene_syn XERICO  gene XERICO  function Encodes a small protein with an N-terminal trans-membrane domain and a RING-H2 zinc finger motif located at the C-terminus. Gene expression is induced by salt and osmotic stress. Transcrips levels are induced by DELLA proteins and repressed by gibberellic acid. Involved in ABA metabolism.  go_process response to osmotic stress|GO:0006970|16792696|IEP  go_process response to salt stress|GO:0009651|16792696|IEP  go_process abscisic acid metabolic process|GO:0009687|17933900|IMP  go_process response to gibberellin stimulus|GO:0009739|17933900|IEP  go_process response to chitin|GO:0010200|17722694|IEP  go_function protein binding|GO:0005515|16792696|IPI  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product XERICO; protein binding / zinc ion binding  note XERICO; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: abscisic acid metabolic process, response to salt stress, response to gibberellin stimulus, response to chitin, response to osmotic stress; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: BRH1 (BRASSINOSTEROID-RESPONSIVE RING-H2); protein binding / zinc ion binding (TAIR:AT3G61460.1); Has 5453 Blast hits to 5445 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 1720; Fungi - 452; Plants - 2183; Viruses - 16; Other Eukaryotes - 1082 (source: NCBI BLink).  protein_id AT2G04240.2p  transcript_id AT2G04240.2  protein_id AT2G04240.2p  transcript_id AT2G04240.2  
At2g04250	chr2:001469300	0.0	C/1469300-1469842	AT2G04250.1  pseudogenic_transcript  pseudo  gene_syn T23O15.12  note pseudogene, hypothetical protein  
At2g04260	chr2:001470757	0.0	W/1470757-1471477	AT2G04260.1  pseudogenic_transcript  pseudo  gene_syn T23O15.11  note pseudogene, BS1-related mitochondrial protein, blastp match of 53% identity and 8.5e-45 P-value to GP|17385707|dbj|BAB78658.1||AP003022 P0681B11.25 {Oryza sativa (japonica cultivar-group)}  
At2g04270	chr2:001474961	0.0	W/1474961-1475055,1475326-1475429,1475600-1475781,1475950-1476208,1476297-1477357,1477440-1477757,1477855-1477896,1478163-1478287,1478380-1478527,1478837-1478909,1479029-1479141,1479257-1479376,1479540-1479695,1479820-1480014	AT2G04270.1  CDS  gene_syn RNASE E/G-LIKE, RNEE/G, T23O15.10, T23O15_10  gene RNEE/G  function Similar to E.coli endoribonuclease E. Functions as a ribonuclease, is located in the chloroplast, and is involved in chloroplast development. Loss of function mutants are white and arrest at the cotyledon stage. The phenotype is rescued by providing sucrose.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|18515828|IDA  go_process chloroplast organization|GO:0009658|18515828|IMP  go_function endoribonuclease activity|GO:0004521|18515828|IDA  product RNEE/G (RNASE E/G-LIKE); endoribonuclease  note RNASE E/G-LIKE (RNEE/G); FUNCTIONS IN: endoribonuclease activity; INVOLVED IN: chloroplast organization; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Immunoglobulin-like fold (InterPro:IPR013783), Carbohydrate-binding-like fold (InterPro:IPR013784), Ribonuclease E and G (InterPro:IPR004659), Glycoside hydrolase, carbohydrate-binding (InterPro:IPR002044); Has 7251 Blast hits to 6284 proteins in 1046 species: Archae - 3; Bacteria - 3601; Metazoa - 4; Fungi - 52; Plants - 46; Viruses - 0; Other Eukaryotes - 3545 (source: NCBI BLink).  protein_id AT2G04270.1p  transcript_id AT2G04270.1  protein_id AT2G04270.1p  transcript_id AT2G04270.1  
At2g04270	chr2:001475753	0.0	W/1475753-1475781,1475973-1476208,1476297-1477357,1477440-1477757,1477855-1477896,1478163-1478287,1478380-1478527,1478837-1478909,1479029-1479141,1479257-1479376,1479540-1479695,1479820-1480014	AT2G04270.2  CDS  gene_syn RNASE E/G-LIKE, RNEE/G, T23O15.10, T23O15_10  gene RNEE/G  function Similar to E.coli endoribonuclease E. Functions as a ribonuclease, is located in the chloroplast, and is involved in chloroplast development. Loss of function mutants are white and arrest at the cotyledon stage. The phenotype is rescued by providing sucrose.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|18515828|IDA  go_process chloroplast organization|GO:0009658|18515828|IMP  go_function endoribonuclease activity|GO:0004521|18515828|IDA  product RNEE/G (RNASE E/G-LIKE); endoribonuclease  note RNASE E/G-LIKE (RNEE/G); FUNCTIONS IN: endoribonuclease activity; INVOLVED IN: chloroplast organization; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Ribonuclease E and G (InterPro:IPR004659); Has 7148 Blast hits to 6181 proteins in 1009 species: Archae - 3; Bacteria - 3574; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 3543 (source: NCBI BLink).  protein_id AT2G04270.2p  transcript_id AT2G04270.2  protein_id AT2G04270.2p  transcript_id AT2G04270.2  
At2g04270	chr2:001476506	0.0	W/1476506-1477357,1477440-1477757,1477855-1477896,1478163-1478287,1478380-1478527,1478837-1478909,1479029-1479141,1479257-1479376,1479540-1479695,1479820-1480014	AT2G04270.4  CDS  gene_syn RNASE E/G-LIKE, RNEE/G, T23O15.10, T23O15_10  gene RNEE/G  function Similar to E.coli endoribonuclease E. Functions as a ribonuclease, is located in the chloroplast, and is involved in chloroplast development. Loss of function mutants are white and arrest at the cotyledon stage. The phenotype is rescued by providing sucrose.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|18515828|IDA  go_process chloroplast organization|GO:0009658|18515828|IMP  go_function endoribonuclease activity|GO:0004521|18515828|IDA  product RNEE/G (RNASE E/G-LIKE); endoribonuclease  note RNASE E/G-LIKE (RNEE/G); FUNCTIONS IN: endoribonuclease activity; INVOLVED IN: chloroplast organization; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribonuclease E and G (InterPro:IPR004659); Has 7142 Blast hits to 6179 proteins in 1008 species: Archae - 3; Bacteria - 3574; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 3537 (source: NCBI BLink).  protein_id AT2G04270.4p  transcript_id AT2G04270.4  protein_id AT2G04270.4p  transcript_id AT2G04270.4  
At2g04270	chr2:001476506	0.0	W/1476506-1477357,1477440-1477757,1477855-1477896,1478163-1478287,1478380-1478527,1478837-1478909,1479029-1479141,1479257-1479445	AT2G04270.3  CDS  gene_syn RNASE E/G-LIKE, RNEE/G, T23O15.10, T23O15_10  gene RNEE/G  function Similar to E.coli endoribonuclease E. Functions as a ribonuclease, is located in the chloroplast, and is involved in chloroplast development. Loss of function mutants are white and arrest at the cotyledon stage. The phenotype is rescued by providing sucrose.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|18515828|IDA  go_process chloroplast organization|GO:0009658|18515828|IMP  go_function endoribonuclease activity|GO:0004521|18515828|IDA  product RNEE/G (RNASE E/G-LIKE); endoribonuclease  note RNASE E/G-LIKE (RNEE/G); FUNCTIONS IN: endoribonuclease activity; INVOLVED IN: chloroplast organization; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribonuclease E and G (InterPro:IPR004659); Has 7128 Blast hits to 6165 proteins in 1008 species: Archae - 3; Bacteria - 3574; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 3523 (source: NCBI BLink).  protein_id AT2G04270.3p  transcript_id AT2G04270.3  protein_id AT2G04270.3p  transcript_id AT2G04270.3  
At2g04280	chr2:001480277	0.0	C/1480277-1481983	AT2G04280.1  CDS  gene_syn T23O15.9, T23O15_9  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12700.1); Has 74 Blast hits to 74 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G04280.1p  transcript_id AT2G04280.1  protein_id AT2G04280.1p  transcript_id AT2G04280.1  
At2g04290	chr2:001485408	0.0	C/1485408-1490783	AT2G04290.1  mRNA_TE_gene  pseudo  gene_syn T23O15.14  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 4.1e-36 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)  
At2g04300	chr2:001493009	0.0	W/1493009-1493099,1493194-1493737,1493833-1494129,1494253-1494311,1494405-1494549,1494649-1494720,1494832-1494903,1495011-1495082,1495168-1495352,1495468-1495685,1495789-1495915,1496003-1496068,1496154-1496343,1496497-1496914	AT2G04300.1  CDS  gene_syn T23O15.8, T23O15_8  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat protein kinase, putative  note leucine-rich repeat protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT3G21340.1); Has 112048 Blast hits to 87575 proteins in 3167 species: Archae - 46; Bacteria - 7850; Metazoa - 38030; Fungi - 6647; Plants - 43866; Viruses - 394; Other Eukaryotes - 15215 (source: NCBI BLink).  protein_id AT2G04300.1p  transcript_id AT2G04300.1  protein_id AT2G04300.1p  transcript_id AT2G04300.1  
At2g04305	chr2:001502749	0.0	C/1502749-1503448,1502468-1502547,1502032-1502296,1501679-1501938	AT2G04305.1  CDS  gene_syn T23O15.7, T23O15_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product magnesium transporter CorA-like protein-related  note magnesium transporter CorA-like protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 926 Blast hits to 926 proteins in 431 species: Archae - 2; Bacteria - 854; Metazoa - 0; Fungi - 8; Plants - 15; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT2G04305.1p  transcript_id AT2G04305.1  protein_id AT2G04305.1p  transcript_id AT2G04305.1  
At2g04310	chr2:001506119	0.0	W/1506119-1508509	AT2G04310.1  mRNA_TE_gene  pseudo  gene_syn T23O15.1  note Transposable element gene, Mutator-like transposase family, has a 6.2e-78 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g04320	chr2:001509377	0.0	W/1509377-1509910	AT2G04320.1  mRNA_TE_gene  pseudo  gene_syn T23O15.5, T23O15_5  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G29700.1)  
At2g04330	chr2:001510450	0.0	C/1510450-1513142	AT2G04330.1  mRNA_TE_gene  pseudo  gene_syn T23O15.4  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G23480.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35794.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G29710.1); similar to unnamed protein product [Asper (GB:BAE61223.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048)  
At2g04340	chr2:001514411	0.0	W/1514411-1514659,1514834-1515022,1515120-1515203	AT2G04340.1  CDS  gene_syn T23O15.19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 18 Blast hits to 17 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G04340.1p  transcript_id AT2G04340.1  protein_id AT2G04340.1p  transcript_id AT2G04340.1  
At2g04350	chr2:001516086	0.0	W/1516086-1516601,1516678-1516758,1516847-1517119,1517212-1517343,1517439-1517612,1517695-1517924,1518091-1518208,1518289-1518420,1518494-1518628,1518723-1518929,1519014-1519178	AT2G04350.1  CDS  gene_syn T23O15.3, T23O15_3  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process fatty acid biosynthetic process|GO:0006633||ISS  go_function long-chain-fatty-acid-CoA ligase activity|GO:0004467||ISS  product long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8)  note long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8); FUNCTIONS IN: long-chain-fatty-acid-CoA ligase activity, catalytic activity; INVOLVED IN: fatty acid biosynthetic process, metabolic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9); long-chain-fatty-acid-CoA ligase (TAIR:AT1G77590.1); Has 43862 Blast hits to 37315 proteins in 2139 species: Archae - 522; Bacteria - 25138; Metazoa - 2389; Fungi - 2269; Plants - 1180; Viruses - 2; Other Eukaryotes - 12362 (source: NCBI BLink).  protein_id AT2G04350.1p  transcript_id AT2G04350.1  protein_id AT2G04350.1p  transcript_id AT2G04350.1  
At2g04350	chr2:001516086	0.0	W/1516086-1516601,1516678-1516758,1516847-1517119,1517212-1517343,1517439-1517612,1517695-1517924,1518091-1518208,1518289-1518420,1518494-1518628,1518723-1518929,1519014-1519178	AT2G04350.2  CDS  gene_syn T23O15.3, T23O15_3  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process fatty acid biosynthetic process|GO:0006633||ISS  go_function long-chain-fatty-acid-CoA ligase activity|GO:0004467||ISS  product long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8)  note long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8); FUNCTIONS IN: long-chain-fatty-acid-CoA ligase activity, catalytic activity; INVOLVED IN: fatty acid biosynthetic process, metabolic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9); long-chain-fatty-acid-CoA ligase (TAIR:AT1G77590.1); Has 43862 Blast hits to 37315 proteins in 2139 species: Archae - 522; Bacteria - 25138; Metazoa - 2389; Fungi - 2269; Plants - 1180; Viruses - 2; Other Eukaryotes - 12362 (source: NCBI BLink).  protein_id AT2G04350.2p  transcript_id AT2G04350.2  protein_id AT2G04350.2p  transcript_id AT2G04350.2  
At2g04360	chr2:001520692	0.0	C/1520692-1521030,1520472-1520617,1520235-1520394,1520013-1520111,1519864-1519946,1519645-1519780	AT2G04360.1  CDS  gene_syn T23O15.18  go_component chloroplast|GO:0009507||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 84 Blast hits to 84 proteins in 36 species: Archae - 0; Bacteria - 60; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT2G04360.1p  transcript_id AT2G04360.1  protein_id AT2G04360.1p  transcript_id AT2G04360.1  
At2g04370	chr2:001524047	0.0	C/1524047-1524121,1523763-1523936	AT2G04370.1  CDS  gene_syn T23O15.2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G04370.1p  transcript_id AT2G04370.1  protein_id AT2G04370.1p  transcript_id AT2G04370.1  
At2g04380	chr2:001525642	0.0	W/1525642-1525742,1526128-1526384,1526429-1526502	AT2G04380.1  CDS  gene_syn T1O3.21, T1O3_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G04380.1p  transcript_id AT2G04380.1  protein_id AT2G04380.1p  transcript_id AT2G04380.1  
At2g04378	chr2:001525738	0.0	C/1525738-1526169	AT2G04378.1  CDS  go_component beta-galactosidase complex|GO:0009341||IEA  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  product beta-galactosidase  note beta-galactosidase; FUNCTIONS IN: beta-galactosidase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system, beta-galactosidase complex; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944); BEST Arabidopsis thaliana protein match is: beta-galactosidase (TAIR:AT5G01080.1); Has 19 Blast hits to 16 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G04378.1p  transcript_id AT2G04378.1  protein_id AT2G04378.1p  transcript_id AT2G04378.1  
At2g04378	chr2:001525785	0.0	C/1525785-1526169,1525640-1525695	AT2G04378.2  CDS  go_component beta-galactosidase complex|GO:0009341||IEA  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  product beta-galactosidase  note beta-galactosidase; FUNCTIONS IN: beta-galactosidase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system, beta-galactosidase complex; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944); BEST Arabidopsis thaliana protein match is: beta-galactosidase (TAIR:AT5G01080.1); Has 14 Blast hits to 14 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G04378.2p  transcript_id AT2G04378.2  protein_id AT2G04378.2p  transcript_id AT2G04378.2  
At2g04390	chr2:001527911	0.0	W/1527911-1528336	AT2G04390.1  CDS  gene_syn T1O3.20, T1O3_20  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S17 (RPS17A)  note 40S ribosomal protein S17 (RPS17A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome, nucleolus, plasma membrane; CONTAINS InterPro DOMAIN/s: Ribosomal protein S17e (InterPro:IPR001210), Ribosomal protein S17e, conserved site (InterPro:IPR018273); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S17 (RPS17D) (TAIR:AT5G04800.4); Has 726 Blast hits to 726 proteins in 256 species: Archae - 117; Bacteria - 0; Metazoa - 270; Fungi - 97; Plants - 83; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT2G04390.1p  transcript_id AT2G04390.1  protein_id AT2G04390.1p  transcript_id AT2G04390.1  
At2g04395	chr2:001529828	0.0	C/1529828-1529954,1529546-1529724,1529430-1529516,1529083-1529166	AT2G04395.1  CDS  go_component nuclear chromosome, telomeric region|GO:0000784||IEA  go_process telomere maintenance|GO:0000723||IEA  go_function DNA binding|GO:0003677||IEA  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: telomere maintenance; LOCATED IN: nuclear chromosome, telomeric region; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Telomere end binding protein (InterPro:IPR011564); BEST Arabidopsis thaliana protein match is: AtPOT1a (Protection of Telomeres 1a); telomeric DNA binding (TAIR:AT2G05210.3); Has 39 Blast hits to 39 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G04395.1p  transcript_id AT2G04395.1  protein_id AT2G04395.1p  transcript_id AT2G04395.1  
At2g04400	chr2:001531208	0.0	W/1531208-1531372,1531593-1531856,1531941-1532117,1532393-1532467,1532558-1532602,1532686-1532850,1532936-1533014,1533149-1533231,1533330-1533398,1533492-1533578	AT2G04400.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|7890741|ISS  go_process tryptophan biosynthetic process|GO:0000162|7610197|TAS  go_function indole-3-glycerol-phosphate synthase activity|GO:0004425|7610197|IGI  product indole-3-glycerol phosphate synthase (IGPS)  note indole-3-glycerol phosphate synthase (IGPS); FUNCTIONS IN: indole-3-glycerol-phosphate synthase activity; INVOLVED IN: tryptophan biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060), Indole-3-glycerol phosphate synthase, central region (InterPro:IPR001468), Indole-3-glycerol phosphate synthase (InterPro:IPR013798); BEST Arabidopsis thaliana protein match is: indole-3-glycerol phosphate synthase, putative (TAIR:AT5G48220.1); Has 5692 Blast hits to 5692 proteins in 1242 species: Archae - 135; Bacteria - 3149; Metazoa - 0; Fungi - 114; Plants - 42; Viruses - 0; Other Eukaryotes - 2252 (source: NCBI BLink).  protein_id AT2G04400.1p  transcript_id AT2G04400.1  protein_id AT2G04400.1p  transcript_id AT2G04400.1  
At2g04410	chr2:001535035	0.0	C/1535035-1535040,1534132-1534314,1534012-1534044	AT2G04410.1  CDS  gene_syn T1O3.18, T1O3_18  go_component plasma membrane|GO:0005886|14506206|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Defence response, Rin4 (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: NOI (TAIR:AT5G55850.1); Has 141 Blast hits to 140 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G04410.1p  transcript_id AT2G04410.1  protein_id AT2G04410.1p  transcript_id AT2G04410.1  
At2g04420	chr2:001535561	0.0	W/1535561-1536226	AT2G04420.1  CDS  gene_syn T1O3.17, T1O3_17  go_component mitochondrion|GO:0005739||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: sperm cell, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT3G25270.1); Has 273 Blast hits to 273 proteins in 40 species: Archae - 0; Bacteria - 62; Metazoa - 0; Fungi - 0; Plants - 210; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G04420.1p  transcript_id AT2G04420.1  protein_id AT2G04420.1p  transcript_id AT2G04420.1  
At2g04425	chr2:001537426	0.0	C/1537426-1537504,1536975-1537201	AT2G04425.1  CDS  gene_syn LCR82, Low-molecular-weight cysteine-rich 82  gene LCR82  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR82 (Low-molecular-weight cysteine-rich 82)  note Low-molecular-weight cysteine-rich 82 (LCR82); LOCATED IN: endomembrane system; Has 10 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G04425.1p  transcript_id AT2G04425.1  protein_id AT2G04425.1p  transcript_id AT2G04425.1  
At2g04430	chr2:001538944	0.0	W/1538944-1539150,1539365-1539430,1539518-1539655,1539972-1540049,1540333-1540383,1540486-1540520,1540605-1540716,1540806-1541027	AT2G04430.1  CDS  gene_syn Arabidopsis thaliana Nudix hydrolase homolog 5, T1O3.16, T1O3_16, atnudt5  gene atnudt5  go_component cytosol|GO:0005829|15878881|RCA  go_function hydrolase activity|GO:0016787||IEA  go_function hydrolase activity|GO:0016787||ISS  product atnudt5 (Arabidopsis thaliana Nudix hydrolase homolog 5); hydrolase  note Arabidopsis thaliana Nudix hydrolase homolog 5 (atnudt5); FUNCTIONS IN: hydrolase activity; LOCATED IN: cytosol; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), NUDIX hydrolase, core (InterPro:IPR000086), Anti-sense to fibroblast growth factor protein GFG (InterPro:IPR003293); BEST Arabidopsis thaliana protein match is: ATNUDT6 (Arabidopsis thaliana Nudix hydrolase homolog 6); ADP-ribose diphosphatase/ NAD or NADH binding / hydrolase (TAIR:AT2G04450.1); Has 1869 Blast hits to 1867 proteins in 436 species: Archae - 16; Bacteria - 904; Metazoa - 164; Fungi - 13; Plants - 89; Viruses - 9; Other Eukaryotes - 674 (source: NCBI BLink).  protein_id AT2G04430.1p  transcript_id AT2G04430.1  protein_id AT2G04430.1p  transcript_id AT2G04430.1  
At2g04440	chr2:001541523	0.0	W/1541523-1541672,1541774-1541839,1541944-1542081,1542256-1542333,1542514-1542729	AT2G04440.1  CDS  gene_syn T1O3.15, T1O3_15  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function catalytic activity|GO:0003824||ISS  product NUDIX/mutT hydrolase family protein  note NUDIX/mutT hydrolase family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), Anti-sense to fibroblast growth factor protein GFG (InterPro:IPR003293), NUDIX hydrolase, core (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: atnudt5 (Arabidopsis thaliana Nudix hydrolase homolog 5); hydrolase (TAIR:AT2G04430.1); Has 251 Blast hits to 233 proteins in 61 species: Archae - 0; Bacteria - 16; Metazoa - 97; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT2G04440.1p  transcript_id AT2G04440.1  protein_id AT2G04440.1p  transcript_id AT2G04440.1  
At2g04450	chr2:001543710	0.0	W/1543710-1543853,1543952-1544017,1544094-1544234,1544458-1544535,1544642-1544692,1544769-1544803,1544894-1545005,1545095-1545319	AT2G04450.1  CDS  gene_syn ATNUDT6, Arabidopsis thaliana Nudix hydrolase homolog 6, T1O3.14, T1O3_14  gene ATNUDT6  go_component cytosol|GO:0005829|15878881|RCA  go_process response to other organism|GO:0051707|16531493|IEP  go_function hydrolase activity|GO:0016787||ISS  go_function ADP-ribose diphosphatase activity|GO:0047631|15878881|IDA  go_function NAD or NADH binding|GO:0051287|15878881|IDA  product ATNUDT6 (Arabidopsis thaliana Nudix hydrolase homolog 6); ADP-ribose diphosphatase/ NAD or NADH binding / hydrolase  note Arabidopsis thaliana Nudix hydrolase homolog 6 (ATNUDT6); FUNCTIONS IN: ADP-ribose diphosphatase activity, hydrolase activity, NAD or NADH binding; INVOLVED IN: response to other organism; LOCATED IN: cytosol; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), Anti-sense to fibroblast growth factor protein GFG (InterPro:IPR003293), NUDIX hydrolase, core (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: NUDT7; ADP-ribose diphosphatase/ NAD or NADH binding / hydrolase/ nucleoside-diphosphatase/ protein homodimerization (TAIR:AT4G12720.3); Has 1950 Blast hits to 1948 proteins in 371 species: Archae - 21; Bacteria - 751; Metazoa - 203; Fungi - 19; Plants - 94; Viruses - 9; Other Eukaryotes - 853 (source: NCBI BLink).  protein_id AT2G04450.1p  transcript_id AT2G04450.1  protein_id AT2G04450.1p  transcript_id AT2G04450.1  
At2g04460	chr2:001547688	0.0	C/1547688-1548257	AT2G04460.1  mRNA_TE_gene  pseudo  gene_syn T1O3.13, T1O3_13  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G10090.1); similar to pol polyprotein [Citrus x paradisi] (GB:AAK70407.1)  
At2g04470	chr2:001550133	0.0	C/1550133-1553029	AT2G04470.1  mRNA_TE_gene  pseudo  gene_syn T1O3.12  note Transposable element gene, copia-like retrotransposon family, has a 1.3e-67 P-value blast match to GB:AAD12998 pol polyprotein (Ty1_Copia-element) (Zea mays)  
At2g04480	chr2:001555404	0.0	C/1555404-1555514,1555048-1555106,1554282-1554855	AT2G04480.1  CDS  gene_syn T1O3.11, T1O3_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, flower, root, leaf; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, LP.02 two leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35870.1); Has 20 Blast hits to 20 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G04480.1p  transcript_id AT2G04480.1  protein_id AT2G04480.1p  transcript_id AT2G04480.1  
At2g04490	chr2:001557260	0.0	C/1557260-1561743	AT2G04490.1  mRNA_TE_gene  pseudo  gene_syn T1O3.10, T1O3_10  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At2g04495	chr2:001564211	0.0	W/1564211-1564819	AT2G04495.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04515.1); Has 17 Blast hits to 17 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G04495.1p  transcript_id AT2G04495.1  protein_id AT2G04495.1p  transcript_id AT2G04495.1  
At2g04500	chr2:001568492	0.0	W/1568492-1569979	AT2G04500.1  CDS  gene_syn T1O3.9, T1O3_9  go_component intracellular|GO:0005622||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, ZZ-type (InterPro:IPR000433), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14980.1); Has 950 Blast hits to 446 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 945; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G04500.1p  transcript_id AT2G04500.1  protein_id AT2G04500.1p  transcript_id AT2G04500.1  
At2g04510	chr2:001570497	0.0	C/1570497-1571827	AT2G04510.1  pseudogenic_transcript  pseudo  gene_syn T1O3.8  note pseudogene, hypothetical protein  
At2g04515	chr2:001573721	0.0	W/1573721-1574311	AT2G04515.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04495.1); Has 13 Blast hits to 13 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G04515.1p  transcript_id AT2G04515.1  protein_id AT2G04515.1p  transcript_id AT2G04515.1  
At2g04520	chr2:001574802	0.0	C/1574802-1575239	AT2G04520.1  CDS  gene_syn T1O3.7, T1O3_7  go_process translational initiation|GO:0006413||IEA  go_function RNA binding|GO:0003723||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_component cellular_component|GO:0005575||ND  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative  note eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), S1, IF1 type (InterPro:IPR006196), Translation initiation factor 1A (eIF-1A), conserved site (InterPro:IPR018104), Translation initiation factor 1A (eIF-1A) (InterPro:IPR001253); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative (TAIR:AT5G35680.2); Has 760 Blast hits to 760 proteins in 211 species: Archae - 192; Bacteria - 0; Metazoa - 195; Fungi - 64; Plants - 47; Viruses - 0; Other Eukaryotes - 262 (source: NCBI BLink).  protein_id AT2G04520.1p  transcript_id AT2G04520.1  protein_id AT2G04520.1p  transcript_id AT2G04520.1  
At2g04530	chr2:001576808	0.0	W/1576808-1577194,1577462-1577624,1577699-1577769,1577835-1577930,1578006-1578119,1578212-1578280,1578356-1578430,1578522-1578611	AT2G04530.1  CDS  gene_syn CPZ, T1O3.6, T1O3_6, TRNASE Z 2, TRZ2  gene CPZ  function Encodes a protein with RNAse Z activity suggesting a role in tRNA processing. Protein contains a signal sequence for import into the chloroplast.  go_component chloroplast|GO:0009507|12032089|ISS  go_process tRNA processing|GO:0008033|12032089|TAS  go_process tRNA 3 -end processing|GO:0042780|19411372|IDA  go_function 3 -tRNA processing endoribonuclease activity|GO:0042781|12032089|IDA  go_function 3 -tRNA processing endoribonuclease activity|GO:0042781|19411372|IDA  product CPZ; 3 -tRNA processing endoribonuclease  note CPZ; FUNCTIONS IN: 3 -tRNA processing endoribonuclease activity; INVOLVED IN: tRNA processing, tRNA 3 -end processing; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: TRZ1 (TRNASE Z 1); 3 -tRNA processing endoribonuclease (TAIR:AT1G74700.1); Has 1167 Blast hits to 1167 proteins in 498 species: Archae - 167; Bacteria - 774; Metazoa - 63; Fungi - 19; Plants - 43; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT2G04530.1p  transcript_id AT2G04530.1  protein_id AT2G04530.1p  transcript_id AT2G04530.1  
At2g04540	chr2:001584527	0.0	C/1584527-1584635,1584219-1584448,1583831-1583929,1583671-1583742,1583476-1583562,1583083-1583234,1582791-1582871,1582673-1582706,1582496-1582562,1582318-1582394,1582118-1582178,1581949-1582031,1581763-1581834,1581521-1581682	AT2G04540.1  CDS  gene_syn T1O3.5, T1O3_5  go_component mitochondrion|GO:0005739||IEA  go_process fatty acid biosynthetic process|GO:0006633||IEA  go_process metabolic process|GO:0008152||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function catalytic activity|GO:0003824||IEA  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_function fatty-acid synthase activity|GO:0004312||ISS  product 3-oxoacyl-(acyl-carrier-protein) synthase II, putative  note 3-oxoacyl-(acyl-carrier-protein) synthase II, putative; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, fatty-acid synthase activity, catalytic activity; INVOLVED IN: biosynthetic process, fatty acid biosynthetic process, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta-ketoacyl synthase (InterPro:IPR000794), Thiolase-like (InterPro:IPR016039), Beta-ketoacyl synthase, C-terminal (InterPro:IPR014031), 3-oxoacyl-[acyl-carrier-protein] synthase 2 (InterPro:IPR017568), Beta-ketoacyl synthase, N-terminal (InterPro:IPR014030), Thiolase-like, subgroup (InterPro:IPR016038), Beta-ketoacyl synthase, active site (InterPro:IPR018201); BEST Arabidopsis thaliana protein match is: FAB1 (FATTY ACID BIOSYNTHESIS 1); 3-oxoacyl-[acyl-carrier-protein] synthase/ fatty-acid synthase (TAIR:AT1G74960.2); Has 19605 Blast hits to 17878 proteins in 2069 species: Archae - 5; Bacteria - 11810; Metazoa - 457; Fungi - 1652; Plants - 223; Viruses - 0; Other Eukaryotes - 5458 (source: NCBI BLink).  protein_id AT2G04540.1p  transcript_id AT2G04540.1  protein_id AT2G04540.1p  transcript_id AT2G04540.1  
At2g04550	chr2:001588538	0.0	W/1588538-1588783,1589044-1589143,1589216-1589273,1589391-1589497,1589576-1589838	AT2G04550.1  CDS  gene_syn IBR5, INDOLE-3-BUTYRIC ACID RESPONSE 5, T1O3.4, T1O3_4  gene IBR5  function Encodes a protein phosphatase that interacts with MPK12, but not with other MAP kinases. It can dephosphorylate a dually phosphorylated MPK12 in vitro and can inactivate MPK12 in vivo. ibr5 mutants have reduced sensitivity to auxin and abscisic acid.  go_component nucleus|GO:0005634|19000167|IDA  go_process protein kinase cascade|GO:0007243|19000167|IC  go_process response to auxin stimulus|GO:0009733|14630970|IMP  go_process response to abscisic acid stimulus|GO:0009737|14630970|IMP  go_process negative regulation of MAP kinase activity|GO:0043407|19000167|IMP  go_function protein tyrosine/serine/threonine phosphatase activity|GO:0008138||ISS  go_function MAP kinase phosphatase activity|GO:0033549|19000167|IDA  product IBR5 (INDOLE-3-BUTYRIC ACID RESPONSE 5); MAP kinase phosphatase/ protein tyrosine/serine/threonine phosphatase  note INDOLE-3-BUTYRIC ACID RESPONSE 5 (IBR5); FUNCTIONS IN: MAP kinase phosphatase activity, protein tyrosine/serine/threonine phosphatase activity; INVOLVED IN: response to auxin stimulus, protein kinase cascade, response to abscisic acid stimulus, negative regulation of MAP kinase activity; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Protein-tyrosine phosphatase (InterPro:IPR000387), Protein-tyrosine phosphatase, dual specificity (InterPro:IPR000340); BEST Arabidopsis thaliana protein match is: dual specificity protein phosphatase (DsPTP1) (TAIR:AT3G23610.2); Has 3142 Blast hits to 3141 proteins in 250 species: Archae - 12; Bacteria - 45; Metazoa - 1908; Fungi - 198; Plants - 147; Viruses - 170; Other Eukaryotes - 662 (source: NCBI BLink).  protein_id AT2G04550.1p  transcript_id AT2G04550.1  protein_id AT2G04550.1p  transcript_id AT2G04550.1  
At2g04550	chr2:001588538	0.0	W/1588538-1588783,1589044-1589143,1589216-1589273,1589391-1589497,1589578-1589603	AT2G04550.3  CDS  gene_syn IBR5, INDOLE-3-BUTYRIC ACID RESPONSE 5, T1O3.4, T1O3_4  gene IBR5  function Encodes a protein phosphatase that interacts with MPK12, but not with other MAP kinases. It can dephosphorylate a dually phosphorylated MPK12 in vitro and can inactivate MPK12 in vivo. ibr5 mutants have reduced sensitivity to auxin and abscisic acid.  go_component nucleus|GO:0005634|19000167|IDA  go_process protein kinase cascade|GO:0007243|19000167|IC  go_process response to auxin stimulus|GO:0009733|14630970|IMP  go_process response to abscisic acid stimulus|GO:0009737|14630970|IMP  go_process negative regulation of MAP kinase activity|GO:0043407|19000167|IMP  go_function protein tyrosine/serine/threonine phosphatase activity|GO:0008138||ISS  go_function MAP kinase phosphatase activity|GO:0033549|19000167|IDA  product IBR5 (INDOLE-3-BUTYRIC ACID RESPONSE 5); MAP kinase phosphatase/ protein tyrosine/serine/threonine phosphatase  note INDOLE-3-BUTYRIC ACID RESPONSE 5 (IBR5); FUNCTIONS IN: MAP kinase phosphatase activity, protein tyrosine/serine/threonine phosphatase activity; INVOLVED IN: response to auxin stimulus, protein kinase cascade, response to abscisic acid stimulus, negative regulation of MAP kinase activity; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Protein-tyrosine phosphatase (InterPro:IPR000387), Protein-tyrosine phosphatase, dual specificity (InterPro:IPR000340); BEST Arabidopsis thaliana protein match is: dual specificity protein phosphatase (DsPTP1) (TAIR:AT3G23610.2); Has 2739 Blast hits to 2739 proteins in 221 species: Archae - 6; Bacteria - 32; Metazoa - 1724; Fungi - 144; Plants - 114; Viruses - 161; Other Eukaryotes - 558 (source: NCBI BLink).  protein_id AT2G04550.3p  transcript_id AT2G04550.3  protein_id AT2G04550.3p  transcript_id AT2G04550.3  
At2g04560	chr2:001592438	0.0	C/1592438-1592667,1592225-1592324,1592040-1592145,1591437-1591663,1591274-1591328,1590926-1591164,1590625-1590851,1590341-1590524	AT2G04560.1  CDS  gene_syn T1O3.3, T1O3_3  go_process lipid A biosynthetic process|GO:0009245||IEA  go_component cellular_component|GO:0005575||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product transferase, transferring glycosyl groups  note transferase, transferring glycosyl groups; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: lipid A biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 19 (InterPro:IPR003835); Has 4190 Blast hits to 4190 proteins in 837 species: Archae - 0; Bacteria - 1686; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 2489 (source: NCBI BLink).  protein_id AT2G04560.1p  transcript_id AT2G04560.1  protein_id AT2G04560.1p  transcript_id AT2G04560.1  
At2g04570	chr2:001594747	0.0	W/1594747-1595115,1595337-1595826,1595936-1596129	AT2G04570.1  CDS  gene_syn T1O3.2, T1O3_2  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT2G42990.1); Has 1917 Blast hits to 1901 proteins in 192 species: Archae - 0; Bacteria - 317; Metazoa - 1; Fungi - 22; Plants - 1561; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT2G04570.1p  transcript_id AT2G04570.1  protein_id AT2G04570.1p  transcript_id AT2G04570.1  
At2g04580	chr2:001599682	0.0	C/1599682-1600833	AT2G04580.1  mRNA_TE_gene  pseudo  gene_syn T1O3.1, T1O3_1  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22440.1); similar to 52O08_2 [Brassica rapa subsp. pekinensis] (GB:AAZ67547.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)  
At2g04590	chr2:001607035	0.0	C/1607035-1607683	AT2G04590.1  mRNA_TE_gene  pseudo  gene_syn F7D11.5  note Transposable element gene, copia-like retrotransposon family, has a 2.6e-28 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At2g04600	chr2:001608076	0.0	C/1608076-1609758	AT2G04600.1  mRNA_TE_gene  pseudo  gene_syn F7D11.4, F7D11_4  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G13865.1)  
At2g04610	chr2:001609935	0.0	W/1609935-1610372	AT2G04610.1  pseudogenic_transcript  pseudo  gene_syn F7D11.3  note pseudogene, cysteine synthase, blastp match of 63% identity and 2.3e-11 P-value to GP|11559260|dbj|BAB18760.1||AB027000 beta-cyanoalanine synthase {Solanum tuberosum}  
At2g04620	chr2:001610506	0.0	C/1610506-1612902	AT2G04620.1  CDS  gene_syn F7D11.2, F7D11_2  go_component membrane|GO:0016020||IEA  go_process cation transport|GO:0006812||IEA  go_component membrane|GO:0016020||ISS  go_process cation transport|GO:0006812||ISS  go_function cation transmembrane transporter activity|GO:0008324||ISS  go_function efflux transmembrane transporter activity|GO:0015562||ISS  product cation efflux family protein  note cation efflux family protein; FUNCTIONS IN: cation transmembrane transporter activity, efflux transmembrane transporter activity; INVOLVED IN: cation transport; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: cation efflux family protein / metal tolerance protein, putative (TAIR:AT3G12100.2); Has 33552 Blast hits to 14853 proteins in 1517 species: Archae - 300; Bacteria - 10119; Metazoa - 9254; Fungi - 1543; Plants - 819; Viruses - 33; Other Eukaryotes - 11484 (source: NCBI BLink).  protein_id AT2G04620.1p  transcript_id AT2G04620.1  protein_id AT2G04620.1p  transcript_id AT2G04620.1  
At2g04622	chr2:001613965	0.0	C/1613965-1614019,1613686-1613876	AT2G04622.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03826.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G04622.1p  transcript_id AT2G04622.1  protein_id AT2G04622.1p  transcript_id AT2G04622.1  
At2g04625	chr2:001618416	0.0	C/1618416-1618728	AT2G04625.1  mRNA_TE_gene  pseudo  gene_syn F7D11.1  note Transposable element gene, pseudogene, hypothetical protein, similar to reverse transcriptase  
At2g04630	chr2:001620209	0.0	C/1620209-1620246,1619888-1619921,1619635-1619807,1619497-1619548,1619329-1619396,1619168-1619237	AT2G04630.1  CDS  gene_syn F28I8.33, F28I8_33, NRPB6B, NRPE6B  gene NRPB6B  function One of two highly similar proteins that can serve as a non-catalytic subunit of nuclear DNA-dependent RNA polymerases II and V; homologous to budding yeast RPB6 and the E. coli RNA polymerase omega subunit. Probably redundant with At5g51940.  go_process transcription, DNA-dependent|GO:0006351||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_component DNA-directed RNA polymerase II, core complex|GO:0005665|19110459|IPI  go_process transcription, DNA-dependent|GO:0006351||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product NRPB6B; DNA binding / DNA-directed RNA polymerase  note NRPB6B; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription, DNA-dependent; LOCATED IN: DNA-directed RNA polymerase II, core complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase subunit, RPB6/omega (InterPro:IPR012293), RNA polymerase Rpb6 (InterPro:IPR006110), DNA-directed RNA polymerase, 14 to 18 kDa subunit (InterPro:IPR006111); BEST Arabidopsis thaliana protein match is: NRPB6A; DNA binding / DNA-directed RNA polymerase (TAIR:AT5G51940.1); Has 682 Blast hits to 682 proteins in 220 species: Archae - 134; Bacteria - 0; Metazoa - 85; Fungi - 129; Plants - 46; Viruses - 11; Other Eukaryotes - 277 (source: NCBI BLink).  protein_id AT2G04630.1p  transcript_id AT2G04630.1  protein_id AT2G04630.1p  transcript_id AT2G04630.1  
At2g04650	chr2:001624435	0.0	C/1624435-1624486,1624245-1624342,1623832-1623932,1623672-1623750,1623518-1623578,1623393-1623439,1623212-1623304,1623036-1623126,1622765-1622906,1622543-1622693,1622359-1622451,1622158-1622269,1621986-1622086	AT2G04650.1  CDS  gene_syn F28I8.31, F28I8_31  go_process biosynthetic process|GO:0009058||IEA  go_function transferase activity|GO:0016740||IEA  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_component cellular_component|GO:0005575||ND  go_process biosynthetic process|GO:0009058||ISS  go_function nucleotidyltransferase activity|GO:0016779||ISS  product ADP-glucose pyrophosphorylase family protein  note ADP-glucose pyrophosphorylase family protein; FUNCTIONS IN: transferase activity, nucleotidyltransferase activity; INVOLVED IN: biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), Bacterial transferase hexapeptide repeat (InterPro:IPR001451), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: ADP-glucose pyrophosphorylase family protein (TAIR:AT1G74910.2); Has 7354 Blast hits to 7349 proteins in 1328 species: Archae - 421; Bacteria - 4278; Metazoa - 363; Fungi - 219; Plants - 282; Viruses - 0; Other Eukaryotes - 1791 (source: NCBI BLink).  protein_id AT2G04650.1p  transcript_id AT2G04650.1  protein_id AT2G04650.1p  transcript_id AT2G04650.1  
At2g04660	chr2:001624933	0.0	W/1624933-1625163,1625326-1625397,1625492-1625723,1625857-1626137,1626239-1626310,1626397-1626641,1626761-1627177,1627264-1627465,1627565-1627667,1627762-1627844,1627956-1628075,1628182-1628270,1628341-1628422,1628503-1628679,1628756-1628824,1628917-1629039	AT2G04660.1  CDS  gene_syn ANAPHASE-PROMOTING COMPLEX/CYCLOSOME 2, APC2, F28I8.30, F28I8_30  gene APC2  function a highly conserved ubiquitin-protein ligase involved in cell cycle regulation  go_function ubiquitin protein ligase binding|GO:0031625||IEA  go_component ubiquitin ligase complex|GO:0000151|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product APC2; ubiquitin protein ligase binding / ubiquitin-protein ligase  note APC2; FUNCTIONS IN: ubiquitin-protein ligase activity, ubiquitin protein ligase binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cullin homology (InterPro:IPR016158), Anaphase promoting complex subunit 2 (InterPro:IPR014786), Cullin, N-terminal region (InterPro:IPR001373); BEST Arabidopsis thaliana protein match is: CUL4 (CULLIN4); protein binding / ubiquitin-protein ligase (TAIR:AT5G46210.1); Has 1015 Blast hits to 1009 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 472; Fungi - 301; Plants - 141; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT2G04660.1p  transcript_id AT2G04660.1  protein_id AT2G04660.1p  transcript_id AT2G04660.1  
At2g04670	chr2:001631697	0.0	C/1631697-1636084	AT2G04670.1  mRNA_TE_gene  pseudo  gene_syn F28I8.29, F28I8_29  note Transposable element gene, gypsy-like retrotransposon family, has a 1.2e-313 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At2g04675	chr2:001637643	0.0	C/1637643-1637846	AT2G04675.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, flower, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G04675.1p  transcript_id AT2G04675.1  protein_id AT2G04675.1p  transcript_id AT2G04675.1  
At2g04680	chr2:001640188	0.0	W/1640188-1642161	AT2G04680.1  CDS  gene_syn F28I8.28, F28I8_28  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT5G37620.1); Has 1365 Blast hits to 514 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 38; Fungi - 5; Plants - 1305; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT2G04680.1p  transcript_id AT2G04680.1  protein_id AT2G04680.1p  transcript_id AT2G04680.1  
At2g04690	chr2:001644628	0.0	W/1644628-1644803,1645355-1645390,1645473-1645671,1645753-1645831,1645914-1646031,1646155-1646179	AT2G04690.1  CDS  gene_syn F28I8.27, F28I8_27  go_component vacuole|GO:0005773|15539469|IDA  go_function FMN binding|GO:0010181||IEA  go_process biological_process|GO:0008150||ND  product cellular repressor of E1A-stimulated genes (CREG) family  note cellular repressor of E1A-stimulated genes (CREG) family; FUNCTIONS IN: FMN binding; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular repressor of E1A-stimulated genes (CREG) (InterPro:IPR014631), FMN-binding split barrel (InterPro:IPR012349), FMN-binding split barrel, related (InterPro:IPR009002); Has 336 Blast hits to 336 proteins in 88 species: Archae - 0; Bacteria - 72; Metazoa - 145; Fungi - 2; Plants - 50; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT2G04690.1p  transcript_id AT2G04690.1  protein_id AT2G04690.1p  transcript_id AT2G04690.1  
At2g04690	chr2:001644628	0.0	W/1644628-1644803,1645355-1645390,1645473-1645671,1645753-1645831,1645914-1646035	AT2G04690.2  CDS  gene_syn F28I8.27, F28I8_27  go_function FMN binding|GO:0010181||IEA  go_process biological_process|GO:0008150||ND  product cellular repressor of E1A-stimulated genes (CREG) family  note cellular repressor of E1A-stimulated genes (CREG) family; FUNCTIONS IN: FMN binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular repressor of E1A-stimulated genes (CREG) (InterPro:IPR014631), FMN-binding split barrel (InterPro:IPR012349), FMN-binding split barrel, related (InterPro:IPR009002); Has 322 Blast hits to 322 proteins in 82 species: Archae - 0; Bacteria - 60; Metazoa - 145; Fungi - 2; Plants - 48; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT2G04690.2p  transcript_id AT2G04690.2  protein_id AT2G04690.2p  transcript_id AT2G04690.2  
At2g04700	chr2:001646961	0.0	W/1646961-1647060,1647149-1647261,1647430-1647479,1647553-1647624,1648092-1648152,1648301-1648345	AT2G04700.1  CDS  gene_syn F28I8.26, F28I8_26  go_component chloroplast|GO:0009507|18431481|IDA  go_function ferredoxin reductase activity|GO:0008937||IEA  go_function ferredoxin:thioredoxin reductase activity|GO:0030385||ISS  product ferredoxin thioredoxin reductase catalytic beta chain family protein  note ferredoxin thioredoxin reductase catalytic beta chain family protein; FUNCTIONS IN: ferredoxin:thioredoxin reductase activity, ferredoxin reductase activity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin thioredoxin reductase, beta subunit (InterPro:IPR004209); Has 204 Blast hits to 204 proteins in 84 species: Archae - 14; Bacteria - 106; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT2G04700.1p  transcript_id AT2G04700.1  protein_id AT2G04700.1p  transcript_id AT2G04700.1  
At2g04710	chr2:001650512	0.0	C/1650512-1651756	AT2G04710.1  mRNA_TE_gene  pseudo  gene_syn F28I8.25, F28I8_25  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 1.6e-29 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays)  
At2g04720	chr2:001653007	0.0	C/1653007-1654308	AT2G04720.1  pseudogenic_transcript  pseudo  gene_syn F28I8.24, F28I8_24  note pseudogene, GTP-binding protein -related, similar to GTP-binding protein GI:6624302 from (Carica papaya); blastp match of 60% identity and 5.0e-31 P-value to GP|6624302|dbj|BAA88497.1||AB035919 small GTP-binding protein {Carica papaya}  
At2g04730	chr2:001654500	0.0	C/1654500-1655699	AT2G04730.1  pseudogenic_transcript  pseudo  gene_syn F28I8.23, F28I8_23  note pseudogene, F-box protein-related, contains TIGRFAM TIGR01640 : F-box protein interaction domain; similar to F-box protein family, AtFBX9 (GI:20197985) (Arabidopsis thaliana)  
At2g04740	chr2:001657137	0.0	W/1657137-1657614,1657985-1658720,1658810-1658846,1658926-1659059,1659212-1659563	AT2G04740.1  CDS  gene_syn F28I8.22, F28I8_22  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), Ankyrin (InterPro:IPR002110); Has 5441 Blast hits to 4453 proteins in 201 species: Archae - 8; Bacteria - 129; Metazoa - 4247; Fungi - 128; Plants - 555; Viruses - 26; Other Eukaryotes - 348 (source: NCBI BLink).  protein_id AT2G04740.1p  transcript_id AT2G04740.1  protein_id AT2G04740.1p  transcript_id AT2G04740.1  
At2g04750	chr2:001662662	0.0	C/1662662-1662748,1662420-1662590,1662113-1662333,1661847-1662018,1661746-1661784,1661607-1661675,1661408-1661524,1661115-1661326,1660873-1661034,1660594-1660793,1660357-1660514,1660179-1660275,1659999-1660090,1659762-1659923	AT2G04750.1  CDS  gene_syn F28I8.21, F28I8_21  go_component cell wall|GO:0005618|15593128|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product fimbrin-like protein, putative  note fimbrin-like protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715); BEST Arabidopsis thaliana protein match is: FIM2 (FIMBRIN-LIKE PROTEIN 2); actin binding (TAIR:AT5G35700.1); Has 3454 Blast hits to 2165 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 2907; Fungi - 221; Plants - 74; Viruses - 0; Other Eukaryotes - 252 (source: NCBI BLink).  protein_id AT2G04750.1p  transcript_id AT2G04750.1  protein_id AT2G04750.1p  transcript_id AT2G04750.1  
At2g04760	chr2:001665780	0.0	W/1665780-1668389	AT2G04760.1  mRNA_TE_gene  pseudo  gene_syn F28I8.20, F28I8_20  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.8e-38 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At2g04770	chr2:001671116	0.0	W/1671116-1672075	AT2G04770.1  mRNA_TE_gene  pseudo  gene_syn F28I8.19, F28I8_19  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 6.0e-20 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At2g04780	chr2:001677488	0.0	W/1677488-1678252	AT2G04780.1  CDS  gene_syn F28I8.18, F28I8_18, FASCICLIN-LIKE ARABINOOGALACTAN 7, FLA7  gene FLA7  function fasciclin-like arabinogalactan-protein 7 (Fla7)  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component anchored to plasma membrane|GO:0046658|12805588|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  product FLA7 (FASCICLIN-LIKE ARABINOOGALACTAN 7)  note FASCICLIN-LIKE ARABINOOGALACTAN 7 (FLA7); LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FLA12 (TAIR:AT5G60490.1); Has 469 Blast hits to 467 proteins in 59 species: Archae - 4; Bacteria - 45; Metazoa - 0; Fungi - 0; Plants - 410; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT2G04780.1p  transcript_id AT2G04780.1  protein_id AT2G04780.1p  transcript_id AT2G04780.1  
At2g04780	chr2:001677488	0.0	W/1677488-1678252	AT2G04780.2  CDS  gene_syn F28I8.18, F28I8_18, FASCICLIN-LIKE ARABINOOGALACTAN 7, FLA7  gene FLA7  function fasciclin-like arabinogalactan-protein 7 (Fla7)  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component anchored to plasma membrane|GO:0046658|12805588|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  product FLA7 (FASCICLIN-LIKE ARABINOOGALACTAN 7)  note FASCICLIN-LIKE ARABINOOGALACTAN 7 (FLA7); LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FLA12 (TAIR:AT5G60490.1); Has 469 Blast hits to 467 proteins in 59 species: Archae - 4; Bacteria - 45; Metazoa - 0; Fungi - 0; Plants - 410; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT2G04780.2p  transcript_id AT2G04780.2  protein_id AT2G04780.2p  transcript_id AT2G04780.2  
At2g04790	chr2:001679528	0.0	W/1679528-1679719,1679805-1679886,1680015-1680176,1680269-1680327	AT2G04790.2  CDS  gene_syn F28I8.17, F28I8_17  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; Has 24 Blast hits to 24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G04790.2p  transcript_id AT2G04790.2  protein_id AT2G04790.2p  transcript_id AT2G04790.2  
At2g04790	chr2:001679528	0.0	W/1679528-1679719,1679805-1679886,1680015-1680199	AT2G04790.1  CDS  gene_syn F28I8.17, F28I8_17  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; Has 24 Blast hits to 24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G04790.1p  transcript_id AT2G04790.1  protein_id AT2G04790.1p  transcript_id AT2G04790.1  
At2g04790	chr2:001679528	0.0	W/1679528-1679719,1679805-1679909,1680015-1680020	AT2G04790.3  CDS  gene_syn F28I8.17, F28I8_17  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G04790.3p  transcript_id AT2G04790.3  protein_id AT2G04790.3p  transcript_id AT2G04790.3  
At2g04790	chr2:001679528	0.0	W/1679528-1679719,1679805-1679909,1680015-1680020	AT2G04790.4  CDS  gene_syn F28I8.17, F28I8_17  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G04790.4p  transcript_id AT2G04790.4  protein_id AT2G04790.4p  transcript_id AT2G04790.4  
At2g04795	chr2:001683027	0.0	W/1683027-1683314	AT2G04795.1  CDS  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35732.1); Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G04795.1p  transcript_id AT2G04795.1  protein_id AT2G04795.1p  transcript_id AT2G04795.1  
At2g04800	chr2:001687366	0.0	C/1687366-1687602	AT2G04800.1  CDS  gene_syn F28I8.16, F28I8_16  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G04800.1p  transcript_id AT2G04800.1  protein_id AT2G04800.1p  transcript_id AT2G04800.1  
At2g04800	chr2:001687366	0.0	C/1687366-1687602	AT2G04800.2  CDS  gene_syn F28I8.16, F28I8_16  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G04800.2p  transcript_id AT2G04800.2  protein_id AT2G04800.2p  transcript_id AT2G04800.2  
At2g04810	chr2:001688773	0.0	W/1688773-1689966	AT2G04810.1  CDS  gene_syn F28I8.15, F28I8_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G04840.1); Has 184 Blast hits to 177 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 184; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G04810.1p  transcript_id AT2G04810.1  protein_id AT2G04810.1p  transcript_id AT2G04810.1  
At2g04820	chr2:001693577	0.0	C/1693577-1695310	AT2G04820.1  mRNA_TE_gene  pseudo  gene_syn F28I8.14, F28I8_14  note Transposable element gene, copia-like retrotransposon family, has a 2.8e-214 P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At2g04830	chr2:001695431	0.0	W/1695431-1695733	AT2G04830.1  CDS  gene_syn F28I8.13, F28I8_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G04840.1); Has 30 Blast hits to 30 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G04830.1p  transcript_id AT2G04830.1  protein_id AT2G04830.1p  transcript_id AT2G04830.1  
At2g04840	chr2:001697009	0.0	W/1697009-1697259,1697322-1698240	AT2G04840.1  CDS  gene_syn F28I8.12, F28I8_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G04810.1); Has 129 Blast hits to 129 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G04840.1p  transcript_id AT2G04840.1  protein_id AT2G04840.1p  transcript_id AT2G04840.1  
At2g04842	chr2:001701017	0.0	C/1701017-1701271,1700511-1700657,1700288-1700435,1699932-1700185,1699476-1699853,1699083-1699391,1698809-1699009,1698466-1698726	AT2G04842.1  CDS  gene_syn EMB2761, EMBRYO DEFECTIVE 2761  gene EMB2761  function Encodes a dual localized threonyl-tRNA synthetase found both in the mitochondrion and the chloroplast. Plants mutated in this gene terminate as embryos in the globular stage.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function threonine-tRNA ligase activity|GO:0004829||IEA  go_function ATP binding|GO:0005524||IEA  go_function ligase activity, forming aminoacyl-tRNA and related compounds|GO:0016876||IEA  go_component mitochondrion|GO:0005739|16251277|IDA  go_component chloroplast|GO:0009507|16251277|IDA  go_process threonyl-tRNA aminoacylation|GO:0006435||ISS  go_process embryonic development ending in seed dormancy|GO:0009793|16297076|IMP  go_function threonine-tRNA ligase activity|GO:0004829||ISS  product EMB2761 (EMBRYO DEFECTIVE 2761); ATP binding / aminoacyl-tRNA ligase/ ligase, forming aminoacyl-tRNA and related compounds / nucleotide binding / threonine-tRNA ligase  note EMBRYO DEFECTIVE 2761 (EMB2761); FUNCTIONS IN: ligase activity, forming aminoacyl-tRNA and related compounds, nucleotide binding, aminoacyl-tRNA ligase activity, threonine-tRNA ligase activity, ATP binding; INVOLVED IN: embryonic development ending in seed dormancy, threonyl-tRNA aminoacylation; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast; CONTAINS InterPro DOMAIN/s: Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain (InterPro:IPR018163), Threonyl-tRNA synthetase, class IIa (InterPro:IPR002320), Aminoacyl-tRNA synthetase, class II (G, H, P and S), conserved region (InterPro:IPR002314), Aminoacyl-tRNA synthetase, class II, conserved region (InterPro:IPR006195), Threonyl/alanyl tRNA synthetase, SAD (InterPro:IPR012947), Anticodon-binding (InterPro:IPR004154), Threonyl-tRNA synthetase, class IIa, conserved region (InterPro:IPR018158); BEST Arabidopsis thaliana protein match is: threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS) (TAIR:AT5G26830.1); Has 12608 Blast hits to 12554 proteins in 1662 species: Archae - 392; Bacteria - 5344; Metazoa - 335; Fungi - 233; Plants - 80; Viruses - 0; Other Eukaryotes - 6224 (source: NCBI BLink).  protein_id AT2G04842.1p  transcript_id AT2G04842.1  protein_id AT2G04842.1p  transcript_id AT2G04842.1  
At2g04845	chr2:001703801	0.0	C/1703801-1703993,1703372-1703443,1702935-1703022,1702663-1702824,1702558-1702596,1702451-1702472	AT2G04845.2  CDS  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product GCN5-related N-acetyltransferase (GNAT) family protein  note GCN5-related N-acetyltransferase (GNAT) family protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 264 Blast hits to 255 proteins in 120 species: Archae - 0; Bacteria - 49; Metazoa - 107; Fungi - 49; Plants - 15; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT2G04845.2p  transcript_id AT2G04845.2  protein_id AT2G04845.2p  transcript_id AT2G04845.2  
At2g04845	chr2:001703801	0.0	C/1703801-1703993,1703372-1703443,1702935-1703022,1702692-1702824,1702558-1702596,1702341-1702472	AT2G04845.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product GCN5-related N-acetyltransferase (GNAT) family protein  note GCN5-related N-acetyltransferase (GNAT) family protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 443 Blast hits to 432 proteins in 192 species: Archae - 11; Bacteria - 190; Metazoa - 107; Fungi - 53; Plants - 15; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT2G04845.1p  transcript_id AT2G04845.1  protein_id AT2G04845.1p  transcript_id AT2G04845.1  
At2g04850	chr2:001704298	0.0	W/1704298-1704901,1704998-1705608	AT2G04850.1  CDS  gene_syn F28I8.9, F28I8_9  go_component membrane|GO:0016020|10080694|ISS  product auxin-responsive protein-related  note auxin-responsive protein-related; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP037471 (InterPro:IPR017214), Protein of unknown function DUF568, DOMON-like (InterPro:IPR007613), DOMON related (InterPro:IPR005018), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT3G25290.2); Has 374 Blast hits to 374 proteins in 74 species: Archae - 0; Bacteria - 2; Metazoa - 72; Fungi - 47; Plants - 246; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT2G04850.1p  transcript_id AT2G04850.1  protein_id AT2G04850.1p  transcript_id AT2G04850.1  
At2g04852	chr2:001705148	0.0	C/1705148-1706465	AT2G04852.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G04850  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G04852.1  
At2g04860	chr2:001706787	0.0	C/1706787-1708535	AT2G04860.1  CDS  gene_syn F28I8.8, F28I8_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G21300.1); Has 14514 Blast hits to 4517 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 54; Fungi - 37; Plants - 14212; Viruses - 0; Other Eukaryotes - 211 (source: NCBI BLink).  protein_id AT2G04860.1p  transcript_id AT2G04860.1  protein_id AT2G04860.1p  transcript_id AT2G04860.1  
At2g04864	chr2:001711596	0.0	W/1711596-1711829	AT2G04864.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G04864.1p  transcript_id AT2G04864.1  protein_id AT2G04864.1p  transcript_id AT2G04864.1  
At2g04865	chr2:001712149	0.0	W/1712149-1712238,1712360-1713004,1713147-1713314,1713405-1713797,1713892-1714599	AT2G04865.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25010.1); Has 712 Blast hits to 691 proteins in 75 species: Archae - 0; Bacteria - 33; Metazoa - 87; Fungi - 11; Plants - 497; Viruses - 14; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT2G04865.1p  transcript_id AT2G04865.1  protein_id AT2G04865.1p  transcript_id AT2G04865.1  
At2g04870	chr2:001716168	0.0	C/1716168-1716386	AT2G04870.1  CDS  gene_syn F28I8.6, F28I8_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 14 Blast hits to 14 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT2G04870.1p  transcript_id AT2G04870.1  protein_id AT2G04870.1p  transcript_id AT2G04870.1  
At2g04880	chr2:001718557	0.0	W/1718557-1719127,1719200-1719380,1719484-1719639,1719736-1720219	AT2G04880.2  CDS  gene_syn ATWRKY1, F1O13.1, F1O13_1, WRKY1, ZAP1, ZINC-DEPENDENT ACTIVATOR PROTEIN-1  gene ZAP1  function Encodes WRKY1, a member of the WRKY transcription factors in plants involved in disease resistance, abiotic stress, senescence as well as in some developmental processes. WRKY1 is involved in the salicylic acid signaling pathway. The crystal structure of the WRKY1 C-terminal domain revealed a zinc-binding site and identified the DNA-binding residues of WRKY1.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_process salicylic acid mediated signaling pathway|GO:0009863|17264121|IEP  go_process positive regulation of transcription|GO:0045941|8972846|IDA  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|17264121|IDA  go_function transcription factor activity|GO:0003700||ISS  go_function zinc ion binding|GO:0008270|17264121|IDA  go_function transcription activator activity|GO:0016563|8972846|IDA  go_function transcription activator activity|GO:0016563|8972846|TAS  product ZAP1 (ZINC-DEPENDENT ACTIVATOR PROTEIN-1); transcription activator/ transcription factor/ zinc ion binding  note ZINC-DEPENDENT ACTIVATOR PROTEIN-1 (ZAP1); FUNCTIONS IN: transcription factor activity, transcription activator activity, zinc ion binding; INVOLVED IN: positive regulation of transcription, salicylic acid mediated signaling pathway, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY20; transcription factor (TAIR:AT4G26640.2); Has 3331 Blast hits to 1766 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 2; Plants - 3290; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT2G04880.2p  transcript_id AT2G04880.2  protein_id AT2G04880.2p  transcript_id AT2G04880.2  
At2g04880	chr2:001718557	0.0	W/1718557-1719380,1719484-1719639,1719736-1720219	AT2G04880.1  CDS  gene_syn ATWRKY1, F1O13.1, F1O13_1, WRKY1, ZAP1, ZINC-DEPENDENT ACTIVATOR PROTEIN-1  gene ZAP1  function Encodes WRKY1, a member of the WRKY transcription factors in plants involved in disease resistance, abiotic stress, senescence as well as in some developmental processes. WRKY1 is involved in the salicylic acid signaling pathway. The crystal structure of the WRKY1 C-terminal domain revealed a zinc-binding site and identified the DNA-binding residues of WRKY1.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_process salicylic acid mediated signaling pathway|GO:0009863|17264121|IEP  go_process positive regulation of transcription|GO:0045941|8972846|IDA  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|17264121|IDA  go_function transcription factor activity|GO:0003700||ISS  go_function zinc ion binding|GO:0008270|17264121|IDA  go_function transcription activator activity|GO:0016563|8972846|IDA  go_function transcription activator activity|GO:0016563|8972846|TAS  product ZAP1 (ZINC-DEPENDENT ACTIVATOR PROTEIN-1); transcription activator/ transcription factor/ zinc ion binding  note ZINC-DEPENDENT ACTIVATOR PROTEIN-1 (ZAP1); FUNCTIONS IN: transcription factor activity, transcription activator activity, zinc ion binding; INVOLVED IN: positive regulation of transcription, salicylic acid mediated signaling pathway, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY20; transcription factor (TAIR:AT4G26640.2); Has 3445 Blast hits to 1765 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 3405; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT2G04880.1p  transcript_id AT2G04880.1  protein_id AT2G04880.1p  transcript_id AT2G04880.1  
At2g04890	chr2:001720575	0.0	C/1720575-1721816	AT2G04890.1  CDS  gene_syn F1O13.2, F1O13_2, SCARECROW-LIKE 21, SCL21  gene SCL21  function Encodes a scarecrow-like protein (SCL21). Member of GRAS gene family.  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product SCL21 (SCARECROW-LIKE 21); transcription factor  note SCARECROW-LIKE 21 (SCL21); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: PAT1 (phytochrome a signal transduction 1); signal transducer/ transcription factor (TAIR:AT5G48150.2); Has 1374 Blast hits to 1353 proteins in 189 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 1370; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G04890.1p  transcript_id AT2G04890.1  protein_id AT2G04890.1p  transcript_id AT2G04890.1  
At2g04900	chr2:001722500	0.0	W/1722500-1722590,1722670-1722740,1722825-1722905,1722990-1723029,1723507-1723520	AT2G04900.2  CDS  gene_syn F1O13.3  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF423 (InterPro:IPR006696); Has 230 Blast hits to 230 proteins in 101 species: Archae - 0; Bacteria - 103; Metazoa - 59; Fungi - 11; Plants - 40; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT2G04900.2p  transcript_id AT2G04900.2  protein_id AT2G04900.2p  transcript_id AT2G04900.2  
At2g04900	chr2:001722500	0.0	W/1722500-1722590,1722670-1722740,1722825-1722905,1722990-1723033,1723507-1723606	AT2G04900.1  CDS  gene_syn F1O13.3  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF423 (InterPro:IPR006696); Has 1072 Blast hits to 1072 proteins in 490 species: Archae - 0; Bacteria - 798; Metazoa - 91; Fungi - 13; Plants - 40; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink).  protein_id AT2G04900.1p  transcript_id AT2G04900.1  protein_id AT2G04900.1p  transcript_id AT2G04900.1  
At2g04910	chr2:001723980	0.0	C/1723980-1724354	AT2G04910.1  CDS  gene_syn F1O13.4, F1O13_4  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycosyl hydrolase family protein 17  note glycosyl hydrolase family protein 17; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family protein 17 (TAIR:AT5G35740.1); Has 677 Blast hits to 641 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 677; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G04910.1p  transcript_id AT2G04910.1  protein_id AT2G04910.1p  transcript_id AT2G04910.1  
At2g04910	chr2:001724078	0.0	C/1724078-1724354,1723939-1723976	AT2G04910.2  CDS  gene_syn F1O13.4, F1O13_4  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycosyl hydrolase family protein 17  note glycosyl hydrolase family protein 17; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family protein 17 (TAIR:AT5G35740.1).  protein_id AT2G04910.2p  transcript_id AT2G04910.2  protein_id AT2G04910.2p  transcript_id AT2G04910.2  
At2g04920	chr2:001726138	0.0	W/1726138-1727268	AT2G04920.1  CDS  gene_syn F1O13.5, F1O13_5  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product F-box family protein (FBX9)  note F-box family protein (FBX9); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G22720.1); Has 1004 Blast hits to 982 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1002; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G04920.1p  transcript_id AT2G04920.1  protein_id AT2G04920.1p  transcript_id AT2G04920.1  
At2g04925	chr2:001730093	0.0	C/1730093-1730141,1729765-1729988	AT2G04925.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04034.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G04925.1p  transcript_id AT2G04925.1  protein_id AT2G04925.1p  transcript_id AT2G04925.1  
At2g04930	chr2:001733638	0.0	C/1733638-1734471	AT2G04930.1  CDS  gene_syn F1O13.6, F1O13_6  go_component nucleus|GO:0005634||IEA  go_function phosphoprotein phosphatase activity|GO:0004721||IEA  go_process biological_process|GO:0008150||ND  product NLI interacting factor (NIF) family protein  note NLI interacting factor (NIF) family protein; FUNCTIONS IN: phosphoprotein phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: FCP1-like phosphatase, phosphatase domain (InterPro:IPR011947), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: phosphoprotein phosphatase (TAIR:AT3G19595.1); Has 943 Blast hits to 941 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 323; Fungi - 139; Plants - 137; Viruses - 0; Other Eukaryotes - 344 (source: NCBI BLink).  protein_id AT2G04930.1p  transcript_id AT2G04930.1  protein_id AT2G04930.1p  transcript_id AT2G04930.1  
At2g04940	chr2:001740144	0.0	C/1740144-1740254,1739594-1739965,1739207-1739293,1738973-1739014,1738787-1738831,1737992-1738057,1737842-1737898,1737690-1737751,1737317-1737437,1737039-1737116,1736831-1736937,1736671-1736701	AT2G04940.1  CDS  gene_syn F1O13.7, F1O13_7  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product scramblase-related  note scramblase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Scramblase (InterPro:IPR005552); Has 321 Blast hits to 312 proteins in 92 species: Archae - 0; Bacteria - 10; Metazoa - 206; Fungi - 72; Plants - 23; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT2G04940.1p  transcript_id AT2G04940.1  protein_id AT2G04940.1p  transcript_id AT2G04940.1  
At2g04950	chr2:001743182	0.0	W/1743182-1745150	AT2G04950.1  mRNA_TE_gene  pseudo  gene_syn F1O13.8, F1O13_8  note Transposable element gene, Mutator-like transposase family, has a 3.0e-82 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g04970	chr2:001745973	0.0	C/1745973-1750207	AT2G04970.1  mRNA_TE_gene  pseudo  gene_syn F1O13.10, F1O13_10  note Transposable element gene, similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT1G32830.1); similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT3G30450.1); similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT2G14140.1); similar to Agenet domain containing protein [Brassica oleracea] (GB:ABD65016.1); contains InterPro domain Protein of unknown function DUF1299; (InterPro:IPR010725); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623)  
At2g04980	chr2:001751964	0.0	C/1751964-1756568	AT2G04980.1  mRNA_TE_gene  pseudo  gene_syn F1O13.11, F1O13_11  note Transposable element gene, pseudogene, Ulp1 protease family, similar to At1g32840, At4g04010, At2g06430, At2g15140, At2g14130, At3g44500, At2g15190, At3g47260, At5g34900, At3g29210, At2g02210, At3g32900  
At2g04990	chr2:001758936	0.0	W/1758936-1761353	AT2G04990.1  mRNA_TE_gene  pseudo  gene_syn F1O13.12, F1O13_12  note Transposable element gene, pseudogene, hypothetical protein, contains Pfam profile PF03384: Drosophila protein of unknown function, DUF287  
At2g05000	chr2:001761804	0.0	C/1761804-1762378	AT2G05000.1  mRNA_TE_gene  pseudo  gene_syn F1O13.13, F1O13_13  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G47320.1)  
At2g05010	chr2:001763645	0.0	C/1763645-1765840	AT2G05010.1  mRNA_TE_gene  pseudo  gene_syn F1O13.14, F1O13_14  note Transposable element gene, Mutator-like transposase family, has a 3.6e-93 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g05020	chr2:001769699	0.0	W/1769699-1772524	AT2G05020.1  mRNA_TE_gene  pseudo  gene_syn F1O13.15, F1O13_15  note Transposable element gene, pseudogene, similar to putative transposable element, blastp match of 61% identity and 9.4e-140 P-value to GP|13122426|dbj|BAB32907.1||AP003047 putative transposable element {Oryza sativa (japonica cultivar-group)}  
At2g05025	chr2:001773259	0.0	W/1773259-1774761	AT2G05025.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g05030	chr2:001781886	0.0	W/1781886-1782503	AT2G05030.1  mRNA_TE_gene  pseudo  gene_syn F1O13.16, F1O13_16  note Transposable element gene, contains domain GAG/POL/ENV POLYPROTEIN (PTHR10178); contains domain ENV POLYPROTEIN (PTHR10178:SF23)  
At2g05040	chr2:001783119	0.0	W/1783119-1786463	AT2G05040.1  mRNA_TE_gene  pseudo  gene_syn F1O13.17  note Transposable element gene, gypsy-like retrotransposon family, has a 6.6e-200 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At2g05050	chr2:001794035	0.0	W/1794035-1794085,1794384-1794509,1794665-1795069	AT2G05050.1  CDS  gene_syn F1O13.18  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product catalytic  note catalytic; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C, N-terminal (InterPro:IPR014045), Protein phosphatase 2C (InterPro:IPR015655); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT4G08260.1).  protein_id AT2G05050.1p  transcript_id AT2G05050.1  protein_id AT2G05050.1p  transcript_id AT2G05050.1  
At2g05060	chr2:001798155	0.0	W/1798155-1799102	AT2G05060.1  CDS  gene_syn F1O13.19, F1O13_19  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G41920.1); Has 82583 Blast hits to 81853 proteins in 2389 species: Archae - 71; Bacteria - 7095; Metazoa - 35262; Fungi - 7676; Plants - 16455; Viruses - 434; Other Eukaryotes - 15590 (source: NCBI BLink).  protein_id AT2G05060.1p  transcript_id AT2G05060.1  protein_id AT2G05060.1p  transcript_id AT2G05060.1  
At2g05070	chr2:001800184	0.0	C/1800184-1800329,1799436-1800087	AT2G05070.1  CDS  gene_syn F1O13.20, F1O13_20, LHCB2, LHCB2.2, LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, PHOTOSYSTEM II LIGHT HARVESTING COMPLEX GENE 2.2  gene LHCB2.2  function Encodes Lhcb2.2. Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_process photosynthesis, light harvesting|GO:0009765||IEA  go_component plastoglobule|GO:0010287|16414959|IDA  go_component light-harvesting complex|GO:0030076||ISS  go_process photosynthesis|GO:0015979||ISS  go_function chlorophyll binding|GO:0016168||ISS  product LHCB2.2; chlorophyll binding  note LHCB2.2; FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: guard cell, juvenile leaf, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: LHCB2.1; chlorophyll binding (TAIR:AT2G05100.1); Has 1765 Blast hits to 1704 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1535; Viruses - 0; Other Eukaryotes - 228 (source: NCBI BLink).  protein_id AT2G05070.1p  transcript_id AT2G05070.1  protein_id AT2G05070.1p  transcript_id AT2G05070.1  
At2g05080	chr2:001805751	0.0	C/1805751-1809975	AT2G05080.1  mRNA_TE_gene  pseudo  gene_syn F1O13.21, F1O13_21  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13250.1); similar to ATP binding / helicase [Arabidopsis thaliana] (TAIR:AT5G37110.1); similar to AT hook motif-containing protein-related [Arabidopsis thaliana] (TAIR:AT3G42100.1); similar to hypothetical protein 27.t00039 [Brassica oleracea] (GB:ABD65060.1); similar to hypothetical protein 31.t00030 [Brassica oleracea] (GB:ABD65117.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE80108.1); contains InterPro domain Protein of unknown function DUF889, eukaryote; (InterPro:IPR010285)  
At2g05082	chr2:001812134	0.0	C/1812134-1813300	AT2G05082.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to replication protein-related [Arabidopsis thaliana] (TAIR:AT3G13260.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At2g05084	chr2:001814327	0.0	C/1814327-1815487	AT2G05084.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to replication protein-related [Arabidopsis thaliana] (TAIR:AT1G35950.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At2g05087	chr2:001816326	0.0	C/1816326-1817535	AT2G05087.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to replication protein-related [Arabidopsis thaliana] (TAIR:AT3G42410.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At2g05090	chr2:001818142	0.0	C/1818142-1820701	AT2G05090.1  mRNA_TE_gene  pseudo  gene_syn F1O13.22, F1O13_22  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G37080.1); similar to hypothetical protein 31.t00031 [Brassica oleracea] (GB:ABD65118.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At2g05100	chr2:001824186	0.0	C/1824186-1824331,1823449-1824100	AT2G05100.1  CDS  gene_syn F15L11.2, F15L11_2, LHCB2, LHCB2.1, LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, PHOTOSYSTEM II LIGHT HARVESTING COMPLEX GENE 2.1  gene LHCB2.1  function Lhcb2.1 protein encoding a subunit of the light harvesting complex II. Member of a gene family with high degree of sequence similarity. Initially LHCB2.3 was considered as a separate gene but appears to be an allele of LHCB2.1.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component plastoglobule|GO:0010287|16461379|IDA  go_component light-harvesting complex|GO:0030076||ISS  go_process response to blue light|GO:0009637|18820083|IEP  go_process response to salt stress|GO:0009651|11351099|IEP  go_process response to red light|GO:0010114|18820083|IEP  go_process response to far red light|GO:0010218|18820083|IEP  go_process photosynthesis|GO:0015979||ISS  go_function chlorophyll binding|GO:0016168||ISS  product LHCB2.1; chlorophyll binding  note LHCB2.1; FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to salt stress, response to blue light, response to red light, response to far red light, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: 12 plant structures; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: LHCB2.2; chlorophyll binding (TAIR:AT2G05070.1); Has 1764 Blast hits to 1704 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1534; Viruses - 0; Other Eukaryotes - 228 (source: NCBI BLink).  protein_id AT2G05100.1p  transcript_id AT2G05100.1  protein_id AT2G05100.1p  transcript_id AT2G05100.1  
At2g05110	chr2:001828028	0.0	C/1828028-1833219	AT2G05110.1  mRNA_TE_gene  pseudo  gene_syn F16J10.11  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.6e-51 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At2g05115	chr2:001834466	0.0	C/1834466-1835922	AT2G05115.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At2g05117	chr2:001838945	0.0	C/1838945-1839014,1838592-1838794	AT2G05117.1  CDS  gene_syn SCR-Like 9, SCRL9  gene SCRL9  function Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).  go_component endomembrane system|GO:0012505||IEA  product SCRL9 (SCR-Like 9)  note SCR-Like 9 (SCRL9); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: SCRL10 (SCR-Like 10) (TAIR:AT4G15735.1); Has 22 Blast hits to 22 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G05117.1p  transcript_id AT2G05117.1  protein_id AT2G05117.1p  transcript_id AT2G05117.1  
At2g05120	chr2:001846674	0.0	C/1846674-1846858,1846480-1846586,1846060-1846397,1844588-1846007,1843634-1844355,1843402-1843554,1842864-1843200,1842699-1842766,1842069-1842596	AT2G05120.1  CDS  gene_syn F5G3.2, F5G3_2  go_component chloroplast|GO:0009507|15028209|IDA  product unknown protein  note LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Nup133, N-terminal (InterPro:IPR014908); Has 103 Blast hits to 103 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT2G05120.1p  transcript_id AT2G05120.1  protein_id AT2G05120.1p  transcript_id AT2G05120.1  
At2g05130	chr2:001849017	0.0	C/1849017-1850496	AT2G05130.1  mRNA_TE_gene  pseudo  gene_syn F5G3.3  note Transposable element gene, Mutator-like transposase family, has a 5.3e-16 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At2g05133	chr2:001851692	0.0	C/1851692-1852328	AT2G05133.1  pseudogenic_transcript  pseudo  function Pseudogene of AT2G37680  
At2g05140	chr2:001853935	0.0	W/1853935-1854009,1854190-1854307,1854391-1854485,1854600-1854706,1854810-1854903	AT2G05140.1  CDS  gene_syn F5G3.4, F5G3_4  go_component phosphoribosylaminoimidazole carboxylase complex|GO:0009320||IEA  go_process  de novo  IMP biosynthetic process|GO:0006189||IEA  go_function phosphoribosylaminoimidazole carboxylase activity|GO:0004638||IEA  go_component phosphoribosylaminoimidazole carboxylase complex|GO:0009320||ISS  go_process  de novo  IMP biosynthetic process|GO:0006189||ISS  go_function phosphoribosylaminoimidazole carboxylase activity|GO:0004638||ISS  product phosphoribosylaminoimidazole carboxylase family protein / AIR carboxylase family protein  note phosphoribosylaminoimidazole carboxylase family protein / AIR carboxylase family protein; FUNCTIONS IN: phosphoribosylaminoimidazole carboxylase activity; INVOLVED IN:  de novo  IMP biosynthetic process; LOCATED IN: phosphoribosylaminoimidazole carboxylase complex; CONTAINS InterPro DOMAIN/s: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase (InterPro:IPR000031); BEST Arabidopsis thaliana protein match is: phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative (TAIR:AT2G37690.1); Has 4750 Blast hits to 4740 proteins in 1317 species: Archae - 134; Bacteria - 2280; Metazoa - 90; Fungi - 112; Plants - 30; Viruses - 0; Other Eukaryotes - 2104 (source: NCBI BLink).  protein_id AT2G05140.1p  transcript_id AT2G05140.1  protein_id AT2G05140.1p  transcript_id AT2G05140.1  
At2g05150	chr2:001857570	0.0	W/1857570-1857927	AT2G05150.1  pseudogenic_transcript  pseudo  gene_syn F5G3.5  note pseudogene, similar to pyrophosphate-dependent phosphofructokinase beta subunit, blastp match of 55% identity and 7.1e-19 P-value to GP|3790100|gb|AAC67586.1||AF095520 pyrophosphate-dependent phosphofructokinase beta subunit {Citrus x paradisi}  
At2g05160	chr2:001860084	0.0	C/1860084-1860931,1859582-1860006,1859369-1859506,1859187-1859289,1859011-1859107	AT2G05160.1  CDS  gene_syn F5G3.6, F5G3_6  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein  note zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT3G52980.1); Has 148 Blast hits to 108 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G05160.1p  transcript_id AT2G05160.1  protein_id AT2G05160.1p  transcript_id AT2G05160.1  
At2g05170	chr2:001870020	0.0	W/1870020-1870235,1870380-1870553,1870630-1870938,1871026-1872777,1872931-1873278	AT2G05170.1  CDS  gene_syn ARABIDOPSIS THALIANA VACUOLAR PROTEIN SORTING 11, ATVPS11, F5G3.7, F5G3_7  gene ATVPS11  function Homologous to yeast VPS11. Forms a complex with VCL1 and AtVPS33. Involved in vacuolar biogenesis.  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component plant-type vacuole membrane|GO:0009705|12589039|IDA  go_process vacuole organization|GO:0007033|12589039|TAS  go_function transporter activity|GO:0005215||ISS  product ATVPS11; binding / protein binding / transporter/ zinc ion binding  note ATVPS11; FUNCTIONS IN: protein binding, transporter activity, binding, zinc ion binding; INVOLVED IN: vacuole organization; LOCATED IN: plant-type vacuole membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 11 (InterPro:IPR016528), Zinc finger, RING-type (InterPro:IPR001841), Armadillo-type fold (InterPro:IPR016024); Has 543 Blast hits to 463 proteins in 149 species: Archae - 0; Bacteria - 2; Metazoa - 225; Fungi - 178; Plants - 23; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).  protein_id AT2G05170.1p  transcript_id AT2G05170.1  protein_id AT2G05170.1p  transcript_id AT2G05170.1  
At2g05171	chr2:001874040	0.0	W/1874040-1874997	AT2G05171.1  pseudogenic_transcript  pseudo  function Pseudogene of AT3G18310  
At2g05180	chr2:001875390	0.0	W/1875390-1876307,1876384-1876794	AT2G05180.1  CDS  gene_syn CYP705A6, CYTOCHROME P450, FAMILY 705, SUBFAMILY A, POLYPEPTIDE 6, F5G3.8, F5G3_8  gene CYP705A6  function member of CYP705A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP705A6; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP705A6; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP705A3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G15360.1); Has 21193 Blast hits to 21089 proteins in 1161 species: Archae - 20; Bacteria - 1646; Metazoa - 9869; Fungi - 3685; Plants - 5300; Viruses - 6; Other Eukaryotes - 667 (source: NCBI BLink).  protein_id AT2G05180.1p  transcript_id AT2G05180.1  protein_id AT2G05180.1p  transcript_id AT2G05180.1  
At2g05185	chr2:001876974	0.0	W/1876974-1877086,1877685-1877838	AT2G05185.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22608.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G05185.1p  transcript_id AT2G05185.1  protein_id AT2G05185.1p  transcript_id AT2G05185.1  
At2g05190	chr2:001878725	0.0	W/1878725-1879018	AT2G05190.1  pseudogenic_transcript  pseudo  gene_syn F5G3.9  note pseudogene, cytochrome P450 -related, blastp match of 34% identity and 2.0e-07 P-value to SP|Q42798|C931_SOYBN Cytochrome P450 93A1 (EC 1.14.-.-). (Soybean) {Glycine max}  
At2g05200	chr2:001883052	0.0	W/1883052-1887007	AT2G05200.1  mRNA_TE_gene  pseudo  gene_syn F5G3.10, F5G3_10  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 8.3e-42 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At2g05210	chr2:001891814	0.0	W/1891814-1891940,1892075-1892211,1892284-1892476,1892582-1892679,1892833-1892912,1893054-1893320,1893425-1893501,1893609-1893667,1893749-1893907,1893990-1894196	AT2G05210.1  CDS  gene_syn ATPOT1, AtPOT1a, F5G3.11, F5G3_11, Protection of Telomeres 1a  gene AtPOT1a  function Encodes AtPOT1a, an accessory factor for telomerase required for positive telomere length regulation. Note on nomenclature: different names have been given to Arabidopsis POT-like genes (Kuchar and Fajkus, 2004; Shakirov et al, 2005; Tani and Murata, 2005). According to a unifying nomenclature (Surovtseva et al, 2007), At2g05210 (previously named AtPOT1) is designated AtPOT1a, while At5g06310 (previously named AtPOT2) is designated AtPOT1b.  go_component telomerase holoenzyme complex|GO:0005697|17627276|IPI  go_process telomere maintenance|GO:0000723|17627276|IMP  go_function telomeric DNA binding|GO:0042162|17627276|IDA  product AtPOT1a (Protection of Telomeres 1a); telomeric DNA binding  note Protection of Telomeres 1a (AtPOT1a); FUNCTIONS IN: telomeric DNA binding; INVOLVED IN: telomere maintenance; LOCATED IN: telomerase holoenzyme complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Telomere end binding protein (InterPro:IPR011564); BEST Arabidopsis thaliana protein match is: AtPOT1b (protection of telomeres 1b); DNA binding (TAIR:AT5G06310.1); Has 75 Blast hits to 74 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 2; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G05210.1p  transcript_id AT2G05210.1  protein_id AT2G05210.1p  transcript_id AT2G05210.1  
At2g05210	chr2:001891814	0.0	W/1891814-1891940,1892075-1892211,1892284-1892476,1892582-1892679,1892833-1892912,1893054-1893320,1893425-1893501,1893609-1893667,1893749-1893907,1893990-1894196	AT2G05210.2  CDS  gene_syn ATPOT1, AtPOT1a, F5G3.11, F5G3_11, Protection of Telomeres 1a  gene AtPOT1a  function Encodes AtPOT1a, an accessory factor for telomerase required for positive telomere length regulation. Note on nomenclature: different names have been given to Arabidopsis POT-like genes (Kuchar and Fajkus, 2004; Shakirov et al, 2005; Tani and Murata, 2005). According to a unifying nomenclature (Surovtseva et al, 2007), At2g05210 (previously named AtPOT1) is designated AtPOT1a, while At5g06310 (previously named AtPOT2) is designated AtPOT1b.  go_component telomerase holoenzyme complex|GO:0005697|17627276|IPI  go_process telomere maintenance|GO:0000723|17627276|IMP  go_function telomeric DNA binding|GO:0042162|17627276|IDA  product AtPOT1a (Protection of Telomeres 1a); telomeric DNA binding  note Protection of Telomeres 1a (AtPOT1a); FUNCTIONS IN: telomeric DNA binding; INVOLVED IN: telomere maintenance; LOCATED IN: telomerase holoenzyme complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Telomere end binding protein (InterPro:IPR011564); BEST Arabidopsis thaliana protein match is: AtPOT1b (protection of telomeres 1b); DNA binding (TAIR:AT5G06310.1); Has 75 Blast hits to 74 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 2; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G05210.2p  transcript_id AT2G05210.2  protein_id AT2G05210.2p  transcript_id AT2G05210.2  
At2g05210	chr2:001891814	0.0	W/1891814-1891940,1892075-1892211,1892284-1892476,1892582-1892679,1892833-1892912,1893054-1893320,1893425-1893501,1893609-1893667,1893749-1893907,1893990-1894196	AT2G05210.3  CDS  gene_syn ATPOT1, AtPOT1a, F5G3.11, F5G3_11, Protection of Telomeres 1a  gene AtPOT1a  function Encodes AtPOT1a, an accessory factor for telomerase required for positive telomere length regulation. Note on nomenclature: different names have been given to Arabidopsis POT-like genes (Kuchar and Fajkus, 2004; Shakirov et al, 2005; Tani and Murata, 2005). According to a unifying nomenclature (Surovtseva et al, 2007), At2g05210 (previously named AtPOT1) is designated AtPOT1a, while At5g06310 (previously named AtPOT2) is designated AtPOT1b.  go_component telomerase holoenzyme complex|GO:0005697|17627276|IPI  go_process telomere maintenance|GO:0000723|17627276|IMP  go_function telomeric DNA binding|GO:0042162|17627276|IDA  product AtPOT1a (Protection of Telomeres 1a); telomeric DNA binding  note Protection of Telomeres 1a (AtPOT1a); FUNCTIONS IN: telomeric DNA binding; INVOLVED IN: telomere maintenance; LOCATED IN: telomerase holoenzyme complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Telomere end binding protein (InterPro:IPR011564); BEST Arabidopsis thaliana protein match is: AtPOT1b (protection of telomeres 1b); DNA binding (TAIR:AT5G06310.1); Has 75 Blast hits to 74 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 2; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G05210.3p  transcript_id AT2G05210.3  protein_id AT2G05210.3p  transcript_id AT2G05210.3  
At2g05220	chr2:001894757	0.0	C/1894757-1895179	AT2G05220.1  CDS  gene_syn F5G3.12, F5G3_12  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S17 (RPS17B)  note 40S ribosomal protein S17 (RPS17B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome; CONTAINS InterPro DOMAIN/s: Ribosomal protein S17e (InterPro:IPR001210), Ribosomal protein S17e, conserved site (InterPro:IPR018273); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S17 (RPS17D) (TAIR:AT5G04800.4); Has 726 Blast hits to 726 proteins in 256 species: Archae - 117; Bacteria - 0; Metazoa - 270; Fungi - 97; Plants - 83; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT2G05220.1p  transcript_id AT2G05220.1  protein_id AT2G05220.1p  transcript_id AT2G05220.1  
At2g05220	chr2:001894757	0.0	C/1894757-1895179	AT2G05220.2  CDS  gene_syn F5G3.12, F5G3_12  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S17 (RPS17B)  note 40S ribosomal protein S17 (RPS17B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome; CONTAINS InterPro DOMAIN/s: Ribosomal protein S17e (InterPro:IPR001210), Ribosomal protein S17e, conserved site (InterPro:IPR018273); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S17 (RPS17D) (TAIR:AT5G04800.4); Has 726 Blast hits to 726 proteins in 256 species: Archae - 117; Bacteria - 0; Metazoa - 270; Fungi - 97; Plants - 83; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT2G05220.2p  transcript_id AT2G05220.2  protein_id AT2G05220.2p  transcript_id AT2G05220.2  
At2g05230	chr2:001899818	0.0	C/1899818-1901938	AT2G05230.1  CDS  gene_syn F5G3.13, F5G3_13  go_function heat shock protein binding|GO:0031072||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G05250.1); Has 9488 Blast hits to 9399 proteins in 1510 species: Archae - 50; Bacteria - 3239; Metazoa - 2173; Fungi - 628; Plants - 755; Viruses - 9; Other Eukaryotes - 2634 (source: NCBI BLink).  protein_id AT2G05230.1p  transcript_id AT2G05230.1  protein_id AT2G05230.1p  transcript_id AT2G05230.1  
At2g05240	chr2:001907462	0.0	C/1907462-1911569	AT2G05240.1  mRNA_TE_gene  pseudo  gene_syn F5G3.14  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At2g05250	chr2:001913645	0.0	C/1913645-1915765	AT2G05250.1  CDS  gene_syn F5G3.15  go_function heat shock protein binding|GO:0031072||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G05230.1); Has 9488 Blast hits to 9399 proteins in 1510 species: Archae - 50; Bacteria - 3239; Metazoa - 2173; Fungi - 628; Plants - 755; Viruses - 9; Other Eukaryotes - 2634 (source: NCBI BLink).  protein_id AT2G05250.1p  transcript_id AT2G05250.1  protein_id AT2G05250.1p  transcript_id AT2G05250.1  
At2g05260	chr2:001918730	0.0	W/1918730-1918791,1918879-1919665,1919757-1919792	AT2G05260.2  CDS  gene_syn F5G3.16, F5G3_16  go_component cellular_component|GO:0005575||ND  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product lipase class 3 family protein  note lipase class 3 family protein; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: lipase class 3 family protein (TAIR:AT4G10955.1); Has 115 Blast hits to 115 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G05260.2p  transcript_id AT2G05260.2  protein_id AT2G05260.2p  transcript_id AT2G05260.2  
At2g05260	chr2:001918730	0.0	W/1918730-1918791,1918879-1919893	AT2G05260.1  CDS  gene_syn F5G3.16, F5G3_16  go_component cellular_component|GO:0005575||ND  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product lipase class 3 family protein  note lipase class 3 family protein; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: lipase class 3 family protein (TAIR:AT4G10955.1); Has 115 Blast hits to 115 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G05260.1p  transcript_id AT2G05260.1  protein_id AT2G05260.1p  transcript_id AT2G05260.1  
At2g05270	chr2:001920885	0.0	C/1920885-1920989	AT2G05270.1  CDS  gene_syn F5G3.17, F5G3_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, pollen tube; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G05270.1p  transcript_id AT2G05270.1  protein_id AT2G05270.1p  transcript_id AT2G05270.1  
At2g05280	chr2:001921241	0.0	C/1921241-1925279	AT2G05280.1  mRNA_TE_gene  pseudo  gene_syn F5G3.18  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 9.4e-30 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)  
At2g05290	chr2:001924850	0.0	C/1924850-1926681	AT2G05290.1  mRNA_TE_gene  pseudo  gene_syn F5G3.19, F5G3_19  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G41570.1); similar to 80C09_29 [Brassica rapa subsp. pekinensis] (GB:AAZ41840.1)  
At2g05294	chr2:001928530	0.0	C/1928530-1928622	AT2G05294.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G05294.1p  transcript_id AT2G05294.1  protein_id AT2G05294.1p  transcript_id AT2G05294.1  
At2g05300	chr2:001930929	0.0	W/1930929-1932999	AT2G05300.2  pseudogenic_transcript  pseudo  gene_syn F5G3.20, F5G3_20  function pseudogene of the F-box protein family  
At2g05300	chr2:001930929	0.0	W/1930929-1932999	AT2G05300.2  pseudogenic_transcript  pseudo  gene_syn F5G3.20, F5G3_20  function pseudogene of the F-box protein family  
At2g05310	chr2:001933983	0.0	C/1933983-1934145,1933848-1933917,1933391-1933535	AT2G05310.1  CDS  gene_syn F5G3.21, F5G3_21  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13500.1); Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G05310.1p  transcript_id AT2G05310.1  protein_id AT2G05310.1p  transcript_id AT2G05310.1  
At2g05320	chr2:001936016	0.0	W/1936016-1937308	AT2G05320.1  CDS  gene_syn F5G3.22, F5G3_22  go_component Golgi stack|GO:0005795||IEA  go_component integral to membrane|GO:0016021||IEA  go_process peptidoglycan biosynthetic process|GO:0009252||IEA  go_process oligosaccharide biosynthetic process|GO:0009312||IEA  go_function alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity|GO:0008455||IEA  go_function acetylglucosaminyltransferase activity|GO:0008375||ISS  product beta-1,2-N-acetylglucosaminyltransferase II  note beta-1,2-N-acetylglucosaminyltransferase II; FUNCTIONS IN: acetylglucosaminyltransferase activity, alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity; INVOLVED IN: oligosaccharide biosynthetic process, peptidoglycan biosynthetic process; LOCATED IN: Golgi stack, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: N-acetylglucosaminyltransferase II (InterPro:IPR007754); Has 181 Blast hits to 150 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 163; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G05320.1p  transcript_id AT2G05320.1  protein_id AT2G05320.1p  transcript_id AT2G05320.1  
At2g05330	chr2:001939366	0.0	C/1939366-1939470,1938618-1939160	AT2G05330.1  CDS  gene_syn F5G3.23, F5G3_23  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product speckle-type POZ protein-related  note speckle-type POZ protein-related; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: speckle-type POZ protein-related (TAIR:AT5G48510.1); Has 524 Blast hits to 524 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 286; Fungi - 0; Plants - 217; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT2G05330.1p  transcript_id AT2G05330.1  protein_id AT2G05330.1p  transcript_id AT2G05330.1  
At2g05335	chr2:001942557	0.0	W/1942557-1942626,1942807-1943042	AT2G05335.1  CDS  gene_syn SCR-Like 15, SCRL15  gene SCRL15  function Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165||IEA  product SCRL15 (SCR-Like 15)  note SCR-Like 15 (SCRL15); INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility response (InterPro:IPR010682); BEST Arabidopsis thaliana protein match is: SCRL16 (SCR-Like 16) (TAIR:AT2G06983.1); Has 13 Blast hits to 13 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G05335.1p  transcript_id AT2G05335.1  protein_id AT2G05335.1p  transcript_id AT2G05335.1  
At2g05340	chr2:001946843	0.0	W/1946843-1947592	AT2G05340.1  mRNA_TE_gene  pseudo  gene_syn F5G3.24  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 0.00039 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g05350	chr2:001950455	0.0	W/1950455-1950739,1951523-1951837,1952143-1952211,1952295-1952375,1952910-1952999,1953130-1953239,1954078-1954275,1954527-1954740	AT2G05350.1  CDS  gene_syn F16J10.10, F16J10_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 3 Blast hits to 3 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G05350.1p  transcript_id AT2G05350.1  protein_id AT2G05350.1p  transcript_id AT2G05350.1  
At2g05360	chr2:001958846	0.0	C/1958846-1959303,1958408-1958591,1957094-1957303,1956809-1956877,1956115-1956270	AT2G05360.1  CDS  gene_syn F16J10.9, F16J10_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: F-box family protein-related (TAIR:AT1G64295.1); Has 29 Blast hits to 27 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G05360.1p  transcript_id AT2G05360.1  protein_id AT2G05360.1p  transcript_id AT2G05360.1  
At2g05370	chr2:001961012	0.0	C/1961012-1961443	AT2G05370.2  CDS  gene_syn F16J10.8, F16J10_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: RDR6 (RNA-DEPENDENT RNA POLYMERASE 6); RNA-directed RNA polymerase/ nucleic acid binding (TAIR:AT3G49500.1).  protein_id AT2G05370.2p  transcript_id AT2G05370.2  protein_id AT2G05370.2p  transcript_id AT2G05370.2  
At2g05370	chr2:001961048	0.0	C/1961048-1961425,1960705-1960935,1960413-1960439	AT2G05370.1  CDS  gene_syn F16J10.8, F16J10_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: RDR6 (RNA-DEPENDENT RNA POLYMERASE 6); RNA-directed RNA polymerase/ nucleic acid binding (TAIR:AT3G49500.1); Has 35 Blast hits to 21 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G05370.1p  transcript_id AT2G05370.1  protein_id AT2G05370.1p  transcript_id AT2G05370.1  
At2g05380	chr2:001966851	0.0	W/1966851-1966923,1967543-1967635,1967678-1967820	AT2G05380.2  CDS  gene_syn F16J10.7, F16J10_7, GLYCINE-RICH PROTEIN 3 SHORT ISOFORM, GRP3S  gene GRP3S  function glycine-rich protein 3 short isoform (GRP3S) mRNA, complete  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product GRP3S (GLYCINE-RICH PROTEIN 3 SHORT ISOFORM)  note GLYCINE-RICH PROTEIN 3 SHORT ISOFORM (GRP3S); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycine rich (InterPro:IPR010800); BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT2G05530.1); Has 182 Blast hits to 173 proteins in 42 species: Archae - 0; Bacteria - 14; Metazoa - 19; Fungi - 2; Plants - 143; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G05380.2p  transcript_id AT2G05380.2  protein_id AT2G05380.2p  transcript_id AT2G05380.2  
At2g05380	chr2:001966851	0.0	W/1966851-1966923,1967543-1967820	AT2G05380.1  CDS  gene_syn F16J10.7, F16J10_7, GLYCINE-RICH PROTEIN 3 SHORT ISOFORM, GRP3S  gene GRP3S  function glycine-rich protein 3 short isoform (GRP3S) mRNA, complete  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product GRP3S (GLYCINE-RICH PROTEIN 3 SHORT ISOFORM)  note GLYCINE-RICH PROTEIN 3 SHORT ISOFORM (GRP3S); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycine rich (InterPro:IPR010800); BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT2G05530.1); Has 23809 Blast hits to 8098 proteins in 757 species: Archae - 8; Bacteria - 4914; Metazoa - 9468; Fungi - 1385; Plants - 5352; Viruses - 314; Other Eukaryotes - 2368 (source: NCBI BLink).  protein_id AT2G05380.1p  transcript_id AT2G05380.1  protein_id AT2G05380.1p  transcript_id AT2G05380.1  
At2g05390	chr2:001970709	0.0	W/1970709-1974726	AT2G05390.1  mRNA_TE_gene  pseudo  gene_syn F16J10.6, F16J10_6  note Transposable element gene, copia-like retrotransposon family, has a 7.2e-200 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At2g05400	chr2:001975574	0.0	W/1975574-1975747,1975929-1976339	AT2G05400.1  CDS  gene_syn F16J10.5, F16J10_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease-related / meprin and TRAF homology (MATH) domain-containing protein-related (TAIR:AT2G05410.1); Has 139 Blast hits to 124 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G05400.1p  transcript_id AT2G05400.1  protein_id AT2G05400.1p  transcript_id AT2G05400.1  
At2g05400	chr2:001975574	0.0	W/1975574-1975747,1975929-1976339	AT2G05400.2  CDS  gene_syn F16J10.5, F16J10_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease-related / meprin and TRAF homology (MATH) domain-containing protein-related (TAIR:AT2G05410.1); Has 139 Blast hits to 124 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G05400.2p  transcript_id AT2G05400.2  protein_id AT2G05400.2p  transcript_id AT2G05400.2  
At2g05410	chr2:001977490	0.0	W/1977490-1977646,1977754-1977977,1978137-1978553	AT2G05410.1  CDS  gene_syn F16J10.4, F16J10_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ubiquitin-specific protease-related / meprin and TRAF homology (MATH) domain-containing protein-related  note ubiquitin-specific protease-related / meprin and TRAF homology (MATH) domain-containing protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT2G05420.1); Has 220 Blast hits to 192 proteins in 19 species: Archae - 2; Bacteria - 0; Metazoa - 4; Fungi - 2; Plants - 201; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT2G05410.1p  transcript_id AT2G05410.1  protein_id AT2G05410.1p  transcript_id AT2G05410.1  
At2g05420	chr2:001983901	0.0	W/1983901-1984010,1984091-1984272,1984524-1984744,1984961-1985341	AT2G05420.1  CDS  gene_syn F16J10.3, F16J10_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT3G58350.1); Has 428 Blast hits to 361 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 29; Plants - 358; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT2G05420.1p  transcript_id AT2G05420.1  protein_id AT2G05420.1p  transcript_id AT2G05420.1  
At2g05430	chr2:001986454	0.0	W/1986454-1986570,1986652-1987101	AT2G05430.1  CDS  gene_syn F16J10.2, F16J10_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58230.1); Has 136 Blast hits to 126 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G05430.1p  transcript_id AT2G05430.1  protein_id AT2G05430.1p  transcript_id AT2G05430.1  
At2g05435	chr2:001989194	0.0	W/1989194-1989867	AT2G05435.1  mRNA_TE_gene  pseudo  gene_syn T20G20.22  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 6.5e-19 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)  
At2g05440	chr2:001993134	0.0	W/1993134-1993215,1993574-1993723,1993745-1993956	AT2G05440.4  CDS  gene_syn T20G20.21, T20G20_21  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycine rich (InterPro:IPR010800); Has 126986 Blast hits to 29950 proteins in 1627 species: Archae - 181; Bacteria - 37082; Metazoa - 47355; Fungi - 8261; Plants - 11991; Viruses - 1390; Other Eukaryotes - 20726 (source: NCBI BLink).  protein_id AT2G05440.4p  transcript_id AT2G05440.4  protein_id AT2G05440.4p  transcript_id AT2G05440.4  
At2g05440	chr2:001993134	0.0	W/1993134-1993215,1993574-1993744,1993787-1993956	AT2G05440.5  CDS  gene_syn T20G20.21, T20G20_21  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycine rich (InterPro:IPR010800); Has 119017 Blast hits to 28773 proteins in 1595 species: Archae - 155; Bacteria - 36010; Metazoa - 43253; Fungi - 7599; Plants - 11563; Viruses - 1318; Other Eukaryotes - 19119 (source: NCBI BLink).  protein_id AT2G05440.5p  transcript_id AT2G05440.5  protein_id AT2G05440.5p  transcript_id AT2G05440.5  
At2g05440	chr2:001993134	0.0	W/1993134-1993215,1993574-1993744,1993808-1993956	AT2G05440.7  CDS  gene_syn T20G20.21, T20G20_21  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycine rich (InterPro:IPR010800); Has 112195 Blast hits to 27880 proteins in 1569 species: Archae - 143; Bacteria - 35870; Metazoa - 38971; Fungi - 7081; Plants - 11046; Viruses - 1323; Other Eukaryotes - 17761 (source: NCBI BLink).  protein_id AT2G05440.7p  transcript_id AT2G05440.7  protein_id AT2G05440.7p  transcript_id AT2G05440.7  
At2g05440	chr2:001993134	0.0	W/1993134-1993215,1993574-1993765,1993847-1993956	AT2G05440.1  CDS  gene_syn T20G20.21, T20G20_21  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycine rich (InterPro:IPR010800); Has 100848 Blast hits to 24373 proteins in 1480 species: Archae - 110; Bacteria - 34756; Metazoa - 33505; Fungi - 5981; Plants - 10071; Viruses - 1159; Other Eukaryotes - 15266 (source: NCBI BLink).  protein_id AT2G05440.1p  transcript_id AT2G05440.1  protein_id AT2G05440.1p  transcript_id AT2G05440.1  
At2g05440	chr2:001993134	0.0	W/1993134-1993215,1993574-1993765,1993886-1993956	AT2G05440.8  CDS  gene_syn T20G20.21, T20G20_21  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycine rich (InterPro:IPR010800); Has 86405 Blast hits to 19569 proteins in 1290 species: Archae - 49; Bacteria - 33287; Metazoa - 29082; Fungi - 4417; Plants - 8568; Viruses - 926; Other Eukaryotes - 10076 (source: NCBI BLink).  protein_id AT2G05440.8p  transcript_id AT2G05440.8  protein_id AT2G05440.8p  transcript_id AT2G05440.8  
At2g05440	chr2:001993134	0.0	W/1993134-1993215,1993574-1993786,1993910-1993956	AT2G05440.6  CDS  gene_syn T20G20.21, T20G20_21  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycine rich (InterPro:IPR010800); Has 82951 Blast hits to 18688 proteins in 1286 species: Archae - 47; Bacteria - 32142; Metazoa - 27822; Fungi - 4271; Plants - 8584; Viruses - 909; Other Eukaryotes - 9176 (source: NCBI BLink).  protein_id AT2G05440.6p  transcript_id AT2G05440.6  protein_id AT2G05440.6p  transcript_id AT2G05440.6  
At2g05440	chr2:001993134	0.0	W/1993134-1993215,1993574-1993807,1993877-1993956	AT2G05440.3  CDS  gene_syn T20G20.21, T20G20_21  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycine rich (InterPro:IPR010800); Has 101667 Blast hits to 24561 proteins in 1461 species: Archae - 93; Bacteria - 33911; Metazoa - 35218; Fungi - 6178; Plants - 10068; Viruses - 1030; Other Eukaryotes - 15169 (source: NCBI BLink).  protein_id AT2G05440.3p  transcript_id AT2G05440.3  protein_id AT2G05440.3p  transcript_id AT2G05440.3  
At2g05440	chr2:001993134	0.0	W/1993134-1993215,1993574-1993956	AT2G05440.2  CDS  gene_syn T20G20.21, T20G20_21  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycine rich (InterPro:IPR010800); Has 135404 Blast hits to 30795 proteins in 1653 species: Archae - 203; Bacteria - 38133; Metazoa - 52051; Fungi - 9048; Plants - 12755; Viruses - 1454; Other Eukaryotes - 21760 (source: NCBI BLink).  protein_id AT2G05440.2p  transcript_id AT2G05440.2  protein_id AT2G05440.2p  transcript_id AT2G05440.2  
At2g05441	chr2:001994362	0.0	W/1994362-1995546	AT2G05441.1  pseudogenic_transcript  pseudo  function unknown pseudogene  
At2g05450	chr2:001996202	0.0	W/1996202-2001144	AT2G05450.1  mRNA_TE_gene  pseudo  gene_syn T20G20.20, T20G20_20  note Transposable element gene, pseudogene, Ulp1 protease family, contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain; similar to At5g28270, At2g12100, At1g45090, At2g16180, At2g06750  
At2g05460	chr2:002001506	0.0	W/2001506-2002195	AT2G05460.1  mRNA_TE_gene  pseudo  gene_syn T20G20.19, T20G20_19  function pseudogene of Ulp1 protease family protein  note Transposable element gene, expressed protein, similar to At2g16170, At2g06640, At2g12110, At2g12100, At3g42590  
At2g05470	chr2:002002870	0.0	W/2002870-2003564	AT2G05470.1  mRNA_TE_gene  pseudo  gene_syn T20G20.18, T20G20_18  note Transposable element gene, pseudogene, hypothetical protein, similar to At2g06630, At2g12120, At1g45090, At5g28482  
At2g05475	chr2:002004334	0.0	W/2004334-2005026	AT2G05475.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g05480	chr2:002005388	0.0	C/2005388-2006337	AT2G05480.1  mRNA_TE_gene  pseudo  gene_syn T20G20.17, T20G20_17  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G45080.1); similar to hypothetical protein 31.t00082 [Brassica oleracea] (GB:ABD65101.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At2g05490	chr2:002006873	0.0	C/2006873-2009701	AT2G05490.1  mRNA_TE_gene  pseudo  gene_syn T20G20.16, T20G20_16  note Transposable element gene, Mutator-like transposase family, has a 4.4e-88 P-value blast match to Q9SL18 /349-510 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g05500	chr2:002015298	0.0	C/2015298-2015406,2014368-2014525	AT2G05500.1  CDS  gene_syn T20G20.15, T20G20_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G05500.1p  transcript_id AT2G05500.1  protein_id AT2G05500.1p  transcript_id AT2G05500.1  
At2g05510	chr2:002015807	0.0	W/2015807-2015888,2016226-2016288,2016391-2016527	AT2G05510.6  CDS  gene_syn T20G20.14, T20G20_14  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycine rich (InterPro:IPR010800); BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT2G05440.8); Has 108 Blast hits to 108 proteins in 21 species: Archae - 0; Bacteria - 4; Metazoa - 14; Fungi - 13; Plants - 76; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G05510.6p  transcript_id AT2G05510.6  protein_id AT2G05510.6p  transcript_id AT2G05510.6  
At2g05510	chr2:002015807	0.0	W/2015807-2015888,2016226-2016321,2016433-2016527	AT2G05510.3  CDS  gene_syn T20G20.14, T20G20_14  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycine rich (InterPro:IPR010800); BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT2G05440.8); Has 18349 Blast hits to 5879 proteins in 598 species: Archae - 5; Bacteria - 3531; Metazoa - 7308; Fungi - 972; Plants - 4545; Viruses - 147; Other Eukaryotes - 1841 (source: NCBI BLink).  protein_id AT2G05510.3p  transcript_id AT2G05510.3  protein_id AT2G05510.3p  transcript_id AT2G05510.3  
At2g05510	chr2:002015807	0.0	W/2015807-2015888,2016226-2016354,2016424-2016527	AT2G05510.2  CDS  gene_syn T20G20.14, T20G20_14  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycine rich (InterPro:IPR010800); BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT2G05440.8); Has 68514 Blast hits to 16338 proteins in 1140 species: Archae - 45; Bacteria - 27682; Metazoa - 21272; Fungi - 3328; Plants - 8306; Viruses - 1038; Other Eukaryotes - 6843 (source: NCBI BLink).  protein_id AT2G05510.2p  transcript_id AT2G05510.2  protein_id AT2G05510.2p  transcript_id AT2G05510.2  
At2g05510	chr2:002015807	0.0	W/2015807-2015888,2016226-2016354,2016433-2016527	AT2G05510.5  CDS  gene_syn T20G20.14, T20G20_14  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycine rich (InterPro:IPR010800); BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT2G05440.8); Has 152 Blast hits to 152 proteins in 38 species: Archae - 0; Bacteria - 26; Metazoa - 18; Fungi - 15; Plants - 83; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT2G05510.5p  transcript_id AT2G05510.5  protein_id AT2G05510.5p  transcript_id AT2G05510.5  
At2g05510	chr2:002015807	0.0	W/2015807-2015888,2016226-2016527	AT2G05510.1  CDS  gene_syn T20G20.14, T20G20_14  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycine rich (InterPro:IPR010800); BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT2G05440.8); Has 88548 Blast hits to 21822 proteins in 1405 species: Archae - 77; Bacteria - 32392; Metazoa - 28345; Fungi - 5298; Plants - 9242; Viruses - 992; Other Eukaryotes - 12202 (source: NCBI BLink).  protein_id AT2G05510.1p  transcript_id AT2G05510.1  protein_id AT2G05510.1p  transcript_id AT2G05510.1  
At2g05510	chr2:002016228	0.0	W/2016228-2016527	AT2G05510.4  CDS  gene_syn T20G20.14, T20G20_14  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Glycine rich (InterPro:IPR010800); Has 90294 Blast hits to 21436 proteins in 1391 species: Archae - 78; Bacteria - 32959; Metazoa - 28709; Fungi - 5341; Plants - 9745; Viruses - 1048; Other Eukaryotes - 12414 (source: NCBI BLink).  protein_id AT2G05510.4p  transcript_id AT2G05510.4  protein_id AT2G05510.4p  transcript_id AT2G05510.4  
At2g05518	chr2:002023295	0.0	W/2023295-2023995	AT2G05518.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G05518.1  
At2g05520	chr2:002026217	0.0	W/2026217-2026295,2026524-2026610,2026671-2026882	AT2G05520.3  CDS  gene_syn ATGRP-3, GLYCINE-RICH PROTEIN 3, GRP-3, GRP3, T20G20.13, T20G20_13  gene GRP-3  function Encodes a glycine-rich protein that is expressed mainly in stems and leaves. mRNA levels are upregulated in response to ABA, salicylic acid and ethylene but downregulated in response to dessication.  go_component endomembrane system|GO:0012505||IEA  go_process response to desiccation|GO:0009269|2152168|IEP  go_process response to ethylene stimulus|GO:0009723|2152168|IEP  go_process response to abscisic acid stimulus|GO:0009737|2152168|IEP  go_process response to salicylic acid stimulus|GO:0009751|2152168|IEP  go_function molecular_function|GO:0003674||ND  product GRP-3 (GLYCINE-RICH PROTEIN 3)  note GLYCINE-RICH PROTEIN 3 (GRP-3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to ethylene stimulus, response to desiccation, response to abscisic acid stimulus, response to salicylic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycine rich (InterPro:IPR010800); Has 19930 Blast hits to 6974 proteins in 662 species: Archae - 5; Bacteria - 4419; Metazoa - 7837; Fungi - 1079; Plants - 4413; Viruses - 162; Other Eukaryotes - 2015 (source: NCBI BLink).  protein_id AT2G05520.3p  transcript_id AT2G05520.3  protein_id AT2G05520.3p  transcript_id AT2G05520.3  
At2g05520	chr2:002026217	0.0	W/2026217-2026295,2026524-2026610,2026713-2026882	AT2G05520.5  CDS  gene_syn ATGRP-3, GLYCINE-RICH PROTEIN 3, GRP-3, GRP3, T20G20.13, T20G20_13  gene GRP-3  function Encodes a glycine-rich protein that is expressed mainly in stems and leaves. mRNA levels are upregulated in response to ABA, salicylic acid and ethylene but downregulated in response to dessication.  go_component endomembrane system|GO:0012505||IEA  go_process response to desiccation|GO:0009269|2152168|IEP  go_process response to ethylene stimulus|GO:0009723|2152168|IEP  go_process response to abscisic acid stimulus|GO:0009737|2152168|IEP  go_process response to salicylic acid stimulus|GO:0009751|2152168|IEP  go_function molecular_function|GO:0003674||ND  product GRP-3 (GLYCINE-RICH PROTEIN 3)  note GLYCINE-RICH PROTEIN 3 (GRP-3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to ethylene stimulus, response to desiccation, response to abscisic acid stimulus, response to salicylic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycine rich (InterPro:IPR010800); Has 4001 Blast hits to 1972 proteins in 287 species: Archae - 0; Bacteria - 558; Metazoa - 1656; Fungi - 242; Plants - 1136; Viruses - 7; Other Eukaryotes - 402 (source: NCBI BLink).  protein_id AT2G05520.5p  transcript_id AT2G05520.5  protein_id AT2G05520.5p  transcript_id AT2G05520.5  
At2g05520	chr2:002026217	0.0	W/2026217-2026295,2026524-2026628,2026650-2026882	AT2G05520.2  CDS  gene_syn ATGRP-3, GLYCINE-RICH PROTEIN 3, GRP-3, GRP3, T20G20.13, T20G20_13  gene GRP-3  function Encodes a glycine-rich protein that is expressed mainly in stems and leaves. mRNA levels are upregulated in response to ABA, salicylic acid and ethylene but downregulated in response to dessication.  go_component endomembrane system|GO:0012505||IEA  go_process response to desiccation|GO:0009269|2152168|IEP  go_process response to ethylene stimulus|GO:0009723|2152168|IEP  go_process response to abscisic acid stimulus|GO:0009737|2152168|IEP  go_process response to salicylic acid stimulus|GO:0009751|2152168|IEP  go_function molecular_function|GO:0003674||ND  product GRP-3 (GLYCINE-RICH PROTEIN 3)  note GLYCINE-RICH PROTEIN 3 (GRP-3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to ethylene stimulus, response to desiccation, response to abscisic acid stimulus, response to salicylic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycine rich (InterPro:IPR010800); Has 47491 Blast hits to 13817 proteins in 1035 species: Archae - 22; Bacteria - 16293; Metazoa - 16447; Fungi - 2555; Plants - 6468; Viruses - 779; Other Eukaryotes - 4927 (source: NCBI BLink).  protein_id AT2G05520.2p  transcript_id AT2G05520.2  protein_id AT2G05520.2p  transcript_id AT2G05520.2  
At2g05520	chr2:002026217	0.0	W/2026217-2026295,2026524-2026649,2026713-2026882	AT2G05520.4  CDS  gene_syn ATGRP-3, GLYCINE-RICH PROTEIN 3, GRP-3, GRP3, T20G20.13, T20G20_13  gene GRP-3  function Encodes a glycine-rich protein that is expressed mainly in stems and leaves. mRNA levels are upregulated in response to ABA, salicylic acid and ethylene but downregulated in response to dessication.  go_component endomembrane system|GO:0012505||IEA  go_process response to desiccation|GO:0009269|2152168|IEP  go_process response to ethylene stimulus|GO:0009723|2152168|IEP  go_process response to abscisic acid stimulus|GO:0009737|2152168|IEP  go_process response to salicylic acid stimulus|GO:0009751|2152168|IEP  go_function molecular_function|GO:0003674||ND  product GRP-3 (GLYCINE-RICH PROTEIN 3)  note GLYCINE-RICH PROTEIN 3 (GRP-3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to ethylene stimulus, response to desiccation, response to abscisic acid stimulus, response to salicylic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycine rich (InterPro:IPR010800); Has 21314 Blast hits to 7333 proteins in 697 species: Archae - 6; Bacteria - 4717; Metazoa - 8200; Fungi - 1202; Plants - 4738; Viruses - 213; Other Eukaryotes - 2238 (source: NCBI BLink).  protein_id AT2G05520.4p  transcript_id AT2G05520.4  protein_id AT2G05520.4p  transcript_id AT2G05520.4  
At2g05520	chr2:002026217	0.0	W/2026217-2026295,2026524-2026649,2026734-2026882	AT2G05520.6  CDS  gene_syn ATGRP-3, GLYCINE-RICH PROTEIN 3, GRP-3, GRP3, T20G20.13, T20G20_13  gene GRP-3  function Encodes a glycine-rich protein that is expressed mainly in stems and leaves. mRNA levels are upregulated in response to ABA, salicylic acid and ethylene but downregulated in response to dessication.  go_component endomembrane system|GO:0012505||IEA  go_process response to desiccation|GO:0009269|2152168|IEP  go_process response to ethylene stimulus|GO:0009723|2152168|IEP  go_process response to abscisic acid stimulus|GO:0009737|2152168|IEP  go_process response to salicylic acid stimulus|GO:0009751|2152168|IEP  go_function molecular_function|GO:0003674||ND  product GRP-3 (GLYCINE-RICH PROTEIN 3)  note GLYCINE-RICH PROTEIN 3 (GRP-3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to ethylene stimulus, response to desiccation, response to abscisic acid stimulus, response to salicylic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycine rich (InterPro:IPR010800); Has 92 Blast hits to 90 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G05520.6p  transcript_id AT2G05520.6  protein_id AT2G05520.6p  transcript_id AT2G05520.6  
At2g05520	chr2:002026217	0.0	W/2026217-2026295,2026524-2026882	AT2G05520.1  CDS  gene_syn ATGRP-3, GLYCINE-RICH PROTEIN 3, GRP-3, GRP3, T20G20.13, T20G20_13  gene GRP-3  function Encodes a glycine-rich protein that is expressed mainly in stems and leaves. mRNA levels are upregulated in response to ABA, salicylic acid and ethylene but downregulated in response to dessication.  go_component endomembrane system|GO:0012505||IEA  go_process response to desiccation|GO:0009269|2152168|IEP  go_process response to ethylene stimulus|GO:0009723|2152168|IEP  go_process response to abscisic acid stimulus|GO:0009737|2152168|IEP  go_process response to salicylic acid stimulus|GO:0009751|2152168|IEP  go_function molecular_function|GO:0003674||ND  product GRP-3 (GLYCINE-RICH PROTEIN 3)  note GLYCINE-RICH PROTEIN 3 (GRP-3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to ethylene stimulus, response to desiccation, response to abscisic acid stimulus, response to salicylic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycine rich (InterPro:IPR010800); Has 61679 Blast hits to 16000 proteins in 1148 species: Archae - 25; Bacteria - 23108; Metazoa - 20459; Fungi - 3298; Plants - 7082; Viruses - 799; Other Eukaryotes - 6908 (source: NCBI BLink).  protein_id AT2G05520.1p  transcript_id AT2G05520.1  protein_id AT2G05520.1p  transcript_id AT2G05520.1  
At2g05530	chr2:002029755	0.0	W/2029755-2029830,2030049-2030320	AT2G05530.1  CDS  gene_syn T20G20.12, T20G20_12  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Glycine rich (InterPro:IPR010800); Has 30556 Blast hits to 8985 proteins in 757 species: Archae - 8; Bacteria - 8847; Metazoa - 10799; Fungi - 1873; Plants - 5343; Viruses - 281; Other Eukaryotes - 3405 (source: NCBI BLink).  protein_id AT2G05530.1p  transcript_id AT2G05530.1  protein_id AT2G05530.1p  transcript_id AT2G05530.1  
At2g05540	chr2:002033265	0.0	W/2033265-2033373,2033680-2033978	AT2G05540.1  CDS  gene_syn T20G20.11, T20G20_11  go_component endomembrane system|GO:0012505||IEA  product glycine-rich protein  note glycine-rich protein; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glycine rich (InterPro:IPR010800); Has 20361 Blast hits to 7141 proteins in 685 species: Archae - 4; Bacteria - 2947; Metazoa - 9104; Fungi - 1634; Plants - 4601; Viruses - 106; Other Eukaryotes - 1965 (source: NCBI BLink).  protein_id AT2G05540.1p  transcript_id AT2G05540.1  protein_id AT2G05540.1p  transcript_id AT2G05540.1  
At2g05550	chr2:002036684	0.0	C/2036684-2040701	AT2G05550.1  mRNA_TE_gene  pseudo  gene_syn T20G20.10, T20G20_10  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 6.6e-37 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At2g05560	chr2:002042471	0.0	W/2042471-2047377	AT2G05560.1  mRNA_TE_gene  pseudo  gene_syn T20G20.9, T20G20_9  note Transposable element gene, pseudogene, Ulp1 protease family, contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain; similar to At3g24380, At5g36840, At5g35010, At3g42740, At4g05290, At2g14770, At3g43390, At4g08880, At1g34730, At1g27790, At1g34740, At1g27780, At5g36850, At3g42730, At1g52020, At3g24390, At4g05280, At1g25886, At4g03300; this may be a pseudogene.  
At2g05562	chr2:002047634	0.0	W/2047634-2048428	AT2G05562.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G27780.1); similar to hypothetical protein 40.t00047 [Brassica oleracea] (GB:ABD65162.1); contains InterPro domain Tetracyclin repressor-like, C-terminal; (InterPro:IPR011075)  
At2g05564	chr2:002049209	0.0	W/2049209-2049904	AT2G05564.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14774.1); similar to hypothetical protein 40.t00047 [Brassica oleracea] (GB:ABD65162.1)  
At2g05567	chr2:002050349	0.0	W/2050349-2051038	AT2G05567.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g05570	chr2:002051569	0.0	C/2051569-2053475	AT2G05570.1  mRNA_TE_gene  pseudo  gene_syn T20G20.8, T20G20_8  note Transposable element gene, Mutator-like transposase family, has a 4.8e-75 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g05580	chr2:002055578	0.0	W/2055578-2055674,2055752-2056563	AT2G05580.1  CDS  gene_syn T20G20.7, T20G20_7  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system.  protein_id AT2G05580.1p  transcript_id AT2G05580.1  protein_id AT2G05580.1p  transcript_id AT2G05580.1  
At2g05590	chr2:002067196	0.0	W/2067196-2067300,2067386-2067762,2067847-2067919,2067990-2068070,2068158-2068221,2068559-2068646,2068738-2068822,2068913-2068951	AT2G05590.2  CDS  gene_syn T20G20.6, T20G20_6  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TLDc (InterPro:IPR006571); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G39870.1); Has 697 Blast hits to 689 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 403; Fungi - 84; Plants - 66; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).  protein_id AT2G05590.2p  transcript_id AT2G05590.2  protein_id AT2G05590.2p  transcript_id AT2G05590.2  
At2g05590	chr2:002067196	0.0	W/2067196-2067300,2067386-2067762,2067847-2067919,2067990-2068070,2068158-2068221,2068559-2068650	AT2G05590.1  CDS  gene_syn T20G20.6, T20G20_6  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TLDc (InterPro:IPR006571); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G39870.1); Has 522 Blast hits to 522 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 307; Fungi - 48; Plants - 62; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT2G05590.1p  transcript_id AT2G05590.1  protein_id AT2G05590.1p  transcript_id AT2G05590.1  
At2g05600	chr2:002072646	0.0	W/2072646-2072829,2073012-2073547	AT2G05600.1  CDS  gene_syn T20G20.5, T20G20_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G02030.1); Has 96 Blast hits to 91 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G05600.1p  transcript_id AT2G05600.1  protein_id AT2G05600.1p  transcript_id AT2G05600.1  
At2g05610	chr2:002075672	0.0	C/2075672-2078500	AT2G05610.1  mRNA_TE_gene  pseudo  gene_syn T20G20.4, T20G20_4  note Transposable element gene, gypsy-like retrotransposon family, has a 1.2e-179 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At2g05620	chr2:002081391	0.0	C/2081391-2081687,2081204-2081308	AT2G05620.1  CDS  gene_syn PGR5, T20G20.3, T20G20_3, proton gradient regulation 5  gene PGR5  function Involved in electron flow in Photosystem I. Essential for photoprotection.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid|GO:0009534|12176323|IDA  go_process response to water deprivation|GO:0009414|18663471|IMP  go_process response to high light intensity|GO:0009644|18663471|IMP  go_process photosynthetic electron transport in photosystem I|GO:0009773|12176323|IMP  go_process photosynthetic electron transport in photosystem I|GO:0009773|18243102|IMP  go_function electron carrier activity|GO:0009055|12176323|IMP  product PGR5 (proton gradient regulation 5); electron carrier  note proton gradient regulation 5 (PGR5); FUNCTIONS IN: electron carrier activity; INVOLVED IN: response to high light intensity, response to water deprivation, photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast thylakoid; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 15 growth stages; Has 60 Blast hits to 60 proteins in 31 species: Archae - 0; Bacteria - 18; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT2G05620.1p  transcript_id AT2G05620.1  protein_id AT2G05620.1p  transcript_id AT2G05620.1  
At2g05630	chr2:002084739	0.0	C/2084739-2084775,2083881-2083936,2083756-2083808,2083412-2083530,2083211-2083308	AT2G05630.1  CDS  gene_syn ATG8D, T20G20.2, T20G20_2  gene ATG8D  function in the Arabidopsis autophagy pathway  go_process autophagy|GO:0006914||ISS  go_function microtubule binding|GO:0008017||ISS  product autophagy 8d (APG8d)  note ATG8D; FUNCTIONS IN: microtubule binding; INVOLVED IN: autophagy; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: ATG8C (autophagy 8c); microtubule binding (TAIR:AT1G62040.1); Has 1161 Blast hits to 1159 proteins in 200 species: Archae - 0; Bacteria - 0; Metazoa - 578; Fungi - 124; Plants - 171; Viruses - 3; Other Eukaryotes - 285 (source: NCBI BLink).  protein_id AT2G05630.1p  transcript_id AT2G05630.1  protein_id AT2G05630.1p  transcript_id AT2G05630.1  
At2g05630	chr2:002084739	0.0	C/2084739-2084775,2084299-2084405,2084191-2084215,2083881-2083936,2083756-2083808,2083412-2083530,2083211-2083308	AT2G05630.2  CDS  gene_syn ATG8D, T20G20.2, T20G20_2  gene ATG8D  function in the Arabidopsis autophagy pathway  go_process autophagy|GO:0006914||ISS  go_function microtubule binding|GO:0008017||ISS  product autophagy 8d (APG8d)  note ATG8D; FUNCTIONS IN: microtubule binding; INVOLVED IN: autophagy; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: ATG8C (autophagy 8c); microtubule binding (TAIR:AT1G62040.1).  protein_id AT2G05630.2p  transcript_id AT2G05630.2  protein_id AT2G05630.2p  transcript_id AT2G05630.2  
At2g05632	chr2:002087744	0.0	C/2087744-2087902	AT2G05632.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G05632.1p  transcript_id AT2G05632.1  protein_id AT2G05632.1p  transcript_id AT2G05632.1  
At2g05635	chr2:002089484	0.0	W/2089484-2089521,2089716-2089897,2089973-2090054,2090149-2090224,2090392-2090454	AT2G05635.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function DNA binding|GO:0003677||IEA  go_function ATP-dependent DNA helicase activity|GO:0004003||IEA  go_function ATP binding|GO:0005524||IEA  go_process biological_process|GO:0008150||ND  product ATP binding / ATP-dependent DNA helicase/ DNA binding  note ATP binding / ATP-dependent DNA helicase/ DNA binding; FUNCTIONS IN: ATP-dependent DNA helicase activity, DNA binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: DEAD2 (InterPro:IPR010614); BEST Arabidopsis thaliana protein match is: ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding (TAIR:AT1G20720.1); Has 148 Blast hits to 148 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 116; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT2G05635.1p  transcript_id AT2G05635.1  protein_id AT2G05635.1p  transcript_id AT2G05635.1  
At2g05640	chr2:002091129	0.0	C/2091129-2097116	AT2G05640.1  mRNA_TE_gene  pseudo  gene_syn T20G20.1, T20G20_1  note Transposable element gene, pseudogene, similar to putative helicase, low similarity to SP|Q9UUA2 DNA repair and recombination protein pif1, mitochondrial precursor {Schizosaccharomyces pombe}; blastp match of 45% identity and 0. P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)}  
At2g05642	chr2:002100718	0.0	C/2100718-2100867,2100475-2100642,2100190-2100272,2099833-2100102,2099630-2099753,2099277-2099461,2099068-2099188,2098813-2098989,2098672-2098731,2098533-2098592,2098253-2098453	AT2G05642.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Protein of unknown function DUF223, Arabidopsis thaliana (InterPro:IPR003871); BEST Arabidopsis thaliana protein match is: replication protein-related (TAIR:AT1G52950.1); Has 317 Blast hits to 292 proteins in 67 species: Archae - 0; Bacteria - 13; Metazoa - 20; Fungi - 36; Plants - 193; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT2G05642.1p  transcript_id AT2G05642.1  protein_id AT2G05642.1p  transcript_id AT2G05642.1  
At2g05645	chr2:002101497	0.0	C/2101497-2102111	AT2G05645.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G05645.1p  transcript_id AT2G05645.1  protein_id AT2G05645.1p  transcript_id AT2G05645.1  
At2g05647	chr2:002104362	0.0	C/2104362-2104646	AT2G05647.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42680.1)  
At2g05660	chr2:002108121	0.0	C/2108121-2114699	AT2G05660.1  mRNA_TE_gene  pseudo  gene_syn T3P4.10  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 0. P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At2g05670	chr2:002115724	0.0	W/2115724-2116777	AT2G05670.1  pseudogenic_transcript  pseudo  gene_syn T3P4.9  note pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 31% identity and 8.6e-14 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}  
At2g05680	chr2:002122963	0.0	W/2122963-2125485	AT2G05680.1  mRNA_TE_gene  pseudo  gene_syn T3P4.8  note Transposable element gene, pseudogene, hypothetical protein  
At2g05690	chr2:002125593	0.0	C/2125593-2128107	AT2G05690.1  mRNA_TE_gene  pseudo  gene_syn T3P4.7  note Transposable element gene, Mutator-like transposase family, has a 2.9e-45 P-value blast match to O22273 /233-373 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g05700	chr2:002134584	0.0	W/2134584-2136771	AT2G05700.1  mRNA_TE_gene  pseudo  gene_syn T3P4.6  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 3.3e-45 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays)  
At2g05710	chr2:002141591	0.0	W/2141591-2141870,2141964-2142068,2142146-2142399,2142484-2142669,2142847-2143008,2143174-2143318,2143412-2143554,2143627-2143683,2143771-2143850,2143936-2144011,2144143-2144328,2144411-2144478,2144571-2144689,2144802-2144923,2145035-2145133,2145213-2145692,2145780-2145878,2145961-2146203,2146282-2146350	AT2G05710.1  CDS  gene_syn T3P4.5, T3P4_5  function Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.  go_component cell wall|GO:0005618|16287169|IDA  go_component mitochondrion|GO:0005739|17137349|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process response to oxidative stress|GO:0006979|12492832|IDA  go_process response to abscisic acid stimulus|GO:0009737|18768909|IEP  go_function aconitate hydratase activity|GO:0003994||ISS  product aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative  note aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative; FUNCTIONS IN: aconitate hydratase activity, ATP binding; INVOLVED IN: response to oxidative stress, response to cadmium ion, response to salt stress, response to abscisic acid stimulus; LOCATED IN: mitochondrion, cell wall, plasma membrane, chloroplast; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha (InterPro:IPR001030), Aconitase family, 4Fe-4S cluster binding site (InterPro:IPR018136), Aconitase A/isopropylmalate dehydratase small subunit, swivel (InterPro:IPR000573), Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 (InterPro:IPR015932), Aconitase/Iron regulatory protein 2/2-methylisocitrate dehydratase (InterPro:IPR015934), Aconitase-like core (InterPro:IPR015937), Aconitase/3-isopropylmalate dehydratase, swivel (InterPro:IPR015928), Aconitase/iron regulatory protein 2 (InterPro:IPR006249), Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomains 1 and 3 (InterPro:IPR015931); BEST Arabidopsis thaliana protein match is: aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO) (TAIR:AT4G35830.1); Has 15249 Blast hits to 15150 proteins in 1530 species: Archae - 341; Bacteria - 6102; Metazoa - 447; Fungi - 443; Plants - 131; Viruses - 0; Other Eukaryotes - 7785 (source: NCBI BLink).  protein_id AT2G05710.1p  transcript_id AT2G05710.1  protein_id AT2G05710.1p  transcript_id AT2G05710.1  
At2g05715	chr2:002146547	0.0	C/2146547-2147042	AT2G05715.1  pseudogenic_transcript  pseudo  note glutamyl-tRNA(Gln) amidotransferase B family protein, similar to SP|O30509 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (EC 6.3.5.-) (Asp/Glu-ADT subunit B) {Bacillus subtilis}; no suitable start codon was identified. This may be a pseudogene.  
At2g05720	chr2:002147192	0.0	W/2147192-2147627,2147821-2148215	AT2G05720.1  CDS  gene_syn T3P4.4, T3P4_4  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: shoot apex, petal, cauline leaf; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: EMB2776; nucleotide binding (TAIR:AT2G41500.1); Has 38354 Blast hits to 17693 proteins in 564 species: Archae - 60; Bacteria - 5383; Metazoa - 17036; Fungi - 7406; Plants - 3304; Viruses - 0; Other Eukaryotes - 5165 (source: NCBI BLink).  protein_id AT2G05720.1p  transcript_id AT2G05720.1  protein_id AT2G05720.1p  transcript_id AT2G05720.1  
At2g05730	chr2:002153050	0.0	C/2153050-2153413	AT2G05730.1  pseudogenic_transcript  pseudo  gene_syn T3P4.3  note putative cytosine DNA-methyltransferase, fragment/pseudogene, blastp match of 80% identity and 2.3e-23 P-value to GP|10257413|gb|AAG15406.1||AF229183 cytosine-5 DNA methyltransferase MET1 {Zea mays}  
At2g05740	chr2:002158245	0.0	C/2158245-2158727	AT2G05740.1  pseudogenic_transcript  pseudo  gene_syn T3P4.2  note pseudogene, fragment of cytosine DNA-methyltransferase, blastp match of 79% identity and 1.2e-21 P-value to GP|10257413|gb|AAG15406.1||AF229183 cytosine-5 DNA methyltransferase MET1 {Zea mays}  
At2g05750	chr2:002164357	0.0	W/2164357-2166858	AT2G05750.1  mRNA_TE_gene  pseudo  gene_syn T25M19.5, T25M19_5  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 2.9e-126 P-value blast match to GB:AAA66266 unknown protein ORF1 transposable element En-1 (CACTA-element) (Zea mays)  
At2g05752	chr2:002170445	0.0	C/2170445-2170528,2170209-2170364,2170041-2170109,2169487-2169687,2169305-2169388	AT2G05752.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24517.1); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G05752.1p  transcript_id AT2G05752.1  protein_id AT2G05752.1p  transcript_id AT2G05752.1  
At2g05755	chr2:002170905	0.0	W/2170905-2171108,2171313-2171466,2171781-2171955,2172178-2172293,2172391-2172450,2172573-2172711,2172814-2172880,2173044-2173115,2173206-2173271,2173494-2173646	AT2G05755.1  CDS  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  product integral membrane family protein  note integral membrane family protein; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); Has 3626 Blast hits to 3626 proteins in 569 species: Archae - 28; Bacteria - 1049; Metazoa - 210; Fungi - 97; Plants - 13; Viruses - 0; Other Eukaryotes - 2229 (source: NCBI BLink).  protein_id AT2G05755.1p  transcript_id AT2G05755.1  protein_id AT2G05755.1p  transcript_id AT2G05755.1  
At2g05753	chr2:002171846	0.0	C/2171846-2171936,2171630-2171718,2171468-2171512	AT2G05753.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT2G05753.1p  transcript_id AT2G05753.1  protein_id AT2G05753.1p  transcript_id AT2G05753.1  
At2g05760	chr2:002180978	0.0	W/2180978-2181053,2181289-2181386,2181460-2181636,2181715-2181815,2181895-2181970,2182050-2182109,2182199-2182386,2182464-2182560,2182657-2182743,2182842-2182900,2182979-2183070,2183171-2183248,2183337-2183710	AT2G05760.1  CDS  gene_syn T25M19.4, T25M19_4  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_function transmembrane transporter activity|GO:0022857||ISS  product xanthine/uracil permease family protein  note xanthine/uracil permease family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xanthine/uracil permease (InterPro:IPR006042), Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: xanthine/uracil permease family protein (TAIR:AT2G34190.1); Has 4770 Blast hits to 4747 proteins in 927 species: Archae - 37; Bacteria - 3412; Metazoa - 310; Fungi - 88; Plants - 286; Viruses - 1; Other Eukaryotes - 636 (source: NCBI BLink).  protein_id AT2G05760.1p  transcript_id AT2G05760.1  protein_id AT2G05760.1p  transcript_id AT2G05760.1  
At2g05765	chr2:002184567	0.0	C/2184567-2184645	AT2G05765.1  snoRNA  gene_syn 51184.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT2G05765.1  
At2g05770	chr2:002187280	0.0	C/2187280-2188403	AT2G05770.1  mRNA_TE_gene  pseudo  gene_syn T25M19.3  note Transposable element gene, pseudogene, similar to OSJNBb0043H09.1, blastp match of 30% identity and 1.6e-29 P-value to GP|21740634|emb|CAD40195.1||AL606611 OSJNBb0043H09.1 {Oryza sativa (japonica cultivar-group)}  
At2g05780	chr2:002193600	0.0	C/2193600-2196125	AT2G05780.1  mRNA_TE_gene  pseudo  gene_syn T25M19.2  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.5e-37 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At2g05786	chr2:002198271	0.0	C/2198271-2198405	AT2G05786.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G05786.1p  transcript_id AT2G05786.1  protein_id AT2G05786.1p  transcript_id AT2G05786.1  
At2g05790	chr2:002199450	0.0	W/2199450-2199510,2199629-2200951,2201259-2201293	AT2G05790.1  CDS  gene_syn T25M19.1, T25M19_1  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT5G55180.1); Has 1766 Blast hits to 1707 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 10; Plants - 1751; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT2G05790.1p  transcript_id AT2G05790.1  protein_id AT2G05790.1p  transcript_id AT2G05790.1  
At2g05800	chr2:002202628	0.0	W/2202628-2205721	AT2G05800.1  mRNA_TE_gene  pseudo  gene_syn T17C22.3  note Transposable element gene, Mutator-like transposase family, has a 3.1e-19 P-value blast match to Q9SJR8 /172-333 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g05801	chr2:002206724	0.0	C/2206724-2207100	AT2G05801.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G30520; unknown protein  
At2g05803	chr2:002208697	0.0	C/2208697-2208834	AT2G05803.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G05803.1p  transcript_id AT2G05803.1  protein_id AT2G05803.1p  transcript_id AT2G05803.1  
At2g05810	chr2:002215225	0.0	C/2215225-2216967	AT2G05810.1  CDS  gene_syn T17C22.4, T17C22_4  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  product armadillo/beta-catenin repeat family protein  note armadillo/beta-catenin repeat family protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein (TAIR:AT2G45720.2); Has 1817 Blast hits to 1273 proteins in 175 species: Archae - 0; Bacteria - 0; Metazoa - 475; Fungi - 219; Plants - 909; Viruses - 0; Other Eukaryotes - 214 (source: NCBI BLink).  protein_id AT2G05810.1p  transcript_id AT2G05810.1  protein_id AT2G05810.1p  transcript_id AT2G05810.1  
At2g05810	chr2:002215225	0.0	C/2215225-2216967	AT2G05810.2  CDS  gene_syn T17C22.4, T17C22_4  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  product armadillo/beta-catenin repeat family protein  note armadillo/beta-catenin repeat family protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein (TAIR:AT2G45720.2); Has 1817 Blast hits to 1273 proteins in 175 species: Archae - 0; Bacteria - 0; Metazoa - 475; Fungi - 219; Plants - 909; Viruses - 0; Other Eukaryotes - 214 (source: NCBI BLink).  protein_id AT2G05810.2p  transcript_id AT2G05810.2  protein_id AT2G05810.2p  transcript_id AT2G05810.2  
At2g05820	chr2:002220295	0.0	C/2220295-2220915	AT2G05820.1  mRNA_TE_gene  pseudo  gene_syn T17C22.1  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 6.4e-71 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At2g05830	chr2:002229759	0.0	W/2229759-2229830,2229911-2229966,2230041-2230199,2230283-2230382,2230468-2230610,2230801-2230906,2231176-2231314,2231410-2231678,2231759-2231839	AT2G05830.1  CDS  gene_syn T6P5.3, T6P5_3  go_process cellular metabolic process|GO:0044237||IEA  go_process cellular biosynthetic process|GO:0044249||IEA  go_component eukaryotic translation initiation factor 2B complex|GO:0005851||ISS  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  go_function GTP binding|GO:0005525||ISS  product eukaryotic translation initiation factor 2B family protein / eIF-2B family protein  note eukaryotic translation initiation factor 2B family protein / eIF-2B family protein; FUNCTIONS IN: GTP binding, translation initiation factor activity; INVOLVED IN: cellular biosynthetic process, translational initiation, cellular metabolic process; LOCATED IN: eukaryotic translation initiation factor 2B complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Putative translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase (InterPro:IPR005251), Initiation factor 2B related (InterPro:IPR000649), Initiation factor 2B alpha/beta/delta (InterPro:IPR011559); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 2B family protein / eIF-2B family protein (TAIR:AT3G07300.3); Has 3649 Blast hits to 3647 proteins in 608 species: Archae - 219; Bacteria - 965; Metazoa - 445; Fungi - 250; Plants - 116; Viruses - 0; Other Eukaryotes - 1654 (source: NCBI BLink).  protein_id AT2G05830.1p  transcript_id AT2G05830.1  protein_id AT2G05830.1p  transcript_id AT2G05830.1  
At2g05830	chr2:002229964	0.0	W/2229964-2229966,2230054-2230199,2230283-2230382,2230468-2230610,2230801-2230906,2231176-2231314,2231410-2231678,2231759-2231839	AT2G05830.4  CDS  gene_syn T6P5.3, T6P5_3  go_component endomembrane system|GO:0012505||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_process cellular biosynthetic process|GO:0044249||IEA  go_component eukaryotic translation initiation factor 2B complex|GO:0005851||ISS  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  go_function GTP binding|GO:0005525||ISS  product eukaryotic translation initiation factor 2B family protein / eIF-2B family protein  note eukaryotic translation initiation factor 2B family protein / eIF-2B family protein; FUNCTIONS IN: GTP binding, translation initiation factor activity; INVOLVED IN: cellular biosynthetic process, translational initiation, cellular metabolic process; LOCATED IN: endomembrane system, eukaryotic translation initiation factor 2B complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Putative translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase (InterPro:IPR005251), Initiation factor 2B related (InterPro:IPR000649), Initiation factor 2B alpha/beta/delta (InterPro:IPR011559); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 2B family protein / eIF-2B family protein (TAIR:AT3G07300.3); Has 3461 Blast hits to 3461 proteins in 607 species: Archae - 219; Bacteria - 963; Metazoa - 442; Fungi - 248; Plants - 116; Viruses - 0; Other Eukaryotes - 1473 (source: NCBI BLink).  protein_id AT2G05830.4p  transcript_id AT2G05830.4  protein_id AT2G05830.4p  transcript_id AT2G05830.4  
At2g05830	chr2:002230057	0.0	W/2230057-2230199,2230283-2230382,2230468-2230610,2230801-2230906,2231176-2231314,2231410-2231678,2231759-2231839	AT2G05830.2  CDS  gene_syn T6P5.3, T6P5_3  go_component endomembrane system|GO:0012505||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_process cellular biosynthetic process|GO:0044249||IEA  go_component eukaryotic translation initiation factor 2B complex|GO:0005851||ISS  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  go_function GTP binding|GO:0005525||ISS  product eukaryotic translation initiation factor 2B family protein / eIF-2B family protein  note eukaryotic translation initiation factor 2B family protein / eIF-2B family protein; FUNCTIONS IN: GTP binding, translation initiation factor activity; INVOLVED IN: cellular biosynthetic process, translational initiation, cellular metabolic process; LOCATED IN: endomembrane system, eukaryotic translation initiation factor 2B complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Putative translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase (InterPro:IPR005251), Initiation factor 2B related (InterPro:IPR000649), Initiation factor 2B alpha/beta/delta (InterPro:IPR011559); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 2B family protein / eIF-2B family protein (TAIR:AT3G07300.3); Has 3460 Blast hits to 3460 proteins in 607 species: Archae - 219; Bacteria - 963; Metazoa - 442; Fungi - 248; Plants - 116; Viruses - 0; Other Eukaryotes - 1472 (source: NCBI BLink).  protein_id AT2G05830.2p  transcript_id AT2G05830.2  protein_id AT2G05830.2p  transcript_id AT2G05830.2  
At2g05830	chr2:002230057	0.0	W/2230057-2230199,2230283-2230382,2230468-2230610,2230801-2230906,2231176-2231314,2231410-2231678,2231759-2231839	AT2G05830.3  CDS  gene_syn T6P5.3, T6P5_3  go_component endomembrane system|GO:0012505||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_process cellular biosynthetic process|GO:0044249||IEA  go_component eukaryotic translation initiation factor 2B complex|GO:0005851||ISS  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  go_function GTP binding|GO:0005525||ISS  product eukaryotic translation initiation factor 2B family protein / eIF-2B family protein  note eukaryotic translation initiation factor 2B family protein / eIF-2B family protein; FUNCTIONS IN: GTP binding, translation initiation factor activity; INVOLVED IN: cellular biosynthetic process, translational initiation, cellular metabolic process; LOCATED IN: endomembrane system, eukaryotic translation initiation factor 2B complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Putative translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase (InterPro:IPR005251), Initiation factor 2B related (InterPro:IPR000649), Initiation factor 2B alpha/beta/delta (InterPro:IPR011559); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 2B family protein / eIF-2B family protein (TAIR:AT3G07300.3); Has 3460 Blast hits to 3460 proteins in 607 species: Archae - 219; Bacteria - 963; Metazoa - 442; Fungi - 248; Plants - 116; Viruses - 0; Other Eukaryotes - 1472 (source: NCBI BLink).  protein_id AT2G05830.3p  transcript_id AT2G05830.3  protein_id AT2G05830.3p  transcript_id AT2G05830.3  
At2g05840	chr2:002234226	0.0	W/2234226-2234301,2234384-2234478,2234560-2234641,2234706-2234802,2234878-2234936,2235019-2235101,2235408-2235503,2235693-2235752,2235961-2236053	AT2G05840.1  CDS  gene_syn 20S PROTEASOME SUBUNIT PAA2, PAA2, T6P5.4, T6P5_4  gene PAA2  function Encodes 20S proteasome subunit PAA2 (PAA2).  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_function endopeptidase activity|GO:0004175||IEA  go_function threonine-type endopeptidase activity|GO:0004298||IEA  go_component proteasome core complex|GO:0005839|9373170|TAS  go_component proteasome core complex|GO:0005839|9611183|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_function peptidase activity|GO:0008233||ISS  product PAA2 (20S PROTEASOME SUBUNIT PAA2); endopeptidase/ peptidase/ threonine-type endopeptidase  note 20S PROTEASOME SUBUNIT PAA2 (PAA2); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, cytosolic ribosome; EXPRESSED IN: fruit, guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Proteasome alpha-subunit, conserved site (InterPro:IPR000426), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: PAA1 (PROTEASOME ALPHA SUBUNIT A 1); endopeptidase/ peptidase/ threonine-type endopeptidase (TAIR:AT5G35590.1); Has 3798 Blast hits to 3798 proteins in 330 species: Archae - 418; Bacteria - 0; Metazoa - 1388; Fungi - 864; Plants - 460; Viruses - 0; Other Eukaryotes - 668 (source: NCBI BLink).  protein_id AT2G05840.1p  transcript_id AT2G05840.1  protein_id AT2G05840.1p  transcript_id AT2G05840.1  
At2g05840	chr2:002234226	0.0	W/2234226-2234301,2234384-2234478,2234560-2234641,2234706-2234802,2234878-2234936,2235019-2235101,2235408-2235503,2235693-2235754,2235961-2235973	AT2G05840.2  CDS  gene_syn 20S PROTEASOME SUBUNIT PAA2, PAA2, T6P5.4, T6P5_4  gene PAA2  function Encodes 20S proteasome subunit PAA2 (PAA2).  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_function endopeptidase activity|GO:0004175||IEA  go_function threonine-type endopeptidase activity|GO:0004298||IEA  go_component proteasome core complex|GO:0005839|9373170|TAS  go_component proteasome core complex|GO:0005839|9611183|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_function peptidase activity|GO:0008233||ISS  product PAA2 (20S PROTEASOME SUBUNIT PAA2); endopeptidase/ peptidase/ threonine-type endopeptidase  note 20S PROTEASOME SUBUNIT PAA2 (PAA2); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, cytosolic ribosome; EXPRESSED IN: fruit, guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Proteasome alpha-subunit, conserved site (InterPro:IPR000426), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: PAA1 (PROTEASOME ALPHA SUBUNIT A 1); endopeptidase/ peptidase/ threonine-type endopeptidase (TAIR:AT5G35590.1); Has 3774 Blast hits to 3774 proteins in 328 species: Archae - 416; Bacteria - 0; Metazoa - 1381; Fungi - 862; Plants - 458; Viruses - 0; Other Eukaryotes - 657 (source: NCBI BLink).  protein_id AT2G05840.2p  transcript_id AT2G05840.2  protein_id AT2G05840.2p  transcript_id AT2G05840.2  
At2g05845	chr2:002236521	0.0	C/2236521-2238590	AT2G05845.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 4.3e-45 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)  
At2g05850	chr2:002244115	0.0	C/2244115-2244460,2243889-2243996,2242774-2243783	AT2G05850.1  CDS  gene_syn T6P5.5, T6P5_5, scpl38, serine carboxypeptidase-like 38  gene scpl38  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl38 (serine carboxypeptidase-like 38); serine-type carboxypeptidase  note serine carboxypeptidase-like 38 (scpl38); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl36 (serine carboxypeptidase-like 36); serine-type carboxypeptidase (TAIR:AT3G52000.1); Has 2539 Blast hits to 2487 proteins in 305 species: Archae - 0; Bacteria - 185; Metazoa - 569; Fungi - 554; Plants - 884; Viruses - 0; Other Eukaryotes - 347 (source: NCBI BLink).  protein_id AT2G05850.1p  transcript_id AT2G05850.1  protein_id AT2G05850.1p  transcript_id AT2G05850.1  
At2g05860	chr2:002246959	0.0	C/2246959-2248108	AT2G05860.1  mRNA_TE_gene  pseudo  gene_syn T6P5.6, T6P5_6  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07310.1); similar to hypothetical protein 31.t00082 [Brassica oleracea] (GB:ABD65101.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At2g05870	chr2:002249081	0.0	C/2249081-2249999	AT2G05870.1  mRNA_TE_gene  pseudo  gene_syn T6P5.7, T6P5_7  note Transposable element gene, similar to cytochrome P-450 aromatase-related [Arabidopsis thaliana] (TAIR:AT4G07435.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At2g05880	chr2:002251716	0.0	C/2251716-2252970	AT2G05880.1  mRNA_TE_gene  pseudo  gene_syn T6P5.8, T6P5_8  note Transposable element gene, similar to replication protein-related [Arabidopsis thaliana] (TAIR:AT5G35260.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At2g05890	chr2:002253935	0.0	C/2253935-2256078	AT2G05890.1  mRNA_TE_gene  pseudo  gene_syn T6P5.9, T6P5_9  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30550.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07450.1); similar to hypothetical protein 31.t00031 [Brassica oleracea] (GB:ABD65118.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At2g05900	chr2:002256970	0.0	W/2256970-2257908	AT2G05900.1  CDS  gene_syn SDG11, SET DOMAIN-CONTAINING PROTEIN 11, SUVH10, SUVH9:SU(VAR)3-9 HOMOLOG 10, T6P5.10, T6P5_10  gene SDG11  function Predicted to encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain.  go_component nucleus|GO:0005634||IEA  go_process chromatin modification|GO:0016568||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function histone-lysine N-methyltransferase activity|GO:0018024||IEA  product SDG11 (SET DOMAIN-CONTAINING PROTEIN 11); histone-lysine N-methyltransferase/ zinc ion binding  note SET DOMAIN-CONTAINING PROTEIN 11 (SDG11); FUNCTIONS IN: zinc ion binding, histone-lysine N-methyltransferase activity; INVOLVED IN: chromatin modification; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), SRA-YDG (InterPro:IPR003105), Post-SET zinc-binding region (InterPro:IPR003616), Pre-SET zinc-binding region (InterPro:IPR007728); BEST Arabidopsis thaliana protein match is: SUVH3 (SU(VAR)3-9 HOMOLOG 3); histone methyltransferase (TAIR:AT1G73100.1); Has 2044 Blast hits to 1909 proteins in 203 species: Archae - 0; Bacteria - 63; Metazoa - 1091; Fungi - 213; Plants - 487; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink).  protein_id AT2G05900.1p  transcript_id AT2G05900.1  protein_id AT2G05900.1p  transcript_id AT2G05900.1  
At2g05910	chr2:002259161	0.0	C/2259161-2259376,2258512-2258871	AT2G05910.1  CDS  gene_syn T6P5.11, T6P5_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G20640.1); Has 150 Blast hits to 150 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G05910.1p  transcript_id AT2G05910.1  protein_id AT2G05910.1p  transcript_id AT2G05910.1  
At2g05915	chr2:002263816	0.0	W/2263816-2263873,2263973-2264265	AT2G05915.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G05915.1p  transcript_id AT2G05915.1  protein_id AT2G05915.1p  transcript_id AT2G05915.1  
At2g05920	chr2:002270608	0.0	C/2270608-2272207,2269831-2270495	AT2G05920.1  CDS  gene_syn T6P5.12, T6P5_12  go_component cell wall|GO:0005618|14595688|IDA  go_component cell wall|GO:0005618|15593128|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product subtilase family protein  note subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: ARA12; serine-type endopeptidase (TAIR:AT5G67360.1); Has 4370 Blast hits to 3848 proteins in 648 species: Archae - 130; Bacteria - 2232; Metazoa - 135; Fungi - 512; Plants - 867; Viruses - 0; Other Eukaryotes - 494 (source: NCBI BLink).  protein_id AT2G05920.1p  transcript_id AT2G05920.1  protein_id AT2G05920.1p  transcript_id AT2G05920.1  
At2g05930	chr2:002274783	0.0	W/2274783-2277843	AT2G05930.1  mRNA_TE_gene  pseudo  gene_syn T6P5.13, T6P5_13  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At2g05935	chr2:002278835	0.0	W/2278835-2282788	AT2G05935.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 3.9e-28 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)  
At2g05940	chr2:002288863	0.0	C/2288863-2289270,2288650-2288785,2288409-2288545,2287514-2288221	AT2G05940.1  CDS  gene_syn T6P5.14, T6P5_14  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT5G35580.1); Has 81759 Blast hits to 80813 proteins in 2296 species: Archae - 48; Bacteria - 7409; Metazoa - 35930; Fungi - 6135; Plants - 18274; Viruses - 339; Other Eukaryotes - 13624 (source: NCBI BLink).  protein_id AT2G05940.1p  transcript_id AT2G05940.1  protein_id AT2G05940.1p  transcript_id AT2G05940.1  
At2g05950	chr2:002297816	0.0	W/2297816-2298721	AT2G05950.1  mRNA_TE_gene  pseudo  gene_syn T6P5.15, T6P5_15  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G32050.1); similar to transposon-like ORF [Brassica rapa] (GB:BAA85462.1)  
At2g05960	chr2:002302803	0.0	W/2302803-2307974	AT2G05960.1  mRNA_TE_gene  pseudo  gene_syn T6P5.16, T6P5_16  note Transposable element gene, copia-like retrotransposon family, has a 6.2e-200 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At2g05970	chr2:002308651	0.0	C/2308651-2309784	AT2G05970.1  CDS  gene_syn T6P5.17, T6P5_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G17565.1); Has 295 Blast hits to 283 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 295; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G05970.1p  transcript_id AT2G05970.1  protein_id AT2G05970.1p  transcript_id AT2G05970.1  
At2g05980	chr2:002313803	0.0	C/2313803-2317933	AT2G05980.1  mRNA_TE_gene  pseudo  gene_syn T6P5.18, T6P5_18  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.0e-42 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)  
At2g05985	chr2:002318272	0.0	W/2318272-2319705	AT2G05985.1  mRNA_TE_gene  pseudo  note Transposable element gene, hypothetical protein  
At2g05990	chr2:002322876	0.0	W/2322876-2323155,2323231-2323340,2323420-2323475,2323549-2323681,2323759-2323833,2323922-2324033,2324109-2324160,2324261-2324312,2324393-2324450,2324543-2324641,2324722-2324867	AT2G05990.1  CDS  gene_syn ENOYL-ACP REDUCTASE, ENOYL-ACP REDUCTASE 1, ENR1, MOD1, MOSAIC DEATH 1, T6P5.19, T6P5_19  gene MOD1  function Encodes enoyl-ACP reductase a component of the fatty acid synthase complex. A reduced function mutation in this gene, mod1, was found in a screen for premature cell death mutants. Mutant plants have reduced lipid level and pleiotropic morphological defects, including chlorotic and abnormally shaped leaves.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component fatty acid synthase complex|GO:0005835|10715326|TAS  go_process fatty acid biosynthetic process|GO:0006633|10715326|IMP  go_function enoyl-[acyl-carrier-protein] reductase (NADH) activity|GO:0004318|1912503|ISS  go_function oxidoreductase activity|GO:0016491||ISS  go_function enoyl-[acyl-carrier-protein] reductase activity|GO:0016631|10715326|IMP  product MOD1 (MOSAIC DEATH 1); enoyl-[acyl-carrier-protein] reductase (NADH)/ enoyl-[acyl-carrier-protein] reductase/ oxidoreductase  note MOSAIC DEATH 1 (MOD1); FUNCTIONS IN: enoyl-[acyl-carrier-protein] reductase (NADH) activity, oxidoreductase activity, enoyl-[acyl-carrier-protein] reductase activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: fatty acid synthase complex, thylakoid, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198), Enoyl-[acyl-carrier-protein] reductase (NADH) (InterPro:IPR014358); Has 23007 Blast hits to 22997 proteins in 1570 species: Archae - 131; Bacteria - 14374; Metazoa - 579; Fungi - 396; Plants - 398; Viruses - 0; Other Eukaryotes - 7129 (source: NCBI BLink).  protein_id AT2G05990.1p  transcript_id AT2G05990.1  protein_id AT2G05990.1p  transcript_id AT2G05990.1  
At2g05990	chr2:002322876	0.0	W/2322876-2323155,2323231-2323340,2323420-2323475,2323549-2323681,2323759-2323833,2323922-2324033,2324109-2324160,2324261-2324312,2324393-2324450,2324543-2324641,2324722-2324867	AT2G05990.2  CDS  gene_syn ENOYL-ACP REDUCTASE, ENOYL-ACP REDUCTASE 1, ENR1, MOD1, MOSAIC DEATH 1, T6P5.19, T6P5_19  gene MOD1  function Encodes enoyl-ACP reductase a component of the fatty acid synthase complex. A reduced function mutation in this gene, mod1, was found in a screen for premature cell death mutants. Mutant plants have reduced lipid level and pleiotropic morphological defects, including chlorotic and abnormally shaped leaves.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component fatty acid synthase complex|GO:0005835|10715326|TAS  go_process fatty acid biosynthetic process|GO:0006633|10715326|IMP  go_function enoyl-[acyl-carrier-protein] reductase (NADH) activity|GO:0004318|1912503|ISS  go_function oxidoreductase activity|GO:0016491||ISS  go_function enoyl-[acyl-carrier-protein] reductase activity|GO:0016631|10715326|IMP  product MOD1 (MOSAIC DEATH 1); enoyl-[acyl-carrier-protein] reductase (NADH)/ enoyl-[acyl-carrier-protein] reductase/ oxidoreductase  note MOSAIC DEATH 1 (MOD1); FUNCTIONS IN: enoyl-[acyl-carrier-protein] reductase (NADH) activity, oxidoreductase activity, enoyl-[acyl-carrier-protein] reductase activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: fatty acid synthase complex, thylakoid, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198), Enoyl-[acyl-carrier-protein] reductase (NADH) (InterPro:IPR014358); Has 23007 Blast hits to 22997 proteins in 1570 species: Archae - 131; Bacteria - 14374; Metazoa - 579; Fungi - 396; Plants - 398; Viruses - 0; Other Eukaryotes - 7129 (source: NCBI BLink).  protein_id AT2G05990.2p  transcript_id AT2G05990.2  protein_id AT2G05990.2p  transcript_id AT2G05990.2  
At2g05995	chr2:002325776	0.0	W/2325776-2326876	AT2G05995.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G05995.1  
At2g06000	chr2:002328000	0.0	C/2328000-2329610	AT2G06000.1  CDS  gene_syn T6P5.20, T6P5_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G09900.1); Has 21558 Blast hits to 5826 proteins in 169 species: Archae - 4; Bacteria - 18; Metazoa - 474; Fungi - 383; Plants - 19917; Viruses - 0; Other Eukaryotes - 762 (source: NCBI BLink).  protein_id AT2G06000.1p  transcript_id AT2G06000.1  protein_id AT2G06000.1p  transcript_id AT2G06000.1  
At2g06000	chr2:002328000	0.0	C/2328000-2329610	AT2G06000.2  CDS  gene_syn T6P5.20, T6P5_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G09900.1); Has 21558 Blast hits to 5826 proteins in 169 species: Archae - 4; Bacteria - 18; Metazoa - 474; Fungi - 383; Plants - 19917; Viruses - 0; Other Eukaryotes - 762 (source: NCBI BLink).  protein_id AT2G06000.2p  transcript_id AT2G06000.2  protein_id AT2G06000.2p  transcript_id AT2G06000.2  
At2g06002	chr2:002330776	0.0	W/2330776-2331479	AT2G06002.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G06002.1  
At2g06005	chr2:002332583	0.0	W/2332583-2332638,2332819-2332906,2332987-2333095,2333688-2333737,2333909-2333975,2334362-2334434,2334567-2334622,2334883-2334979,2335077-2335158,2335300-2335362,2335446-2335505,2335588-2335680,2335769-2335831,2335912-2336022	AT2G06005.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: stem, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G20580.2); Has 264 Blast hits to 258 proteins in 82 species: Archae - 0; Bacteria - 24; Metazoa - 111; Fungi - 17; Plants - 31; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).  protein_id AT2G06005.1p  transcript_id AT2G06005.1  protein_id AT2G06005.1p  transcript_id AT2G06005.1  
At2g06005	chr2:002333023	0.0	W/2333023-2333095,2333688-2333737,2333909-2333975,2334362-2334434,2334567-2334622,2334922-2334979,2335077-2335158,2335300-2335362,2335446-2335505,2335588-2335680,2335769-2335831,2335912-2336022	AT2G06005.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G20580.2); Has 221 Blast hits to 217 proteins in 71 species: Archae - 0; Bacteria - 19; Metazoa - 78; Fungi - 19; Plants - 32; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT2G06005.2p  transcript_id AT2G06005.2  protein_id AT2G06005.2p  transcript_id AT2G06005.2  
At2g06010	chr2:002336841	0.0	W/2336841-2336975,2337804-2337956,2338033-2338208,2338289-2338391	AT2G06010.1  CDS  gene_syn F5K7.23, F5K7_23, OBP3-RESPONSIVE GENE 4, ORG4  gene ORG4  function encodes a novel protein whose expression level is induced in lines overexpressing salicylic-acid (SA)-inducible Arabidopsis DNA binding with one finger (Dof) transcription factor, called OBF-binding protein 3.  go_component cellular_component|GO:0005575||ND  go_process response to salicylic acid stimulus|GO:0009751|12887587|IEP  go_function molecular_function|GO:0003674||ND  product ORG4 (OBP3-RESPONSIVE GENE 4)  note OBP3-RESPONSIVE GENE 4 (ORG4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salicylic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G06010.1p  transcript_id AT2G06010.1  protein_id AT2G06010.1p  transcript_id AT2G06010.1  
At2g06020	chr2:002342535	0.0	W/2342535-2342865,2344017-2344093,2344235-2344289,2345653-2345783,2345896-2346207	AT2G06020.1  CDS  gene_syn F5K7.22, F5K7_22  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: UNE16 (unfertilized embryo sac 16); transcription factor (TAIR:AT4G13640.2); Has 854 Blast hits to 853 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 848; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT2G06020.1p  transcript_id AT2G06020.1  protein_id AT2G06020.1p  transcript_id AT2G06020.1  
At2g06025	chr2:002350231	0.0	W/2350231-2350539,2350622-2350674,2350897-2350933,2351030-2351095,2351207-2351311,2351395-2351548,2351672-2351748,2351833-2351898	AT2G06025.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product GCN5-related N-acetyltransferase (GNAT) family protein  note GCN5-related N-acetyltransferase (GNAT) family protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: GCN5-related N-acetyltransferase (GNAT) family protein (TAIR:AT4G28030.1); Has 565 Blast hits to 565 proteins in 223 species: Archae - 42; Bacteria - 278; Metazoa - 79; Fungi - 29; Plants - 83; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT2G06025.1p  transcript_id AT2G06025.1  protein_id AT2G06025.1p  transcript_id AT2G06025.1  
At2g06040	chr2:002354055	0.0	C/2354055-2355419,2353370-2353803,2353122-2353283,2352754-2352829,2352519-2352674,2352333-2352428	AT2G06040.1  CDS  gene_syn F5K7.20, F5K7_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G21900.1); Has 3642 Blast hits to 1885 proteins in 175 species: Archae - 0; Bacteria - 109; Metazoa - 2066; Fungi - 492; Plants - 697; Viruses - 0; Other Eukaryotes - 278 (source: NCBI BLink).  protein_id AT2G06040.1p  transcript_id AT2G06040.1  protein_id AT2G06040.1p  transcript_id AT2G06040.1  
At2g06045	chr2:002358727	0.0	W/2358727-2359113	AT2G06045.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.2e-12 P-value blast match to GB:AAC02672 polyprotein (Ty1_Copia-element) (Arabidopsis arenosa)  
At2g06050	chr2:002361895	0.0	C/2361895-2361971,2361678-2361818,2360148-2360278,2359240-2360066	AT2G06050.1  CDS  gene_syn 12-OXO-PHYTODIENOATE REDUCTASE, 12-OXOPHYTODIENOATE-10,11-REDUCTASE, F5K7.19, F5K7_19, OPDA-REDUCTASE 3, OPR3  gene OPR3  function Encodes a 12-oxophytodienoate reductase that is required for jasmonate biosynthesis. Mutants are male sterile and defective in pollen dehiscence.  go_component peroxisome|GO:0005777|17951448|IDA  go_process response to wounding|GO:0009611|11094980|IEP  go_process response to wounding|GO:0009611|11094980|IGI  go_process response to fungus|GO:0009620|19220788|IEP  go_process jasmonic acid biosynthetic process|GO:0009695|10899973|IMP  go_process jasmonic acid biosynthetic process|GO:0009695|10973494|IMP  go_process jasmonic acid biosynthetic process|GO:0009695|10973494|TAS  go_process response to jasmonic acid stimulus|GO:0009753|11094980|IEP  go_process response to ozone|GO:0010193|16262714|IEP  go_function 12-oxophytodienoate reductase activity|GO:0016629|10899973|IMP  go_function 12-oxophytodienoate reductase activity|GO:0016629|10973494|IMP  go_function 12-oxophytodienoate reductase activity|GO:0016629|11094980|IDA  product OPR3 (OPDA-REDUCTASE 3); 12-oxophytodienoate reductase  note OPDA-REDUCTASE 3 (OPR3); FUNCTIONS IN: 12-oxophytodienoate reductase activity; INVOLVED IN: response to jasmonic acid stimulus, response to fungus, jasmonic acid biosynthetic process, response to wounding, response to ozone; LOCATED IN: peroxisome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), NADH:flavin oxidoreductase/NADH oxidase, N-terminal (InterPro:IPR001155); BEST Arabidopsis thaliana protein match is: OPR2 (TAIR:AT1G76690.1); Has 8186 Blast hits to 8163 proteins in 1108 species: Archae - 62; Bacteria - 5430; Metazoa - 31; Fungi - 546; Plants - 297; Viruses - 0; Other Eukaryotes - 1820 (source: NCBI BLink).  protein_id AT2G06050.1p  transcript_id AT2G06050.1  protein_id AT2G06050.1p  transcript_id AT2G06050.1  
At2g06050	chr2:002361895	0.0	C/2361895-2361971,2361678-2361818,2360148-2360278,2359240-2360066	AT2G06050.2  CDS  gene_syn 12-OXO-PHYTODIENOATE REDUCTASE, 12-OXOPHYTODIENOATE-10,11-REDUCTASE, F5K7.19, F5K7_19, OPDA-REDUCTASE 3, OPR3  gene OPR3  function Encodes a 12-oxophytodienoate reductase that is required for jasmonate biosynthesis. Mutants are male sterile and defective in pollen dehiscence.  go_component peroxisome|GO:0005777|17951448|IDA  go_process response to wounding|GO:0009611|11094980|IEP  go_process response to wounding|GO:0009611|11094980|IGI  go_process response to fungus|GO:0009620|19220788|IEP  go_process jasmonic acid biosynthetic process|GO:0009695|10899973|IMP  go_process jasmonic acid biosynthetic process|GO:0009695|10973494|IMP  go_process jasmonic acid biosynthetic process|GO:0009695|10973494|TAS  go_process response to jasmonic acid stimulus|GO:0009753|11094980|IEP  go_process response to ozone|GO:0010193|16262714|IEP  go_function 12-oxophytodienoate reductase activity|GO:0016629|10899973|IMP  go_function 12-oxophytodienoate reductase activity|GO:0016629|10973494|IMP  go_function 12-oxophytodienoate reductase activity|GO:0016629|11094980|IDA  product OPR3 (OPDA-REDUCTASE 3); 12-oxophytodienoate reductase  note OPDA-REDUCTASE 3 (OPR3); FUNCTIONS IN: 12-oxophytodienoate reductase activity; INVOLVED IN: response to jasmonic acid stimulus, response to fungus, jasmonic acid biosynthetic process, response to wounding, response to ozone; LOCATED IN: peroxisome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), NADH:flavin oxidoreductase/NADH oxidase, N-terminal (InterPro:IPR001155); BEST Arabidopsis thaliana protein match is: OPR2 (TAIR:AT1G76690.1); Has 8186 Blast hits to 8163 proteins in 1108 species: Archae - 62; Bacteria - 5430; Metazoa - 31; Fungi - 546; Plants - 297; Viruses - 0; Other Eukaryotes - 1820 (source: NCBI BLink).  protein_id AT2G06050.2p  transcript_id AT2G06050.2  protein_id AT2G06050.2p  transcript_id AT2G06050.2  
At2g06050	chr2:002361895	0.0	C/2361895-2361971,2361678-2361818,2360148-2360278,2359240-2360066	AT2G06050.3  CDS  gene_syn 12-OXO-PHYTODIENOATE REDUCTASE, 12-OXOPHYTODIENOATE-10,11-REDUCTASE, F5K7.19, F5K7_19, OPDA-REDUCTASE 3, OPR3  gene OPR3  function Encodes a 12-oxophytodienoate reductase that is required for jasmonate biosynthesis. Mutants are male sterile and defective in pollen dehiscence.  go_component peroxisome|GO:0005777|17951448|IDA  go_process response to wounding|GO:0009611|11094980|IEP  go_process response to wounding|GO:0009611|11094980|IGI  go_process response to fungus|GO:0009620|19220788|IEP  go_process jasmonic acid biosynthetic process|GO:0009695|10899973|IMP  go_process jasmonic acid biosynthetic process|GO:0009695|10973494|IMP  go_process jasmonic acid biosynthetic process|GO:0009695|10973494|TAS  go_process response to jasmonic acid stimulus|GO:0009753|11094980|IEP  go_process response to ozone|GO:0010193|16262714|IEP  go_function 12-oxophytodienoate reductase activity|GO:0016629|10899973|IMP  go_function 12-oxophytodienoate reductase activity|GO:0016629|10973494|IMP  go_function 12-oxophytodienoate reductase activity|GO:0016629|11094980|IDA  product OPR3 (OPDA-REDUCTASE 3); 12-oxophytodienoate reductase  note OPDA-REDUCTASE 3 (OPR3); FUNCTIONS IN: 12-oxophytodienoate reductase activity; INVOLVED IN: response to jasmonic acid stimulus, response to fungus, jasmonic acid biosynthetic process, response to wounding, response to ozone; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), NADH:flavin oxidoreductase/NADH oxidase, N-terminal (InterPro:IPR001155); BEST Arabidopsis thaliana protein match is: OPR2 (TAIR:AT1G76690.1); Has 8186 Blast hits to 8163 proteins in 1108 species: Archae - 62; Bacteria - 5430; Metazoa - 31; Fungi - 546; Plants - 297; Viruses - 0; Other Eukaryotes - 1820 (source: NCBI BLink).  protein_id AT2G06050.3p  transcript_id AT2G06050.3  protein_id AT2G06050.3p  transcript_id AT2G06050.3  
At2g06060	chr2:002364271	0.0	W/2364271-2365961	AT2G06060.1  mRNA_TE_gene  pseudo  gene_syn F5K7.18  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 6.7e-05 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)  
At2g06070	chr2:002366146	0.0	W/2366146-2369342	AT2G06070.1  mRNA_TE_gene  pseudo  gene_syn F5K7.17  note Transposable element gene, copia-like retrotransposon family, has a 4.1e-114 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At2g06080	chr2:002369630	0.0	W/2369630-2371361	AT2G06080.1  mRNA_TE_gene  pseudo  gene_syn F5K7.16  note Transposable element gene, pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 38% identity and 7.7e-40 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}  
At2g06090	chr2:002371607	0.0	C/2371607-2372014	AT2G06090.1  CDS  gene_syn F5K7.15, F5K7_15  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product self-incompatibility protein-related  note self-incompatibility protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27238.1); Has 81 Blast hits to 81 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G06090.1p  transcript_id AT2G06090.1  protein_id AT2G06090.1p  transcript_id AT2G06090.1  
At2g06095	chr2:002373778	0.0	W/2373778-2373915,2374316-2374528	AT2G06095.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 9 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G06095.1p  transcript_id AT2G06095.1  protein_id AT2G06095.1p  transcript_id AT2G06095.1  
At2g06100	chr2:002375867	0.0	W/2375867-2378098	AT2G06100.1  mRNA_TE_gene  pseudo  gene_syn F5K7.14  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.2e-68 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g06110	chr2:002378200	0.0	C/2378200-2381130	AT2G06110.1  mRNA_TE_gene  pseudo  gene_syn F5K7.13, F5K7_13  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 6.4e-72 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g06120	chr2:002383060	0.0	W/2383060-2384982	AT2G06120.1  mRNA_TE_gene  pseudo  gene_syn F5K7.12, F5K7_12  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15600.1); similar to RPGR ORF15 isoform [Xenopus laevis] (GB:ABB03734.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048)  
At2g06125	chr2:002385512	0.0	C/2385512-2386021	AT2G06125.1  mRNA_TE_gene  pseudo  note Transposable element gene, hypothetical protein  
At2g06130	chr2:002387605	0.0	C/2387605-2389725	AT2G06130.1  mRNA_TE_gene  pseudo  gene_syn F5K7.11, F5K7_11  note Transposable element gene, Mutator-like transposase family, has a 2.7e-30 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g06140	chr2:002392860	0.0	W/2392860-2394904	AT2G06140.1  mRNA_TE_gene  pseudo  gene_syn F5K7.10, F5K7_10  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32605.1); similar to erythrocyte membrane-associated (GB:XP_731351.1); contains InterPro domain Prefoldin; (InterPro:IPR009053)  
At2g06150	chr2:002402284	0.0	C/2402284-2405055	AT2G06150.1  mRNA_TE_gene  pseudo  gene_syn F5K7.9, F5K7_9  note Transposable element gene, pseudogene, hypothetical protein  
At2g06160	chr2:002405456	0.0	C/2405456-2408255	AT2G06160.1  mRNA_TE_gene  pseudo  gene_syn F5K7.8, F5K7_8  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 0. P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g06165	chr2:002409742	0.0	C/2409742-2410485	AT2G06165.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g06166	chr2:002411005	0.0	W/2411005-2411059,2411400-2411656	AT2G06166.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17718.1); Has 11 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G06166.1p  transcript_id AT2G06166.1  protein_id AT2G06166.1p  transcript_id AT2G06166.1  
At2g06170	chr2:002415160	0.0	W/2415160-2418279	AT2G06170.1  mRNA_TE_gene  pseudo  gene_syn F5K7.7, F5K7_7  note Transposable element gene, gypsy-like retrotransposon family, has a 1.7e-91 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At2g06180	chr2:002419319	0.0	C/2419319-2422450	AT2G06180.1  mRNA_TE_gene  pseudo  gene_syn F5K7.6, F5K7_6  note Transposable element gene, pseudogene, hypothetical protein  
At2g06190	chr2:002423152	0.0	W/2423152-2424091	AT2G06190.1  mRNA_TE_gene  pseudo  gene_syn F5K7.5, F5K7_5  note Transposable element gene, gypsy-like retrotransposon family, has a 5.2e-36 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus)  
At2g06200	chr2:002426340	0.0	W/2426340-2426535,2426629-2426848,2426937-2427255	AT2G06200.1  CDS  gene_syn AtGRF6, F5K7.4, F5K7_4, GROWTH-REGULATING FACTOR 6  gene AtGRF6  function Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flower  go_component nucleus|GO:0005634|12974814|ISS  go_process leaf development|GO:0048366|12974814|TAS  go_function transcription activator activity|GO:0016563|12974814|ISS  product AtGRF6 (GROWTH-REGULATING FACTOR 6); transcription activator  note GROWTH-REGULATING FACTOR 6 (AtGRF6); FUNCTIONS IN: transcription activator activity; INVOLVED IN: leaf development; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine-Leucine-Glutamine, QLQ (InterPro:IPR014978), WRC (InterPro:IPR014977); BEST Arabidopsis thaliana protein match is: AtGRF5 (GROWTH-REGULATING FACTOR 5); transcription activator (TAIR:AT3G13960.1); Has 334 Blast hits to 327 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 334; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G06200.1p  transcript_id AT2G06200.1  protein_id AT2G06200.1p  transcript_id AT2G06200.1  
At2g06210	chr2:002436448	0.0	C/2436448-2436588,2436205-2436271,2435922-2436116,2435651-2435751,2435401-2435454,2435131-2435246,2434971-2435034,2434650-2434864,2434348-2434435,2433963-2434063,2433772-2433864,2433361-2433429,2433161-2433253,2432826-2433086,2432237-2432317,2431987-2432145,2431467-2431562,2431144-2431245,2430958-2431065,2430634-2430858,2430062-2430328,2429887-2429958,2429366-2429698,2429108-2429281	AT2G06210.1  CDS  gene_syn EARLY FLOWERING 8, ELF8, F5K7.3, F5K7_3, VERNALIZATION INDEPENDENCE 6, VIP6  gene ELF8  function Encodes a yeast CTR9 homolog that is involved in the control of flowering time by elevating FLC expression to a level that creates the vernalization-responsive, winter-annual habit. Yeast CTR9 is a component of a five-member PAF1 complex that associates with RNA pol II and is thought to regulate gene expression by recruiting SET1 (a histone 3 Lys 4 [H3-K4] methyl transferase) to the initially transcribed [5 ] regions of target chromatin. Mutants display reduced H3-K4 methylation in both FLC and FLM chromatin.  go_component membrane|GO:0016020|17432890|IDA  go_function binding|GO:0005488||IEA  go_process negative regulation of flower development|GO:0009910|15472079|IMP  go_process negative regulation of flower development|GO:0009910|15520273|IMP  go_process histone methylation|GO:0016571|15520273|IMP  go_process positive regulation of transcription, DNA-dependent|GO:0045893|15472079|IMP  product ELF8 (EARLY FLOWERING 8); binding  note EARLY FLOWERING 8 (ELF8); FUNCTIONS IN: binding; INVOLVED IN: positive regulation of transcription, DNA-dependent, negative regulation of flower development, histone methylation; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: SEC (secret agent); transferase, transferring glycosyl groups (TAIR:AT3G04240.1); Has 49304 Blast hits to 28187 proteins in 1472 species: Archae - 637; Bacteria - 8143; Metazoa - 18032; Fungi - 4331; Plants - 1503; Viruses - 356; Other Eukaryotes - 16302 (source: NCBI BLink).  protein_id AT2G06210.1p  transcript_id AT2G06210.1  protein_id AT2G06210.1p  transcript_id AT2G06210.1  
At2g06220	chr2:002437307	0.0	W/2437307-2439691	AT2G06220.1  mRNA_TE_gene  pseudo  gene_syn F18P14.1, F18P14_1  function pseudogene of unknown protein  note Transposable element gene, pseudogene, expressed protein, contains Pfam profile PF03384: Drosophila protein of unknown function, DUF287  
At2g06230	chr2:002440437	0.0	C/2440437-2440733	AT2G06230.1  mRNA_TE_gene  pseudo  gene_syn F18P14.2, F18P14_2  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G33230.1)  
At2g06235	chr2:002441604	0.0	W/2441604-2442163	AT2G06235.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g06240	chr2:002444404	0.0	C/2444404-2447594	AT2G06240.1  mRNA_TE_gene  pseudo  gene_syn F18P14.3  note Transposable element gene, Mutator-like transposase family, has a 3.7e-37 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g06245	chr2:002447770	0.0	W/2447770-2448513	AT2G06245.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g06250	chr2:002449509	0.0	W/2449509-2450772	AT2G06250.1  mRNA_TE_gene  pseudo  gene_syn F18P14.4  note Transposable element gene, pseudogene, hypothetical protein  
At2g06255	chr2:002459336	0.0	W/2459336-2459665	AT2G06255.1  CDS  gene_syn ELF4-L3, ELF4-Like 3  gene ELF4-L3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ELF4-L3 (ELF4-Like 3)  note ELF4-Like 3 (ELF4-L3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1313 (InterPro:IPR009741); BEST Arabidopsis thaliana protein match is: ELF4-L4 (ELF4-Like 4) (TAIR:AT1G17455.2); Has 69 Blast hits to 68 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G06255.1p  transcript_id AT2G06255.1  protein_id AT2G06255.1p  transcript_id AT2G06255.1  
At2g06260	chr2:002463009	0.0	W/2463009-2465242	AT2G06260.1  mRNA_TE_gene  pseudo  gene_syn F18P14.5, F18P14_5  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.0e-28 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g06270	chr2:002468808	0.0	W/2468808-2470893	AT2G06270.1  mRNA_TE_gene  pseudo  gene_syn F18P14.6  note Transposable element gene, pseudogene, hypothetical protein, similar to MURA transposase of maize Mutator transposon  
At2g06280	chr2:002471485	0.0	W/2471485-2472485	AT2G06280.1  mRNA_TE_gene  pseudo  gene_syn F18P14.7  note Transposable element gene, pseudogene, hypothetical protein  
At2g06285	chr2:002474012	0.0	W/2474012-2474764	AT2G06285.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g06290	chr2:002475752	0.0	W/2475752-2484523	AT2G06290.1  mRNA_TE_gene  pseudo  gene_syn F18P14.8  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.2e-30 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)  
At2g06296	chr2:002484910	0.0	W/2484910-2485731	AT2G06296.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g06303	chr2:002487810	0.0	W/2487810-2488538	AT2G06303.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g06310	chr2:002489661	0.0	W/2489661-2494283	AT2G06310.1  mRNA_TE_gene  pseudo  gene_syn F18P14.10, F18P14_10  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.2e-219 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g06330	chr2:002495461	0.0	W/2495461-2497284	AT2G06330.1  mRNA_TE_gene  pseudo  gene_syn F18P14.12, F18P14_12  note Transposable element gene, pseudogene, hypothetical protein  
At2g06335	chr2:002499009	0.0	W/2499009-2499980	AT2G06335.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g06340	chr2:002502770	0.0	C/2502770-2504333	AT2G06340.1  mRNA_TE_gene  pseudo  gene_syn F18P14.13  note Transposable element gene, pseudogene, hypothetical protein  
At2g06350	chr2:002505325	0.0	C/2505325-2510457	AT2G06350.1  mRNA_TE_gene  pseudo  gene_syn F18P14.14  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.9e-229 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g06370	chr2:002512991	0.0	C/2512991-2513365	AT2G06370.1  mRNA_TE_gene  pseudo  gene_syn F18P14.16  note Transposable element gene, pseudogene, hypothetical protein, related to En/Spm transposon family of maize  
At2g06380	chr2:002514940	0.0	C/2514940-2515351	AT2G06380.1  mRNA_TE_gene  pseudo  gene_syn F18P14.17  note Transposable element gene, pseudogene, hypothetical protein, similar to MURA transposase of maize Mutator transposon  
At2g06390	chr2:002516586	0.0	C/2516586-2516712	AT2G06390.1  mRNA_TE_gene  pseudo  gene_syn F18P14.18, F18P14_18  note Transposable element gene  
At2g06400	chr2:002523645	0.0	C/2523645-2527757	AT2G06400.1  mRNA_TE_gene  pseudo  gene_syn F18P14.19  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.2e-27 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At2g06410	chr2:002531435	0.0	C/2531435-2534389	AT2G06410.1  mRNA_TE_gene  pseudo  gene_syn F18P14.20, F18P14_20  note Transposable element gene, Mutator-like transposase family, has a 7.0e-85 P-value blast match to Q9SJR8 /172-333 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g06420	chr2:002539083	0.0	W/2539083-2539796,2539950-2539985	AT2G06420.1  CDS  gene_syn F28N16.1, F28N16_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1985 (InterPro:IPR015410); Has 51 Blast hits to 50 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G06420.1p  transcript_id AT2G06420.1  protein_id AT2G06420.1p  transcript_id AT2G06420.1  
At2g06430	chr2:002543161	0.0	W/2543161-2547826	AT2G06430.1  mRNA_TE_gene  pseudo  gene_syn F28N16.2, F28N16_2  note Transposable element gene, pseudogene, Ulp1 protease family, contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain; similar to At1g32840, At4g04010, At2g15140, At2g04980, At2g14130, At3g44500, At2g15190, At3g47260, At5g34900, At3g29210, At2g02210, At3g32900  
At2g06440	chr2:002550125	0.0	W/2550125-2554730	AT2G06440.1  mRNA_TE_gene  pseudo  gene_syn F28N16.3  note Transposable element gene, pseudogene, hypothetical protein  
At2g06450	chr2:002555554	0.0	C/2555554-2557522	AT2G06450.1  mRNA_TE_gene  pseudo  gene_syn F28N16.4, F28N16_4  note Transposable element gene, Mutator-like transposase family, has a 4.3e-83 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g06460	chr2:002563267	0.0	W/2563267-2564309	AT2G06460.1  mRNA_TE_gene  pseudo  gene_syn T12H3.1  note Transposable element gene, pseudogene, hypothetical protein  
At2g06470	chr2:002564453	0.0	C/2564453-2569288	AT2G06470.1  mRNA_TE_gene  pseudo  gene_syn T12H3.2, T12H3_2  note Transposable element gene, gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At2g06480	chr2:002570237	0.0	W/2570237-2570643	AT2G06480.1  mRNA_TE_gene  pseudo  gene_syn T12H3.3, T12H3_3  note Transposable element gene  
At2g06490	chr2:002572217	0.0	C/2572217-2574502	AT2G06490.1  mRNA_TE_gene  pseudo  gene_syn T12H3.4, T12H3_4  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 7.5e-83 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At2g06500	chr2:002583180	0.0	C/2583180-2583223,2582954-2583150,2581977-2582658,2581603-2581769,2580718-2581376	AT2G06500.1  CDS  gene_syn T12H3.5, T12H3_5  go_function protein dimerization activity|GO:0046983||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product hAT dimerisation domain-containing protein / transposase-related  note hAT dimerisation domain-containing protein / transposase-related; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G35150.1); Has 406 Blast hits to 310 proteins in 43 species: Archae - 0; Bacteria - 5; Metazoa - 245; Fungi - 2; Plants - 123; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT2G06500.1p  transcript_id AT2G06500.1  protein_id AT2G06500.1p  transcript_id AT2G06500.1  
At2g06510	chr2:002585215	0.0	W/2585215-2585220,2585290-2585486,2585951-2587601	AT2G06510.2  CDS  gene_syn ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ATRPA1A, ATRPA70A, REPLICATION PROTEIN A 1A, RPA1A, RPA70-KDA SUBUNIT A, RPA70A, T12H3.6, T12H3_6  gene RPA1A  function Encodes a homolog of Replication Protein A that is involved in meiosis I in pollen mother cells. rpa1a mutants have a reduced number of class I crossovers. The protein is located in chromatin-associated foci in early leptotene and can be detected in these foci until late pachytene of meiosis I.  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_component nuclear chromatin|GO:0000790|19153602|IDA  go_process DNA replication|GO:0006260||ISS  go_process reciprocal meiotic recombination|GO:0007131|19153602|IGI  go_process male meiosis I|GO:0007141|19153602|IMP  go_process pollen development|GO:0009555|19153602|IMP  go_process male gamete generation|GO:0048232|19153602|IMP  go_process chiasma formation|GO:0051026|19153602|IMP  product RPA1A (REPLICATION PROTEIN A 1A); DNA binding / nucleic acid binding  note REPLICATION PROTEIN A 1A (RPA1A); FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: in 6 processes; LOCATED IN: nuclear chromatin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Replication factor-a protein 1 Rpa1 (InterPro:IPR004591), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Replication factor-A, C-terminal (InterPro:IPR013955), Replication factor-A protein 1, N-terminal (InterPro:IPR007199); BEST Arabidopsis thaliana protein match is: DNA binding / nucleic acid binding / zinc ion binding (TAIR:AT4G19130.1); Has 584 Blast hits to 577 proteins in 163 species: Archae - 10; Bacteria - 0; Metazoa - 168; Fungi - 92; Plants - 191; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).  protein_id AT2G06510.2p  transcript_id AT2G06510.2  protein_id AT2G06510.2p  transcript_id AT2G06510.2  
At2g06510	chr2:002585215	0.0	W/2585215-2585486,2585951-2587601	AT2G06510.1  CDS  gene_syn ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ATRPA1A, ATRPA70A, REPLICATION PROTEIN A 1A, RPA1A, RPA70-KDA SUBUNIT A, RPA70A, T12H3.6, T12H3_6  gene RPA1A  function Encodes a homolog of Replication Protein A that is involved in meiosis I in pollen mother cells. rpa1a mutants have a reduced number of class I crossovers. The protein is located in chromatin-associated foci in early leptotene and can be detected in these foci until late pachytene of meiosis I.  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_component nuclear chromatin|GO:0000790|19153602|IDA  go_process DNA replication|GO:0006260||ISS  go_process reciprocal meiotic recombination|GO:0007131|19153602|IGI  go_process male meiosis I|GO:0007141|19153602|IMP  go_process pollen development|GO:0009555|19153602|IMP  go_process male gamete generation|GO:0048232|19153602|IMP  go_process chiasma formation|GO:0051026|19153602|IMP  product RPA1A (REPLICATION PROTEIN A 1A); DNA binding / nucleic acid binding  note REPLICATION PROTEIN A 1A (RPA1A); FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: in 6 processes; LOCATED IN: nuclear chromatin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Replication factor-a protein 1 Rpa1 (InterPro:IPR004591), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Replication factor-A, C-terminal (InterPro:IPR013955), Replication factor-A protein 1, N-terminal (InterPro:IPR007199); BEST Arabidopsis thaliana protein match is: DNA binding / nucleic acid binding / zinc ion binding (TAIR:AT4G19130.1); Has 587 Blast hits to 580 proteins in 163 species: Archae - 10; Bacteria - 0; Metazoa - 169; Fungi - 92; Plants - 192; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).  protein_id AT2G06510.1p  transcript_id AT2G06510.1  protein_id AT2G06510.1p  transcript_id AT2G06510.1  
At2g06520	chr2:002587868	0.0	C/2587868-2588218	AT2G06520.1  CDS  gene_syn PSBX, PSII-X, T12H3.7, T12H3_7, photosystem II subunit X  gene PSBX  function Encodes a protein with sequence similarity to the spinach photosystem II subunit PsbX.  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_process photosynthesis|GO:0015979||IEA  go_function molecular_function|GO:0003674||ND  product PSBX (photosystem II subunit X)  note photosystem II subunit X (PSBX); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthesis; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II protein PsbX (InterPro:IPR009518); Has 39 Blast hits to 39 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G06520.1p  transcript_id AT2G06520.1  protein_id AT2G06520.1p  transcript_id AT2G06520.1  
At2g06530	chr2:002590246	0.0	C/2590246-2590285,2589700-2589830,2589486-2589590,2589146-2589406,2588740-2588880	AT2G06530.1  CDS  gene_syn T12H3.8, T12H3_8, VPS2, VPS2.1  gene VPS2.1  go_component ESCRT III complex|GO:0000815|17090720|ISS  go_process vesicle-mediated transport|GO:0016192|16488176|ISS  product VPS2.1  note VPS2.1; INVOLVED IN: vesicle-mediated transport; LOCATED IN: ESCRT III complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: VPS2.3 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2.3) (TAIR:AT1G03950.1); Has 1847 Blast hits to 1844 proteins in 191 species: Archae - 6; Bacteria - 15; Metazoa - 919; Fungi - 326; Plants - 342; Viruses - 6; Other Eukaryotes - 233 (source: NCBI BLink).  protein_id AT2G06530.1p  transcript_id AT2G06530.1  protein_id AT2G06530.1p  transcript_id AT2G06530.1  
At2g06540	chr2:002592442	0.0	C/2592442-2597780	AT2G06540.1  mRNA_TE_gene  pseudo  gene_syn T12H3.9  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 9.6e-42 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)  
At2g06541	chr2:002599267	0.0	C/2599267-2600326,2598872-2598996,2598222-2598731	AT2G06541.2  CDS  go_function protein dimerization activity|GO:0046983||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein dimerization  note protein dimerization; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, TTF-type (InterPro:IPR006580); BEST Arabidopsis thaliana protein match is: hAT dimerisation domain-containing protein (TAIR:AT1G19260.1).  protein_id AT2G06541.2p  transcript_id AT2G06541.2  protein_id AT2G06541.2p  transcript_id AT2G06541.2  
At2g06541	chr2:002599267	0.0	C/2599267-2600326,2599084-2599167,2598872-2598996,2598222-2598731	AT2G06541.1  CDS  go_function protein dimerization activity|GO:0046983||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein dimerization  note protein dimerization; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, TTF-type (InterPro:IPR006580); BEST Arabidopsis thaliana protein match is: hAT dimerisation domain-containing protein (TAIR:AT1G19260.1).  protein_id AT2G06541.1p  transcript_id AT2G06541.1  protein_id AT2G06541.1p  transcript_id AT2G06541.1  
At2g06550	chr2:002602742	0.0	C/2602742-2603484	AT2G06550.1  mRNA_TE_gene  pseudo  gene_syn T12H3.10  note Transposable element gene, pseudogene, similar to B1129H01.3, blastp match of 57% identity and 1.1e-68 P-value to GP|20161194|dbj|BAB90121.1||AP003370 B1129H01.3 {Oryza sativa (japonica cultivar-group)}  
At2g06555	chr2:002604595	0.0	C/2604595-2604832,2604358-2604522,2604195-2604271	AT2G06555.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 25 Blast hits to 25 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G06555.1p  transcript_id AT2G06555.1  protein_id AT2G06555.1p  transcript_id AT2G06555.1  
At2g06560	chr2:002611034	0.0	W/2611034-2616254	AT2G06560.1  mRNA_TE_gene  pseudo  gene_syn T12H3.11  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.8e-38 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)  
At2g06562	chr2:002617554	0.0	W/2617554-2619173	AT2G06562.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G06562.1  
At2g06570	chr2:002624338	0.0	C/2624338-2624902,2624071-2624227,2622603-2622714	AT2G06570.1  CDS  gene_syn T12H3.12, T12H3_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G06645.1); Has 18 Blast hits to 18 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G06570.1p  transcript_id AT2G06570.1  protein_id AT2G06570.1p  transcript_id AT2G06570.1  
At2g06580	chr2:002625043	0.0	W/2625043-2628033	AT2G06580.1  mRNA_TE_gene  pseudo  gene_syn T12H3.13  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.2e-22 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At2g06590	chr2:002633129	0.0	W/2633129-2635227	AT2G06590.1  mRNA_TE_gene  pseudo  gene_syn T12H3.14  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 1.2e-69 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At2g06600	chr2:002639598	0.0	W/2639598-2642549	AT2G06600.1  mRNA_TE_gene  pseudo  gene_syn T12H3.15  note Transposable element gene, Mutator-like transposase family, has a 1.2e-73 P-value blast match to Q9SL18 /349-510 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g06610	chr2:002642998	0.0	W/2642998-2643729	AT2G06610.1  mRNA_TE_gene  pseudo  gene_syn T12H3.16, T12H3_16  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G06690.1); similar to hypothetical protein 31.t00082 [Brassica oleracea] (GB:ABD65101.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At2g06620	chr2:002644421	0.0	C/2644421-2644906	AT2G06620.1  mRNA_TE_gene  pseudo  gene_syn T14A4.22  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G06700.1)  
At2g06630	chr2:002645688	0.0	C/2645688-2646383	AT2G06630.1  mRNA_TE_gene  pseudo  gene_syn T14A4.21, T14A4_21  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G12120.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28482.1); similar to hypothetical protein 40.t00047 [Brassica oleracea] (GB:ABD65162.1)  
At2g06640	chr2:002647083	0.0	C/2647083-2647769	AT2G06640.1  mRNA_TE_gene  pseudo  gene_syn T14A4.20, T14A4_20  note Transposable element gene, pseudogene, hypothetical protein  
At2g06645	chr2:002648480	0.0	C/2648480-2648971	AT2G06645.1  CDS  gene_syn T14A4.1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G06570.1); Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G06645.1p  transcript_id AT2G06645.1  protein_id AT2G06645.1p  transcript_id AT2G06645.1  
At2g06650	chr2:002649058	0.0	W/2649058-2652090	AT2G06650.1  mRNA_TE_gene  pseudo  gene_syn T14A4.19  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.0e-19 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At2g06660	chr2:002656414	0.0	C/2656414-2657265	AT2G06660.1  mRNA_TE_gene  pseudo  gene_syn T14A4.18, T14A4_18  note Transposable element gene, Mariner-like transposase family, has a 2.3e-43 P-value blast match to GB:S20478 hypothetical protein (Mariner_Tc1-element) (Drosophila melanogaster)  
At2g06667	chr2:002660527	0.0	C/2660527-2660715	AT2G06667.1  CDS  product unknown protein  note unknown protein; Has 2 Blast hits to 2 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G06667.1p  transcript_id AT2G06667.1  protein_id AT2G06667.1p  transcript_id AT2G06667.1  
At2g06670	chr2:002661493	0.0	W/2661493-2663643	AT2G06670.1  mRNA_TE_gene  pseudo  gene_syn T14A4.17  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 2.2e-89 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At2g06680	chr2:002667277	0.0	W/2667277-2669811	AT2G06680.1  mRNA_TE_gene  pseudo  gene_syn T14A4.16  note Transposable element gene, Mutator-like transposase family, has a 7.2e-67 P-value blast match to Q9SL18 /349-510 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g06690	chr2:002670235	0.0	W/2670235-2671237	AT2G06690.1  mRNA_TE_gene  pseudo  gene_syn T14A4.15, T14A4_15  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G45080.1); similar to Nucleic acid-binding, OB-fold, subgroup [Medicago truncatula] (GB:ABE78704.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At2g06700	chr2:002671718	0.0	C/2671718-2672371	AT2G06700.1  mRNA_TE_gene  pseudo  gene_syn T14A4.14, T14A4_14  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G12130.1); contains domain Positive stranded ssRNA viruses (SSF88633)  
At2g06710	chr2:002673155	0.0	C/2673155-2675230	AT2G06710.1  mRNA_TE_gene  pseudo  gene_syn T14A4.13  note Transposable element gene, pseudogene, hypothetical protein  
At2g06715	chr2:002675490	0.0	C/2675490-2677993	AT2G06715.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g06720	chr2:002678827	0.0	C/2678827-2681289	AT2G06720.1  mRNA_TE_gene  pseudo  gene_syn T14A4.12, T14A4_12  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 1.5e-42 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At2g06740	chr2:002681659	0.0	C/2681659-2685131	AT2G06740.1  mRNA_TE_gene  pseudo  gene_syn T14A4.10  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 2.6e-145 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At2g06750	chr2:002685970	0.0	C/2685970-2687731	AT2G06750.1  mRNA_TE_gene  pseudo  gene_syn T14A4.9, T14A4_9  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28480.1); contains domain E set domains (SSF81296)  
At2g06760	chr2:002691303	0.0	C/2691303-2694916	AT2G06760.1  mRNA_TE_gene  pseudo  gene_syn T14A4.8  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 1.4e-38 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays)  
At2g06770	chr2:002703902	0.0	C/2703902-2704988	AT2G06770.1  mRNA_TE_gene  pseudo  gene_syn T14A4.7  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.7e-15 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g06775	chr2:002705826	0.0	C/2705826-2706212	AT2G06775.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G06140.1)  
At2g06780	chr2:002709951	0.0	C/2709951-2712872	AT2G06780.1  mRNA_TE_gene  pseudo  gene_syn T14A4.6  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 5.8e-17 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)  
At2g06790	chr2:002713393	0.0	W/2713393-2716565	AT2G06790.1  mRNA_TE_gene  pseudo  gene_syn T14A4.5  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 3.4e-84 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)  
At2g06800	chr2:002717359	0.0	W/2717359-2719979	AT2G06800.1  mRNA_TE_gene  pseudo  gene_syn T14A4.4, T14A4_4  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 6.5e-40 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At2g06810	chr2:002720745	0.0	C/2720745-2723009	AT2G06810.1  mRNA_TE_gene  pseudo  gene_syn T14A4.3  note Transposable element gene, pseudogene, similar to putative non-LTR retroelement reverse transcriptase, blastp match of 33% identity and 3.5e-10 P-value to GP|10140689|gb|AAG13524.1|AC068924_29|AC068924 putative non-LTR retroelement reverse transcriptase {Oryza sativa (japonica cultivar-group)}  
At2g06820	chr2:002726656	0.0	C/2726656-2727484	AT2G06820.1  mRNA_TE_gene  pseudo  gene_syn T9F8.1, T9F8_1  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09700.1); similar to 80C09_29 [Brassica rapa subsp. pekinensis] (GB:AAZ41840.1); contains domain Retrovirus zinc finger-like domains (SSF57756)  
At2g06822	chr2:002728708	0.0	C/2728708-2729075	AT2G06822.1  pseudogenic_transcript  pseudo  function Pseudogene of AT2G06822  
At2g06830	chr2:002739871	0.0	C/2739871-2743438	AT2G06830.1  mRNA_TE_gene  pseudo  gene_syn T9F8.2  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element)  
At2g06840	chr2:002747349	0.0	W/2747349-2752133	AT2G06840.1  mRNA_TE_gene  pseudo  gene_syn T9F8.3, T9F8_3  note Transposable element gene, copia-like retrotransposon family, has a 3.5e-184 P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At2g06845	chr2:002754666	0.0	W/2754666-2754818,2755129-2755534,2755620-2756008	AT2G06845.1  CDS  go_component beta-galactosidase complex|GO:0009341||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  product beta-galactosidase  note beta-galactosidase; FUNCTIONS IN: beta-galactosidase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: beta-galactosidase complex; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944); BEST Arabidopsis thaliana protein match is: nucleic acid binding / ribonuclease H (TAIR:AT1G10000.1); Has 85 Blast hits to 85 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G06845.1p  transcript_id AT2G06845.1  protein_id AT2G06845.1p  transcript_id AT2G06845.1  
At2g06850	chr2:002763619	0.0	W/2763619-2763814,2764284-2764384,2764469-2764662,2765091-2765490	AT2G06850.1  CDS  gene_syn ENDOXYLOGLUCAN TRANSFERASE, EXGT-A1, EXT, T9F8.4, T9F8_4  gene EXGT-A1  function endoxyloglucan transferase (EXGT-A1) gene  go_component cell wall|GO:0005618|15593128|IDA  go_component cell wall|GO:0005618|16287169|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component extracellular region|GO:0005576|1400418|IDA  go_component cell wall|GO:0005618|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process response to mechanical stimulus|GO:0009612|8696366|IEP  go_process response to low light intensity stimulus|GO:0009645|8696366|IEP  go_process response to auxin stimulus|GO:0009733|8696366|IEP  go_process unidimensional cell growth|GO:0009826|10557219|IMP  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762|1400418|IMP  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762|8696366|ISS  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product EXGT-A1 (ENDOXYLOGLUCAN TRANSFERASE); hydrolase, acting on glycosyl bonds / xyloglucan:xyloglucosyl transferase  note ENDOXYLOGLUCAN TRANSFERASE (EXGT-A1); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: response to auxin stimulus, response to mechanical stimulus, response to low light intensity stimulus, unidimensional cell growth; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16, active site (InterPro:IPR008263), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4); hydrolase, acting on glycosyl bonds / hydrolase, hydrolyzing O-glycosyl compounds / xyloglucan:xyloglucosyl transferase (TAIR:AT5G13870.1); Has 1349 Blast hits to 1343 proteins in 210 species: Archae - 0; Bacteria - 186; Metazoa - 0; Fungi - 275; Plants - 805; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT2G06850.1p  transcript_id AT2G06850.1  protein_id AT2G06850.1p  transcript_id AT2G06850.1  
At2g06860	chr2:002766356	0.0	W/2766356-2772445	AT2G06860.1  mRNA_TE_gene  pseudo  gene_syn T9F8.5, T9F8_5  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G35770.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At2g06870	chr2:002775703	0.0	C/2775703-2779187	AT2G06870.1  mRNA_TE_gene  pseudo  gene_syn T9F8.6, T9F8_6  note Transposable element gene, Mutator-like transposase family, has a 2.3e-49 P-value blast match to Q9SHN7 /450-633 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g06875	chr2:002780108	0.0	W/2780108-2781442	AT2G06875.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.6e-46 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At2g06880	chr2:002782435	0.0	W/2782435-2785689	AT2G06880.1  mRNA_TE_gene  pseudo  gene_syn T9F8.7  note Transposable element gene, copia-like retrotransposon family, has a 5.5e-55 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)  
At2g06885	chr2:002790227	0.0	W/2790227-2792797	AT2G06885.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.3e-16 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g06890	chr2:002795097	0.0	W/2795097-2799273	AT2G06890.1  mRNA_TE_gene  pseudo  gene_syn T9F8.8, T9F8_8  note Transposable element gene, gypsy-like retrotransposon family, has a 7.3e-184 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At2g06900	chr2:002800668	0.0	W/2800668-2802977	AT2G06900.1  mRNA_TE_gene  pseudo  gene_syn T9F8.9  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 8.6e-144 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At2g06902	chr2:002803448	0.0	W/2803448-2804634	AT2G06902.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp1/En/Spm), has a 4.2e-39 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)  
At2g06904	chr2:002806625	0.0	W/2806625-2806724,2806815-2807368	AT2G06904.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product nucleic acid binding / zinc ion binding  note nucleic acid binding / zinc ion binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G09840.1); Has 13 Blast hits to 13 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G06904.1p  transcript_id AT2G06904.1  protein_id AT2G06904.1p  transcript_id AT2G06904.1  
At2g06906	chr2:002807740	0.0	C/2807740-2807967,2807614-2807655,2807415-2807516	AT2G06906.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: nucleic acid binding / zinc ion binding (TAIR:AT2G06904.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G06906.1p  transcript_id AT2G06906.1  protein_id AT2G06906.1p  transcript_id AT2G06906.1  
At2g06908	chr2:002815398	0.0	W/2815398-2815565,2815768-2815869,2816206-2816349	AT2G06908.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G06908.1p  transcript_id AT2G06908.1  protein_id AT2G06908.1p  transcript_id AT2G06908.1  
At2g06910	chr2:002818439	0.0	W/2818439-2821477	AT2G06910.1  mRNA_TE_gene  pseudo  gene_syn T4E14.2  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 4.3e-100 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays)  
At2g06912	chr2:002826242	0.0	W/2826242-2826931	AT2G06912.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At2g06914	chr2:002827624	0.0	W/2827624-2828100	AT2G06914.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32775.1)  
At2g06917	chr2:002829211	0.0	W/2829211-2829798	AT2G06917.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g06920	chr2:002832083	0.0	W/2832083-2836514	AT2G06920.1  mRNA_TE_gene  pseudo  gene_syn T4E14.3  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 7.7e-13 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At2g06922	chr2:002837027	0.0	W/2837027-2838337	AT2G06922.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.3e-20 P-value blast match to GB:AAD12998 pol polyprotein (Ty1_Copia-element) (Zea mays)  
At2g06925	chr2:002843111	0.0	C/2843111-2843212,2842969-2843011,2842748-2842873,2842475-2842650	AT2G06925.1  CDS  gene_syn ATSPLA2-ALPHA, PHOSPHOLIPASE A2-ALPHA, PLA2-ALPHA  gene PLA2-ALPHA  function Encodes a secretory phospholipase A2 enzyme, which specifically hydrolyzes the sn-2 position of phospholipids. The enzyme has a preference towards linoleoyl acyl chain over palmitoyl acyl chain. It also has a slight preference for phosphatidylcholine over phosphatidylethanolamine.  go_process phospholipid metabolic process|GO:0006644||IEA  go_process lipid catabolic process|GO:0016042||IEA  go_component vacuole|GO:0005773|16140037|TAS  go_function phospholipase A2 activity|GO:0004623|16140037|IDA  go_function phospholipase A2 activity|GO:0004623|16669612|IDA  go_function phospholipase A2 activity|GO:0004623||ISS  product PLA2-ALPHA; phospholipase A2  note PLA2-ALPHA; FUNCTIONS IN: phospholipase A2 activity; INVOLVED IN: phospholipid metabolic process, lipid catabolic process; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase A2, active site (InterPro:IPR013090), Phospholipase A2 (InterPro:IPR016090), Phospholipase A2, eukaryotic (InterPro:IPR001211); BEST Arabidopsis thaliana protein match is: phospholipase A2, putative (TAIR:AT4G29470.1); Has 70 Blast hits to 70 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G06925.1p  transcript_id AT2G06925.1  protein_id AT2G06925.1p  transcript_id AT2G06925.1  
At2g06930	chr2:002845313	0.0	C/2845313-2849281	AT2G06930.1  mRNA_TE_gene  pseudo  gene_syn T4E14.4  note Transposable element gene, copia-like retrotransposon family, has a 2.3e-233 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At2g06940	chr2:002854631	0.0	W/2854631-2855710	AT2G06940.1  pseudogenic_transcript  pseudo  gene_syn T4E14.5  note pseudogene, similar to putative pectin methylesterase, blastp match of 41% identity and 3.5e-39 P-value to GP|20521423|dbj|BAB91933.1||AP003768 putative pectin methylesterase {Oryza sativa (japonica cultivar-group)}  
At2g06950	chr2:002859226	0.0	C/2859226-2863434	AT2G06950.1  mRNA_TE_gene  pseudo  gene_syn T4E14.6, T4E14_6  note Transposable element gene, copia-like retrotransposon family, has a 2.7e-243 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)  
At2g06960	chr2:002870079	0.0	C/2870079-2870352,2867672-2867844	AT2G06960.1  CDS  gene_syn T4E14.7, T4E14_7  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT2G36690.1); Has 2375 Blast hits to 2369 proteins in 305 species: Archae - 0; Bacteria - 36; Metazoa - 1; Fungi - 16; Plants - 2296; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT2G06960.1p  transcript_id AT2G06960.1  protein_id AT2G06960.1p  transcript_id AT2G06960.1  
At2g06965	chr2:002875034	0.0	C/2875034-2876983	AT2G06965.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, temporary automated functional assignment  
At2g06967	chr2:002877624	0.0	C/2877624-2880656	AT2G06967.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 5.2e-202 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g06973	chr2:002882424	0.0	C/2882424-2882717	AT2G06973.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 8.1e-07 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At2g06980	chr2:002883425	0.0	W/2883425-2886166	AT2G06980.1  mRNA_TE_gene  pseudo  gene_syn T4E14.9, T4E14_9  note Transposable element gene, pseudogene, hypothetical protein  
At2g06983	chr2:002888951	0.0	W/2888951-2889017,2889186-2889382	AT2G06983.1  CDS  gene_syn SCR-Like 16, SCRL16  gene SCRL16  function Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165||IEA  product SCRL16 (SCR-Like 16)  note SCR-Like 16 (SCRL16); INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility response (InterPro:IPR010682); BEST Arabidopsis thaliana protein match is: SCRL12 (SCR-Like 12) (TAIR:AT3G23727.1); Has 31 Blast hits to 31 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G06983.1p  transcript_id AT2G06983.1  protein_id AT2G06983.1p  transcript_id AT2G06983.1  
At2g06985	chr2:002893061	0.0	W/2893061-2893306	AT2G06985.1  pseudogenic_transcript  pseudo  note hypothetical protein  
At2g06990	chr2:002895135	0.0	W/2895135-2896121,2896279-2896593,2896687-2896791,2896885-2896953,2897211-2897378,2897461-2897532,2897607-2897723,2898232-2898441,2898532-2898690,2898961-2899050,2899180-2899272,2899608-2899761,2899879-2900027,2900113-2900208,2900625-2900717,2900799-2900909	AT2G06990.1  CDS  gene_syn HEN2, T4E14.10, T4E14_10, hua enhancer 2  gene HEN2  function encodes a putative DExH-box RNA helicase that acts redundantly with HEN1, HUA1, and HUA2 in the specification of floral organ identity in the third whorl.  go_component nucleus|GO:0005634|11923195|ISS  go_process specification of floral organ identity|GO:0010093|11923195|IMP  go_process RNA metabolic process|GO:0016070|12119159|TAS  go_function RNA helicase activity|GO:0003724|11923195|ISS  go_function ATP-dependent helicase activity|GO:0008026||ISS  product HEN2 (hua enhancer 2); ATP-dependent helicase/ RNA helicase  note hua enhancer 2 (HEN2); FUNCTIONS IN: RNA helicase activity, ATP-dependent helicase activity; INVOLVED IN: specification of floral organ identity, RNA metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DSH, C-terminal (InterPro:IPR012961), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), RNA helicase, ATP-dependent, SK12/DOB1 (InterPro:IPR016438), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP-dependent RNA helicase, putative (TAIR:AT1G59760.1); Has 6925 Blast hits to 5842 proteins in 722 species: Archae - 451; Bacteria - 1575; Metazoa - 1032; Fungi - 763; Plants - 225; Viruses - 31; Other Eukaryotes - 2848 (source: NCBI BLink).  protein_id AT2G06990.1p  transcript_id AT2G06990.1  protein_id AT2G06990.1p  transcript_id AT2G06990.1  
At2g07000	chr2:002901920	0.0	C/2901920-2902012	AT2G07000.1  CDS  gene_syn T4E14.11, T4E14_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07000.1p  transcript_id AT2G07000.1  protein_id AT2G07000.1p  transcript_id AT2G07000.1  
At2g07010	chr2:002902602	0.0	W/2902602-2906953	AT2G07010.1  mRNA_TE_gene  pseudo  gene_syn T4E14.12, T4E14_12  note Transposable element gene, copia-like retrotransposon family, has a 2.9e-175 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At2g07020	chr2:002911030	0.0	C/2911030-2911198,2910869-2910945,2910555-2910673,2910216-2910461,2909889-2910132,2909706-2909807,2908473-2909618	AT2G07020.1  CDS  gene_syn T4E14.13, T4E14_13  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process response to stress|GO:0006950||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, response to stress; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G35380.1); Has 84364 Blast hits to 83312 proteins in 3213 species: Archae - 60; Bacteria - 7555; Metazoa - 37220; Fungi - 6565; Plants - 18866; Viruses - 274; Other Eukaryotes - 13824 (source: NCBI BLink).  protein_id AT2G07020.1p  transcript_id AT2G07020.1  protein_id AT2G07020.1p  transcript_id AT2G07020.1  
At2g07030	chr2:002913629	0.0	W/2913629-2914781	AT2G07030.1  mRNA_TE_gene  pseudo  gene_syn T4E14.14, T4E14_14  note Transposable element gene, Mutator-like transposase family, has a 2.9e-11 P-value blast match to Q9XE24 /118-277 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g07040	chr2:002916621	0.0	W/2916621-2917251,2917342-2917983,2918090-2918760	AT2G07040.1  CDS  gene_syn ATPRK2A, PRK2A, T4E14.15, T4E14_15  gene PRK2A  function Pollen receptor kinase. Coexpression of AtPRK2a with AtRopGEF12 resulted in isotropic pollen tube growth.  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component plasma membrane|GO:0005886|18000057|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_process pollen tube growth|GO:0009860|18000057|IEP  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product PRK2A; ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note PRK2A; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation, pollen tube growth; LOCATED IN: plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT5G35390.1); Has 58493 Blast hits to 46556 proteins in 1488 species: Archae - 22; Bacteria - 2303; Metazoa - 18168; Fungi - 2794; Plants - 27979; Viruses - 222; Other Eukaryotes - 7005 (source: NCBI BLink).  protein_id AT2G07040.1p  transcript_id AT2G07040.1  protein_id AT2G07040.1p  transcript_id AT2G07040.1  
At2g07042	chr2:002919953	0.0	C/2919953-2922249	AT2G07042.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G07042.1  
At2g07050	chr2:002924629	0.0	W/2924629-2924826,2925621-2925806,2925886-2925975,2926142-2926336,2926440-2926524,2927068-2927234,2927491-2927679,2927860-2927973,2928327-2928449,2928534-2928656,2928731-2928829,2928974-2929030,2929149-2929195,2929290-2929433,2929543-2929720,2929804-2929884,2930010-2930093,2930176-2930295	AT2G07050.1  CDS  gene_syn CAS1, CYCLOARTENOL SYNTHASE 1, T4E14.16, T4E14_16, cycloartenol synthase 1  gene CAS1  function Involved in the biosynthesis of brassinosteroids. Catalyzes the reaction from epoxysqualene to cycloartenol.  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_process pollen development|GO:0009555|18287026|IMP  go_process thylakoid membrane organization|GO:0010027|18287026|IMP  go_process pentacyclic triterpenoid biosynthetic process|GO:0019745|7505443|IDA  go_process pentacyclic triterpenoid biosynthetic process|GO:0019745||ISS  go_function cycloartenol synthase activity|GO:0016871|7505443|IDA  product CAS1 (cycloartenol synthase 1); cycloartenol synthase  note cycloartenol synthase 1 (CAS1); FUNCTIONS IN: cycloartenol synthase activity; INVOLVED IN: pentacyclic triterpenoid biosynthetic process, thylakoid membrane organization, pollen development; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Terpene synthase, conserved site (InterPro:IPR002365), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Squalene cyclase (InterPro:IPR018333), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: LAS1; lanosterol synthase (TAIR:AT3G45130.1); Has 1363 Blast hits to 1261 proteins in 361 species: Archae - 0; Bacteria - 581; Metazoa - 76; Fungi - 164; Plants - 338; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink).  protein_id AT2G07050.1p  transcript_id AT2G07050.1  protein_id AT2G07050.1p  transcript_id AT2G07050.1  
At2g07070	chr2:002932228	0.0	C/2932228-2934314	AT2G07070.1  mRNA_TE_gene  pseudo  gene_syn T4E14.17, T4E14_17  function pseudogene of unknown protein  note Transposable element gene  
At2g07080	chr2:002936239	0.0	W/2936239-2938827	AT2G07080.1  mRNA_TE_gene  pseudo  gene_syn T25N22.4, T25N22_4  note Transposable element gene, copia-like retrotransposon family, has a 5.0e-74 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At2g07090	chr2:002941433	0.0	W/2941433-2941984	AT2G07090.1  mRNA_TE_gene  pseudo  gene_syn T25N22.5, T25N22_5  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G43920.1); similar to GRF zinc finger containing protein [Brassica oleracea] (GB:ABD64950.1)  
At2g07100	chr2:002942233	0.0	C/2942233-2945080	AT2G07100.1  mRNA_TE_gene  pseudo  gene_syn T25N22.6  note Transposable element gene, Mutator-like transposase family, has a 3.2e-42 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At2g07110	chr2:002952977	0.0	C/2952977-2953208,2952813-2952913,2952610-2952729	AT2G07110.1  CDS  gene_syn T25N22.7, T25N22_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: 3  exoribonuclease family domain 1-containing protein (TAIR:AT3G46210.5); Has 24 Blast hits to 24 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G07110.1p  transcript_id AT2G07110.1  protein_id AT2G07110.1p  transcript_id AT2G07110.1  
At2g07120	chr2:002954648	0.0	C/2954648-2954722,2953605-2954591	AT2G07120.1  CDS  gene_syn T25N22.8, T25N22_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G18340.1); Has 409 Blast hits to 399 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 409; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07120.1p  transcript_id AT2G07120.1  protein_id AT2G07120.1p  transcript_id AT2G07120.1  
At2g07130	chr2:002955677	0.0	W/2955677-2956900	AT2G07130.1  pseudogenic_transcript  pseudo  gene_syn T25N22.9, T25N22_9  note pseudogene, hypothetical protein  
At2g07140	chr2:002957561	0.0	W/2957561-2958670,2959346-2959482,2959770-2959851	AT2G07140.1  CDS  gene_syn T25N22.10, T25N22_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G44120.1); Has 760 Blast hits to 739 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 760; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07140.1p  transcript_id AT2G07140.1  protein_id AT2G07140.1p  transcript_id AT2G07140.1  
At2g07140	chr2:002957561	0.0	W/2957561-2958715	AT2G07140.2  CDS  gene_syn T25N22.10, T25N22_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G44120.1).  protein_id AT2G07140.2p  transcript_id AT2G07140.2  protein_id AT2G07140.2p  transcript_id AT2G07140.2  
At2g07150	chr2:002962953	0.0	W/2962953-2964182	AT2G07150.1  mRNA_TE_gene  pseudo  gene_syn T25N22.11  note Transposable element gene, pseudogene, similar to P0707D10.17, blastp match of 27% identity and 3.3e-12 P-value to GP|13603432|dbj|BAB40159.1||AP002910 P0707D10.17 {Oryza sativa (japonica cultivar-group)}  
At2g07155	chr2:002968105	0.0	W/2968105-2968617	AT2G07155.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 7.9e-17 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays)  
At2g07160	chr2:002969531	0.0	W/2969531-2974603	AT2G07160.1  mRNA_TE_gene  pseudo  gene_syn T25N22.12  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.2e-44 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)  
At2g07170	chr2:002975565	0.0	W/2975565-2976224,2976336-2976530,2976616-2976718,2976817-2977466,2977597-2978271,2978350-2978515,2978679-2978692	AT2G07170.1  CDS  gene_syn T25N22.13, T25N22_13  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: TOR1 (TORTIFOLIA 1); microtubule binding (TAIR:AT4G27060.1); Has 299 Blast hits to 259 proteins in 63 species: Archae - 6; Bacteria - 61; Metazoa - 26; Fungi - 62; Plants - 88; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT2G07170.1p  transcript_id AT2G07170.1  protein_id AT2G07170.1p  transcript_id AT2G07170.1  
At2g07180	chr2:002983193	0.0	C/2983193-2983271,2982574-2982911,2982369-2982504,2982050-2982186,2981777-2981900,2981082-2981596	AT2G07180.1  CDS  gene_syn T25N22.14, T25N22_14  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G01020.1); Has 83377 Blast hits to 82332 proteins in 3112 species: Archae - 42; Bacteria - 7499; Metazoa - 37069; Fungi - 6338; Plants - 18225; Viruses - 294; Other Eukaryotes - 13910 (source: NCBI BLink).  protein_id AT2G07180.1p  transcript_id AT2G07180.1  protein_id AT2G07180.1p  transcript_id AT2G07180.1  
At2g07185	chr2:002986184	0.0	W/2986184-2987302	AT2G07185.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g07190	chr2:002987367	0.0	W/2987367-2987891,2988025-2988621,2988709-2988945	AT2G07190.1  CDS  gene_syn T25N22.15, T25N22_15  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1985 (InterPro:IPR015410); BEST Arabidopsis thaliana protein match is: Ulp1 protease family protein (TAIR:AT5G45570.1); Has 131 Blast hits to 131 proteins in 25 species: Archae - 0; Bacteria - 6; Metazoa - 6; Fungi - 1; Plants - 94; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT2G07190.1p  transcript_id AT2G07190.1  protein_id AT2G07190.1p  transcript_id AT2G07190.1  
At2g07200	chr2:002989205	0.0	W/2989205-2989320,2989539-2989878	AT2G07200.1  CDS  gene_syn T25N22.16, T25N22_16  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_component cellular_component|GO:0005575||ND  product cysteine-type peptidase  note cysteine-type peptidase; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653).  protein_id AT2G07200.1p  transcript_id AT2G07200.1  protein_id AT2G07200.1p  transcript_id AT2G07200.1  
At2g07210	chr2:002990398	0.0	C/2990398-2992102	AT2G07210.1  mRNA_TE_gene  pseudo  gene_syn T25N22.17  note Transposable element gene, Mutator-like transposase family, has a 7.8e-27 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At2g07212	chr2:002994238	0.0	W/2994238-2995474	AT2G07212.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g07213	chr2:002996582	0.0	W/2996582-2998054	AT2G07213.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G07215  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G07213.1  
At2g07215	chr2:002997704	0.0	C/2997704-2997889,2997507-2997608,2997020-2997334,2996776-2996910	AT2G07215.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10965.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07215.1p  transcript_id AT2G07215.1  protein_id AT2G07215.1p  transcript_id AT2G07215.1  
At2g07220	chr2:003000896	0.0	W/3000896-3001685	AT2G07220.1  mRNA_TE_gene  pseudo  gene_syn T25N22.18  note Transposable element gene, pseudogene, hypothetical protein, similar to MURA transposase of maize Mutator transposon  
At2g07230	chr2:003002170	0.0	W/3002170-3004642	AT2G07230.1  mRNA_TE_gene  pseudo  gene_syn T25N22.19, T25N22_19  note Transposable element gene, Mutator-like transposase family, has a 8.1e-59 P-value blast match to Q9SHN7 /450-633 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g07240	chr2:003011276	0.0	C/3011276-3011701,3010629-3010727,3010289-3010532,3009915-3010258,3009758-3009808,3009604-3009651,3009331-3009378,3009086-3009163,3008876-3008992,3008702-3008788,3008523-3008564,3008334-3008397,3007892-3008150,3007102-3007819	AT2G07240.1  CDS  gene_syn T13E11.1, T13E11_1  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_component cellular_component|GO:0005575||ND  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product cysteine-type peptidase  note cysteine-type peptidase; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1985 (InterPro:IPR015410), Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); Has 343 Blast hits to 264 proteins in 74 species: Archae - 0; Bacteria - 27; Metazoa - 49; Fungi - 59; Plants - 133; Viruses - 8; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT2G07240.1p  transcript_id AT2G07240.1  protein_id AT2G07240.1p  transcript_id AT2G07240.1  
At2g07250	chr2:003015826	0.0	W/3015826-3018650	AT2G07250.1  mRNA_TE_gene  pseudo  gene_syn T13E11.2, T13E11_2  note Transposable element gene, Mutator-like transposase family, has a 1.1e-76 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g07260	chr2:003019656	0.0	C/3019656-3021698	AT2G07260.1  mRNA_TE_gene  pseudo  gene_syn T13E11.3, T13E11_3  note Transposable element gene, similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT1G32830.1); similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT3G47270.1); similar to PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] (GB:XP_001197893.1); similar to PREDICTED: similar to Syne-1B [Strongylocentrotus purpuratus] (GB:XP_001185218.1); contains InterPro domain Protein of unknown function DUF1299; (InterPro:IPR010725)  
At2g07270	chr2:003024741	0.0	C/3024741-3025636	AT2G07270.1  mRNA_TE_gene  pseudo  gene_syn T13E11.4  note Transposable element gene, pseudogene, hypothetical protein  
At2g07280	chr2:003026398	0.0	W/3026398-3026452,3026724-3026824,3026950-3027072,3027114-3027557,3027646-3027672,3027755-3027823,3027979-3028029,3028116-3028166,3028262-3028300,3028454-3028501,3028880-3029074	AT2G07280.1  CDS  gene_syn T13E11.5, T13E11_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 11 Blast hits to 11 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07280.1p  transcript_id AT2G07280.1  protein_id AT2G07280.1p  transcript_id AT2G07280.1  
At2g07290	chr2:003029561	0.0	W/3029561-3029754,3029825-3030035	AT2G07290.1  CDS  gene_syn T13E11.6, T13E11_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07290.1p  transcript_id AT2G07290.1  protein_id AT2G07290.1p  transcript_id AT2G07290.1  
At2g07300	chr2:003030798	0.0	W/3030798-3031774	AT2G07300.1  mRNA_TE_gene  pseudo  gene_syn T13E11.7, T13E11_7  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35090.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At2g07310	chr2:003036242	0.0	C/3036242-3036387,3035926-3036070,3035432-3035473,3035153-3035340,3034797-3035067	AT2G07310.1  CDS  gene_syn T13E11.8, T13E11_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 52 Blast hits to 30 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07310.1p  transcript_id AT2G07310.1  protein_id AT2G07310.1p  transcript_id AT2G07310.1  
At2g07320	chr2:003037413	0.0	C/3037413-3042860	AT2G07320.1  mRNA_TE_gene  pseudo  gene_syn T13E11.9, T13E11_9  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G37880.1); similar to MuDRA-like transposase [Cucumis melo] (GB:AAS91797.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Zinc finger, PMZ-type; (InterPro:IPR006564); contains InterPro domain Zinc finger, SWIM-type; (InterPro:IPR007527)  
At2g07330	chr2:003043127	0.0	C/3043127-3044779	AT2G07330.1  mRNA_TE_gene  pseudo  gene_syn T13E11.10, T13E11_10  note Transposable element gene, Mutator-like transposase family, has a 1.9e-87 P-value blast match to Q9ZQK9 /304-464 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g07340	chr2:003045644	0.0	W/3045644-3045667,3045777-3045830,3046042-3046147,3046227-3046233,3046314-3046398,3046496-3046606	AT2G07340.1  CDS  gene_syn T13E11.11, T13E11_11  go_component prefoldin complex|GO:0016272||IEA  go_process protein folding|GO:0006457||IEA  go_function unfolded protein binding|GO:0051082||IEA  product prefoldin-related KE2 family protein  note prefoldin-related KE2 family protein; FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding; LOCATED IN: prefoldin complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin beta-like (InterPro:IPR002777), Prefoldin (InterPro:IPR009053); Has 227 Blast hits to 227 proteins in 106 species: Archae - 25; Bacteria - 0; Metazoa - 116; Fungi - 41; Plants - 23; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT2G07340.1p  transcript_id AT2G07340.1  protein_id AT2G07340.1p  transcript_id AT2G07340.1  
At2g07340	chr2:003045644	0.0	W/3045644-3045667,3045777-3045830,3046042-3046151,3046314-3046398,3046496-3046606	AT2G07340.2  CDS  gene_syn T13E11.11, T13E11_11  go_component prefoldin complex|GO:0016272||IEA  go_process protein folding|GO:0006457||IEA  go_function unfolded protein binding|GO:0051082||IEA  product prefoldin-related KE2 family protein  note prefoldin-related KE2 family protein; FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding; LOCATED IN: prefoldin complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin beta-like (InterPro:IPR002777), Prefoldin (InterPro:IPR009053); Has 202 Blast hits to 202 proteins in 90 species: Archae - 13; Bacteria - 2; Metazoa - 116; Fungi - 28; Plants - 23; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT2G07340.2p  transcript_id AT2G07340.2  protein_id AT2G07340.2p  transcript_id AT2G07340.2  
At2g07360	chr2:003057094	0.0	C/3057094-3057099,3056720-3057010,3056432-3056491,3056244-3056336,3055786-3056005,3055344-3055450,3055043-3055105,3054469-3054569,3054212-3054306,3054074-3054094,3053840-3053935,3053594-3053714,3053376-3053513,3053038-3053228,3052218-3052489,3051817-3051918,3051318-3051494,3051052-3051240,3050100-3050341,3049848-3049994,3049173-3049401,3048586-3048714,3048367-3048495,3048223-3048276,3047942-3048124,3047787-3047846,3047623-3047697	AT2G07360.1  CDS  gene_syn T13E11.13, T13E11_13  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function binding|GO:0005488||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  product SH3 domain-containing protein  note SH3 domain-containing protein; FUNCTIONS IN: binding; LOCATED IN: cytosol, nucleus, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Src homology-3 domain (InterPro:IPR001452), Armadillo-type fold (InterPro:IPR016024); Has 134 Blast hits to 94 proteins in 34 species: Archae - 0; Bacteria - 6; Metazoa - 12; Fungi - 11; Plants - 46; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT2G07360.1p  transcript_id AT2G07360.1  protein_id AT2G07360.1p  transcript_id AT2G07360.1  
At2g07362	chr2:003058918	0.0	W/3058918-3059043	AT2G07362.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G07362.1p  transcript_id AT2G07362.1  protein_id AT2G07362.1p  transcript_id AT2G07362.1  
At2g07363	chr2:003059157	0.0	C/3059157-3059306	AT2G07363.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G07363.1p  transcript_id AT2G07363.1  protein_id AT2G07363.1p  transcript_id AT2G07363.1  
At2g07365	chr2:003060291	0.0	C/3060291-3060852	AT2G07365.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 5.1e-23 P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element)  
At2g07380	chr2:003062345	0.0	W/3062345-3064837	AT2G07380.1  mRNA_TE_gene  pseudo  gene_syn T13E11.15, T13E11_15  note Transposable element gene, Mutator-like transposase family, has a 5.0e-62 P-value blast match to O22273 /233-373 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g07390	chr2:003067148	0.0	W/3067148-3067740	AT2G07390.1  mRNA_TE_gene  pseudo  gene_syn T13E11.16, T13E11_16  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30470.1); contains InterPro domain Protein of unknown function DUF730; (InterPro:IPR007989)  
At2g07395	chr2:003068217	0.0	C/3068217-3073286	AT2G07395.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g07400	chr2:003073733	0.0	C/3073733-3078367	AT2G07400.1  mRNA_TE_gene  pseudo  gene_syn T13E11.17, T13E11_17  note Transposable element gene, copia-like retrotransposon family, has a 6.9e-53 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)  
At2g07410	chr2:003079610	0.0	C/3079610-3083902	AT2G07410.1  mRNA_TE_gene  pseudo  gene_syn T13E11.18, T13E11_18  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.4e-118 P-value blast match to gb|AAL06422.1|AF378081_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At2g07420	chr2:003084468	0.0	C/3084468-3088832	AT2G07420.1  mRNA_TE_gene  pseudo  gene_syn T13E11.19, T13E11_19  note Transposable element gene, copia-like retrotransposon family, has a 2.1e-170 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element)  
At2g07430	chr2:003089468	0.0	C/3089468-3090731	AT2G07430.1  mRNA_TE_gene  pseudo  gene_syn T13E11.20, T13E11_20  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.0e-125 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g07440	chr2:003094727	0.0	C/3094727-3094750,3094269-3094339,3093821-3094136	AT2G07440.1  CDS  gene_syn T13E11.21, T13E11_21  go_component cellular_component|GO:0005575||ND  product two-component responsive regulator-related / response regulator protein-related  note two-component responsive regulator-related / response regulator protein-related; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ATRR3 (RESPONSE REGULATOR 3); transcription regulator/ two-component response regulator (TAIR:AT2G41310.1); Has 238 Blast hits to 238 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 238; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07440.1p  transcript_id AT2G07440.1  protein_id AT2G07440.1p  transcript_id AT2G07440.1  
At2g07450	chr2:003098331	0.0	W/3098331-3101095	AT2G07450.1  mRNA_TE_gene  pseudo  gene_syn T13E11.22, T13E11_22  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.1e-223 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g07455	chr2:003101927	0.0	W/3101927-3103849	AT2G07455.1  mRNA_TE_gene  pseudo  note Transposable element gene, Athila retroelement ORF1 protein -related, temporary automated functional assignment  
At2g07460	chr2:003107212	0.0	W/3107212-3109250	AT2G07460.1  mRNA_TE_gene  pseudo  gene_syn F27C21.9  note Transposable element gene, pseudogene, hypothetical protein  
At2g07470	chr2:003111539	0.0	C/3111539-3112023	AT2G07470.1  mRNA_TE_gene  pseudo  gene_syn F27C21.8  note Transposable element gene, pseudogene, hypothetical protein, similar to MURA transposase of maize Mutator transposon  
At2g07480	chr2:003113355	0.0	C/3113355-3114636	AT2G07480.1  mRNA_TE_gene  pseudo  gene_syn F27C21.11  note Transposable element gene, Mariner-like transposase family, has a 1.4e-101 P-value blast match to GB:AAC28384 mariner transposase (Mariner_TC1-element) (Glycine max)  
At2g07483	chr2:003115897	0.0	W/3115897-3116557	AT2G07483.1  mRNA_TE_gene  pseudo  gene_syn F27C21.1, F27C21_1  note Transposable element gene, CACTA-like transposase family (Tnp1/En/Spm), has a 7.6e-13 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)  
At2g07486	chr2:003117080	0.0	C/3117080-3117673	AT2G07486.1  mRNA_TE_gene  pseudo  gene_syn F27C21.5, F27C21_5  note Transposable element gene, pseudogene, similar to OSJNBb0043H09.1, putative insertion sequence-like orf; blastp match of 47% identity and 1.2e-20 P-value to GP|21740634|emb|CAD40195.1||AL606611 OSJNBb0043H09.1 {Oryza sativa (japonica cultivar-group)}  
At2g07490	chr2:003120079	0.0	W/3120079-3121379	AT2G07490.1  mRNA_TE_gene  pseudo  gene_syn F27C21.4, F27C21_4  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.1e-27 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g07500	chr2:003122308	0.0	W/3122308-3125129	AT2G07500.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 1.9e-70 P-value blast match to Q9SJR8 /172-333 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g07505	chr2:003125671	0.0	W/3125671-3125793,3125865-3126173	AT2G07505.1  CDS  gene_syn F9A16.18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G15690.1); Has 33 Blast hits to 33 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07505.1p  transcript_id AT2G07505.1  protein_id AT2G07505.1p  transcript_id AT2G07505.1  
At2g07510	chr2:003126522	0.0	C/3126522-3130605	AT2G07510.1  mRNA_TE_gene  pseudo  gene_syn F9A16.12, F9A16_12  function pseudogene of Ulp1 protease family protein  note Transposable element gene, pseudogene, expressed protein  
At2g07520	chr2:003135112	0.0	W/3135112-3135780	AT2G07520.1  mRNA_TE_gene  pseudo  gene_syn F9A16.11, F9A16_11  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15310.1); similar to Protein of unknown function (DUF635), putative [Medicago truncatula] (GB:ABE90282.1); contains InterPro domain Protein of unknown function DUF635; (InterPro:IPR006912); contains InterPro domain Bacterial adhesion; (InterPro:IPR008966)  
At2g07521	chr2:003136617	0.0	W/3136617-3136766	AT2G07521.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G07521.1p  transcript_id AT2G07521.1  protein_id AT2G07521.1p  transcript_id AT2G07521.1  
At2g07530	chr2:003144615	0.0	W/3144615-3145727	AT2G07530.1  mRNA_TE_gene  pseudo  gene_syn F9A16.10  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.4e-17 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g07540	chr2:003151868	0.0	C/3151868-3155956	AT2G07540.1  mRNA_TE_gene  pseudo  gene_syn F9A16.9  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 7.8e-90 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At2g07550	chr2:003161439	0.0	C/3161439-3165509	AT2G07550.1  mRNA_TE_gene  pseudo  gene_syn F9A16.8, F9A16_8  note Transposable element gene, copia-like retrotransposon family, has a 4.7e-313 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At2g07560	chr2:003173902	0.0	C/3173902-3173952,3173130-3173801,3172714-3173040,3171969-3172623,3171382-3171896,3171117-3171290,3170845-3171027,3170585-3170760,3170394-3170490	AT2G07560.1  CDS  gene_syn AHA6, Arabidopsis H(+)-ATPase 6, F9A16.7, F9A16_7  gene AHA6  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process ATP biosynthetic process|GO:0006754||IEA  go_process cation transport|GO:0006812||IEA  go_process metabolic process|GO:0008152||IEA  go_function ATPase activity|GO:0016887||ISS  product AHA6 (Arabidopsis H(+)-ATPase 6); ATPase  note Arabidopsis H(+)-ATPase 6 (AHA6); FUNCTIONS IN: ATPase activity; INVOLVED IN: cation transport, metabolic process, ATP biosynthetic process; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type, plasma-membrane proton-efflux (InterPro:IPR006534), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: AHA8 (Arabidopsis H(+)-ATPase 8); ATPase (TAIR:AT3G42640.1); Has 21305 Blast hits to 18550 proteins in 1834 species: Archae - 425; Bacteria - 11805; Metazoa - 3419; Fungi - 1563; Plants - 1109; Viruses - 3; Other Eukaryotes - 2981 (source: NCBI BLink).  protein_id AT2G07560.1p  transcript_id AT2G07560.1  protein_id AT2G07560.1p  transcript_id AT2G07560.1  
At2g07570	chr2:003175494	0.0	W/3175494-3179517	AT2G07570.1  mRNA_TE_gene  pseudo  gene_syn F9A16.6  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.2e-16 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At2g07580	chr2:003181874	0.0	W/3181874-3183672	AT2G07580.1  mRNA_TE_gene  pseudo  gene_syn F9A16.5  note Transposable element gene, pseudogene, hypothetical protein  
At2g07590	chr2:003183811	0.0	C/3183811-3185597	AT2G07590.1  mRNA_TE_gene  pseudo  gene_syn F9A16.4  note Transposable element gene, pseudogene, hypothetical protein  
At2g07600	chr2:003188396	0.0	C/3188396-3190016	AT2G07600.1  pseudogenic_transcript  pseudo  gene_syn F9A16.3  note pseudogene, NADH dehydrogenase, blastp match of 71% identity and 8.1e-159 P-value to GP|17932795|emb|CAC85134.1||AJ312951 NADH dehydrogenase subunit F {Cassinopsis ilicifolia}  
At2g07620	chr2:003200466	0.0	C/3200466-3206975	AT2G07620.1  mRNA_TE_gene  pseudo  gene_syn F9A16.1, F9A16_1  note Transposable element gene, pseudogene, similar to putative helicase, very low similarity to SP|Q9UUA2 DNA repair and recombination protein pif1, mitochondrial precursor {Schizosaccharomyces pombe}; blastp match of 39% identity and 1.0e-243 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)}  
At2g07630	chr2:003208710	0.0	C/3208710-3210809	AT2G07630.1  mRNA_TE_gene  pseudo  gene_syn F9A16.16, F9A16_16  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G31990.1); similar to hypothetical protein 31.t00031 [Brassica oleracea] (GB:ABD65118.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At2g07635	chr2:003214012	0.0	W/3214012-3217563	AT2G07635.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 2.6e-89 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus)  
At2g07640	chr2:003220739	0.0	W/3220739-3220879,3221004-3221226,3221316-3221422	AT2G07640.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product D2,D4-dienoyl-CoA reductase-related  note D2,D4-dienoyl-CoA reductase-related; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: SDRB (SHORT-CHAIN DEHYDROGENASE-REDUCTASE B); binding / catalytic/ oxidoreductase (TAIR:AT3G12800.1); Has 26053 Blast hits to 26044 proteins in 1676 species: Archae - 150; Bacteria - 16085; Metazoa - 690; Fungi - 1008; Plants - 612; Viruses - 2; Other Eukaryotes - 7506 (source: NCBI BLink).  protein_id AT2G07640.1p  transcript_id AT2G07640.1  protein_id AT2G07640.1p  transcript_id AT2G07640.1  
At2g07650	chr2:003222935	0.0	C/3222935-3225703	AT2G07650.1  mRNA_TE_gene  pseudo  gene_syn T5M2.3, T5M2_3  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 3.8e-41 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)  
At2g07660	chr2:003227034	0.0	C/3227034-3231700	AT2G07660.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 2.8e-303 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At2g07744	chr2:003234485	0.0	C/3234485-3237358	AT2G07744.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to putative helicase, low similarity to SP|Q9UUA2 DNA repair and recombination protein pif1, mitochondrial precursor {Schizosaccharomyces pombe}; blastp match of 43% identity and 8.3e-123 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)}  
At2g07742	chr2:003239657	0.0	C/3239657-3239728	AT2G07742.1  tRNA  gene_syn 51223.TRNA-ILE-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ile (anticodon: AAT)  transcript_id AT2G07742.1  
At2g07771	chr2:003239693	0.0	C/3239693-3240463	AT2G07771.2  CDS  go_component membrane|GO:0016020||IEA  go_process protein complex assembly|GO:0006461||IEA  go_process respiratory chain complex IV assembly|GO:0008535||IEA  go_process heme transport|GO:0015886||IEA  go_process cytochrome complex assembly|GO:0017004||IEA  go_function heme transporter activity|GO:0015232||IEA  product cytochrome c biogenesis protein-related  note cytochrome c biogenesis protein-related; FUNCTIONS IN: heme transporter activity; INVOLVED IN: respiratory chain complex IV assembly, cytochrome complex assembly, heme transport, protein complex assembly; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Cytochrome c-type biogenesis protein CcmC (InterPro:IPR003557), Cytochrome c assembly protein (InterPro:IPR002541); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG00900.1); Has 3002 Blast hits to 3002 proteins in 595 species: Archae - 20; Bacteria - 1118; Metazoa - 2; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 1778 (source: NCBI BLink).  protein_id AT2G07771.2p  transcript_id AT2G07771.2  protein_id AT2G07771.2p  transcript_id AT2G07771.2  
At2g07773	chr2:003240838	0.0	C/3240838-3241659	AT2G07773.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG00910.1); Has 118 Blast hits to 118 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 118; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07773.1p  transcript_id AT2G07773.1  protein_id AT2G07773.1p  transcript_id AT2G07773.1  
At2g07747	chr2:003244557	0.0	C/3244557-3245159	AT2G07747.1  pseudogenic_transcript  pseudo  note pseudogene, maturase (MATR), identical to maturase (Arabidopsis thaliana) GP:6851020; blastp match of 92% identity and 1.9e-70 P-value to GP|6513801|gb|AAF14776.1|AF197784_1|AF197784 maturase {Pachysandra procumbens}  
At2g07776	chr2:003246037	0.0	C/3246037-3246366	AT2G07776.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG00530.1); Has 10 Blast hits to 10 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07776.2p  transcript_id AT2G07776.2  protein_id AT2G07776.2p  transcript_id AT2G07776.2  
At2g07749	chr2:003247234	0.0	W/3247234-3247974	AT2G07749.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-dependent RNA polymerase, mitoviral (InterPro:IPR008686); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG01110.1); Has 46 Blast hits to 46 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 1; Plants - 16; Viruses - 29; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07749.1p  transcript_id AT2G07749.1  protein_id AT2G07749.1p  transcript_id AT2G07749.1  
At2g07812	chr2:003249077	0.0	C/3249077-3249394	AT2G07812.1  pseudogenic_transcript  pseudo  function Pseudogene of ATMG01100  
At2g07777	chr2:003250757	0.0	C/3250757-3251545	AT2G07777.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG01090.1); Has 94 Blast hits to 94 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07777.1p  transcript_id AT2G07777.1  protein_id AT2G07777.1p  transcript_id AT2G07777.1  
At2g07671	chr2:003251856	0.0	C/3251856-3252113	AT2G07671.1  CDS  go_component proton-transporting two-sector ATPase complex, proton-transporting domain|GO:0033177||IEA  go_component proton-transporting ATP synthase complex, coupling factor F(o)|GO:0045263||IEA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_function hydrogen ion transmembrane transporter activity|GO:0015078||IEA  go_process proton transport|GO:0015992||ISS  go_function ATPase activity|GO:0016887||ISS  product H+-transporting two-sector ATPase, C subunit family protein  note H+-transporting two-sector ATPase, C subunit family protein; FUNCTIONS IN: hydrogen ion transmembrane transporter activity, ATPase activity; INVOLVED IN: proton transport, ATP synthesis coupled proton transport; LOCATED IN: proton-transporting ATP synthase complex, coupling factor F(o), proton-transporting two-sector ATPase complex, proton-transporting domain; CONTAINS InterPro DOMAIN/s: ATPase, F0/V0 complex, subunit C (InterPro:IPR002379), ATPase, F0 complex, subunit C (InterPro:IPR000454); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG01080.1); Has 2703 Blast hits to 2703 proteins in 657 species: Archae - 0; Bacteria - 605; Metazoa - 383; Fungi - 295; Plants - 192; Viruses - 0; Other Eukaryotes - 1228 (source: NCBI BLink).  protein_id AT2G07671.1p  transcript_id AT2G07671.1  protein_id AT2G07671.1p  transcript_id AT2G07671.1  
At2g07779	chr2:003254777	0.0	C/3254777-3255052	AT2G07779.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G07779.1p  transcript_id AT2G07779.1  protein_id AT2G07779.1p  transcript_id AT2G07779.1  
At2g07743	chr2:003255832	0.0	C/3255832-3255905	AT2G07743.1  tRNA  gene_syn 51223.TRNA-ASP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asp (anticodon: GTC)  transcript_id AT2G07743.1  
At2g07672	chr2:003257585	0.0	W/3257585-3258064	AT2G07672.1  CDS  gene_syn T17H1.1, T17H1_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG01050.1); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07672.1p  transcript_id AT2G07672.1  protein_id AT2G07672.1p  transcript_id AT2G07672.1  
At2g07664	chr2:003260447	0.0	W/3260447-3260769	AT2G07664.1  pseudogenic_transcript  pseudo  function Pseudogene of ATMG01040  
At2g07684	chr2:003262235	0.0	C/3262235-3262345	AT2G07684.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G07684.1p  transcript_id AT2G07684.1  protein_id AT2G07684.1p  transcript_id AT2G07684.1  
At2g07673	chr2:003266578	0.0	W/3266578-3266898	AT2G07673.1  CDS  gene_syn T17H1.2, T17H1_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG01030.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07673.1p  transcript_id AT2G07673.1  protein_id AT2G07673.1p  transcript_id AT2G07673.1  
At2g07745	chr2:003268807	0.0	W/3268807-3268886	AT2G07745.1  tRNA  gene_syn 51141.TRNA-TYR-1, 51223.TRNA-TYR-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT2G07745.1  
At2g07674	chr2:003269151	0.0	W/3269151-3269906	AT2G07674.1  CDS  gene_syn T5M2.8, T5M2_8  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG01010.1); Has 50 Blast hits to 50 proteins in 20 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 0; Plants - 36; Viruses - 5; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G07674.1p  transcript_id AT2G07674.1  protein_id AT2G07674.1p  transcript_id AT2G07674.1  
At2g07751	chr2:003270008	0.0	W/3270008-3270364	AT2G07751.1  CDS  gene_syn 51141.TRNA-ILE-1  go_component endomembrane system|GO:0012505||IEA  go_function NADH dehydrogenase (ubiquinone) activity|GO:0008137||IEA  go_process mitochondrial electron transport, NADH to ubiquinone|GO:0006120||ISS  go_function NADH dehydrogenase (ubiquinone) activity|GO:0008137||ISS  product NADH-ubiquinone oxidoreductase chain 3, putative  note NADH-ubiquinone oxidoreductase chain 3, putative; FUNCTIONS IN: NADH dehydrogenase (ubiquinone) activity; INVOLVED IN: mitochondrial electron transport, NADH to ubiquinone; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 (InterPro:IPR000440); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG00990.1); Has 17441 Blast hits to 17441 proteins in 3818 species: Archae - 24; Bacteria - 1669; Metazoa - 13271; Fungi - 106; Plants - 504; Viruses - 0; Other Eukaryotes - 1867 (source: NCBI BLink).  protein_id AT2G07751.1p  transcript_id AT2G07751.1  protein_id AT2G07751.1p  transcript_id AT2G07751.1  
At2g07675	chr2:003270410	0.0	W/3270410-3270787	AT2G07675.1  CDS  gene_syn T17H1.4, T17H1_4  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_component small ribosomal subunit|GO:0015935||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein S12 mitochondrial family protein  note ribosomal protein S12 mitochondrial family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, small ribosomal subunit, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein S12/S23 (InterPro:IPR006032), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Ribosomal protein S12, bacterial-type (InterPro:IPR005679); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG00980.1); Has 6427 Blast hits to 6427 proteins in 1981 species: Archae - 12; Bacteria - 3085; Metazoa - 107; Fungi - 86; Plants - 987; Viruses - 0; Other Eukaryotes - 2150 (source: NCBI BLink).  protein_id AT2G07675.1p  transcript_id AT2G07675.1  protein_id AT2G07675.1p  transcript_id AT2G07675.1  
At2g07767	chr2:003272149	0.0	W/3272149-3272518	AT2G07767.1  mRNA_TE_gene  pseudo  function similarity to putative non-LTR retroelement reverse transcriptase  note Transposable element gene, expressed protein, similar to putative non-LTR retroelement reverse transcriptase  
At2g07676	chr2:003272619	0.0	W/3272619-3272975	AT2G07676.1  CDS  gene_syn T17H1.5, T17H1_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG00970.1); Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07676.1p  transcript_id AT2G07676.1  protein_id AT2G07676.1p  transcript_id AT2G07676.1  
At2g07768	chr2:003273584	0.0	W/3273584-3273642,3273749-3274154	AT2G07768.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_component membrane|GO:0016020||IEA  go_process heme transport|GO:0015886||IEA  go_process cytochrome complex assembly|GO:0017004||IEA  go_function heme transporter activity|GO:0015232||IEA  product heme transporter  note heme transporter; FUNCTIONS IN: heme transporter activity; INVOLVED IN: cytochrome complex assembly, heme transport; LOCATED IN: mitochondrion, membrane; CONTAINS InterPro DOMAIN/s: Cytochrome c-type biogenesis protein (InterPro:IPR003567), Cytochrome c-type biogenesis protein CcbS (InterPro:IPR003569); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG00960.1).  protein_id AT2G07768.1p  transcript_id AT2G07768.1  protein_id AT2G07768.1p  transcript_id AT2G07768.1  
At2g07769	chr2:003275010	0.0	W/3275010-3275362	AT2G07769.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 6.2e-18 P-value blast match to gb|AAO73523.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At2g07746	chr2:003276440	0.0	W/3276440-3276511	AT2G07746.1  tRNA  gene_syn 51141.TRNA-GLN-1, 51223.TRNA-GLN-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gln (anticodon: TTG)  transcript_id AT2G07746.1  
At2g07677	chr2:003278376	0.0	W/3278376-3280384	AT2G07677.1  pseudogenic_transcript  pseudo  gene_syn T17H1.6, T17H1_6  note auxin-responsive factor (ARF) -related, low similarity to auxin response factor 10 (Arabidopsis thaliana) GI:6165644; blastp match of 82% identity and 6.9e-77 P-value to GP|3717296|emb|CAA03738.1||A63701 unnamed protein product {unidentified}  
At2g07748	chr2:003280863	0.0	W/3280863-3280936	AT2G07748.1  tRNA  gene_syn 51141.TRNA-TRP-1, 51223.TRNA-TRP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Trp (anticodon: CCA)  transcript_id AT2G07748.1  
At2g07678	chr2:003281097	0.0	W/3281097-3281834	AT2G07678.1  CDS  gene_syn T17H1.7, T17H1_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG00920.1); Has 13 Blast hits to 13 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07678.1p  transcript_id AT2G07678.1  protein_id AT2G07678.1p  transcript_id AT2G07678.1  
At2g07669	chr2:003283224	0.0	W/3283224-3283553	AT2G07669.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07669.1p  transcript_id AT2G07669.1  protein_id AT2G07669.1p  transcript_id AT2G07669.1  
At2g07781	chr2:003288572	0.0	W/3288572-3289016	AT2G07781.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At2g07679	chr2:003289035	0.0	W/3289035-3289106,3289429-3289530	AT2G07679.1  CDS  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein, putative  note ribosomal protein, putative; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G07773.1); Has 113 Blast hits to 113 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07679.1p  transcript_id AT2G07679.1  protein_id AT2G07679.1p  transcript_id AT2G07679.1  
At2g07782	chr2:003289734	0.0	W/3289734-3290190	AT2G07782.1  pseudogenic_transcript  pseudo  note pseudogene, similar to NADH-ubiquinone oxidoreductase chain 6 (EC 1.6.5.3). (Field mustard), blastp match of 92% identity and 3.6e-27 P-value to SP|Q01825|NU6M_ARATH NADH-ubiquinone oxidoreductase chain 6 (EC 1.6.5.3). (Field mustard) {Brassica campestris}  
At2g07681	chr2:003290231	0.0	W/3290231-3291001	AT2G07681.1  CDS  go_component membrane|GO:0016020||IEA  go_process protein complex assembly|GO:0006461||IEA  go_process respiratory chain complex IV assembly|GO:0008535||IEA  go_process heme transport|GO:0015886||IEA  go_process cytochrome complex assembly|GO:0017004||IEA  go_function heme transporter activity|GO:0015232||IEA  go_component membrane|GO:0016020||ISS  go_process protein complex assembly|GO:0006461||ISS  go_process respiratory chain complex IV assembly|GO:0008535||ISS  product cytochrome c biogenesis protein, putative  note cytochrome c biogenesis protein, putative; FUNCTIONS IN: heme transporter activity; INVOLVED IN: cytochrome complex assembly, respiratory chain complex IV assembly, heme transport, protein complex assembly; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Cytochrome c assembly protein (InterPro:IPR002541), Cytochrome c-type biogenesis protein CcmC (InterPro:IPR003557); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG00900.1); Has 3010 Blast hits to 3010 proteins in 596 species: Archae - 20; Bacteria - 1120; Metazoa - 2; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 1784 (source: NCBI BLink).  protein_id AT2G07681.1p  transcript_id AT2G07681.1  protein_id AT2G07681.1p  transcript_id AT2G07681.1  
At2g07778	chr2:003290966	0.0	W/3290966-3291037	AT2G07778.1  tRNA  gene_syn 51141.TRNA-ILE-1, 51223.TRNA-ILE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ile (anticodon: AAT)  transcript_id AT2G07778.1  
At2g07682	chr2:003292516	0.0	C/3292516-3297403	AT2G07682.1  mRNA_TE_gene  pseudo  gene_syn T5M2.17  note Transposable element gene, gypsy-like retrotransposon family, has a 2.1e-65 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At2g07783	chr2:003297896	0.0	W/3297896-3300043	AT2G07783.1  pseudogenic_transcript  pseudo  note pseudogene, similar to Ccl1, blastp match of 86% identity and 6.4e-177 P-value to GP|1694629|dbj|BAA12329.1||D84373 Ccl1 {Brassica napus}  
At2g07772	chr2:003301588	0.0	C/3301588-3301804,3301356-3301419,3300978-3301236	AT2G07772.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07772.1p  transcript_id AT2G07772.1  protein_id AT2G07772.1p  transcript_id AT2G07772.1  
At2g07683	chr2:003301883	0.0	W/3301883-3303367	AT2G07683.1  mRNA_TE_gene  pseudo  gene_syn T5M2.15, T5M2_15  note Transposable element gene, copia-like retrotransposon family, has a 2.2e-110 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)  
At2g07752	chr2:003303244	0.0	C/3303244-3303315	AT2G07752.1  tRNA  gene_syn 51141.TRNA-GLU-1, 51223.TRNA-GLU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Glu (anticodon: TTC)  transcript_id AT2G07752.1  
At2g07753	chr2:003303354	0.0	C/3303354-3303428	AT2G07753.1  tRNA  gene_syn 51141.TRNA-TYR-2, 51223.TRNA-TYR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT2G07753.1  
At2g07754	chr2:003303785	0.0	C/3303785-3303822	AT2G07754.1  tRNA  gene_syn 51141.TRNA-SER-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: GCT)  transcript_id AT2G07754.1  
At2g07774	chr2:003304370	0.0	C/3304370-3304573,3303929-3304075	AT2G07774.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G07774.1p  transcript_id AT2G07774.1  protein_id AT2G07774.1p  transcript_id AT2G07774.1  
At2g07685	chr2:003307942	0.0	W/3307942-3309231	AT2G07685.1  mRNA_TE_gene  pseudo  gene_syn T17H1.11, T17H1_11  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 8.2e-13 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g07686	chr2:003309362	0.0	C/3309362-3311374	AT2G07686.1  mRNA_TE_gene  pseudo  gene_syn T17H1.14  note Transposable element gene, gypsy-like retrotransposon family, has a 4.3e-28 P-value blast match to GB:CAB39733 rotease, reverse transcriptase, ribonuclease H, integrase (Gypsy_Ty3-element) (Drosophila buzzatii)  
At2g07687	chr2:003311854	0.0	C/3311854-3312651	AT2G07687.1  CDS  gene_syn T17H1.13, T17H1_13  go_component membrane|GO:0016020||IEA  go_process mitochondrial electron transport, cytochrome c to oxygen|GO:0006123||IEA  go_function cytochrome-c oxidase activity|GO:0004129||IEA  go_component membrane|GO:0016020||ISS  go_function cytochrome-c oxidase activity|GO:0004129||ISS  product cytochrome c oxidase subunit 3  note cytochrome c oxidase subunit 3; FUNCTIONS IN: cytochrome-c oxidase activity; INVOLVED IN: mitochondrial electron transport, cytochrome c to oxygen; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase, subunit III (InterPro:IPR000298); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG00730.1); Has 20036 Blast hits to 20023 proteins in 4107 species: Archae - 36; Bacteria - 2753; Metazoa - 13063; Fungi - 300; Plants - 457; Viruses - 0; Other Eukaryotes - 3427 (source: NCBI BLink).  protein_id AT2G07687.1p  transcript_id AT2G07687.1  protein_id AT2G07687.1p  transcript_id AT2G07687.1  
At2g07811	chr2:003313598	0.0	C/3313598-3314901	AT2G07811.1  pseudogenic_transcript  pseudo  function pseudogene of mitochondrial protein  
At2g07784	chr2:003317798	0.0	C/3317798-3318634	AT2G07784.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to reverse transcriptase, blastp match of 68% identity and 1.0e-16 P-value to GP|18643970|emb|CAD22561.1||AJ417799 reverse transcriptase {Brassica rapa subsp. rapa}  
At2g07755	chr2:003328670	0.0	C/3328670-3328742	AT2G07755.1  tRNA  gene_syn 51141.TRNA-MET-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Met (anticodon: CAT)  transcript_id AT2G07755.1  
At2g07688	chr2:003331570	0.0	C/3331570-3332664	AT2G07688.1  pseudogenic_transcript  pseudo  gene_syn T5E7.23  note pseudogene, similar to Photosystem Q(B) protein (32 kDa thylakoid membrane protein) (Photosystem II protein D1)., blastp match of 82% identity and 4.9e-79 P-value to SP|Q9MUW0|PSBA_MESVI Photosystem Q(B) protein (32 kDa thylakoid membrane protein) (Photosystem II protein D1). {Mesostigma viride}  
At2g07792	chr2:003332678	0.0	W/3332678-3332759	AT2G07792.1  tRNA  gene_syn 49301.TRNA-TYR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT2G07792.1  
At2g07689	chr2:003336109	0.0	W/3336109-3336753	AT2G07689.1  CDS  gene_syn T18C6.13  go_component membrane|GO:0016020|17432890|IDA  go_process ATP synthesis coupled electron transport|GO:0042773||IEA  go_function NADH dehydrogenase (ubiquinone) activity|GO:0008137||IEA  go_process mitochondrial electron transport, NADH to ubiquinone|GO:0006120||ISS  go_function NADH dehydrogenase (ubiquinone) activity|GO:0008137||ISS  product NADH-ubiquinone oxidoreductase, putative  note NADH-ubiquinone oxidoreductase, putative; FUNCTIONS IN: NADH dehydrogenase (ubiquinone) activity; INVOLVED IN: mitochondrial electron transport, NADH to ubiquinone, ATP synthesis coupled electron transport; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: NADH/Ubiquinone/plastoquinone (complex I) (InterPro:IPR001750); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG01320.1); Has 59428 Blast hits to 59398 proteins in 15002 species: Archae - 364; Bacteria - 7614; Metazoa - 37376; Fungi - 208; Plants - 8355; Viruses - 0; Other Eukaryotes - 5511 (source: NCBI BLink).  protein_id AT2G07689.1p  transcript_id AT2G07689.1  protein_id AT2G07689.1p  transcript_id AT2G07689.1  
At2g07808	chr2:003336948	0.0	W/3336948-3337336	AT2G07808.1  pseudogenic_transcript  pseudo  function Pseudogene of ATMG01330  
At2g07691	chr2:003339907	0.0	C/3339907-3340317	AT2G07691.1  CDS  gene_syn T18C6.11, T18C6_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG01310.1); Has 8 Blast hits to 8 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07691.1p  transcript_id AT2G07691.1  protein_id AT2G07691.1p  transcript_id AT2G07691.1  
At2g07692	chr2:003340706	0.0	C/3340706-3341116	AT2G07692.1  CDS  gene_syn T18C6.10, T18C6_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG01300.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07692.1p  transcript_id AT2G07692.1  protein_id AT2G07692.1p  transcript_id AT2G07692.1  
At2g07693	chr2:003341392	0.0	W/3341392-3342812	AT2G07693.1  mRNA_TE_gene  pseudo  gene_syn T18C6.14, T18C6_14  note Transposable element gene, copia-like retrotransposon family, has a 6.2e-16 P-value blast match to GB:CAA37924 orf 2 (Ty1_Copia-element) (Arabidopsis thaliana)  
At2g07694	chr2:003344338	0.0	C/3344338-3345303	AT2G07694.1  mRNA_TE_gene  pseudo  gene_syn T18C6.9  note Transposable element gene, copia-like retrotransposon family, has a 5.1e-50 P-value blast match to GB:BAA11674 ORF(AA 1-1338) (Ty1_Copia-element) (Nicotiana tabacum)  
At2g07695	chr2:003346951	0.0	W/3346951-3347826	AT2G07695.1  CDS  gene_syn T18C6.1, T18C6_1  go_component integral to membrane|GO:0016021||IEA  go_process electron transport chain|GO:0022900||IEA  go_process respiratory electron transport chain|GO:0022904||IEA  go_function cytochrome-c oxidase activity|GO:0004129||IEA  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component membrane|GO:0016020||ISS  go_function cytochrome-c oxidase activity|GO:0004129||ISS  go_function copper ion binding|GO:0005507||ISS  product cytochrome c oxidase subunit II, putative  note cytochrome c oxidase subunit II, putative; FUNCTIONS IN: electron carrier activity, cytochrome-c oxidase activity, copper ion binding, heme binding; INVOLVED IN: electron transport chain, respiratory electron transport chain; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Cytochrome C oxidase subunit II-like, transmembrane region (InterPro:IPR015964), Cytochrome C oxidase subunit II, transmembrane region (InterPro:IPR011759); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG01280.1); Has 12410 Blast hits to 12408 proteins in 4501 species: Archae - 0; Bacteria - 271; Metazoa - 10080; Fungi - 326; Plants - 261; Viruses - 0; Other Eukaryotes - 1472 (source: NCBI BLink).  protein_id AT2G07695.1p  transcript_id AT2G07695.1  protein_id AT2G07695.1p  transcript_id AT2G07695.1  
At2g07785	chr2:003348114	0.0	W/3348114-3348413	AT2G07785.1  CDS  go_component membrane|GO:0016020|17432890|IDA  go_function molecular_function|GO:0003674||ND  product NADH-ubiquinone oxidoreductase, putative  note NADH-ubiquinone oxidoreductase, putative; FUNCTIONS IN: molecular_function unknown; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Respiratory-chain NADH dehydrogenase, subunit 1 (InterPro:IPR001694); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG01275.1); Has 21817 Blast hits to 21817 proteins in 6019 species: Archae - 56; Bacteria - 1959; Metazoa - 17016; Fungi - 201; Plants - 493; Viruses - 0; Other Eukaryotes - 2092 (source: NCBI BLink).  protein_id AT2G07785.1p  transcript_id AT2G07785.1  protein_id AT2G07785.1p  transcript_id AT2G07785.1  
At2g07696	chr2:003351340	0.0	C/3351340-3351786	AT2G07696.1  CDS  gene_syn T18C6.8, T18C6_8  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_component small ribosomal subunit|GO:0015935||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein S7 family protein  note ribosomal protein S7 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, small ribosomal subunit, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein S7, bacterial-type (InterPro:IPR005717), Ribosomal protein S7 (InterPro:IPR000235); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG01270.1); Has 6222 Blast hits to 6222 proteins in 1868 species: Archae - 47; Bacteria - 3037; Metazoa - 93; Fungi - 20; Plants - 953; Viruses - 0; Other Eukaryotes - 2072 (source: NCBI BLink).  protein_id AT2G07696.1p  transcript_id AT2G07696.1  protein_id AT2G07696.1p  transcript_id AT2G07696.1  
At2g07813	chr2:003353251	0.0	W/3353251-3353862	AT2G07813.1  pseudogenic_transcript  pseudo  function Pseudogene of ATMG01260  
At2g07697	chr2:003354014	0.0	C/3354014-3357474	AT2G07697.1  mRNA_TE_gene  pseudo  gene_syn T18C6.7  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.9e-23 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At2g07798	chr2:003358035	0.0	W/3358035-3358106,3358209-3358245,3359201-3359308,3359416-3359531,3359608-3359621,3359820-3359911,3360697-3360974	AT2G07798.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG01220.1).  protein_id AT2G07798.1p  transcript_id AT2G07798.1  protein_id AT2G07798.1p  transcript_id AT2G07798.1  
At2g07826	chr2:003361110	0.0	W/3361110-3361415	AT2G07826.1  pseudogenic_transcript  pseudo  function Pseudogene of ATMG01210  
At2g07698	chr2:003361474	0.0	W/3361474-3362300,3362522-3364028	AT2G07698.1  CDS  gene_syn T18C6.2, T18C6_2  go_component nucleolus|GO:0005730|15496452|IDA  go_component mitochondrion|GO:0005739|15276431|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_process proton transport|GO:0015992||IEA  go_process ATP metabolic process|GO:0046034||IEA  go_component mitochondrion|GO:0005739|11743115|IDA  go_function poly(U) binding|GO:0008266|17511964|IDA  go_function hydrogen ion transporting ATP synthase activity, rotational mechanism|GO:0046933||ISS  product ATP synthase alpha chain, mitochondrial, putative  note ATP synthase alpha chain, mitochondrial, putative; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, poly(U) binding; INVOLVED IN: proton transport, ATP metabolic process, ATP synthesis coupled proton transport; LOCATED IN: in 7 components; EXPRESSED IN: male gametophyte, juvenile leaf, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, alpha subunit (InterPro:IPR005294), ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal (InterPro:IPR000793), ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR004100), ATPase, F1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR018118), ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding (InterPro:IPR000194); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG01190.1); Has 30965 Blast hits to 30938 proteins in 7364 species: Archae - 565; Bacteria - 13489; Metazoa - 1212; Fungi - 461; Plants - 6725; Viruses - 0; Other Eukaryotes - 8513 (source: NCBI BLink).  protein_id AT2G07698.1p  transcript_id AT2G07698.1  protein_id AT2G07698.1p  transcript_id AT2G07698.1  
At2g07667	chr2:003364539	0.0	W/3364539-3364724,3365020-3365190,3365342-3365377,3365753-3365944,3366034-3366062,3366242-3366284	AT2G07667.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG01180.1).  protein_id AT2G07667.1p  transcript_id AT2G07667.1  protein_id AT2G07667.1p  transcript_id AT2G07667.1  
At2g07699	chr2:003368151	0.0	W/3368151-3369308	AT2G07699.1  pseudogenic_transcript  pseudo  gene_syn T18C6.3  note pseudogene, similar to ATPase subunit 6, blastp match of 80% identity and 7.4e-154 P-value to GP|515963|gb|AAA72061.1||M24672 ATPase subunit 6 {Raphanus sativus}  
At2g07793	chr2:003369354	0.0	W/3369354-3369440	AT2G07793.1  tRNA  gene_syn 49301.TRNA-SER-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: TGA)  transcript_id AT2G07793.1  
At2g07701	chr2:003371832	0.0	W/3371832-3372152	AT2G07701.1  CDS  gene_syn T18C6.4, T18C6_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG01150.1); Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07701.1p  transcript_id AT2G07701.1  protein_id AT2G07701.1p  transcript_id AT2G07701.1  
At2g07702	chr2:003372697	0.0	W/3372697-3373155	AT2G07702.1  CDS  gene_syn T5E7.20  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG01140.1); Has 9 Blast hits to 9 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07702.1p  transcript_id AT2G07702.1  protein_id AT2G07702.1p  transcript_id AT2G07702.1  
At2g07703	chr2:003375516	0.0	W/3375516-3375878	AT2G07703.1  mRNA_TE_gene  pseudo  gene_syn T18C6.6  note Transposable element gene, copia-like retrotransposon family, has a 5.2e-10 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element)  
At2g07704	chr2:003379162	0.0	C/3379162-3379885	AT2G07704.1  mRNA_TE_gene  pseudo  gene_syn T18C6.29  note Transposable element gene, copia-like retrotransposon family, has a 5.8e-50 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At2g07705	chr2:003380744	0.0	W/3380744-3380944	AT2G07705.1  CDS  gene_syn T18C6.31, T18C6_31  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65346.1); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07705.1p  transcript_id AT2G07705.1  protein_id AT2G07705.1p  transcript_id AT2G07705.1  
At2g07794	chr2:003383404	0.0	C/3383404-3383477	AT2G07794.1  tRNA  gene_syn 49301.TRNA-MET-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Met (anticodon: CAT)  transcript_id AT2G07794.1  
At2g07706	chr2:003383926	0.0	C/3383926-3384226,3383696-3383806,3383507-3383562,3383320-3383375,3383026-3383136,3382708-3382814,3382413-3382591	AT2G07706.1  CDS  gene_syn T18C6.28, T18C6_28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG00470.1); Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07706.1p  transcript_id AT2G07706.1  protein_id AT2G07706.1p  transcript_id AT2G07706.1  
At2g07707	chr2:003386292	0.0	W/3386292-3386768	AT2G07707.1  CDS  gene_syn T18C6.15, T18C6_15  go_component mitochondrion|GO:0005739|15276431|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_function hydrogen ion transmembrane transporter activity|GO:0015078||IEA  go_function hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances|GO:0016820||IEA  product hydrogen ion transmembrane transporter/ hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances  note hydrogen ion transmembrane transporter/ hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances; FUNCTIONS IN: hydrogen ion transmembrane transporter activity, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: mitochondrion, vacuole, membrane; EXPRESSED IN: cultured cell, leaf; CONTAINS InterPro DOMAIN/s: ATPase, F0 complex, subunit 8, mitochondrial, plant (InterPro:IPR003319), Protein of unknown function DUF1082, plant mitochondria (InterPro:IPR009455); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG00480.1); Has 167 Blast hits to 167 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 159; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT2G07707.1p  transcript_id AT2G07707.1  protein_id AT2G07707.1p  transcript_id AT2G07707.1  
At2g07708	chr2:003387351	0.0	W/3387351-3387776	AT2G07708.1  CDS  gene_syn T18C6.16, T18C6_16  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG00500.1); Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07708.1p  transcript_id AT2G07708.1  protein_id AT2G07708.1p  transcript_id AT2G07708.1  
At2g07709	chr2:003388454	0.0	W/3388454-3394516	AT2G07709.1  pseudogenic_transcript  pseudo  gene_syn T18C6.17  note pseudogene, similar to NADH dehydrogenase, blastp match of 93% identity and 1.1e-175 P-value to GP|485862|emb|CAA52952.1||X75036 NADH dehydrogenase {Triticum aestivum}  
At2g07711	chr2:003397158	0.0	C/3397158-3399434	AT2G07711.1  pseudogenic_transcript  pseudo  gene_syn T18C6.27  note pseudogene, similar to NADH dehydrogenase subunit 5, blastp match of 97% identity and 2.2e-244 P-value to GP|1066145|dbj|BAA07176.1||D37958 NADH dehydrogenase subunit 5 {Malus x domestica}  
At2g07786	chr2:003399657	0.0	C/3399657-3399912	AT2G07786.1  pseudogenic_transcript  pseudo  note pseudogene, similar to NADH dehydrogenase (ubiquinone), blastp match of 91% identity and 9.4e-39 P-value to GP|903844|gb|AAA70292.1||M63034 NADH dehydrogenase (ubiquinone) {Oenothera berteriana}  
At2g07712	chr2:003400730	0.0	C/3400730-3402757	AT2G07712.1  pseudogenic_transcript  pseudo  gene_syn T18C6.26  note pseudogene, similar to maturase-related protein, blastp match of 86% identity and 2.9e-305 P-value to GP|840924|gb|AAA67711.1||U09988 maturase-related protein {Glycine max}  
At2g07663	chr2:003403717	0.0	C/3403717-3404046	AT2G07663.1  pseudogenic_transcript  pseudo  function Pseudogene of AT2G07776  
At2g07713	chr2:003407218	0.0	W/3407218-3407586	AT2G07713.1  CDS  gene_syn T18C6.18, T18C6_18  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG00540.1); Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07713.1p  transcript_id AT2G07713.1  protein_id AT2G07713.1p  transcript_id AT2G07713.1  
At2g07714	chr2:003408466	0.0	C/3408466-3408506,3407671-3408220	AT2G07714.1  CDS  gene_syn T18C6.25, T18C6_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product transcription factor-related  note transcription factor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG00550.1); Has 61 Blast hits to 61 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G07714.1p  transcript_id AT2G07714.1  protein_id AT2G07714.1p  transcript_id AT2G07714.1  
At2g07715	chr2:003411180	0.0	W/3411180-3412103	AT2G07715.1  CDS  gene_syn T18C6.19, T18C6_19  go_component intracellular|GO:0005622||IEA  go_component mitochondrion|GO:0005739||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L2, putative  note ribosomal protein L2, putative; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: mitochondrion, ribosome, intracellular, large ribosomal subunit; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein L2 (InterPro:IPR002171); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG00560.1); Has 5846 Blast hits to 5846 proteins in 1806 species: Archae - 0; Bacteria - 3004; Metazoa - 5; Fungi - 81; Plants - 825; Viruses - 0; Other Eukaryotes - 1931 (source: NCBI BLink).  protein_id AT2G07715.1p  transcript_id AT2G07715.1  protein_id AT2G07715.1p  transcript_id AT2G07715.1  
At2g07716	chr2:003413955	0.0	W/3413955-3414838	AT2G07716.1  pseudogenic_transcript  pseudo  gene_syn T18C6.20  note pseudogene, similar to orfx, blastp match of 85% identity and 5.5e-116 P-value to GP|287897|emb|CAA42649.1||X60046 orfx {Oenothera berteriana}  
At2g07717	chr2:003418229	0.0	W/3418229-3424177	AT2G07717.1  pseudogenic_transcript  pseudo  gene_syn T18C6.21  note pseudogene, similar to NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3). (Field mustard), blastp match of 99% identity and 2.0e-226 P-value to SP|Q04050|NU4M_BRACM NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3). (Field mustard) {Brassica campestris}  
At2g07718	chr2:003426263	0.0	W/3426263-3427204	AT2G07718.1  CDS  gene_syn T18C6.22, T18C6_22  go_component membrane|GO:0016020||IEA  go_process respiratory electron transport chain|GO:0022904||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product cytochrome b, putative  note cytochrome b, putative; FUNCTIONS IN: electron carrier activity, oxidoreductase activity; INVOLVED IN: respiratory electron transport chain; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Cytochrome b/b6 (InterPro:IPR016175), Cytochrome b/b6, N-terminal (InterPro:IPR005797); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG00590.1); Has 22999 Blast hits to 22998 proteins in 3944 species: Archae - 0; Bacteria - 28; Metazoa - 21735; Fungi - 0; Plants - 517; Viruses - 0; Other Eukaryotes - 719 (source: NCBI BLink).  protein_id AT2G07718.1p  transcript_id AT2G07718.1  protein_id AT2G07718.1p  transcript_id AT2G07718.1  
At2g07809	chr2:003430672	0.0	W/3430672-3430992	AT2G07809.1  pseudogenic_transcript  pseudo  function Pseudogene of ATMG00600  
At2g07719	chr2:003433010	0.0	C/3433010-3433495	AT2G07719.1  CDS  gene_syn T18C6.24, T18C6_24  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG00610.1); Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07719.1p  transcript_id AT2G07719.1  protein_id AT2G07719.1p  transcript_id AT2G07719.1  
At2g07721	chr2:003434857	0.0	C/3434857-3434994,3434482-3434742	AT2G07721.1  CDS  gene_syn T18C6.23, T18C6_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, hypocotyl, flower, root, carpel; EXPRESSED DURING: petal differentiation and expansion stage; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07721.1p  transcript_id AT2G07721.1  protein_id AT2G07721.1p  transcript_id AT2G07721.1  
At2g07722	chr2:003438742	0.0	W/3438742-3439161	AT2G07722.1  CDS  gene_syn T18C6.30, T18C6_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: pollen tube; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG00620.1); Has 13 Blast hits to 13 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07722.1p  transcript_id AT2G07722.1  protein_id AT2G07722.1p  transcript_id AT2G07722.1  
At2g07723	chr2:003441921	0.0	C/3441921-3444238	AT2G07723.1  pseudogenic_transcript  pseudo  gene_syn T5E7.11  note pseudogene, similar to orf454~homology with two ORFs from Marchantia polymorpha mtDNA (orf169 and orf322), high similarity to 3 -terminal part of ccl1 of Rhodobacter, blastp match of 76% identity and 3.4e-193 P-value to GP|459537|emb|CAA54966.1||X78036 orf454~homology with two ORFs from Marchantia polymorpha mtDNA (orf169 and orf322), high similarity to 3 -terminal part of ccl1 of Rhodobacter {Oenothera berteriana}  
At2g07756	chr2:003444363	0.0	C/3444363-3444434	AT2G07756.1  tRNA  gene_syn 45986.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: GCC)  transcript_id AT2G07756.1  
At2g07815	chr2:003444476	0.0	C/3444476-3444736	AT2G07815.1  CDS  product unknown protein  note unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07815.1p  transcript_id AT2G07815.1  protein_id AT2G07815.1p  transcript_id AT2G07815.1  
At2g07724	chr2:003446394	0.0	C/3446394-3446717	AT2G07724.1  CDS  gene_syn T5E7.10, T5E7_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG00200.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07724.1p  transcript_id AT2G07724.1  protein_id AT2G07724.1p  transcript_id AT2G07724.1  
At2g07725	chr2:003448402	0.0	W/3448402-3448959	AT2G07725.1  CDS  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L5 (RPL5)  note 60S ribosomal protein L5 (RPL5); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein L5 (InterPro:IPR002132); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG00210.1); Has 96 Blast hits to 96 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT2G07725.1p  transcript_id AT2G07725.1  protein_id AT2G07725.1p  transcript_id AT2G07725.1  
At2g07726	chr2:003448961	0.0	W/3448961-3449179	AT2G07726.1  pseudogenic_transcript  pseudo  note pseudogene, similar to Mitochondrial ribosomal protein S14. (Rape), blastp match of 96% identity and 4.1e-29 P-value to SP|P49387|RT14_BRANA Mitochondrial ribosomal protein S14. (Rape) {Brassica napus}  
At2g07727	chr2:003450863	0.0	W/3450863-3452044	AT2G07727.1  CDS  gene_syn T5E7.15, T5E7_15  go_component membrane|GO:0016020||IEA  go_process respiratory electron transport chain|GO:0022904||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component membrane|GO:0016020||ISS  go_function oxidoreductase activity|GO:0016491||ISS  product cytochrome b (MTCYB) (COB) (CYTB)  note cytochrome b (MTCYB) (COB) (CYTB); FUNCTIONS IN: electron carrier activity, oxidoreductase activity; INVOLVED IN: respiratory electron transport chain; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Cytochrome b/b6 (InterPro:IPR016175), Cytochrome b/b6, C-terminal (InterPro:IPR005798), Di-haem cytochrome, transmembrane (InterPro:IPR016174), Cytochrome b/b6, N-terminal (InterPro:IPR005797); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG00220.1); Has 135005 Blast hits to 134822 proteins in 27099 species: Archae - 77; Bacteria - 1750; Metazoa - 124663; Fungi - 1224; Plants - 1334; Viruses - 0; Other Eukaryotes - 5957 (source: NCBI BLink).  protein_id AT2G07727.1p  transcript_id AT2G07727.1  protein_id AT2G07727.1p  transcript_id AT2G07727.1  
At2g07757	chr2:003452977	0.0	W/3452977-3453063	AT2G07757.1  tRNA  gene_syn 45986.TRNA-SER-3  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: GGA)  transcript_id AT2G07757.1  
At2g07728	chr2:003453686	0.0	W/3453686-3453808,3454111-3454241,3454469-3454517,3454597-3454830,3455153-3455234,3455705-3455797,3455880-3455954,3456054-3456127	AT2G07728.1  CDS  gene_syn T5E7.16, T5E7_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07728.1p  transcript_id AT2G07728.1  protein_id AT2G07728.1p  transcript_id AT2G07728.1  
At2g07820	chr2:003457213	0.0	C/3457213-3457479	AT2G07820.1  CDS  product unknown protein  note unknown protein; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07820.1p  transcript_id AT2G07820.1  protein_id AT2G07820.1p  transcript_id AT2G07820.1  
At2g07729	chr2:003459265	0.0	C/3459265-3460129	AT2G07729.1  mRNA_TE_gene  pseudo  gene_syn T5E7.9  note Transposable element gene, copia-like retrotransposon family, has a 2.4e-67 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea)  
At2g07807	chr2:003461922	0.0	W/3461922-3462035	AT2G07807.1  pseudogenic_transcript  pseudo  function Pseudogene of ATMG01060  
At2g07758	chr2:003462078	0.0	W/3462078-3462151	AT2G07758.1  tRNA  gene_syn 45986.TRNA-MET-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Met (anticodon: CAT)  transcript_id AT2G07758.1  
At2g07799	chr2:003466756	0.0	W/3466756-3467061	AT2G07799.1  pseudogenic_transcript  pseudo  function Pseudogene of ATMG00260  
At2g07731	chr2:003467199	0.0	C/3467199-3468078	AT2G07731.1  pseudogenic_transcript  pseudo  gene_syn T5E7.8  note pseudogene, similar to NADH-ubiquinone oxidoreductase chain 6 (EC 1.6.5.3). (Field mustard), blastp match of 96% identity and 3.7e-99 P-value to SP|Q01825|NU6M_ARATH NADH-ubiquinone oxidoreductase chain 6 (EC 1.6.5.3). (Field mustard) {Brassica campestris}  
At2g07732	chr2:003468424	0.0	C/3468424-3468774	AT2G07732.1  CDS  go_process carbon utilization by fixation of carbon dioxide|GO:0015977||IEA  go_function ribulose-bisphosphate carboxylase activity|GO:0016984||IEA  go_component cellular_component|GO:0005575||ND  product ribulose-bisphosphate carboxylase  note ribulose-bisphosphate carboxylase; FUNCTIONS IN: ribulose-bisphosphate carboxylase activity; INVOLVED IN: carbon utilization by fixation of carbon dioxide; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, large subunit, C-terminal (InterPro:IPR000685); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG00280.1).  protein_id AT2G07732.1p  transcript_id AT2G07732.1  protein_id AT2G07732.1p  transcript_id AT2G07732.1  
At2g07733	chr2:003470315	0.0	C/3470315-3471873	AT2G07733.1  pseudogenic_transcript  pseudo  note pseudogene, similar to NADH dehydrogenase subunit 2, blastp match of 94% identity and 2.0e-77 P-value to GP|1667390|gb|AAB18755.1||M81726 NADH dehydrogenase subunit 2 {Oenothera berteriana}  
At2g07734	chr2:003472604	0.0	C/3472604-3473692	AT2G07734.1  CDS  gene_syn T5E7.5, T5E7_5  go_function RNA binding|GO:0003723||IEA  go_component small ribosomal subunit|GO:0015935||ISS  go_process translation|GO:0006412||ISS  go_function RNA binding|GO:0003723||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein S4 (RPS4)  note ribosomal protein S4 (RPS4); FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation; LOCATED IN: small ribosomal subunit; CONTAINS InterPro DOMAIN/s: RNA-binding S4 (InterPro:IPR002942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG00290.1); Has 1397 Blast hits to 1397 proteins in 599 species: Archae - 0; Bacteria - 367; Metazoa - 0; Fungi - 0; Plants - 684; Viruses - 0; Other Eukaryotes - 346 (source: NCBI BLink).  protein_id AT2G07734.1p  transcript_id AT2G07734.1  protein_id AT2G07734.1p  transcript_id AT2G07734.1  
At2g07825	chr2:003474401	0.0	C/3474401-3474598	AT2G07825.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G07825.1p  transcript_id AT2G07825.1  protein_id AT2G07825.1p  transcript_id AT2G07825.1  
At2g07827	chr2:003474996	0.0	W/3474996-3474999,3475076-3475114,3475856-3475899,3476047-3476183,3476259-3476350,3476472-3476522,3476679-3476845	AT2G07827.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT2G07827.1p  transcript_id AT2G07827.1  protein_id AT2G07827.1p  transcript_id AT2G07827.1  
At2g07827	chr2:003474996	0.0	W/3474996-3474999,3475076-3475114,3475856-3475899,3476047-3476187,3476283-3476342,3476594-3476845	AT2G07827.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT2G07827.2p  transcript_id AT2G07827.2  protein_id AT2G07827.2p  transcript_id AT2G07827.2  
At2g07830	chr2:003476156	0.0	C/3476156-3476278	AT2G07830.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G07830.1p  transcript_id AT2G07830.1  protein_id AT2G07830.1p  transcript_id AT2G07830.1  
At2g07787	chr2:003478015	0.0	W/3478015-3478332	AT2G07787.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G07787.1p  transcript_id AT2G07787.1  protein_id AT2G07787.1p  transcript_id AT2G07787.1  
At2g07735	chr2:003479612	0.0	C/3479612-3480000	AT2G07735.1  mRNA_TE_gene  pseudo  gene_syn T5E7.19  note Transposable element gene, copia-like retrotransposon family, has a 4.8e-21 P-value blast match to reverse transcriptase (Ty1_Copia-element) (Arabidopsis thaliana)  
At2g07736	chr2:003480151	0.0	C/3480151-3480633	AT2G07736.1  mRNA_TE_gene  pseudo  gene_syn T5E7.4, T5E7_4  note Transposable element gene, copia-like retrotransposon family, has a 4.9e-29 P-value blast match to GB:CAA37924 orf 2 (Ty1_Copia-element) (Arabidopsis thaliana)  
At2g07737	chr2:003481085	0.0	C/3481085-3482066	AT2G07737.1  mRNA_TE_gene  pseudo  gene_syn T5E7.18  note Transposable element gene, pseudogene, similar to putative reverse transcriptase, blastp match of 43% identity and 2.8e-43 P-value to GP|13786450|gb|AAK39575.1|AC025296_10|AC025296 putative reverse transcriptase {Oryza sativa}  
At2g07775	chr2:003483318	0.0	W/3483318-3483407,3483687-3483857,3483937-3484062	AT2G07775.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G07775.1p  transcript_id AT2G07775.1  protein_id AT2G07775.1p  transcript_id AT2G07775.1  
At2g07806	chr2:003484830	0.0	W/3484830-3484882,3485437-3485470,3485645-3485683,3485778-3485832,3486315-3486505,3486752-3486828,3488107-3488209,3489332-3489421	AT2G07806.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT2G07806.2p  transcript_id AT2G07806.2  protein_id AT2G07806.2p  transcript_id AT2G07806.2  
At2g07806	chr2:003484830	0.0	W/3484830-3484882,3485437-3485506,3485778-3485832,3486315-3486505,3486752-3486828,3488107-3488209,3489332-3489421	AT2G07806.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT2G07806.1p  transcript_id AT2G07806.1  protein_id AT2G07806.1p  transcript_id AT2G07806.1  
At2g07738	chr2:003492434	0.0	C/3492434-3492700	AT2G07738.1  CDS  gene_syn T5E7.3, T5E7_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07738.1p  transcript_id AT2G07738.1  protein_id AT2G07738.1p  transcript_id AT2G07738.1  
At2g07795	chr2:003493292	0.0	W/3493292-3493621	AT2G07795.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07795.1p  transcript_id AT2G07795.1  protein_id AT2G07795.1p  transcript_id AT2G07795.1  
At2g07759	chr2:003494382	0.0	W/3494382-3494419	AT2G07759.1  tRNA  gene_syn 45986.TRNA-SER-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: GCT)  transcript_id AT2G07759.1  
At2g07761	chr2:003494776	0.0	W/3494776-3494850	AT2G07761.1  tRNA  gene_syn 45986.TRNA-TYR-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT2G07761.1  
At2g07762	chr2:003495012	0.0	W/3495012-3495086	AT2G07762.1  tRNA  gene_syn 45986.TRNA-PRO-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT2G07762.1  
At2g07763	chr2:003495442	0.0	W/3495442-3495512	AT2G07763.1  tRNA  gene_syn 45986.TRNA-CYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Cys (anticodon: GCA)  transcript_id AT2G07763.1  
At2g07739	chr2:003495511	0.0	C/3495511-3496110	AT2G07739.1  CDS  gene_syn T5E7.2, T5E7_2  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Ycf1 (InterPro:IPR008896); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG00370.1); Has 357 Blast hits to 357 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 357; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07739.1p  transcript_id AT2G07739.1  protein_id AT2G07739.1p  transcript_id AT2G07739.1  
At2g07764	chr2:003496440	0.0	W/3496440-3496511	AT2G07764.1  tRNA  gene_syn 45986.TRNA-ASN-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asn (anticodon: GTT)  transcript_id AT2G07764.1  
At2g07765	chr2:003497358	0.0	W/3497358-3497440	AT2G07765.1  tRNA  gene_syn 45986.TRNA-TYR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT2G07765.1  
At2g07835	chr2:003501814	0.0	C/3501814-3501972	AT2G07835.1  CDS  product unknown protein  note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG00400.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G07835.1p  transcript_id AT2G07835.1  protein_id AT2G07835.1p  transcript_id AT2G07835.1  
At2g07741	chr2:003502319	0.0	W/3502319-3503476	AT2G07741.1  CDS  gene_syn T5E7.17, T5E7_17  go_component proton-transporting ATP synthase complex, coupling factor F(o)|GO:0045263||IEA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_function hydrogen ion transmembrane transporter activity|GO:0015078||IEA  go_component membrane|GO:0016020||ISS  go_process proton transport|GO:0015992||ISS  go_function hydrogen ion transporting ATP synthase activity, rotational mechanism|GO:0046933||ISS  product ATPase subunit 6, putative  note ATPase subunit 6, putative; FUNCTIONS IN: hydrogen ion transmembrane transporter activity, hydrogen ion transporting ATP synthase activity, rotational mechanism; INVOLVED IN: proton transport, ATP synthesis coupled proton transport; LOCATED IN: proton-transporting ATP synthase complex, coupling factor F(o), membrane; CONTAINS InterPro DOMAIN/s: ATPase, F0 complex, subunit A (InterPro:IPR000568); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG00410.1); Has 24398 Blast hits to 24394 proteins in 5692 species: Archae - 5; Bacteria - 2527; Metazoa - 17677; Fungi - 1022; Plants - 635; Viruses - 0; Other Eukaryotes - 2532 (source: NCBI BLink).  protein_id AT2G07741.1p  transcript_id AT2G07741.1  protein_id AT2G07741.1p  transcript_id AT2G07741.1  
At2g07766	chr2:003503522	0.0	W/3503522-3503608	AT2G07766.1  tRNA  gene_syn 45986.TRNA-SER-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: TGA)  transcript_id AT2G07766.1  
At2g07666	chr2:003506000	0.0	W/3506000-3506320	AT2G07666.1  pseudogenic_transcript  pseudo  function Pseudogene of AT2G07701  
At2g07670	chr2:003506865	0.0	W/3506865-3507323	AT2G07670.1  pseudogenic_transcript  pseudo  function Pseudogene of AT2G07702  
At2g07680	chr2:003515637	0.0	W/3515637-3515704,3515784-3515832,3515908-3516159,3516230-3516285,3516547-3516634,3516925-3517043,3517141-3517238,3517487-3517553,3517641-3517758,3517840-3517956,3518038-3518118,3518200-3518418,3518511-3518612,3518689-3518756,3518842-3518973,3519060-3519207,3519292-3519554,3519633-3519789,3519875-3520050,3520129-3520240,3520329-3520382,3520482-3520604,3520689-3520787,3520931-3521023,3521093-3521203,3521452-3521613,3521787-3521974,3522056-3522491	AT2G07680.1  CDS  gene_syn ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 11, ATMRP11  gene ATMRP11  function member of MRP subfamily  go_component plasma membrane|GO:0005886|17151019|IDA  go_process transport|GO:0006810||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|11346655|ISS  product ATMRP11; ATPase, coupled to transmembrane movement of substances  note ATMRP11; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATMRP2 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 2); ATPase, coupled to transmembrane movement of substances (TAIR:AT2G34660.1); Has 329068 Blast hits to 194524 proteins in 2498 species: Archae - 6056; Bacteria - 234296; Metazoa - 10691; Fungi - 4633; Plants - 2773; Viruses - 6; Other Eukaryotes - 70613 (source: NCBI BLink).  protein_id AT2G07680.1p  transcript_id AT2G07680.1  protein_id AT2G07680.1p  transcript_id AT2G07680.1  
At2g07690	chr2:003527119	0.0	C/3527119-3527388,3526907-3527050,3526650-3526829,3526472-3526570,3526264-3526400,3526059-3526164,3525630-3525764,3525465-3525542,3525154-3525258,3524971-3525062,3524753-3524885,3524554-3524649,3524313-3524404,3524132-3524222,3523940-3524049,3523726-3523855,3523545-3523646,3523379-3523462	AT2G07690.1  CDS  go_component nucleus|GO:0005634||IEA  go_process DNA replication|GO:0006260||IEA  go_process DNA replication initiation|GO:0006270||IEA  go_function DNA binding|GO:0003677||IEA  go_function ATP binding|GO:0005524||IEA  go_process DNA replication initiation|GO:0006270||ISS  go_function DNA binding|GO:0003677||ISS  go_function ATP binding|GO:0005524||ISS  go_function DNA-dependent ATPase activity|GO:0008094||ISS  product minichromosome maintenance family protein / MCM family protein  note minichromosome maintenance family protein / MCM family protein; FUNCTIONS IN: DNA-dependent ATPase activity, DNA binding, ATP binding; INVOLVED IN: DNA replication, DNA replication initiation; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 5 (InterPro:IPR008048); BEST Arabidopsis thaliana protein match is: DNA replication licensing factor, putative (TAIR:AT2G16440.1); Has 2836 Blast hits to 2760 proteins in 318 species: Archae - 235; Bacteria - 77; Metazoa - 955; Fungi - 559; Plants - 251; Viruses - 3; Other Eukaryotes - 756 (source: NCBI BLink).  protein_id AT2G07690.1p  transcript_id AT2G07690.1  protein_id AT2G07690.1p  transcript_id AT2G07690.1  
At2g07700	chr2:003536601	0.0	W/3536601-3537580	AT2G07700.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 4.7e-21 P-value blast match to GB:226407 retrotransposon del1-46 (Gypsy_Ty3-element) (Lilium henryi)  
At2g07788	chr2:003543196	0.0	W/3543196-3545673	AT2G07788.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 6.5e-221 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g07789	chr2:003548050	0.0	C/3548050-3550854	AT2G07789.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 0. P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g07790	chr2:003552887	0.0	C/3552887-3554494	AT2G07790.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 6.6e-74 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At2g07710	chr2:003554680	0.0	W/3554680-3555132	AT2G07710.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32410.2)  
At2g07720	chr2:003557475	0.0	W/3557475-3558188	AT2G07720.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.1e-59 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g07791	chr2:003559149	0.0	C/3559149-3561620	AT2G07791.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g07730	chr2:003566140	0.0	C/3566140-3569597	AT2G07730.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 5.0e-32 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At2g07740	chr2:003570261	0.0	C/3570261-3571573	AT2G07740.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to nucleic acid binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G01050.1); similar to Zinc finger, CCHC-type; Endonuclease/exonuclease/phosphatase [Medicago truncatula] (GB:ABE79649.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677)  
At2g07750	chr2:003576483	0.0	W/3576483-3576648,3577286-3578246,3578322-3578428,3578501-3578556,3578638-3578865,3578959-3579165,3579258-3579344,3579424-3579519,3579601-3579816,3579903-3580085,3580166-3580396	AT2G07750.1  CDS  gene_syn T12J2.7, T12J2_7  go_component chloroplast|GO:0009507||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD box RNA helicase, putative  note DEAD box RNA helicase, putative; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase, putative (TAIR:AT1G63250.1); Has 25570 Blast hits to 25115 proteins in 1668 species: Archae - 328; Bacteria - 10211; Metazoa - 4763; Fungi - 3232; Plants - 1366; Viruses - 8; Other Eukaryotes - 5662 (source: NCBI BLink).  protein_id AT2G07750.1p  transcript_id AT2G07750.1  protein_id AT2G07750.1p  transcript_id AT2G07750.1  
At2g07760	chr2:003585652	0.0	C/3585652-3586278,3584735-3585432,3584420-3584687	AT2G07760.1  CDS  gene_syn T12J2.8, T12J2_8  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc knuckle (CCHC-type) family protein  note zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28823.1); Has 55 Blast hits to 53 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 6; Plants - 37; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT2G07760.1p  transcript_id AT2G07760.1  protein_id AT2G07760.1p  transcript_id AT2G07760.1  
At2g07770	chr2:003586863	0.0	W/3586863-3588942	AT2G07770.1  mRNA_TE_gene  pseudo  gene_syn T12J2.9, T12J2_9  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15600.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G43530.1); similar to hypothetical protein B14911_03489 [Bacillus sp. NRRL B-14911] (GB:ZP_01168655.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048)  
At2g07780	chr2:003590814	0.0	C/3590814-3593227	AT2G07780.1  mRNA_TE_gene  pseudo  gene_syn T12J2.10  note Transposable element gene, Mutator-like transposase family, has a 1.5e-32 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At2g07880	chr2:003604528	0.0	W/3604528-3605049	AT2G07880.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G11090.1)  
At2g07981	chr2:003614986	0.0	W/3614986-3615034,3615144-3615212,3615322-3615390,3615499-3615558,3615668-3615736,3615846-3615914,3615970-3616092,3616202-3616270,3616380-3616484,3616558-3616626,3616682-3616804,3616914-3616982,3617092-3617160,3617270-3617338,3617447-3617515,3617625-3617716	AT2G07981.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G08986.1); Has 148 Blast hits to 69 proteins in 23 species: Archae - 0; Bacteria - 9; Metazoa - 48; Fungi - 8; Plants - 26; Viruses - 3; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT2G07981.1p  transcript_id AT2G07981.1  protein_id AT2G07981.1p  transcript_id AT2G07981.1  
At2g08986	chr2:003618058	0.0	W/3618058-3618102,3618216-3618279,3618393-3618461,3618689-3618817,3618872-3618991,3619105-3619159,3619461-3619529,3619613-3619704,3619818-3619886,3619942-3620064,3620170-3620238,3620348-3620416,3620525-3620593,3620649-3620771,3620881-3620949,3621059-3621127,3621237-3621305,3621411-3621482,3621538-3621660,3621770-3621838,3621894-3622016,3622099-3622194,3622301-3622372,3622482-3622550,3622659-3622727,3622837-3622905,3623015-3623083,3623193-3623261,3623371-3623439,3623549-3623617,3623727-3623795,3623904-3623972,3624082-3624150,3624260-3624328,3624446-3624502,3624558-3624680,3624790-3624858,3624968-3625036,3625154-3625210,3625266-3625388,3625498-3625566,3625676-3625744,3625853-3625921,3625977-3626099,3626209-3626277,3626387-3626460	AT2G08986.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G40104.1); Has 914 Blast hits to 447 proteins in 89 species: Archae - 0; Bacteria - 92; Metazoa - 283; Fungi - 16; Plants - 91; Viruses - 11; Other Eukaryotes - 421 (source: NCBI BLink).  protein_id AT2G08986.1p  transcript_id AT2G08986.1  protein_id AT2G08986.1p  transcript_id AT2G08986.1  
At2g09187	chr2:003639603	0.0	C/3639603-3646073	AT2G09187.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.3e-226 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g09388	chr2:003651156	0.0	W/3651156-3651299,3651821-3651934,3652032-3652235	AT2G09388.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G09388.1p  transcript_id AT2G09388.1  protein_id AT2G09388.1p  transcript_id AT2G09388.1  
At2g09589	chr2:003654411	0.0	C/3654411-3656876	AT2G09589.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.2e-32 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g09790	chr2:003658229	0.0	W/3658229-3659011	AT2G09790.1  mRNA_TE_gene  pseudo  gene_syn T14C8.1  note Transposable element gene, gypsy-like retrotransposon family, has a 2.3e-20 P-value blast match to F6H8 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)  
At2g09800	chr2:003667253	0.0	W/3667253-3672394	AT2G09800.1  mRNA_TE_gene  pseudo  gene_syn T14C8.2  note Transposable element gene, copia-like retrotransposon family, has a 1.8e-162 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)  
At2g09795	chr2:003670909	0.0	C/3670909-3672712	AT2G09795.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G09800  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G09795.1  
At2g09795	chr2:003671865	0.0	C/3671865-3672729	AT2G09795.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G09800  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G09795.2  
At2g09795	chr2:003671960	0.0	C/3671960-3672681	AT2G09795.3  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G09800  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G09795.3  
At2g09810	chr2:003675909	0.0	C/3675909-3676326	AT2G09810.1  mRNA_TE_gene  pseudo  gene_syn T14C8.3  note Transposable element gene, pseudogene, similar to putative helicase, blastp match of 50% identity and 1.2e-22 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)}  
At2g09820	chr2:003681189	0.0	C/3681189-3685396	AT2G09820.1  mRNA_TE_gene  pseudo  gene_syn T14C8.4  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.6e-138 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g09830	chr2:003687672	0.0	C/3687672-3691747	AT2G09830.1  mRNA_TE_gene  pseudo  gene_syn T14C8.5  note Transposable element gene, copia-like retrotransposon family, has a 6.3e-295 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At2g09838	chr2:003703304	0.0	C/3703304-3703492	AT2G09838.1  CDS  go_component mitochondrion|GO:0005739||IEA  product unknown protein  note unknown protein; LOCATED IN: mitochondrion; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G09838.1p  transcript_id AT2G09838.1  protein_id AT2G09838.1p  transcript_id AT2G09838.1  
At2g09840	chr2:003704959	0.0	C/3704959-3705450	AT2G09840.1  CDS  gene_syn T14C8.6, T14C8_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: nucleic acid binding / zinc ion binding (TAIR:AT2G06904.1); Has 10 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G09840.1p  transcript_id AT2G09840.1  protein_id AT2G09840.1p  transcript_id AT2G09840.1  
At2g09850	chr2:003707758	0.0	W/3707758-3710964	AT2G09850.1  mRNA_TE_gene  pseudo  gene_syn T14C8.7  note Transposable element gene, gypsy-like retrotransposon family, has a 4.4e-23 P-value blast match to aF19N02 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)  
At2g09860	chr2:003722449	0.0	C/3722449-3726114	AT2G09860.1  mRNA_TE_gene  pseudo  gene_syn T14C8.8  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 6.1e-47 P-value blast match to GB:BAA20419 reverse transcriptase (LINE-element) (Mus musculus)  
At2g09862	chr2:003727288	0.0	W/3727288-3727797	AT2G09862.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 1.8e-13 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At2g09865	chr2:003729543	0.0	C/3729543-3731042	AT2G09865.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G38380.1)  
At2g09870	chr2:003733172	0.0	W/3733172-3738079	AT2G09870.1  mRNA_TE_gene  pseudo  gene_syn T14C8.9, T14C8_9  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 5.6e-224 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g09880	chr2:003739143	0.0	W/3739143-3739647	AT2G09880.1  mRNA_TE_gene  pseudo  gene_syn T14C8.10, T14C8_10  note Transposable element gene, pseudogene, hypothetical protein, similar to hypothetical protein GB:AAC97247  
At2g09890	chr2:003742434	0.0	C/3742434-3746263	AT2G09890.1  mRNA_TE_gene  pseudo  gene_syn F7B19.3  note Transposable element gene, pseudogene, similar to putative helicase, PIF1 family of mitochondrial helicases; blastp match of 41% identity and 4.2e-193 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)}  
At2g09900	chr2:003751342	0.0	C/3751342-3751937	AT2G09900.1  mRNA_TE_gene  pseudo  gene_syn F7B19.4, F7B19_4  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G40115.1)  
At2g09910	chr2:003753396	0.0	W/3753396-3757208	AT2G09910.1  mRNA_TE_gene  pseudo  gene_syn F7B19.5, F7B19_5  note Transposable element gene, similar to ASY2, DNA binding [Arabidopsis thaliana] (TAIR:AT4G32200.1); similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT4G20730.1); similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT3G10100.1); similar to hypothetical protein 27.t00126 [Brassica oleracea] (GB:ABD65062.1); contains domain (Phosphotyrosine protein) phosphatases II (SSF52799)  
At2g09920	chr2:003758116	0.0	C/3758116-3762630	AT2G09920.1  mRNA_TE_gene  pseudo  gene_syn F7B19.6  note Transposable element gene, gypsy-like retrotransposon family, has a 1.5e-132 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At2g09930	chr2:003764537	0.0	C/3764537-3766233	AT2G09930.1  mRNA_TE_gene  pseudo  gene_syn F7B19.7  note Transposable element gene, pseudogene, hypothetical protein  
At2g09950	chr2:003767390	0.0	C/3767390-3771433	AT2G09950.1  mRNA_TE_gene  pseudo  gene_syn F7B19.9  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.0e-132 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g09953	chr2:003772665	0.0	C/3772665-3773282	AT2G09953.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g09956	chr2:003773824	0.0	C/3773824-3775059	AT2G09956.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g09960	chr2:003775766	0.0	C/3775766-3778960	AT2G09960.1  mRNA_TE_gene  pseudo  gene_syn F7B19.10, F7B19_10  function pseudogene of unknown protein  note Transposable element gene, expressed protein, includes At2g05890, At4g07450, At3g30630, At3g43100, At2g09960, At3g30550, At1g39430, At2g10460, At4g03640, At5g35250  
At2g09970	chr2:003780172	0.0	C/3780172-3780672	AT2G09970.1  CDS  gene_syn F7B19.11, F7B19_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1677, plant (InterPro:IPR012876); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72510.2); Has 129 Blast hits to 128 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G09970.1p  transcript_id AT2G09970.1  protein_id AT2G09970.1p  transcript_id AT2G09970.1  
At2g09990	chr2:003781442	0.0	W/3781442-3781882	AT2G09990.1  CDS  gene_syn F7B19.13, F7B19_13  go_component cell wall|GO:0005618|16287169|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S16 (RPS16A)  note 40S ribosomal protein S16 (RPS16A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, chloroplast, membrane; EXPRESSED IN: guard cell, callus, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Ribosomal protein S9 (InterPro:IPR000754), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S16 (RPS16C) (TAIR:AT5G18380.1); Has 4968 Blast hits to 4968 proteins in 1538 species: Archae - 152; Bacteria - 2664; Metazoa - 274; Fungi - 125; Plants - 112; Viruses - 0; Other Eukaryotes - 1641 (source: NCBI BLink).  protein_id AT2G09990.1p  transcript_id AT2G09990.1  protein_id AT2G09990.1p  transcript_id AT2G09990.1  
At2g09992	chr2:003782609	0.0	W/3782609-3782840	AT2G09992.1  pseudogenic_transcript  pseudo  function pseudogene of disease-resistance protein  
At2g09994	chr2:003782956	0.0	W/3782956-3784075	AT2G09994.1  pseudogenic_transcript  pseudo  function pseudogene of U-box domain-containing protein / armadillo/beta-catenin repeat family protein  
At2g10000	chr2:003786133	0.0	C/3786133-3788854	AT2G10000.1  mRNA_TE_gene  pseudo  gene_syn F7B19.14, F7B19_14  note Transposable element gene, CACTA-like transposase family (Tnp1/En/Spm), has a 3.1e-154 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)  
At2g10010	chr2:003789439	0.0	C/3789439-3792943	AT2G10010.1  mRNA_TE_gene  pseudo  gene_syn F7B19.15, F7B19_15  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 0. P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At2g10014	chr2:003794972	0.0	C/3794972-3795145	AT2G10014.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G10014.1p  transcript_id AT2G10014.1  protein_id AT2G10014.1p  transcript_id AT2G10014.1  
At2g10020	chr2:003797230	0.0	W/3797230-3797430	AT2G10020.1  CDS  gene_syn F7B19.16, F7B19_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G10020.1p  transcript_id AT2G10020.1  protein_id AT2G10020.1p  transcript_id AT2G10020.1  
At2g10030	chr2:003804570	0.0	C/3804570-3807981	AT2G10030.1  mRNA_TE_gene  pseudo  gene_syn F7B19.17  note Transposable element gene, CACTA-like transposase family (Tnp1/En/Spm), has a 3.2e-53 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)  
At2g10040	chr2:003809308	0.0	C/3809308-3811943	AT2G10040.1  mRNA_TE_gene  pseudo  gene_syn F7B19.18  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 9.4e-143 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays)  
At2g10050	chr2:003813289	0.0	C/3813289-3813651	AT2G10050.1  mRNA_TE_gene  pseudo  gene_syn F7B19.19, F7B19_19  note Transposable element gene, similar to pol polyprotein-like [Solanum tuberosum] (GB:AAU89775.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878)  
At2g10070	chr2:003817780	0.0	C/3817780-3819701	AT2G10070.2  mRNA_TE_gene  pseudo  gene_syn F7B19.21, F7B19_21  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G40125.1)  
At2g10070	chr2:003818671	0.0	C/3818671-3819701	AT2G10070.1  mRNA_TE_gene  pseudo  gene_syn F7B19.21, F7B19_21  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G40125.1)  transcript_id AT2G10070.1  
At2g10080	chr2:003820974	0.0	C/3820974-3822999	AT2G10080.1  mRNA_TE_gene  pseudo  gene_syn F7B19.22  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.2e-58 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g10090	chr2:003823530	0.0	C/3823530-3823889	AT2G10090.1  mRNA_TE_gene  pseudo  gene_syn F7B19.23, F7B19_23  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G04460.1); similar to pol polyprotein [Citrus x paradisi] (GB:AAK70407.1)  
At2g10100	chr2:003826191	0.0	W/3826191-3828196	AT2G10100.1  mRNA_TE_gene  pseudo  gene_syn F7B19.24  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.6e-114 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g10105	chr2:003828199	0.0	W/3828199-3828646	AT2G10105.1  mRNA_TE_gene  pseudo  note Transposable element gene, contains domain ATHILA RETROELEMENT ORF1 PROTEIN (PTHR10178:SF9); contains domain GAG/POL/ENV POLYPROTEIN (PTHR10178)  
At2g10110	chr2:003830551	0.0	W/3830551-3831060	AT2G10110.1  mRNA_TE_gene  pseudo  gene_syn F7B19.25, F7B19_25  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G06914.1); similar to microfilarial sheath protein SHP3 precursor [Bru (GB:AAB86941.1)  
At2g10120	chr2:003834912	0.0	C/3834912-3835855	AT2G10120.1  mRNA_TE_gene  pseudo  gene_syn F7B19.26  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.4e-18 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g10130	chr2:003836126	0.0	C/3836126-3837892	AT2G10130.1  mRNA_TE_gene  pseudo  gene_syn F7B19.27  note Transposable element gene, pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 35% identity and 4.0e-70 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}  
At2g10140	chr2:003838422	0.0	W/3838422-3840953	AT2G10140.1  mRNA_TE_gene  pseudo  gene_syn F7B19.28, F7B19_28  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 1.7e-140 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At2g10150	chr2:003842808	0.0	C/3842808-3844396	AT2G10150.1  mRNA_TE_gene  pseudo  gene_syn F7B19.29  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.6e-16 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)  
At2g10160	chr2:003849328	0.0	C/3849328-3852601	AT2G10160.1  mRNA_TE_gene  pseudo  gene_syn T15D9.1  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.5e-105 P-value blast match to gb|AAL06419.1|AF378075_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At2g10165	chr2:003854086	0.0	C/3854086-3854814	AT2G10165.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.7e-22 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g10170	chr2:003858670	0.0	C/3858670-3861660	AT2G10170.1  mRNA_TE_gene  pseudo  gene_syn T15D9.2  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.2e-278 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g10175	chr2:003862892	0.0	C/3862892-3863553	AT2G10175.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30650.1)  
At2g10180	chr2:003866573	0.0	C/3866573-3872675	AT2G10180.1  mRNA_TE_gene  pseudo  gene_syn T15D9.3  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.2e-294 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g10190	chr2:003875425	0.0	C/3875425-3881998	AT2G10190.1  mRNA_TE_gene  pseudo  gene_syn T15D9.4  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.9e-120 P-value blast match to gb|AAL06422.1|AF378081_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At2g10200	chr2:003884130	0.0	C/3884130-3886618	AT2G10200.1  mRNA_TE_gene  pseudo  gene_syn T15D9.5  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.6e-218 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g10205	chr2:003888546	0.0	W/3888546-3890441	AT2G10205.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 7.4e-36 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At2g10210	chr2:003890744	0.0	C/3890744-3894739	AT2G10210.1  mRNA_TE_gene  pseudo  gene_syn T15D9.6  note Transposable element gene, gypsy-like retrotransposon family, has a 2.0e-209 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At2g10220	chr2:003898010	0.0	W/3898010-3900223	AT2G10220.1  mRNA_TE_gene  pseudo  gene_syn T15D9.7  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.3e-151 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g10223	chr2:003900488	0.0	C/3900488-3900973	AT2G10223.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g10226	chr2:003902798	0.0	W/3902798-3903640	AT2G10226.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to putative reverse transcriptase., blastp match of 28% identity and 1.0e-07 P-value to GP|21450442|gb|AAM54146.1|AC104616_5|AC104616 putative reverse transcriptase. {Oryza sativa (japonica cultivar-group)}  
At2g10230	chr2:003904098	0.0	W/3904098-3906674	AT2G10230.1  mRNA_TE_gene  pseudo  gene_syn T15D9.8  note Transposable element gene, pseudogene, replication protein A1  
At2g10232	chr2:003908589	0.0	W/3908589-3909740	AT2G10232.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g10234	chr2:003910473	0.0	W/3910473-3911711	AT2G10234.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g10237	chr2:003912438	0.0	W/3912438-3913631	AT2G10237.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g10240	chr2:003914735	0.0	W/3914735-3919618	AT2G10240.1  mRNA_TE_gene  pseudo  gene_syn T15D9.9  note Transposable element gene, pseudogene, similar to putative helicase, PIF1 family of mitochondrial helicases; blastp match of 38% identity and 1.0e-142 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)}  
At2g10250	chr2:003920936	0.0	W/3920936-3925848	AT2G10250.1  mRNA_TE_gene  pseudo  gene_syn T15D9.10  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.0e-157 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g10253	chr2:003927980	0.0	W/3927980-3928813	AT2G10253.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g10256	chr2:003933386	0.0	C/3933386-3935395	AT2G10256.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 9.0e-27 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At2g10260	chr2:003938527	0.0	W/3938527-3938946,3939116-3939367,3939440-3939610,3939779-3940195,3940658-3940782,3940872-3941038,3941149-3941240	AT2G10260.1  CDS  gene_syn T15D9.11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1985 (InterPro:IPR015410); BEST Arabidopsis thaliana protein match is: Ulp1 protease family protein (TAIR:AT5G45570.1).  protein_id AT2G10260.1p  transcript_id AT2G10260.1  protein_id AT2G10260.1p  transcript_id AT2G10260.1  
At2g10260	chr2:003938527	0.0	W/3938527-3938946,3939116-3939367,3939440-3939610,3939779-3940199,3940277-3940367,3940453-3940488,3940966-3940995,3941090-3941240	AT2G10260.2  CDS  gene_syn T15D9.11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1985 (InterPro:IPR015410); BEST Arabidopsis thaliana protein match is: Ulp1 protease family protein (TAIR:AT5G45570.1).  protein_id AT2G10260.2p  transcript_id AT2G10260.2  protein_id AT2G10260.2p  transcript_id AT2G10260.2  
At2g10265	chr2:003941889	0.0	C/3941889-3942758	AT2G10265.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 0.00012 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At2g10270	chr2:003943496	0.0	W/3943496-3944667	AT2G10270.1  mRNA_TE_gene  pseudo  gene_syn T15D9.12  note Transposable element gene, pseudogene, hypothetical protein  
At2g10280	chr2:003945969	0.0	W/3945969-3953199	AT2G10280.1  mRNA_TE_gene  pseudo  gene_syn F7K9.4  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 5.3e-53 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g10285	chr2:003954998	0.0	W/3954998-3955674	AT2G10285.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G31838.1)  
At2g10290	chr2:003956425	0.0	W/3956425-3957216	AT2G10290.1  mRNA_TE_gene  pseudo  gene_syn F7K9.3  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.3e-05 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g10300	chr2:003959414	0.0	W/3959414-3962068	AT2G10300.1  mRNA_TE_gene  pseudo  gene_syn F7K9.2  note Transposable element gene, pseudogene, hypothetical protein  
At2g10310	chr2:003967933	0.0	C/3967933-3971356	AT2G10310.1  mRNA_TE_gene  pseudo  gene_syn F7K9.1  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.1e-31 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g10320	chr2:003973249	0.0	W/3973249-3975866	AT2G10320.1  mRNA_TE_gene  pseudo  gene_syn F12P23.17  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.3e-75 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g10330	chr2:003977961	0.0	C/3977961-3983783	AT2G10330.1  mRNA_TE_gene  pseudo  gene_syn F12P23.16  note Transposable element gene, gypsy-like retrotransposon family, has a 5.7e-176 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At2g10340	chr2:003984031	0.0	C/3984031-3984288	AT2G10340.1  CDS  gene_syn F12P23.15, F12P23_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G10340.1p  transcript_id AT2G10340.1  protein_id AT2G10340.1p  transcript_id AT2G10340.1  
At2g10350	chr2:003988685	0.0	W/3988685-3993908	AT2G10350.1  mRNA_TE_gene  pseudo  gene_syn F12P23.14, F12P23_14  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G03970.1); similar to Ulp1 protease family [Arabidopsis thaliana] (TAIR:AT3G42530.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G44880.1); similar to hypothetical protein 23.t00036 [Brassica oleracea] (GB:ABD65624.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At2g10360	chr2:003995511	0.0	W/3995511-3996002	AT2G10360.1  mRNA_TE_gene  pseudo  gene_syn F12P23.13, F12P23_13  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G44870.1)  
At2g10370	chr2:003996636	0.0	W/3996636-3997650	AT2G10370.1  mRNA_TE_gene  pseudo  gene_syn F12P23.12, F12P23_12  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G44860.1); similar to hypothetical protein 31.t00082 [Brassica oleracea] (GB:ABD65101.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At2g10380	chr2:003998539	0.0	W/3998539-3999488	AT2G10380.1  mRNA_TE_gene  pseudo  gene_syn F12P23.11, F12P23_11  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G36070.1)  
At2g10390	chr2:003999945	0.0	W/3999945-4000621	AT2G10390.1  mRNA_TE_gene  pseudo  gene_syn F12P23.10, F12P23_10  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35100.1)  
At2g10400	chr2:004001686	0.0	C/4001686-4004495	AT2G10400.1  mRNA_TE_gene  pseudo  gene_syn F12P23.9  note Transposable element gene, Mutator-like transposase family, has a 3.7e-61 P-value blast match to Q9S9L6 /322-461 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g10405	chr2:004005579	0.0	W/4005579-4006116	AT2G10405.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 1.3e-19 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays)  
At2g10410	chr2:004005995	0.0	C/4005995-4007044	AT2G10410.1  mRNA_TE_gene  pseudo  gene_syn F12P23.8, SADHU1-1, Sadhu non-coding retrotransposon  gene SADHU1-1  function Member of Sadhu non-coding retrotransposon family  note Transposable element gene  
At2g10420	chr2:004008078	0.0	W/4008078-4008743	AT2G10420.1  mRNA_TE_gene  pseudo  gene_syn F12P23.7  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 1.7e-82 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At2g10430	chr2:004008789	0.0	C/4008789-4011726	AT2G10430.1  pseudogenic_transcript  pseudo  gene_syn F12P23.6  note pseudogene, similar to putative reverse transcriptase, blastp match of 34% identity and 1.6e-24 P-value to GP|27311287|gb|AAO00713.1||AC078894 putative reverse transcriptase {Oryza sativa (japonica cultivar-group)}  
At2g10440	chr2:004017925	0.0	C/4017925-4018046,4017323-4017425,4016901-4017013,4016686-4016810,4016250-4016642,4016113-4016207,4015946-4016020,4014850-4015821,4014448-4014762,4014206-4014370,4014045-4014163,4013752-4013962	AT2G10440.1  CDS  gene_syn F12P23.5, F12P23_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 8198 Blast hits to 4890 proteins in 251 species: Archae - 0; Bacteria - 212; Metazoa - 1756; Fungi - 490; Plants - 212; Viruses - 22; Other Eukaryotes - 5506 (source: NCBI BLink).  protein_id AT2G10440.1p  transcript_id AT2G10440.1  protein_id AT2G10440.1p  transcript_id AT2G10440.1  
At2g10440	chr2:004017925	0.0	C/4017925-4018046,4017561-4017587,4017323-4017425,4017170-4017236,4016901-4017072,4016686-4016810,4016113-4016207,4015946-4016020,4014850-4015821,4014448-4014762,4014206-4014370,4014045-4014133,4013752-4013962	AT2G10440.2  CDS  gene_syn F12P23.5, F12P23_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1).  protein_id AT2G10440.2p  transcript_id AT2G10440.2  protein_id AT2G10440.2p  transcript_id AT2G10440.2  
At2g10450	chr2:004020305	0.0	W/4020305-4020364,4020506-4020598,4020678-4020773	AT2G10450.1  CDS  gene_syn F12P23.4, F12P23_4  go_component plasma membrane|GO:0005886|17151019|IDA  go_function amino acid binding|GO:0016597|10836149|TAS  product 14-3-3 protein, putative / grf15, putative  note 14-3-3 protein, putative / grf15, putative; FUNCTIONS IN: amino acid binding; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: GRF3 (GENERAL REGULATORY FACTOR 3); ATP binding / protein binding / protein phosphorylated amino acid binding (TAIR:AT5G38480.1); Has 1714 Blast hits to 1714 proteins in 264 species: Archae - 0; Bacteria - 0; Metazoa - 895; Fungi - 193; Plants - 468; Viruses - 0; Other Eukaryotes - 158 (source: NCBI BLink).  protein_id AT2G10450.1p  transcript_id AT2G10450.1  protein_id AT2G10450.1p  transcript_id AT2G10450.1  
At2g10460	chr2:004027966	0.0	W/4027966-4030285	AT2G10460.1  mRNA_TE_gene  pseudo  gene_syn F12P23.3, F12P23_3  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07450.1); similar to hypothetical protein 31.t00031 [Brassica oleracea] (GB:ABD65118.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At2g10465	chr2:004031240	0.0	W/4031240-4032488	AT2G10465.1  mRNA_TE_gene  pseudo  gene_syn F12P23.2, F12P23_2  note Transposable element gene, similar to replication protein-related [Arabidopsis thaliana] (TAIR:AT5G35260.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At2g10470	chr2:004033919	0.0	W/4033919-4035011	AT2G10470.1  mRNA_TE_gene  pseudo  gene_syn F12P23.1  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G10836.1)  
At2g10480	chr2:004036277	0.0	W/4036277-4038845	AT2G10480.1  mRNA_TE_gene  pseudo  gene_syn T4D8.11  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 3.1e-143 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays)  
At2g10490	chr2:004041164	0.0	W/4041164-4043622	AT2G10490.1  mRNA_TE_gene  pseudo  gene_syn T4D8.10, T4D8_10  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 2.0e-43 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At2g10500	chr2:004044727	0.0	W/4044727-4045747	AT2G10500.1  mRNA_TE_gene  pseudo  gene_syn T4D8.9, T4D8_9  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07430.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At2g10510	chr2:004051549	0.0	W/4051549-4055823	AT2G10510.1  mRNA_TE_gene  pseudo  gene_syn T4D8.8  note Transposable element gene, copia-like retrotransposon family, has a 2.5e-94 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At2g10520	chr2:004061566	0.0	W/4061566-4064886	AT2G10520.1  mRNA_TE_gene  pseudo  gene_syn T4D8.7  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At2g10530	chr2:004065708	0.0	C/4065708-4067263	AT2G10530.1  mRNA_TE_gene  pseudo  gene_syn T4D8.6  note Transposable element gene, copia-like retrotransposon family, has a 6.9e-42 P-value blast match to GB:BAA11674 ORF(AA 1-1338) (Ty1_Copia-element) (Nicotiana tabacum)  
At2g10535	chr2:004082851	0.0	W/4082851-4082900,4082967-4083168	AT2G10535.1  CDS  gene_syn LCR29, Low-molecular-weight cysteine-rich 29  gene LCR29  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR29 (Low-molecular-weight cysteine-rich 29)  note Low-molecular-weight cysteine-rich 29 (LCR29); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); BEST Arabidopsis thaliana protein match is: LCR13 (Low-molecular-weight cysteine-rich 13) (TAIR:AT4G09795.1); Has 17 Blast hits to 17 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G10535.1p  transcript_id AT2G10535.1  protein_id AT2G10535.1p  transcript_id AT2G10535.1  
At2g10537	chr2:004083603	0.0	C/4083603-4083913	AT2G10537.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G10537.1  
At2g10540	chr2:004091077	0.0	C/4091077-4094102	AT2G10540.1  mRNA_TE_gene  pseudo  gene_syn T4D8.5  note Transposable element gene, gypsy-like retrotransposon family, has a 1.1e-165 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus)  
At2g10550	chr2:004096628	0.0	C/4096628-4096920,4096001-4096220	AT2G10550.1  CDS  gene_syn T4D8.4, T4D8_4  go_component chloroplast|GO:0009507||IEA  product unknown protein  note LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: uracil DNA glycosylase family protein (TAIR:AT3G18630.1); Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G10550.1p  transcript_id AT2G10550.1  protein_id AT2G10550.1p  transcript_id AT2G10550.1  
At2g10555	chr2:004101872	0.0	C/4101872-4102548	AT2G10555.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to replication protein-related [Arabidopsis thaliana] (TAIR:AT5G35260.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At2g10557	chr2:004106183	0.0	C/4106183-4106356	AT2G10557.1  CDS  product unknown protein  note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04853.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G10557.1p  transcript_id AT2G10557.1  protein_id AT2G10557.1p  transcript_id AT2G10557.1  
At2g10560	chr2:004109862	0.0	C/4109862-4110698	AT2G10560.1  CDS  gene_syn T4D8.3, T4D8_3  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04860.1); Has 37 Blast hits to 37 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G10560.1p  transcript_id AT2G10560.1  protein_id AT2G10560.1p  transcript_id AT2G10560.1  
At2g10570	chr2:004111240	0.0	W/4111240-4115041	AT2G10570.1  mRNA_TE_gene  pseudo  gene_syn T4D8.2  note Transposable element gene, copia-like retrotransposon family, has a 3.1e-239 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)  
At2g10589	chr2:004115711	0.0	C/4115711-4115994	AT2G10589.1  pseudogenic_transcript  pseudo  function unknown pseudogene  
At2g10610	chr2:004116392	0.0	W/4116392-4120429	AT2G10610.1  mRNA_TE_gene  pseudo  gene_syn T6A13.14, T6A13_14  note Transposable element gene, copia-like retrotransposon family, has a 2.6e-162 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At2g10590	chr2:004121859	0.0	C/4121859-4124630	AT2G10590.1  mRNA_TE_gene  pseudo  gene_syn T6A13.13  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.4e-257 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g10600	chr2:004127908	0.0	C/4127908-4131031	AT2G10600.1  mRNA_TE_gene  pseudo  gene_syn T6A13.12  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.4e-30 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g10602	chr2:004134895	0.0	W/4134895-4134960,4135026-4135121,4135583-4135888	AT2G10602.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G36756.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G10602.1p  transcript_id AT2G10602.1  protein_id AT2G10602.1p  transcript_id AT2G10602.1  
At2g10605	chr2:004139728	0.0	W/4139728-4140985	AT2G10605.1  mRNA_TE_gene  pseudo  gene_syn T6A13.11  note Transposable element gene, pseudogene, similar to putative reverse transcriptase, blastp match of 27% identity and 2.7e-06 P-value to GP|20279456|gb|AAM18736.1|AC092548_14|AC092548 putative reverse transcriptase {Oryza sativa (japonica cultivar-group)}  
At2g10606	chr2:004142323	0.0	C/4142323-4142473	AT2G10606.1  miRNA  gene_syn MICRORNA396A, MIR396A  gene MIR396A  function Encodes a microRNA that targets several GRF family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUCCACAGCUUUCUUGAACUG  product MIR396A (MICRORNA396A); miRNA  transcript_id AT2G10606.1  
At2g10608	chr2:004145761	0.0	C/4145761-4146168	AT2G10608.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G10608.1p  transcript_id AT2G10608.1  protein_id AT2G10608.1p  transcript_id AT2G10608.1  
At2g10611	chr2:004148724	0.0	W/4148724-4149032	AT2G10611.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 4.3e-12 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At2g10614	chr2:004153465	0.0	W/4153465-4154145	AT2G10614.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g10617	chr2:004154975	0.0	W/4154975-4155602	AT2G10617.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.0e-32 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g10620	chr2:004157220	0.0	W/4157220-4159324	AT2G10620.1  mRNA_TE_gene  pseudo  gene_syn T6A13.10, T6A13_10  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 5.5e-59 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g10630	chr2:004162835	0.0	W/4162835-4165555	AT2G10630.1  mRNA_TE_gene  pseudo  gene_syn T6A13.9, T6A13_9  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 2.7e-97 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota)  
At2g10640	chr2:004166322	0.0	W/4166322-4168741	AT2G10640.1  mRNA_TE_gene  pseudo  gene_syn T6A13.8, T6A13_8  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 7.4e-42 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At2g10650	chr2:004169151	0.0	C/4169151-4172678	AT2G10650.1  mRNA_TE_gene  pseudo  gene_syn T6A13.7, T6A13_7  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.5e-43 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g10660	chr2:004177220	0.0	W/4177220-4182769	AT2G10660.1  mRNA_TE_gene  pseudo  gene_syn T6A13.6, T6A13_6  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.3e-277 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g10670	chr2:004190009	0.0	C/4190009-4192940	AT2G10670.1  mRNA_TE_gene  pseudo  gene_syn T6A13.5, T6A13_5  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.6e-286 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g10680	chr2:004200570	0.0	C/4200570-4202437	AT2G10680.1  mRNA_TE_gene  pseudo  gene_syn T6A13.4  note Transposable element gene, pseudogene, hypothetical protein  
At2g10690	chr2:004204731	0.0	C/4204731-4208510	AT2G10690.1  mRNA_TE_gene  pseudo  gene_syn T6A13.3, T6A13_3  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 9.8e-118 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At2g10740	chr2:004208578	0.0	C/4208578-4209411	AT2G10740.1  mRNA_TE_gene  pseudo  gene_syn T6A13.2, T6A13_2  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.7e-102 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g10710	chr2:004213691	0.0	W/4213691-4214181	AT2G10710.1  mRNA_TE_gene  pseudo  gene_syn T6A13.19  note Transposable element gene, pseudogene, hypothetical protein, similar to MURA transposase of maize Mutator transposon  
At2g10720	chr2:004218314	0.0	C/4218314-4218787	AT2G10720.1  mRNA_TE_gene  pseudo  gene_syn T6A13.18  note Transposable element gene, pseudogene, hypothetical protein  
At2g10730	chr2:004219436	0.0	C/4219436-4219773	AT2G10730.1  mRNA_TE_gene  pseudo  gene_syn T6A13.1  note Transposable element gene, pseudogene, hypothetical protein, similar to MURA transposase of maize Mutator transposon  
At2g10735	chr2:004224085	0.0	C/4224085-4226506	AT2G10735.1  pseudogenic_transcript  pseudo  gene_syn T6A13.20  note pseudogene, hypothetical protein  
At2g10760	chr2:004231553	0.0	W/4231553-4235631	AT2G10760.1  mRNA_TE_gene  pseudo  gene_syn T16I21.11  note Transposable element gene, copia-like retrotransposon family, has a 6.5e-285 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At2g10770	chr2:004236739	0.0	C/4236739-4237199	AT2G10770.1  mRNA_TE_gene  pseudo  gene_syn T16I21.10  note Transposable element gene, pseudogene, hypothetical protein  
At2g10780	chr2:004237680	0.0	W/4237680-4243055	AT2G10780.1  mRNA_TE_gene  pseudo  gene_syn T16I21.9, T16I21_9  note Transposable element gene, gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At2g10790	chr2:004243132	0.0	C/4243132-4243592	AT2G10790.1  mRNA_TE_gene  pseudo  gene_syn T16I21.8  note Transposable element gene, pseudogene, hypothetical protein  
At2g10800	chr2:004246280	0.0	C/4246280-4249259	AT2G10800.1  mRNA_TE_gene  pseudo  gene_syn T16I21.7  note Transposable element gene, copia-like retrotransposon family, has a 5.9e-92 P-value blast match to GB:AAD12998 pol polyprotein (Ty1_Copia-element) (Zea mays)  
At2g10802	chr2:004251566	0.0	W/4251566-4252690	AT2G10802.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 3.5e-28 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)  
At2g10810	chr2:004252708	0.0	C/4252708-4254867	AT2G10810.1  mRNA_TE_gene  pseudo  gene_syn T16I21.6  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.9e-39 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g10820	chr2:004256189	0.0	W/4256189-4261900	AT2G10820.1  mRNA_TE_gene  pseudo  gene_syn T16I21.5  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 9.8e-34 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)  
At2g10830	chr2:004265054	0.0	W/4265054-4266487	AT2G10830.1  mRNA_TE_gene  pseudo  gene_syn T16I21.4  note Transposable element gene, pseudogene, hypothetical protein  
At2g10833	chr2:004267370	0.0	W/4267370-4268691	AT2G10833.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g10836	chr2:004269615	0.0	W/4269615-4271232	AT2G10836.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to cytochrome P-450 aromatase-related [Arabidopsis thaliana] (TAIR:AT2G10470.1); similar to cytochrome P-450 aromatase-related [Arabidopsis thaliana] (TAIR:AT4G07435.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At2g10840	chr2:004272270	0.0	W/4272270-4273294	AT2G10840.1  mRNA_TE_gene  pseudo  gene_syn T16I21.3, T16I21_3  note Transposable element gene, pseudogene, hypothetical protein, similar to At5g35280, At2g10500, At2g05860, At4g07310, At4g07430, At1g39270  
At2g10850	chr2:004276324	0.0	C/4276324-4277505	AT2G10850.2  mRNA_TE_gene  pseudo  gene_syn F16G22.9, F16G22_9  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G43970.1); similar to envelope-like [Glycine max] (GB:AAC24322.1)  transcript_id AT2G10850.2  
At2g10850	chr2:004276594	0.0	C/4276594-4277451	AT2G10850.1  mRNA_TE_gene  pseudo  gene_syn F16G22.9, F16G22_9  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G43970.1); similar to envelope-like [Glycine max] (GB:AAC24322.1)  
At2g10860	chr2:004278407	0.0	C/4278407-4281427	AT2G10860.1  mRNA_TE_gene  pseudo  gene_syn F16G22.8, F16G22_8  note Transposable element gene, copia-like retrotransposon family, has a 1.2e-156 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At2g10870	chr2:004283680	0.0	W/4283680-4283931	AT2G10870.1  mRNA_TE_gene  pseudo  gene_syn F16G22.7, F16G22_7  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48250.1)  
At2g10880	chr2:004284911	0.0	C/4284911-4286083	AT2G10880.1  mRNA_TE_gene  pseudo  gene_syn F16G22.6, F16G22_6  note Transposable element gene, hypothetical protein, similar to hypothetical protein GB:AAC26673  
At2g10890	chr2:004287911	0.0	C/4287911-4291049	AT2G10890.1  mRNA_TE_gene  pseudo  gene_syn F16G22.5  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.5e-185 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g10895	chr2:004292185	0.0	C/4292185-4292868	AT2G10895.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g10900	chr2:004293805	0.0	W/4293805-4295583	AT2G10900.1  mRNA_TE_gene  pseudo  gene_syn F16G22.4, F16G22_4  function similarity to non-LTR retroelement protein  note Transposable element gene, expressed protein  
At2g10910	chr2:004296275	0.0	W/4296275-4300873	AT2G10910.1  mRNA_TE_gene  pseudo  gene_syn F16G22.3  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.5e-24 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At2g10920	chr2:004301883	0.0	C/4301883-4302080	AT2G10920.1  CDS  gene_syn F16G22.2, F16G22_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G10920.1p  transcript_id AT2G10920.1  protein_id AT2G10920.1p  transcript_id AT2G10920.1  
At2g10921	chr2:004301932	0.0	W/4301932-4303080	AT2G10921.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G10920  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G10921.1  
At2g10930	chr2:004303733	0.0	C/4303733-4303918,4303529-4303703,4303318-4303406	AT2G10930.1  CDS  gene_syn F16G22.1, F16G22_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48500.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G10930.1p  transcript_id AT2G10930.1  protein_id AT2G10930.1p  transcript_id AT2G10930.1  
At2g10931	chr2:004305492	0.0	C/4305492-4305692	AT2G10931.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G10931.1p  transcript_id AT2G10931.1  protein_id AT2G10931.1p  transcript_id AT2G10931.1  
At2g10940	chr2:004311160	0.0	C/4311160-4312035	AT2G10940.1  CDS  gene_syn F15K19.1, F15K19_1  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process lipid transport|GO:0006869||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: chloroplast thylakoid membrane, apoplast, chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT1G62500.1); Has 41695 Blast hits to 15869 proteins in 1031 species: Archae - 182; Bacteria - 8355; Metazoa - 15253; Fungi - 3374; Plants - 6727; Viruses - 1536; Other Eukaryotes - 6268 (source: NCBI BLink).  protein_id AT2G10940.1p  transcript_id AT2G10940.1  protein_id AT2G10940.1p  transcript_id AT2G10940.1  
At2g10940	chr2:004311160	0.0	C/4311160-4312035	AT2G10940.2  CDS  gene_syn F15K19.1, F15K19_1  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process lipid transport|GO:0006869||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: chloroplast thylakoid membrane, apoplast, chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT1G62500.1); Has 41695 Blast hits to 15869 proteins in 1031 species: Archae - 182; Bacteria - 8355; Metazoa - 15253; Fungi - 3374; Plants - 6727; Viruses - 1536; Other Eukaryotes - 6268 (source: NCBI BLink).  protein_id AT2G10940.2p  transcript_id AT2G10940.2  protein_id AT2G10940.2p  transcript_id AT2G10940.2  
At2g10950	chr2:004317386	0.0	C/4317386-4317800,4316199-4316383,4315534-4315944	AT2G10950.1  CDS  gene_syn F15K19.2, F15K19_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product BSD domain-containing protein  note BSD domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT5G65910.1); Has 132 Blast hits to 124 proteins in 24 species: Archae - 0; Bacteria - 2; Metazoa - 28; Fungi - 2; Plants - 81; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT2G10950.1p  transcript_id AT2G10950.1  protein_id AT2G10950.1p  transcript_id AT2G10950.1  
At2g10960	chr2:004319551	0.0	C/4319551-4321468	AT2G10960.1  mRNA_TE_gene  pseudo  gene_syn F15K19.3  note Transposable element gene, Mutator-like transposase family, has a 1.2e-18 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At2g10965	chr2:004323671	0.0	W/4323671-4323865,4323937-4324003,4324079-4324165,4324499-4324598,4324648-4324948	AT2G10965.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G07215.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G10965.1p  transcript_id AT2G10965.1  protein_id AT2G10965.1p  transcript_id AT2G10965.1  
At2g10970	chr2:004332948	0.0	C/4332948-4333532	AT2G10970.1  CDS  gene_syn F15K19.4, F15K19_4  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G10970.1p  transcript_id AT2G10970.1  protein_id AT2G10970.1p  transcript_id AT2G10970.1  
At2g10975	chr2:004335137	0.0	W/4335137-4335211,4335524-4335667,4335727-4335909	AT2G10975.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 5 Blast hits to 5 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G10975.1p  transcript_id AT2G10975.1  protein_id AT2G10975.1p  transcript_id AT2G10975.1  
At2g10980	chr2:004336273	0.0	W/4336273-4337467	AT2G10980.1  mRNA_TE_gene  pseudo  gene_syn F15K19.5  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15310.1); similar to Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; Bacterial adhesion [Medicago truncatula] (GB:ABE85525.1); contains InterPro domain Protein of unknown function DUF635; (InterPro:IPR006912); contains InterPro domain Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; (InterPro:IPR008930)  
At2g10990	chr2:004339443	0.0	W/4339443-4340424	AT2G10990.1  pseudogenic_transcript  pseudo  gene_syn F15K19.6  note pseudogene, hypothetical protein  
At2g11000	chr2:004347633	0.0	C/4347633-4347768,4347493-4347560,4347224-4347379,4346918-4347085,4346275-4346419,4345756-4345841,4344897-4345169,4344666-4344809,4343862-4343993,4343373-4343471,4343173-4343232,4342769-4342973,4342509-4342627,4342347-4342415,4342111-4342209,4341328-4341555	AT2G11000.1  CDS  gene_syn ARABIDOPSIS THALIANA MAK10 HOMOLOGUE, ATMAK10, F15K19.7, F15K19_7, MAK10  gene ATMAK10  function Encodes a non-functional Arabidopsis homolog of the yeast protein MAK10, a component of the N-terminal acetyltransferase complex C. Mutant plants have normal photosynthesis as well as growth rates and pigmentation comparable to wild type.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function acetyltransferase activity|GO:0016407|12897255|IGI  go_function acetyltransferase activity|GO:0016407||ISS  product ATMAK10; acetyltransferase  note ATMAK10; FUNCTIONS IN: acetyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mak10 subunit, NatC N(alpha)-terminal acetyltransferase (InterPro:IPR007244); Has 253 Blast hits to 244 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 84; Plants - 18; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT2G11000.1p  transcript_id AT2G11000.1  protein_id AT2G11000.1p  transcript_id AT2G11000.1  
At2g11000	chr2:004347633	0.0	C/4347633-4347768,4347493-4347560,4347224-4347379,4346918-4347085,4346275-4346419,4345761-4345841,4344897-4345129,4344666-4344809,4343862-4343993,4343373-4343471,4343173-4343232,4342769-4342973,4342509-4342627,4342347-4342415,4342111-4342209,4341328-4341555	AT2G11000.2  CDS  gene_syn ARABIDOPSIS THALIANA MAK10 HOMOLOGUE, ATMAK10, F15K19.7, F15K19_7, MAK10  gene ATMAK10  function Encodes a non-functional Arabidopsis homolog of the yeast protein MAK10, a component of the N-terminal acetyltransferase complex C. Mutant plants have normal photosynthesis as well as growth rates and pigmentation comparable to wild type.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function acetyltransferase activity|GO:0016407|12897255|IGI  go_function acetyltransferase activity|GO:0016407||ISS  product ATMAK10; acetyltransferase  note ATMAK10; FUNCTIONS IN: acetyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mak10 subunit, NatC N(alpha)-terminal acetyltransferase (InterPro:IPR007244); Has 253 Blast hits to 246 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 84; Plants - 18; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT2G11000.2p  transcript_id AT2G11000.2  protein_id AT2G11000.2p  transcript_id AT2G11000.2  
At2g11005	chr2:004348511	0.0	W/4348511-4348530,4348652-4349043,4349477-4349577	AT2G11005.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 82083 Blast hits to 20901 proteins in 1298 species: Archae - 258; Bacteria - 23335; Metazoa - 24581; Fungi - 4939; Plants - 7997; Viruses - 1735; Other Eukaryotes - 19238 (source: NCBI BLink).  protein_id AT2G11005.1p  transcript_id AT2G11005.1  protein_id AT2G11005.1p  transcript_id AT2G11005.1  
At2g11010	chr2:004361869	0.0	W/4361869-4361980,4362312-4362670,4362800-4362992,4363069-4363316,4363340-4363474,4363508-4363642,4363853-4364253,4365347-4365458,4365533-4365919	AT2G11010.1  CDS  gene_syn F15K19.8, F15K19_8  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT5G32590.1); Has 335 Blast hits to 324 proteins in 75 species: Archae - 6; Bacteria - 34; Metazoa - 162; Fungi - 22; Plants - 68; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT2G11010.1p  transcript_id AT2G11010.1  protein_id AT2G11010.1p  transcript_id AT2G11010.1  
At2g11015	chr2:004366200	0.0	W/4366200-4366640	AT2G11015.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G29050.1); Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G11015.1p  transcript_id AT2G11015.1  protein_id AT2G11015.1p  transcript_id AT2G11015.1  
At2g11020	chr2:004366856	0.0	C/4366856-4370211	AT2G11020.1  mRNA_TE_gene  pseudo  gene_syn F15K19.9  note Transposable element gene, gypsy-like retrotransposon family, has a 8.5e-181 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At2g11030	chr2:004370829	0.0	C/4370829-4374970	AT2G11030.1  mRNA_TE_gene  pseudo  gene_syn F15K19.10  note Transposable element gene, pseudogene, hypothetical protein  
At2g11040	chr2:004375864	0.0	C/4375864-4379651	AT2G11040.1  mRNA_TE_gene  pseudo  gene_syn F15K19.11  note Transposable element gene, pseudogene, hypothetical protein  
At2g11050	chr2:004379746	0.0	W/4379746-4385431	AT2G11050.1  mRNA_TE_gene  pseudo  gene_syn F15K19.12  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.7e-211 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g11060	chr2:004386371	0.0	C/4386371-4389560	AT2G11060.1  mRNA_TE_gene  pseudo  gene_syn F15K19.13  note Transposable element gene, CACTA-like transposase family (Tnp1/En/Spm), has a 7.0e-150 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)  
At2g11070	chr2:004389579	0.0	C/4389579-4393073	AT2G11070.1  mRNA_TE_gene  pseudo  gene_syn F15K19.14  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 0. P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At2g11080	chr2:004397840	0.0	W/4397840-4398442	AT2G11080.1  mRNA_TE_gene  pseudo  gene_syn F15K19.15  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 6.0e-05 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g11090	chr2:004399434	0.0	C/4399434-4399960	AT2G11090.1  mRNA_TE_gene  pseudo  gene_syn F15K19.16, F15K19_16  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G07880.1)  
At2g11100	chr2:004400057	0.0	W/4400057-4402144	AT2G11100.1  mRNA_TE_gene  pseudo  gene_syn F15K19.17  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 8.0e-21 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g11110	chr2:004404376	0.0	C/4404376-4406419	AT2G11110.1  mRNA_TE_gene  pseudo  gene_syn T13H18.1, T13H18_1  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 6.4e-110 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At2g11115	chr2:004408188	0.0	C/4408188-4408703	AT2G11115.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g11120	chr2:004409345	0.0	C/4409345-4410577	AT2G11120.1  mRNA_TE_gene  pseudo  gene_syn T13H18.2, T13H18_2  function similarity to putative Athila retroelement ORF1 protein  note Transposable element gene, pseudogene, expressed protein  
At2g11130	chr2:004411207	0.0	C/4411207-4412490	AT2G11130.1  mRNA_TE_gene  pseudo  gene_syn T13H18.3, T13H18_3  note Transposable element gene, gypsy-like retrotransposon family, has a 1.0e-35 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At2g11135	chr2:004413199	0.0	C/4413199-4413707	AT2G11135.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G04273.1)  
At2g11140	chr2:004416608	0.0	C/4416608-4418539	AT2G11140.1  mRNA_TE_gene  pseudo  gene_syn T13H18.4, T13H18_4  note Transposable element gene, copia-like retrotransposon family, has a 1.0e-71 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At2g11150	chr2:004419683	0.0	C/4419683-4422079	AT2G11150.1  mRNA_TE_gene  pseudo  gene_syn T13H18.5, T13H18_5  function pseudogene of putative replication protein A1  note Transposable element gene, pseudogene, expressed protein  
At2g11165	chr2:004424294	0.0	C/4424294-4428281	AT2G11165.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g11166	chr2:004430625	0.0	C/4430625-4431200	AT2G11166.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g11168	chr2:004431971	0.0	C/4431971-4432881	AT2G11168.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g11170	chr2:004433758	0.0	C/4433758-4438035	AT2G11170.1  mRNA_TE_gene  pseudo  gene_syn T13H18.7, T13H18_7  note Transposable element gene, pseudogene, hypothetical protein  
At2g11180	chr2:004442364	0.0	W/4442364-4445583	AT2G11180.1  mRNA_TE_gene  pseudo  gene_syn T13H18.8, T13H18_8  note Transposable element gene, copia-like retrotransposon family, has a 4.9e-49 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)  
At2g11190	chr2:004446816	0.0	C/4446816-4448957	AT2G11190.1  mRNA_TE_gene  pseudo  gene_syn T13H18.9, T13H18_9  note Transposable element gene, copia-like retrotransposon family, has a 3.5e-90 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)  
At2g11200	chr2:004451924	0.0	W/4451924-4452388	AT2G11200.1  CDS  gene_syn T13H18.10, T13H18_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G17320.1); Has 337 Blast hits to 337 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 336; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G11200.1p  transcript_id AT2G11200.1  protein_id AT2G11200.1p  transcript_id AT2G11200.1  
At2g11210	chr2:004453641	0.0	W/4453641-4455494	AT2G11210.1  mRNA_TE_gene  pseudo  gene_syn T13H18.11, T13H18_11  note Transposable element gene, Mutator-like transposase family, has a 1.1e-93 P-value blast match to Q9ZQM3 /24-192 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g11220	chr2:004460460	0.0	W/4460460-4462103	AT2G11220.1  mRNA_TE_gene  pseudo  gene_syn T13H18.12, T13H18_12  note Transposable element gene, copia-like retrotransposon family, has a 3.5e-16 P-value blast match to gb|AAO73521.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At2g11230	chr2:004463180	0.0	W/4463180-4467589	AT2G11230.1  mRNA_TE_gene  pseudo  gene_syn T13H18.13, T13H18_13  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 8.9e-61 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g11235	chr2:004468250	0.0	W/4468250-4470655	AT2G11235.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.6e-94 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At2g11240	chr2:004477686	0.0	C/4477686-4483748	AT2G11240.1  mRNA_TE_gene  pseudo  gene_syn T13H18.14, T13H18_14  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.1e-38 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At2g11270	chr2:004484720	0.0	W/4484720-4484767,4485015-4485161,4485252-4485308	AT2G11270.1  CDS  gene_syn T13H18.17, T13H18_17  go_process cellular carbohydrate metabolic process|GO:0044262||IEA  go_function transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer|GO:0046912||IEA  go_component cellular_component|GO:0005575||ND  product citrate synthase-related  note citrate synthase-related; FUNCTIONS IN: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer; INVOLVED IN: cellular carbohydrate metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Citrate synthase-like (InterPro:IPR002020); BEST Arabidopsis thaliana protein match is: CSY5 (citrate synthase 5); citrate (SI)-synthase/ transferase, transferring acyl groups, acyl groups converted into alkyl on transfer (TAIR:AT3G60100.1); Has 110 Blast hits to 110 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 65; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G11270.1p  transcript_id AT2G11270.1  protein_id AT2G11270.1p  transcript_id AT2G11270.1  
At2g11271	chr2:004485414	0.0	C/4485414-4485539	AT2G11271.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G11271.1p  transcript_id AT2G11271.1  protein_id AT2G11271.1p  transcript_id AT2G11271.1  
At2g11280	chr2:004486266	0.0	W/4486266-4487577	AT2G11280.1  pseudogenic_transcript  pseudo  gene_syn F3K12.20  note pseudogene, hypothetical protein  
At2g11290	chr2:004489160	0.0	W/4489160-4490694	AT2G11290.1  mRNA_TE_gene  pseudo  gene_syn F3K12.19  note Transposable element gene, gypsy-like retrotransposon family, has a 1.2e-92 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At2g11300	chr2:004491277	0.0	W/4491277-4493954	AT2G11300.1  mRNA_TE_gene  pseudo  gene_syn F3K12.18  note Transposable element gene, pseudogene, hypothetical protein, similar to GB:AAD38224  
At2g11310	chr2:004494444	0.0	C/4494444-4500207	AT2G11310.1  mRNA_TE_gene  pseudo  gene_syn F3K12.17  note Transposable element gene, gypsy-like retrotransposon family, has a 9.3e-175 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays)  
At2g11320	chr2:004500770	0.0	W/4500770-4507570	AT2G11320.1  mRNA_TE_gene  pseudo  gene_syn F3K12.16  note Transposable element gene, pseudogene, similar to putative helicase, blastp match of 41% identity and 1.7e-199 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)}  
At2g11330	chr2:004509242	0.0	W/4509242-4512287	AT2G11330.1  mRNA_TE_gene  pseudo  gene_syn F3K12.15  note Transposable element gene, Mutator-like transposase family, has a 5.3e-78 P-value blast match to Q9ZQM3 /24-192 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g11340	chr2:004514861	0.0	C/4514861-4520662	AT2G11340.1  mRNA_TE_gene  pseudo  gene_syn F3K12.14  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.5e-221 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g11345	chr2:004522602	0.0	C/4522602-4523297	AT2G11345.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G04130.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At2g11350	chr2:004526980	0.0	W/4526980-4529724	AT2G11350.1  mRNA_TE_gene  pseudo  gene_syn F3K12.13  note Transposable element gene, Mutator-like transposase family, has a 9.4e-56 P-value blast match to O22273 /233-373 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g11360	chr2:004530893	0.0	C/4530893-4531503	AT2G11360.1  mRNA_TE_gene  pseudo  gene_syn F3K12.12, F3K12_12  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G24900.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At2g11370	chr2:004531705	0.0	W/4531705-4532311	AT2G11370.1  mRNA_TE_gene  pseudo  gene_syn F3K12.11, F3K12_11  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30590.1)  
At2g11380	chr2:004535097	0.0	W/4535097-4535853	AT2G11380.1  mRNA_TE_gene  pseudo  gene_syn F3K12.10  note Transposable element gene, pseudogene, hypothetical protein  
At2g11390	chr2:004536804	0.0	W/4536804-4537705	AT2G11390.1  mRNA_TE_gene  pseudo  gene_syn F3K12.9, F3K12_9  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 1.2e-21 P-value blast match to At5g59620.1/14-257 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At2g11400	chr2:004538804	0.0	C/4538804-4539422	AT2G11400.1  mRNA_TE_gene  pseudo  gene_syn F3K12.8  note Transposable element gene, pseudogene, hypothetical protein  
At2g11405	chr2:004543175	0.0	W/4543175-4543522	AT2G11405.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G11405.1p  transcript_id AT2G11405.1  protein_id AT2G11405.1p  transcript_id AT2G11405.1  
At2g11410	chr2:004543932	0.0	W/4543932-4547916	AT2G11410.1  mRNA_TE_gene  pseudo  gene_syn F3K12.7  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 3.9e-28 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At2g11420	chr2:004556995	0.0	W/4556995-4558533	AT2G11420.1  mRNA_TE_gene  pseudo  gene_syn F3K12.6  note Transposable element gene, pseudogene, similar to putative helicase, PIF1 family of mitochondrial helicases; blastp match of 38% identity and 3.4e-72 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)}  
At2g11430	chr2:004559903	0.0	C/4559903-4564733	AT2G11430.1  mRNA_TE_gene  pseudo  gene_syn F3K12.5  note Transposable element gene, gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At2g11440	chr2:004566607	0.0	W/4566607-4567777	AT2G11440.1  pseudogenic_transcript  pseudo  gene_syn F3K12.4  note pseudogene, hypothetical protein  
At2g11450	chr2:004573616	0.0	C/4573616-4581219	AT2G11450.1  mRNA_TE_gene  pseudo  gene_syn F3K12.3  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.7e-208 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g11460	chr2:004585885	0.0	C/4585885-4586249	AT2G11460.1  mRNA_TE_gene  pseudo  gene_syn F3K12.2  note Transposable element gene, pseudogene, hypothetical protein  
At2g11462	chr2:004590177	0.0	C/4590177-4590378,4589956-4590041,4589735-4589881	AT2G11462.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G11462.1p  transcript_id AT2G11462.1  protein_id AT2G11462.1p  transcript_id AT2G11462.1  
At2g11465	chr2:004596448	0.0	W/4596448-4597861	AT2G11465.1  mRNA_TE_gene  pseudo  gene_syn F14P14.21  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.4e-40 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g11480	chr2:004598895	0.0	W/4598895-4602284	AT2G11480.1  mRNA_TE_gene  pseudo  gene_syn F14P14.19, F14P14_19  note Transposable element gene, pseudogene, hypothetical protein  
At2g11485	chr2:004603182	0.0	W/4603182-4603562	AT2G11485.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g11490	chr2:004604293	0.0	W/4604293-4604960	AT2G11490.1  mRNA_TE_gene  pseudo  gene_syn F14P14.18, F14P14_18  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28980.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35090.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At2g11500	chr2:004605504	0.0	W/4605504-4607971	AT2G11500.1  mRNA_TE_gene  pseudo  gene_syn F14P14.17  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 2.0e-151 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At2g11502	chr2:004608075	0.0	W/4608075-4608311	AT2G11502.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g11504	chr2:004609113	0.0	W/4609113-4609463	AT2G11504.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g11507	chr2:004610150	0.0	W/4610150-4610989	AT2G11507.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g11510	chr2:004611625	0.0	C/4611625-4613625	AT2G11510.1  mRNA_TE_gene  pseudo  gene_syn F14P14.16  note Transposable element gene, Mutator-like transposase family, has a 5.1e-64 P-value blast match to Q9S9L6 /322-461 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g11520	chr2:004619145	0.0	W/4619145-4619439,4619525-4619716,4619804-4620087,4620444-4620609,4620695-4620784,4620872-4621170,4621242-4621448	AT2G11520.1  CDS  gene_syn CALMODULIN-BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE 3, CRCK3, F14P14.15, F14P14_15  gene CRCK3  function high overall homology to CRCK1  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product CRCK3; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note CRCK3; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CRCK1 (CALMODULIN-BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G58940.1); Has 89387 Blast hits to 88153 proteins in 3549 species: Archae - 50; Bacteria - 8202; Metazoa - 39262; Fungi - 7036; Plants - 18889; Viruses - 467; Other Eukaryotes - 15481 (source: NCBI BLink).  protein_id AT2G11520.1p  transcript_id AT2G11520.1  protein_id AT2G11520.1p  transcript_id AT2G11520.1  
At2g11522	chr2:004622370	0.0	W/4622370-4622495	AT2G11522.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G11522.1p  transcript_id AT2G11522.1  protein_id AT2G11522.1p  transcript_id AT2G11522.1  
At2g11530	chr2:004624739	0.0	W/4624739-4626409	AT2G11530.1  mRNA_TE_gene  pseudo  gene_syn F14P14.14  note Transposable element gene, Mutator-like transposase family, has a 1.4e-24 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g11550	chr2:004626902	0.0	C/4626902-4631904	AT2G11550.1  mRNA_TE_gene  pseudo  gene_syn F14P14.12  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 0. P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At2g11570	chr2:004634889	0.0	C/4634889-4635203,4634251-4634853	AT2G11570.1  CDS  gene_syn F14P14.10, F14P14_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 27 Blast hits to 25 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 4; Plants - 5; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT2G11570.1p  transcript_id AT2G11570.1  protein_id AT2G11570.1p  transcript_id AT2G11570.1  
At2g11590	chr2:004635950	0.0	C/4635950-4641226	AT2G11590.1  mRNA_TE_gene  pseudo  gene_syn F14P14.8  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 0. P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At2g11600	chr2:004643839	0.0	C/4643839-4645638	AT2G11600.1  mRNA_TE_gene  pseudo  gene_syn F14P14.7, F14P14_7  note Transposable element gene, pseudogene, hypothetical protein, and genefinder  
At2g11610	chr2:004656594	0.0	W/4656594-4657756	AT2G11610.1  mRNA_TE_gene  pseudo  gene_syn F14P14.6  note Transposable element gene, Mutator-like transposase family, has a 2.6e-24 P-value blast match to O22278 /203-375 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g11620	chr2:004658445	0.0	W/4658445-4658520,4658772-4658840,4658938-4659018,4659351-4659482,4659578-4659649,4659732-4660777	AT2G11620.1  CDS  gene_syn F14P14.5, F14P14_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G45800.1); Has 51 Blast hits to 33 proteins in 14 species: Archae - 0; Bacteria - 6; Metazoa - 2; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT2G11620.1p  transcript_id AT2G11620.1  protein_id AT2G11620.1p  transcript_id AT2G11620.1  
At2g11623	chr2:004661281	0.0	C/4661281-4661415,4661038-4661143,4660870-4660961	AT2G11623.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G45800.1); Has 73 Blast hits to 73 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G11623.1p  transcript_id AT2G11623.1  protein_id AT2G11623.1p  transcript_id AT2G11623.1  
At2g11626	chr2:004661458	0.0	W/4661458-4661574,4661661-4662054,4662145-4662207,4662297-4662451	AT2G11626.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: beta-galactosidase (TAIR:AT2G04378.2); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G11626.1p  transcript_id AT2G11626.1  protein_id AT2G11626.1p  transcript_id AT2G11626.1  
At2g11630	chr2:004665328	0.0	W/4665328-4666952	AT2G11630.1  pseudogenic_transcript  pseudo  gene_syn F14P14.4  note pseudogene, similar to P0005C02.7, blastp match of 61% identity and 1.2e-108 P-value to GP|24414144|dbj|BAC22388.1||AP004554 P0005C02.7 {Oryza sativa (japonica cultivar-group)}  
At2g11640	chr2:004669997	0.0	W/4669997-4671816	AT2G11640.1  mRNA_TE_gene  pseudo  gene_syn F14P14.3  note Transposable element gene, pseudogene, replication protein A1  
At2g11650	chr2:004676310	0.0	C/4676310-4677842	AT2G11650.1  mRNA_TE_gene  pseudo  gene_syn F14P14.2, F14P14_2  note Transposable element gene, pseudogene, hypothetical protein, and genefinder  
At2g11651	chr2:004677983	0.0	W/4677983-4678120	AT2G11651.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G11651.1p  transcript_id AT2G11651.1  protein_id AT2G11651.1p  transcript_id AT2G11651.1  
At2g11660	chr2:004678820	0.0	C/4678820-4681848	AT2G11660.1  mRNA_TE_gene  pseudo  gene_syn F14P14.1  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.8e-201 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g11670	chr2:004685014	0.0	W/4685014-4687082	AT2G11670.1  mRNA_TE_gene  pseudo  gene_syn F23M2.30  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 1.2e-89 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At2g11680	chr2:004688370	0.0	W/4688370-4690847	AT2G11680.1  mRNA_TE_gene  pseudo  gene_syn F7E22.15, F7E22_15  note Transposable element gene, gypsy-like retrotransposon family, has a 3.4e-54 P-value blast match to GB:CAB39733 rotease, reverse transcriptase, ribonuclease H, integrase (Gypsy_Ty3-element) (Drosophila buzzatii)  
At2g11690	chr2:004691738	0.0	C/4691738-4693050	AT2G11690.1  mRNA_TE_gene  pseudo  gene_syn F7E22.14, F7E22_14  note Transposable element gene, CACTA-like transposase family (Tnp1/En/Spm), has a 4.8e-34 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)  
At2g11700	chr2:004694285	0.0	W/4694285-4696325	AT2G11700.1  mRNA_TE_gene  pseudo  gene_syn F7E22.13  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.2e-72 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g11720	chr2:004699172	0.0	C/4699172-4703974	AT2G11720.1  mRNA_TE_gene  pseudo  gene_syn F7E22.17  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 1.1e-150 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At2g11730	chr2:004704285	0.0	W/4704285-4706507	AT2G11730.1  mRNA_TE_gene  pseudo  gene_syn F7E22.12  note Transposable element gene, copia-like retrotransposon family, has a 7.2e-39 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)  
At2g11740	chr2:004706901	0.0	C/4706901-4708590	AT2G11740.1  mRNA_TE_gene  pseudo  gene_syn F7E22.11  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 4.3e-88 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At2g11750	chr2:004711129	0.0	W/4711129-4713879	AT2G11750.1  mRNA_TE_gene  pseudo  gene_syn F7E22.10  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.0e-85 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g11770	chr2:004716555	0.0	W/4716555-4722974	AT2G11770.1  mRNA_TE_gene  pseudo  gene_syn F7E22.8  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.2e-100 P-value blast match to gb|AAL06422.1|AF378081_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At2g11773	chr2:004724036	0.0	C/4724036-4724143	AT2G11773.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G11773.1p  transcript_id AT2G11773.1  protein_id AT2G11773.1p  transcript_id AT2G11773.1  
At2g11775	chr2:004724382	0.0	C/4724382-4725219	AT2G11775.1  mRNA_TE_gene  pseudo  note Transposable element gene  
At2g11778	chr2:004728072	0.0	W/4728072-4728239	AT2G11778.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G11778.1p  transcript_id AT2G11778.1  protein_id AT2G11778.1p  transcript_id AT2G11778.1  
At2g11780	chr2:004729678	0.0	W/4729678-4732966	AT2G11780.1  mRNA_TE_gene  pseudo  gene_syn F7E22.7  note Transposable element gene, pseudogene, hypothetical protein  
At2g11790	chr2:004734652	0.0	C/4734652-4736839	AT2G11790.1  mRNA_TE_gene  pseudo  gene_syn F7E22.6  note Transposable element gene, Mutator-like transposase family, has a 5.6e-58 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g11800	chr2:004737795	0.0	C/4737795-4742118	AT2G11800.1  mRNA_TE_gene  pseudo  gene_syn F7E22.5  note Transposable element gene, gypsy-like retrotransposon family, has a 3.1e-14 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At2g11810	chr2:004743388	0.0	W/4743388-4743705,4744323-4744495,4744591-4744752,4745574-4745715,4745807-4746031,4746116-4746178,4746219-4746224	AT2G11810.2  CDS  gene_syn ATMGD3, F7E22.4, F7E22_4, MGD3, MGDC, MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 3, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE TYPE C  gene MGDC  function MGD3 is the major enzyme for galactolipid metabolism during phosphate starvation. Does not contribute to galactolipid synthesis under P1-sufficient conditions.  go_component chloroplast outer membrane|GO:0009707|11553816|IDA  go_process fatty acid metabolic process|GO:0006631|18808455|IGI  go_process fatty acid metabolic process|GO:0006631|18808455|IMP  go_process cellular response to phosphate starvation|GO:0016036|11553816|IEP  go_process cellular response to phosphate starvation|GO:0016036|18808455|IGI  go_process galactolipid metabolic process|GO:0019374|18808455|IGI  go_process galactolipid metabolic process|GO:0019374|18808455|IMP  go_process galactolipid biosynthetic process|GO:0019375|11553816|TAS  go_function 1,2-diacylglycerol 3-beta-galactosyltransferase activity|GO:0046509|11553816|IDA  product MGDC; 1,2-diacylglycerol 3-beta-galactosyltransferase  note MGDC; FUNCTIONS IN: 1,2-diacylglycerol 3-beta-galactosyltransferase activity; INVOLVED IN: cellular response to phosphate starvation, fatty acid metabolic process, galactolipid biosynthetic process, galactolipid metabolic process; LOCATED IN: chloroplast outer membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Monogalactosyldiacylglycerol synthase (InterPro:IPR009695); BEST Arabidopsis thaliana protein match is: MGD2; 1,2-diacylglycerol 3-beta-galactosyltransferase/ UDP-galactosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT5G20410.1); Has 468 Blast hits to 468 proteins in 163 species: Archae - 0; Bacteria - 385; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT2G11810.2p  transcript_id AT2G11810.2  protein_id AT2G11810.2p  transcript_id AT2G11810.2  
At2g11810	chr2:004743388	0.0	W/4743388-4743705,4744323-4744495,4744591-4744752,4745574-4745715,4745807-4746031,4746116-4746178,4746245-4746319,4746394-4746633	AT2G11810.1  CDS  gene_syn ATMGD3, F7E22.4, F7E22_4, MGD3, MGDC, MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 3, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE TYPE C  gene MGDC  function MGD3 is the major enzyme for galactolipid metabolism during phosphate starvation. Does not contribute to galactolipid synthesis under P1-sufficient conditions.  go_component chloroplast outer membrane|GO:0009707|11553816|IDA  go_process fatty acid metabolic process|GO:0006631|18808455|IGI  go_process fatty acid metabolic process|GO:0006631|18808455|IMP  go_process cellular response to phosphate starvation|GO:0016036|11553816|IEP  go_process cellular response to phosphate starvation|GO:0016036|18808455|IGI  go_process galactolipid metabolic process|GO:0019374|18808455|IGI  go_process galactolipid metabolic process|GO:0019374|18808455|IMP  go_process galactolipid biosynthetic process|GO:0019375|11553816|TAS  go_function 1,2-diacylglycerol 3-beta-galactosyltransferase activity|GO:0046509|11553816|IDA  product MGDC; 1,2-diacylglycerol 3-beta-galactosyltransferase  note MGDC; FUNCTIONS IN: 1,2-diacylglycerol 3-beta-galactosyltransferase activity; INVOLVED IN: cellular response to phosphate starvation, fatty acid metabolic process, galactolipid biosynthetic process, galactolipid metabolic process; LOCATED IN: chloroplast outer membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296), Monogalactosyldiacylglycerol synthase (InterPro:IPR009695); BEST Arabidopsis thaliana protein match is: MGD2; 1,2-diacylglycerol 3-beta-galactosyltransferase/ UDP-galactosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT5G20410.1); Has 1052 Blast hits to 1052 proteins in 334 species: Archae - 0; Bacteria - 866; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT2G11810.1p  transcript_id AT2G11810.1  protein_id AT2G11810.1p  transcript_id AT2G11810.1  
At2g11820	chr2:004752782	0.0	C/4752782-4756899	AT2G11820.1  mRNA_TE_gene  pseudo  gene_syn F7E22.3  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 6.3e-40 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At2g11830	chr2:004771865	0.0	C/4771865-4773245	AT2G11830.1  mRNA_TE_gene  pseudo  gene_syn F7E22.2, F7E22_2  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G47225.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)  
At2g11840	chr2:004776446	0.0	C/4776446-4779605	AT2G11840.1  mRNA_TE_gene  pseudo  gene_syn F7E22.1  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 5.2e-173 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g11850	chr2:004786697	0.0	C/4786697-4787543	AT2G11850.1  mRNA_TE_gene  pseudo  gene_syn F23M2.1  note Transposable element gene, pseudogene, similar to putative helicase, PIF1 family of mitochondrial helicases; blastp match of 47% identity and 3.0e-34 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)}  
At2g11851	chr2:004789427	0.0	W/4789427-4789648	AT2G11851.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G11851.1p  transcript_id AT2G11851.1  protein_id AT2G11851.1p  transcript_id AT2G11851.1  
At2g11852	chr2:004789637	0.0	C/4789637-4789849	AT2G11852.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G11851  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G11852.1  
At2g11870	chr2:004791149	0.0	C/4791149-4791529	AT2G11870.1  pseudogenic_transcript  pseudo  gene_syn F23M2.3  note pseudogene, hypothetical protein  
At2g11880	chr2:004800143	0.0	W/4800143-4801963	AT2G11880.1  mRNA_TE_gene  pseudo  gene_syn F23M2.4  note Transposable element gene, pseudogene, hypothetical protein  
At2g11890	chr2:004802999	0.0	W/4802999-4803296,4803408-4803631	AT2G11890.2  CDS  function adenylate cyclase  go_process cAMP biosynthetic process|GO:0006171||IEA  go_function adenylate cyclase activity|GO:0004016||IEA  product adenylate cyclase  note adenylate cyclase; FUNCTIONS IN: adenylate cyclase activity; INVOLVED IN: cAMP biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adenylate cyclase (InterPro:IPR008172); Has 33 Blast hits to 33 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G11890.2p  transcript_id AT2G11890.2  protein_id AT2G11890.2p  transcript_id AT2G11890.2  
At2g11890	chr2:004802999	0.0	W/4802999-4803631	AT2G11890.1  CDS  function adenylate cyclase  go_process cAMP biosynthetic process|GO:0006171||IEA  go_function adenylate cyclase activity|GO:0004016||IEA  product adenylate cyclase  note adenylate cyclase; FUNCTIONS IN: adenylate cyclase activity; INVOLVED IN: cAMP biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adenylate cyclase (InterPro:IPR008172); Has 41 Blast hits to 41 proteins in 16 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G11890.1p  transcript_id AT2G11890.1  protein_id AT2G11890.1p  transcript_id AT2G11890.1  
At2g11891	chr2:004804391	0.0	W/4804391-4804558	AT2G11891.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G11891.1p  transcript_id AT2G11891.1  protein_id AT2G11891.1p  transcript_id AT2G11891.1  
At2g11910	chr2:004807048	0.0	C/4807048-4807164,4806309-4806349,4805862-4806210	AT2G11910.1  CDS  gene_syn F23M2.7, F23M2_7  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 87995 Blast hits to 27236 proteins in 1111 species: Archae - 442; Bacteria - 29845; Metazoa - 22247; Fungi - 10740; Plants - 3492; Viruses - 1282; Other Eukaryotes - 19947 (source: NCBI BLink).  protein_id AT2G11910.1p  transcript_id AT2G11910.1  protein_id AT2G11910.1p  transcript_id AT2G11910.1  
At2g11910	chr2:004807048	0.0	C/4807048-4807164,4806309-4806349,4805862-4806210	AT2G11910.2  CDS  gene_syn F23M2.7, F23M2_7  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 87995 Blast hits to 27236 proteins in 1111 species: Archae - 442; Bacteria - 29845; Metazoa - 22247; Fungi - 10740; Plants - 3492; Viruses - 1282; Other Eukaryotes - 19947 (source: NCBI BLink).  protein_id AT2G11910.2p  transcript_id AT2G11910.2  protein_id AT2G11910.2p  transcript_id AT2G11910.2  
At2g11930	chr2:004809841	0.0	W/4809841-4812236	AT2G11930.1  pseudogenic_transcript  pseudo  gene_syn F23M2.9, F23M2_9  note pseudogene, hypothetical protein, and genefinder  
At2g11940	chr2:004812743	0.0	C/4812743-4818142	AT2G11940.1  mRNA_TE_gene  pseudo  gene_syn F23M2.10, F23M2_10  note Transposable element gene, gypsy-like retrotransposon family, has a 7.0e-189 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At2g11950	chr2:004819268	0.0	W/4819268-4825847	AT2G11950.1  mRNA_TE_gene  pseudo  gene_syn F23M2.11, F23M2_11  note Transposable element gene, copia-like retrotransposon family, has a 1.9e-158 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At2g11970	chr2:004826746	0.0	C/4826746-4827503	AT2G11970.1  mRNA_TE_gene  pseudo  gene_syn F23M2.13  note Transposable element gene, Mutator-like transposase family, has a 3.1e-30 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g11980	chr2:004827927	0.0	W/4827927-4829212	AT2G11980.1  mRNA_TE_gene  pseudo  gene_syn F23M2.14  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 3.1e-58 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays)  
At2g11983	chr2:004830686	0.0	W/4830686-4831244	AT2G11983.1  pseudogenic_transcript  pseudo  function Pseudogene of AT3G17910; SURF1 (SURFEIT 1)  
At2g11990	chr2:004833236	0.0	W/4833236-4833625	AT2G11990.1  pseudogenic_transcript  pseudo  gene_syn AGAMOUS-LIKE 88, AGL88, F23M2.15  gene AGL88  note pseudogene, fragment of a MADS-box protein, blastp match of 43% identity and 3.7e-14 P-value to GP|2735764|gb|AAB94005.1||AF008651 MADS transcriptional factor; STMADS16 {Solanum tuberosum}  
At2g12000	chr2:004834744	0.0	W/4834744-4835118	AT2G12000.1  mRNA_TE_gene  pseudo  gene_syn F23M2.16  note Transposable element gene, pseudogene, fragment of a MADS-box protein  
At2g12010	chr2:004839747	0.0	W/4839747-4841689	AT2G12010.1  mRNA_TE_gene  pseudo  gene_syn F23M2.17  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.9e-66 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g12020	chr2:004842128	0.0	W/4842128-4845947	AT2G12020.1  mRNA_TE_gene  pseudo  gene_syn F23M2.18, F23M2_18  note Transposable element gene, gypsy-like retrotransposon family, has a 3.4e-107 P-value blast match to f23m2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)  
At2g12025	chr2:004849946	0.0	C/4849946-4852150	AT2G12025.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.9e-47 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g12040	chr2:004855657	0.0	W/4855657-4856532	AT2G12040.1  mRNA_TE_gene  pseudo  gene_syn F23M2.33  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.5e-96 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g12050	chr2:004857014	0.0	C/4857014-4858186	AT2G12050.1  pseudogenic_transcript  pseudo  gene_syn F23M2.36  note pseudogene, embryogenesis protein-related, similar to BABY BOOM (Arabidopsis thaliana) GI:21069057; contains a non-consensus AT-acceptor splice site. This is very likely a pseudogene.; blastp match of 64% identity and 4.6e-09 P-value to GP|21304225|gb|AAL47210.1||AY062179 aintegumenta-like protein {Oryza sativa}  
At2g12060	chr2:004861656	0.0	W/4861656-4864337	AT2G12060.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, contains Pfam profile PF03384: Drosophila protein of unknown function, DUF287  
At2g12066	chr2:004864909	0.0	C/4864909-4865482	AT2G12066.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to mutator-like transposase, putative  
At2g12083	chr2:004866440	0.0	C/4866440-4868715	AT2G12083.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 4.8e-75 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g12100	chr2:004873587	0.0	W/4873587-4878566	AT2G12100.1  mRNA_TE_gene  pseudo  gene_syn F23M2.25, F23M2_25  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28480.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G42580.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G45090.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653); contains InterPro domain Collagen triple helix repeat; (InterPro:IPR008160)  
At2g12110	chr2:004878936	0.0	W/4878936-4879631	AT2G12110.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42590.1); similar to hypothetical protein 40.t00047 [Brassica oleracea] (GB:ABD65162.1)  
At2g12120	chr2:004880512	0.0	W/4880512-4881207	AT2G12120.1  mRNA_TE_gene  pseudo  gene_syn F23M2.26, F23M2_26  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28482.1); similar to hypothetical protein 40.t00047 [Brassica oleracea] (GB:ABD65162.1)  
At2g12130	chr2:004881880	0.0	W/4881880-4882509	AT2G12130.1  mRNA_TE_gene  pseudo  gene_syn F23M2.27, F23M2_27  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G06700.1)  
At2g12140	chr2:004882928	0.0	C/4882928-4883872	AT2G12140.1  mRNA_TE_gene  pseudo  gene_syn F23M2.32  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G45080.1); similar to Nucleic acid-binding, OB-fold [Medicago truncatula] (GB:ABD33040.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At2g12150	chr2:004884407	0.0	C/4884407-4887236	AT2G12150.1  mRNA_TE_gene  pseudo  gene_syn F23M2.34  note Transposable element gene, Mutator-like transposase family, has a 1.1e-84 P-value blast match to Q9SL18 /349-510 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g12160	chr2:004888068	0.0	C/4888068-4888932	AT2G12160.1  pseudogenic_transcript  pseudo  gene_syn F23M2.35  note pseudogene, hypothetical protein  
At2g12170	chr2:004891109	0.0	C/4891109-4891191,4890876-4890944,4890434-4890504,4890192-4890316	AT2G12170.1  CDS  gene_syn F23M2.37  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 18 Blast hits to 18 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G12170.1p  transcript_id AT2G12170.1  protein_id AT2G12170.1p  transcript_id AT2G12170.1  
At2g12190	chr2:004891807	0.0	C/4891807-4893345	AT2G12190.1  CDS  gene_syn F23M2.31, F23M2_31  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product cytochrome P450, putative  note cytochrome P450, putative; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; EXPRESSED IN: stem, leaf whorl, male gametophyte, flower, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP89A5; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G64950.1); Has 23462 Blast hits to 23368 proteins in 1258 species: Archae - 21; Bacteria - 2120; Metazoa - 10271; Fungi - 4412; Plants - 5634; Viruses - 3; Other Eukaryotes - 1001 (source: NCBI BLink).  protein_id AT2G12190.1p  transcript_id AT2G12190.1  protein_id AT2G12190.1p  transcript_id AT2G12190.1  
At2g12195	chr2:004894628	0.0	C/4894628-4898737	AT2G12195.1  mRNA_TE_gene  pseudo  gene_syn T10J7.17  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 7.1e-45 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)  
At2g12200	chr2:004900651	0.0	W/4900651-4900815,4900918-4900944	AT2G12200.1  CDS  gene_syn T10J7.18, T10J7_18  go_process folic acid and derivative biosynthetic process|GO:0009396||IEA  go_function formate-tetrahydrofolate ligase activity|GO:0004329||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process biosynthetic process|GO:0009058||ISS  go_function ligase activity|GO:0016874||ISS  product ligase, putative  note ligase, putative; FUNCTIONS IN: formate-tetrahydrofolate ligase activity, ligase activity, ATP binding; INVOLVED IN: biosynthetic process, folic acid and derivative biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Formate-tetrahydrofolate ligase, FTHFS (InterPro:IPR000559); BEST Arabidopsis thaliana protein match is: ligase, putative (TAIR:AT2G12280.1); Has 2574 Blast hits to 2574 proteins in 615 species: Archae - 19; Bacteria - 1103; Metazoa - 178; Fungi - 117; Plants - 28; Viruses - 0; Other Eukaryotes - 1129 (source: NCBI BLink).  protein_id AT2G12200.1p  transcript_id AT2G12200.1  protein_id AT2G12200.1p  transcript_id AT2G12200.1  
At2g12210	chr2:004902163	0.0	W/4902163-4908827	AT2G12210.1  mRNA_TE_gene  pseudo  gene_syn T10J7.19, T10J7_19  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 0. P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At2g12230	chr2:004909261	0.0	W/4909261-4909488	AT2G12230.1  pseudogenic_transcript  pseudo  gene_syn T10J7.21, T10J7_21  note pseudogene, C-1-tetrahydrofolate synthase, blastp match of 91% identity and 2.9e-07 P-value to GP|9843502|emb|CAC03667.1||AL133260 dJ292B18.2 (novel protein similar to methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase (MTHFD1) (EC 1.5.1.5, EC 3.5.4.9, EC-TRUNCATED-  
At2g12240	chr2:004911109	0.0	C/4911109-4912425	AT2G12240.1  mRNA_TE_gene  pseudo  gene_syn T10J7.22, T10J7_22  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 6.6e-45 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At2g12250	chr2:004913282	0.0	C/4913282-4914238	AT2G12250.1  mRNA_TE_gene  pseudo  gene_syn T10J7.23, T10J7_23  function similarity to En/Spm-like transposon protein  note Transposable element gene, pseudogene, expressed protein  
At2g12260	chr2:004914735	0.0	C/4914735-4918581	AT2G12260.1  mRNA_TE_gene  pseudo  gene_syn T10J7.24  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 4.9e-150 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At2g12270	chr2:004919062	0.0	C/4919062-4920410	AT2G12270.1  mRNA_TE_gene  pseudo  gene_syn T10J7.25  note Transposable element gene, pseudogene, similar to putative reverse transcriptase, blastp match of 27% identity and 6.7e-40 P-value to GP|21686921|gb|AAK71569.2|AC087852_29|AC087852 putative reverse transcriptase {Oryza sativa (japonica cultivar-group)}  
At2g12280	chr2:004922324	0.0	W/4922324-4922596	AT2G12280.1  CDS  gene_syn T10J7.26, T10J7_26  go_process folic acid and derivative biosynthetic process|GO:0009396||IEA  go_function formate-tetrahydrofolate ligase activity|GO:0004329||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process biosynthetic process|GO:0009058||ISS  go_function ligase activity|GO:0016874||ISS  product ligase, putative  note ligase, putative; FUNCTIONS IN: formate-tetrahydrofolate ligase activity, ligase activity, ATP binding; INVOLVED IN: biosynthetic process, folic acid and derivative biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Formate-tetrahydrofolate ligase, FTHFS (InterPro:IPR000559); BEST Arabidopsis thaliana protein match is: THFS (10-FORMYLTETRAHYDROFOLATE SYNTHETASE); ATP binding / copper ion binding / formate-tetrahydrofolate ligase (TAIR:AT1G50480.1); Has 2716 Blast hits to 2715 proteins in 658 species: Archae - 22; Bacteria - 1193; Metazoa - 179; Fungi - 117; Plants - 28; Viruses - 0; Other Eukaryotes - 1177 (source: NCBI BLink).  protein_id AT2G12280.1p  transcript_id AT2G12280.1  protein_id AT2G12280.1p  transcript_id AT2G12280.1  
At2g12290	chr2:004924100	0.0	C/4924100-4924501	AT2G12290.1  CDS  gene_syn T10J7.27, T10J7_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: RING; protein binding / zinc ion binding (TAIR:AT4G19700.1); Has 39 Blast hits to 39 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G12290.1p  transcript_id AT2G12290.1  protein_id AT2G12290.1p  transcript_id AT2G12290.1  
At2g12300	chr2:004926146	0.0	C/4926146-4928532	AT2G12300.1  mRNA_TE_gene  pseudo  gene_syn T10J7.28, T10J7_28  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 3.8e-41 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At2g12305	chr2:004929612	0.0	C/4929612-4933406	AT2G12305.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 3.7e-143 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At2g12320	chr2:004935626	0.0	W/4935626-4936286	AT2G12320.1  mRNA_TE_gene  pseudo  gene_syn T10J7.30, T10J7_30  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32169.1)  
At2g12325	chr2:004946235	0.0	W/4946235-4946952	AT2G12325.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 4.9e-16 P-value blast match to GB:BAA11674 ORF(AA 1-1338) (Ty1_Copia-element) (Nicotiana tabacum)  
At2g12330	chr2:004950517	0.0	W/4950517-4955797	AT2G12330.1  mRNA_TE_gene  pseudo  gene_syn F24C20.1  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.1e-219 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g12340	chr2:004967128	0.0	C/4967128-4972105	AT2G12340.1  mRNA_TE_gene  pseudo  gene_syn F24C20.2  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.6e-31 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At2g12345	chr2:004973325	0.0	C/4973325-4973834	AT2G12345.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07493.1)  
At2g12360	chr2:004974482	0.0	C/4974482-4977426	AT2G12360.1  mRNA_TE_gene  pseudo  gene_syn F24C20.4  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.6e-167 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g12370	chr2:004978987	0.0	W/4978987-4985061	AT2G12370.1  mRNA_TE_gene  pseudo  gene_syn F24C20.5  note Transposable element gene, gypsy-like retrotransposon family, has a 9.3e-204 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At2g12380	chr2:004986187	0.0	C/4986187-4989358	AT2G12380.1  mRNA_TE_gene  pseudo  gene_syn F24C20.6  note Transposable element gene, pseudogene, myosin-related protein, similar to GB:AAC28203  
At2g12385	chr2:004991988	0.0	C/4991988-4995221	AT2G12385.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g12390	chr2:004997453	0.0	W/4997453-5001918	AT2G12390.1  mRNA_TE_gene  pseudo  gene_syn F24C20.7, F24C20_7  note Transposable element gene, CACTA-like transposase family (Tnp1/En/Spm), has a 1.5e-186 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)  
At2g12400	chr2:005008044	0.0	C/5008044-5008140,5007768-5007961,5006779-5006960,5006417-5006701,5006277-5006335,5006168-5006204,5006011-5006082,5005599-5005923,5005144-5005518	AT2G12400.1  CDS  gene_syn F24C20.8, F24C20_8  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25270.1); Has 92 Blast hits to 88 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT2G12400.1p  transcript_id AT2G12400.1  protein_id AT2G12400.1p  transcript_id AT2G12400.1  
At2g12405	chr2:005011342	0.0	C/5011342-5011590,5010792-5010893	AT2G12405.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G12405.1p  transcript_id AT2G12405.1  protein_id AT2G12405.1p  transcript_id AT2G12405.1  
At2g12407	chr2:005011953	0.0	W/5011953-5012751	AT2G12407.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 6.7e-15 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At2g12408	chr2:005017110	0.0	W/5017110-5017865	AT2G12408.1  pseudogenic_transcript  pseudo  function pseudogene of zinc knuckle (CCHC-type) family protein  
At2g12410	chr2:005024030	0.0	C/5024030-5026208	AT2G12410.1  mRNA_TE_gene  pseudo  gene_syn F24C20.9  note Transposable element gene, copia-like retrotransposon family, has a 5.0e-99 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At2g12420	chr2:005027376	0.0	C/5027376-5029321	AT2G12420.1  mRNA_TE_gene  pseudo  gene_syn F24C20.10, F24C20_10  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 3.9e-19 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At2g12430	chr2:005031469	0.0	C/5031469-5032435	AT2G12430.1  mRNA_TE_gene  pseudo  gene_syn F24C20.11  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 4.6e-33 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays)  
At2g12440	chr2:005033540	0.0	W/5033540-5040002	AT2G12440.1  mRNA_TE_gene  pseudo  gene_syn T27D6.1  note Transposable element gene, pseudogene, similar to putative reverse transcriptase, blastp match of 29% identity and 8.8e-79 P-value to GP|27311287|gb|AAO00713.1||AC078894 putative reverse transcriptase {Oryza sativa (japonica cultivar-group)}  
At2g12450	chr2:005041585	0.0	W/5041585-5044933	AT2G12450.1  mRNA_TE_gene  pseudo  gene_syn T27D6.2  note Transposable element gene, gypsy-like retrotransposon family, has a 1.7e-96 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays)  
At2g12460	chr2:005045952	0.0	C/5045952-5047581	AT2G12460.1  mRNA_TE_gene  pseudo  gene_syn T27D6.3  note Transposable element gene, expressed protein, similar to GB:AAC28203  
At2g12461	chr2:005049953	0.0	C/5049953-5050087	AT2G12461.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G12461.1p  transcript_id AT2G12461.1  protein_id AT2G12461.1p  transcript_id AT2G12461.1  
At2g12462	chr2:005051207	0.0	C/5051207-5051585,5050583-5050953	AT2G12462.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15760.1); Has 28 Blast hits to 28 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G12462.1p  transcript_id AT2G12462.1  protein_id AT2G12462.1p  transcript_id AT2G12462.1  
At2g12465	chr2:005055785	0.0	C/5055785-5055872,5055525-5055688	AT2G12465.1  CDS  gene_syn LCR50, Low-molecular-weight cysteine-rich 50  gene LCR50  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR50 (Low-molecular-weight cysteine-rich 50)  note Low-molecular-weight cysteine-rich 50 (LCR50); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42232.1); Has 23 Blast hits to 23 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G12465.1p  transcript_id AT2G12465.1  protein_id AT2G12465.1p  transcript_id AT2G12465.1  
At2g12470	chr2:005062615	0.0	C/5062615-5067132	AT2G12470.1  mRNA_TE_gene  pseudo  gene_syn T27D6.4  note Transposable element gene, copia-like retrotransposon family, has a 5.1e-277 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At2g12475	chr2:005068766	0.0	C/5068766-5068853,5068490-5068659	AT2G12475.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: LCR50 (Low-molecular-weight cysteine-rich 50) (TAIR:AT2G12465.1); Has 16 Blast hits to 16 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G12475.1p  transcript_id AT2G12475.1  protein_id AT2G12475.1p  transcript_id AT2G12475.1  
At2g12480	chr2:005071981	0.0	C/5071981-5072227,5071788-5071895,5071608-5071700,5071439-5071531,5071218-5071303,5070626-5070886,5070423-5070478,5070238-5070330,5070047-5070167,5069795-5069968	AT2G12480.2  CDS  gene_syn SCPL43, SERINE CARBOXYPEPTIDASE-LIKE 43, T27D6.5, T27D6_5  gene SCPL43  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product serine carboxypeptidase S10 family protein  note SERINE CARBOXYPEPTIDASE-LIKE 43 (SCPL43); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl42 (serine carboxypeptidase-like 42); serine-type carboxypeptidase (TAIR:AT5G42240.1); Has 2480 Blast hits to 2381 proteins in 275 species: Archae - 0; Bacteria - 134; Metazoa - 599; Fungi - 562; Plants - 887; Viruses - 0; Other Eukaryotes - 298 (source: NCBI BLink).  protein_id AT2G12480.2p  transcript_id AT2G12480.2  protein_id AT2G12480.2p  transcript_id AT2G12480.2  
At2g12480	chr2:005071981	0.0	C/5071981-5072227,5071788-5071895,5071608-5071700,5071439-5071531,5071218-5071303,5070626-5070886,5070423-5070478,5070238-5070330,5070050-5070167,5069795-5069968	AT2G12480.1  CDS  gene_syn SCPL43, SERINE CARBOXYPEPTIDASE-LIKE 43, T27D6.5, T27D6_5  gene SCPL43  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product serine carboxypeptidase S10 family protein  note SERINE CARBOXYPEPTIDASE-LIKE 43 (SCPL43); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl42 (serine carboxypeptidase-like 42); serine-type carboxypeptidase (TAIR:AT5G42240.1); Has 2485 Blast hits to 2385 proteins in 275 species: Archae - 0; Bacteria - 134; Metazoa - 602; Fungi - 560; Plants - 889; Viruses - 0; Other Eukaryotes - 300 (source: NCBI BLink).  protein_id AT2G12480.1p  transcript_id AT2G12480.1  protein_id AT2G12480.1p  transcript_id AT2G12480.1  
At2g12490	chr2:005074384	0.0	W/5074384-5079646	AT2G12490.1  mRNA_TE_gene  pseudo  gene_syn T27D6.6  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At2g12500	chr2:005086784	0.0	W/5086784-5092433	AT2G12500.1  mRNA_TE_gene  pseudo  gene_syn T27D6.7  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 6.8e-208 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g12505	chr2:005096038	0.0	W/5096038-5097359	AT2G12505.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G47230.1)  
At2g12510	chr2:005100105	0.0	W/5100105-5103592	AT2G12510.1  mRNA_TE_gene  pseudo  gene_syn T27D6.8  note Transposable element gene, gypsy-like retrotransposon family, has a 2.8e-206 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At2g12520	chr2:005104418	0.0	C/5104418-5105816	AT2G12520.1  mRNA_TE_gene  pseudo  gene_syn T27D6.9, T27D6_9  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G04070.1); similar to hypothetical protein 26.t00052 [Brassica oleracea] (GB:ABD65035.1); contains InterPro domain Protein of unknown function DUF1633; (InterPro:IPR012436)  
At2g12530	chr2:005106678	0.0	C/5106678-5106974	AT2G12530.1  mRNA_TE_gene  pseudo  gene_syn T27D6.10  note Transposable element gene, pseudogene, hypothetical protein  
At2g12540	chr2:005108873	0.0	C/5108873-5110827	AT2G12540.1  mRNA_TE_gene  pseudo  gene_syn T27D6.11  note Transposable element gene, pseudogene, hypothetical protein  
At2g12550	chr2:005114881	0.0	W/5114881-5115176,5116231-5116353,5116441-5116537,5116628-5116663,5116760-5116947,5117047-5117149,5117237-5117418,5117492-5117569,5117813-5118009,5118098-5118486	AT2G12550.1  CDS  gene_syn T27D6.12, T27D6_12  go_process protein modification process|GO:0006464||IEA  product ubiquitin-associated (UBA)/TS-N domain-containing protein  note ubiquitin-associated (UBA)/TS-N domain-containing protein; INVOLVED IN: protein modification process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin (InterPro:IPR000626), UBA-like (InterPro:IPR009060); Has 274 Blast hits to 274 proteins in 64 species: Archae - 0; Bacteria - 8; Metazoa - 191; Fungi - 2; Plants - 23; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT2G12550.1p  transcript_id AT2G12550.1  protein_id AT2G12550.1p  transcript_id AT2G12550.1  
At2g12557	chr2:005121892	0.0	W/5121892-5122068	AT2G12557.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G12557.1p  transcript_id AT2G12557.1  protein_id AT2G12557.1p  transcript_id AT2G12557.1  
At2g12560	chr2:005122720	0.0	W/5122720-5123487	AT2G12560.1  mRNA_TE_gene  pseudo  gene_syn T4E5.2, T4E5_2  note Transposable element gene, pseudogene, similar to putative reverse transcriptase, blastp match of 31% identity and 7.0e-21 P-value to GP|27311287|gb|AAO00713.1||AC078894 putative reverse transcriptase {Oryza sativa (japonica cultivar-group)}  
At2g12570	chr2:005127430	0.0	C/5127430-5130440	AT2G12570.1  mRNA_TE_gene  pseudo  gene_syn T4E5.3  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.7e-216 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g12580	chr2:005132376	0.0	W/5132376-5133590	AT2G12580.1  mRNA_TE_gene  pseudo  gene_syn T4E5.4  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 7.0e-11 P-value blast match to GB:NP_038604 L1 repeat, Tf subfamily, member 26 (LINE-element) (Mus musculus)  
At2g12590	chr2:005135799	0.0	W/5135799-5138142	AT2G12590.1  mRNA_TE_gene  pseudo  gene_syn T4E5.5  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.3e-170 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g12600	chr2:005139768	0.0	W/5139768-5140704	AT2G12600.1  mRNA_TE_gene  pseudo  gene_syn T4E5.6  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 6.7e-43 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At2g12610	chr2:005141837	0.0	W/5141837-5143529	AT2G12610.1  mRNA_TE_gene  pseudo  gene_syn T4E5.7, T4E5_7  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42120.1)  
At2g12620	chr2:005145949	0.0	W/5145949-5146475	AT2G12620.1  mRNA_TE_gene  pseudo  gene_syn T4E5.8  note Transposable element gene, gypsy-like retrotransposon family, has a 9.1e-10 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays)  
At2g12630	chr2:005148263	0.0	W/5148263-5148767	AT2G12630.1  mRNA_TE_gene  pseudo  gene_syn T4E5.9  note Transposable element gene, pseudogene, hypothetical protein  
At2g12640	chr2:005154645	0.0	C/5154645-5158744	AT2G12640.1  mRNA_TE_gene  pseudo  gene_syn T4E5.10  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 3.7e-25 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)  
At2g12646	chr2:005169020	0.0	C/5169020-5169022,5168542-5168787,5168320-5168460,5167179-5167559	AT2G12646.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734); BEST Arabidopsis thaliana protein match is: zinc-binding protein, putative (TAIR:AT3G60670.1); Has 191 Blast hits to 191 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 191; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G12646.1p  transcript_id AT2G12646.1  protein_id AT2G12646.1p  transcript_id AT2G12646.1  
At2g12650	chr2:005172044	0.0	W/5172044-5177532	AT2G12650.1  mRNA_TE_gene  pseudo  gene_syn F10C8.11  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 4.3e-38 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)  
At2g12660	chr2:005181465	0.0	C/5181465-5182059	AT2G12660.1  pseudogenic_transcript  pseudo  gene_syn F10C8.10  note pseudogene, xyloglucan endotransglycosylase, blastp match of 82% identity and 5.9e-44 P-value to GP|19911573|dbj|BAB86890.1||AB083025 syringolide-induced protein 19-1-5 {Glycine max}  
At2g12670	chr2:005182756	0.0	W/5182756-5185602	AT2G12670.1  mRNA_TE_gene  pseudo  gene_syn F10C8.9  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.9e-29 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)  
At2g12680	chr2:005191775	0.0	W/5191775-5195786	AT2G12680.1  mRNA_TE_gene  pseudo  gene_syn F10C8.8  note Transposable element gene, pseudogene, hypothetical protein  
At2g12685	chr2:005196413	0.0	W/5196413-5196814	AT2G12685.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30610.1)  
At2g12690	chr2:005197316	0.0	C/5197316-5197850	AT2G12690.1  mRNA_TE_gene  pseudo  gene_syn F10C8.7  note Transposable element gene, pseudogene, hypothetical protein  
At2g12695	chr2:005206231	0.0	W/5206231-5206942	AT2G12695.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G24915.1); similar to GRF zinc finger containing protein [Brassica oleracea] (GB:ABD64950.1)  
At2g12700	chr2:005207252	0.0	C/5207252-5207801	AT2G12700.1  mRNA_TE_gene  pseudo  gene_syn F10C8.6, F10C8_6  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G24910.1)  
At2g12710	chr2:005208465	0.0	W/5208465-5209479	AT2G12710.1  mRNA_TE_gene  pseudo  gene_syn F10C8.5  note Transposable element gene, pseudogene, hypothetical protein  
At2g12720	chr2:005210093	0.0	C/5210093-5212892	AT2G12720.1  mRNA_TE_gene  pseudo  gene_syn F10C8.4, F10C8_4  note Transposable element gene, Mutator-like transposase family, has a 7.6e-66 P-value blast match to O22273 /233-373 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g12730	chr2:005218464	0.0	C/5218464-5220468	AT2G12730.1  mRNA_TE_gene  pseudo  gene_syn F10C8.3  note Transposable element gene, Mutator-like transposase family, has a 7.8e-23 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At2g12740	chr2:005221309	0.0	C/5221309-5225867	AT2G12740.1  mRNA_TE_gene  pseudo  gene_syn F10C8.2, F10C8_2  note Transposable element gene, gypsy-like retrotransposon family, has a 1.1e-106 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At2g12750	chr2:005228220	0.0	C/5228220-5230996	AT2G12750.1  mRNA_TE_gene  pseudo  gene_syn F10C8.1, F10C8_1  note Transposable element gene, gypsy-like retrotransposon family, has a 1.5e-93 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus)  
At2g12760	chr2:005233301	0.0	C/5233301-5238002	AT2G12760.1  mRNA_TE_gene  pseudo  gene_syn T18E17.16  note Transposable element gene, gypsy-like retrotransposon family, has a 5.3e-303 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At2g12770	chr2:005239769	0.0	C/5239769-5245033	AT2G12770.1  mRNA_TE_gene  pseudo  gene_syn T18E17.15  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.9e-24 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At2g12780	chr2:005249235	0.0	W/5249235-5252051	AT2G12780.1  mRNA_TE_gene  pseudo  gene_syn T18E17.14  note Transposable element gene, gypsy-like retrotransposon family, has a 6.6e-27 P-value blast match to F21I2-2 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)  
At2g12800	chr2:005252105	0.0	W/5252105-5257758	AT2G12800.1  mRNA_TE_gene  pseudo  gene_syn T18E17.12  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 5.0e-230 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g12810	chr2:005258513	0.0	W/5258513-5259805	AT2G12810.1  mRNA_TE_gene  pseudo  gene_syn T18E17.11  note Transposable element gene, pseudogene, hypothetical protein  
At2g12815	chr2:005260740	0.0	W/5260740-5261453	AT2G12815.1  mRNA_TE_gene  pseudo  note Transposable element gene, hypothetical protein  
At2g12820	chr2:005262414	0.0	W/5262414-5264456	AT2G12820.1  mRNA_TE_gene  pseudo  gene_syn T18E17.10  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.0e-41 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At2g12830	chr2:005265284	0.0	W/5265284-5266740	AT2G12830.1  mRNA_TE_gene  pseudo  gene_syn T18E17.9  note Transposable element gene, pseudogene, hypothetical protein  
At2g12832	chr2:005267412	0.0	W/5267412-5268167	AT2G12832.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g12835	chr2:005269180	0.0	W/5269180-5271288	AT2G12835.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.3e-41 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At2g12840	chr2:005272006	0.0	W/5272006-5273463	AT2G12840.1  mRNA_TE_gene  pseudo  gene_syn T18E17.8  note Transposable element gene, pseudogene, hypothetical protein  
At2g12845	chr2:005274327	0.0	W/5274327-5274890	AT2G12845.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g12850	chr2:005275903	0.0	W/5275903-5278679	AT2G12850.1  mRNA_TE_gene  pseudo  gene_syn T18E17.7  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.2e-40 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At2g12855	chr2:005279891	0.0	W/5279891-5280526	AT2G12855.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.4e-13 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At2g12860	chr2:005280411	0.0	C/5280411-5282901	AT2G12860.1  mRNA_TE_gene  pseudo  gene_syn T18E17.6  note Transposable element gene, gypsy-like retrotransposon family, has a 5.8e-102 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At2g12870	chr2:005286774	0.0	C/5286774-5288838	AT2G12870.1  mRNA_TE_gene  pseudo  gene_syn T18E17.5  note Transposable element gene, gypsy-like retrotransposon family, has a 3.8e-07 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At2g12875	chr2:005291273	0.0	C/5291273-5291470,5290688-5290813,5290499-5290640,5289555-5290002,5289411-5289474	AT2G12875.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 166423 Blast hits to 67741 proteins in 2080 species: Archae - 433; Bacteria - 12469; Metazoa - 75318; Fungi - 17902; Plants - 6638; Viruses - 1042; Other Eukaryotes - 52621 (source: NCBI BLink).  protein_id AT2G12875.1p  transcript_id AT2G12875.1  protein_id AT2G12875.1p  transcript_id AT2G12875.1  
At2g12880	chr2:005291523	0.0	W/5291523-5291882	AT2G12880.1  CDS  gene_syn T18E17.4  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc knuckle (CCHC-type) family protein  note zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, CCHC retroviral-type (InterPro:IPR013084); BEST Arabidopsis thaliana protein match is: zinc knuckle (CCHC-type) family protein (TAIR:AT3G42860.1); Has 1405 Blast hits to 863 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 480; Fungi - 361; Plants - 163; Viruses - 101; Other Eukaryotes - 300 (source: NCBI BLink).  protein_id AT2G12880.1p  transcript_id AT2G12880.1  protein_id AT2G12880.1p  transcript_id AT2G12880.1  
At2g12890	chr2:005292664	0.0	C/5292664-5292917	AT2G12890.1  pseudogenic_transcript  pseudo  gene_syn T18E17.3  note pseudogene, phospho-2-dehydro-3-deoxyheptonate aldolase, blastp match of 35% identity and 4.0e-06 P-value to GP|2546988|emb|CAA75386.1||Y15113 2-dehydro-3-deoxyphosphoheptonate aldolase; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {Morinda citrifolia}  
At2g12900	chr2:005293897	0.0	W/5293897-5294107,5294239-5294392,5294485-5294617,5294716-5294800,5295269-5295480	AT2G12900.1  CDS  gene_syn T18E17.2  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  product DNA binding / transcription factor  note DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: UNE4 (unfertilized embryo sac 4); transcription factor (TAIR:AT2G12940.1); Has 1016 Blast hits to 1007 proteins in 118 species: Archae - 2; Bacteria - 27; Metazoa - 449; Fungi - 25; Plants - 384; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).  protein_id AT2G12900.1p  transcript_id AT2G12900.1  protein_id AT2G12900.1p  transcript_id AT2G12900.1  
At2g12905	chr2:005296364	0.0	W/5296364-5296582	AT2G12905.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G12905.1p  transcript_id AT2G12905.1  protein_id AT2G12905.1p  transcript_id AT2G12905.1  
At2g12910	chr2:005298299	0.0	W/5298299-5301076	AT2G12910.1  mRNA_TE_gene  pseudo  gene_syn T18E17.23  note Transposable element gene, pseudogene, hypothetical protein  
At2g12920	chr2:005302107	0.0	C/5302107-5306293	AT2G12920.1  mRNA_TE_gene  pseudo  gene_syn T18E17.22  note Transposable element gene, gypsy-like retrotransposon family, has a 1.2e-128 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At2g12930	chr2:005306622	0.0	W/5306622-5312751	AT2G12930.1  mRNA_TE_gene  pseudo  gene_syn T18E17.21  note Transposable element gene, gypsy-like retrotransposon family, has a 1.6e-294 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At2g12935	chr2:005315968	0.0	C/5315968-5316041,5315649-5315856,5315255-5315278,5315038-5315175	AT2G12935.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G12935.1p  transcript_id AT2G12935.1  protein_id AT2G12935.1p  transcript_id AT2G12935.1  
At2g12940	chr2:005317513	0.0	W/5317513-5317973,5318140-5318272,5318368-5318452,5318884-5319089	AT2G12940.1  CDS  gene_syn T19K21.9, T19K21_9, UNE4, unfertilized embryo sac 4  gene UNE4  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process double fertilization forming a zygote and endosperm|GO:0009567|15634699|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product UNE4 (unfertilized embryo sac 4); transcription factor  note unfertilized embryo sac 4 (UNE4); FUNCTIONS IN: transcription factor activity; INVOLVED IN: double fertilization forming a zygote and endosperm; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT2G13150.1); Has 656 Blast hits to 656 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 399; Fungi - 13; Plants - 234; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT2G12940.1p  transcript_id AT2G12940.1  protein_id AT2G12940.1p  transcript_id AT2G12940.1  
At2g12945	chr2:005323408	0.0	C/5323408-5323624,5323268-5323327,5322903-5322979	AT2G12945.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G12945.1p  transcript_id AT2G12945.1  protein_id AT2G12945.1p  transcript_id AT2G12945.1  
At2g12950	chr2:005325173	0.0	C/5325173-5327068	AT2G12950.1  mRNA_TE_gene  pseudo  gene_syn T19K21.8  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 2.9e-105 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays)  
At2g12960	chr2:005328294	0.0	W/5328294-5329084	AT2G12960.1  mRNA_TE_gene  pseudo  gene_syn T19K21.7  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 8.1e-29 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g12970	chr2:005331910	0.0	W/5331910-5335773	AT2G12970.1  mRNA_TE_gene  pseudo  gene_syn T19K21.6  note Transposable element gene, gypsy-like retrotransposon family, has a 6.2e-259 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus)  
At2g12977	chr2:005337865	0.0	W/5337865-5338029	AT2G12977.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G12977.1p  transcript_id AT2G12977.1  protein_id AT2G12977.1p  transcript_id AT2G12977.1  
At2g12980	chr2:005338748	0.0	C/5338748-5340868	AT2G12980.1  mRNA_TE_gene  pseudo  gene_syn T19K21.5, T19K21_5  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 6.5e-99 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At2g12990	chr2:005341984	0.0	C/5341984-5342694	AT2G12990.1  mRNA_TE_gene  pseudo  gene_syn T19K21.4, T19K21_4  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 9.4e-25 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)  
At2g13000	chr2:005342940	0.0	C/5342940-5346917	AT2G13000.1  mRNA_TE_gene  pseudo  gene_syn T19K21.3, T19K21_3  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 9.0e-151 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At2g13010	chr2:005352838	0.0	C/5352838-5353735	AT2G13010.1  mRNA_TE_gene  pseudo  gene_syn T19K21.2  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.0e-53 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g13020	chr2:005356304	0.0	C/5356304-5362180	AT2G13020.1  mRNA_TE_gene  pseudo  gene_syn T19K21.1, T19K21_1  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 7.3e-101 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g13040	chr2:005365832	0.0	W/5365832-5367696	AT2G13040.1  mRNA_TE_gene  pseudo  gene_syn T17A11.3  note Transposable element gene, pseudogene, hypothetical protein, similar to GP:4388719  
At2g13050	chr2:005368531	0.0	W/5368531-5371021	AT2G13050.1  mRNA_TE_gene  pseudo  gene_syn T17A11.4  note Transposable element gene, pseudogene, hypothetical protein, similar to GP:3377830  
At2g13060	chr2:005371695	0.0	C/5371695-5377157	AT2G13060.1  mRNA_TE_gene  pseudo  gene_syn T17A11.5  note Transposable element gene, gypsy-like retrotransposon family, has a 7.1e-175 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays)  
At2g13070	chr2:005377427	0.0	W/5377427-5378146	AT2G13070.1  mRNA_TE_gene  pseudo  gene_syn T17A11.6, T17A11_6  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G12520.1); contains InterPro domain Protein of unknown function DUF1633; (InterPro:IPR012436)  
At2g13080	chr2:005378467	0.0	C/5378467-5384531	AT2G13080.1  mRNA_TE_gene  pseudo  gene_syn T17A11.7  note Transposable element gene, gypsy-like retrotransposon family, has a 1.7e-183 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays)  
At2g13090	chr2:005386717	0.0	W/5386717-5389422	AT2G13090.1  mRNA_TE_gene  pseudo  gene_syn T17A11.8  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 7.6e-28 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)  
At2g13100	chr2:005390206	0.0	W/5390206-5390455,5390948-5391151,5391229-5391764	AT2G13100.2  CDS  gene_syn T17A11.9, T17A11_9  go_process carbohydrate transport|GO:0008643||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  product glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative  note glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative; FUNCTIONS IN: sugar:hydrogen symporter activity; INVOLVED IN: carbohydrate transport; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative (TAIR:AT3G47420.1).  protein_id AT2G13100.2p  transcript_id AT2G13100.2  protein_id AT2G13100.2p  transcript_id AT2G13100.2  
At2g13100	chr2:005390206	0.0	W/5390206-5390455,5391014-5391151,5391229-5391764	AT2G13100.3  CDS  gene_syn T17A11.9, T17A11_9  go_process carbohydrate transport|GO:0008643||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  product glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative  note glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative; FUNCTIONS IN: sugar:hydrogen symporter activity; INVOLVED IN: carbohydrate transport; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative (TAIR:AT3G47420.1).  protein_id AT2G13100.3p  transcript_id AT2G13100.3  protein_id AT2G13100.3p  transcript_id AT2G13100.3  
At2g13100	chr2:005390206	0.0	W/5390206-5391151,5391229-5391764	AT2G13100.1  CDS  gene_syn T17A11.9, T17A11_9  go_process carbohydrate transport|GO:0008643||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  product glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative  note glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative; FUNCTIONS IN: sugar:hydrogen symporter activity; INVOLVED IN: carbohydrate transport; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative (TAIR:AT3G47420.1); Has 12133 Blast hits to 12040 proteins in 1151 species: Archae - 186; Bacteria - 9351; Metazoa - 1144; Fungi - 578; Plants - 112; Viruses - 0; Other Eukaryotes - 762 (source: NCBI BLink).  protein_id AT2G13100.1p  transcript_id AT2G13100.1  protein_id AT2G13100.1p  transcript_id AT2G13100.1  
At2g13110	chr2:005396053	0.0	W/5396053-5399160	AT2G13110.1  mRNA_TE_gene  pseudo  gene_syn T17A11.10  note Transposable element gene, copia-like retrotransposon family, has a 1.6e-102 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)  
At2g13115	chr2:005401088	0.0	W/5401088-5403027	AT2G13115.1  pseudogenic_transcript  pseudo  function pseudogene of bZIP family transcription factor  note pseudogene, expressed protein  
At2g13116	chr2:005409925	0.0	C/5409925-5410530	AT2G13116.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At2g13118	chr2:005412450	0.0	C/5412450-5413079	AT2G13118.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 4.3e-08 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At2g13120	chr2:005413237	0.0	C/5413237-5415106	AT2G13120.1  mRNA_TE_gene  pseudo  gene_syn T17A11.11  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 1.1e-109 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota)  
At2g13125	chr2:005415891	0.0	W/5415891-5416020,5416050-5416126,5416150-5416317	AT2G13125.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G13125.1p  transcript_id AT2G13125.1  protein_id AT2G13125.1p  transcript_id AT2G13125.1  
At2g13126	chr2:005416690	0.0	C/5416690-5416872	AT2G13126.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G13126.1p  transcript_id AT2G13126.1  protein_id AT2G13126.1p  transcript_id AT2G13126.1  
At2g13128	chr2:005418240	0.0	C/5418240-5419103	AT2G13128.1  pseudogenic_transcript  pseudo  function pseudogene of F-box family protein  note pseudogene, expressed protein  
At2g13130	chr2:005419675	0.0	C/5419675-5420834	AT2G13130.1  pseudogenic_transcript  pseudo  gene_syn T17A11.12, T17A11_12  note pseudogene, F-box protein family, contains Pfam PF00646: F-box domain; similar to F-box protein family, AtFBX9 (GI:20197985) (Arabidopsis thaliana)  
At2g13140	chr2:005423318	0.0	W/5423318-5425079	AT2G13140.1  mRNA_TE_gene  pseudo  gene_syn T17A11.13  note Transposable element gene, pseudogene, similar to putative reverse transcriptase, blastp match of 37% identity and 2.7e-49 P-value to GP|20279456|gb|AAM18736.1|AC092548_14|AC092548 putative reverse transcriptase {Oryza sativa (japonica cultivar-group)}  
At2g13142	chr2:005425281	0.0	W/5425281-5425845	AT2G13142.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g13143	chr2:005426961	0.0	W/5426961-5427593	AT2G13143.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g13145	chr2:005428731	0.0	W/5428731-5430290	AT2G13145.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At2g13146	chr2:005431033	0.0	W/5431033-5431247	AT2G13146.1  pseudogenic_transcript  pseudo  function Pseudogene of AT2G12905  
At2g13150	chr2:005437056	0.0	W/5437056-5437519,5437639-5437771,5437867-5437951,5438353-5438459	AT2G13150.1  CDS  gene_syn T17A11.14, T17A11_14  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: UNE4 (unfertilized embryo sac 4); transcription factor (TAIR:AT2G12940.1); Has 745 Blast hits to 745 proteins in 91 species: Archae - 3; Bacteria - 5; Metazoa - 259; Fungi - 19; Plants - 402; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT2G13150.1p  transcript_id AT2G13150.1  protein_id AT2G13150.1p  transcript_id AT2G13150.1  
At2g13160	chr2:005441880	0.0	W/5441880-5444055	AT2G13160.1  mRNA_TE_gene  pseudo  gene_syn T17A11.15, T17A11_15  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 1.1e-126 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At2g13170	chr2:005448716	0.0	C/5448716-5452999	AT2G13170.1  mRNA_TE_gene  pseudo  gene_syn F15O11.19  note Transposable element gene, gypsy-like retrotransposon family, has a 2.2e-88 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At2g13175	chr2:005453856	0.0	C/5453856-5456495	AT2G13175.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 1.5e-34 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At2g13180	chr2:005463578	0.0	W/5463578-5464637	AT2G13180.1  mRNA_TE_gene  pseudo  gene_syn F15O11.18  note Transposable element gene, gypsy-like retrotransposon family, has a 5.1e-23 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At2g13190	chr2:005469693	0.0	C/5469693-5470750	AT2G13190.1  mRNA_TE_gene  pseudo  gene_syn F15O11.17  note Transposable element gene, gypsy-like retrotransposon family, has a 3.5e-06 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At2g13200	chr2:005471589	0.0	W/5471589-5473914	AT2G13200.1  mRNA_TE_gene  pseudo  gene_syn F15O11.16  note Transposable element gene, gypsy-like retrotransposon family, has a 1.6e-05 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At2g13230	chr2:005474165	0.0	W/5474165-5477905	AT2G13230.1  mRNA_TE_gene  pseudo  gene_syn F15O11.13, F15O11_13  note Transposable element gene, gypsy-like retrotransposon family, has a 8.2e-157 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At2g13240	chr2:005479272	0.0	W/5479272-5481200	AT2G13240.1  mRNA_TE_gene  pseudo  gene_syn F15O11.12  note Transposable element gene, copia-like retrotransposon family, has a 3.1e-49 P-value blast match to GB:BAA11674 ORF(AA 1-1338) (Ty1_Copia-element) (Nicotiana tabacum)  
At2g13250	chr2:005481569	0.0	C/5481569-5484372	AT2G13250.1  mRNA_TE_gene  pseudo  gene_syn F15O11.11, F15O11_11  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.1e-91 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g13260	chr2:005486415	0.0	C/5486415-5488852	AT2G13260.1  mRNA_TE_gene  pseudo  gene_syn F15O11.10, F15O11_10  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.1e-121 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g13270	chr2:005492653	0.0	W/5492653-5493855	AT2G13270.1  mRNA_TE_gene  pseudo  gene_syn F15O11.9, F15O11_9  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42120.1)  
At2g13272	chr2:005497132	0.0	W/5497132-5497389	AT2G13272.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G13272.1p  transcript_id AT2G13272.1  protein_id AT2G13272.1p  transcript_id AT2G13272.1  
At2g13273	chr2:005498542	0.0	W/5498542-5498667	AT2G13273.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G13273.1p  transcript_id AT2G13273.1  protein_id AT2G13273.1p  transcript_id AT2G13273.1  
At2g13274	chr2:005501010	0.0	W/5501010-5501774	AT2G13274.1  pseudogenic_transcript  pseudo  function Pseudogene of AT2G13150; transcription factor  
At2g13280	chr2:005509322	0.0	C/5509322-5511099	AT2G13280.1  mRNA_TE_gene  pseudo  gene_syn F15O11.8  note Transposable element gene, pseudogene, similar to putative reverse transcriptase, blastp match of 27% identity and 7.6e-27 P-value to GP|20279456|gb|AAM18736.1|AC092548_14|AC092548 putative reverse transcriptase {Oryza sativa (japonica cultivar-group)}  
At2g13290	chr2:005512058	0.0	W/5512058-5513143	AT2G13290.1  CDS  gene_syn F15O11.7, F15O11_7  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process protein amino acid N-linked glycosylation|GO:0006487||IEA  go_process peptidoglycan biosynthetic process|GO:0009252||IEA  go_function acetylglucosaminyltransferase activity|GO:0008375||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyl transferase family 17 protein  note glycosyl transferase family 17 protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: protein amino acid N-linked glycosylation, peptidoglycan biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 17 (InterPro:IPR006813); BEST Arabidopsis thaliana protein match is: glycosyl transferase family 17 protein (TAIR:AT3G27540.1); Has 1045 Blast hits to 1045 proteins in 58 species: Archae - 0; Bacteria - 24; Metazoa - 44; Fungi - 23; Plants - 69; Viruses - 4; Other Eukaryotes - 881 (source: NCBI BLink).  protein_id AT2G13290.1p  transcript_id AT2G13290.1  protein_id AT2G13290.1p  transcript_id AT2G13290.1  
At2g13290	chr2:005512058	0.0	W/5512058-5513143	AT2G13290.2  CDS  gene_syn F15O11.7, F15O11_7  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process protein amino acid N-linked glycosylation|GO:0006487||IEA  go_function acetylglucosaminyltransferase activity|GO:0008375||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyl transferase family 17 protein  note glycosyl transferase family 17 protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: protein amino acid N-linked glycosylation; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 17 (InterPro:IPR006813); BEST Arabidopsis thaliana protein match is: glycosyl transferase family 17 protein (TAIR:AT3G27540.1); Has 1045 Blast hits to 1045 proteins in 58 species: Archae - 0; Bacteria - 24; Metazoa - 44; Fungi - 23; Plants - 69; Viruses - 4; Other Eukaryotes - 881 (source: NCBI BLink).  protein_id AT2G13290.2p  transcript_id AT2G13290.2  protein_id AT2G13290.2p  transcript_id AT2G13290.2  
At2g13295	chr2:005514306	0.0	C/5514306-5514635	AT2G13295.1  CDS  function Encodes a Protease inhibitor/seed storage/LTP family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT1G32280.1); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G13295.1p  transcript_id AT2G13295.1  protein_id AT2G13295.1p  transcript_id AT2G13295.1  
At2g13300	chr2:005517589	0.0	C/5517589-5520081	AT2G13300.1  mRNA_TE_gene  pseudo  gene_syn F15O11.6  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.8e-11 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At2g13310	chr2:005524129	0.0	C/5524129-5526270	AT2G13310.1  mRNA_TE_gene  pseudo  gene_syn F15O11.5, F15O11_5  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 1.3e-123 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At2g13320	chr2:005526469	0.0	W/5526469-5526858	AT2G13320.1  mRNA_TE_gene  pseudo  gene_syn F15O11.4, F15O11_4  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14240.1); similar to hypothetical protein CNBK3420 [Cryptococcus neoformans var. neoformans B-3501A] (GB:EAL17991.1); similar to hypothetical protein CNK00010 [Cryptococcus neoformans var. neoformans JEC21] (GB:XP_567769.1)  
At2g13330	chr2:005528301	0.0	C/5528301-5531548	AT2G13330.1  mRNA_TE_gene  pseudo  gene_syn F15O11.3, F15O11_3  note Transposable element gene, gypsy-like retrotransposon family, has a 2.0e-156 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays)  
At2g13335	chr2:005532043	0.0	C/5532043-5533468	AT2G13335.1  mRNA_TE_gene  pseudo  gene_syn F14O4.1  note Transposable element gene, gypsy-like retrotransposon family, has a 9.7e-06 P-value blast match to GB:BAA84457 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902444|dbj|BAA84457.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At2g13350	chr2:005536525	0.0	C/5536525-5537730	AT2G13350.1  CDS  gene_syn F14O4.8, F14O4_8  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT2G33320.1); Has 184 Blast hits to 176 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 182; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G13350.1p  transcript_id AT2G13350.1  protein_id AT2G13350.1p  transcript_id AT2G13350.1  
At2g13360	chr2:005540413	0.0	C/5540413-5540902,5539963-5540329,5539633-5539843,5539417-5539554	AT2G13360.1  CDS  gene_syn AGT, AGT1, ALANINE:GLYOXYLATE AMINOTRANSFERASE, ALANINE:GLYOXYLATE AMINOTRANSFERASE 1, F14O4.7, F14O4_7  gene AGT  function Encodes a peroxisomal photorespiratory enzyme that catalyzes transamination reactions with multiple substrates. It is involved in photorespiration.  go_component peroxisome|GO:0005777|17951448|IDA  go_component plasma membrane|GO:0005886|14506206|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_component peroxisome|GO:0005777|11309139|IDA  go_process photorespiration|GO:0009853|11309139|NAS  go_function serine-pyruvate transaminase activity|GO:0004760|11309139|IDA  go_function alanine-glyoxylate transaminase activity|GO:0008453|11309139|IDA  go_function serine-glyoxylate transaminase activity|GO:0050281|11309139|IDA  product AGT (ALANINE:GLYOXYLATE AMINOTRANSFERASE); alanine-glyoxylate transaminase/ serine-glyoxylate transaminase/ serine-pyruvate transaminase  note ALANINE:GLYOXYLATE AMINOTRANSFERASE (AGT); FUNCTIONS IN: serine-pyruvate transaminase activity, serine-glyoxylate transaminase activity, alanine-glyoxylate transaminase activity; INVOLVED IN: photorespiration; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase, class V/Cysteine desulfurase (InterPro:IPR000192), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); Has 4507 Blast hits to 4506 proteins in 937 species: Archae - 189; Bacteria - 2245; Metazoa - 163; Fungi - 81; Plants - 108; Viruses - 0; Other Eukaryotes - 1721 (source: NCBI BLink).  protein_id AT2G13360.1p  transcript_id AT2G13360.1  protein_id AT2G13360.1p  transcript_id AT2G13360.1  
At2g13360	chr2:005540413	0.0	C/5540413-5540902,5539963-5540329,5539633-5539843,5539417-5539554	AT2G13360.2  CDS  gene_syn AGT, AGT1, ALANINE:GLYOXYLATE AMINOTRANSFERASE, ALANINE:GLYOXYLATE AMINOTRANSFERASE 1, F14O4.7, F14O4_7  gene AGT  function Encodes a peroxisomal photorespiratory enzyme that catalyzes transamination reactions with multiple substrates. It is involved in photorespiration.  go_component peroxisome|GO:0005777|17951448|IDA  go_component plasma membrane|GO:0005886|14506206|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_component peroxisome|GO:0005777|11309139|IDA  go_process photorespiration|GO:0009853|11309139|NAS  go_function serine-pyruvate transaminase activity|GO:0004760|11309139|IDA  go_function alanine-glyoxylate transaminase activity|GO:0008453|11309139|IDA  go_function serine-glyoxylate transaminase activity|GO:0050281|11309139|IDA  product AGT (ALANINE:GLYOXYLATE AMINOTRANSFERASE); alanine-glyoxylate transaminase/ serine-glyoxylate transaminase/ serine-pyruvate transaminase  note ALANINE:GLYOXYLATE AMINOTRANSFERASE (AGT); FUNCTIONS IN: serine-pyruvate transaminase activity, serine-glyoxylate transaminase activity, alanine-glyoxylate transaminase activity; INVOLVED IN: photorespiration; LOCATED IN: apoplast, peroxisome, plasma membrane, chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase, class V/Cysteine desulfurase (InterPro:IPR000192), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); Has 4507 Blast hits to 4506 proteins in 937 species: Archae - 189; Bacteria - 2245; Metazoa - 163; Fungi - 81; Plants - 108; Viruses - 0; Other Eukaryotes - 1721 (source: NCBI BLink).  protein_id AT2G13360.2p  transcript_id AT2G13360.2  protein_id AT2G13360.2p  transcript_id AT2G13360.2  
At2g13363	chr2:005542340	0.0	W/5542340-5542483	AT2G13363.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G13363.1p  transcript_id AT2G13363.1  protein_id AT2G13363.1p  transcript_id AT2G13363.1  
At2g13370	chr2:005554799	0.0	C/5554799-5555543,5554576-5554643,5553937-5554356,5553339-5553563,5553145-5553228,5552792-5552851,5552560-5552663,5552340-5552391,5551947-5552010,5551433-5551526,5551232-5551319,5550966-5551100,5550497-5550688,5550342-5550409,5549891-5549984,5549669-5549793,5549528-5549591,5549162-5549368,5548339-5548581,5548139-5548249,5547683-5547769,5547424-5547603,5547075-5547155,5546720-5546965,5546321-5546476,5546045-5546222,5545776-5545957,5545324-5545677,5545139-5545232,5544601-5544974	AT2G13370.1  CDS  gene_syn CHR5, F14O4.6, F14O4_6, chromatin remodeling 5  gene CHR5  go_component chromatin|GO:0000785||IEA  go_component nucleus|GO:0005634||IEA  go_process chromatin assembly or disassembly|GO:0006333||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function chromatin binding|GO:0003682||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_process chromatin assembly or disassembly|GO:0006333||ISS  go_function DNA binding|GO:0003677||ISS  go_function chromatin binding|GO:0003682||ISS  go_function helicase activity|GO:0004386||ISS  go_function ATP binding|GO:0005524||ISS  product CHR5 (chromatin remodeling 5); ATP binding / DNA binding / chromatin binding / helicase/ nucleic acid binding  note chromatin remodeling 5 (CHR5); FUNCTIONS IN: chromatin binding, helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: PKL (PICKLE); ATPase/ DNA binding / DNA helicase (TAIR:AT2G25170.1); Has 31004 Blast hits to 21476 proteins in 1460 species: Archae - 103; Bacteria - 6490; Metazoa - 8246; Fungi - 4642; Plants - 1453; Viruses - 424; Other Eukaryotes - 9646 (source: NCBI BLink).  protein_id AT2G13370.1p  transcript_id AT2G13370.1  protein_id AT2G13370.1p  transcript_id AT2G13370.1  
At2g13380	chr2:005560013	0.0	W/5560013-5565080	AT2G13380.1  mRNA_TE_gene  pseudo  gene_syn F14O4.5  note Transposable element gene, gypsy-like retrotransposon family, has a 6.1e-234 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At2g13390	chr2:005566998	0.0	W/5566998-5575786	AT2G13390.1  mRNA_TE_gene  pseudo  gene_syn F14O4.4  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.2e-234 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g13400	chr2:005576997	0.0	W/5576997-5577824	AT2G13400.1  mRNA_TE_gene  pseudo  gene_syn F14O4.3, F14O4_3  note Transposable element gene, pseudogene, expressed protein  
At2g13410	chr2:005579302	0.0	C/5579302-5583150	AT2G13410.1  pseudogenic_transcript  pseudo  gene_syn F14O4.2, F14O4_2  function pseudogene of unknown protein  note expressed protein  
At2g13420	chr2:005586485	0.0	C/5586485-5587562	AT2G13420.1  pseudogenic_transcript  pseudo  gene_syn T26C18.1  note pseudogene, salt-inducible protein, blastp match of 32% identity and 2.2e-39 P-value to GP|13359056|dbj|BAB33278.1||AP003054 P0436D06.17 {Oryza sativa (japonica cultivar-group)}  
At2g13422	chr2:005588218	0.0	W/5588218-5588322	AT2G13422.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G13422.1p  transcript_id AT2G13422.1  protein_id AT2G13422.1p  transcript_id AT2G13422.1  
At2g13430	chr2:005590052	0.0	W/5590052-5590074,5590552-5590805,5591157-5591422	AT2G13430.1  CDS  gene_syn T26C18.2, T26C18_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, inflorescence meristem, leaf; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G13430.1p  transcript_id AT2G13430.1  protein_id AT2G13430.1p  transcript_id AT2G13430.1  
At2g13431	chr2:005590968	0.0	C/5590968-5591289	AT2G13431.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G13430  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G13431.1  
At2g13440	chr2:005598101	0.0	C/5598101-5598296,5597889-5598025,5597722-5597813,5597377-5597490,5596838-5597168,5596468-5596647,5595620-5595700,5595067-5595285,5594755-5594897,5594093-5594259,5593726-5593949,5593545-5593637,5593270-5593464	AT2G13440.1  CDS  gene_syn T26C18.3, T26C18_3  go_component chloroplast|GO:0009507||IEA  go_process tRNA wobble uridine modification|GO:0002098||IEA  go_process tRNA processing|GO:0008033||IEA  go_function FAD binding|GO:0050660||IEA  product glucose-inhibited division family A protein  note glucose-inhibited division family A protein; FUNCTIONS IN: FAD binding; INVOLVED IN: tRNA processing, tRNA wobble uridine modification; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-inhibited division protein A-related (InterPro:IPR002218), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Glucose-inhibited division protein A (InterPro:IPR004416); Has 9779 Blast hits to 9753 proteins in 1440 species: Archae - 2; Bacteria - 3748; Metazoa - 129; Fungi - 83; Plants - 22; Viruses - 0; Other Eukaryotes - 5795 (source: NCBI BLink).  protein_id AT2G13440.1p  transcript_id AT2G13440.1  protein_id AT2G13440.1p  transcript_id AT2G13440.1  
At2g13450	chr2:005598739	0.0	C/5598739-5599923	AT2G13450.1  CDS  gene_syn T26C18.4, T26C18_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02000.1); Has 168 Blast hits to 166 proteins in 8 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 166; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G13450.1p  transcript_id AT2G13450.1  protein_id AT2G13450.1p  transcript_id AT2G13450.1  
At2g13460	chr2:005600306	0.0	C/5600306-5605593	AT2G13460.1  mRNA_TE_gene  pseudo  gene_syn T26C18.5  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 3.0e-35 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At2g13463	chr2:005609987	0.0	C/5609987-5610172	AT2G13463.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G13463.1p  transcript_id AT2G13463.1  protein_id AT2G13463.1p  transcript_id AT2G13463.1  
At2g13469	chr2:005616460	0.0	C/5616460-5617290	AT2G13469.1  pseudogenic_transcript  pseudo  function unknown pseudogene  
At2g13470	chr2:005617571	0.0	C/5617571-5621243	AT2G13470.1  mRNA_TE_gene  pseudo  gene_syn T10F5.1  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 3.6e-14 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)  
At2g13480	chr2:005621671	0.0	C/5621671-5622400	AT2G13480.1  mRNA_TE_gene  pseudo  gene_syn T10F5.2  note Transposable element gene, pseudogene, hypothetical protein, similar to GB:AAA75253  
At2g13490	chr2:005623788	0.0	W/5623788-5627656	AT2G13490.1  mRNA_TE_gene  pseudo  gene_syn T10F5.3  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 3.3e-19 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)  
At2g13500	chr2:005627936	0.0	W/5627936-5628723,5628871-5629099	AT2G13500.1  CDS  gene_syn T10F5.4, T10F5_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: nucleic acid binding / zinc ion binding (TAIR:AT2G17920.1); Has 109 Blast hits to 109 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G13500.1p  transcript_id AT2G13500.1  protein_id AT2G13500.1p  transcript_id AT2G13500.1  
At2g13510	chr2:005630572	0.0	C/5630572-5631107,5630001-5630319	AT2G13510.1  CDS  gene_syn T10F5.5, T10F5_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; EXPRESSED DURING: LP.10 ten leaves visible, LP.02 two leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G13500.1); Has 122 Blast hits to 102 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G13510.1p  transcript_id AT2G13510.1  protein_id AT2G13510.1p  transcript_id AT2G13510.1  
At2g13520	chr2:005631322	0.0	C/5631322-5635386	AT2G13520.1  mRNA_TE_gene  pseudo  gene_syn T10F5.6  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 7.2e-27 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At2g13530	chr2:005635475	0.0	C/5635475-5636530	AT2G13530.1  mRNA_TE_gene  pseudo  gene_syn T10F5.7  note Transposable element gene, pseudogene, hypothetical protein  
At2g13540	chr2:005637053	0.0	W/5637053-5637136,5637221-5637280,5637380-5637436,5637922-5637993,5638102-5638164,5638338-5638514,5638699-5638827,5639051-5639117,5639297-5639496,5639712-5639782,5640245-5640329,5640476-5640544,5640636-5640754,5641062-5641200,5641402-5641902,5641993-5642292,5642377-5642622,5642706-5642813	AT2G13540.1  CDS  gene_syn ABA HYPERSENSITIVE 1, ABH1, ATCBP80, CAP-BINDING PROTEIN 80, CBP80, ENS, ENSALADA, NUCLEAR CAP-BINDING PROTEIN CBP80, T10F5.8, T10F5_8  gene ABH1  function Encodes a nuclear cap-binding protein that forms a heterodimeric complex with CBP20 and is involved in ABA signaling and flowering. Mutants are early flowering and exhibit hypersensitive response to ABA in germination inhibition.Loss of ABH1 function results in abnormal processing of mRNAs for several important floral regulators (FLC, CO, FLM). Analysis of loss of function mutations suggests a role in pri-miRNA processing and mRNA splicing. Note that two different mutant alleles were given the same name abh1-7 (Kuhn et al 2007; Kim et al 2008). To avoid confusion, abh1-7 described in Kim et al (2008) has been renamed abh1-107 (other names: ensalada-1, ens-1).  go_component nucleus|GO:0005634|12427994|IDA  go_process RNA splicing, via endonucleolytic cleavage and ligation|GO:0000394|18550839|IMP  go_process translation|GO:0006412||ISS  go_process response to abscisic acid stimulus|GO:0009737|11525733|IMP  go_process organ morphogenesis|GO:0009887||NAS  go_process primary microRNA processing|GO:0031053|18550839|IMP  go_process long-day photoperiodism, flowering|GO:0048574|17488241|IMP  go_function RNA cap binding|GO:0000339|11525733|IDA  product ABH1 (ABA HYPERSENSITIVE 1); RNA cap binding  note ABA HYPERSENSITIVE 1 (ABH1); FUNCTIONS IN: RNA cap binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MIF4G-like, type 2 (InterPro:IPR015174), MIF4G-like, type 1 (InterPro:IPR015172), Armadillo-type fold (InterPro:IPR016024), MIF4G-like, type 3 (InterPro:IPR003890), MIF4-like, type 1/2/3 (InterPro:IPR016021); Has 301 Blast hits to 299 proteins in 123 species: Archae - 0; Bacteria - 15; Metazoa - 151; Fungi - 82; Plants - 26; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT2G13540.1p  transcript_id AT2G13540.1  protein_id AT2G13540.1p  transcript_id AT2G13540.1  
At2g13542	chr2:005643555	0.0	C/5643555-5643615,5643169-5643338	AT2G13542.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G59833.1); Has 11 Blast hits to 11 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G13542.1p  transcript_id AT2G13542.1  protein_id AT2G13542.1p  transcript_id AT2G13542.1  
At2g13547	chr2:005647172	0.0	W/5647172-5647384	AT2G13547.1  CDS  product unknown protein  note unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G13547.1p  transcript_id AT2G13547.1  protein_id AT2G13547.1p  transcript_id AT2G13547.1  
At2g13550	chr2:005648804	0.0	C/5648804-5649349	AT2G13550.1  CDS  gene_syn T10F5.9, T10F5_9  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 20 Blast hits to 17 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT2G13550.1p  transcript_id AT2G13550.1  protein_id AT2G13550.1p  transcript_id AT2G13550.1  
At2g13560	chr2:005650089	0.0	W/5650089-5650259,5650339-5650435,5650516-5650634,5650744-5650911,5651072-5651200,5651291-5651351,5651783-5651886,5651963-5652046,5652327-5652433,5652689-5652800,5653000-5653113,5653262-5653327,5653576-5653648,5653746-5653832,5653917-5653971,5654079-5654150,5654497-5654559,5654654-5654768,5655029-5655103	AT2G13560.1  CDS  gene_syn T10F5.10, T10F5_10  go_component mitochondrion|GO:0005739|17137349|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739||ISS  go_process malate metabolic process|GO:0006108||ISS  go_function malic enzyme activity|GO:0004470||ISS  go_function oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor|GO:0016652||ISS  product malate oxidoreductase, putative  note malate oxidoreductase, putative; FUNCTIONS IN: oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor, malic enzyme activity, ATP binding; INVOLVED IN: response to salt stress, malate metabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Malic oxidoreductase (InterPro:IPR001891), Malic enzyme, NAD-binding (InterPro:IPR012302), Malic enzyme, conserved site (InterPro:IPR015884), Malic enzyme, N-terminal (InterPro:IPR012301), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: malate oxidoreductase, putative (TAIR:AT4G00570.1); Has 5981 Blast hits to 5971 proteins in 1332 species: Archae - 86; Bacteria - 3249; Metazoa - 553; Fungi - 152; Plants - 269; Viruses - 0; Other Eukaryotes - 1672 (source: NCBI BLink).  protein_id AT2G13560.1p  transcript_id AT2G13560.1  protein_id AT2G13560.1p  transcript_id AT2G13560.1  
At2g13570	chr2:005655842	0.0	C/5655842-5656489	AT2G13570.1  CDS  gene_syn NF-YB7, NUCLEAR FACTOR Y, SUBUNIT B7, T10F5.11, T10F5_11  gene NF-YB7  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YB7 (NUCLEAR FACTOR Y, SUBUNIT B7); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT B7 (NF-YB7); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3); transcription factor (TAIR:AT4G14540.1); Has 1381 Blast hits to 1361 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 479; Fungi - 268; Plants - 295; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).  protein_id AT2G13570.1p  transcript_id AT2G13570.1  protein_id AT2G13570.1p  transcript_id AT2G13570.1  
At2g13580	chr2:005658456	0.0	W/5658456-5659763	AT2G13580.1  pseudogenic_transcript  pseudo  gene_syn T10F5.12, T10F5_12  note pseudogene, similar to OSJNBa0072K14.8, blastp match of 34% identity and 3.7e-06 P-value to GP|21740743|emb|CAD40552.1||AL606621 OSJNBa0072K14.8 {Oryza sativa (japonica cultivar-group)}  
At2g13590	chr2:005667078	0.0	C/5667078-5668393	AT2G13590.1  pseudogenic_transcript  pseudo  gene_syn T10F5.13  note pseudogene, hypothetical protein, similar to GB:AAA75253  
At2g13600	chr2:005671493	0.0	W/5671493-5673586	AT2G13600.1  CDS  gene_syn T10F5.14, T10F5_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 15471 Blast hits to 4950 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 72; Fungi - 40; Plants - 15040; Viruses - 0; Other Eukaryotes - 319 (source: NCBI BLink).  protein_id AT2G13600.1p  transcript_id AT2G13600.1  protein_id AT2G13600.1p  transcript_id AT2G13600.1  
At2g13610	chr2:005673827	0.0	C/5673827-5675776	AT2G13610.1  CDS  gene_syn T10F5.15, T10F5_15  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ABC transporter family protein  note ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 (InterPro:IPR000412), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT1G53270.1); Has 238074 Blast hits to 215293 proteins in 2647 species: Archae - 4329; Bacteria - 162840; Metazoa - 8503; Fungi - 4888; Plants - 2890; Viruses - 17; Other Eukaryotes - 54607 (source: NCBI BLink).  protein_id AT2G13610.1p  transcript_id AT2G13610.1  protein_id AT2G13610.1p  transcript_id AT2G13610.1  
At2g13620	chr2:005678006	0.0	W/5678006-5678218,5678369-5680621	AT2G13620.1  CDS  gene_syn ATCHX15, CATION/H+ EXCHANGER 15, CATION/HYDROGEN EXCHANGER 15, CHX15, T10F5.16, T10F5_16  gene ATCHX15  function member of Putative Na+/H+ antiporter family  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|IC  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product ATCHX15; monovalent cation:proton antiporter/ sodium:hydrogen antiporter  note ATCHX15; FUNCTIONS IN: monovalent cation:proton antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: ATCHX19 (CATION/H+ EXCHANGER 19); monovalent cation:proton antiporter/ sodium:hydrogen antiporter (TAIR:AT3G17630.1); Has 5946 Blast hits to 5925 proteins in 1186 species: Archae - 231; Bacteria - 4415; Metazoa - 53; Fungi - 125; Plants - 306; Viruses - 0; Other Eukaryotes - 816 (source: NCBI BLink).  protein_id AT2G13620.1p  transcript_id AT2G13620.1  protein_id AT2G13620.1p  transcript_id AT2G13620.1  
At2g13623	chr2:005682062	0.0	C/5682062-5682304	AT2G13623.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G13623.1p  transcript_id AT2G13623.1  protein_id AT2G13623.1p  transcript_id AT2G13623.1  
At2g13630	chr2:005684538	0.0	C/5684538-5685431	AT2G13630.1  CDS  gene_syn T10F5.17, T10F5_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G04660.1); Has 324 Blast hits to 320 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 324; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G13630.1p  transcript_id AT2G13630.1  protein_id AT2G13630.1p  transcript_id AT2G13630.1  
At2g13640	chr2:005686136	0.0	C/5686136-5687290	AT2G13640.1  CDS  gene_syn T10F5.18, T10F5_18  go_component nucleus|GO:0005634||IEA  go_process transcription|GO:0006350||IEA  product Golgi GDP mannose transporter (GONST1)  note Golgi GDP mannose transporter (GONST1); INVOLVED IN: transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: TFIIS N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27310.1); Has 1312 Blast hits to 946 proteins in 146 species: Archae - 3; Bacteria - 111; Metazoa - 360; Fungi - 58; Plants - 86; Viruses - 4; Other Eukaryotes - 690 (source: NCBI BLink).  protein_id AT2G13640.1p  transcript_id AT2G13640.1  protein_id AT2G13640.1p  transcript_id AT2G13640.1  
At2g13650	chr2:005689954	0.0	C/5689954-5690303,5689497-5689626,5688891-5688989,5688188-5688342,5687985-5688105	AT2G13650.2  CDS  gene_syn GONST1, Golgi Nucleotide Sugar Transporter 1, T10F5.19, T10F5_19  gene GONST1  function GDP-mannose transporter  go_component Golgi apparatus|GO:0005794|11595802|IDA  go_process GDP-mannose transport|GO:0015784|11595802|IMP  go_function nucleotide-sugar transmembrane transporter activity|GO:0005338|11595802|ISS  go_function nucleotide-sugar transmembrane transporter activity|GO:0005338||ISS  go_function GDP-mannose transmembrane transporter activity|GO:0005458|11595802|IDA  product GONST1 (Golgi Nucleotide Sugar Transporter 1); GDP-mannose transmembrane transporter/ nucleotide-sugar transmembrane transporter  note Golgi Nucleotide Sugar Transporter 1 (GONST1); FUNCTIONS IN: nucleotide-sugar transmembrane transporter activity, GDP-mannose transmembrane transporter activity; INVOLVED IN: GDP-mannose transport; LOCATED IN: Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleotide-sugar transmembrane transporter (TAIR:AT1G07290.1); Has 853 Blast hits to 850 proteins in 161 species: Archae - 0; Bacteria - 3; Metazoa - 312; Fungi - 167; Plants - 284; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).  protein_id AT2G13650.2p  transcript_id AT2G13650.2  protein_id AT2G13650.2p  transcript_id AT2G13650.2  
At2g13650	chr2:005689954	0.0	C/5689954-5690303,5689497-5689626,5688891-5688989,5688188-5688342,5687989-5688105,5687738-5687835,5687584-5687636	AT2G13650.1  CDS  gene_syn GONST1, Golgi Nucleotide Sugar Transporter 1, T10F5.19, T10F5_19  gene GONST1  function GDP-mannose transporter  go_component Golgi apparatus|GO:0005794|11595802|IDA  go_process GDP-mannose transport|GO:0015784|11595802|IMP  go_function nucleotide-sugar transmembrane transporter activity|GO:0005338|11595802|ISS  go_function nucleotide-sugar transmembrane transporter activity|GO:0005338||ISS  go_function GDP-mannose transmembrane transporter activity|GO:0005458|11595802|IDA  product GONST1 (Golgi Nucleotide Sugar Transporter 1); GDP-mannose transmembrane transporter/ nucleotide-sugar transmembrane transporter  note Golgi Nucleotide Sugar Transporter 1 (GONST1); FUNCTIONS IN: nucleotide-sugar transmembrane transporter activity, GDP-mannose transmembrane transporter activity; INVOLVED IN: GDP-mannose transport; LOCATED IN: Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleotide-sugar transmembrane transporter (TAIR:AT1G07290.1); Has 1101 Blast hits to 1101 proteins in 176 species: Archae - 2; Bacteria - 5; Metazoa - 368; Fungi - 192; Plants - 414; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).  protein_id AT2G13650.1p  transcript_id AT2G13650.1  protein_id AT2G13650.1p  transcript_id AT2G13650.1  
At2g13665	chr2:005692148	0.0	W/5692148-5693006	AT2G13665.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G13660  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G13665.2  
At2g13665	chr2:005692156	0.0	W/5692156-5693016	AT2G13665.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G13660  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G13665.1  
At2g13660	chr2:005692682	0.0	C/5692682-5692889,5692292-5692617	AT2G13660.1  CDS  gene_syn T10F5.25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G13660.1p  transcript_id AT2G13660.1  protein_id AT2G13660.1p  transcript_id AT2G13660.1  
At2g13680	chr2:005695124	0.0	W/5695124-5695316,5695419-5695519,5695884-5696005,5696150-5696246,5696358-5696468,5696567-5696695,5696795-5696887,5697214-5697305,5697404-5697530,5697623-5697760,5697843-5697919,5698008-5698086,5698170-5698295,5698379-5698493,5698606-5698940,5699241-5699293,5699403-5699463,5699553-5699634,5699730-5699779,5699860-5699946,5700355-5700477,5700565-5700659,5700737-5700821,5700892-5701052,5701411-5701534,5701717-5701811,5701907-5702024,5702100-5702251,5702518-5702627,5702711-5702836,5702913-5702981,5703197-5703386,5703467-5703578,5703677-5703796,5703896-5704011,5704112-5704195,5704331-5704443,5704531-5704760,5704854-5706134	AT2G13680.1  CDS  gene_syn ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, ATGSL02, CALLOSE SYNTHASE 5, CALS5, GLS2, GLUCAN SYNTHASE-LIKE 2  gene CALS5  function Responsible for the synthesis of callose deposited at the primary cell wall of meiocytes, tetrads and microspores. Required for exine formation during microgametogenesis and for pollen viability. Highest expression in meiocytes, tetrads, microspores and mature pollen.  go_component 1,3-beta-glucan synthase complex|GO:0000148||IEA  go_component membrane|GO:0016020||IEA  go_function 1,3-beta-glucan synthase activity|GO:0003843||IEA  go_component 1,3-beta-glucan synthase complex|GO:0000148||ISS  go_process 1,3-beta-glucan biosynthetic process|GO:0006075|15842618|IMP  go_process 1,3-beta-glucan biosynthetic process|GO:0006075||ISS  go_process microsporogenesis|GO:0009556|15842618|IDA  go_process microsporogenesis|GO:0009556|15842618|IMP  go_process pollen tube growth|GO:0009860|15842618|IDA  go_process pollen wall assembly|GO:0010208|15842618|IMP  go_function 1,3-beta-glucan synthase activity|GO:0003843||ISS  product CALS5 (CALLOSE SYNTHASE 5); 1,3-beta-glucan synthase  note CALLOSE SYNTHASE 5 (CALS5); FUNCTIONS IN: 1,3-beta-glucan synthase activity; INVOLVED IN: pollen wall assembly, pollen tube growth, microsporogenesis, 1,3-beta-glucan biosynthetic process; LOCATED IN: 1,3-beta-glucan synthase complex, membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 48 (InterPro:IPR003440); BEST Arabidopsis thaliana protein match is: CALS1 (CALLOSE SYNTHASE 1); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups (TAIR:AT1G05570.1); Has 850 Blast hits to 616 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 540; Plants - 279; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT2G13680.1p  transcript_id AT2G13680.1  protein_id AT2G13680.1p  transcript_id AT2G13680.1  
At2g13690	chr2:005708176	0.0	C/5708176-5708895,5706704-5707618	AT2G13690.1  CDS  gene_syn T10F5.21  go_process biological_process|GO:0008150||ND  go_function transcription regulator activity|GO:0030528||ISS  product PRLI-interacting factor, putative  note PRLI-interacting factor, putative; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PRLI-interacting factor-related (TAIR:AT1G63850.1); Has 153 Blast hits to 153 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G13690.1p  transcript_id AT2G13690.1  protein_id AT2G13690.1p  transcript_id AT2G13690.1  
At2g13700	chr2:005709857	0.0	C/5709857-5713067	AT2G13700.1  mRNA_TE_gene  pseudo  gene_syn T10F5.20  note Transposable element gene, copia-like retrotransposon family, has a 1.5e-117 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At2g13705	chr2:005714374	0.0	C/5714374-5714766	AT2G13705.1  pseudogenic_transcript  pseudo  note pseudogene, similar to putative DNA topoisomerase I, blastp match of 50% identity and 4.8e-09 P-value to GP|27817923|dbj|BAC55688.1||AP003940 putative DNA topoisomerase I {Oryza sativa (japonica cultivar-group)}  
At2g13706	chr2:005717281	0.0	W/5717281-5717603	AT2G13706.1  pseudogenic_transcript  pseudo  function Pseudogene of AT4G15975; zinc finger (C3HC4-type RING finger) family protein  
At2g13710	chr2:005721707	0.0	C/5721707-5722629	AT2G13710.1  mRNA_TE_gene  pseudo  gene_syn F17L24.2  note Transposable element gene, Mariner-like transposase family, has a 3.3e-55 P-value blast match to GB:AAC28384 mariner transposase (Mariner_TC1-element) (Glycine max)  
At2g13720	chr2:005724039	0.0	W/5724039-5724148,5724463-5724546,5724614-5724714,5724788-5724942,5725027-5725248	AT2G13720.1  CDS  gene_syn F13J11.7, F13J11_7  go_component chromosome|GO:0005694||IEA  go_process DNA topological change|GO:0006265||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA topoisomerase (ATP-hydrolyzing) activity|GO:0003918||IEA  go_function ATP binding|GO:0005524||IEA  product ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)  note ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing); FUNCTIONS IN: DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, ATP binding; INVOLVED IN: DNA topological change; LOCATED IN: chromosome; CONTAINS InterPro DOMAIN/s: DNA topoisomerase, type IIA, central (InterPro:IPR013760); BEST Arabidopsis thaliana protein match is: TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/ DNA-dependent ATPase (TAIR:AT3G23890.2); Has 389 Blast hits to 389 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 150; Plants - 25; Viruses - 12; Other Eukaryotes - 140 (source: NCBI BLink).  protein_id AT2G13720.1p  transcript_id AT2G13720.1  protein_id AT2G13720.1p  transcript_id AT2G13720.1  
At2g13730	chr2:005725557	0.0	C/5725557-5726003	AT2G13730.1  mRNA_TE_gene  pseudo  gene_syn F13J11.8, F13J11_8  note Transposable element gene  
At2g13740	chr2:005727830	0.0	W/5727830-5729269	AT2G13740.1  mRNA_TE_gene  pseudo  gene_syn F17L24.1  note Transposable element gene, pseudogene, hypothetical protein  
At2g13750	chr2:005730067	0.0	W/5730067-5732214	AT2G13750.1  mRNA_TE_gene  pseudo  gene_syn F13J11.10, F13J11_10  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 2.5e-17 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At2g13760	chr2:005735534	0.0	C/5735534-5735644,5734955-5735473	AT2G13760.1  CDS  gene_syn F13J11.11, F13J11_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24380.1); Has 38 Blast hits to 38 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 4; Plants - 16; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT2G13760.1p  transcript_id AT2G13760.1  protein_id AT2G13760.1p  transcript_id AT2G13760.1  
At2g13770	chr2:005736603	0.0	W/5736603-5737215,5737429-5737847	AT2G13770.1  CDS  gene_syn F13J11.12, F13J11_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF635 (InterPro:IPR006912); Has 287 Blast hits to 205 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 8; Plants - 263; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G13770.1p  transcript_id AT2G13770.1  protein_id AT2G13770.1p  transcript_id AT2G13770.1  
At2g13790	chr2:005741979	0.0	W/5741979-5742075,5742195-5742336,5742442-5742513,5743213-5743356,5743977-5744045,5744147-5744218,5744298-5744374,5745134-5745262,5745345-5745686,5745773-5746167,5746258-5746581	AT2G13790.1  CDS  gene_syn AT2G13780, ATSERK4, BKK1, F13J11.14, F13J11_14, SERK4, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 4  gene SERK4  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468|11706164|ISS  go_process cell death|GO:0008219|18667726|IGI  go_process response to salt stress|GO:0009651|11351099|IEP  go_process response to chitin|GO:0010200|17722694|IEP  go_function protein kinase activity|GO:0004672||ISS  go_function transmembrane receptor protein serine/threonine kinase activity|GO:0004675|11706164|ISS  go_function protein binding|GO:0005515||ISS  product SERK4 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 4); protein binding / protein kinase/ transmembrane receptor protein serine/threonine kinase  note SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 4 (SERK4); FUNCTIONS IN: protein binding, transmembrane receptor protein serine/threonine kinase activity, protein kinase activity; INVOLVED IN: response to salt stress, cell death, protein amino acid phosphorylation, response to chitin; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: SERK5 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 5); ATP binding / protein kinase/ transmembrane receptor protein serine/threonine kinase (TAIR:AT2G13800.1); Has 116138 Blast hits to 85814 proteins in 3136 species: Archae - 77; Bacteria - 8484; Metazoa - 38223; Fungi - 6084; Plants - 47471; Viruses - 384; Other Eukaryotes - 15415 (source: NCBI BLink).  protein_id AT2G13790.1p  transcript_id AT2G13790.1  protein_id AT2G13790.1p  transcript_id AT2G13790.1  
At2g13800	chr2:005753276	0.0	W/5753276-5753357,5753498-5753639,5753706-5753777,5753934-5754077,5754753-5754821,5754903-5754974,5755053-5755108,5755615-5755722,5755806-5756147,5756257-5756651,5756742-5757065	AT2G13800.1  CDS  gene_syn ATSERK5, F13J11.15, F13J11_15, SERK5, SOMATIC EMBRYOGENESIS RECEPTOR LIKE KINASE 5, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 5  gene SERK5  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468|11706164|ISS  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function transmembrane receptor protein serine/threonine kinase activity|GO:0004675|11706164|ISS  go_function ATP binding|GO:0005524||ISS  product SERK5 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 5); ATP binding / protein kinase/ transmembrane receptor protein serine/threonine kinase  note SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 5 (SERK5); FUNCTIONS IN: transmembrane receptor protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: SERK4 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 4); protein binding / protein kinase/ transmembrane receptor protein serine/threonine kinase (TAIR:AT2G13790.1); Has 107853 Blast hits to 79806 proteins in 3037 species: Archae - 66; Bacteria - 7233; Metazoa - 35494; Fungi - 5424; Plants - 45380; Viruses - 367; Other Eukaryotes - 13889 (source: NCBI BLink).  protein_id AT2G13800.1p  transcript_id AT2G13800.1  protein_id AT2G13800.1p  transcript_id AT2G13800.1  
At2g13810	chr2:005768489	0.0	W/5768489-5768559,5768674-5768699,5768799-5768866,5768958-5769074,5770390-5770452,5770658-5770762,5770841-5770891,5770981-5771301,5771378-5771584,5771797-5772138	AT2G13810.1  CDS  gene_syn AGD2-LIKE DEFENSE RESPONSE PROTEIN1, ALD1, F17L24.14  gene ALD1  go_component chloroplast|GO:0009507||IEA  go_process asparagine catabolic process|GO:0006530||IEA  go_process biosynthetic process|GO:0009058||IEA  go_process aspartate transamidation|GO:0019465||IEA  go_process glutamate catabolic process to oxaloacetate|GO:0019554||IEA  go_function catalytic activity|GO:0003824||IEA  go_function transferase activity, transferring nitrogenous groups|GO:0016769||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_function transaminase activity|GO:0008483||ISS  product ALD1 (AGD2-LIKE DEFENSE RESPONSE PROTEIN1); catalytic/ pyridoxal phosphate binding / transaminase/ transferase, transferring nitrogenous groups  note AGD2-LIKE DEFENSE RESPONSE PROTEIN1 (ALD1); FUNCTIONS IN: transferase activity, transferring nitrogenous groups, pyridoxal phosphate binding, transaminase activity, catalytic activity; INVOLVED IN: asparagine catabolic process, biosynthetic process, glutamate catabolic process to oxaloacetate, aspartate transamidation; LOCATED IN: chloroplast; EXPRESSED IN: sepal, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: AGD2 (ABERRANT GROWTH AND DEATH 2); L,L-diaminopimelate aminotransferase/ transaminase (TAIR:AT4G33680.1); Has 20441 Blast hits to 20441 proteins in 1635 species: Archae - 602; Bacteria - 11982; Metazoa - 322; Fungi - 271; Plants - 337; Viruses - 0; Other Eukaryotes - 6927 (source: NCBI BLink).  protein_id AT2G13810.1p  transcript_id AT2G13810.1  protein_id AT2G13810.1p  transcript_id AT2G13810.1  
At2g13820	chr2:005775961	0.0	C/5775961-5776279,5775805-5775875	AT2G13820.2  CDS  gene_syn F17L24.13, F17L24_13  go_component plasma membrane|GO:0005886|17317660|IDA  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_process lipid transport|GO:0006869||IEA  go_function lipid binding|GO:0008289||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to plasma membrane, plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT5G64080.1); Has 691 Blast hits to 687 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 691; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G13820.2p  transcript_id AT2G13820.2  protein_id AT2G13820.2p  transcript_id AT2G13820.2  
At2g13820	chr2:005775961	0.0	C/5775961-5776279,5775840-5775875,5774295-5774449	AT2G13820.1  CDS  gene_syn F17L24.13, F17L24_13  go_component plasma membrane|GO:0005886|17317660|IDA  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_process lipid transport|GO:0006869||IEA  go_function lipid binding|GO:0008289||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to plasma membrane, plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT5G64080.2); Has 751 Blast hits to 747 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 747; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G13820.1p  transcript_id AT2G13820.1  protein_id AT2G13820.1p  transcript_id AT2G13820.1  
At2g13830	chr2:005782178	0.0	C/5782178-5786746	AT2G13830.1  mRNA_TE_gene  pseudo  gene_syn F17L24.12  note Transposable element gene, gypsy-like retrotransposon family, has a 4.4e-283 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At2g13840	chr2:005790773	0.0	C/5790773-5791057,5790067-5790191,5789658-5789969,5789115-5789284,5788616-5789028	AT2G13840.1  CDS  gene_syn F17L24.11, F17L24_11  go_process DNA replication|GO:0006260||IEA  go_function DNA binding|GO:0003677||IEA  go_function catalytic activity|GO:0003824||IEA  go_function DNA-directed DNA polymerase activity|GO:0003887||IEA  go_component cellular_component|GO:0005575||ND  go_process DNA replication|GO:0006260||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed DNA polymerase activity|GO:0003887||ISS  product PHP domain-containing protein  note PHP domain-containing protein; FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity, catalytic activity; INVOLVED IN: DNA replication; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polymerase and histidinol phosphatase-like (InterPro:IPR016195), Polymerase and histidinol phosphatase, N-terminal (InterPro:IPR003141), PHP, C-terminal (InterPro:IPR004013); Has 2465 Blast hits to 2462 proteins in 792 species: Archae - 81; Bacteria - 1766; Metazoa - 0; Fungi - 2; Plants - 16; Viruses - 0; Other Eukaryotes - 600 (source: NCBI BLink).  protein_id AT2G13840.1p  transcript_id AT2G13840.1  protein_id AT2G13840.1p  transcript_id AT2G13840.1  
At2g13850	chr2:005792926	0.0	C/5792926-5797569	AT2G13850.1  mRNA_TE_gene  pseudo  gene_syn F17L24.10  note Transposable element gene, copia-like retrotransposon family, has a 9.1e-219 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element)  
At2g13851	chr2:005798568	0.0	C/5798568-5799689	AT2G13851.1  pseudogenic_transcript  pseudo  function unknown pseudogene  
At2g13860	chr2:005809672	0.0	C/5809672-5813482	AT2G13860.1  mRNA_TE_gene  pseudo  gene_syn F17L24.9  note Transposable element gene, gypsy-like retrotransposon family, has a 2.4e-275 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At2g13865	chr2:005817230	0.0	W/5817230-5818001	AT2G13865.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52840.1)  
At2g13870	chr2:005819376	0.0	W/5819376-5821584	AT2G13870.1  mRNA_TE_gene  pseudo  gene_syn F17L24.7, F17L24_7  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 1.4e-103 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At2g13890	chr2:005824324	0.0	W/5824324-5827812	AT2G13890.1  mRNA_TE_gene  pseudo  gene_syn F17L24.5, F17L24_5  note Transposable element gene, pseudogene, zinc knuckle (CCHC type) protein family, contains Pfam domain, PF00098: Zinc knuckle  
At2g13895	chr2:005829485	0.0	W/5829485-5829789,5829887-5830283	AT2G13895.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT1G53340.1).  protein_id AT2G13895.1p  transcript_id AT2G13895.1  protein_id AT2G13895.1p  transcript_id AT2G13895.1  
At2g13900	chr2:005833102	0.0	W/5833102-5835087	AT2G13900.1  CDS  gene_syn F17L24.4, F17L24_4  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT5G02350.1); Has 952 Blast hits to 466 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 942; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G13900.1p  transcript_id AT2G13900.1  protein_id AT2G13900.1p  transcript_id AT2G13900.1  
At2g13910	chr2:005837686	0.0	W/5837686-5839920	AT2G13910.1  pseudogenic_transcript  pseudo  gene_syn F17L24.3, F17L24_3  note pseudogene, CHP-rich zinc finger protein, putative  
At2g13920	chr2:005844029	0.0	W/5844029-5845726	AT2G13920.1  pseudogenic_transcript  pseudo  gene_syn F17L24.8  note pseudogene, CHP-rich zinc finger protein, putative, contains weak PHD zinc finger motifs contains weak PHD zinc finger motifs DC1 domain, a divergent protein kinase C domain of unknown function.  
At2g13930	chr2:005846901	0.0	C/5846901-5850953	AT2G13930.1  mRNA_TE_gene  pseudo  gene_syn F9B22.4, F9B22_4  note Transposable element gene, copia-like retrotransposon family, has a 2.8e-77 P-value blast match to reverse transcriptase (Ty1_Copia-element) (Arabidopsis thaliana)  
At2g13940	chr2:005852759	0.0	W/5852759-5857264	AT2G13940.1  mRNA_TE_gene  pseudo  gene_syn F9B22.5, F9B22_5  note Transposable element gene, copia-like retrotransposon family, has a 4.4e-197 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)  
At2g13950	chr2:005857536	0.0	W/5857536-5859020,5859181-5859249	AT2G13950.1  CDS  gene_syn F9B22.6, F9B22_6  go_component nucleus|GO:0005634|14617066|IDA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process response to cold|GO:0009409|14617066|IEP  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: response to cold; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, RanBP2-type (InterPro:IPR001876), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT5G02340.1); Has 963 Blast hits to 476 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 945; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G13950.1p  transcript_id AT2G13950.1  protein_id AT2G13950.1p  transcript_id AT2G13950.1  
At2g13960	chr2:005859683	0.0	W/5859683-5859724,5860096-5860247,5860393-5860444,5860596-5860653,5860957-5861105	AT2G13960.1  CDS  gene_syn F9B22.7, F9B22_7  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB3R-5 (MYB DOMAIN PROTEIN 3R-5); DNA binding / transcription factor (TAIR:AT5G02320.1); Has 2797 Blast hits to 2225 proteins in 219 species: Archae - 0; Bacteria - 0; Metazoa - 744; Fungi - 236; Plants - 697; Viruses - 6; Other Eukaryotes - 1114 (source: NCBI BLink).  protein_id AT2G13960.1p  transcript_id AT2G13960.1  protein_id AT2G13960.1p  transcript_id AT2G13960.1  
At2g13960	chr2:005860304	0.0	W/5860304-5860444,5860596-5860653,5860957-5861105	AT2G13960.2  CDS  gene_syn F9B22.7, F9B22_7  go_component endomembrane system|GO:0012505||IEA  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB3R-5 (MYB DOMAIN PROTEIN 3R-5); DNA binding / transcription factor (TAIR:AT5G02320.1); Has 2789 Blast hits to 2193 proteins in 217 species: Archae - 0; Bacteria - 0; Metazoa - 726; Fungi - 231; Plants - 721; Viruses - 6; Other Eukaryotes - 1105 (source: NCBI BLink).  protein_id AT2G13960.2p  transcript_id AT2G13960.2  protein_id AT2G13960.2p  transcript_id AT2G13960.2  
At2g13970	chr2:005862536	0.0	W/5862536-5864801	AT2G13970.1  mRNA_TE_gene  pseudo  gene_syn F9B22.8, F9B22_8  note Transposable element gene, Mutator-like transposase family, has a 4.1e-39 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At2g13975	chr2:005864892	0.0	C/5864892-5865582	AT2G13975.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G43920.1); similar to GRF zinc finger containing protein [Brassica oleracea] (GB:ABD64950.1)  
At2g13980	chr2:005869853	0.0	C/5869853-5870368	AT2G13980.1  CDS  gene_syn F9B22.9, F9B22_9  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT3G09510.1); Has 180 Blast hits to 180 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 180; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G13980.1p  transcript_id AT2G13980.1  protein_id AT2G13980.1p  transcript_id AT2G13980.1  
At2g13990	chr2:005876701	0.0	C/5876701-5881534	AT2G13990.1  mRNA_TE_gene  pseudo  gene_syn F9B22.10  note Transposable element gene, gypsy-like retrotransposon family, has a 5.6e-297 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At2g14000	chr2:005885455	0.0	C/5885455-5885985,5884600-5885109	AT2G14000.1  CDS  gene_syn F9B22.11, F9B22_11  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G30820.1); Has 19 Blast hits to 15 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G14000.1p  transcript_id AT2G14000.1  protein_id AT2G14000.1p  transcript_id AT2G14000.1  
At2g14010	chr2:005888321	0.0	W/5888321-5893026	AT2G14010.1  mRNA_TE_gene  pseudo  gene_syn F9B22.12, F9B22_12  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G29240.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G26260.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G44890.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At2g14020	chr2:005893787	0.0	C/5893787-5894272	AT2G14020.1  mRNA_TE_gene  pseudo  gene_syn F9B22.13, F9B22_13  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G44880.1)  
At2g14030	chr2:005895268	0.0	C/5895268-5898637	AT2G14030.1  mRNA_TE_gene  pseudo  gene_syn F9B22.14, F9B22_14  note Transposable element gene, Mutator-like transposase family, has a 3.1e-78 P-value blast match to Q9SLM0 /314-478 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g14040	chr2:005900982	0.0	C/5900982-5905041	AT2G14040.1  mRNA_TE_gene  pseudo  gene_syn F9B22.15, F9B22_15  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.0e-99 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At2g14045	chr2:005907133	0.0	W/5907133-5907150,5907253-5907325,5907435-5907483,5907810-5907933,5908050-5908154	AT2G14045.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 197 Blast hits to 197 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 107; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT2G14045.1p  transcript_id AT2G14045.1  protein_id AT2G14045.1p  transcript_id AT2G14045.1  
At2g14045	chr2:005907133	0.0	W/5907133-5907150,5907253-5907325,5907435-5907483,5907810-5907933,5908050-5908154	AT2G14045.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 197 Blast hits to 197 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 107; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT2G14045.2p  transcript_id AT2G14045.2  protein_id AT2G14045.2p  transcript_id AT2G14045.2  
At2g14050	chr2:005909240	0.0	W/5909240-5909473,5909541-5909649,5909720-5909858,5909952-5910018,5910146-5910320,5910457-5910556,5910790-5910887,5911032-5911097,5911192-5911284,5911515-5911631,5911707-5911779,5912120-5912186,5912330-5912411,5912593-5912714,5912840-5912907,5913058-5913167,5913507-5913554,5913645-5913817	AT2G14050.1  CDS  gene_syn F9B22.16, F9B22_16, MCM9  gene MCM9  go_process DNA replication|GO:0006260||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function DNA binding|GO:0003677||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component cellular_component|GO:0005575||ND  go_process DNA replication initiation|GO:0006270||ISS  go_function DNA binding|GO:0003677||ISS  go_function ATP binding|GO:0005524||ISS  go_function DNA-dependent ATPase activity|GO:0008094||ISS  product MCM9; ATP binding / DNA binding / DNA-dependent ATPase/ nucleoside-triphosphatase/ nucleotide binding  note MCM9; FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: DNA replication initiation, DNA replication; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), ATPase, AAA+ type, core (InterPro:IPR003593), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA-dependent ATPase MCM (InterPro:IPR001208); BEST Arabidopsis thaliana protein match is: ATP binding / DNA binding / DNA-dependent ATPase (TAIR:AT1G44900.1); Has 3655 Blast hits to 3502 proteins in 674 species: Archae - 233; Bacteria - 770; Metazoa - 996; Fungi - 615; Plants - 225; Viruses - 3; Other Eukaryotes - 813 (source: NCBI BLink).  protein_id AT2G14050.1p  transcript_id AT2G14050.1  protein_id AT2G14050.1p  transcript_id AT2G14050.1  
At2g14060	chr2:005915717	0.0	C/5915717-5915767,5914973-5915626,5914514-5914888	AT2G14060.1  CDS  gene_syn F9B22.17, F9B22_17  function encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)  go_component membrane|GO:0016020|17432890|IDA  go_process fatty acid biosynthetic process|GO:0006633|10375393|TAS  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757|10852939|ISS  product S-adenosyl-L-methionine:carboxyl methyltransferase family protein  note S-adenosyl-L-methionine:carboxyl methyltransferase family protein; FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine:carboxyl methyltransferase family protein (TAIR:AT5G38020.1); Has 567 Blast hits to 557 proteins in 95 species: Archae - 0; Bacteria - 46; Metazoa - 6; Fungi - 3; Plants - 448; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT2G14060.1p  transcript_id AT2G14060.1  protein_id AT2G14060.1p  transcript_id AT2G14060.1  
At2g14070	chr2:005921881	0.0	W/5921881-5922068,5922588-5922990	AT2G14070.1  CDS  gene_syn F9B22.18, F9B22_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product wound-responsive protein-related  note wound-responsive protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G59180.1); Has 108 Blast hits to 108 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G14070.1p  transcript_id AT2G14070.1  protein_id AT2G14070.1p  transcript_id AT2G14070.1  
At2g14080	chr2:005925225	0.0	W/5925225-5925823,5926196-5927306,5927407-5927709,5927966-5929600	AT2G14080.1  CDS  gene_syn T22C12.1  go_component endomembrane system|GO:0012505||IEA  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane, endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat 3 (InterPro:IPR011713), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G11250.1); Has 39511 Blast hits to 18646 proteins in 736 species: Archae - 26; Bacteria - 2218; Metazoa - 5046; Fungi - 298; Plants - 29115; Viruses - 22; Other Eukaryotes - 2786 (source: NCBI BLink).  protein_id AT2G14080.1p  transcript_id AT2G14080.1  protein_id AT2G14080.1p  transcript_id AT2G14080.1  
At2g14090	chr2:005930000	0.0	C/5930000-5931585	AT2G14090.1  pseudogenic_transcript  pseudo  gene_syn T22C12.2, T22C12_2  note pseudogene, expressed protein  
At2g14095	chr2:005933475	0.0	C/5933475-5933752,5933244-5933329,5932880-5933082,5932506-5932643	AT2G14095.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 63 Blast hits to 60 proteins in 16 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 4; Plants - 46; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT2G14095.1p  transcript_id AT2G14095.1  protein_id AT2G14095.1p  transcript_id AT2G14095.1  
At2g14100	chr2:005935451	0.0	C/5935451-5936371,5934733-5935368	AT2G14100.1  CDS  gene_syn CYP705A13, CYTOCHROME P450, FAMILY 705, SUBFAMILY A, POLYPEPTIDE 13, T22C12.3, T22C12_3  gene CYP705A13  function a member of the cytochrome P450 family  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP705A13; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP705A13; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: electron carrier/ heme binding / iron ion binding / monooxygenase (TAIR:AT3G32047.1); Has 24163 Blast hits to 24019 proteins in 1283 species: Archae - 21; Bacteria - 2408; Metazoa - 10368; Fungi - 4669; Plants - 5697; Viruses - 6; Other Eukaryotes - 994 (source: NCBI BLink).  protein_id AT2G14100.1p  transcript_id AT2G14100.1  protein_id AT2G14100.1p  transcript_id AT2G14100.1  
At2g14110	chr2:005952005	0.0	W/5952005-5952114,5952280-5952451,5952610-5952726,5952829-5953002	AT2G14110.1  CDS  gene_syn T22C12.4, T22C12_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily phosphatase, subfamily IIIC (InterPro:IPR010033); Has 209 Blast hits to 204 proteins in 90 species: Archae - 0; Bacteria - 19; Metazoa - 51; Fungi - 76; Plants - 44; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT2G14110.1p  transcript_id AT2G14110.1  protein_id AT2G14110.1p  transcript_id AT2G14110.1  
At2g14115	chr2:005953196	0.0	W/5953196-5954039	AT2G14115.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G14120  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G14115.1  
At2g14120	chr2:005959647	0.0	C/5959647-5960015,5959274-5959556,5959149-5959177,5958953-5959054,5958588-5958656,5958433-5958492,5957927-5958040,5957511-5957559,5957299-5957408,5956575-5956667,5956344-5956436,5956123-5956260,5955802-5955915,5955608-5955707,5955419-5955457,5955073-5955215,5954837-5954983,5954651-5954703,5954467-5954566,5954253-5954390	AT2G14120.2  CDS  gene_syn ADL2B, DRP3B, DYNAMIN RELATED PROTEIN, T22C12.5, T22C12_5  gene DRP3B  function Encodes a dynamin related protein. DRPs are self-assembling GTPasse involved in fission and fusion of membranes. DRP3B functions in mitochondrion and peroxisome fission in combination with DRP3A.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_component mitochondrion|GO:0005739|18785999|IDA  go_component mitochondrion|GO:0005739|19144001|IDA  go_component peroxisome|GO:0005777|18785999|IDA  go_component peroxisome|GO:0005777|19144001|IDA  go_process mitochondrial fission|GO:0000266|19144001|IGI  go_process post-embryonic development|GO:0009791|19144001|IGI  go_process peroxisome fission|GO:0016559|18785999|IMP  go_process peroxisome fission|GO:0016559|19144001|IMP  go_function GTPase activity|GO:0003924||ISS  go_function GTP binding|GO:0005525||ISS  product dynamin-like protein 2b (ADL2b)  note DYNAMIN RELATED PROTEIN (DRP3B); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: post-embryonic development, peroxisome fission, mitochondrial fission; LOCATED IN: mitochondrion, peroxisome, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130), Dynamin, GTPase region (InterPro:IPR001401), Dynamin central region (InterPro:IPR000375); BEST Arabidopsis thaliana protein match is: DRP3A (DYNAMIN-RELATED PROTEIN 3A); GTP binding / GTPase/ phosphoinositide binding (TAIR:AT4G33650.1); Has 2235 Blast hits to 2077 proteins in 243 species: Archae - 2; Bacteria - 4; Metazoa - 1081; Fungi - 541; Plants - 276; Viruses - 0; Other Eukaryotes - 331 (source: NCBI BLink).  protein_id AT2G14120.2p  transcript_id AT2G14120.2  protein_id AT2G14120.2p  transcript_id AT2G14120.2  
At2g14120	chr2:005959647	0.0	C/5959647-5960015,5959274-5959556,5959149-5959177,5958953-5959054,5958588-5958656,5958433-5958492,5957927-5958040,5957511-5957559,5957299-5957408,5956575-5956667,5956344-5956436,5956123-5956260,5955802-5955915,5955612-5955707,5955419-5955461,5955073-5955215,5954837-5954983,5954651-5954703,5954467-5954566,5954253-5954390	AT2G14120.1  CDS  gene_syn ADL2B, DRP3B, DYNAMIN RELATED PROTEIN, T22C12.5, T22C12_5  gene DRP3B  function Encodes a dynamin related protein. DRPs are self-assembling GTPasse involved in fission and fusion of membranes. DRP3B functions in mitochondrion and peroxisome fission in combination with DRP3A.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_component mitochondrion|GO:0005739|18785999|IDA  go_component mitochondrion|GO:0005739|19144001|IDA  go_component peroxisome|GO:0005777|18785999|IDA  go_component peroxisome|GO:0005777|19144001|IDA  go_process mitochondrial fission|GO:0000266|19144001|IGI  go_process post-embryonic development|GO:0009791|19144001|IGI  go_process peroxisome fission|GO:0016559|18785999|IMP  go_process peroxisome fission|GO:0016559|19144001|IMP  go_function GTPase activity|GO:0003924||ISS  go_function GTP binding|GO:0005525||ISS  product dynamin-like protein 2b (ADL2b)  note DYNAMIN RELATED PROTEIN (DRP3B); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: post-embryonic development, peroxisome fission, mitochondrial fission; LOCATED IN: mitochondrion, peroxisome, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130), Dynamin, GTPase region (InterPro:IPR001401), Dynamin central region (InterPro:IPR000375); BEST Arabidopsis thaliana protein match is: DRP3A (DYNAMIN-RELATED PROTEIN 3A); GTP binding / GTPase/ phosphoinositide binding (TAIR:AT4G33650.1); Has 2269 Blast hits to 2077 proteins in 243 species: Archae - 2; Bacteria - 4; Metazoa - 1117; Fungi - 539; Plants - 276; Viruses - 0; Other Eukaryotes - 331 (source: NCBI BLink).  protein_id AT2G14120.1p  transcript_id AT2G14120.1  protein_id AT2G14120.1p  transcript_id AT2G14120.1  
At2g14120	chr2:005959647	0.0	C/5959647-5960015,5959274-5959556,5959149-5959177,5958953-5959054,5958588-5958656,5958433-5958492,5957927-5958040,5957511-5957559,5957299-5957408,5956900-5956989,5956575-5956664,5956344-5956436,5956123-5956260,5955802-5955915,5955612-5955707,5955419-5955461,5955073-5955215,5954837-5954983,5954651-5954703,5954467-5954566,5954253-5954390	AT2G14120.3  CDS  gene_syn ADL2B, DRP3B, DYNAMIN RELATED PROTEIN, T22C12.5, T22C12_5  gene DRP3B  function Encodes a dynamin related protein. DRPs are self-assembling GTPasse involved in fission and fusion of membranes. DRP3B functions in mitochondrion and peroxisome fission in combination with DRP3A.  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_component mitochondrion|GO:0005739|18785999|IDA  go_component mitochondrion|GO:0005739|19144001|IDA  go_component peroxisome|GO:0005777|18785999|IDA  go_component peroxisome|GO:0005777|19144001|IDA  go_process mitochondrial fission|GO:0000266|19144001|IGI  go_process post-embryonic development|GO:0009791|19144001|IGI  go_process peroxisome fission|GO:0016559|18785999|IMP  go_process peroxisome fission|GO:0016559|19144001|IMP  go_function GTPase activity|GO:0003924||ISS  go_function GTP binding|GO:0005525||ISS  product dynamin-like protein 2b (ADL2b)  note DYNAMIN RELATED PROTEIN (DRP3B); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: post-embryonic development, peroxisome fission, mitochondrial fission; LOCATED IN: mitochondrion, peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130), Dynamin, GTPase region (InterPro:IPR001401), Dynamin central region (InterPro:IPR000375); BEST Arabidopsis thaliana protein match is: DRP3A (DYNAMIN-RELATED PROTEIN 3A); GTP binding / GTPase/ phosphoinositide binding (TAIR:AT4G33650.1).  protein_id AT2G14120.3p  transcript_id AT2G14120.3  protein_id AT2G14120.3p  transcript_id AT2G14120.3  
At2g14130	chr2:005960800	0.0	W/5960800-5965445	AT2G14130.1  mRNA_TE_gene  pseudo  gene_syn T22C12.6, T22C12_6  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G47260.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G04010.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G44500.1); similar to hypothetical protein 26.t00072 [Brassica oleracea] (GB:ABD65017.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At2g14140	chr2:005967178	0.0	W/5967178-5971487	AT2G14140.1  mRNA_TE_gene  pseudo  gene_syn T22C12.7, T22C12_7  note Transposable element gene, similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT3G47270.1); similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT3G30450.1); similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT2G04970.1); similar to Agenet domain containing protein [Brassica oleracea] (GB:ABD65016.1); contains InterPro domain Protein of unknown function DUF1299; (InterPro:IPR010725); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623)  
At2g14150	chr2:005972313	0.0	C/5972313-5974278	AT2G14150.1  mRNA_TE_gene  pseudo  gene_syn T22C12.8  note Transposable element gene, Mutator-like transposase family, has a 1.5e-80 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g14160	chr2:005976688	0.0	C/5976688-5976801,5976465-5976608	AT2G14160.1  CDS  gene_syn T22C12.9, T22C12_9  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product nucleic acid binding / nucleotide binding  note nucleic acid binding / nucleotide binding; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein, putative (TAIR:AT2G21690.1); Has 200 Blast hits to 200 proteins in 37 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 198; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G14160.1p  transcript_id AT2G14160.1  protein_id AT2G14160.1p  transcript_id AT2G14160.1  
At2g14170	chr2:005981481	0.0	C/5981481-5981489,5981335-5981406,5981085-5981246,5980938-5981016,5980687-5980841,5980517-5980580,5980175-5980254,5979916-5979981,5979607-5979657,5979366-5979517,5978987-5979077,5978795-5978875,5978517-5978594,5978412-5978447,5978276-5978319,5978110-5978188,5977922-5978012,5977727-5977833	AT2G14170.2  CDS  gene_syn ALDEHYDE DEHYDROGENASE 6B2, ALDH6B2, T22C12.10, T22C12_10  gene ALDH6B2  function Arabidopsis thaliana methylmalonate-semialdehyde dehydrogenase  go_function methylmalonate-semialdehyde dehydrogenase (acylating) activity|GO:0004491||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|14764908|IDA  go_process response to oxidative stress|GO:0006979|12492832|IDA  go_function 3-chloroallyl aldehyde dehydrogenase activity|GO:0004028||ISS  product ALDH6B2; 3-chloroallyl aldehyde dehydrogenase/ methylmalonate-semialdehyde dehydrogenase (acylating)/ oxidoreductase  note ALDH6B2; FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, methylmalonate-semialdehyde dehydrogenase (acylating) activity, oxidoreductase activity; INVOLVED IN: response to oxidative stress; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160), Methylmalonate-semialdehyde dehydrogenase (InterPro:IPR010061); BEST Arabidopsis thaliana protein match is: ALDH2C4; 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD)/ coniferyl-aldehyde dehydrogenase (TAIR:AT3G24503.1); Has 40825 Blast hits to 40618 proteins in 1754 species: Archae - 242; Bacteria - 18530; Metazoa - 2196; Fungi - 1319; Plants - 570; Viruses - 0; Other Eukaryotes - 17968 (source: NCBI BLink).  protein_id AT2G14170.2p  transcript_id AT2G14170.2  protein_id AT2G14170.2p  transcript_id AT2G14170.2  
At2g14170	chr2:005981662	0.0	C/5981662-5981899,5981481-5981578,5981335-5981406,5981085-5981246,5980938-5981016,5980687-5980841,5980517-5980580,5980175-5980254,5979916-5979981,5979607-5979657,5979366-5979517,5978987-5979077,5978795-5978875,5978517-5978594,5978412-5978447,5978276-5978319,5978110-5978188,5977851-5978012	AT2G14170.3  CDS  gene_syn ALDEHYDE DEHYDROGENASE 6B2, ALDH6B2, T22C12.10, T22C12_10  gene ALDH6B2  function Arabidopsis thaliana methylmalonate-semialdehyde dehydrogenase  go_function methylmalonate-semialdehyde dehydrogenase (acylating) activity|GO:0004491||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|14764908|IDA  go_process response to oxidative stress|GO:0006979|12492832|IDA  go_function 3-chloroallyl aldehyde dehydrogenase activity|GO:0004028||ISS  product ALDH6B2; 3-chloroallyl aldehyde dehydrogenase/ methylmalonate-semialdehyde dehydrogenase (acylating)/ oxidoreductase  note ALDH6B2; FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, methylmalonate-semialdehyde dehydrogenase (acylating) activity, oxidoreductase activity; INVOLVED IN: response to oxidative stress; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160), Methylmalonate-semialdehyde dehydrogenase (InterPro:IPR010061); BEST Arabidopsis thaliana protein match is: ALDH2C4; 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD)/ coniferyl-aldehyde dehydrogenase (TAIR:AT3G24503.1); Has 40682 Blast hits to 40477 proteins in 1754 species: Archae - 242; Bacteria - 18527; Metazoa - 2173; Fungi - 1319; Plants - 570; Viruses - 0; Other Eukaryotes - 17851 (source: NCBI BLink).  protein_id AT2G14170.3p  transcript_id AT2G14170.3  protein_id AT2G14170.3p  transcript_id AT2G14170.3  
At2g14170	chr2:005981662	0.0	C/5981662-5981899,5981481-5981578,5981335-5981406,5981085-5981246,5980938-5981016,5980687-5980841,5980517-5980580,5980175-5980254,5979916-5979981,5979607-5979657,5979366-5979517,5978987-5979077,5978795-5978875,5978517-5978594,5978412-5978447,5978276-5978319,5978110-5978188,5977922-5978012,5977727-5977833	AT2G14170.1  CDS  gene_syn ALDEHYDE DEHYDROGENASE 6B2, ALDH6B2, T22C12.10, T22C12_10  gene ALDH6B2  function Arabidopsis thaliana methylmalonate-semialdehyde dehydrogenase  go_function methylmalonate-semialdehyde dehydrogenase (acylating) activity|GO:0004491||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|14764908|IDA  go_process response to oxidative stress|GO:0006979|12492832|IDA  go_function 3-chloroallyl aldehyde dehydrogenase activity|GO:0004028||ISS  product ALDH6B2; 3-chloroallyl aldehyde dehydrogenase/ methylmalonate-semialdehyde dehydrogenase (acylating)/ oxidoreductase  note ALDH6B2; FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, methylmalonate-semialdehyde dehydrogenase (acylating) activity, oxidoreductase activity; INVOLVED IN: response to oxidative stress; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160), Methylmalonate-semialdehyde dehydrogenase (InterPro:IPR010061); BEST Arabidopsis thaliana protein match is: ALDH2C4; 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD)/ coniferyl-aldehyde dehydrogenase (TAIR:AT3G24503.1); Has 40840 Blast hits to 40633 proteins in 1754 species: Archae - 242; Bacteria - 18532; Metazoa - 2196; Fungi - 1319; Plants - 570; Viruses - 0; Other Eukaryotes - 17981 (source: NCBI BLink).  protein_id AT2G14170.1p  transcript_id AT2G14170.1  protein_id AT2G14170.1p  transcript_id AT2G14170.1  
At2g14180	chr2:005987052	0.0	W/5987052-5993186	AT2G14180.1  mRNA_TE_gene  pseudo  gene_syn T22C12.11  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.3e-307 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g14190	chr2:005999323	0.0	C/5999323-6000791	AT2G14190.1  mRNA_TE_gene  pseudo  gene_syn T22C12.12  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 8.5e-177 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g14200	chr2:006009937	0.0	C/6009937-6012698	AT2G14200.1  mRNA_TE_gene  pseudo  gene_syn F15N24.6  note Transposable element gene, copia-like retrotransposon family, has a 3.0e-133 P-value blast match to gb|AAO73523.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At2g14206	chr2:006016715	0.0	W/6016715-6016810	AT2G14206.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G14206.1p  transcript_id AT2G14206.1  protein_id AT2G14206.1p  transcript_id AT2G14206.1  
At2g14210	chr2:006018841	0.0	W/6018841-6019025,6021160-6021238,6022526-6022587,6022798-6022897,6023004-6023045,6023159-6023242,6023340-6023476,6023570-6023585	AT2G14210.1  CDS  gene_syn AGAMOUS-LIKE 44, AGL44, ANR1, F15N24.5, F15N24_5  gene AGL44  function MADS box gene, transcription factor  go_component nucleus|GO:0005634||IEA  go_process response to nutrient|GO:0007584|10938795|IMP  go_process lateral root development|GO:0048527|15667327|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700|9430595|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL44 (AGAMOUS-LIKE 44); DNA binding / transcription factor  note AGAMOUS-LIKE 44 (AGL44); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to nutrient, lateral root development; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGL21; transcription factor (TAIR:AT4G37940.1); Has 5198 Blast hits to 5183 proteins in 678 species: Archae - 0; Bacteria - 6; Metazoa - 560; Fungi - 206; Plants - 4309; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT2G14210.1p  transcript_id AT2G14210.1  protein_id AT2G14210.1p  transcript_id AT2G14210.1  
At2g14220	chr2:006024060	0.0	C/6024060-6027028	AT2G14220.1  mRNA_TE_gene  pseudo  gene_syn F15N24.4  note Transposable element gene, copia-like retrotransposon family, has a 1.6e-167 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element)  
At2g14230	chr2:006027499	0.0	C/6027499-6029693	AT2G14230.1  mRNA_TE_gene  pseudo  gene_syn T1O16.18, T1O16_18  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 2.0e-119 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At2g14240	chr2:006029773	0.0	W/6029773-6030159	AT2G14240.1  mRNA_TE_gene  pseudo  gene_syn T1O16.17, T1O16_17  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G13320.1)  
At2g14245	chr2:006031151	0.0	C/6031151-6032502	AT2G14245.1  mRNA_TE_gene  pseudo  gene_syn T1O16.1  note Transposable element gene, copia-like retrotransposon family, has a 2.2e-28 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At2g14247	chr2:006034472	0.0	W/6034472-6034708	AT2G14247.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Expressed protein  note Expressed protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G14247.1p  transcript_id AT2G14247.1  protein_id AT2G14247.1p  transcript_id AT2G14247.1  
At2g14255	chr2:006036974	0.0	W/6036974-6037210,6037282-6037422,6037584-6037696,6037833-6037912,6038203-6038366,6039084-6039222,6039318-6039417,6039631-6039688,6039944-6040018,6040098-6040196,6040322-6040400,6040478-6040626,6040716-6040892	AT2G14255.1  CDS  go_function zinc ion binding|GO:0008270||IEA  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: TIP1 (TIP GROWTH DEFECTIVE 1); S-acyltransferase/ acyl binding (TAIR:AT5G20350.1); Has 68318 Blast hits to 26989 proteins in 883 species: Archae - 58; Bacteria - 4356; Metazoa - 34802; Fungi - 5316; Plants - 2471; Viruses - 957; Other Eukaryotes - 20358 (source: NCBI BLink).  protein_id AT2G14255.1p  transcript_id AT2G14255.1  protein_id AT2G14255.1p  transcript_id AT2G14255.1  
At2g14260	chr2:006043338	0.0	C/6043338-6043475,6043149-6043247,6042949-6043059,6042808-6042870,6042581-6042674,6042387-6042487,6042122-6042223,6041912-6042025,6041622-6041696,6041441-6041533	AT2G14260.2  CDS  gene_syn PIP, PROLINE IMINOPEPTIDASE  gene PIP  function encodes proline iminopeptidase  go_component chloroplast|GO:0009507|18431481|IDA  go_process proteolysis|GO:0006508||IEA  go_function aminopeptidase activity|GO:0004177||IEA  product PIP; aminopeptidase  note PIP; FUNCTIONS IN: aminopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S33, proline iminopeptidase 1 (InterPro:IPR005944), Peptidase S33, prolyl aminopeptidase (InterPro:IPR002410), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); Has 4372 Blast hits to 4372 proteins in 797 species: Archae - 13; Bacteria - 2762; Metazoa - 60; Fungi - 62; Plants - 72; Viruses - 0; Other Eukaryotes - 1403 (source: NCBI BLink).  protein_id AT2G14260.2p  transcript_id AT2G14260.2  protein_id AT2G14260.2p  transcript_id AT2G14260.2  
At2g14260	chr2:006043776	0.0	C/6043776-6043869,6043338-6043534,6043149-6043247,6042949-6043059,6042808-6042870,6042581-6042674,6042387-6042487,6042122-6042223,6041912-6042025,6041622-6041696,6041441-6041533	AT2G14260.1  CDS  gene_syn PIP, PROLINE IMINOPEPTIDASE  gene PIP  function encodes proline iminopeptidase  go_component chloroplast|GO:0009507|18431481|IDA  go_process proteolysis|GO:0006508||IEA  go_function aminopeptidase activity|GO:0004177||IEA  product PIP; aminopeptidase  note PIP; FUNCTIONS IN: aminopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S33, proline iminopeptidase 1 (InterPro:IPR005944), Peptidase S33, prolyl aminopeptidase (InterPro:IPR002410), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); Has 4377 Blast hits to 4377 proteins in 797 species: Archae - 13; Bacteria - 2764; Metazoa - 60; Fungi - 64; Plants - 72; Viruses - 0; Other Eukaryotes - 1404 (source: NCBI BLink).  protein_id AT2G14260.1p  transcript_id AT2G14260.1  protein_id AT2G14260.1p  transcript_id AT2G14260.1  
At2g14270	chr2:006045579	0.0	W/6045579-6045747,6045870-6046045	AT2G14270.1  CDS  gene_syn T1O16.14, T1O16_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32720.1).  protein_id AT2G14270.1p  transcript_id AT2G14270.1  protein_id AT2G14270.1p  transcript_id AT2G14270.1  
At2g14280	chr2:006049000	0.0	W/6049000-6049775	AT2G14280.1  mRNA_TE_gene  pseudo  gene_syn T1O16.13  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 3.1e-16 P-value blast match to GB:AAC34906 reverse transcriptase (LINE-element) (Forficula auricularia)  
At2g14282	chr2:006050327	0.0	C/6050327-6050393,6049928-6050154	AT2G14282.1  CDS  gene_syn SCR-Like 18, SCRL18  gene SCRL18  function Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).  go_component endomembrane system|GO:0012505||IEA  product SCRL18 (SCR-Like 18)  note SCR-Like 18 (SCRL18); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: SCRL17 (SCR-Like 17) (TAIR:AT2G25685.1); Has 11 Blast hits to 11 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G14282.1p  transcript_id AT2G14282.1  protein_id AT2G14282.1p  transcript_id AT2G14282.1  
At2g14285	chr2:006053488	0.0	C/6053488-6053500,6053098-6053135,6052853-6052917,6052612-6052681	AT2G14285.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Small nuclear ribonucleoprotein SmF (InterPro:IPR016487), Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) (TAIR:AT4G30220.1); Has 585 Blast hits to 585 proteins in 157 species: Archae - 67; Bacteria - 0; Metazoa - 219; Fungi - 139; Plants - 63; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).  protein_id AT2G14285.1p  transcript_id AT2G14285.1  protein_id AT2G14285.1p  transcript_id AT2G14285.1  
At2g14288	chr2:006056038	0.0	C/6056038-6056778	AT2G14288.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT3G24610.1); Has 61 Blast hits to 58 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G14288.1p  transcript_id AT2G14288.1  protein_id AT2G14288.1p  transcript_id AT2G14288.1  
At2g14289	chr2:006056913	0.0	C/6056913-6057020	AT2G14289.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G14289.1p  transcript_id AT2G14289.1  protein_id AT2G14289.1p  transcript_id AT2G14289.1  
At2g14290	chr2:006057439	0.0	C/6057439-6058500	AT2G14290.1  CDS  gene_syn T1O16.12, T1O16_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf apex, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G25290.1); Has 188 Blast hits to 181 proteins in 7 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 186; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G14290.1p  transcript_id AT2G14290.1  protein_id AT2G14290.1p  transcript_id AT2G14290.1  
At2g14300	chr2:006060317	0.0	C/6060317-6065238	AT2G14300.1  mRNA_TE_gene  pseudo  gene_syn T1O16.11, T1O16_11  note Transposable element gene, pseudogene, similar to putative helicase, blastp match of 40% identity and 2.5e-288 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)}  
At2g14310	chr2:006067397	0.0	C/6067397-6069732	AT2G14310.1  mRNA_TE_gene  pseudo  gene_syn T1O16.10  note Transposable element gene, pseudogene, similar to Replication protein A 70 kDa DNA-binding subunit (RP-A) (RF-A) (Replication factor-A protein 1) (Single-stranded DNA-binding protein) (DMRPA1). (Fruit fly), blastp match of 27% identity and 6.3e-08 P-value to SP|Q24492|RFA1_DROME Replication protein A 70 kDa DNA-binding subunit (RP-A) (RF-A) (Replication factor-A protein 1) (Single-stranded DNA-binding protein) (DMRPA1). (Fruit fly) {Drosophila melanogaster}  
At2g14320	chr2:006071274	0.0	W/6071274-6073704	AT2G14320.1  mRNA_TE_gene  pseudo  gene_syn T1O16.9  note Transposable element gene, Mutator-like transposase family, has a 5.7e-45 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g14330	chr2:006074162	0.0	W/6074162-6075394	AT2G14330.1  mRNA_TE_gene  pseudo  gene_syn T1O16.8, T1O16_8  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G45350.1); similar to hypothetical protein 31.t00082 [Brassica oleracea] (GB:ABD65101.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At2g14335	chr2:006077330	0.0	C/6077330-6077725	AT2G14335.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g14340	chr2:006078121	0.0	W/6078121-6078961	AT2G14340.1  mRNA_TE_gene  pseudo  gene_syn T1O16.7, T1O16_7  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G45370.1)  
At2g14350	chr2:006079560	0.0	C/6079560-6082161	AT2G14350.1  mRNA_TE_gene  pseudo  gene_syn T1O16.6, T1O16_6  function pseudogene of unknown protein  note Transposable element gene, expressed protein, contains Pfam profile PF03384: Drosophila protein of unknown function, DUF287  
At2g14365	chr2:006088369	0.0	W/6088369-6088447,6088587-6088738	AT2G14365.1  CDS  gene_syn LCR84, Low-molecular-weight cysteine-rich 84  gene LCR84  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR84 (Low-molecular-weight cysteine-rich 84)  note Low-molecular-weight cysteine-rich 84 (LCR84); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G22345.1); Has 16 Blast hits to 16 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G14365.1p  transcript_id AT2G14365.1  protein_id AT2G14365.1p  transcript_id AT2G14365.1  
At2g14370	chr2:006095106	0.0	W/6095106-6097130	AT2G14370.1  mRNA_TE_gene  pseudo  gene_syn T1O16.4  note Transposable element gene, gypsy-like retrotransposon family, has a 1.2e-116 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At2g14378	chr2:006104869	0.0	C/6104869-6105231	AT2G14378.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35165.1); Has 77 Blast hits to 74 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G14378.1p  transcript_id AT2G14378.1  protein_id AT2G14378.1p  transcript_id AT2G14378.1  
At2g14380	chr2:006105572	0.0	C/6105572-6109008	AT2G14380.1  mRNA_TE_gene  pseudo  gene_syn T1O16.3, T1O16_3  note Transposable element gene, gypsy-like retrotransposon family, has a 1.6e-123 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At2g14390	chr2:006110912	0.0	W/6110912-6111050,6111132-6111349,6111487-6111918	AT2G14390.1  CDS  gene_syn T1O16.2, T1O16_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 244 Blast hits to 240 proteins in 53 species: Archae - 0; Bacteria - 11; Metazoa - 184; Fungi - 2; Plants - 4; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT2G14390.1p  transcript_id AT2G14390.1  protein_id AT2G14390.1p  transcript_id AT2G14390.1  
At2g14400	chr2:006113841	0.0	W/6113841-6119183	AT2G14400.1  mRNA_TE_gene  pseudo  gene_syn T13P21.22, T13P21_22  note Transposable element gene, gypsy-like retrotransposon family, has a 5.4e-191 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At2g14405	chr2:006120126	0.0	C/6120126-6120741	AT2G14405.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At2g14410	chr2:006121372	0.0	C/6121372-6124329	AT2G14410.1  pseudogenic_transcript  pseudo  gene_syn T13P21.21, T13P21_21  note pseudogene, hypothetical protein, similar to Myosin heavy chain, non-muscle (Zipper protein) (Myosin II)(SP:Q99323) {Drosophila melanogaster}  
At2g14415	chr2:006126673	0.0	C/6126673-6127692	AT2G14415.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.7e-18 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At2g14420	chr2:006129677	0.0	W/6129677-6130479	AT2G14420.1  mRNA_TE_gene  pseudo  gene_syn T13P21.20, T13P21_20  note Transposable element gene, Mutator-like transposase family, has a 8.4e-10 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At2g14430	chr2:006134010	0.0	W/6134010-6139121	AT2G14430.1  mRNA_TE_gene  pseudo  gene_syn T13P21.19, T13P21_19  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.5e-45 P-value blast match to GB:BAA20419 reverse transcriptase (LINE-element) (Mus musculus)  
At2g14440	chr2:006143073	0.0	W/6143073-6143154,6143263-6143809,6144165-6144640,6144839-6144983,6145066-6145137,6145211-6145282,6145362-6145433,6145502-6145582,6145696-6145823,6146031-6146227,6146313-6146439,6146536-6146601,6146728-6146917,6147014-6147419	AT2G14440.1  CDS  gene_syn T13P21.18, T13P21_18  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat protein kinase, putative  note leucine-rich repeat protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT2G14510.1); Has 123128 Blast hits to 87547 proteins in 2674 species: Archae - 56; Bacteria - 7779; Metazoa - 39801; Fungi - 6264; Plants - 53250; Viruses - 364; Other Eukaryotes - 15614 (source: NCBI BLink).  protein_id AT2G14440.1p  transcript_id AT2G14440.1  protein_id AT2G14440.1p  transcript_id AT2G14440.1  
At2g14450	chr2:006149597	0.0	W/6149597-6152117	AT2G14450.1  mRNA_TE_gene  pseudo  gene_syn T13P21.17, T13P21_17  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35920.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13270.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G34960.1); similar to hypothetical protein 31.t00031 [Brassica oleracea] (GB:ABD65118.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At2g14455	chr2:006152949	0.0	W/6152949-6154256	AT2G14455.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to replication protein-related [Arabidopsis thaliana] (TAIR:AT1G35930.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At2g14460	chr2:006154580	0.0	C/6154580-6154705	AT2G14460.1  CDS  gene_syn T13P21.16, T13P21_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G14460.1p  transcript_id AT2G14460.1  protein_id AT2G14460.1p  transcript_id AT2G14460.1  
At2g14470	chr2:006155776	0.0	W/6155776-6161811	AT2G14470.1  mRNA_TE_gene  pseudo  gene_syn T13P21.15, T13P21_15  note Transposable element gene, pseudogene, similar to putative helicase, low similarity to SP|Q9UUA2 DNA repair and recombination protein pif1, mitochondrial precursor {Schizosaccharomyces pombe}; blastp match of 39% identity and 1.1e-272 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)}  
At2g14475	chr2:006163928	0.0	C/6163928-6164963	AT2G14475.1  pseudogenic_transcript  pseudo  note pseudogene, similar to putative beta proteasome subunit, blastp match of 64% identity and 2.7e-16 P-value to GP|14594921|emb|CAC43321.1||AJ291736 putative beta proteasome subunit {Nicotiana tabacum}  
At2g14490	chr2:006164999	0.0	C/6164999-6165986	AT2G14490.1  pseudogenic_transcript  pseudo  gene_syn T13P21.13, T13P21_13  note pseudogene, ARF GTPase-activating domain-containing protein, similar to zinc finger and C2 domain protein GI:9957238 from (Arabidopsis thaliana); blastp match of 53% identity and 4.3e-27 P-value to GP|19386828|dbj|BAB86206.1||AP003735 putative zinc finger and C2 domain protein {Oryza sativa (japonica cultivar-group)}  
At2g14500	chr2:006166936	0.0	W/6166936-6167979	AT2G14500.1  CDS  gene_syn T13P21.12, T13P21_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G25290.1); Has 152 Blast hits to 150 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 152; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G14500.1p  transcript_id AT2G14500.1  protein_id AT2G14500.1p  transcript_id AT2G14500.1  
At2g14510	chr2:006174971	0.0	C/6174971-6175052,6174317-6174860,6173748-6174223,6173410-6173554,6173264-6173335,6173113-6173184,6172964-6173044,6172723-6172871,6172318-6172514,6172104-6172230,6171942-6172007,6171636-6171825,6171133-6171538	AT2G14510.1  CDS  gene_syn T13P21.11, T13P21_11  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat protein kinase, putative  note leucine-rich repeat protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT2G14440.1); Has 98496 Blast hits to 82841 proteins in 2609 species: Archae - 36; Bacteria - 7140; Metazoa - 36215; Fungi - 6011; Plants - 34708; Viruses - 316; Other Eukaryotes - 14070 (source: NCBI BLink).  protein_id AT2G14510.1p  transcript_id AT2G14510.1  protein_id AT2G14510.1p  transcript_id AT2G14510.1  
At2g14520	chr2:006184471	0.0	C/6184471-6184648,6184251-6184327,6184077-6184160,6183848-6183961,6183646-6183732,6183395-6183534,6183227-6183314,6183055-6183128,6182845-6182969,6182502-6182761,6182362-6182406	AT2G14520.1  CDS  gene_syn T13P21.10, T13P21_10  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product CBS domain-containing protein  note CBS domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein (TAIR:AT4G33700.1); Has 8119 Blast hits to 8087 proteins in 1402 species: Archae - 66; Bacteria - 5414; Metazoa - 235; Fungi - 115; Plants - 118; Viruses - 0; Other Eukaryotes - 2171 (source: NCBI BLink).  protein_id AT2G14520.1p  transcript_id AT2G14520.1  protein_id AT2G14520.1p  transcript_id AT2G14520.1  
At2g14530	chr2:006187484	0.0	W/6187484-6187883,6188029-6188206,6188433-6188573,6189084-6189204,6189459-6189593,6189874-6190137	AT2G14530.1  CDS  gene_syn T13P21.9, T13P21_9  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64470.2); Has 704 Blast hits to 689 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 702; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G14530.1p  transcript_id AT2G14530.1  protein_id AT2G14530.1p  transcript_id AT2G14530.1  
At2g14535	chr2:006193271	0.0	W/6193271-6194674	AT2G14535.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.2e-19 P-value blast match to GB:CAA37925 orf 3 (Ty1_Copia-element) (Arabidopsis thaliana)  
At2g14540	chr2:006198914	0.0	C/6198914-6199390,6197922-6198668	AT2G14540.1  CDS  gene_syn T13P21.8, T13P21_8  go_function serine-type endopeptidase inhibitor activity|GO:0004867||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function serine-type endopeptidase inhibitor activity|GO:0004867||ISS  product serpin family protein / serine protease inhibitor family protein  note serpin family protein / serine protease inhibitor family protein; FUNCTIONS IN: serine-type endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protease inhibitor I4, serpin, plant (InterPro:IPR015554), Protease inhibitor I4, serpin (InterPro:IPR000215); BEST Arabidopsis thaliana protein match is: serpin family protein / serine protease inhibitor family protein (TAIR:AT1G62170.1); Has 4581 Blast hits to 4552 proteins in 323 species: Archae - 52; Bacteria - 213; Metazoa - 3519; Fungi - 1; Plants - 216; Viruses - 417; Other Eukaryotes - 163 (source: NCBI BLink).  protein_id AT2G14540.1p  transcript_id AT2G14540.1  protein_id AT2G14540.1p  transcript_id AT2G14540.1  
At2g14550	chr2:006202988	0.0	W/6202988-6204746	AT2G14550.1  pseudogenic_transcript  pseudo  gene_syn T13P21.7, T13P21_7  note pseudogene, putative pre-mRNA splicing factor, non-consensus splice donor TA at exon 5; blastp match of 67% identity and 1.1e-68 P-value to GP|28374170|gb|AAH45264.1||BC045264 Similar to splicing factor 3b, subunit 4, 49kD {Xenopus laevis}  
At2g14560	chr2:006214150	0.0	W/6214150-6214371,6214456-6214683,6214997-6215170	AT2G14560.1  CDS  gene_syn LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA, LURP1, T13P21.6, T13P21_6  gene LURP1  function Encodes LURP1, a member of the LURP cluster (late upregulated in response to Hyaloperonospora parasitica) which exhibits a pronounced upregulation after recognition of the pathogenic oomycte H. parasitica. LURP1 is required for full basal defense to H. parasitica and resistance to this pathogen mediated by the R-proteins RPP4 and RPP5.  go_component cellular_component|GO:0005575||ND  go_process response to salicylic acid stimulus|GO:0009751|18346188|IEP  go_process defense response to fungus|GO:0050832|18346188|IMP  go_function molecular_function|GO:0003674||ND  product LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA)  note LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA (LURP1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to fungus, response to salicylic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G33840.1); Has 175 Blast hits to 175 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 13; Plants - 162; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G14560.1p  transcript_id AT2G14560.1  protein_id AT2G14560.1p  transcript_id AT2G14560.1  
At2g14560	chr2:006214150	0.0	W/6214150-6214371,6214456-6214773	AT2G14560.2  CDS  gene_syn LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA, LURP1, T13P21.6, T13P21_6  gene LURP1  function Encodes LURP1, a member of the LURP cluster (late upregulated in response to Hyaloperonospora parasitica) which exhibits a pronounced upregulation after recognition of the pathogenic oomycte H. parasitica. LURP1 is required for full basal defense to H. parasitica and resistance to this pathogen mediated by the R-proteins RPP4 and RPP5.  go_component cellular_component|GO:0005575||ND  go_process response to salicylic acid stimulus|GO:0009751|18346188|IEP  go_process defense response to fungus|GO:0050832|18346188|IMP  go_function molecular_function|GO:0003674||ND  product LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA)  note LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA (LURP1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to fungus, response to salicylic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G33840.1); Has 106 Blast hits to 106 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G14560.2p  transcript_id AT2G14560.2  protein_id AT2G14560.2p  transcript_id AT2G14560.2  
At2g14570	chr2:006221780	0.0	C/6221780-6223917	AT2G14570.1  mRNA_TE_gene  pseudo  gene_syn T13P21.5, T13P21_5  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48290.1); similar to transposon protein, putative, Mutator sub-class [Oryza sativa (japonica cultivar-group)] (GB:ABA98502.1); contains InterPro domain Zinc finger, PMZ-type; (InterPro:IPR006564); contains InterPro domain Zinc finger, SWIM-type; (InterPro:IPR007527)  
At2g14580	chr2:006225703	0.0	C/6225703-6226188	AT2G14580.1  CDS  gene_syn ARABIDOPSIS THALIANA BASIC PATHOGENESIS-RELATED PROTEIN 1, ATPRB1, T13P21.4, T13P21_4  gene ATPRB1  function pathogenesis related protein, encodes a basic PR1-like protein. Expresses in flowers, roots, and not in leaves and responses to ethylene and methyl jasmonate. Salicylic acid represses gene expression.  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_component extracellular region|GO:0005576||ISS  go_process response to ethylene stimulus|GO:0009723|11725949|IEP  go_process response to salicylic acid stimulus|GO:0009751|11725949|IEP  go_process response to jasmonic acid stimulus|GO:0009753|11725949|IEP  go_function molecular_function|GO:0003674||ND  product ATPRB1  note ATPRB1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to jasmonic acid stimulus, response to ethylene stimulus, response to salicylic acid stimulus; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: shoot apex, shoot, flower, root, leaf; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related, conserved site (InterPro:IPR018244), Allergen V5/Tpx-1 related (InterPro:IPR001283), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: PR1 (PATHOGENESIS-RELATED GENE 1) (TAIR:AT2G14610.1); Has 2358 Blast hits to 2265 proteins in 295 species: Archae - 0; Bacteria - 50; Metazoa - 1417; Fungi - 222; Plants - 606; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT2G14580.1p  transcript_id AT2G14580.1  protein_id AT2G14580.1p  transcript_id AT2G14580.1  
At2g14590	chr2:006228837	0.0	W/6228837-6229808	AT2G14590.1  mRNA_TE_gene  pseudo  gene_syn T13P21.3  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G27606.1)  
At2g14595	chr2:006230129	0.0	W/6230129-6232147	AT2G14595.1  mRNA_TE_gene  pseudo  gene_syn T13P21.2, T13P21_2  note Transposable element gene, Mutator-like transposase family, has a 4.1e-55 P-value blast match to Q9SHN7 /450-633 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g14600	chr2:006232792	0.0	C/6232792-6233013	AT2G14600.1  mRNA_TE_gene  pseudo  gene_syn T13P21.1  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G28250.1)  
At2g14605	chr2:006237864	0.0	W/6237864-6238511	AT2G14605.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 8.9e-29 P-value blast match to GB:BAA11674 ORF(AA 1-1338) (Ty1_Copia-element) (Nicotiana tabacum)  
At2g14610	chr2:006241944	0.0	C/6241944-6242429	AT2G14610.1  CDS  gene_syn ATPR1, PATHOGENESIS-RELATED GENE 1, PATHOGENESIS-RELATED PROTEIN 1, PR 1, PR1, T6B13.15, T6B13_15  gene PR1  function PR1 gene expression is induced in response to a variety of pathogens. It is a useful molecular marker for the SAR response. Though the Genbank record for the cDNA associated to this gene is called  PR-1-like , the sequence actually corresponds to PR1. Expression of this gene is salicylic-acid responsive.  go_component cell wall|GO:0005618|15593128|IDA  go_component extracellular region|GO:0005576||ISS  go_process defense response|GO:0006952|9263449|TAS  go_process systemic acquired resistance|GO:0009627|1392589|IEP  go_process response to jasmonic acid stimulus|GO:0009753|18425591|IEP  go_process response to vitamin B1|GO:0010266|15980201|IEP  go_function molecular_function|GO:0003674||ND  product PR1 (PATHOGENESIS-RELATED GENE 1)  note PATHOGENESIS-RELATED GENE 1 (PR1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to jasmonic acid stimulus, response to vitamin B1, systemic acquired resistance, defense response; LOCATED IN: extracellular region, cell wall; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related, conserved site (InterPro:IPR018244), Allergen V5/Tpx-1 related (InterPro:IPR001283), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: ATPRB1 (TAIR:AT2G14580.1); Has 2314 Blast hits to 2221 proteins in 290 species: Archae - 0; Bacteria - 47; Metazoa - 1382; Fungi - 220; Plants - 612; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT2G14610.1p  transcript_id AT2G14610.1  protein_id AT2G14610.1p  transcript_id AT2G14610.1  
At2g14620	chr2:006244889	0.0	W/6244889-6245090,6245165-6245265,6245340-6245533,6245608-6246010	AT2G14620.1  CDS  gene_syn T6B13.14, T6B13_14  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process cellular glucan metabolic process|GO:0006073||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762||IEA  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative  note xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, apoplast, cell wall; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative (TAIR:AT5G65730.1); Has 1259 Blast hits to 1257 proteins in 185 species: Archae - 0; Bacteria - 124; Metazoa - 0; Fungi - 271; Plants - 800; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT2G14620.1p  transcript_id AT2G14620.1  protein_id AT2G14620.1p  transcript_id AT2G14620.1  
At2g14630	chr2:006252492	0.0	C/6252492-6253411	AT2G14630.1  mRNA_TE_gene  pseudo  gene_syn T6B13.13, T6B13_13  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28785.1); contains InterPro domain Putative plant transposon protein; (InterPro:IPR004252)  
At2g14635	chr2:006254528	0.0	C/6254528-6254713	AT2G14635.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein / F-box family protein (TAIR:AT2G44900.1); Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G14635.1p  transcript_id AT2G14635.1  protein_id AT2G14635.1p  transcript_id AT2G14635.1  
At2g14640	chr2:006256779	0.0	W/6256779-6260582	AT2G14640.1  mRNA_TE_gene  pseudo  gene_syn T6B13.12, T6B13_12  note Transposable element gene, gypsy-like retrotransposon family, has a 2.5e-119 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At2g14650	chr2:006265313	0.0	C/6265313-6269688	AT2G14650.1  mRNA_TE_gene  pseudo  gene_syn T6B13.11, T6B13_11  note Transposable element gene, gypsy-like retrotransposon family, has a 1.6e-311 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At2g14660	chr2:006272506	0.0	W/6272506-6272982	AT2G14660.1  CDS  gene_syn T6B13.10, T6B13_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0310 (InterPro:IPR002740); Has 2334 Blast hits to 2333 proteins in 479 species: Archae - 5; Bacteria - 781; Metazoa - 60; Fungi - 50; Plants - 22; Viruses - 0; Other Eukaryotes - 1416 (source: NCBI BLink).  protein_id AT2G14660.1p  transcript_id AT2G14660.1  protein_id AT2G14660.1p  transcript_id AT2G14660.1  
At2g14661	chr2:006273315	0.0	C/6273315-6274037	AT2G14661.1  pseudogenic_transcript  pseudo  function Pseudogene of AT2G04040; ATDTX1; antiporter/ multidrug efflux pump/ multidrug transporter/ transporter  
At2g14670	chr2:006275073	0.0	C/6275073-6276317,6274908-6274971,6274606-6274775	AT2G14670.1  CDS  gene_syn ATSUC8, Sucrose-proton symporter 8, T6B13.9, T6B13_9  gene ATSUC8  go_component integral to plasma membrane|GO:0005887||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process sucrose transport|GO:0015770||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function sucrose:hydrogen symporter activity|GO:0008506||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product ATSUC8 (Sucrose-proton symporter 8); carbohydrate transmembrane transporter/ sucrose:hydrogen symporter/ sugar:hydrogen symporter  note Sucrose-proton symporter 8 (ATSUC8); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, sucrose:hydrogen symporter activity; INVOLVED IN: transport, sucrose transport; LOCATED IN: integral to membrane, integral to plasma membrane, membrane; CONTAINS InterPro DOMAIN/s: Sucrose/H+ symporter, plant (InterPro:IPR005989), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ATSUC7 (Sucrose-proton symporter 7); carbohydrate transmembrane transporter/ sucrose:hydrogen symporter/ sugar:hydrogen symporter (TAIR:AT1G66570.1); Has 1547 Blast hits to 1430 proteins in 335 species: Archae - 28; Bacteria - 469; Metazoa - 381; Fungi - 133; Plants - 253; Viruses - 0; Other Eukaryotes - 283 (source: NCBI BLink).  protein_id AT2G14670.1p  transcript_id AT2G14670.1  protein_id AT2G14670.1p  transcript_id AT2G14670.1  
At2g14680	chr2:006278256	0.0	W/6278256-6278316,6278831-6278924,6279060-6279168,6279253-6279291,6279381-6279464,6279567-6279628,6279853-6279955,6280161-6280301,6281111-6281179,6281270-6281326,6281408-6281668,6282027-6282110,6282325-6282435,6282540-6282610,6282852-6282920,6283066-6283257,6283331-6283424,6283509-6283766	AT2G14680.2  CDS  gene_syn MEE13, T6B13.8, T6B13_8, maternal effect embryo arrest 13  gene MEE13  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function molecular_function|GO:0003674||ND  product myosin heavy chain-related  note maternal effect embryo arrest 13 (MEE13); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages.  protein_id AT2G14680.2p  transcript_id AT2G14680.2  protein_id AT2G14680.2p  transcript_id AT2G14680.2  
At2g14680	chr2:006278256	0.0	W/6278256-6278316,6278831-6278924,6279060-6279168,6279253-6279291,6279381-6279464,6279567-6279628,6279853-6279955,6280161-6280301,6281111-6281179,6281270-6281326,6281408-6281668,6282027-6282110,6282325-6282435,6282540-6282610,6283066-6283257,6283331-6283424,6283509-6283766	AT2G14680.1  CDS  gene_syn MEE13, T6B13.8, T6B13_8, maternal effect embryo arrest 13  gene MEE13  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function molecular_function|GO:0003674||ND  product myosin heavy chain-related  note maternal effect embryo arrest 13 (MEE13); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: CIP1 (COP1-INTERACTIVE PROTEIN 1); protein binding (TAIR:AT5G41790.1); Has 12047 Blast hits to 7305 proteins in 531 species: Archae - 141; Bacteria - 521; Metazoa - 7645; Fungi - 762; Plants - 466; Viruses - 5; Other Eukaryotes - 2507 (source: NCBI BLink).  protein_id AT2G14680.1p  transcript_id AT2G14680.1  protein_id AT2G14680.1p  transcript_id AT2G14680.1  
At2g14690	chr2:006285896	0.0	C/6285896-6286012,6285666-6285804,6285426-6285595,6285255-6285356,6284388-6285182,6283911-6284300	AT2G14690.1  CDS  gene_syn ATXYN4, T6B13.7, T6B13_7  function Encodes a putative glycosyl hydrolase family 10 protein (xylanase).  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function endo-1,4-beta-xylanase activity|GO:0031176|12154138|ISS  product endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds  note endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds; FUNCTIONS IN: endo-1,4-beta-xylanase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 10 protein (TAIR:AT4G33820.1); Has 1269 Blast hits to 1264 proteins in 264 species: Archae - 0; Bacteria - 640; Metazoa - 27; Fungi - 274; Plants - 160; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).  protein_id AT2G14690.1p  transcript_id AT2G14690.1  protein_id AT2G14690.1p  transcript_id AT2G14690.1  
At2g14692	chr2:006287640	0.0	W/6287640-6287771	AT2G14692.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G14692.1p  transcript_id AT2G14692.1  protein_id AT2G14692.1p  transcript_id AT2G14692.1  
At2g14700	chr2:006292466	0.0	W/6292466-6292608,6294531-6294729,6294907-6295017,6295511-6295726	AT2G14700.1  CDS  gene_syn T6B13.6, T6B13_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G14700.1p  transcript_id AT2G14700.1  protein_id AT2G14700.1p  transcript_id AT2G14700.1  
At2g14710	chr2:006298936	0.0	W/6298936-6300024	AT2G14710.1  CDS  gene_syn T6B13.1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G16580.1); Has 686 Blast hits to 673 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 686; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G14710.1p  transcript_id AT2G14710.1  protein_id AT2G14710.1p  transcript_id AT2G14710.1  
At2g14720	chr2:006303853	0.0	C/6303853-6304156,6303081-6303773,6302903-6302991,6302755-6302824,6302598-6302681,6302382-6302458,6302233-6302314,6301803-6301885,6301644-6301710,6301424-6301552,6301154-6301263,6300878-6300976	AT2G14720.1  CDS  gene_syn T6B13.2, VACUOLAR SORTING RECEPTOR 2, VSR-2  gene VSR-2  function encodes a vacuolar sorting receptor  go_component vacuole|GO:0005773|15539469|IDA  go_function calcium ion binding|GO:0005509||IEA  go_component trans-Golgi network|GO:0005802|10561538|TAS  go_component trans-Golgi network|GO:0005802|10871276|TAS  go_component integral to plasma membrane|GO:0005887||ISS  go_component Golgi transport complex|GO:0017119|10888666|IPI  go_process protein targeting to vacuole|GO:0006623|10561538|ISS  go_process protein targeting to vacuole|GO:0006623|10871276|TAS  product VSR-2; calcium ion binding  note VSR-2; FUNCTIONS IN: calcium ion binding; INVOLVED IN: protein targeting to vacuole; LOCATED IN: trans-Golgi network, integral to plasma membrane, vacuole, Golgi transport complex; EXPRESSED IN: guard cell, callus; CONTAINS InterPro DOMAIN/s: EGF-like, type 3 (InterPro:IPR000742), Growth factor, receptor (InterPro:IPR009030), EGF-like region, conserved site (InterPro:IPR013032), Protease-associated PA (InterPro:IPR003137), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-type aspartate/asparagine hydroxylation conserved site (InterPro:IPR000152), EGF (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: ATVSR3 (ARABIDOPSIS THALIANA VACULOLAR SORTING RECEPTOR 3); calcium ion binding (TAIR:AT2G14740.2); Has 11920 Blast hits to 5337 proteins in 196 species: Archae - 2; Bacteria - 87; Metazoa - 11128; Fungi - 5; Plants - 284; Viruses - 0; Other Eukaryotes - 414 (source: NCBI BLink).  protein_id AT2G14720.1p  transcript_id AT2G14720.1  protein_id AT2G14720.1p  transcript_id AT2G14720.1  
At2g14720	chr2:006303853	0.0	C/6303853-6304156,6303081-6303773,6302903-6302991,6302755-6302824,6302598-6302681,6302382-6302458,6302233-6302314,6301803-6301885,6301644-6301710,6301424-6301552,6301154-6301263,6300878-6300976	AT2G14720.2  CDS  gene_syn T6B13.2, VACUOLAR SORTING RECEPTOR 2, VSR-2  gene VSR-2  function encodes a vacuolar sorting receptor  go_component vacuole|GO:0005773|15539469|IDA  go_function calcium ion binding|GO:0005509||IEA  go_component trans-Golgi network|GO:0005802|10561538|TAS  go_component trans-Golgi network|GO:0005802|10871276|TAS  go_component integral to plasma membrane|GO:0005887||ISS  go_component Golgi transport complex|GO:0017119|10888666|IPI  go_process protein targeting to vacuole|GO:0006623|10561538|ISS  go_process protein targeting to vacuole|GO:0006623|10871276|TAS  product VSR-2; calcium ion binding  note VSR-2; FUNCTIONS IN: calcium ion binding; INVOLVED IN: protein targeting to vacuole; LOCATED IN: trans-Golgi network, integral to plasma membrane, vacuole, Golgi transport complex; EXPRESSED IN: guard cell, callus; CONTAINS InterPro DOMAIN/s: EGF-like, type 3 (InterPro:IPR000742), Growth factor, receptor (InterPro:IPR009030), EGF-like region, conserved site (InterPro:IPR013032), Protease-associated PA (InterPro:IPR003137), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-type aspartate/asparagine hydroxylation conserved site (InterPro:IPR000152), EGF (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: ATVSR3 (ARABIDOPSIS THALIANA VACULOLAR SORTING RECEPTOR 3); calcium ion binding (TAIR:AT2G14740.2); Has 11920 Blast hits to 5337 proteins in 196 species: Archae - 2; Bacteria - 87; Metazoa - 11128; Fungi - 5; Plants - 284; Viruses - 0; Other Eukaryotes - 414 (source: NCBI BLink).  protein_id AT2G14720.2p  transcript_id AT2G14720.2  protein_id AT2G14720.2p  transcript_id AT2G14720.2  
At2g14730	chr2:006305549	0.0	W/6305549-6307309	AT2G14730.1  mRNA_TE_gene  pseudo  gene_syn T6B13.5  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32621.1); similar to hypothetical protein 26.t00094 [Brassica oleracea] (GB:ABD65037.1); contains InterPro domain Protein of unknown function DUF635; (InterPro:IPR006912)  
At2g14740	chr2:006308895	0.0	W/6308895-6309198,6309293-6309985,6310063-6310151,6310252-6310321,6310395-6310478,6310823-6310899,6310964-6311045,6311416-6311498,6311579-6311645,6311734-6311862,6311967-6312076,6312205-6312303	AT2G14740.1  CDS  gene_syn ARABIDOPSIS THALIANA VACULOLAR SORTING RECEPTOR 3, ATVSR3, T6B13.4  gene ATVSR3  go_component membrane|GO:0016020|17432890|IDA  go_function calcium ion binding|GO:0005509||IEA  go_component integral to plasma membrane|GO:0005887||ISS  go_component Golgi transport complex|GO:0017119|10888666|IPI  go_process protein targeting to vacuole|GO:0006623|10561538|TAS  go_process protein targeting to vacuole|GO:0006623|10871276|ISS  go_process intracellular protein transport|GO:0006886|10871276|ISS  product ATVSR3 (ARABIDOPSIS THALIANA VACULOLAR SORTING RECEPTOR 3); calcium ion binding  note ARABIDOPSIS THALIANA VACULOLAR SORTING RECEPTOR 3 (ATVSR3); FUNCTIONS IN: calcium ion binding; INVOLVED IN: intracellular protein transport, protein targeting to vacuole; LOCATED IN: integral to plasma membrane, Golgi transport complex, membrane; EXPRESSED IN: callus, leaf; CONTAINS InterPro DOMAIN/s: EGF-like, type 3 (InterPro:IPR000742), Growth factor, receptor (InterPro:IPR009030), EGF-like region, conserved site (InterPro:IPR013032), Protease-associated PA (InterPro:IPR003137), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-type aspartate/asparagine hydroxylation conserved site (InterPro:IPR000152), EGF (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: VSR-2; calcium ion binding (TAIR:AT2G14720.2); Has 12912 Blast hits to 5652 proteins in 197 species: Archae - 2; Bacteria - 89; Metazoa - 12095; Fungi - 4; Plants - 267; Viruses - 0; Other Eukaryotes - 455 (source: NCBI BLink).  protein_id AT2G14740.1p  transcript_id AT2G14740.1  protein_id AT2G14740.1p  transcript_id AT2G14740.1  
At2g14740	chr2:006308895	0.0	W/6308895-6309198,6309293-6309985,6310063-6310151,6310252-6310321,6310395-6310478,6310823-6310899,6310964-6311045,6311416-6311498,6311579-6311645,6311734-6311862,6311967-6312076,6312205-6312303	AT2G14740.2  CDS  gene_syn ARABIDOPSIS THALIANA VACULOLAR SORTING RECEPTOR 3, ATVSR3, T6B13.4  gene ATVSR3  go_component membrane|GO:0016020|17432890|IDA  go_function calcium ion binding|GO:0005509||IEA  go_component integral to plasma membrane|GO:0005887||ISS  go_component Golgi transport complex|GO:0017119|10888666|IPI  go_process protein targeting to vacuole|GO:0006623|10561538|TAS  go_process protein targeting to vacuole|GO:0006623|10871276|ISS  go_process intracellular protein transport|GO:0006886|10871276|ISS  product ATVSR3 (ARABIDOPSIS THALIANA VACULOLAR SORTING RECEPTOR 3); calcium ion binding  note ARABIDOPSIS THALIANA VACULOLAR SORTING RECEPTOR 3 (ATVSR3); FUNCTIONS IN: calcium ion binding; INVOLVED IN: intracellular protein transport, protein targeting to vacuole; LOCATED IN: integral to plasma membrane, Golgi transport complex, membrane; EXPRESSED IN: callus, leaf; CONTAINS InterPro DOMAIN/s: EGF-like, type 3 (InterPro:IPR000742), Growth factor, receptor (InterPro:IPR009030), EGF-like region, conserved site (InterPro:IPR013032), Protease-associated PA (InterPro:IPR003137), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-type aspartate/asparagine hydroxylation conserved site (InterPro:IPR000152), EGF (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: VSR-2; calcium ion binding (TAIR:AT2G14720.2); Has 12912 Blast hits to 5652 proteins in 197 species: Archae - 2; Bacteria - 89; Metazoa - 12095; Fungi - 4; Plants - 267; Viruses - 0; Other Eukaryotes - 455 (source: NCBI BLink).  protein_id AT2G14740.2p  transcript_id AT2G14740.2  protein_id AT2G14740.2p  transcript_id AT2G14740.2  
At2g14750	chr2:006314128	0.0	W/6314128-6314323,6314403-6314543,6314628-6314777,6314863-6314981,6315070-6315154,6315240-6315286,6315409-6315501	AT2G14750.1  CDS  gene_syn ADENOSINE PHOSPHOSULFATE KINASE, AKN1, APK, APS KINASE, APS KINASE 1, ATAKN1, F26C24.11, F26C24_11  gene APK  function Encodes a functional APS kinase  go_component chloroplast|GO:0009507|19304933|IDA  go_component plastid|GO:0009536|11488606|TAS  go_process sulfate assimilation|GO:0000103|19304933|IGI  go_process sulfate assimilation|GO:0000103||ISS  go_process regulation of glucosinolate biosynthetic process|GO:0010439|19304933|IGI  go_process phosphorylation|GO:0016310|11488606|IDA  go_function adenylylsulfate kinase activity|GO:0004020|11488606|IDA  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  go_function transferase activity, transferring phosphorus-containing groups|GO:0016772||ISS  product APK (APS KINASE); ATP binding / adenylylsulfate kinase/ kinase/ transferase, transferring phosphorus-containing groups  note APS KINASE (APK); FUNCTIONS IN: adenylylsulfate kinase activity, transferase activity, transferring phosphorus-containing groups, kinase activity, ATP binding; INVOLVED IN: regulation of glucosinolate biosynthetic process, sulfate assimilation, phosphorylation; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Adenylylsulphate kinase, C-terminal (InterPro:IPR002891); BEST Arabidopsis thaliana protein match is: AKN2 (APS-kinase 2); ATP binding / adenylylsulfate kinase/ kinase/ transferase, transferring phosphorus-containing groups (TAIR:AT4G39940.1); Has 3648 Blast hits to 3648 proteins in 928 species: Archae - 35; Bacteria - 1801; Metazoa - 219; Fungi - 201; Plants - 69; Viruses - 2; Other Eukaryotes - 1321 (source: NCBI BLink).  protein_id AT2G14750.1p  transcript_id AT2G14750.1  protein_id AT2G14750.1p  transcript_id AT2G14750.1  
At2g14760	chr2:006322836	0.0	C/6322836-6323312,6322459-6322755	AT2G14760.2  CDS  gene_syn F26C24.10, F26C24_10  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix protein / bHLH protein  note basic helix-loop-helix protein / bHLH protein; FUNCTIONS IN: transcription factor activity; BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT4G33880.1); Has 55 Blast hits to 55 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 12; Fungi - 2; Plants - 29; Viruses - 3; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT2G14760.2p  transcript_id AT2G14760.2  protein_id AT2G14760.2p  transcript_id AT2G14760.2  
At2g14760	chr2:006322836	0.0	C/6322836-6323312,6322474-6322755,6322250-6322315,6322047-6322112,6321840-6321935	AT2G14760.1  CDS  gene_syn F26C24.10, F26C24_10  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix protein / bHLH protein  note basic helix-loop-helix protein / bHLH protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT4G33880.1); Has 1434 Blast hits to 1434 proteins in 80 species: Archae - 0; Bacteria - 2; Metazoa - 21; Fungi - 7; Plants - 1393; Viruses - 3; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT2G14760.1p  transcript_id AT2G14760.1  protein_id AT2G14760.1p  transcript_id AT2G14760.1  
At2g14770	chr2:006330142	0.0	W/6330142-6334932	AT2G14770.1  mRNA_TE_gene  pseudo  gene_syn F26C24.9, F26C24_9  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G27780.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G36860.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G25886.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At2g14770	chr2:006330142	0.0	W/6330142-6334932	AT2G14770.2  mRNA_TE_gene  pseudo  gene_syn F26C24.9, F26C24_9  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G27780.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G36860.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G25886.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  transcript_id AT2G14770.2  
At2g14772	chr2:006335392	0.0	W/6335392-6336075	AT2G14772.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g14774	chr2:006337066	0.0	W/6337066-6337758	AT2G14774.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05564.1); similar to hypothetical protein 40.t00047 [Brassica oleracea] (GB:ABD65162.1)  
At2g14777	chr2:006338513	0.0	W/6338513-6339189	AT2G14777.1  mRNA_TE_gene  pseudo  function pseudogene of unknown protein  note Transposable element gene, expressed protein, No suitable start codon could be identified.  
At2g14780	chr2:006339749	0.0	C/6339749-6340697	AT2G14780.1  mRNA_TE_gene  pseudo  gene_syn F26C24.8, F26C24_8  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G34710.1); similar to hypothetical protein 31.t00082 [Brassica oleracea] (GB:ABD65101.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At2g14790	chr2:006341268	0.0	C/6341268-6344219	AT2G14790.1  mRNA_TE_gene  pseudo  gene_syn F26C24.7, F26C24_7  note Transposable element gene, Mutator-like transposase family, has a 3.9e-82 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g14793	chr2:006349066	0.0	C/6349066-6349638	AT2G14793.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 2.0e-24 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At2g14796	chr2:006351159	0.0	C/6351159-6353252	AT2G14796.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.7e-05 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At2g14800	chr2:006355182	0.0	W/6355182-6355926,6355982-6356939,6357216-6357375	AT2G14800.1  CDS  gene_syn F26C24.6, F26C24_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44713.1); Has 35 Blast hits to 32 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT2G14800.1p  transcript_id AT2G14800.1  protein_id AT2G14800.1p  transcript_id AT2G14800.1  
At2g14810	chr2:006358336	0.0	C/6358336-6358470,6357465-6357530	AT2G14810.1  CDS  gene_syn F26C24.5, F26C24_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G14810.1p  transcript_id AT2G14810.1  protein_id AT2G14810.1p  transcript_id AT2G14810.1  
At2g14820	chr2:006358864	0.0	W/6358864-6358925,6359177-6359246,6359445-6360623,6360707-6361300	AT2G14820.1  CDS  gene_syn F26C24.4, F26C24_4, NAKED PINS IN YUC MUTANTS 2, NPY2  gene NPY2  function A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.  go_process response to light stimulus|GO:0009416||IEA  go_function signal transducer activity|GO:0004871||IEA  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process response to light stimulus|GO:0009416||ISS  go_function signal transducer activity|GO:0004871||ISS  product NPY2 (NAKED PINS IN YUC MUTANTS 2); protein binding / signal transducer  note NAKED PINS IN YUC MUTANTS 2 (NPY2); FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypophysis, root meristem; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: NPY3 (NAKED PINS IN YUC MUTANTS 3); protein binding / signal transducer (TAIR:AT5G67440.1); Has 433 Blast hits to 420 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 425; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G14820.1p  transcript_id AT2G14820.1  protein_id AT2G14820.1p  transcript_id AT2G14820.1  
At2g14830	chr2:006362524	0.0	W/6362524-6362568,6362649-6362788,6363556-6363681,6363764-6363893	AT2G14830.2  CDS  gene_syn F26C24.3, F26C24_3  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Zinc finger, UBP-type (InterPro:IPR001607), Histone deacetylase superfamily (InterPro:IPR000286).  protein_id AT2G14830.2p  transcript_id AT2G14830.2  protein_id AT2G14830.2p  transcript_id AT2G14830.2  
At2g14830	chr2:006362524	0.0	W/6362524-6362568,6362649-6362788,6364378-6364852,6365027-6365158,6365246-6365818	AT2G14830.1  CDS  gene_syn F26C24.3, F26C24_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51900.1); Has 611 Blast hits to 552 proteins in 111 species: Archae - 0; Bacteria - 5; Metazoa - 256; Fungi - 53; Plants - 162; Viruses - 3; Other Eukaryotes - 132 (source: NCBI BLink).  protein_id AT2G14830.1p  transcript_id AT2G14830.1  protein_id AT2G14830.1p  transcript_id AT2G14830.1  
At2g14835	chr2:006367238	0.0	W/6367238-6367261,6367549-6367629,6368140-6368257,6368356-6368450,6369235-6369306,6369536-6369790,6369898-6370009,6370222-6370408,6370523-6370610	AT2G14835.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); Has 141 Blast hits to 141 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT2G14835.1p  transcript_id AT2G14835.1  protein_id AT2G14835.1p  transcript_id AT2G14835.1  
At2g14835	chr2:006367238	0.0	W/6367238-6367261,6367549-6367629,6368140-6368257,6368356-6368450,6369235-6369306,6369536-6369790,6369898-6370009,6370222-6370408,6370523-6370610	AT2G14835.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); Has 141 Blast hits to 141 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT2G14835.2p  transcript_id AT2G14835.2  protein_id AT2G14835.2p  transcript_id AT2G14835.2  
At2g14840	chr2:006371902	0.0	W/6371902-6373082	AT2G14840.1  pseudogenic_transcript  pseudo  gene_syn F26C24.2  note pseudogene, similar to phosphoenolpyruvate carboxykinase, similar to GB:L31899; frameshift at base 16259 possibly caused by a base a pair deletion.; blastp match of 72% identity and 3.7e-81 P-value to GP|13785471|dbj|BAB43909.1||AB050473 phosphoenolpyruvate carboxykinase {Flaveria pringlei}  
At2g14843	chr2:006378876	0.0	C/6378876-6380933	AT2G14843.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 2.5e-35 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At2g14846	chr2:006382430	0.0	W/6382430-6382729	AT2G14846.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07747.1); Has 197 Blast hits to 194 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 197; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G14846.1p  transcript_id AT2G14846.1  protein_id AT2G14846.1p  transcript_id AT2G14846.1  
At2g14850	chr2:006386400	0.0	W/6386400-6387275	AT2G14850.1  CDS  gene_syn F26C24.1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G33890.2); Has 79 Blast hits to 71 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 72; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G14850.1p  transcript_id AT2G14850.1  protein_id AT2G14850.1p  transcript_id AT2G14850.1  
At2g14860	chr2:006389249	0.0	C/6389249-6389563,6388629-6388857,6388050-6388174,6387820-6387909	AT2G14860.1  CDS  gene_syn T26I20.2, T26I20_2  go_component integral to membrane|GO:0016021||IEA  go_component peroxisomal membrane|GO:0005778||ISS  go_process biological_process|GO:0008150||ND  product peroxisomal membrane protein 22 kDa, putative  note peroxisomal membrane protein 22 kDa, putative; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, peroxisomal membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Mpv17/PMP22 (InterPro:IPR007248); BEST Arabidopsis thaliana protein match is: peroxisomal membrane protein 22 kDa, putative (TAIR:AT4G33905.1); Has 987 Blast hits to 987 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 502; Fungi - 243; Plants - 159; Viruses - 11; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT2G14860.1p  transcript_id AT2G14860.1  protein_id AT2G14860.1p  transcript_id AT2G14860.1  
At2g14870	chr2:006391172	0.0	W/6391172-6391477	AT2G14870.1  CDS  gene_syn T26I20.3, T26I20_3  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT5G12190.1); Has 342 Blast hits to 342 proteins in 141 species: Archae - 0; Bacteria - 3; Metazoa - 152; Fungi - 74; Plants - 38; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT2G14870.1p  transcript_id AT2G14870.1  protein_id AT2G14870.1p  transcript_id AT2G14870.1  
At2g14880	chr2:006394533	0.0	C/6394533-6394841,6393686-6393802	AT2G14880.1  CDS  gene_syn T26I20.4, T26I20_4  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SWIB complex BAF60b domain-containing protein  note SWIB complex BAF60b domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 (InterPro:IPR003121); BEST Arabidopsis thaliana protein match is: SWIB complex BAF60b domain-containing protein (TAIR:AT4G34290.1); Has 806 Blast hits to 771 proteins in 168 species: Archae - 0; Bacteria - 129; Metazoa - 121; Fungi - 138; Plants - 186; Viruses - 10; Other Eukaryotes - 222 (source: NCBI BLink).  protein_id AT2G14880.1p  transcript_id AT2G14880.1  protein_id AT2G14880.1p  transcript_id AT2G14880.1  
At2g14890	chr2:006399679	0.0	W/6399679-6400188,6400690-6400755	AT2G14890.1  CDS  gene_syn AGP9, ARABINOGALACTAN PROTEIN 9, T26I20.5, T26I20_5  gene AGP9  function putative proline-rich protein (At2g14890) mRNA, complete  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  product AGP9 (ARABINOGALACTAN PROTEIN 9)  note ARABINOGALACTAN PROTEIN 9 (AGP9); LOCATED IN: anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 238895 Blast hits to 82305 proteins in 2376 species: Archae - 815; Bacteria - 53893; Metazoa - 90999; Fungi - 29732; Plants - 22205; Viruses - 6626; Other Eukaryotes - 34625 (source: NCBI BLink).  protein_id AT2G14890.1p  transcript_id AT2G14890.1  protein_id AT2G14890.1p  transcript_id AT2G14890.1  
At2g14890	chr2:006399679	0.0	W/6399679-6400209	AT2G14890.2  CDS  gene_syn AGP9, ARABINOGALACTAN PROTEIN 9, T26I20.5, T26I20_5  gene AGP9  function putative proline-rich protein (At2g14890) mRNA, complete  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  product AGP9 (ARABINOGALACTAN PROTEIN 9)  note ARABINOGALACTAN PROTEIN 9 (AGP9); LOCATED IN: anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 239060 Blast hits to 81236 proteins in 2370 species: Archae - 813; Bacteria - 54118; Metazoa - 91244; Fungi - 29527; Plants - 22247; Viruses - 6690; Other Eukaryotes - 34421 (source: NCBI BLink).  protein_id AT2G14890.2p  transcript_id AT2G14890.2  protein_id AT2G14890.2p  transcript_id AT2G14890.2  
At2g14900	chr2:006404210	0.0	W/6404210-6404288,6404796-6405043	AT2G14900.1  CDS  gene_syn T26I20.6, T26I20_6  go_component endomembrane system|GO:0012505||IEA  go_process response to gibberellin stimulus|GO:0009739||ISS  go_function molecular_function|GO:0003674||ND  product gibberellin-regulated family protein  note gibberellin-regulated family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to gibberellin stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: gibberellin-regulated family protein (TAIR:AT5G59845.1); Has 250 Blast hits to 250 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 250; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G14900.1p  transcript_id AT2G14900.1  protein_id AT2G14900.1p  transcript_id AT2G14900.1  
At2g14910	chr2:006408579	0.0	C/6408579-6409015,6407817-6408081,6407583-6407690,6407195-6407485	AT2G14910.2  CDS  gene_syn T26I20.7, T26I20_7  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G14970.1); Has 336 Blast hits to 331 proteins in 77 species: Archae - 0; Bacteria - 161; Metazoa - 19; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).  protein_id AT2G14910.2p  transcript_id AT2G14910.2  protein_id AT2G14910.2p  transcript_id AT2G14910.2  
At2g14910	chr2:006408579	0.0	C/6408579-6409015,6407817-6408081,6407583-6407690,6407241-6407485,6406957-6407062	AT2G14910.1  CDS  gene_syn T26I20.7, T26I20_7  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G14970.1); Has 495 Blast hits to 336 proteins in 81 species: Archae - 0; Bacteria - 243; Metazoa - 19; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink).  protein_id AT2G14910.1p  transcript_id AT2G14910.1  protein_id AT2G14910.1p  transcript_id AT2G14910.1  
At2g14920	chr2:006418199	0.0	W/6418199-6418733,6418770-6419236	AT2G14920.1  CDS  gene_syn ARABIDOPSIS THALIANA SULFOTRANSFERASE 4A, ATST4A, ST4A, SULFOTRANSFERASE 4A, T26I20.8, T26I20_8  gene ST4A  function Encodes a brassinosteroid sulfotransferase that may be involved in brassinosteroid inactivation. In vitro experiements show that this enzyme can act on a broad group of naturally occurring brassinosteroids, including the 24-epimers and (22R,23R)-28 homobrassinosteroids, that have an array of different side chains, though it shows a preference for (22R,23R)-28 homobrassinosteroids. ST4A is expressed in the roots and transcript levels fall in response to cytokinin treatment.  go_component cellular_component|GO:0005575||ND  go_process response to cytokinin stimulus|GO:0009735|17039368|IEP  go_process brassinosteroid metabolic process|GO:0016131|17039368|IDA  go_function sulfotransferase activity|GO:0008146||ISS  go_function brassinosteroid sulfotransferase activity|GO:0080118|17039368|IDA  product ST4A (SULFOTRANSFERASE 4A); brassinosteroid sulfotransferase/ sulfotransferase  note SULFOTRANSFERASE 4A (ST4A); FUNCTIONS IN: sulfotransferase activity, brassinosteroid sulfotransferase activity; INVOLVED IN: response to cytokinin stimulus, brassinosteroid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Sulfotransferase (InterPro:IPR000863); BEST Arabidopsis thaliana protein match is: ST4C (SULFOTRANSFERASE 4C); brassinosteroid sulfotransferase/ sulfotransferase (TAIR:AT1G13430.1); Has 2303 Blast hits to 2266 proteins in 146 species: Archae - 0; Bacteria - 168; Metazoa - 1449; Fungi - 1; Plants - 308; Viruses - 0; Other Eukaryotes - 377 (source: NCBI BLink).  protein_id AT2G14920.1p  transcript_id AT2G14920.1  protein_id AT2G14920.1p  transcript_id AT2G14920.1  
At2g14930	chr2:006422634	0.0	C/6422634-6426899	AT2G14930.1  mRNA_TE_gene  pseudo  gene_syn T26I20.9, T26I20_9  note Transposable element gene, copia-like retrotransposon family, has a 9.9e-255 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)  
At2g14935	chr2:006431471	0.0	W/6431471-6431528,6431660-6431826	AT2G14935.1  CDS  gene_syn LCR40, Low-molecular-weight cysteine-rich 40  gene LCR40  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR40 (Low-molecular-weight cysteine-rich 40)  note Low-molecular-weight cysteine-rich 40 (LCR40); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: LCR39 (Low-molecular-weight cysteine-rich 39) (TAIR:AT3G23167.1); Has 9 Blast hits to 9 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G14935.1p  transcript_id AT2G14935.1  protein_id AT2G14935.1p  transcript_id AT2G14935.1  
At2g14940	chr2:006435725	0.0	W/6435725-6438806	AT2G14940.1  mRNA_TE_gene  pseudo  gene_syn T26I20.10  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 3.1e-37 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)  
At2g14950	chr2:006447381	0.0	W/6447381-6449633	AT2G14950.1  mRNA_TE_gene  pseudo  gene_syn T26I20.11, T26I20_11  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 1.5e-57 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At2g14960	chr2:006453351	0.0	C/6453351-6453670,6453154-6453255,6451659-6453009	AT2G14960.1  CDS  gene_syn GH3.1, T26I20.12, T26I20_12  gene GH3.1  function encodes a protein similar to IAA-amido synthases. Lines carrying an insertion in this gene are hypersensitive to auxin.  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733|15659623|IMP  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product GH3.1  note GH3.1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: BRU6; indole-3-acetic acid amido synthetase (TAIR:AT4G37390.1); Has 838 Blast hits to 728 proteins in 111 species: Archae - 1; Bacteria - 265; Metazoa - 51; Fungi - 2; Plants - 220; Viruses - 0; Other Eukaryotes - 299 (source: NCBI BLink).  protein_id AT2G14960.1p  transcript_id AT2G14960.1  protein_id AT2G14960.1p  transcript_id AT2G14960.1  
At2g14970	chr2:006457721	0.0	C/6457721-6461341	AT2G14970.1  mRNA_TE_gene  pseudo  gene_syn T15J14.1, T15J14_1  note Transposable element gene, CACTA-like transposase family (Tnp1/En/Spm), has a 0. P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)  
At2g14980	chr2:006461672	0.0	C/6461672-6465118	AT2G14980.1  mRNA_TE_gene  pseudo  gene_syn T15J14.2, T15J14_2  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 1.2e-247 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At2g14990	chr2:006475058	0.0	W/6475058-6480183	AT2G14990.1  mRNA_TE_gene  pseudo  gene_syn T15J14.3  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 8.7e-37 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At2g15000	chr2:006482162	0.0	C/6482162-6482316,6481839-6481989	AT2G15000.4  CDS  gene_syn T15J14.4, T15J14_4  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34265.2); Has 59 Blast hits to 59 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G15000.4p  transcript_id AT2G15000.4  protein_id AT2G15000.4p  transcript_id AT2G15000.4  
At2g15000	chr2:006482162	0.0	C/6482162-6482316,6481839-6481989	AT2G15000.5  CDS  gene_syn T15J14.4, T15J14_4  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34265.2); Has 59 Blast hits to 59 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G15000.5p  transcript_id AT2G15000.5  protein_id AT2G15000.5p  transcript_id AT2G15000.5  
At2g15000	chr2:006482162	0.0	C/6482162-6482316,6481871-6481989,6481200-6481207	AT2G15000.1  CDS  gene_syn T15J14.4, T15J14_4  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34265.2); Has 50 Blast hits to 50 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G15000.1p  transcript_id AT2G15000.1  protein_id AT2G15000.1p  transcript_id AT2G15000.1  
At2g15000	chr2:006482162	0.0	C/6482162-6482316,6481871-6481989,6481637-6481656	AT2G15000.2  CDS  gene_syn T15J14.4, T15J14_4  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34265.1); Has 50 Blast hits to 50 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G15000.2p  transcript_id AT2G15000.2  protein_id AT2G15000.2p  transcript_id AT2G15000.2  
At2g15000	chr2:006482162	0.0	C/6482162-6482316,6481871-6481989,6481637-6481656	AT2G15000.3  CDS  gene_syn T15J14.4, T15J14_4  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34265.1); Has 50 Blast hits to 50 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G15000.3p  transcript_id AT2G15000.3  protein_id AT2G15000.3p  transcript_id AT2G15000.3  
At2g15010	chr2:006484422	0.0	W/6484422-6484653,6484737-6484814,6484904-6485001	AT2G15010.1  CDS  gene_syn T15J14.5, T15J14_5  function Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952|18674922|ISS  go_process defense response|GO:0006952||ISS  go_function toxin receptor binding|GO:0050827||ISS  product thionin, putative  note thionin, putative; FUNCTIONS IN: toxin receptor binding; INVOLVED IN: defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Thionin (InterPro:IPR001010); BEST Arabidopsis thaliana protein match is: THI2.2 (THIONIN 2.2); toxin receptor binding (TAIR:AT5G36910.1); Has 132 Blast hits to 132 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G15010.1p  transcript_id AT2G15010.1  protein_id AT2G15010.1p  transcript_id AT2G15010.1  
At2g15012	chr2:006486431	0.0	W/6486431-6486617	AT2G15012.1  pseudogenic_transcript  pseudo  function Pseudogene of AT4G00416; MBD3 (methyl-CpG-binding domain 3); DNA binding  
At2g15013	chr2:006486903	0.0	W/6486903-6487110	AT2G15013.1  pseudogenic_transcript  pseudo  function Pseudogene of AT4G00416; MBD3 (methyl-CpG-binding domain 3); DNA binding  
At2g15014	chr2:006487418	0.0	W/6487418-6487602	AT2G15014.1  pseudogenic_transcript  pseudo  function Pseudogene of AT4G00416; MBD3 (methyl-CpG-binding domain 3); DNA binding  
At2g15015	chr2:006487910	0.0	W/6487910-6488094	AT2G15015.1  pseudogenic_transcript  pseudo  function Pseudogene of AT4G00416; MBD3 (methyl-CpG-binding domain 3); DNA binding  
At2g15016	chr2:006488400	0.0	W/6488400-6488584	AT2G15016.1  pseudogenic_transcript  pseudo  function Pseudogene of AT4G00416; MBD3 (methyl-CpG-binding domain 3); DNA binding  
At2g15017	chr2:006488873	0.0	W/6488873-6489077	AT2G15017.1  pseudogenic_transcript  pseudo  function Pseudogene of AT4G00416; MBD3 (methyl-CpG-binding domain 3); DNA binding  
At2g15020	chr2:006491706	0.0	C/6491706-6493286	AT2G15020.1  CDS  gene_syn T15J14.6, T15J14_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64190.1); Has 50 Blast hits to 50 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G15020.1p  transcript_id AT2G15020.1  protein_id AT2G15020.1p  transcript_id AT2G15020.1  
At2g15025	chr2:006501147	0.0	C/6501147-6501704	AT2G15025.1  CDS  go_component beta-galactosidase complex|GO:0009341||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  product beta-galactosidase  note beta-galactosidase; FUNCTIONS IN: beta-galactosidase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: beta-galactosidase complex; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944); BEST Arabidopsis thaliana protein match is: beta-galactosidase (TAIR:AT5G35890.1); Has 26 Blast hits to 26 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G15025.1p  transcript_id AT2G15025.1  protein_id AT2G15025.1p  transcript_id AT2G15025.1  
At2g15029	chr2:006504070	0.0	C/6504070-6504171	AT2G15029.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G15029.1p  transcript_id AT2G15029.1  protein_id AT2G15029.1p  transcript_id AT2G15029.1  
At2g15030	chr2:006504367	0.0	W/6504367-6506172	AT2G15030.1  pseudogenic_transcript  pseudo  gene_syn T15J14.7, T15J14_7  note pseudogene, similar to LD40380p, blastp match of 31% identity and 2.1e-06 P-value to GP|20151643|gb|AAM11181.1||AY094828 LD40380p {Drosophila melanogaster}  
At2g15040	chr2:006507523	0.0	W/6507523-6508565	AT2G15040.1  pseudogenic_transcript  pseudo  gene_syn AtRLP18, Receptor Like Protein 18, T15J14.8, T15J14_8  gene AtRLP18  note pseudogene, disease resistance protein-related, low similarity to disease resistance protein Cf-2.1 (Lycopersicon pimpinellifolium) GI:1184075; contains Pfam profile PF00560: Leucine Rich Repeat; blastp match of 38% identity and 4.4e-96 P-value to GP|1184075|gb|AAC15779.1||U42444 Cf-2.1 {Lycopersicon pimpinellifolium}  
At2g15042	chr2:006510165	0.0	W/6510165-6510215,6510293-6510376,6510465-6510560,6510853-6510962,6511045-6512335	AT2G15042.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_function protein binding|GO:0005515||IEA  go_process biological_process|GO:0008150||ND  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP35 (Receptor Like Protein 35); kinase/ protein binding (TAIR:AT3G11080.1).  protein_id AT2G15042.1p  transcript_id AT2G15042.1  protein_id AT2G15042.1p  transcript_id AT2G15042.1  
At2g15045	chr2:006513694	0.0	C/6513694-6514467	AT2G15045.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to nucleic acid binding / ribonuclease H [Arabidopsis thaliana] (TAIR:AT4G08860.1); similar to Ribonuclease H [Medicago truncatula] (GB:ABE81233.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)  
At2g15050	chr2:006518888	0.0	W/6518888-6519225,6519879-6519888	AT2G15050.2  CDS  gene_syn LTP, T15J14.9, T15J14_9  gene LTP  function Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_function lipid binding|GO:0008289||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product LTP; lipid binding  note LTP; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: LP1; calmodulin binding (TAIR:AT2G38540.1); Has 837 Blast hits to 836 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 833; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G15050.2p  transcript_id AT2G15050.2  protein_id AT2G15050.2p  transcript_id AT2G15050.2  
At2g15050	chr2:006518888	0.0	W/6518888-6519246,6519879-6519888	AT2G15050.3  CDS  gene_syn LTP, T15J14.9, T15J14_9  gene LTP  function Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_function lipid binding|GO:0008289||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product LTP; lipid binding  note LTP; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: LP1; calmodulin binding (TAIR:AT2G38540.1); Has 834 Blast hits to 833 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 830; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G15050.3p  transcript_id AT2G15050.3  protein_id AT2G15050.3p  transcript_id AT2G15050.3  
At2g15050	chr2:006518888	0.0	W/6518888-6519259	AT2G15050.1  CDS  gene_syn LTP, T15J14.9, T15J14_9  gene LTP  function Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_function lipid binding|GO:0008289||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product LTP; lipid binding  note LTP; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: LP1; calmodulin binding (TAIR:AT2G38540.1); Has 834 Blast hits to 833 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 830; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G15050.1p  transcript_id AT2G15050.1  protein_id AT2G15050.1p  transcript_id AT2G15050.1  
At2g15060	chr2:006524754	0.0	C/6524754-6528513	AT2G15060.1  mRNA_TE_gene  pseudo  gene_syn T15J14.10, T15J14_10  note Transposable element gene, CACTA-like transposase family (Tnp1/En/Spm), has a 1.8e-63 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)  
At2g15070	chr2:006528825	0.0	C/6528825-6532381	AT2G15070.1  mRNA_TE_gene  pseudo  gene_syn T15J14.11, T15J14_11  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 8.4e-192 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At2g15080	chr2:006533764	0.0	W/6533764-6536715	AT2G15080.1  CDS  gene_syn AtRLP19, Receptor Like Protein 19, T15J14.12, T15J14_12  gene AtRLP19  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  go_function kinase activity|GO:0016301||ISS  product AtRLP19 (Receptor Like Protein 19); kinase/ protein binding  note Receptor Like Protein 19 (AtRLP19); FUNCTIONS IN: protein binding, kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP53 (Receptor Like Protein 53); kinase/ protein binding (TAIR:AT5G27060.1); Has 94078 Blast hits to 22943 proteins in 905 species: Archae - 51; Bacteria - 6935; Metazoa - 28349; Fungi - 1107; Plants - 49949; Viruses - 42; Other Eukaryotes - 7645 (source: NCBI BLink).  protein_id AT2G15080.1p  transcript_id AT2G15080.1  protein_id AT2G15080.1p  transcript_id AT2G15080.1  
At2g15080	chr2:006533764	0.0	W/6533764-6536715	AT2G15080.2  CDS  gene_syn AtRLP19, Receptor Like Protein 19, T15J14.12, T15J14_12  gene AtRLP19  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  go_function kinase activity|GO:0016301||ISS  product AtRLP19 (Receptor Like Protein 19); kinase/ protein binding  note Receptor Like Protein 19 (AtRLP19); FUNCTIONS IN: protein binding, kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP53 (Receptor Like Protein 53); kinase/ protein binding (TAIR:AT5G27060.1); Has 94078 Blast hits to 22943 proteins in 905 species: Archae - 51; Bacteria - 6935; Metazoa - 28349; Fungi - 1107; Plants - 49949; Viruses - 42; Other Eukaryotes - 7645 (source: NCBI BLink).  protein_id AT2G15080.2p  transcript_id AT2G15080.2  protein_id AT2G15080.2p  transcript_id AT2G15080.2  
At2g15090	chr2:006542336	0.0	W/6542336-6543781	AT2G15090.1  CDS  gene_syn 3-KETOACYL-COA SYNTHASE 8, KCS8, T15J14.13, T15J14_13  gene KCS8  function Encodes KCS8, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).  go_function catalytic activity|GO:0003824||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component endoplasmic reticulum|GO:0005783|18465198|IDA  go_process very-long-chain fatty acid metabolic process|GO:0000038|7734965|IMP  go_process response to osmotic stress|GO:0006970|18465198|IEP  go_process fatty acid elongation|GO:0030497|7734965|IMP  go_function acyltransferase activity|GO:0008415||ISS  product KCS8 (3-KETOACYL-COA SYNTHASE 8); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups  note 3-KETOACYL-COA SYNTHASE 8 (KCS8); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: fatty acid elongation, very-long-chain fatty acid metabolic process, response to osmotic stress; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038), Chalcone and stilbene synthases, C-terminal (InterPro:IPR012328); BEST Arabidopsis thaliana protein match is: KCS16 (3-KETOACYL-COA SYNTHASE 16); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups (TAIR:AT4G34250.1); Has 3065 Blast hits to 3056 proteins in 721 species: Archae - 0; Bacteria - 975; Metazoa - 0; Fungi - 18; Plants - 1952; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).  protein_id AT2G15090.1p  transcript_id AT2G15090.1  protein_id AT2G15090.1p  transcript_id AT2G15090.1  
At2g15100	chr2:006549381	0.0	W/6549381-6554330	AT2G15100.1  mRNA_TE_gene  pseudo  gene_syn T15J14.14, T15J14_14  note Transposable element gene, gypsy-like retrotransposon family, has a 4.0e-216 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At2g15110	chr2:006556982	0.0	C/6556982-6557168,6556652-6556885,6556338-6556473,6555878-6556182,6555683-6555810,6554847-6555608	AT2G15110.1  CDS  gene_syn T15J14.15, T15J14_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF601 (InterPro:IPR006736); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G46696.1).  protein_id AT2G15110.1p  transcript_id AT2G15110.1  protein_id AT2G15110.1p  transcript_id AT2G15110.1  
At2g15120	chr2:006557367	0.0	W/6557367-6558936	AT2G15120.1  pseudogenic_transcript  pseudo  gene_syn T15J14.16, T15J14_16  note pseudogene, disease-resistance family protein / fatty acid elongase-related, similar to fatty acid elongase 1 (FAE1) (Arabidopsis thaliana) GI:881615; similar to NtPRp27 (GI:5360263) (Nicotiana tabacum) similar to R 14 protein (GI:27764542) (Glycine max); contains Pfam profile PF04450: Plant Basic Secretory Protein; blastp match of 71% identity and 6.0e-20 P-value to GP|18674893|emb|CAD23312.1||AX358183 unnamed protein product {synthetic construct}  
At2g15128	chr2:006564104	0.0	W/6564104-6564316	AT2G15128.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G15128.1  
At2g15130	chr2:006565154	0.0	W/6565154-6565831	AT2G15130.1  CDS  gene_syn T15J14.17, T15J14_17  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_function molecular_function|GO:0003674||ND  product plant basic secretory protein (BSP) family protein  note plant basic secretory protein (BSP) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant Basic Secretory Protein (InterPro:IPR007541); BEST Arabidopsis thaliana protein match is: secretory protein, putative (TAIR:AT2G15220.1); Has 163 Blast hits to 163 proteins in 52 species: Archae - 0; Bacteria - 32; Metazoa - 0; Fungi - 37; Plants - 93; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G15130.1p  transcript_id AT2G15130.1  protein_id AT2G15130.1p  transcript_id AT2G15130.1  
At2g15130	chr2:006565397	0.0	W/6565397-6565831	AT2G15130.2  CDS  gene_syn T15J14.17, T15J14_17  go_process defense response|GO:0006952||ISS  go_function molecular_function|GO:0003674||ND  product plant basic secretory protein (BSP) family protein  note plant basic secretory protein (BSP) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; CONTAINS InterPro DOMAIN/s: Plant Basic Secretory Protein (InterPro:IPR007541); BEST Arabidopsis thaliana protein match is: secretory protein, putative (TAIR:AT2G15220.1); Has 154 Blast hits to 154 proteins in 52 species: Archae - 0; Bacteria - 32; Metazoa - 0; Fungi - 37; Plants - 84; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G15130.2p  transcript_id AT2G15130.2  protein_id AT2G15130.2p  transcript_id AT2G15130.2  
At2g15140	chr2:006566709	0.0	W/6566709-6571383	AT2G15140.1  mRNA_TE_gene  pseudo  gene_syn F15A23.12, F15A23_12  note Transposable element gene, pseudogene, Ulp1 protease family, contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain; similar to At1g32840, At4g04010, At2g06430, At2g04980, At2g14130, At3g44500, At2g15190, At3g47260, At5g34900, At3g29210, At2g02210, At3g32900  
At2g15145	chr2:006572575	0.0	W/6572575-6573471	AT2G15145.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to P0458A05.18, blastp match of 30% identity and 2.6e-10 P-value to GP|11875196|dbj|BAB19409.1||AP002870 P0458A05.18 {Oryza sativa (japonica cultivar-group)}  
At2g15150	chr2:006574273	0.0	C/6574273-6576991	AT2G15150.1  mRNA_TE_gene  pseudo  gene_syn F15A23.11, F15A23_11  note Transposable element gene, Mutator-like transposase family, has a 1.8e-84 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g15160	chr2:006579903	0.0	C/6579903-6581815	AT2G15160.1  mRNA_TE_gene  pseudo  gene_syn F15A23.10  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 1.8e-86 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At2g15170	chr2:006587660	0.0	W/6587660-6587968	AT2G15170.1  CDS  gene_syn F15A23.9, F15A23_9  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant Basic Secretory Protein (InterPro:IPR007541); BEST Arabidopsis thaliana protein match is: plant basic secretory protein (BSP) family protein (TAIR:AT2G15130.1); Has 73 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G15170.1p  transcript_id AT2G15170.1  protein_id AT2G15170.1p  transcript_id AT2G15170.1  
At2g15180	chr2:006588743	0.0	C/6588743-6590167	AT2G15180.1  CDS  gene_syn F15A23.8, F15A23_8  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc knuckle (CCHC-type) family protein  note zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: nucleic acid binding / zinc ion binding (TAIR:AT3G43470.1); Has 53 Blast hits to 50 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 46; Viruses - 1; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G15180.1p  transcript_id AT2G15180.1  protein_id AT2G15180.1p  transcript_id AT2G15180.1  
At2g15185	chr2:006591473	0.0	C/6591473-6591544,6590876-6591379	AT2G15185.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product zinc knuckle (CCHC-type) protein-related  note zinc knuckle (CCHC-type) protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: nucleic acid binding / zinc ion binding (TAIR:AT3G43470.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G15185.1p  transcript_id AT2G15185.1  protein_id AT2G15185.1p  transcript_id AT2G15185.1  
At2g15190	chr2:006592908	0.0	W/6592908-6597558	AT2G15190.1  mRNA_TE_gene  pseudo  gene_syn F15A23.7, F15A23_7  note Transposable element gene, pseudogene, Ulp1 protease family, contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain; similar to At1g32840, At4g04010, At2g06430, At2g15140, At2g04980, At2g14130, At3g44500, At3g47260, At5g34900, At3g29210, At2g02210, At3g32900  
At2g15200	chr2:006599310	0.0	W/6599310-6603242	AT2G15200.1  mRNA_TE_gene  pseudo  gene_syn F15A23.6, F15A23_6  note Transposable element gene, pseudogene, hypothetical protein, similar to At2g04970, At1g32830, At2g14140, At3g30450, At4g03990, At5g34895, At3g47270, At2g02200  
At2g15210	chr2:006604065	0.0	C/6604065-6606755	AT2G15210.1  mRNA_TE_gene  pseudo  gene_syn F15A23.5, F15A23_5  note Transposable element gene, Mutator-like transposase family, has a 7.6e-86 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g15220	chr2:006608689	0.0	W/6608689-6609366	AT2G15220.1  CDS  gene_syn F15A23.4, F15A23_4  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  product secretory protein, putative  note secretory protein, putative; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Plant Basic Secretory Protein (InterPro:IPR007541); BEST Arabidopsis thaliana protein match is: plant basic secretory protein (BSP) family protein (TAIR:AT2G15130.1); Has 160 Blast hits to 160 proteins in 52 species: Archae - 0; Bacteria - 30; Metazoa - 0; Fungi - 41; Plants - 88; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G15220.1p  transcript_id AT2G15220.1  protein_id AT2G15220.1p  transcript_id AT2G15220.1  
At2g15230	chr2:006612666	0.0	W/6612666-6612809,6612903-6613007,6613104-6613244,6613547-6613657,6613737-6613880,6613953-6613993,6614085-6614161,6614645-6614740,6614882-6615204	AT2G15230.1  CDS  gene_syn ATLIP1, Arabidopsis thaliana lipase 1, F15A23.3, F15A23_3  gene ATLIP1  function Lipase active on medium and short chain triacylglycerols, but not on phospho- or galactolipids. Active between pH4 and 7 with an optimum at pH6. Knock-out mutant has not obvious phenotype. Predicted to be extracellular.  go_component extracellular space|GO:0005615|16226259|TAS  go_process seed germination|GO:0009845|16226259|IMP  go_function phospholipase activity|GO:0004620|16226259|IDA  go_function triacylglycerol lipase activity|GO:0004806|16226259|IDA  go_function hydrolase activity|GO:0016787||ISS  go_function galactolipase activity|GO:0047714|16226259|IDA  product ATLIP1 (Arabidopsis thaliana lipase 1); galactolipase/ hydrolase/ phospholipase/ triacylglycerol lipase  note Arabidopsis thaliana lipase 1 (ATLIP1); FUNCTIONS IN: hydrolase activity, galactolipase activity, triacylglycerol lipase activity, phospholipase activity; INVOLVED IN: seed germination; LOCATED IN: extracellular space; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: AB-hydrolase associated lipase region (InterPro:IPR006693), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1); catalytic (TAIR:AT5G14180.1); Has 1543 Blast hits to 1510 proteins in 176 species: Archae - 0; Bacteria - 92; Metazoa - 1102; Fungi - 186; Plants - 84; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT2G15230.1p  transcript_id AT2G15230.1  protein_id AT2G15230.1p  transcript_id AT2G15230.1  
At2g15240	chr2:006618773	0.0	C/6618773-6618862,6618259-6618326,6617813-6617838,6617421-6617511,6617223-6617318,6616787-6616855,6616528-6616586,6616300-6616422,6616134-6616205,6615980-6616044	AT2G15240.1  CDS  gene_syn F15A23.2, F15A23_2  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product UNC-50 family protein  note UNC-50 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UNC-50 (InterPro:IPR007881); Has 239 Blast hits to 239 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 129; Fungi - 63; Plants - 24; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT2G15240.1p  transcript_id AT2G15240.1  protein_id AT2G15240.1p  transcript_id AT2G15240.1  
At2g15250	chr2:006619688	0.0	C/6619688-6624973	AT2G15250.1  mRNA_TE_gene  pseudo  gene_syn F27O10.10  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.6e-34 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At2g15260	chr2:006630528	0.0	W/6630528-6630561,6630654-6631073,6631442-6631614,6631708-6631763,6632246-6632532,6633890-6634008	AT2G15260.1  CDS  gene_syn F27O10.9, F27O10_9  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: transcription factor, putative / zinc finger (C3HC4 type RING finger) family protein (TAIR:AT3G05545.1); Has 85 Blast hits to 83 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 6; Plants - 48; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT2G15260.1p  transcript_id AT2G15260.1  protein_id AT2G15260.1p  transcript_id AT2G15260.1  
At2g15270	chr2:006637967	0.0	W/6637967-6638218,6638920-6639252	AT2G15270.1  CDS  gene_syn F27O10.8, F27O10_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1168 (InterPro:IPR009548); Has 2059 Blast hits to 1352 proteins in 169 species: Archae - 0; Bacteria - 30; Metazoa - 987; Fungi - 240; Plants - 61; Viruses - 3; Other Eukaryotes - 738 (source: NCBI BLink).  protein_id AT2G15270.1p  transcript_id AT2G15270.1  protein_id AT2G15270.1p  transcript_id AT2G15270.1  
At2g15271	chr2:006639457	0.0	C/6639457-6639868	AT2G15271.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G49200; WD-40 repeat family protein / zfwd4 protein (ZFWD4)  
At2g15280	chr2:006640191	0.0	W/6640191-6640230,6640322-6640502,6640811-6640952,6641030-6641099,6641242-6641414	AT2G15280.1  CDS  gene_syn F27O10.7, F27O10_7  go_component endoplasmic reticulum|GO:0005783||IEA  go_component endoplasmic reticulum|GO:0005783||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product reticulon family protein (RTNLB10)  note reticulon family protein (RTNLB10); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: reticulon family protein (RTNLB11) (TAIR:AT3G19460.1); Has 858 Blast hits to 858 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 589; Fungi - 2; Plants - 255; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT2G15280.1p  transcript_id AT2G15280.1  protein_id AT2G15280.1p  transcript_id AT2G15280.1  
At2g15280	chr2:006640191	0.0	W/6640191-6640230,6640322-6640502,6640811-6640952,6641289-6641414	AT2G15280.2  CDS  gene_syn F27O10.7, F27O10_7  go_component endoplasmic reticulum|GO:0005783||IEA  go_component endoplasmic reticulum|GO:0005783||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product reticulon family protein (RTNLB10)  note reticulon family protein (RTNLB10); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: reticulon family protein (RTNLB11) (TAIR:AT3G19460.1); Has 231 Blast hits to 231 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 231; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G15280.2p  transcript_id AT2G15280.2  protein_id AT2G15280.2p  transcript_id AT2G15280.2  
At2g15290	chr2:006643697	0.0	C/6643697-6644011,6643186-6643443,6642710-6642913,6642512-6642625	AT2G15290.1  CDS  gene_syn ATTIC21, CHLOROPLAST IMPORT APPARATUS 5, CIA5, F27O10.6, F27O10_6, PERMEASE IN CHLOROPLASTS 1, PIC1, TIC21, TRANSLOCON AT INNER MEMBRANE OF CHLOROPLASTS 21  gene TIC21  function Encodes a protein located in the chloroplast inner envelope. The study of mutant defective in the gene product suggests that the protein is involved in the translocation of protein across the envelope membrane into the chloroplast stroma.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast inner membrane|GO:0009706|16891400|IDA  go_component chloroplast envelope|GO:0009941|17337631|IDA  go_component Tic complex|GO:0031897|16891400|IPI  go_process cellular metal ion homeostasis|GO:0006875|17337631|IMP  go_process protein import into chloroplast stroma|GO:0045037|16891400|IMP  go_function iron ion transmembrane transporter activity|GO:0005381|17337631|IGI  go_function copper uptake transmembrane transporter activity|GO:0015088|17337631|IGI  go_function protein homodimerization activity|GO:0042803|16891400|IPI  product TIC21 (TRANSLOCON AT INNER MEMBRANE OF CHLOROPLASTS 21); copper uptake transmembrane transporter/ iron ion transmembrane transporter/ protein homodimerization  note TRANSLOCON AT INNER MEMBRANE OF CHLOROPLASTS 21 (TIC21); FUNCTIONS IN: copper uptake transmembrane transporter activity, protein homodimerization activity, iron ion transmembrane transporter activity; INVOLVED IN: protein import into chloroplast stroma, cellular metal ion homeostasis; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope, Tic complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 247 Blast hits to 247 proteins in 62 species: Archae - 0; Bacteria - 120; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).  protein_id AT2G15290.1p  transcript_id AT2G15290.1  protein_id AT2G15290.1p  transcript_id AT2G15290.1  
At2g15292	chr2:006644281	0.0	C/6644281-6645533	AT2G15292.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G15292.1  
At2g15300	chr2:006649630	0.0	W/6649630-6651313,6651460-6652010	AT2G15300.1  CDS  gene_syn F27O10.5, F27O10_5  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT4G34220.1); Has 81277 Blast hits to 59367 proteins in 1783 species: Archae - 48; Bacteria - 5304; Metazoa - 24969; Fungi - 3305; Plants - 37987; Viruses - 277; Other Eukaryotes - 9387 (source: NCBI BLink).  protein_id AT2G15300.1p  transcript_id AT2G15300.1  protein_id AT2G15300.1p  transcript_id AT2G15300.1  
At2g15310	chr2:006653947	0.0	W/6653947-6654094,6654436-6654506,6654596-6654715,6654813-6654931,6655028-6655187	AT2G15310.1  CDS  gene_syn ADP-ribosylation factor B1A, ATARFB1A, F27O10.4, F27O10_4  gene ATARFB1A  function A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor (GI:861205) (Chlamydomonas reinhardtii), other ARFs and ARF-like proteins.  go_component intracellular|GO:0005622||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function GTP binding|GO:0005525|12644670|ISS  product ATARFB1A (ADP-ribosylation factor B1A); GTP binding  note ADP-ribosylation factor B1A (ATARFB1A); FUNCTIONS IN: GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: intracellular; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ATARFA1E (ADP-ribosylation factor A1E); GTP binding / phospholipase activator/ protein binding (TAIR:AT3G62290.1); Has 13428 Blast hits to 13421 proteins in 469 species: Archae - 10; Bacteria - 24; Metazoa - 7469; Fungi - 1510; Plants - 1416; Viruses - 3; Other Eukaryotes - 2996 (source: NCBI BLink).  protein_id AT2G15310.1p  transcript_id AT2G15310.1  protein_id AT2G15310.1p  transcript_id AT2G15310.1  
At2g15318	chr2:006664760	0.0	W/6664760-6665029	AT2G15318.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G15318.1p  transcript_id AT2G15318.1  protein_id AT2G15318.1p  transcript_id AT2G15318.1  
At2g15320	chr2:006666527	0.0	C/6666527-6667675	AT2G15320.1  CDS  gene_syn F27O10.3, F27O10_3  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT5G66330.1); Has 47111 Blast hits to 17344 proteins in 728 species: Archae - 19; Bacteria - 1932; Metazoa - 15278; Fungi - 422; Plants - 26535; Viruses - 0; Other Eukaryotes - 2925 (source: NCBI BLink).  protein_id AT2G15320.1p  transcript_id AT2G15320.1  protein_id AT2G15320.1p  transcript_id AT2G15320.1  
At2g15325	chr2:006670004	0.0	C/6670004-6670356,6669864-6669876	AT2G15325.1  CDS  gene_syn F27O10.2, F27O10_2  function Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_function lipid binding|GO:0008289||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: LTP4 (LIPID TRANSFER PROTEIN 4); lipid binding (TAIR:AT5G59310.1); Has 674 Blast hits to 674 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 672; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G15325.1p  transcript_id AT2G15325.1  protein_id AT2G15325.1p  transcript_id AT2G15325.1  
At2g15327	chr2:006672681	0.0	C/6672681-6672775,6672282-6672600,6672028-6672189	AT2G15327.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G15327.1p  transcript_id AT2G15327.1  protein_id AT2G15327.1p  transcript_id AT2G15327.1  
At2g15330	chr2:006672892	0.0	C/6672892-6673989	AT2G15330.1  mRNA_TE_gene  pseudo  gene_syn F27O10.1, F27O10_1  note Transposable element gene, pseudogene, hypothetical protein, similar to reverse transcriptase  
At2g15340	chr2:006677339	0.0	W/6677339-6677698	AT2G15340.1  CDS  gene_syn F26H6.14, F26H6_14  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; Has 1249 Blast hits to 625 proteins in 136 species: Archae - 2; Bacteria - 290; Metazoa - 389; Fungi - 212; Plants - 175; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink).  protein_id AT2G15340.1p  transcript_id AT2G15340.1  protein_id AT2G15340.1p  transcript_id AT2G15340.1  
At2g15345	chr2:006684502	0.0	C/6684502-6684867	AT2G15345.1  CDS  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product enzyme inhibitor/ pectinesterase  note enzyme inhibitor/ pectinesterase; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT3G17230.1); Has 16 Blast hits to 15 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G15345.1p  transcript_id AT2G15345.1  protein_id AT2G15345.1p  transcript_id AT2G15345.1  
At2g15350	chr2:006688140	0.0	C/6688140-6689462	AT2G15350.1  CDS  gene_syn ATFUT10, F26H6.13, F26H6_13, FUCOSYLTRANSFERASE 10, FUT10  gene FUT10  function member of Glycosyltransferase Family- 37  go_component membrane|GO:0016020||IEA  go_process cell wall biogenesis|GO:0042546||IEA  go_function fucosyltransferase activity|GO:0008417|11743104|ISS  go_function fucosyltransferase activity|GO:0008417||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product FUT10 (FUCOSYLTRANSFERASE 10); fucosyltransferase/ transferase, transferring glycosyl groups  note FUCOSYLTRANSFERASE 10 (FUT10); FUNCTIONS IN: transferase activity, transferring glycosyl groups, fucosyltransferase activity; INVOLVED IN: cell wall biogenesis; LOCATED IN: membrane; EXPRESSED IN: seedling, stem, cauline leaf, root; CONTAINS InterPro DOMAIN/s: Xyloglucan fucosyltransferase (InterPro:IPR004938); BEST Arabidopsis thaliana protein match is: FUT5; fucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT2G15370.1); Has 205 Blast hits to 200 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 202; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G15350.1p  transcript_id AT2G15350.1  protein_id AT2G15350.1p  transcript_id AT2G15350.1  
At2g15360	chr2:006694787	0.0	C/6694787-6695029	AT2G15360.1  CDS  gene_syn F26H6.12, F26H6_12  go_component membrane|GO:0016020||IEA  go_process cell wall biogenesis|GO:0042546||IEA  go_function galactoside 2-alpha-L-fucosyltransferase activity|GO:0008107||IEA  product galactoside 2-alpha-L-fucosyltransferase  note galactoside 2-alpha-L-fucosyltransferase; FUNCTIONS IN: galactoside 2-alpha-L-fucosyltransferase activity; INVOLVED IN: cell wall biogenesis; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Xyloglucan fucosyltransferase (InterPro:IPR004938); BEST Arabidopsis thaliana protein match is: FUT4; fucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT2G15390.2); Has 28 Blast hits to 27 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G15360.1p  transcript_id AT2G15360.1  protein_id AT2G15360.1p  transcript_id AT2G15360.1  
At2g15370	chr2:006699633	0.0	C/6699633-6699783,6698100-6699550	AT2G15370.1  CDS  gene_syn F26H6.11, F26H6_11, FUCOSYLTRANSFERASE 5, FUT5  gene FUT5  function Predicted fucosyltransferase, based on similarity to FUT1, but not functionally redundant with FUT1.  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process cell wall biogenesis|GO:0042546||IEA  go_function fucosyltransferase activity|GO:0008417|11743104|ISS  go_function fucosyltransferase activity|GO:0008417||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product FUT5; fucosyltransferase/ transferase, transferring glycosyl groups  note FUT5; FUNCTIONS IN: transferase activity, transferring glycosyl groups, fucosyltransferase activity; INVOLVED IN: cell wall biogenesis; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: cauline leaf, root, flower, seed; CONTAINS InterPro DOMAIN/s: Xyloglucan fucosyltransferase (InterPro:IPR004938); BEST Arabidopsis thaliana protein match is: FUT4; fucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT2G15390.2); Has 204 Blast hits to 199 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 202; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G15370.1p  transcript_id AT2G15370.1  protein_id AT2G15370.1p  transcript_id AT2G15370.1  
At2g15380	chr2:006700881	0.0	W/6700881-6706706	AT2G15380.1  mRNA_TE_gene  pseudo  gene_syn F26H6.10, F26H6_10  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.1e-29 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At2g15390	chr2:006709345	0.0	C/6709345-6710856	AT2G15390.1  CDS  gene_syn F26H6.9, F26H6_9, FUT4, atfut4  gene FUT4  function Predicted fucosyltransferase, based on similarity to FUT1, but not functionally redundant with FUT1.  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process cell wall biogenesis|GO:0042546||IEA  go_function fucosyltransferase activity|GO:0008417|11743104|ISS  go_function fucosyltransferase activity|GO:0008417||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product FUT4; fucosyltransferase/ transferase, transferring glycosyl groups  note FUT4; FUNCTIONS IN: transferase activity, transferring glycosyl groups, fucosyltransferase activity; INVOLVED IN: cell wall biogenesis; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan fucosyltransferase (InterPro:IPR004938); BEST Arabidopsis thaliana protein match is: FUT5; fucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT2G15370.1); Has 205 Blast hits to 200 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 202; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G15390.1p  transcript_id AT2G15390.1  protein_id AT2G15390.1p  transcript_id AT2G15390.1  
At2g15390	chr2:006710882	0.0	C/6710882-6711044,6709345-6710789	AT2G15390.2  CDS  gene_syn F26H6.9, F26H6_9, FUT4, atfut4  gene FUT4  function Predicted fucosyltransferase, based on similarity to FUT1, but not functionally redundant with FUT1.  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process cell wall biogenesis|GO:0042546||IEA  go_function fucosyltransferase activity|GO:0008417|11743104|ISS  go_function fucosyltransferase activity|GO:0008417||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product FUT4; fucosyltransferase/ transferase, transferring glycosyl groups  note FUT4; FUNCTIONS IN: transferase activity, transferring glycosyl groups, fucosyltransferase activity; INVOLVED IN: cell wall biogenesis; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan fucosyltransferase (InterPro:IPR004938); BEST Arabidopsis thaliana protein match is: FUT5; fucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT2G15370.1); Has 205 Blast hits to 200 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 202; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G15390.2p  transcript_id AT2G15390.2  protein_id AT2G15390.2p  transcript_id AT2G15390.2  
At2g15400	chr2:006713022	0.0	W/6713022-6713470,6713660-6713897,6714114-6714386	AT2G15400.1  CDS  gene_syn F26H6.8, F26H6_8, NRPE3B, RBP36B  gene NRPE3B  function Non-catalytic subunit of Nuclear DNA-dependent RNA polymerase V; homologous to budding yeast RPB3 and the E. coli RNA polymerase alpha subunit. A closely related paralog, At2g15430 can substitute for At2g15400 in the context of Pol V and encodes the equivalent subunit of Pol II and Pol IV.  go_process transcription|GO:0006350||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_component DNA-directed RNA polymerase II, core complex|GO:0005665|19110459|IPI  go_component DNA-directed RNA polymerase V complex|GO:0080137|19110459|IPI  go_process transcription|GO:0006350||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product NRPE3B; DNA binding / DNA-directed RNA polymerase/ protein dimerization  note NRPE3B; FUNCTIONS IN: DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: DNA-directed RNA polymerase V complex, DNA-directed RNA polymerase II, core complex; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, insert (InterPro:IPR011262), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RpoA/D/Rpb3-type (InterPro:IPR011263), DNA-directed RNA polymerase, 30-40 kDa subunit, conserved site (InterPro:IPR001514), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); BEST Arabidopsis thaliana protein match is: NRPB3; DNA binding / DNA-directed RNA polymerase/ protein dimerization (TAIR:AT2G15430.1); Has 1020 Blast hits to 1019 proteins in 246 species: Archae - 151; Bacteria - 0; Metazoa - 239; Fungi - 224; Plants - 68; Viruses - 0; Other Eukaryotes - 338 (source: NCBI BLink).  protein_id AT2G15400.1p  transcript_id AT2G15400.1  protein_id AT2G15400.1p  transcript_id AT2G15400.1  
At2g15400	chr2:006713022	0.0	W/6713022-6713470,6713660-6713918	AT2G15400.2  CDS  gene_syn F26H6.8, F26H6_8, NRPE3B, RBP36B  gene NRPE3B  function Non-catalytic subunit of Nuclear DNA-dependent RNA polymerase V; homologous to budding yeast RPB3 and the E. coli RNA polymerase alpha subunit. A closely related paralog, At2g15430 can substitute for At2g15400 in the context of Pol V and encodes the equivalent subunit of Pol II and Pol IV.  go_process transcription|GO:0006350||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_component DNA-directed RNA polymerase II, core complex|GO:0005665|19110459|IPI  go_component DNA-directed RNA polymerase V complex|GO:0080137|19110459|IPI  go_process transcription|GO:0006350||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product NRPE3B; DNA binding / DNA-directed RNA polymerase/ protein dimerization  note NRPE3B; FUNCTIONS IN: DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: DNA-directed RNA polymerase V complex, DNA-directed RNA polymerase II, core complex; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, insert (InterPro:IPR011262), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RpoA/D/Rpb3-type (InterPro:IPR011263), DNA-directed RNA polymerase, 30-40 kDa subunit, conserved site (InterPro:IPR001514), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); BEST Arabidopsis thaliana protein match is: NRPB3; DNA binding / DNA-directed RNA polymerase/ protein dimerization (TAIR:AT2G15430.1); Has 1005 Blast hits to 1004 proteins in 245 species: Archae - 149; Bacteria - 0; Metazoa - 238; Fungi - 224; Plants - 67; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink).  protein_id AT2G15400.2p  transcript_id AT2G15400.2  protein_id AT2G15400.2p  transcript_id AT2G15400.2  
At2g15410	chr2:006717778	0.0	W/6717778-6723519	AT2G15410.1  mRNA_TE_gene  pseudo  gene_syn F26H6.7, F26H6_7  note Transposable element gene, gypsy-like retrotransposon family, has a 4.1e-217 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At2g15420	chr2:006728157	0.0	C/6728157-6728183,6727769-6727790,6726102-6727724,6725911-6726027,6725229-6725779,6724812-6725128,6724545-6724732,6723948-6723976	AT2G15420.1  CDS  gene_syn F26H6.6, F26H6_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product myosin heavy chain-related  note myosin heavy chain-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT3G42060.1); Has 184 Blast hits to 180 proteins in 54 species: Archae - 7; Bacteria - 15; Metazoa - 57; Fungi - 7; Plants - 67; Viruses - 6; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT2G15420.1p  transcript_id AT2G15420.1  protein_id AT2G15420.1p  transcript_id AT2G15420.1  
At2g15430	chr2:006733661	0.0	W/6733661-6734109,6734364-6734601,6735210-6735482	AT2G15430.1  CDS  gene_syn F26H6.5, F26H6_5, NRPB3, NRPD3, NRPE3A, RBP36A, RPB35.5A  gene NRPB3  function Non-catalytic subunit of nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB3 and the E. coli RNA polymerase alpha subunit. A closely related paralog, encoded by At2g15400, can substitute for At2g15430 in the context of Pol V.  go_process transcription|GO:0006350||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_component DNA-directed RNA polymerase IV complex|GO:0000418|19110459|IPI  go_component nucleus|GO:0005634|15610358|IDA  go_component DNA-directed RNA polymerase II, core complex|GO:0005665|19110459|IPI  go_component nucleolus|GO:0005730|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component DNA-directed RNA polymerase V complex|GO:0080137|19110459|IPI  go_process transcription|GO:0006350||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product NRPB3; DNA binding / DNA-directed RNA polymerase/ protein dimerization  note NRPB3; FUNCTIONS IN: DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: in 6 components; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, insert (InterPro:IPR011262), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RpoA/D/Rpb3-type (InterPro:IPR011263), DNA-directed RNA polymerase, 30-40 kDa subunit, conserved site (InterPro:IPR001514), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); BEST Arabidopsis thaliana protein match is: NRPE3B; DNA binding / DNA-directed RNA polymerase/ protein dimerization (TAIR:AT2G15400.1); Has 1026 Blast hits to 1026 proteins in 246 species: Archae - 151; Bacteria - 0; Metazoa - 239; Fungi - 224; Plants - 68; Viruses - 0; Other Eukaryotes - 344 (source: NCBI BLink).  protein_id AT2G15430.1p  transcript_id AT2G15430.1  protein_id AT2G15430.1p  transcript_id AT2G15430.1  
At2g15440	chr2:006743792	0.0	C/6743792-6744781	AT2G15440.1  CDS  gene_syn F26H6.4, F26H6_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579, plant (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G67210.1); Has 161 Blast hits to 161 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 152; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT2G15440.1p  transcript_id AT2G15440.1  protein_id AT2G15440.1p  transcript_id AT2G15440.1  
At2g15450	chr2:006747536	0.0	W/6747536-6747679,6747882-6748193,6748401-6748925,6749023-6749256	AT2G15450.1  CDS  gene_syn F26H6.3, F26H6_3  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT2G15470.1); Has 2414 Blast hits to 2405 proteins in 312 species: Archae - 2; Bacteria - 476; Metazoa - 8; Fungi - 974; Plants - 883; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT2G15450.1p  transcript_id AT2G15450.1  protein_id AT2G15450.1p  transcript_id AT2G15450.1  
At2g15460	chr2:006750934	0.0	W/6750934-6751077,6751280-6751591,6751798-6752322,6752420-6752647	AT2G15460.1  CDS  gene_syn F26H6.2, F26H6_2  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT2G15450.1); Has 2401 Blast hits to 2393 proteins in 303 species: Archae - 2; Bacteria - 461; Metazoa - 8; Fungi - 974; Plants - 884; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT2G15460.1p  transcript_id AT2G15460.1  protein_id AT2G15460.1p  transcript_id AT2G15460.1  
At2g15470	chr2:006754330	0.0	W/6754330-6754473,6754676-6754987,6755196-6755720,6755818-6756051	AT2G15470.1  CDS  gene_syn F26H6.16  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Parallel beta-helix repeat (InterPro:IPR006626), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT2G15450.1); Has 2411 Blast hits to 2402 proteins in 304 species: Archae - 2; Bacteria - 464; Metazoa - 8; Fungi - 980; Plants - 883; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT2G15470.1p  transcript_id AT2G15470.1  protein_id AT2G15470.1p  transcript_id AT2G15470.1  
At2g15480	chr2:006758817	0.0	W/6758817-6759807,6759989-6760452	AT2G15480.1  CDS  gene_syn UDP-glucosyl transferase 73B5, UGT73B5  gene UGT73B5  go_component endomembrane system|GO:0012505||IEA  go_process response to other organism|GO:0051707|16306146|IEP  go_process response to other organism|GO:0051707|16306146|IMP  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function UDP-glucosyltransferase activity|GO:0035251|18702669|IDA  go_function quercetin 3-O-glucosyltransferase activity|GO:0080043|15352060|IDA  product UGT73B5 (UDP-glucosyl transferase 73B5); UDP-glucosyltransferase/ UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring glycosyl groups  note UDP-glucosyl transferase 73B5 (UGT73B5); FUNCTIONS IN: quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT73B4 (UDP-GLYCOSYLTRANSFERASE 73B4); UDP-glucosyltransferase/ UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ quercetin 7-O-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT2G15490.1); Has 3988 Blast hits to 3951 proteins in 310 species: Archae - 0; Bacteria - 103; Metazoa - 1013; Fungi - 11; Plants - 2723; Viruses - 114; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT2G15480.1p  transcript_id AT2G15480.1  protein_id AT2G15480.1p  transcript_id AT2G15480.1  
At2g15490	chr2:006761750	0.0	W/6761750-6762313,6763150-6763398	AT2G15490.2  CDS  gene_syn UDP-GLYCOSYLTRANSFERASE 73B4, UGT73B4  gene UGT73B4  go_component endomembrane system|GO:0012505||IEA  go_process response to other organism|GO:0051707|16306146|IEP  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function UDP-glucosyltransferase activity|GO:0035251|18702669|IDA  go_function quercetin 3-O-glucosyltransferase activity|GO:0080043|15352060|IDA  go_function quercetin 7-O-glucosyltransferase activity|GO:0080044|15352060|IDA  product UGT73B4 (UDP-GLYCOSYLTRANSFERASE 73B4); UDP-glucosyltransferase/ UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ quercetin 7-O-glucosyltransferase/ transferase, transferring glycosyl groups  note UDP-GLYCOSYLTRANSFERASE 73B4 (UGT73B4); FUNCTIONS IN: quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT73B5 (UDP-glucosyl transferase 73B5); UDP-glucosyltransferase/ UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT2G15480.1); Has 1385 Blast hits to 1083 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1384; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G15490.2p  transcript_id AT2G15490.2  protein_id AT2G15490.2p  transcript_id AT2G15490.2  
At2g15490	chr2:006761750	0.0	W/6761750-6762731,6762926-6763398	AT2G15490.1  CDS  gene_syn UDP-GLYCOSYLTRANSFERASE 73B4, UGT73B4  gene UGT73B4  go_component endomembrane system|GO:0012505||IEA  go_process response to other organism|GO:0051707|16306146|IEP  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function UDP-glucosyltransferase activity|GO:0035251|18702669|IDA  go_function quercetin 3-O-glucosyltransferase activity|GO:0080043|15352060|IDA  go_function quercetin 7-O-glucosyltransferase activity|GO:0080044|15352060|IDA  product UGT73B4 (UDP-GLYCOSYLTRANSFERASE 73B4); UDP-glucosyltransferase/ UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ quercetin 7-O-glucosyltransferase/ transferase, transferring glycosyl groups  note UDP-GLYCOSYLTRANSFERASE 73B4 (UGT73B4); FUNCTIONS IN: quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT73B5 (UDP-glucosyl transferase 73B5); UDP-glucosyltransferase/ UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT2G15480.1); Has 4019 Blast hits to 3981 proteins in 305 species: Archae - 0; Bacteria - 91; Metazoa - 1079; Fungi - 12; Plants - 2718; Viruses - 98; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT2G15490.1p  transcript_id AT2G15490.1  protein_id AT2G15490.1p  transcript_id AT2G15490.1  
At2g15500	chr2:006763707	0.0	W/6763707-6763790,6763939-6764087,6764262-6764297,6764369-6764407,6764661-6764751	AT2G15500.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: PAB2 (POLY(A) BINDING 2); RNA binding / translation initiation factor (TAIR:AT4G34110.1); Has 73 Blast hits to 73 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 11; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G15500.1p  transcript_id AT2G15500.1  protein_id AT2G15500.1p  transcript_id AT2G15500.1  
At2g15510	chr2:006766622	0.0	C/6766622-6770676	AT2G15510.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 3.0e-20 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)  
At2g15520	chr2:006770784	0.0	C/6770784-6772235	AT2G15520.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to zinc finger protein, putative [Arabidopsis thaliana] (TAIR:AT3G24680.1); similar to 80C09_29 [Brassica rapa subsp. pekinensis] (GB:AAZ41840.1)  
At2g15530	chr2:006774150	0.0	W/6774150-6775826,6776250-6776300,6776429-6776527,6776603-6776755,6776934-6777068	AT2G15530.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G34040.1); Has 6562 Blast hits to 5757 proteins in 228 species: Archae - 0; Bacteria - 42; Metazoa - 2345; Fungi - 482; Plants - 2102; Viruses - 25; Other Eukaryotes - 1566 (source: NCBI BLink).  protein_id AT2G15530.1p  transcript_id AT2G15530.1  protein_id AT2G15530.1p  transcript_id AT2G15530.1  
At2g15530	chr2:006774150	0.0	W/6774150-6775826,6776250-6776300,6776429-6776527,6776603-6776755,6776934-6777068	AT2G15530.2  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G34040.1); Has 6562 Blast hits to 5757 proteins in 228 species: Archae - 0; Bacteria - 42; Metazoa - 2345; Fungi - 482; Plants - 2102; Viruses - 25; Other Eukaryotes - 1566 (source: NCBI BLink).  protein_id AT2G15530.2p  transcript_id AT2G15530.2  protein_id AT2G15530.2p  transcript_id AT2G15530.2  
At2g15530	chr2:006774150	0.0	W/6774150-6775826,6776250-6776300,6776429-6776527,6776603-6776755,6776934-6777068	AT2G15530.3  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G34040.1); Has 6562 Blast hits to 5757 proteins in 228 species: Archae - 0; Bacteria - 42; Metazoa - 2345; Fungi - 482; Plants - 2102; Viruses - 25; Other Eukaryotes - 1566 (source: NCBI BLink).  protein_id AT2G15530.3p  transcript_id AT2G15530.3  protein_id AT2G15530.3p  transcript_id AT2G15530.3  
At2g15535	chr2:006778250	0.0	W/6778250-6778310,6778437-6778621	AT2G15535.1  CDS  gene_syn LCR10, Low-molecular-weight cysteine-rich 10  gene LCR10  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product LCR10 (Low-molecular-weight cysteine-rich 10)  note Low-molecular-weight cysteine-rich 10 (LCR10); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G15535.1p  transcript_id AT2G15535.1  protein_id AT2G15535.1p  transcript_id AT2G15535.1  
At2g15540	chr2:006778957	0.0	C/6778957-6783018	AT2G15540.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.7e-33 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)  
At2g15550	chr2:006783186	0.0	C/6783186-6785180	AT2G15550.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G16410.1); similar to 80C09_29 [Brassica rapa subsp. pekinensis] (GB:AAZ41840.1)  
At2g15555	chr2:006785904	0.0	C/6785904-6786976	AT2G15555.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G15555.1  
At2g15560	chr2:006788319	0.0	C/6788319-6789788	AT2G15560.1  CDS  go_component cellular_component|GO:0005575||ND  go_process response to oxidative stress|GO:0006979|18614705|IMP  product unknown protein  note INVOLVED IN: response to oxidative stress; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: EDA32 (embryo sac development arrest 32) (TAIR:AT3G62210.1); Has 184 Blast hits to 179 proteins in 38 species: Archae - 0; Bacteria - 4; Metazoa - 60; Fungi - 26; Plants - 90; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G15560.1p  transcript_id AT2G15560.1  protein_id AT2G15560.1p  transcript_id AT2G15560.1  
At2g15570	chr2:006792701	0.0	C/6792701-6792902,6791556-6791875	AT2G15570.1  CDS  gene_syn ATHM3, ATM3, Arabidopsis thioredoxin M-type 3  gene ATHM3  function chloroplast protein similar to prokaryotic thioredoxin.  go_component chloroplast|GO:0009507||IEA  go_process positive regulation of catalytic activity|GO:0043085|11169189|IDA  go_function enzyme activator activity|GO:0008047|11169189|IDA  product thioredoxin M-type 3, chloroplast (TRX-M3)  note ATHM3; FUNCTIONS IN: enzyme activator activity; INVOLVED IN: positive regulation of catalytic activity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4); enzyme activator (TAIR:AT3G15360.1); Has 11181 Blast hits to 11014 proteins in 1669 species: Archae - 155; Bacteria - 5343; Metazoa - 1157; Fungi - 585; Plants - 885; Viruses - 0; Other Eukaryotes - 3056 (source: NCBI BLink).  protein_id AT2G15570.1p  transcript_id AT2G15570.1  protein_id AT2G15570.1p  transcript_id AT2G15570.1  
At2g15570	chr2:006792701	0.0	C/6792701-6792902,6791556-6791878	AT2G15570.2  CDS  gene_syn ATHM3, ATM3, Arabidopsis thioredoxin M-type 3  gene ATHM3  function chloroplast protein similar to prokaryotic thioredoxin.  go_component chloroplast|GO:0009507||IEA  go_process positive regulation of catalytic activity|GO:0043085|11169189|IDA  go_function enzyme activator activity|GO:0008047|11169189|IDA  product thioredoxin M-type 3, chloroplast (TRX-M3)  note ATHM3; FUNCTIONS IN: enzyme activator activity; INVOLVED IN: positive regulation of catalytic activity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336), Thioredoxin, conserved site (InterPro:IPR017937); BEST Arabidopsis thaliana protein match is: TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4); enzyme activator (TAIR:AT3G15360.1).  protein_id AT2G15570.2p  transcript_id AT2G15570.2  protein_id AT2G15570.2p  transcript_id AT2G15570.2  
At2g15580	chr2:006797687	0.0	W/6797687-6797872,6798026-6798141,6798527-6798815	AT2G15580.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G49850.1); Has 5519 Blast hits to 5505 proteins in 191 species: Archae - 0; Bacteria - 2; Metazoa - 1926; Fungi - 328; Plants - 2351; Viruses - 2; Other Eukaryotes - 910 (source: NCBI BLink).  protein_id AT2G15580.1p  transcript_id AT2G15580.1  protein_id AT2G15580.1p  transcript_id AT2G15580.1  
At2g15590	chr2:006801950	0.0	W/6801950-6802310,6802387-6802403	AT2G15590.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G33985.1); Has 92 Blast hits to 92 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G15590.1p  transcript_id AT2G15590.1  protein_id AT2G15590.1p  transcript_id AT2G15590.1  
At2g15590	chr2:006801950	0.0	W/6801950-6802310,6802400-6802506	AT2G15590.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G33985.1); Has 94 Blast hits to 94 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G15590.2p  transcript_id AT2G15590.2  protein_id AT2G15590.2p  transcript_id AT2G15590.2  
At2g15600	chr2:006805186	0.0	C/6805186-6805458	AT2G15600.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G41505.1); similar to hypothetical protein 23.t00046 [Brassica oleracea] (GB:ABD65629.1); contains domain REVERSE TRANSCRIPTASES (PTHR19446); contains domain gb def: Hypothetical protein At2g15600 (PTHR19446:SF12)  
At2g15610	chr2:006806033	0.0	W/6806033-6806393,6806586-6806673,6807344-6807452	AT2G15610.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G15590.2); Has 104 Blast hits to 104 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G15610.1p  transcript_id AT2G15610.1  protein_id AT2G15610.1p  transcript_id AT2G15610.1  
At2g15620	chr2:006810552	0.0	W/6810552-6810927,6811124-6811478,6811560-6811848,6811926-6812666	AT2G15620.1  CDS  gene_syn ARABIDOPSIS THALIANA NITRITE REDUCTASE, ATHNIR, NIR, NIR1, NITRITE REDUCTASE, NITRITE REDUCTASE 1  gene NIR1  function involved in the second step of nitrate assimilation  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process response to salt stress|GO:0009651|11351099|IEP  go_function ferredoxin-nitrate reductase activity|GO:0047889||ISS  go_function nitrite reductase (NO-forming) activity|GO:0050421|7894060|ISS  product NIR1 (NITRITE REDUCTASE 1); ferredoxin-nitrate reductase/ nitrite reductase (NO-forming)  note NITRITE REDUCTASE 1 (NIR1); FUNCTIONS IN: ferredoxin-nitrate reductase activity, nitrite reductase (NO-forming) activity; INVOLVED IN: response to salt stress; LOCATED IN: mitochondrion, apoplast, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nitrite and sulphite reductase iron-sulphur/siroheme-binding site (InterPro:IPR006066), Nitrite and sulphite reductase 4Fe-4S region (InterPro:IPR006067), Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like (InterPro:IPR005117); BEST Arabidopsis thaliana protein match is: SIR; sulfite reductase (ferredoxin)/ sulfite reductase (TAIR:AT5G04590.1); Has 3666 Blast hits to 3610 proteins in 1011 species: Archae - 141; Bacteria - 2662; Metazoa - 2; Fungi - 102; Plants - 198; Viruses - 0; Other Eukaryotes - 561 (source: NCBI BLink).  protein_id AT2G15620.1p  transcript_id AT2G15620.1  protein_id AT2G15620.1p  transcript_id AT2G15620.1  
At2g15630	chr2:006814521	0.0	W/6814521-6816404	AT2G15630.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G01110.1); Has 24843 Blast hits to 6083 proteins in 187 species: Archae - 4; Bacteria - 18; Metazoa - 1004; Fungi - 646; Plants - 21923; Viruses - 0; Other Eukaryotes - 1248 (source: NCBI BLink).  protein_id AT2G15630.1p  transcript_id AT2G15630.1  protein_id AT2G15630.1p  transcript_id AT2G15630.1  
At2g15640	chr2:006816792	0.0	C/6816792-6818072	AT2G15640.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G16450.1); Has 861 Blast hits to 817 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 861; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G15640.1p  transcript_id AT2G15640.1  protein_id AT2G15640.1p  transcript_id AT2G15640.1  
At2g15650	chr2:006819379	0.0	W/6819379-6823451	AT2G15650.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 5.0e-227 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At2g15660	chr2:006824786	0.0	C/6824786-6825538	AT2G15660.1  CDS  gene_syn AGAMOUS-LIKE 95, AGL95  gene AGL95  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|12837945|ISS  product AGL95 (AGAMOUS-LIKE 95); transcription factor  note AGAMOUS-LIKE 95 (AGL95); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL48 (AGAMOUS-LIKE 48); transcription factor (TAIR:AT2G40210.1); Has 260 Blast hits to 258 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 260; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G15660.1p  transcript_id AT2G15660.1  protein_id AT2G15660.1p  transcript_id AT2G15660.1  
At2g15670	chr2:006828133	0.0	W/6828133-6828456,6829364-6829621	AT2G15670.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, leaf whorl, root, leaf; EXPRESSED DURING: LP.10 ten leaves visible, 4 leaf senescence stage, LP.02 two leaves visible; BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT3G51670.1); Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G15670.1p  transcript_id AT2G15670.1  protein_id AT2G15670.1p  transcript_id AT2G15670.1  
At2g15680	chr2:006831024	0.0	W/6831024-6831587	AT2G15680.1  CDS  go_function calcium ion binding|GO:0005509||IEA  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calmodulin-related protein, putative  note calmodulin-related protein, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), Recoverin (InterPro:IPR001125), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: TCH2 (TOUCH 2); calcium ion binding (TAIR:AT5G37770.1); Has 17494 Blast hits to 12391 proteins in 1232 species: Archae - 0; Bacteria - 139; Metazoa - 7182; Fungi - 3934; Plants - 3667; Viruses - 0; Other Eukaryotes - 2572 (source: NCBI BLink).  protein_id AT2G15680.1p  transcript_id AT2G15680.1  protein_id AT2G15680.1p  transcript_id AT2G15680.1  
At2g15690	chr2:006831855	0.0	C/6831855-6833594	AT2G15690.1  CDS  gene_syn F9O13.34  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G32450.1); Has 17113 Blast hits to 8427 proteins in 455 species: Archae - 2; Bacteria - 520; Metazoa - 2794; Fungi - 1180; Plants - 10468; Viruses - 37; Other Eukaryotes - 2112 (source: NCBI BLink).  protein_id AT2G15690.1p  transcript_id AT2G15690.1  protein_id AT2G15690.1p  transcript_id AT2G15690.1  
At2g15695	chr2:006836131	0.0	C/6836131-6836336,6835794-6835851,6835588-6835668,6835449-6835484,6835099-6835338,6834878-6835019,6834194-6834693	AT2G15695.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF829, eukaryotic (InterPro:IPR008547); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44250.1); Has 84 Blast hits to 84 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 30; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G15695.1p  transcript_id AT2G15695.1  protein_id AT2G15695.1p  transcript_id AT2G15695.1  
At2g15700	chr2:006837823	0.0	W/6837823-6841844	AT2G15700.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.4e-308 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At2g15710	chr2:006842648	0.0	W/6842648-6842776,6842817-6842940,6843876-6844005,6844081-6844253,6844347-6844629,6844701-6844840,6844985-6845103	AT2G15710.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT3G22080.1); Has 296 Blast hits to 239 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 274; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT2G15710.1p  transcript_id AT2G15710.1  protein_id AT2G15710.1p  transcript_id AT2G15710.1  
At2g15720	chr2:006845385	0.0	C/6845385-6848332	AT2G15720.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 5.4e-35 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At2g15730	chr2:006849797	0.0	W/6849797-6849826,6850152-6850387,6850473-6850731,6851187-6851366,6851469-6851624,6851708-6851881	AT2G15730.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34420.1); Has 83 Blast hits to 81 proteins in 19 species: Archae - 0; Bacteria - 27; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G15730.1p  transcript_id AT2G15730.1  protein_id AT2G15730.1p  transcript_id AT2G15730.1  
At2g15740	chr2:006856746	0.0	C/6856746-6857735	AT2G15740.1  CDS  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: leaf; EXPRESSED DURING: LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT2G18490.1); Has 32 Blast hits to 32 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT2G15740.1p  transcript_id AT2G15740.1  protein_id AT2G15740.1p  transcript_id AT2G15740.1  
At2g15750	chr2:006862922	0.0	W/6862922-6864116	AT2G15750.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G06845.1); similar to 80C09_17 [Brassica rapa subsp. pekinensis] (GB:AAZ41828.1); contains InterPro domain Ribonuclease H; (InterPro:IPR002156); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)  
At2g15760	chr2:006865807	0.0	C/6865807-6866754	AT2G15760.1  CDS  gene_syn F9O13.1  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516|11782485|TAS  product calmodulin-binding protein  note calmodulin-binding protein; FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1645 (InterPro:IPR012442); BEST Arabidopsis thaliana protein match is: AR781 (TAIR:AT2G26530.2); Has 94 Blast hits to 94 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G15760.1p  transcript_id AT2G15760.1  protein_id AT2G15760.1p  transcript_id AT2G15760.1  
At2g15765	chr2:006869558	0.0	C/6869558-6869895	AT2G15765.1  pseudogenic_transcript  pseudo  gene_syn F26H6.18  note pseudogene, hypothetical protein  
At2g15770	chr2:006871717	0.0	C/6871717-6872245,6871257-6871633	AT2G15770.1  CDS  gene_syn F19G14.23, F19G14_23  go_component endomembrane system|GO:0012505||IEA  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT2G15780.1); Has 18826 Blast hits to 5329 proteins in 560 species: Archae - 58; Bacteria - 4110; Metazoa - 5938; Fungi - 1792; Plants - 1480; Viruses - 72; Other Eukaryotes - 5376 (source: NCBI BLink).  protein_id AT2G15770.1p  transcript_id AT2G15770.1  protein_id AT2G15770.1p  transcript_id AT2G15770.1  
At2g15780	chr2:006874179	0.0	C/6874179-6874701,6873666-6873916	AT2G15780.1  CDS  gene_syn F19G14.22, F19G14_22  go_component endomembrane system|GO:0012505||IEA  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT2G15770.1); Has 38418 Blast hits to 11210 proteins in 855 species: Archae - 25; Bacteria - 12215; Metazoa - 13858; Fungi - 2176; Plants - 3972; Viruses - 340; Other Eukaryotes - 5832 (source: NCBI BLink).  protein_id AT2G15780.1p  transcript_id AT2G15780.1  protein_id AT2G15780.1p  transcript_id AT2G15780.1  
At2g15790	chr2:006880573	0.0	C/6880573-6880743,6879684-6880184,6879497-6879584,6879334-6879386,6878669-6878773,6878472-6878547,6878292-6878329,6878144-6878197	AT2G15790.1  CDS  gene_syn CYCLOPHILIN 40, CYCLOPHILIN-40, CYP40, F19G14.21, F19G14_21, SQN, SQUINT  gene SQN  function SQN encodes the Arabidopsis homolog of cyclophilin 40 (CyP40). It is specifically required for the vegetative but not the reproductive maturation of the shoot.  go_component cytoplasm|GO:0005737|18441215|IDA  go_process vegetative phase change|GO:0010050|11264535|IMP  go_process floral meristem determinacy|GO:0010582|18441215|IGI  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755|11264535|ISS  product SQN (SQUINT); peptidyl-prolyl cis-trans isomerase  note SQUINT (SQN); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: vegetative phase change, floral meristem determinacy; LOCATED IN: cytoplasm; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein (TAIR:AT3G63400.2); Has 14375 Blast hits to 14162 proteins in 1541 species: Archae - 82; Bacteria - 3718; Metazoa - 3963; Fungi - 1203; Plants - 1110; Viruses - 4; Other Eukaryotes - 4295 (source: NCBI BLink).  protein_id AT2G15790.1p  transcript_id AT2G15790.1  protein_id AT2G15790.1p  transcript_id AT2G15790.1  
At2g15800	chr2:006880825	0.0	W/6880825-6882741	AT2G15800.1  mRNA_TE_gene  pseudo  gene_syn F19G14.20, F19G14_20  note Transposable element gene  
At2g15810	chr2:006882821	0.0	W/6882821-6886775	AT2G15810.1  mRNA_TE_gene  pseudo  gene_syn F19G14.19, F19G14_19  note Transposable element gene, Mutator-like transposase family, has a 1.5e-12 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At2g15815	chr2:006887048	0.0	C/6887048-6887542	AT2G15815.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G26350.1)  
At2g15820	chr2:006890692	0.0	C/6890692-6891360,6888734-6890614	AT2G15820.1  CDS  gene_syn F19G14.18, F19G14_18, ORGANELLE TRANSCRIPT PROCESSING 51, OTP51  gene OTP51  function Encodes a protein that promotes splicing of type II introns. otp51 mutants fail to splice intron 2 of plastid ycf3 transcripts, a factor required for the assembly of Photosystem I. Therefore, homozygous otp51 mutants have profound photosynthetic defects and can only survive in sucrose-supplemented in vitro cultures under low light conditions. OTP51 may also be involved in splicing several other transcripts and precursor forms of the trnL, trnG, trnI, and trnA transcripts also accumulate in otp51 mutants. Although OTP51 shares some homology with DNA endonucleases, it lacks key catalytic residues suggesting that it does not participate in DNA cleavage.  go_component chloroplast|GO:0009507|18557832|RCA  go_process Group II intron splicing|GO:0000373|18557832|IMP  go_process photosystem I assembly|GO:0048564|18557832|IMP  go_function RNA splicing factor activity, transesterification mechanism|GO:0031202|18557832|IMP  product OTP51 (ORGANELLE TRANSCRIPT PROCESSING 51); RNA splicing factor, transesterification mechanism  note ORGANELLE TRANSCRIPT PROCESSING 51 (OTP51); FUNCTIONS IN: RNA splicing factor activity, transesterification mechanism; INVOLVED IN: photosystem I assembly, Group II intron splicing; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), LAGLIDADG DNA endonuclease (InterPro:IPR004860); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G61990.1); Has 3426 Blast hits to 1912 proteins in 86 species: Archae - 0; Bacteria - 2; Metazoa - 28; Fungi - 43; Plants - 3295; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT2G15820.1p  transcript_id AT2G15820.1  protein_id AT2G15820.1p  transcript_id AT2G15820.1  
At2g15830	chr2:006894175	0.0	W/6894175-6894375	AT2G15830.1  CDS  gene_syn F19G14.17, F19G14_17  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G33960.1); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G15830.1p  transcript_id AT2G15830.1  protein_id AT2G15830.1p  transcript_id AT2G15830.1  
At2g15840	chr2:006897746	0.0	C/6897746-6900002	AT2G15840.1  pseudogenic_transcript  pseudo  gene_syn F19G14.16  note pseudogene, hypothetical protein  
At2g15850	chr2:006902859	0.0	C/6902859-6903669	AT2G15850.1  pseudogenic_transcript  pseudo  gene_syn F19G14.15  note pseudogene, hypothetical protein  
At2g15860	chr2:006909079	0.0	C/6909079-6909282,6908721-6908925,6908600-6908631,6908416-6908513,6907837-6907906,6907575-6907763,6907226-6907482,6906793-6906883,6906453-6906663,6905712-6905929	AT2G15860.2  CDS  gene_syn F19G14.14, F19G14_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages.  protein_id AT2G15860.2p  transcript_id AT2G15860.2  protein_id AT2G15860.2p  transcript_id AT2G15860.2  
At2g15860	chr2:006909079	0.0	C/6909079-6909282,6908725-6908925,6908416-6908513,6907837-6907906,6907575-6907763,6907226-6907482,6906793-6906883,6906453-6906663,6905712-6905929	AT2G15860.1  CDS  gene_syn F19G14.14, F19G14_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 292 Blast hits to 278 proteins in 82 species: Archae - 0; Bacteria - 16; Metazoa - 99; Fungi - 44; Plants - 23; Viruses - 13; Other Eukaryotes - 97 (source: NCBI BLink).  protein_id AT2G15860.1p  transcript_id AT2G15860.1  protein_id AT2G15860.1p  transcript_id AT2G15860.1  
At2g15870	chr2:006909933	0.0	C/6909933-6914312	AT2G15870.1  mRNA_TE_gene  pseudo  gene_syn F19G14.13, F19G14_13  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At2g15880	chr2:006920268	0.0	C/6920268-6920319,6918039-6920170	AT2G15880.1  CDS  gene_syn F19G14.12, F19G14_12  go_component endomembrane system|GO:0012505||IEA  go_function structural constituent of cell wall|GO:0005199|12644681|ISS  go_function protein binding|GO:0005515|12644681|ISS  product leucine-rich repeat family protein / extensin family protein  note leucine-rich repeat family protein / extensin family protein; FUNCTIONS IN: structural constituent of cell wall, protein binding; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pistil-specific extensin-like protein (InterPro:IPR003882), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: protein binding / structural constituent of cell wall (TAIR:AT4G33970.1); Has 355826 Blast hits to 80683 proteins in 2260 species: Archae - 803; Bacteria - 63713; Metazoa - 130059; Fungi - 40103; Plants - 67628; Viruses - 9002; Other Eukaryotes - 44518 (source: NCBI BLink).  protein_id AT2G15880.1p  transcript_id AT2G15880.1  protein_id AT2G15880.1p  transcript_id AT2G15880.1  
At2g15890	chr2:006921762	0.0	C/6921762-6921978,6921601-6921674,6921196-6921516	AT2G15890.1  CDS  gene_syn MEE14, maternal effect embryo arrest 14  gene MEE14  go_component chloroplast|GO:0009507|18431481|IDA  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function molecular_function|GO:0003674||ND  product MEE14 (maternal effect embryo arrest 14)  note maternal effect embryo arrest 14 (MEE14); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G15890.1p  transcript_id AT2G15890.1  protein_id AT2G15890.1p  transcript_id AT2G15890.1  
At2g15890	chr2:006921762	0.0	C/6921762-6921978,6921601-6921674,6921471-6921516,6921196-6921386	AT2G15890.2  CDS  gene_syn MEE14, maternal effect embryo arrest 14  gene MEE14  go_component chloroplast|GO:0009507|18431481|IDA  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function molecular_function|GO:0003674||ND  product MEE14 (maternal effect embryo arrest 14)  note maternal effect embryo arrest 14 (MEE14); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 28 Blast hits to 28 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G15890.2p  transcript_id AT2G15890.2  protein_id AT2G15890.2p  transcript_id AT2G15890.2  
At2g15900	chr2:006927390	0.0	W/6927390-6927489,6927758-6928125,6928185-6928442,6928543-6928682,6928850-6929576,6929739-6929839,6929994-6930138,6930221-6930289,6930382-6930427,6930639-6931099,6931332-6931411,6931518-6931653,6931915-6932107,6932187-6932269,6932413-6932535	AT2G15900.1  CDS  gene_syn F19G14.10, F19G14_10  go_component cellular_component|GO:0005575||ND  go_process signal transduction|GO:0007165|15358268|ISS  go_process intracellular signaling cascade|GO:0007242||ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product phox (PX) domain-containing protein  note phox (PX) domain-containing protein; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction, intracellular signaling cascade; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PX-associated, sorting nexin 13 (InterPro:IPR013996), Sorting nexin, C-terminal (InterPro:IPR013937), Phox-like (InterPro:IPR001683), Phox-associated domain (InterPro:IPR003114); BEST Arabidopsis thaliana protein match is: phox (PX) domain-containing protein (TAIR:AT1G15240.2); Has 817 Blast hits to 672 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 575; Fungi - 121; Plants - 67; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT2G15900.1p  transcript_id AT2G15900.1  protein_id AT2G15900.1p  transcript_id AT2G15900.1  
At2g15910	chr2:006935097	0.0	C/6935097-6935333,6934531-6934616,6933518-6933854,6933276-6933410,6932917-6933225	AT2G15910.1  CDS  gene_syn F19G14.9, F19G14_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product CSL zinc finger domain-containing protein  note CSL zinc finger domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, DPH-type (InterPro:IPR007872); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44150.1); Has 316 Blast hits to 314 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 93; Plants - 69; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT2G15910.1p  transcript_id AT2G15910.1  protein_id AT2G15910.1p  transcript_id AT2G15910.1  
At2g15920	chr2:006935939	0.0	W/6935939-6940405	AT2G15920.1  mRNA_TE_gene  pseudo  gene_syn F19G14.8, F19G14_8  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At2g15930	chr2:006941976	0.0	C/6941976-6941978,6941590-6941763	AT2G15930.1  CDS  gene_syn F19G14.7, F19G14_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G15930.1p  transcript_id AT2G15930.1  protein_id AT2G15930.1p  transcript_id AT2G15930.1  
At2g15940	chr2:006942914	0.0	W/6942914-6944794	AT2G15940.1  mRNA_TE_gene  pseudo  gene_syn F19G14.6, F19G14_6  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 1.1e-114 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At2g15950	chr2:006946843	0.0	C/6946843-6946879	AT2G15950.1  tRNA  gene_syn 49256.TRNA-TYR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT2G15950.1  
At2g15960	chr2:006947353	0.0	W/6947353-6947586	AT2G15960.1  CDS  gene_syn F19G14.4, F19G14_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G15960.1p  transcript_id AT2G15960.1  protein_id AT2G15960.1p  transcript_id AT2G15960.1  
At2g15970	chr2:006950163	0.0	W/6950163-6950332,6950418-6950525,6950609-6950679,6950768-6951012	AT2G15970.1  CDS  gene_syn ARABIDOPSIS THALIANA COLD-REGULATED413 PLASMA MEMBRANE 1, ATCOR413-PM1, COLD ACCLIMATION PROTEIN WCOR413-LIKE PROTEIN ALPHA FORM, COLD REGULATED 413 PLASMA MEMBRANE 1, COR413-PM1, F19G14.3, F19G14_3, FL3-5A3, WCOR413, WCOR413-LIKE  gene COR413-PM1  function encodes an alpha form of a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|12746512|ISS  go_process cold acclimation|GO:0009631|12746512|IEP  go_process response to abscisic acid stimulus|GO:0009737|12746512|IEP  go_process cellular response to water deprivation|GO:0042631|12746512|IEP  go_function molecular_function|GO:0003674||ND  product COR413-PM1  note COR413-PM1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cold acclimation, cellular response to water deprivation, response to abscisic acid stimulus; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cold acclimation WCOR413 (InterPro:IPR008892); BEST Arabidopsis thaliana protein match is: stress-responsive protein, putative (TAIR:AT4G37220.1); Has 93 Blast hits to 92 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G15970.1p  transcript_id AT2G15970.1  protein_id AT2G15970.1p  transcript_id AT2G15970.1  
At2g15980	chr2:006951349	0.0	C/6951349-6952845	AT2G15980.1  CDS  gene_syn F19G14.2, F19G14_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: EMB2745 (EMBRYO DEFECTIVE 2745) (TAIR:AT5G39710.1); Has 12243 Blast hits to 4457 proteins in 143 species: Archae - 1; Bacteria - 12; Metazoa - 212; Fungi - 158; Plants - 11493; Viruses - 0; Other Eukaryotes - 367 (source: NCBI BLink).  protein_id AT2G15980.1p  transcript_id AT2G15980.1  protein_id AT2G15980.1p  transcript_id AT2G15980.1  
At2g15990	chr2:006953192	0.0	W/6953192-6953594	AT2G15990.1  mRNA_TE_gene  pseudo  gene_syn F16F14.28  note Transposable element gene, pseudogene, hypothetical protein  
At2g16000	chr2:006954284	0.0	W/6954284-6958648	AT2G16000.1  mRNA_TE_gene  pseudo  gene_syn F7H1.2, F7H1_2  note Transposable element gene, copia-like retrotransposon family, has a 2.6e-248 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At2g16005	chr2:006960042	0.0	C/6960042-6960135,6959830-6959928,6959568-6959737,6959347-6959466	AT2G16005.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MD-2-related lipid recognition domain-containing protein / ML domain-containing protein  note MD-2-related lipid recognition domain-containing protein / ML domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: MD-2-related lipid-recognition (InterPro:IPR003172); BEST Arabidopsis thaliana protein match is: MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (TAIR:AT3G44100.1); Has 92 Blast hits to 92 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 73; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G16005.1p  transcript_id AT2G16005.1  protein_id AT2G16005.1p  transcript_id AT2G16005.1  
At2g16010	chr2:006965610	0.0	W/6965610-6965999	AT2G16010.1  mRNA_TE_gene  pseudo  gene_syn F7H1.3, F7H1_3  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G07630.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At2g16015	chr2:006970352	0.0	W/6970352-6970510,6970675-6970851	AT2G16015.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G16015.1p  transcript_id AT2G16015.1  protein_id AT2G16015.1p  transcript_id AT2G16015.1  
At2g16016	chr2:006971140	0.0	C/6971140-6971268	AT2G16016.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G16016.1p  transcript_id AT2G16016.1  protein_id AT2G16016.1p  transcript_id AT2G16016.1  
At2g16018	chr2:006973117	0.0	C/6973117-6973518,6972579-6972620	AT2G16018.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT2G16018.1p  transcript_id AT2G16018.1  protein_id AT2G16018.1p  transcript_id AT2G16018.1  
At2g16019	chr2:006973172	0.0	W/6973172-6973282	AT2G16019.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G16019.1p  transcript_id AT2G16019.1  protein_id AT2G16019.1p  transcript_id AT2G16019.1  
At2g16020	chr2:006973356	0.0	W/6973356-6973586	AT2G16020.1  CDS  gene_syn F7H1.4, F7H1_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G16020.1p  transcript_id AT2G16020.1  protein_id AT2G16020.1p  transcript_id AT2G16020.1  
At2g16030	chr2:006974196	0.0	C/6974196-6974891	AT2G16030.1  CDS  gene_syn F7H1.5, F7H1_5  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function methyltransferase activity|GO:0008168||IEA  product methyltransferase  note methyltransferase; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: methyltransferase (TAIR:AT4G26730.1); Has 114 Blast hits to 114 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT2G16030.1p  transcript_id AT2G16030.1  protein_id AT2G16030.1p  transcript_id AT2G16030.1  
At2g16040	chr2:006976017	0.0	W/6976017-6976323,6976753-6977594	AT2G16040.1  CDS  gene_syn F7H1.6, F7H1_6  go_function protein dimerization activity|GO:0046983||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product hAT dimerisation domain-containing protein / transposase-related  note hAT dimerisation domain-containing protein / transposase-related; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906); BEST Arabidopsis thaliana protein match is: hAT dimerisation domain-containing protein / transposase-related (TAIR:AT2G06500.1); Has 268 Blast hits to 225 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 192; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G16040.1p  transcript_id AT2G16040.1  protein_id AT2G16040.1p  transcript_id AT2G16040.1  
At2g16050	chr2:006980450	0.0	W/6980450-6980898,6981657-6981939	AT2G16050.1  CDS  gene_syn F7H1.7, F7H1_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT1G20990.1); Has 719 Blast hits to 448 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 717; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G16050.1p  transcript_id AT2G16050.1  protein_id AT2G16050.1p  transcript_id AT2G16050.1  
At2g16060	chr2:006983410	0.0	C/6983410-6983522,6983213-6983327,6983017-6983133,6982782-6982919	AT2G16060.1  CDS  gene_syn AHB1, ARABIDOPSIS HEMOGLOBIN 1, ARATH GLB1, ATGLB1, CLASS I HEMOGLOBIN, F7H1.8, F7H1_8, GLB1, HEMOGLOBIN, NSHB1  gene AHB1  function Encodes a class 1 nonsymbiotic hemoglobin induced by low oxygen levels with very high oxygen affinity. It is not likely to be a hemoglobin transporter because of its extremely high affinity for oxygen.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process response to hypoxia|GO:0001666|9342391|TAS  go_function oxygen transporter activity|GO:0005344|9342391|IDA  go_function oxygen binding|GO:0019825|9342391|IDA  product AHB1 (ARABIDOPSIS HEMOGLOBIN 1); oxygen binding / oxygen transporter  note ARABIDOPSIS HEMOGLOBIN 1 (AHB1); FUNCTIONS IN: oxygen transporter activity, oxygen binding; INVOLVED IN: response to hypoxia; LOCATED IN: cell wall, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Leghaemoglobin (InterPro:IPR001032), Globin-like (InterPro:IPR009050), Globin, subset (InterPro:IPR000971), Globin, annelid-type (InterPro:IPR013316), Globin (InterPro:IPR012292); BEST Arabidopsis thaliana protein match is: AHB2 (ARABIDOPSIS HAEMOGLOBIN 2); oxygen transporter (TAIR:AT3G10520.1); Has 633 Blast hits to 596 proteins in 135 species: Archae - 0; Bacteria - 91; Metazoa - 235; Fungi - 3; Plants - 289; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT2G16060.1p  transcript_id AT2G16060.1  protein_id AT2G16060.1p  transcript_id AT2G16060.1  
At2g16070	chr2:006984072	0.0	C/6984072-6984746	AT2G16070.1  CDS  gene_syn F7H1.9, F7H1_9, PDV2, PLASTID DIVISION2  gene PDV2  function An integral outer envelope membrane protein (its homolog in A thaliana PDV1), component of the plastid division machinery. Similar to ARC6, PDV2 localizes to a continuous ring at the division site in wild-type plants. PDV1 and PDV2 are required for localization of ARC5 at the chloroplast division site.  go_component mitochondrion|GO:0005739||IEA  go_process plastid fission|GO:0043572|16998069|IGI  go_function molecular_function|GO:0003674||ND  product PDV2 (PLASTID DIVISION2)  note PLASTID DIVISION2 (PDV2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: plastid fission; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 32 Blast hits to 32 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G16070.1p  transcript_id AT2G16070.1  protein_id AT2G16070.1p  transcript_id AT2G16070.1  
At2g16070	chr2:006985075	0.0	C/6985075-6985356,6984072-6984713	AT2G16070.2  CDS  gene_syn F7H1.9, F7H1_9, PDV2, PLASTID DIVISION2  gene PDV2  function An integral outer envelope membrane protein (its homolog in A thaliana PDV1), component of the plastid division machinery. Similar to ARC6, PDV2 localizes to a continuous ring at the division site in wild-type plants. PDV1 and PDV2 are required for localization of ARC5 at the chloroplast division site.  go_process plastid fission|GO:0043572|16998069|IGI  go_function molecular_function|GO:0003674||ND  product PDV2 (PLASTID DIVISION2)  note PLASTID DIVISION2 (PDV2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: plastid fission; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 62 Blast hits to 62 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 2; Plants - 55; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G16070.2p  transcript_id AT2G16070.2  protein_id AT2G16070.2p  transcript_id AT2G16070.2  
At2g16080	chr2:006986132	0.0	C/6986132-6986640	AT2G16080.1  pseudogenic_transcript  pseudo  gene_syn F7H1.10  note pseudogene, similar to OSJNBb0041J06.18, blastp match of 33% identity and 6.9e-11 P-value to GP|27818010|dbj|BAC55773.1||AP005176 OSJNBb0041J06.18 {Oryza sativa (japonica cultivar-group)}  
At2g16090	chr2:006989697	0.0	C/6989697-6989822,6989398-6989430,6989023-6989308,6988471-6988951,6987831-6988379,6987607-6987755,6987367-6987524	AT2G16090.1  CDS  gene_syn ARI12, ARIADNE 12, ATARI12, F7H1.11, F7H1_11  gene ARI12  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger protein-related  note zinc finger protein-related; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: ARI1 (ARIADNE); protein binding / zinc ion binding (TAIR:AT4G34370.1); Has 2342 Blast hits to 2323 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 1168; Fungi - 383; Plants - 350; Viruses - 11; Other Eukaryotes - 430 (source: NCBI BLink).  protein_id AT2G16090.1p  transcript_id AT2G16090.1  protein_id AT2G16090.1p  transcript_id AT2G16090.1  
At2g16100	chr2:006990163	0.0	C/6990163-6990923	AT2G16100.1  pseudogenic_transcript  pseudo  gene_syn F7H1.12, F7H1_12  function pseudogene hypothetical protein  
At2g16110	chr2:006990979	0.0	W/6990979-6991950	AT2G16110.1  pseudogenic_transcript  pseudo  gene_syn F7H1.13, F7H1_13  note pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 34% identity and 5.9e-45 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}  
At2g16120	chr2:006998315	0.0	C/6998315-6998441,6997877-6998223,6996727-6997788	AT2G16120.1  CDS  gene_syn F7H1.14, F7H1_14  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product mannitol transporter, putative  note mannitol transporter, putative; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: mannitol transporter, putative (TAIR:AT2G16130.1); Has 23407 Blast hits to 22936 proteins in 1332 species: Archae - 349; Bacteria - 10486; Metazoa - 4745; Fungi - 4867; Plants - 1473; Viruses - 2; Other Eukaryotes - 1485 (source: NCBI BLink).  protein_id AT2G16120.1p  transcript_id AT2G16120.1  protein_id AT2G16120.1p  transcript_id AT2G16120.1  
At2g16130	chr2:007002322	0.0	W/7002322-7002448,7002543-7002889,7002982-7004043	AT2G16130.1  CDS  gene_syn F7H1.15, F7H1_15  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product mannitol transporter, putative  note mannitol transporter, putative; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: mannitol transporter, putative (TAIR:AT2G16120.1); Has 23509 Blast hits to 22906 proteins in 1339 species: Archae - 335; Bacteria - 10534; Metazoa - 4801; Fungi - 4873; Plants - 1471; Viruses - 2; Other Eukaryotes - 1493 (source: NCBI BLink).  protein_id AT2G16130.1p  transcript_id AT2G16130.1  protein_id AT2G16130.1p  transcript_id AT2G16130.1  
At2g16140	chr2:007005823	0.0	W/7005823-7008272	AT2G16140.1  mRNA_TE_gene  pseudo  gene_syn F7H1.16, F7H1_16  note Transposable element gene, similar to DNA binding [Arabidopsis thaliana] (TAIR:AT3G47680.1); similar to hypothetical protein 24.t00018 [Brassica oleracea] (GB:ABD64940.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057)  
At2g16145	chr2:007008520	0.0	W/7008520-7008599	AT2G16145.1  miRNA  gene_syn MICRORNA416, MIR416  gene MIR416  function Encodes a microRNA. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence:GGTTCGTACGTACACTGTTCA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR416 (MICRORNA416); miRNA  transcript_id AT2G16145.1  
At2g16150	chr2:007009205	0.0	W/7009205-7011913	AT2G16150.1  mRNA_TE_gene  pseudo  gene_syn F7H1.17  note Transposable element gene, Mutator-like transposase family, has a 1.4e-84 P-value blast match to Q9SL18 /349-510 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g16160	chr2:007012570	0.0	W/7012570-7013466	AT2G16160.1  mRNA_TE_gene  pseudo  gene_syn F7H1.18, F7H1_18  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G45080.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At2g16170	chr2:007013672	0.0	C/7013672-7014097	AT2G16170.1  mRNA_TE_gene  pseudo  gene_syn F7H1.19, F7H1_19  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G12110.1)  
At2g16180	chr2:007014473	0.0	C/7014473-7019440	AT2G16180.1  mRNA_TE_gene  pseudo  gene_syn F7H1.20, F7H1_20  note Transposable element gene, pseudogene, Ulp1 protease family, contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain; similar to At5g28270, At2g12100, At2g05450, At1g45090, At2g06750  
At2g16190	chr2:007020689	0.0	C/7020689-7021600	AT2G16190.1  CDS  gene_syn F7H1.21, F7H1_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G49330.1); Has 39 Blast hits to 39 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 27; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G16190.1p  transcript_id AT2G16190.1  protein_id AT2G16190.1p  transcript_id AT2G16190.1  
At2g16190	chr2:007020804	0.0	C/7020804-7021600,7020682-7020718	AT2G16190.2  CDS  gene_syn F7H1.21, F7H1_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G49330.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 0; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G16190.2p  transcript_id AT2G16190.2  protein_id AT2G16190.2p  transcript_id AT2G16190.2  
At2g16200	chr2:007024766	0.0	W/7024766-7024780,7024910-7025104	AT2G16200.1  CDS  gene_syn F7H1.22, F7H1_22  go_component Golgi-associated vesicle|GO:0005798||IEA  go_component membrane coat|GO:0030117||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function structural molecule activity|GO:0005198||IEA  go_function protein binding|GO:0005515||IEA  product protein binding / structural molecule  note protein binding / structural molecule; FUNCTIONS IN: protein binding, structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, Golgi-associated vesicle; CONTAINS InterPro DOMAIN/s: Coatomer, gamma subunit , appendage (InterPro:IPR014863), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028), Clathrin alpha-adaptin/coatomer adaptor, appendage, C-terminal subdomain (InterPro:IPR015873); BEST Arabidopsis thaliana protein match is: coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative (TAIR:AT4G34450.1); Has 39 Blast hits to 39 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G16200.1p  transcript_id AT2G16200.1  protein_id AT2G16200.1p  transcript_id AT2G16200.1  
At2g16210	chr2:007028895	0.0	C/7028895-7028993,7027651-7027945,7027309-7027568	AT2G16210.2  CDS  gene_syn F7H1.23, F7H1_23  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcriptional factor B3 family protein  note transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT5G09780.1); Has 111 Blast hits to 108 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 111; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G16210.2p  transcript_id AT2G16210.2  protein_id AT2G16210.2p  transcript_id AT2G16210.2  
At2g16210	chr2:007028895	0.0	C/7028895-7028993,7027651-7027945,7027318-7027568,7026996-7027226	AT2G16210.1  CDS  gene_syn F7H1.23, F7H1_23  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcriptional factor B3 family protein  note transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT2G35310.1); Has 149 Blast hits to 142 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G16210.1p  transcript_id AT2G16210.1  protein_id AT2G16210.1p  transcript_id AT2G16210.1  
At2g16220	chr2:007030155	0.0	C/7030155-7031378	AT2G16220.1  CDS  gene_syn F7H1.24, F7H1_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G16450.1); Has 864 Blast hits to 829 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 864; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G16220.1p  transcript_id AT2G16220.1  protein_id AT2G16220.1p  transcript_id AT2G16220.1  
At2g16225	chr2:007034254	0.0	C/7034254-7034281,7033940-7034142	AT2G16225.1  CDS  function Encodes a Maternally expressed gene (MEG) family protein  product unknown protein  note BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27135.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G16225.1p  transcript_id AT2G16225.1  protein_id AT2G16225.1p  transcript_id AT2G16225.1  
At2g16230	chr2:007037973	0.0	C/7037973-7038326,7037424-7037792,7036561-7036890,7036065-7036338,7035463-7035647	AT2G16230.1  CDS  gene_syn F16F14.27, F16F14_27  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT4G34480.1); Has 1798 Blast hits to 1745 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 52; Plants - 1742; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G16230.1p  transcript_id AT2G16230.1  protein_id AT2G16230.1p  transcript_id AT2G16230.1  
At2g16240	chr2:007039094	0.0	W/7039094-7039165	AT2G16240.1  tRNA  gene_syn 51101.TRNA-GLN-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gln (anticodon: CTG)  transcript_id AT2G16240.1  
At2g16245	chr2:007039677	0.0	W/7039677-7040592	AT2G16245.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G16250  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G16245.1  
At2g16250	chr2:007040967	0.0	C/7040967-7042933,7040550-7040675,7040399-7040421,7039682-7040313	AT2G16250.1  CDS  gene_syn F16F14.25, F16F14_25  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane, plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT4G39270.1); Has 75373 Blast hits to 40425 proteins in 1151 species: Archae - 27; Bacteria - 3407; Metazoa - 27371; Fungi - 1369; Plants - 37970; Viruses - 96; Other Eukaryotes - 5133 (source: NCBI BLink).  protein_id AT2G16250.1p  transcript_id AT2G16250.1  protein_id AT2G16250.1p  transcript_id AT2G16250.1  
At2g16260	chr2:007044815	0.0	W/7044815-7045502	AT2G16260.1  pseudogenic_transcript  pseudo  gene_syn F16F14.24, F16F14_24, GR-RBP1  gene GR-RBP1  function pseudogene of glycine-rich RNA-binding protein  
At2g16270	chr2:007048160	0.0	C/7048160-7048313,7045907-7047948,7045744-7045827	AT2G16270.1  CDS  gene_syn F16F14.23, F16F14_23  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16630.1); Has 2099 Blast hits to 1224 proteins in 202 species: Archae - 4; Bacteria - 198; Metazoa - 841; Fungi - 127; Plants - 59; Viruses - 53; Other Eukaryotes - 817 (source: NCBI BLink).  protein_id AT2G16270.1p  transcript_id AT2G16270.1  protein_id AT2G16270.1p  transcript_id AT2G16270.1  
At2g16280	chr2:007051186	0.0	W/7051186-7052724	AT2G16280.1  CDS  gene_syn 3-KETOACYL-COA SYNTHASE 9, F16F14.22, F16F14_22, KCS9  gene KCS9  function Encodes KCS9, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).  go_component membrane|GO:0016020||IEA  go_function catalytic activity|GO:0003824||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_process very-long-chain fatty acid metabolic process|GO:0000038|10330468|IDA  go_process response to osmotic stress|GO:0006970|18465198|IEP  go_process response to cold|GO:0009409|18465198|IEP  go_process response to light stimulus|GO:0009416|18465198|IEP  go_process cuticle development|GO:0042335|10330468|IDA  product KCS9 (3-KETOACYL-COA SYNTHASE 9); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups  note 3-KETOACYL-COA SYNTHASE 9 (KCS9); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: very-long-chain fatty acid metabolic process, response to light stimulus, response to cold, response to osmotic stress, cuticle development; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038), Chalcone and stilbene synthases, C-terminal (InterPro:IPR012328); BEST Arabidopsis thaliana protein match is: KCS4 (3-KETOACYL-COA SYNTHASE 4); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups (TAIR:AT1G19440.1); Has 3160 Blast hits to 3152 proteins in 751 species: Archae - 0; Bacteria - 912; Metazoa - 0; Fungi - 6; Plants - 2124; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).  protein_id AT2G16280.1p  transcript_id AT2G16280.1  protein_id AT2G16280.1p  transcript_id AT2G16280.1  
At2g16290	chr2:007060124	0.0	C/7060124-7060573,7058930-7059727	AT2G16290.1  CDS  gene_syn F16F14.21, F16F14_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G16300.1); Has 107 Blast hits to 100 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G16290.1p  transcript_id AT2G16290.1  protein_id AT2G16290.1p  transcript_id AT2G16290.1  
At2g16300	chr2:007062930	0.0	C/7062930-7063367,7061990-7062520	AT2G16300.1  CDS  gene_syn F16F14.20, F16F14_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16290.1); Has 65 Blast hits to 62 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G16300.1p  transcript_id AT2G16300.1  protein_id AT2G16300.1p  transcript_id AT2G16300.1  
At2g16310	chr2:007065216	0.0	C/7065216-7066190	AT2G16310.1  pseudogenic_transcript  pseudo  gene_syn F16F14.19  note pseudogene, RER1-related protein, blastp match of 58% identity and 2.2e-53 P-value to GP|10945247|dbj|BAB16908.1||AP002863 putative Rer1A protein (AtRer1A) {Oryza sativa (japonica cultivar-group)}  
At2g16320	chr2:007067496	0.0	W/7067496-7068347	AT2G16320.1  mRNA_TE_gene  pseudo  gene_syn F16F14.18  note Transposable element gene, pseudogene, hypothetical protein, similar to MURA transposase of maize Mutator transposon  
At2g16330	chr2:007068684	0.0	W/7068684-7069613	AT2G16330.1  mRNA_TE_gene  pseudo  gene_syn F16F14.17, F16F14_17  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G45080.1); similar to Ribosomal protein S2; Nucleic acid-binding, OB-fold [Medicago truncatula] (GB:ABE78251.1); similar to Ribosomal protein S2; Nucleic acid-binding, OB-fold [Medicago truncatula] (GB:ABE91948.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At2g16340	chr2:007073134	0.0	W/7073134-7073178,7073245-7073484	AT2G16340.1  CDS  gene_syn F16F14.16, F16F14_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 62 Blast hits to 46 proteins in 21 species: Archae - 2; Bacteria - 36; Metazoa - 12; Fungi - 4; Plants - 3; Viruses - 1; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G16340.1p  transcript_id AT2G16340.1  protein_id AT2G16340.1p  transcript_id AT2G16340.1  
At2g16365	chr2:007074940	0.0	W/7074940-7075656,7075739-7076385,7077818-7078280,7078672-7079181	AT2G16365.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G16300.1); Has 77 Blast hits to 74 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G16365.1p  transcript_id AT2G16365.1  protein_id AT2G16365.1p  transcript_id AT2G16365.1  
At2g16365	chr2:007074940	0.0	W/7074940-7075656,7075739-7076385,7077818-7078280,7078672-7079181	AT2G16365.3  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G16300.1); Has 77 Blast hits to 74 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G16365.3p  transcript_id AT2G16365.3  protein_id AT2G16365.3p  transcript_id AT2G16365.3  
At2g16365	chr2:007074940	0.0	W/7074940-7075656,7075739-7076385,7077830-7077996,7078138-7078280,7078672-7079181	AT2G16365.4  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G16300.1); Has 72 Blast hits to 70 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G16365.4p  transcript_id AT2G16365.4  protein_id AT2G16365.4p  transcript_id AT2G16365.4  
At2g16365	chr2:007074940	0.0	W/7074940-7075656,7075739-7076389	AT2G16365.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34550.1); Has 28 Blast hits to 28 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G16365.2p  transcript_id AT2G16365.2  protein_id AT2G16365.2p  transcript_id AT2G16365.2  
At2g16360	chr2:007077233	0.0	C/7077233-7077366,7076986-7077112,7076713-7076829	AT2G16360.1  CDS  gene_syn F16F14.14, F16F14_14  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S25 (RPS25A)  note 40S ribosomal protein S25 (RPS25A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S25 (InterPro:IPR004977); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S25, putative (TAIR:AT4G34555.1); Has 485 Blast hits to 485 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 227; Fungi - 93; Plants - 92; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT2G16360.1p  transcript_id AT2G16360.1  protein_id AT2G16360.1p  transcript_id AT2G16360.1  
At2g16367	chr2:007079796	0.0	C/7079796-7080248	AT2G16367.1  pseudogenic_transcript  pseudo  function Encodes a defensin-like (DEFL) family protein.  
At2g16370	chr2:007083912	0.0	C/7083912-7084333,7083436-7083817,7083314-7083358,7083109-7083174,7082961-7083022,7082799-7082873,7082545-7082710,7082240-7082470,7082038-7082148	AT2G16370.1  CDS  gene_syn DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE, F16F14.13, F16F14_13, THY-1, THYMIDYLATE SYNTHASE 1  gene THY-1  function Encodes a bifunctional dihydrofolate reductase - thymidylate synthase gene. This is unique in Arabidopsis and protozoa. Other organisms have independent genes for this function.  go_component cellular_component|GO:0005575||ND  go_process 10-formyltetrahydrofolate biosynthetic process|GO:0009257|8374616|ISS  go_function dihydrofolate reductase activity|GO:0004146|8374616|ISS  go_function thymidylate synthase activity|GO:0004799|8374616|ISS  product THY-1 (THYMIDYLATE SYNTHASE 1); dihydrofolate reductase/ thymidylate synthase  note THYMIDYLATE SYNTHASE 1 (THY-1); FUNCTIONS IN: thymidylate synthase activity, dihydrofolate reductase activity; INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Dihydrofolate reductase region (InterPro:IPR001796), Dihydrofolate reductase conserved site (InterPro:IPR017925), Bifunctional dihydrofolate reductase/thymidylate synthase (InterPro:IPR012262), Thymidylate synthase, C-terminal (InterPro:IPR000398); BEST Arabidopsis thaliana protein match is: THY-2 (thymidylate synthase 2); dihydrofolate reductase/ thymidylate synthase (TAIR:AT4G34570.1); Has 8858 Blast hits to 8838 proteins in 1501 species: Archae - 50; Bacteria - 4651; Metazoa - 396; Fungi - 310; Plants - 53; Viruses - 217; Other Eukaryotes - 3181 (source: NCBI BLink).  protein_id AT2G16370.1p  transcript_id AT2G16370.1  protein_id AT2G16370.1p  transcript_id AT2G16370.1  
At2g16380	chr2:007085972	0.0	W/7085972-7085990,7086083-7086335,7086691-7086790,7086897-7087163,7087255-7087332,7087411-7087562,7087656-7087755,7087842-7087934,7088012-7088135,7088230-7088597,7088680-7088754,7088844-7088858	AT2G16380.1  CDS  gene_syn F16F14.12, F16F14_12  go_component intracellular|GO:0005622||IEA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||IEA  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  note SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: intracellular; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: COW1 (CAN OF WORMS1); phosphatidylinositol transporter/ transporter (TAIR:AT4G34580.1); Has 1856 Blast hits to 1852 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 676; Fungi - 423; Plants - 459; Viruses - 0; Other Eukaryotes - 298 (source: NCBI BLink).  protein_id AT2G16380.1p  transcript_id AT2G16380.1  protein_id AT2G16380.1p  transcript_id AT2G16380.1  
At2g16385	chr2:007094882	0.0	W/7094882-7094966,7095238-7095284,7095438-7095557	AT2G16385.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34600.1); Has 17 Blast hits to 17 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G16385.1p  transcript_id AT2G16385.1  protein_id AT2G16385.1p  transcript_id AT2G16385.1  
At2g16390	chr2:007097638	0.0	W/7097638-7098222,7098333-7098503,7098922-7099077,7099342-7101096	AT2G16390.1  CDS  gene_syn CHR35, DEFECTIVE IN MERISTEM SILENCING 1, DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DMS1, DRD1, F16F14.11, F16F14_11  gene DRD1  function Putative chromatin remodeling protein, member of a plant-specific subfamily of SWI2/SNF2-like proteins. Mutations nearly eliminate non-CpG methylation at a target promoter but do not affect rDNA or centromere methylation. Cooperates with PolIVb to facilitate RNA-directed de novo methylation and silencing of homologous DNA. Endogenous targets include intergenic regions near retrotransposon LTRs or short RNA encoding sequences that might epigenetically regulate adjacent genes. May be used to establish a basal yet reversible level of silencing in euchromatin.  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process DNA methylation|GO:0006306|15120073|IMP  go_function nucleic acid binding|GO:0003676||ISS  go_function DNA binding|GO:0003677||ISS  go_function helicase activity|GO:0004386||ISS  go_function ATP binding|GO:0005524||ISS  product DRD1 (DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1); ATP binding / DNA binding / helicase/ nucleic acid binding  note DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1 (DRD1); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: DNA methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: CHR34 (chromatin remodeling 34); ATP binding / DNA binding / helicase/ nucleic acid binding (TAIR:AT2G21450.1); Has 9057 Blast hits to 7952 proteins in 832 species: Archae - 44; Bacteria - 1766; Metazoa - 2800; Fungi - 2201; Plants - 596; Viruses - 98; Other Eukaryotes - 1552 (source: NCBI BLink).  protein_id AT2G16390.1p  transcript_id AT2G16390.1  protein_id AT2G16390.1p  transcript_id AT2G16390.1  
At2g16400	chr2:007102649	0.0	C/7102649-7103200,7102184-7102563,7102042-7102102,7101490-7101945	AT2G16400.1  CDS  gene_syn BLH7, F16F14.10, F16F14_10, bell1-like homeodomain 7  gene BLH7  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product BLH7 (bell1-like homeodomain 7); DNA binding / transcription factor  note bell1-like homeodomain 7 (BLH7); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BLH6 (BELL1-LIKE HOMEODOMAIN 6); DNA binding / transcription factor (TAIR:AT4G34610.2); Has 3875 Blast hits to 3875 proteins in 257 species: Archae - 0; Bacteria - 10; Metazoa - 1554; Fungi - 186; Plants - 2033; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).  protein_id AT2G16400.1p  transcript_id AT2G16400.1  protein_id AT2G16400.1p  transcript_id AT2G16400.1  
At2g16405	chr2:007108596	0.0	C/7108596-7108787,7108412-7108521,7108239-7108308,7108005-7108155,7107783-7107920,7107404-7107543,7107150-7107197,7106930-7107040,7106575-7106750,7106321-7106442,7106134-7106210,7105915-7106028	AT2G16405.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G49660.1); Has 12881 Blast hits to 8739 proteins in 369 species: Archae - 16; Bacteria - 2124; Metazoa - 5277; Fungi - 2609; Plants - 1066; Viruses - 0; Other Eukaryotes - 1789 (source: NCBI BLink).  protein_id AT2G16405.1p  transcript_id AT2G16405.1  protein_id AT2G16405.1p  transcript_id AT2G16405.1  
At2g16410	chr2:007113645	0.0	W/7113645-7114259	AT2G16410.1  mRNA_TE_gene  pseudo  gene_syn F16F14.9, F16F14_9  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G15550.1); similar to 80C09_29 [Brassica rapa subsp. pekinensis] (GB:AAZ41840.1)  
At2g16420	chr2:007116052	0.0	W/7116052-7119987	AT2G16420.1  mRNA_TE_gene  pseudo  gene_syn F16F14.8  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 6.8e-39 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At2g16430	chr2:007121885	0.0	C/7121885-7122020,7121550-7121779,7121301-7121439,7120989-7121209,7120790-7120911,7120502-7120700	AT2G16430.1  CDS  gene_syn ATPAP10, F16F14.7, F16F14_7, PAP10, PURPLE ACID PHOSPHATASE 10  gene PAP10  go_component cell wall|GO:0005618|16287169|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process biological_process|GO:0008150||ND  go_function acid phosphatase activity|GO:0003993|12021284|ISS  go_function acid phosphatase activity|GO:0003993|16244908|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PAP10 (PURPLE ACID PHOSPHATASE 10); acid phosphatase/ protein serine/threonine phosphatase  note PURPLE ACID PHOSPHATASE 10 (PAP10); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Purple acid phosphatase, N-terminal (InterPro:IPR015914), Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: PAP12 (PURPLE ACID PHOSPHATASE 12); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT2G27190.1); Has 1106 Blast hits to 1097 proteins in 243 species: Archae - 0; Bacteria - 270; Metazoa - 169; Fungi - 60; Plants - 437; Viruses - 0; Other Eukaryotes - 170 (source: NCBI BLink).  protein_id AT2G16430.1p  transcript_id AT2G16430.1  protein_id AT2G16430.1p  transcript_id AT2G16430.1  
At2g16430	chr2:007122590	0.0	C/7122590-7122772,7122092-7122292,7121885-7121996,7121550-7121779,7121301-7121439,7120989-7121209,7120790-7120911,7120502-7120700	AT2G16430.2  CDS  gene_syn ATPAP10, F16F14.7, F16F14_7, PAP10, PURPLE ACID PHOSPHATASE 10  gene PAP10  go_component cell wall|GO:0005618|16287169|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process biological_process|GO:0008150||ND  go_function acid phosphatase activity|GO:0003993|12021284|ISS  go_function acid phosphatase activity|GO:0003993|16244908|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PAP10 (PURPLE ACID PHOSPHATASE 10); acid phosphatase/ protein serine/threonine phosphatase  note PURPLE ACID PHOSPHATASE 10 (PAP10); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Purple acid phosphatase, N-terminal (InterPro:IPR015914), Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: PAP12 (PURPLE ACID PHOSPHATASE 12); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT2G27190.1); Has 1151 Blast hits to 1142 proteins in 253 species: Archae - 2; Bacteria - 293; Metazoa - 169; Fungi - 60; Plants - 442; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink).  protein_id AT2G16430.2p  transcript_id AT2G16430.2  protein_id AT2G16430.2p  transcript_id AT2G16430.2  
At2g16440	chr2:007130629	0.0	C/7130629-7130665,7129871-7130560,7129645-7129773,7129490-7129571,7129285-7129417,7129130-7129201,7128910-7129032,7128705-7128818,7128413-7128625,7128206-7128304,7127920-7128080,7127724-7127820,7127462-7127623,7127280-7127360,7127128-7127206,7126882-7127018,7126706-7126765,7126536-7126610	AT2G16440.1  CDS  gene_syn F16F14.6, F16F14_6  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process DNA replication|GO:0006260||IEA  go_process DNA replication initiation|GO:0006270||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function DNA binding|GO:0003677||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process DNA replication initiation|GO:0006270||ISS  go_function DNA binding|GO:0003677||ISS  go_function ATP binding|GO:0005524||ISS  go_function DNA-dependent ATPase activity|GO:0008094||ISS  product DNA replication licensing factor, putative  note DNA replication licensing factor, putative; FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: DNA replication initiation, DNA replication; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 4 (InterPro:IPR008047); BEST Arabidopsis thaliana protein match is: minichromosome maintenance family protein / MCM family protein (TAIR:AT5G44635.1); Has 3751 Blast hits to 3594 proteins in 440 species: Archae - 240; Bacteria - 334; Metazoa - 1218; Fungi - 641; Plants - 353; Viruses - 5; Other Eukaryotes - 960 (source: NCBI BLink).  protein_id AT2G16440.1p  transcript_id AT2G16440.1  protein_id AT2G16440.1p  transcript_id AT2G16440.1  
At2g16450	chr2:007131520	0.0	C/7131520-7132803	AT2G16450.1  CDS  gene_syn F16F14.5, F16F14_5  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G15640.1); Has 798 Blast hits to 758 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 798; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G16450.1p  transcript_id AT2G16450.1  protein_id AT2G16450.1p  transcript_id AT2G16450.1  
At2g16460	chr2:007135304	0.0	C/7135304-7135483,7135024-7135155,7134882-7134941,7134228-7134304,7134092-7134148,7133808-7133823	AT2G16460.2  CDS  gene_syn F16F14.4, F16F14_4  go_component plasma membrane|GO:0005886|17151019|IDA  go_function metal ion binding|GO:0046872|12606038|IDA  go_component mitochondrion|GO:0005739|12606038|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  product metal ion binding  note metal ion binding; FUNCTIONS IN: metal ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1640 (InterPro:IPR012439); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51090.1); Has 226 Blast hits to 226 proteins in 78 species: Archae - 0; Bacteria - 2; Metazoa - 87; Fungi - 89; Plants - 44; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G16460.2p  transcript_id AT2G16460.2  protein_id AT2G16460.2p  transcript_id AT2G16460.2  
At2g16460	chr2:007135304	0.0	C/7135304-7135483,7135024-7135155,7134882-7134941,7134228-7134304,7134092-7134148,7133914-7133980,7133704-7133823	AT2G16460.1  CDS  gene_syn F16F14.4, F16F14_4  go_component mitochondrion|GO:0005739|15276431|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_function metal ion binding|GO:0046872|12606038|IDA  go_component mitochondrion|GO:0005739|12606038|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  product metal ion binding  note metal ion binding; FUNCTIONS IN: metal ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1640 (InterPro:IPR012439); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51090.1); Has 346 Blast hits to 345 proteins in 101 species: Archae - 0; Bacteria - 3; Metazoa - 143; Fungi - 122; Plants - 49; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT2G16460.1p  transcript_id AT2G16460.1  protein_id AT2G16460.1p  transcript_id AT2G16460.1  
At2g16485	chr2:007143373	0.0	C/7143373-7145222,7143175-7143254,7141721-7141905,7140502-7141381,7140290-7140417,7140037-7140096,7139884-7139934,7139515-7139611,7139206-7139376,7137269-7139088	AT2G16485.1  CDS  gene_syn F16F14.1, F16F14_1  go_component nucleus|GO:0005634||IEA  go_process transcription initiation|GO:0006352||IEA  go_process histone modification|GO:0016570||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product DNA binding / nucleic acid binding / protein binding / zinc ion binding  note DNA binding / nucleic acid binding / protein binding / zinc ion binding; FUNCTIONS IN: protein binding, DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: histone modification, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Plus-3 domain, subgroup (InterPro:IPR018144), Zinc finger, PHD-type (InterPro:IPR001965), GYF (InterPro:IPR003169), SWIB/MDM2 (InterPro:IPR003121), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Plus-3 (InterPro:IPR004343), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: DNA binding / nucleic acid binding / protein binding / zinc ion binding (TAIR:AT3G51120.1); Has 31360 Blast hits to 19350 proteins in 1182 species: Archae - 455; Bacteria - 2891; Metazoa - 12907; Fungi - 3563; Plants - 1325; Viruses - 308; Other Eukaryotes - 9911 (source: NCBI BLink).  protein_id AT2G16485.1p  transcript_id AT2G16485.1  protein_id AT2G16485.1p  transcript_id AT2G16485.1  
At2g16490	chr2:007147233	0.0	C/7147233-7147296,7146563-7146717,7146068-7146342,7146000-7146045	AT2G16490.1  CDS  gene_syn F1P15.13, F1P15_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product XH domain-containing protein  note XH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Region of unknown function XH (InterPro:IPR005379); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein / XS zinc finger domain-containing protein (TAIR:AT1G15910.1); Has 108 Blast hits to 102 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G16490.1p  transcript_id AT2G16490.1  protein_id AT2G16490.1p  transcript_id AT2G16490.1  
At2g16500	chr2:007150796	0.0	C/7150796-7152904	AT2G16500.1  CDS  gene_syn ADC1, ARGDC, ARGDC1, ARGININE DECARBOXYLASE, ARGININE DECARBOXYLASE 1, F1P15.12, F1P15_12, SPE1  gene ADC1  function encodes a arginine decarboxylase (ADC), a rate-limiting enzyme that catalyzes the first step of polyamine (PA) biosynthesis via ADC pathway in Arabidopsis thaliana. Arabidopsis genome has two ADC paralogs, ADC1 and ADC2. Double mutant analysis showed that ADC genes are essential for the production of PA, and are required for normal seed development. Promoter region of ADC1 contains 742-bp AT-rich transposable element, called AtATE, that belongs to the MITE families of repetitive elements.  go_process response to oxidative stress|GO:0006979|15634198|IEP  go_process response to cold|GO:0009409|18701673|IMP  go_process response to salt stress|GO:0009651|15086823|IMP  go_process seed development|GO:0048316|15733873|IGI  go_function arginine decarboxylase activity|GO:0008792||NAS  product ADC1 (ARGININE DECARBOXYLASE 1); arginine decarboxylase  note ARGININE DECARBOXYLASE 1 (ADC1); FUNCTIONS IN: arginine decarboxylase activity; INVOLVED IN: response to oxidative stress, response to salt stress, response to cold, seed development; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Orn/DAP/Arg decarboxylase 2 (InterPro:IPR000183), Arginine decarboxylase (InterPro:IPR002985); BEST Arabidopsis thaliana protein match is: ADC2 (ARGININE DECARBOXYLASE 2); arginine decarboxylase (TAIR:AT4G34710.2); Has 4848 Blast hits to 4801 proteins in 1161 species: Archae - 72; Bacteria - 2828; Metazoa - 74; Fungi - 21; Plants - 294; Viruses - 2; Other Eukaryotes - 1557 (source: NCBI BLink).  protein_id AT2G16500.1p  transcript_id AT2G16500.1  protein_id AT2G16500.1p  transcript_id AT2G16500.1  
At2g16505	chr2:007157647	0.0	C/7157647-7157710,7157365-7157534	AT2G16505.1  CDS  function Encodes a Maternally expressed gene (MEG) family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16535.1); Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G16505.1p  transcript_id AT2G16505.1  protein_id AT2G16505.1p  transcript_id AT2G16505.1  
At2g16510	chr2:007160736	0.0	C/7160736-7160811,7160225-7160510,7160007-7160139	AT2G16510.1  CDS  gene_syn F1P15.11, F1P15_11  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_function ATPase activity|GO:0016887||ISS  product vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5)  note vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5); FUNCTIONS IN: ATPase activity; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F0/V0 complex, subunit C (InterPro:IPR002379), ATPase, V0 complex, proteolipid subunit C, eukaryotic (InterPro:IPR011555), ATPase, V0 complex, proteolipid subunit C (InterPro:IPR000245); BEST Arabidopsis thaliana protein match is: ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3); ATPase (TAIR:AT4G38920.1); Has 1813 Blast hits to 1633 proteins in 398 species: Archae - 127; Bacteria - 309; Metazoa - 519; Fungi - 314; Plants - 224; Viruses - 0; Other Eukaryotes - 320 (source: NCBI BLink).  protein_id AT2G16510.1p  transcript_id AT2G16510.1  protein_id AT2G16510.1p  transcript_id AT2G16510.1  
At2g16520	chr2:007162295	0.0	C/7162295-7162384,7161922-7162131	AT2G16520.1  CDS  gene_syn F1P15.10, F1P15_10  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G45570.1); Has 44 Blast hits to 41 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G16520.1p  transcript_id AT2G16520.1  protein_id AT2G16520.1p  transcript_id AT2G16520.1  
At2g16530	chr2:007164894	0.0	C/7164894-7165064,7164133-7164479,7163821-7164055,7163650-7163748,7163494-7163565,7163276-7163380	AT2G16530.2  CDS  gene_syn F1P15.9, F1P15_9  go_process lipid metabolic process|GO:0006629||IEA  go_function oxidoreductase activity, acting on the CH-CH group of donors|GO:0016627||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_function 3-oxo-5-alpha-steroid 4-dehydrogenase activity|GO:0003865||ISS  product 3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein  note 3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein; FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors, 3-oxo-5-alpha-steroid 4-dehydrogenase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal (InterPro:IPR001104); BEST Arabidopsis thaliana protein match is: 3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein (TAIR:AT1G72590.1); Has 802 Blast hits to 802 proteins in 149 species: Archae - 0; Bacteria - 20; Metazoa - 320; Fungi - 111; Plants - 85; Viruses - 0; Other Eukaryotes - 266 (source: NCBI BLink).  protein_id AT2G16530.2p  transcript_id AT2G16530.2  protein_id AT2G16530.2p  transcript_id AT2G16530.2  
At2g16530	chr2:007164894	0.0	C/7164894-7165064,7164133-7164482,7163821-7164055,7163650-7163748,7163494-7163565,7163276-7163380	AT2G16530.1  CDS  gene_syn F1P15.9, F1P15_9  go_process lipid metabolic process|GO:0006629||IEA  go_function oxidoreductase activity, acting on the CH-CH group of donors|GO:0016627||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_function 3-oxo-5-alpha-steroid 4-dehydrogenase activity|GO:0003865||ISS  product 3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein  note 3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein; FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors, 3-oxo-5-alpha-steroid 4-dehydrogenase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal (InterPro:IPR001104); BEST Arabidopsis thaliana protein match is: 3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein (TAIR:AT1G72590.1); Has 802 Blast hits to 802 proteins in 149 species: Archae - 0; Bacteria - 20; Metazoa - 320; Fungi - 111; Plants - 85; Viruses - 0; Other Eukaryotes - 266 (source: NCBI BLink).  protein_id AT2G16530.1p  transcript_id AT2G16530.1  protein_id AT2G16530.1p  transcript_id AT2G16530.1  
At2g16535	chr2:007166377	0.0	C/7166377-7166440,7166107-7166273	AT2G16535.1  CDS  function Encodes a Maternally expressed gene (MEG) family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16505.1); Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G16535.1p  transcript_id AT2G16535.1  protein_id AT2G16535.1p  transcript_id AT2G16535.1  
At2g16540	chr2:007170932	0.0	C/7170932-7171404	AT2G16540.1  mRNA_TE_gene  pseudo  gene_syn F1P15.8  note Transposable element gene, pseudogene, similar to oj991113_30.20, blastp match of 37% identity and 2.3e-07 P-value to GP|21741715|emb|CAD41338.1||AL662946 oj991113_30.20 {Oryza sativa (japonica cultivar-group)}  
At2g16550	chr2:007172253	0.0	W/7172253-7172561	AT2G16550.1  pseudogenic_transcript  pseudo  gene_syn F1P15.7  note amidophosphoribosyltransferase fragment, pseudogene, blastp match of 81% identity and 1.1e-11 P-value to GP|3243256|gb|AAC24007.1||AF071862 phosphoribosylpyrophosphate amidotransferase {Vigna unguiculata}  
At2g16560	chr2:007173003	0.0	W/7173003-7176689	AT2G16560.1  mRNA_TE_gene  pseudo  gene_syn F1P15.6  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.7e-41 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At2g16570	chr2:007180424	0.0	C/7180424-7182124	AT2G16570.1  CDS  gene_syn ATASE, ATASE1, GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 1  gene ATASE1  function Amidophosphoribosyltransferase (ATase: EC 2.4.2.14) is a key enzyme in the pathway of purine nucleotide biosynthesis  go_component cell wall|GO:0005618|16287169|IDA  go_process metabolic process|GO:0008152||ISS  go_process purine base biosynthetic process|GO:0009113|7948903|ISS  go_function amidophosphoribosyltransferase activity|GO:0004044|7948903|ISS  go_function amidophosphoribosyltransferase activity|GO:0004044||ISS  product ATASE1 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 1); amidophosphoribosyltransferase  note GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 1 (ATASE1); FUNCTIONS IN: amidophosphoribosyltransferase activity; INVOLVED IN: purine base biosynthetic process, metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase, class-II (InterPro:IPR000583), Phosphoribosyltransferase (InterPro:IPR000836), Amidophosphoribosyl transferase (InterPro:IPR005854), Glutamine amidotransferase, type II (InterPro:IPR017932); BEST Arabidopsis thaliana protein match is: ATASE2 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 2); amidophosphoribosyltransferase (TAIR:AT4G34740.1); Has 15017 Blast hits to 15013 proteins in 1639 species: Archae - 370; Bacteria - 6456; Metazoa - 369; Fungi - 250; Plants - 167; Viruses - 15; Other Eukaryotes - 7390 (source: NCBI BLink).  protein_id AT2G16570.1p  transcript_id AT2G16570.1  protein_id AT2G16570.1p  transcript_id AT2G16570.1  
At2g16575	chr2:007184652	0.0	W/7184652-7184751,7184833-7185245	AT2G16575.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17780.2); Has 12 Blast hits to 12 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G16575.1p  transcript_id AT2G16575.1  protein_id AT2G16575.1p  transcript_id AT2G16575.1  
At2g16580	chr2:007186602	0.0	C/7186602-7186928	AT2G16580.1  CDS  gene_syn F1P15.4, F1P15_4  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive protein, putative  note auxin-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT4G34760.1); Has 652 Blast hits to 640 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 651; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G16580.1p  transcript_id AT2G16580.1  protein_id AT2G16580.1p  transcript_id AT2G16580.1  
At2g16586	chr2:007191649	0.0	W/7191649-7191810	AT2G16586.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G16586.1p  transcript_id AT2G16586.1  protein_id AT2G16586.1p  transcript_id AT2G16586.1  
At2g16592	chr2:007196271	0.0	W/7196271-7196576	AT2G16592.1  CDS  function Encodes a Protease inhibitor/seed storage/LTP family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16594.1); Has 25 Blast hits to 25 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G16592.1p  transcript_id AT2G16592.1  protein_id AT2G16592.1p  transcript_id AT2G16592.1  
At2g16594	chr2:007197774	0.0	W/7197774-7198082	AT2G16594.1  CDS  function Encodes a Protease inhibitor/seed storage/LTP family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16592.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G16594.1p  transcript_id AT2G16594.1  protein_id AT2G16594.1p  transcript_id AT2G16594.1  
At2g16595	chr2:007198363	0.0	W/7198363-7198426,7198533-7198685,7198765-7198815,7198901-7198986,7199405-7199482,7199571-7199774,7199859-7199930,7200039-7200086	AT2G16595.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: translocon-associated protein alpha (TRAP alpha) family protein (TAIR:AT2G21160.1); Has 191 Blast hits to 191 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 18; Plants - 38; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT2G16595.1p  transcript_id AT2G16595.1  protein_id AT2G16595.1p  transcript_id AT2G16595.1  
At2g16600	chr2:007200862	0.0	W/7200862-7201012,7201079-7201383	AT2G16600.2  CDS  gene_syn CYCLOPHILIN, ROC3, ROTAMASE CYP 3, T24I21.1, T24I21_1  gene ROC3  function Encodes cytosolic cyclophilin ROC3.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component cytosol|GO:0005829|9426607|ISS  go_process protein folding|GO:0006457||ISS  go_process signal transduction|GO:0007165|9426607|ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755|9426607|ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product ROC3; peptidyl-prolyl cis-trans isomerase  note ROC3; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, signal transduction; LOCATED IN: cytosol, chloroplast, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP2) / rotamase (TAIR:AT2G21130.1); Has 8539 Blast hits to 8536 proteins in 1052 species: Archae - 62; Bacteria - 1775; Metazoa - 2392; Fungi - 915; Plants - 701; Viruses - 4; Other Eukaryotes - 2690 (source: NCBI BLink).  protein_id AT2G16600.2p  transcript_id AT2G16600.2  protein_id AT2G16600.2p  transcript_id AT2G16600.2  
At2g16600	chr2:007200862	0.0	W/7200862-7201383	AT2G16600.1  CDS  gene_syn CYCLOPHILIN, ROC3, ROTAMASE CYP 3, T24I21.1, T24I21_1  gene ROC3  function Encodes cytosolic cyclophilin ROC3.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component cytosol|GO:0005829|9426607|ISS  go_process protein folding|GO:0006457||ISS  go_process signal transduction|GO:0007165|9426607|ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755|9426607|ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product ROC3; peptidyl-prolyl cis-trans isomerase  note ROC3; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, signal transduction; LOCATED IN: cytosol, chloroplast, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP2) / rotamase (TAIR:AT2G21130.1); Has 11397 Blast hits to 11376 proteins in 1515 species: Archae - 82; Bacteria - 3600; Metazoa - 2407; Fungi - 955; Plants - 725; Viruses - 4; Other Eukaryotes - 3624 (source: NCBI BLink).  protein_id AT2G16600.1p  transcript_id AT2G16600.1  protein_id AT2G16600.1p  transcript_id AT2G16600.1  
At2g16610	chr2:007202413	0.0	C/7202413-7203876	AT2G16610.1  mRNA_TE_gene  pseudo  gene_syn T24I21.2, T24I21_2  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 6.1e-89 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota)  
At2g16620	chr2:007205834	0.0	C/7205834-7205918,7205391-7205707	AT2G16620.1  CDS  gene_syn T24I21.3, T24I21_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product protein kinase-related  note protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase-related (TAIR:AT3G23650.1); Has 6923 Blast hits to 6876 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 6910; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G16620.1p  transcript_id AT2G16620.1  protein_id AT2G16620.1p  transcript_id AT2G16620.1  
At2g16630	chr2:007209286	0.0	W/7209286-7209442,7209519-7210098,7210530-7210872	AT2G16630.1  CDS  gene_syn T24I21.4, T24I21_4  go_component endomembrane system|GO:0012505||IEA  product proline-rich family protein  note proline-rich family protein; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30615 Blast hits to 12866 proteins in 952 species: Archae - 129; Bacteria - 4924; Metazoa - 9908; Fungi - 2400; Plants - 7918; Viruses - 1298; Other Eukaryotes - 4038 (source: NCBI BLink).  protein_id AT2G16630.1p  transcript_id AT2G16630.1  protein_id AT2G16630.1p  transcript_id AT2G16630.1  
At2g16640	chr2:007211489	0.0	C/7211489-7215109	AT2G16640.1  CDS  gene_syn ATTOC132, MULTIMERIC TRANSLOCON COMPLEX IN THE OUTER ENVELOPE MEMBRANE 132, T24I21.5, T24I21_5, TOC132  gene TOC132  go_component membrane|GO:0016020|17432890|IDA  go_component chloroplast outer membrane|GO:0009707|10646606|IDA  go_component chloroplast outer membrane|GO:0009707||ISS  go_process protein targeting to chloroplast|GO:0045036|10646606|IGI  go_function transmembrane receptor activity|GO:0004888|10646606|ISS  product TOC132 (MULTIMERIC TRANSLOCON COMPLEX IN THE OUTER ENVELOPE MEMBRANE 132); transmembrane receptor  note MULTIMERIC TRANSLOCON COMPLEX IN THE OUTER ENVELOPE MEMBRANE 132 (TOC132); FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: protein targeting to chloroplast; LOCATED IN: chloroplast outer membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chloroplast protein import component Toc86/159 (InterPro:IPR005690), AIG1 (InterPro:IPR006703); BEST Arabidopsis thaliana protein match is: ATTOC120; GTP binding (TAIR:AT3G16620.1); Has 6352 Blast hits to 4186 proteins in 415 species: Archae - 14; Bacteria - 449; Metazoa - 2396; Fungi - 635; Plants - 342; Viruses - 83; Other Eukaryotes - 2433 (source: NCBI BLink).  protein_id AT2G16640.1p  transcript_id AT2G16640.1  protein_id AT2G16640.1p  transcript_id AT2G16640.1  
At2g16650	chr2:007217075	0.0	C/7217075-7218061,7216804-7216905,7216527-7216705,7216308-7216428,7216137-7216205,7215937-7216065	AT2G16650.1  CDS  gene_syn T24I21.6, T24I21_6  go_component chloroplast|GO:0009507||IEA  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  product antiporter/ drug transporter  note antiporter/ drug transporter; FUNCTIONS IN: drug transporter activity, antiporter activity; INVOLVED IN: multidrug transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: male gametophyte, cultured cell; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: antiporter/ drug transporter/ transporter (TAIR:AT4G21900.1); Has 230 Blast hits to 222 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 70; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT2G16650.1p  transcript_id AT2G16650.1  protein_id AT2G16650.1p  transcript_id AT2G16650.1  
At2g16660	chr2:007221260	0.0	C/7221260-7221592,7220305-7221140,7218930-7219401	AT2G16660.1  CDS  gene_syn T24I21.7, T24I21_7  go_component endomembrane system|GO:0012505||IEA  product nodulin family protein  note nodulin family protein; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nodulin family protein (TAIR:AT4G34950.1); Has 2167 Blast hits to 2106 proteins in 496 species: Archae - 9; Bacteria - 855; Metazoa - 6; Fungi - 200; Plants - 319; Viruses - 0; Other Eukaryotes - 778 (source: NCBI BLink).  protein_id AT2G16660.1p  transcript_id AT2G16660.1  protein_id AT2G16660.1p  transcript_id AT2G16660.1  
At2g16668	chr2:007223896	0.0	C/7223896-7224048	AT2G16668.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G16668.1p  transcript_id AT2G16668.1  protein_id AT2G16668.1p  transcript_id AT2G16668.1  
At2g16670	chr2:007224341	0.0	C/7224341-7228819	AT2G16670.1  mRNA_TE_gene  pseudo  gene_syn T24I21.8, T24I21_8  note Transposable element gene, copia-like retrotransposon family, has a 1.2e-190 P-value blast match to GB:AAB82754 retrofit (TY1_Copia-element) (Oryza longistaminata)  
At2g16676	chr2:007230871	0.0	C/7230871-7231527	AT2G16676.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02000.1); Has 93 Blast hits to 91 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G16676.1p  transcript_id AT2G16676.1  protein_id AT2G16676.1p  transcript_id AT2G16676.1  
At2g16680	chr2:007232292	0.0	C/7232292-7236283	AT2G16680.1  mRNA_TE_gene  pseudo  gene_syn T24I21.9, T24I21_9  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 5.0e-35 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At2g16690	chr2:007236878	0.0	C/7236878-7237600	AT2G16690.1  mRNA_TE_gene  pseudo  gene_syn T24I21.10, T24I21_10  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G41570.1); similar to 80C09_29 [Brassica rapa subsp. pekinensis] (GB:AAZ41840.1); contains domain Retrovirus zinc finger-like domains (SSF57756)  
At2g16700	chr2:007244717	0.0	W/7244717-7244737,7244815-7245074,7245317-7245467	AT2G16700.1  CDS  gene_syn ACTIN DEPOLYMERIZING FACTOR 5, ADF5, ATADF5, T24I21.11, T24I21_11  gene ADF5  function Encodes actin depolymerizing factor 5 (ADF5).  go_component intracellular|GO:0005622||IEA  go_function actin binding|GO:0003779||IEA  go_component intracellular|GO:0005622||ISS  go_process biological_process|GO:0008150||ND  product ADF5 (ACTIN DEPOLYMERIZING FACTOR 5); actin binding  note ACTIN DEPOLYMERIZING FACTOR 5 (ADF5); FUNCTIONS IN: actin binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding, cofilin/tropomyosin type (InterPro:IPR002108); BEST Arabidopsis thaliana protein match is: ADF9 (ACTIN DEPOLYMERIZING FACTOR 9); actin binding (TAIR:AT4G34970.1); Has 891 Blast hits to 890 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 371; Fungi - 99; Plants - 307; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).  protein_id AT2G16700.1p  transcript_id AT2G16700.1  protein_id AT2G16700.1p  transcript_id AT2G16700.1  
At2g16710	chr2:007248294	0.0	W/7248294-7248486,7249713-7249830,7249911-7250013	AT2G16710.1  CDS  gene_syn T24I21.12, T24I21_12  go_process iron-sulfur cluster assembly|GO:0016226||IEA  go_function structural molecule activity|GO:0005198||IEA  go_function iron-sulfur cluster binding|GO:0051536||IEA  product hesB-like domain-containing protein  note hesB-like domain-containing protein; FUNCTIONS IN: iron-sulfur cluster binding, structural molecule activity; INVOLVED IN: iron-sulfur cluster assembly; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: FeS cluster insertion, C-terminal, conserved site (InterPro:IPR017870), FeS cluster biogenesis (InterPro:IPR000361), FeS cluster insertion (InterPro:IPR016092); BEST Arabidopsis thaliana protein match is: iron-sulfur cluster assembly complex protein, putative (TAIR:AT2G36260.1); Has 7502 Blast hits to 7501 proteins in 1103 species: Archae - 23; Bacteria - 3507; Metazoa - 207; Fungi - 108; Plants - 89; Viruses - 0; Other Eukaryotes - 3568 (source: NCBI BLink).  protein_id AT2G16710.1p  transcript_id AT2G16710.1  protein_id AT2G16710.1p  transcript_id AT2G16710.1  
At2g16710	chr2:007248294	0.0	W/7248294-7248486,7249713-7249830,7249916-7249937	AT2G16710.2  CDS  gene_syn T24I21.12, T24I21_12  go_process iron-sulfur cluster assembly|GO:0016226||IEA  go_function structural molecule activity|GO:0005198||IEA  go_function iron-sulfur cluster binding|GO:0051536||IEA  product hesB-like domain-containing protein  note hesB-like domain-containing protein; FUNCTIONS IN: iron-sulfur cluster binding, structural molecule activity; INVOLVED IN: iron-sulfur cluster assembly; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: FeS cluster biogenesis (InterPro:IPR000361), FeS cluster insertion (InterPro:IPR016092); BEST Arabidopsis thaliana protein match is: iron-sulfur cluster assembly complex protein, putative (TAIR:AT2G36260.1); Has 5507 Blast hits to 5506 proteins in 1027 species: Archae - 16; Bacteria - 2907; Metazoa - 145; Fungi - 81; Plants - 78; Viruses - 0; Other Eukaryotes - 2280 (source: NCBI BLink).  protein_id AT2G16710.2p  transcript_id AT2G16710.2  protein_id AT2G16710.2p  transcript_id AT2G16710.2  
At2g16720	chr2:007256288	0.0	C/7256288-7256550,7255669-7256215	AT2G16720.1  CDS  gene_syn ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, ATMYB7, ATY49, MYB DOMAIN PROTEIN 7, MYB7, T24I21.13, T24I21_13  gene MYB7  function Encodes a member of MYB3R- and R2R3- type MYB- encoding genes  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB7 (MYB DOMAIN PROTEIN 7); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 7 (MYB7); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 8 processes; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: AtMYB32 (myb domain protein 32); DNA binding / transcription factor (TAIR:AT4G34990.1); Has 6460 Blast hits to 5952 proteins in 355 species: Archae - 0; Bacteria - 0; Metazoa - 646; Fungi - 297; Plants - 3919; Viruses - 3; Other Eukaryotes - 1595 (source: NCBI BLink).  protein_id AT2G16720.1p  transcript_id AT2G16720.1  protein_id AT2G16720.1p  transcript_id AT2G16720.1  
At2g16730	chr2:007265887	0.0	C/7265887-7266105,7265696-7265791,7265498-7265610,7265332-7265398,7265141-7265233,7264890-7265033,7264713-7264807,7264530-7264635,7264364-7264448,7264142-7264260,7263870-7264037,7263590-7263765,7263381-7263490,7263182-7263291,7262970-7263080,7262798-7262902,7262212-7262706,7261986-7262120	AT2G16730.1  CDS  gene_syn BGAL13, T24I21.14, T24I21_14, beta-galactosidase 13  gene BGAL13  function putative beta-galactosidase (BGAL13 gene)  go_component beta-galactosidase complex|GO:0009341||IEA  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process lactose catabolic process|GO:0005990||IEA  go_process lactose catabolic process, using glucoside 3-dehydrogenase|GO:0019513||IEA  go_process lactose catabolic process via UDP-galactose|GO:0019515||IEA  go_function beta-galactosidase activity|GO:0004565|15517348|TAS  go_function beta-galactosidase activity|GO:0004565||ISS  product BGAL13; beta-galactosidase  note BGAL13; FUNCTIONS IN: beta-galactosidase activity; INVOLVED IN: lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process; LOCATED IN: endomembrane system, beta-galactosidase complex; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase family 2, carbohydrate-binding (InterPro:IPR006104), Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: BGAL11 (beta-galactosidase 11); beta-galactosidase (TAIR:AT4G35010.1); Has 1418 Blast hits to 1240 proteins in 274 species: Archae - 11; Bacteria - 453; Metazoa - 367; Fungi - 124; Plants - 386; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT2G16730.1p  transcript_id AT2G16730.1  protein_id AT2G16730.1p  transcript_id AT2G16730.1  
At2g16740	chr2:007267880	0.0	W/7267880-7267949,7268051-7268178,7268364-7268468,7268594-7268737	AT2G16740.1  CDS  gene_syn T24I21.15, T24I21_15, UBC29, ubiquitin-conjugating enzyme 29  gene UBC29  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC29 (ubiquitin-conjugating enzyme 29); ubiquitin-protein ligase  note ubiquitin-conjugating enzyme 29 (UBC29); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC10 (ubiquitin-conjugating enzyme 10); ubiquitin-protein ligase (TAIR:AT5G53300.2); Has 7805 Blast hits to 7784 proteins in 311 species: Archae - 0; Bacteria - 0; Metazoa - 3745; Fungi - 1529; Plants - 1137; Viruses - 19; Other Eukaryotes - 1375 (source: NCBI BLink).  protein_id AT2G16740.1p  transcript_id AT2G16740.1  protein_id AT2G16740.1p  transcript_id AT2G16740.1  
At2g16750	chr2:007271786	0.0	W/7271786-7271939,7272032-7272105,7272188-7272306,7272388-7272500,7272602-7272979,7273055-7273306,7273392-7273543,7273633-7273860,7273941-7274090,7274213-7274446	AT2G16750.1  CDS  gene_syn T24I21.16, T24I21_16  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G35030.2); Has 78634 Blast hits to 77772 proteins in 2243 species: Archae - 39; Bacteria - 7066; Metazoa - 34040; Fungi - 5682; Plants - 18147; Viruses - 374; Other Eukaryotes - 13286 (source: NCBI BLink).  protein_id AT2G16750.1p  transcript_id AT2G16750.1  protein_id AT2G16750.1p  transcript_id AT2G16750.1  
At2g16760	chr2:007275739	0.0	W/7275739-7276171,7276503-7276862,7276932-7277122	AT2G16760.1  CDS  gene_syn T24I21.17, T24I21_17  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G47370.1); Has 78 Blast hits to 78 proteins in 24 species: Archae - 0; Bacteria - 32; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G16760.1p  transcript_id AT2G16760.1  protein_id AT2G16760.1p  transcript_id AT2G16760.1  
At2g16770	chr2:007279859	0.0	W/7279859-7280579,7280789-7280817	AT2G16770.1  CDS  gene_syn T24I21.18, T24I21_18  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  product DNA binding / transcription factor  note DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT4G35040.1); Has 70 Blast hits to 70 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 13; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G16770.1p  transcript_id AT2G16770.1  protein_id AT2G16770.1p  transcript_id AT2G16770.1  
At2g16780	chr2:007283266	0.0	C/7283266-7283583,7282717-7283040,7282483-7282626,7282206-7282330,7281957-7282052,7281615-7281855	AT2G16780.1  CDS  gene_syn MSI02, MSI2, MULTICOPY SUPPRESSOR OF IRA1 2, NFC02, NFC2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, T24I21.19, T24I21_19  gene MSI2  function Encodes a WD-40 repeat protein similar to yeast MSI1.  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MSI2 (MULTICOPY SUPPRESSOR OF IRA1 2)  note MULTICOPY SUPPRESSOR OF IRA1 2 (MSI2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: MSI3 (MULTICOPY SUPPRESSOR OF IRA1 3); protein binding (TAIR:AT4G35050.1); Has 32478 Blast hits to 19282 proteins in 560 species: Archae - 30; Bacteria - 2868; Metazoa - 15155; Fungi - 6764; Plants - 3117; Viruses - 0; Other Eukaryotes - 4544 (source: NCBI BLink).  protein_id AT2G16780.1p  transcript_id AT2G16780.1  protein_id AT2G16780.1p  transcript_id AT2G16780.1  
At2g16790	chr2:007284883	0.0	C/7284883-7284901,7284762-7284804,7284588-7284667,7284093-7284514	AT2G16790.2  CDS  gene_syn T24I21.20, T24I21_20  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function shikimate kinase activity|GO:0004765||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||IEA  go_component cellular_component|GO:0005575||ND  product shikimate kinase family protein  note shikimate kinase family protein; FUNCTIONS IN: shikimate kinase activity, kinase activity, ATP binding; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Shikimate kinase (InterPro:IPR000623), Carbohydrate kinase, thermoresistant glucokinase (InterPro:IPR006001); Has 1414 Blast hits to 1414 proteins in 552 species: Archae - 5; Bacteria - 1081; Metazoa - 42; Fungi - 102; Plants - 10; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink).  protein_id AT2G16790.2p  transcript_id AT2G16790.2  protein_id AT2G16790.2p  transcript_id AT2G16790.2  
At2g16790	chr2:007284883	0.0	C/7284883-7284901,7284762-7284810,7284588-7284667,7284093-7284514	AT2G16790.1  CDS  gene_syn T24I21.20, T24I21_20  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function shikimate kinase activity|GO:0004765||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||IEA  go_component cellular_component|GO:0005575||ND  product shikimate kinase family protein  note shikimate kinase family protein; FUNCTIONS IN: shikimate kinase activity, kinase activity, ATP binding; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Shikimate kinase (InterPro:IPR000623), Carbohydrate kinase, thermoresistant glucokinase (InterPro:IPR006001); Has 1404 Blast hits to 1404 proteins in 546 species: Archae - 5; Bacteria - 1070; Metazoa - 44; Fungi - 102; Plants - 10; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).  protein_id AT2G16790.1p  transcript_id AT2G16790.1  protein_id AT2G16790.1p  transcript_id AT2G16790.1  
At2g16800	chr2:007285824	0.0	W/7285824-7286129,7286376-7287188	AT2G16800.1  CDS  gene_syn T24I21.21, T24I21_21  go_component chloroplast|GO:0009507||IEA  go_component integral to membrane|GO:0016021||IEA  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component integral to membrane|GO:0016021||ISS  go_process nickel ion transport|GO:0015675||ISS  go_function nickel ion transmembrane transporter activity|GO:0015099||ISS  product high-affinity nickel-transport family protein  note high-affinity nickel-transport family protein; FUNCTIONS IN: nickel ion transmembrane transporter activity, metal ion binding; INVOLVED IN: nickel ion transport, metal ion transport; LOCATED IN: integral to membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nickel/cobalt transporter, high-affinity (InterPro:IPR011541); BEST Arabidopsis thaliana protein match is: high-affinity nickel-transport family protein (TAIR:AT4G35080.1); Has 282 Blast hits to 282 proteins in 56 species: Archae - 5; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).  protein_id AT2G16800.1p  transcript_id AT2G16800.1  protein_id AT2G16800.1p  transcript_id AT2G16800.1  
At2g16810	chr2:007287944	0.0	C/7287944-7288831	AT2G16810.1  CDS  gene_syn T24I21.22, T24I21_22  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product F-box family protein (FBX8)  note F-box family protein (FBX8); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box protein-related (TAIR:AT2G40910.2); Has 811 Blast hits to 805 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 809; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G16810.1p  transcript_id AT2G16810.1  protein_id AT2G16810.1p  transcript_id AT2G16810.1  
At2g16820	chr2:007290104	0.0	C/7290104-7290952	AT2G16820.1  mRNA_TE_gene  pseudo  gene_syn T24I21.23, T24I21_23  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G27590.1)  
At2g16830	chr2:007291906	0.0	W/7291906-7292982	AT2G16830.1  pseudogenic_transcript  pseudo  gene_syn T24I21.24, T24I21_24  function a pseudogene whose sequence is similar to plasma membrane intrinsic protein 3 (PIP3)  note pseudogene, hypothetical protein  
At2g16832	chr2:007293623	0.0	W/7293623-7294681	AT2G16832.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 4.7e-22 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g16835	chr2:007295891	0.0	W/7295891-7295959,7296105-7296167,7296248-7296313	AT2G16835.1  CDS  gene_syn F12A24.1  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||IEA  go_function water channel activity|GO:0015250||ISS  product water channel protein, putative  note water channel protein, putative; FUNCTIONS IN: water channel activity, transporter activity; INVOLVED IN: transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Major intrinsic protein (InterPro:IPR000425); Has 616 Blast hits to 616 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 616; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G16835.1p  transcript_id AT2G16835.1  protein_id AT2G16835.1p  transcript_id AT2G16835.1  
At2g16840	chr2:007296979	0.0	W/7296979-7297863	AT2G16840.1  mRNA_TE_gene  pseudo  gene_syn F12A24.2, F12A24_2  note Transposable element gene, copia-like retrotransposon family, has a 7.7e-06 P-value blast match to GB:AAC64917 gag-pol polyprotein (Ty1_Copia-element) (Glycine max)  
At2g16850	chr2:007301647	0.0	W/7301647-7301926,7302156-7302451,7302825-7302965,7303061-7303180	AT2G16850.1  CDS  gene_syn F12A24.3, F12A24_3, PIP2;8, PIP3B, PLASMA MEMBRANE INTRINSIC PROTEIN 2;8, PLASMA MEMBRANE INTRINSIC PROTEIN 3B  gene PIP2;8  go_component membrane|GO:0016020|17432890|IDA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_function water channel activity|GO:0015250|9276952|ISS  go_function water channel activity|GO:0015250||ISS  product PIP2;8 (PLASMA MEMBRANE INTRINSIC PROTEIN 2;8); water channel  note PLASMA MEMBRANE INTRINSIC PROTEIN 2;8 (PIP2;8); FUNCTIONS IN: water channel activity; INVOLVED IN: transport; LOCATED IN: membrane; EXPRESSED IN: flower, root, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3); water channel (TAIR:AT4G35100.1); Has 6945 Blast hits to 6938 proteins in 1263 species: Archae - 57; Bacteria - 2670; Metazoa - 1273; Fungi - 293; Plants - 1495; Viruses - 2; Other Eukaryotes - 1155 (source: NCBI BLink).  protein_id AT2G16850.1p  transcript_id AT2G16850.1  protein_id AT2G16850.1p  transcript_id AT2G16850.1  
At2g16860	chr2:007305836	0.0	C/7305836-7305959,7305042-7305208,7304710-7304950,7304457-7304593,7304139-7304366	AT2G16860.1  CDS  gene_syn F12A24.4, F12A24_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product GCIP-interacting family protein  note GCIP-interacting family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: mRNA splicing factor SYF2 (InterPro:IPR013260); Has 2372 Blast hits to 1780 proteins in 215 species: Archae - 9; Bacteria - 79; Metazoa - 683; Fungi - 203; Plants - 93; Viruses - 8; Other Eukaryotes - 1297 (source: NCBI BLink).  protein_id AT2G16860.1p  transcript_id AT2G16860.1  protein_id AT2G16860.1p  transcript_id AT2G16860.1  
At2g16870	chr2:007311220	0.0	C/7311220-7311686,7310054-7311149,7309668-7309964,7308077-7309546	AT2G16870.1  CDS  gene_syn F12A24.5, F12A24_5  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: RLM1 (RESISTANCE TO LEPTOSPHAERIA MACULANS 1); ATP binding / protein binding / transmembrane receptor (TAIR:AT1G64070.1); Has 14617 Blast hits to 11221 proteins in 479 species: Archae - 17; Bacteria - 920; Metazoa - 1849; Fungi - 53; Plants - 11304; Viruses - 0; Other Eukaryotes - 474 (source: NCBI BLink).  protein_id AT2G16870.1p  transcript_id AT2G16870.1  protein_id AT2G16870.1p  transcript_id AT2G16870.1  
At2g16880	chr2:007312262	0.0	C/7312262-7314493	AT2G16880.1  CDS  gene_syn F12A24.6, F12A24_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G62670.1); Has 25497 Blast hits to 6321 proteins in 192 species: Archae - 4; Bacteria - 34; Metazoa - 1168; Fungi - 764; Plants - 22216; Viruses - 0; Other Eukaryotes - 1311 (source: NCBI BLink).  protein_id AT2G16880.1p  transcript_id AT2G16880.1  protein_id AT2G16880.1p  transcript_id AT2G16880.1  
At2g16881	chr2:007314579	0.0	C/7314579-7314713	AT2G16881.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G16881.1p  transcript_id AT2G16881.1  protein_id AT2G16881.1p  transcript_id AT2G16881.1  
At2g16890	chr2:007316938	0.0	W/7316938-7317864,7318414-7318749,7318849-7319022	AT2G16890.2  CDS  gene_syn F12A24.7, F12A24_7  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213), Tudor subgroup (InterPro:IPR018351); BEST Arabidopsis thaliana protein match is: transferase, transferring glycosyl groups (TAIR:AT5G14860.1); Has 4649 Blast hits to 4605 proteins in 328 species: Archae - 0; Bacteria - 167; Metazoa - 1679; Fungi - 16; Plants - 2672; Viruses - 91; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT2G16890.2p  transcript_id AT2G16890.2  protein_id AT2G16890.2p  transcript_id AT2G16890.2  
At2g16890	chr2:007316938	0.0	W/7316938-7317876	AT2G16890.1  CDS  gene_syn F12A24.7, F12A24_7  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213), Tudor subgroup (InterPro:IPR018351); BEST Arabidopsis thaliana protein match is: transferase, transferring glycosyl groups (TAIR:AT5G14860.1); Has 1812 Blast hits to 1798 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1812; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G16890.1p  transcript_id AT2G16890.1  protein_id AT2G16890.1p  transcript_id AT2G16890.1  
At2g16895	chr2:007319678	0.0	W/7319678-7321867	AT2G16895.1  pseudogenic_transcript  pseudo  note pseudogene, similar to unnamed protein product, blastp match of 40% identity and 5.7e-21 P-value to GP|9995047|emb|CAC07382.1||AX007155 unnamed protein product {Nicotiana tabacum}  
At2g16900	chr2:007324737	0.0	C/7324737-7324886,7323857-7324588	AT2G16900.2  CDS  gene_syn F12A24.8, F12A24_8  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35110.4); Has 280 Blast hits to 196 proteins in 46 species: Archae - 2; Bacteria - 4; Metazoa - 40; Fungi - 6; Plants - 96; Viruses - 48; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT2G16900.2p  transcript_id AT2G16900.2  protein_id AT2G16900.2p  transcript_id AT2G16900.2  
At2g16900	chr2:007324737	0.0	C/7324737-7324886,7323857-7324588	AT2G16900.3  CDS  gene_syn F12A24.8, F12A24_8  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35110.4); Has 280 Blast hits to 196 proteins in 46 species: Archae - 2; Bacteria - 4; Metazoa - 40; Fungi - 6; Plants - 96; Viruses - 48; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT2G16900.3p  transcript_id AT2G16900.3  protein_id AT2G16900.3p  transcript_id AT2G16900.3  
At2g16900	chr2:007325251	0.0	C/7325251-7325374,7324737-7325029,7323857-7324588	AT2G16900.1  CDS  gene_syn F12A24.8, F12A24_8  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35110.4); Has 353 Blast hits to 254 proteins in 60 species: Archae - 2; Bacteria - 4; Metazoa - 73; Fungi - 16; Plants - 115; Viruses - 51; Other Eukaryotes - 92 (source: NCBI BLink).  protein_id AT2G16900.1p  transcript_id AT2G16900.1  protein_id AT2G16900.1p  transcript_id AT2G16900.1  
At2g16905	chr2:007327323	0.0	C/7327323-7328985	AT2G16905.1  pseudogenic_transcript  pseudo  note pseudogene, similar to putative MATE efflux membrane protein, blastp match of 50% identity and 7.3e-40 P-value to GP|28376699|gb|AAO41129.1||AC104487 putative MATE efflux membrane protein {Oryza sativa (japonica cultivar-group)}  
At2g16910	chr2:007331721	0.0	W/7331721-7331821,7331937-7332104,7332192-7332264,7332352-7332420,7332498-7333112,7333197-7333451,7333555-7333731,7333820-7334077	AT2G16910.1  CDS  gene_syn ABORTED MICROSPORES, AMS, F12A24.9, F12A24_9  gene AMS  function Sporophytic male sterile; MYC Transcription Factor  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product AMS (ABORTED MICROSPORES); DNA binding / transcription factor  note ABORTED MICROSPORES (AMS); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: leaf whorl, petal, sepal, flower, seed; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT1G10610.1); Has 3431 Blast hits to 2726 proteins in 288 species: Archae - 4; Bacteria - 239; Metazoa - 486; Fungi - 53; Plants - 1867; Viruses - 0; Other Eukaryotes - 782 (source: NCBI BLink).  protein_id AT2G16910.1p  transcript_id AT2G16910.1  protein_id AT2G16910.1p  transcript_id AT2G16910.1  
At2g16920	chr2:007336890	0.0	C/7336890-7338827,7336277-7336414,7335665-7336120,7335522-7335591,7335293-7335432,7334890-7335201,7334559-7334813	AT2G16920.1  CDS  gene_syn F12A24.10, F12A24_10, PFU2, PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, UBC23, UBIQUITIN-CONJUGATING ENZYME 23  gene UBC23  go_process post-translational protein modification|GO:0043687||IEA  go_process regulation of protein metabolic process|GO:0051246||IEA  go_function small conjugating protein ligase activity|GO:0019787||IEA  go_component cellular_component|GO:0005575||ND  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC23 (UBIQUITIN-CONJUGATING ENZYME 23); small conjugating protein ligase/ ubiquitin-protein ligase  note UBIQUITIN-CONJUGATING ENZYME 23 (UBC23); FUNCTIONS IN: ubiquitin-protein ligase activity, small conjugating protein ligase activity; INVOLVED IN: regulation of protein metabolic process, post-translational protein modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: PHO2 (PHOSPHATE 2); ubiquitin-protein ligase (TAIR:AT2G33770.1); Has 11735 Blast hits to 8063 proteins in 390 species: Archae - 7; Bacteria - 1481; Metazoa - 4578; Fungi - 1743; Plants - 1093; Viruses - 165; Other Eukaryotes - 2668 (source: NCBI BLink).  protein_id AT2G16920.1p  transcript_id AT2G16920.1  protein_id AT2G16920.1p  transcript_id AT2G16920.1  
At2g16930	chr2:007341492	0.0	W/7341492-7341588,7341669-7341793,7341876-7342118	AT2G16930.1  CDS  gene_syn F12A24.11, F12A24_11  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L27 family protein  note ribosomal protein L27 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein L27 (InterPro:IPR001684), Ribosomal protein L27, conserved site (InterPro:IPR018261); BEST Arabidopsis thaliana protein match is: ribosomal protein L27 family protein (TAIR:AT5G15220.1); Has 5103 Blast hits to 5103 proteins in 1534 species: Archae - 0; Bacteria - 2966; Metazoa - 94; Fungi - 93; Plants - 70; Viruses - 0; Other Eukaryotes - 1880 (source: NCBI BLink).  protein_id AT2G16930.1p  transcript_id AT2G16930.1  protein_id AT2G16930.1p  transcript_id AT2G16930.1  
At2g16930	chr2:007341492	0.0	W/7341492-7341588,7341669-7341793,7341876-7342118	AT2G16930.2  CDS  gene_syn F12A24.11, F12A24_11  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L27 family protein  note ribosomal protein L27 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein L27 (InterPro:IPR001684), Ribosomal protein L27, conserved site (InterPro:IPR018261); BEST Arabidopsis thaliana protein match is: ribosomal protein L27 family protein (TAIR:AT5G15220.1); Has 5103 Blast hits to 5103 proteins in 1534 species: Archae - 0; Bacteria - 2966; Metazoa - 94; Fungi - 93; Plants - 70; Viruses - 0; Other Eukaryotes - 1880 (source: NCBI BLink).  protein_id AT2G16930.2p  transcript_id AT2G16930.2  protein_id AT2G16930.2p  transcript_id AT2G16930.2  
At2g16930	chr2:007341492	0.0	W/7341492-7341588,7341669-7341793,7341876-7342118	AT2G16930.3  CDS  gene_syn F12A24.11, F12A24_11  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L27 family protein  note ribosomal protein L27 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein L27 (InterPro:IPR001684), Ribosomal protein L27, conserved site (InterPro:IPR018261); BEST Arabidopsis thaliana protein match is: ribosomal protein L27 family protein (TAIR:AT5G15220.1); Has 5103 Blast hits to 5103 proteins in 1534 species: Archae - 0; Bacteria - 2966; Metazoa - 94; Fungi - 93; Plants - 70; Viruses - 0; Other Eukaryotes - 1880 (source: NCBI BLink).  protein_id AT2G16930.3p  transcript_id AT2G16930.3  protein_id AT2G16930.3p  transcript_id AT2G16930.3  
At2g16940	chr2:007346571	0.0	C/7346571-7347052,7345695-7345776,7345557-7345613,7345400-7345455,7344966-7345197,7344674-7344757,7344504-7344578,7344087-7344176,7343710-7343774,7343411-7343621,7343237-7343325,7343025-7343139,7342869-7342916	AT2G16940.1  CDS  gene_syn F12A24.12, F12A24_12  go_component nucleus|GO:0005634||IEA  go_process mRNA processing|GO:0006397||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function nucleic acid binding|GO:0003676||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Splicing factor, CC1-like (InterPro:IPR006509), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT5G09880.1); Has 89001 Blast hits to 40771 proteins in 1338 species: Archae - 64; Bacteria - 6713; Metazoa - 47814; Fungi - 9285; Plants - 6716; Viruses - 445; Other Eukaryotes - 17964 (source: NCBI BLink).  protein_id AT2G16940.1p  transcript_id AT2G16940.1  protein_id AT2G16940.1p  transcript_id AT2G16940.1  
At2g16950	chr2:007353939	0.0	W/7353939-7354124,7354907-7355194,7355367-7355456,7355585-7355662,7355750-7355830,7356006-7356056,7356205-7356290,7356407-7356473,7356572-7356628,7356721-7356750,7356833-7356892,7357005-7357118,7357189-7357302,7357395-7357493,7357571-7357696,7357778-7357852,7357967-7358038,7358173-7358283,7358608-7358691,7358835-7358942,7359142-7359243,7359398-7359460,7359537-7359611,7359699-7359770,7359876-7360000,7360084-7360135,7360213-7360281,7360381-7360440,7360557-7360637	AT2G16950.2  CDS  gene_syn ATTRN1, F12A24.13, F12A24_13, TRANSPORTIN 1, TRN1  gene TRN1  function Nuclear import receptor for AtGRP7.  go_component nucleus|GO:0005634|14756317|IDA  go_component nucleus|GO:0005634||ISS  go_component nuclear pore|GO:0005643||ISS  go_component cytoplasm|GO:0005737|14756317|IDA  go_component cytoplasm|GO:0005737||ISS  go_process protein import into nucleus, docking|GO:0000059||ISS  go_process nuclear import|GO:0051170|14756317|IDA  go_function protein transporter activity|GO:0008565|14756317|IDA  go_function protein transporter activity|GO:0008565||ISS  product TRN1 (TRANSPORTIN 1); protein transporter  note TRANSPORTIN 1 (TRN1); FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein import into nucleus, docking, nuclear import; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: importin beta-2 subunit family protein (TAIR:AT2G16960.1); Has 1349 Blast hits to 1302 proteins in 161 species: Archae - 0; Bacteria - 2; Metazoa - 631; Fungi - 370; Plants - 131; Viruses - 0; Other Eukaryotes - 215 (source: NCBI BLink).  protein_id AT2G16950.2p  transcript_id AT2G16950.2  protein_id AT2G16950.2p  transcript_id AT2G16950.2  
At2g16950	chr2:007353939	0.0	W/7353939-7354124,7354907-7355194,7355367-7355456,7355585-7355666,7355742-7355830,7356006-7356056,7356205-7356290,7356407-7356473,7356572-7356628,7356721-7356750,7356833-7356892,7357005-7357118,7357189-7357302,7357395-7357493,7357571-7357696,7357778-7357852,7357967-7358038,7358173-7358283,7358608-7358691,7358835-7358942,7359142-7359243,7359398-7359460,7359537-7359611,7359699-7359770,7359876-7360000,7360084-7360135,7360213-7360281,7360381-7360440,7360557-7360637	AT2G16950.1  CDS  gene_syn ATTRN1, F12A24.13, F12A24_13, TRANSPORTIN 1, TRN1  gene TRN1  function Nuclear import receptor for AtGRP7.  go_component nucleus|GO:0005634|14756317|IDA  go_component nucleus|GO:0005634||ISS  go_component nuclear pore|GO:0005643||ISS  go_component cytoplasm|GO:0005737|14756317|IDA  go_component cytoplasm|GO:0005737||ISS  go_process protein import into nucleus, docking|GO:0000059||ISS  go_process nuclear import|GO:0051170|14756317|IDA  go_function protein transporter activity|GO:0008565|14756317|IDA  go_function protein transporter activity|GO:0008565||ISS  product TRN1 (TRANSPORTIN 1); protein transporter  note TRANSPORTIN 1 (TRN1); FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein import into nucleus, docking, nuclear import; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: importin beta-2 subunit family protein (TAIR:AT2G16960.1); Has 1326 Blast hits to 1279 proteins in 161 species: Archae - 0; Bacteria - 2; Metazoa - 608; Fungi - 366; Plants - 131; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).  protein_id AT2G16950.1p  transcript_id AT2G16950.1  protein_id AT2G16950.1p  transcript_id AT2G16950.1  
At2g16955	chr2:007363121	0.0	C/7363121-7363312	AT2G16955.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G16955.1p  transcript_id AT2G16955.1  protein_id AT2G16955.1p  transcript_id AT2G16955.1  
At2g16960	chr2:007364683	0.0	W/7364683-7364724,7364804-7364833,7365042-7365152,7365223-7365336,7365420-7365518,7365601-7365723,7366346-7366420,7366513-7366584,7366691-7366801,7367490-7367591,7367710-7367772,7367849-7367923,7368010-7368081,7368162-7368322,7368414-7368465,7368548-7368616,7368712-7368771,7368877-7368963	AT2G16960.2  CDS  gene_syn F12A24.14, F12A24_14  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein transporter activity|GO:0008565||ISS  product importin beta-2 subunit family protein  note importin beta-2 subunit family protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: TRN1 (TRANSPORTIN 1); protein transporter (TAIR:AT2G16950.2); Has 1000 Blast hits to 967 proteins in 159 species: Archae - 0; Bacteria - 2; Metazoa - 481; Fungi - 257; Plants - 108; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).  protein_id AT2G16960.2p  transcript_id AT2G16960.2  protein_id AT2G16960.2p  transcript_id AT2G16960.2  
At2g16960	chr2:007364683	0.0	W/7364683-7364724,7365057-7365152,7365223-7365330,7365420-7365518,7365601-7365723,7366346-7366420,7366513-7366584,7366691-7366801,7367032-7367115,7367230-7367337,7367490-7367591,7367849-7367923,7367962-7368081,7368162-7368322,7368414-7368465,7368548-7368616,7368712-7368771,7368877-7368963	AT2G16960.1  CDS  gene_syn F12A24.14, F12A24_14  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein transporter activity|GO:0008565||ISS  product importin beta-2 subunit family protein  note importin beta-2 subunit family protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: TRN1 (TRANSPORTIN 1); protein transporter (TAIR:AT2G16950.2); Has 874 Blast hits to 868 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 452; Fungi - 216; Plants - 99; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT2G16960.1p  transcript_id AT2G16960.1  protein_id AT2G16960.1p  transcript_id AT2G16960.1  
At2g16970	chr2:007369549	0.0	W/7369549-7369722,7370558-7370669,7372377-7372447,7372586-7372708,7372859-7373103,7373201-7373276,7373374-7373460,7373546-7373626,7373724-7373756,7374005-7374058,7374147-7374188,7375057-7375135,7375281-7375351,7375436-7375528	AT2G16970.1  CDS  gene_syn F12A24.15, F12A24_15, MEE15, maternal effect embryo arrest 15  gene MEE15  go_component integral to membrane|GO:0016021||IEA  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function tetracycline transporter activity|GO:0008493||ISS  product MEE15 (maternal effect embryo arrest 15); tetracycline transporter  note maternal effect embryo arrest 15 (MEE15); FUNCTIONS IN: tetracycline transporter activity; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetracycline resistance protein, TetA (InterPro:IPR001958), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: tetracycline transporter (TAIR:AT2G16980.2); Has 1350 Blast hits to 1349 proteins in 580 species: Archae - 0; Bacteria - 833; Metazoa - 197; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 274 (source: NCBI BLink).  protein_id AT2G16970.1p  transcript_id AT2G16970.1  protein_id AT2G16970.1p  transcript_id AT2G16970.1  
At2g16980	chr2:007376376	0.0	W/7376376-7376549,7376704-7376815,7378083-7378195,7378293-7378415,7378679-7378923,7379003-7379078,7379167-7379253,7379344-7379424,7379509-7379541,7379695-7379748,7379831-7379872,7380439-7380517,7380683-7380753,7380849-7380944	AT2G16980.2  CDS  gene_syn F12A24.16, F12A24_16  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process tetracycline transport|GO:0015904||IEA  go_process response to antibiotic|GO:0046677||IEA  go_function tetracycline transporter activity|GO:0008493||ISS  product tetracycline transporter  note tetracycline transporter; FUNCTIONS IN: tetracycline transporter activity; INVOLVED IN: response to antibiotic, tetracycline transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: inflorescence meristem, male gametophyte, hypocotyl, flower, root; EXPRESSED DURING: L mature pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Tetracycline resistance protein, TetA (InterPro:IPR001958), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: MEE15 (maternal effect embryo arrest 15); tetracycline transporter (TAIR:AT2G16970.1); Has 1587 Blast hits to 1585 proteins in 635 species: Archae - 8; Bacteria - 1006; Metazoa - 211; Fungi - 5; Plants - 45; Viruses - 0; Other Eukaryotes - 312 (source: NCBI BLink).  protein_id AT2G16980.2p  transcript_id AT2G16980.2  protein_id AT2G16980.2p  transcript_id AT2G16980.2  
At2g16980	chr2:007376376	0.0	W/7376376-7376549,7376704-7376815,7378083-7378195,7378293-7378415,7378679-7378923,7379003-7379078,7379167-7379253,7379344-7379424,7379509-7379541,7379695-7379748,7379831-7379872,7380439-7380525	AT2G16980.1  CDS  gene_syn F12A24.16, F12A24_16  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process tetracycline transport|GO:0015904||IEA  go_process response to antibiotic|GO:0046677||IEA  go_function tetracycline transporter activity|GO:0008493||ISS  product tetracycline transporter  note tetracycline transporter; FUNCTIONS IN: tetracycline transporter activity; INVOLVED IN: response to antibiotic, tetracycline transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: inflorescence meristem, male gametophyte, hypocotyl, flower, root; EXPRESSED DURING: L mature pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Tetracycline resistance protein, TetA (InterPro:IPR001958), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: MEE15 (maternal effect embryo arrest 15); tetracycline transporter (TAIR:AT2G16970.1); Has 1410 Blast hits to 1410 proteins in 583 species: Archae - 8; Bacteria - 894; Metazoa - 205; Fungi - 1; Plants - 45; Viruses - 0; Other Eukaryotes - 257 (source: NCBI BLink).  protein_id AT2G16980.1p  transcript_id AT2G16980.1  protein_id AT2G16980.1p  transcript_id AT2G16980.1  
At2g16990	chr2:007383194	0.0	W/7383194-7383364,7384138-7384249,7385435-7385547,7385649-7385771,7385881-7386116,7386203-7386278,7386377-7386463,7386579-7386659,7386763-7386795,7386878-7386931,7387221-7387262,7387365-7387443,7387534-7387604,7387691-7387783	AT2G16990.1  CDS  gene_syn F6P23.2, F6P23_2  go_component endomembrane system|GO:0012505||IEA  go_function tetracycline transporter activity|GO:0008493||ISS  product tetracycline transporter  note tetracycline transporter; FUNCTIONS IN: tetracycline transporter activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: tetracycline transporter (TAIR:AT2G16980.2); Has 1774 Blast hits to 1774 proteins in 686 species: Archae - 10; Bacteria - 1126; Metazoa - 256; Fungi - 12; Plants - 46; Viruses - 0; Other Eukaryotes - 324 (source: NCBI BLink).  protein_id AT2G16990.1p  transcript_id AT2G16990.1  protein_id AT2G16990.1p  transcript_id AT2G16990.1  
At2g16990	chr2:007383194	0.0	W/7383194-7383364,7384138-7384249,7385435-7385547,7385649-7385771,7385881-7386116,7386203-7386278,7386377-7386463,7386579-7386659,7386763-7386795,7386878-7386931,7387221-7387262,7387365-7387443,7387534-7387604,7387691-7387783	AT2G16990.2  CDS  gene_syn F6P23.2, F6P23_2  go_component endomembrane system|GO:0012505||IEA  go_function tetracycline transporter activity|GO:0008493||ISS  product tetracycline transporter  note tetracycline transporter; FUNCTIONS IN: tetracycline transporter activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: tetracycline transporter (TAIR:AT2G16980.2); Has 1774 Blast hits to 1774 proteins in 686 species: Archae - 10; Bacteria - 1126; Metazoa - 256; Fungi - 12; Plants - 46; Viruses - 0; Other Eukaryotes - 324 (source: NCBI BLink).  protein_id AT2G16990.2p  transcript_id AT2G16990.2  protein_id AT2G16990.2p  transcript_id AT2G16990.2  
At2g17000	chr2:007390493	0.0	C/7390493-7392105,7390285-7390408,7389910-7390203,7389622-7389824,7389244-7389534,7388893-7388917	AT2G17000.1  CDS  gene_syn F6P23.16, F6P23_16  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein  note mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: embryo, sepal, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Membrane protein, At2g17000, predicted (InterPro:IPR016688), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: MSL6 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 6) (TAIR:AT1G78610.1); Has 1249 Blast hits to 1245 proteins in 425 species: Archae - 44; Bacteria - 812; Metazoa - 0; Fungi - 127; Plants - 89; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).  protein_id AT2G17000.1p  transcript_id AT2G17000.1  protein_id AT2G17000.1p  transcript_id AT2G17000.1  
At2g17010	chr2:007394742	0.0	C/7394742-7395970,7394157-7394354,7393954-7394077,7393562-7393855,7393279-7393481,7392914-7393205	AT2G17010.1  CDS  gene_syn F6P23.17, F6P23_17  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein  note mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Membrane protein, At2g17000, predicted (InterPro:IPR016688), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920), Mechanosensitive ion channel MscS (InterPro:IPR006685); BEST Arabidopsis thaliana protein match is: mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein (TAIR:AT2G17000.1); Has 1429 Blast hits to 1371 proteins in 459 species: Archae - 91; Bacteria - 851; Metazoa - 4; Fungi - 123; Plants - 136; Viruses - 0; Other Eukaryotes - 224 (source: NCBI BLink).  protein_id AT2G17010.1p  transcript_id AT2G17010.1  protein_id AT2G17010.1p  transcript_id AT2G17010.1  
At2g17020	chr2:007398578	0.0	C/7398578-7398787,7398283-7398488,7398112-7398205,7396559-7398019	AT2G17020.1  CDS  gene_syn F6P23.18, F6P23_18  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product F-box family protein (FBL10)  note F-box family protein (FBL10); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G55590.1); Has 3438 Blast hits to 1768 proteins in 156 species: Archae - 0; Bacteria - 361; Metazoa - 1728; Fungi - 342; Plants - 688; Viruses - 3; Other Eukaryotes - 316 (source: NCBI BLink).  protein_id AT2G17020.1p  transcript_id AT2G17020.1  protein_id AT2G17020.1p  transcript_id AT2G17020.1  
At2g17030	chr2:007399108	0.0	W/7399108-7400289,7400609-7400650	AT2G17030.1  CDS  gene_syn F6P23.19, F6P23_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G17036.1); Has 242 Blast hits to 238 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 242; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G17030.1p  transcript_id AT2G17030.1  protein_id AT2G17030.1p  transcript_id AT2G17030.1  
At2g17033	chr2:007401205	0.0	W/7401205-7401232,7401633-7402054,7402143-7403207	AT2G17033.1  CDS  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53170.1); Has 933 Blast hits to 713 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 920; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT2G17033.1p  transcript_id AT2G17033.1  protein_id AT2G17033.1p  transcript_id AT2G17033.1  
At2g17033	chr2:007401205	0.0	W/7401205-7401235,7401633-7402054,7402143-7403207	AT2G17033.2  CDS  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53170.1); Has 936 Blast hits to 713 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 923; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT2G17033.2p  transcript_id AT2G17033.2  protein_id AT2G17033.2p  transcript_id AT2G17033.2  
At2g17036	chr2:007403856	0.0	W/7403856-7405057,7405135-7405219	AT2G17036.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G17030.1); Has 190 Blast hits to 187 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 190; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G17036.1p  transcript_id AT2G17036.1  protein_id AT2G17036.1p  transcript_id AT2G17036.1  
At2g17040	chr2:007407123	0.0	W/7407123-7407279,7407363-7407631,7407716-7408120	AT2G17040.1  CDS  gene_syn Arabidopsis NAC domain containing protein 36, F6P23.7, F6P23_7, anac036  gene anac036  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_process response to chitin|GO:0010200|17722694|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac036 (Arabidopsis NAC domain containing protein 36); transcription factor  note Arabidopsis NAC domain containing protein 36 (anac036); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, response to chitin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC035 (Arabidopsis NAC domain containing protein 35); transcription factor (TAIR:AT2G02450.2); Has 1550 Blast hits to 1547 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1550; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G17040.1p  transcript_id AT2G17040.1  protein_id AT2G17040.1p  transcript_id AT2G17040.1  
At2g17043	chr2:007409200	0.0	W/7409200-7409442	AT2G17043.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17070.1).  protein_id AT2G17043.1p  transcript_id AT2G17043.1  protein_id AT2G17043.1p  transcript_id AT2G17043.1  
At2g17050	chr2:007414543	0.0	C/7414543-7415610,7414151-7414450,7412643-7414064,7412359-7412552,7411989-7412265,7411305-7411852,7410835-7411093	AT2G17050.1  CDS  gene_syn F6P23.20, F6P23_20  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: protein binding, transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat 3 (InterPro:IPR011713), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G19520.1); Has 22814 Blast hits to 13165 proteins in 607 species: Archae - 22; Bacteria - 1409; Metazoa - 4163; Fungi - 196; Plants - 15977; Viruses - 6; Other Eukaryotes - 1041 (source: NCBI BLink).  protein_id AT2G17050.1p  transcript_id AT2G17050.1  protein_id AT2G17050.1p  transcript_id AT2G17050.1  
At2g17055	chr2:007418052	0.0	C/7418052-7418462	AT2G17055.1  CDS  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  product disease resistance protein-related  note disease resistance protein-related; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: ATP binding / protein binding / transmembrane receptor (TAIR:AT3G51560.1); Has 371 Blast hits to 369 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 371; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G17055.1p  transcript_id AT2G17055.1  protein_id AT2G17055.1p  transcript_id AT2G17055.1  
At2g17060	chr2:007422411	0.0	W/7422411-7422895,7423443-7424676,7424764-7425078,7425159-7426124,7426216-7426477,7426552-7426877	AT2G17060.1  CDS  gene_syn F6P23.21, F6P23_21  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: protein binding, transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat 3 (InterPro:IPR011713), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G36150.1); Has 16102 Blast hits to 11986 proteins in 458 species: Archae - 12; Bacteria - 808; Metazoa - 1934; Fungi - 67; Plants - 12718; Viruses - 10; Other Eukaryotes - 553 (source: NCBI BLink).  protein_id AT2G17060.1p  transcript_id AT2G17060.1  protein_id AT2G17060.1p  transcript_id AT2G17060.1  
At2g17064	chr2:007428623	0.0	W/7428623-7429916	AT2G17064.1  pseudogenic_transcript  pseudo  function Pseudogene of AT2G17080  
At2g17070	chr2:007430863	0.0	C/7430863-7431654	AT2G17070.1  CDS  gene_syn F6P23.22, F6P23_22  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF241, plant (InterPro:IPR004320); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17080.1); Has 334 Blast hits to 330 proteins in 26 species: Archae - 0; Bacteria - 5; Metazoa - 41; Fungi - 5; Plants - 273; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT2G17070.1p  transcript_id AT2G17070.1  protein_id AT2G17070.1p  transcript_id AT2G17070.1  
At2g17080	chr2:007433326	0.0	C/7433326-7434117	AT2G17080.1  CDS  gene_syn F6P23.10, F6P23_10  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF241, plant (InterPro:IPR004320); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17070.1); Has 468 Blast hits to 460 proteins in 67 species: Archae - 0; Bacteria - 21; Metazoa - 74; Fungi - 25; Plants - 280; Viruses - 2; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT2G17080.1p  transcript_id AT2G17080.1  protein_id AT2G17080.1p  transcript_id AT2G17080.1  
At2g17090	chr2:007437023	0.0	C/7437023-7437298,7436809-7436944,7436484-7436617,7436335-7436401,7436179-7436264,7435842-7436030,7435599-7435760,7435400-7435513,7435088-7435321	AT2G17090.1  CDS  gene_syn F6P23.23, F6P23_23, SHORT SUSPENSOR, SSP  gene SSP  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function binding|GO:0005488||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product SSP (SHORT SUSPENSOR); ATP binding / binding / kinase/ protein kinase/ protein tyrosine kinase  note SHORT SUSPENSOR (SSP); FUNCTIONS IN: protein tyrosine kinase activity, binding, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: BSK1 (BR-SIGNALING KINASE 1); ATP binding / binding / kinase/ protein kinase/ protein tyrosine kinase (TAIR:AT4G35230.1); Has 14470 Blast hits to 14307 proteins in 452 species: Archae - 0; Bacteria - 260; Metazoa - 2489; Fungi - 25; Plants - 11316; Viruses - 47; Other Eukaryotes - 333 (source: NCBI BLink).  protein_id AT2G17090.1p  transcript_id AT2G17090.1  protein_id AT2G17090.1p  transcript_id AT2G17090.1  
At2g17110	chr2:007444928	0.0	C/7444928-7445969,7444508-7444725,7444174-7444397,7443366-7444083	AT2G17110.1  CDS  gene_syn F6P23.12, F6P23_12  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35240.1); Has 322 Blast hits to 295 proteins in 50 species: Archae - 0; Bacteria - 11; Metazoa - 44; Fungi - 12; Plants - 245; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT2G17110.1p  transcript_id AT2G17110.1  protein_id AT2G17110.1p  transcript_id AT2G17110.1  
At2g17115	chr2:007448945	0.0	C/7448945-7453891	AT2G17115.1  mRNA_TE_gene  pseudo  gene_syn F6P23.24  note Transposable element gene, copia-like retrotransposon family, has a 1.3e-251 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At2g17120	chr2:007459156	0.0	W/7459156-7459813,7460061-7460181,7460287-7460459,7460548-7460648	AT2G17120.1  CDS  gene_syn F6P23.25, F6P23_25, LYM2, LYSM DOMAIN GPI-ANCHORED PROTEIN 2 PRECURSOR  gene LYM2  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component anchored to plasma membrane|GO:0046658|12805588|IDA  go_process cell wall macromolecule catabolic process|GO:0016998||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process cell wall macromolecule catabolic process|GO:0016998||ISS  go_function molecular_function|GO:0003674||ND  product LYM2 (LYSM DOMAIN GPI-ANCHORED PROTEIN 2 PRECURSOR)  note LYSM DOMAIN GPI-ANCHORED PROTEIN 2 PRECURSOR (LYM2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482); BEST Arabidopsis thaliana protein match is: LYM1 (LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR) (TAIR:AT1G21880.2); Has 292 Blast hits to 278 proteins in 64 species: Archae - 0; Bacteria - 109; Metazoa - 0; Fungi - 0; Plants - 168; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT2G17120.1p  transcript_id AT2G17120.1  protein_id AT2G17120.1p  transcript_id AT2G17120.1  
At2g17130	chr2:007461957	0.0	C/7461957-7462466,7461584-7461811,7461426-7461504,7461062-7461336	AT2G17130.2  CDS  gene_syn F6P23.14, F6P23_14, IDH2, ISOCITRATE DEHYDROGENASE SUBUNIT 2, NAD+ DEPENDENT ISOCITRATE DEHYDROGENASE SUBUNIT 2  gene IDH2  function NAD+ dependent isocitrate dehydrogenase subunit 2 (IDH2)  go_process tricarboxylic acid cycle|GO:0006099||IEA  go_process metabolic process|GO:0008152||IEA  go_function isocitrate dehydrogenase (NAD+) activity|GO:0004449||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process metabolic process|GO:0008152||ISS  go_function isocitrate dehydrogenase (NAD+) activity|GO:0004449||ISS  product IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2); isocitrate dehydrogenase (NAD+)/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor  note ISOCITRATE DEHYDROGENASE SUBUNIT 2 (IDH2); FUNCTIONS IN: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, isocitrate dehydrogenase (NAD+) activity; INVOLVED IN: tricarboxylic acid cycle, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804), Isocitrate dehydrogenase NAD-dependent, mitochondrial (InterPro:IPR004434); BEST Arabidopsis thaliana protein match is: IDH1 (ISOCITRATE DEHYDROGENASE 1); isocitrate dehydrogenase (NAD+)/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor (TAIR:AT4G35260.1); Has 11379 Blast hits to 11266 proteins in 1598 species: Archae - 252; Bacteria - 5629; Metazoa - 524; Fungi - 569; Plants - 152; Viruses - 0; Other Eukaryotes - 4253 (source: NCBI BLink).  protein_id AT2G17130.2p  transcript_id AT2G17130.2  protein_id AT2G17130.2p  transcript_id AT2G17130.2  
At2g17130	chr2:007461957	0.0	C/7461957-7462466,7461584-7461823,7461426-7461504,7461062-7461336	AT2G17130.1  CDS  gene_syn F6P23.14, F6P23_14, IDH2, ISOCITRATE DEHYDROGENASE SUBUNIT 2, NAD+ DEPENDENT ISOCITRATE DEHYDROGENASE SUBUNIT 2  gene IDH2  function NAD+ dependent isocitrate dehydrogenase subunit 2 (IDH2)  go_process tricarboxylic acid cycle|GO:0006099||IEA  go_process metabolic process|GO:0008152||IEA  go_function isocitrate dehydrogenase (NAD+) activity|GO:0004449||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process metabolic process|GO:0008152||ISS  go_function isocitrate dehydrogenase (NAD+) activity|GO:0004449||ISS  product IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2); isocitrate dehydrogenase (NAD+)/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor  note ISOCITRATE DEHYDROGENASE SUBUNIT 2 (IDH2); FUNCTIONS IN: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, isocitrate dehydrogenase (NAD+) activity; INVOLVED IN: tricarboxylic acid cycle, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804), Isocitrate dehydrogenase NAD-dependent, mitochondrial (InterPro:IPR004434); BEST Arabidopsis thaliana protein match is: IDH1 (ISOCITRATE DEHYDROGENASE 1); isocitrate dehydrogenase (NAD+)/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor (TAIR:AT4G35260.1); Has 11402 Blast hits to 11289 proteins in 1598 species: Archae - 252; Bacteria - 5627; Metazoa - 524; Fungi - 565; Plants - 152; Viruses - 0; Other Eukaryotes - 4282 (source: NCBI BLink).  protein_id AT2G17130.1p  transcript_id AT2G17130.1  protein_id AT2G17130.1p  transcript_id AT2G17130.1  
At2g17140	chr2:007462820	0.0	W/7462820-7465317,7465614-7465740	AT2G17140.1  CDS  gene_syn F6P23.26, F6P23_26  product unknown protein  note EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G62910.1); Has 25910 Blast hits to 6027 proteins in 187 species: Archae - 6; Bacteria - 20; Metazoa - 625; Fungi - 635; Plants - 23410; Viruses - 0; Other Eukaryotes - 1214 (source: NCBI BLink).  protein_id AT2G17140.1p  transcript_id AT2G17140.1  protein_id AT2G17140.1p  transcript_id AT2G17140.1  
At2g17150	chr2:007469700	0.0	C/7469700-7470533,7469302-7469349,7468131-7469213	AT2G17150.2  CDS  gene_syn F6P23.15, F6P23_15  go_function transcription factor activity|GO:0003700|11118137|ISS  product RWP-RK domain-containing protein  note RWP-RK domain-containing protein; FUNCTIONS IN: transcription factor activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: RWP-RK domain-containing protein (TAIR:AT4G35270.1); Has 163 Blast hits to 160 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 161; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G17150.2p  transcript_id AT2G17150.2  protein_id AT2G17150.2p  transcript_id AT2G17150.2  
At2g17150	chr2:007469700	0.0	C/7469700-7470533,7469302-7469349,7468214-7469222,7467049-7467887	AT2G17150.1  CDS  gene_syn F6P23.15, F6P23_15  go_function transcription factor activity|GO:0003700|11118137|ISS  product RWP-RK domain-containing protein  note RWP-RK domain-containing protein; FUNCTIONS IN: transcription factor activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: RWP-RK domain-containing protein (TAIR:AT4G35270.1); Has 299 Blast hits to 286 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 276; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT2G17150.1p  transcript_id AT2G17150.1  protein_id AT2G17150.1p  transcript_id AT2G17150.1  
At2g17160	chr2:007472754	0.0	W/7472754-7472786,7473524-7473712,7473947-7474012	AT2G17160.1  CDS  gene_syn T23A1.2, T23A1_2  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  product protein kinase-related  note protein kinase-related; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G17170.1); Has 33 Blast hits to 33 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G17160.1p  transcript_id AT2G17160.1  protein_id AT2G17160.1p  transcript_id AT2G17160.1  
At2g17170	chr2:007474736	0.0	W/7474736-7475029,7475099-7475234,7475555-7475682,7475762-7475831,7475901-7475986,7476083-7476274,7476358-7476438	AT2G17170.1  CDS  gene_syn T23A1.3, T23A1_3  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: SSP (SHORT SUSPENSOR); ATP binding / binding / kinase/ protein kinase/ protein tyrosine kinase (TAIR:AT2G17090.1); Has 11930 Blast hits to 11784 proteins in 320 species: Archae - 2; Bacteria - 78; Metazoa - 1096; Fungi - 9; Plants - 10497; Viruses - 17; Other Eukaryotes - 231 (source: NCBI BLink).  protein_id AT2G17170.1p  transcript_id AT2G17170.1  protein_id AT2G17170.1p  transcript_id AT2G17170.1  
At2g17180	chr2:007476835	0.0	C/7476835-7477647	AT2G17180.1  CDS  gene_syn T23A1.4, T23A1_4  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT4G35280.1); Has 3555 Blast hits to 2812 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 2910; Fungi - 0; Plants - 592; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT2G17180.1p  transcript_id AT2G17180.1  protein_id AT2G17180.1p  transcript_id AT2G17180.1  
At2g17190	chr2:007481133	0.0	C/7481133-7481361,7480009-7480755,7479511-7479713,7479313-7479426,7479155-7479210,7478737-7478765,7478503-7478592,7478272-7478420	AT2G17190.1  CDS  gene_syn T23A1.5, T23A1_5  go_process protein modification process|GO:0006464||IEA  go_function molecular_function|GO:0003674||ND  product ubiquitin family protein  note ubiquitin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquilin (InterPro:IPR015496), Ubiquitin (InterPro:IPR000626), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: ubiquitin family protein (TAIR:AT2G17200.1); Has 8273 Blast hits to 4684 proteins in 635 species: Archae - 6; Bacteria - 189; Metazoa - 3590; Fungi - 1163; Plants - 1579; Viruses - 154; Other Eukaryotes - 1592 (source: NCBI BLink).  protein_id AT2G17190.1p  transcript_id AT2G17190.1  protein_id AT2G17190.1p  transcript_id AT2G17190.1  
At2g17200	chr2:007484862	0.0	C/7484862-7485090,7483985-7484749,7483458-7483690,7483268-7483381,7483035-7483087,7482614-7482642,7482358-7482441,7482133-7482281	AT2G17200.1  CDS  gene_syn T23A1.6, T23A1_6  go_process protein modification process|GO:0006464||IEA  go_function molecular_function|GO:0003674||ND  product ubiquitin family protein  note ubiquitin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquilin (InterPro:IPR015496), Ubiquitin (InterPro:IPR000626), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: ubiquitin family protein (TAIR:AT2G17190.1); Has 11842 Blast hits to 6071 proteins in 720 species: Archae - 6; Bacteria - 2895; Metazoa - 3957; Fungi - 1228; Plants - 1619; Viruses - 162; Other Eukaryotes - 1975 (source: NCBI BLink).  protein_id AT2G17200.1p  transcript_id AT2G17200.1  protein_id AT2G17200.1p  transcript_id AT2G17200.1  
At2g17210	chr2:007487413	0.0	C/7487413-7487602,7485398-7487355	AT2G17210.1  CDS  gene_syn T23A1.7, T23A1_7  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: N-terminal protein myristoylation; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: DOT4 (DEFECTIVELY ORGANIZED TRIBUTARIES 4) (TAIR:AT4G18750.1); Has 15734 Blast hits to 4905 proteins in 125 species: Archae - 0; Bacteria - 6; Metazoa - 61; Fungi - 43; Plants - 15262; Viruses - 0; Other Eukaryotes - 362 (source: NCBI BLink).  protein_id AT2G17210.1p  transcript_id AT2G17210.1  protein_id AT2G17210.1p  transcript_id AT2G17210.1  
At2g17220	chr2:007489693	0.0	C/7489693-7489768,7489044-7489375,7488808-7488943,7488578-7488720,7488373-7488496,7487866-7488296	AT2G17220.2  CDS  gene_syn T23A1.8, T23A1_8  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT1G76360.1); Has 82986 Blast hits to 81862 proteins in 2869 species: Archae - 42; Bacteria - 7497; Metazoa - 36844; Fungi - 6252; Plants - 18390; Viruses - 323; Other Eukaryotes - 13638 (source: NCBI BLink).  protein_id AT2G17220.2p  transcript_id AT2G17220.2  protein_id AT2G17220.2p  transcript_id AT2G17220.2  
At2g17220	chr2:007489693	0.0	C/7489693-7489768,7489044-7489378,7488808-7488943,7488578-7488720,7488373-7488496,7487866-7488296	AT2G17220.1  CDS  gene_syn T23A1.8, T23A1_8  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT1G76360.1); Has 83008 Blast hits to 81884 proteins in 2869 species: Archae - 42; Bacteria - 7503; Metazoa - 36838; Fungi - 6259; Plants - 18395; Viruses - 323; Other Eukaryotes - 13648 (source: NCBI BLink).  protein_id AT2G17220.1p  transcript_id AT2G17220.1  protein_id AT2G17220.1p  transcript_id AT2G17220.1  
At2g17230	chr2:007494892	0.0	C/7494892-7495983	AT2G17230.1  CDS  gene_syn EXL5, EXORDIUM LIKE 5, T23A1.9, T23A1_9  gene EXL5  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product EXL5 (EXORDIUM LIKE 5)  note EXORDIUM LIKE 5 (EXL5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphate-induced protein 1 conserved region (InterPro:IPR006766); BEST Arabidopsis thaliana protein match is: EXL1 (EXORDIUM LIKE 1) (TAIR:AT2G35150.1); Has 231 Blast hits to 231 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 229; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G17230.1p  transcript_id AT2G17230.1  protein_id AT2G17230.1p  transcript_id AT2G17230.1  
At2g17240	chr2:007498178	0.0	W/7498178-7498411,7498808-7498996	AT2G17240.1  CDS  gene_syn T23A1.10, T23A1_10  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24506.1); Has 3052 Blast hits to 987 proteins in 134 species: Archae - 0; Bacteria - 363; Metazoa - 1137; Fungi - 63; Plants - 119; Viruses - 54; Other Eukaryotes - 1316 (source: NCBI BLink).  protein_id AT2G17240.1p  transcript_id AT2G17240.1  protein_id AT2G17240.1p  transcript_id AT2G17240.1  
At2g17250	chr2:007499573	0.0	W/7499573-7499929,7500019-7500111,7500189-7500262,7500354-7500412,7500496-7500547,7500686-7500786,7500867-7500928,7501046-7501147,7501235-7501293,7501382-7501556,7501643-7501813,7501944-7502085,7502452-7502509,7502598-7502703,7502835-7502957	AT2G17250.1  CDS  gene_syn EMB2762, EMBRYO DEFECTIVE 2762, T23A1.11, T23A1_11  gene EMB2762  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product EMB2762 (EMBRYO DEFECTIVE 2762)  note EMBRYO DEFECTIVE 2762 (EMB2762); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCAAT-binding factor (InterPro:IPR005612); Has 421 Blast hits to 419 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 152; Fungi - 173; Plants - 32; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT2G17250.1p  transcript_id AT2G17250.1  protein_id AT2G17250.1p  transcript_id AT2G17250.1  
At2g17260	chr2:007504780	0.0	W/7504780-7504865,7505146-7505408,7505502-7507128,7507216-7507247,7507329-7507723,7507814-7508266	AT2G17260.1  CDS  gene_syn ATGLR2, ATGLR3.1, F5J6.2, F5J6_2, GLR2, GLR3.1, GLUTAMATE RECEPTOR 2  gene GLR2  function Encodes a glutamate receptor. Involved in calcium-programmed stomatal closure.  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process cellular calcium ion homeostasis|GO:0006874|11379626|NAS  go_process response to light stimulus|GO:0009416|9823891|IMP  go_process stomatal movement|GO:0010118|19143998|IMP  go_function intracellular ligand-gated ion channel activity|GO:0005217||ISS  product GLR2 (GLUTAMATE RECEPTOR 2); intracellular ligand-gated ion channel  note GLUTAMATE RECEPTOR 2 (GLR2); FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus, stomatal movement; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Ionotropic glutamate receptor (InterPro:IPR001320), Glutamate receptor-related (InterPro:IPR015683), Extracellular ligand-binding receptor (InterPro:IPR001828), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: GLUR2 (GLUTAMATE RECEPTOR 2); intracellular ligand-gated ion channel (TAIR:AT4G35290.2); Has 4905 Blast hits to 4802 proteins in 367 species: Archae - 19; Bacteria - 580; Metazoa - 3845; Fungi - 0; Plants - 310; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).  protein_id AT2G17260.1p  transcript_id AT2G17260.1  protein_id AT2G17260.1p  transcript_id AT2G17260.1  
At2g17265	chr2:007508606	0.0	W/7508606-7509718	AT2G17265.1  CDS  gene_syn F5J6.24, F5J6_24, HOMOSERINE KINASE, HSK  gene HSK  function Encodes a homoserine kinase (HSK) which produces O-phospho-L-homoserine (HserP), a compound at the branching point of methionine and threonine biosynthesis. HSK is found in the stromal fraction of chloroplasts.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|15703056|IDA  go_process methionine biosynthetic process|GO:0009086|15703056|TAS  go_process threonine biosynthetic process|GO:0009088|15703056|TAS  go_function homoserine kinase activity|GO:0004413|15703056|IDA  go_function homoserine kinase activity|GO:0004413||ISS  product HSK (HOMOSERINE KINASE); homoserine kinase  note HOMOSERINE KINASE (HSK); FUNCTIONS IN: homoserine kinase activity; INVOLVED IN: threonine biosynthetic process, methionine biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GHMP kinase, ATP-binding, conserved site (InterPro:IPR006203), GHMP kinase (InterPro:IPR006204), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721), Homoserine kinase (InterPro:IPR000870), GHMP kinase, C-terminal (InterPro:IPR013750); BEST Arabidopsis thaliana protein match is: homoserine kinase, putative / HSK, putative (TAIR:AT4G35295.1); Has 3604 Blast hits to 3603 proteins in 1015 species: Archae - 219; Bacteria - 2538; Metazoa - 4; Fungi - 86; Plants - 25; Viruses - 0; Other Eukaryotes - 732 (source: NCBI BLink).  protein_id AT2G17265.1p  transcript_id AT2G17265.1  protein_id AT2G17265.1p  transcript_id AT2G17265.1  
At2g17270	chr2:007510456	0.0	W/7510456-7510596,7510792-7511141,7511223-7511266,7511519-7511733,7511839-7511963,7512064-7512118	AT2G17270.1  CDS  gene_syn F5J6.3, F5J6_3  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_function binding|GO:0005488||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: binding; INVOLVED IN: transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: mitochondrial phosphate transporter (TAIR:AT5G14040.1); Has 10187 Blast hits to 7354 proteins in 287 species: Archae - 0; Bacteria - 0; Metazoa - 5561; Fungi - 2331; Plants - 1440; Viruses - 0; Other Eukaryotes - 855 (source: NCBI BLink).  protein_id AT2G17270.1p  transcript_id AT2G17270.1  protein_id AT2G17270.1p  transcript_id AT2G17270.1  
At2g17280	chr2:007513274	0.0	W/7513274-7513330,7513427-7513534,7513628-7513707,7513841-7514003,7514081-7514155,7514240-7514328,7514420-7514539,7514634-7514678,7514766-7514844	AT2G17280.1  CDS  gene_syn F5J6.4, F5J6_4  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function catalytic activity|GO:0003824||ISS  product phosphoglycerate/bisphosphoglycerate mutase family protein  note phosphoglycerate/bisphosphoglycerate mutase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64460.6); Has 378 Blast hits to 375 proteins in 79 species: Archae - 0; Bacteria - 21; Metazoa - 0; Fungi - 204; Plants - 73; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT2G17280.1p  transcript_id AT2G17280.1  protein_id AT2G17280.1p  transcript_id AT2G17280.1  
At2g17280	chr2:007513274	0.0	W/7513274-7513330,7513427-7513534,7513628-7513707,7513841-7514003,7514081-7514155,7514240-7514328,7514420-7514539,7514634-7514678,7514766-7514844	AT2G17280.2  CDS  gene_syn F5J6.4, F5J6_4  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function catalytic activity|GO:0003824||ISS  product phosphoglycerate/bisphosphoglycerate mutase family protein  note phosphoglycerate/bisphosphoglycerate mutase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64460.6); Has 378 Blast hits to 375 proteins in 79 species: Archae - 0; Bacteria - 21; Metazoa - 0; Fungi - 204; Plants - 73; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT2G17280.2p  transcript_id AT2G17280.2  protein_id AT2G17280.2p  transcript_id AT2G17280.2  
At2g17290	chr2:007517005	0.0	W/7517005-7517722,7517879-7518022,7518115-7518267,7518360-7518475,7518568-7518735,7518822-7519046,7519129-7519239	AT2G17290.1  CDS  gene_syn ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, ATCDPK3, CALCIUM-DEPENDENT PROTEIN KINASE 6, CALMODULIN-DOMAIN PROTEIN KINASE 3, CPK6, Calcium dependent protein kinase 6, F5J6.13, F5J6_13  gene CPK6  function Encodes calcium dependent protein kinase 6 (CPK6), a member of the Arabidopsis CDPK gene family. CDPKs contain an intrinsic Ca2+-activation domain with four EF hand Ca2+-binding sites. CDPKs protein kinases have been proposed to function in multiple plant signal transduction pathways downstream of [Ca2+]cyt elevations, thus transducing various physiological responses. CPK6 is expressed in both guard cells and mesophyll cells. Functions in guard cell ion channel regulation. ABA and Ca(2+) activation of slow-type anion channels and, interestingly, ABA activation of plasma membrane Ca(2+)-permeable channels were impaired in independent alleles of single and double cpk3cpk6 mutant guard cells. Furthermore, ABA- and Ca(2+)-induced stomatal closing were partially impaired in these cpk3cpk6 mutant alleles. CPK3 is also a member of the Arabidopsis CDPK family.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_component membrane|GO:0016020|12068094|TAS  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process abscisic acid mediated signaling|GO:0009738|17032064|IMP  go_process regulation of stomatal movement|GO:0010119|17032064|IMP  go_process regulation of anion channel activity|GO:0010359|17032064|IMP  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  go_function kinase activity|GO:0016301||ISS  product CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6); ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase  note CALCIUM-DEPENDENT PROTEIN KINASE 6 (CPK6); FUNCTIONS IN: in 6 functions; INVOLVED IN: regulation of anion channel activity, abscisic acid mediated signaling, protein amino acid phosphorylation, N-terminal protein myristoylation, regulation of stomatal movement; LOCATED IN: cytosol, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CPK5 (calmodulin-domain protein kinase 5); ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT4G35310.1); Has 99087 Blast hits to 92879 proteins in 2692 species: Archae - 60; Bacteria - 7511; Metazoa - 42207; Fungi - 12257; Plants - 17585; Viruses - 433; Other Eukaryotes - 19034 (source: NCBI BLink).  protein_id AT2G17290.1p  transcript_id AT2G17290.1  protein_id AT2G17290.1p  transcript_id AT2G17290.1  
At2g17295	chr2:007520942	0.0	W/7520942-7521021	AT2G17295.1  snoRNA  gene_syn 50824.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT2G17295.1  
At2g17300	chr2:007522465	0.0	C/7522465-7522884	AT2G17300.1  CDS  gene_syn F5J6.6, F5J6_6  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35320.1); Has 25 Blast hits to 25 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G17300.1p  transcript_id AT2G17300.1  protein_id AT2G17300.1p  transcript_id AT2G17300.1  
At2g17305	chr2:007527676	0.0	W/7527676-7528017,7528245-7528418,7528554-7528853	AT2G17305.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G54820.1); Has 41 Blast hits to 26 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G17305.1p  transcript_id AT2G17305.1  protein_id AT2G17305.1p  transcript_id AT2G17305.1  
At2g17310	chr2:007531212	0.0	W/7531212-7532324	AT2G17310.1  CDS  gene_syn F5J6.7, F5J6_7, SON1, SUPPRESSOR OF NIM1-1 1  gene SON1  function Encodes an F-Box protein that regulates a novel induced defense response independent of both salicylic acid and systemic acquired resistance  go_component SCF ubiquitin ligase complex|GO:0019005|12119368|ISS  go_process response to bacterium|GO:0009617|12119368|IMP  go_process response to fungus|GO:0009620|12119368|IMP  go_process protein ubiquitination|GO:0016567|12119368|ISS  go_function molecular_function|GO:0003674||ND  product SON1 (SUPPRESSOR OF NIM1-1 1)  note SUPPRESSOR OF NIM1-1 1 (SON1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to fungus, response to bacterium, protein ubiquitination; LOCATED IN: SCF ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G17710.1); Has 741 Blast hits to 727 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 741; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G17310.1p  transcript_id AT2G17310.1  protein_id AT2G17310.1p  transcript_id AT2G17310.1  
At2g17320	chr2:007535725	0.0	C/7535725-7535876,7535347-7535412,7535130-7535196,7534982-7535050,7534740-7534880,7534504-7534632,7534332-7534418,7534159-7534233,7534006-7534083,7533837-7533914,7533688-7533750,7533537-7533617	AT2G17320.1  CDS  gene_syn F5J6.8, F5J6_8  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product pantothenate kinase-related  note pantothenate kinase-related; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF89 (InterPro:IPR002791), Uncharacterised conserved protein UCP030210 (InterPro:IPR016949); BEST Arabidopsis thaliana protein match is: pantothenate kinase-related (TAIR:AT2G17340.1); Has 206 Blast hits to 206 proteins in 74 species: Archae - 31; Bacteria - 16; Metazoa - 87; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G17320.1p  transcript_id AT2G17320.1  protein_id AT2G17320.1p  transcript_id AT2G17320.1  
At2g17330	chr2:007537337	0.0	C/7537337-7539422	AT2G17330.1  pseudogenic_transcript  pseudo  gene_syn CYP51A1, CYP51G2, CYTOCHROME P450 51G2, CYTOCHROME P450 51A1, F5J6.9, F5J6_9  gene CYP51G2  function putative obtusifoliol 14-alpha demethylase. Expressed pseudogene.  note pseudogene, obtusifoliol 14-alpha demethylase, putative, similar to obtusifoliol 14-alpha demethylase GI:14624983 from (Arabidopsis thaliana); blastp match of 72% identity and 1.9e-177 P-value to GP|27461067|gb|AAL40888.1||AY065641 obtusifoliol-14-demethylase {Nicotiana tabacum}  
At2g17340	chr2:007543920	0.0	C/7543920-7544089,7543501-7543566,7543258-7543324,7543108-7543176,7542880-7543020,7542668-7542796,7542481-7542567,7542309-7542383,7542152-7542229,7541976-7542053,7541821-7541883,7541615-7541695	AT2G17340.1  CDS  gene_syn F5J6.10, F5J6_10  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product pantothenate kinase-related  note pantothenate kinase-related; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF89 (InterPro:IPR002791), Uncharacterised conserved protein UCP030210 (InterPro:IPR016949); BEST Arabidopsis thaliana protein match is: pantothenate kinase family protein (TAIR:AT4G35360.1); Has 221 Blast hits to 221 proteins in 82 species: Archae - 33; Bacteria - 28; Metazoa - 87; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT2G17340.1p  transcript_id AT2G17340.1  protein_id AT2G17340.1p  transcript_id AT2G17340.1  
At2g17350	chr2:007545969	0.0	C/7545969-7546148,7545703-7545876	AT2G17350.1  CDS  gene_syn F5J6.11, F5J6_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 93 Blast hits to 67 proteins in 31 species: Archae - 0; Bacteria - 1; Metazoa - 16; Fungi - 13; Plants - 21; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT2G17350.1p  transcript_id AT2G17350.1  protein_id AT2G17350.1p  transcript_id AT2G17350.1  
At2g17360	chr2:007546598	0.0	W/7546598-7546600,7546994-7547071,7547155-7547335,7547451-7547548,7547713-7548138	AT2G17360.1  CDS  gene_syn F5J6.12, F5J6_12  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S4 (RPS4A)  note 40S ribosomal protein S4 (RPS4A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, plasma membrane, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S4e, central (InterPro:IPR013845), Ribosomal protein S4e, N-terminal, conserved site (InterPro:IPR018199), KOW (InterPro:IPR005824), RNA-binding S4 (InterPro:IPR002942), Ribosomal protein S4e, N-terminal (InterPro:IPR013843), Ribosomal protein S4e (InterPro:IPR000876); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S4 (RPS4B) (TAIR:AT5G07090.1); Has 942 Blast hits to 942 proteins in 319 species: Archae - 166; Bacteria - 0; Metazoa - 329; Fungi - 122; Plants - 101; Viruses - 0; Other Eukaryotes - 224 (source: NCBI BLink).  protein_id AT2G17360.1p  transcript_id AT2G17360.1  protein_id AT2G17360.1p  transcript_id AT2G17360.1  
At2g17370	chr2:007550007	0.0	W/7550007-7550920,7550999-7551180,7551269-7551609,7551730-7551981	AT2G17370.1  CDS  gene_syn 3-HYDROXY-3-METHYLGLUTARYL-COA REDUCTASE 2, 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 2, F5J6.1, F5J6_1, HMG2, HMGR2  gene HMG2  function Encodes a 3-hydroxy-3-methylglutaryl-CoA reductase (HMGR) that is involved in the synthesis of sterol and triterpenoid compounds.  go_component microsome|GO:0005792|8302869|IDA  go_process isoprenoid biosynthetic process|GO:0008299|7780305|TAS  go_process triterpenoid biosynthetic process|GO:0016104|17917299|IMP  go_process sterol biosynthetic process|GO:0016126|17917299|IMP  go_function hydroxymethylglutaryl-CoA reductase activity|GO:0042282|7780305|ISS  product HMG2 (3-HYDROXY-3-METHYLGLUTARYL-COA REDUCTASE 2); hydroxymethylglutaryl-CoA reductase  note 3-HYDROXY-3-METHYLGLUTARYL-COA REDUCTASE 2 (HMG2); FUNCTIONS IN: hydroxymethylglutaryl-CoA reductase activity; INVOLVED IN: triterpenoid biosynthetic process, isoprenoid biosynthetic process, sterol biosynthetic process; LOCATED IN: microsome; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Hydroxymethylglutaryl-CoA reductase, class I, catalytic (InterPro:IPR004554), Hydroxymethylglutaryl-CoA reductase, class I/II, substrate-binding (InterPro:IPR009029), Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding (InterPro:IPR009023), Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic (InterPro:IPR002202); BEST Arabidopsis thaliana protein match is: HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1); hydroxymethylglutaryl-CoA reductase (TAIR:AT1G76490.1); Has 1373 Blast hits to 1373 proteins in 532 species: Archae - 129; Bacteria - 440; Metazoa - 201; Fungi - 155; Plants - 209; Viruses - 1; Other Eukaryotes - 238 (source: NCBI BLink).  protein_id AT2G17370.1p  transcript_id AT2G17370.1  protein_id AT2G17370.1p  transcript_id AT2G17370.1  
At2g17380	chr2:007553122	0.0	W/7553122-7553124,7553955-7554041,7554131-7554222,7554308-7554416,7554516-7554551,7554640-7554726,7554816-7554887	AT2G17380.1  CDS  gene_syn AP19, ASSOCIATED PROTEIN 19, CLATHRIN ASSEMBLY PROTEIN AP19, F5J6.14, F5J6_14  gene AP19  function Encodes clathrin assembly protein AP19.  go_component mitochondrion|GO:0005739||IEA  go_component membrane coat|GO:0030117||IEA  go_component clathrin coat of trans-Golgi network vesicle|GO:0030130||IEA  go_component clathrin adaptor complex|GO:0030131||IEA  go_process transport|GO:0006810||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process protein transport|GO:0015031||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function protein binding|GO:0005515||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component clathrin vesicle coat|GO:0030125||ISS  go_process intracellular protein transport|GO:0006886||ISS  product AP19; protein binding / protein transporter  note AP19; FUNCTIONS IN: protein transporter activity, protein binding; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport, protein transport; LOCATED IN: membrane coat, mitochondrion, clathrin vesicle coat, clathrin coat of trans-Golgi network vesicle, clathrin adaptor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor AP1, sigma subunit (InterPro:IPR015604), Adaptor protein complex, sigma subunit (InterPro:IPR016635), Clathrin adaptor, sigma subunit/coatomer, zeta subunit (InterPro:IPR000804), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: clathrin adaptor complex small chain family protein (TAIR:AT4G35410.2); Has 1350 Blast hits to 1349 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 623; Fungi - 317; Plants - 130; Viruses - 0; Other Eukaryotes - 280 (source: NCBI BLink).  protein_id AT2G17380.1p  transcript_id AT2G17380.1  protein_id AT2G17380.1p  transcript_id AT2G17380.1  
At2g17390	chr2:007555870	0.0	W/7555870-7555909,7555994-7556136,7556220-7556432,7556530-7556678,7556754-7556910,7557036-7557128,7557406-7557545,7557644-7557743	AT2G17390.1  CDS  gene_syn AKR2B, ANKYRIN REPEAT-CONTAINING 2B, F5J6.15, F5J6_15  gene AKR2B  function Highly homologous to AKR2A. Involved in chloroplast biogenesis. Double mutants of AKR2A and AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.  go_component plasma membrane|GO:0005886|17317660|IDA  go_function protein binding|GO:0005515||ISS  go_function transcription regulator activity|GO:0030528|12218065|TAS  product AKR2B (ANKYRIN REPEAT-CONTAINING 2B); protein binding / transcription regulator  note ANKYRIN REPEAT-CONTAINING 2B (AKR2B); FUNCTIONS IN: protein binding, transcription regulator activity; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2); protein binding (TAIR:AT4G35450.3); Has 67913 Blast hits to 22154 proteins in 861 species: Archae - 95; Bacteria - 3932; Metazoa - 37252; Fungi - 3585; Plants - 1938; Viruses - 778; Other Eukaryotes - 20333 (source: NCBI BLink).  protein_id AT2G17390.1p  transcript_id AT2G17390.1  protein_id AT2G17390.1p  transcript_id AT2G17390.1  
At2g17410	chr2:007559869	0.0	W/7559869-7561454,7561551-7561590,7561774-7561826,7561930-7561975,7562188-7562280,7562387-7562494,7562617-7562671,7562763-7562829,7562913-7562979,7563065-7563115,7563202-7563294,7563373-7563474	AT2G17410.1  CDS  gene_syn AT2G17400, F5J6.17, F5J6_17  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ARID/BRIGHT DNA-binding domain-containing protein  note ARID/BRIGHT DNA-binding domain-containing protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978), AT-rich interaction region (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: ARID/BRIGHT DNA-binding domain-containing protein (TAIR:AT1G76510.2); Has 4562 Blast hits to 3323 proteins in 373 species: Archae - 17; Bacteria - 590; Metazoa - 1793; Fungi - 581; Plants - 192; Viruses - 45; Other Eukaryotes - 1344 (source: NCBI BLink).  protein_id AT2G17410.1p  transcript_id AT2G17410.1  protein_id AT2G17410.1p  transcript_id AT2G17410.1  
At2g17420	chr2:007564357	0.0	W/7564357-7565422,7566149-7566219	AT2G17420.1  CDS  gene_syn ATNTRA, F5J6.18, F5J6_18, NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-DEPENDENT THIOREDOXIN REDUCTASE A, NTR2, NTRA, THIOREDOXIN REDUCTASE A  gene NTRA  function NADPH-dependent thioredoxin reductase, major cytosolic isoform  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component mitochondrial matrix|GO:0005759|11717467|IDA  go_component cytosol|GO:0005829|15642341|IDA  go_process pollen germination|GO:0009846|17586656|IGI  go_process cell growth|GO:0016049|17586656|IGI  go_process thioredoxin biosynthetic process|GO:0042964|17586656|IGI  go_process cell redox homeostasis|GO:0045454|17586656|IGI  go_process seed development|GO:0048316|17586656|IGI  go_function thioredoxin-disulfide reductase activity|GO:0004791|11717467|IDA  product NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A); thioredoxin-disulfide reductase  note NADPH-DEPENDENT THIOREDOXIN REDUCTASE A (NTRA); FUNCTIONS IN: thioredoxin-disulfide reductase activity; INVOLVED IN: in 6 processes; LOCATED IN: cytosol, mitochondrial matrix; EXPRESSED IN: male gametophyte, guard cell, cultured cell, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, class-II, active site (InterPro:IPR008255), Adrenodoxin reductase (InterPro:IPR000759), Thioredoxin reductase (InterPro:IPR005982); BEST Arabidopsis thaliana protein match is: NTRB (NADPH-DEPENDENT THIOREDOXIN REDUCTASE B); thioredoxin-disulfide reductase (TAIR:AT4G35460.1); Has 12827 Blast hits to 12825 proteins in 1590 species: Archae - 322; Bacteria - 6761; Metazoa - 113; Fungi - 190; Plants - 89; Viruses - 0; Other Eukaryotes - 5352 (source: NCBI BLink).  protein_id AT2G17420.1p  transcript_id AT2G17420.1  protein_id AT2G17420.1p  transcript_id AT2G17420.1  
At2g17430	chr2:007568018	0.0	W/7568018-7568209,7568300-7568357,7568431-7568747,7568828-7568888,7568972-7569060,7569148-7569222,7569308-7569396,7569491-7569540,7569609-7569649,7569718-7569891,7570015-7570050,7570126-7570193,7570281-7570341,7570441-7570758	AT2G17430.1  CDS  gene_syn ATMLO7, F5J6.19, F5J6_19, MILDEW RESISTANCE LOCUS O 7, MLO7  gene MLO7  function A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO7 belongs to the clade III, with AtMLO5, AtMLO8, AtMLO9, and AtMLO10. The gene is expressed in vegetative organs (RT-PCR experiments)and in pollen grains, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).  go_component integral to membrane|GO:0016021||IEA  go_process cell death|GO:0008219||IEA  go_component plasma membrane|GO:0005886||ISS  go_process defense response|GO:0006952||ISS  go_process cell death|GO:0008219||ISS  go_function calmodulin binding|GO:0005516||ISS  product MLO7 (MILDEW RESISTANCE LOCUS O 7); calmodulin binding  note MILDEW RESISTANCE LOCUS O 7 (MLO7); FUNCTIONS IN: calmodulin binding; INVOLVED IN: cell death, defense response; LOCATED IN: integral to membrane, plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: seedling growth, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326); BEST Arabidopsis thaliana protein match is: MLO10 (MILDEW RESISTANCE LOCUS O 10); calmodulin binding (TAIR:AT5G65970.1); Has 296 Blast hits to 291 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 292; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G17430.1p  transcript_id AT2G17430.1  protein_id AT2G17430.1p  transcript_id AT2G17430.1  
At2g17440	chr2:007571331	0.0	W/7571331-7571877,7572257-7573170,7573287-7573406	AT2G17440.1  CDS  gene_syn F5J6.20, F5J6_20  go_component plasma membrane|GO:0005886|17644812|IDA  go_function protein binding|GO:0005515||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT4G35470.1); Has 71100 Blast hits to 27006 proteins in 960 species: Archae - 22; Bacteria - 6679; Metazoa - 32210; Fungi - 2305; Plants - 25119; Viruses - 28; Other Eukaryotes - 4737 (source: NCBI BLink).  protein_id AT2G17440.1p  transcript_id AT2G17440.1  protein_id AT2G17440.1p  transcript_id AT2G17440.1  
At2g17442	chr2:007575150	0.0	C/7575150-7575152,7574964-7575024,7574826-7574875,7574722-7574751,7574565-7574627,7574410-7574472,7574238-7574303,7574060-7574134	AT2G17442.3  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G17442.3p  transcript_id AT2G17442.3  protein_id AT2G17442.3p  transcript_id AT2G17442.3  
At2g17442	chr2:007575150	0.0	C/7575150-7575152,7574964-7575024,7574826-7574875,7574722-7574751,7574565-7574627,7574410-7574472,7574238-7574303,7574060-7574134	AT2G17442.4  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G17442.4p  transcript_id AT2G17442.4  protein_id AT2G17442.4p  transcript_id AT2G17442.4  
At2g17442	chr2:007575150	0.0	C/7575150-7575152,7574964-7575027,7574722-7574780,7574565-7574627,7574410-7574472,7574238-7574303,7574060-7574134	AT2G17442.5  CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G17442.5p  transcript_id AT2G17442.5  protein_id AT2G17442.5p  transcript_id AT2G17442.5  
At2g17442	chr2:007575150	0.0	C/7575150-7575152,7574964-7575027,7574826-7574875,7574722-7574751,7574565-7574627,7574410-7574472,7574238-7574303,7574060-7574134	AT2G17442.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G17442.1p  transcript_id AT2G17442.1  protein_id AT2G17442.1p  transcript_id AT2G17442.1  
At2g17442	chr2:007575150	0.0	C/7575150-7575152,7574964-7575027,7574826-7574875,7574722-7574751,7574565-7574627,7574410-7574472,7574238-7574303,7574060-7574134	AT2G17442.2  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G17442.2p  transcript_id AT2G17442.2  protein_id AT2G17442.2p  transcript_id AT2G17442.2  
At2g17450	chr2:007576640	0.0	C/7576640-7577197	AT2G17450.1  CDS  gene_syn F5J6.22, RHA3A, RING-H2 FINGER A3A, RING-H2 FINGER PROTEIN RHA3A  gene RHA3A  function Encodes a putative RING-H2 finger protein RHA3a.  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product RHA3A; protein binding / zinc ion binding  note RHA3A; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: RHA3B; protein binding / zinc ion binding (TAIR:AT4G35480.1); Has 6618 Blast hits to 6598 proteins in 216 species: Archae - 0; Bacteria - 0; Metazoa - 2199; Fungi - 498; Plants - 2802; Viruses - 38; Other Eukaryotes - 1081 (source: NCBI BLink).  protein_id AT2G17450.1p  transcript_id AT2G17450.1  protein_id AT2G17450.1p  transcript_id AT2G17450.1  
At2g17460	chr2:007582174	0.0	W/7582174-7583230	AT2G17460.1  mRNA_TE_gene  pseudo  gene_syn F5J6.25  note Transposable element gene, Mutator-like transposase family, has a 5.5e-22 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g17470	chr2:007587753	0.0	C/7587753-7588008,7586607-7586744,7586251-7586520,7585750-7585886,7585521-7585667,7584572-7585240	AT2G17470.1  CDS  gene_syn F5J6.5  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0005 (InterPro:IPR006214); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25480.1); Has 583 Blast hits to 582 proteins in 205 species: Archae - 0; Bacteria - 346; Metazoa - 0; Fungi - 18; Plants - 199; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT2G17470.1p  transcript_id AT2G17470.1  protein_id AT2G17470.1p  transcript_id AT2G17470.1  
At2g17477	chr2:007589808	0.0	W/7589808-7590264	AT2G17477.1  pseudogenic_transcript  pseudo  function Pseudogene of AT3G22350; F-box family protein  
At2g17480	chr2:007593553	0.0	C/7593553-7593768,7593302-7593359,7592969-7593192,7592755-7592871,7592607-7592667,7592382-7592470,7592168-7592242,7591994-7592082,7591872-7591921,7591763-7591803,7591489-7591662,7591360-7591395,7591201-7591268,7591064-7591124,7590559-7590981	AT2G17480.1  CDS  gene_syn ATMLO8, F5J6.21, MILDEW RESISTANCE LOCUS O 8, MLO8  gene MLO8  function A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO8 belongs to the clade III, with AtMLO5, AtMLO7, AtMLO9, and AtMLO10. The gene is expressed during seedling growth, in cotyledons and hypocotyl, and in fruit abscission zone, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process cell death|GO:0008219||IEA  go_component plasma membrane|GO:0005886||ISS  go_process defense response|GO:0006952||ISS  go_process cell death|GO:0008219||ISS  go_function calmodulin binding|GO:0005516||ISS  product MLO8 (MILDEW RESISTANCE LOCUS O 8); calmodulin binding  note MILDEW RESISTANCE LOCUS O 8 (MLO8); FUNCTIONS IN: calmodulin binding; INVOLVED IN: cell death, defense response; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326); BEST Arabidopsis thaliana protein match is: MLO10 (MILDEW RESISTANCE LOCUS O 10); calmodulin binding (TAIR:AT5G65970.1); Has 295 Blast hits to 290 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 291; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G17480.1p  transcript_id AT2G17480.1  protein_id AT2G17480.1p  transcript_id AT2G17480.1  
At2g17490	chr2:007598985	0.0	C/7598985-7602121	AT2G17490.1  mRNA_TE_gene  pseudo  gene_syn MJB20.5, MJB20_5  note Transposable element gene, copia-like retrotransposon family, has a 9.3e-199 P-value blast match to gb|AAO73521.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At2g17500	chr2:007607063	0.0	W/7607063-7607197,7607315-7607394,7607487-7607611,7607723-7607844,7607936-7608199,7608282-7608382,7608459-7608511,7608599-7608784,7608866-7608990	AT2G17500.1  CDS  gene_syn MJB20.6, MJB20_6  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process auxin polar transport|GO:0009926||ISS  go_function auxin:hydrogen symporter activity|GO:0009672||ISS  product auxin efflux carrier family protein  note auxin efflux carrier family protein; FUNCTIONS IN: auxin:hydrogen symporter activity; INVOLVED IN: auxin polar transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: auxin efflux carrier family protein (TAIR:AT5G65980.1); Has 400 Blast hits to 390 proteins in 87 species: Archae - 2; Bacteria - 24; Metazoa - 0; Fungi - 152; Plants - 180; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT2G17500.1p  transcript_id AT2G17500.1  protein_id AT2G17500.1p  transcript_id AT2G17500.1  
At2g17500	chr2:007607063	0.0	W/7607063-7607197,7607315-7607394,7607487-7607611,7607723-7607844,7607936-7608199,7608282-7608382,7608459-7608511,7608599-7608784,7608866-7608990	AT2G17500.2  CDS  gene_syn MJB20.6, MJB20_6  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process auxin polar transport|GO:0009926||ISS  go_function auxin:hydrogen symporter activity|GO:0009672||ISS  product auxin efflux carrier family protein  note auxin efflux carrier family protein; FUNCTIONS IN: auxin:hydrogen symporter activity; INVOLVED IN: auxin polar transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: auxin efflux carrier family protein (TAIR:AT5G65980.1); Has 400 Blast hits to 390 proteins in 87 species: Archae - 2; Bacteria - 24; Metazoa - 0; Fungi - 152; Plants - 180; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT2G17500.2p  transcript_id AT2G17500.2  protein_id AT2G17500.2p  transcript_id AT2G17500.2  
At2g17500	chr2:007607063	0.0	W/7607063-7607197,7607315-7607394,7607487-7607611,7607723-7607844,7607936-7608199,7608282-7608382,7608459-7608511,7608599-7608784,7608866-7608990	AT2G17500.3  CDS  gene_syn MJB20.6, MJB20_6  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process auxin polar transport|GO:0009926||ISS  go_function auxin:hydrogen symporter activity|GO:0009672||ISS  product auxin efflux carrier family protein  note auxin efflux carrier family protein; FUNCTIONS IN: auxin:hydrogen symporter activity; INVOLVED IN: auxin polar transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: auxin efflux carrier family protein (TAIR:AT5G65980.1); Has 400 Blast hits to 390 proteins in 87 species: Archae - 2; Bacteria - 24; Metazoa - 0; Fungi - 152; Plants - 180; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT2G17500.3p  transcript_id AT2G17500.3  protein_id AT2G17500.3p  transcript_id AT2G17500.3  
At2g17500	chr2:007607063	0.0	W/7607063-7607197,7607315-7607394,7607487-7607611,7607723-7607844,7607936-7608199,7608282-7608382,7608459-7608511,7608599-7608784,7608866-7608990	AT2G17500.4  CDS  gene_syn MJB20.6, MJB20_6  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process auxin polar transport|GO:0009926||ISS  go_function auxin:hydrogen symporter activity|GO:0009672||ISS  product auxin efflux carrier family protein  note auxin efflux carrier family protein; FUNCTIONS IN: auxin:hydrogen symporter activity; INVOLVED IN: auxin polar transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: auxin efflux carrier family protein (TAIR:AT5G65980.1); Has 400 Blast hits to 390 proteins in 87 species: Archae - 2; Bacteria - 24; Metazoa - 0; Fungi - 152; Plants - 180; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT2G17500.4p  transcript_id AT2G17500.4  protein_id AT2G17500.4p  transcript_id AT2G17500.4  
At2g17510	chr2:007615828	0.0	C/7615828-7615881,7615605-7615736,7615361-7615518,7615102-7615157,7614855-7614977,7614611-7614741,7614266-7614506,7614012-7614168,7613492-7613732,7613185-7613341,7612998-7613066,7612562-7612687,7612432-7612484,7612239-7612345,7611921-7611975,7611726-7611825,7611447-7611558,7610938-7611058,7610697-7610756,7610500-7610605,7610329-7610424,7609977-7610058,7609820-7609885,7609395-7609593	AT2G17510.1  CDS  gene_syn EMB2763, EMBRYO DEFECTIVE 2763, MJB20.7, MJB20_7  gene EMB2763  go_function RNA binding|GO:0003723||IEA  go_function ribonuclease activity|GO:0004540||IEA  go_function RNA binding|GO:0003723||ISS  go_function ribonuclease activity|GO:0004540||ISS  product EMB2763 (EMBRYO DEFECTIVE 2763); RNA binding / ribonuclease  note EMBRYO DEFECTIVE 2763 (EMB2763); FUNCTIONS IN: ribonuclease activity, RNA binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide binding protein, PINc (InterPro:IPR006596), Ribonuclease II and R (InterPro:IPR001900); BEST Arabidopsis thaliana protein match is: ribonuclease II family protein (TAIR:AT1G77680.1); Has 5395 Blast hits to 5320 proteins in 1284 species: Archae - 25; Bacteria - 2941; Metazoa - 370; Fungi - 272; Plants - 61; Viruses - 2; Other Eukaryotes - 1724 (source: NCBI BLink).  protein_id AT2G17510.1p  transcript_id AT2G17510.1  protein_id AT2G17510.1p  transcript_id AT2G17510.1  
At2g17520	chr2:007617504	0.0	W/7617504-7617658,7617870-7618113,7618194-7619449,7619649-7619821,7620068-7620314,7620393-7620696,7620783-7620929	AT2G17520.1  CDS  gene_syn ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-2, ATIRE1-2, INOSITOL REQUIRING 1-2, IRE1-2, IRE1A, MJB20.8, MJB20_8, TRANSMEMBRANE PROTEIN KINASE/RIBONUCLEASE  gene IRE1A  function Encodes a endoribonuclease/protein kinase IRE1-like protein that is predicted to form a type I transmembrane protein structure and contain kinase/endoribonuclease domains at their C-terminal halves. The transcript levels for several ER-stress responsive genes, including six protein disulfide isomerases (PDIs), BiP2, and AtbZIP60 are not affected in ire1-2 null mutants.  go_component extrinsic to endoplasmic reticulum membrane|GO:0042406|11706177|IDA  go_process activation of signaling protein activity involved in unfolded protein response|GO:0006987|11706177|IMP  go_function endoribonuclease activity|GO:0004521|11706177|IMP  go_function kinase activity|GO:0016301||ISS  product IRE1A; endoribonuclease/ kinase  note IRE1A; FUNCTIONS IN: endoribonuclease activity, kinase activity; INVOLVED IN: activation of signaling protein activity involved in unfolded protein response; LOCATED IN: extrinsic to endoplasmic reticulum membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Ribonuclease L (InterPro:IPR010513), PUG (InterPro:IPR006567), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: IRE1-1 (INOSITOL REQUIRING 1-1); ATP binding / endoribonuclease, producing 5 -phosphomonoesters / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G24360.1); Has 75624 Blast hits to 74953 proteins in 2854 species: Archae - 55; Bacteria - 6858; Metazoa - 32057; Fungi - 6895; Plants - 15539; Viruses - 305; Other Eukaryotes - 13915 (source: NCBI BLink).  protein_id AT2G17520.1p  transcript_id AT2G17520.1  protein_id AT2G17520.1p  transcript_id AT2G17520.1  
At2g17525	chr2:007624178	0.0	W/7624178-7626058	AT2G17525.1  CDS  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G74580.1); Has 18113 Blast hits to 5556 proteins in 157 species: Archae - 6; Bacteria - 10; Metazoa - 278; Fungi - 248; Plants - 16951; Viruses - 0; Other Eukaryotes - 620 (source: NCBI BLink).  protein_id AT2G17525.1p  transcript_id AT2G17525.1  protein_id AT2G17525.1p  transcript_id AT2G17525.1  
At2g17530	chr2:007626518	0.0	W/7626518-7626700,7627310-7628101,7628198-7628245,7628325-7628624	AT2G17530.1  CDS  gene_syn MJB20.9, MJB20_9  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G35500.1); Has 26763 Blast hits to 22425 proteins in 758 species: Archae - 2; Bacteria - 1135; Metazoa - 12294; Fungi - 4189; Plants - 3231; Viruses - 62; Other Eukaryotes - 5850 (source: NCBI BLink).  protein_id AT2G17530.1p  transcript_id AT2G17530.1  protein_id AT2G17530.1p  transcript_id AT2G17530.1  
At2g17530	chr2:007626518	0.0	W/7626518-7626700,7627310-7628101,7628198-7628245,7628338-7628379	AT2G17530.2  CDS  gene_syn MJB20.9, MJB20_9  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G35500.1); Has 24029 Blast hits to 20728 proteins in 731 species: Archae - 2; Bacteria - 1135; Metazoa - 11242; Fungi - 3829; Plants - 2607; Viruses - 24; Other Eukaryotes - 5190 (source: NCBI BLink).  protein_id AT2G17530.2p  transcript_id AT2G17530.2  protein_id AT2G17530.2p  transcript_id AT2G17530.2  
At2g17540	chr2:007630662	0.0	C/7630662-7631489	AT2G17540.1  CDS  gene_syn MJB20.10, MJB20_10  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35510.1); Has 25 Blast hits to 25 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G17540.1p  transcript_id AT2G17540.1  protein_id AT2G17540.1p  transcript_id AT2G17540.1  
At2g17540	chr2:007630662	0.0	C/7630662-7631489	AT2G17540.2  CDS  gene_syn MJB20.10, MJB20_10  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35510.1); Has 25 Blast hits to 25 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G17540.2p  transcript_id AT2G17540.2  protein_id AT2G17540.2p  transcript_id AT2G17540.2  
At2g17540	chr2:007630662	0.0	C/7630662-7631489	AT2G17540.3  CDS  gene_syn MJB20.10, MJB20_10  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35510.1); Has 25 Blast hits to 25 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G17540.3p  transcript_id AT2G17540.3  protein_id AT2G17540.3p  transcript_id AT2G17540.3  
At2g17550	chr2:007635481	0.0	C/7635481-7636770,7635233-7635401,7634495-7635153	AT2G17550.2  CDS  gene_syn MJB20.11, MJB20_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G02390.1); Has 148 Blast hits to 140 proteins in 41 species: Archae - 5; Bacteria - 0; Metazoa - 42; Fungi - 8; Plants - 43; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT2G17550.2p  transcript_id AT2G17550.2  protein_id AT2G17550.2p  transcript_id AT2G17550.2  
At2g17550	chr2:007637128	0.0	C/7637128-7637212,7636934-7637010,7635481-7636830,7635275-7635401,7634495-7635153	AT2G17550.1  CDS  gene_syn MJB20.11, MJB20_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G02390.1); Has 191 Blast hits to 189 proteins in 52 species: Archae - 3; Bacteria - 3; Metazoa - 53; Fungi - 18; Plants - 51; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT2G17550.1p  transcript_id AT2G17550.1  protein_id AT2G17550.1p  transcript_id AT2G17550.1  
At2g17556	chr2:007640673	0.0	C/7640673-7640771	AT2G17556.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G17556.1p  transcript_id AT2G17556.1  protein_id AT2G17556.1p  transcript_id AT2G17556.1  
At2g17560	chr2:007643422	0.0	C/7643422-7643468,7643250-7643339,7643101-7643158,7642954-7642998,7642770-7642850,7642600-7642674,7642486-7642506	AT2G17560.1  CDS  gene_syn HIGH MOBILITY GROUP B 4, HMGB4, MJB20.12, MJB20_12, NFD04, NFD4, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D4  gene HMGB4  function Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha.  go_component chromatin|GO:0000785|12653554|TAS  go_process chromatin assembly or disassembly|GO:0006333|12653554|TAS  go_function DNA binding|GO:0003677|9461286|IDA  go_function DNA binding|GO:0003677|9461286|ISS  go_function chromatin binding|GO:0003682|12653554|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function structural constituent of chromatin|GO:0030527|12653554|TAS  product HMGB4 (HIGH MOBILITY GROUP B 4); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor  note HIGH MOBILITY GROUP B 4 (HMGB4); FUNCTIONS IN: chromatin binding, transcription factor activity, structural constituent of chromatin, DNA binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: HMGB5 (HIGH MOBILITY GROUP B 5); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor (TAIR:AT4G35570.1); Has 3864 Blast hits to 3622 proteins in 469 species: Archae - 0; Bacteria - 0; Metazoa - 2971; Fungi - 232; Plants - 341; Viruses - 3; Other Eukaryotes - 317 (source: NCBI BLink).  protein_id AT2G17560.1p  transcript_id AT2G17560.1  protein_id AT2G17560.1p  transcript_id AT2G17560.1  
At2g17560	chr2:007643422	0.0	C/7643422-7643468,7643250-7643339,7643101-7643158,7642954-7642998,7642770-7642850,7642600-7642674,7642486-7642506	AT2G17560.2  CDS  gene_syn HIGH MOBILITY GROUP B 4, HMGB4, MJB20.12, MJB20_12, NFD04, NFD4, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D4  gene HMGB4  function Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha.  go_component chromatin|GO:0000785|12653554|TAS  go_process chromatin assembly or disassembly|GO:0006333|12653554|TAS  go_function DNA binding|GO:0003677|9461286|IDA  go_function DNA binding|GO:0003677|9461286|ISS  go_function chromatin binding|GO:0003682|12653554|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function structural constituent of chromatin|GO:0030527|12653554|TAS  product HMGB4 (HIGH MOBILITY GROUP B 4); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor  note HIGH MOBILITY GROUP B 4 (HMGB4); FUNCTIONS IN: chromatin binding, transcription factor activity, structural constituent of chromatin, DNA binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: HMGB5 (HIGH MOBILITY GROUP B 5); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor (TAIR:AT4G35570.1); Has 3864 Blast hits to 3622 proteins in 469 species: Archae - 0; Bacteria - 0; Metazoa - 2971; Fungi - 232; Plants - 341; Viruses - 3; Other Eukaryotes - 317 (source: NCBI BLink).  protein_id AT2G17560.2p  transcript_id AT2G17560.2  protein_id AT2G17560.2p  transcript_id AT2G17560.2  
At2g17560	chr2:007643422	0.0	C/7643422-7643468,7643250-7643339,7643101-7643158,7642954-7642998,7642770-7642850,7642612-7642674,7642486-7642506	AT2G17560.3  CDS  gene_syn HIGH MOBILITY GROUP B 4, HMGB4, MJB20.12, MJB20_12, NFD04, NFD4, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D4  gene HMGB4  function Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha.  go_component chromatin|GO:0000785|12653554|TAS  go_process chromatin assembly or disassembly|GO:0006333|12653554|TAS  go_function DNA binding|GO:0003677|9461286|IDA  go_function DNA binding|GO:0003677|9461286|ISS  go_function chromatin binding|GO:0003682|12653554|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function structural constituent of chromatin|GO:0030527|12653554|TAS  product HMGB4 (HIGH MOBILITY GROUP B 4); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor  note HIGH MOBILITY GROUP B 4 (HMGB4); FUNCTIONS IN: chromatin binding, transcription factor activity, structural constituent of chromatin, DNA binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: HMGB5 (HIGH MOBILITY GROUP B 5); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor (TAIR:AT4G35570.1); Has 3811 Blast hits to 3569 proteins in 468 species: Archae - 0; Bacteria - 0; Metazoa - 2927; Fungi - 227; Plants - 341; Viruses - 5; Other Eukaryotes - 311 (source: NCBI BLink).  protein_id AT2G17560.3p  transcript_id AT2G17560.3  protein_id AT2G17560.3p  transcript_id AT2G17560.3  
At2g17570	chr2:007645086	0.0	W/7645086-7645973	AT2G17570.1  CDS  gene_syn MJB20.13, MJB20_13  go_function transferase activity, transferring alkyl or aryl (other than methyl) groups|GO:0016765||IEA  product undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein  note undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein; FUNCTIONS IN: transferase activity, transferring alkyl or aryl (other than methyl) groups; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Di-trans-poly-cis-decaprenylcistransferase-like, conserved site (InterPro:IPR018520), Di-trans-poly-cis-decaprenylcistransferase-like (InterPro:IPR001441); BEST Arabidopsis thaliana protein match is: undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein (TAIR:AT5G60510.1); Has 6186 Blast hits to 6176 proteins in 1539 species: Archae - 148; Bacteria - 2789; Metazoa - 157; Fungi - 141; Plants - 121; Viruses - 0; Other Eukaryotes - 2830 (source: NCBI BLink).  protein_id AT2G17570.1p  transcript_id AT2G17570.1  protein_id AT2G17570.1p  transcript_id AT2G17570.1  
At2g17580	chr2:007646507	0.0	W/7646507-7646578,7646678-7646765,7646872-7646976,7647065-7647162,7647251-7647334,7647427-7647611,7647713-7647785,7647868-7647913,7648012-7648121,7648219-7648326,7648413-7648469,7648550-7648611,7648694-7649006,7649194-7650066	AT2G17580.1  CDS  gene_syn MJB20.14, MJB20_14  go_component chloroplast|GO:0009507|18431481|IDA  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_process RNA processing|GO:0006396||ISS  go_function RNA binding|GO:0003723||ISS  product polynucleotide adenylyltransferase family protein  note polynucleotide adenylyltransferase family protein; FUNCTIONS IN: RNA binding, nucleotidyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotide adenylyltransferase region (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: polynucleotide adenylyltransferase family protein (TAIR:AT1G28090.3); Has 5705 Blast hits to 5585 proteins in 1348 species: Archae - 0; Bacteria - 3039; Metazoa - 335; Fungi - 203; Plants - 65; Viruses - 8; Other Eukaryotes - 2055 (source: NCBI BLink).  protein_id AT2G17580.1p  transcript_id AT2G17580.1  protein_id AT2G17580.1p  transcript_id AT2G17580.1  
At2g17590	chr2:007651257	0.0	C/7651257-7653155	AT2G17590.1  CDS  gene_syn MJB20.15, MJB20_15  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT2G17600.1); Has 1011 Blast hits to 451 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 1008; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G17590.1p  transcript_id AT2G17590.1  protein_id AT2G17590.1p  transcript_id AT2G17590.1  
At2g17600	chr2:007654477	0.0	C/7654477-7656219	AT2G17600.1  CDS  gene_syn MJB20.16, MJB20_16  product DC1 domain-containing protein  note DC1 domain-containing protein; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT2G17590.1); Has 1177 Blast hits to 485 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 1158; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT2G17600.1p  transcript_id AT2G17600.1  protein_id AT2G17600.1p  transcript_id AT2G17600.1  
At2g17610	chr2:007657604	0.0	C/7657604-7660014	AT2G17610.1  mRNA_TE_gene  pseudo  gene_syn T19E12.5, T19E12_5  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 3.6e-21 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)  
At2g17620	chr2:007664164	0.0	W/7664164-7664224,7664332-7664467,7664556-7664621,7664700-7664856,7664943-7665071,7665158-7665247,7665322-7665543,7665640-7665738,7665828-7666006,7666111-7666261	AT2G17620.1  CDS  gene_syn CYCB2;1, Cyclin B2;1, T19E12.4, T19E12_4  gene CYCB2;1  go_component nucleus|GO:0005634||IEA  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase regulator activity|GO:0016538||ISS  product CYCB2;1 (Cyclin B2;1); cyclin-dependent protein kinase regulator  note Cyclin B2;1 (CYCB2;1); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCB2;2 (Cyclin B2;2); cyclin-dependent protein kinase regulator (TAIR:AT4G35620.1); Has 3400 Blast hits to 3399 proteins in 298 species: Archae - 0; Bacteria - 0; Metazoa - 1740; Fungi - 374; Plants - 738; Viruses - 38; Other Eukaryotes - 510 (source: NCBI BLink).  protein_id AT2G17620.1p  transcript_id AT2G17620.1  protein_id AT2G17620.1p  transcript_id AT2G17620.1  
At2g17630	chr2:007666637	0.0	W/7666637-7667905	AT2G17630.1  CDS  gene_syn T19E12.3, T19E12_3  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function catalytic activity|GO:0003824||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_function O-phospho-L-serine:2-oxoglutarate aminotransferase activity|GO:0004648||ISS  go_function transaminase activity|GO:0008483||ISS  product phosphoserine aminotransferase, putative  note phosphoserine aminotransferase, putative; FUNCTIONS IN: pyridoxal phosphate binding, transaminase activity, catalytic activity, O-phospho-L-serine:2-oxoglutarate aminotransferase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase, class V/Cysteine desulfurase (InterPro:IPR000192), Phosphoserine aminotransferase (InterPro:IPR003248), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: PSAT; O-phospho-L-serine:2-oxoglutarate aminotransferase (TAIR:AT4G35630.1); Has 3399 Blast hits to 3398 proteins in 981 species: Archae - 32; Bacteria - 1822; Metazoa - 150; Fungi - 92; Plants - 37; Viruses - 0; Other Eukaryotes - 1266 (source: NCBI BLink).  protein_id AT2G17630.1p  transcript_id AT2G17630.1  protein_id AT2G17630.1p  transcript_id AT2G17630.1  
At2g17640	chr2:007670086	0.0	C/7670086-7670226,7669631-7669828,7669498-7669557,7669317-7669412,7669204-7669228,7668970-7669064,7668704-7668870,7668545-7668618,7668397-7668456,7668238-7668293	AT2G17640.1  CDS  gene_syn ATSERAT3;1, SAT-106, SERINE ACETYLTRANSFERASE 106, T17A5.1, T17A5_1  gene ATSERAT3;1  function Encodes a cytosolic serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system. Expression is induced after long-term sulfur starvation.  go_component cytosol|GO:0005829|15579666|IDA  go_process sulfate assimilation|GO:0000103|15579666|TAS  go_function serine O-acetyltransferase activity|GO:0009001|15579666|IDA  go_function serine O-acetyltransferase activity|GO:0009001|15579666|IGI  go_function serine O-acetyltransferase activity|GO:0009001||ISS  go_function acetyltransferase activity|GO:0016407||ISS  product ATSERAT3;1; acetyltransferase/ serine O-acetyltransferase  note ATSERAT3;1; FUNCTIONS IN: acetyltransferase activity, serine O-acetyltransferase activity; INVOLVED IN: sulfate assimilation; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine O-acetyltransferase (InterPro:IPR005881), Hexapeptide transferase, conserved site (InterPro:IPR018357), Trimeric LpxA-like (InterPro:IPR011004), Bacterial transferase hexapeptide repeat (InterPro:IPR001451), Serine acetyltransferase, N-terminal (InterPro:IPR010493); BEST Arabidopsis thaliana protein match is: ATSERAT3;2 (Serine acetyltransferase 3;2); acetyltransferase/ serine O-acetyltransferase (TAIR:AT4G35640.1); Has 14802 Blast hits to 14794 proteins in 1410 species: Archae - 246; Bacteria - 9385; Metazoa - 1; Fungi - 151; Plants - 199; Viruses - 0; Other Eukaryotes - 4820 (source: NCBI BLink).  protein_id AT2G17640.1p  transcript_id AT2G17640.1  protein_id AT2G17640.1p  transcript_id AT2G17640.1  
At2g17650	chr2:007671041	0.0	W/7671041-7671379,7671464-7672936	AT2G17650.1  CDS  gene_syn T17A5.12, T17A5_12  go_component mitochondrion|GO:0005739||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  product AMP-dependent synthetase and ligase family protein  note AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: carpel; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AAE1 (ACYL ACTIVATING ENZYME 1); AMP binding (TAIR:AT1G20560.1); Has 48634 Blast hits to 45719 proteins in 2114 species: Archae - 569; Bacteria - 26315; Metazoa - 2793; Fungi - 1766; Plants - 1112; Viruses - 1; Other Eukaryotes - 16078 (source: NCBI BLink).  protein_id AT2G17650.1p  transcript_id AT2G17650.1  protein_id AT2G17650.1p  transcript_id AT2G17650.1  
At2g17660	chr2:007673359	0.0	W/7673359-7673568	AT2G17660.1  CDS  go_component cellular_component|GO:0005575||ND  go_process response to nitrate|GO:0010167||ISS  go_function molecular_function|GO:0003674||ND  product nitrate-responsive NOI protein, putative  note nitrate-responsive NOI protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to nitrate; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Defence response, Rin4 (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35655.1); Has 139 Blast hits to 138 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G17660.1p  transcript_id AT2G17660.1  protein_id AT2G17660.1p  transcript_id AT2G17660.1  
At2g17670	chr2:007674420	0.0	W/7674420-7675464,7675571-7675575	AT2G17670.2  CDS  gene_syn T17A5.11, T17A5_11  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: MEE40 (maternal effect embryo arrest 40) (TAIR:AT3G53700.1); Has 15641 Blast hits to 4769 proteins in 149 species: Archae - 5; Bacteria - 14; Metazoa - 181; Fungi - 234; Plants - 14756; Viruses - 0; Other Eukaryotes - 451 (source: NCBI BLink).  protein_id AT2G17670.2p  transcript_id AT2G17670.2  protein_id AT2G17670.2p  transcript_id AT2G17670.2  
At2g17670	chr2:007674420	0.0	W/7674420-7675811	AT2G17670.1  CDS  gene_syn T17A5.11, T17A5_11  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: MEE40 (maternal effect embryo arrest 40) (TAIR:AT3G53700.1); Has 19381 Blast hits to 5780 proteins in 170 species: Archae - 5; Bacteria - 14; Metazoa - 420; Fungi - 382; Plants - 17857; Viruses - 0; Other Eukaryotes - 703 (source: NCBI BLink).  protein_id AT2G17670.1p  transcript_id AT2G17670.1  protein_id AT2G17670.1p  transcript_id AT2G17670.1  
At2g17680	chr2:007679241	0.0	W/7679241-7680119	AT2G17680.1  CDS  gene_syn T17A5.19, T17A5_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF241, plant (InterPro:IPR004320); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35690.1); Has 224 Blast hits to 220 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 224; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G17680.1p  transcript_id AT2G17680.1  protein_id AT2G17680.1p  transcript_id AT2G17680.1  
At2g17690	chr2:007682818	0.0	W/7682818-7684083	AT2G17690.1  CDS  gene_syn SDC, SUPPRESSOR OF DRM1 DRM2 CMT3, T17A5.18, T17A5_18  gene SDC  function Encodes an F-box domain containing protein that is regulated by non-CG DNA methylation. In drm1 drm2 cmt3 triple mutant background SDC expression is no longer suppressed and plants display abnormal development including curled leaves and reduced stature.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SDC (SUPPRESSOR OF DRM1 DRM2 CMT3)  note SUPPRESSOR OF DRM1 DRM2 CMT3 (SDC); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G65760.1); Has 123 Blast hits to 113 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 123; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G17690.1p  transcript_id AT2G17690.1  protein_id AT2G17690.1p  transcript_id AT2G17690.1  
At2g17695	chr2:007684951	0.0	C/7684951-7685009,7684670-7684846,7684214-7684595	AT2G17695.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 143 Blast hits to 143 proteins in 64 species: Archae - 0; Bacteria - 104; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G17695.1p  transcript_id AT2G17695.1  protein_id AT2G17695.1p  transcript_id AT2G17695.1  
At2g17695	chr2:007684951	0.0	C/7684951-7685009,7684670-7684846,7684214-7684595	AT2G17695.2  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 143 Blast hits to 143 proteins in 64 species: Archae - 0; Bacteria - 104; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G17695.2p  transcript_id AT2G17695.2  protein_id AT2G17695.2p  transcript_id AT2G17695.2  
At2g17700	chr2:007689076	0.0	C/7689076-7689278,7688650-7688764,7688492-7688571,7688284-7688394,7688115-7688169,7687858-7687968,7687705-7687755,7687381-7687553,7687185-7687292,7686881-7686954,7686624-7686799,7686375-7686470,7686170-7686250,7686024-7686077,7685778-7685930	AT2G17700.1  CDS  gene_syn T17A5.2, T17A5_2  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process metabolic process|GO:0008152||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_function protein kinase activity|GO:0004672||ISS  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, protein kinase activity; INVOLVED IN: protein amino acid phosphorylation, metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Amino acid-binding ACT (InterPro:IPR002912), Tyrosine protein kinase (InterPro:IPR001245), ATMRK serine/threonine protein kinase-like (InterPro:IPR015783), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G35780.1); Has 96313 Blast hits to 94567 proteins in 3644 species: Archae - 66; Bacteria - 7949; Metazoa - 43567; Fungi - 7900; Plants - 19163; Viruses - 465; Other Eukaryotes - 17203 (source: NCBI BLink).  protein_id AT2G17700.1p  transcript_id AT2G17700.1  protein_id AT2G17700.1p  transcript_id AT2G17700.1  
At2g17705	chr2:007692506	0.0	W/7692506-7692889	AT2G17705.1  CDS  go_component plasma membrane|GO:0005886|17644812|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08330.1); Has 74 Blast hits to 74 proteins in 21 species: Archae - 5; Bacteria - 14; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT2G17705.1p  transcript_id AT2G17705.1  protein_id AT2G17705.1p  transcript_id AT2G17705.1  
At2g17710	chr2:007693856	0.0	W/7693856-7694083,7694177-7694256,7694404-7694554	AT2G17710.1  CDS  gene_syn T17A5.17, T17A5_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 19 Blast hits to 19 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G17710.1p  transcript_id AT2G17710.1  protein_id AT2G17710.1p  transcript_id AT2G17710.1  
At2g17720	chr2:007697513	0.0	W/7697513-7697706,7697804-7697897,7698182-7698279,7698360-7698457,7698612-7698741,7698827-7699014,7699101-7699174	AT2G17720.1  CDS  gene_syn T17A5.10, T17A5_10  go_process protein metabolic process|GO:0019538||IEA  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||IEA  go_process peptidyl-proline hydroxylation to 4-hydroxy-L-proline|GO:0018401||ISS  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding; INVOLVED IN: protein metabolic process, peptidyl-proline hydroxylation to 4-hydroxy-L-proline; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G35810.1); Has 1856 Blast hits to 1846 proteins in 220 species: Archae - 0; Bacteria - 197; Metazoa - 947; Fungi - 57; Plants - 221; Viruses - 14; Other Eukaryotes - 420 (source: NCBI BLink).  protein_id AT2G17720.1p  transcript_id AT2G17720.1  protein_id AT2G17720.1p  transcript_id AT2G17720.1  
At2g17723	chr2:007700134	0.0	W/7700134-7700194,7700470-7700675	AT2G17723.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G17723.1p  transcript_id AT2G17723.1  protein_id AT2G17723.1p  transcript_id AT2G17723.1  
At2g17730	chr2:007704142	0.0	W/7704142-7704313,7704487-7704665,7704754-7704837,7704940-7705107,7705190-7705312	AT2G17730.1  CDS  gene_syn T17A5.9, T17A5_9  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G35840.1); Has 6143 Blast hits to 6124 proteins in 203 species: Archae - 0; Bacteria - 2; Metazoa - 1970; Fungi - 448; Plants - 2740; Viruses - 17; Other Eukaryotes - 966 (source: NCBI BLink).  protein_id AT2G17730.1p  transcript_id AT2G17730.1  protein_id AT2G17730.1p  transcript_id AT2G17730.1  
At2g17740	chr2:007707082	0.0	C/7707082-7707828	AT2G17740.1  CDS  gene_syn T17A5.16, T17A5_16  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT2G44370.1); Has 1570 Blast hits to 551 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1562; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT2G17740.1p  transcript_id AT2G17740.1  protein_id AT2G17740.1p  transcript_id AT2G17740.1  
At2g17750	chr2:007711014	0.0	C/7711014-7711151,7710831-7710917,7710338-7710571,7710097-7710255,7709958-7710011,7709708-7709851,7709238-7709612	AT2G17750.1  CDS  gene_syn T17A5.3, T17A5_3  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19360.1); Has 433 Blast hits to 401 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 10; Plants - 419; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G17750.1p  transcript_id AT2G17750.1  protein_id AT2G17750.1p  transcript_id AT2G17750.1  
At2g17760	chr2:007713488	0.0	W/7713488-7713792,7713945-7714080,7714483-7714718,7714862-7715086,7715193-7715328,7715404-7715480,7715560-7715659,7715743-7715800,7715899-7715970,7716073-7716269	AT2G17760.1  CDS  gene_syn T17A5.8, T17A5_8  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT4G35880.1); Has 1616 Blast hits to 1610 proteins in 172 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 313; Plants - 988; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT2G17760.1p  transcript_id AT2G17760.1  protein_id AT2G17760.1p  transcript_id AT2G17760.1  
At2g17770	chr2:007723103	0.0	W/7723103-7723573	AT2G17770.1  CDS  gene_syn ATBZIP27, FD PARALOG, FDP, T17A5.15, T17A5_15  gene ATBZIP27  function Encodes a paralog of bZIP transcription factor FD. This protein interacts with FD and FT.  go_process response to chitin|GO:0010200|17722694|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  product ATBZIP27; transcription factor  note ATBZIP27; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to chitin; EXPRESSED IN: shoot apex, leaf whorl, embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827); BEST Arabidopsis thaliana protein match is: FD; DNA binding / protein binding / transcription activator/ transcription factor (TAIR:AT4G35900.1); Has 107 Blast hits to 107 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G17770.1p  transcript_id AT2G17770.1  protein_id AT2G17770.1p  transcript_id AT2G17770.1  
At2g17780	chr2:007726542	0.0	C/7726542-7726952,7726072-7726466,7725808-7725946	AT2G17780.4  CDS  gene_syn MCA2, T17A5.4, T17A5_4, mid1-complementing activity 2  gene MCA2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MCA2 (mid1-complementing activity 2)  note mid1-complementing activity 2 (MCA2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: MCA1 (mid1-complementing activity 1) (TAIR:AT4G35920.3); Has 247 Blast hits to 241 proteins in 29 species: Archae - 0; Bacteria - 7; Metazoa - 19; Fungi - 4; Plants - 195; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT2G17780.4p  transcript_id AT2G17780.4  protein_id AT2G17780.4p  transcript_id AT2G17780.4  
At2g17780	chr2:007726542	0.0	C/7726542-7726952,7726072-7726466,7725837-7725946,7725644-7725715,7725445-7725551,7725236-7725373	AT2G17780.3  CDS  gene_syn MCA2, T17A5.4, T17A5_4, mid1-complementing activity 2  gene MCA2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MCA2 (mid1-complementing activity 2)  note mid1-complementing activity 2 (MCA2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: MCA1 (mid1-complementing activity 1) (TAIR:AT4G35920.3); Has 457 Blast hits to 450 proteins in 66 species: Archae - 0; Bacteria - 7; Metazoa - 37; Fungi - 32; Plants - 356; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT2G17780.3p  transcript_id AT2G17780.3  protein_id AT2G17780.3p  transcript_id AT2G17780.3  
At2g17780	chr2:007726542	0.0	C/7726542-7726952,7726072-7726466,7725837-7725946,7725644-7725715,7725445-7725551,7725277-7725373,7725155-7725207	AT2G17780.2  CDS  gene_syn MCA2, T17A5.4, T17A5_4, mid1-complementing activity 2  gene MCA2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MCA2 (mid1-complementing activity 2)  note mid1-complementing activity 2 (MCA2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: MCA1 (mid1-complementing activity 1) (TAIR:AT4G35920.3); Has 453 Blast hits to 446 proteins in 63 species: Archae - 0; Bacteria - 7; Metazoa - 37; Fungi - 27; Plants - 357; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT2G17780.2p  transcript_id AT2G17780.2  protein_id AT2G17780.2p  transcript_id AT2G17780.2  
At2g17780	chr2:007726542	0.0	C/7726542-7726952,7726072-7726466,7725837-7725946,7725644-7725715,7725445-7725551,7725277-7725373,7725155-7725213	AT2G17780.1  CDS  gene_syn MCA2, T17A5.4, T17A5_4, mid1-complementing activity 2  gene MCA2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MCA2 (mid1-complementing activity 2)  note mid1-complementing activity 2 (MCA2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: MCA1 (mid1-complementing activity 1) (TAIR:AT4G35920.3); Has 460 Blast hits to 453 proteins in 64 species: Archae - 0; Bacteria - 7; Metazoa - 37; Fungi - 29; Plants - 362; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT2G17780.1p  transcript_id AT2G17780.1  protein_id AT2G17780.1p  transcript_id AT2G17780.1  
At2g17785	chr2:007728766	0.0	C/7728766-7728927,7728612-7728686,7728186-7728527	AT2G17785.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product zinc-binding protein-related  note zinc-binding protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 26 Blast hits to 26 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G17785.1p  transcript_id AT2G17785.1  protein_id AT2G17785.1p  transcript_id AT2G17785.1  
At2g17787	chr2:007731374	0.0	W/7731374-7731442,7731856-7732141,7732234-7732853	AT2G17787.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35940.1); Has 581 Blast hits to 485 proteins in 86 species: Archae - 0; Bacteria - 6; Metazoa - 228; Fungi - 37; Plants - 71; Viruses - 0; Other Eukaryotes - 239 (source: NCBI BLink).  protein_id AT2G17787.1p  transcript_id AT2G17787.1  protein_id AT2G17787.1p  transcript_id AT2G17787.1  
At2g17790	chr2:007733685	0.0	W/7733685-7733777,7733939-7734035,7734141-7734264,7734501-7734686,7734875-7734962,7735159-7735215,7735310-7735399,7735490-7735612,7735757-7735891,7736247-7736363,7736787-7737026,7737112-7737177,7737294-7737383,7737636-7737725,7737915-7738004,7738250-7738318,7738393-7738473,7738577-7738684,7738774-7738877,7738950-7739063,7739143-7739344	AT2G17790.1  CDS  gene_syn T17A5.7, T17A5_7, VPS35 HOMOLOG A, VPS35A  gene VPS35A  go_component cellular_component|GO:0005575||ND  go_process intracellular protein transport|GO:0006886||ISS  go_process retrograde transport, endosome to Golgi|GO:0042147||ISS  go_function molecular_function|GO:0003674||ND  product VPS35A (VPS35 HOMOLOG A)  note VPS35 HOMOLOG A (VPS35A); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport, retrograde transport, endosome to Golgi; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 35 (InterPro:IPR005378); BEST Arabidopsis thaliana protein match is: VPS35B (VPS35 HOMOLOG B) (TAIR:AT1G75850.1); Has 463 Blast hits to 387 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 173; Fungi - 144; Plants - 38; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT2G17790.1p  transcript_id AT2G17790.1  protein_id AT2G17790.1p  transcript_id AT2G17790.1  
At2g17800	chr2:007740313	0.0	W/7740313-7740411,7740605-7740692,7740782-7740891,7740991-7741054,7741529-7741593,7741685-7741750,7741841-7741942	AT2G17800.1  CDS  gene_syn ARAC1, ATGP2, ATRAC1, ATROP3, RHO-RELATED GTPASES FROM PLANTS 3, ROP3, T17A5.14, T17A5_14  gene ARAC1  function A member of ROP GTPase family. Rac-like GTP-binding protein ARAC1/ATGP2. Encodes a geranylgeranylated GTP binding protein. Involved in the auxin-activated 26S proteasome-dependent Aux/IAA proteolysis pathway.  go_function GTP binding|GO:0005525||IEA  go_component nucleus|GO:0005634|15469496|IDA  go_component cytoplasm|GO:0005737|15469496|IDA  go_component spindle|GO:0005819|15469496|IDA  go_component phragmoplast|GO:0009524|15469496|IDA  go_process auxin mediated signaling pathway|GO:0009734|15994909|IMP  go_process abscisic acid mediated signaling|GO:0009738|11459830|TAS  go_function GTP binding|GO:0005525||ISS  product ARAC1; GTP binding  note ARAC1; FUNCTIONS IN: GTP binding; INVOLVED IN: auxin mediated signaling pathway, abscisic acid mediated signaling; LOCATED IN: nucleus, spindle, phragmoplast, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rho type (InterPro:IPR003578); BEST Arabidopsis thaliana protein match is: ARAC6 (ARABIDOPSIS RAC-LIKE 6); GTP binding (TAIR:AT4G35950.1); Has 19451 Blast hits to 19425 proteins in 560 species: Archae - 9; Bacteria - 44; Metazoa - 10804; Fungi - 2365; Plants - 1721; Viruses - 19; Other Eukaryotes - 4489 (source: NCBI BLink).  protein_id AT2G17800.1p  transcript_id AT2G17800.1  protein_id AT2G17800.1p  transcript_id AT2G17800.1  
At2g17800	chr2:007740313	0.0	W/7740313-7740411,7740605-7740692,7740782-7740891,7740991-7741054,7741529-7741593,7741685-7741750,7741841-7741942	AT2G17800.2  CDS  gene_syn ARAC1, ATGP2, ATRAC1, ATROP3, RHO-RELATED GTPASES FROM PLANTS 3, ROP3, T17A5.14, T17A5_14  gene ARAC1  function A member of ROP GTPase family. Rac-like GTP-binding protein ARAC1/ATGP2. Encodes a geranylgeranylated GTP binding protein. Involved in the auxin-activated 26S proteasome-dependent Aux/IAA proteolysis pathway.  go_function GTP binding|GO:0005525||IEA  go_component nucleus|GO:0005634|15469496|IDA  go_component cytoplasm|GO:0005737|15469496|IDA  go_component spindle|GO:0005819|15469496|IDA  go_component phragmoplast|GO:0009524|15469496|IDA  go_process auxin mediated signaling pathway|GO:0009734|15994909|IMP  go_process abscisic acid mediated signaling|GO:0009738|11459830|TAS  go_function GTP binding|GO:0005525||ISS  product ARAC1; GTP binding  note ARAC1; FUNCTIONS IN: GTP binding; INVOLVED IN: auxin mediated signaling pathway, abscisic acid mediated signaling; LOCATED IN: nucleus, spindle, phragmoplast, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rho type (InterPro:IPR003578); BEST Arabidopsis thaliana protein match is: ARAC6 (ARABIDOPSIS RAC-LIKE 6); GTP binding (TAIR:AT4G35950.1); Has 19451 Blast hits to 19425 proteins in 560 species: Archae - 9; Bacteria - 44; Metazoa - 10804; Fungi - 2365; Plants - 1721; Viruses - 19; Other Eukaryotes - 4489 (source: NCBI BLink).  protein_id AT2G17800.2p  transcript_id AT2G17800.2  protein_id AT2G17800.2p  transcript_id AT2G17800.2  
At2g17810	chr2:007742712	0.0	W/7742712-7742785	AT2G17810.1  tRNA  gene_syn 50831.TRNA-ILE-1, 50894.TRNA-ILE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ile (anticodon: AAT)  transcript_id AT2G17810.1  
At2g17820	chr2:007747759	0.0	C/7747759-7748013,7747348-7747590,7746496-7747269,7746162-7746409,7745901-7746060,7745569-7745695,7745382-7745471,7745103-7745297,7744933-7745002,7744796-7744838,7744575-7744712,7743440-7744483,7743133-7743369	AT2G17820.1  CDS  gene_syn AHK1, ATHK1, T13L16.16, T13L16_16, histidine kinase 1  gene ATHK1  function Encodes a member of the histidine kinase family.  go_component membrane|GO:0016020||IEA  go_process response to osmotic stress|GO:0006970|10488240|IMP  go_process response to water deprivation|GO:0009414|18077346|IEP  go_process response to water deprivation|GO:0009414|18077346|IMP  go_process seed maturation|GO:0010431|18441212|IMP  go_function protein histidine kinase activity|GO:0004673||ISS  go_function osmosensor activity|GO:0005034|10488240|IMP  go_function osmosensor activity|GO:0005034|18077346|IGI  go_function histidine phosphotransfer kinase activity|GO:0009927|10488240|IMP  product ATHK1 (histidine kinase 1); histidine phosphotransfer kinase/ osmosensor/ protein histidine kinase  note histidine kinase 1 (ATHK1); FUNCTIONS IN: osmosensor activity, protein histidine kinase activity, histidine phosphotransfer kinase activity; INVOLVED IN: response to water deprivation, seed maturation, response to osmotic stress; LOCATED IN: membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), CheY-like (InterPro:IPR011006), Signal transduction histidine kinase, core (InterPro:IPR005467), Signal transduction response regulator, receiver region (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region (InterPro:IPR003661), ATP-binding region, ATPase-like (InterPro:IPR003594), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: CKI1 (CYTOKININ-INDEPENDENT 1); protein histidine kinase/ two-component response regulator (TAIR:AT2G47430.1); Has 88136 Blast hits to 77690 proteins in 1799 species: Archae - 481; Bacteria - 73324; Metazoa - 25; Fungi - 1627; Plants - 1419; Viruses - 27; Other Eukaryotes - 11233 (source: NCBI BLink).  protein_id AT2G17820.1p  transcript_id AT2G17820.1  protein_id AT2G17820.1p  transcript_id AT2G17820.1  
At2g17830	chr2:007754261	0.0	W/7754261-7755445	AT2G17830.1  CDS  gene_syn T13L16.15, T13L16_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42460.1); Has 839 Blast hits to 810 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 837; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G17830.1p  transcript_id AT2G17830.1  protein_id AT2G17830.1p  transcript_id AT2G17830.1  
At2g17840	chr2:007756870	0.0	C/7756870-7757798,7756370-7756536,7756198-7756282,7755923-7756100	AT2G17840.1  CDS  gene_syn EARLY-RESPONSIVE TO DEHYDRATION 7, ERD7, T13L16.14, T13L16_14  gene ERD7  function Identified as drought-inducible gene by differential hybridization. Upregulated by high light, drought, cold and salt stress determined by microarray analysis.  go_component plasma membrane|GO:0005886|14506206|IDA  go_process response to cold|GO:0009409|12785063|IEP  go_process response to water deprivation|GO:0009414|8075396|IEP  go_process response to high light intensity|GO:0009644|12785063|IEP  go_process response to salt stress|GO:0009651|12785063|IEP  go_function molecular_function|GO:0003674||ND  product ERD7 (EARLY-RESPONSIVE TO DEHYDRATION 7)  note EARLY-RESPONSIVE TO DEHYDRATION 7 (ERD7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress, response to high light intensity, response to water deprivation, response to cold; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Senescence-associated (InterPro:IPR009686); BEST Arabidopsis thaliana protein match is: senescence/dehydration-associated protein-related (TAIR:AT4G35985.1); Has 175 Blast hits to 175 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 61; Fungi - 22; Plants - 81; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT2G17840.1p  transcript_id AT2G17840.1  protein_id AT2G17840.1p  transcript_id AT2G17840.1  
At2g17845	chr2:007758846	0.0	W/7758846-7758977,7759075-7759881	AT2G17845.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: male gametophyte, sepal, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT3G55290.2); Has 85741 Blast hits to 85590 proteins in 2291 species: Archae - 491; Bacteria - 45965; Metazoa - 6379; Fungi - 4232; Plants - 1844; Viruses - 2; Other Eukaryotes - 26828 (source: NCBI BLink).  protein_id AT2G17845.1p  transcript_id AT2G17845.1  protein_id AT2G17845.1p  transcript_id AT2G17845.1  
At2g17850	chr2:007760627	0.0	C/7760627-7760787,7760380-7760530,7760208-7760261,7760005-7760109	AT2G17850.1  CDS  gene_syn T13L16.13, T13L16_13  go_component endomembrane system|GO:0012505||IEA  go_process aging|GO:0007568||ISS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66170.2); Has 1960 Blast hits to 1954 proteins in 396 species: Archae - 22; Bacteria - 1018; Metazoa - 11; Fungi - 7; Plants - 116; Viruses - 0; Other Eukaryotes - 786 (source: NCBI BLink).  protein_id AT2G17850.1p  transcript_id AT2G17850.1  protein_id AT2G17850.1p  transcript_id AT2G17850.1  
At2g17860	chr2:007762257	0.0	C/7762257-7763018	AT2G17860.1  CDS  gene_syn T13L16.12, T13L16_12  go_component endomembrane system|GO:0012505||IEA  go_process response to other organism|GO:0051707||ISS  go_function molecular_function|GO:0003674||ND  product pathogenesis-related thaumatin family protein  note pathogenesis-related thaumatin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: pathogenesis-related thaumatin family protein (TAIR:AT4G36010.2); Has 1057 Blast hits to 1046 proteins in 145 species: Archae - 0; Bacteria - 22; Metazoa - 48; Fungi - 45; Plants - 930; Viruses - 4; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT2G17860.1p  transcript_id AT2G17860.1  protein_id AT2G17860.1p  transcript_id AT2G17860.1  
At2g17870	chr2:007764276	0.0	C/7764276-7765181	AT2G17870.1  CDS  gene_syn T13L16.11, T13L16_11  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_function nucleic acid binding|GO:0003676||ISS  product cold-shock DNA-binding family protein  note cold-shock DNA-binding family protein; FUNCTIONS IN: DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Cold shock protein (InterPro:IPR011129), Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, CCHC retroviral-type (InterPro:IPR013084), Cold-shock protein, DNA-binding (InterPro:IPR002059); BEST Arabidopsis thaliana protein match is: CSDP1 (cold shock domain protein 1); RNA binding / double-stranded DNA binding / nucleic acid binding / single-stranded DNA binding (TAIR:AT4G36020.1); Has 53154 Blast hits to 27277 proteins in 1824 species: Archae - 36; Bacteria - 18684; Metazoa - 10644; Fungi - 2506; Plants - 4908; Viruses - 6728; Other Eukaryotes - 9648 (source: NCBI BLink).  protein_id AT2G17870.1p  transcript_id AT2G17870.1  protein_id AT2G17870.1p  transcript_id AT2G17870.1  
At2g17880	chr2:007767176	0.0	C/7767176-7767658	AT2G17880.1  CDS  gene_syn T13L16.10, T13L16_10  go_component chloroplast|GO:0009507||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock protein, putative  note DNAJ heat shock protein, putative; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (J11) (TAIR:AT4G36040.1); Has 13518 Blast hits to 13518 proteins in 1859 species: Archae - 87; Bacteria - 4830; Metazoa - 2737; Fungi - 1089; Plants - 967; Viruses - 5; Other Eukaryotes - 3803 (source: NCBI BLink).  protein_id AT2G17880.1p  transcript_id AT2G17880.1  protein_id AT2G17880.1p  transcript_id AT2G17880.1  
At2g17890	chr2:007772199	0.0	C/7772199-7772627,7771914-7772044,7771754-7771795,7771548-7771659,7771378-7771456,7771135-7771304,7770930-7771056,7770729-7770844,7770538-7770645,7770386-7770448,7770130-7770303,7769885-7770049	AT2G17890.1  CDS  gene_syn CALCIUM-DEPENDENT PROTEIN KINASE 16, CPK16, T13L16.9, T13L16_9  gene CPK16  function member of Calcium Dependent Protein Kinase  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  product CPK16; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ protein kinase/ protein serine/threonine kinase  note CPK16; FUNCTIONS IN: protein serine/threonine kinase activity, calmodulin-dependent protein kinase activity, protein kinase activity, calcium ion binding, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CPK18; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT4G36070.1); Has 94175 Blast hits to 92466 proteins in 2752 species: Archae - 81; Bacteria - 8259; Metazoa - 40918; Fungi - 9860; Plants - 16148; Viruses - 467; Other Eukaryotes - 18442 (source: NCBI BLink).  protein_id AT2G17890.1p  transcript_id AT2G17890.1  protein_id AT2G17890.1p  transcript_id AT2G17890.1  
At2g17900	chr2:007776576	0.0	C/7776576-7776675,7776352-7776497,7776129-7776263,7775925-7775979,7775717-7775835,7775532-7775620,7775386-7775467,7775192-7775296,7775010-7775100,7774809-7774928,7774584-7774690,7774420-7774489,7774025-7774088,7773420-7773579	AT2G17900.1  CDS  gene_syn SDG37, SET DOMAIN GROUP 37, T13L16.8, T13L16_8  gene SDG37  function Homology Subgroup S-ET - Protein containing an interrupted SET domain.  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product SDG37; zinc ion binding  note SDG37; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), SET (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: ATXR2 (HISTONE-LYSINE N-METHYLTRANSFERASE ATXR2); zinc ion binding (TAIR:AT3G21820.1); Has 2093 Blast hits to 2029 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 1176; Fungi - 375; Plants - 166; Viruses - 7; Other Eukaryotes - 369 (source: NCBI BLink).  protein_id AT2G17900.1p  transcript_id AT2G17900.1  protein_id AT2G17900.1p  transcript_id AT2G17900.1  
At2g17910	chr2:007778495	0.0	W/7778495-7782529	AT2G17910.1  mRNA_TE_gene  pseudo  gene_syn T13L16.7, T13L16_7  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.8e-42 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At2g17920	chr2:007782808	0.0	W/7782808-7783731	AT2G17920.1  CDS  gene_syn T13L16.6, T13L16_6  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding / zinc ion binding  note nucleic acid binding / zinc ion binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41590.1); Has 165 Blast hits to 165 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 165; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G17920.1p  transcript_id AT2G17920.1  protein_id AT2G17920.1p  transcript_id AT2G17920.1  
At2g17930	chr2:007802173	0.0	C/7802173-7802230,7801260-7801975,7800787-7800872,7800506-7800614,7800152-7800247,7799970-7800032,7799828-7799887,7799323-7799391,7798872-7798935,7798729-7798781,7798571-7798597,7797260-7798492,7795852-7796841,7795423-7795758,7794864-7795122,7794555-7794777,7794039-7794429,7793422-7793571,7793095-7793316,7792676-7792897,7791606-7792256,7791129-7791386,7790686-7791033,7789866-7790278,7789358-7789775,7787863-7789161,7787418-7787678,7787033-7787323,7786525-7786953,7785974-7786405,7785579-7785857,7784952-7785503,7784646-7784855,7784455-7784574	AT2G17930.1  CDS  gene_syn T13L16.5, T13L16_5  go_function binding|GO:0005488||IEA  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_function inositol or phosphatidylinositol kinase activity|GO:0004428||ISS  product binding / inositol or phosphatidylinositol kinase/ phosphotransferase, alcohol group as acceptor  note binding / inositol or phosphatidylinositol kinase/ phosphotransferase, alcohol group as acceptor; FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, binding, phosphotransferase activity, alcohol group as acceptor; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3- and 4-kinase, catalytic (InterPro:IPR000403), PIK-related kinase, FAT (InterPro:IPR003151), Armadillo-type fold (InterPro:IPR016024), PIK-related kinase (InterPro:IPR014009), PIK-related kinase, FATC (InterPro:IPR003152), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: FAT domain-containing protein / phosphatidylinositol 3- and 4-kinase family protein (TAIR:AT4G36080.1); Has 1645 Blast hits to 1356 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 706; Fungi - 475; Plants - 114; Viruses - 0; Other Eukaryotes - 350 (source: NCBI BLink).  protein_id AT2G17930.1p  transcript_id AT2G17930.1  protein_id AT2G17930.1p  transcript_id AT2G17930.1  
At2g17940	chr2:007802878	0.0	W/7802878-7803015,7803327-7803815	AT2G17940.1  CDS  gene_syn T27K22.19, T27K22_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); Has 47 Blast hits to 39 proteins in 14 species: Archae - 0; Bacteria - 4; Metazoa - 12; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G17940.1p  transcript_id AT2G17940.1  protein_id AT2G17940.1p  transcript_id AT2G17940.1  
At2g17950	chr2:007810176	0.0	C/7810176-7810671,7809485-7809573,7809100-7809393	AT2G17950.1  CDS  gene_syn PGA6, T27K22.18, T27K22_18, WUS, WUS1, WUSCHEL, WUSCHEL 1  gene WUS  function Homeobox gene controlling the stem cell pool. Expressed in the stem cell organizing center of meristems. Required to keep the stem cells in an undifferentiated state. Regulation of WUS transcription is a central checkpoint in stem cell control. The size of the WUS expression domain controls the size of the stem cell population through WUS indirectly activating the expression of CLAVATA3 (CLV3) in the stem cells and CLV3 repressing WUS transcription through the CLV1 receptor kinase signaling pathway. Repression of WUS transcription through AGAMOUS (AG) activity controls stem cell activity in the determinate floral meristem. Binds to TAAT element core motif.  go_component nucleus|GO:0005634||IEA  go_process maintenance of shoot apical meristem identity|GO:0010492|17461786|IGI  go_process stem cell maintenance|GO:0019827|15705957|IDA  go_process stem cell maintenance|GO:0019827|8565856|IMP  go_process response to ethanol|GO:0045471|16603652|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9865698|TAS  go_function protein binding|GO:0005515|16461579|IPI  go_function transcription regulator activity|GO:0030528|10761929|TAS  product WUS (WUSCHEL); DNA binding / protein binding / transcription factor/ transcription regulator  note WUSCHEL (WUS); FUNCTIONS IN: protein binding, transcription factor activity, transcription regulator activity, DNA binding; INVOLVED IN: maintenance of shoot apical meristem identity, stem cell maintenance, response to ethanol; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WOX1 (WUSCHEL related homeobox 1); transcription factor (TAIR:AT3G18010.1); Has 367 Blast hits to 367 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 2; Plants - 327; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT2G17950.1p  transcript_id AT2G17950.1  protein_id AT2G17950.1p  transcript_id AT2G17950.1  
At2g17960	chr2:007812839	0.0	C/7812839-7813129,7812380-7812454	AT2G17960.1  CDS  gene_syn T27K22.17, T27K22_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G17960.1p  transcript_id AT2G17960.1  protein_id AT2G17960.1p  transcript_id AT2G17960.1  
At2g17970	chr2:007820265	0.0	C/7820265-7820787,7820092-7820177,7819689-7819999,7819512-7819583,7819116-7819425	AT2G17970.2  CDS  gene_syn T27K22.16, T27K22_16  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G36090.3); Has 134 Blast hits to 134 proteins in 42 species: Archae - 0; Bacteria - 4; Metazoa - 48; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT2G17970.2p  transcript_id AT2G17970.2  protein_id AT2G17970.2p  transcript_id AT2G17970.2  
At2g17970	chr2:007821126	0.0	C/7821126-7821276,7820265-7820858,7820092-7820177,7819689-7819999,7819512-7819583,7819116-7819425	AT2G17970.1  CDS  gene_syn T27K22.16, T27K22_16  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G36090.3); Has 149 Blast hits to 149 proteins in 49 species: Archae - 0; Bacteria - 4; Metazoa - 53; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT2G17970.1p  transcript_id AT2G17970.1  protein_id AT2G17970.1p  transcript_id AT2G17970.1  
At2g17972	chr2:007821624	0.0	W/7821624-7822100	AT2G17972.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 19 Blast hits to 19 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G17972.1p  transcript_id AT2G17972.1  protein_id AT2G17972.1p  transcript_id AT2G17972.1  
At2g17975	chr2:007823805	0.0	C/7823805-7823970,7823106-7823374,7822990-7823020,7822809-7822882,7822587-7822714,7822398-7822478,7822238-7822295	AT2G17975.1  CDS  gene_syn T27K22.20  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function binding|GO:0005488||ISS  product zinc finger (Ran-binding) family protein  note zinc finger (Ran-binding) family protein; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: zinc finger (Ran-binding) family protein (TAIR:AT5G25490.1); Has 893 Blast hits to 535 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 304; Fungi - 62; Plants - 313; Viruses - 0; Other Eukaryotes - 214 (source: NCBI BLink).  protein_id AT2G17975.1p  transcript_id AT2G17975.1  protein_id AT2G17975.1p  transcript_id AT2G17975.1  
At2g17980	chr2:007824352	0.0	W/7824352-7824382,7824552-7826404	AT2G17980.1  CDS  gene_syn ATSLY1, T27K22.15, T27K22_15  gene ATSLY1  function member of SLY1 Gene Family  go_process vesicle docking during exocytosis|GO:0006904||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_process protein secretion|GO:0009306||ISS  go_function protein transporter activity|GO:0008565||ISS  product ATSLY1; protein transporter  note ATSLY1; FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein secretion, vesicle-mediated transport, vesicle docking during exocytosis; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31740.1); Has 1159 Blast hits to 1149 proteins in 164 species: Archae - 0; Bacteria - 1; Metazoa - 557; Fungi - 264; Plants - 97; Viruses - 0; Other Eukaryotes - 240 (source: NCBI BLink).  protein_id AT2G17980.1p  transcript_id AT2G17980.1  protein_id AT2G17980.1p  transcript_id AT2G17980.1  
At2g17990	chr2:007827480	0.0	W/7827480-7828321,7828422-7828596	AT2G17990.1  CDS  gene_syn T27K22.14, T27K22_14  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: kinectin-related (TAIR:AT5G66250.3); Has 6110 Blast hits to 4860 proteins in 486 species: Archae - 160; Bacteria - 541; Metazoa - 3188; Fungi - 404; Plants - 270; Viruses - 41; Other Eukaryotes - 1506 (source: NCBI BLink).  protein_id AT2G17990.1p  transcript_id AT2G17990.1  protein_id AT2G17990.1p  transcript_id AT2G17990.1  
At2g18000	chr2:007829035	0.0	W/7829035-7829121,7829356-7829444,7829545-7829766,7829849-7830059	AT2G18000.1  CDS  gene_syn T27K22.13, T27K22_13, TAF14, TBP-associated factor 14  gene TAF14  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  product TAF14 (TBP-associated factor 14)  note TBP-associated factor 14 (TAF14); INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: YEATS (InterPro:IPR005033); BEST Arabidopsis thaliana protein match is: GAS41; protein binding (TAIR:AT5G45600.1); Has 583 Blast hits to 583 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 303; Fungi - 178; Plants - 28; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT2G18000.1p  transcript_id AT2G18000.1  protein_id AT2G18000.1p  transcript_id AT2G18000.1  
At2g18010	chr2:007833902	0.0	W/7833902-7834240	AT2G18010.1  CDS  gene_syn T27K22.12, T27K22_12  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; EXPRESSED IN: sepal, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT4G36110.1); Has 687 Blast hits to 675 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 686; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G18010.1p  transcript_id AT2G18010.1  protein_id AT2G18010.1p  transcript_id AT2G18010.1  
At2g18020	chr2:007837151	0.0	W/7837151-7837590,7837824-7838160	AT2G18020.1  CDS  gene_syn EMB2296, T27K22.11, T27K22_11, embryo defective 2296  gene EMB2296  go_component nucleolus|GO:0005730|15496452|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function structural constituent of ribosome|GO:0003735||ISS  product EMB2296 (embryo defective 2296); structural constituent of ribosome  note embryo defective 2296 (EMB2296); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: embryonic development ending in seed dormancy, translation; LOCATED IN: in 7 components; EXPRESSED IN: male gametophyte, guard cell, cultured cell; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein L2, domain 3 (InterPro:IPR014726), Ribosomal protein L2 (InterPro:IPR002171); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L8 (RPL8C) (TAIR:AT4G36130.1); Has 7419 Blast hits to 7417 proteins in 2201 species: Archae - 236; Bacteria - 3117; Metazoa - 334; Fungi - 188; Plants - 928; Viruses - 0; Other Eukaryotes - 2616 (source: NCBI BLink).  protein_id AT2G18020.1p  transcript_id AT2G18020.1  protein_id AT2G18020.1p  transcript_id AT2G18020.1  
At2g18030	chr2:007840207	0.0	W/7840207-7840515,7840852-7840964,7841050-7841194,7841299-7841496	AT2G18030.1  CDS  gene_syn T27K22.10, T27K22_10  go_component endomembrane system|GO:0012505||IEA  go_process protein metabolic process|GO:0019538||IEA  go_function oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor|GO:0016671||IEA  go_process protein modification process|GO:0006464||ISS  go_function peptide-methionine-(S)-S-oxide reductase activity|GO:0008113||ISS  product peptide methionine sulfoxide reductase family protein  note peptide methionine sulfoxide reductase family protein; FUNCTIONS IN: peptide-methionine-(S)-S-oxide reductase activity, oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: protein modification process, protein metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methionine sulphoxide reductase A (InterPro:IPR002569); BEST Arabidopsis thaliana protein match is: PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1); oxidoreductase, acting on sulfur group of donors, disulfide as acceptor / peptide-methionine-(S)-S-oxide reductase (TAIR:AT5G61640.1); Has 6953 Blast hits to 6951 proteins in 1351 species: Archae - 86; Bacteria - 3303; Metazoa - 164; Fungi - 90; Plants - 126; Viruses - 1; Other Eukaryotes - 3183 (source: NCBI BLink).  protein_id AT2G18030.1p  transcript_id AT2G18030.1  protein_id AT2G18030.1p  transcript_id AT2G18030.1  
At2g18030	chr2:007840207	0.0	W/7840207-7840515,7840852-7840964,7841050-7841206	AT2G18030.2  CDS  gene_syn T27K22.10, T27K22_10  go_component endomembrane system|GO:0012505||IEA  go_process protein metabolic process|GO:0019538||IEA  go_function oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor|GO:0016671||IEA  go_process protein modification process|GO:0006464||ISS  go_function peptide-methionine-(S)-S-oxide reductase activity|GO:0008113||ISS  product peptide methionine sulfoxide reductase family protein  note peptide methionine sulfoxide reductase family protein; FUNCTIONS IN: peptide-methionine-(S)-S-oxide reductase activity, oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: protein modification process, protein metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methionine sulphoxide reductase A (InterPro:IPR002569); BEST Arabidopsis thaliana protein match is: PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1); oxidoreductase, acting on sulfur group of donors, disulfide as acceptor / peptide-methionine-(S)-S-oxide reductase (TAIR:AT5G61640.1); Has 6930 Blast hits to 6928 proteins in 1349 species: Archae - 86; Bacteria - 3298; Metazoa - 164; Fungi - 90; Plants - 124; Viruses - 1; Other Eukaryotes - 3167 (source: NCBI BLink).  protein_id AT2G18030.2p  transcript_id AT2G18030.2  protein_id AT2G18030.2p  transcript_id AT2G18030.2  
At2g18040	chr2:007842346	0.0	W/7842346-7842580,7843413-7843537	AT2G18040.1  CDS  gene_syn PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1, PIN1AT, PROLYL CIS/TRANS ISOMERASE, T27K22.9, T27K22_9  gene PIN1AT  function phosphorylation-specific peptidyl prolyl cis/trans isomerase (PPIase) with specificity for phosphoserine-proline bonds  go_component plasma membrane|GO:0005886|17317660|IDA  go_process regulation of cell cycle|GO:0051726|11118438|TAS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755|11118438|IGI  product PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1); peptidyl-prolyl cis-trans isomerase  note PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1 (PIN1AT); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, PpiC-type (InterPro:IPR000297); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerase PPIC-type family protein (TAIR:AT1G26550.1); Has 4049 Blast hits to 3985 proteins in 995 species: Archae - 12; Bacteria - 2741; Metazoa - 194; Fungi - 98; Plants - 82; Viruses - 0; Other Eukaryotes - 922 (source: NCBI BLink).  protein_id AT2G18040.1p  transcript_id AT2G18040.1  protein_id AT2G18040.1p  transcript_id AT2G18040.1  
At2g18042	chr2:007844447	0.0	W/7844447-7844815	AT2G18042.1  pseudogenic_transcript  pseudo  function Encodes a ECA1 gametogenesis related family protein [pseudogene]  
At2g18050	chr2:007846095	0.0	W/7846095-7846181,7846254-7846670	AT2G18050.1  CDS  gene_syn HIS1-3, HISTONE H1-3, T27K22.8, T27K22_8  gene HIS1-3  function encodes a structurally divergent linker histone whose gene expression is induced by dehydration and ABA.  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_component nucleosome|GO:0000786||ISS  go_process nucleosome assembly|GO:0006334||ISS  go_process response to water deprivation|GO:0009414|18552355|IEP  go_process response to water deprivation|GO:0009414|9247544|IEP  go_process response to abscisic acid stimulus|GO:0009737|9247544|IEP  go_function DNA binding|GO:0003677||ISS  go_function nucleosomal DNA binding|GO:0031492|9247544|ISS  product HIS1-3 (HISTONE H1-3); DNA binding / nucleosomal DNA binding  note HISTONE H1-3 (HIS1-3); FUNCTIONS IN: DNA binding, nucleosomal DNA binding; INVOLVED IN: response to water deprivation, response to abscisic acid stimulus, nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Histone H5 (InterPro:IPR005819), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: histone H1.2 (TAIR:AT2G30620.1); Has 1742 Blast hits to 1521 proteins in 202 species: Archae - 1; Bacteria - 8; Metazoa - 1017; Fungi - 56; Plants - 396; Viruses - 0; Other Eukaryotes - 264 (source: NCBI BLink).  protein_id AT2G18050.1p  transcript_id AT2G18050.1  protein_id AT2G18050.1p  transcript_id AT2G18050.1  
At2g18050	chr2:007846254	0.0	W/7846254-7846670	AT2G18050.2  CDS  gene_syn HIS1-3, HISTONE H1-3, T27K22.8, T27K22_8  gene HIS1-3  function encodes a structurally divergent linker histone whose gene expression is induced by dehydration and ABA.  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_component nucleosome|GO:0000786||ISS  go_process nucleosome assembly|GO:0006334||ISS  go_process response to water deprivation|GO:0009414|18552355|IEP  go_process response to water deprivation|GO:0009414|9247544|IEP  go_process response to abscisic acid stimulus|GO:0009737|9247544|IEP  go_function DNA binding|GO:0003677||ISS  go_function nucleosomal DNA binding|GO:0031492|9247544|ISS  product HIS1-3 (HISTONE H1-3); DNA binding / nucleosomal DNA binding  note HISTONE H1-3 (HIS1-3); FUNCTIONS IN: DNA binding, nucleosomal DNA binding; INVOLVED IN: response to water deprivation, response to abscisic acid stimulus, nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: histone H1.2 (TAIR:AT2G30620.1); Has 1255 Blast hits to 1026 proteins in 154 species: Archae - 0; Bacteria - 4; Metazoa - 659; Fungi - 27; Plants - 368; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink).  protein_id AT2G18050.2p  transcript_id AT2G18050.2  protein_id AT2G18050.2p  transcript_id AT2G18050.2  
At2g18060	chr2:007850138	0.0	C/7850138-7850303,7849787-7850058,7848399-7849058	AT2G18060.1  CDS  gene_syn ANAC037, T27K22.7, T27K22_7, VASCULAR RELATED NAC-DOMAIN PROTEIN 1, VND1  gene VND1  function Encodes a NAC-domain transcription factor. Expressed in the vascular tissue.  go_component cellular_component|GO:0005575||ND  go_process response to chitin|GO:0010200|17722694|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product VND1 (VASCULAR RELATED NAC-DOMAIN PROTEIN 1); transcription factor  note VASCULAR RELATED NAC-DOMAIN PROTEIN 1 (VND1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to chitin, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC076 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 76); transcription factor (TAIR:AT4G36160.1); Has 1612 Blast hits to 1610 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1612; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G18060.1p  transcript_id AT2G18060.1  protein_id AT2G18060.1p  transcript_id AT2G18060.1  
At2g18070	chr2:007852529	0.0	W/7852529-7852839,7853211-7853245,7853427-7853492,7853608-7853666	AT2G18070.1  CDS  gene_syn T27K22.6, T27K22_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 10 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G18070.1p  transcript_id AT2G18070.1  protein_id AT2G18070.1p  transcript_id AT2G18070.1  
At2g18080	chr2:007857198	0.0	W/7857198-7857377,7857480-7857605,7857675-7857830,7857944-7858132,7858290-7858406,7858480-7858533,7858621-7858692,7858801-7859006,7859085-7859179,7859260-7859334,7859442-7859525,7859600-7859715	AT2G18080.1  CDS  gene_syn EDA2, T27K22.5, T27K22_5, embryo sac development arrest 2  gene EDA2  go_component endomembrane system|GO:0012505||IEA  go_function serine-type peptidase activity|GO:0008236||IEA  go_process proteolysis|GO:0006508||ISS  go_process megagametogenesis|GO:0009561|15634699|IMP  go_function serine-type peptidase activity|GO:0008236||ISS  product EDA2 (embryo sac development arrest 2); serine-type peptidase  note embryo sac development arrest 2 (EDA2); FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis, megagametogenesis; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Peptidase S28 (InterPro:IPR008758); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase S28 family protein (TAIR:AT4G36195.1); Has 893 Blast hits to 862 proteins in 112 species: Archae - 0; Bacteria - 6; Metazoa - 511; Fungi - 137; Plants - 100; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).  protein_id AT2G18080.1p  transcript_id AT2G18080.1  protein_id AT2G18080.1p  transcript_id AT2G18080.1  
At2g18090	chr2:007864501	0.0	W/7864501-7864790,7864904-7864983,7865060-7865247,7865401-7867317	AT2G18090.1  CDS  gene_syn T27K22.4, T27K22_4  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein  note PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein; FUNCTIONS IN: protein binding, DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 (InterPro:IPR003121), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), GYF (InterPro:IPR003169); BEST Arabidopsis thaliana protein match is: DNA binding / nucleic acid binding / protein binding / zinc ion binding (TAIR:AT3G51120.1); Has 879 Blast hits to 782 proteins in 136 species: Archae - 0; Bacteria - 105; Metazoa - 439; Fungi - 39; Plants - 214; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT2G18090.1p  transcript_id AT2G18090.1  protein_id AT2G18090.1p  transcript_id AT2G18090.1  
At2g18100	chr2:007867929	0.0	W/7867929-7868149,7868243-7868324,7868414-7868899,7869082-7869250,7869362-7869514,7869630-7869727,7869821-7869912,7869993-7870063,7870165-7870300,7870401-7870460,7870574-7870656,7870734-7870810,7870933-7871003,7871080-7871137,7871224-7871337	AT2G18100.1  CDS  gene_syn T27K22.3, T27K22_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF726 (InterPro:IPR007941); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G36210.3); Has 430 Blast hits to 403 proteins in 149 species: Archae - 8; Bacteria - 55; Metazoa - 85; Fungi - 155; Plants - 40; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).  protein_id AT2G18100.1p  transcript_id AT2G18100.1  protein_id AT2G18100.1p  transcript_id AT2G18100.1  
At2g18110	chr2:007872636	0.0	W/7872636-7872718,7872823-7872939,7873023-7873240,7873330-7873605,7873712-7873713	AT2G18110.1  CDS  gene_syn T27K22.2, T27K22_2  go_component eukaryotic translation elongation factor 1 complex|GO:0005853||IEA  go_process translational elongation|GO:0006414||IEA  go_function translation elongation factor activity|GO:0003746||IEA  go_component eukaryotic translation elongation factor 1 complex|GO:0005853||ISS  go_process translational elongation|GO:0006414||ISS  go_function translation elongation factor activity|GO:0003746||ISS  product elongation factor 1-beta, putative / EF-1-beta, putative  note elongation factor 1-beta, putative / EF-1-beta, putative; FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: eukaryotic translation elongation factor 1 complex; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Translation elongation factor EF1B/ribosomal protein S6 (InterPro:IPR014717), Translation elongation factor EF1B, beta and delta chains, guanine nucleotide exchange (InterPro:IPR014038), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Translation elongation factor EF1B, beta/delta chains, conserved site (InterPro:IPR001326); BEST Arabidopsis thaliana protein match is: elongation factor 1-beta / EF-1-beta (TAIR:AT1G30230.2); Has 761 Blast hits to 761 proteins in 204 species: Archae - 0; Bacteria - 2; Metazoa - 412; Fungi - 112; Plants - 109; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink).  protein_id AT2G18110.1p  transcript_id AT2G18110.1  protein_id AT2G18110.1p  transcript_id AT2G18110.1  
At2g18115	chr2:007874137	0.0	W/7874137-7875027	AT2G18115.1  pseudogenic_transcript  pseudo  gene_syn T27K22.1, T27K22_1  note pseudogene, glycine-rich protein, predicted proteins, Arabidopsis thaliana  
At2g18120	chr2:007877234	0.0	C/7877234-7877681,7876722-7876942	AT2G18120.1  CDS  gene_syn F8D23.10, F8D23_10, SHI-RELATED SEQUENCE 4, SRS4  gene SRS4  function A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SRS4 (SHI-RELATED SEQUENCE 4)  note SHI-RELATED SEQUENCE 4 (SRS4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: STY2 (STYLISH 2); transcription factor (TAIR:AT4G36260.1); Has 82 Blast hits to 82 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G18120.1p  transcript_id AT2G18120.1  protein_id AT2G18120.1p  transcript_id AT2G18120.1  
At2g18130	chr2:007883768	0.0	C/7883768-7883935,7881352-7881561,7881201-7881253,7880234-7880459,7880025-7880163,7879600-7879942,7879308-7879494	AT2G18130.1  CDS  gene_syn ATPAP11, F8D23.9, F8D23_9, PAP11, PURPLE ACID PHOSPHATASE 11  gene PAP11  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function acid phosphatase activity|GO:0003993|12021284|ISS  go_function acid phosphatase activity|GO:0003993|16244908|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PAP11 (PURPLE ACID PHOSPHATASE 11); acid phosphatase/ protein serine/threonine phosphatase  note PURPLE ACID PHOSPHATASE 11 (PAP11); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: PAP5 (PURPLE ACID PHOSPHATASE 5); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT1G52940.1); Has 1091 Blast hits to 1080 proteins in 235 species: Archae - 2; Bacteria - 259; Metazoa - 165; Fungi - 62; Plants - 443; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).  protein_id AT2G18130.1p  transcript_id AT2G18130.1  protein_id AT2G18130.1p  transcript_id AT2G18130.1  
At2g18140	chr2:007888639	0.0	C/7888639-7888878,7888353-7888544,7888109-7888274,7887584-7887999	AT2G18140.1  CDS  gene_syn F8D23.8, F8D23_8  go_component cell wall|GO:0005618|14595688|IDA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: cell wall; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT2G18150.1); Has 3110 Blast hits to 3091 proteins in 236 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 245; Plants - 2816; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT2G18140.1p  transcript_id AT2G18140.1  protein_id AT2G18140.1p  transcript_id AT2G18140.1  
At2g18150	chr2:007893344	0.0	C/7893344-7893586,7893057-7893248,7892812-7892977,7892298-7892713	AT2G18150.1  CDS  gene_syn F8D23.7, F8D23_7  go_component cell wall|GO:0005618|14595688|IDA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process response to nematode|GO:0009624||ISS  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, response to nematode; LOCATED IN: cell wall; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT2G18140.1); Has 3070 Blast hits to 3052 proteins in 222 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 205; Plants - 2818; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT2G18150.1p  transcript_id AT2G18150.1  protein_id AT2G18150.1p  transcript_id AT2G18150.1  
At2g18160	chr2:007898288	0.0	C/7898288-7898803	AT2G18160.1  CDS  gene_syn ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 2, ATBZIP2, F8D23.6, F8D23_6, G-BOX BINDING FACTOR 5, GBF5, TRANSCRIPTION FACTOR GBF5  gene ATBZIP2  function Encodes a b-ZIP transcription factor.  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function protein heterodimerization activity|GO:0046982|16709202|IPI  product ATBZIP2 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 2); DNA binding / protein heterodimerization/ transcription factor  note ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 2 (ATBZIP2); FUNCTIONS IN: transcription factor activity, protein heterodimerization activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: AtbZIP44 (Arabidopsis thaliana basic leucine-zipper 44); DNA binding / protein heterodimerization/ transcription factor (TAIR:AT1G75390.1); Has 1234 Blast hits to 1234 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 9; Plants - 1164; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT2G18160.1p  transcript_id AT2G18160.1  protein_id AT2G18160.1p  transcript_id AT2G18160.1  
At2g18162	chr2:007898917	0.0	C/7898917-7899042	AT2G18162.1  CDS  gene_syn CPuORF1, Conserved peptide upstream open reading frame 1  gene CPuORF1  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF1 represents a conserved upstream opening reading frame relative to major ORF AT2G18160.1  go_component endomembrane system|GO:0012505||IEA  product CPuORF1 (Conserved peptide upstream open reading frame 1)  note Conserved peptide upstream open reading frame 1 (CPuORF1); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: CPuORF5 (Conserved peptide upstream open reading frame 5) (TAIR:AT1G75388.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G18162.1p  transcript_id AT2G18162.1  protein_id AT2G18162.1p  transcript_id AT2G18162.1  
At2g18170	chr2:007908952	0.0	C/7908952-7909374,7908178-7908861	AT2G18170.1  CDS  gene_syn ARABIDOPSIS THALIANA MAP KINASE 7, ATMPK7, F8D23.5, F8D23_5, MAP KINASE 7, MPK7  gene ATMPK7  go_process signal transduction|GO:0007165|12119167|IC  go_process circadian rhythm|GO:0007623|12119167|TAS  go_process response to hydrogen peroxide|GO:0042542|17933903|IDA  go_function MAP kinase activity|GO:0004707|12119167|ISS  go_function MAP kinase activity|GO:0004707|8282107|ISS  go_function kinase activity|GO:0016301||ISS  product ATMPK7 (ARABIDOPSIS THALIANA MAP KINASE 7); MAP kinase/ kinase  note ARABIDOPSIS THALIANA MAP KINASE 7 (ATMPK7); FUNCTIONS IN: MAP kinase activity, kinase activity; INVOLVED IN: signal transduction, response to hydrogen peroxide, circadian rhythm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: ATMPK14 (Mitogen-activated protein kinase 14); MAP kinase/ kinase (TAIR:AT4G36450.1); Has 89108 Blast hits to 87967 proteins in 3221 species: Archae - 44; Bacteria - 6784; Metazoa - 39683; Fungi - 8083; Plants - 17017; Viruses - 439; Other Eukaryotes - 17058 (source: NCBI BLink).  protein_id AT2G18170.1p  transcript_id AT2G18170.1  protein_id AT2G18170.1p  transcript_id AT2G18170.1  
At2g18180	chr2:007913680	0.0	C/7913680-7913695,7913346-7913580,7913173-7913272,7912812-7913078,7912655-7912732,7912459-7912560,7912328-7912377,7912143-7912242,7911894-7912034,7911768-7911828,7911271-7911671,7911054-7911179	AT2G18180.1  CDS  gene_syn F8D23.4, F8D23_4  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative  note SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SFH12 (SEC14-LIKE 12); phosphatidylinositol transporter/ transporter (TAIR:AT4G36490.1); Has 1812 Blast hits to 1800 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 629; Fungi - 399; Plants - 463; Viruses - 0; Other Eukaryotes - 321 (source: NCBI BLink).  protein_id AT2G18180.1p  transcript_id AT2G18180.1  protein_id AT2G18180.1p  transcript_id AT2G18180.1  
At2g18190	chr2:007914886	0.0	C/7914886-7915872,7914305-7914802	AT2G18190.1  CDS  gene_syn F8D23.3, F8D23_3  go_component endomembrane system|GO:0012505||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process response to salt stress|GO:0009651|11351099|IEP  go_function ATP binding|GO:0005524||ISS  go_function ATPase activity|GO:0016887||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT2G18193.1); Has 14361 Blast hits to 13239 proteins in 1612 species: Archae - 766; Bacteria - 4116; Metazoa - 2577; Fungi - 1797; Plants - 1302; Viruses - 30; Other Eukaryotes - 3773 (source: NCBI BLink).  protein_id AT2G18190.1p  transcript_id AT2G18190.1  protein_id AT2G18190.1p  transcript_id AT2G18190.1  
At2g18193	chr2:007918210	0.0	C/7918210-7919184,7917621-7918133	AT2G18193.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATP binding|GO:0005524||ISS  go_function ATPase activity|GO:0016887||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT2G18190.1); Has 15970 Blast hits to 14789 proteins in 1627 species: Archae - 790; Bacteria - 4301; Metazoa - 3207; Fungi - 2071; Plants - 1436; Viruses - 30; Other Eukaryotes - 4135 (source: NCBI BLink).  protein_id AT2G18193.1p  transcript_id AT2G18193.1  protein_id AT2G18193.1p  transcript_id AT2G18193.1  
At2g18196	chr2:007922131	0.0	C/7922131-7922268,7921360-7921435,7920793-7921115	AT2G18196.1  CDS  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product metal ion binding  note metal ion binding; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: metal ion binding (TAIR:AT4G10465.1); Has 600 Blast hits to 600 proteins in 43 species: Archae - 0; Bacteria - 17; Metazoa - 9; Fungi - 6; Plants - 568; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G18196.1p  transcript_id AT2G18196.1  protein_id AT2G18196.1p  transcript_id AT2G18196.1  
At2g18200	chr2:007924267	0.0	C/7924267-7924572	AT2G18200.1  CDS  gene_syn F8D23.12  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G18210.1); Has 13 Blast hits to 13 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G18200.1p  transcript_id AT2G18200.1  protein_id AT2G18200.1p  transcript_id AT2G18200.1  
At2g18210	chr2:007925392	0.0	C/7925392-7925766	AT2G18210.1  CDS  gene_syn F8D23.2  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: cotyledon, hypocotyl, root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G36500.1); Has 24 Blast hits to 24 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G18210.1p  transcript_id AT2G18210.1  protein_id AT2G18210.1p  transcript_id AT2G18210.1  
At2g18220	chr2:007928254	0.0	W/7928254-7928266,7928308-7928546,7928647-7928718,7928809-7929363,7929452-7929754,7929856-7930185,7930280-7930486,7930608-7930694,7930917-7931011,7931099-7931230,7931545-7931851	AT2G18220.1  CDS  gene_syn T30D6.27, T30D6_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0120 (InterPro:IPR005343); BEST Arabidopsis thaliana protein match is: RBL (REBELOTE) (TAIR:AT3G55510.1); Has 4846 Blast hits to 3236 proteins in 249 species: Archae - 2; Bacteria - 127; Metazoa - 2049; Fungi - 594; Plants - 200; Viruses - 69; Other Eukaryotes - 1805 (source: NCBI BLink).  protein_id AT2G18220.1p  transcript_id AT2G18220.1  protein_id AT2G18220.1p  transcript_id AT2G18220.1  
At2g18230	chr2:007933419	0.0	C/7933419-7933560,7933300-7933328,7933136-7933201,7932806-7932913,7932646-7932711,7932436-7932556,7932263-7932344,7932139-7932181	AT2G18230.1  CDS  gene_syn Arabidopsis thaliana pyrophosphorylase 2, AtPPa2, T30D6.26, T30D6_26  gene AtPPa2  function Encodes a protein that might have inorganic pyrophosphatase activity.  go_component cytoplasm|GO:0005737||IEA  go_process phosphate metabolic process|GO:0006796||IEA  go_component membrane|GO:0016020||ISS  go_process metabolic process|GO:0008152||ISS  go_function inorganic diphosphatase activity|GO:0004427|15135060|NAS  go_function pyrophosphatase activity|GO:0016462||ISS  product AtPPa2 (Arabidopsis thaliana pyrophosphorylase 2); inorganic diphosphatase/ pyrophosphatase  note Arabidopsis thaliana pyrophosphorylase 2 (AtPPa2); FUNCTIONS IN: inorganic diphosphatase activity, pyrophosphatase activity; INVOLVED IN: phosphate metabolic process, metabolic process; LOCATED IN: membrane, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inorganic pyrophosphatase (InterPro:IPR008162); BEST Arabidopsis thaliana protein match is: AtPPa4 (Arabidopsis thaliana pyrophosphorylase 4); inorganic diphosphatase (TAIR:AT3G53620.1); Has 4127 Blast hits to 4127 proteins in 1143 species: Archae - 108; Bacteria - 2768; Metazoa - 198; Fungi - 188; Plants - 179; Viruses - 0; Other Eukaryotes - 686 (source: NCBI BLink).  protein_id AT2G18230.1p  transcript_id AT2G18230.1  protein_id AT2G18230.1p  transcript_id AT2G18230.1  
At2g18240	chr2:007935466	0.0	W/7935466-7935827,7936051-7936285,7936396-7936464	AT2G18240.1  CDS  go_component integral to membrane|GO:0016021||IEA  go_component integral to membrane|GO:0016021||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product RER1 protein, putative  note RER1 protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Retrieval of early ER protein Rer1 (InterPro:IPR004932); BEST Arabidopsis thaliana protein match is: ATRER1B (TAIR:AT2G21600.1); Has 363 Blast hits to 362 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 100; Plants - 76; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT2G18240.1p  transcript_id AT2G18240.1  protein_id AT2G18240.1p  transcript_id AT2G18240.1  
At2g18240	chr2:007935466	0.0	W/7935466-7935827,7936051-7936285,7936399-7936464	AT2G18240.2  CDS  go_component integral to membrane|GO:0016021||IEA  go_component integral to membrane|GO:0016021||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product RER1 protein, putative  note RER1 protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Retrieval of early ER protein Rer1 (InterPro:IPR004932); BEST Arabidopsis thaliana protein match is: ATRER1B (TAIR:AT2G21600.1); Has 363 Blast hits to 362 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 100; Plants - 76; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT2G18240.2p  transcript_id AT2G18240.2  protein_id AT2G18240.2p  transcript_id AT2G18240.2  
At2g18245	chr2:007937353	0.0	W/7937353-7937981,7938100-7938202,7938831-7939024,7939112-7939382	AT2G18245.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF829, eukaryotic (InterPro:IPR008547); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19970.1); Has 206 Blast hits to 205 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 147; Fungi - 11; Plants - 34; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT2G18245.1p  transcript_id AT2G18245.1  protein_id AT2G18245.1p  transcript_id AT2G18245.1  
At2g18250	chr2:007940025	0.0	W/7940025-7940132,7940234-7940305,7940825-7940884,7941013-7941107,7941201-7941270,7941374-7941499	AT2G18250.1  CDS  gene_syn 4-phosphopantetheine adenylyltransferase, ATCOAD, T30D6.24, T30D6_24  gene ATCOAD  function At2g18250 encodes pantetheine-phosphate adenylyltransferase catalyzing the formation of dephospho-CoA from pantetheine 4 -phosphate. The enzyme is involved in coenzyme A biosynthesis.  go_process lipid metabolic process|GO:0006629|18621975|IMP  go_process response to osmotic stress|GO:0006970|18621975|IMP  go_process biosynthetic process|GO:0009058||ISS  go_process response to salt stress|GO:0009651|18621975|IMP  go_process coenzyme A biosynthetic process|GO:0015937|12860978|IDA  go_process lipid storage|GO:0019915|18621975|IMP  go_process growth|GO:0040007|18621975|IMP  go_process regulation of coenzyme A biosynthetic process|GO:0080020|18621975|IMP  go_function pantetheine-phosphate adenylyltransferase activity|GO:0004595|12860978|IDA  go_function pantetheine-phosphate adenylyltransferase activity|GO:0004595|18621975|IDA  go_function nucleotidyltransferase activity|GO:0016779||ISS  product ATCOAD (4-phosphopantetheine adenylyltransferase); nucleotidyltransferase/ pantetheine-phosphate adenylyltransferase  note 4-phosphopantetheine adenylyltransferase (ATCOAD); FUNCTIONS IN: pantetheine-phosphate adenylyltransferase activity, nucleotidyltransferase activity; INVOLVED IN: in 8 processes; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Dephospho-CoA kinase (InterPro:IPR001977), Cytidyltransferase-related (InterPro:IPR004821), Cytidylyltransferase (InterPro:IPR004820); Has 464 Blast hits to 462 proteins in 197 species: Archae - 124; Bacteria - 2; Metazoa - 110; Fungi - 84; Plants - 27; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT2G18250.1p  transcript_id AT2G18250.1  protein_id AT2G18250.1p  transcript_id AT2G18250.1  
At2g18260	chr2:007942275	0.0	W/7942275-7943192	AT2G18260.1  CDS  gene_syn ATSYP112, SYNTAXIN OF PLANTS 112, SYP112, T30D6.23, T30D6_23  gene SYP112  function member of SYP11 Gene Family  go_component nucleus|GO:0005634|14617066|IDA  go_process intracellular protein transport|GO:0006886|11115874|TAS  go_process membrane fusion|GO:0006944|11115874|TAS  go_process response to cold|GO:0009409|14617066|IEP  go_function SNAP receptor activity|GO:0005484|11115874|TAS  product SYP112 (SYNTAXIN OF PLANTS 112); SNAP receptor  note SYNTAXIN OF PLANTS 112 (SYP112); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion, intracellular protein transport, response to cold; LOCATED IN: nucleus; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: SYP111 (SYNTAXIN OF PLANTS 111); SNAP receptor (TAIR:AT1G08560.1); Has 1321 Blast hits to 1320 proteins in 167 species: Archae - 0; Bacteria - 2; Metazoa - 764; Fungi - 155; Plants - 239; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink).  protein_id AT2G18260.1p  transcript_id AT2G18260.1  protein_id AT2G18260.1p  transcript_id AT2G18260.1  
At2g18270	chr2:007946158	0.0	C/7946158-7946406	AT2G18270.1  CDS  gene_syn T30D6.22, T30D6_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, leaf apex, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, petal differentiation and expansion stage; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G18270.1p  transcript_id AT2G18270.1  protein_id AT2G18270.1p  transcript_id AT2G18270.1  
At2g18280	chr2:007946754	0.0	W/7946754-7947086,7947162-7947249,7947333-7947462,7947543-7948176	AT2G18280.1  CDS  gene_syn AtTLP2, T30D6.21, T30D6_21, TUBBY LIKE PROTEIN 2  gene AtTLP2  function Member of TLP family  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function phosphoric diester hydrolase activity|GO:0008081||ISS  product AtTLP2 (TUBBY LIKE PROTEIN 2); phosphoric diester hydrolase/ transcription factor  note TUBBY LIKE PROTEIN 2 (AtTLP2); FUNCTIONS IN: transcription factor activity, phosphoric diester hydrolase activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: AtTLP3 (TUBBY LIKE PROTEIN 3); phosphoric diester hydrolase/ transcription factor (TAIR:AT2G47900.2); Has 680 Blast hits to 676 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 293; Fungi - 2; Plants - 303; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT2G18280.1p  transcript_id AT2G18280.1  protein_id AT2G18280.1p  transcript_id AT2G18280.1  
At2g18280	chr2:007946754	0.0	W/7946754-7947086,7947162-7947249,7947333-7947462,7947543-7948176	AT2G18280.2  CDS  gene_syn AtTLP2, T30D6.21, T30D6_21, TUBBY LIKE PROTEIN 2  gene AtTLP2  function Member of TLP family  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function phosphoric diester hydrolase activity|GO:0008081||ISS  product AtTLP2 (TUBBY LIKE PROTEIN 2); phosphoric diester hydrolase/ transcription factor  note TUBBY LIKE PROTEIN 2 (AtTLP2); FUNCTIONS IN: transcription factor activity, phosphoric diester hydrolase activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: AtTLP3 (TUBBY LIKE PROTEIN 3); phosphoric diester hydrolase/ transcription factor (TAIR:AT2G47900.2); Has 680 Blast hits to 676 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 293; Fungi - 2; Plants - 303; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT2G18280.2p  transcript_id AT2G18280.2  protein_id AT2G18280.2p  transcript_id AT2G18280.2  
At2g18290	chr2:007949918	0.0	C/7949918-7950096,7949757-7949817,7949583-7949675,7949415-7949485,7948678-7948782,7948522-7948591	AT2G18290.1  CDS  gene_syn T30D6.20, T30D6_20  go_component anaphase-promoting complex|GO:0005680||IEA  go_process regulation of mitotic metaphase/anaphase transition|GO:0030071||IEA  go_function protein binding|GO:0005515||IEA  product anaphase-promoting complex, subunit 10 family / APC10 family  note anaphase-promoting complex, subunit 10 family / APC10 family; FUNCTIONS IN: protein binding; INVOLVED IN: regulation of mitotic metaphase/anaphase transition; LOCATED IN: anaphase-promoting complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Anaphase-promoting complex, subunit 10 (InterPro:IPR004939), Anaphase-promoting complex, subunit 10, subgroup (InterPro:IPR016901), Galactose-binding like (InterPro:IPR008979); Has 415 Blast hits to 415 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 248; Fungi - 90; Plants - 23; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT2G18290.1p  transcript_id AT2G18290.1  protein_id AT2G18290.1p  transcript_id AT2G18290.1  
At2g18300	chr2:007954063	0.0	C/7954063-7954446,7953766-7953984,7953553-7953687,7953392-7953463,7953182-7953310,7953022-7953090	AT2G18300.1  CDS  gene_syn T30D6.19, T30D6_19  go_component nucleus|GO:0005634||IEA  go_process response to cytokinin stimulus|GO:0009735|16212609|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to cytokinin stimulus, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BEE2 (BR Enhanced Expression 2); DNA binding / transcription factor (TAIR:AT4G36540.2); Has 1158 Blast hits to 1158 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 61; Fungi - 29; Plants - 1049; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT2G18300.1p  transcript_id AT2G18300.1  protein_id AT2G18300.1p  transcript_id AT2G18300.1  
At2g18300	chr2:007954063	0.0	C/7954063-7954446,7953766-7953984,7953553-7953687,7953392-7953463,7953182-7953316,7953022-7953090	AT2G18300.2  CDS  gene_syn T30D6.19, T30D6_19  go_component nucleus|GO:0005634||IEA  go_process response to cytokinin stimulus|GO:0009735|16212609|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to cytokinin stimulus, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BEE2 (BR Enhanced Expression 2); DNA binding / transcription factor (TAIR:AT4G36540.1); Has 1167 Blast hits to 1167 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 59; Fungi - 32; Plants - 1058; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT2G18300.2p  transcript_id AT2G18300.2  protein_id AT2G18300.2p  transcript_id AT2G18300.2  
At2g18310	chr2:007955677	0.0	C/7955677-7955750	AT2G18310.1  tRNA  gene_syn 49292.TRNA-ASN-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asn (anticodon: GTT)  transcript_id AT2G18310.1  
At2g18320	chr2:007956220	0.0	W/7956220-7956309,7956628-7956663,7957337-7957531	AT2G18320.1  CDS  gene_syn T30D6.17, T30D6_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated (InterPro:IPR006527); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G19880.1); Has 127 Blast hits to 122 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G18320.1p  transcript_id AT2G18320.1  protein_id AT2G18320.1p  transcript_id AT2G18320.1  
At2g18323	chr2:007960352	0.0	W/7960352-7960564	AT2G18323.1  pseudogenic_transcript  pseudo  function Pseudogene of ATMG00450  
At2g18328	chr2:007964478	0.0	W/7964478-7964711	AT2G18328.1  CDS  gene_syn ARABIDOPSIS RAD-LIKE 4, ATRL4  gene ATRL4  go_function DNA binding|GO:0003677||IEA  product ATRL4 (ARABIDOPSIS RAD-LIKE 4); DNA binding  note ARABIDOPSIS RAD-LIKE 4 (ATRL4); FUNCTIONS IN: DNA binding; EXPRESSED IN: rosette leaf; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SANT, eukarya (InterPro:IPR017884); BEST Arabidopsis thaliana protein match is: ATRL1 (ARABIDOPSIS RAD-LIKE 1); DNA binding / transcription factor (TAIR:AT4G39250.1); Has 375 Blast hits to 375 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 99; Fungi - 0; Plants - 273; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G18328.1p  transcript_id AT2G18328.1  protein_id AT2G18328.1p  transcript_id AT2G18328.1  
At2g18330	chr2:007965829	0.0	W/7965829-7966113,7966208-7966303,7966569-7966679,7966779-7967088,7967332-7967422,7967541-7967874,7967990-7968138,7968381-7968915	AT2G18330.1  CDS  gene_syn T30D6.16, T30D6_16  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATPase activity|GO:0016887||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT4G36580.1); Has 37166 Blast hits to 28231 proteins in 1893 species: Archae - 831; Bacteria - 8625; Metazoa - 11080; Fungi - 3568; Plants - 1710; Viruses - 140; Other Eukaryotes - 11212 (source: NCBI BLink).  protein_id AT2G18330.1p  transcript_id AT2G18330.1  protein_id AT2G18330.1p  transcript_id AT2G18330.1  
At2g18340	chr2:007969400	0.0	W/7969400-7969548,7969804-7971025	AT2G18340.1  CDS  gene_syn T30D6.15, T30D6_15  go_component endomembrane system|GO:0012505||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||ISS  go_function molecular_function|GO:0003674||ND  product late embryogenesis abundant domain-containing protein / LEA domain-containing protein  note late embryogenesis abundant domain-containing protein / LEA domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, leaf whorl, petal, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein (InterPro:IPR004238); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G36600.1); Has 5664 Blast hits to 1759 proteins in 453 species: Archae - 19; Bacteria - 1853; Metazoa - 665; Fungi - 305; Plants - 1814; Viruses - 35; Other Eukaryotes - 973 (source: NCBI BLink).  protein_id AT2G18340.1p  transcript_id AT2G18340.1  protein_id AT2G18340.1p  transcript_id AT2G18340.1  
At2g18350	chr2:007971122	0.0	C/7971122-7971910	AT2G18350.1  CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 24, AtHB24, T30D6.14, T30D6_14  gene AtHB24  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_function DNA binding|GO:0003677|16428600|ISS  go_function transcription factor activity|GO:0003700||ISS  product AtHB24 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 24); DNA binding / transcription factor  note ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 24 (AtHB24); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein Cys/His-rich dimerisation region (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: AtHB33 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 33); DNA binding / transcription factor (TAIR:AT1G75240.1); Has 258 Blast hits to 249 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 258; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G18350.1p  transcript_id AT2G18350.1  protein_id AT2G18350.1p  transcript_id AT2G18350.1  
At2g18360	chr2:007978741	0.0	C/7978741-7979221,7978282-7978457,7977252-7977341,7977047-7977114,7976848-7976974	AT2G18360.1  CDS  gene_syn T30D6.13, T30D6_13  go_component endomembrane system|GO:0012505||IEA  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, hypocotyl, root, leaf; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT4G36610.1); Has 5983 Blast hits to 5981 proteins in 903 species: Archae - 37; Bacteria - 3607; Metazoa - 418; Fungi - 39; Plants - 245; Viruses - 0; Other Eukaryotes - 1637 (source: NCBI BLink).  protein_id AT2G18360.1p  transcript_id AT2G18360.1  protein_id AT2G18360.1p  transcript_id AT2G18360.1  
At2g18370	chr2:007980687	0.0	W/7980687-7981027,7981466-7981475	AT2G18370.1  CDS  gene_syn T30D6.12, T30D6_12  function Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_function lipid binding|GO:0008289||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, leaf whorl, male gametophyte, hypocotyl, root; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: LTP6; lipid binding (TAIR:AT3G08770.1); Has 812 Blast hits to 811 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 808; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G18370.1p  transcript_id AT2G18370.1  protein_id AT2G18370.1p  transcript_id AT2G18370.1  
At2g18380	chr2:007983679	0.0	C/7983679-7984017,7982868-7983155	AT2G18380.1  CDS  gene_syn T30D6.11, T30D6_11  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: zinc finger (GATA type) family protein (TAIR:AT4G36620.1); Has 1104 Blast hits to 1079 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 120; Fungi - 527; Plants - 395; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT2G18380.1p  transcript_id AT2G18380.1  protein_id AT2G18380.1p  transcript_id AT2G18380.1  
At2g18390	chr2:007988335	0.0	W/7988335-7988399,7988486-7988596,7988710-7988872,7988986-7989066,7989237-7989374	AT2G18390.1  CDS  gene_syn ARF-LIKE 2, ARL2, ATARLC1, HAL, HALLIMASCH, T30D6.10, T30D6_10, TITAN 5, TTN5  gene TTN5  function Encodes a member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. Mutant has abnormal mitosis and cell cycle control during seed development.  go_component intracellular|GO:0005622||IEA  go_process microtubule cytoskeleton organization|GO:0000226|11959844|TAS  go_process tubulin complex assembly|GO:0007021|11959844|ISS  go_process cellularization of the embryo sac|GO:0009558|10948257|IMP  go_process gravitropism|GO:0009630||NAS  go_process embryonic development ending in seed dormancy|GO:0009793|10948257|IMP  go_process endosperm development|GO:0009960|10948257|IMP  go_function GTPase activity|GO:0003924|10948257|ISS  go_function GTP binding|GO:0005525|10948257|ISS  go_function GTP binding|GO:0005525|12644670|ISS  product TTN5 (TITAN 5); GTP binding / GTPase  note TITAN 5 (TTN5); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: in 6 processes; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), GTP-binding protein SAR1 (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ATARFA1B (ADP-ribosylation factor A1B); GTP binding / phospholipase activator/ protein binding (TAIR:AT5G14670.1); Has 7807 Blast hits to 7801 proteins in 325 species: Archae - 9; Bacteria - 27; Metazoa - 3820; Fungi - 1103; Plants - 928; Viruses - 3; Other Eukaryotes - 1917 (source: NCBI BLink).  protein_id AT2G18390.1p  transcript_id AT2G18390.1  protein_id AT2G18390.1p  transcript_id AT2G18390.1  
At2g18400	chr2:007989665	0.0	C/7989665-7989973	AT2G18400.1  CDS  gene_syn T30D6.9, T30D6_9  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L6 family protein  note ribosomal protein L6 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L6 (InterPro:IPR000702), Ribosomal protein L6, conserved site-1 (InterPro:IPR002358); BEST Arabidopsis thaliana protein match is: emb2394 (embryo defective 2394); structural constituent of ribosome (TAIR:AT1G05190.1); Has 5053 Blast hits to 5053 proteins in 1481 species: Archae - 1; Bacteria - 2961; Metazoa - 3; Fungi - 77; Plants - 71; Viruses - 0; Other Eukaryotes - 1940 (source: NCBI BLink).  protein_id AT2G18400.1p  transcript_id AT2G18400.1  protein_id AT2G18400.1p  transcript_id AT2G18400.1  
At2g18410	chr2:007990768	0.0	W/7990768-7990934,7991024-7991116,7991219-7991367,7991454-7991500,7991575-7991644,7991732-7991958,7992036-7992131,7992241-7992316,7992389-7992588	AT2G18410.1  CDS  gene_syn T30D6.8, T30D6_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 39 Blast hits to 39 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 2; Plants - 14; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G18410.1p  transcript_id AT2G18410.1  protein_id AT2G18410.1p  transcript_id AT2G18410.1  
At2g18410	chr2:007990768	0.0	W/7990768-7990934,7991024-7991116,7991219-7991367,7991454-7991500,7991575-7991644,7991732-7991958,7992036-7992203	AT2G18410.2  CDS  gene_syn T30D6.8, T30D6_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 17 Blast hits to 17 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G18410.2p  transcript_id AT2G18410.2  protein_id AT2G18410.2p  transcript_id AT2G18410.2  
At2g18420	chr2:007993861	0.0	W/7993861-7993938,7994038-7994062,7994153-7994334	AT2G18420.1  CDS  gene_syn T30D6.7, T30D6_7  function Encodes a Gibberellin-regulated GASA/GAST/Snakin family protein  go_component endomembrane system|GO:0012505||IEA  go_process response to gibberellin stimulus|GO:0009739||ISS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to gibberellin stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, embryo, petal, sepal, flower; EXPRESSED DURING: C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: GASA1 (GAST1 PROTEIN HOMOLOG 1) (TAIR:AT1G75750.1); Has 250 Blast hits to 250 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 250; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G18420.1p  transcript_id AT2G18420.1  protein_id AT2G18420.1p  transcript_id AT2G18420.1  
At2g18440	chr2:007995729	0.0	C/7995729-7997198	AT2G18440.1  ncRNA  gene_syn GENE WITH UNSTABLE TRANSCRIPT 15, GUT15, T30D6.5, T30D6_5  gene GUT15  function Encodes a noncoding RNA, a member of an emerging class of transcripts that lack significant open reading frames and encode RNA as their final product.  go_function molecular_function|GO:0003674||ND  product GUT15 (GENE WITH UNSTABLE TRANSCRIPT 15); other RNA  transcript_id AT2G18440.1  
At2g18450	chr2:008000700	0.0	C/8000700-8000801,8000368-8000535,8000195-8000282,7999929-8000075,7999686-7999826,7999495-7999580,7999248-7999404,7999016-7999159,7998755-7998942,7998494-7998668,7998232-7998402,7998079-7998148,7997875-7997995,7997750-7997787,7997510-7997612	AT2G18450.1  CDS  gene_syn SDH1-2, SUCCINATE DEHYDROGENASE 1-2, T30D6.4, T30D6_4  gene SDH1-2  function Nuclear encoded mitochondrial flavoprotein subunit of succinate dehydrogenase complex .  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|12374303|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial respiratory chain complex II|GO:0005749|12374303|ISS  go_process mitochondrial electron transport, succinate to ubiquinone|GO:0006121|12374303|TAS  go_function succinate dehydrogenase activity|GO:0000104|12374303|TAS  product SDH1-2; succinate dehydrogenase  note SDH1-2; FUNCTIONS IN: succinate dehydrogenase activity; INVOLVED IN: mitochondrial electron transport, succinate to ubiquinone; LOCATED IN: mitochondrial respiratory chain complex II, mitochondrion; EXPRESSED IN: guard cell, root; CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase, flavoprotein subunit (InterPro:IPR011281), Fumarate reductase/succinate dehydrogenase, FAD-binding site (InterPro:IPR003952), Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal (InterPro:IPR015939), Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal (InterPro:IPR003953), Succinate dehydrogenase or fumarate reductase, flavoprotein subunit (InterPro:IPR014006), Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal (InterPro:IPR004112); BEST Arabidopsis thaliana protein match is: SDH1-1; ATP binding / succinate dehydrogenase (TAIR:AT5G66760.1); Has 12456 Blast hits to 12444 proteins in 1490 species: Archae - 167; Bacteria - 5349; Metazoa - 248; Fungi - 245; Plants - 64; Viruses - 0; Other Eukaryotes - 6383 (source: NCBI BLink).  protein_id AT2G18450.1p  transcript_id AT2G18450.1  protein_id AT2G18450.1p  transcript_id AT2G18450.1  
At2g18460	chr2:008001320	0.0	W/8001320-8001448,8001650-8001702,8001844-8001953,8002032-8002199,8002278-8002502,8002593-8002645,8002793-8002810	AT2G18460.2  CDS  gene_syn LCV3, T30D6.3, T30D6_3, like cov 3  gene LCV3  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product LCV3 (like cov 3)  note like cov 3 (LCV3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF502 (InterPro:IPR007462); BEST Arabidopsis thaliana protein match is: LCV1 (LIKE COV 1) (TAIR:AT2G20130.1); Has 1919 Blast hits to 1919 proteins in 363 species: Archae - 4; Bacteria - 686; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 1144 (source: NCBI BLink).  protein_id AT2G18460.2p  transcript_id AT2G18460.2  protein_id AT2G18460.2p  transcript_id AT2G18460.2  
At2g18460	chr2:008001638	0.0	W/8001638-8001702,8001844-8001953,8002032-8002199,8002278-8002502,8002593-8002644,8002833-8002854	AT2G18460.1  CDS  gene_syn LCV3, T30D6.3, T30D6_3, like cov 3  gene LCV3  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product LCV3 (like cov 3)  note like cov 3 (LCV3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF502 (InterPro:IPR007462); BEST Arabidopsis thaliana protein match is: LCV1 (LIKE COV 1) (TAIR:AT2G20130.1); Has 1917 Blast hits to 1917 proteins in 363 species: Archae - 4; Bacteria - 686; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 1143 (source: NCBI BLink).  protein_id AT2G18460.1p  transcript_id AT2G18460.1  protein_id AT2G18460.1p  transcript_id AT2G18460.1  
At2g18465	chr2:008004599	0.0	C/8004599-8004742,8004472-8004504,8004095-8004202,8003904-8004006,8003518-8003812,8003388-8003442,8003223-8003291	AT2G18465.1  CDS  go_function heat shock protein binding|GO:0031072||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G42080.1); Has 685 Blast hits to 685 proteins in 152 species: Archae - 6; Bacteria - 112; Metazoa - 268; Fungi - 15; Plants - 75; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink).  protein_id AT2G18465.1p  transcript_id AT2G18465.1  protein_id AT2G18465.1p  transcript_id AT2G18465.1  
At2g18470	chr2:008007203	0.0	C/8007203-8007767,8006590-8007135,8006415-8006501,8006238-8006308,8006082-8006158,8005840-8005984,8005602-8005763,8005285-8005533	AT2G18470.1  CDS  gene_syn T30D6.2  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function ATP binding|GO:0005524||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATPERK1 (PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1); ATP binding / protein kinase (TAIR:AT3G24550.1); Has 162830 Blast hits to 117421 proteins in 3698 species: Archae - 183; Bacteria - 19798; Metazoa - 67751; Fungi - 16127; Plants - 25417; Viruses - 2578; Other Eukaryotes - 30976 (source: NCBI BLink).  protein_id AT2G18470.1p  transcript_id AT2G18470.1  protein_id AT2G18470.1p  transcript_id AT2G18470.1  
At2g18480	chr2:008011129	0.0	C/8011129-8011243,8009582-8010993	AT2G18480.1  CDS  gene_syn F24H14.17, F24H14_17  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product mannitol transporter, putative  note mannitol transporter, putative; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: mannitol transporter, putative (TAIR:AT4G36670.1); Has 27151 Blast hits to 26702 proteins in 1560 species: Archae - 414; Bacteria - 13025; Metazoa - 4909; Fungi - 5595; Plants - 1549; Viruses - 2; Other Eukaryotes - 1657 (source: NCBI BLink).  protein_id AT2G18480.1p  transcript_id AT2G18480.1  protein_id AT2G18480.1p  transcript_id AT2G18480.1  
At2g18490	chr2:008020668	0.0	W/8020668-8021423	AT2G18490.1  CDS  gene_syn F24H14.16, F24H14_16  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT2G15740.1); Has 16 Blast hits to 16 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G18490.1p  transcript_id AT2G18490.1  protein_id AT2G18490.1p  transcript_id AT2G18490.1  
At2g18500	chr2:008027102	0.0	W/8027102-8028049	AT2G18500.1  CDS  gene_syn ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ATOFP7, F24H14.15, F24H14_15, OFP7  gene OFP7  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  product OFP7 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7)  note ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7 (OFP7); INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: shoot apex, embryo, hypocotyl, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623, plant (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: OFP8 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 8) (TAIR:AT5G19650.1); Has 246 Blast hits to 246 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 242; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G18500.1p  transcript_id AT2G18500.1  protein_id AT2G18500.1p  transcript_id AT2G18500.1  
At2g18510	chr2:008033413	0.0	C/8033413-8033517,8033267-8033315,8033088-8033176,8032942-8032998,8032745-8032807,8032590-8032655,8032365-8032451,8032130-8032223,8031554-8032035	AT2G18510.1  CDS  gene_syn F24H14.14, F24H14_14, emb2444, embryo defective 2444  gene emb2444  go_component nucleolus|GO:0005730|15496452|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function RNA binding|GO:0003723||ISS  product emb2444 (embryo defective 2444); RNA binding / nucleic acid binding / nucleotide binding  note embryo defective 2444 (emb2444); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor (TAIR:AT1G49760.1); Has 56184 Blast hits to 33244 proteins in 1255 species: Archae - 48; Bacteria - 4095; Metazoa - 27429; Fungi - 7959; Plants - 8932; Viruses - 890; Other Eukaryotes - 6831 (source: NCBI BLink).  protein_id AT2G18510.1p  transcript_id AT2G18510.1  protein_id AT2G18510.1p  transcript_id AT2G18510.1  
At2g18520	chr2:008034036	0.0	C/8034036-8035292	AT2G18520.1  CDS  gene_syn F24H14.13, F24H14_13  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G36680.1); Has 11994 Blast hits to 4692 proteins in 136 species: Archae - 1; Bacteria - 2; Metazoa - 90; Fungi - 63; Plants - 11460; Viruses - 0; Other Eukaryotes - 378 (source: NCBI BLink).  protein_id AT2G18520.1p  transcript_id AT2G18520.1  protein_id AT2G18520.1p  transcript_id AT2G18520.1  
At2g18530	chr2:008039670	0.0	W/8039670-8039738,8040101-8040404,8040429-8040530,8040614-8040780	AT2G18530.1  CDS  gene_syn F24H14.12, F24H14_12  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase-related (TAIR:AT3G46160.1); Has 28893 Blast hits to 28828 proteins in 1015 species: Archae - 15; Bacteria - 1959; Metazoa - 13484; Fungi - 3290; Plants - 3865; Viruses - 48; Other Eukaryotes - 6232 (source: NCBI BLink).  protein_id AT2G18530.1p  transcript_id AT2G18530.1  protein_id AT2G18530.1p  transcript_id AT2G18530.1  
At2g18540	chr2:008044714	0.0	C/8044714-8045008,8044164-8044402,8043739-8044068,8042382-8043641	AT2G18540.1  CDS  gene_syn F24H14.11, F24H14_11  go_component endomembrane system|GO:0012505||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process biological_process|GO:0008150||ND  product cupin family protein  note cupin family protein; FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cupin 2, conserved barrel (InterPro:IPR013096), Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cupin family protein (TAIR:AT4G36700.1); Has 678233 Blast hits to 157786 proteins in 3429 species: Archae - 3146; Bacteria - 80235; Metazoa - 322184; Fungi - 66375; Plants - 32685; Viruses - 4402; Other Eukaryotes - 169206 (source: NCBI BLink).  protein_id AT2G18540.1p  transcript_id AT2G18540.1  protein_id AT2G18540.1p  transcript_id AT2G18540.1  
At2g18550	chr2:008051126	0.0	C/8051126-8051213,8050548-8050885,8049663-8049899	AT2G18550.1  CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 21, ATHB21, F24H14.10, F24H14_10, HB-2, HOMEOBOX-2  gene HB-2  function Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product HB-2 (HOMEOBOX-2); DNA binding / transcription factor  note HOMEOBOX-2 (HB-2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40); DNA binding / transcription factor (TAIR:AT4G36740.1); Has 6125 Blast hits to 6122 proteins in 361 species: Archae - 0; Bacteria - 0; Metazoa - 4561; Fungi - 171; Plants - 1317; Viruses - 3; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT2G18550.1p  transcript_id AT2G18550.1  protein_id AT2G18550.1p  transcript_id AT2G18550.1  
At2g18560	chr2:008059696	0.0	W/8059696-8060838	AT2G18560.1  CDS  gene_syn F24H14.9, F24H14_9  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT2G18570.1); Has 4635 Blast hits to 4616 proteins in 264 species: Archae - 0; Bacteria - 90; Metazoa - 1899; Fungi - 13; Plants - 2580; Viruses - 26; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT2G18560.1p  transcript_id AT2G18560.1  protein_id AT2G18560.1p  transcript_id AT2G18560.1  
At2g18570	chr2:008063429	0.0	W/8063429-8064841	AT2G18570.1  CDS  gene_syn F24H14.8, F24H14_8  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT2G18560.1); Has 4606 Blast hits to 4588 proteins in 265 species: Archae - 0; Bacteria - 96; Metazoa - 1851; Fungi - 11; Plants - 2596; Viruses - 29; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT2G18570.1p  transcript_id AT2G18570.1  protein_id AT2G18570.1p  transcript_id AT2G18570.1  
At2g18580	chr2:008065893	0.0	C/8065893-8067109	AT2G18580.1  mRNA_TE_gene  pseudo  gene_syn F24H14.7, F24H14_7  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 3.7e-98 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At2g18590	chr2:008069988	0.0	W/8069988-8069998,8070296-8070593,8071358-8071689,8071788-8071969,8072268-8072866	AT2G18590.1  CDS  gene_syn F24H14.6, F24H14_6  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product carbohydrate transmembrane transporter/ sugar:hydrogen symporter  note carbohydrate transmembrane transporter/ sugar:hydrogen symporter; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: transporter-related (TAIR:AT4G36790.1); Has 5447 Blast hits to 5443 proteins in 897 species: Archae - 110; Bacteria - 3654; Metazoa - 435; Fungi - 274; Plants - 196; Viruses - 2; Other Eukaryotes - 776 (source: NCBI BLink).  protein_id AT2G18590.1p  transcript_id AT2G18590.1  protein_id AT2G18590.1p  transcript_id AT2G18590.1  
At2g18600	chr2:008074451	0.0	C/8074451-8074565,8073943-8074051,8073771-8073849,8073569-8073685,8073337-8073474	AT2G18600.1  CDS  gene_syn F24H14.5, F24H14_5  go_process protein modification process|GO:0006464||IEA  go_process post-translational protein modification|GO:0043687||IEA  go_process regulation of protein metabolic process|GO:0051246||IEA  go_function ATP binding|GO:0005524||IEA  go_function acid-amino acid ligase activity|GO:0016881||IEA  go_function small conjugating protein ligase activity|GO:0019787||IEA  go_component cellular_component|GO:0005575||ND  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function small conjugating protein ligase activity|GO:0019787||ISS  product RUB1-conjugating enzyme, putative  note RUB1-conjugating enzyme, putative; FUNCTIONS IN: ubiquitin-protein ligase activity, small conjugating protein ligase activity, acid-amino acid ligase activity, ATP binding; INVOLVED IN: regulation of protein metabolic process, protein modification process, post-translational protein modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), RUB1 conjugating enzyme Ubc12 (InterPro:IPR015580); BEST Arabidopsis thaliana protein match is: RCE1 (RUB1 CONJUGATING ENZYME 1); NEDD8 ligase/ small conjugating protein ligase (TAIR:AT4G36800.2); Has 6161 Blast hits to 6161 proteins in 297 species: Archae - 0; Bacteria - 0; Metazoa - 3061; Fungi - 1142; Plants - 887; Viruses - 16; Other Eukaryotes - 1055 (source: NCBI BLink).  protein_id AT2G18600.1p  transcript_id AT2G18600.1  protein_id AT2G18600.1p  transcript_id AT2G18600.1  
At2g18610	chr2:008077240	0.0	C/8077240-8077314,8076348-8076533	AT2G18610.1  CDS  gene_syn F24H14.4, F24H14_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G18610.1p  transcript_id AT2G18610.1  protein_id AT2G18610.1p  transcript_id AT2G18610.1  
At2g18620	chr2:008078317	0.0	W/8078317-8079360	AT2G18620.1  CDS  gene_syn F24H14.3, F24H14_3  go_process isoprenoid biosynthetic process|GO:0008299||IEA  product geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative  note geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative; INVOLVED IN: isoprenoid biosynthetic process; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: GGPS1 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1); farnesyltranstransferase (TAIR:AT4G36810.1); Has 11513 Blast hits to 11506 proteins in 1672 species: Archae - 213; Bacteria - 4921; Metazoa - 212; Fungi - 265; Plants - 279; Viruses - 6; Other Eukaryotes - 5617 (source: NCBI BLink).  protein_id AT2G18620.1p  transcript_id AT2G18620.1  protein_id AT2G18620.1p  transcript_id AT2G18620.1  
At2g18630	chr2:008081154	0.0	W/8081154-8082319,8082481-8082496	AT2G18630.1  CDS  gene_syn F24H14.1  go_component peroxisome|GO:0005777|12154131|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cytoplasm|GO:0005737||ISS  go_component plasma membrane|GO:0005886||ISS  product unknown protein  note unknown protein; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane, peroxisome, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66675.1); Has 156 Blast hits to 156 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 13; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT2G18630.1p  transcript_id AT2G18630.1  protein_id AT2G18630.1p  transcript_id AT2G18630.1  
At2g18640	chr2:008083754	0.0	C/8083754-8084872	AT2G18640.1  CDS  gene_syn F24H14.2, GERANYLGERANYL PYROPHOSPHATE SYNTHASE 4, GGPS4  gene GGPS4  function Encodes an endoplasmic reticulum-targeted geranylgeranyl pyrophosphate synthase  go_component endoplasmic reticulum|GO:0005783|10759500|IDA  go_process isoprenoid biosynthetic process|GO:0008299|10759500|TAS  go_process isoprenoid biosynthetic process|GO:0008299||ISS  go_function farnesyltranstransferase activity|GO:0004311|10759500|IDA  go_function farnesyltranstransferase activity|GO:0004311|9150607|IGI  product GGPS4 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 4); farnesyltranstransferase  note GERANYLGERANYL PYROPHOSPHATE SYNTHASE 4 (GGPS4); FUNCTIONS IN: farnesyltranstransferase activity; INVOLVED IN: isoprenoid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: GGPS2 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 2); farnesyltranstransferase (TAIR:AT2G23800.1); Has 11624 Blast hits to 11620 proteins in 1682 species: Archae - 213; Bacteria - 4921; Metazoa - 259; Fungi - 339; Plants - 282; Viruses - 6; Other Eukaryotes - 5604 (source: NCBI BLink).  protein_id AT2G18640.1p  transcript_id AT2G18640.1  protein_id AT2G18640.1p  transcript_id AT2G18640.1  
At2g18650	chr2:008086860	0.0	C/8086860-8088131	AT2G18650.1  CDS  gene_syn MEE16, MSF3.3, MSF3_3, maternal effect embryo arrest 16  gene MEE16  go_component chloroplast|GO:0009507||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product MEE16 (maternal effect embryo arrest 16); protein binding / zinc ion binding  note maternal effect embryo arrest 16 (MEE16); FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G30400.1); Has 6137 Blast hits to 6120 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 1876; Fungi - 515; Plants - 2656; Viruses - 44; Other Eukaryotes - 1046 (source: NCBI BLink).  protein_id AT2G18650.1p  transcript_id AT2G18650.1  protein_id AT2G18650.1p  transcript_id AT2G18650.1  
At2g18660	chr2:008091530	0.0	C/8091530-8091644,8091160-8091430,8091032-8091038	AT2G18660.1  CDS  gene_syn EXLB3, EXPANSIN-LIKE B3 PRECURSOR, MSF3.4, MSF3_4  gene EXLB3  function Encodes PNP-A (Plant Natriuretic Peptide A). PNPs are a class of systemically mobile molecules distantly related to expansins; their biological role has remained elusive. PNP-A contains a signal peptide domain and is secreted into the extracellular space. Co-expression analyses using microarray data suggest that PNP-A may function as a component of plant defence response and SAR in particular, and could be classified as a newly identified PR protein.  go_component cell wall|GO:0005618|15593128|IDA  go_component extracellular region|GO:0005576||ISS  product EXLB3 (EXPANSIN-LIKE B3 PRECURSOR)  note EXPANSIN-LIKE B3 PRECURSOR (EXLB3); LOCATED IN: extracellular region, cell wall; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: EXLB2 (EXPANSIN-LIKE B2 PRECURSOR) (TAIR:AT4G30380.1); Has 117 Blast hits to 117 proteins in 42 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 6; Plants - 106; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G18660.1p  transcript_id AT2G18660.1  protein_id AT2G18660.1p  transcript_id AT2G18660.1  
At2g18670	chr2:008093469	0.0	W/8093469-8094010,8094449-8094452	AT2G18670.1  CDS  gene_syn MSF3.5, MSF3_5  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G30370.1); Has 5644 Blast hits to 5627 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 1943; Fungi - 402; Plants - 2469; Viruses - 17; Other Eukaryotes - 813 (source: NCBI BLink).  protein_id AT2G18670.1p  transcript_id AT2G18670.1  protein_id AT2G18670.1p  transcript_id AT2G18670.1  
At2g18680	chr2:008094780	0.0	W/8094780-8095643	AT2G18680.1  CDS  gene_syn MSF3.6, MSF3_6  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G18690.1); Has 116 Blast hits to 114 proteins in 17 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G18680.1p  transcript_id AT2G18680.1  protein_id AT2G18680.1p  transcript_id AT2G18680.1  
At2g18690	chr2:008097650	0.0	W/8097650-8098618	AT2G18690.1  CDS  gene_syn MSF3.7, MSF3_7  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G18680.1); Has 115 Blast hits to 113 proteins in 14 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G18690.1p  transcript_id AT2G18690.1  protein_id AT2G18690.1p  transcript_id AT2G18690.1  
At2g18690	chr2:008097893	0.0	W/8097893-8098618	AT2G18690.2  CDS  gene_syn MSF3.7, MSF3_7  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G18680.1); Has 97 Blast hits to 95 proteins in 12 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G18690.2p  transcript_id AT2G18690.2  protein_id AT2G18690.2p  transcript_id AT2G18690.2  
At2g18700	chr2:008109043	0.0	W/8109043-8111006,8111094-8111367,8111449-8111799	AT2G18700.1  CDS  gene_syn ARABIDOPSIS THALIANA TREHALOSE PHOSPHATASE/SYNTHASE 11, ATTPS11, ATTPSB, MSF3.8, MSF3_8, TPS11, TREHALOSE-6-PHOSPHATE SYNTHASE 11  gene ATTPS11  function Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain.  go_process trehalose biosynthetic process|GO:0005992||IEA  go_process metabolic process|GO:0008152||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product ATTPS11; transferase, transferring glycosyl groups  note ATTPS11; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: trehalose biosynthetic process, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Glycosyl transferase, family 20 (InterPro:IPR001830), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: ATTPS9; transferase, transferring glycosyl groups / trehalose-phosphatase (TAIR:AT1G23870.1); Has 2675 Blast hits to 2628 proteins in 610 species: Archae - 36; Bacteria - 1358; Metazoa - 140; Fungi - 473; Plants - 262; Viruses - 0; Other Eukaryotes - 406 (source: NCBI BLink).  protein_id AT2G18700.1p  transcript_id AT2G18700.1  protein_id AT2G18700.1p  transcript_id AT2G18700.1  
At2g18710	chr2:008114250	0.0	C/8114250-8114452,8113882-8114039,8113114-8113799,8112819-8113032,8112568-8112731,8112231-8112461	AT2G18710.1  CDS  gene_syn SCY1, SecY Homolog 1  gene SCY1  go_component chloroplast|GO:0009507|18431481|IDA  go_process protein transport|GO:0015031||IEA  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||IEA  go_component membrane|GO:0016020||ISS  go_process protein secretion|GO:0009306||ISS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product SCY1 (SecY Homolog 1); P-P-bond-hydrolysis-driven protein transmembrane transporter  note SecY Homolog 1 (SCY1); FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein secretion, protein transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SecY protein (InterPro:IPR002208); BEST Arabidopsis thaliana protein match is: EMB2289 (EMBRYO DEFECTIVE 2289); P-P-bond-hydrolysis-driven protein transmembrane transporter (TAIR:AT2G31530.1); Has 6517 Blast hits to 6501 proteins in 1505 species: Archae - 48; Bacteria - 2805; Metazoa - 25; Fungi - 2; Plants - 53; Viruses - 0; Other Eukaryotes - 3584 (source: NCBI BLink).  protein_id AT2G18710.1p  transcript_id AT2G18710.1  protein_id AT2G18710.1p  transcript_id AT2G18710.1  
At2g18720	chr2:008116636	0.0	C/8116636-8116759,8116369-8116537,8116190-8116292,8115879-8116106,8115575-8115793,8114920-8115489	AT2G18720.1  CDS  gene_syn MSF3.10, MSF3_10  go_component membrane|GO:0016020||IEA  go_process proteolysis|GO:0006508||IEA  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_function serine-type peptidase activity|GO:0008236||IEA  go_function translation factor activity, nucleic acid binding|GO:0008135||ISS  product GTP binding / GTPase/ serine-type peptidase/ translation factor, nucleic acid binding  note GTP binding / GTPase/ serine-type peptidase/ translation factor, nucleic acid binding; FUNCTIONS IN: serine-type peptidase activity, translation factor activity, nucleic acid binding, GTP binding, GTPase activity; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: male gametophyte; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Initiation factor eIF2 gamma, C-terminal (InterPro:IPR015256), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Peptidase S26A, signal peptidase I (InterPro:IPR000223), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 2 subunit 3, putative / eIF2S3, putative / eIF-2-gamma, putative (TAIR:AT4G18330.2); Has 26697 Blast hits to 26667 proteins in 7270 species: Archae - 443; Bacteria - 11821; Metazoa - 6397; Fungi - 1292; Plants - 839; Viruses - 0; Other Eukaryotes - 5905 (source: NCBI BLink).  protein_id AT2G18720.1p  transcript_id AT2G18720.1  protein_id AT2G18720.1p  transcript_id AT2G18720.1  
At2g18721	chr2:008116999	0.0	W/8116999-8117106	AT2G18721.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G18721.1p  transcript_id AT2G18721.1  protein_id AT2G18721.1p  transcript_id AT2G18721.1  
At2g18730	chr2:008118976	0.0	W/8118976-8119335,8119656-8119778,8119870-8120007,8120091-8120176,8120267-8120354,8120461-8120536,8120624-8120706,8120827-8120897,8121003-8121080,8121168-8121255,8121336-8121452,8121531-8121689	AT2G18730.1  CDS  gene_syn MSF3.11, MSF3_11  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|GO:0007205||IEA  go_function diacylglycerol kinase activity|GO:0004143||IEA  go_process activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|GO:0007205||ISS  go_function diacylglycerol kinase activity|GO:0004143||ISS  product diacylglycerol kinase, putative  note diacylglycerol kinase, putative; FUNCTIONS IN: diacylglycerol kinase activity; INVOLVED IN: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Diacylglycerol kinase, catalytic region (InterPro:IPR001206), Diacylglycerol kinase accessory region (InterPro:IPR000756), Diacylglycerol kinase, plant (InterPro:IPR016961); BEST Arabidopsis thaliana protein match is: ATDGK7 (Diacylglycerol kinase 7); diacylglycerol kinase (TAIR:AT4G30340.1); Has 1222 Blast hits to 1067 proteins in 153 species: Archae - 0; Bacteria - 98; Metazoa - 849; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).  protein_id AT2G18730.1p  transcript_id AT2G18730.1  protein_id AT2G18730.1p  transcript_id AT2G18730.1  
At2g18735	chr2:008122119	0.0	W/8122119-8123076	AT2G18735.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G18735.1  
At2g18740	chr2:008123334	0.0	W/8123334-8123375,8123476-8123502,8123602-8123664,8124386-8124464,8124552-8124597,8124701-8124710	AT2G18740.1  CDS  gene_syn MSF3.12, MSF3_12  go_component nucleus|GO:0005634||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative  note small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative (TAIR:AT4G30330.1); Has 513 Blast hits to 513 proteins in 151 species: Archae - 78; Bacteria - 0; Metazoa - 173; Fungi - 106; Plants - 69; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).  protein_id AT2G18740.1p  transcript_id AT2G18740.1  protein_id AT2G18740.1p  transcript_id AT2G18740.1  
At2g18740	chr2:008123334	0.0	W/8123334-8123375,8123476-8123502,8123602-8123664,8124386-8124464,8124556-8124581	AT2G18740.2  CDS  gene_syn MSF3.12, MSF3_12  go_component nucleus|GO:0005634||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative  note small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative (TAIR:AT4G30330.1); Has 289 Blast hits to 289 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 117; Fungi - 70; Plants - 43; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT2G18740.2p  transcript_id AT2G18740.2  protein_id AT2G18740.2p  transcript_id AT2G18740.2  
At2g18750	chr2:008125827	0.0	W/8125827-8125942,8126093-8126168,8126259-8126317,8126398-8126891,8126977-8127137,8127224-8127421,8127517-8127694,8127777-8128363	AT2G18750.1  CDS  gene_syn MSF3.13, MSF3_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516|11782485|IEP  go_function calmodulin binding|GO:0005516|11782485|TAS  product calmodulin-binding protein  note calmodulin-binding protein; FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Calmodulin binding protein-like (InterPro:IPR012416); BEST Arabidopsis thaliana protein match is: calmodulin-binding protein (TAIR:AT5G57580.1); Has 187 Blast hits to 180 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 187; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G18750.1p  transcript_id AT2G18750.1  protein_id AT2G18750.1p  transcript_id AT2G18750.1  
At2g18750	chr2:008125827	0.0	W/8125827-8125942,8126093-8126168,8126259-8126317,8126398-8126891,8126977-8127137,8127224-8127421,8127517-8127694,8127777-8128363	AT2G18750.2  CDS  gene_syn MSF3.13, MSF3_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516|11782485|IEP  go_function calmodulin binding|GO:0005516|11782485|TAS  product calmodulin-binding protein  note calmodulin-binding protein; FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Calmodulin binding protein-like (InterPro:IPR012416); BEST Arabidopsis thaliana protein match is: calmodulin-binding protein (TAIR:AT5G57580.1); Has 187 Blast hits to 180 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 187; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G18750.2p  transcript_id AT2G18750.2  protein_id AT2G18750.2p  transcript_id AT2G18750.2  
At2g18760	chr2:008129154	0.0	W/8129154-8129243,8129355-8129876,8130007-8130409,8130689-8131556,8131638-8132247,8132337-8132774,8132870-8133502	AT2G18760.1  CDS  gene_syn CHR8, ERCC6, MSF3.14, MSF3_14, RAD26, chromatin remodeling 8  gene CHR8  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_process DNA repair|GO:0006281|16547115|IMP  go_process response to gamma radiation|GO:0010332|16547115|IMP  go_function DNA binding|GO:0003677||ISS  go_function helicase activity|GO:0004386||ISS  go_function ATP binding|GO:0005524||ISS  product CHR8 (chromatin remodeling 8); ATP binding / DNA binding / helicase/ nucleic acid binding  note chromatin remodeling 8 (CHR8); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: DNA repair, response to gamma radiation; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: CHR24 (chromatin remodeling 24); ATP binding / DNA binding / helicase/ nucleic acid binding (TAIR:AT5G63950.1); Has 11886 Blast hits to 9889 proteins in 909 species: Archae - 62; Bacteria - 2135; Metazoa - 3319; Fungi - 2801; Plants - 801; Viruses - 104; Other Eukaryotes - 2664 (source: NCBI BLink).  protein_id AT2G18760.1p  transcript_id AT2G18760.1  protein_id AT2G18760.1p  transcript_id AT2G18760.1  
At2g18770	chr2:008134984	0.0	W/8134984-8135122,8135292-8135374,8135530-8135619,8135704-8135852,8135944-8136075,8136171-8136360	AT2G18770.1  CDS  gene_syn MSF3.15, MSF3_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function signal recognition particle binding|GO:0005047||ISS  product signal recognition particle binding  note signal recognition particle binding; FUNCTIONS IN: signal recognition particle binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: signal recognition particle binding (TAIR:AT5G05670.2); Has 734 Blast hits to 734 proteins in 177 species: Archae - 2; Bacteria - 55; Metazoa - 350; Fungi - 108; Plants - 88; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).  protein_id AT2G18770.1p  transcript_id AT2G18770.1  protein_id AT2G18770.1p  transcript_id AT2G18770.1  
At2g18780	chr2:008136983	0.0	C/8136983-8138095	AT2G18780.1  CDS  gene_syn MSF3.16, MSF3_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G16740.1); Has 651 Blast hits to 628 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 649; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G18780.1p  transcript_id AT2G18780.1  protein_id AT2G18780.1p  transcript_id AT2G18780.1  
At2g18790	chr2:008140079	0.0	W/8140079-8142242,8142331-8143138,8143229-8143519,8143896-8144151	AT2G18790.1  CDS  gene_syn HY3, MSF3.17, MSF3_17, OOP1, OUT OF PHASE 1, PHYB, PHYTOCHROME B  gene PHYB  function Red/far-red photoreceptor involved in the regulation of de-etiolation. Exists in two inter-convertible forms: Pr and Pfr (active). Involved in the light-promotion of seed germination and in the shade avoidance response.  go_component nucleus|GO:0005634|10225946|IDA  go_component nucleus|GO:0005634|15823535|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to cold|GO:0009409|12148528|IMP  go_process gravitropism|GO:0009630|15695459|IMP  go_process phototropism|GO:0009638|14686433|IMP  go_process entrainment of circadian clock|GO:0009649|12177480|IMP  go_process abscisic acid metabolic process|GO:0009687|17010113|IMP  go_process jasmonic acid mediated signaling pathway|GO:0009867|19251652|IMP  go_process regulation of seed germination|GO:0010029|17010113|IMP  go_process transpiration|GO:0010148|19363093|IMP  go_process red light signaling pathway|GO:0010161|17076805|IMP  go_process response to low fluence red light stimulus|GO:0010202|9351250|IMP  go_process stomatal complex development|GO:0010374|19363093|IMP  go_process circadian regulation of calcium ion oscillation|GO:0010617|17982000|IMP  go_process photosynthesis|GO:0015979|19363093|IMP  go_process regulation of defense response|GO:0031347|19251652|IMP  go_function protein histidine kinase activity|GO:0004673||ISS  go_function signal transducer activity|GO:0004871||ISS  go_function G-protein coupled photoreceptor activity|GO:0008020||ISS  go_function red or far-red light photoreceptor activity|GO:0009883|12177480|IMP  product PHYB (PHYTOCHROME B); G-protein coupled photoreceptor/ protein histidine kinase/ red or far-red light photoreceptor/ signal transducer  note PHYTOCHROME B (PHYB); FUNCTIONS IN: red or far-red light photoreceptor activity, protein histidine kinase activity, G-protein coupled photoreceptor activity, signal transducer activity; INVOLVED IN: in 15 processes; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATP-binding region, ATPase-like (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome A/B/C/D/E (InterPro:IPR012129), Phytochrome (InterPro:IPR001294), Phytochrome chromophore binding site (InterPro:IPR013516), Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region (InterPro:IPR003661), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: PHYD (PHYTOCHROME DEFECTIVE D); G-protein coupled photoreceptor/ red or far-red light photoreceptor/ signal transducer (TAIR:AT4G16250.1); Has 15627 Blast hits to 15474 proteins in 2338 species: Archae - 181; Bacteria - 11234; Metazoa - 7; Fungi - 351; Plants - 2883; Viruses - 5; Other Eukaryotes - 966 (source: NCBI BLink).  protein_id AT2G18790.1p  transcript_id AT2G18790.1  protein_id AT2G18790.1p  transcript_id AT2G18790.1  
At2g18800	chr2:008144947	0.0	W/8144947-8145222,8145314-8145507,8145818-8146265	AT2G18800.1  CDS  gene_syn ATXTH21, MSF3.18, MSF3_18, XTH21, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 21  gene XTH21  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process cell wall modification|GO:0042545|17674032|IMP  go_process primary root development|GO:0080022|17674032|IMP  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  go_function xyloglucan endotransglucosylase activity|GO:0080039|17674032|IDA  product XTH21 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 21); hydrolase, acting on glycosyl bonds / xyloglucan endotransglucosylase  note XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 21 (XTH21); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan endotransglucosylase activity; INVOLVED IN: primary root development, cell wall modification; LOCATED IN: endomembrane system, apoplast, cell wall; EXPRESSED IN: stem, flower, root, leaf; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: TCH4 (Touch 4); hydrolase, acting on glycosyl bonds / xyloglucan:xyloglucosyl transferase (TAIR:AT5G57560.1); Has 1424 Blast hits to 1415 proteins in 222 species: Archae - 0; Bacteria - 205; Metazoa - 0; Fungi - 298; Plants - 809; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).  protein_id AT2G18800.1p  transcript_id AT2G18800.1  protein_id AT2G18800.1p  transcript_id AT2G18800.1  
At2g18810	chr2:008149203	0.0	C/8149203-8149469,8147939-8148376	AT2G18810.1  CDS  gene_syn MSF3.19, MSF3_19  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508), Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT2G31720.1); Has 54 Blast hits to 54 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G18810.1p  transcript_id AT2G18810.1  protein_id AT2G18810.1p  transcript_id AT2G18810.1  
At2g18820	chr2:008150995	0.0	W/8150995-8156099	AT2G18820.1  mRNA_TE_gene  pseudo  gene_syn MSF3.20  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.7e-38 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)  
At2g18830	chr2:008156204	0.0	C/8156204-8156401	AT2G18830.1  CDS  gene_syn MSF3.21, MSF3_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT3G15010.2); Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G18830.1p  transcript_id AT2G18830.1  protein_id AT2G18830.1p  transcript_id AT2G18830.1  
At2g18840	chr2:008158288	0.0	W/8158288-8158797,8159424-8159498,8159588-8159848	AT2G18840.1  CDS  gene_syn MSF3.22, MSF3_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane Yip1 family protein  note integral membrane Yip1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Yip1 domain (InterPro:IPR006977); BEST Arabidopsis thaliana protein match is: integral membrane Yip1 family protein (TAIR:AT4G30260.1); Has 598 Blast hits to 598 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 326; Fungi - 125; Plants - 63; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT2G18840.1p  transcript_id AT2G18840.1  protein_id AT2G18840.1p  transcript_id AT2G18840.1  
At2g18850	chr2:008160788	0.0	W/8160788-8160790,8160907-8160990,8161181-8161309,8161379-8161670,8161753-8161871,8161958-8162090,8162177-8162253,8162341-8162535,8162621-8162810,8162890-8163062,8163155-8163255,8163344-8163479	AT2G18850.1  CDS  gene_syn MSF3.23, MSF3_23  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: SET domain-containing protein (TAIR:AT3G07670.1); Has 597 Blast hits to 594 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 207; Fungi - 132; Plants - 162; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT2G18850.1p  transcript_id AT2G18850.1  protein_id AT2G18850.1p  transcript_id AT2G18850.1  
At2g18860	chr2:008164358	0.0	W/8164358-8164440,8164561-8164651,8164742-8165332,8165404-8165503,8165625-8165650	AT2G18860.1  CDS  gene_syn MSF3.24  go_component nucleus|GO:0005634|14617066|IDA  go_process vesicle-mediated transport|GO:0016192||IEA  go_process Golgi vesicle transport|GO:0048193||IEA  go_function protein binding|GO:0005515||IEA  product syntaxin family protein  note syntaxin family protein; FUNCTIONS IN: protein binding; INVOLVED IN: Golgi vesicle transport, vesicle-mediated transport; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: t-SNARE (InterPro:IPR010989), Syntaxin 6, N-terminal (InterPro:IPR015260); BEST Arabidopsis thaliana protein match is: protein binding (TAIR:AT4G30240.1); Has 58 Blast hits to 58 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G18860.1p  transcript_id AT2G18860.1  protein_id AT2G18860.1p  transcript_id AT2G18860.1  
At2g18860	chr2:008164395	0.0	W/8164395-8164420,8164561-8164651,8164742-8165332,8165404-8165503,8165625-8165650	AT2G18860.2  CDS  gene_syn MSF3.24  go_process vesicle-mediated transport|GO:0016192||IEA  go_process Golgi vesicle transport|GO:0048193||IEA  go_function protein binding|GO:0005515||IEA  product syntaxin family protein  note syntaxin family protein; FUNCTIONS IN: protein binding; INVOLVED IN: Golgi vesicle transport, vesicle-mediated transport; CONTAINS InterPro DOMAIN/s: t-SNARE (InterPro:IPR010989), Syntaxin 6, N-terminal (InterPro:IPR015260); BEST Arabidopsis thaliana protein match is: protein binding (TAIR:AT4G30240.1); Has 47 Blast hits to 47 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G18860.2p  transcript_id AT2G18860.2  protein_id AT2G18860.2p  transcript_id AT2G18860.2  
At2g18870	chr2:008167471	0.0	W/8167471-8167489,8167703-8167891,8167978-8168457,8168637-8168668	AT2G18870.1  CDS  gene_syn F19F24.7, F19F24_7, VEL3, VERNALIZATION5/VIN3-LIKE  gene VEL3  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product VEL3 (VERNALIZATION5/VIN3-LIKE)  note VERNALIZATION5/VIN3-LIKE (VEL3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30200.3); Has 59 Blast hits to 59 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G18870.1p  transcript_id AT2G18870.1  protein_id AT2G18870.1p  transcript_id AT2G18870.1  
At2g18876	chr2:008169683	0.0	W/8169683-8169715,8169805-8169842,8169915-8170026,8170107-8170204,8170581-8170677,8170752-8170841,8170968-8171030,8171110-8171184,8171275-8171340,8171432-8171509,8171597-8171707,8171816-8171893,8171991-8172110,8172198-8172287	AT2G18876.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57410.1); Has 5564 Blast hits to 4509 proteins in 349 species: Archae - 25; Bacteria - 290; Metazoa - 2952; Fungi - 394; Plants - 151; Viruses - 9; Other Eukaryotes - 1743 (source: NCBI BLink).  protein_id AT2G18876.1p  transcript_id AT2G18876.1  protein_id AT2G18876.1p  transcript_id AT2G18876.1  
At2g18876	chr2:008170594	0.0	W/8170594-8170677,8170752-8170841,8170968-8171030,8171110-8171184,8171275-8171340,8171432-8171509,8171597-8171707,8171816-8171893,8171991-8172110,8172198-8172287	AT2G18876.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57410.2); Has 1846 Blast hits to 1618 proteins in 197 species: Archae - 2; Bacteria - 99; Metazoa - 1049; Fungi - 90; Plants - 73; Viruses - 0; Other Eukaryotes - 533 (source: NCBI BLink).  protein_id AT2G18876.2p  transcript_id AT2G18876.2  protein_id AT2G18876.2p  transcript_id AT2G18876.2  
At2g18880	chr2:008176386	0.0	W/8176386-8176404,8176964-8177281,8177372-8177669,8177752-8178050,8178133-8178788	AT2G18880.1  CDS  gene_syn (VERNALIZATION5/VIN3-LIKE), F19F24.8, F19F24_8, VEL2  gene VEL2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product VEL2 ((VERNALIZATION5/VIN3-LIKE))  note (VERNALIZATION5/VIN3-LIKE) (VEL2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Fibronectin, type III (InterPro:IPR003961); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30200.3); Has 144 Blast hits to 60 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G18880.1p  transcript_id AT2G18880.1  protein_id AT2G18880.1p  transcript_id AT2G18880.1  
At2g18890	chr2:008184027	0.0	W/8184027-8184237,8184308-8184568,8184717-8184874,8184984-8185063,8185151-8185242,8185642-8185673	AT2G18890.2  CDS  gene_syn F19F24.9, F19F24_9  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G57670.2); Has 77334 Blast hits to 76637 proteins in 2774 species: Archae - 31; Bacteria - 6646; Metazoa - 34327; Fungi - 5592; Plants - 17646; Viruses - 335; Other Eukaryotes - 12757 (source: NCBI BLink).  protein_id AT2G18890.2p  transcript_id AT2G18890.2  protein_id AT2G18890.2p  transcript_id AT2G18890.2  
At2g18890	chr2:008184027	0.0	W/8184027-8184237,8184308-8184568,8184717-8184874,8184984-8185063,8185151-8185286,8185642-8185791,8186503-8186685	AT2G18890.1  CDS  gene_syn F19F24.9, F19F24_9  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G18910.1); Has 79900 Blast hits to 79142 proteins in 2822 species: Archae - 35; Bacteria - 7020; Metazoa - 35262; Fungi - 5900; Plants - 18082; Viruses - 357; Other Eukaryotes - 13244 (source: NCBI BLink).  protein_id AT2G18890.1p  transcript_id AT2G18890.1  protein_id AT2G18890.1p  transcript_id AT2G18890.1  
At2g18900	chr2:008192290	0.0	C/8192290-8192409,8192028-8192213,8191752-8191940,8191245-8191650,8190991-8191109,8190817-8190894,8190537-8190677,8190399-8190443,8190149-8190315,8189892-8189970,8189729-8189805,8189503-8189632,8189285-8189417,8189035-8189201,8188787-8188949,8188491-8188705	AT2G18900.1  CDS  gene_syn F19F24.10, F19F24_10  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G26480.1); Has 3365 Blast hits to 2295 proteins in 261 species: Archae - 18; Bacteria - 1409; Metazoa - 602; Fungi - 692; Plants - 164; Viruses - 0; Other Eukaryotes - 480 (source: NCBI BLink).  protein_id AT2G18900.1p  transcript_id AT2G18900.1  protein_id AT2G18900.1p  transcript_id AT2G18900.1  
At2g18910	chr2:008193888	0.0	C/8193888-8194131,8193498-8193595,8193016-8193069	AT2G18910.1  CDS  gene_syn F19F24.21  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 70 Blast hits to 52 proteins in 13 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 2; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G18910.1p  transcript_id AT2G18910.1  protein_id AT2G18910.1p  transcript_id AT2G18910.1  
At2g18915	chr2:008197011	0.0	C/8197011-8197255,8194792-8196382	AT2G18915.2  CDS  gene_syn ADAGIO 2, ADO2, LKP2, LOV KELCH PROTEIN 2  gene LKP2  function encodes a member of F-box proteins that includes two other proteins in Arabidopsis (ZTL and FKF1). These proteins contain a unique structure containing a PAS domain at their N-terminus, an F-box motif, and 6 kelch repeats at their C-terminus. Overexpression results in arrhythmic phenotypes for a number of circadian clock outputs in both constant light and constant darkness, long hypocotyls under multiple fluences of both red and blue light, and a loss of photoperiodic control of flowering time. Although this the expression of this gene itself is not regulated by circadian clock, it physically interacts with Dof transcription factors that are transcriptionally regulated by circadian rhythm. LKP2 interacts with Di19, CO/COL family proteins.  go_component cytosol|GO:0005829|15937324|IDA  go_component Cajal body|GO:0015030|15937324|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process circadian rhythm|GO:0007623|11260718|ISS  go_process circadian rhythm|GO:0007623||ISS  go_process regulation of circadian rhythm|GO:0042752|11752379|IMP  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|15937324|IPI  product LKP2 (LOV KELCH PROTEIN 2); protein binding / ubiquitin-protein ligase  note LOV KELCH PROTEIN 2 (LKP2); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: regulation of circadian rhythm, circadian rhythm, ubiquitin-dependent protein catabolic process; LOCATED IN: cytosol, Cajal body; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Kelch repeat type 1 (InterPro:IPR006652), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 2 (InterPro:IPR011498), PAS (InterPro:IPR000014), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: ZTL (ZEITLUPE); protein binding / ubiquitin-protein ligase (TAIR:AT5G57360.1); Has 6321 Blast hits to 4061 proteins in 529 species: Archae - 59; Bacteria - 1424; Metazoa - 2201; Fungi - 627; Plants - 989; Viruses - 0; Other Eukaryotes - 1021 (source: NCBI BLink).  protein_id AT2G18915.2p  transcript_id AT2G18915.2  protein_id AT2G18915.2p  transcript_id AT2G18915.2  
At2g18915	chr2:008197021	0.0	C/8197021-8197255,8194792-8196362	AT2G18915.1  CDS  gene_syn ADAGIO 2, ADO2, LKP2, LOV KELCH PROTEIN 2  gene LKP2  function encodes a member of F-box proteins that includes two other proteins in Arabidopsis (ZTL and FKF1). These proteins contain a unique structure containing a PAS domain at their N-terminus, an F-box motif, and 6 kelch repeats at their C-terminus. Overexpression results in arrhythmic phenotypes for a number of circadian clock outputs in both constant light and constant darkness, long hypocotyls under multiple fluences of both red and blue light, and a loss of photoperiodic control of flowering time. Although this the expression of this gene itself is not regulated by circadian clock, it physically interacts with Dof transcription factors that are transcriptionally regulated by circadian rhythm. LKP2 interacts with Di19, CO/COL family proteins.  go_component cytosol|GO:0005829|15937324|IDA  go_component Cajal body|GO:0015030|15937324|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process circadian rhythm|GO:0007623|11260718|ISS  go_process circadian rhythm|GO:0007623||ISS  go_process regulation of circadian rhythm|GO:0042752|11752379|IMP  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|15937324|IPI  product LKP2 (LOV KELCH PROTEIN 2); protein binding / ubiquitin-protein ligase  note LOV KELCH PROTEIN 2 (LKP2); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: regulation of circadian rhythm, circadian rhythm, ubiquitin-dependent protein catabolic process; LOCATED IN: cytosol, Cajal body; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), PAC motif (InterPro:IPR001610), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: ZTL (ZEITLUPE); protein binding / ubiquitin-protein ligase (TAIR:AT5G57360.1); Has 5955 Blast hits to 3704 proteins in 511 species: Archae - 49; Bacteria - 1267; Metazoa - 2028; Fungi - 612; Plants - 994; Viruses - 0; Other Eukaryotes - 1005 (source: NCBI BLink).  protein_id AT2G18915.1p  transcript_id AT2G18915.1  protein_id AT2G18915.1p  transcript_id AT2G18915.1  
At2g18917	chr2:008197114	0.0	W/8197114-8198103	AT2G18917.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G18920 and AT2G18915  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G18917.1  
At2g18920	chr2:008197753	0.0	C/8197753-8198160	AT2G18920.1  CDS  gene_syn F19F24.12, F19F24_12  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G18920.1p  transcript_id AT2G18920.1  protein_id AT2G18920.1p  transcript_id AT2G18920.1  
At2g18930	chr2:008198778	0.0	W/8198778-8198891,8198959-8199072	AT2G18930.1  CDS  gene_syn F19F24.13, F19F24_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G18930.1p  transcript_id AT2G18930.1  protein_id AT2G18930.1p  transcript_id AT2G18930.1  
At2g18938	chr2:008202216	0.0	W/8202216-8202581	AT2G18938.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G18938.1p  transcript_id AT2G18938.1  protein_id AT2G18938.1p  transcript_id AT2G18938.1  
At2g18940	chr2:008203873	0.0	C/8203873-8206341	AT2G18940.1  CDS  gene_syn F19F24.14, F19F24_14  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G02860.1); Has 28771 Blast hits to 6230 proteins in 192 species: Archae - 4; Bacteria - 37; Metazoa - 1100; Fungi - 676; Plants - 25361; Viruses - 0; Other Eukaryotes - 1593 (source: NCBI BLink).  protein_id AT2G18940.1p  transcript_id AT2G18940.1  protein_id AT2G18940.1p  transcript_id AT2G18940.1  
At2g18950	chr2:008207491	0.0	W/8207491-8207530,8207768-8207818,8208023-8208267,8208360-8208443,8208529-8208603,8208695-8208778,8208857-8208946,8209048-8209149,8209234-8209329,8209425-8209496,8209591-8209686,8209780-8209884,8210006-8210047	AT2G18950.1  CDS  gene_syn ATHPT, F19F24.15, F19F24_15, HOMOGENTISATE PHYTYLTRANSFERASE, HOMOGENTISATE PHYTYLTRANSFERASE 1, HPT1, TOCOPHEROL PHYTYLTRANSFERASE, TOCOPHEROL POLYPRENYLTRANSFERASE, TPT1, VITAMIN E 2, VTE2  gene HPT1  function Encodes homogentisate phytyltransferase involved in tocopherol biosynthesis. Has impact on seed longevity and plays a role in the adaptation to low temperature stress, notably phloem loading.  go_component chloroplast|GO:0009507|11706191|ISS  go_process unsaturated fatty acid biosynthetic process|GO:0006636|18314499|IMP  go_process cell wall organization|GO:0007047|18314499|IMP  go_process response to temperature stimulus|GO:0009266|17012603|IMP  go_process phloem loading|GO:0009915|17012603|IMP  go_process vitamin E biosynthetic process|GO:0010189|12586887|IMP  go_process vitamin E biosynthetic process|GO:0010189||TAS  go_process regulation of defense response|GO:0031347|17194769|IMP  go_process fat-soluble vitamin biosynthetic process|GO:0042362|11706191|TAS  go_function prenyltransferase activity|GO:0004659|11706191|IDA  go_function homogentisate phytyltransferase activity|GO:0010176|11706191|IDA  go_function homogentisate phytyltransferase activity|GO:0010176|15155886|IMP  product HPT1 (HOMOGENTISATE PHYTYLTRANSFERASE 1); homogentisate phytyltransferase/ prenyltransferase  note HOMOGENTISATE PHYTYLTRANSFERASE 1 (HPT1); FUNCTIONS IN: prenyltransferase activity, homogentisate phytyltransferase activity; INVOLVED IN: in 7 processes; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UbiA prenyltransferase (InterPro:IPR000537); BEST Arabidopsis thaliana protein match is: homogentisate farnesyltransferase/ homogentisate geranylgeranyltransferase/ homogentisate solanesyltransferase (TAIR:AT3G11945.2); Has 729 Blast hits to 728 proteins in 208 species: Archae - 116; Bacteria - 347; Metazoa - 6; Fungi - 2; Plants - 101; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).  protein_id AT2G18950.1p  transcript_id AT2G18950.1  protein_id AT2G18950.1p  transcript_id AT2G18950.1  
At2g18960	chr2:008221858	0.0	W/8221858-8221899,8223178-8223297,8223391-8223627,8223712-8224473,8224569-8224691,8224770-8224874,8224966-8225110,8225200-8225364,8225457-8225695,8225790-8225822,8225913-8225994,8226082-8226242,8226372-8226545,8226630-8226812,8226899-8227080,8227172-8227268	AT2G18960.1  CDS  gene_syn AHA1, ARABIDOPSIS H+ ATPASE 1, F19F24.16, F19F24_16, OPEN STOMATA 2, OST2, PLASMA MEMBRANE PROTON ATPASE, PMA  gene AHA1  function Encodes a plasma membrane proton ATPase. Mutants have a reduced ability to close their stomata in response to drought and are affected in stomatal but not seed responsiveness to ABA.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component membrane|GO:0016020|2521951|ISS  go_process response to water deprivation|GO:0009414|12047634|IMP  go_process response to abscisic acid stimulus|GO:0009737|12047634|IMP  go_process regulation of stomatal movement|GO:0010119|12047634|IMP  go_process proton transport|GO:0015992|8300635|TAS  go_function protein binding|GO:0005515|12182706|IPI  go_function hydrogen-exporting ATPase activity, phosphorylative mechanism|GO:0008553|8300635|IDA  go_function ATPase activity|GO:0016887|17557075|IMP  go_function ATPase activity|GO:0016887||ISS  product AHA1 (ARABIDOPSIS H+ ATPASE 1); ATPase/ hydrogen-exporting ATPase, phosphorylative mechanism / protein binding  note ARABIDOPSIS H+ ATPASE 1 (AHA1); FUNCTIONS IN: protein binding, ATPase activity, hydrogen-exporting ATPase activity, phosphorylative mechanism; INVOLVED IN: response to water deprivation, proton transport, regulation of stomatal movement, response to abscisic acid stimulus; LOCATED IN: nucleus, plasma membrane, vacuole, membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type, plasma-membrane proton-efflux (InterPro:IPR006534), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: AHA2; ATPase/ hydrogen-exporting ATPase, phosphorylative mechanism (TAIR:AT4G30190.1); Has 21096 Blast hits to 18586 proteins in 1822 species: Archae - 423; Bacteria - 11679; Metazoa - 3264; Fungi - 1674; Plants - 1089; Viruses - 3; Other Eukaryotes - 2964 (source: NCBI BLink).  protein_id AT2G18960.1p  transcript_id AT2G18960.1  protein_id AT2G18960.1p  transcript_id AT2G18960.1  
At2g18969	chr2:008229047	0.0	C/8229047-8229574	AT2G18969.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: transcription factor/ transcription regulator (TAIR:AT4G30180.1); Has 49 Blast hits to 49 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G18969.1p  transcript_id AT2G18969.1  protein_id AT2G18969.1p  transcript_id AT2G18969.1  
At2g18970	chr2:008229373	0.0	W/8229373-8229404,8229514-8229670	AT2G18970.1  CDS  gene_syn F19F24.17, F19F24_17  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G18970.1p  transcript_id AT2G18970.1  protein_id AT2G18970.1p  transcript_id AT2G18970.1  
At2g18980	chr2:008235085	0.0	C/8235085-8235294,8234461-8234649,8233914-8234079,8233419-8233825	AT2G18980.1  CDS  gene_syn F19F24.18, F19F24_18  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT4G30170.1); Has 2978 Blast hits to 2961 proteins in 231 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 141; Plants - 2790; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT2G18980.1p  transcript_id AT2G18980.1  protein_id AT2G18980.1p  transcript_id AT2G18980.1  
At2g18990	chr2:008239912	0.0	C/8239912-8239932,8239538-8239813,8239120-8239278,8238851-8239030	AT2G18990.1  CDS  gene_syn F19F24.19, F19F24_19, THIOREDOXIN DOMAIN-CONTAINING PROTEIN 9 HOMOLOG, TXND9  gene TXND9  go_component cellular_component|GO:0005575||ND  product TXND9 (THIOREDOXIN DOMAIN-CONTAINING PROTEIN 9 HOMOLOG)  note THIOREDOXIN DOMAIN-CONTAINING PROTEIN 9 HOMOLOG (TXND9); LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin-related (TAIR:AT3G25580.1); Has 727 Blast hits to 727 proteins in 184 species: Archae - 9; Bacteria - 36; Metazoa - 336; Fungi - 99; Plants - 117; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink).  protein_id AT2G18990.1p  transcript_id AT2G18990.1  protein_id AT2G18990.1p  transcript_id AT2G18990.1  
At2g19000	chr2:008241189	0.0	W/8241189-8241566	AT2G19000.1  CDS  gene_syn T20K24.1, T20K24_1  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G21620.1); Has 49 Blast hits to 49 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G19000.1p  transcript_id AT2G19000.1  protein_id AT2G19000.1p  transcript_id AT2G19000.1  
At2g19010	chr2:008243089	0.0	W/8243089-8243317,8243936-8244060,8244415-8244639,8244798-8245044,8245170-8245378	AT2G19010.1  CDS  gene_syn T20K24.2, T20K24_2  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function lipase activity|GO:0016298||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT2G19050.1); Has 1624 Blast hits to 1610 proteins in 95 species: Archae - 0; Bacteria - 98; Metazoa - 1; Fungi - 4; Plants - 1509; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT2G19010.1p  transcript_id AT2G19010.1  protein_id AT2G19010.1p  transcript_id AT2G19010.1  
At2g19020	chr2:008246220	0.0	W/8246220-8246441	AT2G19020.1  CDS  gene_syn RALFL10, T20K24.3, T20K24_3, ralf-like 10  gene RALFL10  function Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  go_component apoplast|GO:0048046|12611624|ISS  go_process cell-cell signaling|GO:0007267|12611624|ISS  go_function signal transducer activity|GO:0004871|12611624|TAS  product RALFL10 (ralf-like 10); signal transducer  note ralf-like 10 (RALFL10); FUNCTIONS IN: signal transducer activity; INVOLVED IN: cell-cell signaling; LOCATED IN: apoplast; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALFL11 (ralf-like 11); signal transducer (TAIR:AT2G19030.1); Has 18 Blast hits to 18 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G19020.1p  transcript_id AT2G19020.1  protein_id AT2G19020.1p  transcript_id AT2G19020.1  
At2g19030	chr2:008247783	0.0	W/8247783-8248001	AT2G19030.1  CDS  gene_syn RALFL11, T20K24.4, T20K24_4, ralf-like 11  gene RALFL11  function Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  go_component condensed chromosome|GO:0000793|12611624|ISS  go_process cell-cell signaling|GO:0007267|12611624|ISS  go_function signal transducer activity|GO:0004871|12611624|TAS  product RALFL11 (ralf-like 11); signal transducer  note ralf-like 11 (RALFL11); FUNCTIONS IN: signal transducer activity; INVOLVED IN: cell-cell signaling; LOCATED IN: condensed chromosome; CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALFL13 (RALF-LIKE 13); signal transducer (TAIR:AT2G19045.1); Has 31 Blast hits to 31 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G19030.1p  transcript_id AT2G19030.1  protein_id AT2G19030.1p  transcript_id AT2G19030.1  
At2g19040	chr2:008249923	0.0	W/8249923-8250141	AT2G19040.1  CDS  gene_syn RALF-LIKE 12, RALFL12, T20K24.5, T20K24_5  gene RALFL12  function Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  go_component apoplast|GO:0048046|12611624|ISS  go_process cell-cell signaling|GO:0007267|12611624|ISS  go_function signal transducer activity|GO:0004871|12611624|TAS  product RALFL12 (RALF-LIKE 12); signal transducer  note RALF-LIKE 12 (RALFL12); FUNCTIONS IN: signal transducer activity; INVOLVED IN: cell-cell signaling; LOCATED IN: apoplast; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALFL11 (ralf-like 11); signal transducer (TAIR:AT2G19030.1); Has 18 Blast hits to 18 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G19040.1p  transcript_id AT2G19040.1  protein_id AT2G19040.1p  transcript_id AT2G19040.1  
At2g19045	chr2:008251674	0.0	W/8251674-8251892	AT2G19045.1  CDS  gene_syn RALF-LIKE 13, RALFL13  gene RALFL13  function Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  go_component apoplast|GO:0048046|12611624|ISS  go_process cell-cell signaling|GO:0007267|12611624|ISS  go_function signal transducer activity|GO:0004871|12611624|TAS  product RALFL13 (RALF-LIKE 13); signal transducer  note RALF-LIKE 13 (RALFL13); FUNCTIONS IN: signal transducer activity; INVOLVED IN: cell-cell signaling; LOCATED IN: apoplast; CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALFL11 (ralf-like 11); signal transducer (TAIR:AT2G19030.1); Has 31 Blast hits to 31 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G19045.1p  transcript_id AT2G19045.1  protein_id AT2G19045.1p  transcript_id AT2G19045.1  
At2g19050	chr2:008253416	0.0	W/8253416-8253659,8254146-8254270,8254465-8254689,8254903-8255149,8255326-8255534	AT2G19050.1  CDS  gene_syn T20K24.6, T20K24_6  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function lipase activity|GO:0016298||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, sepal, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT2G19060.1); Has 1646 Blast hits to 1632 proteins in 100 species: Archae - 0; Bacteria - 120; Metazoa - 1; Fungi - 6; Plants - 1515; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G19050.1p  transcript_id AT2G19050.1  protein_id AT2G19050.1p  transcript_id AT2G19050.1  
At2g19060	chr2:008257031	0.0	W/8257031-8257271,8257468-8257592,8258360-8258584,8259025-8259277,8259610-8259815	AT2G19060.1  CDS  gene_syn T20K24.7, T20K24_7  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function lipase activity|GO:0016298||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT2G19050.1); Has 1694 Blast hits to 1679 proteins in 123 species: Archae - 0; Bacteria - 164; Metazoa - 1; Fungi - 6; Plants - 1511; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT2G19060.1p  transcript_id AT2G19060.1  protein_id AT2G19060.1p  transcript_id AT2G19060.1  
At2g19070	chr2:008260995	0.0	C/8260995-8261958,8260185-8260576	AT2G19070.1  CDS  gene_syn SHT, SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE, T20K24.8, T20K24_8  gene SHT  function encodes a protein whose sequence is similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus (gi:2239091)  go_component cellular_component|GO:0005575||ND  go_process pollen development|GO:0009555|19077165|IMP  go_process pollen exine formation|GO:0010584||IMP  go_process spermidine hydroxycinnamate conjugate biosynthetic process|GO:0080088|19077165|IDA  go_function N-acyltransferase activity|GO:0016410|19077165|IDA  go_function hydroxycinnamoyltransferase activity|GO:0050734||ISS  go_function spermidine:sinapoyl CoA N-acyltransferase activity|GO:0080072|19077165|IDA  go_function spermidine:coumaroyl CoA N-acyltransferase activity|GO:0080073|19077165|IDA  go_function spermidine:caffeoyl CoA N-acyltransferase activity|GO:0080074|19077165|IDA  go_function spermidine:feruloyl CoA N-acyltransferase activity|GO:0080075|19077165|IDA  product SHT (SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE); N-acyltransferase/ hydroxycinnamoyltransferase/ spermidine:caffeoyl CoA N-acyltransferase/ spermidine:coumaroyl CoA N-acyltransferase/ spermidine:feruloyl CoA N-acyltransferase/ spermidine:sinapoyl CoA N-acyltransferase  note SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE (SHT); FUNCTIONS IN: in 6 functions; INVOLVED IN: spermidine hydroxycinnamate conjugate biosynthetic process, pollen exine formation, pollen development; LOCATED IN: cellular_component unknown; EXPRESSED IN: tapetum, leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HCT (HYDROXYCINNAMOYL-COA SHIKIMATE/QUINATE HYDROXYCINNAMOYL TRANSFERASE); quinate O-hydroxycinnamoyltransferase/ shikimate O-hydroxycinnamoyltransferase/ transferase (TAIR:AT5G48930.1); Has 1430 Blast hits to 1414 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 78; Plants - 1350; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G19070.1p  transcript_id AT2G19070.1  protein_id AT2G19070.1p  transcript_id AT2G19070.1  
At2g19080	chr2:008262818	0.0	W/8262818-8262977,8263532-8263866,8263969-8264045,8264134-8264194,8264305-8264449,8264577-8264746	AT2G19080.1  CDS  gene_syn T20K24.9, T20K24_9  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|14730085|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component mitochondrial outer membrane|GO:0005741|17981999|IDA  go_component mitochondrial inner membrane|GO:0005743|14730085|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process protein targeting to mitochondrion|GO:0006626|17981999|IMP  go_function molecular_function|GO:0003674||ND  product metaxin-related  note metaxin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein targeting to mitochondrion; LOCATED IN: mitochondrial outer membrane, mitochondrion, mitochondrial inner membrane, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metaxin (InterPro:IPR017410); Has 384 Blast hits to 384 proteins in 77 species: Archae - 0; Bacteria - 46; Metazoa - 295; Fungi - 14; Plants - 20; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G19080.1p  transcript_id AT2G19080.1  protein_id AT2G19080.1p  transcript_id AT2G19080.1  
At2g19090	chr2:008266598	0.0	C/8266598-8267879,8266298-8266512,8265988-8266211,8265178-8265901	AT2G19090.1  CDS  gene_syn T20K24.10, T20K24_10  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30130.1); Has 865 Blast hits to 739 proteins in 120 species: Archae - 0; Bacteria - 40; Metazoa - 233; Fungi - 67; Plants - 324; Viruses - 21; Other Eukaryotes - 180 (source: NCBI BLink).  protein_id AT2G19090.1p  transcript_id AT2G19090.1  protein_id AT2G19090.1p  transcript_id AT2G19090.1  
At2g19100	chr2:008269781	0.0	C/8269781-8274895	AT2G19100.1  mRNA_TE_gene  pseudo  gene_syn T20K24.11, T20K24_11  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 3.2e-33 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At2g19110	chr2:008279478	0.0	W/8279478-8279691,8280926-8281183,8282647-8282744,8282884-8283139,8283229-8283366,8283449-8283776,8283861-8284063,8284147-8284349,8284435-8286255	AT2G19110.1  CDS  gene_syn HEAVY METAL ATPASE 4, HMA4, T20K24.12, T20K24_12  gene HMA4  function Encodes a protein with similarity to Zn ATPase. Can rescue Zn deficiency in yeast and Cd resistance, suggesting a role in Zn and Cd transport.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|15670847|TAS  go_process zinc ion transport|GO:0006829|15670847|IMP  go_process cadmium ion transport|GO:0015691|15670847|IMP  go_function zinc ion transmembrane transporter activity|GO:0005385|15670847|IGI  go_function cadmium ion transmembrane transporter activity|GO:0015086|15670847|IGI  go_function cadmium-transporting ATPase activity|GO:0015434||ISS  product HMA4; cadmium ion transmembrane transporter/ cadmium-transporting ATPase/ zinc ion transmembrane transporter  note HMA4; FUNCTIONS IN: zinc ion transmembrane transporter activity, cadmium ion transmembrane transporter activity, cadmium-transporting ATPase activity; INVOLVED IN: cadmium ion transport, zinc ion transport; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type copper-transporter (InterPro:IPR001756), Heavy metal transport/detoxification protein (InterPro:IPR006121), ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating (InterPro:IPR006404), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, heavy metal translocating (InterPro:IPR006416), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: HMA2; cadmium-transporting ATPase (TAIR:AT4G30110.1); Has 22782 Blast hits to 17997 proteins in 1813 species: Archae - 479; Bacteria - 12963; Metazoa - 3620; Fungi - 1599; Plants - 1145; Viruses - 7; Other Eukaryotes - 2969 (source: NCBI BLink).  protein_id AT2G19110.1p  transcript_id AT2G19110.1  protein_id AT2G19110.1p  transcript_id AT2G19110.1  
At2g19120	chr2:008291055	0.0	C/8291055-8291802,8290172-8290351,8289704-8289799,8289493-8289616,8289201-8289333,8287350-8289116,8287036-8287260	AT2G19120.1  CDS  gene_syn T20K24.14, T20K24_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product tRNA-splicing endonuclease positive effector-related  note tRNA-splicing endonuclease positive effector-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: tRNA-splicing endonuclease positive effector-related (TAIR:AT4G30100.1); Has 3923 Blast hits to 3750 proteins in 664 species: Archae - 125; Bacteria - 877; Metazoa - 1082; Fungi - 610; Plants - 307; Viruses - 175; Other Eukaryotes - 747 (source: NCBI BLink).  protein_id AT2G19120.1p  transcript_id AT2G19120.1  protein_id AT2G19120.1p  transcript_id AT2G19120.1  
At2g19130	chr2:008293789	0.0	W/8293789-8296275	AT2G19130.1  CDS  gene_syn T20K24.15, T20K24_15  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function protein kinase activity|GO:0004672||ISS  product S-locus lectin protein kinase family protein  note S-locus lectin protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, sugar binding, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), Apple-like (InterPro:IPR003609), N/apple PAN (InterPro:IPR003014), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), EGF (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: RLK4 (RECEPTOR-LIKE PROTEIN KINASE 4); protein kinase/ sugar binding (TAIR:AT4G00340.1); Has 83755 Blast hits to 82736 proteins in 3084 species: Archae - 44; Bacteria - 7135; Metazoa - 36745; Fungi - 6296; Plants - 19296; Viruses - 372; Other Eukaryotes - 13867 (source: NCBI BLink).  protein_id AT2G19130.1p  transcript_id AT2G19130.1  protein_id AT2G19130.1p  transcript_id AT2G19130.1  
At2g19140	chr2:008297917	0.0	C/8297917-8301717	AT2G19140.1  mRNA_TE_gene  pseudo  gene_syn T20K24.16, T20K24_16  note Transposable element gene, copia-like retrotransposon family, has a 2.0e-09 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At2g19146	chr2:008304029	0.0	W/8304029-8304316	AT2G19146.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G60720.1); Has 20 Blast hits to 20 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G19146.1p  transcript_id AT2G19146.1  protein_id AT2G19146.1p  transcript_id AT2G19146.1  
At2g19150	chr2:008305100	0.0	W/8305100-8305335,8305465-8305624,8306462-8306668,8306924-8307174,8307279-8307444	AT2G19150.1  CDS  gene_syn T20K24.17, T20K24_17  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase (TAIR:AT2G47280.1); Has 1182 Blast hits to 1159 proteins in 172 species: Archae - 0; Bacteria - 239; Metazoa - 1; Fungi - 124; Plants - 818; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G19150.1p  transcript_id AT2G19150.1  protein_id AT2G19150.1p  transcript_id AT2G19150.1  
At2g19160	chr2:008310921	0.0	W/8310921-8311304,8311602-8311700,8311883-8311983,8312067-8312138,8312247-8312337,8312719-8312799,8312923-8312985,8313082-8313204,8313309-8313347,8313464-8313595	AT2G19160.1  CDS  gene_syn T20K24.18, T20K24_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF266, plant (InterPro:IPR004949); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30060.1); Has 337 Blast hits to 337 proteins in 13 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 306; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT2G19160.1p  transcript_id AT2G19160.1  protein_id AT2G19160.1p  transcript_id AT2G19160.1  
At2g19170	chr2:008317454	0.0	C/8317454-8317620,8317092-8317236,8316618-8317012,8316440-8316535,8316282-8316354,8315772-8316057,8315355-8315680,8315011-8315278,8314646-8314927,8314154-8314563	AT2G19170.1  CDS  gene_syn SLP3, SUBTILISIN-LIKE SERINE PROTEASE 3, T20K24.19, T20K24_19  gene SLP3  function Encodes a novel subtilisin-like serine protease.  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_component middle lamella-containing extracellular matrix|GO:0048196|12702015|ISS  go_process proteolysis|GO:0006508||ISS  go_function serine-type peptidase activity|GO:0008236|12702015|ISS  product SLP3; serine-type peptidase  note SLP3; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: middle lamella-containing extracellular matrix; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8A, DUF1034 C-terminal (InterPro:IPR010435), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT4G30020.1); Has 4660 Blast hits to 4050 proteins in 725 species: Archae - 112; Bacteria - 2715; Metazoa - 71; Fungi - 269; Plants - 877; Viruses - 0; Other Eukaryotes - 616 (source: NCBI BLink).  protein_id AT2G19170.1p  transcript_id AT2G19170.1  protein_id AT2G19170.1p  transcript_id AT2G19170.1  
At2g19180	chr2:008324742	0.0	W/8324742-8325147,8325442-8325575	AT2G19180.1  CDS  gene_syn T20K24.20, T20K24_20  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 44 Blast hits to 44 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G19180.1p  transcript_id AT2G19180.1  protein_id AT2G19180.1p  transcript_id AT2G19180.1  
At2g19190	chr2:008329809	0.0	C/8329809-8329893,8329068-8329614,8328507-8328988,8328281-8328422,8328099-8328170,8327944-8328015,8327770-8327850,8327474-8327634,8327205-8327413,8326996-8327122,8326846-8326908,8326558-8326747,8326067-8326466	AT2G19190.1  CDS  gene_syn FLG22-INDUCED RECEPTOR-LIKE KINASE 1, FRK1, T20K24.21, T20K24_21  gene FRK1  function Receptor-like protein kinase. Involved in early defense signaling.  go_component endomembrane system|GO:0012505||IEA  go_process defense response to bacterium|GO:0042742|16678099|IDA  go_function kinase activity|GO:0016301||ISS  product FRK1 (FLG22-INDUCED RECEPTOR-LIKE KINASE 1); kinase  note FLG22-INDUCED RECEPTOR-LIKE KINASE 1 (FRK1); FUNCTIONS IN: kinase activity; INVOLVED IN: defense response to bacterium; LOCATED IN: endomembrane system; EXPRESSED IN: stem, sepal, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: light repressible receptor protein kinase (TAIR:AT4G29990.1); Has 110054 Blast hits to 92970 proteins in 3487 species: Archae - 64; Bacteria - 8416; Metazoa - 40559; Fungi - 7308; Plants - 36794; Viruses - 436; Other Eukaryotes - 16477 (source: NCBI BLink).  protein_id AT2G19190.1p  transcript_id AT2G19190.1  protein_id AT2G19190.1p  transcript_id AT2G19190.1  
At2g19200	chr2:008333218	0.0	W/8333218-8333335,8333511-8333588,8333938-8334044,8334184-8334621	AT2G19200.1  CDS  gene_syn T20K24.25, T20K24_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11700.1); Has 17 Blast hits to 17 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G19200.1p  transcript_id AT2G19200.1  protein_id AT2G19200.1p  transcript_id AT2G19200.1  
At2g19210	chr2:008339220	0.0	C/8339220-8339307,8338581-8339127,8338024-8338502,8337804-8337942,8337656-8337727,8337500-8337571,8337328-8337408,8337046-8337212,8336747-8336958,8336545-8336671,8336388-8336450,8336124-8336313,8335639-8336047	AT2G19210.1  CDS  gene_syn F27F23.1, F27F23_1  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat protein kinase, putative  note leucine-rich repeat protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: kinase (TAIR:AT2G19230.1); Has 112902 Blast hits to 88516 proteins in 3414 species: Archae - 50; Bacteria - 8001; Metazoa - 38820; Fungi - 6638; Plants - 43507; Viruses - 379; Other Eukaryotes - 15507 (source: NCBI BLink).  protein_id AT2G19210.1p  transcript_id AT2G19210.1  protein_id AT2G19210.1p  transcript_id AT2G19210.1  
At2g19220	chr2:008341880	0.0	C/8341880-8342161,8341283-8341789,8340678-8341208	AT2G19220.1  CDS  gene_syn F27F23.2, F27F23_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 229 Blast hits to 150 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 10; Plants - 219; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G19220.1p  transcript_id AT2G19220.1  protein_id AT2G19220.1p  transcript_id AT2G19220.1  
At2g19230	chr2:008348347	0.0	C/8348347-8348431,8347709-8348255,8347153-8347637,8346932-8347070,8346784-8346855,8346622-8346693,8346456-8346536,8346183-8346340,8345900-8346099,8345691-8345817,8345543-8345605,8345270-8345459,8344763-8345176,8343951-8344128,8343810-8343882,8343711-8343748,8343452-8343607	AT2G19230.1  CDS  gene_syn F27F23.3, F27F23_3  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function kinase activity|GO:0016301||ISS  product kinase  note kinase; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT2G19210.1); Has 109940 Blast hits to 95327 proteins in 3926 species: Archae - 62; Bacteria - 8463; Metazoa - 42320; Fungi - 7469; Plants - 34430; Viruses - 451; Other Eukaryotes - 16745 (source: NCBI BLink).  protein_id AT2G19230.1p  transcript_id AT2G19230.1  protein_id AT2G19230.1p  transcript_id AT2G19230.1  
At2g19240	chr2:008352381	0.0	C/8352381-8352562,8352134-8352222,8351628-8351804,8349462-8351380,8349048-8349203	AT2G19240.1  CDS  gene_syn F27F23.4, F27F23_4  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of Rab GTPase activity|GO:0032313||IEA  go_function RAB GTPase activator activity|GO:0005097||IEA  product RabGAP/TBC domain-containing protein  note RabGAP/TBC domain-containing protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular, chloroplast; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: microtubule-associated protein (TAIR:AT4G29950.1); Has 1203 Blast hits to 976 proteins in 162 species: Archae - 0; Bacteria - 13; Metazoa - 520; Fungi - 197; Plants - 140; Viruses - 0; Other Eukaryotes - 333 (source: NCBI BLink).  protein_id AT2G19240.1p  transcript_id AT2G19240.1  protein_id AT2G19240.1p  transcript_id AT2G19240.1  
At2g19250	chr2:008352686	0.0	W/8352686-8355700	AT2G19250.1  pseudogenic_transcript  pseudo  gene_syn F27F23.5, F27F23_5  note pseudogene, similar to Magnesium-chelatase subunit chlD, chloroplast precursor (Mg- protoporphyrin IX chelatase) (Mg-chelatase subunit D). (Common tobacco), similar to SP|O24133 Magnesium-chelatase subunit chlD, chloroplast precursor (Mg-protoporphyrin IX chelatase) (Mg-chelatase subunit D) {Nicotiana tabacum}; blastp match of 78% identity and 5.0e-07 P-value to SP|O24133|CHLD_TOBAC Magnesium-chelatase subunit chlD, chloroplast precursor (Mg- protoporphyrin IX chelatase) (Mg-chelatase subunit D). (Common tobacco) {Nicotiana tabacum}  
At2g19260	chr2:008357331	0.0	W/8357331-8358847,8358995-8359049,8359140-8359243,8359396-8359486,8359709-8359756,8359851-8359931	AT2G19260.1  CDS  gene_syn F27F23.6, F27F23_6  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product ELM2 domain-containing protein / PHD finger family protein  note ELM2 domain-containing protein / PHD finger family protein; FUNCTIONS IN: protein binding, DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: ELM2 (InterPro:IPR000949), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, CW-type (InterPro:IPR011124); Has 1406 Blast hits to 1356 proteins in 128 species: Archae - 2; Bacteria - 6; Metazoa - 1018; Fungi - 96; Plants - 178; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).  protein_id AT2G19260.1p  transcript_id AT2G19260.1  protein_id AT2G19260.1p  transcript_id AT2G19260.1  
At2g19270	chr2:008360993	0.0	C/8360993-8361907,8360349-8360513	AT2G19270.1  CDS  gene_syn F27F23.7, F27F23_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitotic checkpoint protein PRCC, C-terminal (InterPro:IPR018800); Has 1029 Blast hits to 488 proteins in 117 species: Archae - 0; Bacteria - 14; Metazoa - 432; Fungi - 124; Plants - 39; Viruses - 0; Other Eukaryotes - 420 (source: NCBI BLink).  protein_id AT2G19270.1p  transcript_id AT2G19270.1  protein_id AT2G19270.1p  transcript_id AT2G19270.1  
At2g19280	chr2:008362672	0.0	W/8362672-8364753	AT2G19280.1  CDS  gene_syn F27F23.8, F27F23_8  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT1G05670.2); Has 21273 Blast hits to 5843 proteins in 180 species: Archae - 3; Bacteria - 22; Metazoa - 587; Fungi - 472; Plants - 19343; Viruses - 0; Other Eukaryotes - 846 (source: NCBI BLink).  protein_id AT2G19280.1p  transcript_id AT2G19280.1  protein_id AT2G19280.1p  transcript_id AT2G19280.1  
At2g19290	chr2:008366890	0.0	C/8366890-8367022,8365919-8366013	AT2G19290.1  CDS  gene_syn F27F23.9, F27F23_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G19290.1p  transcript_id AT2G19290.1  protein_id AT2G19290.1p  transcript_id AT2G19290.1  
At2g19300	chr2:008368040	0.0	C/8368040-8368219	AT2G19300.1  CDS  gene_syn F27F23.10, F27F23_10  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G19300.1p  transcript_id AT2G19300.1  protein_id AT2G19300.1p  transcript_id AT2G19300.1  
At2g19310	chr2:008369892	0.0	C/8369892-8370380	AT2G19310.1  CDS  gene_syn F27F23.11, F27F23_11  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_process response to heat|GO:0009408|17059409|IEP  go_process response to high light intensity|GO:0009644|17059409|IEP  go_process response to hydrogen peroxide|GO:0042542|17059409|IEP  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress, response to high light intensity, response to hydrogen peroxide, response to heat; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP18.2 (heat shock protein 18.2) (TAIR:AT5G59720.1); Has 527 Blast hits to 527 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 34; Plants - 479; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT2G19310.1p  transcript_id AT2G19310.1  protein_id AT2G19310.1p  transcript_id AT2G19310.1  
At2g19320	chr2:008370864	0.0	C/8370864-8371097	AT2G19320.1  CDS  gene_syn F27F23.12, F27F23_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G19320.1p  transcript_id AT2G19320.1  protein_id AT2G19320.1p  transcript_id AT2G19320.1  
At2g19330	chr2:008372947	0.0	W/8372947-8373234,8373508-8373677,8373769-8374453	AT2G19330.1  CDS  gene_syn F27F23.13, F27F23_13  go_component chloroplast|GO:0009507||IEA  go_function protein binding|GO:0005515||IEA  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: protein binding (TAIR:AT4G29880.1); Has 46478 Blast hits to 20229 proteins in 760 species: Archae - 34; Bacteria - 4460; Metazoa - 24010; Fungi - 1473; Plants - 13506; Viruses - 21; Other Eukaryotes - 2974 (source: NCBI BLink).  protein_id AT2G19330.1p  transcript_id AT2G19330.1  protein_id AT2G19330.1p  transcript_id AT2G19330.1  
At2g19340	chr2:008375274	0.0	C/8375274-8375795	AT2G19340.2  CDS  gene_syn F27F23.14, F27F23_14  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product membrane protein, putative  note membrane protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29870.1); Has 163 Blast hits to 163 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 127; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT2G19340.2p  transcript_id AT2G19340.2  protein_id AT2G19340.2p  transcript_id AT2G19340.2  
At2g19340	chr2:008375318	0.0	C/8375318-8375795,8374313-8374437	AT2G19340.1  CDS  gene_syn F27F23.14, F27F23_14  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product membrane protein, putative  note membrane protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29870.1); Has 163 Blast hits to 163 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 127; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT2G19340.1p  transcript_id AT2G19340.1  protein_id AT2G19340.1p  transcript_id AT2G19340.1  
At2g19350	chr2:008376329	0.0	W/8376329-8376518,8376976-8377097	AT2G19350.1  CDS  gene_syn F27F23.15, F27F23_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0414 (InterPro:IPR008590); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29850.1); Has 189 Blast hits to 189 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 142; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G19350.1p  transcript_id AT2G19350.1  protein_id AT2G19350.1p  transcript_id AT2G19350.1  
At2g19360	chr2:008378664	0.0	W/8378664-8378816,8378927-8379013,8379230-8379472,8379556-8379703,8382440-8382510,8382600-8382653,8382760-8382906,8382997-8383374	AT2G19360.1  CDS  gene_syn F27F23.16, F27F23_16  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17750.1); Has 428 Blast hits to 395 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 10; Plants - 414; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G19360.1p  transcript_id AT2G19360.1  protein_id AT2G19360.1p  transcript_id AT2G19360.1  
At2g19380	chr2:008383856	0.0	W/8383856-8383942,8384030-8384104,8384202-8384302,8384423-8384629,8384757-8384966,8385443-8386604	AT2G19380.1  CDS  gene_syn F27F23.27  go_component intracellular|GO:0005622||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2, LYAR-type (InterPro:IPR014898), RNA recognition motif, RNP-1 (InterPro:IPR000504), Zinc finger, U1-type (InterPro:IPR003604), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT2G22100.1); Has 12850 Blast hits to 10717 proteins in 556 species: Archae - 0; Bacteria - 638; Metazoa - 7561; Fungi - 1405; Plants - 1811; Viruses - 2; Other Eukaryotes - 1433 (source: NCBI BLink).  protein_id AT2G19380.1p  transcript_id AT2G19380.1  protein_id AT2G19380.1p  transcript_id AT2G19380.1  
At2g19385	chr2:008387149	0.0	W/8387149-8387235,8387330-8387404,8387517-8387647,8387855-8388218,8388312-8388419,8388519-8388581	AT2G19385.1  CDS  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2, LYAR-type (InterPro:IPR014898); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT2G19380.1); Has 443 Blast hits to 397 proteins in 133 species: Archae - 0; Bacteria - 6; Metazoa - 196; Fungi - 75; Plants - 41; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).  protein_id AT2G19385.1p  transcript_id AT2G19385.1  protein_id AT2G19385.1p  transcript_id AT2G19385.1  
At2g19390	chr2:008396080	0.0	C/8396080-8396477,8395751-8396003,8394934-8395229,8394156-8394338,8393234-8393992,8393031-8393128,8392877-8392936,8392706-8392794,8391778-8392224,8391606-8391680,8391336-8391406,8391181-8391238,8390852-8391074,8390136-8390761	AT2G19390.1  CDS  gene_syn F27F23.19, F27F23_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29790.1); Has 153 Blast hits to 137 proteins in 45 species: Archae - 0; Bacteria - 9; Metazoa - 30; Fungi - 25; Plants - 53; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT2G19390.1p  transcript_id AT2G19390.1  protein_id AT2G19390.1p  transcript_id AT2G19390.1  
At2g19400	chr2:008402303	0.0	C/8402303-8402481,8401920-8402094,8401749-8401832,8401419-8401660,8401096-8401339,8400891-8400970,8400611-8400695,8400295-8400432,8400097-8400210,8399979-8400026,8399794-8399878,8399652-8399702,8399523-8399581	AT2G19400.1  CDS  gene_syn F27F23.20, F27F23_20  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase, C-terminal (InterPro:IPR017892), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT4G33080.1); Has 75779 Blast hits to 74384 proteins in 1996 species: Archae - 56; Bacteria - 7119; Metazoa - 32098; Fungi - 7491; Plants - 13145; Viruses - 372; Other Eukaryotes - 15498 (source: NCBI BLink).  protein_id AT2G19400.1p  transcript_id AT2G19400.1  protein_id AT2G19400.1p  transcript_id AT2G19400.1  
At2g19410	chr2:008408790	0.0	C/8408790-8409012,8408242-8408414,8407832-8407970,8407547-8407660,8406883-8407157,8406692-8406793,8406035-8406463,8405198-8405947,8404901-8405101	AT2G19410.1  CDS  gene_syn F27F23.21, F27F23_21  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ ubiquitin-protein ligase (TAIR:AT5G57035.1); Has 85426 Blast hits to 84436 proteins in 3244 species: Archae - 64; Bacteria - 7965; Metazoa - 36908; Fungi - 6593; Plants - 19016; Viruses - 336; Other Eukaryotes - 14544 (source: NCBI BLink).  protein_id AT2G19410.1p  transcript_id AT2G19410.1  protein_id AT2G19410.1p  transcript_id AT2G19410.1  
At2g19420	chr2:008411701	0.0	W/8411701-8411719,8412222-8412332,8413579-8413883	AT2G19420.1  CDS  gene_syn F27F23.26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G19420.1p  transcript_id AT2G19420.1  protein_id AT2G19420.1p  transcript_id AT2G19420.1  
At2g19425	chr2:008412516	0.0	C/8412516-8412618	AT2G19425.1  miRNA  gene_syn MICRORNA156G, MIR156G  gene MIR156G  function Encodes a microRNA that targets several SPL family members, including SPL3,4, and 5. By regulating the expression of SPL3 (and probably also SPL4 and SPL5), this microRNA regulates vegetative phase change. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: CGACAGAAGAGAGUGAGCAC  product MIR156G (MICRORNA156G); miRNA  transcript_id AT2G19425.1  
At2g19430	chr2:008415217	0.0	W/8415217-8415542,8415630-8415706,8415788-8415833,8415961-8416021,8416110-8416163,8416254-8416334,8416426-8416465,8416738-8416838,8417011-8417121,8417378-8417494,8417651-8417740	AT2G19430.1  CDS  gene_syn F27F23.25  function This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase.  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|IPI  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  go_function protein binding|GO:0005515|18223036|IPI  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G49660.1); Has 18556 Blast hits to 10491 proteins in 459 species: Archae - 52; Bacteria - 3178; Metazoa - 8053; Fungi - 3634; Plants - 1316; Viruses - 0; Other Eukaryotes - 2323 (source: NCBI BLink).  protein_id AT2G19430.1p  transcript_id AT2G19430.1  protein_id AT2G19430.1p  transcript_id AT2G19430.1  
At2g19440	chr2:008419484	0.0	C/8419484-8419806,8418845-8419344,8418164-8418777	AT2G19440.1  CDS  gene_syn F27F23.28  go_component plasma membrane|GO:0005886|14506206|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT1G64760.2); Has 1677 Blast hits to 1627 proteins in 125 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 28; Plants - 1635; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT2G19440.1p  transcript_id AT2G19440.1  protein_id AT2G19440.1p  transcript_id AT2G19440.1  
At2g19450	chr2:008426436	0.0	W/8426436-8426825,8426910-8426990,8427082-8427155,8427258-8427333,8427431-8427498,8427580-8427703,8427784-8427861,8427940-8428041,8428142-8428278,8428423-8428504,8428609-8428629,8428714-8428776,8428860-8428907,8429031-8429093,8429175-8429225,8429351-8429455	AT2G19450.1  CDS  gene_syn ABX45, AS11, ATDGAT, DGAT1, DIACYLGLYCEROL ACYLTRANSFERASE, F27F23.24, RDS1, TAG1, TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1  gene TAG1  function Encodes Acyl-CoA:diacylglycerol acyltransferase (DGAT) catalyzes the final step of the triacylglycerol synthesis pathway. An insertion mutation in the TAG1 gene results in altered lipid phenotype. Role in senescence and seed development.  go_component chloroplast envelope|GO:0009941|12177474|IDA  go_component membrane|GO:0016020|10601854|TAS  go_process carbohydrate metabolic process|GO:0005975|12114588|IMP  go_process aging|GO:0007568|12177474|IEP  go_process response to cold|GO:0009409|12114588|IMP  go_process response to salt stress|GO:0009651|12114588|IMP  go_process response to abscisic acid stimulus|GO:0009737|12114588|IMP  go_process response to glucose stimulus|GO:0009749|12114588|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|12114588|TAS  go_process regulation of seed germination|GO:0010029||IMP  go_process positive regulation of seed germination|GO:0010030||IMP  go_process triglyceride biosynthetic process|GO:0019432|10601854|TAS  go_process triglyceride biosynthetic process|GO:0019432|11402213|IMP  go_process triglyceride biosynthetic process|GO:0019432|12114588|TAS  go_process regulation of embryonic development|GO:0045995|11402213|IMP  go_function diacylglycerol O-acyltransferase activity|GO:0004144|10386579|IDA  go_function diacylglycerol O-acyltransferase activity|GO:0004144|10571850|IDA  go_function diacylglycerol O-acyltransferase activity|GO:0004144|10571850|ISS  go_function diacylglycerol O-acyltransferase activity|GO:0004144|10601854|IMP  go_function diacylglycerol O-acyltransferase activity|GO:0004144|12502715|IDA  product TAG1 (TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1); diacylglycerol O-acyltransferase  note TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1 (TAG1); FUNCTIONS IN: diacylglycerol O-acyltransferase activity; INVOLVED IN: in 11 processes; LOCATED IN: chloroplast envelope, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Membrane bound O-acyl transferase, MBOAT (InterPro:IPR004299); Has 728 Blast hits to 723 proteins in 206 species: Archae - 0; Bacteria - 71; Metazoa - 284; Fungi - 207; Plants - 55; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).  protein_id AT2G19450.1p  transcript_id AT2G19450.1  protein_id AT2G19450.1p  transcript_id AT2G19450.1  
At2g19460	chr2:008431581	0.0	W/8431581-8431931	AT2G19460.1  CDS  gene_syn F27F23.23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11970.1); Has 121 Blast hits to 121 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G19460.1p  transcript_id AT2G19460.1  protein_id AT2G19460.1p  transcript_id AT2G19460.1  
At2g19470	chr2:008436220	0.0	C/8436220-8436295,8436108-8436148,8435969-8436038,8435740-8435888,8435571-8435666,8435415-8435485,8435240-8435301,8435083-8435146,8434919-8435003,8434683-8434809,8434505-8434587,8434346-8434409,8434162-8434250,8433851-8434075	AT2G19470.1  CDS  gene_syn Casein Kinase I-like 5, F3P11.7, F3P11_7, ckl5  gene ckl5  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cytoplasm|GO:0005737|16126836|IDA  go_function kinase activity|GO:0016301||ISS  product ckl5 (Casein Kinase I-like 5); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note Casein Kinase I-like 5 (ckl5); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT1G72710.1); Has 51956 Blast hits to 51628 proteins in 1482 species: Archae - 15; Bacteria - 6117; Metazoa - 22628; Fungi - 4795; Plants - 7219; Viruses - 392; Other Eukaryotes - 10790 (source: NCBI BLink).  protein_id AT2G19470.1p  transcript_id AT2G19470.1  protein_id AT2G19470.1p  transcript_id AT2G19470.1  
At2g19480	chr2:008438601	0.0	W/8438601-8438646,8438751-8438794,8439023-8439118,8439248-8439340,8439563-8439650,8439755-8439816,8439899-8440083,8440167-8440344,8440432-8440475,8440559-8440775,8440872-8440889,8440972-8441040	AT2G19480.1  CDS  gene_syn F3P11.8, F3P11_8, NAP1;2, NFA02, NFA2, NUCLEOSOME ASSEMBLY PROTEIN 1;2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2  gene NAP1;2  function This gene is predicted to encode a nucleosome assembly protein. Plant lines expressing an RNAi construct directed against this gene show a reduction in agrobacterium-mediated root transformation.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component nucleus|GO:0005634|19228338|IDA  go_component nucleus|GO:0005634||ISS  go_component cytoplasm|GO:0005737|19228338|IDA  go_process DNA repair|GO:0006281|19228338|IGI  go_process nucleosome assembly|GO:0006334||ISS  go_process DNA mediated transformation|GO:0009294|17827277|IMP  go_function DNA binding|GO:0003677||ISS  product NAP1;2 (NUCLEOSOME ASSEMBLY PROTEIN 1;2); DNA binding  note NUCLEOSOME ASSEMBLY PROTEIN 1;2 (NAP1;2); FUNCTIONS IN: DNA binding; INVOLVED IN: DNA repair, response to cadmium ion, DNA mediated transformation, nucleosome assembly; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleosome assembly protein (NAP) (InterPro:IPR002164); BEST Arabidopsis thaliana protein match is: NAP1;3 (NUCLEOSOME ASSEMBLY PROTEIN 1;3); DNA binding (TAIR:AT5G56950.1); Has 63814 Blast hits to 19299 proteins in 904 species: Archae - 159; Bacteria - 25813; Metazoa - 17073; Fungi - 5795; Plants - 2394; Viruses - 571; Other Eukaryotes - 12009 (source: NCBI BLink).  protein_id AT2G19480.1p  transcript_id AT2G19480.1  protein_id AT2G19480.1p  transcript_id AT2G19480.1  
At2g19480	chr2:008438601	0.0	W/8438601-8438646,8438751-8438794,8439023-8439118,8439248-8439340,8439563-8439650,8439755-8439816,8439899-8440083,8440167-8440344,8440432-8440475,8440559-8440775,8440972-8441040	AT2G19480.2  CDS  gene_syn F3P11.8, F3P11_8, NAP1;2, NFA02, NFA2, NUCLEOSOME ASSEMBLY PROTEIN 1;2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2  gene NAP1;2  function This gene is predicted to encode a nucleosome assembly protein. Plant lines expressing an RNAi construct directed against this gene show a reduction in agrobacterium-mediated root transformation.  go_component plasma membrane|GO:0005886|17317660|IDA  go_function binding|GO:0005488||IEA  go_component nucleus|GO:0005634|19228338|IDA  go_component nucleus|GO:0005634||ISS  go_component cytoplasm|GO:0005737|19228338|IDA  go_process DNA repair|GO:0006281|19228338|IGI  go_process nucleosome assembly|GO:0006334||ISS  go_process DNA mediated transformation|GO:0009294|17827277|IMP  go_function DNA binding|GO:0003677||ISS  product NAP1;2 (NUCLEOSOME ASSEMBLY PROTEIN 1;2); DNA binding / binding  note NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02 (NFA02); FUNCTIONS IN: binding, DNA binding; INVOLVED IN: DNA repair, DNA mediated transformation, nucleosome assembly; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), Nucleosome assembly protein (NAP) (InterPro:IPR002164); BEST Arabidopsis thaliana protein match is: NAP1;3 (NUCLEOSOME ASSEMBLY PROTEIN 1;3); DNA binding (TAIR:AT5G56950.1); Has 61786 Blast hits to 19138 proteins in 896 species: Archae - 148; Bacteria - 23431; Metazoa - 17486; Fungi - 5749; Plants - 2312; Viruses - 601; Other Eukaryotes - 12059 (source: NCBI BLink).  protein_id AT2G19480.2p  transcript_id AT2G19480.2  protein_id AT2G19480.2p  transcript_id AT2G19480.2  
At2g19490	chr2:008441732	0.0	W/8441732-8441788,8441972-8442029,8442220-8442437,8442604-8442691,8442775-8442947,8443048-8443194,8443284-8443418,8443590-8444006	AT2G19490.1  CDS  gene_syn F3P11.9, F3P11_9  go_process DNA metabolic process|GO:0006259||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function DNA binding|GO:0003677||IEA  go_function ATP binding|GO:0005524||IEA  go_function DNA-dependent ATPase activity|GO:0008094||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process DNA repair|GO:0006281||ISS  go_process DNA recombination|GO:0006310||ISS  go_process SOS response|GO:0009432||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA-dependent ATPase activity|GO:0008094||ISS  product recA family protein  note recA family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: DNA repair, SOS response, DNA recombination, DNA metabolic process; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), RecA (InterPro:IPR013765), RecA bacterial DNA recombination (InterPro:IPR001553); BEST Arabidopsis thaliana protein match is: RECA3 (recA homolog 3); ATP binding / DNA binding / DNA-dependent ATPase/ nucleoside-triphosphatase/ nucleotide binding (TAIR:AT3G10140.1); Has 14230 Blast hits to 14142 proteins in 3374 species: Archae - 267; Bacteria - 9336; Metazoa - 98; Fungi - 140; Plants - 147; Viruses - 71; Other Eukaryotes - 4171 (source: NCBI BLink).  protein_id AT2G19490.1p  transcript_id AT2G19490.1  protein_id AT2G19490.1p  transcript_id AT2G19490.1  
At2g19500	chr2:008446743	0.0	C/8446743-8447301,8446125-8446252,8445103-8445360,8444686-8444954,8444311-8444602	AT2G19500.1  CDS  gene_syn ATCKX2, CKX2, CYTOKININ OXIDASE 2, F3P11.10, F3P11_10  gene CKX2  function It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.  go_component endoplasmic reticulum lumen|GO:0005788|14555694|IDA  go_process cytokinin catabolic process|GO:0009823|11154286|TAS  go_process cytokinin catabolic process|GO:0009823||ISS  go_function amine oxidase activity|GO:0008131|11154286|IDA  go_function cytokinin dehydrogenase activity|GO:0019139|14555694|IMP  go_function cytokinin dehydrogenase activity|GO:0019139||ISS  product CKX2 (CYTOKININ OXIDASE 2); amine oxidase/ cytokinin dehydrogenase  note CYTOKININ OXIDASE 2 (CKX2); FUNCTIONS IN: cytokinin dehydrogenase activity, amine oxidase activity; INVOLVED IN: cytokinin catabolic process; LOCATED IN: endoplasmic reticulum lumen; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytokinin dehydrogenase 1, FAD and cytokinin binding (InterPro:IPR015345), FAD-binding, type 2 (InterPro:IPR016166), Oxygen oxidoreductase covalent FAD-binding site (InterPro:IPR006093), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: CKX4 (CYTOKININ OXIDASE 4); amine oxidase/ cytokinin dehydrogenase (TAIR:AT4G29740.2); Has 4295 Blast hits to 4292 proteins in 766 species: Archae - 85; Bacteria - 2214; Metazoa - 96; Fungi - 954; Plants - 340; Viruses - 0; Other Eukaryotes - 606 (source: NCBI BLink).  protein_id AT2G19500.1p  transcript_id AT2G19500.1  protein_id AT2G19500.1p  transcript_id AT2G19500.1  
At2g19510	chr2:008453230	0.0	W/8453230-8453330,8453415-8453676	AT2G19510.1  CDS  gene_syn F3P11.11, F3P11_11, LBD8, LOB DOMAIN-CONTAINING PROTEIN 8  gene LBD8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product LBD8 (LOB DOMAIN-CONTAINING PROTEIN 8)  note LOB DOMAIN-CONTAINING PROTEIN 8 (LBD8); INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD5 (LOB DOMAIN-CONTAINING PROTEIN 5) (TAIR:AT1G36000.1); Has 394 Blast hits to 392 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 394; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G19510.1p  transcript_id AT2G19510.1  protein_id AT2G19510.1p  transcript_id AT2G19510.1  
At2g19520	chr2:008456006	0.0	W/8456006-8456289,8456645-8456708,8456802-8456888,8456998-8457060,8457234-8457299,8457444-8457518,8457656-8457731,8457805-8458000,8458111-8458192,8458273-8458346,8458421-8458532,8458618-8458692,8458797-8458864,8458949-8459048,8459134-8459235	AT2G19520.1  CDS  gene_syn ACG1, ATMSI4, F3P11.12, F3P11_12, FVE, MSI4, MULTICOPY SUPPRESSOR OF IRA1 4, NFC04, NFC4, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C, WD-40 REPEAT PROTEIN MSI4  gene FVE  function Controls flowering.  go_component nucleolus|GO:0005730|15496452|IDA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process unidimensional cell growth|GO:0009826||IMP  go_process flower development|GO:0009908||IMP  go_process leaf morphogenesis|GO:0009965||IMP  go_process trichome morphogenesis|GO:0010090||IMP  go_function metal ion binding|GO:0046872|9872415|IDA  product FVE; metal ion binding  note FVE; FUNCTIONS IN: metal ion binding; INVOLVED IN: flower development, trichome morphogenesis, unidimensional cell growth, leaf morphogenesis; LOCATED IN: nucleolus, nucleus, CUL4 RING ubiquitin ligase complex, cytoplasm; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: NFC5 (Nucleosome/chromatin assembly factor group C 5) (TAIR:AT4G29730.1); Has 20480 Blast hits to 14017 proteins in 506 species: Archae - 14; Bacteria - 2318; Metazoa - 9547; Fungi - 4052; Plants - 1921; Viruses - 0; Other Eukaryotes - 2628 (source: NCBI BLink).  protein_id AT2G19520.1p  transcript_id AT2G19520.1  protein_id AT2G19520.1p  transcript_id AT2G19520.1  
At2g19530	chr2:008460219	0.0	W/8460219-8460321,8460981-8461486	AT2G19530.1  CDS  gene_syn F3P11.13, F3P11_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55160.3); Has 429 Blast hits to 312 proteins in 69 species: Archae - 0; Bacteria - 13; Metazoa - 95; Fungi - 25; Plants - 27; Viruses - 0; Other Eukaryotes - 269 (source: NCBI BLink).  protein_id AT2G19530.1p  transcript_id AT2G19530.1  protein_id AT2G19530.1p  transcript_id AT2G19530.1  
At2g19540	chr2:008461804	0.0	W/8461804-8461845,8461963-8462117,8462330-8462408,8462488-8462667,8462776-8462874,8462968-8463136,8463225-8463328,8463411-8463550,8463642-8463714,8463799-8463914,8464002-8464119,8464213-8464347	AT2G19540.1  CDS  gene_syn F3P11.14, F3P11_14  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: MSI2 (MULTICOPY SUPPRESSOR OF IRA1 2) (TAIR:AT2G16780.1); Has 15889 Blast hits to 11352 proteins in 415 species: Archae - 2; Bacteria - 1006; Metazoa - 7280; Fungi - 3371; Plants - 2046; Viruses - 0; Other Eukaryotes - 2184 (source: NCBI BLink).  protein_id AT2G19540.1p  transcript_id AT2G19540.1  protein_id AT2G19540.1p  transcript_id AT2G19540.1  
At2g19550	chr2:008464533	0.0	C/8464533-8465531	AT2G19550.1  CDS  gene_syn F3P11.15, F3P11_15  go_function catalytic activity|GO:0003824||ISS  product esterase/lipase/thioesterase family protein  note esterase/lipase/thioesterase family protein; FUNCTIONS IN: catalytic activity; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: esterase/lipase/thioesterase family protein (TAIR:AT3G47590.1); Has 1858 Blast hits to 1857 proteins in 359 species: Archae - 15; Bacteria - 701; Metazoa - 27; Fungi - 38; Plants - 116; Viruses - 7; Other Eukaryotes - 954 (source: NCBI BLink).  protein_id AT2G19550.1p  transcript_id AT2G19550.1  protein_id AT2G19550.1p  transcript_id AT2G19550.1  
At2g19560	chr2:008468902	0.0	C/8468902-8469069,8468161-8468297,8467949-8468042,8467753-8467842,8467588-8467653,8467411-8467500,8467265-8467321,8467103-8467164,8466933-8467020,8466743-8466819,8466333-8466407,8466155-8466260,8465924-8466055	AT2G19560.1  CDS  gene_syn EER5, ENHANCED ETHYLENE RESPONSE 5, F3P11.16, F3P11_16  gene EER5  function encodes a protein with a PAM domain involved in ethylene signaling. eer5 mutants show ethylene hypersensitivity in relation to hypocotyl elongation. EER5 interacts with EIN2 and with COP9 in Y2H assays. EIN3 protein levels are the same in WT and eer5-1 mutants. EER5 may be involved in promoting a dampening of the ethylene response.  go_component cellular_component|GO:0005575||ND  go_process response to ethylene stimulus|GO:0009723|18429939|IMP  go_process ethylene mediated signaling pathway|GO:0009873|18429939|IPI  go_process root development|GO:0048364|18429939|IMP  go_function molecular_function|GO:0003674||ND  product EER5 (ENHANCED ETHYLENE RESPONSE 5)  note ENHANCED ETHYLENE RESPONSE 5 (EER5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to ethylene stimulus, ethylene mediated signaling pathway, root development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component region PCI (InterPro:IPR000717), PCI/PINT associated module (InterPro:IPR013143); Has 570 Blast hits to 569 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 223; Fungi - 210; Plants - 33; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT2G19560.1p  transcript_id AT2G19560.1  protein_id AT2G19560.1p  transcript_id AT2G19560.1  
At2g19570	chr2:008470598	0.0	C/8470598-8471503	AT2G19570.1  CDS  gene_syn AT-CDA1, CDA1, CYTIDINE DEAMINASE 1, DESZ, F3P11.17, F3P11_17  gene CDA1  function Encodes a cytidine deaminase that deaminates cytidine and deoxycytidine and is competitively inhibited by cytosine-containing compounds.  go_component cytosol|GO:0005829|10024464|ISS  go_process cytidine deamination|GO:0009972|10024464|IDA  go_function cytidine deaminase activity|GO:0004126|10024464|IDA  product CDA1 (CYTIDINE DEAMINASE 1); cytidine deaminase  note CYTIDINE DEAMINASE 1 (CDA1); FUNCTIONS IN: cytidine deaminase activity; INVOLVED IN: cytidine deamination; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cytidine deaminase, homodimeric (InterPro:IPR006263), APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), Cytidine deaminase-like (InterPro:IPR016193), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine and deoxycytidylate deaminase, zinc-binding region (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: cytidine deaminase, putative / cytidine aminohydrolase, putative (TAIR:AT4G29610.1); Has 1527 Blast hits to 1450 proteins in 562 species: Archae - 26; Bacteria - 1028; Metazoa - 90; Fungi - 30; Plants - 81; Viruses - 0; Other Eukaryotes - 272 (source: NCBI BLink).  protein_id AT2G19570.1p  transcript_id AT2G19570.1  protein_id AT2G19570.1p  transcript_id AT2G19570.1  
At2g19582	chr2:008474446	0.0	W/8474446-8475221	AT2G19582.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G19580  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G19582.1  
At2g19580	chr2:008474828	0.0	C/8474828-8475021,8474436-8474742,8472393-8472704	AT2G19580.1  CDS  gene_syn F3P11.18, F3P11_18, TET2, TETRASPANIN2  gene TET2  function Member of TETRASPANIN family  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process aging|GO:0007568||ISS  go_function molecular_function|GO:0003674||ND  product TET2 (TETRASPANIN2)  note TETRASPANIN2 (TET2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499), Tetraspanin, subgroup (InterPro:IPR000301); BEST Arabidopsis thaliana protein match is: TRN2 (TORNADO 2) (TAIR:AT5G46700.1); Has 256 Blast hits to 256 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 39; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT2G19580.1p  transcript_id AT2G19580.1  protein_id AT2G19580.1p  transcript_id AT2G19580.1  
At2g19590	chr2:008477229	0.0	C/8477229-8477354,8476925-8477145,8476239-8476824	AT2G19590.1  CDS  gene_syn ACC OXIDASE 1, ACO1, F3P11.19, F3P11_19  gene ACO1  function encodes a protein whose sequence is similar to 1-aminocyclopropane-1-carboxylate oxidase  go_component cellular_component|GO:0005575||ND  go_process ethylene biosynthetic process|GO:0009693||NAS  go_function 1-aminocyclopropane-1-carboxylate oxidase activity|GO:0009815|8628251|ISS  product ACO1 (ACC OXIDASE 1); 1-aminocyclopropane-1-carboxylate oxidase  note ACC OXIDASE 1 (ACO1); FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate oxidase activity; INVOLVED IN: ethylene biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, leaf apex, hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative (TAIR:AT1G12010.1); Has 5317 Blast hits to 5301 proteins in 627 species: Archae - 0; Bacteria - 621; Metazoa - 73; Fungi - 478; Plants - 3048; Viruses - 0; Other Eukaryotes - 1097 (source: NCBI BLink).  protein_id AT2G19590.1p  transcript_id AT2G19590.1  protein_id AT2G19590.1p  transcript_id AT2G19590.1  
At2g19600	chr2:008479275	0.0	W/8479275-8479542,8479739-8479782,8479867-8479931,8480031-8480094,8480213-8480274,8480382-8480457,8480610-8480684,8480814-8480885,8480977-8481060,8481169-8481237,8481420-8481497,8481695-8481783,8481915-8482011,8482091-8482144,8482246-8482341,8482535-8482723,8482798-8482875,8483021-8483065,8483225-8483314,8483399-8483482	AT2G19600.1  CDS  gene_syn ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 4, ATKEA4, F3P11.20, F3P11_20, KEA4  gene ATKEA4  function member of Putative potassium proton antiporter family  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812||IEA  go_process potassium ion transport|GO:0006813||ISS  go_function potassium ion transmembrane transporter activity|GO:0015079||ISS  go_function potassium:hydrogen antiporter activity|GO:0015386|11500563|NAS  go_function potassium:hydrogen antiporter activity|GO:0015386||ISS  product ATKEA4; potassium ion transmembrane transporter/ potassium:hydrogen antiporter  note ATKEA4; FUNCTIONS IN: potassium:hydrogen antiporter activity, potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport, cation transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: KEA6; potassium ion transmembrane transporter/ potassium:hydrogen antiporter (TAIR:AT5G11800.1); Has 6195 Blast hits to 6191 proteins in 1197 species: Archae - 227; Bacteria - 4680; Metazoa - 61; Fungi - 44; Plants - 184; Viruses - 0; Other Eukaryotes - 999 (source: NCBI BLink).  protein_id AT2G19600.1p  transcript_id AT2G19600.1  protein_id AT2G19600.1p  transcript_id AT2G19600.1  
At2g19610	chr2:008484455	0.0	W/8484455-8484862,8484938-8485698,8485776-8485863	AT2G19610.2  CDS  gene_syn F3P11.21, F3P11_21  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: leaf whorl, cotyledon, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G07640.1); Has 2220 Blast hits to 2214 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 1141; Fungi - 381; Plants - 327; Viruses - 0; Other Eukaryotes - 371 (source: NCBI BLink).  protein_id AT2G19610.2p  transcript_id AT2G19610.2  protein_id AT2G19610.2p  transcript_id AT2G19610.2  
At2g19610	chr2:008484455	0.0	W/8484455-8484862,8484938-8485723	AT2G19610.1  CDS  gene_syn F3P11.21, F3P11_21  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: leaf whorl, cotyledon, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G07640.1); Has 1537 Blast hits to 1533 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 807; Fungi - 255; Plants - 224; Viruses - 0; Other Eukaryotes - 251 (source: NCBI BLink).  protein_id AT2G19610.1p  transcript_id AT2G19610.1  protein_id AT2G19610.1p  transcript_id AT2G19610.1  
At2g19620	chr2:008488000	0.0	C/8488000-8488002,8487801-8487900,8487604-8487701,8487408-8487496,8487244-8487304,8487051-8487137,8486888-8486965,8486751-8486807,8486463-8486654,8486131-8486352	AT2G19620.2  CDS  gene_syn F3P11.22, F3P11_22  go_component cellular_component|GO:0005575||ND  go_process cell differentiation|GO:0030154||ISS  go_function molecular_function|GO:0003674||ND  product Ndr family protein  note Ndr family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell differentiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen specific protein SF21 (InterPro:IPR015511), Ndr (InterPro:IPR004142); BEST Arabidopsis thaliana protein match is: Ndr family protein (TAIR:AT5G56750.1); Has 729 Blast hits to 729 proteins in 110 species: Archae - 0; Bacteria - 93; Metazoa - 481; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT2G19620.2p  transcript_id AT2G19620.2  protein_id AT2G19620.2p  transcript_id AT2G19620.2  
At2g19620	chr2:008488592	0.0	C/8488592-8488651,8487801-8487900,8487604-8487701,8487408-8487496,8487244-8487304,8487051-8487137,8486888-8486965,8486751-8486807,8486463-8486654,8486131-8486352	AT2G19620.1  CDS  gene_syn F3P11.22, F3P11_22  go_component cellular_component|GO:0005575||ND  go_process cell differentiation|GO:0030154||ISS  go_function molecular_function|GO:0003674||ND  product Ndr family protein  note Ndr family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell differentiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen specific protein SF21 (InterPro:IPR015511), Ndr (InterPro:IPR004142); BEST Arabidopsis thaliana protein match is: Ndr family protein (TAIR:AT5G56750.1); Has 729 Blast hits to 729 proteins in 110 species: Archae - 0; Bacteria - 93; Metazoa - 481; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT2G19620.1p  transcript_id AT2G19620.1  protein_id AT2G19620.1p  transcript_id AT2G19620.1  
At2g19630	chr2:008490217	0.0	C/8490217-8491110	AT2G19630.1  CDS  gene_syn F3P11.23, F3P11_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G31080.1); Has 618 Blast hits to 418 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 618; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G19630.1p  transcript_id AT2G19630.1  protein_id AT2G19630.1p  transcript_id AT2G19630.1  
At2g19630	chr2:008490891	0.0	C/8490891-8491110,8490217-8490653	AT2G19630.2  CDS  gene_syn F3P11.23, F3P11_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G65850.1); Has 569 Blast hits to 375 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 569; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G19630.2p  transcript_id AT2G19630.2  protein_id AT2G19630.2p  transcript_id AT2G19630.2  
At2g19640	chr2:008491401	0.0	W/8491401-8492388,8492465-8492502	AT2G19640.1  CDS  gene_syn ASH1-RELATED PROTEIN 2, ASHR2, F3P11.24, F3P11_24, SDG39, SET DOMAIN PROTEIN 39  gene ASHR2  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ASHR2 (ASH1-RELATED PROTEIN 2)  note ASH1-RELATED PROTEIN 2 (ASHR2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: shoot apex, root; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: SDG38 (SET DOMAIN PROTEIN 38) (TAIR:AT5G06620.1); Has 1270 Blast hits to 1252 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 661; Fungi - 228; Plants - 166; Viruses - 3; Other Eukaryotes - 212 (source: NCBI BLink).  protein_id AT2G19640.1p  transcript_id AT2G19640.1  protein_id AT2G19640.1p  transcript_id AT2G19640.1  
At2g19640	chr2:008491401	0.0	W/8491401-8492597	AT2G19640.2  CDS  gene_syn ASH1-RELATED PROTEIN 2, ASHR2, F3P11.24, F3P11_24, SDG39, SET DOMAIN PROTEIN 39  gene ASHR2  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ASHR2 (ASH1-RELATED PROTEIN 2)  note ASH1-RELATED PROTEIN 2 (ASHR2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: shoot apex, root; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: SDG38 (SET DOMAIN PROTEIN 38) (TAIR:AT5G06620.1); Has 1291 Blast hits to 1273 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 669; Fungi - 239; Plants - 166; Viruses - 3; Other Eukaryotes - 214 (source: NCBI BLink).  protein_id AT2G19640.2p  transcript_id AT2G19640.2  protein_id AT2G19640.2p  transcript_id AT2G19640.2  
At2g19650	chr2:008493655	0.0	C/8493655-8495703	AT2G19650.1  CDS  gene_syn F3P11.25, F3P11_25  go_process intracellular signaling cascade|GO:0007242||IEA  product DC1 domain-containing protein  note DC1 domain-containing protein; INVOLVED IN: intracellular signaling cascade; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT2G04680.1); Has 1369 Blast hits to 511 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 0; Plants - 1324; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT2G19650.1p  transcript_id AT2G19650.1  protein_id AT2G19650.1p  transcript_id AT2G19650.1  
At2g19660	chr2:008496720	0.0	C/8496720-8498708	AT2G19660.1  CDS  go_process intracellular signaling cascade|GO:0007242||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular signaling cascade; LOCATED IN: cellular_component unknown; EXPRESSED IN: root, carpel; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT2G04680.1); Has 1652 Blast hits to 668 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 129; Fungi - 0; Plants - 1447; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT2G19660.1p  transcript_id AT2G19660.1  protein_id AT2G19660.1p  transcript_id AT2G19660.1  
At2g19670	chr2:008500949	0.0	C/8500949-8501114,8500838-8500848,8500580-8500735,8500445-8500508,8500214-8500356,8500036-8500123,8499820-8499935,8499569-8499719,8499278-8499483	AT2G19670.1  CDS  gene_syn ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1A, ATPRMT1A, F6F22.30, F6F22_30, PRMT1A, PROTEIN ARGININE METHYLTRANSFERASE 1A  gene PRMT1A  go_function protein-arginine N-methyltransferase activity|GO:0016274||ISS  product PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A); protein-arginine N-methyltransferase  note PROTEIN ARGININE METHYLTRANSFERASE 1A (PRMT1A); FUNCTIONS IN: protein-arginine N-methyltransferase activity; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 12 (InterPro:IPR013217); BEST Arabidopsis thaliana protein match is: PRMT11 (ARGININE METHYLTRANSFERASE 11); protein-arginine N-methyltransferase (TAIR:AT4G29510.1); Has 1865 Blast hits to 1845 proteins in 367 species: Archae - 34; Bacteria - 308; Metazoa - 950; Fungi - 158; Plants - 165; Viruses - 0; Other Eukaryotes - 250 (source: NCBI BLink).  protein_id AT2G19670.1p  transcript_id AT2G19670.1  protein_id AT2G19670.1p  transcript_id AT2G19670.1  
At2g19680	chr2:008501865	0.0	W/8501865-8502046,8502436-8502622	AT2G19680.1  CDS  gene_syn F6F22.29, F6F22_29  go_component mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)|GO:0000276||IEA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_function hydrogen ion transmembrane transporter activity|GO:0015078||IEA  go_process proton transport|GO:0015992||ISS  product mitochondrial ATP synthase g subunit family protein  note mitochondrial ATP synthase g subunit family protein; FUNCTIONS IN: hydrogen ion transmembrane transporter activity; INVOLVED IN: proton transport, ATP synthesis coupled proton transport; LOCATED IN: mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F0 complex, subunit G, mitochondrial (InterPro:IPR006808); BEST Arabidopsis thaliana protein match is: mitochondrial ATP synthase g subunit family protein (TAIR:AT4G29480.1); Has 56 Blast hits to 56 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G19680.1p  transcript_id AT2G19680.1  protein_id AT2G19680.1p  transcript_id AT2G19680.1  
At2g19680	chr2:008501865	0.0	W/8501865-8502046,8502436-8502622	AT2G19680.2  CDS  gene_syn F6F22.29, F6F22_29  go_component mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)|GO:0000276||IEA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_function hydrogen ion transmembrane transporter activity|GO:0015078||IEA  go_process proton transport|GO:0015992||ISS  product mitochondrial ATP synthase g subunit family protein  note mitochondrial ATP synthase g subunit family protein; FUNCTIONS IN: hydrogen ion transmembrane transporter activity; INVOLVED IN: proton transport, ATP synthesis coupled proton transport; LOCATED IN: mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F0 complex, subunit G, mitochondrial (InterPro:IPR006808); BEST Arabidopsis thaliana protein match is: mitochondrial ATP synthase g subunit family protein (TAIR:AT4G29480.1); Has 56 Blast hits to 56 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G19680.2p  transcript_id AT2G19680.2  protein_id AT2G19680.2p  transcript_id AT2G19680.2  
At2g19690	chr2:008503326	0.0	W/8503326-8503412,8503636-8503672,8503748-8503867,8504350-8504549	AT2G19690.1  CDS  gene_syn F6F22.28, F6F22_28, PHOSPHOLIPASE A2-BETA, PLA2-BETA  gene PLA2-BETA  function One of four PLA2 genes in Arabidopsis. Involved in stomatal opening in response to light. Expressed in guard cells.  go_function phospholipase A2 activity|GO:0004623||IEA  go_function calcium ion binding|GO:0005509||IEA  go_component endoplasmic reticulum|GO:0005783|18725378|IDA  go_process response to light stimulus|GO:0009416|18725378|IEP  go_process regulation of stomatal movement|GO:0010119|18725378|IMP  go_function phospholipase A2 activity|GO:0004623||ISS  product PLA2-BETA (PHOSPHOLIPASE A2-BETA); calcium ion binding / phospholipase A2  note PHOSPHOLIPASE A2-BETA (PLA2-BETA); FUNCTIONS IN: phospholipase A2 activity, calcium ion binding; INVOLVED IN: response to light stimulus, regulation of stomatal movement; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: leaf mesophyll, vascular tissue, guard cell; CONTAINS InterPro DOMAIN/s: Phospholipase A2, active site (InterPro:IPR013090), Phospholipase A2 (InterPro:IPR016090), Phospholipase A2, eukaryotic (InterPro:IPR001211); BEST Arabidopsis thaliana protein match is: phospholipase A2 gamma, secretory low molecular weight (TAIR:AT4G29460.1); Has 315 Blast hits to 315 proteins in 63 species: Archae - 0; Bacteria - 17; Metazoa - 243; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G19690.1p  transcript_id AT2G19690.1  protein_id AT2G19690.1p  transcript_id AT2G19690.1  
At2g19700	chr2:008505193	0.0	C/8505193-8505570	AT2G19700.1  CDS  gene_syn F6F22.27, F6F22_27  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G19700.1p  transcript_id AT2G19700.1  protein_id AT2G19700.1p  transcript_id AT2G19700.1  
At2g19710	chr2:008506339	0.0	W/8506339-8506379,8506557-8506689,8506831-8506934,8507040-8507211,8507290-8507427,8507516-8507756,8507833-8509817	AT2G19710.1  CDS  gene_syn F6F22.26, F6F22_26  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29440.1); Has 5176 Blast hits to 3418 proteins in 343 species: Archae - 11; Bacteria - 452; Metazoa - 2274; Fungi - 515; Plants - 275; Viruses - 32; Other Eukaryotes - 1617 (source: NCBI BLink).  protein_id AT2G19710.1p  transcript_id AT2G19710.1  protein_id AT2G19710.1p  transcript_id AT2G19710.1  
At2g19720	chr2:008511129	0.0	C/8511129-8511258,8510393-8510553,8510223-8510321	AT2G19720.1  CDS  gene_syn F6F22.25, F6F22_25, ribosomal protein S15A B, rps15ab  gene rps15ab  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product rps15ab (ribosomal protein S15A B); structural constituent of ribosome  note ribosomal protein S15A B (rps15ab); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8 (InterPro:IPR000630); BEST Arabidopsis thaliana protein match is: rps15ae (ribosomal protein S15A E); structural constituent of ribosome (TAIR:AT4G29430.1); Has 2238 Blast hits to 2238 proteins in 697 species: Archae - 184; Bacteria - 769; Metazoa - 322; Fungi - 129; Plants - 201; Viruses - 0; Other Eukaryotes - 633 (source: NCBI BLink).  protein_id AT2G19720.1p  transcript_id AT2G19720.1  protein_id AT2G19720.1p  transcript_id AT2G19720.1  
At2g19730	chr2:008511752	0.0	W/8511752-8511899,8512370-8512533,8512876-8512995	AT2G19730.1  CDS  gene_syn F6F22.24, F6F22_24  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L28 (RPL28A)  note 60S ribosomal protein L28 (RPL28A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L28e (InterPro:IPR002672); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L28 (RPL28C) (TAIR:AT4G29410.2); Has 369 Blast hits to 369 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 203; Fungi - 59; Plants - 72; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT2G19730.1p  transcript_id AT2G19730.1  protein_id AT2G19730.1p  transcript_id AT2G19730.1  
At2g19730	chr2:008511752	0.0	W/8511752-8511899,8512370-8512533,8512876-8512995	AT2G19730.2  CDS  gene_syn F6F22.24, F6F22_24  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L28 (RPL28A)  note 60S ribosomal protein L28 (RPL28A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L28e (InterPro:IPR002672); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L28 (RPL28C) (TAIR:AT4G29410.2); Has 369 Blast hits to 369 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 203; Fungi - 59; Plants - 72; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT2G19730.2p  transcript_id AT2G19730.2  protein_id AT2G19730.2p  transcript_id AT2G19730.2  
At2g19730	chr2:008511752	0.0	W/8511752-8511899,8512370-8512533,8512876-8512995	AT2G19730.3  CDS  gene_syn F6F22.24, F6F22_24  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L28 (RPL28A)  note 60S ribosomal protein L28 (RPL28A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, chloroplast, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L28e (InterPro:IPR002672); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L28 (RPL28C) (TAIR:AT4G29410.2); Has 369 Blast hits to 369 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 203; Fungi - 59; Plants - 72; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT2G19730.3p  transcript_id AT2G19730.3  protein_id AT2G19730.3p  transcript_id AT2G19730.3  
At2g19740	chr2:008513577	0.0	W/8513577-8513656,8514067-8514346	AT2G19740.1  CDS  gene_syn F6F22.23, F6F22_23  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L31 (RPL31A)  note 60S ribosomal protein L31 (RPL31A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, chloroplast, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L31e (InterPro:IPR000054); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L31 (RPL31C) (TAIR:AT5G56710.1); Has 851 Blast hits to 851 proteins in 263 species: Archae - 99; Bacteria - 2; Metazoa - 389; Fungi - 88; Plants - 124; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT2G19740.1p  transcript_id AT2G19740.1  protein_id AT2G19740.1p  transcript_id AT2G19740.1  
At2g19750	chr2:008515037	0.0	W/8515037-8515040,8515154-8515291,8515760-8515806	AT2G19750.1  CDS  gene_syn F6F22.22, F6F22_22  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S30 (RPS30A)  note 40S ribosomal protein S30 (RPS30A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S30 (InterPro:IPR006846); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S30 (RPS30C) (TAIR:AT5G56670.1); Has 487 Blast hits to 487 proteins in 186 species: Archae - 2; Bacteria - 0; Metazoa - 223; Fungi - 90; Plants - 56; Viruses - 1; Other Eukaryotes - 115 (source: NCBI BLink).  protein_id AT2G19750.1p  transcript_id AT2G19750.1  protein_id AT2G19750.1p  transcript_id AT2G19750.1  
At2g19755	chr2:008516188	0.0	C/8516188-8516559	AT2G19755.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 7.2e-08 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At2g19760	chr2:008517945	0.0	C/8517945-8518067,8517301-8517438,8517074-8517208	AT2G19760.1  CDS  gene_syn F6F22.21, F6F22_21, PFN1, PRF1, PROFILIN 1  gene PRF1  function first member of the Arabidopsis profilin multigene family, expressed in all organs of Arabidopsis. Binds poly-L-proline. The first intron of PRF1 enhances gene expression in vegetative tissues.  go_component plasma membrane|GO:0005886|17644812|IDA  go_function actin binding|GO:0003779||IEA  go_component cell wall|GO:0005618|15469496|IDA  go_component nucleus|GO:0005634|15469496|IDA  go_component nucleolus|GO:0005730|15469496|IDA  go_component cytoplasm|GO:0005737|15469496|IDA  go_component cytoplasm|GO:0005737|8647830|TAS  go_component spindle|GO:0005819|15469496|IDA  go_component phragmoplast|GO:0009524|15469496|IDA  go_component actin cytoskeleton|GO:0015629||ISS  go_process cytoskeleton organization|GO:0007010||ISS  go_process actin polymerization or depolymerization|GO:0008154|8647830|IDA  go_process unidimensional cell growth|GO:0009826|11340190|IMP  go_function actin binding|GO:0003779||ISS  product PRF1 (PROFILIN 1); actin binding  note PROFILIN 1 (PRF1); FUNCTIONS IN: actin binding; INVOLVED IN: actin polymerization or depolymerization, cytoskeleton organization, unidimensional cell growth; LOCATED IN: in 8 components; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Profilin/allergen (InterPro:IPR002097), Profilin, plant (InterPro:IPR005455); BEST Arabidopsis thaliana protein match is: PFN2 (PROFILIN 2); actin binding / protein binding (TAIR:AT4G29350.1); Has 777 Blast hits to 776 proteins in 204 species: Archae - 0; Bacteria - 2; Metazoa - 123; Fungi - 89; Plants - 494; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT2G19760.1p  transcript_id AT2G19760.1  protein_id AT2G19760.1p  transcript_id AT2G19760.1  
At2g19770	chr2:008520988	0.0	C/8520988-8521119,8520594-8520731,8519885-8520019	AT2G19770.1  CDS  gene_syn F6F22.20, F6F22_20, PRF5, PROFILIN5  gene PRF5  function Encodes profilin 5, originally named profilin 4 (PRO4/PFN4). Low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton. Pollen-specific plant profilin present predominantly in mature pollen and growing pollen tubes.  go_component nucleus|GO:0005634|15469496|IDA  go_component cytoplasm|GO:0005737|11977080|IDA  go_component cytoplasm|GO:0005737|15469496|IDA  go_component phragmoplast|GO:0009524|15469496|IDA  go_component actin cytoskeleton|GO:0015629||ISS  go_process cytoskeleton organization|GO:0007010||ISS  go_process actin cytoskeleton organization|GO:0030036|11977080|TAS  go_function actin binding|GO:0003779||ISS  go_function actin monomer binding|GO:0003785|11977080|TAS  product PRF5 (PROFILIN5); actin binding / actin monomer binding  note PROFILIN5 (PRF5); FUNCTIONS IN: actin binding, actin monomer binding; INVOLVED IN: cytoskeleton organization, actin cytoskeleton organization; LOCATED IN: nucleus, actin cytoskeleton, phragmoplast, cytoplasm; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Profilin/allergen (InterPro:IPR002097), Profilin, plant (InterPro:IPR005455); BEST Arabidopsis thaliana protein match is: PRF4 (PROFILIN 4); actin binding (TAIR:AT4G29340.1); Has 759 Blast hits to 758 proteins in 197 species: Archae - 0; Bacteria - 2; Metazoa - 118; Fungi - 87; Plants - 493; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT2G19770.1p  transcript_id AT2G19770.1  protein_id AT2G19770.1p  transcript_id AT2G19770.1  
At2g19780	chr2:008522831	0.0	C/8522831-8524039	AT2G19780.1  CDS  gene_syn F6F22.19, F6F22_19  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein / extensin family protein  note leucine-rich repeat family protein / extensin family protein; FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / extensin family protein (TAIR:AT4G29240.1); Has 36605 Blast hits to 12745 proteins in 598 species: Archae - 18; Bacteria - 1308; Metazoa - 6558; Fungi - 291; Plants - 26156; Viruses - 0; Other Eukaryotes - 2274 (source: NCBI BLink).  protein_id AT2G19780.1p  transcript_id AT2G19780.1  protein_id AT2G19780.1p  transcript_id AT2G19780.1  
At2g19790	chr2:008527302	0.0	W/8527302-8527442,8527822-8527908,8528090-8528158,8528261-8528395	AT2G19790.1  CDS  gene_syn F6F22.18, F6F22_18  go_component membrane coat|GO:0030117||IEA  go_process transport|GO:0006810||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process protein transport|GO:0015031||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function protein binding|GO:0005515||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component clathrin vesicle coat|GO:0030125||ISS  go_process intracellular protein transport|GO:0006886||ISS  product clathrin adaptor complex small chain family protein  note clathrin adaptor complex small chain family protein; FUNCTIONS IN: protein transporter activity, protein binding; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport, protein transport; LOCATED IN: membrane coat, clathrin vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Adaptor protein complex, sigma subunit (InterPro:IPR016635), Clathrin adaptor, sigma subunit/coatomer, zeta subunit (InterPro:IPR000804), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: clathrin coat assembly protein, putative (TAIR:AT1G47830.1); Has 1401 Blast hits to 1400 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 691; Fungi - 264; Plants - 175; Viruses - 0; Other Eukaryotes - 271 (source: NCBI BLink).  protein_id AT2G19790.1p  transcript_id AT2G19790.1  protein_id AT2G19790.1p  transcript_id AT2G19790.1  
At2g19796	chr2:008529916	0.0	C/8529916-8530187	AT2G19796.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G19796.1  
At2g19800	chr2:008533324	0.0	C/8533324-8533354,8533038-8533176,8532868-8532952,8532569-8532773,8532162-8532221,8532030-8532082,8531769-8531891,8531596-8531665,8531404-8531482,8531218-8531299,8531106-8531132	AT2G19800.1  CDS  gene_syn F6F22.17, F6F22_17, MIOX2, MYO-INOSITOL OXYGENASE 2  gene MIOX2  function Encodes a myo-inositol oxygenase family gene.  go_component cytoplasm|GO:0005737||IEA  go_process inositol catabolic process|GO:0019310||IEA  go_function inositol oxygenase activity|GO:0050113|15660207|IMP  product MIOX2 (MYO-INOSITOL OXYGENASE 2); inositol oxygenase  note MYO-INOSITOL OXYGENASE 2 (MIOX2); FUNCTIONS IN: inositol oxygenase activity; INVOLVED IN: inositol catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF706 (InterPro:IPR007828); BEST Arabidopsis thaliana protein match is: MIOX4; inositol oxygenase (TAIR:AT4G26260.1); Has 348 Blast hits to 348 proteins in 106 species: Archae - 0; Bacteria - 12; Metazoa - 116; Fungi - 78; Plants - 54; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT2G19800.1p  transcript_id AT2G19800.1  protein_id AT2G19800.1p  transcript_id AT2G19800.1  
At2g19802	chr2:008538930	0.0	C/8538930-8539187	AT2G19802.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G02498.1); Has 15 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G19802.1p  transcript_id AT2G19802.1  protein_id AT2G19802.1p  transcript_id AT2G19802.1  
At2g19803	chr2:008540457	0.0	W/8540457-8540990	AT2G19803.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g19806	chr2:008545634	0.0	W/8545634-8547002	AT2G19806.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mariner-like transposase family, has a 1.2e-19 P-value blast match to GB:AAC28384 mariner transposase (Mariner_TC1-element) (Glycine max)  
At2g19810	chr2:008550419	0.0	W/8550419-8551498	AT2G19810.1  CDS  gene_syn F6F22.16, F6F22_16  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product zinc finger (CCCH-type) family protein  note zinc finger (CCCH-type) family protein; FUNCTIONS IN: transcription factor activity, nucleic acid binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein (TAIR:AT4G29190.1); Has 468 Blast hits to 445 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 0; Plants - 211; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).  protein_id AT2G19810.1p  transcript_id AT2G19810.1  protein_id AT2G19810.1p  transcript_id AT2G19810.1  
At2g19820	chr2:008553920	0.0	C/8553920-8554029,8553544-8553808	AT2G19820.1  CDS  gene_syn F6F22.15, F6F22_15, LBD9, LOB DOMAIN-CONTAINING PROTEIN 9  gene LBD9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product LBD9 (LOB DOMAIN-CONTAINING PROTEIN 9)  note LOB DOMAIN-CONTAINING PROTEIN 9 (LBD9); INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD5 (LOB DOMAIN-CONTAINING PROTEIN 5) (TAIR:AT1G36000.1); Has 480 Blast hits to 477 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 480; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G19820.1p  transcript_id AT2G19820.1  protein_id AT2G19820.1p  transcript_id AT2G19820.1  
At2g19825	chr2:008554954	0.0	W/8554954-8555559	AT2G19825.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At2g19830	chr2:008559315	0.0	C/8559315-8559389,8558959-8559058,8558768-8558853,8558582-8558673,8558373-8558484,8558101-8558277	AT2G19830.1  CDS  gene_syn F6F22.14, F6F22_14, SNF7.2, VPS32  gene SNF7.2  go_component plasma membrane|GO:0005886|17317660|IDA  go_component ESCRT III complex|GO:0000815|17090720|ISS  go_process vesicle-mediated transport|GO:0016192|16488176|ISS  product SNF7.2  note SNF7.2; INVOLVED IN: vesicle-mediated transport; LOCATED IN: ESCRT III complex, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7.1 (TAIR:AT4G29160.3); Has 1361 Blast hits to 1361 proteins in 178 species: Archae - 10; Bacteria - 15; Metazoa - 579; Fungi - 283; Plants - 285; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).  protein_id AT2G19830.1p  transcript_id AT2G19830.1  protein_id AT2G19830.1p  transcript_id AT2G19830.1  
At2g19840	chr2:008562495	0.0	C/8562495-8566522	AT2G19840.1  mRNA_TE_gene  pseudo  gene_syn F6F22.13, F6F22_13  note Transposable element gene, copia-like retrotransposon family, has a 3.5e-301 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At2g19850	chr2:008568703	0.0	W/8568703-8569084,8569432-8569436	AT2G19850.1  CDS  gene_syn F6F22.12, F6F22_12  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: OFP9 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 9) (TAIR:AT4G04030.1); Has 24 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 15; Viruses - 3; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G19850.1p  transcript_id AT2G19850.1  protein_id AT2G19850.1p  transcript_id AT2G19850.1  
At2g19850	chr2:008568703	0.0	W/8568703-8569164	AT2G19850.2  CDS  gene_syn F6F22.12, F6F22_12  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54730.1).  protein_id AT2G19850.2p  transcript_id AT2G19850.2  protein_id AT2G19850.2p  transcript_id AT2G19850.2  
At2g19860	chr2:008570818	0.0	W/8570818-8571089,8571894-8572044,8572136-8572318,8572423-8572497,8572597-8572752,8572840-8572938,8573036-8573166,8573242-8573323,8573403-8573762	AT2G19860.1  CDS  gene_syn ARABIDOPSIS THALIANA HEXOKINASE 2, ATHXK2, F6F22.11, F6F22_11, HEXOKINASE 2, HXK2  gene HXK2  function Encodes a protein with hexokinase activity (AtHXK2) and acts as a sensor for plant sugar responses.  go_component mitochondrion|GO:0005739|12953116|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component mitochondrion|GO:0005739|16920781|TAS  go_component mitochondrion|GO:0005739|18481082|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process response to hypoxia|GO:0001666|17234224|IEP  go_process response to osmotic stress|GO:0006970|17234224|IEP  go_process response to cold|GO:0009409|17234224|IEP  go_process response to salt stress|GO:0009651|17234224|IEP  go_process hexokinase-dependent signaling|GO:0009747|9014361|IMP  go_process sugar mediated signaling|GO:0010182|9014361|IMP  go_process programmed cell death|GO:0012501|16920781|IMP  go_function glucokinase activity|GO:0004340|11851922|IDA  go_function hexokinase activity|GO:0004396|9014361|IMP  go_function hexokinase activity|GO:0004396||ISS  go_function ATP binding|GO:0005524||ISS  go_function fructokinase activity|GO:0008865|18481082|IDA  product HXK2 (HEXOKINASE 2); ATP binding / fructokinase/ glucokinase/ hexokinase  note HEXOKINASE 2 (HXK2); FUNCTIONS IN: hexokinase activity, fructokinase activity, glucokinase activity, ATP binding; INVOLVED IN: in 7 processes; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hexokinase (InterPro:IPR001312); BEST Arabidopsis thaliana protein match is: HXK1 (HEXOKINASE 1); ATP binding / fructokinase/ glucokinase/ hexokinase (TAIR:AT4G29130.1); Has 1794 Blast hits to 1545 proteins in 232 species: Archae - 0; Bacteria - 30; Metazoa - 1034; Fungi - 406; Plants - 204; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).  protein_id AT2G19860.1p  transcript_id AT2G19860.1  protein_id AT2G19860.1p  transcript_id AT2G19860.1  
At2g19860	chr2:008571949	0.0	W/8571949-8572044,8572136-8572318,8572423-8572497,8572597-8572752,8572840-8572938,8573036-8573166,8573242-8573323,8573403-8573762	AT2G19860.2  CDS  gene_syn ARABIDOPSIS THALIANA HEXOKINASE 2, ATHXK2, F6F22.11, F6F22_11, HEXOKINASE 2, HXK2  gene HXK2  function Encodes a protein with hexokinase activity (AtHXK2) and acts as a sensor for plant sugar responses.  go_component mitochondrion|GO:0005739|12953116|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component mitochondrion|GO:0005739|16920781|TAS  go_component mitochondrion|GO:0005739|18481082|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process response to hypoxia|GO:0001666|17234224|IEP  go_process response to osmotic stress|GO:0006970|17234224|IEP  go_process response to cold|GO:0009409|17234224|IEP  go_process response to salt stress|GO:0009651|17234224|IEP  go_process hexokinase-dependent signaling|GO:0009747|9014361|IMP  go_process sugar mediated signaling|GO:0010182|9014361|IMP  go_process programmed cell death|GO:0012501|16920781|IMP  go_function glucokinase activity|GO:0004340|11851922|IDA  go_function hexokinase activity|GO:0004396|9014361|IMP  go_function hexokinase activity|GO:0004396||ISS  go_function ATP binding|GO:0005524||ISS  go_function fructokinase activity|GO:0008865|18481082|IDA  product HXK2 (HEXOKINASE 2); ATP binding / fructokinase/ glucokinase/ hexokinase  note HEXOKINASE 2 (HXK2); FUNCTIONS IN: hexokinase activity, fructokinase activity, glucokinase activity, ATP binding; INVOLVED IN: in 7 processes; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hexokinase (InterPro:IPR001312); BEST Arabidopsis thaliana protein match is: HXK1 (HEXOKINASE 1); ATP binding / fructokinase/ glucokinase/ hexokinase (TAIR:AT4G29130.1); Has 1752 Blast hits to 1512 proteins in 228 species: Archae - 0; Bacteria - 30; Metazoa - 1006; Fungi - 399; Plants - 203; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).  protein_id AT2G19860.2p  transcript_id AT2G19860.2  protein_id AT2G19860.2p  transcript_id AT2G19860.2  
At2g19870	chr2:008576034	0.0	W/8576034-8577803	AT2G19870.1  CDS  gene_syn F6F22.10, F6F22_10  go_component chloroplast|GO:0009507|18431481|IDA  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_function RNA methyltransferase activity|GO:0008173||IEA  go_process RNA processing|GO:0006396||ISS  go_function RNA binding|GO:0003723||ISS  go_function RNA methyltransferase activity|GO:0008173||ISS  product tRNA/rRNA methyltransferase (SpoU) family protein  note tRNA/rRNA methyltransferase (SpoU) family protein; FUNCTIONS IN: methyltransferase activity, RNA binding, RNA methyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537), RNA methyltransferase TrmH, group 3 (InterPro:IPR004441), RNA 2-O ribose methyltransferase, substrate binding (InterPro:IPR013123); Has 7607 Blast hits to 7535 proteins in 1468 species: Archae - 3; Bacteria - 3869; Metazoa - 693; Fungi - 168; Plants - 122; Viruses - 3; Other Eukaryotes - 2749 (source: NCBI BLink).  protein_id AT2G19870.1p  transcript_id AT2G19870.1  protein_id AT2G19870.1p  transcript_id AT2G19870.1  
At2g19880	chr2:008581578	0.0	W/8581578-8581664,8582155-8582210,8582303-8582477,8582619-8582720,8582862-8582933,8583115-8583231,8583376-8583453,8583557-8583619,8583712-8583808,8583886-8583964,8584050-8584261,8584469-8584614,8584741-8584863,8584966-8585118	AT2G19880.1  CDS  gene_syn F6F22.9, F6F22_9  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function ceramide glucosyltransferase activity|GO:0008120||ISS  product ceramide glucosyltransferase, putative  note ceramide glucosyltransferase, putative; FUNCTIONS IN: ceramide glucosyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); Has 164 Blast hits to 162 proteins in 78 species: Archae - 10; Bacteria - 39; Metazoa - 77; Fungi - 14; Plants - 16; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT2G19880.1p  transcript_id AT2G19880.1  protein_id AT2G19880.1p  transcript_id AT2G19880.1  
At2g19890	chr2:008587244	0.0	W/8587244-8587541,8587596-8587802,8589291-8589637	AT2G19890.1  CDS  gene_syn F6F22.8, F6F22_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62460.1); Has 33 Blast hits to 33 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G19890.1p  transcript_id AT2G19890.1  protein_id AT2G19890.1p  transcript_id AT2G19890.1  
At2g19893	chr2:008589953	0.0	W/8589953-8590019,8590167-8590324	AT2G19893.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G19893.1p  transcript_id AT2G19893.1  protein_id AT2G19893.1p  transcript_id AT2G19893.1  
At2g19900	chr2:008595282	0.0	C/8595282-8595403,8595080-8595200,8594903-8594977,8594669-8594820,8594460-8594565,8594306-8594371,8594135-8594230,8593975-8594046,8593792-8593875,8593613-8593711,8593486-8593533,8593357-8593410,8593182-8593280,8593008-8593097,8592831-8592908,8592672-8592746,8592490-8592580,8592275-8592403,8592106-8592194	AT2G19900.1  CDS  gene_syn ATNADP-ME1, F6F22.7, F6F22_7, NADP-malic enzyme 1  gene ATNADP-ME1  function The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals.  go_process malate metabolic process|GO:0006108||IEA  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_component cellular_component|GO:0005575||ND  go_process malate metabolic process|GO:0006108||ISS  go_function malic enzyme activity|GO:0004470||ISS  go_function malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|GO:0004473|16113210|IDA  go_function oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor|GO:0016652||ISS  product ATNADP-ME1 (NADP-malic enzyme 1); malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor  note NADP-malic enzyme 1 (ATNADP-ME1); FUNCTIONS IN: oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor, malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity, malic enzyme activity; INVOLVED IN: oxidation reduction, malate metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, embryo, root, stamen, seed; EXPRESSED DURING: 4 anthesis, D bilateral stage; CONTAINS InterPro DOMAIN/s: Malic oxidoreductase (InterPro:IPR001891), Malic enzyme, NAD-binding (InterPro:IPR012302), Malic enzyme, conserved site (InterPro:IPR015884), Malic enzyme, N-terminal (InterPro:IPR012301), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: ATNADP-ME2 (NADP-malic enzyme 2); malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor (TAIR:AT5G11670.1); Has 5985 Blast hits to 5975 proteins in 1333 species: Archae - 86; Bacteria - 3248; Metazoa - 554; Fungi - 152; Plants - 275; Viruses - 0; Other Eukaryotes - 1670 (source: NCBI BLink).  protein_id AT2G19900.1p  transcript_id AT2G19900.1  protein_id AT2G19900.1p  transcript_id AT2G19900.1  
At2g19910	chr2:008600421	0.0	C/8600421-8600757,8600198-8600339,8599983-8600115,8599751-8599825,8599317-8599497,8598964-8599162,8598776-8598863,8598525-8598668,8598377-8598424,8598217-8598288,8598036-8598142,8597790-8597938,8597440-8597656,8597069-8597294,8596838-8596986,8596448-8596755,8596184-8596353,8595820-8596053	AT2G19910.1  CDS  gene_syn F6F22.6, F6F22_6  go_component cellular_component|GO:0005575||ND  go_process posttranscriptional gene silencing|GO:0016441||ISS  go_function RNA-directed RNA polymerase activity|GO:0003968||ISS  product RNA-dependent RNA polymerase family protein  note RNA-dependent RNA polymerase family protein; FUNCTIONS IN: RNA-directed RNA polymerase activity; INVOLVED IN: posttranscriptional gene silencing; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-dependent RNA polymerase, eukaryotic-type (InterPro:IPR007855); BEST Arabidopsis thaliana protein match is: RNA-dependent RNA polymerase family protein (TAIR:AT2G19920.1); Has 326 Blast hits to 325 proteins in 69 species: Archae - 0; Bacteria - 0; Metazoa - 52; Fungi - 151; Plants - 95; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT2G19910.1p  transcript_id AT2G19910.1  protein_id AT2G19910.1p  transcript_id AT2G19910.1  
At2g19920	chr2:008606536	0.0	C/8606536-8606887,8606269-8606413,8606082-8606196,8605806-8605880,8605513-8605693,8605174-8605372,8604960-8605047,8604735-8604878,8604634-8604654,8604471-8604542,8604292-8604398,8604053-8604201,8603680-8603892,8603308-8603531,8603078-8603226,8602696-8602997,8602444-8602601,8602222-8602311	AT2G19920.1  CDS  gene_syn F6F22.5, F6F22_5  go_component cellular_component|GO:0005575||ND  go_process posttranscriptional gene silencing|GO:0016441||ISS  go_function RNA-directed RNA polymerase activity|GO:0003968||ISS  product RNA-dependent RNA polymerase family protein  note RNA-dependent RNA polymerase family protein; FUNCTIONS IN: RNA-directed RNA polymerase activity; INVOLVED IN: posttranscriptional gene silencing; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-dependent RNA polymerase, eukaryotic-type (InterPro:IPR007855); BEST Arabidopsis thaliana protein match is: RNA-dependent RNA polymerase family protein (TAIR:AT2G19910.1); Has 327 Blast hits to 325 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 51; Fungi - 149; Plants - 97; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT2G19920.1p  transcript_id AT2G19920.1  protein_id AT2G19920.1p  transcript_id AT2G19920.1  
At2g19930	chr2:008612135	0.0	C/8612135-8612441,8611898-8612042,8611630-8611759,8611411-8611500,8611044-8611227,8610686-8610884,8610494-8610581,8610246-8610389,8610112-8610132,8609945-8610016,8609749-8609855,8609489-8609637,8609174-8609396,8608814-8609039,8608591-8608739,8608199-8608503,8607945-8608102,8607533-8607769	AT2G19930.1  CDS  gene_syn F6F22.4, F6F22_4  go_component cellular_component|GO:0005575||ND  go_process posttranscriptional gene silencing|GO:0016441||ISS  go_function RNA-directed RNA polymerase activity|GO:0003968||ISS  product RNA-dependent RNA polymerase family protein  note RNA-dependent RNA polymerase family protein; FUNCTIONS IN: RNA-directed RNA polymerase activity; INVOLVED IN: posttranscriptional gene silencing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: RNA-dependent RNA polymerase, eukaryotic-type (InterPro:IPR007855); BEST Arabidopsis thaliana protein match is: RNA-dependent RNA polymerase family protein (TAIR:AT2G19910.1); Has 332 Blast hits to 329 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 52; Fungi - 153; Plants - 97; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT2G19930.1p  transcript_id AT2G19930.1  protein_id AT2G19930.1p  transcript_id AT2G19930.1  
At2g19940	chr2:008613168	0.0	W/8613168-8613215,8613347-8613516,8613843-8613950,8614056-8614142,8614223-8614273,8614348-8614419,8614505-8614624,8614713-8614773,8614850-8614930,8615007-8615086,8615162-8615251,8615324-8615452,8615542-8615649	AT2G19940.1  CDS  gene_syn F6F22.3, F6F22_3  go_component nucleolus|GO:0005730|15496452|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function catalytic activity|GO:0003824||IEA  go_function N-acetyl-gamma-glutamyl-phosphate reductase activity|GO:0003942||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor|GO:0016620||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_process amino acid metabolic process|GO:0006520||ISS  go_function oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor|GO:0016620||ISS  product N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerization  note N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerization; FUNCTIONS IN: in 6 functions; INVOLVED IN: amino acid metabolic process, response to cadmium ion; LOCATED IN: nucleolus, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Semialdehyde dehydrogenase, dimerisation region (InterPro:IPR012280), Semialdehyde dehydrogenase, NAD-binding (InterPro:IPR000534), NAD(P)-binding (InterPro:IPR016040), N-acetyl-gamma-glutamyl-phosphate reductase (InterPro:IPR000706); Has 5598 Blast hits to 5597 proteins in 1211 species: Archae - 243; Bacteria - 2608; Metazoa - 0; Fungi - 108; Plants - 45; Viruses - 0; Other Eukaryotes - 2594 (source: NCBI BLink).  protein_id AT2G19940.1p  transcript_id AT2G19940.1  protein_id AT2G19940.1p  transcript_id AT2G19940.1  
At2g19940	chr2:008613168	0.0	W/8613168-8613215,8613347-8613516,8613843-8613950,8614056-8614142,8614223-8614273,8614348-8614419,8614505-8614624,8614713-8614773,8614850-8614930,8615007-8615086,8615162-8615251,8615324-8615452,8615542-8615649	AT2G19940.2  CDS  gene_syn F6F22.3, F6F22_3  go_component nucleolus|GO:0005730|15496452|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function catalytic activity|GO:0003824||IEA  go_function N-acetyl-gamma-glutamyl-phosphate reductase activity|GO:0003942||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor|GO:0016620||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_process amino acid metabolic process|GO:0006520||ISS  go_function oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor|GO:0016620||ISS  product N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerization  note N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerization; FUNCTIONS IN: in 6 functions; INVOLVED IN: amino acid metabolic process, response to cadmium ion; LOCATED IN: nucleolus, chloroplast, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Semialdehyde dehydrogenase, dimerisation region (InterPro:IPR012280), Semialdehyde dehydrogenase, NAD-binding (InterPro:IPR000534), NAD(P)-binding (InterPro:IPR016040), N-acetyl-gamma-glutamyl-phosphate reductase (InterPro:IPR000706); Has 5598 Blast hits to 5597 proteins in 1211 species: Archae - 243; Bacteria - 2608; Metazoa - 0; Fungi - 108; Plants - 45; Viruses - 0; Other Eukaryotes - 2594 (source: NCBI BLink).  protein_id AT2G19940.2p  transcript_id AT2G19940.2  protein_id AT2G19940.2p  transcript_id AT2G19940.2  
At2g19950	chr2:008621192	0.0	C/8621192-8621219,8621036-8621116,8620809-8620858,8620067-8620705,8619891-8619953,8619691-8619768,8619378-8619581,8619165-8619221,8618979-8619053,8618819-8618890,8618519-8618581,8618335-8618433,8617876-8617953,8617730-8617798,8617277-8617324,8617091-8617186,8616926-8617002,8616791-8616836,8616606-8616704,8616477-8616521,8616341-8616397	AT2G19950.1  CDS  gene_syn F6F22.2, F6F22_2, GC1, Golgin Candidate 1  gene GC1  function This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC1 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (558-715 aa) portion of the protein.  go_component Golgi apparatus|GO:0005794|18182439|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product GC1 (Golgin Candidate 1)  note Golgin Candidate 1 (GC1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; BEST Arabidopsis thaliana protein match is: CIP1 (COP1-INTERACTIVE PROTEIN 1); protein binding (TAIR:AT5G41790.1); Has 56866 Blast hits to 33099 proteins in 1762 species: Archae - 485; Bacteria - 7510; Metazoa - 29671; Fungi - 4801; Plants - 2725; Viruses - 176; Other Eukaryotes - 11498 (source: NCBI BLink).  protein_id AT2G19950.1p  transcript_id AT2G19950.1  protein_id AT2G19950.1p  transcript_id AT2G19950.1  
At2g19960	chr2:008622215	0.0	W/8622215-8622736	AT2G19960.1  CDS  gene_syn T2G17.24, T2G17_24  go_function protein dimerization activity|GO:0046983||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product hAT dimerisation domain-containing protein / transposase-related  note hAT dimerisation domain-containing protein / transposase-related; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906); BEST Arabidopsis thaliana protein match is: hAT dimerisation domain-containing protein / transposase-related (TAIR:AT2G06500.1); Has 192 Blast hits to 189 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G19960.1p  transcript_id AT2G19960.1  protein_id AT2G19960.1p  transcript_id AT2G19960.1  
At2g19970	chr2:008623913	0.0	C/8623913-8624446	AT2G19970.1  CDS  gene_syn T2G17.23, T2G17_23  go_component extracellular region|GO:0005576||IEA  go_component extracellular region|GO:0005576||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pathogenesis-related protein, putative  note pathogenesis-related protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: extracellular region; EXPRESSED IN: hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related (InterPro:IPR001283), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: allergen V5/Tpx-1-related family protein (TAIR:AT2G19980.1); Has 1706 Blast hits to 1646 proteins in 235 species: Archae - 0; Bacteria - 45; Metazoa - 869; Fungi - 182; Plants - 587; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT2G19970.1p  transcript_id AT2G19970.1  protein_id AT2G19970.1p  transcript_id AT2G19970.1  
At2g19980	chr2:008628077	0.0	C/8628077-8628220,8627699-8628052	AT2G19980.1  CDS  gene_syn T2G17.22, T2G17_22  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_component extracellular region|GO:0005576||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product allergen V5/Tpx-1-related family protein  note allergen V5/Tpx-1-related family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: male gametophyte, sepal, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related (InterPro:IPR001283), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: pathogenesis-related protein, putative (TAIR:AT2G19970.1); Has 1405 Blast hits to 1361 proteins in 204 species: Archae - 0; Bacteria - 27; Metazoa - 666; Fungi - 133; Plants - 566; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT2G19980.1p  transcript_id AT2G19980.1  protein_id AT2G19980.1p  transcript_id AT2G19980.1  
At2g19990	chr2:008630065	0.0	C/8630065-8630595	AT2G19990.1  CDS  gene_syn PATHOGENESIS-RELATED PROTEIN-1-LIKE, PR-1-LIKE, T2G17.21, T2G17_21  gene PR-1-LIKE  function Encodes a PR-1-like protein homolog that is differentially expressed in resistant compared to susceptible cultivars by powdery mildew infection. The deduced amino acid sequence has 24 amino acids comprising the signal peptide and 140 amino acids of the mature peptide (15 kDa). Northern blot analysis showed accumulation of the corresponding mRNA 12 h after inoculation of resistant barley cultivars with Erysiphe graminis. Though the Genbank record for the cDNA associated to this gene model is called  PR-1 , the sequence actually corresponds to PR-1-like. Expression of this gene is not salicylic-acid responsive.  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_component extracellular region|GO:0005576||ISS  go_process biological_process|GO:0008150|8219079|ND  go_function molecular_function|GO:0003674||ND  product PR-1-LIKE (PATHOGENESIS-RELATED PROTEIN-1-LIKE)  note PATHOGENESIS-RELATED PROTEIN-1-LIKE (PR-1-LIKE); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: flower, root, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related, conserved site (InterPro:IPR018244), Allergen V5/Tpx-1 related (InterPro:IPR001283), Ves allergen (InterPro:IPR002413), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: pathogenesis-related protein, putative (TAIR:AT4G33720.1); Has 2251 Blast hits to 2167 proteins in 280 species: Archae - 0; Bacteria - 47; Metazoa - 1336; Fungi - 220; Plants - 599; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT2G19990.1p  transcript_id AT2G19990.1  protein_id AT2G19990.1p  transcript_id AT2G19990.1  
At2g20000	chr2:008636796	0.0	C/8636796-8636900,8636074-8636146,8635845-8635954,8635662-8635708,8635476-8635573,8635111-8635397,8634649-8634804,8634283-8634496,8633950-8634158,8633793-8633858,8633546-8633665,8633364-8633440,8633162-8633281,8632841-8633060,8632470-8632751,8632324-8632374	AT2G20000.1  CDS  gene_syn CDC27b, HBT, HOBBIT, T2G17.20, T2G17_20  gene HBT  function Required for cell division and cell differentiation in meristems. Encodes a homolog of the CDC27 subunit of the anaphase-promoting complex (APC). Unlike other CDC27 homologs in Arabidopsis, its transcription is cell cycle regulated. Strong hbt mutants give rise to seedlings that lack an anatomically recognizable quiescent center and differentiated columella root cap cells, the cell types derived from the wild-type hypophysis. Furthermore, they have no mitotically active root meristem and lack a differentiated lateral root cap.  go_function binding|GO:0005488||IEA  go_component nucleus|GO:0005634|17944809|IDA  go_component anaphase-promoting complex|GO:0005680|12368267|ISS  go_component anaphase-promoting complex|GO:0005680|12368267|TAS  go_component anaphase-promoting complex|GO:0005680|17944809|IPI  go_component spindle|GO:0005819|17944809|IDA  go_component cell plate|GO:0009504|17944809|IDA  go_process gamete generation|GO:0007276|17944809|IGI  go_process regulation of mitotic cell cycle|GO:0007346|12368267|TAS  go_process regulation of mitotic cell cycle|GO:0007346|16938844|IMP  go_process response to auxin stimulus|GO:0009733|12368267|IMP  go_process root meristem specification|GO:0010071|9425146|IMP  go_process cell differentiation|GO:0030154|12368267|IMP  go_process root development|GO:0048364|9425146|IMP  go_process root cap development|GO:0048829|9425146|IMP  go_process cell division|GO:0051301|17944809|IDA  go_process regulation of cell division|GO:0051302|17944809|IGI  go_process regulation of unidimensional cell growth|GO:0051510|17944809|IGI  product HBT (HOBBIT); binding  note HOBBIT (HBT); FUNCTIONS IN: binding; INVOLVED IN: in 10 processes; LOCATED IN: nucleus, anaphase-promoting complex, spindle, cell plate; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: CDC27a; binding (TAIR:AT3G16320.1); Has 14548 Blast hits to 7902 proteins in 804 species: Archae - 893; Bacteria - 5899; Metazoa - 1625; Fungi - 538; Plants - 302; Viruses - 0; Other Eukaryotes - 5291 (source: NCBI BLink).  protein_id AT2G20000.1p  transcript_id AT2G20000.1  protein_id AT2G20000.1p  transcript_id AT2G20000.1  
At2g20010	chr2:008640765	0.0	C/8640765-8640830,8639819-8640688,8639277-8639735,8638996-8639185,8637977-8638896	AT2G20010.1  CDS  gene_syn T2G17.19, T2G17_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Munc13 homology 1 (InterPro:IPR014770), Protein of unknown function DUF810 (InterPro:IPR008528), Munc13 homology 2 (InterPro:IPR014772); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25800.1); Has 93 Blast hits to 88 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G20010.1p  transcript_id AT2G20010.1  protein_id AT2G20010.1p  transcript_id AT2G20010.1  
At2g20010	chr2:008640765	0.0	C/8640765-8641184,8639819-8640688,8639277-8639735,8638996-8639185,8637977-8638896	AT2G20010.2  CDS  gene_syn T2G17.19, T2G17_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Munc13 homology 1 (InterPro:IPR014770), Protein of unknown function DUF810 (InterPro:IPR008528), Munc13 homology 2 (InterPro:IPR014772); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25800.1); Has 94 Blast hits to 89 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G20010.2p  transcript_id AT2G20010.2  protein_id AT2G20010.2p  transcript_id AT2G20010.2  
At2g20020	chr2:008644464	0.0	W/8644464-8645256,8645463-8645590,8645709-8645934,8646035-8646162,8646260-8647090	AT2G20020.1  CDS  gene_syn ATCAF1, CAF1, T2G17.18, T2G17_18  gene CAF1  function Promotes the splicing of chloroplast group II introns. Splices clpP-1 and ropC1 introns.  go_component chloroplast|GO:0009507||IEA  go_process Group II intron splicing|GO:0000373|17071648|IDA  go_function RNA splicing factor activity, transesterification mechanism|GO:0031202|17071648|IDA  product CAF1; RNA splicing factor, transesterification mechanism  note CAF1; FUNCTIONS IN: RNA splicing factor activity, transesterification mechanism; INVOLVED IN: Group II intron splicing; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: CAF2; RNA splicing factor, transesterification mechanism (TAIR:AT1G23400.1); Has 241 Blast hits to 205 proteins in 41 species: Archae - 0; Bacteria - 25; Metazoa - 25; Fungi - 4; Plants - 178; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G20020.1p  transcript_id AT2G20020.1  protein_id AT2G20020.1p  transcript_id AT2G20020.1  
At2g20030	chr2:008647813	0.0	W/8647813-8648985	AT2G20030.1  CDS  gene_syn T2G17.17, T2G17_17  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: stem, flower, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / ubiquitin-protein ligase/ zinc ion binding (TAIR:AT4G28890.1); Has 6487 Blast hits to 6470 proteins in 225 species: Archae - 0; Bacteria - 6; Metazoa - 2160; Fungi - 519; Plants - 2715; Viruses - 51; Other Eukaryotes - 1036 (source: NCBI BLink).  protein_id AT2G20030.1p  transcript_id AT2G20030.1  protein_id AT2G20030.1p  transcript_id AT2G20030.1  
At2g20050	chr2:008653120	0.0	C/8653120-8654193,8652897-8653028,8652581-8652811,8652358-8652483,8652202-8652264,8652039-8652121,8651710-8651941,8651311-8651627,8651145-8651232,8650728-8651075,8650573-8650638,8650364-8650485,8650117-8650273,8649779-8650024	AT2G20050.1  CDS  gene_syn T2G17.15, T2G17_15  go_component plasma membrane|GO:0005886|17317660|IDA  go_process regulation of protein amino acid phosphorylation|GO:0001932||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function ATP binding|GO:0005524||IEA  go_function cAMP-dependent protein kinase regulator activity|GO:0008603||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product ATP binding / cAMP-dependent protein kinase regulator/ catalytic/ protein kinase/ protein serine/threonine phosphatase  note ATP binding / cAMP-dependent protein kinase regulator/ catalytic/ protein kinase/ protein serine/threonine phosphatase; FUNCTIONS IN: cAMP-dependent protein kinase regulator activity, protein kinase activity, protein serine/threonine phosphatase activity, catalytic activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein amino acid dephosphorylation, N-terminal protein myristoylation, regulation of protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), cAMP/cGMP-dependent protein kinase (InterPro:IPR002373), Protein phosphatase 2C-related (InterPro:IPR001932), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein kinase, core (InterPro:IPR000719), Cyclic nucleotide-binding-like (InterPro:IPR018490), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT3G06270.1); Has 47754 Blast hits to 46925 proteins in 1357 species: Archae - 17; Bacteria - 4246; Metazoa - 21070; Fungi - 5337; Plants - 5628; Viruses - 191; Other Eukaryotes - 11265 (source: NCBI BLink).  protein_id AT2G20050.1p  transcript_id AT2G20050.1  protein_id AT2G20050.1p  transcript_id AT2G20050.1  
At2g20060	chr2:008659384	0.0	W/8659384-8659459,8659532-8659587,8659717-8659834,8660226-8660374,8660460-8660567,8660643-8660762,8660864-8661037,8661126-8661227	AT2G20060.1  CDS  gene_syn T2G17.14, T2G17_14  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_component chloroplast|GO:0009507||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L4 family protein  note ribosomal protein L4 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, chloroplast, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4 (InterPro:IPR015498), Ribosomal protein L4/L1e, bacterial-type (InterPro:IPR013005), Ribosomal protein L4/L1e (InterPro:IPR002136); BEST Arabidopsis thaliana protein match is: RPL4; poly(U) binding / structural constituent of ribosome (TAIR:AT1G07320.4); Has 5451 Blast hits to 5451 proteins in 1497 species: Archae - 63; Bacteria - 2944; Metazoa - 100; Fungi - 82; Plants - 60; Viruses - 0; Other Eukaryotes - 2202 (source: NCBI BLink).  protein_id AT2G20060.1p  transcript_id AT2G20060.1  protein_id AT2G20060.1p  transcript_id AT2G20060.1  
At2g20070	chr2:008662038	0.0	W/8662038-8662116,8662234-8662424	AT2G20070.1  CDS  gene_syn T2G17.13, T2G17_13  go_component endomembrane system|GO:0012505||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: LCR81 (Low-molecular-weight cysteine-rich 81) (TAIR:AT2G25295.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20070.1p  transcript_id AT2G20070.1  protein_id AT2G20070.1p  transcript_id AT2G20070.1  
At2g20080	chr2:008664505	0.0	C/8664505-8664735,8663728-8663768,8663562-8663637,8663115-8663222	AT2G20080.2  CDS  gene_syn T2G17.12, T2G17_12  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28840.1); Has 26 Blast hits to 26 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20080.2p  transcript_id AT2G20080.2  protein_id AT2G20080.2p  transcript_id AT2G20080.2  
At2g20080	chr2:008664505	0.0	C/8664505-8664735,8664064-8664144,8663728-8663768,8663562-8663637,8663115-8663222	AT2G20080.1  CDS  gene_syn T2G17.12, T2G17_12  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28840.1); Has 26 Blast hits to 26 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20080.1p  transcript_id AT2G20080.1  protein_id AT2G20080.1p  transcript_id AT2G20080.1  
At2g20100	chr2:008678185	0.0	W/8678185-8678483,8678730-8679003,8679132-8679215,8679967-8680032,8680147-8680212,8680548-8680604,8680809-8680853,8681612-8681809	AT2G20100.1  CDS  gene_syn T2G17.10, T2G17_10  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription regulator activity|GO:0030528||IEA  product ethylene-responsive family protein  note ethylene-responsive family protein; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: ethylene-responsive family protein (TAIR:AT4G29100.1); Has 542 Blast hits to 535 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 2; Plants - 371; Viruses - 2; Other Eukaryotes - 144 (source: NCBI BLink).  protein_id AT2G20100.1p  transcript_id AT2G20100.1  protein_id AT2G20100.1p  transcript_id AT2G20100.1  
At2g20100	chr2:008678185	0.0	W/8678185-8678483,8678730-8679003,8679132-8679215,8679967-8680032,8680147-8680212,8680548-8680604,8680809-8680916	AT2G20100.2  CDS  gene_syn T2G17.10, T2G17_10  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription regulator activity|GO:0030528||IEA  product ethylene-responsive family protein  note ethylene-responsive family protein; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: ethylene-responsive family protein (TAIR:AT4G29100.1); Has 516 Blast hits to 509 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 21; Fungi - 2; Plants - 357; Viruses - 2; Other Eukaryotes - 134 (source: NCBI BLink).  protein_id AT2G20100.2p  transcript_id AT2G20100.2  protein_id AT2G20100.2p  transcript_id AT2G20100.2  
At2g20110	chr2:008684496	0.0	W/8684496-8684779,8684983-8685090,8685190-8685367,8685448-8685795,8685896-8685981,8686066-8686487,8686560-8686870	AT2G20110.2  CDS  gene_syn T2G17.9, T2G17_9  go_component cellular_component|GO:0005575||ND  go_function transcription factor activity|GO:0003700|11118137|ISS  product tesmin/TSO1-like CXC domain-containing protein  note tesmin/TSO1-like CXC domain-containing protein; FUNCTIONS IN: transcription factor activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tesmin/TSO1-like, CXC (InterPro:IPR005172); BEST Arabidopsis thaliana protein match is: tesmin/TSO1-like CXC domain-containing protein (TAIR:AT4G29000.1); Has 779 Blast hits to 544 proteins in 75 species: Archae - 0; Bacteria - 2; Metazoa - 281; Fungi - 1; Plants - 176; Viruses - 1; Other Eukaryotes - 318 (source: NCBI BLink).  protein_id AT2G20110.2p  transcript_id AT2G20110.2  protein_id AT2G20110.2p  transcript_id AT2G20110.2  
At2g20110	chr2:008684496	0.0	W/8684496-8684779,8684983-8685090,8685190-8685367,8685448-8685795,8685896-8685981,8686066-8686487,8686581-8686870	AT2G20110.1  CDS  gene_syn T2G17.9, T2G17_9  go_component cellular_component|GO:0005575||ND  go_function transcription factor activity|GO:0003700|11118137|ISS  product tesmin/TSO1-like CXC domain-containing protein  note tesmin/TSO1-like CXC domain-containing protein; FUNCTIONS IN: transcription factor activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tesmin/TSO1-like, CXC (InterPro:IPR005172); BEST Arabidopsis thaliana protein match is: tesmin/TSO1-like CXC domain-containing protein (TAIR:AT4G29000.1); Has 773 Blast hits to 544 proteins in 77 species: Archae - 0; Bacteria - 2; Metazoa - 272; Fungi - 3; Plants - 176; Viruses - 1; Other Eukaryotes - 319 (source: NCBI BLink).  protein_id AT2G20110.1p  transcript_id AT2G20110.1  protein_id AT2G20110.1p  transcript_id AT2G20110.1  
At2g20120	chr2:008689163	0.0	C/8689163-8689321,8688674-8688726,8688470-8688579,8688214-8688381,8688027-8688124,8687774-8687900,8687568-8687659	AT2G20120.1  CDS  gene_syn CONTINUOUS VASCULAR RING, COV1, T2G17.8, T2G17_8  gene COV1  function Encodes an integral membrane protein of unknown function, highly conserved between plants and bacteria; is likely to be involved in a mechanism that negatively regulates the differentiation of vascular tissue in the stem. Mutants display a dramatic increase in vascular tissue development in the stem in place of the interfascicular region that normally separates the vascular bundles.  go_component integral to membrane|GO:0016021|12668628|ISS  go_process auxin mediated signaling pathway|GO:0009734|12668628|IGI  go_process stem vascular tissue pattern formation|GO:0010222|12668628|IMP  go_function molecular_function|GO:0003674||ND  product COV1 (CONTINUOUS VASCULAR RING)  note CONTINUOUS VASCULAR RING (COV1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: auxin mediated signaling pathway, stem vascular tissue pattern formation; LOCATED IN: integral to membrane; EXPRESSED IN: stem, flower, root, leaf; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF502 (InterPro:IPR007462); BEST Arabidopsis thaliana protein match is: LCV1 (LIKE COV 1) (TAIR:AT2G20130.1); Has 1981 Blast hits to 1981 proteins in 375 species: Archae - 4; Bacteria - 705; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 1187 (source: NCBI BLink).  protein_id AT2G20120.1p  transcript_id AT2G20120.1  protein_id AT2G20120.1p  transcript_id AT2G20120.1  
At2g20130	chr2:008692106	0.0	C/8692106-8692234,8691705-8691757,8691519-8691628,8691269-8691436,8691082-8691179,8690814-8690940,8690614-8690699	AT2G20130.1  CDS  gene_syn LCV1, LIKE COV 1, T2G17.7, T2G17_7  gene LCV1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product LCV1 (LIKE COV 1)  note LIKE COV 1 (LCV1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, flower, root, pollen tube, leaf; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF502 (InterPro:IPR007462); BEST Arabidopsis thaliana protein match is: COV1 (CONTINUOUS VASCULAR RING) (TAIR:AT2G20120.1); Has 1965 Blast hits to 1965 proteins in 370 species: Archae - 6; Bacteria - 694; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 1180 (source: NCBI BLink).  protein_id AT2G20130.1p  transcript_id AT2G20130.1  protein_id AT2G20130.1p  transcript_id AT2G20130.1  
At2g20140	chr2:008692736	0.0	W/8692736-8693209,8693290-8693535,8693938-8694107,8694212-8694428,8694520-8694660,8694754-8694837	AT2G20140.1  CDS  gene_syn T2G17.6, T2G17_6  go_component plasma membrane|GO:0005886|17317660|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function hydrolase activity|GO:0016787||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function ATPase activity|GO:0016887||ISS  product 26S protease regulatory complex subunit 4, putative  note 26S protease regulatory complex subunit 4, putative; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: RPT2a (regulatory particle AAA-ATPase 2a); ATPase (TAIR:AT4G29040.1); Has 21701 Blast hits to 20141 proteins in 1744 species: Archae - 831; Bacteria - 5748; Metazoa - 4078; Fungi - 2440; Plants - 1746; Viruses - 26; Other Eukaryotes - 6832 (source: NCBI BLink).  protein_id AT2G20140.1p  transcript_id AT2G20140.1  protein_id AT2G20140.1p  transcript_id AT2G20140.1  
At2g20142	chr2:008695387	0.0	W/8695387-8695838,8695980-8696052,8696150-8696566	AT2G20142.1  CDS  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  product transmembrane receptor  note transmembrane receptor; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G46510.1); Has 991 Blast hits to 928 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 991; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20142.1p  transcript_id AT2G20142.1  protein_id AT2G20142.1p  transcript_id AT2G20142.1  
At2g20150	chr2:008697610	0.0	W/8697610-8697613,8698212-8698480	AT2G20150.1  CDS  gene_syn T2G17.5, T2G17_5  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20150.1p  transcript_id AT2G20150.1  protein_id AT2G20150.1p  transcript_id AT2G20150.1  
At2g20160	chr2:008699672	0.0	C/8699672-8700124	AT2G20160.1  CDS  gene_syn ARABIDOPSIS SKP1-LIKE 17, ASK17, MEIDOS, MEO, T2G17.4, T2G17_4  gene MEO  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process protein ubiquitination|GO:0016567|12970487|ISS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product MEO (MEIDOS); protein binding / ubiquitin-protein ligase  note MEIDOS (MEO); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: protein ubiquitination; LOCATED IN: cellular_component unknown; EXPRESSED IN: fruit; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: ASK16 (ARABIDOPSIS SKP1-LIKE 16); protein binding / ubiquitin-protein ligase (TAIR:AT2G03190.1); Has 1023 Blast hits to 1023 proteins in 195 species: Archae - 0; Bacteria - 0; Metazoa - 443; Fungi - 104; Plants - 351; Viruses - 11; Other Eukaryotes - 114 (source: NCBI BLink).  protein_id AT2G20160.1p  transcript_id AT2G20160.1  protein_id AT2G20160.1p  transcript_id AT2G20160.1  
At2g20170	chr2:008701013	0.0	W/8701013-8701168,8701608-8701694,8701814-8702035,8702118-8702273,8702361-8702411,8702506-8702652,8703009-8703395	AT2G20170.1  CDS  gene_syn T2G17.3, T2G17_3  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23390.1); Has 422 Blast hits to 386 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 10; Plants - 408; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20170.1p  transcript_id AT2G20170.1  protein_id AT2G20170.1p  transcript_id AT2G20170.1  
At2g20170	chr2:008701013	0.0	W/8701013-8701168,8701608-8701694,8701814-8702035,8702118-8702273,8702361-8702411,8702506-8702652,8703009-8703395	AT2G20170.2  CDS  gene_syn T2G17.3, T2G17_3  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23390.1); Has 422 Blast hits to 386 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 10; Plants - 408; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20170.2p  transcript_id AT2G20170.2  protein_id AT2G20170.2p  transcript_id AT2G20170.2  
At2g20180	chr2:008705647	0.0	C/8705647-8706237,8705437-8705514,8705282-8705347,8705134-8705199,8704689-8705027,8704525-8704608	AT2G20180.1  CDS  gene_syn PHY-INTERACTING FACTOR 1, PHYTOCHROME INTERACTING FACTOR 3-LIKE 5, PIF1, PIL5, T2G17.2, T2G17_2  gene PIL5  function Encodes a novel Myc-related bHLH transcription factor that has transcriptional activation activity in the dark. It is a key negative regulator of phytochrome-mediated seed germination and acts by inhibiting chlorophyll biosynthesis, light-mediated suppression of hypocotyl elongation and far-red light-mediated suppression of seed germination, and promoting negative gravitropism in hypocotyls. Light reduces this activity in a phy-dependent manner. The protein preferentially interacts with the Pfr forms of Phytochrome A (PhyA) and Phytochrome B (PhyB), is physically associated with APRR1/TOC1 and is degraded in red (R) and far-red (FR) light through the ubiquitin (ub)-26S proteasome pathway to optimize photomorphogenic development in Arabidopsis. It also negatively regulates GA3 oxidase expression.  go_component nucleus|GO:0005634|15486102|IDA  go_component nucleus|GO:0005634|16359394|IDA  go_process heme biosynthetic process|GO:0006783|18591656|IMP  go_process gibberellin biosynthetic process|GO:0009686|16740147|IMP  go_process gibberellic acid mediated signaling|GO:0009740|18053005|IMP  go_process negative gravitropism|GO:0009959|16359394|TAS  go_process negative gravitropism|GO:0009959|16740147|IMP  go_process regulation of seed germination|GO:0010029|16359394|TAS  go_process regulation of photomorphogenesis|GO:0010099|16359394|TAS  go_process negative regulation of photomorphogenesis|GO:0010100|18539749|IMP  go_process red light signaling pathway|GO:0010161|18539749|IDA  go_process negative regulation of seed germination|GO:0010187|15486102|IGI  go_process negative regulation of seed germination|GO:0010187|16303558|IMP  go_process chlorophyll biosynthetic process|GO:0015995|15448264|IMP  go_process regulation of transcription|GO:0045449|17449805|IMP  go_function DNA binding|GO:0003677|17449805|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700|12826627|ISS  go_function transcription factor activity|GO:0003700|16359394|TAS  go_function phytochrome binding|GO:0010313|15486102|IDA  product PIL5 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 5); DNA binding / phytochrome binding / transcription factor  note PHYTOCHROME INTERACTING FACTOR 3-LIKE 5 (PIL5); FUNCTIONS IN: phytochrome binding, transcription factor activity, DNA binding; INVOLVED IN: in 11 processes; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: transcription regulator (TAIR:AT4G28811.1); Has 2978 Blast hits to 2964 proteins in 285 species: Archae - 0; Bacteria - 14; Metazoa - 799; Fungi - 179; Plants - 1892; Viruses - 2; Other Eukaryotes - 92 (source: NCBI BLink).  protein_id AT2G20180.1p  transcript_id AT2G20180.1  protein_id AT2G20180.1p  transcript_id AT2G20180.1  
At2g20180	chr2:008706441	0.0	C/8706441-8706538,8705647-8706352,8705437-8705514,8705282-8705347,8705134-8705199,8704689-8705027,8704525-8704608	AT2G20180.2  CDS  gene_syn PHY-INTERACTING FACTOR 1, PHYTOCHROME INTERACTING FACTOR 3-LIKE 5, PIF1, PIL5, T2G17.2, T2G17_2  gene PIL5  function Encodes a novel Myc-related bHLH transcription factor that has transcriptional activation activity in the dark. It is a key negative regulator of phytochrome-mediated seed germination and acts by inhibiting chlorophyll biosynthesis, light-mediated suppression of hypocotyl elongation and far-red light-mediated suppression of seed germination, and promoting negative gravitropism in hypocotyls. Light reduces this activity in a phy-dependent manner. The protein preferentially interacts with the Pfr forms of Phytochrome A (PhyA) and Phytochrome B (PhyB), is physically associated with APRR1/TOC1 and is degraded in red (R) and far-red (FR) light through the ubiquitin (ub)-26S proteasome pathway to optimize photomorphogenic development in Arabidopsis. It also negatively regulates GA3 oxidase expression.  go_component nucleus|GO:0005634|15486102|IDA  go_component nucleus|GO:0005634|16359394|IDA  go_process heme biosynthetic process|GO:0006783|18591656|IMP  go_process gibberellin biosynthetic process|GO:0009686|16740147|IMP  go_process gibberellic acid mediated signaling|GO:0009740|18053005|IMP  go_process negative gravitropism|GO:0009959|16359394|TAS  go_process negative gravitropism|GO:0009959|16740147|IMP  go_process regulation of seed germination|GO:0010029|16359394|TAS  go_process regulation of photomorphogenesis|GO:0010099|16359394|TAS  go_process negative regulation of photomorphogenesis|GO:0010100|18539749|IMP  go_process red light signaling pathway|GO:0010161|18539749|IDA  go_process negative regulation of seed germination|GO:0010187|15486102|IGI  go_process negative regulation of seed germination|GO:0010187|16303558|IMP  go_process chlorophyll biosynthetic process|GO:0015995|15448264|IMP  go_process regulation of transcription|GO:0045449|17449805|IMP  go_function DNA binding|GO:0003677|17449805|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700|12826627|ISS  go_function transcription factor activity|GO:0003700|16359394|TAS  go_function phytochrome binding|GO:0010313|15486102|IDA  product PIL5 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 5); DNA binding / phytochrome binding / transcription factor  note PHYTOCHROME INTERACTING FACTOR 3-LIKE 5 (PIL5); FUNCTIONS IN: phytochrome binding, transcription factor activity, DNA binding; INVOLVED IN: in 11 processes; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT4G28800.1); Has 3053 Blast hits to 3021 proteins in 287 species: Archae - 0; Bacteria - 14; Metazoa - 835; Fungi - 192; Plants - 1900; Viruses - 2; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT2G20180.2p  transcript_id AT2G20180.2  protein_id AT2G20180.2p  transcript_id AT2G20180.2  
At2g20190	chr2:008718481	0.0	C/8718481-8718813,8718254-8718409,8718100-8718162,8717759-8717827,8717424-8717589,8717171-8717332,8716985-8717082,8716565-8716639,8716416-8716484,8716240-8716325,8716041-8716158,8715727-8715825,8715297-8715651,8713395-8715187,8713208-8713306,8712862-8712966,8712675-8712749,8712519-8712587,8712358-8712426,8712139-8712240,8711862-8712020	AT2G20190.1  CDS  gene_syn ATCLASP, CLASP, CLIP-ASSOCIATED PROTEIN, T2G17.1, T2G17_1  gene CLASP  function Encodes a microtubule-associated protein that is involved in both cell division and cell expansion. It likely promotes microtubule stability.  go_component plasma membrane|GO:0005886|17317660|IDA  go_function binding|GO:0005488||IEA  go_component spindle microtubule|GO:0005876|17873093|IDA  go_process mitosis|GO:0007067|17873093|IMP  go_process cell growth|GO:0016049|17873093|IMP  go_process protein stabilization|GO:0050821|17873093|IMP  product CLASP (CLIP-ASSOCIATED PROTEIN); binding  note CLIP-ASSOCIATED PROTEIN (CLASP); FUNCTIONS IN: binding; INVOLVED IN: mitosis, protein stabilization, cell growth; LOCATED IN: spindle microtubule, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); Has 1862 Blast hits to 849 proteins in 166 species: Archae - 10; Bacteria - 97; Metazoa - 619; Fungi - 135; Plants - 100; Viruses - 0; Other Eukaryotes - 901 (source: NCBI BLink).  protein_id AT2G20190.1p  transcript_id AT2G20190.1  protein_id AT2G20190.1p  transcript_id AT2G20190.1  
At2g20208	chr2:008720864	0.0	W/8720864-8720924,8721107-8721300	AT2G20208.1  CDS  gene_syn LCR60, Low-molecular-weight cysteine-rich 60  gene LCR60  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR60 (Low-molecular-weight cysteine-rich 60)  note Low-molecular-weight cysteine-rich 60 (LCR60); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: LCR61 (Low-molecular-weight cysteine-rich 61) (TAIR:AT4G30064.1); Has 19 Blast hits to 19 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20208.1p  transcript_id AT2G20208.1  protein_id AT2G20208.1p  transcript_id AT2G20208.1  
At2g20210	chr2:008724979	0.0	C/8724979-8725042,8724796-8724898,8724600-8724671,8724393-8724512,8724231-8724304,8724036-8724141,8723790-8723832,8723501-8723563,8723199-8723425,8722935-8723055,8722762-8722856,8722571-8722684,8722319-8722483,8722092-8722238,8721854-8721999,8721606-8721760	AT2G20210.1  CDS  gene_syn F11A3.24, F11A3_24  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, ribonuclease inhibitor subtype (InterPro:IPR003590); Has 1691 Blast hits to 1352 proteins in 107 species: Archae - 0; Bacteria - 100; Metazoa - 1035; Fungi - 8; Plants - 127; Viruses - 0; Other Eukaryotes - 421 (source: NCBI BLink).  protein_id AT2G20210.1p  transcript_id AT2G20210.1  protein_id AT2G20210.1p  transcript_id AT2G20210.1  
At2g20230	chr2:008725762	0.0	W/8725762-8726057,8726455-8726554,8726677-8726757,8726844-8726948,8727051-8727239,8727347-8727388	AT2G20230.1  CDS  gene_syn F11A3.22, F11A3_22  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  product unknown protein  note LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28770.1); Has 91 Blast hits to 91 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G20230.1p  transcript_id AT2G20230.1  protein_id AT2G20230.1p  transcript_id AT2G20230.1  
At2g20240	chr2:008728602	0.0	C/8728602-8730086,8728407-8728512,8727778-8728328	AT2G20240.1  CDS  gene_syn F11A3.21, F11A3_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28760.2); Has 254 Blast hits to 206 proteins in 35 species: Archae - 0; Bacteria - 9; Metazoa - 59; Fungi - 22; Plants - 140; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT2G20240.1p  transcript_id AT2G20240.1  protein_id AT2G20240.1p  transcript_id AT2G20240.1  
At2g20250	chr2:008736311	0.0	C/8736311-8736416,8736158-8736235,8735919-8736065,8735708-8735830,8735479-8735565,8735280-8735385,8735146-8735203,8734049-8735068	AT2G20250.1  CDS  gene_syn F11A3.20, F11A3_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, pollen tube; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20250.1p  transcript_id AT2G20250.1  protein_id AT2G20250.1p  transcript_id AT2G20250.1  
At2g20260	chr2:008736780	0.0	W/8736780-8737046,8737397-8737462,8737540-8737644	AT2G20260.1  CDS  gene_syn F11A3.19, F11A3_19, PSAE-2, PSI-E, photosystem I subunit E-2  gene PSAE-2  function Encodes subunit E of photosystem I.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_process photosynthesis|GO:0015979||IEA  go_function catalytic activity|GO:0003824||IEA  go_component photosystem I reaction center|GO:0009538||ISS  go_component plastoglobule|GO:0010287|16461379|IDA  product PSAE-2 (photosystem I subunit E-2); catalytic  note photosystem I subunit E-2 (PSAE-2); FUNCTIONS IN: catalytic activity; INVOLVED IN: photosynthesis; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, photosystem I reaction center; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre subunit IV/PsaE (InterPro:IPR003375), Electron transport accessory protein (InterPro:IPR008990); BEST Arabidopsis thaliana protein match is: PSAE-1 (PSA E1 KNOCKOUT); catalytic (TAIR:AT4G28750.1); Has 378 Blast hits to 378 proteins in 108 species: Archae - 0; Bacteria - 156; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 1; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT2G20260.1p  transcript_id AT2G20260.1  protein_id AT2G20260.1p  transcript_id AT2G20260.1  
At2g20270	chr2:008739331	0.0	C/8739331-8739617,8739147-8739220,8738428-8738502,8738242-8738268,8738001-8738077	AT2G20270.1  CDS  gene_syn F11A3.18, F11A3_18  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  go_function arsenate reductase (glutaredoxin) activity|GO:0008794||ISS  product glutaredoxin family protein  note glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin (InterPro:IPR002109), Glutaredoxin subgroup (InterPro:IPR014025), Glutaredoxin, eukaryotic and viruses (InterPro:IPR011899), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin family protein (TAIR:AT4G28730.1); Has 3895 Blast hits to 3884 proteins in 811 species: Archae - 2; Bacteria - 1749; Metazoa - 403; Fungi - 239; Plants - 508; Viruses - 108; Other Eukaryotes - 886 (source: NCBI BLink).  protein_id AT2G20270.1p  transcript_id AT2G20270.1  protein_id AT2G20270.1p  transcript_id AT2G20270.1  
At2g20280	chr2:008742179	0.0	C/8742179-8742349,8741952-8742036,8741708-8741848,8741525-8741616,8740786-8740977,8740567-8740697,8740368-8740470,8740054-8740254	AT2G20280.1  CDS  gene_syn F11A3.17, F11A3_17  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc finger (CCCH-type) family protein  note zinc finger (CCCH-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); Has 7407 Blast hits to 4150 proteins in 285 species: Archae - 12; Bacteria - 158; Metazoa - 3583; Fungi - 683; Plants - 238; Viruses - 217; Other Eukaryotes - 2516 (source: NCBI BLink).  protein_id AT2G20280.1p  transcript_id AT2G20280.1  protein_id AT2G20280.1p  transcript_id AT2G20280.1  
At2g20290	chr2:008751843	0.0	C/8751843-8751878,8751549-8751674,8751302-8751445,8751064-8751209,8750817-8750973,8750653-8750711,8750373-8750532,8749949-8750098,8749739-8749872,8749477-8749623,8749264-8749365,8748906-8748963,8748720-8748821,8748585-8748622,8748376-8748502,8748106-8748276,8747889-8748020,8747687-8747796,8747540-8747600,8747287-8747464,8746994-8747187,8746727-8746846,8746498-8746596,8746168-8746380,8745921-8746060,8745710-8745821,8745581-8745625,8745412-8745495,8745145-8745315,8744916-8745059,8744657-8744818,8744463-8744573,8744314-8744384,8744123-8744222,8743985-8744041,8743824-8743880,8743655-8743735,8743501-8743565,8743275-8743392	AT2G20290.1  CDS  gene_syn ATXIG, F11A3.16, F11A3_16, MYOSIN XI G, MYOSIN-LIKE PROTEIN XIG, XIG  gene XIG  function member of Myosin-like proteins  go_component endomembrane system|GO:0012505||IEA  go_component myosin complex|GO:0016459||IEA  go_component myosin complex|GO:0016459||ISS  go_process actin filament-based movement|GO:0030048|11516337|TAS  go_function motor activity|GO:0003774|11516337|ISS  go_function motor activity|GO:0003774||ISS  go_function protein binding|GO:0005515||ISS  product XIG; motor/ protein binding  note XIG; FUNCTIONS IN: protein binding, motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: endomembrane system, myosin complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor region (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: XIH; motor (TAIR:AT4G28710.1); Has 14486 Blast hits to 10739 proteins in 762 species: Archae - 96; Bacteria - 599; Metazoa - 9416; Fungi - 970; Plants - 581; Viruses - 24; Other Eukaryotes - 2800 (source: NCBI BLink).  protein_id AT2G20290.1p  transcript_id AT2G20290.1  protein_id AT2G20290.1p  transcript_id AT2G20290.1  
At2g20298	chr2:008754483	0.0	C/8754483-8754907	AT2G20298.1  pseudogenic_transcript  pseudo  function pseudogene of exonuclease family protein  
At2g20300	chr2:008759773	0.0	C/8759773-8759845,8759121-8759225,8758919-8759029,8758400-8758768,8758061-8758318,8757592-8757981,8757256-8757481,8756475-8757177	AT2G20300.1  CDS  gene_syn ALE2, Abnormal Leaf Shape 2, F11A3.15, F11A3_15  gene ALE2  function Encodes ABNORMAL LEAF SHAPE 2 (ALE2), a receptor-like protein kinase (RLK) with a cluster of basic amino acid residues followed by a cysteine-containing sequence in the putative extracellular domain. Function together with ACR4 (Arabidopsis homolog of the Crinkly4) and ALE1 in positively regulating protoderm-specific gene expression and for the formation of leafy organs. ale2 mutants have various epidermal defects, including disorganization of epidermis-related tissues, defects in the leaf cuticle and the fusion of organs.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protoderm histogenesis|GO:0010068|17376810|IMP  go_process cuticle development|GO:0042335|17376810|IMP  go_process shoot development|GO:0048367|17376810|IGI  go_process organ formation|GO:0048645|17376810|IMP  go_function kinase activity|GO:0016301|17376810|IDA  go_function kinase activity|GO:0016301||ISS  product ALE2 (Abnormal Leaf Shape 2); kinase  note Abnormal Leaf Shape 2 (ALE2); FUNCTIONS IN: kinase activity; INVOLVED IN: organ formation, shoot development, protoderm histogenesis, cuticle development; LOCATED IN: plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G56890.1); Has 85885 Blast hits to 84694 proteins in 3055 species: Archae - 54; Bacteria - 7897; Metazoa - 37807; Fungi - 6443; Plants - 18995; Viruses - 326; Other Eukaryotes - 14363 (source: NCBI BLink).  protein_id AT2G20300.1p  transcript_id AT2G20300.1  protein_id AT2G20300.1p  transcript_id AT2G20300.1  
At2g20310	chr2:008762754	0.0	C/8762754-8763083,8762292-8762378,8761328-8762203	AT2G20310.1  CDS  gene_syn F11A3.14, F11A3_14, RIN13, RPM1 INTERACTING PROTEIN 13  gene RIN13  function Encodes RPM1 Interacting Protein 13 (RIN13), a resistance protein interactor shown to positively enhance resistance function of RPM1.  go_component cellular_component|GO:0005575||ND  go_process plant-type hypersensitive response|GO:0009626|15722472|IMP  go_process defense response to bacterium|GO:0042742|15722472|IMP  go_function molecular_function|GO:0003674||ND  product RIN13 (RPM1 INTERACTING PROTEIN 13)  note RPM1 INTERACTING PROTEIN 13 (RIN13); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to bacterium, plant-type hypersensitive response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28690.1); Has 68 Blast hits to 64 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G20310.1p  transcript_id AT2G20310.1  protein_id AT2G20310.1p  transcript_id AT2G20310.1  
At2g20320	chr2:008767106	0.0	W/8767106-8768080,8768209-8768409,8768640-8768723,8768952-8769011,8769113-8769157,8769260-8769456,8769552-8770043,8770163-8770253,8770348-8770527,8770619-8770708,8770863-8770925,8771022-8771096,8771178-8771228,8771424-8771501,8771615-8771749,8771834-8771941,8772032-8772097,8772197-8772271	AT2G20320.1  CDS  gene_syn F11A3.13, F11A3_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: uDENN (InterPro:IPR005113), dDENN (InterPro:IPR005112), DENN (InterPro:IPR001194); BEST Arabidopsis thaliana protein match is: DENN (AEX-3) domain-containing protein (TAIR:AT5G35560.1); Has 454 Blast hits to 447 proteins in 77 species: Archae - 0; Bacteria - 2; Metazoa - 282; Fungi - 41; Plants - 41; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT2G20320.1p  transcript_id AT2G20320.1  protein_id AT2G20320.1p  transcript_id AT2G20320.1  
At2g20330	chr2:008774985	0.0	C/8774985-8775518,8774687-8774899,8774387-8774587,8774176-8774283,8773888-8774025,8773563-8773814,8773155-8773475,8772888-8773067	AT2G20330.1  CDS  gene_syn F11A3.12, F11A3_12  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT2G43770.1); Has 23940 Blast hits to 14550 proteins in 496 species: Archae - 38; Bacteria - 4162; Metazoa - 9990; Fungi - 4392; Plants - 2081; Viruses - 20; Other Eukaryotes - 3257 (source: NCBI BLink).  protein_id AT2G20330.1p  transcript_id AT2G20330.1  protein_id AT2G20330.1p  transcript_id AT2G20330.1  
At2g20340	chr2:008779804	0.0	W/8779804-8779805,8779879-8780011,8780295-8780367,8780461-8780691,8780764-8780927,8781004-8781144,8781216-8781275,8781362-8781526,8781609-8781665,8781764-8781828,8781918-8782041,8782126-8782263,8782371-8782490	AT2G20340.1  CDS  gene_syn F11A3.11, F11A3_11  go_function catalytic activity|GO:0003824||IEA  go_function carboxy-lyase activity|GO:0016831||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_component cellular_component|GO:0005575||ND  go_process amino acid metabolic process|GO:0006520||ISS  go_process response to wounding|GO:0009611|17675405|IEP  go_function tyrosine decarboxylase activity|GO:0004837||ISS  product tyrosine decarboxylase, putative  note tyrosine decarboxylase, putative; FUNCTIONS IN: pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity, tyrosine decarboxylase activity; INVOLVED IN: amino acid metabolic process, response to wounding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aromatic-L-amino-acid decarboxylase (InterPro:IPR010977), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: tyrosine decarboxylase, putative (TAIR:AT4G28680.1); Has 3991 Blast hits to 3974 proteins in 1223 species: Archae - 53; Bacteria - 1092; Metazoa - 1910; Fungi - 168; Plants - 143; Viruses - 5; Other Eukaryotes - 620 (source: NCBI BLink).  protein_id AT2G20340.1p  transcript_id AT2G20340.1  protein_id AT2G20340.1p  transcript_id AT2G20340.1  
At2g20350	chr2:008784769	0.0	W/8784769-8785054,8785206-8785396	AT2G20350.1  CDS  gene_syn F11A3.10, F11A3_10  function encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT5G67010.1); Has 2963 Blast hits to 2959 proteins in 172 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2959; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G20350.1p  transcript_id AT2G20350.1  protein_id AT2G20350.1p  transcript_id AT2G20350.1  
At2g20360	chr2:008786070	0.0	W/8786070-8786172,8786302-8786398,8786885-8786949,8787067-8787152,8787273-8787357,8787471-8787541,8787753-8787884,8788164-8788279,8788374-8788497,8788574-8788642,8788750-8788870,8788959-8789098	AT2G20360.1  CDS  gene_syn F11A3.9, F11A3_9  go_component mitochondrion|GO:0005739|15276431|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  go_component mitochondrion|GO:0005739|12837548|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  product binding / catalytic/ coenzyme binding  note binding / catalytic/ coenzyme binding; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: response to salt stress; LOCATED IN: mitochondrion, respiratory chain complex I, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); Has 3823 Blast hits to 3821 proteins in 711 species: Archae - 40; Bacteria - 1834; Metazoa - 120; Fungi - 89; Plants - 50; Viruses - 0; Other Eukaryotes - 1690 (source: NCBI BLink).  protein_id AT2G20360.1p  transcript_id AT2G20360.1  protein_id AT2G20360.1p  transcript_id AT2G20360.1  
At2g20362	chr2:008789772	0.0	W/8789772-8790155	AT2G20362.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63310.1); Has 15 Blast hits to 15 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20362.1p  transcript_id AT2G20362.1  protein_id AT2G20362.1p  transcript_id AT2G20362.1  
At2g20370	chr2:008792355	0.0	W/8792355-8794214	AT2G20370.1  CDS  gene_syn F11A3.8, F11A3_8, KAM1, KATAMARI 1, MUR3, MURUS 3  gene MUR3  function Encodes a xyloglucan galactosyltransferase located in the membrane of Golgi stacks that is involved in the biosynthesis of fucose. It is also involved in endomembrane organization. It is suggested that it is a dual-function protein that is responsible for actin organization and the synthesis of cell wall materials.  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component membrane|GO:0016020||ISS  go_component integral to Golgi membrane|GO:0030173|15863516|IDA  go_process unidimensional cell growth|GO:0009826|15863516|IMP  go_process salicylic acid mediated signaling pathway|GO:0009863|18657237|IMP  go_process xyloglucan biosynthetic process|GO:0009969|12481058|IMP  go_process endomembrane organization|GO:0010256|15863516|IMP  go_process fucose biosynthetic process|GO:0042353|9301086|IMP  go_function catalytic activity|GO:0003824||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757|12837954|IDA  product MUR3 (MURUS 3); catalytic/ transferase, transferring glycosyl groups  note MURUS 3 (MUR3); FUNCTIONS IN: transferase activity, transferring glycosyl groups, catalytic activity; INVOLVED IN: endomembrane organization, salicylic acid mediated signaling pathway, fucose biosynthetic process, xyloglucan biosynthetic process, unidimensional cell growth; LOCATED IN: Golgi apparatus, integral to Golgi membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: exostosin family protein (TAIR:AT2G29040.1); Has 254 Blast hits to 253 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 4; Plants - 229; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT2G20370.1p  transcript_id AT2G20370.1  protein_id AT2G20370.1p  transcript_id AT2G20370.1  
At2g20380	chr2:008795569	0.0	C/8795569-8795980,8794818-8795452	AT2G20380.1  CDS  gene_syn F11A3.7, F11A3_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT5G48990.1); Has 373 Blast hits to 348 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 373; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20380.1p  transcript_id AT2G20380.1  protein_id AT2G20380.1p  transcript_id AT2G20380.1  
At2g20390	chr2:008798093	0.0	C/8798093-8798142,8797645-8797773,8796768-8796955,8796475-8796659	AT2G20390.1  CDS  gene_syn F11A3.6, F11A3_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 27 Blast hits to 27 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20390.1p  transcript_id AT2G20390.1  protein_id AT2G20390.1p  transcript_id AT2G20390.1  
At2g20400	chr2:008799624	0.0	W/8799624-8800163,8800269-8800494,8800603-8800679,8800770-8800809,8801121-8801178,8801257-8801326,8801439-8801621	AT2G20400.1  CDS  gene_syn F11A3.5, F11A3_5  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: PHR1 (PHOSPHATE STARVATION RESPONSE 1); transcription factor (TAIR:AT4G28610.1); Has 913 Blast hits to 906 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 900; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT2G20400.1p  transcript_id AT2G20400.1  protein_id AT2G20400.1p  transcript_id AT2G20400.1  
At2g20410	chr2:008802561	0.0	W/8802561-8802675,8802797-8802940,8803050-8803117,8803234-8803284,8803366-8803425,8803520-8804059,8804153-8804194	AT2G20410.1  CDS  gene_syn F11A3.4, F11A3_4  go_process biological_process|GO:0008150||ND  product activating signal cointegrator-related  note activating signal cointegrator-related; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ASCH domain (InterPro:IPR007374); Has 193 Blast hits to 192 proteins in 83 species: Archae - 2; Bacteria - 44; Metazoa - 93; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT2G20410.1p  transcript_id AT2G20410.1  protein_id AT2G20410.1p  transcript_id AT2G20410.1  
At2g20420	chr2:008805574	0.0	W/8805574-8805672,8805856-8805966,8806049-8806160,8806258-8806322,8806418-8806495,8806605-8806679,8806786-8806938,8807022-8807156,8807246-8807410,8807497-8807619,8807709-8807858	AT2G20420.1  CDS  gene_syn F11A3.3, F11A3_3  go_component mitochondrion|GO:0005739|17137349|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|11743114|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process metabolic process|GO:0008152||ISS  go_function succinate-CoA ligase (GDP-forming) activity|GO:0004776||ISS  product succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial, putative / succinyl-CoA synthetase, beta chain, putative / SCS-beta, putative  note succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial, putative / succinyl-CoA synthetase, beta chain, putative / SCS-beta, putative; FUNCTIONS IN: succinate-CoA ligase (GDP-forming) activity, ATP binding; INVOLVED IN: response to cadmium ion, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Succinyl-CoA synthetase, beta subunit (InterPro:IPR005809), ATP-citrate lyase/succinyl-CoA ligase (InterPro:IPR005811), Succinyl-CoA synthetase, beta subunit, conserved site (InterPro:IPR017866), ATP-grasp fold (InterPro:IPR011761), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), ATP-grasp fold, succinyl-CoA synthetase-type (InterPro:IPR013650), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: ACLA-1; ATP citrate synthase (TAIR:AT1G10670.2); Has 7404 Blast hits to 7402 proteins in 1294 species: Archae - 110; Bacteria - 2476; Metazoa - 410; Fungi - 154; Plants - 49; Viruses - 0; Other Eukaryotes - 4205 (source: NCBI BLink).  protein_id AT2G20420.1p  transcript_id AT2G20420.1  protein_id AT2G20420.1p  transcript_id AT2G20420.1  
At2g20430	chr2:008809709	0.0	C/8809709-8809781,8809358-8809464,8808667-8809125	AT2G20430.1  CDS  gene_syn RIC6, ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 6, T13C7.2  gene RIC6  function encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Most similar to RIC7 and RIC8 (subfamily group II). Gene is expressed predominantly in inflorescence and flower tissue.  go_component apical plasma membrane|GO:0016324|11752391|IDA  go_process pollen tube growth|GO:0009860|11752391|IMP  product RIC6 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 6)  note ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 6 (RIC6); INVOLVED IN: pollen tube growth; LOCATED IN: apical plasma membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095); BEST Arabidopsis thaliana protein match is: RIC7 (TAIR:AT4G28556.1); Has 371 Blast hits to 287 proteins in 64 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 26; Plants - 104; Viruses - 3; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT2G20430.1p  transcript_id AT2G20430.1  protein_id AT2G20430.1p  transcript_id AT2G20430.1  
At2g20440	chr2:008813141	0.0	C/8813141-8813251,8812928-8813023,8812746-8812849,8812466-8812665,8812256-8812378,8812087-8812175,8811889-8811994,8811727-8811824,8811319-8811564,8811145-8811228,8811034-8811054	AT2G20440.1  CDS  gene_syn T13C7.3, T13C7_3  go_component intracellular|GO:0005622||IEA  go_process regulation of Rab GTPase activity|GO:0032313||IEA  go_function RAB GTPase activator activity|GO:0005097||IEA  product RabGAP/TBC domain-containing protein  note RabGAP/TBC domain-containing protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: RabGAP/TBC domain-containing protein (TAIR:AT4G28550.1); Has 3170 Blast hits to 3076 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 1917; Fungi - 476; Plants - 328; Viruses - 0; Other Eukaryotes - 449 (source: NCBI BLink).  protein_id AT2G20440.1p  transcript_id AT2G20440.1  protein_id AT2G20440.1p  transcript_id AT2G20440.1  
At2g20440	chr2:008813141	0.0	C/8813141-8813251,8812928-8813023,8812746-8812849,8812466-8812665,8812256-8812378,8812087-8812175,8811889-8811994,8811727-8811824,8811319-8811564,8811145-8811228,8811034-8811054	AT2G20440.2  CDS  gene_syn T13C7.3, T13C7_3  go_component intracellular|GO:0005622||IEA  go_process regulation of Rab GTPase activity|GO:0032313||IEA  go_function RAB GTPase activator activity|GO:0005097||IEA  product RabGAP/TBC domain-containing protein  note RabGAP/TBC domain-containing protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: RabGAP/TBC domain-containing protein (TAIR:AT4G28550.1).  protein_id AT2G20440.2p  transcript_id AT2G20440.2  protein_id AT2G20440.2p  transcript_id AT2G20440.2  
At2g20450	chr2:008813923	0.0	W/8813923-8813925,8814079-8814180,8814403-8814532,8814633-8814745,8815015-8815071	AT2G20450.1  CDS  gene_syn T13C7.4, T13C7_4  go_component vacuole|GO:0005773|15215502|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L14 (RPL14A)  note 60S ribosomal protein L14 (RPL14A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, ribosome, endoplasmic reticulum, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L14 (InterPro:IPR002784); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L14 (RPL14B) (TAIR:AT4G27090.1); Has 531 Blast hits to 531 proteins in 234 species: Archae - 58; Bacteria - 0; Metazoa - 210; Fungi - 93; Plants - 65; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT2G20450.1p  transcript_id AT2G20450.1  protein_id AT2G20450.1p  transcript_id AT2G20450.1  
At2g20453	chr2:008815590	0.0	W/8815590-8815793	AT2G20453.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G20453.1p  transcript_id AT2G20453.1  protein_id AT2G20453.1p  transcript_id AT2G20453.1  
At2g20460	chr2:008816237	0.0	C/8816237-8820622	AT2G20460.1  mRNA_TE_gene  pseudo  gene_syn T13C7.5, T13C7_5  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At2g20463	chr2:008824023	0.0	C/8824023-8824122,8823733-8823908	AT2G20463.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20465.1); Has 12 Blast hits to 12 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20463.1p  transcript_id AT2G20463.1  protein_id AT2G20463.1p  transcript_id AT2G20463.1  
At2g20465	chr2:008825414	0.0	C/8825414-8825510,8825144-8825316	AT2G20465.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08028.1); Has 24 Blast hits to 24 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20465.1p  transcript_id AT2G20465.1  protein_id AT2G20465.1p  transcript_id AT2G20465.1  
At2g20470	chr2:008829262	0.0	C/8829262-8829497,8829008-8829182,8828835-8828918,8828509-8828750,8828208-8828421,8828048-8828127,8827544-8827628,8827324-8827455,8827024-8827137,8826867-8826914,8826674-8826758,8826543-8826596,8826277-8826437	AT2G20470.1  CDS  gene_syn T13C7.6, T13C7_6  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product kinase  note kinase; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: male gametophyte; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase, C-terminal (InterPro:IPR017892), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT1G03920.1); Has 80529 Blast hits to 79531 proteins in 2762 species: Archae - 65; Bacteria - 7647; Metazoa - 33811; Fungi - 7913; Plants - 14736; Viruses - 399; Other Eukaryotes - 15958 (source: NCBI BLink).  protein_id AT2G20470.1p  transcript_id AT2G20470.1  protein_id AT2G20470.1p  transcript_id AT2G20470.1  
At2g20480	chr2:008831389	0.0	C/8831389-8831496,8830715-8830798	AT2G20480.1  CDS  gene_syn T13C7.7, T13C7_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; Has 7 Blast hits to 7 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20480.1p  transcript_id AT2G20480.1  protein_id AT2G20480.1p  transcript_id AT2G20480.1  
At2g20490	chr2:008831897	0.0	W/8831897-8831950,8832499-8832541,8832626-8832723	AT2G20490.1  CDS  gene_syn EDA27, EMBRYO SAC DEVELOPMENT ARREST 27, NOP10, T13C7.8, T13C7_8  gene NOP10  go_component nucleolus|GO:0005730|15496452|IDA  go_component nucleolus|GO:0005730|15133128|IDA  go_component Cajal body|GO:0015030|15133128|IDA  go_process polar nucleus fusion|GO:0010197|15634699|IMP  go_function RNA binding|GO:0003723||ISS  product NOP10; RNA binding  note NOP10; FUNCTIONS IN: RNA binding; INVOLVED IN: polar nucleus fusion; LOCATED IN: nucleolus, Cajal body; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleolar RNA-binding protein Nop10p (InterPro:IPR007264); Has 254 Blast hits to 254 proteins in 128 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 74; Plants - 27; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT2G20490.1p  transcript_id AT2G20490.1  protein_id AT2G20490.1p  transcript_id AT2G20490.1  
At2g20490	chr2:008831897	0.0	W/8831897-8831950,8832502-8832541,8832626-8832723	AT2G20490.2  CDS  gene_syn EDA27, EMBRYO SAC DEVELOPMENT ARREST 27, NOP10, T13C7.8, T13C7_8  gene NOP10  go_component nucleolus|GO:0005730|15496452|IDA  go_component nucleolus|GO:0005730|15133128|IDA  go_component Cajal body|GO:0015030|15133128|IDA  go_process polar nucleus fusion|GO:0010197|15634699|IMP  go_function RNA binding|GO:0003723||ISS  product NOP10; RNA binding  note NOP10; FUNCTIONS IN: RNA binding; INVOLVED IN: polar nucleus fusion; LOCATED IN: nucleolus, Cajal body; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleolar RNA-binding protein Nop10p (InterPro:IPR007264); Has 254 Blast hits to 254 proteins in 128 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 74; Plants - 27; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT2G20490.2p  transcript_id AT2G20490.2  protein_id AT2G20490.2p  transcript_id AT2G20490.2  
At2g20495	chr2:008833180	0.0	W/8833180-8833318,8833409-8833482,8833674-8833754,8834050-8834142,8834319-8834438,8834530-8834601,8834684-8834761,8834843-8835034	AT2G20495.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Serine-threonine protein kinase 19 (InterPro:IPR018865); Has 119 Blast hits to 119 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 85; Fungi - 5; Plants - 17; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT2G20495.1p  transcript_id AT2G20495.1  protein_id AT2G20495.1p  transcript_id AT2G20495.1  
At2g20495	chr2:008833180	0.0	W/8833180-8833318,8833409-8833482,8834050-8834142,8834319-8834438,8834530-8834601,8834684-8834761,8834843-8835034	AT2G20495.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Serine-threonine protein kinase 19 (InterPro:IPR018865); Has 106 Blast hits to 106 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 73; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT2G20495.2p  transcript_id AT2G20495.2  protein_id AT2G20495.2p  transcript_id AT2G20495.2  
At2g20500	chr2:008835300	0.0	C/8835300-8835710	AT2G20500.1  CDS  gene_syn T13C7.9, T13C7_9  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20500.1p  transcript_id AT2G20500.1  protein_id AT2G20500.1p  transcript_id AT2G20500.1  
At2g20510	chr2:008838524	0.0	C/8838524-8838598,8838333-8838439,8838153-8838236,8837990-8838065,8837322-8837750,8837181-8837249,8837035-8837099,8836880-8836948,8836729-8836801,8836551-8836655,8836398-8836469,8836248-8836310,8836018-8836149	AT2G20510.1  CDS  gene_syn ARABIDOPSIS THALIANA TRANSLOCASE INNER MEMBRANE SUBUNIT 44-1, ATTIM44-1, T13C7.10, T13C7_10  gene ATTIM44-1  function One of two loci encoding the TIM44 subunit of the mitochondrial inner membrane translocase complex. TIM44 subunit is the part of the complex that hydrolyzes ATP to provide energy for protein translocation to the inner membrane.  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744|12692332|TAS  go_process protein targeting to mitochondrion|GO:0006626|12692332|TAS  go_function protein-transmembrane transporting ATPase activity|GO:0015462|12692332|TAS  product ATTIM44-1; protein-transmembrane transporting ATPase  note ATTIM44-1; FUNCTIONS IN: protein-transmembrane transporting ATPase activity; INVOLVED IN: protein targeting to mitochondrion; LOCATED IN: mitochondrial inner membrane presequence translocase complex; CONTAINS InterPro DOMAIN/s: Mitochondrial import inner membrane translocase, subunit Tim44 (InterPro:IPR007379); BEST Arabidopsis thaliana protein match is: ATTIM44-2; protein-transmembrane transporting ATPase (TAIR:AT2G36070.1); Has 697 Blast hits to 682 proteins in 229 species: Archae - 5; Bacteria - 162; Metazoa - 171; Fungi - 108; Plants - 43; Viruses - 2; Other Eukaryotes - 206 (source: NCBI BLink).  protein_id AT2G20510.1p  transcript_id AT2G20510.1  protein_id AT2G20510.1p  transcript_id AT2G20510.1  
At2g20515	chr2:008839456	0.0	C/8839456-8839595,8839041-8839368	AT2G20515.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; Has 47 Blast hits to 47 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20515.1p  transcript_id AT2G20515.1  protein_id AT2G20515.1p  transcript_id AT2G20515.1  
At2g20520	chr2:008840663	0.0	W/8840663-8841406	AT2G20520.1  CDS  gene_syn FASCICLIN-LIKE ARABINOGALACTAN 6, FLA6, T13C7.11, T13C7_11  gene FLA6  function fasciclin-like arabinogalactan-protein 6 (Fla6)  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  product FLA6 (FASCICLIN-LIKE ARABINOGALACTAN 6)  note FASCICLIN-LIKE ARABINOGALACTAN 6 (FLA6); LOCATED IN: anchored to membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FLA9 (FASCICLIN-LIKE ARABINOOGALACTAN 9) (TAIR:AT1G03870.1); Has 732 Blast hits to 718 proteins in 146 species: Archae - 8; Bacteria - 261; Metazoa - 4; Fungi - 6; Plants - 398; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT2G20520.1p  transcript_id AT2G20520.1  protein_id AT2G20520.1p  transcript_id AT2G20520.1  
At2g20530	chr2:008842300	0.0	W/8842300-8842464,8842751-8842867,8842979-8843149,8843247-8843459,8843593-8843787	AT2G20530.1  CDS  gene_syn ATPHB6, PROHIBITIN 6, T13C7.12, T13C7_12  gene ATPHB6  go_component mitochondrion|GO:0005739|15276431|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|17883375|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process biological_process|GO:0008150||ND  product ATPHB6 (PROHIBITIN 6)  note PROHIBITIN 6 (ATPHB6); INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane, respiratory chain complex I, membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Prohibitin (InterPro:IPR000163), Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: ATPHB1 (PROHIBITIN 1) (TAIR:AT4G28510.1); Has 2400 Blast hits to 2398 proteins in 654 species: Archae - 119; Bacteria - 948; Metazoa - 392; Fungi - 189; Plants - 171; Viruses - 10; Other Eukaryotes - 571 (source: NCBI BLink).  protein_id AT2G20530.1p  transcript_id AT2G20530.1  protein_id AT2G20530.1p  transcript_id AT2G20530.1  
At2g20530	chr2:008842300	0.0	W/8842300-8842464,8842751-8842867,8842979-8843149,8843247-8843459,8843593-8843787	AT2G20530.2  CDS  gene_syn ATPHB6, PROHIBITIN 6, T13C7.12, T13C7_12  gene ATPHB6  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|17883375|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process biological_process|GO:0008150||ND  product ATPHB6 (PROHIBITIN 6)  note PROHIBITIN 6 (ATPHB6); INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane, respiratory chain complex I, membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Prohibitin (InterPro:IPR000163), Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: ATPHB1 (PROHIBITIN 1) (TAIR:AT4G28510.1); Has 2400 Blast hits to 2398 proteins in 654 species: Archae - 119; Bacteria - 948; Metazoa - 392; Fungi - 189; Plants - 171; Viruses - 10; Other Eukaryotes - 571 (source: NCBI BLink).  protein_id AT2G20530.2p  transcript_id AT2G20530.2  protein_id AT2G20530.2p  transcript_id AT2G20530.2  
At2g20540	chr2:008844160	0.0	W/8844160-8845764	AT2G20540.1  CDS  gene_syn T13C7.13, T13C7_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G56310.1); Has 13474 Blast hits to 4964 proteins in 152 species: Archae - 0; Bacteria - 8; Metazoa - 36; Fungi - 64; Plants - 13050; Viruses - 0; Other Eukaryotes - 316 (source: NCBI BLink).  protein_id AT2G20540.1p  transcript_id AT2G20540.1  protein_id AT2G20540.1p  transcript_id AT2G20540.1  
At2g20550	chr2:008846695	0.0	C/8846695-8847113,8846051-8846486	AT2G20550.1  CDS  gene_syn T13C7.14, T13C7_14  go_process protein folding|GO:0006457||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ chaperone C-terminal domain-containing protein  note DNAJ chaperone C-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT2G20560.1); Has 7698 Blast hits to 7627 proteins in 1649 species: Archae - 68; Bacteria - 3560; Metazoa - 890; Fungi - 429; Plants - 401; Viruses - 2; Other Eukaryotes - 2348 (source: NCBI BLink).  protein_id AT2G20550.1p  transcript_id AT2G20550.1  protein_id AT2G20550.1p  transcript_id AT2G20550.1  
At2g20550	chr2:008846695	0.0	C/8846695-8847113,8846051-8846486	AT2G20550.2  CDS  gene_syn T13C7.14, T13C7_14  go_process protein folding|GO:0006457||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ chaperone C-terminal domain-containing protein  note DNAJ chaperone C-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT2G20560.1); Has 7698 Blast hits to 7627 proteins in 1649 species: Archae - 68; Bacteria - 3560; Metazoa - 890; Fungi - 429; Plants - 401; Viruses - 2; Other Eukaryotes - 2348 (source: NCBI BLink).  protein_id AT2G20550.2p  transcript_id AT2G20550.2  protein_id AT2G20550.2p  transcript_id AT2G20550.2  
At2g20555	chr2:008847445	0.0	W/8847445-8848168	AT2G20555.1  pseudogenic_transcript  pseudo  function pseudogene of pentatricopeptide (PPR) repeat-containing protein  
At2g20560	chr2:008849651	0.0	C/8849651-8849815,8848960-8849372,8848353-8848788	AT2G20560.1  CDS  gene_syn T13C7.15, T13C7_15  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock family protein  note DNAJ heat shock family protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT4G28480.1); Has 19640 Blast hits to 19504 proteins in 2051 species: Archae - 119; Bacteria - 5751; Metazoa - 3932; Fungi - 1700; Plants - 1461; Viruses - 15; Other Eukaryotes - 6662 (source: NCBI BLink).  protein_id AT2G20560.1p  transcript_id AT2G20560.1  protein_id AT2G20560.1p  transcript_id AT2G20560.1  
At2g20562	chr2:008850738	0.0	C/8850738-8850835,8850367-8850490	AT2G20562.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31090.1); Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20562.1p  transcript_id AT2G20562.1  protein_id AT2G20562.1p  transcript_id AT2G20562.1  
At2g20570	chr2:008855486	0.0	W/8855486-8855950,8856297-8856437,8856516-8856860,8857003-8857044,8857143-8857256,8857367-8857522	AT2G20570.1  CDS  gene_syn GBF S PRO-RICH REGION-INTERACTING FACTOR 1, GLK1, GOLDEN2-LIKE 1, GPRI1, T13C7.1  gene GPRI1  function Encodes GLK1, Golden2-like 1, one of a pair of partially redundant nuclear transcription factors that regulate chloroplast development in a cell-autonomous manner. GLK2, Golden2-like 2, is encoded by At5g44190. GLK1 and GLK2 regulate the expression of the photosynthetic apparatus.  go_process chloroplast organization|GO:0009658|18643989|IMP  go_process negative regulation of flower development|GO:0009910|18643989|IGI  go_process regulation of chlorophyll biosynthetic process|GO:0010380|19376934|IGI  go_process positive regulation of gene-specific transcription|GO:0043193|19376934|IMP  go_process positive regulation of transcription|GO:0045941|11828027|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|19376934|IMP  go_function promoter binding|GO:0010843|19376934|IDA  go_function transcription regulator activity|GO:0030528|11828027|IDA  product GPRI1 (GBF S PRO-RICH REGION-INTERACTING FACTOR 1); transcription factor/ transcription regulator  note GBF S PRO-RICH REGION-INTERACTING FACTOR 1 (GPRI1); FUNCTIONS IN: transcription factor activity, transcription regulator activity; INVOLVED IN: chloroplast organization, positive regulation of transcription, negative regulation of flower development; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: GLK2 (GOLDEN2-LIKE 2); DNA binding / transcription factor/ transcription regulator (TAIR:AT5G44190.1); Has 1636 Blast hits to 1344 proteins in 118 species: Archae - 0; Bacteria - 17; Metazoa - 154; Fungi - 61; Plants - 1338; Viruses - 12; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT2G20570.1p  transcript_id AT2G20570.1  protein_id AT2G20570.1p  transcript_id AT2G20570.1  
At2g20580	chr2:008859211	0.0	W/8859211-8859327,8859648-8859748,8859888-8860008,8860087-8860146,8860246-8860356,8860560-8860625,8860708-8860829,8860973-8861087,8861242-8861316,8861746-8861904,8862001-8862108,8862180-8862281,8862375-8862515,8862604-8862708,8862791-8863012,8863105-8863218,8863298-8863513,8863614-8863673,8863763-8863876,8863969-8864054,8864145-8864253,8864356-8864534,8864627-8864699	AT2G20580.1  CDS  gene_syn 26S PROTEASOME REGULATORY SUBUNIT S2 1A, ATRPN1A, F23N11.10, F23N11_10, RPN1A  gene RPN1A  function encoding the RPN subunits of the 26S proteasome  go_component plasma membrane|GO:0005886|17317660|IDA  go_function binding|GO:0005488||IEA  go_function enzyme regulator activity|GO:0030234||IEA  go_component nucleus|GO:0005634|11742986|TAS  go_component proteasome regulatory particle, base subcomplex|GO:0008540|9741626|IDA  go_component proteasome regulatory particle, base subcomplex|GO:0008540||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_process protein catabolic process|GO:0030163|11742986|TAS  go_process regulation of cell cycle|GO:0051726|16169895|IMP  product RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A); binding / enzyme regulator  note 26S PROTEASOME REGULATORY SUBUNIT S2 1A (RPN1A); FUNCTIONS IN: enzyme regulator activity, binding; INVOLVED IN: regulation of cell cycle, protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, nucleus, plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunit (InterPro:IPR016643), Proteasome/cyclosome, regulatory subunit (InterPro:IPR002015), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: RPN1B (26S PROTEASOME REGULATORY SUBUNIT S2 1B); binding / enzyme regulator (TAIR:AT4G28470.1); Has 721 Blast hits to 696 proteins in 178 species: Archae - 0; Bacteria - 3; Metazoa - 289; Fungi - 197; Plants - 79; Viruses - 0; Other Eukaryotes - 153 (source: NCBI BLink).  protein_id AT2G20580.1p  transcript_id AT2G20580.1  protein_id AT2G20580.1p  transcript_id AT2G20580.1  
At2g20585	chr2:008865222	0.0	W/8865222-8865382,8865658-8865779,8866093-8866097	AT2G20585.3  CDS  gene_syn NFD6, NUCLEAR FUSION DEFECTIVE 6  gene NFD6  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NFD6 (NUCLEAR FUSION DEFECTIVE 6)  note NUCLEAR FUSION DEFECTIVE 6 (NFD6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.3); Has 59 Blast hits to 59 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20585.3p  transcript_id AT2G20585.3  protein_id AT2G20585.3p  transcript_id AT2G20585.3  
At2g20585	chr2:008865222	0.0	W/8865222-8865382,8865658-8865779,8866348-8866367	AT2G20585.1  CDS  gene_syn NFD6, NUCLEAR FUSION DEFECTIVE 6  gene NFD6  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NFD6 (NUCLEAR FUSION DEFECTIVE 6)  note NUCLEAR FUSION DEFECTIVE 6 (NFD6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.4); Has 51 Blast hits to 51 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20585.1p  transcript_id AT2G20585.1  protein_id AT2G20585.1p  transcript_id AT2G20585.1  
At2g20585	chr2:008865222	0.0	W/8865222-8865382,8865658-8865779,8866574-8866593	AT2G20585.2  CDS  gene_syn NFD6, NUCLEAR FUSION DEFECTIVE 6  gene NFD6  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NFD6 (NUCLEAR FUSION DEFECTIVE 6)  note NUCLEAR FUSION DEFECTIVE 6 (NFD6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.4); Has 51 Blast hits to 51 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20585.2p  transcript_id AT2G20585.2  protein_id AT2G20585.2p  transcript_id AT2G20585.2  
At2g20590	chr2:008868704	0.0	C/8868704-8869166,8868479-8868623,8868329-8868403,8868101-8868242,8867945-8868014,8867781-8867857	AT2G20590.2  CDS  gene_syn F23N11.9, F23N11_9  go_component endoplasmic reticulum|GO:0005783||IEA  go_component chloroplast|GO:0009507||IEA  go_component endoplasmic reticulum|GO:0005783||ISS  go_process biological_process|GO:0008150||ND  product reticulon family protein  note reticulon family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, chloroplast; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: reticulon family protein (TAIR:AT4G28430.1); Has 38 Blast hits to 38 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 2; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20590.2p  transcript_id AT2G20590.2  protein_id AT2G20590.2p  transcript_id AT2G20590.2  
At2g20590	chr2:008868704	0.0	C/8868704-8869166,8868479-8868623,8868329-8868403,8868101-8868242,8867945-8868014,8867792-8867857,8867538-8867660,8867243-8867454	AT2G20590.1  CDS  gene_syn F23N11.9, F23N11_9  go_component endoplasmic reticulum|GO:0005783||IEA  go_component chloroplast|GO:0009507||IEA  go_component endoplasmic reticulum|GO:0005783||ISS  go_process biological_process|GO:0008150||ND  product reticulon family protein  note reticulon family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, chloroplast; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: reticulon family protein (TAIR:AT4G28430.1); Has 156 Blast hits to 136 proteins in 36 species: Archae - 0; Bacteria - 3; Metazoa - 103; Fungi - 4; Plants - 31; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT2G20590.1p  transcript_id AT2G20590.1  protein_id AT2G20590.1p  transcript_id AT2G20590.1  
At2g20595	chr2:008871804	0.0	C/8871804-8871997,8871697-8871712	AT2G20595.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, sepal, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20605.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20595.1p  transcript_id AT2G20595.1  protein_id AT2G20595.1p  transcript_id AT2G20595.1  
At2g20597	chr2:008873060	0.0	W/8873060-8873265,8873402-8873450	AT2G20597.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20619.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20597.1p  transcript_id AT2G20597.1  protein_id AT2G20597.1p  transcript_id AT2G20597.1  
At2g20600	chr2:008875008	0.0	C/8875008-8875242	AT2G20600.1  mRNA_TE_gene  pseudo  gene_syn F23N11.8  note Transposable element gene, pseudogene, hypothetical protein  
At2g20605	chr2:008876490	0.0	W/8876490-8876732	AT2G20605.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20618.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20605.1p  transcript_id AT2G20605.1  protein_id AT2G20605.1p  transcript_id AT2G20605.1  
At2g20610	chr2:008879955	0.0	C/8879955-8880298,8879359-8879698,8879014-8879232,8878867-8878926,8878629-8878784,8878308-8878499	AT2G20610.2  CDS  gene_syn ABERRANT LATERAL ROOT FORMATION 1, ALF1, F23N11.7, F23N11_7, HLS3, HOOKLESS 3, ROOTY, ROOTY 1, RTY, RTY1, SUPERROOT 1, SUR1  gene SUR1  function Confers auxin overproduction. Mutants have an over-proliferation of lateral roots. Encodes a C-S lyase involved in converting S-alkylthiohydroximate to thiohydroximate in glucosinolate biosynthesis.  go_component membrane|GO:0016020|17432890|IDA  go_process regulation of cell growth by extracellular stimulus|GO:0001560|15851402|IMP  go_process indoleacetic acid biosynthetic process|GO:0009684|8589625|IMP  go_process glucosinolate biosynthetic process|GO:0019761|14871316|IMP  go_process adventitious root development|GO:0048830|16377752|TAS  go_function transaminase activity|GO:0008483||ISS  go_function carbon-sulfur lyase activity|GO:0016846|14871316|IDA  go_function S-alkylthiohydroximate lyase activity|GO:0080108|14871316|IMP  product SUR1 (SUPERROOT 1); S-alkylthiohydroximate lyase/ carbon-sulfur lyase/ transaminase  note SUPERROOT 1 (SUR1); FUNCTIONS IN: carbon-sulfur lyase activity, S-alkylthiohydroximate lyase activity, transaminase activity; INVOLVED IN: glucosinolate biosynthetic process, regulation of cell growth by extracellular stimulus, adventitious root development, indoleacetic acid biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Tyrosine/nicotianamine aminotransferase (InterPro:IPR005958), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: aminotransferase, putative (TAIR:AT4G28420.2); Has 24547 Blast hits to 24545 proteins in 1730 species: Archae - 633; Bacteria - 14793; Metazoa - 675; Fungi - 479; Plants - 889; Viruses - 0; Other Eukaryotes - 7078 (source: NCBI BLink).  protein_id AT2G20610.2p  transcript_id AT2G20610.2  protein_id AT2G20610.2p  transcript_id AT2G20610.2  
At2g20610	chr2:008879955	0.0	C/8879955-8880298,8879359-8879698,8879014-8879232,8878867-8878926,8878629-8878784,8878406-8878499,8878150-8878325	AT2G20610.1  CDS  gene_syn ABERRANT LATERAL ROOT FORMATION 1, ALF1, F23N11.7, F23N11_7, HLS3, HOOKLESS 3, ROOTY, ROOTY 1, RTY, RTY1, SUPERROOT 1, SUR1  gene SUR1  function Confers auxin overproduction. Mutants have an over-proliferation of lateral roots. Encodes a C-S lyase involved in converting S-alkylthiohydroximate to thiohydroximate in glucosinolate biosynthesis.  go_component membrane|GO:0016020|17432890|IDA  go_process regulation of cell growth by extracellular stimulus|GO:0001560|15851402|IMP  go_process indoleacetic acid biosynthetic process|GO:0009684|8589625|IMP  go_process glucosinolate biosynthetic process|GO:0019761|14871316|IMP  go_process adventitious root development|GO:0048830|16377752|TAS  go_function transaminase activity|GO:0008483||ISS  go_function carbon-sulfur lyase activity|GO:0016846|14871316|IDA  go_function S-alkylthiohydroximate lyase activity|GO:0080108|14871316|IMP  product SUR1 (SUPERROOT 1); S-alkylthiohydroximate lyase/ carbon-sulfur lyase/ transaminase  note SUPERROOT 1 (SUR1); FUNCTIONS IN: carbon-sulfur lyase activity, S-alkylthiohydroximate lyase activity, transaminase activity; INVOLVED IN: glucosinolate biosynthetic process, regulation of cell growth by extracellular stimulus, adventitious root development, indoleacetic acid biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Tyrosine/nicotianamine aminotransferase (InterPro:IPR005958), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: aminotransferase, putative (TAIR:AT4G28420.2); Has 25125 Blast hits to 25121 proteins in 1735 species: Archae - 635; Bacteria - 14932; Metazoa - 680; Fungi - 497; Plants - 892; Viruses - 0; Other Eukaryotes - 7489 (source: NCBI BLink).  protein_id AT2G20610.1p  transcript_id AT2G20610.1  protein_id AT2G20610.1p  transcript_id AT2G20610.1  
At2g20613	chr2:008886037	0.0	C/8886037-8886444	AT2G20613.1  CDS  gene_syn F23N11.14, F23N11_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); Has 142 Blast hits to 138 proteins in 46 species: Archae - 0; Bacteria - 2; Metazoa - 34; Fungi - 23; Plants - 63; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT2G20613.1p  transcript_id AT2G20613.1  protein_id AT2G20613.1p  transcript_id AT2G20613.1  
At2g20616	chr2:008888093	0.0	C/8888093-8888305,8887801-8887875,8887607-8887717,8887272-8887373,8887116-8887187	AT2G20616.1  CDS  gene_syn F23N11.13, F23N11_13  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF566 (InterPro:IPR007573); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20815.1); Has 12 Blast hits to 9 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20616.1p  transcript_id AT2G20616.1  protein_id AT2G20616.1p  transcript_id AT2G20616.1  
At2g20618	chr2:008888933	0.0	W/8888933-8889178	AT2G20618.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20605.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20618.1p  transcript_id AT2G20618.1  protein_id AT2G20618.1p  transcript_id AT2G20618.1  
At2g20619	chr2:008891191	0.0	W/8891191-8891391	AT2G20619.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20618.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20619.1p  transcript_id AT2G20619.1  protein_id AT2G20619.1p  transcript_id AT2G20619.1  
At2g20620	chr2:008893086	0.0	C/8893086-8893244,8892923-8893009,8892622-8892814,8892391-8892512,8892225-8892308,8891929-8892144	AT2G20620.1  CDS  gene_syn F23N11.6, F23N11_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29550.1); Has 54 Blast hits to 54 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20620.1p  transcript_id AT2G20620.1  protein_id AT2G20620.1p  transcript_id AT2G20620.1  
At2g20625	chr2:008896984	0.0	C/8896984-8897218,8896584-8896664,8896413-8896501,8896154-8896321	AT2G20625.1  CDS  gene_syn F23N11.15, F23N11_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20620.1); Has 21 Blast hits to 21 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20625.1p  transcript_id AT2G20625.1  protein_id AT2G20625.1p  transcript_id AT2G20625.1  
At2g20630	chr2:008899616	0.0	C/8899616-8899648,8898663-8898899,8898289-8898565,8898046-8898200,8897826-8897963	AT2G20630.1  CDS  gene_syn F23N11.5, F23N11_5  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT4G28400.1); Has 4830 Blast hits to 4816 proteins in 510 species: Archae - 3; Bacteria - 699; Metazoa - 1232; Fungi - 547; Plants - 1305; Viruses - 11; Other Eukaryotes - 1033 (source: NCBI BLink).  protein_id AT2G20630.1p  transcript_id AT2G20630.1  protein_id AT2G20630.1p  transcript_id AT2G20630.1  
At2g20630	chr2:008899616	0.0	C/8899616-8899648,8898663-8898899,8898289-8898565,8898046-8898200,8897841-8897963,8897335-8897382	AT2G20630.2  CDS  gene_syn F23N11.5, F23N11_5  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT4G28400.1); Has 4713 Blast hits to 4703 proteins in 480 species: Archae - 2; Bacteria - 613; Metazoa - 1221; Fungi - 542; Plants - 1306; Viruses - 11; Other Eukaryotes - 1018 (source: NCBI BLink).  protein_id AT2G20630.2p  transcript_id AT2G20630.2  protein_id AT2G20630.2p  transcript_id AT2G20630.2  
At2g20635	chr2:008900410	0.0	W/8900410-8900462,8900562-8900709,8900877-8901034,8901132-8901222,8901313-8901426,8901518-8901605,8901825-8901928,8902006-8902077,8902152-8902241,8902331-8902488,8902613-8902667,8902746-8902880,8902977-8903098,8903195-8903384	AT2G20635.1  CDS  gene_syn F23N11.4, F23N11_4  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  product ATP binding / protein kinase/ protein serine/threonine kinase  note ATP binding / protein kinase/ protein serine/threonine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Mitotic checkpoint serine/threonine protein kinase, Bub1 (InterPro:IPR015661), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Mad3/BUB1 homology region 1 (InterPro:IPR013212), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: spindle checkpoint protein-related (TAIR:AT2G33560.1); Has 240 Blast hits to 240 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 109; Fungi - 80; Plants - 45; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT2G20635.1p  transcript_id AT2G20635.1  protein_id AT2G20635.1p  transcript_id AT2G20635.1  
At2g20650	chr2:008906889	0.0	C/8906889-8907017,8906575-8906647,8906362-8906489,8906140-8906255,8905984-8906044,8905790-8905856,8905636-8905713,8905368-8905525,8905216-8905275,8905037-8905130,8904684-8904851,8904255-8904583,8903954-8904172	AT2G20650.1  CDS  gene_syn F23N11.3  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G28370.1); Has 2552 Blast hits to 2525 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 965; Fungi - 238; Plants - 847; Viruses - 11; Other Eukaryotes - 491 (source: NCBI BLink).  protein_id AT2G20650.1p  transcript_id AT2G20650.1  protein_id AT2G20650.1p  transcript_id AT2G20650.1  
At2g20650	chr2:008906889	0.0	C/8906889-8907017,8906575-8906647,8906362-8906489,8906140-8906255,8905984-8906044,8905790-8905856,8905636-8905713,8905368-8905525,8905216-8905275,8905037-8905130,8904684-8904851,8904255-8904583,8903954-8904172	AT2G20650.2  CDS  gene_syn F23N11.3  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G28370.1); Has 2552 Blast hits to 2525 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 965; Fungi - 238; Plants - 847; Viruses - 11; Other Eukaryotes - 491 (source: NCBI BLink).  protein_id AT2G20650.2p  transcript_id AT2G20650.2  protein_id AT2G20650.2p  transcript_id AT2G20650.2  
At2g20660	chr2:008909467	0.0	W/8909467-8909772	AT2G20660.1  CDS  gene_syn F23N11.2, F23N11_2, RALFL14, ralf-like 14  gene RALFL14  function Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  go_component apoplast|GO:0048046|12611624|ISS  go_process cell-cell signaling|GO:0007267|12611624|ISS  go_function signal transducer activity|GO:0004871|12611624|TAS  product RALFL14 (ralf-like 14); signal transducer  note ralf-like 14 (RALFL14); FUNCTIONS IN: signal transducer activity; INVOLVED IN: cell-cell signaling; LOCATED IN: apoplast; CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALFL18 (ralf-like 18); signal transducer (TAIR:AT2G33130.1); Has 41 Blast hits to 41 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20660.1p  transcript_id AT2G20660.1  protein_id AT2G20660.1p  transcript_id AT2G20660.1  
At2g20670	chr2:008913257	0.0	C/8913257-8913472,8912914-8913142,8912163-8912602	AT2G20670.1  CDS  gene_syn F23N11.1  go_component chloroplast|GO:0009507|18431481|IDA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32480.1); Has 203 Blast hits to 203 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 201; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G20670.1p  transcript_id AT2G20670.1  protein_id AT2G20670.1p  transcript_id AT2G20670.1  
At2g20680	chr2:008921024	0.0	W/8921024-8921386,8921713-8921910,8922133-8922255,8922371-8922582,8922661-8923066	AT2G20680.1  CDS  gene_syn F5H14.35, F5H14_35  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 5 protein / cellulase family protein  note glycosyl hydrolase family 5 protein / cellulase family protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, family 5, conserved site (InterPro:IPR018087), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 5 protein / cellulase family protein (TAIR:AT4G28320.1); Has 488 Blast hits to 482 proteins in 126 species: Archae - 4; Bacteria - 123; Metazoa - 33; Fungi - 118; Plants - 187; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT2G20680.1p  transcript_id AT2G20680.1  protein_id AT2G20680.1p  transcript_id AT2G20680.1  
At2g20690	chr2:008923342	0.0	W/8923342-8924140,8924605-8924621	AT2G20690.1  CDS  gene_syn F5H14.34, F5H14_34  function A synthetic gene encoding the catalytic domain of the Arabidopsis thaliana gene At2g20690 was recombinant expressed in E. coli demonstrating the molecular function of riboflavin synthase.  go_component chloroplast|GO:0009507|18431481|IDA  go_process riboflavin biosynthetic process|GO:0009231|15927885|IDA  go_function riboflavin synthase activity|GO:0004746|15927885|IDA  go_function binding|GO:0005488||ISS  product lumazine-binding family protein  note lumazine-binding family protein; FUNCTIONS IN: binding, riboflavin synthase activity; INVOLVED IN: riboflavin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Lumazine-binding protein (InterPro:IPR001783); Has 4777 Blast hits to 4686 proteins in 1207 species: Archae - 28; Bacteria - 2326; Metazoa - 0; Fungi - 95; Plants - 19; Viruses - 0; Other Eukaryotes - 2309 (source: NCBI BLink).  protein_id AT2G20690.1p  transcript_id AT2G20690.1  protein_id AT2G20690.1p  transcript_id AT2G20690.1  
At2g20700	chr2:008925645	0.0	C/8925645-8925714,8925478-8925534,8925003-8925367	AT2G20700.1  CDS  gene_syn F5H14.33, F5H14_33  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28280.1); Has 71 Blast hits to 71 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20700.1p  transcript_id AT2G20700.1  protein_id AT2G20700.1p  transcript_id AT2G20700.1  
At2g20710	chr2:008926110	0.0	W/8926110-8926382,8926523-8927722	AT2G20710.1  CDS  gene_syn F5H14.32, F5H14_32  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G28020.1); Has 5414 Blast hits to 2764 proteins in 83 species: Archae - 0; Bacteria - 2; Metazoa - 29; Fungi - 31; Plants - 5230; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT2G20710.1p  transcript_id AT2G20710.1  protein_id AT2G20710.1p  transcript_id AT2G20710.1  
At2g20710	chr2:008926535	0.0	W/8926535-8927722	AT2G20710.2  CDS  gene_syn F5H14.32, F5H14_32  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G28020.1); Has 5495 Blast hits to 2707 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 31; Plants - 5318; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT2G20710.2p  transcript_id AT2G20710.2  protein_id AT2G20710.2p  transcript_id AT2G20710.2  
At2g20720	chr2:008928009	0.0	C/8928009-8928908	AT2G20720.1  CDS  gene_syn F5H14.31, F5H14_31  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G20710.2); Has 111 Blast hits to 111 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 110; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G20720.1p  transcript_id AT2G20720.1  protein_id AT2G20720.1p  transcript_id AT2G20720.1  
At2g20721	chr2:008931565	0.0	C/8931565-8931655	AT2G20721.1  snoRNA  gene_syn 49260.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT2G20721.1  
At2g20722	chr2:008931708	0.0	C/8931708-8931782	AT2G20722.1  snoRNA  gene_syn 49260.SNORNA00002  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT2G20722.1  
At2g20723	chr2:008931849	0.0	C/8931849-8931922	AT2G20723.1  snoRNA  gene_syn 49260.SNORNA00003  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT2G20723.1  
At2g20724	chr2:008932716	0.0	C/8932716-8933262	AT2G20724.1  pseudogenic_transcript  pseudo  function pseudogene of unknown protein  note expressed protein  
At2g20725	chr2:008935259	0.0	C/8935259-8935426,8934988-8935170,8934518-8934739,8934113-8934445	AT2G20725.1  CDS  gene_syn F5H14.3, F5H14_3  go_component chloroplast|GO:0009507||IEA  go_component membrane|GO:0016020||IEA  go_process proteolysis|GO:0006508||ISS  go_function molecular_function|GO:0003674||ND  product CAAX amino terminal protease family protein  note CAAX amino terminal protease family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: proteolysis; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675); BEST Arabidopsis thaliana protein match is: CAAX amino terminal protease family protein (TAIR:AT1G14270.1); Has 1283 Blast hits to 1283 proteins in 385 species: Archae - 14; Bacteria - 1012; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).  protein_id AT2G20725.1p  transcript_id AT2G20725.1  protein_id AT2G20725.1p  transcript_id AT2G20725.1  
At2g20740	chr2:008935788	0.0	W/8935788-8935954,8936436-8936535,8936710-8936790,8936883-8936987,8937080-8937292	AT2G20740.1  CDS  gene_syn AT2G20730, F5H14.29, F5H14_29  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20230.1); Has 91 Blast hits to 91 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G20740.1p  transcript_id AT2G20740.1  protein_id AT2G20740.1p  transcript_id AT2G20740.1  
At2g20740	chr2:008935911	0.0	W/8935911-8935954,8936436-8936535,8936710-8936790,8936883-8936987,8937080-8937292	AT2G20740.2  CDS  gene_syn AT2G20730, F5H14.29, F5H14_29  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20230.1); Has 90 Blast hits to 90 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G20740.2p  transcript_id AT2G20740.2  protein_id AT2G20740.2p  transcript_id AT2G20740.2  
At2g20740	chr2:008936713	0.0	W/8936713-8936790,8936883-8936987,8937080-8937292	AT2G20740.3  CDS  gene_syn AT2G20730, F5H14.29, F5H14_29  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20230.1); Has 82 Blast hits to 82 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20740.3p  transcript_id AT2G20740.3  protein_id AT2G20740.3p  transcript_id AT2G20740.3  
At2g20750	chr2:008941185	0.0	W/8941185-8941356,8941471-8941780,8942015-8942144,8942227-8942430	AT2G20750.1  CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN B1, ATEXPB1, ATHEXP BETA 1.5, EXPANSIN B1, EXPB1, F5H14.28, F5H14_28  gene ATEXPB1  function member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_process plant-type cell wall organization|GO:0009664||ISS  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828||ISS  product ATEXPB1 (ARABIDOPSIS THALIANA EXPANSIN B1)  note ARABIDOPSIS THALIANA EXPANSIN B1 (ATEXPB1); INVOLVED IN: plant-type cell wall organization, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: ATEXPB3 (ARABIDOPSIS THALIANA EXPANSIN B3) (TAIR:AT4G28250.1); Has 1418 Blast hits to 1414 proteins in 119 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 8; Plants - 1379; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT2G20750.1p  transcript_id AT2G20750.1  protein_id AT2G20750.1p  transcript_id AT2G20750.1  
At2g20760	chr2:008944762	0.0	C/8944762-8945108,8943881-8944034,8943279-8943794	AT2G20760.1  CDS  gene_syn F5H14.27, F5H14_27  go_component plasma membrane|GO:0005886|17317660|IDA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function structural molecule activity|GO:0005198||IEA  go_function protein binding|GO:0005515||IEA  product protein binding / structural molecule  note protein binding / structural molecule; FUNCTIONS IN: protein binding, structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin light chain (InterPro:IPR000996); BEST Arabidopsis thaliana protein match is: protein binding / structural molecule (TAIR:AT3G51890.1); Has 1552 Blast hits to 1056 proteins in 209 species: Archae - 0; Bacteria - 461; Metazoa - 500; Fungi - 90; Plants - 101; Viruses - 0; Other Eukaryotes - 400 (source: NCBI BLink).  protein_id AT2G20760.1p  transcript_id AT2G20760.1  protein_id AT2G20760.1p  transcript_id AT2G20760.1  
At2g20770	chr2:008945380	0.0	W/8945380-8945532,8945618-8945796,8945893-8946004,8946084-8946200,8946279-8946596,8946703-8947041	AT2G20770.1  CDS  gene_syn F5H14.26, F5H14_26, GCL2, GCR2-LIKE 2  gene GCL2  function Encodes a protein with reported similarity to GCR2 a putative G protein coupled receptor thought to be an ABA receptor.GCL2 also has similarity to LANCL1 and LANCL2, human homologs of bacterial lanthionine synthetase.  go_function catalytic activity|GO:0003824||IEA  go_component extrinsic to membrane|GO:0019898|17894782|ISS  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product GCL2 (GCR2-LIKE 2); catalytic  note GCR2-LIKE 2 (GCL2); FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: extrinsic to membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase-like (InterPro:IPR008928), Lanthionine synthetase C-like (InterPro:IPR007822); BEST Arabidopsis thaliana protein match is: GPCR (G PROTEIN COUPLED RECEPTOR); abscisic acid binding / catalytic (TAIR:AT1G52920.1); Has 432 Blast hits to 427 proteins in 129 species: Archae - 0; Bacteria - 99; Metazoa - 231; Fungi - 33; Plants - 43; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT2G20770.1p  transcript_id AT2G20770.1  protein_id AT2G20770.1p  transcript_id AT2G20770.1  
At2g20780	chr2:008948957	0.0	C/8948957-8949170,8947496-8948862	AT2G20780.1  CDS  gene_syn F5H14.25, F5H14_25  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product mannitol transporter, putative  note mannitol transporter, putative; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ATPLT5 (POLYOL TRANSPORTER 5); D-ribose transmembrane transporter/ D-xylose transmembrane transporter/ carbohydrate transmembrane transporter/ galactose transmembrane transporter/ glucose transmembrane transporter/ glycerol transmembrane transporter/ mannitol transmembrane transporter/ monosaccharide transmembrane transporter/ myo-inositol transmembrane transporter/ sorbitol transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT3G18830.1); Has 26744 Blast hits to 26333 proteins in 1492 species: Archae - 393; Bacteria - 13196; Metazoa - 4822; Fungi - 5202; Plants - 1590; Viruses - 2; Other Eukaryotes - 1539 (source: NCBI BLink).  protein_id AT2G20780.1p  transcript_id AT2G20780.1  protein_id AT2G20780.1p  transcript_id AT2G20780.1  
At2g20784	chr2:008949621	0.0	W/8949621-8949776	AT2G20784.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G20784.1p  transcript_id AT2G20784.1  protein_id AT2G20784.1p  transcript_id AT2G20784.1  
At2g20790	chr2:008951951	0.0	C/8951951-8952054,8951576-8951859,8950574-8951469	AT2G20790.3  CDS  gene_syn F5H14.24, F5H14_24  go_component clathrin adaptor complex|GO:0030131||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function protein binding|GO:0005515||IEA  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: clathrin adaptor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, conserved site (InterPro:IPR018240), Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968); Has 198 Blast hits to 198 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 103; Fungi - 25; Plants - 21; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT2G20790.3p  transcript_id AT2G20790.3  protein_id AT2G20790.3p  transcript_id AT2G20790.3  
At2g20790	chr2:008951951	0.0	C/8951951-8952054,8951576-8951859,8950601-8951469,8950470-8950526,8950339-8950386,8950162-8950227	AT2G20790.2  CDS  gene_syn F5H14.24, F5H14_24  go_component clathrin adaptor complex|GO:0030131||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function protein binding|GO:0005515||IEA  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: clathrin adaptor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, conserved site (InterPro:IPR018240), Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968); Has 201 Blast hits to 201 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 25; Plants - 21; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT2G20790.2p  transcript_id AT2G20790.2  protein_id AT2G20790.2p  transcript_id AT2G20790.2  
At2g20790	chr2:008952546	0.0	C/8952546-8952613,8952345-8952473,8951951-8952271,8951576-8951859,8950601-8951469,8950470-8950526,8950339-8950386,8950162-8950227	AT2G20790.1  CDS  gene_syn F5H14.24, F5H14_24  go_component clathrin adaptor complex|GO:0030131||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function protein binding|GO:0005515||IEA  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: clathrin adaptor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, conserved site (InterPro:IPR018240), Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968); Has 201 Blast hits to 201 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 25; Plants - 21; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT2G20790.1p  transcript_id AT2G20790.1  protein_id AT2G20790.1p  transcript_id AT2G20790.1  
At2g20800	chr2:008955611	0.0	C/8955611-8955699,8954505-8955248,8954208-8954427,8954013-8954117,8953656-8953916,8953252-8953581	AT2G20800.1  CDS  gene_syn F5H14.23, F5H14_23, NAD(P)H dehydrogenase B4, NDB4  gene NDB4  go_component mitochondrion|GO:0005739|15276431|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_component extrinsic to mitochondrial inner membrane|GO:0031314|16258072|IDA  go_function NADH dehydrogenase activity|GO:0003954||ISS  product NDB4 (NAD(P)H dehydrogenase B4); NADH dehydrogenase  note NAD(P)H dehydrogenase B4 (NDB4); FUNCTIONS IN: NADH dehydrogenase activity; LOCATED IN: extrinsic to mitochondrial inner membrane, mitochondrion, plastid; EXPRESSED IN: 7 plant structures; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: NDB3; NADH dehydrogenase (TAIR:AT4G21490.1); Has 6313 Blast hits to 5938 proteins in 1236 species: Archae - 167; Bacteria - 4494; Metazoa - 37; Fungi - 382; Plants - 242; Viruses - 0; Other Eukaryotes - 991 (source: NCBI BLink).  protein_id AT2G20800.1p  transcript_id AT2G20800.1  protein_id AT2G20800.1p  transcript_id AT2G20800.1  
At2g20805	chr2:008956339	0.0	W/8956339-8956737	AT2G20805.1  CDS  gene_syn F5H14.4, F5H14_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related (TAIR:AT1G11510.1); Has 25 Blast hits to 25 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20805.1p  transcript_id AT2G20805.1  protein_id AT2G20805.1p  transcript_id AT2G20805.1  
At2g20810	chr2:008957927	0.0	W/8957927-8958079,8958153-8959610	AT2G20810.1  CDS  gene_syn F5H14.44, GALACTURONOSYLTRANSFERASE 10, GAUT10, LGT4  gene GAUT10  function Encodes a protein with putative galacturonosyltransferase activity.  go_component mitochondrion|GO:0005739||IEA  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS  product GAUT10 (GALACTURONOSYLTRANSFERASE 10); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note GALACTURONOSYLTRANSFERASE 10 (GAUT10); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: GAUT11 (Galacturonosyltransferase 11); polygalacturonate 4-alpha-galacturonosyltransferase (TAIR:AT1G18580.1); Has 708 Blast hits to 704 proteins in 102 species: Archae - 0; Bacteria - 141; Metazoa - 126; Fungi - 0; Plants - 429; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT2G20810.1p  transcript_id AT2G20810.1  protein_id AT2G20810.1p  transcript_id AT2G20810.1  
At2g20815	chr2:008959988	0.0	W/8959988-8960923,8961048-8961167,8961261-8961377,8961474-8961563,8961648-8961755,8961840-8961917	AT2G20815.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF566 (InterPro:IPR007573); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20616.1); Has 206 Blast hits to 167 proteins in 23 species: Archae - 0; Bacteria - 2; Metazoa - 74; Fungi - 0; Plants - 111; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT2G20815.1p  transcript_id AT2G20815.1  protein_id AT2G20815.1p  transcript_id AT2G20815.1  
At2g20816	chr2:008962763	0.0	W/8962763-8963527	AT2G20816.1  pseudogenic_transcript  pseudo  function pseudogene of protein containing methyl-CpG-binding domain  
At2g20818	chr2:008963652	0.0	C/8963652-8964024	AT2G20818.1  pseudogenic_transcript  pseudo  function pseudogene of protein containing methyl-CpG-binding domain  
At2g20820	chr2:008964450	0.0	W/8964450-8964558,8964809-8964879,8964978-8965055,8965143-8965166	AT2G20820.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 32 Blast hits to 32 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20820.1p  transcript_id AT2G20820.1  protein_id AT2G20820.1p  transcript_id AT2G20820.1  
At2g20820	chr2:008964450	0.0	W/8964450-8964558,8964809-8964879,8965022-8965055,8965143-8965237	AT2G20820.2  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 28 Blast hits to 28 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20820.2p  transcript_id AT2G20820.2  protein_id AT2G20820.2p  transcript_id AT2G20820.2  
At2g20825	chr2:008966594	0.0	C/8966594-8966795,8965845-8966329	AT2G20825.1  CDS  gene_syn F5H14.2, F5H14_2, ULT2, ULTRAPETALA 2  gene ULT2  go_function DNA binding|GO:0003677||IEA  go_component nucleus|GO:0005634|15673576|IDA  go_component cytosol|GO:0005829|15673576|IDA  go_process biological_process|GO:0008150||ND  product ULT2 (ULTRAPETALA 2); DNA binding  note ULTRAPETALA 2 (ULT2); FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SAND (InterPro:IPR000770); BEST Arabidopsis thaliana protein match is: ULT1 (ULTRAPETALA1); DNA binding (TAIR:AT4G28190.1); Has 21 Blast hits to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20825.1p  transcript_id AT2G20825.1  protein_id AT2G20825.1p  transcript_id AT2G20825.1  
At2g20830	chr2:008969417	0.0	C/8969417-8969798,8968370-8968881	AT2G20830.1  CDS  gene_syn F5H14.20, F5H14_20  go_process metabolic process|GO:0008152||IEA  go_function folic acid binding|GO:0005542||IEA  go_function transferase activity|GO:0016740||IEA  go_component cellular_component|GO:0005575||ND  product folic acid binding / transferase  note folic acid binding / transferase; FUNCTIONS IN: folic acid binding, transferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Formiminotransferase, N-terminal (InterPro:IPR012886), Formiminotransferase (InterPro:IPR004227); Has 406 Blast hits to 403 proteins in 99 species: Archae - 8; Bacteria - 128; Metazoa - 81; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).  protein_id AT2G20830.1p  transcript_id AT2G20830.1  protein_id AT2G20830.1p  transcript_id AT2G20830.1  
At2g20830	chr2:008970091	0.0	C/8970091-8970479,8969417-8969811,8968370-8968881	AT2G20830.2  CDS  gene_syn F5H14.20, F5H14_20  go_process metabolic process|GO:0008152||IEA  go_function folic acid binding|GO:0005542||IEA  go_function transferase activity|GO:0016740||IEA  go_component cellular_component|GO:0005575||ND  product folic acid binding / transferase  note folic acid binding / transferase; FUNCTIONS IN: folic acid binding, transferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Formiminotransferase, N-terminal (InterPro:IPR012886), Protein of unknown function DUF1715, eukaryotic (InterPro:IPR013179), Formiminotransferase (InterPro:IPR004227); Has 518 Blast hits to 515 proteins in 123 species: Archae - 8; Bacteria - 128; Metazoa - 139; Fungi - 30; Plants - 55; Viruses - 0; Other Eukaryotes - 158 (source: NCBI BLink).  protein_id AT2G20830.2p  transcript_id AT2G20830.2  protein_id AT2G20830.2p  transcript_id AT2G20830.2  
At2g20835	chr2:008971059	0.0	C/8971059-8971265	AT2G20835.1  CDS  gene_syn F5H14.1, F5H14_1  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15534.1); Has 29 Blast hits to 29 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20835.1p  transcript_id AT2G20835.1  protein_id AT2G20835.1p  transcript_id AT2G20835.1  
At2g20840	chr2:008974347	0.0	C/8974347-8974400,8973743-8973844,8973595-8973657,8973291-8973324,8973084-8973206,8972923-8972985,8972746-8972839,8972541-8972586,8972381-8972448,8972258-8972306,8972111-8972176,8971925-8972011	AT2G20840.1  CDS  gene_syn F5H14.19, F5H14_19  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein transport|GO:0015031||IEA  go_function transmembrane transporter activity|GO:0022857||ISS  product secretory carrier membrane protein (SCAMP) family protein  note secretory carrier membrane protein (SCAMP) family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273); BEST Arabidopsis thaliana protein match is: secretory carrier membrane protein (SCAMP) family protein (TAIR:AT1G03550.1); Has 529 Blast hits to 529 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 338; Fungi - 12; Plants - 123; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT2G20840.1p  transcript_id AT2G20840.1  protein_id AT2G20840.1p  transcript_id AT2G20840.1  
At2g20850	chr2:008979071	0.0	C/8979071-8979182,8978857-8978986,8978707-8978778,8978556-8978621,8978402-8978473,8978254-8978325,8978103-8978174,8977948-8978013,8977793-8977858,8977271-8977686,8976823-8977181,8976332-8976742,8976109-8976245,8975872-8976028,8975670-8975789	AT2G20850.1  CDS  gene_syn F5H14.18, F5H14_18, SRF1, strubbelig receptor family 1  gene SRF1  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product SRF1 (strubbelig receptor family 1); kinase  note strubbelig receptor family 1 (SRF1); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: SRF3 (STRUBBELIG-RECEPTOR FAMILY 3); ATP binding / kinase/ protein serine/threonine kinase (TAIR:AT4G03390.1); Has 100577 Blast hits to 74217 proteins in 2866 species: Archae - 48; Bacteria - 5795; Metazoa - 34047; Fungi - 4617; Plants - 43545; Viruses - 264; Other Eukaryotes - 12261 (source: NCBI BLink).  protein_id AT2G20850.1p  transcript_id AT2G20850.1  protein_id AT2G20850.1p  transcript_id AT2G20850.1  
At2g20860	chr2:008979636	0.0	W/8979636-8980051,8980118-8980329,8980404-8980783,8980867-8980983	AT2G20860.1  CDS  gene_syn F5H14.17, F5H14_17, LIP1, LIPOIC ACID SYNTHASE 1  gene LIP1  function LIP1,Lipoic acid synthase,  go_component mitochondrion|GO:0005739|9808738|IEP  go_component mitochondrial matrix|GO:0005759|9808738|IEP  go_process glycine catabolic process|GO:0006546|9808738|TAS  go_process lipoic acid biosynthetic process|GO:0009105|9808738|TAS  go_function lipoic acid synthase activity|GO:0017140|9808738|IGI  product LIP1 (LIPOIC ACID SYNTHASE 1); lipoic acid synthase  note LIPOIC ACID SYNTHASE 1 (LIP1); FUNCTIONS IN: lipoic acid synthase activity; INVOLVED IN: lipoic acid biosynthetic process, glycine catabolic process; LOCATED IN: mitochondrion, mitochondrial matrix; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Lipoate synthase (InterPro:IPR003698), Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Radical SAM (InterPro:IPR007197); BEST Arabidopsis thaliana protein match is: lipoic acid synthase family protein (TAIR:AT5G08415.1); Has 5683 Blast hits to 5683 proteins in 1186 species: Archae - 36; Bacteria - 2370; Metazoa - 113; Fungi - 91; Plants - 53; Viruses - 0; Other Eukaryotes - 3020 (source: NCBI BLink).  protein_id AT2G20860.1p  transcript_id AT2G20860.1  protein_id AT2G20860.1p  transcript_id AT2G20860.1  
At2g20870	chr2:008982239	0.0	C/8982239-8982661	AT2G20870.1  CDS  gene_syn F5H14.16, F5H14_16  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product cell wall protein precursor, putative  note cell wall protein precursor, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT4G28160.1); Has 60 Blast hits to 60 proteins in 14 species: Archae - 0; Bacteria - 27; Metazoa - 5; Fungi - 2; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20870.1p  transcript_id AT2G20870.1  protein_id AT2G20870.1p  transcript_id AT2G20870.1  
At2g20875	chr2:008983492	0.0	C/8983492-8983579,8983179-8983405	AT2G20875.1  CDS  gene_syn EPF1, EPIDERMAL PATTERNING FACTOR 1  gene EPF1  go_process stomatal complex patterning|GO:0010375|17639078|IMP  go_function molecular_function|GO:0003674||ND  product EPF1 (EPIDERMAL PATTERNING FACTOR 1)  note EPIDERMAL PATTERNING FACTOR 1 (EPF1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: stomatal complex patterning; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible, LP.12 twelve leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34245.1); Has 25 Blast hits to 25 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G20875.1p  transcript_id AT2G20875.1  protein_id AT2G20875.1p  transcript_id AT2G20875.1  
At2g20880	chr2:008986053	0.0	W/8986053-8987063	AT2G20880.1  CDS  gene_syn F5H14.15, F5H14_15  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleus|GO:0005634||ISS  go_component cytoplasm|GO:0005737|15610358|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT4G28140.1); Has 3873 Blast hits to 3741 proteins in 208 species: Archae - 0; Bacteria - 2; Metazoa - 6; Fungi - 2; Plants - 3838; Viruses - 2; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT2G20880.1p  transcript_id AT2G20880.1  protein_id AT2G20880.1p  transcript_id AT2G20880.1  
At2g20890	chr2:008987783	0.0	W/8987783-8987969,8988081-8988348,8988440-8988656,8988825-8988940,8989071-8989185	AT2G20890.1  CDS  gene_syn F5H14.14, F5H14_14, PSB29, THF1, THYLAKOID FORMATION1  gene PSB29  function Chloroplast-localized Thylakoid formation1 gene product involved in vesicle-mediated formation of thylakoid membranes. Thf1 antisense lines contain abnormal chloroplasts early in leaf development (chloroplasts have loosely stacked thylakoid membranes). Expression was induced in the light and decreased under dark conditions. G-alpha interaction partner that functions downstream of the plasma membrane delimited heterotrimeric G-protein (GPA1) in a D-glucose signaling pathway. Localized to both the outer plastid membrane and the stroma. Probably involved in the metabolic pathway that controls the assembly of the PS II complex.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast|GO:0009507|15516501|IDA  go_component plastid outer membrane|GO:0009527|16582010|IDA  go_component plastid inner membrane|GO:0009528|16582010|IDA  go_component plastid stroma|GO:0009532|16582010|IDA  go_component chloroplast thylakoid|GO:0009534|16155179|ISS  go_component stromule|GO:0010319|15516501|IDA  go_component stromule|GO:0010319|16582010|IDA  go_process G-protein coupled receptor protein signaling pathway|GO:0007186|16582010|IPI  go_process thylakoid membrane organization|GO:0010027|15516501|IMP  go_process sugar mediated signaling|GO:0010182|16582010|IMP  go_process photosystem II assembly|GO:0010207|16155179|TAS  go_process protein import into chloroplast stroma|GO:0045037|15516501|IDA  go_process protein import into chloroplast thylakoid membrane|GO:0045038|15516501|IDA  go_function molecular_function|GO:0003674||ND  product PSB29  note PSB29; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 6 processes; LOCATED IN: in 9 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II biogenesis protein Psp29 (InterPro:IPR017499); Has 275 Blast hits to 275 proteins in 74 species: Archae - 0; Bacteria - 116; Metazoa - 1; Fungi - 0; Plants - 36; Viruses - 6; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT2G20890.1p  transcript_id AT2G20890.1  protein_id AT2G20890.1p  transcript_id AT2G20890.1  
At2g20900	chr2:008992475	0.0	C/8992475-8992798,8992269-8992397,8992090-8992175,8991870-8991996,8991722-8991770,8991429-8991511,8991251-8991318,8990729-8990803,8990454-8990541,8990214-8990330,8989794-8990123	AT2G20900.2  CDS  gene_syn F5H14.13, F5H14_13  go_process activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|GO:0007205||IEA  go_function diacylglycerol kinase activity|GO:0004143||IEA  go_component cellular_component|GO:0005575||ND  go_process activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|GO:0007205||ISS  go_function diacylglycerol kinase activity|GO:0004143||ISS  product diacylglycerol kinase, putative  note diacylglycerol kinase, putative; FUNCTIONS IN: diacylglycerol kinase activity; INVOLVED IN: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Diacylglycerol kinase, catalytic region (InterPro:IPR001206), Diacylglycerol kinase accessory region (InterPro:IPR000756), Diacylglycerol kinase, plant (InterPro:IPR016961); BEST Arabidopsis thaliana protein match is: diacylglycerol kinase accessory domain-containing protein (TAIR:AT4G28130.1); Has 1130 Blast hits to 974 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 857; Fungi - 0; Plants - 142; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).  protein_id AT2G20900.2p  transcript_id AT2G20900.2  protein_id AT2G20900.2p  transcript_id AT2G20900.2  
At2g20900	chr2:008992475	0.0	C/8992475-8992798,8992269-8992397,8992090-8992175,8991870-8991996,8991722-8991770,8991429-8991511,8991251-8991318,8990729-8990803,8990454-8990541,8990214-8990330,8989794-8990123	AT2G20900.3  CDS  gene_syn F5H14.13, F5H14_13  go_process activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|GO:0007205||IEA  go_function diacylglycerol kinase activity|GO:0004143||IEA  go_component cellular_component|GO:0005575||ND  go_process activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|GO:0007205||ISS  go_function diacylglycerol kinase activity|GO:0004143||ISS  product diacylglycerol kinase, putative  note diacylglycerol kinase, putative; FUNCTIONS IN: diacylglycerol kinase activity; INVOLVED IN: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Diacylglycerol kinase, catalytic region (InterPro:IPR001206), Diacylglycerol kinase accessory region (InterPro:IPR000756), Diacylglycerol kinase, plant (InterPro:IPR016961); BEST Arabidopsis thaliana protein match is: diacylglycerol kinase accessory domain-containing protein (TAIR:AT4G28130.1); Has 1130 Blast hits to 974 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 857; Fungi - 0; Plants - 142; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).  protein_id AT2G20900.3p  transcript_id AT2G20900.3  protein_id AT2G20900.3p  transcript_id AT2G20900.3  
At2g20900	chr2:008992475	0.0	C/8992475-8992798,8992269-8992397,8992090-8992175,8991870-8991996,8991722-8991770,8991429-8991511,8991251-8991318,8990729-8990803,8990454-8990541,8990214-8990330,8989818-8990123,8989412-8989489	AT2G20900.1  CDS  gene_syn F5H14.13, F5H14_13  go_process activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|GO:0007205||IEA  go_function diacylglycerol kinase activity|GO:0004143||IEA  go_component cellular_component|GO:0005575||ND  go_process activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|GO:0007205||ISS  go_function diacylglycerol kinase activity|GO:0004143||ISS  product diacylglycerol kinase, putative  note diacylglycerol kinase, putative; FUNCTIONS IN: diacylglycerol kinase activity; INVOLVED IN: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Diacylglycerol kinase, catalytic region (InterPro:IPR001206), Diacylglycerol kinase accessory region (InterPro:IPR000756), Diacylglycerol kinase, plant (InterPro:IPR016961); BEST Arabidopsis thaliana protein match is: diacylglycerol kinase accessory domain-containing protein (TAIR:AT4G28130.1); Has 1130 Blast hits to 974 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 857; Fungi - 0; Plants - 142; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).  protein_id AT2G20900.1p  transcript_id AT2G20900.1  protein_id AT2G20900.1p  transcript_id AT2G20900.1  
At2g20900	chr2:008992475	0.0	C/8992475-8992798,8992269-8992397,8992090-8992175,8991870-8991996,8991722-8991770,8991429-8991511,8991251-8991318,8990729-8990803,8990454-8990541,8990214-8990330,8989818-8990123,8989412-8989489	AT2G20900.4  CDS  gene_syn F5H14.13, F5H14_13  go_process activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|GO:0007205||IEA  go_function diacylglycerol kinase activity|GO:0004143||IEA  go_component cellular_component|GO:0005575||ND  go_process activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|GO:0007205||ISS  go_function diacylglycerol kinase activity|GO:0004143||ISS  product diacylglycerol kinase, putative  note diacylglycerol kinase, putative; FUNCTIONS IN: diacylglycerol kinase activity; INVOLVED IN: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Diacylglycerol kinase, catalytic region (InterPro:IPR001206), Diacylglycerol kinase accessory region (InterPro:IPR000756), Diacylglycerol kinase, plant (InterPro:IPR016961); BEST Arabidopsis thaliana protein match is: diacylglycerol kinase accessory domain-containing protein (TAIR:AT4G28130.1); Has 1130 Blast hits to 974 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 857; Fungi - 0; Plants - 142; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).  protein_id AT2G20900.4p  transcript_id AT2G20900.4  protein_id AT2G20900.4p  transcript_id AT2G20900.4  
At2g20910	chr2:008994148	0.0	C/8994148-8996804	AT2G20910.1  pseudogenic_transcript  pseudo  gene_syn F5H14.12  note pseudogene, vacuolar ATP synthase subunit B, blastp match of 94% identity and 2.9e-211 P-value to GP|13366196|dbj|BAB39419.1||AP002901 putative H+-transporting ATP synthase {Oryza sativa (japonica cultivar-group)}  
At2g20920	chr2:008998728	0.0	W/8998728-8999063,8999195-8999546,8999614-8999789	AT2G20920.1  CDS  gene_syn F5H14.11, F5H14_11  go_component membrane|GO:0016020|17432890|IDA  product unknown protein  note unknown protein; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 178 Blast hits to 177 proteins in 58 species: Archae - 0; Bacteria - 89; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT2G20920.1p  transcript_id AT2G20920.1  protein_id AT2G20920.1p  transcript_id AT2G20920.1  
At2g20921	chr2:009000025	0.0	C/9000025-9000228	AT2G20921.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G20921.1p  transcript_id AT2G20921.1  protein_id AT2G20921.1p  transcript_id AT2G20921.1  
At2g20930	chr2:009001624	0.0	C/9001624-9001656,9001429-9001525,9001262-9001340,9001092-9001173,9000790-9000921	AT2G20930.1  CDS  gene_syn F5H14.10, F5H14_10  go_component intracellular|GO:0005622||IEA  go_process transport|GO:0006810||IEA  go_process ER to Golgi vesicle-mediated transport|GO:0006888||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, ER to Golgi vesicle-mediated transport; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sedlin (InterPro:IPR006722), Longin-like (InterPro:IPR011012); Has 370 Blast hits to 370 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 216; Fungi - 55; Plants - 47; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT2G20930.1p  transcript_id AT2G20930.1  protein_id AT2G20930.1p  transcript_id AT2G20930.1  
At2g20940	chr2:009002264	0.0	C/9002264-9002653	AT2G20940.1  CDS  gene_syn F26H11.30, F26H11_30  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1279 (InterPro:IPR009688); Has 166 Blast hits to 166 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 85; Fungi - 30; Plants - 42; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G20940.1p  transcript_id AT2G20940.1  protein_id AT2G20940.1p  transcript_id AT2G20940.1  
At2g20950	chr2:009003295	0.0	W/9003295-9003340,9003430-9003653,9003731-9003817,9003899-9003970,9004106-9004228,9004308-9004544,9004626-9005354	AT2G20950.3  CDS  gene_syn F26H11.29  product unknown protein  note EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38550.1); Has 386 Blast hits to 377 proteins in 92 species: Archae - 7; Bacteria - 14; Metazoa - 202; Fungi - 67; Plants - 80; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT2G20950.3p  transcript_id AT2G20950.3  protein_id AT2G20950.3p  transcript_id AT2G20950.3  
At2g20950	chr2:009003295	0.0	W/9003295-9003340,9003430-9003653,9003731-9003817,9003899-9003970,9004106-9004228,9004314-9004544,9004626-9005354	AT2G20950.2  CDS  gene_syn F26H11.29  product unknown protein  note EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38550.1); Has 441 Blast hits to 418 proteins in 91 species: Archae - 9; Bacteria - 20; Metazoa - 242; Fungi - 74; Plants - 78; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT2G20950.2p  transcript_id AT2G20950.2  protein_id AT2G20950.2p  transcript_id AT2G20950.2  
At2g20950	chr2:009003295	0.0	W/9003295-9003340,9003430-9003653,9003731-9003817,9003899-9003970,9004106-9004228,9004314-9005354	AT2G20950.4  CDS  gene_syn F26H11.29  product unknown protein  note EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38550.1); Has 323 Blast hits to 303 proteins in 73 species: Archae - 7; Bacteria - 10; Metazoa - 165; Fungi - 53; Plants - 73; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT2G20950.4p  transcript_id AT2G20950.4  protein_id AT2G20950.4p  transcript_id AT2G20950.4  
At2g20950	chr2:009003295	0.0	W/9003295-9003340,9003430-9003653,9003731-9003817,9003899-9004021,9004106-9004228,9004314-9004544,9004626-9005354	AT2G20950.1  CDS  gene_syn F26H11.29  product unknown protein  note EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38550.1); Has 618 Blast hits to 562 proteins in 105 species: Archae - 7; Bacteria - 22; Metazoa - 391; Fungi - 75; Plants - 96; Viruses - 2; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT2G20950.1p  transcript_id AT2G20950.1  protein_id AT2G20950.1p  transcript_id AT2G20950.1  
At2g20960	chr2:009007089	0.0	W/9007089-9007218,9007307-9007578,9007668-9008639,9008739-9009611	AT2G20960.1  CDS  gene_syn F26H11.28, F26H11_28, pEARLI4  gene pEARLI4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pEARLI4  note pEARLI4; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38560.1); Has 13761 Blast hits to 8502 proteins in 657 species: Archae - 35; Bacteria - 1349; Metazoa - 6441; Fungi - 2438; Plants - 938; Viruses - 338; Other Eukaryotes - 2222 (source: NCBI BLink).  protein_id AT2G20960.1p  transcript_id AT2G20960.1  protein_id AT2G20960.1p  transcript_id AT2G20960.1  
At2g20970	chr2:009009867	0.0	W/9009867-9010067,9010147-9010372,9010448-9011067	AT2G20970.2  CDS  gene_syn F26H11.27, F26H11_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, sepal; EXPRESSED DURING: petal differentiation and expansion stage.  protein_id AT2G20970.2p  transcript_id AT2G20970.2  protein_id AT2G20970.2p  transcript_id AT2G20970.2  
At2g20970	chr2:009009867	0.0	W/9009867-9010067,9010147-9010372,9010454-9011067	AT2G20970.1  CDS  gene_syn F26H11.27, F26H11_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, sepal; EXPRESSED DURING: petal differentiation and expansion stage; Has 157 Blast hits to 139 proteins in 52 species: Archae - 6; Bacteria - 20; Metazoa - 43; Fungi - 10; Plants - 6; Viruses - 2; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT2G20970.1p  transcript_id AT2G20970.1  protein_id AT2G20970.1p  transcript_id AT2G20970.1  
At2g20980	chr2:009013766	0.0	C/9013766-9013856,9013352-9013532,9013163-9013237,9012842-9013079,9012637-9012761,9012526-9012559,9012396-9012442,9012169-9012306,9012018-9012082,9011875-9011938,9011654-9011786	AT2G20980.1  CDS  gene_syn F26H11.26, F26H11_26, MCM10  gene MCM10  function Similar to MCM10, which in other organism was shown to be involved in the initiation of DNA replication.  go_component cellular_component|GO:0005575||ND  go_process DNA replication initiation|GO:0006270|17556508|TAS  go_function molecular_function|GO:0003674||ND  product MCM10  note MCM10; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA replication initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Mcm10/DnaG-type (InterPro:IPR015408); Has 231 Blast hits to 231 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 78; Plants - 24; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT2G20980.1p  transcript_id AT2G20980.1  protein_id AT2G20980.1p  transcript_id AT2G20980.1  
At2g20990	chr2:009014827	0.0	W/9014827-9014937,9015209-9015307,9015401-9015451,9015547-9015670,9015822-9015940,9016042-9016143,9016256-9016330,9016642-9016718,9016806-9017052,9017125-9017613,9017698-9017829	AT2G20990.1  CDS  gene_syn ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, ATSYTA, F26H11.25, NTMC2T1.1, NTMC2TYPE1.1, SYNAPTOTAGMIN 1, SYNAPTOTAGMIN A, SYT1, SYTA  gene SYTA  function Encodes a plasma membrane localized protein with similarity to synaptotagmins, a class of membrane trafficking proteins. SYT1 is expressed in all tissues. Loss of function mutations show hypersensitivity to NaCl and electrolyte leakage from the plasma membrane. SYT1 also affects calcium dependent freezing tolerance. SYT1 probably plays a role in membrane repair such as membrane resealing after freezing induced damage.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process protein targeting to membrane|GO:0006612|11543631|ISS  go_function molecular_function|GO:0003674||ND  go_component plasma membrane|GO:0005886|19088329|IDA  go_process plasma membrane repair|GO:0001778|19088329|IMP  go_process response to cold|GO:0009409|19088329|IMP  product SYTA (SYNAPTOTAGMIN A)  note SYNAPTOTAGMIN A (SYTA); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein targeting to membrane, plasma membrane repair, response to cold; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: whole plant, guard cell, cultured cell, callus, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: SYTB (TAIR:AT1G20080.1); Has 5379 Blast hits to 3913 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 3799; Fungi - 510; Plants - 716; Viruses - 0; Other Eukaryotes - 354 (source: NCBI BLink).  protein_id AT2G20990.1p  transcript_id AT2G20990.1  protein_id AT2G20990.1p  transcript_id AT2G20990.1  
At2g20993	chr2:009018578	0.0	W/9018578-9019036	AT2G20993.1  pseudogenic_transcript  pseudo  function Pseudogene of AT2G21045  
At2g21000	chr2:009019506	0.0	W/9019506-9020219	AT2G21000.1  mRNA_TE_gene  pseudo  gene_syn F5H14.39  note Transposable element gene, copia-like retrotransposon family, has a 1.8e-22 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At2g21010	chr2:009020944	0.0	W/9020944-9021117,9021194-9021658,9021739-9021870	AT2G21010.1  CDS  gene_syn F26H11.23, F26H11_23  function C2 domain-containing protein. Possible pseudogene of AT2G20990.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: SYTA (SYNAPTOTAGMIN A) (TAIR:AT2G20990.1); Has 3012 Blast hits to 2488 proteins in 173 species: Archae - 0; Bacteria - 0; Metazoa - 2315; Fungi - 189; Plants - 321; Viruses - 0; Other Eukaryotes - 187 (source: NCBI BLink).  protein_id AT2G21010.1p  transcript_id AT2G21010.1  protein_id AT2G21010.1p  transcript_id AT2G21010.1  
At2g21020	chr2:009022778	0.0	C/9022778-9024211	AT2G21020.1  pseudogenic_transcript  pseudo  gene_syn F26H11.22, F26H11_22  note pseudogene, major intrinsic protein (MIP) family, contains Pfam profile: MIP PF00230; blastp match of 61% identity and 1.8e-40 P-value to PIR|S01444|S01444 nodulin-26 precursor - soybean  
At2g21030	chr2:009025484	0.0	C/9025484-9025578,9025257-9025386,9024904-9025155	AT2G21030.1  CDS  gene_syn F26H11.21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591); BEST Arabidopsis thaliana protein match is: BRX (BREVIS RADIX); identical protein binding / water channel (TAIR:AT1G31880.1); Has 115 Blast hits to 115 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G21030.1p  transcript_id AT2G21030.1  protein_id AT2G21030.1p  transcript_id AT2G21030.1  
At2g21040	chr2:009026157	0.0	W/9026157-9026434,9026542-9026589,9026680-9026778,9026867-9026956,9027040-9027310	AT2G21040.1  CDS  gene_syn F26H11.20, F26H11_20  function C2 domain-containing protein. Possible pseudogene of AT2G20990.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT2G21010.1); Has 246 Blast hits to 245 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 152; Fungi - 2; Plants - 88; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G21040.1p  transcript_id AT2G21040.1  protein_id AT2G21040.1p  transcript_id AT2G21040.1  
At2g21045	chr2:009027858	0.0	W/9027858-9027967,9028055-9028132,9028213-9028286,9028375-9028445,9028556-9028609,9028683-9028805	AT2G21045.1  CDS  go_process aging|GO:0007568|11439127|TAS  go_process aging|GO:0007568||ISS  product unknown protein  note INVOLVED IN: aging; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66170.2); Has 1919 Blast hits to 1917 proteins in 542 species: Archae - 34; Bacteria - 1258; Metazoa - 17; Fungi - 21; Plants - 115; Viruses - 0; Other Eukaryotes - 474 (source: NCBI BLink).  protein_id AT2G21045.1p  transcript_id AT2G21045.1  protein_id AT2G21045.1p  transcript_id AT2G21045.1  
At2g21050	chr2:009034289	0.0	W/9034289-9034447,9034551-9034736,9034828-9034940,9035023-9035206,9035505-9035602,9035728-9036439	AT2G21050.1  CDS  gene_syn F26H11.19, F26H11_19  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_process response to nematode|GO:0009624|16478044|IEP  go_function transporter activity|GO:0005215||ISS  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product amino acid permease, putative  note amino acid permease, putative; FUNCTIONS IN: amino acid transmembrane transporter activity, transporter activity; INVOLVED IN: amino acid transport, response to nematode; LOCATED IN: membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: LAX3 (LIKE AUX1 3); amino acid transmembrane transporter/ auxin influx transmembrane transporter/ transporter (TAIR:AT1G77690.1); Has 610 Blast hits to 606 proteins in 96 species: Archae - 0; Bacteria - 0; Metazoa - 90; Fungi - 150; Plants - 350; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT2G21050.1p  transcript_id AT2G21050.1  protein_id AT2G21050.1p  transcript_id AT2G21050.1  
At2g21060	chr2:009036983	0.0	C/9036983-9037588	AT2G21060.1  CDS  gene_syn ATGRP2B, F26H11.18, F26H11_18, GLYCINE-RICH PROTEIN 2B  gene ATGRP2B  function glycine-rich protein (AtGRP2b)  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_function nucleic acid binding|GO:0003676||ISS  product ATGRP2B (GLYCINE-RICH PROTEIN 2B); DNA binding / nucleic acid binding / zinc ion binding  note GLYCINE-RICH PROTEIN 2B (ATGRP2B); FUNCTIONS IN: DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cold shock protein (InterPro:IPR011129), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Zinc finger, CCHC-type (InterPro:IPR001878), Cold-shock protein, DNA-binding (InterPro:IPR002059), Zinc finger, CCHC retroviral-type (InterPro:IPR013084); BEST Arabidopsis thaliana protein match is: GRP2 (GLYCINE RICH PROTEIN 2); double-stranded DNA binding / mRNA binding / nucleic acid binding / single-stranded DNA binding (TAIR:AT4G38680.1); Has 109677 Blast hits to 41851 proteins in 2229 species: Archae - 158; Bacteria - 34974; Metazoa - 34781; Fungi - 6760; Plants - 10418; Viruses - 1449; Other Eukaryotes - 21137 (source: NCBI BLink).  protein_id AT2G21060.1p  transcript_id AT2G21060.1  protein_id AT2G21060.1p  transcript_id AT2G21060.1  
At2g21070	chr2:009040940	0.0	W/9040940-9041166,9041248-9041453,9041555-9041978,9042070-9042277,9042392-9042455,9042593-9042606	AT2G21070.2  CDS  gene_syn F26H11.17, F26H11_17, FIO1, FIONA1  gene FIO1  function This gene is predicted to an encode a nuclear-localized protein that is involved in regulating the period of circadian rhythms without affecting their amplitude or robustness. FIONA1 seems to act as a central oscillator-associated component, but its transcript levels are not regulated in a circadian or light-dependent manner. FIONA1 also appears to be involved in photoperiod-dependent flowering.  go_function methyltransferase activity|GO:0008168||IEA  go_component nucleus|GO:0005634|18281507|IDA  go_process circadian rhythm|GO:0007623|18281507|IMP  go_process photoperiodism|GO:0009648|18281507|IMP  go_process photoperiodism, flowering|GO:0048573|18281507|IMP  product FIO1 (FIONA1); methyltransferase  note FIONA1 (FIO1); FUNCTIONS IN: methyltransferase activity; INVOLVED IN: photoperiodism, flowering, circadian rhythm, photoperiodism; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosyl-L-methionine dependent methyltransferase, Mett10D, predicted (InterPro:IPR017182), S-adenosyl-L-methionine dependent methyltransferase, predicted (InterPro:IPR010286); Has 852 Blast hits to 846 proteins in 382 species: Archae - 0; Bacteria - 568; Metazoa - 120; Fungi - 66; Plants - 20; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT2G21070.2p  transcript_id AT2G21070.2  protein_id AT2G21070.2p  transcript_id AT2G21070.2  
At2g21070	chr2:009040940	0.0	W/9040940-9041166,9041248-9041453,9041555-9041978,9042070-9042277,9042392-9042499,9042593-9042739,9042824-9042893,9043075-9043136	AT2G21070.1  CDS  gene_syn F26H11.17, F26H11_17, FIO1, FIONA1  gene FIO1  function This gene is predicted to an encode a nuclear-localized protein that is involved in regulating the period of circadian rhythms without affecting their amplitude or robustness. FIONA1 seems to act as a central oscillator-associated component, but its transcript levels are not regulated in a circadian or light-dependent manner. FIONA1 also appears to be involved in photoperiod-dependent flowering.  go_function methyltransferase activity|GO:0008168||IEA  go_component nucleus|GO:0005634|18281507|IDA  go_process circadian rhythm|GO:0007623|18281507|IMP  go_process photoperiodism|GO:0009648|18281507|IMP  go_process photoperiodism, flowering|GO:0048573|18281507|IMP  product FIO1 (FIONA1); methyltransferase  note FIONA1 (FIO1); FUNCTIONS IN: methyltransferase activity; INVOLVED IN: photoperiodism, flowering, circadian rhythm, photoperiodism; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosyl-L-methionine dependent methyltransferase, Mett10D, predicted (InterPro:IPR017182), S-adenosyl-L-methionine dependent methyltransferase, predicted (InterPro:IPR010286); Has 853 Blast hits to 847 proteins in 382 species: Archae - 0; Bacteria - 568; Metazoa - 120; Fungi - 66; Plants - 21; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT2G21070.1p  transcript_id AT2G21070.1  protein_id AT2G21070.1p  transcript_id AT2G21070.1  
At2g21080	chr2:009043707	0.0	W/9043707-9044582,9044670-9044901,9044977-9045113	AT2G21080.1  CDS  gene_syn F26H11.16, F26H11_16  go_component vacuole|GO:0005773|14760709|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20300.1); Has 79 Blast hits to 79 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G21080.1p  transcript_id AT2G21080.1  protein_id AT2G21080.1p  transcript_id AT2G21080.1  
At2g21090	chr2:009045695	0.0	C/9045695-9047488	AT2G21090.1  CDS  gene_syn F26H11.15, F26H11_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 15251 Blast hits to 5165 proteins in 162 species: Archae - 0; Bacteria - 8; Metazoa - 93; Fungi - 81; Plants - 14731; Viruses - 0; Other Eukaryotes - 338 (source: NCBI BLink).  protein_id AT2G21090.1p  transcript_id AT2G21090.1  protein_id AT2G21090.1p  transcript_id AT2G21090.1  
At2g21100	chr2:009049015	0.0	C/9049015-9049336,9048687-9048928	AT2G21100.1  CDS  gene_syn F26H11.14, F26H11_14  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_process lignan biosynthetic process|GO:0009807||ISS  go_function molecular_function|GO:0003674||ND  product disease resistance-responsive protein-related / dirigent protein-related  note disease resistance-responsive protein-related / dirigent protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lignan biosynthetic process, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: disease resistance-responsive family protein (TAIR:AT1G65870.1); Has 489 Blast hits to 488 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 489; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G21100.1p  transcript_id AT2G21100.1  protein_id AT2G21100.1p  transcript_id AT2G21100.1  
At2g21110	chr2:009050290	0.0	C/9050290-9050850	AT2G21110.1  CDS  gene_syn F26H11.13, F26H11_13  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_function molecular_function|GO:0003674||ND  product disease resistance-responsive family protein  note disease resistance-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: disease resistance-responsive family protein (TAIR:AT4G38700.1); Has 493 Blast hits to 492 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 493; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G21110.1p  transcript_id AT2G21110.1  protein_id AT2G21110.1p  transcript_id AT2G21110.1  
At2g21120	chr2:009054146	0.0	C/9054146-9054266,9053797-9053853,9053619-9053709,9053375-9053535,9053141-9053268,9052909-9053046,9052490-9052582,9052283-9052403,9052103-9052179	AT2G21120.1  CDS  gene_syn F26H11.12, F26H11_12  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF803 (InterPro:IPR008521); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38730.1); Has 908 Blast hits to 896 proteins in 166 species: Archae - 0; Bacteria - 89; Metazoa - 363; Fungi - 233; Plants - 151; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT2G21120.1p  transcript_id AT2G21120.1  protein_id AT2G21120.1p  transcript_id AT2G21120.1  
At2g21130	chr2:009055619	0.0	C/9055619-9056143	AT2G21130.1  CDS  gene_syn F26H11.11, F26H11_11  go_component plasma membrane|GO:0005886|17644812|IDA  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||IEA  go_process protein folding|GO:0006457||ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP2) / rotamase  note peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP2) / rotamase; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: ROC1 (ROTAMASE CYP 1); peptidyl-prolyl cis-trans isomerase (TAIR:AT4G38740.1); Has 11585 Blast hits to 11564 proteins in 1521 species: Archae - 82; Bacteria - 3695; Metazoa - 2395; Fungi - 955; Plants - 731; Viruses - 4; Other Eukaryotes - 3723 (source: NCBI BLink).  protein_id AT2G21130.1p  transcript_id AT2G21130.1  protein_id AT2G21130.1p  transcript_id AT2G21130.1  
At2g21140	chr2:009061870	0.0	C/9061870-9062035,9060868-9061667	AT2G21140.1  CDS  gene_syn ATPRP2, F26H11.10, F26H11_10, PROLINE-RICH PROTEIN 2  gene ATPRP2  function Proline-rich protein expressed in expanding leaves, stems, flowers, and siliques.  go_component cell wall|GO:0005618|10594096|ISS  go_process plant-type cell wall organization|GO:0009664|10594096|ISS  product ATPRP2 (PROLINE-RICH PROTEIN 2)  note PROLINE-RICH PROTEIN 2 (ATPRP2); INVOLVED IN: plant-type cell wall organization; LOCATED IN: cell wall; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1210 (InterPro:IPR010616); BEST Arabidopsis thaliana protein match is: PRP4 (PROLINE-RICH PROTEIN 4) (TAIR:AT4G38770.1); Has 14457 Blast hits to 6225 proteins in 585 species: Archae - 40; Bacteria - 1358; Metazoa - 5451; Fungi - 830; Plants - 4529; Viruses - 649; Other Eukaryotes - 1600 (source: NCBI BLink).  protein_id AT2G21140.1p  transcript_id AT2G21140.1  protein_id AT2G21140.1p  transcript_id AT2G21140.1  
At2g21150	chr2:009065397	0.0	W/9065397-9065567,9065833-9065898,9065984-9066048,9066136-9066251,9066712-9066790,9066886-9066962,9067046-9067107,9067196-9067327,9067414-9067467,9067554-9067619,9067713-9067787,9067871-9067921	AT2G21150.1  CDS  gene_syn F26H11.9, F26H11_9, XAP5 CIRCADIAN TIMEKEEPER, XCT  gene XCT  function XAP5 family protein involved in light regulation of the circadian clock and photomorphogenesis. Nuclear localized.  go_component nucleus|GO:0005634|18515502|IDA  go_process response to blue light|GO:0009637|18515502|IMP  go_process regulation of photomorphogenesis|GO:0010099|18515502|IMP  go_process response to red light|GO:0010114|18515502|IMP  go_process regulation of circadian rhythm|GO:0042752|18515502|IMP  go_function molecular_function|GO:0003674||ND  product XCT (XAP5 CIRCADIAN TIMEKEEPER)  note XAP5 CIRCADIAN TIMEKEEPER (XCT); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of circadian rhythm, response to blue light, response to red light, regulation of photomorphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; CONTAINS InterPro DOMAIN/s: XAP5 protein (InterPro:IPR007005); Has 1700 Blast hits to 1413 proteins in 188 species: Archae - 2; Bacteria - 34; Metazoa - 694; Fungi - 159; Plants - 41; Viruses - 24; Other Eukaryotes - 746 (source: NCBI BLink).  protein_id AT2G21150.1p  transcript_id AT2G21150.1  protein_id AT2G21150.1p  transcript_id AT2G21150.1  
At2g21160	chr2:009068428	0.0	W/9068428-9068488,9068944-9069111,9069202-9069252,9069349-9069437,9069526-9069603,9069711-9069813,9070294-9070310	AT2G21160.2  CDS  gene_syn F26H11.8, F26H11_8  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process biological_process|GO:0008150||ND  product translocon-associated protein alpha (TRAP alpha) family protein  note translocon-associated protein alpha (TRAP alpha) family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, endoplasmic reticulum, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16595.1); Has 185 Blast hits to 185 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 10; Plants - 38; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT2G21160.2p  transcript_id AT2G21160.2  protein_id AT2G21160.2p  transcript_id AT2G21160.2  
At2g21160	chr2:009068428	0.0	W/9068428-9068488,9068944-9069111,9069202-9069252,9069349-9069437,9069526-9069603,9069711-9069914,9069992-9070063,9070154-9070207	AT2G21160.1  CDS  gene_syn F26H11.8, F26H11_8  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  product translocon-associated protein alpha (TRAP alpha) family protein  note translocon-associated protein alpha (TRAP alpha) family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translocon-associated protein (TRAP), alpha subunit (InterPro:IPR005595); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16595.1); Has 195 Blast hits to 195 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 18; Plants - 38; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT2G21160.1p  transcript_id AT2G21160.1  protein_id AT2G21160.1p  transcript_id AT2G21160.1  
At2g21170	chr2:009072912	0.0	C/9072912-9073106,9072315-9072384,9072070-9072193,9071826-9071910,9071603-9071735,9071339-9071512,9071189-9071271,9071047-9071103	AT2G21170.2  CDS  gene_syn F26H11.7, F26H11_7, TIM, TRIOSEPHOSPHATE ISOMERASE  gene TIM  function Encodes triosephosphate isomerase.  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function triose-phosphate isomerase activity|GO:0004807||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component chloroplast|GO:0009507||ISS  go_process reductive pentose-phosphate cycle|GO:0019253||ISS  go_function triose-phosphate isomerase activity|GO:0004807||ISS  product TIM (TRIOSEPHOSPHATE ISOMERASE); catalytic/ triose-phosphate isomerase  note TRIOSEPHOSPHATE ISOMERASE (TIM); FUNCTIONS IN: triose-phosphate isomerase activity, catalytic activity; INVOLVED IN: reductive pentose-phosphate cycle, metabolic process; LOCATED IN: thylakoid, mitochondrion, apoplast, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Triosephosphate isomerase (InterPro:IPR000652); BEST Arabidopsis thaliana protein match is: TPI (TRIOSEPHOSPHATE ISOMERASE); triose-phosphate isomerase (TAIR:AT3G55440.1); Has 7914 Blast hits to 7912 proteins in 2179 species: Archae - 107; Bacteria - 3420; Metazoa - 905; Fungi - 169; Plants - 405; Viruses - 0; Other Eukaryotes - 2908 (source: NCBI BLink).  protein_id AT2G21170.2p  transcript_id AT2G21170.2  protein_id AT2G21170.2p  transcript_id AT2G21170.2  
At2g21170	chr2:009072912	0.0	C/9072912-9073106,9072476-9072502,9072315-9072384,9072070-9072193,9071826-9071910,9071603-9071735,9071339-9071512,9071189-9071271,9071047-9071103	AT2G21170.1  CDS  gene_syn F26H11.7, F26H11_7, TIM, TRIOSEPHOSPHATE ISOMERASE  gene TIM  function Encodes triosephosphate isomerase.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function triose-phosphate isomerase activity|GO:0004807||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component chloroplast|GO:0009507||ISS  go_process reductive pentose-phosphate cycle|GO:0019253||ISS  go_function triose-phosphate isomerase activity|GO:0004807||ISS  product TIM (TRIOSEPHOSPHATE ISOMERASE); catalytic/ triose-phosphate isomerase  note TRIOSEPHOSPHATE ISOMERASE (TIM); FUNCTIONS IN: triose-phosphate isomerase activity, catalytic activity; INVOLVED IN: reductive pentose-phosphate cycle, metabolic process; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Triosephosphate isomerase (InterPro:IPR000652); BEST Arabidopsis thaliana protein match is: TPI (TRIOSEPHOSPHATE ISOMERASE); triose-phosphate isomerase (TAIR:AT3G55440.1); Has 7956 Blast hits to 7954 proteins in 2178 species: Archae - 103; Bacteria - 3422; Metazoa - 907; Fungi - 169; Plants - 405; Viruses - 0; Other Eukaryotes - 2950 (source: NCBI BLink).  protein_id AT2G21170.1p  transcript_id AT2G21170.1  protein_id AT2G21170.1p  transcript_id AT2G21170.1  
At2g21172	chr2:009073535	0.0	C/9073535-9073752	AT2G21172.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G16486  
At2g21180	chr2:009074956	0.0	C/9074956-9075351	AT2G21180.1  CDS  gene_syn F26H11.6, F26H11_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 58 Blast hits to 58 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G21180.1p  transcript_id AT2G21180.1  protein_id AT2G21180.1p  transcript_id AT2G21180.1  
At2g21187	chr2:009076533	0.0	W/9076533-9077048	AT2G21187.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G21185  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G21187.1  
At2g21187	chr2:009076590	0.0	W/9076590-9077217	AT2G21187.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G21185  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G21187.2  
At2g21185	chr2:009076602	0.0	C/9076602-9076883	AT2G21185.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G21185.1p  transcript_id AT2G21185.1  protein_id AT2G21185.1p  transcript_id AT2G21185.1  
At2g21188	chr2:009079042	0.0	C/9079042-9079538	AT2G21188.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G21188.1  
At2g21190	chr2:009080916	0.0	W/9080916-9081129,9081338-9081537,9081857-9081997,9082081-9082161,9082393-9082517,9082594-9082642	AT2G21190.1  CDS  gene_syn F26H11.5, F26H11_5  go_component integral to membrane|GO:0016021||IEA  go_process protein retention in ER lumen|GO:0006621||IEA  go_function ER retention sequence binding|GO:0046923||IEA  go_component integral to membrane|GO:0016021||ISS  go_process protein transport|GO:0015031||ISS  go_function receptor activity|GO:0004872||ISS  product ER lumen protein retaining receptor family protein  note ER lumen protein retaining receptor family protein; FUNCTIONS IN: ER retention sequence binding, receptor activity; INVOLVED IN: protein retention in ER lumen, protein transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: ER lumen protein retaining receptor (InterPro:IPR000133); BEST Arabidopsis thaliana protein match is: ER lumen protein retaining receptor family protein (TAIR:AT4G38790.1); Has 626 Blast hits to 626 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 264; Fungi - 114; Plants - 120; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).  protein_id AT2G21190.1p  transcript_id AT2G21190.1  protein_id AT2G21190.1p  transcript_id AT2G21190.1  
At2g21195	chr2:009083191	0.0	W/9083191-9083261,9083339-9083392,9083462-9083513,9083583-9083687	AT2G21195.1  CDS  go_component cellular_component|GO:0005575||ND  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 17 Blast hits to 17 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G21195.1p  transcript_id AT2G21195.1  protein_id AT2G21195.1p  transcript_id AT2G21195.1  
At2g21195	chr2:009083316	0.0	W/9083316-9083392,9083462-9083513,9083583-9083687	AT2G21195.3  CDS  go_component cellular_component|GO:0005575||ND  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 15 Blast hits to 15 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G21195.3p  transcript_id AT2G21195.3  protein_id AT2G21195.3p  transcript_id AT2G21195.3  
At2g21195	chr2:009083316	0.0	W/9083316-9083392,9083462-9083687	AT2G21195.2  CDS  go_component cellular_component|GO:0005575||ND  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 15 Blast hits to 15 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G21195.2p  transcript_id AT2G21195.2  protein_id AT2G21195.2p  transcript_id AT2G21195.2  
At2g21200	chr2:009084039	0.0	C/9084039-9084299	AT2G21200.1  CDS  gene_syn F26H11.4, F26H11_4  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive protein, putative  note auxin-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT5G18060.1); Has 584 Blast hits to 581 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 583; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G21200.1p  transcript_id AT2G21200.1  protein_id AT2G21200.1p  transcript_id AT2G21200.1  
At2g21210	chr2:009085513	0.0	C/9085513-9085809	AT2G21210.1  CDS  gene_syn F26H11.3, F26H11_3  function Putative auxin-regulated protein whose expression is downregulated in response to chitin oligomers.  go_process response to auxin stimulus|GO:0009733||ISS  go_process response to chitin|GO:0010200|15923325|IEP  go_function molecular_function|GO:0003674||ND  product auxin-responsive protein, putative  note auxin-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus, response to chitin; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT4G38840.1); Has 700 Blast hits to 689 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 699; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G21210.1p  transcript_id AT2G21210.1  protein_id AT2G21210.1p  transcript_id AT2G21210.1  
At2g21220	chr2:009089380	0.0	W/9089380-9089694	AT2G21220.1  CDS  gene_syn F7O24.6, F7O24_6  go_process response to auxin stimulus|GO:0009733||ISS  go_function calmodulin binding|GO:0005516||ISS  product auxin-responsive protein, putative  note auxin-responsive protein, putative; FUNCTIONS IN: calmodulin binding; INVOLVED IN: response to auxin stimulus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT4G38860.1); Has 710 Blast hits to 699 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 709; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G21220.1p  transcript_id AT2G21220.1  protein_id AT2G21220.1p  transcript_id AT2G21220.1  
At2g21230	chr2:009094933	0.0	C/9094933-9096059,9094717-9094849,9094521-9094643	AT2G21230.2  CDS  gene_syn F7O24.5, F7O24_5  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  product bZIP family transcription factor  note bZIP family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP protein (TAIR:AT4G38900.3); Has 2120 Blast hits to 1260 proteins in 192 species: Archae - 2; Bacteria - 147; Metazoa - 338; Fungi - 165; Plants - 663; Viruses - 3; Other Eukaryotes - 802 (source: NCBI BLink).  protein_id AT2G21230.2p  transcript_id AT2G21230.2  protein_id AT2G21230.2p  transcript_id AT2G21230.2  
At2g21230	chr2:009094933	0.0	C/9094933-9096059,9094717-9094849,9094541-9094643,9093920-9094134	AT2G21230.3  CDS  gene_syn F7O24.5, F7O24_5  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  product bZIP family transcription factor  note bZIP family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP protein (TAIR:AT4G38900.3); Has 588 Blast hits to 227 proteins in 66 species: Archae - 0; Bacteria - 19; Metazoa - 111; Fungi - 28; Plants - 59; Viruses - 0; Other Eukaryotes - 371 (source: NCBI BLink).  protein_id AT2G21230.3p  transcript_id AT2G21230.3  protein_id AT2G21230.3p  transcript_id AT2G21230.3  
At2g21230	chr2:009094933	0.0	C/9094933-9096059,9094717-9094849,9094559-9094643,9093920-9094134	AT2G21230.1  CDS  gene_syn F7O24.5, F7O24_5  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  product bZIP family transcription factor  note bZIP family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP protein (TAIR:AT4G38900.3); Has 2560 Blast hits to 1633 proteins in 242 species: Archae - 8; Bacteria - 270; Metazoa - 564; Fungi - 183; Plants - 679; Viruses - 3; Other Eukaryotes - 853 (source: NCBI BLink).  protein_id AT2G21230.1p  transcript_id AT2G21230.1  protein_id AT2G21230.1p  transcript_id AT2G21230.1  
At2g21235	chr2:009097674	0.0	C/9097674-9098767,9097422-9097554,9097239-9097323,9096592-9096932	AT2G21235.1  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11906833|ISS  product bZIP protein-related  note bZIP protein-related; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT2G12900.1); Has 9617 Blast hits to 4621 proteins in 371 species: Archae - 8; Bacteria - 338; Metazoa - 2818; Fungi - 1770; Plants - 1032; Viruses - 122; Other Eukaryotes - 3529 (source: NCBI BLink).  protein_id AT2G21235.1p  transcript_id AT2G21235.1  protein_id AT2G21235.1p  transcript_id AT2G21235.1  
At2g21237	chr2:009100684	0.0	C/9100684-9101184	AT2G21237.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G21237.1p  transcript_id AT2G21237.1  protein_id AT2G21237.1p  transcript_id AT2G21237.1  
At2g21240	chr2:009102421	0.0	C/9102421-9102489,9101515-9102336	AT2G21240.1  CDS  gene_syn ATBPC4, BASIC PENTACYSTEINE 4, BBR, BPC4, F7O24.4, F7O24_4  gene BPC4  go_component nucleus|GO:0005634|14731261|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|14731261|IPI  go_function DNA binding|GO:0003677|14731261|IPI  go_function transcription factor activity|GO:0003700|14731261|IPI  product BPC4 (BASIC PENTACYSTEINE 4); DNA binding / transcription factor  note BASIC PENTACYSTEINE 4 (BPC4); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: BPC5 (BASIC PENTACYSTEINE 5); DNA binding / transcription factor (TAIR:AT4G38910.1); Has 180 Blast hits to 153 proteins in 24 species: Archae - 0; Bacteria - 2; Metazoa - 54; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G21240.1p  transcript_id AT2G21240.1  protein_id AT2G21240.1p  transcript_id AT2G21240.1  
At2g21240	chr2:009102421	0.0	C/9102421-9102489,9101515-9102336	AT2G21240.2  CDS  gene_syn ATBPC4, BASIC PENTACYSTEINE 4, BBR, BPC4, F7O24.4, F7O24_4  gene BPC4  go_component nucleus|GO:0005634|14731261|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|14731261|IPI  go_function DNA binding|GO:0003677|14731261|IPI  go_function transcription factor activity|GO:0003700|14731261|IPI  product BPC4 (BASIC PENTACYSTEINE 4); DNA binding / transcription factor  note BASIC PENTACYSTEINE 4 (BPC4); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: BPC5 (BASIC PENTACYSTEINE 5); DNA binding / transcription factor (TAIR:AT4G38910.1); Has 180 Blast hits to 153 proteins in 24 species: Archae - 0; Bacteria - 2; Metazoa - 54; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G21240.2p  transcript_id AT2G21240.2  protein_id AT2G21240.2p  transcript_id AT2G21240.2  
At2g21250	chr2:009104984	0.0	C/9104984-9105116,9104487-9104581,9104288-9104405,9104023-9104155,9103703-9103940	AT2G21250.2  CDS  gene_syn F3K23.1, F3K23_1  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function oxidoreductase activity|GO:0016491||IEA  product mannose 6-phosphate reductase (NADPH-dependent), putative  note mannose 6-phosphate reductase (NADPH-dependent), putative; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: response to cadmium ion; EXPRESSED IN: cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Aldo/keto reductase, conserved site (InterPro:IPR018170); BEST Arabidopsis thaliana protein match is: mannose 6-phosphate reductase (NADPH-dependent), putative (TAIR:AT2G21260.1); Has 11233 Blast hits to 11214 proteins in 1269 species: Archae - 143; Bacteria - 6090; Metazoa - 1726; Fungi - 1039; Plants - 855; Viruses - 0; Other Eukaryotes - 1380 (source: NCBI BLink).  protein_id AT2G21250.2p  transcript_id AT2G21250.2  protein_id AT2G21250.2p  transcript_id AT2G21250.2  
At2g21250	chr2:009104984	0.0	C/9104984-9105116,9104487-9104581,9104288-9104405,9104023-9104155,9103721-9103940,9103408-9103638	AT2G21250.1  CDS  gene_syn F3K23.1, F3K23_1  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function oxidoreductase activity|GO:0016491||IEA  product mannose 6-phosphate reductase (NADPH-dependent), putative  note mannose 6-phosphate reductase (NADPH-dependent), putative; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: response to cadmium ion; EXPRESSED IN: cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Aldo/keto reductase, conserved site (InterPro:IPR018170); BEST Arabidopsis thaliana protein match is: mannose 6-phosphate reductase (NADPH-dependent), putative (TAIR:AT2G21260.1); Has 13388 Blast hits to 13358 proteins in 1330 species: Archae - 187; Bacteria - 7678; Metazoa - 1798; Fungi - 1191; Plants - 907; Viruses - 0; Other Eukaryotes - 1627 (source: NCBI BLink).  protein_id AT2G21250.1p  transcript_id AT2G21250.1  protein_id AT2G21250.1p  transcript_id AT2G21250.1  
At2g21260	chr2:009107176	0.0	C/9107176-9107308,9106791-9106885,9106589-9106706,9106306-9106438,9106004-9106223,9105693-9105923	AT2G21260.1  CDS  gene_syn F3K23.2, F3K23_2  go_process oxidation reduction|GO:0055114||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product mannose 6-phosphate reductase (NADPH-dependent), putative  note mannose 6-phosphate reductase (NADPH-dependent), putative; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: oxidation reduction; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Aldo/keto reductase, conserved site (InterPro:IPR018170); BEST Arabidopsis thaliana protein match is: mannose 6-phosphate reductase (NADPH-dependent), putative (TAIR:AT2G21250.1); Has 13444 Blast hits to 13412 proteins in 1337 species: Archae - 189; Bacteria - 7697; Metazoa - 1808; Fungi - 1215; Plants - 915; Viruses - 0; Other Eukaryotes - 1620 (source: NCBI BLink).  protein_id AT2G21260.1p  transcript_id AT2G21260.1  protein_id AT2G21260.1p  transcript_id AT2G21260.1  
At2g21270	chr2:009107841	0.0	W/9107841-9107856,9108079-9108128,9108238-9108315,9108482-9108506,9108592-9108624,9108716-9108837,9108931-9109061,9109251-9109471,9109566-9109813,9109914-9110012	AT2G21270.3  CDS  gene_syn F3K23.3, F3K23_3  go_component endomembrane system|GO:0012505||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_function molecular_function|GO:0003674||ND  product ubiquitin fusion degradation UFD1 family protein  note ubiquitin fusion degradation UFD1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin fusion degradation protein UFD1 (InterPro:IPR004854); BEST Arabidopsis thaliana protein match is: ubiquitin fusion degradation UFD1 family protein (TAIR:AT4G38930.2); Has 506 Blast hits to 506 proteins in 158 species: Archae - 8; Bacteria - 2; Metazoa - 131; Fungi - 142; Plants - 71; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).  protein_id AT2G21270.3p  transcript_id AT2G21270.3  protein_id AT2G21270.3p  transcript_id AT2G21270.3  
At2g21270	chr2:009108126	0.0	W/9108126-9108128,9108238-9108315,9108482-9108506,9108592-9108624,9108716-9108837,9108931-9109061,9109251-9109471,9109566-9109813,9109914-9110012	AT2G21270.1  CDS  gene_syn F3K23.3, F3K23_3  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_function molecular_function|GO:0003674||ND  product ubiquitin fusion degradation UFD1 family protein  note ubiquitin fusion degradation UFD1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin fusion degradation protein UFD1 (InterPro:IPR004854); BEST Arabidopsis thaliana protein match is: ubiquitin fusion degradation UFD1 family protein (TAIR:AT4G38930.2); Has 506 Blast hits to 506 proteins in 158 species: Archae - 8; Bacteria - 2; Metazoa - 131; Fungi - 142; Plants - 71; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).  protein_id AT2G21270.1p  transcript_id AT2G21270.1  protein_id AT2G21270.1p  transcript_id AT2G21270.1  
At2g21270	chr2:009108126	0.0	W/9108126-9108128,9108238-9108315,9108482-9108506,9108592-9108624,9108716-9108837,9108931-9109061,9109251-9109471,9109566-9109813,9109914-9110012	AT2G21270.2  CDS  gene_syn F3K23.3, F3K23_3  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_function molecular_function|GO:0003674||ND  product ubiquitin fusion degradation UFD1 family protein  note ubiquitin fusion degradation UFD1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin fusion degradation protein UFD1 (InterPro:IPR004854); BEST Arabidopsis thaliana protein match is: ubiquitin fusion degradation UFD1 family protein (TAIR:AT4G38930.2); Has 506 Blast hits to 506 proteins in 158 species: Archae - 8; Bacteria - 2; Metazoa - 131; Fungi - 142; Plants - 71; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).  protein_id AT2G21270.2p  transcript_id AT2G21270.2  protein_id AT2G21270.2p  transcript_id AT2G21270.2  
At2g21280	chr2:009112599	0.0	C/9112599-9112679,9112454-9112498,9112233-9112308,9112093-9112152,9111863-9111981,9111742-9111786,9111562-9111640,9111405-9111466,9111147-9111249,9110990-9111050,9110830-9110900,9110502-9110743	AT2G21280.1  CDS  gene_syn ATSULA, GC1, GIANT CHLOROPLAST 1, SULA  gene SULA  function A nuclear-encoded, plastid-targeted protein (AtSulA) whose overexpression causes severe yet stochastic plastid (shown in chloroplasts and leucoplasts) division defects. The protein does not appear to interact with either AtFtsZ proteins when studied in a yeast two-hybrid system.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  go_component plastid|GO:0009536|15208387|IDA  go_process chloroplast fission|GO:0010020|15208387|IMP  product SULA; binding / catalytic/ coenzyme binding  note SULA; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: chloroplast fission; LOCATED IN: chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar nucleotide epimerase YfcH, putative (InterPro:IPR010099), NAD-dependent epimerase/dehydratase (InterPro:IPR001509), Domain of unknown function DUF1731, C-terminal (InterPro:IPR013549), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: terpene cyclase/mutase-related (TAIR:AT4G33360.2); Has 3337 Blast hits to 3336 proteins in 853 species: Archae - 18; Bacteria - 1945; Metazoa - 91; Fungi - 16; Plants - 127; Viruses - 0; Other Eukaryotes - 1140 (source: NCBI BLink).  protein_id AT2G21280.1p  transcript_id AT2G21280.1  protein_id AT2G21280.1p  transcript_id AT2G21280.1  
At2g21290	chr2:009112888	0.0	W/9112888-9113184	AT2G21290.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 41 Blast hits to 41 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G21290.1p  transcript_id AT2G21290.1  protein_id AT2G21290.1p  transcript_id AT2G21290.1  
At2g21300	chr2:009118073	0.0	C/9118073-9118292,9117781-9117870,9117600-9117700,9117402-9117515,9117226-9117307,9117001-9117068,9116843-9116908,9116627-9116751,9116147-9116483,9115939-9116037,9115194-9115844,9114801-9115111,9114396-9114720	AT2G21300.1  CDS  gene_syn F3K23.6, F3K23_6  go_component plasma membrane|GO:0005886|17317660|IDA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product kinesin motor family protein  note kinesin motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin motor family protein (TAIR:AT4G38950.2); Has 7485 Blast hits to 7163 proteins in 235 species: Archae - 0; Bacteria - 2; Metazoa - 3790; Fungi - 875; Plants - 908; Viruses - 0; Other Eukaryotes - 1910 (source: NCBI BLink).  protein_id AT2G21300.1p  transcript_id AT2G21300.1  protein_id AT2G21300.1p  transcript_id AT2G21300.1  
At2g21300	chr2:009118073	0.0	C/9118073-9118292,9117781-9117870,9117600-9117700,9117402-9117515,9117226-9117307,9117001-9117068,9116843-9116908,9116627-9116751,9116147-9116483,9115939-9116037,9115194-9115844,9114801-9115111,9114396-9114720	AT2G21300.2  CDS  gene_syn F3K23.6, F3K23_6  go_component plasma membrane|GO:0005886|17317660|IDA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product kinesin motor family protein  note kinesin motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin motor family protein (TAIR:AT4G38950.2); Has 7485 Blast hits to 7163 proteins in 235 species: Archae - 0; Bacteria - 2; Metazoa - 3790; Fungi - 875; Plants - 908; Viruses - 0; Other Eukaryotes - 1910 (source: NCBI BLink).  protein_id AT2G21300.2p  transcript_id AT2G21300.2  protein_id AT2G21300.2p  transcript_id AT2G21300.2  
At2g21310	chr2:009122622	0.0	W/9122622-9125212	AT2G21310.1  mRNA_TE_gene  pseudo  gene_syn F3K23.7, F3K23_7  note Transposable element gene, copia-like retrotransposon family, has a 1.8e-151 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At2g21320	chr2:009126502	0.0	W/9126502-9126594,9126977-9127073,9127165-9127280,9127364-9127528,9127605-9127652	AT2G21320.1  CDS  gene_syn F3K23.8, F3K23_8  go_component intracellular|GO:0005622||IEA  go_component endomembrane system|GO:0012505||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (B-box type) family protein  note zinc finger (B-box type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: zinc finger (B-box type) family protein (TAIR:AT4G38960.1); Has 1363 Blast hits to 914 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 24; Fungi - 0; Plants - 1258; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).  protein_id AT2G21320.1p  transcript_id AT2G21320.1  protein_id AT2G21320.1p  transcript_id AT2G21320.1  
At2g21330	chr2:009129973	0.0	C/9129973-9130152,9129620-9129889,9129316-9129425,9129133-9129223,9128762-9129046	AT2G21330.2  CDS  gene_syn F3K23.9, F3K23_9  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function catalytic activity|GO:0003824||IEA  go_function fructose-bisphosphate aldolase activity|GO:0004332||IEA  go_component chloroplast stroma|GO:0009570|16414959|IDA  go_component plastoglobule|GO:0010287|16461379|IDA  go_process pentose-phosphate shunt|GO:0006098||TAS  product fructose-bisphosphate aldolase, putative  note fructose-bisphosphate aldolase, putative; FUNCTIONS IN: fructose-bisphosphate aldolase activity, catalytic activity; INVOLVED IN: response to cadmium ion, pentose-phosphate shunt; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741); BEST Arabidopsis thaliana protein match is: fructose-bisphosphate aldolase, putative (TAIR:AT4G38970.2); Has 3899 Blast hits to 3899 proteins in 669 species: Archae - 0; Bacteria - 435; Metazoa - 992; Fungi - 2; Plants - 331; Viruses - 0; Other Eukaryotes - 2139 (source: NCBI BLink).  protein_id AT2G21330.2p  transcript_id AT2G21330.2  protein_id AT2G21330.2p  transcript_id AT2G21330.2  
At2g21330	chr2:009129973	0.0	C/9129973-9130152,9129620-9129889,9129316-9129425,9129133-9129223,9128777-9129046,9128416-9128694	AT2G21330.1  CDS  gene_syn F3K23.9, F3K23_9  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function catalytic activity|GO:0003824||IEA  go_function fructose-bisphosphate aldolase activity|GO:0004332||IEA  go_component chloroplast stroma|GO:0009570|16414959|IDA  go_component plastoglobule|GO:0010287|16461379|IDA  go_process pentose-phosphate shunt|GO:0006098||TAS  product fructose-bisphosphate aldolase, putative  note fructose-bisphosphate aldolase, putative; FUNCTIONS IN: fructose-bisphosphate aldolase activity, catalytic activity; INVOLVED IN: response to cadmium ion, pentose-phosphate shunt; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741); BEST Arabidopsis thaliana protein match is: fructose-bisphosphate aldolase, putative (TAIR:AT4G38970.1); Has 4194 Blast hits to 4191 proteins in 673 species: Archae - 0; Bacteria - 436; Metazoa - 1009; Fungi - 2; Plants - 339; Viruses - 0; Other Eukaryotes - 2408 (source: NCBI BLink).  protein_id AT2G21330.1p  transcript_id AT2G21330.1  protein_id AT2G21330.1p  transcript_id AT2G21330.1  
At2g21330	chr2:009129973	0.0	C/9129973-9130152,9129620-9129889,9129316-9129425,9129133-9129223,9128777-9129046,9128617-9128694,9128416-9128586	AT2G21330.3  CDS  gene_syn F3K23.9, F3K23_9  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function catalytic activity|GO:0003824||IEA  go_function fructose-bisphosphate aldolase activity|GO:0004332||IEA  go_component chloroplast stroma|GO:0009570|16414959|IDA  go_component plastoglobule|GO:0010287|16461379|IDA  go_process pentose-phosphate shunt|GO:0006098||TAS  product fructose-bisphosphate aldolase, putative  note fructose-bisphosphate aldolase, putative; FUNCTIONS IN: fructose-bisphosphate aldolase activity, catalytic activity; INVOLVED IN: response to cadmium ion, pentose-phosphate shunt; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741); BEST Arabidopsis thaliana protein match is: fructose-bisphosphate aldolase, putative (TAIR:AT4G38970.1); Has 4152 Blast hits to 4149 proteins in 673 species: Archae - 0; Bacteria - 435; Metazoa - 1009; Fungi - 2; Plants - 339; Viruses - 0; Other Eukaryotes - 2367 (source: NCBI BLink).  protein_id AT2G21330.3p  transcript_id AT2G21330.3  protein_id AT2G21330.3p  transcript_id AT2G21330.3  
At2g21340	chr2:009132629	0.0	W/9132629-9133094,9133723-9133817,9133948-9134056,9134140-9134195,9134373-9134428,9134590-9134728,9134845-9134982,9135061-9135129,9135215-9135325,9135428-9135556,9135649-9135726,9135815-9135886,9135987-9136049,9136138-9136236	AT2G21340.1  CDS  gene_syn F3K23.10, F3K23_10  go_component chloroplast|GO:0009507|18431481|IDA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  product antiporter/ drug transporter  note antiporter/ drug transporter; FUNCTIONS IN: drug transporter activity, antiporter activity; INVOLVED IN: multidrug transport; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: EDS5 (ENHANCED DISEASE SUSCEPTIBILITY 5); antiporter/ multidrug efflux pump/ transporter (TAIR:AT4G39030.1); Has 4153 Blast hits to 4145 proteins in 897 species: Archae - 89; Bacteria - 3108; Metazoa - 25; Fungi - 26; Plants - 225; Viruses - 0; Other Eukaryotes - 680 (source: NCBI BLink).  protein_id AT2G21340.1p  transcript_id AT2G21340.1  protein_id AT2G21340.1p  transcript_id AT2G21340.1  
At2g21340	chr2:009132629	0.0	W/9132629-9133094,9133723-9133817,9133948-9134056,9134149-9134195,9134373-9134428,9134590-9134728,9134845-9134982,9135061-9135129,9135215-9135325,9135428-9135556,9135649-9135726,9135815-9135886,9135987-9136049,9136138-9136236	AT2G21340.2  CDS  gene_syn F3K23.10, F3K23_10  go_component chloroplast|GO:0009507|18431481|IDA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  product antiporter/ drug transporter  note antiporter/ drug transporter; FUNCTIONS IN: drug transporter activity, antiporter activity; INVOLVED IN: multidrug transport; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: EDS5 (ENHANCED DISEASE SUSCEPTIBILITY 5); antiporter/ multidrug efflux pump/ transporter (TAIR:AT4G39030.1); Has 4125 Blast hits to 4121 proteins in 899 species: Archae - 93; Bacteria - 3082; Metazoa - 30; Fungi - 24; Plants - 224; Viruses - 0; Other Eukaryotes - 672 (source: NCBI BLink).  protein_id AT2G21340.2p  transcript_id AT2G21340.2  protein_id AT2G21340.2p  transcript_id AT2G21340.2  
At2g21350	chr2:009136767	0.0	C/9136767-9137267,9136451-9136618	AT2G21350.1  CDS  gene_syn F3K23.11, F3K23_11  go_component chloroplast|GO:0009507||IEA  go_function RNA binding|GO:0003723||IEA  go_process biological_process|GO:0008150||ND  product RNA binding  note RNA binding; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA binding (TAIR:AT4G39040.2); Has 902 Blast hits to 902 proteins in 449 species: Archae - 0; Bacteria - 831; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT2G21350.1p  transcript_id AT2G21350.1  protein_id AT2G21350.1p  transcript_id AT2G21350.1  
At2g21360	chr2:009137356	0.0	W/9137356-9137427	AT2G21360.1  tRNA  gene_syn 51073.TRNA-PRO-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: CGG)  transcript_id AT2G21360.1  
At2g21370	chr2:009139446	0.0	C/9139446-9139573,9139073-9139325,9138827-9138959,9138660-9138748,9138241-9138518,9138061-9138130,9137582-9137788	AT2G21370.2  CDS  gene_syn F3K23.13, F3K23_13  go_component chloroplast|GO:0009507|18431481|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_component cytoplasm|GO:0005737|15610358|IDA  go_function xylulokinase activity|GO:0004856||ISS  product xylulose kinase, putative  note xylulose kinase, putative; FUNCTIONS IN: xylulokinase activity, phosphotransferase activity, alcohol group as acceptor; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate kinase, FGGY (InterPro:IPR000577), Carbohydrate kinase, FGGY, C-terminal (InterPro:IPR018485); Has 2179 Blast hits to 2179 proteins in 585 species: Archae - 8; Bacteria - 1712; Metazoa - 3; Fungi - 10; Plants - 19; Viruses - 0; Other Eukaryotes - 427 (source: NCBI BLink).  protein_id AT2G21370.2p  transcript_id AT2G21370.2  protein_id AT2G21370.2p  transcript_id AT2G21370.2  
At2g21370	chr2:009139987	0.0	C/9139987-9140050,9139703-9139905,9139446-9139585,9139073-9139325,9138827-9138959,9138660-9138748,9138241-9138518,9138061-9138130,9137582-9137788	AT2G21370.1  CDS  gene_syn F3K23.13, F3K23_13  go_component chloroplast|GO:0009507|18431481|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process xylulose catabolic process|GO:0005998||IEA  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_component cytoplasm|GO:0005737|15610358|IDA  go_function xylulokinase activity|GO:0004856||ISS  product xylulose kinase, putative  note xylulose kinase, putative; FUNCTIONS IN: xylulokinase activity, phosphotransferase activity, alcohol group as acceptor; INVOLVED IN: carbohydrate metabolic process, xylulose catabolic process; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate kinase, FGGY (InterPro:IPR000577), Carbohydrate kinase, FGGY, N-terminal (InterPro:IPR018484), Carbohydrate kinase, FGGY, C-terminal (InterPro:IPR018485); Has 3007 Blast hits to 3007 proteins in 745 species: Archae - 15; Bacteria - 2446; Metazoa - 3; Fungi - 16; Plants - 20; Viruses - 0; Other Eukaryotes - 507 (source: NCBI BLink).  protein_id AT2G21370.1p  transcript_id AT2G21370.1  protein_id AT2G21370.1p  transcript_id AT2G21370.1  
At2g21380	chr2:009141833	0.0	W/9141833-9142176,9142319-9142416,9142528-9142617,9142747-9142799,9143094-9143159,9143272-9143325,9143577-9143636,9143830-9143908,9144002-9144069,9144202-9144258,9144340-9144444,9144723-9144827,9145054-9145161,9145294-9145425,9145515-9145697,9145828-9145968,9146183-9146320,9146508-9146627,9146741-9146791,9146892-9146939,9147063-9147200,9147385-9148095,9148571-9148712,9148798-9148883	AT2G21380.1  CDS  gene_syn F3K23.14, F3K23_14  go_component microtubule associated complex|GO:0005875||IEA  go_component chloroplast|GO:0009507||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function microtubule motor activity|GO:0003777||ISS  product kinesin motor protein-related  note kinesin motor protein-related; FUNCTIONS IN: protein binding, microtubule motor activity, zinc ion binding, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin-related protein (MKRP2) (TAIR:AT4G39050.1); Has 53752 Blast hits to 35961 proteins in 1500 species: Archae - 384; Bacteria - 4677; Metazoa - 26326; Fungi - 4186; Plants - 3009; Viruses - 360; Other Eukaryotes - 14810 (source: NCBI BLink).  protein_id AT2G21380.1p  transcript_id AT2G21380.1  protein_id AT2G21380.1p  transcript_id AT2G21380.1  
At2g21385	chr2:009149726	0.0	W/9149726-9149797,9149885-9149976,9150092-9150197,9150302-9150400,9150493-9150558,9150647-9150763,9150900-9150974,9151073-9151175,9151264-9151311,9151388-9151509,9151660-9151752	AT2G21385.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 20 Blast hits to 20 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G21385.1p  transcript_id AT2G21385.1  protein_id AT2G21385.1p  transcript_id AT2G21385.1  
At2g21385	chr2:009150162	0.0	W/9150162-9150197,9150302-9150400,9150493-9150558,9150647-9150763,9150900-9150974,9151073-9151175,9151264-9151311,9151388-9151509,9151660-9151752	AT2G21385.2  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 20 Blast hits to 20 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G21385.2p  transcript_id AT2G21385.2  protein_id AT2G21385.2p  transcript_id AT2G21385.2  
At2g21390	chr2:009152428	0.0	W/9152428-9152635,9153041-9153535,9153624-9156577	AT2G21390.1  CDS  gene_syn F3K23.15, F3K23_15  go_component membrane|GO:0016020|17432890|IDA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function structural molecule activity|GO:0005198||IEA  go_function protein binding|GO:0005515||IEA  go_component COPI vesicle coat|GO:0030126||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process ER to Golgi vesicle-mediated transport|GO:0006888||ISS  go_function transporter activity|GO:0005215||ISS  product coatomer protein complex, subunit alpha, putative  note coatomer protein complex, subunit alpha, putative; FUNCTIONS IN: protein binding, structural molecule activity, transporter activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPI vesicle coat, CUL4 RING ubiquitin ligase complex, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Coatomer, WD associated region (InterPro:IPR006692), WD40 repeat (InterPro:IPR001680), WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), Coatomer, alpha subunit (InterPro:IPR016391), Quinoprotein amine dehydrogenase, beta chain-like (InterPro:IPR011044), Coatomer, alpha subunit, C-terminal (InterPro:IPR010714); BEST Arabidopsis thaliana protein match is: coatomer protein complex, subunit alpha, putative (TAIR:AT1G62020.1); Has 60260 Blast hits to 22988 proteins in 592 species: Archae - 46; Bacteria - 5928; Metazoa - 28769; Fungi - 11355; Plants - 5473; Viruses - 0; Other Eukaryotes - 8689 (source: NCBI BLink).  protein_id AT2G21390.1p  transcript_id AT2G21390.1  protein_id AT2G21390.1p  transcript_id AT2G21390.1  
At2g21400	chr2:009158390	0.0	W/9158390-9158588,9159216-9159541	AT2G21400.1  CDS  gene_syn F3K23.16, F3K23_16, SHI-RELATED SEQUENCE3, SRS3  gene SRS3  function A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.  go_component cellular_component|GO:0005575||ND  product SRS3 (SHI-RELATED SEQUENCE3)  note SHI-RELATED SEQUENCE3 (SRS3); LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: STY1 (STYLISH 1); protein heterodimerization/ transcription factor (TAIR:AT3G51060.1); Has 88 Blast hits to 84 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G21400.1p  transcript_id AT2G21400.1  protein_id AT2G21400.1p  transcript_id AT2G21400.1  
At2g21410	chr2:009162703	0.0	W/9162703-9162858,9163006-9163050,9163137-9163259,9163351-9163458,9163732-9163839,9163918-9164091,9164402-9164539,9165146-9165253,9165359-9165466,9165548-9165696,9166054-9166207,9166404-9166564,9166657-9166863,9166951-9167134,9167218-9167301,9167392-9167585,9167778-9167837,9167937-9168141	AT2G21410.1  CDS  gene_syn F3K23.17, F3K23_17, VACUOLAR PROTON ATPASE A2, VHA-A2  gene VHA-A2  function Vacuolar proton ATPase subunit VHA-a isoform 2. Localized in the tonoplast.  go_component plant-type vacuole|GO:0000325|16618929|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component vacuolar membrane|GO:0005774|16618929|IDA  go_component plant-type vacuole membrane|GO:0009705|16461582|IDA  go_function ATPase activity|GO:0016887||ISS  product VHA-A2 (VACUOLAR PROTON ATPASE A2); ATPase  note VACUOLAR PROTON ATPASE A2 (VHA-A2); FUNCTIONS IN: ATPase activity; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, V0/A0 complex, 116-kDa subunit (InterPro:IPR002490); BEST Arabidopsis thaliana protein match is: VHA-A3 (VACUOLAR PROTON ATPASE A3); ATPase (TAIR:AT4G39080.1); Has 1771 Blast hits to 1519 proteins in 385 species: Archae - 208; Bacteria - 454; Metazoa - 599; Fungi - 133; Plants - 68; Viruses - 0; Other Eukaryotes - 309 (source: NCBI BLink).  protein_id AT2G21410.1p  transcript_id AT2G21410.1  protein_id AT2G21410.1p  transcript_id AT2G21410.1  
At2g21420	chr2:009169713	0.0	W/9169713-9170120,9170660-9171351,9171440-9171746	AT2G21420.1  CDS  gene_syn F3K23.18, F3K23_18  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product zinc finger protein-related  note zinc finger protein-related; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C6HC-type (InterPro:IPR002867); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT5G37560.1); Has 83230 Blast hits to 16827 proteins in 716 species: Archae - 298; Bacteria - 37638; Metazoa - 14167; Fungi - 7873; Plants - 3833; Viruses - 1265; Other Eukaryotes - 18156 (source: NCBI BLink).  protein_id AT2G21420.1p  transcript_id AT2G21420.1  protein_id AT2G21420.1p  transcript_id AT2G21420.1  
At2g21430	chr2:009172852	0.0	C/9172852-9173301,9172649-9172768,9171964-9172479	AT2G21430.1  CDS  gene_syn F3K23.19, F3K23_19  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product cysteine proteinase A494, putative / thiol protease, putative  note cysteine proteinase A494, putative / thiol protease, putative; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: RD19 (RESPONSIVE TO DEHYDRATION 19); cysteine-type endopeptidase/ cysteine-type peptidase (TAIR:AT4G39090.1); Has 6074 Blast hits to 6031 proteins in 584 species: Archae - 31; Bacteria - 96; Metazoa - 2794; Fungi - 4; Plants - 1193; Viruses - 124; Other Eukaryotes - 1832 (source: NCBI BLink).  protein_id AT2G21430.1p  transcript_id AT2G21430.1  protein_id AT2G21430.1p  transcript_id AT2G21430.1  
At2g21440	chr2:009178961	0.0	C/9178961-9179065,9178794-9178854,9178668-9178704,9178451-9178581,9178282-9178353,9177908-9178199,9177619-9177752,9176829-9176968,9176678-9176728,9176508-9176590,9176369-9176423,9176174-9176288,9175481-9176000,9175170-9175383,9174999-9175069,9174743-9174911,9174537-9174666,9173712-9174343	AT2G21440.1  CDS  gene_syn F3K23.20, F3K23_20  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: SCL28; RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT5G18810.1); Has 29840 Blast hits to 16953 proteins in 878 species: Archae - 28; Bacteria - 2817; Metazoa - 13587; Fungi - 3327; Plants - 3239; Viruses - 21; Other Eukaryotes - 6821 (source: NCBI BLink).  protein_id AT2G21440.1p  transcript_id AT2G21440.1  protein_id AT2G21440.1p  transcript_id AT2G21440.1  
At2g21450	chr2:009182060	0.0	C/9182060-9182356,9181781-9181987,9181503-9181655,9179622-9181415	AT2G21450.1  CDS  gene_syn CHR34, F3K23.21, F3K23_21, chromatin remodeling 34  gene CHR34  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function DNA binding|GO:0003677||ISS  go_function helicase activity|GO:0004386||ISS  go_function ATP binding|GO:0005524||ISS  product CHR34 (chromatin remodeling 34); ATP binding / DNA binding / helicase/ nucleic acid binding  note chromatin remodeling 34 (CHR34); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: DRD1 (DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1); ATP binding / DNA binding / helicase/ nucleic acid binding (TAIR:AT2G16390.1); Has 9407 Blast hits to 8209 proteins in 830 species: Archae - 36; Bacteria - 1835; Metazoa - 2826; Fungi - 2222; Plants - 612; Viruses - 184; Other Eukaryotes - 1692 (source: NCBI BLink).  protein_id AT2G21450.1p  transcript_id AT2G21450.1  protein_id AT2G21450.1p  transcript_id AT2G21450.1  
At2g21460	chr2:009188338	0.0	C/9188338-9194491	AT2G21460.1  mRNA_TE_gene  pseudo  gene_syn F3K23.22, F3K23_22  note Transposable element gene, copia-like retrotransposon family, has a 1.3e-303 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At2g21465	chr2:009195875	0.0	C/9195875-9195926,9195596-9195786	AT2G21465.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47317.1); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G21465.1p  transcript_id AT2G21465.1  protein_id AT2G21465.1p  transcript_id AT2G21465.1  
At2g21470	chr2:009198752	0.0	W/9198752-9198784,9198871-9198960,9199459-9199542,9199614-9199832,9199980-9200081,9200217-9200675,9200767-9200996,9201080-9201173,9201261-9201443,9201528-9201625,9201851-9202136	AT2G21470.1  CDS  gene_syn ATSAE2, EMB2764, EMBRYO DEFECTIVE 2764, F3K23.23, F3K23_23, SAE2, SUMO-ACTIVATING ENZYME 2  gene SAE2  function Encodes one of the two subunits of the SUMO activation enzyme required during sumolation. Sumolation is a post-translational protein modification process similar to ubiquitination during which a polypeptide (SUMO) is covalently attached to a target protein.  go_component cytosol|GO:0005829|18433157|IDA  go_process embryonic development ending in seed dormancy|GO:0009793|17644626|IMP  go_process protein sumoylation|GO:0016925|12482876|ISS  go_process protein sumoylation|GO:0016925|16920872|IDA  go_function SUMO activating enzyme activity|GO:0019948|12482876|ISS  go_function SUMO activating enzyme activity|GO:0019948|16920872|IDA  product SAE2 (SUMO-ACTIVATING ENZYME 2); SUMO activating enzyme  note SUMO-ACTIVATING ENZYME 2 (SAE2); FUNCTIONS IN: SUMO activating enzyme activity; INVOLVED IN: embryonic development ending in seed dormancy, protein sumoylation; LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-activating enzyme repeat (InterPro:IPR000127), UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594), Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: ECR1 (E1 C-terminal related 1); NEDD8 activating enzyme/ protein heterodimerization/ small protein activating enzyme (TAIR:AT5G19180.1); Has 9345 Blast hits to 8733 proteins in 1339 species: Archae - 133; Bacteria - 4237; Metazoa - 1426; Fungi - 717; Plants - 292; Viruses - 0; Other Eukaryotes - 2540 (source: NCBI BLink).  protein_id AT2G21470.1p  transcript_id AT2G21470.1  protein_id AT2G21470.1p  transcript_id AT2G21470.1  
At2g21470	chr2:009198752	0.0	W/9198752-9198784,9198871-9198960,9199459-9199542,9199614-9199832,9199980-9200081,9200217-9200675,9200767-9200996,9201080-9201173,9201261-9201443,9201528-9202136	AT2G21470.2  CDS  gene_syn ATSAE2, EMB2764, EMBRYO DEFECTIVE 2764, F3K23.23, F3K23_23, SAE2, SUMO-ACTIVATING ENZYME 2  gene SAE2  function Encodes one of the two subunits of the SUMO activation enzyme required during sumolation. Sumolation is a post-translational protein modification process similar to ubiquitination during which a polypeptide (SUMO) is covalently attached to a target protein.  go_component cytosol|GO:0005829|18433157|IDA  go_process embryonic development ending in seed dormancy|GO:0009793|17644626|IMP  go_process protein sumoylation|GO:0016925|12482876|ISS  go_process protein sumoylation|GO:0016925|16920872|IDA  go_function SUMO activating enzyme activity|GO:0019948|12482876|ISS  go_function SUMO activating enzyme activity|GO:0019948|16920872|IDA  product SAE2 (SUMO-ACTIVATING ENZYME 2); SUMO activating enzyme  note SUMO-ACTIVATING ENZYME 2 (SAE2); FUNCTIONS IN: SUMO activating enzyme activity; INVOLVED IN: embryonic development ending in seed dormancy, protein sumoylation; LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-activating enzyme repeat (InterPro:IPR000127), UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594), Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: ECR1 (E1 C-terminal related 1); NEDD8 activating enzyme/ protein heterodimerization/ small protein activating enzyme (TAIR:AT5G19180.1); Has 9342 Blast hits to 8728 proteins in 1339 species: Archae - 133; Bacteria - 4237; Metazoa - 1424; Fungi - 717; Plants - 294; Viruses - 0; Other Eukaryotes - 2537 (source: NCBI BLink).  protein_id AT2G21470.2p  transcript_id AT2G21470.2  protein_id AT2G21470.2p  transcript_id AT2G21470.2  
At2g21480	chr2:009202753	0.0	C/9202753-9205368	AT2G21480.1  CDS  gene_syn F3K23.24, F3K23_24  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G39110.1); Has 83124 Blast hits to 82249 proteins in 3084 species: Archae - 46; Bacteria - 7242; Metazoa - 36885; Fungi - 6448; Plants - 18478; Viruses - 349; Other Eukaryotes - 13676 (source: NCBI BLink).  protein_id AT2G21480.1p  transcript_id AT2G21480.1  protein_id AT2G21480.1p  transcript_id AT2G21480.1  
At2g21490	chr2:009206693	0.0	C/9206693-9207040,9206209-9206418	AT2G21490.1  CDS  gene_syn DEHYDRIN LEA, F3K23.25, F3K23_25, LEA  gene LEA  go_process response to stress|GO:0006950||IEA  go_process response to water|GO:0009415||IEA  go_component cellular_component|GO:0005575||ND  go_process response to stress|GO:0006950||ISS  go_process response to water|GO:0009415||ISS  go_function molecular_function|GO:0003674||ND  product LEA (DEHYDRIN LEA)  note DEHYDRIN LEA (LEA); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to water, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: dehydrin family protein (TAIR:AT4G39130.1); Has 1199 Blast hits to 1011 proteins in 136 species: Archae - 0; Bacteria - 3; Metazoa - 16; Fungi - 16; Plants - 1152; Viruses - 2; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT2G21490.1p  transcript_id AT2G21490.1  protein_id AT2G21490.1p  transcript_id AT2G21490.1  
At2g21500	chr2:009209287	0.0	C/9209287-9209575,9208980-9209026,9207965-9208894	AT2G21500.1  CDS  gene_syn F3K23.26, F3K23_26  go_component plasma membrane|GO:0005886|17317660|IDA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G39140.5); Has 194 Blast hits to 166 proteins in 38 species: Archae - 0; Bacteria - 2; Metazoa - 48; Fungi - 29; Plants - 92; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT2G21500.1p  transcript_id AT2G21500.1  protein_id AT2G21500.1p  transcript_id AT2G21500.1  
At2g21500	chr2:009209287	0.0	C/9209287-9209575,9208980-9209026,9207965-9208894	AT2G21500.2  CDS  gene_syn F3K23.26, F3K23_26  go_component plasma membrane|GO:0005886|17317660|IDA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G39140.5); Has 194 Blast hits to 166 proteins in 38 species: Archae - 0; Bacteria - 2; Metazoa - 48; Fungi - 29; Plants - 92; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT2G21500.2p  transcript_id AT2G21500.2  protein_id AT2G21500.2p  transcript_id AT2G21500.2  
At2g21510	chr2:009212613	0.0	C/9212613-9212699,9212454-9212513,9212257-9212339,9212020-9212185,9211801-9211930,9211551-9211709,9211273-9211451,9211089-9211169,9210841-9210936	AT2G21510.1  CDS  gene_syn F3K23.27, F3K23_27  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT4G39150.1); Has 16200 Blast hits to 16136 proteins in 1943 species: Archae - 111; Bacteria - 5305; Metazoa - 3371; Fungi - 1470; Plants - 1201; Viruses - 18; Other Eukaryotes - 4724 (source: NCBI BLink).  protein_id AT2G21510.1p  transcript_id AT2G21510.1  protein_id AT2G21510.1p  transcript_id AT2G21510.1  
At2g21520	chr2:009215956	0.0	W/9215956-9215989,9216208-9216623,9216698-9216964,9217043-9217120,9217198-9217299,9217388-9217437,9217538-9217637,9217728-9217826,9217915-9218028,9218099-9218228,9218430-9218953	AT2G21520.2  CDS  gene_syn F3K23.28, F3K23_28  go_component intracellular|GO:0005622||IEA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||IEA  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product transporter  note transporter; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative (TAIR:AT4G39170.1); Has 1907 Blast hits to 1902 proteins in 175 species: Archae - 0; Bacteria - 0; Metazoa - 708; Fungi - 393; Plants - 471; Viruses - 0; Other Eukaryotes - 335 (source: NCBI BLink).  protein_id AT2G21520.2p  transcript_id AT2G21520.2  protein_id AT2G21520.2p  transcript_id AT2G21520.2  
At2g21520	chr2:009215956	0.0	W/9215956-9215989,9216220-9216623,9216698-9216964,9217043-9217120,9217198-9217299,9217388-9217437,9217538-9217637,9217728-9217826,9217915-9218028,9218099-9218228,9218430-9218953	AT2G21520.1  CDS  gene_syn F3K23.28, F3K23_28  go_component intracellular|GO:0005622||IEA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||IEA  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product transporter  note transporter; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative (TAIR:AT4G39170.1); Has 1907 Blast hits to 1902 proteins in 175 species: Archae - 0; Bacteria - 0; Metazoa - 708; Fungi - 393; Plants - 471; Viruses - 0; Other Eukaryotes - 335 (source: NCBI BLink).  protein_id AT2G21520.1p  transcript_id AT2G21520.1  protein_id AT2G21520.1p  transcript_id AT2G21520.1  
At2g21530	chr2:009219372	0.0	W/9219372-9219648,9219744-9219808,9219894-9219954,9220147-9220293,9220385-9220464	AT2G21530.1  CDS  gene_syn F3K23.29, F3K23_29  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process biological_process|GO:0008150||ND  product forkhead-associated domain-containing protein / FHA domain-containing protein  note forkhead-associated domain-containing protein / FHA domain-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (InterPro:IPR000253); Has 272 Blast hits to 268 proteins in 85 species: Archae - 10; Bacteria - 143; Metazoa - 3; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT2G21530.1p  transcript_id AT2G21530.1  protein_id AT2G21530.1p  transcript_id AT2G21530.1  
At2g21540	chr2:009223692	0.0	C/9223692-9223737,9223263-9223609,9222917-9223183,9222738-9222815,9222535-9222636,9222398-9222447,9222213-9222312,9222039-9222128,9221943-9221960,9221743-9221854,9221192-9221541,9220946-9221017,9220831-9220845	AT2G21540.1  CDS  gene_syn ATSFH3, F3K23.30, SEC14-LIKE 3, SFH3  gene SFH3  go_component intracellular|GO:0005622||IEA  go_process transport|GO:0006810||ISS  go_process flower development|GO:0009908|16697077|IDA  go_function phosphatidylinositol transporter activity|GO:0008526|16697077|IGI  go_function phosphatidylinositol transporter activity|GO:0008526||ISS  product SFH3 (SEC14-LIKE 3); phosphatidylinositol transporter  note SEC14-LIKE 3 (SFH3); FUNCTIONS IN: phosphatidylinositol transporter activity; INVOLVED IN: flower development, transport; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14; phosphatidylinositol transporter (TAIR:AT4G39180.1); Has 2080 Blast hits to 2076 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 815; Fungi - 459; Plants - 466; Viruses - 0; Other Eukaryotes - 340 (source: NCBI BLink).  protein_id AT2G21540.1p  transcript_id AT2G21540.1  protein_id AT2G21540.1p  transcript_id AT2G21540.1  
At2g21540	chr2:009223692	0.0	C/9223692-9223737,9223263-9223609,9222917-9223183,9222738-9222815,9222535-9222636,9222398-9222447,9222213-9222312,9222039-9222128,9221943-9221960,9221743-9221854,9221192-9221541,9220946-9221017,9220831-9220845	AT2G21540.2  CDS  gene_syn ATSFH3, F3K23.30, SEC14-LIKE 3, SFH3  gene SFH3  go_component intracellular|GO:0005622||IEA  go_process transport|GO:0006810||ISS  go_process flower development|GO:0009908|16697077|IDA  go_function phosphatidylinositol transporter activity|GO:0008526|16697077|IGI  go_function phosphatidylinositol transporter activity|GO:0008526||ISS  product SFH3 (SEC14-LIKE 3); phosphatidylinositol transporter  note SEC14-LIKE 3 (SFH3); FUNCTIONS IN: phosphatidylinositol transporter activity; INVOLVED IN: flower development, transport; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14; phosphatidylinositol transporter (TAIR:AT4G39180.1); Has 2080 Blast hits to 2076 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 815; Fungi - 459; Plants - 466; Viruses - 0; Other Eukaryotes - 340 (source: NCBI BLink).  protein_id AT2G21540.2p  transcript_id AT2G21540.2  protein_id AT2G21540.2p  transcript_id AT2G21540.2  
At2g21550	chr2:009227209	0.0	W/9227209-9227636,9227861-9228221,9228308-9228352,9228450-9228515,9229202-9229254,9229326-9229412,9229481-9229613,9229724-9229847,9229924-9230030,9230115-9230189	AT2G21550.1  CDS  gene_syn F2G1.18, F2G1_18  go_process dTMP biosynthetic process|GO:0006231||IEA  go_process glycine biosynthetic process|GO:0006545||IEA  go_process one-carbon compound metabolic process|GO:0006730||IEA  go_process nucleotide biosynthetic process|GO:0009165||IEA  go_function dihydrofolate reductase activity|GO:0004146||IEA  go_function thymidylate synthase activity|GO:0004799||IEA  product bifunctional dihydrofolate reductase-thymidylate synthase, putative / DHFR-TS, putative  note bifunctional dihydrofolate reductase-thymidylate synthase, putative / DHFR-TS, putative; FUNCTIONS IN: thymidylate synthase activity, dihydrofolate reductase activity; INVOLVED IN: glycine biosynthetic process, one-carbon compound metabolic process, nucleotide biosynthetic process, dTMP biosynthetic process; EXPRESSED IN: stem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Dihydrofolate reductase region (InterPro:IPR001796), Dihydrofolate reductase conserved site (InterPro:IPR017925), Bifunctional dihydrofolate reductase/thymidylate synthase (InterPro:IPR012262), Thymidylate synthase, C-terminal (InterPro:IPR000398); BEST Arabidopsis thaliana protein match is: THY-1 (THYMIDYLATE SYNTHASE 1); dihydrofolate reductase/ thymidylate synthase (TAIR:AT2G16370.1); Has 8212 Blast hits to 8187 proteins in 1426 species: Archae - 15; Bacteria - 4426; Metazoa - 386; Fungi - 306; Plants - 51; Viruses - 195; Other Eukaryotes - 2833 (source: NCBI BLink).  protein_id AT2G21550.1p  transcript_id AT2G21550.1  protein_id AT2G21550.1p  transcript_id AT2G21550.1  
At2g21560	chr2:009230473	0.0	C/9230473-9231297	AT2G21560.1  CDS  gene_syn F2G1.17, F2G1_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G39190.1); Has 3646 Blast hits to 2209 proteins in 221 species: Archae - 0; Bacteria - 120; Metazoa - 1218; Fungi - 305; Plants - 132; Viruses - 6; Other Eukaryotes - 1865 (source: NCBI BLink).  protein_id AT2G21560.1p  transcript_id AT2G21560.1  protein_id AT2G21560.1p  transcript_id AT2G21560.1  
At2g21570	chr2:009234240	0.0	C/9234240-9234276	AT2G21570.1  tRNA  gene_syn 51106.TRNA-TYR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT2G21570.1  
At2g21580	chr2:009236629	0.0	W/9236629-9236631,9236722-9236796,9237145-9237279,9237397-9237510	AT2G21580.1  CDS  gene_syn F2G1.15, F2G1_15  go_component plasma membrane|GO:0005886|17151019|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S25 (RPS25B)  note 40S ribosomal protein S25 (RPS25B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S25 (InterPro:IPR004977); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S25 (RPS25E) (TAIR:AT4G39200.2); Has 502 Blast hits to 502 proteins in 179 species: Archae - 5; Bacteria - 0; Metazoa - 227; Fungi - 100; Plants - 93; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT2G21580.1p  transcript_id AT2G21580.1  protein_id AT2G21580.1p  transcript_id AT2G21580.1  
At2g21580	chr2:009236629	0.0	W/9236629-9236631,9236722-9236796,9237148-9237279,9237397-9237510	AT2G21580.2  CDS  gene_syn F2G1.15, F2G1_15  go_component plasma membrane|GO:0005886|17151019|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S25 (RPS25B)  note 40S ribosomal protein S25 (RPS25B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S25 (InterPro:IPR004977); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S25 (RPS25E) (TAIR:AT4G39200.2); Has 511 Blast hits to 511 proteins in 182 species: Archae - 8; Bacteria - 0; Metazoa - 227; Fungi - 100; Plants - 93; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT2G21580.2p  transcript_id AT2G21580.2  protein_id AT2G21580.2p  transcript_id AT2G21580.2  
At2g21590	chr2:009239362	0.0	W/9239362-9239583,9239716-9239838,9239984-9240154,9240239-9240331,9240421-9240504,9240586-9240641,9240721-9240814,9240888-9241073,9241162-9241242,9241316-9241402,9241492-9241596,9241690-9241796,9241899-9241959,9242049-9242150	AT2G21590.1  CDS  gene_syn APL4, F2G1.14, F2G1_14  gene APL4  function Encodes the large subunit of ADP-glucose pyrophosphorylase, the enzyme which catalyzes the first and limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms of the large subunit (ApL1-4) have been described.  go_component glucose-1-phosphate adenylyltransferase complex|GO:0010170|12748181|IDA  go_process starch biosynthetic process|GO:0019252|12748181|TAS  go_function glucose-1-phosphate adenylyltransferase activity|GO:0008878|12748181|IDA  go_function glucose-1-phosphate adenylyltransferase activity|GO:0008878|18614708|IDA  go_function glucose-1-phosphate adenylyltransferase activity|GO:0008878||ISS  product APL4; glucose-1-phosphate adenylyltransferase  note APL4; FUNCTIONS IN: glucose-1-phosphate adenylyltransferase activity; INVOLVED IN: starch biosynthetic process; LOCATED IN: glucose-1-phosphate adenylyltransferase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-1-phosphate adenylyltransferase (InterPro:IPR011831), ADP-glucose pyrophosphorylase, conserved site (InterPro:IPR005836), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: APL3; glucose-1-phosphate adenylyltransferase (TAIR:AT4G39210.1); Has 5254 Blast hits to 5217 proteins in 974 species: Archae - 219; Bacteria - 2781; Metazoa - 22; Fungi - 7; Plants - 1366; Viruses - 0; Other Eukaryotes - 859 (source: NCBI BLink).  protein_id AT2G21590.1p  transcript_id AT2G21590.1  protein_id AT2G21590.1p  transcript_id AT2G21590.1  
At2g21590	chr2:009239362	0.0	W/9239362-9239583,9239716-9239838,9239984-9240154,9240239-9240331,9240421-9240504,9240586-9240641,9240721-9240814,9240888-9241073,9241162-9241242,9241316-9241402,9241492-9241596,9241690-9241796,9241899-9241959,9242049-9242150	AT2G21590.2  CDS  gene_syn APL4, F2G1.14, F2G1_14  gene APL4  function Encodes the large subunit of ADP-glucose pyrophosphorylase, the enzyme which catalyzes the first and limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms of the large subunit (ApL1-4) have been described.  go_component glucose-1-phosphate adenylyltransferase complex|GO:0010170|12748181|IDA  go_process starch biosynthetic process|GO:0019252|12748181|TAS  go_function glucose-1-phosphate adenylyltransferase activity|GO:0008878|12748181|IDA  go_function glucose-1-phosphate adenylyltransferase activity|GO:0008878|18614708|IDA  go_function glucose-1-phosphate adenylyltransferase activity|GO:0008878||ISS  product APL4; glucose-1-phosphate adenylyltransferase  note APL4; FUNCTIONS IN: glucose-1-phosphate adenylyltransferase activity; INVOLVED IN: starch biosynthetic process; LOCATED IN: glucose-1-phosphate adenylyltransferase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-1-phosphate adenylyltransferase (InterPro:IPR011831), ADP-glucose pyrophosphorylase, conserved site (InterPro:IPR005836), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: APL3; glucose-1-phosphate adenylyltransferase (TAIR:AT4G39210.1); Has 5254 Blast hits to 5217 proteins in 974 species: Archae - 219; Bacteria - 2781; Metazoa - 22; Fungi - 7; Plants - 1366; Viruses - 0; Other Eukaryotes - 859 (source: NCBI BLink).  protein_id AT2G21590.2p  transcript_id AT2G21590.2  protein_id AT2G21590.2p  transcript_id AT2G21590.2  
At2g21600	chr2:009243550	0.0	W/9243550-9243899,9244172-9244352,9244523-9244579	AT2G21600.1  CDS  gene_syn ARABIDOPSIS THALIANA ENDOPLASMATIC RETICULUM RETRIEVAL PROTEIN 1B, ATRER1B, F2G1.13, F2G1_13  gene ATRER1B  function Key player of retrieval of ER membrane proteins  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component Golgi apparatus|GO:0005794|10972878|IDA  go_component cis-Golgi network|GO:0005801|10972878|TAS  go_process retrograde vesicle-mediated transport, Golgi to ER|GO:0006890|10737146|IMP  go_function molecular_function|GO:0003674||ND  product ATRER1B  note ATRER1B; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: retrograde vesicle-mediated transport, Golgi to ER; LOCATED IN: endoplasmic reticulum, Golgi apparatus, cis-Golgi network; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Retrieval of early ER protein Rer1 (InterPro:IPR004932); BEST Arabidopsis thaliana protein match is: ATRER1A (TAIR:AT4G39220.1); Has 367 Blast hits to 363 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 104; Plants - 76; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT2G21600.1p  transcript_id AT2G21600.1  protein_id AT2G21600.1p  transcript_id AT2G21600.1  
At2g21610	chr2:009246754	0.0	C/9246754-9247025,9246344-9246503,9246007-9246195,9245448-9245683,9245161-9245362	AT2G21610.1  CDS  gene_syn A. THALIANA PECTINESTERASE 11, ATPE11, F2G1.12, F2G1_12, PE11, PECTINESTERASE 11  gene PE11  go_component cell wall|GO:0005618||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process cell wall modification|GO:0042545||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: N-terminal protein myristoylation, cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT5G19730.1); Has 1230 Blast hits to 1200 proteins in 177 species: Archae - 2; Bacteria - 256; Metazoa - 1; Fungi - 134; Plants - 836; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G21610.1p  transcript_id AT2G21610.1  protein_id AT2G21610.1p  transcript_id AT2G21610.1  
At2g21620	chr2:009248749	0.0	W/9248749-9248980,9249089-9249168,9249538-9249656,9249769-9249845,9249931-9249986	AT2G21620.1  CDS  gene_syn F2G1.11, F2G1_11, RD2  gene RD2  function Encodes gene that is induced in response to dessication; mRNA expression is seen 10 and 24 hrs after start of dessication treatment.  go_component cellular_component|GO:0005575||ND  go_process response to stress|GO:0006950||ISS  go_process response to desiccation|GO:0009269||IEP  go_function molecular_function|GO:0003674||ND  product RD2  note RD2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to desiccation, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729); BEST Arabidopsis thaliana protein match is: universal stress protein (USP) family protein (TAIR:AT3G11930.1); Has 594 Blast hits to 594 proteins in 125 species: Archae - 44; Bacteria - 146; Metazoa - 41; Fungi - 38; Plants - 312; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT2G21620.1p  transcript_id AT2G21620.1  protein_id AT2G21620.1p  transcript_id AT2G21620.1  
At2g21620	chr2:009248749	0.0	W/9248749-9248998,9249089-9249168,9249538-9249656,9249769-9249845,9249931-9249986	AT2G21620.2  CDS  gene_syn F2G1.11, F2G1_11, RD2  gene RD2  function Encodes gene that is induced in response to dessication; mRNA expression is seen 10 and 24 hrs after start of dessication treatment.  go_component cellular_component|GO:0005575||ND  go_process response to stress|GO:0006950||ISS  go_process response to desiccation|GO:0009269||IEP  go_function molecular_function|GO:0003674||ND  product RD2  note RD2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to desiccation, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729); BEST Arabidopsis thaliana protein match is: universal stress protein (USP) family protein (TAIR:AT3G11930.1); Has 630 Blast hits to 630 proteins in 131 species: Archae - 48; Bacteria - 162; Metazoa - 43; Fungi - 40; Plants - 321; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT2G21620.2p  transcript_id AT2G21620.2  protein_id AT2G21620.2p  transcript_id AT2G21620.2  
At2g21630	chr2:009250346	0.0	W/9250346-9251251,9251337-9251498,9251584-9251726,9251840-9251915,9251990-9252165,9252261-9252342,9252685-9252762,9252863-9253024,9253121-9253384,9253478-9253582,9253698-9253829	AT2G21630.1  CDS  gene_syn F2G1.10, F2G1_10  go_component COPII vesicle coat|GO:0030127||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process ER to Golgi vesicle-mediated transport|GO:0006888||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product transport protein, putative  note transport protein, putative; FUNCTIONS IN: protein binding, transporter activity, zinc ion binding; INVOLVED IN: intracellular protein transport, transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24 helical region (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24 trunk region (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin region (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: transport protein, putative (TAIR:AT4G14160.2); Has 1128 Blast hits to 1116 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 452; Fungi - 357; Plants - 148; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).  protein_id AT2G21630.1p  transcript_id AT2G21630.1  protein_id AT2G21630.1p  transcript_id AT2G21630.1  
At2g21640	chr2:009254985	0.0	W/9254985-9255194,9255349-9255453	AT2G21640.1  CDS  gene_syn F2G1.9, F2G1_9  function Encodes a protein of unknown function that is a marker for oxidative stress response.  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process response to oxidative stress|GO:0006979|12492832|IDA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: mitochondrion; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G39235.1); Has 39 Blast hits to 39 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G21640.1p  transcript_id AT2G21640.1  protein_id AT2G21640.1p  transcript_id AT2G21640.1  
At2g21650	chr2:009259654	0.0	W/9259654-9259934,9260395-9260419	AT2G21650.1  CDS  gene_syn ARABIDOPSIS RAD-LIKE 2, ATRL2, F2G1.8, F2G1_8, MATERNAL EFFECT EMBRYO ARREST 3, MEE3  gene MEE3  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product MEE3 (MATERNAL EFFECT EMBRYO ARREST 3); DNA binding / transcription factor  note MATERNAL EFFECT EMBRYO ARREST 3 (MEE3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: embryonic development ending in seed dormancy, regulation of transcription, DNA-dependent; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Homeodomain-like (InterPro:IPR009057), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: ATRL1 (ARABIDOPSIS RAD-LIKE 1); DNA binding / transcription factor (TAIR:AT4G39250.1); Has 351 Blast hits to 351 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 82; Fungi - 0; Plants - 268; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G21650.1p  transcript_id AT2G21650.1  protein_id AT2G21650.1p  transcript_id AT2G21650.1  
At2g21655	chr2:009263584	0.0	W/9263584-9264054	AT2G21655.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, sepal; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G29797.1); Has 42 Blast hits to 42 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G21655.1p  transcript_id AT2G21655.1  protein_id AT2G21655.1p  transcript_id AT2G21655.1  
At2g21660	chr2:009266203	0.0	C/9266203-9266316,9265477-9265893	AT2G21660.1  CDS  gene_syn ATGRP7, CCR2, COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2, F2G1.4, GLYCINE RICH PROTEIN 7, GLYCINE-RICH RNA-BINDING PROTEIN 7, GR-RBP7, GRP7  gene CCR2  function Encodes a small glycine-rich RNA binding protein that is part of a negative-feedback loop through which AtGRP7 regulates the circadian oscillations of its own transcript. Gene expression is induced by cold. GRP7 appears to promote stomatal opening and reduce tolerance under salt and dehydration stress conditions, but, promotes stomatal closing and thereby increases stress tolerance under conditions of cold tolerance. Loss of function mutations have increased susceptibility to pathogens suggesting a role in mediating innate immune response. Mutants are also late flowering in a non-photoperiodic manner and are responsive to vernalization suggesting an interaction with the autonomous flowering pathway. There is a reduction of mRNA export from the nucleus in grp7 mutants. GRP7:GFP fusion proteins can be found in the cytosol and nucleus. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component nucleus|GO:0005634|18410480|IDA  go_component nucleus|GO:0005634|9238008|ISS  go_component cytoplasm|GO:0005737|18410480|IDA  go_process mRNA export from nucleus|GO:0006406|18410480|IMP  go_process response to osmotic stress|GO:0006970|18410480|IMP  go_process circadian rhythm|GO:0007623|17924945|IEP  go_process circadian rhythm|GO:0007623|9238008|IEP  go_process circadian rhythm|GO:0007623|9238008|TAS  go_process response to cold|GO:0009409|16207746|IEP  go_process response to cold|GO:0009409|17169986|IGI  go_process regulation of stomatal movement|GO:0010119|18410480|IMP  go_process vegetative to reproductive phase transition|GO:0010228|18573194|IMP  go_process RNA secondary structure unwinding|GO:0010501|17169986|IDA  go_process DNA duplex unwinding|GO:0032508|17169986|IDA  go_process innate immune response|GO:0045087|17450127|IDA  go_process innate immune response|GO:0045087|17450127|IMP  go_process innate immune response|GO:0045087|18573194|IMP  go_function double-stranded DNA binding|GO:0003690|16207746|IDA  go_function single-stranded DNA binding|GO:0003697|16207746|IDA  go_function RNA binding|GO:0003723|17169986|IDA  go_function RNA binding|GO:0003723|8448367|ISS  go_function RNA binding|GO:0003723||ISS  product CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding / double-stranded DNA binding / single-stranded DNA binding  note COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2 (CCR2); FUNCTIONS IN: double-stranded DNA binding, single-stranded DNA binding, RNA binding; INVOLVED IN: in 11 processes; LOCATED IN: nucleus, chloroplast, peroxisome, cytoplasm; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: GR-RBP8; RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT4G39260.3); Has 135434 Blast hits to 44672 proteins in 1858 species: Archae - 182; Bacteria - 36251; Metazoa - 50266; Fungi - 9971; Plants - 14745; Viruses - 1575; Other Eukaryotes - 22444 (source: NCBI BLink).  protein_id AT2G21660.1p  transcript_id AT2G21660.1  protein_id AT2G21660.1p  transcript_id AT2G21660.1  
At2g21660	chr2:009266203	0.0	C/9266203-9266316,9265716-9265893,9265477-9265664	AT2G21660.2  CDS  gene_syn ATGRP7, CCR2, COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2, F2G1.4, GLYCINE RICH PROTEIN 7, GLYCINE-RICH RNA-BINDING PROTEIN 7, GR-RBP7, GRP7  gene CCR2  function Encodes a small glycine-rich RNA binding protein that is part of a negative-feedback loop through which AtGRP7 regulates the circadian oscillations of its own transcript. Gene expression is induced by cold. GRP7 appears to promote stomatal opening and reduce tolerance under salt and dehydration stress conditions, but, promotes stomatal closing and thereby increases stress tolerance under conditions of cold tolerance. Loss of function mutations have increased susceptibility to pathogens suggesting a role in mediating innate immune response. Mutants are also late flowering in a non-photoperiodic manner and are responsive to vernalization suggesting an interaction with the autonomous flowering pathway. There is a reduction of mRNA export from the nucleus in grp7 mutants. GRP7:GFP fusion proteins can be found in the cytosol and nucleus. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component nucleus|GO:0005634|18410480|IDA  go_component nucleus|GO:0005634|9238008|ISS  go_component cytoplasm|GO:0005737|18410480|IDA  go_process mRNA export from nucleus|GO:0006406|18410480|IMP  go_process response to osmotic stress|GO:0006970|18410480|IMP  go_process circadian rhythm|GO:0007623|17924945|IEP  go_process circadian rhythm|GO:0007623|9238008|IEP  go_process circadian rhythm|GO:0007623|9238008|TAS  go_process response to cold|GO:0009409|16207746|IEP  go_process response to cold|GO:0009409|17169986|IGI  go_process regulation of stomatal movement|GO:0010119|18410480|IMP  go_process vegetative to reproductive phase transition|GO:0010228|18573194|IMP  go_process RNA secondary structure unwinding|GO:0010501|17169986|IDA  go_process DNA duplex unwinding|GO:0032508|17169986|IDA  go_process innate immune response|GO:0045087|17450127|IDA  go_process innate immune response|GO:0045087|17450127|IMP  go_process innate immune response|GO:0045087|18573194|IMP  go_function double-stranded DNA binding|GO:0003690|16207746|IDA  go_function single-stranded DNA binding|GO:0003697|16207746|IDA  go_function RNA binding|GO:0003723|17169986|IDA  go_function RNA binding|GO:0003723|8448367|ISS  go_function RNA binding|GO:0003723||ISS  product CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding / double-stranded DNA binding / single-stranded DNA binding  note GLYCINE RICH PROTEIN 7 (ATGRP7); FUNCTIONS IN: double-stranded DNA binding, single-stranded DNA binding, RNA binding; INVOLVED IN: in 11 processes; LOCATED IN: nucleus, chloroplast, peroxisome, cytoplasm; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: GR-RBP8; RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT4G39260.3); Has 110798 Blast hits to 38809 proteins in 1717 species: Archae - 136; Bacteria - 32740; Metazoa - 39952; Fungi - 7720; Plants - 12540; Viruses - 1175; Other Eukaryotes - 16535 (source: NCBI BLink).  protein_id AT2G21660.2p  transcript_id AT2G21660.2  protein_id AT2G21660.2p  transcript_id AT2G21660.2  
At2g21670	chr2:009266809	0.0	C/9266809-9266889	AT2G21670.1  tRNA  gene_syn 51106.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: AAG)  transcript_id AT2G21670.1  
At2g21680	chr2:009267730	0.0	W/9267730-9269019	AT2G21680.1  CDS  gene_syn F2G1.5, F2G1_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Kelch repeat type 1 (InterPro:IPR006652), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT2G29810.1); Has 555 Blast hits to 535 proteins in 45 species: Archae - 0; Bacteria - 8; Metazoa - 79; Fungi - 0; Plants - 465; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G21680.1p  transcript_id AT2G21680.1  protein_id AT2G21680.1p  transcript_id AT2G21680.1  
At2g21690	chr2:009270487	0.0	C/9270487-9270597,9270114-9270356	AT2G21690.1  CDS  gene_syn F7D8.1, F7D8_1  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function RNA binding|GO:0003723||ISS  product RNA-binding protein, putative  note RNA-binding protein, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: GR-RBP8; RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT4G39260.3); Has 10200 Blast hits to 8412 proteins in 484 species: Archae - 0; Bacteria - 509; Metazoa - 6315; Fungi - 894; Plants - 1699; Viruses - 0; Other Eukaryotes - 783 (source: NCBI BLink).  protein_id AT2G21690.1p  transcript_id AT2G21690.1  protein_id AT2G21690.1p  transcript_id AT2G21690.1  
At2g21700	chr2:009270663	0.0	C/9270663-9270734	AT2G21700.1  tRNA  gene_syn 51065.TRNA-GLN-1, 51106.TRNA-GLN-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gln (anticodon: CTG)  transcript_id AT2G21700.1  
At2g21710	chr2:009270886	0.0	W/9270886-9271541,9271673-9272081,9272160-9272375,9272465-9272572,9272699-9272973,9273046-9273307	AT2G21710.1  CDS  gene_syn EMB2219, F7D8.3, F7D8_3, embryo defective 2219  gene EMB2219  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product EMB2219 (embryo defective 2219)  note embryo defective 2219 (EMB2219); INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: mitochondrial transcription termination factor family protein / mTERF family protein (TAIR:AT4G02990.1); Has 749 Blast hits to 509 proteins in 64 species: Archae - 0; Bacteria - 0; Metazoa - 137; Fungi - 0; Plants - 555; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT2G21710.1p  transcript_id AT2G21710.1  protein_id AT2G21710.1p  transcript_id AT2G21710.1  
At2g21720	chr2:009273696	0.0	W/9273696-9273934,9274147-9274381,9274460-9274561,9274655-9274824,9274934-9275067,9275144-9275321,9275406-9275973,9276051-9276163,9276244-9276490,9276584-9276802	AT2G21720.1  CDS  gene_syn F7D8.4, F7D8_4  product unknown protein  note unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF639 (InterPro:IPR006927); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23390.1); Has 83 Blast hits to 79 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G21720.1p  transcript_id AT2G21720.1  protein_id AT2G21720.1p  transcript_id AT2G21720.1  
At2g21725	chr2:009277659	0.0	W/9277659-9277737,9277894-9278072	AT2G21725.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G21725.1p  transcript_id AT2G21725.1  protein_id AT2G21725.1p  transcript_id AT2G21725.1  
At2g21727	chr2:009278597	0.0	C/9278597-9279052	AT2G21727.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G29797.1); Has 40 Blast hits to 40 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G21727.1p  transcript_id AT2G21727.1  protein_id AT2G21727.1p  transcript_id AT2G21727.1  
At2g21730	chr2:009280054	0.0	W/9280054-9280133,9280239-9280352,9280591-9281264,9281361-9281623	AT2G21730.1  CDS  gene_syn ATCAD2, CAD2, CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2, F7D8.5, F7D8_5  gene CAD2  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2); binding / catalytic/ oxidoreductase/ zinc ion binding  note CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2 (CAD2); FUNCTIONS IN: oxidoreductase activity, binding, zinc ion binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: CAD3 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 3); binding / catalytic/ oxidoreductase/ zinc ion binding (TAIR:AT2G21890.1); Has 23881 Blast hits to 23870 proteins in 1855 species: Archae - 392; Bacteria - 13737; Metazoa - 1258; Fungi - 1859; Plants - 2084; Viruses - 3; Other Eukaryotes - 4548 (source: NCBI BLink).  protein_id AT2G21730.1p  transcript_id AT2G21730.1  protein_id AT2G21730.1p  transcript_id AT2G21730.1  
At2g21740	chr2:009281986	0.0	C/9281986-9282363	AT2G21740.1  CDS  gene_syn F7D8.6, F7D8_6  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: embryo; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1278 (InterPro:IPR010701); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G21750.1); Has 43 Blast hits to 43 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G21740.1p  transcript_id AT2G21740.1  protein_id AT2G21740.1p  transcript_id AT2G21740.1  
At2g21750	chr2:009283367	0.0	C/9283367-9283744	AT2G21750.1  CDS  gene_syn F7D8.7, F7D8_7  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1278 (InterPro:IPR010701); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G21740.1); Has 43 Blast hits to 43 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G21750.1p  transcript_id AT2G21750.1  protein_id AT2G21750.1p  transcript_id AT2G21750.1  
At2g21760	chr2:009284034	0.0	W/9284034-9284105	AT2G21760.1  tRNA  gene_syn 51065.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: GAG)  transcript_id AT2G21760.1  
At2g21770	chr2:009284837	0.0	W/9284837-9284917,9285346-9285541,9285618-9285820,9285904-9286006,9286094-9286286,9286370-9286982,9287082-9287219,9287297-9287422,9287504-9287716,9287802-9288069,9288163-9288359,9288444-9288794,9288911-9289495	AT2G21770.1  CDS  gene_syn CELLULOSE SYNTHASE A9, CESA09, CESA9, F7D8.9, F7D8_9  gene CESA9  function cellulose synthase, related to CESA6.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|10330464|TAS  go_process plant-type cell wall biogenesis|GO:0009832|9165747|TAS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  product CESA9 (CELLULOSE SYNTHASE A9); cellulose synthase/ transferase, transferring glycosyl groups  note CELLULOSE SYNTHASE A9 (CESA9); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: plant-type cell wall biogenesis; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: CESA2 (CELLULOSE SYNTHASE A2); cellulose synthase/ transferase, transferring glycosyl groups (TAIR:AT4G39350.1); Has 2154 Blast hits to 1910 proteins in 419 species: Archae - 4; Bacteria - 702; Metazoa - 1; Fungi - 14; Plants - 1365; Viruses - 5; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT2G21770.1p  transcript_id AT2G21770.1  protein_id AT2G21770.1p  transcript_id AT2G21770.1  
At2g21780	chr2:009291054	0.0	W/9291054-9291392	AT2G21780.1  CDS  gene_syn F7D8.10, F7D8_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; Has 9 Blast hits to 9 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G21780.1p  transcript_id AT2G21780.1  protein_id AT2G21780.1p  transcript_id AT2G21780.1  
At2g21790	chr2:009293529	0.0	W/9293529-9293756,9293903-9293964,9294062-9294149,9294266-9294529,9294632-9294872,9294963-9295039,9295137-9295307,9295399-9295491,9295580-9295729,9295812-9295898,9296017-9296181,9296263-9296382,9296482-9296684,9296771-9296920,9297005-9297152,9297287-9297370,9297461-9297580	AT2G21790.1  CDS  gene_syn ATRNR1, CLS8, CRINKLY LEAVES 8, R1, RIBONUCLEOTIDE REDUCTASE 1, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, RNR1  gene RNR1  function encodes large subunit of ribonucleotide reductase involved in the production of deoxyribonucleoside triphosphates (dNTPs) for DNA replication and repair  go_component ribonucleoside-diphosphate reductase complex|GO:0005971||IEA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ribonucleoside-diphosphate reductase activity|GO:0004748||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component ribonucleoside-diphosphate reductase complex|GO:0005971||ISS  go_process DNA replication|GO:0006260|17346262|IMP  go_process DNA replication|GO:0006260||ISS  go_process deoxyribonucleoside triphosphate biosynthetic process|GO:0009202|17346262|IMP  go_function ribonucleoside-diphosphate reductase activity|GO:0004748||ISS  product RNR1 (RIBONUCLEOTIDE REDUCTASE 1); ATP binding / protein binding / ribonucleoside-diphosphate reductase  note RIBONUCLEOTIDE REDUCTASE 1 (RNR1); FUNCTIONS IN: protein binding, ribonucleoside-diphosphate reductase activity, ATP binding; INVOLVED IN: response to cadmium ion, deoxyribonucleoside triphosphate biosynthetic process, DNA replication; LOCATED IN: ribonucleoside-diphosphate reductase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonucleotide reductase large subunit, N-terminal (InterPro:IPR013509), Ribonucleoside-diphosphate reductase, alpha subunit (InterPro:IPR013346), ATP-cone (InterPro:IPR005144), Ribonucleotide reductase large subunit, C-terminal (InterPro:IPR000788), Ribonucleotide reductase R1 subunit, N-terminal (InterPro:IPR008926); Has 12017 Blast hits to 11672 proteins in 1615 species: Archae - 125; Bacteria - 3449; Metazoa - 145; Fungi - 140; Plants - 45; Viruses - 498; Other Eukaryotes - 7615 (source: NCBI BLink).  protein_id AT2G21790.1p  transcript_id AT2G21790.1  protein_id AT2G21790.1p  transcript_id AT2G21790.1  
At2g21800	chr2:009298196	0.0	W/9298196-9298448,9298667-9298804,9298911-9298975,9299264-9299431,9299512-9299665,9299768-9299877,9300532-9300707,9300779-9300842,9300938-9301056,9301176-9301265,9301342-9301456,9301557-9301745	AT2G21800.1  CDS  gene_syn ARABIDOPSIS ESSENTIAL MEIOTIC ENDONUCLEASE 1A, ATEME1A, EME1A, F7D8.12, F7D8_12  gene ATEME1A  function Forms a complex with MUS81 that functions as endonuclease in DNA recombination and repair processes.  go_process DNA repair|GO:0006281|19339504|IDA  go_process DNA recombination|GO:0006310|19339504|IDA  go_function endonuclease activity|GO:0004519|19339504|IDA  product ATEME1A (ARABIDOPSIS ESSENTIAL MEIOTIC ENDONUCLEASE 1A); endonuclease  note ARABIDOPSIS ESSENTIAL MEIOTIC ENDONUCLEASE 1A (ATEME1A); FUNCTIONS IN: endonuclease activity; INVOLVED IN: DNA repair, DNA recombination; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DNA repair nuclease, XPF-type/Helicase (InterPro:IPR006166); BEST Arabidopsis thaliana protein match is: ATEME1B (ARABIDOPSIS ESSENTIAL MEIOTIC ENDONUCLEASE 1B); endonuclease (TAIR:AT2G22140.1); Has 2218 Blast hits to 1673 proteins in 203 species: Archae - 0; Bacteria - 94; Metazoa - 752; Fungi - 358; Plants - 121; Viruses - 21; Other Eukaryotes - 872 (source: NCBI BLink).  protein_id AT2G21800.1p  transcript_id AT2G21800.1  protein_id AT2G21800.1p  transcript_id AT2G21800.1  
At2g21810	chr2:009302254	0.0	W/9302254-9302640	AT2G21810.1  CDS  gene_syn F7D8.13, F7D8_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product CHP-rich zinc finger protein, putative  note CHP-rich zinc finger protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT2G21830.1); Has 373 Blast hits to 265 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 371; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G21810.1p  transcript_id AT2G21810.1  protein_id AT2G21810.1p  transcript_id AT2G21810.1  
At2g21820	chr2:009302983	0.0	C/9302983-9303219	AT2G21820.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, root, carpel, stamen, leaf; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible; Has 23 Blast hits to 23 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G21820.1p  transcript_id AT2G21820.1  protein_id AT2G21820.1p  transcript_id AT2G21820.1  
At2g21830	chr2:009303821	0.0	W/9303821-9304873,9304951-9305049,9305143-9305700	AT2G21830.1  CDS  gene_syn F7D8.15, F7D8_15  go_process intracellular signaling cascade|GO:0007242||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular signaling cascade; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT2G21850.1); Has 1741 Blast hits to 575 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 78; Fungi - 0; Plants - 1624; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT2G21830.1p  transcript_id AT2G21830.1  protein_id AT2G21830.1p  transcript_id AT2G21830.1  
At2g21840	chr2:009308981	0.0	C/9308981-9310042,9308776-9308877,9307677-9308699,9307513-9307597,9307388-9307425	AT2G21840.1  CDS  gene_syn F7D8.16, F7D8_16  go_process intracellular signaling cascade|GO:0007242||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular signaling cascade; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT2G21850.1); Has 2278 Blast hits to 530 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 22; Fungi - 0; Plants - 2227; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT2G21840.1p  transcript_id AT2G21840.1  protein_id AT2G21840.1p  transcript_id AT2G21840.1  
At2g21850	chr2:009315268	0.0	W/9315268-9316308,9316381-9316491,9316596-9317720,9317822-9317908	AT2G21850.1  CDS  gene_syn F7D8.17, F7D8_17  go_process intracellular signaling cascade|GO:0007242||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular signaling cascade; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, hypocotyl, root; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT2G21840.1); Has 2599 Blast hits to 580 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 96; Fungi - 2; Plants - 2449; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT2G21850.1p  transcript_id AT2G21850.1  protein_id AT2G21850.1p  transcript_id AT2G21850.1  
At2g21860	chr2:009319697	0.0	C/9319697-9319990,9318333-9319607	AT2G21860.1  CDS  gene_syn F7D8.18, F7D8_18  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product violaxanthin de-epoxidase-related  note violaxanthin de-epoxidase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: NPQ1 (NON-PHOTOCHEMICAL QUENCHING 1); violaxanthin de-epoxidase (TAIR:AT1G08550.2); Has 96 Blast hits to 96 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G21860.1p  transcript_id AT2G21860.1  protein_id AT2G21860.1p  transcript_id AT2G21860.1  
At2g21870	chr2:009322580	0.0	C/9322580-9322618,9322109-9322202,9321576-9321720,9321274-9321384,9320868-9321014,9320612-9320738	AT2G21870.2  CDS  gene_syn F7D8.19, F7D8_19  go_component nucleolus|GO:0005730|15496452|IDA  go_component mitochondrion|GO:0005739|15276431|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|12681508|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, nucleolus, chloroplast, plastid, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; Has 34 Blast hits to 34 proteins in 15 species: Archae - 2; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G21870.2p  transcript_id AT2G21870.2  protein_id AT2G21870.2p  transcript_id AT2G21870.2  
At2g21870	chr2:009322580	0.0	C/9322580-9322618,9322109-9322202,9321576-9321720,9321274-9321384,9320868-9321014,9320616-9320738,9320456-9320519	AT2G21870.1  CDS  gene_syn F7D8.19, F7D8_19  go_component nucleolus|GO:0005730|15496452|IDA  go_component mitochondrion|GO:0005739|15276431|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|12681508|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, nucleolus, chloroplast, plastid, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; Has 84 Blast hits to 83 proteins in 36 species: Archae - 2; Bacteria - 11; Metazoa - 21; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT2G21870.1p  transcript_id AT2G21870.1  protein_id AT2G21870.1p  transcript_id AT2G21870.1  
At2g21880	chr2:009326115	0.0	C/9326115-9326170,9325915-9325941,9325685-9325784,9325456-9325578,9325285-9325365,9325057-9325208,9324899-9324974	AT2G21880.2  CDS  gene_syn ARABIDOPSIS RAB GTPASE HOMOLOG G2, ATRAB7A, ATRABG2, F7D8.20, F7D8_20  gene ATRAB7A  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product ATRAB7A; GTP binding  note ATRAB7A; FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: Ras-related GTP-binding protein, putative (TAIR:AT4G09720.1); Has 17576 Blast hits to 17551 proteins in 492 species: Archae - 4; Bacteria - 56; Metazoa - 9652; Fungi - 1828; Plants - 1686; Viruses - 19; Other Eukaryotes - 4331 (source: NCBI BLink).  protein_id AT2G21880.2p  transcript_id AT2G21880.2  protein_id AT2G21880.2p  transcript_id AT2G21880.2  
At2g21880	chr2:009326115	0.0	C/9326115-9326170,9325915-9325941,9325685-9325784,9325456-9325602,9325285-9325365,9325057-9325208,9324899-9324974	AT2G21880.1  CDS  gene_syn ARABIDOPSIS RAB GTPASE HOMOLOG G2, ATRAB7A, ATRABG2, F7D8.20, F7D8_20  gene ATRAB7A  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product ATRAB7A; GTP binding  note ATRAB7A; FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: Ras-related GTP-binding protein, putative (TAIR:AT4G09720.1); Has 21327 Blast hits to 21297 proteins in 593 species: Archae - 16; Bacteria - 90; Metazoa - 11797; Fungi - 2777; Plants - 1781; Viruses - 19; Other Eukaryotes - 4847 (source: NCBI BLink).  protein_id AT2G21880.1p  transcript_id AT2G21880.1  protein_id AT2G21880.1p  transcript_id AT2G21880.1  
At2g21890	chr2:009331089	0.0	W/9331089-9331168,9331265-9331378,9331617-9332287,9332384-9332646	AT2G21890.1  CDS  gene_syn ATCAD3, CAD3, CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 3, F7D8.21, F7D8_21  gene CAD3  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product CAD3 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 3); binding / catalytic/ oxidoreductase/ zinc ion binding  note CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 3 (CAD3); FUNCTIONS IN: oxidoreductase activity, binding, zinc ion binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2); binding / catalytic/ oxidoreductase/ zinc ion binding (TAIR:AT2G21730.1); Has 24145 Blast hits to 24134 proteins in 1837 species: Archae - 392; Bacteria - 13932; Metazoa - 1250; Fungi - 1844; Plants - 2039; Viruses - 3; Other Eukaryotes - 4685 (source: NCBI BLink).  protein_id AT2G21890.1p  transcript_id AT2G21890.1  protein_id AT2G21890.1p  transcript_id AT2G21890.1  
At2g21895	chr2:009333002	0.0	C/9333002-9333336	AT2G21895.1  pseudogenic_transcript  pseudo  function Encodes a ECA1 gametogenesis related family protein [pseudogene]  
At2g21900	chr2:009335999	0.0	C/9335999-9336222,9335736-9335897,9334149-9334371	AT2G21900.1  CDS  gene_syn ATWRKY59, F7D8.22, F7D8_22, WRKY DNA-BINDING PROTEIN 59, WRKY59  gene WRKY59  function member of WRKY Transcription Factor; Group II-c  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY59; transcription factor  note WRKY59; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY71; transcription factor (TAIR:AT1G29860.1); Has 1940 Blast hits to 1652 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1928; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT2G21900.1p  transcript_id AT2G21900.1  protein_id AT2G21900.1p  transcript_id AT2G21900.1  
At2g21905	chr2:009339167	0.0	W/9339167-9339477	AT2G21905.1  pseudogenic_transcript  pseudo  function Encodes a ECA1 gametogenesis related family protein [pseudogene]  
At2g21910	chr2:009341498	0.0	W/9341498-9343030	AT2G21910.1  CDS  gene_syn CYP96A5, CYTOCHROME P450, FAMILY 96, SUBFAMILY A, POLYPEPTIDE 5, F7D8.23, F7D8_23  gene CYP96A5  function member of CYP96A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP96A5; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP96A5; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP96A2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G32170.1); Has 19735 Blast hits to 19685 proteins in 1050 species: Archae - 19; Bacteria - 1382; Metazoa - 9201; Fungi - 3696; Plants - 4729; Viruses - 3; Other Eukaryotes - 705 (source: NCBI BLink).  protein_id AT2G21910.1p  transcript_id AT2G21910.1  protein_id AT2G21910.1p  transcript_id AT2G21910.1  
At2g21920	chr2:009346914	0.0	C/9346914-9347159,9346045-9346143,9344847-9344880,9344243-9344304,9343410-9343805	AT2G21920.1  CDS  gene_syn F7D8.24, F7D8_24  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: F-box associated type 3 (InterPro:IPR013187); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43171.1); Has 93 Blast hits to 93 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G21920.1p  transcript_id AT2G21920.1  protein_id AT2G21920.1p  transcript_id AT2G21920.1  
At2g21930	chr2:009347947	0.0	C/9347947-9348954	AT2G21930.1  CDS  gene_syn F7D8.25, F7D8_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G38870.1); Has 659 Blast hits to 652 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 659; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G21930.1p  transcript_id AT2G21930.1  protein_id AT2G21930.1p  transcript_id AT2G21930.1  
At2g21940	chr2:009351106	0.0	W/9351106-9351325,9351415-9351464,9351552-9351606,9351692-9351764,9351903-9351990,9352093-9352175,9352263-9352392,9352491-9352569,9352669-9352733,9352813-9352881	AT2G21940.1  CDS  gene_syn F7D8.26, F7D8_26  go_function shikimate kinase activity|GO:0004765||IEA  go_function ATP binding|GO:0005524||IEA  product shikimate kinase, putative  note shikimate kinase, putative; FUNCTIONS IN: shikimate kinase activity, ATP binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Shikimate kinase (InterPro:IPR000623); BEST Arabidopsis thaliana protein match is: shikimate kinase family protein (TAIR:AT4G39540.2); Has 5136 Blast hits to 5136 proteins in 1299 species: Archae - 22; Bacteria - 2920; Metazoa - 36; Fungi - 94; Plants - 88; Viruses - 0; Other Eukaryotes - 1976 (source: NCBI BLink).  protein_id AT2G21940.1p  transcript_id AT2G21940.1  protein_id AT2G21940.1p  transcript_id AT2G21940.1  
At2g21940	chr2:009351106	0.0	W/9351106-9351325,9351415-9351464,9351552-9351606,9351692-9351764,9351903-9351990,9352093-9352175,9352263-9352392,9352491-9352569,9352669-9352733,9352813-9352881	AT2G21940.2  CDS  gene_syn F7D8.26, F7D8_26  go_function shikimate kinase activity|GO:0004765||IEA  go_function ATP binding|GO:0005524||IEA  product shikimate kinase, putative  note shikimate kinase, putative; FUNCTIONS IN: shikimate kinase activity, ATP binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Shikimate kinase (InterPro:IPR000623); BEST Arabidopsis thaliana protein match is: shikimate kinase family protein (TAIR:AT4G39540.2); Has 5136 Blast hits to 5136 proteins in 1299 species: Archae - 22; Bacteria - 2920; Metazoa - 36; Fungi - 94; Plants - 88; Viruses - 0; Other Eukaryotes - 1976 (source: NCBI BLink).  protein_id AT2G21940.2p  transcript_id AT2G21940.2  protein_id AT2G21940.2p  transcript_id AT2G21940.2  
At2g21940	chr2:009351106	0.0	W/9351106-9351325,9351415-9351464,9351552-9351606,9351692-9351764,9351903-9351990,9352093-9352175,9352263-9352392,9352491-9352569,9352669-9352733,9352813-9352881	AT2G21940.5  CDS  gene_syn F7D8.26, F7D8_26  go_function shikimate kinase activity|GO:0004765||IEA  go_function ATP binding|GO:0005524||IEA  product shikimate kinase, putative  note shikimate kinase, putative; FUNCTIONS IN: shikimate kinase activity, ATP binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Shikimate kinase (InterPro:IPR000623); BEST Arabidopsis thaliana protein match is: shikimate kinase family protein (TAIR:AT4G39540.2); Has 5136 Blast hits to 5136 proteins in 1299 species: Archae - 22; Bacteria - 2920; Metazoa - 36; Fungi - 94; Plants - 88; Viruses - 0; Other Eukaryotes - 1976 (source: NCBI BLink).  protein_id AT2G21940.5p  transcript_id AT2G21940.5  protein_id AT2G21940.5p  transcript_id AT2G21940.5  
At2g21940	chr2:009351106	0.0	W/9351106-9351325,9351415-9351464,9351552-9351606,9351692-9351764,9351903-9351990,9352093-9352175,9352263-9352392,9352491-9352622	AT2G21940.3  CDS  gene_syn F7D8.26, F7D8_26  go_function shikimate kinase activity|GO:0004765||IEA  go_function ATP binding|GO:0005524||IEA  product shikimate kinase, putative  note shikimate kinase, putative; FUNCTIONS IN: shikimate kinase activity, ATP binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Shikimate kinase (InterPro:IPR000623); BEST Arabidopsis thaliana protein match is: shikimate kinase family protein (TAIR:AT4G39540.2); Has 5148 Blast hits to 5148 proteins in 1299 species: Archae - 22; Bacteria - 2920; Metazoa - 36; Fungi - 93; Plants - 88; Viruses - 0; Other Eukaryotes - 1989 (source: NCBI BLink).  protein_id AT2G21940.3p  transcript_id AT2G21940.3  protein_id AT2G21940.3p  transcript_id AT2G21940.3  
At2g21940	chr2:009351106	0.0	W/9351106-9351328,9351415-9351464,9351552-9351606,9351692-9351764,9351903-9351990,9352093-9352175,9352263-9352392,9352491-9352569,9352669-9352733,9352813-9352881	AT2G21940.4  CDS  gene_syn F7D8.26, F7D8_26  go_function shikimate kinase activity|GO:0004765||IEA  go_function ATP binding|GO:0005524||IEA  product shikimate kinase, putative  note shikimate kinase, putative; FUNCTIONS IN: shikimate kinase activity, ATP binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Shikimate kinase (InterPro:IPR000623); BEST Arabidopsis thaliana protein match is: shikimate kinase family protein (TAIR:AT4G39540.2); Has 5136 Blast hits to 5136 proteins in 1299 species: Archae - 22; Bacteria - 2920; Metazoa - 36; Fungi - 94; Plants - 88; Viruses - 0; Other Eukaryotes - 1976 (source: NCBI BLink).  protein_id AT2G21940.4p  transcript_id AT2G21940.4  protein_id AT2G21940.4p  transcript_id AT2G21940.4  
At2g21950	chr2:009353526	0.0	C/9353526-9354644	AT2G21950.1  CDS  gene_syn F7D8.27, F7D8_27, SKIP6, SKP1 interacting partner 6  gene SKIP6  function Encodes an SKP1 interacting partner (SKIP6).  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product SKIP6 (SKP1 interacting partner 6); ubiquitin-protein ligase  note SKP1 interacting partner 6 (SKIP6); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G39550.1); Has 4212 Blast hits to 3101 proteins in 168 species: Archae - 10; Bacteria - 144; Metazoa - 3068; Fungi - 16; Plants - 760; Viruses - 60; Other Eukaryotes - 154 (source: NCBI BLink).  protein_id AT2G21950.1p  transcript_id AT2G21950.1  protein_id AT2G21950.1p  transcript_id AT2G21950.1  
At2g21960	chr2:009354990	0.0	W/9354990-9355175,9355274-9355369,9355482-9355556,9355668-9355736,9355979-9356055,9356143-9356231,9356309-9356438,9356516-9356606,9356699-9356764,9356839-9356958	AT2G21960.1  CDS  gene_syn F7D8.28, F7D8_28  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56180.1); Has 140 Blast hits to 140 proteins in 40 species: Archae - 0; Bacteria - 50; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT2G21960.1p  transcript_id AT2G21960.1  protein_id AT2G21960.1p  transcript_id AT2G21960.1  
At2g21970	chr2:009357536	0.0	C/9357536-9357874,9357188-9357457	AT2G21970.1  CDS  gene_syn F7D8.29, F7D8_29, SEP2, STRESS ENHANCED PROTEIN 2  gene SEP2  function stress enhanced protein 2 (SEP2) chlorophyll a/b-binding protein  go_component chloroplast thylakoid membrane|GO:0009535|10725357|IDA  go_process photosynthesis, light harvesting|GO:0009765|10725357|ISS  go_function chlorophyll binding|GO:0016168|10725357|ISS  product SEP2 (STRESS ENHANCED PROTEIN 2); chlorophyll binding  note STRESS ENHANCED PROTEIN 2 (SEP2); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 15 Blast hits to 15 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G21970.1p  transcript_id AT2G21970.1  protein_id AT2G21970.1p  transcript_id AT2G21970.1  
At2g21980	chr2:009358882	0.0	C/9358882-9359061	AT2G21980.1  CDS  gene_syn F7D8.30, F7D8_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41350.2); Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G21980.1p  transcript_id AT2G21980.1  protein_id AT2G21980.1p  transcript_id AT2G21980.1  
At2g21990	chr2:009359573	0.0	C/9359573-9360331	AT2G21990.1  CDS  gene_syn F7D8.31, F7D8_31  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, sepal, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF617, plant (InterPro:IPR006460); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G39610.1); Has 135 Blast hits to 135 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G21990.1p  transcript_id AT2G21990.1  protein_id AT2G21990.1p  transcript_id AT2G21990.1  
At2g22000	chr2:009362408	0.0	W/9362408-9362623,9362904-9363002	AT2G22000.1  CDS  gene_syn Elicitor peptide 6 precursor, F7D8.32, F7D8_32, PROPEP6  gene PROPEP6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product PROPEP6 (Elicitor peptide 6 precursor)  note Elicitor peptide 6 precursor (PROPEP6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 10 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G22000.1p  transcript_id AT2G22000.1  protein_id AT2G22000.1p  transcript_id AT2G22000.1  
At2g22010	chr2:009367344	0.0	C/9367344-9368828,9366426-9367232,9366153-9366313,9365884-9366022,9365630-9365713,9365239-9365520,9365029-9365160,9364666-9364865,9364368-9364572,9363946-9364293	AT2G22010.1  CDS  gene_syn AT2G22020, F7D8.33, F7D8_33, RKP, Related to KPC1  gene RKP  function Encodes a protein predicted to act as a RING E3 ubiquitin ligase. It appears to regulate the stability of the KRP1/ICK1 cyclin dependent kinase inhibitor. Induced by beet severe curly virus (BSCTV) C4 protein.  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process response to virus|GO:0009615|19000158|IEP  go_process proteolysis involved in cellular protein catabolic process|GO:0051603|18005227|IMP  go_process regulation of cell cycle|GO:0051726|19000158|IMP  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product RKP (Related to KPC1); protein binding / zinc ion binding  note Related to KPC1 (RKP); FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: regulation of cell cycle, response to virus, proteolysis involved in cellular protein catabolic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), SPla/RYanodine receptor subgroup (InterPro:IPR018355), B302 (SPRY)-like (InterPro:IPR001870), SPla/RYanodine receptor SPRY (InterPro:IPR003877); Has 1351 Blast hits to 1216 proteins in 135 species: Archae - 0; Bacteria - 5; Metazoa - 961; Fungi - 61; Plants - 67; Viruses - 0; Other Eukaryotes - 257 (source: NCBI BLink).  protein_id AT2G22010.1p  transcript_id AT2G22010.1  protein_id AT2G22010.1p  transcript_id AT2G22010.1  
At2g22030	chr2:009372530	0.0	W/9372530-9373681	AT2G22030.1  CDS  gene_syn T16B14.12, T16B14_12  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: leaf whorl, sepal; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT2G44630.1); Has 1049 Blast hits to 1015 proteins in 97 species: Archae - 4; Bacteria - 22; Metazoa - 314; Fungi - 0; Plants - 568; Viruses - 126; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT2G22030.1p  transcript_id AT2G22030.1  protein_id AT2G22030.1p  transcript_id AT2G22030.1  
At2g22040	chr2:009376138	0.0	C/9376138-9376260,9375944-9376048,9375736-9375848,9375579-9375648,9375435-9375512,9375240-9375356,9375064-9375146,9374898-9374977,9374766-9374825,9374576-9374685	AT2G22040.1  CDS  gene_syn T16B14.11, T16B14_11  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G18140.1); Has 52523 Blast hits to 20843 proteins in 591 species: Archae - 56; Bacteria - 6348; Metazoa - 25057; Fungi - 9979; Plants - 4252; Viruses - 0; Other Eukaryotes - 6831 (source: NCBI BLink).  protein_id AT2G22040.1p  transcript_id AT2G22040.1  protein_id AT2G22040.1p  transcript_id AT2G22040.1  
At2g22050	chr2:009376684	0.0	W/9376684-9377443,9377533-9377552	AT2G22050.1  CDS  gene_syn T16B14.10, T16B14_10  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Kelch repeat type 1 (InterPro:IPR006652), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch related (InterPro:IPR013089), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41360.1); Has 669 Blast hits to 647 proteins in 61 species: Archae - 6; Bacteria - 46; Metazoa - 97; Fungi - 3; Plants - 506; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT2G22050.1p  transcript_id AT2G22050.1  protein_id AT2G22050.1p  transcript_id AT2G22050.1  
At2g22050	chr2:009376684	0.0	W/9376684-9377443,9377536-9377552	AT2G22050.2  CDS  gene_syn T16B14.10, T16B14_10  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41360.1); Has 61 Blast hits to 60 proteins in 11 species: Archae - 0; Bacteria - 3; Metazoa - 45; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G22050.2p  transcript_id AT2G22050.2  protein_id AT2G22050.2p  transcript_id AT2G22050.2  
At2g22055	chr2:009379578	0.0	W/9379578-9379817	AT2G22055.1  CDS  gene_syn RALF-LIKE 15, RALFL15  gene RALFL15  function Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. This gene is contained within a highly AT-rich repetitive sequence region.  go_component apoplast|GO:0048046|12611624|ISS  go_process cell-cell signaling|GO:0007267|12611624|ISS  go_function signal transducer activity|GO:0004871|12611624|TAS  product RALFL15 (RALF-LIKE 15); signal transducer  note RALF-LIKE 15 (RALFL15); FUNCTIONS IN: signal transducer activity; INVOLVED IN: cell-cell signaling; LOCATED IN: apoplast; CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALFL8 (ralf-like 8); signal transducer (TAIR:AT1G61563.1); Has 16 Blast hits to 16 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G22055.1p  transcript_id AT2G22055.1  protein_id AT2G22055.1p  transcript_id AT2G22055.1  
At2g22060	chr2:009381616	0.0	W/9381616-9382056	AT2G22060.1  CDS  gene_syn T16B14.9, T16B14_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT2G22030.1); Has 91 Blast hits to 91 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G22060.1p  transcript_id AT2G22060.1  protein_id AT2G22060.1p  transcript_id AT2G22060.1  
At2g22070	chr2:009383602	0.0	W/9383602-9385962	AT2G22070.1  CDS  gene_syn T16B14.8, T16B14_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, embryo; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G25360.1); Has 16760 Blast hits to 5284 proteins in 183 species: Archae - 0; Bacteria - 10; Metazoa - 93; Fungi - 64; Plants - 16211; Viruses - 0; Other Eukaryotes - 382 (source: NCBI BLink).  protein_id AT2G22070.1p  transcript_id AT2G22070.1  protein_id AT2G22070.1p  transcript_id AT2G22070.1  
At2g22080	chr2:009386965	0.0	W/9386965-9387093,9387593-9387997	AT2G22080.1  CDS  gene_syn T16B14.7, T16B14_7  go_component nucleus|GO:0005634|18614705|IMP  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 90945 Blast hits to 30236 proteins in 1203 species: Archae - 328; Bacteria - 24809; Metazoa - 25886; Fungi - 10609; Plants - 3551; Viruses - 1562; Other Eukaryotes - 24200 (source: NCBI BLink).  protein_id AT2G22080.1p  transcript_id AT2G22080.1  protein_id AT2G22080.1p  transcript_id AT2G22080.1  
At2g22088	chr2:009388384	0.0	W/9388384-9388540,9388802-9389049	AT2G22088.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT2G22088.1p  transcript_id AT2G22088.1  protein_id AT2G22088.1p  transcript_id AT2G22088.1  
At2g22090	chr2:009389407	0.0	C/9389407-9390450	AT2G22090.2  CDS  gene_syn T16B14.6, T16B14_6, UBA1A  gene UBA1A  function encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. As with UBP1, transient overexpression of UBA1a in protoplasts increases the steady-state levels of reporter mRNAs in a promoter-dependent manner. Along with UBP1 and UBA2a, it may act as a component of a complex recognizing U-rich sequences in plant 3 -UTRs and contributing to the stabilization of mRNAs in the nucleus.  go_component nucleus|GO:0005634|12024044|IDA  go_process mRNA stabilization|GO:0048255|12024044|NAS  go_function RNA binding|GO:0003723||ISS  go_function AU-rich element binding|GO:0017091|12024044|IDA  product UBP1 interacting protein 1a (UBA1a)  note UBA1A; FUNCTIONS IN: RNA binding, AU-rich element binding; INVOLVED IN: mRNA stabilization; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT2G19380.1); Has 10602 Blast hits to 8807 proteins in 505 species: Archae - 0; Bacteria - 542; Metazoa - 6516; Fungi - 915; Plants - 1732; Viruses - 0; Other Eukaryotes - 897 (source: NCBI BLink).  protein_id AT2G22090.2p  transcript_id AT2G22090.2  protein_id AT2G22090.2p  transcript_id AT2G22090.2  
At2g22090	chr2:009389420	0.0	C/9389420-9390450,9388571-9388571	AT2G22090.1  CDS  gene_syn T16B14.6, T16B14_6, UBA1A  gene UBA1A  function encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. As with UBP1, transient overexpression of UBA1a in protoplasts increases the steady-state levels of reporter mRNAs in a promoter-dependent manner. Along with UBP1 and UBA2a, it may act as a component of a complex recognizing U-rich sequences in plant 3 -UTRs and contributing to the stabilization of mRNAs in the nucleus.  go_component nucleus|GO:0005634|12024044|IDA  go_process mRNA stabilization|GO:0048255|12024044|NAS  go_function RNA binding|GO:0003723||ISS  go_function AU-rich element binding|GO:0017091|12024044|IDA  product UBP1 interacting protein 1a (UBA1a)  note UBA1A; FUNCTIONS IN: RNA binding, AU-rich element binding; INVOLVED IN: mRNA stabilization; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT2G19380.1); Has 10598 Blast hits to 8804 proteins in 504 species: Archae - 0; Bacteria - 542; Metazoa - 6514; Fungi - 913; Plants - 1732; Viruses - 0; Other Eukaryotes - 897 (source: NCBI BLink).  protein_id AT2G22090.1p  transcript_id AT2G22090.1  protein_id AT2G22090.1p  transcript_id AT2G22090.1  
At2g22100	chr2:009392397	0.0	C/9392397-9393545	AT2G22100.1  CDS  gene_syn T16B14.5, T16B14_5  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT2G19380.1); Has 51803 Blast hits to 27594 proteins in 1051 species: Archae - 78; Bacteria - 2768; Metazoa - 24658; Fungi - 5025; Plants - 3290; Viruses - 216; Other Eukaryotes - 15768 (source: NCBI BLink).  protein_id AT2G22100.1p  transcript_id AT2G22100.1  protein_id AT2G22100.1p  transcript_id AT2G22100.1  
At2g22110	chr2:009393670	0.0	W/9393670-9393743	AT2G22110.1  tRNA  gene_syn 51179.TRNA-VAL-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Val (anticodon: CAC)  transcript_id AT2G22110.1  
At2g22120	chr2:009394026	0.0	W/9394026-9394152,9394448-9394533,9394912-9395058,9395164-9395272,9395772-9395895,9396304-9396577,9396661-9396768	AT2G22120.1  CDS  gene_syn T16B14.3, T16B14_3  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G11020.1); Has 1022 Blast hits to 1003 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 474; Fungi - 121; Plants - 181; Viruses - 28; Other Eukaryotes - 218 (source: NCBI BLink).  protein_id AT2G22120.1p  transcript_id AT2G22120.1  protein_id AT2G22120.1p  transcript_id AT2G22120.1  
At2g22121	chr2:009397864	0.0	W/9397864-9397915,9398075-9398259	AT2G22121.1  CDS  gene_syn LCR35, Low-molecular-weight cysteine-rich 35  gene LCR35  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR35 (Low-molecular-weight cysteine-rich 35)  note Low-molecular-weight cysteine-rich 35 (LCR35); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: LCR23 (Low-molecular-weight cysteine-rich 23) (TAIR:AT4G29273.1); Has 31 Blast hits to 31 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G22121.1p  transcript_id AT2G22121.1  protein_id AT2G22121.1p  transcript_id AT2G22121.1  
At2g22122	chr2:009403362	0.0	W/9403362-9403544	AT2G22122.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G22122.1p  transcript_id AT2G22122.1  protein_id AT2G22122.1p  transcript_id AT2G22122.1  
At2g22125	chr2:009406793	0.0	W/9406793-9406858,9407180-9407253,9407473-9410530,9410702-9413246,9413340-9413794,9413880-9413996,9414086-9414223	AT2G22125.1  CDS  gene_syn T16B14.2  go_component plasma membrane|GO:0005886|17644812|IDA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Armadillo (InterPro:IPR000225), C2 membrane targeting protein (InterPro:IPR018029), Armadillo-type fold (InterPro:IPR016024), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT1G77460.1); Has 4878 Blast hits to 2097 proteins in 211 species: Archae - 4; Bacteria - 40; Metazoa - 1542; Fungi - 619; Plants - 2223; Viruses - 0; Other Eukaryotes - 450 (source: NCBI BLink).  protein_id AT2G22125.1p  transcript_id AT2G22125.1  protein_id AT2G22125.1p  transcript_id AT2G22125.1  
At2g22140	chr2:009418329	0.0	C/9418329-9418584,9417976-9418143,9417805-9417869,9417414-9417578,9417191-9417341,9416938-9417047,9416256-9416431,9416129-9416183,9415905-9416023,9415404-9415493,9415203-9415317,9414895-9415080	AT2G22140.1  CDS  gene_syn ARABIDOPSIS ESSENTIAL MEIOTIC ENDONUCLEASE 1B, ATEME1B, EME1B, T26C19.20, T26C19_20  gene ATEME1B  function Forms a complex with MUS81 that functions as endonuclease in DNA recombination and repair processes.  go_component cellular_component|GO:0005575||ND  go_process DNA repair|GO:0006281|19339504|IDA  go_process DNA recombination|GO:0006310|19339504|IDA  go_function endonuclease activity|GO:0004519|19339504|IDA  product ATEME1B (ARABIDOPSIS ESSENTIAL MEIOTIC ENDONUCLEASE 1B); endonuclease  note ARABIDOPSIS ESSENTIAL MEIOTIC ENDONUCLEASE 1B (ATEME1B); FUNCTIONS IN: endonuclease activity; INVOLVED IN: DNA repair, DNA recombination; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DNA repair nuclease, XPF-type/Helicase (InterPro:IPR006166); BEST Arabidopsis thaliana protein match is: ATEME1A (ARABIDOPSIS ESSENTIAL MEIOTIC ENDONUCLEASE 1A); endonuclease (TAIR:AT2G21800.1); Has 1221 Blast hits to 983 proteins in 158 species: Archae - 3; Bacteria - 67; Metazoa - 344; Fungi - 191; Plants - 55; Viruses - 0; Other Eukaryotes - 561 (source: NCBI BLink).  protein_id AT2G22140.1p  transcript_id AT2G22140.1  protein_id AT2G22140.1p  transcript_id AT2G22140.1  
At2g22145	chr2:009420320	0.0	W/9420320-9420589	AT2G22145.1  CDS  function Encodes a ECA1 gametogenesis related family protein  product unknown protein  note BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G22155.1); Has 20 Blast hits to 19 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G22145.1p  transcript_id AT2G22145.1  protein_id AT2G22145.1p  transcript_id AT2G22145.1  
At2g22150	chr2:009421683	0.0	C/9421683-9422858	AT2G22150.1  pseudogenic_transcript  pseudo  gene_syn T26C19.19, T26C19_19  note pseudogene, hypothetical protein  
At2g22155	chr2:009423869	0.0	W/9423869-9424174	AT2G22155.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G22145.1); Has 23 Blast hits to 22 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G22155.1p  transcript_id AT2G22155.1  protein_id AT2G22155.1p  transcript_id AT2G22155.1  
At2g22160	chr2:009425143	0.0	C/9425143-9425460	AT2G22160.1  CDS  gene_syn T26C19.18, T26C19_18  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_component cellular_component|GO:0005575||ND  product cysteine endopeptidase-related  note cysteine endopeptidase-related; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain (InterPro:IPR013128), Peptidase C1A, papain C-terminal (InterPro:IPR000668); BEST Arabidopsis thaliana protein match is: cysteine proteinase, putative (TAIR:AT3G48350.1); Has 1354 Blast hits to 1352 proteins in 259 species: Archae - 0; Bacteria - 0; Metazoa - 492; Fungi - 0; Plants - 634; Viruses - 30; Other Eukaryotes - 198 (source: NCBI BLink).  protein_id AT2G22160.1p  transcript_id AT2G22160.1  protein_id AT2G22160.1p  transcript_id AT2G22160.1  
At2g22170	chr2:009427668	0.0	C/9427668-9427742,9427010-9427486	AT2G22170.1  CDS  gene_syn T26C19.17, T26C19_17  go_component chloroplast|GO:0009507|15028209|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product lipid-associated family protein  note lipid-associated family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976); BEST Arabidopsis thaliana protein match is: lipid-associated family protein (TAIR:AT4G39730.1); Has 113 Blast hits to 108 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G22170.1p  transcript_id AT2G22170.1  protein_id AT2G22170.1p  transcript_id AT2G22170.1  
At2g22180	chr2:009428969	0.0	W/9428969-9429844	AT2G22180.1  CDS  gene_syn T26C19.16, T26C19_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT4G39745.1); Has 121 Blast hits to 120 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 10; Fungi - 4; Plants - 99; Viruses - 2; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G22180.1p  transcript_id AT2G22180.1  protein_id AT2G22180.1p  transcript_id AT2G22180.1  
At2g22190	chr2:009436479	0.0	C/9436479-9436482,9436137-9436363,9435910-9436050,9435478-9435549,9435289-9435381,9435120-9435176,9434886-9434987,9434714-9434791,9434537-9434606,9434305-9434375,9434102-9434194,9433897-9433953	AT2G22190.1  CDS  gene_syn T26C19.15, T26C19_15  go_process trehalose biosynthetic process|GO:0005992||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process trehalose biosynthetic process|GO:0005992||ISS  go_function trehalose-phosphatase activity|GO:0004805||ISS  product catalytic/ trehalose-phosphatase  note catalytic/ trehalose-phosphatase; FUNCTIONS IN: catalytic activity, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: trehalose-6-phosphate phosphatase, putative (TAIR:AT4G39770.1); Has 1471 Blast hits to 1467 proteins in 515 species: Archae - 29; Bacteria - 759; Metazoa - 195; Fungi - 105; Plants - 269; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).  protein_id AT2G22190.1p  transcript_id AT2G22190.1  protein_id AT2G22190.1p  transcript_id AT2G22190.1  
At2g22200	chr2:009443422	0.0	C/9443422-9444207	AT2G22200.1  CDS  gene_syn T26C19.14, T26C19_14  function encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634|9192694|IC  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9192694|ISS  product AP2 domain-containing transcription factor  note AP2 domain-containing transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT4G39780.1); Has 3672 Blast hits to 3647 proteins in 196 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 3649; Viruses - 3; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT2G22200.1p  transcript_id AT2G22200.1  protein_id AT2G22200.1p  transcript_id AT2G22200.1  
At2g22201	chr2:009444537	0.0	W/9444537-9444719	AT2G22201.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G22201.1p  transcript_id AT2G22201.1  protein_id AT2G22201.1p  transcript_id AT2G22201.1  
At2g22210	chr2:009446289	0.0	W/9446289-9449356	AT2G22210.1  mRNA_TE_gene  pseudo  gene_syn T26C19.13  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.1e-19 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At2g22220	chr2:009449809	0.0	C/9449809-9449882	AT2G22220.1  tRNA  gene_syn 51147.TRNA-ILE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ile (anticodon: AAT)  transcript_id AT2G22220.1  
At2g22230	chr2:009450042	0.0	W/9450042-9450243,9450321-9450381,9450495-9450639,9451173-9451427	AT2G22230.1  CDS  gene_syn T26C19.11, T26C19_11  go_component cell wall|GO:0005618|16287169|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process fatty acid biosynthetic process|GO:0006633||IEA  go_process fatty acid biosynthetic process|GO:0006633||ISS  go_function 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity|GO:0019171|19101548|IDA  go_function 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity|GO:0019171||ISS  go_function 3-hydroxybutyryl-[acyl-carrier-protein] dehydratase activity|GO:0080063|19101548|IDA  product beta-hydroxyacyl-ACP dehydratase, putative  note beta-hydroxyacyl-ACP dehydratase, putative; FUNCTIONS IN: 3-hydroxybutyryl-[acyl-carrier-protein] dehydratase activity, 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: cell wall, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ (InterPro:IPR013114), Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ (InterPro:IPR010084); BEST Arabidopsis thaliana protein match is: beta-hydroxyacyl-ACP dehydratase, putative (TAIR:AT5G10160.1); Has 4906 Blast hits to 4902 proteins in 1230 species: Archae - 0; Bacteria - 2979; Metazoa - 1; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 1883 (source: NCBI BLink).  protein_id AT2G22230.1p  transcript_id AT2G22230.1  protein_id AT2G22230.1p  transcript_id AT2G22230.1  
At2g22240	chr2:009453125	0.0	C/9453125-9453375,9452716-9453058,9452454-9452630,9452166-9452354,9451901-9452083	AT2G22240.2  CDS  gene_syn ATMIPS1, ATMIPS2, MIPS1, MIPS2, MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1, MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2  gene MIPS2  function ** Referred to as MIPS1 in Mitsuhashi et al 2008. Myo-inositol-1-phosphate synthase isoform 2. Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.  go_function catalytic activity|GO:0003824||IEA  go_function inositol-3-phosphate synthase activity|GO:0004512||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process inositol biosynthetic process|GO:0006021||ISS  go_process phospholipid biosynthetic process|GO:0008654||ISS  go_process response to heat|GO:0009408|17059409|IEP  go_process response to high light intensity|GO:0009644|17059409|IEP  go_process myo-inositol hexakisphosphate biosynthetic process|GO:0010264|18643983|IMP  go_process response to hydrogen peroxide|GO:0042542|17059409|IEP  go_process defense response to bacterium|GO:0042742|18643983|IMP  go_process defense response to fungus|GO:0050832|18643983|IMP  go_process defense response to virus|GO:0051607|18643983|IMP  go_function inositol-3-phosphate synthase activity|GO:0004512||ISS  product MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2); binding / catalytic/ inositol-3-phosphate synthase  note MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2 (MIPS2); FUNCTIONS IN: binding, inositol-3-phosphate synthase activity, catalytic activity; INVOLVED IN: in 9 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Myo-inositol-1-phosphate synthase (InterPro:IPR002587), Myo-inositol-1-phosphate synthase, GAPDH-like (InterPro:IPR013021), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1); inositol-3-phosphate synthase (TAIR:AT4G39800.1); Has 841 Blast hits to 839 proteins in 293 species: Archae - 50; Bacteria - 217; Metazoa - 113; Fungi - 110; Plants - 126; Viruses - 0; Other Eukaryotes - 225 (source: NCBI BLink).  protein_id AT2G22240.2p  transcript_id AT2G22240.2  protein_id AT2G22240.2p  transcript_id AT2G22240.2  
At2g22240	chr2:009453751	0.0	C/9453751-9453938,9453581-9453649,9453125-9453508,9452716-9453058,9452454-9452630,9452166-9452354,9451901-9452083	AT2G22240.1  CDS  gene_syn ATMIPS1, ATMIPS2, MIPS1, MIPS2, MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1, MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2  gene MIPS2  function ** Referred to as MIPS1 in Mitsuhashi et al 2008. Myo-inositol-1-phosphate synthase isoform 2. Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.  go_function catalytic activity|GO:0003824||IEA  go_function inositol-3-phosphate synthase activity|GO:0004512||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process inositol biosynthetic process|GO:0006021||ISS  go_process phospholipid biosynthetic process|GO:0008654||ISS  go_process response to heat|GO:0009408|17059409|IEP  go_process response to high light intensity|GO:0009644|17059409|IEP  go_process myo-inositol hexakisphosphate biosynthetic process|GO:0010264|18643983|IMP  go_process response to hydrogen peroxide|GO:0042542|17059409|IEP  go_process defense response to bacterium|GO:0042742|18643983|IMP  go_process defense response to fungus|GO:0050832|18643983|IMP  go_process defense response to virus|GO:0051607|18643983|IMP  go_function inositol-3-phosphate synthase activity|GO:0004512||ISS  product MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2); binding / catalytic/ inositol-3-phosphate synthase  note MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2 (MIPS2); FUNCTIONS IN: binding, catalytic activity, inositol-3-phosphate synthase activity; INVOLVED IN: in 9 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Myo-inositol-1-phosphate synthase (InterPro:IPR002587), Myo-inositol-1-phosphate synthase, GAPDH-like (InterPro:IPR013021), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1); inositol-3-phosphate synthase (TAIR:AT4G39800.1); Has 853 Blast hits to 849 proteins in 293 species: Archae - 50; Bacteria - 217; Metazoa - 114; Fungi - 110; Plants - 127; Viruses - 0; Other Eukaryotes - 235 (source: NCBI BLink).  protein_id AT2G22240.1p  transcript_id AT2G22240.1  protein_id AT2G22240.1p  transcript_id AT2G22240.1  
At2g22241	chr2:009454244	0.0	W/9454244-9454399	AT2G22241.1  CDS  go_component mitochondrion|GO:0005739||IEA  product unknown protein  note unknown protein; LOCATED IN: mitochondrion; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G22241.1p  transcript_id AT2G22241.1  protein_id AT2G22241.1p  transcript_id AT2G22241.1  
At2g22250	chr2:009459813	0.0	C/9459813-9460028,9459641-9459734,9459459-9459562,9459128-9459376,9458911-9459024,9458750-9458833,9458489-9458659,9458291-9458404,9458011-9458151	AT2G22250.1  CDS  gene_syn AAT, ASPARTATE AMINOTRANSFERASE, ATAAT, MATERNAL EFFECT EMBRYO ARREST 17, MEE17, T26C19.9, T26C19_9  gene AAT  go_component chloroplast|GO:0009507|18431481|IDA  go_function catalytic activity|GO:0003824||IEA  go_function transferase activity, transferring nitrogenous groups|GO:0016769||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function L-aspartate:2-oxoglutarate aminotransferase activity|GO:0004069||ISS  product aminotransferase class I and II family protein  note ASPARTATE AMINOTRANSFERASE (AAT); FUNCTIONS IN: L-aspartate:2-oxoglutarate aminotransferase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, catalytic activity; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: aminotransferase class I and II family protein (TAIR:AT1G77670.1); Has 32026 Blast hits to 32024 proteins in 1793 species: Archae - 684; Bacteria - 17910; Metazoa - 676; Fungi - 572; Plants - 943; Viruses - 0; Other Eukaryotes - 11241 (source: NCBI BLink).  protein_id AT2G22250.1p  transcript_id AT2G22250.1  protein_id AT2G22250.1p  transcript_id AT2G22250.1  
At2g22250	chr2:009460176	0.0	C/9460176-9460297,9459813-9460047,9459641-9459734,9459459-9459562,9459128-9459376,9458911-9459024,9458750-9458833,9458489-9458659,9458291-9458404,9458011-9458151	AT2G22250.2  CDS  gene_syn AAT, ASPARTATE AMINOTRANSFERASE, ATAAT, MATERNAL EFFECT EMBRYO ARREST 17, MEE17, T26C19.9, T26C19_9  gene AAT  go_component chloroplast|GO:0009507|18431481|IDA  go_function catalytic activity|GO:0003824||IEA  go_function transferase activity, transferring nitrogenous groups|GO:0016769||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function L-aspartate:2-oxoglutarate aminotransferase activity|GO:0004069||ISS  product aminotransferase class I and II family protein  note ASPARTATE AMINOTRANSFERASE (AAT); FUNCTIONS IN: L-aspartate:2-oxoglutarate aminotransferase activity, transferase activity, transferring nitrogenous groups, pyridoxal phosphate binding, catalytic activity; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: aminotransferase class I and II family protein (TAIR:AT1G77670.1); Has 32033 Blast hits to 32031 proteins in 1793 species: Archae - 684; Bacteria - 17916; Metazoa - 676; Fungi - 572; Plants - 943; Viruses - 0; Other Eukaryotes - 11242 (source: NCBI BLink).  protein_id AT2G22250.2p  transcript_id AT2G22250.2  protein_id AT2G22250.2p  transcript_id AT2G22250.2  
At2g22250	chr2:009460176	0.0	C/9460176-9460297,9459813-9460047,9459641-9459734,9459459-9459562,9459128-9459376,9458911-9459024,9458750-9458833,9458489-9458659,9458291-9458404,9458011-9458151	AT2G22250.3  CDS  gene_syn AAT, ASPARTATE AMINOTRANSFERASE, ATAAT, MATERNAL EFFECT EMBRYO ARREST 17, MEE17, T26C19.9, T26C19_9  gene AAT  go_component chloroplast|GO:0009507|18431481|IDA  go_function catalytic activity|GO:0003824||IEA  go_function transferase activity, transferring nitrogenous groups|GO:0016769||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function L-aspartate:2-oxoglutarate aminotransferase activity|GO:0004069||ISS  product aminotransferase class I and II family protein  note ASPARTATE AMINOTRANSFERASE (AAT); FUNCTIONS IN: L-aspartate:2-oxoglutarate aminotransferase activity, transferase activity, transferring nitrogenous groups, pyridoxal phosphate binding, catalytic activity; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: aminotransferase class I and II family protein (TAIR:AT1G77670.1); Has 32033 Blast hits to 32031 proteins in 1793 species: Archae - 684; Bacteria - 17916; Metazoa - 676; Fungi - 572; Plants - 943; Viruses - 0; Other Eukaryotes - 11242 (source: NCBI BLink).  protein_id AT2G22250.3p  transcript_id AT2G22250.3  protein_id AT2G22250.3p  transcript_id AT2G22250.3  
At2g22260	chr2:009461342	0.0	W/9461342-9461386,9461472-9461536,9461706-9461817,9461931-9462146,9462385-9462501,9462582-9462774,9462857-9463053	AT2G22260.1  CDS  gene_syn T26C19.8, T26C19_8  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function oxidoreductase activity|GO:0016491||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G22270.1); Has 1075 Blast hits to 1075 proteins in 327 species: Archae - 0; Bacteria - 522; Metazoa - 94; Fungi - 109; Plants - 39; Viruses - 11; Other Eukaryotes - 300 (source: NCBI BLink).  protein_id AT2G22260.1p  transcript_id AT2G22260.1  protein_id AT2G22260.1p  transcript_id AT2G22260.1  
At2g22270	chr2:009463765	0.0	W/9463765-9463869,9463955-9464031,9464234-9464357,9464440-9464541,9464627-9464929,9465007-9465282	AT2G22270.1  CDS  gene_syn T26C19.7, T26C19_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G39860.2); Has 182 Blast hits to 158 proteins in 36 species: Archae - 0; Bacteria - 10; Metazoa - 28; Fungi - 5; Plants - 76; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT2G22270.1p  transcript_id AT2G22270.1  protein_id AT2G22270.1p  transcript_id AT2G22270.1  
At2g22280	chr2:009465581	0.0	C/9465581-9465653	AT2G22280.1  tRNA  gene_syn 51147.TRNA-ARG-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: ACG)  transcript_id AT2G22280.1  
At2g22290	chr2:009466568	0.0	W/9466568-9466684,9466997-9467067,9467151-9467351,9467454-9467688	AT2G22290.1  CDS  gene_syn ARABIDOPSIS RAB GTPASE HOMOLOG 6, ARABIDOPSIS RAB GTPASE HOMOLOG H1D, ATRAB-H1D, ATRAB6, ATRABH1D, RAB GTPASE HOMOLOG H1D, RAB-H1D, T26C19.5, T26C19_5  gene ATRABH1D  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function GTP binding|GO:0005525||ISS  product ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D); GTP binding  note ARABIDOPSIS RAB GTPASE HOMOLOG H1D (ATRABH1D); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: mitochondrion; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab6-related (InterPro:IPR015600); BEST Arabidopsis thaliana protein match is: AtRABH1e (Arabidopsis Rab GTPase homolog H1e); GTP binding (TAIR:AT5G10260.1); Has 21645 Blast hits to 21621 proteins in 596 species: Archae - 13; Bacteria - 98; Metazoa - 12090; Fungi - 2563; Plants - 1990; Viruses - 19; Other Eukaryotes - 4872 (source: NCBI BLink).  protein_id AT2G22290.1p  transcript_id AT2G22290.1  protein_id AT2G22290.1p  transcript_id AT2G22290.1  
At2g22300	chr2:009471599	0.0	W/9471599-9471638,9472187-9472306,9472399-9472514,9472636-9472724,9472895-9472937,9473034-9473244,9473332-9473442,9473559-9473845,9473968-9474025,9474119-9474483,9474562-9475241,9475327-9475855,9475948-9476265,9476341-9476472	AT2G22300.1  CDS  gene_syn CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, CAMTA3, SIGNAL RESPONSIVE 1, SR1, T26C19.4, T26C19_4  gene SR1  function Encodes a putative CAM binding transcription factor. Loss of function mutations show enhanced resistance to fungal and bacterial pathogens suggesting that CAMTA functions to suppress defense responses.  go_process response to biotic stimulus|GO:0009607|18298954|IMP  go_function calmodulin binding|GO:0005516|11782485|IEP  go_function calmodulin binding|GO:0005516|11782485|TAS  go_function transcription regulator activity|GO:0030528|12218065|TAS  product SR1 (SIGNAL RESPONSIVE 1); calmodulin binding / transcription regulator  note SIGNAL RESPONSIVE 1 (SR1); FUNCTIONS IN: transcription regulator activity, calmodulin binding; INVOLVED IN: response to biotic stimulus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), CG-1 (InterPro:IPR005559), IQ calmodulin-binding region (InterPro:IPR000048), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: calmodulin-binding protein (TAIR:AT5G64220.2); Has 4283 Blast hits to 3561 proteins in 271 species: Archae - 15; Bacteria - 256; Metazoa - 2665; Fungi - 290; Plants - 320; Viruses - 42; Other Eukaryotes - 695 (source: NCBI BLink).  protein_id AT2G22300.1p  transcript_id AT2G22300.1  protein_id AT2G22300.1p  transcript_id AT2G22300.1  
At2g22300	chr2:009471599	0.0	W/9471599-9471638,9472187-9472306,9472399-9472514,9472636-9472724,9472895-9472937,9473034-9473244,9473332-9473442,9473559-9473845,9473968-9474025,9474119-9474483,9474562-9475241,9475327-9475855,9475948-9476265,9476341-9476472	AT2G22300.2  CDS  gene_syn CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, CAMTA3, SIGNAL RESPONSIVE 1, SR1, T26C19.4, T26C19_4  gene SR1  function Encodes a putative CAM binding transcription factor. Loss of function mutations show enhanced resistance to fungal and bacterial pathogens suggesting that CAMTA functions to suppress defense responses.  go_process response to biotic stimulus|GO:0009607|18298954|IMP  go_function calmodulin binding|GO:0005516|11782485|IEP  go_function calmodulin binding|GO:0005516|11782485|TAS  go_function transcription regulator activity|GO:0030528|12218065|TAS  product SR1 (SIGNAL RESPONSIVE 1); calmodulin binding / transcription regulator  note SIGNAL RESPONSIVE 1 (SR1); FUNCTIONS IN: transcription regulator activity, calmodulin binding; INVOLVED IN: response to biotic stimulus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), CG-1 (InterPro:IPR005559), IQ calmodulin-binding region (InterPro:IPR000048), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: calmodulin-binding protein (TAIR:AT5G64220.2); Has 4283 Blast hits to 3561 proteins in 271 species: Archae - 15; Bacteria - 256; Metazoa - 2665; Fungi - 290; Plants - 320; Viruses - 42; Other Eukaryotes - 695 (source: NCBI BLink).  protein_id AT2G22300.2p  transcript_id AT2G22300.2  protein_id AT2G22300.2p  transcript_id AT2G22300.2  
At2g22310	chr2:009478709	0.0	C/9478709-9478825,9478347-9478457,9477963-9478061,9477683-9477871,9477222-9477403,9476733-9477132	AT2G22310.1  CDS  gene_syn ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4, ATUBP4, T26C19.3, T26C19_3, UBIQUITIN-SPECIFIC PROTEASE 4, UBP4  gene ATUBP4  function Encodes a ubiquitin-specific protease.  go_component nucleus|GO:0005634|9268021|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function ubiquitin-specific protease activity|GO:0004843|9268021|IDA  go_function ubiquitin-specific protease activity|GO:0004843||ISS  product ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4); ubiquitin-specific protease  note ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4 (ATUBP4); FUNCTIONS IN: ubiquitin-specific protease activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ATUBP3 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 3); ubiquitin-specific protease (TAIR:AT4G39910.1); Has 6919 Blast hits to 5768 proteins in 182 species: Archae - 0; Bacteria - 4; Metazoa - 3846; Fungi - 1083; Plants - 521; Viruses - 3; Other Eukaryotes - 1462 (source: NCBI BLink).  protein_id AT2G22310.1p  transcript_id AT2G22310.1  protein_id AT2G22310.1p  transcript_id AT2G22310.1  
At2g22320	chr2:009480105	0.0	W/9480105-9480440	AT2G22320.1  CDS  gene_syn T26C19.2, T26C19_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G22320.1p  transcript_id AT2G22320.1  protein_id AT2G22320.1p  transcript_id AT2G22320.1  
At2g22330	chr2:009488601	0.0	W/9488601-9489599,9490351-9490983	AT2G22330.1  CDS  gene_syn CYP79B3, CYTOCHROME P450, FAMILY 79, SUBFAMILY B, POLYPEPTIDE 3, T26C19.1  gene CYP79B3  function Encodes a cytochrome P450. Involved in tryptophan metabolism. Converts Trp to indole-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates.  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component chloroplast|GO:0009507||NAS  go_process tryptophan catabolic process|GO:0006569|10681464|IDA  go_process response to wounding|GO:0009611|17675405|IEP  go_process indoleacetic acid biosynthetic process|GO:0009684|15772288|IMP  go_process camalexin biosynthetic process|GO:0010120|16167893|TAS  go_process glucosinolate biosynthetic process|GO:0019761|16167893|TAS  go_process defense response to bacterium|GO:0042742|19095898|IMP  go_process callose deposition in cell wall during defense response|GO:0052544|19095898|IMP  go_function oxygen binding|GO:0019825||ISS  product CYP79B3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP79B3; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: in 7 processes; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP79B2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G39950.1); Has 20678 Blast hits to 20592 proteins in 1147 species: Archae - 19; Bacteria - 1515; Metazoa - 9552; Fungi - 3516; Plants - 5403; Viruses - 3; Other Eukaryotes - 670 (source: NCBI BLink).  protein_id AT2G22330.1p  transcript_id AT2G22330.1  protein_id AT2G22330.1p  transcript_id AT2G22330.1  
At2g22335	chr2:009491687	0.0	W/9491687-9492453	AT2G22335.1  pseudogenic_transcript  pseudo  function pseudogene of cytochrome P450 family protein  
At2g22340	chr2:009492879	0.0	C/9492879-9493955	AT2G22340.1  CDS  gene_syn F14M13.26, F14M13_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, sepal, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G22340.1p  transcript_id AT2G22340.1  protein_id AT2G22340.1p  transcript_id AT2G22340.1  
At2g22345	chr2:009495457	0.0	W/9495457-9495490,9495697-9495848	AT2G22345.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: LCR84 (Low-molecular-weight cysteine-rich 84) (TAIR:AT2G14365.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G22345.1p  transcript_id AT2G22345.1  protein_id AT2G22345.1p  transcript_id AT2G22345.1  
At2g22350	chr2:009496076	0.0	W/9496076-9497041	AT2G22350.1  mRNA_TE_gene  pseudo  gene_syn F14M13.25, F14M13_25  note Transposable element gene, similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G36905.1); similar to Ribonuclease H [Medicago truncatula] (GB:ABD28505.1); contains InterPro domain Ribonuclease H; (InterPro:IPR002156); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)  
At2g22360	chr2:009498162	0.0	W/9498162-9498271,9498460-9498604,9498706-9498763,9498940-9498982,9499305-9499353,9499431-9499514,9499620-9500459	AT2G22360.1  CDS  gene_syn F14M13.24, F14M13_24  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process protein folding|GO:0006457||IEA  go_process response to heat|GO:0009408||IEA  go_function ATP binding|GO:0005524||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock family protein  note DNAJ heat shock family protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding, ATP binding; INVOLVED IN: protein folding, response to heat; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), Heat shock protein DnaJ, cysteine-rich region (InterPro:IPR001305), Chaperone DnaJ (InterPro:IPR012724), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT4G39960.1); Has 21022 Blast hits to 20639 proteins in 2115 species: Archae - 131; Bacteria - 6222; Metazoa - 3834; Fungi - 1668; Plants - 1463; Viruses - 35; Other Eukaryotes - 7669 (source: NCBI BLink).  protein_id AT2G22360.1p  transcript_id AT2G22360.1  protein_id AT2G22360.1p  transcript_id AT2G22360.1  
At2g22370	chr2:009502037	0.0	C/9502037-9502078,9501790-9501889,9501642-9501699,9501208-9501564,9501019-9501121	AT2G22370.1  CDS  gene_syn F14M13.23, F14M13_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 87 Blast hits to 87 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 70; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G22370.1p  transcript_id AT2G22370.1  protein_id AT2G22370.1p  transcript_id AT2G22370.1  
At2g22380	chr2:009502280	0.0	W/9502280-9502353	AT2G22380.1  tRNA  gene_syn 51058.TRNA-ILE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ile (anticodon: AAT)  transcript_id AT2G22380.1  
At2g22390	chr2:009503364	0.0	W/9503364-9504587	AT2G22390.1  pseudogenic_transcript  pseudo  gene_syn ATRABA4E, F14M13.21, F14M13_21, RABA4E  gene RABA4E  note pseudogene, putative GTP-binding protein, similar to GTP-binding protein GI:303738 from (Pisum sativum); blastp match of 75% identity and 3.6e-56 P-value to GP|303738|dbj|BAA02110.1||D12542 GTP-binding protein {Pisum sativum}  
At2g22400	chr2:009508603	0.0	C/9508603-9508788,9508347-9508435,9508125-9508191,9507928-9508043,9507701-9507767,9507563-9507611,9507321-9507406,9506975-9507234,9506815-9506870,9506632-9506717,9506458-9506550,9506040-9506361,9505439-9505953,9505106-9505340,9504823-9505022	AT2G22400.1  CDS  gene_syn F14M13.20, F14M13_20  go_component cellular_component|GO:0005575||ND  product NOL1/NOP2/sun family protein  note NOL1/NOP2/sun family protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678), Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site (InterPro:IPR018314); BEST Arabidopsis thaliana protein match is: NOL1/NOP2/sun family protein (TAIR:AT4G40000.1); Has 5426 Blast hits to 5396 proteins in 1280 species: Archae - 185; Bacteria - 3179; Metazoa - 525; Fungi - 201; Plants - 119; Viruses - 0; Other Eukaryotes - 1217 (source: NCBI BLink).  protein_id AT2G22400.1p  transcript_id AT2G22400.1  protein_id AT2G22400.1p  transcript_id AT2G22400.1  
At2g22410	chr2:009509035	0.0	W/9509035-9511080	AT2G22410.1  CDS  gene_syn F14M13.19, F14M13_19  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G29760.1); Has 15605 Blast hits to 5371 proteins in 175 species: Archae - 0; Bacteria - 2; Metazoa - 202; Fungi - 156; Plants - 14864; Viruses - 0; Other Eukaryotes - 381 (source: NCBI BLink).  protein_id AT2G22410.1p  transcript_id AT2G22410.1  protein_id AT2G22410.1p  transcript_id AT2G22410.1  
At2g22420	chr2:009513341	0.0	W/9513341-9513544,9513628-9513819,9513891-9514484	AT2G22420.1  CDS  gene_syn F14M13.18, F14M13_18  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase 17 (PER17) (P17)  note peroxidase 17 (PER17) (P17); FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT2G18150.1); Has 3110 Blast hits to 3096 proteins in 230 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 255; Plants - 2806; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT2G22420.1p  transcript_id AT2G22420.1  protein_id AT2G22420.1p  transcript_id AT2G22420.1  
At2g22425	chr2:009515079	0.0	W/9515079-9515357	AT2G22425.1  CDS  go_component signal peptidase complex|GO:0005787||IEA  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process signal peptide processing|GO:0006465||IEA  go_function peptidase activity|GO:0008233||IEA  product peptidase  note peptidase; FUNCTIONS IN: peptidase activity; INVOLVED IN: signal peptide processing; LOCATED IN: endomembrane system, signal peptidase complex, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Microsomal signal peptidase 12 kDa subunit (InterPro:IPR009542); BEST Arabidopsis thaliana protein match is: peptidase (TAIR:AT4G40042.1); Has 209 Blast hits to 209 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 103; Fungi - 54; Plants - 36; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT2G22425.1p  transcript_id AT2G22425.1  protein_id AT2G22425.1p  transcript_id AT2G22425.1  
At2g22425	chr2:009515079	0.0	W/9515079-9515357	AT2G22425.2  CDS  go_component signal peptidase complex|GO:0005787||IEA  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process signal peptide processing|GO:0006465||IEA  go_function peptidase activity|GO:0008233||IEA  product peptidase  note peptidase; FUNCTIONS IN: peptidase activity; INVOLVED IN: signal peptide processing; LOCATED IN: endomembrane system, integral to membrane, signal peptidase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Microsomal signal peptidase 12 kDa subunit (InterPro:IPR009542); BEST Arabidopsis thaliana protein match is: peptidase (TAIR:AT4G40042.1); Has 209 Blast hits to 209 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 103; Fungi - 54; Plants - 36; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT2G22425.2p  transcript_id AT2G22425.2  protein_id AT2G22425.2p  transcript_id AT2G22425.2  
At2g22426	chr2:009517017	0.0	W/9517017-9517229	AT2G22426.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G22426.1p  transcript_id AT2G22426.1  protein_id AT2G22426.1p  transcript_id AT2G22426.1  
At2g22430	chr2:009527543	0.0	C/9527543-9527612,9527084-9527463,9526470-9526955	AT2G22430.1  CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 6, ATHB6, F14M13.17, F14M13_17  gene ATHB6  function Encodes a homeodomain leucine zipper class I (HD-Zip I) protein that is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to water deprivation|GO:0009414|10527431|IEP  go_process abscisic acid mediated signaling|GO:0009738|12065416|TAS  go_process negative regulation of abscisic acid mediated signaling|GO:0009788|12065416|IMP  go_process positive regulation of transcription|GO:0045941|16055682|IDA  go_function DNA binding|GO:0003677|12065416|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12065416|TAS  go_function protein binding|GO:0005515|12065416|IPI  go_function transcription activator activity|GO:0016563|16055682|IDA  go_function sequence-specific DNA binding|GO:0043565|11247607|IDA  product ATHB6; DNA binding / protein binding / sequence-specific DNA binding / transcription activator/ transcription factor  note ATHB6; FUNCTIONS IN: protein binding, transcription factor activity, sequence-specific DNA binding, transcription activator activity, DNA binding; INVOLVED IN: response to water deprivation, positive regulation of transcription, negative regulation of abscisic acid mediated signaling, abscisic acid mediated signaling, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ATHB16 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 16); sequence-specific DNA binding / transcription activator/ transcription factor (TAIR:AT4G40060.1); Has 8993 Blast hits to 8968 proteins in 474 species: Archae - 5; Bacteria - 12; Metazoa - 7279; Fungi - 149; Plants - 1349; Viruses - 5; Other Eukaryotes - 194 (source: NCBI BLink).  protein_id AT2G22430.1p  transcript_id AT2G22430.1  protein_id AT2G22430.1p  transcript_id AT2G22430.1  
At2g22440	chr2:009528910	0.0	W/9528910-9529234,9529472-9529917	AT2G22440.1  CDS  gene_syn F14M13.16, F14M13_16  product unknown protein  note BEST Arabidopsis thaliana protein match is: reverse transcriptase, putative / RNA-dependent DNA polymerase, putative (TAIR:AT4G29090.1); Has 149 Blast hits to 133 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G22440.1p  transcript_id AT2G22440.1  protein_id AT2G22440.1p  transcript_id AT2G22440.1  
At2g22450	chr2:009530654	0.0	W/9530654-9530703,9530887-9531196,9531282-9531503,9531594-9531916,9532012-9532141,9532214-9532486,9532569-9532691	AT2G22450.1  CDS  gene_syn F14M13.15, F14M13_15  go_component chloroplast|GO:0009507|18431481|IDA  go_process riboflavin biosynthetic process|GO:0009231||IEA  go_function GTP cyclohydrolase II activity|GO:0003935||IEA  go_function 3,4-dihydroxy-2-butanone-4-phosphate synthase activity|GO:0008686||IEA  go_process riboflavin biosynthetic process|GO:0009231||ISS  go_function GTP cyclohydrolase II activity|GO:0003935||ISS  go_function 3,4-dihydroxy-2-butanone-4-phosphate synthase activity|GO:0008686||ISS  product riboflavin biosynthesis protein, putative  note riboflavin biosynthesis protein, putative; FUNCTIONS IN: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, GTP cyclohydrolase II activity; INVOLVED IN: riboflavin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP cyclohydrolase II (InterPro:IPR000926), Riboflavin biosynthesis protein RibA (InterPro:IPR016299), DHBP synthase RibB (InterPro:IPR000422), DHBP synthase RibB-like alpha/beta domain (InterPro:IPR017945); BEST Arabidopsis thaliana protein match is: ATGCH; 3,4-dihydroxy-2-butanone-4-phosphate synthase/ GTP cyclohydrolase II (TAIR:AT5G64300.1); Has 8135 Blast hits to 8135 proteins in 1304 species: Archae - 132; Bacteria - 3956; Metazoa - 0; Fungi - 206; Plants - 55; Viruses - 0; Other Eukaryotes - 3786 (source: NCBI BLink).  protein_id AT2G22450.1p  transcript_id AT2G22450.1  protein_id AT2G22450.1p  transcript_id AT2G22450.1  
At2g22460	chr2:009533354	0.0	C/9533354-9534091	AT2G22460.1  CDS  gene_syn F14M13.14, F14M13_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF617, plant (InterPro:IPR006460); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65340.1); Has 134 Blast hits to 134 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G22460.1p  transcript_id AT2G22460.1  protein_id AT2G22460.1p  transcript_id AT2G22460.1  
At2g22470	chr2:009538400	0.0	C/9538400-9538795	AT2G22470.1  CDS  gene_syn AGP2, ARABINOGALACTAN PROTEIN 2, ARABINOGALACTAN-PROTEIN 2, ATAGP2, F14M13.13, F14M13_13  gene AGP2  function Encodes arabinogalactan-protein (AGP2).  go_component cytoplasm|GO:0005737|15610358|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  product AGP2 (ARABINOGALACTAN PROTEIN 2)  note ARABINOGALACTAN PROTEIN 2 (AGP2); LOCATED IN: anchored to membrane, cytoplasm; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 37257 Blast hits to 16083 proteins in 1034 species: Archae - 298; Bacteria - 10308; Metazoa - 8220; Fungi - 3221; Plants - 5833; Viruses - 1567; Other Eukaryotes - 7810 (source: NCBI BLink).  protein_id AT2G22470.1p  transcript_id AT2G22470.1  protein_id AT2G22470.1p  transcript_id AT2G22470.1  
At2g22475	chr2:009541523	0.0	W/9541523-9541859,9541960-9542061,9543935-9544206,9544590-9544778	AT2G22475.1  CDS  gene_syn GEM, GL2-EXPRESSION MODULATOR  gene GEM  function Encodes GL2-expression modulator (GEM). Involved in the spatial control of cell division, patterning and differentiation of Arabidopsis root epidermal cells. GEM interacts with CDT1, a DNA replication protein and TTG1 (TRANSPARENT TESTA GLABRA1), a WD40-repeat protein involved in GL2-dependent cell fate decision. GEM seems to participate in the maintenance of a repressor histone H3 epigenetics status of the GL2 and CPC (CAPRICE) promoters.  go_component cellular_component|GO:0005575||ND  go_process trichome differentiation|GO:0010026|17450124|IMP  go_process regulation of epidermal cell division|GO:0010482|17450124|IMP  go_process root hair cell differentiation|GO:0048765|17450124|IMP  go_process histone H3-K9 methylation|GO:0051567|17450124|IDA  go_function molecular_function|GO:0003674||ND  product GEM (GL2-EXPRESSION MODULATOR)  note GL2-EXPRESSION MODULATOR (GEM); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: trichome differentiation, regulation of epidermal cell division, root hair cell differentiation, histone H3-K9 methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182); BEST Arabidopsis thaliana protein match is: ABA-responsive protein-related (TAIR:AT4G40100.1); Has 196 Blast hits to 195 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 196; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G22475.1p  transcript_id AT2G22475.1  protein_id AT2G22475.1p  transcript_id AT2G22475.1  
At2g22475	chr2:009541523	0.0	W/9541523-9541859,9541960-9542061,9543935-9544242	AT2G22475.2  CDS  gene_syn GEM, GL2-EXPRESSION MODULATOR  gene GEM  function Encodes GL2-expression modulator (GEM). Involved in the spatial control of cell division, patterning and differentiation of Arabidopsis root epidermal cells. GEM interacts with CDT1, a DNA replication protein and TTG1 (TRANSPARENT TESTA GLABRA1), a WD40-repeat protein involved in GL2-dependent cell fate decision. GEM seems to participate in the maintenance of a repressor histone H3 epigenetics status of the GL2 and CPC (CAPRICE) promoters.  go_component cellular_component|GO:0005575||ND  go_process trichome differentiation|GO:0010026|17450124|IMP  go_process regulation of epidermal cell division|GO:0010482|17450124|IMP  go_process root hair cell differentiation|GO:0048765|17450124|IMP  go_process histone H3-K9 methylation|GO:0051567|17450124|IDA  go_function molecular_function|GO:0003674||ND  product GEM (GL2-EXPRESSION MODULATOR)  note GL2-EXPRESSION MODULATOR (GEM); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: trichome differentiation, regulation of epidermal cell division, root hair cell differentiation, histone H3-K9 methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182); BEST Arabidopsis thaliana protein match is: ABA-responsive protein-related (TAIR:AT4G40100.1); Has 187 Blast hits to 187 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 187; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G22475.2p  transcript_id AT2G22475.2  protein_id AT2G22475.2p  transcript_id AT2G22475.2  
At2g22480	chr2:009545670	0.0	W/9545670-9545995,9546074-9546161,9546233-9546306,9546389-9546500,9546604-9546699,9546787-9546888,9546968-9547042,9547163-9547303,9547395-9547511,9547587-9547691,9547794-9547874,9547980-9548108,9548247-9548414	AT2G22480.1  CDS  gene_syn F14M13.12, F14M13_12, PFK5, PHOSPHOFRUCTOKINASE 5  gene PFK5  go_component 6-phosphofructokinase complex|GO:0005945||ISS  go_component chloroplast|GO:0009507|17485088|IDA  go_process glycolysis|GO:0006096|17485088|ISS  go_process glycolysis|GO:0006096||ISS  go_function 6-phosphofructokinase activity|GO:0003872|17485088|ISS  go_function 6-phosphofructokinase activity|GO:0003872||ISS  product PFK5 (PHOSPHOFRUCTOKINASE 5); 6-phosphofructokinase  note PHOSPHOFRUCTOKINASE 5 (PFK5); FUNCTIONS IN: 6-phosphofructokinase activity; INVOLVED IN: glycolysis; LOCATED IN: 6-phosphofructokinase complex, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase TP0108 (InterPro:IPR012004), Phosphofructokinase (InterPro:IPR000023); BEST Arabidopsis thaliana protein match is: PFK7 (PHOSPHOFRUCTOKINASE 7); 6-phosphofructokinase (TAIR:AT5G56630.1); Has 4904 Blast hits to 4496 proteins in 1149 species: Archae - 20; Bacteria - 2542; Metazoa - 558; Fungi - 275; Plants - 228; Viruses - 2; Other Eukaryotes - 1279 (source: NCBI BLink).  protein_id AT2G22480.1p  transcript_id AT2G22480.1  protein_id AT2G22480.1p  transcript_id AT2G22480.1  
At2g22490	chr2:009555556	0.0	C/9555556-9555873,9555229-9555315,9555048-9555146,9554750-9554945,9554505-9554632,9554157-9554414	AT2G22490.1  CDS  gene_syn CYCD2;1, Cyclin D2;1, F14M13.11, F14M13_11  gene CYCD2;1  function encodes a D-type cyclin whose transcription level is regulated by sucrose but not phytohormones or nitrate. Protein physically interacts with CDC2A. CycD2 kinase activity is regulated by sequestration of CycD2 protein in a form inaccessible to immunoprecipitation and probably not complexed to CDC2A.  go_component nucleus|GO:0005634||IEA  go_process G1 phase of mitotic cell cycle|GO:0000080|10850717|ISS  go_process response to sucrose stimulus|GO:0009744|10848578|IEP  go_process regulation of cell cycle|GO:0051726||ISS  go_function protein binding|GO:0005515|9620273|IPI  go_function cyclin-dependent protein kinase regulator activity|GO:0016538||ISS  product CYCD2;1 (Cyclin D2;1); cyclin-dependent protein kinase regulator/ protein binding  note Cyclin D2;1 (CYCD2;1); FUNCTIONS IN: protein binding, cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle, G1 phase of mitotic cell cycle, response to sucrose stimulus; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCD4;1 (CYCLIN D4;1); cyclin-dependent protein kinase regulator (TAIR:AT5G65420.1); Has 2577 Blast hits to 2575 proteins in 243 species: Archae - 0; Bacteria - 0; Metazoa - 1410; Fungi - 212; Plants - 696; Viruses - 0; Other Eukaryotes - 259 (source: NCBI BLink).  protein_id AT2G22490.1p  transcript_id AT2G22490.1  protein_id AT2G22490.1p  transcript_id AT2G22490.1  
At2g22496	chr2:009560761	0.0	W/9560761-9560923	AT2G22496.1  miRNA  gene_syn MICRORNA779A, MIR779A  gene MIR779A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUCUGCUAUGUUGCUGCUCAU  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR779A (MICRORNA779A); miRNA  transcript_id AT2G22496.1  
At2g22500	chr2:009563531	0.0	C/9563531-9564472	AT2G22500.1  CDS  gene_syn ATPUMP5, F14M13.10, F14M13_10, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, UCP5, UNCOUPLING PROTEIN 5  gene UCP5  go_component mitochondrion|GO:0005739||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_process mitochondrial transport|GO:0006839||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function binding|GO:0005488||ISS  product UCP5 (UNCOUPLING PROTEIN 5); binding  note UNCOUPLING PROTEIN 5 (UCP5); FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrion, mitochondrial inner membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial brown fat uncoupling protein (InterPro:IPR002030), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: mitochondrial substrate carrier family protein (TAIR:AT4G24570.1); Has 18126 Blast hits to 9497 proteins in 356 species: Archae - 0; Bacteria - 0; Metazoa - 9042; Fungi - 4779; Plants - 2727; Viruses - 0; Other Eukaryotes - 1578 (source: NCBI BLink).  protein_id AT2G22500.1p  transcript_id AT2G22500.1  protein_id AT2G22500.1p  transcript_id AT2G22500.1  
At2g22510	chr2:009569327	0.0	C/9569327-9569701	AT2G22510.1  CDS  gene_syn F14M13.9, F14M13_9  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, hypocotyl, root, leaf; Has 4329 Blast hits to 2021 proteins in 294 species: Archae - 29; Bacteria - 704; Metazoa - 801; Fungi - 266; Plants - 1188; Viruses - 394; Other Eukaryotes - 947 (source: NCBI BLink).  protein_id AT2G22510.1p  transcript_id AT2G22510.1  protein_id AT2G22510.1p  transcript_id AT2G22510.1  
At2g22520	chr2:009572066	0.0	W/9572066-9572377,9572480-9572623	AT2G22520.2  CDS  gene_syn F14M13.8, F14M13_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G22520.2p  transcript_id AT2G22520.2  protein_id AT2G22520.2p  transcript_id AT2G22520.2  
At2g22520	chr2:009572066	0.0	W/9572066-9572623	AT2G22520.1  CDS  gene_syn F14M13.8, F14M13_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; Has 179 Blast hits to 32 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 11; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).  protein_id AT2G22520.1p  transcript_id AT2G22520.1  protein_id AT2G22520.1p  transcript_id AT2G22520.1  
At2g22530	chr2:009577311	0.0	C/9577311-9577441,9577137-9577233,9577017-9577061,9576768-9576935,9576594-9576678,9576400-9576506,9576234-9576314,9576015-9576067,9575824-9575926,9575602-9575745,9575370-9575466,9575043-9575280,9574854-9574950,9573812-9574723,9573633-9573725,9573241-9573536,9572971-9573100	AT2G22530.1  CDS  gene_syn F14M13.7, F14M13_7  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_process phospholipid biosynthetic process|GO:0008654||ISS  go_function transferase activity|GO:0016740||ISS  product catalytic/ transferase  note catalytic/ transferase; FUNCTIONS IN: transferase activity, catalytic activity; INVOLVED IN: metabolic process, phospholipid biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Alkaline phosphatase-like, alpha/beta/alpha (InterPro:IPR017849), Alkaline-phosphatase-like, core domain (InterPro:IPR017850); BEST Arabidopsis thaliana protein match is: catalytic/ transferase (TAIR:AT5G17250.1); Has 1116 Blast hits to 978 proteins in 227 species: Archae - 2; Bacteria - 151; Metazoa - 441; Fungi - 321; Plants - 48; Viruses - 0; Other Eukaryotes - 153 (source: NCBI BLink).  protein_id AT2G22530.1p  transcript_id AT2G22530.1  protein_id AT2G22530.1p  transcript_id AT2G22530.1  
At2g22540	chr2:009580417	0.0	W/9580417-9580583,9581506-9581584,9581871-9581935,9582051-9582150,9582236-9582277,9582389-9582430,9582902-9582943,9583042-9583193,9583585-9583603	AT2G22540.2  CDS  gene_syn AGL22, AT2G22550, F14M13.6, F14M13_6, SHORT VEGETATIVE PHASE, SVP  gene SVP  function Encodes a nuclear protein that acts as a floral repressor and that functions within the thermosensory pathway. SVP represses FT expression via direct binding to the vCArG III motif in the FT promoter.  go_component nucleus|GO:0005634|17322399|IDA  go_process response to temperature stimulus|GO:0009266|17322399|IMP  go_process negative regulation of flower development|GO:0009910|10758486|IMP  go_process maintenance of floral meristem identity|GO:0010076|18694458|IGI  go_process floral meristem determinacy|GO:0010582|18694458|IGI  go_process negative regulation of transcription|GO:0016481|17322399|IDA  go_process floral whorl development|GO:0048438|16679456|IGI  go_function translation repressor activity, nucleic acid binding|GO:0000900|17322399|IDA  go_function transcription factor activity|GO:0003700|10758486|ISS  go_function transcription factor activity|GO:0003700|10758486|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product SVP (SHORT VEGETATIVE PHASE); transcription factor/ translation repressor, nucleic acid binding  note SHORT VEGETATIVE PHASE (SVP); FUNCTIONS IN: transcription factor activity, translation repressor activity, nucleic acid binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGL24 (AGAMOUS-LIKE 24); protein binding / protein heterodimerization/ protein homodimerization/ sequence-specific DNA binding / transcription factor (TAIR:AT4G24540.1).  protein_id AT2G22540.2p  transcript_id AT2G22540.2  protein_id AT2G22540.2p  transcript_id AT2G22540.2  
At2g22540	chr2:009580417	0.0	W/9580417-9580598,9581506-9581584,9581871-9581935,9582051-9582150,9582236-9582277,9582389-9582430,9582902-9582943,9583042-9583193,9583585-9583603	AT2G22540.1  CDS  gene_syn AGL22, AT2G22550, F14M13.6, F14M13_6, SHORT VEGETATIVE PHASE, SVP  gene SVP  function Encodes a nuclear protein that acts as a floral repressor and that functions within the thermosensory pathway. SVP represses FT expression via direct binding to the vCArG III motif in the FT promoter.  go_component nucleus|GO:0005634|17322399|IDA  go_process response to temperature stimulus|GO:0009266|17322399|IMP  go_process negative regulation of flower development|GO:0009910|10758486|IMP  go_process maintenance of floral meristem identity|GO:0010076|18694458|IGI  go_process floral meristem determinacy|GO:0010582|18694458|IGI  go_process negative regulation of transcription|GO:0016481|17322399|IDA  go_process floral whorl development|GO:0048438|16679456|IGI  go_function translation repressor activity, nucleic acid binding|GO:0000900|17322399|IDA  go_function transcription factor activity|GO:0003700|10758486|ISS  go_function transcription factor activity|GO:0003700|10758486|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product SVP (SHORT VEGETATIVE PHASE); transcription factor/ translation repressor, nucleic acid binding  note SHORT VEGETATIVE PHASE (SVP); FUNCTIONS IN: transcription factor activity, translation repressor activity, nucleic acid binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGL24 (AGAMOUS-LIKE 24); protein binding / protein heterodimerization/ protein homodimerization/ sequence-specific DNA binding / transcription factor (TAIR:AT4G24540.1); Has 5410 Blast hits to 5384 proteins in 681 species: Archae - 3; Bacteria - 10; Metazoa - 732; Fungi - 219; Plants - 4333; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).  protein_id AT2G22540.1p  transcript_id AT2G22540.1  protein_id AT2G22540.1p  transcript_id AT2G22540.1  
At2g22560	chr2:009585892	0.0	W/9585892-9585985,9586089-9588838	AT2G22560.1  CDS  gene_syn F14M13.4, F14M13_4  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: KIP1-like (InterPro:IPR011684); BEST Arabidopsis thaliana protein match is: kinase interacting family protein (TAIR:AT5G10500.1); Has 47807 Blast hits to 30104 proteins in 1314 species: Archae - 612; Bacteria - 5009; Metazoa - 22214; Fungi - 3986; Plants - 1654; Viruses - 215; Other Eukaryotes - 14117 (source: NCBI BLink).  protein_id AT2G22560.1p  transcript_id AT2G22560.1  protein_id AT2G22560.1p  transcript_id AT2G22560.1  
At2g22570	chr2:009590697	0.0	C/9590697-9590846,9590308-9590491,9590021-9590214	AT2G22570.2  CDS  gene_syn A. THALIANA NICOTINAMIDASE 1, ATNIC1, F14M13.1, NIC1, NIC2, NICOTINAMIDASE 1  gene NIC1  function encodes a nicotinamidase that converts nicotinamide into nicotinic acid. As such the encoded enzyme is involved in the pyridine nucleotide salvage pathway which may be connected to the de novo NAD biosynthesis through the ABA signaling pathway.  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_process response to abscisic acid stimulus|GO:0009737|17335512|IMP  go_process pyridine nucleotide salvage|GO:0019365|17335512|IMP  go_function catalytic activity|GO:0003824||ISS  go_function nicotinamidase activity|GO:0008936|17335512|IDA  go_function nicotinamidase activity|GO:0008936|17335512|IMP  product NIC1 (NICOTINAMIDASE 1); catalytic/ nicotinamidase  note NICOTINAMIDASE 1 (NIC1); FUNCTIONS IN: nicotinamidase activity, catalytic activity; INVOLVED IN: pyridine nucleotide salvage, response to abscisic acid stimulus, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isochorismatase hydrolase (InterPro:IPR000868); Has 112 Blast hits to 112 proteins in 44 species: Archae - 2; Bacteria - 63; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT2G22570.2p  transcript_id AT2G22570.2  protein_id AT2G22570.2p  transcript_id AT2G22570.2  
At2g22570	chr2:009590697	0.0	C/9590697-9590846,9590308-9590491,9590081-9590214,9589797-9589982,9589604-9589684	AT2G22570.1  CDS  gene_syn A. THALIANA NICOTINAMIDASE 1, ATNIC1, F14M13.1, NIC1, NIC2, NICOTINAMIDASE 1  gene NIC1  function encodes a nicotinamidase that converts nicotinamide into nicotinic acid. As such the encoded enzyme is involved in the pyridine nucleotide salvage pathway which may be connected to the de novo NAD biosynthesis through the ABA signaling pathway.  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_process response to abscisic acid stimulus|GO:0009737|17335512|IMP  go_process pyridine nucleotide salvage|GO:0019365|17335512|IMP  go_function catalytic activity|GO:0003824||ISS  go_function nicotinamidase activity|GO:0008936|17335512|IDA  go_function nicotinamidase activity|GO:0008936|17335512|IMP  product NIC1 (NICOTINAMIDASE 1); catalytic/ nicotinamidase  note NICOTINAMIDASE 1 (NIC1); FUNCTIONS IN: nicotinamidase activity, catalytic activity; INVOLVED IN: pyridine nucleotide salvage, response to abscisic acid stimulus, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isochorismatase hydrolase (InterPro:IPR000868); Has 518 Blast hits to 518 proteins in 239 species: Archae - 17; Bacteria - 443; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT2G22570.1p  transcript_id AT2G22570.1  protein_id AT2G22570.1p  transcript_id AT2G22570.1  
At2g22580	chr2:009591027	0.0	W/9591027-9591099	AT2G22580.1  tRNA  gene_syn 49293.TRNA-ALA-1, 51058.TRNA-ALA-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: CGC)  transcript_id AT2G22580.1  
At2g22590	chr2:009593012	0.0	W/9593012-9594424	AT2G22590.1  CDS  gene_syn T9I22.3, T9I22_3  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product transferase, transferring glycosyl groups  note transferase, transferring glycosyl groups; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT5G65550.1); Has 2994 Blast hits to 2899 proteins in 191 species: Archae - 0; Bacteria - 30; Metazoa - 269; Fungi - 10; Plants - 2677; Viruses - 2; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT2G22590.1p  transcript_id AT2G22590.1  protein_id AT2G22590.1p  transcript_id AT2G22590.1  
At2g22600	chr2:009596617	0.0	W/9596617-9597186,9597295-9597714,9597818-9598084,9598176-9598346,9598411-9598646,9598734-9598842,9598925-9599050	AT2G22600.1  CDS  gene_syn T9I22.4, T9I22_4  go_function RNA binding|GO:0003723||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product KH domain-containing protein  note KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT1G51580.1); Has 1624 Blast hits to 1129 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 1160; Fungi - 81; Plants - 352; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT2G22600.1p  transcript_id AT2G22600.1  protein_id AT2G22600.1p  transcript_id AT2G22600.1  
At2g22610	chr2:009599550	0.0	W/9599550-9599717,9599884-9599971,9600018-9600320,9600434-9600598,9600700-9600770,9600863-9601046,9601163-9601272,9601375-9601474,9601560-9601646,9601732-9601908,9601993-9602266,9602353-9602514,9602599-9602814,9602921-9602958,9603050-9603213,9603312-9603554,9603639-9603704,9603790-9603915,9603997-9604062,9604153-9604626	AT2G22610.1  CDS  gene_syn T9I22.5, T9I22_5  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product kinesin motor protein-related  note kinesin motor protein-related; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin motor protein-related (TAIR:AT1G72250.1); Has 61125 Blast hits to 37324 proteins in 1305 species: Archae - 470; Bacteria - 4361; Metazoa - 29529; Fungi - 3969; Plants - 2072; Viruses - 206; Other Eukaryotes - 20518 (source: NCBI BLink).  protein_id AT2G22610.1p  transcript_id AT2G22610.1  protein_id AT2G22610.1p  transcript_id AT2G22610.1  
At2g22620	chr2:009610053	0.0	C/9610053-9610156,9608479-9608557,9608292-9608407,9608085-9608135,9607706-9607825,9607491-9607610,9607265-9607400,9606940-9607110,9606602-9606757,9606380-9606486,9606182-9606272,9605926-9606067,9605617-9605776,9605356-9605472,9604902-9605265	AT2G22620.1  CDS  gene_syn T9I22.6, T9I22_6  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function lyase activity|GO:0016829||ISS  product lyase  note lyase; FUNCTIONS IN: lyase activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Rhamnogalacturonate lyase (InterPro:IPR010325), Carbohydrate-binding-like fold (InterPro:IPR013784), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: lyase (TAIR:AT4G37950.1); Has 149 Blast hits to 140 proteins in 41 species: Archae - 0; Bacteria - 21; Metazoa - 0; Fungi - 52; Plants - 75; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G22620.1p  transcript_id AT2G22620.1  protein_id AT2G22620.1p  transcript_id AT2G22620.1  
At2g22630	chr2:009618372	0.0	W/9618372-9618553,9619693-9619771,9619902-9619963,9620750-9620849,9620953-9620994,9621266-9621349,9621507-9621641	AT2G22630.1  CDS  gene_syn AGL17, T9I22.7, T9I22_7, agamous-like 17  gene AGL17  function Encodes a MADs domain containing protein involved in promoting flowering. Loss of function mutations show delayed flowering in long days and reduced levels of LFY and AP1 expression.  go_component nucleus|GO:0005634||IEA  go_process positive regulation of long-day photoperiodism, flowering|GO:0048578|18363787|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700|7549482|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL17 (agamous-like 17); transcription factor  note agamous-like 17 (AGL17); FUNCTIONS IN: transcription factor activity; INVOLVED IN: positive regulation of long-day photoperiodism, flowering; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGL21; transcription factor (TAIR:AT4G37940.1); Has 5324 Blast hits to 5317 proteins in 703 species: Archae - 2; Bacteria - 13; Metazoa - 626; Fungi - 210; Plants - 4378; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT2G22630.1p  transcript_id AT2G22630.1  protein_id AT2G22630.1p  transcript_id AT2G22630.1  
At2g22640	chr2:009623283	0.0	W/9623283-9623415,9623814-9623938	AT2G22640.1  CDS  gene_syn BRICK1, BRK1, HSPC300, T9I22.8, T9I22_8  gene BRK1  function Component of the WAVE protein complex which act as activators of ARP2/3 complex involved in actin nucleation. Required for trichome morphogenesis. Required for accumulation of SCAR1 protein in vivo. Selectively stabilizes SCAR2.  go_component SCAR complex|GO:0031209|15653407|TAS  go_process cell morphogenesis|GO:0000902|16584883|IMP  go_process establishment or maintenance of cell polarity|GO:0007163||ISS  go_process trichome morphogenesis|GO:0010090|15653407|IMP  go_process actin filament polymerization|GO:0030041|16481352|TAS  go_process actin nucleation|GO:0045010|15653407|TAS  go_function molecular_function|GO:0003674||ND  product BRK1 (BRICK1)  note BRICK1 (BRK1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell morphogenesis, actin nucleation, actin filament polymerization, establishment or maintenance of cell polarity, trichome morphogenesis; LOCATED IN: SCAR complex; EXPRESSED IN: whole plant; Has 140 Blast hits to 140 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 97; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT2G22640.1p  transcript_id AT2G22640.1  protein_id AT2G22640.1p  transcript_id AT2G22640.1  
At2g22650	chr2:009626864	0.0	C/9626864-9626931,9626735-9626792,9626544-9626652,9626335-9626479,9626204-9626255,9625978-9626124,9625806-9625905,9625409-9625535,9624703-9625159	AT2G22650.1  CDS  gene_syn T9I22.9, T9I22_9  go_function oxidoreductase activity|GO:0016491||IEA  product FAD-dependent oxidoreductase family protein  note FAD-dependent oxidoreductase family protein; FUNCTIONS IN: oxidoreductase activity; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: FAD dependent oxidoreductase (InterPro:IPR006076); Has 324 Blast hits to 321 proteins in 121 species: Archae - 2; Bacteria - 191; Metazoa - 0; Fungi - 12; Plants - 24; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT2G22650.1p  transcript_id AT2G22650.1  protein_id AT2G22650.1p  transcript_id AT2G22650.1  
At2g22660	chr2:009627737	0.0	W/9627737-9627900,9627983-9628103,9628192-9628446,9628538-9628993,9629075-9629619,9629738-9629930,9630029-9630184,9630271-9630840	AT2G22660.2  CDS  gene_syn T9I22.10, T9I22_10  go_component plasma membrane|GO:0005886|17644812|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1399 (InterPro:IPR009836); BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G37900.1); Has 14843 Blast hits to 4550 proteins in 469 species: Archae - 40; Bacteria - 5555; Metazoa - 4422; Fungi - 897; Plants - 1977; Viruses - 191; Other Eukaryotes - 1761 (source: NCBI BLink).  protein_id AT2G22660.2p  transcript_id AT2G22660.2  protein_id AT2G22660.2p  transcript_id AT2G22660.2  
At2g22660	chr2:009627737	0.0	W/9627737-9627900,9627983-9628103,9628192-9628446,9628538-9628993,9629075-9629619,9629738-9629957	AT2G22660.1  CDS  gene_syn T9I22.10, T9I22_10  go_component plasma membrane|GO:0005886|17644812|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1399 (InterPro:IPR009836); BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G37900.1); Has 257 Blast hits to 239 proteins in 58 species: Archae - 0; Bacteria - 21; Metazoa - 12; Fungi - 149; Plants - 61; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT2G22660.1p  transcript_id AT2G22660.1  protein_id AT2G22660.1p  transcript_id AT2G22660.1  
At2g22668	chr2:009634957	0.0	C/9634957-9635113	AT2G22668.1  miRNA  gene_syn MICRORNA405A, MIR405A  gene MIR405A  function Encodes a microRNA. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence:ATGAGTTGGGTCTAACCCATAACT  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR405A (MICRORNA405A); miRNA  transcript_id AT2G22668.1  
At2g22670	chr2:009637136	0.0	W/9637136-9637623,9637721-9637950,9638047-9638188,9638275-9638336,9638416-9638459	AT2G22670.1  CDS  gene_syn IAA8, INDOLEACETIC ACID-INDUCED PROTEIN 8, T9I22.11, T9I22_11  gene IAA8  function IAA8 (IAA8) gene is auxin inducible.  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process response to auxin stimulus|GO:0009733|12036262|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product IAA8; transcription factor  note IAA8; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to auxin stimulus; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA9 (INDOLE-3-ACETIC ACID INDUCIBLE 9); transcription factor (TAIR:AT5G65670.2); Has 1033 Blast hits to 1032 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1032; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G22670.1p  transcript_id AT2G22670.1  protein_id AT2G22670.1p  transcript_id AT2G22670.1  
At2g22670	chr2:009637136	0.0	W/9637136-9637623,9637721-9637950,9638047-9638188,9638275-9638336,9638416-9638459	AT2G22670.3  CDS  gene_syn IAA8, INDOLEACETIC ACID-INDUCED PROTEIN 8, T9I22.11, T9I22_11  gene IAA8  function IAA8 (IAA8) gene is auxin inducible.  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process response to auxin stimulus|GO:0009733|12036262|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product IAA8; transcription factor  note IAA8; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to auxin stimulus; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA9 (INDOLE-3-ACETIC ACID INDUCIBLE 9); transcription factor (TAIR:AT5G65670.2); Has 1033 Blast hits to 1032 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1032; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G22670.3p  transcript_id AT2G22670.3  protein_id AT2G22670.3p  transcript_id AT2G22670.3  
At2g22670	chr2:009637136	0.0	W/9637136-9637623,9637721-9637950,9638047-9638188,9638275-9638336,9638422-9638459	AT2G22670.2  CDS  gene_syn IAA8, INDOLEACETIC ACID-INDUCED PROTEIN 8, T9I22.11, T9I22_11  gene IAA8  function IAA8 (IAA8) gene is auxin inducible.  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process response to auxin stimulus|GO:0009733|12036262|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product IAA8; transcription factor  note IAA8; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to auxin stimulus; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA9 (INDOLE-3-ACETIC ACID INDUCIBLE 9); transcription factor (TAIR:AT5G65670.1); Has 1002 Blast hits to 1001 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1001; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G22670.2p  transcript_id AT2G22670.2  protein_id AT2G22670.2p  transcript_id AT2G22670.2  
At2g22680	chr2:009645433	0.0	W/9645433-9647484	AT2G22680.1  CDS  gene_syn T9I22.12, T9I22_12  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: EDA40 (embryo sac development arrest 40); protein binding / ubiquitin-protein ligase/ zinc ion binding (TAIR:AT4G37890.2); Has 699 Blast hits to 698 proteins in 157 species: Archae - 2; Bacteria - 184; Metazoa - 117; Fungi - 77; Plants - 198; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).  protein_id AT2G22680.1p  transcript_id AT2G22680.1  protein_id AT2G22680.1p  transcript_id AT2G22680.1  
At2g22690	chr2:009649820	0.0	C/9649820-9650965	AT2G22690.1  CDS  gene_syn T9I22.13, T9I22_13  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), CT11-RanBPM (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G37880.1); Has 568 Blast hits to 564 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 291; Fungi - 136; Plants - 73; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT2G22690.1p  transcript_id AT2G22690.1  protein_id AT2G22690.1p  transcript_id AT2G22690.1  
At2g22690	chr2:009649820	0.0	C/9649820-9650965	AT2G22690.2  CDS  gene_syn T9I22.13, T9I22_13  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), CT11-RanBPM (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G37880.1); Has 568 Blast hits to 564 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 291; Fungi - 136; Plants - 73; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT2G22690.2p  transcript_id AT2G22690.2  protein_id AT2G22690.2p  transcript_id AT2G22690.2  
At2g22710	chr2:009651719	0.0	W/9651719-9654532	AT2G22710.1  mRNA_TE_gene  pseudo  gene_syn T9I22.15, T9I22_15  note Transposable element gene, similar to DNA binding [Arabidopsis thaliana] (TAIR:AT4G01980.1); similar to hypothetical protein 26.t00020 [Brassica oleracea] (GB:ABD65000.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)  
At2g22720	chr2:009657344	0.0	W/9657344-9657645,9657935-9657959,9658294-9658508,9658598-9658709,9658793-9658994,9659095-9659942,9660025-9660152,9660260-9660346,9660433-9660532	AT2G22720.2  CDS  gene_syn T9I22.16, T9I22_16  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chromatin SPT2 (InterPro:IPR013256); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37860.1); Has 34422 Blast hits to 21553 proteins in 958 species: Archae - 9; Bacteria - 2953; Metazoa - 16492; Fungi - 6405; Plants - 1061; Viruses - 320; Other Eukaryotes - 7182 (source: NCBI BLink).  protein_id AT2G22720.2p  transcript_id AT2G22720.2  protein_id AT2G22720.2p  transcript_id AT2G22720.2  
At2g22720	chr2:009658182	0.0	W/9658182-9658199,9658294-9658508,9658598-9658709,9658793-9658994,9659095-9659942,9660025-9660152,9660260-9660346,9660433-9660532	AT2G22720.3  CDS  gene_syn T9I22.16, T9I22_16  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chromatin SPT2 (InterPro:IPR013256); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37860.1); Has 34349 Blast hits to 21327 proteins in 952 species: Archae - 9; Bacteria - 3053; Metazoa - 16365; Fungi - 6337; Plants - 1046; Viruses - 325; Other Eukaryotes - 7214 (source: NCBI BLink).  protein_id AT2G22720.3p  transcript_id AT2G22720.3  protein_id AT2G22720.3p  transcript_id AT2G22720.3  
At2g22720	chr2:009659235	0.0	W/9659235-9659942,9660025-9660152,9660260-9660346,9660433-9660532	AT2G22720.1  CDS  gene_syn T9I22.16, T9I22_16  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chromatin SPT2 (InterPro:IPR013256); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37860.1); Has 18810 Blast hits to 9739 proteins in 609 species: Archae - 9; Bacteria - 1424; Metazoa - 8282; Fungi - 2696; Plants - 486; Viruses - 222; Other Eukaryotes - 5691 (source: NCBI BLink).  protein_id AT2G22720.1p  transcript_id AT2G22720.1  protein_id AT2G22720.1p  transcript_id AT2G22720.1  
At2g22730	chr2:009660964	0.0	W/9660964-9661112,9661375-9661506,9661644-9661745,9661855-9661944,9662042-9662117,9662200-9662274,9662351-9662453,9662677-9662764,9662835-9662932,9663023-9663099,9663183-9663296,9663363-9663482,9663579-9663707,9663793-9663972	AT2G22730.1  CDS  gene_syn T9I22.17, T9I22_17  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product transporter-related  note transporter-related; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: membrane protein-related (TAIR:AT5G64500.1); Has 10218 Blast hits to 10172 proteins in 1168 species: Archae - 175; Bacteria - 6868; Metazoa - 793; Fungi - 1188; Plants - 107; Viruses - 0; Other Eukaryotes - 1087 (source: NCBI BLink).  protein_id AT2G22730.1p  transcript_id AT2G22730.1  protein_id AT2G22730.1p  transcript_id AT2G22730.1  
At2g22740	chr2:009664256	0.0	C/9664256-9666628	AT2G22740.1  CDS  gene_syn SDG23, SET DOMAIN PROTEIN 23, SUVH6, T9I22.18, T9I22_18  gene SUVH6  function Encodes a SU(VAR)3-9 homolog, a methyltransferase involved in histone methylation. The protein was shown to bind to methylated cytosines of CG, CNG and CNN motifs but has a preference for the latter two. This is a member of a subfamily of SET proteins that shares a conserved SRA domain.  go_component nucleus|GO:0005634||IEA  go_process histone methylation|GO:0016571|15014946|IDA  go_function methyltransferase activity|GO:0008168|15014946|IDA  go_function methyl-CpG binding|GO:0008327|17239600|IDA  go_function methyl-CpNpG binding|GO:0010428|17239600|IDA  go_function methyl-CpNpN binding|GO:0010429|17239600|IDA  product SUVH6; methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding / methyltransferase  note SUVH6; FUNCTIONS IN: methyl-CpNpG binding, methyltransferase activity, methyl-CpG binding, methyl-CpNpN binding; INVOLVED IN: histone methylation; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), SRA-YDG (InterPro:IPR003105), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Pre-SET zinc-binding region (InterPro:IPR007728), Post-SET zinc-binding region (InterPro:IPR003616); BEST Arabidopsis thaliana protein match is: SUVH5 (SU(VAR)3-9 HOMOLOG 5); histone methyltransferase (TAIR:AT2G35160.1); Has 3609 Blast hits to 3455 proteins in 327 species: Archae - 0; Bacteria - 268; Metazoa - 1963; Fungi - 318; Plants - 592; Viruses - 0; Other Eukaryotes - 468 (source: NCBI BLink).  protein_id AT2G22740.1p  transcript_id AT2G22740.1  protein_id AT2G22740.1p  transcript_id AT2G22740.1  
At2g22740	chr2:009664256	0.0	C/9664256-9666628	AT2G22740.2  CDS  gene_syn SDG23, SET DOMAIN PROTEIN 23, SUVH6, T9I22.18, T9I22_18  gene SUVH6  function Encodes a SU(VAR)3-9 homolog, a methyltransferase involved in histone methylation. The protein was shown to bind to methylated cytosines of CG, CNG and CNN motifs but has a preference for the latter two. This is a member of a subfamily of SET proteins that shares a conserved SRA domain.  go_component nucleus|GO:0005634||IEA  go_process histone methylation|GO:0016571|15014946|IDA  go_function methyltransferase activity|GO:0008168|15014946|IDA  go_function methyl-CpG binding|GO:0008327|17239600|IDA  go_function methyl-CpNpG binding|GO:0010428|17239600|IDA  go_function methyl-CpNpN binding|GO:0010429|17239600|IDA  product SUVH6; methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding / methyltransferase  note SUVH6; FUNCTIONS IN: methyl-CpNpG binding, methyltransferase activity, methyl-CpG binding, methyl-CpNpN binding; INVOLVED IN: histone methylation; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), SRA-YDG (InterPro:IPR003105), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Pre-SET zinc-binding region (InterPro:IPR007728), Post-SET zinc-binding region (InterPro:IPR003616); BEST Arabidopsis thaliana protein match is: SUVH5 (SU(VAR)3-9 HOMOLOG 5); histone methyltransferase (TAIR:AT2G35160.1); Has 3609 Blast hits to 3455 proteins in 327 species: Archae - 0; Bacteria - 268; Metazoa - 1963; Fungi - 318; Plants - 592; Viruses - 0; Other Eukaryotes - 468 (source: NCBI BLink).  protein_id AT2G22740.2p  transcript_id AT2G22740.2  protein_id AT2G22740.2p  transcript_id AT2G22740.2  
At2g22750	chr2:009672145	0.0	W/9672145-9672606,9672984-9673364,9673550-9673624	AT2G22750.2  CDS  gene_syn T30L20.1, T30L20_1  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: sepal; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT4G37850.1); Has 1659 Blast hits to 1654 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 43; Fungi - 28; Plants - 1581; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT2G22750.2p  transcript_id AT2G22750.2  protein_id AT2G22750.2p  transcript_id AT2G22750.2  
At2g22750	chr2:009672145	0.0	W/9672145-9672606,9672984-9673364,9673553-9673624	AT2G22750.1  CDS  gene_syn T30L20.1, T30L20_1  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: sepal; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT4G37850.1); Has 1660 Blast hits to 1655 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 43; Fungi - 28; Plants - 1582; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT2G22750.1p  transcript_id AT2G22750.1  protein_id AT2G22750.1p  transcript_id AT2G22750.1  
At2g22760	chr2:009678012	0.0	W/9678012-9678452,9678591-9678968,9679097-9679165	AT2G22760.1  CDS  gene_syn T30L20.2, T30L20_2  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: root, cultured cell; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: NAI1; DNA binding / transcription factor (TAIR:AT2G22770.1); Has 1441 Blast hits to 1441 proteins in 105 species: Archae - 2; Bacteria - 0; Metazoa - 3; Fungi - 18; Plants - 1406; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT2G22760.1p  transcript_id AT2G22760.1  protein_id AT2G22760.1p  transcript_id AT2G22760.1  
At2g22770	chr2:009684858	0.0	W/9684858-9685337,9685725-9686138,9686253-9686321	AT2G22770.1  CDS  gene_syn NAI1, T30L20.3, T30L20_3  gene NAI1  function regulates the development of ER bodies. also involves in response to the endophytic fungus Piriformospora indica.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product NAI1; DNA binding / transcription factor  note NAI1; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT2G22760.1); Has 1994 Blast hits to 1994 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 48; Plants - 1814; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT2G22770.1p  transcript_id AT2G22770.1  protein_id AT2G22770.1p  transcript_id AT2G22770.1  
At2g22780	chr2:009691858	0.0	C/9691858-9691923,9691541-9691756,9690991-9691305,9690810-9690899,9690650-9690733,9690536-9690571,9690361-9690450,9690169-9690263,9689995-9690067	AT2G22780.1  CDS  gene_syn PEROXISOMAL NAD-MALATE DEHYDROGENASE 1, PMDH1, T30L20.4, T30L20_4  gene PMDH1  function encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.  go_component peroxisome|GO:0005777|12154131|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function malate dehydrogenase activity|GO:0016615||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_function L-malate dehydrogenase activity|GO:0030060||IEA  go_component peroxisome|GO:0005777|17376163|IDA  go_process regulation of fatty acid beta-oxidation|GO:0031998|17376163|IGI  go_process regulation of fatty acid beta-oxidation|GO:0031998|17376163|IMP  go_process regulation of photorespiration|GO:0080093|18685043|IMP  go_function malate dehydrogenase activity|GO:0016615||ISS  product PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1); L-malate dehydrogenase/ binding / catalytic/ malate dehydrogenase/ oxidoreductase/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor  note PEROXISOMAL NAD-MALATE DEHYDROGENASE 1 (PMDH1); FUNCTIONS IN: in 6 functions; INVOLVED IN: regulation of photorespiration, regulation of fatty acid beta-oxidation; LOCATED IN: chloroplast, peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Malate dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria (InterPro:IPR010097), NAD(P)-binding (InterPro:IPR016040), Lactate/malate dehydrogenase (InterPro:IPR001236), L-lactate/malate dehydrogenase (InterPro:IPR001557), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: PMDH2 (peroxisomal NAD-malate dehydrogenase 2); malate dehydrogenase (TAIR:AT5G09660.1); Has 10019 Blast hits to 10017 proteins in 2380 species: Archae - 175; Bacteria - 5580; Metazoa - 961; Fungi - 327; Plants - 604; Viruses - 0; Other Eukaryotes - 2372 (source: NCBI BLink).  protein_id AT2G22780.1p  transcript_id AT2G22780.1  protein_id AT2G22780.1p  transcript_id AT2G22780.1  
At2g22790	chr2:009695932	0.0	W/9695932-9696909	AT2G22790.1  CDS  gene_syn T30L20.5, T30L20_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G67020.1); Has 53 Blast hits to 53 proteins in 16 species: Archae - 0; Bacteria - 23; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G22790.1p  transcript_id AT2G22790.1  protein_id AT2G22790.1p  transcript_id AT2G22790.1  
At2g22795	chr2:009697380	0.0	C/9697380-9699584	AT2G22795.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37820.1); Has 742033 Blast hits to 185230 proteins in 3414 species: Archae - 3102; Bacteria - 91104; Metazoa - 304818; Fungi - 76748; Plants - 32809; Viruses - 4044; Other Eukaryotes - 229408 (source: NCBI BLink).  protein_id AT2G22795.1p  transcript_id AT2G22795.1  protein_id AT2G22795.1p  transcript_id AT2G22795.1  
At2g22800	chr2:009705638	0.0	C/9705638-9706048,9705454-9705533,9704949-9705282	AT2G22800.1  CDS  gene_syn HAT9, T30L20.6, TRANSCRIPTION FACTOR HAT9  gene HAT9  function Encodes homeobox protein HAT9.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product HAT9; DNA binding / transcription factor  note HAT9; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Homeodomain-like (InterPro:IPR009057), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: HAT22; transcription factor (TAIR:AT4G37790.1); Has 5421 Blast hits to 5407 proteins in 387 species: Archae - 0; Bacteria - 0; Metazoa - 3702; Fungi - 191; Plants - 1433; Viruses - 7; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT2G22800.1p  transcript_id AT2G22800.1  protein_id AT2G22800.1p  transcript_id AT2G22800.1  
At2g22802	chr2:009708750	0.0	C/9708750-9708848	AT2G22802.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G22802.1p  transcript_id AT2G22802.1  protein_id AT2G22802.1p  transcript_id AT2G22802.1  
At2g22805	chr2:009712291	0.0	W/9712291-9712360,9712811-9713001	AT2G22805.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G22807.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G22805.1p  transcript_id AT2G22805.1  protein_id AT2G22805.1p  transcript_id AT2G22805.1  
At2g22807	chr2:009715085	0.0	W/9715085-9715160,9715778-9715983	AT2G22807.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G22805.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G22807.1p  transcript_id AT2G22807.1  protein_id AT2G22807.1p  transcript_id AT2G22807.1  
At2g22810	chr2:009719326	0.0	C/9719326-9719472,9719092-9719223,9718864-9719024,9717791-9718775	AT2G22810.1  CDS  gene_syn 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE, 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 4, 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID SYNTHASE POLYPEPTIDE, ACC4, ACS4, ATACS4, T30L20.7  gene ACS4  function key regulatory enzyme in the biosynthesis of the plant hormone ethylene. ACS4 is specifically induced by indoleacetic acid (IAA).  go_component cellular_component|GO:0005575||ND  go_process ethylene biosynthetic process|GO:0009693|7642574|TAS  go_process response to auxin stimulus|GO:0009733|7642574|IEP  go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847|12968022|IDA  go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847|7642574|IDA  product ACS4 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 4); 1-aminocyclopropane-1-carboxylate synthase  note 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 4 (ACS4); FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate synthase activity; INVOLVED IN: response to auxin stimulus, ethylene biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot, cauline leaf, flower, root, leaf vein; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase, class I and II (InterPro:IPR004839), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: ACS8; 1-aminocyclopropane-1-carboxylate synthase (TAIR:AT4G37770.1); Has 17553 Blast hits to 17549 proteins in 1648 species: Archae - 473; Bacteria - 9752; Metazoa - 568; Fungi - 451; Plants - 912; Viruses - 0; Other Eukaryotes - 5397 (source: NCBI BLink).  protein_id AT2G22810.1p  transcript_id AT2G22810.1  protein_id AT2G22810.1p  transcript_id AT2G22810.1  
At2g22820	chr2:009721231	0.0	C/9721231-9721425	AT2G22820.1  CDS  gene_syn T30L20.8  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G22820.1p  transcript_id AT2G22820.1  protein_id AT2G22820.1p  transcript_id AT2G22820.1  
At2g22821	chr2:009721236	0.0	W/9721236-9721937	AT2G22821.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G22820  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G22821.1  
At2g22830	chr2:009725842	0.0	C/9725842-9726270,9725471-9725582,9725209-9725383,9724477-9725140,9724123-9724401,9723947-9724045	AT2G22830.1  CDS  gene_syn SQE2, T20K9.4, T20K9_4, squalene epoxidase 2  gene SQE2  go_component integral to membrane|GO:0016021||IEA  go_function squalene monooxygenase activity|GO:0004506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_process sterol biosynthetic process|GO:0016126|10350086|TAS  product SQE2 (squalene epoxidase 2); FAD binding / oxidoreductase/ squalene monooxygenase  note squalene epoxidase 2 (SQE2); FUNCTIONS IN: squalene monooxygenase activity, oxidoreductase activity, FAD binding; INVOLVED IN: sterol biosynthetic process; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Squalene epoxidase (InterPro:IPR013698), Aromatic-ring hydroxylase-like (InterPro:IPR003042), FAD dependent oxidoreductase (InterPro:IPR006076); BEST Arabidopsis thaliana protein match is: SQE3 (squalene epoxidase 3); squalene monooxygenase (TAIR:AT4G37760.1); Has 2006 Blast hits to 2006 proteins in 555 species: Archae - 27; Bacteria - 1017; Metazoa - 116; Fungi - 148; Plants - 85; Viruses - 0; Other Eukaryotes - 613 (source: NCBI BLink).  protein_id AT2G22830.1p  transcript_id AT2G22830.1  protein_id AT2G22830.1p  transcript_id AT2G22830.1  
At2g22840	chr2:009728841	0.0	W/9728841-9729168,9729332-9729544,9729790-9730162,9730463-9731141	AT2G22840.1  CDS  gene_syn AtGRF1, GROWTH-REGULATING FACTOR 1, T20K9.5, T20K9_5  gene AtGRF1  function Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Mutants result in smaller leaves indicating the role of the gene in leaf development. Expressed in root, shoot and flower  go_component nucleus|GO:0005634|12974814|ISS  go_process leaf development|GO:0048366|12974814|IGI  go_function transcription activator activity|GO:0016563|12974814|ISS  product AtGRF1 (GROWTH-REGULATING FACTOR 1); transcription activator  note GROWTH-REGULATING FACTOR 1 (AtGRF1); FUNCTIONS IN: transcription activator activity; INVOLVED IN: leaf development; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine-Leucine-Glutamine, QLQ (InterPro:IPR014978), WRC (InterPro:IPR014977); BEST Arabidopsis thaliana protein match is: AtGRF2 (GROWTHREGULATING FACTOR 2); transcription activator (TAIR:AT4G37740.1); Has 545 Blast hits to 493 proteins in 56 species: Archae - 0; Bacteria - 24; Metazoa - 88; Fungi - 17; Plants - 365; Viruses - 3; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT2G22840.1p  transcript_id AT2G22840.1  protein_id AT2G22840.1p  transcript_id AT2G22840.1  
At2g22850	chr2:009732601	0.0	C/9732601-9733284	AT2G22850.1  CDS  gene_syn Arabidopsis thaliana basic leucine-zipper 6, AtbZIP6, T20K9.6, T20K9_6  gene AtbZIP6  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634|16581911|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  product AtbZIP6 (Arabidopsis thaliana basic leucine-zipper 6); DNA binding / transcription factor  note Arabidopsis thaliana basic leucine-zipper 6 (AtbZIP6); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: AtbZIP7 (Arabidopsis thaliana basic leucine-zipper 7); DNA binding / transcription factor (TAIR:AT4G37730.1); Has 680 Blast hits to 680 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 10; Plants - 649; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT2G22850.1p  transcript_id AT2G22850.1  protein_id AT2G22850.1p  transcript_id AT2G22850.1  
At2g22860	chr2:009737666	0.0	W/9737666-9737788,9737937-9738077	AT2G22860.1  CDS  gene_syn ATPSK2, PHYTOSULFOKINE 2 PRECURSOR, T20K9.7, T20K9_7  gene ATPSK2  function Phytosulfokine 2 precursor, coding for a unique plant peptide growth factor.  go_function growth factor activity|GO:0008083||IEA  go_component extracellular matrix|GO:0031012|11706167|ISS  go_process cell proliferation|GO:0008283|11706167|ISS  go_process organ morphogenesis|GO:0009887|11706167|ISS  go_process cell differentiation|GO:0030154|11706167|ISS  product ATPSK2 (PHYTOSULFOKINE 2 PRECURSOR); growth factor  note PHYTOSULFOKINE 2 PRECURSOR (ATPSK2); FUNCTIONS IN: growth factor activity; INVOLVED IN: cell differentiation, cell proliferation, organ morphogenesis; LOCATED IN: extracellular matrix; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Phytosulfokine (InterPro:IPR009438); BEST Arabidopsis thaliana protein match is: ATPSK6 (PHYTOSULFOKINE 6 PRECURSOR); growth factor (TAIR:AT4G37720.1); Has 82 Blast hits to 82 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G22860.1p  transcript_id AT2G22860.1  protein_id AT2G22860.1p  transcript_id AT2G22860.1  
At2g22870	chr2:009739476	0.0	W/9739476-9739935,9740029-9740098,9740462-9740624,9740712-9740921	AT2G22870.1  CDS  gene_syn EMB2001, T20K9.8, T20K9_8, embryo defective 2001  gene EMB2001  go_component intracellular|GO:0005622||IEA  go_function GTP binding|GO:0005525||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product EMB2001 (embryo defective 2001); GTP binding  note embryo defective 2001 (EMB2001); FUNCTIONS IN: GTP binding; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding (InterPro:IPR005289), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: GTP binding (TAIR:AT5G11480.1); Has 4887 Blast hits to 4863 proteins in 1386 species: Archae - 66; Bacteria - 3072; Metazoa - 78; Fungi - 135; Plants - 90; Viruses - 0; Other Eukaryotes - 1446 (source: NCBI BLink).  protein_id AT2G22870.1p  transcript_id AT2G22870.1  protein_id AT2G22870.1p  transcript_id AT2G22870.1  
At2g22880	chr2:009741119	0.0	C/9741119-9741463	AT2G22880.1  CDS  gene_syn T20K9.9, T20K9_9  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product VQ motif-containing protein  note VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, LP.12 twelve leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT4G37710.1); Has 17 Blast hits to 17 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G22880.1p  transcript_id AT2G22880.1  protein_id AT2G22880.1p  transcript_id AT2G22880.1  
At2g22890	chr2:009742500	0.0	C/9742500-9743339	AT2G22890.1  CDS  gene_syn T20K9.10, T20K9_10  go_component chloroplast|GO:0009507||IEA  go_process post-translational protein modification|GO:0043687||IEA  go_process regulation of protein metabolic process|GO:0051246||IEA  go_function small conjugating protein ligase activity|GO:0019787||IEA  product small conjugating protein ligase  note small conjugating protein ligase; FUNCTIONS IN: small conjugating protein ligase activity; INVOLVED IN: regulation of protein metabolic process, post-translational protein modification; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: small conjugating protein ligase (TAIR:AT4G27030.1); Has 179 Blast hits to 179 proteins in 75 species: Archae - 0; Bacteria - 19; Metazoa - 108; Fungi - 0; Plants - 24; Viruses - 3; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT2G22890.1p  transcript_id AT2G22890.1  protein_id AT2G22890.1p  transcript_id AT2G22890.1  
At2g22900	chr2:009745407	0.0	C/9745407-9746193,9744359-9744921	AT2G22900.1  CDS  gene_syn T20K9.11  go_function transferase activity, transferring hexosyl groups|GO:0016758||IEA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product galactosyl transferase GMA12/MNN10 family protein  note galactosyl transferase GMA12/MNN10 family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Galactosyl transferase (InterPro:IPR008630); BEST Arabidopsis thaliana protein match is: galactosyl transferase GMA12/MNN10 family protein (TAIR:AT4G37690.1); Has 296 Blast hits to 296 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 102; Plants - 174; Viruses - 2; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT2G22900.1p  transcript_id AT2G22900.1  protein_id AT2G22900.1p  transcript_id AT2G22900.1  
At2g22905	chr2:009748955	0.0	W/9748955-9749380	AT2G22905.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Expressed protein  note Expressed protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G22905.1p  transcript_id AT2G22905.1  protein_id AT2G22905.1p  transcript_id AT2G22905.1  
At2g22910	chr2:009749988	0.0	W/9749988-9750332,9750573-9750660,9750850-9751058,9751137-9751288,9751384-9751816,9751884-9751981,9752061-9752172,9752262-9752421,9752505-9752737	AT2G22910.1  CDS  gene_syn T20K9.12, T20K9_12  go_component cytoplasm|GO:0005737||IEA  go_process arginine biosynthetic process|GO:0006526||IEA  go_process metabolic process|GO:0008152||IEA  go_process amino acid biosynthetic process|GO:0008652||IEA  go_function amino-acid N-acetyltransferase activity|GO:0004042||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_process arginine biosynthetic process|GO:0006526||ISS  go_function amino-acid N-acetyltransferase activity|GO:0004042||ISS  product GCN5-related N-acetyltransferase (GNAT) family protein / amino acid kinase family protein  note GCN5-related N-acetyltransferase (GNAT) family protein / amino acid kinase family protein; FUNCTIONS IN: amino-acid N-acetyltransferase activity, N-acetyltransferase activity; INVOLVED IN: arginine biosynthetic process, amino acid biosynthetic process, metabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Aspartate/glutamate/uridylate kinase (InterPro:IPR001048), Acyl-CoA N-acyltransferase (InterPro:IPR016181), Amino-acid N-acetyltransferase (ArgA) (InterPro:IPR010167); BEST Arabidopsis thaliana protein match is: GCN5-related N-acetyltransferase (GNAT) family protein / amino acid kinase family protein (TAIR:AT4G37670.2); Has 5131 Blast hits to 4243 proteins in 1058 species: Archae - 94; Bacteria - 3747; Metazoa - 0; Fungi - 93; Plants - 72; Viruses - 0; Other Eukaryotes - 1125 (source: NCBI BLink).  protein_id AT2G22910.1p  transcript_id AT2G22910.1  protein_id AT2G22910.1p  transcript_id AT2G22910.1  
At2g22920	chr2:009753938	0.0	W/9753938-9754062,9754141-9754286,9754366-9754442,9754516-9754638,9755093-9755195,9755279-9755316,9755522-9755623,9755759-9755845,9755966-9756034,9756176-9756247,9756349-9756473,9756976-9757089,9757204-9757249,9757340-9757420	AT2G22920.2  CDS  gene_syn SCPL12, SERINE CARBOXYPEPTIDASE-LIKE 12, T20K9.13, T20K9_13  gene SCPL12  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product serine carboxypeptidase S10 family protein  note SERINE CARBOXYPEPTIDASE-LIKE 12 (SCPL12); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plant-type cell wall; EXPRESSED IN: stem, inflorescence meristem, hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase S10 family protein (TAIR:AT2G22970.1); Has 2831 Blast hits to 2751 proteins in 345 species: Archae - 0; Bacteria - 368; Metazoa - 578; Fungi - 550; Plants - 987; Viruses - 0; Other Eukaryotes - 348 (source: NCBI BLink).  protein_id AT2G22920.2p  transcript_id AT2G22920.2  protein_id AT2G22920.2p  transcript_id AT2G22920.2  
At2g22920	chr2:009753938	0.0	W/9753938-9754062,9754141-9754286,9754366-9754442,9754516-9754638,9755093-9755195,9755279-9755316,9755522-9755623,9755759-9755845,9755966-9756034,9756176-9756247,9756349-9756473,9756976-9757111,9757204-9757227	AT2G22920.1  CDS  gene_syn SCPL12, SERINE CARBOXYPEPTIDASE-LIKE 12, T20K9.13, T20K9_13  gene SCPL12  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product serine carboxypeptidase S10 family protein  note SERINE CARBOXYPEPTIDASE-LIKE 12 (SCPL12); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plant-type cell wall; EXPRESSED IN: stem, inflorescence meristem, hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase S10 family protein (TAIR:AT2G22970.3); Has 2802 Blast hits to 2736 proteins in 345 species: Archae - 0; Bacteria - 368; Metazoa - 562; Fungi - 548; Plants - 983; Viruses - 0; Other Eukaryotes - 341 (source: NCBI BLink).  protein_id AT2G22920.1p  transcript_id AT2G22920.1  protein_id AT2G22920.1p  transcript_id AT2G22920.1  
At2g22930	chr2:009759766	0.0	W/9759766-9761094	AT2G22930.1  CDS  gene_syn T20K9.14, T20K9_14  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyltransferase family protein  note glycosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: glycosyltransferase family protein (TAIR:AT4G09500.2); Has 2880 Blast hits to 2859 proteins in 178 species: Archae - 0; Bacteria - 16; Metazoa - 306; Fungi - 6; Plants - 2542; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT2G22930.1p  transcript_id AT2G22930.1  protein_id AT2G22930.1p  transcript_id AT2G22930.1  
At2g22941	chr2:009762105	0.0	W/9762105-9762168,9762259-9762443	AT2G22941.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||IEA  product unknown protein  note INVOLVED IN: defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G22805.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G22941.1p  transcript_id AT2G22941.1  protein_id AT2G22941.1p  transcript_id AT2G22941.1  
At2g22940	chr2:009763249	0.0	C/9763249-9763462,9761655-9761746	AT2G22940.1  CDS  gene_syn T20K9.15, T20K9_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G45560.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G22940.1p  transcript_id AT2G22940.1  protein_id AT2G22940.1p  transcript_id AT2G22940.1  
At2g22942	chr2:009764462	0.0	C/9764462-9764563,9764233-9764337,9763814-9763936	AT2G22942.1  CDS  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell proliferation|GO:0008283||IEA  go_function growth factor activity|GO:0008083||IEA  product growth factor  note growth factor; FUNCTIONS IN: growth factor activity; INVOLVED IN: cell proliferation; LOCATED IN: endomembrane system, extracellular region; CONTAINS InterPro DOMAIN/s: Phytosulfokine (InterPro:IPR009438); Has 9 Blast hits to 9 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G22942.1p  transcript_id AT2G22942.1  protein_id AT2G22942.1p  transcript_id AT2G22942.1  
At2g22950	chr2:009766127	0.0	W/9766127-9766300,9766421-9766475,9766583-9768531,9768607-9768765,9768839-9769010,9769118-9769416,9769527-9769766	AT2G22950.1  CDS  gene_syn T20K9.16, T20K9_16  go_component membrane|GO:0016020||IEA  go_process ATP biosynthetic process|GO:0006754||IEA  go_process cation transport|GO:0006812||IEA  go_process calcium ion transport|GO:0006816||IEA  go_process metabolic process|GO:0008152||IEA  go_function calcium-transporting ATPase activity|GO:0005388|12805592|ISS  go_function calcium-transporting ATPase activity|GO:0005388||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  product calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7)  note calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7); FUNCTIONS IN: calmodulin binding, calcium-transporting ATPase activity; INVOLVED IN: calcium ion transport, cation transport, metabolic process, ATP biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, calcium-transporting, PMCA-type (InterPro:IPR006408), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068); BEST Arabidopsis thaliana protein match is: ACA2 (CALCIUM ATPASE 2); calcium ion transmembrane transporter/ calcium-transporting ATPase/ calmodulin binding (TAIR:AT4G37640.1); Has 26039 Blast hits to 19825 proteins in 1836 species: Archae - 536; Bacteria - 15888; Metazoa - 3406; Fungi - 1824; Plants - 1134; Viruses - 3; Other Eukaryotes - 3248 (source: NCBI BLink).  protein_id AT2G22950.1p  transcript_id AT2G22950.1  protein_id AT2G22950.1p  transcript_id AT2G22950.1  
At2g22955	chr2:009770700	0.0	C/9770700-9771553	AT2G22955.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G22960  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G22955.1  
At2g22960	chr2:009770894	0.0	W/9770894-9771021,9771282-9771295,9771543-9771595,9772306-9772424,9772496-9772609,9772716-9772765,9772856-9772932	AT2G22960.1  CDS  gene_syn T20K9.21  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product serine carboxypeptidase S10 family protein  note serine carboxypeptidase S10 family protein; FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, sepal, flower, carpel; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: SNG1 (SINAPOYLGLUCOSE 1); serine-type carboxypeptidase/ sinapoylglucose-malate O-sinapoyltransferase (TAIR:AT2G22990.5); Has 1040 Blast hits to 902 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 32; Plants - 782; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT2G22960.1p  transcript_id AT2G22960.1  protein_id AT2G22960.1p  transcript_id AT2G22960.1  
At2g22970	chr2:009774875	0.0	W/9774875-9774999,9775074-9775219,9775320-9775396,9775477-9775599,9776004-9776106,9776175-9776212,9776418-9776516,9776618-9776704,9776797-9776865,9777051-9777122,9777203-9777324,9777785-9777898,9778011-9778056,9778144-9778224	AT2G22970.1  CDS  gene_syn SCPL11, SERINE CARBOXYPEPTIDASE-LIKE 11, T20K9.19  gene SCPL11  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product serine carboxypeptidase S10 family protein  note SERINE CARBOXYPEPTIDASE-LIKE 11 (SCPL11); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase S10 family protein (TAIR:AT2G22920.2); Has 2744 Blast hits to 2674 proteins in 326 species: Archae - 0; Bacteria - 303; Metazoa - 573; Fungi - 552; Plants - 983; Viruses - 0; Other Eukaryotes - 333 (source: NCBI BLink).  protein_id AT2G22970.1p  transcript_id AT2G22970.1  protein_id AT2G22970.1p  transcript_id AT2G22970.1  
At2g22970	chr2:009774875	0.0	W/9774875-9774999,9775074-9775219,9775320-9775396,9775477-9775599,9776004-9776106,9776175-9776212,9776418-9776516,9776618-9776704,9776797-9776865,9777051-9777122,9777203-9777324,9777785-9777898,9778011-9778060,9778149-9778255	AT2G22970.3  CDS  gene_syn SCPL11, SERINE CARBOXYPEPTIDASE-LIKE 11, T20K9.19  gene SCPL11  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product serine carboxypeptidase S10 family protein  note SERINE CARBOXYPEPTIDASE-LIKE 11 (SCPL11); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase S10 family protein (TAIR:AT2G22920.2); Has 2721 Blast hits to 2662 proteins in 326 species: Archae - 0; Bacteria - 303; Metazoa - 562; Fungi - 550; Plants - 980; Viruses - 0; Other Eukaryotes - 326 (source: NCBI BLink).  protein_id AT2G22970.3p  transcript_id AT2G22970.3  protein_id AT2G22970.3p  transcript_id AT2G22970.3  
At2g22970	chr2:009774875	0.0	W/9774875-9774999,9775074-9775219,9775320-9775396,9775477-9775599,9776004-9776106,9776175-9776212,9776418-9776516,9776618-9776704,9776797-9776865,9777051-9777146	AT2G22970.2  CDS  gene_syn SCPL11, SERINE CARBOXYPEPTIDASE-LIKE 11, T20K9.19  gene SCPL11  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product serine carboxypeptidase S10 family protein  note SERINE CARBOXYPEPTIDASE-LIKE 11 (SCPL11); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase S10 family protein (TAIR:AT2G22920.2); Has 2647 Blast hits to 2611 proteins in 325 species: Archae - 0; Bacteria - 303; Metazoa - 552; Fungi - 548; Plants - 927; Viruses - 0; Other Eukaryotes - 317 (source: NCBI BLink).  protein_id AT2G22970.2p  transcript_id AT2G22970.2  protein_id AT2G22970.2p  transcript_id AT2G22970.2  
At2g22980	chr2:009779029	0.0	W/9779029-9779156,9779239-9779384,9779451-9779527,9779607-9779729,9780041-9780143,9780245-9780267,9780351-9780452,9780817-9780903,9780991-9781059,9781166-9781237,9782048-9782169,9782629-9782742,9782846-9782891,9782998-9783078	AT2G22980.1  CDS  gene_syn SCPL13, SERINE CARBOXYPEPTIDASE-LIKE 13, T20K9.20  gene SCPL13  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product serine-type carboxypeptidase  note SERINE CARBOXYPEPTIDASE-LIKE 13 (SCPL13); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase S10 family protein (TAIR:AT2G22970.1); Has 2841 Blast hits to 2782 proteins in 360 species: Archae - 0; Bacteria - 384; Metazoa - 574; Fungi - 552; Plants - 973; Viruses - 0; Other Eukaryotes - 358 (source: NCBI BLink).  protein_id AT2G22980.1p  transcript_id AT2G22980.1  protein_id AT2G22980.1p  transcript_id AT2G22980.1  
At2g22980	chr2:009779029	0.0	W/9779029-9779156,9779239-9779384,9779451-9779527,9779607-9779729,9780041-9780143,9780245-9780267,9780351-9780452,9780817-9780903,9780991-9781059,9781166-9781237,9782048-9782169,9782629-9782742,9782846-9782895,9783003-9783088	AT2G22980.4  CDS  gene_syn SCPL13, SERINE CARBOXYPEPTIDASE-LIKE 13, T20K9.20  gene SCPL13  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product serine-type carboxypeptidase  note SERINE CARBOXYPEPTIDASE-LIKE 13 (SCPL13); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase S10 family protein (TAIR:AT2G22970.3); Has 2813 Blast hits to 2764 proteins in 360 species: Archae - 0; Bacteria - 384; Metazoa - 564; Fungi - 548; Plants - 966; Viruses - 0; Other Eukaryotes - 351 (source: NCBI BLink).  protein_id AT2G22980.4p  transcript_id AT2G22980.4  protein_id AT2G22980.4p  transcript_id AT2G22980.4  
At2g22980	chr2:009779029	0.0	W/9779029-9779156,9779239-9779384,9779451-9779527,9779607-9779729,9780041-9780143,9780245-9780267,9780351-9780452,9780817-9780903,9780991-9781059,9781166-9781237,9782048-9782169,9782629-9782742,9782846-9782915	AT2G22980.2  CDS  gene_syn SCPL13, SERINE CARBOXYPEPTIDASE-LIKE 13, T20K9.20  gene SCPL13  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product serine-type carboxypeptidase  note SERINE CARBOXYPEPTIDASE-LIKE 13 (SCPL13); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase S10 family protein (TAIR:AT2G22970.3); Has 2814 Blast hits to 2764 proteins in 360 species: Archae - 0; Bacteria - 384; Metazoa - 564; Fungi - 548; Plants - 966; Viruses - 0; Other Eukaryotes - 352 (source: NCBI BLink).  protein_id AT2G22980.2p  transcript_id AT2G22980.2  protein_id AT2G22980.2p  transcript_id AT2G22980.2  
At2g22980	chr2:009779029	0.0	W/9779029-9779156,9779239-9779384,9779451-9779533,9779607-9779729,9780041-9780143,9780245-9780267,9780351-9780452,9780817-9780903,9780991-9781059,9781166-9781237,9782048-9782169,9782629-9782742,9782846-9782891,9782998-9783078	AT2G22980.3  CDS  gene_syn SCPL13, SERINE CARBOXYPEPTIDASE-LIKE 13, T20K9.20  gene SCPL13  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product serine-type carboxypeptidase  note SERINE CARBOXYPEPTIDASE-LIKE 13 (SCPL13); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase S10 family protein (TAIR:AT2G22970.1); Has 2738 Blast hits to 2680 proteins in 339 species: Archae - 0; Bacteria - 295; Metazoa - 572; Fungi - 548; Plants - 972; Viruses - 0; Other Eukaryotes - 351 (source: NCBI BLink).  protein_id AT2G22980.3p  transcript_id AT2G22980.3  protein_id AT2G22980.3p  transcript_id AT2G22980.3  
At2g22990	chr2:009786393	0.0	W/9786393-9786511,9786583-9786728,9786865-9786941,9787071-9787190,9787445-9787547,9787644-9787681,9787777-9787878,9788310-9788396,9788488-9788565,9788765-9788836,9788915-9789033,9789478-9789591,9789701-9789746,9789845-9789925	AT2G22990.1  CDS  gene_syn MALATE SINAPOYLTRANSFERASE, SCPL8, SERINE CARBOXYPEPTIDASE-LIKE 8, SINAPOYLGLUCOSE 1, SNG1, T20K9.18  gene SNG1  function sinapoylglucose:malate sinapoyltransferase. Catalyzes the formation of sinapoylmalate from sinapoylglucose. Mutants accumulate excess sinapoylglucose.  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||ISS  go_process phenylpropanoid metabolic process|GO:0009698|10948250|IDA  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  go_function sinapoylglucose-malate O-sinapoyltransferase activity|GO:0016754|10948250|IDA  product SNG1 (SINAPOYLGLUCOSE 1); serine-type carboxypeptidase/ sinapoylglucose-malate O-sinapoyltransferase  note SINAPOYLGLUCOSE 1 (SNG1); FUNCTIONS IN: sinapoylglucose-malate O-sinapoyltransferase activity, serine-type carboxypeptidase activity; INVOLVED IN: phenylpropanoid metabolic process, proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase S10 family protein (TAIR:AT2G23010.1); Has 2805 Blast hits to 2742 proteins in 348 species: Archae - 0; Bacteria - 343; Metazoa - 576; Fungi - 556; Plants - 974; Viruses - 0; Other Eukaryotes - 356 (source: NCBI BLink).  protein_id AT2G22990.1p  transcript_id AT2G22990.1  protein_id AT2G22990.1p  transcript_id AT2G22990.1  
At2g22990	chr2:009786393	0.0	W/9786393-9786511,9786583-9786728,9786865-9786941,9787071-9787190,9787445-9787547,9787644-9787681,9787777-9787878,9788310-9788396,9788488-9788565,9788765-9788836,9788915-9789033,9789478-9789591,9789701-9789750,9789845-9789870	AT2G22990.4  CDS  gene_syn MALATE SINAPOYLTRANSFERASE, SCPL8, SERINE CARBOXYPEPTIDASE-LIKE 8, SINAPOYLGLUCOSE 1, SNG1, T20K9.18  gene SNG1  function sinapoylglucose:malate sinapoyltransferase. Catalyzes the formation of sinapoylmalate from sinapoylglucose. Mutants accumulate excess sinapoylglucose.  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||ISS  go_process phenylpropanoid metabolic process|GO:0009698|10948250|IDA  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  go_function sinapoylglucose-malate O-sinapoyltransferase activity|GO:0016754|10948250|IDA  product SNG1 (SINAPOYLGLUCOSE 1); serine-type carboxypeptidase/ sinapoylglucose-malate O-sinapoyltransferase  note SINAPOYLGLUCOSE 1 (SNG1); FUNCTIONS IN: sinapoylglucose-malate O-sinapoyltransferase activity, serine-type carboxypeptidase activity; INVOLVED IN: phenylpropanoid metabolic process, proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase S10 family protein (TAIR:AT2G23010.2); Has 2778 Blast hits to 2723 proteins in 348 species: Archae - 0; Bacteria - 343; Metazoa - 563; Fungi - 552; Plants - 969; Viruses - 0; Other Eukaryotes - 351 (source: NCBI BLink).  protein_id AT2G22990.4p  transcript_id AT2G22990.4  protein_id AT2G22990.4p  transcript_id AT2G22990.4  
At2g22990	chr2:009786393	0.0	W/9786393-9786511,9786583-9786728,9786865-9786941,9787071-9787190,9787445-9787547,9787644-9787681,9787777-9787878,9788310-9788396,9788488-9788565,9788765-9788836,9788915-9789033,9789478-9789591,9789701-9789752,9789849-9789998	AT2G22990.3  CDS  gene_syn MALATE SINAPOYLTRANSFERASE, SCPL8, SERINE CARBOXYPEPTIDASE-LIKE 8, SINAPOYLGLUCOSE 1, SNG1, T20K9.18  gene SNG1  function sinapoylglucose:malate sinapoyltransferase. Catalyzes the formation of sinapoylmalate from sinapoylglucose. Mutants accumulate excess sinapoylglucose.  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||ISS  go_process phenylpropanoid metabolic process|GO:0009698|10948250|IDA  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  go_function sinapoylglucose-malate O-sinapoyltransferase activity|GO:0016754|10948250|IDA  product SNG1 (SINAPOYLGLUCOSE 1); serine-type carboxypeptidase/ sinapoylglucose-malate O-sinapoyltransferase  note SINAPOYLGLUCOSE 1 (SNG1); FUNCTIONS IN: sinapoylglucose-malate O-sinapoyltransferase activity, serine-type carboxypeptidase activity; INVOLVED IN: phenylpropanoid metabolic process, proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase S10 family protein (TAIR:AT2G23010.2); Has 2780 Blast hits to 2725 proteins in 348 species: Archae - 0; Bacteria - 343; Metazoa - 565; Fungi - 552; Plants - 969; Viruses - 0; Other Eukaryotes - 351 (source: NCBI BLink).  protein_id AT2G22990.3p  transcript_id AT2G22990.3  protein_id AT2G22990.3p  transcript_id AT2G22990.3  
At2g22990	chr2:009786393	0.0	W/9786393-9786511,9786583-9786728,9786865-9786941,9787098-9787190,9787445-9787547,9787644-9787681,9787777-9787878,9788310-9788396,9788488-9788565,9788765-9788836,9788915-9789033,9789478-9789591,9789701-9789750,9789849-9789925	AT2G22990.5  CDS  gene_syn MALATE SINAPOYLTRANSFERASE, SCPL8, SERINE CARBOXYPEPTIDASE-LIKE 8, SINAPOYLGLUCOSE 1, SNG1, T20K9.18  gene SNG1  function sinapoylglucose:malate sinapoyltransferase. Catalyzes the formation of sinapoylmalate from sinapoylglucose. Mutants accumulate excess sinapoylglucose.  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||ISS  go_process phenylpropanoid metabolic process|GO:0009698|10948250|IDA  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  go_function sinapoylglucose-malate O-sinapoyltransferase activity|GO:0016754|10948250|IDA  product SNG1 (SINAPOYLGLUCOSE 1); serine-type carboxypeptidase/ sinapoylglucose-malate O-sinapoyltransferase  note SINAPOYLGLUCOSE 1 (SNG1); FUNCTIONS IN: sinapoylglucose-malate O-sinapoyltransferase activity, serine-type carboxypeptidase activity; INVOLVED IN: phenylpropanoid metabolic process, proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase S10 family protein (TAIR:AT2G23010.2); Has 2521 Blast hits to 2460 proteins in 284 species: Archae - 0; Bacteria - 187; Metazoa - 570; Fungi - 542; Plants - 963; Viruses - 0; Other Eukaryotes - 259 (source: NCBI BLink).  protein_id AT2G22990.5p  transcript_id AT2G22990.5  protein_id AT2G22990.5p  transcript_id AT2G22990.5  
At2g22990	chr2:009787071	0.0	W/9787071-9787190,9787445-9787547,9787644-9787681,9787777-9787878,9788310-9788396,9788488-9788565,9788765-9788836,9788915-9789033,9789478-9789591,9789701-9789746,9789845-9789925	AT2G22990.6  CDS  gene_syn MALATE SINAPOYLTRANSFERASE, SCPL8, SERINE CARBOXYPEPTIDASE-LIKE 8, SINAPOYLGLUCOSE 1, SNG1, T20K9.18  gene SNG1  function sinapoylglucose:malate sinapoyltransferase. Catalyzes the formation of sinapoylmalate from sinapoylglucose. Mutants accumulate excess sinapoylglucose.  go_process proteolysis|GO:0006508||ISS  go_process phenylpropanoid metabolic process|GO:0009698|10948250|IDA  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  go_function sinapoylglucose-malate O-sinapoyltransferase activity|GO:0016754|10948250|IDA  product SNG1 (SINAPOYLGLUCOSE 1); serine-type carboxypeptidase/ sinapoylglucose-malate O-sinapoyltransferase  note SINAPOYLGLUCOSE 1 (SNG1); FUNCTIONS IN: sinapoylglucose-malate O-sinapoyltransferase activity, serine-type carboxypeptidase activity; INVOLVED IN: phenylpropanoid metabolic process, proteolysis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase S10 family protein (TAIR:AT2G23010.1).  protein_id AT2G22990.6p  transcript_id AT2G22990.6  protein_id AT2G22990.6p  transcript_id AT2G22990.6  
At2g22990	chr2:009787071	0.0	W/9787071-9787190,9787445-9787547,9787644-9787681,9787777-9787878,9788310-9788396,9788488-9788565,9788765-9788836,9788915-9789033,9789478-9789591,9789701-9789750,9789849-9789925	AT2G22990.2  CDS  gene_syn MALATE SINAPOYLTRANSFERASE, SCPL8, SERINE CARBOXYPEPTIDASE-LIKE 8, SINAPOYLGLUCOSE 1, SNG1, T20K9.18  gene SNG1  function sinapoylglucose:malate sinapoyltransferase. Catalyzes the formation of sinapoylmalate from sinapoylglucose. Mutants accumulate excess sinapoylglucose.  go_process proteolysis|GO:0006508||ISS  go_process phenylpropanoid metabolic process|GO:0009698|10948250|IDA  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  go_function sinapoylglucose-malate O-sinapoyltransferase activity|GO:0016754|10948250|IDA  product SNG1 (SINAPOYLGLUCOSE 1); serine-type carboxypeptidase/ sinapoylglucose-malate O-sinapoyltransferase  note SINAPOYLGLUCOSE 1 (SNG1); FUNCTIONS IN: sinapoylglucose-malate O-sinapoyltransferase activity, serine-type carboxypeptidase activity; INVOLVED IN: phenylpropanoid metabolic process, proteolysis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase S10 family protein (TAIR:AT2G23010.2); Has 2025 Blast hits to 1971 proteins in 208 species: Archae - 0; Bacteria - 28; Metazoa - 536; Fungi - 328; Plants - 920; Viruses - 0; Other Eukaryotes - 213 (source: NCBI BLink).  protein_id AT2G22990.2p  transcript_id AT2G22990.2  protein_id AT2G22990.2p  transcript_id AT2G22990.2  
At2g23000	chr2:009792284	0.0	W/9792284-9792408,9792495-9792640,9792718-9792794,9792880-9792999,9793270-9793372,9793462-9793499,9793595-9793696,9793878-9793964,9794056-9794139,9794338-9794409,9794524-9794642,9795314-9795427,9795523-9795568,9795661-9795741	AT2G23000.1  CDS  gene_syn F21P24.6, F21P24_6, scpl10, serine carboxypeptidase-like 10  gene scpl10  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl10 (serine carboxypeptidase-like 10); serine-type carboxypeptidase  note serine carboxypeptidase-like 10 (scpl10); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: SNG1 (SINAPOYLGLUCOSE 1); serine-type carboxypeptidase/ sinapoylglucose-malate O-sinapoyltransferase (TAIR:AT2G22990.1); Has 2826 Blast hits to 2755 proteins in 342 species: Archae - 0; Bacteria - 353; Metazoa - 569; Fungi - 556; Plants - 989; Viruses - 0; Other Eukaryotes - 359 (source: NCBI BLink).  protein_id AT2G23000.1p  transcript_id AT2G23000.1  protein_id AT2G23000.1p  transcript_id AT2G23000.1  
At2g23010	chr2:009798843	0.0	W/9798843-9798967,9799059-9799204,9799282-9799358,9799440-9799559,9799873-9799975,9800065-9800102,9800171-9800272,9800418-9800504,9800598-9800681,9801297-9801368,9801500-9801618,9802068-9802181,9802272-9802317,9802405-9802485	AT2G23010.1  CDS  gene_syn F21P24.7, F21P24_7, SCPL9, SERINE CARBOXYPEPTIDASE-LIKE 9  gene SCPL9  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product serine carboxypeptidase S10 family protein  note SERINE CARBOXYPEPTIDASE-LIKE 9 (SCPL9); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: SNG1 (SINAPOYLGLUCOSE 1); serine-type carboxypeptidase/ sinapoylglucose-malate O-sinapoyltransferase (TAIR:AT2G22990.1); Has 2798 Blast hits to 2743 proteins in 345 species: Archae - 0; Bacteria - 346; Metazoa - 571; Fungi - 554; Plants - 970; Viruses - 0; Other Eukaryotes - 357 (source: NCBI BLink).  protein_id AT2G23010.1p  transcript_id AT2G23010.1  protein_id AT2G23010.1p  transcript_id AT2G23010.1  
At2g23010	chr2:009798843	0.0	W/9798843-9798967,9799059-9799204,9799282-9799358,9799440-9799559,9799873-9799975,9800065-9800102,9800171-9800272,9800418-9800504,9800598-9800681,9801297-9801368,9801500-9801618,9802068-9802181,9802272-9802321,9802409-9802485	AT2G23010.2  CDS  gene_syn F21P24.7, F21P24_7, SCPL9, SERINE CARBOXYPEPTIDASE-LIKE 9  gene SCPL9  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product serine carboxypeptidase S10 family protein  note SERINE CARBOXYPEPTIDASE-LIKE 9 (SCPL9); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: SNG1 (SINAPOYLGLUCOSE 1); serine-type carboxypeptidase/ sinapoylglucose-malate O-sinapoyltransferase (TAIR:AT2G22990.1); Has 2794 Blast hits to 2743 proteins in 345 species: Archae - 0; Bacteria - 346; Metazoa - 567; Fungi - 554; Plants - 970; Viruses - 0; Other Eukaryotes - 357 (source: NCBI BLink).  protein_id AT2G23010.2p  transcript_id AT2G23010.2  protein_id AT2G23010.2p  transcript_id AT2G23010.2  
At2g23020	chr2:009803217	0.0	C/9803217-9803288	AT2G23020.1  tRNA  gene_syn 22741.TRNA-MET-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Met (anticodon: CAT)  transcript_id AT2G23020.1  
At2g23030	chr2:009806484	0.0	C/9806484-9806603,9806307-9806381,9805980-9806081,9805761-9805814,9805576-9805668,9805381-9805473,9804342-9804446,9804161-9804259,9803753-9804031	AT2G23030.1  CDS  gene_syn F21P24.9, F21P24_9, SNF1-RELATED PROTEIN KINASE 2.9, SNRK2-9, SNRK2.9, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-9  gene SNRK2.9  function encodes a member of SNF1-related protein kinases (SnRK2)  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process response to osmotic stress|GO:0006970||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product SNRK2.9 (SNF1-RELATED PROTEIN KINASE 2.9); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note SNF1-RELATED PROTEIN KINASE 2.9 (SNRK2.9); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, response to osmotic stress; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Plant protein serine/threonine kinase-like (InterPro:IPR015740), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5); kinase (TAIR:AT5G63650.1); Has 82745 Blast hits to 81482 proteins in 1886 species: Archae - 47; Bacteria - 7163; Metazoa - 35765; Fungi - 7989; Plants - 15204; Viruses - 460; Other Eukaryotes - 16117 (source: NCBI BLink).  protein_id AT2G23030.1p  transcript_id AT2G23030.1  protein_id AT2G23030.1p  transcript_id AT2G23030.1  
At2g23040	chr2:009809183	0.0	C/9809183-9809209,9809036-9809101,9808927-9809003,9807893-9807998	AT2G23040.1  CDS  gene_syn F21P24.10, F21P24_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G23040.1p  transcript_id AT2G23040.1  protein_id AT2G23040.1p  transcript_id AT2G23040.1  
At2g23050	chr2:009810785	0.0	W/9810785-9810846,9810942-9811011,9811084-9812148,9812220-9812468	AT2G23050.1  CDS  gene_syn F21P24.11, F21P24_11, NAKED PINS IN YUC MUTANTS 4, NPY4  gene NPY4  function A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.  go_process response to light stimulus|GO:0009416||IEA  go_function signal transducer activity|GO:0004871||IEA  go_function protein binding|GO:0005515||IEA  go_process response to light stimulus|GO:0009416||ISS  go_function signal transducer activity|GO:0004871||ISS  product NPY4 (NAKED PINS IN YUC MUTANTS 4); protein binding / signal transducer  note NAKED PINS IN YUC MUTANTS 4 (NPY4); FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: response to light stimulus; EXPRESSED IN: shoot apex, embryo vascular system, embryo, hypocotyl, root; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: NPY5 (NAKED PINS IN YUC MUTANTS 5); protein binding / signal transducer (TAIR:AT4G37590.1); Has 460 Blast hits to 441 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 0; Plants - 429; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G23050.1p  transcript_id AT2G23050.1  protein_id AT2G23050.1p  transcript_id AT2G23050.1  
At2g23060	chr2:009814194	0.0	C/9814194-9814199,9813809-9814005,9812839-9813712	AT2G23060.2  CDS  gene_syn F21P24.12, F21P24_12  go_process metabolic process|GO:0008152||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product GCN5-related N-acetyltransferase (GNAT) family protein  note GCN5-related N-acetyltransferase (GNAT) family protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, embryo, pedicel, flower, seed; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: HLS1 (HOOKLESS 1); N-acetyltransferase (TAIR:AT4G37580.1); Has 62 Blast hits to 62 proteins in 14 species: Archae - 4; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G23060.2p  transcript_id AT2G23060.2  protein_id AT2G23060.2p  transcript_id AT2G23060.2  
At2g23060	chr2:009814463	0.0	C/9814463-9814633,9813809-9814005,9812839-9813712	AT2G23060.1  CDS  gene_syn F21P24.12, F21P24_12  go_process metabolic process|GO:0008152||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product GCN5-related N-acetyltransferase (GNAT) family protein  note GCN5-related N-acetyltransferase (GNAT) family protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, embryo, pedicel, flower, seed; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: HLS1 (HOOKLESS 1); N-acetyltransferase (TAIR:AT4G37580.1); Has 62 Blast hits to 62 proteins in 14 species: Archae - 4; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G23060.1p  transcript_id AT2G23060.1  protein_id AT2G23060.1p  transcript_id AT2G23060.1  
At2g23067	chr2:009822005	0.0	W/9822005-9822148	AT2G23067.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G23067.1p  transcript_id AT2G23067.1  protein_id AT2G23067.1p  transcript_id AT2G23067.1  
At2g23070	chr2:009826492	0.0	C/9826492-9826871,9826028-9826157,9825714-9825908,9825349-9825506,9825055-9825145,9824851-9824916,9824662-9824744,9824501-9824564,9824316-9824384,9824162-9824224	AT2G23070.1  CDS  gene_syn F21P24.13, F21P24_13  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product casein kinase II alpha chain, putative  note casein kinase II alpha chain, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CKA2 (CASEIN KINASE II, ALPHA CHAIN 2); kinase (TAIR:AT3G50000.1); Has 64751 Blast hits to 64057 proteins in 1615 species: Archae - 32; Bacteria - 5455; Metazoa - 28404; Fungi - 7544; Plants - 8636; Viruses - 332; Other Eukaryotes - 14348 (source: NCBI BLink).  protein_id AT2G23070.1p  transcript_id AT2G23070.1  protein_id AT2G23070.1p  transcript_id AT2G23070.1  
At2g23080	chr2:009827228	0.0	W/9827228-9827313,9827559-9827688,9827770-9827964,9828053-9828210,9828364-9828454,9828587-9828652,9828742-9828824,9828943-9829006,9829078-9829146,9829284-9829343	AT2G23080.1  CDS  gene_syn F21P24.14, F21P24_14  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product casein kinase II alpha chain, putative  note casein kinase II alpha chain, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CKA1 (CASEIN KINASE ALPHA 1); kinase (TAIR:AT5G67380.1); Has 63676 Blast hits to 62976 proteins in 1522 species: Archae - 29; Bacteria - 5523; Metazoa - 27776; Fungi - 7535; Plants - 8124; Viruses - 270; Other Eukaryotes - 14419 (source: NCBI BLink).  protein_id AT2G23080.1p  transcript_id AT2G23080.1  protein_id AT2G23080.1p  transcript_id AT2G23080.1  
At2g23080	chr2:009827228	0.0	W/9827228-9827313,9827559-9827688,9827770-9827964,9828053-9828210,9828364-9828454,9828587-9828652,9828742-9828824,9828943-9829057	AT2G23080.2  CDS  gene_syn F21P24.14, F21P24_14  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product casein kinase II alpha chain, putative  note casein kinase II alpha chain, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CKA1 (CASEIN KINASE ALPHA 1); kinase (TAIR:AT5G67380.1); Has 63028 Blast hits to 62381 proteins in 1519 species: Archae - 29; Bacteria - 5516; Metazoa - 27535; Fungi - 7460; Plants - 8013; Viruses - 255; Other Eukaryotes - 14220 (source: NCBI BLink).  protein_id AT2G23080.2p  transcript_id AT2G23080.2  protein_id AT2G23080.2p  transcript_id AT2G23080.2  
At2g23090	chr2:009830199	0.0	C/9830199-9830274,9830051-9830091,9829657-9829776	AT2G23090.1  CDS  gene_syn F21P24.15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1909 (InterPro:IPR015023); Has 104 Blast hits to 104 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 33; Plants - 46; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT2G23090.1p  transcript_id AT2G23090.1  protein_id AT2G23090.1p  transcript_id AT2G23090.1  
At2g23093	chr2:009832193	0.0	W/9832193-9832391,9832549-9832693,9832772-9832940,9833033-9833291,9833369-9833457,9833656-9833838,9833932-9834017,9834121-9834205,9834282-9834416	AT2G23093.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF791 (InterPro:IPR008509), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49310.1); Has 251 Blast hits to 248 proteins in 89 species: Archae - 0; Bacteria - 66; Metazoa - 68; Fungi - 18; Plants - 79; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT2G23093.1p  transcript_id AT2G23093.1  protein_id AT2G23093.1p  transcript_id AT2G23093.1  
At2g23096	chr2:009836128	0.0	C/9836128-9836235,9835942-9836040,9835692-9835838,9835482-9835586,9835300-9835395,9835129-9835194,9834932-9835051,9834766-9834849	AT2G23096.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process protein metabolic process|GO:0019538||IEA  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||IEA  go_process metabolic process|GO:0008152||ISS  go_function oxidoreductase activity|GO:0016491||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding; INVOLVED IN: protein metabolic process, metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G33910.1); Has 1867 Blast hits to 1860 proteins in 224 species: Archae - 0; Bacteria - 219; Metazoa - 909; Fungi - 59; Plants - 221; Viruses - 12; Other Eukaryotes - 447 (source: NCBI BLink).  protein_id AT2G23096.1p  transcript_id AT2G23096.1  protein_id AT2G23096.1p  transcript_id AT2G23096.1  
At2g23100	chr2:009837564	0.0	C/9837564-9839699	AT2G23100.1  CDS  gene_syn F21P24.16, F21P24_16  go_component chloroplast|GO:0009507||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT1G55380.1); Has 5429 Blast hits to 1604 proteins in 167 species: Archae - 2; Bacteria - 532; Metazoa - 1437; Fungi - 574; Plants - 1475; Viruses - 46; Other Eukaryotes - 1363 (source: NCBI BLink).  protein_id AT2G23100.1p  transcript_id AT2G23100.1  protein_id AT2G23100.1p  transcript_id AT2G23100.1  
At2g23110	chr2:009840552	0.0	W/9840552-9840830	AT2G23110.1  CDS  gene_syn F21P24.17, F21P24_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein 18 (InterPro:IPR018930); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23120.1); Has 25 Blast hits to 25 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G23110.1p  transcript_id AT2G23110.1  protein_id AT2G23110.1p  transcript_id AT2G23110.1  
At2g23118	chr2:009841882	0.0	C/9841882-9842025	AT2G23118.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G23118.1p  transcript_id AT2G23118.1  protein_id AT2G23118.1p  transcript_id AT2G23118.1  
At2g23120	chr2:009842102	0.0	W/9842102-9842353	AT2G23120.1  CDS  gene_syn F21P24.18, F21P24_18  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein 18 (InterPro:IPR018930); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23110.1); Has 25 Blast hits to 25 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G23120.1p  transcript_id AT2G23120.1  protein_id AT2G23120.1p  transcript_id AT2G23120.1  
At2g23130	chr2:009844411	0.0	W/9844411-9844884,9845103-9845186	AT2G23130.1  CDS  gene_syn AGP17, ARABINOGALACTAN PROTEIN 17, ATAGP17, T20D16.24  gene AGP17  function AGP17 is a lysine-rich arabinogalactan-protein (AGP) and part of a multi-gene family of glycoproteins with approx. 50 members. It falls into one subclass with AGP18 and AGP19, other lysine-rich AGPs. 84% of its proline residues are hydroxylated to hydroproline and its heavy glycosylation accounts for appr. 69% of the molecular weight. The main glycosyl residues are arabinose (30.1%) and galactose (55.1%). Glycosyl linkages are consistent with type II arabinogalactans. AGP17 is predicted to have a glycosylphosphatidylinositol (GPI)anchor and is localized to the plasma membrane and Hechtian strands. It is expressed in young/old leaves, shoots, suspension cultures and flowers.  go_component plasma membrane|GO:0005886|15840645|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function molecular_function|GO:0003674||ND  product AGP17 (ARABINOGALACTAN PROTEIN 17)  note ARABINOGALACTAN PROTEIN 17 (AGP17); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cyclopentenone; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; Has 59844 Blast hits to 26965 proteins in 1344 species: Archae - 185; Bacteria - 14506; Metazoa - 16285; Fungi - 6437; Plants - 6914; Viruses - 1900; Other Eukaryotes - 13617 (source: NCBI BLink).  protein_id AT2G23130.1p  transcript_id AT2G23130.1  protein_id AT2G23130.1p  transcript_id AT2G23130.1  
At2g23130	chr2:009844411	0.0	W/9844411-9844899	AT2G23130.2  CDS  gene_syn AGP17, ARABINOGALACTAN PROTEIN 17, ATAGP17, T20D16.24  gene AGP17  function AGP17 is a lysine-rich arabinogalactan-protein (AGP) and part of a multi-gene family of glycoproteins with approx. 50 members. It falls into one subclass with AGP18 and AGP19, other lysine-rich AGPs. 84% of its proline residues are hydroxylated to hydroproline and its heavy glycosylation accounts for appr. 69% of the molecular weight. The main glycosyl residues are arabinose (30.1%) and galactose (55.1%). Glycosyl linkages are consistent with type II arabinogalactans. AGP17 is predicted to have a glycosylphosphatidylinositol (GPI)anchor and is localized to the plasma membrane and Hechtian strands. It is expressed in young/old leaves, shoots, suspension cultures and flowers.  go_component plasma membrane|GO:0005886|15840645|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function molecular_function|GO:0003674||ND  product AGP17 (ARABINOGALACTAN PROTEIN 17)  note ARABINOGALACTAN PROTEIN 17 (AGP17); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cyclopentenone; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; Has 58270 Blast hits to 25675 proteins in 1323 species: Archae - 188; Bacteria - 14023; Metazoa - 15557; Fungi - 6106; Plants - 6951; Viruses - 1783; Other Eukaryotes - 13662 (source: NCBI BLink).  protein_id AT2G23130.2p  transcript_id AT2G23130.2  protein_id AT2G23130.2p  transcript_id AT2G23130.2  
At2g23140	chr2:009849104	0.0	C/9849104-9849105,9848502-9848769,9848148-9848264,9845868-9847910,9845696-9845755	AT2G23140.1  CDS  gene_syn T20D16.23, T20D16_23  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  product binding / ubiquitin-protein ligase  note binding / ubiquitin-protein ligase; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein / U-box domain-containing protein (TAIR:AT3G54790.1); Has 8108 Blast hits to 3696 proteins in 339 species: Archae - 6; Bacteria - 260; Metazoa - 2358; Fungi - 642; Plants - 2384; Viruses - 10; Other Eukaryotes - 2448 (source: NCBI BLink).  protein_id AT2G23140.1p  transcript_id AT2G23140.1  protein_id AT2G23140.1p  transcript_id AT2G23140.1  
At2g23142	chr2:009850176	0.0	W/9850176-9850619	AT2G23142.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23148.1); Has 46 Blast hits to 46 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G23142.1p  transcript_id AT2G23142.1  protein_id AT2G23142.1p  transcript_id AT2G23142.1  
At2g23148	chr2:009853632	0.0	W/9853632-9854063	AT2G23148.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23142.1); Has 67 Blast hits to 67 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G23148.1p  transcript_id AT2G23148.1  protein_id AT2G23148.1p  transcript_id AT2G23148.1  
At2g23149	chr2:009855857	0.0	W/9855857-9855964	AT2G23149.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G23149.1p  transcript_id AT2G23149.1  protein_id AT2G23149.1p  transcript_id AT2G23149.1  
At2g23150	chr2:009858030	0.0	C/9858030-9858565,9857452-9857588,9856707-9857359,9856422-9856625	AT2G23150.1  CDS  gene_syn ATNRAMP3, METAL TRANSPORTER NRAMP3, NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3, NRAMP3, T20D16.22, T20D16_22  gene NRAMP3  function Encodes a member of the Nramp2 metal transporter family; like its homolog Atnramp4, localized in vacuolar membrane. Seedlings of double mutant, atnramp3-1 atnramp4-1, were arrested at early germination.  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component vacuolar membrane|GO:0005774|12787249|IDA  go_process manganese ion transport|GO:0006828|11500563|TAS  go_process cellular metal ion homeostasis|GO:0006875|11500563|NAS  go_process response to bacterium|GO:0009617|19121106|IEP  go_process response to zinc ion|GO:0010043|14690510|IEP  go_process positive regulation of oxygen and reactive oxygen species metabolic process|GO:0010670|19121106|IGI  go_process cadmium ion transport|GO:0015691|11500563|TAS  go_process lead ion transport|GO:0015692|11500563|TAS  go_process metal ion transport|GO:0030001|11500563|TAS  go_process defense response to bacterium|GO:0042742|19121106|IMP  go_function manganese ion transmembrane transporter activity|GO:0005384|11500563|TAS  go_function inorganic anion transmembrane transporter activity|GO:0015103||ISS  go_function metal ion transmembrane transporter activity|GO:0046873|11500563|TAS  product NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3); inorganic anion transmembrane transporter/ manganese ion transmembrane transporter/ metal ion transmembrane transporter  note NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3 (NRAMP3); FUNCTIONS IN: manganese ion transmembrane transporter activity, inorganic anion transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: in 9 processes; LOCATED IN: vacuolar membrane, plasma membrane, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Natural resistance-associated macrophage protein (InterPro:IPR001046); BEST Arabidopsis thaliana protein match is: ATNRAMP4; inorganic anion transmembrane transporter/ manganese ion transmembrane transporter/ metal ion transmembrane transporter (TAIR:AT5G67330.1); Has 2824 Blast hits to 2802 proteins in 786 species: Archae - 48; Bacteria - 1810; Metazoa - 314; Fungi - 160; Plants - 196; Viruses - 0; Other Eukaryotes - 296 (source: NCBI BLink).  protein_id AT2G23150.1p  transcript_id AT2G23150.1  protein_id AT2G23150.1p  transcript_id AT2G23150.1  
At2g23160	chr2:009862470	0.0	W/9862470-9863393	AT2G23160.1  CDS  gene_syn T20D16.21, T20D16_21  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G16450.1); Has 750 Blast hits to 732 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 750; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G23160.1p  transcript_id AT2G23160.1  protein_id AT2G23160.1p  transcript_id AT2G23160.1  
At2g23170	chr2:009866183	0.0	C/9866183-9866502,9865986-9866087,9864125-9865490	AT2G23170.1  CDS  gene_syn GH3.3, T20D16.20, T20D16_20  gene GH3.3  function encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro.  go_process response to auxin stimulus|GO:0009733||ISS  go_process auxin homeostasis|GO:0010252|15659623|TAS  go_function indole-3-acetic acid amido synthetase activity|GO:0010279|15659623|IDA  product GH3.3; indole-3-acetic acid amido synthetase  note GH3.3; FUNCTIONS IN: indole-3-acetic acid amido synthetase activity; INVOLVED IN: auxin homeostasis, response to auxin stimulus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: BRU6; indole-3-acetic acid amido synthetase (TAIR:AT4G37390.1); Has 955 Blast hits to 845 proteins in 116 species: Archae - 0; Bacteria - 291; Metazoa - 49; Fungi - 2; Plants - 220; Viruses - 0; Other Eukaryotes - 393 (source: NCBI BLink).  protein_id AT2G23170.1p  transcript_id AT2G23170.1  protein_id AT2G23170.1p  transcript_id AT2G23170.1  
At2g23171	chr2:009866619	0.0	C/9866619-9866792	AT2G23171.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G23171.1p  transcript_id AT2G23171.1  protein_id AT2G23171.1p  transcript_id AT2G23171.1  
At2g23180	chr2:009874953	0.0	W/9874953-9876503	AT2G23180.1  CDS  gene_syn CYP96A1, CYTOCHROME P450, FAMILY 96, SUBFAMILY A, POLYPEPTIDE 1, T20D16.19, T20D16_19  gene CYP96A1  function member of CYP96A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP96A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP96A1; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP96A9 (CYTOCHROME P450 96 A9); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G39480.1); Has 20250 Blast hits to 20198 proteins in 1065 species: Archae - 19; Bacteria - 1429; Metazoa - 9397; Fungi - 3871; Plants - 4747; Viruses - 3; Other Eukaryotes - 784 (source: NCBI BLink).  protein_id AT2G23180.1p  transcript_id AT2G23180.1  protein_id AT2G23180.1p  transcript_id AT2G23180.1  
At2g23190	chr2:009877058	0.0	W/9877058-9877690,9877927-9878310,9878393-9879007	AT2G23190.1  CDS  gene_syn CYP81D7, CYTOCHROME P450, FAMILY 81, SUBFAMILY D, POLYPEPTIDE 7, T20D16.18, T20D16_18  gene CYP81D7  function member of CYP81D  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP81D7; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP81D7; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP81D6; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT2G23220.1); Has 24547 Blast hits to 24452 proteins in 1345 species: Archae - 32; Bacteria - 3187; Metazoa - 10269; Fungi - 4327; Plants - 5606; Viruses - 3; Other Eukaryotes - 1123 (source: NCBI BLink).  protein_id AT2G23190.1p  transcript_id AT2G23190.1  protein_id AT2G23190.1p  transcript_id AT2G23190.1  
At2g23200	chr2:009879351	0.0	W/9879351-9881855	AT2G23200.1  CDS  gene_syn T20D16.17, T20D16_17  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G24010.1); Has 84557 Blast hits to 83574 proteins in 3217 species: Archae - 42; Bacteria - 7514; Metazoa - 37328; Fungi - 6606; Plants - 18341; Viruses - 374; Other Eukaryotes - 14352 (source: NCBI BLink).  protein_id AT2G23200.1p  transcript_id AT2G23200.1  protein_id AT2G23200.1p  transcript_id AT2G23200.1  
At2g23210	chr2:009882534	0.0	C/9882534-9883397	AT2G23210.1  CDS  gene_syn T20D16.16, T20D16_16  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glycosyltransferase/ transferase, transferring glycosyl groups  note UDP-glycosyltransferase/ transferase, transferring glycosyl groups; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT84B2 (UDP-glucosyl transferase 84B2); UDP-glycosyltransferase/ abscisic acid glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT2G23250.1); Has 1190 Blast hits to 1186 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1190; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G23210.1p  transcript_id AT2G23210.1  protein_id AT2G23210.1p  transcript_id AT2G23210.1  
At2g23220	chr2:009884550	0.0	W/9884550-9885095,9885656-9886039,9886135-9886752	AT2G23220.1  CDS  gene_syn CYP81D6, CYTOCHROME P450, FAMILY 81, SUBFAMILY D, POLYPEPTIDE 6, T20D16.15, T20D16_15  gene CYP81D6  function member of CYP81D  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP81D6; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP81D6; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP81D7; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT2G23190.1); Has 24458 Blast hits to 24354 proteins in 1356 species: Archae - 37; Bacteria - 3063; Metazoa - 10282; Fungi - 4376; Plants - 5617; Viruses - 0; Other Eukaryotes - 1083 (source: NCBI BLink).  protein_id AT2G23220.1p  transcript_id AT2G23220.1  protein_id AT2G23220.1p  transcript_id AT2G23220.1  
At2g23230	chr2:009892716	0.0	W/9892716-9892949,9893023-9893305,9893389-9893764,9893848-9894069,9894330-9894471,9894751-9894999,9895071-9895400	AT2G23230.1  CDS  gene_syn T20D16.14, T20D16_14  go_process metabolic process|GO:0008152||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function lyase activity|GO:0016829||IEA  product terpene synthase/cyclase family protein  note terpene synthase/cyclase family protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: ATTS1; lyase/ magnesium ion binding (TAIR:AT4G15870.1); Has 1031 Blast hits to 1022 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1028; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G23230.1p  transcript_id AT2G23230.1  protein_id AT2G23230.1p  transcript_id AT2G23230.1  
At2g23240	chr2:009896233	0.0	C/9896233-9896325,9895995-9896156	AT2G23240.2  CDS  gene_syn T20D16.13, T20D16_13  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function zinc ion binding|GO:0008270||ISS  product plant EC metallothionein-like family 15 protein  note plant EC metallothionein-like family 15 protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Plant EC metallothionein-like protein, family 15 (InterPro:IPR000316); BEST Arabidopsis thaliana protein match is: plant EC metallothionein-like family 15 protein (TAIR:AT2G42000.1); Has 110 Blast hits to 88 proteins in 33 species: Archae - 0; Bacteria - 4; Metazoa - 21; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT2G23240.2p  transcript_id AT2G23240.2  protein_id AT2G23240.2p  transcript_id AT2G23240.2  
At2g23240	chr2:009896237	0.0	C/9896237-9896325,9895995-9896163	AT2G23240.1  CDS  gene_syn T20D16.13, T20D16_13  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function zinc ion binding|GO:0008270||ISS  product plant EC metallothionein-like family 15 protein  note plant EC metallothionein-like family 15 protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Plant EC metallothionein-like protein, family 15 (InterPro:IPR000316); BEST Arabidopsis thaliana protein match is: plant EC metallothionein-like family 15 protein (TAIR:AT2G42000.1); Has 254 Blast hits to 196 proteins in 72 species: Archae - 0; Bacteria - 6; Metazoa - 52; Fungi - 0; Plants - 140; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT2G23240.1p  transcript_id AT2G23240.1  protein_id AT2G23240.1p  transcript_id AT2G23240.1  
At2g23250	chr2:009897809	0.0	C/9897809-9899125	AT2G23250.1  CDS  gene_syn T20D16.12, T20D16_12, UDP-glucosyl transferase 84B2, UGT84B2  gene UGT84B2  go_process metabolic process|GO:0008152||IEA  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function abscisic acid glucosyltransferase activity|GO:0010294||IDA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UGT84B2 (UDP-glucosyl transferase 84B2); UDP-glycosyltransferase/ abscisic acid glucosyltransferase/ transferase, transferring glycosyl groups  note UDP-glucosyl transferase 84B2 (UGT84B2); FUNCTIONS IN: UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT84B1 (UDP-glucosyl transferase 84B1); UDP-glycosyltransferase/ abscisic acid glucosyltransferase/ indole-3-acetate beta-glucosyltransferase/ quercetin 7-O-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT2G23260.1); Has 4826 Blast hits to 4799 proteins in 342 species: Archae - 0; Bacteria - 165; Metazoa - 1834; Fungi - 39; Plants - 2663; Viruses - 97; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT2G23250.1p  transcript_id AT2G23250.1  protein_id AT2G23250.1p  transcript_id AT2G23250.1  
At2g23260	chr2:009900046	0.0	C/9900046-9901416	AT2G23260.1  CDS  gene_syn T20D16.11, T20D16_11, UDP-glucosyl transferase 84B1, UGT84B1  gene UGT84B1  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function abscisic acid glucosyltransferase activity|GO:0010294||IDA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function indole-3-acetate beta-glucosyltransferase activity|GO:0047215|11042207|IDA  go_function quercetin 7-O-glucosyltransferase activity|GO:0080044|15352060|IDA  product UGT84B1 (UDP-glucosyl transferase 84B1); UDP-glycosyltransferase/ abscisic acid glucosyltransferase/ indole-3-acetate beta-glucosyltransferase/ quercetin 7-O-glucosyltransferase/ transferase, transferring glycosyl groups  note UDP-glucosyl transferase 84B1 (UGT84B1); FUNCTIONS IN: indole-3-acetate beta-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT84B2 (UDP-glucosyl transferase 84B2); UDP-glycosyltransferase/ abscisic acid glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT2G23250.1); Has 5155 Blast hits to 5125 proteins in 361 species: Archae - 0; Bacteria - 219; Metazoa - 2081; Fungi - 33; Plants - 2671; Viruses - 119; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT2G23260.1p  transcript_id AT2G23260.1  protein_id AT2G23260.1p  transcript_id AT2G23260.1  
At2g23270	chr2:009903311	0.0	W/9903311-9903571	AT2G23270.1  CDS  gene_syn T20D16.10, T20D16_10  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, sperm cell, root, stamen; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37290.1); Has 10 Blast hits to 10 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G23270.1p  transcript_id AT2G23270.1  protein_id AT2G23270.1p  transcript_id AT2G23270.1  
At2g23290	chr2:009904895	0.0	C/9904895-9905824	AT2G23290.1  CDS  gene_syn AtMYB70, T20D16.8, T20D16_8, myb domain protein 70  gene AtMYB70  function Member of the R2R3 factor gene family.  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AtMYB70 (myb domain protein 70); DNA binding / transcription factor  note myb domain protein 70 (AtMYB70); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to cadmium ion, response to salt stress, regulation of transcription, DNA-dependent; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB73 (MYB DOMAIN PROTEIN 73); DNA binding / transcription factor (TAIR:AT4G37260.1); Has 6168 Blast hits to 5523 proteins in 354 species: Archae - 0; Bacteria - 0; Metazoa - 648; Fungi - 379; Plants - 3343; Viruses - 3; Other Eukaryotes - 1795 (source: NCBI BLink).  protein_id AT2G23290.1p  transcript_id AT2G23290.1  protein_id AT2G23290.1p  transcript_id AT2G23290.1  
At2g23300	chr2:009914608	0.0	W/9914608-9916240,9916442-9917130	AT2G23300.1  CDS  gene_syn T20D16.7, T20D16_7  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / protein kinase family protein (TAIR:AT4G37250.1); Has 87607 Blast hits to 64628 proteins in 2670 species: Archae - 57; Bacteria - 5987; Metazoa - 29857; Fungi - 3855; Plants - 37186; Viruses - 222; Other Eukaryotes - 10443 (source: NCBI BLink).  protein_id AT2G23300.1p  transcript_id AT2G23300.1  protein_id AT2G23300.1p  transcript_id AT2G23300.1  
At2g23310	chr2:009917643	0.0	W/9917643-9918058,9918587-9918767,9918872-9918913	AT2G23310.1  CDS  gene_syn ATRER1C, ATRER1C1, T20D16.6, T20D16_6  gene ATRER1C1  function Encodes AtRER1C1, a Golgi membrane protein involved in returning the molecules that are exported from the endoplasmic reticulum (ER) to the Golgi apparatus back to the ER (a mechanism known as retrieval). There are two Arabidopsis homologues of AtRERC1: AtRER1A and AtRER1B.  go_component integral to membrane|GO:0016021||IEA  go_component integral to membrane|GO:0016021||ISS  go_process maintenance of protein location|GO:0045185|10737146|IGI  go_function molecular_function|GO:0003674||ND  product ATRER1C1  note ATRER1C1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: maintenance of protein location; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Retrieval of early ER protein Rer1 (InterPro:IPR004932); BEST Arabidopsis thaliana protein match is: ATRER1A (TAIR:AT4G39220.1); Has 361 Blast hits to 361 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 98; Plants - 76; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT2G23310.1p  transcript_id AT2G23310.1  protein_id AT2G23310.1p  transcript_id AT2G23310.1  
At2g23310	chr2:009917643	0.0	W/9917643-9918058,9918587-9918767,9918875-9918913	AT2G23310.2  CDS  gene_syn ATRER1C, ATRER1C1, T20D16.6, T20D16_6  gene ATRER1C1  function Encodes AtRER1C1, a Golgi membrane protein involved in returning the molecules that are exported from the endoplasmic reticulum (ER) to the Golgi apparatus back to the ER (a mechanism known as retrieval). There are two Arabidopsis homologues of AtRERC1: AtRER1A and AtRER1B.  go_component integral to membrane|GO:0016021||IEA  go_component integral to membrane|GO:0016021||ISS  go_process maintenance of protein location|GO:0045185|10737146|IGI  go_function molecular_function|GO:0003674||ND  product ATRER1C1  note ATRER1C1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: maintenance of protein location; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Retrieval of early ER protein Rer1 (InterPro:IPR004932); BEST Arabidopsis thaliana protein match is: ATRER1A (TAIR:AT4G39220.1); Has 360 Blast hits to 360 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 98; Plants - 75; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT2G23310.2p  transcript_id AT2G23310.2  protein_id AT2G23310.2p  transcript_id AT2G23310.2  
At2g23320	chr2:009924998	0.0	W/9924998-9925650,9925752-9925877,9925980-9926154	AT2G23320.1  CDS  gene_syn T20D16.5, T20D16_5, WRKY DNA-BINDING PROTEIN 15, WRKY15  gene WRKY15  function Encodes WRKY DNA-binding protein 15 (WRKY15).  go_component nucleus|GO:0005634|10785665|IC  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_process response to chitin|GO:0010200|17722694|IEP  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function calmodulin binding|GO:0005516|15733871|IDA  product WRKY15; calmodulin binding / transcription factor  note WRKY15; FUNCTIONS IN: transcription factor activity, calmodulin binding; INVOLVED IN: response to chitin, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY, Zn-cluster (InterPro:IPR018872); BEST Arabidopsis thaliana protein match is: WRKY17; calmodulin binding / transcription factor (TAIR:AT2G24570.1); Has 2012 Blast hits to 1723 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 1; Plants - 1974; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT2G23320.1p  transcript_id AT2G23320.1  protein_id AT2G23320.1p  transcript_id AT2G23320.1  
At2g23320	chr2:009924998	0.0	W/9924998-9925650,9925752-9925877,9925982-9925991	AT2G23320.2  CDS  gene_syn T20D16.5, T20D16_5, WRKY DNA-BINDING PROTEIN 15, WRKY15  gene WRKY15  function Encodes WRKY DNA-binding protein 15 (WRKY15).  go_component nucleus|GO:0005634|10785665|IC  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_process response to chitin|GO:0010200|17722694|IEP  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function calmodulin binding|GO:0005516|15733871|IDA  product WRKY15; calmodulin binding / transcription factor  note WRKY15; FUNCTIONS IN: transcription factor activity, calmodulin binding; INVOLVED IN: response to chitin, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY, Zn-cluster (InterPro:IPR018872); BEST Arabidopsis thaliana protein match is: WRKY17; calmodulin binding / transcription factor (TAIR:AT2G24570.1); Has 669 Blast hits to 652 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 1; Plants - 644; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT2G23320.2p  transcript_id AT2G23320.2  protein_id AT2G23320.2p  transcript_id AT2G23320.2  
At2g23321	chr2:009926378	0.0	W/9926378-9926518	AT2G23321.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G23321.1p  transcript_id AT2G23321.1  protein_id AT2G23321.1p  transcript_id AT2G23321.1  
At2g23330	chr2:009927826	0.0	C/9927826-9932319	AT2G23330.1  mRNA_TE_gene  pseudo  gene_syn T20D16.4, T20D16_4  note Transposable element gene, copia-like retrotransposon family, has a 3.9e-195 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)  
At2g23340	chr2:009938186	0.0	W/9938186-9938716	AT2G23340.1  CDS  gene_syn T20D16.3, T20D16_3  function encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: RAP2.10 (related to AP2 10); DNA binding / transcription factor (TAIR:AT4G36900.1); Has 3611 Blast hits to 3581 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3606; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT2G23340.1p  transcript_id AT2G23340.1  protein_id AT2G23340.1p  transcript_id AT2G23340.1  
At2g23348	chr2:009941303	0.0	C/9941303-9941575	AT2G23348.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G23348.1p  transcript_id AT2G23348.1  protein_id AT2G23348.1p  transcript_id AT2G23348.1  
At2g23347	chr2:009942193	0.0	C/9942193-9942293	AT2G23347.1  miRNA  gene_syn MICRORNA844A, MIR844A  gene MIR844A  function Encodes a microRNA that targets a ubiquitin ligase complex-associated protein kinase family member. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: AAUGGUAAGAUUGCUUAUAAG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR844A (MICRORNA844A); miRNA  transcript_id AT2G23347.1  
At2g23350	chr2:009943209	0.0	W/9943209-9943506,9943719-9943837,9943922-9944578,9944676-9944753,9944847-9944936,9945018-9945152,9945254-9945421,9945505-9945687,9945781-9946041	AT2G23350.1  CDS  gene_syn PAB4, PABP4, POLY(A) BINDING PROTEIN 4, T20D16.2, T20D16_2  gene PAB4  function polyadenylate-binding protein, putative / PABP, putative.Member of the Class II family of PABP proteins. Highly and ubiquitously expressed.  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function RNA binding|GO:0003723||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product PAB4 (POLY(A) BINDING PROTEIN 4); RNA binding / translation initiation factor  note POLY(A) BINDING PROTEIN 4 (PAB4); FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Polyadenylate-binding protein/Hyperplastic disc protein (InterPro:IPR002004), RNA recognition motif, RNP-1 (InterPro:IPR000504), Polyadenylate binding protein, human types 1, 2, 3, 4 (InterPro:IPR006515), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: PAB2 (POLY(A) BINDING 2); RNA binding / translation initiation factor (TAIR:AT4G34110.1); Has 47243 Blast hits to 20085 proteins in 721 species: Archae - 24; Bacteria - 2634; Metazoa - 27028; Fungi - 5195; Plants - 6836; Viruses - 7; Other Eukaryotes - 5519 (source: NCBI BLink).  protein_id AT2G23350.1p  transcript_id AT2G23350.1  protein_id AT2G23350.1p  transcript_id AT2G23350.1  
At2g23360	chr2:009949456	0.0	W/9949456-9949488,9949826-9949940,9950044-9951997,9952080-9952128,9952218-9952727	AT2G23360.1  CDS  gene_syn F26B6.1, F26B6_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product transport protein-related  note transport protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869, plant (InterPro:IPR008587); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47900.1); Has 30800 Blast hits to 18912 proteins in 1037 species: Archae - 357; Bacteria - 2360; Metazoa - 17202; Fungi - 2509; Plants - 1353; Viruses - 118; Other Eukaryotes - 6901 (source: NCBI BLink).  protein_id AT2G23360.1p  transcript_id AT2G23360.1  protein_id AT2G23360.1p  transcript_id AT2G23360.1  
At2g23370	chr2:009954916	0.0	C/9954916-9955018,9954696-9954779,9954520-9954594,9954395-9954437,9954260-9954317,9953996-9954163,9953853-9953915,9953679-9953773,9953490-9953571,9953293-9953403,9953067-9953207	AT2G23370.1  CDS  gene_syn F26B6.2, F26B6_2  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34090.1); Has 38 Blast hits to 38 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G23370.1p  transcript_id AT2G23370.1  protein_id AT2G23370.1p  transcript_id AT2G23370.1  
At2g23380	chr2:009955570	0.0	W/9955570-9955632,9955910-9956002,9956087-9956388,9956493-9956654,9956792-9956876,9957072-9957206,9957307-9957354,9957427-9957498,9957580-9958280,9958382-9958532,9958632-9958855,9958935-9959066,9959192-9959282,9959382-9959429,9959533-9959661,9959756-9959833,9959923-9960117	AT2G23380.1  CDS  gene_syn CLF, CURLY LEAF, F26B6.3, F26B6_3, ICU1, INCURVATA 1, SDG1, SET1, SETDOMAIN 1, SETDOMAIN GROUP 1  gene CLF  function Similar to the product of the Polycomb-group gene Enhancer of zeste. Required for stable repression of AG and AP3. Putative role in cell fate determination. Involved in the control of leaf morphogenesis. mutants exhibit curled, involute leaves. AGAMOUS and APETALA3 are ectopically expressed in the mutant.  go_component chloroplast|GO:0009507||IEA  go_process genetic imprinting|GO:0006349|16527743|IMP  go_process DNA mediated transformation|GO:0009294|17827277|IMP  go_process leaf morphogenesis|GO:0009965|11063708|IMP  go_process vernalization response|GO:0010048|16983073|IMP  go_process histone methylation|GO:0016571|16527743|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product CLF (CURLY LEAF); transcription factor  note CURLY LEAF (CLF); FUNCTIONS IN: transcription factor activity; INVOLVED IN: genetic imprinting, DNA mediated transformation, histone methylation, vernalization response, leaf morphogenesis; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), SANT, eukarya (InterPro:IPR017884); BEST Arabidopsis thaliana protein match is: SWN (SWINGER); transcription factor (TAIR:AT4G02020.1); Has 4868 Blast hits to 4199 proteins in 396 species: Archae - 0; Bacteria - 401; Metazoa - 2335; Fungi - 547; Plants - 587; Viruses - 16; Other Eukaryotes - 982 (source: NCBI BLink).  protein_id AT2G23380.1p  transcript_id AT2G23380.1  protein_id AT2G23380.1p  transcript_id AT2G23380.1  
At2g23390	chr2:009963414	0.0	C/9963414-9963476,9963146-9963292,9962799-9962981,9962422-9962703,9962052-9962173,9961881-9961947,9961621-9961671,9961352-9961404,9960975-9961185,9960720-9960890,9960568-9960627	AT2G23390.1  CDS  gene_syn F26B6.4, F26B6_4  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF482 (InterPro:IPR007434), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 1806 Blast hits to 1806 proteins in 374 species: Archae - 0; Bacteria - 707; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 1084 (source: NCBI BLink).  protein_id AT2G23390.1p  transcript_id AT2G23390.1  protein_id AT2G23390.1p  transcript_id AT2G23390.1  
At2g23400	chr2:009965174	0.0	C/9965174-9965229,9964664-9964901,9964508-9964575,9964302-9964421,9963978-9964257	AT2G23400.1  CDS  gene_syn F26B6.5, F26B6_5  go_process dolichol biosynthetic process|GO:0019408|10908715|IGI  go_function dehydrodolichyl diphosphate synthase activity|GO:0045547|10908715|IGI  product dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative  note dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative; FUNCTIONS IN: dehydrodolichyl diphosphate synthase activity; INVOLVED IN: dolichol biosynthetic process; CONTAINS InterPro DOMAIN/s: Di-trans-poly-cis-decaprenylcistransferase-like, conserved site (InterPro:IPR018520), Di-trans-poly-cis-decaprenylcistransferase-like (InterPro:IPR001441); BEST Arabidopsis thaliana protein match is: ACPT (Arabidopsis cis-prenyltransferase); dehydrodolichyl diphosphate synthase (TAIR:AT2G23410.1); Has 6323 Blast hits to 6285 proteins in 1541 species: Archae - 179; Bacteria - 2793; Metazoa - 154; Fungi - 162; Plants - 121; Viruses - 0; Other Eukaryotes - 2914 (source: NCBI BLink).  protein_id AT2G23400.1p  transcript_id AT2G23400.1  protein_id AT2G23400.1p  transcript_id AT2G23400.1  
At2g23410	chr2:009967584	0.0	C/9967584-9967741,9966921-9967158,9966772-9966842,9966247-9966691	AT2G23410.1  CDS  gene_syn ACPT, Arabidopsis cis-prenyltransferase  gene ACPT  function encodes cis-prenyltransferase  go_component endomembrane system|GO:0012505||IEA  go_process dolichol biosynthetic process|GO:0019408|10908715|IGI  go_function dehydrodolichyl diphosphate synthase activity|GO:0045547|10908715|IGI  product ACPT (Arabidopsis cis-prenyltransferase); dehydrodolichyl diphosphate synthase  note Arabidopsis cis-prenyltransferase (ACPT); FUNCTIONS IN: dehydrodolichyl diphosphate synthase activity; INVOLVED IN: dolichol biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Di-trans-poly-cis-decaprenylcistransferase-like, conserved site (InterPro:IPR018520), Di-trans-poly-cis-decaprenylcistransferase-like (InterPro:IPR001441); BEST Arabidopsis thaliana protein match is: dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative (TAIR:AT5G58780.1); Has 6344 Blast hits to 6315 proteins in 1542 species: Archae - 181; Bacteria - 2792; Metazoa - 161; Fungi - 164; Plants - 121; Viruses - 0; Other Eukaryotes - 2925 (source: NCBI BLink).  protein_id AT2G23410.1p  transcript_id AT2G23410.1  protein_id AT2G23410.1p  transcript_id AT2G23410.1  
At2g23420	chr2:009971819	0.0	W/9971819-9971967,9972059-9972203,9972292-9972411,9972504-9972638,9972732-9972793,9972890-9972965,9973189-9973290,9973425-9973541,9973632-9973690,9973796-9973970,9974054-9974188,9974274-9974372,9974456-9974564,9974641-9974753,9974832-9974909	AT2G23420.1  CDS  gene_syn F26B6.7, F26B6_7, NAPRT2, NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2  gene NAPRT2  go_process pyridine nucleotide biosynthetic process|GO:0019363||IEA  go_function nicotinate phosphoribosyltransferase activity|GO:0004516||IEA  go_component cellular_component|GO:0005575||ND  go_process nicotinate nucleotide salvage|GO:0019358||ISS  go_function nicotinate phosphoribosyltransferase activity|GO:0004516||ISS  product NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2); nicotinate phosphoribosyltransferase  note NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2 (NAPRT2); FUNCTIONS IN: nicotinate phosphoribosyltransferase activity; INVOLVED IN: pyridine nucleotide biosynthetic process, nicotinate nucleotide salvage; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nicotinate phosphoribosyltransferase-related (InterPro:IPR007229), Nicotinate phosphoribosyltransferase putative (InterPro:IPR006405), Nicotinate phosphoribosyltransferase-like (InterPro:IPR015977); BEST Arabidopsis thaliana protein match is: NAPRT1 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 1); nicotinate phosphoribosyltransferase (TAIR:AT4G36940.1); Has 1505 Blast hits to 1472 proteins in 651 species: Archae - 89; Bacteria - 1056; Metazoa - 166; Fungi - 30; Plants - 33; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).  protein_id AT2G23420.1p  transcript_id AT2G23420.1  protein_id AT2G23420.1p  transcript_id AT2G23420.1  
At2g23430	chr2:009977724	0.0	C/9977724-9977921,9977587-9977630,9977202-9977468,9977020-9977086	AT2G23430.1  CDS  gene_syn CYCLIN-DEPENDENT KINASE INHIBITOR PROTEIN, F26B6.8, F26B6_8, ICK1, KIP-RELATED PROTEIN 1, KRP1  gene ICK1  function Encodes a cyclin-dependent kinase inhibitor protein that functions as a negative regulator of cell division and promoter of endoreduplication. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. Both SKP2b and RKP appear to be involved in the degradation of KRP1.  go_component nucleus|GO:0005634|15749764|IDA  go_process G1/S transition of mitotic cell cycle|GO:0000082|18005227|TAS  go_process response to abscisic acid stimulus|GO:0009737|9753775|IEP  go_process lateral root morphogenesis|GO:0010102||NAS  go_process lateral root formation|GO:0010311|18005227|IMP  go_process negative regulation of cyclin-dependent protein kinase activity|GO:0045736|16376885|IDA  go_process negative regulation of cyclin-dependent protein kinase activity|GO:0045736|9753775|ISS  go_process positive regulation of DNA replication|GO:0045740|15749764|IMP  go_process leaf development|GO:0048366|18005227|IMP  go_process shoot development|GO:0048367|18005227|IMP  go_process lateral root development|GO:0048527|18005227|IMP  go_function cyclin-dependent protein kinase inhibitor activity|GO:0004861|9087400|ISS  product ICK1; cyclin-dependent protein kinase inhibitor  note ICK1; FUNCTIONS IN: cyclin-dependent protein kinase inhibitor activity; INVOLVED IN: in 9 processes; LOCATED IN: nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-dependent kinase inhibitor (InterPro:IPR003175), Cyclin-dependent kinase inhibitor, plant (InterPro:IPR016701); Has 437 Blast hits to 397 proteins in 70 species: Archae - 0; Bacteria - 7; Metazoa - 136; Fungi - 12; Plants - 130; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).  protein_id AT2G23430.1p  transcript_id AT2G23430.1  protein_id AT2G23430.1p  transcript_id AT2G23430.1  
At2g23440	chr2:009979482	0.0	W/9979482-9979730	AT2G23440.1  CDS  gene_syn F26B6.9, F26B6_9  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G23440.1p  transcript_id AT2G23440.1  protein_id AT2G23440.1p  transcript_id AT2G23440.1  
At2g23450	chr2:009990452	0.0	C/9990452-9991244,9990275-9990346,9988926-9990187	AT2G23450.1  CDS  gene_syn F26B6.10, F26B6_10  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), EGF (InterPro:IPR006210), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G66790.1); Has 82251 Blast hits to 81096 proteins in 2050 species: Archae - 44; Bacteria - 7263; Metazoa - 35522; Fungi - 6333; Plants - 18456; Viruses - 342; Other Eukaryotes - 14291 (source: NCBI BLink).  protein_id AT2G23450.1p  transcript_id AT2G23450.1  protein_id AT2G23450.1p  transcript_id AT2G23450.1  
At2g23450	chr2:009990452	0.0	C/9990452-9991244,9990275-9990346,9988926-9990187	AT2G23450.2  CDS  gene_syn F26B6.10, F26B6_10  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), EGF (InterPro:IPR006210), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G66790.1); Has 82251 Blast hits to 81096 proteins in 2050 species: Archae - 44; Bacteria - 7263; Metazoa - 35522; Fungi - 6333; Plants - 18456; Viruses - 342; Other Eukaryotes - 14291 (source: NCBI BLink).  protein_id AT2G23450.2p  transcript_id AT2G23450.2  protein_id AT2G23450.2p  transcript_id AT2G23450.2  
At2g23460	chr2:009995699	0.0	W/9995699-9996772,9996860-9997102,9997191-9997379,9997462-9997648,9997785-9998029,9998135-9998298,9998381-9998945	AT2G23460.1  CDS  gene_syn ATXLG1, EXTRA-LARGE G-PROTEIN 1, F26B6.11, F26B6_11, XLG1  gene XLG1  function encodes a novel G-alpha protein that shares similarity to plant, yeast, and animal G-alpha proteins at the C-terminus. It contains an N-terminus that is as large as the C-terminus, is a member of a small family, and is expressed in all tissues examined, including roots, leaves, stems, flowers, and fruits.  go_function signal transducer activity|GO:0004871||IEA  go_function guanyl nucleotide binding|GO:0019001||IEA  go_component nucleus|GO:0005634|17999646|IDA  go_process G-protein coupled receptor protein signaling pathway|GO:0007186||ISS  go_process response to abscisic acid stimulus|GO:0009737|17999646|IGI  go_process response to sucrose stimulus|GO:0009744|17999646|IGI  go_process response to glucose stimulus|GO:0009749|17999646|IGI  go_process response to fructose stimulus|GO:0009750|17999646|IGI  go_process root morphogenesis|GO:0010015|17999646|IGI  go_process response to mannitol stimulus|GO:0010555|17999646|IGI  go_function signal transducer activity|GO:0004871||ISS  product XLG1 (EXTRA-LARGE G-PROTEIN 1); guanyl nucleotide binding / signal transducer  note EXTRA-LARGE G-PROTEIN 1 (XLG1); FUNCTIONS IN: signal transducer activity, guanyl nucleotide binding; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Guanine nucleotide binding protein (G-protein), alpha subunit (InterPro:IPR001019), G protein alpha subunit, helical insertion (InterPro:IPR011025); BEST Arabidopsis thaliana protein match is: XLG3 (extra-large GTP-binding protein 3); guanyl nucleotide binding / signal transducer (TAIR:AT1G31930.2); Has 2788 Blast hits to 2784 proteins in 337 species: Archae - 0; Bacteria - 2; Metazoa - 1968; Fungi - 430; Plants - 231; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).  protein_id AT2G23460.1p  transcript_id AT2G23460.1  protein_id AT2G23460.1p  transcript_id AT2G23460.1  
At2g23470	chr2:010000934	0.0	C/10000934-10001398,10000711-10000857,10000480-10000626,10000321-10000383,10000166-10000242,9999979-10000084,9999794-9999896,9999558-9999712,9999418-9999483,9999105-9999338	AT2G23470.1  CDS  gene_syn F26B6.12, F26B6_12  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: stem, stamen; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF647 (InterPro:IPR006968); BEST Arabidopsis thaliana protein match is: emb1879 (embryo defective 1879) (TAIR:AT5G49820.1); Has 259 Blast hits to 258 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 92; Fungi - 35; Plants - 93; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT2G23470.1p  transcript_id AT2G23470.1  protein_id AT2G23470.1p  transcript_id AT2G23470.1  
At2g23480	chr2:010001893	0.0	W/10001893-10004688	AT2G23480.1  mRNA_TE_gene  pseudo  gene_syn F26B6.13, F26B6_13  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35794.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G29710.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G04330.1); similar to hypothetical protein Tb927.4.5120 [Trypanosoma brucei TREU927] (GB:XP_826463.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048)  
At2g23490	chr2:010005109	0.0	C/10005109-10005684	AT2G23490.1  mRNA_TE_gene  pseudo  gene_syn F26B6.14, F26B6_14  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G29700.1)  
At2g23500	chr2:010006560	0.0	C/10006560-10008914	AT2G23500.1  mRNA_TE_gene  pseudo  gene_syn F26B6.15, F26B6_15  note Transposable element gene, Mutator-like transposase family, has a 2.4e-80 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g23510	chr2:010013078	0.0	C/10013078-10013533,10012280-10012522,10011517-10012173	AT2G23510.1  CDS  gene_syn F26B6.16, F26B6_16, SDT, SPERMIDINE DISINAPOYL ACYLTRANSFERASE  gene SDT  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  go_function spermidine:sinapoyl CoA N-acyltransferase activity|GO:0080072|19168716|IDA  go_function sinapoyl spermidine:sinapoyl CoA N-acyltransferase activity|GO:0080089|19168716|IDA  product SDT (SPERMIDINE DISINAPOYL ACYLTRANSFERASE); sinapoyl spermidine:sinapoyl CoA N-acyltransferase/ spermidine:sinapoyl CoA N-acyltransferase/ transferase  note SPERMIDINE DISINAPOYL ACYLTRANSFERASE (SDT); FUNCTIONS IN: spermidine:sinapoyl CoA N-acyltransferase activity, sinapoyl spermidine:sinapoyl CoA N-acyltransferase activity, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, developing seed stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT2G25150.1); Has 1202 Blast hits to 1196 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 29; Plants - 1171; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G23510.1p  transcript_id AT2G23510.1  protein_id AT2G23510.1p  transcript_id AT2G23510.1  
At2g23520	chr2:010014256	0.0	C/10014256-10016943	AT2G23520.1  CDS  gene_syn F26B6.17, F26B6_17  go_component plasma membrane|GO:0005886|17317660|IDA  go_function catalytic activity|GO:0003824||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_process biological_process|GO:0008150||ND  product catalytic/ pyridoxal phosphate binding  note catalytic/ pyridoxal phosphate binding; FUNCTIONS IN: pyridoxal phosphate binding, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: catalytic/ pyridoxal phosphate binding (TAIR:AT4G37100.1); Has 361 Blast hits to 314 proteins in 102 species: Archae - 6; Bacteria - 16; Metazoa - 93; Fungi - 74; Plants - 125; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT2G23520.1p  transcript_id AT2G23520.1  protein_id AT2G23520.1p  transcript_id AT2G23520.1  
At2g23530	chr2:010022536	0.0	C/10022536-10022804,10022069-10022305,10021887-10021970,10021694-10021823,10020652-10021590	AT2G23530.1  CDS  gene_syn F26B6.18, F26B6_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cell division cycle-associated protein (InterPro:IPR018866); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G37110.1); Has 305 Blast hits to 301 proteins in 74 species: Archae - 0; Bacteria - 2; Metazoa - 117; Fungi - 39; Plants - 120; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT2G23530.1p  transcript_id AT2G23530.1  protein_id AT2G23530.1p  transcript_id AT2G23530.1  
At2g23540	chr2:010024366	0.0	W/10024366-10024669,10024877-10025007,10025105-10025353,10025452-10025707,10025835-10026058	AT2G23540.1  CDS  gene_syn F26B6.19, F26B6_19  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, hypocotyl, flower, root; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT3G50400.1); Has 1902 Blast hits to 1884 proteins in 185 species: Archae - 0; Bacteria - 268; Metazoa - 1; Fungi - 38; Plants - 1577; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT2G23540.1p  transcript_id AT2G23540.1  protein_id AT2G23540.1p  transcript_id AT2G23540.1  
At2g23550	chr2:010028396	0.0	C/10028396-10028767,10028189-10028326,10027813-10028100	AT2G23550.1  CDS  gene_syn ABE1, ALPHA/BETA FOLD HYDROLASE/ESTERASE 1, ATMES6, F26B6.20, F26B6_20, MES6, METHYL ESTERASE 6  gene MES6  function Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco but no enzymatic activity has been identified for this protein.  go_function hydrolase activity|GO:0016787||ISS  product MES6 (METHYL ESTERASE 6); hydrolase  note METHYL ESTERASE 6 (MES6); FUNCTIONS IN: hydrolase activity; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: MES4 (METHYL ESTERASE 4); hydrolase/ hydrolase, acting on ester bonds / methyl salicylate esterase (TAIR:AT2G23580.1); Has 842 Blast hits to 842 proteins in 196 species: Archae - 0; Bacteria - 387; Metazoa - 6; Fungi - 12; Plants - 332; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT2G23550.1p  transcript_id AT2G23550.1  protein_id AT2G23550.1p  transcript_id AT2G23550.1  
At2g23550	chr2:010028635	0.0	C/10028635-10028767,10028396-10028547,10028189-10028326,10027813-10028100	AT2G23550.2  CDS  gene_syn ABE1, ALPHA/BETA FOLD HYDROLASE/ESTERASE 1, ATMES6, F26B6.20, F26B6_20, MES6, METHYL ESTERASE 6  gene MES6  function Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco but no enzymatic activity has been identified for this protein.  go_function hydrolase activity|GO:0016787||ISS  product MES6 (METHYL ESTERASE 6); hydrolase  note METHYL ESTERASE 6 (MES6); FUNCTIONS IN: hydrolase activity; EXPRESSED IN: leaf; BEST Arabidopsis thaliana protein match is: MES4 (METHYL ESTERASE 4); hydrolase/ hydrolase, acting on ester bonds / methyl salicylate esterase (TAIR:AT2G23580.1); Has 665 Blast hits to 665 proteins in 164 species: Archae - 0; Bacteria - 271; Metazoa - 0; Fungi - 9; Plants - 332; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT2G23550.2p  transcript_id AT2G23550.2  protein_id AT2G23550.2p  transcript_id AT2G23550.2  
At2g23560	chr2:010029911	0.0	C/10029911-10030282,10029705-10029833,10029336-10029617	AT2G23560.1  CDS  gene_syn ARABIDOPSIS THALIANA METHYL ESTERASE 7, ATMES7, F26B6.21, F26B6_21, MES7, METHYL ESTERASE 7  gene MES7  function Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, and methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeGA4, or MEGA9 in vitro. MES7 appears to be involved in MeSA hydrolysis in planta. Expression of MES7 can restore systemic acquired resistance in SAR-deficient tobacco plants.  go_component endomembrane system|GO:0012505||IEA  go_process systemic acquired resistance|GO:0009627|18643994|IGI  go_process salicylic acid metabolic process|GO:0009696|18467465|IDA  go_process defense response to fungus, incompatible interaction|GO:0009817|18643994|TAS  go_function hydrolase activity|GO:0016787||ISS  go_function hydrolase activity, acting on ester bonds|GO:0016788|18467465|IDA  go_function methyl indole-3-acetate esterase activity|GO:0080030|18467465|IDA  go_function methyl salicylate esterase activity|GO:0080031|18643994|IMP  product MES7 (METHYL ESTERASE 7); hydrolase/ hydrolase, acting on ester bonds / methyl indole-3-acetate esterase/ methyl salicylate esterase  note METHYL ESTERASE 7 (MES7); FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on ester bonds, methyl salicylate esterase activity, methyl indole-3-acetate esterase activity; INVOLVED IN: defense response to fungus, incompatible interaction, systemic acquired resistance, salicylic acid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, LP.10 ten leaves visible, LP.02 two leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: MES4 (METHYL ESTERASE 4); hydrolase/ hydrolase, acting on ester bonds / methyl salicylate esterase (TAIR:AT2G23580.1); Has 1254 Blast hits to 1254 proteins in 294 species: Archae - 2; Bacteria - 700; Metazoa - 7; Fungi - 33; Plants - 334; Viruses - 2; Other Eukaryotes - 176 (source: NCBI BLink).  protein_id AT2G23560.1p  transcript_id AT2G23560.1  protein_id AT2G23560.1p  transcript_id AT2G23560.1  
At2g23570	chr2:010032308	0.0	C/10032308-10032427,10032086-10032223,10031713-10031994	AT2G23570.1  CDS  gene_syn ARABIDOPSIS THALIANA METHYL ESTERASE 19, ATMES19, F26B6.22, F26B6_22, MES19, METHYL ESTERASE 19  gene MES19  function Encodes a protein with similarity to SABP2, a methyl salicylate esterase from tobacco. However, this protein is truncated and lacks one of the residues of the predicted catalytic triad, suggesting that it does not have this enzymatic activity.  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product MES19 (METHYL ESTERASE 19); hydrolase  note METHYL ESTERASE 19 (MES19); FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: MES4 (METHYL ESTERASE 4); hydrolase/ hydrolase, acting on ester bonds / methyl salicylate esterase (TAIR:AT2G23580.1); Has 330 Blast hits to 330 proteins in 30 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 316; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT2G23570.1p  transcript_id AT2G23570.1  protein_id AT2G23570.1p  transcript_id AT2G23570.1  
At2g23580	chr2:010033939	0.0	C/10033939-10034310,10033722-10033859,10033360-10033641	AT2G23580.1  CDS  gene_syn ABE4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, ARABIDOPSIS THALIANA METHYL ESTERASE 4, ATMES4, F26B6.23, F26B6_23, MES4, METHYL ESTERASE 4  gene MES4  function Encodes a protein shown to have carboxylesterase activity and methyl salicylate esterase activity in vitro. This protein does not act on methyl IAA, methyl JA, MeGA4, or MEGA9 in vitro.  go_process salicylic acid metabolic process|GO:0009696|18643994|IDA  go_function hydrolase activity|GO:0016787||ISS  go_function hydrolase activity, acting on ester bonds|GO:0016788|18467465|IDA  go_function methyl salicylate esterase activity|GO:0080031|18467465|IDA  product MES4 (METHYL ESTERASE 4); hydrolase/ hydrolase, acting on ester bonds / methyl salicylate esterase  note METHYL ESTERASE 4 (MES4); FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on ester bonds, methyl salicylate esterase activity; INVOLVED IN: salicylic acid metabolic process; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: MES6 (METHYL ESTERASE 6); hydrolase (TAIR:AT2G23550.1); Has 836 Blast hits to 836 proteins in 198 species: Archae - 0; Bacteria - 375; Metazoa - 0; Fungi - 20; Plants - 332; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).  protein_id AT2G23580.1p  transcript_id AT2G23580.1  protein_id AT2G23580.1p  transcript_id AT2G23580.1  
At2g23590	chr2:010035560	0.0	C/10035560-10035985,10034992-10035102,10034607-10034888	AT2G23590.1  CDS  gene_syn ATMES8, F26B6.24, F26B6_24, MES8, METHYL ESTERASE 8  gene MES8  function Encodes a protein shown to have carboxylesterase activity in vitro. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.  go_component endomembrane system|GO:0012505||IEA  go_function hydrolase activity|GO:0016787||ISS  go_function hydrolase activity, acting on ester bonds|GO:0016788|18467465|IDA  product MES8 (METHYL ESTERASE 8); hydrolase/ hydrolase, acting on ester bonds  note METHYL ESTERASE 8 (MES8); FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on ester bonds; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: ACL (ACETONE-CYANOHYDRIN LYASE); hydrolase/ hydrolase, acting on ester bonds / methyl indole-3-acetate esterase/ methyl jasmonate esterase/ methyl salicylate esterase (TAIR:AT2G23600.1); Has 1129 Blast hits to 1129 proteins in 269 species: Archae - 0; Bacteria - 600; Metazoa - 4; Fungi - 20; Plants - 337; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).  protein_id AT2G23590.1p  transcript_id AT2G23590.1  protein_id AT2G23590.1p  transcript_id AT2G23590.1  
At2g23600	chr2:010043267	0.0	C/10043267-10043641,10042690-10042824,10042325-10042606	AT2G23600.1  CDS  gene_syn ACETONE-CYANOHYDRIN LYASE, ACL, ARABIDOPSIS THALIANA METHYL ESTERASE 2, ATMES2, F26B6.25, F26B6_25, MES2, METHYL ESTERASE 2  gene ACL  function Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES2 appears to be involved in MeSA hydrolysis in planta. This protein does not act on MeGA4, or MEGA9 in vitro.  go_component cellular_component|GO:0005575||ND  go_process salicylic acid metabolic process|GO:0009696|18467465|IMP  go_function hydrolase activity|GO:0016787||ISS  go_function hydrolase activity, acting on ester bonds|GO:0016788|18467465|IDA  go_function methyl indole-3-acetate esterase activity|GO:0080030|18467465|IDA  go_function methyl salicylate esterase activity|GO:0080031|18467465|IDA  go_function methyl jasmonate esterase activity|GO:0080032|18643994|IDA  product ACL (ACETONE-CYANOHYDRIN LYASE); hydrolase/ hydrolase, acting on ester bonds / methyl indole-3-acetate esterase/ methyl jasmonate esterase/ methyl salicylate esterase  note ACETONE-CYANOHYDRIN LYASE (ACL); FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on ester bonds, methyl salicylate esterase activity, methyl jasmonate esterase activity, methyl indole-3-acetate esterase activity; INVOLVED IN: salicylic acid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: MES1 (METHYL ESTERASE 1); hydrolase, acting on ester bonds / methyl indole-3-acetate esterase/ methyl jasmonate esterase/ methyl salicylate esterase (TAIR:AT2G23620.1); Has 1118 Blast hits to 1118 proteins in 271 species: Archae - 0; Bacteria - 600; Metazoa - 9; Fungi - 15; Plants - 340; Viruses - 0; Other Eukaryotes - 154 (source: NCBI BLink).  protein_id AT2G23600.1p  transcript_id AT2G23600.1  protein_id AT2G23600.1p  transcript_id AT2G23600.1  
At2g23610	chr2:010046029	0.0	C/10046029-10046403,10044795-10044929,10044410-10044691	AT2G23610.1  CDS  gene_syn ARABIDOPSIS THALIANA METHYL ESTERASE 3, ATMES3, F26B6.26, F26B6_26, MES3, METHYL ESTERASE 3  gene MES3  function Encodes a protein shown to have carboxylesterase activity, methyl IAA esterase activity, and methyl jasmonate esterase activity in vitro. This protein does not act on methyl salicylate, MeGA4, or MEGA9 in vitro.  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity, acting on ester bonds|GO:0016788|18467465|IDA  go_function hydrolase activity, acting on ester bonds|GO:0016788||ISS  go_function methyl indole-3-acetate esterase activity|GO:0080030|18467465|IDA  go_function methyl jasmonate esterase activity|GO:0080032|18467465|IDA  product MES3 (METHYL ESTERASE 3); hydrolase, acting on ester bonds / methyl indole-3-acetate esterase/ methyl jasmonate esterase  note METHYL ESTERASE 3 (MES3); FUNCTIONS IN: hydrolase activity, acting on ester bonds, methyl jasmonate esterase activity, methyl indole-3-acetate esterase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: MES4 (METHYL ESTERASE 4); hydrolase/ hydrolase, acting on ester bonds / methyl salicylate esterase (TAIR:AT2G23580.1); Has 1086 Blast hits to 1086 proteins in 263 species: Archae - 1; Bacteria - 581; Metazoa - 0; Fungi - 9; Plants - 340; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink).  protein_id AT2G23610.1p  transcript_id AT2G23610.1  protein_id AT2G23610.1p  transcript_id AT2G23610.1  
At2g23620	chr2:010048874	0.0	C/10048874-10049248,10048296-10048430,10047462-10047743	AT2G23620.1  CDS  gene_syn ARABIDOPSIS THALIANA METHYL ESTERASE 1, ATMES1, F26B6.27, F26B6_27, MES1, METHYL ESTERASE 1  gene MES1  function Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES1 appears to be involved in MeSA hydrolysis in planta. Expression of MES1 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro.  go_component cellular_component|GO:0005575||ND  go_process systemic acquired resistance|GO:0009627|18643994|IGI  go_process salicylic acid metabolic process|GO:0009696|18643994|IMP  go_process defense response to fungus, incompatible interaction|GO:0009817|18643994|TAS  go_function hydrolase activity, acting on ester bonds|GO:0016788|18467465|IDA  go_function hydrolase activity, acting on ester bonds|GO:0016788||ISS  go_function methyl indole-3-acetate esterase activity|GO:0080030|18467465|IDA  go_function methyl salicylate esterase activity|GO:0080031|18467465|IDA  go_function methyl jasmonate esterase activity|GO:0080032|18467465|IDA  product MES1 (METHYL ESTERASE 1); hydrolase, acting on ester bonds / methyl indole-3-acetate esterase/ methyl jasmonate esterase/ methyl salicylate esterase  note METHYL ESTERASE 1 (MES1); FUNCTIONS IN: hydrolase activity, acting on ester bonds, methyl salicylate esterase activity, methyl jasmonate esterase activity, methyl indole-3-acetate esterase activity; INVOLVED IN: defense response to fungus, incompatible interaction, systemic acquired resistance, salicylic acid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: ACL (ACETONE-CYANOHYDRIN LYASE); hydrolase/ hydrolase, acting on ester bonds / methyl indole-3-acetate esterase/ methyl jasmonate esterase/ methyl salicylate esterase (TAIR:AT2G23600.1); Has 1054 Blast hits to 1054 proteins in 256 species: Archae - 0; Bacteria - 537; Metazoa - 7; Fungi - 26; Plants - 343; Viruses - 0; Other Eukaryotes - 141 (source: NCBI BLink).  protein_id AT2G23620.1p  transcript_id AT2G23620.1  protein_id AT2G23620.1p  transcript_id AT2G23620.1  
At2g23630	chr2:010055165	0.0	C/10055165-10055311,10054764-10054873,10054279-10054549,10054067-10054166,10053619-10053964,10053176-10053541,10052994-10053072,10052581-10052787	AT2G23630.1  CDS  gene_syn F26B6.30, SKU5 Similar 16, sks16  gene sks16  go_component endomembrane system|GO:0012505||IEA  go_function copper ion binding|GO:0005507||ISS  go_function pectinesterase activity|GO:0030599||ISS  product sks16 (SKU5 Similar 16); copper ion binding / pectinesterase  note SKU5 Similar 16 (sks16); FUNCTIONS IN: pectinesterase activity, copper ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: sks15 (SKU5 Similar 15); copper ion binding / oxidoreductase (TAIR:AT4G37160.1); Has 3666 Blast hits to 3642 proteins in 654 species: Archae - 2; Bacteria - 1007; Metazoa - 248; Fungi - 1479; Plants - 775; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink).  protein_id AT2G23630.1p  transcript_id AT2G23630.1  protein_id AT2G23630.1p  transcript_id AT2G23630.1  
At2g23640	chr2:010057554	0.0	W/10057554-10057593,10057733-10057919,10058206-10058417,10058861-10059042	AT2G23640.1  CDS  gene_syn F26B6.29  go_component endoplasmic reticulum|GO:0005783||IEA  go_component endoplasmic reticulum|GO:0005783||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product reticulon family protein (RTNLB13)  note reticulon family protein (RTNLB13); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: reticulon family protein (TAIR:AT3G10915.3); Has 553 Blast hits to 553 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 308; Fungi - 0; Plants - 236; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G23640.1p  transcript_id AT2G23640.1  protein_id AT2G23640.1p  transcript_id AT2G23640.1  
At2g23650	chr2:010059446	0.0	C/10059446-10059517	AT2G23650.1  tRNA  gene_syn 22095.TRNA-MET-1, 27126.TRNA-MET-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Met (anticodon: CAT)  transcript_id AT2G23650.1  
At2g23660	chr2:010060242	0.0	C/10060242-10061177	AT2G23660.1  CDS  gene_syn F26B6.31, F26B6_31, LBD10, LOB DOMAIN-CONTAINING PROTEIN 10  gene LBD10  go_process biological_process|GO:0008150||ND  product LBD10 (LOB DOMAIN-CONTAINING PROTEIN 10)  note LOB DOMAIN-CONTAINING PROTEIN 10 (LBD10); INVOLVED IN: biological_process unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883), Asymmetric leaves, AS2/LOB (InterPro:IPR017414); BEST Arabidopsis thaliana protein match is: ASL1 (TAIR:AT5G66870.1); Has 633 Blast hits to 629 proteins in 32 species: Archae - 0; Bacteria - 6; Metazoa - 18; Fungi - 1; Plants - 605; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G23660.1p  transcript_id AT2G23660.1  protein_id AT2G23660.1p  transcript_id AT2G23660.1  
At2g23660	chr2:010060242	0.0	C/10060242-10061177	AT2G23660.2  CDS  gene_syn F26B6.31, F26B6_31, LBD10, LOB DOMAIN-CONTAINING PROTEIN 10  gene LBD10  go_process biological_process|GO:0008150||ND  product LBD10 (LOB DOMAIN-CONTAINING PROTEIN 10)  note LOB DOMAIN-CONTAINING PROTEIN 10 (LBD10); INVOLVED IN: biological_process unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883), Asymmetric leaves, AS2/LOB (InterPro:IPR017414); BEST Arabidopsis thaliana protein match is: ASL1 (TAIR:AT5G66870.1).  protein_id AT2G23660.2p  transcript_id AT2G23660.2  protein_id AT2G23660.2p  transcript_id AT2G23660.2  
At2g23672	chr2:010063245	0.0	W/10063245-10064004	AT2G23672.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G23670  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G23672.1  
At2g23670	chr2:010063307	0.0	C/10063307-10063810	AT2G23670.1  CDS  gene_syn Arabidopsis homolog of Synechocystis YCF37, F26B6.28, YCF37  gene YCF37  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product YCF37 (Arabidopsis homolog of Synechocystis YCF37)  note Arabidopsis homolog of Synechocystis YCF37 (YCF37); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 30 Blast hits to 30 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT2G23670.1p  transcript_id AT2G23670.1  protein_id AT2G23670.1p  transcript_id AT2G23670.1  
At2g23673	chr2:010064205	0.0	W/10064205-10065748	AT2G23673.1  pseudogenic_transcript  pseudo  function Pseudogene of AT2G23680; stress-responsive protein, putative  
At2g23680	chr2:010066242	0.0	W/10066242-10066360,10066453-10066566,10066662-10066732,10066899-10067164	AT2G23680.1  CDS  gene_syn F26B6.33  go_component membrane|GO:0016020|17432890|IDA  go_process response to stress|GO:0006950||ISS  go_function molecular_function|GO:0003674||ND  product stress-responsive protein, putative  note stress-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, LP.10 ten leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Cold acclimation WCOR413 (InterPro:IPR008892); BEST Arabidopsis thaliana protein match is: stress-responsive protein, putative (TAIR:AT4G37220.1); Has 91 Blast hits to 90 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G23680.1p  transcript_id AT2G23680.1  protein_id AT2G23680.1p  transcript_id AT2G23680.1  
At2g23680	chr2:010066460	0.0	W/10066460-10066566,10066662-10066732,10066899-10067164	AT2G23680.2  CDS  gene_syn F26B6.33  go_component membrane|GO:0016020|17432890|IDA  go_process response to stress|GO:0006950||ISS  go_function molecular_function|GO:0003674||ND  product stress-responsive protein, putative  note stress-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, LP.10 ten leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Cold acclimation WCOR413 (InterPro:IPR008892); BEST Arabidopsis thaliana protein match is: stress-responsive protein, putative (TAIR:AT4G37220.1); Has 80 Blast hits to 80 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G23680.2p  transcript_id AT2G23680.2  protein_id AT2G23680.2p  transcript_id AT2G23680.2  
At2g23690	chr2:010072297	0.0	W/10072297-10072771,10075251-10075413,10075771-10075969	AT2G23690.1  CDS  gene_syn F27L4.13, F27L4_13  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37240.1); Has 121 Blast hits to 121 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 119; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G23690.1p  transcript_id AT2G23690.1  protein_id AT2G23690.1p  transcript_id AT2G23690.1  
At2g23700	chr2:010079797	0.0	C/10079797-10079849,10079392-10079473,10079222-10079308,10079023-10079136,10078196-10078936,10077754-10078121,10077562-10077661,10077412-10077471,10077214-10077300,10077007-10077132,10076624-10076929	AT2G23700.1  CDS  gene_syn F27L4.12, F27L4_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66600.3); Has 528 Blast hits to 428 proteins in 84 species: Archae - 0; Bacteria - 55; Metazoa - 84; Fungi - 12; Plants - 313; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT2G23700.1p  transcript_id AT2G23700.1  protein_id AT2G23700.1p  transcript_id AT2G23700.1  
At2g23710	chr2:010085907	0.0	W/10085907-10088039	AT2G23710.1  mRNA_TE_gene  pseudo  gene_syn F27L4.11, F27L4_11  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09370.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23930.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G47330.1); similar to hypothetical protein 23.t00036 [Brassica oleracea] (GB:ABD65624.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048)  
At2g23720	chr2:010088774	0.0	C/10088774-10092878	AT2G23720.1  mRNA_TE_gene  pseudo  gene_syn F27L4.10, F27L4_10  note Transposable element gene, Mutator-like transposase family, has a 6.7e-76 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g23740	chr2:010098213	0.0	W/10098213-10098437,10098532-10098834,10098906-10099016,10099090-10099200,10099304-10101955,10102042-10102203,10102339-10102455,10102533-10102636,10102721-10102858,10102937-10103024,10103113-10103229	AT2G23740.1  CDS  gene_syn F27L4.8, F27L4_8  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||IEA  go_process chromatin modification|GO:0016568||IEA  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product nucleic acid binding / transcription factor/ zinc ion binding  note nucleic acid binding / transcription factor/ zinc ion binding; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: chromatin modification; LOCATED IN: nucleus, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), SET (InterPro:IPR001214), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Post-SET zinc-binding region (InterPro:IPR003616), Pre-SET zinc-binding region (InterPro:IPR007728), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: SUVH6; methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding / methyltransferase (TAIR:AT2G22740.2); Has 4553 Blast hits to 4368 proteins in 331 species: Archae - 0; Bacteria - 282; Metazoa - 2497; Fungi - 333; Plants - 533; Viruses - 0; Other Eukaryotes - 908 (source: NCBI BLink).  protein_id AT2G23740.1p  transcript_id AT2G23740.1  protein_id AT2G23740.1p  transcript_id AT2G23740.1  
At2g23755	chr2:010103895	0.0	C/10103895-10103985,10103533-10103814,10103375-10103454	AT2G23755.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 15 Blast hits to 15 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G23755.1p  transcript_id AT2G23755.1  protein_id AT2G23755.1p  transcript_id AT2G23755.1  
At2g23760	chr2:010111780	0.0	C/10111780-10112736,10110621-10111012,10109402-10109462,10107951-10108424	AT2G23760.1  CDS  gene_syn BEL1-LIKE HOMEODOMAIN 4, BLH4, F27L4.6, F27L4_6, SAW2, SAWTOOTH 2  gene BLH4  function Encodes a member of the BEL family of homeodomain proteins. Plants doubly mutant for saw1/saw2 (blh2/blh4) have serrated leaves. BP is expressed in the serrated leaves, therefore saw2 and saw1 may act redundantly to repress BP in leaves.  go_component nucleus|GO:0005634||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process leaf morphogenesis|GO:0009965|17873098|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product BLH4 (BEL1-LIKE HOMEODOMAIN 4); DNA binding / transcription factor  note BEL1-LIKE HOMEODOMAIN 4 (BLH4); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: N-terminal protein myristoylation, leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BLH2 (BEL1-LIKE HOMEODOMAIN 2); DNA binding / transcription factor (TAIR:AT4G36870.2); Has 4656 Blast hits to 4568 proteins in 282 species: Archae - 0; Bacteria - 2; Metazoa - 2086; Fungi - 225; Plants - 2048; Viruses - 0; Other Eukaryotes - 295 (source: NCBI BLink).  protein_id AT2G23760.1p  transcript_id AT2G23760.1  protein_id AT2G23760.1p  transcript_id AT2G23760.1  
At2g23760	chr2:010111780	0.0	C/10111780-10112736,10110621-10111012,10109402-10109462,10107951-10108424	AT2G23760.2  CDS  gene_syn BEL1-LIKE HOMEODOMAIN 4, BLH4, F27L4.6, F27L4_6, SAW2, SAWTOOTH 2  gene BLH4  function Encodes a member of the BEL family of homeodomain proteins. Plants doubly mutant for saw1/saw2 (blh2/blh4) have serrated leaves. BP is expressed in the serrated leaves, therefore saw2 and saw1 may act redundantly to repress BP in leaves.  go_component nucleus|GO:0005634||IEA  go_process leaf morphogenesis|GO:0009965|17873098|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product BLH4 (BEL1-LIKE HOMEODOMAIN 4); DNA binding / transcription factor  note BEL1-LIKE HOMEODOMAIN 4 (BLH4); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BLH2 (BEL1-LIKE HOMEODOMAIN 2); DNA binding / transcription factor (TAIR:AT4G36870.2); Has 4656 Blast hits to 4568 proteins in 282 species: Archae - 0; Bacteria - 2; Metazoa - 2086; Fungi - 225; Plants - 2048; Viruses - 0; Other Eukaryotes - 295 (source: NCBI BLink).  protein_id AT2G23760.2p  transcript_id AT2G23760.2  protein_id AT2G23760.2p  transcript_id AT2G23760.2  
At2g23760	chr2:010111780	0.0	C/10111780-10112736,10110621-10111012,10109402-10109462,10107951-10108424	AT2G23760.3  CDS  gene_syn BEL1-LIKE HOMEODOMAIN 4, BLH4, F27L4.6, F27L4_6, SAW2, SAWTOOTH 2  gene BLH4  function Encodes a member of the BEL family of homeodomain proteins. Plants doubly mutant for saw1/saw2 (blh2/blh4) have serrated leaves. BP is expressed in the serrated leaves, therefore saw2 and saw1 may act redundantly to repress BP in leaves.  go_component nucleus|GO:0005634||IEA  go_process leaf morphogenesis|GO:0009965|17873098|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product BLH4 (BEL1-LIKE HOMEODOMAIN 4); DNA binding / transcription factor  note BEL1-LIKE HOMEODOMAIN 4 (BLH4); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BLH2 (BEL1-LIKE HOMEODOMAIN 2); DNA binding / transcription factor (TAIR:AT4G36870.2); Has 4656 Blast hits to 4568 proteins in 282 species: Archae - 0; Bacteria - 2; Metazoa - 2086; Fungi - 225; Plants - 2048; Viruses - 0; Other Eukaryotes - 295 (source: NCBI BLink).  protein_id AT2G23760.3p  transcript_id AT2G23760.3  protein_id AT2G23760.3p  transcript_id AT2G23760.3  
At2g23770	chr2:010120242	0.0	C/10120242-10122080	AT2G23770.1  CDS  gene_syn F27L4.5, F27L4_5  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process cell wall macromolecule catabolic process|GO:0016998||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein / peptidoglycan-binding LysM domain-containing protein  note protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation, cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: stem, leaf whorl, root, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), Immunoglobulin-like (InterPro:IPR007110), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (TAIR:AT2G33580.1); Has 67037 Blast hits to 66413 proteins in 1968 species: Archae - 40; Bacteria - 5289; Metazoa - 29959; Fungi - 4517; Plants - 16011; Viruses - 309; Other Eukaryotes - 10912 (source: NCBI BLink).  protein_id AT2G23770.1p  transcript_id AT2G23770.1  protein_id AT2G23770.1p  transcript_id AT2G23770.1  
At2g23780	chr2:010123551	0.0	C/10123551-10124234	AT2G23780.1  CDS  gene_syn F27L4.4, F27L4_4  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G19310.1); Has 2997 Blast hits to 2989 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 1936; Fungi - 317; Plants - 374; Viruses - 17; Other Eukaryotes - 353 (source: NCBI BLink).  protein_id AT2G23780.1p  transcript_id AT2G23780.1  protein_id AT2G23780.1p  transcript_id AT2G23780.1  
At2g23790	chr2:010126904	0.0	C/10126904-10127455,10125692-10126150	AT2G23790.1  CDS  gene_syn F27L4.3, F27L4_3  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF607 (InterPro:IPR006769); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G36820.1); Has 267 Blast hits to 265 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 34; Plants - 71; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT2G23790.1p  transcript_id AT2G23790.1  protein_id AT2G23790.1p  transcript_id AT2G23790.1  
At2g23800	chr2:010131619	0.0	C/10131619-10132749	AT2G23800.1  CDS  gene_syn F27L4.2, F27L4_2, GERANYLGERANYL PYROPHOSPHATE SYNTHASE 2, GERANYLGERANYL PYROPHOSPHATE SYNTHASE 5, GGPS2, GGPS5, PREGERANYLGERANYL PYROPHOSPHATE SYNTHASE  gene GGPS2  function encodes an endoplasmic reticulum-targeted geranylgeranyl pyrophosphate synthase  go_component endoplasmic reticulum|GO:0005783|10759500|IDA  go_process isoprenoid biosynthetic process|GO:0008299|9150607|TAS  go_function farnesyltranstransferase activity|GO:0004311|9150607|IDA  go_function farnesyltranstransferase activity|GO:0004311|9150607|IGI  product GGPS2 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 2); farnesyltranstransferase  note GERANYLGERANYL PYROPHOSPHATE SYNTHASE 2 (GGPS2); FUNCTIONS IN: farnesyltranstransferase activity; INVOLVED IN: isoprenoid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: leaf whorl, petal, male gametophyte, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: GGPS4 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 4); farnesyltranstransferase (TAIR:AT2G18640.1); Has 11651 Blast hits to 11646 proteins in 1689 species: Archae - 213; Bacteria - 4916; Metazoa - 289; Fungi - 369; Plants - 289; Viruses - 6; Other Eukaryotes - 5569 (source: NCBI BLink).  protein_id AT2G23800.1p  transcript_id AT2G23800.1  protein_id AT2G23800.1p  transcript_id AT2G23800.1  
At2g23808	chr2:010135175	0.0	W/10135175-10135465	AT2G23808.1  pseudogenic_transcript  pseudo  function pseudogene of transcriptional factor B3 family protein  
At2g23810	chr2:010136846	0.0	C/10136846-10137352,10135859-10136173	AT2G23810.1  CDS  gene_syn F27L4.1, F27L4_1, TET8, TETRASPANIN8  gene TET8  function Member of TETRASPANIN family  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_process aging|GO:0007568||ISS  go_function molecular_function|GO:0003674||ND  product TET8 (TETRASPANIN8)  note TETRASPANIN8 (TET8); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499), Tetraspanin, conserved site (InterPro:IPR018503), Tetraspanin, subgroup (InterPro:IPR000301); BEST Arabidopsis thaliana protein match is: TET9 (TETRASPANIN9) (TAIR:AT4G30430.1); Has 374 Blast hits to 373 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 148; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT2G23810.1p  transcript_id AT2G23810.1  protein_id AT2G23810.1p  transcript_id AT2G23810.1  
At2g23820	chr2:010140595	0.0	W/10140595-10140864,10141717-10141841,10141926-10141963,10142044-10142154,10142267-10142383,10142476-10142517,10142602-10142672	AT2G23820.2  CDS  gene_syn T29E15.2, T29E15_2  go_function catalytic activity|GO:0003824||IEA  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product metal-dependent phosphohydrolase HD domain-containing protein  note metal-dependent phosphohydrolase HD domain-containing protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD region, subdomain (InterPro:IPR006674), Metal-dependent phosphohydrolase, HD region (InterPro:IPR003607); BEST Arabidopsis thaliana protein match is: metal-dependent phosphohydrolase HD domain-containing protein (TAIR:AT1G26160.1); Has 948 Blast hits to 927 proteins in 397 species: Archae - 83; Bacteria - 514; Metazoa - 101; Fungi - 99; Plants - 40; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).  protein_id AT2G23820.2p  transcript_id AT2G23820.2  protein_id AT2G23820.2p  transcript_id AT2G23820.2  
At2g23820	chr2:010140595	0.0	W/10140595-10140864,10141717-10141841,10141926-10141963,10142044-10142154,10142267-10142383,10142476-10142552	AT2G23820.1  CDS  gene_syn T29E15.2, T29E15_2  go_function catalytic activity|GO:0003824||IEA  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product metal-dependent phosphohydrolase HD domain-containing protein  note metal-dependent phosphohydrolase HD domain-containing protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD region, subdomain (InterPro:IPR006674), Metal-dependent phosphohydrolase, HD region (InterPro:IPR003607); BEST Arabidopsis thaliana protein match is: metal-dependent phosphohydrolase HD domain-containing protein (TAIR:AT1G26160.1); Has 948 Blast hits to 927 proteins in 397 species: Archae - 83; Bacteria - 514; Metazoa - 101; Fungi - 99; Plants - 40; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).  protein_id AT2G23820.1p  transcript_id AT2G23820.1  protein_id AT2G23820.1p  transcript_id AT2G23820.1  
At2g23830	chr2:010143646	0.0	W/10143646-10143697,10143824-10143894,10143981-10144062,10144169-10144284,10144383-10144511	AT2G23830.1  CDS  gene_syn T29E15.3, T29E15_3  go_function structural molecule activity|GO:0005198||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function structural molecule activity|GO:0005198||ISS  product vesicle-associated membrane protein, putative / VAMP, putative  note vesicle-associated membrane protein, putative / VAMP, putative; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535); BEST Arabidopsis thaliana protein match is: VAP (VESICLE ASSOCIATED PROTEIN); protein binding (TAIR:AT3G60600.3); Has 598 Blast hits to 595 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 253; Fungi - 95; Plants - 197; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT2G23830.1p  transcript_id AT2G23830.1  protein_id AT2G23830.1p  transcript_id AT2G23830.1  
At2g23834	chr2:010148690	0.0	W/10148690-10148752,10149012-10149050	AT2G23834.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G23834.1p  transcript_id AT2G23834.1  protein_id AT2G23834.1p  transcript_id AT2G23834.1  
At2g23840	chr2:010155260	0.0	C/10155260-10155600,10155009-10155063,10154732-10154806,10154561-10154652,10154383-10154464,10154205-10154288,10153982-10154107	AT2G23840.1  CDS  gene_syn T29E15.4, T29E15_4  go_function nucleic acid binding|GO:0003676||IEA  go_function endonuclease activity|GO:0004519||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function endonuclease activity|GO:0004519||ISS  product HNH endonuclease domain-containing protein  note HNH endonuclease domain-containing protein; FUNCTIONS IN: endonuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HNH nuclease (InterPro:IPR003615), HNH endonuclease (InterPro:IPR002711); Has 3440 Blast hits to 3440 proteins in 403 species: Archae - 2; Bacteria - 975; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 23; Other Eukaryotes - 2421 (source: NCBI BLink).  protein_id AT2G23840.1p  transcript_id AT2G23840.1  protein_id AT2G23840.1p  transcript_id AT2G23840.1  
At2g23850	chr2:010156201	0.0	C/10156201-10156896	AT2G23850.1  pseudogenic_transcript  pseudo  gene_syn T29E15.5  note pseudogene, similar to Uricase II (EC 1.7.3.3) (Urate oxidase) (Nodule specific uricase). (Kidney bean, French bean), blastp match of 54% identity and 2.0e-27 P-value to SP|P53763|URIC_PHAVU Uricase II (EC 1.7.3.3) (Urate oxidase) (Nodule specific uricase). (Kidney bean, French bean) {Phaseolus vulgaris}  
At2g23860	chr2:010157005	0.0	W/10157005-10157669	AT2G23860.1  pseudogenic_transcript  pseudo  gene_syn T29E15.6, T29E15_6  note pseudogene, similar to VAP27, blastp match of 56% identity and 1.3e-25 P-value to GP|6688926|emb|CAB65313.1||AJ251365 VAP27 {Nicotiana plumbaginifolia}  
At2g23870	chr2:010163417	0.0	W/10163417-10164000	AT2G23870.1  pseudogenic_transcript  pseudo  gene_syn T29E15.7  note pseudogene, similar to beta-amyrin synthase, blastp match of 37% identity and 3.3e-13 P-value to GP|8918271|dbj|BAA97558.1||AB034802 beta-amyrin synthase {Pisum sativum}  
At2g23880	chr2:010165992	0.0	C/10165992-10170262	AT2G23880.1  mRNA_TE_gene  pseudo  gene_syn T29E15.8, T29E15_8  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 4.4e-41 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At2g23890	chr2:010170680	0.0	W/10170680-10170727,10170815-10171058,10171133-10171269,10171345-10171494,10171566-10171667,10171763-10171927,10172011-10172121,10172307-10172404,10172513-10172636,10172728-10172817,10172945-10172989,10173158-10173478,10173596-10173622	AT2G23890.1  CDS  gene_syn T29E15.9, T29E15_9  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function 5 -nucleotidase activity|GO:0008253||ISS  product 5  nucleotidase family protein  note 5  nucleotidase family protein; FUNCTIONS IN: 5 -nucleotidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IG, 5&apos;-nucleotidase (InterPro:IPR008380), Purine 5&apos;-nucleotidase (InterPro:IPR016695); BEST Arabidopsis thaliana protein match is: 5  nucleotidase family protein (TAIR:AT1G75210.1); Has 498 Blast hits to 498 proteins in 82 species: Archae - 0; Bacteria - 34; Metazoa - 377; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT2G23890.1p  transcript_id AT2G23890.1  protein_id AT2G23890.1p  transcript_id AT2G23890.1  
At2g23900	chr2:010174556	0.0	W/10174556-10174588,10174694-10175035,10175152-10175272,10175418-10175666,10175801-10176489	AT2G23900.1  CDS  gene_syn T29E15.10, T29E15_10  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT3G48950.1); Has 2237 Blast hits to 2231 proteins in 306 species: Archae - 2; Bacteria - 569; Metazoa - 8; Fungi - 715; Plants - 835; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT2G23900.1p  transcript_id AT2G23900.1  protein_id AT2G23900.1p  transcript_id AT2G23900.1  
At2g23910	chr2:010177902	0.0	W/10177902-10178025,10178259-10178416,10178522-10178713,10179171-10179324,10179425-10179617,10179696-10179789	AT2G23910.1  CDS  gene_syn T29E15.11, T29E15_11  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  go_component cellular_component|GO:0005575||ND  go_process lignin biosynthetic process|GO:0009809||ISS  go_function cinnamoyl-CoA reductase activity|GO:0016621||ISS  product cinnamoyl-CoA reductase-related  note cinnamoyl-CoA reductase-related; FUNCTIONS IN: coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamoyl-CoA reductase-related (TAIR:AT4G30470.1); Has 2416 Blast hits to 2412 proteins in 422 species: Archae - 0; Bacteria - 329; Metazoa - 73; Fungi - 205; Plants - 1191; Viruses - 0; Other Eukaryotes - 618 (source: NCBI BLink).  protein_id AT2G23910.1p  transcript_id AT2G23910.1  protein_id AT2G23910.1p  transcript_id AT2G23910.1  
At2g23920	chr2:010180998	0.0	W/10180998-10181097,10181141-10181211	AT2G23920.1  CDS  gene_syn T29E15.12, T29E15_12  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  product unknown protein  note unknown protein; INVOLVED IN: N-terminal protein myristoylation; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G23920.1p  transcript_id AT2G23920.1  protein_id AT2G23920.1p  transcript_id AT2G23920.1  
At2g23930	chr2:010182353	0.0	W/10182353-10182387,10182492-10182514,10182761-10182882,10182964-10183026	AT2G23930.1  CDS  gene_syn PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G, SNRNP-G, T29E15.13, T29E15_13  gene SNRNP-G  go_component nucleus|GO:0005634||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_function molecular_function|GO:0003674||ND  product SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G)  note PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G (SNRNP-G); FUNCTIONS IN: molecular_function unknown; LOCATED IN: small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative (TAIR:AT3G11500.1); Has 892 Blast hits to 892 proteins in 193 species: Archae - 86; Bacteria - 0; Metazoa - 373; Fungi - 185; Plants - 110; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).  protein_id AT2G23930.1p  transcript_id AT2G23930.1  protein_id AT2G23930.1p  transcript_id AT2G23930.1  
At2g23930	chr2:010182496	0.0	W/10182496-10182514,10182761-10182882,10182964-10183026	AT2G23930.2  CDS  gene_syn PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G, SNRNP-G, T29E15.13, T29E15_13  gene SNRNP-G  go_component nucleus|GO:0005634||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_function molecular_function|GO:0003674||ND  product SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G)  note PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G (SNRNP-G); FUNCTIONS IN: molecular_function unknown; LOCATED IN: small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative (TAIR:AT3G11500.1); Has 757 Blast hits to 757 proteins in 179 species: Archae - 69; Bacteria - 0; Metazoa - 314; Fungi - 174; Plants - 97; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).  protein_id AT2G23930.2p  transcript_id AT2G23930.2  protein_id AT2G23930.2p  transcript_id AT2G23930.2  
At2g23940	chr2:010184199	0.0	W/10184199-10184282,10184381-10184574,10184687-10184771,10184854-10184919,10185005-10185097	AT2G23940.1  CDS  gene_syn T29E15.14, T29E15_14  go_component plasma membrane|GO:0005886|17317660|IDA  product unknown protein  note unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF788 (InterPro:IPR008506); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30500.1); Has 231 Blast hits to 231 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 101; Fungi - 70; Plants - 27; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT2G23940.1p  transcript_id AT2G23940.1  protein_id AT2G23940.1p  transcript_id AT2G23940.1  
At2g23945	chr2:010185229	0.0	C/10185229-10186605	AT2G23945.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  product chloroplast nucleoid DNA-binding protein-related  note chloroplast nucleoid DNA-binding protein-related; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT4G30030.1); Has 1265 Blast hits to 1259 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 48; Plants - 984; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT2G23945.1p  transcript_id AT2G23945.1  protein_id AT2G23945.1p  transcript_id AT2G23945.1  
At2g23950	chr2:010189867	0.0	C/10189867-10189969,10189624-10189756,10189471-10189542,10189236-10189379,10189073-10189144,10188938-10188997,10188758-10188858,10188536-10188664,10188107-10188451,10187643-10188022,10187204-10187569	AT2G23950.1  CDS  gene_syn T29E15.15, T29E15_15  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat family protein / protein kinase family protein  note leucine-rich repeat family protein / protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / protein kinase family protein (TAIR:AT4G30520.1); Has 119542 Blast hits to 86906 proteins in 3212 species: Archae - 63; Bacteria - 8853; Metazoa - 42293; Fungi - 5836; Plants - 46711; Viruses - 394; Other Eukaryotes - 15392 (source: NCBI BLink).  protein_id AT2G23950.1p  transcript_id AT2G23950.1  protein_id AT2G23950.1p  transcript_id AT2G23950.1  
At2g23960	chr2:010196059	0.0	W/10196059-10196370,10197074-10197403,10197497-10197610	AT2G23960.1  CDS  gene_syn T29E15.16, T29E15_16  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process defense response|GO:0006952||ISS  product defense-related protein, putative  note defense-related protein, putative; FUNCTIONS IN: catalytic activity; INVOLVED IN: defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, F mature embryo stage; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: defense-related protein, putative (TAIR:AT4G30530.1); Has 4393 Blast hits to 4393 proteins in 757 species: Archae - 189; Bacteria - 1493; Metazoa - 4; Fungi - 129; Plants - 55; Viruses - 0; Other Eukaryotes - 2523 (source: NCBI BLink).  protein_id AT2G23960.1p  transcript_id AT2G23960.1  protein_id AT2G23960.1p  transcript_id AT2G23960.1  
At2g23970	chr2:010199698	0.0	W/10199698-10200012,10200558-10200887,10200971-10201081	AT2G23970.1  CDS  gene_syn T29E15.17, T29E15_17  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  product defense-related protein, putative  note defense-related protein, putative; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, sepal, flower, pollen tube; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: glutamine amidotransferase class-I domain-containing protein (TAIR:AT4G30550.1); Has 4262 Blast hits to 4262 proteins in 788 species: Archae - 195; Bacteria - 1606; Metazoa - 9; Fungi - 124; Plants - 51; Viruses - 3; Other Eukaryotes - 2274 (source: NCBI BLink).  protein_id AT2G23970.1p  transcript_id AT2G23970.1  protein_id AT2G23970.1p  transcript_id AT2G23970.1  
At2g23980	chr2:010203941	0.0	C/10203941-10204011,10203277-10203862,10202981-10203193,10202598-10202911,10202404-10202515,10202069-10202305,10201276-10201986	AT2G23980.1  CDS  gene_syn ATCNGC6, CNGC6, CYCLIC NUCLEOTIDE GATED CHANNEL 6, T29E15.18, T29E15_18  gene ATCNGC6  function member of Cyclic nucleotide gated channel family  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function calmodulin binding|GO:0005516|11782485|IEP  go_function calmodulin binding|GO:0005516|11782485|TAS  product ATCNGC6; calmodulin binding  note ATCNGC6; FUNCTIONS IN: calmodulin binding; INVOLVED IN: response to cadmium ion; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding, conserved site (InterPro:IPR018488), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: ATCNGC9 (CYCLIC NUCLEOTIDE GATED CHANNEL 9); calmodulin binding / cyclic nucleotide binding / ion channel (TAIR:AT4G30560.1); Has 2804 Blast hits to 2676 proteins in 208 species: Archae - 0; Bacteria - 32; Metazoa - 1310; Fungi - 15; Plants - 661; Viruses - 0; Other Eukaryotes - 786 (source: NCBI BLink).  protein_id AT2G23980.1p  transcript_id AT2G23980.1  protein_id AT2G23980.1p  transcript_id AT2G23980.1  
At2g23985	chr2:010205658	0.0	W/10205658-10205693,10206104-10206283	AT2G23985.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G23985.2p  transcript_id AT2G23985.2  protein_id AT2G23985.2p  transcript_id AT2G23985.2  
At2g23985	chr2:010205658	0.0	W/10205658-10205693,10206113-10206283	AT2G23985.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G23985.1p  transcript_id AT2G23985.1  protein_id AT2G23985.1p  transcript_id AT2G23985.1  
At2g23990	chr2:010207724	0.0	C/10207724-10207911,10207460-10207512,10206835-10207274	AT2G23990.2  CDS  gene_syn T29E15.19, T29E15_19  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function copper ion binding|GO:0005507||ISS  product plastocyanin-like domain-containing protein  note plastocyanin-like domain-containing protein; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to membrane; EXPRESSED IN: embryo; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: plastocyanin-like domain-containing protein (TAIR:AT4G30590.1); Has 3751 Blast hits to 2475 proteins in 347 species: Archae - 20; Bacteria - 649; Metazoa - 256; Fungi - 321; Plants - 1624; Viruses - 386; Other Eukaryotes - 495 (source: NCBI BLink).  protein_id AT2G23990.2p  transcript_id AT2G23990.2  protein_id AT2G23990.2p  transcript_id AT2G23990.2  
At2g23990	chr2:010207728	0.0	C/10207728-10207911,10206835-10207274	AT2G23990.1  CDS  gene_syn T29E15.19, T29E15_19  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function copper ion binding|GO:0005507||ISS  product plastocyanin-like domain-containing protein  note plastocyanin-like domain-containing protein; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to membrane; EXPRESSED IN: embryo; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: plastocyanin-like domain-containing protein (TAIR:AT4G30590.1); Has 3882 Blast hits to 2603 proteins in 350 species: Archae - 20; Bacteria - 642; Metazoa - 257; Fungi - 323; Plants - 1761; Viruses - 386; Other Eukaryotes - 493 (source: NCBI BLink).  protein_id AT2G23990.1p  transcript_id AT2G23990.1  protein_id AT2G23990.1p  transcript_id AT2G23990.1  
At2g24000	chr2:010209475	0.0	W/10209475-10209721,10211706-10211813,10211979-10212074,10212543-10212635,10212820-10212905,10212988-10213397,10213591-10213692,10213790-10214042	AT2G24000.1  CDS  gene_syn T29E15.20, T29E15_20, scpl22, serine carboxypeptidase-like 22  gene scpl22  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl22 (serine carboxypeptidase-like 22); serine-type carboxypeptidase  note serine carboxypeptidase-like 22 (scpl22); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: BRS1 (BRI1 SUPPRESSOR 1); serine-type carboxypeptidase (TAIR:AT4G30610.1); Has 2441 Blast hits to 2388 proteins in 259 species: Archae - 0; Bacteria - 93; Metazoa - 575; Fungi - 562; Plants - 894; Viruses - 0; Other Eukaryotes - 317 (source: NCBI BLink).  protein_id AT2G24000.1p  transcript_id AT2G24000.1  protein_id AT2G24000.1p  transcript_id AT2G24000.1  
At2g24000	chr2:010209475	0.0	W/10209475-10209721,10211706-10211813,10212820-10212905,10212988-10213397,10213591-10213692,10213790-10214042	AT2G24000.2  CDS  gene_syn T29E15.20, T29E15_20, scpl22, serine carboxypeptidase-like 22  gene scpl22  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl22 (serine carboxypeptidase-like 22); serine-type carboxypeptidase  note serine carboxypeptidase-like 22 (scpl22); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: BRS1 (BRI1 SUPPRESSOR 1); serine-type carboxypeptidase (TAIR:AT4G30610.1); Has 2633 Blast hits to 2021 proteins in 199 species: Archae - 0; Bacteria - 8; Metazoa - 661; Fungi - 572; Plants - 1135; Viruses - 0; Other Eukaryotes - 257 (source: NCBI BLink).  protein_id AT2G24000.2p  transcript_id AT2G24000.2  protein_id AT2G24000.2p  transcript_id AT2G24000.2  
At2g24010	chr2:010214714	0.0	W/10214714-10214870,10215412-10215456,10215894-10216001,10216099-10216194,10216317-10216409,10216505-10216593,10216669-10217150,10217218-10217323,10217396-10217542	AT2G24010.1  CDS  gene_syn T29E15.21, T29E15_21, scpl23, serine carboxypeptidase-like 23  gene scpl23  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl23 (serine carboxypeptidase-like 23); serine-type carboxypeptidase  note serine carboxypeptidase-like 23 (scpl23); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl22 (serine carboxypeptidase-like 22); serine-type carboxypeptidase (TAIR:AT2G24000.1); Has 2469 Blast hits to 2402 proteins in 232 species: Archae - 0; Bacteria - 37; Metazoa - 585; Fungi - 572; Plants - 976; Viruses - 0; Other Eukaryotes - 299 (source: NCBI BLink).  protein_id AT2G24010.1p  transcript_id AT2G24010.1  protein_id AT2G24010.1p  transcript_id AT2G24010.1  
At2g24020	chr2:010219209	0.0	C/10219209-10219269,10218843-10218985,10218605-10218705,10218474-10218513,10218180-10218251,10218036-10218092,10217869-10217943	AT2G24020.1  CDS  gene_syn T29E15.22, T29E15_22  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0133 (InterPro:IPR004401); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30620.1); Has 1553 Blast hits to 1553 proteins in 610 species: Archae - 0; Bacteria - 1223; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 301 (source: NCBI BLink).  protein_id AT2G24020.1p  transcript_id AT2G24020.1  protein_id AT2G24020.1p  transcript_id AT2G24020.1  
At2g24030	chr2:010221218	0.0	C/10221218-10221505,10220994-10221128,10220183-10220884	AT2G24030.2  CDS  gene_syn T29E15.23, T29E15_23  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product nucleic acid binding / zinc ion binding  note nucleic acid binding / zinc ion binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Zinc finger, U1-type (InterPro:IPR003604); Has 76 Blast hits to 65 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 4; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G24030.2p  transcript_id AT2G24030.2  protein_id AT2G24030.2p  transcript_id AT2G24030.2  
At2g24030	chr2:010221896	0.0	C/10221896-10222010,10221218-10221633,10220994-10221128,10220183-10220884	AT2G24030.1  CDS  gene_syn T29E15.23, T29E15_23  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product nucleic acid binding / zinc ion binding  note nucleic acid binding / zinc ion binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, U1-type (InterPro:IPR003604); Has 100 Blast hits to 88 proteins in 25 species: Archae - 0; Bacteria - 2; Metazoa - 28; Fungi - 4; Plants - 60; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT2G24030.1p  transcript_id AT2G24030.1  protein_id AT2G24030.1p  transcript_id AT2G24030.1  
At2g24040	chr2:010224028	0.0	W/10224028-10224117,10224394-10224531	AT2G24040.1  CDS  gene_syn T29E15.24, T29E15_24  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process response to cold|GO:0009409||ISS  go_process hyperosmotic salinity response|GO:0042538||ISS  product hydrophobic protein, putative / low temperature and salt responsive protein, putative  note hydrophobic protein, putative / low temperature and salt responsive protein, putative; INVOLVED IN: hyperosmotic salinity response, response to cold; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0057 (InterPro:IPR000612); BEST Arabidopsis thaliana protein match is: hydrophobic protein, putative / low temperature and salt responsive protein, putative (TAIR:AT4G28088.1); Has 526 Blast hits to 526 proteins in 160 species: Archae - 0; Bacteria - 141; Metazoa - 39; Fungi - 151; Plants - 185; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT2G24040.1p  transcript_id AT2G24040.1  protein_id AT2G24040.1p  transcript_id AT2G24040.1  
At2g24050	chr2:010228310	0.0	C/10228310-10228456,10228043-10228102,10227864-10227965,10227645-10227776,10227466-10227563,10227285-10227372,10226614-10227207,10225500-10226522	AT2G24050.1  CDS  gene_syn T29E15.25, T29E15_25  go_process RNA metabolic process|GO:0016070||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_process translation|GO:0006412||ISS  go_function RNA binding|GO:0003723||ISS  product MIF4G domain-containing protein / MA3 domain-containing protein  note MIF4G domain-containing protein / MA3 domain-containing protein; FUNCTIONS IN: protein binding, RNA binding, binding; INVOLVED IN: translation, RNA metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891), Armadillo-type fold (InterPro:IPR016024), MIF4G-like, type 3 (InterPro:IPR003890), MIF4-like, type 1/2/3 (InterPro:IPR016021); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 4F, putative / eIF-4F, putative (TAIR:AT5G57870.2); Has 1267 Blast hits to 1038 proteins in 169 species: Archae - 0; Bacteria - 6; Metazoa - 631; Fungi - 139; Plants - 296; Viruses - 3; Other Eukaryotes - 192 (source: NCBI BLink).  protein_id AT2G24050.1p  transcript_id AT2G24050.1  protein_id AT2G24050.1p  transcript_id AT2G24050.1  
At2g24060	chr2:010229453	0.0	W/10229453-10229739,10229821-10229860,10229947-10230006,10230371-10230423,10230511-10230560,10230652-10230685,10230783-10230855,10230939-10231031,10231142-10231390	AT2G24060.1  CDS  gene_syn T29E15.26, T29E15_26  go_component chloroplast|GO:0009507|18431481|IDA  go_process translational initiation|GO:0006413||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product translation initiation factor 3 (IF-3) family protein  note translation initiation factor 3 (IF-3) family protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor 3 (InterPro:IPR001288); BEST Arabidopsis thaliana protein match is: translation initiation factor 3 (IF-3) family protein (TAIR:AT4G30690.1); Has 17514 Blast hits to 8661 proteins in 1545 species: Archae - 56; Bacteria - 6187; Metazoa - 2053; Fungi - 689; Plants - 758; Viruses - 336; Other Eukaryotes - 7435 (source: NCBI BLink).  protein_id AT2G24060.1p  transcript_id AT2G24060.1  protein_id AT2G24060.1p  transcript_id AT2G24060.1  
At2g24070	chr2:010232706	0.0	C/10232706-10233986,10232507-10232626,10232308-10232424,10232022-10232219,10231822-10231935	AT2G24070.1  CDS  gene_syn T29E15.27, T29E15_27  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: shoot apex, inflorescence meristem, flower, root, carpel; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF566 (InterPro:IPR007573); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30710.1); Has 6717 Blast hits to 2484 proteins in 274 species: Archae - 0; Bacteria - 688; Metazoa - 2256; Fungi - 741; Plants - 239; Viruses - 44; Other Eukaryotes - 2749 (source: NCBI BLink).  protein_id AT2G24070.1p  transcript_id AT2G24070.1  protein_id AT2G24070.1p  transcript_id AT2G24070.1  
At2g24070	chr2:010232706	0.0	C/10232706-10233986,10232507-10232626,10232308-10232424,10232022-10232219,10231822-10231935	AT2G24070.2  CDS  gene_syn T29E15.27, T29E15_27  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: shoot apex, inflorescence meristem, flower, root, carpel; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF566 (InterPro:IPR007573); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30710.1); Has 6717 Blast hits to 2484 proteins in 274 species: Archae - 0; Bacteria - 688; Metazoa - 2256; Fungi - 741; Plants - 239; Viruses - 44; Other Eukaryotes - 2749 (source: NCBI BLink).  protein_id AT2G24070.2p  transcript_id AT2G24070.2  protein_id AT2G24070.2p  transcript_id AT2G24070.2  
At2g24080	chr2:010238374	0.0	C/10238374-10238779,10237604-10238322	AT2G24080.1  CDS  gene_syn T29E15.28, T29E15_28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G27540.2); Has 139 Blast hits to 134 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G24080.1p  transcript_id AT2G24080.1  protein_id AT2G24080.1p  transcript_id AT2G24080.1  
At2g24090	chr2:010242038	0.0	W/10242038-10242280,10242631-10242747,10243339-10243416	AT2G24090.1  CDS  gene_syn T29E15.29, T29E15_29  go_component chloroplast|GO:0009507|18431481|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L35 family protein  note ribosomal protein L35 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L35, conserved site (InterPro:IPR018265), Ribosomal protein L35 (InterPro:IPR001706); Has 3401 Blast hits to 3401 proteins in 1037 species: Archae - 0; Bacteria - 2119; Metazoa - 6; Fungi - 2; Plants - 42; Viruses - 0; Other Eukaryotes - 1232 (source: NCBI BLink).  protein_id AT2G24090.1p  transcript_id AT2G24090.1  protein_id AT2G24090.1p  transcript_id AT2G24090.1  
At2g24100	chr2:010244921	0.0	W/10244921-10245055,10245141-10245380,10245447-10245620,10245704-10245810,10245891-10246141,10246222-10246715	AT2G24100.1  CDS  gene_syn F27D4.1, F27D4_1  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30780.1); Has 44 Blast hits to 44 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT2G24100.1p  transcript_id AT2G24100.1  protein_id AT2G24100.1p  transcript_id AT2G24100.1  
At2g24103	chr2:010247206	0.0	W/10247206-10247462	AT2G24103.1  miRNA  gene_syn MICRORNA831A, MIR831A  gene MIR831A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UGAUCUCUUCGUACUCUUCUUG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR831A (MICRORNA831A); miRNA  transcript_id AT2G24103.1  
At2g24110	chr2:010247817	0.0	C/10247817-10248834	AT2G24110.1  pseudogenic_transcript  pseudo  gene_syn F27D4.2  note 40S ribosomal protein S11, expressed pseudogene, similar to GB:J05216; blastp match of 76% identity and 8.9e-54 P-value to GP|24417185|dbj|BAC22544.1||AP003932 putative ribosomal protein S11 {Oryza sativa (japonica cultivar-group)}  
At2g24120	chr2:010253685	0.0	C/10253685-10254530,10253420-10253608,10253191-10253324,10252967-10253036,10252831-10252889,10252572-10252689,10252368-10252481,10252091-10252222,10251587-10252003,10251290-10251340,10251126-10251196,10250906-10250990,10250671-10250823,10250509-10250583,10250325-10250414,10250139-10250222	AT2G24120.2  CDS  gene_syn F27D4.3, F27D4_3, PDE319, PIGMENT DEFECTIVE 319, SCA3, SCABRA 3  gene SCA3  go_process transcription|GO:0006350||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process transcription|GO:0006350||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product SCA3 (SCABRA 3); DNA binding / DNA-directed RNA polymerase  note SCABRA 3 (SCA3); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, bacteriophage type (InterPro:IPR002092); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase (RPOT2) (TAIR:AT5G15700.1); Has 977 Blast hits to 967 proteins in 241 species: Archae - 0; Bacteria - 20; Metazoa - 118; Fungi - 156; Plants - 129; Viruses - 102; Other Eukaryotes - 452 (source: NCBI BLink).  protein_id AT2G24120.2p  transcript_id AT2G24120.2  protein_id AT2G24120.2p  transcript_id AT2G24120.2  
At2g24120	chr2:010253685	0.0	C/10253685-10254530,10253420-10253608,10253191-10253324,10252967-10253036,10252831-10252889,10252572-10252689,10252368-10252481,10252091-10252222,10251587-10252003,10251290-10251340,10251126-10251196,10250906-10250990,10250671-10250823,10250509-10250583,10250325-10250414,10250175-10250222,10249979-10250093,10249795-10249898,10249358-10249468	AT2G24120.1  CDS  gene_syn F27D4.3, F27D4_3, PDE319, PIGMENT DEFECTIVE 319, SCA3, SCABRA 3  gene SCA3  go_process transcription|GO:0006350||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process transcription|GO:0006350||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product SCA3 (SCABRA 3); DNA binding / DNA-directed RNA polymerase  note SCABRA 3 (SCA3); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, bacteriophage type (InterPro:IPR002092); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase (RPOT2) (TAIR:AT5G15700.1); Has 1095 Blast hits to 1080 proteins in 246 species: Archae - 0; Bacteria - 20; Metazoa - 122; Fungi - 162; Plants - 133; Viruses - 104; Other Eukaryotes - 554 (source: NCBI BLink).  protein_id AT2G24120.1p  transcript_id AT2G24120.1  protein_id AT2G24120.1p  transcript_id AT2G24120.1  
At2g24130	chr2:010258148	0.0	W/10258148-10258238,10258284-10260725,10260811-10261220	AT2G24130.1  CDS  gene_syn F27D4.4, F27D4_4  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT3G47580.1); Has 146276 Blast hits to 97729 proteins in 3670 species: Archae - 103; Bacteria - 12698; Metazoa - 61170; Fungi - 7140; Plants - 46264; Viruses - 302; Other Eukaryotes - 18599 (source: NCBI BLink).  protein_id AT2G24130.1p  transcript_id AT2G24130.1  protein_id AT2G24130.1p  transcript_id AT2G24130.1  
At2g24140	chr2:010262856	0.0	C/10262856-10263653,10262752-10262775	AT2G24140.1  CDS  gene_syn F27D4.5, F27D4_5  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30830.1); Has 843 Blast hits to 780 proteins in 133 species: Archae - 5; Bacteria - 32; Metazoa - 343; Fungi - 50; Plants - 148; Viruses - 2; Other Eukaryotes - 263 (source: NCBI BLink).  protein_id AT2G24140.1p  transcript_id AT2G24140.1  protein_id AT2G24140.1p  transcript_id AT2G24140.1  
At2g24150	chr2:010267110	0.0	C/10267110-10267345,10266924-10267022,10266784-10266823,10265632-10266291	AT2G24150.1  CDS  gene_syn F27D4.6, F27D4_6, HHP3, heptahelical protein 3  gene HHP3  function heptahelical transmembrane protein HHP3  go_component integral to membrane|GO:0016021||IEA  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_process response to hormone stimulus|GO:0009725|16263907|IEP  go_process response to sucrose stimulus|GO:0009744|16263907|IEP  go_function receptor activity|GO:0004872|16263907|ISS  product HHP3 (heptahelical protein 3); receptor  note heptahelical protein 3 (HHP3); FUNCTIONS IN: receptor activity; INVOLVED IN: response to oxidative stress, response to hormone stimulus, response to sucrose stimulus; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hly-III related (InterPro:IPR004254); BEST Arabidopsis thaliana protein match is: HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2); receptor (TAIR:AT4G30850.2); Has 1330 Blast hits to 1315 proteins in 226 species: Archae - 0; Bacteria - 148; Metazoa - 722; Fungi - 224; Plants - 114; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT2G24150.1p  transcript_id AT2G24150.1  protein_id AT2G24150.1p  transcript_id AT2G24150.1  
At2g24160	chr2:010268008	0.0	C/10268008-10270612	AT2G24160.1  pseudogenic_transcript  pseudo  gene_syn F27D4.7, F27D4_7  note pseudogene, leucine rich repeat protein family, contains leucine rich-repeat domains Pfam:PF00560, INTERPRO:IPR001611; contains some similarity to Cf-4 (Lycopersicon hirsutum) gi|2808683|emb|CAA05268; blastp match of 37% identity and 8.4e-98 P-value to GP|2808683|emb|CAA05268.1||AJ002235 Cf-4 {Lycopersicon hirsutum}  
At2g24165	chr2:010272672	0.0	C/10272672-10273595	AT2G24165.1  pseudogenic_transcript  pseudo  note pseudogene, similar to HcrVf3 protein, blastp match of 37% identity and 5.1e-32 P-value to GP|14330718|emb|CAC40827.1||AJ297741 HcrVf3 protein {Malus floribunda}  
At2g24170	chr2:010276787	0.0	C/10276787-10276894,10276278-10276442,10276072-10276181,10275879-10275987,10275693-10275805,10274307-10275615	AT2G24170.1  CDS  gene_syn F27D4.8, F27D4_8  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_component integral to membrane|GO:0016021||ISS  product endomembrane protein 70, putative  note endomembrane protein 70, putative; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: endomembrane protein 70, putative (TAIR:AT5G10840.1); Has 1023 Blast hits to 1007 proteins in 164 species: Archae - 0; Bacteria - 2; Metazoa - 447; Fungi - 144; Plants - 237; Viruses - 0; Other Eukaryotes - 193 (source: NCBI BLink).  protein_id AT2G24170.1p  transcript_id AT2G24170.1  protein_id AT2G24170.1p  transcript_id AT2G24170.1  
At2g24180	chr2:010281890	0.0	W/10281890-10282795,10282984-10283589	AT2G24180.1  CDS  gene_syn CYP71B6, CYTOCHROME P450 71B6, CYTOCHROME P450 MONOOXYGENASE 71B6, F27D4.9, F27D4_9  gene CYP71B6  function cytochrome P450 monooxygenase  go_component mitochondrion|GO:0005739|15276431|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_function oxygen binding|GO:0019825||ISS  product CYP71B6 (CYTOCHROME P450 71B6); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYTOCHROME P450 71B6 (CYP71B6); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: mitochondrion, endoplasmic reticulum, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP71B35; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G26310.1); Has 23085 Blast hits to 22952 proteins in 1205 species: Archae - 23; Bacteria - 1781; Metazoa - 10283; Fungi - 4415; Plants - 5774; Viruses - 3; Other Eukaryotes - 806 (source: NCBI BLink).  protein_id AT2G24180.1p  transcript_id AT2G24180.1  protein_id AT2G24180.1p  transcript_id AT2G24180.1  
At2g24190	chr2:010284915	0.0	C/10284915-10284934,10284589-10284841,10284441-10284506,10284195-10284365,10283740-10284120	AT2G24190.1  CDS  gene_syn F27D4.10, F27D4_10  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT3G61220.1); Has 47630 Blast hits to 47585 proteins in 1897 species: Archae - 343; Bacteria - 27253; Metazoa - 4043; Fungi - 2393; Plants - 1315; Viruses - 0; Other Eukaryotes - 12283 (source: NCBI BLink).  protein_id AT2G24190.1p  transcript_id AT2G24190.1  protein_id AT2G24190.1p  transcript_id AT2G24190.1  
At2g24190	chr2:010284915	0.0	C/10284915-10284934,10284589-10284856,10284441-10284506,10284195-10284365,10283740-10284120	AT2G24190.2  CDS  gene_syn F27D4.10, F27D4_10  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT3G61220.1); Has 47271 Blast hits to 47226 proteins in 1892 species: Archae - 343; Bacteria - 27046; Metazoa - 4022; Fungi - 2358; Plants - 1316; Viruses - 0; Other Eukaryotes - 12186 (source: NCBI BLink).  protein_id AT2G24190.2p  transcript_id AT2G24190.2  protein_id AT2G24190.2p  transcript_id AT2G24190.2  
At2g24200	chr2:010289400	0.0	C/10289400-10289450,10288866-10289274,10288576-10288770,10288254-10288479,10288024-10288150,10287851-10287946,10287689-10287766,10287537-10287597,10287250-10287437,10287017-10287148	AT2G24200.1  CDS  gene_syn F27D4.11, F27D4_11  go_component vacuole|GO:0005773|15215502|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function aminopeptidase activity|GO:0004177||IEA  go_function metalloexopeptidase activity|GO:0008235||IEA  go_function manganese ion binding|GO:0030145||IEA  go_process proteolysis|GO:0006508||ISS  go_function aminopeptidase activity|GO:0004177||ISS  product cytosol aminopeptidase  note cytosol aminopeptidase; FUNCTIONS IN: manganese ion binding, metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: response to cadmium ion, proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M17, leucyl aminopeptidase, C-terminal (InterPro:IPR000819), Peptidase M17, leucyl aminopeptidase, N-terminal (InterPro:IPR008283), Peptidase M17, leucyl aminopeptidase (InterPro:IPR011356); BEST Arabidopsis thaliana protein match is: cytosol aminopeptidase family protein (TAIR:AT4G30920.1); Has 7373 Blast hits to 7371 proteins in 1220 species: Archae - 15; Bacteria - 3177; Metazoa - 613; Fungi - 19; Plants - 75; Viruses - 0; Other Eukaryotes - 3474 (source: NCBI BLink).  protein_id AT2G24200.1p  transcript_id AT2G24200.1  protein_id AT2G24200.1p  transcript_id AT2G24200.1  
At2g24200	chr2:010289400	0.0	C/10289400-10289450,10288866-10289274,10288576-10288770,10288254-10288479,10288024-10288150,10287851-10287946,10287689-10287766,10287537-10287597,10287250-10287437,10287017-10287148	AT2G24200.2  CDS  gene_syn F27D4.11, F27D4_11  go_function aminopeptidase activity|GO:0004177||IEA  go_function metalloexopeptidase activity|GO:0008235||IEA  go_function manganese ion binding|GO:0030145||IEA  go_process proteolysis|GO:0006508||ISS  go_function aminopeptidase activity|GO:0004177||ISS  product cytosol aminopeptidase  note cytosol aminopeptidase; FUNCTIONS IN: manganese ion binding, metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M17, leucyl aminopeptidase, C-terminal (InterPro:IPR000819), Peptidase M17, leucyl aminopeptidase, N-terminal (InterPro:IPR008283), Peptidase M17, leucyl aminopeptidase (InterPro:IPR011356); BEST Arabidopsis thaliana protein match is: cytosol aminopeptidase family protein (TAIR:AT4G30920.1); Has 7373 Blast hits to 7371 proteins in 1220 species: Archae - 15; Bacteria - 3177; Metazoa - 613; Fungi - 19; Plants - 75; Viruses - 0; Other Eukaryotes - 3474 (source: NCBI BLink).  protein_id AT2G24200.2p  transcript_id AT2G24200.2  protein_id AT2G24200.2p  transcript_id AT2G24200.2  
At2g24205	chr2:010291418	0.0	W/10291418-10291762	AT2G24205.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44495.1); Has 62 Blast hits to 59 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G24205.1p  transcript_id AT2G24205.1  protein_id AT2G24205.1p  transcript_id AT2G24205.1  
At2g24210	chr2:010294330	0.0	W/10294330-10294536,10294637-10294901,10295053-10295440,10295828-10296046,10296192-10296330,10296610-10296861,10297096-10297401	AT2G24210.1  CDS  gene_syn F27D4.12, F27D4_12, TPS10, terpene synthase 10  gene TPS10  go_process response to wounding|GO:0009611|16021335|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16021335|IEP  go_process monoterpenoid biosynthetic process|GO:0016099|10700382|IDA  go_function (E)-beta-ocimene synthase activity|GO:0034768|10700382|IDA  go_function myrcene synthase activity|GO:0050551|10700382|IDA  product TPS10 (terpene synthase 10); (E)-beta-ocimene synthase/ myrcene synthase  note terpene synthase 10 (TPS10); FUNCTIONS IN: myrcene synthase activity, (E)-beta-ocimene synthase activity; INVOLVED IN: response to jasmonic acid stimulus, monoterpenoid biosynthetic process, response to wounding; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: ATTPS-CIN (terpene synthase-like sequence-1,8-cineole); (E)-beta-ocimene synthase/ myrcene synthase (TAIR:AT3G25830.1); Has 1100 Blast hits to 1084 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1097; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G24210.1p  transcript_id AT2G24210.1  protein_id AT2G24210.1p  transcript_id AT2G24210.1  
At2g24220	chr2:010300603	0.0	W/10300603-10301688	AT2G24220.1  CDS  gene_syn ARABIDOPSIS THALIANA PURINE PERMEASE 5, ATPUP5, F27D4.13, F27D4_13  gene ATPUP5  function Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.  go_component membrane|GO:0016020|10662864|TAS  go_process purine transport|GO:0006863|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345||ISS  product ATPUP5; purine transmembrane transporter  note ATPUP5; FUNCTIONS IN: purine transmembrane transporter activity; INVOLVED IN: purine transport; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: ATPUP11; purine transmembrane transporter (TAIR:AT1G44750.2); Has 311 Blast hits to 303 proteins in 36 species: Archae - 4; Bacteria - 18; Metazoa - 13; Fungi - 25; Plants - 199; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT2G24220.1p  transcript_id AT2G24220.1  protein_id AT2G24220.1p  transcript_id AT2G24220.1  
At2g24230	chr2:010301979	0.0	C/10301979-10304540	AT2G24230.1  CDS  gene_syn F27D4.14, F27D4_14  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT5G58150.1); Has 109972 Blast hits to 78716 proteins in 2053 species: Archae - 83; Bacteria - 9320; Metazoa - 46632; Fungi - 4885; Plants - 36261; Viruses - 218; Other Eukaryotes - 12573 (source: NCBI BLink).  protein_id AT2G24230.1p  transcript_id AT2G24230.1  protein_id AT2G24230.1p  transcript_id AT2G24230.1  
At2g24240	chr2:010310838	0.0	W/10310838-10312163	AT2G24240.1  CDS  gene_syn F27D4.15, F27D4_15  go_component voltage-gated potassium channel complex|GO:0008076||IEA  go_component membrane|GO:0016020||IEA  go_process potassium ion transport|GO:0006813||IEA  go_function voltage-gated potassium channel activity|GO:0005249||IEA  go_function protein binding|GO:0005515||IEA  go_component voltage-gated potassium channel complex|GO:0008076||ISS  go_component membrane|GO:0016020||ISS  go_process potassium ion transport|GO:0006813||ISS  go_function voltage-gated potassium channel activity|GO:0005249||ISS  product potassium channel tetramerisation domain-containing protein  note potassium channel tetramerisation domain-containing protein; FUNCTIONS IN: protein binding, voltage-gated potassium channel activity; INVOLVED IN: potassium ion transport; LOCATED IN: voltage-gated potassium channel complex, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), BTB/POZ fold (InterPro:IPR011333), Potassium channel, voltage dependent, Kv, tetramerisation (InterPro:IPR003131), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: potassium channel tetramerisation domain-containing protein (TAIR:AT4G30940.1); Has 748 Blast hits to 733 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 614; Fungi - 2; Plants - 67; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT2G24240.1p  transcript_id AT2G24240.1  protein_id AT2G24240.1p  transcript_id AT2G24240.1  
At2g24250	chr2:010313436	0.0	C/10313436-10314560	AT2G24250.1  CDS  gene_syn F27D4.23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G64840.1); Has 60 Blast hits to 58 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G24250.1p  transcript_id AT2G24250.1  protein_id AT2G24250.1p  transcript_id AT2G24250.1  
At2g24250	chr2:010313436	0.0	C/10313436-10314560	AT2G24250.2  CDS  gene_syn F27D4.23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G64840.1); Has 60 Blast hits to 58 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G24250.2p  transcript_id AT2G24250.2  protein_id AT2G24250.2p  transcript_id AT2G24250.2  
At2g24255	chr2:010316053	0.0	C/10316053-10317063	AT2G24255.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, petal, flower, leaf; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G64840.1); Has 54 Blast hits to 52 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G24255.1p  transcript_id AT2G24255.1  protein_id AT2G24255.1p  transcript_id AT2G24255.1  
At2g24260	chr2:010321887	0.0	C/10321887-10322177,10321651-10321821,10321441-10321506,10320833-10320898,10320388-10320444,10319646-10320047	AT2G24260.1  CDS  gene_syn F27D4.17, F27D4_17  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT4G30980.1); Has 1913 Blast hits to 1913 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 133; Fungi - 12; Plants - 1767; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G24260.1p  transcript_id AT2G24260.1  protein_id AT2G24260.1p  transcript_id AT2G24260.1  
At2g24270	chr2:010329457	0.0	C/10329457-10329601,10329058-10329251,10328836-10328964,10328624-10328743,10328414-10328550,10328181-10328336,10327716-10328094,10327519-10327635,10327325-10327438	AT2G24270.1  CDS  gene_syn ALDH11A3, F27D4.18, F27D4_18, NP-GAPDH  gene ALDH11A3  function Encodes a protein with non-phosphorylating NADP-dependent glyceraldehyde-3-phosphate dehydrogenase activity. The activity of the enzyme was determined from leaf extracts; the enzyme has not been purified to confirm activity.  go_process metabolic process|GO:0008152||IEA  go_function 3-chloroallyl aldehyde dehydrogenase activity|GO:0004028||ISS  go_function glyceraldehyde-3-phosphate dehydrogenase (NADP+) activity|GO:0008886|16927206|IDA  product ALDH11A3; 3-chloroallyl aldehyde dehydrogenase/ glyceraldehyde-3-phosphate dehydrogenase (NADP+)  note ALDH11A3; FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, glyceraldehyde-3-phosphate dehydrogenase (NADP+) activity; INVOLVED IN: metabolic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: ALDH10A8; 3-chloroallyl aldehyde dehydrogenase/ oxidoreductase (TAIR:AT1G74920.1); Has 42248 Blast hits to 42028 proteins in 1797 species: Archae - 247; Bacteria - 19922; Metazoa - 2211; Fungi - 1314; Plants - 582; Viruses - 0; Other Eukaryotes - 17972 (source: NCBI BLink).  protein_id AT2G24270.1p  transcript_id AT2G24270.1  protein_id AT2G24270.1p  transcript_id AT2G24270.1  
At2g24270	chr2:010329457	0.0	C/10329457-10329601,10329058-10329251,10328836-10328964,10328624-10328743,10328414-10328550,10328181-10328336,10327716-10328094,10327519-10327635,10327325-10327438	AT2G24270.2  CDS  gene_syn ALDH11A3, F27D4.18, F27D4_18, NP-GAPDH  gene ALDH11A3  function Encodes a protein with non-phosphorylating NADP-dependent glyceraldehyde-3-phosphate dehydrogenase activity. The activity of the enzyme was determined from leaf extracts; the enzyme has not been purified to confirm activity.  go_process metabolic process|GO:0008152||IEA  go_function 3-chloroallyl aldehyde dehydrogenase activity|GO:0004028||ISS  go_function glyceraldehyde-3-phosphate dehydrogenase (NADP+) activity|GO:0008886|16927206|IDA  product ALDH11A3; 3-chloroallyl aldehyde dehydrogenase/ glyceraldehyde-3-phosphate dehydrogenase (NADP+)  note ALDH11A3; FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, glyceraldehyde-3-phosphate dehydrogenase (NADP+) activity; INVOLVED IN: metabolic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: ALDH10A8; 3-chloroallyl aldehyde dehydrogenase/ oxidoreductase (TAIR:AT1G74920.1); Has 42248 Blast hits to 42028 proteins in 1797 species: Archae - 247; Bacteria - 19922; Metazoa - 2211; Fungi - 1314; Plants - 582; Viruses - 0; Other Eukaryotes - 17972 (source: NCBI BLink).  protein_id AT2G24270.2p  transcript_id AT2G24270.2  protein_id AT2G24270.2p  transcript_id AT2G24270.2  
At2g24280	chr2:010334622	0.0	W/10334622-10334981,10335073-10335253,10335362-10335495,10335566-10335678,10335765-10335888,10335962-10336117,10336261-10336413,10336496-10336575,10336647-10336696,10336794-10336927	AT2G24280.1  CDS  gene_syn F27D4.19, F27D4_19  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type peptidase activity|GO:0008236||IEA  go_component lysosome|GO:0005764||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product serine carboxypeptidase S28 family protein  note serine carboxypeptidase S28 family protein; FUNCTIONS IN: serine-type peptidase activity, serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system, lysosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S28 (InterPro:IPR008758); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase S28 family protein (TAIR:AT5G65760.1); Has 915 Blast hits to 887 proteins in 113 species: Archae - 0; Bacteria - 3; Metazoa - 520; Fungi - 132; Plants - 108; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).  protein_id AT2G24280.1p  transcript_id AT2G24280.1  protein_id AT2G24280.1p  transcript_id AT2G24280.1  
At2g24285	chr2:010337381	0.0	C/10337381-10337695	AT2G24285.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G24480.1); Has 12 Blast hits to 12 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G24285.1p  transcript_id AT2G24285.1  protein_id AT2G24285.1p  transcript_id AT2G24285.1  
At2g24290	chr2:010338779	0.0	W/10338779-10338974,10339164-10339187,10339558-10339859	AT2G24290.1  CDS  gene_syn T28I24.2, T28I24_2  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1068 (InterPro:IPR010471); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30996.1); Has 51 Blast hits to 51 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G24290.1p  transcript_id AT2G24290.1  protein_id AT2G24290.1p  transcript_id AT2G24290.1  
At2g24300	chr2:010340913	0.0	W/10340913-10340998,10341272-10341347,10341452-10341510,10341601-10342097,10342205-10342365,10342455-10342658,10342741-10343457	AT2G24300.2  CDS  gene_syn T28I24.3, T28I24_3  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516|11782485|IEP  go_function calmodulin binding|GO:0005516|11782485|TAS  product calmodulin-binding protein  note calmodulin-binding protein; FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Calmodulin binding protein-like (InterPro:IPR012416); BEST Arabidopsis thaliana protein match is: calmodulin-binding protein (TAIR:AT4G31000.1); Has 184 Blast hits to 177 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 182; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G24300.2p  transcript_id AT2G24300.2  protein_id AT2G24300.2p  transcript_id AT2G24300.2  
At2g24300	chr2:010341431	0.0	W/10341431-10341510,10341601-10342097,10342205-10342365,10342455-10342658,10342741-10343457	AT2G24300.1  CDS  gene_syn T28I24.3, T28I24_3  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516|11782485|IEP  go_function calmodulin binding|GO:0005516|11782485|TAS  product calmodulin-binding protein  note calmodulin-binding protein; FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Calmodulin binding protein-like (InterPro:IPR012416); BEST Arabidopsis thaliana protein match is: calmodulin-binding protein (TAIR:AT4G31000.1); Has 181 Blast hits to 175 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 179; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G24300.1p  transcript_id AT2G24300.1  protein_id AT2G24300.1p  transcript_id AT2G24300.1  
At2g24310	chr2:010344361	0.0	W/10344361-10345329	AT2G24310.1  CDS  gene_syn T28I24.4, T28I24_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47170.1); Has 8723 Blast hits to 1984 proteins in 278 species: Archae - 2; Bacteria - 1534; Metazoa - 1862; Fungi - 1225; Plants - 55; Viruses - 46; Other Eukaryotes - 3999 (source: NCBI BLink).  protein_id AT2G24310.1p  transcript_id AT2G24310.1  protein_id AT2G24310.1p  transcript_id AT2G24310.1  
At2g24320	chr2:010346552	0.0	C/10346552-10346829,10346421-10346457,10346117-10346353,10346000-10346047,10345659-10345919	AT2G24320.1  CDS  gene_syn T28I24.5, T28I24_5  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31020.2); Has 2945 Blast hits to 2943 proteins in 497 species: Archae - 2; Bacteria - 747; Metazoa - 529; Fungi - 134; Plants - 157; Viruses - 6; Other Eukaryotes - 1370 (source: NCBI BLink).  protein_id AT2G24320.1p  transcript_id AT2G24320.1  protein_id AT2G24320.1p  transcript_id AT2G24320.1  
At2g24330	chr2:010349279	0.0	C/10349279-10349566,10349063-10349207,10348856-10348965,10347710-10348127,10347340-10347605	AT2G24330.1  CDS  gene_syn T28I24.6, T28I24_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31080.1); Has 233 Blast hits to 229 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 128; Fungi - 48; Plants - 52; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT2G24330.1p  transcript_id AT2G24330.1  protein_id AT2G24330.1p  transcript_id AT2G24330.1  
At2g24340	chr2:010359511	0.0	C/10359511-10359546,10358483-10358608,10356333-10356563,10355944-10356308,10355683-10355837,10355430-10355485	AT2G24340.1  CDS  gene_syn T28I24.7, T28I24_7  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; Has 50 Blast hits to 50 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 2; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G24340.1p  transcript_id AT2G24340.1  protein_id AT2G24340.1p  transcript_id AT2G24340.1  
At2g24350	chr2:010361239	0.0	W/10361239-10361364,10361836-10361936,10362023-10362188,10362275-10362508,10362603-10362684,10362764-10363239,10363335-10363443,10363550-10363605,10363759-10363868,10363978-10364065,10364158-10364223	AT2G24350.1  CDS  gene_syn T28I24.8, T28I24_8  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT3G12640.1); Has 898 Blast hits to 881 proteins in 163 species: Archae - 0; Bacteria - 8; Metazoa - 367; Fungi - 224; Plants - 165; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).  protein_id AT2G24350.1p  transcript_id AT2G24350.1  protein_id AT2G24350.1p  transcript_id AT2G24350.1  
At2g24360	chr2:010365180	0.0	C/10365180-10366075,10364742-10365081	AT2G24360.1  CDS  gene_syn T28I24.9, T28I24_9  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468|16429265|IDA  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function protein tyrosine kinase activity|GO:0004713|16429265|IDA  go_function kinase activity|GO:0016301||ISS  product serine/threonine/tyrosine kinase, putative  note serine/threonine/tyrosine kinase, putative; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, protein tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), ATMRK serine/threonine protein kinase-like (InterPro:IPR015783), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G31170.3); Has 96787 Blast hits to 95023 proteins in 3525 species: Archae - 68; Bacteria - 8423; Metazoa - 42926; Fungi - 8081; Plants - 19355; Viruses - 602; Other Eukaryotes - 17332 (source: NCBI BLink).  protein_id AT2G24360.1p  transcript_id AT2G24360.1  protein_id AT2G24360.1p  transcript_id AT2G24360.1  
At2g24370	chr2:010372850	0.0	C/10372850-10373063,10372667-10372761,10372459-10372580,10372162-10372370,10371974-10372085,10371615-10371900,10371440-10371541,10370943-10371371,10370102-10370860,10369979-10370017	AT2G24370.1  CDS  gene_syn T28I24.10, T28I24_10  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process response to stress|GO:0006950||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note ATP binding / kinase/ protein kinase/ protein serine/threonine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), UspA (InterPro:IPR006016), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G31230.1); Has 83541 Blast hits to 80934 proteins in 3315 species: Archae - 66; Bacteria - 8687; Metazoa - 35721; Fungi - 6274; Plants - 18061; Viruses - 225; Other Eukaryotes - 14507 (source: NCBI BLink).  protein_id AT2G24370.1p  transcript_id AT2G24370.1  protein_id AT2G24370.1p  transcript_id AT2G24370.1  
At2g24380	chr2:010373576	0.0	W/10373576-10373648	AT2G24380.1  tRNA  gene_syn 49199.TRNA-ARG-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: ACG)  transcript_id AT2G24380.1  
At2g24390	chr2:010373796	0.0	W/10373796-10373914,10373994-10374066,10374136-10374228,10374384-10374470,10374568-10374654	AT2G24390.1  CDS  gene_syn T28I24.12, T28I24_12  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Butirosin biosynthesis, BtrG-like (InterPro:IPR013024), AIG2-like (InterPro:IPR009288); BEST Arabidopsis thaliana protein match is: avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related (TAIR:AT4G31310.1); Has 204 Blast hits to 204 proteins in 63 species: Archae - 15; Bacteria - 49; Metazoa - 0; Fungi - 38; Plants - 61; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT2G24390.1p  transcript_id AT2G24390.1  protein_id AT2G24390.1p  transcript_id AT2G24390.1  
At2g24390	chr2:010373796	0.0	W/10373796-10373914,10374000-10374066,10374136-10374228,10374384-10374470,10374568-10374654	AT2G24390.2  CDS  gene_syn T28I24.12, T28I24_12  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Butirosin biosynthesis, BtrG-like (InterPro:IPR013024), AIG2-like (InterPro:IPR009288); BEST Arabidopsis thaliana protein match is: avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related (TAIR:AT4G31310.1); Has 167 Blast hits to 167 proteins in 49 species: Archae - 12; Bacteria - 32; Metazoa - 0; Fungi - 33; Plants - 61; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT2G24390.2p  transcript_id AT2G24390.2  protein_id AT2G24390.2p  transcript_id AT2G24390.2  
At2g24395	chr2:010375497	0.0	W/10375497-10375670,10375751-10375888,10375995-10376081	AT2G24395.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product chaperone protein dnaJ-related  note chaperone protein dnaJ-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 17 Blast hits to 17 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G24395.1p  transcript_id AT2G24395.1  protein_id AT2G24395.1p  transcript_id AT2G24395.1  
At2g24400	chr2:010377993	0.0	C/10377993-10378529	AT2G24400.1  CDS  gene_syn T28I24.13, T28I24_13  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  product auxin-responsive protein, putative / small auxin up RNA (SAUR_D)  note auxin-responsive protein, putative / small auxin up RNA (SAUR_D); FUNCTIONS IN: calmodulin binding; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative / small auxin up RNA (SAUR_C) (TAIR:AT4G31320.1); Has 701 Blast hits to 694 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 700; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G24400.1p  transcript_id AT2G24400.1  protein_id AT2G24400.1p  transcript_id AT2G24400.1  
At2g24410	chr2:010379171	0.0	C/10379171-10379407	AT2G24410.1  CDS  gene_syn T28I24.14, T28I24_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: DDL (DAWDLE) (TAIR:AT3G20550.1); Has 134 Blast hits to 134 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 22; Plants - 11; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT2G24410.1p  transcript_id AT2G24410.1  protein_id AT2G24410.1p  transcript_id AT2G24410.1  
At2g24420	chr2:010380147	0.0	W/10380147-10380315,10380436-10380563,10380649-10380720,10380797-10380910,10381035-10381103,10381193-10381303,10381385-10381447,10381529-10381591,10381667-10381822,10381915-10382070,10382181-10382261,10382349-10382410,10382546-10382624	AT2G24420.1  CDS  gene_syn T28I24.15, T28I24_15  go_component plasma membrane|GO:0005886|17151019|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  product DNA repair ATPase-related  note DNA repair ATPase-related; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT4G31340.1); Has 40459 Blast hits to 22195 proteins in 1227 species: Archae - 603; Bacteria - 4138; Metazoa - 19968; Fungi - 2677; Plants - 1225; Viruses - 186; Other Eukaryotes - 11662 (source: NCBI BLink).  protein_id AT2G24420.1p  transcript_id AT2G24420.1  protein_id AT2G24420.1p  transcript_id AT2G24420.1  
At2g24420	chr2:010380147	0.0	W/10380147-10380315,10380436-10380563,10380649-10380720,10380797-10380910,10381035-10381103,10381193-10381303,10381385-10381447,10381529-10381591,10381667-10381822,10381915-10382070,10382181-10382261,10382349-10382410,10382546-10382624	AT2G24420.2  CDS  gene_syn T28I24.15, T28I24_15  go_component plasma membrane|GO:0005886|17151019|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  product DNA repair ATPase-related  note DNA repair ATPase-related; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT4G31340.1); Has 40459 Blast hits to 22195 proteins in 1227 species: Archae - 603; Bacteria - 4138; Metazoa - 19968; Fungi - 2677; Plants - 1225; Viruses - 186; Other Eukaryotes - 11662 (source: NCBI BLink).  protein_id AT2G24420.2p  transcript_id AT2G24420.2  protein_id AT2G24420.2p  transcript_id AT2G24420.2  
At2g24430	chr2:010386200	0.0	C/10386200-10386386,10384183-10384454,10383517-10384008	AT2G24430.1  CDS  gene_syn ANAC038, ANAC039, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 039, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 38, T28I24.16, T28I24_16  gene ANAC038  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ANAC038 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 38); transcription factor  note ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 38 (ANAC038); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, hypocotyl, root, leaf; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac058 (Arabidopsis NAC domain containing protein 58); transcription factor (TAIR:AT3G18400.1); Has 1623 Blast hits to 1620 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 1613; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G24430.1p  transcript_id AT2G24430.1  protein_id AT2G24430.1p  transcript_id AT2G24430.1  
At2g24430	chr2:010386200	0.0	C/10386200-10386386,10384183-10384454,10383517-10384008	AT2G24430.2  CDS  gene_syn ANAC038, ANAC039, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 039, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 38, T28I24.16, T28I24_16  gene ANAC038  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ANAC038 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 38); transcription factor  note ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 039 (ANAC039); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, hypocotyl, root, leaf; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac058 (Arabidopsis NAC domain containing protein 58); transcription factor (TAIR:AT3G18400.1); Has 1623 Blast hits to 1620 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 1613; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G24430.2p  transcript_id AT2G24430.2  protein_id AT2G24430.2p  transcript_id AT2G24430.2  
At2g24440	chr2:010391124	0.0	W/10391124-10391437,10391722-10391818,10391937-10391996,10392412-10392492	AT2G24440.1  CDS  gene_syn T28I24.17, T28I24_17  go_process cell redox homeostasis|GO:0045454||IEA  go_function selenium binding|GO:0008430||IEA  go_component cellular_component|GO:0005575||ND  product selenium binding  note selenium binding; FUNCTIONS IN: selenium binding; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SelT/selW/selH selenoprotein (InterPro:IPR011893); BEST Arabidopsis thaliana protein match is: selenium binding (TAIR:AT4G31360.1); Has 1507 Blast hits to 989 proteins in 129 species: Archae - 2; Bacteria - 25; Metazoa - 685; Fungi - 98; Plants - 69; Viruses - 1; Other Eukaryotes - 627 (source: NCBI BLink).  protein_id AT2G24440.1p  transcript_id AT2G24440.1  protein_id AT2G24440.1p  transcript_id AT2G24440.1  
At2g24450	chr2:010393019	0.0	C/10393019-10393861	AT2G24450.1  CDS  gene_syn FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 3 PRECURSOR, FLA3, T28I24.18, T28I24_18  gene FLA3  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function molecular_function|GO:0003674||ND  product FLA3 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 3 PRECURSOR)  note FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 3 PRECURSOR (FLA3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: anchored to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FLA5 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 5 PRECURSOR) (TAIR:AT4G31370.1); Has 9817 Blast hits to 5811 proteins in 595 species: Archae - 8; Bacteria - 2143; Metazoa - 2049; Fungi - 1046; Plants - 2431; Viruses - 617; Other Eukaryotes - 1523 (source: NCBI BLink).  protein_id AT2G24450.1p  transcript_id AT2G24450.1  protein_id AT2G24450.1p  transcript_id AT2G24450.1  
At2g24460	chr2:010394511	0.0	W/10394511-10394963	AT2G24460.1  CDS  gene_syn T28I24.19, T28I24_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: pollen tube; BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G24480.1); Has 12 Blast hits to 12 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G24460.1p  transcript_id AT2G24460.1  protein_id AT2G24460.1p  transcript_id AT2G24460.1  
At2g24470	chr2:010396580	0.0	C/10396580-10396622,10395828-10396063	AT2G24470.1  CDS  gene_syn T28I24.20, T28I24_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869, plant (InterPro:IPR008587); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G36120.1); Has 30 Blast hits to 30 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G24470.1p  transcript_id AT2G24470.1  protein_id AT2G24470.1p  transcript_id AT2G24470.1  
At2g24480	chr2:010397588	0.0	W/10397588-10398184	AT2G24480.1  CDS  gene_syn T28I24.21, T28I24_21  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G28620.1); Has 4145 Blast hits to 4138 proteins in 193 species: Archae - 0; Bacteria - 2; Metazoa - 1320; Fungi - 264; Plants - 1978; Viruses - 28; Other Eukaryotes - 553 (source: NCBI BLink).  protein_id AT2G24480.1p  transcript_id AT2G24480.1  protein_id AT2G24480.1p  transcript_id AT2G24480.1  
At2g24490	chr2:010400312	0.0	C/10400312-10400416,10400058-10400168,10399862-10399962,10399715-10399756,10399549-10399626,10399348-10399426,10399172-10399258,10398988-10399073,10398841-10398909,10398651-10398732	AT2G24490.1  CDS  gene_syn ATRPA2, REPLICON PROTEIN A2, ROR1, RPA2, SUPPRESSOR OF ROS1, T28I24.22, T28I24_22  gene RPA2  function Encodes a component of Replication Protein A. Component of transcriptional gene silencing which does not affect endogenous small RNA accumulation nor DNA methylation. Localized in the nucleus. Involved in DNA repair. Interacts physically with ROS1.  go_component nucleus|GO:0005634|16271867|IDA  go_process DNA replication|GO:0006260|16271867|IGI  go_process DNA replication|GO:0006260||ISS  go_process DNA repair|GO:0006281|16271867|IMP  go_process DNA repair|GO:0006281|16271868|IMP  go_process gene silencing|GO:0016458|16271867|IMP  go_process gene silencing|GO:0016458|16271868|IMP  go_function protein binding|GO:0005515|16271867|IPI  product RPA2 (REPLICON PROTEIN A2); protein binding  note REPLICON PROTEIN A2 (RPA2); FUNCTIONS IN: protein binding; INVOLVED IN: DNA repair, gene silencing, DNA replication; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Replication protein A, subunit RPA32 (InterPro:IPR014646), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Replication protein A, C-terminal (InterPro:IPR014892), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365); BEST Arabidopsis thaliana protein match is: replication protein-related (TAIR:AT3G02920.1); Has 329 Blast hits to 325 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 86; Plants - 60; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT2G24490.1p  transcript_id AT2G24490.1  protein_id AT2G24490.1p  transcript_id AT2G24490.1  
At2g24490	chr2:010400312	0.0	C/10400312-10400416,10400058-10400168,10399862-10399962,10399715-10399756,10399549-10399626,10399348-10399426,10399172-10399258,10398988-10399073,10398841-10398909,10398651-10398732	AT2G24490.2  CDS  gene_syn ATRPA2, REPLICON PROTEIN A2, ROR1, RPA2, SUPPRESSOR OF ROS1, T28I24.22, T28I24_22  gene RPA2  function Encodes a component of Replication Protein A. Component of transcriptional gene silencing which does not affect endogenous small RNA accumulation nor DNA methylation. Localized in the nucleus. Involved in DNA repair. Interacts physically with ROS1.  go_component nucleus|GO:0005634|16271867|IDA  go_process DNA replication|GO:0006260|16271867|IGI  go_process DNA replication|GO:0006260||ISS  go_process DNA repair|GO:0006281|16271867|IMP  go_process DNA repair|GO:0006281|16271868|IMP  go_process gene silencing|GO:0016458|16271867|IMP  go_process gene silencing|GO:0016458|16271868|IMP  go_function protein binding|GO:0005515|16271867|IPI  product RPA2 (REPLICON PROTEIN A2); protein binding  note REPLICON PROTEIN A2 (RPA2); FUNCTIONS IN: protein binding; INVOLVED IN: DNA repair, gene silencing, DNA replication; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Replication protein A, subunit RPA32 (InterPro:IPR014646), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Replication protein A, C-terminal (InterPro:IPR014892), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365); BEST Arabidopsis thaliana protein match is: replication protein-related (TAIR:AT3G02920.1); Has 329 Blast hits to 325 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 86; Plants - 60; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT2G24490.2p  transcript_id AT2G24490.2  protein_id AT2G24490.2p  transcript_id AT2G24490.2  
At2g24500	chr2:010402701	0.0	C/10402701-10402805,10402043-10402588,10401796-10401965,10401499-10401708,10401259-10401415	AT2G24500.1  CDS  gene_syn C2H2 ZINC FINGER PROTEIN FZF, FZF, T28I24.23, T28I24_23  gene FZF  function Encodes a C2H2 zinc finger protein FZF.  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product FZF; transcription factor  note FZF; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT4G31420.1); Has 660 Blast hits to 647 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 320; Fungi - 183; Plants - 41; Viruses - 2; Other Eukaryotes - 114 (source: NCBI BLink).  protein_id AT2G24500.1p  transcript_id AT2G24500.1  protein_id AT2G24500.1p  transcript_id AT2G24500.1  
At2g24510	chr2:010404373	0.0	W/10404373-10404456,10404696-10405457	AT2G24510.1  CDS  gene_syn T28I24.24, T28I24_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G17540.1); Has 456 Blast hits to 438 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 456; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G24510.1p  transcript_id AT2G24510.1  protein_id AT2G24510.1p  transcript_id AT2G24510.1  
At2g24513	chr2:010408887	0.0	W/10408887-10409015	AT2G24513.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G24513.1p  transcript_id AT2G24513.1  protein_id AT2G24513.1p  transcript_id AT2G24513.1  
At2g24520	chr2:010415522	0.0	W/10415522-10415629,10415715-10415951,10416257-10417141,10417222-10417326,10417407-10417551,10417630-10417794,10417889-10418127,10418210-10418242,10418332-10418413,10418493-10418653,10418725-10418898,10418983-10419165,10419253-10419434,10419634-10419730	AT2G24520.1  CDS  gene_syn AHA5, Arabidopsis H(+)-ATPase 5, F25P17.18, F25P17_18  gene AHA5  go_component plasma membrane|GO:0005886|17317660|IDA  go_process ATP biosynthetic process|GO:0006754||IEA  go_process cation transport|GO:0006812||IEA  go_process metabolic process|GO:0008152||IEA  go_function ATPase activity|GO:0016887||ISS  product AHA5 (Arabidopsis H(+)-ATPase 5); ATPase  note Arabidopsis H(+)-ATPase 5 (AHA5); FUNCTIONS IN: ATPase activity; INVOLVED IN: cation transport, metabolic process, ATP biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type, plasma-membrane proton-efflux (InterPro:IPR006534), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: AHA1 (ARABIDOPSIS H+ ATPASE 1); ATPase/ hydrogen-exporting ATPase, phosphorylative mechanism / protein binding (TAIR:AT2G18960.1); Has 20978 Blast hits to 18423 proteins in 1820 species: Archae - 405; Bacteria - 11682; Metazoa - 3291; Fungi - 1604; Plants - 1083; Viruses - 3; Other Eukaryotes - 2910 (source: NCBI BLink).  protein_id AT2G24520.1p  transcript_id AT2G24520.1  protein_id AT2G24520.1p  transcript_id AT2G24520.1  
At2g24530	chr2:010422597	0.0	W/10422597-10423820	AT2G24530.1  CDS  gene_syn F25P17.17, F25P17_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31440.1); Has 77 Blast hits to 68 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G24530.1p  transcript_id AT2G24530.1  protein_id AT2G24530.1p  transcript_id AT2G24530.1  
At2g24545	chr2:010425818	0.0	C/10425818-10427263	AT2G24545.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G24540  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G24545.1  
At2g24545	chr2:010426166	0.0	C/10426166-10427513	AT2G24545.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G24540  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G24545.2  
At2g24540	chr2:010426414	0.0	W/10426414-10427532	AT2G24540.1  CDS  gene_syn AFR, ATTENUATED FAR-RED RESPONSE, F25P17.16, F25P17_16  gene AFR  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product AFR (ATTENUATED FAR-RED RESPONSE)  note ATTENUATED FAR-RED RESPONSE (AFR); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT1G30090.1); Has 4452 Blast hits to 3204 proteins in 144 species: Archae - 6; Bacteria - 255; Metazoa - 3430; Fungi - 26; Plants - 576; Viruses - 14; Other Eukaryotes - 145 (source: NCBI BLink).  protein_id AT2G24540.1p  transcript_id AT2G24540.1  protein_id AT2G24540.1p  transcript_id AT2G24540.1  
At2g24550	chr2:010428729	0.0	C/10428729-10429051,10428060-10428474	AT2G24550.1  CDS  gene_syn F25P17.15, F25P17_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31510.1); Has 115 Blast hits to 115 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 2; Plants - 108; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G24550.1p  transcript_id AT2G24550.1  protein_id AT2G24550.1p  transcript_id AT2G24550.1  
At2g24560	chr2:010431537	0.0	W/10431537-10432163,10432370-10432628,10432728-10432933	AT2G24560.1  CDS  gene_syn F25P17.14, F25P17_14  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product carboxylesterase/ hydrolase, acting on ester bonds  note carboxylesterase/ hydrolase, acting on ester bonds; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: RXF26; carboxylesterase/ hydrolase, acting on ester bonds (TAIR:AT1G58430.1); Has 1782 Blast hits to 1768 proteins in 146 species: Archae - 0; Bacteria - 200; Metazoa - 1; Fungi - 6; Plants - 1554; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT2G24560.1p  transcript_id AT2G24560.1  protein_id AT2G24560.1p  transcript_id AT2G24560.1  
At2g24570	chr2:010438564	0.0	C/10438564-10439222,10437944-10438072,10437676-10437853	AT2G24570.1  CDS  gene_syn ATWRKY17, F25P17.13, F25P17_13, WRKY DNA-BINDING PROTEIN 17, WRKY17  gene WRKY17  function member of WRKY Transcription Factor; Group II-d; negative regulator of basal resistance to Pseudomonas syringae.  go_component nucleus|GO:0005634|10785665|IC  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_process response to chitin|GO:0010200|17722694|IEP  go_process defense response to bacterium|GO:0042742|17114354|IEP  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function calmodulin binding|GO:0005516|15733871|IDA  product WRKY17; calmodulin binding / transcription factor  note WRKY17; FUNCTIONS IN: transcription factor activity, calmodulin binding; INVOLVED IN: defense response to bacterium, response to chitin, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY, Zn-cluster (InterPro:IPR018872); BEST Arabidopsis thaliana protein match is: WRKY11; calmodulin binding / transcription factor (TAIR:AT4G31550.1); Has 1973 Blast hits to 1681 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1952; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT2G24570.1p  transcript_id AT2G24570.1  protein_id AT2G24570.1p  transcript_id AT2G24570.1  
At2g24580	chr2:010444928	0.0	C/10444928-10446178	AT2G24580.1  CDS  gene_syn F25P17.12, F25P17_12  go_process tetrahydrofolate metabolic process|GO:0046653||IEA  go_component cellular_component|GO:0005575||ND  go_function sarcosine oxidase activity|GO:0008115|14766747|IDA  go_function sarcosine oxidase activity|GO:0008115||ISS  product sarcosine oxidase family protein  note sarcosine oxidase family protein; FUNCTIONS IN: sarcosine oxidase activity; INVOLVED IN: tetrahydrofolate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD dependent oxidoreductase (InterPro:IPR006076), Sarcosine oxidase, monomeric (InterPro:IPR006281); Has 2790 Blast hits to 2769 proteins in 593 species: Archae - 61; Bacteria - 1633; Metazoa - 149; Fungi - 145; Plants - 43; Viruses - 0; Other Eukaryotes - 759 (source: NCBI BLink).  protein_id AT2G24580.1p  transcript_id AT2G24580.1  protein_id AT2G24580.1p  transcript_id AT2G24580.1  
At2g24590	chr2:010449837	0.0	W/10449837-10449925,10450015-10450103,10450199-10450448,10450541-10450666,10450824-10450860	AT2G24590.1  CDS  gene_syn F25P17.11, F25P17_11  go_component nucleolus|GO:0005730|15496452|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process RNA splicing|GO:0008380|16807317|NAS  product splicing factor, putative  note splicing factor, putative; FUNCTIONS IN: zinc ion binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA splicing; LOCATED IN: nucleolus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: SRZ-22; protein binding (TAIR:AT4G31580.2); Has 9855 Blast hits to 8604 proteins in 578 species: Archae - 6; Bacteria - 593; Metazoa - 5438; Fungi - 1074; Plants - 1815; Viruses - 79; Other Eukaryotes - 850 (source: NCBI BLink).  protein_id AT2G24590.1p  transcript_id AT2G24590.1  protein_id AT2G24590.1p  transcript_id AT2G24590.1  
At2g24592	chr2:010451419	0.0	W/10451419-10451511	AT2G24592.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G24592.1p  transcript_id AT2G24592.1  protein_id AT2G24592.1p  transcript_id AT2G24592.1  
At2g24600	chr2:010453979	0.0	C/10453979-10454414,10453463-10453902,10452430-10453359	AT2G24600.3  CDS  gene_syn F25P17.10, F25P17_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT1G10340.1); Has 19378 Blast hits to 9653 proteins in 395 species: Archae - 20; Bacteria - 1127; Metazoa - 11375; Fungi - 1040; Plants - 1601; Viruses - 129; Other Eukaryotes - 4086 (source: NCBI BLink).  protein_id AT2G24600.3p  transcript_id AT2G24600.3  protein_id AT2G24600.3p  transcript_id AT2G24600.3  
At2g24600	chr2:010453979	0.0	C/10453979-10454414,10453463-10453902,10452909-10453359,10452430-10452749	AT2G24600.1  CDS  gene_syn F25P17.10, F25P17_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT1G10340.1); Has 19041 Blast hits to 9504 proteins in 396 species: Archae - 22; Bacteria - 1127; Metazoa - 11372; Fungi - 1040; Plants - 1265; Viruses - 126; Other Eukaryotes - 4089 (source: NCBI BLink).  protein_id AT2G24600.1p  transcript_id AT2G24600.1  protein_id AT2G24600.1p  transcript_id AT2G24600.1  
At2g24600	chr2:010453979	0.0	C/10453979-10454414,10453463-10453902,10452909-10453359,10452430-10452749	AT2G24600.2  CDS  gene_syn F25P17.10, F25P17_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT1G10340.1); Has 19041 Blast hits to 9504 proteins in 396 species: Archae - 22; Bacteria - 1127; Metazoa - 11372; Fungi - 1040; Plants - 1265; Viruses - 126; Other Eukaryotes - 4089 (source: NCBI BLink).  protein_id AT2G24600.2p  transcript_id AT2G24600.2  protein_id AT2G24600.2p  transcript_id AT2G24600.2  
At2g24610	chr2:010457105	0.0	W/10457105-10457133,10457344-10457884,10458069-10458281,10458697-10458998,10459072-10459183,10459276-10459512,10459605-10460351	AT2G24610.1  CDS  gene_syn ATCNGC14, CNGC14, CYCLIC NUCLEOTIDE-GATED CHANNEL 14, F25P17.9, F25P17_9  gene ATCNGC14  function member of Cyclic nucleotide gated channel family  go_component membrane|GO:0016020||IEA  go_process ion transport|GO:0006811||IEA  go_process potassium ion transport|GO:0006813||IEA  go_function ion channel activity|GO:0005216||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function cyclic nucleotide binding|GO:0030551||ISS  product ATCNGC14; calmodulin binding / cyclic nucleotide binding / ion channel  note ATCNGC14; FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: potassium ion transport, ion transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding, conserved site (InterPro:IPR018488), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: ATCNGC17; calmodulin binding / cyclic nucleotide binding / ion channel (TAIR:AT4G30360.1); Has 2604 Blast hits to 2470 proteins in 221 species: Archae - 0; Bacteria - 66; Metazoa - 1348; Fungi - 16; Plants - 609; Viruses - 0; Other Eukaryotes - 565 (source: NCBI BLink).  protein_id AT2G24610.1p  transcript_id AT2G24610.1  protein_id AT2G24610.1p  transcript_id AT2G24610.1  
At2g24615	chr2:010461199	0.0	W/10461199-10461265,10462631-10462818	AT2G24615.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24625.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G24615.1p  transcript_id AT2G24615.1  protein_id AT2G24615.1p  transcript_id AT2G24615.1  
At2g24617	chr2:010462910	0.0	W/10462910-10463224	AT2G24617.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G24617.1p  transcript_id AT2G24617.1  protein_id AT2G24617.1p  transcript_id AT2G24617.1  
At2g24620	chr2:010463076	0.0	C/10463076-10463549	AT2G24620.1  CDS  gene_syn F25P17.8, F25P17_8  go_process recognition of pollen|GO:0048544||IEA  go_component cellular_component|GO:0005575||ND  product S-locus glycoprotein family protein  note S-locus glycoprotein family protein; INVOLVED IN: recognition of pollen; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: ARK1 (A. THALIANA RECEPTOR KINASE 1); kinase/ protein kinase/ protein serine/threonine kinase/ transmembrane receptor protein kinase (TAIR:AT1G65790.1); Has 986 Blast hits to 965 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 986; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G24620.1p  transcript_id AT2G24620.1  protein_id AT2G24620.1p  transcript_id AT2G24620.1  
At2g24625	chr2:010468340	0.0	W/10468340-10468394,10469075-10469286	AT2G24625.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24615.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G24625.1p  transcript_id AT2G24625.1  protein_id AT2G24625.1p  transcript_id AT2G24625.1  
At2g24630	chr2:010473265	0.0	C/10473265-10473984,10472860-10473168,10472464-10472754,10472271-10472384,10471558-10472196	AT2G24630.1  CDS  gene_syn ATCSLC08, ATCSLC8, CELLULOSE-SYNTHASE LIKE C8, CSLC08, F25P17.7, F25P17_7  gene ATCSLC08  function encodes a gene similar to cellulose synthase  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  product ATCSLC08; cellulose synthase/ transferase, transferring glycosyl groups  note ATCSLC08; FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: ATCSLC5 (CELLULOSE-SYNTHASE LIKE C5); cellulose synthase/ transferase, transferring glycosyl groups (TAIR:AT4G31590.1); Has 3151 Blast hits to 3150 proteins in 848 species: Archae - 105; Bacteria - 2300; Metazoa - 31; Fungi - 71; Plants - 314; Viruses - 14; Other Eukaryotes - 316 (source: NCBI BLink).  protein_id AT2G24630.1p  transcript_id AT2G24630.1  protein_id AT2G24630.1p  transcript_id AT2G24630.1  
At2g24640	chr2:010479091	0.0	C/10479091-10479341,10478534-10478738,10478354-10478442,10478175-10478260,10477917-10478079,10477706-10477829,10476988-10477145,10476817-10476901,10476504-10476716,10476317-10476378,10475613-10476195	AT2G24640.1  CDS  gene_syn F25P17.6, F25P17_6, UBIQUITIN-SPECIFIC PROTEASE 19, UBP19  gene UBP19  go_component endomembrane system|GO:0012505||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_function cysteine-type endopeptidase activity|GO:0004197||ISS  go_function ubiquitin thiolesterase activity|GO:0004221||ISS  product UBP19 (UBIQUITIN-SPECIFIC PROTEASE 19); cysteine-type endopeptidase/ ubiquitin thiolesterase  note UBIQUITIN-SPECIFIC PROTEASE 19 (UBP19); FUNCTIONS IN: cysteine-type endopeptidase activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: UBP18 (UBIQUITIN-SPECIFIC PROTEASE 18); cysteine-type endopeptidase/ ubiquitin thiolesterase (TAIR:AT4G31670.1); Has 8209 Blast hits to 6904 proteins in 285 species: Archae - 6; Bacteria - 230; Metazoa - 4346; Fungi - 1201; Plants - 612; Viruses - 13; Other Eukaryotes - 1801 (source: NCBI BLink).  protein_id AT2G24640.1p  transcript_id AT2G24640.1  protein_id AT2G24640.1p  transcript_id AT2G24640.1  
At2g24650	chr2:010482597	0.0	C/10482597-10482650,10482213-10482492,10481996-10482096,10481608-10481925,10481072-10481524,10480728-10480994	AT2G24650.2  CDS  gene_syn F25P17.5, F25P17_5  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product DNA binding / transcription factor  note DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: MEE45 (maternal effect embryo arrest 45); DNA binding / transcription factor (TAIR:AT4G00260.1).  protein_id AT2G24650.2p  transcript_id AT2G24650.2  protein_id AT2G24650.2p  transcript_id AT2G24650.2  
At2g24650	chr2:010487506	0.0	C/10487506-10487571,10487181-10487427,10486833-10486960,10486165-10486608,10485575-10486081,10485027-10485533,10484565-10484936,10484366-10484464,10483845-10484219,10483538-10483762,10482213-10482492,10481996-10482096,10481608-10481925,10481072-10481524,10480728-10480994	AT2G24650.1  CDS  gene_syn F25P17.5, F25P17_5  go_component apoplast|GO:0048046|18538804|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product DNA binding / transcription factor  note DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: apoplast; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: MEE45 (maternal effect embryo arrest 45); DNA binding / transcription factor (TAIR:AT4G00260.1); Has 527 Blast hits to 125 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 525; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G24650.1p  transcript_id AT2G24650.1  protein_id AT2G24650.1p  transcript_id AT2G24650.1  
At2g24660	chr2:010488140	0.0	C/10488140-10492243	AT2G24660.1  mRNA_TE_gene  pseudo  gene_syn F25P17.4, F25P17_4  note Transposable element gene, copia-like retrotransposon family, has a 1.7e-166 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element)  
At2g24670	chr2:010492812	0.0	W/10492812-10493567	AT2G24670.1  CDS  gene_syn F25P17.3, F25P17_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT2G31720.1); Has 61 Blast hits to 61 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G24670.1p  transcript_id AT2G24670.1  protein_id AT2G24670.1p  transcript_id AT2G24670.1  
At2g24680	chr2:010497930	0.0	C/10497930-10498331,10497614-10497835,10496643-10496787,10496154-10496275,10495860-10495929,10495761-10495795,10495313-10495723,10494792-10495223,10494255-10494698,10493887-10494159	AT2G24680.1  CDS  gene_syn F25P17.2, F25P17_2  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcriptional factor B3 family protein  note transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT2G24650.1); Has 265 Blast hits to 68 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 265; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G24680.1p  transcript_id AT2G24680.1  protein_id AT2G24680.1p  transcript_id AT2G24680.1  
At2g24683	chr2:010498727	0.0	W/10498727-10498861	AT2G24683.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G24683.1p  transcript_id AT2G24683.1  protein_id AT2G24683.1p  transcript_id AT2G24683.1  
At2g24690	chr2:010503023	0.0	C/10503023-10503110,10502690-10502787,10502450-10502599,10501903-10502367,10501243-10501813,10500863-10500981,10500425-10500637,10500216-10500342,10499875-10500050,10499551-10499790	AT2G24690.1  CDS  gene_syn F25P17.1, F25P17_1  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product DNA binding / transcription factor  note DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT2G24650.1); Has 277 Blast hits to 83 proteins in 13 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 7; Plants - 264; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G24690.1p  transcript_id AT2G24690.1  protein_id AT2G24690.1p  transcript_id AT2G24690.1  
At2g24692	chr2:010503765	0.0	W/10503765-10503974	AT2G24692.1  CDS  product unknown protein  note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50780.1); Has 31 Blast hits to 31 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G24692.1p  transcript_id AT2G24692.1  protein_id AT2G24692.1p  transcript_id AT2G24692.1  
At2g24693	chr2:010506319	0.0	W/10506319-10506397,10506608-10506750	AT2G24693.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Expressed protein  note Expressed protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; Has 9 Blast hits to 9 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G24693.1p  transcript_id AT2G24693.1  protein_id AT2G24693.1p  transcript_id AT2G24693.1  
At2g24696	chr2:010510830	0.0	C/10510830-10510902,10510386-10510510,10510105-10510278,10509946-10510011,10509419-10509856,10509068-10509319	AT2G24696.1  CDS  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT2G24680.1).  protein_id AT2G24696.1p  transcript_id AT2G24696.1  protein_id AT2G24696.1p  transcript_id AT2G24696.1  
At2g24700	chr2:010515211	0.0	C/10515211-10515288,10514856-10515135,10514644-10514780,10514282-10514549,10514105-10514214,10513752-10514016,10513381-10513667,10513049-10513291	AT2G24700.1  CDS  gene_syn F27A10.1, F27A10_1  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcriptional factor B3 family protein  note transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT2G24650.2); Has 246 Blast hits to 108 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 246; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G24700.1p  transcript_id AT2G24700.1  protein_id AT2G24700.1p  transcript_id AT2G24700.1  
At2g24710	chr2:010520291	0.0	C/10520291-10520549,10518234-10519558,10517837-10518149,10517335-10517741,10516880-10517263	AT2G24710.1  CDS  gene_syn ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.3, ATGLR2.3, F27A10.2, F27A10_2, GLR2.3, GLUTAMATE RECEPTOR 2.3  gene ATGLR2.3  function member of Putative ligand-gated ion channel subunit family  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process cellular calcium ion homeostasis|GO:0006874|11379626|NAS  go_process response to light stimulus|GO:0009416|11379626|NAS  go_function intracellular ligand-gated ion channel activity|GO:0005217||ISS  product ATGLR2.3; intracellular ligand-gated ion channel  note ATGLR2.3; FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: ATGLR2.2; intracellular ligand-gated ion channel (TAIR:AT2G24720.1); Has 3989 Blast hits to 3913 proteins in 449 species: Archae - 35; Bacteria - 754; Metazoa - 2748; Fungi - 0; Plants - 314; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).  protein_id AT2G24710.1p  transcript_id AT2G24710.1  protein_id AT2G24710.1p  transcript_id AT2G24710.1  
At2g24720	chr2:010525579	0.0	C/10525579-10525840,10524138-10525459,10523736-10524048,10522783-10523648	AT2G24720.1  CDS  gene_syn ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.2, ATGLR2.2, F27A10.3, F27A10_3, GLR2.2, GLUTAMATE RECEPTOR 2.2  gene ATGLR2.2  function member of Putative ligand-gated ion channel subunit family  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process cellular calcium ion homeostasis|GO:0006874|11379626|NAS  go_process response to light stimulus|GO:0009416|11379626|NAS  go_function intracellular ligand-gated ion channel activity|GO:0005217||ISS  product ATGLR2.2; intracellular ligand-gated ion channel  note ATGLR2.2; FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: ATGLR2.3; intracellular ligand-gated ion channel (TAIR:AT2G24710.1); Has 4375 Blast hits to 4264 proteins in 468 species: Archae - 50; Bacteria - 833; Metazoa - 2944; Fungi - 0; Plants - 318; Viruses - 0; Other Eukaryotes - 230 (source: NCBI BLink).  protein_id AT2G24720.1p  transcript_id AT2G24720.1  protein_id AT2G24720.1p  transcript_id AT2G24720.1  
At2g24730	chr2:010526349	0.0	C/10526349-10527025	AT2G24730.1  pseudogenic_transcript  pseudo  gene_syn F27A10.4  note 60S ribosomal protein L4/L1 (RPL4C), pseudogene, blastp match of 68% identity and 7.9e-28 P-value to SP|Q9XF97|RL4_PRUAR 60S ribosomal protein L4 (L1). (Apricot) {Prunus armeniaca}  
At2g24735	chr2:010528064	0.0	W/10528064-10533887	AT2G24735.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G24735.1  
At2g24740	chr2:010529690	0.0	C/10529690-10531957	AT2G24740.1  CDS  gene_syn F27A10.5, F27A10_5, SDG21, SET DOMAIN GROUP 21, SU(VAR)3-9 HOMOLOG 8, SUVH8  gene SDG21  function Encodes a SU(VAR)3-9 homolog, a SET domain protein (Homology Subgroup V; Orthology Group 1). Known SET domain proteins are involved in epigenetic control of gene expression. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. This protein is a putative histone methyltransferase (predicted to methylate H3K9/20) related to the the Drosophila Su(var)3-9 and mammalian G9a proteins.  go_component nucleus|GO:0005634||IEA  go_process regulation of gene expression, epigenetic|GO:0040029||TAS  go_function histone methyltransferase activity|GO:0042054||ISS  product SDG21 (SET DOMAIN GROUP 21); histone methyltransferase  note SET DOMAIN GROUP 21 (SDG21); FUNCTIONS IN: histone methyltransferase activity; INVOLVED IN: regulation of gene expression, epigenetic; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), AT hook, DNA-binding, conserved site (InterPro:IPR017956), SRA-YDG (InterPro:IPR003105), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Pre-SET zinc-binding region (InterPro:IPR007728), Post-SET zinc-binding region (InterPro:IPR003616); BEST Arabidopsis thaliana protein match is: SUVH7 (SU(VAR)3-9 HOMOLOG 7); DNA binding / histone-lysine N-methyltransferase/ zinc ion binding (TAIR:AT1G17770.1); Has 3123 Blast hits to 2972 proteins in 302 species: Archae - 0; Bacteria - 213; Metazoa - 1826; Fungi - 299; Plants - 526; Viruses - 4; Other Eukaryotes - 255 (source: NCBI BLink).  protein_id AT2G24740.1p  transcript_id AT2G24740.1  protein_id AT2G24740.1p  transcript_id AT2G24740.1  
At2g24748	chr2:010536845	0.0	W/10536845-10537829	AT2G24748.1  pseudogenic_transcript  pseudo  function pseudogene of transcriptional factor B3 family protein  
At2g24750	chr2:010539001	0.0	W/10539001-10545985	AT2G24750.1  pseudogenic_transcript  pseudo  gene_syn F27A10.6  note pseudogene, similar to Avr9/Cf-9 rapidly elicited protein 141, similar to GB:AAB61068; blastp match of 43% identity and 5.0e-152 P-value to GP|30013669|gb|AAP03877.1||AY220478 Avr9/Cf-9 rapidly elicited protein 141 {Nicotiana tabacum}  
At2g24755	chr2:010541738	0.0	C/10541738-10549434	AT2G24755.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G24750 and AT2G24760  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G24755.2  
At2g24755	chr2:010544846	0.0	C/10544846-10549434	AT2G24755.3  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G24750 and AT2G24760  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G24755.3  
At2g24760	chr2:010547026	0.0	W/10547026-10549520	AT2G24760.1  mRNA_TE_gene  pseudo  gene_syn F27A10.7  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 4.9e-16 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At2g24755	chr2:010547283	0.0	C/10547283-10549434	AT2G24755.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G24750 and AT2G24760  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G24755.1  
At2g24761	chr2:010549774	0.0	W/10549774-10550230	AT2G24761.1  pseudogenic_transcript  pseudo  function pseudogene of self-incompatibility protein-related protein  
At2g24762	chr2:010559479	0.0	W/10559479-10559949	AT2G24762.1  CDS  gene_syn Arabidopsis thaliana GLUTAMINE DUMPER 4, AtGDU4  gene AtGDU4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product AtGDU4 (Arabidopsis thaliana GLUTAMINE DUMPER 4)  note Arabidopsis thaliana GLUTAMINE DUMPER 4 (AtGDU4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: GDU1 (GLUTAMINE DUMPER 1) (TAIR:AT4G31730.1); Has 64 Blast hits to 64 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G24762.1p  transcript_id AT2G24762.1  protein_id AT2G24762.1p  transcript_id AT2G24762.1  
At2g24765	chr2:010562822	0.0	W/10562822-10562924,10563043-10563081,10563175-10563237,10563814-10563832,10563971-10564082,10564458-10564505,10564682-10564812,10564928-10564961	AT2G24765.1  CDS  gene_syn ADP-RIBOSYLATION FACTOR 3, ARF-LIKE 1, ARF3, ARL1, ATARL1, F27A10.8  gene ARF3  function GTPase required for Golgi targeting of GRIP domain proteins. AtARL1 binds directly to the GRIP domain of AtGRIP in a GTP-dependent manner  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component Golgi stack|GO:0005795|16236155|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function protein binding|GO:0005515|16236155|IPI  product ARF3 (ADP-RIBOSYLATION FACTOR 3); protein binding  note ADP-RIBOSYLATION FACTOR 3 (ARF3); FUNCTIONS IN: protein binding; INVOLVED IN: response to cadmium ion, N-terminal protein myristoylation; LOCATED IN: Golgi stack, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), GTP-binding protein SAR1 (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ATARFA1B (ADP-ribosylation factor A1B); GTP binding / phospholipase activator/ protein binding (TAIR:AT5G14670.1); Has 9120 Blast hits to 9115 proteins in 346 species: Archae - 9; Bacteria - 8; Metazoa - 4888; Fungi - 1160; Plants - 983; Viruses - 3; Other Eukaryotes - 2069 (source: NCBI BLink).  protein_id AT2G24765.1p  transcript_id AT2G24765.1  protein_id AT2G24765.1p  transcript_id AT2G24765.1  
At2g24765	chr2:010562822	0.0	W/10562822-10562924,10563043-10563081,10563175-10563237,10563814-10563832,10563971-10564082,10564458-10564505,10564719-10564742	AT2G24765.2  CDS  gene_syn ADP-RIBOSYLATION FACTOR 3, ARF-LIKE 1, ARF3, ARL1, ATARL1, F27A10.8  gene ARF3  function GTPase required for Golgi targeting of GRIP domain proteins. AtARL1 binds directly to the GRIP domain of AtGRIP in a GTP-dependent manner  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component Golgi stack|GO:0005795|16236155|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function protein binding|GO:0005515|16236155|IPI  product ARF3 (ADP-RIBOSYLATION FACTOR 3); protein binding  note ADP-RIBOSYLATION FACTOR 3 (ARF3); FUNCTIONS IN: protein binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: Golgi stack, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ATARFA1B (ADP-ribosylation factor A1B); GTP binding / phospholipase activator/ protein binding (TAIR:AT5G14670.1); Has 7072 Blast hits to 7071 proteins in 310 species: Archae - 2; Bacteria - 4; Metazoa - 3813; Fungi - 1022; Plants - 912; Viruses - 3; Other Eukaryotes - 1316 (source: NCBI BLink).  protein_id AT2G24765.2p  transcript_id AT2G24765.2  protein_id AT2G24765.2p  transcript_id AT2G24765.2  
At2g24780	chr2:010565681	0.0	C/10565681-10565839	AT2G24780.1  CDS  gene_syn F27A10.9, F27A10_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G24780.1p  transcript_id AT2G24780.1  protein_id AT2G24780.1p  transcript_id AT2G24780.1  
At2g24790	chr2:010566959	0.0	W/10566959-10567537,10567641-10567946	AT2G24790.1  CDS  gene_syn COL3, CONSTANS-LIKE 3, F27A10.10  gene COL3  function Positive regulator of photomorphogenesis that acts downstream of COP1 but can promote lateral root development independently of COP1 and also function as a daylength-sensitive regulator of shoot branching.  go_component nucleus|GO:0005634|16339850|IDA  go_process regulation of photomorphogenesis|GO:0010099|16339850|IMP  go_process red light signaling pathway|GO:0010161|16339850|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein binding|GO:0005515|16339850|IPI  go_function zinc ion binding|GO:0008270||ISS  product COL3 (CONSTANS-LIKE 3); protein binding / transcription factor/ zinc ion binding  note CONSTANS-LIKE 3 (COL3); FUNCTIONS IN: protein binding, transcription factor activity, zinc ion binding; INVOLVED IN: red light signaling pathway, regulation of photomorphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: zinc finger (B-box type) family protein (TAIR:AT5G24930.1); Has 1973 Blast hits to 1426 proteins in 96 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 1819; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).  protein_id AT2G24790.1p  transcript_id AT2G24790.1  protein_id AT2G24790.1p  transcript_id AT2G24790.1  
At2g24790	chr2:010566959	0.0	W/10566959-10567621	AT2G24790.2  CDS  gene_syn COL3, CONSTANS-LIKE 3, F27A10.10  gene COL3  function Positive regulator of photomorphogenesis that acts downstream of COP1 but can promote lateral root development independently of COP1 and also function as a daylength-sensitive regulator of shoot branching.  go_component nucleus|GO:0005634|16339850|IDA  go_process regulation of photomorphogenesis|GO:0010099|16339850|IMP  go_process red light signaling pathway|GO:0010161|16339850|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein binding|GO:0005515|16339850|IPI  go_function zinc ion binding|GO:0008270||ISS  product COL3 (CONSTANS-LIKE 3); protein binding / transcription factor/ zinc ion binding  note CONSTANS-LIKE 3 (COL3); FUNCTIONS IN: protein binding, transcription factor activity, zinc ion binding; INVOLVED IN: red light signaling pathway, regulation of photomorphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: zinc finger (B-box type) family protein (TAIR:AT5G24930.1); Has 1311 Blast hits to 910 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 1204; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).  protein_id AT2G24790.2p  transcript_id AT2G24790.2  protein_id AT2G24790.2p  transcript_id AT2G24790.2  
At2g24791	chr2:010568247	0.0	C/10568247-10568579	AT2G24791.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G18880; glucose transmembrane transporter  
At2g24800	chr2:010572343	0.0	C/10572343-10572570,10572072-10572251,10571754-10571919,10571255-10571670	AT2G24800.1  CDS  gene_syn F27C12.28, F27C12_28  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT4G31760.1); Has 3188 Blast hits to 3171 proteins in 245 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 306; Plants - 2827; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT2G24800.1p  transcript_id AT2G24800.1  protein_id AT2G24800.1p  transcript_id AT2G24800.1  
At2g24810	chr2:010573862	0.0	W/10573862-10573916,10574033-10574188,10574247-10574381,10574464-10574699	AT2G24810.1  CDS  gene_syn F27C12.27, F27C12_27  go_component endomembrane system|GO:0012505||IEA  go_process response to other organism|GO:0051707||ISS  go_function molecular_function|GO:0003674||ND  product pathogenesis-related thaumatin family protein  note pathogenesis-related thaumatin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: pathogenesis-related thaumatin family protein (TAIR:AT1G19320.1); Has 836 Blast hits to 779 proteins in 118 species: Archae - 0; Bacteria - 2; Metazoa - 43; Fungi - 29; Plants - 761; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G24810.1p  transcript_id AT2G24810.1  protein_id AT2G24810.1p  transcript_id AT2G24810.1  
At2g24820	chr2:010575038	0.0	W/10575038-10575432,10575524-10575626,10575708-10576829	AT2G24820.1  CDS  gene_syn F27C12.26, F27C12_26, TIC55, TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 55  gene TIC55  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process oxidation reduction|GO:0055114||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function 2 iron, 2 sulfur cluster binding|GO:0051537||IEA  product TIC55 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 55); 2 iron, 2 sulfur cluster binding / electron carrier/ oxidoreductase  note TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 55 (TIC55); FUNCTIONS IN: electron carrier activity, oxidoreductase activity, 2 iron, 2 sulfur cluster binding; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rieske [2Fe-2S] iron-sulphur domain (InterPro:IPR017941), Rieske [2Fe-2S] region (InterPro:IPR005806), Pheophorbide a oxygenase (InterPro:IPR013626); BEST Arabidopsis thaliana protein match is: ACD1 (ACCELERATED CELL DEATH 1); iron-sulfur cluster binding / pheophorbide a oxygenase (TAIR:AT3G44880.1); Has 3911 Blast hits to 3911 proteins in 569 species: Archae - 4; Bacteria - 2549; Metazoa - 42; Fungi - 34; Plants - 263; Viruses - 0; Other Eukaryotes - 1019 (source: NCBI BLink).  protein_id AT2G24820.1p  transcript_id AT2G24820.1  protein_id AT2G24820.1p  transcript_id AT2G24820.1  
At2g24830	chr2:010579029	0.0	C/10579029-10579154,10578509-10578802,10578160-10578220,10576993-10578005	AT2G24830.1  CDS  gene_syn F27C12.25, F27C12_25  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component intracellular|GO:0005622||ISS  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein  note zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), D111/G-patch (InterPro:IPR000467); Has 501 Blast hits to 489 proteins in 119 species: Archae - 0; Bacteria - 3; Metazoa - 313; Fungi - 67; Plants - 67; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT2G24830.1p  transcript_id AT2G24830.1  protein_id AT2G24830.1p  transcript_id AT2G24830.1  
At2g24834	chr2:010580135	0.0	W/10580135-10580311	AT2G24834.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G24834.1p  transcript_id AT2G24834.1  protein_id AT2G24834.1p  transcript_id AT2G24834.1  
At2g24840	chr2:010581082	0.0	W/10581082-10581876	AT2G24840.1  CDS  gene_syn AGAMOUS-LIKE 61, AGL61, DIA, DIANA, F27C12.24, F27C12_24  gene AGL61  function Encodes a member of the Agamous-like family of transcription factors. Localized to the nucleus in the central cell and endosperm of the female gametophyte. Loss of function mutations show reduced female fertility. Fifty percent of ovules have defective central cells with abnormal morphology and patterns of gene expression. Upon fertilization 50% of seeds abort. Using yeast two hybrid assays AGL61 was shown to interact with AGL80, another MADS box gene with similar defects in ovule development. These data suggest that AGL61 and 80 together are required for proper differentiation of the central cell.  go_component nucleus|GO:0005634|18599653|IDA  go_process embryo sac central cell differentiation|GO:0009559|18599653|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL61 (AGAMOUS-LIKE 61); DNA binding / transcription factor  note AGAMOUS-LIKE 61 (AGL61); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: embryo sac central cell differentiation; LOCATED IN: nucleus; EXPRESSED IN: central cell, endosperm; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL62 (Agamous-like 62); DNA binding / transcription factor (TAIR:AT5G60440.1); Has 4104 Blast hits to 4103 proteins in 547 species: Archae - 0; Bacteria - 0; Metazoa - 548; Fungi - 203; Plants - 3307; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT2G24840.1p  transcript_id AT2G24840.1  protein_id AT2G24840.1p  transcript_id AT2G24840.1  
At2g24850	chr2:010584860	0.0	C/10584860-10585152,10584343-10584685,10584000-10584218,10583841-10583900,10583606-10583761,10583399-10583492,10583070-10583242	AT2G24850.1  CDS  gene_syn F27C12.23, F27C12_23, TAT, TAT3, TYROSINE AMINOTRANSFERASE, TYROSINE AMINOTRANSFERASE 3  gene TAT3  function Encodes a tyrosine aminotransferase that is responsive to treatment with jasmonic acid.  go_component cellular_component|GO:0005575||ND  go_process biosynthetic process|GO:0009058||ISS  go_process response to wounding|GO:0009611|17675405|IEP  go_process response to wounding|GO:0009611|9342878|IEP  go_process response to jasmonic acid stimulus|GO:0009753|9342878|IEP  go_function L-tyrosine:2-oxoglutarate aminotransferase activity|GO:0004838|9342878|ISS  go_function transaminase activity|GO:0008483||ISS  product TAT3 (TYROSINE AMINOTRANSFERASE 3); L-tyrosine:2-oxoglutarate aminotransferase/ transaminase  note TYROSINE AMINOTRANSFERASE 3 (TAT3); FUNCTIONS IN: transaminase activity, L-tyrosine:2-oxoglutarate aminotransferase activity; INVOLVED IN: response to jasmonic acid stimulus, biosynthetic process, response to wounding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Tyrosine/nicotianamine aminotransferase (InterPro:IPR005958), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: SUR1 (SUPERROOT 1); S-alkylthiohydroximate lyase/ carbon-sulfur lyase/ transaminase (TAIR:AT2G20610.1); Has 24522 Blast hits to 24520 proteins in 1727 species: Archae - 592; Bacteria - 14791; Metazoa - 643; Fungi - 475; Plants - 876; Viruses - 0; Other Eukaryotes - 7145 (source: NCBI BLink).  protein_id AT2G24850.1p  transcript_id AT2G24850.1  protein_id AT2G24850.1p  transcript_id AT2G24850.1  
At2g24860	chr2:010588034	0.0	C/10588034-10588240,10587298-10587447,10587118-10587195	AT2G24860.1  CDS  gene_syn F27C12.22, F27C12_22  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  product chaperone protein dnaJ-related  note chaperone protein dnaJ-related; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, cysteine-rich region (InterPro:IPR001305); Has 65 Blast hits to 65 proteins in 20 species: Archae - 0; Bacteria - 8; Metazoa - 8; Fungi - 2; Plants - 40; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT2G24860.1p  transcript_id AT2G24860.1  protein_id AT2G24860.1p  transcript_id AT2G24860.1  
At2g24870	chr2:010588660	0.0	C/10588660-10589016	AT2G24870.1  CDS  gene_syn F27C12.21, F27C12_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product self-incompatibility protein-related  note self-incompatibility protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27331.1); Has 61 Blast hits to 61 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G24870.1p  transcript_id AT2G24870.1  protein_id AT2G24870.1p  transcript_id AT2G24870.1  
At2g24880	chr2:010590554	0.0	C/10590554-10590862	AT2G24880.1  CDS  gene_syn F27C12.20, F27C12_20  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product self-incompatibility protein-related  note self-incompatibility protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: pedicel, leaf; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: self-incompatibility protein-related (TAIR:AT2G24870.1); Has 48 Blast hits to 48 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G24880.1p  transcript_id AT2G24880.1  protein_id AT2G24880.1p  transcript_id AT2G24880.1  
At2g24890	chr2:010593171	0.0	W/10593171-10595906	AT2G24890.1  mRNA_TE_gene  pseudo  gene_syn F27C12.19  note Transposable element gene, Mutator-like transposase family, has a 4.7e-61 P-value blast match to O22273 /233-373 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g24900	chr2:010596299	0.0	C/10596299-10597315	AT2G24900.1  mRNA_TE_gene  pseudo  gene_syn F27C12.18, F27C12_18  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07690.1); similar to Nucleic acid-binding, OB-fold, subgroup [Medicago truncatula] (GB:ABE80110.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At2g24910	chr2:010598131	0.0	W/10598131-10598673	AT2G24910.1  mRNA_TE_gene  pseudo  gene_syn F27C12.17, F27C12_17  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35035.1)  
At2g24915	chr2:010599227	0.0	C/10599227-10599766	AT2G24915.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G30480.1); similar to GRF zinc finger containing protein [Brassica oleracea] (GB:ABD64950.1)  
At2g24920	chr2:010601860	0.0	W/10601860-10602450	AT2G24920.1  mRNA_TE_gene  pseudo  gene_syn F27C12.16, F27C12_16  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30470.1); contains InterPro domain Protein of unknown function DUF730; (InterPro:IPR007989)  
At2g24930	chr2:010603974	0.0	C/10603974-10608030	AT2G24930.1  mRNA_TE_gene  pseudo  gene_syn F27C12.15, F27C12_15  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G30640.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD65034.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At2g24940	chr2:010609447	0.0	W/10609447-10609749	AT2G24940.1  CDS  gene_syn Arabidopsis thaliana membrane-associated progesterone binding protein 2, AtMAPR2, F27C12.14, F27C12_14  gene AtMAPR2  go_function heme binding|GO:0020037||IEA  go_component cellular_component|GO:0005575||ND  product AtMAPR2 (Arabidopsis thaliana membrane-associated progesterone binding protein 2); heme binding  note Arabidopsis thaliana membrane-associated progesterone binding protein 2 (AtMAPR2); FUNCTIONS IN: heme binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Cytochrome b5, heme-binding site (InterPro:IPR018506), Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: MSBP1 (membrane steroid binding protein 1); steroid binding (TAIR:AT5G52240.1); Has 795 Blast hits to 795 proteins in 140 species: Archae - 2; Bacteria - 9; Metazoa - 377; Fungi - 218; Plants - 121; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT2G24940.1p  transcript_id AT2G24940.1  protein_id AT2G24940.1p  transcript_id AT2G24940.1  
At2g24945	chr2:010611744	0.0	W/10611744-10612214	AT2G24945.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G36925.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G24945.1p  transcript_id AT2G24945.1  protein_id AT2G24945.1p  transcript_id AT2G24945.1  
At2g24950	chr2:010613105	0.0	W/10613105-10613320,10613459-10613551,10613640-10613858,10613970-10614125,10614282-10614335,10614462-10614605,10615210-10615563	AT2G24950.1  CDS  gene_syn F27C12.13, F27C12_13  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G15050.1); Has 366 Blast hits to 343 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 364; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G24950.1p  transcript_id AT2G24950.1  protein_id AT2G24950.1p  transcript_id AT2G24950.1  
At2g24960	chr2:010617263	0.0	W/10617263-10617592,10617664-10617802,10617882-10618213,10618290-10618754,10618824-10618974,10619050-10619450,10619528-10620034	AT2G24960.2  CDS  gene_syn F27C12.12, F27C12_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.1); Has 914 Blast hits to 306 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 30; Plants - 884; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G24960.2p  transcript_id AT2G24960.2  protein_id AT2G24960.2p  transcript_id AT2G24960.2  
At2g24960	chr2:010617263	0.0	W/10617263-10617592,10617664-10617802,10617882-10618213,10618290-10618974,10619050-10619450,10619528-10620034	AT2G24960.1  CDS  gene_syn F27C12.12, F27C12_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.1); Has 838 Blast hits to 293 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 21; Plants - 817; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G24960.1p  transcript_id AT2G24960.1  protein_id AT2G24960.1p  transcript_id AT2G24960.1  
At2g24970	chr2:010621125	0.0	C/10621125-10621250,10620955-10621050,10620633-10620755,10620384-10620423,10620215-10620288	AT2G24970.1  CDS  gene_syn F27C12.11, F27C12_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 17 Blast hits to 17 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G24970.1p  transcript_id AT2G24970.1  protein_id AT2G24970.1p  transcript_id AT2G24970.1  
At2g24980	chr2:010622453	0.0	W/10622453-10624132	AT2G24980.1  CDS  gene_syn F27C12.10, F27C12_10  go_component endomembrane system|GO:0012505||IEA  go_process plant-type cell wall organization|GO:0009664||IEA  go_function structural constituent of cell wall|GO:0005199||IEA  product proline-rich extensin-like family protein  note proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Extensin-like region (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: proline-rich extensin-like family protein (TAIR:AT5G06630.1); Has 193233 Blast hits to 28729 proteins in 1169 species: Archae - 410; Bacteria - 23644; Metazoa - 77507; Fungi - 29562; Plants - 28690; Viruses - 5472; Other Eukaryotes - 27948 (source: NCBI BLink).  protein_id AT2G24980.1p  transcript_id AT2G24980.1  protein_id AT2G24980.1p  transcript_id AT2G24980.1  
At2g24990	chr2:010625285	0.0	W/10625285-10625590,10625835-10625963,10626066-10626158,10626265-10626344,10626430-10626543,10626779-10626852,10627020-10627096,10627204-10627287,10627391-10627483,10627565-10627672,10627753-10627824,10627916-10628299	AT2G24990.1  CDS  gene_syn F27C12.9, F27C12_9  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  product RIO1 family protein  note RIO1 family protein; FUNCTIONS IN: protein serine/threonine kinase activity, catalytic activity, ATP binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RIO-like kinase (InterPro:IPR018934), Serine/threonine-protein kinase Rio1 (InterPro:IPR017407), RIO kinase (InterPro:IPR000687), RIO kinase, conserved site (InterPro:IPR018935), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: RIO1 family protein (TAIR:AT5G37350.1); Has 26478 Blast hits to 10938 proteins in 708 species: Archae - 285; Bacteria - 858; Metazoa - 13271; Fungi - 2044; Plants - 896; Viruses - 360; Other Eukaryotes - 8764 (source: NCBI BLink).  protein_id AT2G24990.1p  transcript_id AT2G24990.1  protein_id AT2G24990.1p  transcript_id AT2G24990.1  
At2g25000	chr2:010629812	0.0	W/10629812-10629868,10629963-10630025,10630230-10630538,10630622-10630738,10630826-10631095	AT2G25000.1  CDS  gene_syn ATWRKY60, F27C12.8, F27C12_8, WRKY DNA-BINDING PROTEIN 60, WRKY60  gene WRKY60  function Pathogen-induced transcription factor. Forms protein complexes with itself and with WRKY40. Coexpression with WRKY18 or WRKY40 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.  go_component nucleus|GO:0005634|16603654|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_process response to salicylic acid stimulus|GO:0009751|12602888|IEP  go_process regulation of defense response|GO:0031347|12068113|IMP  go_process defense response to bacterium|GO:0042742|12602888|IEP  go_process defense response to fungus|GO:0050832|16603654|IEP  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY60; transcription factor  note WRKY60; FUNCTIONS IN: transcription factor activity; INVOLVED IN: defense response to fungus, defense response to bacterium, regulation of transcription, DNA-dependent, regulation of defense response, response to salicylic acid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY18; transcription factor (TAIR:AT4G31800.1); Has 1919 Blast hits to 1649 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1905; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT2G25000.1p  transcript_id AT2G25000.1  protein_id AT2G25000.1p  transcript_id AT2G25000.1  
At2g25010	chr2:010631691	0.0	W/10631691-10631774,10631851-10632507,10632597-10632746,10632821-10633207,10633296-10633547	AT2G25010.1  CDS  gene_syn F27C12.7, F27C12_7  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17930.1); Has 501 Blast hits to 495 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 501; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G25010.1p  transcript_id AT2G25010.1  protein_id AT2G25010.1p  transcript_id AT2G25010.1  
At2g25011	chr2:010634280	0.0	C/10634280-10634616	AT2G25011.1  miRNA  gene_syn MICRORNA836A, MIR836A  gene MIR836A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCCUGUGUUUCCUUUGAUGCGUGG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR836A (MICRORNA836A); miRNA  transcript_id AT2G25011.1  
At2g25015	chr2:010634415	0.0	W/10634415-10636130	AT2G25015.1  pseudogenic_transcript  pseudo  note pseudogene, similar to Hypothetical protein, blastp match of 39% identity and 2.3e-08 P-value to GP|20219037|gb|AAM15781.1|AC104428_2|AC104428 Hypothetical protein {Oryza sativa (japonica cultivar-group)}  
At2g25020	chr2:010639089	0.0	W/10639089-10642250	AT2G25020.1  pseudogenic_transcript  pseudo  gene_syn F27C12.6, F27C12_6  note pseudogene, similar to Hypothetical protein, contains similarity to Swiss-Prot:Q61687 transcriptional regulator ATRX (X-linked nuclear protein, Heterochromatin protein 2, HP1 alpha-interacting protein, HP1-BP38 protein) (Mus musculus); blastp match of 38% identity and 2.2e-95 P-value to GP|20219037|gb|AAM15781.1|AC104428_2|AC104428 Hypothetical protein {Oryza sativa (japonica cultivar-group)}  
At2g25025	chr2:010644561	0.0	W/10644561-10644989	AT2G25025.1  pseudogenic_transcript  pseudo  note pseudogene, similar to DAL3 protein, blastp match of 40% identity and 6.4e-10 P-value to GP|695690|emb|CAA55868.1||X79281 DAL3 protein {Picea abies}  
At2g25030	chr2:010648663	0.0	W/10648663-10650450	AT2G25030.1  pseudogenic_transcript  pseudo  note pseudogene, HSP100/ClpB, putative, similar to HSP100/ClpB GI:9651530 (Phaseolus lunatus); blastp match of 77% identity and 3.4e-113 P-value to GP|9651530|gb|AAF91178.1|AF203700_1|AF203700 ClpB {Phaseolus lunatus}  
At2g25040	chr2:010651599	0.0	W/10651599-10651901	AT2G25040.1  pseudogenic_transcript  pseudo  note pseudogene, similar to ClpB, blastp match of 70% identity and 9.9e-20 P-value to GP|9651530|gb|AAF91178.1|AF203700_1|AF203700 ClpB {Phaseolus lunatus}  
At2g25050	chr2:010658709	0.0	C/10658709-10659383,10658389-10658610,10656769-10658090,10656553-10656679,10656344-10656415,10656090-10656188,10655914-10655955,10655737-10655817,10655592-10655642,10655417-10655498,10655195-10655289,10654955-10655026,10654741-10654857,10654583-10654651,10654402-10654468,10654108-10654250	AT2G25050.1  CDS  gene_syn F27C12.3, F27C12_3  go_process cellular component organization|GO:0016043||IEA  go_process actin cytoskeleton organization|GO:0030036||IEA  go_function actin binding|GO:0003779|12417149|ISS  go_function actin binding|GO:0003779|15256004|ISS  go_function actin binding|GO:0003779||ISS  product formin homology 2 domain-containing protein / FH2 domain-containing protein  note formin homology 2 domain-containing protein / FH2 domain-containing protein; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; CONTAINS InterPro DOMAIN/s: Phosphatase tensin type (InterPro:IPR014019), Actin-binding FH2 and DRF autoregulatory (InterPro:IPR003104), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Actin-binding FH2 (InterPro:IPR015425), Tensin phosphatase, C2 domain (InterPro:IPR014020); BEST Arabidopsis thaliana protein match is: formin homology 2 domain-containing protein / FH2 domain-containing protein (TAIR:AT3G32400.1); Has 81727 Blast hits to 43952 proteins in 1298 species: Archae - 142; Bacteria - 9305; Metazoa - 36688; Fungi - 12327; Plants - 9705; Viruses - 2404; Other Eukaryotes - 11156 (source: NCBI BLink).  protein_id AT2G25050.1p  transcript_id AT2G25050.1  protein_id AT2G25050.1p  transcript_id AT2G25050.1  
At2g25052	chr2:010660074	0.0	C/10660074-10660226	AT2G25052.1  CDS  product unknown protein  note unknown protein; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G25052.1p  transcript_id AT2G25052.1  protein_id AT2G25052.1p  transcript_id AT2G25052.1  
At2g25060	chr2:010662308	0.0	W/10662308-10662503,10662578-10662930	AT2G25060.1  CDS  gene_syn F13D4.2  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component anchored to plasma membrane|GO:0046658|12805588|IDA  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function copper ion binding|GO:0005507||ISS  product plastocyanin-like domain-containing protein  note plastocyanin-like domain-containing protein; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: plastocyanin-like domain-containing protein (TAIR:AT4G31840.1); Has 808 Blast hits to 799 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 808; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G25060.1p  transcript_id AT2G25060.1  protein_id AT2G25060.1p  transcript_id AT2G25060.1  
At2g25070	chr2:010665250	0.0	C/10665250-10665366,10665103-10665166,10664823-10664931,10664582-10664735,10664237-10664486,10664066-10664142,10663930-10663982,10663789-10663843,10663517-10663705	AT2G25070.1  CDS  gene_syn F13D4.1  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT4G31860.1); Has 4621 Blast hits to 4451 proteins in 318 species: Archae - 2; Bacteria - 169; Metazoa - 1530; Fungi - 544; Plants - 1338; Viruses - 7; Other Eukaryotes - 1031 (source: NCBI BLink).  protein_id AT2G25070.1p  transcript_id AT2G25070.1  protein_id AT2G25070.1p  transcript_id AT2G25070.1  
At2g25080	chr2:010668134	0.0	W/10668134-10668388,10668704-10668780,10668875-10668936,10669355-10669473,10669546-10669713,10669799-10669828	AT2G25080.1  CDS  gene_syn ATGPX1, F13D4.40, F13D4_40, GLUTATHIONE PEROXIDASE 1  gene ATGPX1  function Encodes glutathione peroxidase.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process response to oxidative stress|GO:0006979||IEA  go_function glutathione peroxidase activity|GO:0004602||IEA  go_component chloroplast|GO:0009507|14617062|ISS  go_function glutathione peroxidase activity|GO:0004602||ISS  product ATGPX1 (GLUTATHIONE PEROXIDASE 1); glutathione peroxidase  note GLUTATHIONE PEROXIDASE 1 (ATGPX1); FUNCTIONS IN: glutathione peroxidase activity; INVOLVED IN: response to oxidative stress; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336), Glutathione peroxidase (InterPro:IPR000889); BEST Arabidopsis thaliana protein match is: ATGPX7 (glutathione peroxidase 7); glutathione peroxidase (TAIR:AT4G31870.1); Has 5570 Blast hits to 5569 proteins in 1023 species: Archae - 0; Bacteria - 2071; Metazoa - 690; Fungi - 136; Plants - 244; Viruses - 8; Other Eukaryotes - 2421 (source: NCBI BLink).  protein_id AT2G25080.1p  transcript_id AT2G25080.1  protein_id AT2G25080.1p  transcript_id AT2G25080.1  
At2g25090	chr2:010671910	0.0	C/10671910-10672610,10670542-10671250	AT2G25090.1  CDS  gene_syn CBL-INTERACTING PROTEIN KINASE 16, CIPK16, F13D4.161, F13D4_161, SNF1-RELATED PROTEIN KINASE 3.18, SnRK3.18  gene CIPK16  function Encodes a member of the SNF1-related kinase (SnRK) gene family (SnRK3.18), which has also been reported as a member of the CBL-interacting protein kinases (CIPK16).  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product CIPK16 (CBL-INTERACTING PROTEIN KINASE 16); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note CBL-INTERACTING PROTEIN KINASE 16 (CIPK16); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: signal transduction, protein amino acid phosphorylation; EXPRESSED IN: stem, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CIPK5 (CBL-INTERACTING PROTEIN KINASE 5); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G10930.1); Has 95945 Blast hits to 94241 proteins in 3141 species: Archae - 83; Bacteria - 8670; Metazoa - 41527; Fungi - 8740; Plants - 18216; Viruses - 496; Other Eukaryotes - 18213 (source: NCBI BLink).  protein_id AT2G25090.1p  transcript_id AT2G25090.1  protein_id AT2G25090.1p  transcript_id AT2G25090.1  
At2g25095	chr2:010676472	0.0	C/10676472-10676553	AT2G25095.1  miRNA  gene_syn MICRORNA 156A, MIR156A  gene MIR156A  function Encodes a microRNA that targets several SPL family members, including SPL3,4, and 5. By regulating the expression of SPL3 (and probably also SPL4 and SPL5), this microRNA regulates vegetative phase change. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGACAGAAGAGAGUGAGCAC  go_process gene silencing by miRNA|GO:0035195|15851028|IDA  go_process gene silencing by miRNA|GO:0035195|16914499|IEP  product MIR156A (MICRORNA 156A); miRNA  transcript_id AT2G25095.1  
At2g25100	chr2:010681570	0.0	C/10681570-10681654,10681416-10681487,10680753-10680876,10680576-10680606,10680275-10680500,10680081-10680201,10679767-10679941	AT2G25100.2  CDS  gene_syn F13D4.60, F13D4_60  go_process RNA metabolic process|GO:0016070||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function ribonuclease H activity|GO:0004523||IEA  go_function catalytic activity|GO:0003824||ISS  product ribonuclease HII family protein  note ribonuclease HII family protein; FUNCTIONS IN: ribonuclease H activity, RNA binding, catalytic activity, nucleic acid binding; INVOLVED IN: RNA metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit A (InterPro:IPR004649), Ribonuclease HII/HIII (InterPro:IPR001352), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); Has 4025 Blast hits to 4019 proteins in 1362 species: Archae - 172; Bacteria - 2409; Metazoa - 122; Fungi - 97; Plants - 22; Viruses - 2; Other Eukaryotes - 1201 (source: NCBI BLink).  protein_id AT2G25100.2p  transcript_id AT2G25100.2  protein_id AT2G25100.2p  transcript_id AT2G25100.2  
At2g25100	chr2:010681570	0.0	C/10681570-10681654,10681416-10681487,10680753-10680876,10680576-10680663,10680275-10680500,10680081-10680201,10679767-10679941	AT2G25100.1  CDS  gene_syn F13D4.60, F13D4_60  go_process RNA metabolic process|GO:0016070||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function ribonuclease H activity|GO:0004523||IEA  go_function catalytic activity|GO:0003824||ISS  product ribonuclease HII family protein  note ribonuclease HII family protein; FUNCTIONS IN: ribonuclease H activity, RNA binding, catalytic activity, nucleic acid binding; INVOLVED IN: RNA metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit A (InterPro:IPR004649), Ribonuclease HII/HIII (InterPro:IPR001352), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); Has 3668 Blast hits to 3662 proteins in 1253 species: Archae - 178; Bacteria - 2185; Metazoa - 122; Fungi - 97; Plants - 22; Viruses - 2; Other Eukaryotes - 1062 (source: NCBI BLink).  protein_id AT2G25100.1p  transcript_id AT2G25100.1  protein_id AT2G25100.1p  transcript_id AT2G25100.1  
At2g25110	chr2:010684428	0.0	W/10684428-10684535,10684667-10684807,10684970-10685110,10685349-10685398,10685490-10685619,10685752-10685838	AT2G25110.1  CDS  gene_syn F13D4.70, F13D4_70, SDF2, STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEIN PRECURSOR  gene SDF2  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SDF2 (STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEIN PRECURSOR)  note STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEIN PRECURSOR (SDF2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: MIR (InterPro:IPR003608), MIR motif (InterPro:IPR016093); Has 774 Blast hits to 744 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 337; Fungi - 338; Plants - 41; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT2G25110.1p  transcript_id AT2G25110.1  protein_id AT2G25110.1p  transcript_id AT2G25110.1  
At2g25120	chr2:010689934	0.0	W/10689934-10690227,10690640-10690702,10690784-10691569	AT2G25120.1  CDS  gene_syn F13D4.80, F13D4_80  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product bromo-adjacent homology (BAH) domain-containing protein  note bromo-adjacent homology (BAH) domain-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Bromo adjacent region (InterPro:IPR001025); BEST Arabidopsis thaliana protein match is: bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT4G23120.1); Has 530 Blast hits to 457 proteins in 85 species: Archae - 0; Bacteria - 3; Metazoa - 167; Fungi - 77; Plants - 152; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).  protein_id AT2G25120.1p  transcript_id AT2G25120.1  protein_id AT2G25120.1p  transcript_id AT2G25120.1  
At2g25130	chr2:010696403	0.0	C/10696403-10696959,10695243-10696092	AT2G25130.1  CDS  gene_syn F13D4.90, F13D4_90  go_component chloroplast|GO:0009507||IEA  go_function binding|GO:0005488||IEA  product armadillo/beta-catenin repeat family protein  note armadillo/beta-catenin repeat family protein; FUNCTIONS IN: binding; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein (TAIR:AT4G31890.1); Has 822 Blast hits to 770 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 90; Fungi - 77; Plants - 608; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT2G25130.1p  transcript_id AT2G25130.1  protein_id AT2G25130.1p  transcript_id AT2G25130.1  
At2g25140	chr2:010701753	0.0	C/10701753-10701998,10701459-10701677,10701141-10701375,10700741-10700936,10700603-10700657,10700314-10700464,10699745-10700053,10699379-10699644,10698258-10699187,10697877-10698164	AT2G25140.1  CDS  gene_syn CASEIN LYTIC PROTEINASE B-M, CASEIN LYTIC PROTEINASE B4, CLPB-M, CLPB4, F13D4.100, F13D4_100, HEAT SHOCK PROTEIN 98.7, HSP98.7  gene CLPB4  function Encodes ClpB4, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family. Targeted to the mitochondrion, also referred to as ClpB-m. Transcripts of ClpB4 accumulate dramatically at high temperatures, suggesting that it may be involved in response to heat stress.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component mitochondrion|GO:0005739|17144892|IDA  go_process response to heat|GO:0009408|10889261|ISS  go_function ATP binding|GO:0005524||ISS  go_function ATPase activity|GO:0016887||ISS  product CLPB4 (CASEIN LYTIC PROTEINASE B4); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding  note CASEIN LYTIC PROTEINASE B4 (CLPB4); FUNCTIONS IN: protein binding, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: response to heat; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase associated with various cellular activities, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpB (InterPro:IPR017730), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: CLPB3 (CASEIN LYTIC PROTEINASE B3); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding (TAIR:AT5G15450.1); Has 20376 Blast hits to 18220 proteins in 1834 species: Archae - 251; Bacteria - 10925; Metazoa - 716; Fungi - 384; Plants - 376; Viruses - 7; Other Eukaryotes - 7717 (source: NCBI BLink).  protein_id AT2G25140.1p  transcript_id AT2G25140.1  protein_id AT2G25140.1p  transcript_id AT2G25140.1  
At2g25150	chr2:010703814	0.0	C/10703814-10704266,10703445-10703696,10702582-10703262	AT2G25150.1  CDS  gene_syn F13D4.110, F13D4_110  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: SDT (SPERMIDINE DISINAPOYL ACYLTRANSFERASE); sinapoyl spermidine:sinapoyl CoA N-acyltransferase/ spermidine:sinapoyl CoA N-acyltransferase/ transferase (TAIR:AT2G23510.1); Has 1217 Blast hits to 1209 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 35; Plants - 1182; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G25150.1p  transcript_id AT2G25150.1  protein_id AT2G25150.1p  transcript_id AT2G25150.1  
At2g25160	chr2:010710282	0.0	C/10710282-10711211,10709902-10710181,10709236-10709609	AT2G25160.1  CDS  gene_syn CYP82F1, CYTOCHROME P450, FAMILY 82, SUBFAMILY F, POLYPEPTIDE 1, F13D4.120, F13D4_120  gene CYP82F1  function member of CYP82F  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP82F1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP82F1; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP82C4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G31940.1); Has 22793 Blast hits to 22678 proteins in 1205 species: Archae - 21; Bacteria - 1827; Metazoa - 10293; Fungi - 4201; Plants - 5638; Viruses - 3; Other Eukaryotes - 810 (source: NCBI BLink).  protein_id AT2G25160.1p  transcript_id AT2G25160.1  protein_id AT2G25160.1p  transcript_id AT2G25160.1  
At2g25169	chr2:010713931	0.0	C/10713931-10714014,10713343-10713458,10712914-10712978,10712606-10712715	AT2G25169.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT2G25169.1p  transcript_id AT2G25169.1  protein_id AT2G25169.1p  transcript_id AT2G25169.1  
At2g25170	chr2:010714411	0.0	W/10714411-10714551,10714646-10714783,10714874-10715028,10715131-10715292,10715561-10715775,10715867-10715962,10716070-10716206,10716300-10716512,10716603-10716710,10716872-10716922,10717013-10717112,10717244-10717386,10717502-10717605,10717704-10717842,10718600-10718769,10719145-10719211,10719300-10719422,10719632-10719741,10719888-10719969,10720586-10720780,10721263-10721410,10721510-10721612,10721758-10721832,10721947-10722011,10722119-10722195,10722384-10722514,10722620-10722959,10723044-10723176,10723250-10723323,10723404-10723763	AT2G25170.1  CDS  gene_syn AT2G25170.1, CHD3, CHD3 PROTEIN, CHR6, GYM, GYMNOS, PICKLE, PKL, SSL2, SUPPRESSOR OF SLR 2  gene PKL  function Encodes a SWI/SWF nuclear-localized chromatin remodeling factor of the CHD3 group. Involved in post-germination repression of embryonic development. Acts with GA to establish repression of embryonic genes upon germination. Protein preferentially accumulates in differentiating tissues. Loss of function alleles are associated with expression of embryonic traits in adult plants and derepression of embryonic genes such as PHEROS1. Is an extragenic suppressor of slr2 (SSL2). Mutations in PKL (SSL2) restores lateral root formation in the slr2 mutant slr-1. It was proposed that PKL/SSL2-mediated chromatin remodeling negatively regulates auxin-mediated LR formation in Arabidopsis.  go_component nucleus|GO:0005634|16359393|IDA  go_process cell proliferation|GO:0008283|9204906|IMP  go_process response to auxin stimulus|GO:0009733|17010112|IMP  go_process response to gibberellin stimulus|GO:0009739|9204906|IMP  go_process negative regulation of abscisic acid mediated signaling|GO:0009788|17892443|IMP  go_process negative regulation of transcription|GO:0016481|10570159|IMP  go_process chromatin modification|GO:0016568|10570159|ISS  go_process root development|GO:0048364|9204906|IMP  go_process lateral root development|GO:0048527|17010112|IMP  go_function DNA binding|GO:0003677|10570159|ISS  go_function DNA helicase activity|GO:0003678|10570159|ISS  go_function ATPase activity|GO:0016887|10570159|ISS  product PKL (PICKLE); ATPase/ DNA binding / DNA helicase  note PICKLE (PKL); FUNCTIONS IN: DNA helicase activity, ATPase activity, DNA binding; INVOLVED IN: in 8 processes; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 (InterPro:IPR009463), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), Protein of unknown function DUF1086 (InterPro:IPR009462), Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor, putative (TAIR:AT4G31900.1); Has 13971 Blast hits to 11779 proteins in 1101 species: Archae - 111; Bacteria - 2710; Metazoa - 4341; Fungi - 2844; Plants - 853; Viruses - 116; Other Eukaryotes - 2996 (source: NCBI BLink).  protein_id AT2G25170.1p  transcript_id AT2G25170.1  protein_id AT2G25170.1p  transcript_id AT2G25170.1  
At2g25171	chr2:010718096	0.0	W/10718096-10718198	AT2G25171.1  miRNA  gene_syn MICRORNA862A, MIR862A  gene MIR862A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCCAAUAGGUCGAGCAUGUGC  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR862A (MICRORNA862A); miRNA  transcript_id AT2G25171.1  
At2g25180	chr2:010726835	0.0	C/10726835-10726961,10726402-10726554,10725899-10726273,10725733-10725809,10724653-10725636,10724490-10724564	AT2G25180.1  CDS  gene_syn ARABIDOPSIS RESPONSE REGULATOR 12, ARR12, F13D4.140, F13D4_140  gene ARR12  function Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway.  go_component nucleus|GO:0005634|15173562|IDA  go_process response to cytokinin stimulus|GO:0009735|16227453|IGI  go_process response to cytokinin stimulus|GO:0009735|18723577|IGI  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_process cytokinin mediated signaling|GO:0009736|18723577|IGI  go_process regulation of chlorophyll biosynthetic process|GO:0010380|18723577|IGI  go_process regulation of anthocyanin metabolic process|GO:0031537|18723577|IGI  go_process shoot development|GO:0048367|18723577|IGI  go_process primary root development|GO:0080022|18723577|IGI  go_function two-component response regulator activity|GO:0000156|11574878|ISS  go_function two-component response regulator activity|GO:0000156|12068096|ISS  go_function two-component response regulator activity|GO:0000156||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ARR12 (ARABIDOPSIS RESPONSE REGULATOR 12); transcription factor/ two-component response regulator  note ARABIDOPSIS RESPONSE REGULATOR 12 (ARR12); FUNCTIONS IN: transcription factor activity, two-component response regulator activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Response regulator, plant B-type (InterPro:IPR017053), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), CheY-like (InterPro:IPR011006), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Signal transduction response regulator, receiver region (InterPro:IPR001789), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ARR10 (ARABIDOPSIS RESPONSE REGULATOR 10); transcription factor/ two-component response regulator (TAIR:AT4G31920.1); Has 65793 Blast hits to 64894 proteins in 1785 species: Archae - 516; Bacteria - 55285; Metazoa - 29; Fungi - 391; Plants - 1470; Viruses - 3; Other Eukaryotes - 8099 (source: NCBI BLink).  protein_id AT2G25180.1p  transcript_id AT2G25180.1  protein_id AT2G25180.1p  transcript_id AT2G25180.1  
At2g25185	chr2:010731622	0.0	W/10731622-10731673,10731768-10732024	AT2G25185.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47317.1); Has 11 Blast hits to 11 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G25185.1p  transcript_id AT2G25185.1  protein_id AT2G25185.1p  transcript_id AT2G25185.1  
At2g25190	chr2:010734187	0.0	W/10734187-10734325,10734755-10735042,10735131-10735426	AT2G25190.1  CDS  gene_syn F13D4.5  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31980.1); Has 579 Blast hits to 577 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 199; Fungi - 56; Plants - 185; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).  protein_id AT2G25190.1p  transcript_id AT2G25190.1  protein_id AT2G25190.1p  transcript_id AT2G25190.1  
At2g25200	chr2:010736580	0.0	C/10736580-10737644	AT2G25200.1  CDS  gene_syn F13D4.4  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF868, plant (InterPro:IPR008586); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11000.1); Has 140 Blast hits to 140 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 140; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G25200.1p  transcript_id AT2G25200.1  protein_id AT2G25200.1p  transcript_id AT2G25200.1  
At2g25210	chr2:010740157	0.0	W/10740157-10740242,10740331-10740379	AT2G25210.1  CDS  gene_syn T22F11.20, T22F11_20  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L39 (RPL39A)  note 60S ribosomal protein L39 (RPL39A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L39e (InterPro:IPR000077); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L39 (RPL39C) (TAIR:AT4G31985.1); Has 574 Blast hits to 574 proteins in 219 species: Archae - 142; Bacteria - 0; Metazoa - 205; Fungi - 79; Plants - 70; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT2G25210.1p  transcript_id AT2G25210.1  protein_id AT2G25210.1p  transcript_id AT2G25210.1  
At2g25220	chr2:010745456	0.0	C/10745456-10745540,10744970-10745131,10744536-10744798,10744328-10744460,10744124-10744187,10743923-10744019,10743650-10743752,10743338-10743456,10743179-10743268,10742918-10743046	AT2G25220.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G32000.1); Has 90541 Blast hits to 89452 proteins in 3244 species: Archae - 52; Bacteria - 8066; Metazoa - 39802; Fungi - 7190; Plants - 19261; Viruses - 514; Other Eukaryotes - 15656 (source: NCBI BLink).  protein_id AT2G25220.1p  transcript_id AT2G25220.1  protein_id AT2G25220.1p  transcript_id AT2G25220.1  
At2g25230	chr2:010748364	0.0	C/10748364-10748467,10748093-10748219,10747211-10747684	AT2G25230.1  CDS  gene_syn AtMYB100, MYB100, T22F11.18, T22F11_18, myb domain protein 100  gene MYB100  function Encodes a putative transcription factor (MYB100).  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product MYB100 (myb domain protein 100); DNA binding / transcription factor  note myb domain protein 100 (MYB100); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB22 (myb domain protein 22); DNA binding / transcription factor (TAIR:AT5G40430.1); Has 6228 Blast hits to 5567 proteins in 370 species: Archae - 0; Bacteria - 2; Metazoa - 690; Fungi - 359; Plants - 3369; Viruses - 3; Other Eukaryotes - 1805 (source: NCBI BLink).  protein_id AT2G25230.1p  transcript_id AT2G25230.1  protein_id AT2G25230.1p  transcript_id AT2G25230.1  
At2g25240	chr2:010752757	0.0	C/10752757-10753134,10751872-10752651	AT2G25240.1  CDS  gene_syn T22F11.17, T22F11_17  go_function serine-type endopeptidase inhibitor activity|GO:0004867||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function serine-type endopeptidase inhibitor activity|GO:0004867||ISS  product serine-type endopeptidase inhibitor  note serine-type endopeptidase inhibitor; FUNCTIONS IN: serine-type endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protease inhibitor I4, serpin, plant (InterPro:IPR015554), Protease inhibitor I4, serpin (InterPro:IPR000215); BEST Arabidopsis thaliana protein match is: serpin, putative / serine protease inhibitor, putative (TAIR:AT2G26390.1); Has 4880 Blast hits to 4825 proteins in 352 species: Archae - 54; Bacteria - 217; Metazoa - 3794; Fungi - 1; Plants - 213; Viruses - 433; Other Eukaryotes - 168 (source: NCBI BLink).  protein_id AT2G25240.1p  transcript_id AT2G25240.1  protein_id AT2G25240.1p  transcript_id AT2G25240.1  
At2g25250	chr2:010753940	0.0	W/10753940-10754407	AT2G25250.1  CDS  gene_syn T22F11.16, T22F11_16  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32020.1); Has 14 Blast hits to 14 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G25250.1p  transcript_id AT2G25250.1  protein_id AT2G25250.1p  transcript_id AT2G25250.1  
At2g25255	chr2:010755067	0.0	C/10755067-10755327	AT2G25255.1  pseudogenic_transcript  pseudo  function Encodes a defensin-like (DEFL) family protein.  
At2g25260	chr2:010757374	0.0	C/10757374-10757766,10756884-10756951,10756493-10756694,10756312-10756409,10756148-10756217,10755989-10756060,10755773-10755886,10755617-10755676	AT2G25260.1  CDS  gene_syn T22F11.15, T22F11_15  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25265.1); Has 110 Blast hits to 96 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT2G25260.1p  transcript_id AT2G25260.1  protein_id AT2G25260.1p  transcript_id AT2G25260.1  
At2g25270	chr2:010759779	0.0	W/10759779-10759881,10760223-10760425,10760511-10760692,10760774-10761058,10761146-10761204,10761293-10761329,10761406-10761477,10761559-10761883,10761987-10762358	AT2G25270.1  CDS  gene_syn T22F11.14, T22F11_14  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  product unknown protein  note unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G12400.1); Has 91 Blast hits to 89 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G25270.1p  transcript_id AT2G25270.1  protein_id AT2G25270.1p  transcript_id AT2G25270.1  
At2g25280	chr2:010764580	0.0	C/10764580-10764631,10764148-10764232,10764006-10764074,10763819-10763931,10763610-10763721,10763369-10763512,10762984-10763158,10762639-10762764	AT2G25280.1  CDS  gene_syn T22F11.13, T22F11_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mediator of ErbB2-driven cell motility (Memo), related (InterPro:IPR002737); Has 742 Blast hits to 742 proteins in 323 species: Archae - 138; Bacteria - 240; Metazoa - 132; Fungi - 82; Plants - 26; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).  protein_id AT2G25280.1p  transcript_id AT2G25280.1  protein_id AT2G25280.1p  transcript_id AT2G25280.1  
At2g25290	chr2:010766444	0.0	C/10766444-10768517,10766192-10766355	AT2G25290.1  CDS  gene_syn T22F11.12, T22F11_12  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (TAIR:AT4G32070.1); Has 3608 Blast hits to 3114 proteins in 241 species: Archae - 18; Bacteria - 127; Metazoa - 1875; Fungi - 511; Plants - 521; Viruses - 0; Other Eukaryotes - 556 (source: NCBI BLink).  protein_id AT2G25290.1p  transcript_id AT2G25290.1  protein_id AT2G25290.1p  transcript_id AT2G25290.1  
At2g25290	chr2:010766444	0.0	C/10766444-10768517,10766192-10766355	AT2G25290.2  CDS  gene_syn T22F11.12, T22F11_12  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (TAIR:AT4G32070.1).  protein_id AT2G25290.2p  transcript_id AT2G25290.2  protein_id AT2G25290.2p  transcript_id AT2G25290.2  
At2g25295	chr2:010769933	0.0	W/10769933-10769999,10770249-10770421	AT2G25295.1  CDS  gene_syn LCR81, Low-molecular-weight cysteine-rich 81  gene LCR81  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||IEA  product LCR81 (Low-molecular-weight cysteine-rich 81)  note Low-molecular-weight cysteine-rich 81 (LCR81); INVOLVED IN: defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20070.1); Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G25295.1p  transcript_id AT2G25295.1  protein_id AT2G25295.1p  transcript_id AT2G25295.1  
At2g25300	chr2:010774020	0.0	C/10774020-10774156,10773838-10773901,10773705-10773754,10773432-10773616,10773287-10773347,10773100-10773172,10772841-10772964,10772622-10772709,10772481-10772531,10772251-10772322,10772020-10772132,10771922-10771944	AT2G25300.1  CDS  gene_syn T22F11.11, T22F11_11  go_component membrane|GO:0016020||IEA  go_process protein amino acid glycosylation|GO:0006486||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note transferase, transferring glycosyl groups / transferase, transferring hexosyl groups; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: galactosyltransferase family protein (TAIR:AT4G32120.1); Has 369 Blast hits to 368 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 149; Fungi - 0; Plants - 218; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G25300.1p  transcript_id AT2G25300.1  protein_id AT2G25300.1p  transcript_id AT2G25300.1  
At2g25305	chr2:010774904	0.0	C/10774904-10774976,10774621-10774799	AT2G25305.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54215.1); Has 11 Blast hits to 11 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G25305.1p  transcript_id AT2G25305.1  protein_id AT2G25305.1p  transcript_id AT2G25305.1  
At2g25310	chr2:010779023	0.0	C/10779023-10779123,10778786-10778832,10778489-10778588,10778183-10778246,10777974-10778090,10777763-10777871,10777436-10777530	AT2G25310.1  CDS  gene_syn T22F11.10, T22F11_10  go_component endomembrane system|GO:0012505||IEA  go_function carbohydrate binding|GO:0030246||IEA  go_process biological_process|GO:0008150||ND  product carbohydrate binding  note carbohydrate binding; FUNCTIONS IN: carbohydrate binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate-binding-like fold (InterPro:IPR013784); BEST Arabidopsis thaliana protein match is: carbohydrate binding (TAIR:AT4G32130.1); Has 218 Blast hits to 218 proteins in 97 species: Archae - 0; Bacteria - 4; Metazoa - 121; Fungi - 44; Plants - 26; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT2G25310.1p  transcript_id AT2G25310.1  protein_id AT2G25310.1p  transcript_id AT2G25310.1  
At2g25312	chr2:010780074	0.0	C/10780074-10780409	AT2G25312.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44428.1); Has 11 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G25312.1p  transcript_id AT2G25312.1  protein_id AT2G25312.1p  transcript_id AT2G25312.1  
At2g25320	chr2:010786721	0.0	C/10786721-10788065,10786101-10786565,10785709-10786010,10784827-10785540,10784457-10784735,10784151-10784312,10783127-10784065,10782808-10783023,10782383-10782643,10781951-10782289	AT2G25320.1  CDS  gene_syn T22F11.9, T22F11_9  go_component chloroplast|GO:0009507||IEA  product unknown protein  note LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT2G25330.1); Has 59993 Blast hits to 32072 proteins in 1426 species: Archae - 584; Bacteria - 5166; Metazoa - 31897; Fungi - 4070; Plants - 2329; Viruses - 207; Other Eukaryotes - 15740 (source: NCBI BLink).  protein_id AT2G25320.1p  transcript_id AT2G25320.1  protein_id AT2G25320.1p  transcript_id AT2G25320.1  
At2g25330	chr2:010790122	0.0	C/10790122-10791331,10789241-10790007,10789063-10789150,10788946-10788962	AT2G25330.1  CDS  gene_syn T22F11.8, T22F11_8  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25320.1); Has 903 Blast hits to 453 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 157; Fungi - 77; Plants - 581; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT2G25330.1p  transcript_id AT2G25330.1  protein_id AT2G25330.1p  transcript_id AT2G25330.1  
At2g25340	chr2:010793616	0.0	C/10793616-10793832,10793112-10793302,10792854-10793017,10792664-10792751	AT2G25340.1  CDS  gene_syn ATVAMP712, T22F11.7, T22F11_7, VAMP712, VESICLE-ASSOCIATED MEMBRANE PROTEIN 712  gene ATVAMP712  function Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family.  go_process transport|GO:0006810||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_component vacuolar membrane|GO:0005774|15876431|TAS  go_component membrane|GO:0016020||ISS  product ATVAMP712 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 712)  note VESICLE-ASSOCIATED MEMBRANE PROTEIN 712 (ATVAMP712); INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: vacuolar membrane, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: ATVAMP711 (ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 711) (TAIR:AT4G32150.1); Has 1814 Blast hits to 1814 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 807; Fungi - 339; Plants - 335; Viruses - 2; Other Eukaryotes - 331 (source: NCBI BLink).  protein_id AT2G25340.1p  transcript_id AT2G25340.1  protein_id AT2G25340.1p  transcript_id AT2G25340.1  
At2g25344	chr2:010795135	0.0	W/10795135-10795195,10795861-10796039	AT2G25344.1  CDS  gene_syn LCR14, Low-molecular-weight cysteine-rich 14  gene LCR14  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR14 (Low-molecular-weight cysteine-rich 14)  note Low-molecular-weight cysteine-rich 14 (LCR14); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); BEST Arabidopsis thaliana protein match is: LCR5 (Low-molecular-weight cysteine-rich 5) (TAIR:AT2G28355.1); Has 45 Blast hits to 45 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G25344.1p  transcript_id AT2G25344.1  protein_id AT2G25344.1p  transcript_id AT2G25344.1  
At2g25350	chr2:010797599	0.0	W/10797599-10797688,10797860-10797970,10798108-10798206,10798324-10798410,10798590-10798698,10798828-10799588,10799706-10799870,10799991-10800233,10800357-10800542,10800676-10800756	AT2G25350.1  CDS  gene_syn T22F11.4  go_process signal transduction|GO:0007165|15358268|ISS  go_process intracellular signaling cascade|GO:0007242||ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product phox (PX) domain-containing protein  note phox (PX) domain-containing protein; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction, intracellular signaling cascade; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Phox-like (InterPro:IPR001683); BEST Arabidopsis thaliana protein match is: phox (PX) domain-containing protein (TAIR:AT4G32160.1); Has 19818 Blast hits to 12588 proteins in 761 species: Archae - 181; Bacteria - 1370; Metazoa - 11138; Fungi - 1442; Plants - 628; Viruses - 164; Other Eukaryotes - 4895 (source: NCBI BLink).  protein_id AT2G25350.1p  transcript_id AT2G25350.1  protein_id AT2G25350.1p  transcript_id AT2G25350.1  
At2g25355	chr2:010801391	0.0	W/10801391-10801441,10801534-10801608,10801850-10801936,10802133-10802189,10802534-10802626,10802938-10803010,10803130-10803205,10803295-10803385,10803469-10803591	AT2G25355.1  CDS  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  product exonuclease-related  note exonuclease-related; FUNCTIONS IN: RNA binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: S1, RNA binding (InterPro:IPR003029); BEST Arabidopsis thaliana protein match is: RNA binding (TAIR:AT4G32175.1); Has 294 Blast hits to 294 proteins in 141 species: Archae - 16; Bacteria - 0; Metazoa - 101; Fungi - 85; Plants - 32; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT2G25355.1p  transcript_id AT2G25355.1  protein_id AT2G25355.1p  transcript_id AT2G25355.1  
At2g25355	chr2:010801567	0.0	W/10801567-10801608,10801850-10801936,10802133-10802189,10802534-10802626,10802938-10803010,10803130-10803205,10803295-10803385,10803469-10803591	AT2G25355.2  CDS  go_component cellular_component|GO:0005575||ND  product exonuclease-related  note exonuclease-related; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: RNA binding (TAIR:AT4G32175.1); Has 285 Blast hits to 285 proteins in 138 species: Archae - 13; Bacteria - 0; Metazoa - 101; Fungi - 85; Plants - 32; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT2G25355.2p  transcript_id AT2G25355.2  protein_id AT2G25355.2p  transcript_id AT2G25355.2  
At2g25360	chr2:010804249	0.0	W/10804249-10804338,10804505-10805229,10805314-10805483,10805625-10805761	AT2G25360.1  CDS  gene_syn F13B15.2, F13B15_2  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger protein-related  note zinc finger protein-related; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: sperm cell, pollen tube; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger protein-related (TAIR:AT2G25370.1); Has 2051 Blast hits to 2038 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 961; Fungi - 360; Plants - 366; Viruses - 2; Other Eukaryotes - 362 (source: NCBI BLink).  protein_id AT2G25360.1p  transcript_id AT2G25360.1  protein_id AT2G25360.1p  transcript_id AT2G25360.1  
At2g25370	chr2:010806700	0.0	W/10806700-10806918,10807390-10807890,10808506-10809239,10809325-10809495,10809608-10809794	AT2G25370.1  CDS  gene_syn F13B15.3, F13B15_3  go_function zinc ion binding|GO:0008270||IEA  product zinc finger protein-related  note zinc finger protein-related; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867); BEST Arabidopsis thaliana protein match is: zinc finger protein-related (TAIR:AT2G25360.1); Has 1926 Blast hits to 1916 proteins in 154 species: Archae - 0; Bacteria - 2; Metazoa - 898; Fungi - 331; Plants - 362; Viruses - 0; Other Eukaryotes - 333 (source: NCBI BLink).  protein_id AT2G25370.1p  transcript_id AT2G25370.1  protein_id AT2G25370.1p  transcript_id AT2G25370.1  
At2g25380	chr2:010810362	0.0	W/10810362-10812243	AT2G25380.1  pseudogenic_transcript  pseudo  gene_syn F13B15.4, F13B15_4  function pseudogene of zinc finger protein-related  
At2g25390	chr2:010812615	0.0	C/10812615-10813217	AT2G25390.1  pseudogenic_transcript  pseudo  gene_syn F13B15.1  note pseudogene, hypothetical protein  
At2g25400	chr2:010813839	0.0	W/10813839-10813911	AT2G25400.1  tRNA  gene_syn 49202.TRNA-ARG-1, 51099.TRNA-ARG-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: TCT)  transcript_id AT2G25400.1  
At2g25410	chr2:010814470	0.0	W/10814470-10815166,10815481-10815917	AT2G25410.1  CDS  gene_syn F13B15.7  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G46495.1); Has 6033 Blast hits to 6015 proteins in 233 species: Archae - 0; Bacteria - 0; Metazoa - 1855; Fungi - 408; Plants - 2785; Viruses - 40; Other Eukaryotes - 945 (source: NCBI BLink).  protein_id AT2G25410.1p  transcript_id AT2G25410.1  protein_id AT2G25410.1p  transcript_id AT2G25410.1  
At2g25409	chr2:010815485	0.0	C/10815485-10815973	AT2G25409.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G25409.1p  transcript_id AT2G25409.1  protein_id AT2G25409.1p  transcript_id AT2G25409.1  
At2g25420	chr2:010817017	0.0	W/10817017-10817105,10817196-10817375,10817460-10817573,10817659-10817851,10817949-10818013,10818089-10818268,10818444-10818602,10818688-10818880,10819336-10819443,10819552-10819722,10819808-10819930,10820023-10820118,10820192-10820389,10820485-10820660,10820742-10820919	AT2G25420.1  CDS  gene_syn F13B15.8, F13B15_8  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594); BEST Arabidopsis thaliana protein match is: protein binding (TAIR:AT3G15880.2); Has 2557 Blast hits to 2036 proteins in 230 species: Archae - 2; Bacteria - 361; Metazoa - 924; Fungi - 399; Plants - 275; Viruses - 0; Other Eukaryotes - 596 (source: NCBI BLink).  protein_id AT2G25420.1p  transcript_id AT2G25420.1  protein_id AT2G25420.1p  transcript_id AT2G25420.1  
At2g25430	chr2:010822716	0.0	W/10822716-10824677	AT2G25430.1  CDS  gene_syn F13B15.9, F13B15_9  go_component plasma membrane|GO:0005886|17317660|IDA  go_process clathrin coat assembly|GO:0048268||IEA  go_function phospholipid binding|GO:0005543||IEA  go_function phosphatidylinositol binding|GO:0005545||IEA  go_function clathrin binding|GO:0030276||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_function binding|GO:0005488||ISS  product epsin N-terminal homology (ENTH) domain-containing protein  note epsin N-terminal homology (ENTH) domain-containing protein; FUNCTIONS IN: phospholipid binding, clathrin binding, binding, phosphatidylinositol binding; INVOLVED IN: clathrin coat assembly; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942), Clathrin adaptor, phosphoinositide-binding, GAT-like (InterPro:IPR014712); BEST Arabidopsis thaliana protein match is: epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (TAIR:AT4G32285.2); Has 1419 Blast hits to 1078 proteins in 187 species: Archae - 4; Bacteria - 130; Metazoa - 620; Fungi - 114; Plants - 393; Viruses - 2; Other Eukaryotes - 156 (source: NCBI BLink).  protein_id AT2G25430.1p  transcript_id AT2G25430.1  protein_id AT2G25430.1p  transcript_id AT2G25430.1  
At2g25440	chr2:010826735	0.0	W/10826735-10827112,10827240-10827422,10827948-10829402	AT2G25440.1  CDS  gene_syn AtRLP20, F13B15.10, F13B15_10, Receptor Like Protein 20  gene AtRLP20  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  go_function kinase activity|GO:0016301||ISS  product AtRLP20 (Receptor Like Protein 20); kinase/ protein binding  note Receptor Like Protein 20 (AtRLP20); FUNCTIONS IN: protein binding, kinase activity; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP24 (Receptor Like Protein 24); kinase/ protein binding (TAIR:AT2G33020.1); Has 41518 Blast hits to 14004 proteins in 666 species: Archae - 18; Bacteria - 1872; Metazoa - 9669; Fungi - 455; Plants - 26558; Viruses - 4; Other Eukaryotes - 2942 (source: NCBI BLink).  protein_id AT2G25440.1p  transcript_id AT2G25440.1  protein_id AT2G25440.1p  transcript_id AT2G25440.1  
At2g25450	chr2:010831061	0.0	C/10831061-10831563,10830625-10830946,10830286-10830540	AT2G25450.1  CDS  gene_syn F13B15.11, F13B15_11  function encodes a protein whose sequence is similar to ACC oxidase  go_component cellular_component|GO:0005575||ND  go_process regulation of glucosinolate biosynthetic process|GO:0010439|18945935|IMP  go_process glucosinolate biosynthetic process|GO:0019761|18945935|IEP  go_process glucosinolate biosynthetic process|GO:0019761|18945935|IMP  go_function 1-aminocyclopropane-1-carboxylate oxidase activity|GO:0009815|7579161|ISS  product 2-oxoglutarate-dependent dioxygenase, putative  note 2-oxoglutarate-dependent dioxygenase, putative; FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate oxidase activity; INVOLVED IN: regulation of glucosinolate biosynthetic process, glucosinolate biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase, putative (TAIR:AT2G30830.1); Has 5430 Blast hits to 5421 proteins in 657 species: Archae - 0; Bacteria - 676; Metazoa - 86; Fungi - 451; Plants - 3041; Viruses - 0; Other Eukaryotes - 1176 (source: NCBI BLink).  protein_id AT2G25450.1p  transcript_id AT2G25450.1  protein_id AT2G25450.1p  transcript_id AT2G25450.1  
At2g25460	chr2:010835072	0.0	C/10835072-10835374,10834833-10834985,10834316-10834615,10833747-10834241,10833175-10833195	AT2G25460.1  CDS  gene_syn F13B15.12, F13B15_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, root, carpel, stamen; EXPRESSED DURING: M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04860.1); Has 53 Blast hits to 36 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G25460.1p  transcript_id AT2G25460.1  protein_id AT2G25460.1p  transcript_id AT2G25460.1  
At2g25470	chr2:010838420	0.0	W/10838420-10838765,10838861-10839016,10839107-10839175,10839330-10839404,10839528-10839602,10839720-10839966,10840042-10841881	AT2G25470.1  CDS  gene_syn AtRLP21, F13B15.13, F13B15_13, Receptor Like Protein 21  gene AtRLP21  go_component chloroplast|GO:0009507|15028209|IDA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product AtRLP21 (Receptor Like Protein 21); protein binding  note Receptor Like Protein 21 (AtRLP21); FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: chloroplast; EXPRESSED IN: hypocotyl; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210); BEST Arabidopsis thaliana protein match is: AtRLP14 (Receptor Like Protein 14); protein binding (TAIR:AT1G74180.1); Has 77432 Blast hits to 21197 proteins in 847 species: Archae - 42; Bacteria - 5382; Metazoa - 26167; Fungi - 1022; Plants - 38820; Viruses - 27; Other Eukaryotes - 5972 (source: NCBI BLink).  protein_id AT2G25470.1p  transcript_id AT2G25470.1  protein_id AT2G25470.1p  transcript_id AT2G25470.1  
At2g25480	chr2:010843449	0.0	W/10843449-10843601,10843693-10843923,10844021-10844058,10844205-10844270,10844351-10844447,10844525-10844596,10844701-10844811,10844900-10845343	AT2G25480.1  CDS  gene_syn F13B15.14, F13B15_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Targeting for Xklp2 (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32330.2); Has 1787 Blast hits to 1426 proteins in 179 species: Archae - 0; Bacteria - 73; Metazoa - 901; Fungi - 138; Plants - 185; Viruses - 2; Other Eukaryotes - 488 (source: NCBI BLink).  protein_id AT2G25480.1p  transcript_id AT2G25480.1  protein_id AT2G25480.1p  transcript_id AT2G25480.1  
At2g25482	chr2:010845884	0.0	C/10845884-10846348	AT2G25482.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G30247.1); Has 29 Blast hits to 29 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G25482.1p  transcript_id AT2G25482.1  protein_id AT2G25482.1p  transcript_id AT2G25482.1  
At2g25490	chr2:010850251	0.0	C/10850251-10850275,10848018-10849879	AT2G25490.1  CDS  gene_syn EBF1, EIN3-BINDING F BOX PROTEIN 1, F13B15.15, F13B15_15, FBL6  gene EBF1  function Encodes an F-box protein involved in the ubiquitin/proteasome-dependent proteolysis of EIN3.  go_component nucleus|GO:0005634|14675533|IDA  go_component nucleus|GO:0005634|14675533|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|14675532|TAS  go_process response to ethylene stimulus|GO:0009723|14675532|IMP  go_process negative regulation of ethylene mediated signaling pathway|GO:0010105|14675533|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|14675532|IPI  product EBF1 (EIN3-BINDING F BOX PROTEIN 1); protein binding / ubiquitin-protein ligase  note EIN3-BINDING F BOX PROTEIN 1 (EBF1); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: response to ethylene stimulus, negative regulation of ethylene mediated signaling pathway, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: EBF2 (EIN3-BINDING F BOX PROTEIN 2); protein binding (TAIR:AT5G25350.1); Has 9665 Blast hits to 3457 proteins in 200 species: Archae - 0; Bacteria - 407; Metazoa - 4610; Fungi - 1064; Plants - 2305; Viruses - 9; Other Eukaryotes - 1270 (source: NCBI BLink).  protein_id AT2G25490.1p  transcript_id AT2G25490.1  protein_id AT2G25490.1p  transcript_id AT2G25490.1  
At2g25500	chr2:010854652	0.0	C/10854652-10854948	AT2G25500.1  CDS  gene_syn F13B15.16, F13B15_16  go_component cytoplasm|GO:0005737||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Maf-like protein (InterPro:IPR003697); BEST Arabidopsis thaliana protein match is: Maf family protein (TAIR:AT5G66550.1); Has 693 Blast hits to 693 proteins in 244 species: Archae - 0; Bacteria - 474; Metazoa - 0; Fungi - 5; Plants - 50; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).  protein_id AT2G25500.1p  transcript_id AT2G25500.1  protein_id AT2G25500.1p  transcript_id AT2G25500.1  
At2g25510	chr2:010856772	0.0	W/10856772-10857083	AT2G25510.1  CDS  gene_syn F13B15.17, F13B15_17  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G25510.1p  transcript_id AT2G25510.1  protein_id AT2G25510.1p  transcript_id AT2G25510.1  
At2g25520	chr2:010860950	0.0	W/10860950-10861993	AT2G25520.1  CDS  gene_syn F13B15.18, F13B15_18  go_component endomembrane system|GO:0012505||IEA  go_function organic anion transmembrane transporter activity|GO:0008514||ISS  product phosphate translocator-related  note phosphate translocator-related; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: phosphate translocator-related (TAIR:AT4G32390.1); Has 1588 Blast hits to 1588 proteins in 185 species: Archae - 0; Bacteria - 8; Metazoa - 446; Fungi - 283; Plants - 685; Viruses - 0; Other Eukaryotes - 166 (source: NCBI BLink).  protein_id AT2G25520.1p  transcript_id AT2G25520.1  protein_id AT2G25520.1p  transcript_id AT2G25520.1  
At2g25530	chr2:010863059	0.0	W/10863059-10863196,10863266-10863458,10863524-10863660,10863731-10863873,10863963-10864108,10864196-10864275,10864349-10864606,10864866-10864976,10865120-10865242,10865326-10865447,10865528-10865690,10865766-10865893,10866298-10866439,10866514-10866597	AT2G25530.1  CDS  gene_syn F13B15.19, F13B15_19  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ATPase activity|GO:0016887||ISS  product AFG1-like ATPase family protein  note AFG1-like ATPase family protein; FUNCTIONS IN: ATPase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AFG1-like (InterPro:IPR005654); BEST Arabidopsis thaliana protein match is: AFG1-like ATPase family protein (TAIR:AT4G28070.2); Has 2950 Blast hits to 2944 proteins in 679 species: Archae - 0; Bacteria - 1158; Metazoa - 129; Fungi - 132; Plants - 50; Viruses - 0; Other Eukaryotes - 1481 (source: NCBI BLink).  protein_id AT2G25530.1p  transcript_id AT2G25530.1  protein_id AT2G25530.1p  transcript_id AT2G25530.1  
At2g25540	chr2:010872015	0.0	C/10872015-10872077,10871222-10871417,10870954-10871129,10870755-10870845,10870494-10870683,10870102-10870368,10869673-10870018,10869424-10869561,10869199-10869324,10868810-10869022,10868445-10868709,10868169-10868365,10867733-10868083,10867070-10867648	AT2G25540.1  CDS  gene_syn CELLULOSE SYNTHASE 10, CESA10, F13B15.20, F13B15_20  gene CESA10  function cellulose synthase  go_component membrane|GO:0016020||IEA  go_process plant-type cell wall biogenesis|GO:0009832|10938350|TAS  go_process cellulose biosynthetic process|GO:0030244|10938350|TAS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  product CESA10 (CELLULOSE SYNTHASE 10); cellulose synthase/ transferase, transferring glycosyl groups  note CELLULOSE SYNTHASE 10 (CESA10); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: plant-type cell wall biogenesis, cellulose biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: CESA1 (CELLULOSE SYNTHASE 1); cellulose synthase/ transferase, transferring glycosyl groups (TAIR:AT4G32410.1); Has 2055 Blast hits to 1868 proteins in 409 species: Archae - 6; Bacteria - 659; Metazoa - 3; Fungi - 10; Plants - 1320; Viruses - 3; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT2G25540.1p  transcript_id AT2G25540.1  protein_id AT2G25540.1p  transcript_id AT2G25540.1  
At2g25550	chr2:010874913	0.0	W/10874913-10880212	AT2G25550.1  mRNA_TE_gene  pseudo  gene_syn F13B15.21, F13B15_21  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 3.1e-44 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)  
At2g25560	chr2:010881790	0.0	W/10881790-10883760	AT2G25560.1  CDS  gene_syn F13B15.22, F13B15_22  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: heat shock protein binding / unfolded protein binding (TAIR:AT5G53150.1); Has 14210 Blast hits to 14123 proteins in 1877 species: Archae - 99; Bacteria - 4772; Metazoa - 2979; Fungi - 1149; Plants - 1223; Viruses - 13; Other Eukaryotes - 3975 (source: NCBI BLink).  protein_id AT2G25560.1p  transcript_id AT2G25560.1  protein_id AT2G25560.1p  transcript_id AT2G25560.1  
At2g25565	chr2:010884803	0.0	C/10884803-10885295,10884062-10884189	AT2G25565.1  CDS  gene_syn F3N11.20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage; BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G24480.1); Has 13 Blast hits to 13 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G25565.1p  transcript_id AT2G25565.1  protein_id AT2G25565.1p  transcript_id AT2G25565.1  
At2g25570	chr2:010887530	0.0	C/10887530-10887558,10887322-10887378,10887166-10887247,10886811-10886870,10886613-10886720,10886289-10886334,10885881-10886113	AT2G25570.2  CDS  gene_syn F3N11.2, F3N11_2  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); Has 2222 Blast hits to 1322 proteins in 333 species: Archae - 0; Bacteria - 1546; Metazoa - 72; Fungi - 2; Plants - 31; Viruses - 6; Other Eukaryotes - 565 (source: NCBI BLink).  protein_id AT2G25570.2p  transcript_id AT2G25570.2  protein_id AT2G25570.2p  transcript_id AT2G25570.2  
At2g25570	chr2:010887750	0.0	C/10887750-10887842,10887530-10887658,10887322-10887437,10887166-10887247,10886811-10886870,10886613-10886720,10886289-10886334,10885881-10886113	AT2G25570.1  CDS  gene_syn F3N11.2, F3N11_2  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); Has 2327 Blast hits to 1374 proteins in 346 species: Archae - 0; Bacteria - 1594; Metazoa - 121; Fungi - 4; Plants - 31; Viruses - 6; Other Eukaryotes - 571 (source: NCBI BLink).  protein_id AT2G25570.1p  transcript_id AT2G25570.1  protein_id AT2G25570.1p  transcript_id AT2G25570.1  
At2g25570	chr2:010887750	0.0	C/10887750-10887842,10887530-10887658,10887322-10887437,10887166-10887247,10886811-10886870,10886613-10886720,10886289-10886334,10885881-10886113	AT2G25570.3  CDS  gene_syn F3N11.2, F3N11_2  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); Has 2327 Blast hits to 1374 proteins in 346 species: Archae - 0; Bacteria - 1594; Metazoa - 121; Fungi - 4; Plants - 31; Viruses - 6; Other Eukaryotes - 571 (source: NCBI BLink).  protein_id AT2G25570.3p  transcript_id AT2G25570.3  protein_id AT2G25570.3p  transcript_id AT2G25570.3  
At2g25580	chr2:010888102	0.0	W/10888102-10889949	AT2G25580.1  CDS  gene_syn F3N11.3, F3N11_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G32450.1); Has 7881 Blast hits to 3723 proteins in 97 species: Archae - 0; Bacteria - 6; Metazoa - 6; Fungi - 16; Plants - 7829; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT2G25580.1p  transcript_id AT2G25580.1  protein_id AT2G25580.1p  transcript_id AT2G25580.1  
At2g25590	chr2:010891295	0.0	W/10891295-10891696,10891878-10892123,10892263-10892352,10893165-10893216,10893301-10893442,10893559-10893772	AT2G25590.1  CDS  gene_syn F3N11.4, F3N11_4  go_function RNA binding|GO:0003723||IEA  go_process biological_process|GO:0008150||ND  product agenet domain-containing protein  note agenet domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein (TAIR:AT4G32440.2); Has 66 Blast hits to 64 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G25590.1p  transcript_id AT2G25590.1  protein_id AT2G25590.1p  transcript_id AT2G25590.1  
At2g25600	chr2:010894603	0.0	W/10894603-10894844,10894925-10895290,10895371-10895428,10895526-10895843,10895941-10896186,10896272-10896370,10896448-10896484,10896607-10896788,10896877-10897071,10897167-10897242,10897339-10897911,10898095-10898369	AT2G25600.1  CDS  gene_syn AKT6, F3N11.5, F3N11_5, SPIK, Shaker Pollen Inward K+ channel  gene SPIK  function mutant has Impaired pollen-tube growth; member of Shaker K+ channel family, also Stelar K+ outward rectifying channel (SKOR) family  go_component membrane|GO:0016020||IEA  go_process pollen tube growth|GO:0009860|11825875|IDA  go_function inward rectifier potassium channel activity|GO:0005242|11825875|IMP  go_function inward rectifier potassium channel activity|GO:0005242||ISS  go_function potassium channel activity|GO:0005267|11825875|IDA  go_function cyclic nucleotide binding|GO:0030551||ISS  product SPIK (Shaker Pollen Inward K+ channel); cyclic nucleotide binding / inward rectifier potassium channel/ potassium channel  note Shaker Pollen Inward K+ channel (SPIK); FUNCTIONS IN: cyclic nucleotide binding, inward rectifier potassium channel activity, potassium channel activity; INVOLVED IN: pollen tube growth; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Ion transport (InterPro:IPR005821), RmlC-like jelly roll fold (InterPro:IPR014710), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: AKT5; cyclic nucleotide binding / inward rectifier potassium channel (TAIR:AT4G32500.1); Has 68505 Blast hits to 27172 proteins in 1025 species: Archae - 76; Bacteria - 5017; Metazoa - 35480; Fungi - 5201; Plants - 2116; Viruses - 1168; Other Eukaryotes - 19447 (source: NCBI BLink).  protein_id AT2G25600.1p  transcript_id AT2G25600.1  protein_id AT2G25600.1p  transcript_id AT2G25600.1  
At2g25605	chr2:010899541	0.0	W/10899541-10899683,10899952-10899994,10900097-10900189,10900281-10900343,10900445-10900540,10900615-10900692,10900789-10900875	AT2G25605.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 54 Blast hits to 54 proteins in 10 species: Archae - 2; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT2G25605.1p  transcript_id AT2G25605.1  protein_id AT2G25605.1p  transcript_id AT2G25605.1  
At2g25610	chr2:010902373	0.0	C/10902373-10902494,10902208-10902285,10901849-10902019,10901585-10901750	AT2G25610.1  CDS  gene_syn F3N11.6, F3N11_6  go_component vacuole|GO:0005773|15215502|IDA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_function ATPase activity|GO:0016887||ISS  product H+-transporting two-sector ATPase, C subunit family protein  note H+-transporting two-sector ATPase, C subunit family protein; FUNCTIONS IN: ATPase activity; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F0/V0 complex, subunit C (InterPro:IPR002379), ATPase, V0 complex, proteolipid subunit C (InterPro:IPR000245); BEST Arabidopsis thaliana protein match is: vacuolar ATP synthase, putative / V-ATPase, putative (TAIR:AT4G32530.1); Has 1596 Blast hits to 1304 proteins in 284 species: Archae - 70; Bacteria - 89; Metazoa - 650; Fungi - 323; Plants - 223; Viruses - 0; Other Eukaryotes - 241 (source: NCBI BLink).  protein_id AT2G25610.1p  transcript_id AT2G25610.1  protein_id AT2G25610.1p  transcript_id AT2G25610.1  
At2g25620	chr2:010904796	0.0	C/10904796-10904978,10904373-10904579,10904050-10904261,10903154-10903730	AT2G25620.1  CDS  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT2G33700.1); Has 4630 Blast hits to 4502 proteins in 388 species: Archae - 5; Bacteria - 334; Metazoa - 1478; Fungi - 496; Plants - 1297; Viruses - 7; Other Eukaryotes - 1013 (source: NCBI BLink).  protein_id AT2G25620.1p  transcript_id AT2G25620.1  protein_id AT2G25620.1p  transcript_id AT2G25620.1  
At2g25625	chr2:010906562	0.0	W/10906562-10906662,10906742-10907099	AT2G25625.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; Has 15 Blast hits to 15 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G25625.1p  transcript_id AT2G25625.1  protein_id AT2G25625.1p  transcript_id AT2G25625.1  
At2g25625	chr2:010906562	0.0	W/10906562-10906662,10906745-10907099	AT2G25625.2  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; Has 15 Blast hits to 15 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G25625.2p  transcript_id AT2G25625.2  protein_id AT2G25625.2p  transcript_id AT2G25625.2  
At2g25630	chr2:010908360	0.0	W/10908360-10909481,10909533-10909880	AT2G25630.1  CDS  gene_syn BETA GLUCOSIDASE 14, BGLU14, F3N11.8, F3N11_8  gene BGLU14  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU14 (BETA GLUCOSIDASE 14); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 14 (BGLU14); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plant-type cell wall; EXPRESSED IN: stem, male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU13 (BETA GLUCOSIDASE 13); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT5G44640.1); Has 5781 Blast hits to 5535 proteins in 797 species: Archae - 100; Bacteria - 3130; Metazoa - 606; Fungi - 136; Plants - 851; Viruses - 0; Other Eukaryotes - 958 (source: NCBI BLink).  protein_id AT2G25630.1p  transcript_id AT2G25630.1  protein_id AT2G25630.1p  transcript_id AT2G25630.1  
At2g25640	chr2:010910836	0.0	W/10910836-10912691,10912925-10913045,10913421-10913480,10913708-10913908	AT2G25640.1  CDS  gene_syn F3N11.9, F3N11_9  go_component nucleus|GO:0005634||IEA  go_process transcription|GO:0006350||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue C-terminal (InterPro:IPR012921), Transcription elongation factor S-IIM (InterPro:IPR017890), Transcription elongation factor S-II, central region (InterPro:IPR003618); BEST Arabidopsis thaliana protein match is: transcription elongation factor-related (TAIR:AT5G25520.2); Has 814 Blast hits to 759 proteins in 156 species: Archae - 0; Bacteria - 92; Metazoa - 430; Fungi - 156; Plants - 80; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT2G25640.1p  transcript_id AT2G25640.1  protein_id AT2G25640.1p  transcript_id AT2G25640.1  
At2g25650	chr2:010914765	0.0	W/10914765-10915001,10915083-10916006	AT2G25650.1  CDS  gene_syn F3N11.10, F3N11_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transcription regulator activity|GO:0030528|12535344|TAS  product DNA-binding storekeeper protein-related  note DNA-binding storekeeper protein-related; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related (TAIR:AT4G00270.1); Has 3761 Blast hits to 2494 proteins in 266 species: Archae - 1; Bacteria - 202; Metazoa - 1191; Fungi - 268; Plants - 267; Viruses - 100; Other Eukaryotes - 1732 (source: NCBI BLink).  protein_id AT2G25650.1p  transcript_id AT2G25650.1  protein_id AT2G25650.1p  transcript_id AT2G25650.1  
At2g25660	chr2:010925493	0.0	C/10925493-10927390,10925046-10925244,10924458-10924562,10924084-10924224,10923868-10923930,10923497-10923727,10923323-10923406,10922522-10922679,10921925-10922429,10921407-10921577,10921244-10921303,10920778-10920900,10920566-10920598,10920184-10920459,10919948-10920013,10919655-10919786,10918638-10919444,10918243-10918523,10917726-10917982,10917378-10917616,10917073-10917264,10916709-10916981,10916456-10916602	AT2G25660.1  CDS  gene_syn F3N11.11, F3N11_11, emb2410, embryo defective 2410  gene emb2410  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product emb2410 (embryo defective 2410)  note embryo defective 2410 (emb2410); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF490 (InterPro:IPR007452); Has 317 Blast hits to 261 proteins in 75 species: Archae - 0; Bacteria - 208; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT2G25660.1p  transcript_id AT2G25660.1  protein_id AT2G25660.1p  transcript_id AT2G25660.1  
At2g25670	chr2:010930299	0.0	C/10930299-10930619,10929654-10929909,10929062-10929441	AT2G25670.1  CDS  gene_syn F3N11.12, F3N11_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32610.1); Has 39716 Blast hits to 23014 proteins in 1226 species: Archae - 64; Bacteria - 4437; Metazoa - 16033; Fungi - 4681; Plants - 1370; Viruses - 266; Other Eukaryotes - 12865 (source: NCBI BLink).  protein_id AT2G25670.1p  transcript_id AT2G25670.1  protein_id AT2G25670.1p  transcript_id AT2G25670.1  
At2g25670	chr2:010930299	0.0	C/10930299-10930619,10929654-10929909,10929062-10929441	AT2G25670.2  CDS  gene_syn F3N11.12, F3N11_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32610.1); Has 39716 Blast hits to 23014 proteins in 1226 species: Archae - 64; Bacteria - 4437; Metazoa - 16033; Fungi - 4681; Plants - 1370; Viruses - 266; Other Eukaryotes - 12865 (source: NCBI BLink).  protein_id AT2G25670.2p  transcript_id AT2G25670.2  protein_id AT2G25670.2p  transcript_id AT2G25670.2  
At2g25680	chr2:010933167	0.0	C/10933167-10934537	AT2G25680.1  CDS  gene_syn F3N11.13, F3N11_13, MOT1, molybdate transporter 1  gene MOT1  function Encodes a high-affinity molybdate transporter. Mutant has reduced concentrations of molybdate in roots and shoots, and reduced shoot and root length when growing on Mo-limited medium.  go_component vacuole|GO:0005773|15539469|IDA  go_component mitochondrion|GO:0005739|18454190|IDA  go_component plasma membrane|GO:0005886|18454190|IDA  go_component endomembrane system|GO:0012505|18454190|IDA  go_process molybdate ion transport|GO:0015689|18003916|IMP  go_process molybdate ion transport|GO:0015689|18454190|IDA  go_function molybdate ion transmembrane transporter activity|GO:0015098|18003916|IDA  go_function molybdate ion transmembrane transporter activity|GO:0015098|18454190|IDA  go_function sulfate transmembrane transporter activity|GO:0015116||ISS  product MOT1 (molybdate transporter 1); molybdate ion transmembrane transporter/ sulfate transmembrane transporter  note molybdate transporter 1 (MOT1); FUNCTIONS IN: molybdate ion transmembrane transporter activity, sulfate transmembrane transporter activity; INVOLVED IN: molybdate ion transport; LOCATED IN: mitochondrion, endomembrane system, plasma membrane, vacuole; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sulphate transporter (InterPro:IPR011547); BEST Arabidopsis thaliana protein match is: sulfate transmembrane transporter (TAIR:AT1G80310.1); Has 478 Blast hits to 471 proteins in 158 species: Archae - 16; Bacteria - 290; Metazoa - 1; Fungi - 34; Plants - 43; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).  protein_id AT2G25680.1p  transcript_id AT2G25680.1  protein_id AT2G25680.1p  transcript_id AT2G25680.1  
At2g25685	chr2:010938015	0.0	C/10938015-10938081,10937678-10937907	AT2G25685.1  CDS  gene_syn SCR-Like 17, SCRL17  gene SCRL17  function Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).  go_component endomembrane system|GO:0012505||IEA  product SCRL17 (SCR-Like 17)  note SCR-Like 17 (SCRL17); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: SCRL18 (SCR-Like 18) (TAIR:AT2G14282.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G25685.1p  transcript_id AT2G25685.1  protein_id AT2G25685.1p  transcript_id AT2G25685.1  
At2g25687	chr2:010939037	0.0	W/10939037-10939418	AT2G25687.1  pseudogenic_transcript  pseudo  function Encodes a defensin-like (DEFL) family protein.  
At2g25690	chr2:010940787	0.0	C/10940787-10941649,10940530-10940641	AT2G25690.1  CDS  gene_syn F3N11.14, F3N11_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product senescence-associated protein-related  note senescence-associated protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: senescence-associated protein-related (TAIR:AT5G11460.1); Has 277 Blast hits to 277 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 277; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G25690.1p  transcript_id AT2G25690.1  protein_id AT2G25690.1p  transcript_id AT2G25690.1  
At2g25690	chr2:010940787	0.0	C/10940787-10941649,10940530-10940641	AT2G25690.2  CDS  gene_syn F3N11.14, F3N11_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product senescence-associated protein-related  note senescence-associated protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: senescence-associated protein-related (TAIR:AT5G11460.1); Has 277 Blast hits to 277 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 277; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G25690.2p  transcript_id AT2G25690.2  protein_id AT2G25690.2p  transcript_id AT2G25690.2  
At2g25697	chr2:010947096	0.0	W/10947096-10947245	AT2G25697.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G25697.1p  transcript_id AT2G25697.1  protein_id AT2G25697.1p  transcript_id AT2G25697.1  
At2g25700	chr2:010949234	0.0	C/10949234-10949551,10948914-10949087	AT2G25700.1  CDS  gene_syn ARABIDOPSIS SKP1-LIKE 3, ASK3, F3N11.15, F3N11_15  gene ASK3  function E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 (At3), putative, E3 ubiquitin ligase; similar to fimbriata-associated protein fap1 GI:2673868 from (Antirrhinum majus. Interacts with F-box proteins.  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_component cellular_component|GO:0005575||ND  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|14749489|IPI  product ASK3 (ARABIDOPSIS SKP1-LIKE 3); protein binding / ubiquitin-protein ligase  note ARABIDOPSIS SKP1-LIKE 3 (ASK3); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sepal, pedicel, seed coat, valve; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: ASK4 (ARABIDOPSIS SKP1-LIKE 4); protein binding / ubiquitin-protein ligase (TAIR:AT1G20140.1); Has 1085 Blast hits to 1083 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 492; Fungi - 109; Plants - 354; Viruses - 11; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT2G25700.1p  transcript_id AT2G25700.1  protein_id AT2G25700.1p  transcript_id AT2G25700.1  
At2g25710	chr2:010952719	0.0	W/10952719-10952830,10952950-10953223,10953315-10953376,10953478-10953626,10953714-10953834,10953930-10954085,10954225-10954270,10954607-10954673,10954854-10954930,10955022-10955061	AT2G25710.1  CDS  gene_syn F3N11.16, F3N11_16, HCS1, HOLOCARBOXYLASE SYNTHASE  gene HCS1  function Encodes holocarboxylase synthase.  go_process protein modification process|GO:0006464||IEA  go_function catalytic activity|GO:0003824||IEA  go_function biotin-[acetyl-CoA-carboxylase] ligase activity|GO:0004077||IEA  go_process protein modification process|GO:0006464||ISS  go_function catalytic activity|GO:0003824||ISS  product HCS1 (HOLOCARBOXYLASE SYNTHASE); biotin-[acetyl-CoA-carboxylase] ligase/ catalytic  note HOLOCARBOXYLASE SYNTHASE (HCS1); FUNCTIONS IN: biotin-[acetyl-CoA-carboxylase] ligase activity, catalytic activity; INVOLVED IN: protein modification process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Biotin protein ligase, C-terminal (InterPro:IPR003142), Biotin/lipoate A/B protein ligase (InterPro:IPR004143), Biotin--acetyl-CoA-carboxylase ligase (InterPro:IPR004408); BEST Arabidopsis thaliana protein match is: HCS2 (holocarboxylase synthetase 2); biotin-[acetyl-CoA-carboxylase] ligase/ catalytic (TAIR:AT1G37150.2); Has 3898 Blast hits to 3896 proteins in 1215 species: Archae - 157; Bacteria - 2065; Metazoa - 106; Fungi - 88; Plants - 32; Viruses - 0; Other Eukaryotes - 1450 (source: NCBI BLink).  protein_id AT2G25710.1p  transcript_id AT2G25710.1  protein_id AT2G25710.1p  transcript_id AT2G25710.1  
At2g25710	chr2:010952719	0.0	W/10952719-10952830,10952950-10953223,10953315-10953376,10953478-10953626,10953714-10953834,10953930-10954085,10954225-10954270,10954607-10954673,10954854-10954930,10955022-10955061	AT2G25710.2  CDS  gene_syn F3N11.16, F3N11_16, HCS1, HOLOCARBOXYLASE SYNTHASE  gene HCS1  function Encodes holocarboxylase synthase.  go_process protein modification process|GO:0006464||IEA  go_function catalytic activity|GO:0003824||IEA  go_function biotin-[acetyl-CoA-carboxylase] ligase activity|GO:0004077||IEA  go_process protein modification process|GO:0006464||ISS  go_function catalytic activity|GO:0003824||ISS  product HCS1 (HOLOCARBOXYLASE SYNTHASE); biotin-[acetyl-CoA-carboxylase] ligase/ catalytic  note HOLOCARBOXYLASE SYNTHASE (HCS1); FUNCTIONS IN: biotin-[acetyl-CoA-carboxylase] ligase activity, catalytic activity; INVOLVED IN: protein modification process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Biotin protein ligase, C-terminal (InterPro:IPR003142), Biotin/lipoate A/B protein ligase (InterPro:IPR004143), Biotin--acetyl-CoA-carboxylase ligase (InterPro:IPR004408); BEST Arabidopsis thaliana protein match is: HCS2 (holocarboxylase synthetase 2); biotin-[acetyl-CoA-carboxylase] ligase/ catalytic (TAIR:AT1G37150.2); Has 3898 Blast hits to 3896 proteins in 1215 species: Archae - 157; Bacteria - 2065; Metazoa - 106; Fungi - 88; Plants - 32; Viruses - 0; Other Eukaryotes - 1450 (source: NCBI BLink).  protein_id AT2G25710.2p  transcript_id AT2G25710.2  protein_id AT2G25710.2p  transcript_id AT2G25710.2  
At2g25720	chr2:010955664	0.0	C/10955664-10956017	AT2G25720.1  CDS  gene_syn F3N11.17, F3N11_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 20 Blast hits to 20 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G25720.1p  transcript_id AT2G25720.1  protein_id AT2G25720.1p  transcript_id AT2G25720.1  
At2g25730	chr2:010971903	0.0	C/10971903-10972729,10971604-10971748,10970915-10971193,10970614-10970781,10970309-10970476,10969306-10969400,10968904-10969078,10968245-10968666,10967581-10967704,10967180-10967275,10966438-10966593,10965897-10966050,10965421-10965767,10964608-10965068,10964185-10964508,10963846-10964061,10962967-10963420,10962677-10962874,10961982-10962470,10961746-10961907,10961262-10961594,10961086-10961168,10960871-10960975,10960330-10960558,10959756-10960121,10959053-10959154,10958305-10958481,10958118-10958206,10957657-10957739,10957464-10957579,10957120-10957205,10956751-10956916	AT2G25730.1  CDS  gene_syn F3N11.1, F3N11_1  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 110 Blast hits to 107 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT2G25730.1p  transcript_id AT2G25730.1  protein_id AT2G25730.1p  transcript_id AT2G25730.1  
At2g25735	chr2:010975345	0.0	C/10975345-10975704	AT2G25735.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; Has 10 Blast hits to 10 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G25735.1p  transcript_id AT2G25735.1  protein_id AT2G25735.1p  transcript_id AT2G25735.1  
At2g25737	chr2:010977174	0.0	W/10977174-10977389,10977535-10977694,10977770-10977970,10978059-10978123,10978259-10978286,10978399-10978478,10978559-10978645,10978736-10978786,10978868-10979089,10979169-10979262,10979353-10979493,10979592-10979677	AT2G25737.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system, integral to membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF81 (InterPro:IPR002781); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36630.1); Has 2380 Blast hits to 2096 proteins in 437 species: Archae - 110; Bacteria - 1068; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 1111 (source: NCBI BLink).  protein_id AT2G25737.1p  transcript_id AT2G25737.1  protein_id AT2G25737.1p  transcript_id AT2G25737.1  
At2g25740	chr2:010980175	0.0	W/10980175-10980344,10980621-10980688,10980782-10980859,10981116-10981228,10981334-10981393,10981833-10981934,10982051-10982597,10982678-10982883,10982973-10983136,10983497-10983632	AT2G25740.1  CDS  gene_syn F3N11.21  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process ATP-dependent proteolysis|GO:0006510||IEA  go_function ATP-dependent peptidase activity|GO:0004176||IEA  go_component cellular_component|GO:0005575||ND  go_function ATP-dependent peptidase activity|GO:0004176||ISS  product ATP-dependent protease La (LON) domain-containing protein  note ATP-dependent protease La (LON) domain-containing protein; FUNCTIONS IN: ATP-dependent peptidase activity; INVOLVED IN: N-terminal protein myristoylation, ATP-dependent proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, lon N-terminal (InterPro:IPR003111); Has 1734 Blast hits to 1664 proteins in 449 species: Archae - 0; Bacteria - 806; Metazoa - 238; Fungi - 6; Plants - 56; Viruses - 0; Other Eukaryotes - 628 (source: NCBI BLink).  protein_id AT2G25740.1p  transcript_id AT2G25740.1  protein_id AT2G25740.1p  transcript_id AT2G25740.1  
At2g25760	chr2:010988359	0.0	C/10988359-10988652,10988049-10988180,10987889-10987962,10987706-10987775,10987575-10987630,10987353-10987424,10987173-10987267,10987029-10987095,10986785-10986929,10986505-10986717,10986268-10986407,10986011-10986185,10985805-10985895,10985560-10985717,10985269-10985457,10985118-10985177	AT2G25760.2  CDS  gene_syn AT2G25750, F17H15.21, F17H15_21  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G13670.1); Has 12255 Blast hits to 12191 proteins in 848 species: Archae - 15; Bacteria - 3557; Metazoa - 4064; Fungi - 943; Plants - 1213; Viruses - 207; Other Eukaryotes - 2256 (source: NCBI BLink).  protein_id AT2G25760.2p  transcript_id AT2G25760.2  protein_id AT2G25760.2p  transcript_id AT2G25760.2  
At2g25760	chr2:010988359	0.0	C/10988359-10988652,10988049-10988180,10987889-10987962,10987706-10987775,10987575-10987630,10987353-10987424,10987173-10987267,10987029-10987095,10986800-10986929,10986505-10986723,10986268-10986407,10986011-10986185,10985805-10985895,10985560-10985717,10985269-10985457,10985118-10985177	AT2G25760.1  CDS  gene_syn AT2G25750, F17H15.21, F17H15_21  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G13670.1); Has 12512 Blast hits to 12448 proteins in 856 species: Archae - 14; Bacteria - 3584; Metazoa - 4218; Fungi - 955; Plants - 1268; Viruses - 210; Other Eukaryotes - 2263 (source: NCBI BLink).  protein_id AT2G25760.1p  transcript_id AT2G25760.1  protein_id AT2G25760.1p  transcript_id AT2G25760.1  
At2g25770	chr2:010992987	0.0	W/10992987-10993490	AT2G25770.1  CDS  gene_syn F17H15.20, F17H15_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32870.1); Has 90 Blast hits to 90 proteins in 28 species: Archae - 0; Bacteria - 25; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G25770.1p  transcript_id AT2G25770.1  protein_id AT2G25770.1p  transcript_id AT2G25770.1  
At2g25770	chr2:010992987	0.0	W/10992987-10993490	AT2G25770.2  CDS  gene_syn F17H15.20, F17H15_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32870.1); Has 90 Blast hits to 90 proteins in 28 species: Archae - 0; Bacteria - 25; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G25770.2p  transcript_id AT2G25770.2  protein_id AT2G25770.2p  transcript_id AT2G25770.2  
At2g25780	chr2:010995169	0.0	W/10995169-10995171,10995465-10995923	AT2G25780.1  CDS  gene_syn F17H15.19, F17H15_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1677, plant (InterPro:IPR012876); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79770.1); Has 130 Blast hits to 129 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 130; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G25780.1p  transcript_id AT2G25780.1  protein_id AT2G25780.1p  transcript_id AT2G25780.1  
At2g25790	chr2:011000631	0.0	W/11000631-11003142,11003661-11004031	AT2G25790.1  CDS  gene_syn F17H15.18, F17H15_18  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT4G28650.1); Has 99014 Blast hits to 37814 proteins in 1242 species: Archae - 50; Bacteria - 8022; Metazoa - 33960; Fungi - 1313; Plants - 47209; Viruses - 19; Other Eukaryotes - 8441 (source: NCBI BLink).  protein_id AT2G25790.1p  transcript_id AT2G25790.1  protein_id AT2G25790.1p  transcript_id AT2G25790.1  
At2g25800	chr2:011009207	0.0	C/11009207-11009728,11008025-11008888,11007459-11007914,11007170-11007362,11006138-11007066	AT2G25800.1  CDS  gene_syn F17H15.17, F17H15_17  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Munc13 homology 1 (InterPro:IPR014770), Protein of unknown function DUF810 (InterPro:IPR008528), Munc13 homology 2 (InterPro:IPR014772); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20010.2); Has 242 Blast hits to 156 proteins in 35 species: Archae - 0; Bacteria - 8; Metazoa - 36; Fungi - 18; Plants - 94; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT2G25800.1p  transcript_id AT2G25800.1  protein_id AT2G25800.1p  transcript_id AT2G25800.1  
At2g25810	chr2:011012658	0.0	W/11012658-11012784,11012893-11013131,11013523-11013906	AT2G25810.1  CDS  gene_syn F17H15.16, F17H15_16, TIP4;1, tonoplast intrinsic protein 4;1  gene TIP4;1  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_function water channel activity|GO:0015250||ISS  product TIP4;1 (tonoplast intrinsic protein 4;1); water channel  note tonoplast intrinsic protein 4;1 (TIP4;1); FUNCTIONS IN: water channel activity; INVOLVED IN: transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN); water channel (TAIR:AT2G36830.1); Has 6492 Blast hits to 6478 proteins in 1243 species: Archae - 59; Bacteria - 2501; Metazoa - 1276; Fungi - 254; Plants - 1459; Viruses - 0; Other Eukaryotes - 943 (source: NCBI BLink).  protein_id AT2G25810.1p  transcript_id AT2G25810.1  protein_id AT2G25810.1p  transcript_id AT2G25810.1  
At2g25820	chr2:011014986	0.0	W/11014986-11015663	AT2G25820.1  CDS  gene_syn F17H15.15, F17H15_15  function encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: sepal, root, stamen, seed; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor TINY, putative (TAIR:AT4G32800.1); Has 3818 Blast hits to 3722 proteins in 214 species: Archae - 0; Bacteria - 5; Metazoa - 16; Fungi - 4; Plants - 3776; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT2G25820.1p  transcript_id AT2G25820.1  protein_id AT2G25820.1p  transcript_id AT2G25820.1  
At2g25830	chr2:011021381	0.0	C/11021381-11021665,11020851-11020912,11020523-11020679,11019960-11020237,11019485-11019605,11019091-11019183	AT2G25830.1  CDS  gene_syn F17H15.14, F17H15_14  go_component chloroplast|GO:0009507|18431481|IDA  product YebC-related  note YebC-related; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF28 (InterPro:IPR002876), Integrase, N-terminal zinc-binding domain-like (InterPro:IPR017856); Has 5804 Blast hits to 5804 proteins in 1592 species: Archae - 0; Bacteria - 3381; Metazoa - 59; Fungi - 77; Plants - 19; Viruses - 0; Other Eukaryotes - 2268 (source: NCBI BLink).  protein_id AT2G25830.1p  transcript_id AT2G25830.1  protein_id AT2G25830.1p  transcript_id AT2G25830.1  
At2g25840	chr2:011021924	0.0	W/11021924-11022114,11022202-11022289,11022583-11022624,11022707-11022919,11023119-11023190,11023414-11023526,11023675-11023696,11023784-11023849,11024236-11024292,11024379-11024425,11024562-11024643,11024767-11024856,11025015-11025158	AT2G25840.1  CDS  gene_syn F17H15.13, F17H15_13, OVA4, ovule abortion 4  gene OVA4  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function tryptophan-tRNA ligase activity|GO:0004830||IEA  go_function ATP binding|GO:0005524||IEA  go_component mitochondrion|GO:0005739|16251277|IDA  go_component chloroplast|GO:0009507|16251277|IDA  go_process tRNA aminoacylation for protein translation|GO:0006418||ISS  go_process ovule development|GO:0048481|16297076|IMP  go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS  go_function ATP binding|GO:0005524||ISS  product OVA4 (ovule abortion 4); ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / tryptophan-tRNA ligase  note ovule abortion 4 (OVA4); FUNCTIONS IN: nucleotide binding, aminoacyl-tRNA ligase activity, tryptophan-tRNA ligase activity, ATP binding; INVOLVED IN: N-terminal protein myristoylation, ovule development, tRNA aminoacylation for protein translation; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Tryptophanyl-tRNA synthetase, class Ib (InterPro:IPR002306), Aminoacyl-tRNA synthetase, class Ib (InterPro:IPR002305); Has 6398 Blast hits to 6390 proteins in 1518 species: Archae - 61; Bacteria - 2910; Metazoa - 123; Fungi - 85; Plants - 23; Viruses - 0; Other Eukaryotes - 3196 (source: NCBI BLink).  protein_id AT2G25840.1p  transcript_id AT2G25840.1  protein_id AT2G25840.1p  transcript_id AT2G25840.1  
At2g25840	chr2:011021924	0.0	W/11021924-11022114,11022202-11022289,11022583-11022624,11022707-11022919,11023119-11023190,11023414-11023538,11023675-11023696,11023784-11023849,11024236-11024292,11024379-11024425,11024562-11024643,11024767-11024856,11025015-11025158	AT2G25840.2  CDS  gene_syn F17H15.13, F17H15_13, OVA4, ovule abortion 4  gene OVA4  go_component chloroplast|GO:0009507|18431481|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function tryptophan-tRNA ligase activity|GO:0004830||IEA  go_function ATP binding|GO:0005524||IEA  go_component mitochondrion|GO:0005739|16251277|IDA  go_component chloroplast|GO:0009507|16251277|IDA  go_process tRNA aminoacylation for protein translation|GO:0006418||ISS  go_process ovule development|GO:0048481|16297076|IMP  go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS  go_function ATP binding|GO:0005524||ISS  product OVA4 (ovule abortion 4); ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / tryptophan-tRNA ligase  note ovule abortion 4 (OVA4); FUNCTIONS IN: tryptophan-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: ovule development, tRNA aminoacylation for protein translation; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Tryptophanyl-tRNA synthetase, class Ib (InterPro:IPR002306), Aminoacyl-tRNA synthetase, class Ib (InterPro:IPR002305); Has 6388 Blast hits to 6380 proteins in 1519 species: Archae - 60; Bacteria - 2910; Metazoa - 123; Fungi - 83; Plants - 23; Viruses - 0; Other Eukaryotes - 3189 (source: NCBI BLink).  protein_id AT2G25840.2p  transcript_id AT2G25840.2  protein_id AT2G25840.2p  transcript_id AT2G25840.2  
At2g25840	chr2:011021924	0.0	W/11021924-11022114,11022202-11022289,11022583-11022624,11022743-11022919,11023119-11023190,11023414-11023526,11023675-11023696,11023784-11023849,11024236-11024292,11024379-11024425,11024562-11024643,11024767-11024856,11025015-11025158	AT2G25840.3  CDS  gene_syn F17H15.13, F17H15_13, OVA4, ovule abortion 4  gene OVA4  go_component chloroplast|GO:0009507|18431481|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function tryptophan-tRNA ligase activity|GO:0004830||IEA  go_function ATP binding|GO:0005524||IEA  go_component mitochondrion|GO:0005739|16251277|IDA  go_component chloroplast|GO:0009507|16251277|IDA  go_process tRNA aminoacylation for protein translation|GO:0006418||ISS  go_process ovule development|GO:0048481|16297076|IMP  go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS  go_function ATP binding|GO:0005524||ISS  product OVA4 (ovule abortion 4); ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / tryptophan-tRNA ligase  note ovule abortion 4 (OVA4); FUNCTIONS IN: aminoacyl-tRNA ligase activity, tryptophan-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: ovule development, tRNA aminoacylation for protein translation; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Tryptophanyl-tRNA synthetase, class Ib (InterPro:IPR002306), Aminoacyl-tRNA synthetase, class Ib (InterPro:IPR002305); Has 6343 Blast hits to 6336 proteins in 1508 species: Archae - 34; Bacteria - 2908; Metazoa - 121; Fungi - 83; Plants - 24; Viruses - 0; Other Eukaryotes - 3173 (source: NCBI BLink).  protein_id AT2G25840.3p  transcript_id AT2G25840.3  protein_id AT2G25840.3p  transcript_id AT2G25840.3  
At2g25850	chr2:011030300	0.0	C/11030300-11030440,11030126-11030203,11029643-11029750,11029386-11029448,11029149-11029310,11028697-11028810,11028553-11028615,11028140-11028469,11027897-11028061,11026799-11027761,11026620-11026715,11026123-11026242	AT2G25850.2  CDS  gene_syn F17H15.12, F17H15_12  go_component nucleus|GO:0005634|15297145|IDA  go_process RNA polyadenylation|GO:0043631|15297145|IDA  go_function protein binding|GO:0005515|15297145|IPI  go_function nucleotidyltransferase activity|GO:0016779||ISS  product nucleotidyltransferase family protein  note nucleotidyltransferase family protein; FUNCTIONS IN: protein binding, nucleotidyltransferase activity; INVOLVED IN: RNA polyadenylation; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Poly(A) polymerase, central region (InterPro:IPR007012), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Nucleotidyltransferase (InterPro:IPR002934), Poly(A) polymerase, RNA-binding region (InterPro:IPR007010); BEST Arabidopsis thaliana protein match is: nPAP (NUCLEAR POLY(A) POLYMERASE); nucleotidyltransferase/ protein binding (TAIR:AT4G32850.10); Has 588 Blast hits to 588 proteins in 160 species: Archae - 0; Bacteria - 9; Metazoa - 233; Fungi - 135; Plants - 107; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT2G25850.2p  transcript_id AT2G25850.2  protein_id AT2G25850.2p  transcript_id AT2G25850.2  
At2g25850	chr2:011030300	0.0	C/11030300-11030440,11030126-11030203,11029643-11029750,11029386-11029448,11029149-11029310,11028697-11028810,11028553-11028615,11028140-11028469,11027897-11028061,11026799-11027761,11026620-11026715,11026196-11026242,11026048-11026078	AT2G25850.3  CDS  gene_syn F17H15.12, F17H15_12  go_component nucleus|GO:0005634|15297145|IDA  go_process RNA polyadenylation|GO:0043631|15297145|IDA  go_function protein binding|GO:0005515|15297145|IPI  go_function nucleotidyltransferase activity|GO:0016779||ISS  product nucleotidyltransferase family protein  note nucleotidyltransferase family protein; FUNCTIONS IN: protein binding, nucleotidyltransferase activity; INVOLVED IN: RNA polyadenylation; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Poly(A) polymerase, central region (InterPro:IPR007012), Nucleotidyltransferase (InterPro:IPR002934), Poly(A) polymerase, RNA-binding region (InterPro:IPR007010); BEST Arabidopsis thaliana protein match is: nPAP (NUCLEAR POLY(A) POLYMERASE); nucleotidyltransferase/ protein binding (TAIR:AT4G32850.6); Has 588 Blast hits to 588 proteins in 160 species: Archae - 0; Bacteria - 9; Metazoa - 233; Fungi - 135; Plants - 107; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT2G25850.3p  transcript_id AT2G25850.3  protein_id AT2G25850.3p  transcript_id AT2G25850.3  
At2g25850	chr2:011030300	0.0	C/11030300-11030440,11030126-11030203,11029643-11029750,11029386-11029448,11029149-11029310,11028697-11028810,11028553-11028615,11028140-11028469,11027897-11028061,11026799-11027761,11026620-11026715,11026196-11026242,11026048-11026081	AT2G25850.1  CDS  gene_syn F17H15.12, F17H15_12  go_component nucleus|GO:0005634|15297145|IDA  go_process RNA polyadenylation|GO:0043631|15297145|IDA  go_function protein binding|GO:0005515|15297145|IPI  go_function nucleotidyltransferase activity|GO:0016779||ISS  product nucleotidyltransferase family protein  note nucleotidyltransferase family protein; FUNCTIONS IN: protein binding, nucleotidyltransferase activity; INVOLVED IN: RNA polyadenylation; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Poly(A) polymerase, central region (InterPro:IPR007012), Nucleotidyltransferase (InterPro:IPR002934), Poly(A) polymerase, RNA-binding region (InterPro:IPR007010); BEST Arabidopsis thaliana protein match is: nPAP (NUCLEAR POLY(A) POLYMERASE); nucleotidyltransferase/ protein binding (TAIR:AT4G32850.6); Has 588 Blast hits to 588 proteins in 160 species: Archae - 0; Bacteria - 9; Metazoa - 233; Fungi - 135; Plants - 107; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT2G25850.1p  transcript_id AT2G25850.1  protein_id AT2G25850.1p  transcript_id AT2G25850.1  
At2g25870	chr2:011031159	0.0	W/11031159-11031524,11031616-11031867,11031946-11032041,11032302-11032479,11032586-11032654,11032739-11032839,11032987-11033079,11033160-11033231,11033490-11033609,11033695-11033745,11033834-11034022,11034135-11034302	AT2G25870.1  CDS  gene_syn AT2G25860, F17H15.10, F17H15_10  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity|GO:0016787||IEA  go_function hydrolase activity|GO:0016787||ISS  product haloacid dehalogenase-like hydrolase family protein  note haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cof protein (InterPro:IPR000150), HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), HAD superfamily hydrolase-like, type 3 (InterPro:IPR013200), Uncharacterised protein family UPF0054 (InterPro:IPR002036); Has 11617 Blast hits to 11603 proteins in 1525 species: Archae - 144; Bacteria - 9370; Metazoa - 28; Fungi - 12; Plants - 43; Viruses - 0; Other Eukaryotes - 2020 (source: NCBI BLink).  protein_id AT2G25870.1p  transcript_id AT2G25870.1  protein_id AT2G25870.1p  transcript_id AT2G25870.1  
At2g25880	chr2:011036798	0.0	C/11036798-11036827,11036245-11036352,11036008-11036154,11035816-11035911,11035450-11035546,11035244-11035361,11035076-11035148,11034887-11034988	AT2G25880.2  CDS  gene_syn AtAUR2, AtAurora2, F17H15.9, F17H15_9  gene AtAUR2  function Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle.  go_component nucleus|GO:0005634|15722465|IDA  go_process histone phosphorylation|GO:0016572|16028112|IDA  go_function kinase activity|GO:0016301||ISS  go_function histone kinase activity (H3-S10 specific)|GO:0035175|16028112|IDA  product AtAUR2 (AtAurora2); histone kinase(H3-S10 specific) / kinase  note AtAurora2 (AtAUR2); FUNCTIONS IN: histone kinase activity (H3-S10 specific), kinase activity; INVOLVED IN: histone phosphorylation; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: AtAUR1 (ATAURORA1); histone kinase(H3-S10 specific) / kinase/ protein serine/threonine kinase (TAIR:AT4G32830.1); Has 60702 Blast hits to 59135 proteins in 1371 species: Archae - 9; Bacteria - 4239; Metazoa - 27549; Fungi - 6432; Plants - 10076; Viruses - 142; Other Eukaryotes - 12255 (source: NCBI BLink).  protein_id AT2G25880.2p  transcript_id AT2G25880.2  protein_id AT2G25880.2p  transcript_id AT2G25880.2  
At2g25880	chr2:011036798	0.0	C/11036798-11036827,11036245-11036352,11036008-11036154,11035816-11035911,11035639-11035734,11035450-11035546,11035244-11035361,11035076-11035148,11034887-11034988	AT2G25880.1  CDS  gene_syn AtAUR2, AtAurora2, F17H15.9, F17H15_9  gene AtAUR2  function Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle.  go_component nucleus|GO:0005634|15722465|IDA  go_process histone phosphorylation|GO:0016572|16028112|IDA  go_function kinase activity|GO:0016301||ISS  go_function histone kinase activity (H3-S10 specific)|GO:0035175|16028112|IDA  product AtAUR2 (AtAurora2); histone kinase(H3-S10 specific) / kinase  note AtAurora2 (AtAUR2); FUNCTIONS IN: histone kinase activity (H3-S10 specific), kinase activity; INVOLVED IN: histone phosphorylation; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: AtAUR1 (ATAURORA1); histone kinase(H3-S10 specific) / kinase/ protein serine/threonine kinase (TAIR:AT4G32830.1); Has 95240 Blast hits to 93570 proteins in 2943 species: Archae - 60; Bacteria - 8560; Metazoa - 40884; Fungi - 8566; Plants - 18598; Viruses - 501; Other Eukaryotes - 18071 (source: NCBI BLink).  protein_id AT2G25880.1p  transcript_id AT2G25880.1  protein_id AT2G25880.1p  transcript_id AT2G25880.1  
At2g25890	chr2:011037435	0.0	W/11037435-11037884	AT2G25890.1  CDS  gene_syn F17H15.8, F17H15_8  go_component monolayer-surrounded lipid storage body|GO:0012511||IEA  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  go_process lipid storage|GO:0019915||ISS  go_function molecular_function|GO:0003674||ND  product glycine-rich protein / oleosin  note glycine-rich protein / oleosin; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lipid storage; LOCATED IN: monolayer-surrounded lipid storage body, integral to membrane, membrane; EXPRESSED IN: leaf whorl, petal, flower, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136); BEST Arabidopsis thaliana protein match is: OLEO1 (OLEOSIN 1) (TAIR:AT4G25140.1); Has 402 Blast hits to 402 proteins in 48 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 398; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G25890.1p  transcript_id AT2G25890.1  protein_id AT2G25890.1p  transcript_id AT2G25890.1  
At2g25900	chr2:011041817	0.0	W/11041817-11042764	AT2G25900.1  CDS  gene_syn ATCTH, F17H15.7, F17H15_7, PUTATIVE CYS3HIS ZINC FINGER PROTEIN  gene ATCTH  function putative Cys3His zinc finger protein (ATCTH) mRNA, complete  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ATCTH; transcription factor  note ATCTH; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein (TAIR:AT2G19810.1); Has 530 Blast hits to 507 proteins in 97 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 2; Plants - 210; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).  protein_id AT2G25900.1p  transcript_id AT2G25900.1  protein_id AT2G25900.1p  transcript_id AT2G25900.1  
At2g25910	chr2:011051943	0.0	C/11051943-11051997,11051239-11051414,11051023-11051154,11050885-11050935,11050692-11050788,11050390-11050436,11050063-11050282,11049715-11049844,11049580-11049622,11049379-11049453	AT2G25910.1  CDS  gene_syn F17H15.6, F17H15_6  go_component intracellular|GO:0005622||IEA  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function 3 -5  exonuclease activity|GO:0008408||IEA  go_component intracellular|GO:0005622||ISS  go_function nucleic acid binding|GO:0003676||ISS  go_function 3 -5  exonuclease activity|GO:0008408||ISS  product 3 -5  exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein  note 3 -5  exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein; FUNCTIONS IN: 3 -5  exonuclease activity, RNA binding, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111), K Homology, type 1 (InterPro:IPR004088), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), 3&apos;-5&apos; exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25920.1); Has 798 Blast hits to 798 proteins in 239 species: Archae - 0; Bacteria - 274; Metazoa - 164; Fungi - 38; Plants - 61; Viruses - 0; Other Eukaryotes - 261 (source: NCBI BLink).  protein_id AT2G25910.1p  transcript_id AT2G25910.1  protein_id AT2G25910.1p  transcript_id AT2G25910.1  
At2g25910	chr2:011051943	0.0	C/11051943-11051997,11051239-11051414,11051023-11051154,11050885-11050935,11050692-11050788,11050390-11050436,11050063-11050282,11049715-11049844,11049580-11049625,11049379-11049453	AT2G25910.2  CDS  gene_syn F17H15.6, F17H15_6  go_component intracellular|GO:0005622||IEA  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function 3 -5  exonuclease activity|GO:0008408||IEA  go_component intracellular|GO:0005622||ISS  go_function nucleic acid binding|GO:0003676||ISS  go_function 3 -5  exonuclease activity|GO:0008408||ISS  product 3 -5  exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein  note 3 -5  exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein; FUNCTIONS IN: 3 -5  exonuclease activity, RNA binding, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111), K Homology, type 1 (InterPro:IPR004088), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), 3&apos;-5&apos; exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25920.1); Has 798 Blast hits to 798 proteins in 239 species: Archae - 0; Bacteria - 274; Metazoa - 164; Fungi - 38; Plants - 61; Viruses - 0; Other Eukaryotes - 261 (source: NCBI BLink).  protein_id AT2G25910.2p  transcript_id AT2G25910.2  protein_id AT2G25910.2p  transcript_id AT2G25910.2  
At2g25920	chr2:011055862	0.0	C/11055862-11055916,11055267-11055406,11055079-11055176,11054425-11054974	AT2G25920.1  CDS  gene_syn F17H15.5, F17H15_5  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: 3 -5  exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein (TAIR:AT2G25910.2); Has 84 Blast hits to 79 proteins in 34 species: Archae - 0; Bacteria - 23; Metazoa - 11; Fungi - 12; Plants - 23; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT2G25920.1p  transcript_id AT2G25920.1  protein_id AT2G25920.1p  transcript_id AT2G25920.1  
At2g25930	chr2:011059459	0.0	W/11059459-11059677,11060040-11060836,11062017-11062068,11062159-11063178	AT2G25930.1  CDS  gene_syn EARLY FLOWERING 3, ELF3, F17H15.25, PYK20  gene ELF3  function Encodes a novel nuclear protein that is expressed rhythmically and interacts with phytochrome B to control plant development and flowering through a signal transduction pathway Elf3 controls rhythmic circadian outputs under constant light conditions.  go_component nucleus|GO:0005634|11402161|IDA  go_process circadian rhythm|GO:0007623|11402162|IMP  go_process response to cold|GO:0009409|10571046|IEP  go_process red, far-red light phototransduction|GO:0009585|11402161|IMP  go_process response to auxin stimulus|GO:0009733|10571046|IEP  go_process response to abscisic acid stimulus|GO:0009737|10571046|IEP  go_process unidimensional cell growth|GO:0009826|10759510|IMP  go_process regulation of flower development|GO:0009909|10759510|IMP  go_process circumnutation|GO:0010031|15908440|IMP  go_process photoperiodism, flowering|GO:0048573|18799658|IMP  go_function transcription factor activity|GO:0003700|10571046|ISS  go_function protein C-terminus binding|GO:0008022|11402161|IPI  product ELF3 (EARLY FLOWERING 3); protein C-terminus binding / transcription factor  note EARLY FLOWERING 3 (ELF3); FUNCTIONS IN: transcription factor activity, protein C-terminus binding; INVOLVED IN: in 9 processes; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G21320.1); Has 3524 Blast hits to 3027 proteins in 235 species: Archae - 0; Bacteria - 85; Metazoa - 1367; Fungi - 724; Plants - 273; Viruses - 17; Other Eukaryotes - 1058 (source: NCBI BLink).  protein_id AT2G25930.1p  transcript_id AT2G25930.1  protein_id AT2G25930.1p  transcript_id AT2G25930.1  
At2g25940	chr2:011065838	0.0	C/11065838-11066020,11065258-11065422,11065022-11065178,11064850-11064935,11064527-11064775,11064203-11064412,11063904-11064107,11063496-11063678	AT2G25940.1  CDS  gene_syn ALPHA-VPE, ALPHAVPE, F17H15.4, alpha-vacuolar processing enzyme  gene ALPHA-VPE  function Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions.  go_component endomembrane system|GO:0012505||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_process proteolysis|GO:0006508||ISS  go_process vacuolar protein processing|GO:0006624|7579169|ISS  go_function cysteine-type endopeptidase activity|GO:0004197||ISS  product ALPHA-VPE (alpha-vacuolar processing enzyme); cysteine-type endopeptidase  note alpha-vacuolar processing enzyme (ALPHA-VPE); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis, vacuolar protein processing; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase C13, legumain (InterPro:IPR001096); BEST Arabidopsis thaliana protein match is: GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME); cysteine-type endopeptidase (TAIR:AT4G32940.1); Has 601 Blast hits to 599 proteins in 186 species: Archae - 4; Bacteria - 2; Metazoa - 234; Fungi - 78; Plants - 186; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).  protein_id AT2G25940.1p  transcript_id AT2G25940.1  protein_id AT2G25940.1p  transcript_id AT2G25940.1  
At2g25950	chr2:011068735	0.0	W/11068735-11068818,11069107-11069187,11069357-11069406,11069593-11069670,11069781-11069838,11069925-11069974,11070152-11070260,11070341-11070402,11070482-11070524	AT2G25950.1  CDS  gene_syn F17H15.2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1000 (InterPro:IPR010400); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04780.1); Has 429 Blast hits to 429 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 205; Fungi - 104; Plants - 50; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT2G25950.1p  transcript_id AT2G25950.1  protein_id AT2G25950.1p  transcript_id AT2G25950.1  
At2g25964	chr2:011071135	0.0	C/11071135-11071287	AT2G25964.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G25964.1p  transcript_id AT2G25964.1  protein_id AT2G25964.1p  transcript_id AT2G25964.1  
At2g25970	chr2:011075271	0.0	C/11075271-11075604,11074893-11075176,11074702-11074803,11074558-11074629,11074353-11074472,11071844-11072830	AT2G25970.1  CDS  gene_syn F17H15.1, F17H15_1  go_function RNA binding|GO:0003723||IEA  go_function nucleic acid binding|GO:0003676||ISS  product KH domain-containing protein  note KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT4G10070.1); Has 58601 Blast hits to 28880 proteins in 1175 species: Archae - 49; Bacteria - 9002; Metazoa - 29116; Fungi - 7911; Plants - 5123; Viruses - 311; Other Eukaryotes - 7089 (source: NCBI BLink).  protein_id AT2G25970.1p  transcript_id AT2G25970.1  protein_id AT2G25970.1p  transcript_id AT2G25970.1  
At2g25975	chr2:011076817	0.0	W/11076817-11077185	AT2G25975.1  mRNA_TE_gene  pseudo  gene_syn T19L18.22  note Transposable element gene, copia-like retrotransposon family, has a 5.1e-14 P-value blast match to GB:CAA26446 ORF2 (Ty1_Copia-element) (Drosophila melanogaster)  
At2g25980	chr2:011079445	0.0	C/11079445-11079642,11078697-11079140,11078059-11078514,11077718-11077969	AT2G25980.1  CDS  gene_syn T19L18.21, T19L18_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product jacalin lectin family protein  note jacalin lectin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin lectin family protein (TAIR:AT1G33790.1); Has 1217 Blast hits to 464 proteins in 30 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1213; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G25980.1p  transcript_id AT2G25980.1  protein_id AT2G25980.1p  transcript_id AT2G25980.1  
At2g25990	chr2:011080607	0.0	W/11080607-11080666	AT2G25990.1  CDS  gene_syn T19L18.20, T19L18_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G25990.1p  transcript_id AT2G25990.1  protein_id AT2G25990.1p  transcript_id AT2G25990.1  
At2g26000	chr2:011082403	0.0	W/11082403-11082567,11082669-11082784,11082989-11083097,11083190-11083313,11083473-11083570,11083659-11083765,11083861-11084107,11084239-11084292,11084432-11084575,11084682-11084746,11084840-11084894,11084982-11085137	AT2G26000.2  CDS  gene_syn T19L18.19, T19L18_19  go_component chloroplast|GO:0009507||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function catalytic activity|GO:0003824||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, catalytic activity, zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: BRCA1-associated 2 (InterPro:IPR011422), Zinc finger, UBP-type (InterPro:IPR001607), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (ubiquitin-hydrolase) domain-containing protein (TAIR:AT2G42160.1); Has 2381 Blast hits to 2325 proteins in 225 species: Archae - 0; Bacteria - 82; Metazoa - 951; Fungi - 240; Plants - 530; Viruses - 3; Other Eukaryotes - 575 (source: NCBI BLink).  protein_id AT2G26000.2p  transcript_id AT2G26000.2  protein_id AT2G26000.2p  transcript_id AT2G26000.2  
At2g26000	chr2:011082403	0.0	W/11082403-11082567,11082669-11082784,11082989-11083097,11083190-11083313,11083473-11083570,11083659-11083765,11083861-11084107,11084432-11084575,11084682-11084746,11084840-11084894,11084982-11085137	AT2G26000.1  CDS  gene_syn T19L18.19, T19L18_19  go_component chloroplast|GO:0009507||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function catalytic activity|GO:0003824||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, catalytic activity, zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: BRCA1-associated 2 (InterPro:IPR011422), Zinc finger, UBP-type (InterPro:IPR001607), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (ubiquitin-hydrolase) domain-containing protein (TAIR:AT2G42160.1); Has 1736 Blast hits to 1710 proteins in 181 species: Archae - 0; Bacteria - 34; Metazoa - 695; Fungi - 210; Plants - 521; Viruses - 0; Other Eukaryotes - 276 (source: NCBI BLink).  protein_id AT2G26000.1p  transcript_id AT2G26000.1  protein_id AT2G26000.1p  transcript_id AT2G26000.1  
At2g26010	chr2:011087411	0.0	W/11087411-11087474,11087577-11087755	AT2G26010.1  CDS  gene_syn PDF1.3, T19L18.18, T19L18_18, plant defensin 1.3  gene PDF1.3  function Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.  go_component endomembrane system|GO:0012505||IEA  go_component cell wall|GO:0005618||ISS  go_process defense response|GO:0006952|18674922|ISS  go_process defense response|GO:0006952||ISS  go_function molecular_function|GO:0003674||ND  product PDF1.3 (plant defensin 1.3)  note plant defensin 1.3 (PDF1.3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: endomembrane system, cell wall; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: PDF1.2c (plant defensin 1.2c) (TAIR:AT5G44430.1); Has 134 Blast hits to 134 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G26010.1p  transcript_id AT2G26010.1  protein_id AT2G26010.1p  transcript_id AT2G26010.1  
At2g26020	chr2:011089281	0.0	W/11089281-11089344,11089419-11089597	AT2G26020.1  CDS  gene_syn PDF1.2b, T19L18.17, T19L18_17, plant defensin 1.2b  gene PDF1.2b  function Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.  go_component endomembrane system|GO:0012505||IEA  go_component cell wall|GO:0005618||ISS  go_process defense response|GO:0006952|18674922|ISS  go_process defense response|GO:0006952||ISS  go_function molecular_function|GO:0003674||ND  product PDF1.2b (plant defensin 1.2b)  note plant defensin 1.2b (PDF1.2b); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: endomembrane system, cell wall; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: PDF1.2c (plant defensin 1.2c) (TAIR:AT5G44430.1); Has 130 Blast hits to 130 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G26020.1p  transcript_id AT2G26020.1  protein_id AT2G26020.1p  transcript_id AT2G26020.1  
At2g26030	chr2:011092092	0.0	C/11092092-11092781,11091865-11092005,11091505-11091783	AT2G26030.2  CDS  gene_syn T19L18.16, T19L18_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G44950.1); Has 569 Blast hits to 560 proteins in 7 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 567; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G26030.2p  transcript_id AT2G26030.2  protein_id AT2G26030.2p  transcript_id AT2G26030.2  
At2g26030	chr2:011092092	0.0	C/11092092-11093000,11091865-11092005,11091505-11091783	AT2G26030.1  CDS  gene_syn T19L18.16, T19L18_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G44950.1); Has 1315 Blast hits to 1288 proteins in 9 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1313; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G26030.1p  transcript_id AT2G26030.1  protein_id AT2G26030.1p  transcript_id AT2G26030.1  
At2g26030	chr2:011092092	0.0	C/11092092-11093000,11091865-11092005,11091505-11091783	AT2G26030.3  CDS  gene_syn T19L18.16, T19L18_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G44950.1); Has 1315 Blast hits to 1288 proteins in 9 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1313; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G26030.3p  transcript_id AT2G26030.3  protein_id AT2G26030.3p  transcript_id AT2G26030.3  
At2g26040	chr2:011094832	0.0	C/11094832-11095404	AT2G26040.1  CDS  gene_syn T19L18.15, T19L18_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Bet v I allergen family protein  note Bet v I allergen family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, guard cell, carpel, leaf; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G73000.1); Has 223 Blast hits to 219 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 220; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G26040.1p  transcript_id AT2G26040.1  protein_id AT2G26040.1p  transcript_id AT2G26040.1  
At2g26050	chr2:011099268	0.0	C/11099268-11099380,11098652-11099204	AT2G26050.1  CDS  gene_syn T19L18.14, T19L18_14  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G80220.1); Has 152 Blast hits to 148 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G26050.1p  transcript_id AT2G26050.1  protein_id AT2G26050.1p  transcript_id AT2G26050.1  
At2g26060	chr2:011102400	0.0	W/11102400-11102597,11102856-11103002,11103291-11103509,11103618-11103682,11103782-11103847,11103958-11104029,11104188-11104250,11104472-11104541,11104721-11104804,11105053-11105127	AT2G26060.1  CDS  gene_syn T19L18.13, T19L18_13, emb1345, embryo defective 1345  gene emb1345  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function nucleotide binding|GO:0000166||ISS  product emb1345 (embryo defective 1345); nucleotide binding  note embryo defective 1345 (emb1345); FUNCTIONS IN: nucleotide binding; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: heterotrimeric G-protein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: nucleotide binding (TAIR:AT4G32990.1); Has 51464 Blast hits to 22061 proteins in 618 species: Archae - 44; Bacteria - 5250; Metazoa - 23563; Fungi - 10330; Plants - 5071; Viruses - 0; Other Eukaryotes - 7206 (source: NCBI BLink).  protein_id AT2G26060.1p  transcript_id AT2G26060.1  protein_id AT2G26060.1p  transcript_id AT2G26060.1  
At2g26060	chr2:011102400	0.0	W/11102400-11102597,11102856-11103002,11103291-11103509,11103618-11103682,11103782-11103847,11103958-11104029,11104188-11104250,11104472-11104541,11104721-11104808,11105056-11105081	AT2G26060.2  CDS  gene_syn T19L18.13, T19L18_13, emb1345, embryo defective 1345  gene emb1345  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function nucleotide binding|GO:0000166||ISS  product emb1345 (embryo defective 1345); nucleotide binding  note embryo defective 1345 (emb1345); FUNCTIONS IN: nucleotide binding; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: heterotrimeric G-protein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: nucleotide binding (TAIR:AT4G32990.1); Has 49233 Blast hits to 21425 proteins in 596 species: Archae - 42; Bacteria - 5169; Metazoa - 22604; Fungi - 9791; Plants - 4794; Viruses - 0; Other Eukaryotes - 6833 (source: NCBI BLink).  protein_id AT2G26060.2p  transcript_id AT2G26060.2  protein_id AT2G26060.2p  transcript_id AT2G26060.2  
At2g26070	chr2:011106275	0.0	C/11106275-11106607,11105741-11106160	AT2G26070.1  CDS  gene_syn REVERSION-TO-ETHYLENE SENSITIVITY1, RTE1, T19L18.12, T19L18_12  gene RTE1  function Encodes a predicted membrane protein. Similar sequences are widely distributed and conserved in plants, animals and protists but absent in fungi and prokaryotes. The sequence has no known motifs and no biological function has been assigned in any species. In Arabidopsis, it appears to be involved in the negative regulation of the response to ethylene, is localized to the Golgi and is a positive regulator of ETR1.  go_component endoplasmic reticulum|GO:0005783|17999643|IDA  go_component Golgi apparatus|GO:0005794|17644624|IDA  go_process response to ethylene stimulus|GO:0009723|16682642|IEP  go_process negative regulation of ethylene mediated signaling pathway|GO:0010105|16682642|IMP  go_process negative regulation of ethylene mediated signaling pathway|GO:0010105|17644624|IGI  go_function molecular_function|GO:0003674||ND  product RTE1 (REVERSION-TO-ETHYLENE SENSITIVITY1)  note REVERSION-TO-ETHYLENE SENSITIVITY1 (RTE1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to ethylene stimulus, negative regulation of ethylene mediated signaling pathway; LOCATED IN: endoplasmic reticulum, Golgi apparatus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF778 (InterPro:IPR008496); BEST Arabidopsis thaliana protein match is: RTH (RTE1-HOMOLOG) (TAIR:AT3G51040.3); Has 209 Blast hits to 209 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT2G26070.1p  transcript_id AT2G26070.1  protein_id AT2G26070.1p  transcript_id AT2G26070.1  
At2g26080	chr2:011112554	0.0	C/11112554-11113786,11112143-11112388,11111960-11112037,11111767-11111867,11111474-11111669,11111275-11111400,11111007-11111192,11110800-11110913,11110572-11110724,11110286-11110474,11110122-11110199,11109914-11110039,11109715-11109813,11109511-11109628,11109330-11109421	AT2G26080.1  CDS  gene_syn Arabidopsis thaliana glycine decarboxylase P-protein 2, AtGLDP2, T19L18.11, T19L18_11  gene AtGLDP2  go_component mitochondrion|GO:0005739|17137349|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process glycine metabolic process|GO:0006544||IEA  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component glycine cleavage complex|GO:0005960||ISS  go_process glycine decarboxylation via glycine cleavage system|GO:0019464||ISS  go_function glycine dehydrogenase (decarboxylating) activity|GO:0004375||ISS  product AtGLDP2 (Arabidopsis thaliana glycine decarboxylase P-protein 2); ATP binding / glycine dehydrogenase (decarboxylating)  note Arabidopsis thaliana glycine decarboxylase P-protein 2 (AtGLDP2); FUNCTIONS IN: glycine dehydrogenase (decarboxylating) activity, ATP binding; INVOLVED IN: glycine decarboxylation via glycine cleavage system, glycine metabolic process; LOCATED IN: mitochondrion, glycine cleavage complex, chloroplast, chloroplast envelope; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Glycine cleavage system P-protein (InterPro:IPR003437), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: AtGLDP1 (Arabidopsis thaliana glycine decarboxylase P-protein 1); catalytic/ glycine dehydrogenase (decarboxylating)/ pyridoxal phosphate binding (TAIR:AT4G33010.1); Has 9803 Blast hits to 8963 proteins in 1111 species: Archae - 132; Bacteria - 2858; Metazoa - 123; Fungi - 158; Plants - 73; Viruses - 0; Other Eukaryotes - 6459 (source: NCBI BLink).  protein_id AT2G26080.1p  transcript_id AT2G26080.1  protein_id AT2G26080.1p  transcript_id AT2G26080.1  
At2g26090	chr2:011115679	0.0	C/11115679-11115759	AT2G26090.1  tRNA  gene_syn 33025.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: AAG)  transcript_id AT2G26090.1  
At2g26100	chr2:011117702	0.0	C/11117702-11118129,11117172-11117324,11116986-11117068,11116804-11116903,11116607-11116720,11116389-11116531,11116212-11116306	AT2G26100.1  CDS  gene_syn T19L18.9, T19L18_9  go_component chloroplast|GO:0009507||IEA  go_component membrane|GO:0016020||IEA  go_process protein amino acid glycosylation|GO:0006486||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product galactosyltransferase family protein  note galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: chloroplast, membrane; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: galactosyltransferase family protein (TAIR:AT1G53290.1); Has 966 Blast hits to 965 proteins in 75 species: Archae - 0; Bacteria - 2; Metazoa - 634; Fungi - 0; Plants - 320; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT2G26100.1p  transcript_id AT2G26100.1  protein_id AT2G26100.1p  transcript_id AT2G26100.1  
At2g26110	chr2:011120869	0.0	W/11120869-11121798	AT2G26110.1  CDS  gene_syn T19L18.8, T19L18_8  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26130.1); Has 212 Blast hits to 198 proteins in 39 species: Archae - 0; Bacteria - 7; Metazoa - 52; Fungi - 13; Plants - 80; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT2G26110.1p  transcript_id AT2G26110.1  protein_id AT2G26110.1p  transcript_id AT2G26110.1  
At2g26120	chr2:011123430	0.0	W/11123430-11123576,11123650-11123817	AT2G26120.1  CDS  gene_syn T19L18.7, T19L18_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 31 Blast hits to 31 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT2G26120.1p  transcript_id AT2G26120.1  protein_id AT2G26120.1p  transcript_id AT2G26120.1  
At2g26130	chr2:011127134	0.0	W/11127134-11127415,11127487-11128223,11128299-11128476	AT2G26130.1  CDS  gene_syn T19L18.6, T19L18_6  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G26135.1); Has 2066 Blast hits to 2048 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 1026; Fungi - 351; Plants - 354; Viruses - 0; Other Eukaryotes - 335 (source: NCBI BLink).  protein_id AT2G26130.1p  transcript_id AT2G26130.1  protein_id AT2G26130.1p  transcript_id AT2G26130.1  
At2g26135	chr2:011130119	0.0	W/11130119-11130439,11130507-11130605,11130700-11131277,11131358-11131514	AT2G26135.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G26130.1); Has 2315 Blast hits to 2297 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 1170; Fungi - 390; Plants - 368; Viruses - 5; Other Eukaryotes - 382 (source: NCBI BLink).  protein_id AT2G26135.1p  transcript_id AT2G26135.1  protein_id AT2G26135.1p  transcript_id AT2G26135.1  
At2g26140	chr2:011135100	0.0	C/11135100-11135126,11134585-11134672,11134231-11134503,11133856-11134092,11133645-11133769,11132976-11133452,11131939-11132865	AT2G26140.1  CDS  gene_syn FtsH protease 4, T19L18.5, T19L18_5, ftsh4  gene ftsh4  function encodes an FtsH protease that is localized to the mitochondrion  go_component membrane|GO:0016020|17432890|IDA  go_process proteolysis|GO:0006508||IEA  go_process protein catabolic process|GO:0030163||IEA  go_component mitochondrion|GO:0005739|14630971|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_function ATP-dependent peptidase activity|GO:0004176|11299370|ISS  go_function metallopeptidase activity|GO:0008237||ISS  go_function ATPase activity|GO:0016887||ISS  product ftsh4 (FtsH protease 4); ATP-dependent peptidase/ ATPase/ metallopeptidase  note FtsH protease 4 (ftsh4); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: proteolysis, protein catabolic process; LOCATED IN: mitochondrion, plastid, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546), Peptidase S16, Lon protease, C-terminal region (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: FTSH11 (FtsH protease 11); ATP-dependent peptidase/ ATPase/ metallopeptidase (TAIR:AT5G53170.1); Has 27777 Blast hits to 26082 proteins in 1872 species: Archae - 917; Bacteria - 8810; Metazoa - 4317; Fungi - 2451; Plants - 1814; Viruses - 31; Other Eukaryotes - 9437 (source: NCBI BLink).  protein_id AT2G26140.1p  transcript_id AT2G26140.1  protein_id AT2G26140.1p  transcript_id AT2G26140.1  
At2g26150	chr2:011135856	0.0	W/11135856-11136164,11136489-11137217	AT2G26150.1  CDS  gene_syn ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A2, ATHSFA2, HEAT SHOCK TRANSCRIPTION FACTOR A2, HSFA2, T19L18.4, T19L18_4  gene ATHSFA2  function member of Heat Stress Transcription Factor (Hsf) family. Involved in response to misfolded protein accumulation in the cytosol. Regulated by alternative splicing and non-sense-mediated decay.  go_component nucleus|GO:0005634||IEA  go_process response to heat|GO:0009408|15247379|IEP  go_process response to heat|GO:0009408|17059409|IEP  go_process response to high light intensity|GO:0009644|17059409|IEP  go_process response to chitin|GO:0010200|17722694|IEP  go_process cellular response to unfolded protein|GO:0034620|19244141|IEP  go_process cellular response to unfolded protein|GO:0034620|19244141|IMP  go_process response to hydrogen peroxide|GO:0042542|17059409|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product ATHSFA2; DNA binding / transcription factor  note ATHSFA2; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to high light intensity, cellular response to unfolded protein, response to hydrogen peroxide, response to heat, response to chitin; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: AT-HSFA6B; DNA binding / transcription factor (TAIR:AT3G22830.1); Has 1344 Blast hits to 1340 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 259; Fungi - 317; Plants - 512; Viruses - 0; Other Eukaryotes - 256 (source: NCBI BLink).  protein_id AT2G26150.1p  transcript_id AT2G26150.1  protein_id AT2G26150.1p  transcript_id AT2G26150.1  
At2g26150	chr2:011136052	0.0	W/11136052-11136164,11136246-11136276,11136489-11137217	AT2G26150.2  CDS  gene_syn ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A2, ATHSFA2, HEAT SHOCK TRANSCRIPTION FACTOR A2, HSFA2, T19L18.4, T19L18_4  gene ATHSFA2  function member of Heat Stress Transcription Factor (Hsf) family. Involved in response to misfolded protein accumulation in the cytosol. Regulated by alternative splicing and non-sense-mediated decay.  go_component nucleus|GO:0005634||IEA  go_component endomembrane system|GO:0012505||IEA  go_process response to heat|GO:0009408|15247379|IEP  go_process response to heat|GO:0009408|17059409|IEP  go_process response to high light intensity|GO:0009644|17059409|IEP  go_process response to chitin|GO:0010200|17722694|IEP  go_process cellular response to unfolded protein|GO:0034620|19244141|IEP  go_process cellular response to unfolded protein|GO:0034620|19244141|IMP  go_process response to hydrogen peroxide|GO:0042542|17059409|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product ATHSFA2; DNA binding / transcription factor  note ATHSFA2; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to high light intensity, cellular response to unfolded protein, response to hydrogen peroxide, response to heat, response to chitin; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: AT-HSFA6B; DNA binding / transcription factor (TAIR:AT3G22830.1); Has 514 Blast hits to 511 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 0; Plants - 491; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT2G26150.2p  transcript_id AT2G26150.2  protein_id AT2G26150.2p  transcript_id AT2G26150.2  
At2g26160	chr2:011138456	0.0	C/11138456-11139451	AT2G26160.1  CDS  gene_syn T19L18.3, T19L18_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G25750.1); Has 179 Blast hits to 177 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 179; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G26160.1p  transcript_id AT2G26160.1  protein_id AT2G26160.1p  transcript_id AT2G26160.1  
At2g26170	chr2:011140851	0.0	W/11140851-11141092,11141696-11141848,11141923-11142670,11142763-11142858,11142941-11143270	AT2G26170.1  CDS  gene_syn CYP711A1, MAX1, MORE AXILLARY BRANCHES 1, T1D16.19, T1D16_19  gene CYP711A1  function Encodes a protein with similarity to thromboxane-A synthase, member of the CYP711A cytochrome P450 family. MAX1 is a specific repressor of vegetative axillary buds generated by the axillary meristem. Expressed in vascular traces in the rosette stem and axillary buds throughout plant development. Mutants have increased axillary branches. Along with MAX3,4 thought to mediate control of shoot branching via synthesis of a signal molecule which is transported over long distance mediated by MAX2. cDNA supports the existence of the longer transcript predicted for this locus, no cDNA isolated for shorter transcript. MAX1 downregulates 11 genes involved in flavonoid pathway (CHS, CHI, F3H, F3 H, FLS, DFR, ANS, UFGT, RT, AAC and GST).  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process auxin polar transport|GO:0009926|16546078|IMP  go_process regulation of meristem organization|GO:0009934|11874909|IMP  go_process positive regulation of flavonoid biosynthetic process|GO:0009963|16387852|IEP  go_process secondary shoot formation|GO:0010223|15737939|IMP  go_process carotenoid biosynthetic process|GO:0016117|15737939|TAS  go_function oxygen binding|GO:0019825||ISS  product CYP711A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP711A1; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: regulation of meristem organization, positive regulation of flavonoid biosynthetic process, carotenoid biosynthetic process, secondary shoot formation, auxin polar transport; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP71A20; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G13310.1); Has 24200 Blast hits to 23996 proteins in 1277 species: Archae - 23; Bacteria - 2970; Metazoa - 10504; Fungi - 4411; Plants - 5092; Viruses - 3; Other Eukaryotes - 1197 (source: NCBI BLink).  protein_id AT2G26170.1p  transcript_id AT2G26170.1  protein_id AT2G26170.1p  transcript_id AT2G26170.1  
At2g26170	chr2:011141703	0.0	W/11141703-11141848,11141923-11142670,11142763-11142858,11142941-11143270	AT2G26170.2  CDS  gene_syn CYP711A1, MAX1, MORE AXILLARY BRANCHES 1, T1D16.19, T1D16_19  gene CYP711A1  function Encodes a protein with similarity to thromboxane-A synthase, member of the CYP711A cytochrome P450 family. MAX1 is a specific repressor of vegetative axillary buds generated by the axillary meristem. Expressed in vascular traces in the rosette stem and axillary buds throughout plant development. Mutants have increased axillary branches. Along with MAX3,4 thought to mediate control of shoot branching via synthesis of a signal molecule which is transported over long distance mediated by MAX2. cDNA supports the existence of the longer transcript predicted for this locus, no cDNA isolated for shorter transcript. MAX1 downregulates 11 genes involved in flavonoid pathway (CHS, CHI, F3H, F3 H, FLS, DFR, ANS, UFGT, RT, AAC and GST).  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process auxin polar transport|GO:0009926|16546078|IMP  go_process regulation of meristem organization|GO:0009934|11874909|IMP  go_process positive regulation of flavonoid biosynthetic process|GO:0009963|16387852|IEP  go_process secondary shoot formation|GO:0010223|15737939|IMP  go_process carotenoid biosynthetic process|GO:0016117|15737939|TAS  go_function oxygen binding|GO:0019825||ISS  product CYP711A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP711A1; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: regulation of meristem organization, positive regulation of flavonoid biosynthetic process, carotenoid biosynthetic process, secondary shoot formation, auxin polar transport; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP709B1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT2G46960.2); Has 23768 Blast hits to 23721 proteins in 1263 species: Archae - 23; Bacteria - 2970; Metazoa - 10264; Fungi - 4393; Plants - 4930; Viruses - 3; Other Eukaryotes - 1185 (source: NCBI BLink).  protein_id AT2G26170.2p  transcript_id AT2G26170.2  protein_id AT2G26170.2p  transcript_id AT2G26170.2  
At2g26180	chr2:011144917	0.0	C/11144917-11144982,11144615-11144842,11144310-11144537,11144124-11144237,11143433-11144047	AT2G26180.1  CDS  gene_syn IQ-domain 6, IQD6, T1D16.18, T1D16_18  gene IQD6  go_component cellular_component|GO:0005575||ND  go_function calmodulin binding|GO:0005516||ISS  product IQD6 (IQ-domain 6); calmodulin binding  note IQ-domain 6 (IQD6); FUNCTIONS IN: calmodulin binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: iqd8 (IQ-domain 8); calmodulin binding (TAIR:AT1G72670.1); Has 480 Blast hits to 467 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 7; Plants - 438; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT2G26180.1p  transcript_id AT2G26180.1  protein_id AT2G26180.1p  transcript_id AT2G26180.1  
At2g26190	chr2:011149583	0.0	C/11149583-11150082,11149389-11149503,11149239-11149304,11149064-11149152,11148896-11148983,11148573-11148803,11148387-11148488,11147901-11148308	AT2G26190.1  CDS  gene_syn T1D16.17, T1D16_17  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function calmodulin binding|GO:0005516||ISS  product calmodulin-binding family protein  note calmodulin-binding family protein; FUNCTIONS IN: calmodulin binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: EDA39 (embryo sac development arrest 39); calmodulin binding (TAIR:AT4G33050.3); Has 213 Blast hits to 152 proteins in 39 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 83; Plants - 118; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT2G26190.1p  transcript_id AT2G26190.1  protein_id AT2G26190.1p  transcript_id AT2G26190.1  
At2g26200	chr2:011152875	0.0	W/11152875-11152974,11153061-11153122,11153671-11153721,11153808-11153834,11153917-11154021,11154260-11154367,11154558-11154629,11154729-11154779,11155008-11155070,11155159-11155497,11155611-11156330	AT2G26200.1  CDS  gene_syn T1D16.16, T1D16_16  product unknown protein  note EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 12 (InterPro:IPR013217); BEST Arabidopsis thaliana protein match is: methyltransferase (TAIR:AT1G54650.1); Has 1504 Blast hits to 1429 proteins in 277 species: Archae - 33; Bacteria - 213; Metazoa - 664; Fungi - 202; Plants - 139; Viruses - 0; Other Eukaryotes - 253 (source: NCBI BLink).  protein_id AT2G26200.1p  transcript_id AT2G26200.1  protein_id AT2G26200.1p  transcript_id AT2G26200.1  
At2g26210	chr2:011157654	0.0	W/11157654-11157821,11157898-11157983,11158314-11158371,11158462-11158521,11158596-11158646,11158730-11158808,11158946-11159016	AT2G26210.1  CDS  gene_syn T1D16.15, T1D16_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin protein kinase, putative (TAIR:AT4G18950.1); Has 7248 Blast hits to 4807 proteins in 354 species: Archae - 29; Bacteria - 573; Metazoa - 2319; Fungi - 263; Plants - 284; Viruses - 37; Other Eukaryotes - 3743 (source: NCBI BLink).  protein_id AT2G26210.1p  transcript_id AT2G26210.1  protein_id AT2G26210.1p  transcript_id AT2G26210.1  
At2g26210	chr2:011157723	0.0	W/11157723-11157821,11157898-11157983,11158314-11158371,11158462-11158521,11158596-11158646,11158730-11158808,11158946-11159016	AT2G26210.2  CDS  gene_syn T1D16.15, T1D16_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin protein kinase, putative (TAIR:AT4G18950.1); Has 7241 Blast hits to 4802 proteins in 353 species: Archae - 29; Bacteria - 573; Metazoa - 2313; Fungi - 263; Plants - 284; Viruses - 37; Other Eukaryotes - 3742 (source: NCBI BLink).  protein_id AT2G26210.2p  transcript_id AT2G26210.2  protein_id AT2G26210.2p  transcript_id AT2G26210.2  
At2g26211	chr2:011159702	0.0	W/11159702-11159803	AT2G26211.1  miRNA  gene_syn MICRORNA825A, MIR825A  gene MIR825A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUCUCAAGAAGGUGCAUGAAC  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR825A (MICRORNA825A); miRNA  transcript_id AT2G26211.1  
At2g26215	chr2:011160063	0.0	C/11160063-11161443	AT2G26215.1  mRNA_TE_gene  pseudo  note Transposable element gene  
At2g26220	chr2:011161666	0.0	W/11161666-11162465	AT2G26220.1  pseudogenic_transcript  pseudo  gene_syn T1D16.14  note pseudogene, similar to phosphoenolpyruvate/phosphate translocator precursor, similar to AraPPT, GB:U66321; blastp match of 88% identity and 4.2e-35 P-value to GP|9295275|gb|AAF86907.1|AF223359_1|AF223359 phosphoenolpyruvate/phosphate translocator precursor {Mesembryanthemum crystallinum}  
At2g26230	chr2:011164956	0.0	W/11164956-11165162,11165276-11165368,11165481-11165556,11165636-11165745,11166183-11166274,11166352-11166525,11166612-11166705,11166885-11166968	AT2G26230.1  CDS  gene_syn T1D16.13, T1D16_13  go_component peroxisome|GO:0005777|17951448|IDA  go_process purine base metabolic process|GO:0006144||IEA  go_function urate oxidase activity|GO:0004846||IEA  go_process purine base metabolic process|GO:0006144||ISS  go_function urate oxidase activity|GO:0004846||ISS  product uricase / urate oxidase / nodulin 35, putative  note uricase / urate oxidase / nodulin 35, putative; FUNCTIONS IN: urate oxidase activity; INVOLVED IN: purine base metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uricase (InterPro:IPR002042); Has 485 Blast hits to 483 proteins in 174 species: Archae - 1; Bacteria - 140; Metazoa - 133; Fungi - 135; Plants - 71; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT2G26230.1p  transcript_id AT2G26230.1  protein_id AT2G26230.1p  transcript_id AT2G26230.1  
At2g26240	chr2:011168319	0.0	C/11168319-11168373,11167725-11167859,11167496-11167632	AT2G26240.1  CDS  gene_syn T1D16.12, T1D16_12  go_component mitochondrion|GO:0005739|15276431|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0136, Transmembrane (InterPro:IPR005349); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43520.1); Has 306 Blast hits to 306 proteins in 93 species: Archae - 0; Bacteria - 30; Metazoa - 172; Fungi - 29; Plants - 67; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT2G26240.1p  transcript_id AT2G26240.1  protein_id AT2G26240.1p  transcript_id AT2G26240.1  
At2g26250	chr2:011172652	0.0	C/11172652-11173059,11171492-11172117,11170799-11171417	AT2G26250.1  CDS  gene_syn 3-KETOACYL-COA SYNTHASE 10, FDH, FIDDLEHEAD, KCS10, T1D16.11, T1D16_11  gene KCS10  function epidermis-specific, encodes KCS10, a putative 3-ketoacyl-CoA synthase. probably involved in the synthesis of long-chain lipids found in the cuticle.  go_component membrane|GO:0016020|17432890|IDA  go_function catalytic activity|GO:0003824||IEA  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum|GO:0005783|18465198|IDA  go_process very-long-chain fatty acid metabolic process|GO:0000038|10655527|IMP  go_process response to osmotic stress|GO:0006970|18465198|IEP  go_process lipid biosynthetic process|GO:0008610|10559443|IMP  go_process response to cold|GO:0009409|18465198|IEP  go_process response to light stimulus|GO:0009416|18465198|IEP  go_process epidermal cell differentiation|GO:0009913|10559443|IMP  go_process cuticle development|GO:0042335|10655527|IMP  go_function acyltransferase activity|GO:0008415||ISS  product KCS10 (3-KETOACYL-COA SYNTHASE 10); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups  note 3-KETOACYL-COA SYNTHASE 10 (KCS10); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: in 7 processes; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: KCS4 (3-KETOACYL-COA SYNTHASE 4); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups (TAIR:AT1G19440.1); Has 1015 Blast hits to 993 proteins in 219 species: Archae - 0; Bacteria - 347; Metazoa - 0; Fungi - 0; Plants - 574; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).  protein_id AT2G26250.1p  transcript_id AT2G26250.1  protein_id AT2G26250.1p  transcript_id AT2G26250.1  
At2g26260	chr2:011178237	0.0	W/11178237-11178480,11178557-11178646,11178738-11178871,11179006-11179176,11179999-11180124,11180610-11180689,11181192-11181390,11181479-11181584,11181858-11182032,11182246-11182402,11182553-11182619,11182727-11182872	AT2G26260.1  CDS  gene_syn 3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 2, AT3BETAHSD/D, AT3BETAHSD/D2, T1D16.10, T1D16_10  gene AT3BETAHSD/D2  function Encodes an enzyme with 3& 946;-hydroxysteroid dehydrogenase/C4-decarboxylase activity <i>in vitro</i>. The activity of the enzyme was determined using microsomal extracts of yeast overexpressing the <i>Arabidopsis</i> gene. Cytosolic fractions failed to be associated to the activity, leading to the speculation that the enzyme is membrane-bound.  go_process steroid biosynthetic process|GO:0006694||IEA  go_process metabolic process|GO:0008152||IEA  go_component membrane|GO:0016020|16835224|IDA  go_process steroid biosynthetic process|GO:0006694||ISS  go_function 3-beta-hydroxy-delta5-steroid dehydrogenase activity|GO:0003854||ISS  go_function sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity|GO:0047012|16835224|IDA  go_function sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity|GO:0047012|16835224|IGI  product AT3BETAHSD/D2 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 2); 3-beta-hydroxy-delta5-steroid dehydrogenase/ sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating)  note 3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 2 (AT3BETAHSD/D2); FUNCTIONS IN: 3-beta-hydroxy-delta5-steroid dehydrogenase activity, sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity; INVOLVED IN: steroid biosynthetic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388), NAD(P)-binding (InterPro:IPR016040), 3-beta hydroxysteroid dehydrogenase/isomerase (InterPro:IPR002225); BEST Arabidopsis thaliana protein match is: AT3BETAHSD/D1 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1); 3-beta-hydroxy-delta5-steroid dehydrogenase/ sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) (TAIR:AT1G47290.2); Has 18095 Blast hits to 18084 proteins in 1681 species: Archae - 366; Bacteria - 9360; Metazoa - 858; Fungi - 342; Plants - 1176; Viruses - 132; Other Eukaryotes - 5861 (source: NCBI BLink).  protein_id AT2G26260.1p  transcript_id AT2G26260.1  protein_id AT2G26260.1p  transcript_id AT2G26260.1  
At2g26260	chr2:011178586	0.0	W/11178586-11178646,11178738-11178871,11179006-11179176,11179999-11180124,11180610-11180689,11181192-11181390,11181479-11181584,11181858-11182032,11182246-11182402,11182553-11182619,11182727-11182872	AT2G26260.2  CDS  gene_syn 3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 2, AT3BETAHSD/D, AT3BETAHSD/D2, T1D16.10, T1D16_10  gene AT3BETAHSD/D2  function Encodes an enzyme with 3& 946;-hydroxysteroid dehydrogenase/C4-decarboxylase activity <i>in vitro</i>. The activity of the enzyme was determined using microsomal extracts of yeast overexpressing the <i>Arabidopsis</i> gene. Cytosolic fractions failed to be associated to the activity, leading to the speculation that the enzyme is membrane-bound.  go_process steroid biosynthetic process|GO:0006694||IEA  go_process metabolic process|GO:0008152||IEA  go_component membrane|GO:0016020|16835224|IDA  go_process steroid biosynthetic process|GO:0006694||ISS  go_function 3-beta-hydroxy-delta5-steroid dehydrogenase activity|GO:0003854||ISS  go_function sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity|GO:0047012|16835224|IDA  go_function sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity|GO:0047012|16835224|IGI  product AT3BETAHSD/D2 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 2); 3-beta-hydroxy-delta5-steroid dehydrogenase/ sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating)  note 3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 2 (AT3BETAHSD/D2); FUNCTIONS IN: 3-beta-hydroxy-delta5-steroid dehydrogenase activity, sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity; INVOLVED IN: steroid biosynthetic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388), 3-beta hydroxysteroid dehydrogenase/isomerase (InterPro:IPR002225), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: AT3BETAHSD/D1 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1); 3-beta-hydroxy-delta5-steroid dehydrogenase/ sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) (TAIR:AT1G47290.2); Has 9311 Blast hits to 9300 proteins in 1315 species: Archae - 201; Bacteria - 5236; Metazoa - 646; Fungi - 190; Plants - 440; Viruses - 127; Other Eukaryotes - 2471 (source: NCBI BLink).  protein_id AT2G26260.2p  transcript_id AT2G26260.2  protein_id AT2G26260.2p  transcript_id AT2G26260.2  
At2g26267	chr2:011184213	0.0	W/11184213-11184419	AT2G26267.1  CDS  product unknown protein  note unknown protein; Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G26267.1p  transcript_id AT2G26267.1  protein_id AT2G26267.1p  transcript_id AT2G26267.1  
At2g26270	chr2:011184739	0.0	W/11184739-11184830,11184922-11185022,11185448-11185701,11185792-11185923,11186181-11186300,11186474-11186599,11186689-11186903,11187083-11187236,11187441-11187659	AT2G26270.1  CDS  gene_syn T1D16.9, T1D16_9  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43930.1); Has 14 Blast hits to 14 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G26270.1p  transcript_id AT2G26270.1  protein_id AT2G26270.1p  transcript_id AT2G26270.1  
At2g26280	chr2:011189806	0.0	C/11189806-11190579,11189286-11189724,11189077-11189147,11188581-11188705,11188143-11188437	AT2G26280.1  CDS  gene_syn CID7, T1D16.8, T1D16_8  gene CID7  function smr (Small MutS Related) domain-containing protein mRNA, complete cds  go_component chloroplast|GO:0009507||IEA  go_process mismatch repair|GO:0006298||ISS  go_function damaged DNA binding|GO:0003684||ISS  go_function protein binding|GO:0005515|15650869|IPI  go_function ATP binding|GO:0005524||ISS  product CID7; ATP binding / damaged DNA binding / protein binding  note CID7; FUNCTIONS IN: damaged DNA binding, protein binding, ATP binding; INVOLVED IN: mismatch repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Smr protein/MutS2 C-terminal (InterPro:IPR002625), Region of unknown function DUF1771 (InterPro:IPR013899); BEST Arabidopsis thaliana protein match is: PRLI-interacting factor, putative (TAIR:AT5G58720.1); Has 309 Blast hits to 309 proteins in 103 species: Archae - 0; Bacteria - 0; Metazoa - 71; Fungi - 126; Plants - 79; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT2G26280.1p  transcript_id AT2G26280.1  protein_id AT2G26280.1p  transcript_id AT2G26280.1  
At2g26290	chr2:011193849	0.0	C/11193849-11194259,11193468-11193603,11193000-11193136,11192789-11192912,11192237-11192703	AT2G26290.1  CDS  gene_syn ARSK1, T1D16.7, T1D16_7, root-specific kinase 1  gene ARSK1  go_process response to water deprivation|GO:0009414|7655506|IEP  go_process response to salt stress|GO:0009651|7655506|IEP  go_process response to abscisic acid stimulus|GO:0009737|7655506|IEP  go_function kinase activity|GO:0016301|7655506|ISS  go_function kinase activity|GO:0016301||ISS  product ARSK1 (root-specific kinase 1); kinase  note root-specific kinase 1 (ARSK1); FUNCTIONS IN: kinase activity; INVOLVED IN: response to salt stress, response to water deprivation, response to abscisic acid stimulus; EXPRESSED IN: root cortex, root epidermis, root endodermis, root; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT2G05940.1); Has 77445 Blast hits to 76830 proteins in 1935 species: Archae - 38; Bacteria - 6979; Metazoa - 33747; Fungi - 5907; Plants - 17654; Viruses - 296; Other Eukaryotes - 12824 (source: NCBI BLink).  protein_id AT2G26290.1p  transcript_id AT2G26290.1  protein_id AT2G26290.1p  transcript_id AT2G26290.1  
At2g26300	chr2:011198087	0.0	W/11198087-11198146,11198235-11198307,11198403-11198440,11198531-11198620,11198796-11198873,11198976-11199083,11199166-11199267,11199509-11199564,11199940-11200074,11200157-11200250,11200342-11200401,11200488-11200567,11200645-11200822	AT2G26300.1  CDS  gene_syn ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, ATGPA1, G PROTEIN ALPHA SUBUNIT, G PROTEIN ALPHA SUBUNIT 1, GP ALPHA 1, GPA1, T1D16.6, T1D16_6  gene GP ALPHA 1  function Encodes an alpha subunit of a heterotrimeric GTP-binding protein. The active GTP-bound form of GPA1 binds to the GTG1 and GTG2 abscisic acid (ABA) receptors and appears to affect their GTPase and GTP-binding activity, and hence, ABA binding abilities. GPA1 is a positive regulator in ABA-mediated inhibition of stomatal opening. Plants with recessive mutant alleles have complex phenotypes including: reduced brassinolide response, reduced cell divisions, round leaves, short hypocotyls. It is likely to be involved in the signaling events that trigger unfolded protein response-associated cell death. GPA1 is also involved in sugar signaling.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component endoplasmic reticulum membrane|GO:0005789|9175885|IDA  go_component heterotrimeric G-protein complex|GO:0005834|11121078|IPI  go_component heterotrimeric G-protein complex|GO:0005834|15705948|TAS  go_component plasma membrane|GO:0005886|16618929|IDA  go_component plasma membrane|GO:0005886|9175885|IDA  go_process G-protein signaling, coupled to S1P second messenger (sphingosine kinase activating)|GO:0001789|12789341|IMP  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_process tyrosine biosynthetic process|GO:0006571|16415218|IMP  go_process oxygen and reactive oxygen species metabolic process|GO:0006800|15705948|IMP  go_process G-protein coupled receptor protein signaling pathway|GO:0007186||ISS  go_process cell death|GO:0008219|15705948|IMP  go_process L-phenylalanine biosynthetic process|GO:0009094|16415218|IMP  go_process abscisic acid mediated signaling|GO:0009738|11408655|TAS  go_process gibberellic acid mediated signaling|GO:0009740|12068128|IMP  go_process response to glucose stimulus|GO:0009749|17951432|IGI  go_process positive regulation of abscisic acid mediated signaling|GO:0009789|16614222|IMP  go_process seed germination|GO:0009845|12068128|IMP  go_process thylakoid membrane organization|GO:0010027|19228339|IMP  go_process regulation of stomatal movement|GO:0010119|15705948|TAS  go_process regulation of stomatal movement|GO:0010119|16614222|IMP  go_process response to low fluence blue light stimulus by blue low-fluence system|GO:0010244|16415218|IMP  go_function GTPase activity|GO:0003924|17951432|IDA  go_function signal transducer activity|GO:0004871||ISS  go_function GTPase inhibitor activity|GO:0005095|19135895|IDA  go_function GTP binding|GO:0005525|17951432|IDA  go_function channel regulator activity|GO:0016247|11408655|IMP  go_function GTPase binding|GO:0051020|19135895|IPI  product GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1); GTP binding / GTPase/ channel regulator/ signal transducer  note G PROTEIN ALPHA SUBUNIT 1 (GP ALPHA 1); FUNCTIONS IN: GTP binding, channel regulator activity, GTPase activity, signal transducer activity; INVOLVED IN: in 15 processes; LOCATED IN: plasma membrane, endoplasmic reticulum membrane, heterotrimeric G-protein complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plant G-protein, alpha subunit (InterPro:IPR002976), Guanine nucleotide binding protein (G-protein), alpha subunit (InterPro:IPR001019), G protein alpha subunit, helical insertion (InterPro:IPR011025); BEST Arabidopsis thaliana protein match is: XLG3 (extra-large GTP-binding protein 3); guanyl nucleotide binding / signal transducer (TAIR:AT1G31930.2); Has 3027 Blast hits to 2968 proteins in 349 species: Archae - 0; Bacteria - 0; Metazoa - 2096; Fungi - 519; Plants - 194; Viruses - 0; Other Eukaryotes - 218 (source: NCBI BLink).  protein_id AT2G26300.1p  transcript_id AT2G26300.1  protein_id AT2G26300.1p  transcript_id AT2G26300.1  
At2g26310	chr2:011201770	0.0	W/11201770-11202176,11202246-11202480,11202608-11202683,11202769-11202871,11203006-11203074,11203276-11203312,11203402-11203476,11203563-11203614,11203691-11203735,11203822-11203919	AT2G26310.1  CDS  gene_syn T1D16.5, T1D16_5  go_process flavonoid biosynthetic process|GO:0009813||IEA  go_function chalcone isomerase activity|GO:0045430||IEA  go_component cellular_component|GO:0005575||ND  product chalcone isomerase  note chalcone isomerase; FUNCTIONS IN: chalcone isomerase activity; INVOLVED IN: flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Chalcone isomerase, subgroup (InterPro:IPR003466), Chalcone isomerase (InterPro:IPR016087); BEST Arabidopsis thaliana protein match is: chalcone isomerase (TAIR:AT3G63170.1); Has 65 Blast hits to 65 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 59; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G26310.1p  transcript_id AT2G26310.1  protein_id AT2G26310.1p  transcript_id AT2G26310.1  
At2g26320	chr2:011206055	0.0	C/11206055-11206287,11205389-11205485	AT2G26320.1  CDS  gene_syn AGAMOUS-LIKE 33, AGL33, T1D16.4, T1D16_4  gene AGL33  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL33 (AGAMOUS-LIKE 33); DNA binding / transcription factor  note AGAMOUS-LIKE 33 (AGL33); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL65 (AGAMOUS-LIKE 65); DNA binding / transcription factor (TAIR:AT1G18750.1); Has 3861 Blast hits to 3861 proteins in 490 species: Archae - 0; Bacteria - 0; Metazoa - 524; Fungi - 192; Plants - 3098; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT2G26320.1p  transcript_id AT2G26320.1  protein_id AT2G26320.1p  transcript_id AT2G26320.1  
At2g26330	chr2:011213817	0.0	C/11213817-11213895,11213332-11213470,11213159-11213230,11212983-11213054,11212820-11212891,11212658-11212729,11212508-11212579,11212360-11212431,11212205-11212276,11212043-11212111,11211886-11211957,11211738-11211809,11211578-11211649,11211417-11211488,11211277-11211348,11211118-11211189,11210920-11210991,11210766-11210837,11210608-11210679,11210450-11210521,11210217-11210285,11210050-11210121,11209898-11209971,11209687-11209815,11209255-11209602,11208808-11209178,11208367-11208723	AT2G26330.1  CDS  gene_syn ER, ERECTA, QRP1, QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, T1D16.3, T1D16_3  gene ER  function Homologous to receptor protein kinases. Involved in specification of organs originating from the shoot apical meristem. Contains a cytoplasmic protein kinase catalytic domain, a transmembrane region, and an extracellular leucine-rich repeat. ER has been identified as a quantitative trait locus for transpiration efficiency by influencing epidermal and mesophyll development, stomatal density and porosity of leaves. It has been implicated in resistance to the bacterium Ralstonia solanacearum and to the necrotrophic fungus Plectosphaerella cucumerina. Together with ERL1 and ERL2, ER governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes.  go_component mitochondrion|GO:0005739|14671022|IDA  go_process organ morphogenesis|GO:0009887|8624444|IMP  go_process leaf morphogenesis|GO:0009965|16007076|IMP  go_process stomatal complex morphogenesis|GO:0010103|16002616|IMP  go_process cell growth|GO:0016049|16007076|IMP  go_process regulation of cell adhesion|GO:0030155|16007076|IMP  go_process defense response to fungus|GO:0050832|15998304|IMP  go_process cell division|GO:0051301|16007076|IMP  go_function transmembrane receptor protein kinase activity|GO:0019199|8624444|ISS  product ER (ERECTA); transmembrane receptor protein kinase  note ERECTA (ER); FUNCTIONS IN: transmembrane receptor protein kinase activity; INVOLVED IN: in 7 processes; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ERL1 (ERECTA-LIKE 1); kinase (TAIR:AT5G62230.1); Has 161848 Blast hits to 101019 proteins in 2836 species: Archae - 85; Bacteria - 12874; Metazoa - 71286; Fungi - 7237; Plants - 48959; Viruses - 415; Other Eukaryotes - 20992 (source: NCBI BLink).  protein_id AT2G26330.1p  transcript_id AT2G26330.1  protein_id AT2G26330.1p  transcript_id AT2G26330.1  
At2g26340	chr2:011215254	0.0	W/11215254-11215482,11215609-11215657,11215759-11215829,11215919-11216013,11216092-11216159,11216231-11216480	AT2G26340.1  CDS  gene_syn T1D16.2, T1D16_2  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 22 Blast hits to 22 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G26340.1p  transcript_id AT2G26340.1  protein_id AT2G26340.1p  transcript_id AT2G26340.1  
At2g26350	chr2:011220235	0.0	C/11220235-11220415,11220105-11220136,11219940-11220029,11219763-11219857,11219494-11219683,11219330-11219399,11219181-11219259,11218958-11219091,11218612-11218706,11218116-11218192,11217767-11217869	AT2G26350.1  CDS  gene_syn ATPEX10, PEROXIN 10, PEX10, T9J22.2  gene PEX10  function Zinc-binding peroxisomal integral membrane protein (PEX10). Inserted directly from the cytosol into peroxisomes and is involved in importing proteins into the peroxisome. Required for embryogenesis.  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component peroxisome|GO:0005777|16169966|IDA  go_component endoplasmic reticulum|GO:0005783|16169966|IDA  go_component cytosol|GO:0005829|16169966|IDA  go_process fatty acid beta-oxidation|GO:0006635|17478547|IMP  go_process peroxisome organization|GO:0007031|12883010|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|14576288|IMP  go_process photorespiration|GO:0009853|17215364|IMP  go_process attachment of peroxisome to chloroplast|GO:0010381|17215364|IMP  go_process protein import into peroxisome matrix|GO:0016558|17478547|IMP  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product PEX10; protein binding / zinc ion binding  note PEX10; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: in 6 processes; LOCATED IN: cytosol, endoplasmic reticulum, peroxisome; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Pex, N-terminal (InterPro:IPR006845), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: RMA1; protein binding / ubiquitin-protein ligase/ zinc ion binding (TAIR:AT4G03510.2); Has 3613 Blast hits to 3603 proteins in 228 species: Archae - 0; Bacteria - 0; Metazoa - 2167; Fungi - 355; Plants - 500; Viruses - 93; Other Eukaryotes - 498 (source: NCBI BLink).  protein_id AT2G26350.1p  transcript_id AT2G26350.1  protein_id AT2G26350.1p  transcript_id AT2G26350.1  
At2g26355	chr2:011220708	0.0	W/11220708-11221535	AT2G26355.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G26360  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G26355.1  
At2g26360	chr2:011222859	0.0	C/11222859-11223160,11222683-11222788,11222481-11222599,11222321-11222399,11222001-11222234,11221603-11221926	AT2G26360.1  CDS  gene_syn T9J22.3, T9J22_3  go_component mitochondrial inner membrane|GO:0005743||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function binding|GO:0005488||ISS  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: mitochondrial substrate carrier family protein (TAIR:AT2G35800.1); Has 12173 Blast hits to 9052 proteins in 322 species: Archae - 0; Bacteria - 0; Metazoa - 6075; Fungi - 3363; Plants - 1727; Viruses - 0; Other Eukaryotes - 1008 (source: NCBI BLink).  protein_id AT2G26360.1p  transcript_id AT2G26360.1  protein_id AT2G26360.1p  transcript_id AT2G26360.1  
At2g26370	chr2:011224636	0.0	W/11224636-11224735,11225404-11225523,11225610-11225785,11225927-11226052	AT2G26370.1  CDS  gene_syn T9J22.4, T9J22_4  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MD-2-related lipid recognition domain-containing protein / ML domain-containing protein  note MD-2-related lipid recognition domain-containing protein / ML domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: MD-2-related lipid-recognition (InterPro:IPR003172); BEST Arabidopsis thaliana protein match is: MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (TAIR:AT5G23820.1); Has 35 Blast hits to 35 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G26370.1p  transcript_id AT2G26370.1  protein_id AT2G26370.1p  transcript_id AT2G26370.1  
At2g26380	chr2:011226615	0.0	C/11226615-11228057	AT2G26380.1  CDS  gene_syn T9J22.5, T9J22_5  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_process signal transduction|GO:0007165||ISS  go_function protein binding|GO:0005515|11751054|NAS  product disease resistance protein-related / LRR protein-related  note disease resistance protein-related / LRR protein-related; FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein-related / LRR protein-related (TAIR:AT1G33590.1); Has 44855 Blast hits to 18344 proteins in 723 species: Archae - 26; Bacteria - 2678; Metazoa - 13931; Fungi - 486; Plants - 24762; Viruses - 2; Other Eukaryotes - 2970 (source: NCBI BLink).  protein_id AT2G26380.1p  transcript_id AT2G26380.1  protein_id AT2G26380.1p  transcript_id AT2G26380.1  
At2g26390	chr2:011230111	0.0	C/11230111-11230491,11229087-11229875	AT2G26390.1  CDS  gene_syn T9J22.6, T9J22_6  go_function serine-type endopeptidase inhibitor activity|GO:0004867||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function serine-type endopeptidase inhibitor activity|GO:0004867||ISS  product serpin, putative / serine protease inhibitor, putative  note serpin, putative / serine protease inhibitor, putative; FUNCTIONS IN: serine-type endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, root, seed; EXPRESSED DURING: 4 anthesis, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protease inhibitor I4, serpin, plant (InterPro:IPR015554), Protease inhibitor I4, serpin (InterPro:IPR000215); BEST Arabidopsis thaliana protein match is: serine-type endopeptidase inhibitor (TAIR:AT2G25240.1); Has 4805 Blast hits to 4753 proteins in 328 species: Archae - 52; Bacteria - 217; Metazoa - 3726; Fungi - 1; Plants - 220; Viruses - 424; Other Eukaryotes - 165 (source: NCBI BLink).  protein_id AT2G26390.1p  transcript_id AT2G26390.1  protein_id AT2G26390.1p  transcript_id AT2G26390.1  
At2g26400	chr2:011233257	0.0	C/11233257-11233274,11233057-11233168,11232883-11232977,11232627-11232741,11232415-11232539,11232240-11232310,11232058-11232121	AT2G26400.1  CDS  gene_syn ACIREDUCTONE DIOXYGENASE, ACIREDUCTONE DIOXYGENASE 3, ARD, ATARD3, T9J22.7, T9J22_7  gene ATARD3  function Encodes a protein predicted to belong to the acireductone dioxygenase (ARD/ARD )family.  go_process methionine salvage|GO:0019509||IEA  go_component cellular_component|GO:0005575||ND  go_function heteroglycan binding|GO:0010297|16648215|NAS  go_function acireductone dioxygenase [iron(II)-requiring] activity|GO:0010309|17144895|ISS  go_function metal ion binding|GO:0046872||ISS  product ATARD3 (ACIREDUCTONE DIOXYGENASE 3); acireductone dioxygenase [iron(II)-requiring]/ heteroglycan binding / metal ion binding  note ACIREDUCTONE DIOXYGENASE 3 (ATARD3); FUNCTIONS IN: acireductone dioxygenase [iron(II)-requiring] activity, heteroglycan binding, metal ion binding; INVOLVED IN: methionine salvage; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acireductone dioxygenase, ARD (InterPro:IPR004313), Cupin, RmlC-type (InterPro:IPR011051), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: acireductone dioxygenase [iron(II)-requiring]/ metal ion binding (TAIR:AT4G14710.2); Has 1008 Blast hits to 1004 proteins in 301 species: Archae - 0; Bacteria - 334; Metazoa - 125; Fungi - 85; Plants - 390; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT2G26400.1p  transcript_id AT2G26400.1  protein_id AT2G26400.1p  transcript_id AT2G26400.1  
At2g26410	chr2:011236651	0.0	C/11236651-11236719,11236119-11236535,11235792-11236016,11235478-11235600,11234651-11235400	AT2G26410.1  CDS  gene_syn IQ-domain 4, Iqd4, T9J22.8, T9J22_8  gene Iqd4  go_function calmodulin binding|GO:0005516||ISS  product Iqd4 (IQ-domain 4); calmodulin binding  note IQ-domain 4 (Iqd4); FUNCTIONS IN: calmodulin binding; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQD3 (IQ-domain 3); calmodulin binding (TAIR:AT3G52290.1); Has 9039 Blast hits to 4809 proteins in 457 species: Archae - 16; Bacteria - 954; Metazoa - 2412; Fungi - 724; Plants - 2610; Viruses - 807; Other Eukaryotes - 1516 (source: NCBI BLink).  protein_id AT2G26410.1p  transcript_id AT2G26410.1  protein_id AT2G26410.1p  transcript_id AT2G26410.1  
At2g26420	chr2:011241056	0.0	C/11241056-11242239,11240814-11240979,11240627-11240737,11240223-11240532,11240101-11240134,11239434-11239746	AT2G26420.1  CDS  gene_syn 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 3, PIP5K3, T9J22.9, T9J22_9  gene PIP5K3  function Encodes a phosphatidylinositol-4-phosphate 5-kinase. Exclusively expressed in roots. Essential for root hair growth.  go_component cytoplasm|GO:0005737|18281506|IDA  go_component plasma membrane|GO:0005886|18178770|IDA  go_component apical plasma membrane|GO:0016324|18281506|IDA  go_process root hair elongation|GO:0048767|18178770|IMP  go_process root hair cell tip growth|GO:0048768|18281506|IMP  go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308|18178770|IDA  go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308||ISS  product PIP5K3 (1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 3); 1-phosphatidylinositol-4-phosphate 5-kinase  note 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 3 (PIP5K3); FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity; INVOLVED IN: root hair cell tip growth, root hair elongation; LOCATED IN: apical plasma membrane, plasma membrane, cytoplasm; EXPRESSED IN: root cortex, root epidermis, root hair, root; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, plant (InterPro:IPR017163), MORN motif (InterPro:IPR003409), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: ATPIP5K1 (PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 1); 1-phosphatidylinositol-4-phosphate 5-kinase/ actin filament binding / actin monomer binding / phosphatidylinositol phosphate kinase (TAIR:AT1G21980.1); Has 22833 Blast hits to 6375 proteins in 393 species: Archae - 0; Bacteria - 2400; Metazoa - 3580; Fungi - 282; Plants - 734; Viruses - 0; Other Eukaryotes - 15837 (source: NCBI BLink).  protein_id AT2G26420.1p  transcript_id AT2G26420.1  protein_id AT2G26420.1p  transcript_id AT2G26420.1  
At2g26430	chr2:011245187	0.0	C/11245187-11245255,11244925-11245065,11244624-11244793,11244128-11244401,11243433-11243864	AT2G26430.2  CDS  gene_syn ARGININE-RICH CYCLIN 1, ATRCY1, RCY1, T9J22.10, T9J22_10  gene RCY1  function Encodes an ania-6a type arginine-rich cyclin which confers tolerance to LiCl and NaCl when expressed in yeast.  go_process response to salt stress|GO:0009651|12047626|IDA  go_process regulation of transcription|GO:0045449|12047626|TAS  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase regulator activity|GO:0016538||ISS  product RCY1 (ARGININE-RICH CYCLIN 1); cyclin-dependent protein kinase regulator  note ARGININE-RICH CYCLIN 1 (RCY1); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle, response to salt stress, regulation of transcription; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin L (InterPro:IPR017060), Cyclin-like (InterPro:IPR011028), Transcription regulator cyclin (InterPro:IPR015429), Cyclin-related (InterPro:IPR013763), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: cyclin family protein (TAIR:AT5G45190.2); Has 12824 Blast hits to 6807 proteins in 280 species: Archae - 12; Bacteria - 475; Metazoa - 7322; Fungi - 1822; Plants - 1047; Viruses - 14; Other Eukaryotes - 2132 (source: NCBI BLink).  protein_id AT2G26430.2p  transcript_id AT2G26430.2  protein_id AT2G26430.2p  transcript_id AT2G26430.2  
At2g26430	chr2:011245187	0.0	C/11245187-11245255,11244925-11245065,11244624-11244793,11244128-11244401,11243433-11243864	AT2G26430.3  CDS  gene_syn ARGININE-RICH CYCLIN 1, ATRCY1, RCY1, T9J22.10, T9J22_10  gene RCY1  function Encodes an ania-6a type arginine-rich cyclin which confers tolerance to LiCl and NaCl when expressed in yeast.  go_process response to salt stress|GO:0009651|12047626|IDA  go_process regulation of transcription|GO:0045449|12047626|TAS  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase regulator activity|GO:0016538||ISS  product RCY1 (ARGININE-RICH CYCLIN 1); cyclin-dependent protein kinase regulator  note ARGININE-RICH CYCLIN 1 (RCY1); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle, response to salt stress, regulation of transcription; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin L (InterPro:IPR017060), Cyclin-like (InterPro:IPR011028), Transcription regulator cyclin (InterPro:IPR015429), Cyclin-related (InterPro:IPR013763), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: cyclin family protein (TAIR:AT5G45190.2); Has 12824 Blast hits to 6807 proteins in 280 species: Archae - 12; Bacteria - 475; Metazoa - 7322; Fungi - 1822; Plants - 1047; Viruses - 14; Other Eukaryotes - 2132 (source: NCBI BLink).  protein_id AT2G26430.3p  transcript_id AT2G26430.3  protein_id AT2G26430.3p  transcript_id AT2G26430.3  
At2g26430	chr2:011245353	0.0	C/11245353-11245504,11245187-11245268,11244925-11245065,11244624-11244793,11244128-11244401,11243433-11243864	AT2G26430.1  CDS  gene_syn ARGININE-RICH CYCLIN 1, ATRCY1, RCY1, T9J22.10, T9J22_10  gene RCY1  function Encodes an ania-6a type arginine-rich cyclin which confers tolerance to LiCl and NaCl when expressed in yeast.  go_process response to salt stress|GO:0009651|12047626|IDA  go_process regulation of transcription|GO:0045449|12047626|TAS  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase regulator activity|GO:0016538||ISS  product RCY1 (ARGININE-RICH CYCLIN 1); cyclin-dependent protein kinase regulator  note ARGININE-RICH CYCLIN 1 (RCY1); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle, response to salt stress, regulation of transcription; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin L (InterPro:IPR017060), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Transcription regulator cyclin (InterPro:IPR015429), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: cyclin family protein (TAIR:AT5G45190.1); Has 12984 Blast hits to 6940 proteins in 288 species: Archae - 14; Bacteria - 475; Metazoa - 7382; Fungi - 1864; Plants - 1075; Viruses - 14; Other Eukaryotes - 2160 (source: NCBI BLink).  protein_id AT2G26430.1p  transcript_id AT2G26430.1  protein_id AT2G26430.1p  transcript_id AT2G26430.1  
At2g26440	chr2:011247407	0.0	W/11247407-11248361,11248719-11249407	AT2G26440.1  CDS  gene_syn T9J22.11, T9J22_11  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase inhibitor (InterPro:IPR006501), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: ATPMEPCRB; pectinesterase (TAIR:AT4G02330.1); Has 1390 Blast hits to 1360 proteins in 216 species: Archae - 0; Bacteria - 311; Metazoa - 1; Fungi - 125; Plants - 953; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G26440.1p  transcript_id AT2G26440.1  protein_id AT2G26440.1p  transcript_id AT2G26440.1  
At2g26450	chr2:011251279	0.0	W/11251279-11252264,11252375-11252535,11252749-11253446	AT2G26450.1  CDS  gene_syn T9J22.12, T9J22_12  go_component cell wall|GO:0005618||IEA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT4G33230.1); Has 1480 Blast hits to 1433 proteins in 226 species: Archae - 0; Bacteria - 312; Metazoa - 5; Fungi - 138; Plants - 1022; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G26450.1p  transcript_id AT2G26450.1  protein_id AT2G26450.1p  transcript_id AT2G26450.1  
At2g26455	chr2:011253700	0.0	C/11253700-11254930	AT2G26455.1  pseudogenic_transcript  pseudo  note pseudogene, similar to Ubiquitin conjugating enzyme 7 interacting protein 4 (UbcM4- interacting protein 4) (RING finger protein 144). (Mouse), contains a Prosite:PS00518: Zinc finger, C3HC4 type (RING finger), signature and Pfam:PF01485 IBR domain; blastp match of 25% identity and 5.7e-18 P-value to SP|Q925F3|U7I4_MOUSE Ubiquitin conjugating enzyme 7 interacting protein 4 (UbcM4- interacting protein 4) (RING finger protein 144). (Mouse) {Mus musculus}  
At2g26460	chr2:011258867	0.0	C/11258867-11258913,11258635-11258775,11258490-11258539,11258298-11258412,11258174-11258222,11257983-11258072,11257365-11257433,11256834-11256957,11255946-11256352,11255419-11255802,11255049-11255330	AT2G26460.1  CDS  gene_syn T9J22.13, T9J22_13  go_component nucleus|GO:0005634||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product RED family protein  note RED family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RED-like, N-terminal (InterPro:IPR012916), RED-like, C-terminal (InterPro:IPR012492); Has 352 Blast hits to 259 proteins in 108 species: Archae - 0; Bacteria - 2; Metazoa - 220; Fungi - 53; Plants - 31; Viruses - 3; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT2G26460.1p  transcript_id AT2G26460.1  protein_id AT2G26460.1p  transcript_id AT2G26460.1  
At2g26470	chr2:011262268	0.0	C/11262268-11262362,11262018-11262177,11261810-11261895,11261310-11261422,11260954-11261019,11260381-11260490,11260235-11260300,11259316-11260083	AT2G26470.1  CDS  gene_syn T9J22.14, T9J22_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF159 (InterPro:IPR003738); Has 2696 Blast hits to 2681 proteins in 578 species: Archae - 27; Bacteria - 1085; Metazoa - 133; Fungi - 73; Plants - 27; Viruses - 12; Other Eukaryotes - 1339 (source: NCBI BLink).  protein_id AT2G26470.1p  transcript_id AT2G26470.1  protein_id AT2G26470.1p  transcript_id AT2G26470.1  
At2g26480	chr2:011263963	0.0	W/11263963-11264422,11264674-11265572	AT2G26480.1  CDS  gene_syn T9J22.15, T9J22_15, UDP-GLUCOSYL TRANSFERASE 76D1, UGT76D1  gene UGT76D1  go_process metabolic process|GO:0008152||IEA  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function quercetin 7-O-glucosyltransferase activity|GO:0080044|15352060|IDA  product UGT76D1 (UDP-GLUCOSYL TRANSFERASE 76D1); UDP-glycosyltransferase/ quercetin 7-O-glucosyltransferase/ transferase, transferring glycosyl groups  note UDP-GLUCOSYL TRANSFERASE 76D1 (UGT76D1); FUNCTIONS IN: quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, LP.02 two leaves visible, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT76E12 (UDP-GLUCOSYL TRANSFERASE 76E12); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ quercetin 7-O-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT3G46660.1); Has 4611 Blast hits to 4593 proteins in 313 species: Archae - 0; Bacteria - 181; Metazoa - 1628; Fungi - 9; Plants - 2664; Viruses - 108; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT2G26480.1p  transcript_id AT2G26480.1  protein_id AT2G26480.1p  transcript_id AT2G26480.1  
At2g26490	chr2:011268035	0.0	W/11268035-11269432	AT2G26490.1  CDS  gene_syn T9J22.16, T9J22_16  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: heterotrimeric G-protein complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT4G34380.1); Has 28170 Blast hits to 14028 proteins in 472 species: Archae - 22; Bacteria - 3610; Metazoa - 12467; Fungi - 5731; Plants - 2382; Viruses - 0; Other Eukaryotes - 3958 (source: NCBI BLink).  protein_id AT2G26490.1p  transcript_id AT2G26490.1  protein_id AT2G26490.1p  transcript_id AT2G26490.1  
At2g26500	chr2:011270370	0.0	W/11270370-11270595,11270692-11270747	AT2G26500.3  CDS  gene_syn T9J22.17, T9J22_17  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_function plastoquinol-plastocyanin reductase activity|GO:0009496||ISS  product cytochrome b6f complex subunit (petM), putative  note cytochrome b6f complex subunit (petM), putative; FUNCTIONS IN: plastoquinol-plastocyanin reductase activity; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 15 Blast hits to 15 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G26500.3p  transcript_id AT2G26500.3  protein_id AT2G26500.3p  transcript_id AT2G26500.3  
At2g26500	chr2:011270370	0.0	W/11270370-11270747	AT2G26500.1  CDS  gene_syn T9J22.17, T9J22_17  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_function plastoquinol-plastocyanin reductase activity|GO:0009496||ISS  product cytochrome b6f complex subunit (petM), putative  note cytochrome b6f complex subunit (petM), putative; FUNCTIONS IN: plastoquinol-plastocyanin reductase activity; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PetM of cytochrome b6/f complex subunit 7 (InterPro:IPR012595); Has 27 Blast hits to 27 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G26500.1p  transcript_id AT2G26500.1  protein_id AT2G26500.1p  transcript_id AT2G26500.1  
At2g26500	chr2:011270370	0.0	W/11270370-11270747	AT2G26500.2  CDS  gene_syn T9J22.17, T9J22_17  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_function plastoquinol-plastocyanin reductase activity|GO:0009496||ISS  product cytochrome b6f complex subunit (petM), putative  note cytochrome b6f complex subunit (petM), putative; FUNCTIONS IN: plastoquinol-plastocyanin reductase activity; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PetM of cytochrome b6/f complex subunit 7 (InterPro:IPR012595); Has 27 Blast hits to 27 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G26500.2p  transcript_id AT2G26500.2  protein_id AT2G26500.2p  transcript_id AT2G26500.2  
At2g26510	chr2:011274118	0.0	W/11274118-11274280,11274841-11274938,11275034-11275210,11275295-11275395,11275483-11275558,11275644-11275703,11275791-11275975,11276062-11276158,11276258-11276344,11276449-11276507,11276603-11276694,11276789-11276866,11276958-11277118,11277243-11277464	AT2G26510.1  CDS  gene_syn PDE135, T9J22.18, T9J22_18, pigment defective embryo 135  gene PDE135  function permease  go_component plasma membrane|GO:0005886|17317660|IDA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_function transmembrane transporter activity|GO:0022857||ISS  product PDE135 (pigment defective embryo 135); transmembrane transporter  note pigment defective embryo 135 (PDE135); FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xanthine/uracil permease (InterPro:IPR006042), Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: xanthine/uracil permease family protein (TAIR:AT2G34190.1); Has 4837 Blast hits to 4820 proteins in 929 species: Archae - 35; Bacteria - 3449; Metazoa - 312; Fungi - 88; Plants - 294; Viruses - 1; Other Eukaryotes - 658 (source: NCBI BLink).  protein_id AT2G26510.1p  transcript_id AT2G26510.1  protein_id AT2G26510.1p  transcript_id AT2G26510.1  
At2g26511	chr2:011277789	0.0	W/11277789-11277890	AT2G26511.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G26511.1p  transcript_id AT2G26511.1  protein_id AT2G26511.1p  transcript_id AT2G26511.1  
At2g26520	chr2:011280280	0.0	W/11280280-11280717	AT2G26520.1  CDS  gene_syn T9J22.19, T9J22_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57500.1); Has 23 Blast hits to 23 proteins in 7 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G26520.1p  transcript_id AT2G26520.1  protein_id AT2G26520.1p  transcript_id AT2G26520.1  
At2g26530	chr2:011283036	0.0	C/11283036-11283989	AT2G26530.1  CDS  gene_syn AR781, T9J22.20, T9J22_20  gene AR781  function unknown function  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product AR781  note AR781; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1645 (InterPro:IPR012442); BEST Arabidopsis thaliana protein match is: calmodulin-binding protein (TAIR:AT2G15760.1); Has 102 Blast hits to 102 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G26530.1p  transcript_id AT2G26530.1  protein_id AT2G26530.1p  transcript_id AT2G26530.1  
At2g26530	chr2:011283602	0.0	C/11283602-11283989,11283036-11283520	AT2G26530.2  CDS  gene_syn AR781, T9J22.20, T9J22_20  gene AR781  function unknown function  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product AR781  note AR781; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1645 (InterPro:IPR012442); BEST Arabidopsis thaliana protein match is: calmodulin-binding protein (TAIR:AT2G15760.1); Has 100 Blast hits to 100 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G26530.2p  transcript_id AT2G26530.2  protein_id AT2G26530.2p  transcript_id AT2G26530.2  
At2g26540	chr2:011289976	0.0	C/11289976-11290224,11289800-11289887,11289577-11289643,11289195-11289313,11288719-11288814,11288372-11288427,11288119-11288204,11287867-11288001,11287666-11287735	AT2G26540.1  CDS  gene_syn HEMD, T9J22.21, T9J22_21  gene HEMD  go_component chloroplast|GO:0009507|18431481|IDA  go_process tetrapyrrole biosynthetic process|GO:0033014||IEA  go_function uroporphyrinogen-III synthase activity|GO:0004852||IEA  go_process porphyrin biosynthetic process|GO:0006779||ISS  go_function uroporphyrinogen-III synthase activity|GO:0004852||ISS  product HEMD; uroporphyrinogen-III synthase  note HEMD; FUNCTIONS IN: uroporphyrinogen-III synthase activity; INVOLVED IN: tetrapyrrole biosynthetic process, porphyrin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetrapyrrole biosynthesis, uroporphyrinogen III synthase (InterPro:IPR003754); Has 608 Blast hits to 608 proteins in 282 species: Archae - 15; Bacteria - 496; Metazoa - 0; Fungi - 1; Plants - 20; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT2G26540.1p  transcript_id AT2G26540.1  protein_id AT2G26540.1p  transcript_id AT2G26540.1  
At2g26547	chr2:011291327	0.0	C/11291327-11291443	AT2G26547.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G26547.1p  transcript_id AT2G26547.1  protein_id AT2G26547.1p  transcript_id AT2G26547.1  
At2g26550	chr2:011292952	0.0	C/11292952-11293426,11292651-11292874,11292436-11292517,11292265-11292347,11291761-11291868,11291584-11291676	AT2G26550.1  CDS  gene_syn HEME OXYGENASE 2, HO2, T9J22.22, T9J22_22  gene HO2  function encodes a heme oxygenase that catalyzes the oxidation of heme to biliverdin IXalpha, CO and Fe(2+), a committed step in the biosynthesis of the phytochrome chromophore phytochromobilin.  go_component chloroplast|GO:0009507||IEA  go_process heme oxidation|GO:0006788||ISS  go_process phytochromobilin biosynthetic process|GO:0010024|11402195|IMP  go_function heme oxygenase (decyclizing) activity|GO:0004392|11402195|ISS  go_function heme oxygenase (decyclizing) activity|GO:0004392|16428602|IDA  go_function heme oxygenase (decyclizing) activity|GO:0004392||ISS  product HO2 (HEME OXYGENASE 2); heme oxygenase (decyclizing)  note HEME OXYGENASE 2 (HO2); FUNCTIONS IN: heme oxygenase (decyclizing) activity; INVOLVED IN: heme oxidation, phytochromobilin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem oxygenase-like, multi-helical (InterPro:IPR016084), Haem oxygenase (decyclizing), plant (InterPro:IPR016951); BEST Arabidopsis thaliana protein match is: TED4 (REVERSAL OF THE DET PHENOTYPE 4); heme oxygenase (decyclizing) (TAIR:AT2G26670.1); Has 290 Blast hits to 289 proteins in 71 species: Archae - 0; Bacteria - 28; Metazoa - 114; Fungi - 13; Plants - 93; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT2G26550.1p  transcript_id AT2G26550.1  protein_id AT2G26550.1p  transcript_id AT2G26550.1  
At2g26560	chr2:011295571	0.0	C/11295571-11295708,11295119-11295487,11294871-11295032,11294340-11294642,11294087-11294259,11293912-11293990	AT2G26560.1  CDS  gene_syn PATATIN-LIKE PROTEIN 2, PHOSPHOLIPASE A 2A, PLA IIA, PLA2A, PLP2, T9J22.23, T9J22_23  gene PLA2A  function encodes a lipid acyl hydrolase with wide substrate specificity that accumulates upon infection by fungal and bacterial pathogens. Protein is localized in the cytoplasm in healthy leaves, and in membranes in infected cells.  go_process response to cadmium ion|GO:0046686|17075075|IEP  go_component cytoplasm|GO:0005737|16297072|IDA  go_component membrane|GO:0016020|16297072|IDA  go_process lipid metabolic process|GO:0006629|16297072|IDA  go_process plant-type hypersensitive response|GO:0009626|16297072|IEP  go_process plant-type hypersensitive response|GO:0009626|16297072|IMP  go_function lipase activity|GO:0016298|16297072|IDA  go_function nutrient reservoir activity|GO:0045735||ISS  product PLA2A (PHOSPHOLIPASE A 2A); lipase/ nutrient reservoir  note PHOSPHOLIPASE A 2A (PLA2A); FUNCTIONS IN: lipase activity, nutrient reservoir activity; INVOLVED IN: response to cadmium ion, plant-type hypersensitive response, lipid metabolic process; LOCATED IN: membrane, cytoplasm; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: patatin, putative (TAIR:AT4G37070.2); Has 1577 Blast hits to 1575 proteins in 266 species: Archae - 0; Bacteria - 324; Metazoa - 226; Fungi - 128; Plants - 613; Viruses - 0; Other Eukaryotes - 286 (source: NCBI BLink).  protein_id AT2G26560.1p  transcript_id AT2G26560.1  protein_id AT2G26560.1p  transcript_id AT2G26560.1  
At2g26570	chr2:011299565	0.0	W/11299565-11300152,11300241-11302076	AT2G26570.1  CDS  gene_syn T9J22.24, T9J22_24  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G33390.1); Has 116898 Blast hits to 58103 proteins in 2191 species: Archae - 1417; Bacteria - 21958; Metazoa - 54071; Fungi - 9153; Plants - 5267; Viruses - 512; Other Eukaryotes - 24520 (source: NCBI BLink).  protein_id AT2G26570.1p  transcript_id AT2G26570.1  protein_id AT2G26570.1p  transcript_id AT2G26570.1  
At2g26580	chr2:011306668	0.0	C/11306668-11306739,11305630-11305749,11304873-11304981,11304733-11304781,11304551-11304626,11303923-11303991	AT2G26580.1  CDS  gene_syn T9J22.25, T9J22_25, YAB5, YABBY5  gene YAB5  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product YAB5 (YABBY5); transcription factor  note YABBY5 (YAB5); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: YAB2 (YABBY2); transcription factor (TAIR:AT1G08465.1); Has 343 Blast hits to 332 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 331; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT2G26580.1p  transcript_id AT2G26580.1  protein_id AT2G26580.1p  transcript_id AT2G26580.1  
At2g26580	chr2:011306668	0.0	C/11306668-11306739,11305630-11305749,11304873-11304981,11304733-11304781,11304551-11304626,11303923-11303991	AT2G26580.2  CDS  gene_syn T9J22.25, T9J22_25, YAB5, YABBY5  gene YAB5  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product YAB5 (YABBY5); transcription factor  note YABBY5 (YAB5); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: YAB2 (YABBY2); transcription factor (TAIR:AT1G08465.1); Has 343 Blast hits to 332 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 331; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT2G26580.2p  transcript_id AT2G26580.2  protein_id AT2G26580.2p  transcript_id AT2G26580.2  
At2g26590	chr2:011314685	0.0	C/11314685-11314717,11314504-11314596,11314252-11314311,11313898-11314011,11313722-11313788,11312803-11312881,11312244-11312365,11312133-11312156,11311833-11311927,11311462-11311539,11311337-11311391,11311182-11311264	AT2G26590.1  CDS  gene_syn T9J22.26, T9J22_26  go_component nucleus|GO:0005634||IEA  go_component cytoplasm|GO:0005737||IEA  go_component integral to membrane|GO:0016021||ISS  go_process cell adhesion|GO:0007155||ISS  go_function molecular_function|GO:0003674||ND  product adhesion regulating molecule family  note adhesion regulating molecule family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell adhesion; LOCATED IN: integral to membrane, nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adhesion regulating molecule (InterPro:IPR006773); Has 388 Blast hits to 308 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 269; Fungi - 45; Plants - 25; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT2G26590.1p  transcript_id AT2G26590.1  protein_id AT2G26590.1p  transcript_id AT2G26590.1  
At2g26590	chr2:011314685	0.0	C/11314685-11314717,11314504-11314596,11314252-11314311,11313898-11314011,11313722-11313788,11312803-11312881,11312244-11312365,11312133-11312156,11311833-11311927,11311462-11311539,11311337-11311391,11311182-11311264	AT2G26590.2  CDS  gene_syn T9J22.26, T9J22_26  go_component nucleus|GO:0005634||IEA  go_component cytoplasm|GO:0005737||IEA  go_component integral to membrane|GO:0016021||ISS  go_process cell adhesion|GO:0007155||ISS  go_function molecular_function|GO:0003674||ND  product adhesion regulating molecule family  note adhesion regulating molecule family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell adhesion; LOCATED IN: integral to membrane, nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adhesion regulating molecule (InterPro:IPR006773); Has 388 Blast hits to 308 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 269; Fungi - 45; Plants - 25; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT2G26590.2p  transcript_id AT2G26590.2  protein_id AT2G26590.2p  transcript_id AT2G26590.2  
At2g26590	chr2:011314685	0.0	C/11314685-11314717,11314504-11314596,11314252-11314311,11313898-11314011,11313722-11313788,11312803-11312881,11312244-11312365,11312133-11312156,11311833-11311927,11311462-11311539,11311337-11311391,11311182-11311264	AT2G26590.3  CDS  gene_syn T9J22.26, T9J22_26  go_component nucleus|GO:0005634||IEA  go_component cytoplasm|GO:0005737||IEA  go_component integral to membrane|GO:0016021||ISS  go_process cell adhesion|GO:0007155||ISS  go_function molecular_function|GO:0003674||ND  product adhesion regulating molecule family  note adhesion regulating molecule family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell adhesion; LOCATED IN: integral to membrane, nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adhesion regulating molecule (InterPro:IPR006773); Has 388 Blast hits to 308 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 269; Fungi - 45; Plants - 25; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT2G26590.3p  transcript_id AT2G26590.3  protein_id AT2G26590.3p  transcript_id AT2G26590.3  
At2g26600	chr2:011316727	0.0	W/11316727-11316793,11316999-11318038,11318156-11318215	AT2G26600.1  CDS  gene_syn T9J22.27, T9J22_27  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT3G15800.1); Has 1388 Blast hits to 1378 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 1381; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G26600.1p  transcript_id AT2G26600.1  protein_id AT2G26600.1p  transcript_id AT2G26600.1  
At2g26600	chr2:011317214	0.0	W/11317214-11318038,11318156-11318215	AT2G26600.2  CDS  gene_syn T9J22.27, T9J22_27  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT3G15800.1); Has 1369 Blast hits to 1360 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 1362; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G26600.2p  transcript_id AT2G26600.2  protein_id AT2G26600.2p  transcript_id AT2G26600.2  
At2g26610	chr2:011318771	0.0	W/11318771-11319723,11319808-11320171,11320253-11320340,11320420-11320601,11320693-11320829,11320897-11320963,11321050-11321209,11321281-11321395,11321478-11321553,11321623-11321805,11321968-11322128,11322211-11322304,11322391-11322574,11322685-11322947,11323029-11323150,11323228-11323372,11323456-11323548,11323632-11323705,11323784-11323837,11323940-11324174	AT2G26610.1  CDS  gene_syn T9J22.28, T9J22_28  go_component chloroplast|GO:0009507||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G33530.1); Has 123 Blast hits to 101 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT2G26610.1p  transcript_id AT2G26610.1  protein_id AT2G26610.1p  transcript_id AT2G26610.1  
At2g26620	chr2:011326692	0.0	C/11326692-11326835,11326182-11326493,11325486-11326010,11325163-11325390	AT2G26620.1  CDS  gene_syn T9J22.29, T9J22_29  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT2G15470.1); Has 2386 Blast hits to 2377 proteins in 299 species: Archae - 2; Bacteria - 449; Metazoa - 8; Fungi - 966; Plants - 886; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT2G26620.1p  transcript_id AT2G26620.1  protein_id AT2G26620.1p  transcript_id AT2G26620.1  
At2g26630	chr2:011327493	0.0	W/11327493-11328727	AT2G26630.1  mRNA_TE_gene  pseudo  gene_syn T9J22.30, T9J22_30  note Transposable element gene, transposase IS4 family protein, contains Pfam profile: PF01609 transposase DDE domain  
At2g26640	chr2:011330094	0.0	W/11330094-11331623	AT2G26640.1  CDS  gene_syn 3-KETOACYL-COA SYNTHASE 11, F18A8.1, F18A8_1, KCS11  gene KCS11  function Encodes KCS11, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).  go_component membrane|GO:0016020||IEA  go_function catalytic activity|GO:0003824||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_process response to osmotic stress|GO:0006970|18465198|IEP  go_process response to cold|GO:0009409|18465198|IEP  go_process response to light stimulus|GO:0009416|18465198|IEP  product KCS11 (3-KETOACYL-COA SYNTHASE 11); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups  note 3-KETOACYL-COA SYNTHASE 11 (KCS11); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: response to light stimulus, response to cold, response to osmotic stress; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038), Chalcone and stilbene synthases, C-terminal (InterPro:IPR012328); BEST Arabidopsis thaliana protein match is: KCS20 (3-KETOACYL-COA SYNTHASE 20); fatty acid elongase (TAIR:AT5G43760.1); Has 2421 Blast hits to 2416 proteins in 567 species: Archae - 0; Bacteria - 877; Metazoa - 0; Fungi - 2; Plants - 1400; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink).  protein_id AT2G26640.1p  transcript_id AT2G26640.1  protein_id AT2G26640.1p  transcript_id AT2G26640.1  
At2g26650	chr2:011336272	0.0	C/11336272-11336444,11334850-11335206,11334723-11334780,11334297-11334614,11333970-11334215,11333782-11333880,11333667-11333699,11333358-11333543,11333061-11333255,11332891-11332966,11331965-11332797	AT2G26650.1  CDS  gene_syn AKT1, ARABIDOPSIS K TRANSPORTER 1, ATAKT1, F18A8.2, F18A8_2, POTASSIUM TRANSPORTER  gene AKT1  function Shaker-like inward rectifying potassium channel predominantly expressed in predominantly in root hairs and root endodermis.  go_component plasma membrane|GO:0005886|11500563|TAS  go_process potassium ion transport|GO:0006813|8798465|IC  go_process response to salt stress|GO:0009651|15347782|IMP  go_process root hair elongation|GO:0048767|12554721|IMP  go_function inward rectifier potassium channel activity|GO:0005242|16895985|IDA  go_function inward rectifier potassium channel activity|GO:0005242|8798465|IDA  go_function inward rectifier potassium channel activity|GO:0005242||ISS  go_function cyclic nucleotide binding|GO:0030551||ISS  product AKT1 (ARABIDOPSIS K TRANSPORTER 1); cyclic nucleotide binding / inward rectifier potassium channel  note ARABIDOPSIS K TRANSPORTER 1 (AKT1); FUNCTIONS IN: cyclic nucleotide binding, inward rectifier potassium channel activity; INVOLVED IN: response to salt stress, potassium ion transport, root hair elongation; LOCATED IN: plasma membrane; EXPRESSED IN: hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Cyclic nucleotide-binding, conserved site (InterPro:IPR018488), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: SPIK (Shaker Pollen Inward K+ channel); cyclic nucleotide binding / inward rectifier potassium channel/ potassium channel (TAIR:AT2G25600.1); Has 70720 Blast hits to 28592 proteins in 1175 species: Archae - 101; Bacteria - 5433; Metazoa - 37010; Fungi - 5294; Plants - 2259; Viruses - 1176; Other Eukaryotes - 19447 (source: NCBI BLink).  protein_id AT2G26650.1p  transcript_id AT2G26650.1  protein_id AT2G26650.1p  transcript_id AT2G26650.1  
At2g26660	chr2:011338932	0.0	W/11338932-11339222,11339652-11339778,11340258-11340703	AT2G26660.1  CDS  gene_syn ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, ATSPX2, F18A8.3, F18A8_3, SPX DOMAIN GENE 2, SPX2  gene SPX2  go_component nucleus|GO:0005634|18315545|IDA  go_process cellular response to phosphate starvation|GO:0016036|18315545|IEP  go_function molecular_function|GO:0003674||ND  product SPX2 (SPX DOMAIN GENE 2)  note SPX DOMAIN GENE 2 (SPX2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cellular response to phosphate starvation; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: SPX1 (SPX DOMAIN GENE 1) (TAIR:AT5G20150.1); Has 816 Blast hits to 812 proteins in 153 species: Archae - 0; Bacteria - 2; Metazoa - 225; Fungi - 334; Plants - 177; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT2G26660.1p  transcript_id AT2G26660.1  protein_id AT2G26660.1p  transcript_id AT2G26660.1  
At2g26670	chr2:011341816	0.0	W/11341816-11342095,11342895-11343118,11343194-11343394	AT2G26670.2  CDS  gene_syn ARABIDOPSIS THALIANA HEME OXYGENASE 1, ATHO1, F18A8.4, F18A8_4, GENOMES UNCOUPLED 2, GUN2, HEME OXYGENASE, HEME OXYGENASE 1, HEME OXYGENASE 6, HO1, HY6, PLASTID HEME OXYGENASE, REVERSAL OF THE DET PHENOTYPE 4, TED4  gene TED4  function Encodes a plastid heme oxygenase necessary for phytochrome chromophore biosynthesis and for coupling the expression of some nuclear genes to the functional state of the chloroplast.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|10072395|IDA  go_process heme oxidation|GO:0006788||ISS  go_process red, far-red light phototransduction|GO:0009585||IMP  go_process chloroplast-nucleus signaling pathway|GO:0010019|7690685|IMP  go_process phytochromobilin biosynthetic process|GO:0010024|16428602|IDA  go_process regulation of meristem growth|GO:0010075|18424613|IGI  go_function heme oxygenase (decyclizing) activity|GO:0004392|16428602|IDA  product TED4 (REVERSAL OF THE DET PHENOTYPE 4); heme oxygenase (decyclizing)  note REVERSAL OF THE DET PHENOTYPE 4 (TED4); FUNCTIONS IN: heme oxygenase (decyclizing) activity; INVOLVED IN: regulation of meristem growth, chloroplast-nucleus signaling pathway, red, far-red light phototransduction, heme oxidation, phytochromobilin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem oxygenase-like, multi-helical (InterPro:IPR016084); BEST Arabidopsis thaliana protein match is: ho3 (HEME OXYGENASE 3); heme oxygenase (decyclizing) (TAIR:AT1G69720.1); Has 308 Blast hits to 305 proteins in 75 species: Archae - 0; Bacteria - 86; Metazoa - 112; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT2G26670.2p  transcript_id AT2G26670.2  protein_id AT2G26670.2p  transcript_id AT2G26670.2  
At2g26670	chr2:011341816	0.0	W/11341816-11342239,11342895-11343118,11343194-11343394	AT2G26670.1  CDS  gene_syn ARABIDOPSIS THALIANA HEME OXYGENASE 1, ATHO1, F18A8.4, F18A8_4, GENOMES UNCOUPLED 2, GUN2, HEME OXYGENASE, HEME OXYGENASE 1, HEME OXYGENASE 6, HO1, HY6, PLASTID HEME OXYGENASE, REVERSAL OF THE DET PHENOTYPE 4, TED4  gene TED4  function Encodes a plastid heme oxygenase necessary for phytochrome chromophore biosynthesis and for coupling the expression of some nuclear genes to the functional state of the chloroplast.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|10072395|IDA  go_process heme oxidation|GO:0006788||ISS  go_process red, far-red light phototransduction|GO:0009585||IMP  go_process chloroplast-nucleus signaling pathway|GO:0010019|7690685|IMP  go_process phytochromobilin biosynthetic process|GO:0010024|16428602|IDA  go_process regulation of meristem growth|GO:0010075|18424613|IGI  go_function heme oxygenase (decyclizing) activity|GO:0004392|16428602|IDA  product TED4 (REVERSAL OF THE DET PHENOTYPE 4); heme oxygenase (decyclizing)  note REVERSAL OF THE DET PHENOTYPE 4 (TED4); FUNCTIONS IN: heme oxygenase (decyclizing) activity; INVOLVED IN: regulation of meristem growth, chloroplast-nucleus signaling pathway, red, far-red light phototransduction, heme oxidation, phytochromobilin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem oxygenase-like, multi-helical (InterPro:IPR016084), Haem oxygenase-like (InterPro:IPR016053), Haem oxygenase (decyclizing), plant (InterPro:IPR016951); BEST Arabidopsis thaliana protein match is: ho3 (HEME OXYGENASE 3); heme oxygenase (decyclizing) (TAIR:AT1G69720.1); Has 487 Blast hits to 487 proteins in 101 species: Archae - 0; Bacteria - 129; Metazoa - 180; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT2G26670.1p  transcript_id AT2G26670.1  protein_id AT2G26670.1p  transcript_id AT2G26670.1  
At2g26680	chr2:011344689	0.0	C/11344689-11345288,11344003-11344362	AT2G26680.1  CDS  gene_syn F18A8.5, F18A8_5  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase FkbM (InterPro:IPR006342); Has 827 Blast hits to 827 proteins in 145 species: Archae - 22; Bacteria - 329; Metazoa - 0; Fungi - 2; Plants - 28; Viruses - 2; Other Eukaryotes - 444 (source: NCBI BLink).  protein_id AT2G26680.1p  transcript_id AT2G26680.1  protein_id AT2G26680.1p  transcript_id AT2G26680.1  
At2g26692	chr2:011350719	0.0	W/11350719-11351293	AT2G26692.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G26690  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G26692.1  
At2g26690	chr2:011350914	0.0	C/11350914-11350916,11350726-11350828,11349285-11349502,11348773-11349008,11348378-11348683,11347953-11348299,11347347-11347867	AT2G26690.1  CDS  gene_syn F18A8.6, F18A8_6  go_component membrane|GO:0016020||IEA  go_process response to wounding|GO:0009611|16021335|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16021335|IEP  go_function transporter activity|GO:0005215||ISS  product nitrate transporter (NTP2)  note nitrate transporter (NTP2); FUNCTIONS IN: transporter activity; INVOLVED IN: response to jasmonic acid stimulus, response to wounding; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region, conserved site (InterPro:IPR018456), TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: NRT1.1; nitrate transmembrane transporter/ transporter (TAIR:AT1G12110.1); Has 4204 Blast hits to 4131 proteins in 765 species: Archae - 0; Bacteria - 1892; Metazoa - 433; Fungi - 280; Plants - 1124; Viruses - 0; Other Eukaryotes - 475 (source: NCBI BLink).  protein_id AT2G26690.1p  transcript_id AT2G26690.1  protein_id AT2G26690.1p  transcript_id AT2G26690.1  
At2g26695	chr2:011365275	0.0	W/11365275-11365680,11365779-11365789	AT2G26695.1  CDS  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function binding|GO:0005488||ISS  product binding / zinc ion binding  note binding / zinc ion binding; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: zinc finger (Ran-binding) family protein (TAIR:AT3G15680.1); Has 718 Blast hits to 468 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 301; Fungi - 74; Plants - 196; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink).  protein_id AT2G26695.1p  transcript_id AT2G26695.1  protein_id AT2G26695.1p  transcript_id AT2G26695.1  
At2g26700	chr2:011368613	0.0	W/11368613-11369187,11369734-11370272,11370488-11370951	AT2G26700.1  CDS  gene_syn F18A8.7, F18A8_7, PID2, PINOID2  gene PID2  function Encodes PID2, a homolog of PID. Simultaneous disruption of PID(AT2G34650) and its 3 closest homologs (PID2/AT2G26700, WAG1/AT1G53700, and WAG2/AT3G14370) abolishes the formation of cotyledons.  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process cotyledon development|GO:0048825|19075219|IGI  go_function protein kinase activity|GO:0004672||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301|13678909|ISS  product PID2 (PINOID2); ATP binding / kinase/ protein kinase  note PINOID2 (PID2); FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, cotyledon development; EXPRESSED IN: shoot apex, embryo vascular system, embryo, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, embryo development stages, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: D6PKL2 (D6 PROTEIN KINASE LIKE 2); kinase (TAIR:AT5G47750.1); Has 83502 Blast hits to 60559 proteins in 2253 species: Archae - 15; Bacteria - 7134; Metazoa - 39201; Fungi - 9117; Plants - 10097; Viruses - 349; Other Eukaryotes - 17589 (source: NCBI BLink).  protein_id AT2G26700.1p  transcript_id AT2G26700.1  protein_id AT2G26700.1p  transcript_id AT2G26700.1  
At2g26710	chr2:011380700	0.0	W/11380700-11380985,11381752-11382217,11382355-11382724,11382973-11383413	AT2G26710.1  CDS  gene_syn BAS1, CYP72B1, CYP734A1, F18A8.8, F18A8_8, PHYB ACTIVATION TAGGED SUPPRESSOR 1  gene BAS1  function Encodes a member of the cytochrome p450 family that serves as a control point between multiple photoreceptor systems and brassinosteroid signal transduction. Involved in brassinolide metabolism. Mediates response to a variety of light signals including hypocotyl elongation and cotyledon expansion.  go_component endomembrane system|GO:0012505||IEA  go_process response to light stimulus|GO:0009416|15773851|IGI  go_process response to brassinosteroid stimulus|GO:0009741|15908602|IEP  go_process brassinosteroid homeostasis|GO:0010268|15908602|IEP  go_process brassinosteroid metabolic process|GO:0016131|10611382|IDA  go_process brassinosteroid metabolic process|GO:0016131|15773851|IMP  go_function steroid hydroxylase activity|GO:0008395|10611382|IMP  go_function oxygen binding|GO:0019825||ISS  product BAS1 (PHYB ACTIVATION TAGGED SUPPRESSOR 1); oxygen binding / steroid hydroxylase  note PHYB ACTIVATION TAGGED SUPPRESSOR 1 (BAS1); FUNCTIONS IN: steroid hydroxylase activity, oxygen binding; INVOLVED IN: response to light stimulus, brassinosteroid homeostasis, response to brassinosteroid stimulus, brassinosteroid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP72A8; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G14620.1); Has 24441 Blast hits to 24334 proteins in 1284 species: Archae - 42; Bacteria - 3394; Metazoa - 10178; Fungi - 4367; Plants - 5064; Viruses - 3; Other Eukaryotes - 1393 (source: NCBI BLink).  protein_id AT2G26710.1p  transcript_id AT2G26710.1  protein_id AT2G26710.1p  transcript_id AT2G26710.1  
At2g26720	chr2:011384782	0.0	W/11384782-11385402	AT2G26720.1  CDS  gene_syn F18A8.9, F18A8_9  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function copper ion binding|GO:0005507||ISS  product plastocyanin-like domain-containing protein / mavicyanin, putative  note plastocyanin-like domain-containing protein / mavicyanin, putative; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to membrane; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: plastocyanin-like domain-containing protein (TAIR:AT2G31050.1); Has 810 Blast hits to 799 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 809; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G26720.1p  transcript_id AT2G26720.1  protein_id AT2G26720.1p  transcript_id AT2G26720.1  
At2g26730	chr2:011388621	0.0	W/11388621-11389929,11390619-11391286	AT2G26730.1  CDS  gene_syn F18A8.10, F18A8_10  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT3G02880.1); Has 100655 Blast hits to 77390 proteins in 2684 species: Archae - 54; Bacteria - 7021; Metazoa - 35318; Fungi - 5064; Plants - 39824; Viruses - 359; Other Eukaryotes - 13015 (source: NCBI BLink).  protein_id AT2G26730.1p  transcript_id AT2G26730.1  protein_id AT2G26730.1p  transcript_id AT2G26730.1  
At2g26740	chr2:011393781	0.0	C/11393781-11394257,11393466-11393707,11393148-11393394	AT2G26740.1  CDS  gene_syn ATSEH, Arabidopsis thaliana soluble epoxide hydrolase, EPOXIDE HYDROLASE, F18A8.11, F18A8_11  gene ATSEH  function Encodes a soluble epoxide hydrolase whose expression is induced by auxin and water stress.  go_process response to water deprivation|GO:0009414|7920716|IEP  go_process response to auxin stimulus|GO:0009733|7920716|IEP  go_function epoxide hydrolase activity|GO:0004301|7920716|IDA  go_function epoxide hydrolase activity|GO:0004301||ISS  product ATSEH (Arabidopsis thaliana soluble epoxide hydrolase); epoxide hydrolase  note Arabidopsis thaliana soluble epoxide hydrolase (ATSEH); FUNCTIONS IN: epoxide hydrolase activity; INVOLVED IN: response to auxin stimulus, response to water deprivation; EXPRESSED IN: stem, leaf; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: epoxide hydrolase, putative (TAIR:AT2G26750.1); Has 11348 Blast hits to 11334 proteins in 1037 species: Archae - 28; Bacteria - 7179; Metazoa - 610; Fungi - 345; Plants - 315; Viruses - 0; Other Eukaryotes - 2871 (source: NCBI BLink).  protein_id AT2G26740.1p  transcript_id AT2G26740.1  protein_id AT2G26740.1p  transcript_id AT2G26740.1  
At2g26750	chr2:011396612	0.0	C/11396612-11397085,11396289-11396530,11395971-11396217	AT2G26750.1  CDS  gene_syn F18A8.12, F18A8_12  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function epoxide hydrolase activity|GO:0004301||ISS  product epoxide hydrolase, putative  note epoxide hydrolase, putative; FUNCTIONS IN: epoxide hydrolase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: ATSEH (Arabidopsis thaliana soluble epoxide hydrolase); epoxide hydrolase (TAIR:AT2G26740.1); Has 9352 Blast hits to 9331 proteins in 978 species: Archae - 20; Bacteria - 5773; Metazoa - 471; Fungi - 301; Plants - 253; Viruses - 0; Other Eukaryotes - 2534 (source: NCBI BLink).  protein_id AT2G26750.1p  transcript_id AT2G26750.1  protein_id AT2G26750.1p  transcript_id AT2G26750.1  
At2g26760	chr2:011401551	0.0	W/11401551-11401599,11401829-11401932,11402006-11402164,11402260-11402966,11403061-11403205	AT2G26760.1  CDS  gene_syn CYCB1;4, Cyclin B1;4, F18A8.13, F18A8_13  gene CYCB1;4  go_component nucleus|GO:0005634||IEA  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase regulator activity|GO:0016538||ISS  product CYCB1;4 (Cyclin B1;4); cyclin-dependent protein kinase regulator  note Cyclin B1;4 (CYCB1;4); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCB1;1 (CYCLIN B1;1); cyclin-dependent protein kinase regulator (TAIR:AT4G37490.1); Has 3295 Blast hits to 3294 proteins in 292 species: Archae - 0; Bacteria - 0; Metazoa - 1731; Fungi - 374; Plants - 687; Viruses - 35; Other Eukaryotes - 468 (source: NCBI BLink).  protein_id AT2G26760.1p  transcript_id AT2G26760.1  protein_id AT2G26760.1p  transcript_id AT2G26760.1  
At2g26770	chr2:011407462	0.0	C/11407462-11407743,11407020-11407148,11406710-11406802,11406129-11406269,11405963-11406031,11405758-11405841,11405433-11405613,11405096-11405212,11404857-11404915,11404637-11404771,11404391-11404540,11404257-11404307	AT2G26770.1  CDS  gene_syn F18A8.14, F18A8_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product plectin-related  note plectin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40820.1); Has 3952 Blast hits to 3377 proteins in 399 species: Archae - 59; Bacteria - 505; Metazoa - 1940; Fungi - 261; Plants - 178; Viruses - 13; Other Eukaryotes - 996 (source: NCBI BLink).  protein_id AT2G26770.1p  transcript_id AT2G26770.1  protein_id AT2G26770.1p  transcript_id AT2G26770.1  
At2g26770	chr2:011407462	0.0	C/11407462-11407743,11407020-11407148,11406710-11406802,11406129-11406269,11405963-11406031,11405758-11405841,11405433-11405613,11405096-11405212,11404857-11404915,11404637-11404771,11404391-11404540,11404257-11404307	AT2G26770.2  CDS  gene_syn F18A8.14, F18A8_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product plectin-related  note plectin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40820.1); Has 3952 Blast hits to 3377 proteins in 399 species: Archae - 59; Bacteria - 505; Metazoa - 1940; Fungi - 261; Plants - 178; Viruses - 13; Other Eukaryotes - 996 (source: NCBI BLink).  protein_id AT2G26770.2p  transcript_id AT2G26770.2  protein_id AT2G26770.2p  transcript_id AT2G26770.2  
At2g26780	chr2:011410125	0.0	W/11410125-11410310,11410400-11410567,11410658-11410747,11411165-11411301,11411384-11411474,11411585-11411667,11411778-11411920,11412122-11412205,11412274-11412426,11412851-11412915,11413187-11413274,11413369-11413447,11413531-11413639,11413767-11413826,11413922-11414082,11414518-11414896,11415007-11415191,11415275-11415347,11416091-11416241,11416315-11416487,11416603-11416938,11417183-11417350,11417429-11417722,11418090-11418266,11418601-11418864,11419151-11419249,11419331-11419515,11420437-11420772,11421088-11421241,11421338-11421448,11421684-11421851,11421987-11422113,11422438-11422596,11422671-11422783,11422863-11422922,11423407-11423598	AT2G26780.1  CDS  gene_syn F18A8.15, F18A8_15  go_component membrane|GO:0016020|17432890|IDA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); Has 325 Blast hits to 275 proteins in 96 species: Archae - 0; Bacteria - 0; Metazoa - 149; Fungi - 125; Plants - 34; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT2G26780.1p  transcript_id AT2G26780.1  protein_id AT2G26780.1p  transcript_id AT2G26780.1  
At2g26790	chr2:011425270	0.0	C/11425270-11427669	AT2G26790.1  CDS  gene_syn F12C20.17, F12C20_17  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G13800.1); Has 22729 Blast hits to 5815 proteins in 174 species: Archae - 9; Bacteria - 16; Metazoa - 441; Fungi - 387; Plants - 20962; Viruses - 2; Other Eukaryotes - 912 (source: NCBI BLink).  protein_id AT2G26790.1p  transcript_id AT2G26790.1  protein_id AT2G26790.1p  transcript_id AT2G26790.1  
At2g26800	chr2:011432022	0.0	C/11432022-11432185,11431724-11431931,11431355-11431534,11430719-11430799,11430468-11430631,11429885-11430021,11429525-11429640,11429192-11429443	AT2G26800.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component mitochondrion|GO:0005739|14764908|IDA  go_process leucine metabolic process|GO:0006551||ISS  go_function hydroxymethylglutaryl-CoA lyase activity|GO:0004419||ISS  product hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / HMG-CoA lyase, putative  note hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / HMG-CoA lyase, putative; FUNCTIONS IN: hydroxymethylglutaryl-CoA lyase activity, catalytic activity; INVOLVED IN: leucine metabolic process, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Pyruvate carboxyltransferase (InterPro:IPR000891); BEST Arabidopsis thaliana protein match is: MAM1 (METHYLTHIOALKYLMALATE SYNTHASE 1); 2-isopropylmalate synthase/ methylthioalkylmalate synthase (TAIR:AT5G23010.1); Has 7083 Blast hits to 7079 proteins in 1248 species: Archae - 266; Bacteria - 3753; Metazoa - 176; Fungi - 188; Plants - 138; Viruses - 0; Other Eukaryotes - 2562 (source: NCBI BLink).  protein_id AT2G26800.1p  transcript_id AT2G26800.1  protein_id AT2G26800.1p  transcript_id AT2G26800.1  
At2g26800	chr2:011432022	0.0	C/11432022-11432290,11431724-11431931,11431355-11431534,11430719-11430799,11430468-11430631,11429856-11430021	AT2G26800.3  CDS  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component mitochondrion|GO:0005739|14764908|IDA  go_process leucine metabolic process|GO:0006551||ISS  go_function hydroxymethylglutaryl-CoA lyase activity|GO:0004419||ISS  product hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / HMG-CoA lyase, putative  note hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / HMG-CoA lyase, putative; FUNCTIONS IN: hydroxymethylglutaryl-CoA lyase activity, catalytic activity; INVOLVED IN: leucine metabolic process, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Pyruvate carboxyltransferase (InterPro:IPR000891); Has 1945 Blast hits to 1944 proteins in 531 species: Archae - 4; Bacteria - 1091; Metazoa - 164; Fungi - 75; Plants - 41; Viruses - 0; Other Eukaryotes - 570 (source: NCBI BLink).  protein_id AT2G26800.3p  transcript_id AT2G26800.3  protein_id AT2G26800.3p  transcript_id AT2G26800.3  
At2g26800	chr2:011432022	0.0	C/11432022-11432290,11431724-11431931,11431355-11431534,11430719-11430799,11430468-11430631,11429885-11430021,11429525-11429640,11429192-11429443	AT2G26800.2  CDS  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component mitochondrion|GO:0005739|14764908|IDA  go_process leucine metabolic process|GO:0006551||ISS  go_function hydroxymethylglutaryl-CoA lyase activity|GO:0004419||ISS  product hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / HMG-CoA lyase, putative  note hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / HMG-CoA lyase, putative; FUNCTIONS IN: hydroxymethylglutaryl-CoA lyase activity, catalytic activity; INVOLVED IN: leucine metabolic process, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Pyruvate carboxyltransferase (InterPro:IPR000891); BEST Arabidopsis thaliana protein match is: MAM1 (METHYLTHIOALKYLMALATE SYNTHASE 1); 2-isopropylmalate synthase/ methylthioalkylmalate synthase (TAIR:AT5G23010.1); Has 7083 Blast hits to 7079 proteins in 1248 species: Archae - 266; Bacteria - 3753; Metazoa - 176; Fungi - 188; Plants - 138; Viruses - 0; Other Eukaryotes - 2562 (source: NCBI BLink).  protein_id AT2G26800.2p  transcript_id AT2G26800.2  protein_id AT2G26800.2p  transcript_id AT2G26800.2  
At2g26810	chr2:011435987	0.0	C/11435987-11436078,11435807-11435874,11435174-11435293,11434754-11434827,11434615-11434672,11434317-11434534	AT2G26810.3  CDS  gene_syn F12C20.15, F12C20_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G26200.1); Has 783 Blast hits to 781 proteins in 141 species: Archae - 9; Bacteria - 30; Metazoa - 474; Fungi - 86; Plants - 111; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT2G26810.3p  transcript_id AT2G26810.3  protein_id AT2G26810.3p  transcript_id AT2G26810.3  
At2g26810	chr2:011435987	0.0	C/11435987-11436078,11435807-11435874,11435174-11435293,11434754-11434827,11434615-11434672,11434433-11434534,11434143-11434254,11433900-11434044	AT2G26810.1  CDS  gene_syn F12C20.15, F12C20_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G26200.1); Has 1086 Blast hits to 1084 proteins in 196 species: Archae - 9; Bacteria - 84; Metazoa - 522; Fungi - 217; Plants - 135; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT2G26810.1p  transcript_id AT2G26810.1  protein_id AT2G26810.1p  transcript_id AT2G26810.1  
At2g26810	chr2:011435987	0.0	C/11435987-11436078,11435807-11435874,11435174-11435293,11434754-11434827,11434615-11434672,11434433-11434534,11434143-11434254,11433900-11434044	AT2G26810.2  CDS  gene_syn F12C20.15, F12C20_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G26200.1); Has 1086 Blast hits to 1084 proteins in 196 species: Archae - 9; Bacteria - 84; Metazoa - 522; Fungi - 217; Plants - 135; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT2G26810.2p  transcript_id AT2G26810.2  protein_id AT2G26810.2p  transcript_id AT2G26810.2  
At2g26820	chr2:011437808	0.0	W/11437808-11437997,11439662-11439939,11440050-11440214,11440726-11440881,11440997-11441122,11441409-11441500,11441815-11442199	AT2G26820.1  CDS  gene_syn ATPP2-A3, F12C20.14, F12C20_14, Phloem protein 2-A3  gene ATPP2-A3  go_process response to bacterium|GO:0009617||ISS  go_function carbohydrate binding|GO:0030246|12529520|ISS  product ATPP2-A3 (Phloem protein 2-A3); carbohydrate binding  note Phloem protein 2-A3 (ATPP2-A3); FUNCTIONS IN: carbohydrate binding; INVOLVED IN: response to bacterium; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703); BEST Arabidopsis thaliana protein match is: avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative (TAIR:AT1G33900.1); Has 6414 Blast hits to 4523 proteins in 386 species: Archae - 11; Bacteria - 445; Metazoa - 2801; Fungi - 363; Plants - 395; Viruses - 74; Other Eukaryotes - 2325 (source: NCBI BLink).  protein_id AT2G26820.1p  transcript_id AT2G26820.1  protein_id AT2G26820.1p  transcript_id AT2G26820.1  
At2g26830	chr2:011443599	0.0	W/11443599-11443729,11444188-11444279,11444377-11444483,11444766-11444871,11445161-11445283,11445426-11445517,11445947-11446031,11446258-11446363,11446453-11446519,11446656-11446748,11446836-11446958	AT2G26830.1  CDS  gene_syn F12C20.13, F12C20_13, emb1187, embryo defective 1187  gene emb1187  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function kinase activity|GO:0016301||ISS  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||ISS  product emb1187 (embryo defective 1187); kinase/ phosphotransferase, alcohol group as acceptor  note embryo defective 1187 (emb1187); FUNCTIONS IN: phosphotransferase activity, alcohol group as acceptor, kinase activity; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Choline/ethanolamine kinase (InterPro:IPR002573), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: choline kinase, putative (TAIR:AT4G09760.2); Has 1204 Blast hits to 1156 proteins in 272 species: Archae - 0; Bacteria - 248; Metazoa - 393; Fungi - 159; Plants - 84; Viruses - 0; Other Eukaryotes - 320 (source: NCBI BLink).  protein_id AT2G26830.1p  transcript_id AT2G26830.1  protein_id AT2G26830.1p  transcript_id AT2G26830.1  
At2g26840	chr2:011448542	0.0	C/11448542-11448871,11447994-11448099,11447858-11447910,11447635-11447766,11447346-11447546	AT2G26840.1  CDS  gene_syn F12C20.12, F12C20_12  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43910.1); Has 799 Blast hits to 799 proteins in 14 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 2; Other Eukaryotes - 768 (source: NCBI BLink).  protein_id AT2G26840.1p  transcript_id AT2G26840.1  protein_id AT2G26840.1p  transcript_id AT2G26840.1  
At2g26850	chr2:011450296	0.0	C/11450296-11450889,11450123-11450202,11449856-11450034,11449714-11449788,11449369-11449556	AT2G26850.1  CDS  gene_syn F12C20.11, F12C20_11  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G32560.1); Has 55 Blast hits to 54 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G26850.1p  transcript_id AT2G26850.1  protein_id AT2G26850.1p  transcript_id AT2G26850.1  
At2g26860	chr2:011452724	0.0	C/11452724-11453584,11452421-11452627	AT2G26860.2  CDS  gene_syn F12C20.10, F12C20_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G60610.1); Has 1327 Blast hits to 1297 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 32; Fungi - 0; Plants - 1293; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G26860.2p  transcript_id AT2G26860.2  protein_id AT2G26860.2p  transcript_id AT2G26860.2  
At2g26860	chr2:011452724	0.0	C/11452724-11453584,11452490-11452627,11452196-11452414	AT2G26860.1  CDS  gene_syn F12C20.10, F12C20_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G60610.1); Has 1343 Blast hits to 1313 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 32; Fungi - 0; Plants - 1307; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G26860.1p  transcript_id AT2G26860.1  protein_id AT2G26860.1p  transcript_id AT2G26860.1  
At2g26865	chr2:011455613	0.0	C/11455613-11455849	AT2G26865.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36724.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G26865.1p  transcript_id AT2G26865.1  protein_id AT2G26865.1p  transcript_id AT2G26865.1  
At2g26870	chr2:011458889	0.0	C/11458889-11459355,11457915-11458287,11457117-11457821	AT2G26870.1  CDS  gene_syn F12C20.9, F12C20_9  go_component endomembrane system|GO:0012505||IEA  go_process phospholipid biosynthetic process|GO:0008654||IEA  go_process triglyceride biosynthetic process|GO:0019432||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||ISS  product phosphoesterase family protein  note phosphoesterase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds; INVOLVED IN: triglyceride biosynthetic process, phospholipid biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoesterase (InterPro:IPR007312); BEST Arabidopsis thaliana protein match is: hydrolase, acting on ester bonds (TAIR:AT1G07230.1); Has 1405 Blast hits to 1390 proteins in 236 species: Archae - 10; Bacteria - 1164; Metazoa - 0; Fungi - 97; Plants - 90; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT2G26870.1p  transcript_id AT2G26870.1  protein_id AT2G26870.1p  transcript_id AT2G26870.1  
At2g26880	chr2:011460219	0.0	C/11460219-11460773	AT2G26880.1  CDS  gene_syn AGAMOUS-LIKE 41, AGL41, F12C20.8, F12C20_8  gene AGL41  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL41 (AGAMOUS-LIKE 41); DNA binding / transcription factor  note AGAMOUS-LIKE 41 (AGL41); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: AGL48 (AGAMOUS-LIKE 48); transcription factor (TAIR:AT2G40210.1); Has 11 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G26880.1p  transcript_id AT2G26880.1  protein_id AT2G26880.1p  transcript_id AT2G26880.1  
At2g26882	chr2:011460219	0.0	W/11460219-11461021	AT2G26882.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G26880  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G26882.1  
At2g26890	chr2:011472255	0.0	C/11472255-11472259,11471866-11471977,11471730-11471792,11469405-11471609,11468871-11469233,11468563-11468703,11467803-11468195,11467201-11467695,11466453-11466676,11466011-11466355,11465450-11465744,11464712-11465158,11464291-11464636,11463862-11464205,11463297-11463764,11463059-11463183,11462713-11462836,11462564-11462632,11462327-11462473	AT2G26890.2  CDS  gene_syn F12C20.7, F12C20_7, GRAVITROPISM DEFECTIVE 2, GRV2, KAM2, KATAMARI2  gene GRV2  function GRV2 has sequence similarity to the C. elegans protein RME-8 which is involved in endocytosis. grv2 mutants result in a reduction in gravitropic response in hypocotyls and shoots but do not affect root gravitropism. The mutants are defective in amyloplast sedimentation.  go_function binding|GO:0005488||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_component late endosome|GO:0005770|17971043|IDA  go_component vacuolar membrane|GO:0005774|17971043|IDA  go_component endoplasmic reticulum|GO:0005783|17971043|IDA  go_component microsome|GO:0005792|17259264|IDA  go_component trans-Golgi network|GO:0005802|17971043|IDA  go_component plasma membrane|GO:0005886|17971043|IDA  go_process protein folding|GO:0006457||ISS  go_process protein targeting to vacuole|GO:0006623|17293568|IMP  go_process endocytosis|GO:0006897|15466218|ISS  go_process endosome organization|GO:0007032|17259264|IMP  go_process vacuole organization|GO:0007033|17971043|IMP  go_process amyloplast organization|GO:0009660|15466218|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|17259264|IMP  go_process positive gravitropism|GO:0009958|15466218|IMP  go_process negative gravitropism|GO:0009959|15466218|IMP  go_process response to starvation|GO:0042594|17971043|IMP  go_process cell division|GO:0051301|17971043|IMP  product GRV2 (GRAVITROPISM DEFECTIVE 2); binding / heat shock protein binding  note GRAVITROPISM DEFECTIVE 2 (GRV2); FUNCTIONS IN: heat shock protein binding, binding; INVOLVED IN: in 11 processes; LOCATED IN: in 6 components; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Armadillo-type fold (InterPro:IPR016024); Has 4507 Blast hits to 4355 proteins in 965 species: Archae - 21; Bacteria - 1651; Metazoa - 1260; Fungi - 214; Plants - 229; Viruses - 5; Other Eukaryotes - 1127 (source: NCBI BLink).  protein_id AT2G26890.2p  transcript_id AT2G26890.2  protein_id AT2G26890.2p  transcript_id AT2G26890.2  
At2g26890	chr2:011473404	0.0	C/11473404-11473841,11472720-11472953,11472549-11472636,11472255-11472463,11471866-11471967,11471730-11471792,11469405-11471609,11468871-11469233,11468563-11468703,11467803-11468195,11467201-11467695,11466453-11466676,11466011-11466355,11465450-11465744,11464712-11465158,11464291-11464636,11463862-11464205,11463297-11463764,11463059-11463183,11462713-11462836,11462564-11462632,11462327-11462473	AT2G26890.1  CDS  gene_syn F12C20.7, F12C20_7, GRAVITROPISM DEFECTIVE 2, GRV2, KAM2, KATAMARI2  gene GRV2  function GRV2 has sequence similarity to the C. elegans protein RME-8 which is involved in endocytosis. grv2 mutants result in a reduction in gravitropic response in hypocotyls and shoots but do not affect root gravitropism. The mutants are defective in amyloplast sedimentation.  go_component vacuole|GO:0005773|14760709|IDA  go_function binding|GO:0005488||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_component late endosome|GO:0005770|17971043|IDA  go_component vacuolar membrane|GO:0005774|17971043|IDA  go_component endoplasmic reticulum|GO:0005783|17971043|IDA  go_component microsome|GO:0005792|17259264|IDA  go_component trans-Golgi network|GO:0005802|17971043|IDA  go_component plasma membrane|GO:0005886|17971043|IDA  go_process protein folding|GO:0006457||ISS  go_process protein targeting to vacuole|GO:0006623|17293568|IMP  go_process endocytosis|GO:0006897|15466218|ISS  go_process endosome organization|GO:0007032|17259264|IMP  go_process vacuole organization|GO:0007033|17971043|IMP  go_process amyloplast organization|GO:0009660|15466218|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|17259264|IMP  go_process positive gravitropism|GO:0009958|15466218|IMP  go_process negative gravitropism|GO:0009959|15466218|IMP  go_process response to starvation|GO:0042594|17971043|IMP  go_process cell division|GO:0051301|17971043|IMP  product GRV2 (GRAVITROPISM DEFECTIVE 2); binding / heat shock protein binding  note GRAVITROPISM DEFECTIVE 2 (GRV2); FUNCTIONS IN: binding, heat shock protein binding; INVOLVED IN: in 11 processes; LOCATED IN: in 7 components; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Armadillo-type fold (InterPro:IPR016024); Has 4513 Blast hits to 4355 proteins in 966 species: Archae - 21; Bacteria - 1652; Metazoa - 1261; Fungi - 213; Plants - 231; Viruses - 5; Other Eukaryotes - 1130 (source: NCBI BLink).  protein_id AT2G26890.1p  transcript_id AT2G26890.1  protein_id AT2G26890.1p  transcript_id AT2G26890.1  
At2g26900	chr2:011477768	0.0	C/11477768-11477870,11477592-11477694,11477404-11477521,11477269-11477310,11477073-11477186,11476928-11476990,11476382-11476509,11476210-11476291,11475926-11475977,11475741-11475838,11475492-11475650,11475311-11475400,11475156-11475233	AT2G26900.1  CDS  gene_syn F12C20.6, F12C20_6  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_process sodium ion transport|GO:0006814||IEA  go_process organic anion transport|GO:0015711||IEA  go_component membrane|GO:0016020||ISS  go_process sodium ion transport|GO:0006814||ISS  go_function transporter activity|GO:0005215||ISS  go_function bile acid:sodium symporter activity|GO:0008508||ISS  product bile acid:sodium symporter family protein  note bile acid:sodium symporter family protein; FUNCTIONS IN: transporter activity, bile acid:sodium symporter activity; INVOLVED IN: sodium ion transport, organic anion transport; LOCATED IN: membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bile acid:sodium symporter (InterPro:IPR002657), Bile acid transporter (InterPro:IPR004710); BEST Arabidopsis thaliana protein match is: bile acid:sodium symporter family protein (TAIR:AT1G78560.1); Has 3433 Blast hits to 3427 proteins in 577 species: Archae - 60; Bacteria - 1348; Metazoa - 377; Fungi - 2; Plants - 172; Viruses - 0; Other Eukaryotes - 1474 (source: NCBI BLink).  protein_id AT2G26900.1p  transcript_id AT2G26900.1  protein_id AT2G26900.1p  transcript_id AT2G26900.1  
At2g26910	chr2:011481623	0.0	W/11481623-11481897,11481979-11482099,11482185-11482273,11482357-11482441,11482529-11482688,11482764-11482840,11482935-11482988,11483168-11483258,11483339-11483640,11483720-11484001,11484101-11484417,11484497-11484657,11484736-11484839,11484933-11485092,11485186-11485308,11485388-11485479,11485552-11485884,11485969-11486259,11486339-11486422,11486499-11486632,11486723-11486950,11487028-11487199,11487282-11487536,11487602-11487874	AT2G26910.1  CDS  gene_syn ATPDR4, F12C20.5, F12C20_5, PDR4, PLEIOTROPIC DRUG RESISTANCE 4  gene PDR4  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855|16506311|ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product PDR4 (PLEIOTROPIC DRUG RESISTANCE 4); ATPase, coupled to transmembrane movement of substances  note PLEIOTROPIC DRUG RESISTANCE 4 (PDR4); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: multidrug transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 (InterPro:IPR000412), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PDR12 (PLEIOTROPIC DRUG RESISTANCE 12); ATPase, coupled to transmembrane movement of substances (TAIR:AT1G15520.1); Has 227772 Blast hits to 156896 proteins in 2502 species: Archae - 4872; Bacteria - 164954; Metazoa - 8485; Fungi - 4883; Plants - 3129; Viruses - 4; Other Eukaryotes - 41445 (source: NCBI BLink).  protein_id AT2G26910.1p  transcript_id AT2G26910.1  protein_id AT2G26910.1p  transcript_id AT2G26910.1  
At2g26920	chr2:011489648	0.0	W/11489648-11491588	AT2G26920.1  CDS  gene_syn F12C20.4, F12C20_4  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ubiquitin-associated (UBA)/TS-N domain-containing protein  note ubiquitin-associated (UBA)/TS-N domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: ubiquitin-associated (UBA)/TS-N domain-containing protein (TAIR:AT5G12120.1); Has 357 Blast hits to 347 proteins in 77 species: Archae - 0; Bacteria - 14; Metazoa - 137; Fungi - 59; Plants - 26; Viruses - 1; Other Eukaryotes - 120 (source: NCBI BLink).  protein_id AT2G26920.1p  transcript_id AT2G26920.1  protein_id AT2G26920.1p  transcript_id AT2G26920.1  
At2g26930	chr2:011494086	0.0	C/11494086-11494229,11493766-11493861,11493617-11493685,11493421-11493525,11493287-11493343,11493003-11493203,11492750-11492842,11492569-11492668,11492345-11492444,11492015-11492100,11491829-11491929	AT2G26930.1  CDS  gene_syn 4-(CYTIDINE 5 -PHOSPHO)-2-C-METHYL-D-ERITHRITOL KINASE, 4-DIPHOSPHOCYTIDYL-2C-METHYL-D-ERYTHRITOL KINASE, ATCDPMEK, F12C20.3, F12C20_3, ISPE, PDE277, PIGMENT DEFECTIVE 277  gene ATCDPMEK  function Encodes a 4-(cytidine 5 -phospho)-2-C-methyl-D-erithritol kinase.  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to light stimulus|GO:0009416|15863698|IEP  go_function 4-(cytidine 5 -diphospho)-2-C-methyl-D-erythritol kinase activity|GO:0050515|12777052|ISS  product ATCDPMEK (4-(CYTIDINE 5 -PHOSPHO)-2-C-METHYL-D-ERITHRITOL KINASE); 4-(cytidine 5 -diphospho)-2-C-methyl-D-erythritol kinase  note 4-(CYTIDINE 5 -PHOSPHO)-2-C-METHYL-D-ERITHRITOL KINASE (ATCDPMEK); FUNCTIONS IN: 4-(cytidine 5 -diphospho)-2-C-methyl-D-erythritol kinase activity; INVOLVED IN: response to light stimulus; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase (InterPro:IPR004424), GHMP kinase (InterPro:IPR006204), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721), GHMP kinase, C-terminal (InterPro:IPR013750); Has 4482 Blast hits to 4482 proteins in 1202 species: Archae - 3; Bacteria - 2489; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 1950 (source: NCBI BLink).  protein_id AT2G26930.1p  transcript_id AT2G26930.1  protein_id AT2G26930.1p  transcript_id AT2G26930.1  
At2g26940	chr2:011496518	0.0	C/11496518-11497378	AT2G26940.1  CDS  gene_syn F12C20.2, F12C20_2  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: leaf whorl, sepal, flower, leaf; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT5G56200.1); Has 314 Blast hits to 296 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 186; Fungi - 4; Plants - 119; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT2G26940.1p  transcript_id AT2G26940.1  protein_id AT2G26940.1p  transcript_id AT2G26940.1  
At2g26950	chr2:011501777	0.0	C/11501777-11502073,11500921-11501692,11500721-11500800	AT2G26950.1  CDS  gene_syn AtMYB104, T20P8.20, T20P8_20, myb domain protein 104  gene AtMYB104  function Member of the R2R3 factor gene family.  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AtMYB104 (myb domain protein 104); DNA binding / transcription factor  note myb domain protein 104 (AtMYB104); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: AtMYB81 (myb domain protein 81); DNA binding / transcription factor (TAIR:AT2G26960.1); Has 6044 Blast hits to 5608 proteins in 350 species: Archae - 0; Bacteria - 0; Metazoa - 617; Fungi - 259; Plants - 3595; Viruses - 3; Other Eukaryotes - 1570 (source: NCBI BLink).  protein_id AT2G26950.1p  transcript_id AT2G26950.1  protein_id AT2G26950.1p  transcript_id AT2G26950.1  
At2g26960	chr2:011507117	0.0	C/11507117-11507425,11506065-11507039	AT2G26960.1  CDS  gene_syn AtMYB81, T20P8.1, T20P8_1, myb domain protein 81  gene AtMYB81  function Member of the R2R3 factor gene family.  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product AtMYB81 (myb domain protein 81); DNA binding / transcription factor  note myb domain protein 81 (AtMYB81); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: AtMYB104 (myb domain protein 104); DNA binding / transcription factor (TAIR:AT2G26950.1); Has 6135 Blast hits to 5711 proteins in 353 species: Archae - 0; Bacteria - 0; Metazoa - 592; Fungi - 299; Plants - 3695; Viruses - 3; Other Eukaryotes - 1546 (source: NCBI BLink).  protein_id AT2G26960.1p  transcript_id AT2G26960.1  protein_id AT2G26960.1p  transcript_id AT2G26960.1  
At2g26970	chr2:011511825	0.0	C/11511825-11511903,11511522-11511593,11511076-11511152,11510615-11510696,11510472-11510527,11510290-11510376,11510111-11510201,11509908-11510020	AT2G26970.2  CDS  gene_syn T20P8.2, T20P8_2  go_component intracellular|GO:0005622||IEA  go_component endomembrane system|GO:0012505||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function exonuclease activity|GO:0004527||IEA  go_component intracellular|GO:0005622||ISS  go_process biological_process|GO:0008150||ND  go_function exonuclease activity|GO:0004527||ISS  product exonuclease family protein  note exonuclease family protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T and DNA polymerase III (InterPro:IPR013520); Has 2120 Blast hits to 2119 proteins in 700 species: Archae - 0; Bacteria - 1197; Metazoa - 113; Fungi - 78; Plants - 28; Viruses - 6; Other Eukaryotes - 698 (source: NCBI BLink).  protein_id AT2G26970.2p  transcript_id AT2G26970.2  protein_id AT2G26970.2p  transcript_id AT2G26970.2  
At2g26970	chr2:011511825	0.0	C/11511825-11511903,11511522-11511605,11511076-11511152,11510615-11510696,11510472-11510527,11510290-11510376,11510111-11510201,11509908-11510020	AT2G26970.1  CDS  gene_syn T20P8.2, T20P8_2  go_component intracellular|GO:0005622||IEA  go_component endomembrane system|GO:0012505||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function exonuclease activity|GO:0004527||IEA  go_component intracellular|GO:0005622||ISS  go_process biological_process|GO:0008150||ND  go_function exonuclease activity|GO:0004527||ISS  product exonuclease family protein  note exonuclease family protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T and DNA polymerase III (InterPro:IPR013520); Has 2120 Blast hits to 2119 proteins in 700 species: Archae - 0; Bacteria - 1197; Metazoa - 113; Fungi - 78; Plants - 28; Viruses - 6; Other Eukaryotes - 698 (source: NCBI BLink).  protein_id AT2G26970.1p  transcript_id AT2G26970.1  protein_id AT2G26970.1p  transcript_id AT2G26970.1  
At2g26975	chr2:011512992	0.0	W/11512992-11513429	AT2G26975.1  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_process copper ion transport|GO:0006825||IEA  go_function copper ion transmembrane transporter activity|GO:0005375||IEA  go_process copper ion transport|GO:0006825||ISS  go_function copper ion transmembrane transporter activity|GO:0005375||ISS  product copper transporter, putative  note copper transporter, putative; FUNCTIONS IN: copper ion transmembrane transporter activity; INVOLVED IN: copper ion transport; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Ctr copper transporter (InterPro:IPR007274); BEST Arabidopsis thaliana protein match is: COPT2; copper ion transmembrane transporter/ high affinity copper ion transmembrane transporter (TAIR:AT3G46900.1); Has 272 Blast hits to 271 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 129; Fungi - 32; Plants - 81; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT2G26975.1p  transcript_id AT2G26975.1  protein_id AT2G26975.1p  transcript_id AT2G26975.1  
At2g26980	chr2:011518032	0.0	C/11518032-11518205,11517870-11517932,11517701-11517772,11517503-11517610,11517303-11517383,11517109-11517162,11516893-11517018,11516697-11516786,11516085-11516207,11515896-11516006,11515671-11515817	AT2G26980.1  CDS  gene_syn CBL-INTERACTING PROTEIN KINASE 3, CIPK3, SNF1-RELATED PROTEIN KINASE 3.17, SnRK3.17, T20P8.3, T20P8_3  gene CIPK3  function encodes a serine-threonine protein kinase whose expression increases in response to abscisic acid, cold, drought, high salt, and wounding conditions. The gene is expressed in developing seeds and seedlings. Lines carrying a T-DNA insertions have reduced germination efficiency and expression of cold, high-salt, and abscisic acid marker genes are altered, but not drought-response markers.  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process response to abiotic stimulus|GO:0009628|12566581|IEP  go_process response to cytokinin stimulus|GO:0009735|16212609|IEP  go_process response to abscisic acid stimulus|GO:0009737|12566581|IEP  go_process abscisic acid mediated signaling|GO:0009738|12566581|TAS  go_process seed germination|GO:0009845|12566581|IEP  go_function protein kinase activity|GO:0004672|12566581|TAS  go_function protein serine/threonine kinase activity|GO:0004674|12566581|ISS  go_function kinase activity|GO:0016301||ISS  product CIPK3 (CBL-INTERACTING PROTEIN KINASE 3); kinase/ protein kinase/ protein serine/threonine kinase  note CBL-INTERACTING PROTEIN KINASE 3 (CIPK3); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity; INVOLVED IN: abscisic acid mediated signaling, response to abscisic acid stimulus, seed germination, response to cytokinin stimulus, response to abiotic stimulus; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), NAF/FISL domain (InterPro:IPR018451), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase family protein / NAF domain-containing protein (TAIR:AT5G21326.1); Has 95723 Blast hits to 94013 proteins in 2989 species: Archae - 85; Bacteria - 8644; Metazoa - 41338; Fungi - 8777; Plants - 18169; Viruses - 480; Other Eukaryotes - 18230 (source: NCBI BLink).  protein_id AT2G26980.1p  transcript_id AT2G26980.1  protein_id AT2G26980.1p  transcript_id AT2G26980.1  
At2g26980	chr2:011518032	0.0	C/11518032-11518205,11517870-11517932,11517701-11517772,11517503-11517610,11517303-11517383,11517109-11517162,11516893-11517018,11516697-11516786,11516085-11516207,11515896-11516006,11515704-11515817,11515458-11515619	AT2G26980.5  CDS  gene_syn CBL-INTERACTING PROTEIN KINASE 3, CIPK3, SNF1-RELATED PROTEIN KINASE 3.17, SnRK3.17, T20P8.3, T20P8_3  gene CIPK3  function encodes a serine-threonine protein kinase whose expression increases in response to abscisic acid, cold, drought, high salt, and wounding conditions. The gene is expressed in developing seeds and seedlings. Lines carrying a T-DNA insertions have reduced germination efficiency and expression of cold, high-salt, and abscisic acid marker genes are altered, but not drought-response markers.  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process response to abiotic stimulus|GO:0009628|12566581|IEP  go_process response to cytokinin stimulus|GO:0009735|16212609|IEP  go_process response to abscisic acid stimulus|GO:0009737|12566581|IEP  go_process abscisic acid mediated signaling|GO:0009738|12566581|TAS  go_process seed germination|GO:0009845|12566581|IEP  go_function protein kinase activity|GO:0004672|12566581|TAS  go_function protein serine/threonine kinase activity|GO:0004674|12566581|ISS  go_function kinase activity|GO:0016301||ISS  product CIPK3 (CBL-INTERACTING PROTEIN KINASE 3); kinase/ protein kinase/ protein serine/threonine kinase  note CBL-INTERACTING PROTEIN KINASE 3 (CIPK3); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity; INVOLVED IN: abscisic acid mediated signaling, response to abscisic acid stimulus, seed germination, response to cytokinin stimulus, response to abiotic stimulus; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), NAF/FISL domain (InterPro:IPR018451), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase family protein / NAF domain-containing protein (TAIR:AT5G21326.1); Has 95736 Blast hits to 94024 proteins in 2990 species: Archae - 85; Bacteria - 8644; Metazoa - 41339; Fungi - 8778; Plants - 18173; Viruses - 480; Other Eukaryotes - 18237 (source: NCBI BLink).  protein_id AT2G26980.5p  transcript_id AT2G26980.5  protein_id AT2G26980.5p  transcript_id AT2G26980.5  
At2g26980	chr2:011518032	0.0	C/11518032-11518205,11517870-11517932,11517701-11517772,11517503-11517610,11517303-11517383,11517109-11517162,11516893-11517018,11516697-11516786,11516085-11516207,11515896-11516006,11515704-11515817,11515563-11515619,11515396-11515470,11515234-11515311	AT2G26980.3  CDS  gene_syn CBL-INTERACTING PROTEIN KINASE 3, CIPK3, SNF1-RELATED PROTEIN KINASE 3.17, SnRK3.17, T20P8.3, T20P8_3  gene CIPK3  function encodes a serine-threonine protein kinase whose expression increases in response to abscisic acid, cold, drought, high salt, and wounding conditions. The gene is expressed in developing seeds and seedlings. Lines carrying a T-DNA insertions have reduced germination efficiency and expression of cold, high-salt, and abscisic acid marker genes are altered, but not drought-response markers.  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process response to abiotic stimulus|GO:0009628|12566581|IEP  go_process response to cytokinin stimulus|GO:0009735|16212609|IEP  go_process response to abscisic acid stimulus|GO:0009737|12566581|IEP  go_process abscisic acid mediated signaling|GO:0009738|12566581|TAS  go_process seed germination|GO:0009845|12566581|IEP  go_function protein kinase activity|GO:0004672|12566581|TAS  go_function protein serine/threonine kinase activity|GO:0004674|12566581|ISS  go_function kinase activity|GO:0016301||ISS  product CIPK3 (CBL-INTERACTING PROTEIN KINASE 3); kinase/ protein kinase/ protein serine/threonine kinase  note CBL-INTERACTING PROTEIN KINASE 3 (CIPK3); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity; INVOLVED IN: abscisic acid mediated signaling, response to abscisic acid stimulus, seed germination, response to cytokinin stimulus, response to abiotic stimulus; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase family protein / NAF domain-containing protein (TAIR:AT5G21326.1); Has 95738 Blast hits to 94026 proteins in 2990 species: Archae - 85; Bacteria - 8644; Metazoa - 41339; Fungi - 8777; Plants - 18182; Viruses - 480; Other Eukaryotes - 18231 (source: NCBI BLink).  protein_id AT2G26980.3p  transcript_id AT2G26980.3  protein_id AT2G26980.3p  transcript_id AT2G26980.3  
At2g26980	chr2:011518032	0.0	C/11518032-11518205,11517870-11517932,11517701-11517772,11517503-11517610,11517303-11517383,11517109-11517162,11516893-11517018,11516697-11516786,11516085-11516207,11515896-11516006,11515704-11515817,11515626-11515637	AT2G26980.2  CDS  gene_syn CBL-INTERACTING PROTEIN KINASE 3, CIPK3, SNF1-RELATED PROTEIN KINASE 3.17, SnRK3.17, T20P8.3, T20P8_3  gene CIPK3  function encodes a serine-threonine protein kinase whose expression increases in response to abscisic acid, cold, drought, high salt, and wounding conditions. The gene is expressed in developing seeds and seedlings. Lines carrying a T-DNA insertions have reduced germination efficiency and expression of cold, high-salt, and abscisic acid marker genes are altered, but not drought-response markers.  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process response to abiotic stimulus|GO:0009628|12566581|IEP  go_process response to cytokinin stimulus|GO:0009735|16212609|IEP  go_process response to abscisic acid stimulus|GO:0009737|12566581|IEP  go_process abscisic acid mediated signaling|GO:0009738|12566581|TAS  go_process seed germination|GO:0009845|12566581|IEP  go_function protein kinase activity|GO:0004672|12566581|TAS  go_function protein serine/threonine kinase activity|GO:0004674|12566581|ISS  go_function kinase activity|GO:0016301||ISS  product CIPK3 (CBL-INTERACTING PROTEIN KINASE 3); kinase/ protein kinase/ protein serine/threonine kinase  note CBL-INTERACTING PROTEIN KINASE 3 (CIPK3); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity; INVOLVED IN: abscisic acid mediated signaling, response to abscisic acid stimulus, seed germination, response to cytokinin stimulus, response to abiotic stimulus; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), NAF/FISL domain (InterPro:IPR018451), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase family protein / NAF domain-containing protein (TAIR:AT5G21326.1); Has 95721 Blast hits to 94011 proteins in 2989 species: Archae - 85; Bacteria - 8644; Metazoa - 41336; Fungi - 8777; Plants - 18169; Viruses - 480; Other Eukaryotes - 18230 (source: NCBI BLink).  protein_id AT2G26980.2p  transcript_id AT2G26980.2  protein_id AT2G26980.2p  transcript_id AT2G26980.2  
At2g26980	chr2:011518401	0.0	C/11518401-11518426,11518032-11518209,11517870-11517932,11517701-11517772,11517503-11517610,11517303-11517383,11517109-11517162,11516893-11517018,11516697-11516786,11516085-11516207,11515896-11516006,11515704-11515817,11515563-11515619,11515396-11515470,11515234-11515311	AT2G26980.4  CDS  gene_syn CBL-INTERACTING PROTEIN KINASE 3, CIPK3, SNF1-RELATED PROTEIN KINASE 3.17, SnRK3.17, T20P8.3, T20P8_3  gene CIPK3  function encodes a serine-threonine protein kinase whose expression increases in response to abscisic acid, cold, drought, high salt, and wounding conditions. The gene is expressed in developing seeds and seedlings. Lines carrying a T-DNA insertions have reduced germination efficiency and expression of cold, high-salt, and abscisic acid marker genes are altered, but not drought-response markers.  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process response to abiotic stimulus|GO:0009628|12566581|IEP  go_process response to cytokinin stimulus|GO:0009735|16212609|IEP  go_process response to abscisic acid stimulus|GO:0009737|12566581|IEP  go_process abscisic acid mediated signaling|GO:0009738|12566581|TAS  go_process seed germination|GO:0009845|12566581|IEP  go_function protein kinase activity|GO:0004672|12566581|TAS  go_function protein serine/threonine kinase activity|GO:0004674|12566581|ISS  go_function kinase activity|GO:0016301||ISS  product CIPK3 (CBL-INTERACTING PROTEIN KINASE 3); kinase/ protein kinase/ protein serine/threonine kinase  note CBL-INTERACTING PROTEIN KINASE 3 (CIPK3); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity; INVOLVED IN: abscisic acid mediated signaling, response to abscisic acid stimulus, seed germination, response to cytokinin stimulus, response to abiotic stimulus; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase family protein / NAF domain-containing protein (TAIR:AT5G21326.1); Has 95786 Blast hits to 94071 proteins in 2990 species: Archae - 85; Bacteria - 8644; Metazoa - 41355; Fungi - 8777; Plants - 18194; Viruses - 480; Other Eukaryotes - 18251 (source: NCBI BLink).  protein_id AT2G26980.4p  transcript_id AT2G26980.4  protein_id AT2G26980.4p  transcript_id AT2G26980.4  
At2g26990	chr2:011522403	0.0	C/11522403-11522412,11522176-11522268,11522007-11522085,11521293-11521533,11521132-11521206,11520907-11521041,11520603-11520790,11520270-11520338,11520106-11520196,11519684-11520022	AT2G26990.1  CDS  gene_syn ATCSN2, CONSTITUTIVE PHOTOMORPHOGENIC 12, COP12, CSN2, FUS12, FUSCA 12, T20P8.4, T20P8_4  gene FUS12  function Represses photomorphogenesis and induces skotomorphogenesis in the dark.  go_component nucleus|GO:0005634|10782111|TAS  go_component signalosome|GO:0008180|11019806|TAS  go_component signalosome|GO:0008180|9707402|IPI  go_process photomorphogenesis|GO:0009640|11019806|TAS  go_process cullin deneddylation|GO:0010388|17307927|IMP  go_process protein catabolic process|GO:0030163|10782111|TAS  product FUS12 (FUSCA 12)  note FUSCA 12 (FUS12); INVOLVED IN: cullin deneddylation, protein catabolic process, photomorphogenesis; LOCATED IN: signalosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component region PCI (InterPro:IPR000717), PCI/PINT associated module (InterPro:IPR013143); BEST Arabidopsis thaliana protein match is: ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) (TAIR:AT1G29150.1); Has 674 Blast hits to 670 proteins in 174 species: Archae - 2; Bacteria - 9; Metazoa - 282; Fungi - 162; Plants - 127; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).  protein_id AT2G26990.1p  transcript_id AT2G26990.1  protein_id AT2G26990.1p  transcript_id AT2G26990.1  
At2g27000	chr2:011524184	0.0	C/11524184-11525095,11523475-11524107	AT2G27000.1  CDS  gene_syn CYP705A8, CYTOCHROME P450, FAMILY 705, SUBFAMILY A, POLYPEPTIDE 8, T20P8.5, T20P8_5  gene CYP705A8  function member of CYP705A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP705A8; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP705A8; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP705A9; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT2G27010.1); Has 23020 Blast hits to 22914 proteins in 1214 species: Archae - 21; Bacteria - 1930; Metazoa - 10185; Fungi - 4350; Plants - 5616; Viruses - 6; Other Eukaryotes - 912 (source: NCBI BLink).  protein_id AT2G27000.1p  transcript_id AT2G27000.1  protein_id AT2G27000.1p  transcript_id AT2G27000.1  
At2g27010	chr2:011527487	0.0	C/11527487-11527854,11526963-11527440,11526236-11526886	AT2G27010.1  CDS  gene_syn CYP705A9, CYTOCHROME P450, FAMILY 705, SUBFAMILY A, POLYPEPTIDE 9, T20P8.6, T20P8_6  gene CYP705A9  function member of CYP705A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP705A9; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP705A9; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP705A8; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT2G27000.1); Has 23659 Blast hits to 23462 proteins in 1243 species: Archae - 23; Bacteria - 2156; Metazoa - 10287; Fungi - 4545; Plants - 5640; Viruses - 6; Other Eukaryotes - 1002 (source: NCBI BLink).  protein_id AT2G27010.1p  transcript_id AT2G27010.1  protein_id AT2G27010.1p  transcript_id AT2G27010.1  
At2g27020	chr2:011530755	0.0	C/11530755-11530858,11530584-11530623,11530191-11530274,11529971-11530044,11529627-11529713,11529454-11529538,11529318-11529364,11528865-11528930,11528670-11528760,11528515-11528586	AT2G27020.1  CDS  gene_syn 20S PROTEASOME ALPHA SUBUNIT G1, 20S PROTEASOME SUBUNIT PAG1, PAG1, T20P8.7, T20P8_7  gene PAG1  function Encodes 20S proteasome subunit PAG1 (PAG1).  go_component nucleus|GO:0005634|14617066|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function endopeptidase activity|GO:0004175||IEA  go_function threonine-type endopeptidase activity|GO:0004298||IEA  go_component proteasome core complex|GO:0005839|9373170|TAS  go_component proteasome core complex|GO:0005839|9611183|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_process response to cold|GO:0009409|14617066|IEP  go_function peptidase activity|GO:0008233||ISS  product PAG1; endopeptidase/ peptidase/ threonine-type endopeptidase  note PAG1; FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: response to cadmium ion, response to cold, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, apoplast, plasma membrane, nucleus, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome alpha-subunit, conserved site (InterPro:IPR000426), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: PAE2; endopeptidase/ peptidase/ threonine-type endopeptidase (TAIR:AT3G14290.1); Has 4220 Blast hits to 4216 proteins in 342 species: Archae - 494; Bacteria - 2; Metazoa - 1607; Fungi - 887; Plants - 504; Viruses - 0; Other Eukaryotes - 726 (source: NCBI BLink).  protein_id AT2G27020.1p  transcript_id AT2G27020.1  protein_id AT2G27020.1p  transcript_id AT2G27020.1  
At2g27030	chr2:011532069	0.0	W/11532069-11532144,11532687-11533056,11534077-11534176	AT2G27030.3  CDS  gene_syn 1357, ACAM-2, CALMODULIN 2, CALMODULIN 5, CAM2, CAM5, T20P8.8  gene CAM5  function encodes a calmodulin that has higher affinity to kinesin-like calmodulin binding motor protein than CAM4 or CAM6.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function calcium ion binding|GO:0005509||IEA  go_function calcium ion binding|GO:0005509||ISS  product CAM5 (CALMODULIN 5); calcium ion binding  note CALMODULIN 5 (CAM5); FUNCTIONS IN: calcium ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: CAM3 (CALMODULIN 3); calcium ion binding (TAIR:AT3G56800.1); Has 28214 Blast hits to 18423 proteins in 1451 species: Archae - 0; Bacteria - 142; Metazoa - 13433; Fungi - 5739; Plants - 4458; Viruses - 0; Other Eukaryotes - 4442 (source: NCBI BLink).  protein_id AT2G27030.3p  transcript_id AT2G27030.3  protein_id AT2G27030.3p  transcript_id AT2G27030.3  
At2g27030	chr2:011532069	0.0	W/11532069-11532144,11532687-11533060	AT2G27030.1  CDS  gene_syn 1357, ACAM-2, CALMODULIN 2, CALMODULIN 5, CAM2, CAM5, T20P8.8  gene CAM5  function encodes a calmodulin that has higher affinity to kinesin-like calmodulin binding motor protein than CAM4 or CAM6.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function calcium ion binding|GO:0005509||IEA  go_function calcium ion binding|GO:0005509||ISS  product CAM5 (CALMODULIN 5); calcium ion binding  note CALMODULIN 5 (CAM5); FUNCTIONS IN: calcium ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: CAM3 (CALMODULIN 3); calcium ion binding (TAIR:AT3G56800.1); Has 26600 Blast hits to 18178 proteins in 1445 species: Archae - 0; Bacteria - 129; Metazoa - 12459; Fungi - 5643; Plants - 4222; Viruses - 0; Other Eukaryotes - 4147 (source: NCBI BLink).  protein_id AT2G27030.1p  transcript_id AT2G27030.1  protein_id AT2G27030.1p  transcript_id AT2G27030.1  
At2g27030	chr2:011532719	0.0	W/11532719-11533060	AT2G27030.2  CDS  gene_syn 1357, ACAM-2, CALMODULIN 2, CALMODULIN 5, CAM2, CAM5, T20P8.8  gene CAM5  function encodes a calmodulin that has higher affinity to kinesin-like calmodulin binding motor protein than CAM4 or CAM6.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function calcium ion binding|GO:0005509||IEA  go_function calcium ion binding|GO:0005509||ISS  product CAM5 (CALMODULIN 5); calcium ion binding  note CALMODULIN 5 (CAM5); FUNCTIONS IN: calcium ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: CAM3 (CALMODULIN 3); calcium ion binding (TAIR:AT3G56800.1); Has 24232 Blast hits to 16612 proteins in 1406 species: Archae - 0; Bacteria - 65; Metazoa - 11677; Fungi - 4814; Plants - 4150; Viruses - 0; Other Eukaryotes - 3526 (source: NCBI BLink).  protein_id AT2G27030.2p  transcript_id AT2G27030.2  protein_id AT2G27030.2p  transcript_id AT2G27030.2  
At2g27035	chr2:011535670	0.0	W/11535670-11535844,11535935-11536251	AT2G27035.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function copper ion binding|GO:0005507||ISS  product plastocyanin-like domain-containing protein  note plastocyanin-like domain-containing protein; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: plastocyanin-like domain-containing protein (TAIR:AT4G12880.1); Has 700 Blast hits to 697 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 700; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G27035.1p  transcript_id AT2G27035.1  protein_id AT2G27035.1p  transcript_id AT2G27035.1  
At2g27040	chr2:011541231	0.0	C/11541231-11541503,11540866-11541071,11540563-11540787,11540350-11540486,11540156-11540253,11539959-11540056,11539669-11539837,11539456-11539572,11539267-11539374,11539115-11539177,11538933-11539046,11538670-11538835,11538464-11538579,11538249-11538386,11538027-11538154,11537867-11537932,11537719-11537782,11537526-11537637,11537373-11537446,11537193-11537287,11537061-11537092,11536795-11536970	AT2G27040.1  CDS  gene_syn AGO4, ARGONAUTE 4, OCP11, OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, T20P8.9, T20P8_9  gene AGO4  function AGO4 is a member of a class of PAZ/PIWI domain containing proteins involved in siRNA mediated gene silencing.Loss of function mutations have reduced site specific CpNpG and CpHpH methylation and increased susceptibility to bacterial pathogens.  go_function nucleic acid binding|GO:0003676||IEA  go_component nuclear euchromatin|GO:0005719|16839879|IDA  go_component nucleolus|GO:0005730|16839878|IDA  go_component Cajal body|GO:0015030|16839879|IDA  go_process DNA methylation|GO:0006306|17332757|IMP  go_process chromatin silencing|GO:0006342|11016954|IMP  go_process defense response to bacterium, incompatible interaction|GO:0009816|17993621|IMP  go_process long-distance posttranscriptional gene silencing|GO:0010495|17785412|IMP  go_process chromatin silencing by small RNA|GO:0031048|17993621|TAS  go_process histone H3-K9 methylation|GO:0051567|16839879|IMP  product AGO4 (ARGONAUTE 4); nucleic acid binding  note ARGONAUTE 4 (AGO4); FUNCTIONS IN: nucleic acid binding; INVOLVED IN: in 6 processes; LOCATED IN: nuclear euchromatin, nucleolus, Cajal body; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Argonaute and Dicer protein, PAZ (InterPro:IPR003100), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: PAZ domain-containing protein / piwi domain-containing protein (TAIR:AT5G21150.1); Has 1419 Blast hits to 1387 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 861; Fungi - 173; Plants - 259; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink).  protein_id AT2G27040.1p  transcript_id AT2G27040.1  protein_id AT2G27040.1p  transcript_id AT2G27040.1  
At2g27050	chr2:011546314	0.0	W/11546314-11548068	AT2G27050.1  CDS  gene_syn EIL1, ETHYLENE-INSENSITIVE3-LIKE 1, T20P8.10, T20P8_10  gene EIL1  function ethylene-insensitive3-like1 (EIL1)  go_component nucleus|GO:0005634||IEA  go_process response to ethylene stimulus|GO:0009723|12606727|IMP  go_process ethylene mediated signaling pathway|GO:0009873|12606727|TAS  go_process ethylene mediated signaling pathway|GO:0009873|9215635|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12606727|TAS  go_function transcription factor activity|GO:0003700|9215635|TAS  go_function transcription regulator activity|GO:0030528|9215635|ISS  product EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1); transcription factor/ transcription regulator  note ETHYLENE-INSENSITIVE3-LIKE 1 (EIL1); FUNCTIONS IN: transcription factor activity, transcription regulator activity; INVOLVED IN: response to ethylene stimulus, ethylene mediated signaling pathway; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ethylene insensitive 3 (InterPro:IPR006957); BEST Arabidopsis thaliana protein match is: EIN3 (ETHYLENE-INSENSITIVE3); transcription factor (TAIR:AT3G20770.1); Has 233 Blast hits to 230 proteins in 31 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 230; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G27050.1p  transcript_id AT2G27050.1  protein_id AT2G27050.1p  transcript_id AT2G27050.1  
At2g27060	chr2:011551288	0.0	W/11551288-11552200,11552308-11553852,11553973-11554577	AT2G27060.1  CDS  gene_syn T20P8.11, T20P8_11  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT5G10020.1); Has 75925 Blast hits to 45871 proteins in 1485 species: Archae - 52; Bacteria - 6405; Metazoa - 23592; Fungi - 2066; Plants - 36725; Viruses - 126; Other Eukaryotes - 6959 (source: NCBI BLink).  protein_id AT2G27060.1p  transcript_id AT2G27060.1  protein_id AT2G27060.1p  transcript_id AT2G27060.1  
At2g27070	chr2:011560092	0.0	C/11560092-11560215,11559094-11559258,11558526-11558981,11558337-11558413,11557702-11557961,11557241-11557640,11557095-11557142,11556758-11556844,11556604-11556651,11555781-11555843	AT2G27070.1  CDS  gene_syn ARABIDOPSIS RESPONSE REGULATOR 13, ARR13, T20P8.12, T20P8_12  gene ARR13  function member of Response Regulator: B- Type  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_function two-component response regulator activity|GO:0000156|11574878|ISS  go_function two-component response regulator activity|GO:0000156|12068096|ISS  go_function two-component response regulator activity|GO:0000156||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ARR13 (ARABIDOPSIS RESPONSE REGULATOR 13); transcription factor/ two-component response regulator  note ARABIDOPSIS RESPONSE REGULATOR 13 (ARR13); FUNCTIONS IN: transcription factor activity, two-component response regulator activity; INVOLVED IN: cytokinin mediated signaling; EXPRESSED IN: hydathode, sepal vascular system, leaf vascular system; CONTAINS InterPro DOMAIN/s: Response regulator, plant B-type (InterPro:IPR017053), CheY-like (InterPro:IPR011006), Homeodomain-like (InterPro:IPR009057), Signal transduction response regulator, receiver region (InterPro:IPR001789), Homeodomain-related (InterPro:IPR012287), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: ARR21 (ARABIDOPSIS RESPONSE REGULATOR 21); transcription factor/ two-component response regulator (TAIR:AT5G07210.1); Has 14168 Blast hits to 14115 proteins in 1334 species: Archae - 177; Bacteria - 10939; Metazoa - 28; Fungi - 78; Plants - 1092; Viruses - 0; Other Eukaryotes - 1854 (source: NCBI BLink).  protein_id AT2G27070.1p  transcript_id AT2G27070.1  protein_id AT2G27070.1p  transcript_id AT2G27070.1  
At2g27080	chr2:011566383	0.0	W/11566383-11567165	AT2G27080.1  CDS  gene_syn T20P8.13, T20P8_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product harpin-induced protein-related / HIN1-related / harpin-responsive protein-related  note harpin-induced protein-related / HIN1-related / harpin-responsive protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G21130.1); Has 711 Blast hits to 710 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 711; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G27080.1p  transcript_id AT2G27080.1  protein_id AT2G27080.1p  transcript_id AT2G27080.1  
At2g27080	chr2:011566383	0.0	W/11566383-11567165	AT2G27080.2  CDS  gene_syn T20P8.13, T20P8_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product harpin-induced protein-related / HIN1-related / harpin-responsive protein-related  note harpin-induced protein-related / HIN1-related / harpin-responsive protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G21130.1); Has 711 Blast hits to 710 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 711; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G27080.2p  transcript_id AT2G27080.2  protein_id AT2G27080.2p  transcript_id AT2G27080.2  
At2g27090	chr2:011569298	0.0	C/11569298-11570345,11569067-11569138,11568775-11568989,11568458-11568681,11567691-11568363	AT2G27090.1  CDS  gene_syn T20P8.14, T20P8_14  go_component plasma membrane|GO:0005886|14506206|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  product unknown protein  note unknown protein; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G39790.1); Has 656 Blast hits to 605 proteins in 117 species: Archae - 0; Bacteria - 13; Metazoa - 147; Fungi - 107; Plants - 277; Viruses - 15; Other Eukaryotes - 97 (source: NCBI BLink).  protein_id AT2G27090.1p  transcript_id AT2G27090.1  protein_id AT2G27090.1p  transcript_id AT2G27090.1  
At2g27100	chr2:011572587	0.0	W/11572587-11573002,11573214-11573314,11573562-11573619,11573958-11574032,11574117-11574191,11574286-11574333,11574484-11574552,11574642-11575433,11575514-11575562,11575678-11575937,11576046-11576204,11576297-11576357	AT2G27100.1  CDS  gene_syn SE, SERRATE, T20P8.15, T20P8_15  gene SE  function Identified as a leaf form mutant by Redei having serrated leaves. Further analysis of the single loss of function allele indicated pleiotropic effects extending to many aspects of shoot development such as taller meristems, alterations in phase transition, phyllotaxy and branching. Encodes a single zinc finger containing protein that is expressed in meristems and organ primordia.  go_component nucleolus|GO:0005730|15496452|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component nucleus|GO:0005634|11402159|ISS  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component nuclear speck|GO:0016607|17442570|IDA  go_process adaxial/abaxial pattern formation|GO:0009955|16222298|IMP  go_process RNA interference, production of ta-siRNAs|GO:0010267|16889646|IMP  go_process chromatin modification|GO:0016568|11402159|TAS  go_process primary microRNA processing|GO:0031053|16889646|IMP  go_process regulation of transcription|GO:0045449|11402159|TAS  go_process shoot development|GO:0048367|10607301|IMP  go_process meristem development|GO:0048507|16222298|IMP  go_function DNA binding|GO:0003677|11402159|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product SE (SERRATE); DNA binding / transcription factor  note SERRATE (SE); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 7 processes; LOCATED IN: cytosol, nuclear speck, nucleolus, nucleus, chloroplast; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); Has 5112 Blast hits to 4002 proteins in 373 species: Archae - 2; Bacteria - 415; Metazoa - 2690; Fungi - 830; Plants - 548; Viruses - 137; Other Eukaryotes - 490 (source: NCBI BLink).  protein_id AT2G27100.1p  transcript_id AT2G27100.1  protein_id AT2G27100.1p  transcript_id AT2G27100.1  
At2g27110	chr2:011578252	0.0	C/11578252-11580405,11578080-11578169,11577661-11577810,11577205-11577321,11576969-11577013	AT2G27110.1  CDS  gene_syn FAR1-related sequence 3, FRS3, T20P8.16, T20P8_16  gene FRS3  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process response to red or far red light|GO:0009639||ISS  product FRS3 (FAR1-related sequence 3); zinc ion binding  note FAR1-related sequence 3 (FRS3); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FRS5 (FAR1-related sequence 5); zinc ion binding (TAIR:AT4G38180.1); Has 763 Blast hits to 687 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 30; Plants - 732; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G27110.1p  transcript_id AT2G27110.1  protein_id AT2G27110.1p  transcript_id AT2G27110.1  
At2g27110	chr2:011578252	0.0	C/11578252-11580405,11578080-11578169,11577661-11577810,11577205-11577321,11576969-11577013	AT2G27110.2  CDS  gene_syn FAR1-related sequence 3, FRS3, T20P8.16, T20P8_16  gene FRS3  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process response to red or far red light|GO:0009639||ISS  product FRS3 (FAR1-related sequence 3); zinc ion binding  note FAR1-related sequence 3 (FRS3); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FRS5 (FAR1-related sequence 5); zinc ion binding (TAIR:AT4G38180.1); Has 763 Blast hits to 687 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 30; Plants - 732; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G27110.2p  transcript_id AT2G27110.2  protein_id AT2G27110.2p  transcript_id AT2G27110.2  
At2g27110	chr2:011580252	0.0	C/11580252-11580259,11578252-11579962,11578080-11578169,11577661-11577810,11577205-11577321,11576969-11577013	AT2G27110.3  CDS  gene_syn FAR1-related sequence 3, FRS3, T20P8.16, T20P8_16  gene FRS3  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process response to red or far red light|GO:0009639||ISS  product FRS3 (FAR1-related sequence 3); zinc ion binding  note FAR1-related sequence 3 (FRS3); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FRS5 (FAR1-related sequence 5); zinc ion binding (TAIR:AT4G38180.1); Has 641 Blast hits to 619 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 30; Plants - 610; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G27110.3p  transcript_id AT2G27110.3  protein_id AT2G27110.3p  transcript_id AT2G27110.3  
At2g27120	chr2:011581223	0.0	W/11581223-11581357,11581457-11581522,11581597-11581656,11581729-11581824,11582226-11582386,11582492-11582580,11582659-11582876,11583290-11583376,11583468-11583602,11583879-11584001,11584098-11584181,11584398-11584562,11584641-11584817,11585035-11585148,11585437-11585541,11585664-11585782,11585875-11586019,11586102-11586196,11586384-11586489,11586561-11586640,11586722-11586898,11587009-11587093,11587195-11587275,11587342-11587485,11587704-11587799,11587888-11588088,11588307-11588364,11588445-11588584,11588665-11589078,11589168-11589254,11589336-11589533,11589614-11589688,11589810-11590000,11590143-11590323,11590388-11590452,11590708-11590840,11590940-11591041,11591114-11591197,11591344-11591418,11591497-11591547,11591623-11591873,11591945-11591993,11592207-11592367,11592455-11592521,11592700-11592804,11592899-11593018,11593102-11593290,11593541-11593647,11593977-11594346	AT2G27120.1  CDS  gene_syn POL2B, T20P8.17, T20P8_17, TIL2, TILTED 2  gene TIL2  function Encodes a protein with similarity to DNA polymerase epsilon catalytic subunit. Based on yeast two hybrid analysis, not predicted to be a subunit of the DNA polymerase epsilon complex. No phenotype observed in homozygous mutant embryos or plants but in combination with TIL1-1/til1-1 heterozygotes arrest earlier than til1 homozygotes suggesting TIL2 functions redundantly with TIL1.  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_process DNA replication|GO:0006260||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed DNA polymerase activity|GO:0003887||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component epsilon DNA polymerase complex|GO:0008622|16212602|IPI  go_function DNA-directed DNA polymerase activity|GO:0003887||ISS  product TIL2 (TILTED 2); DNA binding / DNA-directed DNA polymerase/ nucleic acid binding / nucleotide binding / zinc ion binding  note TILTED 2 (TIL2); FUNCTIONS IN: DNA-directed DNA polymerase activity, DNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: DNA replication, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: epsilon DNA polymerase complex; EXPRESSED IN: sperm cell, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1744 (InterPro:IPR013697), DNA-directed DNA polymerase, family B, exonuclease (InterPro:IPR006133), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), DNA-directed DNA polymerase, family B (InterPro:IPR006172), DNA-directed DNA polymerase, family B, conserved region (InterPro:IPR006134); BEST Arabidopsis thaliana protein match is: TIL1 (TILTED 1); DNA binding / DNA-directed DNA polymerase/ nucleic acid binding / nucleotide binding / zinc ion binding (TAIR:AT1G08260.2); Has 1736 Blast hits to 1464 proteins in 508 species: Archae - 282; Bacteria - 519; Metazoa - 265; Fungi - 234; Plants - 39; Viruses - 73; Other Eukaryotes - 324 (source: NCBI BLink).  protein_id AT2G27120.1p  transcript_id AT2G27120.1  protein_id AT2G27120.1p  transcript_id AT2G27120.1  
At2g27130	chr2:011595379	0.0	W/11595379-11595742,11596101-11596151,11596280-11596395	AT2G27130.1  CDS  gene_syn T20P8.18, T20P8_18  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to plasma membrane, anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT3G43720.2); Has 234 Blast hits to 234 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 234; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G27130.1p  transcript_id AT2G27130.1  protein_id AT2G27130.1p  transcript_id AT2G27130.1  
At2g27140	chr2:011599153	0.0	C/11599153-11599264,11598496-11599058	AT2G27140.1  CDS  gene_syn T20P8.19, T20P8_19  go_component membrane|GO:0016020|17432890|IDA  go_process response to heat|GO:0009408||ISS  go_function molecular_function|GO:0003674||ND  product heat shock family protein  note heat shock family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to heat; LOCATED IN: membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: heat shock family protein (TAIR:AT5G20970.1); Has 400 Blast hits to 398 proteins in 72 species: Archae - 0; Bacteria - 28; Metazoa - 7; Fungi - 0; Plants - 348; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT2G27140.1p  transcript_id AT2G27140.1  protein_id AT2G27140.1p  transcript_id AT2G27140.1  
At2g27145	chr2:011600637	0.0	C/11600637-11600700,11600193-11600368	AT2G27145.1  CDS  gene_syn LCR9, Low-molecular-weight cysteine-rich 9  gene LCR9  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR9 (Low-molecular-weight cysteine-rich 9)  note Low-molecular-weight cysteine-rich 9 (LCR9); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); Has 26 Blast hits to 26 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G27145.1p  transcript_id AT2G27145.1  protein_id AT2G27145.1p  transcript_id AT2G27145.1  
At2g27150	chr2:011601952	0.0	W/11601952-11602078,11602330-11603940,11604046-11604305,11604384-11604593,11604682-11604900,11604984-11605952,11606042-11606137,11606210-11606308,11606404-11606593,11606797-11607014	AT2G27150.1  CDS  gene_syn AAO3, ABSCISIC ALDEHYDE OXIDASE 3, Abscisic ALDEHYDE OXIDASE 3, F20F1.2, F20F1_2  gene AAO3  function Encodes the aldehyde oxidase delta isoform catalyzing the final step in abscisic acid biosynthesis.  go_component cellular_component|GO:0005575||ND  go_process abscisic acid biosynthetic process|GO:0009688|11050171|IMP  go_function aldehyde oxidase activity|GO:0004031|10972874|IDA  go_function abscisic aldehyde oxidase activity|GO:0010293|11050171|IDA  go_function indole-3-acetaldehyde oxidase activity|GO:0050302|11050171|IDA  product AAO3 (Abscisic ALDEHYDE OXIDASE 3); abscisic aldehyde oxidase/ aldehyde oxidase/ indole-3-acetaldehyde oxidase  note Abscisic ALDEHYDE OXIDASE 3 (AAO3); FUNCTIONS IN: abscisic aldehyde oxidase activity, indole-3-acetaldehyde oxidase activity, aldehyde oxidase activity; INVOLVED IN: abscisic acid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde oxidase/xanthine dehydrogenase (InterPro:IPR016208), Ferredoxin (InterPro:IPR001041), Molybdopterin dehydrogenase, FAD-binding (InterPro:IPR002346), Oxidoreductase, molybdopterin binding (InterPro:IPR000572), [2Fe-2S]-binding (InterPro:IPR002888), FAD-binding, type 2 (InterPro:IPR016166), CO dehydrogenase flavoprotein, C-terminal (InterPro:IPR005107), 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 (InterPro:IPR016169), Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead (InterPro:IPR000674), Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding (InterPro:IPR008274); BEST Arabidopsis thaliana protein match is: AAO4 (ARABIDOPSIS ALDEHYDE OXIDASE 4); aldehyde oxidase/ aryl-aldehyde oxidase (TAIR:AT1G04580.1); Has 13345 Blast hits to 12932 proteins in 777 species: Archae - 163; Bacteria - 6311; Metazoa - 962; Fungi - 72; Plants - 144; Viruses - 0; Other Eukaryotes - 5693 (source: NCBI BLink).  protein_id AT2G27150.1p  transcript_id AT2G27150.1  protein_id AT2G27150.1p  transcript_id AT2G27150.1  
At2g27150	chr2:011601952	0.0	W/11601952-11602078,11602330-11603940,11604046-11604305,11604384-11604593,11604682-11604900,11604984-11605952,11606042-11606137,11606210-11606308,11606404-11606593,11606797-11607014	AT2G27150.2  CDS  gene_syn AAO3, ABSCISIC ALDEHYDE OXIDASE 3, Abscisic ALDEHYDE OXIDASE 3, F20F1.2, F20F1_2  gene AAO3  function Encodes the aldehyde oxidase delta isoform catalyzing the final step in abscisic acid biosynthesis.  go_component cellular_component|GO:0005575||ND  go_process abscisic acid biosynthetic process|GO:0009688|11050171|IMP  go_function aldehyde oxidase activity|GO:0004031|10972874|IDA  go_function abscisic aldehyde oxidase activity|GO:0010293|11050171|IDA  go_function indole-3-acetaldehyde oxidase activity|GO:0050302|11050171|IDA  product AAO3 (Abscisic ALDEHYDE OXIDASE 3); abscisic aldehyde oxidase/ aldehyde oxidase/ indole-3-acetaldehyde oxidase  note Abscisic ALDEHYDE OXIDASE 3 (AAO3); FUNCTIONS IN: abscisic aldehyde oxidase activity, indole-3-acetaldehyde oxidase activity, aldehyde oxidase activity; INVOLVED IN: abscisic acid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde oxidase/xanthine dehydrogenase (InterPro:IPR016208), Ferredoxin (InterPro:IPR001041), Molybdopterin dehydrogenase, FAD-binding (InterPro:IPR002346), Oxidoreductase, molybdopterin binding (InterPro:IPR000572), [2Fe-2S]-binding (InterPro:IPR002888), FAD-binding, type 2 (InterPro:IPR016166), CO dehydrogenase flavoprotein, C-terminal (InterPro:IPR005107), 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 (InterPro:IPR016169), Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead (InterPro:IPR000674), Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding (InterPro:IPR008274); BEST Arabidopsis thaliana protein match is: AAO4 (ARABIDOPSIS ALDEHYDE OXIDASE 4); aldehyde oxidase/ aryl-aldehyde oxidase (TAIR:AT1G04580.1); Has 13345 Blast hits to 12932 proteins in 777 species: Archae - 163; Bacteria - 6311; Metazoa - 962; Fungi - 72; Plants - 144; Viruses - 0; Other Eukaryotes - 5693 (source: NCBI BLink).  protein_id AT2G27150.2p  transcript_id AT2G27150.2  protein_id AT2G27150.2p  transcript_id AT2G27150.2  
At2g27160	chr2:011608107	0.0	C/11608107-11608147,11607678-11608022,11607582-11607594	AT2G27160.2  CDS  gene_syn F20F1.3, F20F1_3  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G27160.2p  transcript_id AT2G27160.2  protein_id AT2G27160.2p  transcript_id AT2G27160.2  
At2g27160	chr2:011608107	0.0	C/11608107-11608166,11607965-11608022,11607678-11607873,11607582-11607594	AT2G27160.1  CDS  gene_syn F20F1.3, F20F1_3  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G27160.1p  transcript_id AT2G27160.1  protein_id AT2G27160.1p  transcript_id AT2G27160.1  
At2g27170	chr2:011617050	0.0	C/11617050-11617064,11616864-11616939,11616718-11616756,11616550-11616617,11616376-11616447,11615807-11615886,11615641-11615719,11615386-11615503,11615110-11615285,11614601-11614846,11614297-11614418,11613880-11614024,11613517-11613689,11613338-11613437,11612976-11613112,11612674-11612875,11612463-11612550,11612227-11612376,11611958-11612109,11611665-11611856,11611309-11611492,11611132-11611202,11610909-11611060,11610536-11610704,11610308-11610454,11609784-11609882,11609319-11609681	AT2G27170.1  CDS  gene_syn SMC3, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, T22O13.6, TITAN7, TTN7  gene TTN7  function cohesin  go_process chromosome organization|GO:0051276||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component nucleus|GO:0005634||ISS  go_component cohesin complex|GO:0008278|11846874|ISS  go_process chromosome segregation|GO:0007059||ISS  go_function ATP binding|GO:0005524||ISS  product TTN7 (TITAN7); ATP binding / protein binding  note TITAN7 (TTN7); FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: chromosome segregation, chromosome organization; LOCATED IN: cohesin complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2); transporter (TAIR:AT5G62410.1); Has 126653 Blast hits to 59203 proteins in 2171 species: Archae - 1243; Bacteria - 15524; Metazoa - 59145; Fungi - 8389; Plants - 3847; Viruses - 660; Other Eukaryotes - 37845 (source: NCBI BLink).  protein_id AT2G27170.1p  transcript_id AT2G27170.1  protein_id AT2G27170.1p  transcript_id AT2G27170.1  
At2g27170	chr2:011617050	0.0	C/11617050-11617064,11616864-11616939,11616718-11616756,11616550-11616617,11616376-11616447,11615807-11615886,11615641-11615719,11615386-11615503,11615110-11615285,11614601-11614846,11614297-11614418,11613880-11614024,11613517-11613689,11613338-11613437,11612976-11613112,11612674-11612875,11612463-11612550,11612227-11612376,11611958-11612109,11611665-11611856,11611309-11611492,11611132-11611202,11610909-11611060,11610536-11610704,11610308-11610454,11609784-11609882,11609319-11609681	AT2G27170.2  CDS  gene_syn SMC3, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, T22O13.6, TITAN7, TTN7  gene TTN7  function cohesin  go_process chromosome organization|GO:0051276||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component nucleus|GO:0005634||ISS  go_component cohesin complex|GO:0008278|11846874|ISS  go_process chromosome segregation|GO:0007059||ISS  go_function ATP binding|GO:0005524||ISS  product TTN7 (TITAN7); ATP binding / protein binding  note TITAN7 (TTN7); FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: chromosome segregation, chromosome organization; LOCATED IN: cohesin complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2); transporter (TAIR:AT5G62410.1); Has 126653 Blast hits to 59203 proteins in 2171 species: Archae - 1243; Bacteria - 15524; Metazoa - 59145; Fungi - 8389; Plants - 3847; Viruses - 660; Other Eukaryotes - 37845 (source: NCBI BLink).  protein_id AT2G27170.2p  transcript_id AT2G27170.2  protein_id AT2G27170.2p  transcript_id AT2G27170.2  
At2g27180	chr2:011620473	0.0	W/11620473-11620970	AT2G27180.1  CDS  gene_syn T22O13.5, T22O13_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 58 Blast hits to 58 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G27180.1p  transcript_id AT2G27180.1  protein_id AT2G27180.1p  transcript_id AT2G27180.1  
At2g27190	chr2:011623052	0.0	C/11623052-11623438,11622778-11622889,11622450-11622679,11622232-11622370,11621940-11622160,11621732-11621853,11621400-11621598	AT2G27190.1  CDS  gene_syn ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, ATPAP1, ATPAP12, PAP1, PAP12, PURPLE ACID PHOSPHATASE 1, PURPLE ACID PHOSPHATASE 12, SECRETED PURPLE ACID PHOSPHATASE PRECURSOR, T22O13.4, T22O13_4  gene PAP12  function secreted purple acid phosphatase precursor  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process cellular response to phosphate starvation|GO:0016036|12172020|IEP  go_function acid phosphatase activity|GO:0003993|12021284|ISS  go_function acid phosphatase activity|GO:0003993|16244908|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PAP12 (PURPLE ACID PHOSPHATASE 12); acid phosphatase/ protein serine/threonine phosphatase  note PURPLE ACID PHOSPHATASE 12 (PAP12); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: cellular response to phosphate starvation; LOCATED IN: plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Purple acid phosphatase, N-terminal (InterPro:IPR015914), Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: PAP10 (PURPLE ACID PHOSPHATASE 10); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT2G16430.2); Has 1221 Blast hits to 1209 proteins in 263 species: Archae - 2; Bacteria - 314; Metazoa - 171; Fungi - 60; Plants - 449; Viruses - 0; Other Eukaryotes - 225 (source: NCBI BLink).  protein_id AT2G27190.1p  transcript_id AT2G27190.1  protein_id AT2G27190.1p  transcript_id AT2G27190.1  
At2g27200	chr2:011625449	0.0	W/11625449-11625675,11625765-11625953,11626489-11626582,11626683-11626739,11626831-11626910,11626993-11627959	AT2G27200.1  CDS  gene_syn T22O13.3, T22O13_3  go_component intracellular|GO:0005622||IEA  go_function GTP binding|GO:0005525||IEA  go_process biological_process|GO:0008150||ND  go_function GTP binding|GO:0005525||ISS  product GTP-binding family protein  note GTP-binding family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding (InterPro:IPR005289), GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: GTP-binding family protein (TAIR:AT1G08410.1); Has 4367 Blast hits to 4266 proteins in 1052 species: Archae - 75; Bacteria - 2296; Metazoa - 556; Fungi - 319; Plants - 132; Viruses - 0; Other Eukaryotes - 989 (source: NCBI BLink).  protein_id AT2G27200.1p  transcript_id AT2G27200.1  protein_id AT2G27200.1p  transcript_id AT2G27200.1  
At2g27210	chr2:011630188	0.0	W/11630188-11630623,11630767-11630827,11630925-11631003,11631115-11631194,11631286-11631380,11631469-11631568,11631663-11631732,11632014-11632115,11632193-11632274,11632666-11632845,11633192-11633459,11633543-11633780,11633903-11634073,11634354-11634592,11634668-11634752,11634845-11634943,11635010-11635209,11635293-11635368,11635649-11635784,11635881-11636020,11636099-11636182	AT2G27210.1  CDS  gene_syn BRI1 SUPPRESSOR 1 (BSU1)-LIKE 3, BSL3, T22O13.2, T22O13_2  gene BSL3  go_component plasma membrane|GO:0005886|17317660|IDA  go_function phosphoprotein phosphatase activity|GO:0004721||IEA  go_function iron ion binding|GO:0005506||IEA  go_function hydrolase activity|GO:0016787||IEA  go_function manganese ion binding|GO:0030145||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product kelch repeat-containing serine/threonine phosphoesterase family protein  note BRI1 SUPPRESSOR 1 (BSU1)-LIKE 3 (BSL3); FUNCTIONS IN: hydrolase activity, manganese ion binding, protein serine/threonine phosphatase activity, phosphoprotein phosphatase activity, iron ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Kelch repeat type 1 (InterPro:IPR006652), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 2 (InterPro:IPR011498), Serine/threonine protein phosphatase, BSU1 (InterPro:IPR012391), Kelch-type beta propeller (InterPro:IPR015915), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: kelch repeat-containing protein / serine/threonine phosphoesterase family protein (TAIR:AT1G08420.1); Has 8485 Blast hits to 6970 proteins in 411 species: Archae - 51; Bacteria - 250; Metazoa - 3427; Fungi - 1247; Plants - 1388; Viruses - 3; Other Eukaryotes - 2119 (source: NCBI BLink).  protein_id AT2G27210.1p  transcript_id AT2G27210.1  protein_id AT2G27210.1p  transcript_id AT2G27210.1  
At2g27220	chr2:011639103	0.0	C/11639103-11639537,11638537-11638862,11638300-11638360,11637306-11637779	AT2G27220.1  CDS  gene_syn BELL1-like homeodomain 5, BLH5, T22O13.1, T22O13_1  gene BLH5  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product BLH5 (BELL1-like homeodomain 5); DNA binding / transcription factor  note BELL1-like homeodomain 5 (BLH5); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: leaf whorl, embryo, flower; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BLH1 (BEL1-LIKE HOMEODOMAIN 1); DNA binding / protein heterodimerization/ protein homodimerization/ transcription factor (TAIR:AT2G35940.3); Has 4112 Blast hits to 4112 proteins in 264 species: Archae - 0; Bacteria - 0; Metazoa - 1794; Fungi - 189; Plants - 2027; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).  protein_id AT2G27220.1p  transcript_id AT2G27220.1  protein_id AT2G27220.1p  transcript_id AT2G27220.1  
At2g27229	chr2:011649183	0.0	W/11649183-11649557	AT2G27229.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 40 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G27229.1p  transcript_id AT2G27229.1  protein_id AT2G27229.1p  transcript_id AT2G27229.1  
At2g27228	chr2:011650592	0.0	W/11650592-11650696	AT2G27228.1  CDS  gene_syn CPuORF6, Conserved peptide upstream open reading frame 6  gene CPuORF6  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF6 represents a conserved upstream opening reading frame relative to major ORF AT2G27230.1  product CPuORF6 (Conserved peptide upstream open reading frame 6)  note Conserved peptide upstream open reading frame 6 (CPuORF6); Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G27228.1p  transcript_id AT2G27228.1  protein_id AT2G27228.1p  transcript_id AT2G27228.1  
At2g27230	chr2:011650895	0.0	W/11650895-11650989,11651448-11651727,11651839-11651898,11651977-11653002,11653095-11653196,11653270-11653383,11653464-11653589,11653691-11653840	AT2G27230.1  CDS  gene_syn F12K2.19, F12K2_19, LHW, LONESOME HIGHWAY  gene LHW  function Encodes a nuclear-localized transcriptional activator with weak sequence similarity to basic helix-loop-helix(bHLH)-domain proteins. It promotes the production of stele cells in root meristems and is required to establish and maintain the normal vascular cell number and pattern in primary and lateral roots.  go_component nucleus|GO:0005634|17626058|IDA  go_process maintenance of root meristem identity|GO:0010078|17626058|IMP  go_process stele development|GO:0010479|17626058|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process root development|GO:0048364|17626058|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription activator activity|GO:0016563|17626058|IDA  go_function protein homodimerization activity|GO:0042803|17626058|IPI  product LHW (LONESOME HIGHWAY); protein homodimerization/ transcription activator/ transcription factor  note LONESOME HIGHWAY (LHW); FUNCTIONS IN: transcription factor activity, protein homodimerization activity, transcription activator activity; INVOLVED IN: stele development, maintenance of root meristem identity, root development, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: sperm cell, primary root tip; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT1G64625.2); Has 263 Blast hits to 227 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 261; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G27230.1p  transcript_id AT2G27230.1  protein_id AT2G27230.1p  transcript_id AT2G27230.1  
At2g27230	chr2:011650895	0.0	W/11650895-11650989,11651448-11651727,11651839-11651898,11651977-11653002,11653095-11653196,11653270-11653383,11653464-11653589,11653691-11653840	AT2G27230.2  CDS  gene_syn F12K2.19, F12K2_19, LHW, LONESOME HIGHWAY  gene LHW  function Encodes a nuclear-localized transcriptional activator with weak sequence similarity to basic helix-loop-helix(bHLH)-domain proteins. It promotes the production of stele cells in root meristems and is required to establish and maintain the normal vascular cell number and pattern in primary and lateral roots.  go_component nucleus|GO:0005634|17626058|IDA  go_process maintenance of root meristem identity|GO:0010078|17626058|IMP  go_process stele development|GO:0010479|17626058|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process root development|GO:0048364|17626058|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription activator activity|GO:0016563|17626058|IDA  go_function protein homodimerization activity|GO:0042803|17626058|IPI  product LHW (LONESOME HIGHWAY); protein homodimerization/ transcription activator/ transcription factor  note LONESOME HIGHWAY (LHW); FUNCTIONS IN: transcription factor activity, protein homodimerization activity, transcription activator activity; INVOLVED IN: stele development, maintenance of root meristem identity, root development, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: sperm cell, primary root tip; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT1G64625.2); Has 263 Blast hits to 227 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 261; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G27230.2p  transcript_id AT2G27230.2  protein_id AT2G27230.2p  transcript_id AT2G27230.2  
At2g27240	chr2:011659579	0.0	W/11659579-11659780,11660053-11660193,11660392-11660716,11661228-11661375,11661467-11661610,11661848-11662408	AT2G27240.1  CDS  gene_syn F12K2.18, F12K2_18  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: embryo, male gametophyte, sepal, flower, seed; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0005 (InterPro:IPR006214); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G08440.1); Has 269 Blast hits to 268 proteins in 45 species: Archae - 0; Bacteria - 39; Metazoa - 0; Fungi - 2; Plants - 211; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT2G27240.1p  transcript_id AT2G27240.1  protein_id AT2G27240.1p  transcript_id AT2G27240.1  
At2g27250	chr2:011665186	0.0	C/11665186-11665470	AT2G27250.1  CDS  gene_syn CLAVATA3, CLV3, F12K2.17, F12K2_17  gene CLV3  function One of the three CLAVATA genes controlling the size of the shoot apical meristem (SAM) in Arabidopsis. Belongs to a large gene family called CLE for CLAVATA3/ESR-related. Encodes a stem cell-specific protein CLV3 presumed to be a precursor of a secreted peptide hormone. The deduced ORF encodes a 96-amino acid protein with an 18-amino acid N-terminal signal peptide. The functional form of CLV3 (MCLV3) is a posttranscriptionally modified 12-amino acid peptide, in which two of the three prolines were modified to hydroxyproline. CLV3 binds the ectodomain of the CLAVATA1 (CLV1) receptor-kinase. Regulates shoot and floral meristem development. Required for CLAVATA1 receptor-like kinase assembly into a signaling complex that includes KAPP and a Rho-related protein. It restricts its own domain of expression, the central zone (CZ) of the shoot apical meristem (SAM), by preventing differentiation of peripheral zone cells, which surround the CZ, into CZ cells and restricts overall SAM size by a separate, long-range effect on cell division rate. CLE domain of CLV3 is sufficient for function.  go_component apoplast|GO:0048046|12034890|IDA  go_process signal transduction|GO:0007165|10915624|IMP  go_process regulation of meristem organization|GO:0009934|16902141|IDA  go_process cellular component organization|GO:0016043|10915624|IMP  go_process cell differentiation|GO:0030154|10915624|IMP  go_process cell-cell signaling involved in cell fate specification|GO:0045168|10915623|IGI  go_process response to ethanol|GO:0045471|16603652|IEP  go_process meristem development|GO:0048507|16603652|IMP  go_function receptor binding|GO:0005102|10915624|IPI  go_function protein binding|GO:0005515|10915623|IPI  go_function kinase activator activity|GO:0019209|10915624|IPI  product CLV3 (CLAVATA3); kinase activator/ protein binding / receptor binding  note CLAVATA3 (CLV3); FUNCTIONS IN: protein binding, kinase activator activity, receptor binding; INVOLVED IN: in 7 processes; LOCATED IN: apoplast; EXPRESSED IN: central zone, apical meristem, floral meristem; Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G27250.1p  transcript_id AT2G27250.1  protein_id AT2G27250.1p  transcript_id AT2G27250.1  
At2g27250	chr2:011665530	0.0	C/11665530-11665631,11665186-11665362	AT2G27250.2  CDS  gene_syn CLAVATA3, CLV3, F12K2.17, F12K2_17  gene CLV3  function One of the three CLAVATA genes controlling the size of the shoot apical meristem (SAM) in Arabidopsis. Belongs to a large gene family called CLE for CLAVATA3/ESR-related. Encodes a stem cell-specific protein CLV3 presumed to be a precursor of a secreted peptide hormone. The deduced ORF encodes a 96-amino acid protein with an 18-amino acid N-terminal signal peptide. The functional form of CLV3 (MCLV3) is a posttranscriptionally modified 12-amino acid peptide, in which two of the three prolines were modified to hydroxyproline. CLV3 binds the ectodomain of the CLAVATA1 (CLV1) receptor-kinase. Regulates shoot and floral meristem development. Required for CLAVATA1 receptor-like kinase assembly into a signaling complex that includes KAPP and a Rho-related protein. It restricts its own domain of expression, the central zone (CZ) of the shoot apical meristem (SAM), by preventing differentiation of peripheral zone cells, which surround the CZ, into CZ cells and restricts overall SAM size by a separate, long-range effect on cell division rate. CLE domain of CLV3 is sufficient for function.  go_component apoplast|GO:0048046|12034890|IDA  go_process signal transduction|GO:0007165|10915624|IMP  go_process regulation of meristem organization|GO:0009934|16902141|IDA  go_process cellular component organization|GO:0016043|10915624|IMP  go_process cell differentiation|GO:0030154|10915624|IMP  go_process cell-cell signaling involved in cell fate specification|GO:0045168|10915623|IGI  go_process response to ethanol|GO:0045471|16603652|IEP  go_process meristem development|GO:0048507|16603652|IMP  go_function receptor binding|GO:0005102|10915624|IPI  go_function protein binding|GO:0005515|10915623|IPI  go_function kinase activator activity|GO:0019209|10915624|IPI  product CLV3 (CLAVATA3); kinase activator/ protein binding / receptor binding  note CLAVATA3 (CLV3); FUNCTIONS IN: protein binding, kinase activator activity, receptor binding; INVOLVED IN: in 7 processes; LOCATED IN: apoplast; EXPRESSED IN: central zone, apical meristem, floral meristem; Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G27250.2p  transcript_id AT2G27250.2  protein_id AT2G27250.2p  transcript_id AT2G27250.2  
At2g27250	chr2:011665678	0.0	C/11665678-11665744,11665530-11665576,11665186-11665362	AT2G27250.3  CDS  gene_syn CLAVATA3, CLV3, F12K2.17, F12K2_17  gene CLV3  function One of the three CLAVATA genes controlling the size of the shoot apical meristem (SAM) in Arabidopsis. Belongs to a large gene family called CLE for CLAVATA3/ESR-related. Encodes a stem cell-specific protein CLV3 presumed to be a precursor of a secreted peptide hormone. The deduced ORF encodes a 96-amino acid protein with an 18-amino acid N-terminal signal peptide. The functional form of CLV3 (MCLV3) is a posttranscriptionally modified 12-amino acid peptide, in which two of the three prolines were modified to hydroxyproline. CLV3 binds the ectodomain of the CLAVATA1 (CLV1) receptor-kinase. Regulates shoot and floral meristem development. Required for CLAVATA1 receptor-like kinase assembly into a signaling complex that includes KAPP and a Rho-related protein. It restricts its own domain of expression, the central zone (CZ) of the shoot apical meristem (SAM), by preventing differentiation of peripheral zone cells, which surround the CZ, into CZ cells and restricts overall SAM size by a separate, long-range effect on cell division rate. CLE domain of CLV3 is sufficient for function.  go_component apoplast|GO:0048046|12034890|IDA  go_process signal transduction|GO:0007165|10915624|IMP  go_process regulation of meristem organization|GO:0009934|16902141|IDA  go_process cellular component organization|GO:0016043|10915624|IMP  go_process cell differentiation|GO:0030154|10915624|IMP  go_process cell-cell signaling involved in cell fate specification|GO:0045168|10915623|IGI  go_process response to ethanol|GO:0045471|16603652|IEP  go_process meristem development|GO:0048507|16603652|IMP  go_function receptor binding|GO:0005102|10915624|IPI  go_function protein binding|GO:0005515|10915623|IPI  go_function kinase activator activity|GO:0019209|10915624|IPI  product CLV3 (CLAVATA3); kinase activator/ protein binding / receptor binding  note CLAVATA3 (CLV3); FUNCTIONS IN: protein binding, kinase activator activity, receptor binding; INVOLVED IN: in 7 processes; LOCATED IN: apoplast; EXPRESSED IN: central zone, apical meristem, floral meristem; Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G27250.3p  transcript_id AT2G27250.3  protein_id AT2G27250.3p  transcript_id AT2G27250.3  
At2g27260	chr2:011669769	0.0	W/11669769-11670500	AT2G27260.1  CDS  gene_syn F12K2.16, F12K2_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); Has 584 Blast hits to 584 proteins in 25 species: Archae - 2; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 578; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G27260.1p  transcript_id AT2G27260.1  protein_id AT2G27260.1p  transcript_id AT2G27260.1  
At2g27270	chr2:011672346	0.0	W/11672346-11672657,11672751-11673134	AT2G27270.1  CDS  gene_syn F12K2.15, F12K2_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: hairpin-responsive protein, putative (HIN1) (TAIR:AT5G06330.1); Has 195 Blast hits to 195 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 195; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G27270.1p  transcript_id AT2G27270.1  protein_id AT2G27270.1p  transcript_id AT2G27270.1  
At2g27280	chr2:011675029	0.0	C/11675029-11675613,11674804-11674926,11674495-11674713,11673826-11674182	AT2G27280.1  CDS  gene_syn F12K2.14, F12K2_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2040, coiled-coil (InterPro:IPR018612); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G27285.1); Has 15790 Blast hits to 10504 proteins in 614 species: Archae - 46; Bacteria - 981; Metazoa - 7080; Fungi - 1248; Plants - 412; Viruses - 54; Other Eukaryotes - 5969 (source: NCBI BLink).  protein_id AT2G27280.1p  transcript_id AT2G27280.1  protein_id AT2G27280.1p  transcript_id AT2G27280.1  
At2g27285	chr2:011677739	0.0	C/11677739-11677897,11677529-11677651,11676878-11677096,11676079-11676549	AT2G27285.1  CDS  product unknown protein  note unknown protein; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2040, coiled-coil (InterPro:IPR018612); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G27280.1); Has 35706 Blast hits to 21282 proteins in 1150 species: Archae - 208; Bacteria - 3585; Metazoa - 16311; Fungi - 2551; Plants - 911; Viruses - 174; Other Eukaryotes - 11966 (source: NCBI BLink).  protein_id AT2G27285.1p  transcript_id AT2G27285.1  protein_id AT2G27285.1p  transcript_id AT2G27285.1  
At2g27290	chr2:011679529	0.0	C/11679529-11679765,11678845-11679042,11678586-11678756	AT2G27290.1  CDS  gene_syn F12K2.13, F12K2_13  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1279 (InterPro:IPR009688); Has 155 Blast hits to 155 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT2G27290.1p  transcript_id AT2G27290.1  protein_id AT2G27290.1p  transcript_id AT2G27290.1  
At2g27300	chr2:011681775	0.0	C/11681775-11681955,11681448-11681701,11681178-11681375,11680417-11680791	AT2G27300.1  CDS  gene_syn ANAC040, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 40, F12K2.12, F12K2_12, NTL8, NTM1-LIKE 8  gene NTL8  go_component plasma membrane|GO:0005886|17410378|IDA  go_process multicellular organismal development|GO:0007275||ISS  go_process response to salt stress|GO:0009651|18363782|IMP  go_process seed germination|GO:0009845|18363782|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product NTL8 (NTM1-LIKE 8); transcription factor  note NTM1-LIKE 8 (NTL8); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, response to salt stress, seed germination; LOCATED IN: plasma membrane; EXPRESSED IN: stem, vascular tissue, cauline leaf, inflorescence, embryo proper; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac060 (Arabidopsis NAC domain containing protein 60); transcription factor (TAIR:AT3G44290.1); Has 1493 Blast hits to 1490 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1493; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G27300.1p  transcript_id AT2G27300.1  protein_id AT2G27300.1p  transcript_id AT2G27300.1  
At2g27310	chr2:011683954	0.0	C/11683954-11684967	AT2G27310.1  CDS  gene_syn F12K2.11, F12K2_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G36090.1); Has 47 Blast hits to 47 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G27310.1p  transcript_id AT2G27310.1  protein_id AT2G27310.1p  transcript_id AT2G27310.1  
At2g27315	chr2:011689591	0.0	C/11689591-11689953	AT2G27315.1  CDS  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52975.1); Has 74 Blast hits to 69 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G27315.1p  transcript_id AT2G27315.1  protein_id AT2G27315.1p  transcript_id AT2G27315.1  
At2g27320	chr2:011692900	0.0	W/11692900-11692971,11693054-11693137,11693235-11693384,11693481-11693645,11693750-11693803,11693941-11694090,11694335-11694631	AT2G27320.1  CDS  gene_syn F12K2.10, F12K2_10  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38255.1); Has 393 Blast hits to 377 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 10; Plants - 379; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G27320.1p  transcript_id AT2G27320.1  protein_id AT2G27320.1p  transcript_id AT2G27320.1  
At2g27330	chr2:011696485	0.0	C/11696485-11696563,11696022-11696090,11695749-11695855,11695350-11695445	AT2G27330.1  CDS  gene_syn F12K2.9  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein, putative (TAIR:AT5G06210.1); Has 13544 Blast hits to 10922 proteins in 517 species: Archae - 8; Bacteria - 694; Metazoa - 8320; Fungi - 1342; Plants - 2096; Viruses - 0; Other Eukaryotes - 1084 (source: NCBI BLink).  protein_id AT2G27330.1p  transcript_id AT2G27330.1  protein_id AT2G27330.1p  transcript_id AT2G27330.1  
At2g27340	chr2:011697449	0.0	W/11697449-11697554,11697648-11697696,11697784-11697854,11698023-11698087,11698183-11698227,11698318-11698398,11698475-11698542,11698618-11698666,11698773-11698927,11699033-11699120	AT2G27340.2  CDS  gene_syn F12K2.8  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: N-acetylglucosaminyl phosphatidylinositol deacetylase (InterPro:IPR003737); BEST Arabidopsis thaliana protein match is: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-related (TAIR:AT3G58130.2); Has 332 Blast hits to 330 proteins in 157 species: Archae - 0; Bacteria - 44; Metazoa - 93; Fungi - 108; Plants - 28; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT2G27340.2p  transcript_id AT2G27340.2  protein_id AT2G27340.2p  transcript_id AT2G27340.2  
At2g27340	chr2:011697449	0.0	W/11697449-11697554,11697648-11697696,11697784-11697854,11698023-11698087,11698183-11698227,11698318-11698398,11698475-11698542,11698618-11698666,11698773-11698927,11699033-11699120	AT2G27340.3  CDS  gene_syn F12K2.8  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: N-acetylglucosaminyl phosphatidylinositol deacetylase (InterPro:IPR003737); BEST Arabidopsis thaliana protein match is: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-related (TAIR:AT3G58130.2); Has 332 Blast hits to 330 proteins in 157 species: Archae - 0; Bacteria - 44; Metazoa - 93; Fungi - 108; Plants - 28; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT2G27340.3p  transcript_id AT2G27340.3  protein_id AT2G27340.3p  transcript_id AT2G27340.3  
At2g27340	chr2:011697449	0.0	W/11697449-11697554,11697648-11697696,11697784-11697854,11698023-11698087,11698183-11698227,11698318-11698398,11698475-11698542,11698618-11698666,11698773-11698927,11699033-11699120	AT2G27340.4  CDS  gene_syn F12K2.8  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: N-acetylglucosaminyl phosphatidylinositol deacetylase (InterPro:IPR003737); BEST Arabidopsis thaliana protein match is: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-related (TAIR:AT3G58130.2); Has 332 Blast hits to 330 proteins in 157 species: Archae - 0; Bacteria - 44; Metazoa - 93; Fungi - 108; Plants - 28; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT2G27340.4p  transcript_id AT2G27340.4  protein_id AT2G27340.4p  transcript_id AT2G27340.4  
At2g27340	chr2:011697662	0.0	W/11697662-11697696,11697784-11697854,11698023-11698087,11698183-11698227,11698318-11698398,11698475-11698542,11698618-11698666,11698773-11698927,11699033-11699120	AT2G27340.1  CDS  gene_syn F12K2.8  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: N-acetylglucosaminyl phosphatidylinositol deacetylase (InterPro:IPR003737); BEST Arabidopsis thaliana protein match is: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-related (TAIR:AT3G58130.2); Has 325 Blast hits to 323 proteins in 156 species: Archae - 0; Bacteria - 42; Metazoa - 92; Fungi - 108; Plants - 28; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT2G27340.1p  transcript_id AT2G27340.1  protein_id AT2G27340.1p  transcript_id AT2G27340.1  
At2g27350	chr2:011701764	0.0	C/11701764-11702363,11701523-11701684,11700930-11701007,11700765-11700843,11700529-11700674,11700336-11700401,11700081-11700252,11699780-11699994	AT2G27350.1  CDS  gene_syn F12K2.7, F12K2_7  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function cysteine-type peptidase activity|GO:0008234||ISS  product OTU-like cysteine protease family protein  note OTU-like cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: SEC-C motif-containing protein / OTU-like cysteine protease family protein (TAIR:AT5G67170.2); Has 1998 Blast hits to 1133 proteins in 160 species: Archae - 0; Bacteria - 20; Metazoa - 691; Fungi - 183; Plants - 192; Viruses - 12; Other Eukaryotes - 900 (source: NCBI BLink).  protein_id AT2G27350.1p  transcript_id AT2G27350.1  protein_id AT2G27350.1p  transcript_id AT2G27350.1  
At2g27350	chr2:011701764	0.0	C/11701764-11702363,11701523-11701684,11700930-11701007,11700765-11700843,11700529-11700674,11700336-11700401,11700081-11700252,11699780-11699994	AT2G27350.2  CDS  gene_syn F12K2.7, F12K2_7  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function cysteine-type peptidase activity|GO:0008234||ISS  product OTU-like cysteine protease family protein  note OTU-like cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: SEC-C motif-containing protein / OTU-like cysteine protease family protein (TAIR:AT5G67170.2); Has 1998 Blast hits to 1133 proteins in 160 species: Archae - 0; Bacteria - 20; Metazoa - 691; Fungi - 183; Plants - 192; Viruses - 12; Other Eukaryotes - 900 (source: NCBI BLink).  protein_id AT2G27350.2p  transcript_id AT2G27350.2  protein_id AT2G27350.2p  transcript_id AT2G27350.2  
At2g27350	chr2:011701764	0.0	C/11701764-11702363,11701523-11701684,11700930-11701007,11700765-11700843,11700529-11700674,11700336-11700401,11700081-11700252,11699780-11699997	AT2G27350.3  CDS  gene_syn F12K2.7, F12K2_7  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function cysteine-type peptidase activity|GO:0008234||ISS  product OTU-like cysteine protease family protein  note OTU-like cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: SEC-C motif-containing protein / OTU-like cysteine protease family protein (TAIR:AT5G67170.2); Has 1538 Blast hits to 1134 proteins in 160 species: Archae - 0; Bacteria - 18; Metazoa - 694; Fungi - 186; Plants - 192; Viruses - 12; Other Eukaryotes - 436 (source: NCBI BLink).  protein_id AT2G27350.3p  transcript_id AT2G27350.3  protein_id AT2G27350.3p  transcript_id AT2G27350.3  
At2g27350	chr2:011701764	0.0	C/11701764-11702363,11701523-11701684,11700930-11701007,11700765-11700843,11700529-11700674,11700336-11700401,11700081-11700252,11699780-11699997	AT2G27350.4  CDS  gene_syn F12K2.7, F12K2_7  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function cysteine-type peptidase activity|GO:0008234||ISS  product OTU-like cysteine protease family protein  note OTU-like cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: SEC-C motif-containing protein / OTU-like cysteine protease family protein (TAIR:AT5G67170.2); Has 1538 Blast hits to 1134 proteins in 160 species: Archae - 0; Bacteria - 18; Metazoa - 694; Fungi - 186; Plants - 192; Viruses - 12; Other Eukaryotes - 436 (source: NCBI BLink).  protein_id AT2G27350.4p  transcript_id AT2G27350.4  protein_id AT2G27350.4p  transcript_id AT2G27350.4  
At2g27350	chr2:011701764	0.0	C/11701764-11702363,11701523-11701684,11700930-11701007,11700765-11700843,11700529-11700674,11700336-11700401,11700081-11700252,11699780-11699997	AT2G27350.5  CDS  gene_syn F12K2.7, F12K2_7  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function cysteine-type peptidase activity|GO:0008234||ISS  product OTU-like cysteine protease family protein  note OTU-like cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: SEC-C motif-containing protein / OTU-like cysteine protease family protein (TAIR:AT5G67170.2); Has 1538 Blast hits to 1134 proteins in 160 species: Archae - 0; Bacteria - 18; Metazoa - 694; Fungi - 186; Plants - 192; Viruses - 12; Other Eukaryotes - 436 (source: NCBI BLink).  protein_id AT2G27350.5p  transcript_id AT2G27350.5  protein_id AT2G27350.5p  transcript_id AT2G27350.5  
At2g27360	chr2:011706233	0.0	W/11706233-11706491,11706712-11706930,11707029-11707177,11707272-11707548,11707625-11707905	AT2G27360.1  CDS  gene_syn F12K2.6, F12K2_6  go_component endomembrane system|GO:0012505||IEA  go_process glycerol biosynthetic process|GO:0006114||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product lipase, putative  note lipase, putative; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: glycerol biosynthetic process, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase, putative (TAIR:AT1G28610.2); Has 1872 Blast hits to 1840 proteins in 172 species: Archae - 0; Bacteria - 276; Metazoa - 1; Fungi - 2; Plants - 1582; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT2G27360.1p  transcript_id AT2G27360.1  protein_id AT2G27360.1p  transcript_id AT2G27360.1  
At2g27370	chr2:011709583	0.0	C/11709583-11709905,11709113-11709236,11708628-11708846	AT2G27370.1  CDS  gene_syn F12K2.5, F12K2_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane family protein  note integral membrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT5G06200.1); Has 259 Blast hits to 259 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 259; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G27370.1p  transcript_id AT2G27370.1  protein_id AT2G27370.1p  transcript_id AT2G27370.1  
At2g27375	chr2:011710674	0.0	W/11710674-11711324	AT2G27375.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G09490.1); similar to hypothetical protein 23.t00046 [Brassica oleracea] (GB:ABD65629.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)  
At2g27380	chr2:011713411	0.0	W/11713411-11715696	AT2G27380.1  CDS  gene_syn ARABIDOPSIS THALIANA EXTENSIN PROLINE-RICH 1, ATEPR1, F12K2.4, F12K2_4  gene ATEPR1  function Encodes an extensin like gene involved in seed germination.  go_component endomembrane system|GO:0012505||IEA  go_process plant-type cell wall modification|GO:0009827|10972890|TAS  go_process seed germination|GO:0009845|10972890|TAS  go_function structural constituent of cell wall|GO:0005199|10972890|TAS  product ATEPR1; structural constituent of cell wall  note ATEPR1; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall modification, seed germination; LOCATED IN: endomembrane system; EXPRESSED IN: micropylar endosperm; CONTAINS InterPro DOMAIN/s: Extensin-like protein (InterPro:IPR003883); Has 590849 Blast hits to 61250 proteins in 1990 species: Archae - 2468; Bacteria - 124411; Metazoa - 218765; Fungi - 67874; Plants - 74158; Viruses - 17374; Other Eukaryotes - 85799 (source: NCBI BLink).  protein_id AT2G27380.1p  transcript_id AT2G27380.1  protein_id AT2G27380.1p  transcript_id AT2G27380.1  
At2g27385	chr2:011717153	0.0	C/11717153-11717318,11716697-11717052	AT2G27385.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22430.1); Has 15 Blast hits to 15 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G27385.1p  transcript_id AT2G27385.1  protein_id AT2G27385.1p  transcript_id AT2G27385.1  
At2g27390	chr2:011720484	0.0	C/11720484-11720888	AT2G27390.1  CDS  gene_syn F12K2.3, F12K2_3  go_function structural constituent of cell wall|GO:0005199||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product proline-rich family protein  note proline-rich family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, root; CONTAINS InterPro DOMAIN/s: Pistil-specific extensin-like protein (InterPro:IPR003882); Has 74884 Blast hits to 29347 proteins in 1372 species: Archae - 176; Bacteria - 11867; Metazoa - 29103; Fungi - 6615; Plants - 13247; Viruses - 2973; Other Eukaryotes - 10903 (source: NCBI BLink).  protein_id AT2G27390.1p  transcript_id AT2G27390.1  protein_id AT2G27390.1p  transcript_id AT2G27390.1  
At2g27395	chr2:011721051	0.0	C/11721051-11721324	AT2G27395.1  pseudogenic_transcript  pseudo  function pseudogene of cysteine protease-related  
At2g27400	chr2:011721539	0.0	C/11721539-11722468	AT2G27400.1  ncRNA  gene_syn TAS1A, TRANS-ACTING SIRNA 1A  gene TAS1A  function Trans-acting siRNA1a primary transcript (TAS1a). Regulated by miR173.  go_component cellular_component|GO:0005575||ND  go_process RNA interference|GO:0016246|15851028|IDA  go_function molecular_function|GO:0003674||ND  product TAS1A (TRANS-ACTING SIRNA 1A); other RNA  transcript_id AT2G27400.1  
At2g27402	chr2:011724031	0.0	W/11724031-11724189	AT2G27402.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: PTAC18 (PLASTID TRANSCRIPTIONALLY ACTIVE 18) (TAIR:AT2G32180.1); Has 15 Blast hits to 15 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G27402.1p  transcript_id AT2G27402.1  protein_id AT2G27402.1p  transcript_id AT2G27402.1  
At2g27410	chr2:011725347	0.0	C/11725347-11725685,11724646-11725236	AT2G27410.1  CDS  gene_syn F12K2.1, F12K2_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32645.1); Has 57 Blast hits to 57 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G27410.1p  transcript_id AT2G27410.1  protein_id AT2G27410.1p  transcript_id AT2G27410.1  
At2g27420	chr2:011727072	0.0	C/11727072-11727519,11726311-11726909	AT2G27420.1  CDS  gene_syn F10A12.10, F10A12_10  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product cysteine proteinase, putative  note cysteine proteinase, putative; FUNCTIONS IN: cysteine-type peptidase activity, cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: cysteine proteinase, putative (TAIR:AT3G49340.1); Has 6218 Blast hits to 6164 proteins in 596 species: Archae - 39; Bacteria - 123; Metazoa - 2858; Fungi - 4; Plants - 1232; Viruses - 122; Other Eukaryotes - 1840 (source: NCBI BLink).  protein_id AT2G27420.1p  transcript_id AT2G27420.1  protein_id AT2G27420.1p  transcript_id AT2G27420.1  
At2g27430	chr2:011732716	0.0	C/11732716-11733170,11729914-11730775	AT2G27430.1  CDS  gene_syn F10A12.11, F10A12_11  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein (TAIR:AT4G31890.1); Has 303 Blast hits to 301 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 4; Plants - 288; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G27430.1p  transcript_id AT2G27430.1  protein_id AT2G27430.1p  transcript_id AT2G27430.1  
At2g27440	chr2:011734803	0.0	W/11734803-11737335	AT2G27440.1  pseudogenic_transcript  pseudo  gene_syn F10A12.12, F10A12_12  function pseudogene of rac GTPase activating protein  
At2g27450	chr2:011739402	0.0	C/11739402-11739577,11739217-11739265,11739018-11739109,11738764-11738915,11738641-11738687,11738519-11738552,11738263-11738429,11737947-11738043,11737666-11737832	AT2G27450.2  CDS  gene_syn ATNLP1, CPA, F10A12.13, F10A12_13, N-CARBAMOYLPUTRESCINE AMIDOHYDROLASE, NITRILASE-LIKE PROTEIN 1, NLP1  gene NLP1  function Encodes N-carbamoylputrescine amidohydrolase that is involved in putrescine and polyamine biosynthesis.  go_process nitrogen compound metabolic process|GO:0006807||ISS  go_process putrescine biosynthetic process|GO:0009446|12435743|TAS  go_function hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds|GO:0016810||ISS  go_function N-carbamoylputrescine amidase activity|GO:0050126|12435743|IDA  product NLP1 (NITRILASE-LIKE PROTEIN 1); N-carbamoylputrescine amidase/ hydrolase, acting on carbon-nitrogen (but not peptide) bonds  note NITRILASE-LIKE PROTEIN 1 (NLP1); FUNCTIONS IN: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, N-carbamoylputrescine amidase activity; INVOLVED IN: nitrogen compound metabolic process, putrescine biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (InterPro:IPR003010), N-carbamoylputrescine amidase (InterPro:IPR017755); BEST Arabidopsis thaliana protein match is: BETA-UP (beta-ureidopropionase); beta-ureidopropionase (TAIR:AT5G64370.1); Has 7715 Blast hits to 7679 proteins in 1255 species: Archae - 133; Bacteria - 4552; Metazoa - 382; Fungi - 272; Plants - 187; Viruses - 11; Other Eukaryotes - 2178 (source: NCBI BLink).  protein_id AT2G27450.2p  transcript_id AT2G27450.2  protein_id AT2G27450.2p  transcript_id AT2G27450.2  
At2g27450	chr2:011739483	0.0	C/11739483-11739577,11739217-11739265,11739018-11739109,11738764-11738915,11738641-11738687,11738519-11738552,11738263-11738429,11737947-11738043,11737666-11737832	AT2G27450.1  CDS  gene_syn ATNLP1, CPA, F10A12.13, F10A12_13, N-CARBAMOYLPUTRESCINE AMIDOHYDROLASE, NITRILASE-LIKE PROTEIN 1, NLP1  gene NLP1  function Encodes N-carbamoylputrescine amidohydrolase that is involved in putrescine and polyamine biosynthesis.  go_process nitrogen compound metabolic process|GO:0006807||ISS  go_process putrescine biosynthetic process|GO:0009446|12435743|TAS  go_function hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds|GO:0016810||ISS  go_function N-carbamoylputrescine amidase activity|GO:0050126|12435743|IDA  product NLP1 (NITRILASE-LIKE PROTEIN 1); N-carbamoylputrescine amidase/ hydrolase, acting on carbon-nitrogen (but not peptide) bonds  note NITRILASE-LIKE PROTEIN 1 (NLP1); FUNCTIONS IN: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, N-carbamoylputrescine amidase activity; INVOLVED IN: nitrogen compound metabolic process, putrescine biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (InterPro:IPR003010), N-carbamoylputrescine amidase (InterPro:IPR017755); BEST Arabidopsis thaliana protein match is: BETA-UP (beta-ureidopropionase); beta-ureidopropionase (TAIR:AT5G64370.1); Has 7967 Blast hits to 7931 proteins in 1262 species: Archae - 139; Bacteria - 4685; Metazoa - 389; Fungi - 296; Plants - 188; Viruses - 11; Other Eukaryotes - 2259 (source: NCBI BLink).  protein_id AT2G27450.1p  transcript_id AT2G27450.1  protein_id AT2G27450.1p  transcript_id AT2G27450.1  
At2g27460	chr2:011740670	0.0	W/11740670-11740997,11741085-11741150,11741451-11741504,11741600-11741772,11741898-11742084,11742180-11742325,11742402-11742556,11742671-11742752,11742845-11742960,11743265-11743363,11743656-11743779,11743881-11744161,11744357-11744571,11744656-11744867	AT2G27460.1  CDS  gene_syn F10A12.14, F10A12_14  go_component COPII vesicle coat|GO:0030127||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process ER to Golgi vesicle-mediated transport|GO:0006888||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process vesicle-mediated transport|GO:0016192||ISS  go_function transporter activity|GO:0005215||ISS  product sec23/sec24 transport family protein  note sec23/sec24 transport family protein; FUNCTIONS IN: protein binding, transporter activity, zinc ion binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24 helical region (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24 trunk region (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: protein transport protein Sec24, putative (TAIR:AT3G07100.1); Has 1198 Blast hits to 1186 proteins in 173 species: Archae - 0; Bacteria - 2; Metazoa - 467; Fungi - 381; Plants - 154; Viruses - 0; Other Eukaryotes - 194 (source: NCBI BLink).  protein_id AT2G27460.1p  transcript_id AT2G27460.1  protein_id AT2G27460.1p  transcript_id AT2G27460.1  
At2g27470	chr2:011746206	0.0	C/11746206-11746375,11745908-11746026,11745196-11745734	AT2G27470.1  CDS  gene_syn F10A12.15, F10A12_15, NF-YB11, NUCLEAR FACTOR Y, SUBUNIT B11  gene NF-YB11  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YB11 (NUCLEAR FACTOR Y, SUBUNIT B11); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT B11 (NF-YB11); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2); transcription factor (TAIR:AT5G47640.1); Has 137490 Blast hits to 50247 proteins in 1722 species: Archae - 396; Bacteria - 10430; Metazoa - 40344; Fungi - 13868; Plants - 5267; Viruses - 1743; Other Eukaryotes - 65442 (source: NCBI BLink).  protein_id AT2G27470.1p  transcript_id AT2G27470.1  protein_id AT2G27470.1p  transcript_id AT2G27470.1  
At2g27480	chr2:011746811	0.0	W/11746811-11747144,11747238-11747284,11747393-11747568,11747659-11747677,11747775-11747885	AT2G27480.1  CDS  gene_syn F10A12.16, F10A12_16  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium ion binding  note calcium ion binding; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT5G04170.1); Has 1279 Blast hits to 1277 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 1048; Fungi - 88; Plants - 73; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT2G27480.1p  transcript_id AT2G27480.1  protein_id AT2G27480.1p  transcript_id AT2G27480.1  
At2g27490	chr2:011748902	0.0	C/11748902-11749009,11748608-11748753,11748087-11748531	AT2G27490.1  CDS  gene_syn ATCOAE, F10A12.17, F10A12_17  gene ATCOAE  function AT2G27490 encodes dephospho-CoA kinase. The molecular function was shown to phosphorylate the ribosyl moiety forming CoA.  go_component vacuole|GO:0005773|14760709|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process coenzyme A biosynthetic process|GO:0015937|12860978|IDA  go_process coenzyme A biosynthetic process|GO:0015937||ISS  go_function dephospho-CoA kinase activity|GO:0004140|12860978|IDA  go_function dephospho-CoA kinase activity|GO:0004140||ISS  go_function ATP binding|GO:0005524||ISS  product ATCOAE; ATP binding / dephospho-CoA kinase  note ATCOAE; FUNCTIONS IN: dephospho-CoA kinase activity, ATP binding; INVOLVED IN: coenzyme A biosynthetic process; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dephospho-CoA kinase (InterPro:IPR001977); Has 4818 Blast hits to 4817 proteins in 1452 species: Archae - 0; Bacteria - 2557; Metazoa - 224; Fungi - 88; Plants - 22; Viruses - 0; Other Eukaryotes - 1927 (source: NCBI BLink).  protein_id AT2G27490.1p  transcript_id AT2G27490.1  protein_id AT2G27490.1p  transcript_id AT2G27490.1  
At2g27490	chr2:011748902	0.0	C/11748902-11749009,11748608-11748753,11748087-11748531	AT2G27490.2  CDS  gene_syn ATCOAE, F10A12.17, F10A12_17  gene ATCOAE  function AT2G27490 encodes dephospho-CoA kinase. The molecular function was shown to phosphorylate the ribosyl moiety forming CoA.  go_component vacuole|GO:0005773|14760709|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process coenzyme A biosynthetic process|GO:0015937|12860978|IDA  go_process coenzyme A biosynthetic process|GO:0015937||ISS  go_function dephospho-CoA kinase activity|GO:0004140|12860978|IDA  go_function dephospho-CoA kinase activity|GO:0004140||ISS  go_function ATP binding|GO:0005524||ISS  product ATCOAE; ATP binding / dephospho-CoA kinase  note ATCOAE; FUNCTIONS IN: dephospho-CoA kinase activity, ATP binding; INVOLVED IN: coenzyme A biosynthetic process; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dephospho-CoA kinase (InterPro:IPR001977); Has 4818 Blast hits to 4817 proteins in 1452 species: Archae - 0; Bacteria - 2557; Metazoa - 224; Fungi - 88; Plants - 22; Viruses - 0; Other Eukaryotes - 1927 (source: NCBI BLink).  protein_id AT2G27490.2p  transcript_id AT2G27490.2  protein_id AT2G27490.2p  transcript_id AT2G27490.2  
At2g27500	chr2:011752654	0.0	C/11752654-11753514,11752364-11752447	AT2G27500.3  CDS  gene_syn F10A12.18, F10A12_18  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT1G32860.1); Has 1378 Blast hits to 1371 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 9; Plants - 1366; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G27500.3p  transcript_id AT2G27500.3  protein_id AT2G27500.3p  transcript_id AT2G27500.3  
At2g27500	chr2:011753781	0.0	C/11753781-11753844,11752615-11753684	AT2G27500.2  CDS  gene_syn F10A12.18, F10A12_18  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT1G32860.1); Has 1391 Blast hits to 1379 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 9; Plants - 1379; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G27500.2p  transcript_id AT2G27500.2  protein_id AT2G27500.2p  transcript_id AT2G27500.2  
At2g27500	chr2:011753781	0.0	C/11753781-11753844,11752654-11753684,11752364-11752447	AT2G27500.1  CDS  gene_syn F10A12.18, F10A12_18  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT1G32860.1); Has 1391 Blast hits to 1379 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 9; Plants - 1379; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G27500.1p  transcript_id AT2G27500.1  protein_id AT2G27500.1p  transcript_id AT2G27500.1  
At2g27505	chr2:011756746	0.0	W/11756746-11756903,11757018-11757387,11757509-11757829	AT2G27505.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G44950.1); Has 447 Blast hits to 361 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 447; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G27505.1p  transcript_id AT2G27505.1  protein_id AT2G27505.1p  transcript_id AT2G27505.1  
At2g27510	chr2:011758281	0.0	C/11758281-11758748	AT2G27510.1  CDS  gene_syn ATFD3, F10A12.19, F10A12_19, ferredoxin 3  gene ATFD3  go_component chloroplast|GO:0009507||IEA  go_process electron transport chain|GO:0022900||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function iron-sulfur cluster binding|GO:0051536||IEA  go_function 2 iron, 2 sulfur cluster binding|GO:0051537||IEA  go_function electron carrier activity|GO:0009055||ISS  product ATFD3 (ferredoxin 3); 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding  note ferredoxin 3 (ATFD3); FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding; INVOLVED IN: electron transport chain; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), Ferredoxin (InterPro:IPR001041), Ferredoxin [2Fe-2S], plant (InterPro:IPR010241), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: ATFD1 (FERREDOXIN 1); 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding (TAIR:AT1G10960.1); Has 5266 Blast hits to 5264 proteins in 895 species: Archae - 65; Bacteria - 3574; Metazoa - 8; Fungi - 7; Plants - 446; Viruses - 2; Other Eukaryotes - 1164 (source: NCBI BLink).  protein_id AT2G27510.1p  transcript_id AT2G27510.1  protein_id AT2G27510.1p  transcript_id AT2G27510.1  
At2g27520	chr2:011762061	0.0	W/11762061-11763104	AT2G27520.1  CDS  gene_syn F10A12.29  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G17490.1); Has 1257 Blast hits to 1233 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1255; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G27520.1p  transcript_id AT2G27520.1  protein_id AT2G27520.1p  transcript_id AT2G27520.1  
At2g27530	chr2:011764566	0.0	C/11764566-11764570,11764149-11764368,11763898-11764063,11763586-11763791,11763443-11763496	AT2G27530.1  CDS  gene_syn F10A12.22, PGY1, PIGGYBACK1  gene PGY1  function Encodes ribosomal protein L10aP. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2.  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_function RNA binding|GO:0003723||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process adaxial/abaxial pattern formation|GO:0009955|18305008|IGI  go_process post-embryonic organ development|GO:0048569|18305008|IGI  go_function structural constituent of ribosome|GO:0003735||ISS  product PGY1 (PIGGYBACK1); RNA binding / structural constituent of ribosome  note PIGGYBACK1 (PGY1); FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: post-embryonic organ development, adaxial/abaxial pattern formation, translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro:IPR016094); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L10A (RPL10aA) (TAIR:AT1G08360.1); Has 2473 Blast hits to 2473 proteins in 759 species: Archae - 186; Bacteria - 978; Metazoa - 349; Fungi - 122; Plants - 236; Viruses - 0; Other Eukaryotes - 602 (source: NCBI BLink).  protein_id AT2G27530.1p  transcript_id AT2G27530.1  protein_id AT2G27530.1p  transcript_id AT2G27530.1  
At2g27530	chr2:011764566	0.0	C/11764566-11764570,11764149-11764368,11763898-11764063,11763586-11763791,11763443-11763496	AT2G27530.2  CDS  gene_syn F10A12.22, PGY1, PIGGYBACK1  gene PGY1  function Encodes ribosomal protein L10aP. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2.  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_function RNA binding|GO:0003723||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process adaxial/abaxial pattern formation|GO:0009955|18305008|IGI  go_process post-embryonic organ development|GO:0048569|18305008|IGI  go_function structural constituent of ribosome|GO:0003735||ISS  product PGY1 (PIGGYBACK1); RNA binding / structural constituent of ribosome  note PIGGYBACK1 (PGY1); FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: post-embryonic organ development, adaxial/abaxial pattern formation, translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro:IPR016094); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L10A (RPL10aA) (TAIR:AT1G08360.1); Has 2473 Blast hits to 2473 proteins in 759 species: Archae - 186; Bacteria - 978; Metazoa - 349; Fungi - 122; Plants - 236; Viruses - 0; Other Eukaryotes - 602 (source: NCBI BLink).  protein_id AT2G27530.2p  transcript_id AT2G27530.2  protein_id AT2G27530.2p  transcript_id AT2G27530.2  
At2g27535	chr2:011765933	0.0	C/11765933-11765937,11765738-11765815,11765418-11765580	AT2G27535.1  CDS  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L10A family protein  note ribosomal protein L10A family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, ribosome; Has 16 Blast hits to 16 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G27535.1p  transcript_id AT2G27535.1  protein_id AT2G27535.1p  transcript_id AT2G27535.1  
At2g27540	chr2:011768974	0.0	W/11768974-11769081	AT2G27540.1  CDS  gene_syn F10A12.23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52080.1); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G27540.1p  transcript_id AT2G27540.1  protein_id AT2G27540.1p  transcript_id AT2G27540.1  
At2g27550	chr2:011773417	0.0	W/11773417-11773620,11773974-11774035,11774154-11774194,11774289-11774509	AT2G27550.1  CDS  gene_syn ARABIDOPSIS THALIANA CENTRORADIALIS, ATC, F10A12.20  gene ATC  function encodes a protein similar to TFL1. overexpression leads to similar phenotype as TFL1 overexpression. expressed specifically in the hypocotyl and null mutation does not result in phenotypes exhibited by TFL1 null mutations.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function phosphatidylethanolamine binding|GO:0008429||ISS  product ATC (ARABIDOPSIS THALIANA CENTRORADIALIS); phosphatidylethanolamine binding  note ARABIDOPSIS THALIANA CENTRORADIALIS (ATC); FUNCTIONS IN: phosphatidylethanolamine binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Phosphatidylethanolamine-binding, conserved site (InterPro:IPR001858), Phosphatidylethanolamine-binding protein PEBP (InterPro:IPR008914); BEST Arabidopsis thaliana protein match is: TFL1 (TERMINAL FLOWER 1); phosphatidylethanolamine binding (TAIR:AT5G03840.1); Has 1302 Blast hits to 1302 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 547; Fungi - 71; Plants - 654; Viruses - 3; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT2G27550.1p  transcript_id AT2G27550.1  protein_id AT2G27550.1p  transcript_id AT2G27550.1  
At2g27560	chr2:011774852	0.0	C/11774852-11774923	AT2G27560.1  tRNA  gene_syn 42596.TRNA-LYS-1, 49200.TRNA-LYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Lys (anticodon: TTT)  transcript_id AT2G27560.1  
At2g27570	chr2:011775329	0.0	W/11775329-11775658,11775716-11775832,11775887-11776095,11776140-11776305	AT2G27570.1  CDS  gene_syn F10A12.24, F10A12_24  go_function sulfotransferase activity|GO:0008146||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function sulfotransferase activity|GO:0008146||ISS  product sulfotransferase family protein  note sulfotransferase family protein; FUNCTIONS IN: sulfotransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Sulfotransferase (InterPro:IPR000863); BEST Arabidopsis thaliana protein match is: sulfotransferase family protein (TAIR:AT3G45080.1); Has 1870 Blast hits to 1839 proteins in 126 species: Archae - 0; Bacteria - 89; Metazoa - 1416; Fungi - 1; Plants - 305; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT2G27570.1p  transcript_id AT2G27570.1  protein_id AT2G27570.1p  transcript_id AT2G27570.1  
At2g27580	chr2:011776640	0.0	C/11776640-11777131	AT2G27580.1  CDS  gene_syn F10A12.25, F10A12_25  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product zinc finger (AN1-like) family protein  note zinc finger (AN1-like) family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: zinc finger (AN1-like) family protein (TAIR:AT3G52800.1); Has 764 Blast hits to 761 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 387; Fungi - 2; Plants - 272; Viruses - 6; Other Eukaryotes - 97 (source: NCBI BLink).  protein_id AT2G27580.1p  transcript_id AT2G27580.1  protein_id AT2G27580.1p  transcript_id AT2G27580.1  
At2g27590	chr2:011779568	0.0	C/11779568-11779777,11779221-11779327,11778652-11779132,11778425-11778543,11777768-11777969	AT2G27590.1  CDS  gene_syn F10A12.26, F10A12_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; Has 78 Blast hits to 78 proteins in 13 species: Archae - 0; Bacteria - 16; Metazoa - 0; Fungi - 2; Plants - 12; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT2G27590.1p  transcript_id AT2G27590.1  protein_id AT2G27590.1p  transcript_id AT2G27590.1  
At2g27600	chr2:011781226	0.0	W/11781226-11781703,11781798-11781903,11782518-11782716,11782800-11782868,11782948-11783022,11783113-11783211,11783314-11783469,11783605-11783730	AT2G27600.1  CDS  gene_syn F10A12.27, F10A12_27, SKD1, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, VACUOLAR PROTEIN SORTING 4, VPS4  gene SKD1  function Encodes a SKD1 (Suppressor of K+ Transport Growth Defect1) homolog. Localized to the cytoplasm and to multivesicular endosomes. Involved in multivesicular endosome function.  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component cytoplasm|GO:0005737|17468262|IDA  go_component multivesicular body|GO:0005771|17468262|IDA  go_process endosome organization|GO:0007032|17468262|IMP  go_process vesicle-mediated transport|GO:0016192|17468262|IMP  go_function ATP binding|GO:0005524||ISS  product SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1); ATP binding / nucleoside-triphosphatase/ nucleotide binding  note SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1 (SKD1); FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: vesicle-mediated transport, endosome organization; LOCATED IN: multivesicular body, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Vps4 oligomerisation, C-terminal (InterPro:IPR015415), MIT (InterPro:IPR007330); BEST Arabidopsis thaliana protein match is: ERH3 (ECTOPIC ROOT HAIR 3); ATP binding / nucleoside-triphosphatase/ nucleotide binding (TAIR:AT1G80350.1); Has 21096 Blast hits to 19401 proteins in 1744 species: Archae - 862; Bacteria - 5994; Metazoa - 4283; Fungi - 2297; Plants - 1491; Viruses - 18; Other Eukaryotes - 6151 (source: NCBI BLink).  protein_id AT2G27600.1p  transcript_id AT2G27600.1  protein_id AT2G27600.1p  transcript_id AT2G27600.1  
At2g27610	chr2:011783927	0.0	C/11783927-11786533	AT2G27610.1  CDS  gene_syn F15K20.29, F15K20_29  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G13650.1); Has 19079 Blast hits to 5518 proteins in 198 species: Archae - 2; Bacteria - 20; Metazoa - 154; Fungi - 169; Plants - 18325; Viruses - 0; Other Eukaryotes - 409 (source: NCBI BLink).  protein_id AT2G27610.1p  transcript_id AT2G27610.1  protein_id AT2G27610.1p  transcript_id AT2G27610.1  
At2g27630	chr2:011790061	0.0	C/11790061-11792010,11789854-11789982,11789643-11789765,11789510-11789556,11789284-11789426,11789119-11789222,11788827-11789015,11788517-11788723,11788280-11788427,11788050-11788180,11787868-11787960,11787669-11787773	AT2G27630.1  CDS  gene_syn F15K20.27, F15K20_27  go_component intracellular|GO:0005622||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_function zinc ion binding|GO:0008270||IEA  product ubiquitin carboxyl-terminal hydrolase-related  note ubiquitin carboxyl-terminal hydrolase-related; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: ubiquitin carboxyl-terminal hydrolase-related (TAIR:AT2G27650.1); Has 138 Blast hits to 123 proteins in 20 species: Archae - 0; Bacteria - 6; Metazoa - 4; Fungi - 4; Plants - 112; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT2G27630.1p  transcript_id AT2G27630.1  protein_id AT2G27630.1p  transcript_id AT2G27630.1  
At2g27650	chr2:011795382	0.0	C/11795382-11797343,11795174-11795302,11794942-11795073,11794813-11794859,11794639-11794715,11794438-11794541,11794128-11794325,11793826-11794032,11793591-11793738,11793366-11793496,11793186-11793275,11792996-11793091	AT2G27650.1  CDS  gene_syn F15K20.25, F15K20_25  go_component intracellular|GO:0005622||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_function zinc ion binding|GO:0008270||IEA  product ubiquitin carboxyl-terminal hydrolase-related  note ubiquitin carboxyl-terminal hydrolase-related; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: ubiquitin carboxyl-terminal hydrolase-related (TAIR:AT2G27630.1); Has 142 Blast hits to 132 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 2; Plants - 105; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT2G27650.1p  transcript_id AT2G27650.1  protein_id AT2G27650.1p  transcript_id AT2G27650.1  
At2g27660	chr2:011798694	0.0	C/11798694-11800850	AT2G27660.1  CDS  gene_syn F15K20.24, F15K20_24  go_component chloroplast|GO:0009507||IEA  go_function zinc ion binding|GO:0008270||IEA  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, ZZ-type (InterPro:IPR000433), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT2G44400.1); Has 11098 Blast hits to 3624 proteins in 342 species: Archae - 16; Bacteria - 7150; Metazoa - 1048; Fungi - 449; Plants - 1847; Viruses - 23; Other Eukaryotes - 565 (source: NCBI BLink).  protein_id AT2G27660.1p  transcript_id AT2G27660.1  protein_id AT2G27660.1p  transcript_id AT2G27660.1  
At2g27670	chr2:011802832	0.0	C/11802832-11802891,11802608-11802748,11802480-11802554,11802214-11802354,11801979-11802122,11801568-11801888	AT2G27670.1  CDS  gene_syn F15K20.23, F15K20_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23640.1); Has 88 Blast hits to 76 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G27670.1p  transcript_id AT2G27670.1  protein_id AT2G27670.1p  transcript_id AT2G27670.1  
At2g27680	chr2:011805665	0.0	C/11805665-11805965,11805377-11805461,11805176-11805292,11805028-11805092,11804845-11804933,11804665-11804744,11804472-11804583,11804251-11804370,11803981-11804166	AT2G27680.1  CDS  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process oxidation reduction|GO:0055114||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function aldo-keto reductase activity|GO:0004033||ISS  product aldo/keto reductase family protein  note aldo/keto reductase family protein; FUNCTIONS IN: oxidoreductase activity, aldo-keto reductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395); BEST Arabidopsis thaliana protein match is: aldo/keto reductase family protein (TAIR:AT1G06690.1); Has 7113 Blast hits to 7107 proteins in 1067 species: Archae - 127; Bacteria - 5110; Metazoa - 109; Fungi - 309; Plants - 217; Viruses - 0; Other Eukaryotes - 1241 (source: NCBI BLink).  protein_id AT2G27680.1p  transcript_id AT2G27680.1  protein_id AT2G27680.1p  transcript_id AT2G27680.1  
At2g27690	chr2:011809373	0.0	W/11809373-11810860	AT2G27690.1  CDS  gene_syn CYP94C1, CYTOCHROME P450, FAMILY 94, SUBFAMILY C, POLYPEPTIDE 1, F15K20.21, F15K20_21  gene CYP94C1  function Encodes a CYP94C1. Has highest omega-hydroxylase activity with 9,10-epoxystearic acid, while also metabolized lauric acid (C12:0) and C18 unsaturated fatty acids. Gene expression is induced in response to wounding and jasmonic acid treatment.  go_component microsome|GO:0005792|17868380|IDA  go_process response to wounding|GO:0009611|17868380|IEP  go_process response to jasmonic acid stimulus|GO:0009753|17868380|IEP  go_function fatty acid (omega-1)-hydroxylase activity|GO:0008393|17868380|IDA  go_function oxygen binding|GO:0019825||ISS  product CYP94C1; fatty acid (omega-1)-hydroxylase/ oxygen binding  note CYP94C1; FUNCTIONS IN: fatty acid (omega-1)-hydroxylase activity, oxygen binding; INVOLVED IN: response to jasmonic acid stimulus, response to wounding; LOCATED IN: microsome; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP94B3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G48520.1); Has 20362 Blast hits to 20308 proteins in 1065 species: Archae - 21; Bacteria - 1529; Metazoa - 9605; Fungi - 3910; Plants - 4572; Viruses - 3; Other Eukaryotes - 722 (source: NCBI BLink).  protein_id AT2G27690.1p  transcript_id AT2G27690.1  protein_id AT2G27690.1p  transcript_id AT2G27690.1  
At2g27700	chr2:011815526	0.0	C/11815526-11816002,11815341-11815448,11815158-11815258,11814988-11815081,11814788-11814898,11814629-11814694,11814471-11814530,11813949-11814371	AT2G27700.1  CDS  gene_syn F15K20.20, F15K20_20  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_function translation factor activity, nucleic acid binding|GO:0008135||ISS  product eukaryotic translation initiation factor 2 family protein / eIF-2 family protein  note eukaryotic translation initiation factor 2 family protein / eIF-2 family protein; FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, GTPase activity; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation initiation factor 2 related (InterPro:IPR015760), Protein synthesis factor, GTP-binding (InterPro:IPR000795); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 2 family protein / eIF-2 family protein (TAIR:AT1G76810.1); Has 24808 Blast hits to 24804 proteins in 2115 species: Archae - 368; Bacteria - 15349; Metazoa - 657; Fungi - 478; Plants - 301; Viruses - 0; Other Eukaryotes - 7655 (source: NCBI BLink).  protein_id AT2G27700.1p  transcript_id AT2G27700.1  protein_id AT2G27700.1p  transcript_id AT2G27700.1  
At2g27700	chr2:011815526	0.0	C/11815526-11816002,11815341-11815448,11815158-11815258,11814988-11815081,11814788-11814901,11814629-11814694,11814471-11814530,11813949-11814371	AT2G27700.2  CDS  gene_syn F15K20.20, F15K20_20  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_function translation factor activity, nucleic acid binding|GO:0008135||ISS  product eukaryotic translation initiation factor 2 family protein / eIF-2 family protein  note eukaryotic translation initiation factor 2 family protein / eIF-2 family protein; FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, GTPase activity; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation initiation factor 2 related (InterPro:IPR015760), Protein synthesis factor, GTP-binding (InterPro:IPR000795); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 2 family protein / eIF-2 family protein (TAIR:AT1G76810.1); Has 24938 Blast hits to 24934 proteins in 2117 species: Archae - 380; Bacteria - 15431; Metazoa - 673; Fungi - 479; Plants - 323; Viruses - 0; Other Eukaryotes - 7652 (source: NCBI BLink).  protein_id AT2G27700.2p  transcript_id AT2G27700.2  protein_id AT2G27700.2p  transcript_id AT2G27700.2  
At2g27710	chr2:011816929	0.0	W/11816929-11817016,11817306-11817538,11817644-11817670	AT2G27710.1  CDS  gene_syn F15K20.19, F15K20_19  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic ribosome|GO:0022626|17934214|IDA  go_process translational elongation|GO:0006414||ISS  go_process response to cold|GO:0009409|16574749|IEP  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S acidic ribosomal protein P2 (RPP2B)  note 60S acidic ribosomal protein P2 (RPP2B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, response to cold; LOCATED IN: in 8 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P2 (RPP2A) (TAIR:AT2G27720.1); Has 1426 Blast hits to 1425 proteins in 280 species: Archae - 29; Bacteria - 1; Metazoa - 531; Fungi - 319; Plants - 304; Viruses - 0; Other Eukaryotes - 242 (source: NCBI BLink).  protein_id AT2G27710.1p  transcript_id AT2G27710.1  protein_id AT2G27710.1p  transcript_id AT2G27710.1  
At2g27710	chr2:011816929	0.0	W/11816929-11817016,11817306-11817538,11817644-11817670	AT2G27710.2  CDS  gene_syn F15K20.19, F15K20_19  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic ribosome|GO:0022626|17934214|IDA  go_process translational elongation|GO:0006414||ISS  go_process response to cold|GO:0009409|16574749|IEP  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S acidic ribosomal protein P2 (RPP2B)  note 60S acidic ribosomal protein P2 (RPP2B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, response to cold; LOCATED IN: in 8 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P2 (RPP2A) (TAIR:AT2G27720.1); Has 1426 Blast hits to 1425 proteins in 280 species: Archae - 29; Bacteria - 1; Metazoa - 531; Fungi - 319; Plants - 304; Viruses - 0; Other Eukaryotes - 242 (source: NCBI BLink).  protein_id AT2G27710.2p  transcript_id AT2G27710.2  protein_id AT2G27710.2p  transcript_id AT2G27710.2  
At2g27710	chr2:011816929	0.0	W/11816929-11817016,11817306-11817538,11817644-11817670	AT2G27710.3  CDS  gene_syn F15K20.19, F15K20_19  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic ribosome|GO:0022626|17934214|IDA  go_process translational elongation|GO:0006414||ISS  go_process response to cold|GO:0009409|16574749|IEP  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S acidic ribosomal protein P2 (RPP2B)  note 60S acidic ribosomal protein P2 (RPP2B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, response to cold; LOCATED IN: in 8 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P2 (RPP2A) (TAIR:AT2G27720.1); Has 1426 Blast hits to 1425 proteins in 280 species: Archae - 29; Bacteria - 1; Metazoa - 531; Fungi - 319; Plants - 304; Viruses - 0; Other Eukaryotes - 242 (source: NCBI BLink).  protein_id AT2G27710.3p  transcript_id AT2G27710.3  protein_id AT2G27710.3p  transcript_id AT2G27710.3  
At2g27720	chr2:011818696	0.0	W/11818696-11818783,11818918-11818953,11819022-11819254,11819344-11819370	AT2G27720.3  CDS  gene_syn F15K20.18, F15K20_18  go_function structural constituent of ribosome|GO:0003735||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component cytosolic ribosome|GO:0022626|17934214|IDA  go_process translational elongation|GO:0006414||ISS  go_process response to cold|GO:0009409|14617066|IEP  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S acidic ribosomal protein P2 (RPP2A)  note 60S acidic ribosomal protein P2 (RPP2A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, response to cold; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P2 (RPP2B) (TAIR:AT2G27710.3).  protein_id AT2G27720.3p  transcript_id AT2G27720.3  protein_id AT2G27720.3p  transcript_id AT2G27720.3  
At2g27720	chr2:011818696	0.0	W/11818696-11818783,11818918-11818962,11819022-11819254,11819344-11819370	AT2G27720.2  CDS  gene_syn F15K20.18, F15K20_18  go_function structural constituent of ribosome|GO:0003735||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component cytosolic ribosome|GO:0022626|17934214|IDA  go_process translational elongation|GO:0006414||ISS  go_process response to cold|GO:0009409|14617066|IEP  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S acidic ribosomal protein P2 (RPP2A)  note 60S acidic ribosomal protein P2 (RPP2A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, response to cold; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P2 (RPP2B) (TAIR:AT2G27710.3).  protein_id AT2G27720.2p  transcript_id AT2G27720.2  protein_id AT2G27720.2p  transcript_id AT2G27720.2  
At2g27720	chr2:011818696	0.0	W/11818696-11818783,11819022-11819254,11819344-11819370	AT2G27720.1  CDS  gene_syn F15K20.18, F15K20_18  go_component nucleus|GO:0005634|14617066|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic ribosome|GO:0022626|17934214|IDA  go_process translational elongation|GO:0006414||ISS  go_process response to cold|GO:0009409|14617066|IEP  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S acidic ribosomal protein P2 (RPP2A)  note 60S acidic ribosomal protein P2 (RPP2A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, response to cold; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P2 (RPP2B) (TAIR:AT2G27710.3); Has 1511 Blast hits to 1510 proteins in 282 species: Archae - 26; Bacteria - 0; Metazoa - 622; Fungi - 323; Plants - 309; Viruses - 0; Other Eukaryotes - 231 (source: NCBI BLink).  protein_id AT2G27720.1p  transcript_id AT2G27720.1  protein_id AT2G27720.1p  transcript_id AT2G27720.1  
At2g27730	chr2:011820769	0.0	C/11820769-11820867,11820365-11820403,11820056-11820259	AT2G27730.1  CDS  gene_syn F15K20.17, F15K20_17  go_component nucleolus|GO:0005730|15496452|IDA  go_component mitochondrion|GO:0005739|15276431|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component mitochondrion|GO:0005739|12837548|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial membrane|GO:0031966|16407270|IDA  go_component respiratory chain complex I|GO:0045271|16407270|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process photorespiration|GO:0009853|16407270|TAS  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, nucleolus, mitochondrial membrane, vacuole, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 46 Blast hits to 46 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G27730.1p  transcript_id AT2G27730.1  protein_id AT2G27730.1p  transcript_id AT2G27730.1  
At2g27740	chr2:011822800	0.0	W/11822800-11823054,11823134-11823244,11823329-11823409,11823498-11823575	AT2G27740.1  CDS  gene_syn F15K20.16, F15K20_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF662 (InterPro:IPR007033); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36410.2); Has 1039 Blast hits to 956 proteins in 159 species: Archae - 25; Bacteria - 81; Metazoa - 471; Fungi - 46; Plants - 86; Viruses - 5; Other Eukaryotes - 325 (source: NCBI BLink).  protein_id AT2G27740.1p  transcript_id AT2G27740.1  protein_id AT2G27740.1p  transcript_id AT2G27740.1  
At2g27750	chr2:011823916	0.0	C/11823916-11824461	AT2G27750.1  CDS  gene_syn F15K20.15, F15K20_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product nucleolar matrix protein-related  note nucleolar matrix protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Surfeit locus 6 (InterPro:IPR007019); BEST Arabidopsis thaliana protein match is: nucleolar matrix protein-related (TAIR:AT5G05210.2); Has 578 Blast hits to 508 proteins in 127 species: Archae - 0; Bacteria - 6; Metazoa - 192; Fungi - 100; Plants - 37; Viruses - 0; Other Eukaryotes - 243 (source: NCBI BLink).  protein_id AT2G27750.1p  transcript_id AT2G27750.1  protein_id AT2G27750.1p  transcript_id AT2G27750.1  
At2g27760	chr2:011824860	0.0	W/11824860-11825079,11825192-11825271,11825595-11825663,11825769-11825841,11825918-11826042,11826171-11826245,11826415-11826807,11826889-11826964,11827073-11827221,11827292-11827432	AT2G27760.1  CDS  gene_syn ATIPT2, IPPT, TRNA ISOPENTENYLTRANSFERASE 2  gene ATIPT2  function Encodes tRNA isopentenyltransferase, similar to yeast MOD5.  go_component cytosol|GO:0005829|14726522|IDA  go_process cytokinin biosynthetic process|GO:0009691|11313355|IDA  go_process cytokinin biosynthetic process|GO:0009691|17062755|IGI  go_function tRNA isopentenyltransferase activity|GO:0004811|11999372|IGI  go_function adenylate dimethylallyltransferase activity|GO:0009824|11313355|IDA  product ATIPT2 (TRNA ISOPENTENYLTRANSFERASE 2); adenylate dimethylallyltransferase/ tRNA isopentenyltransferase  note TRNA ISOPENTENYLTRANSFERASE 2 (ATIPT2); FUNCTIONS IN: adenylate dimethylallyltransferase activity, tRNA isopentenyltransferase activity; INVOLVED IN: cytokinin biosynthetic process; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), tRNA delta(2)-isopentenylpyrophosphate transferase (InterPro:IPR018022), tRNA isopentenyltransferase (InterPro:IPR002627); BEST Arabidopsis thaliana protein match is: IPT5; ATP binding / tRNA isopentenyltransferase/ transferase, transferring alkyl or aryl (other than methyl) groups (TAIR:AT5G19040.1); Has 5466 Blast hits to 5352 proteins in 1470 species: Archae - 0; Bacteria - 2687; Metazoa - 128; Fungi - 89; Plants - 277; Viruses - 0; Other Eukaryotes - 2285 (source: NCBI BLink).  protein_id AT2G27760.1p  transcript_id AT2G27760.1  protein_id AT2G27760.1p  transcript_id AT2G27760.1  
At2g27770	chr2:011833089	0.0	C/11833089-11834051	AT2G27770.1  CDS  gene_syn F15K20.13, F15K20_13  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF868, plant (InterPro:IPR008586); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36470.1); Has 143 Blast hits to 143 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G27770.1p  transcript_id AT2G27770.1  protein_id AT2G27770.1p  transcript_id AT2G27770.1  
At2g27775	chr2:011843085	0.0	C/11843085-11843254,11842819-11842987	AT2G27775.2  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G27800.1); Has 12 Blast hits to 12 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G27775.2p  transcript_id AT2G27775.2  protein_id AT2G27775.2p  transcript_id AT2G27775.2  
At2g27775	chr2:011843085	0.0	C/11843085-11843254,11842887-11842987,11842618-11842649	AT2G27775.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G27800.1); Has 12 Blast hits to 12 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G27775.1p  transcript_id AT2G27775.1  protein_id AT2G27775.1p  transcript_id AT2G27775.1  
At2g27780	chr2:011845472	0.0	C/11845472-11846578	AT2G27780.1  CDS  gene_syn F15K20.12, F15K20_12  go_component nucleus|GO:0005634||IEA  go_process transcription|GO:0006350||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: TFIIS N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27310.1); Has 511 Blast hits to 423 proteins in 85 species: Archae - 2; Bacteria - 45; Metazoa - 110; Fungi - 23; Plants - 63; Viruses - 2; Other Eukaryotes - 266 (source: NCBI BLink).  protein_id AT2G27780.1p  transcript_id AT2G27780.1  protein_id AT2G27780.1p  transcript_id AT2G27780.1  
At2g27790	chr2:011849224	0.0	C/11849224-11849285,11849064-11849147,11848913-11848993,11848332-11848471,11847898-11847979,11847745-11847808,11847578-11847640,11847335-11847481	AT2G27790.1  CDS  gene_syn F15K20.11, F15K20_11  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding / nucleotide binding  note nucleic acid binding / nucleotide binding; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27300.2); Has 120 Blast hits to 120 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 2; Plants - 16; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT2G27790.1p  transcript_id AT2G27790.1  protein_id AT2G27790.1p  transcript_id AT2G27790.1  
At2g27800	chr2:011851182	0.0	C/11851182-11851351,11850982-11851064,11849789-11850864	AT2G27800.1  CDS  gene_syn F15K20.10, F15K20_10  product unknown protein  note CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27300.1); Has 11283 Blast hits to 3897 proteins in 129 species: Archae - 1; Bacteria - 2; Metazoa - 118; Fungi - 74; Plants - 10832; Viruses - 0; Other Eukaryotes - 256 (source: NCBI BLink).  protein_id AT2G27800.1p  transcript_id AT2G27800.1  protein_id AT2G27800.1p  transcript_id AT2G27800.1  
At2g27810	chr2:011852338	0.0	W/11852338-11852875,11853079-11853176,11853257-11853430,11853819-11853919,11854031-11854166,11854332-11854382,11854550-11854837,11854964-11855198,11855408-11855552,11855767-11855770	AT2G27810.2  CDS  gene_syn F15K20.9, F15K20_9  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_function transmembrane transporter activity|GO:0022857||ISS  product xanthine/uracil permease family protein  note xanthine/uracil permease family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xanthine/uracil/vitamin C permease (InterPro:IPR006043), Helix-turn-helix, AraC type, subdomain 2 (InterPro:IPR018062); BEST Arabidopsis thaliana protein match is: transmembrane transporter (TAIR:AT4G38050.1); Has 5009 Blast hits to 4987 proteins in 949 species: Archae - 39; Bacteria - 3476; Metazoa - 422; Fungi - 130; Plants - 252; Viruses - 11; Other Eukaryotes - 679 (source: NCBI BLink).  protein_id AT2G27810.2p  transcript_id AT2G27810.2  protein_id AT2G27810.2p  transcript_id AT2G27810.2  
At2g27810	chr2:011852338	0.0	W/11852338-11852875,11853079-11853176,11853257-11853430,11853819-11853919,11854031-11854166,11854332-11854382,11854550-11854837,11854964-11855198,11855408-11855694,11855767-11855988	AT2G27810.1  CDS  gene_syn F15K20.9, F15K20_9  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_function transmembrane transporter activity|GO:0022857||ISS  product xanthine/uracil permease family protein  note xanthine/uracil permease family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: transmembrane transporter (TAIR:AT4G38050.1); Has 5162 Blast hits to 5132 proteins in 957 species: Archae - 39; Bacteria - 3489; Metazoa - 440; Fungi - 132; Plants - 329; Viruses - 13; Other Eukaryotes - 720 (source: NCBI BLink).  protein_id AT2G27810.1p  transcript_id AT2G27810.1  protein_id AT2G27810.1p  transcript_id AT2G27810.1  
At2g27810	chr2:011852338	0.0	W/11852338-11852875,11853079-11853176,11853257-11853430,11853819-11853919,11854031-11854166,11854332-11854382,11854550-11854837,11854964-11855202,11855408-11855411	AT2G27810.3  CDS  gene_syn F15K20.9, F15K20_9  go_component plasma membrane|GO:0005886|17317660|IDA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_function transmembrane transporter activity|GO:0022857||ISS  product xanthine/uracil permease family protein  note xanthine/uracil permease family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: transmembrane transporter (TAIR:AT4G38050.1); Has 4813 Blast hits to 4793 proteins in 925 species: Archae - 39; Bacteria - 3405; Metazoa - 419; Fungi - 105; Plants - 243; Viruses - 10; Other Eukaryotes - 592 (source: NCBI BLink).  protein_id AT2G27810.3p  transcript_id AT2G27810.3  protein_id AT2G27810.3p  transcript_id AT2G27810.3  
At2g27820	chr2:011856808	0.0	W/11856808-11858082	AT2G27820.1  CDS  gene_syn ADT3, F15K20.8, F15K20_8, PD1, PREPHENATE DEHYDRATASE 1, arogenate dehydratase 3  gene PD1  function Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identi& 64257;ed in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250].  go_component cytosol|GO:0005829|16415218|IMP  go_component chloroplast|GO:0009507|19136569|IDA  go_process tyrosine biosynthetic process|GO:0006571|16415218|IMP  go_process L-phenylalanine biosynthetic process|GO:0009094|16415218|IMP  go_process L-phenylalanine biosynthetic process|GO:0009094||ISS  go_process response to low fluence blue light stimulus by blue low-fluence system|GO:0010244|16415218|IMP  go_function prephenate dehydratase activity|GO:0004664||ISS  go_function arogenate dehydratase activity|GO:0047769|17726025|IDA  product PD1 (PREPHENATE DEHYDRATASE 1); arogenate dehydratase/ prephenate dehydratase  note PREPHENATE DEHYDRATASE 1 (PD1); FUNCTIONS IN: arogenate dehydratase activity, prephenate dehydratase activity; INVOLVED IN: tyrosine biosynthetic process, response to low fluence blue light stimulus by blue low-fluence system, L-phenylalanine biosynthetic process; LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prephenate dehydratase (InterPro:IPR001086), Prephenate dehydratase, conserved site (InterPro:IPR018528); BEST Arabidopsis thaliana protein match is: ADT6 (arogenate dehydratase 6); arogenate dehydratase/ prephenate dehydratase (TAIR:AT1G08250.1); Has 4952 Blast hits to 4952 proteins in 1198 species: Archae - 120; Bacteria - 2082; Metazoa - 4; Fungi - 70; Plants - 134; Viruses - 0; Other Eukaryotes - 2542 (source: NCBI BLink).  protein_id AT2G27820.1p  transcript_id AT2G27820.1  protein_id AT2G27820.1p  transcript_id AT2G27820.1  
At2g27830	chr2:011860734	0.0	W/11860734-11861306	AT2G27830.1  CDS  gene_syn F15K20.7, F15K20_7  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G22760.1); Has 68 Blast hits to 68 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G27830.1p  transcript_id AT2G27830.1  protein_id AT2G27830.1p  transcript_id AT2G27830.1  
At2g27840	chr2:011862085	0.0	W/11862085-11862097,11862542-11862612,11862705-11862925,11863038-11863057,11863142-11863177,11863271-11863329,11863421-11863562,11863658-11863707	AT2G27840.1  CDS  gene_syn F15K20.6, F15K20_6, HDA13, HDT04, HDT4, HISTONE DEACETYLASE, HISTONE DEACETYLASE 13  gene HDT4  function Belongs to the plant specific HD2 type proteins; similar to nucleolar Zea mays histone deacetylase; HD2-p39  go_component nucleolus|GO:0005730|15496452|IDA  go_process biological_process|GO:0008150||ND  go_function histone deacetylase activity|GO:0004407|12466527|ISS  product HDT4; histone deacetylase  note HDT4; FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: HDA3 (HISTONE DEACETYLASE 3); histone deacetylase/ nucleic acid binding / zinc ion binding (TAIR:AT3G44750.1); Has 690 Blast hits to 619 proteins in 144 species: Archae - 0; Bacteria - 122; Metazoa - 190; Fungi - 56; Plants - 108; Viruses - 18; Other Eukaryotes - 196 (source: NCBI BLink).  protein_id AT2G27840.1p  transcript_id AT2G27840.1  protein_id AT2G27840.1p  transcript_id AT2G27840.1  
At2g27840	chr2:011862595	0.0	W/11862595-11862612,11862705-11862925,11863038-11863057,11863142-11863177,11863271-11863329,11863421-11863562,11863658-11863707	AT2G27840.2  CDS  gene_syn F15K20.6, F15K20_6, HDA13, HDT04, HDT4, HISTONE DEACETYLASE, HISTONE DEACETYLASE 13  gene HDT4  function Belongs to the plant specific HD2 type proteins; similar to nucleolar Zea mays histone deacetylase; HD2-p39  go_component nucleolus|GO:0005730|15496452|IDA  go_process biological_process|GO:0008150||ND  go_function histone deacetylase activity|GO:0004407|12466527|ISS  product HDT4; histone deacetylase  note HDT4; FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: HDA3 (HISTONE DEACETYLASE 3); histone deacetylase/ nucleic acid binding / zinc ion binding (TAIR:AT3G44750.1); Has 633 Blast hits to 570 proteins in 139 species: Archae - 0; Bacteria - 119; Metazoa - 178; Fungi - 55; Plants - 94; Viruses - 18; Other Eukaryotes - 169 (source: NCBI BLink).  protein_id AT2G27840.2p  transcript_id AT2G27840.2  protein_id AT2G27840.2p  transcript_id AT2G27840.2  
At2g27850	chr2:011864154	0.0	C/11864154-11864225	AT2G27850.1  tRNA  gene_syn 42596.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: TCC)  transcript_id AT2G27850.1  
At2g27860	chr2:011866568	0.0	C/11866568-11866843,11866317-11866409,11866108-11866215,11865714-11865828,11865505-11865638,11865315-11865416,11865113-11865205,11864888-11865023,11864684-11864796	AT2G27860.1  CDS  gene_syn AXS1, F15K20.4, F15K20_4, UDP-D-apiose/UDP-D-xylose synthase 1  gene AXS1  function Encodes UDP-d-apiose/UDP-d-xylose synthase that requires NAD+ for enzymatic activity and is strongly inhibited by UDP-d-galacturonate.  go_component cytoplasm|GO:0005737|12969423|NAS  go_process nucleotide-sugar biosynthetic process|GO:0009226|12969423|IDA  go_function UDP-glucuronate decarboxylase activity|GO:0048040|12969423|IDA  go_function NAD or NADH binding|GO:0051287|12969423|IDA  product AXS1 (UDP-D-apiose/UDP-D-xylose synthase 1); NAD or NADH binding / UDP-glucuronate decarboxylase  note UDP-D-apiose/UDP-D-xylose synthase 1 (AXS1); FUNCTIONS IN: NAD or NADH binding, UDP-glucuronate decarboxylase activity; INVOLVED IN: nucleotide-sugar biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: AXS2 (UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 2); UDP-glucuronate decarboxylase (TAIR:AT1G08200.1); Has 13303 Blast hits to 13296 proteins in 1525 species: Archae - 303; Bacteria - 6769; Metazoa - 230; Fungi - 58; Plants - 756; Viruses - 11; Other Eukaryotes - 5176 (source: NCBI BLink).  protein_id AT2G27860.1p  transcript_id AT2G27860.1  protein_id AT2G27860.1p  transcript_id AT2G27860.1  
At2g27870	chr2:011867251	0.0	C/11867251-11868195	AT2G27870.1  mRNA_TE_gene  pseudo  gene_syn T1E2.21  note Transposable element gene, similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G22350.1); similar to Ribonuclease H [Medicago truncatula] (GB:ABD28505.1); contains InterPro domain Ribonuclease H; (InterPro:IPR002156); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)  
At2g27880	chr2:011871488	0.0	W/11871488-11872027,11872446-11872651,11872739-11872888,11872975-11873123,11873271-11873380,11873482-11873585,11873709-11873844,11873938-11874054,11874168-11874272,11874367-11874438,11874676-11874798,11874890-11875028,11875112-11875233,11875297-11875434,11875514-11875656,11875739-11875801,11875879-11876078,11876163-11876236,11876323-11876417,11876505-11876712	AT2G27880.1  CDS  gene_syn AGO5, ARGONAUTE 5, T1E2.20, T1E2_20  gene AGO5  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product AGO5 (ARGONAUTE 5); nucleic acid binding  note ARGONAUTE 5 (AGO5); FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Argonaute and Dicer protein, PAZ (InterPro:IPR003100), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: AGO1 (ARGONAUTE 1); endoribonuclease/ miRNA binding / protein binding / siRNA binding (TAIR:AT1G48410.1); Has 2002 Blast hits to 1872 proteins in 212 species: Archae - 0; Bacteria - 69; Metazoa - 1140; Fungi - 212; Plants - 373; Viruses - 6; Other Eukaryotes - 202 (source: NCBI BLink).  protein_id AT2G27880.1p  transcript_id AT2G27880.1  protein_id AT2G27880.1p  transcript_id AT2G27880.1  
At2g27900	chr2:011877654	0.0	W/11877654-11877911,11877996-11878163,11878249-11878323,11878444-11878522,11878593-11878657,11878775-11878864,11879240-11879329,11879444-11879530,11879614-11879697,11879840-11879959,11880356-11880384,11880509-11880641,11881288-11881803,11881933-11882465,11882579-11882642,11882740-11882842,11882992-11883176,11883372-11883497,11883788-11883858,11884026-11884088,11884161-11884233,11884486-11884605,11884804-11884881,11884973-11885023,11885125-11885238	AT2G27900.1  CDS  gene_syn AT2G27890, AT2G27910, T1E2.18, T1E2_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 244 Blast hits to 190 proteins in 64 species: Archae - 0; Bacteria - 0; Metazoa - 177; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT2G27900.1p  transcript_id AT2G27900.1  protein_id AT2G27900.1p  transcript_id AT2G27900.1  
At2g27900	chr2:011877654	0.0	W/11877654-11877911,11877996-11878163,11878249-11878323,11878444-11878522,11878593-11878657,11878775-11878864,11879240-11879329,11879444-11879530,11879614-11879697,11879840-11879959,11880356-11880384,11880509-11880641,11881288-11881803,11881933-11882465,11882579-11882642,11882740-11882842,11882992-11883176,11883372-11883497,11883788-11883858,11884026-11884088,11884161-11884233,11884486-11884605,11884804-11884881,11884973-11885023,11885125-11885238	AT2G27900.2  CDS  gene_syn AT2G27890, AT2G27910, T1E2.18, T1E2_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 244 Blast hits to 190 proteins in 64 species: Archae - 0; Bacteria - 0; Metazoa - 177; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT2G27900.2p  transcript_id AT2G27900.2  protein_id AT2G27900.2p  transcript_id AT2G27900.2  
At2g27920	chr2:011888489	0.0	C/11888489-11888605,11888014-11888260,11887867-11887910,11887709-11887776,11887517-11887622,11887208-11887419,11887042-11887111,11886876-11886926,11886687-11886739,11886305-11886437,11885777-11885845	AT2G27920.2  CDS  gene_syn SCPL51, SERINE CARBOXYPEPTIDASE-LIKE 51, T1E2.16, T1E2_16  gene SCPL51  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product SCPL51 (SERINE CARBOXYPEPTIDASE-LIKE 51); serine-type carboxypeptidase  note SERINE CARBOXYPEPTIDASE-LIKE 51 (SCPL51); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl50 (serine carboxypeptidase-like 50); serine-type carboxypeptidase (TAIR:AT1G15000.1); Has 2013 Blast hits to 1916 proteins in 214 species: Archae - 0; Bacteria - 58; Metazoa - 580; Fungi - 414; Plants - 754; Viruses - 0; Other Eukaryotes - 207 (source: NCBI BLink).  protein_id AT2G27920.2p  transcript_id AT2G27920.2  protein_id AT2G27920.2p  transcript_id AT2G27920.2  
At2g27920	chr2:011888699	0.0	C/11888699-11888732,11888489-11888596,11888014-11888250,11887867-11887910,11887709-11887776,11887517-11887622,11887208-11887419,11887042-11887111,11886876-11886926,11886687-11886739,11886305-11886437,11885777-11885845	AT2G27920.3  CDS  gene_syn SCPL51, SERINE CARBOXYPEPTIDASE-LIKE 51, T1E2.16, T1E2_16  gene SCPL51  go_component mitochondrion|GO:0005739||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product SCPL51 (SERINE CARBOXYPEPTIDASE-LIKE 51); serine-type carboxypeptidase  note SERINE CARBOXYPEPTIDASE-LIKE 51 (SCPL51); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl48 (serine carboxypeptidase-like 48); serine-type carboxypeptidase (TAIR:AT3G45010.1); Has 1325 Blast hits to 1306 proteins in 178 species: Archae - 0; Bacteria - 6; Metazoa - 506; Fungi - 317; Plants - 345; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).  protein_id AT2G27920.3p  transcript_id AT2G27920.3  protein_id AT2G27920.3p  transcript_id AT2G27920.3  
At2g27920	chr2:011888914	0.0	C/11888914-11889043,11888699-11888793,11888489-11888596,11888014-11888260,11887867-11887910,11887709-11887776,11887517-11887622,11887208-11887419,11887042-11887111,11886876-11886926,11886687-11886739,11886305-11886437,11885777-11885845	AT2G27920.1  CDS  gene_syn SCPL51, SERINE CARBOXYPEPTIDASE-LIKE 51, T1E2.16, T1E2_16  gene SCPL51  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product SCPL51 (SERINE CARBOXYPEPTIDASE-LIKE 51); serine-type carboxypeptidase  note SERINE CARBOXYPEPTIDASE-LIKE 51 (SCPL51); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl50 (serine carboxypeptidase-like 50); serine-type carboxypeptidase (TAIR:AT1G15000.1); Has 2651 Blast hits to 2457 proteins in 329 species: Archae - 0; Bacteria - 296; Metazoa - 608; Fungi - 618; Plants - 820; Viruses - 0; Other Eukaryotes - 309 (source: NCBI BLink).  protein_id AT2G27920.1p  transcript_id AT2G27920.1  protein_id AT2G27920.1p  transcript_id AT2G27920.1  
At2g27930	chr2:011892369	0.0	W/11892369-11892542,11892634-11892876,11893336-11893488	AT2G27930.1  CDS  gene_syn T1E2.15, T1E2_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function binding|GO:0005488||ISS  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734); BEST Arabidopsis thaliana protein match is: zinc-binding family protein (TAIR:AT1G32700.1); Has 188 Blast hits to 188 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 188; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G27930.1p  transcript_id AT2G27930.1  protein_id AT2G27930.1p  transcript_id AT2G27930.1  
At2g27935	chr2:011894592	0.0	W/11894592-11895549	AT2G27935.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 5.2e-17 P-value blast match to GB:BAA11674 ORF(AA 1-1338) (Ty1_Copia-element) (Nicotiana tabacum)  
At2g27936	chr2:011896128	0.0	W/11896128-11896590	AT2G27936.1  pseudogenic_transcript  pseudo  function Pseudogene of AT4G10895; Expressed protein  
At2g27940	chr2:011897963	0.0	W/11897963-11898319,11898386-11898742	AT2G27940.1  CDS  gene_syn T1E2.14, T1E2_14  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: leaf apex, root, carpel, leaf; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: ATL6; protein binding / zinc ion binding (TAIR:AT3G05200.1); Has 6493 Blast hits to 6471 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 2123; Fungi - 541; Plants - 2693; Viruses - 43; Other Eukaryotes - 1093 (source: NCBI BLink).  protein_id AT2G27940.1p  transcript_id AT2G27940.1  protein_id AT2G27940.1p  transcript_id AT2G27940.1  
At2g27950	chr2:011902347	0.0	C/11902347-11903171,11901541-11901659,11900579-11901457,11900012-11900492	AT2G27950.1  CDS  gene_syn T1E2.13, T1E2_13  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT5G04460.1); Has 502 Blast hits to 402 proteins in 102 species: Archae - 0; Bacteria - 164; Metazoa - 106; Fungi - 26; Plants - 62; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).  protein_id AT2G27950.1p  transcript_id AT2G27950.1  protein_id AT2G27950.1p  transcript_id AT2G27950.1  
At2g27960	chr2:011911491	0.0	C/11911491-11911543,11911355-11911415,11910903-11911052	AT2G27960.1  CDS  gene_syn CATALYTIC SUBUNIT OF CYCLIN-DEPENDENT KINASE, CKS1, CKS1AT, CYCLIN-DEPENDENT KINASE-SUBUNIT 1, P10CKS1AT, T1E2.12, T1E2_12  gene CKS1  function catalytic subunit of cyclin dependent kinase 1. physically interact with cyclin-dependent kinases (CDKs) and play an essential, but yet not entirely resolved, role in the regulation of the cell cycle  go_component cellular_component|GO:0005575||ND  go_process mitotic cell cycle|GO:0000278|10093894|IDA  go_process DNA endoreduplication|GO:0042023|10093894|IDA  go_process DNA endoreduplication|GO:0042023|11319029|IMP  go_process regulation of cell cycle|GO:0051726|11319029|IMP  go_function cyclin-dependent protein kinase activity|GO:0004693||ISS  go_function protein binding|GO:0005515|17426018|IPI  product CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1); cyclin-dependent protein kinase/ protein binding  note CYCLIN-DEPENDENT KINASE-SUBUNIT 1 (CKS1); FUNCTIONS IN: protein binding, cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle, mitotic cell cycle, DNA endoreduplication; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-dependent kinase, regulatory subunit (InterPro:IPR000789); BEST Arabidopsis thaliana protein match is: CKS2 (CDK-subunit 2); cyclin-dependent protein kinase/ cyclin-dependent protein kinase regulator (TAIR:AT2G27970.1); Has 499 Blast hits to 499 proteins in 145 species: Archae - 0; Bacteria - 0; Metazoa - 246; Fungi - 99; Plants - 70; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT2G27960.1p  transcript_id AT2G27960.1  protein_id AT2G27960.1p  transcript_id AT2G27960.1  
At2g27970	chr2:011913060	0.0	C/11913060-11913112,11912905-11912965,11912460-11912597	AT2G27970.1  CDS  gene_syn CDK-subunit 2, CKS2, T1E2.11, T1E2_11  gene CKS2  go_process cell cycle|GO:0007049||IEA  go_function cyclin-dependent protein kinase regulator activity|GO:0016538||IEA  go_component cellular_component|GO:0005575||ND  go_process cell cycle|GO:0007049||ISS  go_function cyclin-dependent protein kinase activity|GO:0004693||ISS  product CKS2 (CDK-subunit 2); cyclin-dependent protein kinase/ cyclin-dependent protein kinase regulator  note CDK-subunit 2 (CKS2); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity, cyclin-dependent protein kinase activity; INVOLVED IN: cell cycle; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-dependent kinase, regulatory subunit (InterPro:IPR000789); BEST Arabidopsis thaliana protein match is: CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1); cyclin-dependent protein kinase/ protein binding (TAIR:AT2G27960.1); Has 499 Blast hits to 499 proteins in 145 species: Archae - 0; Bacteria - 0; Metazoa - 246; Fungi - 99; Plants - 70; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT2G27970.1p  transcript_id AT2G27970.1  protein_id AT2G27970.1p  transcript_id AT2G27970.1  
At2g27980	chr2:011918536	0.0	C/11918536-11919741,11918371-11918457,11918079-11918280,11917847-11917961,11917421-11917513,11917118-11917210,11916899-11916980,11916758-11916817,11916618-11916670,11916112-11916233,11915737-11915950,11915527-11915584,11915379-11915435,11915040-11915297,11914902-11914966,11914769-11914825,11914585-11914678,11914149-11914289,11913950-11914066	AT2G27980.1  CDS  gene_syn T1E2.10, T1E2_10  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: PHD finger transcription factor, putative (TAIR:AT2G36720.1); Has 226 Blast hits to 210 proteins in 41 species: Archae - 0; Bacteria - 2; Metazoa - 60; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT2G27980.1p  transcript_id AT2G27980.1  protein_id AT2G27980.1p  transcript_id AT2G27980.1  
At2g27990	chr2:011922904	0.0	C/11922904-11923902,11922466-11922815,11922309-11922369,11921540-11921884	AT2G27990.1  CDS  gene_syn BEL1-LIKE HOMEODOMAIN 8, BLH8, PNF, POUND-FOOLISH, T1E2.9, T1E2_9  gene BLH8  function Encodes a BEL1-like homeobox gene that functions together with PNY in meristem maintenance by regulating the allocation process during vegetative and reproductive development. Both gene products are required for the competence of the SAM to respond properly to floral inductive signals.  go_component nucleus|GO:0005634||IEA  go_process pattern specification process|GO:0007389|16741748|IGI  go_process maintenance of floral meristem identity|GO:0010076|15120075|IGI  go_process maintenance of inflorescence meristem identity|GO:0010077|18298668|IGI  go_process secondary shoot formation|GO:0010223|18298668|IGI  go_process vegetative to reproductive phase transition|GO:0010228|15120075|IGI  go_process inflorescence development|GO:0010229|16741748|IGI  go_process organ formation|GO:0048645|15120075|IGI  go_process internode patterning|GO:0080006|16741748|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product BLH8 (BEL1-LIKE HOMEODOMAIN 8); DNA binding / transcription factor  note BEL1-LIKE HOMEODOMAIN 8 (BLH8); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 9 processes; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: RPL (REPLUMLESS); DNA binding / sequence-specific DNA binding / transcription factor (TAIR:AT5G02030.1); Has 4113 Blast hits to 4112 proteins in 264 species: Archae - 0; Bacteria - 0; Metazoa - 1791; Fungi - 187; Plants - 2029; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).  protein_id AT2G27990.1p  transcript_id AT2G27990.1  protein_id AT2G27990.1p  transcript_id AT2G27990.1  
At2g28000	chr2:011926603	0.0	W/11926603-11926656,11926971-11927154,11927252-11927373,11927448-11927655,11927741-11927886,11927969-11928275,11928361-11928812,11928897-11929184	AT2G28000.1  CDS  gene_syn CH-CPN60A, CHAPERONIN-60ALPHA, CHLOROPLAST CHAPERONIN 60ALPHA, CPN60A, SCHLEPPERLESS, SLP, T1E2.8, T1E2_8  gene CPN60A  function Encodes chaperonin-60 alpha, a molecular chaperone involved in Rubisco folding. Mutants display aberrant chloroplast and embryo development.  go_component mitochondrion|GO:0005739|18385124|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component chloroplast|GO:0009507|11402200|ISS  go_component chloroplast|GO:0009507||IDA  go_process protein folding|GO:0006457|11402200|TAS  go_process protein folding|GO:0006457||TAS  go_process chloroplast organization|GO:0009658|11402200|IMP  go_process embryonic development|GO:0009790|11402200|IMP  product CPN60A (CHAPERONIN-60ALPHA); ATP binding / protein binding  note CHAPERONIN-60ALPHA (CPN60A); FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: embryonic development, protein folding, chloroplast organization; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: EMB3007 (embryo defective 3007); ATP binding / protein binding (TAIR:AT5G18820.1); Has 24210 Blast hits to 24203 proteins in 5112 species: Archae - 384; Bacteria - 13984; Metazoa - 1442; Fungi - 936; Plants - 429; Viruses - 2; Other Eukaryotes - 7033 (source: NCBI BLink).  protein_id AT2G28000.1p  transcript_id AT2G28000.1  protein_id AT2G28000.1p  transcript_id AT2G28000.1  
At2g28010	chr2:011930579	0.0	C/11930579-11931769	AT2G28010.1  CDS  gene_syn T1E2.7, T1E2_7  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT2G28030.1); Has 2317 Blast hits to 2304 proteins in 219 species: Archae - 0; Bacteria - 0; Metazoa - 765; Fungi - 354; Plants - 1029; Viruses - 0; Other Eukaryotes - 169 (source: NCBI BLink).  protein_id AT2G28010.1p  transcript_id AT2G28010.1  protein_id AT2G28010.1p  transcript_id AT2G28010.1  
At2g28020	chr2:011933728	0.0	W/11933728-11933940	AT2G28020.1  CDS  gene_syn T1E2.6, T1E2_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TATA-binding related factor (InterPro:IPR013921); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28230.1); Has 18 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G28020.1p  transcript_id AT2G28020.1  protein_id AT2G28020.1p  transcript_id AT2G28020.1  
At2g28030	chr2:011934208	0.0	C/11934208-11935386	AT2G28030.1  CDS  gene_syn T1E2.2  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT2G28010.1); Has 2181 Blast hits to 2171 proteins in 217 species: Archae - 0; Bacteria - 0; Metazoa - 639; Fungi - 390; Plants - 1021; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).  protein_id AT2G28030.1p  transcript_id AT2G28030.1  protein_id AT2G28030.1p  transcript_id AT2G28030.1  
At2g28040	chr2:011936203	0.0	C/11936203-11937390	AT2G28040.1  CDS  gene_syn T1E2.5  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT2G28010.1); Has 2189 Blast hits to 2178 proteins in 233 species: Archae - 0; Bacteria - 0; Metazoa - 676; Fungi - 359; Plants - 1022; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).  protein_id AT2G28040.1p  transcript_id AT2G28040.1  protein_id AT2G28040.1p  transcript_id AT2G28040.1  
At2g28050	chr2:011938265	0.0	C/11938265-11939653	AT2G28050.1  CDS  gene_syn T1E2.3, T1E2_3  go_component cellular_component|GO:0005575||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G32630.1); Has 11939 Blast hits to 4519 proteins in 151 species: Archae - 1; Bacteria - 37; Metazoa - 129; Fungi - 46; Plants - 11408; Viruses - 0; Other Eukaryotes - 318 (source: NCBI BLink).  protein_id AT2G28050.1p  transcript_id AT2G28050.1  protein_id AT2G28050.1p  transcript_id AT2G28050.1  
At2g28053	chr2:011939853	0.0	C/11939853-11940239	AT2G28053.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.6e-06 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At2g28056	chr2:011941661	0.0	C/11941661-11943604	AT2G28056.1  miRNA  gene_syn MICRORNA 172, MICRORNA 172A, MIR172, MIR172A  gene MIR172A  function Encodes a microRNA that targets several genes containing AP2 domains including AP2. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: AGAAUCUUGAUGAUGCUGCAU  go_component cellular_component|GO:0005575||ND  go_process gene silencing by miRNA|GO:0035195|15200956|TAS  go_process photoperiodism, flowering|GO:0048573|17890372|IEP  go_function molecular_function|GO:0003674||ND  product MIR172A (MICRORNA 172A); miRNA  note expressed protein  transcript_id AT2G28056.1  
At2g28060	chr2:011950592	0.0	C/11950592-11950618,11950174-11950491	AT2G28060.1  CDS  gene_syn F24D13.15, F24D13_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product protein kinase-related  note protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 5-AMP-activated protein kinase, beta subunit, complex-interacting region (InterPro:IPR006828); BEST Arabidopsis thaliana protein match is: 5 -AMP-activated protein kinase beta-2 subunit, putative (TAIR:AT5G21170.2); Has 275 Blast hits to 275 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 169; Fungi - 16; Plants - 80; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT2G28060.1p  transcript_id AT2G28060.1  protein_id AT2G28060.1p  transcript_id AT2G28060.1  
At2g28070	chr2:011956432	0.0	W/11956432-11956927,11956996-11957075,11957160-11957446,11957540-11957711,11957807-11957920,11958018-11958146,11958249-11958440,11958524-11958610,11958693-11958965,11959333-11959440,11959528-11959782	AT2G28070.1  CDS  gene_syn F24D13.14, F24D13_14  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ABC transporter family protein  note ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11); ATPase, coupled to transmembrane movement of substances / fatty acid transporter (TAIR:AT1G17840.1); Has 143746 Blast hits to 138921 proteins in 2372 species: Archae - 2963; Bacteria - 103377; Metazoa - 4456; Fungi - 2882; Plants - 1906; Viruses - 6; Other Eukaryotes - 28156 (source: NCBI BLink).  protein_id AT2G28070.1p  transcript_id AT2G28070.1  protein_id AT2G28070.1p  transcript_id AT2G28070.1  
At2g28080	chr2:011962690	0.0	C/11962690-11963227,11960774-11961684	AT2G28080.1  CDS  gene_syn F24D13.13, F24D13_13  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyltransferase family protein  note glycosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT2G36970.1); Has 3265 Blast hits to 3243 proteins in 233 species: Archae - 0; Bacteria - 17; Metazoa - 483; Fungi - 9; Plants - 2717; Viruses - 26; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT2G28080.1p  transcript_id AT2G28080.1  protein_id AT2G28080.1p  transcript_id AT2G28080.1  
At2g28085	chr2:011968182	0.0	C/11968182-11968556	AT2G28085.1  CDS  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT4G34760.1); Has 654 Blast hits to 643 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 653; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G28085.1p  transcript_id AT2G28085.1  protein_id AT2G28085.1p  transcript_id AT2G28085.1  
At2g28090	chr2:011973845	0.0	C/11973845-11974007,11973181-11973371,11972807-11972894,11972398-11972693	AT2G28090.1  CDS  gene_syn F24D13.12, F24D13_12  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT5G60800.1); Has 795 Blast hits to 561 proteins in 68 species: Archae - 0; Bacteria - 54; Metazoa - 6; Fungi - 2; Plants - 718; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT2G28090.1p  transcript_id AT2G28090.1  protein_id AT2G28090.1p  transcript_id AT2G28090.1  
At2g28100	chr2:011974803	0.0	W/11974803-11975344,11975425-11975661,11975748-11976489	AT2G28100.1  CDS  gene_syn ATFUC1, F24D13.11, F24D13_11, alpha-L-fucosidase 1  gene ATFUC1  function Encodes a protein with & 945;-fucosidase activity. The activity was assessed on 2 -fucosyl-lactitol. AtFUC1 was not able to act on XXFG substrates, at least when heterologously expressed in <i>Pichia pastoris</i>. The enzyme has been postulated to act on fucosylated substrates other than xyloglucan oligosaccharides. was shown (<i>Pichia pastoris</i>) to hydrolyze fucose in 3- and 4-linkage , hence was characterized as alpha-L-3,4-fucosidase  go_component vacuole|GO:0005773|15539469|IDA  go_process glycoprotein catabolic process|GO:0006516|16516937|TAS  go_function alpha-L-fucosidase activity|GO:0004560|11788770|IDA  go_function alpha-L-fucosidase activity|GO:0004560|16516937|IDA  go_function alpha-L-fucosidase activity|GO:0004560||ISS  product ATFUC1 (alpha-L-fucosidase 1); alpha-L-fucosidase  note alpha-L-fucosidase 1 (ATFUC1); FUNCTIONS IN: alpha-L-fucosidase activity; INVOLVED IN: glycoprotein catabolic process; LOCATED IN: vacuole; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 29 (InterPro:IPR000933), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); Has 1087 Blast hits to 1083 proteins in 203 species: Archae - 4; Bacteria - 647; Metazoa - 179; Fungi - 4; Plants - 20; Viruses - 0; Other Eukaryotes - 233 (source: NCBI BLink).  protein_id AT2G28100.1p  transcript_id AT2G28100.1  protein_id AT2G28100.1p  transcript_id AT2G28100.1  
At2g28105	chr2:011976764	0.0	W/11976764-11976940,11977306-11977426,11977511-11977713	AT2G28105.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027); Has 12 Blast hits to 12 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G28105.1p  transcript_id AT2G28105.1  protein_id AT2G28105.1p  transcript_id AT2G28105.1  
At2g28110	chr2:011979377	0.0	C/11979377-11979641,11978910-11979277,11978584-11978834,11978024-11978486	AT2G28110.1  CDS  gene_syn F24D13.10, F24D13_10, FRA8, FRAGILE FIBER 8, IRREGULAR XYLEM 7, IRX7  gene FRA8  function Homolog to AT5G22940, a member of glycosyltransferase family 47 that is involved in secondary cell wall biosynthesis. It exhibits high sequence similarity to tobacco (Nicotiana plumbaginifolia) pectin glucuronyltransferase. Protein has a domain that shares significant similarity with the pfam03016 domain. It is expressed specifically in developing vessels and fiber cells, and FRA8 is targeted to Golgi. Mutants have irregular xylem formation, reduced cellulose levels and plants are smaller than normal siblings.  go_component Golgi apparatus|GO:0005794|16272433|IDA  go_process secondary cell wall biogenesis|GO:0009834|15980264|IMP  go_process secondary cell wall biogenesis|GO:0009834|16272433|IMP  go_process glucuronoxylan biosynthetic process|GO:0010417|17237350|TAS  go_process glucuronoxylan biosynthetic process|GO:0010417|17944810|IMP  go_function glucuronosyltransferase activity|GO:0015020|16272433|ISS  go_function transferase activity|GO:0016740||ISS  product FRA8 (FRAGILE FIBER 8); glucuronosyltransferase/ transferase  note FRAGILE FIBER 8 (FRA8); FUNCTIONS IN: transferase activity, glucuronosyltransferase activity; INVOLVED IN: secondary cell wall biogenesis, glucuronoxylan biosynthetic process; LOCATED IN: Golgi apparatus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, seedling growth, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: F8H (FRA8 HOMOLOG); catalytic (TAIR:AT5G22940.1); Has 786 Blast hits to 781 proteins in 86 species: Archae - 0; Bacteria - 10; Metazoa - 215; Fungi - 4; Plants - 471; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT2G28110.1p  transcript_id AT2G28110.1  protein_id AT2G28110.1p  transcript_id AT2G28110.1  
At2g28120	chr2:011985934	0.0	W/11985934-11987667	AT2G28120.1  CDS  gene_syn F24D13.9, F24D13_9  go_component plasma membrane|GO:0005886|14506206|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  product nodulin family protein  note nodulin family protein; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nodulin family protein (TAIR:AT2G39210.1); Has 1963 Blast hits to 1906 proteins in 360 species: Archae - 7; Bacteria - 601; Metazoa - 40; Fungi - 143; Plants - 319; Viruses - 0; Other Eukaryotes - 853 (source: NCBI BLink).  protein_id AT2G28120.1p  transcript_id AT2G28120.1  protein_id AT2G28120.1p  transcript_id AT2G28120.1  
At2g28130	chr2:011988823	0.0	W/11988823-11988896,11989141-11989312,11989400-11989462,11989553-11989658,11989749-11989853,11989941-11990017,11990098-11990221,11990317-11990389,11990503-11990694,11990792-11990912,11991016-11991237,11991350-11991397	AT2G28130.1  CDS  gene_syn F24D13.8, F24D13_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; Has 20 Blast hits to 20 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G28130.1p  transcript_id AT2G28130.1  protein_id AT2G28130.1p  transcript_id AT2G28130.1  
At2g28140	chr2:011995091	0.0	W/11995091-11995153,11995236-11995808	AT2G28140.1  CDS  gene_syn F24D13.7, F24D13_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1635 (InterPro:IPR012862); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22930.1); Has 43 Blast hits to 42 proteins in 8 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G28140.1p  transcript_id AT2G28140.1  protein_id AT2G28140.1p  transcript_id AT2G28140.1  
At2g28150	chr2:012000015	0.0	W/12000015-12000210,12000284-12000353,12000435-12000550,12000630-12001542,12001799-12002068,12002170-12002227	AT2G28150.1  CDS  gene_syn F24D13.6, F24D13_6  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF966 (InterPro:IPR010369); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59790.1); Has 2340 Blast hits to 541 proteins in 129 species: Archae - 0; Bacteria - 271; Metazoa - 414; Fungi - 193; Plants - 104; Viruses - 4; Other Eukaryotes - 1354 (source: NCBI BLink).  protein_id AT2G28150.1p  transcript_id AT2G28150.1  protein_id AT2G28150.1p  transcript_id AT2G28150.1  
At2g28160	chr2:012004713	0.0	W/12004713-12005189,12005271-12005471,12005547-12005723,12005807-12005908	AT2G28160.1  CDS  gene_syn ATBHLH029, ATBHLH29, BASIC HELIX-LOOP-HELIX PROTEIN 29, BHLH029, F24D13.5, F24D13_5, FE-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1, FER-LIKE REGULATOR OF IRON UPTAKE, FIT1, FRU  gene FRU  function Encodes a putative transcription factor that regulates iron uptake responses. mRNA is detected in the outer cell layers of the root and accumulates in response to iron deficiency. The expression of many iron-regulated genes is dependent on FIT1. It specifically regulates FRO2 at the level of mRNA accumulation and IRT1 at the level of protein accumulation.Similar to FER in tomato and is a regulator of iron uptake.  go_component nucleus|GO:0005634||IEA  go_process response to cytokinin stimulus|GO:0009735|18397377|IEP  go_process response to iron ion|GO:0010039|15539473|IMP  go_process regulation of iron ion transport|GO:0034756|19154225|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product FRU (FER-LIKE REGULATOR OF IRON UPTAKE); DNA binding / transcription factor  note FER-LIKE REGULATOR OF IRON UPTAKE (FRU); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of iron ion transport, response to iron ion, response to cytokinin stimulus, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: AMS (ABORTED MICROSPORES); DNA binding / transcription factor (TAIR:AT2G16910.1); Has 1288 Blast hits to 1288 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 6; Plants - 1278; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G28160.1p  transcript_id AT2G28160.1  protein_id AT2G28160.1p  transcript_id AT2G28160.1  
At2g28170	chr2:012008276	0.0	C/12008276-12009016,12007012-12007677,12006371-12006817	AT2G28170.1  CDS  gene_syn ATCHX7, CATION/H+ EXCHANGER 7, CHX7, F24D13.4, F24D13_4  gene ATCHX7  function member of Putative Na+/H+ antiporter family  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|IC  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product ATCHX7; monovalent cation:proton antiporter/ sodium:hydrogen antiporter  note ATCHX7; FUNCTIONS IN: monovalent cation:proton antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte, pollen tube; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: ATCHX6A (CATION/H+ EXCHANGER 6A); monovalent cation:proton antiporter/ sodium:hydrogen antiporter (TAIR:AT1G08140.1); Has 393 Blast hits to 383 proteins in 93 species: Archae - 6; Bacteria - 89; Metazoa - 0; Fungi - 66; Plants - 225; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT2G28170.1p  transcript_id AT2G28170.1  protein_id AT2G28170.1p  transcript_id AT2G28170.1  
At2g28180	chr2:012013443	0.0	C/12013443-12013832,12012341-12013357,12011566-12012231,12010994-12011464	AT2G28180.1  CDS  gene_syn ATCHX8, CATION/H+ EXCHANGER 8, CHX08, CHX8, F24D13.3, F24D13_3  gene ATCHX8  function member of Putative Na+/H+ antiporter family  go_component mitochondrion|GO:0005739|14671022|IDA  go_process cation transport|GO:0006812|11500563|IC  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product ATCHX8; monovalent cation:proton antiporter/ sodium:hydrogen antiporter  note ATCHX8; FUNCTIONS IN: monovalent cation:proton antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: mitochondrion; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: ATCHX5; monovalent cation:proton antiporter/ sodium:hydrogen antiporter (TAIR:AT1G08150.1); Has 2218 Blast hits to 2205 proteins in 696 species: Archae - 136; Bacteria - 1559; Metazoa - 0; Fungi - 91; Plants - 233; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink).  protein_id AT2G28180.1p  transcript_id AT2G28180.1  protein_id AT2G28180.1p  transcript_id AT2G28180.1  
At2g28190	chr2:012014548	0.0	W/12014548-12014812,12015233-12015294,12015382-12015421,12015514-12015609,12015704-12015735,12015832-12015907,12016064-12016117,12016278-12016303	AT2G28190.1  CDS  gene_syn COPPER/ZINC SUPEROXIDE DISMUTASE, COPPER/ZINC SUPEROXIDE DISMUTASE 2, CSD2, CZSOD2, F24D13.2, F24D13_2  gene CSD2  function Encodes a chloroplastic copper/zinc superoxide dismutase CSD2 that can detoxify superoxide radicals. Its expression is affected by miR398-directed mRNA cleavage.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_component chloroplast|GO:0009507|9765550|IDA  go_process response to stress|GO:0006950|16861386|IMP  go_process response to oxidative stress|GO:0006979|15772282|IDA  go_process response to light stimulus|GO:0009416|9765550|IEP  go_process response to iron ion|GO:0010039|16861386|IEP  go_process removal of superoxide radicals|GO:0019430|9765550|IC  go_process response to copper ion|GO:0046688|15772282|IEP  go_function superoxide dismutase activity|GO:0004784|9765550|IDA  product CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2); superoxide dismutase  note COPPER/ZINC SUPEROXIDE DISMUTASE 2 (CSD2); FUNCTIONS IN: superoxide dismutase activity; INVOLVED IN: in 6 processes; LOCATED IN: thylakoid, apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Superoxide dismutase, copper/zinc, binding site (InterPro:IPR018152), Superoxide dismutase, copper/zinc binding (InterPro:IPR001424); BEST Arabidopsis thaliana protein match is: CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1); superoxide dismutase (TAIR:AT1G08830.2); Has 3383 Blast hits to 3372 proteins in 1008 species: Archae - 6; Bacteria - 1194; Metazoa - 972; Fungi - 212; Plants - 552; Viruses - 130; Other Eukaryotes - 317 (source: NCBI BLink).  protein_id AT2G28190.1p  transcript_id AT2G28190.1  protein_id AT2G28190.1p  transcript_id AT2G28190.1  
At2g28200	chr2:012024321	0.0	W/12024321-12025181	AT2G28200.1  CDS  gene_syn T3B23.13, T3B23_13  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product nucleic acid binding / transcription factor/ zinc ion binding  note nucleic acid binding / transcription factor/ zinc ion binding; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT5G04390.1); Has 1266 Blast hits to 1178 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 708; Fungi - 8; Plants - 532; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT2G28200.1p  transcript_id AT2G28200.1  protein_id AT2G28200.1p  transcript_id AT2G28200.1  
At2g28210	chr2:012029997	0.0	W/12029997-12030230,12030315-12030424,12031923-12032025,12032132-12032338	AT2G28210.1  CDS  gene_syn ALPHA CARBONIC ANHYDRASE 2, ATACA2, T3B23.12, T3B23_12  gene ATACA2  go_function carbonate dehydratase activity|GO:0004089||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process one-carbon compound metabolic process|GO:0006730||ISS  go_process response to carbon dioxide|GO:0010037|17407539|IEP  go_function carbonate dehydratase activity|GO:0004089||ISS  go_function zinc ion binding|GO:0008270||ISS  product ATACA2 (ALPHA CARBONIC ANHYDRASE 2); carbonate dehydratase/ zinc ion binding  note ALPHA CARBONIC ANHYDRASE 2 (ATACA2); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: response to carbon dioxide, one-carbon compound metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, alpha-class, catalytic domain (InterPro:IPR001148), Carbonic anhydrase, CAH1-like (InterPro:IPR018340), Carbonic anhydrase, alpha-class, conserved site (InterPro:IPR018338); BEST Arabidopsis thaliana protein match is: ACA7 (ALPHA CARBONIC ANHYDRASE 7); carbonate dehydratase/ zinc ion binding (TAIR:AT1G08080.1); Has 2405 Blast hits to 2391 proteins in 304 species: Archae - 0; Bacteria - 340; Metazoa - 1736; Fungi - 52; Plants - 162; Viruses - 2; Other Eukaryotes - 113 (source: NCBI BLink).  protein_id AT2G28210.1p  transcript_id AT2G28210.1  protein_id AT2G28210.1p  transcript_id AT2G28210.1  
At2g28220	chr2:012033953	0.0	W/12033953-12035164,12036469-12037527	AT2G28220.1  CDS  gene_syn T3B23.11, T3B23_11  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT2G28030.1); Has 3813 Blast hits to 2254 proteins in 212 species: Archae - 0; Bacteria - 0; Metazoa - 1013; Fungi - 622; Plants - 1982; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink).  protein_id AT2G28220.1p  transcript_id AT2G28220.1  protein_id AT2G28220.1p  transcript_id AT2G28220.1  
At2g28230	chr2:012038996	0.0	C/12038996-12039009,12038484-12038895,12037855-12038088	AT2G28230.1  CDS  gene_syn T3B23.10, T3B23_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TATA-binding related factor (InterPro:IPR013921); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09070.1); Has 43 Blast hits to 43 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 22; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G28230.1p  transcript_id AT2G28230.1  protein_id AT2G28230.1p  transcript_id AT2G28230.1  
At2g28240	chr2:012039649	0.0	W/12039649-12039987,12040076-12040172,12040267-12040484,12040569-12040782,12040856-12041970	AT2G28240.1  CDS  gene_syn T3B23.9, T3B23_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: MOM (MORPHEUS MOLECULE) (TAIR:AT1G08060.2); Has 38164 Blast hits to 23774 proteins in 1154 species: Archae - 58; Bacteria - 5289; Metazoa - 16448; Fungi - 7972; Plants - 2490; Viruses - 973; Other Eukaryotes - 4934 (source: NCBI BLink).  protein_id AT2G28240.1p  transcript_id AT2G28240.1  protein_id AT2G28240.1p  transcript_id AT2G28240.1  
At2g28250	chr2:012044004	0.0	W/12044004-12044073,12044148-12044240,12044321-12044422,12044501-12044755,12044845-12045089,12045164-12045460,12045535-12045777,12045867-12046100,12046181-12046339	AT2G28250.1  CDS  gene_syn NCRK, T3B23.8, T3B23_8  gene NCRK  go_component endosome|GO:0005768|18088316|IDA  go_component endomembrane system|GO:0012505|18088316|IDA  go_process xylem histogenesis|GO:0010089|18088316|IDA  go_function kinase activity|GO:0016301||ISS  product NCRK; kinase  note NCRK; FUNCTIONS IN: kinase activity; INVOLVED IN: xylem histogenesis; LOCATED IN: endosome, endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G38560.1); Has 77327 Blast hits to 76507 proteins in 1963 species: Archae - 52; Bacteria - 7226; Metazoa - 33618; Fungi - 5968; Plants - 17636; Viruses - 314; Other Eukaryotes - 12513 (source: NCBI BLink).  protein_id AT2G28250.1p  transcript_id AT2G28250.1  protein_id AT2G28250.1p  transcript_id AT2G28250.1  
At2g28250	chr2:012044004	0.0	W/12044004-12044073,12044148-12044240,12044321-12044422,12044501-12044755,12044845-12045089,12045164-12045460,12045535-12045777,12045867-12046100,12046181-12046339	AT2G28250.2  CDS  gene_syn NCRK, T3B23.8, T3B23_8  gene NCRK  go_component endosome|GO:0005768|18088316|IDA  go_component endomembrane system|GO:0012505|18088316|IDA  go_process xylem histogenesis|GO:0010089|18088316|IDA  go_function kinase activity|GO:0016301||ISS  product NCRK; kinase  note NCRK; FUNCTIONS IN: kinase activity; INVOLVED IN: xylem histogenesis; LOCATED IN: endosome, endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G38560.1); Has 77327 Blast hits to 76507 proteins in 1963 species: Archae - 52; Bacteria - 7226; Metazoa - 33618; Fungi - 5968; Plants - 17636; Viruses - 314; Other Eukaryotes - 12513 (source: NCBI BLink).  protein_id AT2G28250.2p  transcript_id AT2G28250.2  protein_id AT2G28250.2p  transcript_id AT2G28250.2  
At2g28260	chr2:012049989	0.0	W/12049989-12050017,12050095-12050614,12050694-12050906,12051028-12051320,12051392-12051740,12051821-12052453	AT2G28260.1  CDS  gene_syn ATCNGC15, CNGC15, CYCLIC NUCLEOTIDE-GATED CHANNEL 15, T3B23.7, T3B23_7  gene ATCNGC15  function member of Cyclic nucleotide gated channel family  go_component membrane|GO:0016020||IEA  go_process ion transport|GO:0006811||IEA  go_process potassium ion transport|GO:0006813||IEA  go_function cation channel activity|GO:0005261||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function cyclic nucleotide binding|GO:0030551||ISS  product ATCNGC15; calmodulin binding / cation channel/ cyclic nucleotide binding  note ATCNGC15; FUNCTIONS IN: cyclic nucleotide binding, calmodulin binding, cation channel activity; INVOLVED IN: potassium ion transport, ion transport; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding, conserved site (InterPro:IPR018488), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: ATCNGC14; calmodulin binding / cyclic nucleotide binding / ion channel (TAIR:AT2G24610.1); Has 2423 Blast hits to 2374 proteins in 228 species: Archae - 0; Bacteria - 99; Metazoa - 1230; Fungi - 12; Plants - 619; Viruses - 0; Other Eukaryotes - 463 (source: NCBI BLink).  protein_id AT2G28260.1p  transcript_id AT2G28260.1  protein_id AT2G28260.1p  transcript_id AT2G28260.1  
At2g28270	chr2:012053652	0.0	W/12053652-12054398	AT2G28270.1  CDS  gene_syn T3B23.6, T3B23_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT2G44380.1); Has 1610 Blast hits to 531 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1608; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G28270.1p  transcript_id AT2G28270.1  protein_id AT2G28270.1p  transcript_id AT2G28270.1  
At2g28280	chr2:012054736	0.0	C/12054736-12056452	AT2G28280.1  pseudogenic_transcript  pseudo  gene_syn T3B23.5  note pseudogene, hypothetical protein  
At2g28290	chr2:012056771	0.0	W/12056771-12056878,12056973-12057034,12057283-12057398,12057496-12057885,12057987-12058042,12058560-12058720,12058808-12058872,12058955-12059347,12059466-12059623,12060302-12060399,12060716-12060901,12061017-12061197,12061285-12061476,12061565-12061608,12061827-12061883,12061971-12062067,12062180-12062352,12062431-12062644,12062771-12062896,12062994-12063083,12063205-12063321,12063401-12063481,12063583-12063690,12064102-12064271,12064452-12064530,12064620-12064694,12065000-12065097,12065177-12065284,12065656-12065713,12065792-12066022,12066111-12067080,12067204-12067398,12067483-12072240,12072334-12072950	AT2G28290.3  CDS  gene_syn CHR3, CHROMATIN REMODELING COMPLEX SUBUNIT R, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, SPLAYED, SYD  gene SYD  function Encodes a SWI2/SNF2-like protein in the SNF2 subclass. Homozygous plants with null mutations exhibit premature termination of the meristem and carpelloid structures from the inflorescence meristem. Co-activator of floral homeotic gene expression. Acts with LFY to regulate shoot apical meristem identity. Required for meristem maintenance. Regulates flowering under a non-inductive photoperiod. It promotes the expression of CUC2 during cotyledon boundary formation. Affects reproductive shoot apical meristem function by regulating the expression of WUS. In CHiP experiments SYD binds to WUS promoter. Present as two forms in the nucleus, full-length and truncated, with the latter apparently lacking the C-terminal domain. The ratio of the two forms differs in juvenile and in adult tissues. The C-terminal domain is not required for activity.  go_component nucleus|GO:0005634|16640604|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component chromatin remodeling complex|GO:0016585||ISS  go_process response to wounding|GO:0009611|17953483|IEP  go_process flower development|GO:0009908|11818058|IMP  go_process organ boundary specification between lateral organs and the meristem|GO:0010199|16854978|IGI  go_process regulation of gene expression, epigenetic|GO:0040029|17293567|IMP  go_process ATP-dependent chromatin remodeling|GO:0043044|16854978|NAS  go_function chromatin binding|GO:0003682|15833920|IPI  go_function ATPase activity|GO:0016887|11818058|ISS  product SYD (SPLAYED); ATPase/ chromatin binding  note SPLAYED (SYD); FUNCTIONS IN: chromatin binding, ATPase activity; INVOLVED IN: ATP-dependent chromatin remodeling, flower development, organ boundary specification between lateral organs and the meristem, regulation of gene expression, epigenetic, response to wounding; LOCATED IN: cytosol, nucleus, chromatin remodeling complex; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), Helicase/SANT-associated, DNA binding (InterPro:IPR014012), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: ATCHR12; ATP binding / DNA binding / helicase/ nucleic acid binding (TAIR:AT3G06010.1); Has 30021 Blast hits to 22155 proteins in 1470 species: Archae - 184; Bacteria - 4767; Metazoa - 10649; Fungi - 4900; Plants - 1198; Viruses - 228; Other Eukaryotes - 8095 (source: NCBI BLink).  protein_id AT2G28290.3p  transcript_id AT2G28290.3  protein_id AT2G28290.3p  transcript_id AT2G28290.3  
At2g28290	chr2:012056771	0.0	W/12056771-12056878,12056973-12057034,12057283-12057398,12057496-12057885,12057987-12058042,12058560-12058720,12058808-12058872,12058955-12059347,12059466-12059623,12060302-12060399,12060716-12060901,12061017-12061197,12061285-12061476,12061565-12061608,12061827-12061883,12061971-12062067,12062180-12062352,12062431-12062644,12062771-12062896,12062994-12063083,12063205-12063321,12063401-12063481,12063583-12063690,12064102-12064271,12064452-12064530,12064620-12064694,12065000-12065097,12065177-12065284,12065656-12065713,12065792-12066022,12066111-12067080,12067204-12067398,12067483-12072240,12072376-12072950	AT2G28290.2  CDS  gene_syn CHR3, CHROMATIN REMODELING COMPLEX SUBUNIT R, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, SPLAYED, SYD  gene SYD  function Encodes a SWI2/SNF2-like protein in the SNF2 subclass. Homozygous plants with null mutations exhibit premature termination of the meristem and carpelloid structures from the inflorescence meristem. Co-activator of floral homeotic gene expression. Acts with LFY to regulate shoot apical meristem identity. Required for meristem maintenance. Regulates flowering under a non-inductive photoperiod. It promotes the expression of CUC2 during cotyledon boundary formation. Affects reproductive shoot apical meristem function by regulating the expression of WUS. In CHiP experiments SYD binds to WUS promoter. Present as two forms in the nucleus, full-length and truncated, with the latter apparently lacking the C-terminal domain. The ratio of the two forms differs in juvenile and in adult tissues. The C-terminal domain is not required for activity.  go_component nucleus|GO:0005634|16640604|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component chromatin remodeling complex|GO:0016585||ISS  go_process response to wounding|GO:0009611|17953483|IEP  go_process flower development|GO:0009908|11818058|IMP  go_process organ boundary specification between lateral organs and the meristem|GO:0010199|16854978|IGI  go_process regulation of gene expression, epigenetic|GO:0040029|17293567|IMP  go_process ATP-dependent chromatin remodeling|GO:0043044|16854978|NAS  go_function chromatin binding|GO:0003682|15833920|IPI  go_function ATPase activity|GO:0016887|11818058|ISS  product SYD (SPLAYED); ATPase/ chromatin binding  note SPLAYED (SYD); FUNCTIONS IN: chromatin binding, ATPase activity; INVOLVED IN: ATP-dependent chromatin remodeling, flower development, organ boundary specification between lateral organs and the meristem, regulation of gene expression, epigenetic, response to wounding; LOCATED IN: cytosol, nucleus, chromatin remodeling complex; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), Helicase/SANT-associated, DNA binding (InterPro:IPR014012), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: ATCHR12; ATP binding / DNA binding / helicase/ nucleic acid binding (TAIR:AT3G06010.1); Has 29406 Blast hits to 21966 proteins in 1463 species: Archae - 174; Bacteria - 4704; Metazoa - 10444; Fungi - 4828; Plants - 1183; Viruses - 225; Other Eukaryotes - 7848 (source: NCBI BLink).  protein_id AT2G28290.2p  transcript_id AT2G28290.2  protein_id AT2G28290.2p  transcript_id AT2G28290.2  
At2g28290	chr2:012056771	0.0	W/12056771-12056878,12056973-12057034,12057283-12057398,12057496-12057885,12057987-12058042,12058560-12058720,12058808-12058872,12058955-12059347,12059466-12059623,12060302-12060399,12060716-12060901,12061017-12061197,12061285-12061476,12061565-12061608,12061827-12061883,12061971-12062067,12062180-12062352,12062431-12062644,12062771-12062896,12062994-12063083,12063205-12063321,12063401-12063481,12063583-12063690,12064102-12064271,12064452-12064530,12064620-12064694,12065000-12065097,12065177-12065284,12065656-12065713,12065792-12066022,12066111-12067080,12067204-12067398,12067483-12072950	AT2G28290.1  CDS  gene_syn CHR3, CHROMATIN REMODELING COMPLEX SUBUNIT R, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, SPLAYED, SYD  gene SYD  function Encodes a SWI2/SNF2-like protein in the SNF2 subclass. Homozygous plants with null mutations exhibit premature termination of the meristem and carpelloid structures from the inflorescence meristem. Co-activator of floral homeotic gene expression. Acts with LFY to regulate shoot apical meristem identity. Required for meristem maintenance. Regulates flowering under a non-inductive photoperiod. It promotes the expression of CUC2 during cotyledon boundary formation. Affects reproductive shoot apical meristem function by regulating the expression of WUS. In CHiP experiments SYD binds to WUS promoter. Present as two forms in the nucleus, full-length and truncated, with the latter apparently lacking the C-terminal domain. The ratio of the two forms differs in juvenile and in adult tissues. The C-terminal domain is not required for activity.  go_component nucleus|GO:0005634|16640604|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component chromatin remodeling complex|GO:0016585||ISS  go_process response to wounding|GO:0009611|17953483|IEP  go_process flower development|GO:0009908|11818058|IMP  go_process organ boundary specification between lateral organs and the meristem|GO:0010199|16854978|IGI  go_process regulation of gene expression, epigenetic|GO:0040029|17293567|IMP  go_process ATP-dependent chromatin remodeling|GO:0043044|16854978|NAS  go_function chromatin binding|GO:0003682|15833920|IPI  go_function ATPase activity|GO:0016887|11818058|ISS  product SYD (SPLAYED); ATPase/ chromatin binding  note SPLAYED (SYD); FUNCTIONS IN: chromatin binding, ATPase activity; INVOLVED IN: ATP-dependent chromatin remodeling, flower development, organ boundary specification between lateral organs and the meristem, regulation of gene expression, epigenetic, response to wounding; LOCATED IN: cytosol, nucleus, chromatin remodeling complex; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), Helicase/SANT-associated, DNA binding (InterPro:IPR014012), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: ATCHR12; ATP binding / DNA binding / helicase/ nucleic acid binding (TAIR:AT3G06010.1); Has 29280 Blast hits to 21832 proteins in 1461 species: Archae - 178; Bacteria - 4689; Metazoa - 10383; Fungi - 4781; Plants - 1192; Viruses - 226; Other Eukaryotes - 7831 (source: NCBI BLink).  protein_id AT2G28290.1p  transcript_id AT2G28290.1  protein_id AT2G28290.1p  transcript_id AT2G28290.1  
At2g28305	chr2:012081186	0.0	W/12081186-12081290,12082315-12082412,12082559-12082589,12083285-12083384,12083488-12083558,12083986-12084129,12084215-12084307	AT2G28305.1  CDS  gene_syn T1B3.18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37210.1); Has 3226 Blast hits to 3224 proteins in 786 species: Archae - 10; Bacteria - 1869; Metazoa - 10; Fungi - 79; Plants - 196; Viruses - 0; Other Eukaryotes - 1062 (source: NCBI BLink).  protein_id AT2G28305.1p  transcript_id AT2G28305.1  protein_id AT2G28305.1p  transcript_id AT2G28305.1  
At2g28310	chr2:012085773	0.0	W/12085773-12085792,12085882-12085990,12086073-12086165,12086275-12086379,12086477-12086560,12086654-12086769,12086851-12086952,12087030-12087143,12087234-12087290,12087385-12087451,12087542-12087595,12087685-12087888	AT2G28310.1  CDS  gene_syn T1B3.17  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G08040.2); Has 193 Blast hits to 192 proteins in 15 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 179; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT2G28310.1p  transcript_id AT2G28310.1  protein_id AT2G28310.1p  transcript_id AT2G28310.1  
At2g28310	chr2:012085773	0.0	W/12085773-12085792,12085882-12085990,12086073-12086165,12086275-12086379,12086477-12086560,12086654-12086769,12086851-12086952,12087030-12087143,12087234-12087290,12087385-12087451,12087542-12087595,12087685-12087888	AT2G28310.2  CDS  gene_syn T1B3.17  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G08040.2); Has 193 Blast hits to 192 proteins in 15 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 179; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT2G28310.2p  transcript_id AT2G28310.2  protein_id AT2G28310.2p  transcript_id AT2G28310.2  
At2g28310	chr2:012085773	0.0	W/12085773-12085792,12085882-12085990,12086073-12086165,12086275-12086379,12086477-12086560,12086654-12086769,12086851-12086952,12087030-12087143,12087234-12087290,12087385-12087451,12087542-12087595,12087685-12087888	AT2G28310.3  CDS  gene_syn T1B3.17  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G08040.2).  protein_id AT2G28310.3p  transcript_id AT2G28310.3  protein_id AT2G28310.3p  transcript_id AT2G28310.3  
At2g28315	chr2:012088896	0.0	W/12088896-12089016,12089133-12089317,12089398-12089465,12089554-12089686,12089770-12089931,12090126-12090395,12090481-12090570	AT2G28315.1  CDS  go_component membrane|GO:0016020|11152613|ISS  product unknown protein  note LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: transporter-related (TAIR:AT1G06890.2); Has 1852 Blast hits to 1847 proteins in 207 species: Archae - 0; Bacteria - 58; Metazoa - 582; Fungi - 250; Plants - 685; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink).  protein_id AT2G28315.1p  transcript_id AT2G28315.1  protein_id AT2G28315.1p  transcript_id AT2G28315.1  
At2g28320	chr2:012095161	0.0	W/12095161-12095322,12095426-12095500,12095584-12095637,12095733-12095798,12095877-12095935,12096087-12096217,12096291-12096337,12096432-12096529,12096645-12096740,12096811-12096875,12096969-12097040,12097280-12097426,12097508-12097800,12097873-12097936,12098052-12098248,12098336-12098437,12098522-12098572,12098663-12098806,12098895-12098990,12099121-12099222,12099332-12099424	AT2G28320.1  CDS  gene_syn T1B3.16, T1B3_16  go_component plasma membrane|GO:0005886|17317660|IDA  go_process signal transduction|GO:0007165|15358268|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein  note pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769), Lipid-binding START (InterPro:IPR002913), Pleckstrin homology-type (InterPro:IPR011993), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein (TAIR:AT3G54800.2); Has 373 Blast hits to 365 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 0; Plants - 191; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT2G28320.1p  transcript_id AT2G28320.1  protein_id AT2G28320.1p  transcript_id AT2G28320.1  
At2g28330	chr2:012100159	0.0	C/12100159-12100623	AT2G28330.1  CDS  gene_syn T1B3.15, T1B3_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G08035.1); Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G28330.1p  transcript_id AT2G28330.1  protein_id AT2G28330.1p  transcript_id AT2G28330.1  
At2g28340	chr2:012103672	0.0	W/12103672-12103917,12105121-12105192,12105543-12106172	AT2G28340.1  CDS  gene_syn T1B3.14, T1B3_14  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product zinc finger (GATA type) family protein  note zinc finger (GATA type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: zinc finger (GATA type) family protein (TAIR:AT1G08010.2); Has 888 Blast hits to 865 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 400; Plants - 410; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT2G28340.1p  transcript_id AT2G28340.1  protein_id AT2G28340.1p  transcript_id AT2G28340.1  
At2g28350	chr2:012114331	0.0	W/12114331-12115410,12115493-12116346,12116431-12116496,12116584-12116665	AT2G28350.1  CDS  gene_syn ARF10, AUXIN RESPONSE FACTOR 10, T1B3.13, T1B3_13  gene ARF10  function Involved in root cap cell differentiation.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process pattern specification process|GO:0007389|16006581|IDA  go_process auxin mediated signaling pathway|GO:0009734|17672844|IMP  go_process abscisic acid mediated signaling|GO:0009738|17672844|IMP  go_process response to carbohydrate stimulus|GO:0009743|17672844|IMP  go_process fruit development|GO:0010154|17672844|IMP  go_process regulation of anthocyanin biosynthetic process|GO:0031540|17672844|IMP  go_process leaf development|GO:0048366|17672844|IMP  go_process petal development|GO:0048441|17672844|IMP  go_process sepal development|GO:0048442|17672844|IMP  go_process developmental growth|GO:0048589|17672844|IMP  go_process root cap development|GO:0048829|16006581|IGI  go_process root cap development|GO:0048829|16006581|IMP  go_process cell division|GO:0051301|16006581|IGI  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function miRNA binding|GO:0035198|15829600|ISS  product ARF10 (AUXIN RESPONSE FACTOR 10); miRNA binding / transcription factor  note AUXIN RESPONSE FACTOR 10 (ARF10); FUNCTIONS IN: transcription factor activity, miRNA binding; INVOLVED IN: in 13 processes; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: ARF16 (AUXIN RESPONSE FACTOR 16); miRNA binding / transcription factor (TAIR:AT4G30080.1); Has 824 Blast hits to 758 proteins in 45 species: Archae - 0; Bacteria - 2; Metazoa - 34; Fungi - 0; Plants - 783; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT2G28350.1p  transcript_id AT2G28350.1  protein_id AT2G28350.1p  transcript_id AT2G28350.1  
At2g28355	chr2:012119388	0.0	W/12119388-12119451,12119917-12120089	AT2G28355.1  CDS  gene_syn LCR5, Low-molecular-weight cysteine-rich 5  gene LCR5  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||IEA  go_function molecular_function|GO:0003674||ND  product LCR5 (Low-molecular-weight cysteine-rich 5)  note Low-molecular-weight cysteine-rich 5 (LCR5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: LCR14 (Low-molecular-weight cysteine-rich 14) (TAIR:AT2G25344.1); Has 50 Blast hits to 50 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G28355.1p  transcript_id AT2G28355.1  protein_id AT2G28355.1p  transcript_id AT2G28355.1  
At2g28360	chr2:012129841	0.0	C/12129841-12129879,12129487-12129590,12129302-12129388,12129113-12129188,12128942-12129016,12128798-12128851,12128276-12128335,12128068-12128184,12127781-12127875,12127477-12127685,12127034-12127131,12126826-12126929,12126575-12126737,12126315-12126437,12126082-12126164,12125687-12125819,12125565-12125603,12125342-12125412,12124604-12125240	AT2G28360.1  CDS  gene_syn T1B3.12, T1B3_12  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SIT4 phosphatase-associated protein (InterPro:IPR007587); BEST Arabidopsis thaliana protein match is: SIT4 phosphatase-associated family protein (TAIR:AT1G07990.1); Has 1431 Blast hits to 1107 proteins in 182 species: Archae - 2; Bacteria - 108; Metazoa - 552; Fungi - 305; Plants - 89; Viruses - 18; Other Eukaryotes - 357 (source: NCBI BLink).  protein_id AT2G28360.1p  transcript_id AT2G28360.1  protein_id AT2G28360.1p  transcript_id AT2G28360.1  
At2g28370	chr2:012132092	0.0	W/12132092-12132306,12133033-12133165,12133256-12133447	AT2G28370.1  CDS  gene_syn T1B3.11, T1B3_11  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702); BEST Arabidopsis thaliana protein match is: integral membrane protein, putative (TAIR:AT2G37200.1); Has 100 Blast hits to 100 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G28370.1p  transcript_id AT2G28370.1  protein_id AT2G28370.1p  transcript_id AT2G28370.1  
At2g28380	chr2:012135670	0.0	C/12135670-12135915,12135053-12135272,12134098-12134936	AT2G28380.1  CDS  gene_syn DRB2, DSRNA-BINDING PROTEIN 2, T1B3.10, T1B3_10  gene DRB2  function Encodes a cytoplasmic dsRNA-binding protein.  go_component cytoplasm|GO:0005737|15821876|IDA  go_process biological_process|GO:0008150||ND  go_function double-stranded RNA binding|GO:0003725|15821876|IDA  go_function double-stranded RNA binding|GO:0003725||ISS  product DRB2 (DSRNA-BINDING PROTEIN 2); double-stranded RNA binding  note DSRNA-BINDING PROTEIN 2 (DRB2); FUNCTIONS IN: double-stranded RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: DRB3 (dsRNA-binding protein 3); RNA binding / double-stranded RNA binding (TAIR:AT3G26932.2); Has 637 Blast hits to 566 proteins in 167 species: Archae - 2; Bacteria - 161; Metazoa - 159; Fungi - 61; Plants - 176; Viruses - 8; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT2G28380.1p  transcript_id AT2G28380.1  protein_id AT2G28380.1p  transcript_id AT2G28380.1  
At2g28390	chr2:012142869	0.0	C/12142869-12143375,12142548-12142627,12142354-12142425,12142224-12142263,12141939-12142040,12141721-12141842,12141222-12141354,12141046-12141137,12140886-12140967,12140741-12140805,12140363-12140638,12140190-12140281,12140035-12140099,12139836-12139931	AT2G28390.1  CDS  gene_syn T1B3.9, T1B3_9  go_component chloroplast|GO:0009507||IEA  product SAND family protein  note SAND family protein; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar fusion protein MON1 (InterPro:IPR004353); Has 646 Blast hits to 487 proteins in 169 species: Archae - 4; Bacteria - 33; Metazoa - 275; Fungi - 161; Plants - 29; Viruses - 2; Other Eukaryotes - 142 (source: NCBI BLink).  protein_id AT2G28390.1p  transcript_id AT2G28390.1  protein_id AT2G28390.1p  transcript_id AT2G28390.1  
At2g28400	chr2:012148513	0.0	C/12148513-12149001	AT2G28400.1  CDS  gene_syn T1B3.8, T1B3_8  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF584 (InterPro:IPR007608); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G60680.1); Has 187 Blast hits to 187 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 187; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G28400.1p  transcript_id AT2G28400.1  protein_id AT2G28400.1p  transcript_id AT2G28400.1  
At2g28401	chr2:012150380	0.0	W/12150380-12150502	AT2G28401.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G28401.1p  transcript_id AT2G28401.1  protein_id AT2G28401.1p  transcript_id AT2G28401.1  
At2g28405	chr2:012154029	0.0	C/12154029-12154092,12153294-12153481	AT2G28405.1  CDS  gene_syn LCR32, Low-molecular-weight cysteine-rich 32  gene LCR32  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR32 (Low-molecular-weight cysteine-rich 32)  note Low-molecular-weight cysteine-rich 32 (LCR32); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); BEST Arabidopsis thaliana protein match is: LCR4 (Low-molecular-weight cysteine-rich 4) (TAIR:AT3G25265.1); Has 20 Blast hits to 20 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G28405.1p  transcript_id AT2G28405.1  protein_id AT2G28405.1p  transcript_id AT2G28405.1  
At2g28410	chr2:012156202	0.0	W/12156202-12156549	AT2G28410.1  CDS  gene_syn T1B3.7, T1B3_7  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G60650.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G28410.1p  transcript_id AT2G28410.1  protein_id AT2G28410.1p  transcript_id AT2G28410.1  
At2g28420	chr2:012157946	0.0	W/12157946-12158500	AT2G28420.1  CDS  gene_syn T1B3.6, T1B3_6  go_component cellular_component|GO:0005575||ND  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function lactoylglutathione lyase activity|GO:0004462||ISS  product lactoylglutathione lyase family protein / glyoxalase I family protein  note lactoylglutathione lyase family protein / glyoxalase I family protein; FUNCTIONS IN: lactoylglutathione lyase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: lactoylglutathione lyase family protein / glyoxalase I family protein (TAIR:AT1G80160.1); Has 784 Blast hits to 784 proteins in 236 species: Archae - 2; Bacteria - 385; Metazoa - 90; Fungi - 6; Plants - 128; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).  protein_id AT2G28420.1p  transcript_id AT2G28420.1  protein_id AT2G28420.1p  transcript_id AT2G28420.1  
At2g28426	chr2:012159276	0.0	C/12159276-12159407	AT2G28426.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G28426.1p  transcript_id AT2G28426.1  protein_id AT2G28426.1p  transcript_id AT2G28426.1  
At2g28430	chr2:012160367	0.0	C/12160367-12160387,12160163-12160282,12159736-12159852	AT2G28430.1  CDS  gene_syn T1B3.5, T1B3_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G28430.1p  transcript_id AT2G28430.1  protein_id AT2G28430.1p  transcript_id AT2G28430.1  
At2g28440	chr2:012161226	0.0	W/12161226-12162032	AT2G28440.1  CDS  gene_syn T1B3.4, T1B3_4  go_component endomembrane system|GO:0012505||IEA  product proline-rich family protein  note proline-rich family protein; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G45230.1); Has 152727 Blast hits to 58590 proteins in 1927 species: Archae - 265; Bacteria - 39950; Metazoa - 52235; Fungi - 20611; Plants - 11675; Viruses - 3371; Other Eukaryotes - 24620 (source: NCBI BLink).  protein_id AT2G28440.1p  transcript_id AT2G28440.1  protein_id AT2G28440.1p  transcript_id AT2G28440.1  
At2g28450	chr2:012165183	0.0	C/12165183-12165761,12165020-12165112,12164750-12164941,12164591-12164663,12164348-12164480,12164118-12164271,12163938-12164021,12163726-12163848,12163434-12163610,12163218-12163352,12162954-12163049,12162523-12162866,12162180-12162426	AT2G28450.1  CDS  gene_syn T1B3.3, T1B3_3  go_process RNA processing|GO:0006396||IEA  go_process methanol oxidation|GO:0015946||IEA  go_process acetate biosynthetic process from carbon monoxide|GO:0019415||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_function RNA methyltransferase activity|GO:0008173||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc finger (CCCH-type) family protein  note zinc finger (CCCH-type) family protein; FUNCTIONS IN: methyltransferase activity, zinc ion binding, RNA methyltransferase activity, nucleic acid binding; INVOLVED IN: acetate biosynthetic process from carbon monoxide, methanol oxidation, RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Methyltransferase small (InterPro:IPR007848), (Uracil-5)-methyltransferase (InterPro:IPR010280); BEST Arabidopsis thaliana protein match is: RNA methyltransferase family protein (TAIR:AT3G21300.1); Has 4397 Blast hits to 3845 proteins in 1016 species: Archae - 74; Bacteria - 3383; Metazoa - 309; Fungi - 76; Plants - 54; Viruses - 3; Other Eukaryotes - 498 (source: NCBI BLink).  protein_id AT2G28450.1p  transcript_id AT2G28450.1  protein_id AT2G28450.1p  transcript_id AT2G28450.1  
At2g28460	chr2:012166655	0.0	W/12166655-12168817	AT2G28460.1  CDS  gene_syn T1B3.1  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: MEE53 (maternal effect embryo arrest 53); protein binding / zinc ion binding (TAIR:AT4G10560.1); Has 1195 Blast hits to 489 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1192; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G28460.1p  transcript_id AT2G28460.1  protein_id AT2G28460.1p  transcript_id AT2G28460.1  
At2g28470	chr2:012172982	0.0	C/12172982-12173164,12172813-12172908,12172610-12172722,12172441-12172507,12172266-12172358,12172034-12172177,12171839-12171927,12171663-12171768,12171472-12171559,12171272-12171390,12171031-12171195,12170750-12170952,12170533-12170642,12170324-12170424,12170129-12170242,12169959-12170060,12169663-12169874,12169246-12169591,12169047-12169154	AT2G28470.1  CDS  gene_syn BGAL8, T17D12.3, T17D12_3, beta-galactosidase 8  gene BGAL8  function putative beta-galactosidase (BGAL8 gene)  go_component cell wall|GO:0005618|15593128|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  go_function sugar binding|GO:0005529||IEA  go_function cation binding|GO:0043169||IEA  go_function beta-galactosidase activity|GO:0004565||ISS  product BGAL8 (beta-galactosidase 8); beta-galactosidase/ catalytic/ cation binding / sugar binding  note beta-galactosidase 8 (BGAL8); FUNCTIONS IN: cation binding, sugar binding, beta-galactosidase activity, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: BGAL1 (Beta galactosidase 1); beta-galactosidase/ catalytic/ cation binding / heme binding / peroxidase/ sugar binding (TAIR:AT3G13750.1); Has 1692 Blast hits to 1462 proteins in 260 species: Archae - 11; Bacteria - 399; Metazoa - 702; Fungi - 117; Plants - 387; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT2G28470.1p  transcript_id AT2G28470.1  protein_id AT2G28470.1p  transcript_id AT2G28470.1  
At2g28480	chr2:012177952	0.0	C/12177952-12178031,12177545-12177866,12177054-12177455,12176642-12176956	AT2G28480.1  CDS  gene_syn T17D12.4, T17D12_4  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product RNA binding  note RNA binding; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: group II intron splicing factor CRS1-related (TAIR:AT4G13070.1); Has 212 Blast hits to 192 proteins in 26 species: Archae - 0; Bacteria - 3; Metazoa - 27; Fungi - 0; Plants - 169; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT2G28480.1p  transcript_id AT2G28480.1  protein_id AT2G28480.1p  transcript_id AT2G28480.1  
At2g28490	chr2:012180548	0.0	C/12180548-12180983,12180280-12180461,12180133-12180207,12179481-12179903,12178812-12179231	AT2G28490.1  CDS  gene_syn T17D12.5, T17D12_5  go_component endomembrane system|GO:0012505||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process biological_process|GO:0008150||ND  go_function nutrient reservoir activity|GO:0045735||ISS  product cupin family protein  note cupin family protein; FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: seed; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cupin family protein (TAIR:AT2G18540.1); Has 61125 Blast hits to 15032 proteins in 1189 species: Archae - 45; Bacteria - 24850; Metazoa - 18383; Fungi - 2919; Plants - 8379; Viruses - 754; Other Eukaryotes - 5795 (source: NCBI BLink).  protein_id AT2G28490.1p  transcript_id AT2G28490.1  protein_id AT2G28490.1p  transcript_id AT2G28490.1  
At2g28500	chr2:012187808	0.0	C/12187808-12188110,12186603-12186998	AT2G28500.1  CDS  gene_syn LBD11, LOB DOMAIN-CONTAINING PROTEIN 11, T17D12.6, T17D12_6  gene LBD11  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product LBD11 (LOB DOMAIN-CONTAINING PROTEIN 11)  note LOB DOMAIN-CONTAINING PROTEIN 11 (LBD11); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD1 (LOB DOMAIN-CONTAINING PROTEIN 1) (TAIR:AT1G07900.1); Has 751 Blast hits to 732 proteins in 77 species: Archae - 8; Bacteria - 65; Metazoa - 22; Fungi - 2; Plants - 610; Viruses - 10; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT2G28500.1p  transcript_id AT2G28500.1  protein_id AT2G28500.1p  transcript_id AT2G28500.1  
At2g28507	chr2:012196406	0.0	W/12196406-12196552	AT2G28507.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G28507.1p  transcript_id AT2G28507.1  protein_id AT2G28507.1p  transcript_id AT2G28507.1  
At2g28510	chr2:012200613	0.0	C/12200613-12200627,12199383-12200234	AT2G28510.1  CDS  gene_syn T17D12.7, T17D12_7  go_component nucleolus|GO:0005730|15496452|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product Dof-type zinc finger domain-containing protein  note Dof-type zinc finger domain-containing protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT5G60200.1); Has 1115 Blast hits to 1027 proteins in 57 species: Archae - 0; Bacteria - 1; Metazoa - 36; Fungi - 8; Plants - 617; Viruses - 0; Other Eukaryotes - 453 (source: NCBI BLink).  protein_id AT2G28510.1p  transcript_id AT2G28510.1  protein_id AT2G28510.1p  transcript_id AT2G28510.1  
At2g28520	chr2:012210026	0.0	W/12210026-12210169,12210500-12210544,12211177-12211299,12211434-12211541,12211685-12211798,12211887-12212060,12212143-12212280,12212493-12212600,12212719-12212826,12212909-12213057,12213318-12213471,12213892-12214052,12214163-12214369,12214466-12214649,12214747-12214830,12214913-12215115,12215205-12215264,12215343-12215532	AT2G28520.1  CDS  gene_syn T17D12.8, T17D12_8, VACUOLAR PROTON ATPASE A 1, VHA-A1  gene VHA-A1  function Vacuolar proton ATPase subunit VHA-a isoform 1. Localized in the trans-Golgi network.  go_component vacuole|GO:0005773|15215502|IDA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_component trans-Golgi network transport vesicle membrane|GO:0012510|16461582|IDA  go_function ATPase activity|GO:0016887||ISS  product VHA-A1 (VACUOLAR PROTON ATPASE A 1); ATPase  note VACUOLAR PROTON ATPASE A 1 (VHA-A1); FUNCTIONS IN: ATPase activity; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: trans-Golgi network transport vesicle membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, V0/A0 complex, 116-kDa subunit (InterPro:IPR002490); BEST Arabidopsis thaliana protein match is: VHA-A3 (VACUOLAR PROTON ATPASE A3); ATPase (TAIR:AT4G39080.1); Has 1760 Blast hits to 1477 proteins in 370 species: Archae - 220; Bacteria - 435; Metazoa - 593; Fungi - 131; Plants - 69; Viruses - 0; Other Eukaryotes - 312 (source: NCBI BLink).  protein_id AT2G28520.1p  transcript_id AT2G28520.1  protein_id AT2G28520.1p  transcript_id AT2G28520.1  
At2g28540	chr2:012218652	0.0	W/12218652-12218744,12219240-12219367,12219454-12219604,12219704-12219813,12219996-12220079,12220162-12220210,12220304-12220395,12220701-12220833,12220988-12221067,12221136-12222502,12222895-12223014,12223119-12223333,12223420-12223446	AT2G28540.1  CDS  gene_syn T17D12.10, T17D12_10  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product nucleic acid binding / nucleotide binding / protein binding / zinc ion binding  note nucleic acid binding / nucleotide binding / protein binding / zinc ion binding; FUNCTIONS IN: protein binding, nucleotide binding, zinc ion binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, region 1 (InterPro:IPR003954); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT3G45630.1); Has 737 Blast hits to 521 proteins in 154 species: Archae - 0; Bacteria - 20; Metazoa - 234; Fungi - 103; Plants - 76; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink).  protein_id AT2G28540.1p  transcript_id AT2G28540.1  protein_id AT2G28540.1p  transcript_id AT2G28540.1  
At2g28540	chr2:012218652	0.0	W/12218652-12218744,12219240-12219367,12219454-12219604,12219704-12219813,12219996-12220079,12220162-12220210,12220304-12220395,12220701-12220833,12220988-12221067,12221136-12222502,12222895-12223014,12223119-12223594	AT2G28540.2  CDS  gene_syn T17D12.10, T17D12_10  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product nucleic acid binding / nucleotide binding / protein binding / zinc ion binding  note nucleic acid binding / nucleotide binding / protein binding / zinc ion binding; FUNCTIONS IN: protein binding, nucleotide binding, zinc ion binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT3G45630.1); Has 750 Blast hits to 532 proteins in 154 species: Archae - 0; Bacteria - 20; Metazoa - 236; Fungi - 103; Plants - 76; Viruses - 0; Other Eukaryotes - 315 (source: NCBI BLink).  protein_id AT2G28540.2p  transcript_id AT2G28540.2  protein_id AT2G28540.2p  transcript_id AT2G28540.2  
At2g28550	chr2:012227740	0.0	C/12227740-12228251,12227619-12227644,12227520-12227550,12227348-12227435,12227120-12227265,12226642-12226861,12226444-12226566	AT2G28550.2  CDS  gene_syn RAP2.7, RELATED TO AP2.7, T17D12.11, T17D12_11, TARGET OF EAT1 1, TOE1  gene RAP2.7  go_component nucleus|GO:0005634|10948255|IC  go_process regulation of transcription, DNA-dependent|GO:0006355|8742706|TAS  go_process organ morphogenesis|GO:0009887|9636071|IMP  go_process vegetative to reproductive phase transition|GO:0010228|17890372|IMP  go_function DNA binding|GO:0003677|9192694|TAS  go_function transcription factor activity|GO:0003700|10948255|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9192694|TAS  product RAP2.7 (RELATED TO AP2.7); DNA binding / transcription factor  note RELATED TO AP2.7 (RAP2.7); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: organ morphogenesis, regulation of transcription, DNA-dependent, vegetative to reproductive phase transition; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: TOE2; DNA binding / transcription factor (TAIR:AT5G60120.1); Has 3107 Blast hits to 2890 proteins in 180 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 3042; Viruses - 7; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT2G28550.2p  transcript_id AT2G28550.2  protein_id AT2G28550.2p  transcript_id AT2G28550.2  
At2g28550	chr2:012227740	0.0	C/12227740-12228251,12227619-12227644,12227520-12227550,12227348-12227435,12227120-12227265,12226642-12226861,12226456-12226566,12226168-12226383	AT2G28550.1  CDS  gene_syn RAP2.7, RELATED TO AP2.7, T17D12.11, T17D12_11, TARGET OF EAT1 1, TOE1  gene RAP2.7  go_component nucleus|GO:0005634|10948255|IC  go_process regulation of transcription, DNA-dependent|GO:0006355|8742706|TAS  go_process organ morphogenesis|GO:0009887|9636071|IMP  go_process vegetative to reproductive phase transition|GO:0010228|17890372|IMP  go_function DNA binding|GO:0003677|9192694|TAS  go_function transcription factor activity|GO:0003700|10948255|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9192694|TAS  product RAP2.7 (RELATED TO AP2.7); DNA binding / transcription factor  note RELATED TO AP2.7 (RAP2.7); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: organ morphogenesis, regulation of transcription, DNA-dependent, vegetative to reproductive phase transition; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: TOE2; DNA binding / transcription factor (TAIR:AT5G60120.1); Has 3106 Blast hits to 2890 proteins in 180 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 3041; Viruses - 7; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT2G28550.1p  transcript_id AT2G28550.1  protein_id AT2G28550.1p  transcript_id AT2G28550.1  
At2g28560	chr2:012238812	0.0	C/12238812-12238913,12238574-12238726,12238356-12238459,12238219-12238282,12238062-12238117,12237874-12237954,12237725-12237784,12237533-12237624,12237322-12237441,12237096-12237239,12236876-12236916	AT2G28560.3  CDS  gene_syn ATRAD51B, RAD51B, T17D12.12, T17D12_12  gene RAD51B  function Encodes a protein of the RAD51B family involved in double stranded DNA repair. Homozygous mutant plants show increased sensitivity to mitomycin which induces DS breaks.  go_component cellular_component|GO:0005575||ND  go_process DNA repair|GO:0006281|15686518|IMP  go_function recombinase activity|GO:0000150|15686518|ISS  product RAD51B; recombinase  note RAD51B; FUNCTIONS IN: recombinase activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA repair and recombination, RecA-like (InterPro:IPR016467), Rad51, C-terminal (InterPro:IPR013632), RecA bacterial DNA recombination (InterPro:IPR001553); BEST Arabidopsis thaliana protein match is: ATRAD51C; ATP binding / damaged DNA binding / protein binding / recombinase/ single-stranded DNA binding (TAIR:AT2G45280.1); Has 2018 Blast hits to 2018 proteins in 379 species: Archae - 376; Bacteria - 112; Metazoa - 623; Fungi - 315; Plants - 189; Viruses - 14; Other Eukaryotes - 389 (source: NCBI BLink).  protein_id AT2G28560.3p  transcript_id AT2G28560.3  protein_id AT2G28560.3p  transcript_id AT2G28560.3  
At2g28560	chr2:012238812	0.0	C/12238812-12238913,12238574-12238726,12238356-12238459,12238219-12238282,12238062-12238117,12237874-12237954,12237725-12237784,12237533-12237624,12237438-12237457	AT2G28560.4  CDS  gene_syn ATRAD51B, RAD51B, T17D12.12, T17D12_12  gene RAD51B  function Encodes a protein of the RAD51B family involved in double stranded DNA repair. Homozygous mutant plants show increased sensitivity to mitomycin which induces DS breaks.  go_component cellular_component|GO:0005575||ND  go_process DNA repair|GO:0006281|15686518|IMP  go_function recombinase activity|GO:0000150|15686518|ISS  product RAD51B; recombinase  note RAD51B; FUNCTIONS IN: recombinase activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), RecA bacterial DNA recombination (InterPro:IPR001553); BEST Arabidopsis thaliana protein match is: RAD51D (ARABIDOPSIS HOMOLOG OF RAD51 D); ATP binding / DNA binding / DNA-dependent ATPase (TAIR:AT1G07745.2).  protein_id AT2G28560.4p  transcript_id AT2G28560.4  protein_id AT2G28560.4p  transcript_id AT2G28560.4  
At2g28560	chr2:012239003	0.0	C/12239003-12239086,12238812-12238925,12238574-12238726,12238356-12238459,12238219-12238282,12238062-12238117,12237874-12237954,12237725-12237784,12237533-12237624,12237322-12237441,12237052-12237239	AT2G28560.1  CDS  gene_syn ATRAD51B, RAD51B, T17D12.12, T17D12_12  gene RAD51B  function Encodes a protein of the RAD51B family involved in double stranded DNA repair. Homozygous mutant plants show increased sensitivity to mitomycin which induces DS breaks.  go_component cellular_component|GO:0005575||ND  go_process DNA repair|GO:0006281|15686518|IMP  go_function recombinase activity|GO:0000150|15686518|ISS  product RAD51B; recombinase  note RAD51B; FUNCTIONS IN: recombinase activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA repair and recombination, RecA-like (InterPro:IPR016467), Rad51, C-terminal (InterPro:IPR013632), RecA bacterial DNA recombination (InterPro:IPR001553); BEST Arabidopsis thaliana protein match is: ATRAD51C; ATP binding / damaged DNA binding / protein binding / recombinase/ single-stranded DNA binding (TAIR:AT2G45280.1); Has 2049 Blast hits to 2049 proteins in 384 species: Archae - 374; Bacteria - 126; Metazoa - 625; Fungi - 315; Plants - 189; Viruses - 14; Other Eukaryotes - 406 (source: NCBI BLink).  protein_id AT2G28560.1p  transcript_id AT2G28560.1  protein_id AT2G28560.1p  transcript_id AT2G28560.1  
At2g28560	chr2:012239003	0.0	C/12239003-12239086,12238812-12238925,12238574-12238726,12238356-12238459,12238219-12238282,12238062-12238117,12237874-12237954,12237725-12237784,12237533-12237624,12237322-12237441,12237096-12237239,12236876-12236916	AT2G28560.2  CDS  gene_syn ATRAD51B, RAD51B, T17D12.12, T17D12_12  gene RAD51B  function Encodes a protein of the RAD51B family involved in double stranded DNA repair. Homozygous mutant plants show increased sensitivity to mitomycin which induces DS breaks.  go_component cellular_component|GO:0005575||ND  go_process DNA repair|GO:0006281|15686518|IMP  go_function recombinase activity|GO:0000150|15686518|ISS  product RAD51B; recombinase  note RAD51B; FUNCTIONS IN: recombinase activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA repair and recombination, RecA-like (InterPro:IPR016467), Rad51, C-terminal (InterPro:IPR013632), RecA bacterial DNA recombination (InterPro:IPR001553); BEST Arabidopsis thaliana protein match is: ATRAD51C; ATP binding / damaged DNA binding / protein binding / recombinase/ single-stranded DNA binding (TAIR:AT2G45280.1); Has 2049 Blast hits to 2049 proteins in 384 species: Archae - 374; Bacteria - 126; Metazoa - 625; Fungi - 315; Plants - 189; Viruses - 14; Other Eukaryotes - 406 (source: NCBI BLink).  protein_id AT2G28560.2p  transcript_id AT2G28560.2  protein_id AT2G28560.2p  transcript_id AT2G28560.2  
At2g28570	chr2:012242064	0.0	W/12242064-12242300	AT2G28570.1  CDS  gene_syn T17D12.13, T17D12_13  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: inflorescence meristem, hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G28570.1p  transcript_id AT2G28570.1  protein_id AT2G28570.1p  transcript_id AT2G28570.1  
At2g28580	chr2:012244885	0.0	W/12244885-12244893,12245337-12245390,12246100-12246150,12246499-12246549,12246635-12246927,12247026-12247858,12247951-12248270	AT2G28580.1  CDS  gene_syn T8O18.13, T8O18_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G44930.1); Has 472 Blast hits to 438 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 472; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G28580.1p  transcript_id AT2G28580.1  protein_id AT2G28580.1p  transcript_id AT2G28580.1  
At2g28590	chr2:012249835	0.0	W/12249835-12249964,12250101-12250336,12250429-12250618,12250696-12251087,12251164-12251490	AT2G28590.1  CDS  gene_syn T8O18.12, T8O18_12  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G07870.1); Has 81856 Blast hits to 81005 proteins in 2832 species: Archae - 52; Bacteria - 7428; Metazoa - 35725; Fungi - 6276; Plants - 18269; Viruses - 350; Other Eukaryotes - 13756 (source: NCBI BLink).  protein_id AT2G28590.1p  transcript_id AT2G28590.1  protein_id AT2G28590.1p  transcript_id AT2G28590.1  
At2g28600	chr2:012251845	0.0	W/12251845-12252000,12252137-12252613,12252713-12252801,12252941-12253040,12253667-12253921,12254144-12254292,12254390-12254672	AT2G28600.1  CDS  gene_syn T8O18.11, T8O18_11  go_function nucleic acid binding|GO:0003676||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product ATP binding / ATP-dependent helicase/ nucleic acid binding  note ATP binding / ATP-dependent helicase/ nucleic acid binding; FUNCTIONS IN: nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545); BEST Arabidopsis thaliana protein match is: ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding / protein binding (TAIR:AT5G14610.1); Has 11366 Blast hits to 11366 proteins in 1412 species: Archae - 74; Bacteria - 6031; Metazoa - 1620; Fungi - 1138; Plants - 665; Viruses - 1; Other Eukaryotes - 1837 (source: NCBI BLink).  protein_id AT2G28600.1p  transcript_id AT2G28600.1  protein_id AT2G28600.1p  transcript_id AT2G28600.1  
At2g28605	chr2:012254911	0.0	W/12254911-12255351,12255432-12255689	AT2G28605.1  CDS  gene_syn T8O18.1, T8O18_1  function Encodes a PsbP domain-OEC23 like protein localized in thylakoid (peripheral-lumenal side).  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  product unknown protein  note LOCATED IN: thylakoid, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); Has 85 Blast hits to 85 proteins in 41 species: Archae - 0; Bacteria - 43; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G28605.1p  transcript_id AT2G28605.1  protein_id AT2G28605.1p  transcript_id AT2G28605.1  
At2g28610	chr2:012262115	0.0	W/12262115-12262558,12262996-12263286	AT2G28610.1  CDS  gene_syn PRESSED FLOWER, PRESSED FLOWER 1, PRS, PRS1, T8O18.10, T8O18_10, WOX3, WUSCHEL RELATED HOMEOBOX 3  gene PRS  function Encodes a homeodomain containing protein that regulates lateral axis-dependent development of Arabidopsis flowers and is required for cell proliferation. It is expressed in a restricted number of L1 cells at the lateral regions of flower primordia, floral organ primordia, and young leaf primordia.  go_component nucleus|GO:0005634|11751640|IDA  go_process cell proliferation|GO:0008283|11751640|IMP  go_process flower development|GO:0009908|11751640|IMP  go_process adaxial/abaxial axis specification|GO:0009943|11751640|IMP  go_process centrolateral axis specification|GO:0009947|11751640|IMP  go_process stipule development|GO:0010865|19073779|IMP  go_process regulation of transcription|GO:0045449|11751640|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11751640|TAS  product PRS (PRESSED FLOWER); transcription factor  note PRESSED FLOWER (PRS); FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WOX1 (WUSCHEL related homeobox 1); transcription factor (TAIR:AT3G18010.1); Has 1142 Blast hits to 795 proteins in 119 species: Archae - 0; Bacteria - 35; Metazoa - 298; Fungi - 19; Plants - 393; Viruses - 6; Other Eukaryotes - 391 (source: NCBI BLink).  protein_id AT2G28610.1p  transcript_id AT2G28610.1  protein_id AT2G28610.1p  transcript_id AT2G28610.1  
At2g28620	chr2:012269848	0.0	C/12269848-12270020,12269617-12269746,12269366-12269521,12268797-12269273,12268601-12268698,12268346-12268502,12268207-12268276,12268037-12268113,12267894-12267947,12267705-12267785,12267489-12267600,12267327-12267415,12267077-12267250,12266825-12266986,12266478-12266744,12266096-12266385,12265898-12265999,12265701-12265810,12265167-12265618	AT2G28620.1  CDS  gene_syn T8O18.9, T8O18_9  go_component microtubule associated complex|GO:0005875||IEA  go_component chloroplast|GO:0009507||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product kinesin motor protein-related  note kinesin motor protein-related; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex, chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin motor protein-related (TAIR:AT3G45850.1); Has 38255 Blast hits to 26694 proteins in 1178 species: Archae - 315; Bacteria - 3865; Metazoa - 19131; Fungi - 3066; Plants - 1862; Viruses - 111; Other Eukaryotes - 9905 (source: NCBI BLink).  protein_id AT2G28620.1p  transcript_id AT2G28620.1  protein_id AT2G28620.1p  transcript_id AT2G28620.1  
At2g28625	chr2:012272381	0.0	W/12272381-12272634,12272714-12272756	AT2G28625.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G28625.1p  transcript_id AT2G28625.1  protein_id AT2G28625.1p  transcript_id AT2G28625.1  
At2g28630	chr2:012275719	0.0	C/12275719-12277149	AT2G28630.1  CDS  gene_syn 3-KETOACYL-COA SYNTHASE 12, KCS12, T8O18.8, T8O18_8  gene KCS12  function Encodes KCS12, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).  go_function catalytic activity|GO:0003824||IEA  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component endoplasmic reticulum|GO:0005783|18465198|IDA  go_process response to osmotic stress|GO:0006970|18465198|IEP  go_function acyltransferase activity|GO:0008415||ISS  product KCS12 (3-KETOACYL-COA SYNTHASE 12); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups  note 3-KETOACYL-COA SYNTHASE 12 (KCS12); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: response to osmotic stress; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: KCS3 (3-KETOACYL-COA SYNTHASE 3); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups (TAIR:AT1G07720.1); Has 1272 Blast hits to 1258 proteins in 297 species: Archae - 0; Bacteria - 516; Metazoa - 0; Fungi - 4; Plants - 621; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).  protein_id AT2G28630.1p  transcript_id AT2G28630.1  protein_id AT2G28630.1p  transcript_id AT2G28630.1  
At2g28640	chr2:012285579	0.0	C/12285579-12286645,12284625-12285375	AT2G28640.1  CDS  gene_syn ATEXO70H5, T8O18.7, T8O18_7, exocyst subunit EXO70 family protein H5  gene ATEXO70H5  function A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.  go_component exocyst|GO:0000145||IEA  go_process exocytosis|GO:0006887||IEA  go_component exocyst|GO:0000145||ISS  go_process vesicle docking during exocytosis|GO:0006904||ISS  go_function protein binding|GO:0005515||ISS  product ATEXO70H5 (exocyst subunit EXO70 family protein H5); protein binding  note exocyst subunit EXO70 family protein H5 (ATEXO70H5); FUNCTIONS IN: protein binding; INVOLVED IN: exocytosis, vesicle docking during exocytosis; LOCATED IN: exocyst; EXPRESSED IN: male gametophyte, sepal, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: ATEXO70H6 (exocyst subunit EXO70 family protein H6); protein binding (TAIR:AT1G07725.1); Has 520 Blast hits to 516 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 27; Plants - 370; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT2G28640.1p  transcript_id AT2G28640.1  protein_id AT2G28640.1p  transcript_id AT2G28640.1  
At2g28650	chr2:012289260	0.0	C/12289260-12290981	AT2G28650.1  CDS  gene_syn ATEXO70H8, T8O18.6, T8O18_6, exocyst subunit EXO70 family protein H8  gene ATEXO70H8  function A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.  go_component exocyst|GO:0000145||IEA  go_process exocytosis|GO:0006887||IEA  go_component exocyst|GO:0000145||ISS  go_process vesicle docking during exocytosis|GO:0006904||ISS  go_function protein binding|GO:0005515||ISS  product ATEXO70H8 (exocyst subunit EXO70 family protein H8); protein binding  note exocyst subunit EXO70 family protein H8 (ATEXO70H8); FUNCTIONS IN: protein binding; INVOLVED IN: exocytosis, vesicle docking during exocytosis; LOCATED IN: exocyst; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: ATEXO70H5 (exocyst subunit EXO70 family protein H5); protein binding (TAIR:AT2G28640.1); Has 507 Blast hits to 505 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 11; Plants - 373; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT2G28650.1p  transcript_id AT2G28650.1  protein_id AT2G28650.1p  transcript_id AT2G28650.1  
At2g28660	chr2:012295419	0.0	W/12295419-12295967,12296365-12296440,12296772-12296944	AT2G28660.1  CDS  gene_syn T8O18.5, T8O18_5  go_component chloroplast|GO:0009507||IEA  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_process copper ion transport|GO:0006825||ISS  go_function copper ion binding|GO:0005507||ISS  product copper-binding family protein  note copper-binding family protein; FUNCTIONS IN: copper ion binding, metal ion binding; INVOLVED IN: copper ion transport, metal ion transport; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121), Copper chaperone, chloroplast-targeted, predicted (InterPro:IPR016578); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT2G37390.1); Has 1612 Blast hits to 729 proteins in 77 species: Archae - 0; Bacteria - 43; Metazoa - 290; Fungi - 15; Plants - 615; Viruses - 0; Other Eukaryotes - 649 (source: NCBI BLink).  protein_id AT2G28660.1p  transcript_id AT2G28660.1  protein_id AT2G28660.1p  transcript_id AT2G28660.1  
At2g28670	chr2:012300380	0.0	C/12300380-12301060	AT2G28670.2  CDS  gene_syn T8O18.4, T8O18_4  go_function molecular_function|GO:0003674||ND  product disease resistance-responsive family protein / fibroin-related  note disease resistance-responsive family protein / fibroin-related; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: disease resistance-responsive family protein (TAIR:AT1G07730.2).  protein_id AT2G28670.2p  transcript_id AT2G28670.2  protein_id AT2G28670.2p  transcript_id AT2G28670.2  
At2g28670	chr2:012300380	0.0	C/12300380-12301723	AT2G28670.1  CDS  gene_syn T8O18.4, T8O18_4  go_component endomembrane system|GO:0012505||IEA  go_function molecular_function|GO:0003674||ND  product disease resistance-responsive family protein / fibroin-related  note disease resistance-responsive family protein / fibroin-related; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: disease resistance-responsive family protein (TAIR:AT1G07730.2); Has 127252 Blast hits to 41131 proteins in 1818 species: Archae - 210; Bacteria - 40368; Metazoa - 38138; Fungi - 8383; Plants - 10809; Viruses - 1932; Other Eukaryotes - 27412 (source: NCBI BLink).  protein_id AT2G28670.1p  transcript_id AT2G28670.1  protein_id AT2G28670.1p  transcript_id AT2G28670.1  
At2g28671	chr2:012300816	0.0	W/12300816-12301715	AT2G28671.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 10911 Blast hits to 9021 proteins in 783 species: Archae - 38; Bacteria - 3254; Metazoa - 3863; Fungi - 1112; Plants - 786; Viruses - 336; Other Eukaryotes - 1522 (source: NCBI BLink).  protein_id AT2G28671.1p  transcript_id AT2G28671.1  protein_id AT2G28671.1p  transcript_id AT2G28671.1  
At2g28680	chr2:012304552	0.0	C/12304552-12304747,12303354-12304074,12303118-12303271	AT2G28680.1  CDS  gene_syn T8O18.3, T8O18_3  go_function nutrient reservoir activity|GO:0045735||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nutrient reservoir activity|GO:0045735||ISS  product cupin family protein  note cupin family protein; FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, sepal, male gametophyte, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), 11-S plant seed storage protein (InterPro:IPR006044); BEST Arabidopsis thaliana protein match is: cupin family protein (TAIR:AT1G07750.1); Has 692 Blast hits to 598 proteins in 97 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 688; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G28680.1p  transcript_id AT2G28680.1  protein_id AT2G28680.1p  transcript_id AT2G28680.1  
At2g28690	chr2:012308442	0.0	C/12308442-12308477,12307140-12307799	AT2G28690.1  CDS  gene_syn T8O18.2, T8O18_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1635 (InterPro:IPR012862); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59760.1); Has 49 Blast hits to 49 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G28690.1p  transcript_id AT2G28690.1  protein_id AT2G28690.1p  transcript_id AT2G28690.1  
At2g28700	chr2:012317969	0.0	C/12317969-12318724,12317774-12317875,12317384-12317515	AT2G28700.1  CDS  gene_syn AGAMOUS-LIKE 46, AGL46, T11P11.1, T11P11_1  gene AGL46  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL46 (AGAMOUS-LIKE 46); DNA binding / transcription factor  note AGAMOUS-LIKE 46 (AGL46); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: MADS-box protein (AGL45) (TAIR:AT3G05860.1); Has 1563 Blast hits to 1562 proteins in 228 species: Archae - 0; Bacteria - 4; Metazoa - 409; Fungi - 18; Plants - 1104; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT2G28700.1p  transcript_id AT2G28700.1  protein_id AT2G28700.1p  transcript_id AT2G28700.1  
At2g28710	chr2:012322974	0.0	W/12322974-12323444	AT2G28710.1  CDS  gene_syn T11P11.2, T11P11_2  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: RHL41 (RESPONSIVE TO HIGH LIGHT 41); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT5G59820.1); Has 907 Blast hits to 871 proteins in 97 species: Archae - 0; Bacteria - 0; Metazoa - 429; Fungi - 0; Plants - 469; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G28710.1p  transcript_id AT2G28710.1  protein_id AT2G28710.1p  transcript_id AT2G28710.1  
At2g28720	chr2:012327043	0.0	W/12327043-12327498	AT2G28720.1  CDS  gene_syn T11P11.3, T11P11_3  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product histone H2B, putative  note histone H2B, putative; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: HTB4; DNA binding (TAIR:AT5G59910.1); Has 2974 Blast hits to 2871 proteins in 294 species: Archae - 0; Bacteria - 57; Metazoa - 1873; Fungi - 188; Plants - 386; Viruses - 0; Other Eukaryotes - 470 (source: NCBI BLink).  protein_id AT2G28720.1p  transcript_id AT2G28720.1  protein_id AT2G28720.1p  transcript_id AT2G28720.1  
At2g28725	chr2:012328605	0.0	W/12328605-12328943	AT2G28725.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07795.1); Has 23 Blast hits to 23 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G28725.1p  transcript_id AT2G28725.1  protein_id AT2G28725.1p  transcript_id AT2G28725.1  
At2g28730	chr2:012329003	0.0	W/12329003-12329074	AT2G28730.1  tRNA  gene_syn 42869.TRNA-CYS-1, 51151.TRNA-CYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Cys (anticodon: GCA)  transcript_id AT2G28730.1  
At2g28740	chr2:012329643	0.0	C/12329643-12329954	AT2G28740.1  CDS  gene_syn F8N16.2, F8N16_2, HIS4, HISTONE H4  gene HIS4  function histone 4  go_component nucleolus|GO:0005730|15496452|IDA  go_component nucleosome|GO:0000786|9247544|NAS  go_process response to water deprivation|GO:0009414|18552355|IEP  go_function DNA binding|GO:0003677|9247544|ISS  product HIS4; DNA binding  note HIS4; FUNCTIONS IN: DNA binding; INVOLVED IN: response to water deprivation; LOCATED IN: nucleolus, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125), Histone H4 (InterPro:IPR001951); BEST Arabidopsis thaliana protein match is: histone H4 (TAIR:AT5G59970.1); Has 2713 Blast hits to 2713 proteins in 359 species: Archae - 0; Bacteria - 0; Metazoa - 1566; Fungi - 279; Plants - 355; Viruses - 6; Other Eukaryotes - 507 (source: NCBI BLink).  protein_id AT2G28740.1p  transcript_id AT2G28740.1  protein_id AT2G28740.1p  transcript_id AT2G28740.1  
At2g28750	chr2:012331627	0.0	W/12331627-12332774	AT2G28750.1  mRNA_TE_gene  pseudo  gene_syn F8N16.3  note Transposable element gene, pseudogene, similar to putative reverse transcriptase, blastp match of 27% identity and 1.8e-07 P-value to GP|14018103|gb|AAK52166.1|AC084831_20|AC084831 putative reverse transcriptase {Oryza sativa}  
At2g28755	chr2:012334355	0.0	C/12334355-12334459,12334172-12334237	AT2G28755.1  CDS  gene_syn F8N16.4, F8N16_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product UDP-D-glucuronate carboxy-lyase-related  note UDP-D-glucuronate carboxy-lyase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: NAD-dependent epimerase/dehydratase family protein (TAIR:AT2G28760.3); Has 596 Blast hits to 596 proteins in 168 species: Archae - 2; Bacteria - 230; Metazoa - 72; Fungi - 4; Plants - 138; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).  protein_id AT2G28755.1p  transcript_id AT2G28755.1  protein_id AT2G28755.1p  transcript_id AT2G28755.1  
At2g28760	chr2:012338559	0.0	C/12338559-12338642,12338077-12338251,12337899-12337990,12337650-12337803,12337481-12337558,12337294-12337387,12337087-12337153,12336729-12336833,12336469-12336651	AT2G28760.1  CDS  gene_syn F8N16.5, F8N16_5, UDP-XYL SYNTHASE 6, UXS6  gene UXS6  go_component plasma membrane|GO:0005886|17644812|IDA  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  go_process nucleotide-sugar metabolic process|GO:0009225||ISS  go_function catalytic activity|GO:0003824||ISS  product NAD-dependent epimerase/dehydratase family protein  note UDP-XYL SYNTHASE 6 (UXS6); FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: cellular metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: UXS5; UDP-glucuronate decarboxylase/ catalytic (TAIR:AT3G46440.2); Has 32193 Blast hits to 32159 proteins in 1749 species: Archae - 518; Bacteria - 14743; Metazoa - 694; Fungi - 281; Plants - 822; Viruses - 72; Other Eukaryotes - 15063 (source: NCBI BLink).  protein_id AT2G28760.1p  transcript_id AT2G28760.1  protein_id AT2G28760.1p  transcript_id AT2G28760.1  
At2g28760	chr2:012338559	0.0	C/12338559-12338642,12338077-12338251,12337899-12337990,12337650-12337803,12337481-12337558,12337294-12337387,12337087-12337153,12336729-12336833,12336469-12336651	AT2G28760.2  CDS  gene_syn F8N16.5, F8N16_5, UDP-XYL SYNTHASE 6, UXS6  gene UXS6  go_component plasma membrane|GO:0005886|17644812|IDA  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  go_process nucleotide-sugar metabolic process|GO:0009225||ISS  go_function catalytic activity|GO:0003824||ISS  product NAD-dependent epimerase/dehydratase family protein  note UDP-XYL SYNTHASE 6 (UXS6); FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: cellular metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: UXS5; UDP-glucuronate decarboxylase/ catalytic (TAIR:AT3G46440.2); Has 32193 Blast hits to 32159 proteins in 1749 species: Archae - 518; Bacteria - 14743; Metazoa - 694; Fungi - 281; Plants - 822; Viruses - 72; Other Eukaryotes - 15063 (source: NCBI BLink).  protein_id AT2G28760.2p  transcript_id AT2G28760.2  protein_id AT2G28760.2p  transcript_id AT2G28760.2  
At2g28760	chr2:012338559	0.0	C/12338559-12338642,12338077-12338251,12337899-12337990,12337650-12337803,12337481-12337558,12337294-12337387,12337087-12337153,12336729-12336833,12336469-12336651	AT2G28760.3  CDS  gene_syn F8N16.5, F8N16_5, UDP-XYL SYNTHASE 6, UXS6  gene UXS6  go_component plasma membrane|GO:0005886|17644812|IDA  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  go_process nucleotide-sugar metabolic process|GO:0009225||ISS  go_function catalytic activity|GO:0003824||ISS  product NAD-dependent epimerase/dehydratase family protein  note UDP-XYL SYNTHASE 6 (UXS6); FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: cellular metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: UXS5; UDP-glucuronate decarboxylase/ catalytic (TAIR:AT3G46440.2); Has 32193 Blast hits to 32159 proteins in 1749 species: Archae - 518; Bacteria - 14743; Metazoa - 694; Fungi - 281; Plants - 822; Viruses - 72; Other Eukaryotes - 15063 (source: NCBI BLink).  protein_id AT2G28760.3p  transcript_id AT2G28760.3  protein_id AT2G28760.3p  transcript_id AT2G28760.3  
At2g28770	chr2:012339751	0.0	W/12339751-12339822	AT2G28770.1  tRNA  gene_syn 42869.TRNA-HIS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-His (anticodon: GTG)  transcript_id AT2G28770.1  
At2g28780	chr2:012342745	0.0	C/12342745-12343281,12341893-12342060,12340099-12341784	AT2G28780.1  CDS  gene_syn F8N16.7, F8N16_7  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: inflorescence meristem, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09450.1); Has 374 Blast hits to 373 proteins in 184 species: Archae - 0; Bacteria - 340; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT2G28780.1p  transcript_id AT2G28780.1  protein_id AT2G28780.1p  transcript_id AT2G28780.1  
At2g28790	chr2:012354664	0.0	C/12354664-12355413	AT2G28790.1  CDS  gene_syn F8N16.8, F8N16_8  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process response to other organism|GO:0051707||ISS  go_function molecular_function|GO:0003674||ND  product osmotin-like protein, putative  note osmotin-like protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: pathogenesis-related thaumatin family protein (TAIR:AT1G75800.1); Has 1026 Blast hits to 1010 proteins in 136 species: Archae - 0; Bacteria - 12; Metazoa - 47; Fungi - 55; Plants - 906; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT2G28790.1p  transcript_id AT2G28790.1  protein_id AT2G28790.1p  transcript_id AT2G28790.1  
At2g28800	chr2:012358784	0.0	C/12358784-12359158,12358585-12358695,12358400-12358474,12358262-12358322,12358104-12358177,12357898-12358002,12357649-12357756,12357419-12357556	AT2G28800.2  CDS  gene_syn ABL3, ALB3, ALBINO 3, CHLOROPLAST MEMBRANE PROTEIN ALB3, F8N16.9, F8N16_9  gene ALB3  function member of Chloroplast membrane protein ALBINO3 family  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast|GO:0009507|9165749|IDA  go_component chloroplast thylakoid membrane|GO:0009535|10636840|IDA  go_component chloroplast thylakoid membrane|GO:0009535|16595657|IDA  go_process thylakoid membrane organization|GO:0010027|18764927|IMP  go_process protein import into chloroplast thylakoid membrane|GO:0045038|10636840|IDA  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450|10636840|IEP  product ALB3 (ALBINO 3); P-P-bond-hydrolysis-driven protein transmembrane transporter  note ALBINO 3 (ALB3); FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein import into chloroplast thylakoid membrane, thylakoid membrane organization; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 60 kDa inner membrane insertion protein (InterPro:IPR001708); BEST Arabidopsis thaliana protein match is: ALB4 (ALBINA 4) (TAIR:AT1G24490.1); Has 5521 Blast hits to 5521 proteins in 1392 species: Archae - 0; Bacteria - 2970; Metazoa - 92; Fungi - 26; Plants - 79; Viruses - 0; Other Eukaryotes - 2354 (source: NCBI BLink).  protein_id AT2G28800.2p  transcript_id AT2G28800.2  protein_id AT2G28800.2p  transcript_id AT2G28800.2  
At2g28800	chr2:012358784	0.0	C/12358784-12359158,12358585-12358695,12358400-12358474,12358262-12358322,12358104-12358177,12357898-12358002,12357649-12357756,12357449-12357556,12357133-12357144	AT2G28800.3  CDS  gene_syn ABL3, ALB3, ALBINO 3, CHLOROPLAST MEMBRANE PROTEIN ALB3, F8N16.9, F8N16_9  gene ALB3  function member of Chloroplast membrane protein ALBINO3 family  go_component chloroplast|GO:0009507|9165749|IDA  go_component chloroplast thylakoid membrane|GO:0009535|10636840|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast thylakoid membrane|GO:0009535|16595657|IDA  go_process thylakoid membrane organization|GO:0010027|18764927|IMP  go_process protein import into chloroplast thylakoid membrane|GO:0045038|10636840|IDA  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450|10636840|IEP  product ALB3 (ALBINO 3); P-P-bond-hydrolysis-driven protein transmembrane transporter  note ALBINO 3 (ALB3); FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein import into chloroplast thylakoid membrane, thylakoid membrane organization; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 60 kDa inner membrane insertion protein (InterPro:IPR001708); BEST Arabidopsis thaliana protein match is: ALB4 (ALBINA 4) (TAIR:AT1G24490.1); Has 5483 Blast hits to 5483 proteins in 1398 species: Archae - 0; Bacteria - 2951; Metazoa - 89; Fungi - 24; Plants - 78; Viruses - 0; Other Eukaryotes - 2341 (source: NCBI BLink).  protein_id AT2G28800.3p  transcript_id AT2G28800.3  protein_id AT2G28800.3p  transcript_id AT2G28800.3  
At2g28800	chr2:012358784	0.0	C/12358784-12359158,12358585-12358695,12358400-12358474,12358262-12358322,12358104-12358177,12357898-12358002,12357649-12357756,12357453-12357556,12356995-12357144,12356669-12356894	AT2G28800.1  CDS  gene_syn ABL3, ALB3, ALBINO 3, CHLOROPLAST MEMBRANE PROTEIN ALB3, F8N16.9, F8N16_9  gene ALB3  function member of Chloroplast membrane protein ALBINO3 family  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast|GO:0009507|9165749|IDA  go_component chloroplast thylakoid membrane|GO:0009535|10636840|IDA  go_component chloroplast thylakoid membrane|GO:0009535|16595657|IDA  go_process thylakoid membrane organization|GO:0010027|18764927|IMP  go_process protein import into chloroplast thylakoid membrane|GO:0045038|10636840|IDA  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450|10636840|IEP  product ALB3 (ALBINO 3); P-P-bond-hydrolysis-driven protein transmembrane transporter  note ALBINO 3 (ALB3); FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein import into chloroplast thylakoid membrane, thylakoid membrane organization; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 60 kDa inner membrane insertion protein (InterPro:IPR001708); BEST Arabidopsis thaliana protein match is: ALB4 (ALBINA 4) (TAIR:AT1G24490.1); Has 5908 Blast hits to 5902 proteins in 1416 species: Archae - 0; Bacteria - 3008; Metazoa - 136; Fungi - 50; Plants - 88; Viruses - 0; Other Eukaryotes - 2626 (source: NCBI BLink).  protein_id AT2G28800.1p  transcript_id AT2G28800.1  protein_id AT2G28800.1p  transcript_id AT2G28800.1  
At2g28810	chr2:012363681	0.0	W/12363681-12363734,12364112-12365080	AT2G28810.1  CDS  gene_syn F8N16.10, F8N16_10  go_component nucleus|GO:0005634|16581911|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product Dof-type zinc finger domain-containing protein  note Dof-type zinc finger domain-containing protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: OBP2; DNA binding / transcription factor (TAIR:AT1G07640.3); Has 936 Blast hits to 870 proteins in 71 species: Archae - 0; Bacteria - 4; Metazoa - 81; Fungi - 22; Plants - 620; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink).  protein_id AT2G28810.1p  transcript_id AT2G28810.1  protein_id AT2G28810.1p  transcript_id AT2G28810.1  
At2g28830	chr2:012370339	0.0	C/12370339-12370608,12370135-12370251,12369602-12370051,12368417-12369515,12367876-12368141,12367629-12367754,12367001-12367561	AT2G28830.1  CDS  gene_syn F8N16.12, F8N16_12  go_component ubiquitin ligase complex|GO:0000151||IEA  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  go_process response to chitin|GO:0010200|17722694|IEP  product binding / structural constituent of ribosome / ubiquitin-protein ligase  note binding / structural constituent of ribosome / ubiquitin-protein ligase; FUNCTIONS IN: ubiquitin-protein ligase activity, structural constituent of ribosome, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex, ribosome, intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Ribosomal protein L10e/L16 (InterPro:IPR016180), Armadillo (InterPro:IPR000225), Ribosomal protein L16 (InterPro:IPR000114), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: PUB13 (PLANT U-BOX 13); ubiquitin-protein ligase (TAIR:AT3G46510.1); Has 4249 Blast hits to 3154 proteins in 216 species: Archae - 0; Bacteria - 22; Metazoa - 1271; Fungi - 546; Plants - 1890; Viruses - 3; Other Eukaryotes - 517 (source: NCBI BLink).  protein_id AT2G28830.1p  transcript_id AT2G28830.1  protein_id AT2G28830.1p  transcript_id AT2G28830.1  
At2g28840	chr2:012378542	0.0	W/12378542-12378721,12378810-12378869,12378947-12379018,12379092-12379213,12379295-12379435,12379526-12379633,12379709-12379961,12380040-12380474	AT2G28840.1  CDS  gene_syn F8N16.13, F8N16_13  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT5G07270.1); Has 43719 Blast hits to 18213 proteins in 670 species: Archae - 45; Bacteria - 2446; Metazoa - 25804; Fungi - 2955; Plants - 1772; Viruses - 339; Other Eukaryotes - 10358 (source: NCBI BLink).  protein_id AT2G28840.1p  transcript_id AT2G28840.1  protein_id AT2G28840.1p  transcript_id AT2G28840.1  
At2g28840	chr2:012378672	0.0	W/12378672-12378869,12378947-12379018,12379092-12379213,12379295-12379435,12379526-12379633,12379709-12379961,12380040-12380474	AT2G28840.2  CDS  gene_syn F8N16.13, F8N16_13  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT5G07270.1); Has 35774 Blast hits to 15715 proteins in 589 species: Archae - 46; Bacteria - 1897; Metazoa - 22029; Fungi - 2126; Plants - 1354; Viruses - 243; Other Eukaryotes - 8079 (source: NCBI BLink).  protein_id AT2G28840.2p  transcript_id AT2G28840.2  protein_id AT2G28840.2p  transcript_id AT2G28840.2  
At2g28850	chr2:012383480	0.0	C/12383480-12384961	AT2G28850.1  CDS  gene_syn CYP710A3, F8N16.14, F8N16_14, cytochrome P450, family 710, subfamily A, polypeptide 3  gene CYP710A3  function member of CYP710A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP710A3 (cytochrome P450, family 710, subfamily A, polypeptide 3); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note cytochrome P450, family 710, subfamily A, polypeptide 3 (CYP710A3); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: stem, petal, root cap of the primary root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP710A4 (cytochrome P450, family 710, subfamily A, polypeptide 4); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT2G28860.1); Has 19778 Blast hits to 19747 proteins in 1112 species: Archae - 21; Bacteria - 1830; Metazoa - 9457; Fungi - 3236; Plants - 4595; Viruses - 0; Other Eukaryotes - 639 (source: NCBI BLink).  protein_id AT2G28850.1p  transcript_id AT2G28850.1  protein_id AT2G28850.1p  transcript_id AT2G28850.1  
At2g28860	chr2:012388342	0.0	C/12388342-12389823	AT2G28860.1  CDS  gene_syn CYP710A4, F8N16.15, F8N16_15, cytochrome P450, family 710, subfamily A, polypeptide 4  gene CYP710A4  function member of CYP710A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP710A4 (cytochrome P450, family 710, subfamily A, polypeptide 4); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note cytochrome P450, family 710, subfamily A, polypeptide 4 (CYP710A4); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: root tip, root hair, root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP710A3 (cytochrome P450, family 710, subfamily A, polypeptide 3); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT2G28850.1); Has 19333 Blast hits to 19305 proteins in 1083 species: Archae - 23; Bacteria - 1733; Metazoa - 9401; Fungi - 2998; Plants - 4542; Viruses - 0; Other Eukaryotes - 636 (source: NCBI BLink).  protein_id AT2G28860.1p  transcript_id AT2G28860.1  protein_id AT2G28860.1p  transcript_id AT2G28860.1  
At2g28870	chr2:012394363	0.0	C/12394363-12394833	AT2G28870.1  CDS  gene_syn F8N16.16, F8N16_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 19 Blast hits to 19 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G28870.1p  transcript_id AT2G28870.1  protein_id AT2G28870.1p  transcript_id AT2G28870.1  
At2g28880	chr2:012402781	0.0	C/12402781-12403108,12402559-12402690,12402421-12402488,12402270-12402334,12402007-12402073,12401643-12401924,12401438-12401564,12400967-12401274,12400798-12400877,12400499-12400601,12400272-12400354,12399533-12400150,12398937-12399435	AT2G28880.1  CDS  gene_syn F8N16.17, F8N16_17, emb1997, embryo defective 1997  gene emb1997  go_component chloroplast|GO:0009507||IEA  go_function catalytic activity|GO:0003824||IEA  go_function anthranilate synthase activity|GO:0004049||IEA  go_function oxo-acid-lyase activity|GO:0016833||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product emb1997 (embryo defective 1997); anthranilate synthase/ catalytic/ oxo-acid-lyase  note embryo defective 1997 (emb1997); FUNCTIONS IN: oxo-acid-lyase activity, catalytic activity, anthranilate synthase activity; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), Glutamine amidotransferase of anthranilate synthase (InterPro:IPR006221), Carbamoyl phosphate synthase, GATase region (InterPro:IPR001317), Anthranilate synthase component I, N-terminal (InterPro:IPR006805), Chorismate binding, C-terminal (InterPro:IPR015890), Anthranilate synthase component I and chorismate binding protein (InterPro:IPR005801), Para-aminobenzoate synthase, component I (InterPro:IPR005802), Glutamine amidotransferase type 1 (InterPro:IPR017926), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); BEST Arabidopsis thaliana protein match is: ASA2 (ANTHRANILATE SYNTHASE 2); anthranilate synthase (TAIR:AT2G29690.1); Has 18168 Blast hits to 17917 proteins in 1808 species: Archae - 340; Bacteria - 9728; Metazoa - 385; Fungi - 525; Plants - 163; Viruses - 0; Other Eukaryotes - 7027 (source: NCBI BLink).  protein_id AT2G28880.1p  transcript_id AT2G28880.1  protein_id AT2G28880.1p  transcript_id AT2G28880.1  
At2g28890	chr2:012406593	0.0	C/12406593-12408062,12406396-12406509,12406004-12406268,12405799-12405914	AT2G28890.1  CDS  gene_syn F8N16.18, F8N16_18, PLL4, POLTERGEIST LIKE 4, PROTEIN PHOSPHATASE 2C  gene PLL4  function Encodes a protein phosphatase 2C like gene, similar to POL. Involved in leaf development. Knockout mutants have abnormally shaped leaves.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_process leaf development|GO:0048366|16112663|IMP  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PLL4 (POLTERGEIST LIKE 4); catalytic/ protein serine/threonine phosphatase  note POLTERGEIST LIKE 4 (PLL4); FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: N-terminal protein myristoylation, leaf development; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: PLL5; catalytic/ protein serine/threonine phosphatase (TAIR:AT1G07630.1); Has 1823 Blast hits to 1803 proteins in 191 species: Archae - 0; Bacteria - 27; Metazoa - 484; Fungi - 155; Plants - 867; Viruses - 0; Other Eukaryotes - 290 (source: NCBI BLink).  protein_id AT2G28890.1p  transcript_id AT2G28890.1  protein_id AT2G28890.1p  transcript_id AT2G28890.1  
At2g28900	chr2:012415346	0.0	C/12415346-12415459,12415207-12415258,12414924-12414955,12414794-12414827,12414649-12414716,12414423-12414569	AT2G28900.1  CDS  gene_syn ATOEP16-1, ATOEP16-L, F8N16.19, F8N16_19, OEP16, OUTER PLASTID ENVELOPE PROTEIN 16-1, OUTER PLASTID ENVELOPE PROTEIN 16-L, outer envelope protein 16  gene ATOEP16-1  function Encodes AtOEP16, a 16-KDa plastid outer membrane protein involved in plastid import of protochlorophyllide oxidoreductase A. Predominantly expressed in leaves and is also inducible by cold treatment.  go_component vacuole|GO:0005773|15539469|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function protein transporter activity|GO:0008565||IEA  go_component plastid outer membrane|GO:0009527|17261815|IDA  go_process response to cold|GO:0009409|16709189|IEP  go_process response to wounding|GO:0009611|16021335|IEP  go_process response to sucrose stimulus|GO:0009744|16463203|IEP  go_process response to glucose stimulus|GO:0009749|16463203|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16021335|IEP  go_process protein transport|GO:0015031||ISS  go_process protein import into chloroplast stroma|GO:0045037|17261815|IDA  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product ATOEP16-1 (OUTER PLASTID ENVELOPE PROTEIN 16-1); P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter  note OUTER PLASTID ENVELOPE PROTEIN 16-1 (ATOEP16-1); FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: in 7 processes; LOCATED IN: chloroplast, plastid outer membrane, vacuole, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial import inner membrane translocase, subunit Tim17/22 (InterPro:IPR003397); BEST Arabidopsis thaliana protein match is: mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (TAIR:AT4G16160.1); Has 85 Blast hits to 85 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G28900.1p  transcript_id AT2G28900.1  protein_id AT2G28900.1p  transcript_id AT2G28900.1  
At2g28910	chr2:012415992	0.0	C/12415992-12416990	AT2G28910.1  CDS  gene_syn CAX INTERACTING PROTEIN 4, CXIP4, F8N16.20, F8N16_20  gene CXIP4  function Encodes a CAX-interacting protein (CXIP4). The gene product is located in the nucleus of GFP-CXIP4-expressing yeast cells. When transiently expressed in the tobacco leaves, GFP-CXIP4 locates to the nucleus as well as in discrete areas of the cytoplasm (which do not overlap with mitochondria).  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634|14960315|IDA  go_component cytoplasm|GO:0005737|14960315|IDA  go_process response to zinc ion|GO:0010043|14960315|IEP  go_process positive regulation of calcium ion transport|GO:0051928|14960315|IGI  product CXIP4 (CAX INTERACTING PROTEIN 4); nucleic acid binding / zinc ion binding  note CAX INTERACTING PROTEIN 4 (CXIP4); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: positive regulation of calcium ion transport, response to zinc ion; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); Has 65081 Blast hits to 31054 proteins in 1154 species: Archae - 40; Bacteria - 5068; Metazoa - 32561; Fungi - 7491; Plants - 3437; Viruses - 432; Other Eukaryotes - 16052 (source: NCBI BLink).  protein_id AT2G28910.1p  transcript_id AT2G28910.1  protein_id AT2G28910.1p  transcript_id AT2G28910.1  
At2g28920	chr2:012418017	0.0	W/12418017-12418454	AT2G28920.1  CDS  gene_syn F8N16.21, F8N16_21  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: ATL5 (ATL5); protein binding / zinc ion binding (TAIR:AT3G62690.1); Has 5075 Blast hits to 5062 proteins in 210 species: Archae - 0; Bacteria - 0; Metazoa - 1600; Fungi - 341; Plants - 2297; Viruses - 35; Other Eukaryotes - 802 (source: NCBI BLink).  protein_id AT2G28920.1p  transcript_id AT2G28920.1  protein_id AT2G28920.1p  transcript_id AT2G28920.1  
At2g28930	chr2:012424551	0.0	W/12424551-12424593,12425033-12425352,12425443-12425578,12425668-12425810,12425887-12426010,12426093-12426565	AT2G28930.2  CDS  gene_syn APK1B, ARABIDOPSIS PROTEIN KINASE 1B, T9I4.1, T9I4_1  gene APK1B  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product APK1B; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note APK1B; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: APK1A; kinase/ protein serine/threonine kinase (TAIR:AT1G07570.2); Has 83114 Blast hits to 82155 proteins in 3045 species: Archae - 42; Bacteria - 7280; Metazoa - 37061; Fungi - 6182; Plants - 18583; Viruses - 340; Other Eukaryotes - 13626 (source: NCBI BLink).  protein_id AT2G28930.2p  transcript_id AT2G28930.2  protein_id AT2G28930.2p  transcript_id AT2G28930.2  
At2g28930	chr2:012424551	0.0	W/12424551-12424602,12425033-12425352,12425443-12425578,12425668-12425810,12425887-12426010,12426093-12426565	AT2G28930.3  CDS  gene_syn APK1B, ARABIDOPSIS PROTEIN KINASE 1B, T9I4.1, T9I4_1  gene APK1B  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product APK1B; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note APK1B; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: APK1A; kinase/ protein serine/threonine kinase (TAIR:AT1G07570.2); Has 83141 Blast hits to 82181 proteins in 3045 species: Archae - 42; Bacteria - 7282; Metazoa - 37065; Fungi - 6189; Plants - 18593; Viruses - 340; Other Eukaryotes - 13630 (source: NCBI BLink).  protein_id AT2G28930.3p  transcript_id AT2G28930.3  protein_id AT2G28930.3p  transcript_id AT2G28930.3  
At2g28930	chr2:012424957	0.0	W/12424957-12425352,12425443-12425578,12425668-12425810,12425887-12426010,12426093-12426565	AT2G28930.1  CDS  gene_syn APK1B, ARABIDOPSIS PROTEIN KINASE 1B, T9I4.1, T9I4_1  gene APK1B  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product APK1B; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note APK1B; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: APK1A; kinase/ protein serine/threonine kinase (TAIR:AT1G07570.2); Has 83108 Blast hits to 82149 proteins in 3045 species: Archae - 42; Bacteria - 7282; Metazoa - 37068; Fungi - 6179; Plants - 18571; Viruses - 340; Other Eukaryotes - 13626 (source: NCBI BLink).  protein_id AT2G28930.1p  transcript_id AT2G28930.1  protein_id AT2G28930.1p  transcript_id AT2G28930.1  
At2g28940	chr2:012428241	0.0	C/12428241-12428314,12427689-12427959,12427486-12427608,12426853-12427416	AT2G28940.1  CDS  gene_syn T9I4.2, T9I4_2  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT3G09830.2); Has 78307 Blast hits to 77425 proteins in 1944 species: Archae - 38; Bacteria - 6652; Metazoa - 34492; Fungi - 5927; Plants - 17864; Viruses - 321; Other Eukaryotes - 13013 (source: NCBI BLink).  protein_id AT2G28940.1p  transcript_id AT2G28940.1  protein_id AT2G28940.1p  transcript_id AT2G28940.1  
At2g28940	chr2:012428241	0.0	C/12428241-12428678,12427689-12427952,12427486-12427608,12426853-12427416	AT2G28940.2  CDS  gene_syn T9I4.2, T9I4_2  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT2G39110.1); Has 81015 Blast hits to 80048 proteins in 2308 species: Archae - 40; Bacteria - 6913; Metazoa - 35685; Fungi - 6155; Plants - 18356; Viruses - 328; Other Eukaryotes - 13538 (source: NCBI BLink).  protein_id AT2G28940.2p  transcript_id AT2G28940.2  protein_id AT2G28940.2p  transcript_id AT2G28940.2  
At2g28950	chr2:012433338	0.0	C/12433338-12433482,12432824-12433142,12431840-12432149	AT2G28950.1  CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN A6, ARABIDOPSIS THALIANA TEXPANSIN 6, ATEXP6, ATEXPA6, ATHEXP ALPHA 1.8, T9I4.3, T9I4_3  gene ATEXPA6  function Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process syncytium formation|GO:0006949|16942607|IEP  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828||ISS  go_process plant-type cell wall modification during multidimensional cell growth|GO:0009831||ISS  product ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6)  note ARABIDOPSIS THALIANA EXPANSIN A6 (ATEXPA6); INVOLVED IN: syncytium formation, plant-type cell wall modification during multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4) (TAIR:AT2G39700.1); Has 1423 Blast hits to 1422 proteins in 118 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 17; Plants - 1378; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT2G28950.1p  transcript_id AT2G28950.1  protein_id AT2G28950.1p  transcript_id AT2G28950.1  
At2g28960	chr2:012442257	0.0	C/12442257-12442347,12441422-12441950,12440855-12441327,12440369-12440513,12440201-12440272,12439942-12440013,12439761-12439838,12439524-12439681,12439187-12439419,12438984-12439110,12438820-12438885,12438554-12438743,12438058-12438466	AT2G28960.1  CDS  gene_syn T9I4.4, T9I4_4  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat protein kinase, putative  note leucine-rich repeat protein kinase, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / protein kinase family protein (TAIR:AT2G29000.1); Has 100729 Blast hits to 88118 proteins in 3201 species: Archae - 54; Bacteria - 7806; Metazoa - 38284; Fungi - 6709; Plants - 32578; Viruses - 379; Other Eukaryotes - 14919 (source: NCBI BLink).  protein_id AT2G28960.1p  transcript_id AT2G28960.1  protein_id AT2G28960.1p  transcript_id AT2G28960.1  
At2g28970	chr2:012443919	0.0	W/12443919-12443988,12444108-12444299,12444589-12444643,12445052-12445527,12445612-12445756,12445853-12445924,12446022-12446093,12446193-12446270,12446451-12446608,12446685-12446935,12447033-12447159,12447258-12447323,12447467-12447656,12447755-12448163	AT2G28970.1  CDS  gene_syn T9I4.5, T9I4_5  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat protein kinase, putative  note leucine-rich repeat protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT2G28990.1); Has 115707 Blast hits to 89417 proteins in 3212 species: Archae - 48; Bacteria - 7904; Metazoa - 39307; Fungi - 6758; Plants - 45667; Viruses - 376; Other Eukaryotes - 15647 (source: NCBI BLink).  protein_id AT2G28970.1p  transcript_id AT2G28970.1  protein_id AT2G28970.1p  transcript_id AT2G28970.1  
At2g28980	chr2:012449336	0.0	C/12449336-12454356	AT2G28980.1  mRNA_TE_gene  pseudo  gene_syn T9I4.6, T9I4_6  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.3e-43 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At2g28990	chr2:012455055	0.0	W/12455055-12455124,12455240-12455777,12456376-12456851,12456983-12457127,12457206-12457277,12457372-12457443,12457523-12457600,12457818-12457978,12458066-12458316,12458400-12458526,12458642-12458707,12458861-12459050,12459133-12459541	AT2G28990.1  CDS  gene_syn T9I4.7, T9I4_7  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat protein kinase, putative  note leucine-rich repeat protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT2G28970.1); Has 111253 Blast hits to 86832 proteins in 3148 species: Archae - 34; Bacteria - 7510; Metazoa - 37555; Fungi - 6637; Plants - 44007; Viruses - 375; Other Eukaryotes - 15135 (source: NCBI BLink).  protein_id AT2G28990.1p  transcript_id AT2G28990.1  protein_id AT2G28990.1p  transcript_id AT2G28990.1  
At2g29000	chr2:012460781	0.0	W/12460781-12460865,12461161-12461686,12461793-12462268,12462373-12462517,12462593-12462664,12462936-12463007,12463236-12463313,12463406-12463560,12463636-12463853,12463949-12464075,12464200-12464265,12464359-12464548,12464629-12465037	AT2G29000.1  CDS  gene_syn T9I4.8, T9I4_8  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function protein kinase activity|GO:0004672||ISS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein / protein kinase family protein  note leucine-rich repeat family protein / protein kinase family protein; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT2G28960.1); Has 103963 Blast hits to 88592 proteins in 3244 species: Archae - 40; Bacteria - 7789; Metazoa - 38583; Fungi - 6817; Plants - 35344; Viruses - 360; Other Eukaryotes - 15030 (source: NCBI BLink).  protein_id AT2G29000.1p  transcript_id AT2G29000.1  protein_id AT2G29000.1p  transcript_id AT2G29000.1  
At2g29010	chr2:012465764	0.0	W/12465764-12469464	AT2G29010.1  pseudogenic_transcript  pseudo  gene_syn T9I4.9  note pseudogene, receptor protein kinase, contains a protein kinase domain (PS50011); contains a S-locus glycoprotein family domain (PF00954); contains LRR Leucine Rich Repeat domains; blastp match of 42% identity and 3.1e-185 P-value to GP|9837280|gb|AAG00510.1||AF285172 leaf senescence-associated receptor-like protein kinase {Phaseolus vulgaris}  
At2g29020	chr2:012469869	0.0	W/12469869-12469997,12470611-12470714,12471151-12471280,12471390-12471428	AT2G29020.1  CDS  gene_syn T9I4.10, T9I4_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Rab5-interacting family protein  note Rab5-interacting family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rab5-interacting (InterPro:IPR010742); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59410.1); Has 144 Blast hits to 144 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 108; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT2G29020.1p  transcript_id AT2G29020.1  protein_id AT2G29020.1p  transcript_id AT2G29020.1  
At2g29030	chr2:012471773	0.0	C/12471773-12471844	AT2G29030.1  tRNA  gene_syn 35226.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: TCC)  transcript_id AT2G29030.1  
At2g29040	chr2:012473629	0.0	C/12473629-12474962,12472425-12473253	AT2G29040.1  CDS  gene_syn T9I4.12, T9I4_12  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product exostosin family protein  note exostosin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: MUR3 (MURUS 3); catalytic/ transferase, transferring glycosyl groups (TAIR:AT2G20370.1); Has 3706 Blast hits to 2903 proteins in 247 species: Archae - 0; Bacteria - 208; Metazoa - 957; Fungi - 304; Plants - 341; Viruses - 35; Other Eukaryotes - 1861 (source: NCBI BLink).  protein_id AT2G29040.1p  transcript_id AT2G29040.1  protein_id AT2G29040.1p  transcript_id AT2G29040.1  
At2g29045	chr2:012476372	0.0	W/12476372-12476432,12476932-12477107	AT2G29045.1  CDS  gene_syn LCR62, Low-molecular-weight cysteine-rich 62  gene LCR62  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR62 (Low-molecular-weight cysteine-rich 62)  note Low-molecular-weight cysteine-rich 62 (LCR62); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: LCR61 (Low-molecular-weight cysteine-rich 61) (TAIR:AT4G30064.1); Has 28 Blast hits to 28 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G29045.1p  transcript_id AT2G29045.1  protein_id AT2G29045.1p  transcript_id AT2G29045.1  
At2g29050	chr2:012478245	0.0	W/12478245-12478576,12478852-12479015,12479109-12479272,12479357-12479616,12479704-12479830,12479999-12480121	AT2G29050.1  CDS  gene_syn ATRBL1, Arabidopsis thaliana Rhomboid-like 1, T9I4.13, T9I4_13  gene ATRBL1  go_component Golgi apparatus|GO:0005794|16223493|IDA  product ATRBL1 (Arabidopsis thaliana Rhomboid-like 1)  note Arabidopsis thaliana Rhomboid-like 1 (ATRBL1); LOCATED IN: Golgi apparatus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: rhomboid family protein (TAIR:AT3G53780.2); Has 4293 Blast hits to 4293 proteins in 1057 species: Archae - 98; Bacteria - 2273; Metazoa - 503; Fungi - 104; Plants - 214; Viruses - 0; Other Eukaryotes - 1101 (source: NCBI BLink).  protein_id AT2G29050.1p  transcript_id AT2G29050.1  protein_id AT2G29050.1p  transcript_id AT2G29050.1  
At2g29050	chr2:012478245	0.0	W/12478245-12478576,12478852-12479015,12479109-12479653	AT2G29050.2  CDS  gene_syn ATRBL1, Arabidopsis thaliana Rhomboid-like 1, T9I4.13, T9I4_13  gene ATRBL1  go_component Golgi apparatus|GO:0005794|16223493|IDA  product ATRBL1 (Arabidopsis thaliana Rhomboid-like 1)  note Arabidopsis thaliana Rhomboid-like 1 (ATRBL1); LOCATED IN: Golgi apparatus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: ATRBL2 (Arabidopsis thaliana Rhomboid-like 2); serine-type endopeptidase (TAIR:AT1G63120.1); Has 3724 Blast hits to 3724 proteins in 926 species: Archae - 85; Bacteria - 1862; Metazoa - 477; Fungi - 93; Plants - 201; Viruses - 0; Other Eukaryotes - 1006 (source: NCBI BLink).  protein_id AT2G29050.2p  transcript_id AT2G29050.2  protein_id AT2G29050.2p  transcript_id AT2G29050.2  
At2g29060	chr2:012481991	0.0	W/12481991-12484071,12485012-12486941	AT2G29060.1  CDS  gene_syn T9I4.14, T9I4_14  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product scarecrow transcription factor family protein  note scarecrow transcription factor family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: SCL14 (SCARECROW-LIKE 14); transcription factor (TAIR:AT1G07530.1); Has 2633 Blast hits to 1329 proteins in 194 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 0; Plants - 2606; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT2G29060.1p  transcript_id AT2G29060.1  protein_id AT2G29060.1p  transcript_id AT2G29060.1  
At2g29070	chr2:012487797	0.0	W/12487797-12487862,12487948-12487972,12488056-12488088,12488158-12488279,12488360-12488490,12488574-12488797,12488897-12489135,12489237-12489335	AT2G29070.2  CDS  gene_syn T9I4.15, T9I4_15  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  product ubiquitin fusion degradation UFD1 family protein  note ubiquitin fusion degradation UFD1 family protein; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin fusion degradation protein UFD1 (InterPro:IPR004854); BEST Arabidopsis thaliana protein match is: ubiquitin fusion degradation UFD1 family protein (TAIR:AT2G21270.3); Has 499 Blast hits to 499 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 134; Fungi - 134; Plants - 71; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).  protein_id AT2G29070.2p  transcript_id AT2G29070.2  protein_id AT2G29070.2p  transcript_id AT2G29070.2  
At2g29070	chr2:012488061	0.0	W/12488061-12488088,12488158-12488279,12488360-12488490,12488574-12488797,12488897-12489135,12489237-12489335	AT2G29070.1  CDS  gene_syn T9I4.15, T9I4_15  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  product ubiquitin fusion degradation UFD1 family protein  note ubiquitin fusion degradation UFD1 family protein; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin fusion degradation protein UFD1 (InterPro:IPR004854); BEST Arabidopsis thaliana protein match is: ubiquitin fusion degradation UFD1 family protein (TAIR:AT2G21270.3); Has 497 Blast hits to 497 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 133; Fungi - 134; Plants - 71; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT2G29070.1p  transcript_id AT2G29070.1  protein_id AT2G29070.1p  transcript_id AT2G29070.1  
At2g29080	chr2:012492949	0.0	C/12492949-12492999,12492628-12492850,12492477-12492542,12492245-12492378,12491656-12492135,12490810-12491574,12490495-12490722,12489911-12490393	AT2G29080.1  CDS  gene_syn FtsH protease 3, T9I4.16, T9I4_16, ftsh3  gene ftsh3  function encodes an FtsH protease that is localized to the mitochondrion  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process proteolysis|GO:0006508||IEA  go_process protein catabolic process|GO:0030163||IEA  go_component mitochondrion|GO:0005739|14630971|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function ATP-dependent peptidase activity|GO:0004176|11299370|ISS  go_function ATPase activity|GO:0016887||ISS  product ftsh3 (FtsH protease 3); ATP-dependent peptidase/ ATPase  note FtsH protease 3 (ftsh3); FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: proteolysis, protein catabolic process; LOCATED IN: mitochondrion, chloroplast thylakoid membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: ftsh10 (FtsH protease 10); ATP binding / ATPase/ metalloendopeptidase/ nucleoside-triphosphatase/ nucleotide binding / zinc ion binding (TAIR:AT1G07510.1); Has 28991 Blast hits to 27443 proteins in 1885 species: Archae - 910; Bacteria - 9394; Metazoa - 4014; Fungi - 2449; Plants - 1742; Viruses - 21; Other Eukaryotes - 10461 (source: NCBI BLink).  protein_id AT2G29080.1p  transcript_id AT2G29080.1  protein_id AT2G29080.1p  transcript_id AT2G29080.1  
At2g29090	chr2:012498842	0.0	C/12498842-12499080,12498145-12498466,12497598-12497750,12496950-12497198,12496481-12496570,12496190-12496375,12495834-12495952,12495038-12495128	AT2G29090.1  CDS  gene_syn CYP707A2, CYTOCHROME P450, FAMILY 707, SUBFAMILY A, POLYPEPTIDE 2, T9I4.17, T9I4_17  gene CYP707A2  function Encodes a protein with ABA 8 -hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. This gene predominantly accumulates in dry seeds and is up-regulated immediately following imbibition. CYP707A2 appears to play a major role in the rapid decrease in ABA levels during early seed imbibition.  go_component endomembrane system|GO:0012505||IEA  go_process response to desiccation|GO:0009269|15064374|IEP  go_process response to red or far red light|GO:0009639|17010113|IEP  go_process abscisic acid metabolic process|GO:0009687|16543410|IMP  go_process response to abscisic acid stimulus|GO:0009737|15064374|IEP  go_process drought recovery|GO:0009819|15044947|IEP  go_process response to red light|GO:0010114|17449805|IEP  go_process release of seed from dormancy|GO:0048838|15044947|IMP  go_function (+)-abscisic acid 8 -hydroxylase activity|GO:0010295|15044947|IDA  go_function (+)-abscisic acid 8 -hydroxylase activity|GO:0010295|15064374|IDA  go_function oxygen binding|GO:0019825||ISS  product CYP707A2; (+)-abscisic acid 8 -hydroxylase/ oxygen binding  note CYP707A2; FUNCTIONS IN: oxygen binding, (+)-abscisic acid 8 -hydroxylase activity; INVOLVED IN: in 7 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP707A3; (+)-abscisic acid 8 -hydroxylase/ oxygen binding (TAIR:AT5G45340.1); Has 25507 Blast hits to 25400 proteins in 1367 species: Archae - 51; Bacteria - 4634; Metazoa - 10101; Fungi - 3945; Plants - 4927; Viruses - 6; Other Eukaryotes - 1843 (source: NCBI BLink).  protein_id AT2G29090.1p  transcript_id AT2G29090.1  protein_id AT2G29090.1p  transcript_id AT2G29090.1  
At2g29100	chr2:012504657	0.0	C/12504657-12504912,12502746-12504031,12502302-12502614,12501742-12502145,12501092-12501655	AT2G29100.1  CDS  gene_syn ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.9, ATGLR2.9, GLR2.9, GLUTAMATE RECEPTOR 2.9, T9I4.18, T9I4_18  gene ATGLR2.9  function member of Putative ligand-gated ion channel subunit family  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process cellular calcium ion homeostasis|GO:0006874|11379626|NAS  go_process response to light stimulus|GO:0009416|11379626|NAS  go_function intracellular ligand-gated ion channel activity|GO:0005217||ISS  product ATGLR2.9; intracellular ligand-gated ion channel  note ATGLR2.9; FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: ATGLR2.8; intracellular ligand-gated ion channel (TAIR:AT2G29110.1); Has 4051 Blast hits to 3962 proteins in 330 species: Archae - 36; Bacteria - 468; Metazoa - 3079; Fungi - 0; Plants - 313; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink).  protein_id AT2G29100.1p  transcript_id AT2G29100.1  protein_id AT2G29100.1p  transcript_id AT2G29100.1  
At2g29110	chr2:012510288	0.0	C/12510288-12510552,12508587-12509896,12508119-12508431,12507545-12507939,12506880-12507440	AT2G29110.1  CDS  gene_syn ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.8, ATGLR2.8, GLR2.8, T9I4.19, T9I4_19  gene ATGLR2.8  function member of Putative ligand-gated ion channel subunit family  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process cellular calcium ion homeostasis|GO:0006874|11379626|NAS  go_process response to light stimulus|GO:0009416|11379626|NAS  go_function intracellular ligand-gated ion channel activity|GO:0005217||ISS  product ATGLR2.8; intracellular ligand-gated ion channel  note ATGLR2.8; FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: ATGLR2.9; intracellular ligand-gated ion channel (TAIR:AT2G29100.1); Has 4091 Blast hits to 4003 proteins in 351 species: Archae - 48; Bacteria - 490; Metazoa - 3032; Fungi - 0; Plants - 319; Viruses - 0; Other Eukaryotes - 202 (source: NCBI BLink).  protein_id AT2G29110.1p  transcript_id AT2G29110.1  protein_id AT2G29110.1p  transcript_id AT2G29110.1  
At2g29120	chr2:012515611	0.0	C/12515611-12515893,12513280-12514592,12512860-12513166,12512145-12512539,12511479-12512039	AT2G29120.1  CDS  gene_syn ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.7, ATGLR2.7, GLR2.7, GLUTAMATE RECEPTOR 2.7, T9I4.20, T9I4_20  gene ATGLR2.7  function member of Putative ligand-gated ion channel subunit family  go_component vacuole|GO:0005773|15539469|IDA  go_process cellular calcium ion homeostasis|GO:0006874|11379626|NAS  go_process response to light stimulus|GO:0009416|11379626|NAS  go_function intracellular ligand-gated ion channel activity|GO:0005217||ISS  product ATGLR2.7; intracellular ligand-gated ion channel  note ATGLR2.7; FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: vacuole; EXPRESSED IN: stem, leaf whorl, cotyledon, stamen, leaf; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, LP.10 ten leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: ATGLR2.8; intracellular ligand-gated ion channel (TAIR:AT2G29110.1); Has 4036 Blast hits to 3968 proteins in 364 species: Archae - 55; Bacteria - 541; Metazoa - 2841; Fungi - 0; Plants - 313; Viruses - 0; Other Eukaryotes - 286 (source: NCBI BLink).  protein_id AT2G29120.1p  transcript_id AT2G29120.1  protein_id AT2G29120.1p  transcript_id AT2G29120.1  
At2g29125	chr2:012523472	0.0	W/12523472-12523819	AT2G29125.1  CDS  gene_syn DEVIL 13, DVL13, ROTUNDIFOLIA LIKE 2, RTFL2  gene RTFL2  go_component chloroplast|GO:0009507||IEA  go_process shoot development|GO:0048367|14871303|ISS  go_function molecular_function|GO:0003674||ND  product RTFL2 (ROTUNDIFOLIA LIKE 2)  note ROTUNDIFOLIA LIKE 2 (RTFL2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: shoot development; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); BEST Arabidopsis thaliana protein match is: RTFL3 (ROTUNDIFOLIA LIKE 3) (TAIR:AT1G07490.1); Has 17910 Blast hits to 1778 proteins in 227 species: Archae - 2; Bacteria - 726; Metazoa - 4360; Fungi - 1380; Plants - 139; Viruses - 25; Other Eukaryotes - 11278 (source: NCBI BLink).  protein_id AT2G29125.1p  transcript_id AT2G29125.1  protein_id AT2G29125.1p  transcript_id AT2G29125.1  
At2g29130	chr2:012527595	0.0	C/12527595-12527699,12527324-12527475,12526967-12527211,12526521-12526649,12525474-12526433,12525189-12525319	AT2G29130.1  CDS  gene_syn LAC2, T9I4.21, T9I4_21, laccase 2  gene LAC2  function putative laccase, knockout mutant had reduced root elongation under PEG-induced dehydration  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process response to water deprivation|GO:0009414|16804053|IEP  go_process response to water deprivation|GO:0009414|16804053|IMP  go_function laccase activity|GO:0008471|15940465|ISS  product LAC2 (laccase 2); laccase  note laccase 2 (LAC2); FUNCTIONS IN: laccase activity; INVOLVED IN: response to water deprivation; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: LAC17 (laccase 17); laccase (TAIR:AT5G60020.1); Has 6671 Blast hits to 5561 proteins in 921 species: Archae - 18; Bacteria - 2413; Metazoa - 465; Fungi - 2532; Plants - 890; Viruses - 0; Other Eukaryotes - 353 (source: NCBI BLink).  protein_id AT2G29130.1p  transcript_id AT2G29130.1  protein_id AT2G29130.1p  transcript_id AT2G29130.1  
At2g29140	chr2:012531392	0.0	W/12531392-12531985,12532094-12533403,12533487-12533628,12533727-12533834,12533927-12534139,12534225-12534335,12534414-12534608,12534699-12534873,12535014-12535060	AT2G29140.1  CDS  gene_syn APUM3, Arabidopsis Pumilio 3, F16P2.48, F16P2_48  gene APUM3  go_component plasma membrane|GO:0005886|17317660|IDA  go_function RNA binding|GO:0003723||IEA  go_function binding|GO:0005488||IEA  go_function RNA binding|GO:0003723||ISS  product APUM3 (Arabidopsis Pumilio 3); RNA binding / binding  note Arabidopsis Pumilio 3 (APUM3); FUNCTIONS IN: RNA binding, binding; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Nucleic acid binding NABP (InterPro:IPR012940), Pumilio RNA-binding region (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: APUM1 (Arabidopsis Pumilio 1); RNA binding / binding (TAIR:AT2G29200.1); Has 2769 Blast hits to 1430 proteins in 176 species: Archae - 0; Bacteria - 6; Metazoa - 701; Fungi - 894; Plants - 436; Viruses - 0; Other Eukaryotes - 732 (source: NCBI BLink).  protein_id AT2G29140.1p  transcript_id AT2G29140.1  protein_id AT2G29140.1p  transcript_id AT2G29140.1  
At2g29150	chr2:012536873	0.0	C/12536873-12536964,12536489-12536696,12536190-12536403,12536002-12536108,12535715-12535900	AT2G29150.1  CDS  gene_syn F16P2.47, F16P2_47  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product tropinone reductase, putative / tropine dehydrogenase, putative  note tropinone reductase, putative / tropine dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: tropinone reductase, putative / tropine dehydrogenase, putative (TAIR:AT2G29360.1); Has 86781 Blast hits to 86532 proteins in 2256 species: Archae - 480; Bacteria - 47051; Metazoa - 5334; Fungi - 4455; Plants - 1764; Viruses - 5; Other Eukaryotes - 27692 (source: NCBI BLink).  protein_id AT2G29150.1p  transcript_id AT2G29150.1  protein_id AT2G29150.1p  transcript_id AT2G29150.1  
At2g29160	chr2:012537251	0.0	C/12537251-12539334	AT2G29160.1  pseudogenic_transcript  pseudo  gene_syn F16P2.46  note pseudogene, similar to tropinone reductase I, blastp match of 60% identity and 2.5e-39 P-value to GP|18138053|emb|CAD20555.1||AJ427397 tropinone reductase I {Calystegia sepium}  
At2g29165	chr2:012539812	0.0	C/12539812-12541464	AT2G29165.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 3.9e-35 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At2g29170	chr2:012542189	0.0	C/12542189-12542280,12541864-12542095	AT2G29170.1  CDS  gene_syn F16P2.45, F16P2_45  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein / tropinone reductase, putative  note short-chain dehydrogenase/reductase (SDR) family protein / tropinone reductase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: tropinone reductase, putative / tropine dehydrogenase, putative (TAIR:AT2G29150.1); Has 7126 Blast hits to 7122 proteins in 1054 species: Archae - 84; Bacteria - 4158; Metazoa - 525; Fungi - 250; Plants - 413; Viruses - 0; Other Eukaryotes - 1696 (source: NCBI BLink).  protein_id AT2G29170.1p  transcript_id AT2G29170.1  protein_id AT2G29170.1p  transcript_id AT2G29170.1  
At2g29180	chr2:012543081	0.0	W/12543081-12543410,12543523-12543702	AT2G29180.1  CDS  gene_syn F16P2.44, F16P2_44  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 22 Blast hits to 21 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G29180.1p  transcript_id AT2G29180.1  protein_id AT2G29180.1p  transcript_id AT2G29180.1  
At2g29190	chr2:012547448	0.0	C/12547448-12548071,12545963-12547266,12545738-12545879,12545549-12545656,12545220-12545432,12545025-12545135,12544752-12544946,12544492-12544666,12544260-12544306	AT2G29190.1  CDS  gene_syn APUM2, Arabidopsis Pumilio 2, F16P2.43, F16P2_43  gene APUM2  go_function RNA binding|GO:0003723||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product APUM2 (Arabidopsis Pumilio 2); RNA binding / binding  note Arabidopsis Pumilio 2 (APUM2); FUNCTIONS IN: RNA binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid binding NABP (InterPro:IPR012940), Pumilio RNA-binding region (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: APUM1 (Arabidopsis Pumilio 1); RNA binding / binding (TAIR:AT2G29200.1); Has 2675 Blast hits to 1409 proteins in 174 species: Archae - 0; Bacteria - 4; Metazoa - 650; Fungi - 873; Plants - 414; Viruses - 0; Other Eukaryotes - 734 (source: NCBI BLink).  protein_id AT2G29190.1p  transcript_id AT2G29190.1  protein_id AT2G29190.1p  transcript_id AT2G29190.1  
At2g29200	chr2:012552586	0.0	C/12552586-12553185,12551120-12552435,12550886-12551027,12550688-12550795,12550385-12550597,12550189-12550299,12549914-12550108,12549657-12549831,12549483-12549529	AT2G29200.1  CDS  gene_syn APUM1, Arabidopsis Pumilio 1, F16P2.42, F16P2_42  gene APUM1  go_function RNA binding|GO:0003723||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_function RNA binding|GO:0003723||ISS  product APUM1 (Arabidopsis Pumilio 1); RNA binding / binding  note Arabidopsis Pumilio 1 (APUM1); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Nucleic acid binding NABP (InterPro:IPR012940), Pumilio RNA-binding region (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: APUM2 (Arabidopsis Pumilio 2); RNA binding / binding (TAIR:AT2G29190.1); Has 2707 Blast hits to 1386 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 686; Fungi - 844; Plants - 448; Viruses - 0; Other Eukaryotes - 729 (source: NCBI BLink).  protein_id AT2G29200.1p  transcript_id AT2G29200.1  protein_id AT2G29200.1p  transcript_id AT2G29200.1  
At2g29210	chr2:012558156	0.0	W/12558156-12558176,12558296-12558385,12558548-12558670,12558825-12558992,12559081-12559155,12559292-12559404,12559724-12559771,12559850-12559906,12560043-12561305,12561397-12561519,12561613-12562168	AT2G29210.1  CDS  gene_syn F16P2.41, F16P2_41  go_process RNA splicing|GO:0008380|16807317|NAS  product splicing factor PWI domain-containing protein  note splicing factor PWI domain-containing protein; INVOLVED IN: RNA splicing; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor PWI (InterPro:IPR002483); Has 142243 Blast hits to 70953 proteins in 1843 species: Archae - 141; Bacteria - 12024; Metazoa - 66362; Fungi - 19459; Plants - 11660; Viruses - 2650; Other Eukaryotes - 29947 (source: NCBI BLink).  protein_id AT2G29210.1p  transcript_id AT2G29210.1  protein_id AT2G29210.1p  transcript_id AT2G29210.1  
At2g29220	chr2:012562781	0.0	C/12562781-12564664	AT2G29220.1  CDS  gene_syn F16P2.40, F16P2_40  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product lectin protein kinase, putative  note lectin protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: lectin protein kinase, putative (TAIR:AT2G29250.1); Has 55661 Blast hits to 54911 proteins in 1560 species: Archae - 22; Bacteria - 2960; Metazoa - 24203; Fungi - 3640; Plants - 16189; Viruses - 192; Other Eukaryotes - 8455 (source: NCBI BLink).  protein_id AT2G29220.1p  transcript_id AT2G29220.1  protein_id AT2G29220.1p  transcript_id AT2G29220.1  
At2g29230	chr2:012568018	0.0	W/12568018-12571481	AT2G29230.1  mRNA_TE_gene  pseudo  gene_syn F16P2.39, F16P2_39  note Transposable element gene, Mutator-like transposase family, has a 5.0e-87 P-value blast match to Q9SLM0 /314-478 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At2g29240	chr2:012573371	0.0	C/12573371-12577812	AT2G29240.1  mRNA_TE_gene  pseudo  gene_syn F16P2.38, F16P2_38  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G08740.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G26530.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G44890.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At2g29250	chr2:012578909	0.0	C/12578909-12580780	AT2G29250.1  CDS  gene_syn F16P2.37, F16P2_37  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product lectin protein kinase, putative  note lectin protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: lectin protein kinase, putative (TAIR:AT2G29220.1); Has 46614 Blast hits to 46120 proteins in 1381 species: Archae - 19; Bacteria - 2529; Metazoa - 19207; Fungi - 2509; Plants - 15724; Viruses - 144; Other Eukaryotes - 6482 (source: NCBI BLink).  protein_id AT2G29250.1p  transcript_id AT2G29250.1  protein_id AT2G29250.1p  transcript_id AT2G29250.1  
At2g29260	chr2:012582523	0.0	W/12582523-12582770,12582853-12583060,12583176-12583392,12583515-12583621,12583766-12583954	AT2G29260.1  CDS  gene_syn F16P2.36, F16P2_36  go_component chloroplast|GO:0009507||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product tropinone reductase, putative / tropine dehydrogenase, putative  note tropinone reductase, putative / tropine dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: tropinone reductase, putative / tropine dehydrogenase, putative (TAIR:AT5G06060.1); Has 85048 Blast hits to 84861 proteins in 2242 species: Archae - 470; Bacteria - 46269; Metazoa - 5036; Fungi - 4269; Plants - 1626; Viruses - 5; Other Eukaryotes - 27373 (source: NCBI BLink).  protein_id AT2G29260.1p  transcript_id AT2G29260.1  protein_id AT2G29260.1p  transcript_id AT2G29260.1  
At2g29263	chr2:012584243	0.0	C/12584243-12584428	AT2G29263.1  CDS  go_component mitochondrion|GO:0005739||IEA  product unknown protein  note unknown protein; LOCATED IN: mitochondrion; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G29263.1p  transcript_id AT2G29263.1  protein_id AT2G29263.1p  transcript_id AT2G29263.1  
At2g29270	chr2:012584502	0.0	W/12584502-12585096	AT2G29270.1  pseudogenic_transcript  pseudo  gene_syn F16P2.35  note pseudogene, similar to short chain alcohol dehydrogenase-like protein, non-consensus CT donor splice site at exon 1; blastp match of 57% identity and 7.4e-29 P-value to GP|28849236|dbj|BAC65128.1||AB104856 short chain alcohol dehydrogenase-like protein {Daucus carota}  
At2g29280	chr2:012585889	0.0	W/12585889-12586330	AT2G29280.1  pseudogenic_transcript  pseudo  gene_syn F16P2.34  note pseudogene, tropinone reductase, blastp match of 46% identity and 2.4e-09 P-value to SP|P50165|TRNH_DATST Tropinone reductase homolog (EC 1.1.1.-) (P29X). (Jimsonweed, Common thornapple) {Datura stramonium}  
At2g29290	chr2:012586498	0.0	W/12586498-12586562,12586657-12586864,12587000-12587216,12587297-12587403,12587493-12587684	AT2G29290.1  CDS  gene_syn F16P2.33, F16P2_33  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product tropinone reductase, putative / tropine dehydrogenase, putative  note tropinone reductase, putative / tropine dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: SAG13; alcohol dehydrogenase/ oxidoreductase (TAIR:AT2G29350.1); Has 81879 Blast hits to 81648 proteins in 2227 species: Archae - 466; Bacteria - 45108; Metazoa - 4840; Fungi - 4007; Plants - 1549; Viruses - 5; Other Eukaryotes - 25904 (source: NCBI BLink).  protein_id AT2G29290.1p  transcript_id AT2G29290.1  protein_id AT2G29290.1p  transcript_id AT2G29290.1  
At2g29290	chr2:012586498	0.0	W/12586498-12586562,12586657-12586864,12587000-12587216,12587297-12587403,12587493-12587684	AT2G29290.2  CDS  gene_syn F16P2.33, F16P2_33  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product tropinone reductase, putative / tropine dehydrogenase, putative  note tropinone reductase, putative / tropine dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: SAG13; alcohol dehydrogenase/ oxidoreductase (TAIR:AT2G29350.1); Has 81879 Blast hits to 81648 proteins in 2227 species: Archae - 466; Bacteria - 45108; Metazoa - 4840; Fungi - 4007; Plants - 1549; Viruses - 5; Other Eukaryotes - 25904 (source: NCBI BLink).  protein_id AT2G29290.2p  transcript_id AT2G29290.2  protein_id AT2G29290.2p  transcript_id AT2G29290.2  
At2g29300	chr2:012588214	0.0	W/12588214-12588278,12588370-12588577,12588665-12588884,12588971-12589077,12589181-12589372	AT2G29300.1  CDS  gene_syn F16P2.32, F16P2_32  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product tropinone reductase, putative / tropine dehydrogenase, putative  note tropinone reductase, putative / tropine dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: tropinone reductase, putative / tropine dehydrogenase, putative (TAIR:AT2G29320.1); Has 77732 Blast hits to 77581 proteins in 2156 species: Archae - 464; Bacteria - 43191; Metazoa - 4073; Fungi - 3687; Plants - 1470; Viruses - 5; Other Eukaryotes - 24842 (source: NCBI BLink).  protein_id AT2G29300.1p  transcript_id AT2G29300.1  protein_id AT2G29300.1p  transcript_id AT2G29300.1  
At2g29310	chr2:012590068	0.0	W/12590068-12590132,12590233-12590440,12590541-12590757,12590855-12590961,12591069-12591260	AT2G29310.1  CDS  gene_syn F16P2.31, F16P2_31  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product tropinone reductase, putative / tropine dehydrogenase, putative  note tropinone reductase, putative / tropine dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: tropinone reductase, putative / tropine dehydrogenase, putative (TAIR:AT2G29300.1); Has 77598 Blast hits to 77460 proteins in 2156 species: Archae - 462; Bacteria - 43120; Metazoa - 4057; Fungi - 3681; Plants - 1455; Viruses - 5; Other Eukaryotes - 24818 (source: NCBI BLink).  protein_id AT2G29310.1p  transcript_id AT2G29310.1  protein_id AT2G29310.1p  transcript_id AT2G29310.1  
At2g29320	chr2:012592180	0.0	W/12592180-12592262,12592364-12592571,12592659-12592878,12592989-12593095,12593186-12593377	AT2G29320.1  CDS  gene_syn F16P2.30, F16P2_30  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product tropinone reductase, putative / tropine dehydrogenase, putative  note tropinone reductase, putative / tropine dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: tropinone reductase, putative / tropine dehydrogenase, putative (TAIR:AT2G29300.1); Has 78520 Blast hits to 78365 proteins in 2163 species: Archae - 465; Bacteria - 43431; Metazoa - 4150; Fungi - 3727; Plants - 1455; Viruses - 5; Other Eukaryotes - 25287 (source: NCBI BLink).  protein_id AT2G29320.1p  transcript_id AT2G29320.1  protein_id AT2G29320.1p  transcript_id AT2G29320.1  
At2g29330	chr2:012594604	0.0	W/12594604-12594668,12594780-12594987,12595076-12595292,12595804-12595910,12596011-12596196	AT2G29330.1  CDS  gene_syn F16P2.29, F16P2_29, TRI, tropinone reductase  gene TRI  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product TRI (tropinone reductase); binding / catalytic/ oxidoreductase  note tropinone reductase (TRI); FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: embryo, hypocotyl, root; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: tropinone reductase, putative / tropine dehydrogenase, putative (TAIR:AT2G30670.1); Has 78832 Blast hits to 78681 proteins in 2184 species: Archae - 458; Bacteria - 43761; Metazoa - 3977; Fungi - 3833; Plants - 1451; Viruses - 5; Other Eukaryotes - 25347 (source: NCBI BLink).  protein_id AT2G29330.1p  transcript_id AT2G29330.1  protein_id AT2G29330.1p  transcript_id AT2G29330.1  
At2g29340	chr2:012597131	0.0	W/12597131-12597195,12597302-12597509,12597596-12597812,12597910-12598016,12598115-12598300,12598869-12599009	AT2G29340.1  CDS  gene_syn F16P2.28, F16P2_28  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: tropinone reductase, putative / tropine dehydrogenase, putative (TAIR:AT2G29320.1); Has 81586 Blast hits to 81153 proteins in 2199 species: Archae - 472; Bacteria - 44779; Metazoa - 4524; Fungi - 4049; Plants - 1530; Viruses - 5; Other Eukaryotes - 26227 (source: NCBI BLink).  protein_id AT2G29340.1p  transcript_id AT2G29340.1  protein_id AT2G29340.1p  transcript_id AT2G29340.1  
At2g29340	chr2:012597131	0.0	W/12597131-12597195,12597302-12597509,12597596-12597812,12597910-12598016,12598115-12598306	AT2G29340.2  CDS  gene_syn F16P2.28, F16P2_28  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: tropinone reductase, putative / tropine dehydrogenase, putative (TAIR:AT2G29320.1); Has 81341 Blast hits to 81123 proteins in 2198 species: Archae - 472; Bacteria - 44593; Metazoa - 4515; Fungi - 4047; Plants - 1510; Viruses - 5; Other Eukaryotes - 26199 (source: NCBI BLink).  protein_id AT2G29340.2p  transcript_id AT2G29340.2  protein_id AT2G29340.2p  transcript_id AT2G29340.2  
At2g29340	chr2:012597131	0.0	W/12597131-12597195,12597302-12597509,12597596-12597812,12597910-12598028	AT2G29340.3  CDS  gene_syn F16P2.28, F16P2_28  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: tropinone reductase, putative / tropine dehydrogenase, putative (TAIR:AT2G29300.1); Has 71091 Blast hits to 70893 proteins in 2153 species: Archae - 430; Bacteria - 41015; Metazoa - 4357; Fungi - 3740; Plants - 1400; Viruses - 2; Other Eukaryotes - 20147 (source: NCBI BLink).  protein_id AT2G29340.3p  transcript_id AT2G29340.3  protein_id AT2G29340.3p  transcript_id AT2G29340.3  
At2g29350	chr2:012601036	0.0	W/12601036-12601124,12601230-12601437,12601534-12601750,12601829-12601935,12602034-12602222	AT2G29350.1  CDS  gene_syn CI0011, F16P2.27, F16P2_27, SAG13, SENESCENCE-ASSOCIATED GENE 13  gene SAG13  function senescence-associated gene SAG13 encoding a short-chain alcohol dehydrogenase  go_process aging|GO:0007568|10444084|IEP  go_function alcohol dehydrogenase activity|GO:0004022|11850411|TAS  go_function oxidoreductase activity|GO:0016491||ISS  product SAG13; alcohol dehydrogenase/ oxidoreductase  note SAG13; FUNCTIONS IN: alcohol dehydrogenase activity, oxidoreductase activity; INVOLVED IN: aging; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: tropinone reductase, putative / tropine dehydrogenase, putative (TAIR:AT2G29290.2); Has 83702 Blast hits to 83428 proteins in 2243 species: Archae - 470; Bacteria - 46050; Metazoa - 5127; Fungi - 4230; Plants - 1717; Viruses - 5; Other Eukaryotes - 26103 (source: NCBI BLink).  protein_id AT2G29350.1p  transcript_id AT2G29350.1  protein_id AT2G29350.1p  transcript_id AT2G29350.1  
At2g29350	chr2:012601036	0.0	W/12601036-12601124,12601230-12601437,12601534-12601750,12601829-12601992	AT2G29350.2  CDS  gene_syn CI0011, F16P2.27, F16P2_27, SAG13, SENESCENCE-ASSOCIATED GENE 13  gene SAG13  function senescence-associated gene SAG13 encoding a short-chain alcohol dehydrogenase  go_process aging|GO:0007568|10444084|IEP  go_function alcohol dehydrogenase activity|GO:0004022|11850411|TAS  go_function oxidoreductase activity|GO:0016491||ISS  product SAG13; alcohol dehydrogenase/ oxidoreductase  note SAG13; FUNCTIONS IN: alcohol dehydrogenase activity, oxidoreductase activity; INVOLVED IN: aging; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: tropinone reductase, putative / tropine dehydrogenase, putative (TAIR:AT2G29290.2); Has 74739 Blast hits to 74479 proteins in 2207 species: Archae - 430; Bacteria - 42797; Metazoa - 5024; Fungi - 3982; Plants - 1629; Viruses - 2; Other Eukaryotes - 20875 (source: NCBI BLink).  protein_id AT2G29350.2p  transcript_id AT2G29350.2  protein_id AT2G29350.2p  transcript_id AT2G29350.2  
At2g29350	chr2:012601255	0.0	W/12601255-12601437,12601534-12601750,12601829-12601935,12602034-12602222	AT2G29350.3  CDS  gene_syn CI0011, F16P2.27, F16P2_27, SAG13, SENESCENCE-ASSOCIATED GENE 13  gene SAG13  function senescence-associated gene SAG13 encoding a short-chain alcohol dehydrogenase  go_process aging|GO:0007568|10444084|IEP  go_function alcohol dehydrogenase activity|GO:0004022|11850411|TAS  go_function oxidoreductase activity|GO:0016491||ISS  product SAG13; alcohol dehydrogenase/ oxidoreductase  note SAG13; FUNCTIONS IN: alcohol dehydrogenase activity, oxidoreductase activity; INVOLVED IN: aging; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: tropinone reductase, putative / tropine dehydrogenase, putative (TAIR:AT2G29290.2); Has 66898 Blast hits to 66830 proteins in 2104 species: Archae - 417; Bacteria - 38734; Metazoa - 2889; Fungi - 2987; Plants - 1320; Viruses - 5; Other Eukaryotes - 20546 (source: NCBI BLink).  protein_id AT2G29350.3p  transcript_id AT2G29350.3  protein_id AT2G29350.3p  transcript_id AT2G29350.3  
At2g29360	chr2:012603849	0.0	W/12603849-12603940,12604143-12604350,12604435-12604651,12604731-12604837,12604930-12605121	AT2G29360.1  CDS  gene_syn F16P2.26, F16P2_26  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product tropinone reductase, putative / tropine dehydrogenase, putative  note tropinone reductase, putative / tropine dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: tropinone reductase, putative / tropine dehydrogenase, putative (TAIR:AT2G29150.1); Has 83809 Blast hits to 83613 proteins in 2239 species: Archae - 475; Bacteria - 45716; Metazoa - 5149; Fungi - 4359; Plants - 1662; Viruses - 5; Other Eukaryotes - 26443 (source: NCBI BLink).  protein_id AT2G29360.1p  transcript_id AT2G29360.1  protein_id AT2G29360.1p  transcript_id AT2G29360.1  
At2g29370	chr2:012606059	0.0	W/12606059-12606150,12606375-12606582,12606689-12606905,12606984-12607090,12607181-12607363	AT2G29370.1  CDS  gene_syn F16P2.25, F16P2_25  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product tropinone reductase, putative / tropine dehydrogenase, putative  note tropinone reductase, putative / tropine dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: tropinone reductase, putative / tropine dehydrogenase, putative (TAIR:AT2G29360.1); Has 84442 Blast hits to 84117 proteins in 2245 species: Archae - 476; Bacteria - 46474; Metazoa - 4982; Fungi - 4366; Plants - 1613; Viruses - 5; Other Eukaryotes - 26526 (source: NCBI BLink).  protein_id AT2G29370.1p  transcript_id AT2G29370.1  protein_id AT2G29370.1p  transcript_id AT2G29370.1  
At2g29380	chr2:012608855	0.0	W/12608855-12609223,12609312-12609629,12609723-12610124	AT2G29380.1  CDS  gene_syn F16P2.24, F16P2_24  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT1G07430.1); Has 4463 Blast hits to 4442 proteins in 358 species: Archae - 0; Bacteria - 258; Metazoa - 1341; Fungi - 537; Plants - 1336; Viruses - 7; Other Eukaryotes - 984 (source: NCBI BLink).  protein_id AT2G29380.1p  transcript_id AT2G29380.1  protein_id AT2G29380.1p  transcript_id AT2G29380.1  
At2g29390	chr2:012611667	0.0	C/12611667-12611731,12611381-12611500,12611073-12611285,12610897-12610977,12610758-12610812	AT2G29390.4  CDS  gene_syn ATSMO2, F16P2.23, F16P2_23, SMO2-2, STEROL 4-ALPHA-METHYL-OXIDASE 2, STEROL 4-ALPHA-METHYL-OXIDASE 2-2  gene SMO2-2  function Encodes a sterol 4-alpha-methyl-oxidase, specifically a 4-alpha-methyl-delta-7-sterol-4alpha-methyl-oxidase.  go_component membrane|GO:0016020|14653780|TAS  go_process sterol biosynthetic process|GO:0016126|14653780|IGI  go_function C-4 methylsterol oxidase activity|GO:0000254|11707264|IGI  go_function C-4 methylsterol oxidase activity|GO:0000254|14653780|IGI  go_function 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase activity|GO:0080065|14653780|IGI  product SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2); 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase  note SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2); 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1); 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase (TAIR:AT1G07420.2); Has 2018 Blast hits to 2015 proteins in 329 species: Archae - 0; Bacteria - 401; Metazoa - 390; Fungi - 446; Plants - 266; Viruses - 2; Other Eukaryotes - 513 (source: NCBI BLink).  protein_id AT2G29390.4p  transcript_id AT2G29390.4  protein_id AT2G29390.4p  transcript_id AT2G29390.4  
At2g29390	chr2:012611885	0.0	C/12611885-12611929,12611667-12611812,12611381-12611500,12611073-12611285,12610897-12610977,12610758-12610812	AT2G29390.5  CDS  gene_syn ATSMO2, F16P2.23, F16P2_23, SMO2-2, STEROL 4-ALPHA-METHYL-OXIDASE 2, STEROL 4-ALPHA-METHYL-OXIDASE 2-2  gene SMO2-2  function Encodes a sterol 4-alpha-methyl-oxidase, specifically a 4-alpha-methyl-delta-7-sterol-4alpha-methyl-oxidase.  go_component membrane|GO:0016020|14653780|TAS  go_process sterol biosynthetic process|GO:0016126|14653780|IGI  go_function C-4 methylsterol oxidase activity|GO:0000254|11707264|IGI  go_function C-4 methylsterol oxidase activity|GO:0000254|14653780|IGI  go_function 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase activity|GO:0080065|14653780|IGI  product SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2); 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase  note SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2); 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1); 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase (TAIR:AT1G07420.2); Has 2071 Blast hits to 2068 proteins in 347 species: Archae - 0; Bacteria - 439; Metazoa - 390; Fungi - 447; Plants - 266; Viruses - 2; Other Eukaryotes - 527 (source: NCBI BLink).  protein_id AT2G29390.5p  transcript_id AT2G29390.5  protein_id AT2G29390.5p  transcript_id AT2G29390.5  
At2g29390	chr2:012612003	0.0	C/12612003-12612149,12611667-12611812,12611381-12611500,12611073-12611285,12610897-12610977,12610758-12610812	AT2G29390.3  CDS  gene_syn ATSMO2, F16P2.23, F16P2_23, SMO2-2, STEROL 4-ALPHA-METHYL-OXIDASE 2, STEROL 4-ALPHA-METHYL-OXIDASE 2-2  gene SMO2-2  function Encodes a sterol 4-alpha-methyl-oxidase, specifically a 4-alpha-methyl-delta-7-sterol-4alpha-methyl-oxidase.  go_component membrane|GO:0016020|14653780|TAS  go_process sterol biosynthetic process|GO:0016126|14653780|IGI  go_function C-4 methylsterol oxidase activity|GO:0000254|11707264|IGI  go_function C-4 methylsterol oxidase activity|GO:0000254|14653780|IGI  go_function 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase activity|GO:0080065|14653780|IGI  product SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2); 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase  note SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2); 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1); 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase (TAIR:AT1G07420.1); Has 2084 Blast hits to 2081 proteins in 349 species: Archae - 0; Bacteria - 443; Metazoa - 393; Fungi - 447; Plants - 268; Viruses - 2; Other Eukaryotes - 531 (source: NCBI BLink).  protein_id AT2G29390.3p  transcript_id AT2G29390.3  protein_id AT2G29390.3p  transcript_id AT2G29390.3  
At2g29390	chr2:012612770	0.0	C/12612770-12612799,12612003-12612140,12611667-12611812,12611381-12611500,12611073-12611285,12610897-12610977,12610758-12610812	AT2G29390.2  CDS  gene_syn ATSMO2, F16P2.23, F16P2_23, SMO2-2, STEROL 4-ALPHA-METHYL-OXIDASE 2, STEROL 4-ALPHA-METHYL-OXIDASE 2-2  gene SMO2-2  function Encodes a sterol 4-alpha-methyl-oxidase, specifically a 4-alpha-methyl-delta-7-sterol-4alpha-methyl-oxidase.  go_component membrane|GO:0016020|14653780|TAS  go_process sterol biosynthetic process|GO:0016126|14653780|IGI  go_function C-4 methylsterol oxidase activity|GO:0000254|11707264|IGI  go_function C-4 methylsterol oxidase activity|GO:0000254|14653780|IGI  go_function 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase activity|GO:0080065|14653780|IGI  product SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2); 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase  note SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2); 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1); 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase (TAIR:AT1G07420.1); Has 2085 Blast hits to 2082 proteins in 349 species: Archae - 0; Bacteria - 443; Metazoa - 393; Fungi - 449; Plants - 268; Viruses - 2; Other Eukaryotes - 530 (source: NCBI BLink).  protein_id AT2G29390.2p  transcript_id AT2G29390.2  protein_id AT2G29390.2p  transcript_id AT2G29390.2  
At2g29390	chr2:012612770	0.0	C/12612770-12612799,12612003-12612140,12611667-12611812,12611381-12611500,12611073-12611285,12610897-12611013,12610758-12610812	AT2G29390.1  CDS  gene_syn ATSMO2, F16P2.23, F16P2_23, SMO2-2, STEROL 4-ALPHA-METHYL-OXIDASE 2, STEROL 4-ALPHA-METHYL-OXIDASE 2-2  gene SMO2-2  function Encodes a sterol 4-alpha-methyl-oxidase, specifically a 4-alpha-methyl-delta-7-sterol-4alpha-methyl-oxidase.  go_component membrane|GO:0016020|14653780|TAS  go_process sterol biosynthetic process|GO:0016126|14653780|IGI  go_function C-4 methylsterol oxidase activity|GO:0000254|11707264|IGI  go_function C-4 methylsterol oxidase activity|GO:0000254|14653780|IGI  go_function 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase activity|GO:0080065|14653780|IGI  product SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2); 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase  note STEROL 4-ALPHA-METHYL-OXIDASE 2-2 (SMO2-2); FUNCTIONS IN: 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase activity, C-4 methylsterol oxidase activity; INVOLVED IN: sterol biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1); 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase (TAIR:AT1G07420.1); Has 1910 Blast hits to 1907 proteins in 307 species: Archae - 0; Bacteria - 331; Metazoa - 388; Fungi - 420; Plants - 270; Viruses - 2; Other Eukaryotes - 499 (source: NCBI BLink).  protein_id AT2G29390.1p  transcript_id AT2G29390.1  protein_id AT2G29390.1p  transcript_id AT2G29390.1  
At2g29400	chr2:012615058	0.0	C/12615058-12615283,12614046-12614602,12613789-12613962	AT2G29400.1  CDS  gene_syn PP1-AT, PROTEIN PHOSPHATASE 1, TOPP1, TYPE ONE PROTEIN PHOSPHATASE 1  gene TOPP1  function Type 1 protein phosphatase, expressed in roots, rosettes and flowers  go_component protein phosphatase type 1 complex|GO:0000164|7678768|ISS  go_process protein amino acid dephosphorylation|GO:0006470|1314161|IGI  go_function protein serine/threonine phosphatase activity|GO:0004722|1314161|IGI  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1); protein serine/threonine phosphatase  note TYPE ONE PROTEIN PHOSPHATASE 1 (TOPP1); FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein phosphatase type 1 complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: TOPP2; protein serine/threonine phosphatase (TAIR:AT5G59160.3); Has 5621 Blast hits to 5486 proteins in 479 species: Archae - 49; Bacteria - 412; Metazoa - 2060; Fungi - 931; Plants - 614; Viruses - 21; Other Eukaryotes - 1534 (source: NCBI BLink).  protein_id AT2G29400.1p  transcript_id AT2G29400.1  protein_id AT2G29400.1p  transcript_id AT2G29400.1  
At2g29410	chr2:012616810	0.0	W/12616810-12617937	AT2G29410.1  CDS  gene_syn ATMTPB1, F16P2.21, F16P2_21, METAL TOLERANCE PROTEIN B1, MTPB1  gene MTPB1  function member of Zinc transporter (ZAT) family  go_component membrane|GO:0016020||IEA  go_process cation transport|GO:0006812||IEA  go_process zinc ion transport|GO:0006829||ISS  go_function zinc ion transmembrane transporter activity|GO:0005385||ISS  go_function inorganic anion transmembrane transporter activity|GO:0015103||ISS  go_function efflux transmembrane transporter activity|GO:0015562||ISS  product MTPB1 (METAL TOLERANCE PROTEIN B1); efflux transmembrane transporter/ inorganic anion transmembrane transporter/ zinc ion transmembrane transporter  note METAL TOLERANCE PROTEIN B1 (MTPB1); FUNCTIONS IN: zinc ion transmembrane transporter activity, efflux transmembrane transporter activity, inorganic anion transmembrane transporter activity; INVOLVED IN: zinc ion transport, cation transport; LOCATED IN: membrane; EXPRESSED IN: leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: MTPA2 (METAL TOLERANCE PROTEIN A2); efflux transmembrane transporter/ inorganic anion transmembrane transporter/ zinc ion transmembrane transporter (TAIR:AT3G58810.2); Has 9638 Blast hits to 6395 proteins in 1216 species: Archae - 96; Bacteria - 3333; Metazoa - 3389; Fungi - 605; Plants - 270; Viruses - 12; Other Eukaryotes - 1933 (source: NCBI BLink).  protein_id AT2G29410.1p  transcript_id AT2G29410.1  protein_id AT2G29410.1p  transcript_id AT2G29410.1  
At2g29420	chr2:012618545	0.0	C/12618545-12618871,12618111-12618467	AT2G29420.1  CDS  gene_syn ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 7, ATGSTU7, F16P2.20, F16P2_20, GLUTATHIONE S-TRANSFERASE 25, GST25  gene ATGSTU7  function Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). Induced by Salicylic acid. Independent of NPR1 for their induction by salicylic acid.  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_process response to salicylic acid stimulus|GO:0009751|16307367|IEP  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function glutathione transferase activity|GO:0004364|16307367|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTU7 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 7); glutathione transferase  note ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 7 (ATGSTU7); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: response to cyclopentenone, toxin catabolic process, response to salicylic acid stimulus; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTU4 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 4); glutathione transferase (TAIR:AT2G29460.1); Has 5905 Blast hits to 5899 proteins in 818 species: Archae - 0; Bacteria - 3057; Metazoa - 831; Fungi - 91; Plants - 1171; Viruses - 0; Other Eukaryotes - 755 (source: NCBI BLink).  protein_id AT2G29420.1p  transcript_id AT2G29420.1  protein_id AT2G29420.1p  transcript_id AT2G29420.1  
At2g29430	chr2:012619700	0.0	W/12619700-12619954	AT2G29430.1  CDS  gene_syn F16P2.19, F16P2_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF572 (InterPro:IPR007590); BEST Arabidopsis thaliana protein match is: cell cycle control protein-related (TAIR:AT1G17130.1).  protein_id AT2G29430.1p  transcript_id AT2G29430.1  protein_id AT2G29430.1p  transcript_id AT2G29430.1  
At2g29440	chr2:012620782	0.0	C/12620782-12621099,12620159-12620512	AT2G29440.1  CDS  gene_syn ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 6, ATGSTU6, F16P2.18, F16P2_18, GLUTATHIONE S-TRANSFERASE 24, GST24  gene ATGSTU6  function Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTU6 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 6); glutathione transferase  note ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 6 (ATGSTU6); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTU5 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 5); glutathione binding / glutathione transferase (TAIR:AT2G29450.1); Has 5517 Blast hits to 5511 proteins in 802 species: Archae - 0; Bacteria - 2822; Metazoa - 751; Fungi - 82; Plants - 1108; Viruses - 0; Other Eukaryotes - 754 (source: NCBI BLink).  protein_id AT2G29440.1p  transcript_id AT2G29440.1  protein_id AT2G29440.1p  transcript_id AT2G29440.1  
At2g29450	chr2:012625249	0.0	C/12625249-12625566,12624774-12625130	AT2G29450.1  CDS  gene_syn ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 1, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 5, AT103-1A, ATGSTU1, ATGSTU5, F16P2.17, F16P2_17, GLUTATHIONE S-TRANSFERASE  gene ATGSTU5  function Encodes a member of the TAU glutathione S-transferase gene family. Gene expression is induced by exposure to auxin, pathogen and herbicides. Naming convention according to Wagner et al. (2002)  go_component plasma membrane|GO:0005886|17644812|IDA  go_function glutathione binding|GO:0043295|15159623|IDA  go_component cytoplasm|GO:0005737|9165071|ISS  go_process response to oxidative stress|GO:0006979|9449849|IEP  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364|8624414|IDA  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTU5 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 5); glutathione binding / glutathione transferase  note ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 5 (ATGSTU5); FUNCTIONS IN: glutathione transferase activity, glutathione binding; INVOLVED IN: response to oxidative stress, toxin catabolic process; LOCATED IN: plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTU6 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 6); glutathione transferase (TAIR:AT2G29440.1); Has 6433 Blast hits to 6427 proteins in 849 species: Archae - 0; Bacteria - 3399; Metazoa - 872; Fungi - 108; Plants - 1147; Viruses - 0; Other Eukaryotes - 907 (source: NCBI BLink).  protein_id AT2G29450.1p  transcript_id AT2G29450.1  protein_id AT2G29450.1p  transcript_id AT2G29450.1  
At2g29452	chr2:012625854	0.0	C/12625854-12625985	AT2G29452.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G29452.1p  transcript_id AT2G29452.1  protein_id AT2G29452.1p  transcript_id AT2G29452.1  
At2g29460	chr2:012627280	0.0	C/12627280-12627600,12626689-12627042	AT2G29460.1  CDS  gene_syn ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 4, ATGSTU4, F16P2.16, F16P2_16, GLUTATHIONE S-TRANSFERASE 22, GST22  gene ATGSTU4  function Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTU4 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 4); glutathione transferase  note ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 4 (ATGSTU4); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: response to cyclopentenone, toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTU1 (GLUTATHIONE S-TRANSFERASE TAU 1); glutathione transferase (TAIR:AT2G29490.1); Has 5337 Blast hits to 5329 proteins in 793 species: Archae - 0; Bacteria - 2684; Metazoa - 801; Fungi - 119; Plants - 1079; Viruses - 0; Other Eukaryotes - 654 (source: NCBI BLink).  protein_id AT2G29460.1p  transcript_id AT2G29460.1  protein_id AT2G29460.1p  transcript_id AT2G29460.1  
At2g29470	chr2:012629167	0.0	C/12629167-12629490,12628666-12629019	AT2G29470.1  CDS  gene_syn ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 3, ATGSTU3, F16P2.15, F16P2_15, GLUTATHIONE S-TRANSFERASE 21, GST21  gene ATGSTU3  function Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTU3 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 3); glutathione transferase  note ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 3 (ATGSTU3); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTU4 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 4); glutathione transferase (TAIR:AT2G29460.1); Has 4697 Blast hits to 4691 proteins in 763 species: Archae - 0; Bacteria - 2447; Metazoa - 544; Fungi - 104; Plants - 1068; Viruses - 0; Other Eukaryotes - 534 (source: NCBI BLink).  protein_id AT2G29470.1p  transcript_id AT2G29470.1  protein_id AT2G29470.1p  transcript_id AT2G29470.1  
At2g29480	chr2:012630912	0.0	C/12630912-12631232,12630382-12630738	AT2G29480.1  CDS  gene_syn ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 2, ATGSTU2, F16P2.14, F16P2_14, GLUTATHIONE S-TRANSFERASE 20, GST20  gene ATGSTU2  function Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTU2 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 2); glutathione transferase  note ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 2 (ATGSTU2); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: root, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTU1 (GLUTATHIONE S-TRANSFERASE TAU 1); glutathione transferase (TAIR:AT2G29490.1); Has 6058 Blast hits to 6052 proteins in 852 species: Archae - 0; Bacteria - 3184; Metazoa - 756; Fungi - 99; Plants - 1164; Viruses - 0; Other Eukaryotes - 855 (source: NCBI BLink).  protein_id AT2G29480.1p  transcript_id AT2G29480.1  protein_id AT2G29480.1p  transcript_id AT2G29480.1  
At2g29490	chr2:012632040	0.0	C/12632040-12632360,12631593-12631946	AT2G29490.1  CDS  gene_syn ATGSTU1, F16P2.13, F16P2_13, GLUTATHIONE S-TRANSFERASE 19, GLUTATHIONE S-TRANSFERASE TAU 1, GST19  gene ATGSTU1  function Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTU1 (GLUTATHIONE S-TRANSFERASE TAU 1); glutathione transferase  note GLUTATHIONE S-TRANSFERASE TAU 1 (ATGSTU1); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: stem, sepal, hypocotyl, root, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTU2 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 2); glutathione transferase (TAIR:AT2G29480.1); Has 6217 Blast hits to 6211 proteins in 840 species: Archae - 0; Bacteria - 3196; Metazoa - 882; Fungi - 123; Plants - 1136; Viruses - 0; Other Eukaryotes - 880 (source: NCBI BLink).  protein_id AT2G29490.1p  transcript_id AT2G29490.1  protein_id AT2G29490.1p  transcript_id AT2G29490.1  
At2g29500	chr2:012633279	0.0	C/12633279-12633740	AT2G29500.1  CDS  gene_syn F16P2.12, F16P2_12  go_process response to oxidative stress|GO:0006979|15634198|IEP  go_process response to heat|GO:0009408|17059409|IEP  go_process response to heat|GO:0009408||ISS  go_process response to high light intensity|GO:0009644|17059409|IEP  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_process response to hydrogen peroxide|GO:0042542|17059409|IEP  go_function molecular_function|GO:0003674||ND  product 17.6 kDa class I small heat shock protein (HSP17.6B-CI)  note 17.6 kDa class I small heat shock protein (HSP17.6B-CI); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress, response to cyclopentenone, response to high light intensity, response to hydrogen peroxide, response to heat; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: 17.8 kDa class I heat shock protein (HSP17.8-CI) (TAIR:AT1G07400.1); Has 4233 Blast hits to 4233 proteins in 935 species: Archae - 103; Bacteria - 2307; Metazoa - 65; Fungi - 220; Plants - 1015; Viruses - 0; Other Eukaryotes - 523 (source: NCBI BLink).  protein_id AT2G29500.1p  transcript_id AT2G29500.1  protein_id AT2G29500.1p  transcript_id AT2G29500.1  
At2g29510	chr2:012635231	0.0	W/12635231-12637429,12637518-12637838	AT2G29510.1  CDS  gene_syn F16P2.11, F16P2_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59020.1); Has 3816 Blast hits to 613 proteins in 107 species: Archae - 0; Bacteria - 39; Metazoa - 471; Fungi - 67; Plants - 91; Viruses - 10; Other Eukaryotes - 3138 (source: NCBI BLink).  protein_id AT2G29510.1p  transcript_id AT2G29510.1  protein_id AT2G29510.1p  transcript_id AT2G29510.1  
At2g29520	chr2:012638156	0.0	C/12638156-12638228	AT2G29520.1  tRNA  gene_syn 42492.TRNA-VAL-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Val (anticodon: TAC)  transcript_id AT2G29520.1  
At2g29525	chr2:012638533	0.0	W/12638533-12638565,12638683-12638772,12638979-12639065,12639153-12639221,12639314-12639394,12639493-12639564,12639664-12639724,12639818-12639920,12640001-12640096,12640184-12640230,12640531-12640661	AT2G29525.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: phosphatidic acid phosphatase-related / PAP2-related (TAIR:AT3G54020.1); Has 352 Blast hits to 352 proteins in 78 species: Archae - 0; Bacteria - 4; Metazoa - 245; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT2G29525.1p  transcript_id AT2G29525.1  protein_id AT2G29525.1p  transcript_id AT2G29525.1  
At2g29525	chr2:012638533	0.0	W/12638533-12638565,12638683-12638772,12638979-12639065,12639153-12639221,12639314-12639394,12639493-12639564,12639664-12639724,12639818-12639920,12640001-12640096,12640184-12640247	AT2G29525.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: phosphatidic acid phosphatase-related / PAP2-related (TAIR:AT3G54020.1); Has 352 Blast hits to 352 proteins in 78 species: Archae - 0; Bacteria - 4; Metazoa - 245; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT2G29525.2p  transcript_id AT2G29525.2  protein_id AT2G29525.2p  transcript_id AT2G29525.2  
At2g29530	chr2:012642205	0.0	C/12642205-12642243,12641904-12641956,12641388-12641426,12641192-12641261,12641026-12641076	AT2G29530.1  CDS  gene_syn F16P2.9, F16P2_9, TIM10  function Encodes a small zinc finger-like protein that is a component of the mitochondrial protein import apparatus.  go_process protein targeting to mitochondrion|GO:0006626||IEA  go_process protein import into mitochondrial inner membrane|GO:0045039||IEA  go_component mitochondrion|GO:0005739|14730085|IDA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_component mitochondrial intermembrane space|GO:0005758|14730085|IDA  go_process protein targeting to mitochondrion|GO:0006626||ISS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product mitochondrial import inner membrane translocase (TIM10)  note TIM10; FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein import into mitochondrial inner membrane, protein targeting to mitochondrion; LOCATED IN: mitochondrion, mitochondrial inner membrane, mitochondrial intermembrane space; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Tim10/DDP-type (InterPro:IPR004217); Has 335 Blast hits to 335 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 138; Fungi - 115; Plants - 50; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT2G29530.1p  transcript_id AT2G29530.1  protein_id AT2G29530.1p  transcript_id AT2G29530.1  
At2g29530	chr2:012642205	0.0	C/12642205-12642243,12641904-12641956,12641388-12641426,12641192-12641261,12641026-12641076	AT2G29530.2  CDS  gene_syn F16P2.9, F16P2_9, TIM10  function Encodes a small zinc finger-like protein that is a component of the mitochondrial protein import apparatus.  go_process protein targeting to mitochondrion|GO:0006626||IEA  go_process protein import into mitochondrial inner membrane|GO:0045039||IEA  go_component mitochondrion|GO:0005739|14730085|IDA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_component mitochondrial intermembrane space|GO:0005758|14730085|IDA  go_process protein targeting to mitochondrion|GO:0006626||ISS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product mitochondrial import inner membrane translocase (TIM10)  note TIM10; FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein import into mitochondrial inner membrane, protein targeting to mitochondrion; LOCATED IN: mitochondrion, mitochondrial inner membrane, mitochondrial intermembrane space; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Tim10/DDP-type (InterPro:IPR004217); Has 335 Blast hits to 335 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 138; Fungi - 115; Plants - 50; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT2G29530.2p  transcript_id AT2G29530.2  protein_id AT2G29530.2p  transcript_id AT2G29530.2  
At2g29530	chr2:012642205	0.0	C/12642205-12642243,12641904-12641956,12641708-12641779,12641388-12641426,12641192-12641261,12641026-12641076	AT2G29530.3  CDS  gene_syn F16P2.9, F16P2_9, TIM10  function Encodes a small zinc finger-like protein that is a component of the mitochondrial protein import apparatus.  go_process protein targeting to mitochondrion|GO:0006626||IEA  go_process protein import into mitochondrial inner membrane|GO:0045039||IEA  go_component mitochondrion|GO:0005739|14730085|IDA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_component mitochondrial intermembrane space|GO:0005758|14730085|IDA  go_process protein targeting to mitochondrion|GO:0006626||ISS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product mitochondrial import inner membrane translocase (TIM10)  note mitochondrial import inner membrane translocase (TIM10); FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein import into mitochondrial inner membrane, protein targeting to mitochondrion; LOCATED IN: mitochondrion, mitochondrial inner membrane, mitochondrial intermembrane space; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Tim10/DDP-type (InterPro:IPR004217).  protein_id AT2G29530.3p  transcript_id AT2G29530.3  protein_id AT2G29530.3p  transcript_id AT2G29530.3  
At2g29540	chr2:012642727	0.0	W/12642727-12642827,12643440-12643516,12643638-12643828	AT2G29540.1  CDS  gene_syn ATRPAC14, ATRPC14, F16P2.8, F16P2_8, RNA POLYMERASE 14 KDA SUBUNIT  gene ATRPC14  function RNA polymerase I(A) and III(C) 14 kDa subunit  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_component DNA-directed RNA polymerase III complex|GO:0005666|8682305|IDA  go_component DNA-directed RNA polymerase III complex|GO:0005666|8682305|ISS  go_process tRNA transcription|GO:0009304||TAS  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT); DNA binding / DNA-directed RNA polymerase/ protein dimerization  note RNA POLYMERASE 14 KDA SUBUNIT (ATRPC14); FUNCTIONS IN: DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding; INVOLVED IN: tRNA transcription; LOCATED IN: DNA-directed RNA polymerase III complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase Rpb11, 13-16 kDa subunit, conserved site (InterPro:IPR008193), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); BEST Arabidopsis thaliana protein match is: NRPB11; DNA binding / DNA-directed RNA polymerase (TAIR:AT3G52090.1); Has 572 Blast hits to 572 proteins in 159 species: Archae - 14; Bacteria - 0; Metazoa - 203; Fungi - 199; Plants - 63; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT2G29540.1p  transcript_id AT2G29540.1  protein_id AT2G29540.1p  transcript_id AT2G29540.1  
At2g29540	chr2:012642727	0.0	W/12642727-12642827,12643440-12643516,12643638-12643828	AT2G29540.2  CDS  gene_syn ATRPAC14, ATRPC14, F16P2.8, F16P2_8, RNA POLYMERASE 14 KDA SUBUNIT  gene ATRPC14  function RNA polymerase I(A) and III(C) 14 kDa subunit  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_component DNA-directed RNA polymerase III complex|GO:0005666|8682305|IDA  go_component DNA-directed RNA polymerase III complex|GO:0005666|8682305|ISS  go_process tRNA transcription|GO:0009304||TAS  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT); DNA binding / DNA-directed RNA polymerase/ protein dimerization  note RNA POLYMERASE 14 KDA SUBUNIT (ATRPC14); FUNCTIONS IN: DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding; INVOLVED IN: tRNA transcription; LOCATED IN: DNA-directed RNA polymerase III complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase Rpb11, 13-16 kDa subunit, conserved site (InterPro:IPR008193), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); BEST Arabidopsis thaliana protein match is: NRPB11; DNA binding / DNA-directed RNA polymerase (TAIR:AT3G52090.1); Has 572 Blast hits to 572 proteins in 159 species: Archae - 14; Bacteria - 0; Metazoa - 203; Fungi - 199; Plants - 63; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT2G29540.2p  transcript_id AT2G29540.2  protein_id AT2G29540.2p  transcript_id AT2G29540.2  
At2g29540	chr2:012643288	0.0	W/12643288-12643516,12643638-12643828	AT2G29540.3  CDS  gene_syn ATRPAC14, ATRPC14, F16P2.8, F16P2_8, RNA POLYMERASE 14 KDA SUBUNIT  gene ATRPC14  function RNA polymerase I(A) and III(C) 14 kDa subunit  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_component DNA-directed RNA polymerase III complex|GO:0005666|8682305|IDA  go_component DNA-directed RNA polymerase III complex|GO:0005666|8682305|ISS  go_process tRNA transcription|GO:0009304||TAS  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT); DNA binding / DNA-directed RNA polymerase/ protein dimerization  note RNA POLYMERASE 14 KDA SUBUNIT (ATRPC14); FUNCTIONS IN: DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding; INVOLVED IN: tRNA transcription; LOCATED IN: DNA-directed RNA polymerase III complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); Has 101 Blast hits to 101 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 52; Fungi - 4; Plants - 26; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT2G29540.3p  transcript_id AT2G29540.3  protein_id AT2G29540.3p  transcript_id AT2G29540.3  
At2g29550	chr2:012645539	0.0	C/12645539-12645932,12645084-12645353,12644258-12644943	AT2G29550.1  CDS  gene_syn F16P2.7, F16P2_7, TUB7  gene TUB7  function Encodes a beta-tubulin that is expressed in leaves, roots and flowers.  go_component cell wall|GO:0005618|16287169|IDA  go_component vacuole|GO:0005773|14760709|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component tubulin complex|GO:0045298|1498609|ISS  go_process microtubule-based process|GO:0007017|1498609|ISS  go_function structural constituent of cytoskeleton|GO:0005200|1498609|ISS  product TUB7; structural constituent of cytoskeleton  note TUB7; FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: response to cadmium ion, microtubule-based process, response to salt stress; LOCATED IN: tubulin complex, cell wall, plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase (InterPro:IPR003008), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: TUB3; GTP binding / GTPase/ structural molecule (TAIR:AT5G62700.1); Has 17194 Blast hits to 17140 proteins in 3647 species: Archae - 30; Bacteria - 33; Metazoa - 3621; Fungi - 9655; Plants - 1008; Viruses - 0; Other Eukaryotes - 2847 (source: NCBI BLink).  protein_id AT2G29550.1p  transcript_id AT2G29550.1  protein_id AT2G29550.1p  transcript_id AT2G29550.1  
At2g29560	chr2:012646635	0.0	W/12646635-12646739,12646826-12646980,12647066-12647240,12647323-12647394,12647476-12647592,12647715-12647795,12647896-12647972,12648094-12648197,12648423-12648521,12648622-12648707,12648877-12648963,12649070-12649267,12649623-12649694	AT2G29560.1  CDS  gene_syn F16P2.6, F16P2_6  go_component phosphopyruvate hydratase complex|GO:0000015||IEA  go_process glycolysis|GO:0006096||IEA  go_function phosphopyruvate hydratase activity|GO:0004634||IEA  go_function phosphopyruvate hydratase activity|GO:0004634||ISS  product enolase, putative  note enolase, putative; FUNCTIONS IN: phosphopyruvate hydratase activity; INVOLVED IN: glycolysis; LOCATED IN: phosphopyruvate hydratase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Enolase (InterPro:IPR000941); BEST Arabidopsis thaliana protein match is: LOS2; copper ion binding / phosphopyruvate hydratase (TAIR:AT2G36530.1); Has 9375 Blast hits to 9353 proteins in 2216 species: Archae - 179; Bacteria - 3114; Metazoa - 1311; Fungi - 220; Plants - 152; Viruses - 0; Other Eukaryotes - 4399 (source: NCBI BLink).  protein_id AT2G29560.1p  transcript_id AT2G29560.1  protein_id AT2G29560.1p  transcript_id AT2G29560.1  
At2g29570	chr2:012651280	0.0	C/12651280-12651598,12650639-12650791,12650458-12650555,12650139-12650363	AT2G29570.1  CDS  gene_syn A. THALIANA PROLIFERATING CELL NUCLEAR ANTIGEN 2, ATPCNA2, F16P2.5, F16P2_5, PCNA2, PROLIFERATING CELL NUCLEAR ANTIGEN 2  gene PCNA2  function Functionally interacts with POLH to repair DNA damaged by UVB damage.  go_component PCNA complex|GO:0043626||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA polymerase processivity factor activity|GO:0030337||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of DNA replication|GO:0006275||ISS  go_process error-prone postreplication DNA repair|GO:0042276|18494853|IDA  go_function DNA binding|GO:0003677||ISS  go_function DNA polymerase processivity factor activity|GO:0030337||ISS  product PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2); DNA binding / DNA polymerase processivity factor  note PROLIFERATING CELL NUCLEAR ANTIGEN 2 (PCNA2); FUNCTIONS IN: DNA binding, DNA polymerase processivity factor activity; INVOLVED IN: error-prone postreplication DNA repair, regulation of DNA replication; LOCATED IN: PCNA complex, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proliferating cell nuclear antigen, PCNA (InterPro:IPR000730); BEST Arabidopsis thaliana protein match is: PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN); DNA binding / DNA polymerase processivity factor/ protein binding (TAIR:AT1G07370.1); Has 1497 Blast hits to 1489 proteins in 340 species: Archae - 256; Bacteria - 0; Metazoa - 265; Fungi - 105; Plants - 119; Viruses - 68; Other Eukaryotes - 684 (source: NCBI BLink).  protein_id AT2G29570.1p  transcript_id AT2G29570.1  protein_id AT2G29570.1p  transcript_id AT2G29570.1  
At2g29580	chr2:012652011	0.0	W/12652011-12652115,12652511-12652780,12652901-12653124,12653306-12654158	AT2G29580.1  CDS  gene_syn F16P2.4, F16P2_4  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function RNA binding|GO:0003723||ISS  product zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein  note zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: F mature embryo stage, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT1G07360.1); Has 10655 Blast hits to 8392 proteins in 419 species: Archae - 8; Bacteria - 299; Metazoa - 5085; Fungi - 2309; Plants - 1897; Viruses - 119; Other Eukaryotes - 938 (source: NCBI BLink).  protein_id AT2G29580.1p  transcript_id AT2G29580.1  protein_id AT2G29580.1p  transcript_id AT2G29580.1  
At2g29590	chr2:012655241	0.0	C/12655241-12655432,12654848-12654988,12654602-12654745	AT2G29590.1  CDS  gene_syn F16P2.3, F16P2_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function acyl-CoA thioesterase activity|GO:0016291||ISS  go_function hydrolase activity, acting on ester bonds|GO:0016788||ISS  product thioesterase family protein  note thioesterase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioesterase superfamily (InterPro:IPR006683); BEST Arabidopsis thaliana protein match is: thioesterase family protein (TAIR:AT1G04290.1); Has 196 Blast hits to 196 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 70; Fungi - 12; Plants - 110; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G29590.1p  transcript_id AT2G29590.1  protein_id AT2G29590.1p  transcript_id AT2G29590.1  
At2g29600	chr2:012655661	0.0	W/12655661-12656908	AT2G29600.1  CDS  gene_syn F16P2.2, F16P2_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, flower, carpel, seed; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT2G29800.1); Has 3369 Blast hits to 2731 proteins in 196 species: Archae - 10; Bacteria - 148; Metazoa - 2359; Fungi - 10; Plants - 615; Viruses - 126; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT2G29600.1p  transcript_id AT2G29600.1  protein_id AT2G29600.1p  transcript_id AT2G29600.1  
At2g29605	chr2:012660016	0.0	C/12660016-12660087,12659794-12659899,12659556-12659711,12659387-12659455,12659038-12659103,12658864-12658935,12658695-12658766,12658527-12658601,12657909-12658426	AT2G29605.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G45800.1); Has 1173 Blast hits to 561 proteins in 74 species: Archae - 0; Bacteria - 32; Metazoa - 301; Fungi - 48; Plants - 114; Viruses - 0; Other Eukaryotes - 678 (source: NCBI BLink).  protein_id AT2G29605.1p  transcript_id AT2G29605.1  protein_id AT2G29605.1p  transcript_id AT2G29605.1  
At2g29610	chr2:012661312	0.0	W/12661312-12662417	AT2G29610.1  pseudogenic_transcript  pseudo  gene_syn T27A16.2  function pseudogene of the F-box protein family, contains Pfam profile PF00646: F-box domain  
At2g29620	chr2:012664651	0.0	C/12664651-12665803,12663955-12664562,12663543-12663872,12663409-12663450,12663200-12663310	AT2G29620.1  CDS  gene_syn T27A16.28, T27A16_28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07330.1); Has 728 Blast hits to 600 proteins in 123 species: Archae - 0; Bacteria - 42; Metazoa - 253; Fungi - 47; Plants - 58; Viruses - 6; Other Eukaryotes - 322 (source: NCBI BLink).  protein_id AT2G29620.1p  transcript_id AT2G29620.1  protein_id AT2G29620.1p  transcript_id AT2G29620.1  
At2g29628	chr2:012666832	0.0	C/12666832-12666957	AT2G29628.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G29628.1p  transcript_id AT2G29628.1  protein_id AT2G29628.1p  transcript_id AT2G29628.1  
At2g29630	chr2:012667395	0.0	W/12667395-12667693,12667772-12667899,12667981-12668807,12668889-12669569	AT2G29630.1  CDS  gene_syn T27A16.27, T27A16_27, THIC, ThiaminC  gene THIC  function Encodes a protein involved in thiamin biosynthesis. The protein is an iron-sulfur cluster protein predicted to catalyze the conversion of 5-aminoimidazole ribonucleotide (AIR) to hydroxymethylpyrimidine (HMP) or hydroxymethylpyrimidine phosphate (HMP-P). A severe reduction of THIC levels in plants decreases vitamin B1 (thiamin diphosphate (TPP)) levels and also leads to changes in the levels of numerous other metabolites since so many primary metabolic enzymes require a TPP co-factor. thiC mutants are chlorotic and arrest in their development at the cotyledon stage. A N-terminal targeting sequence directs the THIC protein to the chloroplast stroma. A conserved TPP-binding site is located in the 3  UTR of the At2g29630.2 gene model, and is predicted to function as a riboswitch. The riboswitch controls the formation of transcripts with alternative 3  UTR lengths, which affect mRNA accumulation and protein production. THIC transcripts are observed in seedlings 5 or more days after germination, and light promotes the expression of this gene.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast|GO:0009507|18332905|IDA  go_component plastid|GO:0009536|18332905|IDA  go_component chloroplast stroma|GO:0009570|18048325|IDA  go_process thiamin biosynthetic process|GO:0009228|18048325|IMP  go_process thiamin biosynthetic process|GO:0009228||ISS  go_process response to vitamin B1|GO:0010266|17993623|IEP  go_function catalytic activity|GO:0003824||ISS  go_function iron-sulfur cluster binding|GO:0051536|18048325|IDA  go_function ADP-ribose pyrophosphohydrolase activity|GO:0080041|18332905|IGI  product THIC (ThiaminC); ADP-ribose pyrophosphohydrolase/ catalytic/ iron-sulfur cluster binding  note ThiaminC (THIC); FUNCTIONS IN: iron-sulfur cluster binding, ADP-ribose pyrophosphohydrolase activity, catalytic activity; INVOLVED IN: response to vitamin B1, thiamin biosynthetic process; LOCATED IN: chloroplast, chloroplast stroma, plastid; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiamine biosynthesis protein ThiC (InterPro:IPR002817); Has 2813 Blast hits to 2810 proteins in 994 species: Archae - 158; Bacteria - 1977; Metazoa - 2; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 643 (source: NCBI BLink).  protein_id AT2G29630.1p  transcript_id AT2G29630.1  protein_id AT2G29630.1p  transcript_id AT2G29630.1  
At2g29630	chr2:012667395	0.0	W/12667395-12667693,12667772-12667899,12667981-12668807,12668889-12669569	AT2G29630.2  CDS  gene_syn T27A16.27, T27A16_27, THIC, ThiaminC  gene THIC  function Encodes a protein involved in thiamin biosynthesis. The protein is an iron-sulfur cluster protein predicted to catalyze the conversion of 5-aminoimidazole ribonucleotide (AIR) to hydroxymethylpyrimidine (HMP) or hydroxymethylpyrimidine phosphate (HMP-P). A severe reduction of THIC levels in plants decreases vitamin B1 (thiamin diphosphate (TPP)) levels and also leads to changes in the levels of numerous other metabolites since so many primary metabolic enzymes require a TPP co-factor. thiC mutants are chlorotic and arrest in their development at the cotyledon stage. A N-terminal targeting sequence directs the THIC protein to the chloroplast stroma. A conserved TPP-binding site is located in the 3  UTR of the At2g29630.2 gene model, and is predicted to function as a riboswitch. The riboswitch controls the formation of transcripts with alternative 3  UTR lengths, which affect mRNA accumulation and protein production. THIC transcripts are observed in seedlings 5 or more days after germination, and light promotes the expression of this gene.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|18332905|IDA  go_component plastid|GO:0009536|18332905|IDA  go_component chloroplast stroma|GO:0009570|18048325|IDA  go_process thiamin biosynthetic process|GO:0009228|18048325|IMP  go_process thiamin biosynthetic process|GO:0009228||ISS  go_process response to vitamin B1|GO:0010266|17993623|IEP  go_function catalytic activity|GO:0003824||ISS  go_function iron-sulfur cluster binding|GO:0051536|18048325|IDA  go_function ADP-ribose pyrophosphohydrolase activity|GO:0080041|18332905|IGI  product THIC (ThiaminC); ADP-ribose pyrophosphohydrolase/ catalytic/ iron-sulfur cluster binding  note ThiaminC (THIC); FUNCTIONS IN: iron-sulfur cluster binding, ADP-ribose pyrophosphohydrolase activity, catalytic activity; INVOLVED IN: response to vitamin B1, thiamin biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast, plastid; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiamine biosynthesis protein ThiC (InterPro:IPR002817); Has 2813 Blast hits to 2810 proteins in 994 species: Archae - 158; Bacteria - 1977; Metazoa - 2; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 643 (source: NCBI BLink).  protein_id AT2G29630.2p  transcript_id AT2G29630.2  protein_id AT2G29630.2p  transcript_id AT2G29630.2  
At2g29640	chr2:012671206	0.0	W/12671206-12671289,12671380-12671803,12672076-12672221,12672326-12672362,12672909-12673300	AT2G29640.1  CDS  gene_syn JOSEPHIN-LIKE PROTEIN, JOSL, T27A16.26, T27A16_26  gene JOSL  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product JOSL (JOSEPHIN-LIKE PROTEIN)  note JOSEPHIN-LIKE PROTEIN (JOSL); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Machado-Joseph disease protein MJD (InterPro:IPR006155); BEST Arabidopsis thaliana protein match is: josephin protein-related (TAIR:AT1G07300.1); Has 321 Blast hits to 321 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 238; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT2G29640.1p  transcript_id AT2G29640.1  protein_id AT2G29640.1p  transcript_id AT2G29640.1  
At2g29650	chr2:012675644	0.0	C/12675644-12676003,12675461-12675568,12675173-12675328,12674868-12675083,12674570-12674779,12674346-12674483,12674081-12674248,12673907-12673991,12673685-12673782	AT2G29650.1  CDS  gene_syn ANTR1, PHT4;1, T27A16.25, T27A16_25, anion transporter 1  gene PHT4;1  function Encodes an inorganic phosphate transporter (PHT4;1) that is localized to the thylakoid membrane.  go_component thylakoid|GO:0009579|18353780|IDA  go_component membrane|GO:0016020||ISS  go_process response to nematode|GO:0009624|16478044|IEP  go_function inorganic phosphate transmembrane transporter activity|GO:0005315|18086223|IDA  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function organic anion transmembrane transporter activity|GO:0008514||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  go_function inorganic diphosphate transmembrane transporter activity|GO:0030504|18353780|IGI  product PHT4;1; carbohydrate transmembrane transporter/ inorganic diphosphate transmembrane transporter/ inorganic phosphate transmembrane transporter/ organic anion transmembrane transporter/ sugar:hydrogen symporter  note PHT4;1; FUNCTIONS IN: organic anion transmembrane transporter activity, inorganic diphosphate transmembrane transporter activity, carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, inorganic phosphate transmembrane transporter activity; INVOLVED IN: response to nematode; LOCATED IN: thylakoid, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ANTR2; inorganic phosphate transmembrane transporter/ organic anion transmembrane transporter (TAIR:AT4G00370.1); Has 21583 Blast hits to 21500 proteins in 1365 species: Archae - 276; Bacteria - 16199; Metazoa - 2239; Fungi - 770; Plants - 214; Viruses - 0; Other Eukaryotes - 1885 (source: NCBI BLink).  protein_id AT2G29650.1p  transcript_id AT2G29650.1  protein_id AT2G29650.1p  transcript_id AT2G29650.1  
At2g29650	chr2:012675644	0.0	C/12675644-12676003,12675461-12675568,12675173-12675328,12674868-12675083,12674570-12674779,12674346-12674483,12674259-12674267	AT2G29650.2  CDS  gene_syn ANTR1, PHT4;1, T27A16.25, T27A16_25, anion transporter 1  gene PHT4;1  function Encodes an inorganic phosphate transporter (PHT4;1) that is localized to the thylakoid membrane.  go_component thylakoid|GO:0009579|18353780|IDA  go_component membrane|GO:0016020||ISS  go_process response to nematode|GO:0009624|16478044|IEP  go_function inorganic phosphate transmembrane transporter activity|GO:0005315|18086223|IDA  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function organic anion transmembrane transporter activity|GO:0008514||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  go_function inorganic diphosphate transmembrane transporter activity|GO:0030504|18353780|IGI  product PHT4;1; carbohydrate transmembrane transporter/ inorganic diphosphate transmembrane transporter/ inorganic phosphate transmembrane transporter/ organic anion transmembrane transporter/ sugar:hydrogen symporter  note anion transporter 1 (ANTR1); FUNCTIONS IN: organic anion transmembrane transporter activity, inorganic diphosphate transmembrane transporter activity, carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, inorganic phosphate transmembrane transporter activity; INVOLVED IN: response to nematode; LOCATED IN: thylakoid, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox protein, antennapedia type, conserved site (InterPro:IPR001827), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ANTR2; inorganic phosphate transmembrane transporter/ organic anion transmembrane transporter (TAIR:AT4G00370.1); Has 20610 Blast hits to 20546 proteins in 1346 species: Archae - 248; Bacteria - 15468; Metazoa - 2187; Fungi - 731; Plants - 192; Viruses - 0; Other Eukaryotes - 1784 (source: NCBI BLink).  protein_id AT2G29650.2p  transcript_id AT2G29650.2  protein_id AT2G29650.2p  transcript_id AT2G29650.2  
At2g29650	chr2:012675699	0.0	C/12675699-12675722,12675461-12675568,12675173-12675328,12674868-12675083,12674570-12674779,12674346-12674483,12674081-12674248,12673907-12673991,12673685-12673782	AT2G29650.3  CDS  gene_syn ANTR1, PHT4;1, T27A16.25, T27A16_25, anion transporter 1  gene PHT4;1  function Encodes an inorganic phosphate transporter (PHT4;1) that is localized to the thylakoid membrane.  go_component thylakoid|GO:0009579|18353780|IDA  go_component membrane|GO:0016020||ISS  go_process response to nematode|GO:0009624|16478044|IEP  go_function inorganic phosphate transmembrane transporter activity|GO:0005315|18086223|IDA  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function organic anion transmembrane transporter activity|GO:0008514||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  go_function inorganic diphosphate transmembrane transporter activity|GO:0030504|18353780|IGI  product PHT4;1; carbohydrate transmembrane transporter/ inorganic diphosphate transmembrane transporter/ inorganic phosphate transmembrane transporter/ organic anion transmembrane transporter/ sugar:hydrogen symporter  note anion transporter 1 (ANTR1); FUNCTIONS IN: organic anion transmembrane transporter activity, inorganic diphosphate transmembrane transporter activity, carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, inorganic phosphate transmembrane transporter activity; INVOLVED IN: response to nematode; LOCATED IN: thylakoid, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox protein, antennapedia type, conserved site (InterPro:IPR001827), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ANTR2; inorganic phosphate transmembrane transporter/ organic anion transmembrane transporter (TAIR:AT4G00370.1); Has 18589 Blast hits to 18510 proteins in 1289 species: Archae - 234; Bacteria - 13880; Metazoa - 2180; Fungi - 470; Plants - 208; Viruses - 0; Other Eukaryotes - 1617 (source: NCBI BLink).  protein_id AT2G29650.3p  transcript_id AT2G29650.3  protein_id AT2G29650.3p  transcript_id AT2G29650.3  
At2g29654	chr2:012677279	0.0	C/12677279-12677461	AT2G29654.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G29654.1p  transcript_id AT2G29654.1  protein_id AT2G29654.1p  transcript_id AT2G29654.1  
At2g29660	chr2:012679346	0.0	W/12679346-12680467	AT2G29660.1  CDS  gene_syn T27A16.24, T27A16_24  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: anchored to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT1G75710.1); Has 116 Blast hits to 116 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 12; Plants - 103; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G29660.1p  transcript_id AT2G29660.1  protein_id AT2G29660.1p  transcript_id AT2G29660.1  
At2g29670	chr2:012683385	0.0	C/12683385-12684745,12682309-12682558	AT2G29670.1  CDS  gene_syn T27A16.23, T27A16_23  go_component chloroplast|GO:0009507||IEA  go_function binding|GO:0005488||IEA  product binding  note binding; FUNCTIONS IN: binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT1G07280.3); Has 351 Blast hits to 210 proteins in 32 species: Archae - 10; Bacteria - 88; Metazoa - 2; Fungi - 0; Plants - 203; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT2G29670.1p  transcript_id AT2G29670.1  protein_id AT2G29670.1p  transcript_id AT2G29670.1  
At2g29679	chr2:012689276	0.0	C/12689276-12689398	AT2G29679.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G29679.1p  transcript_id AT2G29679.1  protein_id AT2G29679.1p  transcript_id AT2G29679.1  
At2g29680	chr2:012689586	0.0	W/12689586-12689825,12689908-12689992,12690075-12690295,12690381-12690455,12690542-12690651,12690750-12690856,12690950-12691009,12691137-12691210,12691420-12691470,12691564-12691613,12691770-12691851,12691954-12692043,12692296-12692358,12692454-12692549,12692651-12692740,12692822-12692854	AT2G29680.2  CDS  gene_syn CDC6, CELL DIVISION CONTROL 6, T27A16.22, T27A16_22  gene CDC6  function Encodes cell division control protein 6 (CDC6).  go_component chloroplast|GO:0009507||IEA  go_process DNA replication|GO:0006260||ISS  go_process regulation of cell cycle|GO:0051726||ISS  product CDC6 (CELL DIVISION CONTROL 6)  note CELL DIVISION CONTROL 6 (CDC6); INVOLVED IN: regulation of cell cycle, DNA replication; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CDC6, C-terminal (InterPro:IPR015163), Cell division control, Cdc6 (InterPro:IPR016314); BEST Arabidopsis thaliana protein match is: cell division control protein CDC6b, putative (CDC6b) (TAIR:AT1G07270.1); Has 972 Blast hits to 969 proteins in 245 species: Archae - 211; Bacteria - 0; Metazoa - 308; Fungi - 191; Plants - 64; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink).  protein_id AT2G29680.2p  transcript_id AT2G29680.2  protein_id AT2G29680.2p  transcript_id AT2G29680.2  
At2g29680	chr2:012689586	0.0	W/12689586-12689825,12689908-12689992,12690075-12690295,12690381-12690455,12690542-12690651,12690750-12691009,12691137-12691210,12691420-12691470,12691564-12691613,12691770-12691851,12691954-12692043,12692296-12692358,12692454-12692549,12692651-12692740,12692822-12692854	AT2G29680.1  CDS  gene_syn CDC6, CELL DIVISION CONTROL 6, T27A16.22, T27A16_22  gene CDC6  function Encodes cell division control protein 6 (CDC6).  go_component chloroplast|GO:0009507||IEA  go_process DNA replication|GO:0006260||ISS  go_process regulation of cell cycle|GO:0051726||ISS  product CDC6 (CELL DIVISION CONTROL 6)  note CELL DIVISION CONTROL 6 (CDC6); INVOLVED IN: regulation of cell cycle, DNA replication; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CDC6, C-terminal (InterPro:IPR015163), Cell division control, Cdc6 (InterPro:IPR016314); BEST Arabidopsis thaliana protein match is: cell division control protein CDC6b, putative (CDC6b) (TAIR:AT1G07270.1); Has 877 Blast hits to 873 proteins in 240 species: Archae - 162; Bacteria - 0; Metazoa - 307; Fungi - 189; Plants - 54; Viruses - 0; Other Eukaryotes - 165 (source: NCBI BLink).  protein_id AT2G29680.1p  transcript_id AT2G29680.1  protein_id AT2G29680.1p  transcript_id AT2G29680.1  
At2g29690	chr2:012693899	0.0	W/12693899-12694124,12694199-12694392,12694480-12694669,12694757-12694908,12694987-12695102,12695196-12695442,12695544-12695600,12695697-12695849,12695962-12696042,12696279-12696365,12696429-12696791	AT2G29690.1  CDS  gene_syn ANTHRANILATE SYNTHASE 2, ASA2, ATHANSYNAB, T27A16.21, T27A16_21  gene ASA2  function Encode a functional anthranilate synthase protein. Expressed at a constitutive basal level. Expression was not induced by wounding nor bacterial pathogen infiltration. Involved in aromatic amino acid biosynthesis.  go_component chloroplast|GO:0009507|18431481|IDA  go_component anthranilate synthase complex|GO:0005950|1392592|NAS  go_component chloroplast|GO:0009507|1392592|TAS  go_process tryptophan biosynthetic process|GO:0000162|1392592|TAS  go_process aromatic amino acid family biosynthetic process|GO:0009073|1392592|IGI  go_function anthranilate synthase activity|GO:0004049|1392592|IGI  product ASA2 (ANTHRANILATE SYNTHASE 2); anthranilate synthase  note ANTHRANILATE SYNTHASE 2 (ASA2); FUNCTIONS IN: anthranilate synthase activity; INVOLVED IN: tryptophan biosynthetic process, aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast, anthranilate synthase complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Anthranilate synthase component I, N-terminal (InterPro:IPR006805), Chorismate binding, C-terminal (InterPro:IPR015890), Anthranilate synthase component I and chorismate binding protein (InterPro:IPR005801), Anthranilate synthase component I (InterPro:IPR005256); BEST Arabidopsis thaliana protein match is: ASA1 (ANTHRANILATE SYNTHASE ALPHA SUBUNIT 1); anthranilate synthase (TAIR:AT5G05730.1); Has 11020 Blast hits to 11017 proteins in 1405 species: Archae - 159; Bacteria - 5893; Metazoa - 4; Fungi - 208; Plants - 114; Viruses - 0; Other Eukaryotes - 4642 (source: NCBI BLink).  protein_id AT2G29690.1p  transcript_id AT2G29690.1  protein_id AT2G29690.1p  transcript_id AT2G29690.1  
At2g29700	chr2:012697571	0.0	W/12697571-12698008	AT2G29700.1  CDS  gene_syn ARABIDOPSIS THALIANA PLECKSTRIN HOMOLOGUE 1, ATPH1, T27A16.20, T27A16_20  gene ATPH1  function Encodes a protein containing one PH (pleckstrin homology) domain with a short N-terminal extension  go_component cellular_component|GO:0005575||ND  go_process signal transduction|GO:0007165|15358268|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product ATPH1 (ARABIDOPSIS THALIANA PLECKSTRIN HOMOLOGUE 1); phosphoinositide binding  note ARABIDOPSIS THALIANA PLECKSTRIN HOMOLOGUE 1 (ATPH1); FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: pleckstrin homology (PH) domain-containing protein (TAIR:AT5G05710.1); Has 1904 Blast hits to 1904 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 1554; Fungi - 24; Plants - 53; Viruses - 3; Other Eukaryotes - 270 (source: NCBI BLink).  protein_id AT2G29700.1p  transcript_id AT2G29700.1  protein_id AT2G29700.1p  transcript_id AT2G29700.1  
At2g29710	chr2:012698717	0.0	W/12698717-12700120	AT2G29710.1  CDS  gene_syn T27A16.19, T27A16_19  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT71D1 (UDP-GLUCOSYL TRANSFERASE 71D1); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT2G29730.1); Has 4756 Blast hits to 4733 proteins in 255 species: Archae - 0; Bacteria - 72; Metazoa - 2016; Fungi - 9; Plants - 2602; Viruses - 30; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT2G29710.1p  transcript_id AT2G29710.1  protein_id AT2G29710.1p  transcript_id AT2G29710.1  
At2g29720	chr2:012702102	0.0	C/12702102-12702289,12701866-12702012,12701722-12701787,12701480-12701642,12701165-12701393,12700592-12701082	AT2G29720.1  CDS  gene_syn CTF2B, T27A16.18, T27A16_18  gene CTF2B  function Encodes CTF2B.  go_component mitochondrion|GO:0005739||IEA  go_process metabolic process|GO:0008152||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function monooxygenase activity|GO:0004497||ISS  product CTF2B; monooxygenase/ oxidoreductase  note CTF2B; FUNCTIONS IN: oxidoreductase activity, monooxygenase activity; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Aromatic-ring hydroxylase-like (InterPro:IPR003042), Monooxygenase, FAD-binding (InterPro:IPR002938); BEST Arabidopsis thaliana protein match is: CTF2A; monooxygenase/ oxidoreductase (TAIR:AT2G35660.1); Has 6500 Blast hits to 6476 proteins in 920 species: Archae - 11; Bacteria - 3625; Metazoa - 101; Fungi - 1159; Plants - 305; Viruses - 0; Other Eukaryotes - 1299 (source: NCBI BLink).  protein_id AT2G29720.1p  transcript_id AT2G29720.1  protein_id AT2G29720.1p  transcript_id AT2G29720.1  
At2g29730	chr2:012703652	0.0	W/12703652-12705055	AT2G29730.1  CDS  gene_syn T27A16.17, T27A16_17, UDP-GLUCOSYL TRANSFERASE 71D1, UGT71D1  gene UGT71D1  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function quercetin 3-O-glucosyltransferase activity|GO:0080043|15352060|IDA  product UGT71D1 (UDP-GLUCOSYL TRANSFERASE 71D1); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring glycosyl groups  note UDP-GLUCOSYL TRANSFERASE 71D1 (UGT71D1); FUNCTIONS IN: quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT2G29710.1); Has 4873 Blast hits to 4848 proteins in 284 species: Archae - 0; Bacteria - 111; Metazoa - 2051; Fungi - 11; Plants - 2603; Viruses - 66; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT2G29730.1p  transcript_id AT2G29730.1  protein_id AT2G29730.1p  transcript_id AT2G29730.1  
At2g29740	chr2:012706747	0.0	W/12706747-12708171	AT2G29740.1  CDS  gene_syn T27A16.16, T27A16_16, UDP-GLUCOSYL TRANSFERASE 71C2, UGT71C2  gene UGT71C2  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function quercetin 3-O-glucosyltransferase activity|GO:0080043|15352060|IDA  go_function quercetin 7-O-glucosyltransferase activity|GO:0080044|15352060|IDA  go_function quercetin 3 -O-glucosyltransferase activity|GO:0080045|15352060|IDA  product UGT71C2 (UDP-GLUCOSYL TRANSFERASE 71C2); UDP-glycosyltransferase/ quercetin 3 -O-glucosyltransferase/ quercetin 3-O-glucosyltransferase/ quercetin 7-O-glucosyltransferase/ transferase, transferring glycosyl groups  note UDP-GLUCOSYL TRANSFERASE 71C2 (UGT71C2); FUNCTIONS IN: quercetin 3 -O-glucosyltransferase activity, quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT71C1 (UDP-GLUCOSYL TRANSFERASE 71C1); UDP-glycosyltransferase/ quercetin 3 -O-glucosyltransferase/ quercetin 7-O-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT2G29750.1); Has 4656 Blast hits to 4636 proteins in 273 species: Archae - 0; Bacteria - 71; Metazoa - 1859; Fungi - 11; Plants - 2659; Viruses - 28; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT2G29740.1p  transcript_id AT2G29740.1  protein_id AT2G29740.1p  transcript_id AT2G29740.1  
At2g29750	chr2:012709902	0.0	W/12709902-12711347	AT2G29750.1  CDS  gene_syn T27A16.15, T27A16_15, UDP-GLUCOSYL TRANSFERASE 71C1, UGT71C1  gene UGT71C1  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function quercetin 7-O-glucosyltransferase activity|GO:0080044|15352060|IDA  go_function quercetin 3 -O-glucosyltransferase activity|GO:0080045|15352060|IDA  product UGT71C1 (UDP-GLUCOSYL TRANSFERASE 71C1); UDP-glycosyltransferase/ quercetin 3 -O-glucosyltransferase/ quercetin 7-O-glucosyltransferase/ transferase, transferring glycosyl groups  note UDP-GLUCOSYL TRANSFERASE 71C1 (UGT71C1); FUNCTIONS IN: quercetin 3 -O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT71C2 (UDP-GLUCOSYL TRANSFERASE 71C2); UDP-glycosyltransferase/ quercetin 3 -O-glucosyltransferase/ quercetin 3-O-glucosyltransferase/ quercetin 7-O-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT2G29740.1); Has 4670 Blast hits to 4652 proteins in 274 species: Archae - 0; Bacteria - 118; Metazoa - 1884; Fungi - 11; Plants - 2611; Viruses - 17; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT2G29750.1p  transcript_id AT2G29750.1  protein_id AT2G29750.1p  transcript_id AT2G29750.1  
At2g29760	chr2:012712884	0.0	W/12712884-12715100	AT2G29760.1  CDS  gene_syn T27A16.14, T27A16_14  go_component chloroplast|GO:0009507||IEA  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G08070.1); Has 13791 Blast hits to 5367 proteins in 185 species: Archae - 1; Bacteria - 2; Metazoa - 154; Fungi - 101; Plants - 13117; Viruses - 2; Other Eukaryotes - 414 (source: NCBI BLink).  protein_id AT2G29760.1p  transcript_id AT2G29760.1  protein_id AT2G29760.1p  transcript_id AT2G29760.1  
At2g29770	chr2:012715710	0.0	C/12715710-12716873	AT2G29770.1  CDS  gene_syn T27A16.13, T27A16_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT2G29780.1); Has 656 Blast hits to 640 proteins in 56 species: Archae - 2; Bacteria - 11; Metazoa - 131; Fungi - 0; Plants - 494; Viruses - 10; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT2G29770.1p  transcript_id AT2G29770.1  protein_id AT2G29770.1p  transcript_id AT2G29770.1  
At2g29780	chr2:012718132	0.0	C/12718132-12719328	AT2G29780.1  CDS  gene_syn T27A16.12, T27A16_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT2G29770.1); Has 931 Blast hits to 884 proteins in 94 species: Archae - 6; Bacteria - 69; Metazoa - 308; Fungi - 2; Plants - 502; Viruses - 18; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT2G29780.1p  transcript_id AT2G29780.1  protein_id AT2G29780.1p  transcript_id AT2G29780.1  
At2g29780	chr2:012718374	0.0	C/12718374-12719328,12718132-12718265	AT2G29780.2  CDS  gene_syn T27A16.12, T27A16_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT2G29770.1); Has 944 Blast hits to 886 proteins in 95 species: Archae - 6; Bacteria - 73; Metazoa - 312; Fungi - 3; Plants - 506; Viruses - 18; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT2G29780.2p  transcript_id AT2G29780.2  protein_id AT2G29780.2p  transcript_id AT2G29780.2  
At2g29790	chr2:012722369	0.0	C/12722369-12722432,12722208-12722243,12721923-12721958,12721628-12721662,12721332-12721367,12720985-12721020	AT2G29790.1  CDS  gene_syn T27A16.11, T27A16_11  function Encodes a Maternally expressed gene (MEG) family protein [pseudogene]  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G29790.1p  transcript_id AT2G29790.1  protein_id AT2G29790.1p  transcript_id AT2G29790.1  
At2g29800	chr2:012723358	0.0	C/12723358-12724602	AT2G29800.1  CDS  gene_syn T27A16.10, T27A16_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT2G29600.1); Has 1707 Blast hits to 1523 proteins in 104 species: Archae - 6; Bacteria - 47; Metazoa - 1097; Fungi - 0; Plants - 439; Viruses - 66; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT2G29800.1p  transcript_id AT2G29800.1  protein_id AT2G29800.1p  transcript_id AT2G29800.1  
At2g29810	chr2:012726102	0.0	C/12726102-12727253	AT2G29810.1  CDS  gene_syn T27A16.9, T27A16_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT2G29800.1); Has 1547 Blast hits to 1377 proteins in 122 species: Archae - 8; Bacteria - 66; Metazoa - 835; Fungi - 5; Plants - 549; Viruses - 30; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT2G29810.1p  transcript_id AT2G29810.1  protein_id AT2G29810.1p  transcript_id AT2G29810.1  
At2g29820	chr2:012728362	0.0	C/12728362-12729528	AT2G29820.1  CDS  gene_syn T27A16.8, T27A16_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT2G29830.1); Has 2154 Blast hits to 1796 proteins in 100 species: Archae - 8; Bacteria - 72; Metazoa - 1390; Fungi - 9; Plants - 590; Viruses - 18; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT2G29820.1p  transcript_id AT2G29820.1  protein_id AT2G29820.1p  transcript_id AT2G29820.1  
At2g29830	chr2:012730411	0.0	C/12730411-12731562	AT2G29830.1  CDS  gene_syn T27A16.1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT2G29820.1); Has 2055 Blast hits to 1747 proteins in 126 species: Archae - 14; Bacteria - 78; Metazoa - 1277; Fungi - 15; Plants - 588; Viruses - 21; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT2G29830.1p  transcript_id AT2G29830.1  protein_id AT2G29830.1p  transcript_id AT2G29830.1  
At2g29840	chr2:012733827	0.0	C/12733827-12733983,12732387-12733111	AT2G29840.1  CDS  gene_syn T27A16.6, T27A16_6  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G18780.1); Has 5603 Blast hits to 5596 proteins in 200 species: Archae - 0; Bacteria - 0; Metazoa - 2092; Fungi - 387; Plants - 2136; Viruses - 32; Other Eukaryotes - 956 (source: NCBI BLink).  protein_id AT2G29840.1p  transcript_id AT2G29840.1  protein_id AT2G29840.1p  transcript_id AT2G29840.1  
At2g29850	chr2:012734725	0.0	W/12734725-12734754,12734874-12734922,12734993-12735073,12735206-12735271,12735374-12735445,12735543-12735614,12735708-12735782,12735985-12736394	AT2G29850.1  CDS  gene_syn T27A16.5, T27A16_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29605.1); Has 1004 Blast hits to 440 proteins in 63 species: Archae - 0; Bacteria - 14; Metazoa - 266; Fungi - 46; Plants - 40; Viruses - 0; Other Eukaryotes - 638 (source: NCBI BLink).  protein_id AT2G29850.1p  transcript_id AT2G29850.1  protein_id AT2G29850.1p  transcript_id AT2G29850.1  
At2g29860	chr2:012737666	0.0	C/12737666-12738388	AT2G29860.1  CDS  gene_syn T27A16.4, T27A16_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT2G29830.1); Has 1337 Blast hits to 1220 proteins in 97 species: Archae - 12; Bacteria - 48; Metazoa - 740; Fungi - 2; Plants - 482; Viruses - 6; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT2G29860.1p  transcript_id AT2G29860.1  protein_id AT2G29860.1p  transcript_id AT2G29860.1  
At2g29870	chr2:012741192	0.0	W/12741192-12741332,12741411-12741472,12741575-12741791	AT2G29870.1  CDS  gene_syn T27A16.3, T27A16_3  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_function water channel activity|GO:0015250||ISS  product major intrinsic family protein / MIP family protein  note major intrinsic family protein / MIP family protein; FUNCTIONS IN: water channel activity; INVOLVED IN: transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: NIP2;1 (NOD26-LIKE INTRINSIC PROTEIN 2;1); lactate transmembrane transporter/ water channel (TAIR:AT2G34390.1); Has 3494 Blast hits to 3485 proteins in 816 species: Archae - 51; Bacteria - 1205; Metazoa - 806; Fungi - 100; Plants - 1074; Viruses - 0; Other Eukaryotes - 258 (source: NCBI BLink).  protein_id AT2G29870.1p  transcript_id AT2G29870.1  protein_id AT2G29870.1p  transcript_id AT2G29870.1  
At2g29880	chr2:012742536	0.0	W/12742536-12742895,12742979-12743545	AT2G29880.1  CDS  gene_syn T27A16.36  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, pollen tube; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 138 Blast hits to 119 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 8; Plants - 124; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT2G29880.1p  transcript_id AT2G29880.1  protein_id AT2G29880.1p  transcript_id AT2G29880.1  
At2g29890	chr2:012744597	0.0	W/12744597-12744652,12744736-12744835,12744918-12744986,12745071-12745304,12745403-12745580,12745667-12745799,12745931-12746096,12746236-12746386,12746484-12746572,12746642-12746797,12746891-12746959,12747070-12747276,12747354-12747482,12747606-12747753,12747870-12747880,12747981-12748121,12748305-12748430,12748570-12748632,12748699-12748921,12749112-12749278,12749361-12749474	AT2G29890.1  CDS  gene_syn ATVLN1, F6K5.2, F6K5_2, VILLIN-LIKE 1, VLN1  gene VLN1  function Encodes a ubiquitously expressed villin-like protein, whose mRNA may be alternatively processed. Villin belongs to a superfamily of actin binding proteins called the villin/gelsolin family. Animal villins are involved in actin binding. VLN1 protein co-localizes with actin filaments in several assays. VLN1 binds and bundles F-actin in a calcium-independent manner. It does not nucleate, cap or sever actin filaments and it stabilizes actin filaments, protecting them from ADF-mediated depolymerization.  go_component actin cytoskeleton|GO:0015629|10631247|IDA  go_process cytoskeleton organization|GO:0007010||ISS  go_process actin filament organization|GO:0007015|15659626|IPI  go_process actin filament depolymerization|GO:0030042|15659626|IDA  go_process negative regulation of actin filament depolymerization|GO:0030835|15659626|IDA  go_process actin nucleation|GO:0045010|15659626|IDA  go_process actin filament severing|GO:0051014|15659626|IDA  go_process barbed-end actin filament capping|GO:0051016|15659626|IDA  go_function actin binding|GO:0003779|10631247|IDA  go_function actin binding|GO:0003779||ISS  go_function actin filament binding|GO:0051015|15659626|IPI  product VLN1 (VILLIN-LIKE 1); actin binding / actin filament binding  note VILLIN-LIKE 1 (VLN1); FUNCTIONS IN: actin binding, actin filament binding; INVOLVED IN: in 7 processes; LOCATED IN: actin cytoskeleton; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Gelsolin (InterPro:IPR007122), Villin headpiece (InterPro:IPR003128), Gelsolin region (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: villin, putative (TAIR:AT5G57320.1); Has 2608 Blast hits to 1425 proteins in 128 species: Archae - 0; Bacteria - 0; Metazoa - 2143; Fungi - 74; Plants - 124; Viruses - 0; Other Eukaryotes - 267 (source: NCBI BLink).  protein_id AT2G29890.1p  transcript_id AT2G29890.1  protein_id AT2G29890.1p  transcript_id AT2G29890.1  
At2g29890	chr2:012744597	0.0	W/12744597-12744652,12744736-12744835,12744918-12744986,12745071-12745304,12745403-12745580,12745667-12745799,12745931-12746096,12746236-12746386,12746484-12746572,12746642-12746797,12746891-12746959,12747070-12747276,12747354-12747482,12747606-12747759,12747870-12747880,12747981-12748121,12748305-12748430,12748570-12748632,12748699-12748921,12749112-12749278,12749361-12749474	AT2G29890.2  CDS  gene_syn ATVLN1, F6K5.2, F6K5_2, VILLIN-LIKE 1, VLN1  gene VLN1  function Encodes a ubiquitously expressed villin-like protein, whose mRNA may be alternatively processed. Villin belongs to a superfamily of actin binding proteins called the villin/gelsolin family. Animal villins are involved in actin binding. VLN1 protein co-localizes with actin filaments in several assays. VLN1 binds and bundles F-actin in a calcium-independent manner. It does not nucleate, cap or sever actin filaments and it stabilizes actin filaments, protecting them from ADF-mediated depolymerization.  go_component actin cytoskeleton|GO:0015629|10631247|IDA  go_process cytoskeleton organization|GO:0007010||ISS  go_process actin filament organization|GO:0007015|15659626|IPI  go_process actin filament depolymerization|GO:0030042|15659626|IDA  go_process negative regulation of actin filament depolymerization|GO:0030835|15659626|IDA  go_process actin nucleation|GO:0045010|15659626|IDA  go_process actin filament severing|GO:0051014|15659626|IDA  go_process barbed-end actin filament capping|GO:0051016|15659626|IDA  go_function actin binding|GO:0003779|10631247|IDA  go_function actin binding|GO:0003779||ISS  go_function actin filament binding|GO:0051015|15659626|IPI  product VLN1 (VILLIN-LIKE 1); actin binding / actin filament binding  note VILLIN-LIKE 1 (VLN1); FUNCTIONS IN: actin binding, actin filament binding; INVOLVED IN: in 7 processes; LOCATED IN: actin cytoskeleton; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Gelsolin (InterPro:IPR007122), Villin headpiece (InterPro:IPR003128), Gelsolin region (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: villin, putative (TAIR:AT5G57320.1); Has 2654 Blast hits to 1429 proteins in 128 species: Archae - 0; Bacteria - 0; Metazoa - 2183; Fungi - 77; Plants - 127; Viruses - 0; Other Eukaryotes - 267 (source: NCBI BLink).  protein_id AT2G29890.2p  transcript_id AT2G29890.2  protein_id AT2G29890.2p  transcript_id AT2G29890.2  
At2g29900	chr2:012749837	0.0	W/12749837-12751030	AT2G29900.1  CDS  gene_syn F6K5.3, F6K5_3  go_component integral to membrane|GO:0016021||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_component membrane|GO:0016020||ISS  go_process intracellular signaling cascade|GO:0007242||ISS  go_function molecular_function|GO:0003674||ND  product presenilin family protein  note presenilin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular signaling cascade; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22A, presenilin (InterPro:IPR001108); BEST Arabidopsis thaliana protein match is: presenilin family protein (TAIR:AT1G08700.1); Has 387 Blast hits to 371 proteins in 85 species: Archae - 2; Bacteria - 0; Metazoa - 302; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT2G29900.1p  transcript_id AT2G29900.1  protein_id AT2G29900.1p  transcript_id AT2G29900.1  
At2g29910	chr2:012751823	0.0	C/12751823-12752830	AT2G29910.2  CDS  gene_syn F6K5.4, F6K5_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G29930.3); Has 1090 Blast hits to 1073 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1090; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G29910.2p  transcript_id AT2G29910.2  protein_id AT2G29910.2p  transcript_id AT2G29910.2  
At2g29910	chr2:012751895	0.0	C/12751895-12752830,12751686-12751808	AT2G29910.1  CDS  gene_syn F6K5.4, F6K5_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G29930.3); Has 1107 Blast hits to 1086 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G29910.1p  transcript_id AT2G29910.1  protein_id AT2G29910.1p  transcript_id AT2G29910.1  
At2g29920	chr2:012754494	0.0	W/12754494-12754539,12754601-12754692,12754794-12754883,12755049-12755384	AT2G29920.1  CDS  gene_syn F6K5.5, F6K5_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, 4 leaf senescence stage, petal differentiation and expansion stage, E expanded cotyledon stage; Has 52 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 2; Metazoa - 45; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G29920.1p  transcript_id AT2G29920.1  protein_id AT2G29920.1p  transcript_id AT2G29920.1  
At2g29930	chr2:012757185	0.0	C/12757185-12757727,12756931-12757071,12756457-12756792	AT2G29930.2  CDS  gene_syn F6K5.6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G21990.1); Has 531 Blast hits to 523 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 531; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G29930.2p  transcript_id AT2G29930.2  protein_id AT2G29930.2p  transcript_id AT2G29930.2  
At2g29930	chr2:012757185	0.0	C/12757185-12758087,12756931-12757071,12756457-12756792	AT2G29930.1  CDS  gene_syn F6K5.6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G21990.1); Has 1101 Blast hits to 1076 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G29930.1p  transcript_id AT2G29930.1  protein_id AT2G29930.1p  transcript_id AT2G29930.1  
At2g29930	chr2:012757185	0.0	C/12757185-12758087,12756931-12757071,12756457-12756792	AT2G29930.3  CDS  gene_syn F6K5.6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G21990.1); Has 1101 Blast hits to 1076 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G29930.3p  transcript_id AT2G29930.3  protein_id AT2G29930.3p  transcript_id AT2G29930.3  
At2g29940	chr2:012760139	0.0	W/12760139-12760488,12760598-12760718,12760800-12760888,12760970-12761054,12761186-12761348,12761445-12761521,12761601-12761745,12761834-12762135,12762212-12762493,12762813-12763129,12763221-12763381,12763475-12763578,12763668-12763824,12763914-12764077,12764163-12764495,12764574-12764864,12764973-12765056,12765155-12765288,12765361-12766015,12766189-12766455	AT2G29940.1  CDS  gene_syn ATPDR3, F23F1.14, F23F1_14, PDR3, PLEIOTROPIC DRUG RESISTANCE 3  gene PDR3  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855|16506311|ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product PDR3 (PLEIOTROPIC DRUG RESISTANCE 3); ATPase, coupled to transmembrane movement of substances  note PLEIOTROPIC DRUG RESISTANCE 3 (PDR3); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: multidrug transport; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 (InterPro:IPR000412), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PEN3 (PENETRATION 3); ATPase, coupled to transmembrane movement of substances / cadmium ion transmembrane transporter (TAIR:AT1G59870.1); Has 233604 Blast hits to 173914 proteins in 2540 species: Archae - 4618; Bacteria - 167945; Metazoa - 8057; Fungi - 4585; Plants - 3017; Viruses - 4; Other Eukaryotes - 45378 (source: NCBI BLink).  protein_id AT2G29940.1p  transcript_id AT2G29940.1  protein_id AT2G29940.1p  transcript_id AT2G29940.1  
At2g29950	chr2:012767790	0.0	W/12767790-12768167	AT2G29950.1  CDS  gene_syn ELF4-L1, ELF4-Like 1, F23F1.13, F23F1_13  gene ELF4-L1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ELF4-L1 (ELF4-Like 1)  note ELF4-Like 1 (ELF4-L1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1313 (InterPro:IPR009741); BEST Arabidopsis thaliana protein match is: ELF4 (EARLY FLOWERING 4) (TAIR:AT2G40080.1); Has 68 Blast hits to 67 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G29950.1p  transcript_id AT2G29950.1  protein_id AT2G29950.1p  transcript_id AT2G29950.1  
At2g29960	chr2:012770463	0.0	C/12770463-12770528,12770203-12770272,12770015-12770062,12769886-12769909,12769481-12769663,12769183-12769367	AT2G29960.2  CDS  gene_syn ARABIDOPSIS THALIANA CYCLOPHILIN 5, ATCYP5, CYCLOPHILIN 19-4, CYCLOPHILIN 5, CYP19-4, CYP5, F23F1.12, F23F1_12  gene CYP5  function encodes a cyclophilin protein that exhibits peptidylprolyl cis/trans-isomerase and protein refolding activities that were sensitive to cyclosporin A. The protein interacts with GNOM in vitro and is localized to both the cytosolic and membrane fractions. The gene is expressed in the developing embryo.  go_component membrane fraction|GO:0005624|10715321|IDA  go_component multivesicular body|GO:0005771|18203920|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum|GO:0005783|18203920|IDA  go_component Golgi stack|GO:0005795|18203920|IDA  go_component cytosol|GO:0005829|10715321|IDA  go_process protein folding|GO:0006457||ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755|10715321|IDA  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product CYP5 (CYCLOPHILIN 5); peptidyl-prolyl cis-trans isomerase  note CYCLOPHILIN 5 (CYP5); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: cytosol, Golgi stack, endoplasmic reticulum, membrane fraction, multivesicular body; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: ROC7; peptidyl-prolyl cis-trans isomerase (TAIR:AT5G58710.1); Has 10912 Blast hits to 10890 proteins in 1506 species: Archae - 82; Bacteria - 3504; Metazoa - 2374; Fungi - 948; Plants - 729; Viruses - 4; Other Eukaryotes - 3271 (source: NCBI BLink).  protein_id AT2G29960.2p  transcript_id AT2G29960.2  protein_id AT2G29960.2p  transcript_id AT2G29960.2  
At2g29960	chr2:012770463	0.0	C/12770463-12770528,12770203-12770272,12770015-12770062,12769886-12769909,12769481-12769663,12769183-12769397	AT2G29960.1  CDS  gene_syn ARABIDOPSIS THALIANA CYCLOPHILIN 5, ATCYP5, CYCLOPHILIN 19-4, CYCLOPHILIN 5, CYP19-4, CYP5, F23F1.12, F23F1_12  gene CYP5  function encodes a cyclophilin protein that exhibits peptidylprolyl cis/trans-isomerase and protein refolding activities that were sensitive to cyclosporin A. The protein interacts with GNOM in vitro and is localized to both the cytosolic and membrane fractions. The gene is expressed in the developing embryo.  go_component membrane fraction|GO:0005624|10715321|IDA  go_component multivesicular body|GO:0005771|18203920|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum|GO:0005783|18203920|IDA  go_component Golgi stack|GO:0005795|18203920|IDA  go_component cytosol|GO:0005829|10715321|IDA  go_process protein folding|GO:0006457||ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755|10715321|IDA  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product CYP5 (CYCLOPHILIN 5); peptidyl-prolyl cis-trans isomerase  note CYCLOPHILIN 5 (CYP5); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: cytosol, Golgi stack, endoplasmic reticulum, membrane fraction, multivesicular body; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: ROC7; peptidyl-prolyl cis-trans isomerase (TAIR:AT5G58710.1); Has 11483 Blast hits to 11467 proteins in 1521 species: Archae - 82; Bacteria - 3686; Metazoa - 2392; Fungi - 955; Plants - 737; Viruses - 4; Other Eukaryotes - 3627 (source: NCBI BLink).  protein_id AT2G29960.1p  transcript_id AT2G29960.1  protein_id AT2G29960.1p  transcript_id AT2G29960.1  
At2g29970	chr2:012776601	0.0	W/12776601-12777760,12777848-12778088,12778177-12779784	AT2G29970.1  CDS  gene_syn F23F1.11, F23F1_11  go_component cellular_component|GO:0005575||ND  product heat shock protein-related  note heat shock protein-related; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: ATP-dependent Clp protease ClpB protein-related (TAIR:AT1G07200.2); Has 6123 Blast hits to 5857 proteins in 1355 species: Archae - 9; Bacteria - 4691; Metazoa - 4; Fungi - 100; Plants - 301; Viruses - 0; Other Eukaryotes - 1018 (source: NCBI BLink).  protein_id AT2G29970.1p  transcript_id AT2G29970.1  protein_id AT2G29970.1p  transcript_id AT2G29970.1  
At2g29980	chr2:012784639	0.0	C/12784639-12784946,12783926-12784015,12783313-12783379,12782741-12782833,12782468-12782653,12782257-12782379	AT2G29980.2  CDS  gene_syn ENDOPLASMIC RETICULUM 18:2 DESATURASE, F23F1.10, F23F1_10, FAD3, FATTY ACID DESATURASE 3, OMEGA-3 FATTY ACID DESATURASE  gene FAD3  function Endoplasmic reticulum enzyme responsible for the synthesis of 18:3 fatty acids from phospholipids. Uses cytochrome b5 as electron donor.  go_component endoplasmic reticulum|GO:0005783|8102138|IMP  go_process unsaturated fatty acid biosynthetic process|GO:0006636|8102138|IMP  go_function omega-3 fatty acid desaturase activity|GO:0042389|8029334|IGI  go_function omega-3 fatty acid desaturase activity|GO:0042389|8102138|IMP  product FAD3 (FATTY ACID DESATURASE 3); omega-3 fatty acid desaturase  note FATTY ACID DESATURASE 3 (FAD3); FUNCTIONS IN: omega-3 fatty acid desaturase activity; INVOLVED IN: unsaturated fatty acid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: FAD8 (FATTY ACID DESATURASE 8); omega-3 fatty acid desaturase (TAIR:AT5G05580.1); Has 1640 Blast hits to 1640 proteins in 414 species: Archae - 0; Bacteria - 480; Metazoa - 15; Fungi - 169; Plants - 707; Viruses - 0; Other Eukaryotes - 269 (source: NCBI BLink).  protein_id AT2G29980.2p  transcript_id AT2G29980.2  protein_id AT2G29980.2p  transcript_id AT2G29980.2  
At2g29980	chr2:012784639	0.0	C/12784639-12784946,12783926-12784015,12783313-12783379,12782741-12782833,12782468-12782653,12782299-12782379,12782083-12782220,12781787-12781984	AT2G29980.1  CDS  gene_syn ENDOPLASMIC RETICULUM 18:2 DESATURASE, F23F1.10, F23F1_10, FAD3, FATTY ACID DESATURASE 3, OMEGA-3 FATTY ACID DESATURASE  gene FAD3  function Endoplasmic reticulum enzyme responsible for the synthesis of 18:3 fatty acids from phospholipids. Uses cytochrome b5 as electron donor.  go_component endoplasmic reticulum|GO:0005783|8102138|IMP  go_process unsaturated fatty acid biosynthetic process|GO:0006636|8102138|IMP  go_function omega-3 fatty acid desaturase activity|GO:0042389|8029334|IGI  go_function omega-3 fatty acid desaturase activity|GO:0042389|8102138|IMP  product FAD3 (FATTY ACID DESATURASE 3); omega-3 fatty acid desaturase  note FATTY ACID DESATURASE 3 (FAD3); FUNCTIONS IN: omega-3 fatty acid desaturase activity; INVOLVED IN: unsaturated fatty acid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: FAD8 (FATTY ACID DESATURASE 8); omega-3 fatty acid desaturase (TAIR:AT5G05580.1); Has 1924 Blast hits to 1923 proteins in 469 species: Archae - 0; Bacteria - 635; Metazoa - 17; Fungi - 171; Plants - 714; Viruses - 0; Other Eukaryotes - 387 (source: NCBI BLink).  protein_id AT2G29980.1p  transcript_id AT2G29980.1  protein_id AT2G29980.1p  transcript_id AT2G29980.1  
At2g29990	chr2:012795440	0.0	C/12795440-12795913,12794928-12795141,12794685-12794845,12794538-12794603,12794280-12794443,12794080-12794194,12793789-12793968,12793562-12793714	AT2G29990.1  CDS  gene_syn ALTERNATIVE NAD(P)H DEHYDROGENASE 2, F23F1.9, F23F1_9, NDA2  gene NDA2  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_component intrinsic to mitochondrial inner membrane|GO:0031304|16258072|IDA  go_function NADH dehydrogenase activity|GO:0003954||ISS  product NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2); FAD binding / NADH dehydrogenase/ oxidoreductase  note ALTERNATIVE NAD(P)H DEHYDROGENASE 2 (NDA2); FUNCTIONS IN: NADH dehydrogenase activity, oxidoreductase activity, FAD binding; LOCATED IN: intrinsic to mitochondrial inner membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1); NADH dehydrogenase (TAIR:AT1G07180.1); Has 6371 Blast hits to 6256 proteins in 1243 species: Archae - 141; Bacteria - 4567; Metazoa - 49; Fungi - 428; Plants - 224; Viruses - 0; Other Eukaryotes - 962 (source: NCBI BLink).  protein_id AT2G29990.1p  transcript_id AT2G29990.1  protein_id AT2G29990.1p  transcript_id AT2G29990.1  
At2g29995	chr2:012799247	0.0	C/12799247-12799343,12797137-12797255	AT2G29995.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07175.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G29995.1p  transcript_id AT2G29995.1  protein_id AT2G29995.1p  transcript_id AT2G29995.1  
At2g30000	chr2:012804042	0.0	C/12804042-12804374	AT2G30000.1  CDS  gene_syn F23F1.8, F23F1_8  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PHF5-like (InterPro:IPR005345); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07170.2); Has 292 Blast hits to 292 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 75; Plants - 47; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT2G30000.1p  transcript_id AT2G30000.1  protein_id AT2G30000.1p  transcript_id AT2G30000.1  
At2g30010	chr2:012805833	0.0	W/12805833-12806167,12806785-12806956,12807551-12807732,12807856-12808014,12808878-12809226	AT2G30010.1  CDS  gene_syn F23F1.7, F23F1_7  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: PMR5 (POWDERY MILDEW RESISTANT 5) (TAIR:AT5G58600.1); Has 709 Blast hits to 698 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 709; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G30010.1p  transcript_id AT2G30010.1  protein_id AT2G30010.1p  transcript_id AT2G30010.1  
At2g30020	chr2:012814437	0.0	W/12814437-12814940,12815218-12815904	AT2G30020.1  CDS  gene_syn AP2C1, F23F1.6, F23F1_6  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_component chloroplast|GO:0009507||IEA  go_process response to wounding|GO:0009611|17630279|IEP  go_process response to wounding|GO:0009611|17953483|IEP  go_process response to fungus|GO:0009620|17630279|IEP  go_process defense response to fungus|GO:0050832|17630279|IMP  go_function protein serine/threonine phosphatase activity|GO:0004722|17630279|IDA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: defense response to fungus, response to fungus, response to wounding; LOCATED IN: chloroplast, protein serine/threonine phosphatase complex; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT1G07160.1); Has 4574 Blast hits to 4418 proteins in 318 species: Archae - 2; Bacteria - 193; Metazoa - 1512; Fungi - 545; Plants - 1316; Viruses - 9; Other Eukaryotes - 997 (source: NCBI BLink).  protein_id AT2G30020.1p  transcript_id AT2G30020.1  protein_id AT2G30020.1p  transcript_id AT2G30020.1  
At2g30032	chr2:012819529	0.0	C/12819529-12819654	AT2G30032.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G30032.1p  transcript_id AT2G30032.1  protein_id AT2G30032.1p  transcript_id AT2G30032.1  
At2g30040	chr2:012821747	0.0	W/12821747-12823138	AT2G30040.1  CDS  gene_syn F23F1.4, F23F1_4, MAPKKK14  gene MAPKKK14  function member of MEKK subfamily  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product MAPKKK14; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note MAPKKK14; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: MAPKKK13; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT1G07150.1); Has 80099 Blast hits to 79303 proteins in 1906 species: Archae - 65; Bacteria - 6411; Metazoa - 35416; Fungi - 7503; Plants - 15065; Viruses - 432; Other Eukaryotes - 15207 (source: NCBI BLink).  protein_id AT2G30040.1p  transcript_id AT2G30040.1  protein_id AT2G30040.1p  transcript_id AT2G30040.1  
At2g30050	chr2:012825540	0.0	W/12825540-12826448	AT2G30050.1  CDS  gene_syn T27E13.21, T27E13_21  go_component nucleolus|GO:0005730|15496452|IDA  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_process membrane budding|GO:0006900|8432727|ISS  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: membrane budding; LOCATED IN: nucleolus, heterotrimeric G-protein complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: protein transport protein SEC13 family protein / WD-40 repeat family protein (TAIR:AT3G01340.2); Has 17874 Blast hits to 11059 proteins in 424 species: Archae - 20; Bacteria - 3197; Metazoa - 7446; Fungi - 3482; Plants - 1374; Viruses - 0; Other Eukaryotes - 2355 (source: NCBI BLink).  protein_id AT2G30050.1p  transcript_id AT2G30050.1  protein_id AT2G30050.1p  transcript_id AT2G30050.1  
At2g30060	chr2:012827035	0.0	W/12827035-12827195,12827319-12827470,12827569-12827694,12828337-12828551	AT2G30060.1  CDS  gene_syn T27E13.20, T27E13_20  go_process intracellular transport|GO:0046907||IEA  go_component cellular_component|GO:0005575||ND  go_process protein import into nucleus, translocation|GO:0000060||ISS  go_function Ran GTPase binding|GO:0008536||ISS  product Ran-binding protein 1b (RanBP1b)  note Ran-binding protein 1b (RanBP1b); FUNCTIONS IN: Ran GTPase binding; INVOLVED IN: intracellular transport, protein import into nucleus, translocation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ran Binding Protein 1 (InterPro:IPR000156), Pleckstrin homology-type (InterPro:IPR011993); BEST Arabidopsis thaliana protein match is: SIRANBP; Ran GTPase binding (TAIR:AT1G07140.1); Has 1190 Blast hits to 924 proteins in 176 species: Archae - 0; Bacteria - 3; Metazoa - 728; Fungi - 225; Plants - 88; Viruses - 2; Other Eukaryotes - 144 (source: NCBI BLink).  protein_id AT2G30060.1p  transcript_id AT2G30060.1  protein_id AT2G30060.1p  transcript_id AT2G30060.1  
At2g30070	chr2:012835097	0.0	W/12835097-12835141,12835796-12836039,12836128-12836373,12836449-12836499,12836588-12836848,12836942-12836994,12837068-12837182,12837266-12837520,12837598-12838466	AT2G30070.1  CDS  gene_syn ATKT1, ATKT1P, ATKUP1, KUP1, POTASSIUM TRANSPORTER 1, POTASSIUM TRANSPORTER KUP1, POTASSIUM UPTAKE TRANSPORTER 1, T27E13.19, T27E13_19  gene ATKT1  function Encodes a high affinity potassium transporter.  go_component membrane|GO:0016020|11500563|NAS  go_process potassium ion transport|GO:0006813|9477572|IC  go_function potassium ion transmembrane transporter activity|GO:0015079|9350997|ISS  go_function potassium ion transmembrane transporter activity|GO:0015079|9477572|IGI  go_function potassium ion transmembrane transporter activity|GO:0015079||ISS  product ATKT1 (POTASSIUM TRANSPORTER 1); potassium ion transmembrane transporter  note POTASSIUM TRANSPORTER 1 (ATKT1); FUNCTIONS IN: potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Potassium uptake protein, kup (InterPro:IPR018519), K+ potassium transporter (InterPro:IPR003855); BEST Arabidopsis thaliana protein match is: potassium transporter, putative (TAIR:AT5G14880.1); Has 2130 Blast hits to 1980 proteins in 581 species: Archae - 13; Bacteria - 1380; Metazoa - 0; Fungi - 57; Plants - 556; Viruses - 4; Other Eukaryotes - 120 (source: NCBI BLink).  protein_id AT2G30070.1p  transcript_id AT2G30070.1  protein_id AT2G30070.1p  transcript_id AT2G30070.1  
At2g30080	chr2:012839414	0.0	C/12839414-12840112,12838730-12839056	AT2G30080.1  CDS  gene_syn ATZIP6, T27E13.18, T27E13_18, ZIP6  gene ZIP6  function member of Fe(II) transporter isolog family. Gene expression is not regulated by iron, copper, or zinc deficiency or excess.  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|ISS  go_process cation transport|GO:0006812||ISS  go_process response to nematode|GO:0009624|16478044|IEP  go_function cation transmembrane transporter activity|GO:0008324|11500563|ISS  go_function cation transmembrane transporter activity|GO:0008324||ISS  go_function metal ion transmembrane transporter activity|GO:0046873||ISS  product ZIP6; cation transmembrane transporter/ metal ion transmembrane transporter  note ZIP6; FUNCTIONS IN: cation transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: cation transport, response to nematode; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal and plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: ZIP5; cation transmembrane transporter/ metal ion transmembrane transporter (TAIR:AT1G05300.1); Has 1219 Blast hits to 1135 proteins in 182 species: Archae - 0; Bacteria - 42; Metazoa - 307; Fungi - 405; Plants - 318; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink).  protein_id AT2G30080.1p  transcript_id AT2G30080.1  protein_id AT2G30080.1p  transcript_id AT2G30080.1  
At2g30090	chr2:012845403	0.0	C/12845403-12845597,12844449-12844799,12843583-12844197	AT2G30090.1  CDS  gene_syn T27E13.17, T27E13_17  go_process metabolic process|GO:0008152||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product GCN5-related N-acetyltransferase (GNAT) family protein  note GCN5-related N-acetyltransferase (GNAT) family protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, male gametophyte, sepal; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: HLS1 (HOOKLESS 1); N-acetyltransferase (TAIR:AT4G37580.1); Has 201 Blast hits to 201 proteins in 56 species: Archae - 14; Bacteria - 16; Metazoa - 111; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT2G30090.1p  transcript_id AT2G30090.1  protein_id AT2G30090.1p  transcript_id AT2G30090.1  
At2g30100	chr2:012847828	0.0	W/12847828-12848559,12848741-12849454,12849711-12850005,12850097-12850191,12850319-12850477,12850617-12850727,12850820-12850920,12851142-12851279,12851396-12851510,12851589-12851708,12851795-12851908	AT2G30100.1  CDS  gene_syn T27E13.16, T27E13_16  go_component chloroplast|GO:0009507||IEA  go_process protein modification process|GO:0006464||IEA  go_function protein binding|GO:0005515||IEA  product ubiquitin family protein  note ubiquitin family protein; FUNCTIONS IN: protein binding; INVOLVED IN: protein modification process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT5G07910.1); Has 49459 Blast hits to 21753 proteins in 854 species: Archae - 27; Bacteria - 5242; Metazoa - 23124; Fungi - 1700; Plants - 16412; Viruses - 2; Other Eukaryotes - 2952 (source: NCBI BLink).  protein_id AT2G30100.1p  transcript_id AT2G30100.1  protein_id AT2G30100.1p  transcript_id AT2G30100.1  
At2g30110	chr2:012857039	0.0	C/12857039-12857369,12856459-12856676,12855367-12856161,12854086-12854954,12853328-12853760,12852632-12853228	AT2G30110.1  CDS  gene_syn ATUBA1, Arabidopsis thaliana ubiquitin-activating enzyme 1, T27E13.15, T27E13_15, mos5  gene ATUBA1  function Encodes a ubiquitin-activating enzyme (E1), involved in the first step in conjugating multiple ubiquitins to proteins targeted for degradation. Gene is expressed in most tissues examined. Mutant is able to revert the constitutive defense responses phenotype of snc1, which indicates the gene is involved in defense response. It also indicates that ubiquitination plays a role in plant defense signalling.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process protein ubiquitination|GO:0016567|9076989|IDA  go_process response to other organism|GO:0051707|17217463|IMP  go_function ubiquitin activating enzyme activity|GO:0004839|9076989|IMP  go_function ubiquitin activating enzyme activity|GO:0004839||ISS  go_function ubiquitin-protein ligase activity|GO:0004842|9076989|IDA  product ATUBA1; ubiquitin activating enzyme/ ubiquitin-protein ligase  note ATUBA1; FUNCTIONS IN: ubiquitin-protein ligase activity, ubiquitin activating enzyme activity; INVOLVED IN: response to cadmium ion, response to other organism, ubiquitin-dependent protein catabolic process, protein ubiquitination; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-activating enzyme repeat (InterPro:IPR000127), Ubiquitin-activating enzyme, E1, active site (InterPro:IPR018074), UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594), Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), Ubiquitin-activating enzyme, E1 (InterPro:IPR018075), NAD(P)-binding (InterPro:IPR016040), Ubiquitin-activating enzyme, E1-like (InterPro:IPR000011); BEST Arabidopsis thaliana protein match is: ATUBA2; ubiquitin activating enzyme/ ubiquitin-protein ligase (TAIR:AT5G06460.1); Has 12711 Blast hits to 8023 proteins in 1304 species: Archae - 249; Bacteria - 5840; Metazoa - 1735; Fungi - 885; Plants - 421; Viruses - 0; Other Eukaryotes - 3581 (source: NCBI BLink).  protein_id AT2G30110.1p  transcript_id AT2G30110.1  protein_id AT2G30110.1p  transcript_id AT2G30110.1  
At2g30115	chr2:012858462	0.0	W/12858462-12860142	AT2G30115.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  note similar to microtubule associated protein (MAP65/ASE1) family protein [Arabidopsis thaliana] (TAIR:AT2G38720.1)  transcript_id AT2G30115.1  
At2g30120	chr2:012861332	0.0	C/12861332-12861862	AT2G30120.1  CDS  gene_syn T27E13.14, T27E13_14  product unknown protein  note unknown protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 174 Blast hits to 142 proteins in 31 species: Archae - 2; Bacteria - 11; Metazoa - 15; Fungi - 2; Plants - 97; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT2G30120.1p  transcript_id AT2G30120.1  protein_id AT2G30120.1p  transcript_id AT2G30120.1  
At2g30120	chr2:012861336	0.0	C/12861336-12861862,12861025-12861200,12860847-12860938,12860607-12860678	AT2G30120.2  CDS  gene_syn T27E13.14, T27E13_14  product unknown protein  note unknown protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1).  protein_id AT2G30120.2p  transcript_id AT2G30120.2  protein_id AT2G30120.2p  transcript_id AT2G30120.2  
At2g30130	chr2:012868740	0.0	W/12868740-12868901,12869265-12869684	AT2G30130.1  CDS  gene_syn ASL5, LBD12, PCK1, PEACOCK 1, T27E13.13, T27E13_13  gene ASL5  function Overexpression/activation tagged allele has epinastic leaves, reduced apical dominance and is sterile. Gene is similar to asymmetric leaves (AS)/lateral organ boundary (LOB) genes which repress KNOX gene expression.  go_process leaf morphogenesis|GO:0009965|12787254|IMP  go_process shoot morphogenesis|GO:0010016|12787254|IMP  go_function DNA binding|GO:0003677|12040093|TAS  go_function protein binding|GO:0005515|12040093|TAS  product ASL5; DNA binding / protein binding  note ASL5; FUNCTIONS IN: protein binding, DNA binding; INVOLVED IN: shoot morphogenesis, leaf morphogenesis; EXPRESSED IN: sepal, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD4 (LOB DOMAIN-CONTAINING PROTEIN 4) (TAIR:AT1G31320.1); Has 713 Blast hits to 708 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 588; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).  protein_id AT2G30130.1p  transcript_id AT2G30130.1  protein_id AT2G30130.1p  transcript_id AT2G30130.1  
At2g30140	chr2:012872200	0.0	W/12872200-12872695,12872820-12873691	AT2G30140.1  CDS  gene_syn T27E13.12, T27E13_12  go_component cellular_component|GO:0005575||ND  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: response to cyclopentenone; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT2G30150.1); Has 4918 Blast hits to 4893 proteins in 329 species: Archae - 0; Bacteria - 176; Metazoa - 1935; Fungi - 13; Plants - 2686; Viruses - 76; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT2G30140.1p  transcript_id AT2G30140.1  protein_id AT2G30140.1p  transcript_id AT2G30140.1  
At2g30140	chr2:012872200	0.0	W/12872200-12872695,12872823-12873691	AT2G30140.2  CDS  gene_syn T27E13.12, T27E13_12  go_component cellular_component|GO:0005575||ND  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: response to cyclopentenone; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT2G30150.1); Has 4916 Blast hits to 4891 proteins in 330 species: Archae - 0; Bacteria - 170; Metazoa - 1937; Fungi - 13; Plants - 2688; Viruses - 76; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT2G30140.2p  transcript_id AT2G30140.2  protein_id AT2G30140.2p  transcript_id AT2G30140.2  
At2g30150	chr2:012874706	0.0	W/12874706-12875150,12875245-12876122	AT2G30150.1  CDS  gene_syn T27E13.11, T27E13_11  go_process metabolic process|GO:0008152||IEA  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT2G30140.1); Has 4165 Blast hits to 4145 proteins in 300 species: Archae - 0; Bacteria - 157; Metazoa - 1277; Fungi - 8; Plants - 2672; Viruses - 38; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT2G30150.1p  transcript_id AT2G30150.1  protein_id AT2G30150.1p  transcript_id AT2G30150.1  
At2g30160	chr2:012878016	0.0	W/12878016-12878804,12879171-12879377	AT2G30160.1  CDS  gene_syn T27E13.10, T27E13_10  go_component mitochondrial inner membrane|GO:0005743||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function binding|GO:0005488||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: transporter activity, binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: mitochondrial substrate carrier family protein (TAIR:AT1G07030.1); Has 19907 Blast hits to 9920 proteins in 357 species: Archae - 0; Bacteria - 0; Metazoa - 10201; Fungi - 5005; Plants - 2875; Viruses - 0; Other Eukaryotes - 1826 (source: NCBI BLink).  protein_id AT2G30160.1p  transcript_id AT2G30160.1  protein_id AT2G30160.1p  transcript_id AT2G30160.1  
At2g30170	chr2:012881021	0.0	C/12881021-12881046,12880778-12880930,12880609-12880688,12880428-12880525,12880227-12880350,12880074-12880156,12879948-12879996,12879802-12879854	AT2G30170.2  CDS  gene_syn T27E13.9, T27E13_9  go_component chloroplast|GO:0009507|18431481|IDA  go_function catalytic activity|GO:0003824||IEA  go_process biological_process|GO:0008150||ND  product catalytic  note catalytic; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932); BEST Arabidopsis thaliana protein match is: 5-azacytidine resistance protein -related (TAIR:AT5G66720.2); Has 580 Blast hits to 578 proteins in 170 species: Archae - 0; Bacteria - 46; Metazoa - 150; Fungi - 147; Plants - 113; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).  protein_id AT2G30170.2p  transcript_id AT2G30170.2  protein_id AT2G30170.2p  transcript_id AT2G30170.2  
At2g30170	chr2:012881350	0.0	C/12881350-12881474,12881211-12881262,12881021-12881100,12880778-12880930,12880609-12880688,12880428-12880525,12880227-12880350,12880074-12880156,12879948-12879996,12879802-12879854	AT2G30170.1  CDS  gene_syn T27E13.9, T27E13_9  go_component chloroplast|GO:0009507|18431481|IDA  go_function catalytic activity|GO:0003824||IEA  go_process biological_process|GO:0008150||ND  product catalytic  note catalytic; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932); BEST Arabidopsis thaliana protein match is: 5-azacytidine resistance protein -related (TAIR:AT5G66720.2); Has 637 Blast hits to 627 proteins in 184 species: Archae - 2; Bacteria - 71; Metazoa - 153; Fungi - 150; Plants - 121; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink).  protein_id AT2G30170.1p  transcript_id AT2G30170.1  protein_id AT2G30170.1p  transcript_id AT2G30170.1  
At2g30180	chr2:012881591	0.0	W/12881591-12881661	AT2G30180.1  tRNA  gene_syn 22505.TRNA-GLY-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: GCC)  transcript_id AT2G30180.1  
At2g30190	chr2:012882734	0.0	W/12882734-12882804	AT2G30190.1  tRNA  gene_syn 22505.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: GCC)  transcript_id AT2G30190.1  
At2g30200	chr2:012885192	0.0	C/12885192-12885482,12884858-12884943,12884714-12884780,12884411-12884553,12884195-12884243,12883912-12884049,12883747-12883827,12883485-12883661,12883312-12883398,12883162-12883224	AT2G30200.1  CDS  gene_syn T27E13.6, T27E13_6  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process fatty acid biosynthetic process|GO:0006633||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function [acyl-carrier-protein] S-malonyltransferase activity|GO:0004314||IEA  go_function binding|GO:0005488||IEA  go_function transferase activity|GO:0016740||IEA  product [acyl-carrier-protein] S-malonyltransferase/ binding / catalytic/ transferase  note [acyl-carrier-protein] S-malonyltransferase/ binding / catalytic/ transferase; FUNCTIONS IN: binding, transferase activity, [acyl-carrier-protein] S-malonyltransferase activity, catalytic activity; INVOLVED IN: fatty acid biosynthetic process, metabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Malonyl CoA-acyl carrier protein transacylase (InterPro:IPR004410), Acyl transferase region (InterPro:IPR001227), Acyl transferase (InterPro:IPR014043), Malonyl-CoA ACP transacylase, ACP-binding (InterPro:IPR016036); Has 10358 Blast hits to 9483 proteins in 1551 species: Archae - 0; Bacteria - 6429; Metazoa - 193; Fungi - 844; Plants - 33; Viruses - 0; Other Eukaryotes - 2859 (source: NCBI BLink).  protein_id AT2G30200.1p  transcript_id AT2G30200.1  protein_id AT2G30200.1p  transcript_id AT2G30200.1  
At2g30200	chr2:012885192	0.0	C/12885192-12885482,12884858-12884943,12884714-12884780,12884411-12884553,12884195-12884243,12883912-12884049,12883747-12883827,12883485-12883661,12883340-12883417	AT2G30200.2  CDS  gene_syn T27E13.6, T27E13_6  go_component chloroplast|GO:0009507|18431481|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function transferase activity|GO:0016740||IEA  product binding / catalytic/ transferase  note binding / catalytic/ transferase; FUNCTIONS IN: binding, transferase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Acyl transferase region (InterPro:IPR001227), Malonyl-CoA ACP transacylase, ACP-binding (InterPro:IPR016036); Has 9715 Blast hits to 8896 proteins in 1540 species: Archae - 0; Bacteria - 6256; Metazoa - 181; Fungi - 763; Plants - 32; Viruses - 0; Other Eukaryotes - 2483 (source: NCBI BLink).  protein_id AT2G30200.2p  transcript_id AT2G30200.2  protein_id AT2G30200.2p  transcript_id AT2G30200.2  
At2g30210	chr2:012889729	0.0	C/12889729-12889827,12889483-12889634,12889147-12889391,12887979-12889064,12887735-12887865	AT2G30210.1  CDS  gene_syn LAC3, T9D9.2, laccase 3  gene LAC3  function putative laccase, a member of laccase family of genes (17 members in Arabidopsis).  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process lignin catabolic process|GO:0046274||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function laccase activity|GO:0008471|15940465|ISS  product LAC3 (laccase 3); laccase  note laccase 3 (LAC3); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: fruit, hypocotyl, root, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: LAC13 (laccase 13); laccase (TAIR:AT5G07130.1); Has 7398 Blast hits to 6119 proteins in 990 species: Archae - 17; Bacteria - 2983; Metazoa - 480; Fungi - 2630; Plants - 892; Viruses - 0; Other Eukaryotes - 396 (source: NCBI BLink).  protein_id AT2G30210.1p  transcript_id AT2G30210.1  protein_id AT2G30210.1p  transcript_id AT2G30210.1  
At2g30220	chr2:012891914	0.0	C/12891914-12892537,12891555-12891813,12891266-12891459	AT2G30220.1  CDS  gene_syn T9D9.3, T9D9_3  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT2G30310.1); Has 1773 Blast hits to 1752 proteins in 152 species: Archae - 0; Bacteria - 187; Metazoa - 1; Fungi - 16; Plants - 1549; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT2G30220.1p  transcript_id AT2G30220.1  protein_id AT2G30220.1p  transcript_id AT2G30220.1  
At2g30230	chr2:012897156	0.0	W/12897156-12897689	AT2G30230.1  CDS  gene_syn T9D9.4  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06980.1); Has 86 Blast hits to 86 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G30230.1p  transcript_id AT2G30230.1  protein_id AT2G30230.1p  transcript_id AT2G30230.1  
At2g30240	chr2:012902522	0.0	C/12902522-12902779,12901434-12902438,12900894-12901289,12899907-12900743	AT2G30240.1  CDS  gene_syn ATCHX13, CATION/H+ EXCHANGER 13, CHX13, T9D9.5, T9D9_5  gene ATCHX13  function Encodes a plasma membrane localized potassium transporter.  go_component plasma membrane|GO:0005886|18676662|IDA  go_process cation transport|GO:0006812|11500563|IC  go_process potassium ion transport|GO:0006813|18676662|IGI  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  go_function potassium ion transmembrane transporter activity|GO:0015079|18676662|IDA  go_function potassium ion transmembrane transporter activity|GO:0015079|18676662|IGI  go_function potassium ion transmembrane transporter activity|GO:0015079|18676662|IMP  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product ATCHX13; monovalent cation:proton antiporter/ potassium ion transmembrane transporter/ sodium:hydrogen antiporter  note ATCHX13; FUNCTIONS IN: monovalent cation:proton antiporter activity, sodium:hydrogen antiporter activity, potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport, cation transport; LOCATED IN: plasma membrane; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: CHX14 (CATION/HYDROGEN EXCHANGER 14); monovalent cation:proton antiporter/ sodium:hydrogen antiporter (TAIR:AT1G06970.1); Has 2791 Blast hits to 2777 proteins in 752 species: Archae - 167; Bacteria - 1956; Metazoa - 0; Fungi - 82; Plants - 241; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink).  protein_id AT2G30240.1p  transcript_id AT2G30240.1  protein_id AT2G30240.1p  transcript_id AT2G30240.1  
At2g30250	chr2:012904853	0.0	C/12904853-12905089,12904630-12904743,12904011-12904540,12903766-12903927,12903553-12903691	AT2G30250.1  CDS  gene_syn AtWRKY25, T9D9.6, T9D9_6, WRKY25  gene WRKY25  function member of WRKY Transcription Factor; Group I. Located in nucleus. Involved in response to various abiotic stresses - especially salt stress.  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleus|GO:0005634|18839316|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to osmotic stress|GO:0006970|18839316|IEP  go_process response to cold|GO:0009409|18839316|IEP  go_process response to salt stress|GO:0009651|18839316|IMP  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY25; transcription factor  note WRKY25; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to salt stress, response to cold, regulation of transcription, DNA-dependent, response to osmotic stress; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY33; transcription factor (TAIR:AT2G38470.1); Has 3323 Blast hits to 1734 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3290; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT2G30250.1p  transcript_id AT2G30250.1  protein_id AT2G30250.1p  transcript_id AT2G30250.1  
At2g30260	chr2:012907362	0.0	C/12907362-12907434,12906850-12907022,12906156-12906249,12905954-12906042,12905557-12905826	AT2G30260.1  CDS  gene_syn T9D9.7, T9D9_7, U2 small nuclear ribonucleoprotein B, U2B    gene U2B    function encodes U2B, which is a component of the U2 snRNP complex. Its precise role in pre-mRNA splicing is still unknown. It has been suggested that U2B0 may not be required for the splicing reaction itself but may have a role in U2 snRNP biogenesis. Deletion analysis of the U2B0 gene fusion has identified the N-terminal RNP-80 motif as sufficient for localization to the coiled body and the nucleus.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component nucleoplasm|GO:0005654|15133128|IDA  go_component cytoplasm|GO:0005737|15133128|IDA  go_component Cajal body|GO:0015030|15133128|IDA  go_process cis assembly of pre-catalytic spliceosome|GO:0000354|10397766|TAS  go_function RNA binding|GO:0003723||ISS  product U2B   (U2 small nuclear ribonucleoprotein B); RNA binding / nucleic acid binding / nucleotide binding  note U2 small nuclear ribonucleoprotein B (U2B  ); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: cis assembly of pre-catalytic spliceosome; LOCATED IN: nucleoplasm, Cajal body, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative (TAIR:AT1G06960.1); Has 1374 Blast hits to 1356 proteins in 184 species: Archae - 0; Bacteria - 2; Metazoa - 774; Fungi - 278; Plants - 150; Viruses - 1; Other Eukaryotes - 169 (source: NCBI BLink).  protein_id AT2G30260.1p  transcript_id AT2G30260.1  protein_id AT2G30260.1p  transcript_id AT2G30260.1  
At2g30270	chr2:012908836	0.0	C/12908836-12909057,12908445-12908645,12908027-12908152	AT2G30270.1  CDS  gene_syn T9D9.8, T9D9_8  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01750.2); Has 49 Blast hits to 49 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G30270.1p  transcript_id AT2G30270.1  protein_id AT2G30270.1p  transcript_id AT2G30270.1  
At2g30280	chr2:012911758	0.0	C/12911758-12911860,12911583-12911663,12911391-12911494,12911228-12911302,12911087-12911128,12910816-12910949,12910520-12910711,12910362-12910435,12909804-12910039	AT2G30280.1  CDS  gene_syn T9D9.9, T9D9_9  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 44325 Blast hits to 17174 proteins in 814 species: Archae - 92; Bacteria - 12397; Metazoa - 14270; Fungi - 4388; Plants - 1716; Viruses - 607; Other Eukaryotes - 10855 (source: NCBI BLink).  protein_id AT2G30280.1p  transcript_id AT2G30280.1  protein_id AT2G30280.1p  transcript_id AT2G30280.1  
At2g30290	chr2:012915481	0.0	C/12915481-12915781,12914947-12915358,12914590-12914870,12914435-12914523,12914276-12914345,12914122-12914205,12913959-12914035,12913798-12913879,12913629-12913711,12913459-12913525,12913255-12913383,12913077-12913183,12912890-12912985	AT2G30290.1  CDS  gene_syn T9D9.10, T9D9_10  go_function calcium ion binding|GO:0005509||IEA  go_component integral to plasma membrane|GO:0005887||ISS  go_component Golgi transport complex|GO:0017119|10888666|IPI  go_process protein targeting to vacuole|GO:0006623|10871276|ISS  go_process protein targeting to vacuole|GO:0006623|10871276|TAS  product vacuolar sorting receptor, putative  note vacuolar sorting receptor, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: protein targeting to vacuole; LOCATED IN: integral to plasma membrane, Golgi transport complex; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), EGF-type aspartate/asparagine hydroxylation conserved site (InterPro:IPR000152), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-like, type 3 (InterPro:IPR000742), Growth factor, receptor (InterPro:IPR009030), EGF-like region, conserved site (InterPro:IPR013032); BEST Arabidopsis thaliana protein match is: VSR1 (VACUOLAR SORTING RECEPTOR HOMOLOG 1); amino-terminal vacuolar sorting propeptide binding (TAIR:AT3G52850.1); Has 8236 Blast hits to 4061 proteins in 169 species: Archae - 2; Bacteria - 64; Metazoa - 7534; Fungi - 0; Plants - 232; Viruses - 0; Other Eukaryotes - 404 (source: NCBI BLink).  protein_id AT2G30290.1p  transcript_id AT2G30290.1  protein_id AT2G30290.1p  transcript_id AT2G30290.1  
At2g30300	chr2:012919401	0.0	W/12919401-12919690,12919745-12920527,12920793-12921222	AT2G30300.1  CDS  gene_syn T9D9.11, T9D9_11  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product nodulin-related  note nodulin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, sperm cell; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nodulin family protein (TAIR:AT2G16660.1); Has 651 Blast hits to 645 proteins in 154 species: Archae - 6; Bacteria - 168; Metazoa - 4; Fungi - 68; Plants - 314; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).  protein_id AT2G30300.1p  transcript_id AT2G30300.1  protein_id AT2G30300.1p  transcript_id AT2G30300.1  
At2g30310	chr2:012923055	0.0	W/12923055-12923681,12923825-12924083,12924178-12924371	AT2G30310.1  CDS  gene_syn T9D9.12, T9D9_12  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT2G30220.1); Has 1829 Blast hits to 1814 proteins in 161 species: Archae - 0; Bacteria - 217; Metazoa - 1; Fungi - 18; Plants - 1572; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT2G30310.1p  transcript_id AT2G30310.1  protein_id AT2G30310.1p  transcript_id AT2G30310.1  
At2g30320	chr2:012927665	0.0	C/12927665-12927896,12927542-12927577,12927275-12927387,12927027-12927175,12926769-12926913,12926283-12926678,12925728-12926189	AT2G30320.1  CDS  gene_syn T9D9.13, T9D9_13  go_process pseudouridine synthesis|GO:0001522||IEA  go_process tRNA processing|GO:0008033||IEA  go_function pseudouridine synthase activity|GO:0009982|18599582|TAS  go_function pseudouridine synthase activity|GO:0009982||ISS  product tRNA pseudouridine synthase family protein  note tRNA pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: tRNA processing, pseudouridine synthesis; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: tRNA pseudouridine synthase (InterPro:IPR001406); BEST Arabidopsis thaliana protein match is: tRNA pseudouridine synthase family protein (TAIR:AT1G76120.1); Has 1444 Blast hits to 1288 proteins in 375 species: Archae - 53; Bacteria - 400; Metazoa - 328; Fungi - 174; Plants - 79; Viruses - 0; Other Eukaryotes - 410 (source: NCBI BLink).  protein_id AT2G30320.1p  transcript_id AT2G30320.1  protein_id AT2G30320.1p  transcript_id AT2G30320.1  
At2g30330	chr2:012929532	0.0	C/12929532-12929688,12929235-12929440,12929045-12929140	AT2G30330.1  CDS  gene_syn T9D9.14, T9D9_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product GCN5L1 family protein  note GCN5L1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-like 1 (InterPro:IPR009395); Has 143 Blast hits to 143 proteins in 64 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 4; Plants - 26; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT2G30330.1p  transcript_id AT2G30330.1  protein_id AT2G30330.1p  transcript_id AT2G30330.1  
At2g30340	chr2:012932527	0.0	C/12932527-12932540,12932157-12932436,12931306-12931818	AT2G30340.1  CDS  gene_syn LBD13, LOB DOMAIN-CONTAINING PROTEIN 13, T9D9.15, T9D9_15  gene LBD13  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product LBD13 (LOB DOMAIN-CONTAINING PROTEIN 13)  note LOB DOMAIN-CONTAINING PROTEIN 13 (LBD13); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: root, leaf; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD15 (LOB DOMAIN-CONTAINING PROTEIN 15) (TAIR:AT2G40470.1); Has 7004 Blast hits to 4288 proteins in 355 species: Archae - 10; Bacteria - 392; Metazoa - 2041; Fungi - 772; Plants - 2281; Viruses - 577; Other Eukaryotes - 931 (source: NCBI BLink).  protein_id AT2G30340.1p  transcript_id AT2G30340.1  protein_id AT2G30340.1p  transcript_id AT2G30340.1  
At2g30350	chr2:012935015	0.0	C/12935015-12935325,12934237-12934930	AT2G30350.1  CDS  gene_syn T9D9.16, T9D9_16  go_component intracellular|GO:0005622||ISS  go_process DNA repair|GO:0006281||ISS  go_function nuclease activity|GO:0004518||ISS  product endo/excinuclease amino terminal domain-containing protein  note endo/excinuclease amino terminal domain-containing protein; FUNCTIONS IN: nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 275 Blast hits to 269 proteins in 69 species: Archae - 0; Bacteria - 8; Metazoa - 121; Fungi - 47; Plants - 29; Viruses - 8; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT2G30350.1p  transcript_id AT2G30350.1  protein_id AT2G30350.1p  transcript_id AT2G30350.1  
At2g30350	chr2:012935603	0.0	C/12935603-12935742,12935271-12935409,12935015-12935148,12934237-12934930	AT2G30350.2  CDS  gene_syn T9D9.16, T9D9_16  go_component intracellular|GO:0005622||IEA  go_process DNA repair|GO:0006281||IEA  go_function nuclease activity|GO:0004518||IEA  go_component intracellular|GO:0005622||ISS  go_process DNA repair|GO:0006281||ISS  go_function nuclease activity|GO:0004518||ISS  product endo/excinuclease amino terminal domain-containing protein  note endo/excinuclease amino terminal domain-containing protein; FUNCTIONS IN: nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Excinuclease ABC, C subunit, N-terminal (InterPro:IPR000305); Has 527 Blast hits to 521 proteins in 136 species: Archae - 0; Bacteria - 10; Metazoa - 183; Fungi - 117; Plants - 41; Viruses - 11; Other Eukaryotes - 165 (source: NCBI BLink).  protein_id AT2G30350.2p  transcript_id AT2G30350.2  protein_id AT2G30350.2p  transcript_id AT2G30350.2  
At2g30360	chr2:012937265	0.0	C/12937265-12938572	AT2G30360.1  CDS  gene_syn CBL-INTERACTING PROTEIN KINASE 11, CIPK11, PKS5, PROTEIN KINASE SOS2-LIKE 5, SIP4, SNF1-RELATED PROTEIN KINASE 3.22, SNRK3.22, SOS3-INTERACTING PROTEIN 4, T9D9.17, T9D9_17  gene SIP4  function Encodes a SOS2-like protein kinase that is a member of the CBL-interacting protein kinase family.Loss of function mutants show a decrease in sensitivity to high pH.Phosphorylates AHA2, a plasma membrane H+ ATPase.This phosphorylation appears to regulate the activity of the proton transporter.  go_process protein amino acid phosphorylation|GO:0006468|17483306|IDA  go_process response to pH|GO:0009268|17483306|IMP  go_function protein kinase activity|GO:0004672|17483306|IDA  go_function kinase activity|GO:0016301||ISS  product SIP4 (SOS3-INTERACTING PROTEIN 4); kinase/ protein kinase  note SOS3-INTERACTING PROTEIN 4 (SIP4); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation, response to pH; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G01820.1); Has 96338 Blast hits to 94671 proteins in 3206 species: Archae - 72; Bacteria - 8657; Metazoa - 41381; Fungi - 8824; Plants - 18320; Viruses - 493; Other Eukaryotes - 18591 (source: NCBI BLink).  protein_id AT2G30360.1p  transcript_id AT2G30360.1  protein_id AT2G30360.1p  transcript_id AT2G30360.1  
At2g30362	chr2:012937351	0.0	W/12937351-12939638	AT2G30362.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G30360  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G30362.1  
At2g30368	chr2:012940353	0.0	C/12940353-12940523	AT2G30368.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G30368.1p  transcript_id AT2G30368.1  protein_id AT2G30368.1p  transcript_id AT2G30368.1  
At2g30370	chr2:012941990	0.0	C/12941990-12942167,12941762-12941854,12941276-12941451,12940577-12940822	AT2G30370.1  CDS  gene_syn T9D9.18, T9D9_18  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product allergen-related  note allergen-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14723.1); Has 143 Blast hits to 142 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G30370.1p  transcript_id AT2G30370.1  protein_id AT2G30370.1p  transcript_id AT2G30370.1  
At2g30380	chr2:012948284	0.0	W/12948284-12949253,12949984-12950573	AT2G30380.1  CDS  gene_syn T9D9.19, T9D9_19  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: F-box associated type 1 (InterPro:IPR017451), Protein of unknown function DUF641, plant (InterPro:IPR006943); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45260.1); Has 272 Blast hits to 271 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 264; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G30380.1p  transcript_id AT2G30380.1  protein_id AT2G30380.1p  transcript_id AT2G30380.1  
At2g30390	chr2:012953909	0.0	C/12953909-12953985,12953518-12953824,12953269-12953412,12952819-12952920,12952493-12952596,12952287-12952413,12952012-12952164,12951837-12951937,12951556-12951757,12951242-12951463	AT2G30390.1  CDS  gene_syn ATFC-II, FC-II, FC2, FERROCHELATASE 2, T9D9.1  gene FC2  function Encodes one of two ferrochelatase genes in Arabidopsis. Ferrochelatase is the terminal enzyme of heme biosynthesis. FC-II is speculated to operate in photosynthetic cytochromes  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process heme biosynthetic process|GO:0006783||IEA  go_component chloroplast|GO:0009507|11602264|IDA  go_component chloroplast|GO:0009507|9753778|IDA  go_process heme biosynthetic process|GO:0006783||ISS  go_function ferrochelatase activity|GO:0004325|9753778|IGI  go_function ferrochelatase activity|GO:0004325||ISS  product FC2 (FERROCHELATASE 2); ferrochelatase  note FERROCHELATASE 2 (FC2); FUNCTIONS IN: ferrochelatase activity; INVOLVED IN: heme biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferrochelatase (InterPro:IPR001015); BEST Arabidopsis thaliana protein match is: FC1 (ferrochelatase 1); ferrochelatase (TAIR:AT5G26030.2); Has 5548 Blast hits to 5548 proteins in 1208 species: Archae - 8; Bacteria - 2393; Metazoa - 146; Fungi - 92; Plants - 72; Viruses - 0; Other Eukaryotes - 2837 (source: NCBI BLink).  protein_id AT2G30390.1p  transcript_id AT2G30390.1  protein_id AT2G30390.1p  transcript_id AT2G30390.1  
At2g30395	chr2:012954837	0.0	C/12954837-12955083,12954409-12954749	AT2G30395.1  CDS  gene_syn ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 17, ATOFP17, OFP17  gene OFP17  function Member of the plant specific ovate protein family of unknown function.  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product OFP17 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 17)  note ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 17 (OFP17); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06923.1); Has 19 Blast hits to 19 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G30395.1p  transcript_id AT2G30395.1  protein_id AT2G30395.1p  transcript_id AT2G30395.1  
At2g30400	chr2:012956592	0.0	W/12956592-12957554	AT2G30400.1  CDS  gene_syn ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 2, ATOFP2, OFP2, OVATE FAMILY PROTEIN 2, T9D9.21, T9D9_21  gene OFP2  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  product OFP2 (OVATE FAMILY PROTEIN 2)  note OVATE FAMILY PROTEIN 2 (OFP2); INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623, plant (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: OFP4 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4) (TAIR:AT1G06920.1); Has 271 Blast hits to 264 proteins in 37 species: Archae - 0; Bacteria - 2; Metazoa - 25; Fungi - 6; Plants - 204; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT2G30400.1p  transcript_id AT2G30400.1  protein_id AT2G30400.1p  transcript_id AT2G30400.1  
At2g30410	chr2:012959812	0.0	W/12959812-12959964,12960096-12960182,12960451-12960552	AT2G30410.1  CDS  gene_syn KIESEL, KIS, T9D9.22, T9D9_22, TFCA, TUBULIN FOLDING FACTOR A  gene KIS  function mutant has embryo defect; enlarged embryo cells and endosperm nuclei; Tubulin Folding Cofactor A  go_component microtubule|GO:0005874||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_process cytokinesis|GO:0000910|11959844|IGI  go_process tubulin complex assembly|GO:0007021|11959844|ISS  go_process tubulin complex assembly|GO:0007021|12215519|IGI  product KIS (KIESEL); unfolded protein binding  note KIESEL (KIS); FUNCTIONS IN: unfolded protein binding; INVOLVED IN: tubulin complex assembly, cytokinesis; LOCATED IN: microtubule; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tubulin binding cofactor A (InterPro:IPR004226); Has 249 Blast hits to 249 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 116; Fungi - 64; Plants - 35; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT2G30410.1p  transcript_id AT2G30410.1  protein_id AT2G30410.1p  transcript_id AT2G30410.1  
At2g30420	chr2:012961831	0.0	C/12961831-12961915,12961640-12961727,12960937-12961102	AT2G30420.1  CDS  gene_syn ETC2, T9D9.23, T9D9_23  gene ETC2  function In a tandem repeat with AT2G30424 and AT2G30432  go_component mitochondrion|GO:0005739||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ETC2; DNA binding / transcription factor  note ETC2; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: TCL2 (TRICHOMELESS 2); DNA binding (TAIR:AT2G30424.1); Has 1228 Blast hits to 1228 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1212; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT2G30420.1p  transcript_id AT2G30420.1  protein_id AT2G30420.1p  transcript_id AT2G30420.1  
At2g30424	chr2:012965396	0.0	C/12965396-12965468,12965198-12965285,12964506-12964647	AT2G30424.1  CDS  gene_syn TCL2, TRICHOMELESS 2  gene TCL2  function In a tandem repeat with AT2g30432 (TCL1) and AT2g30420 (ETC2)  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  product TCL2 (TRICHOMELESS 2); DNA binding  note TRICHOMELESS 2 (TCL2); FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: TCL1 (TRICHOMELESS1); DNA binding (TAIR:AT2G30432.1); Has 1017 Blast hits to 1017 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1009; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT2G30424.1p  transcript_id AT2G30424.1  protein_id AT2G30424.1p  transcript_id AT2G30424.1  
At2g30430	chr2:012968176	0.0	W/12968176-12968412	AT2G30430.1  CDS  gene_syn T6B20.26, T6B20_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G30430.1p  transcript_id AT2G30430.1  protein_id AT2G30430.1p  transcript_id AT2G30430.1  
At2g30432	chr2:012969991	0.0	C/12969991-12970060,12969766-12969853,12968763-12968859	AT2G30432.1  CDS  gene_syn TCL1, TRICHOMELESS1  gene TCL1  function Encodes TRICHOMELESS1 (TCL1), a single-repeat MYB-type transcription factor that negatively regulates trichome formation by suppressing GL1 (GLABRA1). In a tandem repeat with AT2g30424 and AT2g30420.  go_function DNA binding|GO:0003677||IEA  go_process trichome morphogenesis|GO:0010090|17933793|IMP  product TCL1 (TRICHOMELESS1); DNA binding  note TRICHOMELESS1 (TCL1); FUNCTIONS IN: DNA binding; INVOLVED IN: trichome morphogenesis; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: TCL2 (TRICHOMELESS 2); DNA binding (TAIR:AT2G30424.1); Has 809 Blast hits to 809 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 797; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT2G30432.1p  transcript_id AT2G30432.1  protein_id AT2G30432.1p  transcript_id AT2G30432.1  
At2g30440	chr2:012973244	0.0	W/12973244-12973840,12974121-12974189,12974278-12974355,12974549-12974635,12974719-12974786,12974904-12975027	AT2G30440.1  CDS  gene_syn T6B20.20, T6B20_20  go_component membrane|GO:0016020||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type peptidase activity|GO:0008236||IEA  go_component membrane|GO:0016020||ISS  go_process proteolysis|GO:0006508||ISS  go_function peptidase activity|GO:0008233||ISS  product chloroplast thylakoidal processing peptidase  note chloroplast thylakoidal processing peptidase; FUNCTIONS IN: serine-type peptidase activity, peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Peptidase S24, S26A and S26B, C-terminal (InterPro:IPR011056), Peptidase S24, S26A, S26B and S26C (InterPro:IPR015927), Peptidase S26A, signal peptidase I (InterPro:IPR000223), Peptidase S26A (InterPro:IPR014037); BEST Arabidopsis thaliana protein match is: signal peptidase, putative (TAIR:AT1G06870.1); Has 5856 Blast hits to 5751 proteins in 1301 species: Archae - 0; Bacteria - 3613; Metazoa - 183; Fungi - 69; Plants - 112; Viruses - 0; Other Eukaryotes - 1879 (source: NCBI BLink).  protein_id AT2G30440.1p  transcript_id AT2G30440.1  protein_id AT2G30440.1p  transcript_id AT2G30440.1  
At2g30450	chr2:012975948	0.0	C/12975948-12976018	AT2G30450.1  tRNA  gene_syn 1509.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: GCC)  transcript_id AT2G30450.1  
At2g30460	chr2:012978369	0.0	C/12978369-12978489,12977936-12978120,12977765-12977832,12977311-12977443,12977033-12977194,12976681-12976953,12976449-12976568	AT2G30460.1  CDS  gene_syn T6B20.18, T6B20_18  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: transporter-related (TAIR:AT1G06890.2); Has 782 Blast hits to 581 proteins in 90 species: Archae - 0; Bacteria - 6; Metazoa - 140; Fungi - 34; Plants - 501; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT2G30460.1p  transcript_id AT2G30460.1  protein_id AT2G30460.1p  transcript_id AT2G30460.1  
At2g30460	chr2:012978369	0.0	C/12978369-12978489,12977936-12978120,12977765-12977832,12977311-12977443,12977033-12977194,12976681-12976953,12976449-12976568	AT2G30460.2  CDS  gene_syn T6B20.18, T6B20_18  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: transporter-related (TAIR:AT1G06890.2).  protein_id AT2G30460.2p  transcript_id AT2G30460.2  protein_id AT2G30460.2p  transcript_id AT2G30460.2  
At2g30470	chr2:012984597	0.0	C/12984597-12984724,12984256-12984337,12984057-12984158,12983425-12983969,12983239-12983335,12982978-12983152,12982780-12982856,12982326-12982685,12982182-12982231,12981951-12982064,12981766-12981830,12980904-12981481	AT2G30470.1  CDS  gene_syn HIGH-LEVEL EXPRESSION OF SUGAR-INDUCIBLE GENE 2, HSI2, T6B20.17, T6B20_17, VAL1, VP1/ABI3-LIKE 1  gene HSI2  function HSI2 is a member of a novel family of B3 domain proteins with a sequence similar to the ERF-associated amphiphilic repression (EAR) motif. It functions as an active repressor of the Spo minimal promoter (derived from a gene for sweet potato sporamin A1) through the EAR motif. It contains a plant-specific B3 DNA-binding domain. The Arabidopsis genome contains 42 genes with B3 domains which could be classified into three families that are represented by ABI3, ARF1 and RAV1. HSI2 belongs to the ABI3 family. It is expressed at similar levels in all organs. Treatment with 6% sucrose showed a slight increase in transcript levels after 24 h. No changes were observed after treatment with 50 M ABA. It is localized in the nucleus via a nuclear localization sequence located in the fourth conserved region of the C-terminal B3 domain.  go_component nucleus|GO:0005634|15894743|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process response to abscisic acid stimulus|GO:0009737|15894743|TAS  go_process response to sucrose stimulus|GO:0009744|15894743|TAS  go_process positive regulation of seed germination|GO:0010030|17267611|IGI  go_process seed maturation|GO:0010431|17267611|IGI  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription repressor activity|GO:0016564|15894743|IDA  product HSI2 (HIGH-LEVEL EXPRESSION OF SUGAR-INDUCIBLE GENE 2); transcription factor/ transcription repressor  note HIGH-LEVEL EXPRESSION OF SUGAR-INDUCIBLE GENE 2 (HSI2); FUNCTIONS IN: transcription repressor activity, transcription factor activity; INVOLVED IN: seed maturation, positive regulation of seed germination, response to abscisic acid stimulus, response to sucrose stimulus; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: HSL1 (HSI2-LIKE 1); transcription factor (TAIR:AT4G32010.1); Has 682 Blast hits to 674 proteins in 61 species: Archae - 0; Bacteria - 2; Metazoa - 27; Fungi - 0; Plants - 627; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT2G30470.1p  transcript_id AT2G30470.1  protein_id AT2G30470.1p  transcript_id AT2G30470.1  
At2g30480	chr2:012990844	0.0	C/12990844-12991042,12990427-12990580,12990308-12990345,12989904-12989970,12989727-12989819,12989607-12989632,12989207-12989503,12988674-12989016,12988524-12988582,12988326-12988441	AT2G30480.4  CDS  gene_syn T6B20.25, T6B20_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 85 Blast hits to 85 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 55; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT2G30480.4p  transcript_id AT2G30480.4  protein_id AT2G30480.4p  transcript_id AT2G30480.4  
At2g30480	chr2:012992225	0.0	C/12992225-12992279,12992114-12992156,12991853-12991974,12991576-12991671,12991394-12991448,12991141-12991237,12990844-12991048,12990427-12990580,12990308-12990345,12989904-12989970,12989727-12989819,12989607-12989632,12989207-12989503,12988670-12989016,12988568-12988573	AT2G30480.2  CDS  gene_syn T6B20.25, T6B20_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 41 Blast hits to 41 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 18; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G30480.2p  transcript_id AT2G30480.2  protein_id AT2G30480.2p  transcript_id AT2G30480.2  
At2g30480	chr2:012992225	0.0	C/12992225-12992279,12992114-12992156,12991853-12991974,12991576-12991671,12991394-12991448,12991141-12991237,12990844-12991048,12990427-12990580,12990308-12990345,12989904-12989970,12989727-12989819,12989607-12989632,12989207-12989503,12988674-12989016,12988524-12988582,12988326-12988441	AT2G30480.1  CDS  gene_syn T6B20.25, T6B20_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 122 Blast hits to 119 proteins in 34 species: Archae - 0; Bacteria - 2; Metazoa - 82; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT2G30480.1p  transcript_id AT2G30480.1  protein_id AT2G30480.1p  transcript_id AT2G30480.1  
At2g30480	chr2:012992889	0.0	C/12992889-12992930,12992705-12992727,12992423-12992607,12992225-12992281,12992114-12992156,12991853-12991974,12991576-12991671,12991394-12991448,12991141-12991237,12990844-12991048,12990427-12990580,12990308-12990345,12989904-12989970,12989727-12989819,12989607-12989632,12989207-12989503,12988674-12989016,12988524-12988582,12988326-12988441	AT2G30480.3  CDS  gene_syn T6B20.25, T6B20_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 133 Blast hits to 130 proteins in 35 species: Archae - 0; Bacteria - 4; Metazoa - 82; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT2G30480.3p  transcript_id AT2G30480.3  protein_id AT2G30480.3p  transcript_id AT2G30480.3  
At2g30490	chr2:012994899	0.0	C/12994899-12995683,12994680-12994813,12993861-12994459	AT2G30490.1  CDS  gene_syn ATC4H, C4H, CINNAMATE 4-HYDROXYLASE, CINNAMATE-4-HYDROXYLASE, CYP73A5, T6B20.16, T6B20_16  gene C4H  function Encodes a cinnamate-4-hydroxylase.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum|GO:0005783|9085571|TAS  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process response to light stimulus|GO:0009416|9085570|IEP  go_process response to light stimulus|GO:0009416|9085571|IEP  go_process response to wounding|GO:0009611|9085570|IMP  go_process phenylpropanoid biosynthetic process|GO:0009699|9085570|TAS  go_process phenylpropanoid biosynthetic process|GO:0009699|9085571|TAS  go_function trans-cinnamate 4-monooxygenase activity|GO:0016710|9085571|IDA  product C4H (CINNAMATE-4-HYDROXYLASE); trans-cinnamate 4-monooxygenase  note CINNAMATE-4-HYDROXYLASE (C4H); FUNCTIONS IN: trans-cinnamate 4-monooxygenase activity; INVOLVED IN: phenylpropanoid biosynthetic process, response to light stimulus, response to wounding; LOCATED IN: endoplasmic reticulum, plasma membrane, membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3); monooxygenase/ p-coumarate 3-hydroxylase (TAIR:AT2G40890.1); Has 22348 Blast hits to 22163 proteins in 1191 species: Archae - 21; Bacteria - 1617; Metazoa - 10360; Fungi - 4071; Plants - 5563; Viruses - 3; Other Eukaryotes - 713 (source: NCBI BLink).  protein_id AT2G30490.1p  transcript_id AT2G30490.1  protein_id AT2G30490.1p  transcript_id AT2G30490.1  
At2g30500	chr2:013000058	0.0	C/13000058-13000072,12999847-12999958,12998329-12999755	AT2G30500.1  CDS  gene_syn T6B20.15, T6B20_15  product kinase interacting family protein  note kinase interacting family protein; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: KIP1-like (InterPro:IPR011684); BEST Arabidopsis thaliana protein match is: kinase interacting protein-related (TAIR:AT5G58320.2); Has 99052 Blast hits to 50592 proteins in 1957 species: Archae - 1222; Bacteria - 11612; Metazoa - 49960; Fungi - 7421; Plants - 3699; Viruses - 349; Other Eukaryotes - 24789 (source: NCBI BLink).  protein_id AT2G30500.1p  transcript_id AT2G30500.1  protein_id AT2G30500.1p  transcript_id AT2G30500.1  
At2g30505	chr2:013001121	0.0	C/13001121-13002086	AT2G30505.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Expressed protein  note Expressed protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46300.1); Has 248 Blast hits to 243 proteins in 67 species: Archae - 0; Bacteria - 14; Metazoa - 80; Fungi - 25; Plants - 81; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT2G30505.1p  transcript_id AT2G30505.1  protein_id AT2G30505.1p  transcript_id AT2G30505.1  
At2g30520	chr2:013004779	0.0	C/13004779-13005153,13002920-13004182	AT2G30520.2  CDS  gene_syn AT2G30510, ROOT PHOTOTROPISM 2, RPT2, T6B20.13, T6B20_13  gene RPT2  function light inducible root phototropism 2 encoding a signal transducer of the phototropic response in Arabidopsis  go_component nucleus|GO:0005634|10662859|ISS  go_process phototropism|GO:0009638|10662859|IMP  go_function protein binding|GO:0005515|10662859|ISS  go_function protein binding|GO:0005515||ISS  product RPT2 (ROOT PHOTOTROPISM 2); protein binding  note ROOT PHOTOTROPISM 2 (RPT2); FUNCTIONS IN: protein binding; INVOLVED IN: phototropism; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: protein binding / signal transducer (TAIR:AT5G67385.1); Has 422 Blast hits to 405 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 422; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G30520.2p  transcript_id AT2G30520.2  protein_id AT2G30520.2p  transcript_id AT2G30520.2  
At2g30520	chr2:013004779	0.0	C/13004779-13005153,13002920-13004182	AT2G30520.3  CDS  gene_syn AT2G30510, ROOT PHOTOTROPISM 2, RPT2, T6B20.13, T6B20_13  gene RPT2  function light inducible root phototropism 2 encoding a signal transducer of the phototropic response in Arabidopsis  go_component nucleus|GO:0005634|10662859|ISS  go_process phototropism|GO:0009638|10662859|IMP  go_function protein binding|GO:0005515|10662859|ISS  go_function protein binding|GO:0005515||ISS  product RPT2 (ROOT PHOTOTROPISM 2); protein binding  note ROOT PHOTOTROPISM 2 (RPT2); FUNCTIONS IN: protein binding; INVOLVED IN: phototropism; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: protein binding / signal transducer (TAIR:AT5G67385.1); Has 422 Blast hits to 405 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 422; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G30520.3p  transcript_id AT2G30520.3  protein_id AT2G30520.3p  transcript_id AT2G30520.3  
At2g30520	chr2:013005503	0.0	C/13005503-13005573,13005350-13005419,13004779-13005156,13002920-13004182	AT2G30520.1  CDS  gene_syn AT2G30510, ROOT PHOTOTROPISM 2, RPT2, T6B20.13, T6B20_13  gene RPT2  function light inducible root phototropism 2 encoding a signal transducer of the phototropic response in Arabidopsis  go_component nucleus|GO:0005634|10662859|ISS  go_process phototropism|GO:0009638|10662859|IMP  go_function protein binding|GO:0005515|10662859|ISS  go_function protein binding|GO:0005515||ISS  product RPT2 (ROOT PHOTOTROPISM 2); protein binding  note ROOT PHOTOTROPISM 2 (RPT2); FUNCTIONS IN: protein binding; INVOLVED IN: phototropism; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: protein binding / signal transducer (TAIR:AT5G67385.1); Has 559 Blast hits to 540 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 129; Fungi - 0; Plants - 425; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT2G30520.1p  transcript_id AT2G30520.1  protein_id AT2G30520.1p  transcript_id AT2G30520.1  
At2g30530	chr2:013009071	0.0	W/13009071-13009331,13009478-13009660,13009754-13009864,13010073-13010219,13010367-13010531,13010619-13010867	AT2G30530.1  CDS  gene_syn T6B20.12, T6B20_12  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01970.1); Has 5828 Blast hits to 755 proteins in 128 species: Archae - 0; Bacteria - 29; Metazoa - 881; Fungi - 129; Plants - 81; Viruses - 12; Other Eukaryotes - 4696 (source: NCBI BLink).  protein_id AT2G30530.1p  transcript_id AT2G30530.1  protein_id AT2G30530.1p  transcript_id AT2G30530.1  
At2g30540	chr2:013011259	0.0	C/13011259-13011567	AT2G30540.1  CDS  gene_syn T6B20.11, T6B20_11  go_component endomembrane system|GO:0012505||IEA  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  product glutaredoxin family protein  note glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin family protein (TAIR:AT1G06830.1); Has 705 Blast hits to 703 proteins in 124 species: Archae - 0; Bacteria - 27; Metazoa - 191; Fungi - 59; Plants - 416; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT2G30540.1p  transcript_id AT2G30540.1  protein_id AT2G30540.1p  transcript_id AT2G30540.1  
At2g30550	chr2:013014884	0.0	W/13014884-13016226,13016759-13017005	AT2G30550.2  CDS  gene_syn T6B20.10, T6B20_10  go_component chloroplast|GO:0009507||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product lipase class 3 family protein  note lipase class 3 family protein; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: lipase class 3 family protein (TAIR:AT1G06800.1); Has 975 Blast hits to 969 proteins in 182 species: Archae - 0; Bacteria - 139; Metazoa - 58; Fungi - 222; Plants - 339; Viruses - 3; Other Eukaryotes - 214 (source: NCBI BLink).  protein_id AT2G30550.2p  transcript_id AT2G30550.2  protein_id AT2G30550.2p  transcript_id AT2G30550.2  
At2g30550	chr2:013014884	0.0	W/13014884-13016278	AT2G30550.1  CDS  gene_syn T6B20.10, T6B20_10  go_component chloroplast|GO:0009507||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product lipase class 3 family protein  note lipase class 3 family protein; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: lipase class 3 family protein (TAIR:AT1G06800.1); Has 973 Blast hits to 967 proteins in 182 species: Archae - 0; Bacteria - 139; Metazoa - 58; Fungi - 223; Plants - 336; Viruses - 3; Other Eukaryotes - 214 (source: NCBI BLink).  protein_id AT2G30550.1p  transcript_id AT2G30550.1  protein_id AT2G30550.1p  transcript_id AT2G30550.1  
At2g30560	chr2:013017347	0.0	W/13017347-13017569,13018565-13018857	AT2G30560.1  CDS  gene_syn T6B20.9, T6B20_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product glycine-rich protein  note glycine-rich protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot, carpel, cultured cell; EXPRESSED DURING: 4 anthesis; Has 172845 Blast hits to 43096 proteins in 1888 species: Archae - 405; Bacteria - 41911; Metazoa - 65352; Fungi - 12194; Plants - 17346; Viruses - 2439; Other Eukaryotes - 33198 (source: NCBI BLink).  protein_id AT2G30560.1p  transcript_id AT2G30560.1  protein_id AT2G30560.1p  transcript_id AT2G30560.1  
At2g30570	chr2:013019960	0.0	C/13019960-13020053,13019326-13019633	AT2G30570.1  CDS  gene_syn PHOTOSYSTEM II REACTION CENTER W, PSBW, PSII-W  gene PSBW  function Encodes a protein similar to photosystem II reaction center subunit W.  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product PSBW (PHOTOSYSTEM II REACTION CENTER W)  note PHOTOSYSTEM II REACTION CENTER W (PSBW); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II protein PsbW, class 2 (InterPro:IPR009806); Has 54 Blast hits to 54 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G30570.1p  transcript_id AT2G30570.1  protein_id AT2G30570.1p  transcript_id AT2G30570.1  
At2g30575	chr2:013023795	0.0	C/13023795-13023906,13023525-13023559,13023318-13023362,13023094-13023241,13022942-13023009,13022444-13022715,13021952-13022306,13020992-13021513,13020564-13020839	AT2G30575.1  CDS  gene_syn GALACTURONOSYLTRANSFERASE 5, GAUT5, LGT5, LOS GLYCOSYLTRANSFERASE 5  gene LGT5  function Encodes a protein with putative galacturonosyltransferase activity.  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS  product LGT5 (LOS GLYCOSYLTRANSFERASE 5); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups  note LOS GLYCOSYLTRANSFERASE 5 (LGT5); FUNCTIONS IN: polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: GAUT6 (Galacturonosyltransferase 6); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT1G06780.1); Has 789 Blast hits to 789 proteins in 135 species: Archae - 0; Bacteria - 127; Metazoa - 141; Fungi - 14; Plants - 433; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT2G30575.1p  transcript_id AT2G30575.1  protein_id AT2G30575.1p  transcript_id AT2G30575.1  
At2g30580	chr2:013026444	0.0	W/13026444-13026561,13027981-13028080,13028505-13028832,13028978-13029390,13029496-13029546,13029839-13029911,13030184-13030363	AT2G30580.1  CDS  gene_syn DREB2A-INTERACTING PROTEIN 2, DRIP2, T6B20.7, T6B20_7  gene DRIP2  function Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. DRIP2 seems to be involved in regulating stress-related transcriptional changes and drought tolerance.  go_process response to water deprivation|GO:0009414|18552202|IGI  go_function ubiquitin-protein ligase activity|GO:0004842|18552202|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product DRIP2 (DREB2A-INTERACTING PROTEIN 2); protein binding / ubiquitin-protein ligase/ zinc ion binding  note DREB2A-INTERACTING PROTEIN 2 (DRIP2); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: response to water deprivation; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: DRIP1 (DREB2A-INTERACTING PROTEIN 1); protein binding / ubiquitin-protein ligase/ zinc ion binding (TAIR:AT1G06770.1); Has 1339 Blast hits to 1336 proteins in 130 species: Archae - 0; Bacteria - 2; Metazoa - 1115; Fungi - 43; Plants - 99; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT2G30580.1p  transcript_id AT2G30580.1  protein_id AT2G30580.1p  transcript_id AT2G30580.1  
At2g30590	chr2:013033891	0.0	W/13033891-13034762,13034843-13034968,13035159-13035303	AT2G30590.1  CDS  gene_syn T6B20.6, T6B20_6, WRKY21  gene WRKY21  function Encodes WRKY DNA-binding protein 21 (WRKY21).  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634|10785665|IC  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function calmodulin binding|GO:0005516|15733871|IDA  product WRKY21; calmodulin binding / transcription factor  note WRKY21; FUNCTIONS IN: transcription factor activity, calmodulin binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY, Zn-cluster (InterPro:IPR018872); BEST Arabidopsis thaliana protein match is: WRKY74; calmodulin binding / transcription factor (TAIR:AT5G28650.1); Has 38525 Blast hits to 13471 proteins in 536 species: Archae - 6; Bacteria - 871; Metazoa - 14823; Fungi - 3961; Plants - 3037; Viruses - 522; Other Eukaryotes - 15305 (source: NCBI BLink).  protein_id AT2G30590.1p  transcript_id AT2G30590.1  protein_id AT2G30590.1p  transcript_id AT2G30590.1  
At2g30600	chr2:013037410	0.0	W/13037410-13038219,13038367-13038696,13038783-13039013,13039382-13039543,13039763-13039975,13040072-13040119,13040220-13040278,13040371-13040503,13040620-13040694,13040841-13040921,13041095-13041163,13041257-13041475	AT2G30600.1  CDS  gene_syn AT2G30610, T6B20.5, T6B20_5  go_process cell adhesion|GO:0007155||IEA  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_function protein binding|GO:0005515||ISS  product BTB/POZ domain-containing protein  note BTB/POZ domain-containing protein; FUNCTIONS IN: protein binding; INVOLVED IN: cell adhesion; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ fold (InterPro:IPR011333), Coagulation factor 5/8 type, C-terminal (InterPro:IPR000421), BTB/POZ (InterPro:IPR013069), BTB/Kelch-associated (InterPro:IPR011705), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT2G46260.1); Has 5681 Blast hits to 5383 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 4936; Fungi - 16; Plants - 503; Viruses - 34; Other Eukaryotes - 192 (source: NCBI BLink).  protein_id AT2G30600.1p  transcript_id AT2G30600.1  protein_id AT2G30600.1p  transcript_id AT2G30600.1  
At2g30600	chr2:013037410	0.0	W/13037410-13038219,13038367-13038696,13038783-13039013,13039382-13039543,13039763-13039975,13040072-13040119,13040220-13040278,13040371-13040503,13040620-13040694,13040841-13040921,13041095-13041163,13041257-13041475	AT2G30600.2  CDS  gene_syn AT2G30610, T6B20.5, T6B20_5  go_process cell adhesion|GO:0007155||IEA  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_function protein binding|GO:0005515||ISS  product BTB/POZ domain-containing protein  note BTB/POZ domain-containing protein; FUNCTIONS IN: protein binding; INVOLVED IN: cell adhesion; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ fold (InterPro:IPR011333), Coagulation factor 5/8 type, C-terminal (InterPro:IPR000421), BTB/POZ (InterPro:IPR013069), BTB/Kelch-associated (InterPro:IPR011705), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT2G46260.1); Has 5681 Blast hits to 5383 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 4936; Fungi - 16; Plants - 503; Viruses - 34; Other Eukaryotes - 192 (source: NCBI BLink).  protein_id AT2G30600.2p  transcript_id AT2G30600.2  protein_id AT2G30600.2p  transcript_id AT2G30600.2  
At2g30600	chr2:013037410	0.0	W/13037410-13038219,13038367-13038696,13038783-13039013,13039382-13039543,13039763-13039975,13040072-13040119,13040220-13040278,13040371-13040503,13040620-13040694,13040841-13040921,13041095-13041163,13041257-13041475	AT2G30600.3  CDS  gene_syn AT2G30610, T6B20.5, T6B20_5  go_process cell adhesion|GO:0007155||IEA  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_function protein binding|GO:0005515||ISS  product BTB/POZ domain-containing protein  note BTB/POZ domain-containing protein; FUNCTIONS IN: protein binding; INVOLVED IN: cell adhesion; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ fold (InterPro:IPR011333), Coagulation factor 5/8 type, C-terminal (InterPro:IPR000421), BTB/POZ (InterPro:IPR013069), BTB/Kelch-associated (InterPro:IPR011705), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT2G46260.1); Has 5681 Blast hits to 5383 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 4936; Fungi - 16; Plants - 503; Viruses - 34; Other Eukaryotes - 192 (source: NCBI BLink).  protein_id AT2G30600.3p  transcript_id AT2G30600.3  protein_id AT2G30600.3p  transcript_id AT2G30600.3  
At2g30600	chr2:013037410	0.0	W/13037410-13038219,13038367-13038696,13038783-13039013,13039382-13039543,13039763-13039975,13040072-13040119,13040220-13040278,13040371-13040503,13040620-13040694,13040841-13040921,13041095-13041163,13041257-13041475	AT2G30600.4  CDS  gene_syn AT2G30610, T6B20.5, T6B20_5  go_process cell adhesion|GO:0007155||IEA  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_function protein binding|GO:0005515||ISS  product BTB/POZ domain-containing protein  note BTB/POZ domain-containing protein; FUNCTIONS IN: protein binding; INVOLVED IN: cell adhesion; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ fold (InterPro:IPR011333), Coagulation factor 5/8 type, C-terminal (InterPro:IPR000421), BTB/POZ (InterPro:IPR013069), BTB/Kelch-associated (InterPro:IPR011705), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT2G46260.1); Has 5681 Blast hits to 5383 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 4936; Fungi - 16; Plants - 503; Viruses - 34; Other Eukaryotes - 192 (source: NCBI BLink).  protein_id AT2G30600.4p  transcript_id AT2G30600.4  protein_id AT2G30600.4p  transcript_id AT2G30600.4  
At2g30615	chr2:013041770	0.0	C/13041770-13042342	AT2G30615.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: F-box family protein / S locus-related (TAIR:AT2G43260.1); Has 27 Blast hits to 26 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G30615.1p  transcript_id AT2G30615.1  protein_id AT2G30615.1p  transcript_id AT2G30615.1  
At2g30620	chr2:013045360	0.0	W/13045360-13045560,13045647-13046267	AT2G30620.1  CDS  gene_syn T6B20.3, T6B20_3  go_component nucleolus|GO:0005730|15496452|IDA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_component nucleosome|GO:0000786||ISS  go_component nucleus|GO:0005634||ISS  go_process nucleosome assembly|GO:0006334||ISS  go_function DNA binding|GO:0003677||ISS  product histone H1.2  note histone H1.2; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleolus, nucleus, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Histone H5 (InterPro:IPR005819), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: histone H1, putative (TAIR:AT1G06760.1); Has 17371 Blast hits to 9398 proteins in 1065 species: Archae - 39; Bacteria - 6415; Metazoa - 4684; Fungi - 1032; Plants - 746; Viruses - 137; Other Eukaryotes - 4318 (source: NCBI BLink).  protein_id AT2G30620.1p  transcript_id AT2G30620.1  protein_id AT2G30620.1p  transcript_id AT2G30620.1  
At2g30630	chr2:013048869	0.0	C/13048869-13049106,13048432-13048780,13048136-13048357,13047934-13048054,13047442-13047764,13047218-13047362,13046883-13047143	AT2G30630.2  CDS  gene_syn T11J7.2, T11J7_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, flower, pollen tube; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06750.1); Has 132 Blast hits to 132 proteins in 30 species: Archae - 0; Bacteria - 19; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT2G30630.2p  transcript_id AT2G30630.2  protein_id AT2G30630.2p  transcript_id AT2G30630.2  
At2g30630	chr2:013048869	0.0	C/13048869-13049106,13048557-13048780,13048432-13048493,13048136-13048357,13047934-13048054,13047442-13047764,13047218-13047362,13046883-13047143	AT2G30630.1  CDS  gene_syn T11J7.2, T11J7_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, flower, pollen tube; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06750.1); Has 132 Blast hits to 132 proteins in 30 species: Archae - 0; Bacteria - 19; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT2G30630.1p  transcript_id AT2G30630.1  protein_id AT2G30630.1p  transcript_id AT2G30630.1  
At2g30640	chr2:013049509	0.0	C/13049509-13051773	AT2G30640.1  mRNA_TE_gene  pseudo  gene_syn T11J7.3  note Transposable element gene, Mutator-like transposase family, has a 4.9e-53 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At2g30650	chr2:013056298	0.0	C/13056298-13056315,13056150-13056230,13055995-13056063,13055872-13055935,13055698-13055777,13055516-13055599,13055336-13055420,13055177-13055262,13054727-13054848,13054499-13054559,13054290-13054388,13054124-13054225,13053997-13054038,13053777-13053920	AT2G30650.1  CDS  gene_syn T11J7.4, T11J7_4  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  product catalytic  note catalytic; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: leaf whorl, petal, sepal, pedicel, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: 3-hydroxyisobutyryl-coenzyme A hydrolase, putative / CoA-thioester hydrolase, putative (TAIR:AT2G30660.1); Has 21867 Blast hits to 21860 proteins in 1280 species: Archae - 180; Bacteria - 12877; Metazoa - 1087; Fungi - 491; Plants - 351; Viruses - 0; Other Eukaryotes - 6881 (source: NCBI BLink).  protein_id AT2G30650.1p  transcript_id AT2G30650.1  protein_id AT2G30650.1p  transcript_id AT2G30650.1  
At2g30660	chr2:013061648	0.0	C/13061648-13061665,13061504-13061584,13061289-13061421,13061112-13061191,13060951-13061034,13060765-13060849,13060588-13060673,13059490-13059611,13059210-13059270,13059022-13059120,13058856-13058957,13058724-13058765,13058500-13058643	AT2G30660.1  CDS  gene_syn T11J7.5, T11J7_5  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  product 3-hydroxyisobutyryl-coenzyme A hydrolase, putative / CoA-thioester hydrolase, putative  note 3-hydroxyisobutyryl-coenzyme A hydrolase, putative / CoA-thioester hydrolase, putative; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1); 3-hydroxyisobutyryl-CoA hydrolase (TAIR:AT5G65940.1); Has 21987 Blast hits to 21981 proteins in 1270 species: Archae - 180; Bacteria - 12858; Metazoa - 1132; Fungi - 496; Plants - 356; Viruses - 0; Other Eukaryotes - 6965 (source: NCBI BLink).  protein_id AT2G30660.1p  transcript_id AT2G30660.1  protein_id AT2G30660.1p  transcript_id AT2G30660.1  
At2g30670	chr2:013070840	0.0	C/13070840-13070904,13070535-13070742,13070208-13070424,13069611-13069717,13069313-13069504	AT2G30670.1  CDS  gene_syn T11J7.6, T11J7_6  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product tropinone reductase, putative / tropine dehydrogenase, putative  note tropinone reductase, putative / tropine dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: TRI (tropinone reductase); binding / catalytic/ oxidoreductase (TAIR:AT2G29330.1); Has 80628 Blast hits to 80461 proteins in 2192 species: Archae - 476; Bacteria - 44445; Metazoa - 4447; Fungi - 3946; Plants - 1475; Viruses - 5; Other Eukaryotes - 25834 (source: NCBI BLink).  protein_id AT2G30670.1p  transcript_id AT2G30670.1  protein_id AT2G30670.1p  transcript_id AT2G30670.1  
At2g30680	chr2:013073707	0.0	W/13073707-13073829,13073952-13074090,13074315-13074411,13074492-13074576,13074873-13074980,13075095-13075367	AT2G30680.1  CDS  gene_syn T11J7.7, T11J7_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ATGSL03 (GLUCAN SYNTHASE-LIKE 3); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups (TAIR:AT2G31960.1); Has 38 Blast hits to 38 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G30680.1p  transcript_id AT2G30680.1  protein_id AT2G30680.1p  transcript_id AT2G30680.1  
At2g30690	chr2:013076229	0.0	W/13076229-13077264,13077349-13078595	AT2G30690.1  CDS  gene_syn T11J7.8, T11J7_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G08800.2); Has 23801 Blast hits to 13825 proteins in 756 species: Archae - 66; Bacteria - 5159; Metazoa - 8350; Fungi - 2032; Plants - 875; Viruses - 201; Other Eukaryotes - 7118 (source: NCBI BLink).  protein_id AT2G30690.1p  transcript_id AT2G30690.1  protein_id AT2G30690.1p  transcript_id AT2G30690.1  
At2g30695	chr2:013081048	0.0	C/13081048-13081095,13080880-13080965,13080668-13080711,13080508-13080581,13080295-13080403,13079926-13079939,13079557-13079658,13079269-13079391	AT2G30695.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process protein folding|GO:0006457||IEA  go_process protein transport|GO:0015031||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 207 Blast hits to 207 proteins in 55 species: Archae - 0; Bacteria - 110; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT2G30695.1p  transcript_id AT2G30695.1  protein_id AT2G30695.1p  transcript_id AT2G30695.1  
At2g30695	chr2:013081048	0.0	C/13081048-13081095,13080880-13080965,13080668-13080711,13080508-13080581,13080295-13080403,13079926-13079939,13079557-13079658,13079269-13079391	AT2G30695.2  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process protein folding|GO:0006457||IEA  go_process protein transport|GO:0015031||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 207 Blast hits to 207 proteins in 55 species: Archae - 0; Bacteria - 110; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT2G30695.2p  transcript_id AT2G30695.2  protein_id AT2G30695.2p  transcript_id AT2G30695.2  
At2g30700	chr2:013084330	0.0	C/13084330-13084384,13083084-13083938,13082753-13082998,13082616-13082633,13082365-13082505,13082194-13082241,13082033-13082112	AT2G30700.1  CDS  gene_syn T11J7.9, T11J7_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61900.1); Has 30 Blast hits to 30 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G30700.1p  transcript_id AT2G30700.1  protein_id AT2G30700.1p  transcript_id AT2G30700.1  
At2g30710	chr2:013088918	0.0	C/13088918-13088991,13088618-13088762,13088353-13088533,13088107-13088177,13087699-13087836,13087527-13087618,13087164-13087435,13086626-13086711,13086411-13086512,13086147-13086308	AT2G30710.1  CDS  gene_syn T11J7.10, T11J7_10  go_component intracellular|GO:0005622||IEA  go_process regulation of Rab GTPase activity|GO:0032313||IEA  go_function RAB GTPase activator activity|GO:0005097||IEA  product RabGAP/TBC domain-containing protein  note RabGAP/TBC domain-containing protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: RabGAP/TBC domain-containing protein (TAIR:AT1G04830.1); Has 3502 Blast hits to 3441 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 2056; Fungi - 536; Plants - 303; Viruses - 0; Other Eukaryotes - 607 (source: NCBI BLink).  protein_id AT2G30710.1p  transcript_id AT2G30710.1  protein_id AT2G30710.1p  transcript_id AT2G30710.1  
At2g30720	chr2:013091095	0.0	C/13091095-13091538,13090836-13091007,13090100-13090572,13089851-13089979,13089604-13089753	AT2G30720.1  CDS  gene_syn T11J7.11, T11J7_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function acyl-CoA thioesterase activity|GO:0016291||ISS  go_function hydrolase activity, acting on ester bonds|GO:0016788||ISS  product thioesterase family protein  note thioesterase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell; BEST Arabidopsis thaliana protein match is: thioesterase family protein (TAIR:AT5G48370.1); Has 2007 Blast hits to 1626 proteins in 482 species: Archae - 36; Bacteria - 1098; Metazoa - 461; Fungi - 63; Plants - 36; Viruses - 0; Other Eukaryotes - 313 (source: NCBI BLink).  protein_id AT2G30720.1p  transcript_id AT2G30720.1  protein_id AT2G30720.1p  transcript_id AT2G30720.1  
At2g30730	chr2:013093145	0.0	W/13093145-13093420,13093505-13093631,13093748-13094021,13094112-13094244,13094332-13094418,13094558-13094677	AT2G30730.1  CDS  gene_syn T11J7.12, T11J7_12  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product serine/threonine protein kinase, putative  note serine/threonine protein kinase, putative; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase, active site (InterPro:IPR008266), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase, putative (TAIR:AT2G30740.1); Has 78657 Blast hits to 77831 proteins in 3029 species: Archae - 49; Bacteria - 7421; Metazoa - 34468; Fungi - 5936; Plants - 17540; Viruses - 277; Other Eukaryotes - 12966 (source: NCBI BLink).  protein_id AT2G30730.1p  transcript_id AT2G30730.1  protein_id AT2G30730.1p  transcript_id AT2G30730.1  
At2g30740	chr2:013096399	0.0	W/13096399-13096492,13096764-13097017,13097109-13097235,13097338-13097611,13097698-13097830,13097923-13098009,13098154-13098285	AT2G30740.1  CDS  gene_syn T11J7.13, T11J7_13  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product serine/threonine protein kinase, putative  note serine/threonine protein kinase, putative; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase, active site (InterPro:IPR008266), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase, putative (TAIR:AT1G06700.2); Has 81720 Blast hits to 80883 proteins in 3127 species: Archae - 48; Bacteria - 7524; Metazoa - 36171; Fungi - 6099; Plants - 18053; Viruses - 317; Other Eukaryotes - 13508 (source: NCBI BLink).  protein_id AT2G30740.1p  transcript_id AT2G30740.1  protein_id AT2G30740.1p  transcript_id AT2G30740.1  
At2g30750	chr2:013100985	0.0	C/13100985-13101389,13100321-13100812,13099931-13100215,13099486-13099815	AT2G30750.1  CDS  gene_syn CYP71A12, T11J7.14, T11J7_14, cytochrome P450, family 71, subfamily A, polypeptide 12  gene CYP71A12  function putative cytochrome P450  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process response to bacterium|GO:0009617|17573535|IEP  go_function oxygen binding|GO:0019825||ISS  product CYP71A12 (cytochrome P450, family 71, subfamily A, polypeptide 12); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note cytochrome P450, family 71, subfamily A, polypeptide 12 (CYP71A12); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: response to bacterium; LOCATED IN: endomembrane system; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973); BEST Arabidopsis thaliana protein match is: CYP71A13 (cytochrome P450, family 71, subfamily A, polypeptide 13); indoleacetaldoxime dehydratase/ oxygen binding (TAIR:AT2G30770.1); Has 23912 Blast hits to 23789 proteins in 1273 species: Archae - 21; Bacteria - 2257; Metazoa - 10319; Fungi - 4563; Plants - 5830; Viruses - 3; Other Eukaryotes - 919 (source: NCBI BLink).  protein_id AT2G30750.1p  transcript_id AT2G30750.1  protein_id AT2G30750.1p  transcript_id AT2G30750.1  
At2g30766	chr2:013108068	0.0	W/13108068-13108211	AT2G30766.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G30766.1p  transcript_id AT2G30766.1  protein_id AT2G30766.1p  transcript_id AT2G30766.1  
At2g30760	chr2:013108144	0.0	C/13108144-13108221,13106945-13107049,13105770-13105865	AT2G30760.1  CDS  gene_syn T11J7.15, T11J7_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G30760.1p  transcript_id AT2G30760.1  protein_id AT2G30760.1p  transcript_id AT2G30760.1  
At2g30770	chr2:013111602	0.0	C/13111602-13112006,13110911-13111402,13110532-13110816,13109909-13110238	AT2G30770.1  CDS  gene_syn CYP71A13, T11J7.16, T11J7_16, cytochrome P450, family 71, subfamily A, polypeptide 13  gene CYP71A13  function putative cytochrome P450  go_process response to bacterium|GO:0009617|17573535|IEP  go_process camalexin biosynthetic process|GO:0010120|17573535|IMP  go_process defense response to bacterium|GO:0042742|17573535|IMP  go_process defense response to fungus|GO:0050832|17573535|IMP  go_function oxygen binding|GO:0019825||ISS  go_function indoleacetaldoxime dehydratase activity|GO:0047720|17573535|IDA  product CYP71A13 (cytochrome P450, family 71, subfamily A, polypeptide 13); indoleacetaldoxime dehydratase/ oxygen binding  note cytochrome P450, family 71, subfamily A, polypeptide 13 (CYP71A13); FUNCTIONS IN: indoleacetaldoxime dehydratase activity, oxygen binding; INVOLVED IN: defense response to fungus, defense response to bacterium, response to bacterium, camalexin biosynthetic process; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP71A12 (cytochrome P450, family 71, subfamily A, polypeptide 12); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT2G30750.1); Has 23753 Blast hits to 23624 proteins in 1242 species: Archae - 21; Bacteria - 2302; Metazoa - 10278; Fungi - 4471; Plants - 5779; Viruses - 3; Other Eukaryotes - 899 (source: NCBI BLink).  protein_id AT2G30770.1p  transcript_id AT2G30770.1  protein_id AT2G30770.1p  transcript_id AT2G30770.1  
At2g30780	chr2:013116547	0.0	W/13116547-13116807,13116962-13118059	AT2G30780.1  CDS  gene_syn T11J7.17, T11J7_17  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: shoot apex; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G48000.1); Has 6327 Blast hits to 2792 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 76; Plants - 5938; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink).  protein_id AT2G30780.1p  transcript_id AT2G30780.1  protein_id AT2G30780.1p  transcript_id AT2G30780.1  
At2g30790	chr2:013119845	0.0	C/13119845-13120090,13119752-13119763,13119531-13119746,13119394-13119444,13119047-13119307	AT2G30790.1  CDS  gene_syn OEC23, OXYGEN EVOLVING COMPLEX SUBUNIT 23 KDA, PSBP-2, PSII-P, T11J7.18, T11J7_18, photosystem II subunit P-2  gene PSBP-2  function Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_process photosynthesis|GO:0015979||IEA  go_function calcium ion binding|GO:0005509||IEA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|TAS  go_component oxygen evolving complex|GO:0009654||ISS  go_component chloroplast photosystem II|GO:0030095||ISS  product PSBP-2 (photosystem II subunit P-2); calcium ion binding  note photosystem II subunit P-2 (PSBP-2); FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); BEST Arabidopsis thaliana protein match is: PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1); poly(U) binding (TAIR:AT1G06680.1); Has 217 Blast hits to 217 proteins in 64 species: Archae - 0; Bacteria - 43; Metazoa - 0; Fungi - 0; Plants - 163; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT2G30790.1p  transcript_id AT2G30790.1  protein_id AT2G30790.1p  transcript_id AT2G30790.1  
At2g30800	chr2:013126521	0.0	C/13126521-13126635,13126269-13126359,13125865-13126195,13125636-13125710,13125472-13125516,13125206-13125299,13125031-13125089,13124801-13124926,13124528-13124580,13124235-13124268,13123657-13123746,13122569-13123573,13121345-13122460,13120585-13121250	AT2G30800.1  CDS  gene_syn ATVT-1, HELICASE IN VASCULAR TISSUE AND TAPETUM, HVT1  gene HVT1  function Has RNA or DNA helicase activity and expressed specifically in tapetum and vascular tissue. First identified member of a new group of the mle helicase group of the DEAH family.  go_component nucleus|GO:0005634|9225469|ISS  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function helicase activity|GO:0004386|9225469|ISS  go_function helicase activity|GO:0004386||ISS  go_function ATP binding|GO:0005524||ISS  product HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM); ATP binding / helicase/ nucleic acid binding  note HELICASE IN VASCULAR TISSUE AND TAPETUM (HVT1); FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated region (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Region of unknown function DUF1605 (InterPro:IPR011709), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Single-stranded nucleic acid binding R3H (InterPro:IPR001374), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: NIH (NUCLEAR DEIH-BOXHELICASE); DNA binding / DNA helicase (TAIR:AT1G06670.1); Has 11927 Blast hits to 6865 proteins in 949 species: Archae - 0; Bacteria - 3749; Metazoa - 3443; Fungi - 1466; Plants - 543; Viruses - 402; Other Eukaryotes - 2324 (source: NCBI BLink).  protein_id AT2G30800.1p  transcript_id AT2G30800.1  protein_id AT2G30800.1p  transcript_id AT2G30800.1  
At2g30810	chr2:013128568	0.0	C/13128568-13128630,13128440-13128484,13128224-13128254,13127945-13128126	AT2G30810.1  CDS  gene_syn F7F1.2, F7F1_2  go_component endomembrane system|GO:0012505||IEA  go_process response to gibberellin stimulus|GO:0009739||ISS  product gibberellin-regulated family protein  note gibberellin-regulated family protein; INVOLVED IN: response to gibberellin stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: GASA5 (GAST1 PROTEIN HOMOLOG 5) (TAIR:AT3G02885.1); Has 251 Blast hits to 251 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 251; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G30810.1p  transcript_id AT2G30810.1  protein_id AT2G30810.1p  transcript_id AT2G30810.1  
At2g30820	chr2:013129800	0.0	W/13129800-13129877,13129981-13130029,13130111-13130187,13130889-13131100,13131300-13131981,13132102-13132193,13132316-13132391	AT2G30820.1  CDS  gene_syn F7F1.3, F7F1_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06660.1); Has 285 Blast hits to 218 proteins in 63 species: Archae - 2; Bacteria - 68; Metazoa - 52; Fungi - 43; Plants - 52; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT2G30820.1p  transcript_id AT2G30820.1  protein_id AT2G30820.1p  transcript_id AT2G30820.1  
At2g30820	chr2:013129800	0.0	W/13129800-13129877,13129981-13130029,13130111-13130187,13130889-13131100,13131300-13131981,13132102-13132193,13132316-13132391	AT2G30820.2  CDS  gene_syn F7F1.3, F7F1_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06660.1); Has 285 Blast hits to 218 proteins in 63 species: Archae - 2; Bacteria - 68; Metazoa - 52; Fungi - 43; Plants - 52; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT2G30820.2p  transcript_id AT2G30820.2  protein_id AT2G30820.2p  transcript_id AT2G30820.2  
At2g30830	chr2:013133782	0.0	C/13133782-13134284,13133048-13133369,13132707-13132958	AT2G30830.1  CDS  gene_syn F7F1.4, F7F1_4  function encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function 1-aminocyclopropane-1-carboxylate oxidase activity|GO:0009815|7579161|ISS  product 2-oxoglutarate-dependent dioxygenase, putative  note 2-oxoglutarate-dependent dioxygenase, putative; FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate oxidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, pedicel, stamen; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase, putative (TAIR:AT2G30840.1); Has 5825 Blast hits to 5813 proteins in 689 species: Archae - 0; Bacteria - 753; Metazoa - 121; Fungi - 574; Plants - 3061; Viruses - 0; Other Eukaryotes - 1316 (source: NCBI BLink).  protein_id AT2G30830.1p  transcript_id AT2G30830.1  protein_id AT2G30830.1p  transcript_id AT2G30830.1  
At2g30840	chr2:013136319	0.0	C/13136319-13136833,13135910-13136231,13135581-13135832	AT2G30840.1  CDS  gene_syn F7F1.5, F7F1_5  function encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function 1-aminocyclopropane-1-carboxylate oxidase activity|GO:0009815|7579161|ISS  product 2-oxoglutarate-dependent dioxygenase, putative  note 2-oxoglutarate-dependent dioxygenase, putative; FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate oxidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase, putative (TAIR:AT2G30830.1); Has 5828 Blast hits to 5812 proteins in 688 species: Archae - 0; Bacteria - 749; Metazoa - 122; Fungi - 595; Plants - 3065; Viruses - 0; Other Eukaryotes - 1297 (source: NCBI BLink).  protein_id AT2G30840.1p  transcript_id AT2G30840.1  protein_id AT2G30840.1p  transcript_id AT2G30840.1  
At2g30850	chr2:013137236	0.0	C/13137236-13137308	AT2G30850.1  tRNA  gene_syn 24338.TRNA-ALA-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: AGC)  transcript_id AT2G30850.1  
At2g30860	chr2:013139132	0.0	W/13139132-13139275,13139369-13139417,13139603-13139870,13140040-13140079	AT2G30860.2  CDS  gene_syn ATGSTF7, ATGSTF9, F7F1.7, F7F1_7, GLUTATHIONE S-TRANSFERASE PHI 9, GLUTATHIONE TRANSFERASE, GLUTTR  gene ATGSTF9  function Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_component cytoplasm|GO:0005737|12090627|NAS  go_process defense response|GO:0006952|16538523|IEP  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364|16538523|IDA  go_function glutathione transferase activity|GO:0004364||ISS  go_function glutathione peroxidase activity|GO:0004602|16538523|IDA  product ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9); glutathione peroxidase/ glutathione transferase  note GLUTATHIONE S-TRANSFERASE PHI 9 (ATGSTF9); FUNCTIONS IN: glutathione transferase activity, glutathione peroxidase activity; INVOLVED IN: defense response to bacterium, toxin catabolic process, defense response; LOCATED IN: thylakoid, apoplast, chloroplast, plasma membrane, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: GSTF10 (HALIANA GLUTATHIONE S-TRANSFERASE PHI 10); copper ion binding / glutathione binding / glutathione transferase (TAIR:AT2G30870.1); Has 7624 Blast hits to 7609 proteins in 839 species: Archae - 0; Bacteria - 3457; Metazoa - 1393; Fungi - 337; Plants - 633; Viruses - 0; Other Eukaryotes - 1804 (source: NCBI BLink).  protein_id AT2G30860.2p  transcript_id AT2G30860.2  protein_id AT2G30860.2p  transcript_id AT2G30860.2  
At2g30860	chr2:013139132	0.0	W/13139132-13139275,13139369-13139417,13139603-13140057	AT2G30860.1  CDS  gene_syn ATGSTF7, ATGSTF9, F7F1.7, F7F1_7, GLUTATHIONE S-TRANSFERASE PHI 9, GLUTATHIONE TRANSFERASE, GLUTTR  gene ATGSTF9  function Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_function copper ion binding|GO:0005507|16526091|IDA  go_function glutathione binding|GO:0043295|15159623|IDA  go_component cytoplasm|GO:0005737|12090627|NAS  go_process defense response|GO:0006952|16538523|IEP  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364|16538523|IDA  go_function glutathione transferase activity|GO:0004364||ISS  go_function glutathione peroxidase activity|GO:0004602|16538523|IDA  product ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9); copper ion binding / glutathione binding / glutathione peroxidase/ glutathione transferase  note GLUTATHIONE S-TRANSFERASE PHI 9 (ATGSTF9); FUNCTIONS IN: glutathione transferase activity, glutathione peroxidase activity, copper ion binding, glutathione binding; INVOLVED IN: defense response to bacterium, toxin catabolic process, defense response; LOCATED IN: in 7 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: GSTF10 (HALIANA GLUTATHIONE S-TRANSFERASE PHI 10); copper ion binding / glutathione binding / glutathione transferase (TAIR:AT2G30870.1); Has 11763 Blast hits to 11740 proteins in 1001 species: Archae - 0; Bacteria - 5628; Metazoa - 2049; Fungi - 542; Plants - 734; Viruses - 0; Other Eukaryotes - 2810 (source: NCBI BLink).  protein_id AT2G30860.1p  transcript_id AT2G30860.1  protein_id AT2G30860.1p  transcript_id AT2G30860.1  
At2g30870	chr2:013141490	0.0	W/13141490-13141633,13141720-13141768,13141938-13142392	AT2G30870.1  CDS  gene_syn ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 10, ATGSTF10, ATGSTF4, EARLY DEHYDRATION-INDUCED 13, ERD13, F7F1.8, F7F1_8, GLUTATHIONE S-TRANSFERASE, GSTF10, HALIANA GLUTATHIONE S-TRANSFERASE PHI 10  gene GSTF10  function early dehydration-induced gene ERD13 homologous to tobacco and maize glutathione S-transferases. Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002)  go_component cell wall|GO:0005618|16287169|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function copper ion binding|GO:0005507|16526091|IDA  go_function glutathione binding|GO:0043295|15159623|IDA  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_process response to water deprivation|GO:0009414|8075396|IEP  go_process response to water deprivation|GO:0009414|8253194|IEP  go_function glutathione transferase activity|GO:0004364||ISS  product GSTF10 (HALIANA GLUTATHIONE S-TRANSFERASE PHI 10); copper ion binding / glutathione binding / glutathione transferase  note HALIANA GLUTATHIONE S-TRANSFERASE PHI 10 (GSTF10); FUNCTIONS IN: glutathione transferase activity, copper ion binding, glutathione binding; INVOLVED IN: response to cadmium ion, response to water deprivation, toxin catabolic process; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9); copper ion binding / glutathione binding / glutathione peroxidase/ glutathione transferase (TAIR:AT2G30860.1); Has 14144 Blast hits to 14120 proteins in 1116 species: Archae - 0; Bacteria - 6875; Metazoa - 2305; Fungi - 564; Plants - 928; Viruses - 0; Other Eukaryotes - 3472 (source: NCBI BLink).  protein_id AT2G30870.1p  transcript_id AT2G30870.1  protein_id AT2G30870.1p  transcript_id AT2G30870.1  
At2g30880	chr2:013145695	0.0	C/13145695-13145718,13145475-13145582,13145206-13145267,13145030-13145113,13144904-13144935,13144714-13144795,13144223-13144451,13143754-13143981,13143375-13143671	AT2G30880.2  CDS  gene_syn F7F1.9, F7F1_9  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process signal transduction|GO:0007165|15358268|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product pleckstrin homology (PH) domain-containing protein  note pleckstrin homology (PH) domain-containing protein; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: plant-type cell wall; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Pleckstrin homology (InterPro:IPR001849); Has 2037 Blast hits to 1827 proteins in 246 species: Archae - 10; Bacteria - 226; Metazoa - 999; Fungi - 204; Plants - 147; Viruses - 3; Other Eukaryotes - 448 (source: NCBI BLink).  protein_id AT2G30880.2p  transcript_id AT2G30880.2  protein_id AT2G30880.2p  transcript_id AT2G30880.2  
At2g30880	chr2:013145695	0.0	C/13145695-13145718,13145475-13145582,13145206-13145267,13145030-13145113,13144904-13144935,13144714-13144795,13144223-13144451,13143754-13143981,13143379-13143671,13142926-13143298	AT2G30880.1  CDS  gene_syn F7F1.9, F7F1_9  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process signal transduction|GO:0007165|15358268|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product pleckstrin homology (PH) domain-containing protein  note pleckstrin homology (PH) domain-containing protein; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: plant-type cell wall; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Pleckstrin homology (InterPro:IPR001849); Has 6899 Blast hits to 5667 proteins in 576 species: Archae - 48; Bacteria - 733; Metazoa - 3728; Fungi - 572; Plants - 341; Viruses - 17; Other Eukaryotes - 1460 (source: NCBI BLink).  protein_id AT2G30880.1p  transcript_id AT2G30880.1  protein_id AT2G30880.1p  transcript_id AT2G30880.1  
At2g30890	chr2:013147774	0.0	W/13147774-13147902,13148231-13148398,13148956-13149104,13149336-13149663	AT2G30890.1  CDS  gene_syn F7F1.10, F7F1_10  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product membrane protein, putative  note membrane protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593); BEST Arabidopsis thaliana protein match is: cytochrome B561-related (TAIR:AT4G18260.1); Has 276 Blast hits to 276 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 49; Plants - 194; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT2G30890.1p  transcript_id AT2G30890.1  protein_id AT2G30890.1p  transcript_id AT2G30890.1  
At2g30900	chr2:013150484	0.0	W/13150484-13150770,13151259-13151436,13151527-13151702,13151791-13151949,13152114-13152417	AT2G30900.1  CDS  gene_syn F7F1.11, F7F1_11  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42570.1); Has 716 Blast hits to 699 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 714; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G30900.1p  transcript_id AT2G30900.1  protein_id AT2G30900.1p  transcript_id AT2G30900.1  
At2g30910	chr2:013153447	0.0	W/13153447-13153516,13153887-13153975,13154171-13154247,13154351-13154445,13154562-13154631,13154890-13154959,13155195-13155268,13155356-13155398,13155520-13155601,13155737-13155825,13155920-13156005,13156163-13156226,13156426-13156526,13156649-13156707,13156802-13156869	AT2G30910.1  CDS  gene_syn ACTIN-RELATED PROTEIN C1, ACTIN-RELATED PROTEIN C1A, ARPC1, ARPC1A, F7F1.12, F7F1_12  gene ARPC1A  go_function actin binding|GO:0003779||IEA  go_component nucleus|GO:0005634|15469496|IDA  go_component cytoplasm|GO:0005737|15469496|IDA  go_component Arp2/3 protein complex|GO:0005885|15653407|TAS  go_process actin filament organization|GO:0007015|10572033|TAS  go_function nucleotide binding|GO:0000166||ISS  product ARPC1A (ACTIN-RELATED PROTEIN C1A); actin binding / nucleotide binding  note ACTIN-RELATED PROTEIN C1A (ARPC1A); FUNCTIONS IN: actin binding, nucleotide binding; INVOLVED IN: actin filament organization; LOCATED IN: Arp2/3 protein complex, nucleus, cytoplasm; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Actin-related protein 2/3 complex, subunit 1 (InterPro:IPR017383), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: ARPC1B (ACTIN-RELATED PROTEIN C1B); actin binding / nucleotide binding (TAIR:AT2G31300.1); Has 2938 Blast hits to 2211 proteins in 211 species: Archae - 4; Bacteria - 568; Metazoa - 1250; Fungi - 551; Plants - 184; Viruses - 0; Other Eukaryotes - 381 (source: NCBI BLink).  protein_id AT2G30910.1p  transcript_id AT2G30910.1  protein_id AT2G30910.1p  transcript_id AT2G30910.1  
At2g30910	chr2:013153447	0.0	W/13153447-13153516,13153887-13153975,13154171-13154247,13154351-13154445,13154562-13154631,13154890-13154959,13155195-13155287,13155496-13155601,13155737-13155825,13155920-13156005,13156163-13156226,13156426-13156526,13156649-13156707,13156802-13156869	AT2G30910.2  CDS  gene_syn ACTIN-RELATED PROTEIN C1, ACTIN-RELATED PROTEIN C1A, ARPC1, ARPC1A, F7F1.12, F7F1_12  gene ARPC1A  go_function actin binding|GO:0003779||IEA  go_component nucleus|GO:0005634|15469496|IDA  go_component cytoplasm|GO:0005737|15469496|IDA  go_component Arp2/3 protein complex|GO:0005885|15653407|TAS  go_process actin filament organization|GO:0007015|10572033|TAS  go_function nucleotide binding|GO:0000166||ISS  product ARPC1A (ACTIN-RELATED PROTEIN C1A); actin binding / nucleotide binding  note ACTIN-RELATED PROTEIN C1A (ARPC1A); FUNCTIONS IN: actin binding, nucleotide binding; INVOLVED IN: actin filament organization; LOCATED IN: Arp2/3 protein complex, nucleus, cytoplasm; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Actin-related protein 2/3 complex, subunit 1 (InterPro:IPR017383), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: ARPC1B (ACTIN-RELATED PROTEIN C1B); actin binding / nucleotide binding (TAIR:AT2G31300.1); Has 2602 Blast hits to 1951 proteins in 206 species: Archae - 4; Bacteria - 533; Metazoa - 1077; Fungi - 474; Plants - 170; Viruses - 0; Other Eukaryotes - 344 (source: NCBI BLink).  protein_id AT2G30910.2p  transcript_id AT2G30910.2  protein_id AT2G30910.2p  transcript_id AT2G30910.2  
At2g30920	chr2:013159553	0.0	C/13159553-13159824,13159159-13159248,13159010-13159088,13158686-13158763,13158351-13158399,13158182-13158231,13157905-13158054,13157712-13157792,13157409-13157528	AT2G30920.1  CDS  gene_syn ARABDIOPSIS THALIANA COENZYME Q 3, ATCOQ3, COQ3, EMB3002, F7F1.13, F7F1_13, embryo defective 3002  gene ATCOQ3  function The enzyme encoded by this gene has been shown to complement the Saccharomyces cerevisiae coq3 mutation and, therefore, to have hexaprenyldihydroxybenzoate methyltransferase activity. It is however likely that, in Arabidopsis, the enzyme catalyzes the methylation of nonaprenyldihydroxybenzoate as it is the prevalent polyprenoid in this plant species. The enzyme is a mitochondrial-localized methyltransferase involved in ubiquinone biosynthesis.  go_component mitochondrial envelope|GO:0005740|9628017|IEP  go_process ubiquinone biosynthetic process|GO:0006744|9628017|IGI  go_process ubiquinone biosynthetic process|GO:0006744|9628017|ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function hexaprenyldihydroxybenzoate methyltransferase activity|GO:0004395|9628017|IGI  go_function polyprenyldihydroxybenzoate methyltransferase activity|GO:0010420|9628017|IGI  product ATCOQ3 (ARABDIOPSIS THALIANA COENZYME Q 3); hexaprenyldihydroxybenzoate methyltransferase/ polyprenyldihydroxybenzoate methyltransferase  note ARABDIOPSIS THALIANA COENZYME Q 3 (ATCOQ3); FUNCTIONS IN: polyprenyldihydroxybenzoate methyltransferase activity, hexaprenyldihydroxybenzoate methyltransferase activity; INVOLVED IN: embryonic development ending in seed dormancy, ubiquinone biosynthetic process; LOCATED IN: mitochondrial envelope; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216), Ubiquinone biosynthesis O-methyltransferase (InterPro:IPR010233); Has 5180 Blast hits to 5180 proteins in 1044 species: Archae - 80; Bacteria - 2416; Metazoa - 117; Fungi - 118; Plants - 49; Viruses - 0; Other Eukaryotes - 2400 (source: NCBI BLink).  protein_id AT2G30920.1p  transcript_id AT2G30920.1  protein_id AT2G30920.1p  transcript_id AT2G30920.1  
At2g30925	chr2:013161815	0.0	W/13161815-13161943	AT2G30925.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G30925.1p  transcript_id AT2G30925.1  protein_id AT2G30925.1p  transcript_id AT2G30925.1  
At2g30930	chr2:013162458	0.0	W/13162458-13162685,13162764-13162949,13163076-13163156	AT2G30930.1  CDS  gene_syn F7F1.14, F7F1_14  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06540.1); Has 160 Blast hits to 144 proteins in 62 species: Archae - 0; Bacteria - 81; Metazoa - 13; Fungi - 20; Plants - 8; Viruses - 3; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT2G30930.1p  transcript_id AT2G30930.1  protein_id AT2G30930.1p  transcript_id AT2G30930.1  
At2g30933	chr2:013166460	0.0	C/13166460-13166517,13165235-13165656	AT2G30933.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: glucan endo-1,3-beta-glucosidase-related (TAIR:AT1G09460.1); Has 762 Blast hits to 726 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 759; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G30933.2p  transcript_id AT2G30933.2  protein_id AT2G30933.2p  transcript_id AT2G30933.2  
At2g30933	chr2:013166460	0.0	C/13166460-13166517,13165240-13165656,13164463-13164493,13164179-13164356	AT2G30933.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29380.1); Has 799 Blast hits to 763 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 23; Plants - 773; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G30933.1p  transcript_id AT2G30933.1  protein_id AT2G30933.1p  transcript_id AT2G30933.1  
At2g30940	chr2:013168533	0.0	W/13168533-13169128,13169197-13169307,13169388-13169510,13169602-13169848,13169927-13170187	AT2G30940.1  CDS  gene_syn F7F1.15, F7F1_15  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: flower, cultured cell; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G01540.2); Has 38508 Blast hits to 38119 proteins in 1287 species: Archae - 17; Bacteria - 2217; Metazoa - 15647; Fungi - 2016; Plants - 13889; Viruses - 128; Other Eukaryotes - 4594 (source: NCBI BLink).  protein_id AT2G30940.1p  transcript_id AT2G30940.1  protein_id AT2G30940.1p  transcript_id AT2G30940.1  
At2g30940	chr2:013168533	0.0	W/13168533-13169128,13169197-13169307,13169388-13169510,13169602-13169854,13169927-13170187	AT2G30940.2  CDS  gene_syn F7F1.15, F7F1_15  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: flower, cultured cell; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G01540.2); Has 38364 Blast hits to 37975 proteins in 1287 species: Archae - 17; Bacteria - 2157; Metazoa - 15577; Fungi - 2002; Plants - 13903; Viruses - 129; Other Eukaryotes - 4579 (source: NCBI BLink).  protein_id AT2G30940.2p  transcript_id AT2G30940.2  protein_id AT2G30940.2p  transcript_id AT2G30940.2  
At2g30942	chr2:013170953	0.0	W/13170953-13171037,13171288-13171360,13171823-13171835	AT2G30942.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06515.1); Has 42 Blast hits to 42 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 10; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G30942.1p  transcript_id AT2G30942.1  protein_id AT2G30942.1p  transcript_id AT2G30942.1  
At2g30950	chr2:013174692	0.0	W/13174692-13175864,13175950-13176263,13176350-13176590,13176705-13177064	AT2G30950.1  CDS  gene_syn F7F1.16, F7F1_16, FTSH2, VAR2, VARIEGATED 2  gene VAR2  function Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype, which decreases during development. Transcript and protein levels increase with light intensity.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_component chloroplast|GO:0009507|11134419|IDA  go_component chloroplast|GO:0009507|14630971|IDA  go_component chloroplast thylakoid membrane|GO:0009535|10849347|IDA  go_component chloroplast thylakoid membrane|GO:0009535|8910594|IDA  go_process thylakoid membrane organization|GO:0010027|10849347|IMP  go_process photoinhibition|GO:0010205|11717304|IMP  go_process PSII associated light-harvesting complex II catabolic process|GO:0010304|16157880|TAS  go_function ATP-dependent peptidase activity|GO:0004176|10849347|ISS  go_function ATP-dependent peptidase activity|GO:0004176|11299370|ISS  go_function metallopeptidase activity|GO:0008237|11134419|ISS  go_function metallopeptidase activity|GO:0008237||ISS  go_function zinc ion binding|GO:0008270||ISS  go_function ATPase activity|GO:0016887||ISS  product VAR2 (VARIEGATED 2); ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion binding  note VARIEGATED 2 (VAR2); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding; INVOLVED IN: photoinhibition, thylakoid membrane organization, PSII associated light-harvesting complex II catabolic process; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH8; ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion binding (TAIR:AT1G06430.1); Has 29487 Blast hits to 27855 proteins in 1883 species: Archae - 924; Bacteria - 9968; Metazoa - 4187; Fungi - 2495; Plants - 1807; Viruses - 23; Other Eukaryotes - 10083 (source: NCBI BLink).  protein_id AT2G30950.1p  transcript_id AT2G30950.1  protein_id AT2G30950.1p  transcript_id AT2G30950.1  
At2g30960	chr2:013177541	0.0	C/13177541-13178323	AT2G30960.1  CDS  gene_syn F7F1.17, F7F1_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; Has 5127 Blast hits to 2914 proteins in 263 species: Archae - 5; Bacteria - 275; Metazoa - 1977; Fungi - 542; Plants - 204; Viruses - 5; Other Eukaryotes - 2119 (source: NCBI BLink).  protein_id AT2G30960.1p  transcript_id AT2G30960.1  protein_id AT2G30960.1p  transcript_id AT2G30960.1  
At2g30970	chr2:013179012	0.0	W/13179012-13179203,13179413-13179498,13179824-13180030,13180154-13180259,13180344-13180448,13180546-13180718,13180918-13181077,13181203-13181298,13181390-13181484,13181614-13181686	AT2G30970.1  CDS  gene_syn ASP1, ASPARTATE AMINOTRANSFERASE 1, F7F1.18, F7F1_18  gene ASP1  function ASPARTATE AMINOTRANSFERASE 1  go_component mitochondrion|GO:0005739|18385124|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|9535706|IDA  go_function L-aspartate:2-oxoglutarate aminotransferase activity|GO:0004069|9535706|IDA  product ASP1 (ASPARTATE AMINOTRANSFERASE 1); L-aspartate:2-oxoglutarate aminotransferase  note ASPARTATE AMINOTRANSFERASE 1 (ASP1); FUNCTIONS IN: L-aspartate:2-oxoglutarate aminotransferase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase, class I and II (InterPro:IPR004839), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Aspartate/other aminotransferase (InterPro:IPR000796), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: ASP2 (ASPARTATE AMINOTRANSFERASE 2); L-aspartate:2-oxoglutarate aminotransferase (TAIR:AT5G19550.1); Has 3627 Blast hits to 3623 proteins in 842 species: Archae - 4; Bacteria - 2076; Metazoa - 398; Fungi - 262; Plants - 313; Viruses - 0; Other Eukaryotes - 574 (source: NCBI BLink).  protein_id AT2G30970.1p  transcript_id AT2G30970.1  protein_id AT2G30970.1p  transcript_id AT2G30970.1  
At2g30970	chr2:013179012	0.0	W/13179012-13179203,13179413-13179498,13179824-13180030,13180154-13180259,13180344-13180448,13180546-13180718,13180918-13181077,13181203-13181298,13181390-13181484,13181614-13181686	AT2G30970.2  CDS  gene_syn ASP1, ASPARTATE AMINOTRANSFERASE 1, F7F1.18, F7F1_18  gene ASP1  function ASPARTATE AMINOTRANSFERASE 1  go_component mitochondrion|GO:0005739|18385124|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|9535706|IDA  go_function L-aspartate:2-oxoglutarate aminotransferase activity|GO:0004069|9535706|IDA  product ASP1 (ASPARTATE AMINOTRANSFERASE 1); L-aspartate:2-oxoglutarate aminotransferase  note ASPARTATE AMINOTRANSFERASE 1 (ASP1); FUNCTIONS IN: L-aspartate:2-oxoglutarate aminotransferase activity; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase, class I and II (InterPro:IPR004839), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Aspartate/other aminotransferase (InterPro:IPR000796), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: ASP2 (ASPARTATE AMINOTRANSFERASE 2); L-aspartate:2-oxoglutarate aminotransferase (TAIR:AT5G19550.1); Has 3627 Blast hits to 3623 proteins in 842 species: Archae - 4; Bacteria - 2076; Metazoa - 398; Fungi - 262; Plants - 313; Viruses - 0; Other Eukaryotes - 574 (source: NCBI BLink).  protein_id AT2G30970.2p  transcript_id AT2G30970.2  protein_id AT2G30970.2p  transcript_id AT2G30970.2  
At2g30980	chr2:013185760	0.0	C/13185760-13185870,13184556-13184648,13184283-13184342,13183928-13184200,13183765-13183839,13183632-13183688,13183303-13183443,13183158-13183208,13182987-13183082,13182778-13182861,13182548-13182649,13182350-13182445	AT2G30980.1  CDS  gene_syn ASKdZeta, ATSK23, Arabidopsis SHAGGY-related protein kinase dZeta, F7F1.19, F7F1_19, SHAGGY-LIKE PROTEIN KINASE 23  gene ASKdZeta  function Encodes a GSK3-linke protein kinase. This protein can interact with the BZR1 protein involved in brassinosteroid-mediated signaling in a Y2H assay and promotes BZR1 phosphorylation in protoplasts.  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468|17873094|IDA  go_process brassinosteroid mediated signaling|GO:0009742|17873094|IPI  go_process regulation of protein localization|GO:0032880|17873094|IDA  go_function kinase activity|GO:0016301||ISS  product ASKdZeta (Arabidopsis SHAGGY-related protein kinase dZeta); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note Arabidopsis SHAGGY-related protein kinase dZeta (ASKdZeta); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: brassinosteroid mediated signaling, protein amino acid phosphorylation, regulation of protein localization; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1); glycogen synthase kinase 3/ kinase (TAIR:AT1G06390.2); Has 80172 Blast hits to 79225 proteins in 2625 species: Archae - 34; Bacteria - 5961; Metazoa - 34342; Fungi - 7804; Plants - 16237; Viruses - 383; Other Eukaryotes - 15411 (source: NCBI BLink).  protein_id AT2G30980.1p  transcript_id AT2G30980.1  protein_id AT2G30980.1p  transcript_id AT2G30980.1  
At2g30984	chr2:013186544	0.0	C/13186544-13187253	AT2G30984.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G30985  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G30984.1  
At2g30985	chr2:013186906	0.0	W/13186906-13187064	AT2G30985.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G30985.1p  transcript_id AT2G30985.1  protein_id AT2G30985.1p  transcript_id AT2G30985.1  
At2g30990	chr2:013188796	0.0	C/13188796-13189761,13187917-13188702,13187776-13187805	AT2G30990.1  CDS  gene_syn F7F1.20, F7F1_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29240.1); Has 164 Blast hits to 149 proteins in 44 species: Archae - 0; Bacteria - 20; Metazoa - 21; Fungi - 15; Plants - 53; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT2G30990.1p  transcript_id AT2G30990.1  protein_id AT2G30990.1p  transcript_id AT2G30990.1  
At2g30990	chr2:013188796	0.0	C/13188796-13189761,13187917-13188702,13187776-13187805	AT2G30990.2  CDS  gene_syn F7F1.20, F7F1_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29240.1); Has 164 Blast hits to 149 proteins in 44 species: Archae - 0; Bacteria - 20; Metazoa - 21; Fungi - 15; Plants - 53; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT2G30990.2p  transcript_id AT2G30990.2  protein_id AT2G30990.2p  transcript_id AT2G30990.2  
At2g30990	chr2:013189340	0.0	C/13189340-13189761,13188796-13189249,13187917-13188702,13187776-13187805	AT2G30990.3  CDS  gene_syn F7F1.20, F7F1_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29240.1); Has 138 Blast hits to 123 proteins in 39 species: Archae - 0; Bacteria - 20; Metazoa - 25; Fungi - 10; Plants - 44; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT2G30990.3p  transcript_id AT2G30990.3  protein_id AT2G30990.3p  transcript_id AT2G30990.3  
At2g31005	chr2:013193504	0.0	W/13193504-13193557,13193606-13193797	AT2G31005.1  CDS  function Encodes a Cysteine-rich peptide (CRP) family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G31005.1p  transcript_id AT2G31005.1  protein_id AT2G31005.1p  transcript_id AT2G31005.1  
At2g31010	chr2:013194939	0.0	W/13194939-13195163,13195247-13195450,13195690-13195878,13196003-13196253,13196365-13196484,13196573-13196665,13196916-13197011,13197167-13197244,13197670-13197757,13197915-13198152,13198384-13198507,13198608-13198627,13198760-13198916,13199012-13199300,13199383-13199455,13199560-13199642	AT2G31010.1  CDS  gene_syn F7F1.22, F7F1_22  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G58640.2); Has 89984 Blast hits to 88359 proteins in 3449 species: Archae - 53; Bacteria - 7096; Metazoa - 40695; Fungi - 7358; Plants - 18555; Viruses - 473; Other Eukaryotes - 15754 (source: NCBI BLink).  protein_id AT2G31010.1p  transcript_id AT2G31010.1  protein_id AT2G31010.1p  transcript_id AT2G31010.1  
At2g31018	chr2:013201432	0.0	C/13201432-13201551	AT2G31018.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G31018.1p  transcript_id AT2G31018.1  protein_id AT2G31018.1p  transcript_id AT2G31018.1  
At2g31020	chr2:013201668	0.0	W/13201668-13202141,13202469-13202825,13202904-13202973,13203050-13203480,13203570-13203725,13203811-13203978,13204056-13204682	AT2G31020.1  CDS  gene_syn F7F1.23, F7F1_23, ORP1A, OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A  gene ORP1A  go_process steroid metabolic process|GO:0008202||IEA  go_process steroid metabolic process|GO:0008202||ISS  go_function oxysterol binding|GO:0008142||ISS  product ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A); oxysterol binding  note OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A (ORP1A); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Oxysterol-binding protein (InterPro:IPR000648), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: ORP1C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1C); oxysterol binding / phosphoinositide binding (TAIR:AT4G08180.3); Has 2224 Blast hits to 2027 proteins in 171 species: Archae - 0; Bacteria - 10; Metazoa - 1284; Fungi - 487; Plants - 169; Viruses - 7; Other Eukaryotes - 267 (source: NCBI BLink).  protein_id AT2G31020.1p  transcript_id AT2G31020.1  protein_id AT2G31020.1p  transcript_id AT2G31020.1  
At2g31030	chr2:013206004	0.0	W/13206004-13206244,13206333-13206622,13206708-13206863,13206955-13207122,13207201-13207815	AT2G31030.1  CDS  gene_syn F7F1.24, F7F1_24, ORP1B, OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1B  gene ORP1B  go_process steroid metabolic process|GO:0008202||IEA  go_component cellular_component|GO:0005575||ND  go_process steroid metabolic process|GO:0008202||ISS  go_function oxysterol binding|GO:0008142||ISS  product ORP1B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1B); oxysterol binding  note OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1B (ORP1B); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Oxysterol-binding protein (InterPro:IPR000648); BEST Arabidopsis thaliana protein match is: ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A); oxysterol binding (TAIR:AT2G31020.1); Has 1756 Blast hits to 1715 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 960; Fungi - 409; Plants - 158; Viruses - 0; Other Eukaryotes - 229 (source: NCBI BLink).  protein_id AT2G31030.1p  transcript_id AT2G31030.1  protein_id AT2G31030.1p  transcript_id AT2G31030.1  
At2g31035	chr2:013208667	0.0	W/13208667-13208918	AT2G31035.1  CDS  gene_syn F7F1.25, F7F1_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: ORP1B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1B); oxysterol binding (TAIR:AT2G31030.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31035.1p  transcript_id AT2G31035.1  protein_id AT2G31035.1p  transcript_id AT2G31035.1  
At2g31040	chr2:013210704	0.0	C/13210704-13211012,13210576-13210625,13210383-13210479,13210208-13210303,13209970-13210050,13209711-13209802,13209533-13209625,13209359-13209427,13209094-13209259	AT2G31040.1  CDS  gene_syn T16B12.15, T16B12_15  go_component chloroplast|GO:0009507||IEA  go_component proton-transporting ATP synthase complex, coupling factor F(o)|GO:0045263||IEA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_function hydrogen ion transmembrane transporter activity|GO:0015078||IEA  product ATP synthase protein I -related  note ATP synthase protein I -related; FUNCTIONS IN: hydrogen ion transmembrane transporter activity; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: proton-transporting ATP synthase complex, coupling factor F(o), chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F0 complex, subunit I, bacillus-type (InterPro:IPR008413); Has 143 Blast hits to 143 proteins in 57 species: Archae - 0; Bacteria - 88; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 2; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT2G31040.1p  transcript_id AT2G31040.1  protein_id AT2G31040.1p  transcript_id AT2G31040.1  
At2g31050	chr2:013212150	0.0	W/13212150-13212752	AT2G31050.1  CDS  gene_syn T16B12.14  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function copper ion binding|GO:0005507||ISS  product plastocyanin-like domain-containing protein  note plastocyanin-like domain-containing protein; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to membrane; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: plastocyanin-like domain-containing protein / mavicyanin, putative (TAIR:AT2G26720.1); Has 830 Blast hits to 819 proteins in 49 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 816; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT2G31050.1p  transcript_id AT2G31050.1  protein_id AT2G31050.1p  transcript_id AT2G31050.1  
At2g31060	chr2:013217554	0.0	C/13217554-13217686,13217386-13217454,13217124-13217296,13216480-13216617,13216265-13216390,13216028-13216126,13215672-13215792,13215473-13215536,13214951-13215130,13214776-13214849,13214417-13214466,13214207-13214293,13214022-13214072,13213864-13213947,13213709-13213759,13213496-13213579	AT2G31060.1  CDS  gene_syn T16B12.13, T16B12_13  go_component intracellular|GO:0005622||IEA  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_function translation elongation factor activity|GO:0003746||ISS  go_function GTP binding|GO:0005525||ISS  product elongation factor family protein  note elongation factor family protein; FUNCTIONS IN: GTP binding, translation elongation factor activity, GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), GTP-binding protein TypA (InterPro:IPR006298), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Elongation factor G, III and V (InterPro:IPR009022), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: elongation factor family protein (TAIR:AT5G13650.2); Has 25106 Blast hits to 25082 proteins in 3221 species: Archae - 312; Bacteria - 13954; Metazoa - 1068; Fungi - 612; Plants - 655; Viruses - 0; Other Eukaryotes - 8505 (source: NCBI BLink).  protein_id AT2G31060.1p  transcript_id AT2G31060.1  protein_id AT2G31060.1p  transcript_id AT2G31060.1  
At2g31060	chr2:013218218	0.0	C/13218218-13218544,13217899-13217973,13217554-13217704,13217386-13217454,13217124-13217296,13216480-13216617,13216265-13216390,13216028-13216126,13215672-13215792,13215473-13215536,13214951-13215130,13214776-13214849,13214417-13214466,13214207-13214293,13214022-13214072,13213864-13213947,13213709-13213759,13213496-13213579	AT2G31060.2  CDS  gene_syn T16B12.13, T16B12_13  go_component intracellular|GO:0005622||IEA  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_function translation elongation factor activity|GO:0003746||ISS  go_function GTP binding|GO:0005525||ISS  product elongation factor family protein  note elongation factor family protein; FUNCTIONS IN: GTP binding, translation elongation factor activity, GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding protein TypA (InterPro:IPR006298), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Elongation factor G, III and V (InterPro:IPR009022), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: elongation factor family protein (TAIR:AT5G13650.2); Has 57588 Blast hits to 53803 proteins in 9459 species: Archae - 666; Bacteria - 25964; Metazoa - 8718; Fungi - 3160; Plants - 1202; Viruses - 0; Other Eukaryotes - 17878 (source: NCBI BLink).  protein_id AT2G31060.2p  transcript_id AT2G31060.2  protein_id AT2G31060.2p  transcript_id AT2G31060.2  
At2g31070	chr2:013220984	0.0	C/13220984-13222069	AT2G31070.1  CDS  gene_syn T16B12.12, T16B12_12, TCP DOMAIN PROTEIN 10, TCP10  gene TCP10  function TCP family protein involved in heterchronic regulation of leaf differentiation.  go_component cellular_component|GO:0005575||ND  go_process leaf morphogenesis|GO:0009965|18805992|IGI  go_process cell differentiation|GO:0030154|18805992|IGI  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process positive regulation of development, heterochronic|GO:0045962|18805992|IGI  go_process leaf development|GO:0048366|16169896|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product TCP10 (TCP DOMAIN PROTEIN 10); transcription factor  note TCP DOMAIN PROTEIN 10 (TCP10); FUNCTIONS IN: transcription factor activity; INVOLVED IN: cell differentiation, positive regulation of development, heterochronic, leaf development, leaf morphogenesis, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP4 (TCP family transcription factor 4); transcription factor (TAIR:AT3G15030.2); Has 1661 Blast hits to 1560 proteins in 331 species: Archae - 0; Bacteria - 4; Metazoa - 255; Fungi - 34; Plants - 1201; Viruses - 0; Other Eukaryotes - 167 (source: NCBI BLink).  protein_id AT2G31070.1p  transcript_id AT2G31070.1  protein_id AT2G31070.1p  transcript_id AT2G31070.1  
At2g31080	chr2:013223059	0.0	C/13223059-13227048	AT2G31080.1  mRNA_TE_gene  pseudo  gene_syn T16B12.11, T16B12_11  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.3e-49 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At2g31081	chr2:013238103	0.0	W/13238103-13238345	AT2G31081.1  CDS  gene_syn CLAVATA3/ESR-RELATED 4, CLE4  gene CLE4  function Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.  go_component apoplast|GO:0048046|11457943|RCA  go_process signal transduction|GO:0007165||ISS  go_process regulation of meristem growth|GO:0010075|16489133|IMP  go_function receptor binding|GO:0005102||ISS  go_function protein binding|GO:0005515|11457943|ISS  product CLE4 (CLAVATA3/ESR-RELATED 4); protein binding / receptor binding  note CLAVATA3/ESR-RELATED 4 (CLE4); FUNCTIONS IN: protein binding, receptor binding; INVOLVED IN: regulation of meristem growth, signal transduction; LOCATED IN: apoplast; BEST Arabidopsis thaliana protein match is: CLE3 (CLAVATA3/ESR-RELATED 3); protein binding / receptor binding (TAIR:AT1G06225.1); Has 10 Blast hits to 10 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31081.1p  transcript_id AT2G31081.1  protein_id AT2G31081.1p  transcript_id AT2G31081.1  
At2g31082	chr2:013241440	0.0	W/13241440-13241700	AT2G31082.1  CDS  gene_syn CLAVATA3/ESR-RELATED 7, CLE7  gene CLE7  function Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.  go_component apoplast|GO:0048046|11457943|RCA  go_process signal transduction|GO:0007165||ISS  go_function receptor binding|GO:0005102||ISS  go_function protein binding|GO:0005515|11457943|ISS  product CLE7 (CLAVATA3/ESR-RELATED 7); protein binding / receptor binding  note CLAVATA3/ESR-RELATED 7 (CLE7); FUNCTIONS IN: protein binding, receptor binding; INVOLVED IN: signal transduction; LOCATED IN: apoplast; Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31082.1p  transcript_id AT2G31082.1  protein_id AT2G31082.1p  transcript_id AT2G31082.1  
At2g31083	chr2:013252304	0.0	W/13252304-13252549	AT2G31083.1  CDS  gene_syn CLAVATA3/ESR-RELATED 5, CLE5  gene CLE5  function Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.  go_component apoplast|GO:0048046|11457943|RCA  go_process signal transduction|GO:0007165||ISS  go_function receptor binding|GO:0005102||ISS  go_function protein binding|GO:0005515|11457943|ISS  product CLE5 (CLAVATA3/ESR-RELATED 5); protein binding / receptor binding  note CLAVATA3/ESR-RELATED 5 (CLE5); FUNCTIONS IN: protein binding, receptor binding; INVOLVED IN: signal transduction; LOCATED IN: apoplast; BEST Arabidopsis thaliana protein match is: CLE6 (CLAVATA3/ESR-RELATED 6); protein binding / receptor binding (TAIR:AT2G31085.1); Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31083.1p  transcript_id AT2G31083.1  protein_id AT2G31083.1p  transcript_id AT2G31083.1  
At2g31085	chr2:013254263	0.0	W/13254263-13254508	AT2G31085.1  CDS  gene_syn CLAVATA3/ESR-RELATED 6, CLE6  gene CLE6  function Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can replace CLV3 function in vivo.  go_component apoplast|GO:0048046|11457943|RCA  go_process signal transduction|GO:0007165||ISS  go_function receptor binding|GO:0005102||ISS  go_function protein binding|GO:0005515|11457943|ISS  product CLE6 (CLAVATA3/ESR-RELATED 6); protein binding / receptor binding  note CLAVATA3/ESR-RELATED 6 (CLE6); FUNCTIONS IN: protein binding, receptor binding; INVOLVED IN: signal transduction; LOCATED IN: apoplast; EXPRESSED IN: hypocotyl, root; BEST Arabidopsis thaliana protein match is: CLE5 (CLAVATA3/ESR-RELATED 5); protein binding / receptor binding (TAIR:AT2G31083.1); Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31085.1p  transcript_id AT2G31085.1  protein_id AT2G31085.1p  transcript_id AT2G31085.1  
At2g31090	chr2:013256282	0.0	W/13256282-13256385,13256472-13256595	AT2G31090.1  CDS  gene_syn T16B12.10, T16B12_10  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31090.1p  transcript_id AT2G31090.1  protein_id AT2G31090.1p  transcript_id AT2G31090.1  
At2g31100	chr2:013257939	0.0	C/13257939-13258174,13257471-13257828,13256738-13257388	AT2G31100.1  CDS  gene_syn T16B12.9, T16B12_9  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_component cellular_component|GO:0005575||ND  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product triacylglycerol lipase  note triacylglycerol lipase; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, sepal, flower, cultured cell; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: lipase class 3 family protein (TAIR:AT1G06250.1); Has 649 Blast hits to 599 proteins in 123 species: Archae - 0; Bacteria - 96; Metazoa - 6; Fungi - 126; Plants - 343; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT2G31100.1p  transcript_id AT2G31100.1  protein_id AT2G31100.1p  transcript_id AT2G31100.1  
At2g31110	chr2:013259440	0.0	C/13259440-13259463,13259151-13259326,13258894-13259052,13258522-13258813	AT2G31110.1  CDS  gene_syn T16B12.8, T16B12_8  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42570.1); Has 626 Blast hits to 624 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 626; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31110.1p  transcript_id AT2G31110.1  protein_id AT2G31110.1p  transcript_id AT2G31110.1  
At2g31110	chr2:013261776	0.0	C/13261776-13262071,13261160-13261331,13259151-13259326,13258894-13259052,13258522-13258813	AT2G31110.2  CDS  gene_syn T16B12.8, T16B12_8  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42570.1); Has 709 Blast hits to 697 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 709; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31110.2p  transcript_id AT2G31110.2  protein_id AT2G31110.2p  transcript_id AT2G31110.2  
At2g31130	chr2:013265448	0.0	C/13265448-13265534,13264536-13265355,13264117-13264295,13263829-13264002	AT2G31130.1  CDS  gene_syn T16B12.6, T16B12_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; Has 78 Blast hits to 77 proteins in 33 species: Archae - 0; Bacteria - 3; Metazoa - 17; Fungi - 2; Plants - 10; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT2G31130.1p  transcript_id AT2G31130.1  protein_id AT2G31130.1p  transcript_id AT2G31130.1  
At2g31140	chr2:013270088	0.0	W/13270088-13270159,13270639-13270811,13271066-13271249,13271346-13271452,13271538-13271619	AT2G31140.1  CDS  gene_syn T16B12.5, T16B12_5  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Peptidase S24, S26A and S26B, C-terminal (InterPro:IPR011056), Peptidase S24, S26A, S26B and S26C (InterPro:IPR015927), Peptidase S26A (InterPro:IPR014037); BEST Arabidopsis thaliana protein match is: serine-type peptidase (TAIR:AT1G06200.1); Has 126 Blast hits to 126 proteins in 37 species: Archae - 0; Bacteria - 8; Metazoa - 16; Fungi - 28; Plants - 68; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT2G31140.1p  transcript_id AT2G31140.1  protein_id AT2G31140.1p  transcript_id AT2G31140.1  
At2g31141	chr2:013271842	0.0	C/13271842-13271982	AT2G31141.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G31141.1p  transcript_id AT2G31141.1  protein_id AT2G31141.1p  transcript_id AT2G31141.1  
At2g31150	chr2:013273321	0.0	W/13273321-13273393,13273486-13273617,13273681-13274405	AT2G31150.1  CDS  gene_syn T16B12.4, T16B12_4  go_component membrane|GO:0016020||IEA  go_process ATP biosynthetic process|GO:0006754||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662||IEA  product ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism  note ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism, ATP binding; INVOLVED IN: ATP biosynthetic process; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757); BEST Arabidopsis thaliana protein match is: ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism (TAIR:AT1G06190.1); Has 4466 Blast hits to 2877 proteins in 255 species: Archae - 4; Bacteria - 258; Metazoa - 1784; Fungi - 244; Plants - 149; Viruses - 60; Other Eukaryotes - 1967 (source: NCBI BLink).  protein_id AT2G31150.1p  transcript_id AT2G31150.1  protein_id AT2G31150.1p  transcript_id AT2G31150.1  
At2g31160	chr2:013277903	0.0	W/13277903-13278562	AT2G31160.1  CDS  gene_syn LIGHT SENSITIVE HYPOCOTYLS 3, LSH3, T16B12.3, T16B12_3  gene LSH3  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product LSH3 (LIGHT SENSITIVE HYPOCOTYLS 3)  note LIGHT SENSITIVE HYPOCOTYLS 3 (LSH3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: LSH4 (LIGHT SENSITIVE HYPOCOTYLS 4) (TAIR:AT3G23290.2); Has 183 Blast hits to 183 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31160.1p  transcript_id AT2G31160.1  protein_id AT2G31160.1p  transcript_id AT2G31160.1  
At2g31170	chr2:013284173	0.0	C/13284173-13284256,13283919-13284089,13283552-13283833,13283348-13283473,13282974-13283177,13282559-13282897	AT2G31170.2  CDS  gene_syn SYCO ARATH, T16B12.16  gene SYCO ARATH  go_component chloroplast|GO:0009507|18431481|IDA  go_process translation|GO:0006412||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_process cysteinyl-tRNA aminoacylation|GO:0006423||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function cysteine-tRNA ligase activity|GO:0004817||IEA  go_function ATP binding|GO:0005524||IEA  go_component mitochondrion|GO:0005739|10824085|IDA  go_component mitochondrion|GO:0005739|16251277|IDA  go_component chloroplast|GO:0009507|10824085|IDA  go_component chloroplast|GO:0009507|16251277|IDA  go_process cysteinyl-tRNA aminoacylation|GO:0006423||ISS  go_function cysteine-tRNA ligase activity|GO:0004817||ISS  go_function ATP binding|GO:0005524||ISS  product SYCO ARATH; ATP binding / aminoacyl-tRNA ligase/ cysteine-tRNA ligase/ nucleotide binding  note SYCO ARATH; FUNCTIONS IN: cysteine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: cysteinyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cysteinyl-tRNA synthetase, class Ia (InterPro:IPR002308), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cysteinyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR015803), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Cysteinyl-tRNA synthetase, class Ia, C-terminal (InterPro:IPR015804); BEST Arabidopsis thaliana protein match is: tRNA synthetase class I (C) family protein (TAIR:AT5G38830.1); Has 7559 Blast hits to 7559 proteins in 1620 species: Archae - 161; Bacteria - 3299; Metazoa - 293; Fungi - 99; Plants - 71; Viruses - 3; Other Eukaryotes - 3633 (source: NCBI BLink).  protein_id AT2G31170.2p  transcript_id AT2G31170.2  protein_id AT2G31170.2p  transcript_id AT2G31170.2  
At2g31170	chr2:013285273	0.0	C/13285273-13285616,13285108-13285171,13284173-13284334,13283919-13284089,13283552-13283833,13283348-13283473,13282974-13283177,13282559-13282897	AT2G31170.1  CDS  gene_syn SYCO ARATH, T16B12.16  gene SYCO ARATH  go_component chloroplast|GO:0009507|18431481|IDA  go_process translation|GO:0006412||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_process cysteinyl-tRNA aminoacylation|GO:0006423||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function cysteine-tRNA ligase activity|GO:0004817||IEA  go_function ATP binding|GO:0005524||IEA  go_component mitochondrion|GO:0005739|10824085|IDA  go_component mitochondrion|GO:0005739|16251277|IDA  go_component chloroplast|GO:0009507|10824085|IDA  go_component chloroplast|GO:0009507|16251277|IDA  go_process cysteinyl-tRNA aminoacylation|GO:0006423||ISS  go_function cysteine-tRNA ligase activity|GO:0004817||ISS  go_function ATP binding|GO:0005524||ISS  product SYCO ARATH; ATP binding / aminoacyl-tRNA ligase/ cysteine-tRNA ligase/ nucleotide binding  note SYCO ARATH; FUNCTIONS IN: cysteine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: cysteinyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cysteinyl-tRNA synthetase, class Ia (InterPro:IPR002308), Cysteinyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR015803), Cysteinyl-tRNA synthetase, class Ia, C-terminal (InterPro:IPR015804), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080); BEST Arabidopsis thaliana protein match is: tRNA synthetase class I (C) family protein (TAIR:AT5G38830.1); Has 8663 Blast hits to 8413 proteins in 1630 species: Archae - 200; Bacteria - 3464; Metazoa - 434; Fungi - 181; Plants - 82; Viruses - 3; Other Eukaryotes - 4299 (source: NCBI BLink).  protein_id AT2G31170.1p  transcript_id AT2G31170.1  protein_id AT2G31170.1p  transcript_id AT2G31170.1  
At2g31180	chr2:013288043	0.0	C/13288043-13288175,13287813-13287942,13286806-13287292	AT2G31180.1  CDS  gene_syn ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, ATMYB14, F16D14.2, MYB DOMAIN PROTEIN 14, MYB14, MYB14AT  gene MYB14  function Member of the R2R3 factor gene family.  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product MYB14 (MYB DOMAIN PROTEIN 14); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 14 (MYB14); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 6 processes; EXPRESSED IN: sperm cell, hypocotyl, root; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: ATMYB13 (MYB DOMAIN PROTEIN 13); DNA binding / transcription factor (TAIR:AT1G06180.1); Has 6381 Blast hits to 5829 proteins in 351 species: Archae - 0; Bacteria - 0; Metazoa - 714; Fungi - 286; Plants - 3773; Viruses - 6; Other Eukaryotes - 1602 (source: NCBI BLink).  protein_id AT2G31180.1p  transcript_id AT2G31180.1  protein_id AT2G31180.1p  transcript_id AT2G31180.1  
At2g31190	chr2:013293670	0.0	C/13293670-13293681,13293441-13293575,13293267-13293355,13293081-13293165,13292900-13292959,13292716-13292809,13292536-13292633,13292193-13292372,13291974-13292096,13291458-13291883	AT2G31190.1  CDS  gene_syn F16D14.3, F16D14_3  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  product unknown protein  note LOCATED IN: mitochondrion, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF647 (InterPro:IPR006968); BEST Arabidopsis thaliana protein match is: emb1879 (embryo defective 1879) (TAIR:AT5G49820.1); Has 274 Blast hits to 274 proteins in 92 species: Archae - 0; Bacteria - 2; Metazoa - 96; Fungi - 41; Plants - 94; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT2G31190.1p  transcript_id AT2G31190.1  protein_id AT2G31190.1p  transcript_id AT2G31190.1  
At2g31200	chr2:013294171	0.0	W/13294171-13294194,13294443-13294708,13294798-13294948	AT2G31200.1  CDS  gene_syn ACTIN DEPOLYMERIZING FACTOR 6, ADF6, ATADF6, F16D14.4, F16D14_4  gene ADF6  function Encodes actin depolymerizing factor 6 (ADF6).  go_component intracellular|GO:0005622||IEA  go_function actin binding|GO:0003779||IEA  go_component intracellular|GO:0005622||ISS  go_process biological_process|GO:0008150||ND  product ADF6 (ACTIN DEPOLYMERIZING FACTOR 6); actin binding  note ACTIN DEPOLYMERIZING FACTOR 6 (ADF6); FUNCTIONS IN: actin binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding, cofilin/tropomyosin type (InterPro:IPR002108); BEST Arabidopsis thaliana protein match is: ADF1 (ACTIN DEPOLYMERIZING FACTOR 1); actin binding (TAIR:AT3G46010.2); Has 1036 Blast hits to 1032 proteins in 204 species: Archae - 0; Bacteria - 0; Metazoa - 482; Fungi - 111; Plants - 307; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).  protein_id AT2G31200.1p  transcript_id AT2G31200.1  protein_id AT2G31200.1p  transcript_id AT2G31200.1  
At2g31210	chr2:013296655	0.0	W/13296655-13297380,13297476-13297934,13298038-13298139	AT2G31210.1  CDS  gene_syn F16D14.5, F16D14_5  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT2G31220.1); Has 1126 Blast hits to 1114 proteins in 109 species: Archae - 2; Bacteria - 0; Metazoa - 13; Fungi - 10; Plants - 895; Viruses - 5; Other Eukaryotes - 201 (source: NCBI BLink).  protein_id AT2G31210.1p  transcript_id AT2G31210.1  protein_id AT2G31210.1p  transcript_id AT2G31210.1  
At2g31215	chr2:013299807	0.0	W/13299807-13299959,13300066-13300302	AT2G31215.1  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT2G31210.1); Has 408 Blast hits to 408 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 408; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31215.1p  transcript_id AT2G31215.1  protein_id AT2G31215.1p  transcript_id AT2G31215.1  
At2g31218	chr2:013302039	0.0	C/13302039-13302170	AT2G31218.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G31218.1p  transcript_id AT2G31218.1  protein_id AT2G31218.1p  transcript_id AT2G31218.1  
At2g31220	chr2:013303014	0.0	W/13303014-13303020,13303116-13303933,13304028-13304477,13304560-13304661	AT2G31220.1  CDS  gene_syn F16D14.6, F16D14_6  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT1G06170.2); Has 1039 Blast hits to 1039 proteins in 103 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 23; Plants - 990; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT2G31220.1p  transcript_id AT2G31220.1  protein_id AT2G31220.1p  transcript_id AT2G31220.1  
At2g31230	chr2:013306676	0.0	C/13306676-13307407	AT2G31230.1  CDS  gene_syn ATERF15, Ethylene-responsive element binding factor 15, F16D14.7, F16D14_7  gene ATERF15  function encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.  go_component chloroplast|GO:0009507|15028209|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|10715325|TAS  go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS  go_process response to chitin|GO:0010200|17722694|IEP  go_function DNA binding|GO:0003677|10715325|TAS  go_function transcription factor activity|GO:0003700|10715325|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9687012|TAS  go_function transcription activator activity|GO:0016563|10715325|TAS  product ATERF15 (Ethylene-responsive element binding factor 15); DNA binding / transcription activator/ transcription factor  note Ethylene-responsive element binding factor 15 (ATERF15); FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: ethylene mediated signaling pathway, response to chitin, regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59); DNA binding / transcription activator/ transcription factor (TAIR:AT1G06160.1); Has 5353 Blast hits to 4433 proteins in 305 species: Archae - 0; Bacteria - 154; Metazoa - 774; Fungi - 109; Plants - 3708; Viruses - 10; Other Eukaryotes - 598 (source: NCBI BLink).  protein_id AT2G31230.1p  transcript_id AT2G31230.1  protein_id AT2G31230.1p  transcript_id AT2G31230.1  
At2g31240	chr2:013317858	0.0	C/13317858-13319518,13317570-13317762	AT2G31240.1  CDS  gene_syn F16D14.8, F16D14_8  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product tetratricopeptide repeat (TPR)-containing protein  note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: kinesin light chain-related (TAIR:AT4G10840.1); Has 7827 Blast hits to 3902 proteins in 455 species: Archae - 152; Bacteria - 2169; Metazoa - 4146; Fungi - 357; Plants - 181; Viruses - 6; Other Eukaryotes - 816 (source: NCBI BLink).  protein_id AT2G31240.1p  transcript_id AT2G31240.1  protein_id AT2G31240.1p  transcript_id AT2G31240.1  
At2g31250	chr2:013321304	0.0	C/13321304-13321526,13320901-13321142,13319702-13320811	AT2G31250.1  CDS  gene_syn F16D14.9, F16D14_9, HEMA3  gene HEMA3  go_component cytoplasm|GO:0005737||IEA  go_component chloroplast|GO:0009507||IEA  go_function catalytic activity|GO:0003824||IEA  go_function shikimate 5-dehydrogenase activity|GO:0004764||IEA  go_function binding|GO:0005488||IEA  go_function glutamyl-tRNA reductase activity|GO:0008883||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_component chloroplast|GO:0009507||ISS  go_process porphyrin biosynthetic process|GO:0006779|8605295|TAS  go_function glutamyl-tRNA reductase activity|GO:0008883||ISS  product HEMA3; NADP or NADPH binding / binding / catalytic/ glutamyl-tRNA reductase/ shikimate 5-dehydrogenase  note HEMA3; FUNCTIONS IN: glutamyl-tRNA reductase activity, NADP or NADPH binding, binding, shikimate 5-dehydrogenase activity, catalytic activity; INVOLVED IN: porphyrin biosynthetic process; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: flower, pollen tube; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase (InterPro:IPR006151), Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, conserved site (InterPro:IPR018214), Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, C-terminal (InterPro:IPR015896), NAD(P)-binding (InterPro:IPR016040), Tetrapyrrole biosynthesis, glutamyl-tRNA reductase (InterPro:IPR000343), Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal (InterPro:IPR015895); BEST Arabidopsis thaliana protein match is: HEMA2; glutamyl-tRNA reductase (TAIR:AT1G09940.1); Has 3307 Blast hits to 3307 proteins in 1024 species: Archae - 154; Bacteria - 2053; Metazoa - 0; Fungi - 0; Plants - 190; Viruses - 0; Other Eukaryotes - 910 (source: NCBI BLink).  protein_id AT2G31250.1p  transcript_id AT2G31250.1  protein_id AT2G31250.1p  transcript_id AT2G31250.1  
At2g31260	chr2:013325713	0.0	C/13325713-13326293,13325291-13325611,13324646-13324868,13324319-13324498,13324033-13324239,13323587-13323664,13323422-13323492,13323213-13323326,13322291-13323116	AT2G31260.1  CDS  gene_syn APG9, ATAPG9, F16D14.10, F16D14_10, autophagy 9  gene APG9  function Involved in autophagy, the process of vacuolar bulk degradation of cytoplasmic components. Mutant shows accelerated bolting and senescence.  go_process autophagy|GO:0006914|12114572|IMP  go_process autophagy|GO:0006914|12114572|ISS  product APG9 (autophagy 9)  note autophagy 9 (APG9); INVOLVED IN: autophagy; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy protein 9 (InterPro:IPR007241); Has 380 Blast hits to 375 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 195; Fungi - 115; Plants - 31; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT2G31260.1p  transcript_id AT2G31260.1  protein_id AT2G31260.1p  transcript_id AT2G31260.1  
At2g31270	chr2:013329037	0.0	W/13329037-13329377,13329457-13329576,13329905-13330139,13330224-13330865,13330992-13331193,13331288-13331378,13331460-13331544	AT2G31270.1  CDS  gene_syn ARABIDOPSIS HOMOLOG OF YEAST CDT1, ARABIDOPSIS HOMOLOG OF YEAST CDT1 A, ATCDT1A, CDT1, CDT1A, F16D14.11, F16D14_11  gene CDT1A  function Encodes a cyclin-dependent protein kinase. Involved in nuclear DNA replication and plastid division. Located in nucleus and chloroplast.  go_component nucleus|GO:0005634|15928083|IDA  go_component chloroplast|GO:0009507|15928083|IDA  go_process DNA replication|GO:0006260|15928083|IMP  go_process chloroplast organization|GO:0009658|15928083|IMP  go_function cyclin-dependent protein kinase activity|GO:0004693|15358564|ISS  go_function protein binding|GO:0005515|15928083|IPI  product CDT1A (ARABIDOPSIS HOMOLOG OF YEAST CDT1 A); cyclin-dependent protein kinase/ protein binding  note ARABIDOPSIS HOMOLOG OF YEAST CDT1 A (CDT1A); FUNCTIONS IN: protein binding, cyclin-dependent protein kinase activity; INVOLVED IN: chloroplast organization, DNA replication; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA replication factor CDT1-like (InterPro:IPR014939); BEST Arabidopsis thaliana protein match is: CDT1B (ARABIDOPSIS HOMOLOG OF YEAST CDT1 BARABIDOPSIS HOMOLOG OF YEAST CDT1 B); cyclin-dependent protein kinase (TAIR:AT3G54710.1); Has 1175 Blast hits to 948 proteins in 175 species: Archae - 6; Bacteria - 70; Metazoa - 585; Fungi - 151; Plants - 85; Viruses - 42; Other Eukaryotes - 236 (source: NCBI BLink).  protein_id AT2G31270.1p  transcript_id AT2G31270.1  protein_id AT2G31270.1p  transcript_id AT2G31270.1  
At2g31271	chr2:013332224	0.0	C/13332224-13332391	AT2G31271.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G31271.1p  transcript_id AT2G31271.1  protein_id AT2G31271.1p  transcript_id AT2G31271.1  
At2g31280	chr2:013339430	0.0	W/13339430-13339526,13339697-13339775,13340073-13340192,13340385-13340466,13340706-13340765,13341176-13342381,13342488-13342589,13342845-13342964,13343004-13343309	AT2G31280.2  CDS  gene_syn CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 7, CPUORF7, F16D14.12, F16D14_12  gene CPUORF7  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) protein-related  note CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 7 (CPUORF7); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT1G06150.1); Has 197 Blast hits to 169 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 194; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31280.2p  transcript_id AT2G31280.2  protein_id AT2G31280.2p  transcript_id AT2G31280.2  
At2g31280	chr2:013339430	0.0	W/13339430-13339534	AT2G31280.4  CDS  gene_syn CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 7, CPUORF7, F16D14.12, F16D14_12  gene CPUORF7  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) protein-related  note CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 7 (CPUORF7); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; BEST Arabidopsis thaliana protein match is: CPuORF8 (Conserved peptide upstream open reading frame 8) (TAIR:AT1G06149.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31280.4p  transcript_id AT2G31280.4  protein_id AT2G31280.4p  transcript_id AT2G31280.4  
At2g31280	chr2:013339678	0.0	W/13339678-13339775,13340073-13340192,13340385-13340466,13340541-13340582,13340706-13340765,13340896-13341015,13341176-13342381,13342488-13342589,13342845-13342964,13343076-13343201,13343338-13343424	AT2G31280.1  CDS  gene_syn CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 7, CPUORF7, F16D14.12, F16D14_12  gene CPUORF7  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) protein-related  note CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 7 (CPUORF7); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT1G06150.1); Has 224 Blast hits to 189 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 221; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31280.1p  transcript_id AT2G31280.1  protein_id AT2G31280.1p  transcript_id AT2G31280.1  
At2g31280	chr2:013339678	0.0	W/13339678-13339775,13340073-13340192,13340385-13340466,13340541-13340582,13340706-13340765,13340896-13341015,13341176-13342381,13342488-13342589,13342845-13342964,13343076-13343252,13343338-13343424	AT2G31280.3  CDS  gene_syn CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 7, CPUORF7, F16D14.12, F16D14_12  gene CPUORF7  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) protein-related  note CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 7 (CPUORF7); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT1G06150.1); Has 223 Blast hits to 188 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 220; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31280.3p  transcript_id AT2G31280.3  protein_id AT2G31280.3p  transcript_id AT2G31280.3  
At2g31290	chr2:013344151	0.0	W/13344151-13345398	AT2G31290.1  CDS  gene_syn F16D14.13, F16D14_13  go_component intracellular|GO:0005622||IEA  go_component mitochondrion|GO:0005739||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  product ubiquitin thiolesterase  note ubiquitin thiolesterase; FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: mitochondrion, intracellular; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (InterPro:IPR001578); BEST Arabidopsis thaliana protein match is: ubiquitin thiolesterase (TAIR:AT3G63090.1); Has 215 Blast hits to 215 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31290.1p  transcript_id AT2G31290.1  protein_id AT2G31290.1p  transcript_id AT2G31290.1  
At2g31290	chr2:013344151	0.0	W/13344151-13345398	AT2G31290.2  CDS  gene_syn F16D14.13, F16D14_13  go_component intracellular|GO:0005622||IEA  go_component mitochondrion|GO:0005739||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  product ubiquitin thiolesterase  note ubiquitin thiolesterase; FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: mitochondrion, intracellular; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (InterPro:IPR001578); BEST Arabidopsis thaliana protein match is: ubiquitin thiolesterase (TAIR:AT3G63090.1); Has 215 Blast hits to 215 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31290.2p  transcript_id AT2G31290.2  protein_id AT2G31290.2p  transcript_id AT2G31290.2  
At2g31300	chr2:013349718	0.0	C/13349718-13349787,13349263-13349351,13348991-13349067,13348793-13348887,13348607-13348676,13348279-13348348,13347970-13348043,13347840-13347882,13347629-13347710,13347410-13347498,13347227-13347312,13346994-13347057,13346660-13346760,13346488-13346546,13346313-13346380	AT2G31300.1  CDS  gene_syn ACTIN-RELATED PROTEIN C1, ACTIN-RELATED PROTEIN C1B, ARPC1, ARPC1B, F16D14.14, F16D14_14  gene ARPC1B  function putative ARP2/3 protein complex subunit p41  go_function actin binding|GO:0003779||IEA  go_component nucleus|GO:0005634|15469496|IDA  go_component cytoplasm|GO:0005737|15469496|IDA  go_component Arp2/3 protein complex|GO:0005885|15653407|TAS  go_process actin filament organization|GO:0007015|10572033|TAS  go_function nucleotide binding|GO:0000166||ISS  product ARPC1B (ACTIN-RELATED PROTEIN C1B); actin binding / nucleotide binding  note ACTIN-RELATED PROTEIN C1B (ARPC1B); FUNCTIONS IN: actin binding, nucleotide binding; INVOLVED IN: actin filament organization; LOCATED IN: Arp2/3 protein complex, nucleus, cytoplasm; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Actin-related protein 2/3 complex, subunit 1 (InterPro:IPR017383), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: ARPC1A (ACTIN-RELATED PROTEIN C1A); actin binding / nucleotide binding (TAIR:AT2G30910.1); Has 2892 Blast hits to 2165 proteins in 213 species: Archae - 4; Bacteria - 566; Metazoa - 1213; Fungi - 540; Plants - 189; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink).  protein_id AT2G31300.1p  transcript_id AT2G31300.1  protein_id AT2G31300.1p  transcript_id AT2G31300.1  
At2g31305	chr2:013350909	0.0	W/13350909-13351232	AT2G31305.1  CDS  gene_syn INH3, INHIBITOR-3  gene INH3  function Encodes inhibitor-3 (Inh3), a regulatory subunit of protein phosphatase 1 (PP1). Inh3 inhibits the phosphatase activity of the PP1 catalytic subunit (PP1c). Biochemical analyses demonstrate that Inh3 binds to PP1c via the RVxF motif of Inh3, a consensus PP1c-binding sequence both in vitro and in vivo.  go_component protein phosphatase type 1 complex|GO:0000164|19329567|IDA  go_process embryonic development|GO:0009790|19329567|IMP  go_process negative regulation of phosphoprotein phosphatase activity|GO:0032515|19329567|IDA  go_function molecular_function|GO:0003674||ND  product INH3 (INHIBITOR-3)  note INHIBITOR-3 (INH3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: negative regulation of phosphoprotein phosphatase activity, embryonic development; LOCATED IN: protein phosphatase type 1 complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase inhibitor (InterPro:IPR011107); Has 295 Blast hits to 295 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 150; Fungi - 97; Plants - 22; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT2G31305.1p  transcript_id AT2G31305.1  protein_id AT2G31305.1p  transcript_id AT2G31305.1  
At2g31310	chr2:013352985	0.0	W/13352985-13353263,13353366-13353653	AT2G31310.1  CDS  gene_syn F16D14.15, F16D14_15, LBD14, LOB DOMAIN-CONTAINING PROTEIN 14  gene LBD14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product LBD14 (LOB DOMAIN-CONTAINING PROTEIN 14)  note LOB DOMAIN-CONTAINING PROTEIN 14 (LBD14); INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD29 (LATERAL ORGAN BOUNDARIES-DOMAIN 29) (TAIR:AT3G58190.1); Has 579 Blast hits to 577 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 579; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31310.1p  transcript_id AT2G31310.1  protein_id AT2G31310.1p  transcript_id AT2G31310.1  
At2g31320	chr2:013359435	0.0	C/13359435-13359578,13358636-13358685,13358339-13358555,13358055-13358241,13357661-13357943,13357316-13357511,13357055-13357216,13356922-13356982,13356776-13356839,13356200-13356683,13356003-13356115,13355843-13355919,13355579-13355739,13355294-13355485,13355102-13355210,13354883-13354965,13354635-13354772,13354323-13354505,13354046-13354093	AT2G31320.1  CDS  gene_syn ATPARP2, F16D14.16, F16D14_16, PARP2, POLY(ADP-RIBOSE) POLYMERASE 2  gene PARP2  function Abiotic Stress-inducible gene.  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||IEA  go_function DNA binding|GO:0003677||IEA  go_function NAD+ ADP-ribosyltransferase activity|GO:0003950||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_component nucleus|GO:0005634||ISS  go_process DNA repair|GO:0006281|11523787|IEP  go_process protein amino acid ADP-ribosylation|GO:0006471||ISS  go_process response to oxidative stress|GO:0006979|17823244|IEP  go_process response to abiotic stimulus|GO:0009628|17823244|IMP  go_process response to abscisic acid stimulus|GO:0009737|17823244|IEP  go_function DNA binding|GO:0003677||ISS  go_function NAD+ ADP-ribosyltransferase activity|GO:0003950||ISS  product PARP2 (POLY(ADP-RIBOSE) POLYMERASE 2); DNA binding / NAD or NADH binding / NAD+ ADP-ribosyltransferase/ zinc ion binding  note POLY(ADP-RIBOSE) POLYMERASE 2 (PARP2); FUNCTIONS IN: NAD+ ADP-ribosyltransferase activity, NAD or NADH binding, DNA binding, zinc ion binding; INVOLVED IN: response to oxidative stress, DNA repair, response to abscisic acid stimulus, response to abiotic stimulus, protein amino acid ADP-ribosylation; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: PADR1 (InterPro:IPR012982), Zinc finger, PARP-type (InterPro:IPR001510), WGR (InterPro:IPR008893), Poly(ADP-ribose) polymerase, regulatory region (InterPro:IPR004102), NAD+ ADP-ribosyltransferase (InterPro:IPR008288), Poly(ADP-ribose) polymerase, catalytic region (InterPro:IPR012317), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: NAD+ ADP-ribosyltransferase (TAIR:AT5G22470.1); Has 983 Blast hits to 801 proteins in 118 species: Archae - 0; Bacteria - 8; Metazoa - 666; Fungi - 55; Plants - 95; Viruses - 2; Other Eukaryotes - 157 (source: NCBI BLink).  protein_id AT2G31320.1p  transcript_id AT2G31320.1  protein_id AT2G31320.1p  transcript_id AT2G31320.1  
At2g31335	chr2:013360985	0.0	W/13360985-13361167	AT2G31335.1  CDS  product unknown protein  note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06137.1); Has 10 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31335.1p  transcript_id AT2G31335.1  protein_id AT2G31335.1p  transcript_id AT2G31335.1  
At2g31340	chr2:013361614	0.0	W/13361614-13361755,13361843-13362471,13362607-13362767,13363043-13363103,13363297-13363362,13363550-13363635,13363737-13363800,13363879-13364091,13364212-13364277,13364359-13364438,13364522-13364633	AT2G31340.1  CDS  gene_syn T28P16.17, T28P16_17, emb1381, embryo defective 1381  gene emb1381  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product emb1381 (embryo defective 1381)  note embryo defective 1381 (emb1381); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 13 Blast hits to 13 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31340.1p  transcript_id AT2G31340.1  protein_id AT2G31340.1p  transcript_id AT2G31340.1  
At2g31345	chr2:013365496	0.0	C/13365496-13365708	AT2G31345.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06135.1); Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31345.1p  transcript_id AT2G31345.1  protein_id AT2G31345.1p  transcript_id AT2G31345.1  
At2g31350	chr2:013368451	0.0	W/13368451-13368504,13368774-13368944,13369075-13369278,13369375-13369498,13370094-13370194,13370306-13370380,13370472-13370570,13370656-13370802	AT2G31350.1  CDS  gene_syn GLX2-5, GLYOXALASE 2-5, T28P16.16, T28P16_16  gene GLX2-5  function Encodes a mitochondrial glyoxalase 2 that can accommodate a number of different metal centers and with the predominant metal center being Fe(III)Zn(II).  go_component mitochondrion|GO:0005739|16227621|NAS  go_process methylglyoxal catabolic process to D-lactate|GO:0019243||ISS  go_function hydroxyacylglutathione hydrolase activity|GO:0004416|16227621|IDA  go_function hydroxyacylglutathione hydrolase activity|GO:0004416||ISS  go_function iron ion binding|GO:0005506|16227621|IDA  go_function zinc ion binding|GO:0008270|16227621|IDA  product GLX2-5 (GLYOXALASE 2-5); hydroxyacylglutathione hydrolase/ iron ion binding / zinc ion binding  note GLYOXALASE 2-5 (GLX2-5); FUNCTIONS IN: iron ion binding, zinc ion binding, hydroxyacylglutathione hydrolase activity; INVOLVED IN: methylglyoxal catabolic process to D-lactate; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279), Hydroxyacylglutathione hydrolase (InterPro:IPR017782); BEST Arabidopsis thaliana protein match is: GLX2-4 (glyoxalase 2-4); hydrolase/ hydroxyacylglutathione hydrolase/ zinc ion binding (TAIR:AT1G06130.1); Has 10781 Blast hits to 10780 proteins in 1426 species: Archae - 236; Bacteria - 5677; Metazoa - 440; Fungi - 203; Plants - 133; Viruses - 0; Other Eukaryotes - 4092 (source: NCBI BLink).  protein_id AT2G31350.1p  transcript_id AT2G31350.1  protein_id AT2G31350.1p  transcript_id AT2G31350.1  
At2g31350	chr2:013368451	0.0	W/13368451-13368504,13368777-13368944,13369075-13369278,13369375-13369498,13370094-13370194,13370306-13370380,13370472-13370570,13370656-13370802	AT2G31350.2  CDS  gene_syn GLX2-5, GLYOXALASE 2-5, T28P16.16, T28P16_16  gene GLX2-5  function Encodes a mitochondrial glyoxalase 2 that can accommodate a number of different metal centers and with the predominant metal center being Fe(III)Zn(II).  go_component mitochondrion|GO:0005739|16227621|NAS  go_process methylglyoxal catabolic process to D-lactate|GO:0019243||ISS  go_function hydroxyacylglutathione hydrolase activity|GO:0004416|16227621|IDA  go_function hydroxyacylglutathione hydrolase activity|GO:0004416||ISS  go_function iron ion binding|GO:0005506|16227621|IDA  go_function zinc ion binding|GO:0008270|16227621|IDA  product GLX2-5 (GLYOXALASE 2-5); hydroxyacylglutathione hydrolase/ iron ion binding / zinc ion binding  note GLYOXALASE 2-5 (GLX2-5); FUNCTIONS IN: iron ion binding, zinc ion binding, hydroxyacylglutathione hydrolase activity; INVOLVED IN: methylglyoxal catabolic process to D-lactate; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279), Hydroxyacylglutathione hydrolase (InterPro:IPR017782); BEST Arabidopsis thaliana protein match is: GLX2-4 (glyoxalase 2-4); hydrolase/ hydroxyacylglutathione hydrolase/ zinc ion binding (TAIR:AT1G06130.2); Has 10780 Blast hits to 10779 proteins in 1426 species: Archae - 236; Bacteria - 5677; Metazoa - 440; Fungi - 203; Plants - 133; Viruses - 0; Other Eukaryotes - 4091 (source: NCBI BLink).  protein_id AT2G31350.2p  transcript_id AT2G31350.2  protein_id AT2G31350.2p  transcript_id AT2G31350.2  
At2g31360	chr2:013373211	0.0	C/13373211-13373546,13372941-13373081,13372709-13372849,13372500-13372606,13372121-13372319	AT2G31360.1  CDS  gene_syn 16:0Delta9 Arabidopsis desaturase 2, ADS2, DELTA 9 DESATURASE, T28P16.15, T28P16_15  gene ADS2  function homologous to delta 9 acyl-lipid desaturases of cyanobacteria and acyl-CoA desaturases of yeast and mammals. expression up-regulated by cold temperature.  go_process lipid metabolic process|GO:0006629||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product ADS2 (16:0Delta9 Arabidopsis desaturase 2); oxidoreductase  note 16:0Delta9 Arabidopsis desaturase 2 (ADS2); FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: lipid metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1, core (InterPro:IPR015876), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: ADS1 (DELTA 9 DESATURASE 1); oxidoreductase (TAIR:AT1G06080.1); Has 2720 Blast hits to 2720 proteins in 595 species: Archae - 0; Bacteria - 1082; Metazoa - 692; Fungi - 150; Plants - 71; Viruses - 3; Other Eukaryotes - 722 (source: NCBI BLink).  protein_id AT2G31360.1p  transcript_id AT2G31360.1  protein_id AT2G31360.1p  transcript_id AT2G31360.1  
At2g31370	chr2:013379448	0.0	W/13379448-13380067,13380270-13380402,13380537-13380621,13380714-13380927,13380956-13381037	AT2G31370.5  CDS  gene_syn T28P16.14, T28P16_14  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|1844885|IDA  go_function DNA binding|GO:0003677|1844885|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700|1844885|ISS  product bZIP transcription factor (POSF21)  note bZIP transcription factor (POSF21); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: bZIP transcription factor, putative (bZIP69) (TAIR:AT1G06070.1); Has 1993 Blast hits to 1930 proteins in 186 species: Archae - 2; Bacteria - 30; Metazoa - 559; Fungi - 87; Plants - 715; Viruses - 0; Other Eukaryotes - 600 (source: NCBI BLink).  protein_id AT2G31370.5p  transcript_id AT2G31370.5  protein_id AT2G31370.5p  transcript_id AT2G31370.5  
At2g31370	chr2:013379448	0.0	W/13379448-13380067,13380270-13380402,13380537-13380621,13380714-13381072	AT2G31370.1  CDS  gene_syn T28P16.14, T28P16_14  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|1844885|IDA  go_function DNA binding|GO:0003677|1844885|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700|1844885|ISS  product bZIP transcription factor (POSF21)  note bZIP transcription factor (POSF21); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: bZIP transcription factor, putative (bZIP69) (TAIR:AT1G06070.1); Has 54269 Blast hits to 19856 proteins in 831 species: Archae - 14; Bacteria - 2070; Metazoa - 21047; Fungi - 5854; Plants - 2899; Viruses - 481; Other Eukaryotes - 21904 (source: NCBI BLink).  protein_id AT2G31370.1p  transcript_id AT2G31370.1  protein_id AT2G31370.1p  transcript_id AT2G31370.1  
At2g31370	chr2:013379448	0.0	W/13379448-13380067,13380270-13380402,13380537-13380621,13380714-13381072	AT2G31370.2  CDS  gene_syn T28P16.14, T28P16_14  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|1844885|IDA  go_function DNA binding|GO:0003677|1844885|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700|1844885|ISS  product bZIP transcription factor (POSF21)  note bZIP transcription factor (POSF21); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: bZIP transcription factor, putative (bZIP69) (TAIR:AT1G06070.1); Has 54269 Blast hits to 19856 proteins in 831 species: Archae - 14; Bacteria - 2070; Metazoa - 21047; Fungi - 5854; Plants - 2899; Viruses - 481; Other Eukaryotes - 21904 (source: NCBI BLink).  protein_id AT2G31370.2p  transcript_id AT2G31370.2  protein_id AT2G31370.2p  transcript_id AT2G31370.2  
At2g31370	chr2:013379448	0.0	W/13379448-13380067,13380270-13380402,13380537-13380621,13380714-13381072	AT2G31370.3  CDS  gene_syn T28P16.14, T28P16_14  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|1844885|IDA  go_function DNA binding|GO:0003677|1844885|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700|1844885|ISS  product bZIP transcription factor (POSF21)  note bZIP transcription factor (POSF21); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: bZIP transcription factor, putative (bZIP69) (TAIR:AT1G06070.1); Has 54269 Blast hits to 19856 proteins in 831 species: Archae - 14; Bacteria - 2070; Metazoa - 21047; Fungi - 5854; Plants - 2899; Viruses - 481; Other Eukaryotes - 21904 (source: NCBI BLink).  protein_id AT2G31370.3p  transcript_id AT2G31370.3  protein_id AT2G31370.3p  transcript_id AT2G31370.3  
At2g31370	chr2:013379448	0.0	W/13379448-13380067,13380270-13380402,13380537-13380621,13380714-13381072	AT2G31370.4  CDS  gene_syn T28P16.14, T28P16_14  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|1844885|IDA  go_function DNA binding|GO:0003677|1844885|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700|1844885|ISS  product bZIP transcription factor (POSF21)  note bZIP transcription factor (POSF21); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: bZIP transcription factor, putative (bZIP69) (TAIR:AT1G06070.1); Has 54269 Blast hits to 19856 proteins in 831 species: Archae - 14; Bacteria - 2070; Metazoa - 21047; Fungi - 5854; Plants - 2899; Viruses - 481; Other Eukaryotes - 21904 (source: NCBI BLink).  protein_id AT2G31370.4p  transcript_id AT2G31370.4  protein_id AT2G31370.4p  transcript_id AT2G31370.4  
At2g31380	chr2:013382150	0.0	W/13382150-13382332,13382678-13382971,13383063-13383302	AT2G31380.1  CDS  gene_syn STH, STO HOMOLOG, T28P16.13, T28P16_13  gene STH  function a B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction.  go_component intracellular|GO:0005622||IEA  go_component endomembrane system|GO:0012505||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  go_function protein domain specific binding|GO:0019904||NAS  product STH; protein domain specific binding / transcription factor/ zinc ion binding  note STH; FUNCTIONS IN: transcription factor activity, zinc ion binding, protein domain specific binding; INVOLVED IN: regulation of transcription; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: STO (SALT TOLERANCE); DNA binding / protein binding / transcription factor/ zinc ion binding (TAIR:AT1G06040.1); Has 1203 Blast hits to 894 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 2; Plants - 1119; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT2G31380.1p  transcript_id AT2G31380.1  protein_id AT2G31380.1p  transcript_id AT2G31380.1  
At2g31390	chr2:013385718	0.0	C/13385718-13386116,13384583-13384915,13383891-13384007,13383635-13383763	AT2G31390.1  CDS  gene_syn T28P16.12, T28P16_12  go_component plasma membrane|GO:0005886|17644812|IDA  go_process sucrose biosynthetic process|GO:0005986||IEA  go_process D-ribose metabolic process|GO:0006014||IEA  go_process sucrose catabolic process, using beta-fructofuranosidase|GO:0019575||IEA  go_process acetate fermentation|GO:0019654||IEA  go_function ribokinase activity|GO:0004747||IEA  go_function kinase activity|GO:0016301||ISS  product pfkB-type carbohydrate kinase family protein  note pfkB-type carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process, acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase; LOCATED IN: plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-type carbohydrate kinase family protein (TAIR:AT1G06030.1); Has 11369 Blast hits to 11367 proteins in 1293 species: Archae - 210; Bacteria - 7387; Metazoa - 113; Fungi - 85; Plants - 253; Viruses - 0; Other Eukaryotes - 3321 (source: NCBI BLink).  protein_id AT2G31390.1p  transcript_id AT2G31390.1  protein_id AT2G31390.1p  transcript_id AT2G31390.1  
At2g31400	chr2:013388494	0.0	C/13388494-13390550,13388123-13388339,13387839-13388023,13387201-13387498	AT2G31400.1  CDS  gene_syn T28P16.11, T28P16_11  go_component chloroplast|GO:0009507||IEA  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: PTAC2 (PLASTID TRANSCRIPTIONALLY ACTIVE2) (TAIR:AT1G74850.1); Has 27923 Blast hits to 6532 proteins in 202 species: Archae - 5; Bacteria - 38; Metazoa - 1230; Fungi - 583; Plants - 23287; Viruses - 0; Other Eukaryotes - 2780 (source: NCBI BLink).  protein_id AT2G31400.1p  transcript_id AT2G31400.1  protein_id AT2G31400.1p  transcript_id AT2G31400.1  
At2g31410	chr2:013392220	0.0	C/13392220-13392819	AT2G31410.1  CDS  gene_syn T28P16.10, T28P16_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1826 Blast hits to 1084 proteins in 146 species: Archae - 5; Bacteria - 17; Metazoa - 730; Fungi - 159; Plants - 161; Viruses - 1; Other Eukaryotes - 753 (source: NCBI BLink).  protein_id AT2G31410.1p  transcript_id AT2G31410.1  protein_id AT2G31410.1p  transcript_id AT2G31410.1  
At2g31420	chr2:013393364	0.0	C/13393364-13393993	AT2G31420.1  CDS  gene_syn T28P16.9, T28P16_9  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508), Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G27410.1); Has 58 Blast hits to 58 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31420.1p  transcript_id AT2G31420.1  protein_id AT2G31420.1p  transcript_id AT2G31420.1  
At2g31425	chr2:013394756	0.0	W/13394756-13394965,13395230-13395577	AT2G31425.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  product enzyme inhibitor/ pectinesterase  note enzyme inhibitor/ pectinesterase; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: enzyme inhibitor/ pectinesterase (TAIR:AT2G31432.1); Has 20 Blast hits to 20 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G31425.1p  transcript_id AT2G31425.1  protein_id AT2G31425.1p  transcript_id AT2G31425.1  
At2g31430	chr2:013396293	0.0	W/13396293-13396493,13396573-13396911	AT2G31430.1  CDS  gene_syn T28P16.8, T28P16_8  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: enzyme inhibitor/ pectinesterase (TAIR:AT2G31425.1); Has 15 Blast hits to 15 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31430.1p  transcript_id AT2G31430.1  protein_id AT2G31430.1p  transcript_id AT2G31430.1  
At2g31432	chr2:013397597	0.0	W/13397597-13397722,13398477-13398839	AT2G31432.1  CDS  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product enzyme inhibitor/ pectinesterase  note enzyme inhibitor/ pectinesterase; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: enzyme inhibitor/ pectinesterase (TAIR:AT2G31425.1); Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31432.1p  transcript_id AT2G31432.1  protein_id AT2G31432.1p  transcript_id AT2G31432.1  
At2g31440	chr2:013400859	0.0	C/13400859-13400971,13400520-13400675,13400302-13400387,13399819-13399944,13399558-13399685,13399309-13399452	AT2G31440.1  CDS  gene_syn T28P16.7, T28P16_7  go_component integral to membrane|GO:0016021||IEA  go_process protein processing|GO:0016485||IEA  go_process positive regulation of catalytic activity|GO:0043085||IEA  go_function protein binding|GO:0005515||IEA  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: positive regulation of catalytic activity, protein processing; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aph-1 (InterPro:IPR009294); Has 215 Blast hits to 211 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 186; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT2G31440.1p  transcript_id AT2G31440.1  protein_id AT2G31440.1p  transcript_id AT2G31440.1  
At2g31450	chr2:013403975	0.0	C/13403975-13404134,13403773-13403885,13403359-13403422,13403069-13403116,13402851-13402969,13402481-13402547,13402268-13402359,13401987-13402124,13401785-13401889,13401590-13401673,13401318-13401461	AT2G31450.2  CDS  gene_syn T28P16.6, T28P16_6  go_component intracellular|GO:0005622||IEA  go_process DNA repair|GO:0006281||IEA  go_process base-excision repair|GO:0006284||IEA  go_function DNA binding|GO:0003677||IEA  go_function catalytic activity|GO:0003824||IEA  go_function endonuclease activity|GO:0004519||IEA  go_function sequence-specific DNA binding|GO:0043565||IEA  go_function 4 iron, 4 sulfur cluster binding|GO:0051539||IEA  go_process base-excision repair|GO:0006284||ISS  product endonuclease-related  note endonuclease-related; FUNCTIONS IN: 4 iron, 4 sulfur cluster binding, sequence-specific DNA binding, DNA binding, catalytic activity, endonuclease activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-hairpin-helix motif (InterPro:IPR000445), Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), Endonuclease III, iron-sulphur binding, conserved site-1 (InterPro:IPR004035), DNA glycosylase (InterPro:IPR011257), Endonuclease III-like, iron-sulphur cluster loop (InterPro:IPR003651), Endonuclease III, conserved site-2 (InterPro:IPR004036), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: endonuclease-related (TAIR:AT1G05900.2); Has 9543 Blast hits to 9540 proteins in 1441 species: Archae - 225; Bacteria - 5142; Metazoa - 191; Fungi - 125; Plants - 83; Viruses - 0; Other Eukaryotes - 3777 (source: NCBI BLink).  protein_id AT2G31450.2p  transcript_id AT2G31450.2  protein_id AT2G31450.2p  transcript_id AT2G31450.2  
At2g31450	chr2:013403975	0.0	C/13403975-13404134,13403773-13403891,13403359-13403422,13403069-13403116,13402851-13402969,13402481-13402547,13402268-13402359,13401987-13402124,13401785-13401889,13401590-13401673,13401318-13401461	AT2G31450.1  CDS  gene_syn T28P16.6, T28P16_6  go_component intracellular|GO:0005622||IEA  go_process DNA repair|GO:0006281||IEA  go_process base-excision repair|GO:0006284||IEA  go_function DNA binding|GO:0003677||IEA  go_function catalytic activity|GO:0003824||IEA  go_function endonuclease activity|GO:0004519||IEA  go_function sequence-specific DNA binding|GO:0043565||IEA  go_function 4 iron, 4 sulfur cluster binding|GO:0051539||IEA  go_process base-excision repair|GO:0006284||ISS  product endonuclease-related  note endonuclease-related; FUNCTIONS IN: 4 iron, 4 sulfur cluster binding, sequence-specific DNA binding, DNA binding, catalytic activity, endonuclease activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-hairpin-helix motif (InterPro:IPR000445), Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), Endonuclease III, iron-sulphur binding, conserved site-1 (InterPro:IPR004035), DNA glycosylase (InterPro:IPR011257), Endonuclease III-like, iron-sulphur cluster loop (InterPro:IPR003651), Endonuclease III, conserved site-2 (InterPro:IPR004036), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: endonuclease-related (TAIR:AT1G05900.2); Has 9543 Blast hits to 9540 proteins in 1441 species: Archae - 225; Bacteria - 5142; Metazoa - 191; Fungi - 125; Plants - 83; Viruses - 0; Other Eukaryotes - 3777 (source: NCBI BLink).  protein_id AT2G31450.1p  transcript_id AT2G31450.1  protein_id AT2G31450.1p  transcript_id AT2G31450.1  
At2g31460	chr2:013404776	0.0	W/13404776-13405510	AT2G31460.1  CDS  gene_syn T28P16.5, T28P16_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G27410.1); Has 53 Blast hits to 53 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31460.1p  transcript_id AT2G31460.1  protein_id AT2G31460.1p  transcript_id AT2G31460.1  
At2g31470	chr2:013407492	0.0	C/13407492-13408655	AT2G31470.1  CDS  gene_syn T28P16.4, T28P16_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, pollen tube; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G65850.1); Has 705 Blast hits to 664 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 705; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31470.1p  transcript_id AT2G31470.1  protein_id AT2G31470.1p  transcript_id AT2G31470.1  
At2g31480	chr2:013409516	0.0	C/13409516-13410934	AT2G31480.1  CDS  gene_syn T28P16.3, T28P16_3  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05894.1); Has 384 Blast hits to 332 proteins in 78 species: Archae - 0; Bacteria - 38; Metazoa - 190; Fungi - 30; Plants - 20; Viruses - 2; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT2G31480.1p  transcript_id AT2G31480.1  protein_id AT2G31480.1p  transcript_id AT2G31480.1  
At2g31490	chr2:013412060	0.0	W/13412060-13412227,13412955-13413002	AT2G31490.1  CDS  gene_syn T28P16.2, T28P16_2  go_component mitochondrion|GO:0005739|12837548|IDA  go_component mitochondrial membrane|GO:0031966|16407270|IDA  go_component respiratory chain complex I|GO:0045271|16407270|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process photorespiration|GO:0009853|16407270|TAS  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, respiratory chain complex I; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31490.1p  transcript_id AT2G31490.1  protein_id AT2G31490.1p  transcript_id AT2G31490.1  
At2g31500	chr2:013414016	0.0	W/13414016-13414287,13414371-13414635,13414721-13414844,13414946-13415242,13415321-13415436,13415512-13415919,13416058-13416324	AT2G31500.1  CDS  gene_syn CPK24, T28P16.1  gene CPK24  function member of Calcium Dependent Protein Kinase  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  go_function kinase activity|GO:0016301||ISS  product CPK24; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase  note CPK24; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19); ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G19450.2); Has 92010 Blast hits to 89053 proteins in 2568 species: Archae - 74; Bacteria - 8076; Metazoa - 39736; Fungi - 10625; Plants - 14175; Viruses - 411; Other Eukaryotes - 18913 (source: NCBI BLink).  protein_id AT2G31500.1p  transcript_id AT2G31500.1  protein_id AT2G31500.1p  transcript_id AT2G31500.1  
At2g31510	chr2:013421000	0.0	C/13421000-13421170,13420607-13420731,13420354-13420459,13420172-13420262,13419740-13419912,13419264-13419368,13419081-13419169,13418822-13418929,13418613-13418703,13418393-13418482,13418262-13418309,13417876-13417947,13417693-13417792,13417485-13417611,13416991-13417183	AT2G31510.1  CDS  gene_syn T9H9.3, T9H9_3  go_function nucleic acid binding|GO:0003676||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7)  note IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7); FUNCTIONS IN: protein binding, zinc ion binding, nucleic acid binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: zinc finger protein-related (TAIR:AT1G05890.1); Has 2297 Blast hits to 2277 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 1139; Fungi - 386; Plants - 361; Viruses - 3; Other Eukaryotes - 408 (source: NCBI BLink).  protein_id AT2G31510.1p  transcript_id AT2G31510.1  protein_id AT2G31510.1p  transcript_id AT2G31510.1  
At2g31520	chr2:013421940	0.0	C/13421940-13427089	AT2G31520.1  mRNA_TE_gene  pseudo  gene_syn T9H9.4, T9H9_4  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 9.9e-44 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)  
At2g31530	chr2:013427060	0.0	W/13427060-13427144,13427439-13427936,13428027-13428115,13428213-13428292,13428422-13428511,13428620-13428711,13428822-13428905,13429058-13429199,13429361-13429477,13429592-13429721,13429818-13429941,13430027-13430133,13430219-13430308	AT2G31530.1  CDS  gene_syn EMB2289, EMBRYO DEFECTIVE 2289, SCY2, SECY HOMOLOG 2, T9H9.5, T9H9_5  gene EMB2289  go_component chloroplast|GO:0009507||IEA  go_component membrane|GO:0016020||IEA  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||IEA  go_component membrane|GO:0016020||ISS  go_process protein secretion|GO:0009306||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product EMB2289 (EMBRYO DEFECTIVE 2289); P-P-bond-hydrolysis-driven protein transmembrane transporter  note EMBRYO DEFECTIVE 2289 (EMB2289); FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: embryonic development ending in seed dormancy, protein secretion; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SecY protein (InterPro:IPR002208); BEST Arabidopsis thaliana protein match is: SCY1 (SecY Homolog 1); P-P-bond-hydrolysis-driven protein transmembrane transporter (TAIR:AT2G18710.1); Has 6152 Blast hits to 6152 proteins in 1480 species: Archae - 26; Bacteria - 2791; Metazoa - 3; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 3284 (source: NCBI BLink).  protein_id AT2G31530.1p  transcript_id AT2G31530.1  protein_id AT2G31530.1p  transcript_id AT2G31530.1  
At2g31540	chr2:013431416	0.0	C/13431416-13432045,13431035-13431293,13430733-13430926	AT2G31540.1  CDS  gene_syn T9H9.6, T9H9_6  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: RXF26; carboxylesterase/ hydrolase, acting on ester bonds (TAIR:AT1G58430.1); Has 1761 Blast hits to 1746 proteins in 130 species: Archae - 0; Bacteria - 162; Metazoa - 1; Fungi - 11; Plants - 1569; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT2G31540.1p  transcript_id AT2G31540.1  protein_id AT2G31540.1p  transcript_id AT2G31540.1  
At2g31550	chr2:013434563	0.0	C/13434563-13434769,13434182-13434440,13433904-13434097	AT2G31550.1  CDS  gene_syn T9H9.7, T9H9_7  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_component cellular_component|GO:0005575||ND  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT2G31540.1); Has 1634 Blast hits to 1625 proteins in 122 species: Archae - 0; Bacteria - 138; Metazoa - 1; Fungi - 15; Plants - 1466; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT2G31550.1p  transcript_id AT2G31550.1  protein_id AT2G31550.1p  transcript_id AT2G31550.1  
At2g31560	chr2:013436611	0.0	W/13436611-13437139,13437233-13437312	AT2G31560.1  CDS  gene_syn T9H9.8, T9H9_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05870.2); Has 130 Blast hits to 130 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 130; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31560.1p  transcript_id AT2G31560.1  protein_id AT2G31560.1p  transcript_id AT2G31560.1  
At2g31560	chr2:013436611	0.0	W/13436611-13437139,13437233-13437312	AT2G31560.2  CDS  gene_syn T9H9.8, T9H9_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05870.2); Has 130 Blast hits to 130 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 130; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31560.2p  transcript_id AT2G31560.2  protein_id AT2G31560.2p  transcript_id AT2G31560.2  
At2g31570	chr2:013439731	0.0	C/13439731-13439775,13439404-13439480,13438917-13438978,13438691-13438809,13438336-13438503,13438211-13438249	AT2G31570.1  CDS  gene_syn ATGPX2, GLUTATHIONE PEROXIDASE, GLUTATHIONE PEROXIDASE 2, T9H9.9, T9H9_9  gene ATGPX2  function glutathione peroxidase GPx  go_process response to oxidative stress|GO:0006979||IEA  go_function glutathione peroxidase activity|GO:0004602||IEA  go_component cytosol|GO:0005829|14617062|NAS  go_function glutathione peroxidase activity|GO:0004602||ISS  product ATGPX2 (GLUTATHIONE PEROXIDASE 2); glutathione peroxidase  note GLUTATHIONE PEROXIDASE 2 (ATGPX2); FUNCTIONS IN: glutathione peroxidase activity; INVOLVED IN: response to oxidative stress; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336), Glutathione peroxidase (InterPro:IPR000889); BEST Arabidopsis thaliana protein match is: ATGPX7 (glutathione peroxidase 7); glutathione peroxidase (TAIR:AT4G31870.1); Has 5393 Blast hits to 5392 proteins in 1016 species: Archae - 0; Bacteria - 1908; Metazoa - 692; Fungi - 136; Plants - 239; Viruses - 8; Other Eukaryotes - 2410 (source: NCBI BLink).  protein_id AT2G31570.1p  transcript_id AT2G31570.1  protein_id AT2G31570.1p  transcript_id AT2G31570.1  
At2g31580	chr2:013445780	0.0	C/13445780-13445837,13444651-13444837,13444284-13444415,13444156-13444200,13443848-13444017,13443632-13443717,13443341-13443448,13442715-13442971,13442311-13442442,13442193-13442237,13441938-13442107,13441752-13441837,13441552-13441659,13441137-13441256	AT2G31580.1  CDS  gene_syn T9H9.10, T9H9_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: tRNAHis guanylyltransferase (InterPro:IPR007537); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32320.1); Has 640 Blast hits to 336 proteins in 155 species: Archae - 65; Bacteria - 47; Metazoa - 212; Fungi - 176; Plants - 43; Viruses - 2; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT2G31580.1p  transcript_id AT2G31580.1  protein_id AT2G31580.1p  transcript_id AT2G31580.1  
At2g31585	chr2:013446002	0.0	W/13446002-13446729	AT2G31585.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G31585.1  
At2g31585	chr2:013446035	0.0	W/13446035-13446727	AT2G31585.2  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G31585.2  
At2g31590	chr2:013448037	0.0	C/13448037-13448133,13447585-13447912,13446829-13447126	AT2G31590.1  CDS  gene_syn T9H9.11, T9H9_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G04730.1); Has 29 Blast hits to 29 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G31590.1p  transcript_id AT2G31590.1  protein_id AT2G31590.1p  transcript_id AT2G31590.1  
At2g31600	chr2:013449443	0.0	C/13449443-13450083,13448541-13448805	AT2G31600.1  CDS  gene_syn T9H9.12, T9H9_12  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53860.1); Has 29 Blast hits to 28 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G31600.1p  transcript_id AT2G31600.1  protein_id AT2G31600.1p  transcript_id AT2G31600.1  
At2g31600	chr2:013449443	0.0	C/13449443-13450083,13449205-13449214	AT2G31600.2  CDS  gene_syn T9H9.12, T9H9_12  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53860.1); Has 27 Blast hits to 27 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G31600.2p  transcript_id AT2G31600.2  protein_id AT2G31600.2p  transcript_id AT2G31600.2  
At2g31610	chr2:013450384	0.0	W/13450384-13450413,13450497-13450644,13450725-13450896,13451178-13451364,13451454-13451669	AT2G31610.1  CDS  gene_syn T9H9.13, T9H9_13  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_process response to abiotic stimulus|GO:0009628|12969430|IEP  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S3 (RPS3A)  note 40S ribosomal protein S3 (RPS3A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: response to salt stress, translation, response to abiotic stimulus; LOCATED IN: in 6 components; EXPRESSED IN: root, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: K Homology, prokaryotic type (InterPro:IPR009019), K Homology, type 2 (InterPro:IPR004044), K Homology (InterPro:IPR004087), Ribosomal protein S3, C-terminal (InterPro:IPR001351), Ribosomal protein S3, conserved site (InterPro:IPR018280), Ribosomal protein S3, eukaryotic/archaeal (InterPro:IPR005703); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S3 (RPS3B) (TAIR:AT3G53870.1); Has 3946 Blast hits to 3943 proteins in 1195 species: Archae - 174; Bacteria - 1992; Metazoa - 298; Fungi - 94; Plants - 101; Viruses - 0; Other Eukaryotes - 1287 (source: NCBI BLink).  protein_id AT2G31610.1p  transcript_id AT2G31610.1  protein_id AT2G31610.1p  transcript_id AT2G31610.1  
At2g31620	chr2:013452588	0.0	C/13452588-13452908,13451991-13452437	AT2G31620.1  CDS  gene_syn T9H9.14, T9H9_14  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product receptor-like protein kinase-related  note receptor-like protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: beta-galactosidase (TAIR:AT3G21960.2); Has 935 Blast hits to 910 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 935; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31620.1p  transcript_id AT2G31620.1  protein_id AT2G31620.1p  transcript_id AT2G31620.1  
At2g31625	chr2:013453331	0.0	C/13453331-13455235	AT2G31625.1  pseudogenic_transcript  pseudo  function unknown pseudogene  
At2g31650	chr2:013461598	0.0	C/13461598-13462181,13461391-13461442,13461215-13461289,13460892-13461111,13460614-13460740,13460402-13460506,13460048-13460247,13459835-13459927,13459623-13459720,13459372-13459530,13458432-13458575,13458302-13458349,13458063-13458180,13457923-13457988,13457750-13457811,13457594-13457650,13457432-13457500,13457133-13457316,13456585-13456830,13456325-13456386,13456168-13456245,13455850-13455945,13455667-13455770,13455448-13455589	AT2G31650.1  CDS  gene_syn ARABIDOPSIS HOMOLOGUE OF TRITHORAX, ATX1, SDG27, SET DOMAIN PROTEIN 27, T9H9.17, T9H9_17  gene ATX1  function Encodes a homolog of trithorax, a histone-lysine N-methyltransferase. Involved in trimethylating histone H3-lysine 4. Involved in the formation, placement, and identity of flower organs. Role in regulation of homeotic genes. Functions as a receptor of phosphatidylinositol 5-phosphate. Localizes to cytoplasm, plasma membrane and nuclei, shifting to nuclei in the presence of PI5P.  go_component nucleus|GO:0005634|16585509|IDA  go_component cytoplasm|GO:0005737|16585509|IDA  go_component plasma membrane|GO:0005886|16585509|IDA  go_process regulation of flower development|GO:0009909|12699618|IMP  go_process specification of floral organ identity|GO:0010093|12699618|IMP  go_process histone H3-K4 methylation|GO:0051568|16157865|IDA  go_function phosphatidylinositol-5-phosphate binding|GO:0010314|16585509|IDA  go_function histone-lysine N-methyltransferase activity|GO:0018024|12699618|IDA  product ATX1 (ARABIDOPSIS HOMOLOGUE OF TRITHORAX); histone-lysine N-methyltransferase/ phosphatidylinositol-5-phosphate binding  note ARABIDOPSIS HOMOLOGUE OF TRITHORAX (ATX1); FUNCTIONS IN: phosphatidylinositol-5-phosphate binding, histone-lysine N-methyltransferase activity; INVOLVED IN: histone H3-K4 methylation, specification of floral organ identity, regulation of flower development; LOCATED IN: plasma membrane, nucleus, cytoplasm; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), Zinc finger, PHD-type (InterPro:IPR001965), FY-rich, C-terminal (InterPro:IPR003889), Post-SET zinc-binding region (InterPro:IPR003616), FY-rich, N-terminal (InterPro:IPR003888), Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), FY-rich, C-terminal subgroup (InterPro:IPR018516), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), PWWP (InterPro:IPR000313), FY-rich, N-terminal subgroup (InterPro:IPR018518); BEST Arabidopsis thaliana protein match is: ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2); DNA binding / histone methyltransferase(H3-K4 specific) (TAIR:AT1G05830.2); Has 5446 Blast hits to 5268 proteins in 345 species: Archae - 2; Bacteria - 282; Metazoa - 2934; Fungi - 554; Plants - 629; Viruses - 0; Other Eukaryotes - 1045 (source: NCBI BLink).  protein_id AT2G31650.1p  transcript_id AT2G31650.1  protein_id AT2G31650.1p  transcript_id AT2G31650.1  
At2g31660	chr2:013464519	0.0	W/13464519-13464611,13464919-13465054,13465138-13465234,13465601-13465750,13466145-13466307,13466449-13466633,13466706-13466879,13467098-13467243,13467326-13467449,13467531-13467711,13467972-13468131,13468260-13468301,13468391-13468509,13468597-13468795,13469087-13469218,13469349-13469452,13469773-13469952,13470199-13470338,13470460-13470599,13470688-13470845,13470939-13471065,13471181-13471353	AT2G31660.1  CDS  gene_syn SAD2, SUPER SENSITIVE TO ABA AND DROUGHT2, T9H9.18, T9H9_18, UNARMED 9, URM9  gene SAD2  function SAD2 (super sensitive to ABA and drought 2) encodes an importin beta-domain family protein likely to be involved in nuclear transport in ABA signaling. Subcellular localization of GFP-tagged SAD2 showed a predominantly nuclear localization, consistent with a role for SAD2 in nuclear transport. Mutation of SAD2 in Arabidopsis alters abscisic acid sensitivity. SAD2 was ubiquitously expressed at low levels in all tissues except flowers. SAD2 expression was not induced by ABA or stress. Loss of function mutations in SAD2 exhibit increased tolerance for UV stress, increased production of UV protective secondary metabolites and suppression of nuclear localization of MYB4 (a repressor of UV stress response genes).  go_function binding|GO:0005488||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component nucleus|GO:0005634|16889648|IDA  go_component nucleus|GO:0005634||ISS  go_component nuclear pore|GO:0005643||ISS  go_component cytoplasm|GO:0005737|16889648|IDA  go_component cytoplasm|GO:0005737||ISS  go_process protein import into nucleus, docking|GO:0000059||ISS  go_process protein import into nucleus|GO:0006606|17993626|IDA  go_function protein transporter activity|GO:0008565||ISS  product SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2); binding / protein transporter  note SUPER SENSITIVE TO ABA AND DROUGHT2 (SAD2); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: protein import into nucleus, docking, protein import into nucleus; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding / protein transporter (TAIR:AT3G59020.2); Has 3296 Blast hits to 2422 proteins in 226 species: Archae - 2; Bacteria - 170; Metazoa - 1253; Fungi - 646; Plants - 211; Viruses - 63; Other Eukaryotes - 951 (source: NCBI BLink).  protein_id AT2G31660.1p  transcript_id AT2G31660.1  protein_id AT2G31660.1p  transcript_id AT2G31660.1  
At2g31670	chr2:013472699	0.0	C/13472699-13473490	AT2G31670.1  CDS  gene_syn T9H9.19, T9H9_19  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: peroxisome, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Stress responsive alpha-beta barrel (InterPro:IPR013097), Dimeric alpha-beta barrel (InterPro:IPR011008); BEST Arabidopsis thaliana protein match is: DABB1 (DIMERIC A/B BARREL DOMAINS-PROTEIN 1) (TAIR:AT1G51360.1); Has 138 Blast hits to 135 proteins in 38 species: Archae - 0; Bacteria - 51; Metazoa - 0; Fungi - 4; Plants - 74; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G31670.1p  transcript_id AT2G31670.1  protein_id AT2G31670.1p  transcript_id AT2G31670.1  
At2g31680	chr2:013474624	0.0	C/13474624-13474957,13473781-13474106	AT2G31680.1  CDS  gene_syn Arabidopsis Rab GTPase homolog A5d, AtRABA5d, T9H9.20, T9H9_20  gene AtRABA5d  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product AtRABA5d (Arabidopsis Rab GTPase homolog A5d); GTP binding  note Arabidopsis Rab GTPase homolog A5d (AtRABA5d); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RABA5E (RAB GTPASE HOMOLOG A5E); GTP binding (TAIR:AT1G05810.1); Has 22158 Blast hits to 22127 proteins in 625 species: Archae - 15; Bacteria - 90; Metazoa - 12435; Fungi - 2549; Plants - 2038; Viruses - 19; Other Eukaryotes - 5012 (source: NCBI BLink).  protein_id AT2G31680.1p  transcript_id AT2G31680.1  protein_id AT2G31680.1p  transcript_id AT2G31680.1  
At2g31690	chr2:013476093	0.0	C/13476093-13477547	AT2G31690.1  CDS  gene_syn T9H9.21, T9H9_21  function encodes a triacylglycerol lipase located in plastoglobuli and involved in the degradation of triacylglycerol. It also has impact on leaf senescence and maintaining the structural integrity of thylakoids.  go_component chloroplast stroma|GO:0009570|17259290|IDA  go_process lipid metabolic process|GO:0006629||ISS  go_process thylakoid membrane organization|GO:0010027|17259290|IDA  go_process leaf senescence|GO:0010150|17259290|IMP  go_process triglyceride catabolic process|GO:0019433|17259290|IDA  go_function triacylglycerol lipase activity|GO:0004806|17259290|IDA  go_function triacylglycerol lipase activity|GO:0004806||ISS  product lipase class 3 family protein  note lipase class 3 family protein; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: leaf senescence, triglyceride catabolic process, thylakoid membrane organization, lipid metabolic process; LOCATED IN: chloroplast stroma; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: DGL (DONGLE); triacylglycerol lipase (TAIR:AT1G05800.1); Has 726 Blast hits to 721 proteins in 156 species: Archae - 0; Bacteria - 117; Metazoa - 26; Fungi - 162; Plants - 276; Viruses - 3; Other Eukaryotes - 142 (source: NCBI BLink).  protein_id AT2G31690.1p  transcript_id AT2G31690.1  protein_id AT2G31690.1p  transcript_id AT2G31690.1  
At2g31700	chr2:013480510	0.0	W/13480510-13480590,13480895-13481021,13481381-13481568	AT2G31700.1  CDS  gene_syn T9H9.22, T9H9_22  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31700.1p  transcript_id AT2G31700.1  protein_id AT2G31700.1p  transcript_id AT2G31700.1  
At2g31710	chr2:013482799	0.0	C/13482799-13482895,13482057-13482277	AT2G31710.1  CDS  gene_syn T9H9.23, T9H9_23  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05780.1); Has 17 Blast hits to 17 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31710.1p  transcript_id AT2G31710.1  protein_id AT2G31710.1p  transcript_id AT2G31710.1  
At2g31720	chr2:013485034	0.0	C/13485034-13485975	AT2G31720.1  CDS  gene_syn T9H9.24, T9H9_24  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508), Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT2G18810.1); Has 61 Blast hits to 61 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31720.1p  transcript_id AT2G31720.1  protein_id AT2G31720.1p  transcript_id AT2G31720.1  
At2g31725	chr2:013487263	0.0	C/13487263-13487391,13486704-13486841,13486447-13486629	AT2G31725.1  CDS  gene_syn T9H9.25, T9H9_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF842, eukaryotic (InterPro:IPR008560); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05730.1); Has 199 Blast hits to 199 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 152; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT2G31725.1p  transcript_id AT2G31725.1  protein_id AT2G31725.1p  transcript_id AT2G31725.1  
At2g31730	chr2:013488477	0.0	C/13488477-13488593,13488302-13488367,13488159-13488224,13488028-13488072,13487783-13487950	AT2G31730.1  CDS  gene_syn T9H9.27  go_component nucleus|GO:0005634||IEA  go_process response to ethylene stimulus|GO:0009723||ISS  go_process response to gibberellin stimulus|GO:0009739|17933900|IEP  go_function transcription factor activity|GO:0003700|12679534|ISS  product ethylene-responsive protein, putative  note ethylene-responsive protein, putative; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to ethylene stimulus, response to gibberellin stimulus; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: ethylene-responsive protein, putative (TAIR:AT1G05710.4); Has 594 Blast hits to 594 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 594; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31730.1p  transcript_id AT2G31730.1  protein_id AT2G31730.1p  transcript_id AT2G31730.1  
At2g31740	chr2:013494623	0.0	C/13494623-13495009,13494424-13494525,13494230-13494296,13493943-13494115,13493546-13493803,13493356-13493439,13493212-13493259,13493064-13493125,13492890-13492938,13492419-13492668,13492213-13492337,13492040-13492120,13491891-13491965,13491617-13491783,13491377-13491527,13491053-13491256	AT2G31740.1  CDS  gene_syn F20M17.22, F20M17_22  go_process metabolic process|GO:0008152||IEA  go_function methyltransferase activity|GO:0008168||IEA  product methyltransferase  note methyltransferase; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: spermidine synthase-related / putrescine aminopropyltransferase-related (TAIR:AT5G04610.1); Has 1448 Blast hits to 1421 proteins in 339 species: Archae - 18; Bacteria - 478; Metazoa - 298; Fungi - 34; Plants - 123; Viruses - 0; Other Eukaryotes - 497 (source: NCBI BLink).  protein_id AT2G31740.1p  transcript_id AT2G31740.1  protein_id AT2G31740.1p  transcript_id AT2G31740.1  
At2g31750	chr2:013497312	0.0	W/13497312-13497956,13499145-13499870	AT2G31750.1  CDS  gene_syn F20M17.21, F20M17_21, UDP-glucosyl transferase 74D1, UGT74D1  gene UGT74D1  go_process metabolic process|GO:0008152||IEA  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function abscisic acid glucosyltransferase activity|GO:0010294||IDA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product UGT74D1 (UDP-glucosyl transferase 74D1); UDP-glycosyltransferase/ abscisic acid glucosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note UDP-glucosyl transferase 74D1 (UGT74D1); FUNCTIONS IN: transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT1G05680.1); Has 5131 Blast hits to 5083 proteins in 327 species: Archae - 0; Bacteria - 161; Metazoa - 2102; Fungi - 9; Plants - 2721; Viruses - 108; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT2G31750.1p  transcript_id AT2G31750.1  protein_id AT2G31750.1p  transcript_id AT2G31750.1  
At2g31751	chr2:013499341	0.0	C/13499341-13502114	AT2G31751.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G31750  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G31751.1  
At2g31760	chr2:013508493	0.0	W/13508493-13509668,13509938-13510031,13510116-13510390	AT2G31760.1  CDS  gene_syn F20M17.20, F20M17_20  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger protein-related  note zinc finger protein-related; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G31770.1); Has 2415 Blast hits to 2391 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 1154; Fungi - 408; Plants - 377; Viruses - 7; Other Eukaryotes - 469 (source: NCBI BLink).  protein_id AT2G31760.1p  transcript_id AT2G31760.1  protein_id AT2G31760.1p  transcript_id AT2G31760.1  
At2g31770	chr2:013511579	0.0	W/13511579-13512784,13513041-13513134,13513219-13513550	AT2G31770.1  CDS  gene_syn F20M17.19, F20M17_19  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: sepal, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C6HC-type (InterPro:IPR002867); BEST Arabidopsis thaliana protein match is: zinc finger protein-related (TAIR:AT2G31760.1); Has 2368 Blast hits to 2347 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 1140; Fungi - 415; Plants - 371; Viruses - 8; Other Eukaryotes - 434 (source: NCBI BLink).  protein_id AT2G31770.1p  transcript_id AT2G31770.1  protein_id AT2G31770.1p  transcript_id AT2G31770.1  
At2g31780	chr2:013515199	0.0	W/13515199-13516437,13516959-13517047,13517139-13517142	AT2G31780.1  CDS  gene_syn ARI11, ARIADNE 11, ATARI11, F20M17.18, F20M17_18  gene ARI11  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger protein-related (TAIR:AT2G31760.1); Has 2345 Blast hits to 2327 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 1163; Fungi - 384; Plants - 350; Viruses - 3; Other Eukaryotes - 445 (source: NCBI BLink).  protein_id AT2G31780.1p  transcript_id AT2G31780.1  protein_id AT2G31780.1p  transcript_id AT2G31780.1  
At2g31790	chr2:013518269	0.0	W/13518269-13518555,13518993-13519353,13519442-13520167	AT2G31790.1  CDS  gene_syn F20M17.17, F20M17_17  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT1G05680.1); Has 5446 Blast hits to 5413 proteins in 386 species: Archae - 0; Bacteria - 314; Metazoa - 2244; Fungi - 30; Plants - 2708; Viruses - 111; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT2G31790.1p  transcript_id AT2G31790.1  protein_id AT2G31790.1p  transcript_id AT2G31790.1  
At2g31800	chr2:013523218	0.0	C/13523218-13523646,13523057-13523131,13522866-13522970,13522685-13522770,13522254-13522374,13522074-13522153,13521923-13521985,13521700-13521821,13521461-13521546,13521054-13521178,13520787-13520918,13520605-13520611	AT2G31800.1  CDS  gene_syn F20M17.16, F20M17_16  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process regulation of signal transduction|GO:0009966||IEA  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  product ankyrin protein kinase, putative  note ankyrin protein kinase, putative; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: regulation of signal transduction, protein amino acid phosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Integrin-linked protein kinase (InterPro:IPR016253), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin protein kinase, putative (APK1) (TAIR:AT2G43850.1); Has 124713 Blast hits to 96962 proteins in 3024 species: Archae - 103; Bacteria - 9310; Metazoa - 61180; Fungi - 9043; Plants - 18707; Viruses - 698; Other Eukaryotes - 25672 (source: NCBI BLink).  protein_id AT2G31800.1p  transcript_id AT2G31800.1  protein_id AT2G31800.1p  transcript_id AT2G31800.1  
At2g31810	chr2:013524271	0.0	W/13524271-13524518,13524596-13524809,13524965-13525048,13525174-13525242,13525751-13525834,13526001-13526153,13526423-13526509,13526796-13526900,13526982-13527104,13527402-13527554,13527798-13527863,13528157-13528246	AT2G31810.1  CDS  gene_syn F20M17.15, F20M17_15  go_component chloroplast|GO:0009507|18431481|IDA  go_function acetolactate synthase activity|GO:0003984||IEA  go_function amino acid binding|GO:0016597||IEA  go_process branched chain family amino acid biosynthetic process|GO:0009082|10487214|TAS  product acetolactate synthase small subunit, putative  note acetolactate synthase small subunit, putative; FUNCTIONS IN: acetolactate synthase activity, amino acid binding; INVOLVED IN: branched chain family amino acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acetolactate synthase, small subunit (InterPro:IPR004789), Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: acetolactate synthase small subunit, putative (TAIR:AT5G16290.2); Has 8371 Blast hits to 4290 proteins in 1102 species: Archae - 146; Bacteria - 3993; Metazoa - 0; Fungi - 172; Plants - 54; Viruses - 0; Other Eukaryotes - 4006 (source: NCBI BLink).  protein_id AT2G31810.1p  transcript_id AT2G31810.1  protein_id AT2G31810.1p  transcript_id AT2G31810.1  
At2g31810	chr2:013524271	0.0	W/13524271-13524518,13524596-13524809,13524965-13525048,13525174-13525242,13525751-13525834,13526001-13526153,13526423-13526509,13526796-13526900,13526982-13527104,13527402-13527554,13528157-13528246	AT2G31810.3  CDS  gene_syn F20M17.15, F20M17_15  go_component chloroplast|GO:0009507|18431481|IDA  go_function acetolactate synthase activity|GO:0003984||IEA  go_function amino acid binding|GO:0016597||IEA  go_process branched chain family amino acid biosynthetic process|GO:0009082|10487214|TAS  product acetolactate synthase small subunit, putative  note acetolactate synthase small subunit, putative; FUNCTIONS IN: acetolactate synthase activity, amino acid binding; INVOLVED IN: branched chain family amino acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acetolactate synthase, small subunit (InterPro:IPR004789), Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: acetolactate synthase small subunit, putative (TAIR:AT5G16290.2); Has 8234 Blast hits to 4270 proteins in 1102 species: Archae - 144; Bacteria - 3986; Metazoa - 0; Fungi - 168; Plants - 54; Viruses - 0; Other Eukaryotes - 3882 (source: NCBI BLink).  protein_id AT2G31810.3p  transcript_id AT2G31810.3  protein_id AT2G31810.3p  transcript_id AT2G31810.3  
At2g31810	chr2:013524419	0.0	W/13524419-13524518,13524661-13524809,13524965-13525048,13525174-13525242,13525751-13525834,13526001-13526153,13526423-13526509,13526796-13526905,13526984-13527104,13527402-13527554,13527798-13527863,13528157-13528246	AT2G31810.2  CDS  gene_syn F20M17.15, F20M17_15  go_component chloroplast|GO:0009507|18431481|IDA  go_function acetolactate synthase activity|GO:0003984||IEA  go_function amino acid binding|GO:0016597||IEA  go_process branched chain family amino acid biosynthetic process|GO:0009082|10487214|TAS  product acetolactate synthase small subunit, putative  note acetolactate synthase small subunit, putative; FUNCTIONS IN: acetolactate synthase activity, amino acid binding; INVOLVED IN: branched chain family amino acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acetolactate synthase, small subunit (InterPro:IPR004789), Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: acetolactate synthase small subunit, putative (TAIR:AT5G16290.2); Has 7978 Blast hits to 4103 proteins in 1084 species: Archae - 142; Bacteria - 3865; Metazoa - 0; Fungi - 169; Plants - 71; Viruses - 0; Other Eukaryotes - 3731 (source: NCBI BLink).  protein_id AT2G31810.2p  transcript_id AT2G31810.2  protein_id AT2G31810.2p  transcript_id AT2G31810.2  
At2g31820	chr2:013530350	0.0	W/13530350-13531061,13531141-13531550,13531696-13532562	AT2G31820.1  CDS  gene_syn F20M17.14, F20M17_14  go_component plasma membrane|GO:0005886|17317660|IDA  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT1G05640.1); Has 55766 Blast hits to 22319 proteins in 769 species: Archae - 46; Bacteria - 3999; Metazoa - 28933; Fungi - 4871; Plants - 2904; Viruses - 619; Other Eukaryotes - 14394 (source: NCBI BLink).  protein_id AT2G31820.1p  transcript_id AT2G31820.1  protein_id AT2G31820.1p  transcript_id AT2G31820.1  
At2g31830	chr2:013536819	0.0	C/13536819-13537665,13536475-13536727,13535589-13536393,13535216-13535340,13534936-13535020,13534595-13534760,13534452-13534492,13534076-13534343,13533811-13533934,13533362-13533722,13532905-13533264	AT2G31830.1  CDS  gene_syn F20M17.13, F20M17_13  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437||IEA  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437||ISS  product endonuclease/exonuclease/phosphatase family protein  note endonuclease/exonuclease/phosphatase family protein; FUNCTIONS IN: inositol or phosphatidylinositol phosphatase activity; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), Quinoprotein amine dehydrogenase, beta chain-like (InterPro:IPR011044); BEST Arabidopsis thaliana protein match is: 5PTASE13; inositol or phosphatidylinositol phosphatase (TAIR:AT1G05630.2); Has 1544 Blast hits to 1515 proteins in 178 species: Archae - 0; Bacteria - 25; Metazoa - 696; Fungi - 344; Plants - 256; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).  protein_id AT2G31830.1p  transcript_id AT2G31830.1  protein_id AT2G31830.1p  transcript_id AT2G31830.1  
At2g31840	chr2:013539450	0.0	C/13539450-13539602,13538784-13539358,13538434-13538515,13538222-13538333,13538003-13538133	AT2G31840.1  CDS  gene_syn F20M17.12, F20M17_12  go_component chloroplast|GO:0009507||IEA  product unknown protein  note LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28590.1); Has 865 Blast hits to 660 proteins in 98 species: Archae - 0; Bacteria - 14; Metazoa - 354; Fungi - 73; Plants - 57; Viruses - 25; Other Eukaryotes - 342 (source: NCBI BLink).  protein_id AT2G31840.1p  transcript_id AT2G31840.1  protein_id AT2G31840.1p  transcript_id AT2G31840.1  
At2g31850	chr2:013540199	0.0	W/13540199-13540540	AT2G31850.1  CDS  gene_syn F20M17.11, F20M17_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 16 Blast hits to 16 proteins in 9 species: Archae - 0; Bacteria - 2; Metazoa - 7; Fungi - 4; Plants - 1; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G31850.1p  transcript_id AT2G31850.1  protein_id AT2G31850.1p  transcript_id AT2G31850.1  
At2g31860	chr2:013542483	0.0	C/13542483-13545266	AT2G31860.1  pseudogenic_transcript  pseudo  gene_syn F20M17.10, F20M17_10  note pseudogene, poly (ADP-ribose) glycohydrolase, putative, contains Pfam domain, PF05028: poly (ADP-ribose) glycohydrolase (PARG); blastp match of 59% identity and 1.4e-19 P-value to EGAD|134505|143482 114E2.c protein {Drosophila melanogaster}  
At2g31862	chr2:013545770	0.0	W/13545770-13546294	AT2G31862.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT2G18810.1); Has 16 Blast hits to 16 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31862.1p  transcript_id AT2G31862.1  protein_id AT2G31862.1p  transcript_id AT2G31862.1  
At2g31865	chr2:013549224	0.0	C/13549224-13549472,13548906-13549091,13548627-13548730,13548342-13548546,13548122-13548226,13547881-13547999,13547629-13547772,13547452-13547536,13547182-13547352,13547029-13547091,13546790-13546927	AT2G31865.1  CDS  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function poly(ADP-ribose) glycohydrolase activity|GO:0004649||IEA  go_component cellular_component|GO:0005575||ND  go_function poly(ADP-ribose) glycohydrolase activity|GO:0004649||ISS  product poly (ADP-ribose) glycohydrolase (PARG) family protein  note poly (ADP-ribose) glycohydrolase (PARG) family protein; FUNCTIONS IN: poly(ADP-ribose) glycohydrolase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Poly(ADP-ribose) glycohydrolase (InterPro:IPR007724); BEST Arabidopsis thaliana protein match is: TEJ (Sanskrit for  bright ); poly(ADP-ribose) glycohydrolase (TAIR:AT2G31870.2); Has 278 Blast hits to 262 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 160; Fungi - 7; Plants - 25; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT2G31865.1p  transcript_id AT2G31865.1  protein_id AT2G31865.1p  transcript_id AT2G31865.1  
At2g31865	chr2:013549224	0.0	C/13549224-13549472,13548906-13549091,13548627-13548730,13548342-13548546,13548122-13548226,13547881-13547999,13547629-13547772,13547452-13547536,13547182-13547382,13547029-13547091,13546790-13546927	AT2G31865.2  CDS  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function poly(ADP-ribose) glycohydrolase activity|GO:0004649||IEA  go_component cellular_component|GO:0005575||ND  go_function poly(ADP-ribose) glycohydrolase activity|GO:0004649||ISS  product poly (ADP-ribose) glycohydrolase (PARG) family protein  note poly (ADP-ribose) glycohydrolase (PARG) family protein; FUNCTIONS IN: poly(ADP-ribose) glycohydrolase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Poly(ADP-ribose) glycohydrolase (InterPro:IPR007724); BEST Arabidopsis thaliana protein match is: TEJ (Sanskrit for  bright ); poly(ADP-ribose) glycohydrolase (TAIR:AT2G31870.2); Has 278 Blast hits to 262 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 7; Plants - 25; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT2G31865.2p  transcript_id AT2G31865.2  protein_id AT2G31865.2p  transcript_id AT2G31865.2  
At2g31870	chr2:013553514	0.0	C/13553514-13553756,13553231-13553416,13552826-13552929,13552222-13552399,13552023-13552127,13551773-13551891,13551297-13551440,13550993-13551137,13550680-13550877,13550351-13550413,13549999-13550160	AT2G31870.1  CDS  gene_syn F20M17.9, F20M17_9, Sanskrit for  bright , TEJ  gene TEJ  function mutant has Long free-running circadian period; Poly (ADP-ribose) Glycohydrolase  go_component cellular_component|GO:0005575||ND  go_process regulation of circadian rhythm|GO:0042752|12110167|IMP  go_function poly(ADP-ribose) glycohydrolase activity|GO:0004649|12110167|IMP  go_function poly(ADP-ribose) glycohydrolase activity|GO:0004649||ISS  product TEJ (Sanskrit for  bright ); poly(ADP-ribose) glycohydrolase  note Sanskrit for  bright  (TEJ); FUNCTIONS IN: poly(ADP-ribose) glycohydrolase activity; INVOLVED IN: regulation of circadian rhythm; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Poly(ADP-ribose) glycohydrolase (InterPro:IPR007724); BEST Arabidopsis thaliana protein match is: poly (ADP-ribose) glycohydrolase (PARG) family protein (TAIR:AT2G31865.2); Has 440 Blast hits to 293 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 292; Fungi - 8; Plants - 25; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).  protein_id AT2G31870.1p  transcript_id AT2G31870.1  protein_id AT2G31870.1p  transcript_id AT2G31870.1  
At2g31870	chr2:013553514	0.0	C/13553514-13553756,13553231-13553416,13552826-13552929,13552222-13552399,13552023-13552127,13551773-13551891,13551297-13551440,13550996-13551137,13550680-13550877,13550351-13550413,13549999-13550160	AT2G31870.2  CDS  gene_syn F20M17.9, F20M17_9, Sanskrit for  bright , TEJ  gene TEJ  function mutant has Long free-running circadian period; Poly (ADP-ribose) Glycohydrolase  go_component cellular_component|GO:0005575||ND  go_process regulation of circadian rhythm|GO:0042752|12110167|IMP  go_function poly(ADP-ribose) glycohydrolase activity|GO:0004649|12110167|IMP  go_function poly(ADP-ribose) glycohydrolase activity|GO:0004649||ISS  product TEJ (Sanskrit for  bright ); poly(ADP-ribose) glycohydrolase  note Sanskrit for  bright  (TEJ); FUNCTIONS IN: poly(ADP-ribose) glycohydrolase activity; INVOLVED IN: regulation of circadian rhythm; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Poly(ADP-ribose) glycohydrolase (InterPro:IPR007724); BEST Arabidopsis thaliana protein match is: poly (ADP-ribose) glycohydrolase (PARG) family protein (TAIR:AT2G31865.2); Has 430 Blast hits to 293 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 283; Fungi - 8; Plants - 25; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).  protein_id AT2G31870.2p  transcript_id AT2G31870.2  protein_id AT2G31870.2p  transcript_id AT2G31870.2  
At2g31880	chr2:013554920	0.0	W/13554920-13556845	AT2G31880.1  CDS  gene_syn F20M17.8, F20M17_8  function Encodes a putative leucine rich repeat transmembrane protein that is expressed in response to Pseudomonas syringae. Expression of SRRLK may be required for silencing via lsiRNAs.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: HAE (HAESA); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT4G28490.1); Has 120958 Blast hits to 94599 proteins in 3368 species: Archae - 87; Bacteria - 9214; Metazoa - 43356; Fungi - 7430; Plants - 43743; Viruses - 390; Other Eukaryotes - 16738 (source: NCBI BLink).  protein_id AT2G31880.1p  transcript_id AT2G31880.1  protein_id AT2G31880.1p  transcript_id AT2G31880.1  
At2g31890	chr2:013559592	0.0	C/13559592-13559715,13559406-13559512,13557539-13559171,13557365-13557447,13557100-13557168	AT2G31890.1  CDS  gene_syn ATRAP, F20M17.7, F20M17_7, RAP  gene RAP  function Protein contains putative RNA binding domain. Expressed in response to Pseudomonas syringae infection. Resistance requires silencing of AtRAP suggesting it functions as a negative regulator of plant disease resistance.  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product RAP  note RAP; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RAP domain (InterPro:IPR013584); Has 607 Blast hits to 462 proteins in 89 species: Archae - 0; Bacteria - 30; Metazoa - 120; Fungi - 20; Plants - 97; Viruses - 0; Other Eukaryotes - 340 (source: NCBI BLink).  protein_id AT2G31890.1p  transcript_id AT2G31890.1  protein_id AT2G31890.1p  transcript_id AT2G31890.1  
At2g31900	chr2:013569621	0.0	C/13569621-13569623,13569403-13569531,13569126-13569269,13568880-13569025,13568642-13568798,13568512-13568570,13568256-13568415,13568022-13568171,13567809-13567945,13567583-13567729,13567217-13567318,13567080-13567137,13566906-13567007,13566771-13566808,13566538-13566664,13566289-13566459,13566087-13566218,13565890-13565996,13565727-13565787,13565448-13565625,13565067-13565272,13564655-13564774,13564408-13564506,13564119-13564334,13563911-13564050,13563723-13563824,13563438-13563546,13563309-13563353,13563179-13563238,13562887-13563057,13562638-13562793,13562356-13562562,13562113-13562262,13561957-13562027,13561775-13561874,13561621-13561677,13561480-13561536,13561169-13561249,13560963-13561045,13560760-13560892	AT2G31900.1  CDS  gene_syn ATMYO5, ATXIF, F20M17.6, F20M17_6, MYOSIN 5, MYOSIN XI F, XIF  gene XIF  function Encodes an novel myosin isoform.  go_component unconventional myosin complex|GO:0016461|7811972|ISS  go_process actin filament-based movement|GO:0030048|11516337|TAS  go_function motor activity|GO:0003774|11516337|ISS  product XIF; motor  note XIF; FUNCTIONS IN: motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: unconventional myosin complex; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor region (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: XIK; motor/ protein binding (TAIR:AT5G20490.1); Has 30883 Blast hits to 19547 proteins in 1206 species: Archae - 338; Bacteria - 1973; Metazoa - 17931; Fungi - 2288; Plants - 1234; Viruses - 64; Other Eukaryotes - 7055 (source: NCBI BLink).  protein_id AT2G31900.1p  transcript_id AT2G31900.1  protein_id AT2G31900.1p  transcript_id AT2G31900.1  
At2g31910	chr2:013571717	0.0	W/13571717-13572095,13572191-13574019	AT2G31910.1  CDS  gene_syn ATCHX21, CATION/H+ EXCHANGER 21, CHX21, F20M17.5, F20M17_5  gene ATCHX21  function member of Putative Na+/H+ antiporter family  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812||IEA  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product ATCHX21 (CATION/H+ EXCHANGER 21); sodium:hydrogen antiporter  note CATION/H+ EXCHANGER 21 (ATCHX21); FUNCTIONS IN: sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: male gametophyte, root, pollen tube, leaf; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: ATCHX23 (CATION/H+ EXCHANGER 23); monovalent cation:proton antiporter/ sodium:hydrogen antiporter (TAIR:AT1G05580.2); Has 2625 Blast hits to 2613 proteins in 752 species: Archae - 150; Bacteria - 1811; Metazoa - 0; Fungi - 80; Plants - 248; Viruses - 0; Other Eukaryotes - 336 (source: NCBI BLink).  protein_id AT2G31910.1p  transcript_id AT2G31910.1  protein_id AT2G31910.1p  transcript_id AT2G31910.1  
At2g31920	chr2:013575798	0.0	C/13575798-13576367,13575021-13575398,13574861-13574952,13574053-13574770	AT2G31920.1  CDS  gene_syn F20M17.4, F20M17_4  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF936, plant (InterPro:IPR010341); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19610.1); Has 123 Blast hits to 83 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 123; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31920.1p  transcript_id AT2G31920.1  protein_id AT2G31920.1p  transcript_id AT2G31920.1  
At2g31930	chr2:013577566	0.0	W/13577566-13577997	AT2G31930.1  CDS  gene_syn F20M17.3, F20M17_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31930.1p  transcript_id AT2G31930.1  protein_id AT2G31930.1p  transcript_id AT2G31930.1  
At2g31940	chr2:013580600	0.0	W/13580600-13580962	AT2G31940.1  CDS  gene_syn F20M17.26  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19875.1); Has 68 Blast hits to 68 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31940.1p  transcript_id AT2G31940.1  protein_id AT2G31940.1p  transcript_id AT2G31940.1  
At2g31945	chr2:013581691	0.0	W/13581691-13581978	AT2G31945.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05575.1); Has 34 Blast hits to 34 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31945.1p  transcript_id AT2G31945.1  protein_id AT2G31945.1p  transcript_id AT2G31945.1  
At2g31953	chr2:013583430	0.0	W/13583430-13583493,13583824-13584020	AT2G31953.1  CDS  gene_syn LCR76, Low-molecular-weight cysteine-rich 76  gene LCR76  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||IEA  product LCR76 (Low-molecular-weight cysteine-rich 76)  note Low-molecular-weight cysteine-rich 76 (LCR76); INVOLVED IN: defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: LCR75 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 75) (TAIR:AT2G31957.1); Has 236 Blast hits to 236 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 236; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31953.1p  transcript_id AT2G31953.1  protein_id AT2G31953.1p  transcript_id AT2G31953.1  
At2g31955	chr2:013586419	0.0	C/13586419-13586484,13585614-13586207,13585349-13585516,13585062-13585253,13584819-13584887,13584635-13584718	AT2G31955.1  CDS  gene_syn AT2G31950, CNX2, COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2, F22D22.30, F22D22_30  gene CNX2  function COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2. Encodes a protein involved in molybdenum cofactor biosynthesis. Homologous to E.coli moaA. Expression is abundant in all tissues examined, particularly in roots. Appears to have targeting signals for chloroplast or mitochondria.  go_component mitochondrion|GO:0005739|7890743|ISS  go_component chloroplast|GO:0009507|7890743|ISS  go_process Mo-molybdopterin cofactor biosynthetic process|GO:0006777|7890743|IGI  go_function catalytic activity|GO:0003824|7890743|IGI  product CNX2 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2); catalytic  note COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2 (CNX2); FUNCTIONS IN: catalytic activity; INVOLVED IN: Mo-molybdopterin cofactor biosynthetic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molybdenum cofactor synthesis C-terminal (InterPro:IPR010505), Aldolase-type TIM barrel (InterPro:IPR013785), Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Molybdenum cofactor biosynthesis protein A (InterPro:IPR013483), Radical SAM (InterPro:IPR007197), MoaA/nifB/pqqE, iron-sulphur binding, conserved site (InterPro:IPR000385); Has 6518 Blast hits to 6518 proteins in 1188 species: Archae - 530; Bacteria - 3873; Metazoa - 132; Fungi - 47; Plants - 31; Viruses - 0; Other Eukaryotes - 1905 (source: NCBI BLink).  protein_id AT2G31955.1p  transcript_id AT2G31955.1  protein_id AT2G31955.1p  transcript_id AT2G31955.1  
At2g31955	chr2:013586419	0.0	C/13586419-13586484,13585614-13586207,13585349-13585516,13585062-13585253,13584819-13584887,13584635-13584718	AT2G31955.2  CDS  gene_syn AT2G31950, CNX2, COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2, F22D22.30, F22D22_30  gene CNX2  function COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2. Encodes a protein involved in molybdenum cofactor biosynthesis. Homologous to E.coli moaA. Expression is abundant in all tissues examined, particularly in roots. Appears to have targeting signals for chloroplast or mitochondria.  go_component mitochondrion|GO:0005739|7890743|ISS  go_component chloroplast|GO:0009507|7890743|ISS  go_process Mo-molybdopterin cofactor biosynthetic process|GO:0006777|7890743|IGI  go_function catalytic activity|GO:0003824|7890743|IGI  product CNX2 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2); catalytic  note COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2 (CNX2); FUNCTIONS IN: catalytic activity; INVOLVED IN: Mo-molybdopterin cofactor biosynthetic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molybdenum cofactor synthesis C-terminal (InterPro:IPR010505), Aldolase-type TIM barrel (InterPro:IPR013785), Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Molybdenum cofactor biosynthesis protein A (InterPro:IPR013483), Radical SAM (InterPro:IPR007197), MoaA/nifB/pqqE, iron-sulphur binding, conserved site (InterPro:IPR000385); Has 6518 Blast hits to 6518 proteins in 1188 species: Archae - 530; Bacteria - 3873; Metazoa - 132; Fungi - 47; Plants - 31; Viruses - 0; Other Eukaryotes - 1905 (source: NCBI BLink).  protein_id AT2G31955.2p  transcript_id AT2G31955.2  protein_id AT2G31955.2p  transcript_id AT2G31955.2  
At2g31957	chr2:013587709	0.0	W/13587709-13587781,13588012-13588187	AT2G31957.1  CDS  gene_syn LCR75, LCR79, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 75, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 79  gene LCR75  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||IEA  product LCR75 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 75)  note LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 75 (LCR75); INVOLVED IN: defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Gamma Purothionin (InterPro:IPR008177), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: LCR76 (Low-molecular-weight cysteine-rich 76) (TAIR:AT2G31953.1); Has 272 Blast hits to 272 proteins in 69 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 272; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31957.1p  transcript_id AT2G31957.1  protein_id AT2G31957.1p  transcript_id AT2G31957.1  
At2g31960	chr2:013589545	0.0	W/13589545-13589731,13589823-13589923,13590028-13590149,13590234-13590327,13590512-13590622,13590705-13590821,13590906-13590998,13591093-13591184,13591320-13591446,13591704-13591841,13591942-13592018,13592108-13592201,13592486-13592605,13592683-13592800,13593016-13593353,13593443-13593495,13593585-13593645,13593787-13593871,13593958-13594031,13594083-13594169,13594283-13594420,13594556-13594650,13594752-13594836,13594918-13595078,13595172-13595295,13595384-13595481,13595567-13595696,13595820-13595971,13596117-13596226,13596321-13596446,13596531-13596599,13596687-13596880,13596968-13597123,13597332-13597451,13597552-13597670,13597763-13597846,13597925-13598037,13598131-13598360,13598458-13599258,13599344-13599394,13599513-13599698,13599818-13600066	AT2G31960.1  CDS  gene_syn ATGSL03, ATGSL3, F22D22.29, F22D22_29, GLUCAN SYNTHASE-LIKE 3, GSL03  gene ATGSL03  function encodes a protein similar to callose synthase  go_component plasma membrane|GO:0005886|17317660|IDA  go_process 1,3-beta-glucan biosynthetic process|GO:0006075||IEA  go_component 1,3-beta-glucan synthase complex|GO:0000148||ISS  go_process 1,3-beta-glucan biosynthetic process|GO:0006075||ISS  go_function 1,3-beta-glucan synthase activity|GO:0003843||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product ATGSL03 (GLUCAN SYNTHASE-LIKE 3); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups  note GLUCAN SYNTHASE-LIKE 3 (ATGSL03); FUNCTIONS IN: transferase activity, transferring glycosyl groups, 1,3-beta-glucan synthase activity; INVOLVED IN: 1,3-beta-glucan biosynthetic process; LOCATED IN: 1,3-beta-glucan synthase complex, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 48 (InterPro:IPR003440); BEST Arabidopsis thaliana protein match is: CALS1 (CALLOSE SYNTHASE 1); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups (TAIR:AT1G05570.1); Has 908 Blast hits to 680 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 57; Fungi - 532; Plants - 288; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT2G31960.1p  transcript_id AT2G31960.1  protein_id AT2G31960.1p  transcript_id AT2G31960.1  
At2g31970	chr2:013600657	0.0	W/13600657-13600779,13600876-13600962,13601094-13601261,13601578-13601753,13601868-13601982,13602206-13602434,13602616-13602794,13602882-13603052,13603144-13603248,13603338-13603445,13603545-13603756,13603843-13603935,13604101-13604228,13604508-13604622,13604742-13604871,13604980-13605189,13605386-13605594,13605706-13605907,13606492-13606661,13606733-13607057,13607438-13607563,13607649-13607701,13607812-13607962,13608038-13608100,13608211-13608344,13608547-13608675,13608776-13608815	AT2G31970.1  CDS  gene_syn ATRAD50, DNA REPAIR-RECOMBINATION PROTEIN, F22D22.28, F22D22_28, RAD50  gene RAD50  go_component chromosome|GO:0005694||IEA  go_component Mre11 complex|GO:0030870||IEA  go_process DNA repair|GO:0006281||IEA  go_function nuclease activity|GO:0004518||IEA  go_function ATP binding|GO:0005524||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process DNA repair|GO:0006281||ISS  product RAD50; ATP binding / nuclease/ zinc ion binding  note RAD50; FUNCTIONS IN: zinc ion binding, ATP binding, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: chromosome, Mre11 complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc hook, Rad50 (InterPro:IPR013134), Rad50 zinc hook (InterPro:IPR007517), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395), Recombination/repair protein Rad50 (InterPro:IPR004584); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27595.1); Has 83241 Blast hits to 43267 proteins in 1813 species: Archae - 1109; Bacteria - 10221; Metazoa - 39962; Fungi - 5795; Plants - 2652; Viruses - 436; Other Eukaryotes - 23066 (source: NCBI BLink).  protein_id AT2G31970.1p  transcript_id AT2G31970.1  protein_id AT2G31970.1p  transcript_id AT2G31970.1  
At2g31980	chr2:013609604	0.0	C/13609604-13609770,13609246-13609522	AT2G31980.1  CDS  gene_syn F22D22.27, F22D22_27  go_component endomembrane system|GO:0012505||IEA  go_function cysteine-type endopeptidase inhibitor activity|GO:0004869||IEA  go_process biological_process|GO:0008150||ND  product cysteine proteinase inhibitor-related  note cysteine proteinase inhibitor-related; FUNCTIONS IN: cysteine-type endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I25, cystatin, conserved site (InterPro:IPR018073), Proteinase inhibitor I25, cystatin (InterPro:IPR000010); BEST Arabidopsis thaliana protein match is: cysteine protease inhibitor, putative / cystatin, putative (TAIR:AT3G12490.2); Has 396 Blast hits to 391 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 386; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G31980.1p  transcript_id AT2G31980.1  protein_id AT2G31980.1p  transcript_id AT2G31980.1  
At2g31981	chr2:013609981	0.0	W/13609981-13610094	AT2G31981.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G31981.1p  transcript_id AT2G31981.1  protein_id AT2G31981.1p  transcript_id AT2G31981.1  
At2g31990	chr2:013612945	0.0	C/13612945-13613551,13611500-13612332	AT2G31990.1  CDS  gene_syn F22D22.26, F22D22_26  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product exostosin family protein  note exostosin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: exostosin family protein (TAIR:AT2G29040.1); Has 336 Blast hits to 335 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 4; Plants - 312; Viruses - 2; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT2G31990.1p  transcript_id AT2G31990.1  protein_id AT2G31990.1p  transcript_id AT2G31990.1  
At2g31985	chr2:013615474	0.0	C/13615474-13615619,13614781-13615184,13614086-13614261	AT2G31985.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1264 (InterPro:IPR010686); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05510.1); Has 189 Blast hits to 189 proteins in 83 species: Archae - 0; Bacteria - 85; Metazoa - 0; Fungi - 43; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G31985.1p  transcript_id AT2G31985.1  protein_id AT2G31985.1p  transcript_id AT2G31985.1  
At2g32000	chr2:013621390	0.0	C/13621390-13621397,13621015-13621118,13620664-13620752,13620398-13620497,13619801-13620044,13619056-13619218,13618838-13618957,13618403-13618482,13617867-13618145,13617604-13617772,13617352-13617480,13617013-13617225,13616727-13616906,13615999-13616637	AT2G32000.2  CDS  gene_syn F22D22.25, F22D22_25  go_component chromosome|GO:0005694||IEA  go_component endomembrane system|GO:0012505||IEA  go_process DNA metabolic process|GO:0006259||IEA  go_process DNA topological change|GO:0006265||IEA  go_process DNA unwinding during replication|GO:0006268||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA topoisomerase activity|GO:0003916||IEA  go_function DNA topoisomerase type I activity|GO:0003917||IEA  go_process DNA topological change|GO:0006265||ISS  go_process DNA unwinding during replication|GO:0006268||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA topoisomerase type I activity|GO:0003917||ISS  product DNA topoisomerase family protein  note DNA topoisomerase family protein; FUNCTIONS IN: DNA topoisomerase activity, DNA topoisomerase type I activity, DNA binding, nucleic acid binding; INVOLVED IN: DNA topological change, DNA unwinding during replication, DNA metabolic process; LOCATED IN: endomembrane system, chromosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Toprim subdomain (InterPro:IPR006154), DNA topoisomerase, type IA, central region, subdomain 1 (InterPro:IPR013824), DNA topoisomerase, type IA, core (InterPro:IPR000380), TOPRIM (InterPro:IPR006171), DNA topoisomerase, type IA, DNA-binding (InterPro:IPR003602), DNA topoisomerase, type IA, domain 2 (InterPro:IPR003601), DNA topoisomerase, type IA, central (InterPro:IPR013497), DNA topoisomerase, type IA, central region, subdomain 3 (InterPro:IPR013826); BEST Arabidopsis thaliana protein match is: DNA topoisomerase III alpha, putative (TAIR:AT5G63920.1); Has 8215 Blast hits to 8170 proteins in 1621 species: Archae - 233; Bacteria - 4375; Metazoa - 255; Fungi - 90; Plants - 64; Viruses - 3; Other Eukaryotes - 3195 (source: NCBI BLink).  protein_id AT2G32000.2p  transcript_id AT2G32000.2  protein_id AT2G32000.2p  transcript_id AT2G32000.2  
At2g32000	chr2:013621537	0.0	C/13621537-13621563,13621390-13621446,13621015-13621118,13620664-13620757,13620398-13620497,13619801-13620044,13619056-13619218,13618838-13618957,13618403-13618482,13617867-13618145,13617604-13617772,13617352-13617480,13617013-13617225,13616727-13616906,13615999-13616637	AT2G32000.1  CDS  gene_syn F22D22.25, F22D22_25  go_component chromosome|GO:0005694||IEA  go_component endomembrane system|GO:0012505||IEA  go_process DNA metabolic process|GO:0006259||IEA  go_process DNA topological change|GO:0006265||IEA  go_process DNA unwinding during replication|GO:0006268||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA topoisomerase activity|GO:0003916||IEA  go_function DNA topoisomerase type I activity|GO:0003917||IEA  go_process DNA topological change|GO:0006265||ISS  go_process DNA unwinding during replication|GO:0006268||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA topoisomerase type I activity|GO:0003917||ISS  product DNA topoisomerase family protein  note DNA topoisomerase family protein; FUNCTIONS IN: DNA topoisomerase activity, DNA topoisomerase type I activity, DNA binding, nucleic acid binding; INVOLVED IN: DNA topological change, DNA unwinding during replication, DNA metabolic process; LOCATED IN: endomembrane system, chromosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase, type IA, core (InterPro:IPR000380), DNA topoisomerase, type IA, DNA-binding (InterPro:IPR003602), DNA topoisomerase, type IA, domain 2 (InterPro:IPR003601), DNA topoisomerase, type IA, central (InterPro:IPR013497), DNA topoisomerase, type IA, central region, subdomain 3 (InterPro:IPR013826), Toprim subdomain (InterPro:IPR006154), DNA topoisomerase, type IA, central region, subdomain 1 (InterPro:IPR013824), TOPRIM (InterPro:IPR006171); BEST Arabidopsis thaliana protein match is: DNA topoisomerase III alpha, putative (TAIR:AT5G63920.1); Has 8363 Blast hits to 8313 proteins in 1624 species: Archae - 255; Bacteria - 4404; Metazoa - 258; Fungi - 90; Plants - 68; Viruses - 3; Other Eukaryotes - 3285 (source: NCBI BLink).  protein_id AT2G32000.1p  transcript_id AT2G32000.1  protein_id AT2G32000.1p  transcript_id AT2G32000.1  
At2g32010	chr2:013625344	0.0	W/13625344-13625373,13625470-13625557,13625803-13625871,13625953-13626040,13626134-13626238,13626312-13627041,13627124-13627317,13627416-13627524,13627630-13627778,13627859-13628081	AT2G32010.1  CDS  gene_syn F22D22.24, F22D22_24  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product endonuclease/exonuclease/phosphatase family protein  note endonuclease/exonuclease/phosphatase family protein; FUNCTIONS IN: hydrolase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: CVP2 (COTYLEDON VASCULAR PATTERN 2); hydrolase/ inositol trisphosphate phosphatase (TAIR:AT1G05470.1); Has 1627 Blast hits to 1374 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 679; Fungi - 408; Plants - 314; Viruses - 0; Other Eukaryotes - 226 (source: NCBI BLink).  protein_id AT2G32010.1p  transcript_id AT2G32010.1  protein_id AT2G32010.1p  transcript_id AT2G32010.1  
At2g32020	chr2:013631193	0.0	C/13631193-13631744	AT2G32020.1  CDS  gene_syn F22D22.23, F22D22_23  go_function N-acetyltransferase activity|GO:0008080||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_process response to abscisic acid stimulus|GO:0009737|16258012|IEP  go_function N-acetyltransferase activity|GO:0008080||ISS  product GCN5-related N-acetyltransferase (GNAT) family protein  note GCN5-related N-acetyltransferase (GNAT) family protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: response to abscisic acid stimulus, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, cotyledon, hypocotyl, root, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: GCN5-related N-acetyltransferase (GNAT) family protein (TAIR:AT2G32030.1); Has 5194 Blast hits to 5189 proteins in 878 species: Archae - 65; Bacteria - 4464; Metazoa - 1; Fungi - 93; Plants - 71; Viruses - 2; Other Eukaryotes - 498 (source: NCBI BLink).  protein_id AT2G32020.1p  transcript_id AT2G32020.1  protein_id AT2G32020.1p  transcript_id AT2G32020.1  
At2g32030	chr2:013632675	0.0	C/13632675-13633241	AT2G32030.1  CDS  gene_syn F22D22.22, F22D22_22  go_process metabolic process|GO:0008152||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product GCN5-related N-acetyltransferase (GNAT) family protein  note GCN5-related N-acetyltransferase (GNAT) family protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: GCN5-related N-acetyltransferase (GNAT) family protein (TAIR:AT2G32020.1); Has 4823 Blast hits to 4819 proteins in 889 species: Archae - 62; Bacteria - 4169; Metazoa - 1; Fungi - 73; Plants - 71; Viruses - 2; Other Eukaryotes - 445 (source: NCBI BLink).  protein_id AT2G32030.1p  transcript_id AT2G32030.1  protein_id AT2G32030.1p  transcript_id AT2G32030.1  
At2g32040	chr2:013635116	0.0	W/13635116-13635347,13635456-13635706,13635786-13635850,13635922-13636084,13636184-13636332,13636434-13636694,13636808-13636976,13637070-13637162,13637293-13637592	AT2G32040.1  CDS  gene_syn F22D22.21, F22D22_21  function The At2g32040 gene product has been demonstrated to mediate folate monoglutamate transport involved in tetrahydrofolate biosynthesis. It also mediates transport of antifolates, such as methotrexate and aminopterin. The gene is expressed in both chloroplast and non-green plastids.  go_component chloroplast envelope|GO:0009941|16162503|IDA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  go_function folic acid transporter activity|GO:0008517|16162503|IDA  go_function 5-formyltetrahydrofolate transporter activity|GO:0015231|16162503|IDA  product integral membrane transporter family protein  note integral membrane transporter family protein; FUNCTIONS IN: folic acid transporter activity, transporter activity, 5-formyltetrahydrofolate transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast envelope, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily, general substrate transporter (InterPro:IPR016196), Biopterin transport-related protein BT1 (InterPro:IPR004324); BEST Arabidopsis thaliana protein match is: integral membrane transporter family protein (TAIR:AT5G54860.1); Has 1436 Blast hits to 1344 proteins in 248 species: Archae - 2; Bacteria - 352; Metazoa - 3; Fungi - 23; Plants - 150; Viruses - 0; Other Eukaryotes - 906 (source: NCBI BLink).  protein_id AT2G32040.1p  transcript_id AT2G32040.1  protein_id AT2G32040.1p  transcript_id AT2G32040.1  
At2g32050	chr2:013637879	0.0	C/13637879-13638643	AT2G32050.1  CDS  gene_syn F22D22.20, F22D22_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product cell cycle control protein-related  note cell cycle control protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF572 (InterPro:IPR007590); BEST Arabidopsis thaliana protein match is: cell cycle control protein-related (TAIR:AT3G43250.1); Has 574 Blast hits to 570 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 275; Fungi - 132; Plants - 52; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).  protein_id AT2G32050.1p  transcript_id AT2G32050.1  protein_id AT2G32050.1p  transcript_id AT2G32050.1  
At2g32060	chr2:013640097	0.0	C/13640097-13640104,13639562-13639862,13639408-13639473,13639228-13639287	AT2G32060.1  CDS  gene_syn F22D22.19, F22D22_19  go_component nucleus|GO:0005634|14617066|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S12 (RPS12C)  note 40S ribosomal protein S12 (RPS12C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S12e (InterPro:IPR000530), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S12 (RPS12A) (TAIR:AT1G15930.2); Has 682 Blast hits to 682 proteins in 239 species: Archae - 118; Bacteria - 0; Metazoa - 255; Fungi - 114; Plants - 63; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).  protein_id AT2G32060.1p  transcript_id AT2G32060.1  protein_id AT2G32060.1p  transcript_id AT2G32060.1  
At2g32060	chr2:013640097	0.0	C/13640097-13640104,13639562-13639862,13639408-13639473,13639228-13639287	AT2G32060.2  CDS  gene_syn F22D22.19, F22D22_19  go_component nucleus|GO:0005634|14617066|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S12 (RPS12C)  note 40S ribosomal protein S12 (RPS12C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S12e (InterPro:IPR000530), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S12 (RPS12A) (TAIR:AT1G15930.2); Has 682 Blast hits to 682 proteins in 239 species: Archae - 118; Bacteria - 0; Metazoa - 255; Fungi - 114; Plants - 63; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).  protein_id AT2G32060.2p  transcript_id AT2G32060.2  protein_id AT2G32060.2p  transcript_id AT2G32060.2  
At2g32060	chr2:013640097	0.0	C/13640097-13640104,13639562-13639862,13639408-13639473,13639228-13639287	AT2G32060.3  CDS  gene_syn F22D22.19, F22D22_19  go_component nucleus|GO:0005634|14617066|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S12 (RPS12C)  note 40S ribosomal protein S12 (RPS12C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S12e (InterPro:IPR000530), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S12 (RPS12A) (TAIR:AT1G15930.2); Has 682 Blast hits to 682 proteins in 239 species: Archae - 118; Bacteria - 0; Metazoa - 255; Fungi - 114; Plants - 63; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).  protein_id AT2G32060.3p  transcript_id AT2G32060.3  protein_id AT2G32060.3p  transcript_id AT2G32060.3  
At2g32070	chr2:013640829	0.0	C/13640829-13641656	AT2G32070.1  CDS  gene_syn F22D22.18, F22D22_18  go_component nucleus|GO:0005634||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process RNA modification|GO:0009451||ISS  go_function ribonuclease activity|GO:0004540||ISS  product CCR4-NOT transcription complex protein, putative  note CCR4-NOT transcription complex protein, putative; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: CCR4-NOT transcription complex protein, putative (TAIR:AT1G80780.2); Has 654 Blast hits to 646 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 243; Fungi - 94; Plants - 219; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT2G32070.1p  transcript_id AT2G32070.1  protein_id AT2G32070.1p  transcript_id AT2G32070.1  
At2g32080	chr2:013643725	0.0	C/13643725-13644036,13643595-13643642,13643267-13643410,13642958-13643191,13642716-13642868	AT2G32080.1  CDS  gene_syn F22D22.17, F22D22_17, PUR ALPHA-1  gene PUR ALPHA-1  function similar to the conserved animal nuclear protein PUR alpha which was implicated in the control of gene transcription and DNA replication  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytoplasm|GO:0005737|15610358|IDA  go_function nucleic acid binding|GO:0003676||ISS  product PUR ALPHA-1; nucleic acid binding  note PUR ALPHA-1; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PUR-alpha/beta/gamma, DNA/RNA-binding (InterPro:IPR006628); Has 455 Blast hits to 264 proteins in 56 species: Archae - 0; Bacteria - 31; Metazoa - 340; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT2G32080.1p  transcript_id AT2G32080.1  protein_id AT2G32080.1p  transcript_id AT2G32080.1  
At2g32080	chr2:013643725	0.0	C/13643725-13644036,13643595-13643642,13643270-13643410,13642958-13643191,13642716-13642868	AT2G32080.2  CDS  gene_syn F22D22.17, F22D22_17, PUR ALPHA-1  gene PUR ALPHA-1  function similar to the conserved animal nuclear protein PUR alpha which was implicated in the control of gene transcription and DNA replication  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytoplasm|GO:0005737|15610358|IDA  go_function nucleic acid binding|GO:0003676||ISS  product PUR ALPHA-1; nucleic acid binding  note PUR ALPHA-1; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PUR-alpha/beta/gamma, DNA/RNA-binding (InterPro:IPR006628); Has 454 Blast hits to 263 proteins in 56 species: Archae - 0; Bacteria - 31; Metazoa - 340; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT2G32080.2p  transcript_id AT2G32080.2  protein_id AT2G32080.2p  transcript_id AT2G32080.2  
At2g32090	chr2:013644500	0.0	W/13644500-13644568,13644921-13645151,13645263-13645338,13645577-13645608	AT2G32090.1  CDS  gene_syn F22D22.16, F22D22_16  go_component cellular_component|GO:0005575||ND  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function lactoylglutathione lyase activity|GO:0004462||ISS  product lactoylglutathione lyase family protein / glyoxalase I family protein  note lactoylglutathione lyase family protein / glyoxalase I family protein; FUNCTIONS IN: lactoylglutathione lyase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: lactoylglutathione lyase family protein / glyoxalase I family protein (TAIR:AT2G28420.1); Has 357 Blast hits to 357 proteins in 121 species: Archae - 2; Bacteria - 185; Metazoa - 7; Fungi - 21; Plants - 90; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT2G32090.1p  transcript_id AT2G32090.1  protein_id AT2G32090.1p  transcript_id AT2G32090.1  
At2g32090	chr2:013644720	0.0	W/13644720-13644722,13644921-13645151,13645263-13645338,13645577-13645608	AT2G32090.2  CDS  gene_syn F22D22.16, F22D22_16  go_component cellular_component|GO:0005575||ND  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function lactoylglutathione lyase activity|GO:0004462||ISS  product lactoylglutathione lyase family protein / glyoxalase I family protein  note lactoylglutathione lyase family protein / glyoxalase I family protein; FUNCTIONS IN: lactoylglutathione lyase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: lactoylglutathione lyase family protein / glyoxalase I family protein (TAIR:AT2G28420.1); Has 73 Blast hits to 73 proteins in 16 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 3; Plants - 54; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G32090.2p  transcript_id AT2G32090.2  protein_id AT2G32090.2p  transcript_id AT2G32090.2  
At2g32100	chr2:013647852	0.0	W/13647852-13648586	AT2G32100.1  CDS  gene_syn ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16, ATOFP16, F22D22.15, F22D22_15, OFP16, RABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16  gene OFP16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16)  note ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16 (OFP16); INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623, plant (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: OFP12 (OVATE FAMILY PROTEIN 12) (TAIR:AT1G05420.1); Has 121 Blast hits to 121 proteins in 8 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 119; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G32100.1p  transcript_id AT2G32100.1  protein_id AT2G32100.1p  transcript_id AT2G32100.1  
At2g32110	chr2:013651274	0.0	W/13651274-13651348	AT2G32110.1  tRNA  gene_syn 49198.TRNA-ASN-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asn (anticodon: GTT)  transcript_id AT2G32110.1  
At2g32120	chr2:013651720	0.0	C/13651720-13653411	AT2G32120.1  CDS  gene_syn F22D22.13, F22D22_13, HEAT-SHOCK PROTEIN 70T-2, HSP70T-2  gene HSP70T-2  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457|11402207|TAS  go_process response to heat|GO:0009408|11402207|IEP  go_process response to heat|GO:0009408|17059409|IEP  go_process response to high light intensity|GO:0009644|17059409|IEP  go_process response to hydrogen peroxide|GO:0042542|17059409|IEP  product HSP70T-2 (HEAT-SHOCK PROTEIN 70T-2); ATP binding  note HEAT-SHOCK PROTEIN 70T-2 (HSP70T-2); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to high light intensity, response to hydrogen peroxide, response to heat; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: HSP70 (heat shock protein 70); ATP binding (TAIR:AT3G12580.1); Has 17575 Blast hits to 17507 proteins in 2827 species: Archae - 97; Bacteria - 6191; Metazoa - 2705; Fungi - 988; Plants - 616; Viruses - 89; Other Eukaryotes - 6889 (source: NCBI BLink).  protein_id AT2G32120.1p  transcript_id AT2G32120.1  protein_id AT2G32120.1p  transcript_id AT2G32120.1  
At2g32120	chr2:013651720	0.0	C/13651720-13653411	AT2G32120.2  CDS  gene_syn F22D22.13, F22D22_13, HEAT-SHOCK PROTEIN 70T-2, HSP70T-2  gene HSP70T-2  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457|11402207|TAS  go_process response to heat|GO:0009408|11402207|IEP  go_process response to heat|GO:0009408|17059409|IEP  go_process response to high light intensity|GO:0009644|17059409|IEP  go_process response to hydrogen peroxide|GO:0042542|17059409|IEP  product HSP70T-2 (HEAT-SHOCK PROTEIN 70T-2); ATP binding  note HEAT-SHOCK PROTEIN 70T-2 (HSP70T-2); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to high light intensity, response to hydrogen peroxide, response to heat; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: HSP70 (heat shock protein 70); ATP binding (TAIR:AT3G12580.1); Has 17575 Blast hits to 17507 proteins in 2827 species: Archae - 97; Bacteria - 6191; Metazoa - 2705; Fungi - 988; Plants - 616; Viruses - 89; Other Eukaryotes - 6889 (source: NCBI BLink).  protein_id AT2G32120.2p  transcript_id AT2G32120.2  protein_id AT2G32120.2p  transcript_id AT2G32120.2  
At2g32130	chr2:013654996	0.0	C/13654996-13655469	AT2G32130.1  CDS  gene_syn F22D22.12, F22D22_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF641, plant (InterPro:IPR006943); BEST Arabidopsis thaliana protein match is: UNE1 (unfertilized embryo sac 1) (TAIR:AT1G29300.1); Has 108 Blast hits to 108 proteins in 15 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G32130.1p  transcript_id AT2G32130.1  protein_id AT2G32130.1p  transcript_id AT2G32130.1  
At2g32140	chr2:013656534	0.0	C/13656534-13657033,13656263-13656421,13655714-13656116	AT2G32140.1  CDS  gene_syn F22D22.11, F22D22_11  go_component chloroplast|GO:0009507||IEA  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_process defense response|GO:0006952||ISS  product transmembrane receptor  note transmembrane receptor; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane, chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF641, plant (InterPro:IPR006943), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: ATPP2-A5 (ARABIDOPSIS THALIANA PHLOEM PROTEIN 2 A5); carbohydrate binding (TAIR:AT1G65390.2); Has 874 Blast hits to 826 proteins in 44 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 865; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G32140.1p  transcript_id AT2G32140.1  protein_id AT2G32140.1p  transcript_id AT2G32140.1  
At2g32150	chr2:013659095	0.0	W/13659095-13659128,13659227-13659292,13659381-13659478,13659569-13659606,13659706-13659793,13659888-13660100,13660184-13660249,13660343-13660531	AT2G32150.1  CDS  gene_syn F22D22.10, F22D22_10  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity|GO:0016787||ISS  product haloacid dehalogenase-like hydrolase family protein  note haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Pyrimidine 5-nucleotidase (InterPro:IPR010237), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: haloacid dehalogenase-like hydrolase family protein (TAIR:AT5G02230.2); Has 1907 Blast hits to 1906 proteins in 321 species: Archae - 7; Bacteria - 449; Metazoa - 2; Fungi - 104; Plants - 108; Viruses - 0; Other Eukaryotes - 1237 (source: NCBI BLink).  protein_id AT2G32150.1p  transcript_id AT2G32150.1  protein_id AT2G32150.1p  transcript_id AT2G32150.1  
At2g32160	chr2:013662238	0.0	W/13662238-13662425,13662763-13662835,13663025-13663068,13663384-13663426,13663537-13663605,13663673-13663786,13663866-13663937,13664216-13664260,13664359-13664438,13664581-13664648,13664746-13664812,13664985-13665098,13665260-13665333,13665418-13665515,13665603-13665662,13665747-13665815,13665926-13665979,13666074-13666133	AT2G32160.3  CDS  gene_syn F22D22.9, F22D22_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: N2227-like (InterPro:IPR012901); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32170.1); Has 328 Blast hits to 321 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 99; Fungi - 132; Plants - 25; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT2G32160.3p  transcript_id AT2G32160.3  protein_id AT2G32160.3p  transcript_id AT2G32160.3  
At2g32160	chr2:013662238	0.0	W/13662238-13662425,13662763-13662835,13663025-13663068,13663384-13663426,13663537-13663605,13663673-13663786,13663908-13663937,13664216-13664260,13664359-13664438,13664581-13664648,13664746-13664812,13664985-13665098,13665260-13665333,13665418-13665515,13665603-13665662,13665747-13665815,13665926-13665979,13666074-13666133	AT2G32160.2  CDS  gene_syn F22D22.9, F22D22_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: N2227-like (InterPro:IPR012901); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32170.1); Has 327 Blast hits to 317 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 130; Plants - 30; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT2G32160.2p  transcript_id AT2G32160.2  protein_id AT2G32160.2p  transcript_id AT2G32160.2  
At2g32160	chr2:013662238	0.0	W/13662238-13662425,13662763-13662835,13663025-13663068,13663384-13663426,13663537-13663605,13663673-13663786,13663908-13663937,13664216-13664260,13664359-13664438,13664581-13664648,13664746-13664812,13664985-13665098,13665260-13665333,13665418-13665515,13665603-13665662,13665747-13665815,13665930-13665941	AT2G32160.1  CDS  gene_syn F22D22.9, F22D22_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: N2227-like (InterPro:IPR012901); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32170.1); Has 325 Blast hits to 315 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 130; Plants - 30; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT2G32160.1p  transcript_id AT2G32160.1  protein_id AT2G32160.1p  transcript_id AT2G32160.1  
At2g32170	chr2:013666476	0.0	W/13666476-13666657,13666865-13666937,13667106-13667149,13667475-13667517,13667671-13667865,13667933-13668049,13668349-13668420,13668513-13668665,13668795-13668839,13668949-13669028,13669153-13669268,13669345-13669411,13669743-13669856,13670060-13670133,13670218-13670315,13670415-13670474,13670549-13670617,13670709-13670762,13670865-13670924	AT2G32170.2  CDS  gene_syn F22D22.8, F22D22_8  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: N2227-like (InterPro:IPR012901); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32160.3).  protein_id AT2G32170.2p  transcript_id AT2G32170.2  protein_id AT2G32170.2p  transcript_id AT2G32170.2  
At2g32170	chr2:013666476	0.0	W/13666476-13666657,13666865-13666937,13667106-13667149,13667475-13667517,13667671-13667865,13667933-13668049,13668349-13668420,13668795-13668839,13668949-13669028,13669201-13669268,13669345-13669411,13669743-13669856,13670060-13670133,13670218-13670315,13670415-13670474,13670549-13670617,13670709-13670762,13670865-13670924	AT2G32170.1  CDS  gene_syn F22D22.8, F22D22_8  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: N2227-like (InterPro:IPR012901); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32160.3); Has 362 Blast hits to 319 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 130; Plants - 25; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT2G32170.1p  transcript_id AT2G32170.1  protein_id AT2G32170.1p  transcript_id AT2G32170.1  
At2g32179	chr2:013671841	0.0	W/13671841-13673376	AT2G32179.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G32180  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G32179.1  
At2g32180	chr2:013672362	0.0	C/13672362-13672781	AT2G32180.1  CDS  gene_syn F22D22.7, F22D22_7, PLASTID TRANSCRIPTIONALLY ACTIVE 18, PTAC18  gene PTAC18  go_component nucleoid|GO:0009295|16326926|IDA  go_component plastid chromosome|GO:0009508|16326926|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product PTAC18 (PLASTID TRANSCRIPTIONALLY ACTIVE 18)  note PLASTID TRANSCRIPTIONALLY ACTIVE 18 (PTAC18); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plastid chromosome, nucleoid; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Protein of unknown function DUF861, cupin-3 (InterPro:IPR008579), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32650.2); Has 169 Blast hits to 169 proteins in 46 species: Archae - 0; Bacteria - 71; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT2G32180.1p  transcript_id AT2G32180.1  protein_id AT2G32180.1p  transcript_id AT2G32180.1  
At2g32190	chr2:013674588	0.0	W/13674588-13674618,13674737-13674875,13675047-13675092	AT2G32190.1  CDS  gene_syn F22D22.6, F22D22_6  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32210.1); Has 138 Blast hits to 138 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 12; Plants - 126; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G32190.1p  transcript_id AT2G32190.1  protein_id AT2G32190.1p  transcript_id AT2G32190.1  
At2g32190	chr2:013674588	0.0	W/13674588-13674618,13674737-13674906	AT2G32190.2  CDS  gene_syn F22D22.6, F22D22_6  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32210.1); Has 40 Blast hits to 40 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G32190.2p  transcript_id AT2G32190.2  protein_id AT2G32190.2p  transcript_id AT2G32190.2  
At2g32200	chr2:013676554	0.0	W/13676554-13676584,13676713-13676860,13676991-13677039	AT2G32200.1  CDS  gene_syn F22D22.5, F22D22_5  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32210.1); Has 86 Blast hits to 86 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 1; Plants - 85; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G32200.1p  transcript_id AT2G32200.1  protein_id AT2G32200.1p  transcript_id AT2G32200.1  
At2g32210	chr2:013678077	0.0	W/13678077-13678107,13678255-13678393,13678509-13678554	AT2G32210.1  CDS  gene_syn F22D22.4, F22D22_4  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32190.1); Has 134 Blast hits to 134 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 8; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G32210.1p  transcript_id AT2G32210.1  protein_id AT2G32210.1p  transcript_id AT2G32210.1  
At2g32220	chr2:013678945	0.0	W/13678945-13679352	AT2G32220.1  CDS  gene_syn F22D22.3, F22D22_3  go_component membrane|GO:0016020|17432890|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component intracellular|GO:0005622||ISS  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L27 (RPL27A)  note 60S ribosomal protein L27 (RPL27A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, ribosome, intracellular, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L27e, conserved site (InterPro:IPR018262), Ribosomal protein L27e (InterPro:IPR001141); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L27 (RPL27B) (TAIR:AT3G22230.1); Has 606 Blast hits to 606 proteins in 230 species: Archae - 0; Bacteria - 0; Metazoa - 293; Fungi - 102; Plants - 95; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT2G32220.1p  transcript_id AT2G32220.1  protein_id AT2G32220.1p  transcript_id AT2G32220.1  
At2g32230	chr2:013680602	0.0	C/13680602-13681756,13680431-13680520,13680158-13680339,13679938-13680058,13679792-13679863,13679608-13679706	AT2G32230.1  CDS  gene_syn F22D22.2, F22D22_2  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: antiporter activity, drug transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: antiporter/ drug transporter (TAIR:AT2G16650.1); Has 1123 Blast hits to 882 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 98; Fungi - 2; Plants - 952; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT2G32230.1p  transcript_id AT2G32230.1  protein_id AT2G32230.1p  transcript_id AT2G32230.1  
At2g32235	chr2:013683546	0.0	C/13683546-13684199,13683230-13683343,13682823-13682987	AT2G32235.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 27 Blast hits to 27 proteins in 11 species: Archae - 0; Bacteria - 4; Metazoa - 10; Fungi - 9; Plants - 3; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G32235.1p  transcript_id AT2G32235.1  protein_id AT2G32235.1p  transcript_id AT2G32235.1  
At2g32240	chr2:013689241	0.0	C/13689241-13689330,13685934-13689053,13685602-13685844,13685351-13685506,13685038-13685190,13684614-13684853	AT2G32240.1  CDS  gene_syn F22D22.1, F22D22_1  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05320.3); Has 221693 Blast hits to 95553 proteins in 2574 species: Archae - 2848; Bacteria - 44259; Metazoa - 97474; Fungi - 15490; Plants - 8386; Viruses - 1229; Other Eukaryotes - 52007 (source: NCBI BLink).  protein_id AT2G32240.1p  transcript_id AT2G32240.1  protein_id AT2G32240.1p  transcript_id AT2G32240.1  
At2g32250	chr2:013693518	0.0	W/13693518-13695479,13695568-13695624,13695771-13695902,13695998-13696060,13696223-13696288,13696412-13696486,13696715-13696783	AT2G32250.1  CDS  gene_syn FAR1-related sequence 2, FRS2, T32F6.23, T32F6_23  gene FRS2  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process response to red or far red light|GO:0009639||ISS  product FRS2 (FAR1-related sequence 2); zinc ion binding  note FAR1-related sequence 2 (FRS2); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FHY3 (FAR-RED ELONGATED HYPOCOTYLS 3); transcription activator/ transcription factor (TAIR:AT3G22170.2); Has 753 Blast hits to 696 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 63; Plants - 689; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G32250.1p  transcript_id AT2G32250.1  protein_id AT2G32250.1p  transcript_id AT2G32250.1  
At2g32250	chr2:013693518	0.0	W/13693518-13695479,13695568-13695624,13695771-13695902,13695998-13696060,13696223-13696288,13696412-13696486,13696715-13696783	AT2G32250.3  CDS  gene_syn FAR1-related sequence 2, FRS2, T32F6.23, T32F6_23  gene FRS2  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process response to red or far red light|GO:0009639||ISS  product FRS2 (FAR1-related sequence 2); zinc ion binding  note FAR1-related sequence 2 (FRS2); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FHY3 (FAR-RED ELONGATED HYPOCOTYLS 3); transcription activator/ transcription factor (TAIR:AT3G22170.2); Has 753 Blast hits to 696 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 63; Plants - 689; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G32250.3p  transcript_id AT2G32250.3  protein_id AT2G32250.3p  transcript_id AT2G32250.3  
At2g32250	chr2:013693518	0.0	W/13693518-13695479,13695568-13695624,13695771-13695902,13695998-13696060,13696223-13696288,13696418-13696486,13696715-13696783	AT2G32250.2  CDS  gene_syn FAR1-related sequence 2, FRS2, T32F6.23, T32F6_23  gene FRS2  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process response to red or far red light|GO:0009639||ISS  product FRS2 (FAR1-related sequence 2); zinc ion binding  note FAR1-related sequence 2 (FRS2); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FHY3 (FAR-RED ELONGATED HYPOCOTYLS 3); transcription activator/ transcription factor (TAIR:AT3G22170.2); Has 753 Blast hits to 696 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 63; Plants - 689; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G32250.2p  transcript_id AT2G32250.2  protein_id AT2G32250.2p  transcript_id AT2G32250.2  
At2g32250	chr2:013693518	0.0	W/13693518-13695479,13695568-13695624,13695771-13695902,13695998-13696060,13696223-13696288,13696418-13696486,13696715-13696783	AT2G32250.4  CDS  gene_syn FAR1-related sequence 2, FRS2, T32F6.23, T32F6_23  gene FRS2  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process response to red or far red light|GO:0009639||ISS  product FRS2 (FAR1-related sequence 2); zinc ion binding  note FAR1-related sequence 2 (FRS2); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FHY3 (FAR-RED ELONGATED HYPOCOTYLS 3); transcription activator/ transcription factor (TAIR:AT3G22170.2); Has 753 Blast hits to 696 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 63; Plants - 689; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G32250.4p  transcript_id AT2G32250.4  protein_id AT2G32250.4p  transcript_id AT2G32250.4  
At2g32260	chr2:013697645	0.0	W/13697645-13697823,13698254-13698370,13698470-13698565,13698733-13698775,13698850-13699005,13699099-13699179,13699806-13699904,13700014-13700241	AT2G32260.1  CDS  gene_syn ATCCT1, CCT1, PHOSPHORYLCHOLINE CYTIDYLYLTRANSFERASE, T32F6.22, T32F6_22  gene CCT1  go_process biosynthetic process|GO:0009058||IEA  go_function catalytic activity|GO:0003824||IEA  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_process biosynthetic process|GO:0009058||ISS  go_function choline-phosphate cytidylyltransferase activity|GO:0004105||ISS  product cholinephosphate cytidylyltransferase, putative / phosphorylcholine transferase, putative / CTP:phosphocholine cytidylyltransferase, putative  note PHOSPHORYLCHOLINE CYTIDYLYLTRANSFERASE (CCT1); FUNCTIONS IN: choline-phosphate cytidylyltransferase activity, catalytic activity, nucleotidyltransferase activity; INVOLVED IN: biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cytidyltransferase-related (InterPro:IPR004821), Cytidylyltransferase (InterPro:IPR004820); BEST Arabidopsis thaliana protein match is: catalytic/ choline-phosphate cytidylyltransferase/ nucleotidyltransferase (TAIR:AT4G15130.1); Has 1640 Blast hits to 1372 proteins in 321 species: Archae - 15; Bacteria - 337; Metazoa - 476; Fungi - 215; Plants - 130; Viruses - 6; Other Eukaryotes - 461 (source: NCBI BLink).  protein_id AT2G32260.1p  transcript_id AT2G32260.1  protein_id AT2G32260.1p  transcript_id AT2G32260.1  
At2g32270	chr2:013704278	0.0	W/13704278-13704841,13705855-13706004,13706307-13706612	AT2G32270.1  CDS  gene_syn T32F6.21, T32F6_21, ZIP3  gene ZIP3  function A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root. also response to iron deficiency.  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process zinc ion transport|GO:0006829|11500563|TAS  go_process zinc ion transport|GO:0006829||ISS  go_function zinc ion transmembrane transporter activity|GO:0005385|11500563|TAS  go_function zinc ion transmembrane transporter activity|GO:0005385|9618566|IDA  go_function zinc ion transmembrane transporter activity|GO:0005385||ISS  product ZIP3; zinc ion transmembrane transporter  note ZIP3; FUNCTIONS IN: zinc ion transmembrane transporter activity; INVOLVED IN: zinc ion transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal and plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: ZIP5; cation transmembrane transporter/ metal ion transmembrane transporter (TAIR:AT1G05300.1); Has 1503 Blast hits to 1365 proteins in 239 species: Archae - 0; Bacteria - 158; Metazoa - 397; Fungi - 426; Plants - 330; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).  protein_id AT2G32270.1p  transcript_id AT2G32270.1  protein_id AT2G32270.1p  transcript_id AT2G32270.1  
At2g32273	chr2:013708748	0.0	C/13708748-13708864	AT2G32273.1  miRNA  gene_syn MIR417, microRNA417  gene MIR417  function Encodes a microRNA. Mature sequence:GAAGGTAGTGAATTTGTTCGA. Functions as a negative regulator of seed germination under salt stress conditions.  go_process response to cold|GO:0009409|17845858|IEP  go_process response to water deprivation|GO:0009414|17845858|IEP  go_process response to salt stress|GO:0009651|17845858|IEP  go_process response to abscisic acid stimulus|GO:0009737|17845858|IEP  go_process negative regulation of seed germination|GO:0010187|17845858|IMP  product MIR417 (microRNA417); miRNA  transcript_id AT2G32273.1  
At2g32275	chr2:013709689	0.0	W/13709689-13709967	AT2G32275.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Expressed protein  note Expressed protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G32275.1p  transcript_id AT2G32275.1  protein_id AT2G32275.1p  transcript_id AT2G32275.1  
At2g32280	chr2:013713210	0.0	W/13713210-13713308,13713506-13713711,13713791-13713977	AT2G32280.1  CDS  gene_syn T32F6.20, T32F6_20  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21310.1); Has 99 Blast hits to 99 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G32280.1p  transcript_id AT2G32280.1  protein_id AT2G32280.1p  transcript_id AT2G32280.1  
At2g32290	chr2:013716727	0.0	C/13716727-13716906,13716168-13716641,13715922-13716086,13715558-13715824,13715255-13715464,13714940-13715173,13714643-13714846	AT2G32290.1  CDS  gene_syn BAM6, BETA-AMYLASE 5, BETA-AMYLASE 6, BMY5, T32F6.19, T32F6_19  gene BAM6  go_component chloroplast|GO:0009507|18431481|IDA  go_process polysaccharide catabolic process|GO:0000272||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process cellulose biosynthetic process|GO:0030244||IEA  go_function catalytic activity|GO:0003824||IEA  go_function beta-amylase activity|GO:0016161||IEA  go_function cation binding|GO:0043169||IEA  go_function beta-amylase activity|GO:0016161||ISS  product BAM6 (BETA-AMYLASE 6); beta-amylase/ catalytic/ cation binding  note BETA-AMYLASE 6 (BAM6); FUNCTIONS IN: cation binding, beta-amylase activity, catalytic activity; INVOLVED IN: cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14, conserved site (InterPro:IPR018238), Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 14B, plant (InterPro:IPR001371), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BAM5 (BETA-AMYLASE 5); beta-amylase (TAIR:AT4G15210.1); Has 516 Blast hits to 515 proteins in 118 species: Archae - 0; Bacteria - 68; Metazoa - 0; Fungi - 0; Plants - 388; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT2G32290.1p  transcript_id AT2G32290.1  protein_id AT2G32290.1p  transcript_id AT2G32290.1  
At2g32291	chr2:013717189	0.0	C/13717189-13717655	AT2G32291.1  pseudogenic_transcript  pseudo  function Pseudogene of AT2G31470; F-box family protein  
At2g32295	chr2:013719548	0.0	W/13719548-13719608,13719711-13719793,13719914-13719952,13720062-13720154,13720234-13720350,13720416-13720511,13720599-13720712,13720793-13720846,13720920-13720967,13721044-13721194,13721279-13721444,13721525-13721594,13721681-13721959	AT2G32295.1  CDS  go_component integral to membrane|GO:0016021||IEA  go_component integral to membrane|GO:0016021||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: EXS, C-terminal (InterPro:IPR004342); BEST Arabidopsis thaliana protein match is: EXS family protein / ERD1/XPR1/SYG1 family protein (TAIR:AT5G35730.1); Has 582 Blast hits to 577 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 223; Fungi - 177; Plants - 106; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT2G32295.1p  transcript_id AT2G32295.1  protein_id AT2G32295.1p  transcript_id AT2G32295.1  
At2g32300	chr2:013722510	0.0	W/13722510-13722675,13722763-13722898,13722981-13723464	AT2G32300.1  CDS  gene_syn UCC1, UCLACYANIN 1  gene UCC1  function Encodes a uclacyanin, a protein precursor that is closely related to precursors of stellacyanins and a blue copper protein from pea pods.  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function copper ion binding|GO:0005507||ISS  product UCC1 (UCLACYANIN 1); copper ion binding / electron carrier  note UCLACYANIN 1 (UCC1); FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972), Blue (type 1) copper domain (InterPro:IPR000923); BEST Arabidopsis thaliana protein match is: plastocyanin-like domain-containing protein / mavicyanin, putative (TAIR:AT2G26720.1); Has 6738 Blast hits to 3355 proteins in 379 species: Archae - 20; Bacteria - 605; Metazoa - 1341; Fungi - 572; Plants - 1228; Viruses - 172; Other Eukaryotes - 2800 (source: NCBI BLink).  protein_id AT2G32300.1p  transcript_id AT2G32300.1  protein_id AT2G32300.1p  transcript_id AT2G32300.1  
At2g32310	chr2:013724710	0.0	W/13724710-13724784,13724856-13724939,13725023-13725181,13725275-13725451,13725551-13725751,13725847-13726007,13726087-13726207	AT2G32310.1  CDS  gene_syn T32F6.17, T32F6_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT1G05290.1); Has 396 Blast hits to 396 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 5; Plants - 366; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT2G32310.1p  transcript_id AT2G32310.1  protein_id AT2G32310.1p  transcript_id AT2G32310.1  
At2g32310	chr2:013724710	0.0	W/13724710-13724784,13724856-13724939,13725023-13725181,13725275-13725451,13725551-13725751,13725884-13725940	AT2G32310.2  CDS  gene_syn T32F6.17, T32F6_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G32310.2p  transcript_id AT2G32310.2  protein_id AT2G32310.2p  transcript_id AT2G32310.2  
At2g32315	chr2:013726299	0.0	C/13726299-13726700	AT2G32315.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G32310  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G32315.1  
At2g32320	chr2:013727938	0.0	W/13727938-13728041,13728212-13728343,13728432-13728476,13728578-13728747,13728886-13728971,13729099-13729206,13729286-13729306,13729567-13729823,13730181-13730312,13730386-13730430,13730550-13730719,13730836-13730921,13731001-13731108,13731294-13731428	AT2G32320.3  CDS  gene_syn T32F6.16, T32F6_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: tRNAHis guanylyltransferase (InterPro:IPR007537); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31580.1).  protein_id AT2G32320.3p  transcript_id AT2G32320.3  protein_id AT2G32320.3p  transcript_id AT2G32320.3  
At2g32320	chr2:013727938	0.0	W/13727938-13728041,13728212-13728343,13728432-13728476,13728578-13728747,13728886-13728971,13729099-13729206,13729567-13729823,13730181-13730312,13730386-13730430,13730550-13730719,13730836-13730921,13731001-13731108,13731294-13731428	AT2G32320.1  CDS  gene_syn T32F6.16, T32F6_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: tRNAHis guanylyltransferase (InterPro:IPR007537); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31580.1); Has 627 Blast hits to 325 proteins in 155 species: Archae - 63; Bacteria - 43; Metazoa - 214; Fungi - 178; Plants - 41; Viruses - 2; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT2G32320.1p  transcript_id AT2G32320.1  protein_id AT2G32320.1p  transcript_id AT2G32320.1  
At2g32320	chr2:013727938	0.0	W/13727938-13728041,13728212-13728343,13728432-13728476,13728578-13728747,13728886-13728971,13729099-13729242,13729567-13729823,13730181-13730312,13730386-13730430,13730550-13730719,13730836-13730921,13731001-13731108,13731294-13731428	AT2G32320.2  CDS  gene_syn T32F6.16, T32F6_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: tRNAHis guanylyltransferase (InterPro:IPR007537); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31580.1).  protein_id AT2G32320.2p  transcript_id AT2G32320.2  protein_id AT2G32320.2p  transcript_id AT2G32320.2  
At2g32340	chr2:013732247	0.0	W/13732247-13732567,13732800-13732847,13732938-13733009,13733146-13733232,13733316-13733420,13733536-13733649,13733739-13733839,13734037-13734148,13734239-13734361	AT2G32340.1  CDS  gene_syn T32F6.14, T32F6_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pheromone shutdown-related, TraB (InterPro:IPR002816); BEST Arabidopsis thaliana protein match is: TraB family protein (TAIR:AT1G05270.1); Has 393 Blast hits to 393 proteins in 158 species: Archae - 68; Bacteria - 138; Metazoa - 89; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT2G32340.1p  transcript_id AT2G32340.1  protein_id AT2G32340.1p  transcript_id AT2G32340.1  
At2g32350	chr2:013734979	0.0	W/13734979-13735263,13735345-13735788	AT2G32350.1  CDS  gene_syn T32F6.13, T32F6_13  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: ubiquitin family protein (TAIR:AT4G05230.1); Has 132 Blast hits to 112 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 34; Fungi - 1; Plants - 50; Viruses - 12; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT2G32350.1p  transcript_id AT2G32350.1  protein_id AT2G32350.1p  transcript_id AT2G32350.1  
At2g32360	chr2:013737019	0.0	C/13737019-13737546	AT2G32360.1  CDS  gene_syn T32F6.12, T32F6_12  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product ubiquitin family protein  note ubiquitin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); Has 20280 Blast hits to 7985 proteins in 437 species: Archae - 25; Bacteria - 503; Metazoa - 9977; Fungi - 1608; Plants - 624; Viruses - 536; Other Eukaryotes - 7007 (source: NCBI BLink).  protein_id AT2G32360.1p  transcript_id AT2G32360.1  protein_id AT2G32360.1p  transcript_id AT2G32360.1  
At2g32370	chr2:013742408	0.0	W/13742408-13742661,13742777-13742894,13743343-13743531,13743672-13744094,13744197-13744298,13744397-13744597,13744697-13744880,13744963-13745225,13745313-13745402,13745487-13745840	AT2G32370.1  CDS  gene_syn HDG3, HOMEODOMAIN GLABROUS 3, T32F6.11, T32F6_11  gene HDG3  function Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Together with ATML1 and PDF2, it is involved in cotyledon development.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process cotyledon development|GO:0048825|16778018|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product HDG3 (HOMEODOMAIN GLABROUS 3); DNA binding / transcription factor  note HOMEODOMAIN GLABROUS 3 (HDG3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: cotyledon development, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: fruit; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: HDG2 (HOMEODOMAIN GLABROUS 2); DNA binding / transcription factor (TAIR:AT1G05230.3); Has 10541 Blast hits to 8496 proteins in 405 species: Archae - 0; Bacteria - 109; Metazoa - 4591; Fungi - 300; Plants - 1379; Viruses - 3; Other Eukaryotes - 4159 (source: NCBI BLink).  protein_id AT2G32370.1p  transcript_id AT2G32370.1  protein_id AT2G32370.1p  transcript_id AT2G32370.1  
At2g32380	chr2:013747407	0.0	C/13747407-13747730,13746792-13746974	AT2G32380.1  CDS  gene_syn T32F6.10, T32F6_10  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane protein 97, predicted (InterPro:IPR016964); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05210.1); Has 102 Blast hits to 102 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 50; Fungi - 9; Plants - 41; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G32380.1p  transcript_id AT2G32380.1  protein_id AT2G32380.1p  transcript_id AT2G32380.1  
At2g32390	chr2:013751611	0.0	C/13751611-13751617,13750052-13751403,13749692-13749969,13749551-13749582,13749021-13749430,13748468-13748944	AT2G32390.2  CDS  gene_syn ATGLR3.5, GLR3.5, GLR6, GLUTAMATE RECEPTOR 3.5, T32F6.9, T32F6_9  gene ATGLR3.5  function Encodes a ionotropic glutamate receptor ortholog, a member of a putative ligand-gated ion channel subunit family  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process cellular calcium ion homeostasis|GO:0006874|11379626|NAS  go_process response to light stimulus|GO:0009416|11379626|NAS  go_function intracellular ligand-gated ion channel activity|GO:0005217||ISS  product ATGLR3.5 (GLUTAMATE RECEPTOR 3.5); intracellular ligand-gated ion channel  note GLUTAMATE RECEPTOR 3.5 (ATGLR3.5); FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ionotropic glutamate receptor (InterPro:IPR001320), Glutamate receptor-related (InterPro:IPR015683), Extracellular ligand-binding receptor (InterPro:IPR001828), GPCR, family 3 (InterPro:IPR000337), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: ATGLR3.4; intracellular ligand-gated ion channel (TAIR:AT1G05200.2); Has 4324 Blast hits to 4216 proteins in 246 species: Archae - 7; Bacteria - 243; Metazoa - 3561; Fungi - 0; Plants - 314; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink).  protein_id AT2G32390.2p  transcript_id AT2G32390.2  protein_id AT2G32390.2p  transcript_id AT2G32390.2  
At2g32390	chr2:013751611	0.0	C/13751611-13751757,13750052-13751395,13749692-13749969,13749551-13749582,13749021-13749430,13748468-13748944	AT2G32390.1  CDS  gene_syn ATGLR3.5, GLR3.5, GLR6, GLUTAMATE RECEPTOR 3.5, T32F6.9, T32F6_9  gene ATGLR3.5  function Encodes a ionotropic glutamate receptor ortholog, a member of a putative ligand-gated ion channel subunit family  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process cellular calcium ion homeostasis|GO:0006874|11379626|NAS  go_process response to light stimulus|GO:0009416|11379626|NAS  go_function intracellular ligand-gated ion channel activity|GO:0005217||ISS  product ATGLR3.5 (GLUTAMATE RECEPTOR 3.5); intracellular ligand-gated ion channel  note GLUTAMATE RECEPTOR 3.5 (ATGLR3.5); FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ionotropic glutamate receptor (InterPro:IPR001320), Glutamate receptor-related (InterPro:IPR015683), Extracellular ligand-binding receptor (InterPro:IPR001828), GPCR, family 3 (InterPro:IPR000337), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: ATGLR3.4; intracellular ligand-gated ion channel (TAIR:AT1G05200.2); Has 4326 Blast hits to 4216 proteins in 245 species: Archae - 7; Bacteria - 241; Metazoa - 3565; Fungi - 0; Plants - 314; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink).  protein_id AT2G32390.1p  transcript_id AT2G32390.1  protein_id AT2G32390.1p  transcript_id AT2G32390.1  
At2g32400	chr2:013755972	0.0	C/13755972-13756233,13754301-13755622,13753904-13754178,13753787-13753818,13753206-13753615,13752665-13753129	AT2G32400.1  CDS  gene_syn ATGLR3.7, GLR3.7, GLR5, GLUTAMATE RECEPTOR 3.7, GLUTAMATE RECEPTOR 5, T32F6.8, T32F6_8  gene GLR5  function Glr5  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process cellular calcium ion homeostasis|GO:0006874|11379626|NAS  go_process response to light stimulus|GO:0009416|11379626|NAS  go_function intracellular ligand-gated ion channel activity|GO:0005217||ISS  product GLR5 (GLUTAMATE RECEPTOR 5); intracellular ligand-gated ion channel  note GLUTAMATE RECEPTOR 5 (GLR5); FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), GPCR, family 3, gamma-aminobutyric acid receptor, type B (InterPro:IPR002455), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: ATGLR3.4; intracellular ligand-gated ion channel (TAIR:AT1G05200.2); Has 5424 Blast hits to 5305 proteins in 436 species: Archae - 45; Bacteria - 656; Metazoa - 3913; Fungi - 0; Plants - 308; Viruses - 0; Other Eukaryotes - 502 (source: NCBI BLink).  protein_id AT2G32400.1p  transcript_id AT2G32400.1  protein_id AT2G32400.1p  transcript_id AT2G32400.1  
At2g32410	chr2:013757702	0.0	W/13757702-13757739,13757848-13758020,13758114-13758277,13758371-13758481,13758568-13758647,13758778-13758928,13759023-13759116,13759366-13759454,13759658-13759731,13759829-13759991,13760062-13760147,13760254-13760284	AT2G32410.2  CDS  gene_syn AXL, AXR1-LIKE, T32F6.7, T32F6_7  gene AXL  go_component peroxisome|GO:0005777|12154131|IDA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_process auxin mediated signaling pathway|GO:0009734||ISS  go_process post-embryonic development|GO:0009791|17655650|IMP  go_process auxin homeostasis|GO:0010252|17655650|NAS  go_process protein ubiquitination|GO:0016567|17655650|IGI  go_function catalytic activity|GO:0003824||ISS  product AXL (AXR1-LIKE); binding / catalytic  note AXR1-LIKE (AXL); FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: auxin homeostasis, post-embryonic development, auxin mediated signaling pathway, protein ubiquitination; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594), Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: AXR1 (AUXIN RESISTANT 1); small protein activating enzyme (TAIR:AT1G05180.1); Has 4393 Blast hits to 4029 proteins in 811 species: Archae - 102; Bacteria - 1477; Metazoa - 984; Fungi - 552; Plants - 236; Viruses - 0; Other Eukaryotes - 1042 (source: NCBI BLink).  protein_id AT2G32410.2p  transcript_id AT2G32410.2  protein_id AT2G32410.2p  transcript_id AT2G32410.2  
At2g32410	chr2:013757702	0.0	W/13757702-13757739,13757848-13758020,13758114-13758277,13758371-13758481,13758568-13758647,13758778-13758928,13759023-13759116,13759366-13759454,13759658-13759731,13759829-13759991,13760062-13760147,13760327-13760410,13760497-13760677,13760779-13760862	AT2G32410.1  CDS  gene_syn AXL, AXR1-LIKE, T32F6.7, T32F6_7  gene AXL  go_component peroxisome|GO:0005777|12154131|IDA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_process auxin mediated signaling pathway|GO:0009734||ISS  go_process post-embryonic development|GO:0009791|17655650|IMP  go_process auxin homeostasis|GO:0010252|17655650|NAS  go_process protein ubiquitination|GO:0016567|17655650|IGI  go_function catalytic activity|GO:0003824||ISS  product AXL (AXR1-LIKE); binding / catalytic  note AXR1-LIKE (AXL); FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: auxin homeostasis, post-embryonic development, auxin mediated signaling pathway, protein ubiquitination; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594), Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: AXR1 (AUXIN RESISTANT 1); small protein activating enzyme (TAIR:AT1G05180.1); Has 4496 Blast hits to 4040 proteins in 812 species: Archae - 102; Bacteria - 1477; Metazoa - 1020; Fungi - 585; Plants - 267; Viruses - 0; Other Eukaryotes - 1045 (source: NCBI BLink).  protein_id AT2G32410.1p  transcript_id AT2G32410.1  protein_id AT2G32410.1p  transcript_id AT2G32410.1  
At2g32415	chr2:013765181	0.0	C/13765181-13765421,13764848-13765089,13764671-13764769,13764434-13764517,13764134-13764220,13763908-13764028,13763597-13763781,13763479-13763517,13762851-13763368,13762247-13762751,13761995-13762154,13761559-13761889,13761307-13761370	AT2G32415.1  CDS  gene_syn AT2G32420  go_component intracellular|GO:0005622||IEA  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function 3 -5  exonuclease activity|GO:0008408||IEA  product 3 -5  exonuclease/ nucleic acid binding  note 3 -5  exonuclease/ nucleic acid binding; FUNCTIONS IN: 3 -5  exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; EXPRESSED IN: shoot apex, cultured cell; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Helicase and RNase D C-terminal, HRDC (InterPro:IPR002121), 3 -5  exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: 3 -5  exonuclease domain-containing protein / helicase and RNase D C-terminal domain-containing protein / HRDC domain-containing protein (TAIR:AT5G35910.1); Has 2895 Blast hits to 2797 proteins in 774 species: Archae - 0; Bacteria - 1374; Metazoa - 367; Fungi - 93; Plants - 108; Viruses - 0; Other Eukaryotes - 953 (source: NCBI BLink).  protein_id AT2G32415.1p  transcript_id AT2G32415.1  protein_id AT2G32415.1p  transcript_id AT2G32415.1  
At2g32430	chr2:013771626	0.0	W/13771626-13771738,13772081-13772180,13772268-13772341,13772416-13772627,13772721-13772784,13772901-13772973,13773061-13773181,13773281-13773368,13773452-13773577,13773653-13773762,13773954-13774102	AT2G32430.1  CDS  gene_syn T32F6.5, T32F6_5  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process protein amino acid glycosylation|GO:0006486||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product galactosyltransferase family protein  note galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: galactosyltransferase family protein (TAIR:AT1G05170.2); Has 1014 Blast hits to 1008 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 686; Fungi - 0; Plants - 313; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT2G32430.1p  transcript_id AT2G32430.1  protein_id AT2G32430.1p  transcript_id AT2G32430.1  
At2g32440	chr2:013775668	0.0	W/13775668-13775903,13776018-13776495,13776575-13776838,13776907-13776993,13777089-13777167,13777258-13777364,13777472-13777593,13777687-13777783	AT2G32440.1  CDS  gene_syn ATKAO2, CYP88A4, ENT-KAURENOIC ACID HYDROXYLASE 2, KAO2, T32F6.4, T32F6_4  gene KAO2  function ent-kaurenoic acid hydroxylase (KAO2)  go_component endoplasmic reticulum|GO:0005783|11722763|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process gibberellin biosynthetic process|GO:0009686|11172076|ISS  go_process gibberellin biosynthetic process|GO:0009686|15923331|TAS  go_function oxygen binding|GO:0019825|11172076|ISS  go_function ent-kaurenoate oxidase activity|GO:0051777|11172076|IDA  product KAO2 (ENT-KAURENOIC ACID HYDROXYLASE 2); ent-kaurenoate oxidase/ oxygen binding  note ENT-KAURENOIC ACID HYDROXYLASE 2 (KAO2); FUNCTIONS IN: ent-kaurenoate oxidase activity, oxygen binding; INVOLVED IN: gibberellin biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450, B-class (InterPro:IPR002397), Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP88A3 (CYTOCHROME P450 88 A3); ent-kaurenoate oxidase/ oxygen binding (TAIR:AT1G05160.1); Has 24744 Blast hits to 24695 proteins in 1340 species: Archae - 51; Bacteria - 4498; Metazoa - 9871; Fungi - 3856; Plants - 4758; Viruses - 6; Other Eukaryotes - 1704 (source: NCBI BLink).  protein_id AT2G32440.1p  transcript_id AT2G32440.1  protein_id AT2G32440.1p  transcript_id AT2G32440.1  
At2g32450	chr2:013778614	0.0	W/13778614-13781022	AT2G32450.1  CDS  gene_syn T32F6.3, T32F6_3  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: binding, zinc ion binding, calcium ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), EF-HAND 2 (InterPro:IPR018249), Zinc finger, ZZ-type (InterPro:IPR000433), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT1G05150.1); Has 27398 Blast hits to 12741 proteins in 970 species: Archae - 1202; Bacteria - 12147; Metazoa - 3677; Fungi - 452; Plants - 511; Viruses - 0; Other Eukaryotes - 9409 (source: NCBI BLink).  protein_id AT2G32450.1p  transcript_id AT2G32450.1  protein_id AT2G32450.1p  transcript_id AT2G32450.1  
At2g32460	chr2:013784061	0.0	C/13784061-13784363,13782922-13783780,13782419-13782729	AT2G32460.1  CDS  gene_syn ABC TRANSPORTER OF THE MITOCHONDRION, ARABIDOPSIS THALIANA MYB 1, ATM1, ATMYB101, MYB101, T32F6.1  gene MYB101  function Member of the R2R3 factor gene family.  go_component nucleus|GO:0005634|11743113|TAS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process gibberellic acid mediated signaling|GO:0009740|11743113|TAS  go_process positive regulation of abscisic acid mediated signaling|GO:0009789|17217461|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11743113|TAS  product MYB101; DNA binding / transcription factor  note MYB101; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: positive regulation of abscisic acid mediated signaling, regulation of transcription, DNA-dependent, gibberellic acid mediated signaling; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB33 (MYB DOMAIN PROTEIN 33); DNA binding / transcription factor (TAIR:AT5G06100.3); Has 6604 Blast hits to 6049 proteins in 359 species: Archae - 0; Bacteria - 10; Metazoa - 771; Fungi - 293; Plants - 3820; Viruses - 7; Other Eukaryotes - 1703 (source: NCBI BLink).  protein_id AT2G32460.1p  transcript_id AT2G32460.1  protein_id AT2G32460.1p  transcript_id AT2G32460.1  
At2g32460	chr2:013784354	0.0	C/13784354-13784359,13784061-13784321,13782922-13783780,13782419-13782729	AT2G32460.2  CDS  gene_syn ABC TRANSPORTER OF THE MITOCHONDRION, ARABIDOPSIS THALIANA MYB 1, ATM1, ATMYB101, MYB101, T32F6.1  gene MYB101  function Member of the R2R3 factor gene family.  go_component nucleus|GO:0005634|11743113|TAS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process gibberellic acid mediated signaling|GO:0009740|11743113|TAS  go_process positive regulation of abscisic acid mediated signaling|GO:0009789|17217461|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11743113|TAS  product MYB101; DNA binding / transcription factor  note MYB101; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: positive regulation of abscisic acid mediated signaling, regulation of transcription, DNA-dependent, gibberellic acid mediated signaling; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB33 (MYB DOMAIN PROTEIN 33); DNA binding / transcription factor (TAIR:AT5G06100.3); Has 6354 Blast hits to 6043 proteins in 359 species: Archae - 0; Bacteria - 10; Metazoa - 624; Fungi - 295; Plants - 3778; Viruses - 5; Other Eukaryotes - 1642 (source: NCBI BLink).  protein_id AT2G32460.2p  transcript_id AT2G32460.2  protein_id AT2G32460.2p  transcript_id AT2G32460.2  
At2g32470	chr2:013787593	0.0	W/13787593-13788459	AT2G32470.1  CDS  gene_syn T26B15.3, T26B15_3  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22791.2); Has 347 Blast hits to 341 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 347; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G32470.1p  transcript_id AT2G32470.1  protein_id AT2G32470.1p  transcript_id AT2G32470.1  
At2g32480	chr2:013788679	0.0	C/13788679-13790022	AT2G32480.1  CDS  gene_syn T26B15.4, T26B15_4  go_component chloroplast|GO:0009507|18431481|IDA  go_process proteolysis|GO:0006508||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_function protein binding|GO:0005515||IEA  go_component plastid|GO:0009536|10891285|ISS  go_process proteolysis|GO:0006508||ISS  go_function metalloendopeptidase activity|GO:0004222||ISS  product membrane-associated zinc metalloprotease, putative  note membrane-associated zinc metalloprotease, putative; FUNCTIONS IN: protein binding, metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M50 (InterPro:IPR008915), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase M50, putative membrane-associated zinc metallopeptidase (InterPro:IPR004387); BEST Arabidopsis thaliana protein match is: membrane-associated zinc metalloprotease, putative (TAIR:AT1G05140.1); Has 6832 Blast hits to 5448 proteins in 1198 species: Archae - 29; Bacteria - 3558; Metazoa - 3; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 3202 (source: NCBI BLink).  protein_id AT2G32480.1p  transcript_id AT2G32480.1  protein_id AT2G32480.1p  transcript_id AT2G32480.1  
At2g32480	chr2:013789108	0.0	C/13789108-13790022,13788679-13788996	AT2G32480.2  CDS  gene_syn T26B15.4, T26B15_4  go_component chloroplast|GO:0009507|18431481|IDA  go_process proteolysis|GO:0006508||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_function protein binding|GO:0005515||IEA  go_component plastid|GO:0009536|10891285|ISS  go_process proteolysis|GO:0006508||ISS  go_function metalloendopeptidase activity|GO:0004222||ISS  product membrane-associated zinc metalloprotease, putative  note membrane-associated zinc metalloprotease, putative; FUNCTIONS IN: protein binding, metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M50 (InterPro:IPR008915), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase M50, putative membrane-associated zinc metallopeptidase (InterPro:IPR004387); BEST Arabidopsis thaliana protein match is: membrane-associated zinc metalloprotease, putative (TAIR:AT1G05140.1); Has 6865 Blast hits to 5427 proteins in 1206 species: Archae - 46; Bacteria - 3617; Metazoa - 3; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 3159 (source: NCBI BLink).  protein_id AT2G32480.2p  transcript_id AT2G32480.2  protein_id AT2G32480.2p  transcript_id AT2G32480.2  
At2g32487	chr2:013791921	0.0	W/13791921-13791979,13792155-13792240,13792839-13792888	AT2G32487.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G32487.1p  transcript_id AT2G32487.1  protein_id AT2G32487.1p  transcript_id AT2G32487.1  
At2g32490	chr2:013794633	0.0	W/13794633-13795213	AT2G32490.1  pseudogenic_transcript  pseudo  gene_syn T26B15.5, T26B15_5  function pseudogene of 3 -5  exonuclease domain-containing protein  
At2g32500	chr2:013797075	0.0	C/13797075-13797120,13796784-13796898,13796492-13796619,13796256-13796395,13796079-13796147,13795826-13795964,13795685-13795747,13795556-13795599,13795371-13795457	AT2G32500.1  CDS  gene_syn T26B15.6, T26B15_6  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Stress responsive alpha-beta barrel (InterPro:IPR013097), Dimeric alpha-beta barrel (InterPro:IPR011008); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31670.1); Has 36 Blast hits to 33 proteins in 10 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G32500.1p  transcript_id AT2G32500.1  protein_id AT2G32500.1p  transcript_id AT2G32500.1  
At2g32510	chr2:013798821	0.0	C/13798821-13799939	AT2G32510.1  CDS  gene_syn MAPKKK17, T26B15.7, T26B15_7  gene MAPKKK17  function member of MEKK subfamily  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product MAPKKK17; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note MAPKKK17; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: MAPKKK18; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT1G05100.1); Has 92615 Blast hits to 91332 proteins in 3376 species: Archae - 68; Bacteria - 8262; Metazoa - 40509; Fungi - 8258; Plants - 18030; Viruses - 609; Other Eukaryotes - 16879 (source: NCBI BLink).  protein_id AT2G32510.1p  transcript_id AT2G32510.1  protein_id AT2G32510.1p  transcript_id AT2G32510.1  
At2g32520	chr2:013807395	0.0	C/13807395-13807442,13806597-13806739,13806386-13806515,13806114-13806305,13805823-13806029	AT2G32520.1  CDS  gene_syn T26B15.8, T26B15_8  go_component chloroplast|GO:0009507|18431481|IDA  go_function hydrolase activity|GO:0016787||IEA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product dienelactone hydrolase family protein  note dienelactone hydrolase family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase (InterPro:IPR002155), Dienelactone hydrolase (InterPro:IPR002925); BEST Arabidopsis thaliana protein match is: dienelactone hydrolase family protein (TAIR:AT1G35420.1); Has 2362 Blast hits to 2362 proteins in 596 species: Archae - 20; Bacteria - 1757; Metazoa - 54; Fungi - 12; Plants - 53; Viruses - 0; Other Eukaryotes - 466 (source: NCBI BLink).  protein_id AT2G32520.1p  transcript_id AT2G32520.1  protein_id AT2G32520.1p  transcript_id AT2G32520.1  
At2g32530	chr2:013809283	0.0	W/13809283-13809545,13809773-13810091,13810473-13810598,13810695-13810817,13811426-13811626,13811720-13811855,13812089-13812270,13812370-13812720,13812921-13813487	AT2G32530.1  CDS  gene_syn ATCSLB03, ATCSLB3, CELLULOSE SYNTHASE LIKE B3, CSLB03, T26B15.9, T26B15_9  gene ATCSLB03  function encodes a gene similar to cellulose synthase  go_component membrane|GO:0016020||IEA  go_process cellulose biosynthetic process|GO:0030244||IEA  go_process polysaccharide biosynthetic process|GO:0000271||ISS  go_function transferase activity|GO:0016740||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  product ATCSLB03; cellulose synthase/ transferase/ transferase, transferring glycosyl groups  note ATCSLB03; FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: cellulose biosynthetic process, polysaccharide biosynthetic process; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: ATCSLB04; cellulose synthase/ transferase/ transferase, transferring glycosyl groups (TAIR:AT2G32540.1); Has 1596 Blast hits to 1539 proteins in 313 species: Archae - 2; Bacteria - 466; Metazoa - 0; Fungi - 2; Plants - 1106; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT2G32530.1p  transcript_id AT2G32530.1  protein_id AT2G32530.1p  transcript_id AT2G32530.1  
At2g32540	chr2:013814686	0.0	W/13814686-13814948,13815088-13815406,13815628-13815753,13815857-13815979,13816313-13816513,13816653-13816788,13816939-13817120,13817197-13817547,13817723-13818289	AT2G32540.1  CDS  gene_syn ATCSLB04, ATCSLB4, CELLULOSE SYNTHASE LIKE B4, CSLB04, T26B15.10, T26B15_10  gene ATCSLB04  function encodes a gene similar to cellulose synthase  go_component membrane|GO:0016020||IEA  go_process cellulose biosynthetic process|GO:0030244||IEA  go_process polysaccharide biosynthetic process|GO:0000271||ISS  go_function transferase activity|GO:0016740||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  product ATCSLB04; cellulose synthase/ transferase/ transferase, transferring glycosyl groups  note ATCSLB04; FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: cellulose biosynthetic process, polysaccharide biosynthetic process; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: ATCSLB03; cellulose synthase/ transferase/ transferase, transferring glycosyl groups (TAIR:AT2G32530.1); Has 1589 Blast hits to 1534 proteins in 313 species: Archae - 2; Bacteria - 462; Metazoa - 0; Fungi - 4; Plants - 1106; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT2G32540.1p  transcript_id AT2G32540.1  protein_id AT2G32540.1p  transcript_id AT2G32540.1  
At2g32550	chr2:013819406	0.0	W/13819406-13819624,13821132-13821203,13821337-13821441,13821556-13821598,13821686-13821795,13821891-13821986,13822080-13822276,13822376-13822445,13822544-13822600	AT2G32550.1  CDS  gene_syn T26B15.11, T26B15_11  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  product rcd1-like cell differentiation family protein  note rcd1-like cell differentiation family protein; INVOLVED IN: multicellular organismal development; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cell differentiation, Rcd1-like (InterPro:IPR007216); BEST Arabidopsis thaliana protein match is: rcd1-like cell differentiation protein, putative (TAIR:AT5G12980.1); Has 345 Blast hits to 344 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 136; Fungi - 85; Plants - 61; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT2G32550.1p  transcript_id AT2G32550.1  protein_id AT2G32550.1p  transcript_id AT2G32550.1  
At2g32560	chr2:013824820	0.0	W/13824820-13825416,13825504-13825583,13825667-13825845,13825926-13826000,13826577-13826761	AT2G32560.1  CDS  gene_syn AT2G32570, T26B15.12, T26B15_12  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G26850.1); Has 52 Blast hits to 52 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G32560.1p  transcript_id AT2G32560.1  protein_id AT2G32560.1p  transcript_id AT2G32560.1  
At2g32580	chr2:013827849	0.0	W/13827849-13828029,13828653-13828676,13828789-13829135	AT2G32580.1  CDS  gene_syn T26B15.14, T26B15_14  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1068 (InterPro:IPR010471); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05070.1); Has 54 Blast hits to 54 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G32580.1p  transcript_id AT2G32580.1  protein_id AT2G32580.1p  transcript_id AT2G32580.1  
At2g32590	chr2:013832943	0.0	C/13832943-13833209,13832637-13832738,13832382-13832499,13831979-13832043,13831846-13831906,13831556-13831756,13831170-13831465,13830943-13831087,13830590-13830846,13830442-13830472,13830082-13830236,13829855-13829965,13829420-13829626	AT2G32590.1  CDS  gene_syn T26B15.15, T26B15_15  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process mitotic cell cycle|GO:0000278||IEA  go_process mitosis|GO:0007067||IEA  product unknown protein  note INVOLVED IN: mitosis, mitotic cell cycle; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Barren (InterPro:IPR008418); Has 340 Blast hits to 330 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 102; Plants - 21; Viruses - 1; Other Eukaryotes - 81 (source: NCBI BLink).  protein_id AT2G32590.1p  transcript_id AT2G32590.1  protein_id AT2G32590.1p  transcript_id AT2G32590.1  
At2g32600	chr2:013835374	0.0	C/13835374-13835525,13834949-13835118,13834658-13834734,13834488-13834553,13834323-13834397,13834113-13834187,13833779-13833997	AT2G32600.1  CDS  gene_syn T26B15.16, T26B15_16  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component spliceosome|GO:0005681||ISS  go_process biological_process|GO:0008150||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, intracellular, spliceosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, U1-type (InterPro:IPR003604), Zinc finger, C2H2-type matrin (InterPro:IPR000690); Has 17385 Blast hits to 7765 proteins in 482 species: Archae - 26; Bacteria - 1475; Metazoa - 7274; Fungi - 1847; Plants - 3510; Viruses - 897; Other Eukaryotes - 2356 (source: NCBI BLink).  protein_id AT2G32600.1p  transcript_id AT2G32600.1  protein_id AT2G32600.1p  transcript_id AT2G32600.1  
At2g32610	chr2:013836234	0.0	W/13836234-13836496,13836696-13837017,13837222-13837347,13837442-13837564,13837699-13837899,13837989-13838124,13838198-13838379,13838456-13838803,13838941-13839513	AT2G32610.1  CDS  gene_syn ATCSLB01, ATCSLB1, CELLULOSE SYNTHASE LIKE B1, CSLB01, T26B15.17, T26B15_17  gene ATCSLB01  function encodes a gene similar to cellulose synthase  go_component membrane|GO:0016020||IEA  go_process cellulose biosynthetic process|GO:0030244||IEA  go_process polysaccharide biosynthetic process|GO:0000271||ISS  go_function transferase activity|GO:0016740||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  product ATCSLB01; cellulose synthase/ transferase/ transferase, transferring glycosyl groups  note ATCSLB01; FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: cellulose biosynthetic process, polysaccharide biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: ATCSLB02; cellulose synthase/ transferase/ transferase, transferring glycosyl groups (TAIR:AT2G32620.1); Has 1779 Blast hits to 1622 proteins in 340 species: Archae - 2; Bacteria - 585; Metazoa - 0; Fungi - 6; Plants - 1154; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT2G32610.1p  transcript_id AT2G32610.1  protein_id AT2G32610.1p  transcript_id AT2G32610.1  
At2g32620	chr2:013840744	0.0	W/13840744-13841006,13841208-13841526,13841725-13841850,13841915-13842037,13842397-13842597,13842710-13842845,13843020-13843201,13843277-13843624,13843749-13844324	AT2G32620.1  CDS  gene_syn ATCSLB02, ATCSLB2, CELLULOSE SYNTHASE LIKE B2, CSLB02, T26B15.18, T26B15_18  gene ATCSLB02  function encodes a gene similar to cellulose synthase  go_component membrane|GO:0016020||IEA  go_process cellulose biosynthetic process|GO:0030244||IEA  go_process polysaccharide biosynthetic process|GO:0000271||ISS  go_function transferase activity|GO:0016740||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  product ATCSLB02; cellulose synthase/ transferase/ transferase, transferring glycosyl groups  note ATCSLB02; FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: cellulose biosynthetic process, polysaccharide biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: ATCSLB03; cellulose synthase/ transferase/ transferase, transferring glycosyl groups (TAIR:AT2G32530.1); Has 1664 Blast hits to 1572 proteins in 325 species: Archae - 5; Bacteria - 526; Metazoa - 0; Fungi - 6; Plants - 1112; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT2G32620.1p  transcript_id AT2G32620.1  protein_id AT2G32620.1p  transcript_id AT2G32620.1  
At2g32630	chr2:013844834	0.0	W/13844834-13846708	AT2G32630.1  CDS  gene_syn T26B15.19, T26B15_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT1G05670.2); Has 24903 Blast hits to 6117 proteins in 190 species: Archae - 4; Bacteria - 30; Metazoa - 789; Fungi - 688; Plants - 22202; Viruses - 0; Other Eukaryotes - 1190 (source: NCBI BLink).  protein_id AT2G32630.1p  transcript_id AT2G32630.1  protein_id AT2G32630.1p  transcript_id AT2G32630.1  
At2g32640	chr2:013850680	0.0	C/13850680-13850811,13850273-13850390,13850002-13850189,13849813-13849920,13849669-13849733,13849448-13849553,13849273-13849356,13848972-13849118,13848757-13848885,13848609-13848676,13848410-13848443,13848225-13848309,13848025-13848092,13847828-13847941,13847625-13847747,13847416-13847507,13847197-13847293	AT2G32640.1  CDS  gene_syn T26B15.22  go_component chloroplast|GO:0009507|18431481|IDA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 221 Blast hits to 220 proteins in 68 species: Archae - 0; Bacteria - 179; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT2G32640.1p  transcript_id AT2G32640.1  protein_id AT2G32640.1p  transcript_id AT2G32640.1  
At2g32640	chr2:013850680	0.0	C/13850680-13850811,13850273-13850390,13850002-13850189,13849813-13849920,13849669-13849733,13849448-13849553,13849273-13849356,13848972-13849118,13848757-13848885,13848609-13848676,13848495-13848507	AT2G32640.2  CDS  gene_syn T26B15.22  go_component chloroplast|GO:0009507|18431481|IDA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 180 Blast hits to 180 proteins in 59 species: Archae - 0; Bacteria - 151; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G32640.2p  transcript_id AT2G32640.2  protein_id AT2G32640.2p  transcript_id AT2G32640.2  
At2g32650	chr2:013851547	0.0	W/13851547-13851966	AT2G32650.1  CDS  gene_syn F24L7.21, F24L7_21  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Protein of unknown function DUF861, cupin-3 (InterPro:IPR008579), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: PTAC18 (PLASTID TRANSCRIPTIONALLY ACTIVE 18) (TAIR:AT2G32180.1); Has 169 Blast hits to 169 proteins in 46 species: Archae - 0; Bacteria - 71; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT2G32650.1p  transcript_id AT2G32650.1  protein_id AT2G32650.1p  transcript_id AT2G32650.1  
At2g32650	chr2:013851547	0.0	W/13851547-13851966	AT2G32650.2  CDS  gene_syn F24L7.21, F24L7_21  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Protein of unknown function DUF861, cupin-3 (InterPro:IPR008579), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: PTAC18 (PLASTID TRANSCRIPTIONALLY ACTIVE 18) (TAIR:AT2G32180.1); Has 169 Blast hits to 169 proteins in 46 species: Archae - 0; Bacteria - 71; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT2G32650.2p  transcript_id AT2G32650.2  protein_id AT2G32650.2p  transcript_id AT2G32650.2  
At2g32645	chr2:013852387	0.0	C/13852387-13852859,13851989-13852085	AT2G32645.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G27410.1); Has 56 Blast hits to 56 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G32645.1p  transcript_id AT2G32645.1  protein_id AT2G32645.1p  transcript_id AT2G32645.1  
At2g32660	chr2:013853897	0.0	C/13853897-13855666	AT2G32660.1  CDS  gene_syn AtRLP22, F24L7.20, F24L7_20, Receptor Like Protein 22  gene AtRLP22  go_component cellular_component|GO:0005575||ND  go_process defense response|GO:0006952||ISS  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  go_function kinase activity|GO:0016301||ISS  product AtRLP22 (Receptor Like Protein 22); kinase/ protein binding  note Receptor Like Protein 22 (AtRLP22); FUNCTIONS IN: protein binding, kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, hypocotyl, flower, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP27 (Receptor Like Protein 27); kinase/ protein binding (TAIR:AT2G33060.1); Has 45163 Blast hits to 15016 proteins in 701 species: Archae - 35; Bacteria - 2169; Metazoa - 10701; Fungi - 509; Plants - 28414; Viruses - 14; Other Eukaryotes - 3321 (source: NCBI BLink).  protein_id AT2G32660.1p  transcript_id AT2G32660.1  protein_id AT2G32660.1p  transcript_id AT2G32660.1  
At2g32670	chr2:013857941	0.0	W/13857941-13858325,13858532-13858673,13858763-13858883,13859015-13859077,13859200-13859346	AT2G32670.1  CDS  gene_syn ATVAMP725, F24L7.19, F24L7_19, VAMP725, VESICLE-ASSOCIATED MEMBRANE PROTEIN 725  gene ATVAMP725  function member of Synaptobrevin -like protein family  go_process transport|GO:0006810||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_component endosome|GO:0005768|15876431|TAS  go_component plasma membrane|GO:0005886|15876431|TAS  go_component membrane|GO:0016020||ISS  go_function molecular_function|GO:0003674||ND  product ATVAMP725  note ATVAMP725; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: endosome, plasma membrane, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) (TAIR:AT2G33120.1); Has 1796 Blast hits to 1795 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 830; Fungi - 289; Plants - 365; Viruses - 0; Other Eukaryotes - 312 (source: NCBI BLink).  protein_id AT2G32670.1p  transcript_id AT2G32670.1  protein_id AT2G32670.1p  transcript_id AT2G32670.1  
At2g32680	chr2:013859942	0.0	C/13859942-13862614	AT2G32680.1  CDS  gene_syn AtRLP23, F24L7.18, F24L7_18, Receptor Like Protein 23  gene AtRLP23  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  go_function kinase activity|GO:0016301||ISS  product AtRLP23 (Receptor Like Protein 23); kinase/ protein binding  note Receptor Like Protein 23 (AtRLP23); FUNCTIONS IN: protein binding, kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP24 (Receptor Like Protein 24); kinase/ protein binding (TAIR:AT2G33020.1); Has 79005 Blast hits to 22425 proteins in 849 species: Archae - 56; Bacteria - 5890; Metazoa - 27312; Fungi - 979; Plants - 38797; Viruses - 48; Other Eukaryotes - 5923 (source: NCBI BLink).  protein_id AT2G32680.1p  transcript_id AT2G32680.1  protein_id AT2G32680.1p  transcript_id AT2G32680.1  
At2g32690	chr2:013863934	0.0	C/13863934-13864539	AT2G32690.1  CDS  gene_syn ATGRP23, F24L7.17, F24L7_17, GLYCINE-RICH PROTEIN 23, GRP23  gene GRP23  function Glycine-rich protein similar in structure to GRP5. The expression of GRP23 is induced by HPA (cutin monomer, salicylic acid, and abscisic acid.  go_component endomembrane system|GO:0012505||IEA  go_process response to abscisic acid stimulus|GO:0009737|18657431|IEP  go_process response to salicylic acid stimulus|GO:0009751|18657431|IEP  product GRP23 (GLYCINE-RICH PROTEIN 23)  note GLYCINE-RICH PROTEIN 23 (GRP23); INVOLVED IN: response to abscisic acid stimulus, response to salicylic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT1G04800.1).  protein_id AT2G32690.1p  transcript_id AT2G32690.1  protein_id AT2G32690.1p  transcript_id AT2G32690.1  
At2g32690	chr2:013864137	0.0	C/13864137-13864539,13863934-13864049	AT2G32690.4  CDS  gene_syn ATGRP23, F24L7.17, F24L7_17, GLYCINE-RICH PROTEIN 23, GRP23  gene GRP23  function Glycine-rich protein similar in structure to GRP5. The expression of GRP23 is induced by HPA (cutin monomer, salicylic acid, and abscisic acid.  go_component endomembrane system|GO:0012505||IEA  go_process response to abscisic acid stimulus|GO:0009737|18657431|IEP  go_process response to salicylic acid stimulus|GO:0009751|18657431|IEP  product GRP23 (GLYCINE-RICH PROTEIN 23)  note GLYCINE-RICH PROTEIN 23 (GRP23); INVOLVED IN: response to abscisic acid stimulus, response to salicylic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT1G04800.1).  protein_id AT2G32690.4p  transcript_id AT2G32690.4  protein_id AT2G32690.4p  transcript_id AT2G32690.4  
At2g32690	chr2:013864137	0.0	C/13864137-13864539,13863934-13864112	AT2G32690.3  CDS  gene_syn ATGRP23, F24L7.17, F24L7_17, GLYCINE-RICH PROTEIN 23, GRP23  gene GRP23  function Glycine-rich protein similar in structure to GRP5. The expression of GRP23 is induced by HPA (cutin monomer, salicylic acid, and abscisic acid.  go_component endomembrane system|GO:0012505||IEA  go_process response to abscisic acid stimulus|GO:0009737|18657431|IEP  go_process response to salicylic acid stimulus|GO:0009751|18657431|IEP  product GRP23 (GLYCINE-RICH PROTEIN 23)  note GLYCINE-RICH PROTEIN 23 (GRP23); INVOLVED IN: response to abscisic acid stimulus, response to salicylic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT1G04800.1).  protein_id AT2G32690.3p  transcript_id AT2G32690.3  protein_id AT2G32690.3p  transcript_id AT2G32690.3  
At2g32690	chr2:013864167	0.0	C/13864167-13864539,13863934-13864136	AT2G32690.2  CDS  gene_syn ATGRP23, F24L7.17, F24L7_17, GLYCINE-RICH PROTEIN 23, GRP23  gene GRP23  function Glycine-rich protein similar in structure to GRP5. The expression of GRP23 is induced by HPA (cutin monomer, salicylic acid, and abscisic acid.  go_component endomembrane system|GO:0012505||IEA  go_process response to abscisic acid stimulus|GO:0009737|18657431|IEP  go_process response to salicylic acid stimulus|GO:0009751|18657431|IEP  product GRP23 (GLYCINE-RICH PROTEIN 23)  note GLYCINE-RICH PROTEIN 23 (GRP23); INVOLVED IN: response to abscisic acid stimulus, response to salicylic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT1G04800.1).  protein_id AT2G32690.2p  transcript_id AT2G32690.2  protein_id AT2G32690.2p  transcript_id AT2G32690.2  
At2g32698	chr2:013866205	0.0	W/13866205-13866467	AT2G32698.1  miRNA  gene_syn MICRORNA407, MIR407  gene MIR407  function Encodes a microRNA. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence:TTTAAATCATATACTTTTGGT  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR407 (MICRORNA407); miRNA  transcript_id AT2G32698.1  
At2g32700	chr2:013867235	0.0	W/13867235-13867266,13867341-13867438,13867526-13867635,13867717-13867997,13868093-13868171,13868275-13868386,13868632-13868681,13868767-13869045,13869517-13869591,13869711-13869938,13870117-13870261,13870343-13870452,13870594-13870743,13870826-13870978,13871055-13871174,13871376-13871573,13871701-13871844	AT2G32700.1  CDS  gene_syn F24L7.16, F24L7_16, LEUNIG_HOMOLOG, LUH  gene LUH  function Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG.  go_component cellular_component|GO:0005575||ND  go_process embryonic development|GO:0009790|18390806|IGI  go_process flower development|GO:0009908|18390806|IGI  go_process negative regulation of transcription|GO:0016481|18390806|IPI  go_function molecular_function|GO:0003674||ND  product WD-40 repeat family protein  note LEUNIG_HOMOLOG (LUH); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development, flower development, negative regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif, subgroup (InterPro:IPR013720), WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), LisH dimerisation motif (InterPro:IPR006594); BEST Arabidopsis thaliana protein match is: LUG (LEUNIG); protein binding / protein heterodimerization/ transcription repressor (TAIR:AT4G32551.1); Has 50387 Blast hits to 23689 proteins in 626 species: Archae - 60; Bacteria - 5853; Metazoa - 22707; Fungi - 10040; Plants - 4558; Viruses - 0; Other Eukaryotes - 7169 (source: NCBI BLink).  protein_id AT2G32700.1p  transcript_id AT2G32700.1  protein_id AT2G32700.1p  transcript_id AT2G32700.1  
At2g32700	chr2:013867235	0.0	W/13867235-13867266,13867341-13867438,13867526-13867635,13867717-13867997,13868093-13868171,13868275-13868386,13868632-13868681,13868767-13869045,13869517-13869591,13869711-13869938,13870117-13870261,13870343-13870452,13870594-13870743,13870826-13870978,13871055-13871174,13871376-13871573,13871701-13871844	AT2G32700.2  CDS  gene_syn F24L7.16, F24L7_16, LEUNIG_HOMOLOG, LUH  gene LUH  function Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG.  go_component cellular_component|GO:0005575||ND  go_process embryonic development|GO:0009790|18390806|IGI  go_process flower development|GO:0009908|18390806|IGI  go_process negative regulation of transcription|GO:0016481|18390806|IPI  go_function molecular_function|GO:0003674||ND  product WD-40 repeat family protein  note LEUNIG_HOMOLOG (LUH); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development, flower development, negative regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif, subgroup (InterPro:IPR013720), WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), LisH dimerisation motif (InterPro:IPR006594); BEST Arabidopsis thaliana protein match is: LUG (LEUNIG); protein binding / protein heterodimerization/ transcription repressor (TAIR:AT4G32551.1); Has 50387 Blast hits to 23689 proteins in 626 species: Archae - 60; Bacteria - 5853; Metazoa - 22707; Fungi - 10040; Plants - 4558; Viruses - 0; Other Eukaryotes - 7169 (source: NCBI BLink).  protein_id AT2G32700.2p  transcript_id AT2G32700.2  protein_id AT2G32700.2p  transcript_id AT2G32700.2  
At2g32700	chr2:013867235	0.0	W/13867235-13867266,13867341-13867438,13867526-13867635,13867717-13867997,13868093-13868171,13868275-13868386,13868632-13868681,13868767-13869045,13869517-13869591,13869711-13869938,13870117-13870261,13870343-13870452,13870594-13870743,13870826-13870978,13871055-13871174,13871376-13871573,13871701-13871844	AT2G32700.3  CDS  gene_syn F24L7.16, F24L7_16, LEUNIG_HOMOLOG, LUH  gene LUH  function Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG.  go_component cellular_component|GO:0005575||ND  go_process embryonic development|GO:0009790|18390806|IGI  go_process flower development|GO:0009908|18390806|IGI  go_process negative regulation of transcription|GO:0016481|18390806|IPI  go_function molecular_function|GO:0003674||ND  product WD-40 repeat family protein  note LEUNIG_HOMOLOG (LUH); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development, flower development, negative regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif, subgroup (InterPro:IPR013720), WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), LisH dimerisation motif (InterPro:IPR006594); BEST Arabidopsis thaliana protein match is: LUG (LEUNIG); protein binding / protein heterodimerization/ transcription repressor (TAIR:AT4G32551.1); Has 50387 Blast hits to 23689 proteins in 626 species: Archae - 60; Bacteria - 5853; Metazoa - 22707; Fungi - 10040; Plants - 4558; Viruses - 0; Other Eukaryotes - 7169 (source: NCBI BLink).  protein_id AT2G32700.3p  transcript_id AT2G32700.3  protein_id AT2G32700.3p  transcript_id AT2G32700.3  
At2g32700	chr2:013867235	0.0	W/13867235-13867266,13867341-13867438,13867526-13867635,13867717-13867997,13868093-13868171,13868275-13868386,13868632-13868681,13868767-13869045,13869517-13869591,13869711-13869938,13870117-13870261,13870343-13870452,13870594-13870743,13870826-13870978,13871055-13871174,13871376-13871573,13871701-13871844	AT2G32700.4  CDS  gene_syn F24L7.16, F24L7_16, LEUNIG_HOMOLOG, LUH  gene LUH  function Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG.  go_component cellular_component|GO:0005575||ND  go_process embryonic development|GO:0009790|18390806|IGI  go_process flower development|GO:0009908|18390806|IGI  go_process negative regulation of transcription|GO:0016481|18390806|IPI  go_function molecular_function|GO:0003674||ND  product WD-40 repeat family protein  note LEUNIG_HOMOLOG (LUH); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development, flower development, negative regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif, subgroup (InterPro:IPR013720), WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), LisH dimerisation motif (InterPro:IPR006594); BEST Arabidopsis thaliana protein match is: LUG (LEUNIG); protein binding / protein heterodimerization/ transcription repressor (TAIR:AT4G32551.1); Has 50387 Blast hits to 23689 proteins in 626 species: Archae - 60; Bacteria - 5853; Metazoa - 22707; Fungi - 10040; Plants - 4558; Viruses - 0; Other Eukaryotes - 7169 (source: NCBI BLink).  protein_id AT2G32700.4p  transcript_id AT2G32700.4  protein_id AT2G32700.4p  transcript_id AT2G32700.4  
At2g32700	chr2:013867235	0.0	W/13867235-13867266,13867341-13867438,13867526-13867635,13867717-13867997,13868093-13868171,13868275-13868386,13868632-13868681,13868767-13869045,13869517-13869591,13869711-13869938,13870117-13870261,13870343-13870452,13870594-13870743,13870826-13870978,13871055-13871174,13871376-13871573,13871701-13871844	AT2G32700.5  CDS  gene_syn F24L7.16, F24L7_16, LEUNIG_HOMOLOG, LUH  gene LUH  function Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG.  go_component cellular_component|GO:0005575||ND  go_process embryonic development|GO:0009790|18390806|IGI  go_process flower development|GO:0009908|18390806|IGI  go_process negative regulation of transcription|GO:0016481|18390806|IPI  go_function molecular_function|GO:0003674||ND  product WD-40 repeat family protein  note LEUNIG_HOMOLOG (LUH); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development, flower development, negative regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif, subgroup (InterPro:IPR013720), WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), LisH dimerisation motif (InterPro:IPR006594); BEST Arabidopsis thaliana protein match is: LUG (LEUNIG); protein binding / protein heterodimerization/ transcription repressor (TAIR:AT4G32551.1); Has 50387 Blast hits to 23689 proteins in 626 species: Archae - 60; Bacteria - 5853; Metazoa - 22707; Fungi - 10040; Plants - 4558; Viruses - 0; Other Eukaryotes - 7169 (source: NCBI BLink).  protein_id AT2G32700.5p  transcript_id AT2G32700.5  protein_id AT2G32700.5p  transcript_id AT2G32700.5  
At2g32700	chr2:013867235	0.0	W/13867235-13867266,13867341-13867438,13867526-13867635,13867717-13867997,13868093-13868171,13868275-13868386,13868632-13868681,13868767-13869045,13869517-13869591,13869711-13869938,13870123-13870261,13870343-13870452,13870594-13870743,13870826-13870978,13871055-13871174,13871376-13871573,13871701-13871844	AT2G32700.6  CDS  gene_syn F24L7.16, F24L7_16, LEUNIG_HOMOLOG, LUH  gene LUH  function Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG.  go_component cellular_component|GO:0005575||ND  go_process embryonic development|GO:0009790|18390806|IGI  go_process flower development|GO:0009908|18390806|IGI  go_process negative regulation of transcription|GO:0016481|18390806|IPI  go_function molecular_function|GO:0003674||ND  product WD-40 repeat family protein  note LEUNIG_HOMOLOG (LUH); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development, flower development, negative regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif, subgroup (InterPro:IPR013720), WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), LisH dimerisation motif (InterPro:IPR006594); BEST Arabidopsis thaliana protein match is: LUG (LEUNIG); protein binding / protein heterodimerization/ transcription repressor (TAIR:AT4G32551.1); Has 50208 Blast hits to 23685 proteins in 626 species: Archae - 56; Bacteria - 5869; Metazoa - 22490; Fungi - 10046; Plants - 4596; Viruses - 0; Other Eukaryotes - 7151 (source: NCBI BLink).  protein_id AT2G32700.6p  transcript_id AT2G32700.6  protein_id AT2G32700.6p  transcript_id AT2G32700.6  
At2g32710	chr2:013873496	0.0	W/13873496-13874073,13874945-13875166,13875281-13875350	AT2G32710.1  CDS  gene_syn ACK2, CYCLIN-DEPENDENT KINASE INHIBITOR 2, F24L7.15, F24L7_15, ICK7, INTERACTORS OF CDC2 KINASE 7, KIP-RELATED PROTEIN 4, KRP4  gene KRP4  function Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI). A member of seven KRP genes found in Arabidopsis thaliana. Negative regulator of cell division. Expressed in actively dividing cells.  go_component nucleus|GO:0005634||IEA  go_process negative regulation of cyclin-dependent protein kinase activity|GO:0045736|16376885|IDA  go_process negative regulation of cyclin-dependent protein kinase activity|GO:0045736||TAS  go_process negative regulation of cell cycle|GO:0045786|15037450|TAS  go_function cyclin-dependent protein kinase inhibitor activity|GO:0004861|15037450|TAS  go_function cyclin-dependent protein kinase inhibitor activity|GO:0004861||TAS  go_function cyclin binding|GO:0030332||IPI  product KRP4; cyclin binding / cyclin-dependent protein kinase inhibitor  note KRP4; cyclin binding / cyclin-dependent protein kinase inhibitor; CONTAINS InterPro DOMAIN/s: Cyclin-dependent kinase inhibitor, plant (InterPro:IPR016701), Cyclin-dependent kinase inhibitor (InterPro:IPR003175); BEST Arabidopsis thaliana protein match is: ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE); cyclin binding / cyclin-dependent protein kinase inhibitor (TAIR:AT5G48820.1); Has 184 Blast hits to 184 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 48; Fungi - 4; Plants - 119; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT2G32710.1p  transcript_id AT2G32710.1  protein_id AT2G32710.1p  transcript_id AT2G32710.1  
At2g32710	chr2:013873496	0.0	W/13873496-13874073,13874954-13875166,13875281-13875350	AT2G32710.2  CDS  gene_syn ACK2, CYCLIN-DEPENDENT KINASE INHIBITOR 2, F24L7.15, F24L7_15, ICK7, INTERACTORS OF CDC2 KINASE 7, KIP-RELATED PROTEIN 4, KRP4  gene KRP4  function Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI). A member of seven KRP genes found in Arabidopsis thaliana. Negative regulator of cell division. Expressed in actively dividing cells.  go_component nucleus|GO:0005634||IEA  go_process negative regulation of cyclin-dependent protein kinase activity|GO:0045736|16376885|IDA  go_process negative regulation of cyclin-dependent protein kinase activity|GO:0045736||TAS  go_process negative regulation of cell cycle|GO:0045786|15037450|TAS  go_function cyclin-dependent protein kinase inhibitor activity|GO:0004861|15037450|TAS  go_function cyclin-dependent protein kinase inhibitor activity|GO:0004861||TAS  go_function cyclin binding|GO:0030332||IPI  product KRP4; cyclin binding / cyclin-dependent protein kinase inhibitor  note KRP4; cyclin binding / cyclin-dependent protein kinase inhibitor; CONTAINS InterPro DOMAIN/s: Cyclin-dependent kinase inhibitor (InterPro:IPR003175), Cyclin-dependent kinase inhibitor, plant (InterPro:IPR016701); BEST Arabidopsis thaliana protein match is: ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE); cyclin binding / cyclin-dependent protein kinase inhibitor (TAIR:AT5G48820.1); Has 184 Blast hits to 184 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 50; Fungi - 4; Plants - 119; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT2G32710.2p  transcript_id AT2G32710.2  protein_id AT2G32710.2p  transcript_id AT2G32710.2  
At2g32720	chr2:013878361	0.0	C/13878361-13878447,13877346-13877412,13877013-13877263	AT2G32720.1  CDS  gene_syn ARABIDOPSIS CYTOCHROME B5 ISOFORM B, ATCB5-B, B5  4, CB5-B, CYTOCHROME B5 ISOFORM B, F24L7.14, F24L7_14  gene CB5-B  function member of Cytochromes b5  go_component cellular_component|GO:0005575||ND  go_function heme binding|GO:0020037|17322552|ISS  product CB5-B (CYTOCHROME B5 ISOFORM B); heme binding  note CYTOCHROME B5 ISOFORM B (CB5-B); FUNCTIONS IN: heme binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b5, heme-binding site (InterPro:IPR018506), Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: CB5-D (CYTOCHROME B5 ISOFORM D); heme binding (TAIR:AT5G48810.1); Has 3050 Blast hits to 3021 proteins in 385 species: Archae - 1; Bacteria - 19; Metazoa - 885; Fungi - 1090; Plants - 553; Viruses - 3; Other Eukaryotes - 499 (source: NCBI BLink).  protein_id AT2G32720.1p  transcript_id AT2G32720.1  protein_id AT2G32720.1p  transcript_id AT2G32720.1  
At2g32730	chr2:013880189	0.0	W/13880189-13880334,13880843-13880912,13881141-13881246,13881555-13881663,13881740-13881908,13882241-13882701,13882811-13882946,13883053-13883301,13883387-13883607,13883699-13883957,13884077-13884309,13884388-13884907,13885129-13885464	AT2G32730.1  CDS  gene_syn F24L7.13, F24L7_13  go_function binding|GO:0005488||IEA  go_function enzyme regulator activity|GO:0030234||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_component proteasome regulatory particle, base subcomplex|GO:0008540|9741626|TAS  go_component proteasome regulatory particle, base subcomplex|GO:0008540||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  product 26S proteasome regulatory subunit, putative  note 26S proteasome regulatory subunit, putative; FUNCTIONS IN: enzyme regulator activity, binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cytosol, proteasome regulatory particle, base subcomplex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Proteasome/cyclosome, regulatory subunit (InterPro:IPR002015), Armadillo-type fold (InterPro:IPR016024), 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (InterPro:IPR016642); BEST Arabidopsis thaliana protein match is: 26S proteasome regulatory subunit, putative (TAIR:AT1G04810.1); Has 863 Blast hits to 795 proteins in 201 species: Archae - 10; Bacteria - 48; Metazoa - 318; Fungi - 219; Plants - 82; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).  protein_id AT2G32730.1p  transcript_id AT2G32730.1  protein_id AT2G32730.1p  transcript_id AT2G32730.1  
At2g32740	chr2:013886826	0.0	W/13886826-13888232	AT2G32740.1  CDS  gene_syn F24L7.12, F24L7_12  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product exostosin family protein  note exostosin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: exostosin family protein (TAIR:AT2G32750.1); Has 322 Blast hits to 321 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 4; Plants - 295; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT2G32740.1p  transcript_id AT2G32740.1  protein_id AT2G32740.1p  transcript_id AT2G32740.1  
At2g32750	chr2:013889641	0.0	W/13889641-13891170	AT2G32750.1  CDS  gene_syn F24L7.11, F24L7_11  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product exostosin family protein  note exostosin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: exostosin family protein (TAIR:AT2G32740.1); Has 345 Blast hits to 343 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 4; Plants - 323; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT2G32750.1p  transcript_id AT2G32750.1  protein_id AT2G32750.1p  transcript_id AT2G32750.1  
At2g32760	chr2:013892140	0.0	W/13892140-13892325,13892600-13892806,13893122-13893302,13893523-13893659,13893852-13894079,13894176-13894295	AT2G32760.1  CDS  gene_syn F24L7.10, F24L7_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 147 Blast hits to 147 proteins in 66 species: Archae - 0; Bacteria - 2; Metazoa - 63; Fungi - 55; Plants - 23; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G32760.1p  transcript_id AT2G32760.1  protein_id AT2G32760.1p  transcript_id AT2G32760.1  
At2g32760	chr2:013892642	0.0	W/13892642-13892806,13893122-13893302,13893523-13893659,13893852-13894079,13894176-13894295	AT2G32760.2  CDS  gene_syn F24L7.10, F24L7_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 134 Blast hits to 134 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 55; Plants - 23; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G32760.2p  transcript_id AT2G32760.2  protein_id AT2G32760.2p  transcript_id AT2G32760.2  
At2g32765	chr2:013894968	0.0	W/13894968-13895222,13895328-13895399	AT2G32765.1  CDS  gene_syn ATSUMO5, SMALL UBIQUITINRELATED MODIFIER 5, SUM5, SUMO 5, SUMO5  gene SUMO5  function Encodes a small ubiquitin-like modifier (SUMO) protein that becomes covalently attached to various intracellular protein targets through an isopeptide bond. SUMOylation typically has a post-translational effect on the behavior of the target protein.  go_component chloroplast|GO:0009507||IEA  go_process protein modification process|GO:0006464||IEA  go_function protein tag|GO:0031386|16740136|IDA  product SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5); protein tag  note SMALL UBIQUITINRELATED MODIFIER 5 (SUMO5); FUNCTIONS IN: protein tag; INVOLVED IN: protein modification process; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2); protein binding / protein tag (TAIR:AT5G55160.1); Has 705 Blast hits to 704 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 443; Fungi - 79; Plants - 98; Viruses - 1; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT2G32765.1p  transcript_id AT2G32765.1  protein_id AT2G32765.1p  transcript_id AT2G32765.1  
At2g32770	chr2:013895838	0.0	W/13895838-13896105,13896398-13896965,13897051-13897184,13897365-13897555,13897640-13897912,13898087-13898203	AT2G32770.1  CDS  gene_syn ATPAP13, F24L7.9, F24L7_9, PAP13, PURPLE ACID PHOSPHATASE 13  gene PAP13  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function acid phosphatase activity|GO:0003993|12021284|ISS  go_function acid phosphatase activity|GO:0003993|16244908|ISS  go_function acid phosphatase activity|GO:0003993||ISS  product purple acid phosphatase (PAP13)  note PURPLE ACID PHOSPHATASE 13 (PAP13); FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Purple acid phosphatase, N-terminal (InterPro:IPR015914), Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: PAP15 (PURPLE ACID PHOSPHATASE 15); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT3G07130.1); Has 795 Blast hits to 772 proteins in 130 species: Archae - 3; Bacteria - 50; Metazoa - 162; Fungi - 74; Plants - 421; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT2G32770.1p  transcript_id AT2G32770.1  protein_id AT2G32770.1p  transcript_id AT2G32770.1  
At2g32770	chr2:013895838	0.0	W/13895838-13896105,13896398-13896965,13897051-13897271,13897365-13897555,13897640-13897912,13898087-13898203	AT2G32770.3  CDS  gene_syn ATPAP13, F24L7.9, F24L7_9, PAP13, PURPLE ACID PHOSPHATASE 13  gene PAP13  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function acid phosphatase activity|GO:0003993|12021284|ISS  go_function acid phosphatase activity|GO:0003993|16244908|ISS  go_function acid phosphatase activity|GO:0003993||ISS  product purple acid phosphatase (PAP13)  note PURPLE ACID PHOSPHATASE 13 (PAP13); FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Purple acid phosphatase, N-terminal (InterPro:IPR015914), Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: PAP15 (PURPLE ACID PHOSPHATASE 15); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT3G07130.1); Has 1036 Blast hits to 1025 proteins in 218 species: Archae - 5; Bacteria - 219; Metazoa - 176; Fungi - 56; Plants - 432; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink).  protein_id AT2G32770.3p  transcript_id AT2G32770.3  protein_id AT2G32770.3p  transcript_id AT2G32770.3  
At2g32770	chr2:013896373	0.0	W/13896373-13896965,13897051-13897271,13897365-13897555,13897640-13897921	AT2G32770.2  CDS  gene_syn ATPAP13, F24L7.9, F24L7_9, PAP13, PURPLE ACID PHOSPHATASE 13  gene PAP13  go_process biological_process|GO:0008150||ND  go_function acid phosphatase activity|GO:0003993|12021284|ISS  go_function acid phosphatase activity|GO:0003993|16244908|ISS  go_function acid phosphatase activity|GO:0003993||ISS  product purple acid phosphatase (PAP13)  note PURPLE ACID PHOSPHATASE 13 (PAP13); FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Purple acid phosphatase, N-terminal (InterPro:IPR015914), Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: PAP15 (PURPLE ACID PHOSPHATASE 15); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT3G07130.1); Has 1021 Blast hits to 1014 proteins in 215 species: Archae - 5; Bacteria - 213; Metazoa - 175; Fungi - 56; Plants - 427; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink).  protein_id AT2G32770.2p  transcript_id AT2G32770.2  protein_id AT2G32770.2p  transcript_id AT2G32770.2  
At2g32780	chr2:013900624	0.0	C/13900624-13901870,13898777-13900540,13898431-13898671	AT2G32780.1  CDS  gene_syn ATUBP1, F24L7.8, F24L7_8, UBIQUITIN-SPECIFIC PROTEASE 1, UBP1  gene UBP1  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_function ubiquitin-specific protease activity|GO:0004843||ISS  product UBP1 (UBIQUITIN-SPECIFIC PROTEASE 1); ubiquitin thiolesterase/ ubiquitin-specific protease/ zinc ion binding  note UBIQUITIN-SPECIFIC PROTEASE 1 (UBP1); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, UBP-type (InterPro:IPR001607), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: UBP2 (UBIQUITIN-SPECIFIC PROTEASE 2); ubiquitin-specific protease (TAIR:AT1G04860.1); Has 7829 Blast hits to 5088 proteins in 192 species: Archae - 0; Bacteria - 10; Metazoa - 4458; Fungi - 1239; Plants - 755; Viruses - 5; Other Eukaryotes - 1362 (source: NCBI BLink).  protein_id AT2G32780.1p  transcript_id AT2G32780.1  protein_id AT2G32780.1p  transcript_id AT2G32780.1  
At2g32785	chr2:013903272	0.0	W/13903272-13903487	AT2G32785.1  CDS  function Encodes a Rapid ALkalinization Factor (RALF) family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32788.1); Has 3 Blast hits to 3 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G32785.1p  transcript_id AT2G32785.1  protein_id AT2G32785.1p  transcript_id AT2G32785.1  
At2g32788	chr2:013904916	0.0	W/13904916-13905110	AT2G32788.1  CDS  function Encodes a Rapid ALkalinization Factor (RALF) family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32785.1); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G32788.1p  transcript_id AT2G32788.1  protein_id AT2G32788.1p  transcript_id AT2G32788.1  
At2g32790	chr2:013905969	0.0	C/13905969-13906271,13905649-13905879	AT2G32790.1  CDS  gene_syn F24L7.7, F24L7_7  go_process post-translational protein modification|GO:0043687||IEA  go_process regulation of protein metabolic process|GO:0051246||IEA  go_function small conjugating protein ligase activity|GO:0019787||IEA  go_process protein modification process|GO:0006464||ISS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product ubiquitin-conjugating enzyme, putative  note ubiquitin-conjugating enzyme, putative; FUNCTIONS IN: ubiquitin-protein ligase activity, small conjugating protein ligase activity; INVOLVED IN: regulation of protein metabolic process, protein modification process, post-translational protein modification; EXPRESSED IN: embryo, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC11 (UBIQUITIN-CONJUGATING ENZYME 11); ubiquitin-protein ligase (TAIR:AT3G08690.1); Has 7147 Blast hits to 7137 proteins in 306 species: Archae - 0; Bacteria - 0; Metazoa - 3506; Fungi - 1366; Plants - 1050; Viruses - 19; Other Eukaryotes - 1206 (source: NCBI BLink).  protein_id AT2G32790.1p  transcript_id AT2G32790.1  protein_id AT2G32790.1p  transcript_id AT2G32790.1  
At2g32795	chr2:013909423	0.0	W/13909423-13910910	AT2G32795.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G32795.1  
At2g32800	chr2:013916478	0.0	W/13916478-13919033	AT2G32800.1  CDS  gene_syn AP4.3A, F24L7.6, F24L7_6  gene AP4.3A  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function ATP binding|GO:0005524||ISS  product AP4.3A; ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note AP4.3A; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: lectin protein kinase, putative (TAIR:AT3G53810.1); Has 111168 Blast hits to 73136 proteins in 2997 species: Archae - 51; Bacteria - 9911; Metazoa - 45746; Fungi - 7567; Plants - 30942; Viruses - 390; Other Eukaryotes - 16561 (source: NCBI BLink).  protein_id AT2G32800.1p  transcript_id AT2G32800.1  protein_id AT2G32800.1p  transcript_id AT2G32800.1  
At2g32810	chr2:013925125	0.0	C/13925125-13925325,13924936-13925031,13924741-13924853,13924584-13924650,13924371-13924463,13923993-13924136,13923615-13923703,13923352-13923457,13922905-13922992,13922690-13922811,13922178-13922354,13921588-13921820,13921304-13921419,13920988-13921085,13920798-13920908,13920549-13920659,13920216-13920424,13919798-13920146,13919410-13919550	AT2G32810.1  CDS  gene_syn BGAL9, Beta galactosidase 9, F24L7.5, F24L7_5, beta-galactosidase 9  gene BGAL9  function putative beta-galactosidase  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process lactose catabolic process|GO:0005990||IEA  go_process lactose catabolic process, using glucoside 3-dehydrogenase|GO:0019513||IEA  go_process lactose catabolic process via UDP-galactose|GO:0019515||IEA  go_function catalytic activity|GO:0003824||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  go_function sugar binding|GO:0005529||IEA  go_function cation binding|GO:0043169||IEA  go_function beta-galactosidase activity|GO:0004565||ISS  product BGAL9 (Beta galactosidase 9); beta-galactosidase/ catalytic/ cation binding / sugar binding  note Beta galactosidase 9 (BGAL9); FUNCTIONS IN: sugar binding, cation binding, beta-galactosidase activity, catalytic activity; INVOLVED IN: lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process; LOCATED IN: plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: BGAL8 (beta-galactosidase 8); beta-galactosidase/ catalytic/ cation binding / sugar binding (TAIR:AT2G28470.1); Has 1868 Blast hits to 1670 proteins in 270 species: Archae - 11; Bacteria - 407; Metazoa - 876; Fungi - 117; Plants - 385; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT2G32810.1p  transcript_id AT2G32810.1  protein_id AT2G32810.1p  transcript_id AT2G32810.1  
At2g32820	chr2:013926037	0.0	W/13926037-13926786	AT2G32820.1  CDS  gene_syn F24L7.4, F24L7_4  go_component nucleus|GO:0005634||IEA  go_process transcription|GO:0006350||IEA  product unknown protein  note INVOLVED IN: transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: TFIIS N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33090.1); Has 46 Blast hits to 46 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G32820.1p  transcript_id AT2G32820.1  protein_id AT2G32820.1p  transcript_id AT2G32820.1  
At2g32830	chr2:013929354	0.0	C/13929354-13929657,13928704-13929176,13927754-13928605	AT2G32830.1  CDS  gene_syn F24L7.2, PHT5  gene PHT5  function phosphate transporter  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process phosphate transport|GO:0006817||IEA  go_function inorganic phosphate transmembrane transporter activity|GO:0005315|9872450|ISS  go_function inorganic phosphate transmembrane transporter activity|GO:0005315||ISS  go_function phosphate transmembrane transporter activity|GO:0015114||ISS  product PHT5; inorganic phosphate transmembrane transporter/ phosphate transmembrane transporter  note PHT5; FUNCTIONS IN: phosphate transmembrane transporter activity, inorganic phosphate transmembrane transporter activity; INVOLVED IN: transport, phosphate transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Phosphate permease (InterPro:IPR004738), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ATPT2 (ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2); carbohydrate transmembrane transporter/ inorganic phosphate transmembrane transporter/ phosphate transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT2G38940.1); Has 17236 Blast hits to 17169 proteins in 1199 species: Archae - 299; Bacteria - 11544; Metazoa - 1376; Fungi - 2409; Plants - 901; Viruses - 2; Other Eukaryotes - 705 (source: NCBI BLink).  protein_id AT2G32830.1p  transcript_id AT2G32830.1  protein_id AT2G32830.1p  transcript_id AT2G32830.1  
At2g32835	chr2:013931166	0.0	C/13931166-13931453	AT2G32835.1  CDS  gene_syn RALF-LIKE 16, RALFL16  gene RALFL16  function Rapid alkalinization factor (RALF) family protein. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  go_component apoplast|GO:0048046|12611624|ISS  go_process cell-cell signaling|GO:0007267|12611624|ISS  go_function signal transducer activity|GO:0004871|12611624|TAS  product RALFL16 (RALF-LIKE 16); signal transducer  note RALF-LIKE 16 (RALFL16); FUNCTIONS IN: signal transducer activity; INVOLVED IN: cell-cell signaling; LOCATED IN: apoplast; CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALFL6 (RALF-LIKE 6); signal transducer (TAIR:AT1G60625.1); Has 21 Blast hits to 21 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G32835.1p  transcript_id AT2G32835.1  protein_id AT2G32835.1p  transcript_id AT2G32835.1  
At2g32840	chr2:013934282	0.0	C/13934282-13934836,13933986-13934038,13933856-13933895,13933681-13933758,13933428-13933577	AT2G32840.2  CDS  gene_syn T21L14.22, T21L14_22  go_component chloroplast|GO:0009507||IEA  product proline-rich family protein  note proline-rich family protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G04930.1); Has 728 Blast hits to 635 proteins in 143 species: Archae - 4; Bacteria - 106; Metazoa - 178; Fungi - 109; Plants - 161; Viruses - 37; Other Eukaryotes - 133 (source: NCBI BLink).  protein_id AT2G32840.2p  transcript_id AT2G32840.2  protein_id AT2G32840.2p  transcript_id AT2G32840.2  
At2g32840	chr2:013934282	0.0	C/13934282-13934836,13933986-13934038,13933856-13933895,13933681-13933758,13933464-13933577,13933291-13933370,13933101-13933194	AT2G32840.1  CDS  gene_syn T21L14.22, T21L14_22  go_component chloroplast|GO:0009507||IEA  product proline-rich family protein  note proline-rich family protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G04930.1); Has 733 Blast hits to 646 proteins in 145 species: Archae - 4; Bacteria - 102; Metazoa - 178; Fungi - 111; Plants - 168; Viruses - 37; Other Eukaryotes - 133 (source: NCBI BLink).  protein_id AT2G32840.1p  transcript_id AT2G32840.1  protein_id AT2G32840.1p  transcript_id AT2G32840.1  
At2g32850	chr2:013937511	0.0	C/13937511-13937977,13937255-13937420,13937119-13937169,13936847-13937029,13936674-13936767,13935931-13936595,13935448-13935834	AT2G32850.2  CDS  gene_syn T21L14.21, T21L14_21  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function ATP binding|GO:0005524||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATPK3; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G08160.1); Has 67658 Blast hits to 66473 proteins in 1675 species: Archae - 30; Bacteria - 5982; Metazoa - 29177; Fungi - 6997; Plants - 11346; Viruses - 187; Other Eukaryotes - 13939 (source: NCBI BLink).  protein_id AT2G32850.2p  transcript_id AT2G32850.2  protein_id AT2G32850.2p  transcript_id AT2G32850.2  
At2g32850	chr2:013937511	0.0	C/13937511-13937977,13937255-13937420,13937119-13937169,13936847-13937029,13936674-13936767,13935931-13936595,13935702-13935834,13935448-13935641	AT2G32850.1  CDS  gene_syn T21L14.21, T21L14_21  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function ATP binding|GO:0005524||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATPK3; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G08160.1); Has 67123 Blast hits to 66167 proteins in 1671 species: Archae - 30; Bacteria - 5919; Metazoa - 28996; Fungi - 6950; Plants - 11334; Viruses - 187; Other Eukaryotes - 13707 (source: NCBI BLink).  protein_id AT2G32850.1p  transcript_id AT2G32850.1  protein_id AT2G32850.1p  transcript_id AT2G32850.1  
At2g32860	chr2:013940233	0.0	W/13940233-13940571,13940655-13940724,13940818-13940876,13940986-13941061,13941195-13941272,13941387-13941474,13941592-13941847,13941987-13942108,13942246-13942463,13942579-13942607,13942830-13942932,13943034-13943142,13943302-13943596	AT2G32860.1  CDS  gene_syn BETA GLUCOSIDASE 33, BGLU33, T21L14.20, T21L14_20  gene BGLU33  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU33 (BETA GLUCOSIDASE 33); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 33 (BGLU33); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: DIN2 (DARK INDUCIBLE 2); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT3G60140.1); Has 5725 Blast hits to 5490 proteins in 797 species: Archae - 102; Bacteria - 3100; Metazoa - 602; Fungi - 133; Plants - 845; Viruses - 0; Other Eukaryotes - 943 (source: NCBI BLink).  protein_id AT2G32860.1p  transcript_id AT2G32860.1  protein_id AT2G32860.1p  transcript_id AT2G32860.1  
At2g32860	chr2:013940233	0.0	W/13940233-13940571,13940655-13940724,13940818-13940876,13940986-13941061,13941195-13941272,13941387-13941474,13941592-13941851,13941994-13942108,13942246-13942463,13942795-13942932,13943034-13943142,13943302-13943596	AT2G32860.2  CDS  gene_syn BETA GLUCOSIDASE 33, BGLU33, T21L14.20, T21L14_20  gene BGLU33  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU33 (BETA GLUCOSIDASE 33); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 33 (BGLU33); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: DIN2 (DARK INDUCIBLE 2); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT3G60140.1); Has 5729 Blast hits to 5490 proteins in 797 species: Archae - 102; Bacteria - 3102; Metazoa - 603; Fungi - 133; Plants - 845; Viruses - 0; Other Eukaryotes - 944 (source: NCBI BLink).  protein_id AT2G32860.2p  transcript_id AT2G32860.2  protein_id AT2G32860.2p  transcript_id AT2G32860.2  
At2g32870	chr2:013946446	0.0	C/13946446-13946776,13946219-13946348,13945974-13946125,13945566-13945866,13945256-13945419,13944968-13945140	AT2G32870.1  CDS  gene_syn T21L14.19, T21L14_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT2G32880.1); Has 393 Blast hits to 350 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 73; Fungi - 2; Plants - 299; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT2G32870.1p  transcript_id AT2G32870.1  protein_id AT2G32870.1p  transcript_id AT2G32870.1  
At2g32880	chr2:013950475	0.0	C/13950475-13950505,13950258-13950387,13950015-13950166,13949619-13949922,13949241-13949407,13948953-13949125	AT2G32880.1  CDS  gene_syn T21L14.18, T21L14_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT2G32870.1); Has 270 Blast hits to 246 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 259; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT2G32880.1p  transcript_id AT2G32880.1  protein_id AT2G32880.1p  transcript_id AT2G32880.1  
At2g32885	chr2:013952262	0.0	W/13952262-13952480	AT2G32885.1  CDS  function Encodes a Rapid ALkalinization Factor (RALF) family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: RALFL20 (RALF-LIKE 20); signal transducer (TAIR:AT2G34825.1); Has 14 Blast hits to 14 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G32885.1p  transcript_id AT2G32885.1  protein_id AT2G32885.1p  transcript_id AT2G32885.1  
At2g32890	chr2:013953058	0.0	C/13953058-13953291	AT2G32890.1  CDS  gene_syn RALF-LIKE 17, RALFL17, T21L14.17, T21L14_17  gene RALFL17  function Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. This gene is contained within a highly AT-rich repetitive sequence region.  go_component apoplast|GO:0048046|12611624|ISS  go_process cell-cell signaling|GO:0007267|12611624|ISS  go_function signal transducer activity|GO:0004871|12611624|TAS  product RALFL17 (RALF-LIKE 17); signal transducer  note RALF-LIKE 17 (RALFL17); FUNCTIONS IN: signal transducer activity; INVOLVED IN: cell-cell signaling; LOCATED IN: apoplast; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G32890.1p  transcript_id AT2G32890.1  protein_id AT2G32890.1p  transcript_id AT2G32890.1  
At2g32900	chr2:013953807	0.0	W/13953807-13954364,13954463-13954600,13954708-13954881,13955016-13955177,13955303-13955533,13955624-13955737,13955817-13955909,13956042-13956137,13956289-13956417,13956514-13956591,13956683-13956841,13956923-13957052,13957166-13957248,13957387-13957470	AT2G32900.1  CDS  gene_syn ATZW10, T21L14.16, T21L14_16  gene ATZW10  function homologous to Drosophila ZW10, a centromere/kinetochore protein involved in chromosome segregation  go_component chromosome, centromeric region|GO:0000775||IEA  go_component nucleus|GO:0005634||IEA  go_process chromosome segregation|GO:0007059|9298984|ISS  product ATZW10  note ATZW10; INVOLVED IN: chromosome segregation; LOCATED IN: chromosome, centromeric region, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Centromere/kinetochore protein Zw10 (InterPro:IPR009361); Has 195 Blast hits to 183 proteins in 88 species: Archae - 0; Bacteria - 2; Metazoa - 111; Fungi - 55; Plants - 15; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT2G32900.1p  transcript_id AT2G32900.1  protein_id AT2G32900.1p  transcript_id AT2G32900.1  
At2g32905	chr2:013958449	0.0	W/13958449-13959066	AT2G32905.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G27410.1); Has 43 Blast hits to 43 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G32905.1p  transcript_id AT2G32905.1  protein_id AT2G32905.1p  transcript_id AT2G32905.1  
At2g32910	chr2:013959685	0.0	W/13959685-13960869,13961002-13961118,13961216-13961989	AT2G32910.1  CDS  gene_syn T21L14.15, T21L14_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Development and cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G61910.3); Has 954 Blast hits to 804 proteins in 137 species: Archae - 0; Bacteria - 69; Metazoa - 446; Fungi - 64; Plants - 191; Viruses - 0; Other Eukaryotes - 184 (source: NCBI BLink).  protein_id AT2G32910.1p  transcript_id AT2G32910.1  protein_id AT2G32910.1p  transcript_id AT2G32910.1  
At2g32920	chr2:013965278	0.0	C/13965278-13965406,13964933-13965091,13964664-13964777,13964014-13964183,13963812-13963911,13963387-13963563,13963142-13963287,13962770-13962916,13962502-13962682	AT2G32920.1  CDS  gene_syn ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, ATPDI9, ATPDIL2-3, PDI-LIKE 2-3, PDI9, PROTEIN DISULFIDE ISOMERASE 9, T21L14.14, T21L14_14  gene ATPDIL2-3  function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). AtIRE1-2 does not appear to be required for this response, but the atbzip60 mutant has a diminished response.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process response to endoplasmic reticulum stress|GO:0034976|18574595|IEP  go_function protein disulfide isomerase activity|GO:0003756|18574595|ISS  go_function protein disulfide isomerase activity|GO:0003756||ISS  product ATPDIL2-3 (PDI-LIKE 2-3); protein disulfide isomerase  note PDI-LIKE 2-3 (ATPDIL2-3); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: response to endoplasmic reticulum stress; LOCATED IN: endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Disulphide isomerase (InterPro:IPR005788), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATPDIL2-2 (PDI-LIKE 2-2); protein disulfide isomerase (TAIR:AT1G04980.1); Has 24322 Blast hits to 12764 proteins in 1693 species: Archae - 224; Bacteria - 9699; Metazoa - 4821; Fungi - 1309; Plants - 1640; Viruses - 31; Other Eukaryotes - 6598 (source: NCBI BLink).  protein_id AT2G32920.1p  transcript_id AT2G32920.1  protein_id AT2G32920.1p  transcript_id AT2G32920.1  
At2g32930	chr2:013968353	0.0	C/13968353-13968419,13967765-13967925,13967628-13967684,13967347-13967451,13966963-13967259,13966551-13966787,13965990-13966427	AT2G32930.1  CDS  gene_syn T21L14.13, T21L14_13, ZFN2, ZINC FINGER NUCLEASE 2  gene ZFN2  function Encodes a zinc finger protein.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function DNA binding|GO:0003677|15677315|TAS  go_function nuclease activity|GO:0004518|15677315|TAS  product ZFN2 (ZINC FINGER NUCLEASE 2); DNA binding / nuclease/ nucleic acid binding  note ZINC FINGER NUCLEASE 2 (ZFN2); FUNCTIONS IN: DNA binding, nucleic acid binding, nuclease activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein (TAIR:AT1G04990.2); Has 1051 Blast hits to 742 proteins in 122 species: Archae - 0; Bacteria - 2; Metazoa - 420; Fungi - 102; Plants - 423; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT2G32930.1p  transcript_id AT2G32930.1  protein_id AT2G32930.1p  transcript_id AT2G32930.1  
At2g32940	chr2:013976674	0.0	C/13976674-13976856,13976381-13976586,13976065-13976283,13975746-13975879,13975542-13975639,13975357-13975454,13975115-13975274,13974898-13975014,13974713-13974820,13974561-13974623,13974375-13974488,13974113-13974278,13973925-13974037,13973697-13973834,13973463-13973599,13973314-13973379,13973161-13973224,13972947-13973058,13972782-13972855,13972602-13972696,13972482-13972513,13972218-13972357	AT2G32940.1  CDS  gene_syn AGO6, ARGONAUTE 6, T21L14.12, T21L14_12  gene AGO6  function Encodes a nuclear localized 879-amino-acid protein that contains conserved PAZ and PIWI domains that is important for the accumulation of specific heterochromatin-related siRNAs, and for DNA methylation and transcriptional gene silencing.  go_function nucleic acid binding|GO:0003676||IEA  go_component nucleus|GO:0005634|17332757|IDA  go_process DNA methylation|GO:0006306|17332757|IMP  go_process chromatin silencing|GO:0006342|17332757|IGI  go_process RNA interference, production of siRNA|GO:0030422|17332757|IMP  product AGO6 (ARGONAUTE 6); nucleic acid binding  note ARGONAUTE 6 (AGO6); FUNCTIONS IN: nucleic acid binding; INVOLVED IN: chromatin silencing, RNA interference, production of siRNA, DNA methylation; LOCATED IN: nucleus; EXPRESSED IN: cotyledon, root; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Argonaute and Dicer protein, PAZ (InterPro:IPR003100); BEST Arabidopsis thaliana protein match is: PAZ domain-containing protein / piwi domain-containing protein (TAIR:AT5G21150.1); Has 1403 Blast hits to 1371 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 849; Fungi - 171; Plants - 259; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).  protein_id AT2G32940.1p  transcript_id AT2G32940.1  protein_id AT2G32940.1p  transcript_id AT2G32940.1  
At2g32950	chr2:013978000	0.0	W/13978000-13978317,13978657-13978734,13978873-13979028,13979286-13979636,13980207-13980364,13980459-13980524,13981052-13981130,13981421-13981576,13981673-13981771,13982378-13982482,13982625-13982804,13982890-13983000,13983112-13983282	AT2G32950.1  CDS  gene_syn ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, ATCOP1, CONSTITUTIVE PHOTOMORPHOGENIC 1, COP1, DEETIOLATED MUTANT 340, DET340, EMB168, EMBRYO DEFECTIVE 168, FUS1, FUSCA 1, T21L14.11, T21L14_11  gene COP1  function Represses photomorphogenesis and induces skotomorphogenesis in the dark. Contains a ring finger zinc-binding motif, a coiled-coil domain, and several WD-40 repeats, similar to G-beta proteins. The C-terminus has homology to TAFII80, a subunit of the TFIID component of the RNA polymerase II of Drosophila. Nuclear localization in the dark and cytoplasmic in the light.  go_component nuclear ubiquitin ligase complex|GO:0000152|10839542|TAS  go_component nucleus|GO:0005634|10480941|IMP  go_component nucleus|GO:0005634|11080276|IDA  go_component nucleus|GO:0005634|16829591|IDA  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process DNA repair|GO:0006281|18434413|IMP  go_process photomorphogenesis|GO:0009640|10201077|TAS  go_process photomorphogenesis|GO:0009640|11080276|TAS  go_process shade avoidance|GO:0009641|8205001|IMP  go_process skotomorphogenesis|GO:0009647|11080276|TAS  go_process positive regulation of flavonoid biosynthetic process|GO:0009963|16829591|IMP  go_process regulation of stomatal movement|GO:0010119|16093319|IGI  go_process regulation of stomatal movement|GO:0010119|16093319|IMP  go_process response to UV-B|GO:0010224|16829591|IMP  go_process anthocyanin metabolic process|GO:0046283|17217468|IMP  go_process photoperiodism, flowering|GO:0048573|18388858|IMP  go_function ubiquitin-protein ligase activity|GO:0004842|15705947|IDA  go_function protein binding|GO:0005515|15705947|IPI  product COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1); protein binding / ubiquitin-protein ligase  note CONSTITUTIVE PHOTOMORPHOGENIC 1 (COP1); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: in 9 processes; LOCATED IN: nuclear ubiquitin ligase complex, nucleus, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), WD40 repeat (InterPro:IPR001680), WD40 repeat-like (InterPro:IPR011046), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: SPA4 (SPA1-RELATED 4); protein binding / signal transducer (TAIR:AT1G53090.2); Has 31936 Blast hits to 20932 proteins in 591 species: Archae - 20; Bacteria - 3146; Metazoa - 15319; Fungi - 5886; Plants - 2891; Viruses - 45; Other Eukaryotes - 4629 (source: NCBI BLink).  protein_id AT2G32950.1p  transcript_id AT2G32950.1  protein_id AT2G32950.1p  transcript_id AT2G32950.1  
At2g32960	chr2:013987976	0.0	W/13987976-13988265,13988400-13988499,13988673-13988768,13990232-13990289,13990389-13990432,13990535-13990720	AT2G32960.1  CDS  gene_syn T21L14.10, T21L14_10  go_process dephosphorylation|GO:0016311||IEA  go_function protein tyrosine phosphatase activity|GO:0004725||IEA  go_function phosphatase activity|GO:0016791||IEA  go_component cellular_component|GO:0005575||ND  go_function catalytic activity|GO:0003824||ISS  product tyrosine specific protein phosphatase family protein  note tyrosine specific protein phosphatase family protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, catalytic activity; INVOLVED IN: dephosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Protein-tyrosine phosphatase (InterPro:IPR000387), Protein-tyrosine phosphatase, SIW14-like (InterPro:IPR004861); BEST Arabidopsis thaliana protein match is: tyrosine specific protein phosphatase family protein (TAIR:AT1G05000.2); Has 410 Blast hits to 402 proteins in 85 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 247; Plants - 81; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT2G32960.1p  transcript_id AT2G32960.1  protein_id AT2G32960.1p  transcript_id AT2G32960.1  
At2g32970	chr2:013993894	0.0	C/13993894-13994082,13993662-13993809,13992561-13993499,13992234-13992472,13992067-13992140,13991867-13991975,13991744-13991779	AT2G32970.1  CDS  gene_syn T21L14.9, T21L14_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 76 Blast hits to 74 proteins in 38 species: Archae - 0; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 28; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT2G32970.1p  transcript_id AT2G32970.1  protein_id AT2G32970.1p  transcript_id AT2G32970.1  
At2g32980	chr2:013999593	0.0	C/13999593-13999715,13999135-13999260,13998871-13998975,13998529-13998597,13998297-13998410,13997569-13997922	AT2G32980.1  CDS  gene_syn T21L14.8, T21L14_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 50 Blast hits to 50 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G32980.1p  transcript_id AT2G32980.1  protein_id AT2G32980.1p  transcript_id AT2G32980.1  
At2g32990	chr2:014003361	0.0	W/14003361-14003600,14003891-14004304,14004414-14004668,14005176-14005844	AT2G32990.1  CDS  gene_syn Arabidopsis thaliana glycosyl hydrolase 9B8, AtGH9B8, T21L14.7, T21L14_7  gene AtGH9B8  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product AtGH9B8 (Arabidopsis thaliana glycosyl hydrolase 9B8); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds  note Arabidopsis thaliana glycosyl hydrolase 9B8 (AtGH9B8); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: AtGH9C2 (Arabidopsis thaliana glycosyl hydrolase 9C2); carbohydrate binding / catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G64390.1); Has 1108 Blast hits to 1103 proteins in 191 species: Archae - 0; Bacteria - 304; Metazoa - 140; Fungi - 14; Plants - 622; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT2G32990.1p  transcript_id AT2G32990.1  protein_id AT2G32990.1p  transcript_id AT2G32990.1  
At2g33000	chr2:014006195	0.0	W/14006195-14006724,14006839-14006914,14007096-14007592,14007709-14007811,14008002-14008322	AT2G33000.1  CDS  gene_syn T21L14.6, T21L14_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ubiquitin-associated (UBA)/TS-N domain-containing protein-related  note ubiquitin-associated (UBA)/TS-N domain-containing protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, leaf whorl, male gametophyte, flower; EXPRESSED DURING: M germinated pollen stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: ubiquitin-associated (UBA)/TS-N domain-containing protein (TAIR:AT2G33010.1); Has 15 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G33000.1p  transcript_id AT2G33000.1  protein_id AT2G33000.1p  transcript_id AT2G33000.1  
At2g33006	chr2:014010013	0.0	C/14010013-14010201	AT2G33006.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G33006.1p  transcript_id AT2G33006.1  protein_id AT2G33006.1p  transcript_id AT2G33006.1  
At2g33010	chr2:014010892	0.0	W/14010892-14011616,14011722-14011950,14012010-14012551,14012658-14012724,14012860-14013246	AT2G33010.1  CDS  gene_syn T21L14.2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ubiquitin-associated (UBA)/TS-N domain-containing protein  note ubiquitin-associated (UBA)/TS-N domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: ubiquitin-associated (UBA)/TS-N domain-containing protein-related (TAIR:AT2G33000.1); Has 20 Blast hits to 12 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 1; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G33010.1p  transcript_id AT2G33010.1  protein_id AT2G33010.1p  transcript_id AT2G33010.1  
At2g33020	chr2:014016099	0.0	C/14016099-14016516,14013874-14016050	AT2G33020.1  CDS  gene_syn AtRLP24, Receptor Like Protein 24, T21L14.1  gene AtRLP24  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  go_function kinase activity|GO:0016301||ISS  product AtRLP24 (Receptor Like Protein 24); kinase/ protein binding  note Receptor Like Protein 24 (AtRLP24); FUNCTIONS IN: protein binding, kinase activity; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: root, cultured cell; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP23 (Receptor Like Protein 23); kinase/ protein binding (TAIR:AT2G32680.1); Has 63446 Blast hits to 18825 proteins in 798 species: Archae - 40; Bacteria - 4657; Metazoa - 17758; Fungi - 707; Plants - 35463; Viruses - 17; Other Eukaryotes - 4804 (source: NCBI BLink).  protein_id AT2G33020.1p  transcript_id AT2G33020.1  protein_id AT2G33020.1p  transcript_id AT2G33020.1  
At2g33030	chr2:014017684	0.0	C/14017684-14018340	AT2G33030.1  CDS  gene_syn AtRLP25, Receptor Like Protein 25, T21L14.3, T21L14_3  gene AtRLP25  go_component cellular_component|GO:0005575||ND  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product AtRLP25 (Receptor Like Protein 25); protein binding  note Receptor Like Protein 25 (AtRLP25); FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP20 (Receptor Like Protein 20); kinase/ protein binding (TAIR:AT2G25440.1); Has 37009 Blast hits to 7264 proteins in 423 species: Archae - 6; Bacteria - 493; Metazoa - 497; Fungi - 59; Plants - 34435; Viruses - 0; Other Eukaryotes - 1519 (source: NCBI BLink).  protein_id AT2G33030.1p  transcript_id AT2G33030.1  protein_id AT2G33030.1p  transcript_id AT2G33030.1  
At2g33040	chr2:014020950	0.0	C/14020950-14021047,14020505-14020548,14020241-14020393,14019928-14020041,14019718-14019845,14019484-14019606,14019265-14019384,14018978-14019175	AT2G33040.1  CDS  gene_syn T21L14.5  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component mitochondrion|GO:0005739|15276431|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_function hydrogen ion transporting ATP synthase activity, rotational mechanism|GO:0046933||IEA  go_function proton-transporting ATPase activity, rotational mechanism|GO:0046961||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component mitochondrion|GO:0005739|12681508|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component membrane|GO:0016020||ISS  go_process ATP synthesis coupled proton transport|GO:0015986||ISS  go_process proton transport|GO:0015992||ISS  product ATP synthase gamma chain, mitochondrial (ATPC)  note ATP synthase gamma chain, mitochondrial (ATPC); FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: proton transport, ATP synthesis coupled proton transport; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, gamma subunit (InterPro:IPR000131); BEST Arabidopsis thaliana protein match is: ATPC1; enzyme regulator (TAIR:AT4G04640.1); Has 6854 Blast hits to 6853 proteins in 1574 species: Archae - 5; Bacteria - 3135; Metazoa - 212; Fungi - 103; Plants - 101; Viruses - 0; Other Eukaryotes - 3298 (source: NCBI BLink).  protein_id AT2G33040.1p  transcript_id AT2G33040.1  protein_id AT2G33040.1p  transcript_id AT2G33040.1  
At2g33050	chr2:014021870	0.0	W/14021870-14024272	AT2G33050.1  CDS  gene_syn AtRLP26, F25I18.21, F25I18_21, Receptor Like Protein 26  gene AtRLP26  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  go_function kinase activity|GO:0016301||ISS  product AtRLP26 (Receptor Like Protein 26); kinase/ protein binding  note Receptor Like Protein 26 (AtRLP26); FUNCTIONS IN: protein binding, kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP27 (Receptor Like Protein 27); kinase/ protein binding (TAIR:AT2G33060.1); Has 55505 Blast hits to 17830 proteins in 774 species: Archae - 37; Bacteria - 3845; Metazoa - 15419; Fungi - 606; Plants - 31192; Viruses - 16; Other Eukaryotes - 4390 (source: NCBI BLink).  protein_id AT2G33050.1p  transcript_id AT2G33050.1  protein_id AT2G33050.1p  transcript_id AT2G33050.1  
At2g33051	chr2:014023895	0.0	C/14023895-14025085	AT2G33051.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G33050  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G33051.1  
At2g33060	chr2:014025661	0.0	W/14025661-14028087	AT2G33060.1  CDS  gene_syn AtRLP27, F25I18.20, F25I18_20, Receptor Like Protein 27  gene AtRLP27  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  go_function kinase activity|GO:0016301||ISS  product AtRLP27 (Receptor Like Protein 27); kinase/ protein binding  note Receptor Like Protein 27 (AtRLP27); FUNCTIONS IN: protein binding, kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP26 (Receptor Like Protein 26); kinase/ protein binding (TAIR:AT2G33050.1); Has 59782 Blast hits to 19277 proteins in 809 species: Archae - 35; Bacteria - 4398; Metazoa - 19261; Fungi - 725; Plants - 30805; Viruses - 24; Other Eukaryotes - 4534 (source: NCBI BLink).  protein_id AT2G33060.1p  transcript_id AT2G33060.1  protein_id AT2G33060.1p  transcript_id AT2G33060.1  
At2g33070	chr2:014030740	0.0	C/14030740-14030934,14030391-14030663,14029350-14030297	AT2G33070.1  CDS  gene_syn ATNSP2, F25I18.19, F25I18_19, NITRILE SPECIFIER PROTEIN 2, NITRILE-SPECIFIER PROTEIN 2, NSP2  gene NSP2  function Encodes a nitrile-specifier protein NSP2. NSP2 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation.  go_component cellular_component|GO:0005575||ND  go_process glucosinolate catabolic process|GO:0019762|18987211|IDA  go_process nitrile biosynthetic process|GO:0080028|18987211|IDA  go_function molecular_function|GO:0003674||ND  product NSP2 (NITRILE SPECIFIER PROTEIN 2)  note NITRILE SPECIFIER PROTEIN 2 (NSP2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: glucosinolate catabolic process, nitrile biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf apex, hypocotyl, flower, root, seed; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Mannose-binding lectin (InterPro:IPR001229), Kelch repeat type 2 (InterPro:IPR011498), Myrosinase-binding related, jacalin-like lectin (InterPro:IPR017388), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: NSP1 (NITRILE SPECIFIER PROTEIN 1) (TAIR:AT3G16400.2); Has 10014 Blast hits to 5388 proteins in 267 species: Archae - 8; Bacteria - 195; Metazoa - 6540; Fungi - 497; Plants - 1538; Viruses - 29; Other Eukaryotes - 1207 (source: NCBI BLink).  protein_id AT2G33070.1p  transcript_id AT2G33070.1  protein_id AT2G33070.1p  transcript_id AT2G33070.1  
At2g33070	chr2:014030740	0.0	C/14030740-14030934,14030391-14030663,14029350-14030297	AT2G33070.2  CDS  gene_syn ATNSP2, F25I18.19, F25I18_19, NITRILE SPECIFIER PROTEIN 2, NITRILE-SPECIFIER PROTEIN 2, NSP2  gene NSP2  function Encodes a nitrile-specifier protein NSP2. NSP2 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation.  go_component cellular_component|GO:0005575||ND  go_process glucosinolate catabolic process|GO:0019762|18987211|IDA  go_process nitrile biosynthetic process|GO:0080028|18987211|IDA  go_function molecular_function|GO:0003674||ND  product NSP2 (NITRILE SPECIFIER PROTEIN 2)  note NITRILE SPECIFIER PROTEIN 2 (NSP2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: glucosinolate catabolic process, nitrile biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf apex, hypocotyl, flower, root, seed; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Mannose-binding lectin (InterPro:IPR001229), Kelch repeat type 2 (InterPro:IPR011498), Myrosinase-binding related, jacalin-like lectin (InterPro:IPR017388), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: NSP1 (NITRILE SPECIFIER PROTEIN 1) (TAIR:AT3G16400.2); Has 10014 Blast hits to 5388 proteins in 267 species: Archae - 8; Bacteria - 195; Metazoa - 6540; Fungi - 497; Plants - 1538; Viruses - 29; Other Eukaryotes - 1207 (source: NCBI BLink).  protein_id AT2G33070.2p  transcript_id AT2G33070.2  protein_id AT2G33070.2p  transcript_id AT2G33070.2  
At2g33080	chr2:014032015	0.0	W/14032015-14034237	AT2G33080.1  CDS  gene_syn AtRLP28, F25I18.18, F25I18_18, Receptor Like Protein 28  gene AtRLP28  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product AtRLP28 (Receptor Like Protein 28); protein binding  note Receptor Like Protein 28 (AtRLP28); FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP24 (Receptor Like Protein 24); kinase/ protein binding (TAIR:AT2G33020.1); Has 64919 Blast hits to 19579 proteins in 808 species: Archae - 23; Bacteria - 4516; Metazoa - 18581; Fungi - 626; Plants - 36348; Viruses - 28; Other Eukaryotes - 4797 (source: NCBI BLink).  protein_id AT2G33080.1p  transcript_id AT2G33080.1  protein_id AT2G33080.1p  transcript_id AT2G33080.1  
At2g33090	chr2:014035215	0.0	C/14035215-14035961	AT2G33090.1  CDS  gene_syn F25I18.17, F25I18_17  go_component nucleus|GO:0005634||IEA  go_process transcription|GO:0006350||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: TFIIS N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33300.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G33090.1p  transcript_id AT2G33090.1  protein_id AT2G33090.1p  transcript_id AT2G33090.1  
At2g33100	chr2:014039497	0.0	C/14039497-14040044,14038962-14039391,14038493-14038873,14038044-14038419,14037528-14037951,14036494-14037445	AT2G33100.1  CDS  gene_syn ATCSLD1, CELLULOSE-SYNTHASE LIKE D1, CSLD1, F25I18.16, F25I18_16  gene ATCSLD1  function encodes a gene similar to cellulose synthase  go_component chloroplast|GO:0009507||IEA  go_component membrane|GO:0016020||IEA  go_process polysaccharide biosynthetic process|GO:0000271||ISS  go_process plant-type cell wall biogenesis|GO:0009832||ISS  go_process pollen germination|GO:0009846|18768911|IMP  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  product ATCSLD1; cellulose synthase/ transferase, transferring glycosyl groups  note ATCSLD1; FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: pollen germination, plant-type cell wall biogenesis, polysaccharide biosynthetic process; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: CSLD3 (CELLULOSE SYNTHASE-LIKE D3); cellulose synthase/ transferase, transferring glycosyl groups (TAIR:AT3G03050.1); Has 2331 Blast hits to 1873 proteins in 423 species: Archae - 2; Bacteria - 924; Metazoa - 3; Fungi - 19; Plants - 1319; Viruses - 7; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT2G33100.1p  transcript_id AT2G33100.1  protein_id AT2G33100.1p  transcript_id AT2G33100.1  
At2g33110	chr2:014042703	0.0	C/14042703-14042892,14042026-14042167,14041819-14041939,14041575-14041619,14041297-14041452	AT2G33110.1  CDS  gene_syn ATVAMP723, F25I18.15, F25I18_15, VAMP723, VESICLE-ASSOCIATED MEMBRANE PROTEIN 723  gene ATVAMP723  function member of VAMP72 Gene Family  go_process transport|GO:0006810||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_component endoplasmic reticulum|GO:0005783|15876431|TAS  go_component membrane|GO:0016020||ISS  go_function molecular_function|GO:0003674||ND  product ATVAMP723 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 723)  note VESICLE-ASSOCIATED MEMBRANE PROTEIN 723 (ATVAMP723); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: endoplasmic reticulum, membrane; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) (TAIR:AT2G33120.1); Has 1138 Blast hits to 1137 proteins in 172 species: Archae - 0; Bacteria - 0; Metazoa - 606; Fungi - 94; Plants - 276; Viruses - 0; Other Eukaryotes - 162 (source: NCBI BLink).  protein_id AT2G33110.1p  transcript_id AT2G33110.1  protein_id AT2G33110.1p  transcript_id AT2G33110.1  
At2g33120	chr2:014045124	0.0	C/14045124-14045337,14044530-14044671,14044316-14044436,14044061-14044123,14043785-14043934	AT2G33120.2  CDS  gene_syn ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, ATVAMP722, F25I18.14, F25I18_14, SAR1, SYNAPTOBREVIN-RELATED PROTEIN 1, VAMP722  gene SAR1  function Encodes a member of Synaptobrevin -like protein family.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process transport|GO:0006810||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_component endosome|GO:0005768|15876431|TAS  go_component plasma membrane|GO:0005886|15876431|TAS  go_component membrane|GO:0016020||ISS  go_function molecular_function|GO:0003674||ND  product SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)  note SYNAPTOBREVIN-RELATED PROTEIN 1 (SAR1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: endosome, plasma membrane, membrane; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) (TAIR:AT1G04750.1); Has 1727 Blast hits to 1727 proteins in 195 species: Archae - 0; Bacteria - 0; Metazoa - 803; Fungi - 279; Plants - 338; Viruses - 0; Other Eukaryotes - 307 (source: NCBI BLink).  protein_id AT2G33120.2p  transcript_id AT2G33120.2  protein_id AT2G33120.2p  transcript_id AT2G33120.2  
At2g33120	chr2:014045148	0.0	C/14045148-14045337,14044530-14044671,14044316-14044436,14044061-14044123,14043785-14043934	AT2G33120.1  CDS  gene_syn ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, ATVAMP722, F25I18.14, F25I18_14, SAR1, SYNAPTOBREVIN-RELATED PROTEIN 1, VAMP722  gene SAR1  function Encodes a member of Synaptobrevin -like protein family.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process transport|GO:0006810||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_component endosome|GO:0005768|15876431|TAS  go_component plasma membrane|GO:0005886|15876431|TAS  go_component membrane|GO:0016020||ISS  go_function molecular_function|GO:0003674||ND  product SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)  note SYNAPTOBREVIN-RELATED PROTEIN 1 (SAR1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: endosome, plasma membrane, membrane; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) (TAIR:AT1G04750.1); Has 1784 Blast hits to 1784 proteins in 195 species: Archae - 0; Bacteria - 0; Metazoa - 820; Fungi - 287; Plants - 365; Viruses - 0; Other Eukaryotes - 312 (source: NCBI BLink).  protein_id AT2G33120.1p  transcript_id AT2G33120.1  protein_id AT2G33120.1p  transcript_id AT2G33120.1  
At2g33130	chr2:014046521	0.0	C/14046521-14046832	AT2G33130.1  CDS  gene_syn F25I18.13, F25I18_13, RALFL18, ralf-like 18  gene RALFL18  function Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  go_component apoplast|GO:0048046|12611624|ISS  go_process cell-cell signaling|GO:0007267|12611624|ISS  go_function signal transducer activity|GO:0004871|12611624|TAS  product RALFL18 (ralf-like 18); signal transducer  note ralf-like 18 (RALFL18); FUNCTIONS IN: signal transducer activity; INVOLVED IN: cell-cell signaling; LOCATED IN: apoplast; EXPRESSED IN: sperm cell, embryo, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALFL14 (ralf-like 14); signal transducer (TAIR:AT2G20660.1); Has 18 Blast hits to 18 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G33130.1p  transcript_id AT2G33130.1  protein_id AT2G33130.1p  transcript_id AT2G33130.1  
At2g33140	chr2:014047389	0.0	C/14047389-14047426	AT2G33140.1  tRNA  gene_syn 6992.TRNA-MET-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Met (anticodon: CAT)  transcript_id AT2G33140.1  
At2g33150	chr2:014050894	0.0	C/14050894-14050983,14050405-14050481,14050212-14050296,14050003-14050129,14049815-14049913,14049674-14049741,14049486-14049593,14049319-14049396,14049069-14049201,14048878-14048974,14048587-14048710,14048386-14048494,14048015-14048098,14047814-14047923	AT2G33150.1  CDS  gene_syn 3-KETOACYL-COA THIOLASE 2, KAT2, PED1, PEROXISOMAL 3-KETOACYL-COA THIOLASE 3, PEROXISOME DEFECTIVE 1, PKT3, POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 2  gene PKT3  function Encodes an organellar (peroxisome, glyoxysome) 3-ketoacyl-CoA thiolase, involved in fatty acid b-oxidation during germination and subsequent seedling growth. Mutants have defects in glyoxysomal fatty acid beta-oxidation. EC2.3.1.16 thiolase.  go_component nucleolus|GO:0005730|15496452|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|14764908|IDA  go_process fatty acid beta-oxidation|GO:0006635|9490742|TAS  go_process response to wounding|GO:0009611|11891244|NAS  go_process jasmonic acid biosynthetic process|GO:0009695|11891244|NAS  go_process glyoxysome organization|GO:0010111|9490742|IMP  go_process fatty acid oxidation|GO:0019395||TAS  go_function acetyl-CoA C-acyltransferase activity|GO:0003988|11696182|IDA  go_function acetyl-CoA C-acyltransferase activity|GO:0003988|11696182|IMP  go_function acetyl-CoA C-acyltransferase activity|GO:0003988|9490742|ISS  product PKT3 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 3); acetyl-CoA C-acyltransferase  note PEROXISOMAL 3-KETOACYL-COA THIOLASE 3 (PKT3); FUNCTIONS IN: acetyl-CoA C-acyltransferase activity; INVOLVED IN: fatty acid beta-oxidation, jasmonic acid biosynthetic process, response to wounding, glyoxysome organization, fatty acid oxidation; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase (InterPro:IPR002155), Thiolase-like (InterPro:IPR016039), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: PKT4 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 4); acetyl-CoA C-acyltransferase/ catalytic (TAIR:AT1G04710.1); Has 15472 Blast hits to 15461 proteins in 1304 species: Archae - 231; Bacteria - 7954; Metazoa - 818; Fungi - 418; Plants - 174; Viruses - 0; Other Eukaryotes - 5877 (source: NCBI BLink).  protein_id AT2G33150.1p  transcript_id AT2G33150.1  protein_id AT2G33150.1p  transcript_id AT2G33150.1  
At2g33160	chr2:014053404	0.0	W/14053404-14054128,14054487-14054970,14055461-14056246	AT2G33160.1  CDS  gene_syn F25I18.10, F25I18_10  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity, nucleic acid binding; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT1G78400.1); Has 2411 Blast hits to 2402 proteins in 285 species: Archae - 3; Bacteria - 325; Metazoa - 8; Fungi - 970; Plants - 1046; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT2G33160.1p  transcript_id AT2G33160.1  protein_id AT2G33160.1p  transcript_id AT2G33160.1  
At2g33170	chr2:014056838	0.0	C/14056838-14059829,14056371-14056753	AT2G33170.1  CDS  gene_syn F25I18.9, F25I18_9  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT5G63930.1); Has 172262 Blast hits to 100239 proteins in 3484 species: Archae - 106; Bacteria - 13214; Metazoa - 66354; Fungi - 7609; Plants - 61561; Viruses - 432; Other Eukaryotes - 22986 (source: NCBI BLink).  protein_id AT2G33170.1p  transcript_id AT2G33170.1  protein_id AT2G33170.1p  transcript_id AT2G33170.1  
At2g33175	chr2:014062754	0.0	C/14062754-14063275	AT2G33175.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system.  protein_id AT2G33175.1p  transcript_id AT2G33175.1  protein_id AT2G33175.1p  transcript_id AT2G33175.1  
At2g33180	chr2:014066479	0.0	W/14066479-14066757,14067093-14067314	AT2G33180.1  CDS  gene_syn F25I18.8, F25I18_8  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30 Blast hits to 30 proteins in 13 species: Archae - 0; Bacteria - 7; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G33180.1p  transcript_id AT2G33180.1  protein_id AT2G33180.1p  transcript_id AT2G33180.1  
At2g33190	chr2:014067972	0.0	W/14067972-14069111	AT2G33190.1  CDS  gene_syn F25I18.7, F25I18_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G33200.1); Has 257 Blast hits to 244 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 257; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G33190.1p  transcript_id AT2G33190.1  protein_id AT2G33190.1p  transcript_id AT2G33190.1  
At2g33200	chr2:014069541	0.0	W/14069541-14070671	AT2G33200.1  CDS  gene_syn F25I18.6, F25I18_6  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G33190.1); Has 251 Blast hits to 240 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 251; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G33200.1p  transcript_id AT2G33200.1  protein_id AT2G33200.1p  transcript_id AT2G33200.1  
At2g33205	chr2:014072974	0.0	C/14072974-14073211,14072820-14072896,14072574-14072733,14072464-14072488,14072287-14072376,14072032-14072203,14071878-14071954,14071735-14071801,14071593-14071664,14071381-14071514,14071217-14071290,14070987-14071069	AT2G33205.1  CDS  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: TMS membrane protein/tumour differentially expressed protein (InterPro:IPR005016); BEST Arabidopsis thaliana protein match is: MEE55 (maternal effect embryo arrest 55) (TAIR:AT4G13345.1); Has 602 Blast hits to 593 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 380; Fungi - 90; Plants - 84; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT2G33205.1p  transcript_id AT2G33205.1  protein_id AT2G33205.1p  transcript_id AT2G33205.1  
At2g33210	chr2:014078531	0.0	C/14078531-14078568,14078255-14078279,14078043-14078174,14077721-14077880,14077324-14077595,14077139-14077243,14076974-14077060,14076783-14076872,14076605-14076685,14076440-14076508,14076283-14076360,14076076-14076171,14075883-14075982,14075686-14075789,14075498-14075603,14075305-14075383,14075093-14075228	AT2G33210.1  CDS  gene_syn F25I18.5, F25I18_5, HEAT SHOCK PROTEIN 60-2, HSP60-2  gene HSP60-2  go_component mitochondrion|GO:0005739|15276431|IDA  go_component mitochondrion|GO:0005739|17137349|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739||ISS  go_process inflammatory response|GO:0006954||ISS  go_process response to salt stress|GO:0009651|11351099|IEP  product HSP60-2 (HEAT SHOCK PROTEIN 60-2); ATP binding  note HEAT SHOCK PROTEIN 60-2 (HSP60-2); FUNCTIONS IN: ATP binding; INVOLVED IN: response to salt stress, inflammatory response; LOCATED IN: mitochondrion, plasma membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: HSP60 (HEAT SHOCK PROTEIN 60); ATP binding (TAIR:AT3G23990.1); Has 24398 Blast hits to 24366 proteins in 5111 species: Archae - 379; Bacteria - 14011; Metazoa - 1464; Fungi - 922; Plants - 452; Viruses - 2; Other Eukaryotes - 7168 (source: NCBI BLink).  protein_id AT2G33210.1p  transcript_id AT2G33210.1  protein_id AT2G33210.1p  transcript_id AT2G33210.1  
At2g33220	chr2:014078974	0.0	W/14078974-14079188,14079632-14079703,14079785-14079929	AT2G33220.1  CDS  gene_syn F25I18.4, F25I18_4  go_component mitochondrion|GO:0005739|12837548|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_component mitochondrial membrane|GO:0031966|16407270|IDA  go_component respiratory chain complex I|GO:0045271|16407270|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process photorespiration|GO:0009853|16407270|TAS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, plastid, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GRIM-19 (InterPro:IPR009346); BEST Arabidopsis thaliana protein match is: MEE4 (maternal effect embryo arrest 4) (TAIR:AT1G04630.1); Has 226 Blast hits to 226 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 53; Plants - 38; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT2G33220.1p  transcript_id AT2G33220.1  protein_id AT2G33220.1p  transcript_id AT2G33220.1  
At2g33230	chr2:014081273	0.0	C/14081273-14081971,14080776-14081147,14080411-14080635	AT2G33230.1  CDS  gene_syn F25I18.3, F25I18_3  go_function flavin-containing monooxygenase activity|GO:0004499||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_function monooxygenase activity|GO:0004497||ISS  product flavin-containing monooxygenase, putative / FMO, putative  note flavin-containing monooxygenase, putative / FMO, putative; FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960), Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027); BEST Arabidopsis thaliana protein match is: flavin-containing monooxygenase / FMO (YUCCA3) (TAIR:AT1G04610.1); Has 6341 Blast hits to 6328 proteins in 672 species: Archae - 6; Bacteria - 2685; Metazoa - 666; Fungi - 928; Plants - 366; Viruses - 0; Other Eukaryotes - 1690 (source: NCBI BLink).  protein_id AT2G33230.1p  transcript_id AT2G33230.1  protein_id AT2G33230.1p  transcript_id AT2G33230.1  
At2g33233	chr2:014083494	0.0	C/14083494-14083578,14083144-14083301	AT2G33233.1  CDS  gene_syn LCR49, Low-molecular-weight cysteine-rich 49  gene LCR49  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR49 (Low-molecular-weight cysteine-rich 49)  note Low-molecular-weight cysteine-rich 49 (LCR49); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: LCR48 (Low-molecular-weight cysteine-rich 48) (TAIR:AT3G48231.1); Has 25 Blast hits to 25 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G33233.1p  transcript_id AT2G33233.1  protein_id AT2G33233.1p  transcript_id AT2G33233.1  
At2g33240	chr2:014096858	0.0	C/14096858-14096914,14096445-14096567,14096206-14096349,14095887-14096032,14095641-14095797,14095473-14095531,14095223-14095382,14094956-14095105,14094751-14094887,14094520-14094666,14094328-14094429,14093961-14094018,14093766-14093867,14093615-14093652,14093402-14093528,14093126-14093296,14092916-14093047,14092704-14092813,14092533-14092593,14092203-14092380,14091905-14092110,14091671-14091790,14091292-14091390,14090993-14091205,14090768-14090920,14090498-14090647,14090242-14090409,14089959-14090161,14089747-14089840,14089610-14089669,14089436-14089513,14089179-14089349,14088903-14089055,14088605-14088781,14088167-14088520,14088008-14088078,14087814-14087910,14087670-14087726,14087515-14087571,14087309-14087389,14087148-14087224,14086942-14087056	AT2G33240.1  CDS  gene_syn ATXID, F25I18.2, F25I18_2, MYOSIN XI D, XID  gene XID  function member of Myosin-like proteins  go_component endomembrane system|GO:0012505||IEA  go_component myosin complex|GO:0016459||IEA  go_component myosin complex|GO:0016459||ISS  go_process actin filament-based movement|GO:0030048|11516337|TAS  go_function motor activity|GO:0003774|11516337|ISS  go_function motor activity|GO:0003774||ISS  go_function protein binding|GO:0005515||ISS  product XID; motor/ protein binding  note XID; FUNCTIONS IN: protein binding, motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: endomembrane system, myosin complex; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor region (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: XIA (MYOSIN XI A); motor/ protein binding (TAIR:AT1G04600.1); Has 80641 Blast hits to 43899 proteins in 1868 species: Archae - 846; Bacteria - 7816; Metazoa - 40361; Fungi - 5856; Plants - 3002; Viruses - 318; Other Eukaryotes - 22442 (source: NCBI BLink).  protein_id AT2G33240.1p  transcript_id AT2G33240.1  protein_id AT2G33240.1p  transcript_id AT2G33240.1  
At2g33250	chr2:014097454	0.0	W/14097454-14097858,14098184-14098678	AT2G33250.1  CDS  gene_syn F25I18.1, F25I18_1  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 19 Blast hits to 19 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G33250.1p  transcript_id AT2G33250.1  protein_id AT2G33250.1p  transcript_id AT2G33250.1  
At2g33255	chr2:014098795	0.0	W/14098795-14099128,14099520-14099562,14099654-14099714,14099840-14099974,14100194-14100358	AT2G33255.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function phosphoglycolate phosphatase activity|GO:0008967||IEA  go_function hydrolase activity|GO:0016787||ISS  product catalytic/ hydrolase/ phosphoglycolate phosphatase  note catalytic/ hydrolase/ phosphoglycolate phosphatase; FUNCTIONS IN: hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), HAD-superfamily hydrolase, subfamily IA, variant 1 (InterPro:IPR006439); Has 1951 Blast hits to 1951 proteins in 686 species: Archae - 48; Bacteria - 1524; Metazoa - 21; Fungi - 48; Plants - 33; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink).  protein_id AT2G33255.1p  transcript_id AT2G33255.1  protein_id AT2G33255.1p  transcript_id AT2G33255.1  
At2g33260	chr2:014101021	0.0	C/14101021-14102252,14100840-14100918	AT2G33260.1  CDS  gene_syn F4P9.3, F4P9_3  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_function L-tyrosine transmembrane transporter activity|GO:0005302||ISS  product tryptophan/tyrosine permease family protein  note tryptophan/tyrosine permease family protein; FUNCTIONS IN: L-tyrosine transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Tryptophan/tyrosine permease (InterPro:IPR018227); BEST Arabidopsis thaliana protein match is: tryptophan/tyrosine permease family protein (TAIR:AT5G19500.1); Has 1612 Blast hits to 1606 proteins in 367 species: Archae - 11; Bacteria - 1456; Metazoa - 2; Fungi - 2; Plants - 51; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT2G33260.1p  transcript_id AT2G33260.1  protein_id AT2G33260.1p  transcript_id AT2G33260.1  
At2g33270	chr2:014103681	0.0	W/14103681-14103905,14103980-14104156,14104374-14104538,14104950-14105204	AT2G33270.1  CDS  gene_syn ACHT3, ATYPICAL CYS HIS RICH THIOREDOXIN 3, F4P9.4, F4P9_4  gene ACHT3  function Encodes a member of the thioredoxin family protein. Located in the chloroplast.  go_process cell redox homeostasis|GO:0045454||IEA  go_component chloroplast|GO:0009507|19109414|IDA  product ACHT3 (ATYPICAL CYS HIS RICH THIOREDOXIN 3)  note ATYPICAL CYS HIS RICH THIOREDOXIN 3 (ACHT3); INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336), Thioredoxin, conserved site (InterPro:IPR017937); BEST Arabidopsis thaliana protein match is: ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4); oxidoreductase, acting on sulfur group of donors, disulfide as acceptor (TAIR:AT1G08570.2); Has 2218 Blast hits to 2136 proteins in 378 species: Archae - 10; Bacteria - 241; Metazoa - 810; Fungi - 290; Plants - 426; Viruses - 3; Other Eukaryotes - 438 (source: NCBI BLink).  protein_id AT2G33270.1p  transcript_id AT2G33270.1  protein_id AT2G33270.1p  transcript_id AT2G33270.1  
At2g33280	chr2:014106410	0.0	W/14106410-14106494,14106579-14107720	AT2G33280.1  CDS  gene_syn F4P9.5, F4P9_5  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product integral membrane transporter family protein  note integral membrane transporter family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily, general substrate transporter (InterPro:IPR016196), Biopterin transport-related protein BT1 (InterPro:IPR004324); BEST Arabidopsis thaliana protein match is: integral membrane transporter family protein (TAIR:AT1G04570.1); Has 372 Blast hits to 365 proteins in 86 species: Archae - 4; Bacteria - 66; Metazoa - 0; Fungi - 4; Plants - 130; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).  protein_id AT2G33280.1p  transcript_id AT2G33280.1  protein_id AT2G33280.1p  transcript_id AT2G33280.1  
At2g33290	chr2:014110078	0.0	W/14110078-14112033	AT2G33290.1  CDS  gene_syn ATSUVH2, F4P9.6, F4P9_6, SDG3, SET DOMAIN-CONTAINING PROTEIN 3, SU(VAR)3-9 HOMOLOG 2, SUVH2  gene SUVH2  function Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. Gene is expressed in rosettes, stems, floral buds, and flowers by RT-PCR.  go_component nucleus|GO:0005634||IDA  go_component nuclear heterochromatin|GO:0005720|15775980|IDA  go_process histone methylation|GO:0016571|15775980|IDA  go_process regulation of gene expression, epigenetic|GO:0040029|15775980|IMP  go_process regulation of gene expression, epigenetic|GO:0040029||TAS  go_function histone methyltransferase activity|GO:0042054||ISS  product SUVH2 (SU(VAR)3-9 HOMOLOG 2); histone methyltransferase  note SU(VAR)3-9 HOMOLOG 2 (SUVH2); FUNCTIONS IN: histone methyltransferase activity; INVOLVED IN: regulation of gene expression, epigenetic, histone methylation; LOCATED IN: nuclear heterochromatin, nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), SRA-YDG (InterPro:IPR003105), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Pre-SET zinc-binding region (InterPro:IPR007728); BEST Arabidopsis thaliana protein match is: SUVH9; histone-lysine N-methyltransferase/ zinc ion binding (TAIR:AT4G13460.2); Has 1848 Blast hits to 1791 proteins in 146 species: Archae - 0; Bacteria - 8; Metazoa - 1271; Fungi - 125; Plants - 347; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).  protein_id AT2G33290.1p  transcript_id AT2G33290.1  protein_id AT2G33290.1p  transcript_id AT2G33290.1  
At2g33300	chr2:014113130	0.0	W/14113130-14113960	AT2G33300.1  CDS  gene_syn F4P9.7, F4P9_7  go_component nucleus|GO:0005634||IEA  go_process transcription|GO:0006350||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: TFIIS N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33090.1); Has 44 Blast hits to 44 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G33300.1p  transcript_id AT2G33300.1  protein_id AT2G33300.1p  transcript_id AT2G33300.1  
At2g33310	chr2:014115537	0.0	C/14115537-14115757,14114856-14115263,14114710-14114771,14114569-14114618	AT2G33310.1  CDS  gene_syn F4P9.8, F4P9_8, IAA13  gene IAA13  function Auxin induced gene, IAA13 (IAA13).  go_component nucleus|GO:0005634||IEA  go_process response to auxin stimulus|GO:0009733|12036262|TAS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  product IAA13; transcription factor  note IAA13; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to cyclopentenone, response to auxin stimulus; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA12 (AUXIN-INDUCED PROTEIN 12); transcription factor/ transcription repressor (TAIR:AT1G04550.2); Has 1216 Blast hits to 1216 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1215; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G33310.1p  transcript_id AT2G33310.1  protein_id AT2G33310.1p  transcript_id AT2G33310.1  
At2g33310	chr2:014115537	0.0	C/14115537-14115757,14114856-14115263,14114710-14114771,14114569-14114618	AT2G33310.3  CDS  gene_syn F4P9.8, F4P9_8, IAA13  gene IAA13  function Auxin induced gene, IAA13 (IAA13).  go_component nucleus|GO:0005634||IEA  go_process response to auxin stimulus|GO:0009733|12036262|TAS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  product IAA13; transcription factor  note IAA13; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to cyclopentenone, response to auxin stimulus; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA12 (AUXIN-INDUCED PROTEIN 12); transcription factor/ transcription repressor (TAIR:AT1G04550.2); Has 1216 Blast hits to 1216 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1215; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G33310.3p  transcript_id AT2G33310.3  protein_id AT2G33310.3p  transcript_id AT2G33310.3  
At2g33310	chr2:014115537	0.0	C/14115537-14115757,14114856-14115266,14114710-14114771,14114569-14114618	AT2G33310.2  CDS  gene_syn F4P9.8, F4P9_8, IAA13  gene IAA13  function Auxin induced gene, IAA13 (IAA13).  go_component nucleus|GO:0005634||IEA  go_process response to auxin stimulus|GO:0009733|12036262|TAS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  product IAA13; transcription factor  note IAA13; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to cyclopentenone, response to auxin stimulus; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA12 (AUXIN-INDUCED PROTEIN 12); transcription factor/ transcription repressor (TAIR:AT1G04550.2); Has 1216 Blast hits to 1216 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1215; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G33310.2p  transcript_id AT2G33310.2  protein_id AT2G33310.2p  transcript_id AT2G33310.2  
At2g33320	chr2:014119526	0.0	C/14119526-14121334	AT2G33320.1  CDS  gene_syn F4P9.9, F4P9_9  product C2 domain-containing protein  note C2 domain-containing protein; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT1G04540.1); Has 908 Blast hits to 487 proteins in 90 species: Archae - 2; Bacteria - 16; Metazoa - 217; Fungi - 68; Plants - 209; Viruses - 2; Other Eukaryotes - 394 (source: NCBI BLink).  protein_id AT2G33320.1p  transcript_id AT2G33320.1  protein_id AT2G33320.1p  transcript_id AT2G33320.1  
At2g33330	chr2:014124602	0.0	C/14124602-14125028,14123980-14124351,14123482-14123589,14123181-14123188	AT2G33330.1  CDS  gene_syn F4P9.10, F4P9_10, PDLP3, PLASMODESMATA-LOCATED PROTEIN 3  gene PDLP3  function Encodes a plasmodesmal protein that affects the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.  go_component plasmodesma|GO:0009506|18215111|IDA  go_process plasmodesmata-mediated intercellular transport|GO:0010497|18215111|IGI  go_function molecular_function|GO:0003674||ND  product PDLP3 (PLASMODESMATA-LOCATED PROTEIN 3)  note PLASMODESMATA-LOCATED PROTEIN 3 (PDLP3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: plasmodesmata-mediated intercellular transport; LOCATED IN: plasmodesma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: PDLP2 (PLASMODESMATA-LOCATED PROTEIN 2) (TAIR:AT1G04520.1); Has 597 Blast hits to 571 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 591; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G33330.1p  transcript_id AT2G33330.1  protein_id AT2G33330.1p  transcript_id AT2G33330.1  
At2g33340	chr2:014130988	0.0	C/14130988-14131000,14130807-14130892,14130488-14130559,14130339-14130401,14129914-14130000,14129623-14129764,14129412-14129533,14129047-14129163,14128604-14128699,14128463-14128522,14128043-14128117,14127844-14127948,14127497-14127613,14127322-14127399,14127148-14127232,14126995-14127046,14126792-14126867,14126703-14126714	AT2G33340.3  CDS  gene_syn F4P9.11, F4P9_11  go_component cell wall|GO:0005618|16287169|IDA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function nucleotide binding|GO:0000166||ISS  product nucleotide binding / ubiquitin-protein ligase  note nucleotide binding / ubiquitin-protein ligase; FUNCTIONS IN: ubiquitin-protein ligase activity, nucleotide binding; INVOLVED IN: protein ubiquitination; LOCATED IN: cell wall, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), WD40 repeat (InterPro:IPR001680), Pre-mRNA-splicing factor 19 (InterPro:IPR013915), WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT1G04510.2); Has 45725 Blast hits to 21374 proteins in 636 species: Archae - 46; Bacteria - 5939; Metazoa - 20483; Fungi - 8848; Plants - 3825; Viruses - 0; Other Eukaryotes - 6584 (source: NCBI BLink).  protein_id AT2G33340.3p  transcript_id AT2G33340.3  protein_id AT2G33340.3p  transcript_id AT2G33340.3  
At2g33340	chr2:014130988	0.0	C/14130988-14131000,14130807-14130892,14130488-14130559,14130339-14130401,14129914-14130000,14129623-14129764,14129412-14129533,14129047-14129163,14128604-14128699,14128463-14128522,14128043-14128117,14127844-14127948,14127497-14127613,14127322-14127399,14127148-14127232,14126995-14127046,14126797-14126867,14126584-14126720	AT2G33340.1  CDS  gene_syn F4P9.11, F4P9_11  go_component cell wall|GO:0005618|16287169|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function nucleotide binding|GO:0000166||ISS  product nucleotide binding / ubiquitin-protein ligase  note nucleotide binding / ubiquitin-protein ligase; FUNCTIONS IN: ubiquitin-protein ligase activity, nucleotide binding; INVOLVED IN: protein ubiquitination; LOCATED IN: cell wall, chloroplast, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), U box (InterPro:IPR003613), WD40 repeat, region (InterPro:IPR017986), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), Pre-mRNA-splicing factor 19 (InterPro:IPR013915); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT1G04510.1); Has 46274 Blast hits to 21594 proteins in 639 species: Archae - 48; Bacteria - 5806; Metazoa - 20988; Fungi - 8881; Plants - 3936; Viruses - 0; Other Eukaryotes - 6615 (source: NCBI BLink).  protein_id AT2G33340.1p  transcript_id AT2G33340.1  protein_id AT2G33340.1p  transcript_id AT2G33340.1  
At2g33340	chr2:014130988	0.0	C/14130988-14131000,14130807-14130892,14130488-14130559,14130339-14130401,14129914-14130000,14129623-14129764,14129412-14129533,14129047-14129163,14128604-14128699,14128463-14128522,14128043-14128117,14127844-14127948,14127497-14127613,14127322-14127399,14127148-14127232,14126995-14127046,14126797-14126867,14126584-14126720	AT2G33340.2  CDS  gene_syn F4P9.11, F4P9_11  go_component cell wall|GO:0005618|16287169|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function nucleotide binding|GO:0000166||ISS  product nucleotide binding / ubiquitin-protein ligase  note nucleotide binding / ubiquitin-protein ligase; FUNCTIONS IN: ubiquitin-protein ligase activity, nucleotide binding; INVOLVED IN: protein ubiquitination; LOCATED IN: cell wall, chloroplast, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), WD40 repeat (InterPro:IPR001680), Pre-mRNA-splicing factor 19 (InterPro:IPR013915), WD40 repeat-like (InterPro:IPR011046), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT1G04510.1); Has 46145 Blast hits to 21577 proteins in 639 species: Archae - 48; Bacteria - 5780; Metazoa - 20901; Fungi - 8888; Plants - 3909; Viruses - 0; Other Eukaryotes - 6619 (source: NCBI BLink).  protein_id AT2G33340.2p  transcript_id AT2G33340.2  protein_id AT2G33340.2p  transcript_id AT2G33340.2  
At2g33350	chr2:014134116	0.0	W/14134116-14134163,14135365-14136111,14136248-14136448,14136525-14136653,14136729-14136836	AT2G33350.1  CDS  gene_syn F4P9.12, F4P9_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: zinc finger CONSTANS-related (TAIR:AT1G04500.1); Has 7691 Blast hits to 4729 proteins in 129 species: Archae - 8; Bacteria - 25; Metazoa - 148; Fungi - 114; Plants - 918; Viruses - 0; Other Eukaryotes - 6478 (source: NCBI BLink).  protein_id AT2G33350.1p  transcript_id AT2G33350.1  protein_id AT2G33350.1p  transcript_id AT2G33350.1  
At2g33350	chr2:014134116	0.0	W/14134116-14134163,14135365-14136111,14136251-14136448,14136525-14136653,14136729-14136836	AT2G33350.2  CDS  gene_syn F4P9.12, F4P9_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: zinc finger CONSTANS-related (TAIR:AT1G04500.1); Has 7688 Blast hits to 4734 proteins in 129 species: Archae - 8; Bacteria - 25; Metazoa - 148; Fungi - 118; Plants - 919; Viruses - 0; Other Eukaryotes - 6470 (source: NCBI BLink).  protein_id AT2G33350.2p  transcript_id AT2G33350.2  protein_id AT2G33350.2p  transcript_id AT2G33350.2  
At2g33360	chr2:014140901	0.0	W/14140901-14141195,14141661-14142535,14142694-14142870	AT2G33360.2  CDS  gene_syn F4P9.13, F4P9_13  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G04490.2); Has 67 Blast hits to 63 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G33360.2p  transcript_id AT2G33360.2  protein_id AT2G33360.2p  transcript_id AT2G33360.2  
At2g33360	chr2:014140901	0.0	W/14140901-14142535,14142694-14142870	AT2G33360.1  CDS  gene_syn F4P9.13, F4P9_13  go_component vacuole|GO:0005773|14760709|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G04490.2); Has 78 Blast hits to 77 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 2; Plants - 64; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G33360.1p  transcript_id AT2G33360.1  protein_id AT2G33360.1p  transcript_id AT2G33360.1  
At2g33370	chr2:014144632	0.0	C/14144632-14144644,14144018-14144302,14143895-14143936,14143718-14143800	AT2G33370.1  CDS  gene_syn F4P9.14  go_component nucleolus|GO:0005730|15496452|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L23 (RPL23B)  note 60S ribosomal protein L23 (RPL23B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, ribosome, nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L14b/L23e (InterPro:IPR000218); BEST Arabidopsis thaliana protein match is: emb2171 (embryo defective 2171); structural constituent of ribosome (TAIR:AT3G04400.1); Has 6297 Blast hits to 6297 proteins in 1833 species: Archae - 236; Bacteria - 2977; Metazoa - 280; Fungi - 176; Plants - 586; Viruses - 0; Other Eukaryotes - 2042 (source: NCBI BLink).  protein_id AT2G33370.1p  transcript_id AT2G33370.1  protein_id AT2G33370.1p  transcript_id AT2G33370.1  
At2g33380	chr2:014146272	0.0	C/14146272-14146374,14145848-14145997,14145679-14145764,14145488-14145582,14144984-14145134	AT2G33380.2  CDS  gene_syn F4P9.15, F4P9_15, RD20, RESPONSIVE TO DESSICATION 20  gene RD20  function Encodes a calcium binding protein whose mRNA is induced upon treatment with NaCl, ABA and in response to dessication. mRNA expression under drought conditions is apparent particularly in leaves and flowers.  go_component vacuole|GO:0005773|15539469|IDA  go_process response to desiccation|GO:0009269|10965948|IEP  go_process response to desiccation|GO:0009269|10965948|TAS  go_process response to cold|GO:0009409|10965948|IEP  go_process response to salt stress|GO:0009651|10965948|IEP  go_process response to abscisic acid stimulus|GO:0009737|10965948|IEP  go_process response to abscisic acid stimulus|GO:0009737|16258012|IEP  go_function calcium ion binding|GO:0005509|10965948|IDA  go_function calcium ion binding|GO:0005509|10965948|TAS  product RD20 (RESPONSIVE TO DESSICATION 20); calcium ion binding  note RESPONSIVE TO DESSICATION 20 (RD20); FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to salt stress, response to desiccation, response to cold, response to abscisic acid stimulus; LOCATED IN: vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: calcium ion binding (TAIR:AT5G29560.1); Has 224 Blast hits to 220 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 46; Plants - 176; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G33380.2p  transcript_id AT2G33380.2  protein_id AT2G33380.2p  transcript_id AT2G33380.2  
At2g33380	chr2:014146272	0.0	C/14146272-14146374,14145848-14145997,14145679-14145764,14145488-14145582,14145270-14145395,14144984-14145134	AT2G33380.1  CDS  gene_syn F4P9.15, F4P9_15, RD20, RESPONSIVE TO DESSICATION 20  gene RD20  function Encodes a calcium binding protein whose mRNA is induced upon treatment with NaCl, ABA and in response to dessication. mRNA expression under drought conditions is apparent particularly in leaves and flowers.  go_component vacuole|GO:0005773|15539469|IDA  go_process response to desiccation|GO:0009269|10965948|IEP  go_process response to desiccation|GO:0009269|10965948|TAS  go_process response to cold|GO:0009409|10965948|IEP  go_process response to salt stress|GO:0009651|10965948|IEP  go_process response to abscisic acid stimulus|GO:0009737|10965948|IEP  go_process response to abscisic acid stimulus|GO:0009737|16258012|IEP  go_function calcium ion binding|GO:0005509|10965948|IDA  go_function calcium ion binding|GO:0005509|10965948|TAS  product RD20 (RESPONSIVE TO DESSICATION 20); calcium ion binding  note RESPONSIVE TO DESSICATION 20 (RD20); FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to salt stress, response to desiccation, response to cold, response to abscisic acid stimulus; LOCATED IN: vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: ATS1 (ARABIDOPSIS THALIANA SEED GENE 1); calcium ion binding (TAIR:AT4G26740.1); Has 230 Blast hits to 225 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 46; Plants - 179; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT2G33380.1p  transcript_id AT2G33380.1  protein_id AT2G33380.1p  transcript_id AT2G33380.1  
At2g33385	chr2:014149711	0.0	C/14149711-14149769,14149419-14149485,14149113-14149320,14148862-14149031,14148654-14148731,14148396-14148501,14148209-14148300,14148065-14148121,14147921-14147963,14147604-14147821	AT2G33385.1  CDS  gene_syn actin-related protein C2B, arpc2b  gene arpc2b  go_component Arp2/3 protein complex|GO:0005885|15653407|TAS  go_process actin filament organization|GO:0007015|10572033|TAS  go_function structural molecule activity|GO:0005198||ISS  product arpc2b (actin-related protein C2B); structural molecule  note actin-related protein C2B (arpc2b); FUNCTIONS IN: structural molecule activity; INVOLVED IN: actin filament organization; LOCATED IN: Arp2/3 protein complex; CONTAINS InterPro DOMAIN/s: Arp2/3 complex, 34kDa subunit p34-Arc (InterPro:IPR007188); BEST Arabidopsis thaliana protein match is: DIS2 (DISTORTED TRICHOMES 2); structural molecule (TAIR:AT1G30825.1); Has 268 Blast hits to 268 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 87; Plants - 30; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT2G33385.1p  transcript_id AT2G33385.1  protein_id AT2G33385.1p  transcript_id AT2G33385.1  
At2g33390	chr2:014151714	0.0	W/14151714-14151952,14152641-14152698	AT2G33390.1  CDS  gene_syn F4P9.16, F4P9_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 16 Blast hits to 16 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G33390.1p  transcript_id AT2G33390.1  protein_id AT2G33390.1p  transcript_id AT2G33390.1  
At2g33400	chr2:014154318	0.0	C/14154318-14154401,14154106-14154200,14153331-14153970	AT2G33400.1  CDS  gene_syn F4P9.17, F4P9_17  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 3831 Blast hits to 2819 proteins in 269 species: Archae - 6; Bacteria - 251; Metazoa - 1097; Fungi - 557; Plants - 228; Viruses - 106; Other Eukaryotes - 1586 (source: NCBI BLink).  protein_id AT2G33400.1p  transcript_id AT2G33400.1  protein_id AT2G33400.1p  transcript_id AT2G33400.1  
At2g33410	chr2:014156085	0.0	W/14156085-14156306,14156443-14157435	AT2G33410.1  CDS  gene_syn F4P9.18, F4P9_18  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative  note heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative (TAIR:AT4G14300.1); Has 94535 Blast hits to 39593 proteins in 1647 species: Archae - 61; Bacteria - 20731; Metazoa - 42189; Fungi - 6847; Plants - 9462; Viruses - 649; Other Eukaryotes - 14596 (source: NCBI BLink).  protein_id AT2G33410.1p  transcript_id AT2G33410.1  protein_id AT2G33410.1p  transcript_id AT2G33410.1  
At2g33420	chr2:014158782	0.0	W/14158782-14159399,14159499-14160169,14160256-14160469,14160543-14160998,14161074-14161260,14161331-14162304	AT2G33420.1  CDS  gene_syn F4P9.19, F4P9_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Munc13 homology 1 (InterPro:IPR014770), Protein of unknown function DUF810 (InterPro:IPR008528), Munc13 homology 2 (InterPro:IPR014772); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G04470.1); Has 112 Blast hits to 104 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G33420.1p  transcript_id AT2G33420.1  protein_id AT2G33420.1p  transcript_id AT2G33420.1  
At2g33430	chr2:014162732	0.0	W/14162732-14163084,14163228-14163325,14163418-14163483,14164587-14164729	AT2G33430.1  CDS  gene_syn DAL, DAL1, DIFFERENTIATION AND GREENING-LIKE, DIFFERENTIATION AND GREENING-LIKE 1, F4P9.20, F4P9_20  gene DAL1  go_component chloroplast|GO:0009507|12678554|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)|GO:0002103|12678554|IMP  go_process plastid organization|GO:0009657|12678554|IMP  go_function molecular_function|GO:0003674||ND  product DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)  note DIFFERENTIATION AND GREENING-LIKE 1 (DAL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: plastid organization, endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA); LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: plastid developmental protein DAG, putative (TAIR:AT2G35240.1); Has 147 Blast hits to 134 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G33430.1p  transcript_id AT2G33430.1  protein_id AT2G33430.1p  transcript_id AT2G33430.1  
At2g33435	chr2:014166037	0.0	W/14166037-14168796,14168888-14169025,14169156-14169164,14169460-14169492	AT2G33435.1  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28770.1); Has 54405 Blast hits to 29546 proteins in 1082 species: Archae - 119; Bacteria - 2844; Metazoa - 27938; Fungi - 4694; Plants - 2080; Viruses - 203; Other Eukaryotes - 16527 (source: NCBI BLink).  protein_id AT2G33435.1p  transcript_id AT2G33435.1  protein_id AT2G33435.1p  transcript_id AT2G33435.1  
At2g33440	chr2:014170790	0.0	W/14170790-14170912,14171580-14171621,14171735-14171824,14172046-14172156,14172276-14172365,14172459-14172538,14173019-14173226	AT2G33440.1  CDS  gene_syn F4P9.21, F4P9_21  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_function RNA binding|GO:0003723||ISS  product splicing factor family protein  note splicing factor family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: U2 snRNP auxiliary factor large subunit, putative (TAIR:AT1G60900.1); Has 610 Blast hits to 599 proteins in 129 species: Archae - 0; Bacteria - 0; Metazoa - 341; Fungi - 78; Plants - 136; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT2G33440.1p  transcript_id AT2G33440.1  protein_id AT2G33440.1p  transcript_id AT2G33440.1  
At2g33450	chr2:014173620	0.0	W/14173620-14173818,14174148-14174380	AT2G33450.1  CDS  gene_syn F4P9.22, F4P9_22  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 50S ribosomal protein L28, chloroplast (CL28)  note 50S ribosomal protein L28, chloroplast (CL28); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L28 (InterPro:IPR001383); Has 2561 Blast hits to 2561 proteins in 799 species: Archae - 0; Bacteria - 1602; Metazoa - 0; Fungi - 4; Plants - 31; Viruses - 0; Other Eukaryotes - 924 (source: NCBI BLink).  protein_id AT2G33450.1p  transcript_id AT2G33450.1  protein_id AT2G33450.1p  transcript_id AT2G33450.1  
At2g33460	chr2:014175504	0.0	C/14175504-14175561,14175297-14175397,14175129-14175207,14174590-14175026	AT2G33460.1  CDS  gene_syn F4P9.23, F4P9_23, RIC1, ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 1  gene RIC1  function encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC3(family subgroup III). RIC1 is localized to the apical region of the plasma membrane in pollen tube and mutation analyses indicate that this localization is dependent on ROP1 binding. Gene is expressed in all tissues examined.Analysis of overexpression and loss of function mutants indicates a role in cortical microtubule organization during pavement cell morphogenesis.  go_component cortical microtubule, transverse to long axis|GO:0010005|15766531|IDA  go_component apical plasma membrane|GO:0016324|11752391|IDA  go_process cell morphogenesis|GO:0000902|15766531|IMP  go_process pollen tube growth|GO:0009860|11752391|IMP  go_process cellulose microfibril organization|GO:0010215|15766531|IMP  go_process cytoplasmic microtubule organization|GO:0031122|15766531|IMP  go_function protein binding|GO:0005515|11752391|IDA  product RIC1 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 1); protein binding  note ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 1 (RIC1); FUNCTIONS IN: protein binding; INVOLVED IN: cell morphogenesis, pollen tube growth, cellulose microfibril organization, cytoplasmic microtubule organization; LOCATED IN: cortical microtubule, transverse to long axis, apical plasma membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095); BEST Arabidopsis thaliana protein match is: RIC3 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 3); protein binding (TAIR:AT1G04450.1); Has 301 Blast hits to 262 proteins in 64 species: Archae - 0; Bacteria - 11; Metazoa - 100; Fungi - 12; Plants - 104; Viruses - 2; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT2G33460.1p  transcript_id AT2G33460.1  protein_id AT2G33460.1p  transcript_id AT2G33460.1  
At2g33470	chr2:014177833	0.0	C/14177833-14177950,14177568-14177623,14177188-14177318,14176958-14177093,14176730-14176861,14176599-14176634	AT2G33470.1  CDS  gene_syn F4P9.24, F4P9_24, GLTP1, glycolipid transfer protein 1  gene GLTP1  go_component plasma membrane|GO:0005886|17644812|IDA  go_process glycolipid transport|GO:0046836||IEA  go_function glycolipid transporter activity|GO:0017089||IEA  go_function glycolipid binding|GO:0051861||IEA  product GLTP1 (glycolipid transfer protein 1); glycolipid binding / glycolipid transporter  note glycolipid transfer protein 1 (GLTP1); FUNCTIONS IN: glycolipid transporter activity, glycolipid binding; INVOLVED IN: glycolipid transport; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycolipid transfer protein, GLTP (InterPro:IPR014830); BEST Arabidopsis thaliana protein match is: glycolipid transfer protein-related (TAIR:AT3G21260.3); Has 458 Blast hits to 458 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 269; Fungi - 80; Plants - 73; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT2G33470.1p  transcript_id AT2G33470.1  protein_id AT2G33470.1p  transcript_id AT2G33470.1  
At2g33470	chr2:014177833	0.0	C/14177833-14177950,14177568-14177623,14177188-14177318,14176958-14177093,14176730-14176861,14176599-14176634	AT2G33470.2  CDS  gene_syn F4P9.24, F4P9_24, GLTP1, glycolipid transfer protein 1  gene GLTP1  go_component plasma membrane|GO:0005886|17644812|IDA  go_process glycolipid transport|GO:0046836||IEA  go_function glycolipid transporter activity|GO:0017089||IEA  go_function glycolipid binding|GO:0051861||IEA  product GLTP1 (glycolipid transfer protein 1); glycolipid binding / glycolipid transporter  note glycolipid transfer protein 1 (GLTP1); FUNCTIONS IN: glycolipid transporter activity, glycolipid binding; INVOLVED IN: glycolipid transport; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycolipid transfer protein, GLTP (InterPro:IPR014830); BEST Arabidopsis thaliana protein match is: glycolipid transfer protein-related (TAIR:AT3G21260.3); Has 458 Blast hits to 458 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 269; Fungi - 80; Plants - 73; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT2G33470.2p  transcript_id AT2G33470.2  protein_id AT2G33470.2p  transcript_id AT2G33470.2  
At2g33480	chr2:014181275	0.0	W/14181275-14181458,14181536-14181789,14181879-14182247	AT2G33480.1  CDS  gene_syn ANAC041, Arabidopsis NAC domain containing protein 41, F4P9.25, F4P9_25  gene ANAC041  go_process regulation of transcription|GO:0045449||IEA  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ANAC041 (Arabidopsis NAC domain containing protein 41); transcription factor  note Arabidopsis NAC domain containing protein 41 (ANAC041); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC083 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 83); transcription factor (TAIR:AT5G13180.1); Has 1670 Blast hits to 1660 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 39; Fungi - 2; Plants - 1622; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT2G33480.1p  transcript_id AT2G33480.1  protein_id AT2G33480.1p  transcript_id AT2G33480.1  
At2g33480	chr2:014181275	0.0	W/14181275-14181458,14181536-14181789,14181885-14182247	AT2G33480.2  CDS  gene_syn ANAC041, Arabidopsis NAC domain containing protein 41, F4P9.25, F4P9_25  gene ANAC041  go_process regulation of transcription|GO:0045449||IEA  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ANAC041 (Arabidopsis NAC domain containing protein 41); transcription factor  note Arabidopsis NAC domain containing protein 41 (ANAC041); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC083 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 83); transcription factor (TAIR:AT5G13180.1); Has 1625 Blast hits to 1622 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1624; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G33480.2p  transcript_id AT2G33480.2  protein_id AT2G33480.2p  transcript_id AT2G33480.2  
At2g33490	chr2:014183552	0.0	W/14183552-14183662,14184060-14184132,14184425-14184499,14184666-14184727,14184840-14184908,14185088-14185116,14185402-14185609,14185693-14185935,14186294-14186347,14186524-14187459,14187655-14187666	AT2G33490.1  CDS  gene_syn F4P9.26, F4P9_26  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: stem; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G26910.2); Has 1252 Blast hits to 967 proteins in 142 species: Archae - 4; Bacteria - 35; Metazoa - 580; Fungi - 225; Plants - 119; Viruses - 19; Other Eukaryotes - 270 (source: NCBI BLink).  protein_id AT2G33490.1p  transcript_id AT2G33490.1  protein_id AT2G33490.1p  transcript_id AT2G33490.1  
At2g33500	chr2:014189330	0.0	C/14189330-14190046,14188951-14189100,14188340-14188584,14188159-14188252	AT2G33500.2  CDS  gene_syn F4P9.27, F4P9_27  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (B-box type) family protein  note zinc finger (B-box type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: zinc finger (B-box type) family protein (TAIR:AT1G28050.1); Has 2185 Blast hits to 1279 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 2088; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT2G33500.2p  transcript_id AT2G33500.2  protein_id AT2G33500.2p  transcript_id AT2G33500.2  
At2g33500	chr2:014189330	0.0	C/14189330-14190046,14188951-14189100,14188340-14188587,14188159-14188252	AT2G33500.1  CDS  gene_syn F4P9.27, F4P9_27  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (B-box type) family protein  note zinc finger (B-box type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: zinc finger (B-box type) family protein (TAIR:AT1G28050.1); Has 2182 Blast hits to 1279 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 2085; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT2G33500.1p  transcript_id AT2G33500.1  protein_id AT2G33500.1p  transcript_id AT2G33500.1  
At2g33509	chr2:014193890	0.0	C/14193890-14194114	AT2G33509.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G33509.1p  transcript_id AT2G33509.1  protein_id AT2G33509.1p  transcript_id AT2G33509.1  
At2g33510	chr2:014194195	0.0	W/14194195-14194404,14195114-14195473	AT2G33510.1  CDS  gene_syn F4P9.28, F4P9_28  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28070.1); Has 6341 Blast hits to 1213 proteins in 158 species: Archae - 0; Bacteria - 40; Metazoa - 4967; Fungi - 231; Plants - 231; Viruses - 92; Other Eukaryotes - 780 (source: NCBI BLink).  protein_id AT2G33510.1p  transcript_id AT2G33510.1  protein_id AT2G33510.1p  transcript_id AT2G33510.1  
At2g33520	chr2:014196876	0.0	W/14196876-14196918,14197046-14197235,14197454-14197514	AT2G33520.1  CDS  gene_syn F4P9.29, F4P9_29  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT1G12810.1); Has 48 Blast hits to 48 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 2; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G33520.1p  transcript_id AT2G33520.1  protein_id AT2G33520.1p  transcript_id AT2G33520.1  
At2g33530	chr2:014200284	0.0	C/14200284-14200536,14200083-14200184,14199906-14200001,14199268-14199360,14199106-14199185,14198740-14199027,14198529-14198653,14198348-14198440,14198156-14198273,14197866-14198015	AT2G33530.1  CDS  gene_syn F4P9.30, F4P9_30, scpl46, serine carboxypeptidase-like 46  gene scpl46  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl46 (serine carboxypeptidase-like 46); serine-type carboxypeptidase  note serine carboxypeptidase-like 46 (scpl46); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: SCPL45 (SERINE CARBOXYPEPTIDASE-LIKE 45 PRECURSOR); serine-type carboxypeptidase (TAIR:AT1G28110.2); Has 2557 Blast hits to 2506 proteins in 333 species: Archae - 0; Bacteria - 228; Metazoa - 572; Fungi - 560; Plants - 882; Viruses - 0; Other Eukaryotes - 315 (source: NCBI BLink).  protein_id AT2G33530.1p  transcript_id AT2G33530.1  protein_id AT2G33530.1p  transcript_id AT2G33530.1  
At2g33540	chr2:014208175	0.0	C/14208175-14208797,14207914-14208049,14207780-14207835,14207620-14207680,14206190-14207503,14205474-14206112,14205253-14205399,14204902-14205170,14204702-14204813,14204358-14204615,14204230-14204276,14204081-14204144	AT2G33540.1  CDS  gene_syn C-TERMINAL DOMAIN PHOSPHATASE-LIKE 3, CPL3, F4P9.31, F4P9_31  gene CPL3  go_function phosphoprotein phosphatase activity|GO:0004721||IEA  go_component nucleus|GO:0005634|16905668|IDA  go_process response to salt stress|GO:0009651|16905668|IEP  go_function CTD phosphatase activity|GO:0008420||ISS  product CPL3 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 3); CTD phosphatase/ phosphoprotein phosphatase  note C-TERMINAL DOMAIN PHOSPHATASE-LIKE 3 (CPL3); FUNCTIONS IN: phosphoprotein phosphatase activity, CTD phosphatase activity; INVOLVED IN: response to salt stress; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: FCP1-like phosphatase, phosphatase domain (InterPro:IPR011947), NLI interacting factor (InterPro:IPR004274), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4); phosphoprotein phosphatase (TAIR:AT5G58003.1); Has 1270 Blast hits to 886 proteins in 180 species: Archae - 0; Bacteria - 80; Metazoa - 438; Fungi - 191; Plants - 138; Viruses - 2; Other Eukaryotes - 421 (source: NCBI BLink).  protein_id AT2G33540.1p  transcript_id AT2G33540.1  protein_id AT2G33540.1p  transcript_id AT2G33540.1  
At2g33550	chr2:014210899	0.0	C/14210899-14211487,14210766-14210810,14210180-14210490	AT2G33550.1  CDS  gene_syn F4P9.32, F4P9_32  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product gt-2-related  note gt-2-related; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT2G35640.1); Has 382 Blast hits to 375 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 10; Plants - 206; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).  protein_id AT2G33550.1p  transcript_id AT2G33550.1  protein_id AT2G33550.1p  transcript_id AT2G33550.1  
At2g33560	chr2:014215719	0.0	C/14215719-14215918,14215571-14215630,14215310-14215454,14215064-14215221,14214898-14214982,14214739-14214805,14214602-14214662,14214310-14214484,14214130-14214215,14213969-14214055,14213810-14213873	AT2G33560.1  CDS  gene_syn F4P9.33, F4P9_33  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product spindle checkpoint protein-related  note spindle checkpoint protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Mitotic checkpoint serine/threonine protein kinase, Bub1 (InterPro:IPR015661), Mad3/BUB1 homology region 1 (InterPro:IPR013212); BEST Arabidopsis thaliana protein match is: protein kinase-related (TAIR:AT5G05510.1); Has 335 Blast hits to 335 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 179; Fungi - 102; Plants - 42; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT2G33560.1p  transcript_id AT2G33560.1  protein_id AT2G33560.1p  transcript_id AT2G33560.1  
At2g33570	chr2:014217361	0.0	W/14217361-14218496,14218689-14219043	AT2G33570.1  CDS  gene_syn F4P9.34, F4P9_34  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44670.1); Has 131 Blast hits to 131 proteins in 18 species: Archae - 2; Bacteria - 4; Metazoa - 36; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G33570.1p  transcript_id AT2G33570.1  protein_id AT2G33570.1p  transcript_id AT2G33570.1  
At2g33580	chr2:014219848	0.0	C/14219848-14221842	AT2G33580.1  CDS  gene_syn F4P9.35, F4P9_35  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process cell wall macromolecule catabolic process|GO:0016998||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein / peptidoglycan-binding LysM domain-containing protein  note protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation, cell wall macromolecule catabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (TAIR:AT2G23770.1); Has 73583 Blast hits to 72807 proteins in 2831 species: Archae - 40; Bacteria - 6039; Metazoa - 33365; Fungi - 5168; Plants - 16933; Viruses - 330; Other Eukaryotes - 11708 (source: NCBI BLink).  protein_id AT2G33580.1p  transcript_id AT2G33580.1  protein_id AT2G33580.1p  transcript_id AT2G33580.1  
At2g33585	chr2:014223712	0.0	C/14223712-14224167,14223546-14223617,14223403-14223456	AT2G33585.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 15 Blast hits to 15 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G33585.1p  transcript_id AT2G33585.1  protein_id AT2G33585.1p  transcript_id AT2G33585.1  
At2g33590	chr2:014224622	0.0	W/14224622-14224742,14225038-14225207,14225286-14225471,14225556-14225721,14225825-14226014,14226233-14226365	AT2G33590.1  CDS  gene_syn F4P9.36, F4P9_36  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  go_component cellular_component|GO:0005575||ND  go_process lignin biosynthetic process|GO:0009809||ISS  go_function cinnamoyl-CoA reductase activity|GO:0016621||ISS  product cinnamoyl-CoA reductase family  note cinnamoyl-CoA reductase family; FUNCTIONS IN: coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity; INVOLVED IN: response to cadmium ion, lignin biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamoyl-CoA reductase family (TAIR:AT2G33600.1); Has 9166 Blast hits to 9153 proteins in 1217 species: Archae - 176; Bacteria - 3291; Metazoa - 408; Fungi - 557; Plants - 1468; Viruses - 54; Other Eukaryotes - 3212 (source: NCBI BLink).  protein_id AT2G33590.1p  transcript_id AT2G33590.1  protein_id AT2G33590.1p  transcript_id AT2G33590.1  
At2g33600	chr2:014226873	0.0	W/14226873-14226993,14227237-14227406,14227480-14227665,14227740-14227905,14228001-14228190,14228366-14228498	AT2G33600.1  CDS  gene_syn F4P9.37, F4P9_37  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  go_process lignin biosynthetic process|GO:0009809||ISS  go_function cinnamoyl-CoA reductase activity|GO:0016621||ISS  product cinnamoyl-CoA reductase family  note cinnamoyl-CoA reductase family; FUNCTIONS IN: coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamoyl-CoA reductase family (TAIR:AT2G33590.1); Has 9430 Blast hits to 9421 proteins in 1243 species: Archae - 146; Bacteria - 3634; Metazoa - 405; Fungi - 585; Plants - 1484; Viruses - 61; Other Eukaryotes - 3115 (source: NCBI BLink).  protein_id AT2G33600.1p  transcript_id AT2G33600.1  protein_id AT2G33600.1p  transcript_id AT2G33600.1  
At2g33610	chr2:014229023	0.0	W/14229023-14229185,14229280-14229689,14229776-14230186,14230541-14230667,14230756-14230886,14230982-14231149	AT2G33610.1  CDS  gene_syn ATSWI3B, CHB2, CHROMATIN REMODELING COMPLEX SUBUNIT B, F4P9.38, F4P9_38, SWITCH SUBUNIT 3  gene ATSWI3B  function Homologous to yeast SWI3 & RSC8, components of the SWI/SNF and RSC chromatin remodeling complexes. Interacts with BSH, AtSWI3A, SWI3C and FCA. Expressed ubiquitously.  go_function DNA binding|GO:0003677||IEA  go_component nucleus|GO:0005634|12140326|IDA  go_component SWI/SNF complex|GO:0016514|12140326|ISS  go_process chromatin remodeling|GO:0006338|12140326|ISS  go_function DNA binding|GO:0003677||ISS  product ATSWI3B (SWITCH SUBUNIT 3); DNA binding  note SWITCH SUBUNIT 3 (ATSWI3B); FUNCTIONS IN: DNA binding; INVOLVED IN: chromatin remodeling; LOCATED IN: SWI/SNF complex, nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SWIRM (InterPro:IPR007526), SANT, eukarya (InterPro:IPR017884); BEST Arabidopsis thaliana protein match is: ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A); DNA binding (TAIR:AT2G47620.1); Has 808 Blast hits to 591 proteins in 138 species: Archae - 0; Bacteria - 2; Metazoa - 385; Fungi - 212; Plants - 116; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT2G33610.1p  transcript_id AT2G33610.1  protein_id AT2G33610.1p  transcript_id AT2G33610.1  
At2g33620	chr2:014234749	0.0	W/14234749-14235217,14235521-14235573,14235847-14235978,14236073-14236234,14236324-14236563	AT2G33620.1  CDS  gene_syn F4P9.39, F4P9_39  go_function DNA binding|GO:0003677||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_function DNA binding|GO:0003677||ISS  product DNA-binding family protein / AT-hook protein 1 (AHP1)  note DNA-binding family protein / AT-hook protein 1 (AHP1); FUNCTIONS IN: DNA binding; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding, conserved site (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: DNA-binding family protein (TAIR:AT4G17950.1); Has 574 Blast hits to 572 proteins in 106 species: Archae - 0; Bacteria - 154; Metazoa - 3; Fungi - 0; Plants - 416; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G33620.1p  transcript_id AT2G33620.1  protein_id AT2G33620.1p  transcript_id AT2G33620.1  
At2g33620	chr2:014234749	0.0	W/14234749-14235217,14235521-14235573,14235847-14235978,14236073-14236234,14236324-14236563	AT2G33620.2  CDS  gene_syn F4P9.39, F4P9_39  go_function DNA binding|GO:0003677||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_function DNA binding|GO:0003677||ISS  product DNA-binding family protein / AT-hook protein 1 (AHP1)  note DNA-binding family protein / AT-hook protein 1 (AHP1); FUNCTIONS IN: DNA binding; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding, conserved site (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: DNA-binding family protein (TAIR:AT4G17950.1); Has 574 Blast hits to 572 proteins in 106 species: Archae - 0; Bacteria - 154; Metazoa - 3; Fungi - 0; Plants - 416; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G33620.2p  transcript_id AT2G33620.2  protein_id AT2G33620.2p  transcript_id AT2G33620.2  
At2g33620	chr2:014234749	0.0	W/14234749-14235217,14235521-14235573,14235847-14235978,14236073-14236234,14236324-14236563	AT2G33620.3  CDS  gene_syn F4P9.39, F4P9_39  go_function DNA binding|GO:0003677||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_function DNA binding|GO:0003677||ISS  product DNA-binding family protein / AT-hook protein 1 (AHP1)  note DNA-binding family protein / AT-hook protein 1 (AHP1); FUNCTIONS IN: DNA binding; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding, conserved site (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: DNA-binding family protein (TAIR:AT4G17950.1); Has 574 Blast hits to 572 proteins in 106 species: Archae - 0; Bacteria - 154; Metazoa - 3; Fungi - 0; Plants - 416; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G33620.3p  transcript_id AT2G33620.3  protein_id AT2G33620.3p  transcript_id AT2G33620.3  
At2g33620	chr2:014234749	0.0	W/14234749-14235217,14235521-14235573,14235847-14235978,14236073-14236234,14236324-14236563	AT2G33620.4  CDS  gene_syn F4P9.39, F4P9_39  go_function DNA binding|GO:0003677||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_function DNA binding|GO:0003677||ISS  product DNA-binding family protein / AT-hook protein 1 (AHP1)  note DNA-binding family protein / AT-hook protein 1 (AHP1); FUNCTIONS IN: DNA binding; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding, conserved site (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: DNA-binding family protein (TAIR:AT4G17950.1); Has 574 Blast hits to 572 proteins in 106 species: Archae - 0; Bacteria - 154; Metazoa - 3; Fungi - 0; Plants - 416; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G33620.4p  transcript_id AT2G33620.4  protein_id AT2G33620.4p  transcript_id AT2G33620.4  
At2g33630	chr2:014238545	0.0	C/14238545-14238734,14238086-14238428,14237742-14238010,14237471-14237667,14236951-14237394	AT2G33630.1  CDS  gene_syn F4P9.40, F4P9_40  go_process steroid biosynthetic process|GO:0006694||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function 3-beta-hydroxy-delta5-steroid dehydrogenase activity|GO:0003854||IEA  go_function binding|GO:0005488||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process steroid biosynthetic process|GO:0006694||ISS  go_function 3-beta-hydroxy-delta5-steroid dehydrogenase activity|GO:0003854||ISS  product 3-beta hydroxysteroid dehydrogenase/isomerase family protein  note 3-beta hydroxysteroid dehydrogenase/isomerase family protein; FUNCTIONS IN: 3-beta-hydroxy-delta5-steroid dehydrogenase activity, binding, catalytic activity; INVOLVED IN: steroid biosynthetic process, metabolic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 3-beta hydroxysteroid dehydrogenase/isomerase (InterPro:IPR002225), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: AT3BETAHSD/D1 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1); 3-beta-hydroxy-delta5-steroid dehydrogenase/ sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) (TAIR:AT1G47290.2); Has 10588 Blast hits to 10587 proteins in 1430 species: Archae - 275; Bacteria - 6003; Metazoa - 517; Fungi - 263; Plants - 260; Viruses - 121; Other Eukaryotes - 3149 (source: NCBI BLink).  protein_id AT2G33630.1p  transcript_id AT2G33630.1  protein_id AT2G33630.1p  transcript_id AT2G33630.1  
At2g33640	chr2:014239500	0.0	W/14239500-14239544,14239853-14239966,14240087-14240207,14240290-14240465,14240543-14240611,14240697-14240768,14240880-14241008,14241095-14241175,14241284-14241493,14241560-14242240	AT2G33640.1  CDS  gene_syn F4P9.41, F4P9_41  go_component endomembrane system|GO:0012505||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger (DHHC type) family protein  note zinc finger (DHHC type) family protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: zinc finger (DHHC type) family protein (TAIR:AT4G15080.1); Has 3757 Blast hits to 3615 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 1829; Fungi - 428; Plants - 397; Viruses - 0; Other Eukaryotes - 1103 (source: NCBI BLink).  protein_id AT2G33640.1p  transcript_id AT2G33640.1  protein_id AT2G33640.1p  transcript_id AT2G33640.1  
At2g33650	chr2:014243131	0.0	W/14243131-14243202	AT2G33650.1  tRNA  gene_syn 6548.TRNA-ASP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asp (anticodon: GTC)  transcript_id AT2G33650.1  
At2g33655	chr2:014244399	0.0	C/14244399-14244569,14243338-14243487,14242915-14243046	AT2G33655.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527); BEST Arabidopsis thaliana protein match is: EDA1 (embryo sac development arrest 1) (TAIR:AT1G59680.1); Has 362 Blast hits to 308 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 362; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G33655.1p  transcript_id AT2G33655.1  protein_id AT2G33655.1p  transcript_id AT2G33655.1  
At2g33660	chr2:014244699	0.0	W/14244699-14244770	AT2G33660.1  tRNA  gene_syn 6548.TRNA-ASP-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asp (anticodon: GTC)  transcript_id AT2G33660.1  
At2g33670	chr2:014245138	0.0	W/14245138-14245281,14245367-14245424,14245509-14245714,14245804-14245920,14246002-14246059,14246146-14246234,14246326-14246400,14246494-14246582,14246670-14246719,14246795-14246835,14246928-14247101,14247194-14247229,14247306-14247373,14247482-14247542,14247640-14247879	AT2G33670.1  CDS  gene_syn ATMLO5, F4P9.44, F4P9_44, MILDEW RESISTANCE LOCUS O 5, MLO5  gene MLO5  function A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO5 belongs to the clade III, with AtMLO7, AtMLO8, AtMLO9, and AtMLO10. The gene is expressed during seedling growth, in cotyledon vascular system, and in stigma, anther and pollen grains; it was not expressed in rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).  go_component integral to membrane|GO:0016021||IEA  go_process cell death|GO:0008219||IEA  go_component plasma membrane|GO:0005886||ISS  go_process defense response|GO:0006952||ISS  go_process cell death|GO:0008219||ISS  go_function calmodulin binding|GO:0005516||ISS  product MLO5 (MILDEW RESISTANCE LOCUS O 5); calmodulin binding  note MILDEW RESISTANCE LOCUS O 5 (MLO5); FUNCTIONS IN: calmodulin binding; INVOLVED IN: cell death, defense response; LOCATED IN: integral to membrane, plasma membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326); BEST Arabidopsis thaliana protein match is: MLO9 (MILDEW RESISTANCE LOCUS O 9); calmodulin binding (TAIR:AT1G42560.1); Has 299 Blast hits to 295 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 293; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT2G33670.1p  transcript_id AT2G33670.1  protein_id AT2G33670.1p  transcript_id AT2G33670.1  
At2g33680	chr2:014249608	0.0	W/14249608-14251791	AT2G33680.1  CDS  gene_syn T1B8.1, T1B8_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G13600.1); Has 16870 Blast hits to 4919 proteins in 148 species: Archae - 0; Bacteria - 2; Metazoa - 50; Fungi - 51; Plants - 16481; Viruses - 0; Other Eukaryotes - 286 (source: NCBI BLink).  protein_id AT2G33680.1p  transcript_id AT2G33680.1  protein_id AT2G33680.1p  transcript_id AT2G33680.1  
At2g33690	chr2:014252199	0.0	W/14252199-14252414	AT2G33690.1  CDS  gene_syn T1B8.27, T1B8_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product late embryogenesis abundant protein, putative / LEA protein, putative  note late embryogenesis abundant protein, putative / LEA protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein 18 (InterPro:IPR018930); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23120.1); Has 25 Blast hits to 25 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G33690.1p  transcript_id AT2G33690.1  protein_id AT2G33690.1p  transcript_id AT2G33690.1  
At2g33700	chr2:014254200	0.0	W/14254200-14254382,14254470-14254661,14254812-14255017,14255223-14255784	AT2G33700.1  CDS  gene_syn T1B8.2, T1B8_2  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT3G51470.1); Has 4375 Blast hits to 4330 proteins in 315 species: Archae - 3; Bacteria - 175; Metazoa - 1377; Fungi - 480; Plants - 1317; Viruses - 7; Other Eukaryotes - 1016 (source: NCBI BLink).  protein_id AT2G33700.1p  transcript_id AT2G33700.1  protein_id AT2G33700.1p  transcript_id AT2G33700.1  
At2g33705	chr2:014256151	0.0	W/14256151-14256360	AT2G33705.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G61340.1); Has 261 Blast hits to 259 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 261; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G33705.1p  transcript_id AT2G33705.1  protein_id AT2G33705.1p  transcript_id AT2G33705.1  
At2g33707	chr2:014257019	0.0	C/14257019-14257258	AT2G33707.1  pseudogenic_transcript  pseudo  function Encodes a defensin-like (DEFL) family protein.  
At2g33710	chr2:014260472	0.0	C/14260472-14260652,14259271-14259746	AT2G33710.1  CDS  gene_syn T1B8.3, T1B8_3  function encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleus|GO:0005634||ISS  go_component nucleolus|GO:0005730|15610358|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to chitin|GO:0010200|17722694|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor family protein  note AP2 domain-containing transcription factor family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to chitin, regulation of transcription, DNA-dependent; LOCATED IN: nucleolus, nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT5G50080.1); Has 3927 Blast hits to 3756 proteins in 204 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 3893; Viruses - 3; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT2G33710.1p  transcript_id AT2G33710.1  protein_id AT2G33710.1p  transcript_id AT2G33710.1  
At2g33720	chr2:014263776	0.0	W/14263776-14264087,14264321-14264989	AT2G33720.1  CDS  gene_syn T1B8.29, T1B8_29  go_component chloroplast|GO:0009507||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78640.1); Has 36 Blast hits to 34 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G33720.1p  transcript_id AT2G33720.1  protein_id AT2G33720.1p  transcript_id AT2G33720.1  
At2g33730	chr2:014265679	0.0	C/14265679-14267880	AT2G33730.1  CDS  gene_syn T1B8.4, T1B8_4  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD box RNA helicase, putative  note DEAD box RNA helicase, putative; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding (TAIR:AT1G28180.1); Has 105850 Blast hits to 52945 proteins in 1991 species: Archae - 661; Bacteria - 41429; Metazoa - 30663; Fungi - 9349; Plants - 3951; Viruses - 317; Other Eukaryotes - 19480 (source: NCBI BLink).  protein_id AT2G33730.1p  transcript_id AT2G33730.1  protein_id AT2G33730.1p  transcript_id AT2G33730.1  
At2g33735	chr2:014269332	0.0	C/14269332-14269394,14269169-14269246,14268999-14269074,14268692-14268762,14268532-14268603	AT2G33735.1  CDS  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT5G16650.1); Has 15781 Blast hits to 15780 proteins in 1920 species: Archae - 102; Bacteria - 5290; Metazoa - 3295; Fungi - 1378; Plants - 1136; Viruses - 11; Other Eukaryotes - 4569 (source: NCBI BLink).  protein_id AT2G33735.1p  transcript_id AT2G33735.1  protein_id AT2G33735.1p  transcript_id AT2G33735.1  
At2g33740	chr2:014269590	0.0	W/14269590-14269759,14269835-14269941,14270457-14270519,14270880-14270911,14271228-14271322,14271442-14271523	AT2G33740.2  CDS  gene_syn CUTA, T1B8.5, T1B8_5  gene CUTA  function encodes a copper binding protein that forms tetramers in vitro. Gene is expressed in all tissues examined and protein is localized to the chloroplast.  go_process response to metal ion|GO:0010038||IEA  go_component chloroplast|GO:0009507|12795705|IDA  go_function copper ion binding|GO:0005507|12795705|IDA  product CUTA; copper ion binding  note CUTA; FUNCTIONS IN: copper ion binding; INVOLVED IN: response to metal ion; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Divalent ion tolerance protein, CutA1 (InterPro:IPR004323), Nitrogen regulatory PII-like, alpha/beta (InterPro:IPR011322); Has 1815 Blast hits to 1815 proteins in 619 species: Archae - 107; Bacteria - 976; Metazoa - 171; Fungi - 2; Plants - 23; Viruses - 0; Other Eukaryotes - 536 (source: NCBI BLink).  protein_id AT2G33740.2p  transcript_id AT2G33740.2  protein_id AT2G33740.2p  transcript_id AT2G33740.2  
At2g33740	chr2:014269590	0.0	W/14269590-14269759,14269835-14269941,14270457-14270519,14270880-14270911,14271228-14271326	AT2G33740.1  CDS  gene_syn CUTA, T1B8.5, T1B8_5  gene CUTA  function encodes a copper binding protein that forms tetramers in vitro. Gene is expressed in all tissues examined and protein is localized to the chloroplast.  go_process response to metal ion|GO:0010038||IEA  go_component chloroplast|GO:0009507|12795705|IDA  go_function copper ion binding|GO:0005507|12795705|IDA  product CUTA; copper ion binding  note CUTA; FUNCTIONS IN: copper ion binding; INVOLVED IN: response to metal ion; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Divalent ion tolerance protein, CutA1 (InterPro:IPR004323), Nitrogen regulatory PII-like, alpha/beta (InterPro:IPR011322); Has 1663 Blast hits to 1663 proteins in 599 species: Archae - 97; Bacteria - 946; Metazoa - 170; Fungi - 2; Plants - 23; Viruses - 0; Other Eukaryotes - 425 (source: NCBI BLink).  protein_id AT2G33740.1p  transcript_id AT2G33740.1  protein_id AT2G33740.1p  transcript_id AT2G33740.1  
At2g33750	chr2:014272537	0.0	C/14272537-14273265,14271794-14272141	AT2G33750.1  CDS  gene_syn ATPUP2, T1B8.6, T1B8_6  gene ATPUP2  function Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.  go_component membrane|GO:0016020|10662864|TAS  go_process purine transport|GO:0006863|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345||ISS  product ATPUP2; purine transmembrane transporter  note ATPUP2; FUNCTIONS IN: purine transmembrane transporter activity; INVOLVED IN: purine transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: PUP1 (PURINE PERMEASE 1); purine nucleoside transmembrane transporter/ purine transmembrane transporter (TAIR:AT1G28230.1); Has 554 Blast hits to 545 proteins in 71 species: Archae - 0; Bacteria - 85; Metazoa - 4; Fungi - 9; Plants - 217; Viruses - 0; Other Eukaryotes - 239 (source: NCBI BLink).  protein_id AT2G33750.1p  transcript_id AT2G33750.1  protein_id AT2G33750.1p  transcript_id AT2G33750.1  
At2g33750	chr2:014272570	0.0	C/14272570-14273265,14271794-14272141	AT2G33750.2  CDS  gene_syn ATPUP2, T1B8.6, T1B8_6  gene ATPUP2  function Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.  go_component membrane|GO:0016020|10662864|TAS  go_process purine transport|GO:0006863|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345||ISS  product ATPUP2; purine transmembrane transporter  note ATPUP2; FUNCTIONS IN: purine transmembrane transporter activity; INVOLVED IN: purine transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: PUP1 (PURINE PERMEASE 1); purine nucleoside transmembrane transporter/ purine transmembrane transporter (TAIR:AT1G28230.1); Has 597 Blast hits to 589 proteins in 63 species: Archae - 0; Bacteria - 73; Metazoa - 6; Fungi - 8; Plants - 229; Viruses - 0; Other Eukaryotes - 281 (source: NCBI BLink).  protein_id AT2G33750.2p  transcript_id AT2G33750.2  protein_id AT2G33750.2p  transcript_id AT2G33750.2  
At2g33760	chr2:014275800	0.0	W/14275800-14277551	AT2G33760.1  CDS  gene_syn T1B8.7, T1B8_7  go_component cellular_component|GO:0005575||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21065.1); Has 13721 Blast hits to 5234 proteins in 174 species: Archae - 1; Bacteria - 4; Metazoa - 225; Fungi - 55; Plants - 13158; Viruses - 0; Other Eukaryotes - 278 (source: NCBI BLink).  protein_id AT2G33760.1p  transcript_id AT2G33760.1  protein_id AT2G33760.1p  transcript_id AT2G33760.1  
At2g33770	chr2:014280079	0.0	C/14280079-14281482,14279647-14279784,14279070-14279501,14278918-14278981,14278618-14278757,14278104-14278415,14277785-14278018	AT2G33770.1  CDS  gene_syn ATUBC24, PHO2, PHOSPHATE 2, T1B8.8, T1B8_8, UBC24, UBIQUITIN-CONJUGATING ENZYME 24  gene PHO2  function Encodes a ubiquitin-conjugating E2 enzyme. UBC24 mRNA accumulation is suppressed by miR399f, miR399b and miR399c. Involved in phosphate starvation response.  go_component cellular_component|GO:0005575||ND  go_process phosphate transport|GO:0006817|9637070|IMP  go_process cellular response to phosphate starvation|GO:0016036|16303564|IMP  go_process phosphate ion homeostasis|GO:0055062|18390805|IMP  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product PHO2 (PHOSPHATE 2); ubiquitin-protein ligase  note PHOSPHATE 2 (PHO2); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: cellular response to phosphate starvation, phosphate transport, phosphate ion homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: vascular tissue; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC23 (UBIQUITIN-CONJUGATING ENZYME 23); small conjugating protein ligase/ ubiquitin-protein ligase (TAIR:AT2G16920.1); Has 4732 Blast hits to 4643 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 2220; Fungi - 850; Plants - 904; Viruses - 13; Other Eukaryotes - 745 (source: NCBI BLink).  protein_id AT2G33770.1p  transcript_id AT2G33770.1  protein_id AT2G33770.1p  transcript_id AT2G33770.1  
At2g33775	chr2:014288546	0.0	W/14288546-14288878	AT2G33775.1  CDS  gene_syn RALFL19, ralf-like 19  gene RALFL19  function Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  go_component apoplast|GO:0048046|12611624|ISS  go_process cell-cell signaling|GO:0007267|12611624|ISS  go_function signal transducer activity|GO:0004871|12611624|TAS  product RALFL19 (ralf-like 19); signal transducer  note ralf-like 19 (RALFL19); FUNCTIONS IN: signal transducer activity; INVOLVED IN: cell-cell signaling; LOCATED IN: apoplast; CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALFL4 (ralf-like 4); signal transducer (TAIR:AT1G28270.1); Has 151 Blast hits to 151 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G33775.1p  transcript_id AT2G33775.1  protein_id AT2G33775.1p  transcript_id AT2G33775.1  
At2g33780	chr2:014291117	0.0	C/14291117-14291731	AT2G33780.1  CDS  gene_syn T1B8.28, T1B8_28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product VQ motif-containing protein  note VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT1G28280.2); Has 99 Blast hits to 99 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G33780.1p  transcript_id AT2G33780.1  protein_id AT2G33780.1p  transcript_id AT2G33780.1  
At2g33790	chr2:014294829	0.0	C/14294829-14295237,14293862-14294172	AT2G33790.1  CDS  gene_syn AGP30, ARABINOGALACTAN PROTEIN30, ATAGP30, T1B8.9, T1B8_9  gene AGP30  function pollen Ole e 1 allergen protein containing 14.6% proline residues, similar to arabinogalactan protein (Daucus carota) GI:11322245, SP:Q03211 Pistil-specific extensin-like protein precursor (PELP) {Nicotiana tabacum}; contains Pfam profile PF01190: Pollen proteins Ole e I family  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product AGP30 (ARABINOGALACTAN PROTEIN30)  note ARABINOGALACTAN PROTEIN30 (AGP30); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen and extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: AGP31 (arabinogalactan-protein 31) (TAIR:AT1G28290.2); Has 4478 Blast hits to 1782 proteins in 263 species: Archae - 6; Bacteria - 231; Metazoa - 703; Fungi - 263; Plants - 1052; Viruses - 388; Other Eukaryotes - 1835 (source: NCBI BLink).  protein_id AT2G33790.1p  transcript_id AT2G33790.1  protein_id AT2G33790.1p  transcript_id AT2G33790.1  
At2g33793	chr2:014297107	0.0	W/14297107-14297219,14297326-14297415,14298314-14298373,14298479-14298518,14298603-14298696,14298806-14298865,14298951-14299042,14299128-14299217	AT2G33793.1  CDS  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46980.2); Has 4565 Blast hits to 3481 proteins in 347 species: Archae - 42; Bacteria - 428; Metazoa - 1514; Fungi - 226; Plants - 107; Viruses - 8; Other Eukaryotes - 2240 (source: NCBI BLink).  protein_id AT2G33793.1p  transcript_id AT2G33793.1  protein_id AT2G33793.1p  transcript_id AT2G33793.1  
At2g33796	chr2:014300005	0.0	C/14300005-14300252,14299709-14299790	AT2G33796.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G25860.1); Has 67 Blast hits to 67 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G33796.1p  transcript_id AT2G33796.1  protein_id AT2G33796.1p  transcript_id AT2G33796.1  
At2g33800	chr2:014301691	0.0	C/14301691-14302352,14300925-14301174	AT2G33800.1  CDS  gene_syn T1B8.10, T1B8_10  go_component nucleus|GO:0005634|14617066|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function RNA binding|GO:0003723||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component intracellular|GO:0005622||ISS  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_process response to cold|GO:0009409|14617066|IEP  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein S5 family protein  note ribosomal protein S5 family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: response to cadmium ion, response to cold, translation; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5, N-terminal (InterPro:IPR013810), Double-stranded RNA-binding-like (InterPro:IPR014720), Ribosomal protein S5, bacterial-type (InterPro:IPR005712), Ribosomal protein S5, C-terminal (InterPro:IPR005324), Ribosomal protein S5 (InterPro:IPR000851), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721), Ribosomal protein S5, N-terminal, conserved site (InterPro:IPR018192); Has 6397 Blast hits to 6393 proteins in 1672 species: Archae - 183; Bacteria - 2911; Metazoa - 467; Fungi - 174; Plants - 113; Viruses - 0; Other Eukaryotes - 2549 (source: NCBI BLink).  protein_id AT2G33800.1p  transcript_id AT2G33800.1  protein_id AT2G33800.1p  transcript_id AT2G33800.1  
At2g33815	chr2:014305008	0.0	C/14305008-14306053	AT2G33815.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G33810  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G33815.1  
At2g33810	chr2:014305342	0.0	W/14305342-14305640,14305732-14305828	AT2G33810.1  CDS  gene_syn SPL3, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3, T1B8.11, T1B8_11  gene SPL3  function Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It binds DNA, may directly regulate AP1, and is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3 UTR.  go_component nucleus|GO:0005634|9301089|ISS  go_process flower development|GO:0009908|9301089|TAS  go_process positive regulation of flower development|GO:0009911|9301089|IMP  go_process inflorescence development|GO:0010229|17217458|IMP  go_process regulation of vegetative phase change|GO:0010321|16914499|IMP  go_function DNA binding|GO:0003677|9301089|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9301089|ISS  go_function transcription factor activity|GO:0003700|9301089|TAS  product SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3); DNA binding / transcription factor  note SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3 (SPL3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: flower development, inflorescence development, regulation of vegetative phase change, positive regulation of flower development; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Squamosa promoter-binding protein (InterPro:IPR017238), Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4); DNA binding / transcription factor (TAIR:AT1G53160.2); Has 565 Blast hits to 562 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 10; Plants - 525; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G33810.1p  transcript_id AT2G33810.1  protein_id AT2G33810.1p  transcript_id AT2G33810.1  
At2g33820	chr2:014308177	0.0	C/14308177-14308293,14307613-14307702,14307337-14307438,14307151-14307255,14306963-14307061,14306704-14306892,14306517-14306615,14306293-14306427	AT2G33820.1  CDS  gene_syn ATMBAC1, MBAC1, T1B8.12, T1B8_12  gene MBAC1  function encodes a mitochondrial ornithine transporter which exports ornithine from the mitochondrion to the cytosol  go_component mitochondrial inner membrane|GO:0005743||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function L-ornithine transmembrane transporter activity|GO:0000064|12631327|IGI  go_function L-histidine transmembrane transporter activity|GO:0005290|12631327|IDA  go_function binding|GO:0005488||ISS  go_function arginine transmembrane transporter activity|GO:0015181|12631327|IDA  go_function L-lysine transmembrane transporter activity|GO:0015189|12631327|IDA  product MBAC1; L-histidine transmembrane transporter/ L-lysine transmembrane transporter/ L-ornithine transmembrane transporter/ arginine transmembrane transporter/ binding  note MBAC1; FUNCTIONS IN: L-ornithine transmembrane transporter activity, L-lysine transmembrane transporter activity, L-histidine transmembrane transporter activity, arginine transmembrane transporter activity, binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: BOU (A BOUT DE SOUFFLE); binding / transporter (TAIR:AT5G46800.1); Has 16604 Blast hits to 9589 proteins in 349 species: Archae - 0; Bacteria - 0; Metazoa - 8824; Fungi - 4029; Plants - 2225; Viruses - 0; Other Eukaryotes - 1526 (source: NCBI BLink).  protein_id AT2G33820.1p  transcript_id AT2G33820.1  protein_id AT2G33820.1p  transcript_id AT2G33820.1  
At2g33830	chr2:014310196	0.0	C/14310196-14310286,14309891-14310083,14309768-14309804	AT2G33830.1  CDS  go_component cellular_component|GO:0005575||ND  product dormancy/auxin associated family protein  note dormancy/auxin associated family protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dormancyauxin associated (InterPro:IPR008406); BEST Arabidopsis thaliana protein match is: DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1) (TAIR:AT1G28330.1); Has 120 Blast hits to 120 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G33830.1p  transcript_id AT2G33830.1  protein_id AT2G33830.1p  transcript_id AT2G33830.1  
At2g33830	chr2:014310196	0.0	C/14310196-14310286,14309891-14310089,14309768-14309804	AT2G33830.2  CDS  go_component cellular_component|GO:0005575||ND  product dormancy/auxin associated family protein  note dormancy/auxin associated family protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dormancyauxin associated (InterPro:IPR008406); BEST Arabidopsis thaliana protein match is: DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1) (TAIR:AT1G28330.1); Has 114 Blast hits to 114 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G33830.2p  transcript_id AT2G33830.2  protein_id AT2G33830.2p  transcript_id AT2G33830.2  
At2g33835	chr2:014314443	0.0	C/14314443-14314566,14314009-14314102,14313701-14313924,14312271-14313562,14312145-14312174	AT2G33835.1  CDS  gene_syn FES1  gene FES1  function Encodes a zinc finger domain containing protein that is expressed in the shoot/root apex and vasculature, and acts with FRI to repress flowering.FES1 mutants in a Col(FRI+) background will flower early under inductive conditions.  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process positive regulation of vernalization response|GO:0010220|16291783|IGI  go_function nucleic acid binding|GO:0003676||ISS  product FES1; nucleic acid binding / zinc ion binding  note FES1; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: positive regulation of vernalization response; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, vascular tissue, root tip; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger protein-related (TAIR:AT3G18640.1); Has 256 Blast hits to 137 proteins in 41 species: Archae - 0; Bacteria - 31; Metazoa - 34; Fungi - 29; Plants - 55; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT2G33835.1p  transcript_id AT2G33835.1  protein_id AT2G33835.1p  transcript_id AT2G33835.1  
At2g33840	chr2:014315011	0.0	W/14315011-14315111,14315301-14315454,14315540-14315823,14315916-14316012,14316262-14316367,14316462-14316544,14316637-14316782,14316914-14317019,14317164-14317223,14317309-14317329	AT2G33840.1  CDS  gene_syn T1B8.14, T1B8_14  go_component cytoplasm|GO:0005737||IEA  go_process translation|GO:0006412||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_process tyrosyl-tRNA aminoacylation|GO:0006437||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function tyrosine-tRNA ligase activity|GO:0004831||IEA  go_function ATP binding|GO:0005524||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||ISS  go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS  go_function ATP binding|GO:0005524||ISS  product tRNA synthetase class I (W and Y) family protein  note tRNA synthetase class I (W and Y) family protein; FUNCTIONS IN: tyrosine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: translation, tRNA aminoacylation for protein translation, tyrosyl-tRNA aminoacylation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Tyrosine tRNA ligase, archaeal/eukaryotic (InterPro:IPR016485), Tyrosyl-tRNA synthetase, class Ib, archaeal/eukaryotic cytosolic (InterPro:IPR015624), Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (InterPro:IPR002307), Aminoacyl-tRNA synthetase, class Ib (InterPro:IPR002305); BEST Arabidopsis thaliana protein match is: ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / tyrosine-tRNA ligase (TAIR:AT1G28350.1); Has 3646 Blast hits to 3629 proteins in 1010 species: Archae - 254; Bacteria - 1669; Metazoa - 303; Fungi - 167; Plants - 79; Viruses - 5; Other Eukaryotes - 1169 (source: NCBI BLink).  protein_id AT2G33840.1p  transcript_id AT2G33840.1  protein_id AT2G33840.1p  transcript_id AT2G33840.1  
At2g33845	chr2:014317781	0.0	W/14317781-14318138,14318522-14318712	AT2G33845.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DNA-binding protein-related  note DNA-binding protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340); BEST Arabidopsis thaliana protein match is: DNA-binding protein-related (TAIR:AT4G28440.1); Has 158 Blast hits to 158 proteins in 34 species: Archae - 14; Bacteria - 0; Metazoa - 2; Fungi - 4; Plants - 99; Viruses - 26; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT2G33845.1p  transcript_id AT2G33845.1  protein_id AT2G33845.1p  transcript_id AT2G33845.1  
At2g33847	chr2:014320380	0.0	C/14320380-14320522,14320168-14320294	AT2G33847.2  CDS  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.3); Has 52 Blast hits to 52 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G33847.2p  transcript_id AT2G33847.2  protein_id AT2G33847.2p  transcript_id AT2G33847.2  
At2g33847	chr2:014320380	0.0	C/14320380-14320522,14320176-14320294,14319280-14319299	AT2G33847.1  CDS  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.4); Has 55 Blast hits to 55 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G33847.1p  transcript_id AT2G33847.1  protein_id AT2G33847.1p  transcript_id AT2G33847.1  
At2g33850	chr2:014321221	0.0	C/14321221-14322024	AT2G33850.1  CDS  gene_syn T1B8.15, T1B8_15  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28400.1); Has 3112 Blast hits to 2067 proteins in 103 species: Archae - 2; Bacteria - 24; Metazoa - 211; Fungi - 93; Plants - 53; Viruses - 2; Other Eukaryotes - 2727 (source: NCBI BLink).  protein_id AT2G33850.1p  transcript_id AT2G33850.1  protein_id AT2G33850.1p  transcript_id AT2G33850.1  
At2g33855	chr2:014324717	0.0	C/14324717-14325151	AT2G33855.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 12 Blast hits to 12 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G33855.1p  transcript_id AT2G33855.1  protein_id AT2G33855.1p  transcript_id AT2G33855.1  
At2g33860	chr2:014328290	0.0	C/14328290-14328613,14327755-14327811,14327486-14327668,14327282-14327366,14327110-14327200,14326855-14327019,14326547-14326666,14326376-14326451,14326092-14326254,14325444-14326006	AT2G33860.1  CDS  gene_syn ARF3, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, ETT, ETTIN, T1B8.30, T1B8_30  gene ETT  function ettin (ett) mutations have pleiotropic effects on Arabidopsis flower development, causing increases in perianth organ number, decreases in stamen number and anther formation, and apical-basal patterning defects in the gynoecium. The ETTIN gene encodes a protein with homology to DNA binding proteins which bind to auxin response elements. ETT transcript is expressed throughout stage 1 floral meristems and subsequently resolves to a complex pattern within petal, stamen and carpel primordia. ETT probably functions to impart regional identity in floral meristems that affects perianth organ number spacing, stamen formation, and regional differentiation in stamens and the gynoecium. During stage 5, ETT expression appears in a ring at the top of the floral meristem before morphological appearance of the gynoecium, consistent with the proposal that ETT is involved in prepatterning apical and basal boundaries in the gynoecium primordium. It is a target of the ta-siRNA tasiR-ARF.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|9409666|TAS  go_process response to auxin stimulus|GO:0009733|9409666|ISS  go_process auxin metabolic process|GO:0009850|10476078|TAS  go_process vegetative phase change|GO:0010050|16682356|IMP  go_process vegetative phase change|GO:0010050|16818444|IGI  go_process abaxial cell fate specification|GO:0010158|16199616|IGI  go_function DNA binding|GO:0003677|9409666|ISS  go_function transcription factor activity|GO:0003700|10476078|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ETT (ETTIN); DNA binding / transcription factor  note ETTIN (ETT); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to auxin stimulus, vegetative phase change, abaxial cell fate specification, regulation of transcription, DNA-dependent, auxin metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: ARF4 (AUXIN RESPONSE FACTOR 4); transcription factor (TAIR:AT5G60450.1); Has 624 Blast hits to 615 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 615; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G33860.1p  transcript_id AT2G33860.1  protein_id AT2G33860.1p  transcript_id AT2G33860.1  
At2g33870	chr2:014338031	0.0	C/14338031-14338251,14337366-14337801	AT2G33870.1  CDS  gene_syn ArRABA1h, Arabidopsis Rab GTPase homolog A1h, T1B8.16, T1B8_16  gene ArRABA1h  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product ArRABA1h (Arabidopsis Rab GTPase homolog A1h); GTP binding  note Arabidopsis Rab GTPase homolog A1h (ArRABA1h); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: AtRABA1i (Arabidopsis Rab GTPase homolog A1i); GTP binding (TAIR:AT1G28550.1); Has 21371 Blast hits to 21339 proteins in 601 species: Archae - 13; Bacteria - 95; Metazoa - 11814; Fungi - 2768; Plants - 1821; Viruses - 19; Other Eukaryotes - 4841 (source: NCBI BLink).  protein_id AT2G33870.1p  transcript_id AT2G33870.1  protein_id AT2G33870.1p  transcript_id AT2G33870.1  
At2g33880	chr2:014343471	0.0	C/14343471-14343597,14342564-14343385,14342073-14342254,14341639-14341644	AT2G33880.1  CDS  gene_syn HB-3, STIMPY, STIP, T1B8.31, T1B8_31, WOX9, WUSCHEL-RELATED HOMEOBOX 9  gene HB-3  function Encodes a protein with similarity to WUS type homeodomain protein. Required for meristem growth and development and acts through positive regulation of WUS. Loss of function phenotypes include embryo lethality, hyponastic cotyledons, reduced root development and smaller meristems. Phenotypes can be rescued by addition of sucrose in the growth media.  go_component nucleus|GO:0005634|17706632|IDA  go_component cytoplasm|GO:0005737|17706632|IDA  go_process positive regulation of cell proliferation|GO:0008284|15753038|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|17706632|IMP  go_process regulation of meristem growth|GO:0010075|15753038|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product HB-3; transcription factor  note HB-3; FUNCTIONS IN: transcription factor activity; INVOLVED IN: embryonic development ending in seed dormancy, regulation of meristem growth, positive regulation of cell proliferation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WOX8 (WUSCHEL RELATED HOMEOBOX 8); DNA binding / transcription factor (TAIR:AT5G45980.1); Has 412 Blast hits to 378 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 17; Plants - 332; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT2G33880.1p  transcript_id AT2G33880.1  protein_id AT2G33880.1p  transcript_id AT2G33880.1  
At2g33890	chr2:014350386	0.0	W/14350386-14350457	AT2G33890.1  tRNA  gene_syn 170.TRNA-PRO-1, 6067.TRNA-PRO-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT2G33890.1  
At2g33900	chr2:014351359	0.0	W/14351359-14351430	AT2G33900.1  tRNA  gene_syn 170.TRNA-PRO-2, 6067.TRNA-PRO-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT2G33900.1  
At2g33910	chr2:014352191	0.0	W/14352191-14352262	AT2G33910.1  tRNA  gene_syn 170.TRNA-PRO-3, 6067.TRNA-PRO-3  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT2G33910.1  
At2g33920	chr2:014353143	0.0	W/14353143-14353214	AT2G33920.1  tRNA  gene_syn 170.TRNA-PRO-4, 6067.TRNA-PRO-4  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: AGG)  transcript_id AT2G33920.1  
At2g33930	chr2:014353656	0.0	W/14353656-14353727	AT2G33930.1  tRNA  gene_syn 170.TRNA-PRO-5, 6067.TRNA-PRO-5  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT2G33930.1  
At2g33940	chr2:014354098	0.0	W/14354098-14354169	AT2G33940.1  tRNA  gene_syn 170.TRNA-PRO-6, 6067.TRNA-PRO-6  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT2G33940.1  
At2g33950	chr2:014355137	0.0	W/14355137-14355208	AT2G33950.1  tRNA  gene_syn 170.TRNA-PRO-7, 6067.TRNA-PRO-7  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: CGG)  transcript_id AT2G33950.1  
At2g33960	chr2:014356055	0.0	W/14356055-14356126	AT2G33960.1  tRNA  gene_syn 170.TRNA-PRO-8, 6067.TRNA-PRO-8  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: AGG)  transcript_id AT2G33960.1  
At2g33970	chr2:014356521	0.0	W/14356521-14356592	AT2G33970.1  tRNA  gene_syn 170.TRNA-PRO-9, 6067.TRNA-PRO-9  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT2G33970.1  
At2g33980	chr2:014359525	0.0	C/14359525-14359840,14359195-14359337,14358662-14358781,14358374-14358571,14358180-14358270,14356786-14356826	AT2G33980.1  CDS  gene_syn Arabidopsis thaliana Nudix hydrolase homolog 22, T14G11.10, T14G11_10, atnudt22  gene atnudt22  go_function hydrolase activity|GO:0016787||IEA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product atnudt22 (Arabidopsis thaliana Nudix hydrolase homolog 22); hydrolase  note Arabidopsis thaliana Nudix hydrolase homolog 22 (atnudt22); FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), Nudix hydrolase, AtNUDT22 (InterPro:IPR017397), NUDIX hydrolase, core (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15); hydrolase (TAIR:AT1G28960.5); Has 2470 Blast hits to 2470 proteins in 785 species: Archae - 31; Bacteria - 1314; Metazoa - 139; Fungi - 111; Plants - 57; Viruses - 0; Other Eukaryotes - 818 (source: NCBI BLink).  protein_id AT2G33980.1p  transcript_id AT2G33980.1  protein_id AT2G33980.1p  transcript_id AT2G33980.1  
At2g33990	chr2:014361565	0.0	C/14361565-14361630,14361376-14361492,14361060-14361287,14360852-14360965,14360502-14360768	AT2G33990.1  CDS  gene_syn IQ-domain 9, T14G11.11, T14G11_11, iqd9  gene iqd9  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product iqd9 (IQ-domain 9); calmodulin binding  note IQ-domain 9 (iqd9); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQD10 (IQ-domain 10); calmodulin binding (TAIR:AT3G15050.1); Has 354 Blast hits to 353 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 348; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT2G33990.1p  transcript_id AT2G33990.1  protein_id AT2G33990.1p  transcript_id AT2G33990.1  
At2g34000	chr2:014365177	0.0	W/14365177-14365632	AT2G34000.1  CDS  gene_syn T14G11.12, T14G11_12  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger protein-related  note zinc finger protein-related; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: ATL6; protein binding / zinc ion binding (TAIR:AT3G05200.1); Has 3841 Blast hits to 3830 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 1308; Fungi - 166; Plants - 1909; Viruses - 32; Other Eukaryotes - 426 (source: NCBI BLink).  protein_id AT2G34000.1p  transcript_id AT2G34000.1  protein_id AT2G34000.1p  transcript_id AT2G34000.1  
At2g34010	chr2:014368869	0.0	W/14368869-14369243,14369343-14369462,14369562-14369650,14369738-14369876,14369954-14370133	AT2G34010.1  CDS  gene_syn T14G11.13, T14G11_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29010.1); Has 17 Blast hits to 16 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 11; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G34010.1p  transcript_id AT2G34010.1  protein_id AT2G34010.1p  transcript_id AT2G34010.1  
At2g34020	chr2:014373274	0.0	C/14373274-14373703,14372969-14373150,14372822-14372879,14372557-14372738,14372323-14372462,14371632-14372223,14371292-14371540	AT2G34020.1  CDS  gene_syn T14G11.14, T14G11_14  go_function calcium ion binding|GO:0005509||IEA  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium ion binding  note calcium ion binding; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT2G34030.1); Has 141 Blast hits to 129 proteins in 35 species: Archae - 0; Bacteria - 2; Metazoa - 27; Fungi - 2; Plants - 73; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT2G34020.1p  transcript_id AT2G34020.1  protein_id AT2G34020.1p  transcript_id AT2G34020.1  
At2g34030	chr2:014376971	0.0	C/14376971-14377364,14376752-14376900,14376623-14376665,14376363-14376544,14376143-14376282,14375814-14376060,14375418-14375714,14375086-14375334	AT2G34030.1  CDS  gene_syn T14G11.15, T14G11_15  go_component endomembrane system|GO:0012505||IEA  go_function calcium ion binding|GO:0005509||IEA  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium ion binding (TAIR:AT2G34020.1); Has 219 Blast hits to 211 proteins in 55 species: Archae - 2; Bacteria - 8; Metazoa - 80; Fungi - 14; Plants - 82; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT2G34030.1p  transcript_id AT2G34030.1  protein_id AT2G34030.1p  transcript_id AT2G34030.1  
At2g34040	chr2:014382157	0.0	C/14382157-14382246,14381856-14382017,14381662-14381761,14381512-14381577,14381324-14381415,14380758-14380832,14380510-14380659,14379910-14379975,14379750-14379815,14379339-14379449,14379093-14379182,14378899-14379005,14378571-14378724	AT2G34040.2  CDS  gene_syn T14G11.16, T14G11_16  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process anti-apoptosis|GO:0006916||ISS  product apoptosis inhibitory 5 (API5) family protein  note apoptosis inhibitory 5 (API5) family protein; FUNCTIONS IN: binding; INVOLVED IN: anti-apoptosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Apoptosis inhibitory 5 (InterPro:IPR008383), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: apoptosis inhibitory 5 (API5) family protein (TAIR:AT1G29030.1); Has 182 Blast hits to 173 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 4; Plants - 40; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT2G34040.2p  transcript_id AT2G34040.2  protein_id AT2G34040.2p  transcript_id AT2G34040.2  
At2g34040	chr2:014382157	0.0	C/14382157-14382246,14381856-14382017,14381662-14381761,14381512-14381577,14381324-14381415,14380758-14380832,14380510-14380659,14379910-14379975,14379750-14379815,14379339-14379449,14379093-14379182,14378899-14379005,14378610-14378724,14378456-14378521,14378247-14378347,14377957-14378161	AT2G34040.1  CDS  gene_syn T14G11.16, T14G11_16  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process anti-apoptosis|GO:0006916||ISS  product apoptosis inhibitory 5 (API5) family protein  note apoptosis inhibitory 5 (API5) family protein; FUNCTIONS IN: binding; INVOLVED IN: anti-apoptosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Apoptosis inhibitory 5 (InterPro:IPR008383), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: apoptosis inhibitory 5 (API5) family protein (TAIR:AT1G29030.1); Has 245 Blast hits to 233 proteins in 69 species: Archae - 0; Bacteria - 4; Metazoa - 145; Fungi - 14; Plants - 56; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT2G34040.1p  transcript_id AT2G34040.1  protein_id AT2G34040.1p  transcript_id AT2G34040.1  
At2g34050	chr2:014383896	0.0	C/14383896-14384198,14383730-14383809,14383585-14383643,14382843-14383147	AT2G34050.1  CDS  gene_syn T14G11.17, T14G11_17  go_component mitochondrion|GO:0005739||IEA  go_component chloroplast|GO:0009507||IEA  go_process protein complex assembly|GO:0006461||IEA  product unknown protein  note INVOLVED IN: protein complex assembly; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATP11 (InterPro:IPR010591); Has 224 Blast hits to 224 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 80; Plants - 18; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT2G34050.1p  transcript_id AT2G34050.1  protein_id AT2G34050.1p  transcript_id AT2G34050.1  
At2g34060	chr2:014384914	0.0	W/14384914-14385174,14385568-14385768,14385952-14386530	AT2G34060.1  CDS  gene_syn T14G11.18, T14G11_18  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT5G14130.1); Has 2882 Blast hits to 2868 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 74; Plants - 2764; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT2G34060.1p  transcript_id AT2G34060.1  protein_id AT2G34060.1p  transcript_id AT2G34060.1  
At2g34070	chr2:014389805	0.0	C/14389805-14390160,14389548-14389719,14388282-14388463,14388014-14388172,14387631-14387919	AT2G34070.1  CDS  gene_syn T14G11.19, T14G11_19  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29050.1); Has 708 Blast hits to 697 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 708; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G34070.1p  transcript_id AT2G34070.1  protein_id AT2G34070.1p  transcript_id AT2G34070.1  
At2g34080	chr2:014394324	0.0	C/14394324-14394777,14393431-14394014	AT2G34080.1  CDS  gene_syn T14G11.20, T14G11_20  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product cysteine proteinase, putative  note cysteine proteinase, putative; FUNCTIONS IN: cysteine-type peptidase activity, cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: peptidase C1A papain family protein (TAIR:AT1G29090.1); Has 6140 Blast hits to 6097 proteins in 579 species: Archae - 29; Bacteria - 98; Metazoa - 2848; Fungi - 4; Plants - 1222; Viruses - 120; Other Eukaryotes - 1819 (source: NCBI BLink).  protein_id AT2G34080.1p  transcript_id AT2G34080.1  protein_id AT2G34080.1p  transcript_id AT2G34080.1  
At2g34090	chr2:014398996	0.0	C/14398996-14399170,14398655-14398771,14398413-14398545,14398189-14398285,14398004-14398047,14397760-14397916,14397460-14397531,14397234-14397317,14396961-14397062,14396825-14396872,14396631-14396756,14396283-14396543	AT2G34090.2  CDS  gene_syn MEE18, T14G11.21, T14G11_21, maternal effect embryo arrest 18  gene MEE18  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process pollen tube development|GO:0048868|19237690|IMP  go_function molecular_function|GO:0003674||ND  product MEE18 (maternal effect embryo arrest 18)  note maternal effect embryo arrest 18 (MEE18); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy, pollen tube development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 (InterPro:IPR002882); Has 1116 Blast hits to 1025 proteins in 425 species: Archae - 0; Bacteria - 787; Metazoa - 0; Fungi - 101; Plants - 21; Viruses - 1; Other Eukaryotes - 206 (source: NCBI BLink).  protein_id AT2G34090.2p  transcript_id AT2G34090.2  protein_id AT2G34090.2p  transcript_id AT2G34090.2  
At2g34090	chr2:014398996	0.0	C/14398996-14399170,14398655-14398771,14398413-14398545,14398189-14398285,14398004-14398047,14397760-14397916,14397460-14397531,14397234-14397317,14396961-14397062,14396825-14396872,14396631-14396756,14396451-14396543,14396283-14396372	AT2G34090.1  CDS  gene_syn MEE18, T14G11.21, T14G11_21, maternal effect embryo arrest 18  gene MEE18  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process pollen tube development|GO:0048868|19237690|IMP  go_function molecular_function|GO:0003674||ND  product MEE18 (maternal effect embryo arrest 18)  note maternal effect embryo arrest 18 (MEE18); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy, pollen tube development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 (InterPro:IPR002882); Has 1115 Blast hits to 1026 proteins in 425 species: Archae - 0; Bacteria - 785; Metazoa - 0; Fungi - 101; Plants - 21; Viruses - 1; Other Eukaryotes - 207 (source: NCBI BLink).  protein_id AT2G34090.1p  transcript_id AT2G34090.1  protein_id AT2G34090.1p  transcript_id AT2G34090.1  
At2g34100	chr2:014401566	0.0	C/14401566-14401655,14400803-14401055,14400563-14400675,14400143-14400415,14399705-14400013	AT2G34100.1  CDS  gene_syn T14G11.22, T14G11_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 9873 Blast hits to 4295 proteins in 319 species: Archae - 27; Bacteria - 4639; Metazoa - 1730; Fungi - 903; Plants - 251; Viruses - 102; Other Eukaryotes - 2221 (source: NCBI BLink).  protein_id AT2G34100.1p  transcript_id AT2G34100.1  protein_id AT2G34100.1p  transcript_id AT2G34100.1  
At2g34100	chr2:014401566	0.0	C/14401566-14401655,14400803-14401055,14400563-14400675,14400143-14400415,14399705-14400013	AT2G34100.2  CDS  gene_syn T14G11.22, T14G11_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: petal differentiation and expansion stage.  protein_id AT2G34100.2p  transcript_id AT2G34100.2  protein_id AT2G34100.2p  transcript_id AT2G34100.2  
At2g34110	chr2:014402500	0.0	W/14402500-14402733,14403180-14403317	AT2G34110.1  CDS  gene_syn T14G11.23, T14G11_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: forkhead-associated domain-containing protein / FHA domain-containing protein (TAIR:AT1G34355.1); Has 12 Blast hits to 12 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G34110.1p  transcript_id AT2G34110.1  protein_id AT2G34110.1p  transcript_id AT2G34110.1  
At2g34120	chr2:014405339	0.0	W/14405339-14405551	AT2G34120.1  CDS  gene_syn T14G11.24, T14G11_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G34120.1p  transcript_id AT2G34120.1  protein_id AT2G34120.1p  transcript_id AT2G34120.1  
At2g34123	chr2:014406240	0.0	W/14406240-14406306,14406564-14406742	AT2G34123.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G03936.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G34123.1p  transcript_id AT2G34123.1  protein_id AT2G34123.1p  transcript_id AT2G34123.1  
At2g34130	chr2:014409489	0.0	W/14409489-14412365	AT2G34130.1  mRNA_TE_gene  pseudo  gene_syn MEE19, T14G11.25, T14G11_25, maternal effect embryo arrest 19  gene MEE19  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 5.8e-123 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At2g34135	chr2:014412728	0.0	W/14412728-14412865	AT2G34135.1  pseudogenic_transcript  pseudo  function Encodes a Defensin-like (DEFL) family protein [pseudogene]  
At2g34140	chr2:014414188	0.0	C/14414188-14414700	AT2G34140.1  CDS  gene_syn T14G11.26, T14G11_26  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product Dof-type zinc finger domain-containing protein  note Dof-type zinc finger domain-containing protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, flower, root, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT1G29160.1); Has 618 Blast hits to 614 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 613; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT2G34140.1p  transcript_id AT2G34140.1  protein_id AT2G34140.1p  transcript_id AT2G34140.1  
At2g34150	chr2:014422282	0.0	C/14422282-14422361,14422078-14422174,14421919-14421986,14420244-14421840,14420061-14420156,14419587-14419691,14419432-14419491	AT2G34150.1  CDS  gene_syn ATRANGAP2, ATSCAR1, SCAR1, T14G11.27, T14G11_27, WAVE1, WISKOTT-ALDRICH SYNDROME PROTEIN FAMILY VERPROLIN HOMOLOGOUS PROTEIN 1  gene WAVE1  function Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.  go_component SCAR complex|GO:0031209|18424615|TAS  go_process positive regulation of actin nucleation|GO:0051127|18424615|IMP  go_function actin monomer binding|GO:0003785|15296761|IDA  product WAVE1; actin monomer binding  note SCAR1; FUNCTIONS IN: actin monomer binding; INVOLVED IN: positive regulation of actin nucleation; LOCATED IN: SCAR complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: WAVE2 (TAIR:AT1G29170.3); Has 2201 Blast hits to 1060 proteins in 155 species: Archae - 0; Bacteria - 838; Metazoa - 521; Fungi - 200; Plants - 129; Viruses - 2; Other Eukaryotes - 511 (source: NCBI BLink).  protein_id AT2G34150.1p  transcript_id AT2G34150.1  protein_id AT2G34150.1p  transcript_id AT2G34150.1  
At2g34150	chr2:014423105	0.0	C/14423105-14423259,14422698-14422861,14422282-14422405,14422078-14422174,14421919-14421986,14420244-14421840,14420061-14420156,14419587-14419691,14419432-14419491	AT2G34150.2  CDS  gene_syn ATRANGAP2, ATSCAR1, SCAR1, T14G11.27, T14G11_27, WAVE1, WISKOTT-ALDRICH SYNDROME PROTEIN FAMILY VERPROLIN HOMOLOGOUS PROTEIN 1  gene WAVE1  function Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.  go_component SCAR complex|GO:0031209|18424615|TAS  go_process positive regulation of actin nucleation|GO:0051127|18424615|IMP  go_function actin monomer binding|GO:0003785|15296761|IDA  product WAVE1; actin monomer binding  note WAVE1; FUNCTIONS IN: actin monomer binding; INVOLVED IN: positive regulation of actin nucleation; LOCATED IN: SCAR complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: WAVE2 (TAIR:AT1G29170.3); Has 2368 Blast hits to 1224 proteins in 163 species: Archae - 0; Bacteria - 838; Metazoa - 667; Fungi - 205; Plants - 133; Viruses - 2; Other Eukaryotes - 523 (source: NCBI BLink).  protein_id AT2G34150.2p  transcript_id AT2G34150.2  protein_id AT2G34150.2p  transcript_id AT2G34150.2  
At2g34160	chr2:014426283	0.0	W/14426283-14426402,14426673-14426721,14426822-14426884,14426974-14427038,14427125-14427220	AT2G34160.1  CDS  gene_syn T14G11.28, T14G11_28  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alba, DNA/RNA-binding protein (InterPro:IPR002775), Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related (InterPro:IPR014560); BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT1G29250.1); Has 88 Blast hits to 88 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT2G34160.1p  transcript_id AT2G34160.1  protein_id AT2G34160.1p  transcript_id AT2G34160.1  
At2g34170	chr2:014428298	0.0	W/14428298-14429059,14429152-14429922,14430013-14430051	AT2G34170.1  CDS  gene_syn T14G11.29, T14G11_29  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29240.1); Has 163 Blast hits to 143 proteins in 42 species: Archae - 0; Bacteria - 11; Metazoa - 83; Fungi - 10; Plants - 36; Viruses - 2; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT2G34170.1p  transcript_id AT2G34170.1  protein_id AT2G34170.1p  transcript_id AT2G34170.1  
At2g34170	chr2:014428298	0.0	W/14428298-14429059,14429152-14429922,14430013-14430051	AT2G34170.2  CDS  gene_syn T14G11.29, T14G11_29  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29240.1).  protein_id AT2G34170.2p  transcript_id AT2G34170.2  protein_id AT2G34170.2p  transcript_id AT2G34170.2  
At2g34180	chr2:014430761	0.0	C/14430761-14432269	AT2G34180.1  CDS  gene_syn ATWL2, CBL-INTERACTING PROTEIN KINASE 13, CIPK13, F13P17.2, F13P17_2, SNF1-RELATED PROTEIN KINASE 3.7, SnRK3.7, WL2, WPL4-LIKE 2  gene CIPK13  function Encodes CBL-interacting protein kinase 13 (CIPK13).  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product CIPK13 (CBL-INTERACTING PROTEIN KINASE 13); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note CBL-INTERACTING PROTEIN KINASE 13 (CIPK13); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: signal transduction, protein amino acid phosphorylation; EXPRESSED IN: root, pollen tube; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CIPK18 (CBL-INTERACTING PROTEIN KINASE 18); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT1G29230.1); Has 94683 Blast hits to 93119 proteins in 3110 species: Archae - 76; Bacteria - 8454; Metazoa - 40946; Fungi - 8500; Plants - 18147; Viruses - 474; Other Eukaryotes - 18086 (source: NCBI BLink).  protein_id AT2G34180.1p  transcript_id AT2G34180.1  protein_id AT2G34180.1p  transcript_id AT2G34180.1  
At2g34185	chr2:014434402	0.0	W/14434402-14434555,14435036-14435147,14435233-14435302	AT2G34185.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G34185.1p  transcript_id AT2G34185.1  protein_id AT2G34185.1p  transcript_id AT2G34185.1  
At2g34186	chr2:014435854	0.0	C/14435854-14435949	AT2G34186.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G34186.1p  transcript_id AT2G34186.1  protein_id AT2G34186.1p  transcript_id AT2G34186.1  
At2g34190	chr2:014437065	0.0	W/14437065-14437155,14437237-14437334,14437444-14437620,14437696-14437796,14437870-14437945,14438029-14438088,14438176-14438360,14438453-14438549,14438627-14438772,14438864-14439407	AT2G34190.1  CDS  gene_syn F13P17.3, F13P17_3  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_function transmembrane transporter activity|GO:0022857||ISS  product xanthine/uracil permease family protein  note xanthine/uracil permease family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Xanthine/uracil permease (InterPro:IPR006042), Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: xanthine/uracil permease family protein (TAIR:AT2G05760.1); Has 4705 Blast hits to 4685 proteins in 930 species: Archae - 37; Bacteria - 3266; Metazoa - 310; Fungi - 84; Plants - 292; Viruses - 1; Other Eukaryotes - 715 (source: NCBI BLink).  protein_id AT2G34190.1p  transcript_id AT2G34190.1  protein_id AT2G34190.1p  transcript_id AT2G34190.1  
At2g34200	chr2:014441105	0.0	W/14441105-14441568,14441678-14441882	AT2G34200.1  CDS  gene_syn F13P17.4, F13P17_4  go_component membrane|GO:0016020|17432890|IDA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G05830.1); Has 286 Blast hits to 286 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 96; Fungi - 0; Plants - 187; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G34200.1p  transcript_id AT2G34200.1  protein_id AT2G34200.1p  transcript_id AT2G34200.1  
At2g34202	chr2:014442978	0.0	C/14442978-14443077	AT2G34202.1  miRNA  gene_syn MICRORNA399D, MIR399D  gene MIR399D  function Encodes a phosphate starvation-responsive microRNA that targets PHO2, an E2-UBC that negatively affects shoot phosphate content. miR399 can be negatively regulated by members of the non-coding gene families IPS1 and At4. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGCCAAAGGAGAUUUGCCCCG  go_process cellular response to phosphate starvation|GO:0016036|16679424|IEP  go_process gene silencing by miRNA|GO:0035195|16679424|IEP  product MIR399D (MICRORNA399D); miRNA  transcript_id AT2G34202.1  
At2g34204	chr2:014443504	0.0	W/14443504-14443612	AT2G34204.1  miRNA  gene_syn MICRORNA399E, MIR399E  gene MIR399E  function Encodes a phosphate starvation-responsive microRNA that targets PHO2, an E2-UBC that negatively affects shoot phosphate content. miR399 can be negatively regulated by members of the non-coding gene families IPS1 and At4. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGCCAAAGGAGAUUUGCCUCG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR399E (MICRORNA399E); miRNA  transcript_id AT2G34204.1  
At2g34208	chr2:014444997	0.0	W/14444997-14445114	AT2G34208.1  miRNA  gene_syn MICRORNA399F, MIR399, MIR399F  gene MIR399F  function Encodes a phosphate starvation-responsive microRNA that targets PHO2, an E2-UBC that negatively affects shoot phosphate content. miR399 can be negatively regulated by members of the non-coding gene families IPS1 and At4. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGCCAAAGGAGAUUUGCCCGG  go_component cellular_component|GO:0005575||ND  go_process cellular response to phosphate starvation|GO:0016036|16303564|IEP  go_process cellular response to phosphate starvation|GO:0016036|16387831|IEP  go_process cellular phosphate ion homeostasis|GO:0030643|16387831|IMP  go_process gene silencing by miRNA|GO:0035195|16303564|IMP  go_process gene silencing by miRNA|GO:0035195|16387831|IMP  go_function molecular_function|GO:0003674||ND  product MIR399F (MICRORNA399F); miRNA  transcript_id AT2G34208.1  
At2g34210	chr2:014445938	0.0	W/14445938-14446226,14446323-14446564,14446645-14446791,14446877-14447038,14447113-14447196,14447286-14447356,14447455-14447812,14447902-14448057,14448138-14448235,14448312-14448360,14448454-14448606,14448699-14448888,14449035-14449202,14449284-14449418,14449519-14449597,14449690-14449823,14449901-14450011,14450078-14450175,14450277-14450522	AT2G34210.1  CDS  gene_syn F13P17.5, F13P17_5  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process regulation of transcription from RNA polymerase II promoter|GO:0006357||IEA  go_process translation|GO:0006412||IEA  go_process positive regulation of RNA elongation from RNA polymerase II promoter|GO:0032968||IEA  go_function transcription elongation regulator activity|GO:0003711||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_function transcription initiation factor activity|GO:0016986||ISS  product structural constituent of ribosome / transcription elongation regulator/ transcription initiation factor  note structural constituent of ribosome / transcription elongation regulator/ transcription initiation factor; FUNCTIONS IN: transcription elongation regulator activity, structural constituent of ribosome, transcription initiation factor activity; INVOLVED IN: regulation of transcription from RNA polymerase II promoter, translation, positive regulation of RNA elongation from RNA polymerase II promoter; LOCATED IN: ribosome, intracellular; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Transcription antitermination protein, NusG, N-terminal (InterPro:IPR006645), Transcription elongation factor Spt5 (InterPro:IPR017071), KOW (InterPro:IPR005824), Ribosomal protein L24/L26, conserved site (InterPro:IPR005825), Supt5 repeat (InterPro:IPR005100); BEST Arabidopsis thaliana protein match is: GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2); structural constituent of ribosome / transcription elongation regulator/ transcription factor (TAIR:AT4G08350.1); Has 587 Blast hits to 554 proteins in 188 species: Archae - 48; Bacteria - 6; Metazoa - 225; Fungi - 114; Plants - 48; Viruses - 1; Other Eukaryotes - 145 (source: NCBI BLink).  protein_id AT2G34210.1p  transcript_id AT2G34210.1  protein_id AT2G34210.1p  transcript_id AT2G34210.1  
At2g34220	chr2:014451060	0.0	W/14451060-14451099,14451194-14453196,14453282-14453410,14453486-14453575	AT2G34220.1  CDS  gene_syn F13P17.6, F13P17_6, MEE20, maternal effect embryo arrest 20  gene MEE20  go_component nucleus|GO:0005634|14617066|IDA  go_process pollen development|GO:0009555|19237690|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function molecular_function|GO:0003674||ND  product MEE20 (maternal effect embryo arrest 20)  note maternal effect embryo arrest 20 (MEE20); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy, pollen development; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34230.1); Has 44 Blast hits to 44 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G34220.1p  transcript_id AT2G34220.1  protein_id AT2G34220.1p  transcript_id AT2G34220.1  
At2g34224	chr2:014454088	0.0	C/14454088-14454258	AT2G34224.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G34224.1p  transcript_id AT2G34224.1  protein_id AT2G34224.1p  transcript_id AT2G34224.1  
At2g34230	chr2:014454639	0.0	W/14454639-14456585,14456680-14456808,14456895-14456969	AT2G34230.1  CDS  gene_syn F13P17.7, F13P17_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: MEE20 (maternal effect embryo arrest 20) (TAIR:AT2G34220.1); Has 46 Blast hits to 46 proteins in 5 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G34230.1p  transcript_id AT2G34230.1  protein_id AT2G34230.1p  transcript_id AT2G34230.1  
At2g34230	chr2:014454639	0.0	W/14454639-14456651	AT2G34230.2  CDS  gene_syn F13P17.7, F13P17_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: MEE20 (maternal effect embryo arrest 20) (TAIR:AT2G34220.1); Has 45 Blast hits to 45 proteins in 4 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G34230.2p  transcript_id AT2G34230.2  protein_id AT2G34230.2p  transcript_id AT2G34230.2  
At2g34238	chr2:014458821	0.0	W/14458821-14458979	AT2G34238.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G34238.1p  transcript_id AT2G34238.1  protein_id AT2G34238.1p  transcript_id AT2G34238.1  
At2g34240	chr2:014459157	0.0	W/14459157-14460695,14460758-14461102,14461199-14461324,14461416-14461469	AT2G34240.1  CDS  gene_syn F13P17.8, F13P17_8  product unknown protein  note CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: MEE20 (maternal effect embryo arrest 20) (TAIR:AT2G34220.1).  protein_id AT2G34240.1p  transcript_id AT2G34240.1  protein_id AT2G34240.1p  transcript_id AT2G34240.1  
At2g34250	chr2:014462635	0.0	W/14462635-14462978,14463136-14463363,14463450-14463804,14463891-14464015,14464112-14464247,14464333-14464572	AT2G34250.1  CDS  gene_syn F13P17.9, F13P17_9  go_component membrane|GO:0016020||IEA  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||IEA  go_component membrane|GO:0016020||ISS  go_process protein secretion|GO:0009306||ISS  go_process response to salt stress|GO:0009651|11351099|IEP  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product protein transport protein sec61, putative  note protein transport protein sec61, putative; FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: response to salt stress, protein secretion; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SecY protein (InterPro:IPR002208); BEST Arabidopsis thaliana protein match is: P-P-bond-hydrolysis-driven protein transmembrane transporter (TAIR:AT1G29310.1); Has 2776 Blast hits to 2770 proteins in 1213 species: Archae - 193; Bacteria - 1633; Metazoa - 225; Fungi - 153; Plants - 68; Viruses - 0; Other Eukaryotes - 504 (source: NCBI BLink).  protein_id AT2G34250.1p  transcript_id AT2G34250.1  protein_id AT2G34250.1p  transcript_id AT2G34250.1  
At2g34250	chr2:014462635	0.0	W/14462635-14462978,14463136-14463363,14463450-14463804,14463891-14464015,14464112-14464247,14464333-14464572	AT2G34250.2  CDS  gene_syn F13P17.9, F13P17_9  go_component membrane|GO:0016020||IEA  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||IEA  go_component membrane|GO:0016020||ISS  go_process protein secretion|GO:0009306||ISS  go_process response to salt stress|GO:0009651|11351099|IEP  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product protein transport protein sec61, putative  note protein transport protein sec61, putative; FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: response to salt stress, protein secretion; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SecY protein (InterPro:IPR002208); BEST Arabidopsis thaliana protein match is: P-P-bond-hydrolysis-driven protein transmembrane transporter (TAIR:AT1G29310.1); Has 2776 Blast hits to 2770 proteins in 1213 species: Archae - 193; Bacteria - 1633; Metazoa - 225; Fungi - 153; Plants - 68; Viruses - 0; Other Eukaryotes - 504 (source: NCBI BLink).  protein_id AT2G34250.2p  transcript_id AT2G34250.2  protein_id AT2G34250.2p  transcript_id AT2G34250.2  
At2g34260	chr2:014465899	0.0	W/14465899-14465993,14466095-14466127,14466213-14466277,14466359-14466446,14466544-14466616,14466892-14466998,14467105-14467204,14467354-14467430,14467533-14467581,14467673-14467719,14467810-14467880,14467989-14468044,14468116-14468245,14468346-14468416	AT2G34260.1  CDS  gene_syn F13P17.10, F13P17_10  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD repeat protein 55 (InterPro:IPR017422); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT2G43770.1); Has 16318 Blast hits to 9709 proteins in 465 species: Archae - 44; Bacteria - 3325; Metazoa - 6190; Fungi - 3093; Plants - 1110; Viruses - 0; Other Eukaryotes - 2556 (source: NCBI BLink).  protein_id AT2G34260.1p  transcript_id AT2G34260.1  protein_id AT2G34260.1p  transcript_id AT2G34260.1  
At2g34260	chr2:014466337	0.0	W/14466337-14466446,14466544-14466616,14466892-14466998,14467105-14467204,14467354-14467430,14467533-14467581,14467673-14467719,14467810-14467880,14467989-14468044,14468116-14468245,14468346-14468416	AT2G34260.2  CDS  gene_syn F13P17.10, F13P17_10  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G49660.1); Has 9260 Blast hits to 5860 proteins in 390 species: Archae - 18; Bacteria - 2392; Metazoa - 2996; Fungi - 1763; Plants - 489; Viruses - 0; Other Eukaryotes - 1602 (source: NCBI BLink).  protein_id AT2G34260.2p  transcript_id AT2G34260.2  protein_id AT2G34260.2p  transcript_id AT2G34260.2  
At2g34270	chr2:014468752	0.0	C/14468752-14469876	AT2G34270.1  CDS  gene_syn F13P17.11, F13P17_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G34270.1p  transcript_id AT2G34270.1  protein_id AT2G34270.1p  transcript_id AT2G34270.1  
At2g34280	chr2:014470335	0.0	C/14470335-14471510	AT2G34280.1  CDS  gene_syn F13P17.12, F13P17_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product S locus F-box-related / SLF-related  note S locus F-box-related / SLF-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01640.1); Has 506 Blast hits to 496 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 504; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G34280.1p  transcript_id AT2G34280.1  protein_id AT2G34280.1p  transcript_id AT2G34280.1  
At2g34290	chr2:014472633	0.0	C/14472633-14473430	AT2G34290.1  CDS  gene_syn F13P17.13, F13P17_13  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G27790.1); Has 79671 Blast hits to 78954 proteins in 2151 species: Archae - 74; Bacteria - 6568; Metazoa - 34628; Fungi - 7718; Plants - 15011; Viruses - 449; Other Eukaryotes - 15223 (source: NCBI BLink).  protein_id AT2G34290.1p  transcript_id AT2G34290.1  protein_id AT2G34290.1p  transcript_id AT2G34290.1  
At2g34300	chr2:014475900	0.0	C/14475900-14476811,14475605-14475754,14475259-14475529,14475062-14475172,14474788-14474962,14474244-14474708,14473916-14474144	AT2G34300.1  CDS  gene_syn F13P17.14, F13P17_14  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  product dehydration-responsive protein-related  note dehydration-responsive protein-related; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive protein-related (TAIR:AT1G29470.2); Has 50472 Blast hits to 20394 proteins in 1052 species: Archae - 116; Bacteria - 12367; Metazoa - 15127; Fungi - 3734; Plants - 1934; Viruses - 540; Other Eukaryotes - 16654 (source: NCBI BLink).  protein_id AT2G34300.1p  transcript_id AT2G34300.1  protein_id AT2G34300.1p  transcript_id AT2G34300.1  
At2g34300	chr2:014475900	0.0	C/14475900-14476811,14475605-14475754,14475259-14475529,14475062-14475172,14474788-14474962,14474244-14474708,14473916-14474144	AT2G34300.2  CDS  gene_syn F13P17.14, F13P17_14  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  product dehydration-responsive protein-related  note dehydration-responsive protein-related; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive protein-related (TAIR:AT1G29470.2); Has 50472 Blast hits to 20394 proteins in 1052 species: Archae - 116; Bacteria - 12367; Metazoa - 15127; Fungi - 3734; Plants - 1934; Viruses - 540; Other Eukaryotes - 16654 (source: NCBI BLink).  protein_id AT2G34300.2p  transcript_id AT2G34300.2  protein_id AT2G34300.2p  transcript_id AT2G34300.2  
At2g34310	chr2:014479713	0.0	C/14479713-14479812,14478735-14479273,14478564-14478653	AT2G34310.1  CDS  gene_syn F13P17.27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29530.1); Has 197 Blast hits to 182 proteins in 55 species: Archae - 0; Bacteria - 6; Metazoa - 64; Fungi - 44; Plants - 38; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT2G34310.1p  transcript_id AT2G34310.1  protein_id AT2G34310.1p  transcript_id AT2G34310.1  
At2g34310	chr2:014479713	0.0	C/14479713-14479812,14478735-14479273,14478564-14478653	AT2G34310.2  CDS  gene_syn F13P17.27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29530.1); Has 197 Blast hits to 182 proteins in 55 species: Archae - 0; Bacteria - 6; Metazoa - 64; Fungi - 44; Plants - 38; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT2G34310.2p  transcript_id AT2G34310.2  protein_id AT2G34310.2p  transcript_id AT2G34310.2  
At2g34310	chr2:014479713	0.0	C/14479713-14479812,14478735-14479273,14478564-14478653	AT2G34310.3  CDS  gene_syn F13P17.27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29530.1); Has 197 Blast hits to 182 proteins in 55 species: Archae - 0; Bacteria - 6; Metazoa - 64; Fungi - 44; Plants - 38; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT2G34310.3p  transcript_id AT2G34310.3  protein_id AT2G34310.3p  transcript_id AT2G34310.3  
At2g34315	chr2:014482904	0.0	C/14482904-14483056,14482363-14482449,14481054-14481200,14480572-14480703,14480254-14480475	AT2G34315.1  CDS  go_function GTP binding|GO:0005525||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product disease resistance protein-related  note disease resistance protein-related; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, root, stamen; EXPRESSED DURING: 4 anthesis, D bilateral stage; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703); Has 77 Blast hits to 66 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 2; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G34315.1p  transcript_id AT2G34315.1  protein_id AT2G34315.1p  transcript_id AT2G34315.1  
At2g34320	chr2:014484959	0.0	W/14484959-14485837	AT2G34320.1  CDS  gene_syn F13P17.16, F13P17_16  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: reverse transcriptase, putative / RNA-dependent DNA polymerase, putative (TAIR:AT4G29090.1); Has 362 Blast hits to 362 proteins in 21 species: Archae - 8; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 351; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G34320.1p  transcript_id AT2G34320.1  protein_id AT2G34320.1p  transcript_id AT2G34320.1  
At2g34330	chr2:014486627	0.0	W/14486627-14487058	AT2G34330.1  CDS  gene_syn F13P17.17, F13P17_17  product unknown protein  note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29540.1); Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G34330.1p  transcript_id AT2G34330.1  protein_id AT2G34330.1p  transcript_id AT2G34330.1  
At2g34340	chr2:014489032	0.0	C/14489032-14489442	AT2G34340.1  CDS  gene_syn F13P17.18, F13P17_18  go_component cellular_component|GO:0005575||ND  go_process response to gibberellin stimulus|GO:0009739|17933900|IEP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to gibberellin stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF584 (InterPro:IPR007608); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29640.1); Has 204 Blast hits to 204 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 204; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G34340.1p  transcript_id AT2G34340.1  protein_id AT2G34340.1p  transcript_id AT2G34340.1  
At2g34350	chr2:014493624	0.0	W/14493624-14494088,14494380-14494803,14494956-14495644	AT2G34350.1  CDS  gene_syn F13P17.19, F13P17_19  go_component endomembrane system|GO:0012505||IEA  product nodulin-related  note nodulin-related; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nodulin-related (TAIR:AT2G34355.1); Has 1436 Blast hits to 1414 proteins in 399 species: Archae - 12; Bacteria - 648; Metazoa - 7; Fungi - 183; Plants - 319; Viruses - 0; Other Eukaryotes - 267 (source: NCBI BLink).  protein_id AT2G34350.1p  transcript_id AT2G34350.1  protein_id AT2G34350.1p  transcript_id AT2G34350.1  
At2g34355	chr2:014496376	0.0	W/14496376-14496828,14497091-14497520,14497623-14498311	AT2G34355.1  CDS  go_component endomembrane system|GO:0012505||IEA  product nodulin-related  note nodulin-related; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nodulin-related (TAIR:AT2G34350.1); Has 1509 Blast hits to 1479 proteins in 401 species: Archae - 11; Bacteria - 639; Metazoa - 10; Fungi - 188; Plants - 318; Viruses - 0; Other Eukaryotes - 343 (source: NCBI BLink).  protein_id AT2G34355.1p  transcript_id AT2G34355.1  protein_id AT2G34355.1p  transcript_id AT2G34355.1  
At2g34357	chr2:014499236	0.0	W/14499236-14499757,14499832-14500351,14500471-14500728,14500825-14500916,14501460-14501669,14501752-14502153,14502339-14502514,14502585-14502678,14502778-14502834,14503115-14503243,14503412-14503480,14503556-14503669,14503758-14503919,14504025-14504153,14504390-14504491,14504577-14504656,14504741-14504881,14504970-14505555	AT2G34357.1  CDS  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), Region of unknown function, NUC173 (InterPro:IPR012978); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT4G23540.1); Has 2560 Blast hits to 2014 proteins in 236 species: Archae - 0; Bacteria - 286; Metazoa - 947; Fungi - 385; Plants - 230; Viruses - 11; Other Eukaryotes - 701 (source: NCBI BLink).  protein_id AT2G34357.1p  transcript_id AT2G34357.1  protein_id AT2G34357.1p  transcript_id AT2G34357.1  
At2g34360	chr2:014507294	0.0	W/14507294-14507539,14508212-14508756,14508984-14509066,14509183-14509225,14509318-14509556,14509714-14509832,14509934-14510020,14510151-14510231	AT2G34360.1  CDS  gene_syn F13P17.20, F13P17_20  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product antiporter/ drug transporter/ transporter  note antiporter/ drug transporter/ transporter; FUNCTIONS IN: antiporter activity, drug transporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; EXPRESSED IN: stem, inflorescence meristem; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux protein-related (TAIR:AT5G52450.1); Has 5615 Blast hits to 5572 proteins in 1079 species: Archae - 143; Bacteria - 3591; Metazoa - 127; Fungi - 210; Plants - 686; Viruses - 0; Other Eukaryotes - 858 (source: NCBI BLink).  protein_id AT2G34360.1p  transcript_id AT2G34360.1  protein_id AT2G34360.1p  transcript_id AT2G34360.1  
At2g34370	chr2:014510482	0.0	W/14510482-14511891	AT2G34370.1  CDS  gene_syn F13P17.21, F13P17_21  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G29710.1); Has 7542 Blast hits to 3629 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 18; Plants - 7472; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT2G34370.1p  transcript_id AT2G34370.1  protein_id AT2G34370.1p  transcript_id AT2G34370.1  
At2g34380	chr2:014512777	0.0	W/14512777-14514306	AT2G34380.1  CDS  gene_syn F13P17.31  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Adipose-regulatory protein, Seipin (InterPro:IPR009617); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29760.1); Has 168 Blast hits to 163 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 120; Fungi - 17; Plants - 29; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G34380.1p  transcript_id AT2G34380.1  protein_id AT2G34380.1p  transcript_id AT2G34380.1  
At2g34390	chr2:014515647	0.0	C/14515647-14515793,14515079-14515519,14514937-14514998,14514617-14514833	AT2G34390.1  CDS  gene_syn F13P17.30, NIP2;1, NLM4, NOD26-LIKE INTRINSIC PROTEIN 2;1, NOD26-LIKE MIP 4  gene NIP2;1  function aquaporin NIP2.1  go_component endoplasmic reticulum|GO:0005783|16954136|IDA  go_component plasma membrane|GO:0005886|17584741|IDA  go_component membrane|GO:0016020||ISS  go_process response to hypoxia|GO:0001666|17584741|IEP  go_process transport|GO:0006810||ISS  go_process lactate transport|GO:0015727|17584741|IDA  go_function lactate transmembrane transporter activity|GO:0015129|17584741|IDA  go_function water channel activity|GO:0015250||ISS  product NIP2;1 (NOD26-LIKE INTRINSIC PROTEIN 2;1); lactate transmembrane transporter/ water channel  note NOD26-LIKE INTRINSIC PROTEIN 2;1 (NIP2;1); FUNCTIONS IN: water channel activity, lactate transmembrane transporter activity; INVOLVED IN: lactate transport, transport, response to hypoxia; LOCATED IN: endoplasmic reticulum, plasma membrane, membrane; EXPRESSED IN: flower, root, leaf; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: NLM1; arsenite transmembrane transporter/ water channel (TAIR:AT4G19030.1); Has 6582 Blast hits to 6563 proteins in 1244 species: Archae - 57; Bacteria - 2648; Metazoa - 1152; Fungi - 259; Plants - 1373; Viruses - 4; Other Eukaryotes - 1089 (source: NCBI BLink).  protein_id AT2G34390.1p  transcript_id AT2G34390.1  protein_id AT2G34390.1p  transcript_id AT2G34390.1  
At2g34400	chr2:014516238	0.0	W/14516238-14517148,14517244-14518186	AT2G34400.1  CDS  gene_syn F13P17.24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22410.1); Has 14623 Blast hits to 5296 proteins in 169 species: Archae - 0; Bacteria - 4; Metazoa - 195; Fungi - 114; Plants - 13938; Viruses - 0; Other Eukaryotes - 372 (source: NCBI BLink).  protein_id AT2G34400.1p  transcript_id AT2G34400.1  protein_id AT2G34400.1p  transcript_id AT2G34400.1  
At2g34410	chr2:014518719	0.0	W/14518719-14518751,14519036-14519127,14519209-14519346,14519442-14519498,14519575-14519647,14519844-14520002,14520164-14520313,14520419-14520674,14520840-14520955,14521043-14521129,14521212-14521300,14521398-14521460,14521553-14521609,14521713-14521809,14521898-14522053	AT2G34410.1  CDS  gene_syn F13P17.23  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function O-acetyltransferase activity|GO:0016413||ISS  product O-acetyltransferase family protein  note O-acetyltransferase family protein; FUNCTIONS IN: O-acetyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Cas1p-like (InterPro:IPR012419); BEST Arabidopsis thaliana protein match is: acetyltransferase-related (TAIR:AT1G29890.2); Has 183 Blast hits to 183 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 96; Fungi - 23; Plants - 57; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT2G34410.1p  transcript_id AT2G34410.1  protein_id AT2G34410.1p  transcript_id AT2G34410.1  
At2g34410	chr2:014518719	0.0	W/14518719-14518751,14519036-14519127,14519209-14519346,14519442-14519498,14519575-14519647,14519844-14520002,14520164-14520313,14520419-14520674,14520840-14520955,14521043-14521129,14521212-14521300,14521398-14521460,14521553-14521609,14521713-14521809,14521898-14522053	AT2G34410.2  CDS  gene_syn F13P17.23  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function O-acetyltransferase activity|GO:0016413||ISS  product O-acetyltransferase family protein  note O-acetyltransferase family protein; FUNCTIONS IN: O-acetyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Cas1p-like (InterPro:IPR012419); BEST Arabidopsis thaliana protein match is: acetyltransferase-related (TAIR:AT1G29890.2); Has 183 Blast hits to 183 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 96; Fungi - 23; Plants - 57; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT2G34410.2p  transcript_id AT2G34410.2  protein_id AT2G34410.2p  transcript_id AT2G34410.2  
At2g34420	chr2:014522716	0.0	C/14522716-14523513	AT2G34420.1  CDS  gene_syn F13P17.32, LHB1B2, LHCB1.5  gene LHB1B2  function Photosystem II type I chlorophyll a/b-binding protein  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component plastoglobule|GO:0010287|16461379|IDA  go_component light-harvesting complex|GO:0030076||ISS  go_component thylakoid membrane|GO:0042651||TAS  go_process photosynthesis, light harvesting in photosystem II|GO:0009769||TAS  go_process photosynthesis|GO:0015979|1643279|ISS  go_function chlorophyll binding|GO:0016168||ISS  go_function chlorophyll binding|GO:0016168||TAS  product LHB1B2; chlorophyll binding  note LHB1B2; FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting in photosystem II, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: cotyledon, guard cell, juvenile leaf, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll binding (TAIR:AT1G29930.1); Has 1799 Blast hits to 1719 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1555; Viruses - 0; Other Eukaryotes - 242 (source: NCBI BLink).  protein_id AT2G34420.1p  transcript_id AT2G34420.1  protein_id AT2G34420.1p  transcript_id AT2G34420.1  
At2g34430	chr2:014524818	0.0	W/14524818-14525618	AT2G34430.1  CDS  gene_syn F13P17.29, LHB1B1, LHCB1.4, LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX II SUBUNIT B1  gene LHB1B1  function Photosystem II type I chlorophyll a/b-binding protein  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component plastoglobule|GO:0010287|16461379|IDA  go_component light-harvesting complex|GO:0030076||ISS  go_component thylakoid membrane|GO:0042651||TAS  go_process photosynthesis, light harvesting in photosystem II|GO:0009769||TAS  go_process photosynthesis|GO:0015979|1643279|ISS  go_function chlorophyll binding|GO:0016168||ISS  go_function chlorophyll binding|GO:0016168||TAS  product LHB1B1; chlorophyll binding  note LHB1B1; FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting in photosystem II, photosynthesis; LOCATED IN: in 8 components; EXPRESSED IN: shoot, cotyledon, guard cell, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll binding (TAIR:AT1G29930.1); Has 1798 Blast hits to 1719 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1555; Viruses - 0; Other Eukaryotes - 241 (source: NCBI BLink).  protein_id AT2G34430.1p  transcript_id AT2G34430.1  protein_id AT2G34430.1p  transcript_id AT2G34430.1  
At2g34440	chr2:014526950	0.0	W/14526950-14527468	AT2G34440.1  CDS  gene_syn AGAMOUS-LIKE 29, AGL29, F13P17.1  gene AGL29  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL29 (AGAMOUS-LIKE 29); transcription factor  note AGAMOUS-LIKE 29 (AGL29); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL91; transcription factor (TAIR:AT3G66656.1); Has 4299 Blast hits to 4298 proteins in 558 species: Archae - 0; Bacteria - 2; Metazoa - 549; Fungi - 208; Plants - 3488; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT2G34440.1p  transcript_id AT2G34440.1  protein_id AT2G34440.1p  transcript_id AT2G34440.1  
At2g34450	chr2:014529387	0.0	C/14529387-14529448,14528973-14529131,14528681-14528741,14528531-14528575,14528131-14528211,14527918-14527968	AT2G34450.2  CDS  gene_syn F13P17.25  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product high mobility group (HMG1/2) family protein  note high mobility group (HMG1/2) family protein; FUNCTIONS IN: transcription factor activity; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: HMGB3 (HIGH MOBILITY GROUP B 3); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor (TAIR:AT1G20696.3); Has 2168 Blast hits to 1709 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 1499; Fungi - 168; Plants - 295; Viruses - 2; Other Eukaryotes - 204 (source: NCBI BLink).  protein_id AT2G34450.2p  transcript_id AT2G34450.2  protein_id AT2G34450.2p  transcript_id AT2G34450.2  
At2g34450	chr2:014529387	0.0	C/14529387-14529448,14528973-14529131,14528684-14528741,14528531-14528575,14528131-14528211,14527918-14527968	AT2G34450.1  CDS  gene_syn F13P17.25  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product high mobility group (HMG1/2) family protein  note high mobility group (HMG1/2) family protein; FUNCTIONS IN: transcription factor activity; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: HMGB3 (HIGH MOBILITY GROUP B 3); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor (TAIR:AT1G20696.3); Has 2763 Blast hits to 2196 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 1980; Fungi - 209; Plants - 321; Viruses - 2; Other Eukaryotes - 251 (source: NCBI BLink).  protein_id AT2G34450.1p  transcript_id AT2G34450.1  protein_id AT2G34450.1p  transcript_id AT2G34450.1  
At2g34460	chr2:014529635	0.0	W/14529635-14529736,14529841-14530023,14530097-14530489,14530568-14530732	AT2G34460.1  CDS  gene_syn F13P17.33  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  go_component plastoglobule|GO:0010287|16461379|IDA  product flavin reductase-related  note flavin reductase-related; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: cellular metabolic process, metabolic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: binding / catalytic/ coenzyme binding (TAIR:AT3G18890.1); Has 2946 Blast hits to 2906 proteins in 716 species: Archae - 28; Bacteria - 1803; Metazoa - 133; Fungi - 58; Plants - 295; Viruses - 0; Other Eukaryotes - 629 (source: NCBI BLink).  protein_id AT2G34460.1p  transcript_id AT2G34460.1  protein_id AT2G34460.1p  transcript_id AT2G34460.1  
At2g34470	chr2:014532359	0.0	C/14532359-14532411,14532064-14532264,14531798-14531858,14531506-14531707,14531274-14531395,14531077-14531181,14530900-14530983	AT2G34470.1  CDS  gene_syn PSKF109, T31E10.19, T31E10_19, UREASE ACCESSORY PROTEIN G, UREASE ACCESSORY PROTEIN UREG, UREG  gene UREG  function Encodes a urease accessory protein which is essential for the activation of plant urease.  go_component membrane|GO:0016020|17432890|IDA  go_function ATP binding|GO:0005524||IEA  go_function nickel ion binding|GO:0016151||IEA  go_process nitrogen compound metabolic process|GO:0006807|16244137|IMP  go_process positive regulation of metalloenzyme activity|GO:0048554|16244137|IMP  go_function nucleotide binding|GO:0000166||ISS  go_function metal ion binding|GO:0046872||ISS  product UREG (UREASE ACCESSORY PROTEIN G); ATP binding / metal ion binding / nickel ion binding / nucleotide binding  note UREASE ACCESSORY PROTEIN G (UREG); FUNCTIONS IN: nickel ion binding, nucleotide binding, metal ion binding, ATP binding; INVOLVED IN: nitrogen compound metabolic process, positive regulation of metalloenzyme activity; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Urease accessory protein UreG (InterPro:IPR004400), [NiFe]-hydrogenase/urease maturation factor, Ni(2+)-binding GTPase (InterPro:IPR012202), Cobalamin (vitamin B12) biosynthesis CobW-like (InterPro:IPR003495); Has 2555 Blast hits to 2552 proteins in 753 species: Archae - 112; Bacteria - 1608; Metazoa - 174; Fungi - 62; Plants - 32; Viruses - 3; Other Eukaryotes - 564 (source: NCBI BLink).  protein_id AT2G34470.1p  transcript_id AT2G34470.1  protein_id AT2G34470.1p  transcript_id AT2G34470.1  
At2g34470	chr2:014532359	0.0	C/14532359-14532411,14532064-14532267,14531798-14531858,14531506-14531707,14531274-14531395,14531077-14531181,14530900-14530983	AT2G34470.2  CDS  gene_syn PSKF109, T31E10.19, T31E10_19, UREASE ACCESSORY PROTEIN G, UREASE ACCESSORY PROTEIN UREG, UREG  gene UREG  function Encodes a urease accessory protein which is essential for the activation of plant urease.  go_component membrane|GO:0016020|17432890|IDA  go_function ATP binding|GO:0005524||IEA  go_function nickel ion binding|GO:0016151||IEA  go_process nitrogen compound metabolic process|GO:0006807|16244137|IMP  go_process positive regulation of metalloenzyme activity|GO:0048554|16244137|IMP  go_function nucleotide binding|GO:0000166||ISS  go_function metal ion binding|GO:0046872||ISS  product UREG (UREASE ACCESSORY PROTEIN G); ATP binding / metal ion binding / nickel ion binding / nucleotide binding  note UREASE ACCESSORY PROTEIN G (UREG); FUNCTIONS IN: nickel ion binding, nucleotide binding, metal ion binding, ATP binding; INVOLVED IN: nitrogen compound metabolic process, positive regulation of metalloenzyme activity; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Urease accessory protein UreG (InterPro:IPR004400), [NiFe]-hydrogenase/urease maturation factor, Ni(2+)-binding GTPase (InterPro:IPR012202), Cobalamin (vitamin B12) biosynthesis CobW-like (InterPro:IPR003495); Has 2594 Blast hits to 2590 proteins in 760 species: Archae - 112; Bacteria - 1618; Metazoa - 191; Fungi - 65; Plants - 36; Viruses - 0; Other Eukaryotes - 572 (source: NCBI BLink).  protein_id AT2G34470.2p  transcript_id AT2G34470.2  protein_id AT2G34470.2p  transcript_id AT2G34470.2  
At2g34480	chr2:014534147	0.0	C/14534147-14534161,14533923-14534038,14533761-14533824,14532916-14533257	AT2G34480.1  CDS  gene_syn F13P17.34  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L18A (RPL18aB)  note 60S ribosomal protein L18A (RPL18aB); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18ae (InterPro:IPR002670); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L18A (RPL18aC) (TAIR:AT3G14600.1); Has 545 Blast hits to 543 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 242; Fungi - 102; Plants - 93; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT2G34480.1p  transcript_id AT2G34480.1  protein_id AT2G34480.1p  transcript_id AT2G34480.1  
At2g34490	chr2:014535874	0.0	C/14535874-14537373	AT2G34490.1  CDS  gene_syn CYP710A2, F13P17.22, cytochrome P450, family 710, subfamily A, polypeptide 2  gene CYP710A2  function Encodes a protein with C22-sterol desaturase activity. The enzyme was shown to catalyze the conversion of both 24-<i>epi</i>-campesterol and &beta;-sitosterol to brassicasterol and stigmasterol, respectively, in the presence of NADPH.  go_component endomembrane system|GO:0012505||IEA  go_function C-22 sterol desaturase activity|GO:0000249|16531502|IDA  go_function oxygen binding|GO:0019825||ISS  product CYP710A2 (cytochrome P450, family 710, subfamily A, polypeptide 2); C-22 sterol desaturase/ oxygen binding  note cytochrome P450, family 710, subfamily A, polypeptide 2 (CYP710A2); FUNCTIONS IN: oxygen binding, C-22 sterol desaturase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP710A1 (cytochrome P450, family 710, subfamily A, polypeptide 1); C-22 sterol desaturase/ oxygen binding (TAIR:AT2G34500.1); Has 19152 Blast hits to 19099 proteins in 1085 species: Archae - 19; Bacteria - 1784; Metazoa - 9356; Fungi - 2890; Plants - 4487; Viruses - 0; Other Eukaryotes - 616 (source: NCBI BLink).  protein_id AT2G34490.1p  transcript_id AT2G34490.1  protein_id AT2G34490.1p  transcript_id AT2G34490.1  
At2g34500	chr2:014539712	0.0	C/14539712-14541199	AT2G34500.1  CDS  gene_syn CYP710A1, F13P17.35, cytochrome P450, family 710, subfamily A, polypeptide 1  gene CYP710A1  function Encodes a protein with C22-sterol desaturase activity. The enzyme was shown to catalyze in the presence of NADPH the conversion of &beta;-sitosterol to stigmasterol, but not that of 24-<i>epi</i>-campesterol to brassicasterol (unlike CYP710A2).  go_component endomembrane system|GO:0012505||IEA  go_function C-22 sterol desaturase activity|GO:0000249|16531502|IDA  go_function oxygen binding|GO:0019825||ISS  product CYP710A1 (cytochrome P450, family 710, subfamily A, polypeptide 1); C-22 sterol desaturase/ oxygen binding  note cytochrome P450, family 710, subfamily A, polypeptide 1 (CYP710A1); FUNCTIONS IN: oxygen binding, C-22 sterol desaturase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP710A2 (cytochrome P450, family 710, subfamily A, polypeptide 2); C-22 sterol desaturase/ oxygen binding (TAIR:AT2G34490.1); Has 18776 Blast hits to 18741 proteins in 1048 species: Archae - 21; Bacteria - 1669; Metazoa - 9310; Fungi - 2785; Plants - 4408; Viruses - 0; Other Eukaryotes - 583 (source: NCBI BLink).  protein_id AT2G34500.1p  transcript_id AT2G34500.1  protein_id AT2G34500.1p  transcript_id AT2G34500.1  
At2g34510	chr2:014546618	0.0	C/14546618-14546732,14544791-14545303,14544114-14544691	AT2G34510.1  CDS  gene_syn T31E10.15, T31E10_15  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29980.1); Has 177 Blast hits to 163 proteins in 15 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G34510.1p  transcript_id AT2G34510.1  protein_id AT2G34510.1p  transcript_id AT2G34510.1  
At2g34520	chr2:014548218	0.0	C/14548218-14548712	AT2G34520.1  CDS  gene_syn RPS14, T31E10.14, T31E10_14, mitochondrial ribosomal protein S14  gene RPS14  function nuclear-encoded mitochondrial ribosomal protein S14  go_component mitochondrion|GO:0005739||TAS  go_component mitochondrial small ribosomal subunit|GO:0005763||TAS  go_process translation|GO:0006412||TAS  go_function structural constituent of ribosome|GO:0003735|10503545|TAS  product RPS14 (mitochondrial ribosomal protein S14); structural constituent of ribosome  note mitochondrial ribosomal protein S14 (RPS14); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: mitochondrion, mitochondrial small ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S14 (InterPro:IPR001209), Ribosomal protein S14, conserved site (InterPro:IPR018271); Has 4478 Blast hits to 4478 proteins in 1317 species: Archae - 0; Bacteria - 2010; Metazoa - 97; Fungi - 87; Plants - 488; Viruses - 0; Other Eukaryotes - 1796 (source: NCBI BLink).  protein_id AT2G34520.1p  transcript_id AT2G34520.1  protein_id AT2G34520.1p  transcript_id AT2G34520.1  
At2g34530	chr2:014549834	0.0	C/14549834-14550217,14549613-14549759,14549452-14549533,14549268-14549380	AT2G34530.2  CDS  gene_syn T31E10.13, T31E10_13  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 17 Blast hits to 17 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G34530.2p  transcript_id AT2G34530.2  protein_id AT2G34530.2p  transcript_id AT2G34530.2  
At2g34530	chr2:014549834	0.0	C/14549834-14550217,14549613-14549759,14549456-14549533,14549141-14549380	AT2G34530.1  CDS  gene_syn T31E10.13, T31E10_13  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 14 Blast hits to 14 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G34530.1p  transcript_id AT2G34530.1  protein_id AT2G34530.1p  transcript_id AT2G34530.1  
At2g34540	chr2:014550699	0.0	W/14550699-14551232,14551477-14551617,14551732-14551815,14551930-14552037	AT2G34540.2  CDS  gene_syn T31E10.12, T31E10_12  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34530.1); Has 16 Blast hits to 16 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G34540.2p  transcript_id AT2G34540.2  protein_id AT2G34540.2p  transcript_id AT2G34540.2  
At2g34540	chr2:014550699	0.0	W/14550699-14551232,14551477-14551617,14551732-14551872	AT2G34540.1  CDS  gene_syn T31E10.12, T31E10_12  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; Has 11 Blast hits to 11 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G34540.1p  transcript_id AT2G34540.1  protein_id AT2G34540.1p  transcript_id AT2G34540.1  
At2g34555	chr2:014557102	0.0	W/14557102-14557502,14557868-14558207,14558416-14558682	AT2G34555.1  CDS  gene_syn ATGA2OX3, gibberellin 2-oxidase 3  gene ATGA2OX3  go_process gibberellin catabolic process|GO:0045487|10200325|IDA  go_function gibberellin 2-beta-dioxygenase activity|GO:0045543|10200325|IDA  product ATGA2OX3 (gibberellin 2-oxidase 3); gibberellin 2-beta-dioxygenase  note gibberellin 2-oxidase 3 (ATGA2OX3); FUNCTIONS IN: gibberellin 2-beta-dioxygenase activity; INVOLVED IN: gibberellin catabolic process; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: ATGA2OX2 (GIBBERELLIN 2-OXIDASE); gibberellin 2-beta-dioxygenase (TAIR:AT1G30040.1); Has 5587 Blast hits to 5572 proteins in 665 species: Archae - 0; Bacteria - 701; Metazoa - 86; Fungi - 504; Plants - 3045; Viruses - 0; Other Eukaryotes - 1251 (source: NCBI BLink).  protein_id AT2G34555.1p  transcript_id AT2G34555.1  protein_id AT2G34555.1p  transcript_id AT2G34555.1  
At2g34560	chr2:014560266	0.0	W/14560266-14560307,14560666-14560809,14560925-14560971,14561070-14561135,14561216-14561323,14561404-14561470,14561638-14561722,14561815-14561978,14562064-14562165,14562250-14562472,14562562-14562695	AT2G34560.2  CDS  gene_syn T31E10.10, T31E10_10  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process protein metabolic process|GO:0019538||ISS  go_function ATP binding|GO:0005524||ISS  go_function ATPase activity|GO:0016887||ISS  product katanin, putative  note katanin, putative; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: ERH3 (ECTOPIC ROOT HAIR 3); ATP binding / nucleoside-triphosphatase/ nucleotide binding (TAIR:AT1G80350.1); Has 20760 Blast hits to 19256 proteins in 1746 species: Archae - 867; Bacteria - 6104; Metazoa - 3963; Fungi - 2248; Plants - 1439; Viruses - 18; Other Eukaryotes - 6121 (source: NCBI BLink).  protein_id AT2G34560.2p  transcript_id AT2G34560.2  protein_id AT2G34560.2p  transcript_id AT2G34560.2  
At2g34560	chr2:014560266	0.0	W/14560266-14560307,14560693-14560809,14560925-14560971,14561070-14561135,14561216-14561323,14561404-14561470,14561638-14561722,14561815-14561978,14562064-14562165,14562250-14562472,14562562-14562695	AT2G34560.1  CDS  gene_syn T31E10.10, T31E10_10  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process protein metabolic process|GO:0019538||ISS  go_function ATP binding|GO:0005524||ISS  go_function ATPase activity|GO:0016887||ISS  product katanin, putative  note katanin, putative; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: ERH3 (ECTOPIC ROOT HAIR 3); ATP binding / nucleoside-triphosphatase/ nucleotide binding (TAIR:AT1G80350.1); Has 20757 Blast hits to 19253 proteins in 1746 species: Archae - 867; Bacteria - 6104; Metazoa - 3963; Fungi - 2247; Plants - 1439; Viruses - 18; Other Eukaryotes - 6119 (source: NCBI BLink).  protein_id AT2G34560.1p  transcript_id AT2G34560.1  protein_id AT2G34560.1p  transcript_id AT2G34560.1  
At2g34570	chr2:014564491	0.0	C/14564491-14564681,14564321-14564401,14563849-14563969,14563466-14563744,14563221-14563307,14563048-14563134	AT2G34570.1  CDS  gene_syn MEE21, T31E10.9, T31E10_9, maternal effect embryo arrest 21  gene MEE21  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function molecular_function|GO:0003674||ND  product MEE21 (maternal effect embryo arrest 21)  note maternal effect embryo arrest 21 (MEE21); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF652 (InterPro:IPR006984); Has 510 Blast hits to 510 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 200; Fungi - 167; Plants - 56; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).  protein_id AT2G34570.1p  transcript_id AT2G34570.1  protein_id AT2G34570.1p  transcript_id AT2G34570.1  
At2g34580	chr2:014567563	0.0	C/14567563-14567640,14567081-14567268,14566827-14566989,14566673-14566732	AT2G34580.1  CDS  gene_syn T31E10.8, T31E10_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 445 Blast hits to 423 proteins in 86 species: Archae - 8; Bacteria - 31; Metazoa - 102; Fungi - 25; Plants - 11; Viruses - 2; Other Eukaryotes - 266 (source: NCBI BLink).  protein_id AT2G34580.1p  transcript_id AT2G34580.1  protein_id AT2G34580.1p  transcript_id AT2G34580.1  
At2g34580	chr2:014567563	0.0	C/14567563-14567640,14567081-14567268,14566827-14566989,14566673-14566732	AT2G34580.2  CDS  gene_syn T31E10.8, T31E10_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 445 Blast hits to 423 proteins in 86 species: Archae - 8; Bacteria - 31; Metazoa - 102; Fungi - 25; Plants - 11; Viruses - 2; Other Eukaryotes - 266 (source: NCBI BLink).  protein_id AT2G34580.2p  transcript_id AT2G34580.2  protein_id AT2G34580.2p  transcript_id AT2G34580.2  
At2g34585	chr2:014568227	0.0	C/14568227-14568472	AT2G34585.1  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 31 Blast hits to 31 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G34585.1p  transcript_id AT2G34585.1  protein_id AT2G34585.1p  transcript_id AT2G34585.1  
At2g34590	chr2:014570742	0.0	C/14570742-14570844,14570548-14570648,14570426-14570469,14569367-14570002,14568956-14569292	AT2G34590.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_process pollen tube development|GO:0048868|19237690|IMP  go_function pyruvate dehydrogenase (acetyl-transferring) activity|GO:0004739||NAS  go_function transketolase activity|GO:0004802||ISS  product transketolase family protein  note transketolase family protein; FUNCTIONS IN: pyruvate dehydrogenase (acetyl-transferring) activity, transketolase activity; INVOLVED IN: pollen tube development; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, C-terminal (InterPro:IPR005476), Transketolase C-terminal-like (InterPro:IPR015941), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase, central region (InterPro:IPR005475); BEST Arabidopsis thaliana protein match is: PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA); pyruvate dehydrogenase (acetyl-transferring) (TAIR:AT1G30120.1); Has 9465 Blast hits to 9457 proteins in 1366 species: Archae - 92; Bacteria - 4722; Metazoa - 387; Fungi - 143; Plants - 155; Viruses - 0; Other Eukaryotes - 3966 (source: NCBI BLink).  protein_id AT2G34590.1p  transcript_id AT2G34590.1  protein_id AT2G34590.1p  transcript_id AT2G34590.1  
At2g34600	chr2:014573172	0.0	W/14573172-14573296,14573397-14573718	AT2G34600.1  CDS  gene_syn JASMONATE-ZIM-DOMAIN PROTEIN 7, JAZ7, T31E10.6, T31E10_6, TIFY5B  gene JAZ7  go_component cellular_component|GO:0005575||ND  go_process response to jasmonic acid stimulus|GO:0009753|17637677|IEP  go_process response to chitin|GO:0010200|17722694|IEP  go_function molecular_function|GO:0003674||ND  product JAZ7 (JASMONATE-ZIM-DOMAIN PROTEIN 7)  note JASMONATE-ZIM-DOMAIN PROTEIN 7 (JAZ7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to jasmonic acid stimulus, response to chitin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399); BEST Arabidopsis thaliana protein match is: JAZ8 (JASMONATE-ZIM-DOMAIN PROTEIN 8) (TAIR:AT1G30135.1); Has 16 Blast hits to 16 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G34600.1p  transcript_id AT2G34600.1  protein_id AT2G34600.1p  transcript_id AT2G34600.1  
At2g34610	chr2:014575467	0.0	W/14575467-14576339	AT2G34610.1  CDS  gene_syn T31E10.5, T31E10_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30190.1); Has 310 Blast hits to 247 proteins in 66 species: Archae - 0; Bacteria - 3; Metazoa - 72; Fungi - 16; Plants - 29; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink).  protein_id AT2G34610.1p  transcript_id AT2G34610.1  protein_id AT2G34610.1p  transcript_id AT2G34610.1  
At2g34620	chr2:014577196	0.0	W/14577196-14577791,14577888-14578203	AT2G34620.1  CDS  gene_syn T31E10.4, T31E10_4  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial transcription termination factor-related / mTERF-related  note mitochondrial transcription termination factor-related / mTERF-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: mitochondrial transcription termination factor-related / mTERF-related (TAIR:AT2G03050.1); Has 469 Blast hits to 329 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 0; Plants - 400; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT2G34620.1p  transcript_id AT2G34620.1  protein_id AT2G34620.1p  transcript_id AT2G34620.1  
At2g34630	chr2:014578689	0.0	W/14578689-14578832,14579337-14579429,14579660-14579740,14579860-14579931,14580028-14580159,14580251-14580337,14580438-14580509,14580705-14580790,14580975-14581107,14581189-14581377,14581453-14581632	AT2G34630.2  CDS  gene_syn GERANYL DIPHOSPHATE SYNTHASE 1, GERANYLPYROPHOSPHATE SYNTHASE, GPPS, GPS1, T31E10.3, T31E10_3  gene GPS1  function Encodes a geranyl diphosphate synthase. RNAi lines are dwarf. T-DNA knock-out lines are embryo lethal.  go_component chloroplast|GO:0009507|11069698|IDA  go_component plastid|GO:0009536|11069698|IDA  go_process embryonic development|GO:0009790|17877699|IMP  go_function dimethylallyltranstransferase activity|GO:0004161|11069698|IDA  go_function dimethylallyltranstransferase activity|GO:0004161|11069698|IGI  product geranyl diphosphate synthase, putative / GPPS, putative / dimethylallyltransferase, putative / prenyl transferase, putative  note GERANYL DIPHOSPHATE SYNTHASE 1 (GPS1); FUNCTIONS IN: dimethylallyltranstransferase activity; INVOLVED IN: embryonic development; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: SPS2 (Solanesyl diphosphate synthase 2); trans-octaprenyltranstransferase (TAIR:AT1G17050.1); Has 10810 Blast hits to 10808 proteins in 1653 species: Archae - 211; Bacteria - 4878; Metazoa - 331; Fungi - 338; Plants - 248; Viruses - 0; Other Eukaryotes - 4804 (source: NCBI BLink).  protein_id AT2G34630.2p  transcript_id AT2G34630.2  protein_id AT2G34630.2p  transcript_id AT2G34630.2  
At2g34630	chr2:014579726	0.0	W/14579726-14579740,14579860-14579931,14580028-14580159,14580251-14580337,14580438-14580509,14580705-14580790,14580975-14581107,14581189-14581377,14581453-14581632	AT2G34630.1  CDS  gene_syn GERANYL DIPHOSPHATE SYNTHASE 1, GERANYLPYROPHOSPHATE SYNTHASE, GPPS, GPS1, T31E10.3, T31E10_3  gene GPS1  function Encodes a geranyl diphosphate synthase. RNAi lines are dwarf. T-DNA knock-out lines are embryo lethal.  go_component chloroplast|GO:0009507|11069698|IDA  go_component plastid|GO:0009536|11069698|IDA  go_process embryonic development|GO:0009790|17877699|IMP  go_function dimethylallyltranstransferase activity|GO:0004161|11069698|IDA  go_function dimethylallyltranstransferase activity|GO:0004161|11069698|IGI  product geranyl diphosphate synthase, putative / GPPS, putative / dimethylallyltransferase, putative / prenyl transferase, putative  note GERANYL DIPHOSPHATE SYNTHASE 1 (GPS1); FUNCTIONS IN: dimethylallyltranstransferase activity; INVOLVED IN: embryonic development; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: SPS2 (Solanesyl diphosphate synthase 2); trans-octaprenyltranstransferase (TAIR:AT1G17050.1); Has 10759 Blast hits to 10757 proteins in 1653 species: Archae - 211; Bacteria - 4880; Metazoa - 331; Fungi - 338; Plants - 248; Viruses - 0; Other Eukaryotes - 4751 (source: NCBI BLink).  protein_id AT2G34630.1p  transcript_id AT2G34630.1  protein_id AT2G34630.1p  transcript_id AT2G34630.1  
At2g34640	chr2:014584262	0.0	C/14584262-14584345,14583464-14584144,14583261-14583373,14582927-14583186,14582723-14582844,14582578-14582646,14582430-14582483,14582244-14582339,14582061-14582165	AT2G34640.1  CDS  gene_syn PLASTID TRANSCRIPTIONALLY ACTIVE12, PTAC12, T31E10.2, T31E10_2  gene PTAC12  function Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.  go_component nucleoid|GO:0009295|16326926|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastid chromosome|GO:0009508|16326926|IDA  go_process transcription from plastid promoter|GO:0042793|16326926|IMP  go_process positive regulation of transcription, DNA-dependent|GO:0045893|16326926|IMP  go_function molecular_function|GO:0003674||ND  product PTAC12 (PLASTID TRANSCRIPTIONALLY ACTIVE12)  note PLASTID TRANSCRIPTIONALLY ACTIVE12 (PTAC12); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: positive regulation of transcription, DNA-dependent, transcription from plastid promoter; LOCATED IN: plastid chromosome, chloroplast, nucleoid; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 308 Blast hits to 263 proteins in 83 species: Archae - 0; Bacteria - 3; Metazoa - 100; Fungi - 30; Plants - 24; Viruses - 9; Other Eukaryotes - 142 (source: NCBI BLink).  protein_id AT2G34640.1p  transcript_id AT2G34640.1  protein_id AT2G34640.1p  transcript_id AT2G34640.1  
At2g34650	chr2:014591010	0.0	C/14591010-14591557,14589934-14590702	AT2G34650.1  CDS  gene_syn ABR, ABRUPTUS, PID, PINOID, PROTEIN KINASE PINOID, T31E10.1, T31E10_1  gene PID  function Encodes a protein serine/threonine kinase that may act as a positive regulator of cellular auxin efflux, as a a binary switch for PIN polarity, and as a negative regulator of auxin signaling. Recessive mutants exhibit similar phenotypes as pin-formed mutants in flowers and inflorescence but distinct phenotypes in cotyledons and leaves. Expressed in the vascular tissue proximal to root and shoot meristems, shoot apex, and embryos. Expression is induced by auxin. Overexpression of the gene results in phenotypes in the root and shoot similar to those found in auxin-insensitive mutants. The protein physically interacts with TCH3 (TOUCH3) and PID-BINDING PROTEIN 1 (PBP1), a previously uncharacterized protein containing putative EF-hand calcium-binding motifs. Acts together with ENP (ENHANCER OF PINOID) to instruct precursor cells to elaborate cotyledons in the transition stage embryo. Interacts with PDK1. PID autophosphorylation is required for the ability of PID to phosphorylate an exogenous substrate. PID activation loop is required for PDK1-dependent PID phosphorylation and requires the PIF domain. Negative regulator of root hair growth. PID kinase activity is critical for the inhibition of root hair growth and for maintaining the proper subcellular localization of PID.  go_component cell surface|GO:0009986|16731587|IDA  go_process response to auxin stimulus|GO:0009733|11641228|IEP  go_process auxin mediated signaling pathway|GO:0009734|10693763|IMP  go_process auxin polar transport|GO:0009926|10693763|IMP  go_process auxin polar transport|GO:0009926|16731587|IMP  go_process root hair initiation|GO:0048766|16731587|IMP  go_process root hair elongation|GO:0048767|16731587|IMP  go_process cotyledon development|GO:0048825|16107478|IGI  go_process cotyledon development|GO:0048825|18000043|IGI  go_process cotyledon development|GO:0048825|19075219|IGI  go_process phyllome development|GO:0048827|18000043|IGI  go_function protein kinase activity|GO:0004672|16601102|IDA  go_function protein serine/threonine kinase activity|GO:0004674|10693763|IDA  go_function protein serine/threonine kinase activity|GO:0004674|11641228|ISS  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product PID (PINOID); kinase/ protein kinase/ protein serine/threonine kinase  note PINOID (PID); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity; INVOLVED IN: in 7 processes; LOCATED IN: cell surface; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: D6PKL2 (D6 PROTEIN KINASE LIKE 2); kinase (TAIR:AT5G47750.1); Has 69313 Blast hits to 67655 proteins in 1856 species: Archae - 25; Bacteria - 6852; Metazoa - 30523; Fungi - 7408; Plants - 9993; Viruses - 303; Other Eukaryotes - 14209 (source: NCBI BLink).  protein_id AT2G34650.1p  transcript_id AT2G34650.1  protein_id AT2G34650.1p  transcript_id AT2G34650.1  
At2g34655	chr2:014596836	0.0	W/14596836-14596904	AT2G34655.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G34655.1p  transcript_id AT2G34655.1  protein_id AT2G34655.1p  transcript_id AT2G34655.1  
At2g34660	chr2:014603267	0.0	W/14603267-14603596,14603690-14603868,14603955-14603994,14604117-14604273,14604439-14604553,14604632-14604712,14605101-14605125,14605352-14605408,14605503-14605568,14605849-14605923,14606328-14606435,14606855-14606989,14607126-14607232,14607310-14607403,14607488-14607655,14607830-14607970,14608071-14608271,14608492-14608590,14608691-14608843,14608966-14609363,14609546-14609726,14609935-14610258,14610462-14611340,14611416-14611661,14611755-14612169,14612290-14612387	AT2G34660.1  CDS  gene_syn ABC TRANSPORTER, ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 2, ATMRP2, EST4, MRP2, MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 2, T29F13.13, T29F13_13  gene ATMRP2  function encodes a multidrug resistance-associated protein that is MgATP-energized glutathione S-conjugate pump. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim.  go_component plant-type vacuole|GO:0000325|16618929|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component vacuolar membrane|GO:0005774|16618929|IDA  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|11346655|ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|9490749|IDA  product ATMRP2 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 2); ATPase, coupled to transmembrane movement of substances  note ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 2 (ATMRP2); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: response to cyclopentenone; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: MRP1 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1); ATPase, coupled to transmembrane movement of substances / xenobiotic-transporting ATPase (TAIR:AT1G30400.2); Has 397017 Blast hits to 209056 proteins in 2560 species: Archae - 7469; Bacteria - 282303; Metazoa - 10970; Fungi - 5280; Plants - 2886; Viruses - 19; Other Eukaryotes - 88090 (source: NCBI BLink).  protein_id AT2G34660.1p  transcript_id AT2G34660.1  protein_id AT2G34660.1p  transcript_id AT2G34660.1  
At2g34670	chr2:014614352	0.0	C/14614352-14615231,14614051-14614232,14613746-14613969,14613239-14613638	AT2G34670.1  CDS  gene_syn T29F13.12, T29F13_12  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  product proline-rich family protein  note proline-rich family protein; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT3G60320.1); Has 1236 Blast hits to 1009 proteins in 131 species: Archae - 0; Bacteria - 42; Metazoa - 441; Fungi - 110; Plants - 400; Viruses - 93; Other Eukaryotes - 150 (source: NCBI BLink).  protein_id AT2G34670.1p  transcript_id AT2G34670.1  protein_id AT2G34670.1p  transcript_id AT2G34670.1  
At2g34680	chr2:014627488	0.0	C/14627488-14628300,14627318-14627389,14626972-14627037,14626810-14626881,14626660-14626725,14626465-14626527,14626309-14626374,14625910-14626009,14625348-14625449,14624829-14625061,14624634-14624748,14624400-14624520,14624100-14624275,14623596-14623731,14623392-14623492,14623236-14623283,14622708-14622892,14622511-14622628,14622105-14622232,14621674-14621845,14621269-14621387,14620990-14621158,14620790-14620874,14620635-14620708,14620422-14620541,14620070-14620265,14619859-14619980,14619398-14619602,14619027-14619100,14618744-14618927,14618387-14618568,14618145-14618300,14617852-14617983,14617543-14617601,14617424-14617456,14617207-14617338,14616947-14617123	AT2G34680.1  CDS  gene_syn AIR9, T29F13.11, T29F13_11  gene AIR9  function isolated from differential screening of a cDNA library from auxin-treated root culture. sequence does not show homology to any known proteins and is predicted to be extracellular.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function protein binding|GO:0005515||IEA  go_process response to auxin stimulus|GO:0009733|10080694|IEP  go_process lateral root morphogenesis|GO:0010102|10080694|IEP  go_function protein binding|GO:0005515||ISS  product AIR9; protein binding  note AIR9; FUNCTIONS IN: protein binding; INVOLVED IN: response to auxin stimulus, lateral root morphogenesis; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT4G03260.2); Has 21884 Blast hits to 10163 proteins in 700 species: Archae - 6; Bacteria - 4766; Metazoa - 7326; Fungi - 2712; Plants - 660; Viruses - 161; Other Eukaryotes - 6253 (source: NCBI BLink).  protein_id AT2G34680.1p  transcript_id AT2G34680.1  protein_id AT2G34680.1p  transcript_id AT2G34680.1  
At2g34690	chr2:014630425	0.0	W/14630425-14630616,14630838-14631010,14631208-14631356,14631673-14631779	AT2G34690.1  CDS  gene_syn ACCELERATED CELL DEATH 11, ACD11, T29F13.10, T29F13_10  gene ACD11  function Gene product transports the glycolipid precursor sphingosine between membranes in vitro. Mutant constitutively expresses defense-related genes that accompany the hypersensitive response normally triggered by avirulent pathogens.  go_component cytoplasm|GO:0005737||IEA  go_process cell death|GO:0008219|11850411|IMP  go_process response to salicylic acid stimulus|GO:0009751|11850411|IMP  go_process defense response to bacterium, incompatible interaction|GO:0009816|11850411|IMP  go_function sphingosine transmembrane transporter activity|GO:0010175|11850411|IDA  product ACD11 (ACCELERATED CELL DEATH 11); sphingosine transmembrane transporter  note ACCELERATED CELL DEATH 11 (ACD11); FUNCTIONS IN: sphingosine transmembrane transporter activity; INVOLVED IN: defense response to bacterium, incompatible interaction, cell death, response to salicylic acid stimulus; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycolipid transfer protein, GLTP (InterPro:IPR014830); BEST Arabidopsis thaliana protein match is: glycolipid binding / glycolipid transporter (TAIR:AT4G39670.1); Has 345 Blast hits to 345 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 243; Fungi - 18; Plants - 78; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT2G34690.1p  transcript_id AT2G34690.1  protein_id AT2G34690.1p  transcript_id AT2G34690.1  
At2g34700	chr2:014635381	0.0	C/14635381-14635597,14634298-14634608	AT2G34700.1  CDS  gene_syn T29F13.9, T29F13_9  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pollen Ole e 1 allergen and extensin family protein  note pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen and extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: AGP31 (arabinogalactan-protein 31) (TAIR:AT1G28290.2); Has 118 Blast hits to 118 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 118; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G34700.1p  transcript_id AT2G34700.1  protein_id AT2G34700.1p  transcript_id AT2G34700.1  
At2g34710	chr2:014643761	0.0	C/14643761-14643993,14643039-14643198,14642832-14642947,14642656-14642746,14642444-14642539,14642165-14642362,14641935-14642090,14641776-14641850,14641581-14641687,14641306-14641495,14641026-14641214,14640854-14640934,14640631-14640771,14640226-14640539,14640013-14640127,14639778-14639927,14639548-14639694	AT2G34710.1  CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, ATHB-14, ATHB14, PHABULOSA, PHABULOSA 1D, PHB, PHB-1D, T29F13.8, T29F13_8  gene PHB  function Dominant PHB mutations cause transformation of abaxial leaf fates into adaxial leaf fates. Encodes a member of HD-Zip family which contains homeodomain-leucine zipper domains and domain similar to a mammalian sterol binding domain. Has overlapping functions with PHAVOLUTA, REVOLUTA and CORONA.  go_component nucleus|GO:0005634|16581911|IDA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process determination of bilateral symmetry|GO:0009855|15598805|IMP  go_process polarity specification of adaxial/abaxial axis|GO:0009944|15598805|IMP  go_process adaxial/abaxial pattern formation|GO:0009955|9655815|IMP  go_process meristem initiation|GO:0010014|15598805|IMP  go_process primary shoot apical meristem specification|GO:0010072|15598805|IMP  go_process integument development|GO:0080060|19054366|IGI  go_function DNA binding|GO:0003677|11395776|ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product PHB (PHABULOSA); DNA binding / transcription factor  note PHABULOSA (PHB); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), MEKHLA (InterPro:IPR013978), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: PHV (PHAVOLUTA); DNA binding / protein binding / transcription factor (TAIR:AT1G30490.1); Has 2564 Blast hits to 2499 proteins in 213 species: Archae - 0; Bacteria - 17; Metazoa - 799; Fungi - 70; Plants - 1659; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT2G34710.1p  transcript_id AT2G34710.1  protein_id AT2G34710.1p  transcript_id AT2G34710.1  
At2g34720	chr2:014651228	0.0	C/14651228-14651255,14651020-14651135,14650551-14650634,14650298-14650462,14650018-14650221	AT2G34720.1  CDS  gene_syn NF-YA4, NUCLEAR FACTOR Y, SUBUNIT A4, T29F13.7, T29F13_7  gene NF-YA4  go_component nucleus|GO:0005634|15610358|IDA  go_component CCAAT-binding factor complex|GO:0016602||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process negative regulation of gene-specific transcription|GO:0032582|19207209|IDA  go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|17138697|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function specific transcriptional repressor activity|GO:0016566|19207209|IDA  product NF-YA4 (NUCLEAR FACTOR Y, SUBUNIT A4); specific transcriptional repressor/ transcription factor  note NUCLEAR FACTOR Y, SUBUNIT A4 (NF-YA4); FUNCTIONS IN: transcription factor activity, specific transcriptional repressor activity; INVOLVED IN: negative regulation of gene-specific transcription, regulation of transcription, DNA-dependent, regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: CCAAT-binding factor complex, nucleus; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: NF-YA7 (NUCLEAR FACTOR Y, SUBUNIT A7); specific transcriptional repressor/ transcription factor (TAIR:AT1G30500.2); Has 441 Blast hits to 441 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 88; Plants - 215; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT2G34720.1p  transcript_id AT2G34720.1  protein_id AT2G34720.1p  transcript_id AT2G34720.1  
At2g34730	chr2:014654611	0.0	W/14654611-14656793,14656902-14657028,14657187-14657288,14657378-14657443	AT2G34730.1  CDS  gene_syn T29F13.6, T29F13_6  go_component mitochondrion|GO:0005739|14671022|IDA  product myosin heavy chain-related  note myosin heavy chain-related; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: CIP1 (COP1-INTERACTIVE PROTEIN 1); protein binding (TAIR:AT5G41790.1); Has 62301 Blast hits to 34781 proteins in 1535 species: Archae - 852; Bacteria - 6591; Metazoa - 32389; Fungi - 4577; Plants - 2292; Viruses - 390; Other Eukaryotes - 15210 (source: NCBI BLink).  protein_id AT2G34730.1p  transcript_id AT2G34730.1  protein_id AT2G34730.1p  transcript_id AT2G34730.1  
At2g34740	chr2:014658730	0.0	W/14658730-14658747,14658868-14658912,14659014-14659061,14659132-14659458,14659542-14659818,14659919-14660073,14660156-14660305	AT2G34740.1  CDS  gene_syn T29F13.5, T29F13_5  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product catalytic/ protein serine/threonine phosphatase  note catalytic/ protein serine/threonine phosphatase; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT4G28400.1); Has 5333 Blast hits to 5320 proteins in 675 species: Archae - 7; Bacteria - 1029; Metazoa - 1363; Fungi - 524; Plants - 1327; Viruses - 11; Other Eukaryotes - 1072 (source: NCBI BLink).  protein_id AT2G34740.1p  transcript_id AT2G34740.1  protein_id AT2G34740.1p  transcript_id AT2G34740.1  
At2g34750	chr2:014663664	0.0	C/14663664-14663792,14663453-14663542,14663289-14663360,14663113-14663184,14662790-14663026,14662588-14662698,14662396-14662500,14662153-14662278,14661976-14662044,14661758-14661864,14661571-14661654,14661373-14661460,14661078-14661191,14660800-14660984,14660449-14660701	AT2G34750.1  CDS  gene_syn T29F13.4, T29F13_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA polymerase I transcription factor activity|GO:0003701||ISS  product RNA polymerase I specific transcription initiation factor RRN3 family protein  note RNA polymerase I specific transcription initiation factor RRN3 family protein; FUNCTIONS IN: RNA polymerase I transcription factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase I specific transcription initiation factor RRN3 (InterPro:IPR007991); BEST Arabidopsis thaliana protein match is: RNA polymerase I specific transcription initiation factor RRN3 family protein (TAIR:AT1G30590.1); Has 252 Blast hits to 247 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 85; Plants - 37; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT2G34750.1p  transcript_id AT2G34750.1  protein_id AT2G34750.1p  transcript_id AT2G34750.1  
At2g34760	chr2:014664671	0.0	C/14664671-14666076	AT2G34760.1  pseudogenic_transcript  pseudo  gene_syn T29F13.3  note pseudogene, tubulin beta chain -related, similar to beta-7 tubulin GI:416149 from (Zea mays); blastp match of 47% identity and 3.0e-15 P-value to SP|Q41784|TBB7_MAIZE Tubulin beta-7 chain (Beta-7 tubulin). (Maize) {Zea mays}  
At2g34770	chr2:014666776	0.0	W/14666776-14666826,14666979-14667071,14667180-14667376,14667510-14667615,14667693-14667839,14667942-14668061	AT2G34770.1  CDS  gene_syn FAH1, FAH1P, FATTY ACID HYDROXYLASE 1, T29F13.2, T29F13_2  gene FAH1  function encodes a fatty acid hydroxylase, required for the AtBI-1-mediated suppression of programmed cell death.  go_component endoplasmic reticulum|GO:0005783||IEA  go_process very-long-chain fatty acid metabolic process|GO:0000038|9353282|IDA  go_process very-long-chain fatty acid metabolic process|GO:0000038|9353282|IGI  go_process negative regulation of programmed cell death|GO:0043069|19054355|IGI  go_function catalytic activity|GO:0003824||ISS  go_function fatty acid alpha-hydroxylase activity|GO:0080132|19054355|IGI  product FAH1 (FATTY ACID HYDROXYLASE 1); catalytic/ fatty acid alpha-hydroxylase  note FATTY ACID HYDROXYLASE 1 (FAH1); FUNCTIONS IN: fatty acid alpha-hydroxylase activity, catalytic activity; INVOLVED IN: very-long-chain fatty acid metabolic process, negative regulation of programmed cell death; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: FAH2 (FATTY ACID HYDROXYLASE 2); catalytic/ fatty acid alpha-hydroxylase (TAIR:AT4G20870.1); Has 490 Blast hits to 489 proteins in 211 species: Archae - 0; Bacteria - 193; Metazoa - 94; Fungi - 91; Plants - 45; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT2G34770.1p  transcript_id AT2G34770.1  protein_id AT2G34770.1p  transcript_id AT2G34770.1  
At2g34780	chr2:014668653	0.0	W/14668653-14668709,14668797-14668911,14669190-14670343,14670614-14671896,14672015-14672145,14672258-14672985,14673088-14673200,14673295-14673607	AT2G34780.1  CDS  gene_syn EMB1611, EMBRYO DEFECTIVE 1611, F19I3.1, F19I3_1, MATERNAL EFFECT EMBRYO ARREST 22, MEE22  gene MEE22  function Encodes a novel protein of unknown function that is essential for embryonic development. Severe loss of function alleles are embryo lethal. Analysis of a partial loss of function allele indicates a role for EMB1611 in regulation of endoreduplication and maintenance of meristem cell fate. It appears to be required for maintaining the CLV-WUS regulatory pathway.  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process meristem structural organization|GO:0009933|18980659|IMP  go_process maintenance of meristem identity|GO:0010074|18980659|IMP  go_process negative regulation of DNA endoreduplication|GO:0032876|18980659|IMP  product MEE22 (MATERNAL EFFECT EMBRYO ARREST 22)  note MATERNAL EFFECT EMBRYO ARREST 22 (MEE22); INVOLVED IN: negative regulation of DNA endoreduplication, embryonic development ending in seed dormancy, meristem structural organization, maintenance of meristem identity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 91791 Blast hits to 50220 proteins in 1774 species: Archae - 925; Bacteria - 10578; Metazoa - 44243; Fungi - 6572; Plants - 3080; Viruses - 476; Other Eukaryotes - 25917 (source: NCBI BLink).  protein_id AT2G34780.1p  transcript_id AT2G34780.1  protein_id AT2G34780.1p  transcript_id AT2G34780.1  
At2g34790	chr2:014676747	0.0	C/14676747-14677237,14674732-14675218,14673998-14674618	AT2G34790.1  CDS  gene_syn EDA28, EMBRYO SAC DEVELOPMENT ARREST 28, F19I3.2, F19I3_2, MATERNAL EFFECT EMBRYO ARREST 23, MEE23  gene MEE23  go_component cell wall|GO:0005618|14595688|IDA  go_component cell wall|GO:0005618|15593128|IDA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process polar nucleus fusion|GO:0010197|15634699|IMP  go_function electron carrier activity|GO:0009055||ISS  product MEE23 (MATERNAL EFFECT EMBRYO ARREST 23); FAD binding / catalytic/ electron carrier/ oxidoreductase  note MATERNAL EFFECT EMBRYO ARREST 23 (MEE23); FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; INVOLVED IN: embryonic development ending in seed dormancy, polar nucleus fusion; LOCATED IN: cell wall; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT1G30760.1); Has 3008 Blast hits to 2897 proteins in 486 species: Archae - 39; Bacteria - 1379; Metazoa - 7; Fungi - 1076; Plants - 327; Viruses - 0; Other Eukaryotes - 180 (source: NCBI BLink).  protein_id AT2G34790.1p  transcript_id AT2G34790.1  protein_id AT2G34790.1p  transcript_id AT2G34790.1  
At2g34800	chr2:014682363	0.0	C/14682363-14682515	AT2G34800.1  CDS  gene_syn F19I3.3, F19I3_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G34800.1p  transcript_id AT2G34800.1  protein_id AT2G34800.1p  transcript_id AT2G34800.1  
At2g34810	chr2:014685292	0.0	W/14685292-14686914	AT2G34810.1  CDS  gene_syn F19I3.4, F19I3_4  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_process response to wounding|GO:0009611|16021335|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16021335|IEP  go_function electron carrier activity|GO:0009055||ISS  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; INVOLVED IN: response to jasmonic acid stimulus, response to wounding; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT1G30720.1); Has 2655 Blast hits to 2608 proteins in 447 species: Archae - 16; Bacteria - 1026; Metazoa - 12; Fungi - 1075; Plants - 330; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink).  protein_id AT2G34810.1p  transcript_id AT2G34810.1  protein_id AT2G34810.1p  transcript_id AT2G34810.1  
At2g34820	chr2:014689632	0.0	W/14689632-14690312,14690400-14690594	AT2G34820.1  CDS  gene_syn F19I3.5, F19I3_5  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT1G30670.1); Has 426 Blast hits to 426 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 426; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G34820.1p  transcript_id AT2G34820.1  protein_id AT2G34820.1p  transcript_id AT2G34820.1  
At2g34825	chr2:014691411	0.0	W/14691411-14691629	AT2G34825.1  CDS  gene_syn RALF-LIKE 20, RALFL20  gene RALFL20  function Rapid alkalinization factor (RALF) family protein. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  go_component apoplast|GO:0048046|12611624|ISS  go_process cell-cell signaling|GO:0007267|12611624|ISS  go_function signal transducer activity|GO:0004871|12611624|TAS  product RALFL20 (RALF-LIKE 20); signal transducer  note RALF-LIKE 20 (RALFL20); FUNCTIONS IN: signal transducer activity; INVOLVED IN: cell-cell signaling; LOCATED IN: apoplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32885.1); Has 16 Blast hits to 16 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G34825.1p  transcript_id AT2G34825.1  protein_id AT2G34825.1p  transcript_id AT2G34825.1  
At2g34830	chr2:014695816	0.0	C/14695816-14696378,14695018-14695158,14693839-14694418	AT2G34830.1  CDS  gene_syn AtWRKY35, F19I3.6, F19I3_6, MEE24, WRKY DNA-BINDING PROTEIN 35, WRKY DNA-binding protein 35, WRKY35, maternal effect embryo arrest 24  gene WRKY35  function member of WRKY Transcription Factor; Group II-e  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_process pollen development|GO:0009555|19237690|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY35 (WRKY DNA-binding protein 35); transcription factor  note WRKY DNA-binding protein 35 (WRKY35); FUNCTIONS IN: transcription factor activity; INVOLVED IN: embryonic development ending in seed dormancy, regulation of transcription, DNA-dependent, pollen development; LOCATED IN: nucleus; EXPRESSED IN: shoot apex, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY group Iie (InterPro:IPR017412); BEST Arabidopsis thaliana protein match is: WRKY14; transcription factor (TAIR:AT1G30650.1); Has 3788 Blast hits to 1857 proteins in 156 species: Archae - 0; Bacteria - 12; Metazoa - 161; Fungi - 58; Plants - 1942; Viruses - 0; Other Eukaryotes - 1615 (source: NCBI BLink).  protein_id AT2G34830.1p  transcript_id AT2G34830.1  protein_id AT2G34830.1p  transcript_id AT2G34830.1  
At2g34835	chr2:014701502	0.0	C/14701502-14701886	AT2G34835.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.6e-32 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea)  
At2g34840	chr2:014702603	0.0	W/14702603-14702776,14702869-14702958,14703042-14703193,14703287-14703422,14703512-14703667,14703831-14703910,14704072-14704165	AT2G34840.1  CDS  gene_syn F19I3.7, F19I3_7  go_component COPI vesicle coat|GO:0030126||IEA  go_process retrograde vesicle-mediated transport, Golgi to ER|GO:0006890||IEA  go_function structural molecule activity|GO:0005198||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_process retrograde vesicle-mediated transport, Golgi to ER|GO:0006890||ISS  go_function protein transporter activity|GO:0008565||ISS  product coatomer protein epsilon subunit family protein / COPE family protein  note coatomer protein epsilon subunit family protein / COPE family protein; FUNCTIONS IN: protein transporter activity, protein binding, structural molecule activity, binding; INVOLVED IN: retrograde vesicle-mediated transport, Golgi to ER; LOCATED IN: COPI vesicle coat; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Coatomer, epsilon subunit (InterPro:IPR006822); BEST Arabidopsis thaliana protein match is: coatomer protein epsilon subunit family protein / COPE family protein (TAIR:AT1G30630.1); Has 333 Blast hits to 333 proteins in 133 species: Archae - 0; Bacteria - 7; Metazoa - 149; Fungi - 69; Plants - 65; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT2G34840.1p  transcript_id AT2G34840.1  protein_id AT2G34840.1p  transcript_id AT2G34840.1  
At2g34840	chr2:014702932	0.0	W/14702932-14702958,14703042-14703193,14703287-14703422,14703512-14703667,14703831-14703910,14704072-14704165	AT2G34840.2  CDS  gene_syn F19I3.7, F19I3_7  go_component COPI vesicle coat|GO:0030126||IEA  go_process retrograde vesicle-mediated transport, Golgi to ER|GO:0006890||IEA  go_function structural molecule activity|GO:0005198||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_process retrograde vesicle-mediated transport, Golgi to ER|GO:0006890||ISS  go_function protein transporter activity|GO:0008565||ISS  product coatomer protein epsilon subunit family protein / COPE family protein  note coatomer protein epsilon subunit family protein / COPE family protein; FUNCTIONS IN: protein transporter activity, protein binding, structural molecule activity, binding; INVOLVED IN: retrograde vesicle-mediated transport, Golgi to ER; LOCATED IN: COPI vesicle coat; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Coatomer, epsilon subunit (InterPro:IPR006822); BEST Arabidopsis thaliana protein match is: coatomer protein epsilon subunit family protein / COPE family protein (TAIR:AT1G30630.1); Has 315 Blast hits to 315 proteins in 124 species: Archae - 0; Bacteria - 7; Metazoa - 148; Fungi - 55; Plants - 63; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT2G34840.2p  transcript_id AT2G34840.2  protein_id AT2G34840.2p  transcript_id AT2G34840.2  
At2g34850	chr2:014705578	0.0	C/14705578-14705768,14705345-14705474,14705123-14705267,14704792-14705036	AT2G34850.1  CDS  gene_syn F19I3.8, F19I3_8, MEE25, maternal effect embryo arrest 25  gene MEE25  go_function catalytic activity|GO:0003824||IEA  go_function UDP-glucose 4-epimerase activity|GO:0003978||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  go_component cellular_component|GO:0005575||ND  go_process nucleotide-sugar metabolic process|GO:0009225||ISS  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process pollen tube development|GO:0048868|19237690|IMP  go_function catalytic activity|GO:0003824||ISS  product MEE25 (maternal effect embryo arrest 25); UDP-glucose 4-epimerase/ binding / catalytic/ coenzyme binding  note maternal effect embryo arrest 25 (MEE25); FUNCTIONS IN: coenzyme binding, UDP-glucose 4-epimerase activity, binding, catalytic activity; INVOLVED IN: embryonic development ending in seed dormancy, pollen tube development, nucleotide-sugar metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886); BEST Arabidopsis thaliana protein match is: MUR4 (MURUS 4); UDP-arabinose 4-epimerase/ catalytic (TAIR:AT1G30620.3); Has 13676 Blast hits to 13676 proteins in 1524 species: Archae - 298; Bacteria - 7060; Metazoa - 352; Fungi - 149; Plants - 411; Viruses - 13; Other Eukaryotes - 5393 (source: NCBI BLink).  protein_id AT2G34850.1p  transcript_id AT2G34850.1  protein_id AT2G34850.1p  transcript_id AT2G34850.1  
At2g34860	chr2:014708380	0.0	W/14708380-14708437,14708518-14708627,14709002-14709170,14709491-14709583,14709674-14709804	AT2G34860.1  CDS  gene_syn EDA3, F19I3.9, F19I3_9, embryo sac development arrest 3  gene EDA3  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_process megagametogenesis|GO:0009561|15634699|IMP  product EDA3 (embryo sac development arrest 3); heat shock protein binding / unfolded protein binding  note embryo sac development arrest 3 (EDA3); FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: megagametogenesis; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, cysteine-rich region (InterPro:IPR001305); Has 481 Blast hits to 481 proteins in 149 species: Archae - 26; Bacteria - 225; Metazoa - 10; Fungi - 2; Plants - 96; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT2G34860.1p  transcript_id AT2G34860.1  protein_id AT2G34860.1p  transcript_id AT2G34860.1  
At2g34860	chr2:014708380	0.0	W/14708380-14708437,14708518-14708627,14709002-14709170,14709491-14709583,14709674-14709804	AT2G34860.2  CDS  gene_syn EDA3, F19I3.9, F19I3_9, embryo sac development arrest 3  gene EDA3  go_component chloroplast|GO:0009507|18431481|IDA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_process megagametogenesis|GO:0009561|15634699|IMP  product EDA3 (embryo sac development arrest 3); heat shock protein binding / unfolded protein binding  note embryo sac development arrest 3 (EDA3); FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: megagametogenesis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, cysteine-rich region (InterPro:IPR001305); Has 481 Blast hits to 481 proteins in 149 species: Archae - 26; Bacteria - 225; Metazoa - 10; Fungi - 2; Plants - 96; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT2G34860.2p  transcript_id AT2G34860.2  protein_id AT2G34860.2p  transcript_id AT2G34860.2  
At2g34870	chr2:014710819	0.0	W/14710819-14711169	AT2G34870.1  CDS  gene_syn F19I3.10, F19I3_10, MEE26, maternal effect embryo arrest 26  gene MEE26  go_component endomembrane system|GO:0012505||IEA  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function molecular_function|GO:0003674||ND  product MEE26 (maternal effect embryo arrest 26)  note maternal effect embryo arrest 26 (MEE26); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G02670.1); Has 2269 Blast hits to 1369 proteins in 180 species: Archae - 4; Bacteria - 117; Metazoa - 953; Fungi - 132; Plants - 446; Viruses - 277; Other Eukaryotes - 340 (source: NCBI BLink).  protein_id AT2G34870.1p  transcript_id AT2G34870.1  protein_id AT2G34870.1p  transcript_id AT2G34870.1  
At2g34880	chr2:014716602	0.0	C/14716602-14716634,14716082-14716129,14715771-14715818,14715598-14715675,14715029-14715511,14713742-14713969,14712592-14713654,14712399-14712502,14712124-14712309,14711880-14712029	AT2G34880.1  CDS  gene_syn F19I3.11, F19I3_11, MEE27, maternal effect embryo arrest 27  gene MEE27  go_component nucleus|GO:0005634||IEA  go_process pollen development|GO:0009555|19237690|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MEE27 (maternal effect embryo arrest 27); transcription factor  note maternal effect embryo arrest 27 (MEE27); FUNCTIONS IN: transcription factor activity; INVOLVED IN: embryonic development ending in seed dormancy, pollen development, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), FY-rich, C-terminal (InterPro:IPR003889), FY-rich, N-terminal (InterPro:IPR003888), Transcription factor jumonji, JmjN (InterPro:IPR003349), Zinc finger, C5HC2-type (InterPro:IPR004198), FY-rich, C-terminal subgroup (InterPro:IPR018516), Transcription factor jumonji (InterPro:IPR013129), FY-rich, N-terminal subgroup (InterPro:IPR018518); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT1G30810.1); Has 1517 Blast hits to 1108 proteins in 134 species: Archae - 0; Bacteria - 0; Metazoa - 928; Fungi - 312; Plants - 155; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT2G34880.1p  transcript_id AT2G34880.1  protein_id AT2G34880.1p  transcript_id AT2G34880.1  
At2g34890	chr2:014721154	0.0	C/14721154-14721271,14720990-14721069,14720817-14720903,14720685-14720735,14720490-14720607,14720289-14720410,14720126-14720209,14720004-14720054,14719853-14719915,14719650-14719766,14719508-14719570,14719350-14719439,14719228-14719266,14718837-14719150,14718719-14718767,14718468-14718642,14718195-14718367	AT2G34890.1  CDS  gene_syn F19I3.12, F19I3_12  go_component endomembrane system|GO:0012505||IEA  go_process pyrimidine nucleotide biosynthetic process|GO:0006221||IEA  go_process pyrimidine ribonucleotide metabolic process|GO:0009218||IEA  go_function catalytic activity|GO:0003824||IEA  go_function CTP synthase activity|GO:0003883||IEA  go_function CTP synthase activity|GO:0003883||ISS  product CTP synthase, putative / UTP--ammonia ligase, putative  note CTP synthase, putative / UTP--ammonia ligase, putative; FUNCTIONS IN: CTP synthase activity, catalytic activity; INVOLVED IN: pyrimidine ribonucleotide metabolic process, pyrimidine nucleotide biosynthetic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), CTP synthase (InterPro:IPR004468), CTP synthase, N-terminal (InterPro:IPR017456), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: CTP synthase, putative / UTP--ammonia ligase, putative (TAIR:AT1G30820.1); Has 8047 Blast hits to 8014 proteins in 1727 species: Archae - 149; Bacteria - 2986; Metazoa - 227; Fungi - 172; Plants - 87; Viruses - 0; Other Eukaryotes - 4426 (source: NCBI BLink).  protein_id AT2G34890.1p  transcript_id AT2G34890.1  protein_id AT2G34890.1p  transcript_id AT2G34890.1  
At2g34900	chr2:014724771	0.0	C/14724771-14724800,14724519-14724596,14724186-14724401,14724012-14724110,14723853-14723911,14723616-14723766,14723333-14723530	AT2G34900.2  CDS  gene_syn F19I3.13, F19I3_13, GLOBAL TRANSCRIPTION FACTOR GROUP E1, GTE01, GTE1, IMB1, IMBIBITION-INDUCIBLE 1  gene IMB1  function Encodes a member of the BET subgroup of bromodomain proteins, a novel class of putative transcription factors. Its expression is induced during seed imbibition and downregulated during germination. Seeds of a loss-of-function mutant allele, imb1, show impaired cotyledon greening during germination in abscisic acid (ABA) and express higher levels of ABI5 protein than the wild type. Moreover, imb1 seeds are deficient in the phytochrome A (phyA)-mediated very-low-fluence response of germination.  go_component nucleus|GO:0005634|12969431|IDA  go_process positive regulation of seed germination|GO:0010030|12969431|IMP  go_function DNA binding|GO:0003677||ISS  product IMB1 (IMBIBITION-INDUCIBLE 1); DNA binding  note IMBIBITION-INDUCIBLE 1 (IMB1); FUNCTIONS IN: DNA binding; INVOLVED IN: positive regulation of seed germination; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain, conserved site (InterPro:IPR018359), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: GTE6 (GENERAL TRANSCRIPTION FACTOR GROUP E6); DNA binding / H3/H4 histone acetyltransferase (TAIR:AT3G52280.1); Has 5173 Blast hits to 4017 proteins in 195 species: Archae - 0; Bacteria - 13; Metazoa - 3510; Fungi - 753; Plants - 288; Viruses - 0; Other Eukaryotes - 609 (source: NCBI BLink).  protein_id AT2G34900.2p  transcript_id AT2G34900.2  protein_id AT2G34900.2p  transcript_id AT2G34900.2  
At2g34900	chr2:014725545	0.0	C/14725545-14725562,14725055-14725183,14724771-14724983,14724519-14724596,14724186-14724401,14724012-14724110,14723853-14723911,14723616-14723766,14723333-14723530	AT2G34900.1  CDS  gene_syn F19I3.13, F19I3_13, GLOBAL TRANSCRIPTION FACTOR GROUP E1, GTE01, GTE1, IMB1, IMBIBITION-INDUCIBLE 1  gene IMB1  function Encodes a member of the BET subgroup of bromodomain proteins, a novel class of putative transcription factors. Its expression is induced during seed imbibition and downregulated during germination. Seeds of a loss-of-function mutant allele, imb1, show impaired cotyledon greening during germination in abscisic acid (ABA) and express higher levels of ABI5 protein than the wild type. Moreover, imb1 seeds are deficient in the phytochrome A (phyA)-mediated very-low-fluence response of germination.  go_component nucleus|GO:0005634|12969431|IDA  go_process positive regulation of seed germination|GO:0010030|12969431|IMP  go_function DNA binding|GO:0003677||ISS  product IMB1 (IMBIBITION-INDUCIBLE 1); DNA binding  note IMBIBITION-INDUCIBLE 1 (IMB1); FUNCTIONS IN: DNA binding; INVOLVED IN: positive regulation of seed germination; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GTE6 (InterPro:IPR017413), Bromodomain, conserved site (InterPro:IPR018359), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: GTE6 (GENERAL TRANSCRIPTION FACTOR GROUP E6); DNA binding / H3/H4 histone acetyltransferase (TAIR:AT3G52280.1); Has 5287 Blast hits to 4123 proteins in 198 species: Archae - 2; Bacteria - 15; Metazoa - 3572; Fungi - 760; Plants - 303; Viruses - 0; Other Eukaryotes - 635 (source: NCBI BLink).  protein_id AT2G34900.1p  transcript_id AT2G34900.1  protein_id AT2G34900.1p  transcript_id AT2G34900.1  
At2g34910	chr2:014726900	0.0	W/14726900-14727766	AT2G34910.1  CDS  gene_syn F19I3.14, F19I3_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30850.1); Has 25 Blast hits to 25 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G34910.1p  transcript_id AT2G34910.1  protein_id AT2G34910.1p  transcript_id AT2G34910.1  
At2g34920	chr2:014730088	0.0	C/14730088-14730816,14729882-14729997,14729222-14729797,14728880-14729144,14728607-14728755,14728375-14728498	AT2G34920.1  CDS  gene_syn EDA18, F19I3.15, F19I3_15, embryo sac development arrest 18  gene EDA18  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process embryo sac development|GO:0009553|15634699|IMP  go_process pollen development|GO:0009555|19237690|IMP  product EDA18 (embryo sac development arrest 18); protein binding / zinc ion binding  note embryo sac development arrest 18 (EDA18); FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: embryo sac development, pollen development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G30860.1); Has 1829 Blast hits to 1816 proteins in 174 species: Archae - 3; Bacteria - 22; Metazoa - 1291; Fungi - 36; Plants - 233; Viruses - 41; Other Eukaryotes - 203 (source: NCBI BLink).  protein_id AT2G34920.1p  transcript_id AT2G34920.1  protein_id AT2G34920.1p  transcript_id AT2G34920.1  
At2g34925	chr2:014734270	0.0	W/14734270-14734536	AT2G34925.1  CDS  gene_syn CLAVATA3/ESR-RELATED 42, CLE42  gene CLE42  function Belongs to a large gene family, called CLE for CLAVATA3/ESR-related, encoding small peptides with conserved carboxyl termini  go_component endomembrane system|GO:0012505||IEA  product CLE42 (CLAVATA3/ESR-RELATED 42)  note CLAVATA3/ESR-RELATED 42 (CLE42); LOCATED IN: endomembrane system; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G34925.1p  transcript_id AT2G34925.1  protein_id AT2G34925.1p  transcript_id AT2G34925.1  
At2g34930	chr2:014737169	0.0	C/14737169-14739886	AT2G34930.1  CDS  gene_syn F19I3.16, F19I3_16  go_component cell wall|GO:0005618|15593128|IDA  go_process defense response|GO:0006952||ISS  go_process signal transduction|GO:0007165|11751054|IC  go_process defense response to fungus|GO:0050832|15923325|IMP  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product disease resistance family protein  note disease resistance family protein; FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction, defense response to fungus, defense response; LOCATED IN: cell wall; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP7 (Receptor Like Protein 7); kinase/ protein binding (TAIR:AT1G47890.1); Has 88357 Blast hits to 22227 proteins in 858 species: Archae - 52; Bacteria - 5071; Metazoa - 30462; Fungi - 1074; Plants - 44968; Viruses - 2; Other Eukaryotes - 6728 (source: NCBI BLink).  protein_id AT2G34930.1p  transcript_id AT2G34930.1  protein_id AT2G34930.1p  transcript_id AT2G34930.1  
At2g34940	chr2:014740497	0.0	W/14740497-14740794,14740951-14741637,14741727-14741815,14741887-14741956,14742028-14742111,14742191-14742267,14742353-14742434,14742515-14742597,14742676-14742739,14742828-14742956,14743028-14743134,14743228-14743314	AT2G34940.1  CDS  gene_syn F19I3.17, F19I3_17  go_function calcium ion binding|GO:0005509||IEA  go_component integral to plasma membrane|GO:0005887||ISS  go_component Golgi transport complex|GO:0017119|10888666|IPI  go_process protein targeting to vacuole|GO:0006623|10561538|TAS  go_process protein targeting to vacuole|GO:0006623|10871276|ISS  product vacuolar sorting receptor, putative  note vacuolar sorting receptor, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: protein targeting to vacuole; LOCATED IN: integral to plasma membrane, Golgi transport complex; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-like calcium-binding (InterPro:IPR001881), Growth factor, receptor (InterPro:IPR009030); BEST Arabidopsis thaliana protein match is: vacuolar sorting receptor, putative (TAIR:AT1G30900.1); Has 9390 Blast hits to 4743 proteins in 196 species: Archae - 0; Bacteria - 100; Metazoa - 8560; Fungi - 5; Plants - 215; Viruses - 0; Other Eukaryotes - 510 (source: NCBI BLink).  protein_id AT2G34940.1p  transcript_id AT2G34940.1  protein_id AT2G34940.1p  transcript_id AT2G34940.1  
At2g34950	chr2:014743475	0.0	C/14743475-14743548	AT2G34950.1  tRNA  gene_syn 17686.TRNA-THR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Thr (anticodon: AGT)  transcript_id AT2G34950.1  
At2g34960	chr2:014744175	0.0	C/14744175-14745884	AT2G34960.1  CDS  gene_syn CAT5, CATIONIC AMINO ACID TRANSPORTER 5, F19I3.19, F19I3_19  gene CAT5  function Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Mediates efficient uptake of Lys, Arg and Glu in a yeast system. Localized to the plasma membrane.  go_component plasma membrane|GO:0005886|15377779|IDA  go_process L-arginine import|GO:0043091|15377779|IGI  go_process L-glutamate import|GO:0051938|15377779|IGI  go_function L-glutamate transmembrane transporter activity|GO:0005313|15377779|IGI  go_function arginine transmembrane transporter activity|GO:0015181|15377779|IGI  go_function L-lysine transmembrane transporter activity|GO:0015189|15377779|IGI  go_function cationic amino acid transmembrane transporter activity|GO:0015326||ISS  product CAT5 (CATIONIC AMINO ACID TRANSPORTER 5); L-glutamate transmembrane transporter/ L-lysine transmembrane transporter/ arginine transmembrane transporter/ cationic amino acid transmembrane transporter  note CATIONIC AMINO ACID TRANSPORTER 5 (CAT5); FUNCTIONS IN: L-lysine transmembrane transporter activity, arginine transmembrane transporter activity, cationic amino acid transmembrane transporter activity, L-glutamate transmembrane transporter activity; INVOLVED IN: L-glutamate import, L-arginine import; LOCATED IN: plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cationic amino acid transporter (InterPro:IPR015606), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease-associated region (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: CAT8 (CATIONIC AMINO ACID TRANSPORTER 8); basic amino acid transmembrane transporter/ cationic amino acid transmembrane transporter (TAIR:AT1G17120.1); Has 16863 Blast hits to 16759 proteins in 1249 species: Archae - 309; Bacteria - 12768; Metazoa - 1596; Fungi - 981; Plants - 202; Viruses - 1; Other Eukaryotes - 1006 (source: NCBI BLink).  protein_id AT2G34960.1p  transcript_id AT2G34960.1  protein_id AT2G34960.1p  transcript_id AT2G34960.1  
At2g34970	chr2:014746340	0.0	W/14746340-14748532	AT2G34970.1  CDS  gene_syn F19I3.20, F19I3_20  go_process biosynthetic process|GO:0009058||IEA  go_function binding|GO:0005488||IEA  go_function transferase activity|GO:0016740||IEA  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_process regulation of translational initiation|GO:0006446||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein  note eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein; FUNCTIONS IN: binding, transferase activity, translation initiation factor activity, nucleotidyltransferase activity; INVOLVED IN: biosynthetic process, regulation of translational initiation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), eIF4-gamma/eIF5/eIF2-epsilon (InterPro:IPR003307), Bacterial transferase hexapeptide repeat (InterPro:IPR001451), Armadillo-type fold (InterPro:IPR016024), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein (TAIR:AT4G18300.1); Has 5595 Blast hits to 5485 proteins in 894 species: Archae - 338; Bacteria - 1966; Metazoa - 1127; Fungi - 322; Plants - 228; Viruses - 0; Other Eukaryotes - 1614 (source: NCBI BLink).  protein_id AT2G34970.1p  transcript_id AT2G34970.1  protein_id AT2G34970.1p  transcript_id AT2G34970.1  
At2g34980	chr2:014748967	0.0	W/14748967-14749878	AT2G34980.1  CDS  gene_syn F19I3.21, F19I3_21, SETH1  gene SETH1  function Encodes a putative phosphatidylinositol-glycan synthase subunit C gene. It is involved in the first step of the glycosylphosphatidylinositol (GPI) biosynthetic pathway.  go_component glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex|GO:0000506|14671020|TAS  go_component membrane|GO:0016020|14671020|TAS  go_process GPI anchor biosynthetic process|GO:0006506|14671020|TAS  go_process GPI anchor biosynthetic process|GO:0006506||ISS  go_process pollen germination|GO:0009846|14671020|IMP  go_process pollen tube growth|GO:0009860|14671020|IMP  go_function transferase activity|GO:0016740||ISS  go_function phosphatidylinositol N-acetylglucosaminyltransferase activity|GO:0017176|14671020|TAS  product SETH1; phosphatidylinositol N-acetylglucosaminyltransferase/ transferase  note SETH1; FUNCTIONS IN: transferase activity, phosphatidylinositol N-acetylglucosaminyltransferase activity; INVOLVED IN: pollen germination, GPI anchor biosynthetic process, pollen tube growth; LOCATED IN: glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex, membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol N-acetylglucosaminyltransferase (InterPro:IPR009450); Has 247 Blast hits to 247 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 107; Fungi - 78; Plants - 16; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT2G34980.1p  transcript_id AT2G34980.1  protein_id AT2G34980.1p  transcript_id AT2G34980.1  
At2g34985	chr2:014750064	0.0	W/14750064-14750134	AT2G34985.1  tRNA  gene_syn 17686.TRNA-THR-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Thr (anticodon: CGT)  transcript_id AT2G34985.1  
At2g34990	chr2:014750260	0.0	C/14750260-14751168	AT2G34990.1  CDS  gene_syn F19I3.22, F19I3_22  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G35000.1); Has 5649 Blast hits to 5631 proteins in 203 species: Archae - 0; Bacteria - 2; Metazoa - 1960; Fungi - 357; Plants - 2477; Viruses - 24; Other Eukaryotes - 829 (source: NCBI BLink).  protein_id AT2G34990.1p  transcript_id AT2G34990.1  protein_id AT2G34990.1p  transcript_id AT2G34990.1  
At2g35000	chr2:014751809	0.0	C/14751809-14752945	AT2G35000.1  CDS  gene_syn F19I3.23, F19I3_23  function E3 ligase-like protein induced by chitin oligomers.  go_component endomembrane system|GO:0012505||IEA  go_process response to chitin|GO:0010200|15923325|IEP  go_process defense response to fungus|GO:0050832|15923325|IMP  go_function ubiquitin-protein ligase activity|GO:0004842|15644464|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: defense response to fungus, response to chitin; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, hypocotyl, root, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G34990.1); Has 6198 Blast hits to 6180 proteins in 213 species: Archae - 0; Bacteria - 6; Metazoa - 2089; Fungi - 503; Plants - 2564; Viruses - 32; Other Eukaryotes - 1004 (source: NCBI BLink).  protein_id AT2G35000.1p  transcript_id AT2G35000.1  protein_id AT2G35000.1p  transcript_id AT2G35000.1  
At2g35010	chr2:014754398	0.0	W/14754398-14754641,14754960-14755025,14755119-14755169,14755261-14755340,14755631-14755675,14755790-14755888	AT2G35010.1  CDS  gene_syn ATO1, Arabidopsis thioredoxin O1, F19I3.24, F19I3_24  gene ATO1  go_process cell redox homeostasis|GO:0045454||IEA  product ATO1 (Arabidopsis thioredoxin O1)  note Arabidopsis thioredoxin O1 (ATO1); INVOLVED IN: cell redox homeostasis; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATO2 (Arabidopsis thioredoxin o2) (TAIR:AT1G31020.1); Has 8995 Blast hits to 8975 proteins in 1620 species: Archae - 115; Bacteria - 4117; Metazoa - 932; Fungi - 451; Plants - 763; Viruses - 3; Other Eukaryotes - 2614 (source: NCBI BLink).  protein_id AT2G35010.1p  transcript_id AT2G35010.1  protein_id AT2G35010.1p  transcript_id AT2G35010.1  
At2g35010	chr2:014754398	0.0	W/14754398-14754641,14754960-14755025,14755119-14755169,14755261-14755340,14755631-14755675,14755790-14755888	AT2G35010.2  CDS  gene_syn ATO1, Arabidopsis thioredoxin O1, F19I3.24, F19I3_24  gene ATO1  go_process cell redox homeostasis|GO:0045454||IEA  product ATO1 (Arabidopsis thioredoxin O1)  note Arabidopsis thioredoxin O1 (ATO1); INVOLVED IN: cell redox homeostasis; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATO2 (Arabidopsis thioredoxin o2) (TAIR:AT1G31020.1); Has 8974 Blast hits to 8956 proteins in 1617 species: Archae - 115; Bacteria - 4106; Metazoa - 928; Fungi - 445; Plants - 763; Viruses - 3; Other Eukaryotes - 2614 (source: NCBI BLink).  protein_id AT2G35010.2p  transcript_id AT2G35010.2  protein_id AT2G35010.2p  transcript_id AT2G35010.2  
At2g35020	chr2:014756803	0.0	W/14756803-14756997,14757175-14757229,14757315-14757466,14758142-14758181,14758359-14758451,14758536-14758651,14758740-14758814,14758934-14758973,14759062-14759144,14759234-14759311,14759445-14759588,14759781-14759848,14759931-14760045,14760153-14760309,14760380-14760477	AT2G35020.1  CDS  gene_syn F19I3.25, F19I3_25  go_process metabolic process|GO:0008152||IEA  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function nucleotidyltransferase activity|GO:0016779||ISS  product UTP--glucose-1-phosphate uridylyltransferase family protein  note UTP--glucose-1-phosphate uridylyltransferase family protein; FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UTP--glucose-1-phosphate uridylyltransferase (InterPro:IPR002618); BEST Arabidopsis thaliana protein match is: UDP-N-acetylglucosamine pyrophosphorylase-related (TAIR:AT1G31070.2); Has 1002 Blast hits to 999 proteins in 241 species: Archae - 0; Bacteria - 147; Metazoa - 371; Fungi - 175; Plants - 144; Viruses - 0; Other Eukaryotes - 165 (source: NCBI BLink).  protein_id AT2G35020.1p  transcript_id AT2G35020.1  protein_id AT2G35020.1p  transcript_id AT2G35020.1  
At2g35030	chr2:014761080	0.0	C/14761080-14762963	AT2G35030.1  CDS  gene_syn F19I3.26, F19I3_26  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G02750.1); Has 17568 Blast hits to 5632 proteins in 198 species: Archae - 9; Bacteria - 11; Metazoa - 193; Fungi - 146; Plants - 16807; Viruses - 0; Other Eukaryotes - 402 (source: NCBI BLink).  protein_id AT2G35030.1p  transcript_id AT2G35030.1  protein_id AT2G35030.1p  transcript_id AT2G35030.1  
At2g35035	chr2:014764947	0.0	C/14764947-14765045,14764796-14764861,14764636-14764710,14764493-14764537,14764125-14764358,14763890-14763972,14763624-14763792,14763387-14763500	AT2G35035.1  CDS  gene_syn URED, urease accessory protein D  gene URED  function Encodes a urease accessory protein which is essential for the activation of plant urease.  go_function nickel ion binding|GO:0016151||IEA  go_component cellular_component|GO:0005575||ND  go_process nitrogen compound metabolic process|GO:0006807|16244137|IMP  go_process nitrogen compound metabolic process|GO:0006807||ISS  go_process positive regulation of metalloenzyme activity|GO:0048554|16244137|IMP  go_function nickel ion binding|GO:0016151||ISS  product URED (urease accessory protein D); nickel ion binding  note urease accessory protein D (URED); FUNCTIONS IN: nickel ion binding; INVOLVED IN: nitrogen compound metabolic process, positive regulation of metalloenzyme activity; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Urease accessory protein UreD (InterPro:IPR002669); Has 1150 Blast hits to 1150 proteins in 422 species: Archae - 14; Bacteria - 863; Metazoa - 9; Fungi - 56; Plants - 17; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink).  protein_id AT2G35035.1p  transcript_id AT2G35035.1  protein_id AT2G35035.1p  transcript_id AT2G35035.1  
At2g35040	chr2:014768162	0.0	C/14768162-14768269,14767969-14768068,14767796-14767871,14767596-14767692,14767337-14767439,14767096-14767229,14766822-14766999,14766579-14766736,14766239-14766448,14765821-14766168,14765605-14765731,14765347-14765498	AT2G35040.1  CDS  gene_syn F19I3.27, F19I3_27  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_function catalytic activity|GO:0003824||IEA  go_function IMP cyclohydrolase activity|GO:0003937||IEA  go_function phosphoribosylaminoimidazolecarboxamide formyltransferase activity|GO:0004643||IEA  go_component stromule|GO:0010319|16923014|IDA  go_process purine nucleotide biosynthetic process|GO:0006164||ISS  go_process response to cold|GO:0009409|16923014|IEP  go_function IMP cyclohydrolase activity|GO:0003937||ISS  go_function phosphoribosylaminoimidazolecarboxamide formyltransferase activity|GO:0004643||ISS  product AICARFT/IMPCHase bienzyme family protein  note AICARFT/IMPCHase bienzyme family protein; FUNCTIONS IN: phosphoribosylaminoimidazolecarboxamide formyltransferase activity, IMP cyclohydrolase activity, catalytic activity; INVOLVED IN: response to cold, purine nucleotide biosynthetic process; LOCATED IN: stromule, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: AICARFT/IMPCHase bienzyme, formylation region (InterPro:IPR013982), AICARFT/IMPCHase bienzyme (InterPro:IPR002695), MGS-like (InterPro:IPR011607); Has 7969 Blast hits to 7713 proteins in 1373 species: Archae - 42; Bacteria - 2843; Metazoa - 317; Fungi - 123; Plants - 34; Viruses - 4; Other Eukaryotes - 4606 (source: NCBI BLink).  protein_id AT2G35040.1p  transcript_id AT2G35040.1  protein_id AT2G35040.1p  transcript_id AT2G35040.1  
At2g35050	chr2:014769708	0.0	W/14769708-14772548,14772651-14772710,14773145-14773297,14773623-14773783,14773867-14774014,14774103-14774225,14774398-14774485,14774597-14774796	AT2G35050.1  CDS  gene_syn F19I3.28, F19I3_28  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, protein kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G16270.1); Has 90000 Blast hits to 87522 proteins in 3538 species: Archae - 49; Bacteria - 7549; Metazoa - 40295; Fungi - 7270; Plants - 18458; Viruses - 417; Other Eukaryotes - 15962 (source: NCBI BLink).  protein_id AT2G35050.1p  transcript_id AT2G35050.1  protein_id AT2G35050.1p  transcript_id AT2G35050.1  
At2g35060	chr2:014778035	0.0	C/14778035-14778184,14777714-14777942,14777394-14777639,14777258-14777308,14776905-14777165,14776638-14776805,14775775-14776552,14775184-14775682	AT2G35060.2  CDS  gene_syn F19I3.29, F19I3_29, KUP11  gene KUP11  function potassium transporter  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process potassium ion transport|GO:0006813||ISS  go_process pollen development|GO:0009555|19237690|IMP  go_function potassium ion transmembrane transporter activity|GO:0015079||ISS  product KUP11; potassium ion transmembrane transporter  note KUP11; FUNCTIONS IN: potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport, pollen development; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Potassium uptake protein, kup (InterPro:IPR018519), K+ potassium transporter (InterPro:IPR003855); BEST Arabidopsis thaliana protein match is: KUP10; potassium ion transmembrane transporter (TAIR:AT1G31120.1); Has 1988 Blast hits to 1971 proteins in 584 species: Archae - 13; Bacteria - 1382; Metazoa - 0; Fungi - 57; Plants - 416; Viruses - 4; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT2G35060.2p  transcript_id AT2G35060.2  protein_id AT2G35060.2p  transcript_id AT2G35060.2  
At2g35060	chr2:014778035	0.0	C/14778035-14778184,14777717-14777942,14777394-14777639,14777258-14777308,14776905-14777165,14776638-14776805,14775775-14776552,14775184-14775682	AT2G35060.1  CDS  gene_syn F19I3.29, F19I3_29, KUP11  gene KUP11  function potassium transporter  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process potassium ion transport|GO:0006813||ISS  go_process pollen development|GO:0009555|19237690|IMP  go_function potassium ion transmembrane transporter activity|GO:0015079||ISS  product KUP11; potassium ion transmembrane transporter  note KUP11; FUNCTIONS IN: potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport, pollen development; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Potassium uptake protein, kup (InterPro:IPR018519), K+ potassium transporter (InterPro:IPR003855); BEST Arabidopsis thaliana protein match is: KUP10; potassium ion transmembrane transporter (TAIR:AT1G31120.1); Has 1992 Blast hits to 1975 proteins in 584 species: Archae - 13; Bacteria - 1382; Metazoa - 0; Fungi - 57; Plants - 420; Viruses - 4; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT2G35060.1p  transcript_id AT2G35060.1  protein_id AT2G35060.1p  transcript_id AT2G35060.1  
At2g35070	chr2:014783518	0.0	W/14783518-14783736,14784069-14784166,14784238-14784274,14784386-14784508	AT2G35070.1  CDS  gene_syn T4C15.27  go_component mitochondrion|GO:0005739||IEA  go_process pollen development|GO:0009555|19237690|IMP  go_process pollen tube development|GO:0048868|19237690|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen tube development, pollen development; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35090.1); Has 35 Blast hits to 35 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35070.1p  transcript_id AT2G35070.1  protein_id AT2G35070.1p  transcript_id AT2G35070.1  
At2g35075	chr2:014786682	0.0	W/14786682-14786772,14786859-14786942,14786989-14787093,14787189-14787227,14787281-14787406,14787453-14787759,14787843-14788008,14788085-14788160,14788274-14788353,14788550-14788747	AT2G35075.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 19 Blast hits to 10 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35075.1p  transcript_id AT2G35075.1  protein_id AT2G35075.1p  transcript_id AT2G35075.1  
At2g35080	chr2:014791406	0.0	C/14791406-14791448,14791166-14791189,14790827-14791080,14790631-14790658,14789931-14789998,14789630-14789641,14789245-14789499	AT2G35080.1  CDS  gene_syn T4C15.25, T4C15_25  go_component cytoplasm|GO:0005737||IEA  go_process translation|GO:0006412||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function ATP binding|GO:0005524||IEA  product ATP binding / aminoacyl-tRNA ligase/ nucleotide binding  note ATP binding / aminoacyl-tRNA ligase/ nucleotide binding; FUNCTIONS IN: aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (D, K and N)-like (InterPro:IPR018150); BEST Arabidopsis thaliana protein match is: ATP binding / aminoacyl-tRNA ligase/ aspartic-type endopeptidase/ nucleotide binding (TAIR:AT3G29750.1); Has 10 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35080.1p  transcript_id AT2G35080.1  protein_id AT2G35080.1p  transcript_id AT2G35080.1  
At2g35080	chr2:014791406	0.0	C/14791406-14791448,14791166-14791189,14790847-14791080,14790313-14790334,14790111-14790172,14789931-14789998,14789630-14789641,14789245-14789499	AT2G35080.2  CDS  gene_syn T4C15.25, T4C15_25  go_component cytoplasm|GO:0005737||IEA  go_process translation|GO:0006412||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function ATP binding|GO:0005524||IEA  product ATP binding / aminoacyl-tRNA ligase/ nucleotide binding  note ATP binding / aminoacyl-tRNA ligase/ nucleotide binding; FUNCTIONS IN: aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (D, K and N)-like (InterPro:IPR018150); BEST Arabidopsis thaliana protein match is: ATP binding / aminoacyl-tRNA ligase/ aspartic-type endopeptidase/ nucleotide binding (TAIR:AT3G29750.1).  protein_id AT2G35080.2p  transcript_id AT2G35080.2  protein_id AT2G35080.2p  transcript_id AT2G35080.2  
At2g35090	chr2:014792187	0.0	W/14792187-14792405,14792558-14792655,14792728-14792764,14792908-14793030	AT2G35090.1  CDS  gene_syn T4C15.24, T4C15_24  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35070.1); Has 35 Blast hits to 35 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35090.1p  transcript_id AT2G35090.1  protein_id AT2G35090.1p  transcript_id AT2G35090.1  
At2g35100	chr2:014794776	0.0	C/14794776-14795564,14794266-14794631,14793993-14794181	AT2G35100.1  CDS  gene_syn ARABINAN DEFICIENT 1, ARABINOSYLTRANSFERASE, ARAD1, T4C15.23, T4C15_23  gene ARAD1  function Putative glycosyltransferase, similar to other CAZy Family 47 proteins. The protein is predicted to be a type 2 membrane protein with a signal anchor and is predicted to be targeted to the secretory pathway and to have a single transmembrane helix near the N terminus; hence, the protein has the features expected for a type II membrane protein targeted to the Golgi vesicles. The gene was shown to be expressed in all tissues but particularly in vascular tissues of leaves and stems.  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process pectin biosynthetic process|GO:0045489|16377743|IMP  go_function catalytic activity|GO:0003824||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757|16377743|ISS  product ARAD1 (ARABINAN DEFICIENT 1); catalytic/ transferase, transferring glycosyl groups  note ARABINAN DEFICIENT 1 (ARAD1); FUNCTIONS IN: transferase activity, transferring glycosyl groups, catalytic activity; INVOLVED IN: pectin biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: ARAD2 (ARABINAN DEFICIENT 2); catalytic (TAIR:AT5G44930.2); Has 761 Blast hits to 757 proteins in 86 species: Archae - 0; Bacteria - 8; Metazoa - 166; Fungi - 4; Plants - 524; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT2G35100.1p  transcript_id AT2G35100.1  protein_id AT2G35100.1p  transcript_id AT2G35100.1  
At2g35110	chr2:014803124	0.0	C/14803124-14803525,14802956-14803030,14802495-14802575,14802207-14802287,14802010-14802092,14801830-14801914,14801618-14801743,14801376-14801483,14800807-14801081,14800560-14800692,14800211-14800321,14800023-14800101,14799681-14799874,14799317-14799462,14799144-14799225,14798952-14799062,14798436-14798561,14798207-14798346,14798013-14798109,14796578-14797794,14795970-14796495	AT2G35110.1  CDS  gene_syn GNARLED, GRL, NAP1, NAPP, NCK-ASSOCIATED PROTEIN 1, T4C15.22, T4C15_22  gene GRL  function Component of the WAVE protein complex which act as activators of ARP2/3 complex involved in actin nucleation. Required for trichome morphogenesis. Mutant displays distorted trichomes, a phenotype that can be phenocopied by treatment of WT plants with actin-interacting drugs.  go_component SCAR complex|GO:0031209|15296761|TAS  go_process actin filament organization|GO:0007015|10572033|IMP  go_process multidimensional cell growth|GO:0009825|12690443|IMP  go_process trichome morphogenesis|GO:0010090|15296761|IMP  go_process trichome morphogenesis|GO:0010090|8313475|IMP  go_process actin nucleation|GO:0045010|15296761|TAS  go_function transcription activator activity|GO:0016563|15296760|IDA  product GRL (GNARLED); transcription activator  note GNARLED (GRL); FUNCTIONS IN: transcription activator activity; INVOLVED IN: actin nucleation, multidimensional cell growth, actin filament organization, trichome morphogenesis; LOCATED IN: SCAR complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 2741 Blast hits to 668 proteins in 113 species: Archae - 0; Bacteria - 46; Metazoa - 830; Fungi - 114; Plants - 23; Viruses - 0; Other Eukaryotes - 1728 (source: NCBI BLink).  protein_id AT2G35110.1p  transcript_id AT2G35110.1  protein_id AT2G35110.1p  transcript_id AT2G35110.1  
At2g35110	chr2:014803124	0.0	C/14803124-14803525,14802956-14803030,14802495-14802575,14802207-14802287,14802010-14802092,14801830-14801914,14801618-14801743,14801376-14801483,14801037-14801081,14800807-14800949,14800560-14800692,14800211-14800321,14800023-14800101,14799681-14799874,14799317-14799462,14799144-14799225,14798952-14799062,14798436-14798561,14798207-14798346,14798013-14798109,14796578-14797794,14795970-14796495	AT2G35110.2  CDS  gene_syn GNARLED, GRL, NAP1, NAPP, NCK-ASSOCIATED PROTEIN 1, T4C15.22, T4C15_22  gene GRL  function Component of the WAVE protein complex which act as activators of ARP2/3 complex involved in actin nucleation. Required for trichome morphogenesis. Mutant displays distorted trichomes, a phenotype that can be phenocopied by treatment of WT plants with actin-interacting drugs.  go_component SCAR complex|GO:0031209|15296761|TAS  go_process actin filament organization|GO:0007015|10572033|IMP  go_process multidimensional cell growth|GO:0009825|12690443|IMP  go_process trichome morphogenesis|GO:0010090|15296761|IMP  go_process trichome morphogenesis|GO:0010090|8313475|IMP  go_process actin nucleation|GO:0045010|15296761|TAS  go_function transcription activator activity|GO:0016563|15296760|IDA  product GRL (GNARLED); transcription activator  note GNARLED (GRL); FUNCTIONS IN: transcription activator activity; INVOLVED IN: actin nucleation, multidimensional cell growth, actin filament organization, trichome morphogenesis; LOCATED IN: SCAR complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 2762 Blast hits to 671 proteins in 113 species: Archae - 0; Bacteria - 46; Metazoa - 831; Fungi - 112; Plants - 23; Viruses - 0; Other Eukaryotes - 1750 (source: NCBI BLink).  protein_id AT2G35110.2p  transcript_id AT2G35110.2  protein_id AT2G35110.2p  transcript_id AT2G35110.2  
At2g35120	chr2:014807196	0.0	C/14807196-14807274,14806439-14806701,14805913-14806041	AT2G35120.1  CDS  gene_syn T4C15.21, T4C15_21  go_component mitochondrion|GO:0005739|17137349|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_process glycine catabolic process|GO:0006546||IEA  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component glycine cleavage complex|GO:0005960||ISS  go_process glycine catabolic process|GO:0006546||ISS  go_function glycine dehydrogenase (decarboxylating) activity|GO:0004375||ISS  product glycine cleavage system H protein, mitochondrial, putative  note glycine cleavage system H protein, mitochondrial, putative; FUNCTIONS IN: glycine dehydrogenase (decarboxylating) activity, ATP binding; INVOLVED IN: glycine catabolic process; LOCATED IN: mitochondrion, glycine cleavage complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), Single hybrid motif (InterPro:IPR011053), Glycine cleavage H-protein (InterPro:IPR002930), Glycine cleavage H-protein, subgroup (InterPro:IPR017453); BEST Arabidopsis thaliana protein match is: glycine cleavage system H protein, mitochondrial, putative (TAIR:AT1G32470.1); Has 4762 Blast hits to 4762 proteins in 1230 species: Archae - 82; Bacteria - 2410; Metazoa - 143; Fungi - 86; Plants - 158; Viruses - 0; Other Eukaryotes - 1883 (source: NCBI BLink).  protein_id AT2G35120.1p  transcript_id AT2G35120.1  protein_id AT2G35120.1p  transcript_id AT2G35120.1  
At2g35130	chr2:014810163	0.0	C/14810163-14810164,14809694-14809878,14809379-14809611,14809039-14809288,14808782-14808939,14808497-14808702,14808288-14808412,14807589-14808205	AT2G35130.1  CDS  gene_syn T4C15.20, T4C15_20  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G02860.1); Has 23205 Blast hits to 6013 proteins in 186 species: Archae - 4; Bacteria - 18; Metazoa - 577; Fungi - 479; Plants - 21074; Viruses - 0; Other Eukaryotes - 1053 (source: NCBI BLink).  protein_id AT2G35130.1p  transcript_id AT2G35130.1  protein_id AT2G35130.1p  transcript_id AT2G35130.1  
At2g35140	chr2:014813990	0.0	W/14813990-14814289,14814368-14814484,14814586-14816808	AT2G35140.1  CDS  gene_syn T4C15.19, T4C15_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Development and cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11000.2); Has 160 Blast hits to 150 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G35140.1p  transcript_id AT2G35140.1  protein_id AT2G35140.1p  transcript_id AT2G35140.1  
At2g35140	chr2:014813990	0.0	W/14813990-14814289,14814368-14814484,14814586-14816808	AT2G35140.2  CDS  gene_syn T4C15.19, T4C15_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Development and cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11000.2); Has 159 Blast hits to 149 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G35140.2p  transcript_id AT2G35140.2  protein_id AT2G35140.2p  transcript_id AT2G35140.2  
At2g35140	chr2:014813990	0.0	W/14813990-14814289,14814368-14814484,14814586-14816808	AT2G35140.3  CDS  gene_syn T4C15.19, T4C15_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Development and cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11000.2).  protein_id AT2G35140.3p  transcript_id AT2G35140.3  protein_id AT2G35140.3p  transcript_id AT2G35140.3  
At2g35150	chr2:014817220	0.0	C/14817220-14818191	AT2G35150.1  CDS  gene_syn EXL1, EXORDIUM LIKE 1, T4C15.11  gene EXL1  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product EXL1 (EXORDIUM LIKE 1)  note EXORDIUM LIKE 1 (EXL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Phosphate-induced protein 1 conserved region (InterPro:IPR006766); BEST Arabidopsis thaliana protein match is: EXL5 (EXORDIUM LIKE 5) (TAIR:AT2G17230.1); Has 231 Blast hits to 231 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 229; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35150.1p  transcript_id AT2G35150.1  protein_id AT2G35150.1p  transcript_id AT2G35150.1  
At2g35155	chr2:014820827	0.0	C/14820827-14821330,14820588-14820731,14820272-14820512,14819644-14820144,14819209-14819558	AT2G35155.1  CDS  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product catalytic  note catalytic; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase, trypsin-like serine and cysteine (InterPro:IPR009003); BEST Arabidopsis thaliana protein match is: catalytic (TAIR:AT5G45030.2); Has 61 Blast hits to 61 proteins in 17 species: Archae - 0; Bacteria - 18; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35155.1p  transcript_id AT2G35155.1  protein_id AT2G35155.1p  transcript_id AT2G35155.1  
At2g35160	chr2:014823562	0.0	W/14823562-14825946	AT2G35160.1  CDS  gene_syn SET DOMAIN-CONTAINING PROTEIN 9, SGD9, SU(VAR)3-9 HOMOLOG 5, SUVH5, T4C15.17, T4C15_17  gene SUVH5  function Encodes SU(var)3-9 homologue 5 (SUVH5). SUVH5 has histone methyltransferase (MTase) activity in vitro and contributes to the maintenance of H3 mK9 (methylation of histone H3 at Lys-9) and CMT3-mediated non-CG methylation in vivo. This is a member of a subfamily of SET proteins that shares a conserved SRA domain.  go_component nucleus|GO:0005634||IEA  go_process response to chitin|GO:0010200|17722694|IEP  go_process maintenance of DNA methylation|GO:0010216|16582009|IGI  go_process histone methylation|GO:0016571|16582009|IDA  go_process chromatin silencing by small RNA|GO:0031048|16582009|IEP  go_process regulation of gene expression, epigenetic|GO:0040029||TAS  go_function histone methyltransferase activity|GO:0042054|16582009|IDA  go_function histone methyltransferase activity|GO:0042054||ISS  product SUVH5 (SU(VAR)3-9 HOMOLOG 5); histone methyltransferase  note SU(VAR)3-9 HOMOLOG 5 (SUVH5); FUNCTIONS IN: histone methyltransferase activity; INVOLVED IN: maintenance of DNA methylation, regulation of gene expression, epigenetic, histone methylation, response to chitin, chromatin silencing by small RNA; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), SRA-YDG (InterPro:IPR003105), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Pre-SET zinc-binding region (InterPro:IPR007728), Post-SET zinc-binding region (InterPro:IPR003616); BEST Arabidopsis thaliana protein match is: SUVH6; methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding / methyltransferase (TAIR:AT2G22740.2); Has 3954 Blast hits to 3801 proteins in 335 species: Archae - 0; Bacteria - 282; Metazoa - 2032; Fungi - 349; Plants - 585; Viruses - 0; Other Eukaryotes - 706 (source: NCBI BLink).  protein_id AT2G35160.1p  transcript_id AT2G35160.1  protein_id AT2G35160.1p  transcript_id AT2G35160.1  
At2g35170	chr2:014827615	0.0	W/14827615-14828636,14829089-14829347,14829432-14829605	AT2G35170.1  CDS  gene_syn T4C15.16, T4C15_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related  note MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: MORN motif (InterPro:IPR003409); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17080.1); Has 22094 Blast hits to 5283 proteins in 348 species: Archae - 0; Bacteria - 2252; Metazoa - 3766; Fungi - 100; Plants - 822; Viruses - 0; Other Eukaryotes - 15154 (source: NCBI BLink).  protein_id AT2G35170.1p  transcript_id AT2G35170.1  protein_id AT2G35170.1p  transcript_id AT2G35170.1  
At2g35180	chr2:014829865	0.0	C/14829865-14830139	AT2G35180.1  pseudogenic_transcript  pseudo  gene_syn T4C15.15  note pseudogene, 60S ribosomal protein L37a, blastp match of 96% identity and 1.7e-35 P-value to GP|20161109|dbj|BAB90039.1||AP003335 putative 60S ribosomal protein L37a {Oryza sativa (japonica cultivar-group)}  
At2g35190	chr2:014831087	0.0	W/14831087-14831163,14831257-14831349,14831424-14831555,14831633-14831727,14831852-14831931,14832083-14832139,14832272-14832364,14832468-14832542,14832884-14832979	AT2G35190.1  CDS  gene_syn ATNPSN11, NOVEL PLANT SNARE 11, NPSN11, NSPN11, T4C15.14, T4C15_14  gene NPSN11  function plant-specific SNARE located in cell plate of dividing cells. cofractionates with the cytokinesis-specific syntaxin, KNOLLE, which is required for the formation of the cell plate.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cell plate|GO:0009504|12068098|IDA  go_process cytokinesis|GO:0000910|12068098|TAS  go_function SNAP receptor activity|GO:0005484|12068098|ISS  go_function protein transporter activity|GO:0008565||ISS  product NPSN11 (NOVEL PLANT SNARE 11); SNAP receptor/ protein transporter  note NOVEL PLANT SNARE 11 (NPSN11); FUNCTIONS IN: protein transporter activity, SNAP receptor activity; INVOLVED IN: cytokinesis; LOCATED IN: plasma membrane, cell plate; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: NPSN13 (NOVEL PLANT SNARE 13) (TAIR:AT3G17440.1); Has 664 Blast hits to 609 proteins in 164 species: Archae - 10; Bacteria - 100; Metazoa - 121; Fungi - 50; Plants - 77; Viruses - 0; Other Eukaryotes - 306 (source: NCBI BLink).  protein_id AT2G35190.1p  transcript_id AT2G35190.1  protein_id AT2G35190.1p  transcript_id AT2G35190.1  
At2g35200	chr2:014833888	0.0	W/14833888-14834493	AT2G35200.1  CDS  gene_syn T4C15.13, T4C15_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32690.1); Has 19 Blast hits to 19 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35200.1p  transcript_id AT2G35200.1  protein_id AT2G35200.1p  transcript_id AT2G35200.1  
At2g35208	chr2:014835854	0.0	W/14835854-14836009	AT2G35208.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G35208.1p  transcript_id AT2G35208.1  protein_id AT2G35208.1p  transcript_id AT2G35208.1  
At2g35210	chr2:014836206	0.0	W/14836206-14836274,14836380-14836498,14836626-14837046,14837111-14837374,14837464-14837589,14837667-14837768,14837860-14837946	AT2G35210.1  CDS  gene_syn AGD10, MATERNAL EFFECT EMBRYO ARREST 28, MEE28, ROOT AND POLLEN ARFGAP, RPA, T4C15.12, T4C15_12  gene RPA  function A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.  go_function ARF GTPase activator activity|GO:0008060||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_process pollen development|GO:0009555|19237690|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function DNA binding|GO:0003677||ISS  product RPA (ROOT AND POLLEN ARFGAP); ARF GTPase activator/ DNA binding / zinc ion binding  note ROOT AND POLLEN ARFGAP (RPA); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: embryonic development ending in seed dormancy, pollen development; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: AGD9 (ARF-GAP DOMAIN 9); ARF GTPase activator/ DNA binding / zinc ion binding (TAIR:AT5G46750.1); Has 2758 Blast hits to 2604 proteins in 167 species: Archae - 0; Bacteria - 14; Metazoa - 1655; Fungi - 415; Plants - 293; Viruses - 0; Other Eukaryotes - 381 (source: NCBI BLink).  protein_id AT2G35210.1p  transcript_id AT2G35210.1  protein_id AT2G35210.1p  transcript_id AT2G35210.1  
At2g35210	chr2:014836206	0.0	W/14836206-14836274,14836380-14836498,14836626-14837046,14837111-14837374,14837464-14837589,14837677-14837768,14837860-14837884	AT2G35210.2  CDS  gene_syn AGD10, MATERNAL EFFECT EMBRYO ARREST 28, MEE28, ROOT AND POLLEN ARFGAP, RPA, T4C15.12, T4C15_12  gene RPA  function A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.  go_function ARF GTPase activator activity|GO:0008060||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_process pollen development|GO:0009555|19237690|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function DNA binding|GO:0003677||ISS  product RPA (ROOT AND POLLEN ARFGAP); ARF GTPase activator/ DNA binding / zinc ion binding  note ROOT AND POLLEN ARFGAP (RPA); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: embryonic development ending in seed dormancy, pollen development; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: AGD9 (ARF-GAP DOMAIN 9); ARF GTPase activator/ DNA binding / zinc ion binding (TAIR:AT5G46750.1); Has 2618 Blast hits to 2583 proteins in 165 species: Archae - 0; Bacteria - 0; Metazoa - 1548; Fungi - 405; Plants - 287; Viruses - 0; Other Eukaryotes - 378 (source: NCBI BLink).  protein_id AT2G35210.2p  transcript_id AT2G35210.2  protein_id AT2G35210.2p  transcript_id AT2G35210.2  
At2g35215	chr2:014839296	0.0	W/14839296-14839616	AT2G35215.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46770.1); Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35215.1p  transcript_id AT2G35215.1  protein_id AT2G35215.1p  transcript_id AT2G35215.1  
At2g35220	chr2:014840607	0.0	W/14840607-14840644	AT2G35220.1  tRNA  gene_syn 40426.TRNA-MET-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Met (anticodon: CAT)  transcript_id AT2G35220.1  
At2g35230	chr2:014842871	0.0	W/14842871-14844079	AT2G35230.1  CDS  gene_syn T4C15.10, T4C15_10  product VQ motif-containing protein  note VQ motif-containing protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G32610.2); Has 28728 Blast hits to 17816 proteins in 872 species: Archae - 22; Bacteria - 1825; Metazoa - 14492; Fungi - 4795; Plants - 3651; Viruses - 530; Other Eukaryotes - 3413 (source: NCBI BLink).  protein_id AT2G35230.1p  transcript_id AT2G35230.1  protein_id AT2G35230.1p  transcript_id AT2G35230.1  
At2g35230	chr2:014843192	0.0	W/14843192-14844079	AT2G35230.2  CDS  gene_syn T4C15.10, T4C15_10  product VQ motif-containing protein  note VQ motif-containing protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G32610.2); Has 24118 Blast hits to 15201 proteins in 781 species: Archae - 10; Bacteria - 1493; Metazoa - 12105; Fungi - 3801; Plants - 3311; Viruses - 481; Other Eukaryotes - 2917 (source: NCBI BLink).  protein_id AT2G35230.2p  transcript_id AT2G35230.2  protein_id AT2G35230.2p  transcript_id AT2G35230.2  
At2g35240	chr2:014845874	0.0	C/14845874-14846262,14845690-14845787,14845529-14845594,14845099-14845244	AT2G35240.1  CDS  gene_syn T4C15.9, T4C15_9  go_component mitochondrion|GO:0005739|11743114|IDA  product plastid developmental protein DAG, putative  note plastid developmental protein DAG, putative; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: plastid developmental protein DAG, putative (TAIR:AT1G32580.1); Has 151 Blast hits to 138 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35240.1p  transcript_id AT2G35240.1  protein_id AT2G35240.1p  transcript_id AT2G35240.1  
At2g35250	chr2:014848591	0.0	C/14848591-14848662,14848420-14848491,14847939-14848085,14847590-14847754,14847440-14847493,14847166-14847312,14846662-14847033	AT2G35250.1  CDS  gene_syn T4C15.8, T4C15_8  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38255.1); Has 405 Blast hits to 386 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 10; Plants - 391; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35250.1p  transcript_id AT2G35250.1  protein_id AT2G35250.1p  transcript_id AT2G35250.1  
At2g35260	chr2:014849642	0.0	W/14849642-14850002,14850132-14850283,14850373-14850468,14850550-14850612,14850698-14850766,14850861-14850963,14851050-14851115,14851261-14851349,14851452-14851601	AT2G35260.1  CDS  gene_syn T4C15.7, T4C15_7  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17840.1); Has 21 Blast hits to 21 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35260.1p  transcript_id AT2G35260.1  protein_id AT2G35260.1p  transcript_id AT2G35260.1  
At2g35270	chr2:014857021	0.0	W/14857021-14857878	AT2G35270.1  CDS  gene_syn T4C15.6, T4C15_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product DNA-binding protein-related  note DNA-binding protein-related; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: DNA-binding protein-related (TAIR:AT4G17800.1); Has 703 Blast hits to 690 proteins in 103 species: Archae - 2; Bacteria - 85; Metazoa - 123; Fungi - 11; Plants - 445; Viruses - 5; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT2G35270.1p  transcript_id AT2G35270.1  protein_id AT2G35270.1p  transcript_id AT2G35270.1  
At2g35280	chr2:014859709	0.0	C/14859709-14860200	AT2G35280.1  CDS  gene_syn T4C15.5, T4C15_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G30430.1); Has 20 Blast hits to 20 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35280.1p  transcript_id AT2G35280.1  protein_id AT2G35280.1p  transcript_id AT2G35280.1  
At2g35290	chr2:014861635	0.0	C/14861635-14862000	AT2G35290.1  CDS  gene_syn T4C15.4, T4C15_4  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; Has 25 Blast hits to 25 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35290.1p  transcript_id AT2G35290.1  protein_id AT2G35290.1p  transcript_id AT2G35290.1  
At2g35300	chr2:014863066	0.0	C/14863066-14863359	AT2G35300.1  CDS  gene_syn T4C15.3, T4C15_3  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||ISS  go_process pollen tube development|GO:0048868|19237690|IMP  go_function molecular_function|GO:0003674||ND  product late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein  note late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy, pollen tube development; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant (LEA) group 1 (InterPro:IPR005513); BEST Arabidopsis thaliana protein match is: late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein (TAIR:AT1G32560.1); Has 110 Blast hits to 110 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 110; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35300.1p  transcript_id AT2G35300.1  protein_id AT2G35300.1p  transcript_id AT2G35300.1  
At2g35310	chr2:014864943	0.0	W/14864943-14865041,14865469-14865763,14865853-14866088,14866168-14866404	AT2G35310.1  CDS  gene_syn T4C15.2, T4C15_2  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcriptional factor B3 family protein  note transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT2G16210.1); Has 136 Blast hits to 124 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35310.1p  transcript_id AT2G35310.1  protein_id AT2G35310.1p  transcript_id AT2G35310.1  
At2g35320	chr2:014868157	0.0	C/14868157-14868387,14867893-14868060,14867720-14867813,14867469-14867639,14867074-14867333	AT2G35320.1  CDS  gene_syn ATEYA, Arabidopsis thaliana EYES ABSENT homolog, T4C15.1, T4C15_1  gene ATEYA  function homologue of the animal Eyes Absent genes. encodes a tyrosine-specific phosphatase. the protein sequence lacks the cys-containing signature of the classical tyrosine phosphatases. belongs to the aspartate-based phosphatases. The enzyme activity is strictly metal-dependent.  go_component cellular_component|GO:0005575||ND  go_process protein amino acid dephosphorylation|GO:0006470|15641802|TAS  go_function protein tyrosine phosphatase activity, metal-dependent|GO:0030946|15641802|IDA  product ATEYA (Arabidopsis thaliana EYES ABSENT homolog); protein tyrosine phosphatase, metal-dependent  note Arabidopsis thaliana EYES ABSENT homolog (ATEYA); FUNCTIONS IN: protein tyrosine phosphatase activity, metal-dependent; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EYA (InterPro:IPR006545); Has 339 Blast hits to 338 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 306; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G35320.1p  transcript_id AT2G35320.1  protein_id AT2G35320.1p  transcript_id AT2G35320.1  
At2g35330	chr2:014869179	0.0	W/14869179-14870879,14871158-14871673	AT2G35330.1  CDS  gene_syn T32F12.29, T32F12_29  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G32530.1); Has 68844 Blast hits to 39840 proteins in 1831 species: Archae - 547; Bacteria - 7716; Metazoa - 34278; Fungi - 4820; Plants - 2628; Viruses - 370; Other Eukaryotes - 18485 (source: NCBI BLink).  protein_id AT2G35330.1p  transcript_id AT2G35330.1  protein_id AT2G35330.1p  transcript_id AT2G35330.1  
At2g35340	chr2:014872728	0.0	W/14872728-14872824,14872907-14873037,14873160-14873351,14873471-14873542,14873688-14873774,14874122-14874155,14874265-14874319,14874628-14874687,14874787-14874858,14875045-14875108,14875246-14875325,14875450-14875517,14875624-14875678,14875787-14875844,14875929-14875997,14876172-14876240,14876583-14876672,14877006-14877092,14877207-14877322,14877403-14877469,14877555-14878595,14878674-14878736,14878816-14878939,14879013-14879113,14879201-14879263,14879389-14879461,14879569-14879615	AT2G35340.1  CDS  gene_syn MEE29, T32F12.28, T32F12_28, maternal effect embryo arrest 29  gene MEE29  go_component endomembrane system|GO:0012505||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function ATP-dependent RNA helicase activity|GO:0004004||ISS  product MEE29 (maternal effect embryo arrest 29); ATP binding / ATP-dependent RNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding  note maternal effect embryo arrest 29 (MEE29); FUNCTIONS IN: helicase activity, ATP-dependent RNA helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated region (InterPro:IPR007502), Region of unknown function DUF1605 (InterPro:IPR011709), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ESP3 (ENHANCED SILENCING PHENOTYPE 3); ATP binding / ATP-dependent RNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding (TAIR:AT1G32490.1); Has 23820 Blast hits to 17421 proteins in 1302 species: Archae - 30; Bacteria - 2786; Metazoa - 9098; Fungi - 2039; Plants - 827; Viruses - 1435; Other Eukaryotes - 7605 (source: NCBI BLink).  protein_id AT2G35340.1p  transcript_id AT2G35340.1  protein_id AT2G35340.1p  transcript_id AT2G35340.1  
At2g35345	chr2:014880274	0.0	C/14880274-14880573	AT2G35345.1  CDS  product unknown protein  note unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35345.1p  transcript_id AT2G35345.1  protein_id AT2G35345.1p  transcript_id AT2G35345.1  
At2g35350	chr2:014882263	0.0	C/14882263-14884116,14881898-14882011,14881565-14881820,14881360-14881487	AT2G35350.1  CDS  gene_syn PLL1, POLTERGEIST LIKE 1, T32F12.27, T32F12_27  gene PLL1  function Encodes a protein most similar to the POLTERGEIST locus. Double mutant analysis of loss of function alleles indicate PLL1 functions redundantly with POL to regulate meristem size and pedicel length. Acts in a dose dependent manner with POL to suppress the clv1, clv2 and clv3 phenotypes.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_process unidimensional cell growth|GO:0009826|16112663|IGI  go_process meristem structural organization|GO:0009933|16112663|IGI  go_process maintenance of meristem identity|GO:0010074|17079273|IGI  go_process regulation of transcription|GO:0045449|17079273|IGI  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PLL1 (POLTERGEIST LIKE 1); catalytic/ protein serine/threonine phosphatase  note POLTERGEIST LIKE 1 (PLL1); FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: meristem structural organization, N-terminal protein myristoylation, unidimensional cell growth, maintenance of meristem identity, regulation of transcription; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: POL (poltergeist); protein serine/threonine phosphatase (TAIR:AT2G46920.2); Has 1776 Blast hits to 1712 proteins in 181 species: Archae - 2; Bacteria - 2; Metazoa - 471; Fungi - 182; Plants - 783; Viruses - 3; Other Eukaryotes - 333 (source: NCBI BLink).  protein_id AT2G35350.1p  transcript_id AT2G35350.1  protein_id AT2G35350.1p  transcript_id AT2G35350.1  
At2g35360	chr2:014890680	0.0	C/14890680-14890799,14890462-14890594,14890286-14890362,14890131-14890209,14889921-14890030,14889694-14889758,14889311-14889404	AT2G35360.1  CDS  gene_syn T32F12.26, T32F12_26  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product ubiquitin family protein  note ubiquitin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); Has 59 Blast hits to 59 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 38; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT2G35360.1p  transcript_id AT2G35360.1  protein_id AT2G35360.1p  transcript_id AT2G35360.1  
At2g35370	chr2:014891239	0.0	W/14891239-14891347,14891427-14891515,14891662-14891832,14891922-14892050	AT2G35370.1  CDS  gene_syn GDCH, GLYCINE DECARBOXYLASE COMPLEX H PROTEIN  gene GDCH  function Encodes glycine decarboxylase complex H protein. Involved in photorespiration.  go_component nucleus|GO:0005634|14617066|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component mitochondrion|GO:0005739||TAS  go_process photorespiration|GO:0009853||TAS  go_process glycine decarboxylation via glycine cleavage system|GO:0019464||TAS  go_function glycine dehydrogenase (decarboxylating) activity|GO:0004375||TAS  product GDCH; glycine dehydrogenase (decarboxylating)  note GDCH; FUNCTIONS IN: glycine dehydrogenase (decarboxylating) activity; INVOLVED IN: glycine decarboxylation via glycine cleavage system, photorespiration; LOCATED IN: thylakoid, mitochondrion, nucleus, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), Single hybrid motif (InterPro:IPR011053), Glycine cleavage H-protein (InterPro:IPR002930), Glycine cleavage H-protein, subgroup (InterPro:IPR017453); BEST Arabidopsis thaliana protein match is: glycine cleavage system H protein, mitochondrial, putative (TAIR:AT1G32470.1); Has 4744 Blast hits to 4744 proteins in 1229 species: Archae - 82; Bacteria - 2404; Metazoa - 143; Fungi - 84; Plants - 155; Viruses - 0; Other Eukaryotes - 1876 (source: NCBI BLink).  protein_id AT2G35370.1p  transcript_id AT2G35370.1  protein_id AT2G35370.1p  transcript_id AT2G35370.1  
At2g35380	chr2:014892636	0.0	W/14892636-14892860,14893070-14893261,14893365-14893958	AT2G35380.1  CDS  gene_syn T32F12.24, T32F12_24  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase 20 (PER20) (P20)  note peroxidase 20 (PER20) (P20); FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT1G44970.1); Has 2877 Blast hits to 2861 proteins in 200 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 61; Plants - 2783; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT2G35380.1p  transcript_id AT2G35380.1  protein_id AT2G35380.1p  transcript_id AT2G35380.1  
At2g35380	chr2:014893109	0.0	W/14893109-14893261,14893365-14893958	AT2G35380.2  CDS  gene_syn T32F12.24, T32F12_24  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase 20 (PER20) (P20)  note peroxidase 20 (PER20) (P20); FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT1G44970.1); Has 2813 Blast hits to 2805 proteins in 188 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 45; Plants - 2747; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT2G35380.2p  transcript_id AT2G35380.2  protein_id AT2G35380.2p  transcript_id AT2G35380.2  
At2g35382	chr2:014894380	0.0	C/14894380-14894455	AT2G35382.1  snoRNA  gene_syn 38795.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT2G35382.1  
At2g35384	chr2:014894549	0.0	C/14894549-14894627	AT2G35384.1  snoRNA  gene_syn 38795.SNORNA00002  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT2G35384.1  
At2g35387	chr2:014894718	0.0	C/14894718-14894796	AT2G35387.1  snoRNA  gene_syn 38795.SNORNA00003  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT2G35387.1  
At2g35390	chr2:014896685	0.0	C/14896685-14897098,14896430-14896573,14896168-14896335,14896013-14896082,14895812-14895893,14895528-14895708	AT2G35390.1  CDS  gene_syn AT2G35400, T32F12.23, T32F12_23  go_process nucleoside metabolic process|GO:0009116||IEA  go_process ribonucleoside monophosphate biosynthetic process|GO:0009156||IEA  go_process nucleotide biosynthetic process|GO:0009165||IEA  go_process cellular biosynthetic process|GO:0044249||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function ribose phosphate diphosphokinase activity|GO:0004749||IEA  go_process nucleotide biosynthetic process|GO:0009165||ISS  go_function ribose phosphate diphosphokinase activity|GO:0004749||ISS  product ribose-phosphate pyrophosphokinase 1 / phosphoribosyl diphosphate synthetase 1 (PRSI)  note ribose-phosphate pyrophosphokinase 1 / phosphoribosyl diphosphate synthetase 1 (PRSI); FUNCTIONS IN: magnesium ion binding, ribose phosphate diphosphokinase activity; INVOLVED IN: cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, LP.10 ten leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836), Phosphoribosyl pyrophosphokinase (InterPro:IPR005946), Phosphoribosyl pyrophosphate synthetase, conserved site (InterPro:IPR000842); BEST Arabidopsis thaliana protein match is: ribose-phosphate pyrophosphokinase 2 / phosphoribosyl diphosphate synthetase 2 (PRS2) (TAIR:AT1G32380.1); Has 8045 Blast hits to 7870 proteins in 1555 species: Archae - 173; Bacteria - 3337; Metazoa - 502; Fungi - 463; Plants - 123; Viruses - 7; Other Eukaryotes - 3440 (source: NCBI BLink).  protein_id AT2G35390.1p  transcript_id AT2G35390.1  protein_id AT2G35390.1p  transcript_id AT2G35390.1  
At2g35390	chr2:014897438	0.0	C/14897438-14897581,14896685-14897107,14896430-14896573,14896168-14896335,14896013-14896082,14895808-14895893	AT2G35390.3  CDS  gene_syn AT2G35400, T32F12.23, T32F12_23  go_component chloroplast|GO:0009507||IEA  go_process nucleoside metabolic process|GO:0009116||IEA  go_process ribonucleoside monophosphate biosynthetic process|GO:0009156||IEA  go_process nucleotide biosynthetic process|GO:0009165||IEA  go_process cellular biosynthetic process|GO:0044249||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function ribose phosphate diphosphokinase activity|GO:0004749||IEA  go_process nucleotide biosynthetic process|GO:0009165||ISS  go_function ribose phosphate diphosphokinase activity|GO:0004749||ISS  product ribose-phosphate pyrophosphokinase 1 / phosphoribosyl diphosphate synthetase 1 (PRSI)  note ribose-phosphate pyrophosphokinase 1 / phosphoribosyl diphosphate synthetase 1 (PRSI); FUNCTIONS IN: magnesium ion binding, ribose phosphate diphosphokinase activity; INVOLVED IN: cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, LP.10 ten leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836), Phosphoribosyl pyrophosphokinase (InterPro:IPR005946), Phosphoribosyl pyrophosphate synthetase, conserved site (InterPro:IPR000842); BEST Arabidopsis thaliana protein match is: ribose-phosphate pyrophosphokinase 2 / phosphoribosyl diphosphate synthetase 2 (PRS2) (TAIR:AT1G32380.1); Has 7797 Blast hits to 7637 proteins in 1553 species: Archae - 173; Bacteria - 3329; Metazoa - 492; Fungi - 450; Plants - 124; Viruses - 7; Other Eukaryotes - 3222 (source: NCBI BLink).  protein_id AT2G35390.3p  transcript_id AT2G35390.3  protein_id AT2G35390.3p  transcript_id AT2G35390.3  
At2g35390	chr2:014897438	0.0	C/14897438-14897581,14896685-14897107,14896430-14896573,14896168-14896335,14896013-14896082,14895812-14895893,14895528-14895708	AT2G35390.2  CDS  gene_syn AT2G35400, T32F12.23, T32F12_23  go_component chloroplast|GO:0009507||IEA  go_process nucleoside metabolic process|GO:0009116||IEA  go_process ribonucleoside monophosphate biosynthetic process|GO:0009156||IEA  go_process nucleotide biosynthetic process|GO:0009165||IEA  go_process cellular biosynthetic process|GO:0044249||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function ribose phosphate diphosphokinase activity|GO:0004749||IEA  go_process nucleotide biosynthetic process|GO:0009165||ISS  go_function ribose phosphate diphosphokinase activity|GO:0004749||ISS  product ribose-phosphate pyrophosphokinase 1 / phosphoribosyl diphosphate synthetase 1 (PRSI)  note ribose-phosphate pyrophosphokinase 1 / phosphoribosyl diphosphate synthetase 1 (PRSI); FUNCTIONS IN: magnesium ion binding, ribose phosphate diphosphokinase activity; INVOLVED IN: cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, LP.10 ten leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836), Phosphoribosyl pyrophosphokinase (InterPro:IPR005946), Phosphoribosyl pyrophosphate synthetase, conserved site (InterPro:IPR000842); BEST Arabidopsis thaliana protein match is: ribose-phosphate pyrophosphokinase 2 / phosphoribosyl diphosphate synthetase 2 (PRS2) (TAIR:AT1G32380.1); Has 8046 Blast hits to 7871 proteins in 1555 species: Archae - 173; Bacteria - 3337; Metazoa - 502; Fungi - 463; Plants - 124; Viruses - 7; Other Eukaryotes - 3440 (source: NCBI BLink).  protein_id AT2G35390.2p  transcript_id AT2G35390.2  protein_id AT2G35390.2p  transcript_id AT2G35390.2  
At2g35410	chr2:014898341	0.0	W/14898341-14898715,14898798-14898896,14899050-14899352,14899441-14899590	AT2G35410.1  CDS  gene_syn T32F12.21, T32F12_21  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||ISS  product 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative  note 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: thylakoid, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT4G09040.2); Has 19540 Blast hits to 13531 proteins in 594 species: Archae - 12; Bacteria - 1397; Metazoa - 10397; Fungi - 2454; Plants - 3010; Viruses - 0; Other Eukaryotes - 2270 (source: NCBI BLink).  protein_id AT2G35410.1p  transcript_id AT2G35410.1  protein_id AT2G35410.1p  transcript_id AT2G35410.1  
At2g35420	chr2:014899715	0.0	C/14899715-14900479	AT2G35420.1  CDS  gene_syn T32F12.20, T32F12_20  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: ATL1F; protein binding / zinc ion binding (TAIR:AT1G32361.1); Has 6157 Blast hits to 6141 proteins in 210 species: Archae - 0; Bacteria - 0; Metazoa - 2102; Fungi - 448; Plants - 2601; Viruses - 41; Other Eukaryotes - 965 (source: NCBI BLink).  protein_id AT2G35420.1p  transcript_id AT2G35420.1  protein_id AT2G35420.1p  transcript_id AT2G35420.1  
At2g35430	chr2:014901744	0.0	C/14901744-14902257,14901014-14901258	AT2G35430.1  CDS  gene_syn T32F12.19, T32F12_19  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product zinc finger (CCCH-type) family protein  note zinc finger (CCCH-type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein (TAIR:AT1G32360.1); Has 769 Blast hits to 632 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 343; Fungi - 68; Plants - 197; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink).  protein_id AT2G35430.1p  transcript_id AT2G35430.1  protein_id AT2G35430.1p  transcript_id AT2G35430.1  
At2g35450	chr2:014905137	0.0	C/14905137-14905361,14904909-14904977,14904711-14904790,14904311-14904410,14904172-14904225,14904018-14904095,14903832-14903929,14903680-14903737,14903468-14903589,14903201-14903357	AT2G35450.1  CDS  gene_syn AT2G35440, T32F12.17, T32F12_17  go_component chloroplast|GO:0009507|18431481|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity|GO:0016787||ISS  product catalytic/ hydrolase  note catalytic/ hydrolase; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amidohydrolase 2 (InterPro:IPR006992); Has 889 Blast hits to 889 proteins in 210 species: Archae - 0; Bacteria - 553; Metazoa - 5; Fungi - 4; Plants - 21; Viruses - 0; Other Eukaryotes - 306 (source: NCBI BLink).  protein_id AT2G35450.1p  transcript_id AT2G35450.1  protein_id AT2G35450.1p  transcript_id AT2G35450.1  
At2g35460	chr2:014905788	0.0	W/14905788-14906504	AT2G35460.1  CDS  gene_syn T32F12.16, T32F12_16  go_component cellular_component|GO:0005575||ND  product harpin-induced family protein / HIN1 family protein / harpin-responsive family protein  note harpin-induced family protein / HIN1 family protein / harpin-responsive family protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: NHL3 (TAIR:AT5G06320.1); Has 659 Blast hits to 659 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 659; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35460.1p  transcript_id AT2G35460.1  protein_id AT2G35460.1p  transcript_id AT2G35460.1  
At2g35470	chr2:014909420	0.0	C/14909420-14909720,14909266-14909310,14909014-14909171	AT2G35470.1  CDS  gene_syn T32F12.15, T32F12_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35470.1p  transcript_id AT2G35470.1  protein_id AT2G35470.1p  transcript_id AT2G35470.1  
At2g35480	chr2:014910530	0.0	W/14910530-14910660,14911313-14911769	AT2G35480.1  CDS  gene_syn T32F12.14, T32F12_14  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32260.1); Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35480.1p  transcript_id AT2G35480.1  protein_id AT2G35480.1p  transcript_id AT2G35480.1  
At2g35490	chr2:014913175	0.0	C/14913175-14913797,14912808-14913003,14912309-14912620	AT2G35490.1  CDS  gene_syn T32F12.13, T32F12_13  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_function structural molecule activity|GO:0005198||IEA  go_component plastoglobule|GO:0010287|16461379|IDA  go_process biological_process|GO:0008150||ND  go_function structural molecule activity|GO:0005198||ISS  product plastid-lipid associated protein PAP, putative  note plastid-lipid associated protein PAP, putative; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAP fibrillin (InterPro:IPR006843); BEST Arabidopsis thaliana protein match is: plastid-lipid associated protein PAP, putative (TAIR:AT4G22240.1); Has 293 Blast hits to 290 proteins in 66 species: Archae - 0; Bacteria - 78; Metazoa - 1; Fungi - 0; Plants - 205; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G35490.1p  transcript_id AT2G35490.1  protein_id AT2G35490.1p  transcript_id AT2G35490.1  
At2g35500	chr2:014914038	0.0	W/14914038-14914280,14914453-14914643,14914737-14914931,14915039-14915100,14915184-14915250,14915324-14915442,14915535-14915711,14915800-14915909	AT2G35500.1  CDS  gene_syn T32F12.12, T32F12_12  go_component chloroplast|GO:0009507|18431481|IDA  go_process aromatic amino acid family biosynthetic process|GO:0009073|1338949|TAS  product shikimate kinase-related  note shikimate kinase-related; INVOLVED IN: aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CS domain (InterPro:IPR007052), HSP20-like chaperone (InterPro:IPR008978), CS (InterPro:IPR017447); Has 282 Blast hits to 282 proteins in 67 species: Archae - 0; Bacteria - 111; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).  protein_id AT2G35500.1p  transcript_id AT2G35500.1  protein_id AT2G35500.1p  transcript_id AT2G35500.1  
At2g35510	chr2:014918093	0.0	C/14918093-14919198,14917723-14917967,14917353-14917432,14917084-14917251,14916898-14917005	AT2G35510.1  CDS  gene_syn SIMILAR TO RCD ONE 1, SRO1, T32F12.11, T32F12_11  gene SRO1  function Encodes a WWE domain-containing protein with 76% similarity to RCD1. The protein also contains a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation.  go_component nucleus|GO:0005634||IEA  go_function NAD+ ADP-ribosyltransferase activity|GO:0003950||IEA  product SRO1 (SIMILAR TO RCD ONE 1); NAD+ ADP-ribosyltransferase  note SIMILAR TO RCD ONE 1 (SRO1); FUNCTIONS IN: NAD+ ADP-ribosyltransferase activity; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WWE domain (InterPro:IPR004170), Poly(ADP-ribose) polymerase, catalytic region (InterPro:IPR012317); BEST Arabidopsis thaliana protein match is: RCD1 (RADICAL-INDUCED CELL DEATH1); protein binding (TAIR:AT1G32230.3); Has 124 Blast hits to 122 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 30; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT2G35510.1p  transcript_id AT2G35510.1  protein_id AT2G35510.1p  transcript_id AT2G35510.1  
At2g35520	chr2:014921587	0.0	W/14921587-14921670,14921764-14921811,14922189-14922279,14922414-14922457,14922574-14922657	AT2G35520.2  CDS  gene_syn DAD2, DEFENDER AGAINST CELL DEATH 2, T32F12.10, T32F12_10  gene DAD2  go_component cellular_component|GO:0005575||ND  go_process anti-apoptosis|GO:0006916||ISS  go_function molecular_function|GO:0003674||ND  product DAD2 (DEFENDER AGAINST CELL DEATH 2)  note DEFENDER AGAINST CELL DEATH 2 (DAD2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anti-apoptosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Defender against death DAD protein (InterPro:IPR003038); BEST Arabidopsis thaliana protein match is: ATDAD1 (DEFENDER AGAINST APOPTOTIC DEATH 1) (TAIR:AT1G32210.1); Has 338 Blast hits to 338 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 152; Fungi - 77; Plants - 74; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT2G35520.2p  transcript_id AT2G35520.2  protein_id AT2G35520.2p  transcript_id AT2G35520.2  
At2g35520	chr2:014921587	0.0	W/14921587-14921670,14921764-14921811,14922192-14922279,14922414-14922457,14922574-14922657	AT2G35520.1  CDS  gene_syn DAD2, DEFENDER AGAINST CELL DEATH 2, T32F12.10, T32F12_10  gene DAD2  go_component cellular_component|GO:0005575||ND  go_process anti-apoptosis|GO:0006916||ISS  go_function molecular_function|GO:0003674||ND  product DAD2 (DEFENDER AGAINST CELL DEATH 2)  note DEFENDER AGAINST CELL DEATH 2 (DAD2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anti-apoptosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Defender against death DAD protein (InterPro:IPR003038); BEST Arabidopsis thaliana protein match is: ATDAD1 (DEFENDER AGAINST APOPTOTIC DEATH 1) (TAIR:AT1G32210.1); Has 338 Blast hits to 338 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 152; Fungi - 77; Plants - 74; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT2G35520.1p  transcript_id AT2G35520.1  protein_id AT2G35520.1p  transcript_id AT2G35520.1  
At2g35530	chr2:014925939	0.0	C/14925939-14926025,14925675-14925731,14925517-14925594,14925270-14925359,14925119-14925178,14924850-14925019,14924623-14924677,14924202-14924232,14923829-14924103,14923677-14923754,14923477-14923602,14923280-14923402	AT2G35530.1  CDS  gene_syn T32F12.9, T32F12_9  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process transcription, DNA-dependent|GO:0006351||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  product bZIP transcription factor family protein  note bZIP transcription factor family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), G-box binding, MFMR (InterPro:IPR012900), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT1G32150.1); Has 10167 Blast hits to 6792 proteins in 489 species: Archae - 6; Bacteria - 876; Metazoa - 3669; Fungi - 1159; Plants - 2025; Viruses - 226; Other Eukaryotes - 2206 (source: NCBI BLink).  protein_id AT2G35530.1p  transcript_id AT2G35530.1  protein_id AT2G35530.1p  transcript_id AT2G35530.1  
At2g35540	chr2:014927158	0.0	W/14927158-14927532,14927578-14928930	AT2G35540.1  CDS  gene_syn T32F12.8, T32F12_8  go_function heat shock protein binding|GO:0031072||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35753.1); Has 6033 Blast hits to 5914 proteins in 1037 species: Archae - 37; Bacteria - 1958; Metazoa - 1561; Fungi - 317; Plants - 624; Viruses - 0; Other Eukaryotes - 1536 (source: NCBI BLink).  protein_id AT2G35540.1p  transcript_id AT2G35540.1  protein_id AT2G35540.1p  transcript_id AT2G35540.1  
At2g35550	chr2:014929526	0.0	W/14929526-14929612,14929890-14930618	AT2G35550.1  CDS  gene_syn ATBPC7, BASIC PENTACYSTEINE 7, BBR, BPC7, T32F12.7, T32F12_7  gene BPC7  go_component nucleus|GO:0005634|14731261|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|14731261|IPI  go_function DNA binding|GO:0003677|14731261|IPI  go_function transcription factor activity|GO:0003700|14731261|IPI  product BPC7 (BASIC PENTACYSTEINE 7); DNA binding / transcription factor  note BASIC PENTACYSTEINE 7 (BPC7); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: BPC2 (BASIC PENTACYSTEINE 2); DNA binding / transcription factor (TAIR:AT1G14685.3); Has 130 Blast hits to 130 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35550.1p  transcript_id AT2G35550.1  protein_id AT2G35550.1p  transcript_id AT2G35550.1  
At2g35550	chr2:014929938	0.0	W/14929938-14930618	AT2G35550.2  CDS  gene_syn ATBPC7, BASIC PENTACYSTEINE 7, BBR, BPC7, T32F12.7, T32F12_7  gene BPC7  go_component nucleus|GO:0005634|14731261|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|14731261|IPI  go_function DNA binding|GO:0003677|14731261|IPI  go_function transcription factor activity|GO:0003700|14731261|IPI  product BPC7 (BASIC PENTACYSTEINE 7); DNA binding / transcription factor  note BASIC PENTACYSTEINE 7 (BPC7); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: BPC2 (BASIC PENTACYSTEINE 2); DNA binding / transcription factor (TAIR:AT1G14685.3); Has 128 Blast hits to 128 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35550.2p  transcript_id AT2G35550.2  protein_id AT2G35550.2p  transcript_id AT2G35550.2  
At2g35550	chr2:014929938	0.0	W/14929938-14930618	AT2G35550.3  CDS  gene_syn ATBPC7, BASIC PENTACYSTEINE 7, BBR, BPC7, T32F12.7, T32F12_7  gene BPC7  go_component nucleus|GO:0005634|14731261|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|14731261|IPI  go_function DNA binding|GO:0003677|14731261|IPI  go_function transcription factor activity|GO:0003700|14731261|IPI  product BPC7 (BASIC PENTACYSTEINE 7); DNA binding / transcription factor  note BASIC PENTACYSTEINE 7 (BPC7); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: BPC2 (BASIC PENTACYSTEINE 2); DNA binding / transcription factor (TAIR:AT1G14685.3); Has 128 Blast hits to 128 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35550.3p  transcript_id AT2G35550.3  protein_id AT2G35550.3p  transcript_id AT2G35550.3  
At2g35550	chr2:014929938	0.0	W/14929938-14930618	AT2G35550.4  CDS  gene_syn ATBPC7, BASIC PENTACYSTEINE 7, BBR, BPC7, T32F12.7, T32F12_7  gene BPC7  go_component nucleus|GO:0005634|14731261|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|14731261|IPI  go_function DNA binding|GO:0003677|14731261|IPI  go_function transcription factor activity|GO:0003700|14731261|IPI  product BPC7 (BASIC PENTACYSTEINE 7); DNA binding / transcription factor  note BASIC PENTACYSTEINE 7 (BPC7); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: BPC2 (BASIC PENTACYSTEINE 2); DNA binding / transcription factor (TAIR:AT1G14685.3); Has 128 Blast hits to 128 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35550.4p  transcript_id AT2G35550.4  protein_id AT2G35550.4p  transcript_id AT2G35550.4  
At2g35570	chr2:014931139	0.0	C/14931139-14933175	AT2G35570.1  pseudogenic_transcript  pseudo  gene_syn T32F12.5, T32F12_5  note pseudogene, serpin (serine protease inhibitor) family, similar to phloem serpin-1 (Cucurbita maxima) GI:9937311; blastp match of 49% identity and 9.9e-85 P-value to GP|26224736|gb|AAN76362.1||AY158152 serpin-like protein {Citrus x paradisi}  
At2g35580	chr2:014935383	0.0	C/14935383-14935482,14935044-14935333,14933828-14934562	AT2G35580.1  CDS  gene_syn T32F12.4, T32F12_4  go_function serine-type endopeptidase inhibitor activity|GO:0004867||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function serine-type endopeptidase inhibitor activity|GO:0004867||ISS  product serpin family protein / serine protease inhibitor family protein  note serpin family protein / serine protease inhibitor family protein; FUNCTIONS IN: serine-type endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protease inhibitor I4, serpin, plant (InterPro:IPR015554), Protease inhibitor I4, serpin (InterPro:IPR000215); BEST Arabidopsis thaliana protein match is: serpin, putative / serine protease inhibitor, putative (TAIR:AT1G47710.1); Has 4496 Blast hits to 4477 proteins in 321 species: Archae - 52; Bacteria - 215; Metazoa - 3434; Fungi - 1; Plants - 215; Viruses - 419; Other Eukaryotes - 160 (source: NCBI BLink).  protein_id AT2G35580.1p  transcript_id AT2G35580.1  protein_id AT2G35580.1p  transcript_id AT2G35580.1  
At2g35585	chr2:014936889	0.0	W/14936889-14936954,14937356-14937532,14937646-14937873	AT2G35585.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31940.1); Has 38 Blast hits to 38 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35585.1p  transcript_id AT2G35585.1  protein_id AT2G35585.1p  transcript_id AT2G35585.1  
At2g35590	chr2:014938536	0.0	C/14938536-14939921	AT2G35590.1  pseudogenic_transcript  pseudo  gene_syn T32F12.3, T32F12_3  note pseudogene, serpin (serine protease inhibitor), putative, similar to protein zx (Hordeum vulgare subsp. vulgare) GI:19071, serpin (Triticum aestivum) GI:1885346; contains Pfam profile PF00079: Serpin (serine protease inhibitor); this is very likely a pseudogene.; blastp match of 52% identity and 2.2e-73 P-value to GP|26224736|gb|AAN76362.1||AY158152 serpin-like protein {Citrus x paradisi}  
At2g35600	chr2:014943162	0.0	C/14943162-14943281,14941869-14942248,14941629-14941758,14941254-14941540,14941092-14941170	AT2G35600.1  CDS  gene_syn ARABIDOPSIS THALIANA BREVIS RADIX LIKE 1, ATBRXL1, BREVIS RADIX LIKE 1, BRXL1, T32F12.2, T32F12_2  gene BRXL1  function Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product BRXL1 (BREVIS RADIX LIKE 1)  note BREVIS RADIX LIKE 1 (BRXL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591); BEST Arabidopsis thaliana protein match is: BRX (BREVIS RADIX); identical protein binding / water channel (TAIR:AT1G31880.1); Has 356 Blast hits to 244 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 356; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35600.1p  transcript_id AT2G35600.1  protein_id AT2G35600.1p  transcript_id AT2G35600.1  
At2g35605	chr2:014946161	0.0	W/14946161-14946364,14946902-14947027	AT2G35605.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SWIB complex BAF60b domain-containing protein  note SWIB complex BAF60b domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 (InterPro:IPR003121); BEST Arabidopsis thaliana protein match is: SWIB complex BAF60b domain-containing protein (TAIR:AT1G31760.1); Has 726 Blast hits to 687 proteins in 149 species: Archae - 0; Bacteria - 129; Metazoa - 56; Fungi - 126; Plants - 201; Viruses - 8; Other Eukaryotes - 206 (source: NCBI BLink).  protein_id AT2G35605.1p  transcript_id AT2G35605.1  protein_id AT2G35605.1p  transcript_id AT2G35605.1  
At2g35610	chr2:014950932	0.0	C/14950932-14951106,14950097-14950414,14949803-14950008,14949612-14949717,14949199-14949455,14948963-14949098,14948780-14948874,14948634-14948687,14948432-14948545,14948246-14948344,14948049-14948168,14947871-14947957,14947617-14947784	AT2G35610.1  CDS  gene_syn T20F21.19, T20F21_19  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70630.1); Has 210 Blast hits to 209 proteins in 24 species: Archae - 0; Bacteria - 6; Metazoa - 3; Fungi - 0; Plants - 175; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT2G35610.1p  transcript_id AT2G35610.1  protein_id AT2G35610.1p  transcript_id AT2G35610.1  
At2g35612	chr2:014955241	0.0	C/14955241-14955501	AT2G35612.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower, root; BEST Arabidopsis thaliana protein match is: copper amine oxidase, putative (TAIR:AT1G31670.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35612.1p  transcript_id AT2G35612.1  protein_id AT2G35612.1p  transcript_id AT2G35612.1  
At2g35613	chr2:014958045	0.0	W/14958045-14958630	AT2G35613.1  pseudogenic_transcript  pseudo  function unknown pseudogene  
At2g35615	chr2:014959391	0.0	W/14959391-14960734	AT2G35615.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT1G31450.1); Has 1900 Blast hits to 1881 proteins in 217 species: Archae - 0; Bacteria - 0; Metazoa - 308; Fungi - 350; Plants - 1110; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).  protein_id AT2G35615.1p  transcript_id AT2G35615.1  protein_id AT2G35615.1p  transcript_id AT2G35615.1  
At2g35620	chr2:014964544	0.0	C/14964544-14964640,14964297-14964432,14964135-14964206,14963975-14964046,14963651-14963722,14963191-14963262,14963025-14963096,14962741-14962829,14962464-14962619,14962036-14962368,14961711-14961956,14961483-14961616,14961187-14961405	AT2G35620.1  CDS  gene_syn FEI 2, FEI2, T20F21.18, T20F21_18  gene FEI2  function Encodes a plasma membrane localized leucine-rich repeat receptor kinase that is involved in cell wall elongation. Loss of function mutations of FEI1 and FEI2 exhibit defects in root and hypocotyl cell elongation. Double mutants are defective in cell wall biosynthesis and have thick hypocotyls, and short, thick roots.  go_component plasma membrane|GO:0005886|19017745|IDA  go_process plant-type cell wall organization|GO:0009664|19017745|IMP  go_process unidimensional cell growth|GO:0009826|19017745|IMP  go_function kinase activity|GO:0016301|19017745|IDA  go_function kinase activity|GO:0016301||ISS  product FEI2 (FEI 2); kinase  note FEI 2 (FEI2); FUNCTIONS IN: kinase activity; INVOLVED IN: plant-type cell wall organization, unidimensional cell growth; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591); BEST Arabidopsis thaliana protein match is: FEI1 (FEI 1); ATP binding / kinase/ protein serine/threonine kinase (TAIR:AT1G31420.1); Has 125026 Blast hits to 93490 proteins in 3203 species: Archae - 90; Bacteria - 9750; Metazoa - 41859; Fungi - 7042; Plants - 48227; Viruses - 439; Other Eukaryotes - 17619 (source: NCBI BLink).  protein_id AT2G35620.1p  transcript_id AT2G35620.1  protein_id AT2G35620.1p  transcript_id AT2G35620.1  
At2g35630	chr2:014966828	0.0	W/14966828-14966990,14967186-14967291,14967383-14967506,14968240-14968319,14968407-14968584,14968881-14968945,14969232-14969314,14969409-14969494,14969642-14969755,14970040-14970159,14970323-14970425,14970564-14970700,14970952-14971017,14971175-14971292,14971384-14971421,14971670-14971741,14971888-14971992,14972088-14972193,14972518-14972630,14972734-14972821,14972943-14973043,14973120-14973227,14973343-14973448,14973551-14973630,14973703-14973846,14973955-14974030,14974146-14974270,14974369-14974479,14974564-14974713,14974815-14974889,14974966-14975044,14975133-14975236,14975308-14975403,14975494-14975568,14975646-14975741,14975849-14975950,14976045-14976146,14976278-14976460,14976540-14976651,14976871-14976947,14977027-14977106,14977336-14977398,14977469-14977595,14977870-14977992,14978092-14978169,14978272-14978430,14978525-14978683,14978836-14978933,14979054-14979210,14979368-14979580,14979683-14979754,14979840-14980026,14980108-14980361	AT2G35630.1  CDS  gene_syn GEM1, MICROTUBULE ORGANIZATION 1, MOR1, T20F21.17, T20F21_17  gene MOR1  function Member of the MAP215 family of microtubule-associated proteins required to establish interphase arrays of cortical microtubules.Mutants have defects in cytokinesis during pollen development. Vegetative phenotypes observed in temperature sensitive mutants include left-handed organ twisting, isotropic cell expansion and impairment of root hair polarity.  go_component spindle|GO:0005819|12198497|IDA  go_component microtubule|GO:0005874|12198497|IDA  go_component phragmoplast|GO:0009524|12198497|IDA  go_component preprophase band|GO:0009574|12198497|IDA  go_component cortical microtubule cytoskeleton|GO:0030981|12198497|IDA  go_process microtubule cytoskeleton organization|GO:0000226|11385579|IMP  go_process cytokinesis|GO:0000910|12198497|IMP  go_process cell plate formation involved in plant-type cell wall biogenesis|GO:0009920|15753108|IMP  go_function microtubule binding|GO:0008017|12198497|IDA  product MOR1 (MICROTUBULE ORGANIZATION 1); microtubule binding  note MICROTUBULE ORGANIZATION 1 (MOR1); FUNCTIONS IN: microtubule binding; INVOLVED IN: microtubule cytoskeleton organization, cell plate formation involved in plant-type cell wall biogenesis, cytokinesis; LOCATED IN: cortical microtubule cytoskeleton, microtubule, preprophase band, spindle, phragmoplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28155.1); Has 828 Blast hits to 542 proteins in 141 species: Archae - 0; Bacteria - 2; Metazoa - 429; Fungi - 206; Plants - 54; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).  protein_id AT2G35630.1p  transcript_id AT2G35630.1  protein_id AT2G35630.1p  transcript_id AT2G35630.1  
At2g35635	chr2:014981044	0.0	W/14981044-14981136,14981392-14981651,14981832-14981943	AT2G35635.1  CDS  gene_syn RELATED TO UBIQUITIN 2, RUB2, UBQ7  gene UBQ7  function encodes a ubiquitin-like protein that contains tandem repeats of the ubiquitin coding region, but at least one repeat per gene encodes a protein with amino acid substitutions.  go_component intracellular|GO:0005622||TAS  go_process protein modification process|GO:0006464||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|7713442|ISS  go_function protein binding|GO:0005515|8382544|ISS  product UBQ7; protein binding  note UBQ7; FUNCTIONS IN: protein binding; INVOLVED IN: protein modification process, ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: RUB1 (RELATED TO UBIQUITIN 1); protein binding (TAIR:AT1G31340.1); Has 12125 Blast hits to 5549 proteins in 611 species: Archae - 0; Bacteria - 13; Metazoa - 5816; Fungi - 1244; Plants - 2285; Viruses - 312; Other Eukaryotes - 2455 (source: NCBI BLink).  protein_id AT2G35635.1p  transcript_id AT2G35635.1  protein_id AT2G35635.1p  transcript_id AT2G35635.1  
At2g35637	chr2:014982608	0.0	C/14982608-14983998	AT2G35637.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G35640  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G35637.1  
At2g35640	chr2:014982835	0.0	W/14982835-14983519,14983845-14984182	AT2G35640.1  CDS  gene_syn T20F21.22, T20F21_22  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G31310.1); Has 369 Blast hits to 363 proteins in 75 species: Archae - 0; Bacteria - 24; Metazoa - 95; Fungi - 42; Plants - 181; Viruses - 2; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT2G35640.1p  transcript_id AT2G35640.1  protein_id AT2G35640.1p  transcript_id AT2G35640.1  
At2g35650	chr2:014985625	0.0	W/14985625-14985690,14986064-14986393,14986476-14986574,14986704-14986956,14987048-14987158,14987229-14987365,14987440-14987939,14988013-14988187	AT2G35650.1  CDS  gene_syn ATCSLA07, ATCSLA7, CELLULOSE SYNTHASE LIKE, CELLULOSE SYNTHASE LIKE A7, CSLA07, CSLA7, T20F21.16, T20F21_16  gene ATCSLA07  function a member of Glycosyltransferase- Family 2 and encodes a beta-mannan synthase based on in vitro enzyme assays from heterologously expressed protein. Mutants exhibit defects in pollen tube growth and embryo development. The defective embryonic development was associated with reduced proliferation and failed cellularization of the endosperm.  go_process embryonic development ending in seed dormancy|GO:0009793|12586879|IMP  go_process pollen tube growth|GO:0009860|12586879|IMP  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function mannan synthase activity|GO:0051753|15647349|IDA  product ATCSLA07 (CELLULOSE SYNTHASE LIKE); mannan synthase/ transferase, transferring glycosyl groups  note CELLULOSE SYNTHASE LIKE (ATCSLA07); FUNCTIONS IN: transferase activity, transferring glycosyl groups, mannan synthase activity; INVOLVED IN: embryonic development ending in seed dormancy, pollen tube growth; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: ATCSLA09; mannan synthase/ transferase, transferring glycosyl groups (TAIR:AT5G03760.1); Has 3247 Blast hits to 3243 proteins in 857 species: Archae - 117; Bacteria - 2376; Metazoa - 40; Fungi - 65; Plants - 310; Viruses - 11; Other Eukaryotes - 328 (source: NCBI BLink).  protein_id AT2G35650.1p  transcript_id AT2G35650.1  protein_id AT2G35650.1p  transcript_id AT2G35650.1  
At2g35660	chr2:014988499	0.0	W/14988499-14988692,14988778-14988924,14989010-14989075,14989158-14989320,14989489-14989717,14989800-14990320	AT2G35660.1  CDS  gene_syn CTF2A, T20F21.15, T20F21_15  gene CTF2A  function Encodes a member of a novel gene family with homology to known proteins involved in hydroxylation and oxidation of an aromatic ring.  go_process metabolic process|GO:0008152||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function monooxygenase activity|GO:0004497||ISS  product CTF2A; monooxygenase/ oxidoreductase  note CTF2A; FUNCTIONS IN: oxidoreductase activity, monooxygenase activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: Aromatic-ring hydroxylase-like (InterPro:IPR003042), Monooxygenase, FAD-binding (InterPro:IPR002938); BEST Arabidopsis thaliana protein match is: CTF2B; monooxygenase/ oxidoreductase (TAIR:AT2G29720.1); Has 5750 Blast hits to 5728 proteins in 867 species: Archae - 14; Bacteria - 3113; Metazoa - 80; Fungi - 1131; Plants - 302; Viruses - 0; Other Eukaryotes - 1110 (source: NCBI BLink).  protein_id AT2G35660.1p  transcript_id AT2G35660.1  protein_id AT2G35660.1p  transcript_id AT2G35660.1  
At2g35660	chr2:014989011	0.0	W/14989011-14989075,14989158-14989320,14989489-14989717,14989800-14990320	AT2G35660.2  CDS  gene_syn CTF2A, T20F21.15, T20F21_15  gene CTF2A  function Encodes a member of a novel gene family with homology to known proteins involved in hydroxylation and oxidation of an aromatic ring.  go_process metabolic process|GO:0008152||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function monooxygenase activity|GO:0004497||ISS  product CTF2A; monooxygenase/ oxidoreductase  note CTF2A; FUNCTIONS IN: oxidoreductase activity, monooxygenase activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: Aromatic-ring hydroxylase-like (InterPro:IPR003042), Monooxygenase, FAD-binding (InterPro:IPR002938); BEST Arabidopsis thaliana protein match is: CTF2B; monooxygenase/ oxidoreductase (TAIR:AT2G29720.1); Has 3334 Blast hits to 3329 proteins in 578 species: Archae - 3; Bacteria - 1588; Metazoa - 8; Fungi - 802; Plants - 290; Viruses - 0; Other Eukaryotes - 643 (source: NCBI BLink).  protein_id AT2G35660.2p  transcript_id AT2G35660.2  protein_id AT2G35660.2p  transcript_id AT2G35660.2  
At2g35660	chr2:014989011	0.0	W/14989011-14989075,14989158-14989320,14989489-14989717,14989800-14990320	AT2G35660.3  CDS  gene_syn CTF2A, T20F21.15, T20F21_15  gene CTF2A  function Encodes a member of a novel gene family with homology to known proteins involved in hydroxylation and oxidation of an aromatic ring.  go_process metabolic process|GO:0008152||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function monooxygenase activity|GO:0004497||ISS  product CTF2A; monooxygenase/ oxidoreductase  note CTF2A; FUNCTIONS IN: oxidoreductase activity, monooxygenase activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: Aromatic-ring hydroxylase-like (InterPro:IPR003042), Monooxygenase, FAD-binding (InterPro:IPR002938); BEST Arabidopsis thaliana protein match is: CTF2B; monooxygenase/ oxidoreductase (TAIR:AT2G29720.1); Has 3334 Blast hits to 3329 proteins in 578 species: Archae - 3; Bacteria - 1588; Metazoa - 8; Fungi - 802; Plants - 290; Viruses - 0; Other Eukaryotes - 643 (source: NCBI BLink).  protein_id AT2G35660.3p  transcript_id AT2G35660.3  protein_id AT2G35660.3p  transcript_id AT2G35660.3  
At2g35658	chr2:014990592	0.0	C/14990592-14990906	AT2G35658.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16840.1); Has 23 Blast hits to 23 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35658.2p  transcript_id AT2G35658.2  protein_id AT2G35658.2p  transcript_id AT2G35658.2  
At2g35658	chr2:014990651	0.0	C/14990651-14990906,14990520-14990536	AT2G35658.3  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16840.1); Has 23 Blast hits to 23 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35658.3p  transcript_id AT2G35658.3  protein_id AT2G35658.3p  transcript_id AT2G35658.3  
At2g35658	chr2:014990651	0.0	C/14990651-14990906,14990520-14990539	AT2G35658.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16840.1); Has 23 Blast hits to 23 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35658.1p  transcript_id AT2G35658.1  protein_id AT2G35658.1p  transcript_id AT2G35658.1  
At2g35670	chr2:014992721	0.0	W/14992721-14992981,14993268-14993323,14993619-14993689,14993791-14993843,14993971-14994024,14994110-14994175,14994262-14994311,14994393-14995577,14995647-14995695,14995782-14995865,14995972-14996051,14996175-14996264,14996390-14996558	AT2G35670.1  CDS  gene_syn FERTILIZATION INDEPENDENT SEED 2, FERTILIZATION-INDEPENDENT ENDOSPERM 2, FERTILIZATION-INDEPENDENT SEED 2 PROTEIN, FIE2, FIS2, T20F21.14, T20F21_14  gene FIS2  function Encodes a negative regulator of seed development in the absence of pollination. In the ovule, the FIS2 transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilization.  go_component nucleus|GO:0005634|10962025|IDA  go_process DNA methylation|GO:0006306|16648367|IEP  go_process genetic imprinting|GO:0006349|16648367|IEP  go_process endosperm development|GO:0009960|10962025|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9874812|ISS  product FIS2 (FERTILIZATION INDEPENDENT SEED 2); transcription factor  note FERTILIZATION INDEPENDENT SEED 2 (FIS2); FUNCTIONS IN: transcription factor activity; INVOLVED IN: genetic imprinting, DNA methylation, endosperm development; LOCATED IN: nucleus; EXPRESSED IN: ovule, free nuclear endosperm, endosperm, female gametophyte; EXPRESSED DURING: megagametophyte developmental stages; BEST Arabidopsis thaliana protein match is: VRN2 (REDUCED VERNALIZATION RESPONSE 2); transcription factor (TAIR:AT4G16845.2); Has 10772 Blast hits to 6413 proteins in 463 species: Archae - 2; Bacteria - 829; Metazoa - 4008; Fungi - 1580; Plants - 344; Viruses - 120; Other Eukaryotes - 3889 (source: NCBI BLink).  protein_id AT2G35670.1p  transcript_id AT2G35670.1  protein_id AT2G35670.1p  transcript_id AT2G35670.1  
At2g35680	chr2:014998354	0.0	C/14998354-14998590,14998034-14998156,14997855-14997948,14997653-14997735,14997479-14997568,14997004-14997390	AT2G35680.1  CDS  gene_syn T20F21.13, T20F21_13  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_process dephosphorylation|GO:0016311||IEA  go_function protein tyrosine phosphatase activity|GO:0004725||IEA  go_function protein tyrosine/serine/threonine phosphatase activity|GO:0008138||IEA  go_function phosphatase activity|GO:0016791||IEA  go_component cellular_component|GO:0005575||ND  go_function protein tyrosine/serine/threonine phosphatase activity|GO:0008138||ISS  product dual specificity protein phosphatase family protein  note dual specificity protein phosphatase family protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation, dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Protein-tyrosine phosphatase (InterPro:IPR000387), Protein-tyrosine phosphatase, dual specificity (InterPro:IPR000340); BEST Arabidopsis thaliana protein match is: dual specificity protein phosphatase family protein (TAIR:AT5G56610.1); Has 1622 Blast hits to 1620 proteins in 220 species: Archae - 34; Bacteria - 127; Metazoa - 962; Fungi - 94; Plants - 121; Viruses - 22; Other Eukaryotes - 262 (source: NCBI BLink).  protein_id AT2G35680.1p  transcript_id AT2G35680.1  protein_id AT2G35680.1p  transcript_id AT2G35680.1  
At2g35690	chr2:014999962	0.0	W/14999962-15000099,15000179-15000349,15000427-15000636,15000723-15000810,15000892-15001054,15001152-15001350,15001500-15001697,15001778-15001909,15002035-15002155,15002239-15002419,15002499-15002892	AT2G35690.1  CDS  gene_syn ACX5, ACYL-COA OXIDASE 5, T20F21.12, T20F21_12  gene ACX5  function Encodes a putative acyl-CoA oxidase. Expressed uniformly in seedlings and throughout development.  go_component peroxisome|GO:0005777||IEA  go_process fatty acid metabolic process|GO:0006631||IEA  go_process fatty acid beta-oxidation|GO:0006635||IEA  go_process metabolic process|GO:0008152||IEA  go_function acyl-CoA dehydrogenase activity|GO:0003995||IEA  go_function acyl-CoA oxidase activity|GO:0003997||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on the CH-CH group of donors|GO:0016627||IEA  go_function FAD binding|GO:0050660||IEA  go_component peroxisome|GO:0005777||ISS  go_process fatty acid beta-oxidation|GO:0006635||ISS  go_function acyl-CoA oxidase activity|GO:0003997||ISS  product ACX5 (ACYL-COA OXIDASE 5); FAD binding / acyl-CoA dehydrogenase/ acyl-CoA oxidase/ electron carrier/ oxidoreductase/ oxidoreductase, acting on the CH-CH group of donors  note ACYL-COA OXIDASE 5 (ACX5); FUNCTIONS IN: in 6 functions; INVOLVED IN: fatty acid beta-oxidation, fatty acid metabolic process, metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal (InterPro:IPR013764), Acyl-CoA dehydrogenase/oxidase, middle and N-terminal (InterPro:IPR009100), Acyl-CoA oxidase (InterPro:IPR012258), Acyl-CoA dehydrogenase/oxidase, N-terminal (InterPro:IPR013786), Acyl-CoA dehydrogenase/oxidase, central region (InterPro:IPR006091), Acyl-CoA oxidase, C-terminal (InterPro:IPR002655), Acyl-CoA dehydrogenase/oxidase C-terminal (InterPro:IPR009075); BEST Arabidopsis thaliana protein match is: ACX1 (ACYL-COA OXIDASE 1); acyl-CoA oxidase (TAIR:AT4G16760.1); Has 5608 Blast hits to 5593 proteins in 724 species: Archae - 54; Bacteria - 3018; Metazoa - 1171; Fungi - 278; Plants - 154; Viruses - 0; Other Eukaryotes - 933 (source: NCBI BLink).  protein_id AT2G35690.1p  transcript_id AT2G35690.1  protein_id AT2G35690.1p  transcript_id AT2G35690.1  
At2g35700	chr2:015005205	0.0	W/15005205-15005789	AT2G35700.1  CDS  gene_syn ATERF38, ERF FAMILY PROTEIN 38, ERF38, T20F21.11, T20F21_11  gene ERF38  function encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Thought to be involved in secondary cell wall metabolism.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process embryonic development ending in seed dormancy|GO:0009793|18723362|IGI  go_process secondary cell wall biogenesis|GO:0009834|18723362|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product ERF38 (ERF FAMILY PROTEIN 38); DNA binding / transcription factor  note ERF FAMILY PROTEIN 38 (ERF38); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: embryonic development ending in seed dormancy, secondary cell wall biogenesis, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seed maturation stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: DRE-binding transcription factor, putative (TAIR:AT4G16750.1); Has 3812 Blast hits to 3708 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3807; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT2G35700.1p  transcript_id AT2G35700.1  protein_id AT2G35700.1p  transcript_id AT2G35700.1  
At2g35710	chr2:015011771	0.0	C/15011771-15012251,15011543-15011690,15010925-15011465	AT2G35710.2  CDS  gene_syn T20F21.27  go_process biosynthetic process|GO:0009058||ISS  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product glycogenin glucosyltransferase (glycogenin)-related  note glycogenin glucosyltransferase (glycogenin)-related; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process, biosynthetic process; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT4G16600.1); Has 537 Blast hits to 535 proteins in 119 species: Archae - 0; Bacteria - 38; Metazoa - 209; Fungi - 60; Plants - 194; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT2G35710.2p  transcript_id AT2G35710.2  protein_id AT2G35710.2p  transcript_id AT2G35710.2  
At2g35710	chr2:015013723	0.0	C/15013723-15014070	AT2G35710.3  CDS  gene_syn T20F21.27  go_component endomembrane system|GO:0012505||IEA  go_process biosynthetic process|GO:0009058||ISS  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product glycogenin glucosyltransferase (glycogenin)-related  note glycogenin glucosyltransferase (glycogenin)-related; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process, biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT4G16600.1); Has 30 Blast hits to 30 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35710.3p  transcript_id AT2G35710.3  protein_id AT2G35710.3p  transcript_id AT2G35710.3  
At2g35710	chr2:015013727	0.0	C/15013727-15014070,15011771-15012231,15011543-15011690,15010925-15011465	AT2G35710.1  CDS  gene_syn T20F21.27  go_component endomembrane system|GO:0012505||IEA  go_process biosynthetic process|GO:0009058||ISS  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product glycogenin glucosyltransferase (glycogenin)-related  note glycogenin glucosyltransferase (glycogenin)-related; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process, biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT4G16600.1); Has 648 Blast hits to 646 proteins in 142 species: Archae - 0; Bacteria - 40; Metazoa - 211; Fungi - 109; Plants - 241; Viruses - 4; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT2G35710.1p  transcript_id AT2G35710.1  protein_id AT2G35710.1p  transcript_id AT2G35710.1  
At2g35720	chr2:015016883	0.0	W/15016883-15017035,15017159-15017445,15017739-15017936,15018023-15018137,15018224-15018310,15018397-15018485,15018624-15018708,15018793-15018846,15019135-15019215,15019306-15019383,15019477-15019866	AT2G35720.1  CDS  gene_syn T20F21.9, T20F21_9  go_function heat shock protein binding|GO:0031072||IEA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock protein, putative (TAIR:AT3G47940.1); Has 15787 Blast hits to 15749 proteins in 1885 species: Archae - 105; Bacteria - 5397; Metazoa - 3297; Fungi - 1386; Plants - 1147; Viruses - 13; Other Eukaryotes - 4442 (source: NCBI BLink).  protein_id AT2G35720.1p  transcript_id AT2G35720.1  protein_id AT2G35720.1p  transcript_id AT2G35720.1  
At2g35730	chr2:015021413	0.0	C/15021413-15021475,15021050-15021131,15020559-15020761	AT2G35730.1  CDS  gene_syn T20F21.3  go_component endomembrane system|GO:0012505||IEA  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: endomembrane system; EXPRESSED IN: stem, leaf whorl, sepal, root, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121), Heavy-metal-associated, conserved site (InterPro:IPR017969); Has 18 Blast hits to 18 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35730.1p  transcript_id AT2G35730.1  protein_id AT2G35730.1p  transcript_id AT2G35730.1  
At2g35733	chr2:015022676	0.0	C/15022676-15022867	AT2G35733.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35733.1p  transcript_id AT2G35733.1  protein_id AT2G35733.1p  transcript_id AT2G35733.1  
At2g35736	chr2:015023084	0.0	C/15023084-15023254	AT2G35736.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25225.1); Has 45 Blast hits to 45 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35736.1p  transcript_id AT2G35736.1  protein_id AT2G35736.1p  transcript_id AT2G35736.1  
At2g35738	chr2:015023559	0.0	W/15023559-15024286	AT2G35738.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G35740  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G35738.2  
At2g35738	chr2:015023559	0.0	W/15023559-15025465	AT2G35738.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G35740  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G35738.1  
At2g35738	chr2:015023581	0.0	W/15023581-15025334	AT2G35738.3  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G35740  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G35738.3  
At2g35740	chr2:015025875	0.0	C/15025875-15026414,15025060-15025785,15024489-15024965	AT2G35740.1  CDS  gene_syn ATINT3, INT3, NOSITOL TRANSPORTER 3, T20F21.7, T20F21_7  gene INT3  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product INT3 (NOSITOL TRANSPORTER 3); carbohydrate transmembrane transporter/ sugar:hydrogen symporter  note NOSITOL TRANSPORTER 3 (INT3); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: INT4 (INOSITOL TRANSPORTER 4); carbohydrate transmembrane transporter/ myo-inositol:hydrogen symporter/ sugar:hydrogen symporter (TAIR:AT4G16480.1); Has 29976 Blast hits to 23476 proteins in 1368 species: Archae - 314; Bacteria - 12354; Metazoa - 5835; Fungi - 7449; Plants - 2427; Viruses - 0; Other Eukaryotes - 1597 (source: NCBI BLink).  protein_id AT2G35740.1p  transcript_id AT2G35740.1  protein_id AT2G35740.1p  transcript_id AT2G35740.1  
At2g35742	chr2:015027589	0.0	C/15027589-15027668	AT2G35742.1  snoRNA  gene_syn 48848.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT2G35742.1  
At2g35743	chr2:015027810	0.0	C/15027810-15027989	AT2G35743.1  pseudogenic_transcript  pseudo  function Pseudogene of AT2G35750; unknown protein  
At2g35744	chr2:015029712	0.0	C/15029712-15029790	AT2G35744.1  snoRNA  gene_syn 48848.SNORNA00002  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT2G35744.1  
At2g35747	chr2:015029832	0.0	C/15029832-15029911	AT2G35747.1  snoRNA  gene_syn 48848.SNORNA00003  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT2G35747.1  
At2g35750	chr2:015029904	0.0	C/15029904-15030089	AT2G35750.1  CDS  gene_syn T20F21.6, T20F21_6  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35750.1p  transcript_id AT2G35750.1  protein_id AT2G35750.1p  transcript_id AT2G35750.1  
At2g35760	chr2:015032059	0.0	W/15032059-15032279,15032364-15032496,15032843-15033094	AT2G35760.1  CDS  gene_syn T20F21.5, T20F21_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane family protein  note integral membrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT4G16442.1); Has 305 Blast hits to 305 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 305; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35760.1p  transcript_id AT2G35760.1  protein_id AT2G35760.1p  transcript_id AT2G35760.1  
At2g35765	chr2:015033634	0.0	W/15033634-15033839,15033940-15033955	AT2G35765.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19500.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35765.1p  transcript_id AT2G35765.1  protein_id AT2G35765.1p  transcript_id AT2G35765.1  
At2g35770	chr2:015036122	0.0	C/15036122-15036497,15035938-15036033,15035759-15035851,15035142-15035227,15034592-15035064,15034179-15034443	AT2G35770.1  CDS  gene_syn T20F21.4, T20F21_4, scpl28, serine carboxypeptidase-like 28  gene scpl28  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl28 (serine carboxypeptidase-like 28); serine-type carboxypeptidase  note serine carboxypeptidase-like 28 (scpl28); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: SCPL27 (serine carboxypeptidase-like 27); serine-type carboxypeptidase (TAIR:AT3G07990.1); Has 2552 Blast hits to 2505 proteins in 311 species: Archae - 0; Bacteria - 217; Metazoa - 574; Fungi - 562; Plants - 890; Viruses - 0; Other Eukaryotes - 309 (source: NCBI BLink).  protein_id AT2G35770.1p  transcript_id AT2G35770.1  protein_id AT2G35770.1p  transcript_id AT2G35770.1  
At2g35780	chr2:015039747	0.0	C/15039747-15040104,15039570-15039665,15039402-15039494,15039256-15039329,15038913-15039179,15038333-15038460,15038152-15038247,15037959-15038064,15037733-15037873	AT2G35780.1  CDS  gene_syn T20F21.2, scpl26, serine carboxypeptidase-like 26  gene scpl26  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl26 (serine carboxypeptidase-like 26); serine-type carboxypeptidase  note serine carboxypeptidase-like 26 (scpl26); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: SCPL27 (serine carboxypeptidase-like 27); serine-type carboxypeptidase (TAIR:AT3G07990.1); Has 2609 Blast hits to 2552 proteins in 299 species: Archae - 0; Bacteria - 182; Metazoa - 580; Fungi - 562; Plants - 967; Viruses - 0; Other Eukaryotes - 318 (source: NCBI BLink).  protein_id AT2G35780.1p  transcript_id AT2G35780.1  protein_id AT2G35780.1p  transcript_id AT2G35780.1  
At2g35790	chr2:015040735	0.0	W/15040735-15040807,15041333-15041976	AT2G35790.1  CDS  gene_syn T20F21.20  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 75 Blast hits to 75 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 43; Fungi - 4; Plants - 26; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G35790.1p  transcript_id AT2G35790.1  protein_id AT2G35790.1p  transcript_id AT2G35790.1  
At2g35795	chr2:015042321	0.0	W/15042321-15042323,15042847-15043025,15043178-15043334	AT2G35795.1  CDS  gene_syn T20F21.1, T20F21_1  go_function heat shock protein binding|GO:0031072||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT3G09700.1); Has 691 Blast hits to 691 proteins in 212 species: Archae - 0; Bacteria - 129; Metazoa - 169; Fungi - 134; Plants - 46; Viruses - 2; Other Eukaryotes - 211 (source: NCBI BLink).  protein_id AT2G35795.1p  transcript_id AT2G35795.1  protein_id AT2G35795.1p  transcript_id AT2G35795.1  
At2g35800	chr2:015044437	0.0	W/15044437-15045571,15045960-15046377,15046602-15046746,15046954-15047069,15047159-15047237,15047691-15047924,15048008-15048352	AT2G35800.1  CDS  gene_syn F11F19.29, F11F19_29  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_process transport|GO:0006810||IEA  go_function binding|GO:0005488||IEA  go_function calcium ion binding|GO:0005509||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_function calcium ion binding|GO:0005509||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: binding, calcium ion binding; INVOLVED IN: transport; LOCATED IN: mitochondrial inner membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), Mitochondrial substrate carrier (InterPro:IPR001993), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Mitochondrial carrier protein (InterPro:IPR002067), EF-HAND 2 (InterPro:IPR018249), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT2G26360.1); Has 12639 Blast hits to 9119 proteins in 328 species: Archae - 0; Bacteria - 0; Metazoa - 6307; Fungi - 3387; Plants - 1848; Viruses - 0; Other Eukaryotes - 1097 (source: NCBI BLink).  protein_id AT2G35800.1p  transcript_id AT2G35800.1  protein_id AT2G35800.1p  transcript_id AT2G35800.1  
At2g35810	chr2:015049152	0.0	W/15049152-15049345,15049571-15049910,15050002-15050067	AT2G35810.1  CDS  gene_syn F11F19.28, F11F19_28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35830.1); Has 91 Blast hits to 91 proteins in 38 species: Archae - 0; Bacteria - 52; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G35810.1p  transcript_id AT2G35810.1  protein_id AT2G35810.1p  transcript_id AT2G35810.1  
At2g35820	chr2:015050933	0.0	W/15050933-15051084,15051482-15051818,15051915-15052004	AT2G35820.1  CDS  gene_syn F11F19.27, F11F19_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35810.1); Has 91 Blast hits to 91 proteins in 38 species: Archae - 0; Bacteria - 52; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G35820.1p  transcript_id AT2G35820.1  protein_id AT2G35820.1p  transcript_id AT2G35820.1  
At2g35830	chr2:015052302	0.0	W/15052302-15052453,15052682-15053009,15053086-15053160	AT2G35830.1  CDS  gene_syn F11F19.26, F11F19_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35810.1); Has 93 Blast hits to 93 proteins in 40 species: Archae - 0; Bacteria - 56; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT2G35830.1p  transcript_id AT2G35830.1  protein_id AT2G35830.1p  transcript_id AT2G35830.1  
At2g35840	chr2:015053952	0.0	W/15053952-15054011,15054084-15054383,15054466-15054567,15054659-15054853,15054940-15055230,15055309-15055495,15055576-15055622,15055690-15055776	AT2G35840.1  CDS  gene_syn F11F19.25, F11F19_25  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function magnesium ion binding|GO:0000287||IEA  go_function catalytic activity|GO:0003824||IEA  go_function phosphatase activity|GO:0016791||IEA  go_function sucrose-phosphatase activity|GO:0050307||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process sucrose biosynthetic process|GO:0005986||ISS  go_function sucrose-phosphatase activity|GO:0050307||ISS  product sucrose-phosphatase 1 (SPP1)  note sucrose-phosphatase 1 (SPP1); FUNCTIONS IN: phosphatase activity, magnesium ion binding, sucrose-phosphatase activity, catalytic activity; INVOLVED IN: response to cadmium ion, sucrose biosynthetic process; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sucrose-6F-phosphate phosphohydrolase, plant and cyanobacteria (InterPro:IPR006380), Sucrose-6-phosphate phosphohydrolase C-terminal (InterPro:IPR013679), HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Sucrose phosphatase, plant and cyanobacteria (InterPro:IPR012847), Sucrose-phosphate phosphatase (InterPro:IPR006378); BEST Arabidopsis thaliana protein match is: SPP1 (SUCROSE-PHOSPHATASE 1); catalytic/ magnesium ion binding / phosphatase/ sucrose-phosphatase (TAIR:AT1G51420.1); Has 758 Blast hits to 754 proteins in 266 species: Archae - 0; Bacteria - 574; Metazoa - 0; Fungi - 0; Plants - 112; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT2G35840.1p  transcript_id AT2G35840.1  protein_id AT2G35840.1p  transcript_id AT2G35840.1  
At2g35840	chr2:015053952	0.0	W/15053952-15054011,15054084-15054383,15054466-15054567,15054659-15054853,15054940-15055230,15055309-15055495,15055576-15055622,15055690-15055776	AT2G35840.2  CDS  gene_syn F11F19.25, F11F19_25  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function magnesium ion binding|GO:0000287||IEA  go_function catalytic activity|GO:0003824||IEA  go_function phosphatase activity|GO:0016791||IEA  go_function sucrose-phosphatase activity|GO:0050307||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process sucrose biosynthetic process|GO:0005986||ISS  go_function sucrose-phosphatase activity|GO:0050307||ISS  product sucrose-phosphatase 1 (SPP1)  note sucrose-phosphatase 1 (SPP1); FUNCTIONS IN: phosphatase activity, magnesium ion binding, catalytic activity, sucrose-phosphatase activity; INVOLVED IN: response to cadmium ion, sucrose biosynthetic process; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sucrose-6F-phosphate phosphohydrolase, plant and cyanobacteria (InterPro:IPR006380), Sucrose-6-phosphate phosphohydrolase C-terminal (InterPro:IPR013679), HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Sucrose phosphatase, plant and cyanobacteria (InterPro:IPR012847), Sucrose-phosphate phosphatase (InterPro:IPR006378); BEST Arabidopsis thaliana protein match is: SPP1 (SUCROSE-PHOSPHATASE 1); catalytic/ magnesium ion binding / phosphatase/ sucrose-phosphatase (TAIR:AT1G51420.1); Has 758 Blast hits to 754 proteins in 266 species: Archae - 0; Bacteria - 574; Metazoa - 0; Fungi - 0; Plants - 112; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT2G35840.2p  transcript_id AT2G35840.2  protein_id AT2G35840.2p  transcript_id AT2G35840.2  
At2g35850	chr2:015056753	0.0	W/15056753-15056995	AT2G35850.1  CDS  gene_syn F11F19.24, F11F19_24  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52360.1); Has 11 Blast hits to 11 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35850.1p  transcript_id AT2G35850.1  protein_id AT2G35850.1p  transcript_id AT2G35850.1  
At2g35860	chr2:015059859	0.0	W/15059859-15061137,15061752-15061810	AT2G35860.1  CDS  gene_syn F11F19.23, F11F19_23, FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 PRECURSOR, FLA16  gene FLA16  go_component endomembrane system|GO:0012505||IEA  go_process cell adhesion|GO:0007155||ISS  product FLA16 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 PRECURSOR)  note FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 PRECURSOR (FLA16); INVOLVED IN: cell adhesion; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FLA15 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 15 PRECURSOR) (TAIR:AT3G52370.1); Has 780 Blast hits to 747 proteins in 193 species: Archae - 12; Bacteria - 332; Metazoa - 140; Fungi - 32; Plants - 132; Viruses - 1; Other Eukaryotes - 131 (source: NCBI BLink).  protein_id AT2G35860.1p  transcript_id AT2G35860.1  protein_id AT2G35860.1p  transcript_id AT2G35860.1  
At2g35880	chr2:015065089	0.0	C/15065089-15065259,15064701-15065006,15064579-15064625,15064378-15064458,15064179-15064259,15064010-15064100,15063828-15063899,15063626-15063733,15063204-15063545	AT2G35880.1  CDS  gene_syn F11F19.21, F11F19_21  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Targeting for Xklp2 (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32330.3); Has 14997 Blast hits to 8919 proteins in 586 species: Archae - 10; Bacteria - 1037; Metazoa - 6567; Fungi - 1700; Plants - 594; Viruses - 59; Other Eukaryotes - 5030 (source: NCBI BLink).  protein_id AT2G35880.1p  transcript_id AT2G35880.1  protein_id AT2G35880.1p  transcript_id AT2G35880.1  
At2g35890	chr2:015068278	0.0	C/15068278-15069136,15068050-15068193,15067822-15067974,15067638-15067753,15067384-15067554,15067175-15067294	AT2G35890.1  CDS  gene_syn CPK25, F11F19.20, F11F19_20  gene CPK25  function member of Calcium Dependent Protein Kinase  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  go_function kinase activity|GO:0016301||ISS  product CPK25; ATP binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase  note CPK25; FUNCTIONS IN: protein serine/threonine kinase activity, calmodulin-dependent protein kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CPK2 (CALMODULIN-DOMAIN PROTEIN KINASE CDPK ISOFORM 2); calmodulin-dependent protein kinase/ kinase/ protein serine/threonine kinase (TAIR:AT3G10660.1); Has 81336 Blast hits to 79977 proteins in 1893 species: Archae - 70; Bacteria - 7901; Metazoa - 33974; Fungi - 8403; Plants - 13276; Viruses - 441; Other Eukaryotes - 17271 (source: NCBI BLink).  protein_id AT2G35890.1p  transcript_id AT2G35890.1  protein_id AT2G35890.1p  transcript_id AT2G35890.1  
At2g35900	chr2:015071332	0.0	C/15071332-15071540,15070203-15070572	AT2G35900.1  CDS  gene_syn F11F19.19, F11F19_19  go_component nucleus|GO:0005634|14617066|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 16 Blast hits to 16 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35900.1p  transcript_id AT2G35900.1  protein_id AT2G35900.1p  transcript_id AT2G35900.1  
At2g35910	chr2:015073225	0.0	C/15073225-15073878	AT2G35910.1  CDS  gene_syn F11F19.18, F11F19_18  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G06490.1); Has 5471 Blast hits to 5454 proteins in 225 species: Archae - 0; Bacteria - 0; Metazoa - 1753; Fungi - 324; Plants - 2565; Viruses - 57; Other Eukaryotes - 772 (source: NCBI BLink).  protein_id AT2G35910.1p  transcript_id AT2G35910.1  protein_id AT2G35910.1p  transcript_id AT2G35910.1  
At2g35920	chr2:015075674	0.0	W/15075674-15075847,15075958-15076103,15076195-15076294,15076372-15076590,15076677-15076772,15076919-15077194,15077300-15077503,15077580-15077738,15078198-15078290,15078395-15078609,15078699-15078858,15078998-15079271,15079350-15079542,15079647-15079830,15079931-15080299,15080381-15080506	AT2G35920.1  CDS  gene_syn F11F19.17, F11F19_17  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function helicase activity|GO:0004386||ISS  go_function ATP binding|GO:0005524||ISS  product helicase domain-containing protein  note helicase domain-containing protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated region (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Region of unknown function DUF1605 (InterPro:IPR011709), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP binding / ATP-dependent helicase/ double-stranded RNA binding / helicase/ nucleic acid binding (TAIR:AT5G04895.1); Has 11223 Blast hits to 7845 proteins in 1075 species: Archae - 0; Bacteria - 2913; Metazoa - 3562; Fungi - 1288; Plants - 825; Viruses - 684; Other Eukaryotes - 1951 (source: NCBI BLink).  protein_id AT2G35920.1p  transcript_id AT2G35920.1  protein_id AT2G35920.1p  transcript_id AT2G35920.1  
At2g35930	chr2:015083101	0.0	C/15083101-15084336	AT2G35930.1  CDS  gene_syn F11F19.16, F11F19_16, PLANT U-BOX 23, PUB23  gene PUB23  function Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity.  go_component cytosol|GO:0005829|18664614|IDA  go_process respiratory burst during defense response|GO:0002679|18771922|IGI  go_process defense response|GO:0006952|18771922|IGI  go_process response to water deprivation|GO:0009414|18664614|IMP  go_process response to chitin|GO:0010200|17722694|IEP  go_process protein ubiquitination|GO:0016567|18664614|IDA  go_process protein autoubiquitination|GO:0051865|18771922|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|18664614|IGI  product PUB23 (PLANT U-BOX 23); ubiquitin-protein ligase  note PLANT U-BOX 23 (PUB23); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: in 6 processes; LOCATED IN: cytosol; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: PUB22 (PLANT U-BOX 22); ubiquitin-protein ligase (TAIR:AT3G52450.1); Has 1521 Blast hits to 1504 proteins in 135 species: Archae - 0; Bacteria - 24; Metazoa - 218; Fungi - 59; Plants - 1041; Viruses - 3; Other Eukaryotes - 176 (source: NCBI BLink).  protein_id AT2G35930.1p  transcript_id AT2G35930.1  protein_id AT2G35930.1p  transcript_id AT2G35930.1  
At2g35940	chr2:015090857	0.0	C/15090857-15091699,15090151-15090539,15090006-15090066,15089171-15089920	AT2G35940.1  CDS  gene_syn BEL1-LIKE HOMEODOMAIN 1, BLH1, EDA29, F11F19.15, F11F19_15, embryo sac development arrest 29  gene BLH1  function Encodes a member of the BEL-like homeodomain protein family. Ecotopic expression in the embryo sac leads to defects in nuclear migration and cellularization and embryo sacs with multiple egg cells. Loss of function alleles have no female gametophyte defects. The ecotopic expression phenotype requires KNAT3 because it can be suppressed by loss of KNAT3 function alleles. Localized to the nucleus but interaction with OFP1 relocates it to the cytoplasm.  go_component nucleus|GO:0005634|15781858|IDA  go_component cytoplasm|GO:0005737|15781858|IDA  go_process response to symbiotic fungus|GO:0009610|15710607|IEP  go_process response to symbiotic fungus|GO:0009610|17397506|IEP  go_process response to abscisic acid stimulus|GO:0009737|12432076|IEP  go_process polar nucleus fusion|GO:0010197|15634699|IMP  go_function DNA binding|GO:0003677|15710607|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein homodimerization activity|GO:0042803|15781858|IPI  go_function protein heterodimerization activity|GO:0046982|15781858|IPI  product BLH1 (BEL1-LIKE HOMEODOMAIN 1); DNA binding / protein heterodimerization/ protein homodimerization/ transcription factor  note BEL1-LIKE HOMEODOMAIN 1 (BLH1); FUNCTIONS IN: transcription factor activity, protein heterodimerization activity, protein homodimerization activity, DNA binding; INVOLVED IN: polar nucleus fusion, response to symbiotic fungus, response to abscisic acid stimulus; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BLH6 (BELL1-LIKE HOMEODOMAIN 6); DNA binding / transcription factor (TAIR:AT4G34610.2); Has 75283 Blast hits to 12874 proteins in 339 species: Archae - 28; Bacteria - 69; Metazoa - 3339; Fungi - 1911; Plants - 2081; Viruses - 2; Other Eukaryotes - 67853 (source: NCBI BLink).  protein_id AT2G35940.1p  transcript_id AT2G35940.1  protein_id AT2G35940.1p  transcript_id AT2G35940.1  
At2g35940	chr2:015090857	0.0	C/15090857-15091699,15090151-15090539,15090006-15090066,15089171-15089920	AT2G35940.2  CDS  gene_syn BEL1-LIKE HOMEODOMAIN 1, BLH1, EDA29, F11F19.15, F11F19_15, embryo sac development arrest 29  gene BLH1  function Encodes a member of the BEL-like homeodomain protein family. Ecotopic expression in the embryo sac leads to defects in nuclear migration and cellularization and embryo sacs with multiple egg cells. Loss of function alleles have no female gametophyte defects. The ecotopic expression phenotype requires KNAT3 because it can be suppressed by loss of KNAT3 function alleles. Localized to the nucleus but interaction with OFP1 relocates it to the cytoplasm.  go_component nucleus|GO:0005634|15781858|IDA  go_component cytoplasm|GO:0005737|15781858|IDA  go_process response to symbiotic fungus|GO:0009610|15710607|IEP  go_process response to symbiotic fungus|GO:0009610|17397506|IEP  go_process response to abscisic acid stimulus|GO:0009737|12432076|IEP  go_process polar nucleus fusion|GO:0010197|15634699|IMP  go_function DNA binding|GO:0003677|15710607|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein homodimerization activity|GO:0042803|15781858|IPI  go_function protein heterodimerization activity|GO:0046982|15781858|IPI  product BLH1 (BEL1-LIKE HOMEODOMAIN 1); DNA binding / protein heterodimerization/ protein homodimerization/ transcription factor  note BEL1-LIKE HOMEODOMAIN 1 (BLH1); FUNCTIONS IN: transcription factor activity, protein heterodimerization activity, protein homodimerization activity, DNA binding; INVOLVED IN: polar nucleus fusion, response to symbiotic fungus, response to abscisic acid stimulus; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BLH6 (BELL1-LIKE HOMEODOMAIN 6); DNA binding / transcription factor (TAIR:AT4G34610.2); Has 75283 Blast hits to 12874 proteins in 339 species: Archae - 28; Bacteria - 69; Metazoa - 3339; Fungi - 1911; Plants - 2081; Viruses - 2; Other Eukaryotes - 67853 (source: NCBI BLink).  protein_id AT2G35940.2p  transcript_id AT2G35940.2  protein_id AT2G35940.2p  transcript_id AT2G35940.2  
At2g35940	chr2:015090857	0.0	C/15090857-15091699,15090151-15090539,15090006-15090066,15089171-15089920	AT2G35940.3  CDS  gene_syn BEL1-LIKE HOMEODOMAIN 1, BLH1, EDA29, F11F19.15, F11F19_15, embryo sac development arrest 29  gene BLH1  function Encodes a member of the BEL-like homeodomain protein family. Ecotopic expression in the embryo sac leads to defects in nuclear migration and cellularization and embryo sacs with multiple egg cells. Loss of function alleles have no female gametophyte defects. The ecotopic expression phenotype requires KNAT3 because it can be suppressed by loss of KNAT3 function alleles. Localized to the nucleus but interaction with OFP1 relocates it to the cytoplasm.  go_component nucleus|GO:0005634|15781858|IDA  go_component cytoplasm|GO:0005737|15781858|IDA  go_process response to symbiotic fungus|GO:0009610|15710607|IEP  go_process response to symbiotic fungus|GO:0009610|17397506|IEP  go_process response to abscisic acid stimulus|GO:0009737|12432076|IEP  go_process polar nucleus fusion|GO:0010197|15634699|IMP  go_function DNA binding|GO:0003677|15710607|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein homodimerization activity|GO:0042803|15781858|IPI  go_function protein heterodimerization activity|GO:0046982|15781858|IPI  product BLH1 (BEL1-LIKE HOMEODOMAIN 1); DNA binding / protein heterodimerization/ protein homodimerization/ transcription factor  note BEL1-LIKE HOMEODOMAIN 1 (BLH1); FUNCTIONS IN: transcription factor activity, protein heterodimerization activity, protein homodimerization activity, DNA binding; INVOLVED IN: polar nucleus fusion, response to symbiotic fungus, response to abscisic acid stimulus; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BLH6 (BELL1-LIKE HOMEODOMAIN 6); DNA binding / transcription factor (TAIR:AT4G34610.2); Has 75283 Blast hits to 12874 proteins in 339 species: Archae - 28; Bacteria - 69; Metazoa - 3339; Fungi - 1911; Plants - 2081; Viruses - 2; Other Eukaryotes - 67853 (source: NCBI BLink).  protein_id AT2G35940.3p  transcript_id AT2G35940.3  protein_id AT2G35940.3p  transcript_id AT2G35940.3  
At2g35945	chr2:015090867	0.0	W/15090867-15091764	AT2G35945.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G35940  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G35945.1  
At2g35950	chr2:015104833	0.0	W/15104833-15105069,15105158-15105262,15105353-15105518,15105702-15105853	AT2G35950.1  CDS  gene_syn EDA12, F11F19.14, F11F19_14, embryo sac development arrest 12  gene EDA12  go_process megagametogenesis|GO:0009561|15634699|IMP  go_function molecular_function|GO:0003674||ND  product EDA12 (embryo sac development arrest 12)  note embryo sac development arrest 12 (EDA12); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: megagametogenesis; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, E expanded cotyledon stage, LP.08 eight leaves visible; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35950.1p  transcript_id AT2G35950.1  protein_id AT2G35950.1p  transcript_id AT2G35950.1  
At2g35960	chr2:015107150	0.0	W/15107150-15107782	AT2G35960.1  CDS  gene_syn F11F19.13, F11F19_13, NHL12  gene NHL12  function Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not altered in response to cucumber mosaic virus or spermine.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NHL12  note NHL12; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: harpin-induced family protein / HIN1 family protein / harpin-responsive family protein (TAIR:AT3G52470.1); Has 601 Blast hits to 601 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 601; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35960.1p  transcript_id AT2G35960.1  protein_id AT2G35960.1p  transcript_id AT2G35960.1  
At2g35970	chr2:015109007	0.0	W/15109007-15109642	AT2G35970.1  CDS  gene_syn F11F19.12, F11F19_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product harpin-induced family protein / HIN1 family protein / harpin-responsive family protein  note harpin-induced family protein / HIN1 family protein / harpin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: NHL22 (TAIR:AT4G09590.1); Has 560 Blast hits to 560 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 560; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35970.1p  transcript_id AT2G35970.1  protein_id AT2G35970.1p  transcript_id AT2G35970.1  
At2g35980	chr2:015110635	0.0	W/15110635-15111318	AT2G35980.1  CDS  gene_syn F11F19.11, F11F19_11, NDR1/HIN1-LIKE, NHL10, YELLOW-LEAF-SPECIFIC GENE 9, YLS9  gene YLS9  function Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and during senescence. The gene product is localized to the chloroplast.  go_component chloroplast|GO:0009507|14666423|IDA  go_process leaf senescence|GO:0010150|14666423|IMP  go_process defense response to virus|GO:0051607|14666423|IEP  go_process response to other organism|GO:0051707|11230571|TAS  go_function molecular_function|GO:0003674||ND  product YLS9 (YELLOW-LEAF-SPECIFIC GENE 9)  note YELLOW-LEAF-SPECIFIC GENE 9 (YLS9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to virus, leaf senescence, response to other organism; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: NHL2 (TAIR:AT3G11650.1); Has 716 Blast hits to 716 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 716; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G35980.1p  transcript_id AT2G35980.1  protein_id AT2G35980.1p  transcript_id AT2G35980.1  
At2g35990	chr2:015114070	0.0	W/15114070-15114177,15114685-15114782,15115260-15115290,15115433-15115532,15115657-15115727,15116310-15116453,15116558-15116647	AT2G35990.1  CDS  gene_syn F11F19.10, F11F19_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: carboxy-lyase (TAIR:AT5G06300.1); Has 3002 Blast hits to 3001 proteins in 744 species: Archae - 8; Bacteria - 1757; Metazoa - 10; Fungi - 79; Plants - 185; Viruses - 0; Other Eukaryotes - 963 (source: NCBI BLink).  protein_id AT2G35990.1p  transcript_id AT2G35990.1  protein_id AT2G35990.1p  transcript_id AT2G35990.1  
At2g35990	chr2:015114733	0.0	W/15114733-15114782,15115260-15115290,15115433-15115532,15115657-15115727,15116310-15116453,15116558-15116647	AT2G35990.2  CDS  gene_syn F11F19.10, F11F19_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: carboxy-lyase (TAIR:AT5G06300.1); Has 2269 Blast hits to 2268 proteins in 637 species: Archae - 6; Bacteria - 1228; Metazoa - 8; Fungi - 85; Plants - 183; Viruses - 0; Other Eukaryotes - 759 (source: NCBI BLink).  protein_id AT2G35990.2p  transcript_id AT2G35990.2  protein_id AT2G35990.2p  transcript_id AT2G35990.2  
At2g35990	chr2:015114733	0.0	W/15114733-15114782,15115260-15115290,15115433-15115532,15115657-15115727,15116310-15116453,15116558-15116647	AT2G35990.3  CDS  gene_syn F11F19.10, F11F19_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: carboxy-lyase (TAIR:AT5G06300.1).  protein_id AT2G35990.3p  transcript_id AT2G35990.3  protein_id AT2G35990.3p  transcript_id AT2G35990.3  
At2g36000	chr2:015117181	0.0	W/15117181-15118116,15118313-15118333	AT2G36000.2  CDS  gene_syn F11F19.9, F11F19_9  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial transcription termination factor-related / mTERF-related  note mitochondrial transcription termination factor-related / mTERF-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: mitochondrial transcription termination factor-related / mTERF-related (TAIR:AT2G34620.1); Has 375 Blast hits to 273 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 327; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT2G36000.2p  transcript_id AT2G36000.2  protein_id AT2G36000.2p  transcript_id AT2G36000.2  
At2g36000	chr2:015117181	0.0	W/15117181-15118182	AT2G36000.1  CDS  gene_syn F11F19.9, F11F19_9  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial transcription termination factor-related / mTERF-related  note mitochondrial transcription termination factor-related / mTERF-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: mitochondrial transcription termination factor-related / mTERF-related (TAIR:AT2G34620.1); Has 385 Blast hits to 273 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 337; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT2G36000.1p  transcript_id AT2G36000.1  protein_id AT2G36000.1p  transcript_id AT2G36000.1  
At2g36010	chr2:015119688	0.0	W/15119688-15119963,15120000-15120149,15120480-15120666,15120719-15120760,15120939-15121113,15121240-15121291,15121390-15121448,15121687-15121735,15121856-15121921,15122011-15122087,15122261-15122504,15122631-15122700,15122796-15122893	AT2G36010.2  CDS  gene_syn ATE2FA, E2F TRANSCRIPTION FACTOR 3, E2F TRANSCRIPTION FACTOR-3 E2F3, E2F3, F11F19.8, F11F19_8  gene E2F3  function Member of the E2F transcription factors, (cell cycle genes), key components of the cyclin D/retinoblastoma/E2F pathway.  go_component transcription factor complex|GO:0005667||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677|11786543|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  product E2F3 (E2F TRANSCRIPTION FACTOR 3); DNA binding / transcription factor  note E2F TRANSCRIPTION FACTOR 3 (E2F3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: transcription factor complex, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Transcription factor E2F/dimerisation partner (TDP) (InterPro:IPR003316), E2F Family (InterPro:IPR015633); BEST Arabidopsis thaliana protein match is: E2F1; DNA binding / protein binding / transcription factor (TAIR:AT5G22220.2); Has 729 Blast hits to 729 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 527; Fungi - 4; Plants - 121; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT2G36010.2p  transcript_id AT2G36010.2  protein_id AT2G36010.2p  transcript_id AT2G36010.2  
At2g36010	chr2:015119688	0.0	W/15119688-15119963,15120480-15120666,15120801-15120854,15120939-15121113,15121240-15121291,15121390-15121448,15121530-15121580,15121687-15121735,15121856-15121921,15122011-15122087,15122261-15122504,15122631-15122700,15122796-15122893	AT2G36010.3  CDS  gene_syn ATE2FA, E2F TRANSCRIPTION FACTOR 3, E2F TRANSCRIPTION FACTOR-3 E2F3, E2F3, F11F19.8, F11F19_8  gene E2F3  function Member of the E2F transcription factors, (cell cycle genes), key components of the cyclin D/retinoblastoma/E2F pathway.  go_component transcription factor complex|GO:0005667||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677|11786543|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  product E2F3 (E2F TRANSCRIPTION FACTOR 3); DNA binding / transcription factor  note E2F TRANSCRIPTION FACTOR 3 (E2F3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: transcription factor complex, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Transcription factor E2F/dimerisation partner (TDP) (InterPro:IPR003316), E2F Family (InterPro:IPR015633); BEST Arabidopsis thaliana protein match is: E2F1; DNA binding / protein binding / transcription factor (TAIR:AT5G22220.2); Has 786 Blast hits to 756 proteins in 93 species: Archae - 0; Bacteria - 2; Metazoa - 543; Fungi - 6; Plants - 146; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT2G36010.3p  transcript_id AT2G36010.3  protein_id AT2G36010.3p  transcript_id AT2G36010.3  
At2g36010	chr2:015119688	0.0	W/15119688-15119963,15120480-15120666,15120801-15120854,15120939-15121113,15121240-15121291,15121396-15121448,15121530-15121580,15121687-15121735,15121856-15121921,15122011-15122087,15122261-15122504,15122631-15122700,15122796-15122893	AT2G36010.1  CDS  gene_syn ATE2FA, E2F TRANSCRIPTION FACTOR 3, E2F TRANSCRIPTION FACTOR-3 E2F3, E2F3, F11F19.8, F11F19_8  gene E2F3  function Member of the E2F transcription factors, (cell cycle genes), key components of the cyclin D/retinoblastoma/E2F pathway.  go_component transcription factor complex|GO:0005667||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677|11786543|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  product E2F3 (E2F TRANSCRIPTION FACTOR 3); DNA binding / transcription factor  note E2F TRANSCRIPTION FACTOR 3 (E2F3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: transcription factor complex, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Transcription factor E2F/dimerisation partner (TDP) (InterPro:IPR003316), E2F Family (InterPro:IPR015633); BEST Arabidopsis thaliana protein match is: E2F1; DNA binding / protein binding / transcription factor (TAIR:AT5G22220.2); Has 792 Blast hits to 762 proteins in 94 species: Archae - 0; Bacteria - 2; Metazoa - 546; Fungi - 6; Plants - 147; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).  protein_id AT2G36010.1p  transcript_id AT2G36010.1  protein_id AT2G36010.1p  transcript_id AT2G36010.1  
At2g36020	chr2:015125109	0.0	C/15125109-15125140,15124921-15125019,15124438-15124494,15124267-15124330,15124029-15124163,15123836-15123919,15123424-15123729	AT2G36020.1  CDS  gene_syn F11F19.7, F11F19_7, HVA22-LIKE PROTEIN J, HVA22J  gene HVA22J  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product HVA22J (HVA22-LIKE PROTEIN J)  note HVA22-LIKE PROTEIN J (HVA22J); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: TB2/DP1 and HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: abscisic acid-responsive HVA22 family protein (TAIR:AT5G42560.1); Has 1036 Blast hits to 1035 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 559; Fungi - 105; Plants - 308; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT2G36020.1p  transcript_id AT2G36020.1  protein_id AT2G36020.1p  transcript_id AT2G36020.1  
At2g36026	chr2:015127265	0.0	W/15127265-15127816	AT2G36026.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623, plant (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: OFP6 (OVATE FAMILY PROTEIN 6) (TAIR:AT3G52525.1); Has 230 Blast hits to 230 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 228; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G36026.1p  transcript_id AT2G36026.1  protein_id AT2G36026.1p  transcript_id AT2G36026.1  
At2g36030	chr2:015127559	0.0	C/15127559-15127771	AT2G36030.1  CDS  gene_syn F11F19.6, F11F19_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G36030.1p  transcript_id AT2G36030.1  protein_id AT2G36030.1p  transcript_id AT2G36030.1  
At2g36040	chr2:015130646	0.0	C/15130646-15130828	AT2G36040.1  mRNA_TE_gene  pseudo  gene_syn F11F19.5, F11F19_5  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30610.1)  
At2g36050	chr2:015135852	0.0	C/15135852-15136637	AT2G36050.1  CDS  gene_syn ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 15, ATOFP15, F11F19.32, F11F19_32, OFP15  gene OFP15  go_component chloroplast|GO:0009507||IEA  product OFP15 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 15)  note ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 15 (OFP15); LOCATED IN: chloroplast; EXPRESSED IN: sepal, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623, plant (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: OFP18 (OVATE FAMILY PROTEIN 18) (TAIR:AT3G52540.1); Has 131 Blast hits to 131 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 130; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G36050.1p  transcript_id AT2G36050.1  protein_id AT2G36050.1p  transcript_id AT2G36050.1  
At2g36053	chr2:015138996	0.0	W/15138996-15139178	AT2G36053.1  CDS  go_component mitochondrion|GO:0005739||IEA  product unknown protein  note unknown protein; LOCATED IN: mitochondrion; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G36053.1p  transcript_id AT2G36053.1  protein_id AT2G36053.1p  transcript_id AT2G36053.1  
At2g36060	chr2:015143968	0.0	C/15143968-15143998,15143475-15143617,15143226-15143351,15143012-15143152	AT2G36060.2  CDS  gene_syn F11F19.3, F11F19_3, MMS ZWEI HOMOLOGUE 3, MMZ3, UBIQUITIN E2 VARIANT 1C, UEV1C  gene MMZ3  function MMZ3/UEV1C encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1C can form diubiquitin and triubiquitin chains in combination with UBC13A/UBC35 in vitro. It can also functionally complement an mms2 mutation in budding yeast, both by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS, and by reducing the rate of spontaneous DNA mutation. It can also rescue an mms2 ubc13 double mutant in yeast in combination with UBC13A. MMZ3/UEV1C transcripts are found at moderate levels in most plant organs, but cannot be detected in the pollen or 2 days after germination. Transcript levels do not appear to be stress-inducible.  go_component UBC13-MMS2 complex|GO:0031372|18178771|IPI  go_process postreplication repair|GO:0006301|18178771|IGI  go_function ubiquitin-protein ligase activity|GO:0004842|18178771|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|18178771|IPI  product ubiquitin-conjugating enzyme family protein  note MMS ZWEI HOMOLOGUE 3 (MMZ3); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: postreplication repair; LOCATED IN: UBC13-MMS2 complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4); protein binding / ubiquitin-protein ligase (TAIR:AT3G52560.2); Has 1020 Blast hits to 1020 proteins in 180 species: Archae - 0; Bacteria - 0; Metazoa - 562; Fungi - 104; Plants - 216; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).  protein_id AT2G36060.2p  transcript_id AT2G36060.2  protein_id AT2G36060.2p  transcript_id AT2G36060.2  
At2g36060	chr2:015143968	0.0	C/15143968-15143998,15143478-15143617,15143226-15143351,15143012-15143152	AT2G36060.1  CDS  gene_syn F11F19.3, F11F19_3, MMS ZWEI HOMOLOGUE 3, MMZ3, UBIQUITIN E2 VARIANT 1C, UEV1C  gene MMZ3  function MMZ3/UEV1C encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1C can form diubiquitin and triubiquitin chains in combination with UBC13A/UBC35 in vitro. It can also functionally complement an mms2 mutation in budding yeast, both by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS, and by reducing the rate of spontaneous DNA mutation. It can also rescue an mms2 ubc13 double mutant in yeast in combination with UBC13A. MMZ3/UEV1C transcripts are found at moderate levels in most plant organs, but cannot be detected in the pollen or 2 days after germination. Transcript levels do not appear to be stress-inducible.  go_component UBC13-MMS2 complex|GO:0031372|18178771|IPI  go_process postreplication repair|GO:0006301|18178771|IGI  go_function ubiquitin-protein ligase activity|GO:0004842|18178771|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|18178771|IPI  product ubiquitin-conjugating enzyme family protein  note MMS ZWEI HOMOLOGUE 3 (MMZ3); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: postreplication repair; LOCATED IN: UBC13-MMS2 complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4); protein binding / ubiquitin-protein ligase (TAIR:AT3G52560.1); Has 2228 Blast hits to 2228 proteins in 216 species: Archae - 0; Bacteria - 0; Metazoa - 1308; Fungi - 242; Plants - 346; Viruses - 0; Other Eukaryotes - 332 (source: NCBI BLink).  protein_id AT2G36060.1p  transcript_id AT2G36060.1  protein_id AT2G36060.1p  transcript_id AT2G36060.1  
At2g36060	chr2:015143968	0.0	C/15143968-15143998,15143478-15143617,15143229-15143351,15143012-15143152	AT2G36060.3  CDS  gene_syn F11F19.3, F11F19_3, MMS ZWEI HOMOLOGUE 3, MMZ3, UBIQUITIN E2 VARIANT 1C, UEV1C  gene MMZ3  function MMZ3/UEV1C encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1C can form diubiquitin and triubiquitin chains in combination with UBC13A/UBC35 in vitro. It can also functionally complement an mms2 mutation in budding yeast, both by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS, and by reducing the rate of spontaneous DNA mutation. It can also rescue an mms2 ubc13 double mutant in yeast in combination with UBC13A. MMZ3/UEV1C transcripts are found at moderate levels in most plant organs, but cannot be detected in the pollen or 2 days after germination. Transcript levels do not appear to be stress-inducible.  go_component UBC13-MMS2 complex|GO:0031372|18178771|IPI  go_process postreplication repair|GO:0006301|18178771|IGI  go_function ubiquitin-protein ligase activity|GO:0004842|18178771|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|18178771|IPI  product ubiquitin-conjugating enzyme family protein  note MMS ZWEI HOMOLOGUE 3 (MMZ3); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: postreplication repair; LOCATED IN: UBC13-MMS2 complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4); protein binding / ubiquitin-protein ligase (TAIR:AT3G52560.1); Has 2214 Blast hits to 2214 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 1288; Fungi - 243; Plants - 361; Viruses - 0; Other Eukaryotes - 322 (source: NCBI BLink).  protein_id AT2G36060.3p  transcript_id AT2G36060.3  protein_id AT2G36060.3p  transcript_id AT2G36060.3  
At2g36070	chr2:015147821	0.0	C/15147821-15147895,15147632-15147738,15147468-15147551,15147298-15147373,15146963-15147007,15146489-15146863,15146340-15146408,15146164-15146228,15146007-15146075,15145860-15145932,15145675-15145779,15145486-15145557,15145339-15145401,15145119-15145250	AT2G36070.1  CDS  gene_syn ATTIM44-2, F11F19.2, F11F19_2  gene ATTIM44-2  function One of two genes in Arabidopsis that encode a putative subunit of the mitochondrial inner membrane translocase complex. TIM44 subunit is thought to provide the energy for translocation via hydrolysis of ATP.  go_component mitochondrion|GO:0005739|18385124|IDA  go_component mitochondrion|GO:0005739|14730085|IDA  go_component mitochondrial inner membrane|GO:0005743|14730085|IDA  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744|12692332|TAS  go_process protein targeting to mitochondrion|GO:0006626|12692332|TAS  go_function protein-transmembrane transporting ATPase activity|GO:0015462|12692332|TAS  product ATTIM44-2; protein-transmembrane transporting ATPase  note ATTIM44-2; FUNCTIONS IN: protein-transmembrane transporting ATPase activity; INVOLVED IN: protein targeting to mitochondrion; LOCATED IN: mitochondrion, mitochondrial inner membrane, mitochondrial inner membrane presequence translocase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial import inner membrane translocase, subunit Tim44 (InterPro:IPR007379); BEST Arabidopsis thaliana protein match is: ATTIM44-1; protein-transmembrane transporting ATPase (TAIR:AT2G20510.1); Has 1119 Blast hits to 1101 proteins in 257 species: Archae - 0; Bacteria - 221; Metazoa - 210; Fungi - 102; Plants - 28; Viruses - 0; Other Eukaryotes - 558 (source: NCBI BLink).  protein_id AT2G36070.1p  transcript_id AT2G36070.1  protein_id AT2G36070.1p  transcript_id AT2G36070.1  
At2g36080	chr2:015150890	0.0	C/15150890-15151411	AT2G36080.2  CDS  gene_syn F9C22.1  function Encodes a plant-specific B3 DNA-binding domain transcription factor. Has transcription repressor activity.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component cellular_component|GO:0005575||ND  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription repressor activity|GO:0016564|19324928|IDA  product DNA-binding protein, putative  note DNA-binding protein, putative; FUNCTIONS IN: transcription repressor activity, transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT5G06250.2); Has 737 Blast hits to 735 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 737; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G36080.2p  transcript_id AT2G36080.2  protein_id AT2G36080.2p  transcript_id AT2G36080.2  
At2g36080	chr2:015150907	0.0	C/15150907-15151411,15149624-15149814,15148612-15148650	AT2G36080.1  CDS  gene_syn F9C22.1  function Encodes a plant-specific B3 DNA-binding domain transcription factor. Has transcription repressor activity.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component cellular_component|GO:0005575||ND  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription repressor activity|GO:0016564|19324928|IDA  product DNA-binding protein, putative  note DNA-binding protein, putative; FUNCTIONS IN: transcription repressor activity, transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT5G06250.1); Has 739 Blast hits to 737 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 739; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G36080.1p  transcript_id AT2G36080.1  protein_id AT2G36080.1p  transcript_id AT2G36080.1  
At2g36090	chr2:015158631	0.0	W/15158631-15159584	AT2G36090.1  CDS  gene_syn F9C22.2, F9C22_2  go_process biological_process|GO:0008150||ND  product F-box family protein  note F-box family protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G27310.1); Has 56 Blast hits to 56 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G36090.1p  transcript_id AT2G36090.1  protein_id AT2G36090.1p  transcript_id AT2G36090.1  
At2g36100	chr2:015160389	0.0	C/15160389-15160669,15160046-15160169,15159744-15159959	AT2G36100.1  CDS  gene_syn F9C22.3, F9C22_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane family protein  note integral membrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT5G06200.1); Has 259 Blast hits to 259 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 259; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G36100.1p  transcript_id AT2G36100.1  protein_id AT2G36100.1p  transcript_id AT2G36100.1  
At2g36110	chr2:015161877	0.0	W/15161877-15162596	AT2G36110.1  CDS  gene_syn F9C22.4, F9C22_4  go_component intracellular|GO:0005622||IEA  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function 3 -5  exonuclease activity|GO:0008408||IEA  go_component intracellular|GO:0005622||ISS  go_function nucleic acid binding|GO:0003676||ISS  go_function 3 -5  exonuclease activity|GO:0008408||ISS  product 3 -5  exonuclease domain-containing protein  note 3 -5  exonuclease domain-containing protein; FUNCTIONS IN: 3 -5  exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), 3&apos;-5&apos; exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: 3 -5  exonuclease/ nucleic acid binding (TAIR:AT3G12460.1); Has 300 Blast hits to 291 proteins in 65 species: Archae - 0; Bacteria - 9; Metazoa - 154; Fungi - 4; Plants - 116; Viruses - 3; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT2G36110.1p  transcript_id AT2G36110.1  protein_id AT2G36110.1p  transcript_id AT2G36110.1  
At2g36120	chr2:015165468	0.0	W/15165468-15166235	AT2G36120.1  CDS  gene_syn DEFECTIVELY ORGANIZED TRIBUTARIES 1, DOT1, F9C22.5, F9C22_5  gene DOT1  function Encodes a glycine rich protein that is involved in leaf vascular patterning. dot1 mutants have an aberrant open-class venation pattern in leaves and cotyledons, as well as several other leaf development defects.  go_component endomembrane system|GO:0012505||IEA  go_process phloem or xylem histogenesis|GO:0010087|18643975|IMP  go_process leaf vascular tissue pattern formation|GO:0010305|18643975|IMP  go_process cotyledon vascular tissue pattern formation|GO:0010588|18643975|IMP  go_process leaf development|GO:0048366|18643975|IMP  product DOT1 (DEFECTIVELY ORGANIZED TRIBUTARIES 1)  note DEFECTIVELY ORGANIZED TRIBUTARIES 1 (DOT1); INVOLVED IN: cotyledon vascular tissue pattern formation, phloem or xylem histogenesis, leaf development, leaf vascular tissue pattern formation; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage.  protein_id AT2G36120.1p  transcript_id AT2G36120.1  protein_id AT2G36120.1p  transcript_id AT2G36120.1  
At2g36130	chr2:015166863	0.0	W/15166863-15166934,15167152-15167247,15167351-15167412,15167778-15167911,15168032-15168116,15168214-15168259	AT2G36130.1  CDS  gene_syn F9C22.6, F9C22_6  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative  note peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: CYP71 (CYCLOPHILIN71); chromatin binding / histone binding / peptidyl-prolyl cis-trans isomerase (TAIR:AT3G44600.1); Has 12476 Blast hits to 12426 proteins in 1530 species: Archae - 82; Bacteria - 4056; Metazoa - 2344; Fungi - 974; Plants - 734; Viruses - 0; Other Eukaryotes - 4286 (source: NCBI BLink).  protein_id AT2G36130.1p  transcript_id AT2G36130.1  protein_id AT2G36130.1p  transcript_id AT2G36130.1  
At2g36145	chr2:015168571	0.0	W/15168571-15168840,15168982-15169035,15169137-15169373	AT2G36145.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G36145.1p  transcript_id AT2G36145.1  protein_id AT2G36145.1p  transcript_id AT2G36145.1  
At2g36140	chr2:015168862	0.0	W/15168862-15168935	AT2G36140.1  tRNA  gene_syn 51192.TRNA-ASN-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asn (anticodon: GTT)  transcript_id AT2G36140.1  
At2g36150	chr2:015169578	0.0	W/15169578-15169657	AT2G36150.1  tRNA  gene_syn 51192.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: TAG)  transcript_id AT2G36150.1  
At2g36160	chr2:015169925	0.0	W/15169925-15169927,15170267-15170386,15170465-15170510,15170697-15170782,15170873-15171002,15171092-15171159	AT2G36160.1  CDS  gene_syn F9C22.9, F9C22_9  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S14 (RPS14A)  note 40S ribosomal protein S14 (RPS14A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane, chloroplast, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S11 (InterPro:IPR001971), Ribosomal S11, conserved site (InterPro:IPR018102); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S14 (RPS14B) (TAIR:AT3G11510.1); Has 6247 Blast hits to 6247 proteins in 1750 species: Archae - 169; Bacteria - 2829; Metazoa - 487; Fungi - 108; Plants - 517; Viruses - 0; Other Eukaryotes - 2137 (source: NCBI BLink).  protein_id AT2G36160.1p  transcript_id AT2G36160.1  protein_id AT2G36160.1p  transcript_id AT2G36160.1  
At2g36170	chr2:015172153	0.0	W/15172153-15172255,15172334-15172420,15172524-15172626,15172862-15172928,15173020-15173046	AT2G36170.1  CDS  gene_syn F9C22.10, F9C22_10  go_component nucleolus|GO:0005730|15496452|IDA  go_process translation|GO:0006412||IEA  go_process protein modification process|GO:0006464||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_function protein binding|GO:0005515||ISS  product ubiquitin extension protein 2 (UBQ2) / 60S ribosomal protein L40 (RPL40A)  note ubiquitin extension protein 2 (UBQ2) / 60S ribosomal protein L40 (RPL40A); FUNCTIONS IN: protein binding, structural constituent of ribosome; INVOLVED IN: protein modification process, translation; LOCATED IN: cytosolic large ribosomal subunit, nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L40e (InterPro:IPR001975), Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: UBQ1 (UBIQUITIN EXTENSION PROTEIN 1); protein binding / structural constituent of ribosome (TAIR:AT3G52590.1); Has 9155 Blast hits to 5428 proteins in 614 species: Archae - 0; Bacteria - 7; Metazoa - 4223; Fungi - 953; Plants - 1966; Viruses - 162; Other Eukaryotes - 1844 (source: NCBI BLink).  protein_id AT2G36170.1p  transcript_id AT2G36170.1  protein_id AT2G36170.1p  transcript_id AT2G36170.1  
At2g36180	chr2:015173782	0.0	C/15173782-15174216	AT2G36180.1  CDS  gene_syn F9C22.11, F9C22_11  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calmodulin-related protein, putative  note calmodulin-related protein, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin-related protein, putative (TAIR:AT5G17470.1); Has 16830 Blast hits to 10720 proteins in 1183 species: Archae - 0; Bacteria - 68; Metazoa - 6949; Fungi - 3186; Plants - 3921; Viruses - 0; Other Eukaryotes - 2706 (source: NCBI BLink).  protein_id AT2G36180.1p  transcript_id AT2G36180.1  protein_id AT2G36180.1p  transcript_id AT2G36180.1  
At2g36190	chr2:015177596	0.0	C/15177596-15177785,15176905-15176913,15175959-15176818,15175472-15175878,15175234-15175348,15174951-15175145	AT2G36190.1  CDS  gene_syn Arabidopsis thaliana cell wall invertase 4, AtcwINV4, F9C22.8  gene AtcwINV4  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process sucrose catabolic process, using beta-fructofuranosidase|GO:0019575||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product AtcwINV4 (Arabidopsis thaliana cell wall invertase 4); hydrolase, hydrolyzing O-glycosyl compounds  note Arabidopsis thaliana cell wall invertase 4 (AtcwINV4); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 32 (InterPro:IPR001362), Glycoside hydrolase, family 32, active site (InterPro:IPR018053), Glycosyl hydrolases family 32, N-terminal (InterPro:IPR013148), Glycosyl hydrolase family 32, C-terminal (InterPro:IPR013189), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: AtcwINV2 (Arabidopsis thaliana cell wall invertase 2); hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT3G52600.1); Has 2197 Blast hits to 2175 proteins in 632 species: Archae - 4; Bacteria - 1180; Metazoa - 5; Fungi - 192; Plants - 636; Viruses - 0; Other Eukaryotes - 180 (source: NCBI BLink).  protein_id AT2G36190.1p  transcript_id AT2G36190.1  protein_id AT2G36190.1p  transcript_id AT2G36190.1  
At2g36200	chr2:015185131	0.0	C/15185131-15185189,15184855-15184984,15184613-15184771,15184172-15184521,15183958-15184096,15183753-15183850,15183498-15183654,15183347-15183416,15183111-15183187,15182939-15182992,15182765-15182845,15182572-15182683,15182419-15182505,15182155-15182330,15181853-15182014,15181666-15181773,15181404-15181562,15181241-15181324,15180958-15181163,15180768-15180869,15180530-15180639,15180087-15180427,15179739-15179888	AT2G36200.1  CDS  gene_syn F2H17.19, F2H17_19  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product kinesin motor protein-related  note kinesin motor protein-related; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin motor protein-related (TAIR:AT3G45850.1); Has 28491 Blast hits to 20789 proteins in 970 species: Archae - 132; Bacteria - 1981; Metazoa - 14236; Fungi - 2311; Plants - 1453; Viruses - 92; Other Eukaryotes - 8286 (source: NCBI BLink).  protein_id AT2G36200.1p  transcript_id AT2G36200.1  protein_id AT2G36200.1p  transcript_id AT2G36200.1  
At2g36210	chr2:015186326	0.0	C/15186326-15186733	AT2G36210.1  CDS  gene_syn F2H17.18, F2H17_18  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT4G34780.1); Has 473 Blast hits to 470 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 472; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G36210.1p  transcript_id AT2G36210.1  protein_id AT2G36210.1p  transcript_id AT2G36210.1  
At2g36220	chr2:015192556	0.0	W/15192556-15193347	AT2G36220.1  CDS  gene_syn F2H17.17, F2H17_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52710.1); Has 52 Blast hits to 52 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G36220.1p  transcript_id AT2G36220.1  protein_id AT2G36220.1p  transcript_id AT2G36220.1  
At2g36230	chr2:015195348	0.0	C/15195348-15195509,15195042-15195249,15194853-15194938,15194668-15194769,15194438-15194571,15194267-15194315,15193878-15194051	AT2G36230.1  CDS  gene_syn ALBINO AND PALE GREEN 10, APG10, BBM II ISOMERASE, F2H17.16, F2H17_16, HISN3, PHOSPHORIBOSYLFORMIMINO-5-AMINOIMIDAZOLE CARBOXAMIDE RIBOTIDE ISOMERASE  gene APG10  function Encodes a BBMII isomerase involved in histidine biosynthesis.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|9747713|TAS  go_process histidine biosynthetic process|GO:0000105|9747713|IDA  go_process histidine biosynthetic process|GO:0000105||ISS  go_function 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity|GO:0003949|9747713|IDA  go_function 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity|GO:0003949||ISS  product APG10 (ALBINO AND PALE GREEN 10); 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase  note ALBINO AND PALE GREEN 10 (APG10); FUNCTIONS IN: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity; INVOLVED IN: histidine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060), Histidine biosynthesis (InterPro:IPR006062), Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic (InterPro:IPR011858); Has 3781 Blast hits to 3780 proteins in 814 species: Archae - 148; Bacteria - 1937; Metazoa - 0; Fungi - 96; Plants - 25; Viruses - 0; Other Eukaryotes - 1575 (source: NCBI BLink).  protein_id AT2G36230.1p  transcript_id AT2G36230.1  protein_id AT2G36230.1p  transcript_id AT2G36230.1  
At2g36240	chr2:015195663	0.0	W/15195663-15197156	AT2G36240.1  CDS  gene_syn F2H17.15, F2H17_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G09900.1); Has 18740 Blast hits to 5421 proteins in 159 species: Archae - 3; Bacteria - 12; Metazoa - 272; Fungi - 258; Plants - 17650; Viruses - 2; Other Eukaryotes - 543 (source: NCBI BLink).  protein_id AT2G36240.1p  transcript_id AT2G36240.1  protein_id AT2G36240.1p  transcript_id AT2G36240.1  
At2g36250	chr2:015199300	0.0	C/15199300-15199932,15198835-15199134,15198659-15198749,15198233-15198357,15197938-15198030,15197661-15197855	AT2G36250.1  CDS  gene_syn ATFTSZ2-1, F2H17.14, F2H17_14, FTSZ, FTSZ2-1  gene FTSZ2-1  function Encodes one of two FtsZ proteins, tubulin-like proteins, in Arabidopsis. It is involved in chloroplast division.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|11554751|IDA  go_component chloroplast stroma|GO:0009570|11743110|IDA  go_process chloroplast fission|GO:0010020|9836740|IMP  go_function structural molecule activity|GO:0005198||ISS  go_function protein binding|GO:0005515|16146521|IPI  product FTSZ2-1; protein binding / structural molecule  note FTSZ2-1; FUNCTIONS IN: protein binding, structural molecule activity; INVOLVED IN: chloroplast fission; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cell division protein FtsZ, N-terminal (InterPro:IPR000158), Tubulin/FtsZ, GTPase (InterPro:IPR003008), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: FTSZ2-2; GTP binding / GTPase/ structural molecule (TAIR:AT3G52750.1); Has 7654 Blast hits to 7654 proteins in 1847 species: Archae - 290; Bacteria - 3613; Metazoa - 4; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 3649 (source: NCBI BLink).  protein_id AT2G36250.1p  transcript_id AT2G36250.1  protein_id AT2G36250.1p  transcript_id AT2G36250.1  
At2g36250	chr2:015199300	0.0	C/15199300-15199932,15198835-15199134,15198659-15198749,15198233-15198357,15197938-15198030,15197661-15197855	AT2G36250.2  CDS  gene_syn ATFTSZ2-1, F2H17.14, F2H17_14, FTSZ, FTSZ2-1  gene FTSZ2-1  function Encodes one of two FtsZ proteins, tubulin-like proteins, in Arabidopsis. It is involved in chloroplast division.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|11554751|IDA  go_component chloroplast stroma|GO:0009570|11743110|IDA  go_process chloroplast fission|GO:0010020|9836740|IMP  go_function structural molecule activity|GO:0005198||ISS  go_function protein binding|GO:0005515|16146521|IPI  product FTSZ2-1; protein binding / structural molecule  note FTSZ2-1; FUNCTIONS IN: protein binding, structural molecule activity; INVOLVED IN: chloroplast fission; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cell division protein FtsZ, N-terminal (InterPro:IPR000158), Tubulin/FtsZ, GTPase (InterPro:IPR003008), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: FTSZ2-2; GTP binding / GTPase/ structural molecule (TAIR:AT3G52750.1); Has 7654 Blast hits to 7654 proteins in 1847 species: Archae - 290; Bacteria - 3613; Metazoa - 4; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 3649 (source: NCBI BLink).  protein_id AT2G36250.2p  transcript_id AT2G36250.2  protein_id AT2G36250.2p  transcript_id AT2G36250.2  
At2g36255	chr2:015201668	0.0	C/15201668-15201728,15201402-15201580	AT2G36255.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11393.1); Has 5 Blast hits to 5 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G36255.1p  transcript_id AT2G36255.1  protein_id AT2G36255.1p  transcript_id AT2G36255.1  
At2g36260	chr2:015202786	0.0	W/15202786-15202927,15203238-15203355,15203431-15203500	AT2G36260.1  CDS  gene_syn F2H17.13, F2H17_13  go_component mitochondrion|GO:0005739||IEA  go_process iron-sulfur cluster assembly|GO:0016226||IEA  go_function structural molecule activity|GO:0005198||IEA  go_function iron-sulfur cluster binding|GO:0051536||IEA  product iron-sulfur cluster assembly complex protein, putative  note iron-sulfur cluster assembly complex protein, putative; FUNCTIONS IN: iron-sulfur cluster binding, structural molecule activity; INVOLVED IN: iron-sulfur cluster assembly; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: FeS cluster biogenesis (InterPro:IPR000361), FeS cluster insertion (InterPro:IPR016092); BEST Arabidopsis thaliana protein match is: hesB-like domain-containing protein (TAIR:AT2G16710.1); Has 7479 Blast hits to 7478 proteins in 1103 species: Archae - 25; Bacteria - 3491; Metazoa - 208; Fungi - 122; Plants - 90; Viruses - 0; Other Eukaryotes - 3543 (source: NCBI BLink).  protein_id AT2G36260.1p  transcript_id AT2G36260.1  protein_id AT2G36260.1p  transcript_id AT2G36260.1  
At2g36261	chr2:015203904	0.0	C/15203904-15204146	AT2G36261.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G36261.1p  transcript_id AT2G36261.1  protein_id AT2G36261.1p  transcript_id AT2G36261.1  
At2g36270	chr2:015205441	0.0	C/15205441-15206571,15205288-15205359,15205170-15205199,15204980-15205075	AT2G36270.1  CDS  gene_syn ABA INSENSITIVE 5, ABI5, F2H17.12, F2H17_12, GIA1, GROWTH-INSENSITIVITY TO ABA 1  gene ABI5  function Encodes a member of the basic leucine zipper transcription factor family, involved in ABA signalling during seed maturation and germination. The Arabidopsis abscisic acid (ABA)-insensitive abi5 mutants have pleiotropic defects in ABA response, including decreased sensitivity to ABA inhibition of germination and altered expression of some ABA-regulated genes. Comparison of seed and ABA-inducible vegetative gene expression in wild-type and abi5-1 plants indicates that ABI5 regulates a subset of late embryogenesis-abundant genes during both developmental stages.  go_component nucleus|GO:0005634|15642716|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|11019812|TAS  go_process response to stress|GO:0006950|10636868|TAS  go_process response to water deprivation|GO:0009414|11287670|IEP  go_process response to salt stress|GO:0009651|11287670|IEP  go_process response to abscisic acid stimulus|GO:0009737|11287670|IEP  go_process response to abscisic acid stimulus|GO:0009737|11287670|IMP  go_process response to abscisic acid stimulus|GO:0009737|18941053|IEP  go_process response to gibberellin stimulus|GO:0009739|18941053|IEP  go_process seed germination|GO:0009845|18941053|IEP  go_process sugar mediated signaling|GO:0010182|12663220|TAS  go_process negative regulation of seed germination|GO:0010187|18941053|IMP  go_process response to chitin|GO:0010200|17722694|IEP  go_process positive regulation of gene-specific transcription|GO:0043193|19207209|IDA  go_process seed development|GO:0048316|10760247|IMP  go_function DNA binding|GO:0003677|11489176|IDA  go_function transcription factor activity|GO:0003700|10760247|TAS  go_function transcription factor activity|GO:0003700|11019812|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription activator activity|GO:0016563|10636868|TAS  go_function transcription activator activity|GO:0016563|16463099|IDA  go_function transcription activator activity|GO:0016563|19207209|IDA  product ABI5 (ABA INSENSITIVE 5); DNA binding / transcription activator/ transcription factor  note ABA INSENSITIVE 5 (ABI5); FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: in 12 processes; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: ABF1 (ABSCISIC ACID RESPONSIVE ELEMENT-BINDING FACTOR 1); DNA binding / protein binding / transcription activator/ transcription factor (TAIR:AT1G49720.1); Has 3203 Blast hits to 2787 proteins in 281 species: Archae - 2; Bacteria - 319; Metazoa - 852; Fungi - 222; Plants - 1047; Viruses - 12; Other Eukaryotes - 749 (source: NCBI BLink).  protein_id AT2G36270.1p  transcript_id AT2G36270.1  protein_id AT2G36270.1p  transcript_id AT2G36270.1  
At2g36280	chr2:015208402	0.0	C/15208402-15208438	AT2G36280.1  tRNA  gene_syn 51063.TRNA-TYR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT2G36280.1  
At2g36290	chr2:015210723	0.0	C/15210723-15210768,15209899-15210161,15209599-15209810,15209249-15209516,15208867-15209172	AT2G36290.1  CDS  gene_syn F2H17.10, F2H17_10  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: esterase/lipase/thioesterase family protein (TAIR:AT1G74300.1); Has 557 Blast hits to 555 proteins in 128 species: Archae - 11; Bacteria - 242; Metazoa - 0; Fungi - 39; Plants - 185; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT2G36290.1p  transcript_id AT2G36290.1  protein_id AT2G36290.1p  transcript_id AT2G36290.1  
At2g36295	chr2:015211755	0.0	W/15211755-15212096	AT2G36295.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G36295.1p  transcript_id AT2G36295.1  protein_id AT2G36295.1p  transcript_id AT2G36295.1  
At2g36300	chr2:015213362	0.0	C/15213362-15214129	AT2G36300.1  CDS  gene_syn F2H17.9, F2H17_9  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane Yip1 family protein  note integral membrane Yip1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Yip1 domain (InterPro:IPR006977); BEST Arabidopsis thaliana protein match is: integral membrane Yip1 family protein (TAIR:AT3G52760.1); Has 503 Blast hits to 503 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 288; Fungi - 81; Plants - 66; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT2G36300.1p  transcript_id AT2G36300.1  protein_id AT2G36300.1p  transcript_id AT2G36300.1  
At2g36305	chr2:015214607	0.0	W/15214607-15214816,15215125-15215184,15215270-15215476,15215650-15215761,15215864-15215935,15216011-15216073,15216159-15216236,15216316-15216449	AT2G36305.1  CDS  gene_syn ARABIDOPSIS THALIANA FARNESYLATED PROTEIN-CONVERTING ENZYME 2, ARABIDOPSIS THALIANA FARNESYLATED PROTEIN-CONVERTING ENZYME-2, ATFACE-2, ATFACE2, ATRCE1, FACE2, FARNESYLATED PROTEIN-CONVERTING ENZYME 2, RAS-CONVERTING ENZYME 1, RCE1  gene FACE2  function Encodes an endoprotease involved in the cleavage of prenylated CaaX-box proteins. In vitro, it can cleave a farnesylated tetrapeptide and it can promote membrane-localization of a farnesylated GFP:AtROP9 protein when both are expressed in yeast.  go_component endoplasmic reticulum|GO:0005783|18641086|IDA  go_process proteolysis|GO:0006508||ISS  go_process cellular protein localization|GO:0034613|18641086|IGI  go_process protein maturation by peptide bond cleavage|GO:0051605|12928436|IDA  go_process CAAX-box protein processing|GO:0080120|12928436|IGI  go_function endopeptidase activity|GO:0004175|12928436|IDA  go_function endopeptidase activity|GO:0004175|18641086|IMP  product FACE2 (FARNESYLATED PROTEIN-CONVERTING ENZYME 2); endopeptidase  note FARNESYLATED PROTEIN-CONVERTING ENZYME 2 (FACE2); FUNCTIONS IN: endopeptidase activity; INVOLVED IN: proteolysis, CAAX-box protein processing, cellular protein localization, protein maturation by peptide bond cleavage; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675); Has 240 Blast hits to 240 proteins in 121 species: Archae - 0; Bacteria - 12; Metazoa - 97; Fungi - 80; Plants - 19; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT2G36305.1p  transcript_id AT2G36305.1  protein_id AT2G36305.1p  transcript_id AT2G36305.1  
At2g36307	chr2:015218040	0.0	C/15218040-15219415	AT2G36307.1  ncRNA  gene_syn LITTLE ZIPPER 4, ZPR4  gene ZPR4  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515|18055602|IPI  product ZPR4 (LITTLE ZIPPER 4); other RNA  transcript_id AT2G36307.1  
At2g36310	chr2:015226537	0.0	C/15226537-15226633,15226146-15226261,15225991-15226050,15225672-15225854,15225487-15225591,15225301-15225397,15225102-15225209,15224885-15225020,15224692-15224800	AT2G36310.1  CDS  gene_syn F2H17.8, F2H17_8, URH1, URIDINE-RIBOHYDROLASE 1  gene URH1  go_component cytosol|GO:0005829|19293370|IDA  go_process uridine catabolic process|GO:0006218|19293370|IMP  go_function hydrolase activity|GO:0016787||ISS  go_function uridine nucleosidase activity|GO:0045437|19293370|IDA  go_function adenosine nucleosidase activity|GO:0047622|19293370|IMP  go_function inosine nucleosidase activity|GO:0047724|19293370|IMP  product URH1 (URIDINE-RIBOHYDROLASE 1); adenosine nucleosidase/ hydrolase/ inosine nucleosidase/ uridine nucleosidase  note URIDINE-RIBOHYDROLASE 1 (URH1); FUNCTIONS IN: hydrolase activity, inosine nucleosidase activity, adenosine nucleosidase activity, uridine nucleosidase activity; INVOLVED IN: uridine catabolic process; LOCATED IN: cytosol; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inosine/uridine-preferring nucleoside hydrolase (InterPro:IPR001910); BEST Arabidopsis thaliana protein match is: URH2 (URIDINE-RIBOHYDROLASE 2); hydrolase (TAIR:AT1G05620.1); Has 3465 Blast hits to 3437 proteins in 705 species: Archae - 26; Bacteria - 2051; Metazoa - 165; Fungi - 147; Plants - 92; Viruses - 0; Other Eukaryotes - 984 (source: NCBI BLink).  protein_id AT2G36310.1p  transcript_id AT2G36310.1  protein_id AT2G36310.1p  transcript_id AT2G36310.1  
At2g36320	chr2:015229388	0.0	W/15229388-15229873	AT2G36320.1  CDS  gene_syn F2H17.7, F2H17_7  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product zinc finger (AN1-like) family protein  note zinc finger (AN1-like) family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: zinc finger (AN1-like) family protein (TAIR:AT3G52800.1); Has 766 Blast hits to 751 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 386; Fungi - 2; Plants - 268; Viruses - 6; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT2G36320.1p  transcript_id AT2G36320.1  protein_id AT2G36320.1p  transcript_id AT2G36320.1  
At2g36325	chr2:015231409	0.0	W/15231409-15231466,15231604-15231831,15232190-15232470,15232595-15232895,15233022-15233224	AT2G36325.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  product hydrolase, acting on ester bonds  note hydrolase, acting on ester bonds; FUNCTIONS IN: hydrolase activity, acting on ester bonds; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT5G03610.1); Has 1614 Blast hits to 1604 proteins in 125 species: Archae - 0; Bacteria - 172; Metazoa - 1; Fungi - 3; Plants - 1425; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT2G36325.1p  transcript_id AT2G36325.1  protein_id AT2G36325.1p  transcript_id AT2G36325.1  
At2g36330	chr2:015233620	0.0	W/15233620-15234140,15234537-15234672,15235104-15235298	AT2G36330.1  CDS  gene_syn F2H17.6, F2H17_6  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|11152613|ISS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702); BEST Arabidopsis thaliana protein match is: integral membrane protein, putative (TAIR:AT5G62820.1); Has 132 Blast hits to 130 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 1; Plants - 124; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G36330.1p  transcript_id AT2G36330.1  protein_id AT2G36330.1p  transcript_id AT2G36330.1  
At2g36340	chr2:015235858	0.0	W/15235858-15236076,15236166-15236453,15236541-15236678,15236803-15236910,15236998-15237489	AT2G36340.1  CDS  gene_syn F2H17.5, F2H17_5  go_component cellular_component|GO:0005575||ND  go_function transcription regulator activity|GO:0030528|12535344|TAS  product DNA-binding storekeeper protein-related  note DNA-binding storekeeper protein-related; FUNCTIONS IN: transcription regulator activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: anther, seed; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related (TAIR:AT2G25650.1); Has 3896 Blast hits to 2356 proteins in 229 species: Archae - 6; Bacteria - 179; Metazoa - 1270; Fungi - 276; Plants - 155; Viruses - 174; Other Eukaryotes - 1836 (source: NCBI BLink).  protein_id AT2G36340.1p  transcript_id AT2G36340.1  protein_id AT2G36340.1p  transcript_id AT2G36340.1  
At2g36350	chr2:015238903	0.0	W/15238903-15240887,15241000-15241864	AT2G36350.1  CDS  gene_syn F2H17.4, F2H17_4  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: KIPK (KCBP-interacting protein kinase); kinase/ protein binding / protein kinase (TAIR:AT3G52890.2); Has 93188 Blast hits to 65274 proteins in 2349 species: Archae - 33; Bacteria - 8190; Metazoa - 42732; Fungi - 9812; Plants - 11830; Viruses - 361; Other Eukaryotes - 20230 (source: NCBI BLink).  protein_id AT2G36350.1p  transcript_id AT2G36350.1  protein_id AT2G36350.1p  transcript_id AT2G36350.1  
At2g36355	chr2:015242449	0.0	W/15242449-15242649,15242811-15242921,15243022-15243102,15243202-15243276	AT2G36355.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF662 (InterPro:IPR007033); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52900.1); Has 369 Blast hits to 359 proteins in 84 species: Archae - 4; Bacteria - 19; Metazoa - 144; Fungi - 19; Plants - 78; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT2G36355.1p  transcript_id AT2G36355.1  protein_id AT2G36355.1p  transcript_id AT2G36355.1  
At2g36355	chr2:015242736	0.0	W/15242736-15242921,15243022-15243102,15243202-15243276	AT2G36355.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF662 (InterPro:IPR007033); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52900.1); Has 68 Blast hits to 68 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G36355.2p  transcript_id AT2G36355.2  protein_id AT2G36355.2p  transcript_id AT2G36355.2  
At2g36355	chr2:015242823	0.0	W/15242823-15242921,15243022-15243102,15243202-15243276	AT2G36355.3  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF662 (InterPro:IPR007033); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52900.1).  protein_id AT2G36355.3p  transcript_id AT2G36355.3  protein_id AT2G36355.3p  transcript_id AT2G36355.3  
At2g36360	chr2:015247462	0.0	C/15247462-15247523,15247296-15247393,15246975-15247113,15246858-15246886,15246647-15246743,15246504-15246559,15246308-15246415,15245793-15245849,15245591-15245682,15245375-15245459,15245062-15245214,15244577-15244659,15244304-15244477,15244116-15244231,15243867-15243951,15243461-15243517	AT2G36360.1  CDS  gene_syn F2H17.3, F2H17_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing protein  note kelch repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74150.1); Has 6904 Blast hits to 2957 proteins in 231 species: Archae - 8; Bacteria - 233; Metazoa - 2896; Fungi - 817; Plants - 1292; Viruses - 0; Other Eukaryotes - 1658 (source: NCBI BLink).  protein_id AT2G36360.1p  transcript_id AT2G36360.1  protein_id AT2G36360.1p  transcript_id AT2G36360.1  
At2g36360	chr2:015247462	0.0	C/15247462-15247523,15247296-15247393,15246975-15247113,15246858-15246886,15246647-15246743,15246504-15246559,15246308-15246415,15245793-15245849,15245591-15245682,15245375-15245459,15245062-15245214,15244577-15244659,15244304-15244477,15244116-15244231,15243867-15243951,15243461-15243517	AT2G36360.2  CDS  gene_syn F2H17.3, F2H17_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing protein  note kelch repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74150.1); Has 6904 Blast hits to 2957 proteins in 231 species: Archae - 8; Bacteria - 233; Metazoa - 2896; Fungi - 817; Plants - 1292; Viruses - 0; Other Eukaryotes - 1658 (source: NCBI BLink).  protein_id AT2G36360.2p  transcript_id AT2G36360.2  protein_id AT2G36360.2p  transcript_id AT2G36360.2  
At2g36370	chr2:015247894	0.0	W/15247894-15247946,15248027-15248077,15248159-15248279,15248366-15248507,15248592-15248641,15248821-15248909,15248985-15249090,15249234-15249270,15249350-15249501,15249835-15250318,15250516-15250776,15250855-15251000,15251130-15251477,15251560-15251803,15251904-15251959,15252103-15252183,15252314-15252358,15252436-15252504,15252639-15252800	AT2G36370.1  CDS  gene_syn F2H17.2, F2H17_2  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_function ubiquitin-protein ligase activity|GO:0004842|10945468|ISS  product ubiquitin-protein ligase  note ubiquitin-protein ligase; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: BTB/Kelch-associated (InterPro:IPR011705), BTB/POZ fold (InterPro:IPR011333), Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: F-box family protein (FBL4) (TAIR:AT4G15475.1); Has 3283 Blast hits to 2377 proteins in 152 species: Archae - 0; Bacteria - 51; Metazoa - 2236; Fungi - 227; Plants - 555; Viruses - 16; Other Eukaryotes - 198 (source: NCBI BLink).  protein_id AT2G36370.1p  transcript_id AT2G36370.1  protein_id AT2G36370.1p  transcript_id AT2G36370.1  
At2g36380	chr2:015257583	0.0	W/15257583-15257971,15258073-15258193,15258448-15258621,15258707-15258997,15259077-15259167,15259257-15260157,15260245-15260405,15260494-15260597,15260680-15260845,15260930-15261007,15261081-15261199,15261289-15261621,15261708-15261998,15262077-15262160,15262235-15262368,15262450-15262677,15262762-15262933,15263014-15263268,15263358-15263627	AT2G36380.1  CDS  gene_syn ATPDR6, F1O11.1, F1O11_1, PDR6, PLEIOTROPIC DRUG RESISTANCE 6  gene PDR6  go_process transport|GO:0006810||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product PDR6; ATPase, coupled to transmembrane movement of substances  note PDR6; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 (InterPro:IPR000412), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PDR11 (PLEIOTROPIC DRUG RESISTANCE 11); ATPase, coupled to transmembrane movement of substances (TAIR:AT1G66950.1); Has 217263 Blast hits to 162022 proteins in 2517 species: Archae - 4603; Bacteria - 155739; Metazoa - 8127; Fungi - 4196; Plants - 2940; Viruses - 4; Other Eukaryotes - 41654 (source: NCBI BLink).  protein_id AT2G36380.1p  transcript_id AT2G36380.1  protein_id AT2G36380.1p  transcript_id AT2G36380.1  
At2g36390	chr2:015264283	0.0	W/15264283-15264424,15264877-15265028,15265127-15265362,15265555-15265653,15265810-15265852,15266323-15266382,15266569-15266649,15266739-15266855,15267071-15267154,15267512-15267633,15267779-15267898,15267994-15268123,15268242-15268352,15268470-15268598,15268681-15268784,15268879-15269023,15269155-15269712,15269797-15269940	AT2G36390.1  CDS  gene_syn BE3, BRANCHING ENZYME 3, F1O11.2, F1O11_2, SBE2.1, starch branching enzyme 2.1  gene SBE2.1  function Encodes a starch branching enzyme (EC.2.4.1.18) similar to SBE2 from maize and rice. Expressed throughout plant tissues.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process starch metabolic process|GO:0005982|17028209|IMP  go_process amylopectin biosynthetic process|GO:0010021|8616246|TAS  go_function 1,4-alpha-glucan branching enzyme activity|GO:0003844|17028209|IDA  go_function 1,4-alpha-glucan branching enzyme activity|GO:0003844|8616246|ISS  product SBE2.1 (starch branching enzyme 2.1); 1,4-alpha-glucan branching enzyme  note starch branching enzyme 2.1 (SBE2.1); FUNCTIONS IN: 1,4-alpha-glucan branching enzyme activity; INVOLVED IN: amylopectin biosynthetic process, starch metabolic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 13, N-terminal (InterPro:IPR004193), Immunoglobulin E-set (InterPro:IPR014756), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Alpha-amylase, C-terminal all beta (InterPro:IPR006048), Immunoglobulin-like fold (InterPro:IPR013783), Glycosyl hydrolase, family 13, all-beta (InterPro:IPR013780), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic region (InterPro:IPR006047); BEST Arabidopsis thaliana protein match is: SBE2.2 (starch branching enzyme 2.2); 1,4-alpha-glucan branching enzyme (TAIR:AT5G03650.1); Has 9594 Blast hits to 9505 proteins in 1330 species: Archae - 67; Bacteria - 6668; Metazoa - 411; Fungi - 334; Plants - 954; Viruses - 0; Other Eukaryotes - 1160 (source: NCBI BLink).  protein_id AT2G36390.1p  transcript_id AT2G36390.1  protein_id AT2G36390.1p  transcript_id AT2G36390.1  
At2g36400	chr2:015272404	0.0	C/15272404-15272617,15272114-15272305,15271545-15271899,15270300-15270735	AT2G36400.1  CDS  gene_syn AtGRF3, F1O11.3, F1O11_3, GROWTH-REGULATING FACTOR 3  gene AtGRF3  function Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Mutants result in smaller leaves indicating the role of the gene in leaf development. Expressed in root, shoot and flower.  go_component nucleus|GO:0005634|12974814|ISS  go_process leaf development|GO:0048366|12974814|IGI  go_function transcription activator activity|GO:0016563|12974814|ISS  product AtGRF3 (GROWTH-REGULATING FACTOR 3); transcription activator  note GROWTH-REGULATING FACTOR 3 (AtGRF3); FUNCTIONS IN: transcription activator activity; INVOLVED IN: leaf development; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine-Leucine-Glutamine, QLQ (InterPro:IPR014978), WRC (InterPro:IPR014977); BEST Arabidopsis thaliana protein match is: AtGRF4 (GROWTH-REGULATING FACTOR 4); transcription activator (TAIR:AT3G52910.1); Has 1629 Blast hits to 613 proteins in 61 species: Archae - 0; Bacteria - 53; Metazoa - 546; Fungi - 26; Plants - 365; Viruses - 0; Other Eukaryotes - 639 (source: NCBI BLink).  protein_id AT2G36400.1p  transcript_id AT2G36400.1  protein_id AT2G36400.1p  transcript_id AT2G36400.1  
At2g36402	chr2:015273645	0.0	W/15273645-15274632	AT2G36402.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G36905.1); similar to hypothetical protein MtrDRAFT_AC139526g2v1 [Medicago truncatula] (GB:ABE80133.1); similar to Ribonuclease H [Medicago truncatula] (GB:ABE81233.1); similar to Ribonuclease H [Medicago truncatula] (GB:ABD28505.1); contains InterPro domain Ribonuclease H; (InterPro:IPR002156); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)  
At2g36410	chr2:015279041	0.0	W/15279041-15279355,15279708-15279818,15279997-15280077,15280190-15280270	AT2G36410.1  CDS  gene_syn F1O11.4, F1O11_4  go_component plasma membrane|GO:0005886|17317660|IDA  product unknown protein  note unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF662 (InterPro:IPR007033); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52920.1); Has 2189 Blast hits to 1955 proteins in 271 species: Archae - 54; Bacteria - 194; Metazoa - 967; Fungi - 110; Plants - 133; Viruses - 22; Other Eukaryotes - 709 (source: NCBI BLink).  protein_id AT2G36410.1p  transcript_id AT2G36410.1  protein_id AT2G36410.1p  transcript_id AT2G36410.1  
At2g36410	chr2:015279041	0.0	W/15279041-15279355,15279708-15279818,15279997-15280077,15280199-15280270	AT2G36410.2  CDS  gene_syn F1O11.4, F1O11_4  go_component plasma membrane|GO:0005886|17317660|IDA  product unknown protein  note unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF662 (InterPro:IPR007033); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52920.2); Has 1623 Blast hits to 1503 proteins in 232 species: Archae - 33; Bacteria - 152; Metazoa - 713; Fungi - 89; Plants - 130; Viruses - 7; Other Eukaryotes - 499 (source: NCBI BLink).  protein_id AT2G36410.2p  transcript_id AT2G36410.2  protein_id AT2G36410.2p  transcript_id AT2G36410.2  
At2g36410	chr2:015279041	0.0	W/15279041-15279355,15279708-15279823,15280002-15280077,15280199-15280270	AT2G36410.3  CDS  gene_syn F1O11.4, F1O11_4  go_component plasma membrane|GO:0005886|17317660|IDA  product unknown protein  note unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF662 (InterPro:IPR007033); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52920.2); Has 1017 Blast hits to 978 proteins in 198 species: Archae - 26; Bacteria - 126; Metazoa - 426; Fungi - 54; Plants - 94; Viruses - 1; Other Eukaryotes - 290 (source: NCBI BLink).  protein_id AT2G36410.3p  transcript_id AT2G36410.3  protein_id AT2G36410.3p  transcript_id AT2G36410.3  
At2g36420	chr2:015286498	0.0	W/15286498-15287160,15288224-15288422,15288533-15288990	AT2G36420.1  CDS  gene_syn F1O11.5, F1O11_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G03670.1); Has 11237 Blast hits to 6364 proteins in 349 species: Archae - 8; Bacteria - 288; Metazoa - 5131; Fungi - 1107; Plants - 404; Viruses - 219; Other Eukaryotes - 4080 (source: NCBI BLink).  protein_id AT2G36420.1p  transcript_id AT2G36420.1  protein_id AT2G36420.1p  transcript_id AT2G36420.1  
At2g36430	chr2:015290211	0.0	W/15290211-15291557	AT2G36430.1  CDS  gene_syn F1O11.6, F1O11_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22540.1); Has 508 Blast hits to 461 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 508; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G36430.1p  transcript_id AT2G36430.1  protein_id AT2G36430.1p  transcript_id AT2G36430.1  
At2g36440	chr2:015292648	0.0	W/15292648-15292872	AT2G36440.1  CDS  gene_syn F1O11.7, F1O11_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G36440.1p  transcript_id AT2G36440.1  protein_id AT2G36440.1p  transcript_id AT2G36440.1  
At2g36450	chr2:015294303	0.0	C/15294303-15294857	AT2G36450.1  CDS  gene_syn F1O11.8, F1O11_8, HARDY, HRD  gene HRD  function encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Ectopic overexpression of HRD increases the density of the root network and improves water and salt stress tolerance in Arabidopsis. Overexpression of HRD in rice causes an increase in plant biomass and drought resistance.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function transcription activator activity|GO:0016563||ISS  product HRD (HARDY); DNA binding / transcription activator/ transcription factor  note HARDY (HRD); FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: petal, inflorescence axis, seed; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: CBF1 (C-REPEAT/DRE BINDING FACTOR 1); DNA binding / transcription activator/ transcription factor (TAIR:AT4G25490.1); Has 3704 Blast hits to 3676 proteins in 198 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 3696; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT2G36450.1p  transcript_id AT2G36450.1  protein_id AT2G36450.1p  transcript_id AT2G36450.1  
At2g36460	chr2:015296929	0.0	C/15296929-15297732	AT2G36460.2  CDS  gene_syn F1O11.9, F1O11_9  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function catalytic activity|GO:0003824||IEA  go_function fructose-bisphosphate aldolase activity|GO:0004332||IEA  go_component mitochondrion|GO:0005739|12953116|IDA  go_process pentose-phosphate shunt|GO:0006098||TAS  product fructose-bisphosphate aldolase, putative  note fructose-bisphosphate aldolase, putative; FUNCTIONS IN: fructose-bisphosphate aldolase activity, catalytic activity; INVOLVED IN: response to salt stress, pentose-phosphate shunt; LOCATED IN: mitochondrion, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741); BEST Arabidopsis thaliana protein match is: fructose-bisphosphate aldolase, putative (TAIR:AT3G52930.1); Has 3953 Blast hits to 3949 proteins in 661 species: Archae - 0; Bacteria - 309; Metazoa - 1238; Fungi - 2; Plants - 342; Viruses - 0; Other Eukaryotes - 2062 (source: NCBI BLink).  protein_id AT2G36460.2p  transcript_id AT2G36460.2  protein_id AT2G36460.2p  transcript_id AT2G36460.2  
At2g36460	chr2:015298360	0.0	C/15298360-15298387,15297835-15298062,15296929-15297749	AT2G36460.1  CDS  gene_syn F1O11.9, F1O11_9  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function catalytic activity|GO:0003824||IEA  go_function fructose-bisphosphate aldolase activity|GO:0004332||IEA  go_component mitochondrion|GO:0005739|12953116|IDA  go_process pentose-phosphate shunt|GO:0006098||TAS  product fructose-bisphosphate aldolase, putative  note fructose-bisphosphate aldolase, putative; FUNCTIONS IN: fructose-bisphosphate aldolase activity, catalytic activity; INVOLVED IN: response to cadmium ion, response to salt stress, pentose-phosphate shunt; LOCATED IN: mitochondrion, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741); BEST Arabidopsis thaliana protein match is: fructose-bisphosphate aldolase, putative (TAIR:AT3G52930.1); Has 4431 Blast hits to 4426 proteins in 741 species: Archae - 0; Bacteria - 427; Metazoa - 1277; Fungi - 2; Plants - 339; Viruses - 0; Other Eukaryotes - 2386 (source: NCBI BLink).  protein_id AT2G36460.1p  transcript_id AT2G36460.1  protein_id AT2G36460.1p  transcript_id AT2G36460.1  
At2g36470	chr2:015299385	0.0	C/15299385-15300368	AT2G36470.1  CDS  gene_syn F1O11.10, F1O11_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF868, plant (InterPro:IPR008586); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G27770.1); Has 145 Blast hits to 145 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 141; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G36470.1p  transcript_id AT2G36470.1  protein_id AT2G36470.1p  transcript_id AT2G36470.1  
At2g36480	chr2:015306167	0.0	C/15306167-15306274,15305821-15306078,15305416-15305532,15304897-15305334,15303259-15304809,15302567-15302623	AT2G36480.2  CDS  gene_syn F1O11.23  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc finger (C2H2-type) family protein  note zinc finger (C2H2-type) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), Regulation of nuclear pre-mRNA protein (InterPro:IPR006569), Zinc finger, C2H2-type (InterPro:IPR007087), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: PCFS4 (PCF11P-SIMILAR PROTEIN 4); zinc ion binding (TAIR:AT4G04885.1).  protein_id AT2G36480.2p  transcript_id AT2G36480.2  protein_id AT2G36480.2p  transcript_id AT2G36480.2  
At2g36480	chr2:015306167	0.0	C/15306167-15306274,15305821-15306078,15305416-15305532,15304897-15305334,15303259-15304809,15303114-15303128	AT2G36480.1  CDS  gene_syn F1O11.23  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc finger (C2H2-type) family protein  note zinc finger (C2H2-type) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), Zinc finger, C2H2-like (InterPro:IPR015880), Regulation of nuclear pre-mRNA protein (InterPro:IPR006569), Zinc finger, C2H2-type (InterPro:IPR007087), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: PCFS4 (PCF11P-SIMILAR PROTEIN 4); zinc ion binding (TAIR:AT4G04885.1); Has 1570 Blast hits to 671 proteins in 169 species: Archae - 0; Bacteria - 99; Metazoa - 379; Fungi - 248; Plants - 76; Viruses - 0; Other Eukaryotes - 768 (source: NCBI BLink).  protein_id AT2G36480.1p  transcript_id AT2G36480.1  protein_id AT2G36480.1p  transcript_id AT2G36480.1  
At2g36480	chr2:015306167	0.0	C/15306167-15306274,15305821-15306078,15305416-15305532,15304897-15305334,15303259-15304809,15303118-15303128,15302801-15302915,15302567-15302623	AT2G36480.3  CDS  gene_syn F1O11.23  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc finger (C2H2-type) family protein  note zinc finger (C2H2-type) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), Regulation of nuclear pre-mRNA protein (InterPro:IPR006569), Zinc finger, C2H2-type (InterPro:IPR007087), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: PCFS4 (PCF11P-SIMILAR PROTEIN 4); zinc ion binding (TAIR:AT4G04885.1).  protein_id AT2G36480.3p  transcript_id AT2G36480.3  protein_id AT2G36480.3p  transcript_id AT2G36480.3  
At2g36485	chr2:015307059	0.0	C/15307059-15307535	AT2G36485.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: PCFS4 (PCF11P-SIMILAR PROTEIN 4); zinc ion binding (TAIR:AT4G04885.1); Has 87 Blast hits to 87 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 30; Fungi - 33; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G36485.1p  transcript_id AT2G36485.1  protein_id AT2G36485.1p  transcript_id AT2G36485.1  
At2g36490	chr2:015314139	0.0	C/15314139-15314272,15313940-15314055,15312707-15313837,15312242-15312613,15312046-15312136,15311055-15311952,15310901-15310980,15310694-15310778,15310525-15310616,15310380-15310448,15310254-15310290,15310087-15310169,15309503-15309928,15309264-15309300,15309115-15309172,15308902-15309041,15308757-15308822,15308561-15308675,15308437-15308475,15308259-15308371	AT2G36490.1  CDS  gene_syn DEMETER-LIKE 1, DML1, F1O11.12, F1O11_12, REPRESSOR OF SILENCING1, ROS1  gene DML1  function A repressor of transcriptional gene silencing. Functions by demethylating the target promoter DNA. Interacts physically with RPA2/ROR1. In the ros1 mutants, an increase in methylation is observed in a number of gene promoters. Among the loci affected by ros1, a few (RD29A and At1g76930) are affected in cytosine methylation in all sequence contexts (CpG, CpNpG or CpNpN), although many others are affected primarily in non-CpG contexts.  go_component nucleus|GO:0005634|12526807|IDA  go_process DNA repair|GO:0006281|12526807|IMP  go_process DNA methylation|GO:0006306|16624880|IDA  go_process chromatin silencing|GO:0006342|12526807|IMP  go_process negative regulation of chromatin silencing|GO:0031936|17208187|IMP  go_process DNA demethylation|GO:0080111|17208187|IMP  go_function DNA-(apurinic or apyrimidinic site) lyase activity|GO:0003906|12526807|ISS  go_function DNA-(apurinic or apyrimidinic site) lyase activity|GO:0003906|16624880|IDA  go_function protein binding|GO:0005515|16271867|IPI  go_function DNA N-glycosylase activity|GO:0019104|12526807|ISS  go_function DNA N-glycosylase activity|GO:0019104|16162337|TAS  go_function DNA N-glycosylase activity|GO:0019104|16624880|IDA  product DML1 (DEMETER-LIKE 1); DNA N-glycosylase/ DNA-(apurinic or apyrimidinic site) lyase/ protein binding  note DEMETER-LIKE 1 (DML1); FUNCTIONS IN: protein binding, DNA N-glycosylase activity, DNA-(apurinic or apyrimidinic site) lyase activity; INVOLVED IN: DNA repair, negative regulation of chromatin silencing, chromatin silencing, DNA methylation, DNA demethylation; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Endonuclease III, iron-sulphur binding, conserved site-1 (InterPro:IPR004035), Endonuclease III-like, iron-sulphur cluster loop (InterPro:IPR003651), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: DML2 (DEMETER-LIKE 2); 4 iron, 4 sulfur cluster binding / catalytic/ endonuclease (TAIR:AT3G10010.1); Has 2362 Blast hits to 2194 proteins in 754 species: Archae - 124; Bacteria - 1231; Metazoa - 234; Fungi - 120; Plants - 170; Viruses - 0; Other Eukaryotes - 483 (source: NCBI BLink).  protein_id AT2G36490.1p  transcript_id AT2G36490.1  protein_id AT2G36490.1p  transcript_id AT2G36490.1  
At2g36500	chr2:015318473	0.0	W/15318473-15320083	AT2G36500.1  CDS  gene_syn F1O11.13, F1O11_13  product CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein  note CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (TAIR:AT3G52950.1); Has 4354 Blast hits to 3459 proteins in 798 species: Archae - 506; Bacteria - 2822; Metazoa - 4; Fungi - 86; Plants - 161; Viruses - 0; Other Eukaryotes - 775 (source: NCBI BLink).  protein_id AT2G36500.1p  transcript_id AT2G36500.1  protein_id AT2G36500.1p  transcript_id AT2G36500.1  
At2g36510	chr2:015320234	0.0	W/15320234-15320316	AT2G36510.1  tRNA  gene_syn 51064.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: TAA)  transcript_id AT2G36510.1  
At2g36520	chr2:015320385	0.0	C/15320385-15320467	AT2G36520.1  tRNA  gene_syn 51064.TRNA-LEU-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: TAA)  transcript_id AT2G36520.1  
At2g36530	chr2:015323721	0.0	C/15323721-15323786,15323237-15323365,15323092-15323139,15322901-15322987,15322732-15322812,15322418-15322600,15322134-15322271,15321969-15322046,15321679-15321873,15321390-15321581,15321245-15321301,15321081-15321161	AT2G36530.1  CDS  gene_syn F1O11.16, F1O11_16, LOS2  gene LOS2  function Involved in light-dependent cold tolerance and encodes an enolase. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function copper ion binding|GO:0005507|16526091|IDA  go_component nucleus|GO:0005634|12032082|IDA  go_component cytoplasm|GO:0005737|12032082|IDA  go_component mitochondrion|GO:0005739|12953116|IDA  go_component mitochondrial envelope|GO:0005740|12953116|IDA  go_process response to cold|GO:0009409|12032082|IMP  go_process response to light stimulus|GO:0009416|12032082|IMP  go_process response to abscisic acid stimulus|GO:0009737|18768909|IEP  go_function phosphopyruvate hydratase activity|GO:0004634|12032082|IDA  go_function phosphopyruvate hydratase activity|GO:0004634|12032082|ISS  go_function phosphopyruvate hydratase activity|GO:0004634||ISS  product LOS2; copper ion binding / phosphopyruvate hydratase  note LOS2; FUNCTIONS IN: phosphopyruvate hydratase activity, copper ion binding; INVOLVED IN: response to cadmium ion, response to salt stress, response to light stimulus, response to cold, response to abscisic acid stimulus; LOCATED IN: in 8 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Enolase (InterPro:IPR000941); BEST Arabidopsis thaliana protein match is: enolase, putative (TAIR:AT1G74030.1); Has 9488 Blast hits to 9466 proteins in 2258 species: Archae - 177; Bacteria - 3120; Metazoa - 1402; Fungi - 220; Plants - 161; Viruses - 0; Other Eukaryotes - 4408 (source: NCBI BLink).  protein_id AT2G36530.1p  transcript_id AT2G36530.1  protein_id AT2G36530.1p  transcript_id AT2G36530.1  
At2g36540	chr2:015325237	0.0	W/15325237-15325492,15325572-15325688,15325896-15326056,15326147-15326207,15326295-15326449	AT2G36540.1  CDS  gene_syn F1O11.17, F1O11_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NLI interacting factor (NIF) family protein  note NLI interacting factor (NIF) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36550.1); Has 129 Blast hits to 129 proteins in 37 species: Archae - 0; Bacteria - 10; Metazoa - 2; Fungi - 28; Plants - 73; Viruses - 2; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT2G36540.1p  transcript_id AT2G36540.1  protein_id AT2G36540.1p  transcript_id AT2G36540.1  
At2g36550	chr2:015327547	0.0	W/15327547-15327834,15328248-15328409,15328495-15328555,15328648-15328802	AT2G36550.1  CDS  gene_syn F1O11.18, F1O11_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; BEST Arabidopsis thaliana protein match is: NLI interacting factor (NIF) family protein (TAIR:AT2G36540.1); Has 49 Blast hits to 49 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 2; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G36550.1p  transcript_id AT2G36550.1  protein_id AT2G36550.1p  transcript_id AT2G36550.1  
At2g36560	chr2:015332168	0.0	C/15332168-15332447,15331763-15331830,15330665-15330796,15330348-15330515,15329193-15330269	AT2G36560.1  CDS  gene_syn F1O11.19, F1O11_19  product DNA-binding protein-related  note DNA-binding protein-related; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175); BEST Arabidopsis thaliana protein match is: DNA-binding family protein (TAIR:AT4G12080.1); Has 3292 Blast hits to 1079 proteins in 149 species: Archae - 0; Bacteria - 52; Metazoa - 615; Fungi - 195; Plants - 400; Viruses - 1; Other Eukaryotes - 2029 (source: NCBI BLink).  protein_id AT2G36560.1p  transcript_id AT2G36560.1  protein_id AT2G36560.1p  transcript_id AT2G36560.1  
At2g36570	chr2:015335583	0.0	W/15335583-15336915,15337040-15337725	AT2G36570.1  CDS  gene_syn F1O11.20, F1O11_20  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT1G68400.1); Has 92055 Blast hits to 74929 proteins in 3005 species: Archae - 73; Bacteria - 7491; Metazoa - 32282; Fungi - 4868; Plants - 34877; Viruses - 258; Other Eukaryotes - 12206 (source: NCBI BLink).  protein_id AT2G36570.1p  transcript_id AT2G36570.1  protein_id AT2G36570.1p  transcript_id AT2G36570.1  
At2g36571	chr2:015337989	0.0	C/15337989-15338129	AT2G36571.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G36571.1p  transcript_id AT2G36571.1  protein_id AT2G36571.1p  transcript_id AT2G36571.1  
At2g36580	chr2:015339253	0.0	W/15339253-15339321,15339502-15339598,15339682-15339779,15339874-15340029,15340128-15340205,15340316-15340447,15340565-15340645,15340774-15340845,15340949-15341038,15341182-15341326,15341450-15341538,15341657-15341752,15341849-15341916,15342005-15342104,15342432-15342491,15342629-15342781	AT2G36580.1  CDS  gene_syn F1O11.21, F1O11_21  go_component plasma membrane|GO:0005886|17317660|IDA  go_process glycolysis|GO:0006096||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function catalytic activity|GO:0003824||IEA  go_function pyruvate kinase activity|GO:0004743||IEA  go_function potassium ion binding|GO:0030955||IEA  go_process glycolysis|GO:0006096||ISS  go_function pyruvate kinase activity|GO:0004743||ISS  product pyruvate kinase, putative  note pyruvate kinase, putative; FUNCTIONS IN: pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity; INVOLVED IN: glycolysis; LOCATED IN: plasma membrane; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate kinase, alpha/beta (InterPro:IPR015794), Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), Pyruvate kinase (InterPro:IPR001697), Pyruvate kinase, C-terminal-like (InterPro:IPR015795), Pyruvate kinase, barrel (InterPro:IPR015793); BEST Arabidopsis thaliana protein match is: pyruvate kinase, putative (TAIR:AT3G52990.1); Has 6484 Blast hits to 6462 proteins in 1513 species: Archae - 99; Bacteria - 3169; Metazoa - 478; Fungi - 168; Plants - 284; Viruses - 0; Other Eukaryotes - 2286 (source: NCBI BLink).  protein_id AT2G36580.1p  transcript_id AT2G36580.1  protein_id AT2G36580.1p  transcript_id AT2G36580.1  
At2g36590	chr2:015345086	0.0	C/15345086-15345167,15344572-15344796,15344402-15344496,15344126-15344315,15343906-15344030,15343563-15343778,15343122-15343499	AT2G36590.1  CDS  gene_syn ATPROT3, F1O11.22, F1O11_22, PROLINE TRANSPORTER 3, ProT3  gene ProT3  function Encodes a proline transporter with affinity for gly betaine, proline, and GABA. Protein is expressed in leaves, flowers and siliques but to a much lesser extent in roots.  go_component plasma membrane|GO:0005886|15618414|IDA  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_process proline transport|GO:0015824|15618414|IGI  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  go_function L-proline transmembrane transporter activity|GO:0015193|15618414|IGI  product ProT3 (PROLINE TRANSPORTER 3); L-proline transmembrane transporter/ amino acid transmembrane transporter  note PROLINE TRANSPORTER 3 (ProT3); FUNCTIONS IN: amino acid transmembrane transporter activity, L-proline transmembrane transporter activity; INVOLVED IN: proline transport, amino acid transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: PROT1 (PROLINE TRANSPORTER 1); L-proline transmembrane transporter/ amino acid transmembrane transporter (TAIR:AT2G39890.2); Has 976 Blast hits to 975 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 176; Fungi - 96; Plants - 686; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT2G36590.1p  transcript_id AT2G36590.1  protein_id AT2G36590.1p  transcript_id AT2G36590.1  
At2g36600	chr2:015346160	0.0	W/15346160-15346232	AT2G36600.1  tRNA  gene_syn 51064.TRNA-ARG-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: TCT)  transcript_id AT2G36600.1  
At2g36610	chr2:015349327	0.0	W/15349327-15349411,15349531-15349925,15350011-15350088	AT2G36610.1  CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 22, ATHB22, F13K3.1, F13K3_1  gene ATHB22  function Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ATHB22 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 22); DNA binding / transcription factor  note ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 22 (ATHB22); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: fruit; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: HB51; DNA binding / sequence-specific DNA binding / transcription factor (TAIR:AT5G03790.1); Has 2713 Blast hits to 2712 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 1299; Fungi - 76; Plants - 1309; Viruses - 3; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT2G36610.1p  transcript_id AT2G36610.1  protein_id AT2G36610.1p  transcript_id AT2G36610.1  
At2g36620	chr2:015351809	0.0	C/15351809-15351819,15351247-15351322,15351036-15351137,15350799-15350947,15350548-15350704	AT2G36620.1  CDS  gene_syn F13K3.2, F13K3_2, RPL24A, ribosomal protein L24  gene RPL24A  function RPL24A encodes ribosomal protein L24, homolog of cytosolic RPL24, found in archaea and higher eukaryotes. Arabidopsis has two RPL24 homologs, RPL24A (AT2G36620) and RPL24B (AT3G53020).  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product RPL24A (ribosomal protein L24); structural constituent of ribosome  note ribosomal protein L24 (RPL24A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, ribosome, plasma membrane, chloroplast, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L24e (InterPro:IPR000988); BEST Arabidopsis thaliana protein match is: STV1 (SHORT VALVE1); structural constituent of ribosome (TAIR:AT3G53020.1); Has 978 Blast hits to 964 proteins in 252 species: Archae - 55; Bacteria - 36; Metazoa - 371; Fungi - 204; Plants - 124; Viruses - 0; Other Eukaryotes - 188 (source: NCBI BLink).  protein_id AT2G36620.1p  transcript_id AT2G36620.1  protein_id AT2G36620.1p  transcript_id AT2G36620.1  
At2g36630	chr2:015354895	0.0	C/15354895-15355050,15354503-15354662,15354159-15354421,15354025-15354073,15353887-15353942,15353726-15353812,15353592-15353642,15353266-15353505,15353081-15353174,15352767-15352990	AT2G36630.1  CDS  gene_syn F13K3.3, F13K3_3  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  product unknown protein  note unknown protein; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF81 (InterPro:IPR002781); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25737.1); Has 1076 Blast hits to 1022 proteins in 283 species: Archae - 64; Bacteria - 473; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 449 (source: NCBI BLink).  protein_id AT2G36630.1p  transcript_id AT2G36630.1  protein_id AT2G36630.1p  transcript_id AT2G36630.1  
At2g36632	chr2:015355648	0.0	W/15355648-15355764	AT2G36632.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G36632.1p  transcript_id AT2G36632.1  protein_id AT2G36632.1p  transcript_id AT2G36632.1  
At2g36640	chr2:015357662	0.0	C/15357662-15358552,15357396-15357574,15357019-15357295	AT2G36640.1  CDS  gene_syn ATECP63, EMBRYONIC CELL PROTEIN 63, F13K3.4, F13K3_4, LEA  gene ATECP63  function Encodes putative phosphotyrosine protein belonging to late embryogenesis abundant (LEA) protein in group 3 that might be involved in maturation and desiccation tolerance of seeds. RFLP and CAPS mapping place it on chromosome 4 but the nucleotide sequence maps it to chromosome 2.  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||ISS  product ATECP63 (EMBRYONIC CELL PROTEIN 63)  note EMBRYONIC CELL PROTEIN 63 (ATECP63); INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: fruit, seed; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein (InterPro:IPR004238); BEST Arabidopsis thaliana protein match is: late embryogenesis abundant protein, putative / LEA protein, putative (TAIR:AT3G53040.1); Has 22005 Blast hits to 12446 proteins in 1378 species: Archae - 221; Bacteria - 6334; Metazoa - 5286; Fungi - 1685; Plants - 1981; Viruses - 175; Other Eukaryotes - 6323 (source: NCBI BLink).  protein_id AT2G36640.1p  transcript_id AT2G36640.1  protein_id AT2G36640.1p  transcript_id AT2G36640.1  
At2g36650	chr2:015359994	0.0	W/15359994-15360731,15360811-15361194	AT2G36650.1  CDS  gene_syn F13K3.5, F13K3_5  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell, hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1) (TAIR:AT3G25690.1); Has 6069 Blast hits to 4778 proteins in 417 species: Archae - 149; Bacteria - 438; Metazoa - 2557; Fungi - 331; Plants - 197; Viruses - 25; Other Eukaryotes - 2372 (source: NCBI BLink).  protein_id AT2G36650.1p  transcript_id AT2G36650.1  protein_id AT2G36650.1p  transcript_id AT2G36650.1  
At2g36660	chr2:015364167	0.0	C/15364167-15364398,15363666-15363784,15363397-15363590,15363026-15363279,15362833-15362939,15362562-15362751,15362195-15362463,15361988-15362119,15361789-15361914,15361476-15361682	AT2G36660.1  CDS  gene_syn F13K3.6, F13K3_6, PAB7, POLY(A) BINDING PROTEIN 7  gene PAB7  function polyadenylate-binding protein, putative / PABP, putative. Member of the class III family of PABP proteins.  go_function RNA binding|GO:0003723||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product PAB7 (POLY(A) BINDING PROTEIN 7); RNA binding / translation initiation factor  note POLY(A) BINDING PROTEIN 7 (PAB7); FUNCTIONS IN: RNA binding, translation initiation factor activity; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Polyadenylate-binding protein/Hyperplastic disc protein (InterPro:IPR002004), RNA recognition motif, RNP-1 (InterPro:IPR000504), Polyadenylate binding protein, human types 1, 2, 3, 4 (InterPro:IPR006515), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: PAB2 (POLY(A) BINDING 2); RNA binding / translation initiation factor (TAIR:AT4G34110.1); Has 38903 Blast hits to 17223 proteins in 612 species: Archae - 20; Bacteria - 1844; Metazoa - 23015; Fungi - 4527; Plants - 5107; Viruses - 0; Other Eukaryotes - 4390 (source: NCBI BLink).  protein_id AT2G36660.1p  transcript_id AT2G36660.1  protein_id AT2G36660.1p  transcript_id AT2G36660.1  
At2g36670	chr2:015367724	0.0	C/15367724-15368016,15367173-15367302,15366829-15367076,15366496-15366723,15365858-15366020,15365706-15365779,15365513-15365609,15365350-15365413,15365192-15365263,15364949-15365103	AT2G36670.2  CDS  gene_syn F13K3.7, F13K3_7  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Twin arginine translocation signal, Tat (InterPro:IPR017909), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT5G22850.1); Has 3356 Blast hits to 3327 proteins in 290 species: Archae - 0; Bacteria - 0; Metazoa - 1301; Fungi - 643; Plants - 1207; Viruses - 0; Other Eukaryotes - 205 (source: NCBI BLink).  protein_id AT2G36670.2p  transcript_id AT2G36670.2  protein_id AT2G36670.2p  transcript_id AT2G36670.2  
At2g36670	chr2:015367724	0.0	C/15367724-15368016,15367400-15367414,15367173-15367302,15366829-15367076,15366496-15366723,15365858-15366020,15365706-15365779,15365513-15365609,15365350-15365413,15365192-15365263,15364949-15365103	AT2G36670.1  CDS  gene_syn F13K3.7, F13K3_7  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Twin arginine translocation signal, Tat (InterPro:IPR017909), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT5G22850.1); Has 3352 Blast hits to 3323 proteins in 290 species: Archae - 0; Bacteria - 0; Metazoa - 1310; Fungi - 641; Plants - 1197; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink).  protein_id AT2G36670.1p  transcript_id AT2G36670.1  protein_id AT2G36670.1p  transcript_id AT2G36670.1  
At2g36680	chr2:015370713	0.0	C/15370713-15370726,15370159-15370341,15369731-15369818,15369577-15369616,15369314-15369495	AT2G36680.3  CDS  gene_syn F13K3.8, F13K3_8, VPS37-2  go_component ESCRT I complex|GO:0000813|17090720|ISS  product unknown protein  note LOCATED IN: ESCRT I complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Modifier of rudimentary, Modr (InterPro:IPR009851); BEST Arabidopsis thaliana protein match is: VPS37-1 (TAIR:AT3G53120.1); Has 46 Blast hits to 46 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G36680.3p  transcript_id AT2G36680.3  protein_id AT2G36680.3p  transcript_id AT2G36680.3  
At2g36680	chr2:015370713	0.0	C/15370713-15370726,15370159-15370341,15369731-15369818,15369577-15369616,15369314-15369495	AT2G36680.4  CDS  gene_syn F13K3.8, F13K3_8, VPS37-2  go_component ESCRT I complex|GO:0000813|17090720|ISS  product unknown protein  note LOCATED IN: ESCRT I complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Modifier of rudimentary, Modr (InterPro:IPR009851); BEST Arabidopsis thaliana protein match is: VPS37-1 (TAIR:AT3G53120.1); Has 46 Blast hits to 46 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G36680.4p  transcript_id AT2G36680.4  protein_id AT2G36680.4p  transcript_id AT2G36680.4  
At2g36680	chr2:015370713	0.0	C/15370713-15370726,15370159-15370341,15369731-15369818,15369577-15369616,15369449-15369495,15369246-15369366,15368980-15369143	AT2G36680.1  CDS  gene_syn F13K3.8, F13K3_8, VPS37-2  go_component ESCRT I complex|GO:0000813|17090720|ISS  product unknown protein  note LOCATED IN: ESCRT I complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Modifier of rudimentary, Modr (InterPro:IPR009851); BEST Arabidopsis thaliana protein match is: VPS37-1 (TAIR:AT3G53120.1); Has 348 Blast hits to 348 proteins in 85 species: Archae - 1; Bacteria - 4; Metazoa - 236; Fungi - 19; Plants - 37; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT2G36680.1p  transcript_id AT2G36680.1  protein_id AT2G36680.1p  transcript_id AT2G36680.1  
At2g36680	chr2:015370713	0.0	C/15370713-15370726,15370159-15370341,15369731-15369818,15369577-15369616,15369449-15369495,15369314-15369361	AT2G36680.2  CDS  gene_syn F13K3.8, F13K3_8, VPS37-2  go_component ESCRT I complex|GO:0000813|17090720|ISS  product unknown protein  note LOCATED IN: ESCRT I complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Modifier of rudimentary, Modr (InterPro:IPR009851); BEST Arabidopsis thaliana protein match is: VPS37-1 (TAIR:AT3G53120.1); Has 39 Blast hits to 39 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G36680.2p  transcript_id AT2G36680.2  protein_id AT2G36680.2p  transcript_id AT2G36680.2  
At2g36690	chr2:015379930	0.0	W/15379930-15380205,15380284-15380531,15381142-15381466,15381736-15381987	AT2G36690.1  CDS  gene_syn F13K3.9, F13K3_9  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biosynthetic process|GO:0009058||ISS  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (TAIR:AT3G60290.1); Has 5817 Blast hits to 5783 proteins in 683 species: Archae - 0; Bacteria - 707; Metazoa - 125; Fungi - 635; Plants - 3099; Viruses - 0; Other Eukaryotes - 1251 (source: NCBI BLink).  protein_id AT2G36690.1p  transcript_id AT2G36690.1  protein_id AT2G36690.1p  transcript_id AT2G36690.1  
At2g36695	chr2:015382702	0.0	W/15382702-15382768,15383012-15383298	AT2G36695.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 39 Blast hits to 29 proteins in 18 species: Archae - 0; Bacteria - 6; Metazoa - 12; Fungi - 10; Plants - 2; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G36695.1p  transcript_id AT2G36695.1  protein_id AT2G36695.1p  transcript_id AT2G36695.1  
At2g36700	chr2:015386183	0.0	C/15386183-15386421,15385937-15386108,15385252-15385458,15384921-15385162,15384706-15384847	AT2G36700.1  CDS  gene_syn F13K3.10, F13K3_10  go_component cell wall|GO:0005618||IEA  go_process cell wall modification|GO:0042545||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT2G36710.1); Has 1220 Blast hits to 1192 proteins in 175 species: Archae - 0; Bacteria - 255; Metazoa - 1; Fungi - 130; Plants - 834; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G36700.1p  transcript_id AT2G36700.1  protein_id AT2G36700.1p  transcript_id AT2G36700.1  
At2g36710	chr2:015390815	0.0	C/15390815-15391200,15390521-15390692,15390220-15390426,15389899-15390149,15389614-15389821	AT2G36710.1  CDS  gene_syn F13K3.11, F13K3_11  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT2G36700.1); Has 5390 Blast hits to 2963 proteins in 381 species: Archae - 5; Bacteria - 487; Metazoa - 2116; Fungi - 461; Plants - 1029; Viruses - 16; Other Eukaryotes - 1276 (source: NCBI BLink).  protein_id AT2G36710.1p  transcript_id AT2G36710.1  protein_id AT2G36710.1p  transcript_id AT2G36710.1  
At2g36720	chr2:015393447	0.0	W/15393447-15394301,15394386-15394463,15394572-15394776,15394863-15395022,15395175-15395249,15395452-15395544,15395648-15395737,15395830-15395911,15396002-15396061,15396133-15396185,15396266-15396432,15396754-15396964,15397287-15397344,15397428-15397484,15397602-15397847,15398303-15398367,15398454-15398510,15398590-15398683,15398777-15398917,15399013-15399189	AT2G36720.1  CDS  gene_syn F13K3.12, F13K3_12  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product PHD finger transcription factor, putative  note PHD finger transcription factor, putative; FUNCTIONS IN: protein binding, DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT2G27980.1); Has 3291 Blast hits to 2704 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 2475; Fungi - 268; Plants - 355; Viruses - 0; Other Eukaryotes - 193 (source: NCBI BLink).  protein_id AT2G36720.1p  transcript_id AT2G36720.1  protein_id AT2G36720.1p  transcript_id AT2G36720.1  
At2g36724	chr2:015401437	0.0	W/15401437-15401676	AT2G36724.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G26865.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G36724.1p  transcript_id AT2G36724.1  protein_id AT2G36724.1p  transcript_id AT2G36724.1  
At2g36730	chr2:015405068	0.0	C/15405068-15406573	AT2G36730.1  CDS  gene_syn F13K3.13, F13K3_13  go_component cellular_component|GO:0005575||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21065.1); Has 11745 Blast hits to 4567 proteins in 111 species: Archae - 0; Bacteria - 4; Metazoa - 59; Fungi - 21; Plants - 11453; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink).  protein_id AT2G36730.1p  transcript_id AT2G36730.1  protein_id AT2G36730.1p  transcript_id AT2G36730.1  
At2g36740	chr2:015409363	0.0	C/15409363-15409430,15409155-15409224,15408906-15408977,15408760-15408803,15408402-15408675,15408225-15408300,15408032-15408151,15407870-15407938,15407728-15407770,15407447-15407512,15407066-15407261	AT2G36740.1  CDS  gene_syn ATSWC2, F13K3.14, F13K3_14, SWC2  gene SWC2  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||IEA  go_function transcription factor activity|GO:0003700||IEA  go_function DNA binding|GO:0003677||ISS  product SWC2; DNA binding / transcription factor  note SWC2; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: YL1 nuclear, C-terminal (InterPro:IPR013272), YL1 nuclear (InterPro:IPR008895); Has 5106 Blast hits to 3123 proteins in 279 species: Archae - 2; Bacteria - 177; Metazoa - 1945; Fungi - 511; Plants - 118; Viruses - 104; Other Eukaryotes - 2249 (source: NCBI BLink).  protein_id AT2G36740.1p  transcript_id AT2G36740.1  protein_id AT2G36740.1p  transcript_id AT2G36740.1  
At2g36750	chr2:015410531	0.0	C/15410531-15412006	AT2G36750.1  CDS  gene_syn F13K3.15, F13K3_15, UDP-GLUCOSYL TRANSFERASE 73C1, UGT73C1  gene UGT73C1  go_process response to UV-B|GO:0010224|18266923|IEP  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function UDP-glucosyltransferase activity|GO:0035251|18702669|IDA  go_function trans-zeatin O-beta-D-glucosyltransferase activity|GO:0050403|15342621|IDA  go_function cis-zeatin O-beta-D-glucosyltransferase activity|GO:0050502|15342621|IDA  product UGT73C1 (UDP-GLUCOSYL TRANSFERASE 73C1); UDP-glucosyltransferase/ UDP-glycosyltransferase/ cis-zeatin O-beta-D-glucosyltransferase/ trans-zeatin O-beta-D-glucosyltransferase/ transferase, transferring glycosyl groups  note UDP-GLUCOSYL TRANSFERASE 73C1 (UGT73C1); FUNCTIONS IN: cis-zeatin O-beta-D-glucosyltransferase activity, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups, trans-zeatin O-beta-D-glucosyltransferase activity; INVOLVED IN: response to UV-B; EXPRESSED IN: stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: DOGT1 (DON-GLUCOSYLTRANSFERASE 1); UDP-glycosyltransferase/ cis-zeatin O-beta-D-glucosyltransferase/ glucosyltransferase/ quercetin 4 -O-glucosyltransferase/ quercetin 7-O-glucosyltransferase/ trans-zeatin O-beta-D-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT2G36800.1); Has 4796 Blast hits to 4752 proteins in 292 species: Archae - 0; Bacteria - 54; Metazoa - 1902; Fungi - 13; Plants - 2723; Viruses - 76; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT2G36750.1p  transcript_id AT2G36750.1  protein_id AT2G36750.1p  transcript_id AT2G36750.1  
At2g36760	chr2:015413042	0.0	C/15413042-15414532	AT2G36760.1  CDS  gene_syn F13K3.16, F13K3_16, UDP-glucosyl transferase 73C2, UGT73C2  gene UGT73C2  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product UGT73C2 (UDP-glucosyl transferase 73C2); UDP-glycosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note UDP-glucosyl transferase 73C2 (UGT73C2); FUNCTIONS IN: transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: flower, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT2G36780.1); Has 4969 Blast hits to 4909 proteins in 310 species: Archae - 0; Bacteria - 87; Metazoa - 2012; Fungi - 17; Plants - 2733; Viruses - 92; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT2G36760.1p  transcript_id AT2G36760.1  protein_id AT2G36760.1p  transcript_id AT2G36760.1  
At2g36770	chr2:015415227	0.0	C/15415227-15416717	AT2G36770.1  CDS  gene_syn F13K3.17, F13K3_17  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT2G36780.1); Has 4947 Blast hits to 4898 proteins in 307 species: Archae - 0; Bacteria - 69; Metazoa - 1996; Fungi - 15; Plants - 2733; Viruses - 103; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT2G36770.1p  transcript_id AT2G36770.1  protein_id AT2G36770.1p  transcript_id AT2G36770.1  
At2g36780	chr2:015417618	0.0	C/15417618-15419108	AT2G36780.1  CDS  gene_syn F13K3.18, F13K3_18  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT2G36770.1); Has 5041 Blast hits to 4989 proteins in 321 species: Archae - 0; Bacteria - 98; Metazoa - 2069; Fungi - 17; Plants - 2726; Viruses - 100; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT2G36780.1p  transcript_id AT2G36780.1  protein_id AT2G36780.1p  transcript_id AT2G36780.1  
At2g36790	chr2:015420339	0.0	C/15420339-15421826	AT2G36790.1  CDS  gene_syn F13K3.19, F13K3_19, UDP-glucosyl transferase 73C6, UGT73C6  gene UGT73C6  function The At2g36790 gene encodes a UDP-glucose:flavonol-3-O-glycoside-7-O-glucosyltransferase (UGT73C6)attaching a glucosyl residue to the 7-O-position of the flavonols kaempferol, quercetin and their 3-O-glycoside derivatives.  go_component cellular_component|GO:0005575||ND  go_process flavonol biosynthetic process|GO:0051555|12900416|IDA  go_process flavonol biosynthetic process|GO:0051555|12900416|IMP  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function UDP-glucosyltransferase activity|GO:0035251|12900416|IDA  go_function quercetin 3-O-glucosyltransferase activity|GO:0080043|15352060|IDA  go_function quercetin 7-O-glucosyltransferase activity|GO:0080044|15352060|IDA  go_function quercetin 4 -O-glucosyltransferase activity|GO:0080046|15352060|IDA  product UGT73C6 (UDP-glucosyl transferase 73C6); UDP-glucosyltransferase/ UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ quercetin 4 -O-glucosyltransferase/ quercetin 7-O-glucosyltransferase/ transferase, transferring glycosyl groups  note UDP-glucosyl transferase 73C6 (UGT73C6); FUNCTIONS IN: in 6 functions; INVOLVED IN: flavonol biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, leaf; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: DOGT1 (DON-GLUCOSYLTRANSFERASE 1); UDP-glycosyltransferase/ cis-zeatin O-beta-D-glucosyltransferase/ glucosyltransferase/ quercetin 4 -O-glucosyltransferase/ quercetin 7-O-glucosyltransferase/ trans-zeatin O-beta-D-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT2G36800.1); Has 4823 Blast hits to 4778 proteins in 289 species: Archae - 0; Bacteria - 53; Metazoa - 1938; Fungi - 10; Plants - 2725; Viruses - 70; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT2G36790.1p  transcript_id AT2G36790.1  protein_id AT2G36790.1p  transcript_id AT2G36790.1  
At2g36792	chr2:015420355	0.0	W/15420355-15421943	AT2G36792.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G36790  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G36792.1  
At2g36792	chr2:015420881	0.0	W/15420881-15421964	AT2G36792.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G36790  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G36792.2  
At2g36800	chr2:015423493	0.0	C/15423493-15424980	AT2G36800.1  CDS  gene_syn DOGT1, DON-GLUCOSYLTRANSFERASE 1, F13K3.20, F13K3_20, UDP-GLUCOSYL TRANSFERASE 73C5, UGT73C5  gene DOGT1  function Encodes a DON-Glucosyltransferase. The UGT73C5 glucosylates both brassinolide and castasterone in the 23-O position. The enzyme is presumably involved in the homeostasis of those steroid hormones hence regulating BR activity. Transgenic plants overexpressing UGT73C5 show a typical BR-deficient phenotype.  go_process brassinosteroid metabolic process|GO:0016131|16214889|IDA  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function glucosyltransferase activity|GO:0046527|16214889|IDA  go_function trans-zeatin O-beta-D-glucosyltransferase activity|GO:0050403|15342621|IDA  go_function cis-zeatin O-beta-D-glucosyltransferase activity|GO:0050502|15342621|IDA  go_function quercetin 7-O-glucosyltransferase activity|GO:0080044|15352060|IDA  go_function quercetin 4 -O-glucosyltransferase activity|GO:0080046|15352060|IDA  product DOGT1 (DON-GLUCOSYLTRANSFERASE 1); UDP-glycosyltransferase/ cis-zeatin O-beta-D-glucosyltransferase/ glucosyltransferase/ quercetin 4 -O-glucosyltransferase/ quercetin 7-O-glucosyltransferase/ trans-zeatin O-beta-D-glucosyltransferase/ transferase, transferring glycosyl groups  note DON-GLUCOSYLTRANSFERASE 1 (DOGT1); FUNCTIONS IN: in 7 functions; INVOLVED IN: brassinosteroid metabolic process; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT73C6 (UDP-glucosyl transferase 73C6); UDP-glucosyltransferase/ UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ quercetin 4 -O-glucosyltransferase/ quercetin 7-O-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT2G36790.1); Has 4781 Blast hits to 4725 proteins in 284 species: Archae - 0; Bacteria - 44; Metazoa - 1895; Fungi - 14; Plants - 2737; Viruses - 63; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT2G36800.1p  transcript_id AT2G36800.1  protein_id AT2G36800.1p  transcript_id AT2G36800.1  
At2g36810	chr2:015439423	0.0	C/15439423-15439462,15439159-15439249,15438993-15439047,15438782-15438913,15438496-15438567,15437985-15438075,15437776-15437871,15437416-15437494,15437270-15437333,15436811-15436914,15436475-15436580,15436248-15436337,15436074-15436151,15435817-15435884,15435630-15435729,15435444-15435551,15434848-15434937,15434694-15434798,15434519-15434614,15434352-15434426,15434128-15434187,15433919-15434008,15433679-15433800,15433077-15433206,15432918-15432997,15432389-15432524,15432013-15432094,15431701-15431846,15431532-15431612,15431325-15431425,15430662-15430900,15430462-15430571,15430222-15430347,15430056-15430130,15429841-15429974,15429671-15429743,15429421-15429552,15429052-15429233,15428853-15428975,15428700-15428760,15428528-15428623,15428128-15428228,15427699-15427804,15427168-15427281,15426987-15427061,15426693-15426791,15426527-15426598,15426361-15426446,15426188-15426278,15425990-15426097,15425739-15425918	AT2G36810.1  CDS  gene_syn F13K3.21, F13K3_21  go_component chloroplast|GO:0009507||IEA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); Has 201 Blast hits to 170 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 147; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT2G36810.1p  transcript_id AT2G36810.1  protein_id AT2G36810.1p  transcript_id AT2G36810.1  
At2g36815	chr2:015440769	0.0	W/15440769-15440836,15441021-15441276	AT2G36815.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cactin, central region (InterPro:IPR018816); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03910.1).  protein_id AT2G36815.1p  transcript_id AT2G36815.1  protein_id AT2G36815.1p  transcript_id AT2G36815.1  
At2g36815	chr2:015440841	0.0	W/15440841-15440896,15441027-15441276	AT2G36815.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cactin, central region (InterPro:IPR018816); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03910.1).  protein_id AT2G36815.2p  transcript_id AT2G36815.2  protein_id AT2G36815.2p  transcript_id AT2G36815.2  
At2g36830	chr2:015445490	0.0	W/15445490-15445873,15445965-15446336	AT2G36830.1  CDS  gene_syn GAMMA TONOPLAST INTRINSIC PROTEIN, GAMMA TONOPLAST INTRINSIC PROTEIN 1, GAMMA-TIP, GAMMA-TIP1, GAMMA-TONOPLAST INTRINSIC PROTEIN, T1J8.1, T1J8_1, TIP1;1, TONOPLAST INTRINSIC PROTEIN 1;1  gene GAMMA-TIP  function encodes a tonoplast intrinsic protein, which functions as water channel. highly expressed in root, stem, cauline leaves and flowers. Complete knock out mutants have no detectable phenotype from the wild type.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component plant-type vacuole membrane|GO:0009705|11844103|IDA  go_component plant-type vacuole membrane|GO:0009705|19229639|IDA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_process response to salt stress|GO:0009651|16183846|IEP  go_process gibberellic acid mediated signaling|GO:0009740||TAS  go_function water channel activity|GO:0015250||ISS  product GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN); water channel  note GAMMA TONOPLAST INTRINSIC PROTEIN (GAMMA-TIP); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, response to salt stress, gibberellic acid mediated signaling; LOCATED IN: plant-type vacuole membrane, plasma membrane, vacuole, membrane, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: TIP2 (TONOPLAST INTRINSIC PROTEIN 2); water channel (TAIR:AT3G26520.1); Has 6947 Blast hits to 6934 proteins in 1273 species: Archae - 57; Bacteria - 2683; Metazoa - 1304; Fungi - 286; Plants - 1449; Viruses - 0; Other Eukaryotes - 1168 (source: NCBI BLink).  protein_id AT2G36830.1p  transcript_id AT2G36830.1  protein_id AT2G36830.1p  transcript_id AT2G36830.1  
At2g36835	chr2:015451164	0.0	C/15451164-15451307,15450971-15451081,15450518-15450586,15449839-15449889	AT2G36835.1  CDS  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G36835.1p  transcript_id AT2G36835.1  protein_id AT2G36835.1p  transcript_id AT2G36835.1  
At2g36840	chr2:015453397	0.0	C/15453397-15453550,15453058-15453285,15452875-15452980,15452471-15452792,15452070-15452354,15451834-15451971	AT2G36840.1  CDS  gene_syn T1J8.2, T1J8_2  go_process metabolic process|GO:0008152||IEA  go_function amino acid binding|GO:0016597||IEA  go_component cellular_component|GO:0005575||ND  product ACT domain-containing protein  note ACT domain-containing protein; FUNCTIONS IN: amino acid binding; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: ACT domain-containing protein (TAIR:AT2G39570.1); Has 500 Blast hits to 416 proteins in 91 species: Archae - 0; Bacteria - 173; Metazoa - 0; Fungi - 4; Plants - 234; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT2G36840.1p  transcript_id AT2G36840.1  protein_id AT2G36840.1p  transcript_id AT2G36840.1  
At2g36850	chr2:015469459	0.0	C/15469459-15469666,15469290-15469387,15468886-15469052,15468452-15468563,15468102-15468212,15467874-15467999,15467693-15467782,15467468-15467565,15467271-15467388,15466727-15466861,15466192-15466268,15466032-15466110,15465554-15465646,15465369-15465471,15465136-15465259,15464860-15465046,15464737-15464789,15464329-15464389,15463982-15464063,15463669-15463718,15463455-15463541,15463256-15463341,15463012-15463114,15462458-15462555,15462286-15462367,15462026-15462186,15461772-15461892,15460966-15461063,15460783-15460873,15460532-15460692,15460340-15460449,15460113-15460247,15459900-15459968,15459644-15459809,15459122-15459245,15458838-15458957,15458441-15458556,15458254-15458337,15457910-15458022,15457690-15457742,15457423-15457599,15457299-15457346,15456688-15456846,15456481-15456594,15456298-15456386,15456051-15456209,15455818-15455920,15455618-15455737,15455449-15455499,15454935-15455294	AT2G36850.1  CDS  gene_syn ATGSL08, ATGSL8, GLUCAN SYNTHASE-LIKE 8, GSL08, GSL8, T1J8.3, T1J8_3  gene GSL8  function Encodes GSL8, a member of the Glucan Synthase-Like (GSL) family believed to be involved in the synthesis of the cell wall component callose. GSL8 is required for male gametophyte development and plant growth. Has a role in entry of microspores into mitosis. Also refer to GSL10 (At3g07160).  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function 1,3-beta-glucan synthase activity|GO:0003843||ISS  go_component 1,3-beta-glucan synthase complex|GO:0000148||ISS  go_process 1,3-beta-glucan biosynthetic process|GO:0006075||ISS  go_process pollen development|GO:0009555|18315544|IMP  go_process microsporogenesis|GO:0009556|18315544|IMP  go_process developmental growth|GO:0048589|18315544|IMP  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product GSL8 (GLUCAN SYNTHASE-LIKE 8); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups  note GLUCAN SYNTHASE-LIKE 8 (GSL8); FUNCTIONS IN: transferase activity, transferring glycosyl groups, 1,3-beta-glucan synthase activity; INVOLVED IN: microsporogenesis, developmental growth, pollen development, 1,3-beta-glucan biosynthetic process; LOCATED IN: 1,3-beta-glucan synthase complex, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Glycosyl transferase, family 48 (InterPro:IPR003440); BEST Arabidopsis thaliana protein match is: ATGSL10 (glucan synthase-like 10); 1,3-beta-glucan synthase (TAIR:AT3G07160.1); Has 720 Blast hits to 569 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 374; Plants - 326; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT2G36850.1p  transcript_id AT2G36850.1  protein_id AT2G36850.1p  transcript_id AT2G36850.1  
At2g36854	chr2:015469719	0.0	W/15469719-15469904	AT2G36854.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G36854.1p  transcript_id AT2G36854.1  protein_id AT2G36854.1p  transcript_id AT2G36854.1  
At2g36860	chr2:015470209	0.0	C/15470209-15470245	AT2G36860.1  tRNA  gene_syn 51066.TRNA-TYR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT2G36860.1  
At2g36870	chr2:015474417	0.0	C/15474417-15474630,15474215-15474315,15473915-15474132,15472869-15473235	AT2G36870.1  CDS  gene_syn T1J8.5, T1J8_5  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process cellular glucan metabolic process|GO:0006073||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762||IEA  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative  note xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: XTR8 (XYLOGLUCAN ENDO-TRANSGLYCOSYLASE-RELATED 8); hydrolase, acting on glycosyl bonds / xyloglucan:xyloglucosyl transferase (TAIR:AT3G44990.1); Has 1134 Blast hits to 1132 proteins in 179 species: Archae - 2; Bacteria - 128; Metazoa - 0; Fungi - 156; Plants - 794; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT2G36870.1p  transcript_id AT2G36870.1  protein_id AT2G36870.1p  transcript_id AT2G36870.1  
At2g36880	chr2:015479721	0.0	C/15479721-15480893	AT2G36880.1  CDS  gene_syn MAT3, T1J8.6, T1J8_6, methionine adenosyltransferase 3  gene MAT3  go_component plasma membrane|GO:0005886|17317660|IDA  go_process one-carbon compound metabolic process|GO:0006730||IEA  go_function copper ion binding|GO:0005507|16526091|IDA  go_process S-adenosylmethionine biosynthetic process|GO:0006556||ISS  go_function methionine adenosyltransferase activity|GO:0004478||ISS  product MAT3 (methionine adenosyltransferase 3); copper ion binding / methionine adenosyltransferase  note methionine adenosyltransferase 3 (MAT3); FUNCTIONS IN: copper ion binding, methionine adenosyltransferase activity; INVOLVED IN: one-carbon compound metabolic process, S-adenosylmethionine biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine synthetase (InterPro:IPR002133); BEST Arabidopsis thaliana protein match is: MTO3 (METHIONINE OVER-ACCUMULATOR 3); methionine adenosyltransferase (TAIR:AT3G17390.1); Has 8009 Blast hits to 8008 proteins in 1637 species: Archae - 6; Bacteria - 2990; Metazoa - 309; Fungi - 109; Plants - 502; Viruses - 0; Other Eukaryotes - 4093 (source: NCBI BLink).  protein_id AT2G36880.1p  transcript_id AT2G36880.1  protein_id AT2G36880.1p  transcript_id AT2G36880.1  
At2g36880	chr2:015479721	0.0	C/15479721-15480893	AT2G36880.2  CDS  gene_syn MAT3, T1J8.6, T1J8_6, methionine adenosyltransferase 3  gene MAT3  go_component plasma membrane|GO:0005886|17317660|IDA  go_process one-carbon compound metabolic process|GO:0006730||IEA  go_process S-adenosylmethionine biosynthetic process|GO:0006556||ISS  go_function methionine adenosyltransferase activity|GO:0004478||ISS  product MAT3 (methionine adenosyltransferase 3); methionine adenosyltransferase  note methionine adenosyltransferase 3 (MAT3); FUNCTIONS IN: methionine adenosyltransferase activity; INVOLVED IN: one-carbon compound metabolic process, S-adenosylmethionine biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine synthetase (InterPro:IPR002133); BEST Arabidopsis thaliana protein match is: MTO3 (METHIONINE OVER-ACCUMULATOR 3); methionine adenosyltransferase (TAIR:AT3G17390.1); Has 8009 Blast hits to 8008 proteins in 1637 species: Archae - 6; Bacteria - 2990; Metazoa - 309; Fungi - 109; Plants - 502; Viruses - 0; Other Eukaryotes - 4093 (source: NCBI BLink).  protein_id AT2G36880.2p  transcript_id AT2G36880.2  protein_id AT2G36880.2p  transcript_id AT2G36880.2  
At2g36881	chr2:015481542	0.0	C/15481542-15481703	AT2G36881.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G36881.1p  transcript_id AT2G36881.1  protein_id AT2G36881.1p  transcript_id AT2G36881.1  
At2g36885	chr2:015483379	0.0	C/15483379-15483676,15483046-15483143,15482786-15482857,15482571-15482695,15482349-15482426,15482256-15482268	AT2G36885.2  CDS  go_component chloroplast|GO:0009507||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 70 Blast hits to 70 proteins in 29 species: Archae - 0; Bacteria - 51; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G36885.2p  transcript_id AT2G36885.2  protein_id AT2G36885.2p  transcript_id AT2G36885.2  
At2g36885	chr2:015483379	0.0	C/15483379-15483676,15483046-15483143,15482786-15482857,15482571-15482695,15482354-15482426,15482167-15482271	AT2G36885.1  CDS  go_component chloroplast|GO:0009507||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 134 Blast hits to 134 proteins in 42 species: Archae - 0; Bacteria - 96; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT2G36885.1p  transcript_id AT2G36885.1  protein_id AT2G36885.1p  transcript_id AT2G36885.1  
At2g36890	chr2:015485821	0.0	W/15485821-15485956,15486072-15486201,15486615-15487245	AT2G36890.1  CDS  gene_syn ATMYB38, BIT1, BLUE INSENSITIVE TRAIT 1, MYB DOMAIN PROTEIN 38, MYB38, RAX2, REGULATOR OF AXILLARY MERISTEMS 2, T1J8.7, T1J8_7  gene RAX2  function Putative homolog of the Blind gene in tomato. Together with RAX1 and RAX3 belong to the class R2R3 MYB genes; encoded by the Myb-like transcription factor MYB38, regulates axillary meristem formation.   go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process blue light signaling pathway|GO:0009785|18397371|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product RAX2 (REGULATOR OF AXILLARY MERISTEMS 2); DNA binding / transcription factor  note REGULATOR OF AXILLARY MERISTEMS 2 (RAX2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 6 processes; EXPRESSED IN: leaf whorl, sepal, flower, root; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB37 (MYB DOMAIN PROTEIN 37); DNA binding / transcription factor (TAIR:AT5G23000.1); Has 6243 Blast hits to 5806 proteins in 338 species: Archae - 0; Bacteria - 0; Metazoa - 609; Fungi - 288; Plants - 3846; Viruses - 4; Other Eukaryotes - 1496 (source: NCBI BLink).  protein_id AT2G36890.1p  transcript_id AT2G36890.1  protein_id AT2G36890.1p  transcript_id AT2G36890.1  
At2g36895	chr2:015490089	0.0	C/15490089-15490296,15489806-15489906,15489614-15489727,15489431-15489532,15489176-15489346	AT2G36895.2  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 14 Blast hits to 14 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G36895.2p  transcript_id AT2G36895.2  protein_id AT2G36895.2p  transcript_id AT2G36895.2  
At2g36895	chr2:015490089	0.0	C/15490089-15490296,15489806-15489906,15489614-15489730,15489431-15489532,15489176-15489346	AT2G36895.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 14 Blast hits to 14 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G36895.1p  transcript_id AT2G36895.1  protein_id AT2G36895.1p  transcript_id AT2G36895.1  
At2g36900	chr2:015492343	0.0	C/15492343-15492587,15491846-15492116,15491615-15491776	AT2G36900.1  CDS  gene_syn ATMEMB11, MEMB11, MEMBRIN 11, T1J8.8, T1J8_8  gene MEMB11  function member of Membrin Gene Family  go_component membrane|GO:0016020||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_component Golgi membrane|GO:0000139||ISS  go_component endoplasmic reticulum membrane|GO:0005789||ISS  go_process membrane fusion|GO:0006944||ISS  go_process vesicle-mediated transport|GO:0016192||ISS  go_function SNAP receptor activity|GO:0005484||ISS  product MEMB11 (MEMBRIN 11); SNAP receptor  note MEMBRIN 11 (MEMB11); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion, intracellular protein transport, vesicle-mediated transport; LOCATED IN: endoplasmic reticulum membrane, Golgi membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vesicle transport v-SNARE (InterPro:IPR007705); BEST Arabidopsis thaliana protein match is: MEMB12 (MEMBRIN 12); SNAP receptor (TAIR:AT5G50440.1); Has 355 Blast hits to 355 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 177; Fungi - 63; Plants - 73; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT2G36900.1p  transcript_id AT2G36900.1  protein_id AT2G36900.1p  transcript_id AT2G36900.1  
At2g36900	chr2:015492343	0.0	C/15492343-15492587,15491846-15492116,15491668-15491776,15491049-15491101	AT2G36900.2  CDS  gene_syn ATMEMB11, MEMB11, MEMBRIN 11, T1J8.8, T1J8_8  gene MEMB11  function member of Membrin Gene Family  go_component membrane|GO:0016020||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_component Golgi membrane|GO:0000139||ISS  go_component endoplasmic reticulum membrane|GO:0005789||ISS  go_process membrane fusion|GO:0006944||ISS  go_process vesicle-mediated transport|GO:0016192||ISS  go_function SNAP receptor activity|GO:0005484||ISS  product MEMB11 (MEMBRIN 11); SNAP receptor  note MEMBRIN 11 (MEMB11); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: intracellular protein transport, membrane fusion, vesicle-mediated transport; LOCATED IN: endoplasmic reticulum membrane, membrane, Golgi membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vesicle transport v-SNARE (InterPro:IPR007705); BEST Arabidopsis thaliana protein match is: MEMB12 (MEMBRIN 12); SNAP receptor (TAIR:AT5G50440.1).  protein_id AT2G36900.2p  transcript_id AT2G36900.2  protein_id AT2G36900.2p  transcript_id AT2G36900.2  
At2g36910	chr2:015502162	0.0	W/15502162-15502425,15502495-15502549,15502635-15502810,15502884-15503084,15503212-15503471,15503571-15503887,15503975-15504198,15504527-15504900,15504984-15505701,15505779-15507050	AT2G36910.1  CDS  gene_syn ABCB1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP BINDING CASSETTE SUBFAMILY B1, ATPGP1, P-GLYCOPROTEIN 1, PGP1, T1J8.9, T1J8_9  gene ABCB1  function Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR1.Possibly regulates auxin-dependent responses by influencing basipetal auxin transport in the root. Exerts nonredundant, partially overlapping functions with the ABC transporter encoded by AT3G28860. PGP1 mediates cellular efflux of IAA and interacts with PIN genes that may confer an accelerated vectoral component to PGP-mediated transport. The non-polar localization of PGP1 at root and shoot apices, where IAA gradient-driven transport is impaired, may be required to confer directionality to auxin transport in those tissues.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component plasma membrane|GO:0005886|9761790|IDA  go_process regulation of cell size|GO:0008361|15908594|IMP  go_process response to nematode|GO:0009624|16478044|IEP  go_process response to blue light|GO:0009637|15908594|IMP  go_process response to red or far red light|GO:0009639|15908594|IMP  go_process photomorphogenesis|GO:0009640|15908594|IMP  go_process response to auxin stimulus|GO:0009733|15908594|IMP  go_process auxin polar transport|GO:0009926|16212599|IMP  go_process auxin polar transport|GO:0009926|16359667|TAS  go_process positive gravitropism|GO:0009958|15908594|IGI  go_process anthocyanin accumulation in tissues in response to UV light|GO:0043481|15908594|IMP  go_process stamen development|GO:0048443|18628351|IGI  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function auxin efflux transmembrane transporter activity|GO:0010329|16212599|IDA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|11346655|ISS  product ABCB1 (ATP BINDING CASSETTE SUBFAMILY B1); ATPase, coupled to transmembrane movement of substances / auxin efflux transmembrane transporter/ calmodulin binding  note ATP BINDING CASSETTE SUBFAMILY B1 (ABCB1); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, calmodulin binding, auxin efflux transmembrane transporter activity; INVOLVED IN: in 10 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABCB19; ATPase, coupled to transmembrane movement of substances / auxin efflux transmembrane transporter (TAIR:AT3G28860.1); Has 492853 Blast hits to 232858 proteins in 2663 species: Archae - 8727; Bacteria - 331403; Metazoa - 15271; Fungi - 7893; Plants - 4325; Viruses - 35; Other Eukaryotes - 125199 (source: NCBI BLink).  protein_id AT2G36910.1p  transcript_id AT2G36910.1  protein_id AT2G36910.1p  transcript_id AT2G36910.1  
At2g36916	chr2:015508283	0.0	W/15508283-15508381	AT2G36916.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G36916.1p  transcript_id AT2G36916.1  protein_id AT2G36916.1p  transcript_id AT2G36916.1  
At2g36920	chr2:015508838	0.0	W/15508838-15509488	AT2G36920.1  CDS  gene_syn T1J8.10, T1J8_10  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02870.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G36920.1p  transcript_id AT2G36920.1  protein_id AT2G36920.1p  transcript_id AT2G36920.1  
At2g36930	chr2:015511157	0.0	C/15511157-15511347,15510967-15511029,15510543-15510719,15510368-15510430,15510002-15510104	AT2G36930.1  CDS  gene_syn T1J8.11, T1J8_11  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, U1-type (InterPro:IPR003604), Zinc finger, C2H2-type (InterPro:IPR007087); Has 506 Blast hits to 289 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 257; Fungi - 153; Plants - 39; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT2G36930.1p  transcript_id AT2G36930.1  protein_id AT2G36930.1p  transcript_id AT2G36930.1  
At2g36940	chr2:015511786	0.0	C/15511786-15511878	AT2G36940.1  CDS  gene_syn T1J8.12, T1J8_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf lamina base, sperm cell, leaf whorl, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.02 two leaves visible, LP.12 twelve leaves visible; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G36940.1p  transcript_id AT2G36940.1  protein_id AT2G36940.1p  transcript_id AT2G36940.1  
At2g36950	chr2:015515216	0.0	W/15515216-15515674,15515924-15516002,15516132-15516754	AT2G36950.1  CDS  gene_syn T1J8.13, T1J8_13  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT5G03380.1); Has 1894 Blast hits to 1345 proteins in 210 species: Archae - 0; Bacteria - 199; Metazoa - 308; Fungi - 38; Plants - 1023; Viruses - 4; Other Eukaryotes - 322 (source: NCBI BLink).  protein_id AT2G36950.1p  transcript_id AT2G36950.1  protein_id AT2G36950.1p  transcript_id AT2G36950.1  
At2g36960	chr2:015523552	0.0	W/15523552-15523693,15523781-15523863,15523941-15523988,15524088-15524197,15524643-15524727,15524827-15525106,15525315-15525422,15525523-15525677,15525770-15526008,15526105-15526780,15526859-15526987,15527069-15527245	AT2G36960.1  CDS  gene_syn T1J8.14, T1J8_14, TKI1, TSL-kinase interacting protein 1  gene TKI1  function Arabidopsis thaliana myb/SANT domain protein  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product TKI1 (TSL-kinase interacting protein 1); DNA binding / transcription factor  note TSL-kinase interacting protein 1 (TKI1); FUNCTIONS IN: transcription factor activity, DNA binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), SANT, eukarya (InterPro:IPR017884); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G39380.1); Has 109 Blast hits to 105 proteins in 41 species: Archae - 0; Bacteria - 17; Metazoa - 34; Fungi - 2; Plants - 47; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G36960.1p  transcript_id AT2G36960.1  protein_id AT2G36960.1p  transcript_id AT2G36960.1  
At2g36960	chr2:015523552	0.0	W/15523552-15523693,15523781-15523863,15523941-15523988,15524088-15524197,15524643-15524727,15524827-15525106,15525315-15525422,15525529-15525677,15525770-15526008,15526105-15526780,15526859-15526987,15527069-15527245	AT2G36960.2  CDS  gene_syn T1J8.14, T1J8_14, TKI1, TSL-kinase interacting protein 1  gene TKI1  function Arabidopsis thaliana myb/SANT domain protein  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product TKI1 (TSL-kinase interacting protein 1); DNA binding / transcription factor  note TSL-kinase interacting protein 1 (TKI1); FUNCTIONS IN: transcription factor activity, DNA binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SANT, eukarya (InterPro:IPR017884); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G39380.1); Has 107 Blast hits to 103 proteins in 40 species: Archae - 0; Bacteria - 17; Metazoa - 34; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G36960.2p  transcript_id AT2G36960.2  protein_id AT2G36960.2p  transcript_id AT2G36960.2  
At2g36970	chr2:015529050	0.0	W/15529050-15529575,15529766-15530712	AT2G36970.1  CDS  gene_syn T1J8.15, T1J8_15  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: glycosyltransferase family protein (TAIR:AT2G28080.1); Has 3742 Blast hits to 3712 proteins in 239 species: Archae - 0; Bacteria - 25; Metazoa - 941; Fungi - 11; Plants - 2727; Viruses - 21; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT2G36970.1p  transcript_id AT2G36970.1  protein_id AT2G36970.1p  transcript_id AT2G36970.1  
At2g36980	chr2:015531161	0.0	W/15531161-15533038	AT2G36980.1  CDS  gene_syn T1J8.16, T1J8_16  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: embryo, flower; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 16294 Blast hits to 5023 proteins in 153 species: Archae - 4; Bacteria - 1; Metazoa - 114; Fungi - 96; Plants - 15789; Viruses - 0; Other Eukaryotes - 290 (source: NCBI BLink).  protein_id AT2G36980.1p  transcript_id AT2G36980.1  protein_id AT2G36980.1p  transcript_id AT2G36980.1  
At2g36985	chr2:015534943	0.0	C/15534943-15535104	AT2G36985.1  CDS  gene_syn DEVIL 16, DVL16, ROT4, ROTUNDIFOLIA4  gene ROT4  function Encodes ROTUNDIFOLIA4, a member of the seed plant-specific family of small peptides, RTFL (ROT FOUR LIKE), characterised by the presence of a 29-amino acid domain: RTF. Expressed in shoot apices, young leaves and flowers. Involved in controlling polarity-dependent cell proliferation.  go_component plasma membrane|GO:0005886|15125775|IDA  go_process regulation of cell proliferation|GO:0042127|15125775|IMP  go_process shoot development|GO:0048367|14871303|ISS  go_function molecular_function|GO:0003674||ND  product ROT4 (ROTUNDIFOLIA4)  note ROTUNDIFOLIA4 (ROT4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: shoot development, regulation of cell proliferation; LOCATED IN: plasma membrane; EXPRESSED IN: leaf primordium, flower; CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); BEST Arabidopsis thaliana protein match is: RTFL1 (ROTUNDIFOLIA LIKE 1) (TAIR:AT3G53232.1); Has 87 Blast hits to 87 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G36985.1p  transcript_id AT2G36985.1  protein_id AT2G36985.1p  transcript_id AT2G36985.1  
At2g36990	chr2:015539929	0.0	C/15539929-15540016,15539601-15539755,15539397-15539494,15539119-15539304,15538769-15539024,15538458-15538688,15538159-15538299,15537855-15538055,15537502-15537789	AT2G36990.1  CDS  gene_syn ATSIG6, RNA POLYMERASE SIGMA-SUBUNIT F, SIG6, SIGF, SIGMA FACTOR 6, SOLDAT8, T1J8.17, T1J8_17  gene SIGF  function Encodes a general sigma factor in chloroplasts and is probably responsible for the recognition of sigma 70 type standard bacteria-type multi-subunit RNA polymerase (PEP) promoters in young cotyledons.  go_component chloroplast|GO:0009507|10984613|IDA  go_process transcription initiation|GO:0006352|10984613|TAS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process positive regulation of transcription|GO:0045941|15807777|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  go_function sigma factor activity|GO:0016987|10984613|ISS  product SIGF (RNA POLYMERASE SIGMA-SUBUNIT F); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor  note RNA POLYMERASE SIGMA-SUBUNIT F (SIGF); FUNCTIONS IN: DNA-directed RNA polymerase activity, transcription factor activity, sigma factor activity, DNA binding; INVOLVED IN: positive regulation of transcription, regulation of transcription, DNA-dependent, transcription initiation; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor, region 2 (InterPro:IPR013325), Winged helix repressor DNA-binding (InterPro:IPR011991), RNA polymerase sigma-70 region 3 (InterPro:IPR007624), RNA polymerase sigma-70 (InterPro:IPR014284), RNA polymerase sigma factor, regions 3 and 4 (InterPro:IPR013324), RNA polymerase sigma factor, SigB/SigC/SigD, plastid (InterPro:IPR016262), RNA polymerase sigma-70 factor (InterPro:IPR000943), RNA polymerase sigma-70 region 2 (InterPro:IPR007627), RNA polymerase sigma-70 region 4 (InterPro:IPR007630); BEST Arabidopsis thaliana protein match is: SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor (TAIR:AT1G08540.1); Has 16392 Blast hits to 16379 proteins in 1578 species: Archae - 0; Bacteria - 9698; Metazoa - 0; Fungi - 2; Plants - 152; Viruses - 10; Other Eukaryotes - 6530 (source: NCBI BLink).  protein_id AT2G36990.1p  transcript_id AT2G36990.1  protein_id AT2G36990.1p  transcript_id AT2G36990.1  
At2g37000	chr2:015540390	0.0	W/15540390-15540956	AT2G37000.1  CDS  gene_syn T1J8.18, T1J8_18  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product TCP family transcription factor, putative  note TCP family transcription factor, putative; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: AtTCP14 (TEOSINTE BRANCHED1, CYCLOIDEA and PCF (TCP) 14); transcription factor (TAIR:AT3G47620.1); Has 185 Blast hits to 184 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 185; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G37000.1p  transcript_id AT2G37000.1  protein_id AT2G37000.1p  transcript_id AT2G37000.1  
At2g37010	chr2:015541720	0.0	W/15541720-15541949,15542029-15542105,15542183-15542458,15542565-15542628,15542709-15542809,15542962-15542996,15543098-15543160,15543237-15544090,15544222-15544518,15544604-15545068,15545150-15545298,15545401-15545690,15545782-15545915,15546003-15546159	AT2G37010.1  CDS  gene_syn ATNAP12, T1J8.19, T1J8_19  gene ATNAP12  function member of NAP subfamily  go_component endomembrane system|GO:0012505||IEA  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  product ATNAP12; transporter  note ATNAP12; FUNCTIONS IN: transporter activity; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATPase, coupled to transmembrane movement of substances (TAIR:AT5G60740.1); Has 212031 Blast hits to 196339 proteins in 2550 species: Archae - 4049; Bacteria - 148523; Metazoa - 7157; Fungi - 4073; Plants - 2626; Viruses - 15; Other Eukaryotes - 45588 (source: NCBI BLink).  protein_id AT2G37010.1p  transcript_id AT2G37010.1  protein_id AT2G37010.1p  transcript_id AT2G37010.1  
At2g37020	chr2:015546514	0.0	W/15546514-15546907,15547142-15547238,15547315-15547430,15548136-15548180,15548316-15548341,15548460-15548595,15548680-15548792	AT2G37020.1  CDS  gene_syn T1J8.20, T1J8_20  go_component chloroplast|GO:0009507|18431481|IDA  go_function sequence-specific DNA binding|GO:0043565||IEA  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product DNA binding / sequence-specific DNA binding  note DNA binding / sequence-specific DNA binding; FUNCTIONS IN: sequence-specific DNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translin, C-terminal (InterPro:IPR016069), Translin (InterPro:IPR002848), Translin, N-terminal (InterPro:IPR016068); Has 375 Blast hits to 375 proteins in 102 species: Archae - 2; Bacteria - 0; Metazoa - 222; Fungi - 108; Plants - 20; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT2G37020.1p  transcript_id AT2G37020.1  protein_id AT2G37020.1p  transcript_id AT2G37020.1  
At2g37025	chr2:015550042	0.0	W/15550042-15550110,15550207-15550393,15550489-15550541,15550625-15550715,15550797-15551079,15551169-15551259,15551339-15551569,15551650-15551706,15551787-15551957	AT2G37025.1  CDS  gene_syn TRF-LIKE 8, TRFL8  gene TRFL8  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||IEA  product TRFL8 (TRF-LIKE 8); DNA binding  note TRF-LIKE 8 (TRFL8); FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRFL6 (TRF-LIKE 6); DNA binding / transcription factor (TAIR:AT1G72650.2); Has 247 Blast hits to 243 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 20; Plants - 159; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT2G37025.1p  transcript_id AT2G37025.1  protein_id AT2G37025.1p  transcript_id AT2G37025.1  
At2g37025	chr2:015550042	0.0	W/15550042-15550110,15550207-15550393,15550489-15550541,15550625-15550715,15550797-15551079,15551169-15551259,15551339-15551569,15551650-15551706,15551787-15551957	AT2G37025.2  CDS  gene_syn TRF-LIKE 8, TRFL8  gene TRFL8  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||IEA  product TRFL8 (TRF-LIKE 8); DNA binding  note TRF-LIKE 8 (TRFL8); FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRFL6 (TRF-LIKE 6); DNA binding / transcription factor (TAIR:AT1G72650.2); Has 247 Blast hits to 243 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 20; Plants - 159; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT2G37025.2p  transcript_id AT2G37025.2  protein_id AT2G37025.2p  transcript_id AT2G37025.2  
At2g37030	chr2:015553732	0.0	W/15553732-15554106	AT2G37030.1  CDS  gene_syn T1J8.21, T1J8_21  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT3G53250.1); Has 569 Blast hits to 566 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 568; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G37030.1p  transcript_id AT2G37030.1  protein_id AT2G37030.1p  transcript_id AT2G37030.1  
At2g37035	chr2:015555637	0.0	C/15555637-15556780,15555374-15555531	AT2G37035.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 14 Blast hits to 14 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G37035.1p  transcript_id AT2G37035.1  protein_id AT2G37035.1p  transcript_id AT2G37035.1  
At2g37040	chr2:015559810	0.0	C/15559810-15560237,15557602-15559351	AT2G37040.1  CDS  gene_syn CI0004, Phe ammonia lyase 1, T1J8.22, T1J8_22, pal1  gene pal1  function encodes a protein similar to phenylalanine ammonia-lyase  go_component cytoplasm|GO:0005737||IEA  go_process defense response|GO:0006952|7888622|TAS  go_process response to oxidative stress|GO:0006979|15634198|IEP  go_process response to wounding|GO:0009611|7888622|TAS  go_process phenylpropanoid biosynthetic process|GO:0009699||TAS  go_function phenylalanine ammonia-lyase activity|GO:0045548|7888622|ISS  go_function phenylalanine ammonia-lyase activity|GO:0045548||TAS  product pal1 (Phe ammonia lyase 1); phenylalanine ammonia-lyase  note Phe ammonia lyase 1 (pal1); FUNCTIONS IN: phenylalanine ammonia-lyase activity; INVOLVED IN: response to oxidative stress, phenylpropanoid biosynthetic process, response to wounding, defense response; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phenylalanine/histidine ammonia-lyase (InterPro:IPR001106), L-Aspartase-like (InterPro:IPR008948), Phenylalanine ammonia-lyase (InterPro:IPR005922); BEST Arabidopsis thaliana protein match is: PAL2; phenylalanine ammonia-lyase (TAIR:AT3G53260.1); Has 3117 Blast hits to 3112 proteins in 832 species: Archae - 21; Bacteria - 1670; Metazoa - 68; Fungi - 91; Plants - 781; Viruses - 0; Other Eukaryotes - 486 (source: NCBI BLink).  protein_id AT2G37040.1p  transcript_id AT2G37040.1  protein_id AT2G37040.1p  transcript_id AT2G37040.1  
At2g37050	chr2:015569290	0.0	W/15569290-15569368,15569621-15570158,15570242-15570747,15570821-15570953,15571041-15571112,15571199-15571267,15571345-15571416,15571517-15571582,15571671-15571834,15571924-15572168,15572262-15572388,15572469-15572537,15572613-15572799,15572899-15573034,15573136-15573477	AT2G37050.3  CDS  gene_syn T2N18.19, T2N18_19  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_function kinase activity|GO:0016301||ISS  product kinase  note kinase; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / protein kinase family protein (TAIR:AT1G67720.1); Has 116448 Blast hits to 91621 proteins in 3398 species: Archae - 65; Bacteria - 8407; Metazoa - 40093; Fungi - 6891; Plants - 44100; Viruses - 399; Other Eukaryotes - 16493 (source: NCBI BLink).  protein_id AT2G37050.3p  transcript_id AT2G37050.3  protein_id AT2G37050.3p  transcript_id AT2G37050.3  
At2g37050	chr2:015569290	0.0	W/15569290-15569368,15569621-15570158,15570242-15570747,15570821-15570953,15571041-15571112,15571199-15571267,15571345-15571416,15571517-15571582,15571671-15571834,15571927-15572168,15572262-15572388,15572469-15572537,15572613-15572799,15572899-15573034,15573136-15573477	AT2G37050.1  CDS  gene_syn T2N18.19, T2N18_19  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_function kinase activity|GO:0016301||ISS  product kinase  note kinase; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / protein kinase family protein (TAIR:AT1G67720.1); Has 116302 Blast hits to 91646 proteins in 3398 species: Archae - 65; Bacteria - 8429; Metazoa - 40074; Fungi - 6895; Plants - 43934; Viruses - 399; Other Eukaryotes - 16506 (source: NCBI BLink).  protein_id AT2G37050.1p  transcript_id AT2G37050.1  protein_id AT2G37050.1p  transcript_id AT2G37050.1  
At2g37050	chr2:015569290	0.0	W/15569290-15569368,15569621-15570158,15570242-15570747,15570821-15570953,15571041-15571112,15571199-15571267,15571345-15571416,15571517-15571582,15571671-15571834,15571927-15572168,15572262-15572388,15572469-15572545	AT2G37050.2  CDS  gene_syn T2N18.19, T2N18_19  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_function kinase activity|GO:0016301||ISS  product kinase  note kinase; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / protein kinase family protein (TAIR:AT1G67720.1); Has 48675 Blast hits to 24833 proteins in 806 species: Archae - 14; Bacteria - 1035; Metazoa - 7212; Fungi - 384; Plants - 37014; Viruses - 86; Other Eukaryotes - 2930 (source: NCBI BLink).  protein_id AT2G37050.2p  transcript_id AT2G37050.2  protein_id AT2G37050.2p  transcript_id AT2G37050.2  
At2g37060	chr2:015576336	0.0	W/15576336-15576562,15576816-15576945,15577070-15577075,15577222-15577296,15577420-15577461,15577619-15577660	AT2G37060.1  CDS  gene_syn NF-YB8, NUCLEAR FACTOR Y, SUBUNIT B8, T2N18.18, T2N18_18  gene NF-YB8  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YB8 (NUCLEAR FACTOR Y, SUBUNIT B8); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT B8 (NF-YB8); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: NF-YB10 (NUCLEAR FACTOR Y, SUBUNIT B10); transcription factor (TAIR:AT3G53340.1); Has 989 Blast hits to 989 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 385; Fungi - 228; Plants - 296; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT2G37060.1p  transcript_id AT2G37060.1  protein_id AT2G37060.1p  transcript_id AT2G37060.1  
At2g37060	chr2:015576336	0.0	W/15576336-15576562,15576816-15576945,15577070-15577075,15577222-15577296,15577420-15577461,15577619-15577660	AT2G37060.2  CDS  gene_syn NF-YB8, NUCLEAR FACTOR Y, SUBUNIT B8, T2N18.18, T2N18_18  gene NF-YB8  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YB8 (NUCLEAR FACTOR Y, SUBUNIT B8); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT B8 (NF-YB8); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: NF-YB10 (NUCLEAR FACTOR Y, SUBUNIT B10); transcription factor (TAIR:AT3G53340.1); Has 989 Blast hits to 989 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 385; Fungi - 228; Plants - 296; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT2G37060.2p  transcript_id AT2G37060.2  protein_id AT2G37060.2p  transcript_id AT2G37060.2  
At2g37060	chr2:015576336	0.0	W/15576336-15576562,15576816-15576945,15577070-15577075,15577222-15577296,15577420-15577461,15577619-15577660	AT2G37060.3  CDS  gene_syn NF-YB8, NUCLEAR FACTOR Y, SUBUNIT B8, T2N18.18, T2N18_18  gene NF-YB8  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YB8 (NUCLEAR FACTOR Y, SUBUNIT B8); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT B8 (NF-YB8); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: NF-YB10 (NUCLEAR FACTOR Y, SUBUNIT B10); transcription factor (TAIR:AT3G53340.1); Has 989 Blast hits to 989 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 385; Fungi - 228; Plants - 296; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT2G37060.3p  transcript_id AT2G37060.3  protein_id AT2G37060.3p  transcript_id AT2G37060.3  
At2g37070	chr2:015578415	0.0	W/15578415-15578547,15578706-15578873,15578957-15579163,15579591-15579628,15579715-15579783,15579936-15580080,15580161-15580750,15580883-15581125	AT2G37070.1  CDS  gene_syn T2N18.17, T2N18_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53320.1); Has 2066 Blast hits to 650 proteins in 130 species: Archae - 0; Bacteria - 60; Metazoa - 370; Fungi - 188; Plants - 51; Viruses - 9; Other Eukaryotes - 1388 (source: NCBI BLink).  protein_id AT2G37070.1p  transcript_id AT2G37070.1  protein_id AT2G37070.1p  transcript_id AT2G37070.1  
At2g37080	chr2:015584038	0.0	C/15584038-15584057,15583686-15583866,15581565-15583115	AT2G37080.1  CDS  gene_syn T2N18.16, T2N18_16  go_component chloroplast|GO:0009507|18431481|IDA  product myosin heavy chain-related  note myosin heavy chain-related; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G60210.1); Has 114328 Blast hits to 58036 proteins in 2136 species: Archae - 1280; Bacteria - 16662; Metazoa - 54797; Fungi - 8778; Plants - 4389; Viruses - 624; Other Eukaryotes - 27798 (source: NCBI BLink).  protein_id AT2G37080.1p  transcript_id AT2G37080.1  protein_id AT2G37080.1p  transcript_id AT2G37080.1  
At2g37090	chr2:015588529	0.0	C/15588529-15589223,15588221-15588449,15587671-15587802	AT2G37090.1  CDS  gene_syn IRREGULAR XYLEM 9, IRX9, T2N18.15, T2N18_15  gene IRX9  function The IRX9 gene encodes a putative family 43 glycosyl transferase. It was coordinately expressed with the cellulose synthase subunits during secondary cell wall formation. Cell wall analysis revealed a decrease in the abundance of xylan in the irx9 mutant, indicating that IRX9 is required for xylan synthesis. Mutants have irregular xylem phenotype suggesting a role in secondary cell wall biosynthesis.  go_component Golgi apparatus|GO:0005794|17322407|IDA  go_process secondary cell wall biogenesis|GO:0009834|15980264|IMP  go_process glucuronoxylan metabolic process|GO:0010413|17322407|IMP  go_process glucuronoxylan biosynthetic process|GO:0010417|17237350|IGI  go_process xylan biosynthetic process|GO:0045492|16844780|IMP  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function xylosyltransferase activity|GO:0042285|17944810|IMP  product IRX9 (IRREGULAR XYLEM 9); transferase, transferring glycosyl groups / xylosyltransferase  note IRREGULAR XYLEM 9 (IRX9); FUNCTIONS IN: xylosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: glucuronoxylan metabolic process, xylan biosynthetic process, secondary cell wall biogenesis, glucuronoxylan biosynthetic process; LOCATED IN: Golgi apparatus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 43 (InterPro:IPR005027); BEST Arabidopsis thaliana protein match is: glycosyl transferase family 43 protein (TAIR:AT1G27600.2); Has 461 Blast hits to 460 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 286; Fungi - 0; Plants - 165; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT2G37090.1p  transcript_id AT2G37090.1  protein_id AT2G37090.1p  transcript_id AT2G37090.1  
At2g37100	chr2:015591147	0.0	W/15591147-15592040	AT2G37100.1  CDS  gene_syn T2N18.14, T2N18_14  go_component chloroplast|GO:0009507||IEA  go_process chromosome organization|GO:0051276||ISS  go_function DNA binding|GO:0003677||ISS  product protamine P1 family protein  note protamine P1 family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: chromosome organization; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G03110.1); Has 239 Blast hits to 225 proteins in 58 species: Archae - 0; Bacteria - 5; Metazoa - 125; Fungi - 23; Plants - 48; Viruses - 12; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT2G37100.1p  transcript_id AT2G37100.1  protein_id AT2G37100.1p  transcript_id AT2G37100.1  
At2g37110	chr2:015592689	0.0	W/15592689-15592977,15593183-15593385,15593490-15593726	AT2G37110.1  CDS  gene_syn T2N18.13, T2N18_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40935.1); Has 224 Blast hits to 222 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 10; Plants - 210; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G37110.1p  transcript_id AT2G37110.1  protein_id AT2G37110.1p  transcript_id AT2G37110.1  
At2g37120	chr2:015594789	0.0	C/15594789-15594815,15594250-15594453	AT2G37120.1  CDS  gene_syn T2N18.12, T2N18_12  go_component nucleus|GO:0005634||IEA  go_component endomembrane system|GO:0012505||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product DNA-binding S1FA family protein  note DNA-binding S1FA family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA binding protein S1FA (InterPro:IPR006779); Has 54 Blast hits to 54 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G37120.1p  transcript_id AT2G37120.1  protein_id AT2G37120.1p  transcript_id AT2G37120.1  
At2g37130	chr2:015599603	0.0	C/15599603-15599734,15599309-15599497,15599052-15599220,15598225-15598625	AT2G37130.2  CDS  gene_syn T2N18.11, T2N18_11  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process defense response to fungus|GO:0050832|17257167|IMP  go_function peroxidase activity|GO:0004601||ISS  product peroxidase 21 (PER21) (P21) (PRXR5)  note peroxidase 21 (PER21) (P21) (PRXR5); FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: defense response to fungus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: PRXR1; electron carrier/ heme binding / peroxidase (TAIR:AT4G21960.1); Has 2525 Blast hits to 2513 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 33; Plants - 2465; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT2G37130.2p  transcript_id AT2G37130.2  protein_id AT2G37130.2p  transcript_id AT2G37130.2  
At2g37130	chr2:015599929	0.0	C/15599929-15600004,15599603-15599751,15599309-15599497,15599052-15599220,15598225-15598625	AT2G37130.1  CDS  gene_syn T2N18.11, T2N18_11  go_component endomembrane system|GO:0012505||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process defense response to fungus|GO:0050832|17257167|IMP  go_function peroxidase activity|GO:0004601||ISS  product peroxidase 21 (PER21) (P21) (PRXR5)  note peroxidase 21 (PER21) (P21) (PRXR5); FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: defense response to fungus; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: PRXR1; electron carrier/ heme binding / peroxidase (TAIR:AT4G21960.1); Has 2520 Blast hits to 2508 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 33; Plants - 2460; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT2G37130.1p  transcript_id AT2G37130.1  protein_id AT2G37130.1p  transcript_id AT2G37130.1  
At2g37140	chr2:015602863	0.0	W/15602863-15602982,15603126-15603329	AT2G37140.1  CDS  gene_syn T2N18.10, T2N18_10  go_function magnesium ion binding|GO:0000287||IEA  go_function lyase activity|GO:0016829||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product terpene synthase/cyclase-related  note terpene synthase/cyclase-related; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949); BEST Arabidopsis thaliana protein match is: ATTS1; lyase/ magnesium ion binding (TAIR:AT4G15870.1); Has 149 Blast hits to 148 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G37140.1p  transcript_id AT2G37140.1  protein_id AT2G37140.1p  transcript_id AT2G37140.1  
At2g37150	chr2:015605889	0.0	C/15605889-15605988,15605023-15605754,15604532-15604947,15604240-15604341,15604025-15604162,15603748-15603900	AT2G37150.1  CDS  gene_syn T2N18.9, T2N18_9  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G34040.1); Has 6107 Blast hits to 5877 proteins in 225 species: Archae - 0; Bacteria - 10; Metazoa - 1921; Fungi - 408; Plants - 2669; Viruses - 36; Other Eukaryotes - 1063 (source: NCBI BLink).  protein_id AT2G37150.1p  transcript_id AT2G37150.1  protein_id AT2G37150.1p  transcript_id AT2G37150.1  
At2g37150	chr2:015605889	0.0	C/15605889-15605988,15605023-15605754,15604532-15604947,15604240-15604341,15604025-15604162,15603748-15603900	AT2G37150.2  CDS  gene_syn T2N18.9, T2N18_9  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G34040.1); Has 6107 Blast hits to 5877 proteins in 225 species: Archae - 0; Bacteria - 10; Metazoa - 1921; Fungi - 408; Plants - 2669; Viruses - 36; Other Eukaryotes - 1063 (source: NCBI BLink).  protein_id AT2G37150.2p  transcript_id AT2G37150.2  protein_id AT2G37150.2p  transcript_id AT2G37150.2  
At2g37160	chr2:015609047	0.0	W/15609047-15609229,15609420-15609737,15609827-15609935,15610024-15610117,15610559-15610646,15610733-15610816,15611011-15611107,15611205-15611292,15611442-15611547,15611628-15611720,15612155-15612529	AT2G37160.1  CDS  gene_syn T2N18.8, T2N18_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G53390.2); Has 13878 Blast hits to 7458 proteins in 380 species: Archae - 36; Bacteria - 3543; Metazoa - 4573; Fungi - 2572; Plants - 1053; Viruses - 0; Other Eukaryotes - 2101 (source: NCBI BLink).  protein_id AT2G37160.1p  transcript_id AT2G37160.1  protein_id AT2G37160.1p  transcript_id AT2G37160.1  
At2g37160	chr2:015609047	0.0	W/15609047-15609229,15609420-15609737,15609827-15609935,15610024-15610117,15610559-15610646,15610733-15610816,15611011-15611107,15611205-15611292,15611442-15611552,15611633-15611720,15612155-15612529	AT2G37160.2  CDS  gene_syn T2N18.8, T2N18_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G53390.2); Has 13878 Blast hits to 7458 proteins in 380 species: Archae - 36; Bacteria - 3543; Metazoa - 4573; Fungi - 2572; Plants - 1053; Viruses - 0; Other Eukaryotes - 2101 (source: NCBI BLink).  protein_id AT2G37160.2p  transcript_id AT2G37160.2  protein_id AT2G37160.2p  transcript_id AT2G37160.2  
At2g37170	chr2:015614491	0.0	C/15614491-15614791,15614074-15614369,15613842-15613982,15613624-15613743	AT2G37170.1  CDS  gene_syn PIP2;2, PIP2B, PLASMA MEMBRANE INTRINSIC PROTEIN 2, PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, T2N18.7, T2N18_7  gene PIP2B  function a member of the plasma membrane intrinsic protein subfamily PIP2. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed specifically in the vascular bundles and protein level increases slightly during leaf dev  go_component chloroplast|GO:0009507|15028209|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component plasma membrane|GO:0005886|7920711|IDA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_process water transport|GO:0006833|7920711|IDA  go_process response to water deprivation|GO:0009414|16235111|IEP  go_process response to salt stress|GO:0009651|16183846|IEP  go_function water channel activity|GO:0015250|7920711|IDA  go_function water channel activity|GO:0015250||ISS  product PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2); water channel  note PLASMA MEMBRANE INTRINSIC PROTEIN 2 (PIP2B); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, response to salt stress, response to water deprivation, water transport; LOCATED IN: plasma membrane, chloroplast, membrane; EXPRESSED IN: root, cultured cell, callus; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: RD28 (RESPONSIVE TO DESICCATION 28); water channel (TAIR:AT2G37180.1); Has 6798 Blast hits to 6791 proteins in 1258 species: Archae - 57; Bacteria - 2640; Metazoa - 1266; Fungi - 293; Plants - 1491; Viruses - 2; Other Eukaryotes - 1049 (source: NCBI BLink).  protein_id AT2G37170.1p  transcript_id AT2G37170.1  protein_id AT2G37170.1p  transcript_id AT2G37170.1  
At2g37180	chr2:015617779	0.0	W/15617779-15618079,15618201-15618496,15618588-15618728,15618818-15618937	AT2G37180.1  CDS  gene_syn PIP2;3, PIP2C, PLASMA MEMBRANE INTRINSIC PROTEIN 2;3, PLASMA MEMBRANE INTRINSIC PROTEIN 2C, RD28, RESPONSIVE TO DESICCATION 28, T2N18.6, T2N18_6  gene RD28  function a member of the plasma membrane intrinsic protein PIP2. functions as aquaporin and is involved in dessication.  go_component plasma membrane|GO:0005886|15060130|IDA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_process response to osmotic stress|GO:0006970|9177195|IGI  go_process response to desiccation|GO:0009269||IEP  go_process response to water deprivation|GO:0009414|16235111|IEP  go_function water channel activity|GO:0015250|9177195|IDA  go_function water channel activity|GO:0015250||ISS  product RD28 (RESPONSIVE TO DESICCATION 28); water channel  note RESPONSIVE TO DESICCATION 28 (RD28); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, response to water deprivation, response to desiccation, response to osmotic stress; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: shoot, flower, root, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2); water channel (TAIR:AT2G37170.1); Has 6812 Blast hits to 6804 proteins in 1258 species: Archae - 57; Bacteria - 2635; Metazoa - 1272; Fungi - 293; Plants - 1495; Viruses - 2; Other Eukaryotes - 1058 (source: NCBI BLink).  protein_id AT2G37180.1p  transcript_id AT2G37180.1  protein_id AT2G37180.1p  transcript_id AT2G37180.1  
At2g37190	chr2:015619559	0.0	C/15619559-15620059	AT2G37190.1  CDS  gene_syn T2N18.5, T2N18_5  go_component nucleus|GO:0005634|14617066|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_component cytosolic large ribosomal subunit|GO:0022625||ISS  go_process response to cold|GO:0009409|14617066|IEP  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L12 (RPL12A)  note 60S ribosomal protein L12 (RPL12A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: response to cold, ribosome biogenesis; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L11 (InterPro:IPR000911); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L12 (RPL12B) (TAIR:AT3G53430.1); Has 1152 Blast hits to 1152 proteins in 433 species: Archae - 208; Bacteria - 278; Metazoa - 292; Fungi - 109; Plants - 81; Viruses - 0; Other Eukaryotes - 184 (source: NCBI BLink).  protein_id AT2G37190.1p  transcript_id AT2G37190.1  protein_id AT2G37190.1p  transcript_id AT2G37190.1  
At2g37195	chr2:015620370	0.0	W/15620370-15620500,15620771-15620882,15621216-15621281,15621372-15621464	AT2G37195.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 12 Blast hits to 12 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G37195.1p  transcript_id AT2G37195.1  protein_id AT2G37195.1p  transcript_id AT2G37195.1  
At2g37200	chr2:015622827	0.0	C/15622827-15623047,15622399-15622531,15622098-15622286	AT2G37200.1  CDS  gene_syn T2N18.4, T2N18_4  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane protein, putative  note integral membrane protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28370.1); Has 99 Blast hits to 99 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G37200.1p  transcript_id AT2G37200.1  protein_id AT2G37200.1p  transcript_id AT2G37200.1  
At2g37210	chr2:015626712	0.0	C/15626712-15626834,15626302-15626399,15626114-15626144,15625532-15625631,15624638-15624708,15624411-15624554,15624253-15624333	AT2G37210.1  CDS  gene_syn T2N18.3, T2N18_3  function Encodes a protein of unknown function. It has been crystallized and shown to be structurally almost identical to the protein encoded by At5g11950.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, flower, seed; EXPRESSED DURING: 4 anthesis, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53450.1); Has 3293 Blast hits to 3291 proteins in 780 species: Archae - 7; Bacteria - 1924; Metazoa - 10; Fungi - 79; Plants - 196; Viruses - 0; Other Eukaryotes - 1077 (source: NCBI BLink).  protein_id AT2G37210.1p  transcript_id AT2G37210.1  protein_id AT2G37210.1p  transcript_id AT2G37210.1  
At2g37220	chr2:015635969	0.0	C/15635969-15636331,15635753-15635854,15635143-15635481,15634980-15635045	AT2G37220.1  CDS  gene_syn F3G5.1, F3G5_1  function Encodes a chloroplast RNA binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component stromule|GO:0010319|16923014|IDA  go_process response to cold|GO:0009409|16574749|IEP  go_process response to cold|GO:0009409|16923014|IEP  go_process response to abscisic acid stimulus|GO:0009737|18768909|IEP  go_process innate immune response|GO:0045087|17450127|IDA  go_function RNA binding|GO:0003723||ISS  go_function poly(U) binding|GO:0008266|17511964|IDA  product 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative  note 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative; FUNCTIONS IN: RNA binding, poly(U) binding; INVOLVED IN: response to cold, response to abscisic acid stimulus, innate immune response; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: CP29; RNA binding / poly(U) binding (TAIR:AT3G53460.2); Has 36686 Blast hits to 19194 proteins in 663 species: Archae - 20; Bacteria - 2312; Metazoa - 21095; Fungi - 4112; Plants - 5208; Viruses - 0; Other Eukaryotes - 3939 (source: NCBI BLink).  protein_id AT2G37220.1p  transcript_id AT2G37220.1  protein_id AT2G37220.1p  transcript_id AT2G37220.1  
At2g37230	chr2:015637177	0.0	C/15637177-15639450	AT2G37230.1  CDS  gene_syn F3G5.2, F3G5_2  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G02060.1); Has 17936 Blast hits to 5762 proteins in 186 species: Archae - 4; Bacteria - 20; Metazoa - 375; Fungi - 355; Plants - 16510; Viruses - 0; Other Eukaryotes - 672 (source: NCBI BLink).  protein_id AT2G37230.1p  transcript_id AT2G37230.1  protein_id AT2G37230.1p  transcript_id AT2G37230.1  
At2g37240	chr2:015641543	0.0	C/15641543-15641720,15641326-15641458,15641203-15641248,15641057-15641116,15640933-15640969,15640761-15640840,15640572-15640663,15640411-15640471,15640235-15640294	AT2G37240.1  CDS  gene_syn F3G5.3, F3G5_3  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65840.1); Has 252 Blast hits to 252 proteins in 46 species: Archae - 0; Bacteria - 20; Metazoa - 145; Fungi - 10; Plants - 66; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT2G37240.1p  transcript_id AT2G37240.1  protein_id AT2G37240.1p  transcript_id AT2G37240.1  
At2g37250	chr2:015641991	0.0	W/15641991-15642287,15642595-15642735,15642816-15643088,15643175-15643318	AT2G37250.1  CDS  gene_syn ADENOSINE KINASE, ADK, ATPADK1, F3G5.4, F3G5_4  gene ADK  function encodes adenylate kinase that is located in the chloroplast involved in the coordination of metabolism and growth  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component chloroplast|GO:0009507|15618410|IDA  go_component chloroplast stroma|GO:0009570|15618410|IDA  go_process amino acid biosynthetic process|GO:0008652|15618410|IMP  go_process root development|GO:0048364|15618410|IMP  go_process shoot development|GO:0048367|15618410|IMP  go_function adenylate kinase activity|GO:0004017|15618410|IDA  go_function nucleotide kinase activity|GO:0019201||ISS  product ADK (ADENOSINE KINASE); adenylate kinase/ nucleotide kinase  note ADENOSINE KINASE (ADK); FUNCTIONS IN: nucleotide kinase activity, adenylate kinase activity; INVOLVED IN: shoot development, amino acid biosynthetic process, root development; LOCATED IN: nucleus, chloroplast stroma, chloroplast, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adenylate kinase, subfamily (InterPro:IPR006259), Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: adenylate kinase family protein (TAIR:AT2G39270.1); Has 8572 Blast hits to 8468 proteins in 1854 species: Archae - 66; Bacteria - 4472; Metazoa - 964; Fungi - 295; Plants - 251; Viruses - 0; Other Eukaryotes - 2524 (source: NCBI BLink).  protein_id AT2G37250.1p  transcript_id AT2G37250.1  protein_id AT2G37250.1p  transcript_id AT2G37250.1  
At2g37260	chr2:015645277	0.0	W/15645277-15645489,15645576-15645701,15645768-15646408,15646483-15646792	AT2G37260.1  CDS  gene_syn ATWRKY44, DR. STRANGELOVE 1, DSL1, F3G5.5, F3G5_5, TRANSPARENT TESTA GLABRA 2, TTG2, WRKY44  gene TTG2  function Encodes a protein similar to WRKY transcription factors that is expressed in the seed integument and endosperm. Mutants are defective in proanthocyanidin synthesis and seed mucilate deposition. Seeds are yellow colored. Seed size is also affected; seeds are reduced in size but only when the mutant allele is transmitted through the female parent.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_process epidermal cell fate specification|GO:0009957|17766401|IMP  go_process seed coat development|GO:0010214|15598800|IMP  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product TTG2 (TRANSPARENT TESTA GLABRA 2); transcription factor  note TRANSPARENT TESTA GLABRA 2 (TTG2); FUNCTIONS IN: transcription factor activity; INVOLVED IN: seed coat development, epidermal cell fate specification, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: F mature embryo stage, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY3; transcription factor (TAIR:AT2G03340.1); Has 3436 Blast hits to 1745 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 3392; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT2G37260.1p  transcript_id AT2G37260.1  protein_id AT2G37260.1p  transcript_id AT2G37260.1  
At2g37260	chr2:015645603	0.0	W/15645603-15645701,15645774-15646408,15646483-15646792	AT2G37260.2  CDS  gene_syn ATWRKY44, DR. STRANGELOVE 1, DSL1, F3G5.5, F3G5_5, TRANSPARENT TESTA GLABRA 2, TTG2, WRKY44  gene TTG2  function Encodes a protein similar to WRKY transcription factors that is expressed in the seed integument and endosperm. Mutants are defective in proanthocyanidin synthesis and seed mucilate deposition. Seeds are yellow colored. Seed size is also affected; seeds are reduced in size but only when the mutant allele is transmitted through the female parent.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_process epidermal cell fate specification|GO:0009957|17766401|IMP  go_process seed coat development|GO:0010214|15598800|IMP  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product TTG2 (TRANSPARENT TESTA GLABRA 2); transcription factor  note TRANSPARENT TESTA GLABRA 2 (TTG2); FUNCTIONS IN: transcription factor activity; INVOLVED IN: seed coat development, epidermal cell fate specification, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: F mature embryo stage, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY3; transcription factor (TAIR:AT2G03340.1); Has 3453 Blast hits to 1752 proteins in 114 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 0; Plants - 3402; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT2G37260.2p  transcript_id AT2G37260.2  protein_id AT2G37260.2p  transcript_id AT2G37260.2  
At2g37270	chr2:015648950	0.0	C/15648950-15649042,15648334-15648605,15648032-15648235,15647883-15647937	AT2G37270.1  CDS  gene_syn ATRPS5B, F3G5.6, F3G5_6, RIBOSOMAL PROTEIN 5B  gene ATRPS5B  function One of two genes encoding the ribosomal protein S5. Expressed at a lower level compared to ATRPS5A.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ATRPS5B (RIBOSOMAL PROTEIN 5B); structural constituent of ribosome  note RIBOSOMAL PROTEIN 5B (ATRPS5B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: fruit, cultured cell, pollen tube, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Ribosomal protein S7, eukaryotic/archaeal (InterPro:IPR005716), Ribosomal protein S7 (InterPro:IPR000235); BEST Arabidopsis thaliana protein match is: ATRPS5A (RIBOSOMAL PROTEIN 5A); structural constituent of ribosome (TAIR:AT3G11940.2); Has 5669 Blast hits to 5669 proteins in 1926 species: Archae - 177; Bacteria - 2580; Metazoa - 351; Fungi - 117; Plants - 932; Viruses - 0; Other Eukaryotes - 1512 (source: NCBI BLink).  protein_id AT2G37270.1p  transcript_id AT2G37270.1  protein_id AT2G37270.1p  transcript_id AT2G37270.1  
At2g37270	chr2:015648950	0.0	C/15648950-15649042,15648334-15648605,15648032-15648235,15647883-15647937	AT2G37270.2  CDS  gene_syn ATRPS5B, F3G5.6, F3G5_6, RIBOSOMAL PROTEIN 5B  gene ATRPS5B  function One of two genes encoding the ribosomal protein S5. Expressed at a lower level compared to ATRPS5A.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ATRPS5B (RIBOSOMAL PROTEIN 5B); structural constituent of ribosome  note RIBOSOMAL PROTEIN 5B (ATRPS5B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: fruit, cultured cell, pollen tube, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Ribosomal protein S7, eukaryotic/archaeal (InterPro:IPR005716), Ribosomal protein S7 (InterPro:IPR000235); BEST Arabidopsis thaliana protein match is: ATRPS5A (RIBOSOMAL PROTEIN 5A); structural constituent of ribosome (TAIR:AT3G11940.2); Has 5669 Blast hits to 5669 proteins in 1926 species: Archae - 177; Bacteria - 2580; Metazoa - 351; Fungi - 117; Plants - 932; Viruses - 0; Other Eukaryotes - 1512 (source: NCBI BLink).  protein_id AT2G37270.2p  transcript_id AT2G37270.2  protein_id AT2G37270.2p  transcript_id AT2G37270.2  
At2g37280	chr2:015650400	0.0	W/15650400-15650686,15650756-15650879,15650959-15651044,15651113-15651197,15651285-15651444,15651529-15651605,15651689-15651742,15651823-15651913,15651994-15652295,15652377-15652658,15652736-15653049,15653132-15653292,15653370-15653473,15653568-15653721,15653797-15653919,15654006-15654079,15654161-15654493,15654573-15654863,15654947-15655030,15655118-15655251,15655338-15655565,15655641-15656067,15656151-15656417	AT2G37280.1  CDS  gene_syn ATPDR5, F3G5.7, F3G5_7, PDR5, PLEIOTROPIC DRUG RESISTANCE 5  gene PDR5  go_component plasma membrane|GO:0005886|17317660|IDA  go_process multidrug transport|GO:0006855|16506311|ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product PDR5 (PLEIOTROPIC DRUG RESISTANCE 5); ATPase, coupled to transmembrane movement of substances  note PLEIOTROPIC DRUG RESISTANCE 5 (PDR5); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: multidrug transport; LOCATED IN: plasma membrane; EXPRESSED IN: inflorescence meristem, hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 (InterPro:IPR000412), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PDR9 (PLEIOTROPIC DRUG RESISTANCE 9); ATPase, coupled to transmembrane movement of substances (TAIR:AT3G53480.1); Has 252550 Blast hits to 167041 proteins in 2558 species: Archae - 5345; Bacteria - 180967; Metazoa - 8785; Fungi - 4802; Plants - 3238; Viruses - 4; Other Eukaryotes - 49409 (source: NCBI BLink).  protein_id AT2G37280.1p  transcript_id AT2G37280.1  protein_id AT2G37280.1p  transcript_id AT2G37280.1  
At2g37290	chr2:015661289	0.0	C/15661289-15661335,15661140-15661209,15660102-15660959,15659900-15660031,15659693-15659806,15659533-15659591,15659379-15659445,15659241-15659292,15659046-15659138,15658863-15658946,15658348-15658757,15658143-15658204,15657986-15658055,15657672-15657854,15657409-15657536,15657150-15657231,15656935-15657072	AT2G37290.1  CDS  gene_syn F3G5.8, F3G5_8  go_component chloroplast|GO:0009507|15028209|IDA  go_process regulation of Rab GTPase activity|GO:0032313||IEA  go_function RAB GTPase activator activity|GO:0005097||IEA  product RabGAP/TBC domain-containing protein  note RabGAP/TBC domain-containing protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: RabGAP/TBC domain-containing protein (TAIR:AT3G55020.1); Has 26618 Blast hits to 15639 proteins in 702 species: Archae - 52; Bacteria - 5048; Metazoa - 10990; Fungi - 2347; Plants - 848; Viruses - 316; Other Eukaryotes - 7017 (source: NCBI BLink).  protein_id AT2G37290.1p  transcript_id AT2G37290.1  protein_id AT2G37290.1p  transcript_id AT2G37290.1  
At2g37300	chr2:015662845	0.0	C/15662845-15663231	AT2G37300.1  CDS  gene_syn F3G5.9, F3G5_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; Has 81 Blast hits to 52 proteins in 24 species: Archae - 0; Bacteria - 6; Metazoa - 12; Fungi - 19; Plants - 14; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT2G37300.1p  transcript_id AT2G37300.1  protein_id AT2G37300.1p  transcript_id AT2G37300.1  
At2g37310	chr2:015665102	0.0	C/15665102-15667075	AT2G37310.1  CDS  gene_syn F3G5.10, F3G5_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G29760.1); Has 14420 Blast hits to 5165 proteins in 166 species: Archae - 2; Bacteria - 6; Metazoa - 78; Fungi - 70; Plants - 13986; Viruses - 0; Other Eukaryotes - 278 (source: NCBI BLink).  protein_id AT2G37310.1p  transcript_id AT2G37310.1  protein_id AT2G37310.1p  transcript_id AT2G37310.1  
At2g37320	chr2:015667223	0.0	W/15667223-15668725	AT2G37320.1  CDS  gene_syn F3G5.11, F3G5_11  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, leaf whorl, embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24000.1); Has 15361 Blast hits to 4963 proteins in 153 species: Archae - 0; Bacteria - 2; Metazoa - 81; Fungi - 26; Plants - 15029; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).  protein_id AT2G37320.1p  transcript_id AT2G37320.1  protein_id AT2G37320.1p  transcript_id AT2G37320.1  
At2g37330	chr2:015669190	0.0	W/15669190-15669450,15669534-15669779,15669858-15670172	AT2G37330.1  CDS  gene_syn ALS3, ALUMINUM SENSITIVE 3, F3G5.12, F3G5_12  gene ALS3  function Encodes an ABC transporter-like protein, without an ATPase domain, required for aluminum (Al) resistance/tolerance and may function to redistribute accumulated Al away from sensitive tissues in order to protect the growing root from the toxic effects of Al.  go_component plasma membrane|GO:0005886|15659095|IDA  go_process response to aluminum ion|GO:0010044|12223767|IMP  product ALS3 (ALUMINUM SENSITIVE 3)  note ALUMINUM SENSITIVE 3 (ALS3); INVOLVED IN: response to aluminum ion; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00245 (InterPro:IPR005226); Has 967 Blast hits to 967 proteins in 466 species: Archae - 23; Bacteria - 835; Metazoa - 0; Fungi - 8; Plants - 18; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT2G37330.1p  transcript_id AT2G37330.1  protein_id AT2G37330.1p  transcript_id AT2G37330.1  
At2g37340	chr2:015671325	0.0	C/15671325-15671477,15671032-15671219,15670857-15670952,15670372-15670717	AT2G37340.2  CDS  gene_syn Arginine/serine-rich Zinc knuckle-containing protein 33, F3G5.13, F3G5_13, RSZ33, atRSZ33  gene RSZ33  function encodes an RS-containing Zinc knuckle protein with molecular mass of 33kDa that is localized to nuclear specks.  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nuclear speck|GO:0016607|15133128|IDA  go_component nuclear speck|GO:0016607|15686520|IDA  go_process spliceosome assembly|GO:0000245|12176998|TAS  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|12176998|TAS  go_process RNA splicing|GO:0008380|16807317|NAS  product RSZ33; nucleic acid binding / zinc ion binding  note RSZ33; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, CCHC retroviral-type (InterPro:IPR013084); BEST Arabidopsis thaliana protein match is: zinc knuckle (CCHC-type) family protein (TAIR:AT3G53500.2); Has 15844 Blast hits to 12824 proteins in 390 species: Archae - 0; Bacteria - 11; Metazoa - 5394; Fungi - 779; Plants - 822; Viruses - 8024; Other Eukaryotes - 814 (source: NCBI BLink).  protein_id AT2G37340.2p  transcript_id AT2G37340.2  protein_id AT2G37340.2p  transcript_id AT2G37340.2  
At2g37340	chr2:015671561	0.0	C/15671561-15671584,15671325-15671420,15671032-15671219,15670857-15670952,15670372-15670717	AT2G37340.3  CDS  gene_syn Arginine/serine-rich Zinc knuckle-containing protein 33, F3G5.13, F3G5_13, RSZ33, atRSZ33  gene RSZ33  function encodes an RS-containing Zinc knuckle protein with molecular mass of 33kDa that is localized to nuclear specks.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nuclear speck|GO:0016607|15133128|IDA  go_component nuclear speck|GO:0016607|15686520|IDA  go_process spliceosome assembly|GO:0000245|12176998|TAS  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|12176998|TAS  go_process RNA splicing|GO:0008380|16807317|NAS  product RSZ33; nucleic acid binding / nucleotide binding / zinc ion binding  note RSZ33; FUNCTIONS IN: zinc ion binding, nucleotide binding, nucleic acid binding; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, CCHC retroviral-type (InterPro:IPR013084); BEST Arabidopsis thaliana protein match is: zinc knuckle (CCHC-type) family protein (TAIR:AT3G53500.2); Has 16570 Blast hits to 13516 proteins in 393 species: Archae - 0; Bacteria - 11; Metazoa - 5922; Fungi - 846; Plants - 916; Viruses - 8024; Other Eukaryotes - 851 (source: NCBI BLink).  protein_id AT2G37340.3p  transcript_id AT2G37340.3  protein_id AT2G37340.3p  transcript_id AT2G37340.3  
At2g37340	chr2:015672225	0.0	C/15672225-15672331,15671561-15671600,15671325-15671420,15671032-15671219,15670857-15670952,15670372-15670717	AT2G37340.1  CDS  gene_syn Arginine/serine-rich Zinc knuckle-containing protein 33, F3G5.13, F3G5_13, RSZ33, atRSZ33  gene RSZ33  function encodes an RS-containing Zinc knuckle protein with molecular mass of 33kDa that is localized to nuclear specks.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nuclear speck|GO:0016607|15133128|IDA  go_component nuclear speck|GO:0016607|15686520|IDA  go_process spliceosome assembly|GO:0000245|12176998|TAS  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|12176998|TAS  go_process RNA splicing|GO:0008380|16807317|NAS  product RSZ33; nucleic acid binding / nucleotide binding / zinc ion binding  note RSZ33; FUNCTIONS IN: zinc ion binding, nucleotide binding, nucleic acid binding; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: zinc knuckle (CCHC-type) family protein (TAIR:AT3G53500.2); Has 19690 Blast hits to 16423 proteins in 487 species: Archae - 8; Bacteria - 134; Metazoa - 7850; Fungi - 1109; Plants - 1387; Viruses - 8024; Other Eukaryotes - 1178 (source: NCBI BLink).  protein_id AT2G37340.1p  transcript_id AT2G37340.1  protein_id AT2G37340.1p  transcript_id AT2G37340.1  
At2g37360	chr2:015673555	0.0	C/15673555-15675822	AT2G37360.1  CDS  gene_syn F3G5.15, F3G5_15  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ABC transporter family protein  note ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: membrane; EXPRESSED IN: petal, hypocotyl, flower, root; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 (InterPro:IPR000412), Pigment precursor permease (InterPro:IPR005284), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT3G53510.1); Has 227857 Blast hits to 207777 proteins in 2631 species: Archae - 4215; Bacteria - 158124; Metazoa - 7544; Fungi - 4064; Plants - 2743; Viruses - 12; Other Eukaryotes - 51155 (source: NCBI BLink).  protein_id AT2G37360.1p  transcript_id AT2G37360.1  protein_id AT2G37360.1p  transcript_id AT2G37360.1  
At2g37370	chr2:015679273	0.0	W/15679273-15679422,15679495-15679707,15679784-15679879,15679978-15680030,15680121-15680217,15680304-15680377,15680512-15680620,15680786-15680896,15680984-15681060,15681150-15681216,15681299-15681364,15681447-15681554,15681637-15681767,15681877-15681943,15682025-15682089,15682176-15682269,15682415-15682485,15682572-15682932	AT2G37370.1  CDS  gene_syn F3G5.16, F3G5_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13560.1); Has 7691 Blast hits to 6120 proteins in 523 species: Archae - 157; Bacteria - 689; Metazoa - 4073; Fungi - 586; Plants - 269; Viruses - 14; Other Eukaryotes - 1903 (source: NCBI BLink).  protein_id AT2G37370.1p  transcript_id AT2G37370.1  protein_id AT2G37370.1p  transcript_id AT2G37370.1  
At2g37380	chr2:015686828	0.0	W/15686828-15687793	AT2G37380.1  CDS  gene_syn F3G5.17, F3G5_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G39370.1); Has 1232 Blast hits to 312 proteins in 81 species: Archae - 0; Bacteria - 59; Metazoa - 205; Fungi - 127; Plants - 65; Viruses - 0; Other Eukaryotes - 776 (source: NCBI BLink).  protein_id AT2G37380.1p  transcript_id AT2G37380.1  protein_id AT2G37380.1p  transcript_id AT2G37380.1  
At2g37390	chr2:015694300	0.0	W/15694300-15694839,15694930-15695008,15695301-15695461	AT2G37390.1  CDS  gene_syn F3G5.18, F3G5_18  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_process metal ion transport|GO:0030001||ISS  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121), Copper chaperone, chloroplast-targeted, predicted (InterPro:IPR016578); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT3G53530.1); Has 595 Blast hits to 548 proteins in 31 species: Archae - 0; Bacteria - 6; Metazoa - 3; Fungi - 2; Plants - 584; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G37390.1p  transcript_id AT2G37390.1  protein_id AT2G37390.1p  transcript_id AT2G37390.1  
At2g37400	chr2:015696365	0.0	C/15696365-15697366	AT2G37400.1  CDS  gene_syn F3G5.19, F3G5_19  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function binding|GO:0005488||IEA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|ISS  go_process biological_process|GO:0008150||ND  product chloroplast lumen common family protein  note chloroplast lumen common family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast thylakoid lumen, plastid, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: chloroplast lumen common family protein (TAIR:AT3G53560.1); Has 1554 Blast hits to 1284 proteins in 289 species: Archae - 132; Bacteria - 762; Metazoa - 103; Fungi - 19; Plants - 70; Viruses - 0; Other Eukaryotes - 468 (source: NCBI BLink).  protein_id AT2G37400.1p  transcript_id AT2G37400.1  protein_id AT2G37400.1p  transcript_id AT2G37400.1  
At2g37410	chr2:015698119	0.0	C/15698119-15698850	AT2G37410.1  CDS  gene_syn ATTIM17-2, F3G5.20, F3G5_20, TIM17, TRANSLOCASE OF THE INNER MEMBRANE 17  gene ATTIM17-2  function Mitochondrial inner membrane translocase. Together with AtTIM17-1, TIM17-2 has a long C-terminal extension not present in other TIMs. The extension is located in the outer membrane and so TIM17-2 links the inner and outer mitochondrial membranes. The C-terminal region is essential for protein import into mitochondria via the general import pathway but is not necessary for import via the carrier pathway.  go_component mitochondrion|GO:0005739|15276431|IDA  go_function protein transporter activity|GO:0008565||IEA  go_component mitochondrion|GO:0005739|14730085|IDA  go_component mitochondrial outer membrane|GO:0005741|15722347|IDA  go_component mitochondrial inner membrane|GO:0005743|14730085|IDA  go_component mitochondrial inner membrane|GO:0005743|15722347|IDA  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744|12692332|TAS  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744||ISS  go_process protein transport|GO:0015031||ISS  go_process protein import into mitochondrial inner membrane|GO:0045039|15722347|IDA  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product ATTIM17-2; P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter  note ATTIM17-2; FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein transport, protein import into mitochondrial inner membrane; LOCATED IN: mitochondrial outer membrane, mitochondrion, mitochondrial inner membrane, mitochondrial inner membrane presequence translocase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial import inner membrane translocase, subunit Tim17/22 (InterPro:IPR003397); BEST Arabidopsis thaliana protein match is: ATTIM17-1; P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter (TAIR:AT1G20350.1); Has 1794 Blast hits to 1407 proteins in 183 species: Archae - 0; Bacteria - 119; Metazoa - 891; Fungi - 182; Plants - 80; Viruses - 2; Other Eukaryotes - 520 (source: NCBI BLink).  protein_id AT2G37410.1p  transcript_id AT2G37410.1  protein_id AT2G37410.1p  transcript_id AT2G37410.1  
At2g37410	chr2:015698119	0.0	C/15698119-15698850	AT2G37410.2  CDS  gene_syn ATTIM17-2, F3G5.20, F3G5_20, TIM17, TRANSLOCASE OF THE INNER MEMBRANE 17  gene ATTIM17-2  function Mitochondrial inner membrane translocase. Together with AtTIM17-1, TIM17-2 has a long C-terminal extension not present in other TIMs. The extension is located in the outer membrane and so TIM17-2 links the inner and outer mitochondrial membranes. The C-terminal region is essential for protein import into mitochondria via the general import pathway but is not necessary for import via the carrier pathway.  go_function protein transporter activity|GO:0008565||IEA  go_component mitochondrion|GO:0005739|14730085|IDA  go_component mitochondrial outer membrane|GO:0005741|15722347|IDA  go_component mitochondrial inner membrane|GO:0005743|14730085|IDA  go_component mitochondrial inner membrane|GO:0005743|15722347|IDA  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744|12692332|TAS  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744||ISS  go_process protein transport|GO:0015031||ISS  go_process protein import into mitochondrial inner membrane|GO:0045039|15722347|IDA  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product ATTIM17-2; P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter  note ATTIM17-2; FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein transport, protein import into mitochondrial inner membrane; LOCATED IN: mitochondrial outer membrane, mitochondrion, mitochondrial inner membrane, mitochondrial inner membrane presequence translocase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial import inner membrane translocase, subunit Tim17/22 (InterPro:IPR003397); BEST Arabidopsis thaliana protein match is: ATTIM17-1; P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter (TAIR:AT1G20350.1); Has 1794 Blast hits to 1407 proteins in 183 species: Archae - 0; Bacteria - 119; Metazoa - 891; Fungi - 182; Plants - 80; Viruses - 2; Other Eukaryotes - 520 (source: NCBI BLink).  protein_id AT2G37410.2p  transcript_id AT2G37410.2  protein_id AT2G37410.2p  transcript_id AT2G37410.2  
At2g37420	chr2:015700550	0.0	W/15700550-15700846,15700915-15701645,15701724-15701880,15701964-15702033,15702133-15702209,15702279-15702332,15702435-15702515,15702602-15702713,15702796-15702882,15702954-15703129,15703212-15703373,15703476-15703583,15703664-15703822,15703906-15703989,15704078-15704283,15704374-15704475,15704551-15704660,15704735-15704886,15704971-15705165	AT2G37420.1  CDS  gene_syn F3G5.21, F3G5_21  go_component microtubule associated complex|GO:0005875||IEA  go_component chloroplast|GO:0009507||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product kinesin motor protein-related  note kinesin motor protein-related; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin motor protein-related (TAIR:AT3G45850.1); Has 34434 Blast hits to 24611 proteins in 1119 species: Archae - 264; Bacteria - 3176; Metazoa - 16741; Fungi - 2792; Plants - 1695; Viruses - 100; Other Eukaryotes - 9666 (source: NCBI BLink).  protein_id AT2G37420.1p  transcript_id AT2G37420.1  protein_id AT2G37420.1p  transcript_id AT2G37420.1  
At2g37430	chr2:015706454	0.0	W/15706454-15706990	AT2G37430.1  CDS  gene_syn F3G5.22, F3G5_22  go_component intracellular|GO:0005622||IEA  go_process response to chitin|GO:0010200|17722694|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein (ZAT11)  note zinc finger (C2H2 type) family protein (ZAT11); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: response to chitin, regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: cotyledon, root, petiole; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT3G53600.1); Has 4550 Blast hits to 3560 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 3995; Fungi - 10; Plants - 464; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).  protein_id AT2G37430.1p  transcript_id AT2G37430.1  protein_id AT2G37430.1p  transcript_id AT2G37430.1  
At2g37435	chr2:015709823	0.0	W/15709823-15709841,15709929-15710089,15710193-15710528	AT2G37435.1  CDS  go_function cysteine-type endopeptidase inhibitor activity|GO:0004869||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product cysteine-type endopeptidase inhibitor  note cysteine-type endopeptidase inhibitor; FUNCTIONS IN: cysteine-type endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I25, cystatin (InterPro:IPR000010), Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63190.1); Has 34 Blast hits to 34 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G37435.1p  transcript_id AT2G37435.1  protein_id AT2G37435.1p  transcript_id AT2G37435.1  
At2g37440	chr2:015719230	0.0	W/15719230-15719253,15719335-15719419,15719522-15719578,15720059-15720143,15720239-15720343,15720434-15720791,15720879-15721063,15721152-15721257,15721360-15721508,15721600-15721885	AT2G37440.1  CDS  gene_syn F3G5.23, F3G5_23  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437||IEA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product endonuclease/exonuclease/phosphatase family protein  note endonuclease/exonuclease/phosphatase family protein; FUNCTIONS IN: hydrolase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell, root; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein (TAIR:AT2G01900.1); Has 1531 Blast hits to 1379 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 598; Fungi - 350; Plants - 367; Viruses - 0; Other Eukaryotes - 216 (source: NCBI BLink).  protein_id AT2G37440.1p  transcript_id AT2G37440.1  protein_id AT2G37440.1p  transcript_id AT2G37440.1  
At2g37440	chr2:015720240	0.0	W/15720240-15720400,15720434-15720550,15720599-15720791,15720879-15721063,15721152-15721257,15721360-15721508,15721600-15721885	AT2G37440.2  CDS  gene_syn F3G5.23, F3G5_23  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437||IEA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product endonuclease/exonuclease/phosphatase family protein  note endonuclease/exonuclease/phosphatase family protein; FUNCTIONS IN: hydrolase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell, root; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein (TAIR:AT2G32010.1); Has 1526 Blast hits to 1373 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 593; Fungi - 349; Plants - 368; Viruses - 0; Other Eukaryotes - 216 (source: NCBI BLink).  protein_id AT2G37440.2p  transcript_id AT2G37440.2  protein_id AT2G37440.2p  transcript_id AT2G37440.2  
At2g37450	chr2:015724670	0.0	C/15724670-15724851,15723570-15723804,15723330-15723491,15723081-15723232,15722828-15722990	AT2G37450.1  CDS  gene_syn F3G5.24, F3G5_24  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  product nodulin MtN21 family protein  note nodulin MtN21 family protein; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT2G37460.1); Has 943 Blast hits to 839 proteins in 125 species: Archae - 10; Bacteria - 183; Metazoa - 0; Fungi - 0; Plants - 707; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT2G37450.1p  transcript_id AT2G37450.1  protein_id AT2G37450.1p  transcript_id AT2G37450.1  
At2g37450	chr2:015724670	0.0	C/15724670-15724851,15723570-15723921,15723330-15723491,15723081-15723232,15722828-15722990	AT2G37450.2  CDS  gene_syn F3G5.24, F3G5_24  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  product nodulin MtN21 family protein  note nodulin MtN21 family protein; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT2G37460.1); Has 1114 Blast hits to 1107 proteins in 199 species: Archae - 19; Bacteria - 329; Metazoa - 4; Fungi - 0; Plants - 633; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).  protein_id AT2G37450.2p  transcript_id AT2G37450.2  protein_id AT2G37450.2p  transcript_id AT2G37450.2  
At2g37460	chr2:015728811	0.0	C/15728811-15729010,15727884-15727946,15727441-15727792,15727209-15727370,15726965-15727116,15726667-15726880	AT2G37460.1  CDS  gene_syn F3G5.25, F3G5_25  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  product nodulin MtN21 family protein  note nodulin MtN21 family protein; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT2G37450.2); Has 1760 Blast hits to 1747 proteins in 387 species: Archae - 25; Bacteria - 750; Metazoa - 3; Fungi - 2; Plants - 636; Viruses - 0; Other Eukaryotes - 344 (source: NCBI BLink).  protein_id AT2G37460.1p  transcript_id AT2G37460.1  protein_id AT2G37460.1p  transcript_id AT2G37460.1  
At2g37470	chr2:015736832	0.0	W/15736832-15737248	AT2G37470.1  CDS  gene_syn F3G5.26, F3G5_26  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product histone H2B, putative  note histone H2B, putative; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H2B, putative (TAIR:AT3G53650.1); Has 2730 Blast hits to 2718 proteins in 288 species: Archae - 0; Bacteria - 0; Metazoa - 1867; Fungi - 172; Plants - 359; Viruses - 0; Other Eukaryotes - 332 (source: NCBI BLink).  protein_id AT2G37470.1p  transcript_id AT2G37470.1  protein_id AT2G37470.1p  transcript_id AT2G37470.1  
At2g37478	chr2:015738139	0.0	W/15738139-15738270	AT2G37478.1  CDS  gene_syn CPuORF52, Conserved peptide upstream open reading frame 52  gene CPuORF52  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF52 represents a conserved upstream opening reading frame relative to major ORF AT2G37480.1  product CPuORF52 (Conserved peptide upstream open reading frame 52)  note Conserved peptide upstream open reading frame 52 (CPuORF52); BEST Arabidopsis thaliana protein match is: CPuORF51 (Conserved peptide upstream open reading frame 51) (TAIR:AT3G53668.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G37478.1p  transcript_id AT2G37478.1  protein_id AT2G37478.1p  transcript_id AT2G37478.1  
At2g37480	chr2:015738645	0.0	W/15738645-15738899,15739250-15739579	AT2G37480.1  CDS  gene_syn F3G5.27, F3G5_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53670.1); Has 159 Blast hits to 159 proteins in 27 species: Archae - 0; Bacteria - 2; Metazoa - 13; Fungi - 8; Plants - 127; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G37480.1p  transcript_id AT2G37480.1  protein_id AT2G37480.1p  transcript_id AT2G37480.1  
At2g37480	chr2:015738645	0.0	W/15738645-15738899,15739253-15739579	AT2G37480.2  CDS  gene_syn F3G5.27, F3G5_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53670.1); Has 165 Blast hits to 165 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 17; Fungi - 11; Plants - 128; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT2G37480.2p  transcript_id AT2G37480.2  protein_id AT2G37480.2p  transcript_id AT2G37480.2  
At2g37500	chr2:015742421	0.0	C/15742421-15742430,15742219-15742338,15742049-15742122,15741919-15741963,15741755-15741805,15741598-15741666,15741464-15741522,15741293-15741362,15741138-15741218,15740951-15741037,15740741-15740863,15740604-15740666,15740451-15740528,15740212-15740357,15740064-15740134,15739904-15739986	AT2G37500.2  CDS  gene_syn F3G5.29, F3G5_29  go_component chloroplast|GO:0009507|18431481|IDA  go_process arginine biosynthetic process|GO:0006526||IEA  go_function glutamate N-acetyltransferase activity|GO:0004358||IEA  go_process arginine biosynthetic process|GO:0006526||ISS  go_function glutamate N-acetyltransferase activity|GO:0004358||ISS  product arginine biosynthesis protein ArgJ family  note arginine biosynthesis protein ArgJ family; FUNCTIONS IN: glutamate N-acetyltransferase activity; INVOLVED IN: arginine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arginine biosynthesis protein ArgJ (InterPro:IPR002813), Peptidase S58 DmpA/arginine biosynthesis protein ArgJ (InterPro:IPR016117); Has 4134 Blast hits to 4130 proteins in 853 species: Archae - 58; Bacteria - 1534; Metazoa - 0; Fungi - 95; Plants - 27; Viruses - 0; Other Eukaryotes - 2420 (source: NCBI BLink).  protein_id AT2G37500.2p  transcript_id AT2G37500.2  protein_id AT2G37500.2p  transcript_id AT2G37500.2  
At2g37500	chr2:015742627	0.0	C/15742627-15742689,15742421-15742540,15742219-15742342,15742049-15742122,15741919-15741963,15741755-15741805,15741598-15741666,15741464-15741522,15741293-15741362,15741138-15741218,15740951-15741037,15740741-15740863,15740604-15740666,15740451-15740528,15740212-15740357,15740064-15740134,15739904-15739986	AT2G37500.1  CDS  gene_syn F3G5.29, F3G5_29  go_component chloroplast|GO:0009507|18431481|IDA  go_process arginine biosynthetic process|GO:0006526||IEA  go_function glutamate N-acetyltransferase activity|GO:0004358||IEA  go_process arginine biosynthetic process|GO:0006526||ISS  go_function glutamate N-acetyltransferase activity|GO:0004358||ISS  product arginine biosynthesis protein ArgJ family  note arginine biosynthesis protein ArgJ family; FUNCTIONS IN: glutamate N-acetyltransferase activity; INVOLVED IN: arginine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arginine biosynthesis protein ArgJ (InterPro:IPR002813), Peptidase S58 DmpA/arginine biosynthesis protein ArgJ (InterPro:IPR016117); Has 4130 Blast hits to 4126 proteins in 850 species: Archae - 58; Bacteria - 1530; Metazoa - 0; Fungi - 93; Plants - 27; Viruses - 0; Other Eukaryotes - 2422 (source: NCBI BLink).  protein_id AT2G37500.1p  transcript_id AT2G37500.1  protein_id AT2G37500.1p  transcript_id AT2G37500.1  
At2g37510	chr2:015744387	0.0	C/15744387-15744504,15743429-15743497,15743112-15743353	AT2G37510.1  CDS  gene_syn F3G5.30, F3G5_30  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA-binding protein, putative  note RNA-binding protein, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT5G54580.1); Has 15344 Blast hits to 11875 proteins in 560 species: Archae - 10; Bacteria - 833; Metazoa - 8796; Fungi - 1697; Plants - 2692; Viruses - 0; Other Eukaryotes - 1316 (source: NCBI BLink).  protein_id AT2G37510.1p  transcript_id AT2G37510.1  protein_id AT2G37510.1p  transcript_id AT2G37510.1  
At2g37520	chr2:015749022	0.0	C/15749022-15749615,15748872-15748940,15748567-15748776,15748420-15748483,15748101-15748287,15747914-15747979,15747724-15747805,15747575-15747634,15747413-15747465,15747173-15747339,15746789-15746972,15746574-15746631,15746426-15746482,15746096-15746341,15745867-15745928,15745723-15745779,15745534-15745627,15745307-15745447,15745033-15745146	AT2G37520.1  CDS  gene_syn F13M22.2, F13M22_2  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product PHD finger family protein  note PHD finger family protein; FUNCTIONS IN: protein binding, DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: PHD finger transcription factor, putative (TAIR:AT3G53680.1); Has 2686 Blast hits to 2189 proteins in 145 species: Archae - 0; Bacteria - 0; Metazoa - 1957; Fungi - 205; Plants - 372; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).  protein_id AT2G37520.1p  transcript_id AT2G37520.1  protein_id AT2G37520.1p  transcript_id AT2G37520.1  
At2g37530	chr2:015751060	0.0	W/15751060-15751428	AT2G37530.1  CDS  gene_syn F13M22.3, F13M22_3  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07795.1); Has 25 Blast hits to 25 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G37530.1p  transcript_id AT2G37530.1  protein_id AT2G37530.1p  transcript_id AT2G37530.1  
At2g37540	chr2:015753703	0.0	C/15753703-15753820,15752935-15753166,15752758-15752837,15752428-15752581,15752257-15752335,15752088-15752172,15751953-15751999,15751695-15751865	AT2G37540.1  CDS  gene_syn F13M22.4, F13M22_4  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT5G02540.1); Has 44676 Blast hits to 44612 proteins in 1889 species: Archae - 289; Bacteria - 25653; Metazoa - 3875; Fungi - 2761; Plants - 1274; Viruses - 0; Other Eukaryotes - 10824 (source: NCBI BLink).  protein_id AT2G37540.1p  transcript_id AT2G37540.1  protein_id AT2G37540.1p  transcript_id AT2G37540.1  
At2g37550	chr2:015756671	0.0	C/15756671-15757456,15756485-15756562,15755544-15756050	AT2G37550.1  CDS  gene_syn AGD7, ASP1, F13M22.5, F13M22_5, pde1 suppressor 1  gene AGD7  function A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.  go_process regulation of ARF GTPase activity|GO:0032312||IEA  go_function ARF GTPase activator activity|GO:0008060||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component nucleus|GO:0005634||ISS  go_component cytosol|GO:0005829|18433157|IDA  go_function DNA binding|GO:0003677||ISS  product AGD7; ARF GTPase activator/ DNA binding / zinc ion binding  note AGD7; FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: AGD6; ARF GTPase activator/ DNA binding / zinc ion binding (TAIR:AT3G53710.2); Has 2908 Blast hits to 2811 proteins in 180 species: Archae - 0; Bacteria - 26; Metazoa - 1636; Fungi - 450; Plants - 298; Viruses - 0; Other Eukaryotes - 498 (source: NCBI BLink).  protein_id AT2G37550.1p  transcript_id AT2G37550.1  protein_id AT2G37550.1p  transcript_id AT2G37550.1  
At2g37550	chr2:015756671	0.0	C/15756671-15757456,15756485-15756562,15755544-15756050	AT2G37550.2  CDS  gene_syn AGD7, ASP1, F13M22.5, F13M22_5, pde1 suppressor 1  gene AGD7  function A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.  go_process regulation of ARF GTPase activity|GO:0032312||IEA  go_function ARF GTPase activator activity|GO:0008060||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component nucleus|GO:0005634||ISS  go_component cytosol|GO:0005829|18433157|IDA  go_function DNA binding|GO:0003677||ISS  product AGD7; ARF GTPase activator/ DNA binding / zinc ion binding  note pde1 suppressor 1 (ASP1); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: AGD6; ARF GTPase activator/ DNA binding / zinc ion binding (TAIR:AT3G53710.2); Has 2908 Blast hits to 2811 proteins in 180 species: Archae - 0; Bacteria - 26; Metazoa - 1636; Fungi - 450; Plants - 298; Viruses - 0; Other Eukaryotes - 498 (source: NCBI BLink).  protein_id AT2G37550.2p  transcript_id AT2G37550.2  protein_id AT2G37550.2p  transcript_id AT2G37550.2  
At2g37555	chr2:015756722	0.0	W/15756722-15758279	AT2G37555.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G37550  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G37555.1  
At2g37560	chr2:015759568	0.0	W/15759568-15759699,15759792-15759898,15759991-15760123,15760245-15760536,15760689-15761116	AT2G37560.1  CDS  gene_syn ATORC2, F13M22.6, F13M22_6, ORC2, ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2  gene ORC2  function Origin Recognition Complex subunit 2. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts strongly with all ORC subunits.  go_component origin recognition complex|GO:0000808|16179646|ISS  go_process DNA replication|GO:0006260|7502077|ISS  go_function DNA replication origin binding|GO:0003688|16179646|ISS  go_function protein binding|GO:0005515|16179646|IPI  product ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2); DNA replication origin binding / protein binding  note ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2 (ORC2); FUNCTIONS IN: protein binding, DNA replication origin binding; INVOLVED IN: DNA replication; LOCATED IN: origin recognition complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Origin recognition complex subunit 2 (InterPro:IPR007220); Has 268 Blast hits to 266 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 89; Plants - 26; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT2G37560.1p  transcript_id AT2G37560.1  protein_id AT2G37560.1p  transcript_id AT2G37560.1  
At2g37560	chr2:015759568	0.0	W/15759568-15759699,15759792-15759898,15759991-15760123,15760299-15760536,15760689-15761116	AT2G37560.2  CDS  gene_syn ATORC2, F13M22.6, F13M22_6, ORC2, ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2  gene ORC2  function Origin Recognition Complex subunit 2. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts strongly with all ORC subunits.  go_component origin recognition complex|GO:0000808|16179646|ISS  go_process DNA replication|GO:0006260|7502077|ISS  go_function DNA replication origin binding|GO:0003688|16179646|ISS  go_function protein binding|GO:0005515|16179646|IPI  product ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2); DNA replication origin binding / protein binding  note ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2 (ORC2); FUNCTIONS IN: protein binding, DNA replication origin binding; INVOLVED IN: DNA replication; LOCATED IN: origin recognition complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Origin recognition complex subunit 2 (InterPro:IPR007220); Has 268 Blast hits to 266 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 89; Plants - 26; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT2G37560.2p  transcript_id AT2G37560.2  protein_id AT2G37560.2p  transcript_id AT2G37560.2  
At2g37570	chr2:015761466	0.0	C/15761466-15762521	AT2G37570.2  CDS  gene_syn F13M22.7, F13M22_7, SLT1, SLT1 PROTEIN, sodium- and lithium-tolerant 1  gene SLT1  function encodes a protein that can complement the salt-sensitive phenotype of a calcineurin (CaN)-deficient yeast mutant. This gene occurs in a single-copy and is 75% identical to tobacco SLT1 gene.  go_component cellular_component|GO:0005575||ND  go_process hyperosmotic salinity response|GO:0042538|11352467|IMP  go_function molecular_function|GO:0003674||ND  product SLT1 (sodium- and lithium-tolerant 1)  note sodium- and lithium-tolerant 1 (SLT1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: hyperosmotic salinity response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G02480.1); Has 55 Blast hits to 55 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G37570.2p  transcript_id AT2G37570.2  protein_id AT2G37570.2p  transcript_id AT2G37570.2  
At2g37570	chr2:015761466	0.0	C/15761466-15762950	AT2G37570.1  CDS  gene_syn F13M22.7, F13M22_7, SLT1, SLT1 PROTEIN, sodium- and lithium-tolerant 1  gene SLT1  function encodes a protein that can complement the salt-sensitive phenotype of a calcineurin (CaN)-deficient yeast mutant. This gene occurs in a single-copy and is 75% identical to tobacco SLT1 gene.  go_component cellular_component|GO:0005575||ND  go_process hyperosmotic salinity response|GO:0042538|11352467|IMP  go_function molecular_function|GO:0003674||ND  product SLT1 (sodium- and lithium-tolerant 1)  note sodium- and lithium-tolerant 1 (SLT1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: hyperosmotic salinity response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G02480.1); Has 56 Blast hits to 56 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G37570.1p  transcript_id AT2G37570.1  protein_id AT2G37570.1p  transcript_id AT2G37570.1  
At2g37580	chr2:015764745	0.0	W/15764745-15765452	AT2G37580.1  CDS  gene_syn F13M22.1  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, transferase activity, transferring glycosyl groups, zinc ion binding; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G33565.1); Has 5423 Blast hits to 5408 proteins in 219 species: Archae - 0; Bacteria - 0; Metazoa - 1623; Fungi - 402; Plants - 2465; Viruses - 61; Other Eukaryotes - 872 (source: NCBI BLink).  protein_id AT2G37580.1p  transcript_id AT2G37580.1  protein_id AT2G37580.1p  transcript_id AT2G37580.1  
At2g37585	chr2:015765864	0.0	W/15765864-15766368,15766865-15766940,15767052-15767167,15767265-15767722	AT2G37585.1  CDS  go_component membrane|GO:0016020||IEA  go_function acetylglucosaminyltransferase activity|GO:0008375||IEA  go_component membrane|GO:0016020||ISS  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function acetylglucosaminyltransferase activity|GO:0008375||ISS  product glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein  note glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein; FUNCTIONS IN: acetylglucosaminyltransferase activity; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 14 (InterPro:IPR003406); BEST Arabidopsis thaliana protein match is: glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein (TAIR:AT5G39990.1); Has 608 Blast hits to 607 proteins in 70 species: Archae - 0; Bacteria - 8; Metazoa - 401; Fungi - 0; Plants - 188; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT2G37585.1p  transcript_id AT2G37585.1  protein_id AT2G37585.1p  transcript_id AT2G37585.1  
At2g37590	chr2:015769292	0.0	W/15769292-15769342,15769556-15770497	AT2G37590.1  CDS  gene_syn F13M22.9, F13M22_9  go_component nucleus|GO:0005634|16581911|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product Dof-type zinc finger domain-containing protein  note Dof-type zinc finger domain-containing protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT5G02460.1); Has 1173 Blast hits to 967 proteins in 85 species: Archae - 4; Bacteria - 18; Metazoa - 289; Fungi - 10; Plants - 615; Viruses - 0; Other Eukaryotes - 237 (source: NCBI BLink).  protein_id AT2G37590.1p  transcript_id AT2G37590.1  protein_id AT2G37590.1p  transcript_id AT2G37590.1  
At2g37600	chr2:015775102	0.0	C/15775102-15775203,15774593-15774792,15774410-15774449	AT2G37600.1  CDS  gene_syn F13M22.10, F13M22_10  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L36 (RPL36A)  note 60S ribosomal protein L36 (RPL36A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, ribosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L36e (InterPro:IPR000509); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L36 (RPL36B) (TAIR:AT3G53740.4); Has 585 Blast hits to 585 proteins in 195 species: Archae - 0; Bacteria - 0; Metazoa - 295; Fungi - 94; Plants - 95; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT2G37600.1p  transcript_id AT2G37600.1  protein_id AT2G37600.1p  transcript_id AT2G37600.1  
At2g37600	chr2:015775102	0.0	C/15775102-15775203,15774593-15774792,15774410-15774449	AT2G37600.2  CDS  gene_syn F13M22.10, F13M22_10  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L36 (RPL36A)  note 60S ribosomal protein L36 (RPL36A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, ribosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L36e (InterPro:IPR000509); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L36 (RPL36B) (TAIR:AT3G53740.4); Has 585 Blast hits to 585 proteins in 195 species: Archae - 0; Bacteria - 0; Metazoa - 295; Fungi - 94; Plants - 95; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT2G37600.2p  transcript_id AT2G37600.2  protein_id AT2G37600.2p  transcript_id AT2G37600.2  
At2g37610	chr2:015777564	0.0	C/15777564-15777673,15776869-15777244	AT2G37610.1  CDS  gene_syn F13M22.11, F13M22_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G37610.1p  transcript_id AT2G37610.1  protein_id AT2G37610.1p  transcript_id AT2G37610.1  
At2g37620	chr2:015779761	0.0	W/15779761-15779820,15779957-15780350,15780451-15781064,15781176-15781241	AT2G37620.1  CDS  gene_syn AAc1, ACT1, ACTIN 1, ARABIDOPSIS ACTIN 1, F13M22.12, F13M22_12  gene ACT1  function Member of the actin gene family. Expressed in mature pollen.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component cytoskeleton|GO:0005856||TAS  go_process cytoskeleton organization|GO:0007010||TAS  go_process developmental growth|GO:0048589|11809837|IMP  go_process root hair elongation|GO:0048767|12481103|IMP  go_function structural constituent of cytoskeleton|GO:0005200|8597657|ISS  go_function structural constituent of cytoskeleton|GO:0005200||ISS  product ACT1 (ACTIN 1); structural constituent of cytoskeleton  note ACTIN 1 (ACT1); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: root hair elongation, cytoskeleton organization, developmental growth; LOCATED IN: cell wall, cytoskeleton, plasma membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: ACT3 (actin 3); structural constituent of cytoskeleton (TAIR:AT3G53750.1); Has 11138 Blast hits to 10819 proteins in 2293 species: Archae - 8; Bacteria - 4; Metazoa - 4943; Fungi - 2962; Plants - 1106; Viruses - 2; Other Eukaryotes - 2113 (source: NCBI BLink).  protein_id AT2G37620.1p  transcript_id AT2G37620.1  protein_id AT2G37620.1p  transcript_id AT2G37620.1  
At2g37620	chr2:015779761	0.0	W/15779761-15779820,15779957-15780350,15780451-15781064,15781176-15781241	AT2G37620.2  CDS  gene_syn AAc1, ACT1, ACTIN 1, ARABIDOPSIS ACTIN 1, F13M22.12, F13M22_12  gene ACT1  function Member of the actin gene family. Expressed in mature pollen.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component cytoskeleton|GO:0005856||TAS  go_process cytoskeleton organization|GO:0007010||TAS  go_process developmental growth|GO:0048589|11809837|IMP  go_process root hair elongation|GO:0048767|12481103|IMP  go_function structural constituent of cytoskeleton|GO:0005200|8597657|ISS  go_function structural constituent of cytoskeleton|GO:0005200||ISS  product ACT1 (ACTIN 1); structural constituent of cytoskeleton  note ACTIN 1 (ACT1); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: root hair elongation, cytoskeleton organization, developmental growth; LOCATED IN: cell wall, cytoskeleton, plasma membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: ACT3 (actin 3); structural constituent of cytoskeleton (TAIR:AT3G53750.1); Has 11138 Blast hits to 10819 proteins in 2293 species: Archae - 8; Bacteria - 4; Metazoa - 4943; Fungi - 2962; Plants - 1106; Viruses - 2; Other Eukaryotes - 2113 (source: NCBI BLink).  protein_id AT2G37620.2p  transcript_id AT2G37620.2  protein_id AT2G37620.2p  transcript_id AT2G37620.2  
At2g37630	chr2:015781798	0.0	C/15781798-15782901	AT2G37630.1  CDS  gene_syn ARABIDOPSIS PHANTASTICA-LIKE 1, AS1, ASYMMETRIC LEAVES 1, ATMYB91, ATPHAN, F13M22.13, F13M22_13, MYB DOMAIN PROTEIN 91, MYB91  gene AS1  function Encodes a MYB-domain protein involved in specification of the leaf proximodistal axis. Mutation results in lobed and dissected leaves with a characteristic asymmetry. Homologous to the Antirrhinum PHANTASTICA (PHAN) and maize ROUGH SHEATH2 (RS2) genes Asymmetric placement of auxin response at the distal leaf tip precedes visible asymmetric leaf growth. Acts alongside AXR1 to exclude BP expression in leaves and with PIN1 to repress BP and promote lateral organ growth. Interacts physically with AS2 to form a complex that binds to the BP promoter and silences BP.  go_component nucleus|GO:0005634|17293570|IDA  go_process asymmetric cell division|GO:0008356|15608337|IMP  go_process response to virus|GO:0009615|18794352|IMP  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process polarity specification of adaxial/abaxial axis|GO:0009944|17293570|IMP  go_process proximal/distal axis specification|GO:0009946|11882937|IMP  go_process leaf morphogenesis|GO:0009965|11882937|IMP  go_process leaf formation|GO:0010338|16971475|IGI  go_process negative regulation of transcription|GO:0016481|18203921|IDA  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677|18203921|IPI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11882937|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function protein homodimerization activity|GO:0042803|16243907|IPI  product AS1 (ASYMMETRIC LEAVES 1); DNA binding / protein homodimerization/ transcription factor  note ASYMMETRIC LEAVES 1 (AS1); FUNCTIONS IN: transcription factor activity, protein homodimerization activity, DNA binding; INVOLVED IN: in 13 processes; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB59 (MYB DOMAIN PROTEIN 59); DNA binding / transcription factor (TAIR:AT5G59780.3); Has 6106 Blast hits to 5516 proteins in 369 species: Archae - 0; Bacteria - 8; Metazoa - 769; Fungi - 316; Plants - 3450; Viruses - 6; Other Eukaryotes - 1557 (source: NCBI BLink).  protein_id AT2G37630.1p  transcript_id AT2G37630.1  protein_id AT2G37630.1p  transcript_id AT2G37630.1  
At2g37640	chr2:015789653	0.0	C/15789653-15789812,15789174-15789492,15788077-15788386	AT2G37640.1  CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN A3, ATEXP3, ATEXPA3, ATHEXP ALPHA 1.9, EXP3, EXPANSIN 3, F13M22.14, F13M22_14  gene EXP3  function member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_process syncytium formation|GO:0006949|16942607|IEP  go_process response to gibberellin stimulus|GO:0009739|17449805|TAS  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828||ISS  go_process plant-type cell wall modification during multidimensional cell growth|GO:0009831||ISS  go_process response to red light|GO:0010114|17449805|IEP  product EXP3  note EXP3; INVOLVED IN: in 6 processes; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6) (TAIR:AT2G28950.1); Has 1424 Blast hits to 1423 proteins in 123 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 26; Plants - 1372; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT2G37640.1p  transcript_id AT2G37640.1  protein_id AT2G37640.1p  transcript_id AT2G37640.1  
At2g37650	chr2:015792623	0.0	W/15792623-15794779	AT2G37650.1  CDS  gene_syn F13M22.15, F13M22_15  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product scarecrow-like transcription factor 9 (SCL9)  note scarecrow-like transcription factor 9 (SCL9); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: SCL14 (SCARECROW-LIKE 14); transcription factor (TAIR:AT1G07530.1); Has 1298 Blast hits to 1264 proteins in 176 species: Archae - 0; Bacteria - 4; Metazoa - 3; Fungi - 0; Plants - 1290; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G37650.1p  transcript_id AT2G37650.1  protein_id AT2G37650.1p  transcript_id AT2G37650.1  
At2g37660	chr2:015796713	0.0	C/15796713-15796977,15796361-15796632,15796240-15796276,15796065-15796162,15795922-15795983,15795716-15795839,15795481-15795600	AT2G37660.1  CDS  gene_syn F13M22.16, F13M22_16  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  product binding / catalytic/ coenzyme binding  note binding / catalytic/ coenzyme binding; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: defense response to bacterium; LOCATED IN: thylakoid, apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: binding / catalytic/ coenzyme binding (TAIR:AT5G02240.1); Has 1711 Blast hits to 1685 proteins in 445 species: Archae - 20; Bacteria - 1147; Metazoa - 3; Fungi - 23; Plants - 245; Viruses - 0; Other Eukaryotes - 273 (source: NCBI BLink).  protein_id AT2G37660.1p  transcript_id AT2G37660.1  protein_id AT2G37660.1p  transcript_id AT2G37660.1  
At2g37670	chr2:015798892	0.0	C/15798892-15800536,15798645-15798802,15798479-15798530,15798305-15798387,15798130-15798223,15797384-15798063	AT2G37670.1  CDS  gene_syn F13M22.17, F13M22_17  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_process signal transduction|GO:0007165||ISS  go_function signal transducer activity|GO:0004871||ISS  product WD-40 repeat family protein  note WD-40 repeat family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: signal transduction; LOCATED IN: heterotrimeric G-protein complex; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein (TAIR:AT5G02430.1); Has 28731 Blast hits to 17401 proteins in 540 species: Archae - 42; Bacteria - 3833; Metazoa - 12960; Fungi - 5529; Plants - 2561; Viruses - 3; Other Eukaryotes - 3803 (source: NCBI BLink).  protein_id AT2G37670.1p  transcript_id AT2G37670.1  protein_id AT2G37670.1p  transcript_id AT2G37670.1  
At2g37678	chr2:015802644	0.0	C/15802644-15802696,15801847-15802322,15801689-15801768	AT2G37678.1  CDS  gene_syn FAR-RED ELONGATED HYPOCOTYL 1, FHY1, FRY1, PAT3, PHYTOCHROME A SIGNAL TRANSDUCTION 3  gene FHY1  function Positive regulator of photomorphogenesis in far-red light. Most abundant in young seedlings in the dark. Downregulated in the light and older as plants develop. Localized in the nucleus and the cytoplasm. Nuclear localization strongest in the dark. Degraded through the 26S proteasome. Regulated by PHYA. It is specifically required for the light-regulated nuclear accumulation of phyA but not phyB.  go_component nucleus|GO:0005634|11711433|TAS  go_component nucleus|GO:0005634|16244150|IDA  go_component cytoplasm|GO:0005737|16244150|IDA  go_component nuclear body|GO:0016604|16332538|IDA  go_process response to red or far red light|GO:0009639|11711433|IMP  go_process photomorphogenesis|GO:0009640||IMP  go_process response to far red light|GO:0010218|16861711|IGI  go_process maintenance of protein location in nucleus|GO:0051457|16861711|IMP  go_function transcription regulator activity|GO:0030528||IDA  product FHY1 (FAR-RED ELONGATED HYPOCOTYL 1); transcription regulator  note FAR-RED ELONGATED HYPOCOTYL 1 (FHY1); FUNCTIONS IN: transcription regulator activity; INVOLVED IN: maintenance of protein location in nucleus, response to red or far red light, response to far red light, photomorphogenesis; LOCATED IN: nuclear body, nucleus, cytoplasm; EXPRESSED IN: hypocotyl; BEST Arabidopsis thaliana protein match is: FHL (FAR-RED-ELONGATED HYPOCOTYL1-LIKE); protein binding (TAIR:AT5G02200.2); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G37678.1p  transcript_id AT2G37678.1  protein_id AT2G37678.1p  transcript_id AT2G37678.1  
At2g37680	chr2:015805470	0.0	C/15805470-15805515,15805312-15805370,15804318-15804461,15804152-15804225,15804012-15804066,15803877-15803939,15803653-15803780,15803500-15803578	AT2G37680.1  CDS  gene_syn F13M22.18, F13M22_18  product unknown protein  note CONTAINS InterPro DOMAIN/s: Vacuolar import and degradation protein Vid24 (InterPro:IPR018618); Has 214 Blast hits to 214 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 57; Fungi - 124; Plants - 31; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G37680.1p  transcript_id AT2G37680.1  protein_id AT2G37680.1p  transcript_id AT2G37680.1  
At2g37690	chr2:015806111	0.0	W/15806111-15806340,15806748-15806969,15807065-15807176,15807271-15807333,15807438-15807576,15807874-15807929,15808006-15808079,15808181-15808328,15808404-15808577,15808691-15808778,15808882-15808992,15809191-15809288,15809525-15809642,15809722-15809816,15809936-15810042,15810147-15810240	AT2G37690.1  CDS  gene_syn F13M22.19, F13M22_19  go_component chloroplast|GO:0009507|18431481|IDA  go_function catalytic activity|GO:0003824||IEA  go_function phosphoribosylaminoimidazole carboxylase activity|GO:0004638||IEA  go_function ATP binding|GO:0005524||IEA  go_process  de novo  IMP biosynthetic process|GO:0006189||ISS  go_process pollen development|GO:0009555|19237690|IMP  go_function phosphoribosylaminoimidazole carboxylase activity|GO:0004638||ISS  product phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative  note phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative; FUNCTIONS IN: phosphoribosylaminoimidazole carboxylase activity, catalytic activity, ATP binding; INVOLVED IN:  de novo  IMP biosynthetic process, pollen development; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Phosphoribosylaminoimidazole carboxylase (InterPro:IPR016301), PreATP-grasp-like fold (InterPro:IPR016185), ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type (InterPro:IPR003135), 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase (InterPro:IPR000031), Phosphoribosylaminoimidazole carboxylase, ATPase subunit (InterPro:IPR005875), ATP-grasp fold (InterPro:IPR011761), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), Rudiment single hybrid motif (InterPro:IPR011054), Pre-ATP-grasp fold (InterPro:IPR013817); BEST Arabidopsis thaliana protein match is: phosphoribosylaminoimidazole carboxylase family protein / AIR carboxylase family protein (TAIR:AT2G05140.1); Has 11552 Blast hits to 11539 proteins in 1440 species: Archae - 286; Bacteria - 6042; Metazoa - 132; Fungi - 152; Plants - 33; Viruses - 0; Other Eukaryotes - 4907 (source: NCBI BLink).  protein_id AT2G37690.1p  transcript_id AT2G37690.1  protein_id AT2G37690.1p  transcript_id AT2G37690.1  
At2g37700	chr2:015814117	0.0	C/15814117-15814176,15813554-15813998,15812851-15813070,15812207-15812585,15812014-15812121,15811641-15811910	AT2G37700.2  CDS  gene_syn F13M22.20, F13M22_20  go_component endoplasmic reticulum|GO:0005783||IEA  go_process fatty acid biosynthetic process|GO:0006633||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function catalytic activity|GO:0003824||ISS  product catalytic/ iron ion binding / oxidoreductase  note catalytic/ iron ion binding / oxidoreductase; FUNCTIONS IN: oxidoreductase activity, iron ion binding, catalytic activity; INVOLVED IN: oxidation reduction, fatty acid biosynthetic process; LOCATED IN: endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: CER1 protein, putative (TAIR:AT1G02190.1); Has 1933 Blast hits to 1931 proteins in 373 species: Archae - 0; Bacteria - 565; Metazoa - 318; Fungi - 277; Plants - 300; Viruses - 5; Other Eukaryotes - 468 (source: NCBI BLink).  protein_id AT2G37700.2p  transcript_id AT2G37700.2  protein_id AT2G37700.2p  transcript_id AT2G37700.2  
At2g37700	chr2:015814117	0.0	C/15814117-15814176,15813554-15813998,15812851-15813070,15812207-15812585,15812014-15812121,15811710-15811910,15811268-15811339,15810990-15811163,15810581-15810763	AT2G37700.1  CDS  gene_syn F13M22.20, F13M22_20  go_component endoplasmic reticulum|GO:0005783||IEA  go_process fatty acid biosynthetic process|GO:0006633||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function catalytic activity|GO:0003824||ISS  product catalytic/ iron ion binding / oxidoreductase  note catalytic/ iron ion binding / oxidoreductase; FUNCTIONS IN: oxidoreductase activity, iron ion binding, catalytic activity; INVOLVED IN: oxidation reduction, fatty acid biosynthetic process; LOCATED IN: endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: CER1 protein, putative (TAIR:AT1G02190.1); Has 1916 Blast hits to 1914 proteins in 370 species: Archae - 0; Bacteria - 557; Metazoa - 316; Fungi - 267; Plants - 307; Viruses - 5; Other Eukaryotes - 464 (source: NCBI BLink).  protein_id AT2G37700.1p  transcript_id AT2G37700.1  protein_id AT2G37700.1p  transcript_id AT2G37700.1  
At2g37710	chr2:015814934	0.0	C/15814934-15816961	AT2G37710.1  CDS  gene_syn F13M22.21, F13M22_21, RLK, receptor lectin kinase  gene RLK  function Induced in response to Salicylic acid.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to salicylic acid stimulus|GO:0009751|16307367|IEP  go_function kinase activity|GO:0016301||ISS  product RLK (receptor lectin kinase); kinase  note receptor lectin kinase (RLK); FUNCTIONS IN: kinase activity; INVOLVED IN: response to salicylic acid stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin protein kinase, putative (TAIR:AT3G53810.1); Has 81222 Blast hits to 80124 proteins in 3230 species: Archae - 43; Bacteria - 7242; Metazoa - 35232; Fungi - 6159; Plants - 19177; Viruses - 325; Other Eukaryotes - 13044 (source: NCBI BLink).  protein_id AT2G37710.1p  transcript_id AT2G37710.1  protein_id AT2G37710.1p  transcript_id AT2G37710.1  
At2g37720	chr2:015818082	0.0	W/15818082-15818140,15818445-15818500,15819886-15821219	AT2G37720.1  CDS  gene_syn F13M22.22, F13M22_22  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: leaf; EXPRESSED DURING: LP.02 two leaves visible; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64020.1); Has 699 Blast hits to 686 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 699; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G37720.1p  transcript_id AT2G37720.1  protein_id AT2G37720.1p  transcript_id AT2G37720.1  
At2g37730	chr2:015824045	0.0	C/15824045-15824538,15823489-15823879,15822538-15823086,15822186-15822350	AT2G37730.1  CDS  gene_syn F13M22.23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product fringe-related protein  note fringe-related protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: L mature pollen stage, 4 anthesis, F mature embryo stage, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: fringe-related protein (TAIR:AT3G11420.1); Has 311 Blast hits to 307 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 70; Fungi - 100; Plants - 134; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT2G37730.1p  transcript_id AT2G37730.1  protein_id AT2G37730.1p  transcript_id AT2G37730.1  
At2g37740	chr2:015827706	0.0	C/15827706-15828620	AT2G37740.1  CDS  gene_syn ATZFP10, T8P21.34, ZFP10, ZINC-FINGER PROTEIN 10  gene ZFP10  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product ZFP10 (ZINC-FINGER PROTEIN 10); nucleic acid binding / transcription factor/ zinc ion binding  note ZINC-FINGER PROTEIN 10 (ZFP10); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: RBE (RABBIT EARS); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT5G06070.1); Has 371 Blast hits to 369 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 2; Plants - 362; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G37740.1p  transcript_id AT2G37740.1  protein_id AT2G37740.1p  transcript_id AT2G37740.1  
At2g37750	chr2:015831017	0.0	W/15831017-15831265	AT2G37750.1  CDS  gene_syn T8P21.37  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G37750.1p  transcript_id AT2G37750.1  protein_id AT2G37750.1p  transcript_id AT2G37750.1  
At2g37760	chr2:015831995	0.0	W/15831995-15832102,15832191-15832241,15832541-15832617,15832703-15832790,15832867-15833142,15833234-15833482,15833656-15833742	AT2G37760.1  CDS  gene_syn T8P21.6  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function oxidoreductase activity|GO:0016491||IEA  product aldo/keto reductase family protein  note aldo/keto reductase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Aldo/keto reductase, conserved site (InterPro:IPR018170); BEST Arabidopsis thaliana protein match is: aldo/keto reductase family protein (TAIR:AT2G37790.1); Has 15140 Blast hits to 15119 proteins in 1396 species: Archae - 191; Bacteria - 8564; Metazoa - 1885; Fungi - 1157; Plants - 688; Viruses - 0; Other Eukaryotes - 2655 (source: NCBI BLink).  protein_id AT2G37760.1p  transcript_id AT2G37760.1  protein_id AT2G37760.1p  transcript_id AT2G37760.1  
At2g37760	chr2:015831995	0.0	W/15831995-15832102,15832191-15832241,15832541-15832617,15832703-15832790,15832867-15833142,15833234-15833482,15833656-15833742	AT2G37760.2  CDS  gene_syn T8P21.6  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function oxidoreductase activity|GO:0016491||IEA  product aldo/keto reductase family protein  note aldo/keto reductase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Aldo/keto reductase, conserved site (InterPro:IPR018170); BEST Arabidopsis thaliana protein match is: aldo/keto reductase family protein (TAIR:AT2G37790.1); Has 15140 Blast hits to 15119 proteins in 1396 species: Archae - 191; Bacteria - 8564; Metazoa - 1885; Fungi - 1157; Plants - 688; Viruses - 0; Other Eukaryotes - 2655 (source: NCBI BLink).  protein_id AT2G37760.2p  transcript_id AT2G37760.2  protein_id AT2G37760.2p  transcript_id AT2G37760.2  
At2g37760	chr2:015831995	0.0	W/15831995-15832102,15832191-15832241,15832541-15832617,15832703-15832790,15832867-15833142,15833234-15833486,15833656-15833678	AT2G37760.5  CDS  gene_syn T8P21.6  go_function oxidoreductase activity|GO:0016491||IEA  product aldo/keto reductase family protein  note aldo/keto reductase family protein; FUNCTIONS IN: oxidoreductase activity; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Aldo/keto reductase, conserved site (InterPro:IPR018170); BEST Arabidopsis thaliana protein match is: aldo/keto reductase family protein (TAIR:AT2G37770.2); Has 15173 Blast hits to 15151 proteins in 1394 species: Archae - 191; Bacteria - 8582; Metazoa - 1892; Fungi - 1167; Plants - 689; Viruses - 0; Other Eukaryotes - 2652 (source: NCBI BLink).  protein_id AT2G37760.5p  transcript_id AT2G37760.5  protein_id AT2G37760.5p  transcript_id AT2G37760.5  
At2g37760	chr2:015831995	0.0	W/15831995-15832102,15832191-15832241,15832541-15832617,15832703-15832790,15832867-15833142,15833234-15833486,15833659-15833678	AT2G37760.3  CDS  gene_syn T8P21.6  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function oxidoreductase activity|GO:0016491||IEA  product aldo/keto reductase family protein  note aldo/keto reductase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Aldo/keto reductase, conserved site (InterPro:IPR018170); BEST Arabidopsis thaliana protein match is: aldo/keto reductase family protein (TAIR:AT2G37790.1); Has 15135 Blast hits to 15114 proteins in 1394 species: Archae - 189; Bacteria - 8564; Metazoa - 1885; Fungi - 1157; Plants - 687; Viruses - 0; Other Eukaryotes - 2653 (source: NCBI BLink).  protein_id AT2G37760.3p  transcript_id AT2G37760.3  protein_id AT2G37760.3p  transcript_id AT2G37760.3  
At2g37760	chr2:015831995	0.0	W/15831995-15832102,15832191-15832241,15832541-15832617,15832703-15832790,15832867-15833142,15833234-15833486,15833659-15833678	AT2G37760.4  CDS  gene_syn T8P21.6  go_function oxidoreductase activity|GO:0016491||IEA  product aldo/keto reductase family protein  note aldo/keto reductase family protein; FUNCTIONS IN: oxidoreductase activity; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Aldo/keto reductase, conserved site (InterPro:IPR018170); BEST Arabidopsis thaliana protein match is: aldo/keto reductase family protein (TAIR:AT2G37790.1); Has 15135 Blast hits to 15114 proteins in 1394 species: Archae - 189; Bacteria - 8564; Metazoa - 1885; Fungi - 1157; Plants - 687; Viruses - 0; Other Eukaryotes - 2653 (source: NCBI BLink).  protein_id AT2G37760.4p  transcript_id AT2G37760.4  protein_id AT2G37760.4p  transcript_id AT2G37760.4  
At2g37770	chr2:015834888	0.0	W/15834888-15835007,15835147-15835197,15835418-15835494,15835582-15835669,15835875-15836150,15836224-15836472,15836573-15836659	AT2G37770.2  CDS  gene_syn T8P21.32  go_process oxidation reduction|GO:0055114||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product aldo/keto reductase family protein  note aldo/keto reductase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: oxidation reduction; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Aldo/keto reductase, conserved site (InterPro:IPR018170); BEST Arabidopsis thaliana protein match is: aldo/keto reductase family protein (TAIR:AT2G37790.1); Has 14424 Blast hits to 14398 proteins in 1391 species: Archae - 167; Bacteria - 7993; Metazoa - 1896; Fungi - 1199; Plants - 715; Viruses - 0; Other Eukaryotes - 2454 (source: NCBI BLink).  protein_id AT2G37770.2p  transcript_id AT2G37770.2  protein_id AT2G37770.2p  transcript_id AT2G37770.2  
At2g37770	chr2:015834888	0.0	W/15834888-15835007,15835147-15835197,15835418-15835494,15835582-15835669,15835875-15836390	AT2G37770.1  CDS  gene_syn T8P21.32  go_process oxidation reduction|GO:0055114||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product aldo/keto reductase family protein  note aldo/keto reductase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: oxidation reduction; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Aldo/keto reductase, conserved site (InterPro:IPR018170); BEST Arabidopsis thaliana protein match is: aldo/keto reductase family protein (TAIR:AT2G37790.1); Has 11684 Blast hits to 11665 proteins in 1297 species: Archae - 139; Bacteria - 6151; Metazoa - 1819; Fungi - 1082; Plants - 559; Viruses - 0; Other Eukaryotes - 1934 (source: NCBI BLink).  protein_id AT2G37770.1p  transcript_id AT2G37770.1  protein_id AT2G37770.1p  transcript_id AT2G37770.1  
At2g37780	chr2:015837442	0.0	C/15837442-15838302	AT2G37780.1  CDS  gene_syn T8P21.31, T8P21_31  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT2G37820.1); Has 2298 Blast hits to 1706 proteins in 186 species: Archae - 0; Bacteria - 44; Metazoa - 712; Fungi - 296; Plants - 995; Viruses - 0; Other Eukaryotes - 251 (source: NCBI BLink).  protein_id AT2G37780.1p  transcript_id AT2G37780.1  protein_id AT2G37780.1p  transcript_id AT2G37780.1  
At2g37790	chr2:015838838	0.0	W/15838838-15838957,15839039-15839089,15839438-15839514,15839614-15839701,15839951-15840226,15840312-15840560,15840669-15840752	AT2G37790.1  CDS  gene_syn T8P21.30, T8P21_30  go_process oxidation reduction|GO:0055114||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  product aldo/keto reductase family protein  note aldo/keto reductase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Aldo/keto reductase, conserved site (InterPro:IPR018170); BEST Arabidopsis thaliana protein match is: aldo/keto reductase family protein (TAIR:AT2G37770.2); Has 14317 Blast hits to 14296 proteins in 1374 species: Archae - 187; Bacteria - 8146; Metazoa - 1861; Fungi - 1118; Plants - 723; Viruses - 0; Other Eukaryotes - 2282 (source: NCBI BLink).  protein_id AT2G37790.1p  transcript_id AT2G37790.1  protein_id AT2G37790.1p  transcript_id AT2G37790.1  
At2g37800	chr2:015843563	0.0	C/15843563-15843610,15843342-15843494,15843074-15843251,15841039-15841850	AT2G37800.1  CDS  gene_syn T8P21.29, T8P21_29  go_process intracellular signaling cascade|GO:0007242||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular signaling cascade; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: CHP-rich zinc finger protein, putative (TAIR:AT2G37810.1); Has 1633 Blast hits to 581 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 41; Fungi - 6; Plants - 1577; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G37800.1p  transcript_id AT2G37800.1  protein_id AT2G37800.1p  transcript_id AT2G37800.1  
At2g37810	chr2:015845350	0.0	C/15845350-15846051	AT2G37810.1  CDS  gene_syn T8P21.28, T8P21_28  go_component cellular_component|GO:0005575||ND  product CHP-rich zinc finger protein, putative  note CHP-rich zinc finger protein, putative; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT2G37800.1); Has 1458 Blast hits to 559 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 0; Plants - 1395; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT2G37810.1p  transcript_id AT2G37810.1  protein_id AT2G37810.1p  transcript_id AT2G37810.1  
At2g37820	chr2:015847541	0.0	W/15847541-15848413	AT2G37820.1  CDS  gene_syn T8P21.27, T8P21_27  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT2G37800.1); Has 1703 Blast hits to 639 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 71; Fungi - 10; Plants - 1596; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT2G37820.1p  transcript_id AT2G37820.1  protein_id AT2G37820.1p  transcript_id AT2G37820.1  
At2g37830	chr2:015849271	0.0	C/15849271-15849591	AT2G37830.1  pseudogenic_transcript  pseudo  gene_syn T8P21.26, T8P21_26  note pseudogene, glycine-rich protein  
At2g37840	chr2:015851978	0.0	W/15851978-15852214,15852462-15852579,15852680-15852738,15852999-15853063,15853255-15853348,15853426-15853506,15853598-15853706,15854135-15854207,15854289-15854674,15854758-15855119,15855224-15855512,15855600-15855670,15855790-15856047	AT2G37840.1  CDS  gene_syn AT2G37850, T8P21.25, T8P21_25  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G53930.2); Has 97173 Blast hits to 94962 proteins in 2967 species: Archae - 59; Bacteria - 8657; Metazoa - 41939; Fungi - 8841; Plants - 18678; Viruses - 494; Other Eukaryotes - 18505 (source: NCBI BLink).  protein_id AT2G37840.1p  transcript_id AT2G37840.1  protein_id AT2G37840.1p  transcript_id AT2G37840.1  
At2g37840	chr2:015853108	0.0	W/15853108-15853175,15853255-15853348,15853426-15853506,15853598-15853706,15854135-15854207,15854289-15854674,15854758-15855119,15855224-15855512,15855600-15855670,15855790-15856047	AT2G37840.2  CDS  gene_syn AT2G37850, T8P21.25, T8P21_25  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G53930.2); Has 39807 Blast hits to 39375 proteins in 916 species: Archae - 9; Bacteria - 1751; Metazoa - 19238; Fungi - 4568; Plants - 4433; Viruses - 103; Other Eukaryotes - 9705 (source: NCBI BLink).  protein_id AT2G37840.2p  transcript_id AT2G37840.2  protein_id AT2G37840.2p  transcript_id AT2G37840.2  
At2g37860	chr2:015856952	0.0	W/15856952-15857521,15857609-15857707,15857795-15858015,15858116-15858185,15858268-15858347,15858442-15858506,15858600-15858793	AT2G37860.3  CDS  gene_syn LCD1, LOWER CELL DENSITY 1, T8P21.23, T8P21_23  gene LCD1  function Encodes a protein of unknown function. Mutants have pale leaves, lower cell density in the palisade parenchyma and increased sensitivity to ozone and virulent Pseudomonas syringae  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process leaf development|GO:0048366|12848826|IMP  go_function molecular_function|GO:0003674||ND  product LCD1 (LOWER CELL DENSITY 1)  note LOWER CELL DENSITY 1 (LCD1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: leaf development; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: RER1 (RETICULATA-RELATED 1) (TAIR:AT5G22790.1); Has 439 Blast hits to 387 proteins in 73 species: Archae - 2; Bacteria - 41; Metazoa - 72; Fungi - 25; Plants - 217; Viruses - 7; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT2G37860.3p  transcript_id AT2G37860.3  protein_id AT2G37860.3p  transcript_id AT2G37860.3  
At2g37860	chr2:015856952	0.0	W/15856952-15857521,15857609-15857707,15857795-15858015,15858116-15858185,15858268-15858351	AT2G37860.1  CDS  gene_syn LCD1, LOWER CELL DENSITY 1, T8P21.23, T8P21_23  gene LCD1  function Encodes a protein of unknown function. Mutants have pale leaves, lower cell density in the palisade parenchyma and increased sensitivity to ozone and virulent Pseudomonas syringae  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process leaf development|GO:0048366|12848826|IMP  go_function molecular_function|GO:0003674||ND  product LCD1 (LOWER CELL DENSITY 1)  note LOWER CELL DENSITY 1 (LCD1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: leaf development; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: RER1 (RETICULATA-RELATED 1) (TAIR:AT5G22790.1); Has 432 Blast hits to 380 proteins in 73 species: Archae - 2; Bacteria - 41; Metazoa - 72; Fungi - 25; Plants - 211; Viruses - 7; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT2G37860.1p  transcript_id AT2G37860.1  protein_id AT2G37860.1p  transcript_id AT2G37860.1  
At2g37860	chr2:015856952	0.0	W/15856952-15857521,15857609-15857707,15857795-15858015,15858116-15858185,15858268-15858351	AT2G37860.2  CDS  gene_syn LCD1, LOWER CELL DENSITY 1, T8P21.23, T8P21_23  gene LCD1  function Encodes a protein of unknown function. Mutants have pale leaves, lower cell density in the palisade parenchyma and increased sensitivity to ozone and virulent Pseudomonas syringae  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process leaf development|GO:0048366|12848826|IMP  go_function molecular_function|GO:0003674||ND  product LCD1 (LOWER CELL DENSITY 1)  note LOWER CELL DENSITY 1 (LCD1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: leaf development; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: RER1 (RETICULATA-RELATED 1) (TAIR:AT5G22790.1); Has 432 Blast hits to 380 proteins in 73 species: Archae - 2; Bacteria - 41; Metazoa - 72; Fungi - 25; Plants - 211; Viruses - 7; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT2G37860.2p  transcript_id AT2G37860.2  protein_id AT2G37860.2p  transcript_id AT2G37860.2  
At2g37870	chr2:015859280	0.0	W/15859280-15859610,15859707-15859723	AT2G37870.1  CDS  gene_syn T8P21.22, T8P21_22  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_function lipid binding|GO:0008289||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT5G05960.1); Has 317 Blast hits to 317 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 317; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G37870.1p  transcript_id AT2G37870.1  protein_id AT2G37870.1p  transcript_id AT2G37870.1  
At2g37880	chr2:015860705	0.0	W/15860705-15861448	AT2G37880.1  CDS  gene_syn T8P21.21, T8P21_21  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF617, plant (InterPro:IPR006460); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21050.1); Has 134 Blast hits to 134 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G37880.1p  transcript_id AT2G37880.1  protein_id AT2G37880.1p  transcript_id AT2G37880.1  
At2g37890	chr2:015863640	0.0	C/15863640-15863849,15863174-15863350,15862937-15863086,15862711-15862812,15862563-15862633,15862375-15862442,15862017-15862252	AT2G37890.1  CDS  gene_syn T8P21.20, T8P21_20  go_component mitochondrial inner membrane|GO:0005743||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function transporter activity|GO:0005215||ISS  go_function binding|GO:0005488||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: transporter activity, binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: mitochondrial substrate carrier family protein (TAIR:AT3G53940.1); Has 22672 Blast hits to 10476 proteins in 362 species: Archae - 0; Bacteria - 0; Metazoa - 11604; Fungi - 6274; Plants - 2667; Viruses - 0; Other Eukaryotes - 2127 (source: NCBI BLink).  protein_id AT2G37890.1p  transcript_id AT2G37890.1  protein_id AT2G37890.1p  transcript_id AT2G37890.1  
At2g37900	chr2:015866261	0.0	C/15866261-15866408,15865917-15866134,15865281-15865825,15864396-15865212	AT2G37900.1  CDS  gene_syn T8P21.19, T8P21_19  go_component membrane|GO:0016020||IEA  go_process oligopeptide transport|GO:0006857||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region, conserved site (InterPro:IPR018456), TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT3G53960.1); Has 4098 Blast hits to 4006 proteins in 743 species: Archae - 0; Bacteria - 1775; Metazoa - 451; Fungi - 287; Plants - 1139; Viruses - 0; Other Eukaryotes - 446 (source: NCBI BLink).  protein_id AT2G37900.1p  transcript_id AT2G37900.1  protein_id AT2G37900.1p  transcript_id AT2G37900.1  
At2g37910	chr2:015868399	0.0	W/15868399-15869097	AT2G37910.1  CDS  gene_syn T8P21.18, T8P21_18  go_component endomembrane system|GO:0012505||IEA  go_process cation transport|GO:0006812|11500563|IC  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  product cation/hydrogen exchanger, putative (CHX21)  note cation/hydrogen exchanger, putative (CHX21); FUNCTIONS IN: monovalent cation:proton antiporter activity; INVOLVED IN: cation transport; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: CDC48C; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (TAIR:AT3G01610.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G37910.1p  transcript_id AT2G37910.1  protein_id AT2G37910.1p  transcript_id AT2G37910.1  
At2g37920	chr2:015869269	0.0	C/15869269-15870024	AT2G37920.1  CDS  gene_syn T8P21.17, T8P21_17, emb1513, embryo defective 1513  gene emb1513  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function copper ion transmembrane transporter activity|GO:0005375||ISS  product emb1513 (embryo defective 1513); copper ion transmembrane transporter  note embryo defective 1513 (emb1513); FUNCTIONS IN: copper ion transmembrane transporter activity; INVOLVED IN: embryonic development ending in seed dormancy; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase, putative (TAIR:AT2G07750.1); Has 26 Blast hits to 26 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G37920.1p  transcript_id AT2G37920.1  protein_id AT2G37920.1p  transcript_id AT2G37920.1  
At2g37925	chr2:015870258	0.0	C/15870258-15870695	AT2G37925.1  CDS  gene_syn COPT4  gene COPT4  function encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast  go_component integral to membrane|GO:0016021||IEA  go_process copper ion transport|GO:0006825||IEA  go_process copper ion transport|GO:0006825||ISS  go_function copper ion transmembrane transporter activity|GO:0005375||ISS  go_function high affinity copper ion transmembrane transporter activity|GO:0015089|12650623|IGI  product COPT4; copper ion transmembrane transporter/ high affinity copper ion transmembrane transporter  note COPT4; FUNCTIONS IN: high affinity copper ion transmembrane transporter activity, copper ion transmembrane transporter activity; INVOLVED IN: copper ion transport; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Ctr copper transporter (InterPro:IPR007274); BEST Arabidopsis thaliana protein match is: copper transporter, putative (TAIR:AT2G26975.1); Has 86 Blast hits to 85 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT2G37925.1p  transcript_id AT2G37925.1  protein_id AT2G37925.1p  transcript_id AT2G37925.1  
At2g37930	chr2:015873284	0.0	W/15873284-15874444,15874528-15874770	AT2G37930.1  CDS  gene_syn T8P21.16, T8P21_16  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, chloroplast envelope; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01030.2); Has 242 Blast hits to 206 proteins in 40 species: Archae - 0; Bacteria - 5; Metazoa - 81; Fungi - 26; Plants - 67; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT2G37930.1p  transcript_id AT2G37930.1  protein_id AT2G37930.1p  transcript_id AT2G37930.1  
At2g37940	chr2:015877169	0.0	W/15877169-15877201,15877285-15877374,15877673-15877759,15877870-15877938,15878118-15878198,15878301-15878372,15878455-15878515,15878616-15878715,15878799-15878894,15878992-15879038,15879138-15879244,15879337-15879411	AT2G37940.1  CDS  gene_syn T8P21.15, T8P21_15  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: phosphatidic acid phosphatase-related / PAP2-related (TAIR:AT3G54020.1); Has 316 Blast hits to 316 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 213; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT2G37940.1p  transcript_id AT2G37940.1  protein_id AT2G37940.1p  transcript_id AT2G37940.1  
At2g37950	chr2:015883286	0.0	C/15883286-15883665,15882536-15882779	AT2G37950.1  CDS  gene_syn T8P21.14, T8P21_14  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G05830.1); Has 317 Blast hits to 317 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 30; Fungi - 2; Plants - 280; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT2G37950.1p  transcript_id AT2G37950.1  protein_id AT2G37950.1p  transcript_id AT2G37950.1  
At2g37960	chr2:015889004	0.0	C/15889004-15889180,15888640-15888916,15888177-15888332,15887439-15888069,15887244-15887350,15887094-15887153,15886962-15886996	AT2G37960.1  CDS  gene_syn T8P21.13, T8P21_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54060.2); Has 321 Blast hits to 186 proteins in 62 species: Archae - 0; Bacteria - 97; Metazoa - 50; Fungi - 66; Plants - 13; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT2G37960.1p  transcript_id AT2G37960.1  protein_id AT2G37960.1p  transcript_id AT2G37960.1  
At2g37960	chr2:015889004	0.0	C/15889004-15889180,15888640-15888916,15888177-15888332,15887439-15888069,15887244-15887350,15887094-15887153,15886962-15886996	AT2G37960.2  CDS  gene_syn T8P21.13, T8P21_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54060.2); Has 321 Blast hits to 186 proteins in 62 species: Archae - 0; Bacteria - 97; Metazoa - 50; Fungi - 66; Plants - 13; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT2G37960.2p  transcript_id AT2G37960.2  protein_id AT2G37960.2p  transcript_id AT2G37960.2  
At2g37970	chr2:015891027	0.0	W/15891027-15891704	AT2G37970.1  CDS  gene_syn SOUL-1, T8P21.12, T8P21_12  gene SOUL-1  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process red or far red light signaling pathway|GO:0010017|16891401|IMP  go_function binding|GO:0005488||ISS  product SOUL-1; binding  note SOUL-1; FUNCTIONS IN: binding; INVOLVED IN: red or far red light signaling pathway, N-terminal protein myristoylation; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SOUL haem-binding protein (InterPro:IPR006917); BEST Arabidopsis thaliana protein match is: SOUL heme-binding family protein (TAIR:AT3G10130.1); Has 1201 Blast hits to 1201 proteins in 109 species: Archae - 10; Bacteria - 143; Metazoa - 61; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 908 (source: NCBI BLink).  protein_id AT2G37970.1p  transcript_id AT2G37970.1  protein_id AT2G37970.1p  transcript_id AT2G37970.1  
At2g37975	chr2:015891900	0.0	C/15891900-15892136	AT2G37975.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Yos1-like (InterPro:IPR013880); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54085.2); Has 146 Blast hits to 146 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 89; Fungi - 25; Plants - 26; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT2G37975.1p  transcript_id AT2G37975.1  protein_id AT2G37975.1p  transcript_id AT2G37975.1  
At2g37980	chr2:015896865	0.0	C/15896865-15897452,15895900-15895972,15895748-15895818,15895575-15895663,15895361-15895493,15895050-15895282,15894491-15894967,15894162-15894414	AT2G37980.1  CDS  gene_syn T8P21.11, T8P21_11  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54100.1); Has 436 Blast hits to 424 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 434; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G37980.1p  transcript_id AT2G37980.1  protein_id AT2G37980.1p  transcript_id AT2G37980.1  
At2g37990	chr2:015900713	0.0	W/15900713-15900813,15901305-15901455,15901642-15901693,15901836-15901964,15902109-15902226,15902434-15902617,15902702-15902815,15902921-15903028	AT2G37990.1  CDS  gene_syn T8P21.10, T8P21_10  go_component nucleolus|GO:0005730|15496452|IDA  go_process ribosome biogenesis|GO:0042254||IEA  product ribosome biogenesis regulatory protein (RRS1) family protein  note ribosome biogenesis regulatory protein (RRS1) family protein; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal biogenesis regulatory protein (InterPro:IPR007023); Has 305 Blast hits to 303 proteins in 145 species: Archae - 0; Bacteria - 2; Metazoa - 119; Fungi - 88; Plants - 34; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT2G37990.1p  transcript_id AT2G37990.1  protein_id AT2G37990.1p  transcript_id AT2G37990.1  
At2g38000	chr2:015905255	0.0	C/15905255-15905276,15904967-15905164,15904649-15904703,15904221-15904552,15903996-15904137,15903779-15903904,15903315-15903699	AT2G38000.1  CDS  gene_syn T8P21.9, T8P21_9  go_component cellular_component|GO:0005575||ND  product chaperone protein dnaJ-related  note chaperone protein dnaJ-related; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 643 Blast hits to 619 proteins in 228 species: Archae - 19; Bacteria - 379; Metazoa - 79; Fungi - 4; Plants - 29; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).  protein_id AT2G38000.1p  transcript_id AT2G38000.1  protein_id AT2G38000.1p  transcript_id AT2G38000.1  
At2g38010	chr2:015906862	0.0	W/15906862-15907163,15907269-15907477,15907567-15907900,15908006-15908254,15908337-15908607,15908689-15908814,15908906-15908969,15909059-15909228,15909319-15909867	AT2G38010.1  CDS  gene_syn T8P21.8, T8P21_8  go_component endomembrane system|GO:0012505||IEA  go_function ceramidase activity|GO:0017040||ISS  product ceramidase family protein  note ceramidase family protein; FUNCTIONS IN: ceramidase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Neutral/alkaline nonlysosomal ceramidase (InterPro:IPR006823); BEST Arabidopsis thaliana protein match is: ceramidase family protein (TAIR:AT1G07380.1); Has 429 Blast hits to 381 proteins in 134 species: Archae - 0; Bacteria - 141; Metazoa - 156; Fungi - 63; Plants - 30; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT2G38010.1p  transcript_id AT2G38010.1  protein_id AT2G38010.1p  transcript_id AT2G38010.1  
At2g38010	chr2:015906862	0.0	W/15906862-15907163,15907269-15907477,15907567-15908254,15908337-15908607,15908689-15908814,15908906-15908969,15909059-15909228,15909319-15909867	AT2G38010.2  CDS  gene_syn T8P21.8, T8P21_8  go_component endomembrane system|GO:0012505||IEA  go_function ceramidase activity|GO:0017040||ISS  product ceramidase family protein  note ceramidase family protein; FUNCTIONS IN: ceramidase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Neutral/alkaline nonlysosomal ceramidase (InterPro:IPR006823); BEST Arabidopsis thaliana protein match is: ceramidase family protein (TAIR:AT1G07380.1); Has 659 Blast hits to 379 proteins in 134 species: Archae - 0; Bacteria - 189; Metazoa - 268; Fungi - 122; Plants - 31; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT2G38010.2p  transcript_id AT2G38010.2  protein_id AT2G38010.2p  transcript_id AT2G38010.2  
At2g38020	chr2:015913348	0.0	C/15913348-15914190,15912942-15913232,15912552-15912691,15912378-15912483,15912204-15912296,15912002-15912091,15911793-15911906,15911552-15911659,15911377-15911450,15911249-15911303,15910959-15911140,15910749-15910878,15910564-15910666,15910272-15910447	AT2G38020.2  CDS  gene_syn EMB258, MAN, MANGLED, T8P21.7, T8P21_7, VACUOLELESS 1, VCL1  gene VCL1  function necessary for proper vacuole formation and morphogenesis in Arabidopsis  go_component plant-type vacuole membrane|GO:0009705|12589039|IDA  go_process vacuole organization|GO:0007033|12589039|TAS  go_function molecular_function|GO:0003674||ND  product VCL1 (VACUOLELESS 1)  note VACUOLELESS 1 (VCL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vacuole organization; LOCATED IN: plant-type vacuole membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Vps16, N-terminal (InterPro:IPR006926), Vacuolar protein sorting-associated protein 16 (InterPro:IPR016534), Vps16, C-terminal (InterPro:IPR006925); Has 340 Blast hits to 296 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 129; Fungi - 87; Plants - 22; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).  protein_id AT2G38020.2p  transcript_id AT2G38020.2  protein_id AT2G38020.2p  transcript_id AT2G38020.2  
At2g38020	chr2:015913348	0.0	C/15913348-15914190,15912942-15913232,15912552-15912691,15912378-15912483,15912204-15912296,15912002-15912091,15911793-15911906,15911552-15911659,15911377-15911450,15911249-15911303,15910959-15911140,15910749-15910878,15910564-15910666,15910350-15910447,15910098-15910247	AT2G38020.1  CDS  gene_syn EMB258, MAN, MANGLED, T8P21.7, T8P21_7, VACUOLELESS 1, VCL1  gene VCL1  function necessary for proper vacuole formation and morphogenesis in Arabidopsis  go_component plant-type vacuole membrane|GO:0009705|12589039|IDA  go_process vacuole organization|GO:0007033|12589039|TAS  go_function molecular_function|GO:0003674||ND  product VCL1 (VACUOLELESS 1)  note VACUOLELESS 1 (VCL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vacuole organization; LOCATED IN: plant-type vacuole membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Vps16, N-terminal (InterPro:IPR006926), Vacuolar protein sorting-associated protein 16 (InterPro:IPR016534), Vps16, C-terminal (InterPro:IPR006925); Has 342 Blast hits to 296 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 129; Fungi - 87; Plants - 22; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT2G38020.1p  transcript_id AT2G38020.1  protein_id AT2G38020.1p  transcript_id AT2G38020.1  
At2g38025	chr2:015916668	0.0	C/15916668-15916692,15916424-15916589,15916248-15916332,15916105-15916168,15915764-15915869,15915614-15915668,15915492-15915545,15915239-15915388	AT2G38025.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: OTU-like cysteine protease family protein (TAIR:AT3G57810.3); Has 100 Blast hits to 100 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 21; Fungi - 2; Plants - 69; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT2G38025.1p  transcript_id AT2G38025.1  protein_id AT2G38025.1p  transcript_id AT2G38025.1  
At2g38030	chr2:015916817	0.0	W/15916817-15916889	AT2G38030.1  tRNA  gene_syn 44466.TRNA-GLU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Glu (anticodon: CTC)  transcript_id AT2G38030.1  
At2g38040	chr2:015917612	0.0	W/15917612-15917950,15918052-15918126,15918261-15918368,15918461-15918621,15918715-15918829,15918911-15919065,15919151-15919202,15919284-15919352,15919441-15919518,15919592-15920749	AT2G38040.1  CDS  gene_syn CAC3, CARBOXYLTRANSFERASE ALPHA SUBUNIT, T8P21.5, T8P21_5  gene CAC3  function encodes the carboxyltransferase alpha subunit of acetyl-CoA carboxylase, involved in de novo fatty acid biosynthesis  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process fatty acid biosynthetic process|GO:0006633||IEA  go_component acetyl-CoA carboxylase complex|GO:0009317||ISS  go_process fatty acid biosynthetic process|GO:0006633||ISS  go_function acetyl-CoA carboxylase activity|GO:0003989||ISS  go_function acetyl-CoA carboxylase activity|GO:0003989||NAS  product CAC3; acetyl-CoA carboxylase  note CAC3; FUNCTIONS IN: acetyl-CoA carboxylase activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: acetyl-CoA carboxylase complex, chloroplast stroma, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acetyl-CoA carboxylase, alpha subunit (InterPro:IPR001095), Acetyl-coenzyme A carboxyltransferase, C-terminal (InterPro:IPR011763); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38580.1); Has 31533 Blast hits to 22414 proteins in 1754 species: Archae - 382; Bacteria - 5508; Metazoa - 12960; Fungi - 1945; Plants - 916; Viruses - 75; Other Eukaryotes - 9747 (source: NCBI BLink).  protein_id AT2G38040.1p  transcript_id AT2G38040.1  protein_id AT2G38040.1p  transcript_id AT2G38040.1  
At2g38040	chr2:015917612	0.0	W/15917612-15917950,15918052-15918126,15918261-15918368,15918461-15918621,15918715-15918829,15918911-15919065,15919151-15919202,15919284-15919352,15919441-15919518,15919592-15920749	AT2G38040.2  CDS  gene_syn CAC3, CARBOXYLTRANSFERASE ALPHA SUBUNIT, T8P21.5, T8P21_5  gene CAC3  function encodes the carboxyltransferase alpha subunit of acetyl-CoA carboxylase, involved in de novo fatty acid biosynthesis  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process fatty acid biosynthetic process|GO:0006633||IEA  go_component acetyl-CoA carboxylase complex|GO:0009317||ISS  go_process fatty acid biosynthetic process|GO:0006633||ISS  go_function acetyl-CoA carboxylase activity|GO:0003989||ISS  go_function acetyl-CoA carboxylase activity|GO:0003989||NAS  product CAC3; acetyl-CoA carboxylase  note CAC3; FUNCTIONS IN: acetyl-CoA carboxylase activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: acetyl-CoA carboxylase complex, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acetyl-CoA carboxylase, alpha subunit (InterPro:IPR001095), Acetyl-coenzyme A carboxyltransferase, C-terminal (InterPro:IPR011763); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38580.1); Has 31533 Blast hits to 22414 proteins in 1754 species: Archae - 382; Bacteria - 5508; Metazoa - 12960; Fungi - 1945; Plants - 916; Viruses - 75; Other Eukaryotes - 9747 (source: NCBI BLink).  protein_id AT2G38040.2p  transcript_id AT2G38040.2  protein_id AT2G38040.2p  transcript_id AT2G38040.2  
At2g38050	chr2:015921781	0.0	C/15921781-15922176,15921303-15921695	AT2G38050.1  CDS  gene_syn DE-ETIOLATED 2, DET2, DWARF 6, DWF6, STEROID REDUCTASE DET2, T8P21.4, T8P21_4  gene DET2  function Similar to mammalian steroid-5-alpha-reductase. Involved in the brassinolide biosynthetic pathway.  go_component cytoplasm|GO:0005737||IEA  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process response to light stimulus|GO:0009416|8602526|TAS  go_process brassinosteroid homeostasis|GO:0010268|15908602|IEP  go_process brassinosteroid biosynthetic process|GO:0016132|10398719|IDA  go_process brassinosteroid biosynthetic process|GO:0016132|8602526|IMP  go_function sterol 5-alpha reductase activity|GO:0009917|10398719|IDA  product DET2 (DE-ETIOLATED 2); sterol 5-alpha reductase  note DE-ETIOLATED 2 (DET2); FUNCTIONS IN: sterol 5-alpha reductase activity; INVOLVED IN: response to light stimulus, brassinosteroid homeostasis, brassinosteroid biosynthetic process; LOCATED IN: endomembrane system, integral to membrane, membrane, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal (InterPro:IPR001104), 3-oxo-5-alpha-steroid 4-dehydrogenase (InterPro:IPR016636); BEST Arabidopsis thaliana protein match is: 3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein (TAIR:AT5G16010.1); Has 1193 Blast hits to 1191 proteins in 196 species: Archae - 0; Bacteria - 83; Metazoa - 370; Fungi - 122; Plants - 127; Viruses - 0; Other Eukaryotes - 491 (source: NCBI BLink).  protein_id AT2G38050.1p  transcript_id AT2G38050.1  protein_id AT2G38050.1p  transcript_id AT2G38050.1  
At2g38060	chr2:015925201	0.0	C/15925201-15925623,15924207-15924433,15923755-15924109,15923618-15923662,15923379-15923525,15923157-15923294,15923000-15923033,15922727-15922896	AT2G38060.1  CDS  gene_syn PHOSPHATE TRANSPORTER 4;2, PHT4;2, T8P21.3, T8P21_3  gene PHT4;2  function Encodes an inorganic phosphate transporter (PHT4;2).  go_component plastid|GO:0009536|18086223|IDA  go_component membrane|GO:0016020||ISS  go_function inorganic phosphate transmembrane transporter activity|GO:0005315|18086223|IDA  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function organic anion transmembrane transporter activity|GO:0008514||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product PHT4;2 (PHOSPHATE TRANSPORTER 4;2); carbohydrate transmembrane transporter/ inorganic phosphate transmembrane transporter/ organic anion transmembrane transporter/ sugar:hydrogen symporter  note PHOSPHATE TRANSPORTER 4;2 (PHT4;2); FUNCTIONS IN: organic anion transmembrane transporter activity, carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, inorganic phosphate transmembrane transporter activity; LOCATED IN: plastid, membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: transporter-related (TAIR:AT3G46980.3); Has 22233 Blast hits to 22041 proteins in 1345 species: Archae - 279; Bacteria - 16341; Metazoa - 2601; Fungi - 487; Plants - 255; Viruses - 0; Other Eukaryotes - 2270 (source: NCBI BLink).  protein_id AT2G38060.1p  transcript_id AT2G38060.1  protein_id AT2G38060.1p  transcript_id AT2G38060.1  
At2g38070	chr2:015928737	0.0	W/15928737-15930596	AT2G38070.1  CDS  gene_syn T8P21.2, T8P21_2  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF740 (InterPro:IPR008004); BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G09070.1); Has 75 Blast hits to 75 proteins in 20 species: Archae - 0; Bacteria - 1; Metazoa - 11; Fungi - 3; Plants - 40; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT2G38070.1p  transcript_id AT2G38070.1  protein_id AT2G38070.1p  transcript_id AT2G38070.1  
At2g38080	chr2:015934540	0.0	W/15934540-15934635,15935098-15935249,15935329-15935573,15935861-15935989,15936074-15936997,15937222-15937352	AT2G38080.1  CDS  gene_syn F16M14.1, F16M14_1, IRREGULAR XYLEM 12, IRX12, LAC4, LACCASE 4  gene IRX12  function Encodes a protein with similarity to putative laccase, a member of laccase family (17 members in Arabidopsis). Might be involved in cell wall biosynthesis. Mutants have a mild irregular xylem phenotype.  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process secondary cell wall biogenesis|GO:0009834|15980264|IMP  go_function laccase activity|GO:0008471|15940465|ISS  product IRX12 (IRREGULAR XYLEM 12); laccase  note IRREGULAR XYLEM 12 (IRX12); FUNCTIONS IN: laccase activity; INVOLVED IN: secondary cell wall biogenesis; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: LAC10 (laccase 10); laccase (TAIR:AT5G01190.1); Has 6342 Blast hits to 5603 proteins in 910 species: Archae - 24; Bacteria - 2176; Metazoa - 437; Fungi - 2512; Plants - 912; Viruses - 0; Other Eukaryotes - 281 (source: NCBI BLink).  protein_id AT2G38080.1p  transcript_id AT2G38080.1  protein_id AT2G38080.1p  transcript_id AT2G38080.1  
At2g38090	chr2:015945278	0.0	W/15945278-15945723,15946325-15946775	AT2G38090.1  CDS  gene_syn F16M14.2, F16M14_2  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT5G58900.1); Has 1110 Blast hits to 1107 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 201; Fungi - 2; Plants - 818; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT2G38090.1p  transcript_id AT2G38090.1  protein_id AT2G38090.1p  transcript_id AT2G38090.1  
At2g38100	chr2:015950007	0.0	C/15950007-15950228,15949417-15949910,15948484-15949333	AT2G38100.1  CDS  gene_syn F16M14.3, F16M14_3  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process oligopeptide transport|GO:0006857||IEA  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  go_function uracil transmembrane transporter activity|GO:0015210||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: uracil transmembrane transporter activity, amino acid transmembrane transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.10 ten leaves visible, LP.12 twelve leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109); BEST Arabidopsis thaliana protein match is: PTR5 (PEPTIDE TRANSPORTER 5); dipeptide transporter/ transporter (TAIR:AT5G01180.1); Has 1575 Blast hits to 1562 proteins in 232 species: Archae - 0; Bacteria - 331; Metazoa - 289; Fungi - 2; Plants - 943; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT2G38100.1p  transcript_id AT2G38100.1  protein_id AT2G38100.1p  transcript_id AT2G38100.1  
At2g38110	chr2:015954729	0.0	C/15954729-15955364,15952816-15953685	AT2G38110.1  CDS  gene_syn ATGPAT6, F16M14.4, F16M14_4, GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6, GPAT6  gene GPAT6  function Encodes a protein with glycerol-3-phosphate acyltransferase activity.  go_process metabolic process|GO:0008152||IEA  go_process metabolic process|GO:0008152||ISS  go_function 1-acylglycerol-3-phosphate O-acyltransferase activity|GO:0003841|12897259|IGI  go_function acyltransferase activity|GO:0008415||ISS  product GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6); 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase  note GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6 (GPAT6); FUNCTIONS IN: 1-acylglycerol-3-phosphate O-acyltransferase activity, acyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: GPAT8 (glycerol-3-phosphate acyltransferase 8); acyltransferase/ glycerol-3-phosphate O-acyltransferase (TAIR:AT4G00400.1); Has 237 Blast hits to 232 proteins in 35 species: Archae - 0; Bacteria - 28; Metazoa - 17; Fungi - 0; Plants - 183; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G38110.1p  transcript_id AT2G38110.1  protein_id AT2G38110.1p  transcript_id AT2G38110.1  
At2g38120	chr2:015973493	0.0	W/15973493-15973669,15973763-15973948,15974037-15974149,15974246-15974429,15974708-15974805,15975327-15975534,15975621-15975878,15976559-15976792	AT2G38120.1  CDS  gene_syn AUX1, AUXIN RESISTANT 1, F16M14.5, F16M14_5, MAP1, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, PIR1, WAV5, WAVY ROOTS 5  gene AUX1  function Encodes an auxin influx transporter. AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. AUX1 action in the lateral root cap and/or epidermal cells influences lateral root initiation and positioning.  go_component endosome|GO:0005768|17114355|IDA  go_component Golgi apparatus|GO:0005794|17114355|IDA  go_component plasma membrane|GO:0005886|16690816|IDA  go_component cell surface|GO:0009986|11641271|IDA  go_component membrane|GO:0016020||ISS  go_process establishment of planar polarity|GO:0001736|17084699|IGI  go_process amino acid transport|GO:0006865||ISS  go_process response to nematode|GO:0009624|16478044|IEP  go_process response to ethylene stimulus|GO:0009723||NAS  go_process response to auxin stimulus|GO:0009733||NAS  go_process auxin polar transport|GO:0009926|16839804|TAS  go_process positive gravitropism|GO:0009958|8688077|IMP  go_process lateral root formation|GO:0010311|17215297|IMP  go_process lateral root formation|GO:0010311|18622388|IGI  go_process root hair cell differentiation|GO:0048765|17084699|IGI  go_function transporter activity|GO:0005215||ISS  go_function auxin binding|GO:0010011|18614710|IDA  go_function auxin influx transmembrane transporter activity|GO:0010328|16677815|IDA  go_function amino acid transmembrane transporter activity|GO:0015171|9484486|ISS  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product AUX1 (AUXIN RESISTANT 1); amino acid transmembrane transporter/ auxin binding / auxin influx transmembrane transporter/ transporter  note AUXIN RESISTANT 1 (AUX1); FUNCTIONS IN: auxin binding, auxin influx transmembrane transporter activity, amino acid transmembrane transporter activity, transporter activity; INVOLVED IN: in 9 processes; LOCATED IN: endosome, Golgi apparatus, plasma membrane, cell surface, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid permease, putative (TAIR:AT5G01240.1); Has 756 Blast hits to 752 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 108; Fungi - 188; Plants - 436; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT2G38120.1p  transcript_id AT2G38120.1  protein_id AT2G38120.1p  transcript_id AT2G38120.1  
At2g38130	chr2:015979966	0.0	C/15979966-15980145,15979746-15979866,15979551-15979606,15978639-15978854	AT2G38130.1  CDS  gene_syn ATMAK3, F16M14.6, F16M14_6  gene ATMAK3  function Encodes the Arabidopsis homolog of the yeast protein MAK3, a component of the N-terminal acetyltransferase complex C. In mutant plants, synthesis of plastome-encoded photosystem II core proteins D1 and CP47 is affected resulting in fewer thylakoid multiprotein complexes.  go_process metabolic process|GO:0008152||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_component cytoplasm|GO:0005737|12897255|IDA  go_process metabolic process|GO:0008152||ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product ATMAK3; N-acetyltransferase  note ATMAK3; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: GCN5-related N-acetyltransferase, putative (TAIR:AT5G13780.1); Has 2144 Blast hits to 2143 proteins in 702 species: Archae - 161; Bacteria - 929; Metazoa - 498; Fungi - 186; Plants - 104; Viruses - 0; Other Eukaryotes - 266 (source: NCBI BLink).  protein_id AT2G38130.1p  transcript_id AT2G38130.1  protein_id AT2G38130.1p  transcript_id AT2G38130.1  
At2g38130	chr2:015979966	0.0	C/15979966-15980145,15979746-15979866,15979551-15979606,15978639-15978854	AT2G38130.2  CDS  gene_syn ATMAK3, F16M14.6, F16M14_6  gene ATMAK3  function Encodes the Arabidopsis homolog of the yeast protein MAK3, a component of the N-terminal acetyltransferase complex C. In mutant plants, synthesis of plastome-encoded photosystem II core proteins D1 and CP47 is affected resulting in fewer thylakoid multiprotein complexes.  go_process metabolic process|GO:0008152||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_component cytoplasm|GO:0005737|12897255|IDA  go_process metabolic process|GO:0008152||ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product ATMAK3; N-acetyltransferase  note ATMAK3; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: GCN5-related N-acetyltransferase, putative (TAIR:AT5G13780.1); Has 2144 Blast hits to 2143 proteins in 702 species: Archae - 161; Bacteria - 929; Metazoa - 498; Fungi - 186; Plants - 104; Viruses - 0; Other Eukaryotes - 266 (source: NCBI BLink).  protein_id AT2G38130.2p  transcript_id AT2G38130.2  protein_id AT2G38130.2p  transcript_id AT2G38130.2  
At2g38140	chr2:015980948	0.0	W/15980948-15981104,15981172-15981236,15981325-15981459	AT2G38140.1  CDS  gene_syn 30S RIBOSOMAL PROTEIN S31, F16M14.7, F16M14_7, PLASTID-SPECIFIC RIBOSOMAL PROTEIN 4, PSRP4  gene PSRP4  function plastid-specific ribosomal protein 4 (PSRP4) mRNA, complete  go_component chloroplast|GO:0009507|18431481|IDA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product PSRP4 (PLASTID-SPECIFIC RIBOSOMAL PROTEIN 4); structural constituent of ribosome  note PLASTID-SPECIFIC RIBOSOMAL PROTEIN 4 (PSRP4); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 61 Blast hits to 61 proteins in 17 species: Archae - 0; Bacteria - 17; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G38140.1p  transcript_id AT2G38140.1  protein_id AT2G38140.1p  transcript_id AT2G38140.1  
At2g38150	chr2:015981700	0.0	C/15981700-15982917	AT2G38150.1  CDS  gene_syn F16M14.8, F16M14_8  go_component Golgi stack|GO:0005795||IEA  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product transferase/ transferase, transferring glycosyl groups  note transferase/ transferase, transferring glycosyl groups; FUNCTIONS IN: transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, Golgi stack; CONTAINS InterPro DOMAIN/s: Alpha 1,4-glycosyltransferase conserved region (InterPro:IPR007652), Glycosyltransferase sugar-binding region containing DXD motif (InterPro:IPR007577); BEST Arabidopsis thaliana protein match is: alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing protein (TAIR:AT5G01250.1); Has 302 Blast hits to 301 proteins in 68 species: Archae - 0; Bacteria - 33; Metazoa - 187; Fungi - 14; Plants - 53; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT2G38150.1p  transcript_id AT2G38150.1  protein_id AT2G38150.1p  transcript_id AT2G38150.1  
At2g38152	chr2:015984985	0.0	C/15984985-15985278,15984062-15984910	AT2G38152.1  CDS  go_component Golgi stack|GO:0005795||IEA  go_function galactosyltransferase activity|GO:0008378||IEA  go_process biological_process|GO:0008150||ND  product galactosyltransferase  note galactosyltransferase; FUNCTIONS IN: galactosyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi stack; CONTAINS InterPro DOMAIN/s: Alpha 1,4-glycosyltransferase conserved region (InterPro:IPR007652), Glycosyltransferase sugar-binding region containing DXD motif (InterPro:IPR007577); BEST Arabidopsis thaliana protein match is: alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing protein (TAIR:AT3G09020.1).  protein_id AT2G38152.1p  transcript_id AT2G38152.1  protein_id AT2G38152.1p  transcript_id AT2G38152.1  
At2g38160	chr2:015988359	0.0	C/15988359-15988464,15987942-15988068,15987637-15987736,15986825-15987352,15986643-15986726	AT2G38160.1  CDS  gene_syn F16M14.9, F16M14_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40070.2); Has 897 Blast hits to 617 proteins in 154 species: Archae - 0; Bacteria - 169; Metazoa - 203; Fungi - 235; Plants - 128; Viruses - 29; Other Eukaryotes - 133 (source: NCBI BLink).  protein_id AT2G38160.1p  transcript_id AT2G38160.1  protein_id AT2G38160.1p  transcript_id AT2G38160.1  
At2g38170	chr2:015992894	0.0	C/15992894-15993178,15992536-15992603,15991923-15991951,15991621-15991817,15991173-15991397,15990944-15991072,15990574-15990819	AT2G38170.2  CDS  gene_syn ATCAX1, CAX1, F16M14.10, F16M14_10, HIGH AFFINITY CALCIUM ANTIPORTER CAX1, RARE COLD INDUCIBLE 4, RCI4, cation exchanger 1  gene CAX1  function Encodes a high affinity vacuolar calcium antiporter. The residue His 338 is critical to Ca2+ transport activity. Disruption of CAX1 reduces manganese and zinc of shoot tissue and results in a decrease in the activity of vacuolar V-type proton ATPase.  go_component vacuole|GO:0005773|15539469|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component vacuole|GO:0005773|10559438|IDA  go_component vacuolar membrane|GO:0005774|11500563|TAS  go_component plant-type vacuole membrane|GO:0009705|8710949|IDA  go_process calcium ion transport|GO:0006816|10559438|IGI  go_process calcium ion transport|GO:0006816|8710949|IDA  go_process calcium ion transport|GO:0006816|8710949|IGI  go_process cellular zinc ion homeostasis|GO:0006882|16055687|IMP  go_process cold acclimation|GO:0009631|14630965|IMP  go_process response to salt stress|GO:0009651|14583601|IMP  go_process cellular manganese ion homeostasis|GO:0030026|16055687|IMP  go_function calcium ion transmembrane transporter activity|GO:0015085|10559438|IGI  go_function calcium:cation antiporter activity|GO:0015368||ISS  go_function calcium:hydrogen antiporter activity|GO:0015369|15862304|IDA  go_function calcium:hydrogen antiporter activity|GO:0015369|8710949|IDA  go_function calcium:hydrogen antiporter activity|GO:0015369|8710949|IGI  product CAX1 (cation exchanger 1); calcium ion transmembrane transporter/ calcium:cation antiporter/ calcium:hydrogen antiporter  note cation exchanger 1 (CAX1); FUNCTIONS IN: calcium:cation antiporter activity, calcium ion transmembrane transporter activity, calcium:hydrogen antiporter activity; INVOLVED IN: cold acclimation, response to salt stress, cellular manganese ion homeostasis, cellular zinc ion homeostasis, calcium ion transport; LOCATED IN: plant-type vacuole membrane, vacuolar membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sodium/calcium exchanger membrane region (InterPro:IPR004837), Calcium/proton exchanger (InterPro:IPR004713); BEST Arabidopsis thaliana protein match is: CAX3 (CATION EXCHANGER 3); calcium:cation antiporter/ calcium:hydrogen antiporter/ cation:cation antiporter (TAIR:AT3G51860.1); Has 1055 Blast hits to 1002 proteins in 274 species: Archae - 2; Bacteria - 371; Metazoa - 16; Fungi - 409; Plants - 130; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).  protein_id AT2G38170.2p  transcript_id AT2G38170.2  protein_id AT2G38170.2p  transcript_id AT2G38170.2  
At2g38170	chr2:015992894	0.0	C/15992894-15993178,15992536-15992603,15991923-15991951,15991621-15991817,15991173-15991397,15990944-15991072,15990703-15990819,15990428-15990598,15990113-15990319	AT2G38170.3  CDS  gene_syn ATCAX1, CAX1, F16M14.10, F16M14_10, HIGH AFFINITY CALCIUM ANTIPORTER CAX1, RARE COLD INDUCIBLE 4, RCI4, cation exchanger 1  gene CAX1  function Encodes a high affinity vacuolar calcium antiporter. The residue His 338 is critical to Ca2+ transport activity. Disruption of CAX1 reduces manganese and zinc of shoot tissue and results in a decrease in the activity of vacuolar V-type proton ATPase.  go_component vacuole|GO:0005773|15539469|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component vacuole|GO:0005773|10559438|IDA  go_component vacuolar membrane|GO:0005774|11500563|TAS  go_component plant-type vacuole membrane|GO:0009705|8710949|IDA  go_process calcium ion transport|GO:0006816|10559438|IGI  go_process calcium ion transport|GO:0006816|8710949|IDA  go_process calcium ion transport|GO:0006816|8710949|IGI  go_process cellular zinc ion homeostasis|GO:0006882|16055687|IMP  go_process cold acclimation|GO:0009631|14630965|IMP  go_process response to salt stress|GO:0009651|14583601|IMP  go_process cellular manganese ion homeostasis|GO:0030026|16055687|IMP  go_function calcium ion transmembrane transporter activity|GO:0015085|10559438|IGI  go_function calcium:cation antiporter activity|GO:0015368||ISS  go_function calcium:hydrogen antiporter activity|GO:0015369|15862304|IDA  go_function calcium:hydrogen antiporter activity|GO:0015369|8710949|IDA  go_function calcium:hydrogen antiporter activity|GO:0015369|8710949|IGI  product CAX1 (cation exchanger 1); calcium ion transmembrane transporter/ calcium:cation antiporter/ calcium:hydrogen antiporter  note cation exchanger 1 (CAX1); FUNCTIONS IN: calcium:cation antiporter activity, calcium ion transmembrane transporter activity, calcium:hydrogen antiporter activity; INVOLVED IN: cold acclimation, response to salt stress, cellular manganese ion homeostasis, cellular zinc ion homeostasis, calcium ion transport; LOCATED IN: plant-type vacuole membrane, vacuolar membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sodium/calcium exchanger membrane region (InterPro:IPR004837), Calcium/proton exchanger superfamily (InterPro:IPR004798), Calcium/proton exchanger (InterPro:IPR004713); BEST Arabidopsis thaliana protein match is: CAX3 (CATION EXCHANGER 3); calcium:cation antiporter/ calcium:hydrogen antiporter/ cation:cation antiporter (TAIR:AT3G51860.1); Has 1999 Blast hits to 1887 proteins in 582 species: Archae - 12; Bacteria - 1027; Metazoa - 59; Fungi - 470; Plants - 134; Viruses - 0; Other Eukaryotes - 297 (source: NCBI BLink).  protein_id AT2G38170.3p  transcript_id AT2G38170.3  protein_id AT2G38170.3p  transcript_id AT2G38170.3  
At2g38170	chr2:015992894	0.0	C/15992894-15993178,15992536-15992603,15991923-15991951,15991621-15991817,15991173-15991397,15990944-15991072,15990703-15990819,15990428-15990598,15990229-15990319,15989429-15989508	AT2G38170.1  CDS  gene_syn ATCAX1, CAX1, F16M14.10, F16M14_10, HIGH AFFINITY CALCIUM ANTIPORTER CAX1, RARE COLD INDUCIBLE 4, RCI4, cation exchanger 1  gene CAX1  function Encodes a high affinity vacuolar calcium antiporter. The residue His 338 is critical to Ca2+ transport activity. Disruption of CAX1 reduces manganese and zinc of shoot tissue and results in a decrease in the activity of vacuolar V-type proton ATPase.  go_component vacuole|GO:0005773|15539469|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component vacuole|GO:0005773|10559438|IDA  go_component vacuolar membrane|GO:0005774|11500563|TAS  go_component plant-type vacuole membrane|GO:0009705|8710949|IDA  go_process calcium ion transport|GO:0006816|10559438|IGI  go_process calcium ion transport|GO:0006816|8710949|IDA  go_process calcium ion transport|GO:0006816|8710949|IGI  go_process cellular zinc ion homeostasis|GO:0006882|16055687|IMP  go_process cold acclimation|GO:0009631|14630965|IMP  go_process response to salt stress|GO:0009651|14583601|IMP  go_process cellular manganese ion homeostasis|GO:0030026|16055687|IMP  go_function calcium ion transmembrane transporter activity|GO:0015085|10559438|IGI  go_function calcium:cation antiporter activity|GO:0015368||ISS  go_function calcium:hydrogen antiporter activity|GO:0015369|15862304|IDA  go_function calcium:hydrogen antiporter activity|GO:0015369|8710949|IDA  go_function calcium:hydrogen antiporter activity|GO:0015369|8710949|IGI  product CAX1 (cation exchanger 1); calcium ion transmembrane transporter/ calcium:cation antiporter/ calcium:hydrogen antiporter  note cation exchanger 1 (CAX1); FUNCTIONS IN: calcium:cation antiporter activity, calcium ion transmembrane transporter activity, calcium:hydrogen antiporter activity; INVOLVED IN: cold acclimation, response to salt stress, cellular manganese ion homeostasis, cellular zinc ion homeostasis, calcium ion transport; LOCATED IN: plant-type vacuole membrane, vacuolar membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sodium/calcium exchanger membrane region (InterPro:IPR004837), Calcium/proton exchanger superfamily (InterPro:IPR004798), Calcium/proton exchanger (InterPro:IPR004713); BEST Arabidopsis thaliana protein match is: CAX3 (CATION EXCHANGER 3); calcium:cation antiporter/ calcium:hydrogen antiporter/ cation:cation antiporter (TAIR:AT3G51860.1); Has 2000 Blast hits to 1888 proteins in 583 species: Archae - 12; Bacteria - 1029; Metazoa - 58; Fungi - 470; Plants - 134; Viruses - 0; Other Eukaryotes - 297 (source: NCBI BLink).  protein_id AT2G38170.1p  transcript_id AT2G38170.1  protein_id AT2G38170.1p  transcript_id AT2G38170.1  
At2g38180	chr2:015997187	0.0	W/15997187-15997297,15997578-15997655,15997743-15997883,15997970-15998046,15998135-15998278,15998364-15998751	AT2G38180.1  CDS  gene_syn F16M14.11, F16M14_11  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity|GO:0016787||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Esterase, SGNH hydrolase-type, subgroup (InterPro:IPR013831), Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT3G11210.1); Has 381 Blast hits to 377 proteins in 137 species: Archae - 0; Bacteria - 104; Metazoa - 68; Fungi - 98; Plants - 78; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT2G38180.1p  transcript_id AT2G38180.1  protein_id AT2G38180.1p  transcript_id AT2G38180.1  
At2g38185	chr2:016000155	0.0	W/16000155-16000377,16000477-16000583,16000676-16000801,16001042-16001135,16001483-16001560,16001639-16001721,16001804-16001950,16002038-16002113,16002195-16002510,16002624-16002699	AT2G38185.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT2G38195.1); Has 1875 Blast hits to 1870 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 1139; Fungi - 31; Plants - 277; Viruses - 128; Other Eukaryotes - 300 (source: NCBI BLink).  protein_id AT2G38185.1p  transcript_id AT2G38185.1  protein_id AT2G38185.1p  transcript_id AT2G38185.1  
At2g38185	chr2:016000155	0.0	W/16000155-16000377,16000477-16000583,16000676-16000801,16001042-16001135,16001483-16001560,16001639-16001721,16001804-16001950,16002038-16002113,16002195-16002510,16002624-16002699	AT2G38185.2  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT2G38195.1); Has 1875 Blast hits to 1870 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 1139; Fungi - 31; Plants - 277; Viruses - 128; Other Eukaryotes - 300 (source: NCBI BLink).  protein_id AT2G38185.2p  transcript_id AT2G38185.2  protein_id AT2G38185.2p  transcript_id AT2G38185.2  
At2g38185	chr2:016000516	0.0	W/16000516-16000583,16000676-16000801,16001065-16001135,16001483-16001560,16001639-16001721,16001804-16001950,16002038-16002113,16002195-16002510,16002624-16002699	AT2G38185.3  CDS  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT2G38195.2); Has 1873 Blast hits to 1868 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 1139; Fungi - 31; Plants - 275; Viruses - 128; Other Eukaryotes - 300 (source: NCBI BLink).  protein_id AT2G38185.3p  transcript_id AT2G38185.3  protein_id AT2G38185.3p  transcript_id AT2G38185.3  
At2g38195	chr2:016002654	0.0	W/16002654-16002695,16004285-16004413,16004585-16004678,16005055-16005132,16005209-16005291,16005393-16005545,16005638-16005713,16005820-16006069,16006186-16006261	AT2G38195.2  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT2G38220.1); Has 2325 Blast hits to 2285 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 1431; Fungi - 50; Plants - 285; Viruses - 197; Other Eukaryotes - 362 (source: NCBI BLink).  protein_id AT2G38195.2p  transcript_id AT2G38195.2  protein_id AT2G38195.2p  transcript_id AT2G38195.2  
At2g38195	chr2:016003836	0.0	W/16003836-16003989,16004076-16004182,16004285-16004413,16004585-16004678,16005055-16005132,16005209-16005291,16005393-16005545,16005638-16005713,16005820-16006069,16006186-16006261	AT2G38195.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT2G38220.1); Has 2325 Blast hits to 2285 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 1431; Fungi - 50; Plants - 285; Viruses - 197; Other Eukaryotes - 362 (source: NCBI BLink).  protein_id AT2G38195.1p  transcript_id AT2G38195.1  protein_id AT2G38195.1p  transcript_id AT2G38195.1  
At2g38210	chr2:016007198	0.0	W/16007198-16007437	AT2G38210.1  CDS  gene_syn F16M14.14, F16M14_14, PDX1L4, PUTATIVE PDX1-LIKE PROTEIN 4  gene PDX1L4  go_component plasma membrane|GO:0005886|17151019|IDA  go_process response to stress|GO:0006950||ISS  go_process response to ethylene stimulus|GO:0009723||ISS  product PDX1L4 (PUTATIVE PDX1-LIKE PROTEIN 4)  note PUTATIVE PDX1-LIKE PROTEIN 4 (PDX1L4); INVOLVED IN: response to ethylene stimulus, response to stress; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, cultured cell; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Vitamin B6 biosynthesis protein (InterPro:IPR001852); BEST Arabidopsis thaliana protein match is: ATPDX1.1 (pyridoxine biosynthesis 1.1); protein heterodimerization (TAIR:AT2G38230.1); Has 1462 Blast hits to 1461 proteins in 499 species: Archae - 146; Bacteria - 735; Metazoa - 10; Fungi - 97; Plants - 79; Viruses - 0; Other Eukaryotes - 395 (source: NCBI BLink).  protein_id AT2G38210.1p  transcript_id AT2G38210.1  protein_id AT2G38210.1p  transcript_id AT2G38210.1  
At2g38220	chr2:016008112	0.0	W/16008112-16008265,16008352-16008458,16008562-16008690,16008862-16008955,16009317-16009409,16009486-16009568,16009670-16009822,16009915-16009990,16010097-16010346,16010463-16010538	AT2G38220.1  CDS  gene_syn F16M14.15, F16M14_15  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT2G38195.1); Has 1929 Blast hits to 1925 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 1143; Fungi - 39; Plants - 257; Viruses - 180; Other Eukaryotes - 310 (source: NCBI BLink).  protein_id AT2G38220.1p  transcript_id AT2G38220.1  protein_id AT2G38220.1p  transcript_id AT2G38220.1  
At2g38230	chr2:016011475	0.0	W/16011475-16012404	AT2G38230.1  CDS  gene_syn ATPDX1.1, F16M14.16, F16M14_16, pyridoxine biosynthesis 1.1  gene ATPDX1.1  function Encodes a protein predicted to function in tandem with PDX2 to form glutamine amidotransferase complex with involved in vitamin B6 biosynthesis.  go_component chloroplast|GO:0009507|18431481|IDA  go_component cytosol|GO:0005829|16157873|IDA  go_process response to absence of light|GO:0009646|17227548|IEP  go_process vitamin B6 biosynthetic process|GO:0042819|16157873|IGI  go_function protein heterodimerization activity|GO:0046982|16766694|IPI  product ATPDX1.1 (pyridoxine biosynthesis 1.1); protein heterodimerization  note pyridoxine biosynthesis 1.1 (ATPDX1.1); FUNCTIONS IN: protein heterodimerization activity; INVOLVED IN: vitamin B6 biosynthetic process, response to absence of light; LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 14 plant structures; CONTAINS InterPro DOMAIN/s: Vitamin B6 biosynthesis protein (InterPro:IPR001852), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: RSR4 (REDUCED SUGAR RESPONSE 4); protein heterodimerization/ protein homodimerization (TAIR:AT5G01410.1); Has 2563 Blast hits to 2560 proteins in 660 species: Archae - 150; Bacteria - 1244; Metazoa - 10; Fungi - 100; Plants - 134; Viruses - 0; Other Eukaryotes - 925 (source: NCBI BLink).  protein_id AT2G38230.1p  transcript_id AT2G38230.1  protein_id AT2G38230.1p  transcript_id AT2G38230.1  
At2g38240	chr2:016014188	0.0	C/16014188-16014666,16013250-16013583,16012723-16012971	AT2G38240.1  CDS  gene_syn F16M14.17, F16M14_17  go_function oxidoreductase activity|GO:0016491||IEA  go_process response to salt stress|GO:0009651|11351099|IEP  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: response to salt stress; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT5G05600.1); Has 6057 Blast hits to 6006 proteins in 689 species: Archae - 0; Bacteria - 722; Metazoa - 119; Fungi - 673; Plants - 3129; Viruses - 0; Other Eukaryotes - 1414 (source: NCBI BLink).  protein_id AT2G38240.1p  transcript_id AT2G38240.1  protein_id AT2G38240.1p  transcript_id AT2G38240.1  
At2g38250	chr2:016018384	0.0	W/16018384-16018689,16018937-16019500	AT2G38250.1  CDS  gene_syn F16M14.18, F16M14_18  go_component nucleolus|GO:0005730|15496452|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product DNA-binding protein-related  note DNA-binding protein-related; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleolus; EXPRESSED IN: stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT5G01380.1); Has 3330 Blast hits to 2092 proteins in 187 species: Archae - 0; Bacteria - 51; Metazoa - 1544; Fungi - 342; Plants - 315; Viruses - 5; Other Eukaryotes - 1073 (source: NCBI BLink).  protein_id AT2G38250.1p  transcript_id AT2G38250.1  protein_id AT2G38250.1p  transcript_id AT2G38250.1  
At2g38255	chr2:016024805	0.0	C/16024805-16024825,16024635-16024718,16024365-16024514,16023972-16024136,16023706-16023759,16022377-16022526,16021750-16022127	AT2G38255.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G27320.1); Has 398 Blast hits to 382 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 10; Plants - 384; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G38255.1p  transcript_id AT2G38255.1  protein_id AT2G38255.1p  transcript_id AT2G38255.1  
At2g38260	chr2:016025429	0.0	C/16025429-16028594	AT2G38260.1  pseudogenic_transcript  pseudo  gene_syn F16M14.19  note pseudogene, similar to carboxyl transferase alpha subunit, similar to GB:U34392, however, a substitution at base 93910 in our sequence causes a stop codon in the coding region. We sequenced four clones in that region which all confirm the substitution.; blastp match of 73% identity and 2.6e-115 P-value to GP|9621818|gb|AAF89548.1|AF165158_1|AF165158 carboxyl transferase alpha subunit {Glycine max}  
At2g38270	chr2:016032674	0.0	C/16032674-16033054,16031347-16031847	AT2G38270.1  CDS  gene_syn ATGRX2, CAX-INTERACTING PROTEIN 2, CXIP2, F16M14.20, F16M14_20, GLUTAREDOXIN  gene CXIP2  function Encodes protein homologous to CXIP1. CXIP1 is a PICOT domain containing protein interacts with CAX1, a high capacity calcium transporter. However, CXP2 does not interact with CAX1 and only moderately activates another calcium transporter CAX4.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  go_process cation transport|GO:0006812|12480930|IDA  product CXIP2 (CAX-INTERACTING PROTEIN 2); electron carrier/ protein disulfide oxidoreductase  note CAX-INTERACTING PROTEIN 2 (CXIP2); FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cation transport; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336), Glutaredoxin-related protein (InterPro:IPR004480); BEST Arabidopsis thaliana protein match is: CXIP1 (CAX INTERACTING PROTEIN 1); antiporter/ glutathione disulfide oxidoreductase (TAIR:AT3G54900.1); Has 4427 Blast hits to 4289 proteins in 850 species: Archae - 12; Bacteria - 1600; Metazoa - 438; Fungi - 184; Plants - 281; Viruses - 0; Other Eukaryotes - 1912 (source: NCBI BLink).  protein_id AT2G38270.1p  transcript_id AT2G38270.1  protein_id AT2G38270.1p  transcript_id AT2G38270.1  
At2g38280	chr2:016038439	0.0	C/16038439-16038793,16038141-16038331,16037891-16038056,16037379-16037557,16037250-16037301,16037004-16037131,16036744-16036923,16036593-16036660,16036256-16036398,16036093-16036154,16035511-16035624,16035236-16035376,16034987-16035139,16034853-16034906,16034661-16034771,16034414-16034587,16034110-16034190,16033919-16034017,16033767-16033835	AT2G38280.1  CDS  gene_syn ADENOSINE 5 -MONOPHOSPHATE DEAMINASE, ATAMPD, EMBRYONIC FACTOR1, F16M14.21, F16M14_21, FAC1  gene FAC1  function Encodes a protein with in vitro AMP deaminase activity that is involved in embryogenesis. Homozygous mutant embryos fail to develop past the zygote stage.  go_component nucleus|GO:0005634|18433157|IDA  go_component microsome|GO:0005792|16543243|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process purine ribonucleoside monophosphate biosynthetic process|GO:0009168||ISS  go_process embryonic development ending in seed dormancy|GO:0009793|15918887|IMP  go_function AMP deaminase activity|GO:0003876|15918887|IGI  go_function AMP deaminase activity|GO:0003876||ISS  product FAC1 (EMBRYONIC FACTOR1); AMP deaminase  note EMBRYONIC FACTOR1 (FAC1); FUNCTIONS IN: AMP deaminase activity; INVOLVED IN: embryonic development ending in seed dormancy, purine ribonucleoside monophosphate biosynthetic process; LOCATED IN: cytosol, nucleus, microsome; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adenosine/AMP deaminase (InterPro:IPR001365), Adenosine/AMP deaminase active site (InterPro:IPR006650), AMP deaminase (InterPro:IPR006329); Has 824 Blast hits to 765 proteins in 203 species: Archae - 0; Bacteria - 101; Metazoa - 312; Fungi - 174; Plants - 36; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink).  protein_id AT2G38280.1p  transcript_id AT2G38280.1  protein_id AT2G38280.1p  transcript_id AT2G38280.1  
At2g38280	chr2:016038439	0.0	C/16038439-16038793,16038141-16038331,16037891-16038056,16037379-16037557,16037250-16037301,16037004-16037131,16036744-16036923,16036593-16036660,16036256-16036398,16036093-16036154,16035511-16035624,16035236-16035376,16034987-16035139,16034853-16034906,16034661-16034771,16034414-16034587,16034110-16034190,16033919-16034017,16033767-16033835	AT2G38280.2  CDS  gene_syn ADENOSINE 5 -MONOPHOSPHATE DEAMINASE, ATAMPD, EMBRYONIC FACTOR1, F16M14.21, F16M14_21, FAC1  gene FAC1  function Encodes a protein with in vitro AMP deaminase activity that is involved in embryogenesis. Homozygous mutant embryos fail to develop past the zygote stage.  go_component nucleus|GO:0005634|18433157|IDA  go_component microsome|GO:0005792|16543243|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process purine ribonucleoside monophosphate biosynthetic process|GO:0009168||ISS  go_process embryonic development ending in seed dormancy|GO:0009793|15918887|IMP  go_function AMP deaminase activity|GO:0003876|15918887|IGI  go_function AMP deaminase activity|GO:0003876||ISS  product FAC1 (EMBRYONIC FACTOR1); AMP deaminase  note EMBRYONIC FACTOR1 (FAC1); FUNCTIONS IN: AMP deaminase activity; INVOLVED IN: embryonic development ending in seed dormancy, purine ribonucleoside monophosphate biosynthetic process; LOCATED IN: cytosol, nucleus, microsome; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adenosine/AMP deaminase (InterPro:IPR001365), Adenosine/AMP deaminase active site (InterPro:IPR006650), AMP deaminase (InterPro:IPR006329); Has 824 Blast hits to 765 proteins in 203 species: Archae - 0; Bacteria - 101; Metazoa - 312; Fungi - 174; Plants - 36; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink).  protein_id AT2G38280.2p  transcript_id AT2G38280.2  protein_id AT2G38280.2p  transcript_id AT2G38280.2  
At2g38290	chr2:016041610	0.0	C/16041610-16041864,16040516-16040801,16040274-16040377,16039672-16040106	AT2G38290.2  CDS  gene_syn AMMONIUM TRANSPORTER 2, AMMONIUM TRANSPORTER 2;1, AMT2;1, ATAMT2, F16M14.22, F16M14_22  gene ATAMT2  function encodes a high-affinity ammonium transporter, which is expressed in shoot and root. Expression in root and shoot is under nitrogen and carbon dioxide regulation, respectively.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|12481062|IDA  go_process cellular response to nitrogen starvation|GO:0006995|12481062|IEP  go_process response to nematode|GO:0009624|16478044|IEP  go_process ammonium transport|GO:0015696|12481062|TAS  go_function ammonium transmembrane transporter activity|GO:0008519||ISS  go_function high affinity secondary active ammonium transmembrane transporter activity|GO:0015398|12481062|IDA  product ATAMT2 (AMMONIUM TRANSPORTER 2); ammonium transmembrane transporter/ high affinity secondary active ammonium transmembrane transporter  note AMMONIUM TRANSPORTER 2 (ATAMT2); FUNCTIONS IN: high affinity secondary active ammonium transmembrane transporter activity, ammonium transmembrane transporter activity; INVOLVED IN: ammonium transport, response to nematode, cellular response to nitrogen starvation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ammonium transporter (InterPro:IPR001905), Blood group Rhesus C/E and D polypeptide (InterPro:IPR002229), Ammonium transporter, conserved site (InterPro:IPR018047), Rh-like protein/ammonium transporter (InterPro:IPR010256); BEST Arabidopsis thaliana protein match is: ATAMT1;2 (AMMONIUM TRANSPORTER 1;2); ammonium transmembrane transporter (TAIR:AT1G64780.1); Has 7474 Blast hits to 7472 proteins in 1164 species: Archae - 149; Bacteria - 2573; Metazoa - 496; Fungi - 295; Plants - 269; Viruses - 0; Other Eukaryotes - 3692 (source: NCBI BLink).  protein_id AT2G38290.2p  transcript_id AT2G38290.2  protein_id AT2G38290.2p  transcript_id AT2G38290.2  
At2g38290	chr2:016041980	0.0	C/16041980-16042291,16041610-16041900,16040516-16040801,16040274-16040377,16039672-16040106	AT2G38290.1  CDS  gene_syn AMMONIUM TRANSPORTER 2, AMMONIUM TRANSPORTER 2;1, AMT2;1, ATAMT2, F16M14.22, F16M14_22  gene ATAMT2  function encodes a high-affinity ammonium transporter, which is expressed in shoot and root. Expression in root and shoot is under nitrogen and carbon dioxide regulation, respectively.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|12481062|IDA  go_process cellular response to nitrogen starvation|GO:0006995|12481062|IEP  go_process response to nematode|GO:0009624|16478044|IEP  go_process ammonium transport|GO:0015696|12481062|TAS  go_function ammonium transmembrane transporter activity|GO:0008519||ISS  go_function high affinity secondary active ammonium transmembrane transporter activity|GO:0015398|12481062|IDA  product ATAMT2 (AMMONIUM TRANSPORTER 2); ammonium transmembrane transporter/ high affinity secondary active ammonium transmembrane transporter  note AMMONIUM TRANSPORTER 2 (ATAMT2); FUNCTIONS IN: high affinity secondary active ammonium transmembrane transporter activity, ammonium transmembrane transporter activity; INVOLVED IN: ammonium transport, response to nematode, cellular response to nitrogen starvation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ammonium transporter (InterPro:IPR001905), Blood group Rhesus C/E and D polypeptide (InterPro:IPR002229), Ammonium transporter, conserved site (InterPro:IPR018047), Rh-like protein/ammonium transporter (InterPro:IPR010256); BEST Arabidopsis thaliana protein match is: AMT1;1 (AMMONIUM TRANSPORTER 1;1); ammonium transmembrane transporter (TAIR:AT4G13510.1); Has 7673 Blast hits to 7669 proteins in 1168 species: Archae - 149; Bacteria - 2587; Metazoa - 502; Fungi - 296; Plants - 273; Viruses - 0; Other Eukaryotes - 3866 (source: NCBI BLink).  protein_id AT2G38290.1p  transcript_id AT2G38290.1  protein_id AT2G38290.1p  transcript_id AT2G38290.1  
At2g38300	chr2:016045445	0.0	C/16045445-16045679,16045217-16045293,16045057-16045093,16044858-16044969,16044175-16044736	AT2G38300.1  CDS  gene_syn F16M14.25  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product DNA binding / transcription factor  note DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.10 ten leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT2G40260.1); Has 922 Blast hits to 920 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 24; Fungi - 4; Plants - 867; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT2G38300.1p  transcript_id AT2G38300.1  protein_id AT2G38300.1p  transcript_id AT2G38300.1  
At2g38304	chr2:016047924	0.0	C/16047924-16048115	AT2G38304.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G38304.1p  transcript_id AT2G38304.1  protein_id AT2G38304.1p  transcript_id AT2G38304.1  
At2g38310	chr2:016050251	0.0	W/16050251-16050874	AT2G38310.1  CDS  gene_syn T19C21.20, T19C21_20  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05440.1); Has 225 Blast hits to 221 proteins in 31 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 222; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G38310.1p  transcript_id AT2G38310.1  protein_id AT2G38310.1p  transcript_id AT2G38310.1  
At2g38320	chr2:016055488	0.0	W/16055488-16055828,16056372-16056549,16056839-16057035,16057115-16057273,16057517-16057874	AT2G38320.1  CDS  gene_syn T19C21.19, T19C21_19  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01620.2); Has 716 Blast hits to 702 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 714; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G38320.1p  transcript_id AT2G38320.1  protein_id AT2G38320.1p  transcript_id AT2G38320.1  
At2g38325	chr2:016061954	0.0	W/16061954-16062060	AT2G38325.1  miRNA  gene_syn MICRORNA 390, MICRORNA390A, MIR390, MIR390A  gene MIR390A  function Encodes a microRNA that targets the TAS3 family of tasiRNA-generating transcripts. Cleavage of TAS3 transcripts by miR390 initiates processing of these transcripts in a 21-nucleotide register. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: AAGCUCAGGAGGGAUAGCGCC  go_process gene silencing by miRNA|GO:0035195|15851028|IDA  product MIR390A (MICRORNA390A); miRNA  transcript_id AT2G38325.1  
At2g38330	chr2:016064571	0.0	W/16064571-16064785,16064866-16064975,16065062-16065214,16065318-16065439,16065542-16065677,16065830-16065926,16066025-16066125,16066204-16066367,16066508-16066579,16066668-16066784,16066866-16066961,16067048-16067169,16067258-16067318	AT2G38330.1  CDS  gene_syn T19C21.18, T19C21_18  go_component chloroplast|GO:0009507||IEA  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: drug transporter activity, antiporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: antiporter/ drug transporter (TAIR:AT4G38380.1); Has 9315 Blast hits to 9273 proteins in 1205 species: Archae - 209; Bacteria - 6486; Metazoa - 73; Fungi - 95; Plants - 332; Viruses - 0; Other Eukaryotes - 2120 (source: NCBI BLink).  protein_id AT2G38330.1p  transcript_id AT2G38330.1  protein_id AT2G38330.1p  transcript_id AT2G38330.1  
At2g38340	chr2:016067447	0.0	C/16067447-16068181	AT2G38340.1  CDS  gene_syn T19C21.17, T19C21_17  function encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative (DRE2B)  note AP2 domain-containing transcription factor, putative (DRE2B); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: DREB2A; DNA binding / transcription activator/ transcription factor (TAIR:AT5G05410.2); Has 3314 Blast hits to 3309 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3307; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT2G38340.1p  transcript_id AT2G38340.1  protein_id AT2G38340.1p  transcript_id AT2G38340.1  
At2g38350	chr2:016068341	0.0	W/16068341-16068391,16069069-16069308	AT2G38350.1  CDS  gene_syn T19C21.16, T19C21_16  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G38350.1p  transcript_id AT2G38350.1  protein_id AT2G38350.1p  transcript_id AT2G38350.1  
At2g38360	chr2:016069840	0.0	C/16069840-16070502	AT2G38360.1  CDS  gene_syn PRA1.B4, PRENYLATED RAB ACCEPTOR 1.B4, T19C21.15, T19C21_15  gene PRA1.B4  go_component endoplasmic reticulum|GO:0005783|18583532|IDA  go_process vesicle-mediated transport|GO:0016192|18583532|IDA  go_function molecular_function|GO:0003674||ND  product PRA1.B4 (PRENYLATED RAB ACCEPTOR 1.B4)  note PRENYLATED RAB ACCEPTOR 1.B4 (PRA1.B4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: PRA1.B1 (PRENYLATED RAB ACCEPTOR 1.B1) (TAIR:AT3G56110.1); Has 342 Blast hits to 342 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 35; Plants - 176; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT2G38360.1p  transcript_id AT2G38360.1  protein_id AT2G38360.1p  transcript_id AT2G38360.1  
At2g38365	chr2:016070972	0.0	W/16070972-16071212,16071300-16071421	AT2G38365.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G38365.1p  transcript_id AT2G38365.1  protein_id AT2G38365.1p  transcript_id AT2G38365.1  
At2g38370	chr2:016073989	0.0	C/16073989-16074168,16072184-16073572	AT2G38370.1  CDS  gene_syn T19C21.14, T19C21_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51720.1); Has 31337 Blast hits to 19991 proteins in 1437 species: Archae - 507; Bacteria - 5358; Metazoa - 13888; Fungi - 2274; Plants - 1558; Viruses - 101; Other Eukaryotes - 7651 (source: NCBI BLink).  protein_id AT2G38370.1p  transcript_id AT2G38370.1  protein_id AT2G38370.1p  transcript_id AT2G38370.1  
At2g38380	chr2:016076443	0.0	W/16076443-16076670,16076812-16077003,16077085-16077253,16077854-16078314	AT2G38380.1  CDS  gene_syn T19C21.13, T19C21_13  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase 22 (PER22) (P22) (PRXEA) / basic peroxidase E  note peroxidase 22 (PER22) (P22) (PRXEA) / basic peroxidase E; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to salt stress; LOCATED IN: plant-type cell wall; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT2G38390.1); Has 2853 Blast hits to 2839 proteins in 204 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 59; Plants - 2759; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT2G38380.1p  transcript_id AT2G38380.1  protein_id AT2G38380.1p  transcript_id AT2G38380.1  
At2g38390	chr2:016079726	0.0	W/16079726-16079953,16080097-16080288,16080387-16080555,16080921-16081381	AT2G38390.1  CDS  gene_syn T19C21.12, T19C21_12  go_component endomembrane system|GO:0012505||IEA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase 22 (PER22) (P22) (PRXEA) / basic peroxidase E (TAIR:AT2G38380.1); Has 2823 Blast hits to 2809 proteins in 200 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 47; Plants - 2744; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT2G38390.1p  transcript_id AT2G38390.1  protein_id AT2G38390.1p  transcript_id AT2G38390.1  
At2g38400	chr2:016083779	0.0	W/16083779-16084018,16084372-16084917,16085000-16085176,16085262-16085487,16085571-16085684,16085765-16085851,16085931-16085974	AT2G38400.1  CDS  gene_syn AGT3, ALANINE:GLYOXYLATE AMINOTRANSFERASE 2 HOMOLOG, ALANINE:GLYOXYLATE AMINOTRANSFERASE 3, T19C21.11, T19C21_11  gene AGT3  function alanine:glyoxylate aminotransferase 2 homolog (AGT3) mRNA,  go_function catalytic activity|GO:0003824||IEA  go_function transaminase activity|GO:0008483||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_function alanine-glyoxylate transaminase activity|GO:0008453||ISS  product AGT3 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 3); alanine-glyoxylate transaminase/ catalytic/ pyridoxal phosphate binding / transaminase  note ALANINE:GLYOXYLATE AMINOTRANSFERASE 3 (AGT3); FUNCTIONS IN: pyridoxal phosphate binding, transaminase activity, catalytic activity, alanine-glyoxylate transaminase activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase class-III (InterPro:IPR005814), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putative (TAIR:AT3G08860.1); Has 24519 Blast hits to 24511 proteins in 1633 species: Archae - 419; Bacteria - 12425; Metazoa - 557; Fungi - 540; Plants - 228; Viruses - 14; Other Eukaryotes - 10336 (source: NCBI BLink).  protein_id AT2G38400.1p  transcript_id AT2G38400.1  protein_id AT2G38400.1p  transcript_id AT2G38400.1  
At2g38410	chr2:016089929	0.0	C/16089929-16090047,16089628-16089706,16089428-16089526,16089235-16089348,16088608-16088897,16088422-16088503,16088255-16088340,16087849-16088142,16086912-16087764	AT2G38410.1  CDS  gene_syn T19C21.10, T19C21_10  go_component plasma membrane|GO:0005886|17317660|IDA  go_process intracellular protein transport|GO:0006886||IEA  go_component Golgi stack|GO:0005795||ISS  go_process intracellular protein transport|GO:0006886||ISS  go_process intra-Golgi vesicle-mediated transport|GO:0006891||ISS  go_function protein transporter activity|GO:0008565||ISS  product VHS domain-containing protein / GAT domain-containing protein  note VHS domain-containing protein / GAT domain-containing protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), GAT (InterPro:IPR004152), VHS subgroup (InterPro:IPR018205), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: VHS domain-containing protein / GAT domain-containing protein (TAIR:AT5G01760.1); Has 39746 Blast hits to 20385 proteins in 932 species: Archae - 10; Bacteria - 1893; Metazoa - 15146; Fungi - 6039; Plants - 3641; Viruses - 380; Other Eukaryotes - 12637 (source: NCBI BLink).  protein_id AT2G38410.1p  transcript_id AT2G38410.1  protein_id AT2G38410.1p  transcript_id AT2G38410.1  
At2g38420	chr2:016091120	0.0	W/16091120-16092454	AT2G38420.1  CDS  gene_syn T19C21.9, T19C21_9  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G64320.1); Has 11671 Blast hits to 4113 proteins in 157 species: Archae - 3; Bacteria - 20; Metazoa - 337; Fungi - 320; Plants - 10463; Viruses - 0; Other Eukaryotes - 528 (source: NCBI BLink).  protein_id AT2G38420.1p  transcript_id AT2G38420.1  protein_id AT2G38420.1p  transcript_id AT2G38420.1  
At2g38430	chr2:016094510	0.0	C/16094510-16094810,16094173-16094341,16093931-16094087,16093766-16093846,16093491-16093598,16093127-16093396,16092950-16093045	AT2G38430.1  CDS  gene_syn T19C21.8, T19C21_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54310.1); Has 18 Blast hits to 17 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G38430.1p  transcript_id AT2G38430.1  protein_id AT2G38430.1p  transcript_id AT2G38430.1  
At2g38440	chr2:016095550	0.0	W/16095550-16095704,16095883-16096046,16096130-16096253,16096342-16096471,16096657-16096718,16096841-16100156,16100237-16100323,16100414-16100521,16100798-16100851	AT2G38440.1  CDS  gene_syn ATSCAR2, DIS3, IRREGULAR TRICHOME BRANCH1, ITB1, SCAR HOMOLOG 2, SCAR2, T19C21.7, T19C21_7, WAVE4  gene SCAR2  function Encodes a subunit of the WAVE complex. The WAVE complex is required for activation of ARP2/3 complex which functions in actin microfilament nucleation and branching. Mutations cause defects in both the actin and microtubule cytoskeletons that result in aberrant epidermal cell expansion. itb1 mutants showed irregularities in trichome branch positioning and expansion. The SHD domain of this protein binds to BRK1 and overexpression of the SHD domain results in a dominant negative phenotype.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytoplasm|GO:0005737|17267444|IDA  go_component SCAR complex|GO:0031209|15659634|TAS  go_component SCAR complex|GO:0031209|16006582|ISS  go_component SCAR complex|GO:0031209|18424615|TAS  go_process trichome morphogenesis|GO:0010090|15653407|TAS  go_process trichome morphogenesis|GO:0010090|17267444|IMP  go_process trichome branching|GO:0010091|16006582|IMP  go_process cell-cell adhesion|GO:0016337|15659634|IMP  go_process actin cytoskeleton organization|GO:0030036|16006582|IMP  go_process actin nucleation|GO:0045010|15653407|TAS  go_process positive regulation of actin nucleation|GO:0051127|15659634|ISS  go_process positive regulation of actin nucleation|GO:0051127|18424615|IMP  go_function molecular_function|GO:0003674||ND  product SCAR2 (SCAR HOMOLOG 2)  note SCAR HOMOLOG 2 (SCAR2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 6 processes; LOCATED IN: SCAR complex, plasma membrane, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding WH2 (InterPro:IPR003124); BEST Arabidopsis thaliana protein match is: ATSCAR4 (TAIR:AT5G01730.1); Has 4658 Blast hits to 1965 proteins in 264 species: Archae - 22; Bacteria - 2416; Metazoa - 908; Fungi - 519; Plants - 135; Viruses - 0; Other Eukaryotes - 658 (source: NCBI BLink).  protein_id AT2G38440.1p  transcript_id AT2G38440.1  protein_id AT2G38440.1p  transcript_id AT2G38440.1  
At2g38450	chr2:016102016	0.0	W/16102016-16102324,16102483-16102552,16102646-16102683	AT2G38450.1  CDS  gene_syn T19C21.6, T19C21_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05360.1); Has 45 Blast hits to 45 proteins in 14 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G38450.1p  transcript_id AT2G38450.1  protein_id AT2G38450.1p  transcript_id AT2G38450.1  
At2g38460	chr2:016103603	0.0	W/16103603-16103760,16103912-16104259,16104363-16104845,16104948-16105119,16105294-16105431,16105529-16105639,16105766-16105930	AT2G38460.1  CDS  gene_syn ATIREG1, IRON-REGULATED PROTEIN 1, T19C21.5, T19C21_5  gene ATIREG1  go_component integral to membrane|GO:0016021||IEA  go_process iron ion transport|GO:0006826||IEA  go_function transporter activity|GO:0005215||ISS  product ATIREG1 (IRON-REGULATED PROTEIN 1); transporter  note IRON-REGULATED PROTEIN 1 (ATIREG1); FUNCTIONS IN: transporter activity; INVOLVED IN: iron ion transport; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferroportin1 (InterPro:IPR009716), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ATIREG2 (IRON-REGULATED PROTEIN 2); nickel ion transmembrane transporter (TAIR:AT5G03570.1); Has 238 Blast hits to 192 proteins in 57 species: Archae - 0; Bacteria - 2; Metazoa - 134; Fungi - 45; Plants - 41; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT2G38460.1p  transcript_id AT2G38460.1  protein_id AT2G38460.1p  transcript_id AT2G38460.1  
At2g38465	chr2:016106682	0.0	C/16106682-16106810,16106393-16106518	AT2G38465.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; Has 10 Blast hits to 10 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G38465.1p  transcript_id AT2G38465.1  protein_id AT2G38465.1p  transcript_id AT2G38465.1  
At2g38470	chr2:016108476	0.0	W/16108476-16108718,16108968-16109174,16109244-16109776,16109867-16110028,16110125-16110539	AT2G38470.1  CDS  gene_syn ATWRKY33, T19C21.4, T19C21_4, WRKY33  gene WRKY33  function Member of the plant WRKY transcription factor family. Regulates the antagonistic relationship between defense pathways mediating responses to P. syringae and necrotrophic fungal pathogens. Located in nucleus. Involved in response to various abiotic stresses - especially salt stress.  go_component nucleus|GO:0005634|17059405|IDA  go_component nucleus|GO:0005634|18839316|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_process response to osmotic stress|GO:0006970|18839316|IEP  go_process response to heat|GO:0009408|18839316|IEP  go_process response to cold|GO:0009409|18839316|IEP  go_process response to water deprivation|GO:0009414|18839316|IEP  go_process response to salt stress|GO:0009651|18839316|IMP  go_process camalexin biosynthetic process|GO:0010120|18650934|IMP  go_process response to chitin|GO:0010200|17722694|IEP  go_process defense response to bacterium|GO:0042742|17059405|IMP  go_process defense response to fungus|GO:0050832|17059405|IMP  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|17059405|IDA  go_function transcription factor activity|GO:0003700||ISS  product WRKY33; transcription factor  note WRKY33; FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 10 processes; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY4; DNA binding / transcription factor (TAIR:AT1G13960.2); Has 5341 Blast hits to 3123 proteins in 217 species: Archae - 2; Bacteria - 101; Metazoa - 474; Fungi - 144; Plants - 3289; Viruses - 9; Other Eukaryotes - 1322 (source: NCBI BLink).  protein_id AT2G38470.1p  transcript_id AT2G38470.1  protein_id AT2G38470.1p  transcript_id AT2G38470.1  
At2g38480	chr2:016111444	0.0	C/16111444-16111694,16111233-16111356,16110960-16111151	AT2G38480.1  CDS  gene_syn T19C21.23  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane protein, putative  note integral membrane protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36330.1); Has 109 Blast hits to 109 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G38480.1p  transcript_id AT2G38480.1  protein_id AT2G38480.1p  transcript_id AT2G38480.1  
At2g38490	chr2:016113909	0.0	C/16113909-16115276	AT2G38490.1  CDS  gene_syn CBL-INTERACTING PROTEIN KINASE 22, CIPK22, SNF1-RELATED PROTEIN KINASE 3.19, SnRK3.19, T19C21.2  gene CIPK22  function member of AtCIPKs  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product CIPK22 (CBL-INTERACTING PROTEIN KINASE 22); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note CBL-INTERACTING PROTEIN KINASE 22 (CIPK22); FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: signal transduction, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), NAF/FISL domain (InterPro:IPR018451), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G01820.1); Has 94788 Blast hits to 93156 proteins in 2924 species: Archae - 65; Bacteria - 8451; Metazoa - 40931; Fungi - 8610; Plants - 18078; Viruses - 460; Other Eukaryotes - 18193 (source: NCBI BLink).  protein_id AT2G38490.1p  transcript_id AT2G38490.1  protein_id AT2G38490.1p  transcript_id AT2G38490.1  
At2g38500	chr2:016118533	0.0	C/16118533-16119041,16117942-16118266,16117610-16117846	AT2G38500.1  CDS  gene_syn T6A23.30  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: DTA4 (DOWNSTREAM TARGET OF AGL15-4) (TAIR:AT1G79760.1); Has 26 Blast hits to 26 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G38500.1p  transcript_id AT2G38500.1  protein_id AT2G38500.1p  transcript_id AT2G38500.1  
At2g38510	chr2:016123985	0.0	W/16123985-16125445	AT2G38510.1  CDS  gene_syn T6A23.29, T6A23_29  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020|11152613|ISS  go_function transporter activity|GO:0005215||ISS  product MATE efflux protein-related  note MATE efflux protein-related; FUNCTIONS IN: antiporter activity, drug transporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: ZF14; antiporter/ drug transporter/ transporter (TAIR:AT1G58340.1); Has 6541 Blast hits to 6492 proteins in 1098 species: Archae - 155; Bacteria - 4193; Metazoa - 121; Fungi - 210; Plants - 683; Viruses - 0; Other Eukaryotes - 1179 (source: NCBI BLink).  protein_id AT2G38510.1p  transcript_id AT2G38510.1  protein_id AT2G38510.1p  transcript_id AT2G38510.1  
At2g38520	chr2:016125919	0.0	W/16125919-16126578	AT2G38520.1  mRNA_TE_gene  pseudo  gene_syn T6A23.28, T6A23_28  note Transposable element gene, copia-like retrotransposon family, has a 8.4e-60 P-value blast match to dbj|BAA78427.1| polyprotein (AtRE2-2) (Arabidopsis thaliana) (Ty1_Copia-element)  
At2g38530	chr2:016128481	0.0	W/16128481-16128827,16128939-16128948	AT2G38530.1  CDS  gene_syn LIPID TRANSFER PROTEIN, LIPID TRANSFER PROTEIN 2, LP2, LTP2, T6A23.27, T6A23_27  gene LTP2  function Involved in lipid transfer between membranes. Belongs to a family of Lipid transfer proteins. Sequence similarity to other plant/Arabidopsis LPT genes but highest similarity to LPT1. Stress and pathogen-inducible motifs found in the upstream region. Expressed in flower, leaves and siliques but absent in roots. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.  go_function lipid binding|GO:0008289||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_process phospholipid transfer to membrane|GO:0006649|10940464|NAS  product LTP2 (LIPID TRANSFER PROTEIN 2); lipid binding  note LIPID TRANSFER PROTEIN 2 (LTP2); FUNCTIONS IN: lipid binding; INVOLVED IN: phospholipid transfer to membrane; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: LP1; calmodulin binding (TAIR:AT2G38540.1); Has 841 Blast hits to 841 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 838; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G38530.1p  transcript_id AT2G38530.1  protein_id AT2G38530.1p  transcript_id AT2G38530.1  
At2g38540	chr2:016130418	0.0	W/16130418-16130764,16130884-16130893	AT2G38540.1  CDS  gene_syn ARABIDOPSIS THALIANA LIPID TRANSFER PROTEIN 1, ATLTP1, LIPID TRANSFER PROTEIN 1, LP1, LTP1, T6A23.26, T6A23_26  gene LP1  function Non-specific lipid transfer protein. Binds calmodulin in a Ca2+-independent manner. Localized to the cell wall. Specifically expressed in L1 epidermal layer. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.  go_component apoplast|GO:0048046|18538804|IDA  go_component plant-type cell wall|GO:0009505|8405465|IDA  go_process lipid transport|GO:0006869|15757661|TAS  go_process lipid transport|GO:0006869|8029357|TAS  go_function calmodulin binding|GO:0005516|15757661|IDA  product LP1; calmodulin binding  note LP1; FUNCTIONS IN: calmodulin binding; INVOLVED IN: lipid transport; LOCATED IN: apoplast, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: LTP2 (LIPID TRANSFER PROTEIN 2); lipid binding (TAIR:AT2G38530.1); Has 875 Blast hits to 874 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 871; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G38540.1p  transcript_id AT2G38540.1  protein_id AT2G38540.1p  transcript_id AT2G38540.1  
At2g38544	chr2:016131508	0.0	W/16131508-16131648	AT2G38544.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G38544.1p  transcript_id AT2G38544.1  protein_id AT2G38544.1p  transcript_id AT2G38544.1  
At2g38550	chr2:016132178	0.0	W/16132178-16132420,16132667-16133057,16133143-16133310,16133671-16133720,16133810-16133847,16134112-16134229	AT2G38550.1  CDS  gene_syn T6A23.25, T6A23_25  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_component chloroplast inner membrane|GO:0009706|12766230|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0136, Transmembrane (InterPro:IPR005349); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57280.1); Has 94 Blast hits to 92 proteins in 26 species: Archae - 0; Bacteria - 4; Metazoa - 3; Fungi - 4; Plants - 69; Viruses - 7; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT2G38550.1p  transcript_id AT2G38550.1  protein_id AT2G38550.1p  transcript_id AT2G38550.1  
At2g38560	chr2:016134802	0.0	W/16134802-16134966,16135348-16136319	AT2G38560.1  CDS  gene_syn T6A23.24, T6A23_24, TFIIS, TRANSCRIPT ELONGATION FACTOR IIS  gene TFIIS  function Encodes RNA polymerase II transcript elongation factor TFIIS. Complements yeast TFIIS mutation. Mutant plants display essentially normal development, but they flower slightly earlier than the wild type and show clearly reduced seed dormancy.  go_component nucleus|GO:0005634|19150360|IDA  go_component nucleus|GO:0005634||ISS  go_process RNA elongation|GO:0006354||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process negative regulation of flower development|GO:0009910|19150360|IMP  go_process seed dormancy|GO:0010162|19150360|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  go_function RNA polymerase II transcription elongation factor activity|GO:0016944|19150360|IMP  product TFIIS (TRANSCRIPT ELONGATION FACTOR IIS); DNA binding / RNA polymerase II transcription elongation factor/ transcription factor  note TRANSCRIPT ELONGATION FACTOR IIS (TFIIS); FUNCTIONS IN: transcription factor activity, RNA polymerase II transcription elongation factor activity, DNA binding; INVOLVED IN: negative regulation of flower development, RNA elongation, regulation of transcription, DNA-dependent, seed dormancy; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, TFIIS-type (InterPro:IPR001222), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), Transcription elongation factor, TFIIS/CRSP70, N-terminal (InterPro:IPR014765), Transcription elongation factor S-II, central region (InterPro:IPR003618), Transcription elongation factor S-IIM (InterPro:IPR017890), TFIIS N-terminal (InterPro:IPR017923), Transcription elongation factor, IIS (InterPro:IPR016492), Transcription elongation factor, TFIIS (InterPro:IPR006289), Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal (InterPro:IPR010990); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G42730.1); Has 1387 Blast hits to 1367 proteins in 213 species: Archae - 36; Bacteria - 2; Metazoa - 591; Fungi - 234; Plants - 134; Viruses - 42; Other Eukaryotes - 348 (source: NCBI BLink).  protein_id AT2G38560.1p  transcript_id AT2G38560.1  protein_id AT2G38560.1p  transcript_id AT2G38560.1  
At2g38570	chr2:016137971	0.0	C/16137971-16138417,16137780-16137860,16137614-16137688,16137486-16137530,16137309-16137398,16137084-16137185,16136854-16137000	AT2G38570.1  CDS  gene_syn T6A23.23, T6A23_23  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PRC-barrel-like (InterPro:IPR011033); Has 29 Blast hits to 29 proteins in 13 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G38570.1p  transcript_id AT2G38570.1  protein_id AT2G38570.1p  transcript_id AT2G38570.1  
At2g38580	chr2:016138838	0.0	W/16138838-16139038,16139384-16139425,16139754-16139816,16139927-16139989,16140084-16140146,16140249-16140311,16140406-16140468,16140564-16140626,16140726-16140788,16141079-16141141,16141228-16141290,16141401-16141460,16141636-16141746,16141819-16141911,16141997-16142371	AT2G38580.1  CDS  gene_syn T6A23.22, T6A23_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65010.1); Has 59428 Blast hits to 34448 proteins in 1513 species: Archae - 407; Bacteria - 6232; Metazoa - 29606; Fungi - 3999; Plants - 1722; Viruses - 205; Other Eukaryotes - 17257 (source: NCBI BLink).  protein_id AT2G38580.1p  transcript_id AT2G38580.1  protein_id AT2G38580.1p  transcript_id AT2G38580.1  
At2g38590	chr2:016142897	0.0	W/16142897-16144171	AT2G38590.1  CDS  gene_syn T6A23.21, T6A23_21  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G33290.1); Has 760 Blast hits to 732 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 758; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G38590.1p  transcript_id AT2G38590.1  protein_id AT2G38590.1p  transcript_id AT2G38590.1  
At2g38600	chr2:016145907	0.0	W/16145907-16146271,16146378-16146590,16146680-16146857	AT2G38600.1  CDS  gene_syn T6A23.20, T6A23_20  go_component endomembrane system|GO:0012505||IEA  go_function acid phosphatase activity|GO:0003993||IEA  go_process biological_process|GO:0008150||ND  go_function acid phosphatase activity|GO:0003993||ISS  product acid phosphatase class B family protein  note acid phosphatase class B family protein; FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519), Vegetative storage protein/acid phosphatase (InterPro:IPR014403), Acid phosphatase, plant (InterPro:IPR010028); BEST Arabidopsis thaliana protein match is: acid phosphatase, putative (TAIR:AT4G25150.1); Has 458 Blast hits to 458 proteins in 101 species: Archae - 0; Bacteria - 159; Metazoa - 0; Fungi - 0; Plants - 236; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT2G38600.1p  transcript_id AT2G38600.1  protein_id AT2G38600.1p  transcript_id AT2G38600.1  
At2g38610	chr2:016149553	0.0	C/16149553-16149638,16149373-16149464,16148940-16149091,16148621-16148737,16148403-16148519,16148114-16148257,16147552-16147704	AT2G38610.1  CDS  gene_syn T6A23.19, T6A23_19  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product KH domain-containing protein  note KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT3G08620.1); Has 1036 Blast hits to 1035 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 715; Fungi - 103; Plants - 153; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT2G38610.1p  transcript_id AT2G38610.1  protein_id AT2G38610.1p  transcript_id AT2G38610.1  
At2g38610	chr2:016149553	0.0	C/16149553-16149638,16149373-16149464,16148940-16149091,16148621-16148737,16148403-16148519,16148114-16148257,16147552-16147704	AT2G38610.2  CDS  gene_syn T6A23.19, T6A23_19  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product KH domain-containing protein  note KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT3G08620.1); Has 1036 Blast hits to 1035 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 715; Fungi - 103; Plants - 153; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT2G38610.2p  transcript_id AT2G38610.2  protein_id AT2G38610.2p  transcript_id AT2G38610.2  
At2g38620	chr2:016152551	0.0	W/16152551-16153184,16153267-16153336,16153492-16153630,16153774-16153866	AT2G38620.2  CDS  gene_syn CDKB1;2, CYCLIN-DEPENDENT KINASE B1;2, T6A23.18, T6A23_18, cyclin-dependent kinase B1;2  gene CDKB1;2  function Encodes a member of a plant specific family of cyclin dependent kinases.  go_component cyclin-dependent protein kinase holoenzyme complex|GO:0000307|11432958|ISS  go_process regulation of cell cycle|GO:0051726|11089864|TAS  go_function protein serine/threonine kinase activity|GO:0004674|11432958|ISS  go_function kinase activity|GO:0016301||ISS  go_function cyclin binding|GO:0030332|11432958|IPI  product CDKB1;2 (cyclin-dependent kinase B1;2); cyclin binding / kinase/ protein serine/threonine kinase  note cyclin-dependent kinase B1;2 (CDKB1;2); FUNCTIONS IN: cyclin binding, protein serine/threonine kinase activity, kinase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: cyclin-dependent protein kinase holoenzyme complex; EXPRESSED IN: male gametophyte, flower, cultured cell, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CDKB1;1 (CYCLIN-DEPENDENT KINASE B1;1); cyclin-dependent protein kinase/ kinase/ protein binding (TAIR:AT3G54180.1); Has 80226 Blast hits to 79127 proteins in 2264 species: Archae - 43; Bacteria - 6072; Metazoa - 35306; Fungi - 8070; Plants - 14163; Viruses - 371; Other Eukaryotes - 16201 (source: NCBI BLink).  protein_id AT2G38620.2p  transcript_id AT2G38620.2  protein_id AT2G38620.2p  transcript_id AT2G38620.2  
At2g38620	chr2:016152551	0.0	W/16152551-16153184,16153267-16153406	AT2G38620.1  CDS  gene_syn CDKB1;2, CYCLIN-DEPENDENT KINASE B1;2, T6A23.18, T6A23_18, cyclin-dependent kinase B1;2  gene CDKB1;2  function Encodes a member of a plant specific family of cyclin dependent kinases.  go_component cyclin-dependent protein kinase holoenzyme complex|GO:0000307|11432958|ISS  go_process regulation of cell cycle|GO:0051726|11089864|TAS  go_function protein serine/threonine kinase activity|GO:0004674|11432958|ISS  go_function kinase activity|GO:0016301||ISS  go_function cyclin binding|GO:0030332|11432958|IPI  product CDKB1;2 (cyclin-dependent kinase B1;2); cyclin binding / kinase/ protein serine/threonine kinase  note cyclin-dependent kinase B1;2 (CDKB1;2); FUNCTIONS IN: cyclin binding, protein serine/threonine kinase activity, kinase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: cyclin-dependent protein kinase holoenzyme complex; EXPRESSED IN: male gametophyte, flower, cultured cell, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CDKB1;1 (CYCLIN-DEPENDENT KINASE B1;1); cyclin-dependent protein kinase/ kinase/ protein binding (TAIR:AT3G54180.1); Has 78921 Blast hits to 77954 proteins in 2247 species: Archae - 43; Bacteria - 5966; Metazoa - 34713; Fungi - 7881; Plants - 14050; Viruses - 361; Other Eukaryotes - 15907 (source: NCBI BLink).  protein_id AT2G38620.1p  transcript_id AT2G38620.1  protein_id AT2G38620.1p  transcript_id AT2G38620.1  
At2g38630	chr2:016156105	0.0	C/16156105-16156302,16155878-16156025,16155655-16155805,16155442-16155567,16155286-16155366,16154970-16155162,16154617-16154887,16154283-16154518	AT2G38630.1  CDS  gene_syn T6A23.17, T6A23_17  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54190.1); Has 79 Blast hits to 77 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT2G38630.1p  transcript_id AT2G38630.1  protein_id AT2G38630.1p  transcript_id AT2G38630.1  
At2g38640	chr2:016158238	0.0	C/16158238-16158474,16157725-16158078	AT2G38640.1  CDS  gene_syn T6A23.16, T6A23_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41590.1); Has 189 Blast hits to 189 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 1; Plants - 188; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G38640.1p  transcript_id AT2G38640.1  protein_id AT2G38640.1p  transcript_id AT2G38640.1  
At2g38646	chr2:016160576	0.0	W/16160576-16160809	AT2G38646.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G38646.1p  transcript_id AT2G38646.1  protein_id AT2G38646.1p  transcript_id AT2G38646.1  
At2g38650	chr2:016165373	0.0	C/16165373-16165523,16165252-16165280,16165130-16165171,16164980-16165039,16164153-16164219,16164007-16164053,16163611-16163912,16162839-16163190,16162213-16162743,16161856-16162134	AT2G38650.1  CDS  gene_syn GALACTURONOSYLTRANSFERASE 7, GAUT7, JS33, LGT7, LIKE GLYCOSYL TRANSFERASE 7, T6A23.15, T6A23_15  gene GAUT7  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS  product GAUT7 (GALACTURONOSYLTRANSFERASE 7); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups  note GALACTURONOSYLTRANSFERASE 7 (GAUT7); FUNCTIONS IN: polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: GAUT4 (Galacturonosyltransferase 4); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT5G47780.1); Has 882 Blast hits to 876 proteins in 179 species: Archae - 0; Bacteria - 255; Metazoa - 131; Fungi - 43; Plants - 430; Viruses - 2; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT2G38650.1p  transcript_id AT2G38650.1  protein_id AT2G38650.1p  transcript_id AT2G38650.1  
At2g38660	chr2:016166392	0.0	W/16166392-16166563,16166661-16166977,16167334-16167570,16167669-16167836,16168030-16168194	AT2G38660.1  CDS  gene_syn T6A23.14, T6A23_14  go_process metabolic process|GO:0008152||IEA  go_process folic acid and derivative biosynthetic process|GO:0009396||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_process folic acid and derivative biosynthetic process|GO:0009396||ISS  go_function catalytic activity|GO:0003824||ISS  product tetrahydrofolate dehydrogenase/cyclohydrolase, putative  note tetrahydrofolate dehydrogenase/cyclohydrolase, putative; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: folic acid and derivative biosynthetic process, metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetrahydrofolate dehydrogenase/cyclohydrolase (InterPro:IPR000672), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: tetrahydrofolate dehydrogenase/cyclohydrolase, putative (TAIR:AT4G00620.1); Has 7100 Blast hits to 7095 proteins in 1554 species: Archae - 77; Bacteria - 3120; Metazoa - 343; Fungi - 200; Plants - 87; Viruses - 0; Other Eukaryotes - 3273 (source: NCBI BLink).  protein_id AT2G38660.1p  transcript_id AT2G38660.1  protein_id AT2G38660.1p  transcript_id AT2G38660.1  
At2g38660	chr2:016166392	0.0	W/16166392-16166563,16166661-16166977,16167334-16167570,16167669-16167836,16168030-16168194	AT2G38660.3  CDS  gene_syn T6A23.14, T6A23_14  go_process metabolic process|GO:0008152||IEA  go_process folic acid and derivative biosynthetic process|GO:0009396||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_process folic acid and derivative biosynthetic process|GO:0009396||ISS  go_function catalytic activity|GO:0003824||ISS  product tetrahydrofolate dehydrogenase/cyclohydrolase, putative  note tetrahydrofolate dehydrogenase/cyclohydrolase, putative; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: folic acid and derivative biosynthetic process, metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetrahydrofolate dehydrogenase/cyclohydrolase (InterPro:IPR000672), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: tetrahydrofolate dehydrogenase/cyclohydrolase, putative (TAIR:AT4G00620.1); Has 7100 Blast hits to 7095 proteins in 1554 species: Archae - 77; Bacteria - 3120; Metazoa - 343; Fungi - 200; Plants - 87; Viruses - 0; Other Eukaryotes - 3273 (source: NCBI BLink).  protein_id AT2G38660.3p  transcript_id AT2G38660.3  protein_id AT2G38660.3p  transcript_id AT2G38660.3  
At2g38660	chr2:016166392	0.0	W/16166392-16166563,16166661-16166977,16167334-16167570,16167671-16167676	AT2G38660.2  CDS  gene_syn T6A23.14, T6A23_14  go_process metabolic process|GO:0008152||IEA  go_process folic acid and derivative biosynthetic process|GO:0009396||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_process folic acid and derivative biosynthetic process|GO:0009396||ISS  go_function catalytic activity|GO:0003824||ISS  product tetrahydrofolate dehydrogenase/cyclohydrolase, putative  note tetrahydrofolate dehydrogenase/cyclohydrolase, putative; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: folic acid and derivative biosynthetic process, metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetrahydrofolate dehydrogenase/cyclohydrolase (InterPro:IPR000672), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: tetrahydrofolate dehydrogenase/cyclohydrolase, putative (TAIR:AT4G00620.1); Has 6404 Blast hits to 6403 proteins in 1528 species: Archae - 77; Bacteria - 3051; Metazoa - 324; Fungi - 198; Plants - 86; Viruses - 0; Other Eukaryotes - 2668 (source: NCBI BLink).  protein_id AT2G38660.2p  transcript_id AT2G38660.2  protein_id AT2G38660.2p  transcript_id AT2G38660.2  
At2g38670	chr2:016168979	0.0	W/16168979-16169301,16169391-16169626,16169726-16169910,16170439-16170510,16170722-16170789,16171043-16171163,16171249-16171314,16171397-16171519,16171609-16171680	AT2G38670.1  CDS  gene_syn PECT1, PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1, T6A23.13, T6A23_13  gene PECT1  function Encodes a mitochondrial ethanolamine-phosphate cytidylyltransferase, involved in phosphatidylethanolamine (PE) biosynthesis.  go_component mitochondrion|GO:0005739|14671022|IDA  go_process phosphatidylethanolamine biosynthetic process|GO:0006646|17189343|TAS  go_process biosynthetic process|GO:0009058||ISS  go_process response to cold|GO:0009409|15147879|IEP  go_function ethanolamine-phosphate cytidylyltransferase activity|GO:0004306|17189343|IMP  go_function ethanolamine-phosphate cytidylyltransferase activity|GO:0004306||ISS  product PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1); ethanolamine-phosphate cytidylyltransferase  note PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1 (PECT1); FUNCTIONS IN: ethanolamine-phosphate cytidylyltransferase activity; INVOLVED IN: phosphatidylethanolamine biosynthetic process, response to cold, biosynthetic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cytidyltransferase-related (InterPro:IPR004821), Cytidylyltransferase (InterPro:IPR004820); BEST Arabidopsis thaliana protein match is: cholinephosphate cytidylyltransferase, putative / phosphorylcholine transferase, putative / CTP:phosphocholine cytidylyltransferase, putative (TAIR:AT2G32260.1); Has 7606 Blast hits to 4199 proteins in 934 species: Archae - 168; Bacteria - 3194; Metazoa - 598; Fungi - 294; Plants - 159; Viruses - 4; Other Eukaryotes - 3189 (source: NCBI BLink).  protein_id AT2G38670.1p  transcript_id AT2G38670.1  protein_id AT2G38670.1p  transcript_id AT2G38670.1  
At2g38680	chr2:016175772	0.0	C/16175772-16175873,16175617-16175680,16175406-16175538,16175184-16175307,16175028-16175084,16174835-16174931,16174462-16174672,16174326-16174386,16174179-16174239,16174011-16174048	AT2G38680.1  CDS  gene_syn T6A23.12, T6A23_12  go_component cytoplasm|GO:0005737||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function 5 -nucleotidase activity|GO:0008253||IEA  go_process biological_process|GO:0008150||ND  product 5 -nucleotidase/ magnesium ion binding  note 5 -nucleotidase/ magnesium ion binding; FUNCTIONS IN: magnesium ion binding, 5 -nucleotidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IE (InterPro:IPR006434); Has 262 Blast hits to 262 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 228; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT2G38680.1p  transcript_id AT2G38680.1  protein_id AT2G38680.1p  transcript_id AT2G38680.1  
At2g38690	chr2:016177316	0.0	C/16177316-16177663,16177154-16177219,16176947-16177102,16176476-16176616	AT2G38690.1  CDS  gene_syn T6A23.11, T6A23_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, leaf whorl, sepal, flower, carpel; EXPRESSED DURING: petal differentiation and expansion stage; Has 7 Blast hits to 5 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 2; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G38690.1p  transcript_id AT2G38690.1  protein_id AT2G38690.1p  transcript_id AT2G38690.1  
At2g38695	chr2:016177946	0.0	W/16177946-16177990,16178074-16178193,16178318-16178363,16178450-16178504,16178936-16179031,16179148-16179201,16179266-16179331,16179759-16179786,16179868-16179910,16179984-16180036	AT2G38695.2  CDS  go_component membrane|GO:0016020|11152613|ISS  product unknown protein  note unknown protein; LOCATED IN: membrane.  protein_id AT2G38695.2p  transcript_id AT2G38695.2  protein_id AT2G38695.2p  transcript_id AT2G38695.2  
At2g38695	chr2:016177946	0.0	W/16177946-16177990,16178074-16178193,16178318-16178363,16178450-16178504,16178936-16179031,16179148-16179201,16179266-16179331,16179759-16179786,16179868-16180062,16180159-16180236	AT2G38695.3  CDS  go_component membrane|GO:0016020|11152613|ISS  product unknown protein  note unknown protein; LOCATED IN: membrane.  protein_id AT2G38695.3p  transcript_id AT2G38695.3  protein_id AT2G38695.3p  transcript_id AT2G38695.3  
At2g38695	chr2:016177946	0.0	W/16177946-16177990,16178074-16178193,16178318-16178363,16178450-16178504,16178936-16179031,16179148-16179201,16179266-16179331,16179984-16180062,16180159-16180236	AT2G38695.1  CDS  go_component membrane|GO:0016020|11152613|ISS  product unknown protein  note unknown protein; LOCATED IN: membrane; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G38695.1p  transcript_id AT2G38695.1  protein_id AT2G38695.1p  transcript_id AT2G38695.1  
At2g38700	chr2:016183576	0.0	C/16183576-16183785,16183221-16183419,16182671-16182734,16182293-16182437,16181898-16181984,16181585-16181742,16181437-16181485,16181200-16181324,16180918-16181119	AT2G38700.1  CDS  gene_syn ATMVD1, MEVALONATE DIPHOSPHATE DECARBOXYLASE, MEVALONATE DIPHOSPHATE DECARBOXYLASE 1, MVD1, T6A23.10, T6A23_10  gene MVD1  function Encodes mevalonate diphosphate decarboxylase, the enzyme that catalyzes the synthesis of isopentenyl diphosphate, used in sterol and isoprenoid biosynthesis. The protein appears to form a homodimeric complex. Incidentally, it was shown that the Arabidopsis MVD protein could also interact with its yeast homolog to form a heterodimer.  go_component cellular_component|GO:0005575||ND  go_process lipid biosynthetic process|GO:0008610|10344201|TAS  go_process isopentenyl diphosphate biosynthetic process, mevalonate pathway|GO:0019287|12777052|TAS  go_function diphosphomevalonate decarboxylase activity|GO:0004163|10344201|IGI  go_function protein homodimerization activity|GO:0042803|10344201|IPI  product MVD1 (MEVALONATE DIPHOSPHATE DECARBOXYLASE 1); diphosphomevalonate decarboxylase/ protein homodimerization  note MEVALONATE DIPHOSPHATE DECARBOXYLASE 1 (MVD1); FUNCTIONS IN: diphosphomevalonate decarboxylase activity, protein homodimerization activity; INVOLVED IN: lipid biosynthetic process, isopentenyl diphosphate biosynthetic process, mevalonate pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Diphosphomevalonate decarboxylase (InterPro:IPR005935), GHMP kinase (InterPro:IPR006204), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721), GHMP kinase, C-terminal (InterPro:IPR013750); BEST Arabidopsis thaliana protein match is: mevalonate diphosphate decarboxylase, putative (TAIR:AT3G54250.1); Has 862 Blast hits to 860 proteins in 340 species: Archae - 24; Bacteria - 367; Metazoa - 103; Fungi - 98; Plants - 34; Viruses - 0; Other Eukaryotes - 236 (source: NCBI BLink).  protein_id AT2G38700.1p  transcript_id AT2G38700.1  protein_id AT2G38700.1p  transcript_id AT2G38700.1  
At2g38710	chr2:016186661	0.0	C/16186661-16186764,16186115-16186234,16185159-16185273,16184810-16184903,16184517-16184728	AT2G38710.1  CDS  gene_syn T6A23.9, T6A23_9  go_process response to salt stress|GO:0009651|17916636|IEP  go_component cellular_component|GO:0005575||ND  product AMMECR1 family  note AMMECR1 family; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMMECR1 (InterPro:IPR002733); Has 663 Blast hits to 661 proteins in 296 species: Archae - 134; Bacteria - 195; Metazoa - 136; Fungi - 83; Plants - 27; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT2G38710.1p  transcript_id AT2G38710.1  protein_id AT2G38710.1p  transcript_id AT2G38710.1  
At2g38710	chr2:016186661	0.0	C/16186661-16186764,16186115-16186234,16185159-16185273,16184810-16184903,16184517-16184728	AT2G38710.2  CDS  gene_syn T6A23.9, T6A23_9  go_process response to salt stress|GO:0009651|17916636|IEP  go_component cellular_component|GO:0005575||ND  product AMMECR1 family  note AMMECR1 family; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMMECR1 (InterPro:IPR002733); Has 663 Blast hits to 661 proteins in 296 species: Archae - 134; Bacteria - 195; Metazoa - 136; Fungi - 83; Plants - 27; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT2G38710.2p  transcript_id AT2G38710.2  protein_id AT2G38710.2p  transcript_id AT2G38710.2  
At2g38720	chr2:016188047	0.0	W/16188047-16188097,16188538-16188741,16188826-16189071,16189156-16189371,16189608-16189763,16189867-16190026,16190543-16190694,16190971-16191058,16191222-16191329,16191551-16191624,16191696-16191770,16191869-16192102	AT2G38720.1  CDS  gene_syn MAP65-5, MICROTUBULE-ASSOCIATED PROTEIN 65-5, T6A23.8, T6A23_8  gene MAP65-5  go_component spindle|GO:0005819|15469496|IDA  go_component microtubule|GO:0005874|15469496|IDA  go_component phragmoplast|GO:0009524|15469496|IDA  go_component phragmoplast|GO:0009524|19060108|IDA  go_component preprophase band|GO:0009574|19060108|IDA  go_component cortical microtubule|GO:0055028|19060108|IDA  go_process microtubule polymerization|GO:0046785|19060108|IDA  go_process anaphase|GO:0051322|19060108|IDA  go_function microtubule binding|GO:0008017|19060108|IDA  product MAP65-5 (MICROTUBULE-ASSOCIATED PROTEIN 65-5); microtubule binding  note MICROTUBULE-ASSOCIATED PROTEIN 65-5 (MAP65-5); FUNCTIONS IN: microtubule binding; INVOLVED IN: microtubule polymerization, anaphase; LOCATED IN: cortical microtubule, microtubule, preprophase band, spindle, phragmoplast; EXPRESSED IN: shoot apex, sperm cell, flower, pollen tube, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: MAP65/ASE1 (InterPro:IPR007145); BEST Arabidopsis thaliana protein match is: ATMAP65-1 (MICROTUBULE-ASSOCIATED PROTEINS 65-1); microtubule binding (TAIR:AT5G55230.1); Has 7626 Blast hits to 5750 proteins in 517 species: Archae - 132; Bacteria - 695; Metazoa - 3975; Fungi - 655; Plants - 384; Viruses - 29; Other Eukaryotes - 1756 (source: NCBI BLink).  protein_id AT2G38720.1p  transcript_id AT2G38720.1  protein_id AT2G38720.1p  transcript_id AT2G38720.1  
At2g38730	chr2:016193821	0.0	C/16193821-16194038,16193402-16193489,16193165-16193257,16192991-16193023,16192790-16192846,16192579-16192689	AT2G38730.1  CDS  gene_syn T6A23.7, T6A23_7  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||IEA  go_process protein folding|GO:0006457||ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative  note peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP2) / rotamase (TAIR:AT2G21130.1); Has 10133 Blast hits to 10113 proteins in 1461 species: Archae - 80; Bacteria - 3058; Metazoa - 2388; Fungi - 954; Plants - 718; Viruses - 4; Other Eukaryotes - 2931 (source: NCBI BLink).  protein_id AT2G38730.1p  transcript_id AT2G38730.1  protein_id AT2G38730.1p  transcript_id AT2G38730.1  
At2g38740	chr2:016195961	0.0	C/16195961-16195995,16195476-16195590,16195179-16195330,16194639-16195071	AT2G38740.1  CDS  gene_syn T6A23.6, T6A23_6  go_component plasma membrane|GO:0005886|17644812|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity|GO:0016787||IEA  go_function hydrolase activity|GO:0016787||ISS  product haloacid dehalogenase-like hydrolase family protein  note haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Haloacid dehydrogenase/epoxide hydrolase (InterPro:IPR005833), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: haloacid dehalogenase-like hydrolase family protein (TAIR:AT1G56500.1); Has 10291 Blast hits to 10291 proteins in 1397 species: Archae - 137; Bacteria - 7267; Metazoa - 142; Fungi - 274; Plants - 203; Viruses - 3; Other Eukaryotes - 2265 (source: NCBI BLink).  protein_id AT2G38740.1p  transcript_id AT2G38740.1  protein_id AT2G38740.1p  transcript_id AT2G38740.1  
At2g38750	chr2:016198383	0.0	C/16198383-16198431,16198094-16198275,16197352-16197570,16197049-16197270,16196886-16196957,16196582-16196797	AT2G38750.1  CDS  gene_syn ANNAT4, ANNEXIN 4, ANNEXIN ARABIDOPSIS 4, T6A23.5, T6A23_5  gene ANNAT4  function Annexins are a family of calcium dependent membrane binding proteins though to be involved in Golgi mediated secretion. This is one of four annexins identified in Arabidopsis.  go_component cell surface|GO:0009986||NAS  go_process response to osmotic stress|GO:0006970|15161963|IMP  go_process response to abscisic acid stimulus|GO:0009737|15161963|IMP  go_function calcium ion binding|GO:0005509||ISS  go_function calcium ion binding|GO:0005509||NAS  go_function calcium-dependent phospholipid binding|GO:0005544||ISS  product ANNAT4 (ANNEXIN ARABIDOPSIS 4); calcium ion binding / calcium-dependent phospholipid binding  note ANNEXIN ARABIDOPSIS 4 (ANNAT4); FUNCTIONS IN: calcium-dependent phospholipid binding, calcium ion binding; INVOLVED IN: response to abscisic acid stimulus, response to osmotic stress; LOCATED IN: cell surface; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Annexin like protein (InterPro:IPR015472), Annexin repeat (InterPro:IPR018502), Annexin repeat, conserved site (InterPro:IPR018252), Annexin (InterPro:IPR001464); BEST Arabidopsis thaliana protein match is: annexin, putative (TAIR:AT5G12380.1); Has 1953 Blast hits to 1712 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 1507; Fungi - 72; Plants - 267; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT2G38750.1p  transcript_id AT2G38750.1  protein_id AT2G38750.1p  transcript_id AT2G38750.1  
At2g38760	chr2:016201086	0.0	W/16201086-16201161,16201252-16201397,16201473-16201706,16201797-16202009,16202101-16202193,16202287-16202490	AT2G38760.1  CDS  gene_syn ANNAT3, ANNEXIN 3, ANNEXIN ARABIDOPSIS 3, T6A23.4, T6A23_4  gene ANNAT3  function Annexins are calcium binding proteins that are localized in the cytoplasm. When cytosolic Ca2+ increases, they relocate to the plasma membrane.  go_component vacuole|GO:0005773|15539469|IDA  go_component cell surface|GO:0009986||NAS  go_function calcium ion binding|GO:0005509||ISS  go_function calcium ion binding|GO:0005509||NAS  go_function calcium-dependent phospholipid binding|GO:0005544||ISS  product ANNAT3 (ANNEXIN ARABIDOPSIS 3); calcium ion binding / calcium-dependent phospholipid binding  note ANNEXIN ARABIDOPSIS 3 (ANNAT3); FUNCTIONS IN: calcium-dependent phospholipid binding, calcium ion binding; LOCATED IN: vacuole, cell surface; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Annexin like protein (InterPro:IPR015472), Annexin repeat (InterPro:IPR018502), Annexin repeat, conserved site (InterPro:IPR018252), Annexin (InterPro:IPR001464); BEST Arabidopsis thaliana protein match is: annexin, putative (TAIR:AT5G12380.1); Has 3272 Blast hits to 1802 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 2712; Fungi - 99; Plants - 283; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink).  protein_id AT2G38760.1p  transcript_id AT2G38760.1  protein_id AT2G38760.1p  transcript_id AT2G38760.1  
At2g38770	chr2:016209837	0.0	C/16209837-16210253,16209668-16209757,16209404-16209466,16209072-16209158,16208830-16208982,16208601-16208737,16208172-16208406,16207885-16207995,16206333-16207391,16205987-16206244,16205316-16205501,16204055-16205209,16203499-16203849,16203185-16203412	AT2G38770.1  CDS  gene_syn EMB2765, EMBRYO DEFECTIVE 2765, T6A23.3, T6A23_3  gene EMB2765  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  product EMB2765 (EMBRYO DEFECTIVE 2765)  note EMBRYO DEFECTIVE 2765 (EMB2765); LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: LBA1 (LOW-LEVEL BETA-AMYLASE 1); ATP binding / DNA binding / RNA helicase/ hydrolase (TAIR:AT5G47010.1); Has 2711 Blast hits to 2382 proteins in 330 species: Archae - 81; Bacteria - 288; Metazoa - 840; Fungi - 683; Plants - 242; Viruses - 0; Other Eukaryotes - 577 (source: NCBI BLink).  protein_id AT2G38770.1p  transcript_id AT2G38770.1  protein_id AT2G38770.1p  transcript_id AT2G38770.1  
At2g38780	chr2:016210864	0.0	W/16210864-16211302,16211511-16211845,16212213-16212365,16212808-16212900,16213264-16213322,16213590-16213683,16213886-16214110	AT2G38780.1  CDS  gene_syn T6A23.2, T6A23_2  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 28 Blast hits to 28 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G38780.1p  transcript_id AT2G38780.1  protein_id AT2G38780.1p  transcript_id AT2G38780.1  
At2g38790	chr2:016214546	0.0	C/16214546-16215160	AT2G38790.1  CDS  gene_syn F13I13.2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G38790.1p  transcript_id AT2G38790.1  protein_id AT2G38790.1p  transcript_id AT2G38790.1  
At2g38800	chr2:016216999	0.0	W/16216999-16218837	AT2G38800.1  CDS  gene_syn F13I13.3, F13I13_3  go_component cellular_component|GO:0005575||ND  go_function calmodulin binding|GO:0005516|11782485|IEP  go_function calmodulin binding|GO:0005516|11782485|TAS  product calmodulin-binding protein-related  note calmodulin-binding protein-related; FUNCTIONS IN: calmodulin binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Calmodulin-binding, plant (InterPro:IPR012417); BEST Arabidopsis thaliana protein match is: calmodulin-binding protein-related (TAIR:AT3G54570.1); Has 3920 Blast hits to 2069 proteins in 284 species: Archae - 14; Bacteria - 2107; Metazoa - 520; Fungi - 198; Plants - 121; Viruses - 26; Other Eukaryotes - 934 (source: NCBI BLink).  protein_id AT2G38800.1p  transcript_id AT2G38800.1  protein_id AT2G38800.1p  transcript_id AT2G38800.1  
At2g38810	chr2:016220566	0.0	C/16220566-16220679,16219444-16219740	AT2G38810.1  CDS  gene_syn F13I13.4, F13I13_4, HISTONE H2A 8, HTA8  gene HTA8  function Encodes HTA8, a histone H2A protein.  go_component nucleolus|GO:0005730|15496452|IDA  go_function DNA binding|GO:0003677||IEA  go_process regulation of flower development|GO:0009909|17470967|IGI  go_function DNA binding|GO:0003677||ISS  product HTA8 (HISTONE H2A 8); DNA binding  note HISTONE H2A 8 (HTA8); FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of flower development; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: HTA11; DNA binding (TAIR:AT3G54560.1); Has 3232 Blast hits to 3232 proteins in 274 species: Archae - 0; Bacteria - 0; Metazoa - 2171; Fungi - 237; Plants - 444; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink).  protein_id AT2G38810.1p  transcript_id AT2G38810.1  protein_id AT2G38810.1p  transcript_id AT2G38810.1  
At2g38810	chr2:016220566	0.0	C/16220566-16220679,16219444-16219740	AT2G38810.2  CDS  gene_syn F13I13.4, F13I13_4, HISTONE H2A 8, HTA8  gene HTA8  function Encodes HTA8, a histone H2A protein.  go_component nucleolus|GO:0005730|15496452|IDA  go_function DNA binding|GO:0003677||IEA  go_process regulation of flower development|GO:0009909|17470967|IGI  go_function DNA binding|GO:0003677||ISS  product HTA8 (HISTONE H2A 8); DNA binding  note HISTONE H2A 8 (HTA8); FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of flower development; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: HTA11; DNA binding (TAIR:AT3G54560.1); Has 3232 Blast hits to 3232 proteins in 274 species: Archae - 0; Bacteria - 0; Metazoa - 2171; Fungi - 237; Plants - 444; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink).  protein_id AT2G38810.2p  transcript_id AT2G38810.2  protein_id AT2G38810.2p  transcript_id AT2G38810.2  
At2g38810	chr2:016220566	0.0	C/16220566-16220679,16219444-16219740	AT2G38810.3  CDS  gene_syn F13I13.4, F13I13_4, HISTONE H2A 8, HTA8  gene HTA8  function Encodes HTA8, a histone H2A protein.  go_component nucleolus|GO:0005730|15496452|IDA  go_function DNA binding|GO:0003677||IEA  go_process regulation of flower development|GO:0009909|17470967|IGI  go_function DNA binding|GO:0003677||ISS  product HTA8 (HISTONE H2A 8); DNA binding  note HISTONE H2A 8 (HTA8); FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of flower development; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: HTA11; DNA binding (TAIR:AT3G54560.1); Has 3232 Blast hits to 3232 proteins in 274 species: Archae - 0; Bacteria - 0; Metazoa - 2171; Fungi - 237; Plants - 444; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink).  protein_id AT2G38810.3p  transcript_id AT2G38810.3  protein_id AT2G38810.3p  transcript_id AT2G38810.3  
At2g38820	chr2:016222271	0.0	W/16222271-16222645,16222726-16222795,16222862-16222918,16223029-16223393	AT2G38820.1  CDS  gene_syn F13I13.5, F13I13_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22970.1); Has 215 Blast hits to 215 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 213; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G38820.1p  transcript_id AT2G38820.1  protein_id AT2G38820.1p  transcript_id AT2G38820.1  
At2g38820	chr2:016222271	0.0	W/16222271-16222645,16222726-16222918,16223029-16223393	AT2G38820.2  CDS  gene_syn F13I13.5, F13I13_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22970.1); Has 216 Blast hits to 216 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 214; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G38820.2p  transcript_id AT2G38820.2  protein_id AT2G38820.2p  transcript_id AT2G38820.2  
At2g38823	chr2:016224105	0.0	W/16224105-16224254,16224344-16224502,16224598-16224687,16224783-16224908,16224994-16225245	AT2G38823.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54520.1); Has 597 Blast hits to 543 proteins in 96 species: Archae - 12; Bacteria - 49; Metazoa - 209; Fungi - 16; Plants - 16; Viruses - 2; Other Eukaryotes - 293 (source: NCBI BLink).  protein_id AT2G38823.1p  transcript_id AT2G38823.1  protein_id AT2G38823.1p  transcript_id AT2G38823.1  
At2g38830	chr2:016225777	0.0	W/16225777-16226772	AT2G38830.1  CDS  gene_syn F13I13.6, F13I13_6  go_component endomembrane system|GO:0012505||IEA  go_process protein modification process|GO:0006464||IEA  go_process protein transport|GO:0015031||IEA  go_function molecular_function|GO:0003674||ND  product tumor susceptibility protein-related  note tumor susceptibility protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process, protein transport; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Tumour susceptibility gene 101 (InterPro:IPR008883), Steadiness box (InterPro:IPR017916); BEST Arabidopsis thaliana protein match is: ELC-Like (ELCH-like); small conjugating protein ligase (TAIR:AT5G13860.1); Has 422 Blast hits to 319 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 298; Fungi - 60; Plants - 32; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT2G38830.1p  transcript_id AT2G38830.1  protein_id AT2G38830.1p  transcript_id AT2G38830.1  
At2g38840	chr2:016227329	0.0	W/16227329-16227417,16227860-16227962,16228101-16228170,16228258-16228296,16228408-16228525,16228613-16228759,16228936-16229043,16229150-16229156,16229238-16229298,16229469-16229597,16229677-16229726,16229777-16229842,16230252-16230419,16230920-16231177,16231343-16231555,16231625-16231896,16231974-16232115	AT2G38840.1  CDS  gene_syn F13I13.7, F13I13_7  go_component endomembrane system|GO:0012505||IEA  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_process immune response|GO:0006955||ISS  go_function GTPase activity|GO:0003924||ISS  go_function GTP binding|GO:0005525||ISS  product guanylate-binding family protein  note guanylate-binding family protein; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: immune response; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Guanylate-binding protein, N-terminal (InterPro:IPR015894), Guanylate-binding protein-like, C-terminal (InterPro:IPR015900); BEST Arabidopsis thaliana protein match is: GTP binding / GTPase (TAIR:AT5G46070.1); Has 878 Blast hits to 844 proteins in 84 species: Archae - 0; Bacteria - 2; Metazoa - 681; Fungi - 7; Plants - 52; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).  protein_id AT2G38840.1p  transcript_id AT2G38840.1  protein_id AT2G38840.1p  transcript_id AT2G38840.1  
At2g38860	chr2:016235028	0.0	C/16235028-16235207,16234471-16234914,16234027-16234392,16233629-16233808	AT2G38860.1  CDS  gene_syn T7F6.3, T7F6_3, YLS5  gene YLS5  function Encodes protease I (pfpI)-like protein YLS5.  go_component endomembrane system|GO:0012505||IEA  go_process response to salt stress|GO:0009651|11351099|IEP  go_process response to ethylene stimulus|GO:0009723|11230571|IEP  go_process response to abscisic acid stimulus|GO:0009737|11230571|IEP  go_process leaf senescence|GO:0010150|11230571|IEP  product YLS5  note YLS5; INVOLVED IN: response to ethylene stimulus, leaf senescence, response to salt stress, response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ThiJ/PfpI (InterPro:IPR002818); BEST Arabidopsis thaliana protein match is: DJ-1 family protein (TAIR:AT3G54600.1); Has 3593 Blast hits to 2217 proteins in 761 species: Archae - 198; Bacteria - 2985; Metazoa - 85; Fungi - 7; Plants - 76; Viruses - 0; Other Eukaryotes - 242 (source: NCBI BLink).  protein_id AT2G38860.1p  transcript_id AT2G38860.1  protein_id AT2G38860.1p  transcript_id AT2G38860.1  
At2g38860	chr2:016235028	0.0	C/16235028-16235207,16234471-16234941,16234027-16234392,16233629-16233808	AT2G38860.2  CDS  gene_syn T7F6.3, T7F6_3, YLS5  gene YLS5  function Encodes protease I (pfpI)-like protein YLS5.  go_component endomembrane system|GO:0012505||IEA  go_process response to salt stress|GO:0009651|11351099|IEP  go_process response to ethylene stimulus|GO:0009723|11230571|IEP  go_process response to abscisic acid stimulus|GO:0009737|11230571|IEP  go_process leaf senescence|GO:0010150|11230571|IEP  product YLS5  note YLS5; INVOLVED IN: response to ethylene stimulus, leaf senescence, response to salt stress, response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ThiJ/PfpI (InterPro:IPR002818); BEST Arabidopsis thaliana protein match is: DJ-1 family protein (TAIR:AT3G54600.1); Has 3409 Blast hits to 2074 proteins in 737 species: Archae - 192; Bacteria - 2873; Metazoa - 29; Fungi - 7; Plants - 71; Viruses - 0; Other Eukaryotes - 237 (source: NCBI BLink).  protein_id AT2G38860.2p  transcript_id AT2G38860.2  protein_id AT2G38860.2p  transcript_id AT2G38860.2  
At2g38860	chr2:016235028	0.0	C/16235028-16235207,16234471-16234941,16234324-16234392,16233629-16233748	AT2G38860.3  CDS  gene_syn T7F6.3, T7F6_3, YLS5  gene YLS5  function Encodes protease I (pfpI)-like protein YLS5.  go_component endomembrane system|GO:0012505||IEA  go_process response to salt stress|GO:0009651|11351099|IEP  go_process response to ethylene stimulus|GO:0009723|11230571|IEP  go_process response to abscisic acid stimulus|GO:0009737|11230571|IEP  go_process leaf senescence|GO:0010150|11230571|IEP  product YLS5  note YLS5; INVOLVED IN: response to ethylene stimulus, leaf senescence, response to salt stress, response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ThiJ/PfpI (InterPro:IPR002818); BEST Arabidopsis thaliana protein match is: DJ-1 family protein (TAIR:AT3G54600.1); Has 1564 Blast hits to 1445 proteins in 584 species: Archae - 79; Bacteria - 1270; Metazoa - 18; Fungi - 4; Plants - 86; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT2G38860.3p  transcript_id AT2G38860.3  protein_id AT2G38860.3p  transcript_id AT2G38860.3  
At2g38870	chr2:016237032	0.0	C/16237032-16237050,16236546-16236739	AT2G38870.1  CDS  gene_syn T7F6.4, T7F6_4  function Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.  go_component cell wall|GO:0005618|15593128|IDA  go_function serine-type endopeptidase inhibitor activity|GO:0004867||IEA  go_process response to wounding|GO:0009611||ISS  go_process defense response to fungus|GO:0050832|17257167|IMP  go_function serine-type endopeptidase inhibitor activity|GO:0004867||ISS  product protease inhibitor, putative  note protease inhibitor, putative; FUNCTIONS IN: serine-type endopeptidase inhibitor activity; INVOLVED IN: defense response to fungus, response to wounding; LOCATED IN: cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I13, potato inhibitor I (InterPro:IPR000864); BEST Arabidopsis thaliana protein match is: serine protease inhibitor, potato inhibitor I-type family protein (TAIR:AT2G38900.1); Has 445 Blast hits to 445 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 433; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT2G38870.1p  transcript_id AT2G38870.1  protein_id AT2G38870.1p  transcript_id AT2G38870.1  
At2g38880	chr2:016238685	0.0	W/16238685-16238884,16239581-16239710,16240045-16240050,16240139-16240219,16240308-16240316	AT2G38880.1  CDS  gene_syn ATHAP3, ATNF-YB1, HAP3, HAP3A, HEME ACTIVATOR PROTEIN (YEAST) HOMOLOG 3, HEME ACTIVATOR PROTEIN (YEAST) HOMOLOG 3A, NF-YB1, NUCLEAR FACTOR Y SUBUNIT B1, NUCLEAR FACTOR Y, SUBUNIT B1, T7F6.5, T7F6_5  gene NF-YB1  function Encodes a transcription factor from the nuclear factor Y (NF-Y) family, AtNF-YB1. Confers drought tolerance.  go_component nucleus|GO:0005634|17138697|IDA  go_component CCAAT-binding factor complex|GO:0016602|9662544|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355|9662544|ISS  go_process response to water deprivation|GO:0009414|17923671|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT B1 (NF-YB1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to water deprivation, regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3); transcription factor (TAIR:AT4G14540.1); Has 987 Blast hits to 987 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 389; Fungi - 222; Plants - 296; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT2G38880.1p  transcript_id AT2G38880.1  protein_id AT2G38880.1p  transcript_id AT2G38880.1  
At2g38880	chr2:016238685	0.0	W/16238685-16238884,16239581-16239710,16240045-16240050,16240139-16240219,16240308-16240316	AT2G38880.2  CDS  gene_syn ATHAP3, ATNF-YB1, HAP3, HAP3A, HEME ACTIVATOR PROTEIN (YEAST) HOMOLOG 3, HEME ACTIVATOR PROTEIN (YEAST) HOMOLOG 3A, NF-YB1, NUCLEAR FACTOR Y SUBUNIT B1, NUCLEAR FACTOR Y, SUBUNIT B1, T7F6.5, T7F6_5  gene NF-YB1  function Encodes a transcription factor from the nuclear factor Y (NF-Y) family, AtNF-YB1. Confers drought tolerance.  go_component nucleus|GO:0005634|17138697|IDA  go_component CCAAT-binding factor complex|GO:0016602|9662544|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355|9662544|ISS  go_process response to water deprivation|GO:0009414|17923671|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT B1 (NF-YB1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to water deprivation, regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Histone-fold (InterPro:IPR009072), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3); transcription factor (TAIR:AT4G14540.1); Has 987 Blast hits to 987 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 389; Fungi - 222; Plants - 296; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT2G38880.2p  transcript_id AT2G38880.2  protein_id AT2G38880.2p  transcript_id AT2G38880.2  
At2g38880	chr2:016238685	0.0	W/16238685-16238884,16239581-16239710,16240045-16240050,16240139-16240219,16240308-16240316	AT2G38880.5  CDS  gene_syn ATHAP3, ATNF-YB1, HAP3, HAP3A, HEME ACTIVATOR PROTEIN (YEAST) HOMOLOG 3, HEME ACTIVATOR PROTEIN (YEAST) HOMOLOG 3A, NF-YB1, NUCLEAR FACTOR Y SUBUNIT B1, NUCLEAR FACTOR Y, SUBUNIT B1, T7F6.5, T7F6_5  gene NF-YB1  function Encodes a transcription factor from the nuclear factor Y (NF-Y) family, AtNF-YB1. Confers drought tolerance.  go_component nucleus|GO:0005634|17138697|IDA  go_component CCAAT-binding factor complex|GO:0016602|9662544|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355|9662544|ISS  go_process response to water deprivation|GO:0009414|17923671|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT B1 (NF-YB1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to water deprivation, regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3); transcription factor (TAIR:AT4G14540.1); Has 987 Blast hits to 987 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 389; Fungi - 222; Plants - 296; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT2G38880.5p  transcript_id AT2G38880.5  protein_id AT2G38880.5p  transcript_id AT2G38880.5  
At2g38880	chr2:016238685	0.0	W/16238685-16238884,16239581-16239710,16240045-16240050,16240139-16240225	AT2G38880.3  CDS  gene_syn ATHAP3, ATNF-YB1, HAP3, HAP3A, HEME ACTIVATOR PROTEIN (YEAST) HOMOLOG 3, HEME ACTIVATOR PROTEIN (YEAST) HOMOLOG 3A, NF-YB1, NUCLEAR FACTOR Y SUBUNIT B1, NUCLEAR FACTOR Y, SUBUNIT B1, T7F6.5, T7F6_5  gene NF-YB1  function Encodes a transcription factor from the nuclear factor Y (NF-Y) family, AtNF-YB1. Confers drought tolerance.  go_component nucleus|GO:0005634|17138697|IDA  go_component CCAAT-binding factor complex|GO:0016602|9662544|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355|9662544|ISS  go_process response to water deprivation|GO:0009414|17923671|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT B1 (NF-YB1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to water deprivation, regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3); transcription factor (TAIR:AT4G14540.1); Has 996 Blast hits to 996 proteins in 180 species: Archae - 0; Bacteria - 0; Metazoa - 389; Fungi - 224; Plants - 302; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).  protein_id AT2G38880.3p  transcript_id AT2G38880.3  protein_id AT2G38880.3p  transcript_id AT2G38880.3  
At2g38880	chr2:016238685	0.0	W/16238685-16238884,16239581-16239714,16240139-16240143	AT2G38880.4  CDS  gene_syn ATHAP3, ATNF-YB1, HAP3, HAP3A, HEME ACTIVATOR PROTEIN (YEAST) HOMOLOG 3, HEME ACTIVATOR PROTEIN (YEAST) HOMOLOG 3A, NF-YB1, NUCLEAR FACTOR Y SUBUNIT B1, NUCLEAR FACTOR Y, SUBUNIT B1, T7F6.5, T7F6_5  gene NF-YB1  function Encodes a transcription factor from the nuclear factor Y (NF-Y) family, AtNF-YB1. Confers drought tolerance.  go_component nucleus|GO:0005634|17138697|IDA  go_component CCAAT-binding factor complex|GO:0016602|9662544|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355|9662544|ISS  go_process response to water deprivation|GO:0009414|17923671|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT B1 (NF-YB1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to water deprivation, regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3); transcription factor (TAIR:AT4G14540.1); Has 976 Blast hits to 976 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 387; Fungi - 218; Plants - 295; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT2G38880.4p  transcript_id AT2G38880.4  protein_id AT2G38880.4p  transcript_id AT2G38880.4  
At2g38880	chr2:016238685	0.0	W/16238685-16238884,16239581-16239714,16240139-16240143	AT2G38880.6  CDS  gene_syn ATHAP3, ATNF-YB1, HAP3, HAP3A, HEME ACTIVATOR PROTEIN (YEAST) HOMOLOG 3, HEME ACTIVATOR PROTEIN (YEAST) HOMOLOG 3A, NF-YB1, NUCLEAR FACTOR Y SUBUNIT B1, NUCLEAR FACTOR Y, SUBUNIT B1, T7F6.5, T7F6_5  gene NF-YB1  function Encodes a transcription factor from the nuclear factor Y (NF-Y) family, AtNF-YB1. Confers drought tolerance.  go_component nucleus|GO:0005634|17138697|IDA  go_component CCAAT-binding factor complex|GO:0016602|9662544|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355|9662544|ISS  go_process response to water deprivation|GO:0009414|17923671|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT B1 (NF-YB1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to water deprivation, regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3); transcription factor (TAIR:AT4G14540.1); Has 976 Blast hits to 976 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 387; Fungi - 218; Plants - 295; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT2G38880.6p  transcript_id AT2G38880.6  protein_id AT2G38880.6p  transcript_id AT2G38880.6  
At2g38890	chr2:016241234	0.0	W/16241234-16241306,16241396-16241542,16241696-16241919,16242000-16242159,16242257-16242414,16242514-16242648	AT2G38890.1  CDS  gene_syn T7F6.6, T7F6_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 25 Blast hits to 24 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT2G38890.1p  transcript_id AT2G38890.1  protein_id AT2G38890.1p  transcript_id AT2G38890.1  
At2g38900	chr2:016243287	0.0	W/16243287-16243314,16243700-16243893	AT2G38900.1  CDS  gene_syn T7F6.7, T7F6_7  function Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.  go_function serine-type endopeptidase inhibitor activity|GO:0004867||IEA  go_component cellular_component|GO:0005575||ND  go_process defense response|GO:0006952|18674922|ISS  go_process response to wounding|GO:0009611||ISS  go_function serine-type endopeptidase inhibitor activity|GO:0004867||ISS  product serine protease inhibitor, potato inhibitor I-type family protein  note serine protease inhibitor, potato inhibitor I-type family protein; FUNCTIONS IN: serine-type endopeptidase inhibitor activity; INVOLVED IN: response to wounding, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I13, potato inhibitor I (InterPro:IPR000864); BEST Arabidopsis thaliana protein match is: protease inhibitor, putative (TAIR:AT2G38870.1); Has 170 Blast hits to 170 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 165; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT2G38900.1p  transcript_id AT2G38900.1  protein_id AT2G38900.1p  transcript_id AT2G38900.1  
At2g38905	chr2:016244392	0.0	C/16244392-16244472,16244218-16244301	AT2G38905.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process response to cold|GO:0009409||ISS  go_process hyperosmotic salinity response|GO:0042538||ISS  product hydrophobic protein, putative / low temperature and salt responsive protein, putative  note hydrophobic protein, putative / low temperature and salt responsive protein, putative; INVOLVED IN: hyperosmotic salinity response, response to cold; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0057 (InterPro:IPR000612); BEST Arabidopsis thaliana protein match is: RCI2A (RARE-COLD-INDUCIBLE 2A) (TAIR:AT3G05880.1); Has 922 Blast hits to 922 proteins in 325 species: Archae - 0; Bacteria - 466; Metazoa - 40; Fungi - 197; Plants - 185; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT2G38905.1p  transcript_id AT2G38905.1  protein_id AT2G38905.1p  transcript_id AT2G38905.1  
At2g38910	chr2:016246619	0.0	C/16246619-16247483,16246395-16246538,16246163-16246315,16245959-16246074,16245710-16245877,16245391-16245615,16245214-16245294	AT2G38910.1  CDS  gene_syn CPK20, T7F6.8, T7F6_8  gene CPK20  function member of Calcium Dependent Protein Kinase  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  go_function kinase activity|GO:0016301||ISS  product CPK20; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase  note CPK20; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CPK1 (CALCIUM DEPENDENT PROTEIN KINASE 1); calmodulin-dependent protein kinase/ kinase (TAIR:AT5G04870.1); Has 100163 Blast hits to 94300 proteins in 2740 species: Archae - 67; Bacteria - 8008; Metazoa - 43036; Fungi - 12588; Plants - 16541; Viruses - 446; Other Eukaryotes - 19477 (source: NCBI BLink).  protein_id AT2G38910.1p  transcript_id AT2G38910.1  protein_id AT2G38910.1p  transcript_id AT2G38910.1  
At2g38920	chr2:016250378	0.0	C/16250378-16250585,16249566-16249810,16249219-16249470,16248986-16249123,16248827-16248885,16248420-16248522	AT2G38920.2  CDS  gene_syn T7F6.9, T7F6_9  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related  note SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: NLA (nitrogen limitation adaptation); ubiquitin-protein ligase (TAIR:AT1G02860.2); Has 1318 Blast hits to 1303 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 961; Fungi - 103; Plants - 119; Viruses - 1; Other Eukaryotes - 134 (source: NCBI BLink).  protein_id AT2G38920.2p  transcript_id AT2G38920.2  protein_id AT2G38920.2p  transcript_id AT2G38920.2  
At2g38920	chr2:016250378	0.0	C/16250378-16250585,16249566-16249810,16249219-16249470,16248986-16249123,16248827-16248885,16248420-16248525	AT2G38920.1  CDS  gene_syn T7F6.9, T7F6_9  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related  note SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: NLA (nitrogen limitation adaptation); ubiquitin-protein ligase (TAIR:AT1G02860.1); Has 1350 Blast hits to 1335 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 1008; Fungi - 97; Plants - 115; Viruses - 1; Other Eukaryotes - 129 (source: NCBI BLink).  protein_id AT2G38920.1p  transcript_id AT2G38920.1  protein_id AT2G38920.1p  transcript_id AT2G38920.1  
At2g38920	chr2:016250378	0.0	C/16250378-16250585,16249566-16249810,16249219-16249470,16248986-16249123,16248827-16248885,16248490-16248517	AT2G38920.3  CDS  gene_syn T7F6.9, T7F6_9  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related  note SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: NLA (nitrogen limitation adaptation); ubiquitin-protein ligase (TAIR:AT1G02860.2); Has 1219 Blast hits to 1204 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 905; Fungi - 88; Plants - 115; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).  protein_id AT2G38920.3p  transcript_id AT2G38920.3  protein_id AT2G38920.3p  transcript_id AT2G38920.3  
At2g38940	chr2:016258500	0.0	W/16258500-16260104	AT2G38940.1  CDS  gene_syn ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, ATPT2, PHT1;4, T7F6.11, T7F6_11  gene ATPT2  function phosphate transporter (AtPT2)  go_component vacuole|GO:0005773|14760709|IDA  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process transport|GO:0006810||IEA  go_process phosphate transport|GO:0006817||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component membrane|GO:0016020||ISS  go_function inorganic phosphate transmembrane transporter activity|GO:0005315|9872450|ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function phosphate transmembrane transporter activity|GO:0015114||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product ATPT2 (ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2); carbohydrate transmembrane transporter/ inorganic phosphate transmembrane transporter/ phosphate transmembrane transporter/ sugar:hydrogen symporter  note ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2 (ATPT2); FUNCTIONS IN: phosphate transmembrane transporter activity, carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, inorganic phosphate transmembrane transporter activity; INVOLVED IN: transport, phosphate transport; LOCATED IN: nucleus, plasma membrane, vacuole, membrane; EXPRESSED IN: male gametophyte, cultured cell, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Phosphate permease (InterPro:IPR004738), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: carbohydrate transmembrane transporter/ phosphate transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT3G54700.1); Has 16746 Blast hits to 16692 proteins in 1164 species: Archae - 292; Bacteria - 11228; Metazoa - 1297; Fungi - 2422; Plants - 845; Viruses - 2; Other Eukaryotes - 660 (source: NCBI BLink).  protein_id AT2G38940.1p  transcript_id AT2G38940.1  protein_id AT2G38940.1p  transcript_id AT2G38940.1  
At2g38950	chr2:016261599	0.0	W/16261599-16261868,16262418-16262495,16262625-16263071,16263145-16263348,16263538-16263699,16263963-16264331,16264448-16265044	AT2G38950.1  CDS  gene_syn T7F6.12, T7F6_12  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein  note transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, C5HC2-type (InterPro:IPR004198), Transcription factor jumonji (InterPro:IPR013129), Transcription factor jumonji, JmjN (InterPro:IPR003349); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT1G08620.1); Has 1397 Blast hits to 1020 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 885; Fungi - 289; Plants - 121; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).  protein_id AT2G38950.1p  transcript_id AT2G38950.1  protein_id AT2G38950.1p  transcript_id AT2G38950.1  
At2g38960	chr2:016265455	0.0	W/16265455-16265631,16265766-16265900,16265984-16266230,16266397-16266507,16266632-16266750,16266844-16266948,16267047-16267249,16267354-16267477,16267592-16267766,16267861-16267883	AT2G38960.1  CDS  gene_syn AERO2, Arabidopsis endoplasmic reticulum oxidoreductins 2, T7F6.13, T7F6_13  gene AERO2  function endoplasmic reticulum oxidoreductin  go_process protein thiol-disulfide exchange|GO:0006467||IEA  go_function protein binding|GO:0005515||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor|GO:0016671||IEA  go_function FAD binding|GO:0050660||IEA  go_component endoplasmic reticulum|GO:0005783|13678526|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  product AERO2 (Arabidopsis endoplasmic reticulum oxidoreductins 2); FAD binding / electron carrier/ oxidoreductase, acting on sulfur group of donors, disulfide as acceptor / protein binding  note Arabidopsis endoplasmic reticulum oxidoreductins 2 (AERO2); FUNCTIONS IN: electron carrier activity, protein binding, FAD binding, oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: protein thiol-disulfide exchange; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Endoplasmic reticulum oxidoreductin 1 (InterPro:IPR007266); BEST Arabidopsis thaliana protein match is: AERO1 (Arabidopsis endoplasmic reticulum oxidoreductins 1); FAD binding / electron carrier/ oxidoreductase, acting on sulfur group of donors, disulfide as acceptor / protein binding (TAIR:AT1G72280.1); Has 357 Blast hits to 353 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 159; Fungi - 99; Plants - 39; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT2G38960.1p  transcript_id AT2G38960.1  protein_id AT2G38960.1p  transcript_id AT2G38960.1  
At2g38960	chr2:016265455	0.0	W/16265455-16265631,16265766-16265900,16265984-16266230,16266397-16266507,16266632-16266750,16266844-16266952,16267051-16267249,16267354-16267469,16267569-16267792	AT2G38960.2  CDS  gene_syn AERO2, Arabidopsis endoplasmic reticulum oxidoreductins 2, T7F6.13, T7F6_13  gene AERO2  function endoplasmic reticulum oxidoreductin  go_process protein thiol-disulfide exchange|GO:0006467||IEA  go_function protein binding|GO:0005515||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor|GO:0016671||IEA  go_function FAD binding|GO:0050660||IEA  go_component endoplasmic reticulum|GO:0005783|13678526|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  product AERO2 (Arabidopsis endoplasmic reticulum oxidoreductins 2); FAD binding / electron carrier/ oxidoreductase, acting on sulfur group of donors, disulfide as acceptor / protein binding  note Arabidopsis endoplasmic reticulum oxidoreductins 2 (AERO2); FUNCTIONS IN: electron carrier activity, protein binding, FAD binding, oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: protein thiol-disulfide exchange; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Endoplasmic reticulum oxidoreductin 1 (InterPro:IPR007266); BEST Arabidopsis thaliana protein match is: AERO1 (Arabidopsis endoplasmic reticulum oxidoreductins 1); FAD binding / electron carrier/ oxidoreductase, acting on sulfur group of donors, disulfide as acceptor / protein binding (TAIR:AT1G72280.1); Has 359 Blast hits to 355 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 159; Fungi - 99; Plants - 39; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT2G38960.2p  transcript_id AT2G38960.2  protein_id AT2G38960.2p  transcript_id AT2G38960.2  
At2g38970	chr2:016274135	0.0	W/16274135-16274344,16274783-16276651	AT2G38970.1  CDS  gene_syn T7F6.14, T7F6_14  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G54780.1); Has 3257 Blast hits to 3238 proteins in 484 species: Archae - 59; Bacteria - 1051; Metazoa - 1077; Fungi - 102; Plants - 293; Viruses - 4; Other Eukaryotes - 671 (source: NCBI BLink).  protein_id AT2G38970.1p  transcript_id AT2G38970.1  protein_id AT2G38970.1p  transcript_id AT2G38970.1  
At2g38980	chr2:016277009	0.0	C/16277009-16279354	AT2G38980.1  pseudogenic_transcript  pseudo  gene_syn T7F6.15, T7F6_15  note pseudogene, similar to fiber protein Fb12, blastp match of 53% identity and 1.2e-13 P-value to GP|25992543|gb|AAN77151.1||AF531371 fiber protein Fb12 {Gossypium barbadense}  
At2g38990	chr2:016280085	0.0	W/16280085-16280392	AT2G38990.1  mRNA_TE_gene  pseudo  gene_syn T7F6.16  note Transposable element gene, pseudogene, hypothetical protein, similar to MURA transposase of maize Mutator transposon  
At2g38995	chr2:016282166	0.0	W/16282166-16282354,16282631-16283200,16283315-16283381,16283821-16283918,16283997-16284206,16284285-16284422,16284533-16284700	AT2G38995.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1298 (InterPro:IPR009721), Uncharacterised protein family UPF0089 (InterPro:IPR004255); BEST Arabidopsis thaliana protein match is: WSD1; diacylglycerol O-acyltransferase/ long-chain-alcohol O-fatty-acyltransferase (TAIR:AT5G37300.1); Has 521 Blast hits to 512 proteins in 79 species: Archae - 2; Bacteria - 393; Metazoa - 7; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT2G38995.1p  transcript_id AT2G38995.1  protein_id AT2G38995.1p  transcript_id AT2G38995.1  
At2g39000	chr2:016287770	0.0	C/16287770-16287941,16286996-16287392,16286454-16286760	AT2G39000.1  CDS  gene_syn T7F6.17, T7F6_17  go_component chloroplast|GO:0009507||IEA  go_process metabolic process|GO:0008152||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_process metabolic process|GO:0008152||ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product GCN5-related N-acetyltransferase (GNAT) family protein  note GCN5-related N-acetyltransferase (GNAT) family protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 213 Blast hits to 213 proteins in 77 species: Archae - 10; Bacteria - 116; Metazoa - 3; Fungi - 4; Plants - 54; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT2G39000.1p  transcript_id AT2G39000.1  protein_id AT2G39000.1p  transcript_id AT2G39000.1  
At2g39000	chr2:016287770	0.0	C/16287770-16287941,16286996-16287392,16286647-16286764	AT2G39000.2  CDS  gene_syn T7F6.17, T7F6_17  go_component chloroplast|GO:0009507||IEA  go_process metabolic process|GO:0008152||ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product GCN5-related N-acetyltransferase (GNAT) family protein  note GCN5-related N-acetyltransferase (GNAT) family protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 15 Blast hits to 15 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G39000.2p  transcript_id AT2G39000.2  protein_id AT2G39000.2p  transcript_id AT2G39000.2  
At2g39000	chr2:016287877	0.0	C/16287877-16287880,16286996-16287392,16286454-16286760	AT2G39000.3  CDS  gene_syn T7F6.17, T7F6_17  go_process metabolic process|GO:0008152||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_process metabolic process|GO:0008152||ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product GCN5-related N-acetyltransferase (GNAT) family protein  note GCN5-related N-acetyltransferase (GNAT) family protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 213 Blast hits to 213 proteins in 77 species: Archae - 10; Bacteria - 116; Metazoa - 3; Fungi - 4; Plants - 54; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT2G39000.3p  transcript_id AT2G39000.3  protein_id AT2G39000.3p  transcript_id AT2G39000.3  
At2g39010	chr2:016291564	0.0	W/16291564-16291867,16292373-16292668,16293399-16293539,16293618-16293746	AT2G39010.1  CDS  gene_syn PIP2;6, PIP2E, PLASMA MEMBRANE INTRINSIC PROTEIN 2;6, PLASMA MEMBRANE INTRINSIC PROTEIN 2E, T7F6.18, T7F6_18  gene PIP2E  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_process response to nematode|GO:0009624|16478044|IEP  go_function water channel activity|GO:0015250|9276952|ISS  go_function water channel activity|GO:0015250||ISS  product PIP2E (PLASMA MEMBRANE INTRINSIC PROTEIN 2E); water channel  note PLASMA MEMBRANE INTRINSIC PROTEIN 2E (PIP2E); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, response to nematode; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: PIP2;5 (PLASMA MEMBRANE INTRINSIC PROTEIN 2;5); water channel (TAIR:AT3G54820.1); Has 6765 Blast hits to 6760 proteins in 1247 species: Archae - 57; Bacteria - 2629; Metazoa - 1275; Fungi - 284; Plants - 1496; Viruses - 2; Other Eukaryotes - 1022 (source: NCBI BLink).  protein_id AT2G39010.1p  transcript_id AT2G39010.1  protein_id AT2G39010.1p  transcript_id AT2G39010.1  
At2g39020	chr2:016295392	0.0	W/16295392-16296102	AT2G39020.1  CDS  gene_syn T7F6.19, T7F6_19  go_component chloroplast|GO:0009507|15028209|IDA  go_process metabolic process|GO:0008152||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_process metabolic process|GO:0008152||ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product GCN5-related N-acetyltransferase (GNAT) family protein  note GCN5-related N-acetyltransferase (GNAT) family protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: GCN5-related N-acetyltransferase (GNAT) family protein (TAIR:AT2G39030.1); Has 1431 Blast hits to 1430 proteins in 453 species: Archae - 20; Bacteria - 756; Metazoa - 246; Fungi - 55; Plants - 37; Viruses - 0; Other Eukaryotes - 317 (source: NCBI BLink).  protein_id AT2G39020.1p  transcript_id AT2G39020.1  protein_id AT2G39020.1p  transcript_id AT2G39020.1  
At2g39030	chr2:016298260	0.0	W/16298260-16298946	AT2G39030.1  CDS  gene_syn T7F6.20, T7F6_20  go_process metabolic process|GO:0008152||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product GCN5-related N-acetyltransferase (GNAT) family protein  note GCN5-related N-acetyltransferase (GNAT) family protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: GCN5-related N-acetyltransferase (GNAT) family protein (TAIR:AT2G39020.1); Has 1382 Blast hits to 1382 proteins in 437 species: Archae - 21; Bacteria - 727; Metazoa - 244; Fungi - 55; Plants - 38; Viruses - 0; Other Eukaryotes - 297 (source: NCBI BLink).  protein_id AT2G39030.1p  transcript_id AT2G39030.1  protein_id AT2G39030.1p  transcript_id AT2G39030.1  
At2g39040	chr2:016300901	0.0	C/16300901-16301173,16300628-16300822,16300303-16300468,16299463-16299881	AT2G39040.1  CDS  gene_syn T7F6.21, T7F6_21  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: RCI3 (RARE COLD INDUCIBLE GENE 3); peroxidase (TAIR:AT1G05260.1); Has 2573 Blast hits to 2558 proteins in 145 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 25; Plants - 2537; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT2G39040.1p  transcript_id AT2G39040.1  protein_id AT2G39040.1p  transcript_id AT2G39040.1  
At2g39050	chr2:016303427	0.0	W/16303427-16304026,16304375-16304497,16304869-16305097,16305335-16305336	AT2G39050.1  CDS  gene_syn T7F6.22, T7F6_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ricin B-related lectin (InterPro:IPR008997), Ricin B lectin (InterPro:IPR000772); Has 1440 Blast hits to 1210 proteins in 180 species: Archae - 0; Bacteria - 37; Metazoa - 486; Fungi - 318; Plants - 469; Viruses - 5; Other Eukaryotes - 125 (source: NCBI BLink).  protein_id AT2G39050.1p  transcript_id AT2G39050.1  protein_id AT2G39050.1p  transcript_id AT2G39050.1  
At2g39060	chr2:016308161	0.0	C/16308161-16308206,16307895-16307931,16307610-16307820,16307317-16307478,16307110-16307229,16306818-16307018	AT2G39060.1  CDS  gene_syn T7F6.23, T7F6_23  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  product nodulin MtN3 family protein  note nodulin MtN3 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: MtN3 and saliva related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), MtN3 and saliva related transmembrane protein (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: nodulin MtN3 family protein (TAIR:AT3G48740.1); Has 572 Blast hits to 532 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 228; Fungi - 0; Plants - 292; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT2G39060.1p  transcript_id AT2G39060.1  protein_id AT2G39060.1p  transcript_id AT2G39060.1  
At2g39080	chr2:016312262	0.0	C/16312262-16312475,16311921-16312033,16311466-16311638,16311132-16311225,16310728-16310838,16310531-16310620,16310320-16310405,16310172-16310236,16309981-16310090	AT2G39080.1  CDS  gene_syn T7F6.25, T7F6_25  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  product binding / catalytic  note binding / catalytic; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040); Has 550 Blast hits to 544 proteins in 229 species: Archae - 4; Bacteria - 410; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT2G39080.1p  transcript_id AT2G39080.1  protein_id AT2G39080.1p  transcript_id AT2G39080.1  
At2g39090	chr2:016317165	0.0	C/16317165-16317233,16316986-16317054,16316844-16316894,16316432-16316566,16316274-16316336,16315723-16315832,16315514-16315598,16315319-16315378,16314874-16314919,16314631-16314704,16314483-16314533,16314205-16314405,16314084-16314128,16313908-16314001,16313634-16313779,16313087-16313332	AT2G39090.2  CDS  gene_syn T7F6.26, T7F6_26  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product tetratricopeptide repeat (TPR)-containing protein  note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8); binding (TAIR:AT3G48150.1); Has 1833 Blast hits to 1685 proteins in 367 species: Archae - 89; Bacteria - 664; Metazoa - 415; Fungi - 121; Plants - 83; Viruses - 0; Other Eukaryotes - 461 (source: NCBI BLink).  protein_id AT2G39090.2p  transcript_id AT2G39090.2  protein_id AT2G39090.2p  transcript_id AT2G39090.2  
At2g39090	chr2:016317165	0.0	C/16317165-16317233,16316986-16317054,16316844-16316894,16316432-16316566,16316274-16316336,16315723-16315832,16315514-16315598,16315319-16315378,16314874-16314919,16314631-16314704,16314483-16314533,16314205-16314405,16314084-16314128,16313908-16314001,16313634-16313779,16313103-16313332,16312948-16313008,16312771-16312857	AT2G39090.1  CDS  gene_syn T7F6.26, T7F6_26  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product tetratricopeptide repeat (TPR)-containing protein  note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8); binding (TAIR:AT3G48150.1); Has 2541 Blast hits to 2195 proteins in 427 species: Archae - 122; Bacteria - 1024; Metazoa - 514; Fungi - 122; Plants - 88; Viruses - 0; Other Eukaryotes - 671 (source: NCBI BLink).  protein_id AT2G39090.1p  transcript_id AT2G39090.1  protein_id AT2G39090.1p  transcript_id AT2G39090.1  
At2g39100	chr2:016317462	0.0	W/16317462-16317832,16317913-16318050,16318158-16318212,16318352-16318608,16318800-16318869	AT2G39100.1  CDS  gene_syn T7F6.27, T7F6_27  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); Has 1339 Blast hits to 1337 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 547; Fungi - 101; Plants - 370; Viruses - 126; Other Eukaryotes - 195 (source: NCBI BLink).  protein_id AT2G39100.1p  transcript_id AT2G39100.1  protein_id AT2G39100.1p  transcript_id AT2G39100.1  
At2g39110	chr2:016319770	0.0	W/16319770-16319788,16320029-16320405,16320501-16320764,16320844-16320966,16321044-16321568	AT2G39110.1  CDS  gene_syn T7F6.28, T7F6_28  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT3G09830.2); Has 84187 Blast hits to 83208 proteins in 2671 species: Archae - 44; Bacteria - 7448; Metazoa - 36638; Fungi - 6663; Plants - 18818; Viruses - 405; Other Eukaryotes - 14171 (source: NCBI BLink).  protein_id AT2G39110.1p  transcript_id AT2G39110.1  protein_id AT2G39110.1p  transcript_id AT2G39110.1  
At2g39120	chr2:016321794	0.0	W/16321794-16322957	AT2G39120.1  CDS  gene_syn T7F6.29, T7F6_29  go_component intracellular|GO:0005622||IEA  go_component mitochondrion|GO:0005739||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  product ubiquitin thiolesterase  note ubiquitin thiolesterase; FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: mitochondrion, intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (InterPro:IPR001578); BEST Arabidopsis thaliana protein match is: ubiquitin thiolesterase (TAIR:AT3G58520.1); Has 214 Blast hits to 214 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 214; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G39120.1p  transcript_id AT2G39120.1  protein_id AT2G39120.1p  transcript_id AT2G39120.1  
At2g39130	chr2:016326566	0.0	C/16326566-16326744,16326101-16326426,16325419-16325633,16324996-16325019,16324146-16324546,16323890-16324025,16323633-16323798,16323500-16323543,16323346-16323408,16323171-16323269	AT2G39130.1  CDS  gene_syn T7F6.1  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product amino acid transporter family protein  note amino acid transporter family protein; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid transporter family protein (TAIR:AT3G54830.1); Has 3533 Blast hits to 3501 proteins in 205 species: Archae - 9; Bacteria - 45; Metazoa - 1503; Fungi - 650; Plants - 786; Viruses - 3; Other Eukaryotes - 537 (source: NCBI BLink).  protein_id AT2G39130.1p  transcript_id AT2G39130.1  protein_id AT2G39130.1p  transcript_id AT2G39130.1  
At2g39140	chr2:016330238	0.0	W/16330238-16330828,16330902-16331002,16331102-16331174,16331269-16331362,16331483-16331531,16331872-16332022,16332467-16332523,16332829-16332884,16333093-16333153	AT2G39140.1  CDS  gene_syn AT2G39150, SUPPRESSOR OF VARIEGATION 1, SVR1, T16B24.22, T16B24_22  gene SVR1  function Suppressor of var2 variegation phenotype. Chloroplast localized. Loss of function mutant has defects in chloroplast protein translation and rRNA processing. Similar in sequence to pseudouridine synthase proteins.  go_component amyloplast|GO:0009501|18599582|TAS  go_component chloroplast|GO:0009507|18599582|IDA  go_process maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)|GO:0000488|18599582|IMP  go_process maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)|GO:0000489|18599582|IMP  go_process plastid translation|GO:0032544|18599582|IMP  go_function RNA binding|GO:0003723||ISS  go_function pseudouridine synthase activity|GO:0009982|18599582|TAS  product SVR1 (SUPPRESSOR OF VARIEGATION 1); RNA binding / pseudouridine synthase  note SUPPRESSOR OF VARIEGATION 1 (SVR1); FUNCTIONS IN: pseudouridine synthase activity, RNA binding; INVOLVED IN: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA), maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA), plastid translation; LOCATED IN: amyloplast, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase (InterPro:IPR006145), RNA-binding S4 (InterPro:IPR002942), rRNA pseudouridine synthase, large subunit RluB/E/F, small subunit RsuA, conserved site (InterPro:IPR018496); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43340.1); Has 7705 Blast hits to 7703 proteins in 1279 species: Archae - 0; Bacteria - 5712; Metazoa - 2; Fungi - 2; Plants - 32; Viruses - 0; Other Eukaryotes - 1957 (source: NCBI BLink).  protein_id AT2G39140.1p  transcript_id AT2G39140.1  protein_id AT2G39140.1p  transcript_id AT2G39140.1  
At2g39160	chr2:016334130	0.0	C/16334130-16334173,16333490-16333808	AT2G39160.1  CDS  gene_syn T16B24.20, T16B24_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, root, stamen; EXPRESSED DURING: 4 anthesis, C globular stage; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G39160.1p  transcript_id AT2G39160.1  protein_id AT2G39160.1p  transcript_id AT2G39160.1  
At2g39170	chr2:016334726	0.0	C/16334726-16335421	AT2G39170.1  CDS  gene_syn T16B24.19, T16B24_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 35 Blast hits to 35 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G39170.1p  transcript_id AT2G39170.1  protein_id AT2G39170.1p  transcript_id AT2G39170.1  
At2g39175	chr2:016340282	0.0	W/16340282-16340360	AT2G39175.1  miRNA  gene_syn MICRORNA 160, MICRORNA160A, MIR160, MIR160A  gene MIR160A  function Encodes a microRNA that targets several ARF family members (ARF10, ARF16, ARF17). MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGCCUGGCUCCCUGUAUGCCA  go_process auxin mediated signaling pathway|GO:0009734|17672844|IMP  go_process abscisic acid mediated signaling|GO:0009738|17672844|IMP  go_process response to carbohydrate stimulus|GO:0009743|17672844|IMP  go_process fruit development|GO:0010154|17672844|IMP  go_process regulation of anthocyanin biosynthetic process|GO:0031540|17672844|IMP  go_process gene silencing by miRNA|GO:0035195|15851028|IDA  go_process leaf development|GO:0048366|17672844|IMP  go_process petal development|GO:0048441|17672844|IMP  go_process sepal development|GO:0048442|17672844|IMP  go_process developmental growth|GO:0048589|17672844|IMP  product MIR160A (MICRORNA160A); miRNA  transcript_id AT2G39175.1  
At2g39180	chr2:016344278	0.0	C/16344278-16346608	AT2G39180.1  CDS  gene_syn ARABIDOPSIS THALIANA CRINKLY4 RELATED 2, CCR2, T16B24.18, T16B24_18  gene CCR2  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function receptor activity|GO:0004872||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product CCR2 (ARABIDOPSIS THALIANA CRINKLY4 RELATED 2); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ receptor  note ARABIDOPSIS THALIANA CRINKLY4 RELATED 2 (CCR2); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TNFR/CD27/30/40/95 cysteine-rich region (InterPro:IPR001368), Protein kinase, ATP binding site (InterPro:IPR017441), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CCR1 (ARABIDOPSIS THALIANA CRINKLY4 RELATED 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ receptor (TAIR:AT3G09780.1); Has 68418 Blast hits to 67430 proteins in 2746 species: Archae - 29; Bacteria - 4726; Metazoa - 30960; Fungi - 5057; Plants - 16595; Viruses - 193; Other Eukaryotes - 10858 (source: NCBI BLink).  protein_id AT2G39180.1p  transcript_id AT2G39180.1  protein_id AT2G39180.1p  transcript_id AT2G39180.1  
At2g39190	chr2:016350140	0.0	W/16350140-16350467,16350876-16351051,16351238-16351379,16351503-16351555,16351717-16351860,16351952-16352056,16352142-16352267,16352626-16352823,16353104-16353210,16353300-16353462,16353579-16353644,16354003-16354096,16354281-16354393,16354496-16354566,16354958-16355111,16355341-16355745	AT2G39190.2  CDS  gene_syn ATATH8, T16B24.17, T16B24_17  gene ATATH8  function member of ATH subfamily  go_component chloroplast|GO:0009507||IEA  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  product ATATH8; transporter  note ATATH8; FUNCTIONS IN: transporter activity; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ABC1 family protein (TAIR:AT3G24190.1); Has 7370 Blast hits to 7337 proteins in 1100 species: Archae - 67; Bacteria - 2625; Metazoa - 371; Fungi - 313; Plants - 345; Viruses - 14; Other Eukaryotes - 3635 (source: NCBI BLink).  protein_id AT2G39190.2p  transcript_id AT2G39190.2  protein_id AT2G39190.2p  transcript_id AT2G39190.2  
At2g39190	chr2:016350140	0.0	W/16350140-16350467,16350876-16351051,16351238-16351379,16351503-16351555,16351717-16351860,16351952-16352056,16352142-16352267,16352630-16352680	AT2G39190.1  CDS  gene_syn ATATH8, T16B24.17, T16B24_17  gene ATATH8  function member of ATH subfamily  go_component chloroplast|GO:0009507||IEA  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  product ATATH8; transporter  note ATATH8; FUNCTIONS IN: transporter activity; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147); BEST Arabidopsis thaliana protein match is: ABC1 family protein (TAIR:AT1G71810.1); Has 6101 Blast hits to 6101 proteins in 1089 species: Archae - 65; Bacteria - 2585; Metazoa - 332; Fungi - 295; Plants - 312; Viruses - 12; Other Eukaryotes - 2500 (source: NCBI BLink).  protein_id AT2G39190.1p  transcript_id AT2G39190.1  protein_id AT2G39190.1p  transcript_id AT2G39190.1  
At2g39200	chr2:016359681	0.0	C/16359681-16359797,16359410-16359467,16359034-16359278,16358819-16358935,16358661-16358721,16358230-16358318,16358059-16358133,16357885-16357979,16357723-16357772,16357579-16357619,16357309-16357482,16357168-16357203,16357012-16357079,16356849-16356909,16356255-16356698	AT2G39200.1  CDS  gene_syn ATMLO12, MILDEW RESISTANCE LOCUS O 12, MLO12, T16B24.16, T16B24_16  gene MLO12  function A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO6 belongs to the clade IV, with AtMLO2, AtMLO3 and AtMLO12. The gene is expressed during early seedling growth, in root tips and cotyledon vascular system, in floral organs (anthers and stigma), and in fruit abscission zone, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|16525893|TAS  go_component plasma membrane|GO:0005886||ISS  go_process defense response|GO:0006952||ISS  go_process cell death|GO:0008219||ISS  go_process defense response to fungus, incompatible interaction|GO:0009817|16732289|IMP  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function calmodulin binding|GO:0005516||ISS  product MLO12 (MILDEW RESISTANCE LOCUS O 12); calmodulin binding  note MILDEW RESISTANCE LOCUS O 12 (MLO12); FUNCTIONS IN: calmodulin binding; INVOLVED IN: defense response to fungus, incompatible interaction, response to cyclopentenone, cell death, defense response; LOCATED IN: plasma membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326); BEST Arabidopsis thaliana protein match is: MLO2 (MILDEW RESISTANCE LOCUS O 2); calmodulin binding (TAIR:AT1G11310.1); Has 300 Blast hits to 295 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 294; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G39200.1p  transcript_id AT2G39200.1  protein_id AT2G39200.1p  transcript_id AT2G39200.1  
At2g39210	chr2:016367673	0.0	C/16367673-16368231,16366287-16367533	AT2G39210.1  CDS  gene_syn T16B24.15, T16B24_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product nodulin family protein  note nodulin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nodulin family protein (TAIR:AT2G28120.1); Has 2013 Blast hits to 1929 proteins in 375 species: Archae - 16; Bacteria - 607; Metazoa - 34; Fungi - 183; Plants - 318; Viruses - 0; Other Eukaryotes - 855 (source: NCBI BLink).  protein_id AT2G39210.1p  transcript_id AT2G39210.1  protein_id AT2G39210.1p  transcript_id AT2G39210.1  
At2g39220	chr2:016375473	0.0	C/16375473-16376663,16375055-16375363	AT2G39220.1  CDS  gene_syn PATATIN-LIKE PROTEIN 6, PLA IIB, PLP6, T16B24.14, T16B24_14  gene PLP6  go_process lipid metabolic process|GO:0006629||IEA  go_process metabolic process|GO:0008152||IEA  go_function nutrient reservoir activity|GO:0045735||ISS  product PLP6 (PATATIN-LIKE PROTEIN 6); nutrient reservoir  note PATATIN-LIKE PROTEIN 6 (PLP6); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: metabolic process, lipid metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: PLA IIIA (PATATIN-LIKE PROTEIN 6) (TAIR:AT3G54950.1); Has 917 Blast hits to 916 proteins in 158 species: Archae - 0; Bacteria - 217; Metazoa - 128; Fungi - 32; Plants - 399; Viruses - 0; Other Eukaryotes - 141 (source: NCBI BLink).  protein_id AT2G39220.1p  transcript_id AT2G39220.1  protein_id AT2G39220.1p  transcript_id AT2G39220.1  
At2g39230	chr2:016381647	0.0	W/16381647-16384250	AT2G39230.1  CDS  gene_syn T16B24.13, T16B24_13  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: shoot apex, embryo, hypocotyl, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G54980.1); Has 26795 Blast hits to 5982 proteins in 182 species: Archae - 7; Bacteria - 12; Metazoa - 902; Fungi - 795; Plants - 23780; Viruses - 0; Other Eukaryotes - 1299 (source: NCBI BLink).  protein_id AT2G39230.1p  transcript_id AT2G39230.1  protein_id AT2G39230.1p  transcript_id AT2G39230.1  
At2g39240	chr2:016387741	0.0	C/16387741-16387827,16387518-16387640,16387364-16387435,16387204-16387275,16386879-16387091,16386671-16386790,16386416-16386586,16386240-16386308,16386031-16386137,16385826-16385909,16385640-16385727,16385405-16385518,16385137-16385300,16384786-16385023	AT2G39240.1  CDS  gene_syn T16B24.12, T16B24_12  go_function binding|GO:0005488||IEA  go_function RNA polymerase I transcription factor activity|GO:0003701||ISS  product RNA polymerase I transcription factor/ binding  note RNA polymerase I transcription factor/ binding; FUNCTIONS IN: RNA polymerase I transcription factor activity, binding; CONTAINS InterPro DOMAIN/s: RNA polymerase I specific transcription initiation factor RRN3 (InterPro:IPR007991), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: RNA polymerase I specific transcription initiation factor RRN3 family protein (TAIR:AT2G34750.1); Has 245 Blast hits to 240 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 97; Fungi - 85; Plants - 35; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT2G39240.1p  transcript_id AT2G39240.1  protein_id AT2G39240.1p  transcript_id AT2G39240.1  
At2g39250	chr2:016390555	0.0	C/16390555-16390931,16390447-16390472,16390274-16390304,16390050-16390137,16389827-16389954,16389615-16389694,16389010-16389257	AT2G39250.1  CDS  gene_syn SCHNARCHZAPFEN, SNZ, T16B24.11, T16B24_11  gene SNZ  function Encodes a AP2 domain transcription factor that can repress flowering. SNZ and its paralogous gene, SCHLAFMUTZE (SMZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering.  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleus|GO:0005634|7919989|TAS  go_component nucleolus|GO:0005730|15610358|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|7756828|TAS  go_process multicellular organismal development|GO:0007275|9192694|ISS  go_process negative regulation of flower development|GO:0009910|14573523|IMP  go_function DNA binding|GO:0003677|7756828|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|7919989|TAS  product SNZ (SCHNARCHZAPFEN); DNA binding / transcription factor  note SCHNARCHZAPFEN (SNZ); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: multicellular organismal development, negative regulation of flower development, regulation of transcription, DNA-dependent; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 leaf senescence stage, LP.02 two leaves visible; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: SMZ (SCHLAFMUTZE); DNA binding / transcription factor (TAIR:AT3G54990.1); Has 3076 Blast hits to 2753 proteins in 207 species: Archae - 0; Bacteria - 18; Metazoa - 43; Fungi - 4; Plants - 2944; Viruses - 11; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT2G39250.1p  transcript_id AT2G39250.1  protein_id AT2G39250.1p  transcript_id AT2G39250.1  
At2g39260	chr2:016399541	0.0	C/16399541-16399588,16399358-16399445,16398977-16399179,16398307-16398645,16398089-16398193,16397809-16397936,16397152-16397325,16396895-16396976,16396272-16396565,16395985-16396182,16395695-16395796,16395220-16395471,16394895-16395113,16393960-16394130,16393526-16393711,16392942-16393400,16392288-16392785	AT2G39260.1  CDS  gene_syn T16B24.10, T16B24_10  go_process RNA metabolic process|GO:0016070||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process translation|GO:0006412||ISS  go_function RNA binding|GO:0003723||ISS  product RNA binding / binding / protein binding  note RNA binding / binding / protein binding; FUNCTIONS IN: protein binding, RNA binding, binding; INVOLVED IN: translation, RNA metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), MIF4G-like, type 3 (InterPro:IPR003890), Up-frameshift suppressor 2 (InterPro:IPR007193), MIF4-like, type 1/2/3 (InterPro:IPR016021); Has 10405 Blast hits to 5271 proteins in 412 species: Archae - 32; Bacteria - 466; Metazoa - 5058; Fungi - 937; Plants - 217; Viruses - 133; Other Eukaryotes - 3562 (source: NCBI BLink).  protein_id AT2G39260.1p  transcript_id AT2G39260.1  protein_id AT2G39260.1p  transcript_id AT2G39260.1  
At2g39270	chr2:016399983	0.0	W/16399983-16400318,16400691-16400831,16400916-16401188,16401271-16401408	AT2G39270.1  CDS  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_process anaerobic respiration|GO:0009061||IEA  go_process nucleotide metabolic process|GO:0009117||IEA  go_function ATP binding|GO:0005524||IEA  go_function phosphotransferase activity, phosphate group as acceptor|GO:0016776||IEA  go_function nucleotide kinase activity|GO:0019201||IEA  go_function nucleobase, nucleoside, nucleotide kinase activity|GO:0019205||IEA  go_function nucleotide kinase activity|GO:0019201||ISS  product adenylate kinase family protein  note adenylate kinase family protein; FUNCTIONS IN: nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, ATP binding, phosphotransferase activity, phosphate group as acceptor; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process; CONTAINS InterPro DOMAIN/s: Adenylate kinase, subfamily (InterPro:IPR006259), Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: ADK (ADENOSINE KINASE); adenylate kinase/ nucleotide kinase (TAIR:AT2G37250.1); Has 8604 Blast hits to 8484 proteins in 1852 species: Archae - 61; Bacteria - 4479; Metazoa - 995; Fungi - 287; Plants - 246; Viruses - 0; Other Eukaryotes - 2536 (source: NCBI BLink).  protein_id AT2G39270.1p  transcript_id AT2G39270.1  protein_id AT2G39270.1p  transcript_id AT2G39270.1  
At2g39280	chr2:016406613	0.0	C/16406613-16406650,16406297-16406366,16405371-16405979,16405081-16405260,16404857-16404970,16404691-16404749,16404425-16404491,16404286-16404337,16404109-16404201,16403916-16403999,16403429-16403832,16403159-16403220,16402986-16403055,16402749-16402829,16402578-16402679,16402138-16402262,16402001-16402040	AT2G39280.1  CDS  gene_syn T16B24.8, T16B24_8  go_component intracellular|GO:0005622||IEA  go_process regulation of Rab GTPase activity|GO:0032313||IEA  go_function RAB GTPase activator activity|GO:0005097||IEA  product RAB GTPase activator  note RAB GTPase activator; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: RabGAP/TBC domain-containing protein (TAIR:AT3G55020.1); Has 4701 Blast hits to 4645 proteins in 231 species: Archae - 15; Bacteria - 84; Metazoa - 2806; Fungi - 708; Plants - 245; Viruses - 9; Other Eukaryotes - 834 (source: NCBI BLink).  protein_id AT2G39280.1p  transcript_id AT2G39280.1  protein_id AT2G39280.1p  transcript_id AT2G39280.1  
At2g39290	chr2:016407274	0.0	W/16407274-16407646,16407927-16408024,16408108-16408158,16408276-16408389,16408484-16408540,16408643-16408840	AT2G39290.1  CDS  gene_syn PGP1, PGPS1, PGS1, PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1, T16B24.7, T16B24_7  gene PGP1  function Encodes a phosphatidylglycerolphosphate synthase 2C which is dual-targeted into chloroplasts and mitochondria. Mutant plants have mutant chloroplasts but normal mitochondria.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component mitochondrion|GO:0005739|12609031|IDA  go_component chloroplast|GO:0009507|12068104|ISS  go_component chloroplast|GO:0009507|12609031|IDA  go_process phosphatidylinositol biosynthetic process|GO:0006661|12068104|IMP  go_process phospholipid biosynthetic process|GO:0008654|12068104|IDA  go_process phospholipid biosynthetic process|GO:0008654|12609031|IMP  go_function CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity|GO:0008444|12068104|IDA  go_function CDP-alcohol phosphatidyltransferase activity|GO:0017169||ISS  product PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1); CDP-alcohol phosphatidyltransferase/ CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase  note PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1 (PGP1); FUNCTIONS IN: CDP-alcohol phosphatidyltransferase activity, CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity; INVOLVED IN: phosphatidylinositol biosynthetic process, phospholipid biosynthetic process; LOCATED IN: mitochondrion, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (InterPro:IPR004570), CDP-alcohol phosphatidyltransferase (InterPro:IPR000462); BEST Arabidopsis thaliana protein match is: PGPS2 (phosphatidylglycerolphosphate synthase 2); CDP-alcohol phosphatidyltransferase/ CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase (TAIR:AT3G55030.1); Has 5194 Blast hits to 5194 proteins in 1279 species: Archae - 0; Bacteria - 2644; Metazoa - 100; Fungi - 77; Plants - 55; Viruses - 0; Other Eukaryotes - 2318 (source: NCBI BLink).  protein_id AT2G39290.1p  transcript_id AT2G39290.1  protein_id AT2G39290.1p  transcript_id AT2G39290.1  
At2g39300	chr2:016412631	0.0	C/16412631-16412869,16410797-16412552,16410501-16410707,16410109-16410420	AT2G39300.1  CDS  gene_syn T16B24.6, T16B24_6  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55060.1); Has 43135 Blast hits to 24020 proteins in 1129 species: Archae - 561; Bacteria - 2946; Metazoa - 24255; Fungi - 2897; Plants - 1479; Viruses - 138; Other Eukaryotes - 10859 (source: NCBI BLink).  protein_id AT2G39300.1p  transcript_id AT2G39300.1  protein_id AT2G39300.1p  transcript_id AT2G39300.1  
At2g39310	chr2:016416123	0.0	C/16416123-16416323,16415338-16415799,16414606-16415064,16414262-16414516	AT2G39310.1  CDS  gene_syn JACALIN-RELATED LECTIN 22, JAL22, T16B24.5, T16B24_5  gene JAL22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product JAL22 (JACALIN-RELATED LECTIN 22)  note JACALIN-RELATED LECTIN 22 (JAL22); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: JAL23 (JACALIN-RELATED LECTIN 23) (TAIR:AT2G39330.1); Has 1413 Blast hits to 501 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1410; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G39310.1p  transcript_id AT2G39310.1  protein_id AT2G39310.1p  transcript_id AT2G39310.1  
At2g39310	chr2:016416123	0.0	C/16416123-16416323,16415338-16415799,16414606-16415064,16414262-16414516	AT2G39310.3  CDS  gene_syn JACALIN-RELATED LECTIN 22, JAL22, T16B24.5, T16B24_5  gene JAL22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product JAL22 (JACALIN-RELATED LECTIN 22)  note JACALIN-RELATED LECTIN 22 (JAL22); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, D bilateral stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: JAL23 (JACALIN-RELATED LECTIN 23) (TAIR:AT2G39330.1).  protein_id AT2G39310.3p  transcript_id AT2G39310.3  protein_id AT2G39310.3p  transcript_id AT2G39310.3  
At2g39310	chr2:016416123	0.0	C/16416123-16416323,16415688-16415799,16415338-16415597,16414606-16415064,16414262-16414516	AT2G39310.2  CDS  gene_syn JACALIN-RELATED LECTIN 22, JAL22, T16B24.5, T16B24_5  gene JAL22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product JAL22 (JACALIN-RELATED LECTIN 22)  note JACALIN-RELATED LECTIN 22 (JAL22); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: JAL23 (JACALIN-RELATED LECTIN 23) (TAIR:AT2G39330.1); Has 1240 Blast hits to 485 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1238; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G39310.2p  transcript_id AT2G39310.2  protein_id AT2G39310.2p  transcript_id AT2G39310.2  
At2g39320	chr2:016418491	0.0	C/16418491-16418517,16418317-16418391,16417952-16418171,16417592-16417839	AT2G39320.1  CDS  gene_syn T16B24.4, T16B24_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function cysteine-type peptidase activity|GO:0008234||ISS  product OTU-like cysteine protease family protein  note OTU-like cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, C globular stage, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: OTU-like cysteine protease family protein (TAIR:AT5G03330.2); Has 37762 Blast hits to 12976 proteins in 690 species: Archae - 77; Bacteria - 1792; Metazoa - 16806; Fungi - 3589; Plants - 1270; Viruses - 149; Other Eukaryotes - 14079 (source: NCBI BLink).  protein_id AT2G39320.1p  transcript_id AT2G39320.1  protein_id AT2G39320.1p  transcript_id AT2G39320.1  
At2g39330	chr2:016421373	0.0	C/16421373-16421573,16420702-16421169,16420136-16420591,16419787-16420041	AT2G39330.1  CDS  gene_syn JACALIN-RELATED LECTIN 23, JAL23, T16B24.3, T16B24_3  gene JAL23  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product JAL23 (JACALIN-RELATED LECTIN 23)  note JACALIN-RELATED LECTIN 23 (JAL23); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: JAL22 (JACALIN-RELATED LECTIN 22) (TAIR:AT2G39310.3); Has 1373 Blast hits to 506 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1368; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G39330.1p  transcript_id AT2G39330.1  protein_id AT2G39330.1p  transcript_id AT2G39330.1  
At2g39340	chr2:016424043	0.0	W/16424043-16424099,16424766-16425665,16425967-16426386,16426533-16426634,16426894-16426991,16427115-16427283,16427444-16427926,16428008-16428148,16428276-16428335,16428704-16428834,16429117-16429250,16429346-16429575,16429676-16429771	AT2G39340.1  CDS  gene_syn T16B24.2, T16B24_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SAC3/GANP family protein  note SAC3/GANP family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro:IPR005062); BEST Arabidopsis thaliana protein match is: RNA binding / nucleic acid binding (TAIR:AT1G33680.1); Has 6778 Blast hits to 5077 proteins in 351 species: Archae - 2; Bacteria - 279; Metazoa - 3350; Fungi - 1332; Plants - 367; Viruses - 26; Other Eukaryotes - 1422 (source: NCBI BLink).  protein_id AT2G39340.1p  transcript_id AT2G39340.1  protein_id AT2G39340.1p  transcript_id AT2G39340.1  
At2g39350	chr2:016430174	0.0	C/16430174-16432396	AT2G39350.1  CDS  gene_syn T16B24.1, T16B24_1  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to nematode|GO:0009624|16478044|IEP  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ABC transporter family protein  note ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: response to nematode; LOCATED IN: plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 (InterPro:IPR000412), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATPase, coupled to transmembrane movement of substances (TAIR:AT3G55090.1); Has 222685 Blast hits to 204148 proteins in 2619 species: Archae - 4170; Bacteria - 154873; Metazoa - 7328; Fungi - 4017; Plants - 2628; Viruses - 9; Other Eukaryotes - 49660 (source: NCBI BLink).  protein_id AT2G39350.1p  transcript_id AT2G39350.1  protein_id AT2G39350.1p  transcript_id AT2G39350.1  
At2g39360	chr2:016437592	0.0	C/16437592-16440039	AT2G39360.1  CDS  gene_syn F12L6.2, F12L6_2  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT3G46290.1); Has 84375 Blast hits to 83314 proteins in 3128 species: Archae - 42; Bacteria - 7344; Metazoa - 37605; Fungi - 6499; Plants - 18436; Viruses - 346; Other Eukaryotes - 14103 (source: NCBI BLink).  protein_id AT2G39360.1p  transcript_id AT2G39360.1  protein_id AT2G39360.1p  transcript_id AT2G39360.1  
At2g39370	chr2:016444280	0.0	C/16444280-16445266	AT2G39370.1  CDS  gene_syn F12L6.3, F12L6_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37380.1); Has 109 Blast hits to 103 proteins in 30 species: Archae - 0; Bacteria - 31; Metazoa - 12; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT2G39370.1p  transcript_id AT2G39370.1  protein_id AT2G39370.1p  transcript_id AT2G39370.1  
At2g39380	chr2:016447096	0.0	C/16447096-16449009	AT2G39380.1  CDS  gene_syn ATEXO70H2, EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H2, F12L6.4, F12L6_4  gene ATEXO70H2  function A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.  go_component exocyst|GO:0000145||IEA  go_process exocytosis|GO:0006887||IEA  go_component exocyst|GO:0000145||ISS  go_process vesicle docking during exocytosis|GO:0006904||ISS  go_function protein binding|GO:0005515||ISS  product ATEXO70H2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H2); protein binding  note EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H2 (ATEXO70H2); FUNCTIONS IN: protein binding; INVOLVED IN: exocytosis, vesicle docking during exocytosis; LOCATED IN: exocyst; EXPRESSED IN: leaf apex, hypocotyl, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: ATEXO70H1 (exocyst subunit EXO70 family protein H1); protein binding (TAIR:AT3G55150.1); Has 521 Blast hits to 520 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 34; Plants - 368; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G39380.1p  transcript_id AT2G39380.1  protein_id AT2G39380.1p  transcript_id AT2G39380.1  
At2g39390	chr2:016451759	0.0	C/16451759-16451762,16451524-16451659,16450983-16451139,16450803-16450877	AT2G39390.1  CDS  gene_syn F12L6.5, F12L6_5  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L35 (RPL35B)  note 60S ribosomal protein L35 (RPL35B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L29 (InterPro:IPR001854), Ribosomal protein L29, conserved site (InterPro:IPR018254); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L35 (RPL35D) (TAIR:AT5G02610.1); Has 796 Blast hits to 796 proteins in 298 species: Archae - 108; Bacteria - 128; Metazoa - 237; Fungi - 93; Plants - 90; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink).  protein_id AT2G39390.1p  transcript_id AT2G39390.1  protein_id AT2G39390.1p  transcript_id AT2G39390.1  
At2g39400	chr2:016452719	0.0	W/16452719-16452736,16452892-16453018,16453116-16453262,16453347-16453477,16453934-16454071,16454163-16454261,16454375-16454650	AT2G39400.1  CDS  gene_syn F12L6.6, F12L6_6  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: esterase/lipase/thioesterase family protein (TAIR:AT3G55180.1); Has 2812 Blast hits to 2804 proteins in 821 species: Archae - 19; Bacteria - 1742; Metazoa - 126; Fungi - 87; Plants - 318; Viruses - 34; Other Eukaryotes - 486 (source: NCBI BLink).  protein_id AT2G39400.1p  transcript_id AT2G39400.1  protein_id AT2G39400.1p  transcript_id AT2G39400.1  
At2g39410	chr2:016455667	0.0	W/16455667-16455669,16455769-16455801,16455879-16456005,16456199-16456345,16456564-16456694,16457412-16457549,16457670-16457768,16457942-16458217	AT2G39410.2  CDS  gene_syn F12L6.7, F12L6_7  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: esterase/lipase/thioesterase family protein (TAIR:AT2G39420.1); Has 2860 Blast hits to 2856 proteins in 795 species: Archae - 17; Bacteria - 1871; Metazoa - 104; Fungi - 90; Plants - 325; Viruses - 40; Other Eukaryotes - 413 (source: NCBI BLink).  protein_id AT2G39410.2p  transcript_id AT2G39410.2  protein_id AT2G39410.2p  transcript_id AT2G39410.2  
At2g39410	chr2:016455667	0.0	W/16455667-16455669,16455769-16455801,16455879-16456005,16456199-16456401	AT2G39410.1  CDS  gene_syn F12L6.7, F12L6_7  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: esterase/lipase/thioesterase family protein (TAIR:AT2G39420.1); Has 697 Blast hits to 697 proteins in 224 species: Archae - 2; Bacteria - 284; Metazoa - 86; Fungi - 0; Plants - 207; Viruses - 29; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT2G39410.1p  transcript_id AT2G39410.1  protein_id AT2G39410.1p  transcript_id AT2G39410.1  
At2g39415	chr2:016458607	0.0	C/16458607-16458966	AT2G39415.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18150.1); Has 964 Blast hits to 951 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 964; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G39415.1p  transcript_id AT2G39415.1  protein_id AT2G39415.1p  transcript_id AT2G39415.1  
At2g39420	chr2:016460442	0.0	W/16460442-16460444,16460557-16460589,16460684-16460810,16460907-16461053,16461336-16461466,16462184-16462321,16462413-16462511,16462597-16462872	AT2G39420.1  CDS  gene_syn F12L6.8, F12L6_8  go_function catalytic activity|GO:0003824||ISS  product esterase/lipase/thioesterase family protein  note esterase/lipase/thioesterase family protein; FUNCTIONS IN: catalytic activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT2G39410.2); Has 2754 Blast hits to 2750 proteins in 815 species: Archae - 17; Bacteria - 1873; Metazoa - 111; Fungi - 90; Plants - 263; Viruses - 34; Other Eukaryotes - 366 (source: NCBI BLink).  protein_id AT2G39420.1p  transcript_id AT2G39420.1  protein_id AT2G39420.1p  transcript_id AT2G39420.1  
At2g39430	chr2:016463422	0.0	W/16463422-16464390	AT2G39430.1  CDS  gene_syn F12L6.9, F12L6_9  go_component endomembrane system|GO:0012505||IEA  go_process lignan biosynthetic process|GO:0009807||ISS  go_function molecular_function|GO:0003674||ND  product disease resistance-responsive protein-related / dirigent protein-related  note disease resistance-responsive protein-related / dirigent protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lignan biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, hypocotyl, root, petiole, leaf; EXPRESSED DURING: LP.04 four leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: disease resistance-responsive family protein (TAIR:AT3G55230.1); Has 394 Blast hits to 394 proteins in 31 species: Archae - 2; Bacteria - 2; Metazoa - 0; Fungi - 2; Plants - 387; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G39430.1p  transcript_id AT2G39430.1  protein_id AT2G39430.1p  transcript_id AT2G39430.1  
At2g39435	chr2:016465902	0.0	C/16465902-16466492,16465518-16465698,16464806-16465428	AT2G39435.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53540.1); Has 168 Blast hits to 165 proteins in 30 species: Archae - 0; Bacteria - 12; Metazoa - 17; Fungi - 10; Plants - 115; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT2G39435.1p  transcript_id AT2G39435.1  protein_id AT2G39435.1p  transcript_id AT2G39435.1  
At2g39440	chr2:016468975	0.0	C/16468975-16469113,16468786-16468878,16468375-16468565,16468220-16468285	AT2G39440.1  CDS  gene_syn F12L6.10, F12L6_10  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell, pollen tube; CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has 147 Blast hits to 147 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 78; Fungi - 43; Plants - 16; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT2G39440.1p  transcript_id AT2G39440.1  protein_id AT2G39440.1p  transcript_id AT2G39440.1  
At2g39445	chr2:016471110	0.0	C/16471110-16471125,16470369-16470770,16470025-16470152	AT2G39445.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: PIG-P (InterPro:IPR013717), Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit (InterPro:IPR016542); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61280.1); Has 228 Blast hits to 228 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 60; Plants - 24; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT2G39445.1p  transcript_id AT2G39445.1  protein_id AT2G39445.1p  transcript_id AT2G39445.1  
At2g39450	chr2:016473570	0.0	C/16473570-16473735,16473115-16473224,16472764-16473009,16472483-16472563,16472169-16472402,16471744-16472091	AT2G39450.1  CDS  gene_syn ATMTP11, F12L6.11, F12L6_11, MTP11  gene MTP11  function Encodes a Golgi-localized manganese transporter that is involved in Mn tolerance. When expressed into yeast cells, this gene confer Mn<sup>2+</sup> and Cu<sup>2+</sup> tolerance.  go_component late endosome|GO:0005770|17559518|IDA  go_component Golgi apparatus|GO:0005794|17494768|IDA  go_component membrane|GO:0016020||ISS  go_process cation transport|GO:0006812||ISS  go_process response to manganese ion|GO:0010042|17494768|IMP  go_process response to manganese ion|GO:0010042|17559518|IDA  go_process response to manganese ion|GO:0010042|17559518|IGI  go_process cellular manganese ion homeostasis|GO:0030026|17494768|IMP  go_process response to copper ion|GO:0046688|17559518|IDA  go_function manganese ion transmembrane transporter activity|GO:0005384|17494768|IDA  go_function manganese ion transmembrane transporter activity|GO:0005384|17494768|IGI  go_function cation transmembrane transporter activity|GO:0008324||ISS  go_function manganese:hydrogen antiporter activity|GO:0010486|17559518|IDA  product MTP11; cation transmembrane transporter/ manganese ion transmembrane transporter/ manganese:hydrogen antiporter  note MTP11; FUNCTIONS IN: manganese:hydrogen antiporter activity, manganese ion transmembrane transporter activity, cation transmembrane transporter activity; INVOLVED IN: cellular manganese ion homeostasis, cation transport, response to manganese ion, response to copper ion; LOCATED IN: late endosome, Golgi apparatus, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: cation efflux family protein (TAIR:AT1G79520.1); Has 2790 Blast hits to 2786 proteins in 938 species: Archae - 89; Bacteria - 2160; Metazoa - 40; Fungi - 196; Plants - 104; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink).  protein_id AT2G39450.1p  transcript_id AT2G39450.1  protein_id AT2G39450.1p  transcript_id AT2G39450.1  
At2g39460	chr2:016475049	0.0	W/16475049-16475064,16475368-16475731,16475820-16475904	AT2G39460.1  CDS  gene_syn ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN L23A, ATRPL23A, F12L6.12, F12L6_12, RIBOSOMAL PROTEIN L23A, RIBOSOMAL PROTEIN L23AA, RPL23A, RPL23AA  gene RPL23AA  function Encodes a 60S ribosomal protein L23aA (AtrpL23aA). Paralog of RLPL23aB.  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_function nucleotide binding|GO:0000166||IEA  go_component intracellular|GO:0005622||ISS  go_component large ribosomal subunit|GO:0015934||TAS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_component cytosolic large ribosomal subunit|GO:0022625||ISS  go_process translation|GO:0006412||ISS  go_process translation|GO:0006412||TAS  go_process response to oxidative stress|GO:0006979|18566829|IEP  go_process response to cold|GO:0009409|18566829|IEP  go_process response to high light intensity|GO:0009644|18566829|IEP  go_process ribosome biogenesis|GO:0042254||ISS  go_function RNA binding|GO:0003723||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product RPL23AA (RIBOSOMAL PROTEIN L23AA); RNA binding / nucleotide binding / structural constituent of ribosome  note RIBOSOMAL PROTEIN L23AA (RPL23AA); FUNCTIONS IN: structural constituent of ribosome, RNA binding, nucleotide binding; INVOLVED IN: response to oxidative stress, response to high light intensity, response to cold, translation, ribosome biogenesis; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L23, conserved site (InterPro:IPR001014), Ribosomal protein L23/L15e, core (InterPro:IPR012678), Ribosomal protein L23/L25, N-terminal (InterPro:IPR005633), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ribosomal protein L25/L23 (InterPro:IPR013025); BEST Arabidopsis thaliana protein match is: RPL23AB (RIBOSOMAL PROTEIN L23AB); RNA binding / nucleotide binding / structural constituent of ribosome (TAIR:AT3G55280.2); Has 1923 Blast hits to 1923 proteins in 624 species: Archae - 218; Bacteria - 729; Metazoa - 344; Fungi - 98; Plants - 86; Viruses - 0; Other Eukaryotes - 448 (source: NCBI BLink).  protein_id AT2G39460.1p  transcript_id AT2G39460.1  protein_id AT2G39460.1p  transcript_id AT2G39460.1  
At2g39460	chr2:016475049	0.0	W/16475049-16475064,16475368-16475731,16475820-16475904	AT2G39460.2  CDS  gene_syn ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN L23A, ATRPL23A, F12L6.12, F12L6_12, RIBOSOMAL PROTEIN L23A, RIBOSOMAL PROTEIN L23AA, RPL23A, RPL23AA  gene RPL23AA  function Encodes a 60S ribosomal protein L23aA (AtrpL23aA). Paralog of RLPL23aB.  go_function nucleotide binding|GO:0000166||IEA  go_component intracellular|GO:0005622||ISS  go_component large ribosomal subunit|GO:0015934||TAS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_component cytosolic large ribosomal subunit|GO:0022625||ISS  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||ISS  go_process translation|GO:0006412||TAS  go_process response to oxidative stress|GO:0006979|18566829|IEP  go_process response to cold|GO:0009409|18566829|IEP  go_process response to high light intensity|GO:0009644|18566829|IEP  go_process ribosome biogenesis|GO:0042254||ISS  go_function RNA binding|GO:0003723||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product RPL23AA (RIBOSOMAL PROTEIN L23AA); RNA binding / nucleotide binding / structural constituent of ribosome  note RIBOSOMAL PROTEIN L23AA (RPL23AA); FUNCTIONS IN: structural constituent of ribosome, RNA binding, nucleotide binding; INVOLVED IN: response to oxidative stress, response to high light intensity, response to cold, translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, intracellular, large ribosomal subunit; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L23, conserved site (InterPro:IPR001014), Ribosomal protein L23/L15e, core (InterPro:IPR012678), Ribosomal protein L23/L25, N-terminal (InterPro:IPR005633), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ribosomal protein L25/L23 (InterPro:IPR013025); BEST Arabidopsis thaliana protein match is: RPL23AB (RIBOSOMAL PROTEIN L23AB); RNA binding / nucleotide binding / structural constituent of ribosome (TAIR:AT3G55280.2).  protein_id AT2G39460.2p  transcript_id AT2G39460.2  protein_id AT2G39460.2p  transcript_id AT2G39460.2  
At2g39470	chr2:016476335	0.0	W/16476335-16476394,16476477-16476534,16476644-16476748,16476842-16476915,16477002-16477124,16477212-16477283,16477368-16477464,16477550-16477653	AT2G39470.2  CDS  gene_syn F12L6.13, F12L6_13, PPL2, PsbP-like protein 2  gene PPL2  go_component chloroplast|GO:0009507|18431481|IDA  go_process photosynthesis|GO:0015979||IEA  go_function calcium ion binding|GO:0005509||IEA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  go_component oxygen evolving complex|GO:0009654||ISS  go_component chloroplast photosystem II|GO:0030095||ISS  product PPL2 (PsbP-like protein 2); calcium ion binding  note PsbP-like protein 2 (PPL2); FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast, oxygen evolving complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); BEST Arabidopsis thaliana protein match is: PPL1 (PsbP-like protein 1); calcium ion binding (TAIR:AT3G55330.1); Has 252 Blast hits to 252 proteins in 61 species: Archae - 0; Bacteria - 86; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT2G39470.2p  transcript_id AT2G39470.2  protein_id AT2G39470.2p  transcript_id AT2G39470.2  
At2g39470	chr2:016476335	0.0	W/16476335-16476394,16476477-16476534,16476644-16476748,16476842-16476915,16477002-16477124,16477212-16477283,16477370-16477402	AT2G39470.3  CDS  gene_syn F12L6.13, F12L6_13, PPL2, PsbP-like protein 2  gene PPL2  go_component chloroplast|GO:0009507|18431481|IDA  go_process photosynthesis|GO:0015979||IEA  go_function calcium ion binding|GO:0005509||IEA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  go_component oxygen evolving complex|GO:0009654||ISS  go_component chloroplast photosystem II|GO:0030095||ISS  product PPL2 (PsbP-like protein 2); calcium ion binding  note PsbP-like protein 2 (PPL2); FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast, oxygen evolving complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); BEST Arabidopsis thaliana protein match is: PPL1 (PsbP-like protein 1); calcium ion binding (TAIR:AT3G55330.1); Has 54 Blast hits to 54 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G39470.3p  transcript_id AT2G39470.3  protein_id AT2G39470.3p  transcript_id AT2G39470.3  
At2g39470	chr2:016476335	0.0	W/16476335-16476394,16476477-16476558,16476644-16476748,16476842-16476915,16477002-16477124,16477212-16477283,16477368-16477464,16477550-16477653	AT2G39470.1  CDS  gene_syn F12L6.13, F12L6_13, PPL2, PsbP-like protein 2  gene PPL2  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_process photosynthesis|GO:0015979||IEA  go_function calcium ion binding|GO:0005509||IEA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  go_component oxygen evolving complex|GO:0009654||ISS  go_component chloroplast photosystem II|GO:0030095||ISS  product PPL2 (PsbP-like protein 2); calcium ion binding  note PsbP-like protein 2 (PPL2); FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); BEST Arabidopsis thaliana protein match is: PPL1 (PsbP-like protein 1); calcium ion binding (TAIR:AT3G55330.1); Has 254 Blast hits to 254 proteins in 62 species: Archae - 0; Bacteria - 86; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT2G39470.1p  transcript_id AT2G39470.1  protein_id AT2G39470.1p  transcript_id AT2G39470.1  
At2g39480	chr2:016484426	0.0	C/16484426-16484827,16483667-16483721,16483377-16483552,16483063-16483263,16482229-16482488,16481821-16482131,16481485-16481705,16481052-16481392,16480098-16480882,16479757-16479998,16478249-16479478	AT2G39480.1  CDS  gene_syn F12L6.14, F12L6_14, P-GLYCOPROTEIN 6, PGP6  gene PGP6  go_component plasma membrane|GO:0005886|17317660|IDA  go_process transport|GO:0006810||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product PGP6 (P-GLYCOPROTEIN 6); ATPase, coupled to transmembrane movement of substances  note P-GLYCOPROTEIN 6 (PGP6); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PGP20 (P-GLYCOPROTEIN 20); ATPase, coupled to transmembrane movement of substances (TAIR:AT3G55320.1); Has 425152 Blast hits to 214184 proteins in 2609 species: Archae - 7629; Bacteria - 293193; Metazoa - 15627; Fungi - 7875; Plants - 4410; Viruses - 13; Other Eukaryotes - 96405 (source: NCBI BLink).  protein_id AT2G39480.1p  transcript_id AT2G39480.1  protein_id AT2G39480.1p  transcript_id AT2G39480.1  
At2g39490	chr2:016487655	0.0	C/16487655-16488464,16487422-16487580,16487151-16487345	AT2G39490.1  CDS  gene_syn F12L6.15, F12L6_15  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G61330.1); Has 52 Blast hits to 52 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G39490.1p  transcript_id AT2G39490.1  protein_id AT2G39490.1p  transcript_id AT2G39490.1  
At2g39500	chr2:016489091	0.0	W/16489091-16489180,16489297-16489374	AT2G39500.1  CDS  gene_syn F12L6.16, F12L6_16  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G39500.1p  transcript_id AT2G39500.1  protein_id AT2G39500.1p  transcript_id AT2G39500.1  
At2g39510	chr2:016492907	0.0	C/16492907-16493085,16492669-16492731,16492465-16492581,16492149-16492389,16491898-16492059,16491648-16491799,16491358-16491568	AT2G39510.1  CDS  gene_syn F12L6.17, F12L6_17  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product nodulin MtN21 family protein  note nodulin MtN21 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT2G37460.1); Has 2946 Blast hits to 2932 proteins in 447 species: Archae - 24; Bacteria - 1167; Metazoa - 4; Fungi - 0; Plants - 637; Viruses - 0; Other Eukaryotes - 1114 (source: NCBI BLink).  protein_id AT2G39510.1p  transcript_id AT2G39510.1  protein_id AT2G39510.1p  transcript_id AT2G39510.1  
At2g39518	chr2:016496759	0.0	C/16496759-16496937,16496372-16496498,16496029-16496247	AT2G39518.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: integral membrane protein, putative (TAIR:AT2G39530.1); Has 80 Blast hits to 80 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G39518.1p  transcript_id AT2G39518.1  protein_id AT2G39518.1p  transcript_id AT2G39518.1  
At2g39520	chr2:016496813	0.0	W/16496813-16496948,16497467-16497621	AT2G39520.1  CDS  gene_syn F12L6.18, F12L6_18  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G39520.1p  transcript_id AT2G39520.1  protein_id AT2G39520.1p  transcript_id AT2G39520.1  
At2g39530	chr2:016499223	0.0	C/16499223-16499401,16498992-16499118,16498659-16498889	AT2G39530.1  CDS  gene_syn F12L6.19, F12L6_19  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane protein, putative  note integral membrane protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: sepal, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G39518.1); Has 97 Blast hits to 97 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G39530.1p  transcript_id AT2G39530.1  protein_id AT2G39530.1p  transcript_id AT2G39530.1  
At2g39540	chr2:016500866	0.0	W/16500866-16500947,16501060-16501241	AT2G39540.1  CDS  gene_syn F12L6.20, F12L6_20  go_component endomembrane system|GO:0012505||IEA  go_process response to gibberellin stimulus|GO:0009739||ISS  product gibberellin-regulated family protein  note gibberellin-regulated family protein; INVOLVED IN: response to gibberellin stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage, LP.10 ten leaves visible; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10588.2); Has 250 Blast hits to 250 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 250; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G39540.1p  transcript_id AT2G39540.1  protein_id AT2G39540.1p  transcript_id AT2G39540.1  
At2g39550	chr2:016501666	0.0	W/16501666-16501908,16501997-16502072,16502167-16502225,16502321-16502460,16502659-16502714,16502807-16502883,16502986-16503031,16503289-16503413,16503514-16503581,16503658-16503745,16503995-16504144	AT2G39550.1  CDS  gene_syn ATGGT-IB, GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, GGB, PGGT-I  gene PGGT-I  function encodes the beta subunit of geranylgeranyl transferase (GGT-IB), involved in both ABA-mediated and auxin signaling pathways.  go_component CAAX-protein geranylgeranyltransferase complex|GO:0005953|11500541|IPI  go_process response to water deprivation|GO:0009414|16183844|IMP  go_process response to auxin stimulus|GO:0009733|16183844|IMP  go_process response to abscisic acid stimulus|GO:0009737|16183844|IMP  go_process negative regulation of abscisic acid mediated signaling|GO:0009788|16183844|TAS  go_process protein geranylgeranylation|GO:0018344|11500541|IDA  go_process protein amino acid geranylgeranylation|GO:0018348|16183844|IMP  go_function CAAX-protein geranylgeranyltransferase activity|GO:0004662|11500541|IDA  go_function CAAX-protein geranylgeranyltransferase activity|GO:0004662|16183844|IMP  go_function protein heterodimerization activity|GO:0046982|11500541|IPI  product PGGT-I; CAAX-protein geranylgeranyltransferase/ protein heterodimerization  note PGGT-I; FUNCTIONS IN: protein heterodimerization activity, CAAX-protein geranylgeranyltransferase activity; INVOLVED IN: in 6 processes; LOCATED IN: CAAX-protein geranylgeranyltransferase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative (TAIR:AT5G12210.2); Has 1133 Blast hits to 988 proteins in 182 species: Archae - 0; Bacteria - 16; Metazoa - 503; Fungi - 284; Plants - 110; Viruses - 0; Other Eukaryotes - 220 (source: NCBI BLink).  protein_id AT2G39550.1p  transcript_id AT2G39550.1  protein_id AT2G39550.1p  transcript_id AT2G39550.1  
At2g39560	chr2:016505124	0.0	C/16505124-16505825	AT2G39560.1  CDS  gene_syn F12L6.22, F12L6_22  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: F mature embryo stage, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 27 Blast hits to 27 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G39560.1p  transcript_id AT2G39560.1  protein_id AT2G39560.1p  transcript_id AT2G39560.1  
At2g39570	chr2:016507963	0.0	W/16507963-16508116,16508271-16508489,16508579-16508684,16508772-16509096,16509218-16509502,16509595-16509741	AT2G39570.1  CDS  gene_syn F12L6.23, F12L6_23  go_process metabolic process|GO:0008152||IEA  go_function amino acid binding|GO:0016597||IEA  product ACT domain-containing protein  note ACT domain-containing protein; FUNCTIONS IN: amino acid binding; INVOLVED IN: metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: ACT domain-containing protein (TAIR:AT2G36840.1); Has 256 Blast hits to 222 proteins in 28 species: Archae - 0; Bacteria - 28; Metazoa - 0; Fungi - 0; Plants - 199; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT2G39570.1p  transcript_id AT2G39570.1  protein_id AT2G39570.1p  transcript_id AT2G39570.1  
At2g39580	chr2:016510540	0.0	W/16510540-16510617,16510958-16511039,16511127-16511882,16512008-16512129,16512257-16512403,16512460-16513336,16513612-16514076,16514153-16514460,16514760-16514897,16515188-16516948	AT2G39580.1  CDS  gene_syn F12L6.24, F12L6_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 122 Blast hits to 101 proteins in 42 species: Archae - 0; Bacteria - 69; Metazoa - 26; Fungi - 4; Plants - 12; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT2G39580.1p  transcript_id AT2G39580.1  protein_id AT2G39580.1p  transcript_id AT2G39580.1  
At2g39590	chr2:016518115	0.0	C/16518115-16518265,16517798-16517958,16517588-16517686	AT2G39590.1  CDS  gene_syn F12L6.25, F12L6_25  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S15A (RPS15aC)  note 40S ribosomal protein S15A (RPS15aC); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8 (InterPro:IPR000630); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S15A (RPS15aF) (TAIR:AT5G59850.1); Has 2591 Blast hits to 2591 proteins in 841 species: Archae - 184; Bacteria - 1093; Metazoa - 327; Fungi - 129; Plants - 171; Viruses - 0; Other Eukaryotes - 687 (source: NCBI BLink).  protein_id AT2G39590.1p  transcript_id AT2G39590.1  protein_id AT2G39590.1p  transcript_id AT2G39590.1  
At2g39600	chr2:016518564	0.0	C/16518564-16518635	AT2G39600.1  tRNA  gene_syn 31456.TRNA-CYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Cys (anticodon: GCA)  transcript_id AT2G39600.1  
At2g39610	chr2:016518769	0.0	W/16518769-16518840	AT2G39610.1  tRNA  gene_syn 31456.TRNA-CYS-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Cys (anticodon: GCA)  transcript_id AT2G39610.1  
At2g39620	chr2:016518968	0.0	C/16518968-16521478	AT2G39620.1  CDS  gene_syn F12L6.28, F12L6_28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G09040.1); Has 20042 Blast hits to 4878 proteins in 118 species: Archae - 0; Bacteria - 2; Metazoa - 38; Fungi - 56; Plants - 19570; Viruses - 0; Other Eukaryotes - 376 (source: NCBI BLink).  protein_id AT2G39620.1p  transcript_id AT2G39620.1  protein_id AT2G39620.1p  transcript_id AT2G39620.1  
At2g39630	chr2:016524449	0.0	C/16524449-16524561,16524321-16524369,16523694-16523800,16523492-16523537,16523068-16523202,16522850-16522939,16522637-16522768,16522438-16522521,16522280-16522344,16522008-16522197	AT2G39630.1  CDS  gene_syn F12L6.29, F12L6_29  function Encodes a putative dolichyl-phosphate &beta;-glucosyltransferase.  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process protein amino acid glycosylation|GO:0006486||ISS  go_process biosynthetic process|GO:0009058||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyl transferase family 2 protein  note glycosyl transferase family 2 protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process, protein amino acid glycosylation; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putative (TAIR:AT1G20575.1); Has 8842 Blast hits to 8839 proteins in 1311 species: Archae - 371; Bacteria - 5530; Metazoa - 243; Fungi - 168; Plants - 47; Viruses - 20; Other Eukaryotes - 2463 (source: NCBI BLink).  protein_id AT2G39630.1p  transcript_id AT2G39630.1  protein_id AT2G39630.1p  transcript_id AT2G39630.1  
At2g39630	chr2:016524449	0.0	C/16524449-16524561,16524321-16524369,16523694-16523800,16523492-16523537,16523068-16523202,16522850-16522939,16522637-16522768,16522497-16522535	AT2G39630.2  CDS  gene_syn F12L6.29, F12L6_29  function Encodes a putative dolichyl-phosphate &beta;-glucosyltransferase.  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process protein amino acid glycosylation|GO:0006486||ISS  go_process biosynthetic process|GO:0009058||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyl transferase family 2 protein  note glycosyl transferase family 2 protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process, protein amino acid glycosylation; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putative (TAIR:AT1G20575.1); Has 8183 Blast hits to 8181 proteins in 1275 species: Archae - 294; Bacteria - 5189; Metazoa - 239; Fungi - 168; Plants - 46; Viruses - 20; Other Eukaryotes - 2227 (source: NCBI BLink).  protein_id AT2G39630.2p  transcript_id AT2G39630.2  protein_id AT2G39630.2p  transcript_id AT2G39630.2  
At2g39640	chr2:016526548	0.0	C/16526548-16527012,16525171-16526355	AT2G39640.1  CDS  gene_syn F12L6.1  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative (TAIR:AT3G55430.1); Has 2456 Blast hits to 1754 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 66; Plants - 2387; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G39640.1p  transcript_id AT2G39640.1  protein_id AT2G39640.1p  transcript_id AT2G39640.1  
At2g39650	chr2:016529071	0.0	C/16529071-16529274,16528635-16528851,16528094-16528548	AT2G39650.1  CDS  gene_syn F12L6.31, F12L6_31  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14620.1); Has 215 Blast hits to 215 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 213; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G39650.1p  transcript_id AT2G39650.1  protein_id AT2G39650.1p  transcript_id AT2G39650.1  
At2g39660	chr2:016531943	0.0	W/16531943-16531991,16532113-16532420,16532513-16532648,16532732-16532874,16532954-16533077,16533174-16533601	AT2G39660.1  CDS  gene_syn BIK1, BOTRYTIS-INDUCED KINASE1, F12L6.32, F12L6_32  gene BIK1  function Encodes a plasma membrane-localized ser/thr protein kinase that is a crucial component of host response signaling required to activate the resistance responses to Botrytis and A. brassicicola infection. It is likely a negative regulator of salicylic acid accumulation and basal defense against virulent bacterial pathogens.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleolus|GO:0005730|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component plasma membrane|GO:0005886|16339855|IDA  go_process response to fungus|GO:0009620|16339855|IEP  go_process protein amino acid autophosphorylation|GO:0046777|16339855|IDA  go_process defense response to fungus|GO:0050832|16339855|IMP  go_function kinase activity|GO:0016301|16339855|IDA  go_function kinase activity|GO:0016301||ISS  product BIK1 (BOTRYTIS-INDUCED KINASE1); kinase  note BOTRYTIS-INDUCED KINASE1 (BIK1); FUNCTIONS IN: kinase activity; INVOLVED IN: defense response to fungus, protein amino acid autophosphorylation, N-terminal protein myristoylation, response to fungus; LOCATED IN: nucleolus, nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT3G55450.1); Has 84283 Blast hits to 83267 proteins in 2995 species: Archae - 52; Bacteria - 7531; Metazoa - 37181; Fungi - 6363; Plants - 18695; Viruses - 337; Other Eukaryotes - 14124 (source: NCBI BLink).  protein_id AT2G39660.1p  transcript_id AT2G39660.1  protein_id AT2G39660.1p  transcript_id AT2G39660.1  
At2g39670	chr2:016534303	0.0	W/16534303-16534540,16534611-16534700,16534802-16534899,16534998-16535102,16535192-16535278,16535626-16535742,16536017-16536120,16536349-16536488,16536577-16536713,16536807-16536986	AT2G39670.2  CDS  gene_syn F17A14.4, F17A14_4  go_component cytoplasm|GO:0005737||IEA  go_process rRNA processing|GO:0006364||IEA  go_function catalytic activity|GO:0003824||IEA  go_function RNA methyltransferase activity|GO:0008173||IEA  go_function iron-sulfur cluster binding|GO:0051536||IEA  product radical SAM domain-containing protein  note radical SAM domain-containing protein; FUNCTIONS IN: iron-sulfur cluster binding, catalytic activity, RNA methyltransferase activity; INVOLVED IN: rRNA processing; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Conserved hypothetical protein CHP00048 (InterPro:IPR004383), Radical SAM (InterPro:IPR007197); BEST Arabidopsis thaliana protein match is: radical SAM domain-containing protein (TAIR:AT3G19630.1); Has 4690 Blast hits to 4686 proteins in 1263 species: Archae - 5; Bacteria - 2900; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 5; Other Eukaryotes - 1705 (source: NCBI BLink).  protein_id AT2G39670.2p  transcript_id AT2G39670.2  protein_id AT2G39670.2p  transcript_id AT2G39670.2  
At2g39670	chr2:016534303	0.0	W/16534303-16534545,16534625-16534700,16534802-16534899,16534998-16535102,16535192-16535278,16535626-16535742,16536017-16536120,16536349-16536488,16536577-16536713,16536807-16536986	AT2G39670.1  CDS  gene_syn F17A14.4, F17A14_4  go_component cytoplasm|GO:0005737||IEA  go_process rRNA processing|GO:0006364||IEA  go_function catalytic activity|GO:0003824||IEA  go_function RNA methyltransferase activity|GO:0008173||IEA  go_function iron-sulfur cluster binding|GO:0051536||IEA  product radical SAM domain-containing protein  note radical SAM domain-containing protein; FUNCTIONS IN: iron-sulfur cluster binding, catalytic activity, RNA methyltransferase activity; INVOLVED IN: rRNA processing; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Conserved hypothetical protein CHP00048 (InterPro:IPR004383), Radical SAM (InterPro:IPR007197); BEST Arabidopsis thaliana protein match is: radical SAM domain-containing protein (TAIR:AT3G19630.1); Has 4715 Blast hits to 4711 proteins in 1264 species: Archae - 5; Bacteria - 2904; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 5; Other Eukaryotes - 1726 (source: NCBI BLink).  protein_id AT2G39670.1p  transcript_id AT2G39670.1  protein_id AT2G39670.1p  transcript_id AT2G39670.1  
At2g39675	chr2:016537288	0.0	C/16537288-16538277	AT2G39675.1  ncRNA  gene_syn TAS1C, TRANS-ACTING SIRNA 1C  gene TAS1C  function Trans-acting siRNA1c primary transcript (TAS1c). Gb: AY922999  go_component cellular_component|GO:0005575||ND  go_process RNA interference|GO:0016246|15851028|IDA  go_function molecular_function|GO:0003674||ND  product TAS1C (TRANS-ACTING SIRNA 1C); other RNA  transcript_id AT2G39675.1  
At2g39681	chr2:016539384	0.0	C/16539384-16540417	AT2G39681.1  ncRNA  gene_syn TAS2, TRANS-ACTING SIRNA 2  gene TAS2  function Trans-acting siRNA primary transcript. RDR6-dependent trans-acting siRNA-generating locus. Regulated by miR173. Produces at least four distinct ta-siRNAs directed against PPR genes.  go_process RNA interference|GO:0016246|15851028|IDA  product TAS2 (TRANS-ACTING SIRNA 2); other RNA  transcript_id AT2G39681.1  
At2g39690	chr2:016541165	0.0	W/16541165-16541281,16541363-16541690,16541765-16542155,16542251-16542350,16542446-16542505,16542600-16542683,16542765-16542872,16542959-16543267	AT2G39690.1  CDS  gene_syn F17A14.6, F17A14_6  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12540.1); Has 367 Blast hits to 351 proteins in 61 species: Archae - 0; Bacteria - 53; Metazoa - 34; Fungi - 0; Plants - 259; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT2G39690.1p  transcript_id AT2G39690.1  protein_id AT2G39690.1p  transcript_id AT2G39690.1  
At2g39690	chr2:016541489	0.0	W/16541489-16541690,16541765-16542155,16542251-16542350,16542446-16542505,16542600-16542683,16542762-16542872,16542959-16543267	AT2G39690.2  CDS  gene_syn F17A14.6, F17A14_6  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12540.1); Has 342 Blast hits to 341 proteins in 59 species: Archae - 0; Bacteria - 52; Metazoa - 34; Fungi - 0; Plants - 240; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT2G39690.2p  transcript_id AT2G39690.2  protein_id AT2G39690.2p  transcript_id AT2G39690.2  
At2g39700	chr2:016545290	0.0	C/16545290-16545434,16544876-16545194,16544246-16544555	AT2G39700.1  CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN A4, ATEXP4, ATEXPA4, ATHEXP ALPHA 1.6, F17A14.7, F17A14_7  gene ATEXPA4  function putative expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process syncytium formation|GO:0006949|16942607|IEP  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828||ISS  go_process plant-type cell wall modification during multidimensional cell growth|GO:0009831||ISS  product ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4)  note ARABIDOPSIS THALIANA EXPANSIN A4 (ATEXPA4); INVOLVED IN: syncytium formation, plant-type cell wall modification during multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16) (TAIR:AT3G55500.1); Has 1434 Blast hits to 1433 proteins in 125 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 30; Plants - 1378; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT2G39700.1p  transcript_id AT2G39700.1  protein_id AT2G39700.1p  transcript_id AT2G39700.1  
At2g39705	chr2:016557038	0.0	W/16557038-16557301	AT2G39705.1  CDS  gene_syn DEVIL 11, DVL11, ROTUNDIFOLIA LIKE 8, RTFL8  gene RTFL8  go_component chloroplast|GO:0009507||IEA  go_process shoot development|GO:0048367|14871303|ISS  go_function molecular_function|GO:0003674||ND  product RTFL8 (ROTUNDIFOLIA LIKE 8)  note ROTUNDIFOLIA LIKE 8 (RTFL8); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: shoot development; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); BEST Arabidopsis thaliana protein match is: RTFL7 (ROTUNDIFOLIA LIKE 7) (TAIR:AT3G55515.1); Has 91 Blast hits to 91 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G39705.1p  transcript_id AT2G39705.1  protein_id AT2G39705.1p  transcript_id AT2G39705.1  
At2g39710	chr2:016562051	0.0	C/16562051-16563379	AT2G39710.1  CDS  gene_syn F17A14.9  function Encodes a Cysteine-rich peptide (CRP) family protein  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: PCS1 (PROMOTION OF CELL SURVIVAL 1); aspartic-type endopeptidase/ peptidase (TAIR:AT5G02190.1); Has 1622 Blast hits to 1614 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 440; Fungi - 50; Plants - 1083; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT2G39710.1p  transcript_id AT2G39710.1  protein_id AT2G39710.1p  transcript_id AT2G39710.1  
At2g39720	chr2:016567506	0.0	C/16567506-16568711	AT2G39720.1  CDS  gene_syn RHC2A, RING-H2 FINGER PROTEIN RHC2A, T5I7.2, T5I7_2  gene RHC2A  function Encodes a putative RING-H2 finger protein RHC2a.  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product RHC2A; protein binding / zinc ion binding  note RHC2A; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Protein of unknown function DUF1117 (InterPro:IPR010543); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G59550.1); Has 5852 Blast hits to 5837 proteins in 204 species: Archae - 0; Bacteria - 0; Metazoa - 2116; Fungi - 530; Plants - 2323; Viruses - 21; Other Eukaryotes - 862 (source: NCBI BLink).  protein_id AT2G39720.1p  transcript_id AT2G39720.1  protein_id AT2G39720.1p  transcript_id AT2G39720.1  
At2g39725	chr2:016570070	0.0	W/16570070-16570342	AT2G39725.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_function catalytic activity|GO:0003824||ISS  product complex 1 family protein / LVR family protein  note complex 1 family protein / LVR family protein; FUNCTIONS IN: catalytic activity; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 99 Blast hits to 99 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 43; Plants - 23; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G39725.1p  transcript_id AT2G39725.1  protein_id AT2G39725.1p  transcript_id AT2G39725.1  
At2g39725	chr2:016570070	0.0	W/16570070-16570342	AT2G39725.2  CDS  go_component mitochondrion|GO:0005739||IEA  go_function catalytic activity|GO:0003824||ISS  product complex 1 family protein / LVR family protein  note complex 1 family protein / LVR family protein; FUNCTIONS IN: catalytic activity; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 99 Blast hits to 99 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 43; Plants - 23; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G39725.2p  transcript_id AT2G39725.2  protein_id AT2G39725.2p  transcript_id AT2G39725.2  
At2g39730	chr2:016573301	0.0	C/16573301-16573345,16572500-16572816,16572303-16572408,16572118-16572203,16571554-16572026,16571174-16571472	AT2G39730.3  CDS  gene_syn RCA, RUBISCO ACTIVASE, T5I7.18  gene RCA  function Rubisco activase, a nuclear-encoded chloroplast protein that consists of two isoforms arising from alternative splicing in most plants. Required for the light activation of rubisco.  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleus|GO:0005634|14617066|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_component chloroplast|GO:0009507||NAS  go_component plastoglobule|GO:0010287|16461379|IDA  go_component stromule|GO:0010319|16923014|IDA  go_process response to cold|GO:0009409|16923014|IEP  go_process response to light stimulus|GO:0009416|8819320|IEP  go_function ATP binding|GO:0005524|16822862|IDA  go_function enzyme regulator activity|GO:0030234|10430961|IDA  go_function ADP binding|GO:0043531|16822862|IDA  go_function ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity|GO:0046863|16822862|IDA  product RCA (RUBISCO ACTIVASE); ADP binding / ATP binding / enzyme regulator/ ribulose-1,5-bisphosphate carboxylase/oxygenase activator  note RUBISCO ACTIVASE (RCA); FUNCTIONS IN: ADP binding, enzyme regulator activity, ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity, ATP binding; INVOLVED IN: response to light stimulus, response to cold, defense response to bacterium; LOCATED IN: in 10 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: ribulose bisphosphate carboxylase/oxygenase activase, putative / RuBisCO activase, putative (TAIR:AT1G73110.1); Has 1626 Blast hits to 1595 proteins in 354 species: Archae - 179; Bacteria - 313; Metazoa - 210; Fungi - 261; Plants - 266; Viruses - 0; Other Eukaryotes - 397 (source: NCBI BLink).  protein_id AT2G39730.3p  transcript_id AT2G39730.3  protein_id AT2G39730.3p  transcript_id AT2G39730.3  
At2g39730	chr2:016573301	0.0	C/16573301-16573345,16572500-16572816,16572303-16572408,16572118-16572203,16571554-16572026,16571180-16571472,16571046-16571066	AT2G39730.2  CDS  gene_syn RCA, RUBISCO ACTIVASE, T5I7.18  gene RCA  function Rubisco activase, a nuclear-encoded chloroplast protein that consists of two isoforms arising from alternative splicing in most plants. Required for the light activation of rubisco.  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleus|GO:0005634|14617066|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_component chloroplast|GO:0009507||NAS  go_component plastoglobule|GO:0010287|16461379|IDA  go_component stromule|GO:0010319|16923014|IDA  go_process response to cold|GO:0009409|16923014|IEP  go_process response to light stimulus|GO:0009416|8819320|IEP  go_function ATP binding|GO:0005524|16822862|IDA  go_function enzyme regulator activity|GO:0030234|10430961|IDA  go_function ADP binding|GO:0043531|16822862|IDA  go_function ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity|GO:0046863|16822862|IDA  product RCA (RUBISCO ACTIVASE); ADP binding / ATP binding / enzyme regulator/ ribulose-1,5-bisphosphate carboxylase/oxygenase activator  note RUBISCO ACTIVASE (RCA); FUNCTIONS IN: ADP binding, enzyme regulator activity, ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity, ATP binding; INVOLVED IN: response to light stimulus, response to cold, defense response to bacterium; LOCATED IN: in 10 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: ribulose bisphosphate carboxylase/oxygenase activase, putative / RuBisCO activase, putative (TAIR:AT1G73110.1); Has 1630 Blast hits to 1599 proteins in 355 species: Archae - 179; Bacteria - 315; Metazoa - 210; Fungi - 263; Plants - 266; Viruses - 0; Other Eukaryotes - 397 (source: NCBI BLink).  protein_id AT2G39730.2p  transcript_id AT2G39730.2  protein_id AT2G39730.2p  transcript_id AT2G39730.2  
At2g39730	chr2:016573301	0.0	C/16573301-16573345,16572500-16572816,16572303-16572408,16572118-16572203,16571554-16572026,16571191-16571472,16570951-16571066	AT2G39730.1  CDS  gene_syn RCA, RUBISCO ACTIVASE, T5I7.18  gene RCA  function Rubisco activase, a nuclear-encoded chloroplast protein that consists of two isoforms arising from alternative splicing in most plants. Required for the light activation of rubisco.  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleus|GO:0005634|14617066|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_component chloroplast|GO:0009507||NAS  go_component plastoglobule|GO:0010287|16461379|IDA  go_component stromule|GO:0010319|16923014|IDA  go_process response to cold|GO:0009409|16923014|IEP  go_process response to light stimulus|GO:0009416|8819320|IEP  go_function ATP binding|GO:0005524|16822862|IDA  go_function enzyme regulator activity|GO:0030234|10430961|IDA  go_function ADP binding|GO:0043531|16822862|IDA  go_function ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity|GO:0046863|16822862|IDA  product RCA (RUBISCO ACTIVASE); ADP binding / ATP binding / enzyme regulator/ ribulose-1,5-bisphosphate carboxylase/oxygenase activator  note RUBISCO ACTIVASE (RCA); FUNCTIONS IN: ADP binding, enzyme regulator activity, ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity, ATP binding; INVOLVED IN: response to light stimulus, response to cold, defense response to bacterium; LOCATED IN: in 11 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: ribulose bisphosphate carboxylase/oxygenase activase, putative / RuBisCO activase, putative (TAIR:AT1G73110.1); Has 1686 Blast hits to 1655 proteins in 364 species: Archae - 179; Bacteria - 331; Metazoa - 212; Fungi - 265; Plants - 267; Viruses - 0; Other Eukaryotes - 432 (source: NCBI BLink).  protein_id AT2G39730.1p  transcript_id AT2G39730.1  protein_id AT2G39730.1p  transcript_id AT2G39730.1  
At2g39740	chr2:016576250	0.0	W/16576250-16576388,16576655-16576819,16576963-16577141,16577233-16577328,16577432-16577501,16577598-16577728,16577842-16577952,16578060-16578704	AT2G39740.1  CDS  gene_syn T5I7.4, T5I7_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G45750.1); Has 1306 Blast hits to 1226 proteins in 162 species: Archae - 0; Bacteria - 3; Metazoa - 702; Fungi - 223; Plants - 119; Viruses - 0; Other Eukaryotes - 259 (source: NCBI BLink).  protein_id AT2G39740.1p  transcript_id AT2G39740.1  protein_id AT2G39740.1p  transcript_id AT2G39740.1  
At2g39750	chr2:016581556	0.0	C/16581556-16582281,16581314-16581463,16580948-16581218,16580679-16580789,16580301-16580460,16579795-16580052,16579591-16579713,16579306-16579383,16578986-16579193	AT2G39750.1  CDS  gene_syn T5I7.5, T5I7_5  go_process biological_process|GO:0008150||ND  product dehydration-responsive family protein  note dehydration-responsive family protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive protein-related (TAIR:AT5G06050.1); Has 1179 Blast hits to 1086 proteins in 154 species: Archae - 2; Bacteria - 119; Metazoa - 231; Fungi - 82; Plants - 566; Viruses - 29; Other Eukaryotes - 150 (source: NCBI BLink).  protein_id AT2G39750.1p  transcript_id AT2G39750.1  protein_id AT2G39750.1p  transcript_id AT2G39750.1  
At2g39760	chr2:016583213	0.0	W/16583213-16583601,16584087-16584435,16584522-16584798,16585772-16585983	AT2G39760.1  CDS  gene_syn ATBPM3, BPM3, T5I7.6, T5I7_6  gene BPM3  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515|15659098|IPI  go_function protein binding|GO:0005515||ISS  product BPM3; protein binding  note BPM3; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: ATBPM1 (BTB-POZ and MATH domain 1); protein binding (TAIR:AT5G19000.1); Has 5596 Blast hits to 5441 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 4431; Fungi - 78; Plants - 862; Viruses - 29; Other Eukaryotes - 196 (source: NCBI BLink).  protein_id AT2G39760.1p  transcript_id AT2G39760.1  protein_id AT2G39760.1p  transcript_id AT2G39760.1  
At2g39760	chr2:016583213	0.0	W/16583213-16583601,16584087-16584435,16584522-16584815	AT2G39760.2  CDS  gene_syn ATBPM3, BPM3, T5I7.6, T5I7_6  gene BPM3  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515|15659098|IPI  go_function protein binding|GO:0005515||ISS  product BPM3; protein binding  note BPM3; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: ATBPM1 (BTB-POZ and MATH domain 1); protein binding (TAIR:AT5G19000.1); Has 5341 Blast hits to 5229 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 4220; Fungi - 70; Plants - 837; Viruses - 29; Other Eukaryotes - 185 (source: NCBI BLink).  protein_id AT2G39760.2p  transcript_id AT2G39760.2  protein_id AT2G39760.2p  transcript_id AT2G39760.2  
At2g39770	chr2:016589401	0.0	W/16589401-16589511,16589593-16589655,16589744-16589983,16590070-16590741	AT2G39770.1  CDS  gene_syn CYT1, CYTOKINESIS DEFECTIVE 1, EMB101, EMBRYO DEFECTIVE 101, GDP-MANNOSE PYROPHOSPHORYLASE 1, GMP1, SENSITIVE TO OZONE 1, SOZ1, T5I7.7, T5I7_7, VITAMIN C DEFECTIVE 1, VTC1  gene CYT1  function Encodes a GDP-mannose pyrophosphorylase/ mannose-1-pyrophosphatase. This enzyme provides GDP-mannose, which is used for cell wall carbohydrate biosynthesis and protein glycosylation as well as for ascorbate (vitamin C) biosynthesis. Mutations in this gene confer hypersensitivity to NH4+.  go_process biosynthetic process|GO:0009058||ISS  go_process response to heat|GO:0009408|15923322|IMP  go_process response to salt stress|GO:0009651|16263910|IMP  go_process response to jasmonic acid stimulus|GO:0009753|16262714|IEP  go_process response to ozone|GO:0010193|16262714|IEP  go_process L-ascorbic acid biosynthetic process|GO:0019853|10097187|IMP  go_process cellulose biosynthetic process|GO:0030244|11226227|IMP  go_process defense response to bacterium|GO:0042742|16244149|IMP  go_process response to ammonium ion|GO:0060359|19011088|IMP  go_function mannose-1-phosphate guanylyltransferase activity|GO:0004475|10097187|IMP  go_function mannose-1-phosphate guanylyltransferase activity|GO:0004475|11226227|ISS  go_function nucleotidyltransferase activity|GO:0016779||ISS  product CYT1 (CYTOKINESIS DEFECTIVE 1); mannose-1-phosphate guanylyltransferase/ nucleotidyltransferase  note CYTOKINESIS DEFECTIVE 1 (CYT1); FUNCTIONS IN: mannose-1-phosphate guanylyltransferase activity, nucleotidyltransferase activity; INVOLVED IN: in 9 processes; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), Bacterial transferase hexapeptide repeat (InterPro:IPR001451), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: GDP-mannose pyrophosphorylase, putative (TAIR:AT3G55590.1); Has 19004 Blast hits to 18995 proteins in 1740 species: Archae - 611; Bacteria - 11118; Metazoa - 375; Fungi - 254; Plants - 291; Viruses - 0; Other Eukaryotes - 6355 (source: NCBI BLink).  protein_id AT2G39770.1p  transcript_id AT2G39770.1  protein_id AT2G39770.1p  transcript_id AT2G39770.1  
At2g39780	chr2:016591256	0.0	W/16591256-16591437,16591656-16591684,16591802-16591875,16591997-16592098,16592241-16592244,16592476-16592567,16592832-16592993,16593263-16593347,16593466-16593515	AT2G39780.1  CDS  gene_syn RIBONUCLEASE 2, RNS2, T5I7.8, T5I7_8  gene RNS2  function S-like ribonuclease  go_component vacuole|GO:0005773|15539469|IDA  go_function RNA binding|GO:0003723||IEA  go_function ribonuclease T2 activity|GO:0033897||IEA  go_component intracellular|GO:0005622|9880376|IDA  go_process aging|GO:0007568|8506358|TAS  go_function endoribonuclease activity|GO:0004521||ISS  product RNS2 (RIBONUCLEASE 2); RNA binding / endoribonuclease/ ribonuclease T2  note RIBONUCLEASE 2 (RNS2); FUNCTIONS IN: ribonuclease T2 activity, endoribonuclease activity, RNA binding; INVOLVED IN: aging; LOCATED IN: intracellular, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease T2 (InterPro:IPR001568), Ribonuclease T2, active site (InterPro:IPR018188); BEST Arabidopsis thaliana protein match is: ribonuclease T2 family protein (TAIR:AT1G14220.1); Has 1785 Blast hits to 1784 proteins in 355 species: Archae - 0; Bacteria - 251; Metazoa - 146; Fungi - 173; Plants - 1120; Viruses - 5; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT2G39780.1p  transcript_id AT2G39780.1  protein_id AT2G39780.1p  transcript_id AT2G39780.1  
At2g39780	chr2:016591256	0.0	W/16591256-16591437,16591656-16591684,16591802-16591875,16591997-16592098,16592832-16592993,16593263-16593347,16593466-16593515	AT2G39780.2  CDS  gene_syn RIBONUCLEASE 2, RNS2, T5I7.8, T5I7_8  gene RNS2  function S-like ribonuclease  go_function RNA binding|GO:0003723||IEA  go_function ribonuclease T2 activity|GO:0033897||IEA  go_component intracellular|GO:0005622|9880376|IDA  go_process aging|GO:0007568|8506358|TAS  go_function endoribonuclease activity|GO:0004521||ISS  product RNS2 (RIBONUCLEASE 2); RNA binding / endoribonuclease/ ribonuclease T2  note RIBONUCLEASE 2 (RNS2); FUNCTIONS IN: ribonuclease T2 activity, endoribonuclease activity, RNA binding; INVOLVED IN: aging; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease T2 (InterPro:IPR001568), Ribonuclease T2, active site (InterPro:IPR018188); BEST Arabidopsis thaliana protein match is: ribonuclease T2 family protein (TAIR:AT1G14220.1); Has 1050 Blast hits to 1049 proteins in 235 species: Archae - 0; Bacteria - 177; Metazoa - 129; Fungi - 9; Plants - 676; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT2G39780.2p  transcript_id AT2G39780.2  protein_id AT2G39780.2p  transcript_id AT2G39780.2  
At2g39782	chr2:016594037	0.0	C/16594037-16594516	AT2G39782.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39010.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G39782.1p  transcript_id AT2G39782.1  protein_id AT2G39782.1p  transcript_id AT2G39782.1  
At2g39790	chr2:016594833	0.0	W/16594833-16595078,16595234-16595553,16595644-16595800	AT2G39790.1  CDS  gene_syn T5I7.9, T5I7_9  go_component mitochondrial matrix|GO:0005759||IEA  go_component chloroplast|GO:0009507||IEA  go_component mitochondrial matrix|GO:0005759||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial glycoprotein family protein / MAM33 family protein  note mitochondrial glycoprotein family protein / MAM33 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, mitochondrial matrix; CONTAINS InterPro DOMAIN/s: Mitochondrial glycoprotein (InterPro:IPR003428); BEST Arabidopsis thaliana protein match is: mitochondrial glycoprotein family protein / MAM33 family protein (TAIR:AT2G39795.1); Has 164 Blast hits to 164 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 46; Plants - 95; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT2G39790.1p  transcript_id AT2G39790.1  protein_id AT2G39790.1p  transcript_id AT2G39790.1  
At2g39795	chr2:016597026	0.0	W/16597026-16597277,16597425-16597765,16597869-16598028	AT2G39795.1  CDS  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial matrix|GO:0005759||ISS  product mitochondrial glycoprotein family protein / MAM33 family protein  note mitochondrial glycoprotein family protein / MAM33 family protein; LOCATED IN: mitochondrion, mitochondrial matrix; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial glycoprotein (InterPro:IPR003428); BEST Arabidopsis thaliana protein match is: mitochondrial glycoprotein family protein / MAM33 family protein (TAIR:AT3G55605.1); Has 256 Blast hits to 256 proteins in 93 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 81; Plants - 117; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT2G39795.1p  transcript_id AT2G39795.1  protein_id AT2G39795.1p  transcript_id AT2G39795.1  
At2g39800	chr2:016601947	0.0	C/16601947-16601976,16601705-16601866,16601323-16601600,16601075-16601225,16600809-16600973,16600619-16600696,16600396-16600485,16600230-16600316,16600061-16600147,16599876-16599972,16599687-16599790,16599515-16599590,16599183-16599333,16599016-16599084,16598864-16598930,16598701-16598771,16598516-16598597	AT2G39800.2  CDS  gene_syn ATP5CS, DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1, P5CS1, T5I7.10, T5I7_10  gene P5CS1  function encodes a delta1-pyrroline-5-carboxylate synthase that catalyzes the rate-limiting enzyme in the biosynthesis of proline. Gene is expressed in reproductive organs and tissues under non-stress conditions but in the whole plant under water-limiting condition. Expression is also induced by abscisic acid and salt stress in a light-dependent manner. P5CS1 appears to be involved in salt stress responses related to proline accumulation, including protection from reactive oxidative species. P5CS1 appears to be present in different cells and/or different subcellular locations from P5CS2 in a tissue-dependent manner.  go_component membrane|GO:0016020|17432890|IDA  go_component cytoplasm|GO:0005737|17971042|IDA  go_component chloroplast|GO:0009507|17971042|IDA  go_process proline biosynthetic process|GO:0006561|10441499|TAS  go_process proline biosynthetic process|GO:0006561|17971042|IMP  go_process proline biosynthetic process|GO:0006561|7773306|TAS  go_process response to oxidative stress|GO:0006979|17971042|IMP  go_process response to desiccation|GO:0009269|7773306|IEP  go_process response to water deprivation|GO:0009414|10441499|IEP  go_process response to water deprivation|GO:0009414|18552355|IEP  go_process response to salt stress|GO:0009651|7773306|IEP  go_process response to abscisic acid stimulus|GO:0009737|7773306|IEP  go_process abscisic acid mediated signaling|GO:0009738|10441499|IEP  go_process hyperosmotic salinity response|GO:0042538|17971042|IMP  go_process hyperosmotic salinity response|GO:0042538|7773306|IEP  go_process root development|GO:0048364|17971042|IMP  go_function delta1-pyrroline-5-carboxylate synthetase activity|GO:0017084|10441499|ISS  product P5CS1 (DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1); delta1-pyrroline-5-carboxylate synthetase  note DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1 (P5CS1); FUNCTIONS IN: delta1-pyrroline-5-carboxylate synthetase activity; INVOLVED IN: in 9 processes; LOCATED IN: chloroplast, membrane, cytoplasm; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: C globular stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Glutamate 5-kinase (InterPro:IPR001057), Aspartate/glutamate/uridylate kinase (InterPro:IPR001048), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, C-terminal (InterPro:IPR016163), Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Gamma-glutamyl phosphate reductase GPR (InterPro:IPR000965), delta l-pyrroline-5-carboxylate synthetase (InterPro:IPR005766); BEST Arabidopsis thaliana protein match is: P5CS2 (DELTA 1-PYRROLINE-5-CARBOXYLATE SYNTHASE 2); catalytic/ glutamate 5-kinase/ glutamate-5-semialdehyde dehydrogenase/ oxidoreductase (TAIR:AT3G55610.1); Has 10227 Blast hits to 10219 proteins in 1365 species: Archae - 113; Bacteria - 5157; Metazoa - 151; Fungi - 175; Plants - 117; Viruses - 0; Other Eukaryotes - 4514 (source: NCBI BLink).  protein_id AT2G39800.2p  transcript_id AT2G39800.2  protein_id AT2G39800.2p  transcript_id AT2G39800.2  
At2g39800	chr2:016602880	0.0	C/16602880-16602939,16602520-16602591,16602269-16602372,16601947-16602049,16601705-16601866,16601323-16601600,16601075-16601225,16600809-16600973,16600619-16600696,16600396-16600485,16600230-16600316,16600061-16600147,16599876-16599972,16599687-16599790,16599515-16599590,16599183-16599333,16599016-16599084,16598864-16598930,16598701-16598771,16598516-16598597	AT2G39800.1  CDS  gene_syn ATP5CS, DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1, P5CS1, T5I7.10, T5I7_10  gene P5CS1  function encodes a delta1-pyrroline-5-carboxylate synthase that catalyzes the rate-limiting enzyme in the biosynthesis of proline. Gene is expressed in reproductive organs and tissues under non-stress conditions but in the whole plant under water-limiting condition. Expression is also induced by abscisic acid and salt stress in a light-dependent manner. P5CS1 appears to be involved in salt stress responses related to proline accumulation, including protection from reactive oxidative species. P5CS1 appears to be present in different cells and/or different subcellular locations from P5CS2 in a tissue-dependent manner.  go_component membrane|GO:0016020|17432890|IDA  go_component cytoplasm|GO:0005737|17971042|IDA  go_component chloroplast|GO:0009507|17971042|IDA  go_process proline biosynthetic process|GO:0006561|10441499|TAS  go_process proline biosynthetic process|GO:0006561|17971042|IMP  go_process proline biosynthetic process|GO:0006561|7773306|TAS  go_process response to oxidative stress|GO:0006979|17971042|IMP  go_process response to desiccation|GO:0009269|7773306|IEP  go_process response to water deprivation|GO:0009414|10441499|IEP  go_process response to water deprivation|GO:0009414|18552355|IEP  go_process response to salt stress|GO:0009651|7773306|IEP  go_process response to abscisic acid stimulus|GO:0009737|7773306|IEP  go_process abscisic acid mediated signaling|GO:0009738|10441499|IEP  go_process hyperosmotic salinity response|GO:0042538|17971042|IMP  go_process hyperosmotic salinity response|GO:0042538|7773306|IEP  go_process root development|GO:0048364|17971042|IMP  go_function delta1-pyrroline-5-carboxylate synthetase activity|GO:0017084|10441499|ISS  product P5CS1 (DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1); delta1-pyrroline-5-carboxylate synthetase  note DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1 (P5CS1); FUNCTIONS IN: delta1-pyrroline-5-carboxylate synthetase activity; INVOLVED IN: in 9 processes; LOCATED IN: chloroplast, membrane, cytoplasm; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: C globular stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Glutamate 5-kinase (InterPro:IPR001057), Aspartate/glutamate/uridylate kinase (InterPro:IPR001048), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, C-terminal (InterPro:IPR016163), delta l-pyrroline-5-carboxylate synthetase (InterPro:IPR005766), Gamma-glutamyl phosphate reductase GPR (InterPro:IPR000965), Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Glutamate 5-kinase, ProB-related (InterPro:IPR005715); BEST Arabidopsis thaliana protein match is: P5CS2 (DELTA 1-PYRROLINE-5-CARBOXYLATE SYNTHASE 2); catalytic/ glutamate 5-kinase/ glutamate-5-semialdehyde dehydrogenase/ oxidoreductase (TAIR:AT3G55610.1); Has 10606 Blast hits to 10598 proteins in 1368 species: Archae - 116; Bacteria - 5183; Metazoa - 151; Fungi - 175; Plants - 117; Viruses - 0; Other Eukaryotes - 4864 (source: NCBI BLink).  protein_id AT2G39800.1p  transcript_id AT2G39800.1  protein_id AT2G39800.1p  transcript_id AT2G39800.1  
At2g39805	chr2:016612300	0.0	C/16612300-16612353,16611769-16611826,16611589-16611669,16611233-16611398,16610629-16610902,16610216-16610410	AT2G39805.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane Yip1 family protein  note integral membrane Yip1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Yip1 domain (InterPro:IPR006977); BEST Arabidopsis thaliana protein match is: integral membrane Yip1 family protein (TAIR:AT5G27490.1); Has 323 Blast hits to 322 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 61; Plants - 49; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT2G39805.1p  transcript_id AT2G39805.1  protein_id AT2G39805.1p  transcript_id AT2G39805.1  
At2g39805	chr2:016612300	0.0	C/16612300-16612353,16611769-16611826,16611589-16611669,16611233-16611401,16610629-16610902,16610216-16610410	AT2G39805.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane Yip1 family protein  note integral membrane Yip1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Yip1 domain (InterPro:IPR006977); BEST Arabidopsis thaliana protein match is: integral membrane Yip1 family protein (TAIR:AT5G27490.1); Has 320 Blast hits to 319 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 150; Fungi - 61; Plants - 49; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT2G39805.2p  transcript_id AT2G39805.2  protein_id AT2G39805.2p  transcript_id AT2G39805.2  
At2g39810	chr2:016612941	0.0	W/16612941-16613030,16613167-16613557,16613843-16613977,16614068-16614243,16614732-16615133,16615252-16615410,16615515-16616006,16616425-16616562,16616777-16617414,16617640-16617802	AT2G39810.1  CDS  gene_syn HOS1, T5I7.11, T5I7_11  gene HOS1  function A novel protein with a RING finger motif near the amino terminus. Negative regulator of cold responses. Functions as an E3 ligase required for the ubiquitination of ICE1. HOS1 physically interacts with ICE1 and mediates the ubiquitination of ICE1 both in vitro and in vivo. Overexpression represses the expression of CBFs and their downstream genes and confers increased sensitivity to freezing stress.  go_component nucleus|GO:0005634|11297514|IDA  go_component cytoplasm|GO:0005737|11297514|IDA  go_process response to cold|GO:0009409|12171651|IMP  go_process response to cold|GO:0009409|16702557|IMP  go_process negative regulation of transcription|GO:0016481|11297514|IEP  go_process protein ubiquitination|GO:0016567|16702557|IDA  go_process protein ubiquitination|GO:0016567|16702557|IMP  go_function ubiquitin-protein ligase activity|GO:0004842|16702557|IDA  product HOS1; ubiquitin-protein ligase  note HOS1; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: response to cold, negative regulation of transcription, protein ubiquitination; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); Has 179 Blast hits to 179 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 0; Plants - 32; Viruses - 5; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT2G39810.1p  transcript_id AT2G39810.1  protein_id AT2G39810.1p  transcript_id AT2G39810.1  
At2g39820	chr2:016618459	0.0	W/16618459-16618468,16618564-16618666,16618773-16618903,16618989-16619230,16619335-16619592	AT2G39820.1  CDS  gene_syn T5I7.12, T5I7_12  go_process mature ribosome assembly|GO:0042256||IEA  go_function ribosome binding|GO:0043022||IEA  go_component cellular_component|GO:0005575||ND  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product eukaryotic translation initiation factor 6, putative / eIF-6, putative  note eukaryotic translation initiation factor 6, putative / eIF-6, putative; FUNCTIONS IN: ribosome binding, translation initiation factor activity; INVOLVED IN: translational initiation, mature ribosome assembly; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF6 (InterPro:IPR002769); BEST Arabidopsis thaliana protein match is: emb1624 (embryo defective 1624); ribosome binding / translation initiation factor (TAIR:AT3G55620.1); Has 594 Blast hits to 589 proteins in 239 species: Archae - 166; Bacteria - 0; Metazoa - 144; Fungi - 92; Plants - 45; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink).  protein_id AT2G39820.1p  transcript_id AT2G39820.1  protein_id AT2G39820.1p  transcript_id AT2G39820.1  
At2g39830	chr2:016623568	0.0	C/16623568-16623658,16623307-16623488,16622430-16622517,16622193-16622310,16621783-16621903,16621584-16621667,16621380-16621499,16621066-16621278,16620909-16620971,16620704-16620819,16620565-16620623,16619950-16620281	AT2G39830.1  CDS  gene_syn DA1-RELATED PROTEIN 2, DAR2, T5I7.13, T5I7_13  gene DAR2  go_component chloroplast|GO:0009507||IEA  go_function zinc ion binding|GO:0008270||IEA  product DAR2 (DA1-RELATED PROTEIN 2); zinc ion binding  note DA1-RELATED PROTEIN 2 (DAR2); FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT4G36860.1); Has 1260 Blast hits to 1022 proteins in 84 species: Archae - 0; Bacteria - 8; Metazoa - 1006; Fungi - 20; Plants - 88; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).  protein_id AT2G39830.1p  transcript_id AT2G39830.1  protein_id AT2G39830.1p  transcript_id AT2G39830.1  
At2g39840	chr2:016627430	0.0	W/16627430-16627646,16627963-16628522,16628601-16628789	AT2G39840.1  CDS  gene_syn TOPP4  gene TOPP4  function Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers.  go_component protein phosphatase type 1 complex|GO:0000164|7678768|ISS  go_process protein amino acid dephosphorylation|GO:0006470|7678768|TAS  go_function protein serine/threonine phosphatase activity|GO:0004722|7678768|ISS  product TOPP4; protein serine/threonine phosphatase  note TOPP4; FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein phosphatase type 1 complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: TOPP2; protein serine/threonine phosphatase (TAIR:AT5G59160.3); Has 5540 Blast hits to 5403 proteins in 446 species: Archae - 49; Bacteria - 346; Metazoa - 2061; Fungi - 929; Plants - 613; Viruses - 16; Other Eukaryotes - 1526 (source: NCBI BLink).  protein_id AT2G39840.1p  transcript_id AT2G39840.1  protein_id AT2G39840.1p  transcript_id AT2G39840.1  
At2g39850	chr2:016630626	0.0	W/16630626-16630709,16630824-16630915,16631019-16631110,16631299-16631530,16631667-16632219,16632309-16632412,16632646-16632891,16633002-16633128,16633219-16633435,16633520-16634100	AT2G39850.1  CDS  gene_syn T5I7.15, T5I7_15  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product identical protein binding / serine-type endopeptidase  note identical protein binding / serine-type endopeptidase; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: plant-type cell wall; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT5G59190.1); Has 2372 Blast hits to 2135 proteins in 391 species: Archae - 47; Bacteria - 1112; Metazoa - 44; Fungi - 67; Plants - 940; Viruses - 0; Other Eukaryotes - 162 (source: NCBI BLink).  protein_id AT2G39850.1p  transcript_id AT2G39850.1  protein_id AT2G39850.1p  transcript_id AT2G39850.1  
At2g39851	chr2:016634600	0.0	W/16634600-16634698,16634785-16634870,16634984-16635075,16635348-16635430	AT2G39851.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  product identical protein binding / serine-type endopeptidase  note identical protein binding / serine-type endopeptidase; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: negative regulation of catalytic activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259), Peptidase S8, subtilisin-related (InterPro:IPR015500); Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G39851.1p  transcript_id AT2G39851.1  protein_id AT2G39851.1p  transcript_id AT2G39851.1  
At2g39855	chr2:016637845	0.0	W/16637845-16637985,16638075-16638144,16638302-16638441,16638673-16638733,16638836-16638852	AT2G39855.2  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55646.1); Has 51 Blast hits to 50 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 1; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G39855.2p  transcript_id AT2G39855.2  protein_id AT2G39855.2p  transcript_id AT2G39855.2  
At2g39855	chr2:016637845	0.0	W/16637845-16637985,16638075-16638144,16638302-16638546	AT2G39855.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55646.1); Has 24 Blast hits to 24 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G39855.1p  transcript_id AT2G39855.1  protein_id AT2G39855.1p  transcript_id AT2G39855.1  
At2g39860	chr2:016639780	0.0	C/16639780-16639851	AT2G39860.1  tRNA  gene_syn 1954.TRNA-ASP-1, 9934.TRNA-ASP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asp (anticodon: GTC)  transcript_id AT2G39860.1  
At2g39865	chr2:016641761	0.0	C/16641761-16641907	AT2G39865.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G39865.1p  transcript_id AT2G39865.1  protein_id AT2G39865.1p  transcript_id AT2G39865.1  
At2g39870	chr2:016643697	0.0	W/16643697-16643969,16644054-16644579,16644669-16644770,16644859-16644950	AT2G39870.1  CDS  gene_syn T28M21.3, T28M21_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55690.1); Has 42 Blast hits to 42 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G39870.1p  transcript_id AT2G39870.1  protein_id AT2G39870.1p  transcript_id AT2G39870.1  
At2g39880	chr2:016649161	0.0	C/16649161-16649479,16647945-16648729	AT2G39880.1  CDS  gene_syn AtMYB25, MYB25, T28M21.4, T28M21_4, myb domain protein 25  gene MYB25  function Encodes a putative transcription factor (MYB25).  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product MYB25 (myb domain protein 25); DNA binding / transcription factor  note myb domain protein 25 (MYB25); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB109 (myb domain protein 109); DNA binding / transcription factor (TAIR:AT3G55730.1); Has 6316 Blast hits to 5660 proteins in 356 species: Archae - 0; Bacteria - 0; Metazoa - 711; Fungi - 323; Plants - 3590; Viruses - 6; Other Eukaryotes - 1686 (source: NCBI BLink).  protein_id AT2G39880.1p  transcript_id AT2G39880.1  protein_id AT2G39880.1p  transcript_id AT2G39880.1  
At2g39885	chr2:016652101	0.0	W/16652101-16652233	AT2G39885.1  miRNA  gene_syn AT-MIR393A, MICRORNA393A, MIR393A  gene MIR393A  function Encodes a microRNA that targets several TIR1/AFB family members and one bHLH family member. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCCAAAGGGAUCGCAUUGAUCC. Targets are F-box proteins and bHLH transcription factor.  go_process response to molecule of bacterial origin|GO:0002237|16627744|IEP  go_process auxin mediated signaling pathway|GO:0009734|16627744|NAS  go_process gene silencing by miRNA, mRNA cleavage|GO:0035279|15608278|IEP  product MIR393A (MICRORNA393A); miRNA  transcript_id AT2G39885.1  
At2g39890	chr2:016656022	0.0	W/16656022-16656121,16656493-16656717,16656796-16656890,16656972-16657161,16657256-16657380,16657525-16657740,16657825-16658202	AT2G39890.1  CDS  gene_syn ATPROT1, PROLINE TRANSPORTER 1, PROT1, T28M21.5, T28M21_5  gene PROT1  function Encodes a proline transporter with affinity for gly betaine, proline and GABA. Protein is expressed in the vascular tissue, specifically the phloem.  go_component plasma membrane|GO:0005886|15618414|IDA  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_process proline transport|GO:0015824|8776904|IGI  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  go_function L-proline transmembrane transporter activity|GO:0015193|8776904|IGI  product PROT1 (PROLINE TRANSPORTER 1); L-proline transmembrane transporter/ amino acid transmembrane transporter  note PROLINE TRANSPORTER 1 (PROT1); FUNCTIONS IN: amino acid transmembrane transporter activity, L-proline transmembrane transporter activity; INVOLVED IN: proline transport, amino acid transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: ProT3 (PROLINE TRANSPORTER 3); L-proline transmembrane transporter/ amino acid transmembrane transporter (TAIR:AT2G36590.1); Has 878 Blast hits to 877 proteins in 117 species: Archae - 0; Bacteria - 1; Metazoa - 91; Fungi - 82; Plants - 685; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT2G39890.1p  transcript_id AT2G39890.1  protein_id AT2G39890.1p  transcript_id AT2G39890.1  
At2g39890	chr2:016656022	0.0	W/16656022-16656121,16656493-16656717,16656796-16656890,16656972-16657161,16657256-16657380,16657525-16657740,16657825-16658202	AT2G39890.2  CDS  gene_syn ATPROT1, PROLINE TRANSPORTER 1, PROT1, T28M21.5, T28M21_5  gene PROT1  function Encodes a proline transporter with affinity for gly betaine, proline and GABA. Protein is expressed in the vascular tissue, specifically the phloem.  go_component plasma membrane|GO:0005886|15618414|IDA  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_process proline transport|GO:0015824|8776904|IGI  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  go_function L-proline transmembrane transporter activity|GO:0015193|8776904|IGI  product PROT1 (PROLINE TRANSPORTER 1); L-proline transmembrane transporter/ amino acid transmembrane transporter  note PROLINE TRANSPORTER 1 (PROT1); FUNCTIONS IN: amino acid transmembrane transporter activity, L-proline transmembrane transporter activity; INVOLVED IN: proline transport, amino acid transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: ProT3 (PROLINE TRANSPORTER 3); L-proline transmembrane transporter/ amino acid transmembrane transporter (TAIR:AT2G36590.1); Has 878 Blast hits to 877 proteins in 117 species: Archae - 0; Bacteria - 1; Metazoa - 91; Fungi - 82; Plants - 685; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT2G39890.2p  transcript_id AT2G39890.2  protein_id AT2G39890.2p  transcript_id AT2G39890.2  
At2g39900	chr2:016659136	0.0	W/16659136-16659270,16659415-16659514,16659606-16659643,16659728-16659817,16660028-16660267	AT2G39900.1  CDS  gene_syn T28M21.6, T28M21_6  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product LIM domain-containing protein  note LIM domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: LIM domain-containing protein (TAIR:AT3G55770.5); Has 3629 Blast hits to 2498 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 2988; Fungi - 46; Plants - 313; Viruses - 0; Other Eukaryotes - 282 (source: NCBI BLink).  protein_id AT2G39900.1p  transcript_id AT2G39900.1  protein_id AT2G39900.1p  transcript_id AT2G39900.1  
At2g39910	chr2:016660604	0.0	W/16660604-16660680,16660773-16661268,16661359-16661445,16661642-16661832,16662113-16662308,16662421-16662485,16662596-16662697,16662790-16662886	AT2G39910.1  CDS  gene_syn T28M21.7, T28M21_7  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 60 Blast hits to 60 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 41; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G39910.1p  transcript_id AT2G39910.1  protein_id AT2G39910.1p  transcript_id AT2G39910.1  
At2g39920	chr2:016664242	0.0	C/16664242-16664305,16663727-16664141,16663448-16663651,16663201-16663369	AT2G39920.1  CDS  gene_syn T28M21.8, T28M21_8  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function acid phosphatase activity|GO:0003993||IEA  go_component cellular_component|GO:0005575||ND  go_function acid phosphatase activity|GO:0003993||ISS  product acid phosphatase class B family protein  note acid phosphatase class B family protein; FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519); BEST Arabidopsis thaliana protein match is: acid phosphatase class B family protein (TAIR:AT5G44020.1); Has 240 Blast hits to 240 proteins in 30 species: Archae - 0; Bacteria - 22; Metazoa - 0; Fungi - 0; Plants - 217; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G39920.1p  transcript_id AT2G39920.1  protein_id AT2G39920.1p  transcript_id AT2G39920.1  
At2g39930	chr2:016666078	0.0	W/16666078-16666407,16666497-16666679,16666761-16666853,16666949-16667101,16667580-16667671,16668017-16668158,16668234-16668341,16668758-16668843,16669203-16669274,16669357-16669483,16669838-16669924,16670328-16670420,16670557-16670712,16670867-16670950,16671291-16671371,16671458-16671540,16671723-16671840,16671920-16672183	AT2G39930.1  CDS  gene_syn ARABIDOPSIS THALIANA ISOAMYLASE 1, ATISA1, ISA1, ISOAMYLASE 1, T28M21.9, T28M21_9  gene ISA1  function Encodes an isoamylase-type debranching enzyme. Mutations in this gene cause the loss of detectable isoamylase activity and the disruption of normal starch structure. Mutants have reduced starch content and abnormally structured amylopectins and phytoglycogens. It has been postulated that AtISA1 interacts with AtISA2 to form the Iso1 complex.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast isoamylase complex|GO:0010368|15743447|IDA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_process amylopectin biosynthetic process|GO:0010021|15743447|IMP  go_process amylopectin biosynthetic process|GO:0010021|18815382|IMP  go_function alpha-amylase activity|GO:0004556||ISS  go_function isoamylase activity|GO:0019156|15743447|IMP  go_function isoamylase activity|GO:0019156|18815382|IDA  product ISA1 (ISOAMYLASE 1); alpha-amylase/ isoamylase  note ISOAMYLASE 1 (ISA1); FUNCTIONS IN: isoamylase activity, alpha-amylase activity; INVOLVED IN: amylopectin biosynthetic process, carbohydrate metabolic process; LOCATED IN: chloroplast, chloroplast isoamylase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin-like fold (InterPro:IPR013783), Glycoside hydrolase, family 13, N-terminal (InterPro:IPR004193), Immunoglobulin E-set (InterPro:IPR014756), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycosyl hydrolase, family 13, catalytic region (InterPro:IPR006047), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: ISA3 (ISOAMYLASE 3); alpha-amylase/ isoamylase (TAIR:AT4G09020.1); Has 10390 Blast hits to 10365 proteins in 1372 species: Archae - 96; Bacteria - 8033; Metazoa - 241; Fungi - 300; Plants - 469; Viruses - 0; Other Eukaryotes - 1251 (source: NCBI BLink).  protein_id AT2G39930.1p  transcript_id AT2G39930.1  protein_id AT2G39930.1p  transcript_id AT2G39930.1  
At2g39940	chr2:016674996	0.0	C/16674996-16675486,16673830-16674310,16672848-16673654	AT2G39940.1  CDS  gene_syn COI1, CORONATINE INSENSITIVE 1, T28M21.10, T28M21_10  gene COI1  function Encodes a protein containing Leu-rich repeats and a degenerate F-box motif. Associates with AtCUL1, AtRbx1, and the Skp1-like proteins ASK1 and ASK2 to assemble SCF COI1 ubiquitin-ligase complexes in planta. A single amino acid substitution in the F-box motif of COI1 abolishes the formation of the SCF(COI1) complexes and results in loss of the JA response. Required for wound- and jasmonates-induced transcriptional regulation.  go_component SCF ubiquitin ligase complex|GO:0019005|16021335|IPI  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process defense response|GO:0006952|9582125|TAS  go_process response to wounding|GO:0009611|16021335|IMP  go_process response to insect|GO:0009625|15923339|IMP  go_process response to jasmonic acid stimulus|GO:0009753|16021335|IMP  go_process jasmonic acid and ethylene-dependent systemic resistance|GO:0009861|11418339|TAS  go_process jasmonic acid and ethylene-dependent systemic resistance|GO:0009861|9582125|TAS  go_process jasmonic acid mediated signaling pathway|GO:0009867|15860010|IGI  go_process jasmonic acid mediated signaling pathway|GO:0009867|9582125|TAS  go_process stomatal movement|GO:0010118|16959575|IMP  go_process SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|GO:0031146|17637675|IMP  go_process negative regulation of defense response|GO:0031348|16732289|IMP  go_process defense response to bacterium|GO:0042742|16959575|IMP  go_process defense response to fungus|GO:0050832|17513501|IMP  go_function ubiquitin-protein ligase activity|GO:0004842|9582125|ISS  go_function protein binding|GO:0005515|17637677|IPI  product COI1 (CORONATINE INSENSITIVE 1); protein binding / ubiquitin-protein ligase  note CORONATINE INSENSITIVE 1 (COI1); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: in 12 processes; LOCATED IN: SCF ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: TIR1 (TRANSPORT INHIBITOR RESPONSE 1); auxin binding / protein binding / ubiquitin-protein ligase (TAIR:AT3G62980.1); Has 1207 Blast hits to 959 proteins in 95 species: Archae - 0; Bacteria - 2; Metazoa - 408; Fungi - 32; Plants - 718; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT2G39940.1p  transcript_id AT2G39940.1  protein_id AT2G39940.1p  transcript_id AT2G39940.1  
At2g39950	chr2:016679854	0.0	C/16679854-16679961,16679657-16679772,16678035-16678278,16676758-16677957	AT2G39950.2  CDS  gene_syn T28M21.11, T28M21_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 914 Blast hits to 203 proteins in 68 species: Archae - 0; Bacteria - 8; Metazoa - 90; Fungi - 44; Plants - 26; Viruses - 0; Other Eukaryotes - 746 (source: NCBI BLink).  protein_id AT2G39950.2p  transcript_id AT2G39950.2  protein_id AT2G39950.2p  transcript_id AT2G39950.2  
At2g39950	chr2:016679854	0.0	C/16679854-16680204,16679657-16679772,16678035-16678278,16676758-16677957	AT2G39950.1  CDS  gene_syn T28M21.11, T28M21_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 951 Blast hits to 228 proteins in 71 species: Archae - 0; Bacteria - 8; Metazoa - 110; Fungi - 43; Plants - 26; Viruses - 0; Other Eukaryotes - 764 (source: NCBI BLink).  protein_id AT2G39950.1p  transcript_id AT2G39950.1  protein_id AT2G39950.1p  transcript_id AT2G39950.1  
At2g39960	chr2:016683390	0.0	C/16683390-16683491,16683167-16683318,16682826-16682907,16681853-16681995,16681666-16681765	AT2G39960.1  CDS  gene_syn T28M21.12, T28M21_12  go_process signal peptide processing|GO:0006465||IEA  go_function peptidase activity|GO:0008233||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  product microsomal signal peptidase 25 kDa subunit, putative (SPC25)  note microsomal signal peptidase 25 kDa subunit, putative (SPC25); FUNCTIONS IN: peptidase activity; INVOLVED IN: signal peptide processing; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: male gametophyte, callus; CONTAINS InterPro DOMAIN/s: Microsomal signal peptidase 25 kDa subunit (InterPro:IPR009582); BEST Arabidopsis thaliana protein match is: peptidase (TAIR:AT4G04200.1); Has 186 Blast hits to 184 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 117; Fungi - 22; Plants - 41; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT2G39960.1p  transcript_id AT2G39960.1  protein_id AT2G39960.1p  transcript_id AT2G39960.1  
At2g39970	chr2:016686312	0.0	C/16686312-16686392,16686142-16686219,16685883-16685957,16685640-16685770,16685190-16685244,16684906-16685013,16684695-16684763,16684498-16684599,16684282-16684405,16684026-16684198	AT2G39970.1  CDS  gene_syn T28M21.13, T28M21_13  go_component plasma membrane|GO:0005886|17151019|IDA  go_process transport|GO:0006810||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_component peroxisomal membrane|GO:0005778|11522909|IDA  go_process transport|GO:0006810||ISS  go_function binding|GO:0005488||ISS  product peroxisomal membrane protein (PMP36)  note peroxisomal membrane protein (PMP36); FUNCTIONS IN: binding; INVOLVED IN: transport; LOCATED IN: peroxisomal membrane, mitochondrial inner membrane, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: ATFOLT1 (ARABIDOPSIS THALIANA FOLATE TRANSPORTER 1); binding / folic acid transporter (TAIR:AT5G66380.1); Has 12085 Blast hits to 8258 proteins in 311 species: Archae - 0; Bacteria - 0; Metazoa - 6388; Fungi - 3049; Plants - 1606; Viruses - 0; Other Eukaryotes - 1042 (source: NCBI BLink).  protein_id AT2G39970.1p  transcript_id AT2G39970.1  protein_id AT2G39970.1p  transcript_id AT2G39970.1  
At2g39975	chr2:016687871	0.0	W/16687871-16688248	AT2G39975.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40745.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G39975.1p  transcript_id AT2G39975.1  protein_id AT2G39975.1p  transcript_id AT2G39975.1  
At2g39980	chr2:016688437	0.0	C/16688437-16689885	AT2G39980.1  CDS  gene_syn T28M21.14, T28M21_14  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT5G01210.1); Has 1343 Blast hits to 1274 proteins in 116 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 81; Plants - 1260; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G39980.1p  transcript_id AT2G39980.1  protein_id AT2G39980.1p  transcript_id AT2G39980.1  
At2g39990	chr2:016699684	0.0	C/16699684-16699929,16699420-16699499,16699042-16699271,16698693-16698814,16698497-16698610,16698332-16698421	AT2G39990.1  CDS  gene_syn EIF2, T28M21.15, T28M21_15, TRANSLATION INITIATION FACTOR EIF2 P47 SUBUNIT HOMOLOG  gene EIF2  function translation initiation factor eIF2 p47 subunit homolog  go_component nucleus|GO:0005634|14617066|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component eukaryotic translation initiation factor 3 complex|GO:0005852||ISS  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product EIF2; translation initiation factor  note EIF2; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: eukaryotic translation initiation factor 3 complex, nucleus, membrane, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: MEE34 (maternal effect embryo arrest 34) (TAIR:AT3G11270.1); Has 783 Blast hits to 783 proteins in 165 species: Archae - 0; Bacteria - 0; Metazoa - 371; Fungi - 167; Plants - 104; Viruses - 0; Other Eukaryotes - 141 (source: NCBI BLink).  protein_id AT2G39990.1p  transcript_id AT2G39990.1  protein_id AT2G39990.1p  transcript_id AT2G39990.1  
At2g40000	chr2:016700649	0.0	C/16700649-16701956	AT2G40000.1  CDS  gene_syn ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2, ATHSPRO2, HSPRO2, T28M21.16, T28M21_16  gene HSPRO2  go_component cellular_component|GO:0005575||ND  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_process response to salicylic acid stimulus|GO:0009751|17977154|IEP  go_process defense response to bacterium, incompatible interaction|GO:0009816|17977154|IMP  go_function molecular_function|GO:0003674||ND  product HSPRO2 (ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2)  note ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2 (HSPRO2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress, defense response to bacterium, incompatible interaction, response to salicylic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Hs1pro-1, C-terminal (InterPro:IPR009743), Hs1pro-1, N-terminal (InterPro:IPR009869); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55840.1); Has 54 Blast hits to 54 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT2G40000.1p  transcript_id AT2G40000.1  protein_id AT2G40000.1p  transcript_id AT2G40000.1  
At2g40004	chr2:016704844	0.0	W/16704844-16704954	AT2G40004.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G40004.1p  transcript_id AT2G40004.1  protein_id AT2G40004.1p  transcript_id AT2G40004.1  
At2g40008	chr2:016708056	0.0	W/16708056-16709436	AT2G40008.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G40010  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G40008.1  
At2g40010	chr2:016710191	0.0	C/16710191-16710448,16710013-16710081,16708795-16709286,16708578-16708712	AT2G40010.1  CDS  gene_syn T28M21.17, T28M21_17  go_process translational elongation|GO:0006414||IEA  go_process ribosome biogenesis|GO:0042254||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic ribosome|GO:0022626|17934214|IDA  go_process translation|GO:0006412||ISS  go_process translational elongation|GO:0006414||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S acidic ribosomal protein P0 (RPP0A)  note 60S acidic ribosomal protein P0 (RPP0A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, ribosome; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813), Ribosomal protein L10 (InterPro:IPR001790); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P0 (RPP0B) (TAIR:AT3G09200.1); Has 1215 Blast hits to 1213 proteins in 358 species: Archae - 223; Bacteria - 4; Metazoa - 421; Fungi - 185; Plants - 112; Viruses - 0; Other Eukaryotes - 270 (source: NCBI BLink).  protein_id AT2G40010.1p  transcript_id AT2G40010.1  protein_id AT2G40010.1p  transcript_id AT2G40010.1  
At2g40020	chr2:016711420	0.0	W/16711420-16711443,16711802-16711900,16711995-16712192,16712365-16712509,16712597-16712853	AT2G40020.3  CDS  gene_syn T28M21.18, T28M21_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WIYLD domain (InterPro:IPR018848); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G45248.5); Has 5871 Blast hits to 3101 proteins in 244 species: Archae - 15; Bacteria - 225; Metazoa - 2760; Fungi - 445; Plants - 149; Viruses - 184; Other Eukaryotes - 2093 (source: NCBI BLink).  protein_id AT2G40020.3p  transcript_id AT2G40020.3  protein_id AT2G40020.3p  transcript_id AT2G40020.3  
At2g40020	chr2:016711420	0.0	W/16711420-16711443,16711802-16711900,16711995-16712192,16712365-16712592	AT2G40020.2  CDS  gene_syn T28M21.18, T28M21_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WIYLD domain (InterPro:IPR018848); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G45248.5); Has 87 Blast hits to 75 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 42; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT2G40020.2p  transcript_id AT2G40020.2  protein_id AT2G40020.2p  transcript_id AT2G40020.2  
At2g40020	chr2:016711814	0.0	W/16711814-16711900,16711995-16712192,16712365-16712509,16712597-16712853	AT2G40020.1  CDS  gene_syn T28M21.18, T28M21_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WIYLD domain (InterPro:IPR018848); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G45248.5); Has 5859 Blast hits to 3090 proteins in 244 species: Archae - 15; Bacteria - 222; Metazoa - 2729; Fungi - 459; Plants - 148; Viruses - 184; Other Eukaryotes - 2102 (source: NCBI BLink).  protein_id AT2G40020.1p  transcript_id AT2G40020.1  protein_id AT2G40020.1p  transcript_id AT2G40020.1  
At2g40030	chr2:016715089	0.0	W/16715089-16715169,16715426-16715552,16715644-16715759,16715856-16715903,16716237-16716401,16716568-16716726,16716811-16718691,16718780-16718955,16719068-16719143,16719256-16719386,16719580-16719734,16720038-16720312,16720454-16720627,16720721-16720861,16720959-16722526,16722654-16722768,16722864-16723406	AT2G40030.1  CDS  gene_syn ATNRPD1B, DEFECTIVE IN MERISTEM SILENCING 5, DMS5, DRD3, NRPD1B, NRPE1, T28M21.19, T28M21_19  gene NRPD1B  function Encodes the unique largest subunit of nuclear DNA-dependent RNA polymerase V; homologous to budding yeast RPB1 and the E. coli RNA polymerase beta prime subunit. Required for normal RNA-directed DNA methylation at non-CG methylation sites and transgene silencing.  go_component DNA-directed RNA polymerase IV complex|GO:0000418|15766525|IPI  go_component nucleus|GO:0005634|16140984|IDA  go_component nucleus|GO:0005634||ISS  go_component nucleolus|GO:0005730|16839878|IDA  go_component nuclear body|GO:0016604|16839879|IDA  go_component RNA polymerase complex|GO:0030880|16140984|IPI  go_component DNA-directed RNA polymerase V complex|GO:0080137|19110459|IPI  go_process DNA methylation|GO:0006306|15924141|IMP  go_process transcription|GO:0006350||ISS  go_process RNA interference, production of siRNA|GO:0030422|18287047|IMP  go_process posttranscriptional gene silencing by RNA|GO:0035194|16140984|IMP  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899|15924141|ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product NRPD1B; DNA binding / DNA-directed RNA polymerase  note NRPD1B; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: posttranscriptional gene silencing by RNA, RNA interference, production of siRNA, DNA methylation, transcription; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081); BEST Arabidopsis thaliana protein match is: NRPD1A (NUCLEAR RNA POLYMERASE D 1A); DNA binding / DNA-directed RNA polymerase (TAIR:AT1G63020.1); Has 44154 Blast hits to 23996 proteins in 3987 species: Archae - 240; Bacteria - 6699; Metazoa - 12873; Fungi - 6096; Plants - 3903; Viruses - 740; Other Eukaryotes - 13603 (source: NCBI BLink).  protein_id AT2G40030.1p  transcript_id AT2G40030.1  protein_id AT2G40030.1p  transcript_id AT2G40030.1  
At2g40050	chr2:016723919	0.0	C/16723919-16725748	AT2G40050.1  CDS  gene_syn T28M21.21, T28M21_21  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT1G61840.1); Has 1173 Blast hits to 487 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 0; Plants - 1150; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT2G40050.1p  transcript_id AT2G40050.1  protein_id AT2G40050.1p  transcript_id AT2G40050.1  
At2g40060	chr2:016726564	0.0	W/16726564-16726850,16727199-16727352,16727666-16728001	AT2G40060.1  CDS  gene_syn T28M21.22, T28M21_22  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function structural molecule activity|GO:0005198||IEA  go_function protein binding|GO:0005515||IEA  product protein binding / structural molecule  note protein binding / structural molecule; FUNCTIONS IN: protein binding, structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: plasma membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin light chain (InterPro:IPR000996); BEST Arabidopsis thaliana protein match is: protein binding / structural molecule (TAIR:AT3G51890.1); Has 403 Blast hits to 391 proteins in 99 species: Archae - 2; Bacteria - 32; Metazoa - 184; Fungi - 36; Plants - 54; Viruses - 2; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT2G40060.1p  transcript_id AT2G40060.1  protein_id AT2G40060.1p  transcript_id AT2G40060.1  
At2g40070	chr2:016730968	0.0	C/16730968-16731040,16730755-16730869,16730165-16730279,16728721-16729857,16728378-16728641	AT2G40070.2  CDS  gene_syn T28M21.23, T28M21_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Has 92805 Blast hits to 48882 proteins in 1559 species: Archae - 225; Bacteria - 11081; Metazoa - 37135; Fungi - 20962; Plants - 3300; Viruses - 2664; Other Eukaryotes - 17438 (source: NCBI BLink).  protein_id AT2G40070.2p  transcript_id AT2G40070.2  protein_id AT2G40070.2p  transcript_id AT2G40070.2  
At2g40070	chr2:016730968	0.0	C/16730968-16731160,16730755-16730869,16730165-16730279,16728721-16729857,16728378-16728641	AT2G40070.1  CDS  gene_syn T28M21.23, T28M21_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Has 94255 Blast hits to 49644 proteins in 1573 species: Archae - 225; Bacteria - 11215; Metazoa - 37735; Fungi - 21320; Plants - 3339; Viruses - 2662; Other Eukaryotes - 17759 (source: NCBI BLink).  protein_id AT2G40070.1p  transcript_id AT2G40070.1  protein_id AT2G40070.1p  transcript_id AT2G40070.1  
At2g40080	chr2:016734545	0.0	C/16734545-16734880	AT2G40080.1  CDS  gene_syn EARLY FLOWERING 4, ELF4, T28M21.24, T28M21_24  gene ELF4  function Encodes a novel nuclear 111 amino-acid phytochrome-regulated component of a negative feedback loop involving the circadian clock central oscillator components CCA1 and LHY. ELF4 is necessary for light-induced expression of both CCA1 and LHY, and conversely, CCA1 and LHY act negatively on light-induced ELF4 expression. ELF4 promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles. It is involved in the phyB-mediated constant red light induced seedling de-etiolation process and may function to coregulate the expression of a subset of phyB-regulated genes.  go_component nucleus|GO:0005634|14605220|IDA  go_process photoperiodism|GO:0009648|12214234|IMP  go_process regulation of flower development|GO:0009909|12214234|IMP  go_process red or far red light signaling pathway|GO:0010017|16891401|IMP  go_process response to red light|GO:0010114|14605220|IMP  go_process positive regulation of circadian rhythm|GO:0042753|12214234|IMP  go_process photoperiodism, flowering|GO:0048573|18799658|IMP  go_function molecular_function|GO:0003674||ND  product ELF4 (EARLY FLOWERING 4)  note EARLY FLOWERING 4 (ELF4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1313 (InterPro:IPR009741); BEST Arabidopsis thaliana protein match is: ELF4-L1 (ELF4-Like 1) (TAIR:AT2G29950.1); Has 68 Blast hits to 67 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G40080.1p  transcript_id AT2G40080.1  protein_id AT2G40080.1p  transcript_id AT2G40080.1  
At2g40081	chr2:016735002	0.0	C/16735002-16735115	AT2G40081.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G40081.1p  transcript_id AT2G40081.1  protein_id AT2G40081.1p  transcript_id AT2G40081.1  
At2g40085	chr2:016736673	0.0	C/16736673-16736892,16736534-16736595	AT2G40085.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G40085.1p  transcript_id AT2G40085.1  protein_id AT2G40085.1p  transcript_id AT2G40085.1  
At2g40090	chr2:016740120	0.0	C/16740120-16740303,16739727-16739881,16739494-16739619,16739298-16739393,16739096-16739196,16738976-16739012,16738555-16738773,16737685-16738383	AT2G40090.1  CDS  gene_syn ATATH9, F27I1.1, F27I1_1  gene ATATH9  function member of ATH subfamily  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  product ATATH9; transporter  note ATATH9; FUNCTIONS IN: transporter activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ABC1 family protein (TAIR:AT1G65950.1); Has 6498 Blast hits to 6487 proteins in 1092 species: Archae - 67; Bacteria - 2601; Metazoa - 341; Fungi - 317; Plants - 333; Viruses - 9; Other Eukaryotes - 2830 (source: NCBI BLink).  protein_id AT2G40090.1p  transcript_id AT2G40090.1  protein_id AT2G40090.1p  transcript_id AT2G40090.1  
At2g40095	chr2:016743107	0.0	W/16743107-16743386,16743510-16743790,16744387-16744455	AT2G40095.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55880.2); Has 53 Blast hits to 53 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G40095.1p  transcript_id AT2G40095.1  protein_id AT2G40095.1p  transcript_id AT2G40095.1  
At2g40100	chr2:016745884	0.0	W/16745884-16746396,16746873-16747190	AT2G40100.1  CDS  gene_syn F27I1.2, F27I1_2, LHCB4.3, light harvesting complex PSII  gene LHCB4.3  function Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem II  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component light-harvesting complex|GO:0030076||ISS  go_process response to blue light|GO:0009637|18820083|IEP  go_process response to red light|GO:0010114|18820083|IEP  go_process response to far red light|GO:0010218|18820083|IEP  go_process photosynthesis|GO:0015979||ISS  go_function chlorophyll binding|GO:0016168||ISS  product LHCB4.3 (light harvesting complex PSII); chlorophyll binding  note light harvesting complex PSII (LHCB4.3); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light, photosynthesis; LOCATED IN: light-harvesting complex, thylakoid, chloroplast thylakoid membrane, chloroplast, membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: chlorophyll A-B binding protein CP29 (LHCB4) (TAIR:AT5G01530.1); Has 1722 Blast hits to 1661 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1477; Viruses - 0; Other Eukaryotes - 243 (source: NCBI BLink).  protein_id AT2G40100.1p  transcript_id AT2G40100.1  protein_id AT2G40100.1p  transcript_id AT2G40100.1  
At2g40110	chr2:016748159	0.0	W/16748159-16748254,16748830-16748873,16748948-16749056,16749143-16749198,16749270-16749357	AT2G40110.1  CDS  gene_syn F27I1.3, F27I1_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product yippee family protein  note yippee family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Yippee-like protein (InterPro:IPR004910); BEST Arabidopsis thaliana protein match is: yippee family protein (TAIR:AT3G11230.2); Has 697 Blast hits to 697 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 401; Fungi - 131; Plants - 111; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT2G40110.1p  transcript_id AT2G40110.1  protein_id AT2G40110.1p  transcript_id AT2G40110.1  
At2g40110	chr2:016748159	0.0	W/16748159-16748254,16748830-16748873,16748948-16749056,16749143-16749226	AT2G40110.2  CDS  gene_syn F27I1.3, F27I1_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product yippee family protein  note yippee family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Yippee-like protein (InterPro:IPR004910); BEST Arabidopsis thaliana protein match is: yippee family protein (TAIR:AT3G08990.1); Has 697 Blast hits to 697 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 401; Fungi - 131; Plants - 111; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT2G40110.2p  transcript_id AT2G40110.2  protein_id AT2G40110.2p  transcript_id AT2G40110.2  
At2g40113	chr2:016750254	0.0	W/16750254-16750434,16750578-16750906	AT2G40113.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47635.1); Has 27 Blast hits to 27 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G40113.1p  transcript_id AT2G40113.1  protein_id AT2G40113.1p  transcript_id AT2G40113.1  
At2g40116	chr2:016751782	0.0	W/16751782-16752183,16752262-16752458,16752543-16752678,16752763-16753017,16753102-16753301,16753379-16753496,16753605-16753757,16753853-16753939,16754018-16754311	AT2G40116.1  CDS  go_process lipid metabolic process|GO:0006629||IEA  go_process signal transduction|GO:0007165||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_function phosphoinositide phospholipase C activity|GO:0004435||IEA  go_function phospholipase C activity|GO:0004629||IEA  go_function phosphoric diester hydrolase activity|GO:0008081||IEA  go_component cellular_component|GO:0005575||ND  go_process lipid metabolic process|GO:0006629||ISS  go_process signal transduction|GO:0007165||ISS  go_process intracellular signaling cascade|GO:0007242||ISS  go_function phosphoinositide phospholipase C activity|GO:0004435||ISS  product phosphoinositide-specific phospholipase C family protein  note phosphoinositide-specific phospholipase C family protein; FUNCTIONS IN: phospholipase C activity, phosphoinositide phospholipase C activity, phosphoric diester hydrolase activity; INVOLVED IN: signal transduction, intracellular signaling cascade, lipid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphoinositol-specific, EF-hand-like (InterPro:IPR015359), Phospholipase C, phosphatidylinositol-specific , X region (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phospholipase C, phosphoinositol-specific, C-terminal (PLC) (InterPro:IPR001192), C2 calcium-dependent membrane targeting (InterPro:IPR000008), Phospholipase C, phosphatidylinositol-specific, Y domain (InterPro:IPR001711); BEST Arabidopsis thaliana protein match is: ATPLC2 (PHOSPHOLIPASE C 2); phospholipase C (TAIR:AT3G08510.2); Has 2150 Blast hits to 1783 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 1549; Fungi - 252; Plants - 167; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink).  protein_id AT2G40116.1p  transcript_id AT2G40116.1  protein_id AT2G40116.1p  transcript_id AT2G40116.1  
At2g40120	chr2:016756985	0.0	C/16756985-16757258,16756437-16756881,16756089-16756368,16755628-16756014,16755392-16755535,16755137-16755319	AT2G40120.1  CDS  gene_syn T7M7.1, T7M7_1  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cytoplasm|GO:0005737|15469496|IDA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G17750.1); Has 65627 Blast hits to 64489 proteins in 2041 species: Archae - 50; Bacteria - 5400; Metazoa - 28985; Fungi - 7798; Plants - 8456; Viruses - 355; Other Eukaryotes - 14583 (source: NCBI BLink).  protein_id AT2G40120.1p  transcript_id AT2G40120.1  protein_id AT2G40120.1p  transcript_id AT2G40120.1  
At2g40130	chr2:016766030	0.0	W/16766030-16767213,16767412-16767604,16767723-16767821	AT2G40130.1  CDS  gene_syn T7M7.2, T7M7_2  go_process biological_process|GO:0008150||ND  product heat shock protein-related  note heat shock protein-related; INVOLVED IN: biological_process unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: heat shock protein-related (TAIR:AT2G29970.1); Has 116 Blast hits to 114 proteins in 16 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 112; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G40130.1p  transcript_id AT2G40130.1  protein_id AT2G40130.1p  transcript_id AT2G40130.1  
At2g40130	chr2:016766030	0.0	W/16766030-16767213,16767412-16767608,16767723-16769074	AT2G40130.2  CDS  gene_syn T7M7.2, T7M7_2  go_function ATP binding|GO:0005524||IEA  go_process biological_process|GO:0008150||ND  product heat shock protein-related  note heat shock protein-related; FUNCTIONS IN: ATP binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ATPase associated with various cellular activities, AAA-2 (InterPro:IPR013093); BEST Arabidopsis thaliana protein match is: heat shock protein-related (TAIR:AT2G29970.1); Has 8130 Blast hits to 8061 proteins in 1478 species: Archae - 11; Bacteria - 5866; Metazoa - 9; Fungi - 158; Plants - 319; Viruses - 0; Other Eukaryotes - 1767 (source: NCBI BLink).  protein_id AT2G40130.2p  transcript_id AT2G40130.2  protein_id AT2G40130.2p  transcript_id AT2G40130.2  
At2g40140	chr2:016772537	0.0	W/16772537-16774330	AT2G40140.1  CDS  gene_syn (SALT-INDUCIBLE ZINC FINGER 2, ATSZF2, CZF1, SZF2, T7M7.3, T7M7_3, ZFAR1  gene CZF1  go_component cellular_component|GO:0005575||ND  go_process response to cold|GO:0009409|16258011|IEP  go_process response to chitin|GO:0010200|17722694|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process defense response to fungus|GO:0050832|16925600|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product CZF1; transcription factor  note CZF1; FUNCTIONS IN: transcription factor activity; INVOLVED IN: defense response to fungus, response to cold, response to chitin, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: SZF1 (SALT-INDUCIBLE ZINC FINGER 1); transcription factor (TAIR:AT3G55980.1); Has 847 Blast hits to 803 proteins in 134 species: Archae - 2; Bacteria - 35; Metazoa - 340; Fungi - 36; Plants - 230; Viruses - 2; Other Eukaryotes - 202 (source: NCBI BLink).  protein_id AT2G40140.1p  transcript_id AT2G40140.1  protein_id AT2G40140.1p  transcript_id AT2G40140.1  
At2g40140	chr2:016772537	0.0	W/16772537-16774330	AT2G40140.2  CDS  gene_syn (SALT-INDUCIBLE ZINC FINGER 2, ATSZF2, CZF1, SZF2, T7M7.3, T7M7_3, ZFAR1  gene CZF1  go_component cellular_component|GO:0005575||ND  go_process response to cold|GO:0009409|16258011|IEP  go_process response to chitin|GO:0010200|17722694|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process defense response to fungus|GO:0050832|16925600|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product CZF1; transcription factor  note CZF1; FUNCTIONS IN: transcription factor activity; INVOLVED IN: defense response to fungus, response to cold, response to chitin, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: SZF1 (SALT-INDUCIBLE ZINC FINGER 1); transcription factor (TAIR:AT3G55980.1); Has 847 Blast hits to 803 proteins in 134 species: Archae - 2; Bacteria - 35; Metazoa - 340; Fungi - 36; Plants - 230; Viruses - 2; Other Eukaryotes - 202 (source: NCBI BLink).  protein_id AT2G40140.2p  transcript_id AT2G40140.2  protein_id AT2G40140.2p  transcript_id AT2G40140.2  
At2g40150	chr2:016775511	0.0	W/16775511-16775887,16775979-16776150,16776250-16776449,16776536-16776694,16776775-16777141	AT2G40150.1  CDS  gene_syn T7M7.4, T7M7_4  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: ESK1 (ESKIMO 1) (TAIR:AT3G55990.1); Has 712 Blast hits to 693 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 712; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G40150.1p  transcript_id AT2G40150.1  protein_id AT2G40150.1p  transcript_id AT2G40150.1  
At2g40160	chr2:016777448	0.0	W/16777448-16777842,16777931-16778102,16778194-16778396,16778481-16778645,16778715-16779063	AT2G40160.1  CDS  gene_syn T7M7.25, T7M7_25  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, leaf whorl, hypocotyl, root, leaf; EXPRESSED DURING: LP.02 two leaves visible; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: ESK1 (ESKIMO 1) (TAIR:AT3G55990.1); Has 710 Blast hits to 697 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 710; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G40160.1p  transcript_id AT2G40160.1  protein_id AT2G40160.1p  transcript_id AT2G40160.1  
At2g40170	chr2:016780053	0.0	C/16780053-16780167,16779792-16779955	AT2G40170.1  CDS  gene_syn ARABIDOPSIS EARLY METHIONINE-LABELLED 6, ATEM6, GEA6, LATE EMBRYOGENESIS ABUNDANT 6, T7M7.23  gene GEA6  function Encodes a group 1 LEA gene that is activated by direct binding of ABI5 to its promoter and is involved in response to ABA. Is required for normal seed development. Involved in regulating the timing of dessication tolerance and rate of water loss during seed maturation.  go_component cellular_component|GO:0005575||ND  go_process response to abscisic acid stimulus|GO:0009737|8492809|TAS  go_process seed development|GO:0048316|16361514|IMP  go_process acquisition of desiccation tolerance|GO:0048700|19073649|IMP  go_function molecular_function|GO:0003674||ND  product GEA6 (LATE EMBRYOGENESIS ABUNDANT 6)  note LATE EMBRYOGENESIS ABUNDANT 6 (GEA6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: acquisition of desiccation tolerance, seed development, response to abscisic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, seed; EXPRESSED DURING: seed maturation stage; CONTAINS InterPro DOMAIN/s: Small hydrophilic plant seed protein (InterPro:IPR000389); BEST Arabidopsis thaliana protein match is: EM1 (LATE EMBRYOGENESIS ABUNDANT 1) (TAIR:AT3G51810.1); Has 170 Blast hits to 147 proteins in 34 species: Archae - 0; Bacteria - 8; Metazoa - 8; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G40170.1p  transcript_id AT2G40170.1  protein_id AT2G40170.1p  transcript_id AT2G40170.1  
At2g40180	chr2:016782522	0.0	W/16782522-16783349,16783582-16783761,16783850-16784014	AT2G40180.1  CDS  gene_syn ATHPP2C5, T7M7.17  gene ATHPP2C5  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product ATHPP2C5; catalytic/ protein serine/threonine phosphatase  note ATHPP2C5; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT2G30020.1); Has 4428 Blast hits to 4380 proteins in 326 species: Archae - 4; Bacteria - 211; Metazoa - 1380; Fungi - 537; Plants - 1317; Viruses - 9; Other Eukaryotes - 970 (source: NCBI BLink).  protein_id AT2G40180.1p  transcript_id AT2G40180.1  protein_id AT2G40180.1p  transcript_id AT2G40180.1  
At2g40190	chr2:016785232	0.0	W/16785232-16785531,16785686-16785972,16786070-16786256,16786347-16786415,16786526-16786719,16786813-16786922,16787013-16787257	AT2G40190.1  CDS  gene_syn T7M7.7, T7M7_7  go_component endomembrane system|GO:0012505||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyl transferase family 1 protein  note glycosyl transferase family 1 protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: glycosyl transferase family 1 protein (TAIR:AT1G78800.1); Has 875 Blast hits to 875 proteins in 252 species: Archae - 87; Bacteria - 181; Metazoa - 196; Fungi - 166; Plants - 38; Viruses - 0; Other Eukaryotes - 207 (source: NCBI BLink).  protein_id AT2G40190.1p  transcript_id AT2G40190.1  protein_id AT2G40190.1p  transcript_id AT2G40190.1  
At2g40200	chr2:016791098	0.0	W/16791098-16791379,16791545-16792027	AT2G40200.1  CDS  gene_syn T7M7.8, T7M7_8  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BHLH32 (BASIC HELIX-LOOP-HELIX 32); DNA binding / transcription factor (TAIR:AT3G25710.1); Has 1207 Blast hits to 1207 proteins in 120 species: Archae - 0; Bacteria - 2; Metazoa - 236; Fungi - 4; Plants - 958; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT2G40200.1p  transcript_id AT2G40200.1  protein_id AT2G40200.1p  transcript_id AT2G40200.1  
At2g40205	chr2:016792520	0.0	C/16792520-16792531,16792355-16792420	AT2G40205.1  CDS  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L41 (RPL41C)  note 60S ribosomal protein L41 (RPL41C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, ribosome; CONTAINS InterPro DOMAIN/s: Ribosomal protein L41 (InterPro:IPR007836); Has 170 Blast hits to 170 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 77; Fungi - 35; Plants - 49; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G40205.1p  transcript_id AT2G40205.1  protein_id AT2G40205.1p  transcript_id AT2G40205.1  
At2g40210	chr2:016793213	0.0	C/16793213-16794328	AT2G40210.1  CDS  gene_syn AGAMOUS-LIKE 48, AGL48, T7M7.9, T7M7_9  gene AGL48  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product AGL48 (AGAMOUS-LIKE 48); transcription factor  note AGAMOUS-LIKE 48 (AGL48); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL41 (AGAMOUS-LIKE 41); DNA binding / transcription factor (TAIR:AT2G26880.1); Has 2061 Blast hits to 2059 proteins in 276 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 42; Plants - 2002; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT2G40210.1p  transcript_id AT2G40210.1  protein_id AT2G40210.1p  transcript_id AT2G40210.1  
At2g40220	chr2:016796599	0.0	C/16796599-16797585	AT2G40220.1  CDS  gene_syn ABA INSENSITIVE 4, ABI4, ABSCISIC ACID-INSENSITIVE PROTEIN 4, GIN6, GLUCOSE INSENSITIVE 6, IMPAIRED SUCROSE INDUCTION 3, ISI3, SALOBRENO 5, SAN5, SIS5, SUCROSE UNCOUPLED 6, SUGAR-INSENSITIVE 5, SUN6, T7M7.16  gene ABI4  function encodes a member of the DREB subfamily A-3 of ERF/AP2 transcription factor family (ABI4). The protein contains one AP2 domain. There is only one member in this family. Involved in abscisic acid (ABA) signal transduction, ABA-mediated glucose response, and hexokinase-dependent sugar responses. Expressed most abundantly in developing siliques and to a lesser degree in seedlings.  go_component nucleus|GO:0005634||ISS  go_process starch catabolic process|GO:0005983|17031512|NAS  go_process regulation of transcription, DNA-dependent|GO:0006355|11019812|TAS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to osmotic stress|GO:0006970|10629000|IMP  go_process response to water deprivation|GO:0009414|16113213|IMP  go_process response to abscisic acid stimulus|GO:0009737||NAS  go_process abscisic acid mediated signaling|GO:0009738|10950871|IMP  go_process response to sucrose stimulus|GO:0009744|9418043|IEP  go_process hexokinase-dependent signaling|GO:0009747||NAS  go_process response to glucose stimulus|GO:0009749|10950871|IMP  go_process response to glucose stimulus|GO:0009749|19392689|IMP  go_process sugar mediated signaling|GO:0010182|12663220|TAS  go_process response to trehalose stimulus|GO:0010353|17031512|IEP  go_process response to trehalose stimulus|GO:0010353|17031512|IMP  go_process triglyceride catabolic process|GO:0019433|12662310|IMP  go_process seed development|GO:0048316|9634591|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11019812|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function promoter binding|GO:0010843|19392689|IDA  product ABI4 (ABA INSENSITIVE 4); DNA binding / transcription factor  note ABA INSENSITIVE 4 (ABI4); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 13 processes; LOCATED IN: nucleus; EXPRESSED IN: embryo, fruit, endosperm; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT3G57600.1); Has 3881 Blast hits to 3808 proteins in 234 species: Archae - 0; Bacteria - 4; Metazoa - 57; Fungi - 8; Plants - 3709; Viruses - 3; Other Eukaryotes - 100 (source: NCBI BLink).  protein_id AT2G40220.1p  transcript_id AT2G40220.1  protein_id AT2G40220.1p  transcript_id AT2G40220.1  
At2g40230	chr2:016803285	0.0	C/16803285-16804586	AT2G40230.1  CDS  gene_syn T7M7.11, T7M7_11  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT1G27620.1); Has 1254 Blast hits to 1245 proteins in 116 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 36; Plants - 1215; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G40230.1p  transcript_id AT2G40230.1  protein_id AT2G40230.1p  transcript_id AT2G40230.1  
At2g40233	chr2:016807047	0.0	W/16807047-16807208	AT2G40233.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G40233.1p  transcript_id AT2G40233.1  protein_id AT2G40233.1p  transcript_id AT2G40233.1  
At2g40240	chr2:016811051	0.0	W/16811051-16812106	AT2G40240.1  CDS  gene_syn T7M7.22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56030.1); Has 9083 Blast hits to 2533 proteins in 96 species: Archae - 0; Bacteria - 0; Metazoa - 120; Fungi - 21; Plants - 8812; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink).  protein_id AT2G40240.1p  transcript_id AT2G40240.1  protein_id AT2G40240.1p  transcript_id AT2G40240.1  
At2g40250	chr2:016813330	0.0	W/16813330-16813953,16814677-16814950,16815064-16815251	AT2G40250.1  CDS  gene_syn T7M7.5  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, sepal, pedicel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT2G31540.1); Has 1851 Blast hits to 1832 proteins in 161 species: Archae - 0; Bacteria - 242; Metazoa - 1; Fungi - 7; Plants - 1581; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT2G40250.1p  transcript_id AT2G40250.1  protein_id AT2G40250.1p  transcript_id AT2G40250.1  
At2g40260	chr2:016818155	0.0	C/16818155-16818473,16817954-16818030,16817823-16817859,16817595-16817697,16816818-16817514	AT2G40260.1  CDS  gene_syn T7M7.13  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT2G38300.1); Has 1157 Blast hits to 1138 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi - 16; Plants - 880; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink).  protein_id AT2G40260.1p  transcript_id AT2G40260.1  protein_id AT2G40260.1p  transcript_id AT2G40260.1  
At2g40270	chr2:016824246	0.0	C/16824246-16824327,16824068-16824137,16823312-16823694,16823020-16823210,16822809-16822941,16822136-16822725	AT2G40270.2  CDS  gene_syn T7M7.19  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G56050.2); Has 26725 Blast hits to 26496 proteins in 928 species: Archae - 2; Bacteria - 1013; Metazoa - 9652; Fungi - 685; Plants - 12591; Viruses - 117; Other Eukaryotes - 2665 (source: NCBI BLink).  protein_id AT2G40270.2p  transcript_id AT2G40270.2  protein_id AT2G40270.2p  transcript_id AT2G40270.2  
At2g40270	chr2:016824246	0.0	C/16824246-16824327,16824068-16824137,16823312-16823715,16823020-16823210,16822809-16822941,16822136-16822725	AT2G40270.1  CDS  gene_syn T7M7.19  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G56050.2); Has 26726 Blast hits to 26497 proteins in 928 species: Archae - 2; Bacteria - 1013; Metazoa - 9654; Fungi - 683; Plants - 12592; Viruses - 117; Other Eukaryotes - 2665 (source: NCBI BLink).  protein_id AT2G40270.1p  transcript_id AT2G40270.1  protein_id AT2G40270.1p  transcript_id AT2G40270.1  
At2g40280	chr2:016827869	0.0	C/16827869-16828300,16827520-16827669,16827164-16827434,16826973-16827083,16826717-16826885,16826386-16826625,16826096-16826290,16825707-16825908	AT2G40280.1  CDS  gene_syn T7M7.24  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  product dehydration-responsive family protein  note dehydration-responsive family protein; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive protein-related (TAIR:AT2G34300.2); Has 686 Blast hits to 669 proteins in 119 species: Archae - 2; Bacteria - 132; Metazoa - 23; Fungi - 33; Plants - 473; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT2G40280.1p  transcript_id AT2G40280.1  protein_id AT2G40280.1p  transcript_id AT2G40280.1  
At2g40290	chr2:016830506	0.0	C/16830506-16830889,16830319-16830375,16830153-16830239,16829872-16830069	AT2G40290.2  CDS  gene_syn T7M7.14  go_process translation|GO:0006412||IEA  go_function RNA binding|GO:0003723||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_function RNA binding|GO:0003723||ISS  product eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative  note eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), S1, RNA binding (InterPro:IPR003029), Eukaryotic translation initiation factor 2, alpha subunit (InterPro:IPR011488); BEST Arabidopsis thaliana protein match is: EIF2 ALPHA; RNA binding / translation initiation factor (TAIR:AT5G05470.1); Has 3226 Blast hits to 2823 proteins in 1030 species: Archae - 143; Bacteria - 2009; Metazoa - 146; Fungi - 89; Plants - 52; Viruses - 31; Other Eukaryotes - 756 (source: NCBI BLink).  protein_id AT2G40290.2p  transcript_id AT2G40290.2  protein_id AT2G40290.2p  transcript_id AT2G40290.2  
At2g40290	chr2:016830506	0.0	C/16830506-16830889,16830319-16830375,16830153-16830239,16829872-16830069	AT2G40290.3  CDS  gene_syn T7M7.14  go_process translation|GO:0006412||IEA  go_function RNA binding|GO:0003723||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_function RNA binding|GO:0003723||ISS  product eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative  note eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), S1, RNA binding (InterPro:IPR003029), Eukaryotic translation initiation factor 2, alpha subunit (InterPro:IPR011488); BEST Arabidopsis thaliana protein match is: EIF2 ALPHA; RNA binding / translation initiation factor (TAIR:AT5G05470.1); Has 3226 Blast hits to 2823 proteins in 1030 species: Archae - 143; Bacteria - 2009; Metazoa - 146; Fungi - 89; Plants - 52; Viruses - 31; Other Eukaryotes - 756 (source: NCBI BLink).  protein_id AT2G40290.3p  transcript_id AT2G40290.3  protein_id AT2G40290.3p  transcript_id AT2G40290.3  
At2g40290	chr2:016830506	0.0	C/16830506-16830889,16830319-16830375,16830153-16830239,16829923-16830069,16829730-16829834,16829323-16829421,16829030-16829185	AT2G40290.1  CDS  gene_syn T7M7.14  go_component nucleus|GO:0005634|14617066|IDA  go_process translation|GO:0006412||IEA  go_function RNA binding|GO:0003723||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_function RNA binding|GO:0003723||ISS  product eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative  note eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translation; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), S1, RNA binding (InterPro:IPR003029), Eukaryotic translation initiation factor 2, alpha subunit (InterPro:IPR011488); BEST Arabidopsis thaliana protein match is: EIF2 ALPHA; RNA binding / translation initiation factor (TAIR:AT5G05470.1); Has 3250 Blast hits to 2835 proteins in 1032 species: Archae - 145; Bacteria - 2021; Metazoa - 147; Fungi - 90; Plants - 52; Viruses - 31; Other Eukaryotes - 764 (source: NCBI BLink).  protein_id AT2G40290.1p  transcript_id AT2G40290.1  protein_id AT2G40290.1p  transcript_id AT2G40290.1  
At2g40300	chr2:016832898	0.0	C/16832898-16833214,16832662-16832745,16832517-16832577,16832344-16832431,16832025-16832086,16831842-16831907,16831674-16831737,16831501-16831538	AT2G40300.1  CDS  gene_syn ATFER4, T7M7.6, ferritin 4  gene ATFER4  function Encodes FERRITIN 4, AtFER4. Ferritins are a class of 24-mer multi-meric proteins found in all kingdoms of life. Function as the main iron store in mammals. Evidence suggests that Arabidopsis ferritins are essential to protect cells against oxidative damage, but they do not constitute the major iron pool.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function binding|GO:0005488||IEA  go_function ferric iron binding|GO:0008199||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function transition metal ion binding|GO:0046914||IEA  go_component chloroplast|GO:0009507|11672431|ISS  go_process response to reactive oxygen species|GO:0000302|18826427|IGI  go_process iron ion transport|GO:0006826|18826427|IGI  go_process iron ion transport|GO:0006826||ISS  go_process cellular iron ion homeostasis|GO:0006879||ISS  go_process flower development|GO:0009908|18826427|IGI  go_process response to iron ion|GO:0010039|11672431|IEP  go_process photosynthesis|GO:0015979|18826427|IGI  go_process leaf development|GO:0048366|18826427|IGI  go_process iron ion homeostasis|GO:0055072|18826427|IGI  go_function ferric iron binding|GO:0008199||ISS  product ATFER4 (ferritin 4); binding / ferric iron binding / oxidoreductase/ transition metal ion binding  note ferritin 4 (ATFER4); FUNCTIONS IN: oxidoreductase activity, ferric iron binding, binding, transition metal ion binding; INVOLVED IN: in 8 processes; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferritin, N-terminal (InterPro:IPR001519), Ferritin-related (InterPro:IPR012347), Ferritin-like (InterPro:IPR009040), Ferritin, conserved site (InterPro:IPR014034), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078), Ferritin and Dps (InterPro:IPR008331); BEST Arabidopsis thaliana protein match is: ATFER3 (ferritin 3); binding / ferric iron binding / oxidoreductase/ transition metal ion binding (TAIR:AT3G56090.1); Has 2758 Blast hits to 2753 proteins in 770 species: Archae - 123; Bacteria - 1084; Metazoa - 1116; Fungi - 8; Plants - 217; Viruses - 0; Other Eukaryotes - 210 (source: NCBI BLink).  protein_id AT2G40300.1p  transcript_id AT2G40300.1  protein_id AT2G40300.1p  transcript_id AT2G40300.1  
At2g40310	chr2:016834065	0.0	W/16834065-16834208,16834392-16834703,16834853-16835377,16835478-16835711	AT2G40310.1  CDS  gene_syn T7M7.10  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: polygalacturonase (TAIR:AT4G13760.1); Has 2349 Blast hits to 2340 proteins in 292 species: Archae - 2; Bacteria - 417; Metazoa - 8; Fungi - 973; Plants - 878; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT2G40310.1p  transcript_id AT2G40310.1  protein_id AT2G40310.1p  transcript_id AT2G40310.1  
At2g40316	chr2:016836355	0.0	W/16836355-16836524,16836735-16836777,16837118-16837171,16837284-16837347,16837486-16837542,16837694-16837800,16837903-16837941,16838125-16838213,16838304-16838382,16838471-16838518,16838608-16838688	AT2G40316.1  CDS  gene_syn AT2G40313, T7M7.21, T7M7_21  go_component endomembrane system|GO:0012505||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 100 Blast hits to 100 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 33; Fungi - 39; Plants - 20; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT2G40316.1p  transcript_id AT2G40316.1  protein_id AT2G40316.1p  transcript_id AT2G40316.1  
At2g40316	chr2:016836768	0.0	W/16836768-16836794,16837118-16837171,16837284-16837347,16837694-16837800,16837903-16837941,16838125-16838213,16838304-16838382,16838471-16838518,16838608-16838688	AT2G40316.2  CDS  gene_syn AT2G40313, T7M7.21, T7M7_21  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 100 Blast hits to 100 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 33; Fungi - 41; Plants - 18; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT2G40316.2p  transcript_id AT2G40316.2  protein_id AT2G40316.2p  transcript_id AT2G40316.2  
At2g40320	chr2:016840330	0.0	W/16840330-16840513,16840612-16840834,16840927-16841098,16841168-16841367,16841460-16841618,16841800-16842139	AT2G40320.1  CDS  gene_syn T7M7.12  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11030.1); Has 733 Blast hits to 721 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 0; Plants - 712; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G40320.1p  transcript_id AT2G40320.1  protein_id AT2G40320.1p  transcript_id AT2G40320.1  
At2g40330	chr2:016845177	0.0	C/16845177-16845824	AT2G40330.1  CDS  gene_syn T7M7.15  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Bet v I allergen family protein  note Bet v I allergen family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38310.1); Has 230 Blast hits to 230 proteins in 29 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 222; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G40330.1p  transcript_id AT2G40330.1  protein_id AT2G40330.1p  transcript_id AT2G40330.1  
At2g40340	chr2:016850335	0.0	C/16850335-16850357,16848665-16849667	AT2G40340.1  CDS  gene_syn T7M7.18  function encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process heat acclimation|GO:0010286|16807682|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative (DRE2B)  note AP2 domain-containing transcription factor, putative (DRE2B); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: heat acclimation, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: stem, flower; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT2G40350.1); Has 3657 Blast hits to 3621 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3646; Viruses - 2; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G40340.1p  transcript_id AT2G40340.1  protein_id AT2G40340.1p  transcript_id AT2G40340.1  
At2g40350	chr2:016851595	0.0	C/16851595-16852068	AT2G40350.1  CDS  gene_syn T3G21.12, T3G21_12  function encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process heat acclimation|GO:0010286|16807682|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product DNA binding / transcription factor  note DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: heat acclimation, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (DRE2B) (TAIR:AT2G40340.1); Has 3277 Blast hits to 3273 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3270; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT2G40350.1p  transcript_id AT2G40350.1  protein_id AT2G40350.1p  transcript_id AT2G40350.1  
At2g40360	chr2:016856471	0.0	C/16856471-16856635,16856261-16856384,16855921-16856057,16855672-16855826,16855475-16855592,16855125-16855383,16854925-16855033,16854735-16854837,16854504-16854654,16854289-16854421,16854104-16854210,16853939-16854003,16853313-16853862,16853123-16853208	AT2G40360.1  CDS  gene_syn T3G21.13, T3G21_13  go_component nucleus|GO:0005634||IEA  go_process rRNA processing|GO:0006364||IEA  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: rRNA processing; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), BOP1, N-terminal (InterPro:IPR012953); BEST Arabidopsis thaliana protein match is: RAPTOR1; nucleotide binding / protein binding (TAIR:AT3G08850.1); Has 31656 Blast hits to 10343 proteins in 525 species: Archae - 96; Bacteria - 17924; Metazoa - 5398; Fungi - 2673; Plants - 912; Viruses - 198; Other Eukaryotes - 4455 (source: NCBI BLink).  protein_id AT2G40360.1p  transcript_id AT2G40360.1  protein_id AT2G40360.1p  transcript_id AT2G40360.1  
At2g40370	chr2:016860492	0.0	C/16860492-16860593,16860243-16860394,16859902-16860146,16859678-16859806,16858504-16859487,16858192-16858322	AT2G40370.1  CDS  gene_syn LAC5, T3G21.14, T3G21_14, laccase 5  gene LAC5  function putative laccase, a member of laccase family of genes (17 members in Arabidopsis).  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process lignin catabolic process|GO:0046274||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function laccase activity|GO:0008471|15940465|ISS  product LAC5 (laccase 5); laccase  note laccase 5 (LAC5); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: LAC12 (laccase 12); laccase (TAIR:AT5G05390.1); Has 6925 Blast hits to 5619 proteins in 885 species: Archae - 20; Bacteria - 2463; Metazoa - 419; Fungi - 2761; Plants - 897; Viruses - 0; Other Eukaryotes - 365 (source: NCBI BLink).  protein_id AT2G40370.1p  transcript_id AT2G40370.1  protein_id AT2G40370.1p  transcript_id AT2G40370.1  
At2g40380	chr2:016864734	0.0	C/16864734-16865375	AT2G40380.1  CDS  gene_syn PRA1.B2, PRENYLATED RAB ACCEPTOR 1.B2, T3G21.15, T3G21_15  gene PRA1.B2  go_component endoplasmic reticulum|GO:0005783|18583532|IDA  go_process vesicle-mediated transport|GO:0016192|18583532|IDA  go_function molecular_function|GO:0003674||ND  product PRA1.B2 (PRENYLATED RAB ACCEPTOR 1.B2)  note PRENYLATED RAB ACCEPTOR 1.B2 (PRA1.B2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: PRA1.B1 (PRENYLATED RAB ACCEPTOR 1.B1) (TAIR:AT3G56110.1); Has 382 Blast hits to 382 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 101; Fungi - 64; Plants - 187; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT2G40380.1p  transcript_id AT2G40380.1  protein_id AT2G40380.1p  transcript_id AT2G40380.1  
At2g40390	chr2:016867385	0.0	W/16867385-16868235,16868322-16868961	AT2G40390.1  CDS  gene_syn T3G21.16, T3G21_16  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64190.1); Has 50 Blast hits to 50 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G40390.1p  transcript_id AT2G40390.1  protein_id AT2G40390.1p  transcript_id AT2G40390.1  
At2g40400	chr2:016869363	0.0	W/16869363-16869991,16870071-16870200,16870347-16870877,16871147-16871254,16871448-16871996,16872184-16872297,16872423-16872569	AT2G40400.1  CDS  gene_syn T3G21.17, T3G21_17  go_component chloroplast thylakoid lumen|GO:0009543|11719511|ISS  product unknown protein  note unknown protein; LOCATED IN: chloroplast thylakoid lumen; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF399 (InterPro:IPR007314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56140.1); Has 292 Blast hits to 292 proteins in 67 species: Archae - 0; Bacteria - 109; Metazoa - 1; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT2G40400.1p  transcript_id AT2G40400.1  protein_id AT2G40400.1p  transcript_id AT2G40400.1  
At2g40400	chr2:016869363	0.0	W/16869363-16869991,16870071-16870200,16870347-16870877,16871147-16871254,16871448-16871996,16872184-16872297,16872423-16872569	AT2G40400.2  CDS  gene_syn T3G21.17, T3G21_17  go_component chloroplast thylakoid lumen|GO:0009543|11719511|ISS  product unknown protein  note unknown protein; LOCATED IN: chloroplast thylakoid lumen; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF399 (InterPro:IPR007314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56140.1); Has 292 Blast hits to 292 proteins in 67 species: Archae - 0; Bacteria - 109; Metazoa - 1; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT2G40400.2p  transcript_id AT2G40400.2  protein_id AT2G40400.2p  transcript_id AT2G40400.2  
At2g40410	chr2:016873509	0.0	W/16873509-16873655,16873814-16873869,16873971-16874085,16874167-16874277,16874372-16874616,16874705-16874711	AT2G40410.1  CDS  gene_syn T3G21.18, T3G21_18  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function nuclease activity|GO:0004518||ISS  product Ca(2+)-dependent nuclease, putative  note Ca(2+)-dependent nuclease, putative; FUNCTIONS IN: nuclease activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: CAN (CA-2+ DEPENDENT NUCLEASE); nuclease (TAIR:AT3G56170.1); Has 46 Blast hits to 46 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G40410.1p  transcript_id AT2G40410.1  protein_id AT2G40410.1p  transcript_id AT2G40410.1  
At2g40410	chr2:016873509	0.0	W/16873509-16873655,16873814-16873869,16873971-16874085,16874167-16874277,16874372-16874616,16874712-16874871,16874941-16875009,16875120-16875215	AT2G40410.2  CDS  gene_syn T3G21.18, T3G21_18  go_function nucleic acid binding|GO:0003676||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_component cellular_component|GO:0005575||ND  go_function nuclease activity|GO:0004518||ISS  product Ca(2+)-dependent nuclease, putative  note Ca(2+)-dependent nuclease, putative; FUNCTIONS IN: hydrolase activity, acting on ester bonds, nuclease activity, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Staphylococcal nuclease (SNase-like) (InterPro:IPR006021), Staphylococcal nuclease (SNase-like), OB-fold (InterPro:IPR016071); BEST Arabidopsis thaliana protein match is: CAN (CA-2+ DEPENDENT NUCLEASE); nuclease (TAIR:AT3G56170.1); Has 1992 Blast hits to 1992 proteins in 383 species: Archae - 8; Bacteria - 882; Metazoa - 0; Fungi - 70; Plants - 56; Viruses - 2; Other Eukaryotes - 974 (source: NCBI BLink).  protein_id AT2G40410.2p  transcript_id AT2G40410.2  protein_id AT2G40410.2p  transcript_id AT2G40410.2  
At2g40420	chr2:016877300	0.0	W/16877300-16877666,16877753-16877905,16877997-16878203,16878292-16878757,16878853-16878982	AT2G40420.1  CDS  gene_syn T3G21.19, T3G21_19  function Encodes a putative amino acid transporter.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_function amine transmembrane transporter activity|GO:0005275||ISS  product amino acid transporter family protein  note amino acid transporter family protein; FUNCTIONS IN: amine transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid transporter family protein (TAIR:AT3G56200.1); Has 2903 Blast hits to 2871 proteins in 258 species: Archae - 9; Bacteria - 264; Metazoa - 1211; Fungi - 429; Plants - 339; Viruses - 2; Other Eukaryotes - 649 (source: NCBI BLink).  protein_id AT2G40420.1p  transcript_id AT2G40420.1  protein_id AT2G40420.1p  transcript_id AT2G40420.1  
At2g40430	chr2:016882197	0.0	C/16882197-16882365,16881796-16881965,16881661-16881712,16881543-16881568,16881348-16881431,16881136-16881246,16880956-16881038,16880745-16880835,16880592-16880643,16880402-16880492,16880159-16880281,16879931-16880053,16879729-16879795,16879527-16879634	AT2G40430.2  CDS  gene_syn T2P4.22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tumor suppressor protein Gltscr2 (InterPro:IPR011211), P60-like (InterPro:IPR011687); Has 608 Blast hits to 551 proteins in 148 species: Archae - 0; Bacteria - 22; Metazoa - 203; Fungi - 106; Plants - 34; Viruses - 0; Other Eukaryotes - 243 (source: NCBI BLink).  protein_id AT2G40430.2p  transcript_id AT2G40430.2  protein_id AT2G40430.2p  transcript_id AT2G40430.2  
At2g40430	chr2:016882197	0.0	C/16882197-16882365,16881796-16881965,16881661-16881712,16881543-16881568,16881348-16881431,16881136-16881246,16880956-16881038,16880745-16880835,16880592-16880643,16880402-16880492,16880159-16880281,16879931-16880053,16879729-16879795,16879555-16879634,16879466-16879472	AT2G40430.1  CDS  gene_syn T2P4.22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tumor suppressor protein Gltscr2 (InterPro:IPR011211), P60-like (InterPro:IPR011687); Has 601 Blast hits to 544 proteins in 148 species: Archae - 0; Bacteria - 22; Metazoa - 201; Fungi - 103; Plants - 32; Viruses - 0; Other Eukaryotes - 243 (source: NCBI BLink).  protein_id AT2G40430.1p  transcript_id AT2G40430.1  protein_id AT2G40430.1p  transcript_id AT2G40430.1  
At2g40435	chr2:016887048	0.0	W/16887048-16887125,16887571-16887702,16887824-16887994,16888312-16888407	AT2G40435.1  CDS  gene_syn T2P4.23  product unknown protein  note EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: transcription regulator (TAIR:AT3G56220.1); Has 165 Blast hits to 165 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 165; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G40435.1p  transcript_id AT2G40435.1  protein_id AT2G40435.1p  transcript_id AT2G40435.1  
At2g40440	chr2:016891152	0.0	C/16891152-16891292,16890861-16891028,16889458-16889583,16889212-16889361	AT2G40440.1  CDS  gene_syn T2P4.21, T2P4_21  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product BTB/POZ domain-containing protein  note BTB/POZ domain-containing protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: speckle-type POZ protein-related (TAIR:AT2G40450.1); Has 108 Blast hits to 73 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G40440.1p  transcript_id AT2G40440.1  protein_id AT2G40440.1p  transcript_id AT2G40440.1  
At2g40450	chr2:016892653	0.0	C/16892653-16892790,16892024-16892515	AT2G40450.1  CDS  gene_syn T2P4.20, T2P4_20  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product speckle-type POZ protein-related  note speckle-type POZ protein-related; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: speckle-type POZ protein-related (TAIR:AT5G48510.1); Has 1929 Blast hits to 1907 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 1330; Fungi - 3; Plants - 482; Viruses - 37; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT2G40450.1p  transcript_id AT2G40450.1  protein_id AT2G40450.1p  transcript_id AT2G40450.1  
At2g40460	chr2:016897123	0.0	W/16897123-16897228,16897344-16897561,16899026-16899582,16900301-16901171	AT2G40460.1  CDS  gene_syn T2P4.19, T2P4_19  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_process response to nematode|GO:0009624|16478044|IEP  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport, response to nematode; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: PTR3 (PEPTIDE TRANSPORTER 3); dipeptide transporter/ transporter/ tripeptide transporter (TAIR:AT5G46050.1); Has 4449 Blast hits to 4227 proteins in 774 species: Archae - 0; Bacteria - 1953; Metazoa - 561; Fungi - 279; Plants - 1140; Viruses - 0; Other Eukaryotes - 516 (source: NCBI BLink).  protein_id AT2G40460.1p  transcript_id AT2G40460.1  protein_id AT2G40460.1p  transcript_id AT2G40460.1  
At2g40470	chr2:016903533	0.0	C/16903533-16903546,16903116-16903374,16902430-16902831	AT2G40470.1  CDS  gene_syn LBD15, LOB DOMAIN-CONTAINING PROTEIN 15, T2P4.18, T2P4_18  gene LBD15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product LBD15 (LOB DOMAIN-CONTAINING PROTEIN 15)  note LOB DOMAIN-CONTAINING PROTEIN 15 (LBD15); INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, sepal, carpel, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD13 (LOB DOMAIN-CONTAINING PROTEIN 13) (TAIR:AT2G30340.1); Has 579 Blast hits to 576 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 577; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G40470.1p  transcript_id AT2G40470.1  protein_id AT2G40470.1p  transcript_id AT2G40470.1  
At2g40475	chr2:016907222	0.0	C/16907222-16907803	AT2G40475.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; Has 543 Blast hits to 149 proteins in 31 species: Archae - 0; Bacteria - 4; Metazoa - 257; Fungi - 29; Plants - 70; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink).  protein_id AT2G40475.1p  transcript_id AT2G40475.1  protein_id AT2G40475.1p  transcript_id AT2G40475.1  
At2g40480	chr2:016910425	0.0	W/16910425-16910694,16911158-16912444	AT2G40480.1  CDS  gene_syn T2P4.17, T2P4_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56270.1); Has 856 Blast hits to 767 proteins in 138 species: Archae - 0; Bacteria - 60; Metazoa - 416; Fungi - 52; Plants - 138; Viruses - 1; Other Eukaryotes - 189 (source: NCBI BLink).  protein_id AT2G40480.1p  transcript_id AT2G40480.1  protein_id AT2G40480.1p  transcript_id AT2G40480.1  
At2g40490	chr2:016912961	0.0	W/16912961-16913078,16913533-16913657,16913759-16913869,16913965-16914153,16914261-16914386,16914473-16914988	AT2G40490.1  CDS  gene_syn HEME2, T2P4.16, T2P4_16  gene HEME2  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process porphyrin biosynthetic process|GO:0006779||IEA  go_function uroporphyrinogen decarboxylase activity|GO:0004853||IEA  go_function uroporphyrinogen decarboxylase activity|GO:0004853||ISS  product HEME2; uroporphyrinogen decarboxylase  note HEME2; FUNCTIONS IN: uroporphyrinogen decarboxylase activity; INVOLVED IN: porphyrin biosynthetic process; LOCATED IN: chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Uroporphyrinogen decarboxylase HemE (InterPro:IPR006361), Uroporphyrinogen decarboxylase (URO-D) (InterPro:IPR000257); BEST Arabidopsis thaliana protein match is: HEME1; uroporphyrinogen decarboxylase (TAIR:AT3G14930.2); Has 5539 Blast hits to 5539 proteins in 1187 species: Archae - 101; Bacteria - 2315; Metazoa - 206; Fungi - 87; Plants - 67; Viruses - 0; Other Eukaryotes - 2763 (source: NCBI BLink).  protein_id AT2G40490.1p  transcript_id AT2G40490.1  protein_id AT2G40490.1p  transcript_id AT2G40490.1  
At2g40500	chr2:016916330	0.0	W/16916330-16917217	AT2G40500.1  CDS  gene_syn T2P4.15, T2P4_15  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G40560.1); Has 43423 Blast hits to 43023 proteins in 1382 species: Archae - 64; Bacteria - 3676; Metazoa - 20919; Fungi - 4673; Plants - 5056; Viruses - 175; Other Eukaryotes - 8860 (source: NCBI BLink).  protein_id AT2G40500.1p  transcript_id AT2G40500.1  protein_id AT2G40500.1p  transcript_id AT2G40500.1  
At2g40510	chr2:016918506	0.0	W/16918506-16918508,16918593-16918685,16918786-16918870,16919036-16919169,16919537-16919623	AT2G40510.1  CDS  gene_syn T2P4.14, T2P4_14  go_component chloroplast|GO:0009507|15028209|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S26 (RPS26A)  note 40S ribosomal protein S26 (RPS26A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, ribosome, chloroplast; CONTAINS InterPro DOMAIN/s: Ribosomal protein S26e (InterPro:IPR000892); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S26 (RPS26B) (TAIR:AT2G40590.1); Has 605 Blast hits to 605 proteins in 200 species: Archae - 32; Bacteria - 0; Metazoa - 279; Fungi - 107; Plants - 80; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT2G40510.1p  transcript_id AT2G40510.1  protein_id AT2G40510.1p  transcript_id AT2G40510.1  
At2g40520	chr2:016923541	0.0	W/16923541-16923765,16923884-16924063,16924165-16924257,16924341-16924523,16924598-16924700,16924779-16924952,16925034-16925482,16925574-16925675	AT2G40520.1  CDS  gene_syn T2P4.13, T2P4_13  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleotidyltransferase activity|GO:0016779||ISS  product nucleotidyltransferase family protein  note nucleotidyltransferase family protein; FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Nucleotidyltransferase (InterPro:IPR002934); BEST Arabidopsis thaliana protein match is: nucleotidyltransferase family protein (TAIR:AT3G56320.1); Has 221 Blast hits to 211 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 60; Fungi - 43; Plants - 86; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT2G40520.1p  transcript_id AT2G40520.1  protein_id AT2G40520.1p  transcript_id AT2G40520.1  
At2g40520	chr2:016923541	0.0	W/16923541-16923765,16923884-16924063,16924165-16924257,16924341-16924523,16924598-16924700,16924779-16924952,16925034-16925482,16925574-16925675	AT2G40520.2  CDS  gene_syn T2P4.13, T2P4_13  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleotidyltransferase activity|GO:0016779||ISS  product nucleotidyltransferase family protein  note nucleotidyltransferase family protein; FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Nucleotidyltransferase (InterPro:IPR002934); BEST Arabidopsis thaliana protein match is: nucleotidyltransferase family protein (TAIR:AT3G56320.1); Has 221 Blast hits to 211 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 60; Fungi - 43; Plants - 86; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT2G40520.2p  transcript_id AT2G40520.2  protein_id AT2G40520.2p  transcript_id AT2G40520.2  
At2g40520	chr2:016923541	0.0	W/16923541-16923765,16923884-16924063,16924165-16924257,16924341-16924523,16924598-16924700,16924779-16924952,16925034-16925482,16925574-16925675	AT2G40520.3  CDS  gene_syn T2P4.13, T2P4_13  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleotidyltransferase activity|GO:0016779||ISS  product nucleotidyltransferase family protein  note nucleotidyltransferase family protein; FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Nucleotidyltransferase (InterPro:IPR002934); BEST Arabidopsis thaliana protein match is: nucleotidyltransferase family protein (TAIR:AT3G56320.1); Has 221 Blast hits to 211 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 60; Fungi - 43; Plants - 86; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT2G40520.3p  transcript_id AT2G40520.3  protein_id AT2G40520.3p  transcript_id AT2G40520.3  
At2g40520	chr2:016923541	0.0	W/16923541-16923765,16923884-16924063,16924165-16924257,16924341-16924523,16924598-16924700,16924779-16924952,16925034-16925482,16925574-16925675	AT2G40520.4  CDS  gene_syn T2P4.13, T2P4_13  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleotidyltransferase activity|GO:0016779||ISS  product nucleotidyltransferase family protein  note nucleotidyltransferase family protein; FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Nucleotidyltransferase (InterPro:IPR002934); BEST Arabidopsis thaliana protein match is: nucleotidyltransferase family protein (TAIR:AT3G56320.1); Has 221 Blast hits to 211 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 60; Fungi - 43; Plants - 86; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT2G40520.4p  transcript_id AT2G40520.4  protein_id AT2G40520.4p  transcript_id AT2G40520.4  
At2g40530	chr2:016927600	0.0	W/16927600-16927917	AT2G40530.1  CDS  gene_syn T2P4.12, T2P4_12  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: petal, inflorescence meristem, leaf apex, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G40530.1p  transcript_id AT2G40530.1  protein_id AT2G40530.1p  transcript_id AT2G40530.1  
At2g40540	chr2:016931445	0.0	W/16931445-16931489,16931572-16931806,16931894-16932139,16932231-16932284,16932370-16932630,16932711-16932763,16932847-16932964,16933067-16933321,16933399-16934516	AT2G40540.1  CDS  gene_syn ATKT2, ATKT2P, ATKUP2, KT2, KUP2, POTASSIUM TRANSPORTER 2, SHY3, T2P4.11, T2P4_11, TRK2  gene KT2  function putative potassium transporter AtKT2p (AtKT2) mRNA,  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|11500563|NAS  go_process potassium ion transport|GO:0006813|11500563|IC  go_function potassium ion transmembrane transporter activity|GO:0015079|11500563|TAS  go_function potassium ion transmembrane transporter activity|GO:0015079||ISS  product KT2 (POTASSIUM TRANSPORTER 2); potassium ion transmembrane transporter  note POTASSIUM TRANSPORTER 2 (KT2); FUNCTIONS IN: potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Potassium uptake protein, kup (InterPro:IPR018519), K+ potassium transporter (InterPro:IPR003855); BEST Arabidopsis thaliana protein match is: potassium transporter, putative (TAIR:AT5G14880.1); Has 2031 Blast hits to 1985 proteins in 583 species: Archae - 13; Bacteria - 1383; Metazoa - 0; Fungi - 55; Plants - 455; Viruses - 4; Other Eukaryotes - 121 (source: NCBI BLink).  protein_id AT2G40540.1p  transcript_id AT2G40540.1  protein_id AT2G40540.1p  transcript_id AT2G40540.1  
At2g40540	chr2:016931445	0.0	W/16931445-16931489,16931572-16931806,16931894-16932139,16932231-16932284,16932370-16932630,16932711-16932763,16932847-16932964,16933067-16933321,16933399-16934516	AT2G40540.2  CDS  gene_syn ATKT2, ATKT2P, ATKUP2, KT2, KUP2, POTASSIUM TRANSPORTER 2, SHY3, T2P4.11, T2P4_11, TRK2  gene KT2  function putative potassium transporter AtKT2p (AtKT2) mRNA,  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|11500563|NAS  go_process potassium ion transport|GO:0006813|11500563|IC  go_function potassium ion transmembrane transporter activity|GO:0015079|11500563|TAS  go_function potassium ion transmembrane transporter activity|GO:0015079||ISS  product KT2 (POTASSIUM TRANSPORTER 2); potassium ion transmembrane transporter  note POTASSIUM TRANSPORTER 2 (KT2); FUNCTIONS IN: potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Potassium uptake protein, kup (InterPro:IPR018519), K+ potassium transporter (InterPro:IPR003855); BEST Arabidopsis thaliana protein match is: potassium transporter, putative (TAIR:AT5G14880.1); Has 2031 Blast hits to 1985 proteins in 583 species: Archae - 13; Bacteria - 1383; Metazoa - 0; Fungi - 55; Plants - 455; Viruses - 4; Other Eukaryotes - 121 (source: NCBI BLink).  protein_id AT2G40540.2p  transcript_id AT2G40540.2  protein_id AT2G40540.2p  transcript_id AT2G40540.2  
At2g40550	chr2:016934927	0.0	W/16934927-16935094,16935343-16935456,16935545-16935652,16935741-16935872,16935977-16936018,16936205-16936306,16936408-16936644,16936735-16936851,16936942-16937144,16937234-16937369,16937438-16937665,16937776-16937843,16937919-16938033	AT2G40550.1  CDS  gene_syn E2F TARGET GENE 1, ETG1, T2P4.10, T2P4_10  gene ETG1  function Encodes a nuclear localized target of E2Fa-DPa, transcription factors controlling cell cycle progression.  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component nucleus|GO:0005634|18528439|IDA  go_component nuclear replisome|GO:0043601|18528439|IPI  go_process DNA replication|GO:0006260|18528439|IMP  go_function molecular_function|GO:0003674||ND  product ETG1 (E2F TARGET GENE 1)  note E2F TARGET GENE 1 (ETG1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA replication; LOCATED IN: nuclear replisome, nucleus, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 197 Blast hits to 189 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 17; Plants - 22; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT2G40550.1p  transcript_id AT2G40550.1  protein_id AT2G40550.1p  transcript_id AT2G40550.1  
At2g40560	chr2:016938705	0.0	C/16938705-16939616	AT2G40560.1  CDS  gene_syn T2P4.9, T2P4_9  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G40500.1); Has 56589 Blast hits to 56105 proteins in 1634 species: Archae - 61; Bacteria - 4689; Metazoa - 25777; Fungi - 6065; Plants - 8491; Viruses - 220; Other Eukaryotes - 11286 (source: NCBI BLink).  protein_id AT2G40560.1p  transcript_id AT2G40560.1  protein_id AT2G40560.1p  transcript_id AT2G40560.1  
At2g40570	chr2:016941066	0.0	W/16941066-16941369,16941492-16941637,16941718-16942393,16942541-16942641,16942738-16942846,16942923-16942982,16943119-16943288	AT2G40570.1  CDS  gene_syn T2P4.8, T2P4_8  go_function transferase activity, transferring pentosyl groups|GO:0016763||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of translation|GO:0006417||ISS  go_function transferase activity, transferring pentosyl groups|GO:0016763||ISS  product initiator tRNA phosphoribosyl transferase family protein  note initiator tRNA phosphoribosyl transferase family protein; FUNCTIONS IN: transferase activity, transferring pentosyl groups; INVOLVED IN: regulation of translation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Initiator tRNA phosphoribosyl transferase (InterPro:IPR007306), tRNA A64-2&apos;-O-ribosylphosphate transferase, RIT1 (InterPro:IPR016519); Has 128 Blast hits to 118 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 96; Plants - 20; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT2G40570.1p  transcript_id AT2G40570.1  protein_id AT2G40570.1p  transcript_id AT2G40570.1  
At2g40570	chr2:016941066	0.0	W/16941066-16941369,16941492-16941637,16941718-16942393,16942541-16942641,16942738-16942850,16942929-16942977	AT2G40570.2  CDS  gene_syn T2P4.8, T2P4_8  go_function transferase activity, transferring pentosyl groups|GO:0016763||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of translation|GO:0006417||ISS  go_function transferase activity, transferring pentosyl groups|GO:0016763||ISS  product initiator tRNA phosphoribosyl transferase family protein  note initiator tRNA phosphoribosyl transferase family protein; FUNCTIONS IN: transferase activity, transferring pentosyl groups; INVOLVED IN: regulation of translation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Initiator tRNA phosphoribosyl transferase (InterPro:IPR007306), tRNA A64-2 -O-ribosylphosphate transferase, RIT1 (InterPro:IPR016519); Has 118 Blast hits to 114 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 90; Plants - 20; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT2G40570.2p  transcript_id AT2G40570.2  protein_id AT2G40570.2p  transcript_id AT2G40570.2  
At2g40580	chr2:016943964	0.0	W/16943964-16944899	AT2G40580.1  CDS  gene_syn T2P4.7, T2P4_7  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G40560.1); Has 50592 Blast hits to 50028 proteins in 1960 species: Archae - 36; Bacteria - 3450; Metazoa - 23685; Fungi - 5940; Plants - 6196; Viruses - 264; Other Eukaryotes - 11021 (source: NCBI BLink).  protein_id AT2G40580.1p  transcript_id AT2G40580.1  protein_id AT2G40580.1p  transcript_id AT2G40580.1  
At2g40590	chr2:016946343	0.0	C/16946343-16946345,16946167-16946259,16945984-16946068,16945728-16945861,16945215-16945295	AT2G40590.1  CDS  gene_syn T2P4.6, T2P4_6  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S26 (RPS26B)  note 40S ribosomal protein S26 (RPS26B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, ribosome; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Ribosomal protein S26e (InterPro:IPR000892); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S26 (RPS26A) (TAIR:AT2G40510.1); Has 605 Blast hits to 605 proteins in 200 species: Archae - 32; Bacteria - 0; Metazoa - 279; Fungi - 107; Plants - 80; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT2G40590.1p  transcript_id AT2G40590.1  protein_id AT2G40590.1p  transcript_id AT2G40590.1  
At2g40600	chr2:016948235	0.0	C/16948235-16948537,16947995-16948043,16947803-16947905,16947603-16947698,16947440-16947514,16947178-16947247,16947012-16947089	AT2G40600.1  CDS  gene_syn T2P4.5, T2P4_5  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product appr-1-p processing enzyme family protein  note appr-1-p processing enzyme family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Appr-1-p processing (InterPro:IPR002589); BEST Arabidopsis thaliana protein match is: appr-1-p processing enzyme family protein (TAIR:AT1G69340.1); Has 2324 Blast hits to 2216 proteins in 788 species: Archae - 117; Bacteria - 1020; Metazoa - 576; Fungi - 86; Plants - 56; Viruses - 292; Other Eukaryotes - 177 (source: NCBI BLink).  protein_id AT2G40600.1p  transcript_id AT2G40600.1  protein_id AT2G40600.1p  transcript_id AT2G40600.1  
At2g40610	chr2:016950331	0.0	C/16950331-16950472,16949919-16950231,16949121-16949427	AT2G40610.1  CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN A8, ATEXP8, ATEXPA8, ATHEXP ALPHA 1.11, EXP8, T2P4.4, T2P4_4  gene ATEXPA8  function member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_process syncytium formation|GO:0006949|16942607|IEP  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828||ISS  go_process plant-type cell wall modification during multidimensional cell growth|GO:0009831||ISS  product ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8)  note ARABIDOPSIS THALIANA EXPANSIN A8 (ATEXPA8); INVOLVED IN: syncytium formation, plant-type cell wall modification during multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2) (TAIR:AT5G05290.1); Has 1542 Blast hits to 1541 proteins in 156 species: Archae - 0; Bacteria - 19; Metazoa - 0; Fungi - 34; Plants - 1453; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT2G40610.1p  transcript_id AT2G40610.1  protein_id AT2G40610.1p  transcript_id AT2G40610.1  
At2g40620	chr2:016956412	0.0	C/16956412-16956872,16955486-16955618,16955309-16955393,16954804-16955228	AT2G40620.1  CDS  gene_syn T2P4.3, T2P4_3  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  product bZIP transcription factor family protein  note bZIP transcription factor family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: AtbZIP52 (Arabidopsis thaliana basic leucine zipper 52); DNA binding / transcription factor (TAIR:AT1G06850.1); Has 1256 Blast hits to 1226 proteins in 140 species: Archae - 0; Bacteria - 14; Metazoa - 289; Fungi - 48; Plants - 766; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).  protein_id AT2G40620.1p  transcript_id AT2G40620.1  protein_id AT2G40620.1p  transcript_id AT2G40620.1  
At2g40630	chr2:016958442	0.0	W/16958442-16958501,16958613-16958700,16958822-16959655,16959773-16959883,16960158-16960220,16960314-16960543,16960644-16960747,16960825-16960942	AT2G40630.1  CDS  gene_syn T2P4.2, T2P4_2  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP030365 (InterPro:IPR016953); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05240.1); Has 101 Blast hits to 95 proteins in 44 species: Archae - 0; Bacteria - 32; Metazoa - 24; Fungi - 6; Plants - 20; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT2G40630.1p  transcript_id AT2G40630.1  protein_id AT2G40630.1p  transcript_id AT2G40630.1  
At2g40640	chr2:016962793	0.0	C/16962793-16963198,16962472-16962697,16962195-16962276,16962037-16962094,16961872-16961960,16961683-16961778,16961488-16961589	AT2G40640.2  CDS  gene_syn T7D17.18, T7D17_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: ubiquitin-protein ligase (TAIR:AT5G05230.1); Has 41 Blast hits to 41 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G40640.2p  transcript_id AT2G40640.2  protein_id AT2G40640.2p  transcript_id AT2G40640.2  
At2g40640	chr2:016962793	0.0	C/16962793-16963198,16962472-16962697,16962195-16962276,16962037-16962094,16961872-16961960,16961683-16961778,16961519-16961589,16961323-16961446	AT2G40640.1  CDS  gene_syn T7D17.18, T7D17_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: ubiquitin-protein ligase (TAIR:AT5G05230.1); Has 41 Blast hits to 41 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G40640.1p  transcript_id AT2G40640.1  protein_id AT2G40640.1p  transcript_id AT2G40640.1  
At2g40640	chr2:016962793	0.0	C/16962793-16963198,16962472-16962697,16962195-16962276,16962037-16962094,16961882-16961960,16961685-16961778	AT2G40640.3  CDS  gene_syn T7D17.18, T7D17_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: ubiquitin-protein ligase (TAIR:AT5G05230.1); Has 40 Blast hits to 40 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G40640.3p  transcript_id AT2G40640.3  protein_id AT2G40640.3p  transcript_id AT2G40640.3  
At2g40650	chr2:016965307	0.0	C/16965307-16965596,16964990-16965111,16964809-16964899,16964598-16964718,16964429-16964502,16963588-16963957	AT2G40650.1  CDS  gene_syn T7D17.17, T7D17_17  go_component cellular_component|GO:0005575||ND  go_process RNA processing|GO:0006396||ISS  go_function binding|GO:0005488||ISS  product pre-mRNA splicing factor PRP38 family protein  note pre-mRNA splicing factor PRP38 family protein; FUNCTIONS IN: binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PRP38 (InterPro:IPR005037); Has 67657 Blast hits to 21471 proteins in 814 species: Archae - 56; Bacteria - 20349; Metazoa - 26407; Fungi - 5687; Plants - 2913; Viruses - 323; Other Eukaryotes - 11922 (source: NCBI BLink).  protein_id AT2G40650.1p  transcript_id AT2G40650.1  protein_id AT2G40650.1p  transcript_id AT2G40650.1  
At2g40660	chr2:016966011	0.0	W/16966011-16966073,16966369-16966467,16966682-16966852,16967007-16967072,16967269-16967334,16967460-16967582,16967675-16967835,16967936-16968026,16968149-16968217,16968321-16968412,16968571-16968634,16968762-16968866	AT2G40660.1  CDS  gene_syn T7D17.16, T7D17_16  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_function tRNA binding|GO:0000049||IEA  go_function tRNA binding|GO:0000049||ISS  product tRNA-binding region domain-containing protein  note tRNA-binding region domain-containing protein; FUNCTIONS IN: tRNA binding; INVOLVED IN: tRNA aminoacylation for protein translation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), tRNA-binding region (InterPro:IPR002547); BEST Arabidopsis thaliana protein match is: methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (TAIR:AT4G13780.1); Has 3620 Blast hits to 3608 proteins in 1164 species: Archae - 158; Bacteria - 2173; Metazoa - 404; Fungi - 148; Plants - 87; Viruses - 1; Other Eukaryotes - 649 (source: NCBI BLink).  protein_id AT2G40660.1p  transcript_id AT2G40660.1  protein_id AT2G40660.1p  transcript_id AT2G40660.1  
At2g40670	chr2:016970258	0.0	W/16970258-16970420,16970502-16970587,16970685-16970762,16970843-16970913,16971024-16971120	AT2G40670.1  CDS  gene_syn ARABIDOPSIS RESPONSE REGULATOR 16, ARR16, RESPONSE REGULATOR 16, RR16, T7D17.15, T7D17_15  gene ARR16  function response regulator 16  go_component cytoplasm|GO:0005737|12354925|IDA  go_process response to cytokinin stimulus|GO:0009735|12354925|IGI  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_function two-component response regulator activity|GO:0000156|11574878|ISS  go_function two-component response regulator activity|GO:0000156|12068096|ISS  go_function two-component response regulator activity|GO:0000156||ISS  go_function transcription regulator activity|GO:0030528|12068096|TAS  product ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16); transcription regulator/ two-component response regulator  note ARABIDOPSIS RESPONSE REGULATOR 16 (ARR16); FUNCTIONS IN: transcription regulator activity, two-component response regulator activity; INVOLVED IN: cytokinin mediated signaling, response to cytokinin stimulus; LOCATED IN: cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver region (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: ARR17 (ARABIDOPSIS RESPONSE REGULATOR 17); transcription regulator/ two-component response regulator (TAIR:AT3G56380.1); Has 14210 Blast hits to 14057 proteins in 1167 species: Archae - 100; Bacteria - 11543; Metazoa - 9; Fungi - 286; Plants - 622; Viruses - 6; Other Eukaryotes - 1644 (source: NCBI BLink).  protein_id AT2G40670.1p  transcript_id AT2G40670.1  protein_id AT2G40670.1p  transcript_id AT2G40670.1  
At2g40680	chr2:016972829	0.0	W/16972829-16973719	AT2G40680.1  mRNA_TE_gene  pseudo  gene_syn T7D17.14, T7D17_14  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G52065.1); similar to hypothetical protein 23.t00046 [Brassica oleracea] (GB:ABD65629.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446)  
At2g40690	chr2:016974107	0.0	W/16974107-16974373,16974448-16974584,16974669-16974774,16974857-16975058,16975165-16975252,16975463-16975610,16975742-16975891,16975985-16976134,16976227-16976241	AT2G40690.1  CDS  gene_syn GLY1, SFD1, SUPPRESSOR OF FATTY ACID DESATURASE DEFICIENCY 1, T7D17.13, T7D17_13  gene GLY1  function Encodes a putative dihydroxyacetone phosphate (DHAP) reductase involved in glycerol-3-phosphate supply within the chloroplast for synthesis of glycerolipids. Mutants have reduced levels of hexadecatrienoic acid, which is rescued by exogenous glycerol-3-phosphate. This gene appears to be involved in the flux of fatty acids in the prokaryotic glyerolipid biosynthesis pathway.  go_component cytoplasm|GO:0005737||IEA  go_component glycerol-3-phosphate dehydrogenase complex|GO:0009331||IEA  go_component glycerol-3-phosphate dehydrogenase complex|GO:0009331||ISS  go_process glycerol-3-phosphate metabolic process|GO:0006072||ISS  go_process systemic acquired resistance|GO:0009627|14729910|IMP  go_process glycerolipid biosynthetic process|GO:0045017|9662534|IMP  go_process glycerolipid metabolic process|GO:0046486|14729910|IMP  go_function glycerol-3-phosphate dehydrogenase (NAD+) activity|GO:0004367|14729910|IGI  go_function glycerol-3-phosphate dehydrogenase (NAD+) activity|GO:0004367||ISS  go_function glycerol-3-phosphate dehydrogenase (NAD+) activity|GO:0004367||TAS  product GLY1; glycerol-3-phosphate dehydrogenase (NAD+)  note GLY1; FUNCTIONS IN: glycerol-3-phosphate dehydrogenase (NAD+) activity; INVOLVED IN: systemic acquired resistance, glycerol-3-phosphate metabolic process, glycerolipid metabolic process, glycerolipid biosynthetic process; LOCATED IN: glycerol-3-phosphate dehydrogenase complex, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), NAD(P)-binding (InterPro:IPR016040), NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal (InterPro:IPR006109), NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal (InterPro:IPR011128), NAD-dependent glycerol-3-phosphate dehydrogenase (InterPro:IPR006168); BEST Arabidopsis thaliana protein match is: glycerol-3-phosphate dehydrogenase (NAD+) / GPDH (TAIR:AT5G40610.1); Has 5910 Blast hits to 5909 proteins in 1603 species: Archae - 12; Bacteria - 2827; Metazoa - 547; Fungi - 204; Plants - 95; Viruses - 0; Other Eukaryotes - 2225 (source: NCBI BLink).  protein_id AT2G40690.1p  transcript_id AT2G40690.1  protein_id AT2G40690.1p  transcript_id AT2G40690.1  
At2g40700	chr2:016976783	0.0	W/16976783-16976918,16977008-16977080,16977182-16977291,16977376-16977519,16977581-16977689,16977772-16978124,16978200-16978273,16978367-16978674,16978774-16979020,16979117-16979392	AT2G40700.1  CDS  gene_syn T7D17.12, T7D17_12  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD/DEAH box helicase, putative (RH17)  note DEAD/DEAH box helicase, putative (RH17); FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (TAIR:AT5G65900.1); Has 26770 Blast hits to 25070 proteins in 1684 species: Archae - 453; Bacteria - 10406; Metazoa - 5242; Fungi - 3151; Plants - 1377; Viruses - 5; Other Eukaryotes - 6136 (source: NCBI BLink).  protein_id AT2G40700.1p  transcript_id AT2G40700.1  protein_id AT2G40700.1p  transcript_id AT2G40700.1  
At2g40710	chr2:016981087	0.0	C/16981087-16981368	AT2G40710.1  CDS  gene_syn T7D17.11, T7D17_11  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Hly-III related (InterPro:IPR004254); BEST Arabidopsis thaliana protein match is: HHP4 (heptahelical protein 4); receptor (TAIR:AT4G37680.1); Has 973 Blast hits to 973 proteins in 145 species: Archae - 0; Bacteria - 8; Metazoa - 627; Fungi - 177; Plants - 97; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT2G40710.1p  transcript_id AT2G40710.1  protein_id AT2G40710.1p  transcript_id AT2G40710.1  
At2g40711	chr2:016981927	0.0	C/16981927-16982244	AT2G40711.1  CDS  product unknown protein  note unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G40711.1p  transcript_id AT2G40711.1  protein_id AT2G40711.1p  transcript_id AT2G40711.1  
At2g40720	chr2:016987269	0.0	W/16987269-16989851	AT2G40720.1  CDS  gene_syn T7D17.10, T7D17_10  go_component cellular_component|GO:0005575||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G21300.1); Has 18557 Blast hits to 5021 proteins in 165 species: Archae - 0; Bacteria - 2; Metazoa - 97; Fungi - 60; Plants - 18102; Viruses - 0; Other Eukaryotes - 296 (source: NCBI BLink).  protein_id AT2G40720.1p  transcript_id AT2G40720.1  protein_id AT2G40720.1p  transcript_id AT2G40720.1  
At2g40730	chr2:016995947	0.0	C/16995947-16996072,16995389-16995487,16994843-16994994,16994613-16994685,16994389-16994511,16994038-16994146,16993846-16993925,16993519-16993600,16993176-16993315,16992965-16993075,16992743-16992859,16992541-16992630,16992304-16992357,16991904-16991978,16991720-16991795,16991483-16991582,16991324-16991393,16991145-16991212,16990935-16991047,16990455-16990706,16990083-16990369	AT2G40730.1  CDS  gene_syn T7D17.9, T7D17_9  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function binding|GO:0005488||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  product HEAT repeat-containing protein  note HEAT repeat-containing protein; FUNCTIONS IN: protein serine/threonine kinase activity, binding, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Protein kinase, core (InterPro:IPR000719), Armadillo-like helical (InterPro:IPR011989), Serine/threonine protein kinase (InterPro:IPR002290), Armadillo-type fold (InterPro:IPR016024), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G71410.1); Has 4040 Blast hits to 1570 proteins in 266 species: Archae - 0; Bacteria - 246; Metazoa - 704; Fungi - 415; Plants - 94; Viruses - 18; Other Eukaryotes - 2563 (source: NCBI BLink).  protein_id AT2G40730.1p  transcript_id AT2G40730.1  protein_id AT2G40730.1p  transcript_id AT2G40730.1  
At2g40740	chr2:016997177	0.0	W/16997177-16997622,16998377-16998508,16998976-16999276	AT2G40740.1  CDS  gene_syn AtWRKY55, T7D17.8, T7D17_8, WRKY55  gene WRKY55  function member of WRKY Transcription Factor; Group III  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY55; transcription factor  note WRKY55; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: stem, sperm cell, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY53; DNA binding / protein binding / transcription activator/ transcription factor (TAIR:AT4G23810.1); Has 1919 Blast hits to 1643 proteins in 103 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1910; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G40740.1p  transcript_id AT2G40740.1  protein_id AT2G40740.1p  transcript_id AT2G40740.1  
At2g40740	chr2:016997177	0.0	W/16997177-16997622,16998976-16999276	AT2G40740.2  CDS  gene_syn AtWRKY55, T7D17.8, T7D17_8, WRKY55  gene WRKY55  function member of WRKY Transcription Factor; Group III  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY55; transcription factor  note WRKY55; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: stem, sperm cell, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY53; DNA binding / protein binding / transcription activator/ transcription factor (TAIR:AT4G23810.1); Has 587 Blast hits to 578 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 587; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G40740.2p  transcript_id AT2G40740.2  protein_id AT2G40740.2p  transcript_id AT2G40740.2  
At2g40750	chr2:017001942	0.0	C/17001942-17002354,17001352-17001453,17000636-17001161	AT2G40750.1  CDS  gene_syn AtWRKY54, T7D17.7, T7D17_7, WRKY54  gene WRKY54  function member of WRKY Transcription Factor; Group III  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_process regulation of defense response|GO:0031347|17096590|IMP  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|17096590|IMP  go_function transcription factor activity|GO:0003700||ISS  product WRKY54; transcription factor  note WRKY54; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of defense response; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY70; transcription factor/ transcription repressor (TAIR:AT3G56400.1); Has 1867 Blast hits to 1599 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1858; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G40750.1p  transcript_id AT2G40750.1  protein_id AT2G40750.1p  transcript_id AT2G40750.1  
At2g40745	chr2:017008264	0.0	C/17008264-17008677	AT2G40745.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G39975.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G40745.1p  transcript_id AT2G40745.1  protein_id AT2G40745.1p  transcript_id AT2G40745.1  
At2g40760	chr2:017010050	0.0	W/17010050-17010445,17010606-17010857,17010941-17011039,17011214-17011510,17011588-17011968	AT2G40760.1  CDS  gene_syn T7D17.1  go_process aging|GO:0007568||ISS  go_function molecular_function|GO:0003674||ND  product rhodanese-like domain-containing protein  note rhodanese-like domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09280.1); Has 4397 Blast hits to 4396 proteins in 858 species: Archae - 2; Bacteria - 1721; Metazoa - 51; Fungi - 2; Plants - 52; Viruses - 0; Other Eukaryotes - 2569 (source: NCBI BLink).  protein_id AT2G40760.1p  transcript_id AT2G40760.1  protein_id AT2G40760.1p  transcript_id AT2G40760.1  
At2g40765	chr2:017012301	0.0	W/17012301-17012417,17013025-17013081	AT2G40765.1  CDS  go_component mitochondrion|GO:0005739|15276431|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial respiratory chain complex III|GO:0005750|18189341|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, mitochondrial respiratory chain complex III; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G40765.1p  transcript_id AT2G40765.1  protein_id AT2G40765.1p  transcript_id AT2G40765.1  
At2g40770	chr2:017020501	0.0	C/17020501-17021315,17020210-17020416,17019988-17020049,17019297-17019771,17018954-17019154,17018433-17018688,17018127-17018358,17017828-17017988,17017222-17017761,17016864-17017030,17016317-17016533,17016020-17016226,17015687-17015803,17015339-17015581,17014833-17015034,17014500-17014693,17014277-17014428,17013928-17014183,17013535-17013825	AT2G40770.1  CDS  gene_syn T7D17.5, T7D17_5  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function zinc ion binding|GO:0008270||IEA  product ATP binding / DNA binding / helicase/ nucleic acid binding / protein binding / zinc ion binding  note ATP binding / DNA binding / helicase/ nucleic acid binding / protein binding / zinc ion binding; FUNCTIONS IN: in 6 functions; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), SNF2-related (InterPro:IPR000330), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: RAD5; ATP binding / ATP-dependent helicase/ DNA binding / helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding / protein binding / zinc ion binding (TAIR:AT5G22750.1); Has 13590 Blast hits to 8685 proteins in 812 species: Archae - 59; Bacteria - 2742; Metazoa - 4195; Fungi - 3438; Plants - 951; Viruses - 102; Other Eukaryotes - 2103 (source: NCBI BLink).  protein_id AT2G40770.1p  transcript_id AT2G40770.1  protein_id AT2G40770.1p  transcript_id AT2G40770.1  
At2g40780	chr2:017021875	0.0	W/17021875-17021988,17022151-17022226,17022337-17022463,17022550-17022748	AT2G40780.1  CDS  gene_syn T7D17.4, T7D17_4  go_process translational initiation|GO:0006413||IEA  go_function RNA binding|GO:0003723||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_component cellular_component|GO:0005575||ND  product RNA binding / translation initiation factor  note RNA binding / translation initiation factor; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), S1, IF1 type (InterPro:IPR006196), Translation initiation factor 1A (eIF-1A) (InterPro:IPR001253); BEST Arabidopsis thaliana protein match is: F-box protein-related (TAIR:AT2G40910.1); Has 225 Blast hits to 225 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 148; Fungi - 48; Plants - 24; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT2G40780.1p  transcript_id AT2G40780.1  protein_id AT2G40780.1p  transcript_id AT2G40780.1  
At2g40780	chr2:017022154	0.0	W/17022154-17022226,17022337-17022463,17022550-17022748	AT2G40780.2  CDS  gene_syn T7D17.4, T7D17_4  go_process translational initiation|GO:0006413||IEA  go_function RNA binding|GO:0003723||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_component cellular_component|GO:0005575||ND  product RNA binding / translation initiation factor  note RNA binding / translation initiation factor; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), S1, IF1 type (InterPro:IPR006196), Translation initiation factor 1A (eIF-1A) (InterPro:IPR001253); Has 169 Blast hits to 169 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 117; Fungi - 26; Plants - 21; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT2G40780.2p  transcript_id AT2G40780.2  protein_id AT2G40780.2p  transcript_id AT2G40780.2  
At2g40790	chr2:017023877	0.0	C/17023877-17023915,17023578-17023730,17023358-17023480,17023109-17023258	AT2G40790.1  CDS  gene_syn ATCXXS2, C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1, T7D17.3, T7D17_3  gene ATCXXS2  function Encodes a monocysteinic thioredoxin, thioredoxin in which the second cysteine of the redox site is replaced by a serine, with low disulfide reductase but efficient disulfide isomerase activity. It contains a large N-terminal extension with respect to the dicysteinic thioredoxins that is enriched with 8 cysteines and positively charged residues.  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cytosol|GO:0005829|18384502|IDA  go_process protein thiol-disulfide exchange|GO:0006467|18384502|IDA  go_process protein amino acid deglutathionylation|GO:0080058|18384502|IDA  go_function protein disulfide isomerase activity|GO:0003756|18384502|IDA  product ATCXXS2 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1); protein disulfide isomerase  note C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1 (ATCXXS2); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: N-terminal protein myristoylation, protein thiol-disulfide exchange, protein amino acid deglutathionylation; LOCATED IN: cytosol; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56420.1); Has 6458 Blast hits to 6452 proteins in 1378 species: Archae - 107; Bacteria - 2732; Metazoa - 918; Fungi - 449; Plants - 637; Viruses - 3; Other Eukaryotes - 1612 (source: NCBI BLink).  protein_id AT2G40790.1p  transcript_id AT2G40790.1  protein_id AT2G40790.1p  transcript_id AT2G40790.1  
At2g40800	chr2:017026176	0.0	C/17026176-17026769,17025464-17025736,17024653-17024919	AT2G40800.1  CDS  gene_syn T7D17.2, T7D17_2  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial import inner membrane translocase, subunit Tim21 (InterPro:IPR013261); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56430.1); Has 21 Blast hits to 21 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G40800.1p  transcript_id AT2G40800.1  protein_id AT2G40800.1p  transcript_id AT2G40800.1  
At2g40802	chr2:017028304	0.0	C/17028304-17028405	AT2G40802.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G40802.1p  transcript_id AT2G40802.1  protein_id AT2G40802.1p  transcript_id AT2G40802.1  
At2g40805	chr2:017029701	0.0	W/17029701-17029899	AT2G40805.1  miRNA  gene_syn MICRORNA319C, MIR319C  gene MIR319C  function Encodes a microRNA that targets several TCP family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGGACUGAAGGGAGCUCCUU  product MIR319C (MICRORNA319C); miRNA  transcript_id AT2G40805.1  
At2g40810	chr2:017032686	0.0	W/17032686-17033402,17033475-17033724,17033981-17034104,17034248-17034338	AT2G40810.1  CDS  gene_syn AtATG18c, T20B5.1, T20B5_1  gene AtATG18c  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product AtATG18c  note AtATG18c; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: AtATG18d (TAIR:AT3G56440.1); Has 1082 Blast hits to 1038 proteins in 176 species: Archae - 0; Bacteria - 32; Metazoa - 492; Fungi - 307; Plants - 112; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).  protein_id AT2G40810.1p  transcript_id AT2G40810.1  protein_id AT2G40810.1p  transcript_id AT2G40810.1  
At2g40810	chr2:017032686	0.0	W/17032686-17033402,17033475-17033724,17033981-17034104,17034248-17034338	AT2G40810.2  CDS  gene_syn AtATG18c, T20B5.1, T20B5_1  gene AtATG18c  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product AtATG18c  note AtATG18c; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: AtATG18d (TAIR:AT3G56440.1); Has 1082 Blast hits to 1038 proteins in 176 species: Archae - 0; Bacteria - 32; Metazoa - 492; Fungi - 307; Plants - 112; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).  protein_id AT2G40810.2p  transcript_id AT2G40810.2  protein_id AT2G40810.2p  transcript_id AT2G40810.2  
At2g40815	chr2:017035642	0.0	C/17035642-17036110,17034736-17035370	AT2G40815.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: C2 calcium-dependent membrane targeting (InterPro:IPR000008).  protein_id AT2G40815.1p  transcript_id AT2G40815.1  protein_id AT2G40815.1p  transcript_id AT2G40815.1  
At2g40820	chr2:017039184	0.0	C/17039184-17039474,17038946-17039074,17038733-17038825,17038492-17038638,17038322-17038390,17038105-17038188,17037841-17038021,17037605-17037721,17037436-17037494,17037203-17037334,17036946-17037095,17036768-17036794	AT2G40820.1  CDS  gene_syn T20B5.2, T20B5_2  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT3G56480.1); Has 2697 Blast hits to 2260 proteins in 261 species: Archae - 3; Bacteria - 96; Metazoa - 995; Fungi - 432; Plants - 786; Viruses - 39; Other Eukaryotes - 346 (source: NCBI BLink).  protein_id AT2G40820.1p  transcript_id AT2G40820.1  protein_id AT2G40820.1p  transcript_id AT2G40820.1  
At2g40830	chr2:017043642	0.0	W/17043642-17044628	AT2G40830.1  CDS  gene_syn RHC1A, RING-H2 FINGER PROTEIN RHC1A, T20B5.3, T20B5_3  gene RHC1A  function Encodes a putative RING-H2 finger protein RHC1a.  go_component cell wall|GO:0005618|16287169|IDA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product RHC1A; protein binding / zinc ion binding  note RHC1A; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G56580.3); Has 7260 Blast hits to 7044 proteins in 220 species: Archae - 0; Bacteria - 14; Metazoa - 2628; Fungi - 636; Plants - 2717; Viruses - 18; Other Eukaryotes - 1247 (source: NCBI BLink).  protein_id AT2G40830.1p  transcript_id AT2G40830.1  protein_id AT2G40830.1p  transcript_id AT2G40830.1  
At2g40830	chr2:017043642	0.0	W/17043642-17044628	AT2G40830.2  CDS  gene_syn RHC1A, RING-H2 FINGER PROTEIN RHC1A, T20B5.3, T20B5_3  gene RHC1A  function Encodes a putative RING-H2 finger protein RHC1a.  go_component cell wall|GO:0005618|16287169|IDA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product RHC1A; protein binding / zinc ion binding  note RHC1A; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G56580.3); Has 7260 Blast hits to 7044 proteins in 220 species: Archae - 0; Bacteria - 14; Metazoa - 2628; Fungi - 636; Plants - 2717; Viruses - 18; Other Eukaryotes - 1247 (source: NCBI BLink).  protein_id AT2G40830.2p  transcript_id AT2G40830.2  protein_id AT2G40830.2p  transcript_id AT2G40830.2  
At2g40830	chr2:017043642	0.0	W/17043642-17044628	AT2G40830.3  CDS  gene_syn RHC1A, RING-H2 FINGER PROTEIN RHC1A, T20B5.3, T20B5_3  gene RHC1A  function Encodes a putative RING-H2 finger protein RHC1a.  go_component cell wall|GO:0005618|16287169|IDA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product RHC1A; protein binding / zinc ion binding  note RHC1A; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G56580.3); Has 7260 Blast hits to 7044 proteins in 220 species: Archae - 0; Bacteria - 14; Metazoa - 2628; Fungi - 636; Plants - 2717; Viruses - 18; Other Eukaryotes - 1247 (source: NCBI BLink).  protein_id AT2G40830.3p  transcript_id AT2G40830.3  protein_id AT2G40830.3p  transcript_id AT2G40830.3  
At2g40840	chr2:017045368	0.0	W/17045368-17045730,17045824-17045941,17046052-17046107,17046208-17046335,17046439-17046565,17046648-17046844,17047168-17047246,17047324-17047362,17047579-17047698,17047821-17047922,17048041-17048124,17048225-17048467,17048543-17048668,17048747-17048821,17048936-17049007,17049148-17049267,17049398-17049495,17049669-17049828,17049917-17050015,17050140-17050337,17050438-17050531,17050610-17050779	AT2G40840.1  CDS  gene_syn DISPROPORTIONATING ENZYME 2, DPE2, T20B5.4, T20B5_4  gene DPE2  function Encodes a cytosolic protein with transglucosidase and amylomaltase activity. It is an essential component of the pathway from starch to sucrose and cellular metabolism in leaves at night. The protein binds to heteroglycans and utilizes glucose, mannose and xylose as acceptors. Fucose and galactose can also act as acceptors but less efficiently than the previous three. It was also was also recently reported to act on maltodextrins. On the other hand, arabinose and fructose were not efficiently used. Its role probably includes metabolizing maltose exported from the chloroplast. Studies using maltose extracted from the double mutant be2-1 be3-2 showed that this enzyme is preferentially active of & 946;-maltose.  go_component cytosol|GO:0005829|14996213|IDA  go_process maltose metabolic process|GO:0000023|14593480|IMP  go_process maltose catabolic process|GO:0000025|16980562|IDA  go_process polysaccharide metabolic process|GO:0005976|16098110|TAS  go_process starch catabolic process|GO:0005983|15862090|TAS  go_process circadian rhythm|GO:0007623|16297066|IEP  go_function 4-alpha-glucanotransferase activity|GO:0004134|16640603|IDA  go_function 4-alpha-glucanotransferase activity|GO:0004134|16980562|IDA  go_function 4-alpha-glucanotransferase activity|GO:0004134|16980562|IGI  go_function 4-alpha-glucanotransferase activity|GO:0004134||ISS  go_function heteroglycan binding|GO:0010297|16640603|IDA  product DPE2 (DISPROPORTIONATING ENZYME 2); 4-alpha-glucanotransferase/ heteroglycan binding  note DISPROPORTIONATING ENZYME 2 (DPE2); FUNCTIONS IN: 4-alpha-glucanotransferase activity, heteroglycan binding; INVOLVED IN: polysaccharide metabolic process, circadian rhythm, starch catabolic process, maltose metabolic process, maltose catabolic process; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin-like fold (InterPro:IPR013783), Carbohydrate-binding-like fold (InterPro:IPR013784), Glycoside hydrolase, family 77 (InterPro:IPR003385), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, carbohydrate-binding (InterPro:IPR002044), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: DPE1 (DISPROPORTIONATING ENZYME); 4-alpha-glucanotransferase/ catalytic/ cation binding (TAIR:AT5G64860.1); Has 2550 Blast hits to 2118 proteins in 798 species: Archae - 33; Bacteria - 1907; Metazoa - 0; Fungi - 49; Plants - 95; Viruses - 0; Other Eukaryotes - 466 (source: NCBI BLink).  protein_id AT2G40840.1p  transcript_id AT2G40840.1  protein_id AT2G40840.1p  transcript_id AT2G40840.1  
At2g40850	chr2:017051575	0.0	W/17051575-17053260	AT2G40850.1  CDS  gene_syn T20B5.5, T20B5_5  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function inositol or phosphatidylinositol kinase activity|GO:0004428||ISS  product phosphatidylinositol 3- and 4-kinase family protein  note phosphatidylinositol 3- and 4-kinase family protein; FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: tapetum, microspore; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3- and 4-kinase, catalytic (InterPro:IPR000403); BEST Arabidopsis thaliana protein match is: inositol or phosphatidylinositol kinase/ phosphotransferase, alcohol group as acceptor (TAIR:AT3G56600.1); Has 343 Blast hits to 338 proteins in 100 species: Archae - 0; Bacteria - 2; Metazoa - 105; Fungi - 40; Plants - 128; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT2G40850.1p  transcript_id AT2G40850.1  protein_id AT2G40850.1p  transcript_id AT2G40850.1  
At2g40860	chr2:017056994	0.0	C/17056994-17057108,17056784-17056901,17056529-17056695,17056323-17056390,17055972-17056195,17055764-17055815,17054944-17055493,17054745-17054811,17054449-17054668,17054243-17054347,17054030-17054125,17053747-17053941	AT2G40860.1  CDS  gene_syn T20B5.6, T20B5_6  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein kinase family protein / protein phosphatase 2C ( PP2C) family protein  note protein kinase family protein / protein phosphatase 2C ( PP2C) family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein serine/threonine phosphatase activity, protein kinase activity, catalytic activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C, N-terminal (InterPro:IPR014045), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: WIN2 (HOPW1-1-INTERACTING 2); protein serine/threonine phosphatase (TAIR:AT4G31750.1); Has 94844 Blast hits to 93802 proteins in 3192 species: Archae - 68; Bacteria - 8564; Metazoa - 40776; Fungi - 7878; Plants - 19834; Viruses - 600; Other Eukaryotes - 17124 (source: NCBI BLink).  protein_id AT2G40860.1p  transcript_id AT2G40860.1  protein_id AT2G40860.1p  transcript_id AT2G40860.1  
At2g40880	chr2:017057463	0.0	W/17057463-17057657,17057748-17057930	AT2G40880.1  CDS  gene_syn ATCYSA, CYSTATIN A, FL3-27, T20B5.8, T20B5_8  gene ATCYSA  function Encodes a protein with cysteine proteinase inhibitor activity. Overexpression increases tolerance to abiotic stressors (i.e.salt,osmitic, cold stress).  go_component endomembrane system|GO:0012505||IEA  go_process response to abiotic stimulus|GO:0009628|18523728|IMP  go_function cysteine-type endopeptidase inhibitor activity|GO:0004869|18523728|IDA  go_function cysteine-type endopeptidase inhibitor activity|GO:0004869||ISS  product ATCYSA (CYSTATIN A); cysteine-type endopeptidase inhibitor  note CYSTATIN A (ATCYSA); FUNCTIONS IN: cysteine-type endopeptidase inhibitor activity; INVOLVED IN: response to abiotic stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I25, cystatin, conserved site (InterPro:IPR018073), Proteinase inhibitor I25, cystatin (InterPro:IPR000010); BEST Arabidopsis thaliana protein match is: cysteine protease inhibitor, putative / cystatin, putative (TAIR:AT3G12490.2); Has 478 Blast hits to 456 proteins in 83 species: Archae - 0; Bacteria - 2; Metazoa - 23; Fungi - 0; Plants - 448; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT2G40880.1p  transcript_id AT2G40880.1  protein_id AT2G40880.1p  transcript_id AT2G40880.1  
At2g40890	chr2:017060049	0.0	C/17060049-17060532,17059020-17059417,17058291-17058935	AT2G40890.1  CDS  gene_syn CYP98A3, T20B5.9, T20B5_9, cytochrome P450, family 98, subfamily A, polypeptide 3  gene CYP98A3  function encodes coumarate 3-hydroxylase (C3H), a P450-dependent monooxygenase. Involved in lignin biosynthesis and flavonoid biosynthesis. Also affects the biosynthesis of coumarins such as scopoletin and scopolin as a branching-out-pathway from the phenylpropanoid acid level.  go_component mitochondrion|GO:0005739|15276431|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component microsome|GO:0005792|11429408|IDA  go_process phenylpropanoid biosynthetic process|GO:0009699|11429408|IMP  go_process phenylpropanoid biosynthetic process|GO:0009699|16377748|IMP  go_process coumarin biosynthetic process|GO:0009805|16405932|IMP  go_process lignin biosynthetic process|GO:0009809|11891223|TAS  go_process lignin biosynthetic process|GO:0009809|16377748|IMP  go_process flavonoid biosynthetic process|GO:0009813|16377748|IMP  go_function monooxygenase activity|GO:0004497|11429408|IDA  go_function p-coumarate 3-hydroxylase activity|GO:0046409|11429408|IDA  go_function p-coumarate 3-hydroxylase activity|GO:0046409|16377748|IMP  product CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3); monooxygenase/ p-coumarate 3-hydroxylase  note cytochrome P450, family 98, subfamily A, polypeptide 3 (CYP98A3); FUNCTIONS IN: monooxygenase activity, p-coumarate 3-hydroxylase activity; INVOLVED IN: coumarin biosynthetic process, lignin biosynthetic process, phenylpropanoid biosynthetic process, flavonoid biosynthetic process; LOCATED IN: mitochondrion, endoplasmic reticulum, plasma membrane, microsome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP98A9; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G74550.1); Has 23887 Blast hits to 23748 proteins in 1284 species: Archae - 21; Bacteria - 2263; Metazoa - 10403; Fungi - 4471; Plants - 5771; Viruses - 3; Other Eukaryotes - 955 (source: NCBI BLink).  protein_id AT2G40890.1p  transcript_id AT2G40890.1  protein_id AT2G40890.1p  transcript_id AT2G40890.1  
At2g40900	chr2:017065327	0.0	C/17065327-17065514,17065170-17065232,17064967-17065083,17064542-17064767,17064022-17064180,17063774-17063925,17063396-17063675	AT2G40900.1  CDS  gene_syn T20B5.10, T20B5_10  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  product nodulin MtN21 family protein  note nodulin MtN21 family protein; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: integral membrane family protein / nodulin MtN21-related (TAIR:AT3G56620.1); Has 2529 Blast hits to 2517 proteins in 413 species: Archae - 29; Bacteria - 1156; Metazoa - 2; Fungi - 0; Plants - 635; Viruses - 0; Other Eukaryotes - 707 (source: NCBI BLink).  protein_id AT2G40900.1p  transcript_id AT2G40900.1  protein_id AT2G40900.1p  transcript_id AT2G40900.1  
At2g40910	chr2:017071450	0.0	C/17071450-17071501,17071204-17071311,17069938-17071106	AT2G40910.2  CDS  gene_syn T20B5.11, T20B5_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box protein-related  note F-box protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G40920.1); Has 861 Blast hits to 836 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 859; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G40910.2p  transcript_id AT2G40910.2  protein_id AT2G40910.2p  transcript_id AT2G40910.2  
At2g40910	chr2:017071450	0.0	C/17071450-17071554,17071204-17071279,17069938-17071106	AT2G40910.1  CDS  gene_syn T20B5.11, T20B5_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box protein-related  note F-box protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G40920.1); Has 863 Blast hits to 838 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 861; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G40910.1p  transcript_id AT2G40910.1  protein_id AT2G40910.1p  transcript_id AT2G40910.1  
At2g40920	chr2:017072586	0.0	C/17072586-17073719	AT2G40920.2  CDS  gene_syn T20B5.12, T20B5_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box protein-related (TAIR:AT2G40910.2); Has 590 Blast hits to 578 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 590; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G40920.2p  transcript_id AT2G40920.2  protein_id AT2G40920.2p  transcript_id AT2G40920.2  
At2g40920	chr2:017073908	0.0	C/17073908-17074012,17072586-17073791	AT2G40920.1  CDS  gene_syn T20B5.12, T20B5_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box protein-related (TAIR:AT2G40910.1); Has 654 Blast hits to 630 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 653; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G40920.1p  transcript_id AT2G40920.1  protein_id AT2G40920.1p  transcript_id AT2G40920.1  
At2g40925	chr2:017074905	0.0	C/17074905-17076116	AT2G40925.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box protein-related (TAIR:AT2G40910.2); Has 827 Blast hits to 814 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 825; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G40925.1p  transcript_id AT2G40925.1  protein_id AT2G40925.1p  transcript_id AT2G40925.1  
At2g40930	chr2:017082053	0.0	C/17082053-17082192,17081480-17081734,17080961-17081105,17080800-17080859,17080597-17080692,17080011-17080400,17079478-17079618,17079228-17079398,17078481-17078738,17078251-17078399,17077439-17077999,17076941-17077214,17076714-17076848	AT2G40930.1  CDS  gene_syn ATUBP5, PDE323, PIGMENT DEFECTIVE EMBRYO 323, T20B5.13, T20B5_13, UBIQUITIN-SPECIFIC PROTEASE 5, UBP5  gene UBP5  function Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation.  go_component nucleus|GO:0005634|10898935|ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10898935|TAS  go_function ubiquitin-specific protease activity|GO:0004843|10898935|IDA  go_function ubiquitin-specific protease activity|GO:0004843||ISS  product UBP5 (UBIQUITIN-SPECIFIC PROTEASE 5); ubiquitin-specific protease  note UBIQUITIN-SPECIFIC PROTEASE 5 (UBP5); FUNCTIONS IN: ubiquitin-specific protease activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin-specific peptidase, DUSP domain (InterPro:IPR006615), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Ubiquitin carboxyl-terminal hydrolase, N-terminal region 2 (InterPro:IPR010460); BEST Arabidopsis thaliana protein match is: UBP9 (UBIQUITIN-SPECIFIC PROTEASE 9); cysteine-type endopeptidase/ ubiquitin thiolesterase (TAIR:AT4G10570.1); Has 8328 Blast hits to 5661 proteins in 190 species: Archae - 0; Bacteria - 4; Metazoa - 4730; Fungi - 1179; Plants - 696; Viruses - 8; Other Eukaryotes - 1711 (source: NCBI BLink).  protein_id AT2G40930.1p  transcript_id AT2G40930.1  protein_id AT2G40930.1p  transcript_id AT2G40930.1  
At2g40935	chr2:017083199	0.0	W/17083199-17083346,17083737-17083963,17084052-17084216	AT2G40935.3  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18470.1); Has 330 Blast hits to 329 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 8; Plants - 313; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G40935.3p  transcript_id AT2G40935.3  protein_id AT2G40935.3p  transcript_id AT2G40935.3  
At2g40935	chr2:017083199	0.0	W/17083199-17083379,17083737-17083963,17084052-17084216	AT2G40935.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18470.1); Has 527 Blast hits to 526 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 96; Fungi - 56; Plants - 359; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT2G40935.1p  transcript_id AT2G40935.1  protein_id AT2G40935.1p  transcript_id AT2G40935.1  
At2g40935	chr2:017083336	0.0	W/17083336-17083444,17083737-17083963,17084052-17084216	AT2G40935.2  CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18470.1); Has 324 Blast hits to 323 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 6; Plants - 309; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G40935.2p  transcript_id AT2G40935.2  protein_id AT2G40935.2p  transcript_id AT2G40935.2  
At2g40940	chr2:017085914	0.0	C/17085914-17086819,17085450-17085818,17085103-17085369,17084897-17085024,17084635-17084806	AT2G40940.1  CDS  gene_syn ERS, ERS1, ETHYLENE RESPONSE SENSOR, ETHYLENE RESPONSE SENSOR 1, T20B5.14, T20B5_14  gene ERS1  function Ethylene receptor, subfamily 1. Has histidine kinase activity.  go_component membrane|GO:0016020||IEA  go_process negative regulation of ethylene mediated signaling pathway|GO:0010105|7569898|TAS  go_function protein histidine kinase activity|GO:0004673|15703053|TAS  go_function protein histidine kinase activity|GO:0004673||ISS  go_function receptor activity|GO:0004872|7569898|TAS  go_function ethylene binding|GO:0051740|15703053|IDA  product ERS1 (ETHYLENE RESPONSE SENSOR 1); ethylene binding / protein histidine kinase/ receptor  note ETHYLENE RESPONSE SENSOR 1 (ERS1); FUNCTIONS IN: ethylene binding, receptor activity, protein histidine kinase activity; INVOLVED IN: negative regulation of ethylene mediated signaling pathway; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), Signal transduction histidine kinase, core (InterPro:IPR005467), Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region (InterPro:IPR003661), ATP-binding region, ATPase-like (InterPro:IPR003594), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: ETR1 (ETHYLENE RESPONSE 1); ethylene binding / protein histidine kinase/ two-component response regulator (TAIR:AT1G66340.1); Has 45638 Blast hits to 45252 proteins in 1703 species: Archae - 298; Bacteria - 37888; Metazoa - 9; Fungi - 810; Plants - 1139; Viruses - 20; Other Eukaryotes - 5474 (source: NCBI BLink).  protein_id AT2G40940.1p  transcript_id AT2G40940.1  protein_id AT2G40940.1p  transcript_id AT2G40940.1  
At2g40950	chr2:017088589	0.0	C/17088589-17090326,17087823-17088250	AT2G40950.1  CDS  gene_syn ATBZIP17, BZIP17, T20B5.15, T20B5_15  gene BZIP17  function bZIP17 appears to regulate transcription as part of a salt and osmotic stress response. zip17 mutants show enhanced inhibition of primary root elongation in response to NaCl. Several salt-responsive genes, such as ATHB-7 show a reduced transcriptional response to a salt treatment in zip17 mutant seedlings. myc:bZIP17 undergoes proteolytic processing in salt-treated wild type seedlings, but not in s1p-3 (subtilase) mutants and there is also evidence for S1P-mediated cleavage of bZIP17 in vitro. In addition, an mGFP:bZIP17 protein moves from the ER to the nucleus following salt treatment.  go_component nucleus|GO:0005634|17662035|IDA  go_component endoplasmic reticulum|GO:0005783|17662035|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|17662035|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process hyperosmotic salinity response|GO:0042538|17662035|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function transcription activator activity|GO:0016563|17662035|IDA  product BZIP17; DNA binding / transcription activator/ transcription factor  note BZIP17; FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: hyperosmotic salinity response, regulation of transcription, DNA-dependent; LOCATED IN: endoplasmic reticulum, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: BZIP49 (BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49); DNA binding / transcription factor (TAIR:AT3G56660.1); Has 1485 Blast hits to 1444 proteins in 165 species: Archae - 0; Bacteria - 217; Metazoa - 448; Fungi - 162; Plants - 466; Viruses - 84; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT2G40950.1p  transcript_id AT2G40950.1  protein_id AT2G40950.1p  transcript_id AT2G40950.1  
At2g40955	chr2:017093093	0.0	W/17093093-17095132	AT2G40955.1  CDS  gene_syn T20B5.18, T20B5_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G15096.1); Has 87 Blast hits to 87 proteins in 18 species: Archae - 0; Bacteria - 2; Metazoa - 18; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT2G40955.1p  transcript_id AT2G40955.1  protein_id AT2G40955.1p  transcript_id AT2G40955.1  
At2g40960	chr2:017095637	0.0	W/17095637-17095748,17096156-17096774,17096870-17097143,17097318-17097368	AT2G40960.1  CDS  gene_syn T20B5.16, T20B5_16  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Single-stranded nucleic acid binding R3H (InterPro:IPR001374); BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT3G56680.1); Has 303 Blast hits to 303 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 193; Fungi - 23; Plants - 85; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G40960.1p  transcript_id AT2G40960.1  protein_id AT2G40960.1p  transcript_id AT2G40960.1  
At2g40970	chr2:017097772	0.0	C/17097772-17098518	AT2G40970.1  CDS  gene_syn T20B5.17, T20B5_17  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT3G10760.1); Has 887 Blast hits to 887 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 873; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT2G40970.1p  transcript_id AT2G40970.1  protein_id AT2G40970.1p  transcript_id AT2G40970.1  
At2g40980	chr2:017102090	0.0	W/17102090-17102096,17102461-17102841,17102978-17104443	AT2G40980.1  CDS  gene_syn T3K9.25, T3K9_25  go_component plasma membrane|GO:0005886|17317660|IDA  product unknown protein  note LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase-like (InterPro:IPR011009); Has 152 Blast hits to 139 proteins in 56 species: Archae - 0; Bacteria - 74; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT2G40980.1p  transcript_id AT2G40980.1  protein_id AT2G40980.1p  transcript_id AT2G40980.1  
At2g40990	chr2:017106663	0.0	C/17106663-17106773,17106284-17106463,17105898-17106203,17105600-17105824,17105097-17105510	AT2G40990.1  CDS  gene_syn T3K9.24, T3K9_24  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: zinc finger (DHHC type) family protein (TAIR:AT3G56920.1); Has 3952 Blast hits to 3947 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 1945; Fungi - 532; Plants - 399; Viruses - 0; Other Eukaryotes - 1076 (source: NCBI BLink).  protein_id AT2G40990.1p  transcript_id AT2G40990.1  protein_id AT2G40990.1p  transcript_id AT2G40990.1  
At2g40995	chr2:017109394	0.0	W/17109394-17109490,17109564-17109712	AT2G40995.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: LCR51 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 51) (TAIR:AT2G41997.1); Has 26 Blast hits to 26 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G40995.1p  transcript_id AT2G40995.1  protein_id AT2G40995.1p  transcript_id AT2G40995.1  
At2g41997	chr2:017110828	0.0	W/17110828-17110912,17111023-17111207	AT2G41997.1  CDS  gene_syn LCR51, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 51  gene LCR51  function Encodes a Defensin-like (DEFL) family protein  go_component endomembrane system|GO:0012505||IEA  product LCR51 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 51)  note LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 51 (LCR51); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40995.1); Has 15 Blast hits to 15 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G41997.1p  transcript_id AT2G41997.1  protein_id AT2G41997.1p  transcript_id AT2G41997.1  
At2g41000	chr2:017111673	0.0	W/17111673-17112094,17112319-17112388,17113185-17113247	AT2G41000.1  CDS  gene_syn T3K9.23, T3K9_23  go_function heat shock protein binding|GO:0031072||IEA  go_process protein folding|GO:0006457||ISS  product heat shock protein binding  note heat shock protein binding; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT4G39960.1); Has 16218 Blast hits to 16216 proteins in 1920 species: Archae - 108; Bacteria - 5358; Metazoa - 3265; Fungi - 1501; Plants - 1228; Viruses - 11; Other Eukaryotes - 4747 (source: NCBI BLink).  protein_id AT2G41000.1p  transcript_id AT2G41000.1  protein_id AT2G41000.1p  transcript_id AT2G41000.1  
At2g41000	chr2:017111673	0.0	W/17111673-17112094,17112319-17112532	AT2G41000.2  CDS  gene_syn T3K9.23, T3K9_23  go_function heat shock protein binding|GO:0031072||IEA  go_process protein folding|GO:0006457||ISS  product heat shock protein binding  note heat shock protein binding; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT4G39960.1); Has 16263 Blast hits to 16262 proteins in 1919 species: Archae - 108; Bacteria - 5361; Metazoa - 3273; Fungi - 1512; Plants - 1240; Viruses - 11; Other Eukaryotes - 4758 (source: NCBI BLink).  protein_id AT2G41000.2p  transcript_id AT2G41000.2  protein_id AT2G41000.2p  transcript_id AT2G41000.2  
At2g41010	chr2:017114015	0.0	C/17114015-17114731	AT2G41010.1  CDS  gene_syn ARABIDOPSIS THALIANA CALMODULIN (CAM)-BINDING PROTEIN OF 25 KDA, ATCAMBP25, T3K9.22, T3K9_22  gene ATCAMBP25  function Encodes a novel calmodulin binding protein whose gene expression is induced by dehydration and ionic (salt) and non-ionic (mannitol) osmotic stress. Lines over-expressing this gene are more sensitive and anti-sense lines are more tolerant to osmotic stress, suggesting this gene may be a negative regulator of response to osmotic stress.  go_component nucleus|GO:0005634|15086802|IDA  go_process response to water deprivation|GO:0009414|15086802|IEP  go_process response to salt stress|GO:0009651|15086802|IMP  go_process regulation of salicylic acid metabolic process|GO:0010337|15086802|IMP  go_function calmodulin binding|GO:0005516|15086802|IDA  product ATCAMBP25 (ARABIDOPSIS THALIANA CALMODULIN (CAM)-BINDING PROTEIN OF 25 KDA); calmodulin binding  note ARABIDOPSIS THALIANA CALMODULIN (CAM)-BINDING PROTEIN OF 25 KDA (ATCAMBP25); FUNCTIONS IN: calmodulin binding; INVOLVED IN: response to salt stress, response to water deprivation, regulation of salicylic acid metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT3G56880.1); Has 94 Blast hits to 94 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G41010.1p  transcript_id AT2G41010.1  protein_id AT2G41010.1p  transcript_id AT2G41010.1  
At2g41020	chr2:017117425	0.0	W/17117425-17117556,17117660-17117694,17117861-17117942,17118041-17118122,17118204-17118391,17118540-17118614,17118855-17119014,17119360-17119579,17119838-17119930,17120276-17120392,17120579-17120630,17120746-17120901	AT2G41020.1  CDS  gene_syn AT2G41030, T3K9.21, T3K9_21  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product WW domain-containing protein  note WW domain-containing protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WW/Rsp5/WWP (InterPro:IPR001202); Has 697 Blast hits to 666 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 455; Fungi - 63; Plants - 48; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).  protein_id AT2G41020.1p  transcript_id AT2G41020.1  protein_id AT2G41020.1p  transcript_id AT2G41020.1  
At2g41020	chr2:017117425	0.0	W/17117425-17117556,17117660-17117694,17117861-17117942,17118041-17118122,17118204-17118391,17118540-17118614,17118855-17119014,17119360-17119579,17119838-17120012	AT2G41020.2  CDS  gene_syn AT2G41030, T3K9.21, T3K9_21  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product WW domain-containing protein  note WW domain-containing protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WW/Rsp5/WWP (InterPro:IPR001202); Has 588 Blast hits to 562 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 356; Fungi - 63; Plants - 41; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).  protein_id AT2G41020.2p  transcript_id AT2G41020.2  protein_id AT2G41020.2p  transcript_id AT2G41020.2  
At2g41040	chr2:017121499	0.0	W/17121499-17121681,17121767-17121876,17121972-17122112,17122208-17122289,17122360-17122668,17122752-17122856,17122936-17123064	AT2G41040.1  CDS  gene_syn T3K9.19, T3K9_19  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_process metabolic process|GO:0008152||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_component plastoglobule|GO:0010287|16461379|IDA  product methyltransferase-related  note methyltransferase-related; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast, plastoglobule; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: methyltransferase-related (TAIR:AT1G78140.1); Has 4579 Blast hits to 4578 proteins in 1027 species: Archae - 190; Bacteria - 3325; Metazoa - 76; Fungi - 170; Plants - 189; Viruses - 0; Other Eukaryotes - 629 (source: NCBI BLink).  protein_id AT2G41040.1p  transcript_id AT2G41040.1  protein_id AT2G41040.1p  transcript_id AT2G41040.1  
At2g41050	chr2:017125462	0.0	C/17125462-17125622,17125305-17125347,17125186-17125212,17125030-17125119,17124776-17124936,17124504-17124654,17124296-17124418,17124014-17124133,17123890-17123910,17123738-17123796,17123559-17123649,17123388-17123471	AT2G41050.1  CDS  gene_syn T3K9.18, T3K9_18  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product PQ-loop repeat family protein / transmembrane family protein  note PQ-loop repeat family protein / transmembrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cystinosin/ERS1p repeat (InterPro:IPR006603); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G36850.1); Has 650 Blast hits to 469 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 206; Fungi - 357; Plants - 39; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT2G41050.1p  transcript_id AT2G41050.1  protein_id AT2G41050.1p  transcript_id AT2G41050.1  
At2g41060	chr2:017127138	0.0	W/17127138-17128493	AT2G41060.1  CDS  gene_syn T3K9.17, T3K9_17  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: UBP1 interacting protein 2a (UBA2a) (TAIR:AT3G56860.3); Has 17419 Blast hits to 11431 proteins in 532 species: Archae - 0; Bacteria - 698; Metazoa - 10129; Fungi - 1624; Plants - 2756; Viruses - 123; Other Eukaryotes - 2089 (source: NCBI BLink).  protein_id AT2G41060.1p  transcript_id AT2G41060.1  protein_id AT2G41060.1p  transcript_id AT2G41060.1  
At2g41060	chr2:017127138	0.0	W/17127138-17128493	AT2G41060.2  CDS  gene_syn T3K9.17, T3K9_17  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: UBP1 interacting protein 2a (UBA2a) (TAIR:AT3G56860.3); Has 17419 Blast hits to 11431 proteins in 532 species: Archae - 0; Bacteria - 698; Metazoa - 10129; Fungi - 1624; Plants - 2756; Viruses - 123; Other Eukaryotes - 2089 (source: NCBI BLink).  protein_id AT2G41060.2p  transcript_id AT2G41060.2  protein_id AT2G41060.2p  transcript_id AT2G41060.2  
At2g41070	chr2:017131249	0.0	W/17131249-17131884,17131971-17132042,17132128-17132208	AT2G41070.1  CDS  gene_syn ATBZIP12, DPBF4, EEL, ENHANCED EM LEVEL, T3K9.16, T3K9_16  gene EEL  function Transcription factor homologous to ABI5. Regulates AtEm1 expression by binding directly at the AtEm1 promoter. Located in the nucleus and expressed during seed maturation in the cotyledons and later in the whole embryo.  go_component nucleus|GO:0005634|12084834|TAS  go_component nucleus|GO:0005634|15642716|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process abscisic acid mediated signaling|GO:0009738|12084834|TAS  go_function DNA binding|GO:0003677|12084834|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700|12084834|TAS  go_function transcription factor activity|GO:0003700||ISS  product EEL (ENHANCED EM LEVEL); DNA binding / transcription factor  note ENHANCED EM LEVEL (EEL); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: abscisic acid mediated signaling, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: AREB3 (ABA-RESPONSIVE ELEMENT BINDING PROTEIN 3); DNA binding / transcription activator/ transcription factor (TAIR:AT3G56850.1); Has 1413 Blast hits to 1344 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 454; Fungi - 6; Plants - 897; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT2G41070.1p  transcript_id AT2G41070.1  protein_id AT2G41070.1p  transcript_id AT2G41070.1  
At2g41070	chr2:017131249	0.0	W/17131249-17131884,17131971-17132042,17132128-17132208	AT2G41070.2  CDS  gene_syn ATBZIP12, DPBF4, EEL, ENHANCED EM LEVEL, T3K9.16, T3K9_16  gene EEL  function Transcription factor homologous to ABI5. Regulates AtEm1 expression by binding directly at the AtEm1 promoter. Located in the nucleus and expressed during seed maturation in the cotyledons and later in the whole embryo.  go_component nucleus|GO:0005634|12084834|TAS  go_component nucleus|GO:0005634|15642716|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process abscisic acid mediated signaling|GO:0009738|12084834|TAS  go_function DNA binding|GO:0003677|12084834|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700|12084834|TAS  go_function transcription factor activity|GO:0003700||ISS  product EEL (ENHANCED EM LEVEL); DNA binding / transcription factor  note ENHANCED EM LEVEL (EEL); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: abscisic acid mediated signaling, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: AREB3 (ABA-RESPONSIVE ELEMENT BINDING PROTEIN 3); DNA binding / transcription activator/ transcription factor (TAIR:AT3G56850.1); Has 1413 Blast hits to 1344 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 454; Fungi - 6; Plants - 897; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT2G41070.2p  transcript_id AT2G41070.2  protein_id AT2G41070.2p  transcript_id AT2G41070.2  
At2g41070	chr2:017131249	0.0	W/17131249-17131884,17131971-17132042,17132128-17132208	AT2G41070.3  CDS  gene_syn ATBZIP12, DPBF4, EEL, ENHANCED EM LEVEL, T3K9.16, T3K9_16  gene EEL  function Transcription factor homologous to ABI5. Regulates AtEm1 expression by binding directly at the AtEm1 promoter. Located in the nucleus and expressed during seed maturation in the cotyledons and later in the whole embryo.  go_component nucleus|GO:0005634|12084834|TAS  go_component nucleus|GO:0005634|15642716|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process abscisic acid mediated signaling|GO:0009738|12084834|TAS  go_function DNA binding|GO:0003677|12084834|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700|12084834|TAS  go_function transcription factor activity|GO:0003700||ISS  product EEL (ENHANCED EM LEVEL); DNA binding / transcription factor  note ENHANCED EM LEVEL (EEL); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: abscisic acid mediated signaling, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: AREB3 (ABA-RESPONSIVE ELEMENT BINDING PROTEIN 3); DNA binding / transcription activator/ transcription factor (TAIR:AT3G56850.1); Has 1413 Blast hits to 1344 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 454; Fungi - 6; Plants - 897; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT2G41070.3p  transcript_id AT2G41070.3  protein_id AT2G41070.3p  transcript_id AT2G41070.3  
At2g41080	chr2:017132857	0.0	W/17132857-17134554	AT2G41080.1  CDS  gene_syn T3K9.15, T3K9_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G13650.1); Has 12688 Blast hits to 4540 proteins in 132 species: Archae - 0; Bacteria - 2; Metazoa - 14; Fungi - 19; Plants - 12498; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink).  protein_id AT2G41080.1p  transcript_id AT2G41080.1  protein_id AT2G41080.1p  transcript_id AT2G41080.1  
At2g41082	chr2:017134825	0.0	W/17134825-17134929	AT2G41082.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G41082.1p  transcript_id AT2G41082.1  protein_id AT2G41082.1p  transcript_id AT2G41082.1  
At2g41090	chr2:017135823	0.0	W/17135823-17135898,17136002-17136362,17136480-17136618	AT2G41090.1  CDS  gene_syn T3K9.14, T3K9_14  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_function calcium ion binding|GO:0005509||ISS  product calmodulin-like calcium-binding protein, 22 kDa (CaBP-22)  note calmodulin-like calcium-binding protein, 22 kDa (CaBP-22); FUNCTIONS IN: calcium ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: CAM5 (CALMODULIN 5); calcium ion binding (TAIR:AT2G27030.3); Has 19480 Blast hits to 14300 proteins in 1380 species: Archae - 0; Bacteria - 78; Metazoa - 9080; Fungi - 4065; Plants - 3401; Viruses - 2; Other Eukaryotes - 2854 (source: NCBI BLink).  protein_id AT2G41090.1p  transcript_id AT2G41090.1  protein_id AT2G41090.1p  transcript_id AT2G41090.1  
At2g41100	chr2:017138131	0.0	W/17138131-17138206,17138307-17138573,17138674-17138943,17139045-17139406	AT2G41100.1  CDS  gene_syn ARABIDOPSIS THALIANA CALMODULIN LIKE 4, ATCAL4, CALMODULIN-RELATED PROTEIN, T3K9.13, T3K9_13, TCH3, TOUCH 3  gene TCH3  function encodes a calmodulin-like protein, with six potential calcium binding domains. Calcium binding shown by Ca(2+)-specific shift in electrophoretic mobility. Expression induced by touch and darkness. Expression may also be developmentally controlled. Expression in growing regions of roots, vascular tissue, root/shoot junctions, trichomes, branch points of the shoot, and regions of siliques and flowers.  go_component plasma membrane|GO:0005886|17151019|IDA  go_process response to temperature stimulus|GO:0009266||NAS  go_process response to mechanical stimulus|GO:0009612|7827491|IEP  go_process response to absence of light|GO:0009646|7827491|IEP  go_process thigmotropism|GO:0009652|8564305|IEP  go_function calcium ion binding|GO:0005509|7827491|IDA  product TCH3 (TOUCH 3); calcium ion binding  note TOUCH 3 (TCH3); FUNCTIONS IN: calcium ion binding; INVOLVED IN: thigmotropism, response to temperature stimulus, response to mechanical stimulus, response to absence of light; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: CAM3 (CALMODULIN 3); calcium ion binding (TAIR:AT3G56800.1); Has 37485 Blast hits to 15338 proteins in 1395 species: Archae - 0; Bacteria - 230; Metazoa - 16127; Fungi - 9417; Plants - 5887; Viruses - 2; Other Eukaryotes - 5822 (source: NCBI BLink).  protein_id AT2G41100.1p  transcript_id AT2G41100.1  protein_id AT2G41100.1p  transcript_id AT2G41100.1  
At2g41100	chr2:017138336	0.0	W/17138336-17138573,17138674-17138943,17139045-17139406	AT2G41100.3  CDS  gene_syn ARABIDOPSIS THALIANA CALMODULIN LIKE 4, ATCAL4, CALMODULIN-RELATED PROTEIN, T3K9.13, T3K9_13, TCH3, TOUCH 3  gene TCH3  function encodes a calmodulin-like protein, with six potential calcium binding domains. Calcium binding shown by Ca(2+)-specific shift in electrophoretic mobility. Expression induced by touch and darkness. Expression may also be developmentally controlled. Expression in growing regions of roots, vascular tissue, root/shoot junctions, trichomes, branch points of the shoot, and regions of siliques and flowers.  go_component plasma membrane|GO:0005886|17151019|IDA  go_process response to temperature stimulus|GO:0009266||NAS  go_process response to mechanical stimulus|GO:0009612|7827491|IEP  go_process response to absence of light|GO:0009646|7827491|IEP  go_process thigmotropism|GO:0009652|8564305|IEP  go_function calcium ion binding|GO:0005509|7827491|IDA  product TCH3 (TOUCH 3); calcium ion binding  note TOUCH 3 (TCH3); FUNCTIONS IN: calcium ion binding; INVOLVED IN: thigmotropism, response to temperature stimulus, response to mechanical stimulus, response to absence of light; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: CAM3 (CALMODULIN 3); calcium ion binding (TAIR:AT3G56800.1); Has 32456 Blast hits to 14890 proteins in 1380 species: Archae - 0; Bacteria - 156; Metazoa - 13598; Fungi - 8516; Plants - 5268; Viruses - 2; Other Eukaryotes - 4916 (source: NCBI BLink).  protein_id AT2G41100.3p  transcript_id AT2G41100.3  protein_id AT2G41100.3p  transcript_id AT2G41100.3  
At2g41100	chr2:017138706	0.0	W/17138706-17138943,17139045-17139406	AT2G41100.2  CDS  gene_syn ARABIDOPSIS THALIANA CALMODULIN LIKE 4, ATCAL4, CALMODULIN-RELATED PROTEIN, T3K9.13, T3K9_13, TCH3, TOUCH 3  gene TCH3  function encodes a calmodulin-like protein, with six potential calcium binding domains. Calcium binding shown by Ca(2+)-specific shift in electrophoretic mobility. Expression induced by touch and darkness. Expression may also be developmentally controlled. Expression in growing regions of roots, vascular tissue, root/shoot junctions, trichomes, branch points of the shoot, and regions of siliques and flowers.  go_component plasma membrane|GO:0005886|17151019|IDA  go_process response to temperature stimulus|GO:0009266||NAS  go_process response to mechanical stimulus|GO:0009612|7827491|IEP  go_process response to absence of light|GO:0009646|7827491|IEP  go_process thigmotropism|GO:0009652|8564305|IEP  go_function calcium ion binding|GO:0005509|7827491|IDA  product TCH3 (TOUCH 3); calcium ion binding  note TOUCH 3 (TCH3); FUNCTIONS IN: calcium ion binding; INVOLVED IN: thigmotropism, response to temperature stimulus, response to mechanical stimulus, response to absence of light; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: CAM1 (CALMODULIN 1); calcium ion binding (TAIR:AT5G37780.3); Has 20844 Blast hits to 12720 proteins in 1331 species: Archae - 0; Bacteria - 58; Metazoa - 8549; Fungi - 5632; Plants - 3807; Viruses - 2; Other Eukaryotes - 2796 (source: NCBI BLink).  protein_id AT2G41100.2p  transcript_id AT2G41100.2  protein_id AT2G41100.2p  transcript_id AT2G41100.2  
At2g41110	chr2:017140379	0.0	W/17140379-17140454,17140819-17141192	AT2G41110.1  CDS  gene_syn ATCAL5, CALMODULIN 2, CAM2, T3K9.12, T3K9_12  gene CAM2  function Encodes a touch-inducible calmodulin that has higher affinity to kinesin-like calmodulin binding motor protein than CAM4 or CAM6.  go_process protein catabolic process|GO:0030163|15987637|TAS  go_function calcium ion binding|GO:0005509||ISS  go_function protein binding|GO:0005515|15987637|IDA  product CAM2 (CALMODULIN 2); calcium ion binding / protein binding  note CALMODULIN 2 (CAM2); FUNCTIONS IN: protein binding, calcium ion binding; INVOLVED IN: protein catabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: CAM3 (CALMODULIN 3); calcium ion binding (TAIR:AT3G56800.1); Has 26600 Blast hits to 18178 proteins in 1445 species: Archae - 0; Bacteria - 129; Metazoa - 12459; Fungi - 5643; Plants - 4222; Viruses - 0; Other Eukaryotes - 4147 (source: NCBI BLink).  protein_id AT2G41110.1p  transcript_id AT2G41110.1  protein_id AT2G41110.1p  transcript_id AT2G41110.1  
At2g41120	chr2:017142030	0.0	C/17142030-17142419,17141796-17141943,17141454-17141701	AT2G41120.1  CDS  gene_syn T3K9.11, T3K9_11  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF309 (InterPro:IPR005500); Has 288 Blast hits to 288 proteins in 82 species: Archae - 0; Bacteria - 142; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).  protein_id AT2G41120.1p  transcript_id AT2G41120.1  protein_id AT2G41120.1p  transcript_id AT2G41120.1  
At2g41130	chr2:017143360	0.0	W/17143360-17143653,17144219-17144686	AT2G41130.1  CDS  gene_syn T3K9.10, T3K9_10  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast envelope; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT3G56770.1); Has 484 Blast hits to 484 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 21; Plants - 452; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G41130.1p  transcript_id AT2G41130.1  protein_id AT2G41130.1p  transcript_id AT2G41130.1  
At2g41140	chr2:017150492	0.0	W/17150492-17150974,17151148-17151278,17151370-17151411,17151497-17151605,17151814-17151892,17151984-17152280,17152396-17152508,17152625-17152732,17152821-17152883,17152966-17153133,17153241-17153378	AT2G41140.1  CDS  gene_syn CDPK-RELATED KINASE 1, CRK1, T3K9.9, T3K9_9  gene CRK1  function Encodes CDPK-related kinase 1 (CRK1).  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function calmodulin-dependent protein kinase activity|GO:0004683|18466301|IDA  go_function calcium-dependent protein serine/threonine phosphatase activity|GO:0004723||ISS  go_function calcium ion binding|GO:0005509||ISS  go_function kinase activity|GO:0016301||ISS  product CRK1 (CDPK-RELATED KINASE 1); calcium ion binding / calcium-dependent protein serine/threonine phosphatase/ calmodulin-dependent protein kinase/ kinase  note CDPK-RELATED KINASE 1 (CRK1); FUNCTIONS IN: calmodulin-dependent protein kinase activity, calcium-dependent protein serine/threonine phosphatase activity, kinase activity, calcium ion binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase, putative / CDPK, putative (TAIR:AT3G56760.1); Has 85621 Blast hits to 84286 proteins in 1937 species: Archae - 69; Bacteria - 8120; Metazoa - 36983; Fungi - 8399; Plants - 14031; Viruses - 458; Other Eukaryotes - 17561 (source: NCBI BLink).  protein_id AT2G41140.1p  transcript_id AT2G41140.1  protein_id AT2G41140.1p  transcript_id AT2G41140.1  
At2g41150	chr2:017153851	0.0	W/17153851-17154176,17154339-17154431,17154533-17154766,17154893-17154995,17155098-17155327,17155405-17155633	AT2G41150.2  CDS  gene_syn T3K9.8, T3K9_8  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56750.1); Has 70 Blast hits to 70 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT2G41150.2p  transcript_id AT2G41150.2  protein_id AT2G41150.2p  transcript_id AT2G41150.2  
At2g41150	chr2:017153851	0.0	W/17153851-17154176,17154339-17154431,17154533-17154766,17154893-17155019	AT2G41150.1  CDS  gene_syn T3K9.8, T3K9_8  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56750.1); Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G41150.1p  transcript_id AT2G41150.1  protein_id AT2G41150.1p  transcript_id AT2G41150.1  
At2g41160	chr2:017158663	0.0	C/17158663-17158687,17158476-17158576,17157766-17157906,17157568-17157634,17157007-17157158,17156819-17156920,17156591-17156698,17156314-17156481	AT2G41160.1  CDS  gene_syn T3K9.7, T3K9_7  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ubiquitin-associated (UBA)/TS-N domain-containing protein  note ubiquitin-associated (UBA)/TS-N domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: ubiquitin-associated (UBA)/TS-N domain-containing protein (TAIR:AT3G56740.1); Has 179 Blast hits to 179 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 58; Fungi - 65; Plants - 43; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT2G41160.1p  transcript_id AT2G41160.1  protein_id AT2G41160.1p  transcript_id AT2G41160.1  
At2g41170	chr2:017160243	0.0	C/17160243-17160845,17160042-17160121,17159788-17159960,17159597-17159668,17159310-17159497	AT2G41170.1  CDS  gene_syn T3K9.6, T3K9_6  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G26850.1); Has 53 Blast hits to 52 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G41170.1p  transcript_id AT2G41170.1  protein_id AT2G41170.1p  transcript_id AT2G41170.1  
At2g41178	chr2:017164795	0.0	C/17164795-17165449	AT2G41178.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G41180  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G41178.1  
At2g41180	chr2:017165242	0.0	W/17165242-17165667	AT2G41180.1  CDS  gene_syn T3K9.5, T3K9_5  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product sigA-binding protein-related  note sigA-binding protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: SIB1 (SIGMA FACTOR BINDING PROTEIN 1); binding / protein binding (TAIR:AT3G56710.1); Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G41180.1p  transcript_id AT2G41180.1  protein_id AT2G41180.1p  transcript_id AT2G41180.1  
At2g41190	chr2:017169931	0.0	C/17169931-17170145,17169576-17169826,17169293-17169507,17169167-17169190,17168885-17169065,17168572-17168791,17168344-17168479,17168078-17168243,17167930-17167973,17167769-17167831,17167561-17167656	AT2G41190.1  CDS  gene_syn T3K9.4, T3K9_4  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product amino acid transporter family protein  note amino acid transporter family protein; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid transporter family protein (TAIR:AT2G39130.1); Has 3592 Blast hits to 3564 proteins in 217 species: Archae - 9; Bacteria - 55; Metazoa - 1556; Fungi - 509; Plants - 781; Viruses - 8; Other Eukaryotes - 674 (source: NCBI BLink).  protein_id AT2G41190.1p  transcript_id AT2G41190.1  protein_id AT2G41190.1p  transcript_id AT2G41190.1  
At2g41200	chr2:017171657	0.0	W/17171657-17171678,17171784-17171922,17172196-17172268,17172678-17172929	AT2G41200.1  CDS  gene_syn T3K9.3, T3K9_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; Has 12 Blast hits to 12 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G41200.1p  transcript_id AT2G41200.1  protein_id AT2G41200.1p  transcript_id AT2G41200.1  
At2g41210	chr2:017173627	0.0	W/17173627-17174807,17174897-17175064,17175155-17175320,17175422-17175538,17175627-17175820,17175901-17176031,17176121-17176193,17176287-17176575	AT2G41210.1  CDS  gene_syn PHOSPHATIDYLINOSITOL- 4-PHOSPHATE 5-KINASE 5, PIP5K5, T3K9.2, T3K9_2  gene PIP5K5  function Encodes a protein with phosphatidylinositol-4-phosphate 5-kinase activity that plays a role in pollen tip growth. The enzyme localizes to the apical plasma membrane and adjacent cytosolic region of pollen tubes. Overexpression of this gene leads to increased deposition of pectin in the cell wall at the tip of the pollen tube and causes altered pollen tube morphology.  go_component apical plasma membrane|GO:0016324|19060112|IDA  go_component cytosolic part|GO:0044445|19060112|IDA  go_process plant-type cell wall modification|GO:0009827|19060112|IMP  go_process pollen germination|GO:0009846|19060112|IGI  go_process pollen tube growth|GO:0009860|19060112|IGI  go_process phosphatidylinositol metabolic process|GO:0046488|19060112|IDA  go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308|19060112|IDA  go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308||ISS  product PIP5K5 (PHOSPHATIDYLINOSITOL- 4-PHOSPHATE 5-KINASE 5); 1-phosphatidylinositol-4-phosphate 5-kinase  note PHOSPHATIDYLINOSITOL- 4-PHOSPHATE 5-KINASE 5 (PIP5K5); FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity; INVOLVED IN: plant-type cell wall modification, pollen germination, phosphatidylinositol metabolic process, pollen tube growth; LOCATED IN: apical plasma membrane, cytosolic part; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, plant (InterPro:IPR017163), MORN motif (InterPro:IPR003409), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: PIP5K4 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE 4); 1-phosphatidylinositol-4-phosphate 5-kinase (TAIR:AT3G56960.1); Has 23106 Blast hits to 6294 proteins in 379 species: Archae - 2; Bacteria - 2497; Metazoa - 3795; Fungi - 296; Plants - 737; Viruses - 2; Other Eukaryotes - 15777 (source: NCBI BLink).  protein_id AT2G41210.1p  transcript_id AT2G41210.1  protein_id AT2G41210.1p  transcript_id AT2G41210.1  
At2g41220	chr2:017177934	0.0	W/17177934-17178215,17178408-17178720,17178828-17179270,17179355-17179486,17179818-17179916,17179999-17180069,17180393-17180489,17180866-17180958,17181060-17181205,17181486-17181645,17181787-17181897,17181986-17182201,17182721-17182878,17183157-17183286,17183475-17183533,17183623-17183728,17184223-17184319,17184603-17184718,17184803-17185000,17185084-17185194,17185361-17185600,17185675-17185773,17186011-17186106,17186238-17186435,17186524-17186598,17186674-17186799,17186896-17186994,17187118-17187260,17187362-17187455,17187540-17187778,17187884-17187962,17188041-17188124,17188209-17188388	AT2G41220.1  CDS  gene_syn F13H10.23, F13H10_23, GLU2, GLUTAMATE SYNTHASE 2, GLUTAMATE SYNTHASE PRECURSOR  gene GLU2  function Encodes a gene whose sequence is similar to ferredoxin dependent glutamate synthase (Fd-GOGAT). Expression is most abundant in root.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process glutamate biosynthetic process|GO:0006537||IEA  go_process nitrogen compound metabolic process|GO:0006807||IEA  go_process metabolic process|GO:0008152||IEA  go_function glutamate synthase (ferredoxin) activity|GO:0016041|9596633|ISS  product GLU2 (GLUTAMATE SYNTHASE 2); glutamate synthase (ferredoxin)  note GLUTAMATE SYNTHASE 2 (GLU2); FUNCTIONS IN: glutamate synthase (ferredoxin) activity; INVOLVED IN: nitrogen compound metabolic process, glutamate biosynthetic process, metabolic process; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase, class-II (InterPro:IPR000583), Aldolase-type TIM barrel (InterPro:IPR013785), Glutamate synthase, alpha subunit, C-terminal (InterPro:IPR002489), Glutamate synthase, central-N (InterPro:IPR006982), Glutamate synthase, central-C (InterPro:IPR002932), Glutamine amidotransferase, type II (InterPro:IPR017932); BEST Arabidopsis thaliana protein match is: GLU1 (GLUTAMATE SYNTHASE 1); glutamate synthase (ferredoxin) (TAIR:AT5G04140.1); Has 14667 Blast hits to 14609 proteins in 1132 species: Archae - 184; Bacteria - 3223; Metazoa - 94; Fungi - 100; Plants - 96; Viruses - 0; Other Eukaryotes - 10970 (source: NCBI BLink).  protein_id AT2G41220.1p  transcript_id AT2G41220.1  protein_id AT2G41220.1p  transcript_id AT2G41220.1  
At2g41225	chr2:017191255	0.0	C/17191255-17191458	AT2G41225.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G41225.1p  transcript_id AT2G41225.1  protein_id AT2G41225.1p  transcript_id AT2G41225.1  
At2g41230	chr2:017195359	0.0	C/17195359-17195625	AT2G41230.1  CDS  gene_syn F13H10.22, F13H10_22  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; Has 63 Blast hits to 63 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G41230.1p  transcript_id AT2G41230.1  protein_id AT2G41230.1p  transcript_id AT2G41230.1  
At2g41233	chr2:017196651	0.0	C/17196651-17196758	AT2G41233.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G41233.1p  transcript_id AT2G41233.1  protein_id AT2G41233.1p  transcript_id AT2G41233.1  
At2g41240	chr2:017199039	0.0	C/17199039-17199320,17198331-17198774	AT2G41240.2  CDS  gene_syn BASIC HELIX-LOOP-HELIX PROTEIN 100, BHLH100, F13H10.21, F13H10_21  gene BHLH100  go_component nucleus|GO:0005634||IEA  go_process response to water deprivation|GO:0009414|18552355|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product BHLH100 (BASIC HELIX-LOOP-HELIX PROTEIN 100); DNA binding / transcription factor  note BASIC HELIX-LOOP-HELIX PROTEIN 100 (BHLH100); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to water deprivation, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Achaete-scute transcription factor related (InterPro:IPR015660), Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BHLH039; DNA binding / transcription factor (TAIR:AT3G56980.1); Has 508 Blast hits to 507 proteins in 75 species: Archae - 0; Bacteria - 2; Metazoa - 113; Fungi - 20; Plants - 368; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT2G41240.2p  transcript_id AT2G41240.2  protein_id AT2G41240.2p  transcript_id AT2G41240.2  
At2g41240	chr2:017199039	0.0	C/17199039-17199320,17198331-17198777	AT2G41240.1  CDS  gene_syn BASIC HELIX-LOOP-HELIX PROTEIN 100, BHLH100, F13H10.21, F13H10_21  gene BHLH100  go_component nucleus|GO:0005634||IEA  go_process response to water deprivation|GO:0009414|18552355|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product BHLH100 (BASIC HELIX-LOOP-HELIX PROTEIN 100); DNA binding / transcription factor  note BASIC HELIX-LOOP-HELIX PROTEIN 100 (BHLH100); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to water deprivation, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Achaete-scute transcription factor related (InterPro:IPR015660), Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BHLH039; DNA binding / transcription factor (TAIR:AT3G56980.1); Has 647 Blast hits to 646 proteins in 86 species: Archae - 0; Bacteria - 2; Metazoa - 202; Fungi - 0; Plants - 420; Viruses - 12; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT2G41240.1p  transcript_id AT2G41240.1  protein_id AT2G41240.1p  transcript_id AT2G41240.1  
At2g41250	chr2:017202261	0.0	C/17202261-17202551,17201895-17202001,17201506-17201614,17201260-17201421,17200985-17201158,17200862-17200891	AT2G41250.1  CDS  gene_syn F13H10.20, F13H10_20  go_component mitochondrion|GO:0005739||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function phosphoglycolate phosphatase activity|GO:0008967||IEA  go_function hydrolase activity|GO:0016787||IEA  go_function hydrolase activity|GO:0016787||ISS  product haloacid dehalogenase-like hydrolase family protein  note haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Haloacid dehydrogenase/epoxide hydrolase (InterPro:IPR005833), HAD-superfamily hydrolase, subfamily IA, REG-2-like (InterPro:IPR011949), HAD-superfamily hydrolase, subfamily IA, variant 1 (InterPro:IPR006439); BEST Arabidopsis thaliana protein match is: haloacid dehalogenase-like hydrolase family protein (TAIR:AT1G14310.1); Has 2756 Blast hits to 2756 proteins in 846 species: Archae - 137; Bacteria - 1969; Metazoa - 225; Fungi - 52; Plants - 75; Viruses - 0; Other Eukaryotes - 298 (source: NCBI BLink).  protein_id AT2G41250.1p  transcript_id AT2G41250.1  protein_id AT2G41250.1p  transcript_id AT2G41250.1  
At2g41260	chr2:017206541	0.0	W/17206541-17206631,17206741-17206885,17207051-17207492	AT2G41260.1  CDS  gene_syn ATM17, F13H10.19, F13H10_19, M17  gene M17  function Late-embryogenesis-abundant gene. Involved in the acquisition of desiccation tolerance during late phase of embryogenesis.  go_component endomembrane system|GO:0012505||IEA  go_process embryonic development|GO:0009790|10394954|TAS  go_function molecular_function|GO:0003674||ND  product M17  note M17; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development; LOCATED IN: endomembrane system; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: M10 (TAIR:AT2G41280.1); Has 3441 Blast hits to 2344 proteins in 303 species: Archae - 2; Bacteria - 382; Metazoa - 1491; Fungi - 271; Plants - 995; Viruses - 36; Other Eukaryotes - 264 (source: NCBI BLink).  protein_id AT2G41260.1p  transcript_id AT2G41260.1  protein_id AT2G41260.1p  transcript_id AT2G41260.1  
At2g41260	chr2:017206541	0.0	W/17206541-17206631,17206741-17207492	AT2G41260.2  CDS  gene_syn ATM17, F13H10.19, F13H10_19, M17  gene M17  function Late-embryogenesis-abundant gene. Involved in the acquisition of desiccation tolerance during late phase of embryogenesis.  go_component endomembrane system|GO:0012505||IEA  go_process embryonic development|GO:0009790|10394954|TAS  go_function molecular_function|GO:0003674||ND  product M17  note M17; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development; LOCATED IN: endomembrane system; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: M10 (TAIR:AT2G41280.1); Has 8947 Blast hits to 4295 proteins in 399 species: Archae - 4; Bacteria - 1976; Metazoa - 3583; Fungi - 522; Plants - 1843; Viruses - 103; Other Eukaryotes - 916 (source: NCBI BLink).  protein_id AT2G41260.2p  transcript_id AT2G41260.2  protein_id AT2G41260.2p  transcript_id AT2G41260.2  
At2g41270	chr2:017208545	0.0	C/17208545-17209402	AT2G41270.1  pseudogenic_transcript  pseudo  gene_syn F13H10.18  note pseudogene, similar to putative strictosidine synthase, non-consensus splice site, AC donor site at exon 1, TT acceptor and GA donor sites at exon 2; blastp match of 41% identity and 3.5e-09 P-value to GP|8489790|gb|AAF75751.1|AF261141_1|AF261141 putative strictosidine synthase {Lycopersicon esculentum}  
At2g41280	chr2:017209763	0.0	W/17209763-17209853,17209979-17210211	AT2G41280.1  CDS  gene_syn ATM10, F13H10.17, F13H10_17, M10  gene M10  function Encodes a hydrophilic protein similar to Late Embryogenesis Activated (LEA) proteins expressed during embryogenesis, which are thought to be involved in the acquisition of dessication tolerance.  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component extracellular region|GO:0005576|10394954|ISS  go_process seed dormancy|GO:0010162|10394954|ISS  go_function molecular_function|GO:0003674||ND  product M10  note M10; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation, seed dormancy; LOCATED IN: extracellular region; BEST Arabidopsis thaliana protein match is: M17 (TAIR:AT2G41260.2); Has 23 Blast hits to 15 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G41280.1p  transcript_id AT2G41280.1  protein_id AT2G41280.1p  transcript_id AT2G41280.1  
At2g41290	chr2:017212627	0.0	C/17212627-17212904,17211317-17211583,17210599-17211184	AT2G41290.1  CDS  gene_syn F13H10.16, F13H10_16  go_component endomembrane system|GO:0012505||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function strictosidine synthase activity|GO:0016844||IEA  go_process alkaloid biosynthetic process|GO:0009821||ISS  go_function strictosidine synthase activity|GO:0016844||ISS  product strictosidine synthase family protein  note strictosidine synthase family protein; FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: alkaloid biosynthetic process, biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Strictosidine synthase, conserved region (InterPro:IPR018119), Strictosidine synthase (InterPro:IPR004141), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: strictosidine synthase family protein (TAIR:AT3G57030.1); Has 776 Blast hits to 769 proteins in 158 species: Archae - 1; Bacteria - 174; Metazoa - 199; Fungi - 10; Plants - 298; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).  protein_id AT2G41290.1p  transcript_id AT2G41290.1  protein_id AT2G41290.1p  transcript_id AT2G41290.1  
At2g41300	chr2:017216236	0.0	C/17216236-17216292,17215833-17216134,17215319-17215573,17214312-17214882	AT2G41300.1  CDS  gene_syn F13H10.15, F13H10_15  go_component endomembrane system|GO:0012505||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function strictosidine synthase activity|GO:0016844||IEA  go_process alkaloid biosynthetic process|GO:0009821||ISS  go_function strictosidine synthase activity|GO:0016844||ISS  product strictosidine synthase  note strictosidine synthase; FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: alkaloid biosynthetic process, biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Strictosidine synthase (InterPro:IPR004141), Strictosidine synthase, conserved region (InterPro:IPR018119), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: strictosidine synthase family protein (TAIR:AT3G57010.1); Has 695 Blast hits to 688 proteins in 133 species: Archae - 1; Bacteria - 127; Metazoa - 196; Fungi - 0; Plants - 292; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT2G41300.1p  transcript_id AT2G41300.1  protein_id AT2G41300.1p  transcript_id AT2G41300.1  
At2g41310	chr2:017222280	0.0	W/17222280-17222382,17222492-17222592,17222695-17222772,17223006-17223076,17223212-17223536	AT2G41310.1  CDS  gene_syn ARR8, ATRR3, RESPONSE REGULATOR 3, RESPONSE REGULATOR 8  gene ATRR3  function Encodes an A- type response Regulator that is primarily expressed in the root and is involved in cytokinin-mediated signalling.  go_component nucleus|GO:0005634|18642946|IDA  go_process two-component signal transduction system (phosphorelay)|GO:0000160|9607306|ISS  go_process response to stress|GO:0006950|9607306|IEP  go_process circadian rhythm|GO:0007623|16326927|IMP  go_process cytokinin mediated signaling|GO:0009736|12054542|IMP  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_function two-component response regulator activity|GO:0000156|12068096|ISS  go_function two-component response regulator activity|GO:0000156||ISS  go_function transcription regulator activity|GO:0030528|12068096|TAS  product ATRR3 (RESPONSE REGULATOR 3); transcription regulator/ two-component response regulator  note RESPONSE REGULATOR 3 (ATRR3); FUNCTIONS IN: transcription regulator activity, two-component response regulator activity; INVOLVED IN: cytokinin mediated signaling, circadian rhythm, two-component signal transduction system (phosphorelay), response to stress; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver region (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: ARR9 (RESPONSE REGULATOR 9); transcription regulator/ two-component response regulator (TAIR:AT3G57040.1); Has 22995 Blast hits to 22744 proteins in 1411 species: Archae - 121; Bacteria - 19110; Metazoa - 4; Fungi - 276; Plants - 641; Viruses - 4; Other Eukaryotes - 2839 (source: NCBI BLink).  protein_id AT2G41310.1p  transcript_id AT2G41310.1  protein_id AT2G41310.1p  transcript_id AT2G41310.1  
At2g41312	chr2:017225523	0.0	W/17225523-17226045	AT2G41312.2  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G41312.2  
At2g41312	chr2:017225542	0.0	W/17225542-17226693	AT2G41312.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G41312.1  
At2g41330	chr2:017227067	0.0	W/17227067-17228275	AT2G41330.1  CDS  gene_syn F13H10.12, F13H10_12  go_component chloroplast|GO:0009507||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  product glutaredoxin family protein  note glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: N-terminal protein myristoylation, cell redox homeostasis; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin family protein (TAIR:AT3G57070.1); Has 370 Blast hits to 370 proteins in 70 species: Archae - 0; Bacteria - 36; Metazoa - 94; Fungi - 0; Plants - 208; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT2G41330.1p  transcript_id AT2G41330.1  protein_id AT2G41330.1p  transcript_id AT2G41330.1  
At2g41340	chr2:017229026	0.0	W/17229026-17229265,17229842-17230018,17230108-17230221,17230317-17230442	AT2G41340.1  CDS  gene_syn F13H10.11, F13H10_11, RNA POLYMERASE II FIFTH LARGEST SUBUNIT, D, RPB5D  gene RPB5D  function NRPE5-like protein of unknown function; homologous to budding yeast RPB5  go_component nucleus|GO:0005634||IEA  go_process transcription|GO:0006350||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_process transcription|GO:0006350||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product RPB5D (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, D); DNA binding / DNA-directed RNA polymerase  note RNA POLYMERASE II FIFTH LARGEST SUBUNIT, D (RPB5D); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, Rpb5, N-terminal (InterPro:IPR005571), RNA polymerase, subunit H/Rpb5 C-terminal (InterPro:IPR000783), DNA-directed RNA polymerase, RPB5 subunit (InterPro:IPR014381); BEST Arabidopsis thaliana protein match is: NRPE5; DNA binding / DNA-directed RNA polymerase (TAIR:AT3G57080.1); Has 710 Blast hits to 710 proteins in 235 species: Archae - 142; Bacteria - 0; Metazoa - 126; Fungi - 144; Plants - 73; Viruses - 5; Other Eukaryotes - 220 (source: NCBI BLink).  protein_id AT2G41340.1p  transcript_id AT2G41340.1  protein_id AT2G41340.1p  transcript_id AT2G41340.1  
At2g41342	chr2:017230650	0.0	C/17230650-17230898	AT2G41342.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 10 Blast hits to 9 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G41342.1p  transcript_id AT2G41342.1  protein_id AT2G41342.1p  transcript_id AT2G41342.1  
At2g41350	chr2:017231565	0.0	W/17231565-17231820,17232002-17232134,17232213-17232347,17232472-17232595,17233089-17233229,17233348-17233458	AT2G41350.2  CDS  gene_syn F13H10.10, F13H10_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G21980.1); Has 180 Blast hits to 180 proteins in 76 species: Archae - 0; Bacteria - 57; Metazoa - 71; Fungi - 15; Plants - 20; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT2G41350.2p  transcript_id AT2G41350.2  protein_id AT2G41350.2p  transcript_id AT2G41350.2  
At2g41350	chr2:017231565	0.0	W/17231565-17231820,17232002-17232134,17232213-17232347,17232472-17232595,17233092-17233229,17233348-17233458	AT2G41350.1  CDS  gene_syn F13H10.10, F13H10_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G21980.1); Has 123 Blast hits to 123 proteins in 41 species: Archae - 0; Bacteria - 6; Metazoa - 76; Fungi - 9; Plants - 20; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT2G41350.1p  transcript_id AT2G41350.1  protein_id AT2G41350.1p  transcript_id AT2G41350.1  
At2g41360	chr2:017234374	0.0	W/17234374-17235396,17235677-17235734,17235874-17235956	AT2G41360.1  CDS  gene_syn F13H10.9, F13H10_9  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT2G44630.1); Has 346 Blast hits to 337 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 340; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G41360.1p  transcript_id AT2G41360.1  protein_id AT2G41360.1p  transcript_id AT2G41360.1  
At2g41370	chr2:017239718	0.0	C/17239718-17240203,17238019-17239008	AT2G41370.1  CDS  gene_syn BLADE ON PETIOLE2, BOP2, F13H10.8, F13H10_8  gene BOP2  function Encodes a cytoplasmic and nuclear-localized NPR1 like protein with BTB/POZ domain and ankyrin repeats. Interacts with BOP1 and appears to be genetically redundant with BOP1.bop1/bop2 double mutants have longer leaves, often with leaflets on the petiole, asymmetric flowers with extra organs and no nectaries. Also defective in floral organ abs cission.  go_component nucleus|GO:0005634|15805484|IDA  go_component cytoplasm|GO:0005737|15805484|IDA  go_process polarity specification of adaxial/abaxial axis|GO:0009944|17601823|IGI  go_process proximal/distal pattern formation|GO:0009954|15805484|IGI  go_process floral organ abscission|GO:0010227|15805484|IGI  go_process nectary development|GO:0010254|18339677|IGI  go_process flower morphogenesis|GO:0048439|15805484|IGI  go_function protein binding|GO:0005515|15805484|IPI  go_function protein binding|GO:0005515||ISS  product BOP2 (BLADE ON PETIOLE2); protein binding  note BLADE ON PETIOLE2 (BOP2); FUNCTIONS IN: protein binding; INVOLVED IN: flower morphogenesis, floral organ abscission, proximal/distal pattern formation, nectary development, polarity specification of adaxial/abaxial axis; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: BOP1 (BLADE ON PETIOLE 1); protein binding (TAIR:AT3G57130.1); Has 5149 Blast hits to 4159 proteins in 301 species: Archae - 16; Bacteria - 346; Metazoa - 2391; Fungi - 181; Plants - 698; Viruses - 70; Other Eukaryotes - 1447 (source: NCBI BLink).  protein_id AT2G41370.1p  transcript_id AT2G41370.1  protein_id AT2G41370.1p  transcript_id AT2G41370.1  
At2g41380	chr2:017251981	0.0	W/17251981-17252130,17252227-17252886	AT2G41380.1  CDS  gene_syn F13H10.7, F13H10_7  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function methyltransferase activity|GO:0008168||IEA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  product embryo-abundant protein-related  note embryo-abundant protein-related; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: embryo-abundant protein-related (TAIR:AT5G10830.1); Has 853 Blast hits to 849 proteins in 286 species: Archae - 4; Bacteria - 488; Metazoa - 70; Fungi - 107; Plants - 111; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT2G41380.1p  transcript_id AT2G41380.1  protein_id AT2G41380.1p  transcript_id AT2G41380.1  
At2g41390	chr2:017257416	0.0	W/17257416-17257862	AT2G41390.1  CDS  gene_syn F13H10.6, F13H10_6  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41400.1); Has 21 Blast hits to 21 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G41390.1p  transcript_id AT2G41390.1  protein_id AT2G41390.1p  transcript_id AT2G41390.1  
At2g41391	chr2:017258352	0.0	W/17258352-17258612	AT2G41391.1  pseudogenic_transcript  pseudo  function Pseudogene of AT2G41380; embryo-abundant protein-related  
At2g41400	chr2:017259509	0.0	W/17259509-17259961	AT2G41400.1  CDS  gene_syn F13H10.5, F13H10_5  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41390.1); Has 21 Blast hits to 21 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G41400.1p  transcript_id AT2G41400.1  protein_id AT2G41400.1p  transcript_id AT2G41400.1  
At2g41410	chr2:017262085	0.0	C/17262085-17262735	AT2G41410.1  CDS  gene_syn F13H10.4, F13H10_4  go_component plasma membrane|GO:0005886|17317660|IDA  go_function calcium ion binding|GO:0005509||IEA  go_function calcium ion binding|GO:0005509||ISS  product calmodulin, putative  note calmodulin, putative; FUNCTIONS IN: calcium ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin, putative (TAIR:AT3G10190.1); Has 10198 Blast hits to 7608 proteins in 1056 species: Archae - 0; Bacteria - 38; Metazoa - 4396; Fungi - 1728; Plants - 2446; Viruses - 0; Other Eukaryotes - 1590 (source: NCBI BLink).  protein_id AT2G41410.1p  transcript_id AT2G41410.1  protein_id AT2G41410.1p  transcript_id AT2G41410.1  
At2g41415	chr2:017264961	0.0	C/17264961-17265024,17264698-17264858	AT2G41415.1  CDS  function Encodes a Maternally expressed gene (MEG) family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10747.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G41415.1p  transcript_id AT2G41415.1  protein_id AT2G41415.1p  transcript_id AT2G41415.1  
At2g41420	chr2:017267828	0.0	C/17267828-17267873,17267478-17267682,17266794-17266839	AT2G41420.1  CDS  gene_syn F13H10.3, F13H10_3  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process G-protein coupled receptor protein signaling pathway|GO:0007186||IEA  product proline-rich family protein  note proline-rich family protein; INVOLVED IN: G-protein coupled receptor protein signaling pathway; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: XYPPX repeat (InterPro:IPR006031), Molluscan rhodopsin C-terminal tail (InterPro:IPR006030); Has 11702 Blast hits to 5282 proteins in 487 species: Archae - 8; Bacteria - 949; Metazoa - 4565; Fungi - 1406; Plants - 2226; Viruses - 439; Other Eukaryotes - 2109 (source: NCBI BLink).  protein_id AT2G41420.1p  transcript_id AT2G41420.1  protein_id AT2G41420.1p  transcript_id AT2G41420.1  
At2g41430	chr2:017269736	0.0	W/17269736-17270075,17270163-17270314	AT2G41430.1  CDS  gene_syn CID1, DEHYDRATION-INDUCED PROTEIN, EARLY RESPONSIVE TO DEHYDRATION 15, ERD15, LIGHT STRESS-REGULATED 1, LSR1, T26J13.2  gene ERD15  function Encodes hydrophilic protein lacking Cys residues that is expressed in response to drought stress, light stress and treatment with plant-growth-promoting rhizobacteria (Paenibacillus polymyxa), possibly revealing a connection between responses to biotic and abiotic stress. Also identified as a CTC Interacting Domain (CID) protein in a yeast two hybrid screen using the PAB2 protein as bait. Contains PAM2 like domain which mediates interaction with PABC domain in PAB2.  go_component cytoplasm|GO:0005737|11683875|ISS  go_process response to water deprivation|GO:0009414|7846179|NAS  go_process response to water deprivation|GO:0009414|8075396|IEP  go_process response to bacterium|GO:0009617|10550893|IEP  go_process response to high light intensity|GO:0009644|11683875|IEP  go_function protein binding|GO:0005515|15650869|IPI  product ERD15 (EARLY RESPONSIVE TO DEHYDRATION 15); protein binding  note EARLY RESPONSIVE TO DEHYDRATION 15 (ERD15); FUNCTIONS IN: protein binding; INVOLVED IN: response to high light intensity, response to water deprivation, response to bacterium; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14270.2); Has 124 Blast hits to 124 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G41430.1p  transcript_id AT2G41430.1  protein_id AT2G41430.1p  transcript_id AT2G41430.1  
At2g41430	chr2:017269736	0.0	W/17269736-17270075,17270163-17270314	AT2G41430.2  CDS  gene_syn CID1, DEHYDRATION-INDUCED PROTEIN, EARLY RESPONSIVE TO DEHYDRATION 15, ERD15, LIGHT STRESS-REGULATED 1, LSR1, T26J13.2  gene ERD15  function Encodes hydrophilic protein lacking Cys residues that is expressed in response to drought stress, light stress and treatment with plant-growth-promoting rhizobacteria (Paenibacillus polymyxa), possibly revealing a connection between responses to biotic and abiotic stress. Also identified as a CTC Interacting Domain (CID) protein in a yeast two hybrid screen using the PAB2 protein as bait. Contains PAM2 like domain which mediates interaction with PABC domain in PAB2.  go_component cytoplasm|GO:0005737|11683875|ISS  go_process response to water deprivation|GO:0009414|7846179|NAS  go_process response to water deprivation|GO:0009414|8075396|IEP  go_process response to bacterium|GO:0009617|10550893|IEP  go_process response to high light intensity|GO:0009644|11683875|IEP  go_function protein binding|GO:0005515|15650869|IPI  product ERD15 (EARLY RESPONSIVE TO DEHYDRATION 15); protein binding  note EARLY RESPONSIVE TO DEHYDRATION 15 (ERD15); FUNCTIONS IN: protein binding; INVOLVED IN: response to high light intensity, response to water deprivation, response to bacterium; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14270.2); Has 124 Blast hits to 124 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G41430.2p  transcript_id AT2G41430.2  protein_id AT2G41430.2p  transcript_id AT2G41430.2  
At2g41430	chr2:017269736	0.0	W/17269736-17270075,17270163-17270314	AT2G41430.4  CDS  gene_syn CID1, DEHYDRATION-INDUCED PROTEIN, EARLY RESPONSIVE TO DEHYDRATION 15, ERD15, LIGHT STRESS-REGULATED 1, LSR1, T26J13.2  gene ERD15  function Encodes hydrophilic protein lacking Cys residues that is expressed in response to drought stress, light stress and treatment with plant-growth-promoting rhizobacteria (Paenibacillus polymyxa), possibly revealing a connection between responses to biotic and abiotic stress. Also identified as a CTC Interacting Domain (CID) protein in a yeast two hybrid screen using the PAB2 protein as bait. Contains PAM2 like domain which mediates interaction with PABC domain in PAB2.  go_component cytoplasm|GO:0005737|11683875|ISS  go_process response to water deprivation|GO:0009414|7846179|NAS  go_process response to water deprivation|GO:0009414|8075396|IEP  go_process response to bacterium|GO:0009617|10550893|IEP  go_process response to high light intensity|GO:0009644|11683875|IEP  go_function protein binding|GO:0005515|15650869|IPI  product ERD15 (EARLY RESPONSIVE TO DEHYDRATION 15); protein binding  note EARLY RESPONSIVE TO DEHYDRATION 15 (ERD15); FUNCTIONS IN: protein binding; INVOLVED IN: response to high light intensity, response to water deprivation, response to bacterium; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14270.2); Has 124 Blast hits to 124 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G41430.4p  transcript_id AT2G41430.4  protein_id AT2G41430.4p  transcript_id AT2G41430.4  
At2g41430	chr2:017269736	0.0	W/17269736-17270098	AT2G41430.3  CDS  gene_syn CID1, DEHYDRATION-INDUCED PROTEIN, EARLY RESPONSIVE TO DEHYDRATION 15, ERD15, LIGHT STRESS-REGULATED 1, LSR1, T26J13.2  gene ERD15  function Encodes hydrophilic protein lacking Cys residues that is expressed in response to drought stress, light stress and treatment with plant-growth-promoting rhizobacteria (Paenibacillus polymyxa), possibly revealing a connection between responses to biotic and abiotic stress. Also identified as a CTC Interacting Domain (CID) protein in a yeast two hybrid screen using the PAB2 protein as bait. Contains PAM2 like domain which mediates interaction with PABC domain in PAB2.  go_component cytoplasm|GO:0005737|11683875|ISS  go_process response to water deprivation|GO:0009414|7846179|NAS  go_process response to water deprivation|GO:0009414|8075396|IEP  go_process response to bacterium|GO:0009617|10550893|IEP  go_process response to high light intensity|GO:0009644|11683875|IEP  go_function protein binding|GO:0005515|15650869|IPI  product ERD15 (EARLY RESPONSIVE TO DEHYDRATION 15); protein binding  note EARLY RESPONSIVE TO DEHYDRATION 15 (ERD15); FUNCTIONS IN: protein binding; INVOLVED IN: response to high light intensity, response to water deprivation, response to bacterium; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14270.2); Has 124 Blast hits to 124 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G41430.3p  transcript_id AT2G41430.3  protein_id AT2G41430.3p  transcript_id AT2G41430.3  
At2g41440	chr2:017271792	0.0	W/17271792-17271886,17272116-17272167,17272254-17272291,17272368-17272464,17272554-17272595,17272865-17272938,17273336-17273378,17273457-17273536,17273632-17273773,17273859-17274065	AT2G41440.1  CDS  gene_syn T26J13.3, T26J13_3  product unknown protein  note unknown protein; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41470.1); Has 17 Blast hits to 16 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G41440.1p  transcript_id AT2G41440.1  protein_id AT2G41440.1p  transcript_id AT2G41440.1  
At2g41440	chr2:017272895	0.0	W/17272895-17272938,17273336-17273378,17273457-17273536,17273632-17273773,17273859-17274065	AT2G41440.2  CDS  gene_syn T26J13.3, T26J13_3  product unknown protein  note unknown protein; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41470.1); Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G41440.2p  transcript_id AT2G41440.2  protein_id AT2G41440.2p  transcript_id AT2G41440.2  
At2g41445	chr2:017275591	0.0	W/17275591-17275679,17276021-17276063,17276141-17276181,17276279-17276378,17276502-17276552,17276678-17276742,17276842-17276884,17276973-17277052,17277159-17277330	AT2G41445.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41470.1); Has 16 Blast hits to 15 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G41445.1p  transcript_id AT2G41445.1  protein_id AT2G41445.1p  transcript_id AT2G41445.1  
At2g41450	chr2:017278190	0.0	W/17278190-17278238,17278325-17278426,17278632-17278726,17278833-17278930,17279105-17279156,17279361-17279453,17279700-17279810,17279945-17280218,17280338-17280756,17280836-17280945,17281044-17281102,17281182-17281369,17281449-17281637	AT2G41450.1  CDS  gene_syn T26J13.4, T26J13_4  go_component intracellular|GO:0005622||IEA  go_process metabolic process|GO:0008152||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_function N-acetyltransferase activity|GO:0008080||ISS  product N-acetyltransferase  note N-acetyltransferase; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: transcription coactivator (TAIR:AT4G03130.1); Has 369 Blast hits to 367 proteins in 106 species: Archae - 0; Bacteria - 2; Metazoa - 232; Fungi - 41; Plants - 44; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT2G41450.1p  transcript_id AT2G41450.1  protein_id AT2G41450.1p  transcript_id AT2G41450.1  
At2g41450	chr2:017278670	0.0	W/17278670-17278726,17278833-17278930,17279105-17279156,17279361-17279453,17279700-17279810,17279945-17280218,17280338-17280756,17280836-17280945,17281044-17281102,17281182-17281369,17281449-17281637	AT2G41450.2  CDS  gene_syn T26J13.4, T26J13_4  go_component intracellular|GO:0005622||IEA  go_process metabolic process|GO:0008152||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_function N-acetyltransferase activity|GO:0008080||ISS  product N-acetyltransferase  note N-acetyltransferase; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: transcription coactivator (TAIR:AT4G03130.1); Has 363 Blast hits to 361 proteins in 104 species: Archae - 0; Bacteria - 2; Metazoa - 232; Fungi - 35; Plants - 44; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT2G41450.2p  transcript_id AT2G41450.2  protein_id AT2G41450.2p  transcript_id AT2G41450.2  
At2g41451	chr2:017282957	0.0	W/17282957-17283244,17283335-17283484,17283589-17283641,17283889-17283997,17284089-17284223,17284312-17284356,17284447-17284634,17284723-17284864,17284944-17285078,17285154-17285264	AT2G41451.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57200.1); Has 53 Blast hits to 53 proteins in 20 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G41451.1p  transcript_id AT2G41451.1  protein_id AT2G41451.1p  transcript_id AT2G41451.1  
At2g41460	chr2:017285731	0.0	W/17285731-17285783,17286119-17286299,17286397-17286491,17286618-17286697,17286964-17287182,17287276-17287598,17287700-17287810,17287892-17288029,17288126-17288173,17288257-17288337,17288415-17288574,17288648-17288769	AT2G41460.1  CDS  gene_syn ARP, T26J13.5, T26J13_5  gene ARP  function apurinic endonuclease-redox protein. It functions as an apurinic/apyrimidinic class II endonuclease, and is involved in DNA repair.  go_component intracellular|GO:0005622||IEA  go_process positive regulation of transcription|GO:0045941|7512729|TAS  go_function DNA-(apurinic or apyrimidinic site) lyase activity|GO:0003906|7512729|IDA  product ARP; DNA-(apurinic or apyrimidinic site) lyase  note ARP; FUNCTIONS IN: DNA-(apurinic or apyrimidinic site) lyase activity; INVOLVED IN: positive regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034), AP endonuclease, family 1 (InterPro:IPR000097), Exodeoxyribonuclease III xth (InterPro:IPR004808), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60950.1); Has 6640 Blast hits to 6632 proteins in 1295 species: Archae - 54; Bacteria - 2900; Metazoa - 750; Fungi - 314; Plants - 89; Viruses - 2; Other Eukaryotes - 2531 (source: NCBI BLink).  protein_id AT2G41460.1p  transcript_id AT2G41460.1  protein_id AT2G41460.1p  transcript_id AT2G41460.1  
At2g41460	chr2:017285731	0.0	W/17285731-17285783,17286119-17286299,17286397-17286491,17286618-17286697,17286964-17287182,17287276-17287598,17287700-17287810,17287892-17288041	AT2G41460.2  CDS  gene_syn ARP, T26J13.5, T26J13_5  gene ARP  function apurinic endonuclease-redox protein. It functions as an apurinic/apyrimidinic class II endonuclease, and is involved in DNA repair.  go_component intracellular|GO:0005622||IEA  go_process positive regulation of transcription|GO:0045941|7512729|TAS  go_function DNA-(apurinic or apyrimidinic site) lyase activity|GO:0003906|7512729|IDA  product ARP; DNA-(apurinic or apyrimidinic site) lyase  note ARP; FUNCTIONS IN: DNA-(apurinic or apyrimidinic site) lyase activity; INVOLVED IN: positive regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034), AP endonuclease, family 1 (InterPro:IPR000097), Exodeoxyribonuclease III xth (InterPro:IPR004808), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61030.1); Has 2891 Blast hits to 2885 proteins in 891 species: Archae - 54; Bacteria - 1539; Metazoa - 256; Fungi - 165; Plants - 80; Viruses - 2; Other Eukaryotes - 795 (source: NCBI BLink).  protein_id AT2G41460.2p  transcript_id AT2G41460.2  protein_id AT2G41460.2p  transcript_id AT2G41460.2  
At2g41470	chr2:017293718	0.0	C/17293718-17293749,17293490-17293523,17293366-17293403,17293183-17293279,17293046-17293078,17292901-17292962,17292540-17292576,17292383-17292462,17292151-17292295,17291899-17292062,17291599-17291641,17291481-17291521,17291305-17291401,17291178-17291207,17290707-17290783,17290298-17290343,17290141-17290220,17289952-17290060	AT2G41470.1  CDS  gene_syn T26J13.6, T26J13_6  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41440.1); Has 14 Blast hits to 14 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G41470.1p  transcript_id AT2G41470.1  protein_id AT2G41470.1p  transcript_id AT2G41470.1  
At2g41473	chr2:017294453	0.0	C/17294453-17294728	AT2G41473.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G17710.1).  protein_id AT2G41473.1p  transcript_id AT2G41473.1  protein_id AT2G41473.1p  transcript_id AT2G41473.1  
At2g41475	chr2:017296201	0.0	C/17296201-17296329,17296019-17296126,17295259-17295561	AT2G41475.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Embryo-specific 3 (InterPro:IPR010417); BEST Arabidopsis thaliana protein match is: embryo-specific protein-related (TAIR:AT5G62200.1); Has 60 Blast hits to 60 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G41475.1p  transcript_id AT2G41475.1  protein_id AT2G41475.1p  transcript_id AT2G41475.1  
At2g41480	chr2:017298469	0.0	C/17298469-17298729,17298199-17298378,17297935-17298097,17296986-17297407	AT2G41480.1  CDS  gene_syn T26J13.7, T26J13_7  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product electron carrier/ heme binding / peroxidase  note electron carrier/ heme binding / peroxidase; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; EXPRESSED IN: root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT5G64120.1); Has 2602 Blast hits to 2587 proteins in 148 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 18; Plants - 2558; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT2G41480.1p  transcript_id AT2G41480.1  protein_id AT2G41480.1p  transcript_id AT2G41480.1  
At2g41490	chr2:017301762	0.0	W/17301762-17302144,17302223-17302310,17302399-17302490,17302580-17302698,17302807-17302922,17303012-17303139,17303234-17303320,17303485-17303545,17303640-17303680,17303763-17303883,17303971-17304030	AT2G41490.1  CDS  gene_syn GPT, T26J13.8, T26J13_8, UDP-GLCNAC%3ADOLICHOL+PHOSPHATE+GLCNAC-1-P+TRANSFERASE  gene GPT  function UDP-GlcNAc:dolichol phosphate N-acetylglucosamine-1-phosphate transferase  go_function UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity|GO:0003975|10517826|IMP  go_function UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity|GO:0003975||ISS  product GPT (UDP-GLCNAC%3ADOLICHOL+PHOSPHATE+GLCNAC-1-P+TRANSFERASE); UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase  note UDP-GLCNAC%3ADOLICHOL+PHOSPHATE+GLCNAC-1-P+TRANSFERASE (GPT); FUNCTIONS IN: UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 4, conserved region (InterPro:IPR018481); BEST Arabidopsis thaliana protein match is: UDP-GlcNAc:dolichol phosphate N-acetylglucosamine-1-phosphate transferase, putative (TAIR:AT3G57220.1); Has 3950 Blast hits to 3949 proteins in 1210 species: Archae - 86; Bacteria - 2688; Metazoa - 110; Fungi - 83; Plants - 32; Viruses - 0; Other Eukaryotes - 951 (source: NCBI BLink).  protein_id AT2G41490.1p  transcript_id AT2G41490.1  protein_id AT2G41490.1p  transcript_id AT2G41490.1  
At2g41500	chr2:017306765	0.0	C/17306765-17306855,17305777-17306503,17304914-17305370,17304614-17304811,17304319-17304510	AT2G41500.1  CDS  gene_syn EMB2776, LACHESIS, LIS, T26J13.9, T26J13_9  gene EMB2776  function Encodes LACHESIS (LIS), a protein with seven WD40 repeats. LIS is homologous to the yeast splicing factor PRP4 which is associated with the U4/U6 complex of the spliceosome. LIS is involved in a mechanism that prevents accessory cells from adopting gametic cell fate: lis mutant forms supernumerary egg cells.  go_component spliceosome|GO:0005681|17326723|ISS  go_component nuclear speck|GO:0016607|18702672|IDA  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|17326723|ISS  go_process cell fate determination|GO:0001709|17326723|IMP  go_process embryo sac egg cell differentiation|GO:0009560|17326723|IMP  go_function nucleotide binding|GO:0000166||ISS  product EMB2776; nucleotide binding  note EMB2776; FUNCTIONS IN: nucleotide binding; INVOLVED IN: embryo sac egg cell differentiation, nuclear mRNA splicing, via spliceosome, cell fate determination; LOCATED IN: nuclear speck, CUL4 RING ubiquitin ligase complex, spliceosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), Pre-mRNA processing factor 4 (PRP4) like (InterPro:IPR014906), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), Splicing factor motif (InterPro:IPR003648); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT2G05720.1); Has 71387 Blast hits to 26864 proteins in 694 species: Archae - 66; Bacteria - 7941; Metazoa - 32836; Fungi - 13702; Plants - 6603; Viruses - 15; Other Eukaryotes - 10224 (source: NCBI BLink).  protein_id AT2G41500.1p  transcript_id AT2G41500.1  protein_id AT2G41500.1p  transcript_id AT2G41500.1  
At2g41510	chr2:017314626	0.0	W/17314626-17315292,17315524-17315651,17315740-17316000,17316104-17316366,17316453-17316861	AT2G41510.1  CDS  gene_syn ATCKX1, CKX1, CYTOKININ OXIDASE/DEHYDROGENASE 1, T32G6.3, T32G6_3  gene CKX1  function It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component vacuole|GO:0005773|14555694|IDA  go_process cytokinin catabolic process|GO:0009823|17363254|IMP  go_process cytokinin catabolic process|GO:0009823||ISS  go_process meristem development|GO:0048507|17363254|IMP  go_function cytokinin dehydrogenase activity|GO:0019139|14555694|IMP  go_function cytokinin dehydrogenase activity|GO:0019139||ISS  product CKX1 (CYTOKININ OXIDASE/DEHYDROGENASE 1); cytokinin dehydrogenase  note CYTOKININ OXIDASE/DEHYDROGENASE 1 (CKX1); FUNCTIONS IN: cytokinin dehydrogenase activity; INVOLVED IN: N-terminal protein myristoylation, meristem development, cytokinin catabolic process; LOCATED IN: vacuole; EXPRESSED IN: shoot apex, lateral root, hypocotyl, flower, root; CONTAINS InterPro DOMAIN/s: Cytokinin dehydrogenase 1, FAD and cytokinin binding (InterPro:IPR015345), FAD-binding, type 2 (InterPro:IPR016166), Oxygen oxidoreductase covalent FAD-binding site (InterPro:IPR006093), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: CKX6 (CYTOKININ OXIDASE/DEHYDROGENASE 6); cytokinin dehydrogenase (TAIR:AT3G63440.1); Has 4105 Blast hits to 4102 proteins in 837 species: Archae - 81; Bacteria - 2119; Metazoa - 121; Fungi - 836; Plants - 333; Viruses - 0; Other Eukaryotes - 615 (source: NCBI BLink).  protein_id AT2G41510.1p  transcript_id AT2G41510.1  protein_id AT2G41510.1p  transcript_id AT2G41510.1  
At2g41520	chr2:017317662	0.0	W/17317662-17317950,17318046-17319432,17319521-17319760,17320057-17320186,17320359-17320511,17320591-17320829,17320929-17320998,17321149-17321155,17321249-17321355,17321460-17321463,17321738-17321966,17322105-17322183,17322269-17322403,17322541-17322705	AT2G41520.2  CDS  gene_syn T32G6.4, T32G6_4  go_function binding|GO:0005488||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: binding, heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Tetratricopeptide region (InterPro:IPR013026), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT5G12430.1); Has 15349 Blast hits to 14278 proteins in 1763 species: Archae - 94; Bacteria - 4531; Metazoa - 4046; Fungi - 1445; Plants - 1269; Viruses - 9; Other Eukaryotes - 3955 (source: NCBI BLink).  protein_id AT2G41520.2p  transcript_id AT2G41520.2  protein_id AT2G41520.2p  transcript_id AT2G41520.2  
At2g41520	chr2:017317662	0.0	W/17317662-17317950,17318046-17319432,17319521-17319760,17320057-17320186,17320359-17320511,17320591-17320829,17320929-17320998,17321149-17321355,17321734-17321966,17322105-17322183,17322269-17322403,17322541-17322705	AT2G41520.1  CDS  gene_syn T32G6.4, T32G6_4  go_function binding|GO:0005488||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: binding, heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Tetratricopeptide region (InterPro:IPR013026), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT5G12430.1); Has 17372 Blast hits to 15017 proteins in 1767 species: Archae - 94; Bacteria - 4697; Metazoa - 5029; Fungi - 1713; Plants - 1513; Viruses - 9; Other Eukaryotes - 4317 (source: NCBI BLink).  protein_id AT2G41520.1p  transcript_id AT2G41520.1  protein_id AT2G41520.1p  transcript_id AT2G41520.1  
At2g41530	chr2:017325284	0.0	C/17325284-17325430,17324820-17324937,17324685-17324732,17324348-17324544,17324072-17324170,17323925-17323990,17323656-17323835	AT2G41530.1  CDS  gene_syn ARABIDOPSIS THALIANA S-FORMYLGLUTATHIONE HYDROLASE, ATSFGH, S-FORMYLGLUTATHIONE HYDROLASE, SFGH, T32G6.5, T32G6_5  gene SFGH  function Encodes a protein with S-formylglutathione hydrolase activity.  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function hydrolase activity, acting on ester bonds|GO:0016788||ISS  go_function S-formylglutathione hydrolase activity|GO:0018738|11888210|IDA  product SFGH (S-FORMYLGLUTATHIONE HYDROLASE); S-formylglutathione hydrolase/ hydrolase, acting on ester bonds  note S-FORMYLGLUTATHIONE HYDROLASE (SFGH); FUNCTIONS IN: hydrolase activity, acting on ester bonds, S-formylglutathione hydrolase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: apoplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Putative esterase (InterPro:IPR000801), S-formylglutathione hydrolase (InterPro:IPR014186); Has 1867 Blast hits to 1866 proteins in 689 species: Archae - 2; Bacteria - 1272; Metazoa - 137; Fungi - 87; Plants - 32; Viruses - 0; Other Eukaryotes - 337 (source: NCBI BLink).  protein_id AT2G41530.1p  transcript_id AT2G41530.1  protein_id AT2G41530.1p  transcript_id AT2G41530.1  
At2g41540	chr2:017326801	0.0	W/17326801-17327455,17327557-17327778,17327857-17328104,17328197-17328336,17328531-17328654	AT2G41540.1  CDS  gene_syn GPDHC1, T32G6.6, T32G6_6  gene GPDHC1  function Encodes a protein with NAD-dependent glycerol-3-phosphate (G3P) dehydrogenase which was shown to complement an Escherichia coli strain: BB20-14, auxotrophic for glycerol/G3P due to a loss-of-function mutation in the gpsA gene.  go_component cytosol|GO:0005829|16415206|IDA  go_component glycerol-3-phosphate dehydrogenase complex|GO:0009331||ISS  go_process glycerol-3-phosphate metabolic process|GO:0006072||ISS  go_process response to flooding|GO:0009413|16415206|IEP  go_process response to water deprivation|GO:0009414|16415206|IEP  go_process response to salt stress|GO:0009651|16415206|IEP  go_process response to abscisic acid stimulus|GO:0009737|16415206|IEP  go_function glycerol-3-phosphate dehydrogenase (NAD+) activity|GO:0004367|16415206|IGI  go_function glycerol-3-phosphate dehydrogenase (NAD+) activity|GO:0004367||ISS  go_function NAD or NADH binding|GO:0051287|16415206|TAS  product GPDHC1; NAD or NADH binding / glycerol-3-phosphate dehydrogenase (NAD+)  note GPDHC1; FUNCTIONS IN: glycerol-3-phosphate dehydrogenase (NAD+) activity, NAD or NADH binding; INVOLVED IN: response to salt stress, response to flooding, response to water deprivation, glycerol-3-phosphate metabolic process, response to abscisic acid stimulus; LOCATED IN: cytosol, glycerol-3-phosphate dehydrogenase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrogenase, multihelical (InterPro:IPR013328), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), NAD(P)-binding (InterPro:IPR016040), NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal (InterPro:IPR006109), NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal (InterPro:IPR011128), NAD-dependent glycerol-3-phosphate dehydrogenase (InterPro:IPR006168); BEST Arabidopsis thaliana protein match is: NAD or NADH binding / binding / catalytic/ coenzyme binding / glycerol-3-phosphate dehydrogenase (NAD+)/ oxidoreductase/ oxidoreductase, acting on CH-OH group of donors / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor (TAIR:AT3G07690.1); Has 3064 Blast hits to 3064 proteins in 883 species: Archae - 10; Bacteria - 1451; Metazoa - 397; Fungi - 92; Plants - 94; Viruses - 0; Other Eukaryotes - 1020 (source: NCBI BLink).  protein_id AT2G41540.1p  transcript_id AT2G41540.1  protein_id AT2G41540.1p  transcript_id AT2G41540.1  
At2g41540	chr2:017326801	0.0	W/17326801-17327455,17327557-17327778,17327857-17328104,17328197-17328336,17328531-17328654	AT2G41540.2  CDS  gene_syn GPDHC1, T32G6.6, T32G6_6  gene GPDHC1  function Encodes a protein with NAD-dependent glycerol-3-phosphate (G3P) dehydrogenase which was shown to complement an Escherichia coli strain: BB20-14, auxotrophic for glycerol/G3P due to a loss-of-function mutation in the gpsA gene.  go_component cytosol|GO:0005829|16415206|IDA  go_component glycerol-3-phosphate dehydrogenase complex|GO:0009331||ISS  go_process glycerol-3-phosphate metabolic process|GO:0006072||ISS  go_process response to flooding|GO:0009413|16415206|IEP  go_process response to water deprivation|GO:0009414|16415206|IEP  go_process response to salt stress|GO:0009651|16415206|IEP  go_process response to abscisic acid stimulus|GO:0009737|16415206|IEP  go_function glycerol-3-phosphate dehydrogenase (NAD+) activity|GO:0004367|16415206|IGI  go_function glycerol-3-phosphate dehydrogenase (NAD+) activity|GO:0004367||ISS  go_function NAD or NADH binding|GO:0051287|16415206|TAS  product GPDHC1; NAD or NADH binding / glycerol-3-phosphate dehydrogenase (NAD+)  note GPDHC1; FUNCTIONS IN: glycerol-3-phosphate dehydrogenase (NAD+) activity, NAD or NADH binding; INVOLVED IN: response to salt stress, response to flooding, response to water deprivation, glycerol-3-phosphate metabolic process, response to abscisic acid stimulus; LOCATED IN: cytosol, glycerol-3-phosphate dehydrogenase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrogenase, multihelical (InterPro:IPR013328), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), NAD(P)-binding (InterPro:IPR016040), NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal (InterPro:IPR006109), NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal (InterPro:IPR011128), NAD-dependent glycerol-3-phosphate dehydrogenase (InterPro:IPR006168); BEST Arabidopsis thaliana protein match is: NAD or NADH binding / binding / catalytic/ coenzyme binding / glycerol-3-phosphate dehydrogenase (NAD+)/ oxidoreductase/ oxidoreductase, acting on CH-OH group of donors / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor (TAIR:AT3G07690.1); Has 3064 Blast hits to 3064 proteins in 883 species: Archae - 10; Bacteria - 1451; Metazoa - 397; Fungi - 92; Plants - 94; Viruses - 0; Other Eukaryotes - 1020 (source: NCBI BLink).  protein_id AT2G41540.2p  transcript_id AT2G41540.2  protein_id AT2G41540.2p  transcript_id AT2G41540.2  
At2g41540	chr2:017326801	0.0	W/17326801-17327455,17327557-17327778,17327857-17328104,17328197-17328336,17328531-17328654	AT2G41540.3  CDS  gene_syn GPDHC1, T32G6.6, T32G6_6  gene GPDHC1  function Encodes a protein with NAD-dependent glycerol-3-phosphate (G3P) dehydrogenase which was shown to complement an Escherichia coli strain: BB20-14, auxotrophic for glycerol/G3P due to a loss-of-function mutation in the gpsA gene.  go_component cytosol|GO:0005829|16415206|IDA  go_component glycerol-3-phosphate dehydrogenase complex|GO:0009331||ISS  go_process glycerol-3-phosphate metabolic process|GO:0006072||ISS  go_process response to flooding|GO:0009413|16415206|IEP  go_process response to water deprivation|GO:0009414|16415206|IEP  go_process response to salt stress|GO:0009651|16415206|IEP  go_process response to abscisic acid stimulus|GO:0009737|16415206|IEP  go_function glycerol-3-phosphate dehydrogenase (NAD+) activity|GO:0004367|16415206|IGI  go_function glycerol-3-phosphate dehydrogenase (NAD+) activity|GO:0004367||ISS  go_function NAD or NADH binding|GO:0051287|16415206|TAS  product GPDHC1; NAD or NADH binding / glycerol-3-phosphate dehydrogenase (NAD+)  note GPDHC1; FUNCTIONS IN: glycerol-3-phosphate dehydrogenase (NAD+) activity, NAD or NADH binding; INVOLVED IN: response to salt stress, response to flooding, response to water deprivation, glycerol-3-phosphate metabolic process, response to abscisic acid stimulus; LOCATED IN: cytosol, glycerol-3-phosphate dehydrogenase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrogenase, multihelical (InterPro:IPR013328), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), NAD(P)-binding (InterPro:IPR016040), NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal (InterPro:IPR006109), NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal (InterPro:IPR011128), NAD-dependent glycerol-3-phosphate dehydrogenase (InterPro:IPR006168); BEST Arabidopsis thaliana protein match is: NAD or NADH binding / binding / catalytic/ coenzyme binding / glycerol-3-phosphate dehydrogenase (NAD+)/ oxidoreductase/ oxidoreductase, acting on CH-OH group of donors / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor (TAIR:AT3G07690.1); Has 3064 Blast hits to 3064 proteins in 883 species: Archae - 10; Bacteria - 1451; Metazoa - 397; Fungi - 92; Plants - 94; Viruses - 0; Other Eukaryotes - 1020 (source: NCBI BLink).  protein_id AT2G41540.3p  transcript_id AT2G41540.3  protein_id AT2G41540.3p  transcript_id AT2G41540.3  
At2g41550	chr2:017330794	0.0	C/17330794-17330830,17330635-17330712,17330375-17330562,17330078-17330290,17329086-17329997	AT2G41550.1  CDS  gene_syn T32G6.7, T32G6_7  go_process transcription termination|GO:0006353||IEA  go_function transcription termination factor activity|GO:0003715||IEA  go_component cellular_component|GO:0005575||ND  product transcription termination factor  note transcription termination factor; FUNCTIONS IN: transcription termination factor activity; INVOLVED IN: transcription termination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Rho termination factor, N-terminal (InterPro:IPR011112); Has 935 Blast hits to 615 proteins in 170 species: Archae - 6; Bacteria - 230; Metazoa - 328; Fungi - 160; Plants - 13; Viruses - 2; Other Eukaryotes - 196 (source: NCBI BLink).  protein_id AT2G41550.1p  transcript_id AT2G41550.1  protein_id AT2G41550.1p  transcript_id AT2G41550.1  
At2g41560	chr2:017337009	0.0	C/17337009-17337179,17335576-17335630,17333538-17335471,17333286-17333441,17333024-17333195,17332640-17332938,17332256-17332561	AT2G41560.1  CDS  gene_syn ACA4, AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4, T32G6.8, T32G6_8  gene ACA4  function encodes a calmodulin-regulated Ca(2+)-ATPase that improves salt tolerance in yeast. localized to the vacuole.  go_component plant-type vacuole|GO:0000325|16618929|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component plant-type vacuole|GO:0000325|11115896|IDA  go_component vacuole|GO:0005773|12805592|TAS  go_component vacuolar membrane|GO:0005774|16618929|IDA  go_process response to osmotic stress|GO:0006970|11115896|IGI  go_process response to nematode|GO:0009624|16478044|IEP  go_process response to salt stress|GO:0009651|11115896|IGI  go_function calcium-transporting ATPase activity|GO:0005388|12805592|ISS  go_function calcium-transporting ATPase activity|GO:0005388||ISS  go_function calmodulin binding|GO:0005516|11115896|IDA  go_function calmodulin binding|GO:0005516|11782485|TAS  product ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4); calcium-transporting ATPase/ calmodulin binding  note AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4 (ACA4); FUNCTIONS IN: calmodulin binding, calcium-transporting ATPase activity; INVOLVED IN: response to salt stress, response to nematode, response to osmotic stress; LOCATED IN: vacuolar membrane, chloroplast, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, calcium-transporting, PMCA-type (InterPro:IPR006408), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068); BEST Arabidopsis thaliana protein match is: ACA11 (autoinhibited Ca2+-ATPase 11); calcium-transporting ATPase/ calmodulin binding (TAIR:AT3G57330.1); Has 25345 Blast hits to 19800 proteins in 1845 species: Archae - 508; Bacteria - 15317; Metazoa - 3406; Fungi - 1719; Plants - 1089; Viruses - 3; Other Eukaryotes - 3303 (source: NCBI BLink).  protein_id AT2G41560.1p  transcript_id AT2G41560.1  protein_id AT2G41560.1p  transcript_id AT2G41560.1  
At2g41570	chr2:017337737	0.0	W/17337737-17338993	AT2G41570.1  mRNA_TE_gene  pseudo  gene_syn T32G6.9, T32G6_9  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G16690.1); similar to 80C09_29 [Brassica rapa subsp. pekinensis] (GB:AAZ41840.1)  
At2g41580	chr2:017339804	0.0	W/17339804-17343088	AT2G41580.1  mRNA_TE_gene  pseudo  gene_syn T32G6.10, T32G6_10  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 4.7e-42 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)  
At2g41590	chr2:017343600	0.0	W/17343600-17344703	AT2G41590.1  CDS  gene_syn T32G6.11, T32G6_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, pollen tube; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25200.1); Has 148 Blast hits to 148 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G41590.1p  transcript_id AT2G41590.1  protein_id AT2G41590.1p  transcript_id AT2G41590.1  
At2g41600	chr2:017346588	0.0	C/17346588-17346701,17345989-17346330	AT2G41600.1  CDS  gene_syn T32G6.12, T32G6_12  go_component mitochondrial matrix|GO:0005759||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrial matrix; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial glycoprotein (InterPro:IPR003428); Has 20 Blast hits to 20 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G41600.1p  transcript_id AT2G41600.1  protein_id AT2G41600.1p  transcript_id AT2G41600.1  
At2g41600	chr2:017346588	0.0	C/17346588-17346701,17345989-17346330	AT2G41600.4  CDS  gene_syn T32G6.12, T32G6_12  go_component mitochondrial matrix|GO:0005759||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrial matrix; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial glycoprotein (InterPro:IPR003428); Has 20 Blast hits to 20 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G41600.4p  transcript_id AT2G41600.4  protein_id AT2G41600.4p  transcript_id AT2G41600.4  
At2g41600	chr2:017346588	0.0	C/17346588-17346701,17345993-17346330,17345597-17345768	AT2G41600.3  CDS  gene_syn T32G6.12, T32G6_12  go_component mitochondrial matrix|GO:0005759||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrial matrix; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial glycoprotein (InterPro:IPR003428); BEST Arabidopsis thaliana protein match is: mitochondrial glycoprotein family protein / MAM33 family protein (TAIR:AT1G80720.1); Has 139 Blast hits to 138 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 56; Plants - 62; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT2G41600.3p  transcript_id AT2G41600.3  protein_id AT2G41600.3p  transcript_id AT2G41600.3  
At2g41600	chr2:017346588	0.0	C/17346588-17346701,17345993-17346330,17345601-17345768,17344747-17344789	AT2G41600.5  CDS  gene_syn T32G6.12, T32G6_12  go_component mitochondrial matrix|GO:0005759||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrial matrix; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial glycoprotein (InterPro:IPR003428); BEST Arabidopsis thaliana protein match is: mitochondrial glycoprotein family protein / MAM33 family protein (TAIR:AT1G80720.1); Has 144 Blast hits to 143 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 56; Plants - 67; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT2G41600.5p  transcript_id AT2G41600.5  protein_id AT2G41600.5p  transcript_id AT2G41600.5  
At2g41600	chr2:017346588	0.0	C/17346588-17346701,17345993-17346330,17345718-17345760	AT2G41600.2  CDS  gene_syn T32G6.12, T32G6_12  go_component mitochondrial matrix|GO:0005759||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrial matrix; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial glycoprotein (InterPro:IPR003428); Has 20 Blast hits to 20 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G41600.2p  transcript_id AT2G41600.2  protein_id AT2G41600.2p  transcript_id AT2G41600.2  
At2g41610	chr2:017347181	0.0	W/17347181-17348113	AT2G41610.1  CDS  gene_syn T32G6.13, T32G6_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G41610.1p  transcript_id AT2G41610.1  protein_id AT2G41610.1p  transcript_id AT2G41610.1  
At2g41616	chr2:017349437	0.0	C/17349437-17349574	AT2G41616.1  miRNA  gene_syn MICRORNA778A, MIR778A  gene MIR778A  function Encodes a microRNA that targets several SET domain-containing genes including SUVH6. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UGGCUUGGUUUAUGUACACCG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR778A (MICRORNA778A); miRNA  transcript_id AT2G41616.1  
At2g41620	chr2:017354896	0.0	C/17354896-17354997,17354727-17354818,17354492-17354558,17354065-17354124,17353872-17353961,17353406-17353669,17353068-17353163,17352816-17352950,17352580-17352633,17352412-17352495,17352209-17352295,17351227-17352129,17350959-17351140,17350584-17350875,17350419-17350496	AT2G41620.1  CDS  gene_syn T32G6.14, T32G6_14  go_component nucleolus|GO:0005730|15496452|IDA  go_process transport|GO:0006810||IEA  go_function molecular_function|GO:0003674||ND  product nucleoporin interacting component family protein  note nucleoporin interacting component family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; LOCATED IN: nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoporin interacting component Nup93/Nic96 (InterPro:IPR007231); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57350.1); Has 274 Blast hits to 270 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 146; Fungi - 97; Plants - 27; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G41620.1p  transcript_id AT2G41620.1  protein_id AT2G41620.1p  transcript_id AT2G41620.1  
At2g41630	chr2:017357048	0.0	C/17357048-17357400,17356627-17356651,17356389-17356518,17356165-17356295,17355940-17356028,17355781-17355857,17355555-17355688	AT2G41630.1  CDS  gene_syn T32G6.15, T32G6_15, TFIIB, TRANSCRIPTION FACTOR II B, TRANSCRIPTION FACTOR TFIIB  gene TFIIB  function Encodes the transcription factor TFIIB.  go_component nucleus|GO:0005634||IEA  go_component transcription factor complex|GO:0005667||IEA  go_process transcription initiation|GO:0006352||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process translational initiation|GO:0006413||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function transcription regulator activity|GO:0030528||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||ISS  product TFIIB (TRANSCRIPTION FACTOR II B); RNA polymerase II transcription factor/ protein binding / transcription regulator/ translation initiation factor/ zinc ion binding  note TRANSCRIPTION FACTOR II B (TFIIB); FUNCTIONS IN: protein binding, RNA polymerase II transcription factor activity, transcription regulator activity, zinc ion binding, translation initiation factor activity; INVOLVED IN: translational initiation, regulation of transcription, DNA-dependent, transcription initiation, regulation of transcription; LOCATED IN: transcription factor complex, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Zinc finger, TFIIB-type (InterPro:IPR013137), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2) (TAIR:AT3G10330.1); Has 1510 Blast hits to 1508 proteins in 258 species: Archae - 347; Bacteria - 0; Metazoa - 270; Fungi - 185; Plants - 108; Viruses - 12; Other Eukaryotes - 588 (source: NCBI BLink).  protein_id AT2G41630.1p  transcript_id AT2G41630.1  protein_id AT2G41630.1p  transcript_id AT2G41630.1  
At2g41640	chr2:017360654	0.0	W/17360654-17360864,17360963-17361040,17361178-17362391	AT2G41640.1  CDS  gene_syn T32G6.16, T32G6_16  go_function transferase activity, transferring glycosyl groups|GO:0016757||IEA  go_process biological_process|GO:0008150||ND  product transferase, transferring glycosyl groups  note transferase, transferring glycosyl groups; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyltransferase AER61, uncharacterized (InterPro:IPR007657); BEST Arabidopsis thaliana protein match is: transferase, transferring glycosyl groups (TAIR:AT3G57380.1); Has 480 Blast hits to 479 proteins in 83 species: Archae - 0; Bacteria - 34; Metazoa - 143; Fungi - 6; Plants - 243; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT2G41640.1p  transcript_id AT2G41640.1  protein_id AT2G41640.1p  transcript_id AT2G41640.1  
At2g41650	chr2:017363938	0.0	W/17363938-17363951,17364033-17364219	AT2G41650.1  CDS  gene_syn T32G6.17, T32G6_17  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G41650.1p  transcript_id AT2G41650.1  protein_id AT2G41650.1p  transcript_id AT2G41650.1  
At2g41660	chr2:017367945	0.0	W/17367945-17368838	AT2G41660.1  CDS  gene_syn MIZ1, T32G6.18, T32G6_18, mizu-kussei 1  gene MIZ1  function Essential for hydrotropism in roots. Mutant roots are defective in hydrotropism, and have slightly reduced phototropism and modified wavy growth response. Has normal gravitropism and root elongation.  go_process hydrotropism|GO:0010274|17360591|IMP  go_function molecular_function|GO:0003674||ND  product MIZ1 (mizu-kussei 1)  note mizu-kussei 1 (MIZ1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: hydrotropism; EXPRESSED IN: hypocotyl, root, columella root cap cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF617, plant (InterPro:IPR006460); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25640.1); Has 135 Blast hits to 134 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G41660.1p  transcript_id AT2G41660.1  protein_id AT2G41660.1p  transcript_id AT2G41660.1  
At2g41670	chr2:017374118	0.0	W/17374118-17374288,17374396-17374500,17374593-17374670,17374805-17374946,17375123-17375193,17375300-17375396,17375599-17375816,17375899-17376177	AT2G41670.1  CDS  gene_syn T32G6.19, T32G6_19  go_component chloroplast|GO:0009507|18431481|IDA  go_function GTP binding|GO:0005525||IEA  go_process biological_process|GO:0008150||ND  go_function GTP binding|GO:0005525||ISS  product GTP-binding family protein  note GTP-binding family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: GTP binding (TAIR:AT4G10650.1); Has 2332 Blast hits to 2332 proteins in 753 species: Archae - 70; Bacteria - 1127; Metazoa - 335; Fungi - 275; Plants - 106; Viruses - 0; Other Eukaryotes - 419 (source: NCBI BLink).  protein_id AT2G41670.1p  transcript_id AT2G41670.1  protein_id AT2G41670.1p  transcript_id AT2G41670.1  
At2g41680	chr2:017378791	0.0	C/17378791-17379028,17378491-17378698,17378296-17378401,17377930-17378195,17377286-17377565,17377073-17377180,17376910-17376996,17376716-17376820,17376489-17376619,17376349-17376409	AT2G41680.1  CDS  gene_syn NADPH-DEPENDENT THIOREDOXIN REDUCTASE C, NTRC, T32G6.20, T32G6_20  gene NTRC  function Encodes a NADPH thioredoxin reductase involved in chloroplast protection against oxidative damage.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast|GO:0009507||IDA  go_process hydrogen peroxide catabolic process|GO:0042744|16891402|IMP  go_function thioredoxin-disulfide reductase activity|GO:0004791|16891402|IMP  go_function thioredoxin-disulfide reductase activity|GO:0004791||ISS  product NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C); thioredoxin-disulfide reductase  note NADPH-DEPENDENT THIOREDOXIN REDUCTASE C (NTRC); FUNCTIONS IN: thioredoxin-disulfide reductase activity; INVOLVED IN: hydrogen peroxide catabolic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Thioredoxin fold (InterPro:IPR012335), Thioredoxin reductase (InterPro:IPR005982), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Pyridine nucleotide-disulphide oxidoreductase, class-II, active site (InterPro:IPR008255), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A); thioredoxin-disulfide reductase (TAIR:AT2G17420.1); Has 23134 Blast hits to 23116 proteins in 1868 species: Archae - 500; Bacteria - 12759; Metazoa - 903; Fungi - 516; Plants - 631; Viruses - 3; Other Eukaryotes - 7822 (source: NCBI BLink).  protein_id AT2G41680.1p  transcript_id AT2G41680.1  protein_id AT2G41680.1p  transcript_id AT2G41680.1  
At2g41690	chr2:017381723	0.0	W/17381723-17382019,17382140-17382577	AT2G41690.1  CDS  gene_syn AT-HSFB3, HEAT SHOCK TRANSCRIPTION FACTOR B3, HSFB3, T32G6.21, T32G6_21  gene AT-HSFB3  function member of Heat Stress Transcription Factor (Hsf) family  go_component nucleus|GO:0005634||IEA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AT-HSFB3; DNA binding / transcription factor  note AT-HSFB3; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to cadmium ion; LOCATED IN: nucleus; EXPRESSED IN: leaf whorl, inflorescence meristem, flower, cultured cell; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: AT-HSFB2A; DNA binding / transcription factor (TAIR:AT5G62020.1); Has 1268 Blast hits to 1265 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 261; Fungi - 311; Plants - 449; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).  protein_id AT2G41690.1p  transcript_id AT2G41690.1  protein_id AT2G41690.1p  transcript_id AT2G41690.1  
At2g41700	chr2:017395784	0.0	C/17395784-17395932,17395512-17395680,17395331-17395413,17394744-17394960,17394210-17394418,17393437-17393625,17393188-17393302,17393015-17393104,17392603-17392811,17392402-17392514,17391985-17392091,17391731-17391793,17391109-17391195,17390711-17390809,17390448-17390632,17389938-17389992,17389781-17389852,17389399-17389491,17388790-17389368,17388225-17388403,17388072-17388105,17387528-17387710,17387136-17387219,17386985-17387026,17386778-17386874,17386490-17386677,17386325-17386429,17386093-17386275,17385856-17385989,17385610-17385751,17385397-17385532,17385186-17385265,17385001-17385108,17384614-17384764,17384339-17384475,17384160-17384252,17383786-17384089,17383560-17383693,17383417-17383478,17383239-17383320	AT2G41700.2  CDS  go_component plasma membrane|GO:0005886|17151019|IDA  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ATPase, coupled to transmembrane movement of substances / amino acid transmembrane transporter  note ATPase, coupled to transmembrane movement of substances / amino acid transmembrane transporter; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, amino acid transmembrane transporter activity; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATATH11; ATPase, coupled to transmembrane movement of substances / transporter (TAIR:AT5G61730.1); Has 473573 Blast hits to 224334 proteins in 2606 species: Archae - 8699; Bacteria - 324667; Metazoa - 13921; Fungi - 7134; Plants - 4665; Viruses - 52; Other Eukaryotes - 114435 (source: NCBI BLink).  protein_id AT2G41700.2p  transcript_id AT2G41700.2  protein_id AT2G41700.2p  transcript_id AT2G41700.2  
At2g41700	chr2:017396024	0.0	C/17396024-17396110,17395784-17395863,17395512-17395680,17395331-17395413,17394744-17394960,17394210-17394418,17394057-17394117,17393860-17393946,17393437-17393669,17393188-17393302,17393015-17393104,17392603-17392811,17392402-17392514,17391985-17392091,17391731-17391793,17391109-17391195,17390711-17390809,17390448-17390632,17389938-17389992,17389781-17389852,17388790-17389491,17388225-17388403,17387528-17387738,17387136-17387219,17386985-17387026,17386778-17386874,17386550-17386677,17386325-17386429,17386099-17386245,17385610-17385873,17385397-17385532,17385186-17385265,17385001-17385108,17384614-17384764,17384339-17384475,17384178-17384252,17383786-17384089,17383560-17383693,17383417-17383478,17383239-17383320	AT2G41700.1  CDS  go_component plasma membrane|GO:0005886|17151019|IDA  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ATPase, coupled to transmembrane movement of substances / amino acid transmembrane transporter  note ATPase, coupled to transmembrane movement of substances / amino acid transmembrane transporter; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, amino acid transmembrane transporter activity; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATATH11; ATPase, coupled to transmembrane movement of substances / transporter (TAIR:AT5G61730.1); Has 474223 Blast hits to 224447 proteins in 2607 species: Archae - 8707; Bacteria - 325328; Metazoa - 13868; Fungi - 7154; Plants - 4676; Viruses - 52; Other Eukaryotes - 114438 (source: NCBI BLink).  protein_id AT2G41700.1p  transcript_id AT2G41700.1  protein_id AT2G41700.1p  transcript_id AT2G41700.1  
At2g41705	chr2:017398083	0.0	W/17398083-17398460,17398556-17398639,17398735-17398833,17398916-17399108,17399196-17399608,17399692-17399910	AT2G41705.1  CDS  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|11152613|ISS  product camphor resistance CrcB family protein  note camphor resistance CrcB family protein; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Camphor resistance CrcB protein (InterPro:IPR003691); Has 1012 Blast hits to 1011 proteins in 416 species: Archae - 14; Bacteria - 749; Metazoa - 2; Fungi - 59; Plants - 19; Viruses - 0; Other Eukaryotes - 169 (source: NCBI BLink).  protein_id AT2G41705.1p  transcript_id AT2G41705.1  protein_id AT2G41705.1p  transcript_id AT2G41705.1  
At2g41705	chr2:017398083	0.0	W/17398083-17398460,17398556-17398639,17398735-17398833,17398916-17399108,17399196-17399608,17399692-17399910	AT2G41705.2  CDS  go_component membrane|GO:0016020|11152613|ISS  product camphor resistance CrcB family protein  note camphor resistance CrcB family protein; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Camphor resistance CrcB protein (InterPro:IPR003691).  protein_id AT2G41705.2p  transcript_id AT2G41705.2  protein_id AT2G41705.2p  transcript_id AT2G41705.2  
At2g41710	chr2:017402677	0.0	C/17402677-17402903,17402254-17402336,17402099-17402107,17401921-17402009,17401667-17401740,17401536-17401586,17401128-17401189,17400425-17401044,17400274-17400330	AT2G41710.1  CDS  gene_syn T11A7.19, T11A7_19  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634|10948255|IC  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product ovule development protein, putative  note ovule development protein, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: WRI1 (WRINKLED 1); DNA binding / transcription factor (TAIR:AT3G54320.3); Has 2169 Blast hits to 1863 proteins in 124 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2133; Viruses - 1; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT2G41710.1p  transcript_id AT2G41710.1  protein_id AT2G41710.1p  transcript_id AT2G41710.1  
At2g41710	chr2:017402677	0.0	C/17402677-17402903,17402254-17402336,17402099-17402107,17401921-17402009,17401667-17401740,17401536-17401601,17401128-17401189,17400425-17401044,17400274-17400330	AT2G41710.2  CDS  gene_syn T11A7.19, T11A7_19  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634|10948255|IC  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product ovule development protein, putative  note ovule development protein, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: WRI1 (WRINKLED 1); DNA binding / transcription factor (TAIR:AT3G54320.3); Has 2137 Blast hits to 1839 proteins in 122 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2103; Viruses - 1; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT2G41710.2p  transcript_id AT2G41710.2  protein_id AT2G41710.2p  transcript_id AT2G41710.2  
At2g41720	chr2:017406527	0.0	C/17406527-17406648,17406327-17406432,17405083-17406192,17404877-17404982,17404583-17404787,17404354-17404486,17404133-17404237,17403861-17404025	AT2G41720.2  CDS  gene_syn EMB2654, EMBRYO DEFECTIVE 2654, T11A7.18, T11A7_18  gene EMB2654  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product EMB2654 (EMBRYO DEFECTIVE 2654)  note EMBRYO DEFECTIVE 2654 (EMB2654); INVOLVED IN: embryonic development ending in seed dormancy; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G02860.1); Has 26960 Blast hits to 6176 proteins in 190 species: Archae - 3; Bacteria - 24; Metazoa - 860; Fungi - 668; Plants - 23710; Viruses - 0; Other Eukaryotes - 1695 (source: NCBI BLink).  protein_id AT2G41720.2p  transcript_id AT2G41720.2  protein_id AT2G41720.2p  transcript_id AT2G41720.2  
At2g41720	chr2:017406783	0.0	C/17406783-17407127,17406527-17406699,17406327-17406432,17405083-17406192,17404877-17404982,17404583-17404787,17404354-17404486,17404133-17404237,17403905-17404025,17403744-17403808	AT2G41720.1  CDS  gene_syn EMB2654, EMBRYO DEFECTIVE 2654, T11A7.18, T11A7_18  gene EMB2654  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product EMB2654 (EMBRYO DEFECTIVE 2654)  note EMBRYO DEFECTIVE 2654 (EMB2654); INVOLVED IN: embryonic development ending in seed dormancy; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G02860.1); Has 26058 Blast hits to 6187 proteins in 190 species: Archae - 3; Bacteria - 24; Metazoa - 887; Fungi - 659; Plants - 22791; Viruses - 0; Other Eukaryotes - 1694 (source: NCBI BLink).  protein_id AT2G41720.1p  transcript_id AT2G41720.1  protein_id AT2G41720.1p  transcript_id AT2G41720.1  
At2g41730	chr2:017409488	0.0	W/17409488-17409847	AT2G41730.1  CDS  gene_syn T11A7.17, T11A7_17  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: sepal, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24640.1); Has 13 Blast hits to 13 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G41730.1p  transcript_id AT2G41730.1  protein_id AT2G41730.1p  transcript_id AT2G41730.1  
At2g41740	chr2:017416829	0.0	C/17416829-17416878,17416608-17416707,17416413-17416481,17416076-17416312,17415807-17415984,17415554-17415686,17415247-17415406,17415005-17415155,17414813-17414913,17414570-17414728,17414123-17414191,17413977-17414045,17413747-17413884,17413428-17413556,17413169-17413316,17413035-17413045,17412817-17412957,17412604-17412729,17412402-17412464,17412193-17412294,17411466-17411730,17411175-17411392,17410962-17411075	AT2G41740.1  CDS  gene_syn ATVLN2, T11A7.16, T11A7_16, VILLIN 2, VLN2  gene VLN2  function Encodes a protein with high homology to animal villin.  go_process cytoskeleton organization|GO:0007010||IEA  go_function actin binding|GO:0003779||IEA  go_component cellular_component|GO:0005575||ND  go_process cytoskeleton organization|GO:0007010||ISS  go_function actin binding|GO:0003779||ISS  product VLN2 (VILLIN 2); actin binding  note VILLIN 2 (VLN2); FUNCTIONS IN: actin binding; INVOLVED IN: cytoskeleton organization; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Gelsolin (InterPro:IPR007122), Villin headpiece (InterPro:IPR003128), Gelsolin region (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: VLN3 (VILLIN 3); actin binding (TAIR:AT3G57410.1); Has 3201 Blast hits to 1996 proteins in 196 species: Archae - 0; Bacteria - 46; Metazoa - 2125; Fungi - 223; Plants - 146; Viruses - 2; Other Eukaryotes - 659 (source: NCBI BLink).  protein_id AT2G41740.1p  transcript_id AT2G41740.1  protein_id AT2G41740.1p  transcript_id AT2G41740.1  
At2g41745	chr2:017417954	0.0	C/17417954-17419423	AT2G41745.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to putative reverse transcriptase, blastp match of 28% identity and 4.7e-24 P-value to GP|20279456|gb|AAM18736.1|AC092548_14|AC092548 putative reverse transcriptase {Oryza sativa (japonica cultivar-group)}  
At2g41750	chr2:017421746	0.0	C/17421746-17422507	AT2G41750.1  CDS  gene_syn T11A7.15, T11A7_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DTW domain-containing protein  note DTW domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DTW (InterPro:IPR005636); Has 352 Blast hits to 352 proteins in 152 species: Archae - 0; Bacteria - 225; Metazoa - 81; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT2G41750.1p  transcript_id AT2G41750.1  protein_id AT2G41750.1p  transcript_id AT2G41750.1  
At2g41760	chr2:017422864	0.0	W/17422864-17422931,17423116-17423221,17423360-17423437,17423523-17423653,17423901-17424025,17424098-17424255	AT2G41760.1  CDS  gene_syn T11A7.14, T11A7_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 138 Blast hits to 138 proteins in 65 species: Archae - 0; Bacteria - 2; Metazoa - 100; Fungi - 8; Plants - 12; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT2G41760.1p  transcript_id AT2G41760.1  protein_id AT2G41760.1p  transcript_id AT2G41760.1  
At2g41770	chr2:017425331	0.0	C/17425331-17427042,17425124-17425250,17424549-17425025	AT2G41770.1  CDS  gene_syn T11A7.13, T11A7_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF288 (InterPro:IPR005049); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57420.1); Has 153 Blast hits to 153 proteins in 20 species: Archae - 2; Bacteria - 7; Metazoa - 47; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT2G41770.1p  transcript_id AT2G41770.1  protein_id AT2G41770.1p  transcript_id AT2G41770.1  
At2g41780	chr2:017428157	0.0	W/17428157-17428540	AT2G41780.1  CDS  gene_syn T11A7.12, T11A7_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G41780.1p  transcript_id AT2G41780.1  protein_id AT2G41780.1p  transcript_id AT2G41780.1  
At2g41780	chr2:017428157	0.0	W/17428157-17428540	AT2G41780.2  CDS  gene_syn T11A7.12, T11A7_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G41780.2p  transcript_id AT2G41780.2  protein_id AT2G41780.2p  transcript_id AT2G41780.2  
At2g41790	chr2:017435973	0.0	C/17435973-17436110,17435804-17435879,17435601-17435668,17435399-17435490,17435227-17435300,17435098-17435141,17434968-17435019,17434711-17434833,17434497-17434609,17434230-17434392,17433739-17433831,17433516-17433601,17433294-17433380,17432967-17433070,17432478-17432580,17432262-17432357,17431986-17432175,17431552-17431613,17431347-17431451,17431034-17431235,17430704-17430912,17430398-17430522,17430272-17430323,17430102-17430188,17429876-17429998,17429453-17429698	AT2G41790.1  CDS  gene_syn T11A7.11, T11A7_11  go_process proteolysis|GO:0006508||IEA  go_function catalytic activity|GO:0003824||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_process proteolysis|GO:0006508||ISS  go_function metalloendopeptidase activity|GO:0004222||ISS  product peptidase M16 family protein / insulinase family protein  note peptidase M16 family protein / insulinase family protein; FUNCTIONS IN: metalloendopeptidase activity, zinc ion binding, catalytic activity, metal ion binding; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M16, zinc-binding site (InterPro:IPR001431), Peptidase M16, C-terminal (InterPro:IPR007863), Peptidase M16, N-terminal (InterPro:IPR011765), Metalloenzyme, LuxS/M16 peptidase-like, metal-binding (InterPro:IPR011249), Peptidase M16, core (InterPro:IPR011237); BEST Arabidopsis thaliana protein match is: peptidase M16 family protein / insulinase family protein (TAIR:AT3G57470.2); Has 5997 Blast hits to 5925 proteins in 1223 species: Archae - 5; Bacteria - 3363; Metazoa - 558; Fungi - 370; Plants - 146; Viruses - 3; Other Eukaryotes - 1552 (source: NCBI BLink).  protein_id AT2G41790.1p  transcript_id AT2G41790.1  protein_id AT2G41790.1p  transcript_id AT2G41790.1  
At2g41800	chr2:017437912	0.0	C/17437912-17438005,17437311-17437808,17436671-17437191	AT2G41800.1  CDS  gene_syn T11A7.10, T11A7_10  go_component cell wall|GO:0005618|14595688|IDA  go_component cell wall|GO:0005618|16287169|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41810.1); Has 156 Blast hits to 155 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 156; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G41800.1p  transcript_id AT2G41800.1  protein_id AT2G41800.1p  transcript_id AT2G41800.1  
At2g41810	chr2:017441203	0.0	C/17441203-17441296,17440258-17440755,17439414-17439934	AT2G41810.1  CDS  gene_syn T11A7.9, T11A7_9  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41800.1); Has 161 Blast hits to 157 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 159; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G41810.1p  transcript_id AT2G41810.1  protein_id AT2G41810.1p  transcript_id AT2G41810.1  
At2g41820	chr2:017447170	0.0	W/17447170-17449513,17449586-17449914	AT2G41820.1  CDS  gene_syn T11A7.8, T11A7_8  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase, active site (InterPro:IPR008266), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT5G63930.1); Has 105306 Blast hits to 61826 proteins in 2424 species: Archae - 60; Bacteria - 8059; Metazoa - 38304; Fungi - 3243; Plants - 43835; Viruses - 157; Other Eukaryotes - 11648 (source: NCBI BLink).  protein_id AT2G41820.1p  transcript_id AT2G41820.1  protein_id AT2G41820.1p  transcript_id AT2G41820.1  
At2g41830	chr2:017456307	0.0	C/17456307-17456453,17455857-17455931,17455550-17455665,17455233-17455347,17454978-17455106,17454829-17454876,17454276-17454460,17454000-17454196,17453631-17453923,17453399-17453548,17452883-17453302,17452414-17452563,17452195-17452270,17451856-17451983,17451487-17451681,17451233-17451370,17451035-17451145,17450697-17450936,17450431-17450595	AT2G41830.1  CDS  gene_syn T11A7.7, T11A7_7  go_component plasma membrane|GO:0005886|17317660|IDA  product cyclin-related  note cyclin-related; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G21080.1); Has 188 Blast hits to 186 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 3; Plants - 65; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT2G41830.1p  transcript_id AT2G41830.1  protein_id AT2G41830.1p  transcript_id AT2G41830.1  
At2g41835	chr2:017459316	0.0	C/17459316-17459414,17458020-17458760	AT2G41835.1  CDS  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type, AN1-like) family protein  note zinc finger (C2H2 type, AN1-like) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type, AN1-like) family protein (TAIR:AT3G57480.1); Has 560 Blast hits to 547 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 383; Fungi - 75; Plants - 47; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT2G41835.1p  transcript_id AT2G41835.1  protein_id AT2G41835.1p  transcript_id AT2G41835.1  
At2g41840	chr2:017460703	0.0	C/17460703-17461398,17460016-17460177	AT2G41840.1  CDS  gene_syn T11A7.6, T11A7_6  go_component nucleolus|GO:0005730|15496452|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S2 (RPS2C)  note 40S ribosomal protein S2 (RPS2C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5, eukaryotic/archaeal (InterPro:IPR005711), Double-stranded RNA-binding-like (InterPro:IPR014720), Ribosomal protein S5, C-terminal (InterPro:IPR005324), Ribosomal protein S5 (InterPro:IPR000851), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721), Ribosomal protein S5, N-terminal, conserved site (InterPro:IPR018192), Ribosomal protein S5, N-terminal (InterPro:IPR013810); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S2 (RPS2B) (TAIR:AT1G59359.1); Has 9044 Blast hits to 7622 proteins in 1716 species: Archae - 183; Bacteria - 3055; Metazoa - 2026; Fungi - 746; Plants - 385; Viruses - 17; Other Eukaryotes - 2632 (source: NCBI BLink).  protein_id AT2G41840.1p  transcript_id AT2G41840.1  protein_id AT2G41840.1p  transcript_id AT2G41840.1  
At2g41850	chr2:017463805	0.0	C/17463805-17464059,17463575-17463706,17463320-17463490,17463172-17463192,17462871-17463078,17462632-17462713,17462429-17462537,17462217-17462330,17461918-17462127	AT2G41850.1  CDS  gene_syn ADPG2, ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 2, PGAZAT, POLYGALACTURONASE ABSCISSION ZONE A. THALIANA, T11A7.5, T11A7_5  gene PGAZAT  function ADPG2.  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_process cell wall modification during abscission|GO:0009830|19168715|TAS  go_process anther dehiscence|GO:0009901|19168715|IMP  go_process fruit dehiscence|GO:0010047|19168715|IMP  go_process floral organ abscission|GO:0010227|19168715|IMP  go_function polygalacturonase activity|GO:0004650|19168715|IDA  go_function polygalacturonase activity|GO:0004650||ISS  product PGAZAT (POLYGALACTURONASE ABSCISSION ZONE A. THALIANA); polygalacturonase  note POLYGALACTURONASE ABSCISSION ZONE A. THALIANA (PGAZAT); FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: cell wall modification during abscission, fruit dehiscence, floral organ abscission, anther dehiscence, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Parallel beta-helix repeat (InterPro:IPR006626), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743); BEST Arabidopsis thaliana protein match is: ADPG1; polygalacturonase (TAIR:AT3G57510.1); Has 2596 Blast hits to 2588 proteins in 351 species: Archae - 6; Bacteria - 597; Metazoa - 8; Fungi - 1002; Plants - 893; Viruses - 5; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT2G41850.1p  transcript_id AT2G41850.1  protein_id AT2G41850.1p  transcript_id AT2G41850.1  
At2g41860	chr2:017469286	0.0	C/17469286-17469786,17469046-17469174,17468830-17468968,17468586-17468738,17468209-17468492,17467891-17468121,17467646-17467801	AT2G41860.2  CDS  gene_syn CPK14, T11A7.4, T11A7_4  gene CPK14  function member of Calcium Dependent Protein Kinase  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  go_function kinase activity|GO:0016301||ISS  product CPK14; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note CPK14; FUNCTIONS IN: in 7 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32); calcium-dependent protein kinase C/ calmodulin-dependent protein kinase/ kinase/ protein binding (TAIR:AT3G57530.1); Has 91693 Blast hits to 89095 proteins in 2575 species: Archae - 70; Bacteria - 7997; Metazoa - 40010; Fungi - 10839; Plants - 13495; Viruses - 394; Other Eukaryotes - 18888 (source: NCBI BLink).  protein_id AT2G41860.2p  transcript_id AT2G41860.2  protein_id AT2G41860.2p  transcript_id AT2G41860.2  
At2g41860	chr2:017469286	0.0	C/17469286-17469786,17469051-17469174,17468830-17468973,17468586-17468738,17468209-17468492,17467891-17468121,17467646-17467801	AT2G41860.1  CDS  gene_syn CPK14, T11A7.4, T11A7_4  gene CPK14  function member of Calcium Dependent Protein Kinase  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  go_function kinase activity|GO:0016301||ISS  product CPK14; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase  note CPK14; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32); calcium-dependent protein kinase C/ calmodulin-dependent protein kinase/ kinase/ protein binding (TAIR:AT3G57530.1); Has 91818 Blast hits to 89220 proteins in 2576 species: Archae - 72; Bacteria - 8005; Metazoa - 40020; Fungi - 10847; Plants - 13570; Viruses - 394; Other Eukaryotes - 18910 (source: NCBI BLink).  protein_id AT2G41860.1p  transcript_id AT2G41860.1  protein_id AT2G41860.1p  transcript_id AT2G41860.1  
At2g41870	chr2:017471896	0.0	C/17471896-17472519,17471119-17471319	AT2G41870.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product remorin family protein  note remorin family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal region (InterPro:IPR005516); BEST Arabidopsis thaliana protein match is: remorin family protein (TAIR:AT3G57540.1); Has 284 Blast hits to 284 proteins in 29 species: Archae - 0; Bacteria - 3; Metazoa - 8; Fungi - 6; Plants - 258; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G41870.1p  transcript_id AT2G41870.1  protein_id AT2G41870.1p  transcript_id AT2G41870.1  
At2g41880	chr2:017475088	0.0	W/17475088-17475090,17475240-17475353,17475431-17475507,17475606-17475735,17475812-17476174,17476262-17476383,17476474-17476609,17476684-17476729,17476809-17476899,17476995-17477076	AT2G41880.1  CDS  gene_syn AGK1, GK-1, GUANYLATE KINASE 1, T11A7.23  gene GK-1  function Guanylate kinase. Involved in nucleotide metabolism.  go_component cellular_component|GO:0005575||ND  go_process nucleotide metabolic process|GO:0009117|10632732|TAS  go_function guanylate kinase activity|GO:0004385|10632732|IDA  go_function guanylate kinase activity|GO:0004385|10632732|IGI  go_function guanylate kinase activity|GO:0004385||ISS  product GK-1 (GUANYLATE KINASE 1); guanylate kinase  note GUANYLATE KINASE 1 (GK-1); FUNCTIONS IN: guanylate kinase activity; INVOLVED IN: nucleotide metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Guanylate kinase (InterPro:IPR008144), Guanylate kinase/L-type calcium channel region (InterPro:IPR008145), Guanylate kinase, sub-group (InterPro:IPR017665); BEST Arabidopsis thaliana protein match is: AGK2 (GUANYLATE KINASE); guanylate kinase (TAIR:AT3G57550.1); Has 6814 Blast hits to 6799 proteins in 1547 species: Archae - 0; Bacteria - 2933; Metazoa - 1224; Fungi - 100; Plants - 69; Viruses - 104; Other Eukaryotes - 2384 (source: NCBI BLink).  protein_id AT2G41880.1p  transcript_id AT2G41880.1  protein_id AT2G41880.1p  transcript_id AT2G41880.1  
At2g41890	chr2:017478058	0.0	C/17478058-17480352	AT2G41890.1  CDS  gene_syn T11A7.1, T11A7_1  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function sugar binding|GO:0005529||ISS  product curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein  note curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein; FUNCTIONS IN: sugar binding, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609), Protein kinase, core (InterPro:IPR000719), N/apple PAN (InterPro:IPR003014), S-locus glycoprotein (InterPro:IPR000858), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: lectin protein kinase family protein (TAIR:AT1G34300.1); Has 16543 Blast hits to 16206 proteins in 433 species: Archae - 0; Bacteria - 58; Metazoa - 3423; Fungi - 118; Plants - 12457; Viruses - 56; Other Eukaryotes - 431 (source: NCBI BLink).  protein_id AT2G41890.1p  transcript_id AT2G41890.1  protein_id AT2G41890.1p  transcript_id AT2G41890.1  
At2g41900	chr2:017491352	0.0	W/17491352-17493502	AT2G41900.1  CDS  gene_syn T6D20.20, T6D20_20  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product zinc finger (CCCH-type) family protein  note zinc finger (CCCH-type) family protein; FUNCTIONS IN: transcription factor activity, nucleic acid binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein (TAIR:AT5G12850.1); Has 4817 Blast hits to 2898 proteins in 270 species: Archae - 2; Bacteria - 179; Metazoa - 2413; Fungi - 222; Plants - 261; Viruses - 8; Other Eukaryotes - 1732 (source: NCBI BLink).  protein_id AT2G41900.1p  transcript_id AT2G41900.1  protein_id AT2G41900.1p  transcript_id AT2G41900.1  
At2g41905	chr2:017495766	0.0	W/17495766-17495951	AT2G41905.1  CDS  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; Has 27 Blast hits to 27 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G41905.1p  transcript_id AT2G41905.1  protein_id AT2G41905.1p  transcript_id AT2G41905.1  
At2g41910	chr2:017496956	0.0	W/17496956-17498077	AT2G41910.1  CDS  gene_syn T6D20.19, T6D20_19  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G41920.1); Has 69077 Blast hits to 68598 proteins in 1662 species: Archae - 64; Bacteria - 5246; Metazoa - 30103; Fungi - 7122; Plants - 12626; Viruses - 290; Other Eukaryotes - 13626 (source: NCBI BLink).  protein_id AT2G41910.1p  transcript_id AT2G41910.1  protein_id AT2G41910.1p  transcript_id AT2G41910.1  
At2g41920	chr2:017499448	0.0	W/17499448-17500404	AT2G41920.1  CDS  gene_syn T6D20.18, T6D20_18  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G27790.1); Has 69322 Blast hits to 68695 proteins in 1702 species: Archae - 68; Bacteria - 5479; Metazoa - 30735; Fungi - 7242; Plants - 11219; Viruses - 287; Other Eukaryotes - 14292 (source: NCBI BLink).  protein_id AT2G41920.1p  transcript_id AT2G41920.1  protein_id AT2G41920.1p  transcript_id AT2G41920.1  
At2g41930	chr2:017501629	0.0	W/17501629-17502684	AT2G41930.1  CDS  gene_syn T6D20.17, T6D20_17  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note ATP binding / kinase/ protein kinase/ protein serine/threonine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G42550.1); Has 69223 Blast hits to 68523 proteins in 1689 species: Archae - 64; Bacteria - 5442; Metazoa - 30830; Fungi - 7240; Plants - 10777; Viruses - 371; Other Eukaryotes - 14499 (source: NCBI BLink).  protein_id AT2G41930.1p  transcript_id AT2G41930.1  protein_id AT2G41930.1p  transcript_id AT2G41930.1  
At2g41940	chr2:017507556	0.0	W/17507556-17508329	AT2G41940.1  CDS  gene_syn T6D20.16, T6D20_16, ZFP8, ZINC FINGER PROTEIN 8, ZINC FINGER PROTEIN8  gene ZFP8  function Encodes a zinc finger protein containing only a single zinc finger.  go_component intracellular|GO:0005622||IEA  go_process trichome differentiation|GO:0010026|17507408|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product ZFP8 (ZINC FINGER PROTEIN 8); nucleic acid binding / transcription factor/ zinc ion binding  note ZINC FINGER PROTEIN 8 (ZFP8); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: trichome differentiation, regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: GIS (GLABROUS INFLORESCENCE STEMS); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT3G58070.1); Has 418 Blast hits to 415 proteins in 30 species: Archae - 0; Bacteria - 1; Metazoa - 23; Fungi - 8; Plants - 351; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT2G41940.1p  transcript_id AT2G41940.1  protein_id AT2G41940.1p  transcript_id AT2G41940.1  
At2g41945	chr2:017512773	0.0	C/17512773-17512898,17512633-17512683,17512015-17512066,17511885-17511943,17511722-17511767,17511071-17511213	AT2G41945.1  CDS  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04040.1); Has 32 Blast hits to 32 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G41945.1p  transcript_id AT2G41945.1  protein_id AT2G41945.1p  transcript_id AT2G41945.1  
At2g41945	chr2:017512773	0.0	C/17512773-17512898,17512633-17512683,17512015-17512066,17511885-17511943,17511722-17511767,17511080-17511213,17509933-17509965	AT2G41945.2  CDS  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04040.1); Has 32 Blast hits to 32 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G41945.2p  transcript_id AT2G41945.2  protein_id AT2G41945.2p  transcript_id AT2G41945.2  
At2g41945	chr2:017512773	0.0	C/17512773-17512898,17512633-17512683,17512015-17512066,17511885-17511943,17511722-17511767,17511423-17511516,17511290-17511309,17511080-17511213,17509933-17509965	AT2G41945.3  CDS  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18250.1).  protein_id AT2G41945.3p  transcript_id AT2G41945.3  protein_id AT2G41945.3p  transcript_id AT2G41945.3  
At2g41950	chr2:017513137	0.0	W/17513137-17513737,17513830-17514029	AT2G41950.1  CDS  gene_syn T6D20.26, T6D20_26  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 36 Blast hits to 36 proteins in 16 species: Archae - 0; Bacteria - 18; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G41950.1p  transcript_id AT2G41950.1  protein_id AT2G41950.1p  transcript_id AT2G41950.1  
At2g41960	chr2:017518896	0.0	C/17518896-17519015,17518266-17518604,17517935-17518194,17517500-17517641,17516981-17517349,17516734-17516865,17516505-17516633,17514244-17516400	AT2G41960.1  CDS  gene_syn T6D20.15, T6D20_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58050.1); Has 13280 Blast hits to 7264 proteins in 368 species: Archae - 17; Bacteria - 391; Metazoa - 6496; Fungi - 1326; Plants - 525; Viruses - 40; Other Eukaryotes - 4485 (source: NCBI BLink).  protein_id AT2G41960.1p  transcript_id AT2G41960.1  protein_id AT2G41960.1p  transcript_id AT2G41960.1  
At2g41970	chr2:017522208	0.0	C/17522208-17522304,17521857-17522110,17521564-17521690,17521212-17521485,17520998-17521130,17520817-17520903,17520517-17520642	AT2G41970.1  CDS  gene_syn T6D20.14, T6D20_14  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase, active site (InterPro:IPR008266), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase, putative (TAIR:AT1G06700.2); Has 74534 Blast hits to 73890 proteins in 3008 species: Archae - 44; Bacteria - 6804; Metazoa - 33232; Fungi - 5162; Plants - 17059; Viruses - 258; Other Eukaryotes - 11975 (source: NCBI BLink).  protein_id AT2G41970.1p  transcript_id AT2G41970.1  protein_id AT2G41970.1p  transcript_id AT2G41970.1  
At2g41980	chr2:017524483	0.0	C/17524483-17524692,17523988-17524374,17523494-17523814	AT2G41980.1  CDS  gene_syn T6D20.13, T6D20_13  go_component nucleus|GO:0005634||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_process multicellular organismal development|GO:0007275||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_process multicellular organismal development|GO:0007275||ISS  product seven in absentia (SINA) family protein  note seven in absentia (SINA) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: multicellular organismal development, ubiquitin-dependent protein catabolic process, protein ubiquitination; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), TRAF-like (InterPro:IPR008974), Seven in absentia protein, TRAF-like domain (InterPro:IPR018121), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, SIAH-type (InterPro:IPR013010), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven in absentia protein (InterPro:IPR004162), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2); protein binding / ubiquitin-protein ligase/ zinc ion binding (TAIR:AT3G58040.1); Has 1503 Blast hits to 1497 proteins in 636 species: Archae - 0; Bacteria - 0; Metazoa - 1140; Fungi - 11; Plants - 251; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT2G41980.1p  transcript_id AT2G41980.1  protein_id AT2G41980.1p  transcript_id AT2G41980.1  
At2g41990	chr2:017527396	0.0	W/17527396-17527836,17528075-17528527	AT2G41990.1  CDS  gene_syn T6D20.12, T6D20_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35170.1); Has 89 Blast hits to 88 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G41990.1p  transcript_id AT2G41990.1  protein_id AT2G41990.1p  transcript_id AT2G41990.1  
At2g42000	chr2:017529647	0.0	C/17529647-17529828,17529410-17529575	AT2G42000.1  CDS  gene_syn T6D20.11, T6D20_11  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function zinc ion binding|GO:0008270||ISS  product plant EC metallothionein-like family 15 protein  note plant EC metallothionein-like family 15 protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Plant EC metallothionein-like protein, family 15 (InterPro:IPR000316); BEST Arabidopsis thaliana protein match is: plant EC metallothionein-like family 15 protein (TAIR:AT2G23240.1); Has 244 Blast hits to 203 proteins in 65 species: Archae - 0; Bacteria - 4; Metazoa - 92; Fungi - 4; Plants - 97; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT2G42000.1p  transcript_id AT2G42000.1  protein_id AT2G42000.1p  transcript_id AT2G42000.1  
At2g42005	chr2:017531323	0.0	C/17531323-17532564	AT2G42005.1  CDS  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_function amine transmembrane transporter activity|GO:0005275||ISS  product amino acid transporter family protein  note amino acid transporter family protein; FUNCTIONS IN: amine transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid transporter family protein (TAIR:AT4G38250.1); Has 3448 Blast hits to 3371 proteins in 194 species: Archae - 9; Bacteria - 24; Metazoa - 1586; Fungi - 532; Plants - 681; Viruses - 5; Other Eukaryotes - 611 (source: NCBI BLink).  protein_id AT2G42005.1p  transcript_id AT2G42005.1  protein_id AT2G42005.1p  transcript_id AT2G42005.1  
At2g42010	chr2:017536335	0.0	C/17536335-17537990,17535939-17536055,17535666-17535860,17534951-17535199,17534776-17534844,17534532-17534679,17534110-17534258,17533682-17533858,17533409-17533606,17533018-17533311	AT2G42010.1  CDS  gene_syn PHOSPHOLIPASE D, PHOSPHOLIPASE D BETA 1, PLDBETA, PLDBETA1, T6D20.10, T6D20_10  gene PLDBETA1  function phospholipase D (PLDbeta)  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process defense response to bacterium, incompatible interaction|GO:0009816|12182338|IEP  go_function phospholipase D activity|GO:0004630|9054397|TAS  go_function phospholipase D activity|GO:0004630|9353280|IDA  go_function phospholipase D activity|GO:0004630||ISS  product PLDBETA1 (PHOSPHOLIPASE D BETA 1); phospholipase D  note PHOSPHOLIPASE D BETA 1 (PLDBETA1); FUNCTIONS IN: phospholipase D activity; INVOLVED IN: response to cadmium ion, defense response to bacterium, incompatible interaction; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), Phospholipase D (InterPro:IPR015679), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: PLDBETA2; phospholipase D (TAIR:AT4G00240.1); Has 36713 Blast hits to 19933 proteins in 961 species: Archae - 32; Bacteria - 2862; Metazoa - 14970; Fungi - 6849; Plants - 6783; Viruses - 946; Other Eukaryotes - 4271 (source: NCBI BLink).  protein_id AT2G42010.1p  transcript_id AT2G42010.1  protein_id AT2G42010.1p  transcript_id AT2G42010.1  
At2g42020	chr2:017538703	0.0	C/17538703-17538784	AT2G42020.1  tRNA  gene_syn 1342.TRNA-SER-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: GCT)  transcript_id AT2G42020.1  
At2g42030	chr2:017539069	0.0	C/17539069-17540346	AT2G42030.1  CDS  gene_syn T6D20.8, T6D20_8  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G58030.3); Has 4328 Blast hits to 4297 proteins in 264 species: Archae - 0; Bacteria - 6; Metazoa - 2838; Fungi - 431; Plants - 529; Viruses - 16; Other Eukaryotes - 508 (source: NCBI BLink).  protein_id AT2G42030.1p  transcript_id AT2G42030.1  protein_id AT2G42030.1p  transcript_id AT2G42030.1  
At2g42040	chr2:017543282	0.0	W/17543282-17543518,17543816-17543868,17544441-17544484,17544588-17545063	AT2G42040.1  CDS  gene_syn T6D20.7, T6D20_7  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WRC (InterPro:IPR014977); Has 154 Blast hits to 154 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G42040.1p  transcript_id AT2G42040.1  protein_id AT2G42040.1p  transcript_id AT2G42040.1  
At2g42050	chr2:017546140	0.0	C/17546140-17546559	AT2G42050.1  mRNA_TE_gene  pseudo  gene_syn T6D20.6, T6D20_6  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35860.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G37570.1); similar to FMRFamide-related peptides type HF-4 precursor (HeptaFaRP) [Contains: FMRFamide-like; ENNNGYIRF-amide; NDPFLRF-amide; QDPFLRI-amide; QDPFLRF-amide; KQDPFLRI-amide; SEPYLRF-amide; NDPYLRF-amide] (GB:Q07981); contains InterPro domain Protein of unknown function DUF321; (InterPro:IPR005529)  
At2g42060	chr2:017548194	0.0	W/17548194-17549000	AT2G42060.1  CDS  gene_syn T6D20.5, T6D20_5  go_process intracellular signaling cascade|GO:0007242||IEA  go_component cellular_component|GO:0005575||ND  product CHP-rich zinc finger protein, putative  note CHP-rich zinc finger protein, putative; INVOLVED IN: intracellular signaling cascade; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT2G27660.1); Has 1280 Blast hits to 478 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1279; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G42060.1p  transcript_id AT2G42060.1  protein_id AT2G42060.1p  transcript_id AT2G42060.1  
At2g42070	chr2:017550830	0.0	C/17550830-17551066,17550609-17550740,17550447-17550523,17550208-17550343,17549987-17550127,17549831-17549889,17549669-17549729	AT2G42070.1  CDS  gene_syn ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 23, ATNUDT23, ATNUDX23, T6D20.4, T6D20_4  gene ATNUDX23  go_component chloroplast|GO:0009507|18815383|IDA  go_function hydrolase activity|GO:0016787||ISS  go_function FAD diphosphatase activity|GO:0047884|18815383|IDA  product ATNUDX23 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 23); FAD diphosphatase/ hydrolase  note ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 23 (ATNUDX23); FUNCTIONS IN: hydrolase activity, FAD diphosphatase activity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), NUDIX hydrolase, core (InterPro:IPR000086); Has 4344 Blast hits to 4344 proteins in 924 species: Archae - 91; Bacteria - 3112; Metazoa - 94; Fungi - 31; Plants - 36; Viruses - 0; Other Eukaryotes - 980 (source: NCBI BLink).  protein_id AT2G42070.1p  transcript_id AT2G42070.1  protein_id AT2G42070.1p  transcript_id AT2G42070.1  
At2g42080	chr2:017555356	0.0	C/17555356-17555475,17554961-17555053,17554487-17554616,17553729-17554047,17553577-17553631,17553409-17553483	AT2G42080.1  CDS  gene_syn T6D20.3, T6D20_3  go_component chloroplast|GO:0009507||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: heat shock protein binding (TAIR:AT3G58020.1); Has 1058 Blast hits to 1057 proteins in 226 species: Archae - 0; Bacteria - 210; Metazoa - 294; Fungi - 51; Plants - 192; Viruses - 0; Other Eukaryotes - 311 (source: NCBI BLink).  protein_id AT2G42080.1p  transcript_id AT2G42080.1  protein_id AT2G42080.1p  transcript_id AT2G42080.1  
At2g42090	chr2:017556744	0.0	W/17556744-17556785,17556959-17557337,17557596-17558209,17558304-17558369	AT2G42090.1  CDS  gene_syn ACT9, ACTIN 9, T6D20.2, T6D20_2  gene ACT9  function actin related gene or pseudogene, based on sequence divergence and lack of expression  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function structural constituent of cytoskeleton|GO:0005200||ISS  product ACT9 (ACTIN 9); ATP binding / protein binding / structural constituent of cytoskeleton  note ACTIN 9 (ACT9); FUNCTIONS IN: protein binding, structural constituent of cytoskeleton, ATP binding; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: actin, putative (TAIR:AT2G42100.1); Has 10313 Blast hits to 9954 proteins in 2176 species: Archae - 4; Bacteria - 2; Metazoa - 4988; Fungi - 2129; Plants - 1104; Viruses - 2; Other Eukaryotes - 2084 (source: NCBI BLink).  protein_id AT2G42090.1p  transcript_id AT2G42090.1  protein_id AT2G42090.1p  transcript_id AT2G42090.1  
At2g42100	chr2:017560211	0.0	W/17560211-17560273,17560630-17561023,17561166-17561779,17561880-17561945	AT2G42100.1  CDS  gene_syn T6D20.1, T6D20_1  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component actin cytoskeleton|GO:0015629||ISS  go_process biological_process|GO:0008150||ND  go_function structural constituent of cytoskeleton|GO:0005200||ISS  product actin, putative  note actin, putative; FUNCTIONS IN: protein binding, structural constituent of cytoskeleton, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: actin cytoskeleton; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: ACT11 (actin-11); structural constituent of cytoskeleton (TAIR:AT3G12110.1); Has 11082 Blast hits to 10762 proteins in 2290 species: Archae - 6; Bacteria - 2; Metazoa - 4928; Fungi - 2964; Plants - 1098; Viruses - 2; Other Eukaryotes - 2082 (source: NCBI BLink).  protein_id AT2G42100.1p  transcript_id AT2G42100.1  protein_id AT2G42100.1p  transcript_id AT2G42100.1  
At2g42110	chr2:017562409	0.0	C/17562409-17562732,17562234-17562323	AT2G42110.1  CDS  gene_syn T24P15.2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; Has 13 Blast hits to 13 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G42110.1p  transcript_id AT2G42110.1  protein_id AT2G42110.1p  transcript_id AT2G42110.1  
At2g42120	chr2:017565909	0.0	C/17565909-17565965,17565648-17565777,17565352-17565458,17565146-17565272,17564890-17564997,17564680-17564795,17564525-17564608,17564358-17564426,17564197-17564268,17564023-17564114,17563794-17563921,17563593-17563694,17563434-17563501,17563282-17563344	AT2G42120.2  CDS  gene_syn DNA POLYMERASE DELTA SMALL SUBUNIT, POLD2, T24P15.3, T24P15_3  gene POLD2  go_component nucleus|GO:0005634||IEA  go_process DNA replication|GO:0006260||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed DNA polymerase activity|GO:0003887||IEA  product POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT); DNA binding / DNA-directed DNA polymerase  note DNA POLYMERASE DELTA SMALL SUBUNIT (POLD2); FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity; INVOLVED IN: DNA replication; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase alpha/epsilon, subunit B (InterPro:IPR007185); Has 462 Blast hits to 457 proteins in 184 species: Archae - 74; Bacteria - 0; Metazoa - 131; Fungi - 95; Plants - 26; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).  protein_id AT2G42120.2p  transcript_id AT2G42120.2  protein_id AT2G42120.2p  transcript_id AT2G42120.2  
At2g42120	chr2:017565909	0.0	C/17565909-17565965,17565648-17565780,17565352-17565458,17565146-17565272,17564890-17564997,17564680-17564795,17564525-17564608,17564358-17564426,17564197-17564268,17564023-17564114,17563794-17563921,17563593-17563694,17563434-17563501,17563282-17563344	AT2G42120.1  CDS  gene_syn DNA POLYMERASE DELTA SMALL SUBUNIT, POLD2, T24P15.3, T24P15_3  gene POLD2  go_component nucleus|GO:0005634||IEA  go_process DNA replication|GO:0006260||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed DNA polymerase activity|GO:0003887||IEA  product POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT); DNA binding / DNA-directed DNA polymerase  note DNA POLYMERASE DELTA SMALL SUBUNIT (POLD2); FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity; INVOLVED IN: DNA replication; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase alpha/epsilon, subunit B (InterPro:IPR007185); Has 462 Blast hits to 457 proteins in 184 species: Archae - 74; Bacteria - 0; Metazoa - 131; Fungi - 95; Plants - 26; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).  protein_id AT2G42120.1p  transcript_id AT2G42120.1  protein_id AT2G42120.1p  transcript_id AT2G42120.1  
At2g42130	chr2:017566242	0.0	W/17566242-17566475,17566811-17566932,17567019-17567102,17567190-17567286,17567376-17567592,17567676-17567728,17567824-17567916	AT2G42130.4  CDS  gene_syn T24P15.4, T24P15_4  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_component plastoglobule|GO:0010287|16461379|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58010.1); Has 98 Blast hits to 98 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G42130.4p  transcript_id AT2G42130.4  protein_id AT2G42130.4p  transcript_id AT2G42130.4  
At2g42130	chr2:017566242	0.0	W/17566242-17566475,17566811-17566932,17567019-17567102,17567190-17567286,17567376-17567592,17567676-17567728,17567828-17567830	AT2G42130.2  CDS  gene_syn T24P15.4, T24P15_4  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_component plastoglobule|GO:0010287|16461379|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58010.1); Has 76 Blast hits to 76 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G42130.2p  transcript_id AT2G42130.2  protein_id AT2G42130.2p  transcript_id AT2G42130.2  
At2g42130	chr2:017566242	0.0	W/17566242-17566475,17566811-17566932,17567019-17567102,17567190-17567286,17567376-17567651	AT2G42130.1  CDS  gene_syn T24P15.4, T24P15_4  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_component plastoglobule|GO:0010287|16461379|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58010.1); Has 52 Blast hits to 52 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G42130.1p  transcript_id AT2G42130.1  protein_id AT2G42130.1p  transcript_id AT2G42130.1  
At2g42130	chr2:017566389	0.0	W/17566389-17566475,17566748-17566932,17567019-17567102,17567190-17567286,17567376-17567592,17567676-17567728,17567824-17567916	AT2G42130.3  CDS  gene_syn T24P15.4, T24P15_4  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_component plastoglobule|GO:0010287|16461379|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast stroma, chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58010.1); Has 91 Blast hits to 91 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G42130.3p  transcript_id AT2G42130.3  protein_id AT2G42130.3p  transcript_id AT2G42130.3  
At2g42130	chr2:017566862	0.0	W/17566862-17566932,17567019-17567102,17567190-17567286,17567376-17567592,17567676-17567728,17567824-17567916	AT2G42130.5  CDS  gene_syn T24P15.4, T24P15_4  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_component plastoglobule|GO:0010287|16461379|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58010.1); Has 91 Blast hits to 91 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G42130.5p  transcript_id AT2G42130.5  protein_id AT2G42130.5p  transcript_id AT2G42130.5  
At2g42140	chr2:017568964	0.0	C/17568964-17569482	AT2G42140.1  CDS  gene_syn T24P15.5, T24P15_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product VQ motif-containing protein  note VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT3G58000.1); Has 34 Blast hits to 34 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G42140.1p  transcript_id AT2G42140.1  protein_id AT2G42140.1p  transcript_id AT2G42140.1  
At2g42150	chr2:017572463	0.0	W/17572463-17573359,17573566-17574564	AT2G42150.1  CDS  gene_syn T24P15.6, T24P15_6  go_function DNA binding|GO:0003677||IEA  go_component nucleus|GO:0005634||ISS  go_function DNA binding|GO:0003677||ISS  product DNA-binding bromodomain-containing protein  note DNA-binding bromodomain-containing protein; FUNCTIONS IN: DNA binding; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: LP.04 four leaves visible, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT3G57980.1); Has 2650 Blast hits to 2259 proteins in 195 species: Archae - 0; Bacteria - 50; Metazoa - 1639; Fungi - 246; Plants - 156; Viruses - 10; Other Eukaryotes - 549 (source: NCBI BLink).  protein_id AT2G42150.1p  transcript_id AT2G42150.1  protein_id AT2G42150.1p  transcript_id AT2G42150.1  
At2g42160	chr2:017577087	0.0	C/17577087-17577397,17576856-17576964,17576657-17576771,17576458-17576555,17576160-17576266,17575797-17576046,17575642-17575695,17575360-17575503,17575222-17575286,17575075-17575129,17574843-17575001	AT2G42160.1  CDS  gene_syn T24P15.7, T24P15_7  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function catalytic activity|GO:0003824||ISS  product zinc finger (ubiquitin-hydrolase) domain-containing protein  note zinc finger (ubiquitin-hydrolase) domain-containing protein; FUNCTIONS IN: protein binding, catalytic activity, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRCA1-associated 2 (InterPro:IPR011422), Zinc finger, UBP-type (InterPro:IPR001607), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G26000.2); Has 920 Blast hits to 905 proteins in 150 species: Archae - 0; Bacteria - 7; Metazoa - 531; Fungi - 172; Plants - 57; Viruses - 0; Other Eukaryotes - 153 (source: NCBI BLink).  protein_id AT2G42160.1p  transcript_id AT2G42160.1  protein_id AT2G42160.1p  transcript_id AT2G42160.1  
At2g42170	chr2:017578683	0.0	W/17578683-17579001,17579457-17580061,17580157-17580222	AT2G42170.1  CDS  gene_syn T24P15.8  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component actin cytoskeleton|GO:0015629||ISS  go_process biological_process|GO:0008150||ND  go_function structural constituent of cytoskeleton|GO:0005200||ISS  product actin, putative  note actin, putative; FUNCTIONS IN: protein binding, structural constituent of cytoskeleton, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: actin cytoskeleton; EXPRESSED IN: vascular bundle; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: actin, putative (TAIR:AT2G42100.1); Has 10012 Blast hits to 9731 proteins in 2148 species: Archae - 6; Bacteria - 2; Metazoa - 4862; Fungi - 1981; Plants - 1100; Viruses - 2; Other Eukaryotes - 2059 (source: NCBI BLink).  protein_id AT2G42170.1p  transcript_id AT2G42170.1  protein_id AT2G42170.1p  transcript_id AT2G42170.1  
At2g42180	chr2:017581133	0.0	C/17581133-17581633	AT2G42180.1  CDS  gene_syn T24P15.9, T24P15_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57950.1); Has 36 Blast hits to 36 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G42180.1p  transcript_id AT2G42180.1  protein_id AT2G42180.1p  transcript_id AT2G42180.1  
At2g42190	chr2:017583625	0.0	W/17583625-17584050	AT2G42190.1  CDS  gene_syn T24P15.10, T24P15_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57930.2); Has 1547 Blast hits to 1273 proteins in 149 species: Archae - 3; Bacteria - 22; Metazoa - 907; Fungi - 124; Plants - 90; Viruses - 30; Other Eukaryotes - 371 (source: NCBI BLink).  protein_id AT2G42190.1p  transcript_id AT2G42190.1  protein_id AT2G42190.1p  transcript_id AT2G42190.1  
At2g42200	chr2:017587601	0.0	W/17587601-17587959,17588607-17588752,17588829-17589451	AT2G42200.1  CDS  gene_syn SPL9, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9, T24P15.11, T24P15_11  gene SPL9  function Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expresssion is regulated by MIR156b.  go_component nucleus|GO:0005634||IEA  go_process vegetative to reproductive phase transition|GO:0010228|18278578|IGI  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9); transcription factor  note SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9 (SPL9); FUNCTIONS IN: transcription factor activity; INVOLVED IN: vegetative to reproductive phase transition, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: SPL15 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15); DNA binding / transcription factor (TAIR:AT3G57920.1); Has 3422 Blast hits to 2844 proteins in 125 species: Archae - 2; Bacteria - 75; Metazoa - 110; Fungi - 110; Plants - 567; Viruses - 2; Other Eukaryotes - 2556 (source: NCBI BLink).  protein_id AT2G42200.1p  transcript_id AT2G42200.1  protein_id AT2G42200.1p  transcript_id AT2G42200.1  
At2g42210	chr2:017590600	0.0	W/17590600-17590972,17591443-17591591	AT2G42210.2  CDS  gene_syn ATOEP16-3, OEP16-3, T24P15.12, T24P15_12  gene OEP16-3  function Homologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family.  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process protein transport|GO:0015031||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744||ISS  go_component plastid outer membrane|GO:0009527|14769929|ISS  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process protein transport|GO:0015031||ISS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein  note OEP16-3; FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial import inner membrane translocase, subunit Tim17/22 (InterPro:IPR003397); Has 203 Blast hits to 203 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 112; Plants - 67; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G42210.2p  transcript_id AT2G42210.2  protein_id AT2G42210.2p  transcript_id AT2G42210.2  
At2g42210	chr2:017590642	0.0	W/17590642-17590972,17591443-17591591	AT2G42210.1  CDS  gene_syn ATOEP16-3, OEP16-3, T24P15.12, T24P15_12  gene OEP16-3  function Homologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family.  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process protein transport|GO:0015031||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744||ISS  go_component plastid outer membrane|GO:0009527|14769929|ISS  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process protein transport|GO:0015031||ISS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein  note OEP16-3; FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial import inner membrane translocase, subunit Tim17/22 (InterPro:IPR003397); Has 203 Blast hits to 203 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 112; Plants - 67; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G42210.1p  transcript_id AT2G42210.1  protein_id AT2G42210.1p  transcript_id AT2G42210.1  
At2g42210	chr2:017590642	0.0	W/17590642-17590972,17591443-17591591	AT2G42210.3  CDS  gene_syn ATOEP16-3, OEP16-3, T24P15.12, T24P15_12  gene OEP16-3  function Homologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family.  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process protein transport|GO:0015031||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744||ISS  go_component plastid outer membrane|GO:0009527|14769929|ISS  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process protein transport|GO:0015031||ISS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein  note OEP16-3; FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial import inner membrane translocase, subunit Tim17/22 (InterPro:IPR003397); Has 203 Blast hits to 203 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 112; Plants - 67; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G42210.3p  transcript_id AT2G42210.3  protein_id AT2G42210.3p  transcript_id AT2G42210.3  
At2g42210	chr2:017590642	0.0	W/17590642-17590972,17591443-17591591	AT2G42210.4  CDS  gene_syn ATOEP16-3, OEP16-3, T24P15.12, T24P15_12  gene OEP16-3  function Homologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family.  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process protein transport|GO:0015031||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744||ISS  go_component plastid outer membrane|GO:0009527|14769929|ISS  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process protein transport|GO:0015031||ISS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein  note OEP16-3; FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial import inner membrane translocase, subunit Tim17/22 (InterPro:IPR003397); Has 203 Blast hits to 203 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 112; Plants - 67; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G42210.4p  transcript_id AT2G42210.4  protein_id AT2G42210.4p  transcript_id AT2G42210.4  
At2g42220	chr2:017592105	0.0	W/17592105-17592151,17592270-17592520,17592611-17592761,17592856-17592941,17593047-17593151,17593241-17593305	AT2G42220.1  CDS  gene_syn T24P15.13, T24P15_13  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product rhodanese-like domain-containing protein  note rhodanese-like domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: rhodanese-like domain-containing protein (TAIR:AT3G08920.1); Has 686 Blast hits to 686 proteins in 102 species: Archae - 12; Bacteria - 169; Metazoa - 1; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 390 (source: NCBI BLink).  protein_id AT2G42220.1p  transcript_id AT2G42220.1  protein_id AT2G42220.1p  transcript_id AT2G42220.1  
At2g42230	chr2:017596078	0.0	C/17596078-17596563,17595662-17595802,17595157-17595537,17594951-17595055,17594723-17594863,17594241-17594444,17594041-17594133,17593807-17593944	AT2G42230.1  CDS  gene_syn T24P15.14, T24P15_14  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product tubulin-specific chaperone C-related  note tubulin-specific chaperone C-related; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: CARP motif (InterPro:IPR006599), C-CAP/cofactor C-like domain (InterPro:IPR017901), Tubulin binding cofactor C (InterPro:IPR012945); BEST Arabidopsis thaliana protein match is: tubulin-specific chaperone C-related (TAIR:AT3G57890.1); Has 235 Blast hits to 235 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT2G42230.1p  transcript_id AT2G42230.1  protein_id AT2G42230.1p  transcript_id AT2G42230.1  
At2g42230	chr2:017596078	0.0	C/17596078-17596563,17595662-17595802,17595157-17595537,17594951-17595055,17594723-17594863,17594241-17594444,17594041-17594133,17593833-17593944,17593705-17593748	AT2G42230.2  CDS  gene_syn T24P15.14, T24P15_14  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product tubulin-specific chaperone C-related  note tubulin-specific chaperone C-related; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: CARP motif (InterPro:IPR006599), C-CAP/cofactor C-like domain (InterPro:IPR017901), Tubulin binding cofactor C (InterPro:IPR012945); BEST Arabidopsis thaliana protein match is: tubulin-specific chaperone C-related (TAIR:AT3G57890.1); Has 235 Blast hits to 235 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT2G42230.2p  transcript_id AT2G42230.2  protein_id AT2G42230.2p  transcript_id AT2G42230.2  
At2g42240	chr2:017596844	0.0	W/17596844-17597107,17597198-17597260,17597472-17597556,17597655-17597711,17597957-17598029,17598260-17598308,17598422-17598510,17598580-17598649,17598753-17598838,17598930-17598972	AT2G42240.1  CDS  gene_syn T24P15.15, T24P15_15  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product nucleic acid binding / nucleotide binding  note nucleic acid binding / nucleotide binding; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein, putative (TAIR:AT3G13700.2); Has 529 Blast hits to 495 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 251; Fungi - 136; Plants - 113; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT2G42240.1p  transcript_id AT2G42240.1  protein_id AT2G42240.1p  transcript_id AT2G42240.1  
At2g42240	chr2:017596844	0.0	W/17596844-17597107,17597198-17597260,17597472-17597556,17597655-17597711,17597957-17598029,17598260-17598308,17598422-17598510,17598580-17598649,17598753-17598838,17598939-17598972	AT2G42240.3  CDS  gene_syn T24P15.15, T24P15_15  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product nucleic acid binding / nucleotide binding  note nucleic acid binding / nucleotide binding; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein, putative (TAIR:AT3G13700.2); Has 498 Blast hits to 470 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 247; Fungi - 128; Plants - 94; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT2G42240.3p  transcript_id AT2G42240.3  protein_id AT2G42240.3p  transcript_id AT2G42240.3  
At2g42240	chr2:017596844	0.0	W/17596844-17597107,17597198-17597260,17597472-17597556,17597655-17597711,17597957-17598029,17598260-17598308,17598422-17598510,17598580-17598649,17598753-17598911	AT2G42240.2  CDS  gene_syn T24P15.15, T24P15_15  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product nucleic acid binding / nucleotide binding  note nucleic acid binding / nucleotide binding; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein, putative (TAIR:AT3G13700.2); Has 509 Blast hits to 470 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 247; Fungi - 130; Plants - 103; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT2G42240.2p  transcript_id AT2G42240.2  protein_id AT2G42240.2p  transcript_id AT2G42240.2  
At2g42247	chr2:017599370	0.0	W/17599370-17601825	AT2G42247.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G42250  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G42247.1  
At2g42250	chr2:017600795	0.0	C/17600795-17601709,17600075-17600704	AT2G42250.1  CDS  gene_syn CYP712A1, T24P15.16, T24P15_16  gene CYP712A1  function member of CYP712A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP712A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP712A1; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP712A2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT5G06905.1); Has 23956 Blast hits to 23808 proteins in 1276 species: Archae - 23; Bacteria - 2256; Metazoa - 10447; Fungi - 4563; Plants - 5745; Viruses - 6; Other Eukaryotes - 916 (source: NCBI BLink).  protein_id AT2G42250.1p  transcript_id AT2G42250.1  protein_id AT2G42250.1p  transcript_id AT2G42250.1  
At2g42260	chr2:017602894	0.0	C/17602894-17603283,17602240-17602629	AT2G42260.1  CDS  gene_syn POLYCHOME, PYM, T24P15.17, T24P15_17, UV-B-INSENSITIVE 4, UVI4  gene UVI4  function Encodes a novel plant-specific protein of unknown function. The UVI4 gene is expressed mainly in actively dividing cells. The hypocotyl cells in mutant seedlings undergo one extra round of endoreduplication. The uvi4 mutation also promoted the progression of endo-reduplication during leaf development.  go_component cellular_component|GO:0005575||ND  go_process trichome branching|GO:0010091|10224275|IMP  go_process trichome branching|GO:0010091|16623893|IMP  go_process response to UV-B|GO:0010224|16623893|IMP  go_process DNA endoreduplication|GO:0042023|10224275|IMP  go_process DNA endoreduplication|GO:0042023|16623893|IMP  go_function molecular_function|GO:0003674||ND  product UVI4 (UV-B-INSENSITIVE 4)  note UV-B-INSENSITIVE 4 (UVI4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: trichome branching, response to UV-B, DNA endoreduplication; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf vascular system, root tip; BEST Arabidopsis thaliana protein match is: UVI4-LIKE (UV-B-INSENSITIVE 4-LIKE) (TAIR:AT3G57860.1); Has 28 Blast hits to 28 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G42260.1p  transcript_id AT2G42260.1  protein_id AT2G42260.1p  transcript_id AT2G42260.1  
At2g42270	chr2:017604330	0.0	W/17604330-17610848	AT2G42270.1  CDS  gene_syn T24P15.18, T24P15_18  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATP-dependent helicase activity|GO:0008026||ISS  product U5 small nuclear ribonucleoprotein helicase, putative  note U5 small nuclear ribonucleoprotein helicase, putative; FUNCTIONS IN: in 6 functions; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: emb1507 (embryo defective 1507); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding / nucleoside-triphosphatase/ nucleotide binding (TAIR:AT1G20960.1); Has 13381 Blast hits to 8246 proteins in 1082 species: Archae - 1064; Bacteria - 4051; Metazoa - 2407; Fungi - 1500; Plants - 518; Viruses - 50; Other Eukaryotes - 3791 (source: NCBI BLink).  protein_id AT2G42270.1p  transcript_id AT2G42270.1  protein_id AT2G42270.1p  transcript_id AT2G42270.1  
At2g42280	chr2:017612716	0.0	C/17612716-17613163,17612195-17612451,17611891-17612088	AT2G42280.2  CDS  gene_syn T24P15.19, T24P15_19  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT1G05805.1); Has 79 Blast hits to 79 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G42280.2p  transcript_id AT2G42280.2  protein_id AT2G42280.2p  transcript_id AT2G42280.2  
At2g42280	chr2:017612716	0.0	C/17612716-17613163,17612195-17612451,17611909-17612088,17611730-17611795,17611577-17611645,17611428-17611487	AT2G42280.1  CDS  gene_syn T24P15.19, T24P15_19  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT1G51140.1); Has 932 Blast hits to 932 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 924; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G42280.1p  transcript_id AT2G42280.1  protein_id AT2G42280.1p  transcript_id AT2G42280.1  
At2g42290	chr2:017618170	0.0	C/17618170-17619472,17616992-17617629	AT2G42290.1  CDS  gene_syn MHK10.1, MHK10_1  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT3G57830.1); Has 80414 Blast hits to 56151 proteins in 1610 species: Archae - 49; Bacteria - 4846; Metazoa - 22855; Fungi - 3117; Plants - 39923; Viruses - 162; Other Eukaryotes - 9462 (source: NCBI BLink).  protein_id AT2G42290.1p  transcript_id AT2G42290.1  protein_id AT2G42290.1p  transcript_id AT2G42290.1  
At2g42300	chr2:017621542	0.0	W/17621542-17622030,17622114-17622227,17622309-17622374,17623441-17623509,17623634-17623705,17624462-17624635	AT2G42300.1  CDS  gene_syn MHK10.2, MHK10_2  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT3G57800.2); Has 1141 Blast hits to 1141 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 3; Plants - 1128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G42300.1p  transcript_id AT2G42300.1  protein_id AT2G42300.1p  transcript_id AT2G42300.1  
At2g42300	chr2:017621542	0.0	W/17621542-17622030,17622114-17622227,17622309-17622378,17623441-17623469	AT2G42300.2  CDS  gene_syn MHK10.2, MHK10_2  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT3G57800.2); Has 658 Blast hits to 658 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 656; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G42300.2p  transcript_id AT2G42300.2  protein_id AT2G42300.2p  transcript_id AT2G42300.2  
At2g42310	chr2:017625251	0.0	W/17625251-17625595	AT2G42310.1  CDS  gene_syn MHK10.3, MHK10_3  go_component mitochondrion|GO:0005739|12837548|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, respiratory chain complex I; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57785.1); Has 77 Blast hits to 77 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 32; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G42310.1p  transcript_id AT2G42310.1  protein_id AT2G42310.1p  transcript_id AT2G42310.1  
At2g42320	chr2:017628102	0.0	W/17628102-17628886,17628995-17629250,17629347-17629556,17629630-17629803,17629894-17630079,17630170-17630286,17630376-17630657	AT2G42320.1  CDS  gene_syn MHK10.4, MHK10_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product nucleolar protein gar2-related  note nucleolar protein gar2-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57780.1); Has 14859 Blast hits to 1183 proteins in 163 species: Archae - 2; Bacteria - 13668; Metazoa - 593; Fungi - 163; Plants - 67; Viruses - 6; Other Eukaryotes - 360 (source: NCBI BLink).  protein_id AT2G42320.1p  transcript_id AT2G42320.1  protein_id AT2G42320.1p  transcript_id AT2G42320.1  
At2g42320	chr2:017628102	0.0	W/17628102-17628886,17628995-17629250,17629347-17629556,17629630-17629803,17629894-17630079,17630170-17630286,17630376-17630657	AT2G42320.2  CDS  gene_syn MHK10.4, MHK10_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product nucleolar protein gar2-related  note nucleolar protein gar2-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57780.1); Has 14859 Blast hits to 1183 proteins in 163 species: Archae - 2; Bacteria - 13668; Metazoa - 593; Fungi - 163; Plants - 67; Viruses - 6; Other Eukaryotes - 360 (source: NCBI BLink).  protein_id AT2G42320.2p  transcript_id AT2G42320.2  protein_id AT2G42320.2p  transcript_id AT2G42320.2  
At2g42330	chr2:017631831	0.0	C/17631831-17634089	AT2G42330.1  CDS  gene_syn MHK10.5, MHK10_5  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component intracellular|GO:0005622||ISS  go_function nucleic acid binding|GO:0003676||ISS  product D111/G-patch domain-containing protein  note D111/G-patch domain-containing protein; FUNCTIONS IN: nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tuftelin interacting protein 11 (InterPro:IPR014809), D111/G-patch (InterPro:IPR000467); BEST Arabidopsis thaliana protein match is: D111/G-patch domain-containing protein (TAIR:AT1G17070.1); Has 829 Blast hits to 820 proteins in 145 species: Archae - 0; Bacteria - 1; Metazoa - 571; Fungi - 84; Plants - 86; Viruses - 3; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT2G42330.1p  transcript_id AT2G42330.1  protein_id AT2G42330.1p  transcript_id AT2G42330.1  
At2g42330	chr2:017631831	0.0	C/17631831-17634089	AT2G42330.2  CDS  gene_syn MHK10.5, MHK10_5  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component intracellular|GO:0005622||ISS  go_function nucleic acid binding|GO:0003676||ISS  product D111/G-patch domain-containing protein  note D111/G-patch domain-containing protein; FUNCTIONS IN: nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tuftelin interacting protein 11 (InterPro:IPR014809), D111/G-patch (InterPro:IPR000467); BEST Arabidopsis thaliana protein match is: D111/G-patch domain-containing protein (TAIR:AT1G17070.1); Has 829 Blast hits to 820 proteins in 145 species: Archae - 0; Bacteria - 1; Metazoa - 571; Fungi - 84; Plants - 86; Viruses - 3; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT2G42330.2p  transcript_id AT2G42330.2  protein_id AT2G42330.2p  transcript_id AT2G42330.2  
At2g42340	chr2:017637568	0.0	C/17637568-17637622,17636887-17637147,17636545-17636792,17636100-17636307,17635307-17635584	AT2G42340.1  CDS  gene_syn MHK10.6, MHK10_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl; Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 4; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G42340.1p  transcript_id AT2G42340.1  protein_id AT2G42340.1p  transcript_id AT2G42340.1  
At2g42350	chr2:017639245	0.0	W/17639245-17639898	AT2G42350.1  CDS  gene_syn MHK10.7, MHK10_7  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: stem, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G42360.1); Has 6482 Blast hits to 6462 proteins in 226 species: Archae - 0; Bacteria - 0; Metazoa - 2253; Fungi - 456; Plants - 2735; Viruses - 53; Other Eukaryotes - 985 (source: NCBI BLink).  protein_id AT2G42350.1p  transcript_id AT2G42350.1  protein_id AT2G42350.1p  transcript_id AT2G42350.1  
At2g42360	chr2:017640907	0.0	W/17640907-17641617	AT2G42360.1  CDS  gene_syn MHK10.8, MHK10_8  go_function ubiquitin-protein ligase activity|GO:0004842|15644464|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; EXPRESSED IN: stem, leaf whorl, sepal, stamen, leaf; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G42350.1); Has 5888 Blast hits to 5866 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 1920; Fungi - 442; Plants - 2563; Viruses - 54; Other Eukaryotes - 909 (source: NCBI BLink).  protein_id AT2G42360.1p  transcript_id AT2G42360.1  protein_id AT2G42360.1p  transcript_id AT2G42360.1  
At2g42365	chr2:017641784	0.0	C/17641784-17645835	AT2G42365.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G42360 and AT2G42370  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G42365.1  
At2g42365	chr2:017641908	0.0	C/17641908-17642975	AT2G42365.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G42360 and AT2G42370  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G42365.2  
At2g42370	chr2:017643334	0.0	W/17643334-17644501,17644554-17645533	AT2G42370.1  CDS  gene_syn MHK10.9, MHK10_9  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58110.1); Has 174 Blast hits to 159 proteins in 47 species: Archae - 3; Bacteria - 17; Metazoa - 67; Fungi - 5; Plants - 22; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT2G42370.1p  transcript_id AT2G42370.1  protein_id AT2G42370.1p  transcript_id AT2G42370.1  
At2g42380	chr2:017648086	0.0	C/17648086-17648660,17647815-17647905,17647574-17647700,17647205-17647377	AT2G42380.2  CDS  gene_syn ATBZIP34, BZIP34, MHK10.10, MHK10_10  gene BZIP34  function Encodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP61. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634|17719007|IDA  go_function DNA binding|GO:0003677|17719007|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription activator activity|GO:0016563|17719007|IDA  product bZIP transcription factor family protein  note BZIP34; FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: male gametophyte, flower, carpel; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: BZIP61; DNA binding / transcription activator/ transcription factor (TAIR:AT3G58120.1); Has 10840 Blast hits to 4448 proteins in 150 species: Archae - 9; Bacteria - 32; Metazoa - 825; Fungi - 277; Plants - 808; Viruses - 11; Other Eukaryotes - 8878 (source: NCBI BLink).  protein_id AT2G42380.2p  transcript_id AT2G42380.2  protein_id AT2G42380.2p  transcript_id AT2G42380.2  
At2g42380	chr2:017648086	0.0	C/17648086-17648660,17647835-17647905,17647574-17647687,17647205-17647377	AT2G42380.1  CDS  gene_syn ATBZIP34, BZIP34, MHK10.10, MHK10_10  gene BZIP34  function Encodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP61. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634|17719007|IDA  go_function DNA binding|GO:0003677|17719007|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription activator activity|GO:0016563|17719007|IDA  product bZIP transcription factor family protein  note BZIP34; FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: male gametophyte, flower, carpel; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: BZIP61; DNA binding / transcription activator/ transcription factor (TAIR:AT3G58120.1); Has 10497 Blast hits to 4109 proteins in 116 species: Archae - 7; Bacteria - 23; Metazoa - 815; Fungi - 245; Plants - 545; Viruses - 11; Other Eukaryotes - 8851 (source: NCBI BLink).  protein_id AT2G42380.1p  transcript_id AT2G42380.1  protein_id AT2G42380.1p  transcript_id AT2G42380.1  
At2g42388	chr2:017650225	0.0	W/17650225-17651083	AT2G42388.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G42388.1  
At2g42390	chr2:017652416	0.0	C/17652416-17652509,17652207-17652320,17651932-17652027,17651611-17651805,17651381-17651520	AT2G42390.1  CDS  gene_syn MHK10.11, MHK10_11  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product protein kinase C substrate, heavy chain-related  note protein kinase C substrate, heavy chain-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: calmodulin-binding protein (TAIR:AT5G56360.1); Has 464 Blast hits to 443 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 290; Fungi - 79; Plants - 29; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT2G42390.1p  transcript_id AT2G42390.1  protein_id AT2G42390.1p  transcript_id AT2G42390.1  
At2g42395	chr2:017653903	0.0	C/17653903-17653980,17653566-17653802	AT2G42395.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G42395.1p  transcript_id AT2G42395.1  protein_id AT2G42395.1p  transcript_id AT2G42395.1  
At2g42400	chr2:017656078	0.0	C/17656078-17656281,17655758-17655961,17655042-17655570,17654490-17654905	AT2G42400.1  CDS  gene_syn ATVOZ2, MHK10.12, MHK10_12, VASCULAR PLANT ONE ZINC FINGER PROTEIN 2, VOZ2  gene VOZ2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transcription activator activity|GO:0016563|15295067|IDA  product VOZ2 (VASCULAR PLANT ONE ZINC FINGER PROTEIN 2); transcription activator  note VASCULAR PLANT ONE ZINC FINGER PROTEIN 2 (VOZ2); FUNCTIONS IN: transcription activator activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN); transcription activator (TAIR:AT1G28520.2); Has 49 Blast hits to 43 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G42400.1p  transcript_id AT2G42400.1  protein_id AT2G42400.1p  transcript_id AT2G42400.1  
At2g42410	chr2:017658150	0.0	W/17658150-17658794	AT2G42410.1  CDS  gene_syn ATZFP11, MHK10.13, MHK10_13, ZFP11, ZINC FINGER PROTEIN 11  gene ZFP11  function Encodes a zinc finger protein ZFP11. Overexpression of ZFP11 causes mortality and a deformed phenotype.  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product ZFP11 (ZINC FINGER PROTEIN 11); nucleic acid binding / transcription factor/ zinc ion binding  note ZINC FINGER PROTEIN 11 (ZFP11); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: SUP (SUPERMAN); DNA binding / nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT3G23130.1); Has 331 Blast hits to 329 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 331; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G42410.1p  transcript_id AT2G42410.1  protein_id AT2G42410.1p  transcript_id AT2G42410.1  
At2g42420	chr2:017660778	0.0	W/17660778-17660848	AT2G42420.1  tRNA  gene_syn 48846.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: GCC)  transcript_id AT2G42420.1  
At2g42425	chr2:017661834	0.0	C/17661834-17662358	AT2G42425.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G42425.1  
At2g42430	chr2:017663668	0.0	W/17663668-17663970,17664719-17665153	AT2G42430.1  CDS  gene_syn ASL18, ASYMMETRIC LEAVES2-LIKE 18, LATERAL ORGAN BOUNDARIES-DOMAIN 16, LBD16, MHK10.15, MHK10_15  gene LBD16  function LOB-domain protein gene LBD16. This gene contains one auxin-responsive element (AuxRE).  go_component nucleus|GO:0005634|17259263|IDA  go_process response to auxin stimulus|GO:0009733|17259263|IEP  go_process lateral root formation|GO:0010311|17259263|IMP  product LBD16 (LATERAL ORGAN BOUNDARIES-DOMAIN 16)  note LATERAL ORGAN BOUNDARIES-DOMAIN 16 (LBD16); INVOLVED IN: response to auxin stimulus, lateral root formation; LOCATED IN: nucleus; EXPRESSED IN: leaf lamina base, root, leaf; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD29 (LATERAL ORGAN BOUNDARIES-DOMAIN 29) (TAIR:AT3G58190.1); Has 539 Blast hits to 536 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 539; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G42430.1p  transcript_id AT2G42430.1  protein_id AT2G42430.1p  transcript_id AT2G42430.1  
At2g42440	chr2:017669472	0.0	C/17669472-17669750,17668888-17669343	AT2G42440.1  CDS  gene_syn MHK10.16, MHK10_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD29 (LATERAL ORGAN BOUNDARIES-DOMAIN 29) (TAIR:AT3G58190.1); Has 322 Blast hits to 322 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 322; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G42440.1p  transcript_id AT2G42440.1  protein_id AT2G42440.1p  transcript_id AT2G42440.1  
At2g42450	chr2:017674815	0.0	C/17674815-17674854,17674234-17674557,17673963-17674150,17673526-17673876,17673243-17673443,17673081-17673151,17672860-17672999,17672425-17672750	AT2G42450.1  CDS  gene_syn MHK10.17, MHK10_17  go_component mitochondrion|GO:0005739||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product lipase class 3 family protein  note lipase class 3 family protein; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: lipase class 3 family protein (TAIR:AT3G14075.1); Has 655 Blast hits to 654 proteins in 144 species: Archae - 0; Bacteria - 7; Metazoa - 166; Fungi - 228; Plants - 148; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).  protein_id AT2G42450.1p  transcript_id AT2G42450.1  protein_id AT2G42450.1p  transcript_id AT2G42450.1  
At2g42460	chr2:017679141	0.0	C/17679141-17679244,17678852-17679012,17678532-17678737,17678057-17678443,17676813-17676941,17676399-17676737	AT2G42460.1  CDS  gene_syn MHK10.18, MHK10_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT2G42470.1); Has 399 Blast hits to 285 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 28; Plants - 347; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT2G42460.1p  transcript_id AT2G42460.1  protein_id AT2G42460.1p  transcript_id AT2G42460.1  
At2g42470	chr2:017685012	0.0	C/17685012-17685187,17684727-17684875,17684428-17684633,17683903-17684323,17682280-17682404,17681914-17682189,17681307-17681506,17681066-17681226,17680682-17680947,17679887-17680603	AT2G42470.1  CDS  gene_syn MHK10.19, MHK10_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT2G42460.1); Has 3384 Blast hits to 2391 proteins in 263 species: Archae - 43; Bacteria - 164; Metazoa - 1656; Fungi - 277; Plants - 685; Viruses - 11; Other Eukaryotes - 548 (source: NCBI BLink).  protein_id AT2G42470.1p  transcript_id AT2G42470.1  protein_id AT2G42470.1p  transcript_id AT2G42470.1  
At2g42480	chr2:017689751	0.0	C/17689751-17689851,17689474-17689637,17688910-17689154,17688205-17688816,17686998-17687131,17686700-17686860,17685805-17686619	AT2G42480.1  CDS  gene_syn MHK10.20, MHK10_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT2G42470.1); Has 16767 Blast hits to 10802 proteins in 713 species: Archae - 325; Bacteria - 1644; Metazoa - 6672; Fungi - 1087; Plants - 863; Viruses - 68; Other Eukaryotes - 6108 (source: NCBI BLink).  protein_id AT2G42480.1p  transcript_id AT2G42480.1  protein_id AT2G42480.1p  transcript_id AT2G42480.1  
At2g42485	chr2:017690531	0.0	W/17690531-17691018	AT2G42485.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G42485.1  
At2g42490	chr2:017695322	0.0	C/17695322-17695526,17695000-17695109,17694611-17694916,17694401-17694513,17693990-17694320,17693691-17693906,17693380-17693616,17692931-17693116,17692601-17692741,17692001-17692269,17691826-17691907,17691600-17691734	AT2G42490.1  CDS  gene_syn MHK10.21, MHK10_21  go_process cellular amine metabolic process|GO:0009308||IEA  go_function copper ion binding|GO:0005507||IEA  go_function amine oxidase activity|GO:0008131||IEA  go_function quinone binding|GO:0048038||IEA  go_function copper ion binding|GO:0005507||ISS  product copper amine oxidase, putative  note copper amine oxidase, putative; FUNCTIONS IN: quinone binding, amine oxidase activity, copper ion binding; INVOLVED IN: cellular amine metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal region (InterPro:IPR016182), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: copper amine oxidase, putative (TAIR:AT3G43670.1); Has 1087 Blast hits to 1084 proteins in 164 species: Archae - 4; Bacteria - 240; Metazoa - 211; Fungi - 291; Plants - 130; Viruses - 0; Other Eukaryotes - 211 (source: NCBI BLink).  protein_id AT2G42490.1p  transcript_id AT2G42490.1  protein_id AT2G42490.1p  transcript_id AT2G42490.1  
At2g42500	chr2:017701134	0.0	C/17701134-17701226,17700103-17700174,17699835-17699906,17699554-17699594,17699176-17699242,17698643-17698834,17698454-17698543,17698258-17698365,17698099-17698164	AT2G42500.2  CDS  gene_syn MHK10.22, PP2A-4  gene PP2A-4  function encodes the fourth isoform of the catalytic subunit of protein phosphatase 2A.  go_component plasma membrane|GO:0005886|17317660|IDA  go_function hydrolase activity|GO:0016787||IEA  go_component nucleus|GO:0005634|15469496|IDA  go_component cytoplasm|GO:0005737|15469496|IDA  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PP2A-4; hydrolase/ protein serine/threonine phosphatase  note PP2A-4; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: PP2A-3 (PROTEIN PHOSPHATASE 2A-3); protein serine/threonine phosphatase (TAIR:AT3G58500.1); Has 5070 Blast hits to 4980 proteins in 296 species: Archae - 49; Bacteria - 24; Metazoa - 2016; Fungi - 894; Plants - 602; Viruses - 0; Other Eukaryotes - 1485 (source: NCBI BLink).  protein_id AT2G42500.2p  transcript_id AT2G42500.2  protein_id AT2G42500.2p  transcript_id AT2G42500.2  
At2g42500	chr2:017701134	0.0	C/17701134-17701226,17700468-17700524,17700253-17700336,17700103-17700174,17699835-17699906,17699554-17699594,17699176-17699242,17698643-17698834,17698454-17698543,17698258-17698365,17698099-17698164	AT2G42500.1  CDS  gene_syn MHK10.22, PP2A-4  gene PP2A-4  function encodes the fourth isoform of the catalytic subunit of protein phosphatase 2A.  go_component plasma membrane|GO:0005886|17317660|IDA  go_function hydrolase activity|GO:0016787||IEA  go_component nucleus|GO:0005634|15469496|IDA  go_component cytoplasm|GO:0005737|15469496|IDA  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PP2A-4; hydrolase/ protein serine/threonine phosphatase  note PP2A-4; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: PP2A-3 (PROTEIN PHOSPHATASE 2A-3); protein serine/threonine phosphatase (TAIR:AT3G58500.1); Has 5281 Blast hits to 5152 proteins in 351 species: Archae - 49; Bacteria - 118; Metazoa - 2044; Fungi - 931; Plants - 617; Viruses - 1; Other Eukaryotes - 1521 (source: NCBI BLink).  protein_id AT2G42500.1p  transcript_id AT2G42500.1  protein_id AT2G42500.1p  transcript_id AT2G42500.1  
At2g42510	chr2:017701686	0.0	W/17701686-17702830,17702912-17702970,17703060-17703187	AT2G42510.3  CDS  gene_syn F14N22.22, F14N22_22  go_process spliceosome assembly|GO:0000245||IEA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Survival motor neuron interacting protein 1 (InterPro:IPR007022); BEST Arabidopsis thaliana protein match is: spliceosome protein-related (TAIR:AT1G54380.1).  protein_id AT2G42510.3p  transcript_id AT2G42510.3  protein_id AT2G42510.3p  transcript_id AT2G42510.3  
At2g42510	chr2:017701686	0.0	W/17701686-17702860,17702912-17702970,17703727-17703868,17703948-17704111,17704197-17704255	AT2G42510.1  CDS  gene_syn F14N22.22, F14N22_22  go_process spliceosome assembly|GO:0000245||IEA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Survival motor neuron interacting protein 1 (InterPro:IPR007022); BEST Arabidopsis thaliana protein match is: spliceosome protein-related (TAIR:AT1G54380.1); Has 294 Blast hits to 263 proteins in 60 species: Archae - 2; Bacteria - 35; Metazoa - 52; Fungi - 12; Plants - 28; Viruses - 0; Other Eukaryotes - 165 (source: NCBI BLink).  protein_id AT2G42510.1p  transcript_id AT2G42510.1  protein_id AT2G42510.1p  transcript_id AT2G42510.1  
At2g42510	chr2:017701686	0.0	W/17701686-17702943,17703311-17703340,17703727-17703868,17703948-17704163,17704303-17704618	AT2G42510.2  CDS  gene_syn F14N22.22, F14N22_22  go_process spliceosome assembly|GO:0000245||IEA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Survival motor neuron interacting protein 1 (InterPro:IPR007022); BEST Arabidopsis thaliana protein match is: spliceosome protein-related (TAIR:AT1G54380.1).  protein_id AT2G42510.2p  transcript_id AT2G42510.2  protein_id AT2G42510.2p  transcript_id AT2G42510.2  
At2g42520	chr2:017705382	0.0	W/17705382-17706137,17706224-17706307,17706630-17706872,17707545-17707712,17707857-17707970,17708208-17708744	AT2G42520.1  CDS  gene_syn F14N22.21, F14N22_21  go_component peroxisome|GO:0005777|17951448|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD box RNA helicase, putative  note DEAD box RNA helicase, putative; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase, putative (RH11) (TAIR:AT3G58510.3); Has 117650 Blast hits to 50544 proteins in 2350 species: Archae - 648; Bacteria - 42278; Metazoa - 35917; Fungi - 8309; Plants - 12031; Viruses - 966; Other Eukaryotes - 17501 (source: NCBI BLink).  protein_id AT2G42520.1p  transcript_id AT2G42520.1  protein_id AT2G42520.1p  transcript_id AT2G42520.1  
At2g42530	chr2:017709677	0.0	C/17709677-17709873,17709191-17709419	AT2G42530.1  CDS  gene_syn COLD REGULATED 15B, COR15B, F14N22.20, F14N22_20  gene COR15B  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process response to cold|GO:0009409||ISS  product COR15B (COLD REGULATED 15B)  note COLD REGULATED 15B (COR15B); INVOLVED IN: response to cold; LOCATED IN: chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: COR15A (COLD-REGULATED 15A) (TAIR:AT2G42540.2); Has 134 Blast hits to 106 proteins in 35 species: Archae - 0; Bacteria - 18; Metazoa - 4; Fungi - 2; Plants - 102; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT2G42530.1p  transcript_id AT2G42530.1  protein_id AT2G42530.1p  transcript_id AT2G42530.1  
At2g42540	chr2:017711773	0.0	C/17711773-17711930,17711241-17711466	AT2G42540.1  CDS  gene_syn COLD-REGULATED 15A, COR15, COR15A, F14N22.19, F14N22_19  gene COR15A  function A cold-regulated gene whose product is targeted to the chloroplast and constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast stroma|GO:0009570||IDA  go_process response to osmotic stress|GO:0006970|11779861|IGI  go_process response to cold|GO:0009409|16258011|IEP  go_process response to water deprivation|GO:0009414|8193295|IEP  go_process cold acclimation|GO:0009631|1567390|IDA  go_process response to salt stress|GO:0009651|11351099|IEP  go_process response to abscisic acid stimulus|GO:0009737|8193295|IEP  go_process red or far red light signaling pathway|GO:0010017|17965713|IEP  go_process response to freezing|GO:0050826|1567390|IDA  go_function molecular_function|GO:0003674||ND  product COR15A (COLD-REGULATED 15A)  note COLD-REGULATED 15A (COR15A); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 8 processes; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: COR15B (COLD REGULATED 15B) (TAIR:AT2G42530.1); Has 132 Blast hits to 96 proteins in 31 species: Archae - 0; Bacteria - 8; Metazoa - 3; Fungi - 7; Plants - 105; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G42540.1p  transcript_id AT2G42540.1  protein_id AT2G42540.1p  transcript_id AT2G42540.1  
At2g42540	chr2:017711773	0.0	C/17711773-17711966,17711241-17711466	AT2G42540.2  CDS  gene_syn COLD-REGULATED 15A, COR15, COR15A, F14N22.19, F14N22_19  gene COR15A  function A cold-regulated gene whose product is targeted to the chloroplast and constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast stroma|GO:0009570||IDA  go_process response to osmotic stress|GO:0006970|11779861|IGI  go_process response to cold|GO:0009409|16258011|IEP  go_process response to water deprivation|GO:0009414|8193295|IEP  go_process cold acclimation|GO:0009631|1567390|IDA  go_process response to salt stress|GO:0009651|11351099|IEP  go_process response to abscisic acid stimulus|GO:0009737|8193295|IEP  go_process red or far red light signaling pathway|GO:0010017|17965713|IEP  go_process response to freezing|GO:0050826|1567390|IDA  go_function molecular_function|GO:0003674||ND  product COR15A (COLD-REGULATED 15A)  note COLD-REGULATED 15A (COR15A); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 8 processes; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: COR15B (COLD REGULATED 15B) (TAIR:AT2G42530.1); Has 134 Blast hits to 102 proteins in 31 species: Archae - 0; Bacteria - 8; Metazoa - 3; Fungi - 7; Plants - 107; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G42540.2p  transcript_id AT2G42540.2  protein_id AT2G42540.2p  transcript_id AT2G42540.2  
At2g42550	chr2:017713196	0.0	W/17713196-17714230	AT2G42550.1  CDS  gene_syn F14N22.18, F14N22_18  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G27510.1); Has 74558 Blast hits to 73800 proteins in 1760 species: Archae - 70; Bacteria - 6408; Metazoa - 33265; Fungi - 7248; Plants - 12168; Viruses - 342; Other Eukaryotes - 15057 (source: NCBI BLink).  protein_id AT2G42550.1p  transcript_id AT2G42550.1  protein_id AT2G42550.1p  transcript_id AT2G42550.1  
At2g42560	chr2:017715355	0.0	C/17715355-17716821,17714813-17715253	AT2G42560.1  CDS  gene_syn F14N22.17, F14N22_17  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||ISS  go_function molecular_function|GO:0003674||ND  product late embryogenesis abundant domain-containing protein / LEA domain-containing protein  note late embryogenesis abundant domain-containing protein / LEA domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: seed; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein (InterPro:IPR004238); BEST Arabidopsis thaliana protein match is: ATECP63 (EMBRYONIC CELL PROTEIN 63) (TAIR:AT2G36640.1); Has 12374 Blast hits to 7501 proteins in 1066 species: Archae - 63; Bacteria - 4676; Metazoa - 2087; Fungi - 744; Plants - 1442; Viruses - 129; Other Eukaryotes - 3233 (source: NCBI BLink).  protein_id AT2G42560.1p  transcript_id AT2G42560.1  protein_id AT2G42560.1p  transcript_id AT2G42560.1  
At2g42570	chr2:017719620	0.0	C/17719620-17719921,17718871-17719042,17718150-17718325,17717907-17718065,17717498-17717792	AT2G42570.1  CDS  gene_syn F14N22.16, F14N22_16  go_component vacuole|GO:0005773|14760709|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31110.2); Has 707 Blast hits to 696 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 707; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G42570.1p  transcript_id AT2G42570.1  protein_id AT2G42570.1p  transcript_id AT2G42570.1  
At2g42580	chr2:017728855	0.0	W/17728855-17729753,17729841-17730036,17730117-17730301,17730390-17730723,17730805-17731006,17731090-17731196,17731309-17731461	AT2G42580.1  CDS  gene_syn F14N22.15, F14N22_15, TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3, TTL3, VHI-INTERACTING TPR CONTAINING PROTEIN, VIT  gene TTL3  function Encodes a member of the TTL family and contains a thioredoxin like domain and three tandom TPRs. Interacts physically with BRL2/VH1 and appears to play a role in brassiosteroid and auxin signaling.  go_function binding|GO:0005488||IEA  go_process auxin mediated signaling pathway|GO:0009734|19000166|IMP  go_process brassinosteroid mediated signaling|GO:0009742|19000166|IMP  go_process leaf vascular tissue pattern formation|GO:0010305|19000166|IMP  go_function protein binding|GO:0005515||ISS  product TTL3 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3); binding / protein binding  note TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3 (TTL3); FUNCTIONS IN: protein binding, binding; INVOLVED IN: brassinosteroid mediated signaling, auxin mediated signaling pathway, leaf vascular tissue pattern formation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Tetratricopeptide TPR-1 (InterPro:IPR001440), Thioredoxin fold (InterPro:IPR012335), Tetratricopeptide-like helical (InterPro:IPR011990), Thioredoxin domain (InterPro:IPR013766), Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide region (InterPro:IPR013026), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: TTL4 (Tetratricopetide-repeat Thioredoxin-Like 4); binding (TAIR:AT3G58620.1); Has 17269 Blast hits to 8601 proteins in 686 species: Archae - 386; Bacteria - 2603; Metazoa - 5245; Fungi - 1601; Plants - 1254; Viruses - 6; Other Eukaryotes - 6174 (source: NCBI BLink).  protein_id AT2G42580.1p  transcript_id AT2G42580.1  protein_id AT2G42580.1p  transcript_id AT2G42580.1  
At2g42590	chr2:017733703	0.0	C/17733703-17733775,17733169-17733475,17733004-17733091,17732797-17732906,17732555-17732703,17732164-17732267	AT2G42590.3  CDS  gene_syn F14N22.14, F14N22_14, GENERAL REGULATORY FACTOR 9, GF14 MU, GRF9  gene GRF9  function 14-3-3 gene. Binds calcium and displays induced structural changes.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component chloroplast stroma|GO:0009570|9276953|IDA  go_component chloroplast stroma|GO:0009570|9276953|IPI  go_function calcium ion binding|GO:0005509|16407442|IDA  go_function protein binding|GO:0005515||NAS  go_function protein phosphorylated amino acid binding|GO:0045309|10631267|TAS  product GRF9 (GENERAL REGULATORY FACTOR 9); calcium ion binding / protein binding / protein phosphorylated amino acid binding  note GENERAL REGULATORY FACTOR 9 (GRF9); FUNCTIONS IN: protein phosphorylated amino acid binding, protein binding, calcium ion binding; LOCATED IN: nucleus, chloroplast stroma, plasma membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: GRF12 (GENERAL REGULATORY FACTOR 12); protein binding / protein phosphorylated amino acid binding (TAIR:AT1G26480.1); Has 2100 Blast hits to 2092 proteins in 293 species: Archae - 0; Bacteria - 0; Metazoa - 1028; Fungi - 228; Plants - 540; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink).  protein_id AT2G42590.3p  transcript_id AT2G42590.3  protein_id AT2G42590.3p  transcript_id AT2G42590.3  
At2g42590	chr2:017733703	0.0	C/17733703-17733775,17733169-17733475,17733004-17733091,17732797-17732906,17732555-17732703,17732206-17732264,17732118-17732120	AT2G42590.2  CDS  gene_syn F14N22.14, F14N22_14, GENERAL REGULATORY FACTOR 9, GF14 MU, GRF9  gene GRF9  function 14-3-3 gene. Binds calcium and displays induced structural changes.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component chloroplast stroma|GO:0009570|9276953|IDA  go_component chloroplast stroma|GO:0009570|9276953|IPI  go_function calcium ion binding|GO:0005509|16407442|IDA  go_function protein binding|GO:0005515||NAS  go_function protein phosphorylated amino acid binding|GO:0045309|10631267|TAS  product GRF9 (GENERAL REGULATORY FACTOR 9); calcium ion binding / protein binding / protein phosphorylated amino acid binding  note GENERAL REGULATORY FACTOR 9 (GRF9); FUNCTIONS IN: protein phosphorylated amino acid binding, protein binding, calcium ion binding; LOCATED IN: nucleus, chloroplast stroma, plasma membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: GRF12 (GENERAL REGULATORY FACTOR 12); protein binding / protein phosphorylated amino acid binding (TAIR:AT1G26480.1); Has 2100 Blast hits to 2092 proteins in 293 species: Archae - 0; Bacteria - 0; Metazoa - 1028; Fungi - 228; Plants - 540; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink).  protein_id AT2G42590.2p  transcript_id AT2G42590.2  protein_id AT2G42590.2p  transcript_id AT2G42590.2  
At2g42590	chr2:017733703	0.0	C/17733703-17733775,17733169-17733475,17733004-17733091,17732797-17732906,17732555-17732703,17732206-17732267,17732118-17732120	AT2G42590.1  CDS  gene_syn F14N22.14, F14N22_14, GENERAL REGULATORY FACTOR 9, GF14 MU, GRF9  gene GRF9  function 14-3-3 gene. Binds calcium and displays induced structural changes.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component chloroplast stroma|GO:0009570|9276953|IDA  go_component chloroplast stroma|GO:0009570|9276953|IPI  go_function calcium ion binding|GO:0005509|16407442|IDA  go_function protein binding|GO:0005515||NAS  go_function protein phosphorylated amino acid binding|GO:0045309|10631267|TAS  product GRF9 (GENERAL REGULATORY FACTOR 9); calcium ion binding / protein binding / protein phosphorylated amino acid binding  note GENERAL REGULATORY FACTOR 9 (GRF9); FUNCTIONS IN: protein phosphorylated amino acid binding, protein binding, calcium ion binding; LOCATED IN: nucleus, chloroplast stroma, plasma membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: GRF12 (GENERAL REGULATORY FACTOR 12); protein binding / protein phosphorylated amino acid binding (TAIR:AT1G26480.1); Has 2100 Blast hits to 2092 proteins in 293 species: Archae - 0; Bacteria - 0; Metazoa - 1028; Fungi - 228; Plants - 540; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink).  protein_id AT2G42590.1p  transcript_id AT2G42590.1  protein_id AT2G42590.1p  transcript_id AT2G42590.1  
At2g42600	chr2:017738512	0.0	C/17738512-17738679,17737786-17738177,17737612-17737696,17737315-17737537,17737131-17737234,17736949-17737033,17736698-17736852,17735418-17736416,17734941-17735327,17734541-17734834	AT2G42600.1  CDS  gene_syn ATPPC2, F14N22.13, F14N22_13, PHOSPHOENOLPYRUVATE CARBOXYLASE 2  gene ATPPC2  function Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function catalytic activity|GO:0003824||IEA  go_function phosphoenolpyruvate carboxylase activity|GO:0008964||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_process tricarboxylic acid cycle|GO:0006099||ISS  go_process response to water deprivation|GO:0009414|16283377|IEP  go_process response to salt stress|GO:0009651|16283377|IEP  go_function phosphoenolpyruvate carboxylase activity|GO:0008964||ISS  product ATPPC2 (PHOSPHOENOLPYRUVATE CARBOXYLASE 2); catalytic/ phosphoenolpyruvate carboxylase  note PHOSPHOENOLPYRUVATE CARBOXYLASE 2 (ATPPC2); FUNCTIONS IN: phosphoenolpyruvate carboxylase activity, catalytic activity; INVOLVED IN: response to salt stress, response to water deprivation, tricarboxylic acid cycle; LOCATED IN: cytosol, apoplast, chloroplast, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Phosphoenolpyruvate carboxylase, active site (InterPro:IPR018129), Phosphoenolpyruvate carboxylase (InterPro:IPR001449); BEST Arabidopsis thaliana protein match is: ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1); catalytic/ phosphoenolpyruvate carboxylase (TAIR:AT1G53310.3); Has 5034 Blast hits to 5002 proteins in 1303 species: Archae - 9; Bacteria - 1556; Metazoa - 2; Fungi - 0; Plants - 1251; Viruses - 0; Other Eukaryotes - 2216 (source: NCBI BLink).  protein_id AT2G42600.1p  transcript_id AT2G42600.1  protein_id AT2G42600.1p  transcript_id AT2G42600.1  
At2g42600	chr2:017738512	0.0	C/17738512-17738679,17737786-17738177,17737612-17737696,17737315-17737537,17737131-17737234,17736949-17737033,17736698-17736852,17735418-17736416,17734941-17735327,17734541-17734834	AT2G42600.2  CDS  gene_syn ATPPC2, F14N22.13, F14N22_13, PHOSPHOENOLPYRUVATE CARBOXYLASE 2  gene ATPPC2  function Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function catalytic activity|GO:0003824||IEA  go_function phosphoenolpyruvate carboxylase activity|GO:0008964||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_process tricarboxylic acid cycle|GO:0006099||ISS  go_process response to water deprivation|GO:0009414|16283377|IEP  go_process response to salt stress|GO:0009651|16283377|IEP  go_function phosphoenolpyruvate carboxylase activity|GO:0008964||ISS  product ATPPC2 (PHOSPHOENOLPYRUVATE CARBOXYLASE 2); catalytic/ phosphoenolpyruvate carboxylase  note PHOSPHOENOLPYRUVATE CARBOXYLASE 2 (ATPPC2); FUNCTIONS IN: phosphoenolpyruvate carboxylase activity, catalytic activity; INVOLVED IN: response to salt stress, response to water deprivation, tricarboxylic acid cycle; LOCATED IN: cytosol, apoplast, chloroplast, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Phosphoenolpyruvate carboxylase, active site (InterPro:IPR018129), Phosphoenolpyruvate carboxylase (InterPro:IPR001449); BEST Arabidopsis thaliana protein match is: ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1); catalytic/ phosphoenolpyruvate carboxylase (TAIR:AT1G53310.3); Has 5034 Blast hits to 5002 proteins in 1303 species: Archae - 9; Bacteria - 1556; Metazoa - 2; Fungi - 0; Plants - 1251; Viruses - 0; Other Eukaryotes - 2216 (source: NCBI BLink).  protein_id AT2G42600.2p  transcript_id AT2G42600.2  protein_id AT2G42600.2p  transcript_id AT2G42600.2  
At2g42610	chr2:017748005	0.0	W/17748005-17748538	AT2G42610.1  CDS  gene_syn LIGHT SENSITIVE HYPOCOTYLS 10, LSH10  gene LSH10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)  note LIGHT SENSITIVE HYPOCOTYLS 10 (LSH10); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: LSH6 (LIGHT SENSITIVE HYPOCOTYLS 6) (TAIR:AT1G07090.1); Has 183 Blast hits to 183 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G42610.1p  transcript_id AT2G42610.1  protein_id AT2G42610.1p  transcript_id AT2G42610.1  
At2g42610	chr2:017748005	0.0	W/17748005-17748538	AT2G42610.2  CDS  gene_syn LIGHT SENSITIVE HYPOCOTYLS 10, LSH10  gene LSH10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)  note LIGHT SENSITIVE HYPOCOTYLS 10 (LSH10); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: LSH6 (LIGHT SENSITIVE HYPOCOTYLS 6) (TAIR:AT1G07090.1); Has 183 Blast hits to 183 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G42610.2p  transcript_id AT2G42610.2  protein_id AT2G42610.2p  transcript_id AT2G42610.2  
At2g42620	chr2:017756170	0.0	W/17756170-17758251	AT2G42620.1  CDS  gene_syn F14N22.11, F14N22_11, MAX2, MORE AXILLARY BRANCHES 2, ORE9, ORESARA 9, PLEIOTROHIC PHOTOSIGNALING, PP2  gene MAX2  function The mutations at MAX2 cause increased hypocotyl and petiole elongation in light-grown seedlings. Positional cloning identifies MAX2 as a member of the F-box leucine-rich repeat family of proteins. MAX2 is identical to ORE9, a proposed regulator of leaf senescence. Involved in positive regulation of light responses.  go_component ubiquitin ligase complex|GO:0000151|11487692|IPI  go_component nucleus|GO:0005634|17346265|IDA  go_component SCF ubiquitin ligase complex|GO:0019005|11874909|ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11487692|TAS  go_process aging|GO:0007568|11487692|IMP  go_process response to water deprivation|GO:0009414|15894742|IGI  go_process response to light stimulus|GO:0009416|17951458|IMP  go_process auxin polar transport|GO:0009926|16546078|IMP  go_process regulation of meristem organization|GO:0009934|11874909|IMP  go_process shoot morphogenesis|GO:0010016|17346265|IMP  go_process protein ubiquitination|GO:0016567|11874909|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product MAX2 (MORE AXILLARY BRANCHES 2); ubiquitin-protein ligase  note MORE AXILLARY BRANCHES 2 (MAX2); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: in 8 processes; LOCATED IN: SCF ubiquitin ligase complex, ubiquitin ligase complex, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (FBL4) (TAIR:AT4G15475.1); Has 724 Blast hits to 505 proteins in 71 species: Archae - 0; Bacteria - 2; Metazoa - 336; Fungi - 11; Plants - 323; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT2G42620.1p  transcript_id AT2G42620.1  protein_id AT2G42620.1p  transcript_id AT2G42620.1  
At2g42640	chr2:017763641	0.0	C/17763641-17763708,17763389-17763417,17762934-17763292,17762608-17762802,17762189-17762362,17761809-17762080,17761599-17761679,17761068-17761160,17760638-17760716,17760008-17760272,17759710-17759833,17759614-17759633,17759344-17759494,17758866-17759151,17758709-17758781,17758532-17758614	AT2G42640.1  CDS  gene_syn F14N22.9, F14N22_9  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  product ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase, active site (InterPro:IPR008266), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G58640.2); Has 91404 Blast hits to 89700 proteins in 3518 species: Archae - 65; Bacteria - 7757; Metazoa - 41116; Fungi - 7323; Plants - 18856; Viruses - 474; Other Eukaryotes - 15813 (source: NCBI BLink).  protein_id AT2G42640.1p  transcript_id AT2G42640.1  protein_id AT2G42640.1p  transcript_id AT2G42640.1  
At2g42650	chr2:017765530	0.0	W/17765530-17766648	AT2G42650.1  CDS  gene_syn F14N22.8, F14N22_8  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  product 60S ribosomal protein-related  note 60S ribosomal protein-related; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein-related (TAIR:AT3G58660.1); Has 881 Blast hits to 879 proteins in 227 species: Archae - 27; Bacteria - 0; Metazoa - 376; Fungi - 210; Plants - 147; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).  protein_id AT2G42650.1p  transcript_id AT2G42650.1  protein_id AT2G42650.1p  transcript_id AT2G42650.1  
At2g42660	chr2:017768036	0.0	C/17768036-17768258,17767874-17767950,17767754-17767793,17767562-17767676,17767339-17767468,17767065-17767247	AT2G42660.1  CDS  gene_syn F14N22.7, F14N22_7  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT2G38300.1); Has 870 Blast hits to 868 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 865; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT2G42660.1p  transcript_id AT2G42660.1  protein_id AT2G42660.1p  transcript_id AT2G42660.1  
At2g42670	chr2:017773598	0.0	C/17773598-17773700,17773148-17773293,17772499-17772652,17772210-17772413,17772004-17772122	AT2G42670.1  CDS  gene_syn F14N22.6, F14N22_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1637 (InterPro:IPR012864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58670.2); Has 238 Blast hits to 238 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 84; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT2G42670.1p  transcript_id AT2G42670.1  protein_id AT2G42670.1p  transcript_id AT2G42670.1  
At2g42670	chr2:017773598	0.0	C/17773598-17773700,17773148-17773293,17772499-17772652,17772210-17772416,17772004-17772122	AT2G42670.2  CDS  gene_syn F14N22.6, F14N22_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1637 (InterPro:IPR012864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58670.2); Has 240 Blast hits to 240 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 84; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT2G42670.2p  transcript_id AT2G42670.2  protein_id AT2G42670.2p  transcript_id AT2G42670.2  
At2g42680	chr2:017774972	0.0	W/17774972-17775113,17775469-17775552,17775826-17775908,17775997-17776116	AT2G42680.1  CDS  gene_syn ARABIDOPSIS THALIANA MULTIPROTEIN BRIDGING FACTOR 1A, ATMBF1A, F14N22.5, F14N22_5, MBF1A, MULTIPROTEIN BRIDGING FACTOR 1A  gene MBF1A  function One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator. May serve as a bridging factor between a bZIP factor and TBP. Its expression is developmentally regulated.  go_component nucleolus|GO:0005730|16283071|IDA  go_process transcription|GO:0006350||ISS  go_process response to ethylene stimulus|GO:0009723||ISS  go_process positive regulation of transcription|GO:0045941|14988493|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription coactivator activity|GO:0003713|14988493|IGI  go_function transcription coactivator activity|GO:0003713||ISS  product MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A); DNA binding / transcription coactivator  note MULTIPROTEIN BRIDGING FACTOR 1A (MBF1A); FUNCTIONS IN: transcription coactivator activity, DNA binding; INVOLVED IN: response to ethylene stimulus, positive regulation of transcription, transcription; LOCATED IN: nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lambda repressor-like, DNA-binding (InterPro:IPR010982), Multiprotein bridging factor 1, N-terminal (InterPro:IPR013729), Helix-turn-helix type 3 (InterPro:IPR001387); BEST Arabidopsis thaliana protein match is: MBF1B (MULTIPROTEIN BRIDGING FACTOR 1B); DNA binding / transcription coactivator (TAIR:AT3G58680.1); Has 503 Blast hits to 503 proteins in 178 species: Archae - 19; Bacteria - 0; Metazoa - 166; Fungi - 103; Plants - 84; Viruses - 2; Other Eukaryotes - 129 (source: NCBI BLink).  protein_id AT2G42680.1p  transcript_id AT2G42680.1  protein_id AT2G42680.1p  transcript_id AT2G42680.1  
At2g42690	chr2:017776666	0.0	C/17776666-17777682,17776356-17776577	AT2G42690.1  CDS  gene_syn F14N22.2  go_component chloroplast|GO:0009507|15028209|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product lipase, putative  note lipase, putative; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: triacylglycerol lipase (TAIR:AT2G31100.1); Has 475 Blast hits to 469 proteins in 78 species: Archae - 0; Bacteria - 17; Metazoa - 4; Fungi - 115; Plants - 230; Viruses - 1; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT2G42690.1p  transcript_id AT2G42690.1  protein_id AT2G42690.1p  transcript_id AT2G42690.1  
At2g42700	chr2:017778464	0.0	W/17778464-17778511,17778726-17778869,17779083-17779232,17779525-17779968,17780136-17781668,17781750-17781818,17781906-17782034	AT2G42700.1  CDS  gene_syn F14N22.4  go_process vesicle docking during exocytosis|GO:0006904||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport, vesicle docking during exocytosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); Has 95 Blast hits to 92 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 70; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT2G42700.1p  transcript_id AT2G42700.1  protein_id AT2G42700.1p  transcript_id AT2G42700.1  
At2g42710	chr2:017782352	0.0	W/17782352-17782945,17783342-17783419,17783560-17783601,17783689-17783791,17783956-17784020,17784114-17784158,17784261-17784368,17784458-17784545,17784624-17784670,17784753-17784830	AT2G42710.1  CDS  gene_syn F14N22.3  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_component large ribosomal subunit|GO:0015934||IEA  go_process RNA processing|GO:0006396||IEA  go_process translation|GO:0006412||IEA  go_function RNA binding|GO:0003723||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component large ribosomal subunit|GO:0015934||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L1 family protein  note ribosomal protein L1 family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, bacterial-type (InterPro:IPR005878), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro:IPR016094); BEST Arabidopsis thaliana protein match is: ribosomal protein L1 family protein (TAIR:AT3G63490.1); Has 6482 Blast hits to 6456 proteins in 1596 species: Archae - 113; Bacteria - 2895; Metazoa - 328; Fungi - 176; Plants - 121; Viruses - 2; Other Eukaryotes - 2847 (source: NCBI BLink).  protein_id AT2G42710.1p  transcript_id AT2G42710.1  protein_id AT2G42710.1p  transcript_id AT2G42710.1  
At2g42720	chr2:017785653	0.0	W/17785653-17786552,17786694-17786834,17786921-17787211	AT2G42720.1  CDS  gene_syn F7D19.28, F7D19_28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G42730.1); Has 1280 Blast hits to 1250 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1278; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G42720.1p  transcript_id AT2G42720.1  protein_id AT2G42720.1p  transcript_id AT2G42720.1  
At2g42730	chr2:017790301	0.0	C/17790301-17791218,17790006-17790146,17789644-17789920,17787454-17788331	AT2G42730.1  CDS  gene_syn F7D19.27, F7D19_27  go_component nucleus|GO:0005634||IEA  go_process transcription|GO:0006350||IEA  go_function zinc ion binding|GO:0008270||IEA  product F-box family protein  note F-box family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Transcription elongation factor S-II, central region (InterPro:IPR003618), Transcription elongation factor S-IIM (InterPro:IPR017890), TFIIS N-terminal (InterPro:IPR017923), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G42720.1); Has 1821 Blast hits to 1767 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 355; Fungi - 98; Plants - 1345; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT2G42730.1p  transcript_id AT2G42730.1  protein_id AT2G42730.1p  transcript_id AT2G42730.1  
At2g42740	chr2:017791794	0.0	W/17791794-17791796,17791875-17791982,17792069-17792111,17792458-17792653,17792748-17792946	AT2G42740.1  CDS  gene_syn F7D19.26, F7D19_26, RPL16A  gene RPL16A  function encodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root stele and anthers and expression is induced by auxin treatment.  go_component nucleolus|GO:0005730|15496452|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_component cytosolic large ribosomal subunit|GO:0022625|7655508|TAS  go_component cytosolic large ribosomal subunit|GO:0022625||ISS  go_process translation|GO:0006412|7655508|TAS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product RPL16A; structural constituent of ribosome  note RPL16A; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, nucleolus, chloroplast, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L5 (InterPro:IPR002132); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L11 (RPL11D) (TAIR:AT5G45775.2); Has 5258 Blast hits to 5258 proteins in 1656 species: Archae - 218; Bacteria - 2820; Metazoa - 209; Fungi - 107; Plants - 188; Viruses - 0; Other Eukaryotes - 1716 (source: NCBI BLink).  protein_id AT2G42740.1p  transcript_id AT2G42740.1  protein_id AT2G42740.1p  transcript_id AT2G42740.1  
At2g42750	chr2:017793404	0.0	W/17793404-17793652,17793900-17794028,17794122-17794251,17794329-17794449,17794548-17794629,17794766-17794819,17794971-17795009,17795097-17795196,17795289-17795419	AT2G42750.1  CDS  gene_syn F7D19.25, F7D19_25  go_component chloroplast|GO:0009507|15028209|IDA  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), 4Fe-4S ferredoxin, iron-sulpur binding domain (InterPro:IPR017896), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT5G23240.1); Has 11990 Blast hits to 11989 proteins in 1806 species: Archae - 113; Bacteria - 4757; Metazoa - 2272; Fungi - 965; Plants - 810; Viruses - 15; Other Eukaryotes - 3058 (source: NCBI BLink).  protein_id AT2G42750.1p  transcript_id AT2G42750.1  protein_id AT2G42750.1p  transcript_id AT2G42750.1  
At2g42760	chr2:017796382	0.0	C/17796382-17797185	AT2G42760.1  CDS  gene_syn F7D19.24, F7D19_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 103 Blast hits to 97 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 7; Plants - 42; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT2G42760.1p  transcript_id AT2G42760.1  protein_id AT2G42760.1p  transcript_id AT2G42760.1  
At2g42770	chr2:017799646	0.0	C/17799646-17799927,17799166-17799321,17798949-17799081,17798827-17798866,17798635-17798722	AT2G42770.1  CDS  gene_syn F7D19.23, F7D19_23  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component peroxisomal membrane|GO:0005778||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product peroxisomal membrane 22 kDa family protein  note peroxisomal membrane 22 kDa family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: peroxisomal membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mpv17/PMP22 (InterPro:IPR007248); BEST Arabidopsis thaliana protein match is: peroxisomal membrane 22 kDa family protein (TAIR:AT5G43140.1); Has 815 Blast hits to 815 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 408; Fungi - 214; Plants - 126; Viruses - 11; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT2G42770.1p  transcript_id AT2G42770.1  protein_id AT2G42770.1p  transcript_id AT2G42770.1  
At2g42780	chr2:017801037	0.0	W/17801037-17801213,17801318-17801458,17801537-17801615,17801740-17801802,17801950-17802028,17802125-17802181,17802272-17802391,17802481-17802646	AT2G42780.1  CDS  gene_syn F7D19.22, F7D19_22  go_component nucleus|GO:0005634||IEA  go_component integral to membrane|GO:0016021||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 143 Blast hits to 142 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 96; Fungi - 19; Plants - 18; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT2G42780.1p  transcript_id AT2G42780.1  protein_id AT2G42780.1p  transcript_id AT2G42780.1  
At2g42790	chr2:017805761	0.0	C/17805761-17805991,17805491-17805671,17805303-17805388,17804991-17805095,17804812-17804874,17804582-17804691,17804311-17804430,17804164-17804239,17803996-17804069,17803786-17803906,17803573-17803670,17803368-17803491,17803132-17803272	AT2G42790.1  CDS  gene_syn CSY3, F7D19.21, F7D19_21, citrate synthase 3  gene CSY3  function Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development.  go_component peroxisome|GO:0005777|17951448|IDA  go_component peroxisome|GO:0005777|15923350|IDA  go_process tricarboxylic acid cycle|GO:0006099||ISS  go_process fatty acid beta-oxidation|GO:0006635|15923350|IGI  go_function citrate (SI)-synthase activity|GO:0004108|15923350|IGI  go_function citrate (SI)-synthase activity|GO:0004108||ISS  product CSY3 (citrate synthase 3); citrate (SI)-synthase  note citrate synthase 3 (CSY3); FUNCTIONS IN: citrate (SI)-synthase activity; INVOLVED IN: fatty acid beta-oxidation, tricarboxylic acid cycle; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Citrate synthase, type II (InterPro:IPR010953), Citrate synthase-like, large alpha subdomain (InterPro:IPR016142), Citrate synthase-like, core (InterPro:IPR016141), Citrate synthase-like (InterPro:IPR002020); BEST Arabidopsis thaliana protein match is: CSY2 (citrate synthase 2); citrate (SI)-synthase (TAIR:AT3G58750.1); Has 9722 Blast hits to 9720 proteins in 2021 species: Archae - 111; Bacteria - 5053; Metazoa - 330; Fungi - 217; Plants - 98; Viruses - 0; Other Eukaryotes - 3913 (source: NCBI BLink).  protein_id AT2G42790.1p  transcript_id AT2G42790.1  protein_id AT2G42790.1p  transcript_id AT2G42790.1  
At2g42800	chr2:017808157	0.0	C/17808157-17809545	AT2G42800.1  CDS  gene_syn AtRLP29, F7D19.20, F7D19_20, Receptor Like Protein 29  gene AtRLP29  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product AtRLP29 (Receptor Like Protein 29); protein binding  note Receptor Like Protein 29 (AtRLP29); FUNCTIONS IN: protein binding; LOCATED IN: anchored to membrane, plant-type cell wall; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: TMM (TOO MANY MOUTHS); protein binding / receptor (TAIR:AT1G80080.1); Has 61710 Blast hits to 21403 proteins in 794 species: Archae - 30; Bacteria - 3090; Metazoa - 21059; Fungi - 654; Plants - 33045; Viruses - 0; Other Eukaryotes - 3832 (source: NCBI BLink).  protein_id AT2G42800.1p  transcript_id AT2G42800.1  protein_id AT2G42800.1p  transcript_id AT2G42800.1  
At2g42810	chr2:017815821	0.0	C/17815821-17815896,17815543-17815712,17815396-17815467,17814889-17815039,17814110-17814218,17813913-17814030,17813492-17813639,17813085-17813333,17812869-17812994,17812674-17812774,17812514-17812588,17812336-17812395	AT2G42810.1  CDS  gene_syn F7D19.19, F7D19_19, PAPP5, PP5, PP5.2, PROTEIN PHOSPHATASE 5, PROTEIN PHOSPHATASE 5.2  gene PP5.2  function Encodes a phytochrome-specific type 5 serine/threonine protein phosphatase. It dephosphorylates active Pfr-phytochromes. Controls light signal flux by enhancing phytochrome stability and affinity for a signal transducer. The gene is alternately spliced. This variant is an integral membrane protein localized to the ER and nuclear envelope.  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component nucleus|GO:0005634|11703093|ISS  go_component nucleus|GO:0005634|12972652|IDA  go_component nucleus|GO:0005634|15707897|IDA  go_component nuclear envelope|GO:0005635|12972652|IDA  go_component cytoplasm|GO:0005737|12972652|IDA  go_component cytoplasm|GO:0005737|15707897|IDA  go_component integral to endoplasmic reticulum membrane|GO:0030176|12972652|IDA  go_process nucleocytoplasmic transport|GO:0006913|11716463|ISS  go_process red or far red light signaling pathway|GO:0010017|15707897|IMP  go_function phosphoprotein phosphatase activity|GO:0004721|15707897|IDA  go_function protein serine/threonine phosphatase activity|GO:0004722|12068129|ISS  go_function protein binding|GO:0005515|15707897|IPI  product PP5.2 (PROTEIN PHOSPHATASE 5.2); phosphoprotein phosphatase/ protein binding / protein serine/threonine phosphatase  note PROTEIN PHOSPHATASE 5 (PP5); FUNCTIONS IN: protein binding, protein serine/threonine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: response to cadmium ion, red or far red light signaling pathway, nucleocytoplasmic transport; LOCATED IN: integral to endoplasmic reticulum membrane, nuclear envelope, nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Metallophosphoesterase (InterPro:IPR004843), Tetratricopeptide-like helical (InterPro:IPR011990), Protein phosphatase 5 (InterPro:IPR011236), Serine/threonine phosphatase, PPP5 (InterPro:IPR013235), Tetratricopeptide region (InterPro:IPR013026), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: TOPP8; protein serine/threonine phosphatase (TAIR:AT5G27840.2); Has 19180 Blast hits to 13762 proteins in 735 species: Archae - 759; Bacteria - 4447; Metazoa - 5129; Fungi - 1829; Plants - 1641; Viruses - 0; Other Eukaryotes - 5375 (source: NCBI BLink).  protein_id AT2G42810.1p  transcript_id AT2G42810.1  protein_id AT2G42810.1p  transcript_id AT2G42810.1  
At2g42810	chr2:017815821	0.0	C/17815821-17815896,17815543-17815712,17815396-17815467,17814889-17815039,17814558-17814719,17814110-17814218,17813913-17814030,17813492-17813639,17813085-17813333,17812869-17812994,17812674-17812774,17812514-17812588,17812336-17812395	AT2G42810.2  CDS  gene_syn F7D19.19, F7D19_19, PAPP5, PP5, PP5.2, PROTEIN PHOSPHATASE 5, PROTEIN PHOSPHATASE 5.2  gene PP5.2  function Encodes a phytochrome-specific type 5 serine/threonine protein phosphatase. It dephosphorylates active Pfr-phytochromes. Controls light signal flux by enhancing phytochrome stability and affinity for a signal transducer. The gene is alternately spliced. This variant is an integral membrane protein localized to the ER and nuclear envelope.  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component nucleus|GO:0005634|11703093|ISS  go_component nucleus|GO:0005634|12972652|IDA  go_component nucleus|GO:0005634|15707897|IDA  go_component nuclear envelope|GO:0005635|12972652|IDA  go_component cytoplasm|GO:0005737|12972652|IDA  go_component cytoplasm|GO:0005737|15707897|IDA  go_component integral to endoplasmic reticulum membrane|GO:0030176|12972652|IDA  go_process nucleocytoplasmic transport|GO:0006913|11716463|ISS  go_process red or far red light signaling pathway|GO:0010017|15707897|IMP  go_function phosphoprotein phosphatase activity|GO:0004721|15707897|IDA  go_function protein serine/threonine phosphatase activity|GO:0004722|12068129|ISS  go_function protein binding|GO:0005515|15707897|IPI  product PP5.2 (PROTEIN PHOSPHATASE 5.2); phosphoprotein phosphatase/ protein binding / protein serine/threonine phosphatase  note PROTEIN PHOSPHATASE 5.2 (PP5.2); FUNCTIONS IN: protein binding, protein serine/threonine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: response to cadmium ion, red or far red light signaling pathway, nucleocytoplasmic transport; LOCATED IN: integral to endoplasmic reticulum membrane, nuclear envelope, nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Tetratricopeptide TPR-1 (InterPro:IPR001440), Protein phosphatase 5 (InterPro:IPR011236), Tetratricopeptide-like helical (InterPro:IPR011990), Serine/threonine phosphatase, PPP5 (InterPro:IPR013235), Tetratricopeptide region (InterPro:IPR013026), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: TOPP8; protein serine/threonine phosphatase (TAIR:AT5G27840.2); Has 19291 Blast hits to 13674 proteins in 724 species: Archae - 767; Bacteria - 4506; Metazoa - 5127; Fungi - 1841; Plants - 1640; Viruses - 0; Other Eukaryotes - 5410 (source: NCBI BLink).  protein_id AT2G42810.2p  transcript_id AT2G42810.2  protein_id AT2G42810.2p  transcript_id AT2G42810.2  
At2g42820	chr2:017818255	0.0	C/17818255-17818301,17818130-17818156,17817930-17818052,17817586-17817838,17817460-17817486	AT2G42820.1  CDS  gene_syn F7D19.18, F7D19_18, HVA22-LIKE PROTEIN F, HVA22F  gene HVA22F  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product HVA22F (HVA22-LIKE PROTEIN F)  note HVA22-LIKE PROTEIN F (HVA22F); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: TB2/DP1 and HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: ATHVA22A (TAIR:AT1G74520.1); Has 1062 Blast hits to 1061 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 550; Fungi - 144; Plants - 303; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT2G42820.1p  transcript_id AT2G42820.1  protein_id AT2G42820.1p  transcript_id AT2G42820.1  
At2g42830	chr2:017820602	0.0	W/17820602-17820828,17822885-17822966,17823087-17823248,17823337-17823378,17823489-17823530,17823621-17823806	AT2G42830.1  CDS  gene_syn AGAMOUS LIKE 5, AGL5, F7D19.17, F7D19_17, SHATTERPROOF 2, SHP2  gene SHP2  function AGAMOUS [AG]-like MADS box protein (AGL5) involved in fruit development (valve margin and dehiscence zone differentiation). A putative direct target of AG. SHP2 has been shown to be a downstream gene of the complex formed by AG and SEP proteins (SEP4 alone does not form a functional complex with AG).  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process carpel development|GO:0048440|14555696|IMP  go_process ovule development|GO:0048481|14555696|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function protein binding|GO:0005515|14555696|IPI  go_function protein binding|GO:0005515|7647563|ISS  product SHP2 (SHATTERPROOF 2); protein binding / transcription factor  note SHATTERPROOF 2 (SHP2); FUNCTIONS IN: protein binding, transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, ovule development, carpel development; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: SHP1 (SHATTERPROOF 1); DNA binding / protein binding / transcription factor (TAIR:AT3G58780.1); Has 5214 Blast hits to 5210 proteins in 689 species: Archae - 0; Bacteria - 3; Metazoa - 565; Fungi - 207; Plants - 4381; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT2G42830.1p  transcript_id AT2G42830.1  protein_id AT2G42830.1p  transcript_id AT2G42830.1  
At2g42830	chr2:017820602	0.0	W/17820602-17820828,17822885-17822966,17823087-17823248,17823337-17823384,17823489-17823530,17823621-17823806	AT2G42830.2  CDS  gene_syn AGAMOUS LIKE 5, AGL5, F7D19.17, F7D19_17, SHATTERPROOF 2, SHP2  gene SHP2  function AGAMOUS [AG]-like MADS box protein (AGL5) involved in fruit development (valve margin and dehiscence zone differentiation). A putative direct target of AG. SHP2 has been shown to be a downstream gene of the complex formed by AG and SEP proteins (SEP4 alone does not form a functional complex with AG).  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process carpel development|GO:0048440|14555696|IMP  go_process ovule development|GO:0048481|14555696|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function protein binding|GO:0005515|14555696|IPI  go_function protein binding|GO:0005515|7647563|ISS  product SHP2 (SHATTERPROOF 2); protein binding / transcription factor  note SHATTERPROOF 2 (SHP2); FUNCTIONS IN: protein binding, transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, ovule development, carpel development; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: SHP1 (SHATTERPROOF 1); DNA binding / protein binding / transcription factor (TAIR:AT3G58780.1); Has 5209 Blast hits to 5205 proteins in 689 species: Archae - 0; Bacteria - 3; Metazoa - 565; Fungi - 203; Plants - 4378; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT2G42830.2p  transcript_id AT2G42830.2  protein_id AT2G42830.2p  transcript_id AT2G42830.2  
At2g42835	chr2:017823265	0.0	C/17823265-17824842	AT2G42835.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G42830  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G42835.1  
At2g42840	chr2:017827300	0.0	C/17827300-17827426,17826765-17827215,17826327-17826669	AT2G42840.1  CDS  gene_syn F7D19.16, F7D19_16, PDF1, PROTODERMAL FACTOR 1  gene PDF1  function Encodes a putative extracellular proline-rich protein is exclusively expressed in the L1 layer of vegetative, inflorescence and floral meristems and the protoderm of organ primordia.  go_component extracellular region|GO:0005576|10483121|TAS  product PDF1 (PROTODERMAL FACTOR 1)  note PROTODERMAL FACTOR 1 (PDF1); LOCATED IN: extracellular region; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; Has 65132 Blast hits to 29965 proteins in 1274 species: Archae - 149; Bacteria - 9495; Metazoa - 25543; Fungi - 9346; Plants - 9124; Viruses - 2263; Other Eukaryotes - 9212 (source: NCBI BLink).  protein_id AT2G42840.1p  transcript_id AT2G42840.1  protein_id AT2G42840.1p  transcript_id AT2G42840.1  
At2g42850	chr2:017831662	0.0	W/17831662-17832634,17832722-17832909,17833013-17833309	AT2G42850.1  CDS  gene_syn CYP718, F7D19.15, F7D19_15  gene CYP718  function member of CYP718  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process biological_process|GO:0008150||ND  go_function oxygen binding|GO:0019825||ISS  product CYP718; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP718; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP716A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT5G36110.1); Has 24467 Blast hits to 24424 proteins in 1343 species: Archae - 42; Bacteria - 4131; Metazoa - 9821; Fungi - 3985; Plants - 4920; Viruses - 3; Other Eukaryotes - 1565 (source: NCBI BLink).  protein_id AT2G42850.1p  transcript_id AT2G42850.1  protein_id AT2G42850.1p  transcript_id AT2G42850.1  
At2g42860	chr2:017833859	0.0	W/17833859-17834437,17834552-17834647	AT2G42860.1  CDS  gene_syn F7D19.14, F7D19_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 417 Blast hits to 300 proteins in 82 species: Archae - 0; Bacteria - 26; Metazoa - 110; Fungi - 82; Plants - 12; Viruses - 4; Other Eukaryotes - 183 (source: NCBI BLink).  protein_id AT2G42860.1p  transcript_id AT2G42860.1  protein_id AT2G42860.1p  transcript_id AT2G42860.1  
At2g42870	chr2:017836831	0.0	C/17836831-17837187	AT2G42870.1  CDS  gene_syn F7D19.13, F7D19_13, HELIX-LOOP-HELIX 1, HLH1, PAR1, PHY RAPIDLY REGULATED 1  gene PAR1  function Encodes PHYTOCHROME RAPIDLY REGULATED1 (PAR1), an atypical basic helix-loop-helix (bHLP) protein. Closely related to PAR2 (At3g58850). Up regulated after simulated shade perception. Acts in the nucleus to control plant development and as a negative regulator of shade avoidance response. Functions as transcriptional repressor of auxin-responsive genes SAUR15 (AT4G38850) and SAUR68 (AT1G29510).  go_component nucleus|GO:0005634|17948056|IDA  go_process shade avoidance|GO:0009641|16565297|IEP  go_process shade avoidance|GO:0009641|17948056|IEP  go_process shade avoidance|GO:0009641|17948056|IMP  go_process developmental process|GO:0032502|17948056|IMP  product PAR1 (PHY RAPIDLY REGULATED 1)  note PHY RAPIDLY REGULATED 1 (PAR1); INVOLVED IN: developmental process, shade avoidance; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: PAR2 (PHY RAPIDLY REGULATED 2) (TAIR:AT3G58850.1); Has 47 Blast hits to 47 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G42870.1p  transcript_id AT2G42870.1  protein_id AT2G42870.1p  transcript_id AT2G42870.1  
At2g42880	chr2:017843924	0.0	C/17843924-17843947,17843127-17843535,17842673-17842800,17842489-17842548,17842260-17842409,17842007-17842162,17841648-17841859,17841466-17841567,17841093-17841235,17840572-17841008	AT2G42880.1  CDS  gene_syn ATMPK20, F7D19.12, F7D19_12  gene ATMPK20  function member of MAP Kinase  go_process signal transduction|GO:0007165|12119167|IC  go_function MAP kinase activity|GO:0004707|11544109|ISS  go_function MAP kinase activity|GO:0004707|12119167|ISS  product ATMPK20; MAP kinase  note ATMPK20; FUNCTIONS IN: MAP kinase activity; INVOLVED IN: signal transduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATMPK19; MAP kinase (TAIR:AT3G14720.1); Has 87348 Blast hits to 86392 proteins in 2447 species: Archae - 41; Bacteria - 7482; Metazoa - 37631; Fungi - 8094; Plants - 16776; Viruses - 536; Other Eukaryotes - 16788 (source: NCBI BLink).  protein_id AT2G42880.1p  transcript_id AT2G42880.1  protein_id AT2G42880.1p  transcript_id AT2G42880.1  
At2g42885	chr2:017846506	0.0	C/17846506-17846593,17846115-17846266	AT2G42885.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G03933.1); Has 16 Blast hits to 16 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G42885.1p  transcript_id AT2G42885.1  protein_id AT2G42885.1p  transcript_id AT2G42885.1  
At2g42890	chr2:017850077	0.0	W/17850077-17850098,17850615-17850665,17850760-17850876,17850967-17851433,17851536-17851694,17851780-17851896,17852012-17852163,17852243-17852334,17852424-17853315,17853387-17853471,17853558-17853626,17853776-17853958,17854080-17854205	AT2G42890.1  CDS  gene_syn AML2, ARABIDOPSIS-MEI2-LIKE 2, F7D19.11, F7D19_11  gene AML2  function A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML2 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. AML2 is expressed during early embryo development (heart and torpedo stage) and predominantly in vegetative organs; no significant accumulation was detected in floral apices.  go_component chloroplast|GO:0009507||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||ISS  product AML2 (ARABIDOPSIS-MEI2-LIKE 2); RNA binding / nucleic acid binding / nucleotide binding  note ARABIDOPSIS-MEI2-LIKE 2 (AML2); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), RNA recognition motif 2 (InterPro:IPR007201), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: AML5 (ARABIDOPSIS MEI2-LIKE PROTEIN 5); RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT1G29400.2); Has 5908 Blast hits to 4664 proteins in 266 species: Archae - 6; Bacteria - 18; Metazoa - 3683; Fungi - 787; Plants - 786; Viruses - 0; Other Eukaryotes - 628 (source: NCBI BLink).  protein_id AT2G42890.1p  transcript_id AT2G42890.1  protein_id AT2G42890.1p  transcript_id AT2G42890.1  
At2g42890	chr2:017850632	0.0	W/17850632-17850665,17850760-17850876,17850967-17851433,17851536-17851694,17851780-17851896,17852012-17852163,17852243-17852334,17852424-17853315,17853387-17853471,17853558-17853626,17853776-17853958,17854080-17854205	AT2G42890.2  CDS  gene_syn AML2, ARABIDOPSIS-MEI2-LIKE 2, F7D19.11, F7D19_11  gene AML2  function A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML2 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. AML2 is expressed during early embryo development (heart and torpedo stage) and predominantly in vegetative organs; no significant accumulation was detected in floral apices.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||ISS  product AML2 (ARABIDOPSIS-MEI2-LIKE 2); RNA binding / nucleic acid binding / nucleotide binding  note ARABIDOPSIS-MEI2-LIKE 2 (AML2); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), RNA recognition motif 2 (InterPro:IPR007201), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: AML5 (ARABIDOPSIS MEI2-LIKE PROTEIN 5); RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT1G29400.2); Has 5901 Blast hits to 4660 proteins in 265 species: Archae - 6; Bacteria - 18; Metazoa - 3680; Fungi - 787; Plants - 782; Viruses - 0; Other Eukaryotes - 628 (source: NCBI BLink).  protein_id AT2G42890.2p  transcript_id AT2G42890.2  protein_id AT2G42890.2p  transcript_id AT2G42890.2  
At2g42890	chr2:017850632	0.0	W/17850632-17850665,17850760-17850876,17850967-17851433,17851536-17851694,17851780-17851896,17852012-17852163,17852243-17852334,17852424-17853315,17853387-17853471,17853558-17853626,17853776-17853958,17854080-17854205	AT2G42890.3  CDS  gene_syn AML2, ARABIDOPSIS-MEI2-LIKE 2, F7D19.11, F7D19_11  gene AML2  function A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML2 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. AML2 is expressed during early embryo development (heart and torpedo stage) and predominantly in vegetative organs; no significant accumulation was detected in floral apices.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||ISS  product AML2 (ARABIDOPSIS-MEI2-LIKE 2); RNA binding / nucleic acid binding / nucleotide binding  note ARABIDOPSIS-MEI2-LIKE 2 (AML2); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), RNA recognition motif 2 (InterPro:IPR007201), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: AML5 (ARABIDOPSIS MEI2-LIKE PROTEIN 5); RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT1G29400.2); Has 5901 Blast hits to 4660 proteins in 265 species: Archae - 6; Bacteria - 18; Metazoa - 3680; Fungi - 787; Plants - 782; Viruses - 0; Other Eukaryotes - 628 (source: NCBI BLink).  protein_id AT2G42890.3p  transcript_id AT2G42890.3  protein_id AT2G42890.3p  transcript_id AT2G42890.3  
At2g42900	chr2:017854599	0.0	W/17854599-17855429	AT2G42900.1  CDS  gene_syn F23E6.13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plant Basic Secretory Protein (InterPro:IPR007541); Has 25 Blast hits to 25 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G42900.1p  transcript_id AT2G42900.1  protein_id AT2G42900.1p  transcript_id AT2G42900.1  
At2g42910	chr2:017856396	0.0	W/17856396-17856568,17856932-17857247,17857347-17857442,17857548-17857616,17857715-17857843,17858051-17858150,17858264-17858394	AT2G42910.1  CDS  gene_syn F7D19.9, F7D19_9  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process nucleoside metabolic process|GO:0009116||IEA  go_process ribonucleoside monophosphate biosynthetic process|GO:0009156||IEA  go_process nucleotide biosynthetic process|GO:0009165||IEA  go_process cellular biosynthetic process|GO:0044249||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function ribose phosphate diphosphokinase activity|GO:0004749||IEA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process nucleotide biosynthetic process|GO:0009165||ISS  go_function ribose phosphate diphosphokinase activity|GO:0004749||ISS  product ribose-phosphate pyrophosphokinase 4 / phosphoribosyl diphosphate synthetase 4 (PRS4)  note ribose-phosphate pyrophosphokinase 4 / phosphoribosyl diphosphate synthetase 4 (PRS4); FUNCTIONS IN: magnesium ion binding, ribose phosphate diphosphokinase activity; INVOLVED IN: cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process; LOCATED IN: plasma membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836), Phosphoribosyl pyrophosphokinase (InterPro:IPR005946), Phosphoribosyl pyrophosphate synthetase, conserved site (InterPro:IPR000842); BEST Arabidopsis thaliana protein match is: ribose-phosphate pyrophosphokinase 3 / phosphoribosyl diphosphate synthetase 3 (PRS3) (TAIR:AT1G10700.1); Has 5964 Blast hits to 5964 proteins in 1459 species: Archae - 99; Bacteria - 3055; Metazoa - 283; Fungi - 211; Plants - 120; Viruses - 9; Other Eukaryotes - 2187 (source: NCBI BLink).  protein_id AT2G42910.1p  transcript_id AT2G42910.1  protein_id AT2G42910.1p  transcript_id AT2G42910.1  
At2g42920	chr2:017858705	0.0	W/17858705-17860384	AT2G42920.1  CDS  gene_syn F23E6.4  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G48910.1); Has 13698 Blast hits to 5167 proteins in 167 species: Archae - 0; Bacteria - 3; Metazoa - 152; Fungi - 63; Plants - 13173; Viruses - 0; Other Eukaryotes - 307 (source: NCBI BLink).  protein_id AT2G42920.1p  transcript_id AT2G42920.1  protein_id AT2G42920.1p  transcript_id AT2G42920.1  
At2g42930	chr2:017860868	0.0	C/17860868-17861272	AT2G42930.1  CDS  gene_syn F23E6.9, F23E6_9  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycosyl hydrolase family protein 17  note glycosyl hydrolase family protein 17; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30933.2); Has 717 Blast hits to 681 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 717; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G42930.1p  transcript_id AT2G42930.1  protein_id AT2G42930.1p  transcript_id AT2G42930.1  
At2g42940	chr2:017862497	0.0	C/17862497-17863270	AT2G42940.1  CDS  gene_syn F23E6.8, F23E6_8  go_component chloroplast|GO:0009507||IEA  go_function DNA binding|GO:0003677||IEA  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product DNA-binding family protein  note DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding, conserved site (InterPro:IPR017956), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: DNA-binding protein-related (TAIR:AT2G45430.1); Has 424 Blast hits to 422 proteins in 20 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 417; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G42940.1p  transcript_id AT2G42940.1  protein_id AT2G42940.1p  transcript_id AT2G42940.1  
At2g42950	chr2:017864059	0.0	W/17864059-17864192,17864298-17864661,17864751-17864939,17865037-17865128,17865419-17865478,17865570-17865639,17865730-17865933,17866015-17866407	AT2G42950.1  CDS  gene_syn F7D19.5, F7D19_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29820.2); Has 426 Blast hits to 426 proteins in 204 species: Archae - 0; Bacteria - 376; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT2G42950.1p  transcript_id AT2G42950.1  protein_id AT2G42950.1p  transcript_id AT2G42950.1  
At2g42955	chr2:017867402	0.0	C/17867402-17867572,17867142-17867274,17866686-17867023	AT2G42955.1  CDS  gene_syn F7D19.3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30615.1); Has 38 Blast hits to 28 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G42955.1p  transcript_id AT2G42955.1  protein_id AT2G42955.1p  transcript_id AT2G42955.1  
At2g42960	chr2:017869981	0.0	C/17869981-17870630,17869792-17869896,17869597-17869719,17869340-17869510,17869101-17869230,17868791-17869000,17868597-17868692	AT2G42960.1  CDS  gene_syn F7D19.4, F7D19_4  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G59110.1); Has 88722 Blast hits to 87573 proteins in 3113 species: Archae - 57; Bacteria - 8311; Metazoa - 38690; Fungi - 6941; Plants - 18995; Viruses - 385; Other Eukaryotes - 15343 (source: NCBI BLink).  protein_id AT2G42960.1p  transcript_id AT2G42960.1  protein_id AT2G42960.1p  transcript_id AT2G42960.1  
At2g42970	chr2:017873690	0.0	W/17873690-17873762	AT2G42970.1  tRNA  gene_syn 49299.TRNA-ARG-1, 51061.TRNA-ARG-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: ACG)  transcript_id AT2G42970.1  
At2g42975	chr2:017873998	0.0	W/17873998-17874193,17874372-17874440,17874522-17874820	AT2G42975.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; Has 19 Blast hits to 19 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 2; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G42975.1p  transcript_id AT2G42975.1  protein_id AT2G42975.1p  transcript_id AT2G42975.1  
At2g42980	chr2:017875005	0.0	C/17875005-17876588	AT2G42980.1  CDS  gene_syn F23E6.3, F23E6_3  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT3G59080.1); Has 1726 Blast hits to 1706 proteins in 181 species: Archae - 0; Bacteria - 2; Metazoa - 327; Fungi - 144; Plants - 1151; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).  protein_id AT2G42980.1p  transcript_id AT2G42980.1  protein_id AT2G42980.1p  transcript_id AT2G42980.1  
At2g42990	chr2:017879056	0.0	W/17879056-17879424,17879517-17880200	AT2G42990.1  CDS  gene_syn F23E6.2, F23E6_2  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT2G04570.1); Has 1784 Blast hits to 1768 proteins in 135 species: Archae - 0; Bacteria - 184; Metazoa - 1; Fungi - 6; Plants - 1578; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT2G42990.1p  transcript_id AT2G42990.1  protein_id AT2G42990.1p  transcript_id AT2G42990.1  
At2g43000	chr2:017882392	0.0	C/17882392-17882584,17881694-17881968,17880617-17880976	AT2G43000.1  CDS  gene_syn Arabidopsis NAC domain containing protein 42, F23E6.1, F23E6_1, anac042  gene anac042  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac042 (Arabidopsis NAC domain containing protein 42); transcription factor  note Arabidopsis NAC domain containing protein 42 (anac042); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT3G12910.1); Has 1581 Blast hits to 1579 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1581; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G43000.1p  transcript_id AT2G43000.1  protein_id AT2G43000.1p  transcript_id AT2G43000.1  
At2g43010	chr2:017887003	0.0	W/17887003-17887067,17887158-17887812,17887905-17887985,17888114-17888179,17888260-17888577,17888716-17888823	AT2G43010.1  CDS  gene_syn MFL8.13, MFL8_13, PIF4, SRL2, phytochrome interacting factor 4  gene PIF4  function Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Involved in shade avoidance response. Protein abundance is negatively regulated by PhyB.  go_component nucleus|GO:0005634|12006496|IDA  go_process de-etiolation|GO:0009704|18252845|IMP  go_process red or far red light signaling pathway|GO:0010017|12006496|IMP  go_process red light signaling pathway|GO:0010161|12006496|IGI  go_function DNA binding|GO:0003677|12006496|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function protein binding|GO:0005515|12006496|IPI  product PIF4 (phytochrome interacting factor 4); DNA binding / protein binding / transcription factor  note phytochrome interacting factor 4 (PIF4); FUNCTIONS IN: protein binding, transcription factor activity, DNA binding; INVOLVED IN: red or far red light signaling pathway, de-etiolation, red light signaling pathway; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6); DNA binding / transcription factor (TAIR:AT3G59060.1); Has 2838 Blast hits to 2838 proteins in 266 species: Archae - 0; Bacteria - 0; Metazoa - 819; Fungi - 115; Plants - 1873; Viruses - 2; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT2G43010.1p  transcript_id AT2G43010.1  protein_id AT2G43010.1p  transcript_id AT2G43010.1  
At2g43010	chr2:017887003	0.0	W/17887003-17887067,17887158-17887812,17887905-17887985,17888114-17888179,17888260-17888577,17888722-17888823	AT2G43010.2  CDS  gene_syn MFL8.13, MFL8_13, PIF4, SRL2, phytochrome interacting factor 4  gene PIF4  function Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Involved in shade avoidance response. Protein abundance is negatively regulated by PhyB.  go_component nucleus|GO:0005634|12006496|IDA  go_process de-etiolation|GO:0009704|18252845|IMP  go_process red or far red light signaling pathway|GO:0010017|12006496|IMP  go_process red light signaling pathway|GO:0010161|12006496|IGI  go_function DNA binding|GO:0003677|12006496|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function protein binding|GO:0005515|12006496|IPI  product PIF4 (phytochrome interacting factor 4); DNA binding / protein binding / transcription factor  note phytochrome interacting factor 4 (PIF4); FUNCTIONS IN: protein binding, transcription factor activity, DNA binding; INVOLVED IN: red or far red light signaling pathway, de-etiolation, red light signaling pathway; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6); DNA binding / transcription factor (TAIR:AT3G59060.1); Has 2838 Blast hits to 2838 proteins in 265 species: Archae - 0; Bacteria - 0; Metazoa - 818; Fungi - 111; Plants - 1878; Viruses - 2; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT2G43010.2p  transcript_id AT2G43010.2  protein_id AT2G43010.2p  transcript_id AT2G43010.2  
At2g43018	chr2:017891767	0.0	W/17891767-17891934	AT2G43018.1  CDS  gene_syn CPuORF17, Conserved peptide upstream open reading frame 17  gene CPuORF17  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF17 represents a conserved upstream opening reading frame relative to major ORF AT2G43020.1  go_component endomembrane system|GO:0012505||IEA  product CPuORF17 (Conserved peptide upstream open reading frame 17)  note Conserved peptide upstream open reading frame 17 (CPuORF17); LOCATED IN: endomembrane system; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G43018.1p  transcript_id AT2G43018.1  protein_id AT2G43018.1p  transcript_id AT2G43018.1  
At2g43020	chr2:017891945	0.0	W/17891945-17891984,17892357-17892472,17892558-17892646,17892743-17892856,17892948-17893035,17893150-17893235,17893331-17893433,17893524-17893621,17893702-17894440	AT2G43020.1  CDS  gene_syn ATPAO2, MFL8.12, MFL8_12, Polyamine oxidase 2  gene ATPAO2  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function amine oxidase activity|GO:0008131||ISS  product ATPAO2 (Polyamine oxidase 2); amine oxidase/ electron carrier/ oxidoreductase  note Polyamine oxidase 2 (ATPAO2); FUNCTIONS IN: electron carrier activity, amine oxidase activity, oxidoreductase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), Flavin-containing amine oxidase (InterPro:IPR001613); BEST Arabidopsis thaliana protein match is: ATPAO3 (Polyamine oxidase 3); polyamine oxidase (TAIR:AT3G59050.1); Has 4506 Blast hits to 4196 proteins in 651 species: Archae - 58; Bacteria - 1363; Metazoa - 1257; Fungi - 358; Plants - 368; Viruses - 0; Other Eukaryotes - 1102 (source: NCBI BLink).  protein_id AT2G43020.1p  transcript_id AT2G43020.1  protein_id AT2G43020.1p  transcript_id AT2G43020.1  
At2g43030	chr2:017894898	0.0	W/17894898-17895713	AT2G43030.1  CDS  gene_syn MFL8.11, MFL8_11  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L3 family protein  note ribosomal protein L3 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L3 (InterPro:IPR000597), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: RPL3P (RIBOSOMAL PROTEIN L3 PLASTID); structural constituent of ribosome (TAIR:AT3G17465.1); Has 5932 Blast hits to 5931 proteins in 1564 species: Archae - 176; Bacteria - 2905; Metazoa - 115; Fungi - 81; Plants - 55; Viruses - 0; Other Eukaryotes - 2600 (source: NCBI BLink).  protein_id AT2G43030.1p  transcript_id AT2G43030.1  protein_id AT2G43030.1p  transcript_id AT2G43030.1  
At2g43040	chr2:017898351	0.0	C/17898351-17898524,17898015-17898267,17896705-17897915,17896467-17896614,17896049-17896377	AT2G43040.1  CDS  gene_syn MFL8.10, MFL8_10, NPG1, no pollen germination 1  gene NPG1  function encodes a calmodulin-binding protein that is expressed specifically in pollen and is required for pollen development.  go_process pollen germination|GO:0009846|12928497|IMP  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function calmodulin binding|GO:0005516|12928497|IDA  product NPG1 (no pollen germination 1); calmodulin binding  note no pollen germination 1 (NPG1); FUNCTIONS IN: calmodulin binding; INVOLVED IN: pollen germination; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: NPGR2 (no pollen germination related 2); calmodulin binding (TAIR:AT4G28600.1); Has 370 Blast hits to 365 proteins in 109 species: Archae - 18; Bacteria - 59; Metazoa - 143; Fungi - 25; Plants - 79; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT2G43040.1p  transcript_id AT2G43040.1  protein_id AT2G43040.1p  transcript_id AT2G43040.1  
At2g43050	chr2:017902508	0.0	W/17902508-17903393,17903504-17904174	AT2G43050.1  CDS  gene_syn ATPMEPCRD, MFL8.9  gene ATPMEPCRD  go_component cell wall|GO:0005618||IEA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product ATPMEPCRD; enzyme inhibitor/ pectinesterase  note ATPMEPCRD; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase inhibitor (InterPro:IPR006501), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT3G59010.1); Has 1340 Blast hits to 1310 proteins in 219 species: Archae - 0; Bacteria - 321; Metazoa - 1; Fungi - 133; Plants - 885; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G43050.1p  transcript_id AT2G43050.1  protein_id AT2G43050.1p  transcript_id AT2G43050.1  
At2g43060	chr2:017909247	0.0	W/17909247-17909717	AT2G43060.1  CDS  gene_syn MFL8.8  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|12679534|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092); Has 145 Blast hits to 145 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G43060.1p  transcript_id AT2G43060.1  protein_id AT2G43060.1p  transcript_id AT2G43060.1  
At2g43070	chr2:017914627	0.0	C/17914627-17914776,17914335-17914493,17914094-17914205,17913884-17914003,17913608-17913762,17913213-17913392,17913077-17913111,17912835-17912991,17912578-17912631,17912413-17912505,17911932-17912074,17911714-17911784,17911439-17911522,17911233-17911342	AT2G43070.1  CDS  go_component plasma membrane|GO:0005886|17151019|IDA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  go_function peptidase activity|GO:0008233||ISS  product protease-associated (PA) domain-containing protein  note protease-associated (PA) domain-containing protein; FUNCTIONS IN: peptidase activity, aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22B, signal peptide peptidase (InterPro:IPR007369); BEST Arabidopsis thaliana protein match is: aspartic-type endopeptidase/ peptidase (TAIR:AT1G05820.1); Has 1200 Blast hits to 1180 proteins in 204 species: Archae - 4; Bacteria - 104; Metazoa - 518; Fungi - 99; Plants - 272; Viruses - 0; Other Eukaryotes - 203 (source: NCBI BLink).  protein_id AT2G43070.1p  transcript_id AT2G43070.1  protein_id AT2G43070.1p  transcript_id AT2G43070.1  
At2g43080	chr2:017915755	0.0	W/17915755-17915818,17915989-17916036,17916308-17916364,17916537-17916589,17916858-17916923,17917193-17917267,17917500-17917574,17917667-17917737,17917831-17917882,17918131-17918220,17918309-17918401,17918492-17918599	AT2G43080.1  CDS  gene_syn A. THALIANA P4H ISOFORM 1, AT-P4H-1, PROLYL 4-HYDROXYLASE  gene AT-P4H-1  function Encodes a prolyl-4 hydroxylase that can hydroxylate poly(L-proline),the collagen model peptide (Pro-Pro-Gly)10 and other proline rich peptides.  go_component endomembrane system|GO:0012505||IEA  go_process peptidyl-proline hydroxylation to 4-hydroxy-L-proline|GO:0018401|11976332|IDA  go_process peptidyl-proline hydroxylation to 4-hydroxy-L-proline|GO:0018401||ISS  go_function procollagen-proline 4-dioxygenase activity|GO:0004656|11976332|IDA  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product AT-P4H-1 (A. THALIANA P4H ISOFORM 1); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors / procollagen-proline 4-dioxygenase  note A. THALIANA P4H ISOFORM 1 (AT-P4H-1); FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, procollagen-proline 4-dioxygenase activity; INVOLVED IN: peptidyl-proline hydroxylation to 4-hydroxy-L-proline; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT1G20270.1); Has 1851 Blast hits to 1846 proteins in 223 species: Archae - 0; Bacteria - 204; Metazoa - 924; Fungi - 70; Plants - 221; Viruses - 12; Other Eukaryotes - 420 (source: NCBI BLink).  protein_id AT2G43080.1p  transcript_id AT2G43080.1  protein_id AT2G43080.1p  transcript_id AT2G43080.1  
At2g43090	chr2:017918957	0.0	W/17918957-17919712	AT2G43090.1  CDS  gene_syn MFL8.15  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function 3-isopropylmalate dehydratase activity|GO:0003861||IEA  go_process metabolic process|GO:0008152||ISS  go_function hydro-lyase activity|GO:0016836||ISS  product aconitase C-terminal domain-containing protein  note aconitase C-terminal domain-containing protein; FUNCTIONS IN: hydro-lyase activity, 3-isopropylmalate dehydratase activity; INVOLVED IN: response to salt stress, metabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 3-isopropylmalate dehydratase, small subunit (InterPro:IPR012305), Aconitase A/isopropylmalate dehydratase small subunit, swivel (InterPro:IPR000573), Aconitase/3-isopropylmalate dehydratase, swivel (InterPro:IPR015928), Aconitase-like core (InterPro:IPR015937); BEST Arabidopsis thaliana protein match is: aconitase C-terminal domain-containing protein (TAIR:AT3G58990.1); Has 5678 Blast hits to 5678 proteins in 1275 species: Archae - 220; Bacteria - 2969; Metazoa - 13; Fungi - 241; Plants - 45; Viruses - 0; Other Eukaryotes - 2190 (source: NCBI BLink).  protein_id AT2G43090.1p  transcript_id AT2G43090.1  protein_id AT2G43090.1p  transcript_id AT2G43090.1  
At2g43100	chr2:017920685	0.0	W/17920685-17921455	AT2G43100.1  CDS  gene_syn MFL8.14  go_component 3-isopropylmalate dehydratase complex|GO:0009316||IEA  go_component chloroplast|GO:0009507||IEA  go_process metabolic process|GO:0008152||IEA  go_process leucine biosynthetic process|GO:0009098||IEA  go_function 3-isopropylmalate dehydratase activity|GO:0003861||IEA  go_process metabolic process|GO:0008152||ISS  go_function hydro-lyase activity|GO:0016836||ISS  product aconitase C-terminal domain-containing protein  note aconitase C-terminal domain-containing protein; FUNCTIONS IN: hydro-lyase activity, 3-isopropylmalate dehydratase activity; INVOLVED IN: leucine biosynthetic process, metabolic process; LOCATED IN: 3-isopropylmalate dehydratase complex, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: 3-isopropylmalate dehydratase, small subunit (InterPro:IPR012305), Aconitase A/isopropylmalate dehydratase small subunit, swivel (InterPro:IPR000573), Aconitase/3-isopropylmalate dehydratase, swivel (InterPro:IPR015928), Aconitase-like core (InterPro:IPR015937); BEST Arabidopsis thaliana protein match is: aconitase C-terminal domain-containing protein (TAIR:AT2G43090.1); Has 5949 Blast hits to 5949 proteins in 1261 species: Archae - 224; Bacteria - 3135; Metazoa - 7; Fungi - 224; Plants - 45; Viruses - 0; Other Eukaryotes - 2314 (source: NCBI BLink).  protein_id AT2G43100.1p  transcript_id AT2G43100.1  protein_id AT2G43100.1p  transcript_id AT2G43100.1  
At2g43110	chr2:017922067	0.0	W/17922067-17922379,17922546-17922741,17922842-17922914,17923821-17923870,17923971-17924084,17924171-17924291	AT2G43110.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 154 Blast hits to 153 proteins in 63 species: Archae - 0; Bacteria - 4; Metazoa - 56; Fungi - 63; Plants - 16; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT2G43110.1p  transcript_id AT2G43110.1  protein_id AT2G43110.1p  transcript_id AT2G43110.1  
At2g43137	chr2:017923081	0.0	W/17923081-17923157	AT2G43137.1  snoRNA  gene_syn 41546.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT2G43137.1  
At2g43138	chr2:017923238	0.0	W/17923238-17923316	AT2G43138.1  snoRNA  gene_syn 41546.SNORNA00002  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT2G43138.1  
At2g43139	chr2:017923399	0.0	W/17923399-17923477	AT2G43139.1  snoRNA  gene_syn 41546.SNORNA00004  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT2G43139.1  
At2g43141	chr2:017923563	0.0	W/17923563-17923637	AT2G43141.1  snoRNA  gene_syn 41546.SNORNA00003  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT2G43141.1  
At2g43120	chr2:017927339	0.0	W/17927339-17927523,17927624-17927673,17927796-17927834,17927927-17927955,17928042-17928104,17928193-17928293,17928373-17928871	AT2G43120.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516|11782485|IEP  product pirin, putative  note pirin, putative; FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: stem, flower; CONTAINS InterPro DOMAIN/s: Pirin, C-terminal (InterPro:IPR008778), Pirin (InterPro:IPR012093), Cupin, RmlC-type (InterPro:IPR011051), Pirin, N-terminal (InterPro:IPR003829); BEST Arabidopsis thaliana protein match is: PRN (PIRIN); calmodulin binding (TAIR:AT3G59220.1); Has 5405 Blast hits to 5403 proteins in 856 species: Archae - 43; Bacteria - 2852; Metazoa - 62; Fungi - 147; Plants - 68; Viruses - 0; Other Eukaryotes - 2233 (source: NCBI BLink).  protein_id AT2G43120.1p  transcript_id AT2G43120.1  protein_id AT2G43120.1p  transcript_id AT2G43120.1  
At2g43130	chr2:017930571	0.0	C/17930571-17930904,17929899-17930209	AT2G43130.1  CDS  gene_syn ARA-4, ARA4, ARABIDOPSIS RAB GTPASE HOMOLOG A5C, ATRAB11F, ATRABA5C, F14B2.7, RABA5C  gene ARA4  function encodes a protein belonging to the Rab/Ypt family of small GTPases, which are implicated in intracellular vesicular traffic.  go_component plasma membrane|GO:0005886|17644812|IDA  go_function GTPase activity|GO:0003924||IEA  go_function protein binding|GO:0005515||IEA  go_function GTP binding|GO:0005525||IEA  go_component Golgi stack|GO:0005795|8676856|IDA  go_component Golgi-associated vesicle|GO:0005798|8676856|IDA  go_component trans-Golgi network|GO:0005802|8676856|IDA  go_process response to heat|GO:0009408|8676856|IEP  go_process inter-Golgi cisterna vesicle-mediated transport|GO:0048219|8676856|TAS  go_function GTP binding|GO:0005525||ISS  product ARA4; GTP binding / GTPase/ protein binding  note ARA4; FUNCTIONS IN: protein binding, GTP binding, GTPase activity; INVOLVED IN: response to heat, inter-Golgi cisterna vesicle-mediated transport; LOCATED IN: trans-Golgi network, Golgi stack, plasma membrane, Golgi-associated vesicle; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Rab11-related (InterPro:IPR015595), Ras small GTPase, Rho type (InterPro:IPR003578), Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: AtRABA5d (Arabidopsis Rab GTPase homolog A5d); GTP binding (TAIR:AT2G31680.1); Has 21273 Blast hits to 21240 proteins in 610 species: Archae - 15; Bacteria - 94; Metazoa - 11900; Fungi - 2447; Plants - 1868; Viruses - 19; Other Eukaryotes - 4930 (source: NCBI BLink).  protein_id AT2G43130.1p  transcript_id AT2G43130.1  protein_id AT2G43130.1p  transcript_id AT2G43130.1  
At2g43140	chr2:017935333	0.0	C/17935333-17935639,17933648-17933955,17932745-17932876,17932536-17932601,17932376-17932456	AT2G43140.1  CDS  gene_syn F14B2.8  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product DNA binding / transcription factor  note DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT1G05805.1); Has 937 Blast hits to 923 proteins in 54 species: Archae - 0; Bacteria - 2; Metazoa - 50; Fungi - 2; Plants - 870; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT2G43140.1p  transcript_id AT2G43140.1  protein_id AT2G43140.1p  transcript_id AT2G43140.1  
At2g43150	chr2:017945893	0.0	W/17945893-17946531	AT2G43150.1  CDS  gene_syn F14B2.9  go_component endomembrane system|GO:0012505||IEA  go_process plant-type cell wall organization|GO:0009664||IEA  go_function structural constituent of cell wall|GO:0005199||IEA  product proline-rich extensin-like family protein  note proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Extensin-like region (InterPro:IPR006706); Has 117548 Blast hits to 32359 proteins in 1305 species: Archae - 300; Bacteria - 16136; Metazoa - 48351; Fungi - 15669; Plants - 18324; Viruses - 3530; Other Eukaryotes - 15238 (source: NCBI BLink).  protein_id AT2G43150.1p  transcript_id AT2G43150.1  protein_id AT2G43150.1p  transcript_id AT2G43150.1  
At2g43160	chr2:017948884	0.0	W/17948884-17948918,17949022-17949073,17949313-17949392,17949482-17949560,17949660-17949743,17949862-17950007,17950275-17950577,17950784-17950825,17950914-17951012,17951086-17951279,17951527-17951762,17951841-17952419,17952909-17952920	AT2G43160.4  CDS  gene_syn F14B2.10  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function binding|GO:0005488||ISS  product epsin N-terminal homology (ENTH) domain-containing protein  note epsin N-terminal homology (ENTH) domain-containing protein; FUNCTIONS IN: binding; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Epsin, N-terminal (InterPro:IPR001026), Epsin-like, N-terminal (InterPro:IPR013809), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: epsin N-terminal homology (ENTH) domain-containing protein (TAIR:AT3G59290.1); Has 11160 Blast hits to 8142 proteins in 567 species: Archae - 31; Bacteria - 943; Metazoa - 4455; Fungi - 2412; Plants - 806; Viruses - 87; Other Eukaryotes - 2426 (source: NCBI BLink).  protein_id AT2G43160.4p  transcript_id AT2G43160.4  protein_id AT2G43160.4p  transcript_id AT2G43160.4  
At2g43160	chr2:017948884	0.0	W/17948884-17948918,17949022-17949073,17949313-17949392,17949482-17949560,17949660-17949743,17949862-17950007,17950275-17950577,17950784-17950825,17950914-17951012,17951086-17951279,17951527-17951762,17951841-17952690,17952780-17953267	AT2G43160.1  CDS  gene_syn F14B2.10  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function binding|GO:0005488||ISS  product epsin N-terminal homology (ENTH) domain-containing protein  note epsin N-terminal homology (ENTH) domain-containing protein; FUNCTIONS IN: binding; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Epsin, N-terminal (InterPro:IPR001026), Epsin-like, N-terminal (InterPro:IPR013809), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: epsin N-terminal homology (ENTH) domain-containing protein (TAIR:AT3G59290.1); Has 16593 Blast hits to 11738 proteins in 686 species: Archae - 48; Bacteria - 1215; Metazoa - 7596; Fungi - 3438; Plants - 1373; Viruses - 124; Other Eukaryotes - 2799 (source: NCBI BLink).  protein_id AT2G43160.1p  transcript_id AT2G43160.1  protein_id AT2G43160.1p  transcript_id AT2G43160.1  
At2g43160	chr2:017948884	0.0	W/17948884-17948918,17949022-17949073,17949313-17949392,17949482-17949560,17949660-17949743,17949862-17950007,17950275-17950577,17950784-17950825,17950914-17951012,17951086-17951279,17951527-17951762,17951841-17952690,17952780-17953267	AT2G43160.2  CDS  gene_syn F14B2.10  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function binding|GO:0005488||ISS  product epsin N-terminal homology (ENTH) domain-containing protein  note epsin N-terminal homology (ENTH) domain-containing protein; FUNCTIONS IN: binding; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Epsin, N-terminal (InterPro:IPR001026), Epsin-like, N-terminal (InterPro:IPR013809), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: epsin N-terminal homology (ENTH) domain-containing protein (TAIR:AT3G59290.1); Has 16593 Blast hits to 11738 proteins in 686 species: Archae - 48; Bacteria - 1215; Metazoa - 7596; Fungi - 3438; Plants - 1373; Viruses - 124; Other Eukaryotes - 2799 (source: NCBI BLink).  protein_id AT2G43160.2p  transcript_id AT2G43160.2  protein_id AT2G43160.2p  transcript_id AT2G43160.2  
At2g43160	chr2:017948884	0.0	W/17948884-17948918,17949022-17949073,17949313-17949392,17949482-17949560,17949660-17949743,17949862-17950007,17950275-17950577,17950784-17950825,17950914-17951012,17951086-17951279,17951527-17951762,17951841-17952690,17952780-17953267	AT2G43160.3  CDS  gene_syn F14B2.10  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function binding|GO:0005488||ISS  product epsin N-terminal homology (ENTH) domain-containing protein  note epsin N-terminal homology (ENTH) domain-containing protein; FUNCTIONS IN: binding; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Epsin, N-terminal (InterPro:IPR001026), Epsin-like, N-terminal (InterPro:IPR013809), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: epsin N-terminal homology (ENTH) domain-containing protein (TAIR:AT3G59290.1); Has 16593 Blast hits to 11738 proteins in 686 species: Archae - 48; Bacteria - 1215; Metazoa - 7596; Fungi - 3438; Plants - 1373; Viruses - 124; Other Eukaryotes - 2799 (source: NCBI BLink).  protein_id AT2G43160.3p  transcript_id AT2G43160.3  protein_id AT2G43160.3p  transcript_id AT2G43160.3  
At2g43180	chr2:017955441	0.0	C/17955441-17955774,17954748-17955235,17954537-17954659,17954313-17954451,17953921-17954231,17953832-17953837	AT2G43180.4  CDS  gene_syn F14B2.12  go_component chloroplast|GO:0009507|18431481|IDA  go_function catalytic activity|GO:0003824||IEA  product catalytic  note catalytic; FUNCTIONS IN: catalytic activity; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813); BEST Arabidopsis thaliana protein match is: mutase family protein (TAIR:AT1G77060.1); Has 4169 Blast hits to 4169 proteins in 637 species: Archae - 48; Bacteria - 1660; Metazoa - 19; Fungi - 112; Plants - 58; Viruses - 0; Other Eukaryotes - 2272 (source: NCBI BLink).  protein_id AT2G43180.4p  transcript_id AT2G43180.4  protein_id AT2G43180.4p  transcript_id AT2G43180.4  
At2g43180	chr2:017955441	0.0	C/17955441-17955774,17954748-17955235,17954537-17954659,17954313-17954451,17954032-17954228,17953921-17953957,17953719-17953837	AT2G43180.3  CDS  gene_syn F14B2.12  go_component chloroplast|GO:0009507|18431481|IDA  go_function catalytic activity|GO:0003824||IEA  product catalytic  note catalytic; FUNCTIONS IN: catalytic activity; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813); BEST Arabidopsis thaliana protein match is: mutase family protein (TAIR:AT1G77060.1); Has 4166 Blast hits to 4166 proteins in 637 species: Archae - 48; Bacteria - 1660; Metazoa - 19; Fungi - 112; Plants - 58; Viruses - 0; Other Eukaryotes - 2269 (source: NCBI BLink).  protein_id AT2G43180.3p  transcript_id AT2G43180.3  protein_id AT2G43180.3p  transcript_id AT2G43180.3  
At2g43180	chr2:017955441	0.0	C/17955441-17955774,17954748-17955235,17954537-17954659,17954313-17954451,17954032-17954231,17953921-17953957,17953719-17953837	AT2G43180.1  CDS  gene_syn F14B2.12  go_component chloroplast|GO:0009507|18431481|IDA  go_function catalytic activity|GO:0003824||IEA  product catalytic  note catalytic; FUNCTIONS IN: catalytic activity; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813); BEST Arabidopsis thaliana protein match is: mutase family protein (TAIR:AT1G77060.1); Has 4169 Blast hits to 4169 proteins in 637 species: Archae - 48; Bacteria - 1660; Metazoa - 19; Fungi - 112; Plants - 58; Viruses - 0; Other Eukaryotes - 2272 (source: NCBI BLink).  protein_id AT2G43180.1p  transcript_id AT2G43180.1  protein_id AT2G43180.1p  transcript_id AT2G43180.1  
At2g43180	chr2:017955441	0.0	C/17955441-17955774,17954748-17955235,17954537-17954659,17954313-17954451,17954032-17954231,17953921-17953957,17953832-17953866	AT2G43180.2  CDS  gene_syn F14B2.12  go_component chloroplast|GO:0009507|18431481|IDA  go_function catalytic activity|GO:0003824||IEA  product catalytic  note catalytic; FUNCTIONS IN: catalytic activity; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813); BEST Arabidopsis thaliana protein match is: mutase family protein (TAIR:AT1G77060.1); Has 4169 Blast hits to 4169 proteins in 637 species: Archae - 48; Bacteria - 1660; Metazoa - 19; Fungi - 112; Plants - 58; Viruses - 0; Other Eukaryotes - 2272 (source: NCBI BLink).  protein_id AT2G43180.2p  transcript_id AT2G43180.2  protein_id AT2G43180.2p  transcript_id AT2G43180.2  
At2g43190	chr2:017956220	0.0	W/17956220-17956430,17956517-17956599,17956690-17956952,17957090-17957158,17957295-17957353,17957523-17957624,17957730-17957833	AT2G43190.1  CDS  gene_syn F14B2.13  go_component ribonuclease MRP complex|GO:0000172||IEA  go_component nucleolar ribonuclease P complex|GO:0005655||IEA  go_component ribonuclease P complex|GO:0030677||IEA  go_process rRNA processing|GO:0006364||IEA  go_process mRNA cleavage|GO:0006379||IEA  go_process tRNA processing|GO:0008033||IEA  go_function RNA binding|GO:0003723||IEA  go_function ribonuclease activity|GO:0004540||IEA  go_function ribonuclease P activity|GO:0004526||ISS  product ribonuclease P family protein  note ribonuclease P family protein; FUNCTIONS IN: ribonuclease activity, ribonuclease P activity, RNA binding; INVOLVED IN: tRNA processing, mRNA cleavage, rRNA processing; LOCATED IN: ribonuclease P complex, nucleolar ribonuclease P complex, ribonuclease MRP complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease P/MRP, p29 subunit, eukaryotic/archaeal (InterPro:IPR002730), Ribonuclease P/MRP, p29 subunit, eukaryotic (InterPro:IPR016848); Has 223 Blast hits to 223 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 69; Plants - 16; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT2G43190.1p  transcript_id AT2G43190.1  protein_id AT2G43190.1p  transcript_id AT2G43190.1  
At2g43190	chr2:017956220	0.0	W/17956220-17956430,17956520-17956599,17956690-17956952,17957090-17957158,17957295-17957353,17957523-17957624,17957730-17957833	AT2G43190.2  CDS  gene_syn F14B2.13  go_component ribonuclease MRP complex|GO:0000172||IEA  go_component nucleolar ribonuclease P complex|GO:0005655||IEA  go_component ribonuclease P complex|GO:0030677||IEA  go_process rRNA processing|GO:0006364||IEA  go_process mRNA cleavage|GO:0006379||IEA  go_process tRNA processing|GO:0008033||IEA  go_function RNA binding|GO:0003723||IEA  go_function ribonuclease activity|GO:0004540||IEA  go_function ribonuclease P activity|GO:0004526||ISS  product ribonuclease P family protein  note ribonuclease P family protein; FUNCTIONS IN: ribonuclease activity, ribonuclease P activity, RNA binding; INVOLVED IN: tRNA processing, mRNA cleavage, rRNA processing; LOCATED IN: ribonuclease P complex, nucleolar ribonuclease P complex, ribonuclease MRP complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease P/MRP, p29 subunit, eukaryotic/archaeal (InterPro:IPR002730), Ribonuclease P/MRP, p29 subunit, eukaryotic (InterPro:IPR016848); Has 219 Blast hits to 219 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 69; Plants - 16; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT2G43190.2p  transcript_id AT2G43190.2  protein_id AT2G43190.2p  transcript_id AT2G43190.2  
At2g43190	chr2:017956220	0.0	W/17956220-17956430,17956520-17956599,17956690-17956952,17957090-17957158,17957295-17957353,17957523-17957624,17957730-17957833	AT2G43190.3  CDS  gene_syn F14B2.13  go_component ribonuclease MRP complex|GO:0000172||IEA  go_component nucleolar ribonuclease P complex|GO:0005655||IEA  go_component ribonuclease P complex|GO:0030677||IEA  go_process rRNA processing|GO:0006364||IEA  go_process mRNA cleavage|GO:0006379||IEA  go_process tRNA processing|GO:0008033||IEA  go_function RNA binding|GO:0003723||IEA  go_function ribonuclease activity|GO:0004540||IEA  go_function ribonuclease P activity|GO:0004526||ISS  product ribonuclease P family protein  note ribonuclease P family protein; FUNCTIONS IN: ribonuclease activity, ribonuclease P activity, RNA binding; INVOLVED IN: tRNA processing, mRNA cleavage, rRNA processing; LOCATED IN: ribonuclease P complex, nucleolar ribonuclease P complex, ribonuclease MRP complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease P/MRP, p29 subunit, eukaryotic/archaeal (InterPro:IPR002730), Ribonuclease P/MRP, p29 subunit, eukaryotic (InterPro:IPR016848); Has 219 Blast hits to 219 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 69; Plants - 16; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT2G43190.3p  transcript_id AT2G43190.3  protein_id AT2G43190.3p  transcript_id AT2G43190.3  
At2g43200	chr2:017958230	0.0	W/17958230-17958898,17959015-17959225,17959337-17959634,17959717-17960094,17960167-17960244,17960335-17960536	AT2G43200.1  CDS  gene_syn F14B2.14  product dehydration-responsive family protein  note dehydration-responsive family protein; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive family protein (TAIR:AT1G33170.1); Has 674 Blast hits to 653 proteins in 84 species: Archae - 12; Bacteria - 104; Metazoa - 4; Fungi - 3; Plants - 494; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT2G43200.1p  transcript_id AT2G43200.1  protein_id AT2G43200.1p  transcript_id AT2G43200.1  
At2g43210	chr2:017960942	0.0	W/17960942-17961038,17961252-17961304,17961410-17961491,17961668-17961733,17961827-17961894,17961972-17962190,17962272-17962800,17962989-17963231,17963322-17963560	AT2G43210.1  CDS  gene_syn F14B2.15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product UBX domain-containing protein  note UBX domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012); Has 1155 Blast hits to 742 proteins in 155 species: Archae - 0; Bacteria - 70; Metazoa - 347; Fungi - 206; Plants - 87; Viruses - 16; Other Eukaryotes - 429 (source: NCBI BLink).  protein_id AT2G43210.1p  transcript_id AT2G43210.1  protein_id AT2G43210.1p  transcript_id AT2G43210.1  
At2g43210	chr2:017960942	0.0	W/17960942-17961038,17961252-17961304,17961410-17961491,17961668-17961733,17961827-17961894,17961972-17962190,17962272-17962800,17962989-17963231,17963322-17963560	AT2G43210.2  CDS  gene_syn F14B2.15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product UBX domain-containing protein  note UBX domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012); Has 1155 Blast hits to 742 proteins in 155 species: Archae - 0; Bacteria - 70; Metazoa - 347; Fungi - 206; Plants - 87; Viruses - 16; Other Eukaryotes - 429 (source: NCBI BLink).  protein_id AT2G43210.2p  transcript_id AT2G43210.2  protein_id AT2G43210.2p  transcript_id AT2G43210.2  
At2g43220	chr2:017964340	0.0	W/17964340-17965956	AT2G43220.1  CDS  gene_syn F14B2.16  go_process intracellular signaling cascade|GO:0007242||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular signaling cascade; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Zinc finger, RING-type (InterPro:IPR001841), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT4G01910.1); Has 1126 Blast hits to 575 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 87; Fungi - 0; Plants - 1023; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT2G43220.1p  transcript_id AT2G43220.1  protein_id AT2G43220.1p  transcript_id AT2G43220.1  
At2g43230	chr2:017966475	0.0	W/17966475-17966507,17966804-17966987,17967117-17967494,17967568-17967841,17967920-17968052,17968141-17968227,17968315-17968446	AT2G43230.1  CDS  gene_syn F14B2.17  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product serine/threonine protein kinase, putative  note serine/threonine protein kinase, putative; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase, active site (InterPro:IPR008266), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase, putative (TAIR:AT3G59350.3); Has 75169 Blast hits to 74488 proteins in 3030 species: Archae - 46; Bacteria - 7304; Metazoa - 32788; Fungi - 5358; Plants - 17181; Viruses - 264; Other Eukaryotes - 12228 (source: NCBI BLink).  protein_id AT2G43230.1p  transcript_id AT2G43230.1  protein_id AT2G43230.1p  transcript_id AT2G43230.1  
At2g43235	chr2:017970075	0.0	C/17970075-17970822,17969810-17969865,17969592-17969701,17969342-17969501,17969155-17969247,17968910-17969056	AT2G43235.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 17 Blast hits to 17 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G43235.1p  transcript_id AT2G43235.1  protein_id AT2G43235.1p  transcript_id AT2G43235.1  
At2g43240	chr2:017975127	0.0	C/17975127-17975300,17974798-17974914,17973994-17974071,17973241-17973345,17972987-17973109,17972783-17972860,17972276-17972345,17972046-17972153,17971746-17971879,17971582-17971661,17971437-17971482,17971280-17971330	AT2G43240.2  CDS  gene_syn F14B2.18  go_component Golgi membrane|GO:0000139||IEA  go_component integral to membrane|GO:0016021||IEA  go_process carbohydrate transport|GO:0008643||IEA  go_function sugar:hydrogen symporter activity|GO:0005351||IEA  go_process nucleotide-sugar transport|GO:0015780||ISS  go_function nucleotide-sugar transmembrane transporter activity|GO:0005338||ISS  product nucleotide-sugar transmembrane transporter/ sugar:hydrogen symporter  note nucleotide-sugar transmembrane transporter/ sugar:hydrogen symporter; FUNCTIONS IN: nucleotide-sugar transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: carbohydrate transport, nucleotide-sugar transport; LOCATED IN: integral to membrane, Golgi membrane; CONTAINS InterPro DOMAIN/s: Nucleotide-sugar transporter (InterPro:IPR007271); BEST Arabidopsis thaliana protein match is: UTR6 (UDP-GALACTOSE TRANSPORTER 6); nucleotide-sugar transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT3G59360.2); Has 738 Blast hits to 732 proteins in 122 species: Archae - 0; Bacteria - 10; Metazoa - 477; Fungi - 72; Plants - 92; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).  protein_id AT2G43240.2p  transcript_id AT2G43240.2  protein_id AT2G43240.2p  transcript_id AT2G43240.2  
At2g43240	chr2:017975127	0.0	C/17975127-17975300,17974798-17974914,17974363-17974419,17973994-17974071,17973241-17973345,17972987-17973109,17972783-17972860,17972276-17972345,17972046-17972153,17971746-17971879,17971582-17971661,17971437-17971482,17971280-17971330	AT2G43240.1  CDS  gene_syn F14B2.18  go_component Golgi membrane|GO:0000139||IEA  go_component integral to membrane|GO:0016021||IEA  go_process carbohydrate transport|GO:0008643||IEA  go_function sugar:hydrogen symporter activity|GO:0005351||IEA  go_process nucleotide-sugar transport|GO:0015780||ISS  go_function nucleotide-sugar transmembrane transporter activity|GO:0005338||ISS  product nucleotide-sugar transmembrane transporter/ sugar:hydrogen symporter  note nucleotide-sugar transmembrane transporter/ sugar:hydrogen symporter; FUNCTIONS IN: nucleotide-sugar transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: carbohydrate transport, nucleotide-sugar transport; LOCATED IN: integral to membrane, Golgi membrane; CONTAINS InterPro DOMAIN/s: Nucleotide-sugar transporter (InterPro:IPR007271); BEST Arabidopsis thaliana protein match is: UTR6 (UDP-GALACTOSE TRANSPORTER 6); nucleotide-sugar transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT3G59360.2); Has 741 Blast hits to 731 proteins in 121 species: Archae - 0; Bacteria - 8; Metazoa - 477; Fungi - 76; Plants - 94; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT2G43240.1p  transcript_id AT2G43240.1  protein_id AT2G43240.1p  transcript_id AT2G43240.1  
At2g43250	chr2:017977619	0.0	W/17977619-17979496	AT2G43250.1  CDS  gene_syn F14B2.19  product unknown protein  note unknown protein; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 14 Blast hits to 14 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G43250.1p  transcript_id AT2G43250.1  protein_id AT2G43250.1p  transcript_id AT2G43250.1  
At2g43255	chr2:017980839	0.0	C/17980839-17980878,17980651-17980748,17980332-17980541,17980123-17980260,17979878-17980036	AT2G43255.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1298 (InterPro:IPR009721); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38995.1); Has 108 Blast hits to 106 proteins in 15 species: Archae - 0; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G43255.1p  transcript_id AT2G43255.1  protein_id AT2G43255.1p  transcript_id AT2G43255.1  
At2g43255	chr2:017980839	0.0	C/17980839-17980878,17980651-17980751,17980332-17980541,17980123-17980260,17979878-17980036	AT2G43255.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1298 (InterPro:IPR009721); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38995.1); Has 108 Blast hits to 106 proteins in 15 species: Archae - 0; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G43255.2p  transcript_id AT2G43255.2  protein_id AT2G43255.2p  transcript_id AT2G43255.2  
At2g43260	chr2:017984669	0.0	C/17984669-17985089,17983744-17984585	AT2G43260.1  CDS  gene_syn F14B2.20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product F-box family protein / S locus-related  note F-box family protein / S locus-related; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G43445.1); Has 942 Blast hits to 926 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 940; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G43260.1p  transcript_id AT2G43260.1  protein_id AT2G43260.1p  transcript_id AT2G43260.1  
At2g43261	chr2:017986438	0.0	C/17986438-17986559,17986249-17986351,17986072-17986156,17985737-17985996	AT2G43261.3  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 51 Blast hits to 51 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 30; Plants - 11; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT2G43261.3p  transcript_id AT2G43261.3  protein_id AT2G43261.3p  transcript_id AT2G43261.3  
At2g43261	chr2:017986438	0.0	C/17986438-17986559,17986249-17986351,17986072-17986156,17985737-17985996	AT2G43261.4  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 51 Blast hits to 51 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 30; Plants - 11; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT2G43261.4p  transcript_id AT2G43261.4  protein_id AT2G43261.4p  transcript_id AT2G43261.4  
At2g43261	chr2:017986438	0.0	C/17986438-17986559,17986249-17986351,17986072-17986156,17985824-17985996,17985693-17985747,17985581-17985615	AT2G43261.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 51 Blast hits to 51 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 30; Plants - 11; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT2G43261.1p  transcript_id AT2G43261.1  protein_id AT2G43261.1p  transcript_id AT2G43261.1  
At2g43261	chr2:017986438	0.0	C/17986438-17986559,17986249-17986351,17986072-17986156,17985824-17985996,17985699-17985747,17985581-17985615	AT2G43261.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 51 Blast hits to 51 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 30; Plants - 11; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT2G43261.2p  transcript_id AT2G43261.2  protein_id AT2G43261.2p  transcript_id AT2G43261.2  
At2g43270	chr2:017989098	0.0	C/17989098-17989491,17988828-17989018,17988207-17988785	AT2G43270.1  CDS  gene_syn F14B2.25, F14B2_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein / S locus-related (TAIR:AT2G43260.1); Has 388 Blast hits to 384 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 386; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G43270.1p  transcript_id AT2G43270.1  protein_id AT2G43270.1p  transcript_id AT2G43270.1  
At2g43280	chr2:017989739	0.0	W/17989739-17989739,17990138-17990541,17990646-17990861	AT2G43280.1  CDS  gene_syn F14B2.32  go_component cellular_component|GO:0005575||ND  go_process response to red or far red light|GO:0009639||ISS  product far-red impaired responsive family protein / FAR1 family protein  note far-red impaired responsive family protein / FAR1 family protein; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, FAR1-related (InterPro:IPR004330); BEST Arabidopsis thaliana protein match is: far-red impaired responsive family protein / FAR1 family protein (TAIR:AT3G07500.1); Has 433 Blast hits to 404 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 433; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G43280.1p  transcript_id AT2G43280.1  protein_id AT2G43280.1p  transcript_id AT2G43280.1  
At2g43290	chr2:017991308	0.0	C/17991308-17991955	AT2G43290.1  CDS  gene_syn F14B2.33, MSS3, multicopy suppressors of snf4 deficiency in yeast 3  gene MSS3  function Encodes calmodulin-like MSS3.  go_function calcium ion binding|GO:0005509||IEA  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product MSS3 (multicopy suppressors of snf4 deficiency in yeast 3); calcium ion binding  note multicopy suppressors of snf4 deficiency in yeast 3 (MSS3); FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding protein, putative (TAIR:AT3G59440.1); Has 21020 Blast hits to 14078 proteins in 1326 species: Archae - 2; Bacteria - 191; Metazoa - 9940; Fungi - 4336; Plants - 3189; Viruses - 2; Other Eukaryotes - 3360 (source: NCBI BLink).  protein_id AT2G43290.1p  transcript_id AT2G43290.1  protein_id AT2G43290.1p  transcript_id AT2G43290.1  
At2g43300	chr2:017995573	0.0	C/17995573-17995644	AT2G43300.1  tRNA  gene_syn 41546.TRNA-THR-1, 5554.TRNA-THR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Thr (anticodon: TGT)  transcript_id AT2G43300.1  
At2g43310	chr2:017996106	0.0	W/17996106-17996507	AT2G43310.1  CDS  gene_syn F14B2.31  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; Has 8 Blast hits to 8 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G43310.1p  transcript_id AT2G43310.1  protein_id AT2G43310.1p  transcript_id AT2G43310.1  
At2g43320	chr2:017999030	0.0	C/17999030-17999158,17998836-17998898,17998285-17998351,17998096-17998196,17997704-17997748,17997134-17997613,17996874-17997044	AT2G43320.1  CDS  gene_syn F14B2.22  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14000.1); Has 199 Blast hits to 194 proteins in 91 species: Archae - 0; Bacteria - 2; Metazoa - 98; Fungi - 25; Plants - 44; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT2G43320.1p  transcript_id AT2G43320.1  protein_id AT2G43320.1p  transcript_id AT2G43320.1  
At2g43320	chr2:017999030	0.0	C/17999030-17999158,17998836-17998898,17998285-17998351,17998096-17998196,17997704-17997748,17997134-17997613,17996874-17997044	AT2G43320.2  CDS  gene_syn F14B2.22  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14000.1); Has 199 Blast hits to 194 proteins in 91 species: Archae - 0; Bacteria - 2; Metazoa - 98; Fungi - 25; Plants - 44; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT2G43320.2p  transcript_id AT2G43320.2  protein_id AT2G43320.2p  transcript_id AT2G43320.2  
At2g43330	chr2:018001135	0.0	W/18001135-18001282,18001502-18001572,18001657-18001992,18002794-18003087,18003174-18003854	AT2G43330.1  CDS  gene_syn ATINT1, INOSITOL TRANSPORTER 1, INT1, T1O24.7  gene INT1  function Encodes a tonoplast-localized myo-inositol exporter, involved in efflux of myo-inositol from the vacuole to the cytosol. The gene is ubiquitously expressed. Reduced root growth in knock-out mutants grown on low inositol agar medium.  go_component vacuole|GO:0005773|15539469|IDA  go_component plant-type vacuole membrane|GO:0009705|18441213|IDA  go_component membrane|GO:0016020||ISS  go_process myo-inositol transport|GO:0015798|18441213|IMP  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function myo-inositol:hydrogen symporter activity|GO:0005366|18441213|IDA  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product INT1 (INOSITOL TRANSPORTER 1); carbohydrate transmembrane transporter/ myo-inositol:hydrogen symporter/ sugar:hydrogen symporter  note INOSITOL TRANSPORTER 1 (INT1); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, myo-inositol:hydrogen symporter activity; INVOLVED IN: myo-inositol transport; LOCATED IN: plant-type vacuole membrane, vacuole, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: INT2 (INOSITOL TRANSPORTER 2); carbohydrate transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT1G30220.1); Has 26064 Blast hits to 25649 proteins in 1456 species: Archae - 347; Bacteria - 12021; Metazoa - 5084; Fungi - 5491; Plants - 1599; Viruses - 0; Other Eukaryotes - 1522 (source: NCBI BLink).  protein_id AT2G43330.1p  transcript_id AT2G43330.1  protein_id AT2G43330.1p  transcript_id AT2G43330.1  
At2g43340	chr2:018007769	0.0	W/18007769-18008258,18008337-18008416	AT2G43340.1  CDS  gene_syn T1O24.8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31560.2); Has 128 Blast hits to 128 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 126; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G43340.1p  transcript_id AT2G43340.1  protein_id AT2G43340.1p  transcript_id AT2G43340.1  
At2g43350	chr2:018010372	0.0	C/18010372-18010533,18009924-18010000,18009767-18009828,18009559-18009677,18009309-18009476,18009195-18009227	AT2G43350.1  CDS  gene_syn ATGPX3, GLUTATHIONE PEROXIDASE 3, T1O24.9  gene ATGPX3  function Glutathione peroxidase. Functions as both a redox transducer and a scavenger in abscisic acid and drought stress responses. Interacts with ABI2 and ABI1.  go_function glutathione peroxidase activity|GO:0004602||IEA  go_component mitochondrion|GO:0005739|14617062|ISS  go_process abscisic acid mediated signaling|GO:0009738|16998070|IMP  go_process response to hydrogen peroxide|GO:0042542|16998070|IMP  go_process cellular response to water deprivation|GO:0042631|16998070|IMP  go_function glutathione peroxidase activity|GO:0004602||ISS  product ATGPX3 (GLUTATHIONE PEROXIDASE 3); glutathione peroxidase  note GLUTATHIONE PEROXIDASE 3 (ATGPX3); FUNCTIONS IN: glutathione peroxidase activity; INVOLVED IN: response to hydrogen peroxide, abscisic acid mediated signaling, cellular response to water deprivation; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336), Glutathione peroxidase (InterPro:IPR000889); BEST Arabidopsis thaliana protein match is: ATGPX1 (GLUTATHIONE PEROXIDASE 1); glutathione peroxidase (TAIR:AT2G25080.1); Has 5306 Blast hits to 5305 proteins in 1006 species: Archae - 0; Bacteria - 1872; Metazoa - 684; Fungi - 136; Plants - 239; Viruses - 8; Other Eukaryotes - 2367 (source: NCBI BLink).  protein_id AT2G43350.1p  transcript_id AT2G43350.1  protein_id AT2G43350.1p  transcript_id AT2G43350.1  
At2g43360	chr2:018012926	0.0	C/18012926-18013129,18012424-18012603,18012101-18012207,18011617-18011822,18011307-18011446,18010918-18011217	AT2G43360.1  CDS  gene_syn BIO2, BIOB, BIOTIN AUXOTROPH 2, BIOTIN AUXOTROPH B, BIOTIN SYNTHASE, T1O24.10  gene BIO2  function Catalyzes the conversion of dethiobiotin to biotin.  go_process biotin biosynthetic process|GO:0009102|8680961|TAS  go_process biotin biosynthetic process|GO:0009102|8819873|TAS  go_function biotin synthase activity|GO:0004076|8680961|IGI  go_function biotin synthase activity|GO:0004076|8819873|IGI  product BIO2 (BIOTIN AUXOTROPH 2); biotin synthase  note BIOTIN AUXOTROPH 2 (BIO2); FUNCTIONS IN: biotin synthase activity; INVOLVED IN: biotin biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Biotin and thiamin synthesis associated (InterPro:IPR010722), Aldolase-type TIM barrel (InterPro:IPR013785), Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Radical SAM (InterPro:IPR007197), Biotin synthase (InterPro:IPR002684); Has 2778 Blast hits to 2778 proteins in 1063 species: Archae - 111; Bacteria - 2034; Metazoa - 5; Fungi - 77; Plants - 37; Viruses - 0; Other Eukaryotes - 514 (source: NCBI BLink).  protein_id AT2G43360.1p  transcript_id AT2G43360.1  protein_id AT2G43360.1p  transcript_id AT2G43360.1  
At2g43370	chr2:018013431	0.0	W/18013431-18013578,18013671-18013768,18013852-18013903,18014097-18014167,18014345-18014435,18014532-18014607,18014707-18014785,18014990-18015376	AT2G43370.1  CDS  gene_syn T1O24.11  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product U1 small nuclear ribonucleoprotein 70 kDa, putative  note U1 small nuclear ribonucleoprotein 70 kDa, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K); RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT3G50670.1); Has 15940 Blast hits to 13539 proteins in 557 species: Archae - 10; Bacteria - 827; Metazoa - 9526; Fungi - 1771; Plants - 2091; Viruses - 3; Other Eukaryotes - 1712 (source: NCBI BLink).  protein_id AT2G43370.1p  transcript_id AT2G43370.1  protein_id AT2G43370.1p  transcript_id AT2G43370.1  
At2g43371	chr2:018015943	0.0	C/18015943-18016197	AT2G43371.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G43371.1p  transcript_id AT2G43371.1  protein_id AT2G43371.1p  transcript_id AT2G43371.1  
At2g43375	chr2:018017116	0.0	C/18017116-18018691	AT2G43375.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G43375.1  
At2g43386	chr2:018019512	0.0	W/18019512-18019682	AT2G43386.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G43386.1p  transcript_id AT2G43386.1  protein_id AT2G43386.1p  transcript_id AT2G43386.1  
At2g43390	chr2:018020500	0.0	C/18020500-18020844	AT2G43390.1  CDS  gene_syn T1O24.13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G43390.1p  transcript_id AT2G43390.1  protein_id AT2G43390.1p  transcript_id AT2G43390.1  
At2g43400	chr2:018021304	0.0	W/18021304-18021724,18021808-18021884,18021968-18022074,18022166-18022247,18022321-18022429,18022508-18022554,18022641-18022715,18022944-18023060,18023174-18023242,18023328-18023420,18023644-18023746,18023832-18023956,18024050-18024099,18024192-18024258,18024353-18024432,18024530-18024658,18024778-18024844,18024958-18025041	AT2G43400.1  CDS  gene_syn ETFQO, T1O24.14, electron-transfer flavoprotein:ubiquinone oxidoreductase  gene ETFQO  function Encodes a unique electron-transfer flavoprotein:ubiquinone oxidoreductase that is localized to the mitochondrion. Mutants are more sensitive to sugar starvation when plants are kept in the dark for long periods.  go_component mitochondrion|GO:0005739|18385124|IDA  go_function electron-transferring-flavoprotein dehydrogenase activity|GO:0004174||IEA  go_component mitochondrion|GO:0005739|16055629|IDA  go_component mitochondrial envelope|GO:0005740||ISS  go_process response to absence of light|GO:0009646|16055629|IEP  go_function catalytic activity|GO:0003824||ISS  go_function electron carrier activity|GO:0009055||ISS  product ETFQO (electron-transfer flavoprotein:ubiquinone oxidoreductase); catalytic/ electron carrier/ electron-transferring-flavoprotein dehydrogenase  note electron-transfer flavoprotein:ubiquinone oxidoreductase (ETFQO); FUNCTIONS IN: electron carrier activity, catalytic activity, electron-transferring-flavoprotein dehydrogenase activity; INVOLVED IN: response to absence of light; LOCATED IN: mitochondrial envelope, mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Electron transfer flavoprotein-ubiquinone oxidoreductase (InterPro:IPR007859); Has 4703 Blast hits to 4702 proteins in 680 species: Archae - 94; Bacteria - 1495; Metazoa - 131; Fungi - 102; Plants - 14; Viruses - 0; Other Eukaryotes - 2867 (source: NCBI BLink).  protein_id AT2G43400.1p  transcript_id AT2G43400.1  protein_id AT2G43400.1p  transcript_id AT2G43400.1  
At2g43410	chr2:018030720	0.0	C/18030720-18030989,18029106-18029348,18028848-18028904,18027929-18028761,18026397-18027699	AT2G43410.2  CDS  gene_syn FPA, T1O24.15  gene FPA  function FPA is a gene that regulates flowering time in Arabidopsis via a pathway that is independent of daylength (the autonomous pathway). Mutations in FPA result in extremely delayed flowering. Double mutants with FCA have reduced fertility and single/double mutants have defects in siRNA mediated chromatin silencing.  go_component chromatin|GO:0000785|17916737|IDA  go_process embryo sac development|GO:0009553|17916737|IGI  go_process embryonic development|GO:0009790|17916737|IGI  go_process positive regulation of flower development|GO:0009911|11402170|IMP  go_process vegetative to reproductive phase transition|GO:0010228|11402170|IMP  go_process chromatin silencing by small RNA|GO:0031048|17916737|IMP  go_function RNA binding|GO:0003723|11402170|ISS  go_function RNA binding|GO:0003723||ISS  product FPA; RNA binding  note FPA; FUNCTIONS IN: RNA binding; INVOLVED IN: embryonic development, positive regulation of flower development, embryo sac development, chromatin silencing by small RNA, vegetative to reproductive phase transition; LOCATED IN: chromatin; CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue C-terminal (InterPro:IPR012921), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT4G12640.1); Has 14517 Blast hits to 12117 proteins in 484 species: Archae - 12; Bacteria - 564; Metazoa - 8770; Fungi - 1854; Plants - 1895; Viruses - 9; Other Eukaryotes - 1413 (source: NCBI BLink).  protein_id AT2G43410.2p  transcript_id AT2G43410.2  protein_id AT2G43410.2p  transcript_id AT2G43410.2  
At2g43410	chr2:018030720	0.0	C/18030720-18030989,18029106-18029348,18028848-18028904,18027929-18028761,18026397-18027699	AT2G43410.3  CDS  gene_syn FPA, T1O24.15  gene FPA  function FPA is a gene that regulates flowering time in Arabidopsis via a pathway that is independent of daylength (the autonomous pathway). Mutations in FPA result in extremely delayed flowering. Double mutants with FCA have reduced fertility and single/double mutants have defects in siRNA mediated chromatin silencing.  go_component chromatin|GO:0000785|17916737|IDA  go_process embryo sac development|GO:0009553|17916737|IGI  go_process embryonic development|GO:0009790|17916737|IGI  go_process positive regulation of flower development|GO:0009911|11402170|IMP  go_process vegetative to reproductive phase transition|GO:0010228|11402170|IMP  go_process chromatin silencing by small RNA|GO:0031048|17916737|IMP  go_function RNA binding|GO:0003723|11402170|ISS  go_function RNA binding|GO:0003723||ISS  product FPA; RNA binding  note FPA; FUNCTIONS IN: RNA binding; INVOLVED IN: embryonic development, positive regulation of flower development, embryo sac development, chromatin silencing by small RNA, vegetative to reproductive phase transition; LOCATED IN: chromatin; CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue C-terminal (InterPro:IPR012921), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT4G12640.1); Has 14517 Blast hits to 12117 proteins in 484 species: Archae - 12; Bacteria - 564; Metazoa - 8770; Fungi - 1854; Plants - 1895; Viruses - 9; Other Eukaryotes - 1413 (source: NCBI BLink).  protein_id AT2G43410.3p  transcript_id AT2G43410.3  protein_id AT2G43410.3p  transcript_id AT2G43410.3  
At2g43410	chr2:018030720	0.0	C/18030720-18030989,18029106-18029348,18028848-18028904,18027929-18028761,18026397-18027699	AT2G43410.4  CDS  gene_syn FPA, T1O24.15  gene FPA  function FPA is a gene that regulates flowering time in Arabidopsis via a pathway that is independent of daylength (the autonomous pathway). Mutations in FPA result in extremely delayed flowering. Double mutants with FCA have reduced fertility and single/double mutants have defects in siRNA mediated chromatin silencing.  go_component chromatin|GO:0000785|17916737|IDA  go_process embryo sac development|GO:0009553|17916737|IGI  go_process embryonic development|GO:0009790|17916737|IGI  go_process positive regulation of flower development|GO:0009911|11402170|IMP  go_process vegetative to reproductive phase transition|GO:0010228|11402170|IMP  go_process chromatin silencing by small RNA|GO:0031048|17916737|IMP  go_function RNA binding|GO:0003723|11402170|ISS  go_function RNA binding|GO:0003723||ISS  product FPA; RNA binding  note FPA; FUNCTIONS IN: RNA binding; INVOLVED IN: embryonic development, positive regulation of flower development, embryo sac development, chromatin silencing by small RNA, vegetative to reproductive phase transition; LOCATED IN: chromatin; CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue C-terminal (InterPro:IPR012921), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT4G12640.1); Has 14517 Blast hits to 12117 proteins in 484 species: Archae - 12; Bacteria - 564; Metazoa - 8770; Fungi - 1854; Plants - 1895; Viruses - 9; Other Eukaryotes - 1413 (source: NCBI BLink).  protein_id AT2G43410.4p  transcript_id AT2G43410.4  protein_id AT2G43410.4p  transcript_id AT2G43410.4  
At2g43410	chr2:018030720	0.0	C/18030720-18030989,18029106-18029348,18028848-18028904,18028449-18028761,18027929-18028319,18026397-18027699	AT2G43410.1  CDS  gene_syn FPA, T1O24.15  gene FPA  function FPA is a gene that regulates flowering time in Arabidopsis via a pathway that is independent of daylength (the autonomous pathway). Mutations in FPA result in extremely delayed flowering. Double mutants with FCA have reduced fertility and single/double mutants have defects in siRNA mediated chromatin silencing.  go_component chromatin|GO:0000785|17916737|IDA  go_process embryo sac development|GO:0009553|17916737|IGI  go_process embryonic development|GO:0009790|17916737|IGI  go_process positive regulation of flower development|GO:0009911|11402170|IMP  go_process vegetative to reproductive phase transition|GO:0010228|11402170|IMP  go_process chromatin silencing by small RNA|GO:0031048|17916737|IMP  go_function RNA binding|GO:0003723|11402170|ISS  go_function RNA binding|GO:0003723||ISS  product FPA; RNA binding  note FPA; FUNCTIONS IN: RNA binding; INVOLVED IN: embryonic development, positive regulation of flower development, embryo sac development, chromatin silencing by small RNA, vegetative to reproductive phase transition; LOCATED IN: chromatin; CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue C-terminal (InterPro:IPR012921), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT4G12640.1); Has 14446 Blast hits to 12112 proteins in 484 species: Archae - 12; Bacteria - 564; Metazoa - 8701; Fungi - 1851; Plants - 1894; Viruses - 9; Other Eukaryotes - 1415 (source: NCBI BLink).  protein_id AT2G43410.1p  transcript_id AT2G43410.1  protein_id AT2G43410.1p  transcript_id AT2G43410.1  
At2g43420	chr2:018034690	0.0	C/18034690-18034936,18034450-18034539,18034239-18034372,18033982-18034152,18033723-18033839,18033548-18033627,18032950-18033142,18032759-18032861,18032216-18032390,18031904-18032060,18031757-18031823,18031493-18031644	AT2G43420.1  CDS  gene_syn T1O24.16  go_component plasma membrane|GO:0005886|17317660|IDA  go_process steroid biosynthetic process|GO:0006694||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function 3-beta-hydroxy-delta5-steroid dehydrogenase activity|GO:0003854||IEA  go_function binding|GO:0005488||IEA  go_process steroid biosynthetic process|GO:0006694||ISS  go_function 3-beta-hydroxy-delta5-steroid dehydrogenase activity|GO:0003854||ISS  product 3-beta hydroxysteroid dehydrogenase/isomerase family protein  note 3-beta hydroxysteroid dehydrogenase/isomerase family protein; FUNCTIONS IN: binding, 3-beta-hydroxy-delta5-steroid dehydrogenase activity, catalytic activity; INVOLVED IN: steroid biosynthetic process, metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388), 3-beta hydroxysteroid dehydrogenase/isomerase (InterPro:IPR002225), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: AT3BETAHSD/D2 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 2); 3-beta-hydroxy-delta5-steroid dehydrogenase/ sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) (TAIR:AT2G26260.1); Has 6593 Blast hits to 6583 proteins in 1228 species: Archae - 195; Bacteria - 3722; Metazoa - 477; Fungi - 195; Plants - 425; Viruses - 75; Other Eukaryotes - 1504 (source: NCBI BLink).  protein_id AT2G43420.1p  transcript_id AT2G43420.1  protein_id AT2G43420.1p  transcript_id AT2G43420.1  
At2g43430	chr2:018037439	0.0	C/18037439-18037630,18037138-18037341,18036711-18036834,18036366-18036466,18035973-18036047,18035802-18035900,18035569-18035715	AT2G43430.2  CDS  gene_syn GLX2-1, GLY1, GLYOXALASE 2-1, GLYOXALASE II, T1O24.17  gene GLX2-1  function glyoxalase II mitochondrial isozyme (Glx2-1) mRNA, nuclear  go_component cytoplasm|GO:0005737|9349270|NAS  go_process methylglyoxal catabolic process to D-lactate|GO:0019243|9349270|TAS  go_function hydroxyacylglutathione hydrolase activity|GO:0004416|9349270|IDA  product GLX2-1 (GLYOXALASE 2-1); hydroxyacylglutathione hydrolase  note GLYOXALASE 2-1 (GLX2-1); FUNCTIONS IN: hydroxyacylglutathione hydrolase activity; INVOLVED IN: methylglyoxal catabolic process to D-lactate; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase, class B, conserved site (InterPro:IPR001018), Beta-lactamase-like (InterPro:IPR001279), Hydroxyacylglutathione hydrolase (InterPro:IPR017782); BEST Arabidopsis thaliana protein match is: GLX2-4 (glyoxalase 2-4); hydrolase/ hydroxyacylglutathione hydrolase/ zinc ion binding (TAIR:AT1G06130.1); Has 10380 Blast hits to 10379 proteins in 1386 species: Archae - 197; Bacteria - 5459; Metazoa - 432; Fungi - 204; Plants - 131; Viruses - 0; Other Eukaryotes - 3957 (source: NCBI BLink).  protein_id AT2G43430.2p  transcript_id AT2G43430.2  protein_id AT2G43430.2p  transcript_id AT2G43430.2  
At2g43430	chr2:018038002	0.0	C/18038002-18038064,18037439-18037621,18037138-18037341,18036711-18036834,18036366-18036466,18035973-18036047,18035802-18035900,18035569-18035715	AT2G43430.1  CDS  gene_syn GLX2-1, GLY1, GLYOXALASE 2-1, GLYOXALASE II, T1O24.17  gene GLX2-1  function glyoxalase II mitochondrial isozyme (Glx2-1) mRNA, nuclear  go_component cytoplasm|GO:0005737|9349270|NAS  go_process methylglyoxal catabolic process to D-lactate|GO:0019243|9349270|TAS  go_function hydroxyacylglutathione hydrolase activity|GO:0004416|9349270|IDA  product GLX2-1 (GLYOXALASE 2-1); hydroxyacylglutathione hydrolase  note GLYOXALASE 2-1 (GLX2-1); FUNCTIONS IN: hydroxyacylglutathione hydrolase activity; INVOLVED IN: methylglyoxal catabolic process to D-lactate; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase, class B, conserved site (InterPro:IPR001018), Beta-lactamase-like (InterPro:IPR001279), Hydroxyacylglutathione hydrolase (InterPro:IPR017782); BEST Arabidopsis thaliana protein match is: GLX2-4 (glyoxalase 2-4); hydrolase/ hydroxyacylglutathione hydrolase/ zinc ion binding (TAIR:AT1G06130.2); Has 10380 Blast hits to 10379 proteins in 1386 species: Archae - 197; Bacteria - 5459; Metazoa - 432; Fungi - 204; Plants - 131; Viruses - 0; Other Eukaryotes - 3957 (source: NCBI BLink).  protein_id AT2G43430.1p  transcript_id AT2G43430.1  protein_id AT2G43430.1p  transcript_id AT2G43430.1  
At2g43440	chr2:018039326	0.0	W/18039326-18039734,18039803-18040599	AT2G43440.1  CDS  gene_syn T1O24.18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G43445.1); Has 740 Blast hits to 736 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 738; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G43440.1p  transcript_id AT2G43440.1  protein_id AT2G43440.1p  transcript_id AT2G43440.1  
At2g43445	chr2:018041511	0.0	W/18041511-18041913,18042181-18042995	AT2G43445.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G43440.1); Has 621 Blast hits to 612 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 619; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G43445.1p  transcript_id AT2G43445.1  protein_id AT2G43445.1p  transcript_id AT2G43445.1  
At2g43450	chr2:018044019	0.0	C/18044019-18044142,18043234-18043331	AT2G43450.1  CDS  gene_syn T1O24.19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 7 growth stages; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G43450.1p  transcript_id AT2G43450.1  protein_id AT2G43450.1p  transcript_id AT2G43450.1  
At2g43460	chr2:018047290	0.0	C/18047290-18047292,18046742-18046925,18046285-18046307	AT2G43460.1  CDS  gene_syn T1O24.20  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L38 (RPL38A)  note 60S ribosomal protein L38 (RPL38A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L38e (InterPro:IPR002675); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L38 (RPL38B) (TAIR:AT3G59540.1); Has 458 Blast hits to 458 proteins in 191 species: Archae - 3; Bacteria - 0; Metazoa - 220; Fungi - 79; Plants - 70; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT2G43460.1p  transcript_id AT2G43460.1  protein_id AT2G43460.1p  transcript_id AT2G43460.1  
At2g43465	chr2:018049353	0.0	C/18049353-18049709,18049162-18049222,18049016-18049064,18048881-18048938,18048710-18048797,18048524-18048642,18048310-18048435,18048101-18048194,18047878-18048032,18047732-18047791	AT2G43465.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: ProFAR isomerase-like (InterPro:IPR010759), ASCH domain (InterPro:IPR007374); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03320.1).  protein_id AT2G43465.1p  transcript_id AT2G43465.1  protein_id AT2G43465.1p  transcript_id AT2G43465.1  
At2g43470	chr2:018051088	0.0	C/18051088-18051218,18050866-18050971,18050680-18050748,18050488-18050557,18050309-18050382,18050148-18050209,18049944-18050064	AT2G43470.1  CDS  gene_syn T1O24.21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT3G07565.3); Has 129 Blast hits to 129 proteins in 25 species: Archae - 18; Bacteria - 8; Metazoa - 2; Fungi - 2; Plants - 87; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT2G43470.1p  transcript_id AT2G43470.1  protein_id AT2G43470.1p  transcript_id AT2G43470.1  
At2g43480	chr2:018053009	0.0	W/18053009-18053254,18053419-18053598,18053681-18053840,18053929-18054350	AT2G43480.1  CDS  gene_syn T1O24.22  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase family protein (TAIR:AT5G24070.1); Has 2737 Blast hits to 2724 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 171; Plants - 2545; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT2G43480.1p  transcript_id AT2G43480.1  protein_id AT2G43480.1p  transcript_id AT2G43480.1  
At2g43490	chr2:018058045	0.0	C/18058045-18058179,18057839-18057937,18057649-18057752,18056802-18057550,18056576-18056698,18056381-18056469,18056092-18056292,18055522-18056001,18055299-18055442	AT2G43490.5  CDS  gene_syn T1O24.23  go_component intracellular|GO:0005622||IEA  go_process regulation of Rab GTPase activity|GO:0032313||IEA  go_function RAB GTPase activator activity|GO:0005097||IEA  product RAB GTPase activator  note RAB GTPase activator; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: RabGAP/TBC domain-containing protein (TAIR:AT3G59570.1); Has 2897 Blast hits to 2520 proteins in 168 species: Archae - 0; Bacteria - 2; Metazoa - 1685; Fungi - 487; Plants - 348; Viruses - 0; Other Eukaryotes - 375 (source: NCBI BLink).  protein_id AT2G43490.5p  transcript_id AT2G43490.5  protein_id AT2G43490.5p  transcript_id AT2G43490.5  
At2g43490	chr2:018058045	0.0	C/18058045-18058179,18057839-18057937,18057649-18057752,18056802-18057550,18056576-18056698,18056381-18056469,18056092-18056292,18055522-18056001,18055359-18055442,18055106-18055273	AT2G43490.4  CDS  gene_syn T1O24.23  go_component intracellular|GO:0005622||IEA  go_process regulation of Rab GTPase activity|GO:0032313||IEA  go_function RAB GTPase activator activity|GO:0005097||IEA  product RAB GTPase activator  note RAB GTPase activator; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: RabGAP/TBC domain-containing protein (TAIR:AT3G59570.1); Has 2897 Blast hits to 2520 proteins in 168 species: Archae - 0; Bacteria - 2; Metazoa - 1685; Fungi - 487; Plants - 348; Viruses - 0; Other Eukaryotes - 375 (source: NCBI BLink).  protein_id AT2G43490.4p  transcript_id AT2G43490.4  protein_id AT2G43490.4p  transcript_id AT2G43490.4  
At2g43490	chr2:018058045	0.0	C/18058045-18058179,18057839-18057937,18057649-18057752,18056802-18057550,18056576-18056698,18056381-18056469,18056092-18056292,18055522-18056001,18055359-18055442,18055106-18055279	AT2G43490.1  CDS  gene_syn T1O24.23  go_component intracellular|GO:0005622||IEA  go_process regulation of Rab GTPase activity|GO:0032313||IEA  go_function RAB GTPase activator activity|GO:0005097||IEA  product RAB GTPase activator  note RAB GTPase activator; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: RabGAP/TBC domain-containing protein (TAIR:AT3G59570.1); Has 2891 Blast hits to 2520 proteins in 168 species: Archae - 0; Bacteria - 2; Metazoa - 1685; Fungi - 487; Plants - 342; Viruses - 0; Other Eukaryotes - 375 (source: NCBI BLink).  protein_id AT2G43490.1p  transcript_id AT2G43490.1  protein_id AT2G43490.1p  transcript_id AT2G43490.1  
At2g43490	chr2:018058045	0.0	C/18058045-18058179,18057839-18057937,18057649-18057752,18056802-18057550,18056576-18056698,18056381-18056469,18056092-18056292,18055522-18056001,18055359-18055442,18055106-18055279	AT2G43490.2  CDS  gene_syn T1O24.23  go_component intracellular|GO:0005622||IEA  go_process regulation of Rab GTPase activity|GO:0032313||IEA  go_function RAB GTPase activator activity|GO:0005097||IEA  product RAB GTPase activator  note RAB GTPase activator; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: RabGAP/TBC domain-containing protein (TAIR:AT3G59570.1); Has 2891 Blast hits to 2520 proteins in 168 species: Archae - 0; Bacteria - 2; Metazoa - 1685; Fungi - 487; Plants - 342; Viruses - 0; Other Eukaryotes - 375 (source: NCBI BLink).  protein_id AT2G43490.2p  transcript_id AT2G43490.2  protein_id AT2G43490.2p  transcript_id AT2G43490.2  
At2g43490	chr2:018058045	0.0	C/18058045-18058179,18057839-18057937,18057649-18057752,18056802-18057550,18056576-18056698,18056381-18056469,18056092-18056292,18055522-18056001,18055359-18055442,18055106-18055279	AT2G43490.3  CDS  gene_syn T1O24.23  go_component intracellular|GO:0005622||IEA  go_process regulation of Rab GTPase activity|GO:0032313||IEA  go_function RAB GTPase activator activity|GO:0005097||IEA  product RAB GTPase activator  note RAB GTPase activator; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: RabGAP/TBC domain-containing protein (TAIR:AT3G59570.1); Has 2891 Blast hits to 2520 proteins in 168 species: Archae - 0; Bacteria - 2; Metazoa - 1685; Fungi - 487; Plants - 342; Viruses - 0; Other Eukaryotes - 375 (source: NCBI BLink).  protein_id AT2G43490.3p  transcript_id AT2G43490.3  protein_id AT2G43490.3p  transcript_id AT2G43490.3  
At2g43500	chr2:018062715	0.0	W/18062715-18063659,18064254-18064292,18064382-18065113,18065206-18065365,18065413-18065769,18065840-18066450	AT2G43500.1  CDS  gene_syn T1O24.24  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product RWP-RK domain-containing protein  note RWP-RK domain-containing protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: RWP-RK domain-containing protein (TAIR:AT3G59580.2); Has 331 Blast hits to 248 proteins in 46 species: Archae - 0; Bacteria - 80; Metazoa - 4; Fungi - 2; Plants - 236; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G43500.1p  transcript_id AT2G43500.1  protein_id AT2G43500.1p  transcript_id AT2G43500.1  
At2g43500	chr2:018062715	0.0	W/18062715-18063659,18064254-18064292,18064382-18065113,18065206-18065365,18065413-18065769,18065840-18066450	AT2G43500.2  CDS  gene_syn T1O24.24  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product RWP-RK domain-containing protein  note RWP-RK domain-containing protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: RWP-RK domain-containing protein (TAIR:AT3G59580.2).  protein_id AT2G43500.2p  transcript_id AT2G43500.2  protein_id AT2G43500.2p  transcript_id AT2G43500.2  
At2g43510	chr2:018067211	0.0	W/18067211-18067271,18067412-18067620	AT2G43510.1  CDS  gene_syn ATTI1, T1O24.25, TRYPSIN INHIBITOR  gene ATTI1  function Member of the defensin-like (DEFL) family. Encodes putative trypsin inhibitor protein which may function in defense against herbivory.  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952|12694291|TAS  go_process defense response to fungus|GO:0050832|17257167|IMP  go_function serine-type endopeptidase inhibitor activity|GO:0004867|12694291|ISS  product ATTI1; serine-type endopeptidase inhibitor  note ATTI1; FUNCTIONS IN: serine-type endopeptidase inhibitor activity; INVOLVED IN: defense response to fungus, defense response; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Scorpion long chain toxin (InterPro:IPR002061), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: trypsin inhibitor, putative (TAIR:AT2G43535.1); Has 129 Blast hits to 129 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G43510.1p  transcript_id AT2G43510.1  protein_id AT2G43510.1p  transcript_id AT2G43510.1  
At2g43520	chr2:018068611	0.0	W/18068611-18068671,18068826-18069037	AT2G43520.1  CDS  gene_syn ATTI2, T1O24.26  gene ATTI2  function Encodes putative trypsin inhibitor protein which may function in defense against herbivory. Member of the defensin-like (DEFL) family.  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952|12694291|TAS  go_function serine-type endopeptidase inhibitor activity|GO:0004867|12694291|ISS  product ATTI2; serine-type endopeptidase inhibitor  note ATTI2; FUNCTIONS IN: serine-type endopeptidase inhibitor activity; INVOLVED IN: defense response; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Scorpion long chain toxin (InterPro:IPR002061), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: trypsin inhibitor, putative (TAIR:AT1G47540.1); Has 129 Blast hits to 129 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G43520.1p  transcript_id AT2G43520.1  protein_id AT2G43520.1p  transcript_id AT2G43520.1  
At2g43530	chr2:018070104	0.0	W/18070104-18070170,18070333-18070523	AT2G43530.1  CDS  gene_syn T1O24.27  function Encodes a defensin-like (DEFL) family protein.  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||IEA  go_function ion channel inhibitor activity|GO:0008200||IEA  product trypsin inhibitor, putative  note trypsin inhibitor, putative; FUNCTIONS IN: ion channel inhibitor activity; INVOLVED IN: defense response; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Scorpion long chain toxin (InterPro:IPR002061), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: ATTI2; serine-type endopeptidase inhibitor (TAIR:AT2G43520.1); Has 129 Blast hits to 129 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G43530.1p  transcript_id AT2G43530.1  protein_id AT2G43530.1p  transcript_id AT2G43530.1  
At2g43535	chr2:018071130	0.0	W/18071130-18071193,18071331-18071560	AT2G43535.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||IEA  go_function ion channel inhibitor activity|GO:0008200||IEA  product trypsin inhibitor, putative  note trypsin inhibitor, putative; FUNCTIONS IN: ion channel inhibitor activity; INVOLVED IN: defense response; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Scorpion long chain toxin (InterPro:IPR002061), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: ATTI1; serine-type endopeptidase inhibitor (TAIR:AT2G43510.1); Has 129 Blast hits to 129 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G43535.1p  transcript_id AT2G43535.1  protein_id AT2G43535.1p  transcript_id AT2G43535.1  
At2g43540	chr2:018072385	0.0	W/18072385-18072894	AT2G43540.1  CDS  gene_syn T1O24.28  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 14 Blast hits to 14 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G43540.1p  transcript_id AT2G43540.1  protein_id AT2G43540.1p  transcript_id AT2G43540.1  
At2g43550	chr2:018073263	0.0	W/18073263-18073359,18073437-18073651	AT2G43550.1  CDS  gene_syn T1O24.29  function Encodes a defensin-like (DEFL) family protein.  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||IEA  go_function ion channel inhibitor activity|GO:0008200||IEA  product trypsin inhibitor, putative  note trypsin inhibitor, putative; FUNCTIONS IN: ion channel inhibitor activity; INVOLVED IN: defense response; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Scorpion long chain toxin (InterPro:IPR002061), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: trypsin inhibitor, putative (TAIR:AT2G43535.1); Has 130 Blast hits to 130 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G43550.1p  transcript_id AT2G43550.1  protein_id AT2G43550.1p  transcript_id AT2G43550.1  
At2g43560	chr2:018075349	0.0	C/18075349-18075385,18074825-18075081,18074648-18074731,18074529-18074578,18074353-18074401,18074212-18074286,18073995-18074114	AT2G43560.1  CDS  gene_syn T1O24.30  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_process protein folding|GO:0006457||IEA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  go_component chloroplast thylakoid lumen|GO:0009543||ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  go_function FK506 binding|GO:0005528||ISS  product immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein  note immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FK506-binding protein 1 (FKBP13) (TAIR:AT5G45680.1); Has 6015 Blast hits to 5817 proteins in 1052 species: Archae - 33; Bacteria - 2800; Metazoa - 1234; Fungi - 332; Plants - 391; Viruses - 0; Other Eukaryotes - 1225 (source: NCBI BLink).  protein_id AT2G43560.1p  transcript_id AT2G43560.1  protein_id AT2G43560.1p  transcript_id AT2G43560.1  
At2g43570	chr2:018077021	0.0	C/18077021-18077435,18076389-18076807	AT2G43570.1  CDS  gene_syn F18O19.32  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process cell wall macromolecule catabolic process|GO:0016998||IEA  go_function chitinase activity|GO:0004568||IEA  go_function chitin binding|GO:0008061||IEA  go_function chitinase activity|GO:0004568||ISS  product chitinase, putative  note chitinase, putative; FUNCTIONS IN: chitin binding, chitinase activity; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: apoplast, plant-type cell wall; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: chitinase, putative (TAIR:AT2G43590.1); Has 1931 Blast hits to 1721 proteins in 374 species: Archae - 0; Bacteria - 368; Metazoa - 33; Fungi - 172; Plants - 1246; Viruses - 9; Other Eukaryotes - 103 (source: NCBI BLink).  protein_id AT2G43570.1p  transcript_id AT2G43570.1  protein_id AT2G43570.1p  transcript_id AT2G43570.1  
At2g43580	chr2:018079620	0.0	C/18079620-18080013,18078817-18079220	AT2G43580.1  CDS  gene_syn F18O19.31  go_component endomembrane system|GO:0012505||IEA  go_process cell wall macromolecule catabolic process|GO:0016998||IEA  go_function chitinase activity|GO:0004568||IEA  go_function chitin binding|GO:0008061||IEA  go_function chitinase activity|GO:0004568||ISS  product chitinase, putative  note chitinase, putative; FUNCTIONS IN: chitin binding, chitinase activity; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: chitinase, putative (TAIR:AT2G43590.1); Has 1783 Blast hits to 1603 proteins in 355 species: Archae - 0; Bacteria - 339; Metazoa - 33; Fungi - 136; Plants - 1205; Viruses - 5; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT2G43580.1p  transcript_id AT2G43580.1  protein_id AT2G43580.1p  transcript_id AT2G43580.1  
At2g43590	chr2:018082359	0.0	C/18082359-18082749,18081592-18081995	AT2G43590.1  CDS  gene_syn F18O19.30  go_component endomembrane system|GO:0012505||IEA  go_process cell wall macromolecule catabolic process|GO:0016998||IEA  go_function chitinase activity|GO:0004568||IEA  go_function chitin binding|GO:0008061||IEA  go_function chitinase activity|GO:0004568||ISS  product chitinase, putative  note chitinase, putative; FUNCTIONS IN: chitin binding, chitinase activity; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage, LP.02 two leaves visible; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: chitinase, putative (TAIR:AT2G43580.1); Has 1881 Blast hits to 1685 proteins in 380 species: Archae - 0; Bacteria - 391; Metazoa - 33; Fungi - 138; Plants - 1211; Viruses - 18; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT2G43590.1p  transcript_id AT2G43590.1  protein_id AT2G43590.1p  transcript_id AT2G43590.1  
At2g43600	chr2:018086592	0.0	C/18086592-18087018,18086049-18086443	AT2G43600.1  CDS  gene_syn F18O19.29  go_component endomembrane system|GO:0012505||IEA  go_process cell wall macromolecule catabolic process|GO:0016998||IEA  go_function chitinase activity|GO:0004568||IEA  go_function chitin binding|GO:0008061||IEA  go_function chitinase activity|GO:0004568||ISS  product glycoside hydrolase family 19 protein  note glycoside hydrolase family 19 protein; FUNCTIONS IN: chitin binding, chitinase activity; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, sperm cell, root; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 19 protein (TAIR:AT1G56680.1); Has 1226 Blast hits to 1219 proteins in 250 species: Archae - 0; Bacteria - 187; Metazoa - 13; Fungi - 13; Plants - 976; Viruses - 1; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT2G43600.1p  transcript_id AT2G43600.1  protein_id AT2G43600.1p  transcript_id AT2G43600.1  
At2g43610	chr2:018088734	0.0	C/18088734-18089184,18088058-18088452	AT2G43610.1  CDS  gene_syn F18O19.28  go_process cell wall macromolecule catabolic process|GO:0016998||IEA  go_function chitinase activity|GO:0004568||IEA  go_function chitin binding|GO:0008061||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_function chitinase activity|GO:0004568||ISS  product glycoside hydrolase family 19 protein  note glycoside hydrolase family 19 protein; FUNCTIONS IN: chitin binding, chitinase activity; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: chitinase, putative (TAIR:AT2G43620.1); Has 2179 Blast hits to 1930 proteins in 437 species: Archae - 0; Bacteria - 469; Metazoa - 33; Fungi - 217; Plants - 1249; Viruses - 45; Other Eukaryotes - 166 (source: NCBI BLink).  protein_id AT2G43610.1p  transcript_id AT2G43610.1  protein_id AT2G43610.1p  transcript_id AT2G43610.1  
At2g43620	chr2:018094569	0.0	C/18094569-18095025,18093954-18094348	AT2G43620.1  CDS  gene_syn F18O19.27  go_component apoplast|GO:0048046|18538804|IDA  go_function chitinase activity|GO:0004568||IEA  go_function chitin binding|GO:0008061||IEA  go_process response to salt stress|GO:0009651|11351099|IEP  go_function chitinase activity|GO:0004568||ISS  product chitinase, putative  note chitinase, putative; FUNCTIONS IN: chitin binding, chitinase activity; INVOLVED IN: response to salt stress; LOCATED IN: apoplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 19 protein (TAIR:AT2G43610.1); Has 2130 Blast hits to 1900 proteins in 431 species: Archae - 0; Bacteria - 469; Metazoa - 33; Fungi - 213; Plants - 1231; Viruses - 34; Other Eukaryotes - 150 (source: NCBI BLink).  protein_id AT2G43620.1p  transcript_id AT2G43620.1  protein_id AT2G43620.1p  transcript_id AT2G43620.1  
At2g43630	chr2:018096255	0.0	W/18096255-18096524,18096709-18096966,18097048-18097344	AT2G43630.1  CDS  gene_syn F18O19.26  go_component nucleus|GO:0005634|14617066|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, nucleus, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G59640.2); Has 48 Blast hits to 48 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 10; Fungi - 0; Plants - 32; Viruses - 2; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G43630.1p  transcript_id AT2G43630.1  protein_id AT2G43630.1p  transcript_id AT2G43630.1  
At2g43640	chr2:018098617	0.0	C/18098617-18098619,18098315-18098408,18098109-18098218,18097614-18097772	AT2G43640.1  CDS  gene_syn F18O19.25  go_component signal recognition particle, endoplasmic reticulum targeting|GO:0005786||IEA  go_component signal recognition particle|GO:0048500||IEA  go_process SRP-dependent cotranslational protein targeting to membrane|GO:0006614||IEA  go_process negative regulation of translational elongation|GO:0045900||IEA  go_function protein binding|GO:0005515||IEA  go_function 7S RNA binding|GO:0008312||IEA  go_function endoplasmic reticulum signal peptide binding|GO:0030942||IEA  go_component signal recognition particle, endoplasmic reticulum targeting|GO:0005786||ISS  go_process protein targeting|GO:0006605||ISS  go_function RNA binding|GO:0003723||ISS  product signal recognition particle 14 kDa family protein / SRP14 family protein  note signal recognition particle 14 kDa family protein / SRP14 family protein; FUNCTIONS IN: 7S RNA binding, protein binding, endoplasmic reticulum signal peptide binding, RNA binding; INVOLVED IN: negative regulation of translational elongation, protein targeting, SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: signal recognition particle, signal recognition particle, endoplasmic reticulum targeting; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Signal recognition particle, SRP14 subunit (InterPro:IPR003210), Signal recognition particle, SRP9/SRP14 subunit (InterPro:IPR009018); Has 170 Blast hits to 170 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 27; Plants - 26; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT2G43640.1p  transcript_id AT2G43640.1  protein_id AT2G43640.1p  transcript_id AT2G43640.1  
At2g43640	chr2:018098617	0.0	C/18098617-18098619,18098315-18098408,18098109-18098218,18097614-18097772	AT2G43640.2  CDS  gene_syn F18O19.25  go_component signal recognition particle, endoplasmic reticulum targeting|GO:0005786||IEA  go_component signal recognition particle|GO:0048500||IEA  go_process SRP-dependent cotranslational protein targeting to membrane|GO:0006614||IEA  go_process negative regulation of translational elongation|GO:0045900||IEA  go_function protein binding|GO:0005515||IEA  go_function 7S RNA binding|GO:0008312||IEA  go_function endoplasmic reticulum signal peptide binding|GO:0030942||IEA  go_component signal recognition particle, endoplasmic reticulum targeting|GO:0005786||ISS  go_process protein targeting|GO:0006605||ISS  go_function RNA binding|GO:0003723||ISS  product signal recognition particle 14 kDa family protein / SRP14 family protein  note signal recognition particle 14 kDa family protein / SRP14 family protein; FUNCTIONS IN: 7S RNA binding, endoplasmic reticulum signal peptide binding, protein binding, RNA binding; INVOLVED IN: negative regulation of translational elongation, protein targeting, SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: signal recognition particle, signal recognition particle, endoplasmic reticulum targeting; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Signal recognition particle, SRP14 subunit (InterPro:IPR003210), Signal recognition particle, SRP9/SRP14 subunit (InterPro:IPR009018); Has 170 Blast hits to 170 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 27; Plants - 26; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT2G43640.2p  transcript_id AT2G43640.2  protein_id AT2G43640.2p  transcript_id AT2G43640.2  
At2g43650	chr2:018099430	0.0	W/18099430-18099526,18099732-18099823,18099913-18099988,18100123-18100271,18100416-18100562,18100656-18100795,18100907-18100994,18101121-18101300,18101432-18101584,18101684-18101746,18101865-18102004,18102114-18102219,18102313-18102587,18102679-18102742,18102851-18102919,18103022-18103147	AT2G43650.1  CDS  gene_syn EMB2777, EMBRYO DEFECTIVE 2777, F18O19.24  gene EMB2777  go_function molecular_function|GO:0003674||ND  product EMB2777 (EMBRYO DEFECTIVE 2777)  note EMBRYO DEFECTIVE 2777 (EMB2777); FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Sas10/Utp3/C1D (InterPro:IPR007146); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28230.2); Has 13418 Blast hits to 9203 proteins in 531 species: Archae - 65; Bacteria - 1866; Metazoa - 4566; Fungi - 1730; Plants - 522; Viruses - 165; Other Eukaryotes - 4504 (source: NCBI BLink).  protein_id AT2G43650.1p  transcript_id AT2G43650.1  protein_id AT2G43650.1p  transcript_id AT2G43650.1  
At2g43660	chr2:018104491	0.0	C/18104491-18104545,18104291-18104322,18103945-18104191,18103818-18103852	AT2G43660.1  CDS  gene_syn F18O19.23  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycosyl hydrolase family protein 17  note glycosyl hydrolase family protein 17; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family protein 17 (TAIR:AT2G43670.1); Has 660 Blast hits to 624 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 660; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G43660.1p  transcript_id AT2G43660.1  protein_id AT2G43660.1p  transcript_id AT2G43660.1  
At2g43660	chr2:018104491	0.0	C/18104491-18104545,18104291-18104325,18103945-18104191,18103818-18103852	AT2G43660.2  CDS  gene_syn F18O19.23  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycosyl hydrolase family protein 17  note glycosyl hydrolase family protein 17; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family protein 17 (TAIR:AT2G43670.1); Has 660 Blast hits to 624 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 660; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G43660.2p  transcript_id AT2G43660.2  protein_id AT2G43660.2p  transcript_id AT2G43660.2  
At2g43670	chr2:018105145	0.0	W/18105145-18105199,18105362-18105393,18105499-18105742,18105840-18105874	AT2G43670.1  CDS  gene_syn F18O19.22  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycosyl hydrolase family protein 17  note glycosyl hydrolase family protein 17; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, hypocotyl, pedicel, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78520.1); Has 763 Blast hits to 727 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 757; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G43670.1p  transcript_id AT2G43670.1  protein_id AT2G43670.1p  transcript_id AT2G43670.1  
At2g43680	chr2:018109302	0.0	W/18109302-18109376,18109480-18110415,18110509-18110838,18110919-18111587	AT2G43680.1  CDS  gene_syn F18O19.21, IQD14  gene IQD14  go_component plasma membrane|GO:0005886|17317660|IDA  go_function calmodulin binding|GO:0005516||ISS  product IQD14; calmodulin binding  note IQD14; FUNCTIONS IN: calmodulin binding; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQD13 (IQ-domain 13); calmodulin binding (TAIR:AT3G59690.1); Has 100535 Blast hits to 47362 proteins in 1567 species: Archae - 188; Bacteria - 17530; Metazoa - 38287; Fungi - 15640; Plants - 10874; Viruses - 3365; Other Eukaryotes - 14651 (source: NCBI BLink).  protein_id AT2G43680.1p  transcript_id AT2G43680.1  protein_id AT2G43680.1p  transcript_id AT2G43680.1  
At2g43680	chr2:018109302	0.0	W/18109302-18109376,18109483-18110415,18110509-18110838,18110919-18111587	AT2G43680.2  CDS  gene_syn F18O19.21, IQD14  gene IQD14  go_component plasma membrane|GO:0005886|17317660|IDA  go_function calmodulin binding|GO:0005516||ISS  product IQD14; calmodulin binding  note IQD14; FUNCTIONS IN: calmodulin binding; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQD13 (IQ-domain 13); calmodulin binding (TAIR:AT3G59690.1); Has 100644 Blast hits to 47343 proteins in 1568 species: Archae - 188; Bacteria - 17620; Metazoa - 38307; Fungi - 15621; Plants - 10847; Viruses - 3412; Other Eukaryotes - 14649 (source: NCBI BLink).  protein_id AT2G43680.2p  transcript_id AT2G43680.2  protein_id AT2G43680.2p  transcript_id AT2G43680.2  
At2g43680	chr2:018109302	0.0	W/18109302-18109376,18109483-18110415,18110509-18110838,18110919-18111587	AT2G43680.3  CDS  gene_syn F18O19.21, IQD14  gene IQD14  go_function calmodulin binding|GO:0005516||ISS  product IQD14; calmodulin binding  note IQD14; FUNCTIONS IN: calmodulin binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQD13 (IQ-domain 13); calmodulin binding (TAIR:AT3G59690.1).  protein_id AT2G43680.3p  transcript_id AT2G43680.3  protein_id AT2G43680.3p  transcript_id AT2G43680.3  
At2g43690	chr2:018112589	0.0	W/18112589-18114583	AT2G43690.1  CDS  gene_syn F18O19.20  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product lectin protein kinase, putative  note lectin protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin protein kinase family protein (TAIR:AT2G43700.1); Has 89074 Blast hits to 88088 proteins in 3452 species: Archae - 61; Bacteria - 7837; Metazoa - 38608; Fungi - 7190; Plants - 19707; Viruses - 383; Other Eukaryotes - 15288 (source: NCBI BLink).  protein_id AT2G43690.1p  transcript_id AT2G43690.1  protein_id AT2G43690.1p  transcript_id AT2G43690.1  
At2g43700	chr2:018116523	0.0	W/18116523-18118499	AT2G43700.1  CDS  gene_syn F18O19.19  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product lectin protein kinase family protein  note lectin protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin protein kinase, putative (TAIR:AT2G43690.1); Has 88806 Blast hits to 87667 proteins in 3517 species: Archae - 62; Bacteria - 7677; Metazoa - 38748; Fungi - 7013; Plants - 19812; Viruses - 384; Other Eukaryotes - 15110 (source: NCBI BLink).  protein_id AT2G43700.1p  transcript_id AT2G43700.1  protein_id AT2G43700.1p  transcript_id AT2G43700.1  
At2g43710	chr2:018120107	0.0	W/18120107-18120246,18121354-18121858,18121935-18122495	AT2G43710.1  CDS  gene_syn F18O19.18, FAB2, FATTY ACID BIOSYNTHESIS 2, SSI2  gene SSI2  function Encodes a stearoyl-ACP desaturase, involved in fatty acid desaturation. The ssi2 mutants have increased 18:0 and reduced 18:1 fatty acids. Exogenous application of glycerol to wild type plants mimics the ssi2 mutant phenotype. The altered 18:1 fatty acid content in the ssi2 mutants has an impact on SA- and JA-mediated defense signaling.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process fatty acid metabolic process|GO:0006631|11481500|IMP  go_process unsaturated fatty acid biosynthetic process|GO:0006636|16306139|TAS  go_process defense response|GO:0006952|11481500|IMP  go_process lipid biosynthetic process|GO:0008610|12232421|IMP  go_process jasmonic acid biosynthetic process|GO:0009695|11481500|TAS  go_process salicylic acid mediated signaling pathway|GO:0009863|16306139|TAS  go_process jasmonic acid mediated signaling pathway|GO:0009867|16306139|TAS  go_process defense response to bacterium|GO:0042742|15828688|IMP  go_process defense response to virus|GO:0051607|17431038|IEP  go_process defense response to virus|GO:0051607|17431038|IMP  go_function stearoyl-CoA 9-desaturase activity|GO:0004768||IMP  go_function acyl-[acyl-carrier-protein] desaturase activity|GO:0045300|11481500|IMP  go_function acyl-[acyl-carrier-protein] desaturase activity|GO:0045300|12232421|IMP  product SSI2; acyl-[acyl-carrier-protein] desaturase/ stearoyl-CoA 9-desaturase  note SSI2; FUNCTIONS IN: acyl-[acyl-carrier-protein] desaturase activity, stearoyl-CoA 9-desaturase activity; INVOLVED IN: in 9 processes; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribonucleotide reductase-related (InterPro:IPR012348), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078), Fatty acid desaturase, type 2 (InterPro:IPR005067), Stearoyl-ACP desaturase, conserved site (InterPro:IPR005803); BEST Arabidopsis thaliana protein match is: acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative (TAIR:AT3G02630.1); Has 579 Blast hits to 576 proteins in 129 species: Archae - 0; Bacteria - 206; Metazoa - 2; Fungi - 0; Plants - 317; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT2G43710.1p  transcript_id AT2G43710.1  protein_id AT2G43710.1p  transcript_id AT2G43710.1  
At2g43710	chr2:018120107	0.0	W/18120107-18120250,18121358-18121858,18121935-18122495	AT2G43710.2  CDS  gene_syn F18O19.18, FAB2, FATTY ACID BIOSYNTHESIS 2, SSI2  gene SSI2  function Encodes a stearoyl-ACP desaturase, involved in fatty acid desaturation. The ssi2 mutants have increased 18:0 and reduced 18:1 fatty acids. Exogenous application of glycerol to wild type plants mimics the ssi2 mutant phenotype. The altered 18:1 fatty acid content in the ssi2 mutants has an impact on SA- and JA-mediated defense signaling.  go_component chloroplast|GO:0009507|18431481|IDA  go_process fatty acid metabolic process|GO:0006631|11481500|IMP  go_process unsaturated fatty acid biosynthetic process|GO:0006636|16306139|TAS  go_process defense response|GO:0006952|11481500|IMP  go_process lipid biosynthetic process|GO:0008610|12232421|IMP  go_process jasmonic acid biosynthetic process|GO:0009695|11481500|TAS  go_process salicylic acid mediated signaling pathway|GO:0009863|16306139|TAS  go_process jasmonic acid mediated signaling pathway|GO:0009867|16306139|TAS  go_process defense response to bacterium|GO:0042742|15828688|IMP  go_process defense response to virus|GO:0051607|17431038|IEP  go_process defense response to virus|GO:0051607|17431038|IMP  go_function stearoyl-CoA 9-desaturase activity|GO:0004768||IMP  go_function acyl-[acyl-carrier-protein] desaturase activity|GO:0045300|11481500|IMP  go_function acyl-[acyl-carrier-protein] desaturase activity|GO:0045300|12232421|IMP  product SSI2; acyl-[acyl-carrier-protein] desaturase/ stearoyl-CoA 9-desaturase  note SSI2; FUNCTIONS IN: acyl-[acyl-carrier-protein] desaturase activity, stearoyl-CoA 9-desaturase activity; INVOLVED IN: in 9 processes; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribonucleotide reductase-related (InterPro:IPR012348), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078), Fatty acid desaturase, type 2 (InterPro:IPR005067), Stearoyl-ACP desaturase, conserved site (InterPro:IPR005803); BEST Arabidopsis thaliana protein match is: acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative (TAIR:AT3G02630.1); Has 579 Blast hits to 576 proteins in 129 species: Archae - 0; Bacteria - 206; Metazoa - 2; Fungi - 0; Plants - 317; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT2G43710.2p  transcript_id AT2G43710.2  protein_id AT2G43710.2p  transcript_id AT2G43710.2  
At2g43720	chr2:018123293	0.0	W/18123293-18123415,18123687-18123824,18124117-18124299	AT2G43720.1  CDS  gene_syn F18O19.17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF842, eukaryotic (InterPro:IPR008560); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31725.1); Has 203 Blast hits to 203 proteins in 64 species: Archae - 0; Bacteria - 0; Metazoa - 158; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT2G43720.1p  transcript_id AT2G43720.1  protein_id AT2G43720.1p  transcript_id AT2G43720.1  
At2g43730	chr2:018125451	0.0	C/18125451-18125669,18124821-18125276	AT2G43730.1  CDS  gene_syn F18O19.16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product lectin-related  note lectin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G43740.2); Has 93 Blast hits to 87 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G43730.1p  transcript_id AT2G43730.1  protein_id AT2G43730.1p  transcript_id AT2G43730.1  
At2g43740	chr2:018127630	0.0	C/18127630-18127884,18126828-18127445	AT2G43740.2  CDS  gene_syn F18O19.15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: lectin-related (TAIR:AT2G43730.1); Has 22 Blast hits to 22 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G43740.2p  transcript_id AT2G43740.2  protein_id AT2G43740.2p  transcript_id AT2G43740.2  
At2g43740	chr2:018127630	0.0	C/18127630-18127884,18126828-18127502	AT2G43740.1  CDS  gene_syn F18O19.15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: lectin-related (TAIR:AT2G43730.1); Has 18 Blast hits to 18 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G43740.1p  transcript_id AT2G43740.1  protein_id AT2G43740.1p  transcript_id AT2G43740.1  
At2g43745	chr2:018128978	0.0	C/18128978-18129217,18128859-18128891	AT2G43745.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: lectin-related (TAIR:AT2G43730.1); Has 20 Blast hits to 20 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G43745.1p  transcript_id AT2G43745.1  protein_id AT2G43745.1p  transcript_id AT2G43745.1  
At2g43750	chr2:018132080	0.0	C/18132080-18132322,18131784-18131893,18131639-18131696,18131272-18131535,18130864-18131001,18130680-18130731,18130515-18130594,18130348-18130407,18130139-18130219,18129604-18129696	AT2G43750.1  CDS  gene_syn ACS1, ARABIDOPSIS CYSTEINE SYNTHASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ATCS-B, CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, CPACS1, CSASE B, CYSTEINE SYNTHASE, F18O19.14, O-ACETYLSERINE (THIOL) LYASE B, OASB  gene OASB  function Arabidopsis thaliana O-acetylserine (thiol) lyase (OAS-TL) isoform oasB, the key enzyme for fixation of inorganic sulfide. It catalyzes the formation of cysteine from O-acetylserine and inorganic sulfide.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component plastid|GO:0009536|10940562|TAS  go_process cysteine biosynthetic process|GO:0019344|10940562|IDA  go_function cysteine synthase activity|GO:0004124|10940562|IDA  go_function cysteine synthase activity|GO:0004124||ISS  product OASB (O-ACETYLSERINE (THIOL) LYASE B); cysteine synthase  note O-ACETYLSERINE (THIOL) LYASE B (OASB); FUNCTIONS IN: cysteine synthase activity; INVOLVED IN: response to cadmium ion, cysteine biosynthetic process; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (InterPro:IPR001216), Cysteine synthase A (InterPro:IPR005859), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Cysteine synthase K/M (InterPro:IPR005856); BEST Arabidopsis thaliana protein match is: OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C); ATP binding / cysteine synthase (TAIR:AT3G59760.3); Has 14788 Blast hits to 14772 proteins in 1508 species: Archae - 243; Bacteria - 8711; Metazoa - 414; Fungi - 431; Plants - 383; Viruses - 0; Other Eukaryotes - 4606 (source: NCBI BLink).  protein_id AT2G43750.1p  transcript_id AT2G43750.1  protein_id AT2G43750.1p  transcript_id AT2G43750.1  
At2g43760	chr2:018133276	0.0	W/18133276-18133872	AT2G43760.1  CDS  gene_syn F18O19.13  go_process Mo-molybdopterin cofactor biosynthetic process|GO:0006777||IEA  go_component cellular_component|GO:0005575||ND  go_process Mo-molybdopterin cofactor biosynthetic process|GO:0006777||ISS  go_function molecular_function|GO:0003674||ND  product molybdopterin biosynthesis MoaE family protein  note molybdopterin biosynthesis MoaE family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: Mo-molybdopterin cofactor biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molybdopterin biosynthesis MoaE (InterPro:IPR003448); Has 3000 Blast hits to 3000 proteins in 933 species: Archae - 109; Bacteria - 1683; Metazoa - 112; Fungi - 47; Plants - 25; Viruses - 0; Other Eukaryotes - 1024 (source: NCBI BLink).  protein_id AT2G43760.1p  transcript_id AT2G43760.1  protein_id AT2G43760.1p  transcript_id AT2G43760.1  
At2g43760	chr2:018133276	0.0	W/18133276-18133872	AT2G43760.2  CDS  gene_syn F18O19.13  go_process Mo-molybdopterin cofactor biosynthetic process|GO:0006777||IEA  go_component cellular_component|GO:0005575||ND  go_process Mo-molybdopterin cofactor biosynthetic process|GO:0006777||ISS  go_function molecular_function|GO:0003674||ND  product molybdopterin biosynthesis MoaE family protein  note molybdopterin biosynthesis MoaE family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: Mo-molybdopterin cofactor biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molybdopterin biosynthesis MoaE (InterPro:IPR003448); Has 3000 Blast hits to 3000 proteins in 933 species: Archae - 109; Bacteria - 1683; Metazoa - 112; Fungi - 47; Plants - 25; Viruses - 0; Other Eukaryotes - 1024 (source: NCBI BLink).  protein_id AT2G43760.2p  transcript_id AT2G43760.2  protein_id AT2G43760.2p  transcript_id AT2G43760.2  
At2g43760	chr2:018133276	0.0	W/18133276-18133872	AT2G43760.3  CDS  gene_syn F18O19.13  go_process Mo-molybdopterin cofactor biosynthetic process|GO:0006777||IEA  go_component cellular_component|GO:0005575||ND  go_process Mo-molybdopterin cofactor biosynthetic process|GO:0006777||ISS  go_function molecular_function|GO:0003674||ND  product molybdopterin biosynthesis MoaE family protein  note molybdopterin biosynthesis MoaE family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: Mo-molybdopterin cofactor biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molybdopterin biosynthesis MoaE (InterPro:IPR003448); Has 3000 Blast hits to 3000 proteins in 933 species: Archae - 109; Bacteria - 1683; Metazoa - 112; Fungi - 47; Plants - 25; Viruses - 0; Other Eukaryotes - 1024 (source: NCBI BLink).  protein_id AT2G43760.3p  transcript_id AT2G43760.3  protein_id AT2G43760.3p  transcript_id AT2G43760.3  
At2g43770	chr2:018134272	0.0	C/18134272-18135303	AT2G43770.1  CDS  gene_syn F18O19.12  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G49660.1); Has 76665 Blast hits to 29470 proteins in 693 species: Archae - 72; Bacteria - 7530; Metazoa - 35994; Fungi - 14726; Plants - 7106; Viruses - 6; Other Eukaryotes - 11231 (source: NCBI BLink).  protein_id AT2G43770.1p  transcript_id AT2G43770.1  protein_id AT2G43770.1p  transcript_id AT2G43770.1  
At2g43780	chr2:018136444	0.0	C/18136444-18136647	AT2G43780.1  CDS  gene_syn F18O19.11  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 21 Blast hits to 21 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G43780.1p  transcript_id AT2G43780.1  protein_id AT2G43780.1p  transcript_id AT2G43780.1  
At2g43780	chr2:018136444	0.0	C/18136444-18136647	AT2G43780.2  CDS  gene_syn F18O19.11  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages.  protein_id AT2G43780.2p  transcript_id AT2G43780.2  protein_id AT2G43780.2p  transcript_id AT2G43780.2  
At2g43790	chr2:018138477	0.0	W/18138477-18138709,18138931-18139060,18139510-18139647,18139739-18140071,18140152-18140332,18140521-18140693	AT2G43790.1  CDS  gene_syn ARABIDOPSIS THALIANA MAP KINASE 6, ATMPK6, F18O19.10, MAP KINASE 6, MAPK6, MPK6  gene ATMPK6  function Encodes a MAP kinase induced by pathogens, ethylene biosynthesis, oxidative stress and osmotic stress.Also involved in ovule development. Homozygous mutants in a MPK3 heterozygous background are female sterile due to defects in integument development.  go_component cellular_component|GO:0005575||ND  go_process response to reactive oxygen species|GO:0000302|11577197|IEP  go_process response to stress|GO:0006950|12119167|TAS  go_process response to osmotic stress|GO:0006970|12220631|IDA  go_process response to oxidative stress|GO:0006979|10717008|IEP  go_process signal transduction|GO:0007165|12119167|IC  go_process response to cold|GO:0009409|15225555|IDA  go_process response to salt stress|GO:0009651|15225555|IGI  go_process response to ethylene stimulus|GO:0009723|12628921|IDA  go_process response to abscisic acid stimulus|GO:0009737|18248592|IEP  go_process induced systemic resistance, jasmonic acid mediated signaling pathway|GO:0009864|17369371|IMP  go_process camalexin biosynthetic process|GO:0010120|18378893|IMP  go_process stomatal complex development|GO:0010374|17259259|IGI  go_process stomatal complex patterning|GO:0010375|17259259|IGI  go_process phosphorylation|GO:0016310|10713056|IDA  go_process response to hydrogen peroxide|GO:0042542|17933903|IDA  go_process defense response to bacterium|GO:0042742|11875555|IEP  go_process ovule development|GO:0048481|18364464|IGI  go_process priming of cellular response to stress|GO:0080136|19318610|IMP  go_function MAP kinase activity|GO:0004707|10713056|IDA  go_function MAP kinase activity|GO:0004707|12119167|ISS  go_function kinase activity|GO:0016301||ISS  product ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6); MAP kinase/ kinase  note ARABIDOPSIS THALIANA MAP KINASE 6 (ATMPK6); FUNCTIONS IN: MAP kinase activity, kinase activity; INVOLVED IN: in 18 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), JNK MAP kinase (InterPro:IPR008351), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3); MAP kinase/ kinase/ protein binding / protein kinase (TAIR:AT3G45640.1); Has 91606 Blast hits to 90410 proteins in 3244 species: Archae - 41; Bacteria - 7276; Metazoa - 40457; Fungi - 8290; Plants - 17436; Viruses - 529; Other Eukaryotes - 17577 (source: NCBI BLink).  protein_id AT2G43790.1p  transcript_id AT2G43790.1  protein_id AT2G43790.1p  transcript_id AT2G43790.1  
At2g43795	chr2:018141830	0.0	C/18141830-18141931,18141601-18141736,18141440-18141506,18141135-18141342	AT2G43795.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G59800.1); Has 46 Blast hits to 46 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 6; Plants - 26; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT2G43795.2p  transcript_id AT2G43795.2  protein_id AT2G43795.2p  transcript_id AT2G43795.2  
At2g43795	chr2:018141830	0.0	C/18141830-18141931,18141601-18141736,18141440-18141510,18141193-18141342	AT2G43795.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G59800.1); Has 12209 Blast hits to 6413 proteins in 334 species: Archae - 2; Bacteria - 280; Metazoa - 6593; Fungi - 965; Plants - 639; Viruses - 40; Other Eukaryotes - 3690 (source: NCBI BLink).  protein_id AT2G43795.1p  transcript_id AT2G43795.1  protein_id AT2G43795.1p  transcript_id AT2G43795.1  
At2g43800	chr2:018145721	0.0	W/18145721-18147144,18147229-18147416,18147568-18147821,18147903-18148721	AT2G43800.1  CDS  gene_syn F18O19.9  go_component plasma membrane|GO:0005886|17317660|IDA  go_process cellular component organization|GO:0016043||IEA  go_process actin cytoskeleton organization|GO:0030036||IEA  go_function actin binding|GO:0003779|12417149|ISS  go_function actin binding|GO:0003779|15256004|ISS  go_function actin binding|GO:0003779||ISS  product formin homology 2 domain-containing protein / FH2 domain-containing protein  note formin homology 2 domain-containing protein / FH2 domain-containing protein; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding FH2 and DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: AFH1 (FORMIN HOMOLOGY 1); actin binding / actin filament binding / protein binding (TAIR:AT3G25500.1); Has 21967 Blast hits to 12759 proteins in 704 species: Archae - 37; Bacteria - 1667; Metazoa - 8243; Fungi - 3105; Plants - 5126; Viruses - 998; Other Eukaryotes - 2791 (source: NCBI BLink).  protein_id AT2G43800.1p  transcript_id AT2G43800.1  protein_id AT2G43800.1p  transcript_id AT2G43800.1  
At2g43810	chr2:018149725	0.0	W/18149725-18149839,18150624-18150737,18150833-18150879	AT2G43810.1  CDS  gene_syn F18O19.8  go_component nucleus|GO:0005634||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_function molecular_function|GO:0003674||ND  product small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative  note small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative; FUNCTIONS IN: molecular_function unknown; LOCATED IN: small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative (TAIR:AT3G59810.1); Has 867 Blast hits to 867 proteins in 206 species: Archae - 237; Bacteria - 0; Metazoa - 247; Fungi - 181; Plants - 68; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).  protein_id AT2G43810.1p  transcript_id AT2G43810.1  protein_id AT2G43810.1p  transcript_id AT2G43810.1  
At2g43810	chr2:018149725	0.0	W/18149725-18149839,18150624-18150737,18150833-18150879	AT2G43810.2  CDS  gene_syn F18O19.8  go_component nucleus|GO:0005634||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_function molecular_function|GO:0003674||ND  product small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative  note small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative; FUNCTIONS IN: molecular_function unknown; LOCATED IN: small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative (TAIR:AT3G59810.1); Has 867 Blast hits to 867 proteins in 206 species: Archae - 237; Bacteria - 0; Metazoa - 247; Fungi - 181; Plants - 68; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).  protein_id AT2G43810.2p  transcript_id AT2G43810.2  protein_id AT2G43810.2p  transcript_id AT2G43810.2  
At2g43820	chr2:018152279	0.0	W/18152279-18152902,18152990-18153715	AT2G43820.1  CDS  gene_syn F18O19.7, GT, UDP-GLUCOSYLTRANSFERASE 74F2, UGT74F2  gene UGT74F2  function Induced by Salicylic acid, virus, fungus and bacteria.Involved in the tryptophan synthesis pathway. Independent of NPR1 for their induction by salicylic acid. UGT74F2 shows a weak ability to catalyze the formation of the p-aminobenzoate-glucose ester in vitro. But, UGT75B1 appears to be the dominant pABA acylglucosyltransferase in vivo based on assays in leaves, flowers, and siliques.  go_component cellular_component|GO:0005575||ND  go_process para-aminobenzoic acid metabolic process|GO:0046482|18385129|IDA  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  go_function UDP-glucosyltransferase activity|GO:0035251|16307367|TAS  go_function UDP-glucose:4-aminobenzoate acylglucosyltransferase activity|GO:0080002|18385129|IDA  product UGT74F2 (UDP-GLUCOSYLTRANSFERASE 74F2); UDP-glucose:4-aminobenzoate acylglucosyltransferase/ UDP-glucosyltransferase/ UDP-glycosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note UDP-GLUCOSYLTRANSFERASE 74F2 (UGT74F2); FUNCTIONS IN: transferase activity, transferring hexosyl groups, UDP-glucose:4-aminobenzoate acylglucosyltransferase activity, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: para-aminobenzoic acid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT2G43840.1); Has 5210 Blast hits to 5172 proteins in 364 species: Archae - 0; Bacteria - 293; Metazoa - 2038; Fungi - 14; Plants - 2711; Viruses - 120; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT2G43820.1p  transcript_id AT2G43820.1  protein_id AT2G43820.1p  transcript_id AT2G43820.1  
At2g43830	chr2:018154542	0.0	C/18154542-18156488	AT2G43830.1  pseudogenic_transcript  pseudo  gene_syn F18O19.6  note pseudogene, NPK1-related protein kinase 3, identical to NPK1-related protein kinase 3 (GI:2342427) (Arabidopsis thaliana);; blastp match of 91% identity and 2.1e-09 P-value to GP|456309|dbj|BAA05648.1||D26601 protein kinase {Nicotiana tabacum}  
At2g43840	chr2:018157681	0.0	W/18157681-18158304,18158441-18159166	AT2G43840.1  CDS  gene_syn F18O19.5, UDP-GLYCOSYLTRANSFERASE 74 F1, UGT74F1  gene UGT74F1  function UGT74F1 shows a weak ability to catalyze the formation of the p-aminobenzoate-glucose ester in vitro. But, UGT75B1 appears to be the dominant pABA acylglucosyltransferase in vivo based on assays in leaves, flowers, and siliques.  go_component cellular_component|GO:0005575||ND  go_process para-aminobenzoic acid metabolic process|GO:0046482|18385129|IDA  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  go_function UDP-glucose:4-aminobenzoate acylglucosyltransferase activity|GO:0080002|18385129|IDA  go_function quercetin 7-O-glucosyltransferase activity|GO:0080044|15352060|IDA  go_function quercetin 4 -O-glucosyltransferase activity|GO:0080046|15352060|IDA  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-GLYCOSYLTRANSFERASE 74 F1 (UGT74F1); FUNCTIONS IN: in 6 functions; INVOLVED IN: para-aminobenzoic acid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT74F2 (UDP-GLUCOSYLTRANSFERASE 74F2); UDP-glucose:4-aminobenzoate acylglucosyltransferase/ UDP-glucosyltransferase/ UDP-glycosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT2G43820.1); Has 5100 Blast hits to 5063 proteins in 359 species: Archae - 0; Bacteria - 262; Metazoa - 1981; Fungi - 10; Plants - 2705; Viruses - 110; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT2G43840.1p  transcript_id AT2G43840.1  protein_id AT2G43840.1p  transcript_id AT2G43840.1  
At2g43840	chr2:018157681	0.0	W/18157681-18158308,18158445-18159166	AT2G43840.2  CDS  gene_syn F18O19.5, UDP-GLYCOSYLTRANSFERASE 74 F1, UGT74F1  gene UGT74F1  function UGT74F1 shows a weak ability to catalyze the formation of the p-aminobenzoate-glucose ester in vitro. But, UGT75B1 appears to be the dominant pABA acylglucosyltransferase in vivo based on assays in leaves, flowers, and siliques.  go_component cellular_component|GO:0005575||ND  go_process para-aminobenzoic acid metabolic process|GO:0046482|18385129|IDA  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  go_function UDP-glucose:4-aminobenzoate acylglucosyltransferase activity|GO:0080002|18385129|IDA  go_function quercetin 7-O-glucosyltransferase activity|GO:0080044|15352060|IDA  go_function quercetin 4 -O-glucosyltransferase activity|GO:0080046|15352060|IDA  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-GLYCOSYLTRANSFERASE 74 F1 (UGT74F1); FUNCTIONS IN: in 6 functions; INVOLVED IN: para-aminobenzoic acid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT74F2 (UDP-GLUCOSYLTRANSFERASE 74F2); UDP-glucose:4-aminobenzoate acylglucosyltransferase/ UDP-glucosyltransferase/ UDP-glycosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT2G43820.1); Has 5105 Blast hits to 5068 proteins in 359 species: Archae - 0; Bacteria - 262; Metazoa - 1984; Fungi - 10; Plants - 2707; Viruses - 110; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT2G43840.2p  transcript_id AT2G43840.2  protein_id AT2G43840.2p  transcript_id AT2G43840.2  
At2g43850	chr2:018161547	0.0	C/18161547-18161984,18161386-18161460,18161191-18161299,18161007-18161088,18160745-18160865,18160588-18160667,18160438-18160500,18160206-18160327,18160032-18160117,18159833-18159957,18159604-18159735,18159517-18159523	AT2G43850.2  CDS  gene_syn F18O19.4  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process regulation of signal transduction|GO:0009966||IEA  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  product ankyrin protein kinase, putative (APK1)  note ankyrin protein kinase, putative (APK1); FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: regulation of signal transduction, protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Integrin-linked protein kinase (InterPro:IPR016253), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin protein kinase, putative (TAIR:AT3G59830.1); Has 116680 Blast hits to 94686 proteins in 3225 species: Archae - 88; Bacteria - 8538; Metazoa - 56811; Fungi - 8452; Plants - 18573; Viruses - 613; Other Eukaryotes - 23605 (source: NCBI BLink).  protein_id AT2G43850.2p  transcript_id AT2G43850.2  protein_id AT2G43850.2p  transcript_id AT2G43850.2  
At2g43850	chr2:018161547	0.0	C/18161547-18161984,18161386-18161460,18161195-18161299,18161007-18161092,18160745-18160865,18160588-18160667,18160438-18160500,18160206-18160327,18160032-18160117,18159833-18159957,18159604-18159735,18159517-18159523	AT2G43850.1  CDS  gene_syn F18O19.4  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process regulation of signal transduction|GO:0009966||IEA  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  product ankyrin protein kinase, putative (APK1)  note ankyrin protein kinase, putative (APK1); FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: regulation of signal transduction, protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Integrin-linked protein kinase (InterPro:IPR016253), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin protein kinase, putative (TAIR:AT3G59830.1); Has 117033 Blast hits to 94846 proteins in 3265 species: Archae - 88; Bacteria - 8550; Metazoa - 57084; Fungi - 8468; Plants - 18579; Viruses - 613; Other Eukaryotes - 23651 (source: NCBI BLink).  protein_id AT2G43850.1p  transcript_id AT2G43850.1  protein_id AT2G43850.1p  transcript_id AT2G43850.1  
At2g43860	chr2:018163967	0.0	C/18163967-18164428,18163598-18163887,18163275-18163500,18162945-18163184	AT2G43860.1  CDS  gene_syn F18O19.3  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product polygalacturonase, putative / pectinase, putative  note polygalacturonase, putative / pectinase, putative; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: polygalacturonase, putative / pectinase, putative (TAIR:AT3G59850.1); Has 2408 Blast hits to 2401 proteins in 306 species: Archae - 4; Bacteria - 449; Metazoa - 8; Fungi - 990; Plants - 883; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT2G43860.1p  transcript_id AT2G43860.1  protein_id AT2G43860.1p  transcript_id AT2G43860.1  
At2g43865	chr2:018165573	0.0	C/18165573-18165878	AT2G43865.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT2G43865.1p  transcript_id AT2G43865.1  protein_id AT2G43865.1p  transcript_id AT2G43865.1  
At2g43870	chr2:018167842	0.0	C/18167842-18168264,18167252-18167541,18166908-18167133,18166615-18166830	AT2G43870.1  CDS  gene_syn F18O19.2  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product polygalacturonase, putative / pectinase, putative  note polygalacturonase, putative / pectinase, putative; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, sepal, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: polygalacturonase, putative / pectinase, putative (TAIR:AT3G59850.1); Has 2414 Blast hits to 2406 proteins in 300 species: Archae - 2; Bacteria - 458; Metazoa - 8; Fungi - 983; Plants - 889; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT2G43870.1p  transcript_id AT2G43870.1  protein_id AT2G43870.1p  transcript_id AT2G43870.1  
At2g43871	chr2:018168704	0.0	W/18168704-18168829	AT2G43871.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G43871.1p  transcript_id AT2G43871.1  protein_id AT2G43871.1p  transcript_id AT2G43871.1  
At2g43880	chr2:018173034	0.0	W/18173034-18173480,18173578-18173867,18173951-18174179,18174264-18174482	AT2G43880.1  CDS  gene_syn F6E13.1  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product polygalacturonase, putative / pectinase, putative  note polygalacturonase, putative / pectinase, putative; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: root, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: polygalacturonase, putative / pectinase, putative (TAIR:AT2G43890.1); Has 2471 Blast hits to 2463 proteins in 327 species: Archae - 2; Bacteria - 522; Metazoa - 8; Fungi - 984; Plants - 879; Viruses - 2; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT2G43880.1p  transcript_id AT2G43880.1  protein_id AT2G43880.1p  transcript_id AT2G43880.1  
At2g43890	chr2:018176924	0.0	W/18176924-18177364,18177475-18177764,18177854-18178082,18178172-18178390	AT2G43890.1  CDS  gene_syn F6E13.2  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product polygalacturonase, putative / pectinase, putative  note polygalacturonase, putative / pectinase, putative; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: polygalacturonase, putative / pectinase, putative (TAIR:AT1G05650.1); Has 2385 Blast hits to 2375 proteins in 303 species: Archae - 2; Bacteria - 434; Metazoa - 8; Fungi - 986; Plants - 882; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT2G43890.1p  transcript_id AT2G43890.1  protein_id AT2G43890.1p  transcript_id AT2G43890.1  
At2g43900	chr2:018182992	0.0	C/18182992-18183823,18182643-18182895,18181737-18182544,18181501-18181628,18181320-18181404,18180952-18181117,18180826-18180866,18180450-18180717,18180233-18180356,18179782-18180142,18178801-18179685	AT2G43900.1  CDS  gene_syn F6E13.3  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437||IEA  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function inositol-polyphosphate 5-phosphatase activity|GO:0004445||ISS  product inositol or phosphatidylinositol phosphatase/ inositol-polyphosphate 5-phosphatase  note inositol or phosphatidylinositol phosphatase/ inositol-polyphosphate 5-phosphatase; FUNCTIONS IN: inositol-polyphosphate 5-phosphatase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: sperm cell, male gametophyte, flower, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), WD40 repeat-like (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: 5PTASE13; inositol or phosphatidylinositol phosphatase (TAIR:AT1G05630.2); Has 119228 Blast hits to 28881 proteins in 1158 species: Archae - 293; Bacteria - 30547; Metazoa - 33368; Fungi - 7677; Plants - 3311; Viruses - 1522; Other Eukaryotes - 42510 (source: NCBI BLink).  protein_id AT2G43900.1p  transcript_id AT2G43900.1  protein_id AT2G43900.1p  transcript_id AT2G43900.1  
At2g43910	chr2:018185792	0.0	C/18185792-18185860,18185607-18185707,18185350-18185449,18185209-18185255,18185023-18185096,18184596-18184696	AT2G43910.3  CDS  gene_syn F6E13.4  go_process metabolic process|GO:0008152||IEA  go_function thiopurine S-methyltransferase activity|GO:0008119||IEA  go_function methyltransferase activity|GO:0008168||ISS  product thiol methyltransferase, putative  note thiol methyltransferase, putative; FUNCTIONS IN: methyltransferase activity, thiopurine S-methyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Thiopurine S-methyltransferase (InterPro:IPR008854); BEST Arabidopsis thaliana protein match is: thiol methyltransferase, putative (TAIR:AT2G43920.3).  protein_id AT2G43910.3p  transcript_id AT2G43910.3  protein_id AT2G43910.3p  transcript_id AT2G43910.3  
At2g43910	chr2:018186852	0.0	C/18186852-18186951,18186410-18186540,18185792-18185878,18185607-18185707,18185350-18185449,18185209-18185255,18185018-18185096,18184658-18184696	AT2G43910.1  CDS  gene_syn F6E13.4  go_component plasma membrane|GO:0005886|17644812|IDA  go_process metabolic process|GO:0008152||IEA  go_function thiopurine S-methyltransferase activity|GO:0008119||IEA  go_function methyltransferase activity|GO:0008168||ISS  product thiol methyltransferase, putative  note thiol methyltransferase, putative; FUNCTIONS IN: methyltransferase activity, thiopurine S-methyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: guard cell, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Thiopurine S-methyltransferase (InterPro:IPR008854); BEST Arabidopsis thaliana protein match is: thiol methyltransferase, putative (TAIR:AT2G43920.1); Has 899 Blast hits to 897 proteins in 347 species: Archae - 18; Bacteria - 617; Metazoa - 4; Fungi - 67; Plants - 42; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).  protein_id AT2G43910.1p  transcript_id AT2G43910.1  protein_id AT2G43910.1p  transcript_id AT2G43910.1  
At2g43910	chr2:018186852	0.0	C/18186852-18186951,18186410-18186540,18185792-18185878,18185607-18185707,18185350-18185449,18185209-18185255,18185023-18185096,18184596-18184696	AT2G43910.2  CDS  gene_syn F6E13.4  go_component plasma membrane|GO:0005886|17644812|IDA  go_process metabolic process|GO:0008152||IEA  go_function thiopurine S-methyltransferase activity|GO:0008119||IEA  go_function methyltransferase activity|GO:0008168||ISS  product thiol methyltransferase, putative  note thiol methyltransferase, putative; FUNCTIONS IN: methyltransferase activity, thiopurine S-methyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: guard cell, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Thiopurine S-methyltransferase (InterPro:IPR008854); BEST Arabidopsis thaliana protein match is: thiol methyltransferase, putative (TAIR:AT2G43920.1); Has 894 Blast hits to 892 proteins in 347 species: Archae - 18; Bacteria - 617; Metazoa - 4; Fungi - 67; Plants - 42; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).  protein_id AT2G43910.2p  transcript_id AT2G43910.2  protein_id AT2G43910.2p  transcript_id AT2G43910.2  
At2g43920	chr2:018190254	0.0	C/18190254-18190322,18190041-18190141,18189863-18189962,18189721-18189767,18189506-18189584,18189319-18189357	AT2G43920.3  CDS  gene_syn F6E13.5  go_component cytoplasm|GO:0005737||IEA  go_process metabolic process|GO:0008152||IEA  go_function thiopurine S-methyltransferase activity|GO:0008119||IEA  go_function methyltransferase activity|GO:0008168||ISS  product thiol methyltransferase, putative  note thiol methyltransferase, putative; FUNCTIONS IN: methyltransferase activity, thiopurine S-methyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Thiopurine S-methyltransferase (InterPro:IPR008854); BEST Arabidopsis thaliana protein match is: thiol methyltransferase, putative (TAIR:AT2G43910.1).  protein_id AT2G43920.3p  transcript_id AT2G43920.3  protein_id AT2G43920.3p  transcript_id AT2G43920.3  
At2g43920	chr2:018191149	0.0	C/18191149-18191248,18190561-18190691,18190254-18190340,18190041-18190141,18189863-18189962,18189717-18189767,18189552-18189584	AT2G43920.2  CDS  gene_syn F6E13.5  go_component cytoplasm|GO:0005737||IEA  go_process metabolic process|GO:0008152||IEA  go_function thiopurine S-methyltransferase activity|GO:0008119||IEA  go_function methyltransferase activity|GO:0008168||ISS  product thiol methyltransferase, putative  note thiol methyltransferase, putative; FUNCTIONS IN: methyltransferase activity, thiopurine S-methyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Thiopurine S-methyltransferase (InterPro:IPR008854); BEST Arabidopsis thaliana protein match is: thiol methyltransferase, putative (TAIR:AT2G43910.2); Has 697 Blast hits to 696 proteins in 266 species: Archae - 10; Bacteria - 454; Metazoa - 4; Fungi - 64; Plants - 41; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).  protein_id AT2G43920.2p  transcript_id AT2G43920.2  protein_id AT2G43920.2p  transcript_id AT2G43920.2  
At2g43920	chr2:018191149	0.0	C/18191149-18191248,18190561-18190691,18190254-18190340,18190041-18190141,18189863-18189962,18189721-18189767,18189506-18189584,18189319-18189357	AT2G43920.1  CDS  gene_syn F6E13.5  go_component cytoplasm|GO:0005737||IEA  go_process metabolic process|GO:0008152||IEA  go_function thiopurine S-methyltransferase activity|GO:0008119||IEA  go_function methyltransferase activity|GO:0008168||ISS  product thiol methyltransferase, putative  note thiol methyltransferase, putative; FUNCTIONS IN: methyltransferase activity, thiopurine S-methyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Thiopurine S-methyltransferase (InterPro:IPR008854); BEST Arabidopsis thaliana protein match is: thiol methyltransferase, putative (TAIR:AT2G43910.1); Has 729 Blast hits to 727 proteins in 274 species: Archae - 12; Bacteria - 474; Metazoa - 4; Fungi - 64; Plants - 42; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).  protein_id AT2G43920.1p  transcript_id AT2G43920.1  protein_id AT2G43920.1p  transcript_id AT2G43920.1  
At2g43930	chr2:018193188	0.0	W/18193188-18193332,18193795-18193863,18194221-18194325,18194484-18194545,18194631-18194741,18195460-18195582	AT2G43930.1  CDS  gene_syn F6E13.6  go_component membrane|GO:0016020||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process amino acid transport|GO:0006865||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_function amino acid transmembrane transporter activity|GO:0015171||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: amino acid transmembrane transporter activity, protein kinase activity, ATP binding; INVOLVED IN: amino acid transport, protein amino acid phosphorylation; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Amino acid/polyamine transporter I (InterPro:IPR002293), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ANP3 (ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 3); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT3G06030.1); Has 1887 Blast hits to 1886 proteins in 202 species: Archae - 0; Bacteria - 4; Metazoa - 693; Fungi - 452; Plants - 386; Viruses - 0; Other Eukaryotes - 352 (source: NCBI BLink).  protein_id AT2G43930.1p  transcript_id AT2G43930.1  protein_id AT2G43930.1p  transcript_id AT2G43930.1  
At2g43932	chr2:018194950	0.0	C/18194950-18195425	AT2G43932.1  pseudogenic_transcript  pseudo  function Pseudogene of AT2G43940; thiol methyltransferase, putative  
At2g43940	chr2:018197586	0.0	C/18197586-18197664,18197374-18197504,18197008-18197094,18196740-18196840,18196554-18196653,18196424-18196470,18196257-18196335,18196091-18196147	AT2G43940.1  CDS  gene_syn F6E13.7  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process metabolic process|GO:0008152||IEA  go_function thiopurine S-methyltransferase activity|GO:0008119||IEA  go_function methyltransferase activity|GO:0008168||ISS  product thiol methyltransferase, putative  note thiol methyltransferase, putative; FUNCTIONS IN: methyltransferase activity, thiopurine S-methyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: male gametophyte, guard cell, pollen tube; EXPRESSED DURING: M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: Thiopurine S-methyltransferase (InterPro:IPR008854); BEST Arabidopsis thaliana protein match is: thiol methyltransferase, putative (TAIR:AT2G43910.1); Has 1178 Blast hits to 1174 proteins in 393 species: Archae - 23; Bacteria - 836; Metazoa - 23; Fungi - 64; Plants - 50; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink).  protein_id AT2G43940.1p  transcript_id AT2G43940.1  protein_id AT2G43940.1p  transcript_id AT2G43940.1  
At2g43945	chr2:018199776	0.0	C/18199776-18199988,18198882-18199076,18198598-18198714,18198368-18198517,18198212-18198270,18197995-18198130	AT2G43945.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G59870.1); Has 245 Blast hits to 245 proteins in 63 species: Archae - 0; Bacteria - 102; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT2G43945.1p  transcript_id AT2G43945.1  protein_id AT2G43945.1p  transcript_id AT2G43945.1  
At2g43950	chr2:018202228	0.0	C/18202228-18202644,18201718-18201804,18201400-18201579,18201161-18201255,18200830-18201052	AT2G43950.2  CDS  gene_syn F6E13.8, OEP37  gene OEP37  function Constitutes a peptide sensitive ion channel in chloroplast outer membranes. Accumulates in germinating seeds and developing embryos.  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component chloroplast|GO:0009507|16624824|IDA  go_component plastid|GO:0009536|16618929|IDA  go_component chloroplast inner membrane|GO:0009706|12177442|IDA  go_process cation transport|GO:0006812|16624824|IDA  go_function ion channel activity|GO:0005216|16624824|IDA  product OEP37; ion channel  note OEP37; FUNCTIONS IN: ion channel activity; INVOLVED IN: cation transport; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 28 Blast hits to 27 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G43950.2p  transcript_id AT2G43950.2  protein_id AT2G43950.2p  transcript_id AT2G43950.2  
At2g43950	chr2:018202228	0.0	C/18202228-18202644,18201718-18201804,18201400-18201579,18201161-18201255,18200932-18201052,18200553-18200684	AT2G43950.1  CDS  gene_syn F6E13.8, OEP37  gene OEP37  function Constitutes a peptide sensitive ion channel in chloroplast outer membranes. Accumulates in germinating seeds and developing embryos.  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component chloroplast|GO:0009507|16624824|IDA  go_component plastid|GO:0009536|16618929|IDA  go_component chloroplast inner membrane|GO:0009706|12177442|IDA  go_process cation transport|GO:0006812|16624824|IDA  go_function ion channel activity|GO:0005216|16624824|IDA  product OEP37; ion channel  note OEP37; FUNCTIONS IN: ion channel activity; INVOLVED IN: cation transport; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 28 Blast hits to 27 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G43950.1p  transcript_id AT2G43950.1  protein_id AT2G43950.1p  transcript_id AT2G43950.1  
At2g43950	chr2:018202228	0.0	C/18202228-18202644,18201718-18201804,18201400-18201579,18201161-18201255,18200997-18201052,18200677-18200684	AT2G43950.3  CDS  gene_syn F6E13.8, OEP37  gene OEP37  function Constitutes a peptide sensitive ion channel in chloroplast outer membranes. Accumulates in germinating seeds and developing embryos.  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component chloroplast|GO:0009507|16624824|IDA  go_component plastid|GO:0009536|16618929|IDA  go_component chloroplast inner membrane|GO:0009706|12177442|IDA  go_process cation transport|GO:0006812|16624824|IDA  go_function ion channel activity|GO:0005216|16624824|IDA  product OEP37; ion channel  note OEP37; FUNCTIONS IN: ion channel activity; INVOLVED IN: cation transport; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast inner membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G43950.3p  transcript_id AT2G43950.3  protein_id AT2G43950.3p  transcript_id AT2G43950.3  
At2g43960	chr2:018204902	0.0	C/18204902-18204907,18203459-18204781	AT2G43960.1  CDS  gene_syn F6E13.9  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process RNA processing|GO:0006396||ISS  go_function RNA binding|GO:0003723||ISS  product SWAP (Suppressor-of-White-APricot)/surp domain-containing protein  note SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061); BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (TAIR:AT5G06520.1); Has 159 Blast hits to 128 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 66; Fungi - 13; Plants - 71; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G43960.1p  transcript_id AT2G43960.1  protein_id AT2G43960.1p  transcript_id AT2G43960.1  
At2g43970	chr2:018207432	0.0	C/18207432-18208031,18207278-18207359,18207091-18207185,18206933-18207004,18206774-18206853,18206573-18206675,18206274-18206342,18205936-18206097,18205535-18205861	AT2G43970.2  CDS  gene_syn F6E13.10  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_component ribonucleoprotein complex|GO:0030529||IEA  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_function nucleic acid binding|GO:0003676||ISS  product La domain-containing protein  note La domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: ribonucleoprotein complex, nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Lupus La protein (InterPro:IPR002344); BEST Arabidopsis thaliana protein match is: RNA-binding protein, putative (TAIR:AT3G19090.1); Has 5236 Blast hits to 3884 proteins in 293 species: Archae - 4; Bacteria - 326; Metazoa - 1714; Fungi - 387; Plants - 303; Viruses - 19; Other Eukaryotes - 2483 (source: NCBI BLink).  protein_id AT2G43970.2p  transcript_id AT2G43970.2  protein_id AT2G43970.2p  transcript_id AT2G43970.2  
At2g43970	chr2:018207432	0.0	C/18207432-18208031,18207278-18207359,18207091-18207185,18206933-18207004,18206774-18206853,18206573-18206675,18206433-18206480,18206274-18206342,18205936-18206097,18205535-18205861	AT2G43970.1  CDS  gene_syn F6E13.10  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_component ribonucleoprotein complex|GO:0030529||IEA  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_function nucleic acid binding|GO:0003676||ISS  product La domain-containing protein  note La domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: ribonucleoprotein complex, nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Lupus La protein (InterPro:IPR002344); BEST Arabidopsis thaliana protein match is: RNA-binding protein, putative (TAIR:AT3G19090.1); Has 5153 Blast hits to 3826 proteins in 285 species: Archae - 4; Bacteria - 293; Metazoa - 1685; Fungi - 385; Plants - 298; Viruses - 17; Other Eukaryotes - 2471 (source: NCBI BLink).  protein_id AT2G43970.1p  transcript_id AT2G43970.1  protein_id AT2G43970.1p  transcript_id AT2G43970.1  
At2g43980	chr2:018211482	0.0	C/18211482-18211604,18211221-18211256,18210883-18211075,18210529-18210620,18210243-18210311,18209856-18210061,18209564-18209714,18209282-18209395,18209116-18209178,18208875-18209020,18208661-18208790,18208437-18208580	AT2G43980.1  CDS  gene_syn AtITPK4, F6E13.11, inositol 1,3,4-trisphosphate 5/6-kinase 4  gene AtITPK4  go_component intracellular|GO:0005622||IEA  go_process inositol trisphosphate metabolic process|GO:0032957||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function catalytic activity|GO:0003824||IEA  go_function ATP binding|GO:0005524||IEA  go_function inositol-1,3,4-trisphosphate 5/6-kinase activity|GO:0035300||IEA  go_function inositol tetrakisphosphate 1-kinase activity|GO:0047325||IEA  go_function catalytic activity|GO:0003824||ISS  product AtITPK4 (inositol 1,3,4-trisphosphate 5/6-kinase 4); ATP binding / catalytic/ inositol tetrakisphosphate 1-kinase/ inositol-1,3,4-trisphosphate 5/6-kinase/ magnesium ion binding  note inositol 1,3,4-trisphosphate 5/6-kinase 4 (AtITPK4); FUNCTIONS IN: magnesium ion binding, inositol-1,3,4-trisphosphate 5/6-kinase activity, catalytic activity, ATP binding, inositol tetrakisphosphate 1-kinase activity; INVOLVED IN: inositol trisphosphate metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATP-grasp fold (InterPro:IPR011761), Inositol-tetrakisphosphate 1-kinase, uncharacterised-N-terminal (InterPro:IPR017418), Inositol 1, 3, 4-trisphosphate 56-kinase (InterPro:IPR008656); BEST Arabidopsis thaliana protein match is: inositol 1,3,4-trisphosphate 5/6-kinase family protein (TAIR:AT4G08170.2); Has 282 Blast hits to 279 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 76; Fungi - 0; Plants - 168; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT2G43980.1p  transcript_id AT2G43980.1  protein_id AT2G43980.1p  transcript_id AT2G43980.1  
At2g43990	chr2:018211974	0.0	W/18211974-18213872	AT2G43990.1  CDS  gene_syn F6E13.12  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; Has 1359 Blast hits to 445 proteins in 113 species: Archae - 0; Bacteria - 186; Metazoa - 289; Fungi - 92; Plants - 21; Viruses - 2; Other Eukaryotes - 769 (source: NCBI BLink).  protein_id AT2G43990.1p  transcript_id AT2G43990.1  protein_id AT2G43990.1p  transcript_id AT2G43990.1  
At2g44000	chr2:018214627	0.0	W/18214627-18215256	AT2G44000.1  CDS  gene_syn F6E13.13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64065.1); Has 34 Blast hits to 34 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G44000.1p  transcript_id AT2G44000.1  protein_id AT2G44000.1p  transcript_id AT2G44000.1  
At2g44010	chr2:018216879	0.0	W/18216879-18217184	AT2G44010.1  CDS  gene_syn F6E13.14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G59880.1); Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G44010.1p  transcript_id AT2G44010.1  protein_id AT2G44010.1p  transcript_id AT2G44010.1  
At2g44020	chr2:018217737	0.0	C/18217737-18219260	AT2G44020.1  CDS  gene_syn F6E13.15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial transcription termination factor-related / mTERF-related  note mitochondrial transcription termination factor-related / mTERF-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: mitochondrial transcription termination factor family protein / mTERF family protein (TAIR:AT4G02990.1); Has 741 Blast hits to 455 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 0; Plants - 600; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT2G44020.1p  transcript_id AT2G44020.1  protein_id AT2G44020.1p  transcript_id AT2G44020.1  
At2g44030	chr2:018220086	0.0	W/18220086-18221228	AT2G44030.1  CDS  gene_syn F6E13.16  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: stem, embryo, flower; EXPRESSED DURING: C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT3G46050.1); Has 1016 Blast hits to 984 proteins in 87 species: Archae - 6; Bacteria - 44; Metazoa - 348; Fungi - 8; Plants - 585; Viruses - 2; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT2G44030.1p  transcript_id AT2G44030.1  protein_id AT2G44030.1p  transcript_id AT2G44030.1  
At2g44040	chr2:018223985	0.0	C/18223985-18223998,18223673-18223886,18223274-18223511,18222940-18223073,18222770-18222844,18222566-18222667,18222364-18222473,18222175-18222262,18221985-18222053	AT2G44040.1  CDS  gene_syn F6E13.17  go_component chloroplast|GO:0009507|18431481|IDA  go_process metabolic process|GO:0008152||IEA  go_process lysine biosynthetic process via diaminopimelate|GO:0009089||IEA  go_process diaminopimelate biosynthetic process|GO:0019877||IEA  go_process oxidation reduction|GO:0055114||IEA  go_process lysine biosynthetic process via diaminopimelate|GO:0009089||ISS  go_function dihydrodipicolinate reductase activity|GO:0008839|15652176|IGI  go_function dihydrodipicolinate reductase activity|GO:0008839||ISS  product dihydrodipicolinate reductase family protein  note dihydrodipicolinate reductase family protein; FUNCTIONS IN: dihydrodipicolinate reductase activity; INVOLVED IN: oxidation reduction, lysine biosynthetic process via diaminopimelate, metabolic process, diaminopimelate biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Dihydrodipicolinate reductase, plant (InterPro:IPR011859), Dihydrodipicolinate reductase, bacterial and plant (InterPro:IPR011770), Dihydrodipicolinate reductase (InterPro:IPR000846); BEST Arabidopsis thaliana protein match is: dihydrodipicolinate reductase family protein (TAIR:AT3G59890.1); Has 2046 Blast hits to 2045 proteins in 732 species: Archae - 80; Bacteria - 1476; Metazoa - 2; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 440 (source: NCBI BLink).  protein_id AT2G44040.1p  transcript_id AT2G44040.1  protein_id AT2G44040.1p  transcript_id AT2G44040.1  
At2g44050	chr2:018224304	0.0	W/18224304-18224454,18224542-18224657,18224794-18224889,18224966-18225061,18225205-18225283,18225524-18225570,18225669-18225728,18225879-18225917	AT2G44050.1  CDS  gene_syn COI1 SUPPRESSOR1, COS1, F6E13.18, coronatine insensitive1 suppressor  gene COS1  function 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase [Arabidopsis thaliana]. Acts in the jasmonic acid signaling pathway.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_process riboflavin biosynthetic process|GO:0009231|10419541|IGI  go_process riboflavin biosynthetic process|GO:0009231||ISS  go_process jasmonic acid mediated signaling pathway|GO:0009867|15075400|IGI  go_function 6,7-dimethyl-8-ribityllumazine synthase activity|GO:0000906|10419541|IGI  go_function 6,7-dimethyl-8-ribityllumazine synthase activity|GO:0000906||ISS  product COS1 (COI1 SUPPRESSOR1); 6,7-dimethyl-8-ribityllumazine synthase  note COI1 SUPPRESSOR1 (COS1); FUNCTIONS IN: 6,7-dimethyl-8-ribityllumazine synthase activity; INVOLVED IN: riboflavin biosynthetic process, jasmonic acid mediated signaling pathway; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 6,7-dimethyl-8-ribityllumazine synthase (InterPro:IPR002180), 6,7-dimethyl-8-ribityllumazine synthase, chloroplast (InterPro:IPR017420); Has 5057 Blast hits to 5057 proteins in 1311 species: Archae - 121; Bacteria - 2797; Metazoa - 2; Fungi - 160; Plants - 55; Viruses - 0; Other Eukaryotes - 1922 (source: NCBI BLink).  protein_id AT2G44050.1p  transcript_id AT2G44050.1  protein_id AT2G44050.1p  transcript_id AT2G44050.1  
At2g44060	chr2:018226922	0.0	W/18226922-18227893,18227983-18227988	AT2G44060.1  CDS  gene_syn F6E13.19  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process response to desiccation|GO:0009269||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||ISS  go_function molecular_function|GO:0003674||ND  product late embryogenesis abundant family protein / LEA family protein  note late embryogenesis abundant family protein / LEA family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy, response to cadmium ion, response to desiccation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Water Stress and Hypersensitive response (InterPro:IPR013990), Late embryogenesis abundant protein 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: LEA14 (LATE EMBRYOGENESIS ABUNDANT 14) (TAIR:AT1G01470.1); Has 210 Blast hits to 202 proteins in 63 species: Archae - 2; Bacteria - 42; Metazoa - 0; Fungi - 0; Plants - 163; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G44060.1p  transcript_id AT2G44060.1  protein_id AT2G44060.1p  transcript_id AT2G44060.1  
At2g44060	chr2:018226922	0.0	W/18226922-18227893,18227983-18227988	AT2G44060.2  CDS  gene_syn F6E13.19  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process response to desiccation|GO:0009269||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||ISS  go_function molecular_function|GO:0003674||ND  product late embryogenesis abundant family protein / LEA family protein  note late embryogenesis abundant family protein / LEA family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy, response to cadmium ion, response to desiccation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Water Stress and Hypersensitive response (InterPro:IPR013990), Late embryogenesis abundant protein 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: LEA14 (LATE EMBRYOGENESIS ABUNDANT 14) (TAIR:AT1G01470.1); Has 210 Blast hits to 202 proteins in 63 species: Archae - 2; Bacteria - 42; Metazoa - 0; Fungi - 0; Plants - 163; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G44060.2p  transcript_id AT2G44060.2  protein_id AT2G44060.2p  transcript_id AT2G44060.2  
At2g44065	chr2:018228860	0.0	W/18228860-18228956,18229821-18230368	AT2G44065.1  CDS  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_component large ribosomal subunit|GO:0015934||IEA  go_process translation|GO:0006412||IEA  go_function RNA binding|GO:0003723||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_function transferase activity|GO:0016740||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L2 family protein  note ribosomal protein L2 family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding, transferase activity; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Translation protein SH3-like, subgroup (InterPro:IPR014722), Ribosomal protein L2, bacterial-type (InterPro:IPR005880), Ribosomal protein L2 (InterPro:IPR002171); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATCG01310.1); Has 7469 Blast hits to 7469 proteins in 2227 species: Archae - 235; Bacteria - 3117; Metazoa - 361; Fungi - 186; Plants - 960; Viruses - 0; Other Eukaryotes - 2610 (source: NCBI BLink).  protein_id AT2G44065.1p  transcript_id AT2G44065.1  protein_id AT2G44065.1p  transcript_id AT2G44065.1  
At2g44065	chr2:018228860	0.0	W/18228860-18228956,18229821-18230368	AT2G44065.2  CDS  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_component large ribosomal subunit|GO:0015934||IEA  go_process translation|GO:0006412||IEA  go_function RNA binding|GO:0003723||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_function transferase activity|GO:0016740||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L2 family protein  note ribosomal protein L2 family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding, transferase activity; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Translation protein SH3-like, subgroup (InterPro:IPR014722), Ribosomal protein L2, bacterial-type (InterPro:IPR005880), Ribosomal protein L2 (InterPro:IPR002171); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATCG01310.1); Has 7469 Blast hits to 7469 proteins in 2227 species: Archae - 235; Bacteria - 3117; Metazoa - 361; Fungi - 186; Plants - 960; Viruses - 0; Other Eukaryotes - 2610 (source: NCBI BLink).  protein_id AT2G44065.2p  transcript_id AT2G44065.2  protein_id AT2G44065.2p  transcript_id AT2G44065.2  
At2g44070	chr2:018232449	0.0	C/18232449-18232469,18231487-18232331,18231325-18231379,18231097-18231177	AT2G44070.1  CDS  gene_syn F6E13.20  go_process cellular metabolic process|GO:0044237||IEA  go_component eukaryotic translation initiation factor 2B complex|GO:0005851||ISS  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  go_function GTP binding|GO:0005525||ISS  product GTP binding / translation initiation factor  note GTP binding / translation initiation factor; FUNCTIONS IN: GTP binding, translation initiation factor activity; INVOLVED IN: translational initiation, cellular metabolic process; LOCATED IN: eukaryotic translation initiation factor 2B complex; CONTAINS InterPro DOMAIN/s: Initiation factor 2B related (InterPro:IPR000649); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 2B family protein / eIF-2B family protein (TAIR:AT5G38640.1); Has 2828 Blast hits to 2826 proteins in 575 species: Archae - 213; Bacteria - 868; Metazoa - 460; Fungi - 272; Plants - 105; Viruses - 0; Other Eukaryotes - 910 (source: NCBI BLink).  protein_id AT2G44070.1p  transcript_id AT2G44070.1  protein_id AT2G44070.1p  transcript_id AT2G44070.1  
At2g44080	chr2:018237726	0.0	W/18237726-18238133	AT2G44080.1  CDS  gene_syn ARGOS-LIKE, ARL, F6E13.21  gene ARL  function Encodes ARL, a gene similar to ARGOS involved in cell expansion-dependent organ growth. Upregulated by brassinosteroid. Acts downstream of BRI1.  go_component intracellular|GO:0005622|16824178|IDA  go_process response to brassinosteroid stimulus|GO:0009741|16824178|IEP  go_process brassinosteroid mediated signaling|GO:0009742|16824178|IGI  go_process cell growth|GO:0016049|16824178|IMP  go_process organ growth|GO:0035265|16824178|IMP  go_function molecular_function|GO:0003674||ND  product ARL (ARGOS-LIKE)  note ARGOS-LIKE (ARL); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: brassinosteroid mediated signaling, organ growth, response to brassinosteroid stimulus, cell growth; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: ARGOS (AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE) (TAIR:AT3G59900.1); Has 67 Blast hits to 67 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G44080.1p  transcript_id AT2G44080.1  protein_id AT2G44080.1p  transcript_id AT2G44080.1  
At2g44090	chr2:018240326	0.0	C/18240326-18240828,18239565-18239997,18238682-18239494	AT2G44090.1  CDS  gene_syn F6E13.22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G59910.1); Has 61 Blast hits to 61 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 40; Viruses - 3; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT2G44090.1p  transcript_id AT2G44090.1  protein_id AT2G44090.1p  transcript_id AT2G44090.1  
At2g44090	chr2:018240326	0.0	C/18240326-18240828,18239565-18239997,18238682-18239494	AT2G44090.2  CDS  gene_syn F6E13.22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G59910.1); Has 61 Blast hits to 61 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 40; Viruses - 3; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT2G44090.2p  transcript_id AT2G44090.2  protein_id AT2G44090.2p  transcript_id AT2G44090.2  
At2g44100	chr2:018241804	0.0	W/18241804-18241890,18242240-18242302,18242391-18242474,18242564-18242671,18242860-18243032,18243126-18243237,18243347-18243427,18243528-18243590,18243708-18243809,18243982-18244106,18244352-18244562,18244645-18244719,18244811-18244864	AT2G44100.1  CDS  gene_syn ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1, AT-GDI1, ATGDI1, F6E13.23, F6E13.26, F6E13_26  gene ATGDI1  function GDP dissociation inhibitor involved in vesicular membrane traffic  go_component cellular_component|GO:0005575||ND  go_process protein transport|GO:0015031||ISS  go_process plasma membrane to endosome transport|GO:0048227|9091322|IGI  go_function RAB GDP-dissociation inhibitor activity|GO:0005093|8953772|IGI  product ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1); RAB GDP-dissociation inhibitor  note ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1 (ATGDI1); FUNCTIONS IN: RAB GDP-dissociation inhibitor activity; INVOLVED IN: protein transport, plasma membrane to endosome transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rab GTPase activator (InterPro:IPR002005), GDP dissociation inhibitor (InterPro:IPR018203), Rab GDI protein (InterPro:IPR000806); BEST Arabidopsis thaliana protein match is: ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2); RAB GDP-dissociation inhibitor (TAIR:AT3G59920.1); Has 1044 Blast hits to 954 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 594; Fungi - 191; Plants - 110; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT2G44100.1p  transcript_id AT2G44100.1  protein_id AT2G44100.1p  transcript_id AT2G44100.1  
At2g44100	chr2:018241804	0.0	W/18241804-18241890,18242240-18242302,18242391-18242474,18242564-18242671,18242860-18243032,18243126-18243237,18243347-18243427,18243528-18243590,18243708-18243809,18243982-18244106,18244352-18244562,18244645-18244731	AT2G44100.2  CDS  gene_syn ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1, AT-GDI1, ATGDI1, F6E13.23, F6E13.26, F6E13_26  gene ATGDI1  function GDP dissociation inhibitor involved in vesicular membrane traffic  go_component cellular_component|GO:0005575||ND  go_process protein transport|GO:0015031||ISS  go_process plasma membrane to endosome transport|GO:0048227|9091322|IGI  go_function RAB GDP-dissociation inhibitor activity|GO:0005093|8953772|IGI  product ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1); RAB GDP-dissociation inhibitor  note ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1 (ATGDI1); FUNCTIONS IN: RAB GDP-dissociation inhibitor activity; INVOLVED IN: protein transport, plasma membrane to endosome transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rab GTPase activator (InterPro:IPR002005), Rab GDI protein (InterPro:IPR000806), GDP dissociation inhibitor (InterPro:IPR018203); BEST Arabidopsis thaliana protein match is: ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2); RAB GDP-dissociation inhibitor (TAIR:AT3G59920.1); Has 1044 Blast hits to 954 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 594; Fungi - 191; Plants - 110; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT2G44100.2p  transcript_id AT2G44100.2  protein_id AT2G44100.2p  transcript_id AT2G44100.2  
At2g44110	chr2:018248200	0.0	C/18248200-18248316,18248035-18248092,18247726-18247946,18247484-18247600,18247239-18247304,18247051-18247137,18246872-18246946,18246691-18246779,18246561-18246610,18246417-18246457,18246124-18246333,18245958-18246025,18245821-18245881,18245489-18245719	AT2G44110.1  CDS  gene_syn ATMLO15, F6E13.24, MILDEW RESISTANCE LOCUS O 15, MLO15  gene MLO15  function A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO15 belongs to the clade II, with ATMLO13 and ATMLO15. The gene is expressed during early seedling growth, in root tips and flower (papillae, anthers and pollen grains), as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).  go_component integral to membrane|GO:0016021||IEA  go_process cell death|GO:0008219||IEA  go_component integral to membrane|GO:0016021||ISS  go_process defense response|GO:0006952||ISS  go_process cell death|GO:0008219||ISS  go_function calmodulin binding|GO:0005516||ISS  product MLO15 (MILDEW RESISTANCE LOCUS O 15); calmodulin binding  note MILDEW RESISTANCE LOCUS O 15 (MLO15); FUNCTIONS IN: calmodulin binding; INVOLVED IN: cell death, defense response; LOCATED IN: integral to membrane; EXPRESSED IN: root tip, male gametophyte, root, papillae; CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326); BEST Arabidopsis thaliana protein match is: MLO1; calmodulin binding (TAIR:AT4G02600.2); Has 301 Blast hits to 293 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G44110.1p  transcript_id AT2G44110.1  protein_id AT2G44110.1p  transcript_id AT2G44110.1  
At2g44110	chr2:018248200	0.0	C/18248200-18248316,18248035-18248092,18247726-18247946,18247484-18247600,18247244-18247304,18247051-18247145,18246872-18246946,18246691-18246779,18246561-18246610,18246417-18246457,18246124-18246333,18245958-18246025,18245821-18245881,18245489-18245719	AT2G44110.2  CDS  gene_syn ATMLO15, F6E13.24, MILDEW RESISTANCE LOCUS O 15, MLO15  gene MLO15  function A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO15 belongs to the clade II, with ATMLO13 and ATMLO15. The gene is expressed during early seedling growth, in root tips and flower (papillae, anthers and pollen grains), as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).  go_component integral to membrane|GO:0016021||IEA  go_process cell death|GO:0008219||IEA  go_component integral to membrane|GO:0016021||ISS  go_process defense response|GO:0006952||ISS  go_process cell death|GO:0008219||ISS  go_function calmodulin binding|GO:0005516||ISS  product MLO15 (MILDEW RESISTANCE LOCUS O 15); calmodulin binding  note MILDEW RESISTANCE LOCUS O 15 (MLO15); FUNCTIONS IN: calmodulin binding; INVOLVED IN: cell death, defense response; LOCATED IN: integral to membrane; EXPRESSED IN: root tip, male gametophyte, root, papillae; CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326); BEST Arabidopsis thaliana protein match is: MLO1; calmodulin binding (TAIR:AT4G02600.2); Has 301 Blast hits to 293 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G44110.2p  transcript_id AT2G44110.2  protein_id AT2G44110.2p  transcript_id AT2G44110.2  
At2g44120	chr2:018250229	0.0	C/18250229-18250402,18250028-18250125,18249887-18249944,18249632-18249711,18249227-18249545	AT2G44120.1  CDS  gene_syn F6E13.25  go_component nucleolus|GO:0005730|15496452|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_function transcription regulator activity|GO:0030528||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L7 (RPL7C)  note 60S ribosomal protein L7 (RPL7C); FUNCTIONS IN: structural constituent of ribosome, transcription regulator activity; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30, N-terminal (InterPro:IPR012988), Ribosomal protein L30p/L7e, N-terminal (InterPro:IPR000517), Ribosomal protein L7, eukaryotic (InterPro:IPR005998), Ribosomal protein L30 (InterPro:IPR018038), Ribosomal protein L30, ferredoxin-like fold domain (InterPro:IPR016082); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L7 (RPL7B) (TAIR:AT2G01250.1); Has 982 Blast hits to 980 proteins in 291 species: Archae - 151; Bacteria - 0; Metazoa - 383; Fungi - 146; Plants - 112; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink).  protein_id AT2G44120.1p  transcript_id AT2G44120.1  protein_id AT2G44120.1p  transcript_id AT2G44120.1  
At2g44120	chr2:018250229	0.0	C/18250229-18250417,18250028-18250125,18249887-18249944,18249632-18249711,18249227-18249545	AT2G44120.2  CDS  gene_syn F6E13.25  go_component nucleolus|GO:0005730|15496452|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_function transcription regulator activity|GO:0030528||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L7 (RPL7C)  note 60S ribosomal protein L7 (RPL7C); FUNCTIONS IN: structural constituent of ribosome, transcription regulator activity; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30, N-terminal (InterPro:IPR012988), Ribosomal protein L30p/L7e, N-terminal (InterPro:IPR000517), Ribosomal protein L7, eukaryotic (InterPro:IPR005998), Ribosomal protein L30 (InterPro:IPR018038), Ribosomal protein L30, ferredoxin-like fold domain (InterPro:IPR016082); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L7 (RPL7B) (TAIR:AT2G01250.1); Has 982 Blast hits to 980 proteins in 291 species: Archae - 151; Bacteria - 0; Metazoa - 383; Fungi - 146; Plants - 112; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink).  protein_id AT2G44120.2p  transcript_id AT2G44120.2  protein_id AT2G44120.2p  transcript_id AT2G44120.2  
At2g44130	chr2:018253731	0.0	W/18253731-18254960	AT2G44130.1  CDS  gene_syn F6E13.26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT3G59940.1); Has 4261 Blast hits to 2607 proteins in 150 species: Archae - 8; Bacteria - 234; Metazoa - 3290; Fungi - 24; Plants - 494; Viruses - 5; Other Eukaryotes - 206 (source: NCBI BLink).  protein_id AT2G44130.1p  transcript_id AT2G44130.1  protein_id AT2G44130.1p  transcript_id AT2G44130.1  
At2g44140	chr2:018256709	0.0	C/18256709-18257165,18256543-18256628,18256420-18256467,18255949-18256328,18255716-18255854,18255513-18255568,18255353-18255423,18255106-18255272	AT2G44140.1  CDS  gene_syn F6E13.27  go_component chloroplast|GO:0009507||IEA  go_process autophagy|GO:0006914||ISS  go_function peptidase activity|GO:0008233||ISS  product autophagy 4a (APG4a)  note autophagy 4a (APG4a); FUNCTIONS IN: peptidase activity; INVOLVED IN: autophagy; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Peptidase C54 (InterPro:IPR005078); BEST Arabidopsis thaliana protein match is: autophagy 4b (APG4b) (TAIR:AT3G59950.1); Has 685 Blast hits to 659 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 373; Fungi - 125; Plants - 57; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink).  protein_id AT2G44140.1p  transcript_id AT2G44140.1  protein_id AT2G44140.1p  transcript_id AT2G44140.1  
At2g44140	chr2:018257169	0.0	C/18257169-18257206,18256709-18256992,18256543-18256628,18256420-18256467,18255949-18256328,18255716-18255854,18255513-18255568,18255353-18255423,18255106-18255272	AT2G44140.2  CDS  gene_syn F6E13.27  go_process autophagy|GO:0006914||ISS  go_function peptidase activity|GO:0008233||ISS  product autophagy 4a (APG4a)  note autophagy 4a (APG4a); FUNCTIONS IN: peptidase activity; INVOLVED IN: autophagy; CONTAINS InterPro DOMAIN/s: Peptidase C54 (InterPro:IPR005078); BEST Arabidopsis thaliana protein match is: autophagy 4b (APG4b) (TAIR:AT3G59950.1); Has 685 Blast hits to 659 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 373; Fungi - 125; Plants - 57; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink).  protein_id AT2G44140.2p  transcript_id AT2G44140.2  protein_id AT2G44140.2p  transcript_id AT2G44140.2  
At2g44150	chr2:018258863	0.0	W/18258863-18258880,18258961-18259090,18259181-18259298,18259423-18259522,18259600-18259678,18259772-18259943,18260040-18260120,18260203-18260350,18260484-18260523,18260614-18260704,18260793-18260841,18260938-18261003	AT2G44150.1  CDS  gene_syn ASHH3, F6E13.28, HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3, SDG7, SET DOMAIN-CONTAINING PROTEIN 7  gene ASHH3  go_component nucleus|GO:0005634||IEA  go_function histone-lysine N-methyltransferase activity|GO:0018024||IEA  go_process biological_process|GO:0008150||ND  product ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3); histone-lysine N-methyltransferase  note HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3 (ASHH3); FUNCTIONS IN: histone-lysine N-methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), Post-SET zinc-binding region (InterPro:IPR003616), AWS (InterPro:IPR006560); BEST Arabidopsis thaliana protein match is: ASHH4 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH4); histone-lysine N-methyltransferase (TAIR:AT3G59960.1); Has 4045 Blast hits to 4036 proteins in 342 species: Archae - 2; Bacteria - 302; Metazoa - 1862; Fungi - 359; Plants - 538; Viruses - 0; Other Eukaryotes - 982 (source: NCBI BLink).  protein_id AT2G44150.1p  transcript_id AT2G44150.1  protein_id AT2G44150.1p  transcript_id AT2G44150.1  
At2g44160	chr2:018262301	0.0	W/18262301-18262763,18262849-18262931,18263011-18263184,18263492-18263665,18263745-18263845,18263943-18264054,18264220-18264300,18264398-18264575,18264669-18265003,18265102-18265185	AT2G44160.1  CDS  gene_syn F6E13.29, METHYLENETETRAHYDROFOLATE REDUCTASE 2, MTHFR2  gene MTHFR2  function methylenetetrahydrofolate reductase MTHFR2 mRNA, complete  go_process methionine metabolic process|GO:0006555||IEA  go_function methylenetetrahydrofolate reductase (NADPH) activity|GO:0004489||IEA  go_process methionine metabolic process|GO:0006555||ISS  go_function methylenetetrahydrofolate reductase (NADPH) activity|GO:0004489||ISS  product MTHFR2 (METHYLENETETRAHYDROFOLATE REDUCTASE 2); methylenetetrahydrofolate reductase (NADPH)  note METHYLENETETRAHYDROFOLATE REDUCTASE 2 (MTHFR2); FUNCTIONS IN: methylenetetrahydrofolate reductase (NADPH) activity; INVOLVED IN: methionine metabolic process; EXPRESSED IN: male gametophyte, guard cell, cultured cell, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Methylenetetrahydrofolate reductase (InterPro:IPR003171), Eukaryotic-type methylenetetrahydrofolate reductase (InterPro:IPR004621); BEST Arabidopsis thaliana protein match is: MTHFR1 (METHYLENETETRAHYDROFOLATE REDUCTASE 1); methylenetetrahydrofolate reductase (NADPH) (TAIR:AT3G59970.3); Has 2794 Blast hits to 2779 proteins in 1004 species: Archae - 12; Bacteria - 1811; Metazoa - 125; Fungi - 189; Plants - 44; Viruses - 0; Other Eukaryotes - 613 (source: NCBI BLink).  protein_id AT2G44160.1p  transcript_id AT2G44160.1  protein_id AT2G44160.1p  transcript_id AT2G44160.1  
At2g44170	chr2:018265431	0.0	C/18265431-18267426	AT2G44170.1  pseudogenic_transcript  pseudo  gene_syn F6E13.30, N-MYRISTOYLTRANSFERASE 2, NMT2  gene NMT2  note pseudogene, myristoyl-CoA:protein N-myristoyltransferase (NMT), putative, similar to N-myristoyltransferase 1 (NMT1) (Arabidopsis thaliana) GI:7339834; contains Pfam profiles PF01233: Myristoyl-CoA:protein N-myristoyltransferase N-terminal domain, PF02799: Myristoyl-CoA:protein N-myristoyltransferase C-terminal domain; gene contains a frameshift. This could be a pseudogene or a sequencing error.; blastp match of 62% identity and 5.1e-121 P-value to GP|20804654|dbj|BAB92343.1||AP003273 putative N-myristoyl transferase {Oryza sativa (japonica cultivar-group)}  
At2g44175	chr2:018268788	0.0	W/18268788-18269126,18269206-18269214	AT2G44175.1  CDS  go_process N-terminal protein myristoylation|GO:0006499||IEA  go_function glycylpeptide N-tetradecanoyltransferase activity|GO:0004379||IEA  go_component cellular_component|GO:0005575||ND  product N-myristoyltransferase-related  note N-myristoyltransferase-related; FUNCTIONS IN: glycylpeptide N-tetradecanoyltransferase activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Myristoyl-CoA:protein N-myristoyltransferase (InterPro:IPR000903), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: NMT1 (MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE); glycylpeptide N-tetradecanoyltransferase/ myristoyltransferase (TAIR:AT5G57020.1); Has 63 Blast hits to 63 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 10; Plants - 28; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT2G44175.1p  transcript_id AT2G44175.1  protein_id AT2G44175.1p  transcript_id AT2G44175.1  
At2g44180	chr2:018271614	0.0	C/18271614-18271785,18271342-18271384,18271153-18271260,18270840-18271085,18270665-18270756,18270481-18270575,18270188-18270284,18269955-18270098,18269643-18269860,18269442-18269552	AT2G44180.1  CDS  gene_syn F6E13.31, MAP2A, METHIONINE AMINOPEPTIDASE 2A  gene MAP2A  function Encodes a MAP2 like methionine aminopeptidase. In MAP1A mutant background plants show an increased sensitivity to fumagillin resulting in defects in development. Phenotype is similar to RNAi lines which knock out all MAP2/MAP1 loci.  go_function aminopeptidase activity|GO:0004177||IEA  go_function metalloexopeptidase activity|GO:0008235||IEA  go_component cytoplasm|GO:0005737|11060042|IDA  go_process N-terminal protein amino acid modification|GO:0031365|15681659|TAS  product MAP2A (METHIONINE AMINOPEPTIDASE 2A); aminopeptidase/ metalloexopeptidase  note METHIONINE AMINOPEPTIDASE 2A (MAP2A); FUNCTIONS IN: metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: N-terminal protein amino acid modification; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24, structural domain (InterPro:IPR000994), Peptidase M24A, methionine aminopeptidase, subfamily 2 (InterPro:IPR002468), Peptidase M24A, methionine aminopeptidase, subfamily 2, binding site (InterPro:IPR018349), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: MAP2B (METHIONINE AMINOPEPTIDASE 2B); aminopeptidase/ metalloexopeptidase (TAIR:AT3G59990.3); Has 4054 Blast hits to 4011 proteins in 1168 species: Archae - 146; Bacteria - 2159; Metazoa - 403; Fungi - 222; Plants - 106; Viruses - 0; Other Eukaryotes - 1018 (source: NCBI BLink).  protein_id AT2G44180.1p  transcript_id AT2G44180.1  protein_id AT2G44180.1p  transcript_id AT2G44180.1  
At2g44190	chr2:018272346	0.0	W/18272346-18273254,18273412-18273531,18273650-18273766,18273859-18273948,18274055-18274162,18274252-18274332	AT2G44190.1  CDS  gene_syn EDE1, ENDOSPERM DEFECTIVE 1, F6E13.32  gene EDE1  function Encodes a novel microtubule binding protein that preferentially associates with nuclear microtubules during mitosis and is essential during the mitotic and cytokinetic stages that generate the endosperm and embryo.  go_component nuclear microtubule|GO:0005880|19151224|IDA  go_process microtubule cytoskeleton organization|GO:0000226|19151224|IMP  go_process endosperm development|GO:0009960|19151224|IMP  go_process cellularization of endosperm|GO:0010342|19151224|IMP  go_process seed development|GO:0048316|19151224|IMP  go_process cell division|GO:0051301|19151224|IMP  go_function microtubule binding|GO:0008017|19151224|IPI  product EDE1 (ENDOSPERM DEFECTIVE 1); microtubule binding  note ENDOSPERM DEFECTIVE 1 (EDE1); FUNCTIONS IN: microtubule binding; INVOLVED IN: microtubule cytoskeleton organization, seed development, cellularization of endosperm, cell division, endosperm development; LOCATED IN: nuclear microtubule; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF566 (InterPro:IPR007573); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60000.2); Has 345 Blast hits to 333 proteins in 79 species: Archae - 0; Bacteria - 6; Metazoa - 136; Fungi - 40; Plants - 113; Viruses - 3; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT2G44190.1p  transcript_id AT2G44190.1  protein_id AT2G44190.1p  transcript_id AT2G44190.1  
At2g44195	chr2:018274806	0.0	W/18274806-18274963,18275230-18275539	AT2G44195.1  CDS  gene_syn F4I1.13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G44200.1); Has 166 Blast hits to 166 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 40; Plants - 22; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT2G44195.1p  transcript_id AT2G44195.1  protein_id AT2G44195.1p  transcript_id AT2G44195.1  
At2g44198	chr2:018276066	0.0	C/18276066-18276164	AT2G44198.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G44198.1p  transcript_id AT2G44198.1  protein_id AT2G44198.1p  transcript_id AT2G44198.1  
At2g44200	chr2:018276302	0.0	W/18276302-18276489,18276829-18277135,18277254-18278240	AT2G44200.1  CDS  gene_syn F4I1.1, F4I1_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G44195.1); Has 53147 Blast hits to 28280 proteins in 1218 species: Archae - 88; Bacteria - 3066; Metazoa - 26533; Fungi - 5389; Plants - 2598; Viruses - 265; Other Eukaryotes - 15208 (source: NCBI BLink).  protein_id AT2G44200.1p  transcript_id AT2G44200.1  protein_id AT2G44200.1p  transcript_id AT2G44200.1  
At2g44210	chr2:018280809	0.0	W/18280809-18280958,18281049-18281135,18281227-18281490,18281580-18281744,18281823-18281876,18281969-18282115,18282211-18282591	AT2G44210.1  CDS  gene_syn F4I1.2  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55360.1); Has 435 Blast hits to 401 proteins in 18 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 10; Plants - 420; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G44210.1p  transcript_id AT2G44210.1  protein_id AT2G44210.1p  transcript_id AT2G44210.1  
At2g44210	chr2:018280809	0.0	W/18280809-18281135,18281227-18281490,18281580-18281744,18281823-18281876,18281969-18282115,18282211-18282591	AT2G44210.2  CDS  gene_syn F4I1.2  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55360.1); Has 428 Blast hits to 399 proteins in 18 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 10; Plants - 413; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G44210.2p  transcript_id AT2G44210.2  protein_id AT2G44210.2p  transcript_id AT2G44210.2  
At2g44220	chr2:018283803	0.0	W/18283803-18283955,18284045-18284131,18284216-18284443,18284542-18284703,18284787-18284840,18285040-18285186,18285310-18285690	AT2G44220.1  CDS  gene_syn F4I1.3  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G44240.1); Has 447 Blast hits to 411 proteins in 18 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 10; Plants - 431; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G44220.1p  transcript_id AT2G44220.1  protein_id AT2G44220.1p  transcript_id AT2G44220.1  
At2g44230	chr2:018286537	0.0	W/18286537-18286630,18286713-18288247	AT2G44230.1  CDS  gene_syn F4I1.4  go_component chloroplast|GO:0009507||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946, plant (InterPro:IPR009291); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G44260.1); Has 284 Blast hits to 277 proteins in 83 species: Archae - 0; Bacteria - 24; Metazoa - 42; Fungi - 89; Plants - 115; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT2G44230.1p  transcript_id AT2G44230.1  protein_id AT2G44230.1p  transcript_id AT2G44230.1  
At2g44240	chr2:018289964	0.0	W/18289964-18290116,18290219-18290305,18290373-18290600,18290888-18291049,18291134-18291187,18291384-18291530,18291827-18292204	AT2G44240.1  CDS  gene_syn F4I1.5  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979|18614705|IMP  product unknown protein  note unknown protein; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: stem, cotyledon, sepal, stamen, leaf; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G44220.1); Has 441 Blast hits to 403 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 10; Plants - 427; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G44240.1p  transcript_id AT2G44240.1  protein_id AT2G44240.1p  transcript_id AT2G44240.1  
At2g44250	chr2:018293457	0.0	W/18293457-18293618,18293716-18293802,18293892-18294125,18294255-18294416,18294650-18294703,18294792-18294938,18295031-18295414	AT2G44250.1  CDS  gene_syn F4I1.6  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G44210.1); Has 431 Blast hits to 394 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 10; Plants - 417; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G44250.1p  transcript_id AT2G44250.1  protein_id AT2G44250.1p  transcript_id AT2G44250.1  
At2g44255	chr2:018295756	0.0	C/18295756-18297567	AT2G44255.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G44260  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G44255.1  
At2g44260	chr2:018295988	0.0	W/18295988-18296108,18296199-18297739	AT2G44260.1  CDS  gene_syn F4I1.7  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946, plant (InterPro:IPR009291); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G44230.1); Has 216 Blast hits to 208 proteins in 60 species: Archae - 0; Bacteria - 14; Metazoa - 16; Fungi - 77; Plants - 105; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G44260.1p  transcript_id AT2G44260.1  protein_id AT2G44260.1p  transcript_id AT2G44260.1  
At2g44260	chr2:018295988	0.0	W/18295988-18297739	AT2G44260.2  CDS  gene_syn F4I1.7  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946, plant (InterPro:IPR009291); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G44230.1); Has 216 Blast hits to 208 proteins in 60 species: Archae - 0; Bacteria - 14; Metazoa - 16; Fungi - 77; Plants - 105; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G44260.2p  transcript_id AT2G44260.2  protein_id AT2G44260.2p  transcript_id AT2G44260.2  
At2g44270	chr2:018300058	0.0	C/18300058-18300153,18299637-18299751,18299425-18299567,18299218-18299337,18299010-18299122,18298831-18298923,18298707-18298747,18298532-18298598,18298340-18298451,18298078-18298245	AT2G44270.1  CDS  gene_syn F4I1.8  go_process tRNA processing|GO:0008033||IEA  go_function ATP binding|GO:0005524||IEA  product ATP binding  note ATP binding; FUNCTIONS IN: ATP binding; INVOLVED IN: tRNA processing; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Uncharacterised protein family UPF0021 (InterPro:IPR000541), PP-loop (InterPro:IPR011063), 2-thiocytidine tRNA biosynthesis protein, TtcA (InterPro:IPR012089); BEST Arabidopsis thaliana protein match is: ATP binding (TAIR:AT1G76170.1); Has 3072 Blast hits to 3023 proteins in 1040 species: Archae - 205; Bacteria - 2091; Metazoa - 125; Fungi - 122; Plants - 38; Viruses - 0; Other Eukaryotes - 491 (source: NCBI BLink).  protein_id AT2G44270.1p  transcript_id AT2G44270.1  protein_id AT2G44270.1p  transcript_id AT2G44270.1  
At2g44280	chr2:018303287	0.0	C/18303287-18303339,18303110-18303185,18302939-18303022,18302787-18302866,18302551-18302677,18302406-18302465,18302276-18302326,18302025-18302183,18301808-18301940,18301563-18301738	AT2G44280.3  CDS  gene_syn F4I1.9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60070.1).  protein_id AT2G44280.3p  transcript_id AT2G44280.3  protein_id AT2G44280.3p  transcript_id AT2G44280.3  
At2g44280	chr2:018303752	0.0	C/18303752-18303927,18303598-18303667,18303287-18303483,18303110-18303185,18302939-18303022,18302787-18302866,18302551-18302677,18302406-18302465,18302276-18302326,18302025-18302183,18301808-18301940,18301563-18301738	AT2G44280.1  CDS  gene_syn F4I1.9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60070.1); Has 781 Blast hits to 773 proteins in 246 species: Archae - 0; Bacteria - 563; Metazoa - 99; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT2G44280.1p  transcript_id AT2G44280.1  protein_id AT2G44280.1p  transcript_id AT2G44280.1  
At2g44280	chr2:018303752	0.0	C/18303752-18303927,18303598-18303667,18303287-18303483,18303110-18303185,18302939-18303022,18302787-18302866,18302551-18302677,18302406-18302465,18302276-18302326,18302025-18302183,18301808-18301940,18301563-18301738	AT2G44280.2  CDS  gene_syn F4I1.9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60070.1); Has 781 Blast hits to 773 proteins in 246 species: Archae - 0; Bacteria - 563; Metazoa - 99; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT2G44280.2p  transcript_id AT2G44280.2  protein_id AT2G44280.2p  transcript_id AT2G44280.2  
At2g44290	chr2:018305860	0.0	C/18305860-18306202,18305418-18305692	AT2G44290.1  CDS  gene_syn F4I1.10  go_component plasma membrane|GO:0005886|17317660|IDA  go_process lipid transport|GO:0006869||IEA  go_function lipid binding|GO:0008289||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3); FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: plasma membrane, anchored to membrane; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: lipid transfer protein-related (TAIR:AT2G44300.1); Has 408 Blast hits to 404 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 408; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G44290.1p  transcript_id AT2G44290.1  protein_id AT2G44290.1p  transcript_id AT2G44290.1  
At2g44300	chr2:018307947	0.0	C/18307947-18308286,18307468-18307742	AT2G44300.1  CDS  gene_syn F4I1.11  go_component plasma membrane|GO:0005886|17317660|IDA  go_process lipid transport|GO:0006869||IEA  go_function lipid binding|GO:0008289||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  product lipid transfer protein-related  note lipid transfer protein-related; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3) (TAIR:AT2G44290.1); Has 448 Blast hits to 444 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 448; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G44300.1p  transcript_id AT2G44300.1  protein_id AT2G44300.1p  transcript_id AT2G44300.1  
At2g44304	chr2:018308758	0.0	W/18308758-18308913	AT2G44304.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G44304.1p  transcript_id AT2G44304.1  protein_id AT2G44304.1p  transcript_id AT2G44304.1  
At2g44310	chr2:018309285	0.0	W/18309285-18309713	AT2G44310.1  CDS  gene_syn F4I1.12  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT1G54530.1); Has 158 Blast hits to 153 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT2G44310.1p  transcript_id AT2G44310.1  protein_id AT2G44310.1p  transcript_id AT2G44310.1  
At2g44320	chr2:018309977	0.0	C/18309977-18310058	AT2G44320.1  tRNA  gene_syn 19115.TRNA-SER-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: GCT)  transcript_id AT2G44320.1  
At2g44330	chr2:018310621	0.0	W/18310621-18311163	AT2G44330.1  CDS  gene_syn F4I1.14  go_function ubiquitin-protein ligase activity|GO:0004842|15644464|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G60080.1); Has 6627 Blast hits to 6609 proteins in 205 species: Archae - 0; Bacteria - 0; Metazoa - 2314; Fungi - 598; Plants - 2642; Viruses - 10; Other Eukaryotes - 1063 (source: NCBI BLink).  protein_id AT2G44330.1p  transcript_id AT2G44330.1  protein_id AT2G44330.1p  transcript_id AT2G44330.1  
At2g44340	chr2:018314279	0.0	W/18314279-18314845	AT2G44340.1  CDS  gene_syn F4I1.15  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product VQ motif-containing protein  note VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT3G60090.1); Has 78817 Blast hits to 8421 proteins in 126 species: Archae - 42; Bacteria - 64; Metazoa - 594; Fungi - 1932; Plants - 70; Viruses - 2; Other Eukaryotes - 76113 (source: NCBI BLink).  protein_id AT2G44340.1p  transcript_id AT2G44340.1  protein_id AT2G44340.1p  transcript_id AT2G44340.1  
At2g44350	chr2:018316673	0.0	W/18316673-18316723,18316822-18316887,18317034-18317075,18317257-18317322,18317415-18317480,18317603-18317716,18317825-18317888,18318066-18318148,18318277-18318326,18318406-18318483,18318628-18318756,18318891-18318933,18319025-18319111,18319279-18319380,18319729-18319836,18319928-18319978,18320126-18320199,18320277-18320328,18320426-18320524	AT2G44350.2  CDS  gene_syn ATCS, CITRATE SYNTHASE 4, CSY4, F4I1.16  gene ATCS  function encodes a mitochrondrion targeted citrate synthase, the first enzyme of the tricarboxylic acid cycle, catalyzing the condensation of acetyl-CoA and oxaloacetate, finally yielding citrate and CoA.  go_component cell wall|GO:0005618|16287169|IDA  go_component mitochondrion|GO:0005739|17137349|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|8979399|TAS  go_process tricarboxylic acid cycle|GO:0006099|8979399|TAS  go_process tricarboxylic acid cycle|GO:0006099||ISS  go_function ATP citrate synthase activity|GO:0003878||NAS  go_function citrate (SI)-synthase activity|GO:0004108||ISS  product ATCS; ATP binding / ATP citrate synthase/ citrate (SI)-synthase  note ATCS; FUNCTIONS IN: citrate (SI)-synthase activity, ATP citrate synthase activity, ATP binding; INVOLVED IN: response to cadmium ion, tricarboxylic acid cycle; LOCATED IN: mitochondrion, cell wall, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Citrate synthase-like, large alpha subdomain (InterPro:IPR016142), Citrate synthase, eukaryotic (InterPro:IPR010109), Citrate synthase-like (InterPro:IPR002020), Citrate synthase-like, core (InterPro:IPR016141); BEST Arabidopsis thaliana protein match is: CSY5 (citrate synthase 5); citrate (SI)-synthase/ transferase, transferring acyl groups, acyl groups converted into alkyl on transfer (TAIR:AT3G60100.1); Has 7180 Blast hits to 7176 proteins in 1667 species: Archae - 104; Bacteria - 3847; Metazoa - 240; Fungi - 208; Plants - 100; Viruses - 0; Other Eukaryotes - 2681 (source: NCBI BLink).  protein_id AT2G44350.2p  transcript_id AT2G44350.2  protein_id AT2G44350.2p  transcript_id AT2G44350.2  
At2g44350	chr2:018316673	0.0	W/18316673-18316723,18316825-18316887,18317034-18317075,18317257-18317322,18317415-18317480,18317603-18317716,18317825-18317888,18318066-18318148,18318277-18318326,18318406-18318483,18318628-18318756,18318891-18318933,18319025-18319111,18319279-18319380,18319729-18319836,18319928-18319978,18320126-18320199,18320277-18320328,18320426-18320524	AT2G44350.1  CDS  gene_syn ATCS, CITRATE SYNTHASE 4, CSY4, F4I1.16  gene ATCS  function encodes a mitochrondrion targeted citrate synthase, the first enzyme of the tricarboxylic acid cycle, catalyzing the condensation of acetyl-CoA and oxaloacetate, finally yielding citrate and CoA.  go_component cell wall|GO:0005618|16287169|IDA  go_component mitochondrion|GO:0005739|17137349|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|8979399|TAS  go_process tricarboxylic acid cycle|GO:0006099|8979399|TAS  go_process tricarboxylic acid cycle|GO:0006099||ISS  go_function ATP citrate synthase activity|GO:0003878||NAS  go_function citrate (SI)-synthase activity|GO:0004108||ISS  product ATCS; ATP binding / ATP citrate synthase/ citrate (SI)-synthase  note ATCS; FUNCTIONS IN: citrate (SI)-synthase activity, ATP citrate synthase activity, ATP binding; INVOLVED IN: response to cadmium ion, tricarboxylic acid cycle; LOCATED IN: mitochondrion, cell wall, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Citrate synthase-like, large alpha subdomain (InterPro:IPR016142), Citrate synthase, eukaryotic (InterPro:IPR010109), Citrate synthase-like (InterPro:IPR002020), Citrate synthase-like, core (InterPro:IPR016141); BEST Arabidopsis thaliana protein match is: CSY5 (citrate synthase 5); citrate (SI)-synthase/ transferase, transferring acyl groups, acyl groups converted into alkyl on transfer (TAIR:AT3G60100.1); Has 7180 Blast hits to 7176 proteins in 1667 species: Archae - 104; Bacteria - 3847; Metazoa - 240; Fungi - 208; Plants - 100; Viruses - 0; Other Eukaryotes - 2681 (source: NCBI BLink).  protein_id AT2G44350.1p  transcript_id AT2G44350.1  protein_id AT2G44350.1p  transcript_id AT2G44350.1  
At2g44360	chr2:018321525	0.0	C/18321525-18321584,18321179-18321286,18320855-18321094	AT2G44360.1  CDS  gene_syn F4I1.17  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 12 Blast hits to 12 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G44360.1p  transcript_id AT2G44360.1  protein_id AT2G44360.1p  transcript_id AT2G44360.1  
At2g44370	chr2:018322102	0.0	C/18322102-18322854	AT2G44370.1  CDS  gene_syn F4I1.18  product DC1 domain-containing protein  note DC1 domain-containing protein; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT2G17740.1); Has 1603 Blast hits to 573 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 5; Plants - 1571; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT2G44370.1p  transcript_id AT2G44370.1  protein_id AT2G44370.1p  transcript_id AT2G44370.1  
At2g44380	chr2:018323590	0.0	C/18323590-18324333	AT2G44380.1  CDS  gene_syn F4I1.19  product DC1 domain-containing protein  note DC1 domain-containing protein; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.10 ten leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT5G43520.1); Has 1624 Blast hits to 554 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 1610; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT2G44380.1p  transcript_id AT2G44380.1  protein_id AT2G44380.1p  transcript_id AT2G44380.1  
At2g44383	chr2:018324980	0.0	W/18324980-18325291	AT2G44383.1  pseudogenic_transcript  pseudo  function Pseudogene of AT2G44400; DC1 domain-containing protein  
At2g44390	chr2:018326403	0.0	C/18326403-18326551,18325811-18326291	AT2G44390.1  CDS  gene_syn F4I1.20  product DC1 domain-containing protein  note DC1 domain-containing protein; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT2G44380.1); Has 938 Blast hits to 480 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 936; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G44390.1p  transcript_id AT2G44390.1  protein_id AT2G44390.1p  transcript_id AT2G44390.1  
At2g44400	chr2:018327096	0.0	W/18327096-18327536	AT2G44400.1  CDS  gene_syn F4I1.21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT2G27660.1); Has 1281 Blast hits to 482 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G44400.1p  transcript_id AT2G44400.1  protein_id AT2G44400.1p  transcript_id AT2G44400.1  
At2g44410	chr2:018328873	0.0	W/18328873-18330114	AT2G44410.1  CDS  gene_syn F4I1.22  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G58030.3); Has 1080 Blast hits to 1080 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 589; Fungi - 94; Plants - 237; Viruses - 7; Other Eukaryotes - 153 (source: NCBI BLink).  protein_id AT2G44410.1p  transcript_id AT2G44410.1  protein_id AT2G44410.1p  transcript_id AT2G44410.1  
At2g44420	chr2:018330568	0.0	W/18330568-18330636,18330846-18331028,18331133-18331197,18331271-18331370,18331477-18331515,18331604-18331786,18332055-18332233,18332378-18332497,18332591-18332696	AT2G44420.1  CDS  gene_syn F4I1.23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein N-terminal asparagine amidohydrolase activity|GO:0008418||ISS  product protein N-terminal asparagine amidohydrolase family protein  note protein N-terminal asparagine amidohydrolase family protein; FUNCTIONS IN: protein N-terminal asparagine amidohydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; Has 110 Blast hits to 110 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 101; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G44420.1p  transcript_id AT2G44420.1  protein_id AT2G44420.1p  transcript_id AT2G44420.1  
At2g44430	chr2:018333603	0.0	W/18333603-18334069,18334170-18334707,18335230-18336165	AT2G44430.1  CDS  gene_syn F4I1.24  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product DNA-binding bromodomain-containing protein  note DNA-binding bromodomain-containing protein; FUNCTIONS IN: DNA binding; EXPRESSED IN: stem, male gametophyte, flower, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Bromodomain (InterPro:IPR001487), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT3G60110.1); Has 24729 Blast hits to 15230 proteins in 856 species: Archae - 32; Bacteria - 1403; Metazoa - 12038; Fungi - 2378; Plants - 862; Viruses - 304; Other Eukaryotes - 7712 (source: NCBI BLink).  protein_id AT2G44430.1p  transcript_id AT2G44430.1  protein_id AT2G44430.1p  transcript_id AT2G44430.1  
At2g44440	chr2:018338923	0.0	C/18338923-18338950,18338425-18338651,18338238-18338347,18337897-18338146,18337600-18337821,18337434-18337502,18337094-18337324,18336954-18337022,18336793-18336856,18336621-18336640	AT2G44440.1  CDS  gene_syn F4I1.25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product emsy N terminus domain-containing protein / ENT domain-containing protein  note emsy N terminus domain-containing protein / ENT domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ENT (InterPro:IPR005491); BEST Arabidopsis thaliana protein match is: emsy N terminus domain-containing protein / ENT domain-containing protein (TAIR:AT5G13020.1); Has 355 Blast hits to 341 proteins in 54 species: Archae - 0; Bacteria - 6; Metazoa - 159; Fungi - 14; Plants - 166; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT2G44440.1p  transcript_id AT2G44440.1  protein_id AT2G44440.1p  transcript_id AT2G44440.1  
At2g44450	chr2:018340966	0.0	W/18340966-18341115,18341201-18341270,18341515-18341573,18341658-18341733,18341839-18341916,18342125-18342212,18342291-18342546,18342647-18342977,18343066-18343097,18343196-18343298,18343381-18343477,18343564-18343744	AT2G44450.1  CDS  gene_syn BETA GLUCOSIDASE 15, BGLU15, F4I1.26  gene BGLU15  go_component cell wall|GO:0005618|14595688|IDA  go_component cell wall|GO:0005618|16287169|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU15 (BETA GLUCOSIDASE 15); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 15 (BGLU15); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU13 (BETA GLUCOSIDASE 13); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT5G44640.1); Has 5762 Blast hits to 5509 proteins in 797 species: Archae - 100; Bacteria - 3105; Metazoa - 607; Fungi - 134; Plants - 852; Viruses - 0; Other Eukaryotes - 964 (source: NCBI BLink).  protein_id AT2G44450.1p  transcript_id AT2G44450.1  protein_id AT2G44450.1p  transcript_id AT2G44450.1  
At2g44460	chr2:018346500	0.0	W/18346500-18346643,18347071-18347140,18347264-18347319,18347479-18347554,18347656-18347733,18347808-18347895,18347990-18348245,18348337-18348452,18348542-18348759,18348855-18348889,18349006-18349108,18349194-18349302,18349427-18349826	AT2G44460.1  CDS  gene_syn BETA GLUCOSIDASE 28, BGLU28, F4I1.27  gene BGLU28  go_component membrane|GO:0016020|17432890|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU28 (BETA GLUCOSIDASE 28); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 28 (BGLU28); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU29 (BETA GLUCOSIDASE 29); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT2G44470.3); Has 5787 Blast hits to 5542 proteins in 798 species: Archae - 98; Bacteria - 3154; Metazoa - 603; Fungi - 133; Plants - 855; Viruses - 0; Other Eukaryotes - 944 (source: NCBI BLink).  protein_id AT2G44460.1p  transcript_id AT2G44460.1  protein_id AT2G44460.1p  transcript_id AT2G44460.1  
At2g44470	chr2:018354258	0.0	W/18354258-18354401,18354922-18354991,18355109-18355164,18355260-18355335,18355425-18355502,18355609-18355696,18355812-18356067,18356249-18356367,18356461-18356678,18356786-18356820,18356917-18357019,18357192-18357300,18358050-18358470	AT2G44470.3  CDS  gene_syn BETA GLUCOSIDASE 29, BGLU29, F4I1.28  gene BGLU29  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU29 (BETA GLUCOSIDASE 29); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 29 (BGLU29); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU28 (BETA GLUCOSIDASE 28); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT2G44460.1); Has 5876 Blast hits to 5619 proteins in 799 species: Archae - 98; Bacteria - 3174; Metazoa - 606; Fungi - 133; Plants - 925; Viruses - 0; Other Eukaryotes - 940 (source: NCBI BLink).  protein_id AT2G44470.3p  transcript_id AT2G44470.3  protein_id AT2G44470.3p  transcript_id AT2G44470.3  
At2g44470	chr2:018354258	0.0	W/18354258-18354401,18354922-18354991,18355109-18355164,18355260-18355335,18355425-18355502,18355609-18355696,18355812-18356067,18356249-18356367,18356461-18356678,18356786-18356820,18356917-18357019,18357192-18357304	AT2G44470.1  CDS  gene_syn BETA GLUCOSIDASE 29, BGLU29, F4I1.28  gene BGLU29  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU29 (BETA GLUCOSIDASE 29); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 29 (BGLU29); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU28 (BETA GLUCOSIDASE 28); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT2G44460.1); Has 5354 Blast hits to 5155 proteins in 790 species: Archae - 98; Bacteria - 3057; Metazoa - 580; Fungi - 131; Plants - 829; Viruses - 0; Other Eukaryotes - 659 (source: NCBI BLink).  protein_id AT2G44470.1p  transcript_id AT2G44470.1  protein_id AT2G44470.1p  transcript_id AT2G44470.1  
At2g44470	chr2:018354258	0.0	W/18354258-18354401,18354922-18354991,18355109-18355164,18355260-18355335,18355425-18355502,18355609-18355696,18355812-18356067,18356249-18356367,18356461-18356678,18356786-18356874	AT2G44470.2  CDS  gene_syn BETA GLUCOSIDASE 29, BGLU29, F4I1.28  gene BGLU29  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU29 (BETA GLUCOSIDASE 29); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 29 (BGLU29); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU28 (BETA GLUCOSIDASE 28); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT2G44460.1); Has 5273 Blast hits to 5084 proteins in 789 species: Archae - 98; Bacteria - 3037; Metazoa - 573; Fungi - 131; Plants - 815; Viruses - 0; Other Eukaryotes - 619 (source: NCBI BLink).  protein_id AT2G44470.2p  transcript_id AT2G44470.2  protein_id AT2G44470.2p  transcript_id AT2G44470.2  
At2g44480	chr2:018359780	0.0	W/18359780-18359941,18360032-18360101,18360308-18360366,18360461-18360536,18360665-18360742,18360884-18360971,18361049-18361301,18361412-18361527,18361739-18361956,18362048-18362079,18362180-18362282,18362583-18362691,18362812-18363001	AT2G44480.1  CDS  gene_syn BETA GLUCOSIDASE 17, BGLU17, F4I1.29  gene BGLU17  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU17 (BETA GLUCOSIDASE 17); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 17 (BGLU17); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: stem, male gametophyte, sepal, hypocotyl, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU15 (BETA GLUCOSIDASE 15); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT2G44450.1); Has 5774 Blast hits to 5518 proteins in 796 species: Archae - 98; Bacteria - 3153; Metazoa - 590; Fungi - 134; Plants - 853; Viruses - 0; Other Eukaryotes - 946 (source: NCBI BLink).  protein_id AT2G44480.1p  transcript_id AT2G44480.1  protein_id AT2G44480.1p  transcript_id AT2G44480.1  
At2g44480	chr2:018360476	0.0	W/18360476-18360536,18360665-18360742,18360884-18360971,18361049-18361301,18361412-18361527,18361739-18361956,18362048-18362079,18362180-18362282,18362583-18362691,18362812-18363001	AT2G44480.2  CDS  gene_syn BETA GLUCOSIDASE 17, BGLU17, F4I1.29  gene BGLU17  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU17 (BETA GLUCOSIDASE 17); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 17 (BGLU17); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: stem, male gametophyte, sepal, hypocotyl, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU15 (BETA GLUCOSIDASE 15); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT2G44450.1); Has 5664 Blast hits to 5424 proteins in 797 species: Archae - 98; Bacteria - 3142; Metazoa - 584; Fungi - 131; Plants - 821; Viruses - 0; Other Eukaryotes - 888 (source: NCBI BLink).  protein_id AT2G44480.2p  transcript_id AT2G44480.2  protein_id AT2G44480.2p  transcript_id AT2G44480.2  
At2g44490	chr2:018364872	0.0	W/18364872-18364879,18364982-18365072,18365162-18365290,18365393-18365468,18365557-18365722,18365796-18366051,18366141-18366256,18366390-18366607,18366697-18366834,18366939-18367053,18367146-18367515	AT2G44490.1  CDS  gene_syn BETA GLUCOSIDASE 26, BGLU26, F4I1.30, PEN2, PENETRATION 2  gene PEN2  function Encodes a glycosyl hydrolase that localizes to peroxisomes and acts as a component of an inducible preinvasion resistance mechanism. Required for mlo resistance.  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component peroxisome|GO:0005777|16293760|IDA  go_component membrane|GO:0016020|16293760|IDA  go_process defense response to fungus, incompatible interaction|GO:0009817|16293760|IMP  go_process glucosinolate metabolic process|GO:0019760|19095900|IMP  go_process indole glucosinolate catabolic process|GO:0042344|19095898|IMP  go_process defense response to bacterium|GO:0042742|19095898|IMP  go_process callose deposition in cell wall during defense response|GO:0052544|19095898|IMP  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function thioglucosidase activity|GO:0019137|19095900|IDA  product PEN2 (PENETRATION 2); hydrolase, hydrolyzing O-glycosyl compounds / thioglucosidase  note PENETRATION 2 (PEN2); FUNCTIONS IN: thioglucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: glucosinolate metabolic process, defense response to fungus, incompatible interaction, defense response to bacterium, callose deposition in cell wall during defense response, indole glucosinolate catabolic process; LOCATED IN: peroxisome, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU27 (BETA GLUCOSIDASE 27); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT3G60120.1); Has 5784 Blast hits to 5530 proteins in 797 species: Archae - 98; Bacteria - 3155; Metazoa - 605; Fungi - 134; Plants - 849; Viruses - 0; Other Eukaryotes - 943 (source: NCBI BLink).  protein_id AT2G44490.1p  transcript_id AT2G44490.1  protein_id AT2G44490.1p  transcript_id AT2G44490.1  
At2g44500	chr2:018374447	0.0	W/18374447-18375120,18375214-18375382,18375478-18375851,18375931-18376435	AT2G44500.1  CDS  gene_syn F4I1.31  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G07900.1); Has 429 Blast hits to 426 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 428; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G44500.1p  transcript_id AT2G44500.1  protein_id AT2G44500.1p  transcript_id AT2G44500.1  
At2g44500	chr2:018374447	0.0	W/18374447-18375120,18375214-18375382,18375478-18375903	AT2G44500.2  CDS  gene_syn F4I1.31  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G07900.1); Has 416 Blast hits to 416 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 415; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G44500.2p  transcript_id AT2G44500.2  protein_id AT2G44500.2p  transcript_id AT2G44500.2  
At2g44510	chr2:018377411	0.0	W/18377411-18377564,18377647-18377729,18377818-18378042,18378164-18378373,18378462-18378527,18378609-18378701,18378793-18378849,18378938-18379030	AT2G44510.1  CDS  gene_syn F4I1.32  go_component nucleolus|GO:0005730|15496452|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product p21Cip1-binding protein-related  note p21Cip1-binding protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G03830.1); Has 282 Blast hits to 282 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 92; Plants - 27; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT2G44510.1p  transcript_id AT2G44510.1  protein_id AT2G44510.1p  transcript_id AT2G44510.1  
At2g44520	chr2:018379660	0.0	W/18379660-18379979,18380067-18380199,18380349-18380486,18380587-18380720,18380842-18380967,18381198-18381301,18381391-18381731	AT2G44520.1  CDS  gene_syn COX10, F4I1.50, F4I1_50, cytochrome c oxidase 10  gene COX10  go_component integral to membrane|GO:0016021||IEA  go_component mitochondrial membrane|GO:0031966||IEA  go_process heme biosynthetic process|GO:0006783||IEA  go_function prenyltransferase activity|GO:0004659||IEA  go_function protoheme IX farnesyltransferase activity|GO:0008495||IEA  go_function prenyltransferase activity|GO:0004659||ISS  product COX10 (cytochrome c oxidase 10); prenyltransferase/ protoheme IX farnesyltransferase  note cytochrome c oxidase 10 (COX10); FUNCTIONS IN: protoheme IX farnesyltransferase activity, prenyltransferase activity; INVOLVED IN: heme biosynthetic process; LOCATED IN: integral to membrane, mitochondrial membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protohaem IX farnesyltransferase, mitochondria (InterPro:IPR016315), Protohaem IX farnesyltransferase (InterPro:IPR006369), UbiA prenyltransferase (InterPro:IPR000537); Has 6172 Blast hits to 6172 proteins in 1140 species: Archae - 109; Bacteria - 2789; Metazoa - 160; Fungi - 121; Plants - 40; Viruses - 0; Other Eukaryotes - 2953 (source: NCBI BLink).  protein_id AT2G44520.1p  transcript_id AT2G44520.1  protein_id AT2G44520.1p  transcript_id AT2G44520.1  
At2g44525	chr2:018382130	0.0	W/18382130-18382302,18382459-18382575,18382860-18382894,18383036-18383136,18383234-18383320	AT2G44525.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF498 (InterPro:IPR007523); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60150.1); Has 656 Blast hits to 656 proteins in 282 species: Archae - 0; Bacteria - 346; Metazoa - 107; Fungi - 59; Plants - 38; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).  protein_id AT2G44525.1p  transcript_id AT2G44525.1  protein_id AT2G44525.1p  transcript_id AT2G44525.1  
At2g44530	chr2:018383732	0.0	W/18383732-18383827,18383962-18384138,18384366-18384614,18384885-18385028,18385136-18385303,18385375-18385444,18385525-18385606,18385696-18385855,18385936-18385974	AT2G44530.1  CDS  gene_syn F4I1.54  go_component chloroplast|GO:0009507||IEA  go_process nucleoside metabolic process|GO:0009116||IEA  go_process ribonucleoside monophosphate biosynthetic process|GO:0009156||IEA  go_process nucleotide biosynthetic process|GO:0009165||IEA  go_process cellular biosynthetic process|GO:0044249||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function ribose phosphate diphosphokinase activity|GO:0004749||IEA  go_process nucleotide biosynthetic process|GO:0009165||ISS  go_function ribose phosphate diphosphokinase activity|GO:0004749||ISS  product ribose-phosphate pyrophosphokinase, putative / phosphoribosyl diphosphate synthetase, putative  note ribose-phosphate pyrophosphokinase, putative / phosphoribosyl diphosphate synthetase, putative; FUNCTIONS IN: magnesium ion binding, ribose phosphate diphosphokinase activity; INVOLVED IN: cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836), Phosphoribosyl pyrophosphokinase (InterPro:IPR005946), Phosphoribosyl pyrophosphate synthetase, conserved site (InterPro:IPR000842); BEST Arabidopsis thaliana protein match is: ribose-phosphate pyrophosphokinase 2 / phosphoribosyl diphosphate synthetase 2 (PRS2) (TAIR:AT1G32380.1); Has 7996 Blast hits to 7829 proteins in 1556 species: Archae - 171; Bacteria - 3334; Metazoa - 500; Fungi - 457; Plants - 129; Viruses - 7; Other Eukaryotes - 3398 (source: NCBI BLink).  protein_id AT2G44530.1p  transcript_id AT2G44530.1  protein_id AT2G44530.1p  transcript_id AT2G44530.1  
At2g44530	chr2:018383732	0.0	W/18383732-18383827,18383965-18384138,18384366-18384614,18384885-18385028,18385136-18385303,18385375-18385444,18385525-18385606,18385696-18385855,18385936-18385974	AT2G44530.2  CDS  gene_syn F4I1.54  go_component chloroplast|GO:0009507||IEA  go_process nucleoside metabolic process|GO:0009116||IEA  go_process ribonucleoside monophosphate biosynthetic process|GO:0009156||IEA  go_process nucleotide biosynthetic process|GO:0009165||IEA  go_process cellular biosynthetic process|GO:0044249||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function ribose phosphate diphosphokinase activity|GO:0004749||IEA  go_process nucleotide biosynthetic process|GO:0009165||ISS  go_function ribose phosphate diphosphokinase activity|GO:0004749||ISS  product ribose-phosphate pyrophosphokinase, putative / phosphoribosyl diphosphate synthetase, putative  note ribose-phosphate pyrophosphokinase, putative / phosphoribosyl diphosphate synthetase, putative; FUNCTIONS IN: magnesium ion binding, ribose phosphate diphosphokinase activity; INVOLVED IN: cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836), Phosphoribosyl pyrophosphokinase (InterPro:IPR005946), Phosphoribosyl pyrophosphate synthetase, conserved site (InterPro:IPR000842); BEST Arabidopsis thaliana protein match is: ribose-phosphate pyrophosphokinase 2 / phosphoribosyl diphosphate synthetase 2 (PRS2) (TAIR:AT1G32380.1); Has 7996 Blast hits to 7829 proteins in 1556 species: Archae - 171; Bacteria - 3334; Metazoa - 500; Fungi - 457; Plants - 129; Viruses - 7; Other Eukaryotes - 3398 (source: NCBI BLink).  protein_id AT2G44530.2p  transcript_id AT2G44530.2  protein_id AT2G44530.2p  transcript_id AT2G44530.2  
At2g44540	chr2:018387889	0.0	C/18387889-18388110,18387138-18387791,18386770-18387051,18386341-18386658	AT2G44540.1  CDS  gene_syn Arabidopsis thaliana glycosyl hydrolase 9B9, AtGH9B9, F4I1.52, F4I1_52  gene AtGH9B9  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product AtGH9B9 (Arabidopsis thaliana glycosyl hydrolase 9B9); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds  note Arabidopsis thaliana glycosyl hydrolase 9B9 (AtGH9B9); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: AtGH9B10 (Arabidopsis thaliana glycosyl hydrolase 9B10); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT2G44550.1); Has 1136 Blast hits to 1131 proteins in 194 species: Archae - 0; Bacteria - 342; Metazoa - 131; Fungi - 14; Plants - 620; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT2G44540.1p  transcript_id AT2G44540.1  protein_id AT2G44540.1p  transcript_id AT2G44540.1  
At2g44550	chr2:018390921	0.0	C/18390921-18391142,18390176-18390826,18389809-18390090,18389381-18389698	AT2G44550.1  CDS  gene_syn Arabidopsis thaliana glycosyl hydrolase 9B10, AtGH9B10, F4I1.55  gene AtGH9B10  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product AtGH9B10 (Arabidopsis thaliana glycosyl hydrolase 9B10); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds  note Arabidopsis thaliana glycosyl hydrolase 9B10 (AtGH9B10); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: AtGH9B9 (Arabidopsis thaliana glycosyl hydrolase 9B9); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT2G44540.1); Has 1134 Blast hits to 1129 proteins in 195 species: Archae - 0; Bacteria - 340; Metazoa - 131; Fungi - 14; Plants - 620; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT2G44550.1p  transcript_id AT2G44550.1  protein_id AT2G44550.1p  transcript_id AT2G44550.1  
At2g44560	chr2:018393433	0.0	C/18393433-18393654,18392689-18393342,18392324-18392605,18391914-18392231	AT2G44560.1  CDS  gene_syn Arabidopsis thaliana glycosyl hydrolase 9B11, AtGH9B11, F16B22.5  gene AtGH9B11  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product AtGH9B11 (Arabidopsis thaliana glycosyl hydrolase 9B11); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds  note Arabidopsis thaliana glycosyl hydrolase 9B11 (AtGH9B11); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: AtGH9B9 (Arabidopsis thaliana glycosyl hydrolase 9B9); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT2G44540.1); Has 1150 Blast hits to 1145 proteins in 195 species: Archae - 0; Bacteria - 355; Metazoa - 130; Fungi - 14; Plants - 620; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT2G44560.1p  transcript_id AT2G44560.1  protein_id AT2G44560.1p  transcript_id AT2G44560.1  
At2g44570	chr2:018396047	0.0	C/18396047-18396268,18395297-18395950,18394935-18395219,18394425-18394742	AT2G44570.1  CDS  gene_syn Arabidopsis thaliana glycosyl hydrolase 9B12, AtGH9B12, F16B22.6  gene AtGH9B12  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product AtGH9B12 (Arabidopsis thaliana glycosyl hydrolase 9B12); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds  note Arabidopsis thaliana glycosyl hydrolase 9B12 (AtGH9B12); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: AtGH9B11 (Arabidopsis thaliana glycosyl hydrolase 9B11); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT2G44560.1); Has 1170 Blast hits to 1164 proteins in 200 species: Archae - 0; Bacteria - 368; Metazoa - 132; Fungi - 14; Plants - 623; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT2G44570.1p  transcript_id AT2G44570.1  protein_id AT2G44570.1p  transcript_id AT2G44570.1  
At2g44581	chr2:018397996	0.0	C/18397996-18398433	AT2G44581.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT2G44578.1); Has 6224 Blast hits to 6205 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 1929; Fungi - 538; Plants - 2741; Viruses - 26; Other Eukaryotes - 990 (source: NCBI BLink).  protein_id AT2G44581.1p  transcript_id AT2G44581.1  protein_id AT2G44581.1p  transcript_id AT2G44581.1  
At2g44578	chr2:018400864	0.0	C/18400864-18401301	AT2G44578.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT2G44581.1); Has 6429 Blast hits to 6413 proteins in 213 species: Archae - 0; Bacteria - 6; Metazoa - 2026; Fungi - 558; Plants - 2747; Viruses - 34; Other Eukaryotes - 1058 (source: NCBI BLink).  protein_id AT2G44578.1p  transcript_id AT2G44578.1  protein_id AT2G44578.1p  transcript_id AT2G44578.1  
At2g44580	chr2:018403264	0.0	C/18403264-18403412,18402273-18403181,18402081-18402183	AT2G44580.1  CDS  gene_syn F16B22.7  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; Has 162 Blast hits to 161 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 36; Plants - 18; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT2G44580.1p  transcript_id AT2G44580.1  protein_id AT2G44580.1p  transcript_id AT2G44580.1  
At2g44590	chr2:018406830	0.0	C/18406830-18406961,18406676-18406739,18406477-18406584,18406295-18406396,18406020-18406081,18405809-18405899,18405643-18405707,18405336-18405530,18405129-18405248,18404976-18405046,18404655-18404880,18404529-18404579,18404082-18404453,18403856-18403984	AT2G44590.2  CDS  gene_syn ADL1D, ARABIDOPSIS DYNAMIN-RELATED PROTEIN 1D, F16B22.8  gene ADL1D  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function GTPase activity|GO:0003924||ISS  go_function GTP binding|GO:0005525||ISS  product ADL1D (ARABIDOPSIS DYNAMIN-RELATED PROTEIN 1D); GTP binding / GTPase  note ARABIDOPSIS DYNAMIN-RELATED PROTEIN 1D (ADL1D); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower; EXPRESSED DURING: M germinated pollen stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130), Dynamin, GTPase region (InterPro:IPR001401), Dynamin central region (InterPro:IPR000375); BEST Arabidopsis thaliana protein match is: ADL1E (ARABIDOPSIS DYNAMIN-LIKE 1E); GTP binding / GTPase (TAIR:AT3G60190.1); Has 2037 Blast hits to 1959 proteins in 231 species: Archae - 0; Bacteria - 4; Metazoa - 939; Fungi - 521; Plants - 315; Viruses - 0; Other Eukaryotes - 258 (source: NCBI BLink).  protein_id AT2G44590.2p  transcript_id AT2G44590.2  protein_id AT2G44590.2p  transcript_id AT2G44590.2  
At2g44590	chr2:018406830	0.0	C/18406830-18406961,18406676-18406739,18406477-18406584,18406295-18406396,18406020-18406081,18405809-18405899,18405643-18405707,18405336-18405530,18405129-18405248,18404976-18405046,18404655-18404880,18404529-18404579,18404082-18404453,18403856-18403987	AT2G44590.1  CDS  gene_syn ADL1D, ARABIDOPSIS DYNAMIN-RELATED PROTEIN 1D, F16B22.8  gene ADL1D  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function GTPase activity|GO:0003924||ISS  go_function GTP binding|GO:0005525||ISS  product ADL1D (ARABIDOPSIS DYNAMIN-RELATED PROTEIN 1D); GTP binding / GTPase  note ARABIDOPSIS DYNAMIN-RELATED PROTEIN 1D (ADL1D); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower; EXPRESSED DURING: M germinated pollen stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130), Dynamin, GTPase region (InterPro:IPR001401), Dynamin central region (InterPro:IPR000375); BEST Arabidopsis thaliana protein match is: ADL1E (ARABIDOPSIS DYNAMIN-LIKE 1E); GTP binding / GTPase (TAIR:AT3G60190.1); Has 2041 Blast hits to 1963 proteins in 233 species: Archae - 0; Bacteria - 8; Metazoa - 939; Fungi - 521; Plants - 315; Viruses - 0; Other Eukaryotes - 258 (source: NCBI BLink).  protein_id AT2G44590.1p  transcript_id AT2G44590.1  protein_id AT2G44590.1p  transcript_id AT2G44590.1  
At2g44590	chr2:018406830	0.0	C/18406830-18406961,18406676-18406739,18406477-18406584,18406295-18406396,18406159-18406209,18406020-18406081,18405809-18405899,18405643-18405707,18405336-18405530,18405129-18405248,18404976-18405046,18404655-18404880,18404529-18404579,18404082-18404453,18403856-18403984	AT2G44590.3  CDS  gene_syn ADL1D, ARABIDOPSIS DYNAMIN-RELATED PROTEIN 1D, F16B22.8  gene ADL1D  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function GTPase activity|GO:0003924||ISS  go_function GTP binding|GO:0005525||ISS  product ADL1D (ARABIDOPSIS DYNAMIN-RELATED PROTEIN 1D); GTP binding / GTPase  note ARABIDOPSIS DYNAMIN-RELATED PROTEIN 1D (ADL1D); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower; EXPRESSED DURING: M germinated pollen stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130), Dynamin, GTPase region (InterPro:IPR001401), Dynamin central region (InterPro:IPR000375); BEST Arabidopsis thaliana protein match is: ADL1E (ARABIDOPSIS DYNAMIN-LIKE 1E); GTP binding / GTPase (TAIR:AT3G60190.1); Has 2119 Blast hits to 2040 proteins in 247 species: Archae - 2; Bacteria - 35; Metazoa - 940; Fungi - 537; Plants - 319; Viruses - 0; Other Eukaryotes - 286 (source: NCBI BLink).  protein_id AT2G44590.3p  transcript_id AT2G44590.3  protein_id AT2G44590.3p  transcript_id AT2G44590.3  
At2g44600	chr2:018408845	0.0	W/18408845-18409786	AT2G44600.1  CDS  gene_syn F16B22.9  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60200.1); Has 34 Blast hits to 34 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G44600.1p  transcript_id AT2G44600.1  protein_id AT2G44600.1p  transcript_id AT2G44600.1  
At2g44610	chr2:018413767	0.0	C/18413767-18413883,18413151-18413221,18412965-18413053,18412680-18412791,18412205-18412295,18411778-18411924	AT2G44610.1  CDS  gene_syn ATRAB6A, ATRABH1B, F16B22.10, RAB6, RAB6A  gene RAB6A  function Encodes a GTP-binding protein with similarity to yeast YPT6 . RAB6 can complement the yeast YTP mutant.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane fraction|GO:0005624|8159788|IDA  go_process secretion by cell|GO:0032940|8159788|IGI  go_function protein binding|GO:0005515|18182439|IPI  go_function GTP binding|GO:0005525|8159788|IDA  go_function GTP binding|GO:0005525||ISS  product RAB6A; GTP binding / protein binding  note RAB6A; FUNCTIONS IN: protein binding, GTP binding; INVOLVED IN: secretion by cell; LOCATED IN: plasma membrane, membrane fraction; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab6-related (InterPro:IPR015600); BEST Arabidopsis thaliana protein match is: AtRABH1e (Arabidopsis Rab GTPase homolog H1e); GTP binding (TAIR:AT5G10260.1); Has 21396 Blast hits to 21369 proteins in 599 species: Archae - 17; Bacteria - 112; Metazoa - 12092; Fungi - 2452; Plants - 1836; Viruses - 19; Other Eukaryotes - 4868 (source: NCBI BLink).  protein_id AT2G44610.1p  transcript_id AT2G44610.1  protein_id AT2G44610.1p  transcript_id AT2G44610.1  
At2g44620	chr2:018414320	0.0	W/18414320-18414511,18414889-18415065	AT2G44620.1  CDS  gene_syn F16B22.11, MITOCHONDRIAL ACYL CARRIER PROTEIN 1, MTACP-1, MTACP1  gene MTACP-1  function Encodes a member of the mitochondrial acyl carrier protein (ACP) family. As part of the mitochondrial matrix, it is likely to be involved in fatty acid or lipoic acid biogenesis. Its acylated form is predominantly present in the mitochondrial membrane while the non-acylated form is soluble.  go_function acyl carrier activity|GO:0000036||IEA  go_function phosphopantetheine binding|GO:0031177||IEA  go_function cofactor binding|GO:0048037||IEA  go_component mitochondrion|GO:0005739|8016262|IDA  go_component mitochondrial matrix|GO:0005759|17406791|IEP  go_process fatty acid biosynthetic process|GO:0006633|8016262|IDA  go_process fatty acid biosynthetic process|GO:0006633||ISS  go_function acyl carrier activity|GO:0000036||ISS  product MTACP-1 (MITOCHONDRIAL ACYL CARRIER PROTEIN 1); acyl carrier/ cofactor binding / phosphopantetheine binding  note MITOCHONDRIAL ACYL CARRIER PROTEIN 1 (MTACP-1); FUNCTIONS IN: phosphopantetheine binding, acyl carrier activity, cofactor binding; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: mitochondrion, mitochondrial matrix; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphopantetheine-binding (InterPro:IPR006163), Acyl carrier protein (ACP) (InterPro:IPR003231), Acyl carrier protein-like (InterPro:IPR009081), Phosphopantetheine attachment site (InterPro:IPR006162); BEST Arabidopsis thaliana protein match is: mtACP2 (mitochondrial acyl carrier protein 2); acyl carrier/ metal ion binding (TAIR:AT1G65290.1); Has 5119 Blast hits to 5116 proteins in 1424 species: Archae - 0; Bacteria - 2819; Metazoa - 166; Fungi - 97; Plants - 232; Viruses - 2; Other Eukaryotes - 1803 (source: NCBI BLink).  protein_id AT2G44620.1p  transcript_id AT2G44620.1  protein_id AT2G44620.1p  transcript_id AT2G44620.1  
At2g44630	chr2:018415829	0.0	C/18415829-18416947	AT2G44630.1  CDS  gene_syn F16B22.12  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT2G44700.1); Has 1484 Blast hits to 1359 proteins in 104 species: Archae - 9; Bacteria - 70; Metazoa - 894; Fungi - 6; Plants - 450; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT2G44630.1p  transcript_id AT2G44630.1  protein_id AT2G44630.1p  transcript_id AT2G44630.1  
At2g44640	chr2:018417286	0.0	W/18417286-18417557,18417708-18417957,18418046-18418430,18418531-18418799,18418884-18419063	AT2G44640.1  CDS  gene_syn F16B22.13  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, plasma membrane, plastid, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PDE320 (PIGMENT DEFECTIVE 320) (TAIR:AT3G06960.1); Has 25 Blast hits to 24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G44640.1p  transcript_id AT2G44640.1  protein_id AT2G44640.1p  transcript_id AT2G44640.1  
At2g44650	chr2:018420417	0.0	C/18420417-18420510,18420266-18420324,18420132-18420182,18419942-18420007,18419814-18419864,18419690-18419719,18419521-18419589	AT2G44650.1  CDS  gene_syn CHL-CPN10, CHLOROPLAST CHAPERONIN 10, CPN10, F16B22.14  gene CHL-CPN10  function Encodes a chloroplast-localized chaperonin 10 whose mRNA is expressed in leaves and stems but not roots.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|11402030|IDA  go_process protein folding|GO:0006457|11402030|IDA  go_function chaperone binding|GO:0051087|11402030|ISS  product CHL-CPN10 (CHLOROPLAST CHAPERONIN 10); chaperone binding  note CHLOROPLAST CHAPERONIN 10 (CHL-CPN10); FUNCTIONS IN: chaperone binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Chaperonin Cpn10 (InterPro:IPR001476); BEST Arabidopsis thaliana protein match is: chloroplast chaperonin 10, putative (TAIR:AT3G60210.1); Has 840 Blast hits to 839 proteins in 218 species: Archae - 0; Bacteria - 417; Metazoa - 54; Fungi - 2; Plants - 94; Viruses - 0; Other Eukaryotes - 273 (source: NCBI BLink).  protein_id AT2G44650.1p  transcript_id AT2G44650.1  protein_id AT2G44650.1p  transcript_id AT2G44650.1  
At2g44660	chr2:018422102	0.0	C/18422102-18422827,18421582-18421788,18421264-18421501,18420832-18421181	AT2G44660.1  CDS  gene_syn F16B22.15  go_component endoplasmic reticulum membrane|GO:0005789||IEA  go_component endomembrane system|GO:0012505||IEA  go_function transferase activity, transferring hexosyl groups|GO:0016758||IEA  go_process biological_process|GO:0008150||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note transferase, transferring glycosyl groups / transferase, transferring hexosyl groups; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, endoplasmic reticulum membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyltransferase, ALG6/ALG8 (InterPro:IPR004856); BEST Arabidopsis thaliana protein match is: ALG6, ALG8 glycosyltransferase family protein (TAIR:AT5G38460.1); Has 493 Blast hits to 491 proteins in 126 species: Archae - 0; Bacteria - 6; Metazoa - 247; Fungi - 172; Plants - 32; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT2G44660.1p  transcript_id AT2G44660.1  protein_id AT2G44660.1p  transcript_id AT2G44660.1  
At2g44670	chr2:018425279	0.0	W/18425279-18425388,18425502-18425673	AT2G44670.1  CDS  gene_syn F16B22.16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product senescence-associated protein-related  note senescence-associated protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: senescence-associated protein-related (TAIR:AT4G17670.1); Has 283 Blast hits to 283 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 283; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G44670.1p  transcript_id AT2G44670.1  protein_id AT2G44670.1p  transcript_id AT2G44670.1  
At2g44680	chr2:018427944	0.0	C/18427944-18428166,18427631-18427849,18427436-18427545,18427200-18427365,18426898-18427031	AT2G44680.1  CDS  gene_syn CASEIN KINASE II BETA SUBUNIT 4, CKB4, F16B22.17  gene CKB4  function Encodes casein kinase II beta chain, a CK2 regulatory subunit. Nuclear-localized CKB4 protein exists in vivo as different isoforms, resulting from phosphorylation on serine residues. The phosphorylated isoforms are the preferred substrate for ubiquitination and degradation by the proteasome pathway. Involved in regulation of circadian clock.  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleus|GO:0005634|16709199|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component protein kinase CK2 complex|GO:0005956||ISS  go_process circadian rhythm|GO:0007623|17662034|IMP  go_process protein ubiquitination|GO:0016567|16709199|IDA  go_process positive regulation of circadian rhythm|GO:0042753|16709199|IMP  go_process photoperiodism, flowering|GO:0048573|17662034|IMP  go_function protein serine/threonine kinase activity|GO:0004674|16709199|IMP  product CKB4 (CASEIN KINASE II BETA SUBUNIT 4); protein serine/threonine kinase  note CASEIN KINASE II BETA SUBUNIT 4 (CKB4); FUNCTIONS IN: protein serine/threonine kinase activity; INVOLVED IN: photoperiodism, flowering, positive regulation of circadian rhythm, circadian rhythm, protein ubiquitination; LOCATED IN: protein kinase CK2 complex, nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Casein kinase II, regulatory subunit, alpha-helical (InterPro:IPR016149), Casein kinase II, regulatory subunit, beta-sheet (InterPro:IPR016150), Casein kinase II, regulatory subunit (InterPro:IPR000704); BEST Arabidopsis thaliana protein match is: CKB3; protein kinase regulator/ transcription factor binding (TAIR:AT3G60250.1); Has 859 Blast hits to 857 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 377; Fungi - 184; Plants - 110; Viruses - 0; Other Eukaryotes - 188 (source: NCBI BLink).  protein_id AT2G44680.1p  transcript_id AT2G44680.1  protein_id AT2G44680.1p  transcript_id AT2G44680.1  
At2g44680	chr2:018427944	0.0	C/18427944-18428166,18427631-18427849,18427436-18427545,18427203-18427365,18426898-18427031	AT2G44680.2  CDS  gene_syn CASEIN KINASE II BETA SUBUNIT 4, CKB4, F16B22.17  gene CKB4  function Encodes casein kinase II beta chain, a CK2 regulatory subunit. Nuclear-localized CKB4 protein exists in vivo as different isoforms, resulting from phosphorylation on serine residues. The phosphorylated isoforms are the preferred substrate for ubiquitination and degradation by the proteasome pathway. Involved in regulation of circadian clock.  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleus|GO:0005634|16709199|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component protein kinase CK2 complex|GO:0005956||ISS  go_process circadian rhythm|GO:0007623|17662034|IMP  go_process protein ubiquitination|GO:0016567|16709199|IDA  go_process positive regulation of circadian rhythm|GO:0042753|16709199|IMP  go_process photoperiodism, flowering|GO:0048573|17662034|IMP  go_function protein serine/threonine kinase activity|GO:0004674|16709199|IMP  product CKB4 (CASEIN KINASE II BETA SUBUNIT 4); protein serine/threonine kinase  note CASEIN KINASE II BETA SUBUNIT 4 (CKB4); FUNCTIONS IN: protein serine/threonine kinase activity; INVOLVED IN: photoperiodism, flowering, positive regulation of circadian rhythm, circadian rhythm, protein ubiquitination; LOCATED IN: protein kinase CK2 complex, nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Casein kinase II, regulatory subunit, alpha-helical (InterPro:IPR016149), Casein kinase II, regulatory subunit, beta-sheet (InterPro:IPR016150), Casein kinase II, regulatory subunit (InterPro:IPR000704); BEST Arabidopsis thaliana protein match is: CKB3; protein kinase regulator/ transcription factor binding (TAIR:AT3G60250.2); Has 859 Blast hits to 857 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 377; Fungi - 184; Plants - 110; Viruses - 0; Other Eukaryotes - 188 (source: NCBI BLink).  protein_id AT2G44680.2p  transcript_id AT2G44680.2  protein_id AT2G44680.2p  transcript_id AT2G44680.2  
At2g44690	chr2:018429276	0.0	W/18429276-18429410,18429496-18429583,18429829-18429938,18430039-18430102,18430208-18430272,18430368-18430433,18430535-18430636	AT2G44690.1  CDS  gene_syn ARAC9, ATROP8, F16B22.18, RHO-RELATED PROTEIN FROM PLANTS 8, ROP8  gene ARAC9  function A member of ROP GTPase gene family.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product ARAC9; GTP binding  note ARAC9; FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Ras small GTPase, Ras type (InterPro:IPR003577), Ras small GTPase, Rho type (InterPro:IPR003578); BEST Arabidopsis thaliana protein match is: ARAC3 (ARABIDOPSIS RAC-LIKE 3); GTP binding / GTPase (TAIR:AT4G35020.1); Has 19956 Blast hits to 19931 proteins in 570 species: Archae - 8; Bacteria - 52; Metazoa - 10939; Fungi - 2731; Plants - 1718; Viruses - 19; Other Eukaryotes - 4489 (source: NCBI BLink).  protein_id AT2G44690.1p  transcript_id AT2G44690.1  protein_id AT2G44690.1p  transcript_id AT2G44690.1  
At2g44700	chr2:018431015	0.0	W/18431015-18432121	AT2G44700.1  CDS  gene_syn F16B22.19  go_component chloroplast|GO:0009507||IEA  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT2G44630.1); Has 366 Blast hits to 354 proteins in 13 species: Archae - 0; Bacteria - 5; Metazoa - 2; Fungi - 0; Plants - 358; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G44700.1p  transcript_id AT2G44700.1  protein_id AT2G44700.1p  transcript_id AT2G44700.1  
At2g44710	chr2:018432902	0.0	W/18432902-18433181,18433482-18434038,18434122-18434211,18434303-18434542,18434827-18435048,18435123-18435480,18435586-18435899,18435992-18436095,18436188-18436291,18436388-18436458,18436540-18436629	AT2G44710.1  CDS  gene_syn F16B22.20  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT4G00830.2); Has 47292 Blast hits to 28612 proteins in 1155 species: Archae - 101; Bacteria - 5221; Metazoa - 22079; Fungi - 5075; Plants - 5572; Viruses - 985; Other Eukaryotes - 8259 (source: NCBI BLink).  protein_id AT2G44710.1p  transcript_id AT2G44710.1  protein_id AT2G44710.1p  transcript_id AT2G44710.1  
At2g44730	chr2:018437447	0.0	C/18437447-18438565	AT2G44730.1  CDS  gene_syn F16B22.22  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MADF domain (InterPro:IPR006578), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G24860.1); Has 399 Blast hits to 381 proteins in 63 species: Archae - 0; Bacteria - 28; Metazoa - 111; Fungi - 10; Plants - 205; Viruses - 8; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT2G44730.1p  transcript_id AT2G44730.1  protein_id AT2G44730.1p  transcript_id AT2G44730.1  
At2g44735	chr2:018438623	0.0	W/18438623-18438716,18438796-18438852,18439177-18439318,18439592-18440033,18440720-18440767,18440867-18440882,18441031-18441090,18441397-18441641	AT2G44735.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G18720.1); Has 51 Blast hits to 51 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G44735.1p  transcript_id AT2G44735.1  protein_id AT2G44735.1p  transcript_id AT2G44735.1  
At2g44740	chr2:018442964	0.0	C/18442964-18443304,18442287-18442554	AT2G44740.1  CDS  gene_syn CYCP4;1, F16B22.23, cyclin p4;1  gene CYCP4;1  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase activity|GO:0004693||ISS  product CYCP4;1 (cyclin p4;1); cyclin-dependent protein kinase  note cyclin p4;1 (CYCP4;1); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Negative regulatory factor PREG (InterPro:IPR012389), Cyclin-like (InterPro:IPR011028), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCP4;3 (cyclin p4;3); cyclin-dependent protein kinase (TAIR:AT5G07450.1); Has 1029 Blast hits to 996 proteins in 161 species: Archae - 0; Bacteria - 16; Metazoa - 208; Fungi - 454; Plants - 130; Viruses - 0; Other Eukaryotes - 221 (source: NCBI BLink).  protein_id AT2G44740.1p  transcript_id AT2G44740.1  protein_id AT2G44740.1p  transcript_id AT2G44740.1  
At2g44745	chr2:018448771	0.0	C/18448771-18449004,18448575-18448663,18448165-18448335,18447482-18447644	AT2G44745.1  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product WRKY family transcription factor  note WRKY family transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY13; transcription factor (TAIR:AT4G39410.1); Has 2021 Blast hits to 1730 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2003; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT2G44745.1p  transcript_id AT2G44745.1  protein_id AT2G44745.1p  transcript_id AT2G44745.1  
At2g44750	chr2:018451510	0.0	W/18451510-18451645,18451722-18451818,18451935-18452007,18452087-18452188,18452274-18452523,18452609-18452754	AT2G44750.2  CDS  gene_syn F16B22.24, TPK2, Thiamin pyrophosphokinase 2  gene TPK2  function Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine.  go_component cytosol|GO:0005829|17611796|IDA  go_process thiamin metabolic process|GO:0006772|17611796|IGI  go_process thiamin metabolic process|GO:0006772||ISS  go_function thiamin diphosphokinase activity|GO:0004788|17611796|IDA  go_function thiamin diphosphokinase activity|GO:0004788||ISS  product TPK2 (Thiamin pyrophosphokinase 2); thiamin diphosphokinase  note Thiamin pyrophosphokinase 2 (TPK2); FUNCTIONS IN: thiamin diphosphokinase activity; INVOLVED IN: thiamin metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Thiamin pyrophosphokinase, vitamin B1-binding region (InterPro:IPR007373), Thiamin pyrophosphokinase, eukaryotic (InterPro:IPR016966), Thiamin pyrophosphokinase (InterPro:IPR006282), Thiamin pyrophosphokinase, catalytic region (InterPro:IPR007371); BEST Arabidopsis thaliana protein match is: TPK1 (THIAMIN PYROPHOSPHOKINASE1); thiamin diphosphokinase (TAIR:AT1G02880.3); Has 853 Blast hits to 853 proteins in 306 species: Archae - 0; Bacteria - 343; Metazoa - 116; Fungi - 91; Plants - 46; Viruses - 0; Other Eukaryotes - 257 (source: NCBI BLink).  protein_id AT2G44750.2p  transcript_id AT2G44750.2  protein_id AT2G44750.2p  transcript_id AT2G44750.2  
At2g44750	chr2:018451510	0.0	W/18451510-18451645,18451722-18451818,18451935-18452007,18452087-18452188,18452280-18452523,18452609-18452754	AT2G44750.1  CDS  gene_syn F16B22.24, TPK2, Thiamin pyrophosphokinase 2  gene TPK2  function Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine.  go_component cytosol|GO:0005829|17611796|IDA  go_process thiamin metabolic process|GO:0006772|17611796|IGI  go_process thiamin metabolic process|GO:0006772||ISS  go_function thiamin diphosphokinase activity|GO:0004788|17611796|IDA  go_function thiamin diphosphokinase activity|GO:0004788||ISS  product TPK2 (Thiamin pyrophosphokinase 2); thiamin diphosphokinase  note Thiamin pyrophosphokinase 2 (TPK2); FUNCTIONS IN: thiamin diphosphokinase activity; INVOLVED IN: thiamin metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Thiamin pyrophosphokinase, vitamin B1-binding region (InterPro:IPR007373), Thiamin pyrophosphokinase, eukaryotic (InterPro:IPR016966), Thiamin pyrophosphokinase (InterPro:IPR006282), Thiamin pyrophosphokinase, catalytic region (InterPro:IPR007371); BEST Arabidopsis thaliana protein match is: TPK1 (THIAMIN PYROPHOSPHOKINASE1); thiamin diphosphokinase (TAIR:AT1G02880.3); Has 872 Blast hits to 872 proteins in 306 species: Archae - 0; Bacteria - 348; Metazoa - 116; Fungi - 91; Plants - 46; Viruses - 0; Other Eukaryotes - 271 (source: NCBI BLink).  protein_id AT2G44750.1p  transcript_id AT2G44750.1  protein_id AT2G44750.1p  transcript_id AT2G44750.1  
At2g44760	chr2:018454360	0.0	C/18454360-18454785,18453889-18454284,18453690-18453782,18453462-18453601,18452937-18453384	AT2G44760.1  CDS  gene_syn F16B22.25  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 17 Blast hits to 15 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G44760.1p  transcript_id AT2G44760.1  protein_id AT2G44760.1p  transcript_id AT2G44760.1  
At2g44770	chr2:018457817	0.0	W/18457817-18457901,18458168-18458277,18458427-18458495,18458684-18458799,18458882-18458936,18459121-18459241,18459425-18459472,18459591-18459685,18459785-18459886	AT2G44770.1  CDS  gene_syn F16B22.26  go_component cytoskeleton|GO:0005856||IEA  go_process phagocytosis|GO:0006909||IEA  go_function molecular_function|GO:0003674||ND  product phagocytosis and cell motility protein ELMO1-related  note phagocytosis and cell motility protein ELMO1-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: phagocytosis; LOCATED IN: cytoskeleton; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Engulfment and cell motility, ELMO (InterPro:IPR006816); BEST Arabidopsis thaliana protein match is: phagocytosis and cell motility protein ELMO1-related (TAIR:AT3G60260.4); Has 657 Blast hits to 657 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 436; Fungi - 33; Plants - 109; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT2G44770.1p  transcript_id AT2G44770.1  protein_id AT2G44770.1p  transcript_id AT2G44770.1  
At2g44780	chr2:018460687	0.0	C/18460687-18461194	AT2G44780.1  pseudogenic_transcript  pseudo  gene_syn F16B22.30  function Encodes a Uclacyanin/Basic blue family protein [pseudogene]  note pseudogene, blue copper-binding protein II  
At2g44790	chr2:018463061	0.0	C/18463061-18463232,18462182-18462618	AT2G44790.1  CDS  gene_syn F16B22.32, UCC2, UCLACYANIN 2  gene UCC2  function Encodes a uclacyanin, a protein precursor that is closely related to precursors of stellacyanins and a blue copper protein from pea pods.  go_component anchored to plasma membrane|GO:0046658|12805588|IDA  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function copper ion binding|GO:0005507||ISS  product UCC2 (UCLACYANIN 2); copper ion binding / electron carrier  note UCLACYANIN 2 (UCC2); FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to plasma membrane, anchored to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972), Blue (type 1) copper domain (InterPro:IPR000923); BEST Arabidopsis thaliana protein match is: UCC3 (UCLACYANIN 3); copper ion binding / electron carrier (TAIR:AT3G60280.1); Has 6798 Blast hits to 3551 proteins in 361 species: Archae - 17; Bacteria - 782; Metazoa - 1517; Fungi - 510; Plants - 2541; Viruses - 501; Other Eukaryotes - 930 (source: NCBI BLink).  protein_id AT2G44790.1p  transcript_id AT2G44790.1  protein_id AT2G44790.1p  transcript_id AT2G44790.1  
At2g44798	chr2:018466464	0.0	C/18466464-18469295	AT2G44798.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G44800  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G44798.1  
At2g44798	chr2:018466808	0.0	C/18466808-18471277	AT2G44798.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G44800  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G44798.2  
At2g44800	chr2:018467004	0.0	W/18467004-18467255,18467600-18467847,18467978-18468551	AT2G44800.1  CDS  gene_syn F16B22.29  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (TAIR:AT3G60290.1); Has 5814 Blast hits to 5787 proteins in 659 species: Archae - 0; Bacteria - 678; Metazoa - 98; Fungi - 639; Plants - 3076; Viruses - 0; Other Eukaryotes - 1323 (source: NCBI BLink).  protein_id AT2G44800.1p  transcript_id AT2G44800.1  protein_id AT2G44800.1p  transcript_id AT2G44800.1  
At2g44810	chr2:018479095	0.0	W/18479095-18480168	AT2G44810.1  CDS  gene_syn DAD1, DEFECTIVE ANTHER DEHISCENCE 1, F16B22.45  gene DAD1  function Mutant has defects in anther dehiscence, pollen maturation, and flower opening. The DAD1 protein is a chloroplastic phospholipase A1 that catalyzes the initial step of jasmonic acid biosynthesis.  go_component cytoplasm|GO:0005737|11595796|TAS  go_component chloroplast|GO:0009507|11595796|IDA  go_process lipid metabolic process|GO:0006629||ISS  go_process jasmonic acid biosynthetic process|GO:0009695|11595796|TAS  go_process anther dehiscence|GO:0009901|11595796|IMP  go_process pollen maturation|GO:0010152|11595796|IMP  go_function triacylglycerol lipase activity|GO:0004806||ISS  go_function phospholipase A1 activity|GO:0008970|11595796|IDA  product DAD1 (DEFECTIVE ANTHER DEHISCENCE 1); phospholipase A1/ triacylglycerol lipase  note DEFECTIVE ANTHER DEHISCENCE 1 (DAD1); FUNCTIONS IN: triacylglycerol lipase activity, phospholipase A1 activity; INVOLVED IN: pollen maturation, anther dehiscence, jasmonic acid biosynthetic process, lipid metabolic process; LOCATED IN: chloroplast, cytoplasm; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: lipase class 3 family protein (TAIR:AT4G16820.1); Has 1096 Blast hits to 1092 proteins in 193 species: Archae - 0; Bacteria - 163; Metazoa - 71; Fungi - 274; Plants - 319; Viruses - 6; Other Eukaryotes - 263 (source: NCBI BLink).  protein_id AT2G44810.1p  transcript_id AT2G44810.1  protein_id AT2G44810.1p  transcript_id AT2G44810.1  
At2g44820	chr2:018484690	0.0	W/18484690-18484795,18484883-18484953,18485031-18485117,18485197-18485517	AT2G44820.1  CDS  gene_syn F16B22.34, F16B22_34  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 4; Plants - 24; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT2G44820.1p  transcript_id AT2G44820.1  protein_id AT2G44820.1p  transcript_id AT2G44820.1  
At2g44820	chr2:018484690	0.0	W/18484690-18484795,18484883-18484953,18485031-18485117,18485197-18485517	AT2G44820.2  CDS  gene_syn F16B22.34, F16B22_34  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 4; Plants - 24; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT2G44820.2p  transcript_id AT2G44820.2  protein_id AT2G44820.2p  transcript_id AT2G44820.2  
At2g44830	chr2:018490398	0.0	W/18490398-18491794,18491879-18492779	AT2G44830.1  CDS  gene_syn T13E15.16  go_component nucleus|GO:0005634|14617066|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane, nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: D6PKL2 (D6 PROTEIN KINASE LIKE 2); kinase (TAIR:AT5G47750.1); Has 85028 Blast hits to 63714 proteins in 2338 species: Archae - 21; Bacteria - 7146; Metazoa - 39135; Fungi - 8586; Plants - 11696; Viruses - 326; Other Eukaryotes - 18118 (source: NCBI BLink).  protein_id AT2G44830.1p  transcript_id AT2G44830.1  protein_id AT2G44830.1p  transcript_id AT2G44830.1  
At2g44840	chr2:018495440	0.0	W/18495440-18496120	AT2G44840.1  CDS  gene_syn ATERF13, EREBP, ERF13, ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13, T13E15.15  gene ERF13  function encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS  go_process response to chitin|GO:0010200|17722694|IEP  go_function DNA binding|GO:0003677|17873090|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9687012|TAS  go_function transcription factor activity|GO:0003700||ISS  product ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13); DNA binding / transcription factor  note ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13 (ERF13); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: ethylene mediated signaling pathway, response to chitin, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1); DNA binding / transcription activator/ transcription factor (TAIR:AT4G17500.1); Has 3668 Blast hits to 3617 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3661; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT2G44840.1p  transcript_id AT2G44840.1  protein_id AT2G44840.1p  transcript_id AT2G44840.1  
At2g44850	chr2:018498672	0.0	W/18498672-18498683,18498887-18498996,18499085-18499204,18499359-18499415,18499920-18500823	AT2G44850.1  CDS  gene_syn T13E15.14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0565 (InterPro:IPR018881); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45380.1); Has 93 Blast hits to 93 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G44850.1p  transcript_id AT2G44850.1  protein_id AT2G44850.1p  transcript_id AT2G44850.1  
At2g44850	chr2:018499770	0.0	W/18499770-18499874,18499969-18500823	AT2G44850.2  CDS  gene_syn T13E15.14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0565 (InterPro:IPR018881).  protein_id AT2G44850.2p  transcript_id AT2G44850.2  protein_id AT2G44850.2p  transcript_id AT2G44850.2  
At2g44860	chr2:018502048	0.0	C/18502048-18502128,18501544-18501657,18501305-18501441,18501034-18501181	AT2G44860.1  CDS  gene_syn T13E15.13  go_component nucleolus|GO:0005730|15496452|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L24, putative  note 60S ribosomal protein L24, putative; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, ribosome, nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L24e (InterPro:IPR000988), TRASH (InterPro:IPR011017); BEST Arabidopsis thaliana protein match is: STV1 (SHORT VALVE1); structural constituent of ribosome (TAIR:AT3G53020.1); Has 1112 Blast hits to 1112 proteins in 287 species: Archae - 206; Bacteria - 6; Metazoa - 355; Fungi - 206; Plants - 121; Viruses - 0; Other Eukaryotes - 218 (source: NCBI BLink).  protein_id AT2G44860.1p  transcript_id AT2G44860.1  protein_id AT2G44860.1p  transcript_id AT2G44860.1  
At2g44860	chr2:018502048	0.0	C/18502048-18502128,18501544-18501657,18501305-18501441,18501034-18501181	AT2G44860.2  CDS  gene_syn T13E15.13  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L24, putative  note 60S ribosomal protein L24, putative; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, ribosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L24e (InterPro:IPR000988), TRASH (InterPro:IPR011017); BEST Arabidopsis thaliana protein match is: STV1 (SHORT VALVE1); structural constituent of ribosome (TAIR:AT3G53020.1); Has 1112 Blast hits to 1112 proteins in 287 species: Archae - 206; Bacteria - 6; Metazoa - 355; Fungi - 206; Plants - 121; Viruses - 0; Other Eukaryotes - 218 (source: NCBI BLink).  protein_id AT2G44860.2p  transcript_id AT2G44860.2  protein_id AT2G44860.2p  transcript_id AT2G44860.2  
At2g44870	chr2:018503250	0.0	W/18503250-18503609,18503792-18503845,18503988-18504113,18504216-18504422	AT2G44870.1  CDS  gene_syn T13E15.12  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; Has 26 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G44870.1p  transcript_id AT2G44870.1  protein_id AT2G44870.1p  transcript_id AT2G44870.1  
At2g44880	chr2:018505239	0.0	W/18505239-18506906	AT2G44880.1  CDS  gene_syn T13E15.11  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G29230.1); Has 12671 Blast hits to 4919 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 33; Plants - 12430; Viruses - 0; Other Eukaryotes - 200 (source: NCBI BLink).  protein_id AT2G44880.1p  transcript_id AT2G44880.1  protein_id AT2G44880.1p  transcript_id AT2G44880.1  
At2g44890	chr2:018509787	0.0	C/18509787-18510290,18509415-18509699,18508994-18509332,18508676-18508876,18508392-18508580	AT2G44890.1  CDS  gene_syn CYP704A1, T13E15.10  gene CYP704A1  function member of CYP704A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP704A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP704A1; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP704A2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT2G45510.1); Has 21176 Blast hits to 21106 proteins in 1100 species: Archae - 19; Bacteria - 1543; Metazoa - 9667; Fungi - 4059; Plants - 5025; Viruses - 3; Other Eukaryotes - 860 (source: NCBI BLink).  protein_id AT2G44890.1p  transcript_id AT2G44890.1  protein_id AT2G44890.1p  transcript_id AT2G44890.1  
At2g44900	chr2:018514383	0.0	C/18514383-18515762,18514121-18514279,18513959-18514039,18513537-18513668,18513244-18513459,18513066-18513160,18512743-18512806,18512489-18512664,18512174-18512401,18511993-18512077,18511719-18511895	AT2G44900.1  CDS  gene_syn T13E15.9  function ARABIDILLO-1 and its homolog, ARABIDILLO -2, are unique among Arabidopsis Arm-repeat proteins in having an F-box motif and fall into a phylogenetically distinct subgroup from other plant Arm-repeat proteins Similar to arm repeat protein in rice and armadillo/beta-catenin repeat family protein / F-box family protein in Dictyostelium. ARABIDILLO-1 promote lateral root development. Mutant plants form fewer lateral roots, while ARABIDILLO-1-overexpressing lines produce more lateral roots than wild-type seedlings.  go_function binding|GO:0005488||IEA  go_component nucleus|GO:0005634|16434475|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_process lateral root development|GO:0048527|16434475|IGI  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product armadillo/beta-catenin repeat family protein / F-box family protein  note armadillo/beta-catenin repeat family protein / F-box family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: lateral root development, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein / F-box family protein (TAIR:AT3G60350.1); Has 6880 Blast hits to 3678 proteins in 213 species: Archae - 0; Bacteria - 16; Metazoa - 3582; Fungi - 500; Plants - 2076; Viruses - 0; Other Eukaryotes - 706 (source: NCBI BLink).  protein_id AT2G44900.1p  transcript_id AT2G44900.1  protein_id AT2G44900.1p  transcript_id AT2G44900.1  
At2g44910	chr2:018519324	0.0	C/18519324-18519525,18518776-18519134,18518536-18518615,18517887-18518202	AT2G44910.1  CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4, ATHB-4, ATHB4, T13E15.8  gene ATHB4  function Encodes a homeodomain protein whose expression displays a dependence on phyB for both red and far-red light response. Also involved in the shade avoidance syndrome.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process shade avoidance|GO:0009641|16565297|IEP  go_process response to hormone stimulus|GO:0009725|19392702|IMP  go_process response to far red light|GO:0010218|8106086|IEP  go_process regulation of gene-specific transcription|GO:0032583|19392702|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ATHB4 (ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4); DNA binding / transcription factor  note ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4 (ATHB4); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to far red light, regulation of transcription, DNA-dependent, shade avoidance; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: HD-ZIP protein, N-terminal (InterPro:IPR006712), Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: HAT3 (HOMEOBOX-LEUCINE ZIPPER PROTEIN 3); transcription factor (TAIR:AT3G60390.1); Has 7253 Blast hits to 7206 proteins in 435 species: Archae - 0; Bacteria - 2; Metazoa - 5463; Fungi - 176; Plants - 1472; Viruses - 4; Other Eukaryotes - 136 (source: NCBI BLink).  protein_id AT2G44910.1p  transcript_id AT2G44910.1  protein_id AT2G44910.1p  transcript_id AT2G44910.1  
At2g44920	chr2:018524419	0.0	W/18524419-18524535,18524887-18525018,18525513-18525608,18525731-18525803,18525901-18525962,18526084-18526165,18526278-18526338,18526451-18526502	AT2G44920.2  CDS  gene_syn T13E15.7  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  go_function molecular_function|GO:0003674||ND  product thylakoid lumenal 15 kDa protein, chloroplast  note thylakoid lumenal 15 kDa protein, chloroplast; FUNCTIONS IN: molecular_function unknown; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentapeptide repeat (InterPro:IPR001646); BEST Arabidopsis thaliana protein match is: thylakoid lumenal protein-related (TAIR:AT1G12250.2); Has 11947 Blast hits to 4967 proteins in 589 species: Archae - 251; Bacteria - 8237; Metazoa - 244; Fungi - 2; Plants - 139; Viruses - 34; Other Eukaryotes - 3040 (source: NCBI BLink).  protein_id AT2G44920.2p  transcript_id AT2G44920.2  protein_id AT2G44920.2p  transcript_id AT2G44920.2  
At2g44920	chr2:018524419	0.0	W/18524419-18524535,18524887-18525018,18525513-18525608,18525731-18525803,18525901-18525962,18526084-18526236	AT2G44920.1  CDS  gene_syn T13E15.7  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  go_function molecular_function|GO:0003674||ND  product thylakoid lumenal 15 kDa protein, chloroplast  note thylakoid lumenal 15 kDa protein, chloroplast; FUNCTIONS IN: molecular_function unknown; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentapeptide repeat (InterPro:IPR001646); BEST Arabidopsis thaliana protein match is: FIP2; protein binding / voltage-gated potassium channel (TAIR:AT5G55000.2); Has 11151 Blast hits to 4483 proteins in 547 species: Archae - 249; Bacteria - 7924; Metazoa - 163; Fungi - 0; Plants - 88; Viruses - 46; Other Eukaryotes - 2681 (source: NCBI BLink).  protein_id AT2G44920.1p  transcript_id AT2G44920.1  protein_id AT2G44920.1p  transcript_id AT2G44920.1  
At2g44925	chr2:018527934	0.0	W/18527934-18528131	AT2G44925.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G44925.1p  transcript_id AT2G44925.1  protein_id AT2G44925.1p  transcript_id AT2G44925.1  
At2g44930	chr2:018531663	0.0	C/18531663-18531671,18531116-18531489,18530124-18530971,18529700-18530016	AT2G44930.1  CDS  gene_syn T13E15.6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf apex, flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28580.1); Has 459 Blast hits to 435 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 459; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G44930.1p  transcript_id AT2G44930.1  protein_id AT2G44930.1p  transcript_id AT2G44930.1  
At2g44940	chr2:018537294	0.0	W/18537294-18538181	AT2G44940.1  CDS  gene_syn T13E15.25  function encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor TINY, putative  note AP2 domain-containing transcription factor TINY, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor TINY, putative (TAIR:AT3G60490.1); Has 4529 Blast hits to 4030 proteins in 265 species: Archae - 0; Bacteria - 75; Metazoa - 232; Fungi - 113; Plants - 3876; Viruses - 0; Other Eukaryotes - 233 (source: NCBI BLink).  protein_id AT2G44940.1p  transcript_id AT2G44940.1  protein_id AT2G44940.1p  transcript_id AT2G44940.1  
At2g44950	chr2:018548131	0.0	C/18548131-18548247,18547789-18547950,18547627-18547705,18547280-18547507,18547020-18547181,18546096-18546289,18545937-18546020,18545692-18545811,18545409-18545595,18545158-18545318,18545004-18545075,18544714-18544790,18544146-18544340,18543962-18544034,18543783-18543869,18543407-18543544,18543119-18543321,18542859-18543024,18542602-18542733	AT2G44950.1  CDS  gene_syn AT2G44960, HISTONE MONO-UBIQUITINATION 1, HUB1, RDO4, REDUCED DORMANCY 4, T14P1.25, T14P1_25  gene HUB1  function The gene encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B.  go_process seed dormancy|GO:0010162|12121467|IMP  go_component nucleus|GO:0005634|17329563|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process protein monoubiquitination|GO:0006513|17329565|IDA  go_process defense response to fungus, incompatible interaction|GO:0009817|19286969|IMP  go_process leaf morphogenesis|GO:0009965|17329565|IMP  go_process seed dormancy|GO:0010162|17329563|IMP  go_process vegetative to reproductive phase transition|GO:0010228|18849490|IMP  go_process regulation of G2/M transition of mitotic cell cycle|GO:0010389|17329565|IMP  go_process histone monoubiquitination|GO:0010390|17329563|IMP  go_process cell growth|GO:0016049|17329565|IMP  go_process histone H2B ubiquitination|GO:0033523|18849490|IMP  go_process regulation of timing of cell differentiation|GO:0048505|17329565|IMP  go_process cell division|GO:0051301|17329565|IMP  go_function ubiquitin-protein ligase activity|GO:0004842|17329565|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  go_function protein homodimerization activity|GO:0042803|18849490|IPI  product HUB1 (HISTONE MONO-UBIQUITINATION 1); protein binding / protein homodimerization/ ubiquitin-protein ligase/ zinc ion binding  note HISTONE MONO-UBIQUITINATION 1 (HUB1); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, protein homodimerization activity, zinc ion binding; INVOLVED IN: in 11 processes; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: HUB2 (HISTONE MONO-UBIQUITINATION 2); protein binding / zinc ion binding (TAIR:AT1G55250.1); Has 31428 Blast hits to 18573 proteins in 1209 species: Archae - 442; Bacteria - 2585; Metazoa - 17700; Fungi - 2611; Plants - 1371; Viruses - 121; Other Eukaryotes - 6598 (source: NCBI BLink).  protein_id AT2G44950.1p  transcript_id AT2G44950.1  protein_id AT2G44950.1p  transcript_id AT2G44950.1  
At2g44970	chr2:018551984	0.0	C/18551984-18552019,18551444-18551506,18551082-18551208,18550661-18550904,18550367-18550495,18550206-18550255,18550023-18550120,18549655-18549942,18548999-18549472	AT2G44970.2  CDS  gene_syn T14P1.23, T14P1_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product lipase-related  note lipase-related; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 120 Blast hits to 120 proteins in 35 species: Archae - 0; Bacteria - 47; Metazoa - 0; Fungi - 4; Plants - 61; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT2G44970.2p  transcript_id AT2G44970.2  protein_id AT2G44970.2p  transcript_id AT2G44970.2  
At2g44970	chr2:018551984	0.0	C/18551984-18552019,18551444-18551506,18551082-18551208,18550661-18550907,18550367-18550495,18550206-18550255,18550023-18550120,18549655-18549942,18548999-18549472	AT2G44970.1  CDS  gene_syn T14P1.23, T14P1_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product lipase-related  note lipase-related; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 120 Blast hits to 120 proteins in 35 species: Archae - 0; Bacteria - 47; Metazoa - 0; Fungi - 4; Plants - 61; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT2G44970.1p  transcript_id AT2G44970.1  protein_id AT2G44970.1p  transcript_id AT2G44970.1  
At2g44980	chr2:018556447	0.0	C/18556447-18556669,18556154-18556243,18555905-18556056,18555641-18555772,18555238-18555418,18554986-18555121,18554769-18554886,18554570-18554659,18554378-18554485,18554096-18554296,18553849-18553974,18553147-18553772,18552930-18553075,18552685-18552849,18552444-18552558,18552343-18552367	AT2G44980.2  CDS  gene_syn T14P1.22  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function DNA binding|GO:0003677||ISS  go_function helicase activity|GO:0004386||ISS  go_function ATP binding|GO:0005524||ISS  go_function transcription regulator activity|GO:0030528||ISS  product transcription regulatory protein SNF2, putative  note transcription regulatory protein SNF2, putative; FUNCTIONS IN: transcription regulator activity, helicase activity, DNA binding, nucleic acid binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: CHR5 (chromatin remodeling 5); ATP binding / DNA binding / chromatin binding / helicase/ nucleic acid binding (TAIR:AT2G13370.1); Has 11886 Blast hits to 10146 proteins in 1092 species: Archae - 65; Bacteria - 2577; Metazoa - 3139; Fungi - 2680; Plants - 795; Viruses - 119; Other Eukaryotes - 2511 (source: NCBI BLink).  protein_id AT2G44980.2p  transcript_id AT2G44980.2  protein_id AT2G44980.2p  transcript_id AT2G44980.2  
At2g44980	chr2:018556447	0.0	C/18556447-18556669,18556154-18556243,18555923-18556056,18555641-18555772,18555247-18555418,18554986-18555121,18554769-18554886,18554570-18554659,18554378-18554485,18554206-18554296,18554096-18554175,18553849-18553974,18553147-18553772,18552930-18553075,18552685-18552849,18552440-18552558	AT2G44980.1  CDS  gene_syn T14P1.22  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function DNA binding|GO:0003677||ISS  go_function helicase activity|GO:0004386||ISS  go_function ATP binding|GO:0005524||ISS  go_function transcription regulator activity|GO:0030528||ISS  product transcription regulatory protein SNF2, putative  note transcription regulatory protein SNF2, putative; FUNCTIONS IN: transcription regulator activity, helicase activity, DNA binding, ATP binding, nucleic acid binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: CHR5 (chromatin remodeling 5); ATP binding / DNA binding / chromatin binding / helicase/ nucleic acid binding (TAIR:AT2G13370.1); Has 12166 Blast hits to 10311 proteins in 1092 species: Archae - 76; Bacteria - 2622; Metazoa - 3225; Fungi - 2721; Plants - 807; Viruses - 127; Other Eukaryotes - 2588 (source: NCBI BLink).  protein_id AT2G44980.1p  transcript_id AT2G44980.1  protein_id AT2G44980.1p  transcript_id AT2G44980.1  
At2g44990	chr2:018558938	0.0	W/18558938-18559697,18559824-18559952,18560039-18560170,18560277-18560552,18560680-18561095,18561190-18561269,18561525-18561621	AT2G44990.1  CDS  gene_syn ATCCD7, CAROTENOID CLEAVAGE DIOXYGENASE 7, CCD7, MAX3, T14P1.21  gene CCD7  function More Axillary Branching; carotenoid cleavage dioxygenases.  go_component plastid|GO:0009536|16507088|IDA  go_component chloroplast stroma|GO:0009570|15268852|IDA  go_process auxin polar transport|GO:0009926|16546078|IMP  go_process secondary shoot formation|GO:0010223|16507088|IGI  go_process carotene catabolic process|GO:0016121|15268852|IDA  go_process xanthophyll catabolic process|GO:0016124|15268852|IDA  go_function 9-cis-epoxycarotenoid dioxygenase activity|GO:0045549|15268852|IDA  product CCD7 (CAROTENOID CLEAVAGE DIOXYGENASE 7); 9-cis-epoxycarotenoid dioxygenase  note CAROTENOID CLEAVAGE DIOXYGENASE 7 (CCD7); FUNCTIONS IN: 9-cis-epoxycarotenoid dioxygenase activity; INVOLVED IN: xanthophyll catabolic process, carotene catabolic process, secondary shoot formation, auxin polar transport; LOCATED IN: chloroplast stroma, plastid; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: NCED6 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 6); 9-cis-epoxycarotenoid dioxygenase (TAIR:AT3G24220.1); Has 1487 Blast hits to 1446 proteins in 289 species: Archae - 4; Bacteria - 512; Metazoa - 84; Fungi - 65; Plants - 358; Viruses - 0; Other Eukaryotes - 464 (source: NCBI BLink).  protein_id AT2G44990.1p  transcript_id AT2G44990.1  protein_id AT2G44990.1p  transcript_id AT2G44990.1  
At2g44995	chr2:018562102	0.0	W/18562102-18563678	AT2G44995.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G44995.1  
At2g45000	chr2:018564156	0.0	W/18564156-18565626,18565917-18566004,18566124-18566199,18566283-18566405,18566574-18566651,18566904-18567007,18567187-18567274,18567354-18567452,18567540-18567632	AT2G45000.1  CDS  gene_syn EMB2766, EMBRYO DEFECTIVE 2766, T14P1.20  gene EMB2766  go_component nuclear pore|GO:0005643||IEA  go_component chloroplast|GO:0009507||IEA  go_function structural constituent of nuclear pore|GO:0017056||IEA  go_process biological_process|GO:0008150||ND  product EMB2766 (EMBRYO DEFECTIVE 2766); structural constituent of nuclear pore  note EMBRYO DEFECTIVE 2766 (EMB2766); FUNCTIONS IN: structural constituent of nuclear pore; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, nuclear pore; CONTAINS InterPro DOMAIN/s: Nucleoporin, Nsp1-like, C-terminal (InterPro:IPR007758); Has 196388 Blast hits to 74057 proteins in 2349 species: Archae - 657; Bacteria - 41194; Metazoa - 62656; Fungi - 37422; Plants - 6443; Viruses - 2462; Other Eukaryotes - 45554 (source: NCBI BLink).  protein_id AT2G45000.1p  transcript_id AT2G45000.1  protein_id AT2G45000.1p  transcript_id AT2G45000.1  
At2g45010	chr2:018568045	0.0	W/18568045-18568155,18568755-18568869,18569029-18569297,18569376-18569615	AT2G45010.1  CDS  gene_syn T14P1.19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G51400.1); Has 322 Blast hits to 321 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 15; Plants - 299; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G45010.1p  transcript_id AT2G45010.1  protein_id AT2G45010.1p  transcript_id AT2G45010.1  
At2g45010	chr2:018568782	0.0	W/18568782-18568869,18569029-18569297,18569376-18569615	AT2G45010.2  CDS  gene_syn T14P1.19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G51400.1); Has 320 Blast hits to 319 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 15; Plants - 299; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G45010.2p  transcript_id AT2G45010.2  protein_id AT2G45010.2p  transcript_id AT2G45010.2  
At2g45020	chr2:018569911	0.0	W/18569911-18569983	AT2G45020.1  tRNA  gene_syn 44465.TRNA-ARG-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: TCT)  transcript_id AT2G45020.1  
At2g45023	chr2:018570156	0.0	C/18570156-18572173	AT2G45023.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G45023.1  
At2g45030	chr2:018572411	0.0	W/18572411-18572812,18572958-18573179,18573278-18573399,18573492-18573642,18573945-18574016,18574156-18574251,18574316-18574404,18574535-18574601,18574851-18574889,18574994-18575054,18575162-18575271,18575368-18575442,18575542-18575610,18575704-18575825,18575909-18576034,18576150-18576371,18576462-18576522,18576598-18576756	AT2G45030.1  CDS  gene_syn T14P1.16  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function translation elongation factor activity|GO:0003746||IEA  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function translation elongation factor activity|GO:0003746||ISS  go_function translation factor activity, nucleic acid binding|GO:0008135||ISS  product mitochondrial elongation factor, putative  note mitochondrial elongation factor, putative; FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, translation elongation factor activity, GTPase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EFG/EF2, domain IV (InterPro:IPR005517), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Translation elongation factor EFG/EF2 (InterPro:IPR004540), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721), Elongation factor G, III and V (InterPro:IPR009022), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: mitochondrial elongation factor, putative (TAIR:AT1G45332.1); Has 58323 Blast hits to 51089 proteins in 6911 species: Archae - 601; Bacteria - 26902; Metazoa - 5913; Fungi - 4987; Plants - 1036; Viruses - 0; Other Eukaryotes - 18884 (source: NCBI BLink).  protein_id AT2G45030.1p  transcript_id AT2G45030.1  protein_id AT2G45030.1p  transcript_id AT2G45030.1  
At2g45040	chr2:018577693	0.0	W/18577693-18578721	AT2G45040.1  CDS  gene_syn T14P1.15  go_process proteolysis|GO:0006508||IEA  go_process metabolic process|GO:0008152||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_function metallopeptidase activity|GO:0008237||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process proteolysis|GO:0006508||ISS  go_function metalloendopeptidase activity|GO:0004222||ISS  product matrix metalloproteinase  note matrix metalloproteinase; FUNCTIONS IN: metallopeptidase activity, metalloendopeptidase activity; INVOLVED IN: proteolysis, metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase M10A and M12B, matrixin and adamalysin (InterPro:IPR001818), Peptidoglycan binding-like (InterPro:IPR002477), Peptidase, metallopeptidases (InterPro:IPR006026); BEST Arabidopsis thaliana protein match is: matrix metalloproteinase, putative (TAIR:AT4G16640.1); Has 2158 Blast hits to 1979 proteins in 152 species: Archae - 2; Bacteria - 47; Metazoa - 1902; Fungi - 3; Plants - 81; Viruses - 39; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT2G45040.1p  transcript_id AT2G45040.1  protein_id AT2G45040.1p  transcript_id AT2G45040.1  
At2g45050	chr2:018582958	0.0	W/18582958-18583173,18583267-18583845	AT2G45050.1  CDS  gene_syn T14P1.14  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product zinc finger (GATA type) family protein  note zinc finger (GATA type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: leaf lamina base, petal, root, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: zinc finger (GATA type) family protein (TAIR:AT3G60530.1); Has 1016 Blast hits to 999 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 96; Fungi - 438; Plants - 427; Viruses - 3; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT2G45050.1p  transcript_id AT2G45050.1  protein_id AT2G45050.1p  transcript_id AT2G45050.1  
At2g45060	chr2:018586419	0.0	C/18586419-18586688,18586223-18586289,18586063-18586140,18585920-18585972,18585745-18585828,18585244-18585296,18585089-18585153,18584907-18584965,18584674-18584763	AT2G45060.1  CDS  gene_syn T14P1.13  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP022280 (InterPro:IPR016803); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26410.1); Has 50 Blast hits to 50 proteins in 14 species: Archae - 0; Bacteria - 4; Metazoa - 5; Fungi - 2; Plants - 38; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G45060.1p  transcript_id AT2G45060.1  protein_id AT2G45060.1p  transcript_id AT2G45060.1  
At2g45070	chr2:018587208	0.0	C/18587208-18587456	AT2G45070.1  CDS  gene_syn SEC 61 BETA SUBUNIT, SEC61 BETA, T14P1.12  gene SEC61 BETA  function Sec61 Beta Subunit  go_process protein transport|GO:0015031||ISS  go_function protein transporter activity|GO:0008565||ISS  product SEC61 BETA; protein transporter  note SEC61 BETA; FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein transport; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Preprotein translocase Sec, Sec61-beta subunit, eukarya (InterPro:IPR016482), Preprotein translocase Sec, Sec61-beta subunit (InterPro:IPR005609); BEST Arabidopsis thaliana protein match is: sec61beta family protein (TAIR:AT3G60540.2); Has 281 Blast hits to 281 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 77; Plants - 69; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT2G45070.1p  transcript_id AT2G45070.1  protein_id AT2G45070.1p  transcript_id AT2G45070.1  
At2g45070	chr2:018587208	0.0	C/18587208-18587456	AT2G45070.2  CDS  gene_syn SEC 61 BETA SUBUNIT, SEC61 BETA, T14P1.12  gene SEC61 BETA  function Sec61 Beta Subunit  go_process protein transport|GO:0015031||ISS  go_function protein transporter activity|GO:0008565||ISS  product SEC61 BETA; protein transporter  note SEC61 BETA; FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein transport; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Preprotein translocase Sec, Sec61-beta subunit, eukarya (InterPro:IPR016482), Preprotein translocase Sec, Sec61-beta subunit (InterPro:IPR005609); BEST Arabidopsis thaliana protein match is: sec61beta family protein (TAIR:AT3G60540.2); Has 281 Blast hits to 281 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 77; Plants - 69; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT2G45070.2p  transcript_id AT2G45070.2  protein_id AT2G45070.2p  transcript_id AT2G45070.2  
At2g45070	chr2:018587208	0.0	C/18587208-18587456	AT2G45070.3  CDS  gene_syn SEC 61 BETA SUBUNIT, SEC61 BETA, T14P1.12  gene SEC61 BETA  function Sec61 Beta Subunit  go_process protein transport|GO:0015031||ISS  go_function protein transporter activity|GO:0008565||ISS  product SEC61 BETA; protein transporter  note SEC61 BETA; FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein transport; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Preprotein translocase Sec, Sec61-beta subunit, eukarya (InterPro:IPR016482), Preprotein translocase Sec, Sec61-beta subunit (InterPro:IPR005609); BEST Arabidopsis thaliana protein match is: sec61beta family protein (TAIR:AT3G60540.2); Has 281 Blast hits to 281 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 77; Plants - 69; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT2G45070.3p  transcript_id AT2G45070.3  protein_id AT2G45070.3p  transcript_id AT2G45070.3  
At2g45070	chr2:018587208	0.0	C/18587208-18587456	AT2G45070.4  CDS  gene_syn SEC 61 BETA SUBUNIT, SEC61 BETA, T14P1.12  gene SEC61 BETA  function Sec61 Beta Subunit  go_process protein transport|GO:0015031||ISS  go_function protein transporter activity|GO:0008565||ISS  product SEC61 BETA; protein transporter  note SEC61 BETA; FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein transport; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Preprotein translocase Sec, Sec61-beta subunit, eukarya (InterPro:IPR016482), Preprotein translocase Sec, Sec61-beta subunit (InterPro:IPR005609); BEST Arabidopsis thaliana protein match is: sec61beta family protein (TAIR:AT3G60540.2); Has 281 Blast hits to 281 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 77; Plants - 69; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT2G45070.4p  transcript_id AT2G45070.4  protein_id AT2G45070.4p  transcript_id AT2G45070.4  
At2g45080	chr2:018591688	0.0	W/18591688-18592079,18592167-18592443	AT2G45080.1  CDS  gene_syn T14P1.11, cyclin p3;1, cycp3;1  gene cycp3;1  go_component cellular_component|GO:0005575||ND  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase activity|GO:0004693||ISS  product cycp3;1 (cyclin p3;1); cyclin-dependent protein kinase  note cyclin p3;1 (cycp3;1); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Negative regulatory factor PREG (InterPro:IPR012389), Cyclin-like (InterPro:IPR011028), Cyclin, N-terminal (InterPro:IPR006671), Cyclin-related 2 (InterPro:IPR013922), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCP3;2 (cyclin p3;2); cyclin-dependent protein kinase (TAIR:AT3G60550.1); Has 897 Blast hits to 897 proteins in 157 species: Archae - 0; Bacteria - 16; Metazoa - 149; Fungi - 390; Plants - 128; Viruses - 0; Other Eukaryotes - 214 (source: NCBI BLink).  protein_id AT2G45080.1p  transcript_id AT2G45080.1  protein_id AT2G45080.1p  transcript_id AT2G45080.1  
At2g45090	chr2:018593612	0.0	C/18593612-18594813	AT2G45090.1  pseudogenic_transcript  pseudo  gene_syn T14P1.10  note pseudogene, similar to receptor kinase 5, contains a protein kinase domain (PS50011); contains a S-locus glycoprotein family domain (PF00954); blastp match of 76% identity and 3.7e-52 P-value to GP|16040952|dbj|BAB69683.1||AB041621 receptor kinase 5 {Brassica rapa}  
At2g45100	chr2:018598027	0.0	C/18598027-18598088,18597872-18597953,18597723-18597798,18597484-18597649,18597342-18597398,18597132-18597244,18596973-18597055,18596796-18596882,18596484-18596717,18596289-18596405,18596162-18596215,18595988-18596068,18595702-18595887,18595348-18595623	AT2G45100.1  CDS  gene_syn T14P1.9  go_component nucleus|GO:0005634||IEA  go_component transcription factor complex|GO:0005667||IEA  go_process transcription initiation|GO:0006352||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process translational initiation|GO:0006413||IEA  go_process positive regulation of transcription|GO:0045941||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function transcription activator activity|GO:0016563||IEA  go_function transcription regulator activity|GO:0030528||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||ISS  product RNA polymerase II transcription factor/ protein binding / transcription activator/ transcription regulator/ translation initiation factor/ zinc ion binding  note RNA polymerase II transcription factor/ protein binding / transcription activator/ transcription regulator/ translation initiation factor/ zinc ion binding; FUNCTIONS IN: in 6 functions; INVOLVED IN: translational initiation, positive regulation of transcription, regulation of transcription, DNA-dependent, transcription initiation; LOCATED IN: transcription factor complex, nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Cyclin-like (InterPro:IPR011028), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-related (InterPro:IPR013763), Cyclin (InterPro:IPR006670), Brf1-like TBP-binding (InterPro:IPR011665); BEST Arabidopsis thaliana protein match is: RNA polymerase II transcription factor/ protein binding / transcription activator/ transcription regulator/ translation initiation factor/ zinc ion binding (TAIR:AT3G09360.1); Has 2547 Blast hits to 2023 proteins in 288 species: Archae - 304; Bacteria - 20; Metazoa - 856; Fungi - 260; Plants - 71; Viruses - 25; Other Eukaryotes - 1011 (source: NCBI BLink).  protein_id AT2G45100.1p  transcript_id AT2G45100.1  protein_id AT2G45100.1p  transcript_id AT2G45100.1  
At2g45110	chr2:018599575	0.0	W/18599575-18599725,18599844-18599956,18600360-18600553,18600916-18601237	AT2G45110.1  CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN B4, ATEXPB4, ATHEXP BETA 1.1, EXPANSIN B4, EXPB4, T14P1.8  gene ATEXPB4  function member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828||ISS  go_process plant-type cell wall modification during multidimensional cell growth|GO:0009831||ISS  product ATEXPB4 (ARABIDOPSIS THALIANA EXPANSIN B4)  note ARABIDOPSIS THALIANA EXPANSIN B4 (ATEXPB4); INVOLVED IN: plant-type cell wall modification during multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65681.1); Has 1460 Blast hits to 1459 proteins in 146 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 24; Plants - 1404; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT2G45110.1p  transcript_id AT2G45110.1  protein_id AT2G45110.1p  transcript_id AT2G45110.1  
At2g45120	chr2:018603680	0.0	W/18603680-18604624	AT2G45120.1  CDS  gene_syn T14P1.7  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT3G60580.1); Has 2160 Blast hits to 2024 proteins in 149 species: Archae - 0; Bacteria - 8; Metazoa - 1372; Fungi - 66; Plants - 537; Viruses - 18; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT2G45120.1p  transcript_id AT2G45120.1  protein_id AT2G45120.1p  transcript_id AT2G45120.1  
At2g45126	chr2:018605871	0.0	C/18605871-18605963	AT2G45126.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G45126.1p  transcript_id AT2G45126.1  protein_id AT2G45126.1p  transcript_id AT2G45126.1  
At2g45130	chr2:018606489	0.0	W/18606489-18606695,18607143-18607293,18607375-18607754	AT2G45130.1  CDS  gene_syn ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, ATSPX3, SPX DOMAIN GENE 3, SPX3, T14P1.6  gene SPX3  go_component cellular_component|GO:0005575||ND  go_process cellular response to phosphate starvation|GO:0016036|18315545|IEP  go_process positive regulation of cellular response to phosphate starvation|GO:0080040|18315545|IMP  go_function molecular_function|GO:0003674||ND  product SPX3 (SPX DOMAIN GENE 3)  note SPX DOMAIN GENE 3 (SPX3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: SPX1 (SPX DOMAIN GENE 1) (TAIR:AT5G20150.1); Has 647 Blast hits to 647 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 214; Fungi - 249; Plants - 154; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT2G45130.1p  transcript_id AT2G45130.1  protein_id AT2G45130.1p  transcript_id AT2G45130.1  
At2g45135	chr2:018609309	0.0	W/18609309-18609429,18609605-18609700,18609860-18610038,18610183-18610204,18610295-18610392	AT2G45135.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G45135.1p  transcript_id AT2G45135.1  protein_id AT2G45135.1p  transcript_id AT2G45135.1  
At2g45135	chr2:018609309	0.0	W/18609309-18609429,18609605-18609700,18609860-18610038,18610183-18610204,18610295-18610392	AT2G45135.2  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841).  protein_id AT2G45135.2p  transcript_id AT2G45135.2  protein_id AT2G45135.2p  transcript_id AT2G45135.2  
At2g45140	chr2:018611029	0.0	W/18611029-18611077,18611186-18611256,18611336-18611417,18611523-18611638,18611720-18611878,18611959-18612009,18612542-18612619,18612858-18612971	AT2G45140.1  CDS  gene_syn PLANT VAP HOMOLOG 12, PVA12, T14P1.5  gene PVA12  function Encodes a Plant VAMP-Associated protein that localizes to the ER and binds to the sitosterol-binding protein ORP3a. The WFDE motif in ORP3a appears to be important for this direct interaction. Mutation of this motif causes ORP3a to relocalize to the Golgi and cytosol. The interaction between PVA12 and ORP3a does not appear to be sterol-dependent.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function structural molecule activity|GO:0005198||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_function structural molecule activity|GO:0005198||ISS  product PVA12 (PLANT VAP HOMOLOG 12); structural molecule  note PLANT VAP HOMOLOG 12 (PVA12); FUNCTIONS IN: structural molecule activity; LOCATED IN: cytosol, endoplasmic reticulum, nucleus, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Vesicle-associated membrane protein (InterPro:IPR016763); BEST Arabidopsis thaliana protein match is: VAP (VESICLE ASSOCIATED PROTEIN); protein binding (TAIR:AT3G60600.1); Has 765 Blast hits to 753 proteins in 154 species: Archae - 0; Bacteria - 0; Metazoa - 372; Fungi - 101; Plants - 227; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT2G45140.1p  transcript_id AT2G45140.1  protein_id AT2G45140.1p  transcript_id AT2G45140.1  
At2g45150	chr2:018613402	0.0	W/18613402-18613746,18613938-18614227,18614321-18614511,18614634-18614758,18614840-18614973,18615058-18615173,18615256-18615347	AT2G45150.1  CDS  gene_syn T14P1.4  go_component membrane|GO:0016020||IEA  go_function transferase activity, transferring phosphorus-containing groups|GO:0016772||IEA  go_component membrane|GO:0016020||ISS  go_process phospholipid biosynthetic process|GO:0008654||ISS  go_function phosphatidate cytidylyltransferase activity|GO:0004605||ISS  product phosphatidate cytidylyltransferase family protein  note phosphatidate cytidylyltransferase family protein; FUNCTIONS IN: phosphatidate cytidylyltransferase activity, transferase activity, transferring phosphorus-containing groups; INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidate cytidylyltransferase (InterPro:IPR000374); BEST Arabidopsis thaliana protein match is: phosphatidate cytidylyltransferase family protein (TAIR:AT3G60620.1); Has 4805 Blast hits to 4802 proteins in 1406 species: Archae - 0; Bacteria - 2678; Metazoa - 155; Fungi - 91; Plants - 82; Viruses - 0; Other Eukaryotes - 1799 (source: NCBI BLink).  protein_id AT2G45150.1p  transcript_id AT2G45150.1  protein_id AT2G45150.1p  transcript_id AT2G45150.1  
At2g45150	chr2:018613402	0.0	W/18613402-18613746,18613938-18614227,18614321-18614511,18614634-18614788	AT2G45150.2  CDS  gene_syn T14P1.4  go_component membrane|GO:0016020||IEA  go_function transferase activity, transferring phosphorus-containing groups|GO:0016772||IEA  go_component membrane|GO:0016020||ISS  go_process phospholipid biosynthetic process|GO:0008654||ISS  go_function phosphatidate cytidylyltransferase activity|GO:0004605||ISS  product phosphatidate cytidylyltransferase family protein  note phosphatidate cytidylyltransferase family protein; FUNCTIONS IN: phosphatidate cytidylyltransferase activity, transferase activity, transferring phosphorus-containing groups; INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidate cytidylyltransferase (InterPro:IPR000374); BEST Arabidopsis thaliana protein match is: phosphatidate cytidylyltransferase family protein (TAIR:AT3G60620.1); Has 256 Blast hits to 256 proteins in 64 species: Archae - 0; Bacteria - 101; Metazoa - 0; Fungi - 4; Plants - 29; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT2G45150.2p  transcript_id AT2G45150.2  protein_id AT2G45150.2p  transcript_id AT2G45150.2  
At2g45150	chr2:018613519	0.0	W/18613519-18613746,18613965-18614227,18614321-18614511,18614634-18614758,18614840-18614973,18615058-18615173,18615256-18615347	AT2G45150.3  CDS  gene_syn T14P1.4  go_component chloroplast|GO:0009507||IEA  go_component membrane|GO:0016020||IEA  go_function transferase activity, transferring phosphorus-containing groups|GO:0016772||IEA  go_component membrane|GO:0016020||ISS  go_process phospholipid biosynthetic process|GO:0008654||ISS  go_function phosphatidate cytidylyltransferase activity|GO:0004605||ISS  product phosphatidate cytidylyltransferase family protein  note phosphatidate cytidylyltransferase family protein; FUNCTIONS IN: phosphatidate cytidylyltransferase activity, transferase activity, transferring phosphorus-containing groups; INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidate cytidylyltransferase (InterPro:IPR000374); BEST Arabidopsis thaliana protein match is: phosphatidate cytidylyltransferase family protein (TAIR:AT3G60620.1); Has 4805 Blast hits to 4802 proteins in 1406 species: Archae - 0; Bacteria - 2678; Metazoa - 155; Fungi - 91; Plants - 82; Viruses - 0; Other Eukaryotes - 1799 (source: NCBI BLink).  protein_id AT2G45150.3p  transcript_id AT2G45150.3  protein_id AT2G45150.3p  transcript_id AT2G45150.3  
At2g45160	chr2:018618110	0.0	C/18618110-18620032	AT2G45160.1  CDS  gene_syn T14P1.3  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product scarecrow transcription factor family protein  note scarecrow transcription factor family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: scarecrow transcription factor family protein (TAIR:AT3G60630.1); Has 1300 Blast hits to 1290 proteins in 186 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 0; Plants - 1292; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G45160.1p  transcript_id AT2G45160.1  protein_id AT2G45160.1p  transcript_id AT2G45160.1  
At2g45161	chr2:018620465	0.0	W/18620465-18620590	AT2G45161.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G45161.1p  transcript_id AT2G45161.1  protein_id AT2G45161.1p  transcript_id AT2G45161.1  
At2g45170	chr2:018624545	0.0	W/18624545-18624584,18624707-18624762,18625155-18625207,18625307-18625526	AT2G45170.1  CDS  gene_syn ATG8E, AtATG8e, T14P1.2, autophagy 8e  gene AtATG8e  function Involved in autophagy. Under nutrient starvation the protein localizes to autophagosomes.  go_component cytoplasm|GO:0005737|15860017|IDA  go_component autophagic vacuole|GO:0005776|15860017|IDA  go_component membrane|GO:0016020|15860017|IDA  go_process autophagy|GO:0006914||ISS  go_process cellular response to starvation|GO:0009267|15860017|IEP  go_function microtubule binding|GO:0008017||ISS  product AtATG8e; microtubule binding  note AtATG8e; FUNCTIONS IN: microtubule binding; INVOLVED IN: autophagy, cellular response to starvation; LOCATED IN: membrane, cytoplasm, autophagic vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: ATG8F (autophagy 8f); microtubule binding (TAIR:AT4G16520.2); Has 1163 Blast hits to 1161 proteins in 200 species: Archae - 0; Bacteria - 0; Metazoa - 579; Fungi - 124; Plants - 171; Viruses - 3; Other Eukaryotes - 286 (source: NCBI BLink).  protein_id AT2G45170.1p  transcript_id AT2G45170.1  protein_id AT2G45170.1p  transcript_id AT2G45170.1  
At2g45170	chr2:018624545	0.0	W/18624545-18624584,18624707-18624762,18625155-18625207,18625307-18625526	AT2G45170.2  CDS  gene_syn ATG8E, AtATG8e, T14P1.2, autophagy 8e  gene AtATG8e  function Involved in autophagy. Under nutrient starvation the protein localizes to autophagosomes.  go_component cytoplasm|GO:0005737|15860017|IDA  go_component autophagic vacuole|GO:0005776|15860017|IDA  go_component membrane|GO:0016020|15860017|IDA  go_process autophagy|GO:0006914||ISS  go_process cellular response to starvation|GO:0009267|15860017|IEP  go_function microtubule binding|GO:0008017||ISS  product AtATG8e; microtubule binding  note AtATG8e; FUNCTIONS IN: microtubule binding; INVOLVED IN: autophagy, cellular response to starvation; LOCATED IN: membrane, cytoplasm, autophagic vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: ATG8F (autophagy 8f); microtubule binding (TAIR:AT4G16520.2); Has 1163 Blast hits to 1161 proteins in 200 species: Archae - 0; Bacteria - 0; Metazoa - 579; Fungi - 124; Plants - 171; Viruses - 3; Other Eukaryotes - 286 (source: NCBI BLink).  protein_id AT2G45170.2p  transcript_id AT2G45170.2  protein_id AT2G45170.2p  transcript_id AT2G45170.2  
At2g45180	chr2:018626377	0.0	W/18626377-18626781	AT2G45180.1  CDS  gene_syn F4L23.31  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process lipid transport|GO:0006869||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT1G62510.1); Has 538 Blast hits to 534 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 538; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G45180.1p  transcript_id AT2G45180.1  protein_id AT2G45180.1p  transcript_id AT2G45180.1  
At2g45190	chr2:018630439	0.0	C/18630439-18630552,18630156-18630317,18629929-18630061,18629305-18629353,18629139-18629214,18628643-18628720,18628450-18628527	AT2G45190.1  CDS  gene_syn ABNORMAL FLORAL ORGANS, ABNORMAL FLORAL ORGANS PROTEIN, AFO, F4L23.30, FIL, FILAMENTOUS FLOWER, YAB1, YABBY1  gene AFO  function Encodes a member of the YABBY family of transcriptional regulators that is involved in abaxial cell type specification in leaves and fruits. YAB1 acts in a non-cell autonomous fashion within the meristem to affect phyllotactic patterning. The non-autonomous effect on the central region of the meristem is mediated through the activity if Lateral Suppressor (LAS).  go_component nucleus|GO:0005634|10323860|TAS  go_process regulation of flower development|GO:0009909|10331982|IMP  go_process meristem structural organization|GO:0009933|9878633|IMP  go_process polarity specification of adaxial/abaxial axis|GO:0009944||ISS  go_process fruit development|GO:0010154|16192305|IMP  go_process abaxial cell fate specification|GO:0010158|16192305|IGI  go_process specification of organ position|GO:0010159|18469164|IMP  go_process cell fate commitment|GO:0045165|9878633|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function protein binding|GO:0005515|15299139|IPI  go_function transcription regulator activity|GO:0030528|10323860|ISS  product AFO (ABNORMAL FLORAL ORGANS); protein binding / transcription factor/ transcription regulator  note ABNORMAL FLORAL ORGANS (AFO); FUNCTIONS IN: protein binding, transcription factor activity, transcription regulator activity; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: YAB3 (YABBY3); protein binding / transcription factor (TAIR:AT4G00180.1); Has 334 Blast hits to 332 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 320; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT2G45190.1p  transcript_id AT2G45190.1  protein_id AT2G45190.1p  transcript_id AT2G45190.1  
At2g45200	chr2:018639508	0.0	C/18639508-18639640,18638867-18639063,18638309-18638398,18638123-18638194,18637878-18638007,18637689-18637786	AT2G45200.1  CDS  gene_syn ATGOS12, F4L23.29, GOLGI SNARE 12, GOS12  gene GOS12  function Encodes a member of the GOS1 (Golgi SNARE) gene family.  go_component vacuole|GO:0005773|15539469|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component integral to membrane|GO:0016021|10831610|TAS  go_process intra-Golgi vesicle-mediated transport|GO:0006891|11115874|TAS  go_process membrane fusion|GO:0006944|10831610|IPI  go_function SNARE binding|GO:0000149|11115874|TAS  product GOS12 (GOLGI SNARE 12); SNARE binding  note GOLGI SNARE 12 (GOS12); FUNCTIONS IN: SNARE binding; INVOLVED IN: membrane fusion, intra-Golgi vesicle-mediated transport; LOCATED IN: cytosol, integral to membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vesicle transport v-SNARE (InterPro:IPR007705); BEST Arabidopsis thaliana protein match is: GOS11 (golgi snare 11); SNARE binding (TAIR:AT1G15880.1); Has 294 Blast hits to 294 proteins in 121 species: Archae - 0; Bacteria - 4; Metazoa - 124; Fungi - 87; Plants - 58; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT2G45200.1p  transcript_id AT2G45200.1  protein_id AT2G45200.1p  transcript_id AT2G45200.1  
At2g45210	chr2:018641884	0.0	W/18641884-18642372	AT2G45210.1  CDS  gene_syn F4L23.28  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive protein-related  note auxin-responsive protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT3G60690.1); Has 651 Blast hits to 648 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 650; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G45210.1p  transcript_id AT2G45210.1  protein_id AT2G45210.1p  transcript_id AT2G45210.1  
At2g45220	chr2:018645545	0.0	C/18645545-18646394,18644281-18644966	AT2G45220.1  CDS  gene_syn F4L23.27  go_component membrane|GO:0016020|17432890|IDA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: membrane, plant-type cell wall; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Carbohydrate-binding and sugar hydrolysis (InterPro:IPR006633), Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT5G51490.1); Has 1304 Blast hits to 1273 proteins in 193 species: Archae - 0; Bacteria - 259; Metazoa - 1; Fungi - 134; Plants - 899; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT2G45220.1p  transcript_id AT2G45220.1  protein_id AT2G45220.1p  transcript_id AT2G45220.1  
At2g45230	chr2:018651320	0.0	C/18651320-18655444	AT2G45230.1  mRNA_TE_gene  pseudo  gene_syn F4L23.26  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 3.9e-46 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At2g45240	chr2:018656059	0.0	W/18656059-18656132,18656348-18656398,18656482-18656652,18656759-18656834,18657095-18657142,18657256-18657300,18657397-18657496,18657622-18657673,18657760-18657801,18657901-18657962,18658047-18658145,18658249-18658322,18658407-18658476,18658567-18658632,18658740-18658906	AT2G45240.1  CDS  gene_syn F4L23.25, MAP1A, METHIONINE AMINOPEPTIDASE 1A  gene MAP1A  function Encodes a cytoplasmic MAP1 like methionine aminopeptidase which is involved in removing the N-terminal methionine from proteins. Induced mutants using RNAi technology which knocks out both MAP1 and MAP2 like genes show abnormal development.  go_function aminopeptidase activity|GO:0004177||IEA  go_function metalloexopeptidase activity|GO:0008235||IEA  go_component cytoplasm|GO:0005737|11060042|IDA  go_process protein processing|GO:0016485|11060042|NAS  go_process N-terminal protein amino acid modification|GO:0031365|15681659|TAS  product MAP1A (METHIONINE AMINOPEPTIDASE 1A); aminopeptidase/ metalloexopeptidase  note METHIONINE AMINOPEPTIDASE 1A (MAP1A); FUNCTIONS IN: metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: protein processing, N-terminal protein amino acid modification; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24, structural domain (InterPro:IPR000994), Peptidase M24A, methionine aminopeptidase, subfamily 1 (InterPro:IPR002467), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: MAP1C (METHIONINE AMINOPEPTIDASE 1B); aminopeptidase/ metalloexopeptidase (TAIR:AT1G13270.1); Has 11589 Blast hits to 11567 proteins in 1564 species: Archae - 236; Bacteria - 6090; Metazoa - 357; Fungi - 145; Plants - 146; Viruses - 0; Other Eukaryotes - 4615 (source: NCBI BLink).  protein_id AT2G45240.1p  transcript_id AT2G45240.1  protein_id AT2G45240.1p  transcript_id AT2G45240.1  
At2g45245	chr2:018659235	0.0	C/18659235-18660661	AT2G45245.3  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G45245.3  
At2g45245	chr2:018659254	0.0	C/18659254-18661294	AT2G45245.4  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G45245.4  
At2g45245	chr2:018659291	0.0	C/18659291-18660656	AT2G45245.2  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G45245.2  
At2g45245	chr2:018659422	0.0	C/18659422-18660655	AT2G45245.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G45245.1  
At2g45250	chr2:018661464	0.0	W/18661464-18661549,18661707-18662071,18662152-18662235,18662471-18662550	AT2G45250.1  CDS  gene_syn F4L23.24  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38280.1); Has 82 Blast hits to 80 proteins in 21 species: Archae - 0; Bacteria - 4; Metazoa - 5; Fungi - 6; Plants - 51; Viruses - 4; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT2G45250.1p  transcript_id AT2G45250.1  protein_id AT2G45250.1p  transcript_id AT2G45250.1  
At2g45250	chr2:018661464	0.0	W/18661464-18661549,18661707-18662071,18662152-18662235,18662669-18662781	AT2G45250.2  CDS  gene_syn F4L23.24  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Hly-III related (InterPro:IPR004254); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38280.1); Has 91 Blast hits to 89 proteins in 22 species: Archae - 0; Bacteria - 4; Metazoa - 6; Fungi - 6; Plants - 59; Viruses - 4; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT2G45250.2p  transcript_id AT2G45250.2  protein_id AT2G45250.2p  transcript_id AT2G45250.2  
At2g45260	chr2:018664661	0.0	C/18664661-18665938	AT2G45260.1  CDS  gene_syn F4L23.23  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF641, plant (InterPro:IPR006943); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34080.1); Has 294 Blast hits to 288 proteins in 32 species: Archae - 0; Bacteria - 10; Metazoa - 38; Fungi - 7; Plants - 179; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT2G45260.1p  transcript_id AT2G45260.1  protein_id AT2G45260.1p  transcript_id AT2G45260.1  
At2g45270	chr2:018666583	0.0	W/18666583-18666882,18666977-18667021,18667201-18667275,18667455-18667551,18667646-18667736,18667824-18667873,18668012-18668202,18668301-18668386,18668496-18668571,18668646-18668729,18668807-18668921,18669005-18669093,18669189-18669332	AT2G45270.1  CDS  gene_syn F4L23.22  go_process proteolysis|GO:0006508||IEA  go_function endopeptidase activity|GO:0004175||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process proteolysis|GO:0006508||ISS  product glycoprotease M22 family protein  note glycoprotease M22 family protein; FUNCTIONS IN: endopeptidase activity, metalloendopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M22, O-sialoglycoprotein endopeptidase (InterPro:IPR009180), Peptidase M22, glycoprotease, subgroup (InterPro:IPR017861), Peptidase M22, glycoprotease (InterPro:IPR000905); BEST Arabidopsis thaliana protein match is: glycoprotease M22 family protein (TAIR:AT4G22720.2); Has 7895 Blast hits to 7864 proteins in 1652 species: Archae - 179; Bacteria - 3268; Metazoa - 208; Fungi - 197; Plants - 129; Viruses - 0; Other Eukaryotes - 3914 (source: NCBI BLink).  protein_id AT2G45270.1p  transcript_id AT2G45270.1  protein_id AT2G45270.1p  transcript_id AT2G45270.1  
At2g45280	chr2:018670103	0.0	W/18670103-18670277,18670490-18670576,18670679-18670801,18670884-18670917,18671000-18671070,18671149-18671375,18671486-18671617,18671703-18671769,18671866-18672041	AT2G45280.1  CDS  gene_syn ATRAD51C, F4L23.21, RAD51C  gene ATRAD51C  function Encodes a protein similar to RAD51C involved in double stranded break repair via homologous recombination. Sensitive to DSB induced by Mitomycin C and gamma irradiation, interacts with Atxrcc3 in yeast two-hybrid assay. Required for female meiosis but not critical for mitosis under normal conditions.  go_component cellular_component|GO:0005575||ND  go_process double-strand break repair via homologous recombination|GO:0000724|15686518|IMP  go_process double-strand break repair via homologous recombination|GO:0000724|16169964|IMP  go_process DNA repair|GO:0006281||ISS  go_process meiosis|GO:0007126|15686518|IMP  go_process reciprocal meiotic recombination|GO:0007131|15686518|IMP  go_process male meiosis|GO:0007140|15923332|IMP  go_process female meiosis|GO:0007143|15923332|IMP  go_process somatic cell DNA recombination|GO:0016444|16169964|IMP  go_function recombinase activity|GO:0000150|15686518|ISS  go_function damaged DNA binding|GO:0003684||ISS  go_function single-stranded DNA binding|GO:0003697|12139010|ISS  go_function protein binding|GO:0005515|12139010|IPI  go_function ATP binding|GO:0005524|12139010|ISS  go_function ATP binding|GO:0005524||ISS  product ATRAD51C; ATP binding / damaged DNA binding / protein binding / recombinase/ single-stranded DNA binding  note ATRAD51C; FUNCTIONS IN: damaged DNA binding, protein binding, single-stranded DNA binding, recombinase activity, ATP binding; INVOLVED IN: in 7 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA repair and recombination, RecA-like (InterPro:IPR016467), Rad51, C-terminal (InterPro:IPR013632), RecA bacterial DNA recombination (InterPro:IPR001553); BEST Arabidopsis thaliana protein match is: DMC1 (DISRUPTION OF MEIOTIC CONTROL 1); ATP binding / DNA binding / DNA-dependent ATPase/ damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding / protein binding (TAIR:AT3G22880.1); Has 3734 Blast hits to 3724 proteins in 1231 species: Archae - 521; Bacteria - 1287; Metazoa - 656; Fungi - 340; Plants - 308; Viruses - 0; Other Eukaryotes - 622 (source: NCBI BLink).  protein_id AT2G45280.1p  transcript_id AT2G45280.1  protein_id AT2G45280.1p  transcript_id AT2G45280.1  
At2g45290	chr2:018672737	0.0	W/18672737-18673219,18673402-18673492,18673582-18673687,18673770-18674052,18674142-18674290,18674385-18674538,18674630-18675589	AT2G45290.1  CDS  gene_syn F4L23.20  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function catalytic activity|GO:0003824||IEA  go_function transketolase activity|GO:0004802||IEA  go_function transketolase activity|GO:0004802||ISS  product transketolase, putative  note transketolase, putative; FUNCTIONS IN: catalytic activity, transketolase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial transketolase (InterPro:IPR005478), Transketolase, N-terminal (InterPro:IPR005474), Transketolase, C-terminal (InterPro:IPR005476), Transketolase C-terminal-like (InterPro:IPR015941), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase, central region (InterPro:IPR005475); BEST Arabidopsis thaliana protein match is: transketolase, putative (TAIR:AT3G60750.1); Has 13908 Blast hits to 13873 proteins in 1542 species: Archae - 131; Bacteria - 6308; Metazoa - 273; Fungi - 204; Plants - 119; Viruses - 0; Other Eukaryotes - 6873 (source: NCBI BLink).  protein_id AT2G45290.1p  transcript_id AT2G45290.1  protein_id AT2G45290.1p  transcript_id AT2G45290.1  
At2g45300	chr2:018677518	0.0	W/18677518-18677856,18677944-18678188,18678274-18678427,18678662-18678876,18678958-18679075,18679215-18679425,18679501-18679562,18679650-18679868	AT2G45300.1  CDS  gene_syn F4L23.19  function encodes 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase involved in chorismate biosynthesis  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|3481024|TAS  go_process aromatic amino acid family biosynthetic process|GO:0009073|3481024|TAS  go_process chorismate biosynthetic process|GO:0009423|3481024|IMP  go_process glyphosate metabolic process|GO:0018920|3481024|IMP  go_function 3-phosphoshikimate 1-carboxyvinyltransferase activity|GO:0003866|3481024|IMP  product 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase  note 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase; FUNCTIONS IN: 3-phosphoshikimate 1-carboxyvinyltransferase activity; INVOLVED IN: glyphosate metabolic process, chorismate biosynthetic process, aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: 3-phosphoshikimate 1-carboxyvinyltransferase, core (InterPro:IPR001986), 3-phosphoshikimate 1-carboxyvinyltransferase, subgroup (InterPro:IPR006264), RNA 3&apos;-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (InterPro:IPR013792); BEST Arabidopsis thaliana protein match is: 3-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putative (TAIR:AT1G48860.1); Has 9250 Blast hits to 9240 proteins in 1562 species: Archae - 140; Bacteria - 5198; Metazoa - 4; Fungi - 108; Plants - 163; Viruses - 0; Other Eukaryotes - 3637 (source: NCBI BLink).  protein_id AT2G45300.1p  transcript_id AT2G45300.1  protein_id AT2G45300.1p  transcript_id AT2G45300.1  
At2g45315	chr2:018682108	0.0	C/18682108-18683810	AT2G45315.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G45310  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G45315.1  
At2g45315	chr2:018682125	0.0	C/18682125-18683827	AT2G45315.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G45310  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G45315.2  
At2g45310	chr2:018682652	0.0	W/18682652-18683965	AT2G45310.1  CDS  gene_syn F4L23.18, GAE4, UDP-D-GLUCURONATE 4-EPIMERASE 4  gene GAE4  function UDP-D-glucuronate 4-epimerase  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function racemase and epimerase activity, acting on carbohydrates and derivatives|GO:0016857||IEA  go_function coenzyme binding|GO:0050662||IEA  go_component cellular_component|GO:0005575||ND  go_process nucleotide-sugar metabolic process|GO:0009225||ISS  go_function catalytic activity|GO:0003824||ISS  product GAE4 (UDP-D-GLUCURONATE 4-EPIMERASE 4); binding / catalytic/ coenzyme binding / racemase and epimerase, acting on carbohydrates and derivatives  note UDP-D-GLUCURONATE 4-EPIMERASE 4 (GAE4); FUNCTIONS IN: coenzyme binding, racemase and epimerase activity, acting on carbohydrates and derivatives, binding, catalytic activity; INVOLVED IN: cellular metabolic process, carbohydrate metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: GAE2 (UDP-D-GLUCURONATE 4-EPIMERASE 2); UDP-glucuronate 4-epimerase/ catalytic (TAIR:AT1G02000.1); Has 31854 Blast hits to 31850 proteins in 1705 species: Archae - 481; Bacteria - 14742; Metazoa - 705; Fungi - 295; Plants - 709; Viruses - 33; Other Eukaryotes - 14889 (source: NCBI BLink).  protein_id AT2G45310.1p  transcript_id AT2G45310.1  protein_id AT2G45310.1p  transcript_id AT2G45310.1  
At2g45320	chr2:018685879	0.0	C/18685879-18686107,18685399-18685607,18685153-18685296,18684743-18684951,18684380-18684638,18684182-18684310	AT2G45320.1  CDS  gene_syn F4L23.17  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; Has 15 Blast hits to 15 proteins in 6 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G45320.1p  transcript_id AT2G45320.1  protein_id AT2G45320.1p  transcript_id AT2G45320.1  
At2g45330	chr2:018686340	0.0	W/18686340-18686503,18686604-18686711,18686793-18686940,18687037-18687126,18687258-18687312,18687392-18687514,18687605-18687661,18687750-18687874	AT2G45330.1  CDS  gene_syn F4L23.16, emb1067, embryo defective 1067  gene emb1067  go_function transferase activity, transferring phosphorus-containing groups|GO:0016772||IEA  go_process tRNA splicing, via endonucleolytic cleavage and ligation|GO:0006388||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function tRNA 2 -phosphotransferase activity|GO:0000215||ISS  product emb1067 (embryo defective 1067); tRNA 2 -phosphotransferase/ transferase, transferring phosphorus-containing groups  note embryo defective 1067 (emb1067); FUNCTIONS IN: tRNA 2 -phosphotransferase activity, transferase activity, transferring phosphorus-containing groups; INVOLVED IN: embryonic development ending in seed dormancy, tRNA splicing, via endonucleolytic cleavage and ligation; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Phosphotransferase KptA/Tpt1 (InterPro:IPR002745); BEST Arabidopsis thaliana protein match is: tRNA 2 phosphotransferase, putative (TAIR:AT5G23600.1); Has 556 Blast hits to 553 proteins in 258 species: Archae - 61; Bacteria - 249; Metazoa - 64; Fungi - 88; Plants - 16; Viruses - 6; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT2G45330.1p  transcript_id AT2G45330.1  protein_id AT2G45330.1p  transcript_id AT2G45330.1  
At2g45330	chr2:018686340	0.0	W/18686340-18686503,18686613-18686711,18686793-18686940,18687037-18687126,18687258-18687312,18687392-18687514,18687605-18687661,18687750-18687874	AT2G45330.2  CDS  gene_syn F4L23.16, emb1067, embryo defective 1067  gene emb1067  go_function transferase activity, transferring phosphorus-containing groups|GO:0016772||IEA  go_process tRNA splicing, via endonucleolytic cleavage and ligation|GO:0006388||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function tRNA 2 -phosphotransferase activity|GO:0000215||ISS  product emb1067 (embryo defective 1067); tRNA 2 -phosphotransferase/ transferase, transferring phosphorus-containing groups  note embryo defective 1067 (emb1067); FUNCTIONS IN: tRNA 2 -phosphotransferase activity, transferase activity, transferring phosphorus-containing groups; INVOLVED IN: embryonic development ending in seed dormancy, tRNA splicing, via endonucleolytic cleavage and ligation; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Phosphotransferase KptA/Tpt1 (InterPro:IPR002745); BEST Arabidopsis thaliana protein match is: tRNA 2 phosphotransferase, putative (TAIR:AT5G23600.1); Has 554 Blast hits to 551 proteins in 258 species: Archae - 61; Bacteria - 249; Metazoa - 64; Fungi - 86; Plants - 16; Viruses - 6; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT2G45330.2p  transcript_id AT2G45330.2  protein_id AT2G45330.2p  transcript_id AT2G45330.2  
At2g45340	chr2:018691739	0.0	W/18691739-18692168,18692530-18692790,18692998-18693894,18693979-18694466	AT2G45340.1  CDS  gene_syn F4L23.15  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT5G51560.1); Has 85809 Blast hits to 55492 proteins in 1478 species: Archae - 43; Bacteria - 3732; Metazoa - 27737; Fungi - 2611; Plants - 42228; Viruses - 161; Other Eukaryotes - 9297 (source: NCBI BLink).  protein_id AT2G45340.1p  transcript_id AT2G45340.1  protein_id AT2G45340.1p  transcript_id AT2G45340.1  
At2g45350	chr2:018694816	0.0	C/18694816-18696636	AT2G45350.1  CDS  gene_syn CHLORORESPIRATORY REDUCTION 4, CRR4, F4L23.14  gene CRR4  function Encodes a member of a PCMP (plant combinatorial and modular protein) family (PCMP-E subfamily) with 11 pentatricopeptide (PPR) repeats. The protein is involved in RNA editing of the initiation codon of ndhD in the chloroplast.  go_component vacuole|GO:0005773|14760709|IDA  go_component chloroplast|GO:0009507|15662426|ISS  go_process mRNA modification|GO:0016556|15662426|IMP  product CRR4 (CHLORORESPIRATORY REDUCTION 4)  note CHLORORESPIRATORY REDUCTION 4 (CRR4); INVOLVED IN: mRNA modification; LOCATED IN: chloroplast, vacuole; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G29760.1); Has 12486 Blast hits to 4771 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 67; Fungi - 13; Plants - 12225; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink).  protein_id AT2G45350.1p  transcript_id AT2G45350.1  protein_id AT2G45350.1p  transcript_id AT2G45350.1  
At2g45360	chr2:018698619	0.0	W/18698619-18698678,18698773-18699360	AT2G45360.1  CDS  gene_syn F4L23.13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1442 (InterPro:IPR009902); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60780.1); Has 55 Blast hits to 55 proteins in 8 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G45360.1p  transcript_id AT2G45360.1  protein_id AT2G45360.1p  transcript_id AT2G45360.1  
At2g45380	chr2:018700321	0.0	C/18700321-18700524,18700166-18700246,18699978-18700053,18699814-18699879,18699588-18699721	AT2G45380.2  CDS  gene_syn AT2G45370, F4L23.10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G22740.2); Has 48 Blast hits to 48 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT2G45380.2p  transcript_id AT2G45380.2  protein_id AT2G45380.2p  transcript_id AT2G45380.2  
At2g45380	chr2:018702958	0.0	C/18702958-18703093,18702798-18702864,18701966-18702103,18701775-18701877,18701537-18701671,18701098-18701145,18700564-18700897,18700321-18700487,18700166-18700246,18699978-18700053,18699814-18699879,18699588-18699721	AT2G45380.1  CDS  gene_syn AT2G45370, F4L23.10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: calcium ion binding (TAIR:AT4G34070.1); Has 72 Blast hits to 71 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT2G45380.1p  transcript_id AT2G45380.1  protein_id AT2G45380.1p  transcript_id AT2G45380.1  
At2g45390	chr2:018703678	0.0	W/18703678-18703750	AT2G45390.1  tRNA  gene_syn 8264.TRNA-LYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Lys (anticodon: CTT)  transcript_id AT2G45390.1  
At2g45400	chr2:018706019	0.0	C/18706019-18706235,18705036-18705578,18704201-18704396,18703960-18704098	AT2G45400.1  CDS  gene_syn BEN1, F4L23.9  gene BEN1  function involved in the regulation of brassinosteroid metabolic pathway  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  go_component cytoplasm|GO:0005737|17521414|IDA  go_process response to light intensity|GO:0009642|17521414|IEP  go_process flavonoid biosynthetic process|GO:0009813|1354004|IMP  go_process regulation of brassinosteroid biosynthetic process|GO:0010422|17521414|IMP  go_process brassinosteroid metabolic process|GO:0016131|17521414|IMP  go_function oxidoreductase activity, acting on CH-OH group of donors|GO:0016614||ISS  product BEN1; binding / catalytic/ coenzyme binding / oxidoreductase, acting on CH-OH group of donors  note BEN1; FUNCTIONS IN: coenzyme binding, oxidoreductase activity, acting on CH-OH group of donors, binding, catalytic activity; INVOLVED IN: regulation of brassinosteroid biosynthetic process, response to light intensity, brassinosteroid metabolic process, flavonoid biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: DFR (DIHYDROFLAVONOL 4-REDUCTASE); dihydrokaempferol 4-reductase (TAIR:AT5G42800.1); Has 5917 Blast hits to 5906 proteins in 959 species: Archae - 90; Bacteria - 1976; Metazoa - 308; Fungi - 524; Plants - 1476; Viruses - 7; Other Eukaryotes - 1536 (source: NCBI BLink).  protein_id AT2G45400.1p  transcript_id AT2G45400.1  protein_id AT2G45400.1p  transcript_id AT2G45400.1  
At2g45403	chr2:018709537	0.0	W/18709537-18709671,18709752-18709874,18709947-18710153	AT2G45403.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34095.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G45403.1p  transcript_id AT2G45403.1  protein_id AT2G45403.1p  transcript_id AT2G45403.1  
At2g45406	chr2:018710961	0.0	C/18710961-18711338	AT2G45406.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Kelch repeat type 1 (InterPro:IPR006652), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT2G44030.1).  protein_id AT2G45406.1p  transcript_id AT2G45406.1  protein_id AT2G45406.1p  transcript_id AT2G45406.1  
At2g45410	chr2:018712803	0.0	C/18712803-18713108,18712449-18712718	AT2G45410.1  CDS  gene_syn F4L23.8, LBD19, LOB DOMAIN-CONTAINING PROTEIN 19  gene LBD19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product LBD19 (LOB DOMAIN-CONTAINING PROTEIN 19)  note LOB DOMAIN-CONTAINING PROTEIN 19 (LBD19); INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD31 (LOB DOMAIN-CONTAINING PROTEIN 31) (TAIR:AT4G00210.1); Has 569 Blast hits to 566 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 569; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G45410.1p  transcript_id AT2G45410.1  protein_id AT2G45410.1p  transcript_id AT2G45410.1  
At2g45412	chr2:018714574	0.0	C/18714574-18714729	AT2G45412.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G45412.1p  transcript_id AT2G45412.1  protein_id AT2G45412.1p  transcript_id AT2G45412.1  
At2g45420	chr2:018718601	0.0	W/18718601-18718969,18720026-18720445	AT2G45420.1  CDS  gene_syn F4L23.7, LBD18, LOB DOMAIN-CONTAINING PROTEIN 18  gene LBD18  go_component nucleus|GO:0005634|19088331|IDA  go_process xylem histogenesis|GO:0010089|19088331|IMP  product LBD18 (LOB DOMAIN-CONTAINING PROTEIN 18)  note LOB DOMAIN-CONTAINING PROTEIN 18 (LBD18); INVOLVED IN: xylem histogenesis; LOCATED IN: nucleus; EXPRESSED IN: tracheary element, sperm cell; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883), Uncharacterised conserved protein UCP038127, LOB (InterPro:IPR017394); BEST Arabidopsis thaliana protein match is: JLO (JAGGED LATERAL ORGANS) (TAIR:AT4G00220.1); Has 11512 Blast hits to 4742 proteins in 447 species: Archae - 12; Bacteria - 2005; Metazoa - 4652; Fungi - 465; Plants - 3012; Viruses - 142; Other Eukaryotes - 1224 (source: NCBI BLink).  protein_id AT2G45420.1p  transcript_id AT2G45420.1  protein_id AT2G45420.1p  transcript_id AT2G45420.1  
At2g45430	chr2:018727848	0.0	W/18727848-18728801	AT2G45430.1  CDS  gene_syn F4L23.6  go_process biological_process|GO:0008150||ND  product DNA-binding protein-related  note DNA-binding protein-related; INVOLVED IN: biological_process unknown; EXPRESSED IN: hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: DNA-binding protein-related (TAIR:AT3G60870.1); Has 474 Blast hits to 471 proteins in 35 species: Archae - 0; Bacteria - 4; Metazoa - 34; Fungi - 10; Plants - 424; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G45430.1p  transcript_id AT2G45430.1  protein_id AT2G45430.1p  transcript_id AT2G45430.1  
At2g45434	chr2:018729733	0.0	W/18729733-18729843	AT2G45434.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G45434.1p  transcript_id AT2G45434.1  protein_id AT2G45434.1p  transcript_id AT2G45434.1  
At2g45440	chr2:018731294	0.0	W/18731294-18731379,18731736-18731819,18731940-18732867	AT2G45440.1  CDS  gene_syn DHDPS2, DIHYDRODIPICOLINATE SYNTHASE, F4L23.5  gene DHDPS2  function mutant has Increased levels of threonine; Dihydrodipicolinate Synthase 2  go_component chloroplast|GO:0009507|18431481|IDA  go_process metabolic process|GO:0008152||IEA  go_process diaminopimelate biosynthetic process|GO:0019877||IEA  go_function catalytic activity|GO:0003824||IEA  go_function dihydrodipicolinate synthase activity|GO:0008840||IEA  go_function lyase activity|GO:0016829||IEA  go_process lysine biosynthetic process via diaminopimelate|GO:0009089||ISS  go_function dihydrodipicolinate synthase activity|GO:0008840||ISS  product DHDPS2 (DIHYDRODIPICOLINATE SYNTHASE); catalytic/ dihydrodipicolinate synthase/ lyase  note DIHYDRODIPICOLINATE SYNTHASE (DHDPS2); FUNCTIONS IN: lyase activity, catalytic activity, dihydrodipicolinate synthase activity; INVOLVED IN: lysine biosynthetic process via diaminopimelate, metabolic process, diaminopimelate biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Dihydrodipicolinate synthase subfamily (InterPro:IPR005263), Dihydrodipicolinate synthetase (InterPro:IPR002220); BEST Arabidopsis thaliana protein match is: dihydrodipicolinate synthase 1 (DHDPS1) (DHDPS) (DHPS1) (TAIR:AT3G60880.2); Has 8569 Blast hits to 8569 proteins in 1461 species: Archae - 208; Bacteria - 5013; Metazoa - 87; Fungi - 193; Plants - 65; Viruses - 0; Other Eukaryotes - 3003 (source: NCBI BLink).  protein_id AT2G45440.1p  transcript_id AT2G45440.1  protein_id AT2G45440.1p  transcript_id AT2G45440.1  
At2g45450	chr2:018733832	0.0	C/18733832-18734058,18733548-18733731	AT2G45450.1  CDS  gene_syn F4L23.4, LITTLE ZIPPER 1, ZPR1  gene ZPR1  function ZPR1, a small leucine zipper-containing protein that interacts with REV HD-ZIPIII and is involved in the establishment of leaf polarity.  go_component cellular_component|GO:0005575||ND  go_process adaxial/abaxial axis specification|GO:0009943|18055602|IMP  go_process leaf shaping|GO:0010358|18055602|IMP  go_function protein binding|GO:0005515|18055602|IPI  product ZPR1 (LITTLE ZIPPER 1); protein binding  note LITTLE ZIPPER 1 (ZPR1); FUNCTIONS IN: protein binding; INVOLVED IN: leaf shaping, adaxial/abaxial axis specification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: ZPR2 (LITTLE ZIPPER 2); protein binding (TAIR:AT3G60890.1); Has 38 Blast hits to 38 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G45450.1p  transcript_id AT2G45450.1  protein_id AT2G45450.1p  transcript_id AT2G45450.1  
At2g45460	chr2:018741433	0.0	C/18741433-18741690,18741129-18741298,18740943-18741046,18740694-18740774,18740432-18740535,18740241-18740327,18739908-18740152,18739225-18739426,18739087-18739137,18738885-18738983,18738732-18738791,18738405-18738526,18737054-18738218	AT2G45460.1  CDS  gene_syn F4L23.3  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700||IEA  product forkhead-associated domain-containing protein / FHA domain-containing protein  note forkhead-associated domain-containing protein / FHA domain-containing protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (InterPro:IPR000253), TSC-22 / Dip / Bun (InterPro:IPR000580); BEST Arabidopsis thaliana protein match is: CIP1 (COP1-INTERACTIVE PROTEIN 1); protein binding (TAIR:AT5G41790.1); Has 72255 Blast hits to 40875 proteins in 1850 species: Archae - 633; Bacteria - 10532; Metazoa - 36222; Fungi - 5255; Plants - 2524; Viruses - 286; Other Eukaryotes - 16803 (source: NCBI BLink).  protein_id AT2G45460.1p  transcript_id AT2G45460.1  protein_id AT2G45460.1p  transcript_id AT2G45460.1  
At2g45470	chr2:018742797	0.0	C/18742797-18744059	AT2G45470.1  CDS  gene_syn AGP8, ARABINOGALACTAN PROTEIN 8, F4L23.2, FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 8, FLA8  gene FLA8  go_component plasma membrane|GO:0005886|17644812|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component anchored to plasma membrane|GO:0046658|12805588|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  product FLA8 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 8)  note FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 8 (FLA8); LOCATED IN: anchored to plasma membrane, apoplast, plasma membrane, anchored to membrane, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FLA10 (TAIR:AT3G60900.1); Has 13304 Blast hits to 6149 proteins in 712 species: Archae - 78; Bacteria - 4055; Metazoa - 1332; Fungi - 777; Plants - 1681; Viruses - 864; Other Eukaryotes - 4517 (source: NCBI BLink).  protein_id AT2G45470.1p  transcript_id AT2G45470.1  protein_id AT2G45470.1p  transcript_id AT2G45470.1  
At2g45480	chr2:018745583	0.0	W/18745583-18745802,18746144-18746614,18746713-18746898,18746991-18747403	AT2G45480.1  CDS  gene_syn AtGRF9, F4L23.1, F4L23_1, GROWTH-REGULATING FACTOR 9  gene AtGRF9  function Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development.  go_component nucleus|GO:0005634|12974814|ISS  go_process leaf development|GO:0048366|12974814|TAS  go_function transcription activator activity|GO:0016563|12974814|ISS  product AtGRF9 (GROWTH-REGULATING FACTOR 9); transcription activator  note GROWTH-REGULATING FACTOR 9 (AtGRF9); FUNCTIONS IN: transcription activator activity; INVOLVED IN: leaf development; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Glutamine-Leucine-Glutamine, QLQ (InterPro:IPR014978), WRC (InterPro:IPR014977); BEST Arabidopsis thaliana protein match is: AtGRF3 (GROWTH-REGULATING FACTOR 3); transcription activator (TAIR:AT2G36400.1); Has 636 Blast hits to 324 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 636; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G45480.1p  transcript_id AT2G45480.1  protein_id AT2G45480.1p  transcript_id AT2G45480.1  
At2g45490	chr2:018748916	0.0	C/18748916-18749044,18748542-18748784,18748311-18748406,18748022-18748236,18747864-18747936,18747658-18747768	AT2G45490.1  CDS  gene_syn ATAURORA3, AtAUR3, F17K2.2  gene AtAUR3  function Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. The protein is concentrated in nuclear dots arranged around the nucleolus and the nuclear periphery in early prophase cells.  go_component chromosome, centromeric region|GO:0000775|15469496|IDA  go_component nucleus|GO:0005634|15469496|IDA  go_component nucleus|GO:0005634|15722465|IDA  go_component spindle|GO:0005819|15469496|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process histone phosphorylation|GO:0016572|16028112|IDA  go_function protein kinase activity|GO:0004672||ISS  go_function ATP binding|GO:0005524||ISS  go_function histone kinase activity (H3-S10 specific)|GO:0035175|16028112|IDA  product AtAUR3 (ATAURORA3); ATP binding / histone kinase(H3-S10 specific) / protein kinase  note ATAURORA3 (AtAUR3); FUNCTIONS IN: histone kinase activity (H3-S10 specific), protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, histone phosphorylation; LOCATED IN: chromosome, centromeric region, nucleus, spindle; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: AtAUR1 (ATAURORA1); histone kinase(H3-S10 specific) / kinase/ protein serine/threonine kinase (TAIR:AT4G32830.1); Has 96757 Blast hits to 95119 proteins in 3211 species: Archae - 68; Bacteria - 8670; Metazoa - 42057; Fungi - 8664; Plants - 18568; Viruses - 506; Other Eukaryotes - 18224 (source: NCBI BLink).  protein_id AT2G45490.1p  transcript_id AT2G45490.1  protein_id AT2G45490.1p  transcript_id AT2G45490.1  
At2g45500	chr2:018752326	0.0	C/18752326-18752636,18752150-18752241,18752008-18752030,18751604-18751844,18751425-18751520,18751238-18751353,18751050-18751130,18750748-18750871,18750572-18750621,18750355-18750481,18750175-18750272,18749973-18750089	AT2G45500.1  CDS  gene_syn F17K2.3  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATP binding|GO:0005524||ISS  product ATP binding / nucleoside-triphosphatase/ nucleotide binding  note ATP binding / nucleoside-triphosphatase/ nucleotide binding; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), MIT (InterPro:IPR007330); BEST Arabidopsis thaliana protein match is: ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (TAIR:AT3G27120.1); Has 24223 Blast hits to 22559 proteins in 1837 species: Archae - 865; Bacteria - 8540; Metazoa - 4161; Fungi - 2341; Plants - 1523; Viruses - 17; Other Eukaryotes - 6776 (source: NCBI BLink).  protein_id AT2G45500.1p  transcript_id AT2G45500.1  protein_id AT2G45500.1p  transcript_id AT2G45500.1  
At2g45500	chr2:018752326	0.0	C/18752326-18752636,18752162-18752241,18752008-18752030,18751604-18751844,18751425-18751520,18751238-18751353,18751050-18751130,18750748-18750871,18750572-18750621,18750355-18750481,18750175-18750272,18749973-18750089	AT2G45500.2  CDS  gene_syn F17K2.3  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATP binding|GO:0005524||ISS  product ATP binding / nucleoside-triphosphatase/ nucleotide binding  note ATP binding / nucleoside-triphosphatase/ nucleotide binding; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), MIT (InterPro:IPR007330); BEST Arabidopsis thaliana protein match is: ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (TAIR:AT3G27120.1); Has 24219 Blast hits to 22555 proteins in 1838 species: Archae - 865; Bacteria - 8528; Metazoa - 4161; Fungi - 2345; Plants - 1526; Viruses - 17; Other Eukaryotes - 6777 (source: NCBI BLink).  protein_id AT2G45500.2p  transcript_id AT2G45500.2  protein_id AT2G45500.2p  transcript_id AT2G45500.2  
At2g45510	chr2:018753085	0.0	W/18753085-18753606,18753682-18753966,18754042-18754380,18754462-18754662,18754756-18754944	AT2G45510.1  CDS  gene_syn CYP704A2, F17K2.4  gene CYP704A2  function member of CYP704A  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_function oxygen binding|GO:0019825||ISS  product CYP704A2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP704A2; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP704A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT2G44890.1); Has 21202 Blast hits to 21135 proteins in 1094 species: Archae - 19; Bacteria - 1573; Metazoa - 9716; Fungi - 4023; Plants - 5017; Viruses - 3; Other Eukaryotes - 851 (source: NCBI BLink).  protein_id AT2G45510.1p  transcript_id AT2G45510.1  protein_id AT2G45510.1p  transcript_id AT2G45510.1  
At2g45520	chr2:018756115	0.0	C/18756115-18756268,18755945-18756012,18755643-18755776,18755424-18755559,18755209-18755334	AT2G45520.1  CDS  gene_syn F17K2.5  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 264 Blast hits to 236 proteins in 63 species: Archae - 0; Bacteria - 2; Metazoa - 119; Fungi - 42; Plants - 17; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT2G45520.1p  transcript_id AT2G45520.1  protein_id AT2G45520.1p  transcript_id AT2G45520.1  
At2g45530	chr2:018756604	0.0	W/18756604-18757326	AT2G45530.1  CDS  gene_syn F17K2.6  go_function zinc ion binding|GO:0008270||IEA  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G37950.1); Has 621 Blast hits to 621 proteins in 69 species: Archae - 0; Bacteria - 0; Metazoa - 262; Fungi - 5; Plants - 312; Viruses - 3; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT2G45530.1p  transcript_id AT2G45530.1  protein_id AT2G45530.1p  transcript_id AT2G45530.1  
At2g45540	chr2:018770276	0.0	C/18770276-18772229,18769223-18770007,18768009-18768764,18767452-18767586,18767085-18767189,18766807-18766920,18766628-18766704,18766289-18766370,18765600-18765905,18764671-18765269,18764268-18764352,18763893-18764087,18763201-18763749,18762978-18763121,18762424-18762900,18762052-18762194,18761582-18761651,18761386-18761469,18761176-18761232,18761006-18761074,18760834-18760920,18760613-18760729,18760301-18760450,18760120-18760204,18759910-18760030,18759679-18759775,18759110-18759593,18758292-18759034,18758094-18758216,18757881-18757928	AT2G45540.1  CDS  gene_syn F17K2.7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product WD-40 repeat family protein / beige-related  note WD-40 repeat family protein / beige-related; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Beige/BEACH (InterPro:IPR000409), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: beige/BEACH domain-containing protein (TAIR:AT3G60920.1); Has 11372 Blast hits to 6946 proteins in 396 species: Archae - 6; Bacteria - 2960; Metazoa - 4114; Fungi - 1905; Plants - 570; Viruses - 0; Other Eukaryotes - 1817 (source: NCBI BLink).  protein_id AT2G45540.1p  transcript_id AT2G45540.1  protein_id AT2G45540.1p  transcript_id AT2G45540.1  
At2g45550	chr2:018775260	0.0	C/18775260-18775654,18774423-18774945,18773541-18774158	AT2G45550.1  CDS  gene_syn CYP76C4, F17K2.8  gene CYP76C4  function member of CYP76C  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP76C4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP76C4; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; EXPRESSED IN: stem, root, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP76C2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT2G45570.1); Has 24640 Blast hits to 24475 proteins in 1314 species: Archae - 32; Bacteria - 2664; Metazoa - 10503; Fungi - 4690; Plants - 5698; Viruses - 6; Other Eukaryotes - 1047 (source: NCBI BLink).  protein_id AT2G45550.1p  transcript_id AT2G45550.1  protein_id AT2G45550.1p  transcript_id AT2G45550.1  
At2g45560	chr2:018777960	0.0	C/18777960-18778354,18777240-18777813	AT2G45560.2  CDS  gene_syn CYP76C1, F17K2.9  gene CYP76C1  function cytochrome P450 monooxygenase  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  product CYP76C1; electron carrier/ heme binding / iron ion binding / monooxygenase  note CYP76C1; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP76C2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT2G45570.1); Has 6242 Blast hits to 6221 proteins in 406 species: Archae - 4; Bacteria - 22; Metazoa - 2759; Fungi - 236; Plants - 3099; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT2G45560.2p  transcript_id AT2G45560.2  protein_id AT2G45560.2p  transcript_id AT2G45560.2  
At2g45560	chr2:018777960	0.0	C/18777960-18778354,18777291-18777813,18776391-18777011	AT2G45560.1  CDS  gene_syn CYP76C1, F17K2.9  gene CYP76C1  function cytochrome P450 monooxygenase  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  product CYP76C1; electron carrier/ heme binding / iron ion binding / monooxygenase  note CYP76C1; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973); BEST Arabidopsis thaliana protein match is: CYP76C2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT2G45570.1); Has 24728 Blast hits to 24520 proteins in 1305 species: Archae - 32; Bacteria - 2608; Metazoa - 10533; Fungi - 4630; Plants - 5769; Viruses - 6; Other Eukaryotes - 1150 (source: NCBI BLink).  protein_id AT2G45560.1p  transcript_id AT2G45560.1  protein_id AT2G45560.1p  transcript_id AT2G45560.1  
At2g45570	chr2:018781528	0.0	C/18781528-18781922,18780661-18781186,18779935-18780552	AT2G45570.1  CDS  gene_syn CYP76C2, F17K2.10  gene CYP76C2  function member of CYP76C  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP76C2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP76C2; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; EXPRESSED IN: stem, male gametophyte, sepal, carpel, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP76C4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT2G45550.1); Has 24064 Blast hits to 23898 proteins in 1271 species: Archae - 23; Bacteria - 2311; Metazoa - 10458; Fungi - 4568; Plants - 5759; Viruses - 3; Other Eukaryotes - 942 (source: NCBI BLink).  protein_id AT2G45570.1p  transcript_id AT2G45570.1  protein_id AT2G45570.1p  transcript_id AT2G45570.1  
At2g45580	chr2:018783895	0.0	C/18783895-18784286,18783202-18783733,18782842-18783120,18782388-18782732	AT2G45580.1  CDS  gene_syn CYP76C3, F17K2.11  gene CYP76C3  function member of CYP76C  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP76C3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP76C3; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP76C4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT2G45550.1); Has 24053 Blast hits to 23871 proteins in 1280 species: Archae - 23; Bacteria - 2248; Metazoa - 10506; Fungi - 4581; Plants - 5678; Viruses - 6; Other Eukaryotes - 1011 (source: NCBI BLink).  protein_id AT2G45580.1p  transcript_id AT2G45580.1  protein_id AT2G45580.1p  transcript_id AT2G45580.1  
At2g45590	chr2:018786725	0.0	W/18786725-18788776	AT2G45590.1  CDS  gene_syn F17K2.12  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function ATP binding|GO:0005524||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G25390.1); Has 61750 Blast hits to 51330 proteins in 2446 species: Archae - 26; Bacteria - 3483; Metazoa - 21877; Fungi - 3497; Plants - 25559; Viruses - 107; Other Eukaryotes - 7201 (source: NCBI BLink).  protein_id AT2G45590.1p  transcript_id AT2G45590.1  protein_id AT2G45590.1p  transcript_id AT2G45590.1  
At2g45600	chr2:018789799	0.0	W/18789799-18790788	AT2G45600.1  CDS  gene_syn F17K2.13  go_process metabolic process|GO:0008152||IEA  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  product hydrolase  note hydrolase; FUNCTIONS IN: hydrolase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDXG, active site (InterPro:IPR002168), Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: hydrolase (TAIR:AT2G45610.1); Has 5631 Blast hits to 5622 proteins in 864 species: Archae - 49; Bacteria - 2789; Metazoa - 624; Fungi - 566; Plants - 646; Viruses - 3; Other Eukaryotes - 954 (source: NCBI BLink).  protein_id AT2G45600.1p  transcript_id AT2G45600.1  protein_id AT2G45600.1p  transcript_id AT2G45600.1  
At2g45610	chr2:018791463	0.0	W/18791463-18792437	AT2G45610.1  CDS  gene_syn F17K2.14  go_process metabolic process|GO:0008152||IEA  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  product hydrolase  note hydrolase; FUNCTIONS IN: hydrolase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: hydrolase (TAIR:AT2G45600.1); Has 3982 Blast hits to 3974 proteins in 743 species: Archae - 45; Bacteria - 2112; Metazoa - 281; Fungi - 352; Plants - 641; Viruses - 3; Other Eukaryotes - 548 (source: NCBI BLink).  protein_id AT2G45610.1p  transcript_id AT2G45610.1  protein_id AT2G45610.1p  transcript_id AT2G45610.1  
At2g45620	chr2:018792943	0.0	W/18792943-18794148,18794308-18794676,18794785-18795008,18795090-18795153,18795234-18795430,18795516-18795750	AT2G45620.1  CDS  gene_syn F17K2.15  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleotidyltransferase activity|GO:0016779||ISS  product nucleotidyltransferase family protein  note nucleotidyltransferase family protein; FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotidyltransferase (InterPro:IPR002934), PAP/25A-associated (InterPro:IPR002058); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G45750.1); Has 1532 Blast hits to 1443 proteins in 168 species: Archae - 0; Bacteria - 5; Metazoa - 813; Fungi - 252; Plants - 82; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink).  protein_id AT2G45620.1p  transcript_id AT2G45620.1  protein_id AT2G45620.1p  transcript_id AT2G45620.1  
At2g45630	chr2:018796000	0.0	W/18796000-18796494,18796568-18797089	AT2G45630.2  CDS  gene_syn F17K2.16  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_function cofactor binding|GO:0048037||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||ISS  product oxidoreductase family protein  note oxidoreductase family protein; FUNCTIONS IN: NAD or NADH binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, binding, catalytic activity, cofactor binding; INVOLVED IN: metabolic process; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: oxidoreductase family protein (TAIR:AT1G12550.1); Has 19514 Blast hits to 19508 proteins in 1512 species: Archae - 283; Bacteria - 9436; Metazoa - 661; Fungi - 754; Plants - 319; Viruses - 5; Other Eukaryotes - 8056 (source: NCBI BLink).  protein_id AT2G45630.2p  transcript_id AT2G45630.2  protein_id AT2G45630.2p  transcript_id AT2G45630.2  
At2g45630	chr2:018796000	0.0	W/18796000-18796560	AT2G45630.1  CDS  gene_syn F17K2.16  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||ISS  product oxidoreductase family protein  note oxidoreductase family protein; FUNCTIONS IN: NAD or NADH binding, binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region (InterPro:IPR006139), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: oxidoreductase family protein (TAIR:AT1G12550.1); Has 4306 Blast hits to 4305 proteins in 842 species: Archae - 172; Bacteria - 2396; Metazoa - 334; Fungi - 109; Plants - 83; Viruses - 0; Other Eukaryotes - 1212 (source: NCBI BLink).  protein_id AT2G45630.1p  transcript_id AT2G45630.1  protein_id AT2G45630.1p  transcript_id AT2G45630.1  
At2g45640	chr2:018801213	0.0	C/18801213-18801323,18801066-18801098,18800843-18800953,18800505-18800600,18800033-18800107,18799881-18799913	AT2G45640.1  CDS  gene_syn ATSAP18, F17K2.17, SAP18, SIN3 ASSOCIATED POLYPEPTIDE 18, SIN3 ASSOCIATED POLYPEPTIDE P18  gene SAP18  function Involved in the regulation of salt stress. Expression of AtSAP18 is induced by NaCl, cold, drought, ABA, and ethylene treatment. AtSAP18 and HDA19 associate with ERF3 and ERF4 both in vitro and in vivo.  go_component nucleolus|GO:0005730|15496452|IDA  go_process response to salt stress|GO:0009651|16429262|IMP  go_process response to abscisic acid stimulus|GO:0009737|16429262|IEP  go_function protein binding|GO:0005515|16429262|IPI  go_function transcription regulator activity|GO:0030528||ISS  product SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18); protein binding / transcription regulator  note SIN3 ASSOCIATED POLYPEPTIDE P18 (SAP18); FUNCTIONS IN: protein binding, transcription regulator activity; INVOLVED IN: response to salt stress, response to abscisic acid stimulus; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sin3 associated polypeptide p18 (InterPro:IPR010516), Histone deacetylase complex, SAP18 subunit (InterPro:IPR017250); Has 206 Blast hits to 206 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 137; Fungi - 28; Plants - 21; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT2G45640.1p  transcript_id AT2G45640.1  protein_id AT2G45640.1p  transcript_id AT2G45640.1  
At2g45650	chr2:018804453	0.0	W/18804453-18804634,18805135-18805213,18805344-18805405,18805526-18805625,18805699-18805740,18805818-18805859,18805953-18806107,18806195-18806291	AT2G45650.1  CDS  gene_syn AGAMOUS-LIKE 6, AGL6, F17K2.18  gene AGL6  function sequence suggests this encodes a MADS-box transcription factor  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700|1672119|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL6 (AGAMOUS-LIKE 6); DNA binding / transcription factor  note AGAMOUS-LIKE 6 (AGL6); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGL13 (AGAMOUS-LIKE 13); DNA binding / transcription factor (TAIR:AT3G61120.1); Has 5309 Blast hits to 5305 proteins in 691 species: Archae - 0; Bacteria - 0; Metazoa - 554; Fungi - 208; Plants - 4492; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT2G45650.1p  transcript_id AT2G45650.1  protein_id AT2G45650.1p  transcript_id AT2G45650.1  
At2g45660	chr2:018810012	0.0	C/18810012-18810193,18808928-18809009,18808675-18808736,18808468-18808567,18808323-18808364,18808159-18808200,18807799-18807933	AT2G45660.1  CDS  gene_syn AGAMOUS-LIKE 20, AGL20, F17K2.19, MADS-BOX PROTEIN AGL20, SOC1, SUPPRESSOR OF OVEREXPRESSION OF CO 1  gene AGL20  function Controls flowering and is required for CO to promote flowering. It acts downstream of FT. Overexpression of (SOC1) AGL20 suppresses not only the late flowering of plants that have functional FRI and FLC alleles but also the delayed phase transitions during the vegetative stages of development. AGL20/SOC1 acts with AGL24 to promote flowering and inflorescence meristem identity.AGL20 upregulates expression of AGL24 in response to GA.  go_component nucleus|GO:0005634||IEA  go_process response to cold|GO:0009409|16507079|IEP  go_process flower development|GO:0009908|10995392|TAS  go_process positive regulation of flower development|GO:0009911|10834834|IMP  go_process positive regulation of flower development|GO:0009911|11123798|IMP  go_function transcription factor activity|GO:0003700|10995392|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11123798|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL20 (AGAMOUS-LIKE 20); transcription factor  note AGAMOUS-LIKE 20 (AGL20); FUNCTIONS IN: transcription factor activity; INVOLVED IN: flower development, positive regulation of flower development, response to cold; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGL42 (AGAMOUS LIKE 42); transcription factor (TAIR:AT5G62165.3); Has 5383 Blast hits to 5378 proteins in 697 species: Archae - 0; Bacteria - 10; Metazoa - 595; Fungi - 215; Plants - 4487; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT2G45660.1p  transcript_id AT2G45660.1  protein_id AT2G45660.1p  transcript_id AT2G45660.1  
At2g45670	chr2:018817919	0.0	C/18817919-18818382,18817532-18817712,18817387-18817446,18817043-18817206,18816890-18816953,18816727-18816795,18816530-18816625,18816287-18816331,18816003-18816073,18815820-18815886,18815653-18815703,18815422-18815532,18815285-18815332,18815070-18815198	AT2G45670.1  CDS  gene_syn F17K2.20  go_process metabolic process|GO:0008152||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function acyltransferase activity|GO:0008415||IEA  product calcineurin B subunit-related  note calcineurin B subunit-related; FUNCTIONS IN: calcium ion binding, acyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), Phospholipid/glycerol acyltransferase (InterPro:IPR002123), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: phospholipid/glycerol acyltransferase family protein (TAIR:AT1G80950.1); Has 2556 Blast hits to 2535 proteins in 492 species: Archae - 0; Bacteria - 478; Metazoa - 922; Fungi - 140; Plants - 587; Viruses - 0; Other Eukaryotes - 429 (source: NCBI BLink).  protein_id AT2G45670.1p  transcript_id AT2G45670.1  protein_id AT2G45670.1p  transcript_id AT2G45670.1  
At2g45670	chr2:018817919	0.0	C/18817919-18818382,18817532-18817712,18817387-18817446,18817080-18817220	AT2G45670.2  CDS  gene_syn F17K2.20  go_process metabolic process|GO:0008152||IEA  go_function acyltransferase activity|GO:0008415||IEA  product calcineurin B subunit-related  note calcineurin B subunit-related; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); Has 239 Blast hits to 239 proteins in 67 species: Archae - 0; Bacteria - 7; Metazoa - 156; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT2G45670.2p  transcript_id AT2G45670.2  protein_id AT2G45670.2p  transcript_id AT2G45670.2  
At2g45685	chr2:018820691	0.0	W/18820691-18822184	AT2G45685.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G45680  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G45685.1  
At2g45680	chr2:018820717	0.0	C/18820717-18821787	AT2G45680.1  CDS  gene_syn F17K2.21  go_component nucleus|GO:0005634|15610358|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product TCP family transcription factor, putative  note TCP family transcription factor, putative; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor, putative (TAIR:AT5G51910.2); Has 1037 Blast hits to 398 proteins in 90 species: Archae - 0; Bacteria - 18; Metazoa - 101; Fungi - 57; Plants - 215; Viruses - 0; Other Eukaryotes - 646 (source: NCBI BLink).  protein_id AT2G45680.1p  transcript_id AT2G45680.1  protein_id AT2G45680.1p  transcript_id AT2G45680.1  
At2g45690	chr2:018825533	0.0	C/18825533-18825601,18825171-18825228,18824661-18824880,18824012-18824576,18823870-18823937,18823627-18823688,18823465-18823526	AT2G45690.1  CDS  gene_syn F17K2.22, PEX16, SHRUNKEN SEED 1, SSE, SSE1  gene SSE1  function Encodes a protein with similarity to yeast Pep16p, a membrane localized protein involved in peroxisome assembly and protein-trafficking. SSE1 mutant seeds do not accumulate oils and dessicated seeds have a shrunken appearance. Involved in protein and oil body biogenesis. SSE is expressed during seed development, reaching the highest peak in mature siliques. Expression in leaves and roots is low compared to cotyledons and flowers. Located in peroxisomes and endoplasmic reticulum. Homologous to the peroxin PEX16 and complements the pex16 mutants of the yeast Yarrowia lipolytica.  go_component peroxisome|GO:0005777|15173561|IDA  go_component peroxisome|GO:0005777|16040658|IDA  go_component endoplasmic reticulum membrane|GO:0005789|16040658|IDA  go_process fatty acid biosynthetic process|GO:0006633|15173561|IMP  go_process peroxisome organization|GO:0007031|10195899|IGI  go_process peroxisome organization|GO:0007031|15173561|IMP  go_process peroxisome organization|GO:0007031|17478547|IMP  go_function molecular_function|GO:0003674||ND  product SSE1 (SHRUNKEN SEED 1)  note SHRUNKEN SEED 1 (SSE1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: peroxisome organization, fatty acid biosynthetic process; LOCATED IN: peroxisome, endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Peroxisome membrane protein, Pex16 (InterPro:IPR013919); Has 184 Blast hits to 183 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 91; Fungi - 62; Plants - 20; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT2G45690.1p  transcript_id AT2G45690.1  protein_id AT2G45690.1p  transcript_id AT2G45690.1  
At2g45695	chr2:018826043	0.0	W/18826043-18826065,18826283-18826364,18826448-18826530,18826627-18826744	AT2G45695.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ubiquitin related modifier 1 (InterPro:IPR015221), Ubiquitin-related modifier 1 (InterPro:IPR017188), Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp (InterPro:IPR016155); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61113.1); Has 238 Blast hits to 238 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 93; Fungi - 72; Plants - 18; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT2G45695.1p  transcript_id AT2G45695.1  protein_id AT2G45695.1p  transcript_id AT2G45695.1  
At2g45700	chr2:018829873	0.0	C/18829873-18830505,18829541-18829735,18829074-18829460,18828814-18828877,18828498-18828715,18828290-18828397,18827946-18828051,18827655-18827866,18827440-18827543,18827216-18827360	AT2G45700.1  CDS  gene_syn F4I18.32  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product sterile alpha motif (SAM) domain-containing protein  note sterile alpha motif (SAM) domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sterile alpha motif-type (InterPro:IPR013761), Sterile alpha motif SAM (InterPro:IPR001660), Sterile alpha motif homology (InterPro:IPR010993), DNA repair metallo-beta-lactamase (InterPro:IPR011084); BEST Arabidopsis thaliana protein match is: SNM1 (SENSITIVE TO NITROGEN MUSTARD 1) (TAIR:AT3G26680.3); Has 1623 Blast hits to 1583 proteins in 240 species: Archae - 69; Bacteria - 140; Metazoa - 760; Fungi - 183; Plants - 188; Viruses - 0; Other Eukaryotes - 283 (source: NCBI BLink).  protein_id AT2G45700.1p  transcript_id AT2G45700.1  protein_id AT2G45700.1p  transcript_id AT2G45700.1  
At2g45710	chr2:018831243	0.0	W/18831243-18831245,18831520-18831621,18831756-18831784,18831879-18831999	AT2G45710.1  CDS  gene_syn F4I18.31  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S27 (RPS27A)  note 40S ribosomal protein S27 (RPS27A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, nucleolus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein, zinc-binding (InterPro:IPR011332), Ribosomal protein S27e (InterPro:IPR000592); BEST Arabidopsis thaliana protein match is: ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27); structural constituent of ribosome (TAIR:AT3G61110.1); Has 690 Blast hits to 690 proteins in 269 species: Archae - 76; Bacteria - 0; Metazoa - 297; Fungi - 98; Plants - 99; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).  protein_id AT2G45710.1p  transcript_id AT2G45710.1  protein_id AT2G45710.1p  transcript_id AT2G45710.1  
At2g45720	chr2:018834468	0.0	W/18834468-18836129	AT2G45720.1  CDS  gene_syn F4I18.30  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product armadillo/beta-catenin repeat family protein  note armadillo/beta-catenin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein (TAIR:AT1G01830.3); Has 1636 Blast hits to 1049 proteins in 150 species: Archae - 2; Bacteria - 16; Metazoa - 365; Fungi - 196; Plants - 864; Viruses - 0; Other Eukaryotes - 193 (source: NCBI BLink).  protein_id AT2G45720.1p  transcript_id AT2G45720.1  protein_id AT2G45720.1p  transcript_id AT2G45720.1  
At2g45720	chr2:018834468	0.0	W/18834468-18836129	AT2G45720.2  CDS  gene_syn F4I18.30  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product armadillo/beta-catenin repeat family protein  note armadillo/beta-catenin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein (TAIR:AT1G01830.3); Has 1636 Blast hits to 1049 proteins in 150 species: Archae - 2; Bacteria - 16; Metazoa - 365; Fungi - 196; Plants - 864; Viruses - 0; Other Eukaryotes - 193 (source: NCBI BLink).  protein_id AT2G45720.2p  transcript_id AT2G45720.2  protein_id AT2G45720.2p  transcript_id AT2G45720.2  
At2g45730	chr2:018838978	0.0	C/18838978-18839123,18838745-18838872,18838518-18838623,18838348-18838429,18838185-18838255,18838057-18838098,18837810-18837934,18837627-18837720,18837407-18837509,18837154-18837317,18836971-18837076,18836709-18836795,18836519-18836605	AT2G45730.1  CDS  gene_syn F4I18.29  go_process translational initiation|GO:0006413||IEA  go_process regulation of translational initiation|GO:0006446||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of translational initiation|GO:0006446||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product eukaryotic initiation factor 3 gamma subunit family protein  note eukaryotic initiation factor 3 gamma subunit family protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation, regulation of translational initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Eukaryotic initiation factor 3, gamma subunit (InterPro:IPR007316), tRNA (adenine-N(1)-)-methyltransferase, non-catalytic TRM6 subunit (InterPro:IPR017423); Has 291 Blast hits to 275 proteins in 145 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 98; Plants - 21; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT2G45730.1p  transcript_id AT2G45730.1  protein_id AT2G45730.1p  transcript_id AT2G45730.1  
At2g45740	chr2:018839865	0.0	W/18839865-18840059,18840135-18840209,18840292-18840366,18840461-18840541,18840631-18840705,18840791-18840964,18841067-18841102	AT2G45740.1  CDS  gene_syn F4I18.28, PEX11D  gene PEX11D  function member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation.  go_component mitochondrion|GO:0005739|15276431|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component peroxisomal membrane|GO:0005778||ISS  go_component integral to peroxisomal membrane|GO:0005779|17220199|IDA  go_process peroxisome organization|GO:0007031|17478547|IMP  go_process peroxisome fission|GO:0016559|17220199|IMP  go_process peroxisome fission|GO:0016559|18539750|IMP  go_process peroxisome fission|GO:0016559||ISS  go_function molecular_function|GO:0003674||ND  product PEX11D  note PEX11D; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: peroxisome fission, peroxisome organization; LOCATED IN: mitochondrion, peroxisomal membrane, peroxisome, chloroplast, integral to peroxisomal membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peroxisomal biogenesis factor 11 (InterPro:IPR008733); BEST Arabidopsis thaliana protein match is: PEX11E (TAIR:AT3G61070.2); Has 190 Blast hits to 190 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 23; Plants - 104; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT2G45740.1p  transcript_id AT2G45740.1  protein_id AT2G45740.1p  transcript_id AT2G45740.1  
At2g45740	chr2:018839865	0.0	W/18839865-18840059,18840135-18840209,18840292-18840366,18840461-18840541,18840631-18840705,18840791-18840964,18841067-18841102	AT2G45740.2  CDS  gene_syn F4I18.28, PEX11D  gene PEX11D  function member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation.  go_component mitochondrion|GO:0005739|15276431|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component peroxisomal membrane|GO:0005778||ISS  go_component integral to peroxisomal membrane|GO:0005779|17220199|IDA  go_process peroxisome organization|GO:0007031|17478547|IMP  go_process peroxisome fission|GO:0016559|17220199|IMP  go_process peroxisome fission|GO:0016559|18539750|IMP  go_process peroxisome fission|GO:0016559||ISS  go_function molecular_function|GO:0003674||ND  product PEX11D  note PEX11D; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: peroxisome fission, peroxisome organization; LOCATED IN: mitochondrion, peroxisomal membrane, peroxisome, chloroplast, integral to peroxisomal membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peroxisomal biogenesis factor 11 (InterPro:IPR008733); BEST Arabidopsis thaliana protein match is: PEX11E (TAIR:AT3G61070.2); Has 190 Blast hits to 190 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 23; Plants - 104; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT2G45740.2p  transcript_id AT2G45740.2  protein_id AT2G45740.2p  transcript_id AT2G45740.2  
At2g45740	chr2:018839865	0.0	W/18839865-18840059,18840135-18840209,18840292-18840366,18840461-18840541,18840631-18840705,18840791-18840964,18841067-18841102	AT2G45740.3  CDS  gene_syn F4I18.28, PEX11D  gene PEX11D  function member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation.  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component peroxisomal membrane|GO:0005778||ISS  go_component integral to peroxisomal membrane|GO:0005779|17220199|IDA  go_process peroxisome organization|GO:0007031|17478547|IMP  go_process peroxisome fission|GO:0016559|17220199|IMP  go_process peroxisome fission|GO:0016559|18539750|IMP  go_process peroxisome fission|GO:0016559||ISS  go_function molecular_function|GO:0003674||ND  product PEX11D  note PEX11D; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: peroxisome fission, peroxisome organization; LOCATED IN: peroxisomal membrane, chloroplast, peroxisome, integral to peroxisomal membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peroxisomal biogenesis factor 11 (InterPro:IPR008733); BEST Arabidopsis thaliana protein match is: PEX11E (TAIR:AT3G61070.2); Has 190 Blast hits to 190 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 23; Plants - 104; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT2G45740.3p  transcript_id AT2G45740.3  protein_id AT2G45740.3p  transcript_id AT2G45740.3  
At2g45750	chr2:018842655	0.0	W/18842655-18843308,18843868-18844078,18844158-18844458,18844530-18844931,18845016-18845343	AT2G45750.1  CDS  gene_syn F4I18.27  go_process biological_process|GO:0008150||ND  product dehydration-responsive family protein  note dehydration-responsive family protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive family protein (TAIR:AT4G00750.1); Has 539 Blast hits to 529 proteins in 54 species: Archae - 0; Bacteria - 53; Metazoa - 0; Fungi - 0; Plants - 479; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT2G45750.1p  transcript_id AT2G45750.1  protein_id AT2G45750.1p  transcript_id AT2G45750.1  
At2g45760	chr2:018847125	0.0	C/18847125-18847748	AT2G45760.1  CDS  gene_syn BAL, BAP2, BON ASSOCIATION PROTEIN 1-LIKE, BON ASSOCIATION PROTEIN 2, F4I18.26  gene BAP2  function encodes a protein that is similar to BONZAI1-binding protein BAP1.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product BAP2 (BON ASSOCIATION PROTEIN 2)  note BON ASSOCIATION PROTEIN 2 (BAP2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: BAP1 (BON ASSOCIATION PROTEIN 1); phospholipid binding / protein binding (TAIR:AT3G61190.1); Has 55 Blast hits to 55 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G45760.1p  transcript_id AT2G45760.1  protein_id AT2G45760.1p  transcript_id AT2G45760.1  
At2g45770	chr2:018851248	0.0	W/18851248-18851553,18851661-18851765,18851842-18851915,18852027-18852085,18852197-18852234,18852407-18852527,18852615-18852683,18852776-18852858,18852974-18853042,18853138-18853200,18853289-18853402	AT2G45770.1  CDS  gene_syn CHLOROPLAST SRP RECEPTOR HOMOLOG, ALPHA SUBUNIT CPFTSY, CPFTSY, F4I18.25, FERRIC CHELATE REDUCTASE DEFECTIVE 4, FRD4  gene CPFTSY  function chloroplast SRP receptor homolog, alpha subunit CPFTSY. Required for LHCP integration into isolated thylakoids.  go_component chloroplast|GO:0009507|18431481|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function GTP binding|GO:0005525||IEA  go_function 7S RNA binding|GO:0008312||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component signal recognition particle, endoplasmic reticulum targeting|GO:0005786||ISS  go_component chloroplast|GO:0009507|16813577|IDA  go_component chloroplast thylakoid|GO:0009534|10636840|NAS  go_process protein targeting|GO:0006605||ISS  go_process photosynthetic electron transport in photosystem II|GO:0009772|17513500|IMP  go_process thylakoid membrane organization|GO:0010027|18764927|IMP  go_process protein import into chloroplast thylakoid membrane|GO:0045038|17513500|IMP  go_function GTP binding|GO:0005525||ISS  product CPFTSY; 7S RNA binding / GTP binding / nucleoside-triphosphatase/ nucleotide binding  note CPFTSY; FUNCTIONS IN: 7S RNA binding, nucleoside-triphosphatase activity, GTP binding, nucleotide binding; INVOLVED IN: protein import into chloroplast thylakoid membrane, thylakoid membrane organization, protein targeting, photosynthetic electron transport in photosystem II; LOCATED IN: chloroplast, signal recognition particle, endoplasmic reticulum targeting, chloroplast thylakoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Signal recognition particle, SRP54 subunit, helical bundle (InterPro:IPR013822), Signal recognition particle, SRP54 subunit, GTPase (InterPro:IPR000897), Cell division transporter substrate-binding protein FtsY (InterPro:IPR004390); BEST Arabidopsis thaliana protein match is: CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT); 7S RNA binding / GTP binding / mRNA binding / signal sequence binding (TAIR:AT5G03940.1); Has 11366 Blast hits to 11364 proteins in 1582 species: Archae - 310; Bacteria - 5631; Metazoa - 249; Fungi - 192; Plants - 139; Viruses - 0; Other Eukaryotes - 4845 (source: NCBI BLink).  protein_id AT2G45770.1p  transcript_id AT2G45770.1  protein_id AT2G45770.1p  transcript_id AT2G45770.1  
At2g45780	chr2:018854555	0.0	C/18854555-18855184	AT2G45780.1  ncRNA  gene_syn F4I18.24  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G45780.1  
At2g45790	chr2:018855876	0.0	W/18855876-18855989,18856082-18856148,18856547-18856623,18856707-18856742,18856869-18856924,18857009-18857108,18857189-18857284,18857370-18857459,18857558-18857609,18857701-18857753	AT2G45790.1  CDS  gene_syn ATPMM, F4I18.23, PHOSPHOMANNOMUTASE, PMM  gene PMM  function encodes a phosphomannomutase, involved in ascorbate biosynthesis  go_component cytoplasm|GO:0005737||IEA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component cytoplasm|GO:0005737||ISS  go_process mannose biosynthetic process|GO:0019307||ISS  go_process L-ascorbic acid biosynthetic process|GO:0019853|17217471|IMP  go_function phosphomannomutase activity|GO:0004615|17217471|IDA  go_function phosphomannomutase activity|GO:0004615|17217471|IGI  go_function phosphomannomutase activity|GO:0004615||ISS  product PMM (PHOSPHOMANNOMUTASE); phosphomannomutase  note PHOSPHOMANNOMUTASE (PMM); FUNCTIONS IN: phosphomannomutase activity; INVOLVED IN: L-ascorbic acid biosynthetic process, response to salt stress, mannose biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Eukaryotic phosphomannomutase (InterPro:IPR005002), HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379); Has 736 Blast hits to 735 proteins in 178 species: Archae - 0; Bacteria - 36; Metazoa - 171; Fungi - 116; Plants - 37; Viruses - 0; Other Eukaryotes - 376 (source: NCBI BLink).  protein_id AT2G45790.1p  transcript_id AT2G45790.1  protein_id AT2G45790.1p  transcript_id AT2G45790.1  
At2g45800	chr2:018858653	0.0	C/18858653-18858823,18858153-18858569	AT2G45800.2  CDS  gene_syn F4I18.22  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product LIM domain-containing protein  note LIM domain-containing protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781); BEST Arabidopsis thaliana protein match is: LIM domain-containing protein (TAIR:AT3G61230.1); Has 2011 Blast hits to 1396 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 1471; Fungi - 4; Plants - 368; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).  protein_id AT2G45800.2p  transcript_id AT2G45800.2  protein_id AT2G45800.2p  transcript_id AT2G45800.2  
At2g45800	chr2:018858873	0.0	C/18858873-18859007,18858653-18858781,18858153-18858569	AT2G45800.1  CDS  gene_syn F4I18.22  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product LIM domain-containing protein  note LIM domain-containing protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781); BEST Arabidopsis thaliana protein match is: LIM domain-containing protein (TAIR:AT3G61230.1); Has 4928 Blast hits to 3130 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 4254; Fungi - 25; Plants - 268; Viruses - 0; Other Eukaryotes - 381 (source: NCBI BLink).  protein_id AT2G45800.1p  transcript_id AT2G45800.1  protein_id AT2G45800.1p  transcript_id AT2G45800.1  
At2g45810	chr2:018859836	0.0	W/18859836-18860212,18860300-18860360,18860448-18860682,18860830-18861068,18861290-18861541,18861635-18861815,18861893-18861981,18862081-18862154,18862240-18862318	AT2G45810.1  CDS  gene_syn F4I18.21  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_component cellular_component|GO:0005575||ND  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD/DEAH box helicase, putative  note DEAD/DEAH box helicase, putative; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (RH12) (TAIR:AT3G61240.2); Has 52931 Blast hits to 37964 proteins in 1941 species: Archae - 402; Bacteria - 12184; Metazoa - 13805; Fungi - 6217; Plants - 2991; Viruses - 299; Other Eukaryotes - 17033 (source: NCBI BLink).  protein_id AT2G45810.1p  transcript_id AT2G45810.1  protein_id AT2G45810.1p  transcript_id AT2G45810.1  
At2g45820	chr2:018864423	0.0	C/18864423-18864576,18863679-18863732,18863496-18863583,18863147-18863423	AT2G45820.1  CDS  gene_syn F4I18.20  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product DNA-binding protein, putative  note DNA-binding protein, putative; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal region (InterPro:IPR005516), Remorin, N-terminal region (InterPro:IPR005518); BEST Arabidopsis thaliana protein match is: DNA-binding family protein / remorin family protein (TAIR:AT3G61260.1); Has 2170 Blast hits to 1469 proteins in 249 species: Archae - 2; Bacteria - 278; Metazoa - 371; Fungi - 179; Plants - 300; Viruses - 4; Other Eukaryotes - 1036 (source: NCBI BLink).  protein_id AT2G45820.1p  transcript_id AT2G45820.1  protein_id AT2G45820.1p  transcript_id AT2G45820.1  
At2g45830	chr2:018866324	0.0	W/18866324-18866503,18866607-18867160,18867252-18867444,18867531-18867595,18867676-18867886,18867976-18868344	AT2G45830.1  CDS  gene_syn DOWNSTREAM TARGET OF AGL15 2, DTA2, F4I18.19  gene DTA2  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DTA2 (DOWNSTREAM TARGET OF AGL15 2)  note DOWNSTREAM TARGET OF AGL15 2 (DTA2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: stem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro:IPR008539); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61270.1); Has 424 Blast hits to 420 proteins in 80 species: Archae - 0; Bacteria - 2; Metazoa - 201; Fungi - 87; Plants - 117; Viruses - 4; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT2G45830.1p  transcript_id AT2G45830.1  protein_id AT2G45830.1p  transcript_id AT2G45830.1  
At2g45830	chr2:018866850	0.0	W/18866850-18867160,18867252-18867444,18867531-18867595,18867676-18867886,18867976-18868344	AT2G45830.2  CDS  gene_syn DOWNSTREAM TARGET OF AGL15 2, DTA2, F4I18.19  gene DTA2  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DTA2 (DOWNSTREAM TARGET OF AGL15 2)  note DOWNSTREAM TARGET OF AGL15 2 (DTA2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: stem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro:IPR008539); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61270.1); Has 420 Blast hits to 417 proteins in 80 species: Archae - 0; Bacteria - 2; Metazoa - 200; Fungi - 87; Plants - 114; Viruses - 4; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT2G45830.2p  transcript_id AT2G45830.2  protein_id AT2G45830.2p  transcript_id AT2G45830.2  
At2g45840	chr2:018869286	0.0	W/18869286-18869444,18869532-18870118,18870266-18870443,18870542-18870606,18870702-18870912,18871116-18871487	AT2G45840.1  CDS  gene_syn F4I18.18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro:IPR008539); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61280.1); Has 458 Blast hits to 454 proteins in 94 species: Archae - 0; Bacteria - 38; Metazoa - 198; Fungi - 75; Plants - 113; Viruses - 5; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT2G45840.1p  transcript_id AT2G45840.1  protein_id AT2G45840.1p  transcript_id AT2G45840.1  
At2g45850	chr2:018873007	0.0	C/18873007-18873457,18872672-18872739,18872453-18872584,18872205-18872366,18871901-18872134	AT2G45850.1  CDS  gene_syn F4I18.17  go_function DNA binding|GO:0003677||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product DNA-binding family protein  note DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding, conserved site (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: DNA-binding family protein (TAIR:AT3G61310.1); Has 456 Blast hits to 454 proteins in 36 species: Archae - 0; Bacteria - 4; Metazoa - 27; Fungi - 9; Plants - 411; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT2G45850.1p  transcript_id AT2G45850.1  protein_id AT2G45850.1p  transcript_id AT2G45850.1  
At2g45850	chr2:018873007	0.0	C/18873007-18873457,18872672-18872739,18872453-18872584,18872205-18872366,18871901-18872134	AT2G45850.2  CDS  gene_syn F4I18.17  go_function DNA binding|GO:0003677||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product DNA-binding family protein  note DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding, conserved site (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: DNA-binding family protein (TAIR:AT3G61310.1); Has 456 Blast hits to 454 proteins in 36 species: Archae - 0; Bacteria - 4; Metazoa - 27; Fungi - 9; Plants - 411; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT2G45850.2p  transcript_id AT2G45850.2  protein_id AT2G45850.2p  transcript_id AT2G45850.2  
At2g45860	chr2:018875511	0.0	C/18875511-18875568,18875364-18875425,18874913-18875032	AT2G45860.1  CDS  gene_syn F4I18.16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 17 Blast hits to 17 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G45860.1p  transcript_id AT2G45860.1  protein_id AT2G45860.1p  transcript_id AT2G45860.1  
At2g45870	chr2:018875928	0.0	W/18875928-18876608,18876683-18876850,18876966-18877172,18877264-18877440	AT2G45870.1  CDS  gene_syn F4I18.15  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0187 (InterPro:IPR007913); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61320.1); Has 878 Blast hits to 878 proteins in 311 species: Archae - 0; Bacteria - 688; Metazoa - 0; Fungi - 83; Plants - 66; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT2G45870.1p  transcript_id AT2G45870.1  protein_id AT2G45870.1p  transcript_id AT2G45870.1  
At2g45880	chr2:018881411	0.0	C/18881411-18881824,18880963-18881235,18880649-18880726,18880364-18880567,18880058-18880252,18879775-18879939,18879410-18879670,18879106-18879324,18878800-18879019,18878674-18878720	AT2G45880.1  CDS  gene_syn BAM7, BETA-AMYLASE 4, BETA-AMYLASE 7, BMY4, F4I18.14  gene BAM7  go_process polysaccharide catabolic process|GO:0000272||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process cellulose biosynthetic process|GO:0030244||IEA  go_function catalytic activity|GO:0003824||IEA  go_function beta-amylase activity|GO:0016161||IEA  go_function cation binding|GO:0043169||IEA  go_component cellular_component|GO:0005575||ND  go_function beta-amylase activity|GO:0016161||ISS  product BAM7 (BETA-AMYLASE 7); beta-amylase/ catalytic/ cation binding  note BETA-AMYLASE 7 (BAM7); FUNCTIONS IN: cation binding, beta-amylase activity, catalytic activity; INVOLVED IN: cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14, conserved site (InterPro:IPR018238), Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), BZR1, transcriptional repressor (InterPro:IPR008540); BEST Arabidopsis thaliana protein match is: BAM2 (BETA-AMYLASE 2); beta-amylase (TAIR:AT4G00490.1); Has 614 Blast hits to 612 proteins in 121 species: Archae - 0; Bacteria - 68; Metazoa - 0; Fungi - 3; Plants - 482; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT2G45880.1p  transcript_id AT2G45880.1  protein_id AT2G45880.1p  transcript_id AT2G45880.1  
At2g45890	chr2:018883540	0.0	W/18883540-18883816,18883882-18883998,18884086-18884228,18884315-18884389,18884469-18884774,18884860-18885210,18885318-18885440	AT2G45890.1  CDS  gene_syn ATROPGEF4, F4I18.13, RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 4, ROPGEF4  gene ROPGEF4  function Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function Rho guanyl-nucleotide exchange factor activity|GO:0005089|15980860|ISS  product ROPGEF4 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 4); Rho guanyl-nucleotide exchange factor  note RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 4 (ROPGEF4); FUNCTIONS IN: Rho guanyl-nucleotide exchange factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: inflorescence meristem, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: Rho guanyl-nucleotide exchange factor (TAIR:AT4G00460.2); Has 172 Blast hits to 171 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 172; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G45890.1p  transcript_id AT2G45890.1  protein_id AT2G45890.1p  transcript_id AT2G45890.1  
At2g45900	chr2:018888527	0.0	C/18888527-18888674,18888376-18888440,18887225-18888278,18887017-18887138,18886765-18886936,18886069-18886670	AT2G45900.1  CDS  gene_syn F4I18.12  go_component cellular_component|GO:0005575||ND  go_process response to gibberellin stimulus|GO:0009739|17933900|IEP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to gibberellin stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61380.1); Has 298 Blast hits to 280 proteins in 71 species: Archae - 0; Bacteria - 23; Metazoa - 49; Fungi - 28; Plants - 99; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).  protein_id AT2G45900.1p  transcript_id AT2G45900.1  protein_id AT2G45900.1p  transcript_id AT2G45900.1  
At2g45910	chr2:018894520	0.0	W/18894520-18894784,18894877-18894998,18895128-18895249,18895387-18895491,18895671-18895968,18896063-18896197,18896405-18896929,18897113-18897859,18898027-18898212	AT2G45910.1  CDS  gene_syn F4I18.11  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein / U-box domain-containing protein  note protein kinase family protein / U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), U box (InterPro:IPR003613), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein / U-box domain-containing protein (TAIR:AT3G49060.1); Has 92032 Blast hits to 90051 proteins in 3362 species: Archae - 123; Bacteria - 8431; Metazoa - 40368; Fungi - 7218; Plants - 19640; Viruses - 399; Other Eukaryotes - 15853 (source: NCBI BLink).  protein_id AT2G45910.1p  transcript_id AT2G45910.1  protein_id AT2G45910.1p  transcript_id AT2G45910.1  
At2g45920	chr2:018899363	0.0	W/18899363-18899584,18899663-18899784,18899884-18899988,18900160-18900391,18900491-18900814,18900900-18901097	AT2G45920.1  CDS  gene_syn F4I18.10  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  product U-box domain-containing protein  note U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein (TAIR:AT3G61390.2); Has 1934 Blast hits to 1751 proteins in 185 species: Archae - 10; Bacteria - 44; Metazoa - 291; Fungi - 128; Plants - 951; Viruses - 6; Other Eukaryotes - 504 (source: NCBI BLink).  protein_id AT2G45920.1p  transcript_id AT2G45920.1  protein_id AT2G45920.1p  transcript_id AT2G45920.1  
At2g45930	chr2:018902701	0.0	C/18902701-18902757,18901945-18902607	AT2G45930.1  CDS  gene_syn F4I18.9  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16090.1); Has 100 Blast hits to 100 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G45930.1p  transcript_id AT2G45930.1  protein_id AT2G45930.1p  transcript_id AT2G45930.1  
At2g45940	chr2:018903032	0.0	W/18903032-18903702,18903794-18904181	AT2G45940.1  CDS  gene_syn F4I18.8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16080.1); Has 135 Blast hits to 133 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G45940.1p  transcript_id AT2G45940.1  protein_id AT2G45940.1p  transcript_id AT2G45940.1  
At2g45950	chr2:018906932	0.0	C/18906932-18906967,18906402-18906626,18906129-18906320,18905942-18906052,18905737-18905806,18905229-18905320,18904982-18905154,18904673-18904832	AT2G45950.2  CDS  gene_syn ARABIDOPSIS SKP1-LIKE 20, ASK20, F4I18.7  gene ASK20  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function protein binding|GO:0005515||IEA  go_component SCF ubiquitin ligase complex|GO:0019005|12970487|ISS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product ASK20 (ARABIDOPSIS SKP1-LIKE 20); protein binding / ubiquitin-protein ligase  note ARABIDOPSIS SKP1-LIKE 20 (ASK20); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: SCF ubiquitin ligase complex; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: ASK21 (ARABIDOPSIS SKP1-LIKE 21); protein binding / ubiquitin-protein ligase (TAIR:AT3G61415.1); Has 1155 Blast hits to 1138 proteins in 198 species: Archae - 0; Bacteria - 9; Metazoa - 500; Fungi - 118; Plants - 313; Viruses - 9; Other Eukaryotes - 206 (source: NCBI BLink).  protein_id AT2G45950.2p  transcript_id AT2G45950.2  protein_id AT2G45950.2p  transcript_id AT2G45950.2  
At2g45950	chr2:018906932	0.0	C/18906932-18906967,18906402-18906626,18906129-18906320,18905942-18906052,18905737-18905806,18905229-18905320,18904982-18905154,18904717-18904832,18904611-18904624	AT2G45950.1  CDS  gene_syn ARABIDOPSIS SKP1-LIKE 20, ASK20, F4I18.7  gene ASK20  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function protein binding|GO:0005515||IEA  go_component SCF ubiquitin ligase complex|GO:0019005|12970487|ISS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product ASK20 (ARABIDOPSIS SKP1-LIKE 20); protein binding / ubiquitin-protein ligase  note ARABIDOPSIS SKP1-LIKE 20 (ASK20); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: SCF ubiquitin ligase complex; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: ASK21 (ARABIDOPSIS SKP1-LIKE 21); protein binding / ubiquitin-protein ligase (TAIR:AT3G61415.1); Has 1162 Blast hits to 1146 proteins in 198 species: Archae - 0; Bacteria - 9; Metazoa - 499; Fungi - 122; Plants - 313; Viruses - 9; Other Eukaryotes - 210 (source: NCBI BLink).  protein_id AT2G45950.1p  transcript_id AT2G45950.1  protein_id AT2G45950.1p  transcript_id AT2G45950.1  
At2g45960	chr2:018910450	0.0	W/18910450-18910777,18911003-18911298,18911379-18911519,18911608-18911703	AT2G45960.1  CDS  gene_syn ATHH2, F4I18.6, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B, PIP1;2, PIP1B, TMP-A, TRANSMEMBRANE PROTEIN A  gene PIP1B  function a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_component plasma membrane|GO:0005886|7920711|IDA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_process water transport|GO:0006833|7920711|IDA  go_process response to water deprivation|GO:0009414|12566583|IMP  go_process response to water deprivation|GO:0009414|16235111|IEP  go_process response to salt stress|GO:0009651|12566583|IMP  go_process response to salt stress|GO:0009651|16183846|IEP  go_function water channel activity|GO:0015250|7920711|IDA  go_function water channel activity|GO:0015250||ISS  product PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B); water channel  note NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B (PIP1B); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, response to salt stress, response to water deprivation, water transport; LOCATED IN: anchored to plasma membrane, plasma membrane, chloroplast, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A); water channel (TAIR:AT3G61430.2); Has 6735 Blast hits to 6710 proteins in 1246 species: Archae - 73; Bacteria - 2604; Metazoa - 1273; Fungi - 291; Plants - 1492; Viruses - 2; Other Eukaryotes - 1000 (source: NCBI BLink).  protein_id AT2G45960.1p  transcript_id AT2G45960.1  protein_id AT2G45960.1p  transcript_id AT2G45960.1  
At2g45960	chr2:018910450	0.0	W/18910450-18910777,18911003-18911298,18911379-18911523,18911608-18911744	AT2G45960.3  CDS  gene_syn ATHH2, F4I18.6, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B, PIP1;2, PIP1B, TMP-A, TRANSMEMBRANE PROTEIN A  gene PIP1B  function a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component plasma membrane|GO:0005886|7920711|IDA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_process water transport|GO:0006833|7920711|IDA  go_process response to water deprivation|GO:0009414|12566583|IMP  go_process response to water deprivation|GO:0009414|16235111|IEP  go_process response to salt stress|GO:0009651|12566583|IMP  go_process response to salt stress|GO:0009651|16183846|IEP  go_function water channel activity|GO:0015250|7920711|IDA  go_function water channel activity|GO:0015250||ISS  product PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B); water channel  note NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B (PIP1B); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, response to salt stress, response to water deprivation, water transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A); water channel (TAIR:AT3G61430.2); Has 6506 Blast hits to 6471 proteins in 1232 species: Archae - 77; Bacteria - 2577; Metazoa - 1127; Fungi - 286; Plants - 1478; Viruses - 0; Other Eukaryotes - 961 (source: NCBI BLink).  protein_id AT2G45960.3p  transcript_id AT2G45960.3  protein_id AT2G45960.3p  transcript_id AT2G45960.3  
At2g45960	chr2:018910450	0.0	W/18910450-18910777,18911003-18911298,18911379-18911579	AT2G45960.2  CDS  gene_syn ATHH2, F4I18.6, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B, PIP1;2, PIP1B, TMP-A, TRANSMEMBRANE PROTEIN A  gene PIP1B  function a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component plasma membrane|GO:0005886|7920711|IDA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_process water transport|GO:0006833|7920711|IDA  go_process response to water deprivation|GO:0009414|12566583|IMP  go_process response to water deprivation|GO:0009414|16235111|IEP  go_process response to salt stress|GO:0009651|12566583|IMP  go_process response to salt stress|GO:0009651|16183846|IEP  go_function water channel activity|GO:0015250|7920711|IDA  go_function water channel activity|GO:0015250||ISS  product PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B); water channel  note NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B (PIP1B); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, response to salt stress, response to water deprivation, water transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A); water channel (TAIR:AT3G61430.2); Has 6501 Blast hits to 6466 proteins in 1231 species: Archae - 77; Bacteria - 2573; Metazoa - 1127; Fungi - 286; Plants - 1478; Viruses - 0; Other Eukaryotes - 960 (source: NCBI BLink).  protein_id AT2G45960.2p  transcript_id AT2G45960.2  protein_id AT2G45960.2p  transcript_id AT2G45960.2  
At2g45970	chr2:018912548	0.0	C/18912548-18914161	AT2G45970.1  CDS  gene_syn CYP86A8, F4I18.5, LACERATA, LCR  gene CYP86A8  function Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at moderate levels in flowers, leaves, roots and stems.  go_component endomembrane system|GO:0012505||IEA  go_process fatty acid metabolic process|GO:0006631|15709153|IDA  go_function fatty acid (omega-1)-hydroxylase activity|GO:0008393|11493698|IDA  go_function fatty acid (omega-1)-hydroxylase activity|GO:0008393|15709153|IDA  go_function oxygen binding|GO:0019825||ISS  product CYP86A8; fatty acid (omega-1)-hydroxylase/ oxygen binding  note CYP86A8; FUNCTIONS IN: fatty acid (omega-1)-hydroxylase activity, oxygen binding; INVOLVED IN: fatty acid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP86A2 (CYTOCHROME P450 86 A2); fatty acid (omega-1)-hydroxylase/ oxygen binding (TAIR:AT4G00360.1); Has 20149 Blast hits to 20103 proteins in 1095 species: Archae - 19; Bacteria - 1503; Metazoa - 9206; Fungi - 3938; Plants - 4793; Viruses - 3; Other Eukaryotes - 687 (source: NCBI BLink).  protein_id AT2G45970.1p  transcript_id AT2G45970.1  protein_id AT2G45970.1p  transcript_id AT2G45970.1  
At2g45980	chr2:018917904	0.0	C/18917904-18918569,18917680-18917784	AT2G45980.1  CDS  gene_syn F4I18.37, F4I18_37  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00355.3); Has 57 Blast hits to 54 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G45980.1p  transcript_id AT2G45980.1  protein_id AT2G45980.1p  transcript_id AT2G45980.1  
At2g45990	chr2:018919402	0.0	W/18919402-18919479,18919621-18919701,18919821-18919910,18920012-18920178,18920279-18920348,18920452-18920531,18920624-18920686,18920788-18920864,18920943-18921043	AT2G45990.1  CDS  gene_syn F4I18.49  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 251 Blast hits to 251 proteins in 66 species: Archae - 0; Bacteria - 105; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).  protein_id AT2G45990.1p  transcript_id AT2G45990.1  protein_id AT2G45990.1p  transcript_id AT2G45990.1  
At2g45990	chr2:018919402	0.0	W/18919402-18919479,18919621-18919701,18919821-18919910,18920012-18920178,18920279-18920348,18920452-18920531,18920624-18920686,18920788-18920864,18920943-18921043	AT2G45990.2  CDS  gene_syn F4I18.49  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 251 Blast hits to 251 proteins in 66 species: Archae - 0; Bacteria - 105; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).  protein_id AT2G45990.2p  transcript_id AT2G45990.2  protein_id AT2G45990.2p  transcript_id AT2G45990.2  
At2g45990	chr2:018919402	0.0	W/18919402-18919479,18919621-18919701,18919821-18919910,18920012-18920178,18920279-18920348,18920452-18920531,18920624-18920686,18920803-18920864,18920943-18921043	AT2G45990.3  CDS  gene_syn F4I18.49  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 233 Blast hits to 233 proteins in 66 species: Archae - 0; Bacteria - 105; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).  protein_id AT2G45990.3p  transcript_id AT2G45990.3  protein_id AT2G45990.3p  transcript_id AT2G45990.3  
At2g45990	chr2:018919402	0.0	W/18919402-18919479,18919621-18919701,18919821-18919910,18920012-18920178,18920279-18920348,18920452-18920531,18920624-18920690	AT2G45990.4  CDS  gene_syn F4I18.49  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 202 Blast hits to 202 proteins in 63 species: Archae - 0; Bacteria - 97; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT2G45990.4p  transcript_id AT2G45990.4  protein_id AT2G45990.4p  transcript_id AT2G45990.4  
At2g46000	chr2:018921730	0.0	C/18921730-18922047,18921461-18921589,18921194-18921373	AT2G46000.1  CDS  gene_syn F4I18.48  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 19 Blast hits to 19 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G46000.1p  transcript_id AT2G46000.1  protein_id AT2G46000.1p  transcript_id AT2G46000.1  
At2g46020	chr2:018923304	0.0	W/18923304-18923477,18923775-18925049,18925173-18926480,18926651-18926763,18926982-18927069,18927165-18927251,18927363-18927455,18927766-18927849,18927927-18928130,18928253-18928495,18928569-18930116,18930206-18930697,18930806-18931054,18931146-18931769	AT2G46020.2  CDS  gene_syn ARABIDOPSIS THALIANA BRAHMA, ATBRM, BRAHMA, BRM, CHA2, CHR2, CHROMATIN REMODELING 2, T3F17.33  gene BRM  function Encodes a SWI/SNF chromatin remodeling ATPase that upregulates transcription of all three CUC genes and is involved in the formation and/or maintenance of boundary cells during embryogenesis. Also mediates repression of expression of seed storage proteins in vegetative tissues. Interacts strongly with AtSWI3C, also with AtSWI3B, but not with AtSWI3A or AtSWI3D.  go_component nucleus|GO:0005634|15371304|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component chromatin remodeling complex|GO:0016585|18508955|IDA  go_process organ boundary specification between lateral organs and the meristem|GO:0010199|16854978|IGI  go_process regulation of gene expression, epigenetic|GO:0040029|17293567|IMP  go_process ATP-dependent chromatin remodeling|GO:0043044|16854978|NAS  go_process ATP-dependent chromatin remodeling|GO:0043044|18508955|TAS  go_function DNA binding|GO:0003677|18508955|IDA  go_function DNA binding|GO:0003677||ISS  go_function helicase activity|GO:0004386||ISS  go_function ATP binding|GO:0005524||ISS  go_function transcription regulator activity|GO:0030528||ISS  product transcription regulatory protein SNF2, putative  note BRAHMA (BRM); FUNCTIONS IN: transcription regulator activity, helicase activity, DNA binding, ATP binding; INVOLVED IN: ATP-dependent chromatin remodeling, organ boundary specification between lateral organs and the meristem, regulation of gene expression, epigenetic; LOCATED IN: cytosol, nucleus, chromatin remodeling complex; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine-Leucine-Glutamine, QLQ (InterPro:IPR014978), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Bromodomain (InterPro:IPR001487), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SYD (SPLAYED); ATPase/ chromatin binding (TAIR:AT2G28290.3); Has 40165 Blast hits to 25706 proteins in 1470 species: Archae - 84; Bacteria - 3817; Metazoa - 14988; Fungi - 6138; Plants - 2190; Viruses - 254; Other Eukaryotes - 12694 (source: NCBI BLink).  protein_id AT2G46020.2p  transcript_id AT2G46020.2  protein_id AT2G46020.2p  transcript_id AT2G46020.2  
At2g46020	chr2:018923304	0.0	W/18923304-18923477,18923775-18925049,18925173-18926480,18926651-18926763,18926982-18927069,18927165-18927251,18927363-18927455,18927766-18927864,18927945-18928130,18928253-18928495,18928569-18930116,18930206-18930697,18930806-18931054,18931146-18931769	AT2G46020.1  CDS  gene_syn ARABIDOPSIS THALIANA BRAHMA, ATBRM, BRAHMA, BRM, CHA2, CHR2, CHROMATIN REMODELING 2, T3F17.33  gene BRM  function Encodes a SWI/SNF chromatin remodeling ATPase that upregulates transcription of all three CUC genes and is involved in the formation and/or maintenance of boundary cells during embryogenesis. Also mediates repression of expression of seed storage proteins in vegetative tissues. Interacts strongly with AtSWI3C, also with AtSWI3B, but not with AtSWI3A or AtSWI3D.  go_component nucleus|GO:0005634|15371304|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component chromatin remodeling complex|GO:0016585|18508955|IDA  go_process organ boundary specification between lateral organs and the meristem|GO:0010199|16854978|IGI  go_process regulation of gene expression, epigenetic|GO:0040029|17293567|IMP  go_process ATP-dependent chromatin remodeling|GO:0043044|16854978|NAS  go_process ATP-dependent chromatin remodeling|GO:0043044|18508955|TAS  go_function DNA binding|GO:0003677|18508955|IDA  go_function DNA binding|GO:0003677||ISS  go_function helicase activity|GO:0004386||ISS  go_function ATP binding|GO:0005524||ISS  go_function transcription regulator activity|GO:0030528||ISS  product transcription regulatory protein SNF2, putative  note BRAHMA (BRM); FUNCTIONS IN: transcription regulator activity, helicase activity, DNA binding, ATP binding; INVOLVED IN: ATP-dependent chromatin remodeling, organ boundary specification between lateral organs and the meristem, regulation of gene expression, epigenetic; LOCATED IN: cytosol, nucleus, chromatin remodeling complex; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine-Leucine-Glutamine, QLQ (InterPro:IPR014978), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), Bromodomain (InterPro:IPR001487), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SYD (SPLAYED); ATPase/ chromatin binding (TAIR:AT2G28290.3); Has 40303 Blast hits to 25872 proteins in 1496 species: Archae - 89; Bacteria - 3855; Metazoa - 14968; Fungi - 6133; Plants - 2192; Viruses - 356; Other Eukaryotes - 12710 (source: NCBI BLink).  protein_id AT2G46020.1p  transcript_id AT2G46020.1  protein_id AT2G46020.1p  transcript_id AT2G46020.1  
At2g46030	chr2:018933378	0.0	C/18933378-18933421,18933168-18933247,18932826-18932940,18932658-18932710,18932457-18932585,18932243-18932373	AT2G46030.1  CDS  gene_syn T3F17.32, UBC6, ubiquitin-conjugating enzyme 6  gene UBC6  function Ubiquitin conjugating enzyme E2  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|7948890|ISS  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|7948890|ISS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC6 (ubiquitin-conjugating enzyme 6); ubiquitin-protein ligase  note ubiquitin-conjugating enzyme 6 (UBC6); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), Ubiquitin-conjugating enzyme (InterPro:IPR015581); BEST Arabidopsis thaliana protein match is: UBC4 (UBIQUITIN CONJUGATING ENZYME 4); ubiquitin-protein ligase (TAIR:AT5G41340.1); Has 6410 Blast hits to 6410 proteins in 299 species: Archae - 0; Bacteria - 0; Metazoa - 3168; Fungi - 1157; Plants - 955; Viruses - 16; Other Eukaryotes - 1114 (source: NCBI BLink).  protein_id AT2G46030.1p  transcript_id AT2G46030.1  protein_id AT2G46030.1p  transcript_id AT2G46030.1  
At2g46040	chr2:018936881	0.0	C/18936881-18937807,18935684-18936445	AT2G46040.1  CDS  gene_syn T3F17.31  go_component intracellular|GO:0005622||IEA  go_function DNA binding|GO:0003677||IEA  go_component intracellular|GO:0005622||ISS  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product ARID/BRIGHT DNA-binding domain-containing protein / ELM2 domain-containing protein  note ARID/BRIGHT DNA-binding domain-containing protein / ELM2 domain-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: sperm cell, male gametophyte, cultured cell, pollen tube, seed; EXPRESSED DURING: M germinated pollen stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ELM2 (InterPro:IPR000949), AT-rich interaction region (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: ARID/BRIGHT DNA-binding domain-containing protein / ELM2 domain-containing protein / Myb-like DNA-binding domain-containing protein (TAIR:AT4G11400.1); Has 117 Blast hits to 109 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 2; Plants - 77; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G46040.1p  transcript_id AT2G46040.1  protein_id AT2G46040.1p  transcript_id AT2G46040.1  
At2g46050	chr2:018939262	0.0	W/18939262-18941034	AT2G46050.1  CDS  gene_syn T3F17.30  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G13600.1); Has 13187 Blast hits to 4624 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 24; Fungi - 20; Plants - 12909; Viruses - 0; Other Eukaryotes - 234 (source: NCBI BLink).  protein_id AT2G46050.1p  transcript_id AT2G46050.1  protein_id AT2G46050.1p  transcript_id AT2G46050.1  
At2g46060	chr2:018944829	0.0	C/18944829-18945000,18944602-18944660,18944409-18944517,18944180-18944289,18944033-18944101,18943409-18943951,18942768-18943318,18942615-18942679,18942463-18942542,18942270-18942374,18942047-18942186,18941829-18941957,18941564-18941732	AT2G46060.2  CDS  gene_syn T3F17.29  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product transmembrane protein-related  note transmembrane protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EGF-like region, conserved site (InterPro:IPR013032); Has 126 Blast hits to 126 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT2G46060.2p  transcript_id AT2G46060.2  protein_id AT2G46060.2p  transcript_id AT2G46060.2  
At2g46060	chr2:018944829	0.0	C/18944829-18945000,18944602-18944660,18944409-18944517,18944180-18944289,18944033-18944101,18943409-18943951,18942768-18943318,18942615-18942679,18942463-18942542,18942270-18942374,18942047-18942186,18941829-18941957,18941580-18941732,18941355-18941493	AT2G46060.1  CDS  gene_syn T3F17.29  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product transmembrane protein-related  note transmembrane protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EGF-like region, conserved site (InterPro:IPR013032); Has 127 Blast hits to 127 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT2G46060.1p  transcript_id AT2G46060.1  protein_id AT2G46060.1p  transcript_id AT2G46060.1  
At2g46070	chr2:018947604	0.0	C/18947604-18947770,18947388-18947517,18947097-18947234,18946676-18947008,18946396-18946579,18946134-18946300	AT2G46070.1  CDS  gene_syn ATMPK12, MAPK12, MITOGEN-ACTIVATED PROTEIN KINASE 12, MPK12, T3F17.28  gene MPK12  function Encodes a MAP kinase protein. MPK12 interacts with the IBR5 protein phosphatase in vitro and in vivo, and it can be dephosphorylated and inactivated by IBR5. MPK12 appears to be a negative regulator of auxin signlaing. MPK12 RNAi lines are hypersensitive to auxin in root elongation and transcriptional response assays, but they appear to have normal sensitivity to ABA. MPK12 is a nuclear protein and its kinase activity is increased following auxin treatment. MPK12 transcripts are widely expressed in seedlings, but MPK12 expression is stronger in guard cells than in other cell types in mature plants.  go_component nucleus|GO:0005634|19000167|IDA  go_process signal transduction|GO:0007165|12119167|IC  go_process protein kinase cascade|GO:0007243|19000167|IC  go_process response to auxin stimulus|GO:0009733|19000167|IMP  go_process response to indolebutyric acid stimulus|GO:0080026|19000167|IMP  go_function MAP kinase activity|GO:0004707|11544109|ISS  go_function MAP kinase activity|GO:0004707|12119167|ISS  go_function kinase activity|GO:0016301|19000167|IDA  go_function kinase activity|GO:0016301||ISS  product MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12); MAP kinase/ kinase  note MITOGEN-ACTIVATED PROTEIN KINASE 12 (MPK12); FUNCTIONS IN: MAP kinase activity, kinase activity; INVOLVED IN: response to auxin stimulus, signal transduction, protein kinase cascade, response to indolebutyric acid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), JNK MAP kinase (InterPro:IPR008351), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4); MAP kinase/ kinase (TAIR:AT4G01370.1); Has 91701 Blast hits to 90635 proteins in 3293 species: Archae - 49; Bacteria - 7507; Metazoa - 40565; Fungi - 8281; Plants - 17420; Viruses - 536; Other Eukaryotes - 17343 (source: NCBI BLink).  protein_id AT2G46070.1p  transcript_id AT2G46070.1  protein_id AT2G46070.1p  transcript_id AT2G46070.1  
At2g46080	chr2:018948317	0.0	C/18948317-18949360	AT2G46080.1  CDS  gene_syn T3F17.27  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: BPS1 (BYPASS 1) (TAIR:AT1G01550.2); Has 94 Blast hits to 83 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G46080.1p  transcript_id AT2G46080.1  protein_id AT2G46080.1p  transcript_id AT2G46080.1  
At2g46090	chr2:018950919	0.0	W/18950919-18951102,18951263-18951339,18951453-18951506,18951612-18951671,18951758-18951835,18951930-18951976,18952059-18952099,18952193-18952277,18952366-18952480,18952556-18952678,18952759-18952859,18952950-18953079	AT2G46090.1  CDS  gene_syn T3F17.26  function Encodes a putative sphingosine kinase (SphK) containing the five conserved domains (C1-C5) previously identified in SphKs.  go_process activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|GO:0007205||IEA  go_component mitochondrion|GO:0005739|18643979|IDA  go_process activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|GO:0007205||ISS  go_function diacylglycerol kinase activity|GO:0004143||ISS  go_function D-erythro-sphingosine kinase activity|GO:0017050|15665242|TAS  product diacylglycerol kinase family protein  note diacylglycerol kinase family protein; FUNCTIONS IN: diacylglycerol kinase activity, D-erythro-sphingosine kinase activity; INVOLVED IN: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00147 (InterPro:IPR005218), Diacylglycerol kinase, catalytic region (InterPro:IPR001206); Has 3140 Blast hits to 3139 proteins in 795 species: Archae - 6; Bacteria - 2048; Metazoa - 308; Fungi - 78; Plants - 82; Viruses - 0; Other Eukaryotes - 618 (source: NCBI BLink).  protein_id AT2G46090.1p  transcript_id AT2G46090.1  protein_id AT2G46090.1p  transcript_id AT2G46090.1  
At2g46100	chr2:018953326	0.0	W/18953326-18953686,18953754-18953908,18953989-18954055,18954209-18954260,18954380-18954467	AT2G46100.1  CDS  gene_syn T3F17.25  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04890.1); Has 88 Blast hits to 88 proteins in 37 species: Archae - 0; Bacteria - 47; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G46100.1p  transcript_id AT2G46100.1  protein_id AT2G46100.1p  transcript_id AT2G46100.1  
At2g46100	chr2:018953326	0.0	W/18953326-18953686,18953754-18954082	AT2G46100.2  CDS  gene_syn T3F17.25  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04890.2); Has 36 Blast hits to 36 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G46100.2p  transcript_id AT2G46100.2  protein_id AT2G46100.2p  transcript_id AT2G46100.2  
At2g46110	chr2:018956010	0.0	C/18956010-18956411,18955289-18955642,18955138-18955191,18954807-18955040	AT2G46110.1  CDS  gene_syn KETOPANTOATE HYDROXYMETHYLTRANSFERASE 1, KPHMT1, PANB1, T3F17.24  gene KPHMT1  function Encodes a ketopentoate hydroxymethyltransferase that appears to localize to the mitochondria. This protein is expected to play a role in pantothenate (vitamin B5) biosynthesis.  go_component mitochondrion|GO:0005739|14675432|IDA  go_process pantothenate biosynthetic process|GO:0015940|14675432|IGI  go_process pantothenate biosynthetic process|GO:0015940||ISS  go_function 3-methyl-2-oxobutanoate hydroxymethyltransferase activity|GO:0003864|14675432|IGI  go_function 3-methyl-2-oxobutanoate hydroxymethyltransferase activity|GO:0003864||ISS  product KPHMT1 (KETOPANTOATE HYDROXYMETHYLTRANSFERASE 1); 3-methyl-2-oxobutanoate hydroxymethyltransferase  note KETOPANTOATE HYDROXYMETHYLTRANSFERASE 1 (KPHMT1); FUNCTIONS IN: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity; INVOLVED IN: pantothenate biosynthetic process; LOCATED IN: mitochondrion; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Ketopantoate hydroxymethyltransferase (InterPro:IPR003700); BEST Arabidopsis thaliana protein match is: PANB2; 3-methyl-2-oxobutanoate hydroxymethyltransferase (TAIR:AT3G61530.2); Has 5631 Blast hits to 5631 proteins in 1148 species: Archae - 74; Bacteria - 2368; Metazoa - 2; Fungi - 87; Plants - 29; Viruses - 0; Other Eukaryotes - 3071 (source: NCBI BLink).  protein_id AT2G46110.1p  transcript_id AT2G46110.1  protein_id AT2G46110.1p  transcript_id AT2G46110.1  
At2g46120	chr2:018956641	0.0	W/18956641-18956713	AT2G46120.1  tRNA  gene_syn 39131.TRNA-GLU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Glu (anticodon: CTC)  transcript_id AT2G46120.1  
At2g46130	chr2:018957254	0.0	W/18957254-18957402,18957489-18957669	AT2G46130.1  CDS  gene_syn AtWRKY43, T3F17.22, WRKY43  gene WRKY43  function member of WRKY Transcription Factor; Group II-c  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY43; transcription factor  note WRKY43; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY24; transcription factor (TAIR:AT5G41570.1); Has 2000 Blast hits to 1711 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1988; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT2G46130.1p  transcript_id AT2G46130.1  protein_id AT2G46130.1p  transcript_id AT2G46130.1  
At2g46130	chr2:018957290	0.0	W/18957290-18957402,18957501-18957669	AT2G46130.2  CDS  gene_syn AtWRKY43, T3F17.22, WRKY43  gene WRKY43  function member of WRKY Transcription Factor; Group II-c  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY43; transcription factor  note WRKY43; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY24; transcription factor (TAIR:AT5G41570.1); Has 1869 Blast hits to 1595 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1860; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT2G46130.2p  transcript_id AT2G46130.2  protein_id AT2G46130.2p  transcript_id AT2G46130.2  
At2g46140	chr2:018959163	0.0	W/18959163-18959413,18960113-18960362	AT2G46140.1  CDS  gene_syn T3F17.21  go_component plasma membrane|GO:0005886|17644812|IDA  go_process response to desiccation|GO:0009269||IEA  go_process response to desiccation|GO:0009269||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||ISS  go_function molecular_function|GO:0003674||ND  product late embryogenesis abundant protein, putative / LEA protein, putative  note late embryogenesis abundant protein, putative / LEA protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy, response to desiccation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Water Stress and Hypersensitive response (InterPro:IPR013990), Late embryogenesis abundant protein 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: LEA14 (LATE EMBRYOGENESIS ABUNDANT 14) (TAIR:AT1G01470.1); Has 285 Blast hits to 285 proteins in 89 species: Archae - 0; Bacteria - 20; Metazoa - 0; Fungi - 0; Plants - 264; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G46140.1p  transcript_id AT2G46140.1  protein_id AT2G46140.1p  transcript_id AT2G46140.1  
At2g46150	chr2:018961424	0.0	W/18961424-18962089	AT2G46150.1  CDS  gene_syn T3F17.20  go_component plasma membrane|GO:0005886|17644812|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54200.1); Has 137 Blast hits to 136 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G46150.1p  transcript_id AT2G46150.1  protein_id AT2G46150.1p  transcript_id AT2G46150.1  
At2g46160	chr2:018963109	0.0	W/18963109-18963753	AT2G46160.1  CDS  gene_syn T3F17.19  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G61550.1); Has 5378 Blast hits to 5360 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 1727; Fungi - 311; Plants - 2598; Viruses - 47; Other Eukaryotes - 695 (source: NCBI BLink).  protein_id AT2G46160.1p  transcript_id AT2G46160.1  protein_id AT2G46160.1p  transcript_id AT2G46160.1  
At2g46170	chr2:018965410	0.0	W/18965410-18965611,18966028-18966208,18966306-18966447,18966698-18966940	AT2G46170.1  CDS  gene_syn T3F17.18  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum|GO:0005783||ISS  go_process biological_process|GO:0008150||ND  product reticulon family protein (RTNLB5)  note reticulon family protein (RTNLB5); INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: reticulon family protein (RTNLB6) (TAIR:AT3G61560.1); Has 951 Blast hits to 951 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 652; Fungi - 6; Plants - 274; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT2G46170.1p  transcript_id AT2G46170.1  protein_id AT2G46170.1p  transcript_id AT2G46170.1  
At2g46170	chr2:018965410	0.0	W/18965410-18965611,18966028-18966208,18966306-18966486	AT2G46170.2  CDS  gene_syn T3F17.18  go_component plasma membrane|GO:0005886|17644812|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum|GO:0005783||ISS  go_process biological_process|GO:0008150||ND  product reticulon family protein (RTNLB5)  note reticulon family protein (RTNLB5); INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: reticulon family protein (RTNLB6) (TAIR:AT3G61560.1); Has 242 Blast hits to 242 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 242; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G46170.2p  transcript_id AT2G46170.2  protein_id AT2G46170.2p  transcript_id AT2G46170.2  
At2g46180	chr2:018971063	0.0	C/18971063-18971260,18970877-18970975,18970666-18970788,18970411-18970545,18970100-18970208,18969952-18970016,18969669-18969836,18969453-18969566,18969185-18969325,18968690-18968986,18968538-18968603,18968252-18968454,18968120-18968174,18967773-18967967,18967482-18967691	AT2G46180.1  CDS  gene_syn GC4, T3F17.17, golgin candidate 4  gene GC4  function This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC4 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (169 aa) portion of the protein.  go_component Golgi apparatus|GO:0005794|18182439|IDA  go_process Golgi organization|GO:0007030|18182439|ISS  go_function molecular_function|GO:0003674||ND  product GC4 (golgin candidate 4)  note golgin candidate 4 (GC4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: Golgi organization; LOCATED IN: Golgi apparatus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GRIP (InterPro:IPR000237); BEST Arabidopsis thaliana protein match is: GDAP1 (GRIP-RELATED ARF-BINDING DOMAIN-CONTAINING ARABIDOPSIS PROTEIN 1); protein binding (TAIR:AT3G61570.1); Has 115481 Blast hits to 61389 proteins in 2044 species: Archae - 1098; Bacteria - 13386; Metazoa - 55026; Fungi - 8789; Plants - 4178; Viruses - 480; Other Eukaryotes - 32524 (source: NCBI BLink).  protein_id AT2G46180.1p  transcript_id AT2G46180.1  protein_id AT2G46180.1p  transcript_id AT2G46180.1  
At2g46190	chr2:018971799	0.0	W/18971799-18971959,18972074-18972116,18972226-18972515,18972666-18972804	AT2G46190.1  CDS  gene_syn T3F17.16  go_component mitochondrial matrix|GO:0005759||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrial matrix; CONTAINS InterPro DOMAIN/s: Mitochondrial glycoprotein (InterPro:IPR003428); BEST Arabidopsis thaliana protein match is: mitochondrial glycoprotein family protein / MAM33 family protein (TAIR:AT2G39790.1); Has 30 Blast hits to 30 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G46190.1p  transcript_id AT2G46190.1  protein_id AT2G46190.1p  transcript_id AT2G46190.1  
At2g46192	chr2:018973307	0.0	W/18973307-18974133	AT2G46192.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G46192.1  
At2g46200	chr2:018976492	0.0	C/18976492-18976646,18976028-18976349,18975858-18975941,18975720-18975785,18975547-18975619,18975150-18975463,18975032-18975072,18974864-18974957	AT2G46200.1  CDS  gene_syn T3F17.15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; Has 2761 Blast hits to 2162 proteins in 237 species: Archae - 7; Bacteria - 128; Metazoa - 1045; Fungi - 213; Plants - 85; Viruses - 3; Other Eukaryotes - 1280 (source: NCBI BLink).  protein_id AT2G46200.1p  transcript_id AT2G46200.1  protein_id AT2G46200.1p  transcript_id AT2G46200.1  
At2g46200	chr2:018976492	0.0	C/18976492-18976646,18976028-18976349,18975858-18975941,18975720-18975785,18975547-18975619,18975150-18975463,18975032-18975072,18974864-18974957	AT2G46200.2  CDS  gene_syn T3F17.15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; Has 2761 Blast hits to 2162 proteins in 237 species: Archae - 7; Bacteria - 128; Metazoa - 1045; Fungi - 213; Plants - 85; Viruses - 3; Other Eukaryotes - 1280 (source: NCBI BLink).  protein_id AT2G46200.2p  transcript_id AT2G46200.2  protein_id AT2G46200.2p  transcript_id AT2G46200.2  
At2g46210	chr2:018977542	0.0	W/18977542-18978891	AT2G46210.1  CDS  gene_syn T3F17.14  go_process lipid metabolic process|GO:0006629||IEA  go_process fatty acid biosynthetic process|GO:0006633||IEA  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water|GO:0016717||IEA  go_function heme binding|GO:0020037||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product delta-8 sphingolipid desaturase, putative  note delta-8 sphingolipid desaturase, putative; FUNCTIONS IN: oxidoreductase activity, oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water, iron ion binding, heme binding; INVOLVED IN: fatty acid biosynthetic process, lipid metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1 (InterPro:IPR005804), Cytochrome b5 (InterPro:IPR001199), Fatty acid/sphingolipid desaturase (InterPro:IPR012171); BEST Arabidopsis thaliana protein match is: delta-8 sphingolipid desaturase (SLD1) (TAIR:AT3G61580.1); Has 4212 Blast hits to 4149 proteins in 626 species: Archae - 1; Bacteria - 637; Metazoa - 966; Fungi - 1090; Plants - 641; Viruses - 2; Other Eukaryotes - 875 (source: NCBI BLink).  protein_id AT2G46210.1p  transcript_id AT2G46210.1  protein_id AT2G46210.1p  transcript_id AT2G46210.1  
At2g46220	chr2:018979655	0.0	W/18979655-18979992,18980170-18980557	AT2G46220.1  CDS  gene_syn T3F17.13  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2358 (InterPro:IPR018790); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79510.2); Has 129 Blast hits to 129 proteins in 50 species: Archae - 0; Bacteria - 61; Metazoa - 17; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G46220.1p  transcript_id AT2G46220.1  protein_id AT2G46220.1p  transcript_id AT2G46220.1  
At2g46225	chr2:018982113	0.0	W/18982113-18982205,18982629-18982711,18982792-18982942,18983034-18983133,18983217-18983309,18983403-18983487,18983556-18983608,18983706-18983788,18983919-18984074	AT2G46225.1  CDS  gene_syn ABIL1, Abi-1-like 1  gene ABIL1  function Encodes a subunit of the WAVE complex. The WAVE complex is required for activation of ARP2/3 complex which functions in actin microfilament nucleation and branching.  go_component SCAR complex|GO:0031209|15659634|TAS  go_process trichome morphogenesis|GO:0010090|15653407|TAS  go_process actin nucleation|GO:0045010|15653407|TAS  go_function molecular_function|GO:0003674||ND  product ABIL1 (Abi-1-like 1)  note Abi-1-like 1 (ABIL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: actin nucleation, trichome morphogenesis; LOCATED IN: SCAR complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: ABIL2 (ABL INTERACTOR-LIKE PROTEIN 2) (TAIR:AT3G49290.2); Has 409 Blast hits to 409 proteins in 52 species: Archae - 0; Bacteria - 4; Metazoa - 293; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT2G46225.1p  transcript_id AT2G46225.1  protein_id AT2G46225.1p  transcript_id AT2G46225.1  
At2g46225	chr2:018982113	0.0	W/18982113-18982205,18982629-18982711,18982792-18982942,18983034-18983133,18983217-18983487,18983556-18983608,18983706-18983788,18983919-18984074	AT2G46225.2  CDS  gene_syn ABIL1, Abi-1-like 1  gene ABIL1  function Encodes a subunit of the WAVE complex. The WAVE complex is required for activation of ARP2/3 complex which functions in actin microfilament nucleation and branching.  go_component SCAR complex|GO:0031209|15659634|TAS  go_process trichome morphogenesis|GO:0010090|15653407|TAS  go_process actin nucleation|GO:0045010|15653407|TAS  go_function molecular_function|GO:0003674||ND  product ABIL1 (Abi-1-like 1)  note Abi-1-like 1 (ABIL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: actin nucleation, trichome morphogenesis; LOCATED IN: SCAR complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3) (TAIR:AT5G24310.2); Has 408 Blast hits to 407 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 295; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT2G46225.2p  transcript_id AT2G46225.2  protein_id AT2G46225.2p  transcript_id AT2G46225.2  
At2g46230	chr2:018985780	0.0	C/18985780-18985850,18985644-18985703,18985461-18985566,18985266-18985308,18985114-18985186,18984938-18985025,18984694-18984798	AT2G46230.2  CDS  gene_syn T3F17.12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF652 (InterPro:IPR006984), Nucleotide binding protein, PINc (InterPro:IPR006596); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26530.1); Has 441 Blast hits to 441 proteins in 161 species: Archae - 15; Bacteria - 0; Metazoa - 185; Fungi - 119; Plants - 49; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT2G46230.2p  transcript_id AT2G46230.2  protein_id AT2G46230.2p  transcript_id AT2G46230.2  
At2g46230	chr2:018985780	0.0	C/18985780-18985850,18985644-18985703,18985461-18985566,18985266-18985308,18985114-18985186,18984938-18985025,18984742-18984798,18984573-18984651,18984459-18984472	AT2G46230.1  CDS  gene_syn T3F17.12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF652 (InterPro:IPR006984), Nucleotide binding protein, PINc (InterPro:IPR006596); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26530.1); Has 493 Blast hits to 493 proteins in 165 species: Archae - 21; Bacteria - 0; Metazoa - 192; Fungi - 143; Plants - 53; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT2G46230.1p  transcript_id AT2G46230.1  protein_id AT2G46230.1p  transcript_id AT2G46230.1  
At2g46240	chr2:018986586	0.0	W/18986586-18988517,18988628-18989827	AT2G46240.1  CDS  gene_syn ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, ATBAG6, BAG6, BCL-2-ASSOCIATED ATHANOGENE 6, T3F17.11  gene BAG6  function A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Expression of BAG6 in leaves was strongly induced by heat stress. Knockout mutants exhibited enhanced susceptibility to fungal pathogen Botrytis cinerea. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.  go_process apoptosis|GO:0006915||ISS  go_process response to heat|GO:0009408|16636050|IEP  go_process response to heat|GO:0009408|17059409|IEP  go_process response to cold|GO:0009409|16636050|IEP  go_process response to high light intensity|GO:0009644|17059409|IEP  go_process vegetative to reproductive phase transition|GO:0010228|16636050|IMP  go_process induction of programmed cell death|GO:0012502|16003391|IMP  go_process response to hydrogen peroxide|GO:0042542|17059409|IEP  go_process regulation of apoptosis|GO:0042981||ISS  go_process defense response to fungus|GO:0050832|16636050|IMP  go_function protein binding|GO:0005515||ISS  go_function calmodulin binding|GO:0005516|16003391|IPI  product BAG6 (BCL-2-ASSOCIATED ATHANOGENE 6); calmodulin binding / protein binding  note BCL-2-ASSOCIATED ATHANOGENE 6 (BAG6); FUNCTIONS IN: protein binding, calmodulin binding; INVOLVED IN: in 9 processes; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Apoptosis regulator Bcl-2 protein, BAG (InterPro:IPR003103), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28770.1); Has 18331 Blast hits to 12594 proteins in 776 species: Archae - 114; Bacteria - 1494; Metazoa - 9128; Fungi - 1717; Plants - 611; Viruses - 96; Other Eukaryotes - 5171 (source: NCBI BLink).  protein_id AT2G46240.1p  transcript_id AT2G46240.1  protein_id AT2G46240.1p  transcript_id AT2G46240.1  
At2g46250	chr2:018991386	0.0	W/18991386-18991676,18991971-18992087,18992203-18993201	AT2G46250.1  CDS  gene_syn T3F17.10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product myosin heavy chain-related  note myosin heavy chain-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41620.1); Has 6146 Blast hits to 4763 proteins in 378 species: Archae - 45; Bacteria - 458; Metazoa - 2892; Fungi - 364; Plants - 217; Viruses - 8; Other Eukaryotes - 2162 (source: NCBI BLink).  protein_id AT2G46250.1p  transcript_id AT2G46250.1  protein_id AT2G46250.1p  transcript_id AT2G46250.1  
At2g46255	chr2:018994632	0.0	W/18994632-18994856	AT2G46255.1  miRNA  gene_syn MICRORNA159C, MIR159C  gene MIR159C  function Encodes a microRNA that targets several MYB family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUUGGAUUGAAGGGAGCUCCU  product MIR159C (MICRORNA159C); miRNA  transcript_id AT2G46255.1  
At2g46260	chr2:018996111	0.0	W/18996111-18996366,18996492-18996626,18996764-18996882,18996983-18997046,18997274-18997553,18997632-18998463	AT2G46260.1  CDS  gene_syn T3F17.9  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product BTB/POZ domain-containing protein  note BTB/POZ domain-containing protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: ATPOB1; protein binding (TAIR:AT3G61600.1); Has 3167 Blast hits to 3141 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 3012; Fungi - 0; Plants - 79; Viruses - 9; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT2G46260.1p  transcript_id AT2G46260.1  protein_id AT2G46260.1p  transcript_id AT2G46260.1  
At2g46270	chr2:019000859	0.0	W/19000859-19000924,19001012-19001056,19001139-19001234,19001328-19001411,19001499-19001540,19001625-19001831,19001920-19001968,19002055-19002161,19002322-19002399,19002511-19002636,19002722-19002901	AT2G46270.2  CDS  gene_syn BZIP TRANSCRIPTION FACTOR, G-BOX BINDING FACTOR 3, GBF3, T3F17.8  gene GBF3  function encodes a bZIP G-box binding protein whose expression is induced by ABA. It has been shown to bind to Adh that contains the G-box and is induced by cold and water deprivation. GBF3 has been shown to be expressed mostly in the root and dark-grown leaves. GBF3 can act as homodimers and as heterodimers with GFB1, GBF2 and GBF4. In addition, GBF3  s DNA binding activity is enhanced by GIP1, GPRI1 and GPRI2.  go_component cytosol|GO:0005829|9193069|IDA  go_process response to abscisic acid stimulus|GO:0009737|8672884|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function sequence-specific DNA binding|GO:0043565|1373374|IDA  product GBF3 (G-BOX BINDING FACTOR 3); sequence-specific DNA binding / transcription factor  note G-BOX BINDING FACTOR 3 (GBF3); FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: cytosol; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), G-box binding, MFMR (InterPro:IPR012900), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: GBF2 (G-BOX BINDING FACTOR 2); DNA binding / sequence-specific DNA binding / transcription factor (TAIR:AT4G01120.1); Has 1814 Blast hits to 1813 proteins in 182 species: Archae - 0; Bacteria - 42; Metazoa - 659; Fungi - 81; Plants - 938; Viruses - 3; Other Eukaryotes - 91 (source: NCBI BLink).  protein_id AT2G46270.2p  transcript_id AT2G46270.2  protein_id AT2G46270.2p  transcript_id AT2G46270.2  
At2g46270	chr2:019000859	0.0	W/19000859-19000924,19001012-19001056,19001139-19001234,19001328-19001411,19001499-19001540,19001625-19001831,19001920-19001968,19002055-19002230,19002322-19002399,19002511-19002636,19002722-19002901	AT2G46270.1  CDS  gene_syn BZIP TRANSCRIPTION FACTOR, G-BOX BINDING FACTOR 3, GBF3, T3F17.8  gene GBF3  function encodes a bZIP G-box binding protein whose expression is induced by ABA. It has been shown to bind to Adh that contains the G-box and is induced by cold and water deprivation. GBF3 has been shown to be expressed mostly in the root and dark-grown leaves. GBF3 can act as homodimers and as heterodimers with GFB1, GBF2 and GBF4. In addition, GBF3  s DNA binding activity is enhanced by GIP1, GPRI1 and GPRI2.  go_component cytosol|GO:0005829|9193069|IDA  go_process response to abscisic acid stimulus|GO:0009737|8672884|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function sequence-specific DNA binding|GO:0043565|1373374|IDA  product GBF3 (G-BOX BINDING FACTOR 3); sequence-specific DNA binding / transcription factor  note G-BOX BINDING FACTOR 3 (GBF3); FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: cytosol; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), G-box binding, MFMR (InterPro:IPR012900), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: GBF2 (G-BOX BINDING FACTOR 2); DNA binding / sequence-specific DNA binding / transcription factor (TAIR:AT4G01120.1); Has 1674 Blast hits to 1674 proteins in 164 species: Archae - 0; Bacteria - 46; Metazoa - 662; Fungi - 27; Plants - 851; Viruses - 7; Other Eukaryotes - 81 (source: NCBI BLink).  protein_id AT2G46270.1p  transcript_id AT2G46270.1  protein_id AT2G46270.1p  transcript_id AT2G46270.1  
At2g46280	chr2:019005210	0.0	C/19005210-19005393,19004846-19005061,19004617-19004750,19004400-19004519,19004179-19004289	AT2G46280.3  CDS  gene_syn T3F17.7, TGF-BETA RECEPTOR INTERACTING PROTEIN 1, TIF3I1, TRIP-1  gene TRIP-1  function Encodes a homolog of mammalian TGF-beta receptor interacting protein. Co-immunoprecipitates with BRI1 and can be phosphorylated in vitro by BRI1 at specific sites (Thr-14, Thr-89, and either Thr-197 or Ser-198). May therefore be a cytoplasmic BRI1 substrate and involved in brassinosteroid regulated plant growth and development.The encoded protein has two DWD motifs. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|IPI  go_function nucleotide binding|GO:0000166||ISS  go_function protein binding|GO:0005515|15998311|IPI  go_function protein binding|GO:0005515|18223036|IPI  product TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1); nucleotide binding / protein binding  note TGF-BETA RECEPTOR INTERACTING PROTEIN 1 (TRIP-1); FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: response to cadmium ion, response to salt stress; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: male gametophyte, guard cell, root, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3 subunit 2, putative / eIF-3 beta, putative / eIF3i, putative (TAIR:AT2G46290.1); Has 32956 Blast hits to 15285 proteins in 499 species: Archae - 50; Bacteria - 4888; Metazoa - 14439; Fungi - 6714; Plants - 2478; Viruses - 0; Other Eukaryotes - 4387 (source: NCBI BLink).  protein_id AT2G46280.3p  transcript_id AT2G46280.3  protein_id AT2G46280.3p  transcript_id AT2G46280.3  
At2g46280	chr2:019005210	0.0	C/19005210-19005393,19004846-19005061,19004617-19004750,19004400-19004519,19004200-19004289,19004020-19004106,19003840-19003919,19003656-19003731	AT2G46280.1  CDS  gene_syn T3F17.7, TGF-BETA RECEPTOR INTERACTING PROTEIN 1, TIF3I1, TRIP-1  gene TRIP-1  function Encodes a homolog of mammalian TGF-beta receptor interacting protein. Co-immunoprecipitates with BRI1 and can be phosphorylated in vitro by BRI1 at specific sites (Thr-14, Thr-89, and either Thr-197 or Ser-198). May therefore be a cytoplasmic BRI1 substrate and involved in brassinosteroid regulated plant growth and development.The encoded protein has two DWD motifs. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|IPI  go_function nucleotide binding|GO:0000166||ISS  go_function protein binding|GO:0005515|15998311|IPI  go_function protein binding|GO:0005515|18223036|IPI  product TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1); nucleotide binding / protein binding  note TGF-BETA RECEPTOR INTERACTING PROTEIN 1 (TRIP-1); FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: response to cadmium ion, response to salt stress; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: male gametophyte, guard cell, root, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3 subunit 2, putative / eIF-3 beta, putative / eIF3i, putative (TAIR:AT2G46290.1); Has 36572 Blast hits to 16570 proteins in 520 species: Archae - 58; Bacteria - 5014; Metazoa - 16415; Fungi - 7279; Plants - 2915; Viruses - 0; Other Eukaryotes - 4891 (source: NCBI BLink).  protein_id AT2G46280.1p  transcript_id AT2G46280.1  protein_id AT2G46280.1p  transcript_id AT2G46280.1  
At2g46280	chr2:019005210	0.0	C/19005210-19005393,19004846-19005061,19004617-19004750,19004400-19004519,19004200-19004289,19004020-19004106,19003840-19003919,19003656-19003731	AT2G46280.2  CDS  gene_syn T3F17.7, TGF-BETA RECEPTOR INTERACTING PROTEIN 1, TIF3I1, TRIP-1  gene TRIP-1  function Encodes a homolog of mammalian TGF-beta receptor interacting protein. Co-immunoprecipitates with BRI1 and can be phosphorylated in vitro by BRI1 at specific sites (Thr-14, Thr-89, and either Thr-197 or Ser-198). May therefore be a cytoplasmic BRI1 substrate and involved in brassinosteroid regulated plant growth and development.The encoded protein has two DWD motifs. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|IPI  go_function nucleotide binding|GO:0000166||ISS  go_function protein binding|GO:0005515|15998311|IPI  go_function protein binding|GO:0005515|18223036|IPI  product TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1); nucleotide binding / protein binding  note TGF-BETA RECEPTOR INTERACTING PROTEIN 1 (TRIP-1); FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: response to cadmium ion, response to salt stress; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: male gametophyte, guard cell, root, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3 subunit 2, putative / eIF-3 beta, putative / eIF3i, putative (TAIR:AT2G46290.1); Has 36572 Blast hits to 16570 proteins in 520 species: Archae - 58; Bacteria - 5014; Metazoa - 16415; Fungi - 7279; Plants - 2915; Viruses - 0; Other Eukaryotes - 4891 (source: NCBI BLink).  protein_id AT2G46280.2p  transcript_id AT2G46280.2  protein_id AT2G46280.2p  transcript_id AT2G46280.2  
At2g46290	chr2:019007753	0.0	C/19007753-19007797,19007430-19007649,19007079-19007294,19006849-19006982,19006629-19006748,19006437-19006526,19006255-19006341,19006088-19006167,19005910-19005985	AT2G46290.1  CDS  gene_syn T3F17.6  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function nucleotide binding|GO:0000166||ISS  product eukaryotic translation initiation factor 3 subunit 2, putative / eIF-3 beta, putative / eIF3i, putative  note eukaryotic translation initiation factor 3 subunit 2, putative / eIF-3 beta, putative / eIF3i, putative; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: guard cell, root; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1); nucleotide binding / protein binding (TAIR:AT2G46280.2); Has 38644 Blast hits to 17631 proteins in 532 species: Archae - 40; Bacteria - 5141; Metazoa - 17732; Fungi - 7550; Plants - 3044; Viruses - 0; Other Eukaryotes - 5137 (source: NCBI BLink).  protein_id AT2G46290.1p  transcript_id AT2G46290.1  protein_id AT2G46290.1p  transcript_id AT2G46290.1  
At2g46300	chr2:019008392	0.0	W/19008392-19009134,19009232-19009247	AT2G46300.1  CDS  gene_syn T3F17.5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, sepal, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G01453.1); Has 340 Blast hits to 339 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 337; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G46300.1p  transcript_id AT2G46300.1  protein_id AT2G46300.1p  transcript_id AT2G46300.1  
At2g46308	chr2:019011167	0.0	C/19011167-19011355	AT2G46308.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G46308.1p  transcript_id AT2G46308.1  protein_id AT2G46308.1p  transcript_id AT2G46308.1  
At2g46310	chr2:019011614	0.0	W/19011614-19012498	AT2G46310.1  CDS  gene_syn CRF5, CYTOKININ RESPONSE FACTOR 5, T3F17.4  gene CRF5  function CRF5 encodes one of the six cytokinin response factors. It is transcriptionally upregulated in response to cytokinin. CRF5 belongs to the AP2/ERF superfamily of the transcriptional factors. CRF proteins rapidly relocalize to the nucleus in response to cytokinin. Analysis of loos-of-function mutants revealed that the CRFs function redundantly to regulate the development of embryos, cotyledons and leaves.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process embryonic development ending in seed dormancy|GO:0009793|16832061|IGI  go_process transcription factor import into nucleus|GO:0042991|16832061|IDA  go_process leaf development|GO:0048366|16832061|IMP  go_process cotyledon development|GO:0048825|16832061|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product CRF5 (CYTOKININ RESPONSE FACTOR 5); DNA binding / transcription factor  note CYTOKININ RESPONSE FACTOR 5 (CRF5); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: embryonic development ending in seed dormancy, cotyledon development, regulation of transcription, DNA-dependent, leaf development, transcription factor import into nucleus; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: CRF6 (CYTOKININ RESPONSE FACTOR 6); DNA binding / transcription factor (TAIR:AT3G61630.1); Has 3655 Blast hits to 3624 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3643; Viruses - 2; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT2G46310.1p  transcript_id AT2G46310.1  protein_id AT2G46310.1p  transcript_id AT2G46310.1  
At2g46320	chr2:019015998	0.0	W/19015998-19016135,19016227-19016304,19016392-19016514,19016783-19016842,19016940-19017110,19017206-19017382,19017474-19017623,19017759-19017817,19017891-19018020	AT2G46320.1  CDS  gene_syn T3F17.3  go_component mitochondrial inner membrane|GO:0005743||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function binding|GO:0005488||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: binding, transporter activity; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: mitochondrial substrate carrier family protein (TAIR:AT4G27940.1); Has 12834 Blast hits to 8572 proteins in 317 species: Archae - 0; Bacteria - 0; Metazoa - 6467; Fungi - 3384; Plants - 1968; Viruses - 0; Other Eukaryotes - 1015 (source: NCBI BLink).  protein_id AT2G46320.1p  transcript_id AT2G46320.1  protein_id AT2G46320.1p  transcript_id AT2G46320.1  
At2g46320	chr2:019016489	0.0	W/19016489-19016514,19016767-19016842,19016940-19017110,19017206-19017382,19017474-19017623,19017759-19017817,19017891-19018020	AT2G46320.2  CDS  gene_syn T3F17.3  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function binding|GO:0005488||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: mitochondrial substrate carrier family protein (TAIR:AT4G27940.1); Has 10520 Blast hits to 7282 proteins in 303 species: Archae - 0; Bacteria - 0; Metazoa - 5432; Fungi - 2787; Plants - 1532; Viruses - 0; Other Eukaryotes - 769 (source: NCBI BLink).  protein_id AT2G46320.2p  transcript_id AT2G46320.2  protein_id AT2G46320.2p  transcript_id AT2G46320.2  
At2g46320	chr2:019016489	0.0	W/19016489-19016514,19016767-19016842,19016940-19017110,19017206-19017382,19017474-19017623,19017759-19017817,19017891-19018020	AT2G46320.3  CDS  gene_syn T3F17.3  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function binding|GO:0005488||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: mitochondrial substrate carrier family protein (TAIR:AT4G27940.1); Has 10520 Blast hits to 7282 proteins in 303 species: Archae - 0; Bacteria - 0; Metazoa - 5432; Fungi - 2787; Plants - 1532; Viruses - 0; Other Eukaryotes - 769 (source: NCBI BLink).  protein_id AT2G46320.3p  transcript_id AT2G46320.3  protein_id AT2G46320.3p  transcript_id AT2G46320.3  
At2g46330	chr2:019018935	0.0	C/19018935-19019108	AT2G46330.2  CDS  gene_syn AGP16, ARABINOGALACTAN PROTEIN 16, ATAGP16, F11C10.2  gene AGP16  function Encodes arabinogalactan protein (AGP16).  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  product AGP16 (ARABINOGALACTAN PROTEIN 16)  note ARABINOGALACTAN PROTEIN 16 (AGP16); LOCATED IN: anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1070 (InterPro:IPR009424); BEST Arabidopsis thaliana protein match is: AGP20 (TAIR:AT3G61640.1); Has 13 Blast hits to 13 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G46330.2p  transcript_id AT2G46330.2  protein_id AT2G46330.2p  transcript_id AT2G46330.2  
At2g46330	chr2:019018994	0.0	C/19018994-19019108,19018730-19018836	AT2G46330.1  CDS  gene_syn AGP16, ARABINOGALACTAN PROTEIN 16, ATAGP16, F11C10.2  gene AGP16  function Encodes arabinogalactan protein (AGP16).  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  product AGP16 (ARABINOGALACTAN PROTEIN 16)  note ARABINOGALACTAN PROTEIN 16 (AGP16); LOCATED IN: anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1070 (InterPro:IPR009424); BEST Arabidopsis thaliana protein match is: AGP20 (TAIR:AT3G61640.1); Has 61 Blast hits to 61 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G46330.1p  transcript_id AT2G46330.1  protein_id AT2G46330.1p  transcript_id AT2G46330.1  
At2g46340	chr2:019025418	0.0	C/19025418-19026821,19024959-19025116,19023896-19024706,19023547-19023693,19023071-19023388,19022924-19022983,19022572-19022763	AT2G46340.1  CDS  gene_syn AT2G46350, F11C10.3, SPA1, SUPPRESSOR OF PHYA-105 1  gene SPA1  function Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA1 is a PHYA signaling intermediate, putative regulator of PHYA signaling pathway. Light responsive repressor of photomorphogenesis. Involved in regulating circadian rhythms and flowering time in plants. Under constant light, the abundance of SPA1 protein exhibited circadian regulation, whereas under constant darkness, SPA1 protein levels remained unchanged. In addition, the spa1-3 mutation slightly shortened circadian period of CCA1, TOC1/PRR1 and SPA1 transcript accumulation under constant light.  go_component nucleus|GO:0005634|10205059|IDA  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process red, far-red light phototransduction|GO:0009585|9477570|IGI  go_process photomorphogenesis|GO:0009640|10205059|IMP  go_process red or far red light signaling pathway|GO:0010017|16891401|IMP  go_process negative regulation of photomorphogenesis|GO:0010100|16813572|IMP  go_process response to red light|GO:0010114|17076805|IEP  go_process response to far red light|GO:0010218|17076805|IEP  go_process photoperiodism, flowering|GO:0048573|16854975|IMP  go_process short-day photoperiodism, flowering|GO:0048575|16709190|IMP  go_function signal transducer activity|GO:0004871||ISS  go_function protein binding|GO:0005515|15960622|IPI  go_function protein binding|GO:0005515|16854975|IPI  product SPA1 (SUPPRESSOR OF PHYA-105 1); protein binding / signal transducer  note SUPPRESSOR OF PHYA-105 1 (SPA1); FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: in 8 processes; LOCATED IN: nucleus, CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Protein kinase, core (InterPro:IPR000719), WD40 repeat, region (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: SPA2 (SPA1-RELATED 2); protein binding / signal transducer (TAIR:AT4G11110.1); Has 23587 Blast hits to 14741 proteins in 515 species: Archae - 30; Bacteria - 3351; Metazoa - 10742; Fungi - 4390; Plants - 1850; Viruses - 2; Other Eukaryotes - 3222 (source: NCBI BLink).  protein_id AT2G46340.1p  transcript_id AT2G46340.1  protein_id AT2G46340.1p  transcript_id AT2G46340.1  
At2g46360	chr2:019028507	0.0	W/19028507-19028800	AT2G46360.1  CDS  gene_syn F11C10.5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G46360.1p  transcript_id AT2G46360.1  protein_id AT2G46360.1p  transcript_id AT2G46360.1  
At2g46370	chr2:019034342	0.0	W/19034342-19034640,19034708-19034809,19034956-19035743,19035831-19036369	AT2G46370.1  CDS  gene_syn F11C10.6, FAR-RED INSENSITIVE 219, FIN219, JAR1, JASMONATE RESISTANT 1  gene JAR1  function Encodes a jasmonate-amido synthetase that is a member of the GH3 family of proteins. JAR1 catalyzes the formation of a biologically active jasmonyl-isoleucine (JA-Ile) conjugate. JA-Ile promotes the interaction between JAZ1 and COI1 in the jasmonate signaling pathway. JAR1 localizes to the cytoplasm and is also a phytochrome A signaling component. JAR1 is an auxin-induced gene. Loss of function mutants are defective in a variety of responses to jasmonic acid. JAR1 has additional enzymatic activities in vitro, (e.g. the ability to synthesize adenosine 5 -tetraphosphate and other JA conjugates), but there are no data to show whether JAR1 catalyzes many of these reactions in vivo. JAR1 is involved in pathogen defense, sensitivity to ozone, and wound responses.  go_component vacuole|GO:0005773|14760709|IDA  go_component cytoplasm|GO:0005737|10921909|IDA  go_process oxygen and reactive oxygen species metabolic process|GO:0006800|15064385|IMP  go_process red, far-red light phototransduction|GO:0009585|10921909|IMP  go_process response to wounding|GO:0009611|18247047|IEP  go_process systemic acquired resistance|GO:0009627|17419843|IEP  go_process photomorphogenesis|GO:0009640|10921909|IMP  go_process jasmonic acid metabolic process|GO:0009694|15258265|IMP  go_process response to auxin stimulus|GO:0009733||ISS  go_process response to jasmonic acid stimulus|GO:0009753|15064385|IMP  go_process response to jasmonic acid stimulus|GO:0009753||IMP  go_process jasmonic acid and ethylene-dependent systemic resistance|GO:0009861|11090217|IGI  go_process induced systemic resistance, jasmonic acid mediated signaling pathway|GO:0009864|9724702|IMP  go_process regulation of stomatal movement|GO:0010119|15064385|IMP  go_process response to ozone|GO:0010193||IMP  go_process negative regulation of defense response|GO:0031348|16732289|IMP  go_function catalytic activity|GO:0003824|12084835|IDA  go_function ATP binding|GO:0005524|12084835|ISS  go_function adenylyltransferase activity|GO:0070566|17291501|IDA  go_function jasmonate-amino synthetase activity|GO:0080123|15258265|IDA  product JAR1 (JASMONATE RESISTANT 1); ATP binding / adenylyltransferase/ catalytic/ jasmonate-amino synthetase  note JASMONATE RESISTANT 1 (JAR1); FUNCTIONS IN: adenylyltransferase activity, catalytic activity, jasmonate-amino synthetase activity, ATP binding; INVOLVED IN: in 13 processes; LOCATED IN: vacuole, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: DFL2 (DWARF IN LIGHT 2) (TAIR:AT4G03400.1); Has 761 Blast hits to 735 proteins in 115 species: Archae - 0; Bacteria - 237; Metazoa - 49; Fungi - 2; Plants - 220; Viruses - 0; Other Eukaryotes - 253 (source: NCBI BLink).  protein_id AT2G46370.1p  transcript_id AT2G46370.1  protein_id AT2G46370.1p  transcript_id AT2G46370.1  
At2g46370	chr2:019034342	0.0	W/19034342-19034640,19034708-19034809,19034956-19035743,19035831-19036369	AT2G46370.2  CDS  gene_syn F11C10.6, FAR-RED INSENSITIVE 219, FIN219, JAR1, JASMONATE RESISTANT 1  gene JAR1  function Encodes a jasmonate-amido synthetase that is a member of the GH3 family of proteins. JAR1 catalyzes the formation of a biologically active jasmonyl-isoleucine (JA-Ile) conjugate. JA-Ile promotes the interaction between JAZ1 and COI1 in the jasmonate signaling pathway. JAR1 localizes to the cytoplasm and is also a phytochrome A signaling component. JAR1 is an auxin-induced gene. Loss of function mutants are defective in a variety of responses to jasmonic acid. JAR1 has additional enzymatic activities in vitro, (e.g. the ability to synthesize adenosine 5 -tetraphosphate and other JA conjugates), but there are no data to show whether JAR1 catalyzes many of these reactions in vivo. JAR1 is involved in pathogen defense, sensitivity to ozone, and wound responses.  go_component vacuole|GO:0005773|14760709|IDA  go_component cytoplasm|GO:0005737|10921909|IDA  go_process oxygen and reactive oxygen species metabolic process|GO:0006800|15064385|IMP  go_process red, far-red light phototransduction|GO:0009585|10921909|IMP  go_process response to wounding|GO:0009611|18247047|IEP  go_process systemic acquired resistance|GO:0009627|17419843|IEP  go_process photomorphogenesis|GO:0009640|10921909|IMP  go_process jasmonic acid metabolic process|GO:0009694|15258265|IMP  go_process response to auxin stimulus|GO:0009733||ISS  go_process response to jasmonic acid stimulus|GO:0009753|15064385|IMP  go_process response to jasmonic acid stimulus|GO:0009753||IMP  go_process jasmonic acid and ethylene-dependent systemic resistance|GO:0009861|11090217|IGI  go_process induced systemic resistance, jasmonic acid mediated signaling pathway|GO:0009864|9724702|IMP  go_process regulation of stomatal movement|GO:0010119|15064385|IMP  go_process response to ozone|GO:0010193||IMP  go_process negative regulation of defense response|GO:0031348|16732289|IMP  go_function catalytic activity|GO:0003824|12084835|IDA  go_function ATP binding|GO:0005524|12084835|ISS  go_function adenylyltransferase activity|GO:0070566|17291501|IDA  go_function jasmonate-amino synthetase activity|GO:0080123|15258265|IDA  product JAR1 (JASMONATE RESISTANT 1); ATP binding / adenylyltransferase/ catalytic/ jasmonate-amino synthetase  note JASMONATE RESISTANT 1 (JAR1); FUNCTIONS IN: adenylyltransferase activity, catalytic activity, jasmonate-amino synthetase activity, ATP binding; INVOLVED IN: in 13 processes; LOCATED IN: vacuole, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: DFL2 (DWARF IN LIGHT 2) (TAIR:AT4G03400.1); Has 761 Blast hits to 735 proteins in 115 species: Archae - 0; Bacteria - 237; Metazoa - 49; Fungi - 2; Plants - 220; Viruses - 0; Other Eukaryotes - 253 (source: NCBI BLink).  protein_id AT2G46370.2p  transcript_id AT2G46370.2  protein_id AT2G46370.2p  transcript_id AT2G46370.2  
At2g46370	chr2:019034579	0.0	W/19034579-19034640,19034708-19034809,19034956-19035743,19035831-19036369	AT2G46370.3  CDS  gene_syn F11C10.6, FAR-RED INSENSITIVE 219, FIN219, JAR1, JASMONATE RESISTANT 1  gene JAR1  function Encodes a jasmonate-amido synthetase that is a member of the GH3 family of proteins. JAR1 catalyzes the formation of a biologically active jasmonyl-isoleucine (JA-Ile) conjugate. JA-Ile promotes the interaction between JAZ1 and COI1 in the jasmonate signaling pathway. JAR1 localizes to the cytoplasm and is also a phytochrome A signaling component. JAR1 is an auxin-induced gene. Loss of function mutants are defective in a variety of responses to jasmonic acid. JAR1 has additional enzymatic activities in vitro, (e.g. the ability to synthesize adenosine 5 -tetraphosphate and other JA conjugates), but there are no data to show whether JAR1 catalyzes many of these reactions in vivo. JAR1 is involved in pathogen defense, sensitivity to ozone, and wound responses.  go_component cytoplasm|GO:0005737|10921909|IDA  go_process oxygen and reactive oxygen species metabolic process|GO:0006800|15064385|IMP  go_process red, far-red light phototransduction|GO:0009585|10921909|IMP  go_process response to wounding|GO:0009611|18247047|IEP  go_process systemic acquired resistance|GO:0009627|17419843|IEP  go_process photomorphogenesis|GO:0009640|10921909|IMP  go_process jasmonic acid metabolic process|GO:0009694|15258265|IMP  go_process response to auxin stimulus|GO:0009733||ISS  go_process response to jasmonic acid stimulus|GO:0009753|15064385|IMP  go_process response to jasmonic acid stimulus|GO:0009753||IMP  go_process jasmonic acid and ethylene-dependent systemic resistance|GO:0009861|11090217|IGI  go_process induced systemic resistance, jasmonic acid mediated signaling pathway|GO:0009864|9724702|IMP  go_process regulation of stomatal movement|GO:0010119|15064385|IMP  go_process response to ozone|GO:0010193||IMP  go_process negative regulation of defense response|GO:0031348|16732289|IMP  go_function catalytic activity|GO:0003824|12084835|IDA  go_function ATP binding|GO:0005524|12084835|ISS  go_function adenylyltransferase activity|GO:0070566|17291501|IDA  go_function jasmonate-amino synthetase activity|GO:0080123|15258265|IDA  product JAR1 (JASMONATE RESISTANT 1); ATP binding / adenylyltransferase/ catalytic/ jasmonate-amino synthetase  note JASMONATE RESISTANT 1 (JAR1); FUNCTIONS IN: adenylyltransferase activity, catalytic activity, jasmonate-amino synthetase activity, ATP binding; INVOLVED IN: in 13 processes; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: DFL2 (DWARF IN LIGHT 2) (TAIR:AT4G03400.1); Has 697 Blast hits to 695 proteins in 114 species: Archae - 0; Bacteria - 211; Metazoa - 49; Fungi - 2; Plants - 217; Viruses - 0; Other Eukaryotes - 218 (source: NCBI BLink).  protein_id AT2G46370.3p  transcript_id AT2G46370.3  protein_id AT2G46370.3p  transcript_id AT2G46370.3  
At2g46375	chr2:019037958	0.0	W/19037958-19038329	AT2G46375.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61660.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G46375.1p  transcript_id AT2G46375.1  protein_id AT2G46375.1p  transcript_id AT2G46375.1  
At2g46380	chr2:019039377	0.0	W/19039377-19039497,19039711-19041556,19041640-19041700,19041799-19042022,19042117-19042171	AT2G46380.1  CDS  gene_syn F11C10.7  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61670.1); Has 162 Blast hits to 124 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 152; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT2G46380.1p  transcript_id AT2G46380.1  protein_id AT2G46380.1p  transcript_id AT2G46380.1  
At2g46390	chr2:019042923	0.0	C/19042923-19043018,19042466-19042510	AT2G46390.1  CDS  gene_syn F11C10.8  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G46390.1p  transcript_id AT2G46390.1  protein_id AT2G46390.1p  transcript_id AT2G46390.1  
At2g46400	chr2:019044516	0.0	C/19044516-19044754,19044287-19044418,19043676-19044192	AT2G46400.1  CDS  gene_syn AtWRKY46, F11C10.9, WRKY46  gene WRKY46  function member of WRKY Transcription Factor; Group III  go_component nucleolus|GO:0005730|15610358|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_process response to chitin|GO:0010200|17722694|IEP  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY46; transcription factor  note WRKY46; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to chitin, regulation of transcription, DNA-dependent; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY53; DNA binding / protein binding / transcription activator/ transcription factor (TAIR:AT4G23810.1); Has 1926 Blast hits to 1656 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1914; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT2G46400.1p  transcript_id AT2G46400.1  protein_id AT2G46400.1p  transcript_id AT2G46400.1  
At2g46410	chr2:019050107	0.0	C/19050107-19050185,19049946-19050033,19049315-19049432	AT2G46410.1  CDS  gene_syn CAPRICE, CPC, F11C10.10, MYB FAMILY TRANSCRIPTION FACTOR CPC  gene CPC  function Nuclear-localized R3-type MYB transcription factor. Positive regulator of hair-cell differentiation. Preferentially transcribed in hairless cells. Moves from atrichoblasts into trichoblast via plasmodesmata in a tissue-specific mode. N-terminus and part of the Myb domain are required for this movement, with W76 playing a crucial role. Capability to increase the size-exclusion limit of plasmodesmata. Regulated by WEREWOLF.  go_component nucleus|GO:0005634|16291794|IDA  go_component nucleus|GO:0005634|16581911|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process epidermal cell differentiation|GO:0009913|12403712|IMP  go_process positive regulation of trichoblast fate specification|GO:0010063|11326047|IMP  go_process cell differentiation|GO:0030154|9262483|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9262483|ISS  go_function transcription factor activity|GO:0003700||ISS  product CPC (CAPRICE); DNA binding / transcription factor  note CAPRICE (CPC); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: TRY (TRIPTYCHON); DNA binding / transcription factor (TAIR:AT5G53200.1); Has 1606 Blast hits to 1606 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1594; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT2G46410.1p  transcript_id AT2G46410.1  protein_id AT2G46410.1p  transcript_id AT2G46410.1  
At2g46420	chr2:019054891	0.0	W/19054891-19054905,19055128-19055274,19055368-19055473,19055559-19055744,19055841-19056006,19056101-19056417,19056545-19056634,19056766-19056830	AT2G46420.1  CDS  gene_syn F11C10.11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61700.1); Has 144 Blast hits to 144 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 123; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT2G46420.1p  transcript_id AT2G46420.1  protein_id AT2G46420.1p  transcript_id AT2G46420.1  
At2g46420	chr2:019054891	0.0	W/19054891-19054905,19055128-19055274,19055368-19055473,19055559-19055744,19055841-19056006,19056101-19056417,19056545-19056645	AT2G46420.2  CDS  gene_syn F11C10.11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61700.1); Has 146 Blast hits to 146 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT2G46420.2p  transcript_id AT2G46420.2  protein_id AT2G46420.2p  transcript_id AT2G46420.2  
At2g46430	chr2:019058472	0.0	W/19058472-19058503,19058580-19059111,19059198-19059410,19059506-19059801,19059887-19059998,19060080-19060316,19060376-19060764,19060964-19061273	AT2G46430.1  CDS  gene_syn ATCNGC3, CNGC3, CNGC3.C, CYCLIC NUCLEOTIDE GATED CHANNEL 3, F11C10.12  gene ATCNGC3  function cyclic nucleotide gated channel (CNGC4), downstream component of the signaling pathways leading to HR/resistance  go_component membrane|GO:0016020||IEA  go_process ion transport|GO:0006811||IEA  go_function ion channel activity|GO:0005216||ISS  go_function calmodulin binding|GO:0005516|11782485|TAS  go_function cyclic nucleotide binding|GO:0030551||ISS  product ATCNGC3 (CYCLIC NUCLEOTIDE GATED CHANNEL 3); calmodulin binding / cyclic nucleotide binding / ion channel  note CYCLIC NUCLEOTIDE GATED CHANNEL 3 (ATCNGC3); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding, conserved site (InterPro:IPR018488), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: ATCNGC13; calmodulin binding / cyclic nucleotide binding / ion channel (TAIR:AT4G01010.1); Has 2500 Blast hits to 2413 proteins in 192 species: Archae - 0; Bacteria - 18; Metazoa - 1242; Fungi - 2; Plants - 628; Viruses - 0; Other Eukaryotes - 610 (source: NCBI BLink).  protein_id AT2G46430.1p  transcript_id AT2G46430.1  protein_id AT2G46430.1p  transcript_id AT2G46430.1  
At2g46430	chr2:019058472	0.0	W/19058472-19058503,19058580-19059111,19059198-19059410,19059506-19059801,19059887-19059998,19060080-19060316,19060376-19060764,19060964-19061273	AT2G46430.2  CDS  gene_syn ATCNGC3, CNGC3, CNGC3.C, CYCLIC NUCLEOTIDE GATED CHANNEL 3, F11C10.12  gene ATCNGC3  function cyclic nucleotide gated channel (CNGC4), downstream component of the signaling pathways leading to HR/resistance  go_component membrane|GO:0016020||IEA  go_process ion transport|GO:0006811||IEA  go_function ion channel activity|GO:0005216||ISS  go_function calmodulin binding|GO:0005516|11782485|TAS  go_function cyclic nucleotide binding|GO:0030551||ISS  product ATCNGC3 (CYCLIC NUCLEOTIDE GATED CHANNEL 3); calmodulin binding / cyclic nucleotide binding / ion channel  note CYCLIC NUCLEOTIDE GATED CHANNEL 3 (ATCNGC3); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding, conserved site (InterPro:IPR018488), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: ATCNGC13; calmodulin binding / cyclic nucleotide binding / ion channel (TAIR:AT4G01010.1); Has 2500 Blast hits to 2413 proteins in 192 species: Archae - 0; Bacteria - 18; Metazoa - 1242; Fungi - 2; Plants - 628; Viruses - 0; Other Eukaryotes - 610 (source: NCBI BLink).  protein_id AT2G46430.2p  transcript_id AT2G46430.2  protein_id AT2G46430.2p  transcript_id AT2G46430.2  
At2g46440	chr2:019062082	0.0	W/19062082-19062110,19062209-19062614,19062694-19062897,19062990-19063297,19063375-19063486,19063565-19063801,19063872-19064260,19064448-19064628	AT2G46440.1  CDS  gene_syn ATCNGC11, CNGC11, CYCLIC NUCLEOTIDE-GATED CHANNEL 11, CYCLIC NUCLEOTIDE-GATED CHANNELS, F11C10.13  gene ATCNGC11  function Member of Cyclic nucleotide gated channel family. Positive regulator of resistance against avirulent fungal pathogen.  go_component membrane|GO:0016020||IEA  go_process response to fungus|GO:0009620|16461580|IMP  go_function ion channel activity|GO:0005216||ISS  go_function cation channel activity|GO:0005261|16461580|IGI  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function cyclic nucleotide binding|GO:0030551||ISS  product ATCNGC11 (CYCLIC NUCLEOTIDE-GATED CHANNELS); calmodulin binding / cation channel/ cyclic nucleotide binding / ion channel  note CYCLIC NUCLEOTIDE-GATED CHANNELS (ATCNGC11); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding, cation channel activity; INVOLVED IN: response to fungus; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding, conserved site (InterPro:IPR018488), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: ATCNGC12; cation channel/ cyclic nucleotide binding / ion channel (TAIR:AT2G46450.1); Has 2275 Blast hits to 2237 proteins in 190 species: Archae - 0; Bacteria - 18; Metazoa - 1219; Fungi - 0; Plants - 614; Viruses - 0; Other Eukaryotes - 424 (source: NCBI BLink).  protein_id AT2G46440.1p  transcript_id AT2G46440.1  protein_id AT2G46440.1p  transcript_id AT2G46440.1  
At2g46450	chr2:019065845	0.0	W/19065845-19065873,19065943-19066348,19066428-19066631,19066704-19067011,19067113-19067224,19067303-19067539,19067623-19067999,19068088-19068364	AT2G46450.1  CDS  gene_syn ATCNGC12, CNGC12, CYCLIC NUCLEOTIDE-GATED CHANNEL 12, F11C10.14  gene ATCNGC12  function Member of Cyclic nucleotide gated channel family.Positive regulator of resistance against avirulent fungal pathogen.Suppresses the phenotype conferred by cpr22 in a dosage-dependent manner.  go_component plasma membrane|GO:0005886|18643993|IDA  go_process response to fungus|GO:0009620|16461580|IMP  go_function ion channel activity|GO:0005216||ISS  go_function cation channel activity|GO:0005261|16461580|IGI  go_function cation channel activity|GO:0005261|18643993|IMP  go_function cyclic nucleotide binding|GO:0030551||ISS  product ATCNGC12; cation channel/ cyclic nucleotide binding / ion channel  note ATCNGC12; FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, cation channel activity; INVOLVED IN: response to fungus; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Ion transport (InterPro:IPR005821), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: ATCNGC11 (CYCLIC NUCLEOTIDE-GATED CHANNELS); calmodulin binding / cation channel/ cyclic nucleotide binding / ion channel (TAIR:AT2G46440.1); Has 2017 Blast hits to 1994 proteins in 184 species: Archae - 0; Bacteria - 10; Metazoa - 1158; Fungi - 0; Plants - 603; Viruses - 0; Other Eukaryotes - 246 (source: NCBI BLink).  protein_id AT2G46450.1p  transcript_id AT2G46450.1  protein_id AT2G46450.1p  transcript_id AT2G46450.1  
At2g46455	chr2:019070409	0.0	C/19070409-19070833,19070217-19070307,19069844-19069888	AT2G46455.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_component integral to membrane|GO:0016021||IEA  go_process protein insertion into membrane|GO:0051205||IEA  product unknown protein  note INVOLVED IN: protein insertion into membrane; LOCATED IN: mitochondrion, integral to membrane; CONTAINS InterPro DOMAIN/s: 60 kDa inner membrane insertion protein (InterPro:IPR001708); BEST Arabidopsis thaliana protein match is: OXA1L (INNER MEMBRANE PROTEIN OXA1-LIKE) (TAIR:AT2G46470.1); Has 21 Blast hits to 21 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G46455.1p  transcript_id AT2G46455.1  protein_id AT2G46455.1p  transcript_id AT2G46455.1  
At2g46460	chr2:019071537	0.0	W/19071537-19072019	AT2G46460.1  CDS  gene_syn F11C10.15  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT1G47497.1); Has 144 Blast hits to 144 proteins in 12 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G46460.1p  transcript_id AT2G46460.1  protein_id AT2G46460.1p  transcript_id AT2G46460.1  
At2g46470	chr2:019072659	0.0	W/19072659-19073122,19073216-19073306,19073400-19073447,19073750-19073808,19073920-19073995,19074079-19074210,19074319-19074426,19074532-19074586,19074686-19074948	AT2G46470.1  CDS  gene_syn F11C10.16, INNER MEMBRANE PROTEIN OXA1-LIKE, OXA1L  gene OXA1L  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|11148275|TAS  go_process protein import into mitochondrial inner membrane|GO:0045039|10636840|TAS  go_function molecular_function|GO:0003674||ND  product OXA1L (INNER MEMBRANE PROTEIN OXA1-LIKE)  note INNER MEMBRANE PROTEIN OXA1-LIKE (OXA1L); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein import into mitochondrial inner membrane; LOCATED IN: mitochondrion, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 60 kDa inner membrane insertion protein (InterPro:IPR001708); BEST Arabidopsis thaliana protein match is: OXA1; P-P-bond-hydrolysis-driven protein transmembrane transporter (TAIR:AT5G62050.1); Has 4383 Blast hits to 4383 proteins in 1328 species: Archae - 0; Bacteria - 2560; Metazoa - 212; Fungi - 138; Plants - 111; Viruses - 0; Other Eukaryotes - 1362 (source: NCBI BLink).  protein_id AT2G46470.1p  transcript_id AT2G46470.1  protein_id AT2G46470.1p  transcript_id AT2G46470.1  
At2g46480	chr2:019078273	0.0	C/19078273-19078386,19077860-19078185,19077431-19077788,19076952-19077354,19076767-19076876,19076405-19076680	AT2G46480.1  CDS  gene_syn GALACTURONOSYLTRANSFERASE 2, GAUT2, LGT2  gene GAUT2  function Encodes a protein with putative galacturonosyltransferase activity.  go_component cellular_component|GO:0005575||ND  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS  product GAUT2; polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups  note GAUT2; FUNCTIONS IN: polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: GAUT1 (GALACTURONOSYLTRANSFERASE 1); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT3G61130.1); Has 786 Blast hits to 778 proteins in 106 species: Archae - 0; Bacteria - 217; Metazoa - 126; Fungi - 0; Plants - 429; Viruses - 2; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT2G46480.1p  transcript_id AT2G46480.1  protein_id AT2G46480.1p  transcript_id AT2G46480.1  
At2g46490	chr2:019079457	0.0	W/19079457-19079861	AT2G46490.1  CDS  gene_syn F11C10.31  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35110.1); Has 10 Blast hits to 10 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G46490.1p  transcript_id AT2G46490.1  protein_id AT2G46490.1p  transcript_id AT2G46490.1  
At2g46495	chr2:019085011	0.0	C/19085011-19085704,19084252-19084558,19083130-19083707,19082352-19082750,19081083-19081394,19080254-19080600	AT2G46495.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G28040.1); Has 10778 Blast hits to 5754 proteins in 219 species: Archae - 0; Bacteria - 0; Metazoa - 3400; Fungi - 631; Plants - 5227; Viruses - 55; Other Eukaryotes - 1465 (source: NCBI BLink).  protein_id AT2G46495.1p  transcript_id AT2G46495.1  protein_id AT2G46495.1p  transcript_id AT2G46495.1  
At2g46500	chr2:019087215	0.0	C/19087215-19088534,19086741-19087121	AT2G46500.1  CDS  gene_syn F11C10.19, F11C10_19  go_process protein modification process|GO:0006464||IEA  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_component cellular_component|GO:0005575||ND  go_function inositol or phosphatidylinositol kinase activity|GO:0004428||ISS  product phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein  note phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein; FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3- and 4-kinase, catalytic (InterPro:IPR000403), Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein (TAIR:AT5G24240.1); Has 9099 Blast hits to 3359 proteins in 560 species: Archae - 0; Bacteria - 10; Metazoa - 3779; Fungi - 1061; Plants - 2175; Viruses - 263; Other Eukaryotes - 1811 (source: NCBI BLink).  protein_id AT2G46500.1p  transcript_id AT2G46500.1  protein_id AT2G46500.1p  transcript_id AT2G46500.1  
At2g46500	chr2:019087215	0.0	C/19087215-19088534,19086741-19087121	AT2G46500.2  CDS  gene_syn F11C10.19, F11C10_19  go_process protein modification process|GO:0006464||IEA  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_component cellular_component|GO:0005575||ND  go_function inositol or phosphatidylinositol kinase activity|GO:0004428||ISS  product phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein  note phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein; FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3- and 4-kinase, catalytic (InterPro:IPR000403), Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein (TAIR:AT5G24240.1); Has 9099 Blast hits to 3359 proteins in 560 species: Archae - 0; Bacteria - 10; Metazoa - 3779; Fungi - 1061; Plants - 2175; Viruses - 263; Other Eukaryotes - 1811 (source: NCBI BLink).  protein_id AT2G46500.2p  transcript_id AT2G46500.2  protein_id AT2G46500.2p  transcript_id AT2G46500.2  
At2g46505	chr2:019090013	0.0	C/19090013-19090468	AT2G46505.1  CDS  gene_syn SDH4  gene SDH4  function Encodes succinate dehydrogenase ,a component of mitochondrial respiratory complex II. Nuclear encoded gene which is imported into the mitochondrion.  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|12374303|IDA  go_component mitochondrial respiratory chain complex II|GO:0005749|12374303|ISS  go_process tricarboxylic acid cycle|GO:0006099|12374303|TAS  go_function succinate dehydrogenase (ubiquinone) activity|GO:0008177|12374303|ISS  product SDH4; succinate dehydrogenase (ubiquinone)  note SDH4; FUNCTIONS IN: succinate dehydrogenase (ubiquinone) activity; INVOLVED IN: tricarboxylic acid cycle; LOCATED IN: mitochondrial respiratory chain complex II, mitochondrion, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 40 Blast hits to 40 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G46505.1p  transcript_id AT2G46505.1  protein_id AT2G46505.1p  transcript_id AT2G46505.1  
At2g46510	chr2:019091187	0.0	C/19091187-19092887	AT2G46510.1  CDS  gene_syn ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR, ATAIB, F11C10.32  gene ATAIB  function Encodes a nuclear localized BLH domain containing transcriptional activator involved in response to ABA. Overexpression confers enhanced ABA responsiveness while loss of function mutants are ABA sensitive.  go_component nucleus|GO:0005634|17828375|IDA  go_process response to wounding|GO:0009611|17675405|IEP  go_process response to abscisic acid stimulus|GO:0009737|17828375|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700|17828375|IDA  go_function transcription factor activity|GO:0003700||ISS  product ATAIB (ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR); DNA binding / transcription factor  note ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR (ATAIB); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to wounding, response to abscisic acid stimulus, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT1G01260.2); Has 2214 Blast hits to 2046 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 67; Fungi - 69; Plants - 2067; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT2G46510.1p  transcript_id AT2G46510.1  protein_id AT2G46510.1p  transcript_id AT2G46510.1  
At2g46520	chr2:019096867	0.0	W/19096867-19099785	AT2G46520.1  CDS  gene_syn F11C10.33  go_component membrane|GO:0016020|17432890|IDA  go_process protein import into nucleus, docking|GO:0000059||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process cell proliferation|GO:0008283||IEA  go_function binding|GO:0005488||IEA  go_function importin-alpha export receptor activity|GO:0008262||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component nucleus|GO:0005634||ISS  go_component nuclear pore|GO:0005643||ISS  go_component cytoplasm|GO:0005737||ISS  go_process protein import into nucleus, docking|GO:0000059||ISS  go_function protein transporter activity|GO:0008565||ISS  product cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative  note cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative; FUNCTIONS IN: protein transporter activity, importin-alpha export receptor activity, binding; INVOLVED IN: intracellular protein transport, cell proliferation, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), CAS/CSE, C-terminal (InterPro:IPR005043), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Exportin, Cse1-like (InterPro:IPR013713); BEST Arabidopsis thaliana protein match is: binding / protein transporter (TAIR:AT3G59020.2); Has 841 Blast hits to 834 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 412; Fungi - 251; Plants - 70; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT2G46520.1p  transcript_id AT2G46520.1  protein_id AT2G46520.1p  transcript_id AT2G46520.1  
At2g46530	chr2:019104993	0.0	W/19104993-19105026,19105209-19105324,19105405-19105560,19105639-19105791,19105891-19105975,19106048-19106138,19106221-19106385,19106467-19106580,19106681-19106753,19106846-19106984,19107156-19107511,19107613-19107800,19107894-19108029	AT2G46530.1  CDS  gene_syn ARF11, AUXIN RESPONSE FACTOR 11, F11C10.34  gene ARF11  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process response to hormone stimulus|GO:0009725||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product ARF11 (AUXIN RESPONSE FACTOR 11); transcription factor  note AUXIN RESPONSE FACTOR 11 (ARF11); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to hormone stimulus, regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: ARF18 (AUXIN RESPONSE FACTOR 18); transcription factor (TAIR:AT3G61830.1); Has 1522 Blast hits to 1299 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 6; Plants - 1503; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT2G46530.1p  transcript_id AT2G46530.1  protein_id AT2G46530.1p  transcript_id AT2G46530.1  
At2g46530	chr2:019105112	0.0	W/19105112-19105324,19105405-19105560,19105639-19105791,19105891-19105975,19106048-19106138,19106221-19106385,19106467-19106580,19106681-19106753,19106846-19106984,19107156-19107511,19107613-19107800,19107894-19108029	AT2G46530.3  CDS  gene_syn ARF11, AUXIN RESPONSE FACTOR 11, F11C10.34  gene ARF11  go_component nucleus|GO:0005634||IEA  go_component endomembrane system|GO:0012505||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process response to hormone stimulus|GO:0009725||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product ARF11 (AUXIN RESPONSE FACTOR 11); transcription factor  note AUXIN RESPONSE FACTOR 11 (ARF11); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to hormone stimulus, regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: ARF18 (AUXIN RESPONSE FACTOR 18); transcription factor (TAIR:AT3G61830.1); Has 1522 Blast hits to 1299 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 6; Plants - 1503; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT2G46530.3p  transcript_id AT2G46530.3  protein_id AT2G46530.3p  transcript_id AT2G46530.3  
At2g46530	chr2:019105511	0.0	W/19105511-19105560,19105644-19105791,19105891-19105975,19106048-19106138,19106221-19106385,19106467-19106580,19106681-19106753,19106846-19106984,19107156-19107511,19107613-19107800,19107894-19108029	AT2G46530.2  CDS  gene_syn ARF11, AUXIN RESPONSE FACTOR 11, F11C10.34  gene ARF11  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process response to hormone stimulus|GO:0009725||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product ARF11 (AUXIN RESPONSE FACTOR 11); transcription factor  note AUXIN RESPONSE FACTOR 11 (ARF11); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to hormone stimulus, regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: ARF18 (AUXIN RESPONSE FACTOR 18); transcription factor (TAIR:AT3G61830.1); Has 1515 Blast hits to 1294 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 6; Plants - 1496; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT2G46530.2p  transcript_id AT2G46530.2  protein_id AT2G46530.2p  transcript_id AT2G46530.2  
At2g46535	chr2:019109698	0.0	W/19109698-19110153,19110249-19110320	AT2G46535.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61840.1); Has 22 Blast hits to 22 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G46535.1p  transcript_id AT2G46535.1  protein_id AT2G46535.1p  transcript_id AT2G46535.1  
At2g46540	chr2:019111603	0.0	C/19111603-19111681,19111158-19111240,19110687-19110722	AT2G46540.1  CDS  gene_syn F13A10.7, F13A10_7  go_component mitochondrion|GO:0005739|15276431|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; Has 26 Blast hits to 26 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G46540.1p  transcript_id AT2G46540.1  protein_id AT2G46540.1p  transcript_id AT2G46540.1  
At2g46550	chr2:019112264	0.0	C/19112264-19113457	AT2G46550.1  CDS  gene_syn F13A10.8  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G01240.3); Has 47 Blast hits to 43 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G46550.1p  transcript_id AT2G46550.1  protein_id AT2G46550.1p  transcript_id AT2G46550.1  
At2g46560	chr2:019125793	0.0	C/19125793-19125856,19125353-19125679,19122479-19125169,19121869-19122307,19121295-19121523,19120948-19121112,19120558-19120830,19120215-19120460,19119547-19119897,19118061-19119428,19117913-19117969,19117396-19117573,19117036-19117193,19116704-19116927,19116410-19116543,19116088-19116309,19115819-19115997,19115570-19115680	AT2G46560.1  CDS  gene_syn F13A10.9  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); Has 1588 Blast hits to 1099 proteins in 199 species: Archae - 0; Bacteria - 444; Metazoa - 395; Fungi - 420; Plants - 69; Viruses - 0; Other Eukaryotes - 260 (source: NCBI BLink).  protein_id AT2G46560.1p  transcript_id AT2G46560.1  protein_id AT2G46560.1p  transcript_id AT2G46560.1  
At2g46567	chr2:019126641	0.0	C/19126641-19126751	AT2G46567.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G46567.1p  transcript_id AT2G46567.1  protein_id AT2G46567.1p  transcript_id AT2G46567.1  
At2g46570	chr2:019126872	0.0	W/19126872-19126982,19127134-19127285,19127377-19127621,19127700-19127828,19127918-19128859,19128939-19129069	AT2G46570.1  CDS  gene_syn F13A10.10, LAC6, laccase 6  gene LAC6  function putative laccase, a member of laccase family of genes (with 17 members in Arabidopsis).  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process lignin catabolic process|GO:0046274||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function laccase activity|GO:0008471|15940465|ISS  product LAC6 (laccase 6); laccase  note laccase 6 (LAC6); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: shoot, hypocotyl, flower, root, leaf; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: LAC5 (laccase 5); laccase (TAIR:AT2G40370.1); Has 6480 Blast hits to 5329 proteins in 837 species: Archae - 16; Bacteria - 2157; Metazoa - 448; Fungi - 2618; Plants - 888; Viruses - 0; Other Eukaryotes - 353 (source: NCBI BLink).  protein_id AT2G46570.1p  transcript_id AT2G46570.1  protein_id AT2G46570.1p  transcript_id AT2G46570.1  
At2g46572	chr2:019126872	0.0	C/19126872-19129105	AT2G46572.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G46570  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G46572.1  
At2g46580	chr2:019130424	0.0	C/19130424-19130513,19130292-19130341,19130167-19130224,19130049-19130081,19129866-19129961,19129610-19129777,19129409-19129510	AT2G46580.1  CDS  gene_syn F13A10.11  go_process pyridoxine biosynthetic process|GO:0008615||IEA  go_function pyridoxamine-phosphate oxidase activity|GO:0004733||IEA  go_function FMN binding|GO:0010181||IEA  go_component cellular_component|GO:0005575||ND  product pyridoxine 5 -phosphate oxidase-related  note pyridoxine 5 -phosphate oxidase-related; FUNCTIONS IN: FMN binding, pyridoxamine-phosphate oxidase activity; INVOLVED IN: pyridoxine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxamine 5&apos;-phosphate oxidase (InterPro:IPR000659), FMN-binding split barrel (InterPro:IPR012349), Pyridoxamine 5&apos;-phosphate oxidase-related, FMN-binding core (InterPro:IPR011576), FMN-binding split barrel, related (InterPro:IPR009002); Has 1089 Blast hits to 1089 proteins in 214 species: Archae - 0; Bacteria - 365; Metazoa - 49; Fungi - 36; Plants - 20; Viruses - 0; Other Eukaryotes - 619 (source: NCBI BLink).  protein_id AT2G46580.1p  transcript_id AT2G46580.1  protein_id AT2G46580.1p  transcript_id AT2G46580.1  
At2g46590	chr2:019133166	0.0	W/19133166-19133189,19133820-19134905	AT2G46590.2  CDS  gene_syn DAG2, DOF AFFECTING GERMINATION 2, F13A10.12  gene DAG2  function encodes a protein containing Dof zinc finger motifs. expression is limited to vascular system of the mother plant. recessive mutation is inherited as maternal-effect and expression is not detected in the embryo. mutants are defective in seed germination. mutants are more dependent on light and cold treatment and less sensitive to gibberellin during seed germination.  go_process response to cold|GO:0009409|12084825|IMP  go_process response to light stimulus|GO:0009416|12084825|IMP  go_process seed germination|GO:0009845|12084825|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product DAG2 (DOF AFFECTING GERMINATION 2); DNA binding / transcription factor  note DOF AFFECTING GERMINATION 2 (DAG2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to light stimulus, response to cold, seed germination; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: DAG1 (dof affecting germination 1); DNA binding / transcription factor (TAIR:AT3G61850.4); Has 1951 Blast hits to 1544 proteins in 91 species: Archae - 0; Bacteria - 6; Metazoa - 185; Fungi - 54; Plants - 617; Viruses - 0; Other Eukaryotes - 1089 (source: NCBI BLink).  protein_id AT2G46590.2p  transcript_id AT2G46590.2  protein_id AT2G46590.2p  transcript_id AT2G46590.2  
At2g46590	chr2:019133832	0.0	W/19133832-19134905	AT2G46590.1  CDS  gene_syn DAG2, DOF AFFECTING GERMINATION 2, F13A10.12  gene DAG2  function encodes a protein containing Dof zinc finger motifs. expression is limited to vascular system of the mother plant. recessive mutation is inherited as maternal-effect and expression is not detected in the embryo. mutants are defective in seed germination. mutants are more dependent on light and cold treatment and less sensitive to gibberellin during seed germination.  go_component chloroplast|GO:0009507||IEA  go_process response to cold|GO:0009409|12084825|IMP  go_process response to light stimulus|GO:0009416|12084825|IMP  go_process seed germination|GO:0009845|12084825|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product DAG2 (DOF AFFECTING GERMINATION 2); DNA binding / transcription factor  note DOF AFFECTING GERMINATION 2 (DAG2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to light stimulus, response to cold, seed germination; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: DAG1 (dof affecting germination 1); DNA binding / transcription factor (TAIR:AT3G61850.4); Has 2151 Blast hits to 1533 proteins in 91 species: Archae - 0; Bacteria - 6; Metazoa - 183; Fungi - 52; Plants - 617; Viruses - 0; Other Eukaryotes - 1293 (source: NCBI BLink).  protein_id AT2G46590.1p  transcript_id AT2G46590.1  protein_id AT2G46590.1p  transcript_id AT2G46590.1  
At2g46600	chr2:019136070	0.0	W/19136070-19136477	AT2G46600.1  CDS  gene_syn F13A10.13  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding protein, putative  note calcium-binding protein, putative; FUNCTIONS IN: calcium ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: PBP1 (PINOID-BINDING PROTEIN 1); calcium ion binding / protein binding (TAIR:AT5G54490.1); Has 2155 Blast hits to 2154 proteins in 355 species: Archae - 0; Bacteria - 4; Metazoa - 957; Fungi - 168; Plants - 633; Viruses - 0; Other Eukaryotes - 393 (source: NCBI BLink).  protein_id AT2G46600.1p  transcript_id AT2G46600.1  protein_id AT2G46600.1p  transcript_id AT2G46600.1  
At2g46610	chr2:019137831	0.0	C/19137831-19137858,19137569-19137681,19137255-19137490,19136894-19137160,19136769-19136799	AT2G46610.2  CDS  gene_syn F13A10.14  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product arginine/serine-rich splicing factor, putative  note arginine/serine-rich splicing factor, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RSP31; RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT3G61860.1); Has 4546 Blast hits to 4060 proteins in 222 species: Archae - 0; Bacteria - 2; Metazoa - 3185; Fungi - 481; Plants - 518; Viruses - 4; Other Eukaryotes - 356 (source: NCBI BLink).  protein_id AT2G46610.2p  transcript_id AT2G46610.2  protein_id AT2G46610.2p  transcript_id AT2G46610.2  
At2g46610	chr2:019138387	0.0	C/19138387-19138492,19137569-19137681,19137255-19137490,19136894-19137160,19136769-19136799	AT2G46610.1  CDS  gene_syn F13A10.14  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product arginine/serine-rich splicing factor, putative  note arginine/serine-rich splicing factor, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RSP31; RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT3G61860.1); Has 8311 Blast hits to 6757 proteins in 288 species: Archae - 2; Bacteria - 97; Metazoa - 5485; Fungi - 965; Plants - 999; Viruses - 4; Other Eukaryotes - 759 (source: NCBI BLink).  protein_id AT2G46610.1p  transcript_id AT2G46610.1  protein_id AT2G46610.1p  transcript_id AT2G46610.1  
At2g46620	chr2:019139071	0.0	C/19139071-19140546	AT2G46620.1  CDS  gene_syn F13A10.15  go_component endomembrane system|GO:0012505||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATP binding|GO:0005524||ISS  go_function ATPase activity|GO:0016887||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT3G28580.1); Has 9837 Blast hits to 9388 proteins in 1303 species: Archae - 597; Bacteria - 2959; Metazoa - 1717; Fungi - 1281; Plants - 860; Viruses - 16; Other Eukaryotes - 2407 (source: NCBI BLink).  protein_id AT2G46620.1p  transcript_id AT2G46620.1  protein_id AT2G46620.1p  transcript_id AT2G46620.1  
At2g46630	chr2:019145529	0.0	W/19145529-19146713	AT2G46630.1  CDS  gene_syn T3A4.1  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages.  protein_id AT2G46630.1p  transcript_id AT2G46630.1  protein_id AT2G46630.1p  transcript_id AT2G46630.1  
At2g46640	chr2:019148792	0.0	W/19148792-19148797,19148893-19148938,19149193-19149509,19149947-19150276,19150520-19150652,19150738-19150751	AT2G46640.2  CDS  gene_syn T3A4.2, T3A4_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; Has 12 Blast hits to 12 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G46640.2p  transcript_id AT2G46640.2  protein_id AT2G46640.2p  transcript_id AT2G46640.2  
At2g46640	chr2:019149177	0.0	W/19149177-19149509,19149947-19150276,19150520-19150652,19150738-19150751	AT2G46640.1  CDS  gene_syn T3A4.2, T3A4_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; Has 9 Blast hits to 9 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G46640.1p  transcript_id AT2G46640.1  protein_id AT2G46640.1p  transcript_id AT2G46640.1  
At2g46650	chr2:019151807	0.0	W/19151807-19151884,19151989-19152055,19152141-19152394	AT2G46650.1  CDS  gene_syn ARABIDOPSIS CYTOCHROME B5 ISOFORM C, ATCB5-C, B5  1, CB5-C, CYTOCHROME B5 ISOFORM C, T3A4.3, T3A4_3  gene CB5-C  function member of Cytochromes b5  go_component cellular_component|GO:0005575||ND  go_function heme binding|GO:0020037|17322552|ISS  product CB5-C (CYTOCHROME B5 ISOFORM C); heme binding  note CYTOCHROME B5 ISOFORM C (CB5-C); FUNCTIONS IN: heme binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b5, heme-binding site (InterPro:IPR018506), Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: CB5-E (CYTOCHROME B5 ISOFORM E); heme binding (TAIR:AT5G53560.1); Has 2771 Blast hits to 2742 proteins in 374 species: Archae - 1; Bacteria - 19; Metazoa - 793; Fungi - 954; Plants - 542; Viruses - 3; Other Eukaryotes - 459 (source: NCBI BLink).  protein_id AT2G46650.1p  transcript_id AT2G46650.1  protein_id AT2G46650.1p  transcript_id AT2G46650.1  
At2g46660	chr2:019154443	0.0	C/19154443-19155417,19153602-19154219	AT2G46660.1  CDS  gene_syn CYP78A6, T3A4.4, T3A4_4  gene CYP78A6  function member of CYP78A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP78A6; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP78A6; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP78A9 (CYTOCHROME P450 78A9); monooxygenase/ oxygen binding (TAIR:AT3G61880.1); Has 23157 Blast hits to 23083 proteins in 1260 species: Archae - 21; Bacteria - 2141; Metazoa - 10181; Fungi - 4442; Plants - 5572; Viruses - 3; Other Eukaryotes - 797 (source: NCBI BLink).  protein_id AT2G46660.1p  transcript_id AT2G46660.1  protein_id AT2G46660.1p  transcript_id AT2G46660.1  
At2g46662	chr2:019157902	0.0	C/19157902-19158042	AT2G46662.1  CDS  go_component mitochondrion|GO:0005739||IEA  product unknown protein  note unknown protein; LOCATED IN: mitochondrion; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G46662.1p  transcript_id AT2G46662.1  protein_id AT2G46662.1p  transcript_id AT2G46662.1  
At2g46670	chr2:019164781	0.0	C/19164781-19165233,19164589-19164687	AT2G46670.1  CDS  gene_syn T3A4.5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pseudo-response regulator, putative / timing of CAB expression 1-like protein, putative  note pseudo-response regulator, putative / timing of CAB expression 1-like protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: APRR9 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9); protein binding / transcription regulator/ two-component response regulator (TAIR:AT2G46790.2); Has 1149 Blast hits to 1092 proteins in 97 species: Archae - 0; Bacteria - 4; Metazoa - 35; Fungi - 28; Plants - 985; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).  protein_id AT2G46670.1p  transcript_id AT2G46670.1  protein_id AT2G46670.1p  transcript_id AT2G46670.1  
At2g46680	chr2:019166414	0.0	C/19166414-19166773,19165777-19166187	AT2G46680.2  CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX 7, ATHB-7, ATHB7, T3A4.6  gene ATHB-7  function encodes a putative transcription factor that contains a homeodomain closely linked to a leucine zipper motif. Transcript is detected in all tissues examined. Is transcriptionally regulated in an ABA-dependent manner and may act in a signal transduction pathway which mediates a drought response.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to water deprivation|GO:0009414|8771791|IEP  go_process response to abscisic acid stimulus|GO:0009737|8771791|IEP  go_process abscisic acid mediated signaling|GO:0009738|8771791|IGI  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|7948864|ISS  go_function transcription activator activity|GO:0016563|16055682|IDA  product ATHB-7 (ARABIDOPSIS THALIANA HOMEOBOX 7); transcription activator/ transcription factor  note ARABIDOPSIS THALIANA HOMEOBOX 7 (ATHB-7); FUNCTIONS IN: transcription factor activity, transcription activator activity; INVOLVED IN: response to water deprivation, abscisic acid mediated signaling, response to abscisic acid stimulus, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX 12); transcription activator/ transcription factor (TAIR:AT3G61890.1); Has 9659 Blast hits to 9578 proteins in 560 species: Archae - 0; Bacteria - 8; Metazoa - 7735; Fungi - 134; Plants - 1404; Viruses - 7; Other Eukaryotes - 371 (source: NCBI BLink).  protein_id AT2G46680.2p  transcript_id AT2G46680.2  protein_id AT2G46680.2p  transcript_id AT2G46680.2  
At2g46680	chr2:019166414	0.0	C/19166414-19166773,19165777-19166193	AT2G46680.1  CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX 7, ATHB-7, ATHB7, T3A4.6  gene ATHB-7  function encodes a putative transcription factor that contains a homeodomain closely linked to a leucine zipper motif. Transcript is detected in all tissues examined. Is transcriptionally regulated in an ABA-dependent manner and may act in a signal transduction pathway which mediates a drought response.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to water deprivation|GO:0009414|8771791|IEP  go_process response to abscisic acid stimulus|GO:0009737|8771791|IEP  go_process abscisic acid mediated signaling|GO:0009738|8771791|IGI  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|7948864|ISS  go_function transcription activator activity|GO:0016563|16055682|IDA  product ATHB-7 (ARABIDOPSIS THALIANA HOMEOBOX 7); transcription activator/ transcription factor  note ARABIDOPSIS THALIANA HOMEOBOX 7 (ATHB-7); FUNCTIONS IN: transcription factor activity, transcription activator activity; INVOLVED IN: response to water deprivation, abscisic acid mediated signaling, response to abscisic acid stimulus, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX 12); transcription activator/ transcription factor (TAIR:AT3G61890.1); Has 9898 Blast hits to 9790 proteins in 527 species: Archae - 0; Bacteria - 24; Metazoa - 7789; Fungi - 155; Plants - 1439; Viruses - 16; Other Eukaryotes - 475 (source: NCBI BLink).  protein_id AT2G46680.1p  transcript_id AT2G46680.1  protein_id AT2G46680.1p  transcript_id AT2G46680.1  
At2g46685	chr2:019176126	0.0	W/19176126-19176261	AT2G46685.1  miRNA  gene_syn MICRORNA 166, MICRORNA 166A, MIR166, MIR166A  gene MIR166A  function Encodes a microRNA that targets several HD-ZIPIII family members including PHV, PHB, REV, ATHB-8, and ATHB-15. This particular miRNA is involved in the regulation of vascular development in inflorescence stems, primarily through the regulation of mRNA cleavage of the class III homeodomain-leucine zipper transcription factor ATHB15. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCGGACCAGGCUUCAUUCCCC  go_process phloem or xylem histogenesis|GO:0010087|15773855|IMP  go_process gene silencing by miRNA, mRNA cleavage|GO:0035279|15773855|IDA  product MIR166A (MICRORNA 166A); miRNA  transcript_id AT2G46685.1  
At2g46690	chr2:019180904	0.0	W/19180904-19181269	AT2G46690.1  CDS  gene_syn T3A4.7  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT3G61900.1); Has 656 Blast hits to 651 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 655; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G46690.1p  transcript_id AT2G46690.1  protein_id AT2G46690.1p  transcript_id AT2G46690.1  
At2g46700	chr2:019184891	0.0	C/19184891-19184892,19184738-19184779,19184526-19184634,19184358-19184436,19183974-19184270,19183780-19183889,19183583-19183690,19183430-19183492,19183188-19183355,19182968-19183105	AT2G46700.2  CDS  gene_syn T3A4.8  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function calcium-dependent protein serine/threonine phosphatase activity|GO:0004723||ISS  go_function calcium ion binding|GO:0005509||ISS  go_function kinase activity|GO:0016301||ISS  product calcium-dependent protein kinase, putative / CDPK, putative  note calcium-dependent protein kinase, putative / CDPK, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase, putative / CDPK, putative (TAIR:AT5G24430.1).  protein_id AT2G46700.2p  transcript_id AT2G46700.2  protein_id AT2G46700.2p  transcript_id AT2G46700.2  
At2g46700	chr2:019185888	0.0	C/19185888-19186430,19184967-19185097,19184738-19184779,19184526-19184634,19184358-19184436,19183974-19184270,19183780-19183889,19183583-19183690,19183430-19183492,19183188-19183355,19182968-19183105	AT2G46700.1  CDS  gene_syn T3A4.8  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function calcium-dependent protein serine/threonine phosphatase activity|GO:0004723||ISS  go_function calcium ion binding|GO:0005509||ISS  go_function kinase activity|GO:0016301||ISS  product calcium-dependent protein kinase, putative / CDPK, putative  note calcium-dependent protein kinase, putative / CDPK, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase, putative / CDPK, putative (TAIR:AT5G24430.1); Has 85455 Blast hits to 84176 proteins in 1956 species: Archae - 75; Bacteria - 8032; Metazoa - 36588; Fungi - 8410; Plants - 14367; Viruses - 574; Other Eukaryotes - 17409 (source: NCBI BLink).  protein_id AT2G46700.1p  transcript_id AT2G46700.1  protein_id AT2G46700.1p  transcript_id AT2G46700.1  
At2g46710	chr2:019192105	0.0	W/19192105-19192535,19193448-19193568,19193659-19193778,19193870-19194100,19194192-19194656	AT2G46710.1  CDS  gene_syn T3A4.9  go_component intracellular|GO:0005622||IEA  go_process signal transduction|GO:0007165||IEA  go_function Rac GTPase activator activity|GO:0030675||ISS  product rac GTPase activating protein, putative  note rac GTPase activating protein, putative; FUNCTIONS IN: Rac GTPase activator activity; INVOLVED IN: signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095), Rho GTPase activation protein (InterPro:IPR008936), RhoGAP (InterPro:IPR000198); BEST Arabidopsis thaliana protein match is: rac GTPase activating protein, putative (TAIR:AT4G03100.1); Has 2458 Blast hits to 2456 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 1904; Fungi - 213; Plants - 103; Viruses - 0; Other Eukaryotes - 238 (source: NCBI BLink).  protein_id AT2G46710.1p  transcript_id AT2G46710.1  protein_id AT2G46710.1p  transcript_id AT2G46710.1  
At2g46720	chr2:019198821	0.0	W/19198821-19200221	AT2G46720.1  CDS  gene_syn 3-KETOACYL-COA SYNTHASE 13, HIC, HIGH CARBON DIOXIDE, KCS13, T3A4.10  gene KCS13  function Encodes KCS13, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_function catalytic activity|GO:0003824||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_process very-long-chain fatty acid metabolic process|GO:0000038|10074711|IDA  go_process fatty acid elongation|GO:0030497|10074711|IDA  go_process cuticle development|GO:0042335|10074711|IMP  go_function acyltransferase activity|GO:0008415||ISS  product KCS13 (3-KETOACYL-COA SYNTHASE 13); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups  note 3-KETOACYL-COA SYNTHASE 13 (KCS13); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: fatty acid elongation, very-long-chain fatty acid metabolic process, cuticle development; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: rosette leaf, cauline leaf, fruit, flower; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038), Chalcone and stilbene synthases, C-terminal (InterPro:IPR012328); BEST Arabidopsis thaliana protein match is: KCS14 (3-KETOACYL-COA SYNTHASE 14); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups (TAIR:AT3G10280.1); Has 2631 Blast hits to 2621 proteins in 633 species: Archae - 0; Bacteria - 783; Metazoa - 0; Fungi - 7; Plants - 1726; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).  protein_id AT2G46720.1p  transcript_id AT2G46720.1  protein_id AT2G46720.1p  transcript_id AT2G46720.1  
At2g46730	chr2:019200860	0.0	W/19200860-19203138	AT2G46730.1  pseudogenic_transcript  pseudo  gene_syn F19D11.1  note pseudogene, similar to 68 kDa protein, blastp match of 68% identity and 4.7e-17 P-value to GP|7271113|emb|CAB81547.1||AJ276420 68 kDa protein {Cicer arietinum}  
At2g46735	chr2:019204475	0.0	W/19204475-19204957	AT2G46735.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G46735.1p  transcript_id AT2G46735.1  protein_id AT2G46735.1p  transcript_id AT2G46735.1  
At2g46740	chr2:019206754	0.0	C/19206754-19207455,19206352-19206607,19205992-19206093,19205182-19205894	AT2G46740.1  CDS  gene_syn F19D11.2  go_component cell wall|GO:0005618|15593128|IDA  go_function catalytic activity|GO:0003824||IEA  go_function D-arabinono-1,4-lactone oxidase activity|GO:0003885||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity; LOCATED IN: cell wall; EXPRESSED IN: leaf apex, root; CONTAINS InterPro DOMAIN/s: D-arabinono-1,4-lactone oxidase (InterPro:IPR007173), FAD-binding, type 2 (InterPro:IPR016166), Plant-specific FAD-dependent oxidoreductase (InterPro:IPR010030), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT2G46750.1); Has 1671 Blast hits to 1587 proteins in 466 species: Archae - 6; Bacteria - 989; Metazoa - 111; Fungi - 154; Plants - 140; Viruses - 0; Other Eukaryotes - 271 (source: NCBI BLink).  protein_id AT2G46740.1p  transcript_id AT2G46740.1  protein_id AT2G46740.1p  transcript_id AT2G46740.1  
At2g46750	chr2:019210220	0.0	C/19210220-19210909,19209860-19210115,19209260-19209361,19208443-19209170	AT2G46750.1  CDS  gene_syn F19D11.3  go_component membrane|GO:0016020||IEA  go_function catalytic activity|GO:0003824||IEA  go_function D-arabinono-1,4-lactone oxidase activity|GO:0003885||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity; LOCATED IN: membrane; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: D-arabinono-1,4-lactone oxidase (InterPro:IPR007173), FAD-binding, type 2 (InterPro:IPR016166), Plant-specific FAD-dependent oxidoreductase (InterPro:IPR010030), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT2G46760.1); Has 1288 Blast hits to 1232 proteins in 391 species: Archae - 10; Bacteria - 734; Metazoa - 79; Fungi - 136; Plants - 139; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink).  protein_id AT2G46750.1p  transcript_id AT2G46750.1  protein_id AT2G46750.1p  transcript_id AT2G46750.1  
At2g46760	chr2:019214453	0.0	C/19214453-19215166,19214111-19214366,19213880-19213981,19213028-19213767	AT2G46760.1  CDS  gene_syn F19D11.4  go_component membrane|GO:0016020||IEA  go_function catalytic activity|GO:0003824||IEA  go_function D-arabinono-1,4-lactone oxidase activity|GO:0003885||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity; LOCATED IN: membrane; EXPRESSED IN: sperm cell, inflorescence meristem, hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: D-arabinono-1,4-lactone oxidase (InterPro:IPR007173), FAD-binding, type 2 (InterPro:IPR016166), Plant-specific FAD-dependent oxidoreductase (InterPro:IPR010030), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT2G46750.1); Has 2193 Blast hits to 2107 proteins in 540 species: Archae - 14; Bacteria - 1427; Metazoa - 115; Fungi - 191; Plants - 147; Viruses - 0; Other Eukaryotes - 299 (source: NCBI BLink).  protein_id AT2G46760.1p  transcript_id AT2G46760.1  protein_id AT2G46760.1p  transcript_id AT2G46760.1  
At2g46770	chr2:019222636	0.0	C/19222636-19222822,19222038-19222324,19220917-19221540	AT2G46770.1  CDS  gene_syn ANAC043, ARABIDOPSIS NAC DOMAIN PROTEIN 43, EMB2301, EMBRYO DEFECTIVE 2301, F19D11.5, NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, NST1  gene EMB2301  function NAC transcription factor NST1. NST1 and NST2 are redundant in regulating secondary wall thickening in anther walls and siliques. NST1 promoter was detected in various tissues in which lignified secondary walls develop.  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process lignin biosynthetic process|GO:0009809|17237351|IGI  go_process secondary cell wall biogenesis|GO:0009834|16214898|IMP  go_process secondary cell wall biogenesis|GO:0009834|17237351|IGI  go_process anther dehiscence|GO:0009901|16214898|IGI  go_process fruit dehiscence|GO:0010047|18657234|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|18952777|IDA  product EMB2301 (EMBRYO DEFECTIVE 2301); transcription activator/ transcription factor  note EMBRYO DEFECTIVE 2301 (EMB2301); FUNCTIONS IN: transcription factor activity, transcription activator activity; INVOLVED IN: in 6 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC066 (ARABIDOPSIS NAC DOMAIN PROTEIN 66); transcription activator/ transcription factor (TAIR:AT3G61910.1); Has 1595 Blast hits to 1593 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1593; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G46770.1p  transcript_id AT2G46770.1  protein_id AT2G46770.1p  transcript_id AT2G46770.1  
At2g46780	chr2:019229516	0.0	W/19229516-19229716,19229807-19229942,19230090-19230237,19230341-19230377,19230468-19230834,19230922-19231043	AT2G46780.1  CDS  gene_syn F19D11.6  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA binding / nucleic acid binding / nucleotide binding  note RNA binding / nucleic acid binding / nucleotide binding; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT1G33470.2); Has 14373 Blast hits to 11497 proteins in 543 species: Archae - 2; Bacteria - 693; Metazoa - 8215; Fungi - 1420; Plants - 2628; Viruses - 0; Other Eukaryotes - 1415 (source: NCBI BLink).  protein_id AT2G46780.1p  transcript_id AT2G46780.1  protein_id AT2G46780.1p  transcript_id AT2G46780.1  
At2g46787	chr2:019232377	0.0	W/19232377-19232523	AT2G46787.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G46787.1p  transcript_id AT2G46787.1  protein_id AT2G46787.1p  transcript_id AT2G46787.1  
At2g46790	chr2:019232874	0.0	W/19232874-19233060,19233161-19233322,19233420-19233550,19233638-19233757,19233918-19234189,19234274-19234709,19234803-19234901	AT2G46790.1  CDS  gene_syn APRR9, ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9, F19D11.7, PRR9, PSEUDO-RESPONSE REGULATOR 9, TL1, TOC1-LIKE PROTEIN 1  gene APRR9  function Pseudo-response regulator PRR9. Involved in clock function. PRR7 and PRR9 are partially redundant essential components of a temperature-sensitive circadian system. CCA1 and LHY had a positive effect on PRR9. Interact with TOC1 in a yeast two-hybrid assay.  go_component cellular_component|GO:0005575||ND  go_process circadian rhythm|GO:0007623|11100772|TAS  go_process circadian rhythm|GO:0007623|12068096|TAS  go_process circadian rhythm|GO:0007623|15767265|IMP  go_process response to temperature stimulus|GO:0009266|15767265|IGI  go_process red or far red light signaling pathway|GO:0010017|16891401|IMP  go_function two-component response regulator activity|GO:0000156||ISS  go_function protein binding|GO:0005515|14634162|IPI  go_function transcription regulator activity|GO:0030528|12068096|TAS  product APRR9 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9); protein binding / transcription regulator/ two-component response regulator  note ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9 (APRR9); FUNCTIONS IN: protein binding, transcription regulator activity, two-component response regulator activity; INVOLVED IN: red or far red light signaling pathway, response to temperature stimulus, circadian rhythm; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver region (InterPro:IPR001789), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: pseudo-response regulator, putative / timing of CAB expression 1-like protein, putative (TAIR:AT2G46670.1); Has 40547 Blast hits to 39718 proteins in 1791 species: Archae - 139; Bacteria - 33489; Metazoa - 375; Fungi - 439; Plants - 1605; Viruses - 4; Other Eukaryotes - 4496 (source: NCBI BLink).  protein_id AT2G46790.1p  transcript_id AT2G46790.1  protein_id AT2G46790.1p  transcript_id AT2G46790.1  
At2g46790	chr2:019233422	0.0	W/19233422-19233550,19233638-19233757,19233918-19234189,19234274-19234709,19234803-19234901	AT2G46790.2  CDS  gene_syn APRR9, ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9, F19D11.7, PRR9, PSEUDO-RESPONSE REGULATOR 9, TL1, TOC1-LIKE PROTEIN 1  gene APRR9  function Pseudo-response regulator PRR9. Involved in clock function. PRR7 and PRR9 are partially redundant essential components of a temperature-sensitive circadian system. CCA1 and LHY had a positive effect on PRR9. Interact with TOC1 in a yeast two-hybrid assay.  go_component cellular_component|GO:0005575||ND  go_process circadian rhythm|GO:0007623|11100772|TAS  go_process circadian rhythm|GO:0007623|12068096|TAS  go_process circadian rhythm|GO:0007623|15767265|IMP  go_process response to temperature stimulus|GO:0009266|15767265|IGI  go_process red or far red light signaling pathway|GO:0010017|16891401|IMP  go_function two-component response regulator activity|GO:0000156||ISS  go_function protein binding|GO:0005515|14634162|IPI  go_function transcription regulator activity|GO:0030528|12068096|TAS  product APRR9 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9); protein binding / transcription regulator/ two-component response regulator  note ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9 (APRR9); FUNCTIONS IN: protein binding, transcription regulator activity, two-component response regulator activity; INVOLVED IN: red or far red light signaling pathway, response to temperature stimulus, circadian rhythm; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver region (InterPro:IPR001789), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: pseudo-response regulator, putative / timing of CAB expression 1-like protein, putative (TAIR:AT2G46670.1); Has 2230 Blast hits to 1844 proteins in 257 species: Archae - 2; Bacteria - 136; Metazoa - 372; Fungi - 110; Plants - 1270; Viruses - 3; Other Eukaryotes - 337 (source: NCBI BLink).  protein_id AT2G46790.2p  transcript_id AT2G46790.2  protein_id AT2G46790.2p  transcript_id AT2G46790.2  
At2g46800	chr2:019238128	0.0	W/19238128-19239324	AT2G46800.1  CDS  gene_syn ATMTP1, F19D11.8, MTP1, ZAT, ZAT1, ZINC TRANSPORTER OF ARABIDOPSIS THALIANA, ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, ZINC TRANSPORTER ZAT  gene ZAT  function Encodes a member of the zinc transporter (ZAT) and cation diffusion facilitator (CDF) families. It is expressed throughout the plant, especially in dividing, differentiating and expanding cells. The protein is localized to the vacuolar membrane. Mediates Zn ion homeostasis.  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component vacuolar membrane|GO:0005774|16038907|IDA  go_process zinc ion transport|GO:0006829|11882948|IDA  go_process zinc ion transport|GO:0006829||ISS  go_process cellular zinc ion homeostasis|GO:0006882|11500563|NAS  go_process cellular zinc ion homeostasis|GO:0006882|16038907|TAS  go_process response to metal ion|GO:0010038|10069843|IMP  go_function zinc ion transmembrane transporter activity|GO:0005385|10069843|IMP  go_function zinc ion transmembrane transporter activity|GO:0005385|16038907|IDA  go_function zinc ion transmembrane transporter activity|GO:0005385||ISS  go_function inorganic anion transmembrane transporter activity|GO:0015103||ISS  go_function metal ion transmembrane transporter activity|GO:0046873|11882948|IDA  product ZAT (ZINC TRANSPORTER OF ARABIDOPSIS THALIANA); inorganic anion transmembrane transporter/ metal ion transmembrane transporter/ zinc ion transmembrane transporter  note ZINC TRANSPORTER OF ARABIDOPSIS THALIANA (ZAT); FUNCTIONS IN: zinc ion transmembrane transporter activity, inorganic anion transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: cellular zinc ion homeostasis, zinc ion transport, response to metal ion; LOCATED IN: vacuolar membrane, plasma membrane, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: MTPB1 (METAL TOLERANCE PROTEIN B1); efflux transmembrane transporter/ inorganic anion transmembrane transporter/ zinc ion transmembrane transporter (TAIR:AT2G29410.1); Has 13050 Blast hits to 7536 proteins in 1286 species: Archae - 109; Bacteria - 6778; Metazoa - 2561; Fungi - 645; Plants - 332; Viruses - 23; Other Eukaryotes - 2602 (source: NCBI BLink).  protein_id AT2G46800.1p  transcript_id AT2G46800.1  protein_id AT2G46800.1p  transcript_id AT2G46800.1  
At2g46800	chr2:019238128	0.0	W/19238128-19239324	AT2G46800.2  CDS  gene_syn ATMTP1, F19D11.8, MTP1, ZAT, ZAT1, ZINC TRANSPORTER OF ARABIDOPSIS THALIANA, ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, ZINC TRANSPORTER ZAT  gene ZAT  function Encodes a member of the zinc transporter (ZAT) and cation diffusion facilitator (CDF) families. It is expressed throughout the plant, especially in dividing, differentiating and expanding cells. The protein is localized to the vacuolar membrane. Mediates Zn ion homeostasis.  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component vacuolar membrane|GO:0005774|16038907|IDA  go_process zinc ion transport|GO:0006829|11882948|IDA  go_process zinc ion transport|GO:0006829||ISS  go_process cellular zinc ion homeostasis|GO:0006882|11500563|NAS  go_process cellular zinc ion homeostasis|GO:0006882|16038907|TAS  go_process response to metal ion|GO:0010038|10069843|IMP  go_function zinc ion transmembrane transporter activity|GO:0005385|10069843|IMP  go_function zinc ion transmembrane transporter activity|GO:0005385|16038907|IDA  go_function zinc ion transmembrane transporter activity|GO:0005385||ISS  go_function inorganic anion transmembrane transporter activity|GO:0015103||ISS  go_function metal ion transmembrane transporter activity|GO:0046873|11882948|IDA  product ZAT (ZINC TRANSPORTER OF ARABIDOPSIS THALIANA); inorganic anion transmembrane transporter/ metal ion transmembrane transporter/ zinc ion transmembrane transporter  note ZINC TRANSPORTER OF ARABIDOPSIS THALIANA (ZAT); FUNCTIONS IN: zinc ion transmembrane transporter activity, inorganic anion transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: cellular zinc ion homeostasis, zinc ion transport, response to metal ion; LOCATED IN: vacuolar membrane, plasma membrane, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: MTPB1 (METAL TOLERANCE PROTEIN B1); efflux transmembrane transporter/ inorganic anion transmembrane transporter/ zinc ion transmembrane transporter (TAIR:AT2G29410.1); Has 13050 Blast hits to 7536 proteins in 1286 species: Archae - 109; Bacteria - 6778; Metazoa - 2561; Fungi - 645; Plants - 332; Viruses - 23; Other Eukaryotes - 2602 (source: NCBI BLink).  protein_id AT2G46800.2p  transcript_id AT2G46800.2  protein_id AT2G46800.2p  transcript_id AT2G46800.2  
At2g46810	chr2:019239694	0.0	W/19239694-19239765,19241168-19241767,19241846-19242217,19242302-19242373	AT2G46810.1  CDS  gene_syn F19D11.9  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT3G61950.1); Has 843 Blast hits to 832 proteins in 111 species: Archae - 0; Bacteria - 16; Metazoa - 39; Fungi - 24; Plants - 705; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT2G46810.1p  transcript_id AT2G46810.1  protein_id AT2G46810.1p  transcript_id AT2G46810.1  
At2g46820	chr2:019243729	0.0	W/19243729-19243885,19243976-19244097,19244185-19244271,19244357-19244419,19244678-19244715,19244813-19244870	AT2G46820.1  CDS  gene_syn F19D11.10, PHOTOSYSTEM I P SUBUNIT, PLASTID TRANSCRIPTIONALLY ACTIVE 8, PSAP, PSI-P, PTAC8, THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA, TMP14  gene PSI-P  function Encodes the P subunit of Photosystem I. About 25% of the TMP14 pool appeared to be phosphorylated, and this ratio is not affected by light. Contains seven phosphorylation sites on threonine residue and chloroplast targeting signal. Located in the proximity of PSI-L, -H and -O subunits.  go_component nucleoid|GO:0009295|16326926|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component plastid chromosome|GO:0009508|16326926|IDA  go_component chloroplast envelope|GO:0009941|12883043|ISS  go_component chloroplast photosystem I|GO:0030093|16109415|IDA  go_component chloroplast photosystem I|GO:0030093|16109415|IMP  go_process photosynthetic electron transport in photosystem I|GO:0009773|16109415|IDA  go_function DNA binding|GO:0003677|12883043|ISS  product PSI-P (PHOTOSYSTEM I P SUBUNIT); DNA binding  note PHOTOSYSTEM I P SUBUNIT (PSI-P); FUNCTIONS IN: DNA binding; INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: in 7 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52220.1); Has 357 Blast hits to 357 proteins in 56 species: Archae - 0; Bacteria - 122; Metazoa - 0; Fungi - 0; Plants - 142; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT2G46820.1p  transcript_id AT2G46820.1  protein_id AT2G46820.1p  transcript_id AT2G46820.1  
At2g46820	chr2:019243729	0.0	W/19243729-19243885,19243976-19244097,19244185-19244271,19244357-19244419,19244678-19244715,19244813-19244870	AT2G46820.2  CDS  gene_syn F19D11.10, PHOTOSYSTEM I P SUBUNIT, PLASTID TRANSCRIPTIONALLY ACTIVE 8, PSAP, PSI-P, PTAC8, THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA, TMP14  gene PSI-P  function Encodes the P subunit of Photosystem I. About 25% of the TMP14 pool appeared to be phosphorylated, and this ratio is not affected by light. Contains seven phosphorylation sites on threonine residue and chloroplast targeting signal. Located in the proximity of PSI-L, -H and -O subunits.  go_component nucleoid|GO:0009295|16326926|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastid chromosome|GO:0009508|16326926|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast envelope|GO:0009941|12883043|ISS  go_component chloroplast photosystem I|GO:0030093|16109415|IDA  go_component chloroplast photosystem I|GO:0030093|16109415|IMP  go_process photosynthetic electron transport in photosystem I|GO:0009773|16109415|IDA  go_function DNA binding|GO:0003677|12883043|ISS  product PSI-P (PHOTOSYSTEM I P SUBUNIT); DNA binding  note PHOTOSYSTEM I P SUBUNIT (PSI-P); FUNCTIONS IN: DNA binding; INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52220.1); Has 357 Blast hits to 357 proteins in 56 species: Archae - 0; Bacteria - 122; Metazoa - 0; Fungi - 0; Plants - 142; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT2G46820.2p  transcript_id AT2G46820.2  protein_id AT2G46820.2p  transcript_id AT2G46820.2  
At2g46830	chr2:019246005	0.0	W/19246005-19246043,19246123-19246234,19246323-19246384,19246863-19247057,19247145-19247318,19247402-19248283,19248355-19248717	AT2G46830.1  CDS  gene_syn CCA1, CIRCADIAN CLOCK ASSOCIATED 1, F19D11.11, MYB-RELATED DNA BINDING PROTEIN  gene CCA1  function Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.  go_component nucleus|GO:0005634|19218364|IDA  go_process circadian rhythm|GO:0007623|19218364|IMP  go_process circadian rhythm|GO:0007623|9657153|TAS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to organic nitrogen|GO:0010243|18344319|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_process long-day photoperiodism, flowering|GO:0048574|19011118|IGI  go_function DNA binding|GO:0003677|18344319|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|9144958|IMP  go_function transcription repressor activity|GO:0016564|11486091|IEP  product CCA1 (CIRCADIAN CLOCK ASSOCIATED 1); DNA binding / transcription activator/ transcription factor/ transcription repressor  note CIRCADIAN CLOCK ASSOCIATED 1 (CCA1); FUNCTIONS IN: transcription repressor activity, transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: in 11 processes; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: LHY (LATE ELONGATED HYPOCOTYL); DNA binding / transcription factor (TAIR:AT1G01060.3); Has 3325 Blast hits to 1488 proteins in 211 species: Archae - 3; Bacteria - 63; Metazoa - 414; Fungi - 195; Plants - 719; Viruses - 7; Other Eukaryotes - 1924 (source: NCBI BLink).  protein_id AT2G46830.1p  transcript_id AT2G46830.1  protein_id AT2G46830.1p  transcript_id AT2G46830.1  
At2g46830	chr2:019246896	0.0	W/19246896-19247057,19247145-19247318,19247402-19248283,19248355-19248717	AT2G46830.2  CDS  gene_syn CCA1, CIRCADIAN CLOCK ASSOCIATED 1, F19D11.11, MYB-RELATED DNA BINDING PROTEIN  gene CCA1  function Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.  go_component nucleus|GO:0005634|19218364|IDA  go_process circadian rhythm|GO:0007623|19218364|IMP  go_process circadian rhythm|GO:0007623|9657153|TAS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to organic nitrogen|GO:0010243|18344319|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_process long-day photoperiodism, flowering|GO:0048574|19011118|IGI  go_function DNA binding|GO:0003677|18344319|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|9144958|IMP  go_function transcription repressor activity|GO:0016564|11486091|IEP  product CCA1 (CIRCADIAN CLOCK ASSOCIATED 1); DNA binding / transcription activator/ transcription factor/ transcription repressor  note CIRCADIAN CLOCK ASSOCIATED 1 (CCA1); FUNCTIONS IN: transcription repressor activity, transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: in 11 processes; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: LHY (LATE ELONGATED HYPOCOTYL); DNA binding / transcription factor (TAIR:AT1G01060.4); Has 2590 Blast hits to 762 proteins in 175 species: Archae - 3; Bacteria - 63; Metazoa - 352; Fungi - 187; Plants - 154; Viruses - 7; Other Eukaryotes - 1824 (source: NCBI BLink).  protein_id AT2G46830.2p  transcript_id AT2G46830.2  protein_id AT2G46830.2p  transcript_id AT2G46830.2  
At2g46840	chr2:019249756	0.0	C/19249756-19249909,19249191-19249654	AT2G46840.1  CDS  gene_syn F19D11.12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: 3  exoribonuclease family domain 1 protein-related (TAIR:AT2G47220.1); Has 41 Blast hits to 41 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G46840.1p  transcript_id AT2G46840.1  protein_id AT2G46840.1p  transcript_id AT2G46840.1  
At2g46850	chr2:019251083	0.0	W/19251083-19251863,19252124-19252207,19252277-19253313	AT2G46850.1  CDS  gene_syn F19D11.13  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  product ATP binding / protein kinase/ protein tyrosine kinase  note ATP binding / protein kinase/ protein tyrosine kinase; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G23450.2); Has 14254 Blast hits to 14061 proteins in 404 species: Archae - 0; Bacteria - 73; Metazoa - 2017; Fungi - 136; Plants - 11571; Viruses - 17; Other Eukaryotes - 440 (source: NCBI BLink).  protein_id AT2G46850.1p  transcript_id AT2G46850.1  protein_id AT2G46850.1p  transcript_id AT2G46850.1  
At2g46860	chr2:019253843	0.0	W/19253843-19254007,19254096-19254161,19254238-19254345,19254428-19254493,19254649-19254769,19254848-19254929,19255018-19255060	AT2G46860.1  CDS  gene_syn Arabidopsis thaliana pyrophosphorylase 3, AtPPa3, F19D11.23, F19D11_23  gene AtPPa3  function Encodes a protein that might have inorganic pyrophosphatase activity.  go_component cytoplasm|GO:0005737||IEA  go_process phosphate metabolic process|GO:0006796||IEA  go_component membrane|GO:0016020||ISS  go_process metabolic process|GO:0008152||ISS  go_function inorganic diphosphatase activity|GO:0004427|15135060|NAS  go_function pyrophosphatase activity|GO:0016462||ISS  product AtPPa3 (Arabidopsis thaliana pyrophosphorylase 3); inorganic diphosphatase/ pyrophosphatase  note Arabidopsis thaliana pyrophosphorylase 3 (AtPPa3); FUNCTIONS IN: inorganic diphosphatase activity, pyrophosphatase activity; INVOLVED IN: phosphate metabolic process, metabolic process; LOCATED IN: membrane, cytoplasm; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Inorganic pyrophosphatase (InterPro:IPR008162); BEST Arabidopsis thaliana protein match is: AtPPa1 (Arabidopsis thaliana pyrophosphorylase 1); inorganic diphosphatase (TAIR:AT1G01050.1); Has 4133 Blast hits to 4133 proteins in 1145 species: Archae - 108; Bacteria - 2770; Metazoa - 199; Fungi - 190; Plants - 181; Viruses - 0; Other Eukaryotes - 685 (source: NCBI BLink).  protein_id AT2G46860.1p  transcript_id AT2G46860.1  protein_id AT2G46860.1p  transcript_id AT2G46860.1  
At2g46870	chr2:019261313	0.0	W/19261313-19262245	AT2G46870.1  CDS  gene_syn F19D11.25, NGA1, NGATHA1  gene NGA1  go_component cellular_component|GO:0005575||ND  go_process flower development|GO:0009908|16603651|IMP  go_process leaf development|GO:0048366|16603651|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product NGA1 (NGATHA1); transcription factor  note NGATHA1 (NGA1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: flower development, leaf development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: NGA2 (NGATHA2); transcription factor (TAIR:AT3G61970.1); Has 734 Blast hits to 729 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 734; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G46870.1p  transcript_id AT2G46870.1  protein_id AT2G46870.1p  transcript_id AT2G46870.1  
At2g46880	chr2:019266115	0.0	C/19266115-19266412,19265285-19265970	AT2G46880.2  CDS  gene_syn ATPAP14, F14M4.29, PAP14, PURPLE ACID PHOSPHATASE 14  gene PAP14  go_component endomembrane system|GO:0012505||IEA  go_function acid phosphatase activity|GO:0003993|16244908|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PAP14 (PURPLE ACID PHOSPHATASE 14); acid phosphatase/ protein serine/threonine phosphatase  note PURPLE ACID PHOSPHATASE 14 (PAP14); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Phosphoesterase At2g46880 (InterPro:IPR011230); BEST Arabidopsis thaliana protein match is: ATPAP29 (ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 29); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT5G63140.1); Has 296 Blast hits to 295 proteins in 98 species: Archae - 0; Bacteria - 85; Metazoa - 0; Fungi - 126; Plants - 63; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT2G46880.2p  transcript_id AT2G46880.2  protein_id AT2G46880.2p  transcript_id AT2G46880.2  
At2g46880	chr2:019266115	0.0	C/19266115-19266412,19265289-19265970,19265041-19265216,19264910-19264959	AT2G46880.1  CDS  gene_syn ATPAP14, F14M4.29, PAP14, PURPLE ACID PHOSPHATASE 14  gene PAP14  go_component endomembrane system|GO:0012505||IEA  go_function acid phosphatase activity|GO:0003993|16244908|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PAP14 (PURPLE ACID PHOSPHATASE 14); acid phosphatase/ protein serine/threonine phosphatase  note PURPLE ACID PHOSPHATASE 14 (PAP14); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Phosphoesterase At2g46880 (InterPro:IPR011230); BEST Arabidopsis thaliana protein match is: ATPAP29 (ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 29); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT5G63140.1); Has 313 Blast hits to 309 proteins in 101 species: Archae - 0; Bacteria - 100; Metazoa - 0; Fungi - 128; Plants - 63; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT2G46880.1p  transcript_id AT2G46880.1  protein_id AT2G46880.1p  transcript_id AT2G46880.1  
At2g46890	chr2:019267910	0.0	C/19267910-19268134,19267560-19267823,19266879-19267358	AT2G46890.1  CDS  gene_syn F14M4.28  go_component cytoplasm|GO:0005737||IEA  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function oxidoreductase activity, acting on the CH-CH group of donors|GO:0016627||IEA  product oxidoreductase, acting on the CH-CH group of donors  note oxidoreductase, acting on the CH-CH group of donors; FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system, integral to membrane, cytoplasm; CONTAINS InterPro DOMAIN/s: 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal (InterPro:IPR001104), Protein of unknown function DUF1295 (InterPro:IPR010721); BEST Arabidopsis thaliana protein match is: oxidoreductase, acting on the CH-CH group of donors (TAIR:AT1G18180.1); Has 1542 Blast hits to 1542 proteins in 207 species: Archae - 2; Bacteria - 258; Metazoa - 69; Fungi - 95; Plants - 57; Viruses - 0; Other Eukaryotes - 1061 (source: NCBI BLink).  protein_id AT2G46890.1p  transcript_id AT2G46890.1  protein_id AT2G46890.1p  transcript_id AT2G46890.1  
At2g46900	chr2:019269678	0.0	W/19269678-19269836,19270075-19270595,19270701-19271621,19271705-19271987	AT2G46900.1  CDS  gene_syn F14M4.27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix, Nulp1-type (InterPro:IPR006994); Has 3014 Blast hits to 2357 proteins in 239 species: Archae - 2; Bacteria - 96; Metazoa - 1166; Fungi - 321; Plants - 100; Viruses - 47; Other Eukaryotes - 1282 (source: NCBI BLink).  protein_id AT2G46900.1p  transcript_id AT2G46900.1  protein_id AT2G46900.1p  transcript_id AT2G46900.1  
At2g46910	chr2:019272427	0.0	W/19272427-19272579,19272654-19272776,19272869-19273003,19273089-19273184,19273263-19273343,19273429-19273515,19273595-19273656,19273739-19273856	AT2G46910.1  CDS  gene_syn F14M4.46  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_function structural molecule activity|GO:0005198||IEA  go_component plastoglobule|GO:0010287|16461379|IDA  go_process biological_process|GO:0008150||ND  product plastid-lipid associated protein PAP / fibrillin family protein  note plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, plastoglobule; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PAP fibrillin (InterPro:IPR006843); Has 169 Blast hits to 169 proteins in 57 species: Archae - 0; Bacteria - 48; Metazoa - 0; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G46910.1p  transcript_id AT2G46910.1  protein_id AT2G46910.1p  transcript_id AT2G46910.1  
At2g46915	chr2:019277295	0.0	C/19277295-19277707,19277127-19277214,19276923-19277056,19276649-19276828,19276425-19276560,19275938-19276266,19275516-19275645,19275247-19275378,19275097-19275141,19274941-19275020,19274774-19274870,19274591-19274680,19274422-19274475,19274243-19274308,19274018-19274170	AT2G46915.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19340.1); Has 101 Blast hits to 96 proteins in 30 species: Archae - 0; Bacteria - 24; Metazoa - 10; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT2G46915.1p  transcript_id AT2G46915.1  protein_id AT2G46915.1p  transcript_id AT2G46915.1  
At2g46920	chr2:019278882	0.0	C/19278882-19280921,19278677-19278790,19278343-19278607,19278106-19278257	AT2G46920.1  CDS  gene_syn F14M4.25, POL, poltergeist  gene POL  function Pol mutations are recessive, partial suppressors of meristem defects in strong clv1 and clv3 mutants, and nearly complete suppressors of weak clv1 mutants. Single mutants appear normal. Acts downstream of the CLV signaling pathway in meristem development and is required together with PLL1 for stem-cell maintenance through the regulation of WUS.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component nucleus|GO:0005634||NAS  go_process regulation of meristem organization|GO:0009934|10725242|IGI  go_process maintenance of meristem identity|GO:0010074|17079273|IGI  go_process regulation of transcription|GO:0045449|17079273|IGI  go_function protein serine/threonine phosphatase activity|GO:0004722|12573213|IDA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product POL (poltergeist); protein serine/threonine phosphatase  note poltergeist (POL); FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: regulation of meristem organization, N-terminal protein myristoylation, maintenance of meristem identity, regulation of transcription; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: PLL1 (POLTERGEIST LIKE 1); catalytic/ protein serine/threonine phosphatase (TAIR:AT2G35350.1); Has 1241 Blast hits to 1164 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 307; Fungi - 189; Plants - 548; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink).  protein_id AT2G46920.1p  transcript_id AT2G46920.1  protein_id AT2G46920.1p  transcript_id AT2G46920.1  
At2g46920	chr2:019278882	0.0	C/19278882-19280921,19278677-19278790,19278343-19278607,19278106-19278257	AT2G46920.2  CDS  gene_syn F14M4.25, POL, poltergeist  gene POL  function Pol mutations are recessive, partial suppressors of meristem defects in strong clv1 and clv3 mutants, and nearly complete suppressors of weak clv1 mutants. Single mutants appear normal. Acts downstream of the CLV signaling pathway in meristem development and is required together with PLL1 for stem-cell maintenance through the regulation of WUS.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component nucleus|GO:0005634||NAS  go_process regulation of meristem organization|GO:0009934|10725242|IGI  go_process maintenance of meristem identity|GO:0010074|17079273|IGI  go_process regulation of transcription|GO:0045449|17079273|IGI  go_function protein serine/threonine phosphatase activity|GO:0004722|12573213|IDA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product POL (poltergeist); protein serine/threonine phosphatase  note poltergeist (POL); FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: regulation of meristem organization, maintenance of meristem identity, regulation of transcription; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: PLL1 (POLTERGEIST LIKE 1); catalytic/ protein serine/threonine phosphatase (TAIR:AT2G35350.1); Has 1241 Blast hits to 1164 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 307; Fungi - 189; Plants - 548; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink).  protein_id AT2G46920.2p  transcript_id AT2G46920.2  protein_id AT2G46920.2p  transcript_id AT2G46920.2  
At2g46930	chr2:019283625	0.0	W/19283625-19283823,19284076-19284158,19284257-19284386,19284477-19284550,19284645-19284731,19284815-19284939,19285043-19285103,19285190-19285243,19285344-19285421,19285555-19285660,19285745-19285890,19285983-19286090	AT2G46930.1  CDS  gene_syn F14M4.24  go_component endomembrane system|GO:0012505||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product pectinacetylesterase, putative  note pectinacetylesterase, putative; FUNCTIONS IN: carboxylesterase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinacetylesterase (InterPro:IPR004963); BEST Arabidopsis thaliana protein match is: pectinacetylesterase family protein (TAIR:AT3G62060.1); Has 401 Blast hits to 395 proteins in 78 species: Archae - 0; Bacteria - 40; Metazoa - 115; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT2G46930.1p  transcript_id AT2G46930.1  protein_id AT2G46930.1p  transcript_id AT2G46930.1  
At2g46940	chr2:019286824	0.0	C/19286824-19287505,19286658-19286734	AT2G46940.1  CDS  gene_syn F14M4.23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root, carpel; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62070.1); Has 26 Blast hits to 26 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G46940.1p  transcript_id AT2G46940.1  protein_id AT2G46940.1p  transcript_id AT2G46940.1  
At2g46950	chr2:019291094	0.0	C/19291094-19291541,19290765-19290988,19290434-19290681,19289979-19290345,19289466-19289897	AT2G46950.1  CDS  gene_syn CYP709B2, F14M4.22  gene CYP709B2  function member of CYP709B  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP709B2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP709B2; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP709B1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT2G46960.2); Has 24488 Blast hits to 24425 proteins in 1302 species: Archae - 51; Bacteria - 3916; Metazoa - 10103; Fungi - 4010; Plants - 4813; Viruses - 3; Other Eukaryotes - 1592 (source: NCBI BLink).  protein_id AT2G46950.1p  transcript_id AT2G46950.1  protein_id AT2G46950.1p  transcript_id AT2G46950.1  
At2g46960	chr2:019293610	0.0	C/19293610-19293765,19293257-19293513,19292808-19293171,19292295-19292729	AT2G46960.1  CDS  gene_syn CYP709B1, F14M4.21  gene CYP709B1  function member of CYP709B  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP709B1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP709B1; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; EXPRESSED IN: embryo; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP709B2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT2G46950.1); Has 22943 Blast hits to 22894 proteins in 1238 species: Archae - 51; Bacteria - 3267; Metazoa - 9904; Fungi - 3699; Plants - 4715; Viruses - 3; Other Eukaryotes - 1304 (source: NCBI BLink).  protein_id AT2G46960.1p  transcript_id AT2G46960.1  protein_id AT2G46960.1p  transcript_id AT2G46960.1  
At2g46960	chr2:019293936	0.0	C/19293936-19294212,19293610-19293836,19293257-19293513,19292808-19293171,19292295-19292729	AT2G46960.2  CDS  gene_syn CYP709B1, F14M4.21  gene CYP709B1  function member of CYP709B  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP709B1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP709B1; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: embryo; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP709B2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT2G46950.1); Has 23104 Blast hits to 23040 proteins in 1238 species: Archae - 51; Bacteria - 3278; Metazoa - 9978; Fungi - 3736; Plants - 4734; Viruses - 3; Other Eukaryotes - 1324 (source: NCBI BLink).  protein_id AT2G46960.2p  transcript_id AT2G46960.2  protein_id AT2G46960.2p  transcript_id AT2G46960.2  
At2g46970	chr2:019297605	0.0	C/19297605-19297678,19296896-19297430,19296707-19296814,19296553-19296618,19296382-19296447,19295617-19296018	AT2G46970.1  CDS  gene_syn F14M4.20, PHYTOCHROME INTERACTING FACTOR 3-LIKE 1, PIL1  gene PIL1  function encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family.  go_component nucleus|GO:0005634||IEA  go_process shade avoidance|GO:0009641|16565297|IEP  go_process red or far red light signaling pathway|GO:0010017|16891401|IMP  go_process red or far red light signaling pathway|GO:0010017|17965713|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700|12826627|ISS  product PIL1 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 1); transcription factor  note PHYTOCHROME INTERACTING FACTOR 3-LIKE 1 (PIL1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: red or far red light signaling pathway, shade avoidance, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: PIL2 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 2); protein binding / transcription factor (TAIR:AT3G62090.2); Has 1532 Blast hits to 1532 proteins in 144 species: Archae - 0; Bacteria - 3; Metazoa - 103; Fungi - 34; Plants - 1347; Viruses - 3; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT2G46970.1p  transcript_id AT2G46970.1  protein_id AT2G46970.1p  transcript_id AT2G46970.1  
At2g46980	chr2:019301879	0.0	C/19301879-19303429	AT2G46980.1  CDS  gene_syn F14M4.19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1041 Blast hits to 832 proteins in 129 species: Archae - 0; Bacteria - 27; Metazoa - 601; Fungi - 64; Plants - 27; Viruses - 14; Other Eukaryotes - 308 (source: NCBI BLink).  protein_id AT2G46980.1p  transcript_id AT2G46980.1  protein_id AT2G46980.1p  transcript_id AT2G46980.1  
At2g46980	chr2:019301897	0.0	C/19301897-19303429,19301651-19301798,19301415-19301546,19301267-19301336,19301035-19301184,19300903-19300961,19300296-19300430,19300026-19300117,19299868-19299930	AT2G46980.2  CDS  gene_syn F14M4.19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 3514 Blast hits to 2855 proteins in 281 species: Archae - 19; Bacteria - 125; Metazoa - 2021; Fungi - 274; Plants - 81; Viruses - 22; Other Eukaryotes - 972 (source: NCBI BLink).  protein_id AT2G46980.2p  transcript_id AT2G46980.2  protein_id AT2G46980.2p  transcript_id AT2G46980.2  
At2g46990	chr2:019307861	0.0	W/19307861-19308233,19308604-19308700,19308812-19308869	AT2G46990.1  CDS  gene_syn F14M4.18, IAA20, INDOLE-3-ACETIC ACID INDUCIBLE 20  gene IAA20  function Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA20 lacks the conserved degron (domain II) found in many family members, and IAA20 fusion proteins are stable in Arabidopsis seedlings. IAA20 transcripts are induced by auxin treatment, and overexpression of IAA20 leads to defects in gravitropism, root development, root meristem maintenance, etiolation, and cotyledon vascular development.  go_component nucleus|GO:0005634|16489122|IDA  go_process gravitropism|GO:0009630|18298415|IMP  go_process skotomorphogenesis|GO:0009647|18298415|IMP  go_process response to auxin stimulus|GO:0009733|12036262|TAS  go_process response to auxin stimulus|GO:0009733|18298415|IEP  go_process cotyledon vascular tissue pattern formation|GO:0010588|18298415|IMP  go_process root development|GO:0048364|18298415|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product IAA20 (INDOLE-3-ACETIC ACID INDUCIBLE 20); transcription factor  note INDOLE-3-ACETIC ACID INDUCIBLE 20 (IAA20); FUNCTIONS IN: transcription factor activity; INVOLVED IN: cotyledon vascular tissue pattern formation, response to auxin stimulus, gravitropism, root development, skotomorphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA30 (INDOLE-3-ACETIC ACID INDUCIBLE 30); transcription factor (TAIR:AT3G62100.1); Has 1005 Blast hits to 1005 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1004; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G46990.1p  transcript_id AT2G46990.1  protein_id AT2G46990.1p  transcript_id AT2G46990.1  
At2g46995	chr2:019309468	0.0	C/19309468-19309584	AT2G46995.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT2G46995.1p  transcript_id AT2G46995.1  protein_id AT2G46995.1p  transcript_id AT2G46995.1  
At2g47000	chr2:019314439	0.0	C/19314439-19314750,19314297-19314351,19314024-19314199,19313724-19313945,19313407-19313645,19312522-19313321,19311571-19312448,19311183-19311449,19310834-19311097,19310457-19310750,19310008-19310361	AT2G47000.1  CDS  gene_syn ABCB4, ATP BINDING CASSETTE SUBFAMILY B4, F14M4.17, MDR4, MULTIDRUG RESISTANCE 4, P-GLYCOPROTEIN 4, PGP4  gene ABCB4  function Multidrug resistance P-glycoprotein (MDR/PGP) subfamily of ABC transporters. Functions in the basipetal redirection of auxin from the root tip. Exhibits apolar plasma membrane localization in the root cap and polar localization in tissues above.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component membrane|GO:0016020|16243904|IDA  go_process gravitropism|GO:0009630|17557805|IMP  go_process response to auxin stimulus|GO:0009733|16243904|IEP  go_process response to cytokinin stimulus|GO:0009735|16243904|IEP  go_process auxin polar transport|GO:0009926|16243904|TAS  go_process auxin efflux|GO:0010315|18156217|IMP  go_process basipetal auxin transport|GO:0010540|17557805|IMP  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_process root hair elongation|GO:0048767|18156217|IMP  go_function xenobiotic-transporting ATPase activity|GO:0008559|16243904|IDA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ABCB4 (ATP BINDING CASSETTE SUBFAMILY B4); ATPase, coupled to transmembrane movement of substances / xenobiotic-transporting ATPase  note ATP BINDING CASSETTE SUBFAMILY B4 (ABCB4); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, xenobiotic-transporting ATPase activity; INVOLVED IN: in 8 processes; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PGP21 (P-GLYCOPROTEIN 21); ATPase, coupled to transmembrane movement of substances (TAIR:AT3G62150.1); Has 498416 Blast hits to 232703 proteins in 2677 species: Archae - 8839; Bacteria - 334469; Metazoa - 15411; Fungi - 8485; Plants - 4869; Viruses - 43; Other Eukaryotes - 126300 (source: NCBI BLink).  protein_id AT2G47000.1p  transcript_id AT2G47000.1  protein_id AT2G47000.1p  transcript_id AT2G47000.1  
At2g47010	chr2:019317505	0.0	W/19317505-19317754,19317818-19318410,19318527-19319042,19319130-19319252	AT2G47010.1  CDS  gene_syn F14M4.16  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17030.1); Has 30 Blast hits to 30 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G47010.1p  transcript_id AT2G47010.1  protein_id AT2G47010.1p  transcript_id AT2G47010.1  
At2g47010	chr2:019317505	0.0	W/19317505-19317754,19317818-19318410,19318527-19319042,19319130-19319252	AT2G47010.2  CDS  gene_syn F14M4.16  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17030.1); Has 30 Blast hits to 30 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G47010.2p  transcript_id AT2G47010.2  protein_id AT2G47010.2p  transcript_id AT2G47010.2  
At2g47015	chr2:019319780	0.0	W/19319780-19321026	AT2G47015.1  miRNA  gene_syn MICRORNA408, MIR408  gene MIR408  function Encodes a microRNA that targets both a Laccase and Plantacyanin-like family member. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: AUGCACUGCCUCUUCCCUGGC  product MIR408 (MICRORNA408); miRNA  transcript_id AT2G47015.1  
At2g47020	chr2:019321974	0.0	C/19321974-19322002,19321772-19321874,19321513-19321696,19321355-19321403,19321184-19321262,19321019-19321093,19320848-19320925,19320542-19320700,19320439-19320453	AT2G47020.2  CDS  gene_syn F14M4.15  go_component cytoplasm|GO:0005737||IEA  go_process translational termination|GO:0006415||IEA  go_function translation release factor activity|GO:0003747||IEA  go_function translation release factor activity, codon specific|GO:0016149||IEA  go_process translational termination|GO:0006415||ISS  go_function translation release factor activity|GO:0003747||ISS  product peptide chain release factor, putative  note peptide chain release factor, putative; FUNCTIONS IN: translation release factor activity, codon specific, translation release factor activity; INVOLVED IN: translational termination; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Class I peptide chain release factor (InterPro:IPR000352), Peptide chain release factor (InterPro:IPR005139); BEST Arabidopsis thaliana protein match is: APG3 (ALBINO AND PALE GREEN); translation release factor/ translation release factor, codon specific (TAIR:AT3G62910.1); Has 11075 Blast hits to 11073 proteins in 1564 species: Archae - 0; Bacteria - 5433; Metazoa - 157; Fungi - 119; Plants - 92; Viruses - 10; Other Eukaryotes - 5264 (source: NCBI BLink).  protein_id AT2G47020.2p  transcript_id AT2G47020.2  protein_id AT2G47020.2p  transcript_id AT2G47020.2  
At2g47020	chr2:019322153	0.0	C/19322153-19322279,19321974-19322074,19321772-19321870,19321513-19321696,19321355-19321403,19321184-19321262,19321019-19321093,19320848-19320925,19320542-19320700,19320363-19320458,19320090-19320284	AT2G47020.1  CDS  gene_syn F14M4.15  go_component cytoplasm|GO:0005737||IEA  go_component mitochondrion|GO:0005739||IEA  go_process translational termination|GO:0006415||IEA  go_function translation release factor activity|GO:0003747||IEA  go_function translation release factor activity, codon specific|GO:0016149||IEA  go_process translational termination|GO:0006415||ISS  go_function translation release factor activity|GO:0003747||ISS  product peptide chain release factor, putative  note peptide chain release factor, putative; FUNCTIONS IN: translation release factor activity, codon specific, translation release factor activity; INVOLVED IN: translational termination; LOCATED IN: mitochondrion, cytoplasm; CONTAINS InterPro DOMAIN/s: Peptide chain release factor 1 (InterPro:IPR004373), Class I peptide chain release factor (InterPro:IPR000352), Peptide chain release factor (InterPro:IPR005139); BEST Arabidopsis thaliana protein match is: APG3 (ALBINO AND PALE GREEN); translation release factor/ translation release factor, codon specific (TAIR:AT3G62910.1); Has 11779 Blast hits to 11777 proteins in 1568 species: Archae - 0; Bacteria - 5492; Metazoa - 195; Fungi - 146; Plants - 102; Viruses - 11; Other Eukaryotes - 5833 (source: NCBI BLink).  protein_id AT2G47020.1p  transcript_id AT2G47020.1  protein_id AT2G47020.1p  transcript_id AT2G47020.1  
At2g47030	chr2:019325191	0.0	C/19325191-19326268,19324415-19325103	AT2G47030.1  CDS  gene_syn F14M4.14, VGDH1  gene VGDH1  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product VGDH1; enzyme inhibitor/ pectinesterase  note VGDH1; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: male gametophyte, flower, pollen tube; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: VGD1 (VANGUARD1); enzyme inhibitor/ pectinesterase (TAIR:AT2G47040.1); Has 1439 Blast hits to 1399 proteins in 267 species: Archae - 0; Bacteria - 422; Metazoa - 1; Fungi - 130; Plants - 885; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G47030.1p  transcript_id AT2G47030.1  protein_id AT2G47030.1p  transcript_id AT2G47030.1  
At2g47040	chr2:019328962	0.0	C/19328962-19330060,19328186-19328874	AT2G47040.1  CDS  gene_syn F14M4.13, VANGUARD1, VGD1  gene VGD1  function Share high homologies with a group of pectin methylesterases (PME), pollen specific, and is required for enhancing the growth of pollen tube in style and transmitting tract tissues.  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_process pollen tube growth|GO:0009860|15659637|TAS  go_function pectinesterase activity|GO:0030599||ISS  product VGD1 (VANGUARD1); enzyme inhibitor/ pectinesterase  note VANGUARD1 (VGD1); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: pollen tube growth; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, A vegetative growth; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: VGDH1; enzyme inhibitor/ pectinesterase (TAIR:AT2G47030.1); Has 1441 Blast hits to 1397 proteins in 266 species: Archae - 0; Bacteria - 420; Metazoa - 1; Fungi - 132; Plants - 887; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G47040.1p  transcript_id AT2G47040.1  protein_id AT2G47040.1p  transcript_id AT2G47040.1  
At2g47050	chr2:019331927	0.0	C/19331927-19332577	AT2G47050.1  CDS  gene_syn F14M4.12  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT3G62180.1); Has 58 Blast hits to 57 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G47050.1p  transcript_id AT2G47050.1  protein_id AT2G47050.1p  transcript_id AT2G47050.1  
At2g47060	chr2:019334326	0.0	C/19334326-19334393,19334102-19334211,19333737-19334010,19333523-19333655,19333341-19333427,19333116-19333244	AT2G47060.3  CDS  gene_syn F14M4.11  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product serine/threonine protein kinase, putative  note serine/threonine protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase, putative (TAIR:AT3G62220.1); Has 74433 Blast hits to 73666 proteins in 3040 species: Archae - 46; Bacteria - 7126; Metazoa - 32882; Fungi - 5202; Plants - 16825; Viruses - 300; Other Eukaryotes - 12052 (source: NCBI BLink).  protein_id AT2G47060.3p  transcript_id AT2G47060.3  protein_id AT2G47060.3p  transcript_id AT2G47060.3  
At2g47060	chr2:019334666	0.0	C/19334666-19334759,19334326-19334579,19334102-19334228,19333737-19334010,19333523-19333655,19333116-19333427	AT2G47060.4  CDS  gene_syn F14M4.11  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product serine/threonine protein kinase, putative  note serine/threonine protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase, putative (TAIR:AT3G62220.1); Has 80619 Blast hits to 79720 proteins in 3178 species: Archae - 48; Bacteria - 7478; Metazoa - 35837; Fungi - 5878; Plants - 17627; Viruses - 326; Other Eukaryotes - 13425 (source: NCBI BLink).  protein_id AT2G47060.4p  transcript_id AT2G47060.4  protein_id AT2G47060.4p  transcript_id AT2G47060.4  
At2g47060	chr2:019334666	0.0	C/19334666-19334759,19334326-19334579,19334102-19334228,19333737-19334010,19333523-19333655,19333341-19333427,19333116-19333244	AT2G47060.1  CDS  gene_syn F14M4.11  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product serine/threonine protein kinase, putative  note serine/threonine protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase, putative (TAIR:AT3G62220.1); Has 80905 Blast hits to 79966 proteins in 3182 species: Archae - 48; Bacteria - 7503; Metazoa - 35897; Fungi - 5885; Plants - 17789; Viruses - 326; Other Eukaryotes - 13457 (source: NCBI BLink).  protein_id AT2G47060.1p  transcript_id AT2G47060.1  protein_id AT2G47060.1p  transcript_id AT2G47060.1  
At2g47060	chr2:019334666	0.0	C/19334666-19334759,19334326-19334579,19334102-19334228,19333737-19334010,19333523-19333655,19333341-19333427,19333116-19333244	AT2G47060.2  CDS  gene_syn F14M4.11  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product serine/threonine protein kinase, putative  note serine/threonine protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase, putative (TAIR:AT3G62220.1); Has 80905 Blast hits to 79966 proteins in 3182 species: Archae - 48; Bacteria - 7503; Metazoa - 35897; Fungi - 5885; Plants - 17789; Viruses - 326; Other Eukaryotes - 13457 (source: NCBI BLink).  protein_id AT2G47060.2p  transcript_id AT2G47060.2  protein_id AT2G47060.2p  transcript_id AT2G47060.2  
At2g47070	chr2:019337144	0.0	W/19337144-19337598,19337674-19337852,19337929-19338368,19338471-19338545,19338628-19338735,19338822-19338939,19339017-19339158,19339255-19339411,19339500-19340045,19340127-19340552	AT2G47070.1  CDS  gene_syn F14M4.10, SPL1, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 1  gene SPL1  function member of SPL gene family, encodes DNA binding proteins and putative transcription factors. All have the SBP-box, which encodes the SBP-domain, required for and sufficient for interaction with DNA.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product SPL1 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 1); DNA binding / transcription factor  note SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 1 (SPL1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: SPL12 (squamosa promoter-binding protein-like 12); transcription factor (TAIR:AT3G60030.1); Has 590 Blast hits to 559 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 581; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT2G47070.1p  transcript_id AT2G47070.1  protein_id AT2G47070.1p  transcript_id AT2G47070.1  
At2g47090	chr2:019344130	0.0	C/19344130-19344297,19343680-19343988,19343386-19343594,19343256-19343304,19343096-19343185,19342951-19343013,19341444-19342856	AT2G47090.1  CDS  gene_syn F14M4.8  go_component intracellular|GO:0005622||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function nucleic acid binding|GO:0003676||ISS  product nucleic acid binding / protein binding / zinc ion binding  note nucleic acid binding / protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT3G62240.1); Has 6659 Blast hits to 1471 proteins in 272 species: Archae - 0; Bacteria - 928; Metazoa - 1250; Fungi - 334; Plants - 64; Viruses - 26; Other Eukaryotes - 4057 (source: NCBI BLink).  protein_id AT2G47090.1p  transcript_id AT2G47090.1  protein_id AT2G47090.1p  transcript_id AT2G47090.1  
At2g47100	chr2:019344427	0.0	W/19344427-19344499	AT2G47100.1  tRNA  gene_syn 35906.TRNA-ALA-1  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: TGC)  transcript_id AT2G47100.1  
At2g47110	chr2:019344701	0.0	W/19344701-19345174	AT2G47110.1  CDS  gene_syn F14M4.6, UBQ6  gene UBQ6  function polyubiquitin gene  go_component intracellular|GO:0005622||TAS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|2165066|ISS  go_process protein ubiquitination during ubiquitin-dependent protein catabolic process|GO:0042787|2165066|ISS  go_function protein binding|GO:0005515|8382544|ISS  go_function protein binding|GO:0005515||ISS  product UBQ6; protein binding  note UBQ6; FUNCTIONS IN: protein binding; INVOLVED IN: protein ubiquitination during ubiquitin-dependent protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: cytosolic small ribosomal subunit, intracellular; EXPRESSED IN: whole plant, male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein S27a (InterPro:IPR002906), Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: UBQ5 (ubiquitin 5); protein binding / structural constituent of ribosome (TAIR:AT3G62250.1); Has 9344 Blast hits to 5596 proteins in 654 species: Archae - 78; Bacteria - 7; Metazoa - 4228; Fungi - 946; Plants - 1981; Viruses - 176; Other Eukaryotes - 1928 (source: NCBI BLink).  protein_id AT2G47110.1p  transcript_id AT2G47110.1  protein_id AT2G47110.1p  transcript_id AT2G47110.1  
At2g47115	chr2:019346554	0.0	C/19346554-19346864,19346428-19346461,19346206-19346355,19346031-19346120,19345886-19345951,19345717-19345808,19345584-19345631,19345376-19345487	AT2G47115.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10660.4); Has 91 Blast hits to 91 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 2; Plants - 77; Viruses - 3; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G47115.1p  transcript_id AT2G47115.1  protein_id AT2G47115.1p  transcript_id AT2G47115.1  
At2g47120	chr2:019348210	0.0	C/19348210-19348223,19347359-19348121	AT2G47120.1  CDS  gene_syn F14M4.5  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT2G47130.1); Has 80311 Blast hits to 80158 proteins in 2201 species: Archae - 468; Bacteria - 43770; Metazoa - 4463; Fungi - 4181; Plants - 1494; Viruses - 4; Other Eukaryotes - 25931 (source: NCBI BLink).  protein_id AT2G47120.1p  transcript_id AT2G47120.1  protein_id AT2G47120.1p  transcript_id AT2G47120.1  
At2g47130	chr2:019350468	0.0	C/19350468-19350481,19349627-19350386	AT2G47130.1  CDS  gene_syn F14M4.4  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT3G29260.1); Has 83240 Blast hits to 83085 proteins in 2219 species: Archae - 467; Bacteria - 45059; Metazoa - 4765; Fungi - 4425; Plants - 1552; Viruses - 5; Other Eukaryotes - 26967 (source: NCBI BLink).  protein_id AT2G47130.1p  transcript_id AT2G47130.1  protein_id AT2G47130.1p  transcript_id AT2G47130.1  
At2g47140	chr2:019352046	0.0	C/19352046-19352059,19351500-19351952,19350970-19351276	AT2G47140.1  CDS  gene_syn F14M4.3  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.12 twelve leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT2G47130.1); Has 76445 Blast hits to 76292 proteins in 2196 species: Archae - 450; Bacteria - 42132; Metazoa - 4318; Fungi - 4086; Plants - 1501; Viruses - 5; Other Eukaryotes - 23953 (source: NCBI BLink).  protein_id AT2G47140.1p  transcript_id AT2G47140.1  protein_id AT2G47140.1p  transcript_id AT2G47140.1  
At2g47150	chr2:019352924	0.0	C/19352924-19353114,19352614-19352838,19352324-19352510	AT2G47150.1  CDS  gene_syn F14M4.2  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT2G47130.1); Has 11633 Blast hits to 11624 proteins in 1248 species: Archae - 95; Bacteria - 8243; Metazoa - 446; Fungi - 475; Plants - 440; Viruses - 0; Other Eukaryotes - 1934 (source: NCBI BLink).  protein_id AT2G47150.1p  transcript_id AT2G47150.1  protein_id AT2G47150.1p  transcript_id AT2G47150.1  
At2g47160	chr2:019360684	0.0	C/19360684-19360787,19360258-19360608,19360045-19360183,19359799-19359964,19359507-19359673,19359242-19359415,19359063-19359158,19358856-19358987,19358457-19358776,19358102-19358369,19357740-19358012	AT2G47160.2  CDS  gene_syn BOR1, REQUIRES HIGH BORON 1, T3D7.3  gene BOR1  function Boron transporter. Protein accumulates in shoots and roots under conditions of boron deficiency and is degraded within several hours of restoring boron supply. Localized to the plasma membrane under B limitation, and to the cytoplasm after B application before degradation. Protein is transferred via the endosomes to the vacuole for degradation.  go_component cytoplasm|GO:0005737|16103374|IDA  go_component endosome|GO:0005768|16103374|IDA  go_component plasma membrane|GO:0005886|12447444|IDA  go_process boron transport|GO:0046713|9390427|IMP  go_function anion exchanger activity|GO:0015380||ISS  go_function boron transporter activity|GO:0046715|12447444|IGI  go_function boron efflux transmembrane transporter activity|GO:0080139|12447444|IGI  product BOR1 (REQUIRES HIGH BORON 1); anion exchanger/ boron transporter  note REQUIRES HIGH BORON 1 (BOR1); FUNCTIONS IN: boron transporter activity, boron efflux transmembrane transporter activity, anion exchanger activity; INVOLVED IN: boron transport; LOCATED IN: endosome, plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, eukaryotic (InterPro:IPR003020), Bicarbonate transporter, C-terminal (InterPro:IPR011531); BEST Arabidopsis thaliana protein match is: anion exchange family protein (TAIR:AT3G62270.1); Has 2060 Blast hits to 1067 proteins in 140 species: Archae - 0; Bacteria - 4; Metazoa - 1701; Fungi - 206; Plants - 99; Viruses - 2; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT2G47160.2p  transcript_id AT2G47160.2  protein_id AT2G47160.2p  transcript_id AT2G47160.2  
At2g47160	chr2:019360684	0.0	C/19360684-19360787,19360526-19360608,19360258-19360450,19360045-19360183,19359799-19359964,19359507-19359673,19359242-19359415,19359063-19359158,19358856-19358987,19358457-19358776,19358102-19358369,19357740-19358012	AT2G47160.1  CDS  gene_syn BOR1, REQUIRES HIGH BORON 1, T3D7.3  gene BOR1  function Boron transporter. Protein accumulates in shoots and roots under conditions of boron deficiency and is degraded within several hours of restoring boron supply. Localized to the plasma membrane under B limitation, and to the cytoplasm after B application before degradation. Protein is transferred via the endosomes to the vacuole for degradation.  go_component cytoplasm|GO:0005737|16103374|IDA  go_component endosome|GO:0005768|16103374|IDA  go_component plasma membrane|GO:0005886|12447444|IDA  go_process boron transport|GO:0046713|9390427|IMP  go_function anion exchanger activity|GO:0015380||ISS  go_function boron transporter activity|GO:0046715|12447444|IGI  go_function boron efflux transmembrane transporter activity|GO:0080139|12447444|IGI  product BOR1 (REQUIRES HIGH BORON 1); anion exchanger/ boron transporter  note REQUIRES HIGH BORON 1 (BOR1); FUNCTIONS IN: boron transporter activity, boron efflux transmembrane transporter activity, anion exchanger activity; INVOLVED IN: boron transport; LOCATED IN: endosome, plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, C-terminal (InterPro:IPR011531), Bicarbonate transporter, eukaryotic (InterPro:IPR003020); BEST Arabidopsis thaliana protein match is: anion exchange family protein (TAIR:AT3G62270.1); Has 2065 Blast hits to 1071 proteins in 141 species: Archae - 0; Bacteria - 6; Metazoa - 1702; Fungi - 208; Plants - 99; Viruses - 2; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT2G47160.1p  transcript_id AT2G47160.1  protein_id AT2G47160.1p  transcript_id AT2G47160.1  
At2g47170	chr2:019367264	0.0	W/19367264-19367411,19367531-19367601,19367919-19368038,19368130-19368248,19368340-19368421,19368513-19368518	AT2G47170.1  CDS  gene_syn ADP-RIBOSYLATION FACTOR, ARF1A1C, T8I13.1  gene ARF1A1C  function Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. Members of this family are known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.  go_component Golgi-associated vesicle|GO:0005798||IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function protein binding|GO:0005515|15723828|TAS  go_function GTP binding|GO:0005525|15723828|ISS  go_function GTP binding|GO:0005525|15723828|TAS  go_function phospholipase activator activity|GO:0016004|15723828|TAS  product ARF1A1C; GTP binding / phospholipase activator/ protein binding  note ARF1A1C; FUNCTIONS IN: protein binding, phospholipase activator activity, GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: Golgi-associated vesicle; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ATARFA1E (ADP-ribosylation factor A1E); GTP binding / phospholipase activator/ protein binding (TAIR:AT3G62290.1); Has 12055 Blast hits to 12038 proteins in 420 species: Archae - 12; Bacteria - 43; Metazoa - 6623; Fungi - 1333; Plants - 1251; Viruses - 3; Other Eukaryotes - 2790 (source: NCBI BLink).  protein_id AT2G47170.1p  transcript_id AT2G47170.1  protein_id AT2G47170.1p  transcript_id AT2G47170.1  
At2g47180	chr2:019370025	0.0	C/19370025-19370372,19369584-19369907,19369362-19369496,19369049-19369276	AT2G47180.1  CDS  gene_syn Arabidopsis thaliana galactinol synthase 1, AtGolS1, T8I13.2  gene AtGolS1  go_function transferase activity, transferring glycosyl groups|GO:0016757||IEA  go_component cellular_component|GO:0005575||ND  go_process response to heat|GO:0009408|17059409|IEP  go_process response to high light intensity|GO:0009644|17059409|IEP  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_process response to hydrogen peroxide|GO:0042542|17059409|IEP  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product AtGolS1 (Arabidopsis thaliana galactinol synthase 1); transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note Arabidopsis thaliana galactinol synthase 1 (AtGolS1); FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: response to high light intensity, response to hydrogen peroxide, carbohydrate biosynthetic process, response to heat; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: AtGolS2 (Arabidopsis thaliana galactinol synthase 2); transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT1G56600.1); Has 818 Blast hits to 817 proteins in 194 species: Archae - 0; Bacteria - 56; Metazoa - 224; Fungi - 185; Plants - 235; Viruses - 68; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT2G47180.1p  transcript_id AT2G47180.1  protein_id AT2G47180.1p  transcript_id AT2G47180.1  
At2g47190	chr2:019376284	0.0	W/19376284-19376440,19376532-19376661,19376763-19377297	AT2G47190.1  CDS  gene_syn ATMYB2, MYB DOMAIN PROTEIN 2, MYB2, T8I13.3  gene MYB2  function Encodes a MYB transcription factor that possesses an R2R3 MYB DNA binding domain and is known to regulate the expression of salt- and dehydration-responsive genes. Has been shown to bind calmodulin.  go_component nucleus|GO:0005634|14617066|IDA  go_process response to water deprivation|GO:0009414|8312738|IEP  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to salt stress|GO:0009651|8312738|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|12509522|IMP  go_process response to abscisic acid stimulus|GO:0009737|16258012|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677|8312738|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function calmodulin binding|GO:0005516|15569682|IDA  go_function transcription activator activity|GO:0016563|9011094|IEP  product MYB2 (MYB DOMAIN PROTEIN 2); DNA binding / calmodulin binding / transcription activator/ transcription factor  note MYB DOMAIN PROTEIN 2 (MYB2); FUNCTIONS IN: transcription factor activity, calmodulin binding, transcription activator activity, DNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: AtMYB78 (myb domain protein 78); DNA binding / transcription factor (TAIR:AT5G49620.1); Has 6187 Blast hits to 5754 proteins in 351 species: Archae - 0; Bacteria - 0; Metazoa - 607; Fungi - 288; Plants - 3719; Viruses - 4; Other Eukaryotes - 1569 (source: NCBI BLink).  protein_id AT2G47190.1p  transcript_id AT2G47190.1  protein_id AT2G47190.1p  transcript_id AT2G47190.1  
At2g47200	chr2:019377884	0.0	C/19377884-19378150	AT2G47200.1  CDS  gene_syn T8I13.4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G47200.1p  transcript_id AT2G47200.1  protein_id AT2G47200.1p  transcript_id AT2G47200.1  
At2g47210	chr2:019379039	0.0	W/19379039-19379161,19379247-19379324,19379457-19379522,19379620-19379679,19379815-19379871,19380003-19380132,19380278-19380345,19380492-19380584,19380678-19380725,19380863-19381039,19381133-19381243,19381506-19381601,19381703-19381774,19381859-19381895,19381980-19382014,19382130-19382204	AT2G47210.1  CDS  gene_syn T8I13.5  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function DNA binding|GO:0003677||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: N-terminal protein myristoylation, regulation of transcription, DNA-dependent; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778); Has 282 Blast hits to 280 proteins in 137 species: Archae - 0; Bacteria - 2; Metazoa - 124; Fungi - 96; Plants - 21; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT2G47210.1p  transcript_id AT2G47210.1  protein_id AT2G47210.1p  transcript_id AT2G47210.1  
At2g47220	chr2:019384059	0.0	W/19384059-19384148,19384354-19384422,19384570-19384676,19384767-19384809,19384893-19385066,19385208-19385283,19385372-19385510,19385611-19385675,19385826-19386472	AT2G47220.1  CDS  gene_syn T8I13.6  go_process RNA processing|GO:0006396||IEA  go_process metabolic process|GO:0008152||IEA  go_function 3 -5 -exoribonuclease activity|GO:0000175||IEA  go_function RNA binding|GO:0003723||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process RNA processing|GO:0006396||ISS  go_function 3 -5 -exoribonuclease activity|GO:0000175||ISS  go_function RNA binding|GO:0003723||ISS  product 3  exoribonuclease family domain 1 protein-related  note 3  exoribonuclease family domain 1 protein-related; FUNCTIONS IN: 3 -5 -exoribonuclease activity, oxidoreductase activity, RNA binding; INVOLVED IN: metabolic process, RNA processing; EXPRESSED IN: shoot; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Protein of unknown function DUF724 (InterPro:IPR007930), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein (TAIR:AT1G11420.1); Has 5193 Blast hits to 5179 proteins in 1373 species: Archae - 16; Bacteria - 2754; Metazoa - 159; Fungi - 9; Plants - 183; Viruses - 1; Other Eukaryotes - 2071 (source: NCBI BLink).  protein_id AT2G47220.1p  transcript_id AT2G47220.1  protein_id AT2G47220.1p  transcript_id AT2G47220.1  
At2g47230	chr2:019387126	0.0	W/19387126-19387554,19387796-19388227,19388322-19388486,19388562-19388649,19388726-19388874,19388971-19389052,19389136-19389237,19389353-19390011	AT2G47230.1  CDS  gene_syn T8I13.7  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product agenet domain-containing protein  note agenet domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein (TAIR:AT1G26540.1); Has 455 Blast hits to 408 proteins in 92 species: Archae - 0; Bacteria - 14; Metazoa - 142; Fungi - 30; Plants - 188; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).  protein_id AT2G47230.1p  transcript_id AT2G47230.1  protein_id AT2G47230.1p  transcript_id AT2G47230.1  
At2g47240	chr2:019393835	0.0	W/19393835-19393980,19394137-19394200,19394292-19394381,19394468-19394524,19394622-19394670,19394763-19394839,19394969-19395103,19395369-19395536,19395740-19395850,19395931-19396085,19396176-19396251,19396362-19396479,19396571-19396956,19397075-19397257,19397346-19397465,19397569-19397616	AT2G47240.1  CDS  gene_syn T8I13.8  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process fatty acid biosynthetic process|GO:0006633||ISS  go_function long-chain-fatty-acid-CoA ligase activity|GO:0004467||ISS  product long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein  note long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein; FUNCTIONS IN: long-chain-fatty-acid-CoA ligase activity, catalytic activity; INVOLVED IN: fatty acid biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetase (TAIR:AT4G23850.1); Has 36367 Blast hits to 34340 proteins in 2004 species: Archae - 475; Bacteria - 19450; Metazoa - 2158; Fungi - 1253; Plants - 1008; Viruses - 1; Other Eukaryotes - 12022 (source: NCBI BLink).  protein_id AT2G47240.1p  transcript_id AT2G47240.1  protein_id AT2G47240.1p  transcript_id AT2G47240.1  
At2g47240	chr2:019393835	0.0	W/19393835-19393980,19394137-19394200,19394292-19394381,19394468-19394524,19394622-19394670,19394763-19394839,19394969-19395103,19395369-19395536,19395740-19395850,19395931-19396085,19396176-19396251,19396362-19396479,19396571-19396956,19397075-19397257,19397346-19397465,19397569-19397616	AT2G47240.2  CDS  gene_syn T8I13.8  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process fatty acid biosynthetic process|GO:0006633||ISS  go_function long-chain-fatty-acid-CoA ligase activity|GO:0004467||ISS  product long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein  note long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein; FUNCTIONS IN: long-chain-fatty-acid-CoA ligase activity, catalytic activity; INVOLVED IN: fatty acid biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetase (TAIR:AT4G23850.1); Has 36367 Blast hits to 34340 proteins in 2004 species: Archae - 475; Bacteria - 19450; Metazoa - 2158; Fungi - 1253; Plants - 1008; Viruses - 1; Other Eukaryotes - 12022 (source: NCBI BLink).  protein_id AT2G47240.2p  transcript_id AT2G47240.2  protein_id AT2G47240.2p  transcript_id AT2G47240.2  
At2g47250	chr2:019402691	0.0	C/19402691-19402981,19402411-19402613,19401240-19402324,19400691-19400816,19400356-19400594,19400134-19400252,19399923-19400049	AT2G47250.1  CDS  gene_syn T8I13.9  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function RNA helicase activity|GO:0003724||ISS  product RNA helicase, putative  note RNA helicase, putative; FUNCTIONS IN: in 7 functions; LOCATED IN: membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated region (InterPro:IPR007502), ATPase, AAA+ type, core (InterPro:IPR003593), Region of unknown function DUF1605 (InterPro:IPR011709), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase, putative (TAIR:AT3G62310.1); Has 7386 Blast hits to 6689 proteins in 1000 species: Archae - 0; Bacteria - 1927; Metazoa - 2123; Fungi - 842; Plants - 395; Viruses - 601; Other Eukaryotes - 1498 (source: NCBI BLink).  protein_id AT2G47250.1p  transcript_id AT2G47250.1  protein_id AT2G47250.1p  transcript_id AT2G47250.1  
At2g47260	chr2:019406010	0.0	C/19406010-19406446,19405750-19405893,19405045-19405477	AT2G47260.1  CDS  gene_syn ATWRKY23, T8I13.10, WRKY23  gene WRKY23  function member of WRKY Transcription Factor; Group I  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY23; transcription factor  note WRKY23; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY group IIc (InterPro:IPR017396); BEST Arabidopsis thaliana protein match is: WRKY68; transcription factor (TAIR:AT3G62340.1); Has 2051 Blast hits to 1763 proteins in 120 species: Archae - 0; Bacteria - 1; Metazoa - 11; Fungi - 8; Plants - 2017; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT2G47260.1p  transcript_id AT2G47260.1  protein_id AT2G47260.1p  transcript_id AT2G47260.1  
At2g47270	chr2:019411741	0.0	C/19411741-19412049	AT2G47270.1  CDS  gene_syn T8I13.11  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription regulator activity|GO:0030528|12897250|TAS  product transcription factor/ transcription regulator  note transcription factor/ transcription regulator; FUNCTIONS IN: transcription factor activity, transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092); Has 13 Blast hits to 13 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G47270.1p  transcript_id AT2G47270.1  protein_id AT2G47270.1p  transcript_id AT2G47270.1  
At2g47275	chr2:019415052	0.0	W/19415052-19415186	AT2G47275.1  miRNA  gene_syn MICRORNA403, MIR403  gene MIR403  function Encodes a microRNA that targets AGO2 and AGO3. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUAGAUUCACGCACAAACUCG Thought to be dicot specific. It has homologs in 16 dicot species.  product MIR403 (MICRORNA403); miRNA  transcript_id AT2G47275.1  
At2g47280	chr2:019416800	0.0	W/19416800-19417017,19417165-19417324,19417449-19417658,19417743-19417993,19418081-19418252	AT2G47280.1  CDS  gene_syn T8I13.12  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase  note pectinesterase; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT2G19150.1); Has 1189 Blast hits to 1164 proteins in 173 species: Archae - 2; Bacteria - 250; Metazoa - 1; Fungi - 124; Plants - 812; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G47280.1p  transcript_id AT2G47280.1  protein_id AT2G47280.1p  transcript_id AT2G47280.1  
At2g47300	chr2:019418733	0.0	W/19418733-19419184,19419280-19419376,19419477-19419584,19419670-19419900,19420006-19420124,19420221-19420679,19420761-19420869,19420987-19421519,19421611-19421781,19421875-19422076	AT2G47300.2  CDS  go_process tRNA 5 -leader removal|GO:0001682||IEA  go_process RNA processing|GO:0006396||IEA  go_function ribonuclease P activity|GO:0004526||IEA  go_component cellular_component|GO:0005575||ND  product ribonuclease P  note ribonuclease P; FUNCTIONS IN: ribonuclease P activity; INVOLVED IN: tRNA 5 -leader removal, RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, sperm cell, embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: POPLD (InterPro:IPR012590), Ribonuclease P/MRP, POP1 (InterPro:IPR009723); Has 232 Blast hits to 195 proteins in 103 species: Archae - 0; Bacteria - 0; Metazoa - 108; Fungi - 67; Plants - 25; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT2G47300.2p  transcript_id AT2G47300.2  protein_id AT2G47300.2p  transcript_id AT2G47300.2  
At2g47300	chr2:019419333	0.0	W/19419333-19419380,19419477-19419584,19419670-19419900,19420006-19420124,19420221-19420679,19420761-19420869,19420987-19421519,19421611-19421781,19421875-19422076	AT2G47300.3  CDS  go_process RNA processing|GO:0006396||IEA  go_function ribonuclease P activity|GO:0004526||IEA  go_component cellular_component|GO:0005575||ND  product ribonuclease P  note ribonuclease P; FUNCTIONS IN: ribonuclease P activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, sperm cell, embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: POPLD (InterPro:IPR012590); Has 119 Blast hits to 115 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 43; Fungi - 49; Plants - 20; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT2G47300.3p  transcript_id AT2G47300.3  protein_id AT2G47300.3p  transcript_id AT2G47300.3  
At2g47310	chr2:019423791	0.0	W/19423791-19424097,19424193-19424260,19424352-19424430,19424503-19424585,19424674-19424725,19424948-19425033,19425192-19425258,19425521-19425600,19425695-19425759,19425895-19426144,19426266-19426412,19426490-19426678,19426781-19426846	AT2G47310.1  CDS  gene_syn T8I13.15  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function protein binding|GO:0005515||IEA  go_function RNA binding|GO:0003723||ISS  product flowering time control protein-related / FCA gamma-related  note flowering time control protein-related / FCA gamma-related; FUNCTIONS IN: protein binding, RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Ribonucleoprotein, BRUNO-like (InterPro:IPR015903), WW/Rsp5/WWP (InterPro:IPR001202), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: FCA; RNA binding (TAIR:AT4G16280.3); Has 10418 Blast hits to 8333 proteins in 354 species: Archae - 0; Bacteria - 296; Metazoa - 6915; Fungi - 978; Plants - 1327; Viruses - 0; Other Eukaryotes - 902 (source: NCBI BLink).  protein_id AT2G47310.1p  transcript_id AT2G47310.1  protein_id AT2G47310.1p  transcript_id AT2G47310.1  
At2g47320	chr2:019427711	0.0	W/19427711-19427862,19427954-19427993,19428076-19428123,19428214-19428299,19428377-19428505,19428602-19428839	AT2G47320.1  CDS  gene_syn T8I13.16  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||IEA  go_process protein folding|GO:0006457||ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein  note peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein (TAIR:AT3G66654.3); Has 9979 Blast hits to 9975 proteins in 1480 species: Archae - 82; Bacteria - 3510; Metazoa - 2074; Fungi - 872; Plants - 610; Viruses - 0; Other Eukaryotes - 2831 (source: NCBI BLink).  protein_id AT2G47320.1p  transcript_id AT2G47320.1  protein_id AT2G47320.1p  transcript_id AT2G47320.1  
At2g47330	chr2:019431017	0.0	C/19431017-19431617,19429702-19430930,19429219-19429619,19429083-19429134	AT2G47330.1  CDS  gene_syn T8I13.17  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD/DEAH box helicase, putative  note DEAD/DEAH box helicase, putative; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase, putative (TAIR:AT1G20920.2); Has 30895 Blast hits to 30335 proteins in 1763 species: Archae - 496; Bacteria - 13160; Metazoa - 5155; Fungi - 3296; Plants - 1423; Viruses - 11; Other Eukaryotes - 7354 (source: NCBI BLink).  protein_id AT2G47330.1p  transcript_id AT2G47330.1  protein_id AT2G47330.1p  transcript_id AT2G47330.1  
At2g47340	chr2:019432168	0.0	W/19432168-19433016	AT2G47340.1  CDS  gene_syn T8I13.18  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: male gametophyte, sepal, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT1G02550.1); Has 88 Blast hits to 86 proteins in 16 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 4; Plants - 80; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT2G47340.1p  transcript_id AT2G47340.1  protein_id AT2G47340.1p  transcript_id AT2G47340.1  
At2g47350	chr2:019434588	0.0	W/19434588-19435097,19435491-19435986,19436074-19436174,19436268-19436357,19436453-19436577,19436907-19437045	AT2G47350.1  CDS  gene_syn T8I13.19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product PAPA-1-like family protein / zinc finger (HIT type) family protein  note PAPA-1-like family protein / zinc finger (HIT type) family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529), PAPA-1-like conserved region (InterPro:IPR006880); BEST Arabidopsis thaliana protein match is: PAPA-1-like family protein / zinc finger (HIT type) family protein (TAIR:AT1G56460.1); Has 2885 Blast hits to 2186 proteins in 266 species: Archae - 7; Bacteria - 140; Metazoa - 1186; Fungi - 340; Plants - 134; Viruses - 23; Other Eukaryotes - 1055 (source: NCBI BLink).  protein_id AT2G47350.1p  transcript_id AT2G47350.1  protein_id AT2G47350.1p  transcript_id AT2G47350.1  
At2g47350	chr2:019434588	0.0	W/19434588-19435097,19435491-19435986,19436074-19436178,19436268-19436281	AT2G47350.2  CDS  gene_syn T8I13.19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product PAPA-1-like family protein / zinc finger (HIT type) family protein  note PAPA-1-like family protein / zinc finger (HIT type) family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: PAPA-1-like conserved region (InterPro:IPR006880); BEST Arabidopsis thaliana protein match is: PAPA-1-like family protein / zinc finger (HIT type) family protein (TAIR:AT3G06660.1); Has 672 Blast hits to 601 proteins in 133 species: Archae - 2; Bacteria - 24; Metazoa - 268; Fungi - 104; Plants - 60; Viruses - 8; Other Eukaryotes - 206 (source: NCBI BLink).  protein_id AT2G47350.2p  transcript_id AT2G47350.2  protein_id AT2G47350.2p  transcript_id AT2G47350.2  
At2g47360	chr2:019437820	0.0	W/19437820-19438731	AT2G47360.1  CDS  gene_syn T8I13.20  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02570.1); Has 6 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G47360.1p  transcript_id AT2G47360.1  protein_id AT2G47360.1p  transcript_id AT2G47360.1  
At2g47370	chr2:019439840	0.0	C/19439840-19440281,19439401-19439760,19439130-19439320	AT2G47370.1  CDS  gene_syn T8I13.21  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16760.1); Has 60 Blast hits to 60 proteins in 17 species: Archae - 0; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G47370.1p  transcript_id AT2G47370.1  protein_id AT2G47370.1p  transcript_id AT2G47370.1  
At2g47380	chr2:019441694	0.0	W/19441694-19441888	AT2G47380.1  CDS  gene_syn T8I13.22  go_function cytochrome-c oxidase activity|GO:0004129||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function cytochrome-c oxidase activity|GO:0004129||ISS  product cytochrome c oxidase subunit Vc family protein / COX5C family protein  note cytochrome c oxidase subunit Vc family protein / COX5C family protein; FUNCTIONS IN: cytochrome-c oxidase activity; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase subunit Vc (InterPro:IPR008432); BEST Arabidopsis thaliana protein match is: cytochrome c oxidase subunit Vc, putative / COX5C, putative (TAIR:AT5G61310.4); Has 60 Blast hits to 60 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G47380.1p  transcript_id AT2G47380.1  protein_id AT2G47380.1p  transcript_id AT2G47380.1  
At2g47390	chr2:019445947	0.0	C/19445947-19446253,19444863-19445844,19444640-19444768,19444224-19444523,19443662-19444120,19443487-19443552,19443226-19443286,19442986-19443135,19442747-19442884,19442355-19442647,19442278-19442278	AT2G47390.1  CDS  gene_syn T8I13.23  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process proteolysis|GO:0006508||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function serine-type peptidase activity|GO:0008236||IEA  product serine-type endopeptidase/ serine-type peptidase  note serine-type endopeptidase/ serine-type peptidase; FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase active site region (InterPro:IPR001375), Peptidase S9A, oligopeptidase, N-terminal beta-propeller (InterPro:IPR004106); Has 3223 Blast hits to 3222 proteins in 462 species: Archae - 101; Bacteria - 1623; Metazoa - 419; Fungi - 20; Plants - 75; Viruses - 0; Other Eukaryotes - 985 (source: NCBI BLink).  protein_id AT2G47390.1p  transcript_id AT2G47390.1  protein_id AT2G47390.1p  transcript_id AT2G47390.1  
At2g47400	chr2:019446889	0.0	W/19446889-19447263	AT2G47400.1  CDS  gene_syn CP12, CP12-1, T8I13.24  gene CP12-1  function CP12-1 encodes a small peptide found in the chloroplast stroma. It belongs to the CP12 gene family thought to be involved in the formation of a supramolecular complex with glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and phosphoribulokinase (PRK) embedded in the Calvin cycle. The annotation of this gene is based on article 32494.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|15533878|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product CP12-1  note CP12-1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function CP12 (InterPro:IPR003823); BEST Arabidopsis thaliana protein match is: CP12-2; protein binding (TAIR:AT3G62410.1); Has 196 Blast hits to 196 proteins in 52 species: Archae - 0; Bacteria - 99; Metazoa - 0; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT2G47400.1p  transcript_id AT2G47400.1  protein_id AT2G47400.1p  transcript_id AT2G47400.1  
At2g47410	chr2:019449133	0.0	W/19449133-19449461,19449672-19449829,19450267-19450503,19450737-19450846,19450932-19451009,19451090-19451196,19451334-19451428,19451539-19451639,19451753-19451856,19451952-19452029,19452119-19452197,19452310-19452478,19452675-19452745,19452927-19453007,19453087-19453157,19453410-19453506,19453606-19453665,19453812-19453866,19453958-19454349,19454416-19455107,19455188-19455758,19455852-19456421,19456517-19456575,19456793-19456991	AT2G47410.1  CDS  gene_syn T30B22.2  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function nucleotide binding|GO:0000166||ISS  product nucleotide binding  note nucleotide binding; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G49430.1); Has 49429 Blast hits to 21636 proteins in 631 species: Archae - 36; Bacteria - 5599; Metazoa - 23093; Fungi - 9408; Plants - 4320; Viruses - 8; Other Eukaryotes - 6965 (source: NCBI BLink).  protein_id AT2G47410.1p  transcript_id AT2G47410.1  protein_id AT2G47410.1p  transcript_id AT2G47410.1  
At2g47420	chr2:019457574	0.0	W/19457574-19457891,19458034-19458777	AT2G47420.1  CDS  gene_syn T30B22.28  go_process rRNA modification|GO:0000154||IEA  go_process rRNA processing|GO:0006364||IEA  go_function rRNA (adenine-N6,N6-)-dimethyltransferase activity|GO:0000179||IEA  go_function rRNA methyltransferase activity|GO:0008649||IEA  go_function rRNA (adenine) methyltransferase activity|GO:0016433||IEA  go_component cellular_component|GO:0005575||ND  go_process rRNA modification|GO:0000154||ISS  go_function rRNA (adenine-N6,N6-)-dimethyltransferase activity|GO:0000179||ISS  go_function rRNA methyltransferase activity|GO:0008649||ISS  product dimethyladenosine transferase, putative  note dimethyladenosine transferase, putative; FUNCTIONS IN: rRNA methyltransferase activity, rRNA (adenine-N6,N6-)-dimethyltransferase activity, rRNA (adenine) methyltransferase activity; INVOLVED IN: rRNA modification, rRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: rRNA adenine dimethylase (InterPro:IPR011530), Ribosomal RNA adenine methylase transferase (InterPro:IPR001737); BEST Arabidopsis thaliana protein match is: ribosomal RNA adenine dimethylase family protein (TAIR:AT5G66360.2); Has 6710 Blast hits to 6703 proteins in 1762 species: Archae - 141; Bacteria - 3618; Metazoa - 236; Fungi - 95; Plants - 62; Viruses - 0; Other Eukaryotes - 2558 (source: NCBI BLink).  protein_id AT2G47420.1p  transcript_id AT2G47420.1  protein_id AT2G47420.1p  transcript_id AT2G47420.1  
At2g47430	chr2:019463063	0.0	C/19463063-19463122,19462694-19462933,19461913-19462572,19461444-19461822,19460771-19461354,19459459-19460691,19459167-19459379	AT2G47430.1  CDS  gene_syn CKI1, CYTOKININ-INDEPENDENT 1, HISTIDINE KINASE, T30B22.27  gene CKI1  function Encodes a putative plasma membrane-bound hybrid histidine kinase and cytokinin sensor that is expressed within the female gametophyte.  go_component membrane|GO:0016020|8875940|IDA  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_function two-component response regulator activity|GO:0000156|10610126|TAS  go_function protein histidine kinase activity|GO:0004673|10610126|TAS  go_function protein histidine kinase activity|GO:0004673||ISS  product CKI1 (CYTOKININ-INDEPENDENT 1); protein histidine kinase/ two-component response regulator  note CYTOKININ-INDEPENDENT 1 (CKI1); FUNCTIONS IN: two-component response regulator activity, protein histidine kinase activity; INVOLVED IN: cytokinin mediated signaling; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), CheY-like (InterPro:IPR011006), Signal transduction histidine kinase, core (InterPro:IPR005467), Signal transduction response regulator, receiver region (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region (InterPro:IPR003661), ATP-binding region, ATPase-like (InterPro:IPR003594), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: ATHK1 (histidine kinase 1); histidine phosphotransfer kinase/ osmosensor/ protein histidine kinase (TAIR:AT2G17820.1); Has 53722 Blast hits to 45483 proteins in 1676 species: Archae - 450; Bacteria - 44535; Metazoa - 17; Fungi - 1522; Plants - 1155; Viruses - 21; Other Eukaryotes - 6022 (source: NCBI BLink).  protein_id AT2G47430.1p  transcript_id AT2G47430.1  protein_id AT2G47430.1p  transcript_id AT2G47430.1  
At2g47440	chr2:019469912	0.0	W/19469912-19469971,19470056-19470435,19470520-19471660	AT2G47440.1  CDS  gene_syn T30B22.26  go_function binding|GO:0005488||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT3G62570.1); Has 245 Blast hits to 237 proteins in 72 species: Archae - 0; Bacteria - 6; Metazoa - 75; Fungi - 36; Plants - 107; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT2G47440.1p  transcript_id AT2G47440.1  protein_id AT2G47440.1p  transcript_id AT2G47440.1  
At2g47450	chr2:019472781	0.0	W/19472781-19473902	AT2G47450.1  CDS  gene_syn CAO, CHAOS, CHLOROPLAST SIGNAL RECOGNITION PARTICLE 43, CPSRP43, T30B22.25  gene CAO  function A component of the chloroplast signal recognition particle pathway that is involved in LHCP targeting. It is downregulated in response to high light. It recognizes the DPLG motif in Lhcb1.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function chromatin binding|GO:0003682||IEA  go_component chloroplast|GO:0009507|9878634|IDA  go_component signal recognition particle, chloroplast targeting|GO:0080085|17513500|IMP  go_process response to high light intensity|GO:0009644|15659446|IEP  go_process protein import into chloroplast thylakoid membrane|GO:0045038|9878634|TAS  product CAO (CHAOS); chromatin binding  note CHAOS (CAO); FUNCTIONS IN: chromatin binding; INVOLVED IN: response to high light intensity, protein import into chloroplast thylakoid membrane; LOCATED IN: chloroplast thylakoid membrane, chloroplast, signal recognition particle, chloroplast targeting, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chromo domain-like (InterPro:IPR016197), Chromo domain (InterPro:IPR000953), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT2G03430.1); Has 21422 Blast hits to 11047 proteins in 581 species: Archae - 48; Bacteria - 1622; Metazoa - 10138; Fungi - 1352; Plants - 647; Viruses - 136; Other Eukaryotes - 7479 (source: NCBI BLink).  protein_id AT2G47450.1p  transcript_id AT2G47450.1  protein_id AT2G47450.1p  transcript_id AT2G47450.1  
At2g47460	chr2:019476438	0.0	W/19476438-19476570,19477365-19477494,19478390-19479242	AT2G47460.1  CDS  gene_syn ATMYB12, MYB DOMAIN PROTEIN 12, MYB12, PFG1, RODUCTION OF FLAVONOL GLYCOSIDES 1, T30B22.24  gene MYB12  function MYB12 belongs to subgroup 7 of the R2R3-MYB family. It strongly activates the promoters of chalcone synthase (CHS), flavanone 3-hydroxylase (F3H), flavonol synthase (FLS) and - to a lesser extent - chalcone flavanone isomerase (CHI), but cannot activate the promoters of flavonoid-3 hydroxylase (F3 H) and dihydroflavonol 4-reductase (DF). The activation requires a functional MYB recognition element (MRE). Results from the myb12-1f allele indicate that an activation domain might be present in the C-terminus. Overexpression or knock-out plants do not show any obvious phenotype under greenhouse conditions. Young myb12-ko seedlings contain reduced amounts of flavonoids (quercetin and kaempferol), while seedlings as well as leaves of MYB12-OX plants displayed an increased flavonoid content. They did not show any significant difference in anthocyanin content. Expression of CHS and FLS shows a clear correlation to MYB12 expression levels. CHI and F3H show increased transcript levels in the MYB12-OX lines, but no differences in the knock-out. Even in the absence of functional MYB12, flavonol biosynthesis is not completely absent, suggesting functional redundancy.  The redundant factors are MYB11 and MYB111 although MYB12 is primarily required for flavonol biosynthesis in roots.  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_process flavonoid biosynthetic process|GO:0009813|15923334|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function transcription activator activity|GO:0016563|15923334|IDA  product MYB12 (MYB DOMAIN PROTEIN 12); DNA binding / transcription activator/ transcription factor  note MYB DOMAIN PROTEIN 12 (MYB12); FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, flavonoid biosynthetic process; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: ATMYB11 (MYB DOMAIN PROTEIN 11); DNA binding / transcription factor (TAIR:AT3G62610.1); Has 6201 Blast hits to 5694 proteins in 347 species: Archae - 0; Bacteria - 0; Metazoa - 674; Fungi - 267; Plants - 3785; Viruses - 6; Other Eukaryotes - 1469 (source: NCBI BLink).  protein_id AT2G47460.1p  transcript_id AT2G47460.1  protein_id AT2G47460.1p  transcript_id AT2G47460.1  
At2g47470	chr2:019481503	0.0	W/19481503-19481654,19481863-19481947,19482036-19482133,19482246-19482301,19482547-19482664,19482750-19482777,19482863-19482954,19483052-19483208,19483294-19483377,19483546-19483683	AT2G47470.4  CDS  gene_syn ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, ATPDI11, ATPDIL2-1, MATERNAL EFFECT EMBRYO ARREST 30, MEE30, PDI-LIKE 2-1, PDI11, PROTEIN DISULFIDE ISOMERASE 11, T30B22.23, UNE5, UNFERTILIZED EMBRYO SAC 5  gene UNE5  function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). AtIRE1-2 does not appear to be required for this response, but the atbzip60 mutant has a diminished response.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum|GO:0005783|19050167|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process embryo sac development|GO:0009553|19050167|IMP  go_process double fertilization forming a zygote and endosperm|GO:0009567|15634699|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process response to endoplasmic reticulum stress|GO:0034976|18574595|IEP  go_process pollen tube development|GO:0048868|19237690|IMP  go_function protein disulfide isomerase activity|GO:0003756|18574595|ISS  product UNE5 (UNFERTILIZED EMBRYO SAC 5); protein disulfide isomerase  note UNFERTILIZED EMBRYO SAC 5 (UNE5); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: embryonic development ending in seed dormancy, response to endoplasmic reticulum stress, embryo sac development, double fertilization forming a zygote and endosperm, pollen tube development; LOCATED IN: endoplasmic reticulum, plasma membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Disulphide isomerase (InterPro:IPR005788), Thioredoxin domain (InterPro:IPR013766), Endoplasmic reticulum, protein ERp29, C-terminal (InterPro:IPR011679), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATPDIL2-2 (PDI-LIKE 2-2); protein disulfide isomerase (TAIR:AT1G04980.1); Has 26275 Blast hits to 13321 proteins in 1724 species: Archae - 237; Bacteria - 9704; Metazoa - 5600; Fungi - 1507; Plants - 2177; Viruses - 26; Other Eukaryotes - 7024 (source: NCBI BLink).  protein_id AT2G47470.4p  transcript_id AT2G47470.4  protein_id AT2G47470.4p  transcript_id AT2G47470.4  
At2g47470	chr2:019481503	0.0	W/19481503-19481654,19481863-19481947,19482036-19482133,19482246-19482301,19482547-19482664,19482750-19482777,19482863-19482954,19483052-19483208,19483294-19483418,19483509-19483683	AT2G47470.1  CDS  gene_syn ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, ATPDI11, ATPDIL2-1, MATERNAL EFFECT EMBRYO ARREST 30, MEE30, PDI-LIKE 2-1, PDI11, PROTEIN DISULFIDE ISOMERASE 11, T30B22.23, UNE5, UNFERTILIZED EMBRYO SAC 5  gene UNE5  function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). AtIRE1-2 does not appear to be required for this response, but the atbzip60 mutant has a diminished response.  go_component plasma membrane|GO:0005886|17151019|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum|GO:0005783|19050167|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process embryo sac development|GO:0009553|19050167|IMP  go_process double fertilization forming a zygote and endosperm|GO:0009567|15634699|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process response to endoplasmic reticulum stress|GO:0034976|18574595|IEP  go_process pollen tube development|GO:0048868|19237690|IMP  go_function protein disulfide isomerase activity|GO:0003756|18574595|ISS  product UNE5 (UNFERTILIZED EMBRYO SAC 5); protein disulfide isomerase  note UNFERTILIZED EMBRYO SAC 5 (UNE5); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: in 6 processes; LOCATED IN: endoplasmic reticulum, plasma membrane, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Disulphide isomerase (InterPro:IPR005788), Thioredoxin domain (InterPro:IPR013766), Endoplasmic reticulum, protein ERp29, C-terminal (InterPro:IPR011679), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATPDIL2-2 (PDI-LIKE 2-2); protein disulfide isomerase (TAIR:AT1G04980.1); Has 26291 Blast hits to 13387 proteins in 1726 species: Archae - 237; Bacteria - 9706; Metazoa - 5629; Fungi - 1503; Plants - 2175; Viruses - 26; Other Eukaryotes - 7015 (source: NCBI BLink).  protein_id AT2G47470.1p  transcript_id AT2G47470.1  protein_id AT2G47470.1p  transcript_id AT2G47470.1  
At2g47470	chr2:019481503	0.0	W/19481503-19481654,19481863-19481947,19482036-19482133,19482246-19482301,19482547-19482664,19482750-19482777,19482863-19482954,19483052-19483208,19483294-19483426,19483519-19483571	AT2G47470.3  CDS  gene_syn ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, ATPDI11, ATPDIL2-1, MATERNAL EFFECT EMBRYO ARREST 30, MEE30, PDI-LIKE 2-1, PDI11, PROTEIN DISULFIDE ISOMERASE 11, T30B22.23, UNE5, UNFERTILIZED EMBRYO SAC 5  gene UNE5  function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). AtIRE1-2 does not appear to be required for this response, but the atbzip60 mutant has a diminished response.  go_component plasma membrane|GO:0005886|17151019|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum|GO:0005783|19050167|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process embryo sac development|GO:0009553|19050167|IMP  go_process double fertilization forming a zygote and endosperm|GO:0009567|15634699|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process response to endoplasmic reticulum stress|GO:0034976|18574595|IEP  go_process pollen tube development|GO:0048868|19237690|IMP  go_function protein disulfide isomerase activity|GO:0003756|18574595|ISS  product UNE5 (UNFERTILIZED EMBRYO SAC 5); protein disulfide isomerase  note UNFERTILIZED EMBRYO SAC 5 (UNE5); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: in 6 processes; LOCATED IN: endoplasmic reticulum, plasma membrane, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Disulphide isomerase (InterPro:IPR005788), Thioredoxin domain (InterPro:IPR013766), Endoplasmic reticulum, protein ERp29, C-terminal (InterPro:IPR011679), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATPDIL2-2 (PDI-LIKE 2-2); protein disulfide isomerase (TAIR:AT1G04980.1); Has 26241 Blast hits to 13316 proteins in 1723 species: Archae - 237; Bacteria - 9708; Metazoa - 5584; Fungi - 1500; Plants - 2176; Viruses - 26; Other Eukaryotes - 7010 (source: NCBI BLink).  protein_id AT2G47470.3p  transcript_id AT2G47470.3  protein_id AT2G47470.3p  transcript_id AT2G47470.3  
At2g47470	chr2:019481503	0.0	W/19481503-19481654,19481863-19481947,19482036-19482133,19482246-19482301,19482547-19482664,19482750-19482777,19482863-19482954,19483052-19483213,19483294-19483303	AT2G47470.2  CDS  gene_syn ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, ATPDI11, ATPDIL2-1, MATERNAL EFFECT EMBRYO ARREST 30, MEE30, PDI-LIKE 2-1, PDI11, PROTEIN DISULFIDE ISOMERASE 11, T30B22.23, UNE5, UNFERTILIZED EMBRYO SAC 5  gene UNE5  function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). AtIRE1-2 does not appear to be required for this response, but the atbzip60 mutant has a diminished response.  go_component plasma membrane|GO:0005886|17151019|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum|GO:0005783|19050167|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process embryo sac development|GO:0009553|19050167|IMP  go_process double fertilization forming a zygote and endosperm|GO:0009567|15634699|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process response to endoplasmic reticulum stress|GO:0034976|18574595|IEP  go_process pollen tube development|GO:0048868|19237690|IMP  go_function protein disulfide isomerase activity|GO:0003756|18574595|ISS  product UNE5 (UNFERTILIZED EMBRYO SAC 5); protein disulfide isomerase  note UNFERTILIZED EMBRYO SAC 5 (UNE5); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: in 6 processes; LOCATED IN: endoplasmic reticulum, plasma membrane, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like subdomain (InterPro:IPR006662), Disulphide isomerase (InterPro:IPR005788), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATPDIL2-2 (PDI-LIKE 2-2); protein disulfide isomerase (TAIR:AT1G04980.1); Has 26210 Blast hits to 13289 proteins in 1723 species: Archae - 237; Bacteria - 9696; Metazoa - 5543; Fungi - 1522; Plants - 2156; Viruses - 26; Other Eukaryotes - 7030 (source: NCBI BLink).  protein_id AT2G47470.2p  transcript_id AT2G47470.2  protein_id AT2G47470.2p  transcript_id AT2G47470.2  
At2g47480	chr2:019484207	0.0	C/19484207-19484539	AT2G47480.1  CDS  gene_syn T30B22.22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62640.1); Has 127 Blast hits to 127 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G47480.1p  transcript_id AT2G47480.1  protein_id AT2G47480.1p  transcript_id AT2G47480.1  
At2g47485	chr2:019486004	0.0	W/19486004-19486429	AT2G47485.1  CDS  product unknown protein  note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62650.2); Has 21 Blast hits to 21 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G47485.1p  transcript_id AT2G47485.1  protein_id AT2G47485.1p  transcript_id AT2G47485.1  
At2g47490	chr2:019487549	0.0	W/19487549-19487618,19487698-19487793,19487875-19487981,19488079-19488127,19488223-19488326,19488527-19488621,19488716-19488804,19488901-19488995,19489078-19489311	AT2G47490.1  CDS  gene_syn T30B22.21  go_component mitochondrial inner membrane|GO:0005743||IEA  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function binding|GO:0005488||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: transporter activity, binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: endomembrane system, mitochondrial inner membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: mitochondrial substrate carrier family protein (TAIR:AT1G25380.1); Has 20810 Blast hits to 10416 proteins in 364 species: Archae - 0; Bacteria - 0; Metazoa - 10511; Fungi - 5596; Plants - 2738; Viruses - 8; Other Eukaryotes - 1957 (source: NCBI BLink).  protein_id AT2G47490.1p  transcript_id AT2G47490.1  protein_id AT2G47490.1p  transcript_id AT2G47490.1  
At2g47500	chr2:019493247	0.0	W/19493247-19493376,19493608-19493774,19493874-19494017,19494104-19494334,19494420-19494491,19494610-19494678,19494767-19494841,19494913-19495038,19495122-19495203,19495293-19495562,19495640-19495746,19495833-19496011,19496117-19496278,19496376-19496629,19496723-19496886,19496990-19497103,19497185-19497666,19497759-19497882	AT2G47500.1  CDS  gene_syn T30B22.20  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product ATP binding / microtubule motor  note ATP binding / microtubule motor; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATK4 (ARABIDOPSIS THALIANA KINESIN 4); ATPase/ microtubule binding / microtubule motor (TAIR:AT5G27000.1); Has 8315 Blast hits to 7950 proteins in 310 species: Archae - 0; Bacteria - 0; Metazoa - 4424; Fungi - 931; Plants - 909; Viruses - 0; Other Eukaryotes - 2051 (source: NCBI BLink).  protein_id AT2G47500.1p  transcript_id AT2G47500.1  protein_id AT2G47500.1p  transcript_id AT2G47500.1  
At2g47510	chr2:019498614	0.0	W/19498614-19498756,19498845-19498962,19499065-19499214,19499338-19499448,19499588-19499671,19500002-19500100,19500177-19500227,19500316-19500365,19500482-19500563,19500690-19500784,19500867-19500933,19501017-19501067,19501174-19501269,19501360-19501458,19501553-19501582,19501693-19501758,19501934-19502020	AT2G47510.1  CDS  gene_syn FUM1, FUMARASE 1, T30B22.19  gene FUM1  function fumarase (FUM1)  go_component mitochondrion|GO:0005739|18385124|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function catalytic activity|GO:0003824||IEA  go_function fumarate hydratase activity|GO:0004333||IEA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process response to oxidative stress|GO:0006979|12492832|IDA  go_process pollen tube development|GO:0048868|19237690|IMP  go_function fumarate hydratase activity|GO:0004333||ISS  product FUM1 (FUMARASE 1); catalytic/ fumarate hydratase  note FUMARASE 1 (FUM1); FUNCTIONS IN: fumarate hydratase activity, catalytic activity; INVOLVED IN: response to oxidative stress, response to salt stress, pollen tube development; LOCATED IN: mitochondrion; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Fumarate hydratase, class II (InterPro:IPR005677), L-Aspartase-like (InterPro:IPR008948), Fumarate lyase (InterPro:IPR000362); BEST Arabidopsis thaliana protein match is: fumarate hydratase, putative / fumarase, putative (TAIR:AT5G50950.2); Has 12574 Blast hits to 12568 proteins in 1526 species: Archae - 227; Bacteria - 6704; Metazoa - 276; Fungi - 207; Plants - 59; Viruses - 0; Other Eukaryotes - 5101 (source: NCBI BLink).  protein_id AT2G47510.1p  transcript_id AT2G47510.1  protein_id AT2G47510.1p  transcript_id AT2G47510.1  
At2g47510	chr2:019498614	0.0	W/19498614-19498756,19498845-19498962,19499065-19499214,19499338-19499448,19499588-19499671,19500002-19500100,19500177-19500227,19500316-19500365,19500482-19500563,19500690-19500784,19500867-19500933,19501017-19501067,19501174-19501269,19501360-19501458,19501553-19501582,19501693-19501758,19501934-19502020	AT2G47510.2  CDS  gene_syn FUM1, FUMARASE 1, T30B22.19  gene FUM1  function fumarase (FUM1)  go_component mitochondrion|GO:0005739|18385124|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function catalytic activity|GO:0003824||IEA  go_function fumarate hydratase activity|GO:0004333||IEA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process response to oxidative stress|GO:0006979|12492832|IDA  go_process pollen tube development|GO:0048868|19237690|IMP  go_function fumarate hydratase activity|GO:0004333||ISS  product FUM1 (FUMARASE 1); catalytic/ fumarate hydratase  note FUMARASE 1 (FUM1); FUNCTIONS IN: fumarate hydratase activity, catalytic activity; INVOLVED IN: response to oxidative stress, response to salt stress, pollen tube development; LOCATED IN: mitochondrion; EXPRESSED IN: cotyledon, male gametophyte, guard cell, root; CONTAINS InterPro DOMAIN/s: Fumarate hydratase, class II (InterPro:IPR005677), L-Aspartase-like (InterPro:IPR008948), Fumarate lyase (InterPro:IPR000362); BEST Arabidopsis thaliana protein match is: fumarate hydratase, putative / fumarase, putative (TAIR:AT5G50950.2); Has 12574 Blast hits to 12568 proteins in 1526 species: Archae - 227; Bacteria - 6704; Metazoa - 276; Fungi - 207; Plants - 59; Viruses - 0; Other Eukaryotes - 5101 (source: NCBI BLink).  protein_id AT2G47510.2p  transcript_id AT2G47510.2  protein_id AT2G47510.2p  transcript_id AT2G47510.2  
At2g47520	chr2:019503385	0.0	C/19503385-19503490,19502891-19503300	AT2G47520.1  CDS  gene_syn T30B22.18  function encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: shoot apex, embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN); DNA binding / protein binding / transcription activator/ transcription factor (TAIR:AT3G16770.1); Has 4045 Blast hits to 3766 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4029; Viruses - 1; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT2G47520.1p  transcript_id AT2G47520.1  protein_id AT2G47520.1p  transcript_id AT2G47520.1  
At2g47530	chr2:019504220	0.0	W/19504220-19504439,19504518-19504852	AT2G47530.1  CDS  gene_syn T30B22.17  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: PRP3 (PROLINE-RICH PROTEIN 3); structural constituent of cell wall (TAIR:AT3G62680.1); Has 105 Blast hits to 105 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G47530.1p  transcript_id AT2G47530.1  protein_id AT2G47530.1p  transcript_id AT2G47530.1  
At2g47540	chr2:019505901	0.0	W/19505901-19506066,19506149-19506504	AT2G47540.1  CDS  gene_syn T30B22.16  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pollen Ole e 1 allergen and extensin family protein  note pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen and extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: pollen Ole e 1 allergen and extensin family protein (TAIR:AT4G02270.1); Has 87 Blast hits to 87 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G47540.1p  transcript_id AT2G47540.1  protein_id AT2G47540.1p  transcript_id AT2G47540.1  
At2g47550	chr2:019509024	0.0	W/19509024-19509570,19509966-19510406,19510910-19511604	AT2G47550.1  CDS  gene_syn T30B22.15  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase inhibitor (InterPro:IPR006501), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: ATPMEPCRB; pectinesterase (TAIR:AT4G02330.1); Has 1249 Blast hits to 1211 proteins in 175 species: Archae - 0; Bacteria - 239; Metazoa - 1; Fungi - 135; Plants - 873; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G47550.1p  transcript_id AT2G47550.1  protein_id AT2G47550.1p  transcript_id AT2G47550.1  
At2g47560	chr2:019511934	0.0	C/19511934-19512617	AT2G47560.1  CDS  gene_syn T30B22.14  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: pedicel, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: ATL5 (ATL5); protein binding / zinc ion binding (TAIR:AT3G62690.1); Has 7116 Blast hits to 7098 proteins in 246 species: Archae - 0; Bacteria - 0; Metazoa - 2280; Fungi - 651; Plants - 2839; Viruses - 105; Other Eukaryotes - 1241 (source: NCBI BLink).  protein_id AT2G47560.1p  transcript_id AT2G47560.1  protein_id AT2G47560.1p  transcript_id AT2G47560.1  
At2g47570	chr2:019516655	0.0	C/19516655-19516717,19516366-19516551,19515898-19516056	AT2G47570.1  CDS  gene_syn T30B22.13  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L18 (RPL18A)  note 60S ribosomal protein L18 (RPL18A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, large ribosomal subunit; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18e (InterPro:IPR000039); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L18 (RPL18C) (TAIR:AT5G27850.1); Has 570 Blast hits to 570 proteins in 224 species: Archae - 9; Bacteria - 0; Metazoa - 273; Fungi - 98; Plants - 80; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT2G47570.1p  transcript_id AT2G47570.1  protein_id AT2G47570.1p  transcript_id AT2G47570.1  
At2g47580	chr2:019517229	0.0	W/19517229-19517325,19517444-19517616,19517894-19517987,19518186-19518283,19518396-19518686	AT2G47580.1  CDS  gene_syn SPLICEOSOMAL PROTEIN U1A, T30B22.12, U1A, U1SNRNP-SPECIFIC PROTEIN  gene U1A  function encodes spliceosomal protein U1A  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component snRNP U1|GO:0005685|7556097|ISS  go_component nucleolus|GO:0005730|15610358|IDA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|7556097|ISS  go_process response to salt stress|GO:0009651|12047626|IGI  go_function RNA binding|GO:0003723||ISS  product U1A (SPLICEOSOMAL PROTEIN U1A); RNA binding / nucleic acid binding / nucleotide binding  note SPLICEOSOMAL PROTEIN U1A (U1A); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, response to salt stress; LOCATED IN: nucleolus, nucleus, snRNP U1; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: U2B   (U2 small nuclear ribonucleoprotein B); RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT2G30260.1); Has 1829 Blast hits to 1791 proteins in 210 species: Archae - 0; Bacteria - 32; Metazoa - 1024; Fungi - 352; Plants - 206; Viruses - 1; Other Eukaryotes - 214 (source: NCBI BLink).  protein_id AT2G47580.1p  transcript_id AT2G47580.1  protein_id AT2G47580.1p  transcript_id AT2G47580.1  
At2g47585	chr2:019520770	0.0	W/19520770-19520847	AT2G47585.1  miRNA  gene_syn MICRORNA 164, MICRORNA 164A, MIR164, MIR164A  gene MIR164A  function Encodes a microRNA that targets several genes containing NAC domains including NAC1 and ORE1. Overexpression leads to decreased NAC1 mRNA and reduced lateral roots. Loss of function mutants have increased NAC1 and increased number of lateral roots. Also targets CUC2 and modulates the extent of leaf margin serration. Also targets ORE1 to negatively regulate the timing of leaf senescence. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGGAGAAGCAGGGCACGUGCA  go_component cellular_component|GO:0005575||ND  go_process leaf senescence|GO:0010150|19229035|IMP  go_process negative regulation of transcription|GO:0016481|17287247|IMP  go_process gene silencing by miRNA, mRNA cleavage|GO:0035279|15829603|IDA  go_function translation repressor activity, nucleic acid binding|GO:0000900|15829603|IMP  product MIR164A (MICRORNA 164A); miRNA  transcript_id AT2G47585.1  
At2g47590	chr2:019521888	0.0	W/19521888-19522841,19523154-19523395,19523490-19523555,19523651-19523732	AT2G47590.1  CDS  gene_syn PHOTOLYASE/BLUE-LIGHT RECEPTOR 2, PHR2, T30B22.11, photolyase/blue-light receptor 2  gene PHR2  function photolyase/blue light photoreceptor PHR2 (PHR2) mRNA,  go_process DNA repair|GO:0006281||IEA  go_component cellular_component|GO:0005575||ND  go_process DNA repair|GO:0006281||ISS  go_function DNA photolyase activity|GO:0003913||NAS  product PHR2 (photolyase/blue-light receptor 2); DNA photolyase  note photolyase/blue-light receptor 2 (PHR2); FUNCTIONS IN: DNA photolyase activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101); BEST Arabidopsis thaliana protein match is: CRY3 (cryptochrome 3); DNA binding / DNA photolyase/ FMN binding (TAIR:AT5G24850.1); Has 3675 Blast hits to 3674 proteins in 745 species: Archae - 43; Bacteria - 1369; Metazoa - 316; Fungi - 70; Plants - 289; Viruses - 0; Other Eukaryotes - 1588 (source: NCBI BLink).  protein_id AT2G47590.1p  transcript_id AT2G47590.1  protein_id AT2G47590.1p  transcript_id AT2G47590.1  
At2g47600	chr2:019526438	0.0	C/19526438-19526828,19526176-19526351,19525966-19526084,19525702-19525874,19525438-19525553,19525103-19525319,19524886-19525015,19524518-19524815	AT2G47600.1  CDS  gene_syn ARABIDOPSIS THALIANA MAGNESIUM/PROTON EXCHANGER, ATMHX, ATMHX1, MAGNESIUM/PROTON EXCHANGER 1, MHX1, T30B22.10  gene ATMHX  function Encodes a magnesium/proton exchanger, member of putative Na+/Ca2+ antiporter gene family  go_component vacuolar membrane|GO:0005774|10406802|IDA  go_process cation transport|GO:0006812|10406802|IC  go_process iron ion transport|GO:0006826|10406802|IGI  go_process zinc ion transport|GO:0006829|10406802|IGI  go_process zinc ion transport|GO:0006829|11500563|TAS  go_process magnesium ion transport|GO:0015693|10406802|IGI  go_process magnesium ion transport|GO:0015693|11500563|TAS  go_function calcium:sodium antiporter activity|GO:0005432||ISS  go_function cation:cation antiporter activity|GO:0015491|10406802|IDA  go_function cation:cation antiporter activity|GO:0015491|10406802|IMP  product ATMHX (ARABIDOPSIS THALIANA MAGNESIUM/PROTON EXCHANGER); calcium:sodium antiporter/ cation:cation antiporter  note ARABIDOPSIS THALIANA MAGNESIUM/PROTON EXCHANGER (ATMHX); FUNCTIONS IN: cation:cation antiporter activity, calcium:sodium antiporter activity; INVOLVED IN: magnesium ion transport, zinc ion transport, cation transport, iron ion transport; LOCATED IN: vacuolar membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sodium/calcium exchanger membrane region (InterPro:IPR004837); Has 2069 Blast hits to 1719 proteins in 421 species: Archae - 7; Bacteria - 279; Metazoa - 1532; Fungi - 7; Plants - 33; Viruses - 0; Other Eukaryotes - 211 (source: NCBI BLink).  protein_id AT2G47600.1p  transcript_id AT2G47600.1  protein_id AT2G47600.1p  transcript_id AT2G47600.1  
At2g47610	chr2:019529854	0.0	W/19529854-19529856,19530181-19530225,19530345-19530546,19530705-19531003,19531085-19531177,19531270-19531401	AT2G47610.1  CDS  gene_syn T30B22.8  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 60S ribosomal protein L7A (RPL7aA)  note 60S ribosomal protein L7A (RPL7aA); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, nucleolus, plasma membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L7A (InterPro:IPR001921), Ribosomal protein L7A/RS6 family (InterPro:IPR018492), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038), Ribosomal protein L7Ae conserved site (InterPro:IPR004037); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L7A (RPL7aB) (TAIR:AT3G62870.1); Has 1594 Blast hits to 1594 proteins in 293 species: Archae - 217; Bacteria - 0; Metazoa - 627; Fungi - 243; Plants - 175; Viruses - 0; Other Eukaryotes - 332 (source: NCBI BLink).  protein_id AT2G47610.1p  transcript_id AT2G47610.1  protein_id AT2G47610.1p  transcript_id AT2G47610.1  
At2g47620	chr2:019532034	0.0	W/19532034-19532091,19532247-19532767,19532863-19533309,19533470-19533609,19533695-19533744,19533831-19533976,19534075-19534251	AT2G47620.1  CDS  gene_syn ATSWI3A, CHB1, SWITCH/SUCROSE NONFERMENTING 3A, T30B22.7  gene ATSWI3A  function Homologous to yeast SWI3 and a member of the Arabidopsis SWI3 gene family. Protein physically interacts with ATSWI3B and ATSWI3C, the other two members of the SWI3 family.  go_function DNA binding|GO:0003677||IEA  go_component SWI/SNF complex|GO:0016514|12140326|ISS  go_process chromatin remodeling|GO:0006338|12140326|ISS  go_function DNA binding|GO:0003677||ISS  product ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A); DNA binding  note SWITCH/SUCROSE NONFERMENTING 3A (ATSWI3A); FUNCTIONS IN: DNA binding; INVOLVED IN: chromatin remodeling; LOCATED IN: SWI/SNF complex; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SWIRM (InterPro:IPR007526), SANT, eukarya (InterPro:IPR017884); BEST Arabidopsis thaliana protein match is: ATSWI3B (SWITCH SUBUNIT 3); DNA binding (TAIR:AT2G33610.1); Has 682 Blast hits to 529 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 344; Fungi - 143; Plants - 110; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT2G47620.1p  transcript_id AT2G47620.1  protein_id AT2G47620.1p  transcript_id AT2G47620.1  
At2g47630	chr2:019534637	0.0	W/19534637-19534666,19534809-19534905,19534993-19535025,19535654-19535800,19535918-19536048,19536141-19536278,19536357-19536455,19536531-19536911	AT2G47630.1  CDS  gene_syn F17A22.2  go_component plasma membrane|GO:0005886|17317660|IDA  go_function catalytic activity|GO:0003824||ISS  product esterase/lipase/thioesterase family protein  note esterase/lipase/thioesterase family protein; FUNCTIONS IN: catalytic activity; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: esterase/lipase/thioesterase family protein (TAIR:AT3G62860.1); Has 1686 Blast hits to 1682 proteins in 561 species: Archae - 17; Bacteria - 974; Metazoa - 101; Fungi - 71; Plants - 243; Viruses - 48; Other Eukaryotes - 232 (source: NCBI BLink).  protein_id AT2G47630.1p  transcript_id AT2G47630.1  protein_id AT2G47630.1p  transcript_id AT2G47630.1  
At2g47640	chr2:019537393	0.0	W/19537393-19537397,19537505-19537529,19537860-19537937,19538128-19538232,19538315-19538431	AT2G47640.1  CDS  gene_syn F17A22.3  go_component nucleolus|GO:0005730|15496452|IDA  go_component nucleus|GO:0005634||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_function molecular_function|GO:0003674||ND  product small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative  note small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus, small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62840.1); Has 534 Blast hits to 534 proteins in 163 species: Archae - 2; Bacteria - 0; Metazoa - 239; Fungi - 108; Plants - 78; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT2G47640.1p  transcript_id AT2G47640.1  protein_id AT2G47640.1p  transcript_id AT2G47640.1  
At2g47640	chr2:019537393	0.0	W/19537393-19537397,19537505-19537529,19537860-19537937,19538128-19538232,19538315-19538431	AT2G47640.4  CDS  gene_syn F17A22.3  go_component nucleus|GO:0005634||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_function molecular_function|GO:0003674||ND  product small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative  note small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative; FUNCTIONS IN: molecular_function unknown; LOCATED IN: small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62840.1); Has 534 Blast hits to 534 proteins in 163 species: Archae - 2; Bacteria - 0; Metazoa - 239; Fungi - 108; Plants - 78; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT2G47640.4p  transcript_id AT2G47640.4  protein_id AT2G47640.4p  transcript_id AT2G47640.4  
At2g47640	chr2:019537393	0.0	W/19537393-19537397,19537505-19537529,19537863-19537937,19538128-19538232,19538315-19538431	AT2G47640.2  CDS  gene_syn F17A22.3  go_component nucleolus|GO:0005730|15496452|IDA  go_component nucleus|GO:0005634||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_function molecular_function|GO:0003674||ND  product small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative  note small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus, small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62840.2); Has 536 Blast hits to 536 proteins in 164 species: Archae - 2; Bacteria - 0; Metazoa - 239; Fungi - 108; Plants - 78; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).  protein_id AT2G47640.2p  transcript_id AT2G47640.2  protein_id AT2G47640.2p  transcript_id AT2G47640.2  
At2g47640	chr2:019537393	0.0	W/19537393-19537397,19537505-19537529,19537863-19537937,19538128-19538232,19538315-19538431	AT2G47640.3  CDS  gene_syn F17A22.3  go_component nucleolus|GO:0005730|15496452|IDA  go_component nucleus|GO:0005634||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_function molecular_function|GO:0003674||ND  product small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative  note small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus, small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62840.2); Has 536 Blast hits to 536 proteins in 164 species: Archae - 2; Bacteria - 0; Metazoa - 239; Fungi - 108; Plants - 78; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).  protein_id AT2G47640.3p  transcript_id AT2G47640.3  protein_id AT2G47640.3p  transcript_id AT2G47640.3  
At2g47650	chr2:019540741	0.0	C/19540741-19541364,19540483-19540630,19540033-19540112,19539871-19539954,19539708-19539782,19539064-19539156,19538751-19538978	AT2G47650.1  CDS  gene_syn T30B22.31, T30B22_31, UDP-XYLOSE SYNTHASE 4, UXS4  gene UXS4  function encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.  go_component vacuole|GO:0005773|14760709|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component membrane|GO:0016020|12481102|TAS  go_process nucleotide-sugar metabolic process|GO:0009225||ISS  go_process D-xylose metabolic process|GO:0042732|12481102|TAS  go_function catalytic activity|GO:0003824||ISS  go_function UDP-glucuronate decarboxylase activity|GO:0048040|12481102|ISS  product UXS4 (UDP-XYLOSE SYNTHASE 4); UDP-glucuronate decarboxylase/ catalytic  note UDP-XYLOSE SYNTHASE 4 (UXS4); FUNCTIONS IN: UDP-glucuronate decarboxylase activity, catalytic activity; INVOLVED IN: D-xylose metabolic process, nucleotide-sugar metabolic process; LOCATED IN: Golgi apparatus, plasma membrane, vacuole, membrane; EXPRESSED IN: cotyledon, male gametophyte, cultured cell, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: AUD1; UDP-glucuronate decarboxylase/ catalytic/ dTDP-glucose 4,6-dehydratase (TAIR:AT3G62830.2); Has 32009 Blast hits to 31982 proteins in 1722 species: Archae - 501; Bacteria - 14570; Metazoa - 658; Fungi - 233; Plants - 759; Viruses - 40; Other Eukaryotes - 15248 (source: NCBI BLink).  protein_id AT2G47650.1p  transcript_id AT2G47650.1  protein_id AT2G47650.1p  transcript_id AT2G47650.1  
At2g47660	chr2:019542952	0.0	W/19542952-19543054,19543156-19543160	AT2G47660.1  CDS  gene_syn F17A22.5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G47660.1p  transcript_id AT2G47660.1  protein_id AT2G47660.1p  transcript_id AT2G47660.1  
At2g47670	chr2:019544131	0.0	C/19544131-19544757	AT2G47670.1  CDS  gene_syn F17A22.6  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT3G62820.1); Has 436 Blast hits to 431 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 436; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G47670.1p  transcript_id AT2G47670.1  protein_id AT2G47670.1p  transcript_id AT2G47670.1  
At2g47680	chr2:019550712	0.0	C/19550712-19550871,19550169-19550346,19549853-19550026,19549518-19549665,19549091-19549399,19548797-19548943,19548537-19548717,19547921-19548198,19547714-19547830,19547488-19547632,19547093-19547361,19546728-19546922,19546129-19546662,19545828-19546040	AT2G47680.1  CDS  gene_syn F17A22.7  go_component chloroplast|GO:0009507|15028209|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||ISS  go_function nucleic acid binding|GO:0003676||ISS  go_function helicase activity|GO:0004386||ISS  product zinc finger (CCCH type) helicase family protein  note zinc finger (CCCH type) helicase family protein; FUNCTIONS IN: helicase activity, zinc ion binding, nucleic acid binding, ATP binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP binding / ATP-dependent helicase/ RNA binding / double-stranded RNA binding / helicase/ nucleic acid binding (TAIR:AT2G01130.1); Has 6692 Blast hits to 6222 proteins in 916 species: Archae - 0; Bacteria - 1902; Metazoa - 2094; Fungi - 874; Plants - 359; Viruses - 182; Other Eukaryotes - 1281 (source: NCBI BLink).  protein_id AT2G47680.1p  transcript_id AT2G47680.1  protein_id AT2G47680.1p  transcript_id AT2G47680.1  
At2g47690	chr2:019551263	0.0	W/19551263-19551517,19551951-19552052	AT2G47690.1  CDS  gene_syn F17A22.8  go_component mitochondrion|GO:0005739|12837548|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial membrane|GO:0031966|16407270|IDA  go_component respiratory chain complex I|GO:0045271|16407270|IDA  go_process photorespiration|GO:0009853|16407270|TAS  go_function molecular_function|GO:0003674||ND  product NADH-ubiquinone oxidoreductase-related  note NADH-ubiquinone oxidoreductase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, respiratory chain complex I; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: NADH-ubiquinone oxidoreductase-related (TAIR:AT3G62790.1); Has 86 Blast hits to 86 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 44; Plants - 36; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G47690.1p  transcript_id AT2G47690.1  protein_id AT2G47690.1p  transcript_id AT2G47690.1  
At2g47690	chr2:019551263	0.0	W/19551263-19551521,19551951-19551991	AT2G47690.2  CDS  gene_syn F17A22.8  go_component mitochondrion|GO:0005739|12837548|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial membrane|GO:0031966|16407270|IDA  go_component respiratory chain complex I|GO:0045271|16407270|IDA  go_process photorespiration|GO:0009853|16407270|TAS  go_function molecular_function|GO:0003674||ND  product NADH-ubiquinone oxidoreductase-related  note NADH-ubiquinone oxidoreductase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, respiratory chain complex I; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: NADH-ubiquinone oxidoreductase-related (TAIR:AT3G62790.1); Has 85 Blast hits to 85 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 43; Plants - 36; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G47690.2p  transcript_id AT2G47690.2  protein_id AT2G47690.2p  transcript_id AT2G47690.2  
At2g47700	chr2:019554159	0.0	C/19554159-19554351,19553613-19553785,19553433-19553491,19553300-19553325,19552922-19553210,19552506-19552842	AT2G47700.1  CDS  gene_syn F17A22.9  go_function ubiquitin-protein ligase activity|GO:0004842|15644464|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: transcription factor, putative / zinc finger (C3HC4 type RING finger) family protein (TAIR:AT3G05545.1); Has 360 Blast hits to 360 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 172; Fungi - 15; Plants - 110; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT2G47700.1p  transcript_id AT2G47700.1  protein_id AT2G47700.1p  transcript_id AT2G47700.1  
At2g47710	chr2:019555773	0.0	C/19555773-19555956,19555576-19555670,19555217-19555338,19555045-19555132	AT2G47710.1  CDS  gene_syn F17A22.10  go_component vacuole|GO:0005773|15539469|IDA  go_process response to stress|GO:0006950||IEA  go_process response to stress|GO:0006950||ISS  go_function molecular_function|GO:0003674||ND  product universal stress protein (USP) family protein  note universal stress protein (USP) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49050.1); Has 1402 Blast hits to 1369 proteins in 323 species: Archae - 50; Bacteria - 850; Metazoa - 46; Fungi - 22; Plants - 381; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT2G47710.1p  transcript_id AT2G47710.1  protein_id AT2G47710.1p  transcript_id AT2G47710.1  
At2g47720	chr2:019556624	0.0	W/19556624-19556750,19557048-19557139	AT2G47720.1  CDS  gene_syn F17A22.11  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: AtATG18a (TAIR:AT3G62770.1); Has 11 Blast hits to 11 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G47720.1p  transcript_id AT2G47720.1  protein_id AT2G47720.1p  transcript_id AT2G47720.1  
At2g47730	chr2:019558213	0.0	W/19558213-19558506,19558609-19558657,19558818-19559266	AT2G47730.1  CDS  gene_syn ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 8, ATGSTF5, ATGSTF8, F17A22.12, GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5, GLUTATHIONE S-TRANSFERASE 16, GLUTATHIONE S-TRANSFERASE PHI 8, GST6, GSTF8  gene ATGSTF8  function Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).  go_component nucleus|GO:0005634|14617066|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_function glutathione binding|GO:0043295|15159623|IDA  go_component chloroplast|GO:0009507|12090627|ISS  go_component stromule|GO:0010319|16923014|IDA  go_process defense response|GO:0006952|10571852|IEP  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_process response to cold|GO:0009409|16923014|IEP  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function glutathione transferase activity|GO:0004364|18334669|IDA  go_function glutathione transferase activity|GO:0004364|9011080|ISS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTF8 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 8); glutathione binding / glutathione transferase  note ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 8 (ATGSTF8); FUNCTIONS IN: glutathione transferase activity, glutathione binding; INVOLVED IN: in 7 processes; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTF2 (GLUTATHIONE S-TRANSFERASE PHI 2); glutathione binding / glutathione transferase (TAIR:AT4G02520.1); Has 11474 Blast hits to 11461 proteins in 996 species: Archae - 0; Bacteria - 5983; Metazoa - 1722; Fungi - 494; Plants - 731; Viruses - 0; Other Eukaryotes - 2544 (source: NCBI BLink).  protein_id AT2G47730.1p  transcript_id AT2G47730.1  protein_id AT2G47730.1p  transcript_id AT2G47730.1  
At2g47740	chr2:019559855	0.0	C/19559855-19559925	AT2G47740.1  tRNA  gene_syn 40776.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: CCC)  transcript_id AT2G47740.1  
At2g47750	chr2:019562691	0.0	C/19562691-19562974,19562482-19562583,19560922-19561745,19560307-19560854	AT2G47750.1  CDS  gene_syn F17A22.14, GH3.9, PUTATIVE INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.9  gene GH3.9  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product GH3.9 (PUTATIVE INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.9)  note PUTATIVE INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.9 (GH3.9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: chloroplast envelope; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: GH3.17; indole-3-acetic acid amido synthetase (TAIR:AT1G28130.1); Has 681 Blast hits to 621 proteins in 106 species: Archae - 0; Bacteria - 203; Metazoa - 49; Fungi - 2; Plants - 219; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink).  protein_id AT2G47750.1p  transcript_id AT2G47750.1  protein_id AT2G47750.1p  transcript_id AT2G47750.1  
At2g47760	chr2:019568056	0.0	C/19568056-19568221,19567922-19567956,19567707-19567844,19567532-19567600,19567197-19567354,19567062-19567128,19566913-19566966,19566635-19566723,19566423-19566539,19566224-19566333,19566073-19566151,19565933-19565993	AT2G47760.3  CDS  gene_syn ALG3, F17A22.15  gene ALG3  go_component endoplasmic reticulum|GO:0005783|18567790|IDA  go_process protein amino acid glycosylation|GO:0006486|18567790|IMP  go_function alpha-1,3-mannosyltransferase activity|GO:0000033|18567790|IDA  go_function catalytic activity|GO:0003824||ISS  product ALG3; alpha-1,3-mannosyltransferase/ catalytic  note ALG3; FUNCTIONS IN: alpha-1,3-mannosyltransferase activity, catalytic activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyltransferase, ALG3 (InterPro:IPR007873); Has 285 Blast hits to 244 proteins in 121 species: Archae - 2; Bacteria - 2; Metazoa - 130; Fungi - 100; Plants - 19; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT2G47760.3p  transcript_id AT2G47760.3  protein_id AT2G47760.3p  transcript_id AT2G47760.3  
At2g47760	chr2:019568056	0.0	C/19568056-19568221,19567922-19567956,19567707-19567844,19567532-19567600,19567197-19567354,19567062-19567128,19566913-19566966,19566635-19566723,19566423-19566539,19566224-19566333,19566073-19566151,19565937-19565993,19565672-19565849	AT2G47760.1  CDS  gene_syn ALG3, F17A22.15  gene ALG3  go_component endoplasmic reticulum|GO:0005783|18567790|IDA  go_process protein amino acid glycosylation|GO:0006486|18567790|IMP  go_function alpha-1,3-mannosyltransferase activity|GO:0000033|18567790|IDA  go_function catalytic activity|GO:0003824||ISS  product ALG3; alpha-1,3-mannosyltransferase/ catalytic  note ALG3; FUNCTIONS IN: alpha-1,3-mannosyltransferase activity, catalytic activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyltransferase, ALG3 (InterPro:IPR007873); Has 288 Blast hits to 246 proteins in 122 species: Archae - 2; Bacteria - 2; Metazoa - 131; Fungi - 102; Plants - 19; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT2G47760.1p  transcript_id AT2G47760.1  protein_id AT2G47760.1p  transcript_id AT2G47760.1  
At2g47760	chr2:019568056	0.0	C/19568056-19568221,19567922-19567956,19567707-19567844,19567535-19567600,19567197-19567354,19567062-19567128,19566913-19566966,19566635-19566723,19566423-19566539,19566224-19566333,19566073-19566151,19565937-19565993,19565672-19565849	AT2G47760.2  CDS  gene_syn ALG3, F17A22.15  gene ALG3  go_component endoplasmic reticulum|GO:0005783|18567790|IDA  go_process protein amino acid glycosylation|GO:0006486|18567790|IMP  go_function alpha-1,3-mannosyltransferase activity|GO:0000033|18567790|IDA  go_function catalytic activity|GO:0003824||ISS  product ALG3; alpha-1,3-mannosyltransferase/ catalytic  note ALG3; FUNCTIONS IN: alpha-1,3-mannosyltransferase activity, catalytic activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyltransferase, ALG3 (InterPro:IPR007873); Has 289 Blast hits to 247 proteins in 121 species: Archae - 0; Bacteria - 2; Metazoa - 131; Fungi - 102; Plants - 19; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT2G47760.2p  transcript_id AT2G47760.2  protein_id AT2G47760.2p  transcript_id AT2G47760.2  
At2g47770	chr2:019568701	0.0	W/19568701-19569291	AT2G47770.1  CDS  gene_syn F17A22.16  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product benzodiazepine receptor-related  note benzodiazepine receptor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: TspO/MBR-related protein (InterPro:IPR004307); Has 415 Blast hits to 415 proteins in 124 species: Archae - 12; Bacteria - 141; Metazoa - 131; Fungi - 6; Plants - 23; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).  protein_id AT2G47770.1p  transcript_id AT2G47770.1  protein_id AT2G47770.1p  transcript_id AT2G47770.1  
At2g47780	chr2:019570076	0.0	W/19570076-19570399,19570481-19570864	AT2G47780.1  CDS  gene_syn F17A22.17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product rubber elongation factor (REF) protein-related  note rubber elongation factor (REF) protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Rubber elongation factor (InterPro:IPR008802); BEST Arabidopsis thaliana protein match is: rubber elongation factor (REF) family protein (TAIR:AT3G05500.1); Has 76 Blast hits to 76 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G47780.1p  transcript_id AT2G47780.1  protein_id AT2G47780.1p  transcript_id AT2G47780.1  
At2g47790	chr2:019572798	0.0	C/19572798-19572946,19572503-19572716,19572317-19572412,19572098-19572172,19571898-19572008,19571716-19571807,19571557-19571641,19571102-19571458	AT2G47790.1  CDS  gene_syn F17A22.18  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT4G02730.1); Has 8923 Blast hits to 5742 proteins in 332 species: Archae - 8; Bacteria - 1962; Metazoa - 3030; Fungi - 2021; Plants - 501; Viruses - 0; Other Eukaryotes - 1401 (source: NCBI BLink).  protein_id AT2G47790.1p  transcript_id AT2G47790.1  protein_id AT2G47790.1p  transcript_id AT2G47790.1  
At2g47800	chr2:019574944	0.0	W/19574944-19577040,19577125-19577445,19577538-19577624,19577701-19578360,19578448-19578612,19578708-19579002,19579094-19579308,19579397-19579702,19579799-19579862,19579960-19580199,19580283-19580383	AT2G47800.1  CDS  gene_syn ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 4, ATMRP4, EST3, F17A22.19, MRP4  gene ATMRP4  function Encodes a plasma membrane localized ATPase transporter involved in multidrug transport. The expression of this gene is upregulated by herbicide safeners such as benoxacor, fluxofenim and fenclorim.  go_component plant-type vacuole|GO:0000325|16618929|IDA  go_component vacuole|GO:0005773|14760709|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component vacuolar membrane|GO:0005774|16618929|IDA  go_component plasma membrane|GO:0005886|15225287|IDA  go_component plasma membrane|GO:0005886|16506311|TAS  go_process multidrug transport|GO:0006855|16506311|ISS  go_process response to water deprivation|GO:0009414|15225287|IMP  go_process response to wounding|GO:0009611|17953483|IEP  go_process response to nematode|GO:0009624|16478044|IEP  go_process stomatal movement|GO:0010118|15225287|IMP  go_function folic acid transporter activity|GO:0008517|15225287|IGI  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|11346655|ISS  product ATMRP4 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 4); ATPase, coupled to transmembrane movement of substances / folic acid transporter  note ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 4 (ATMRP4); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, folic acid transporter activity; INVOLVED IN: response to water deprivation, multidrug transport, response to wounding, stomatal movement, response to nematode; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATMRP10; ATPase, coupled to transmembrane movement of substances (TAIR:AT3G62700.1); Has 413989 Blast hits to 216523 proteins in 2578 species: Archae - 7725; Bacteria - 293803; Metazoa - 11147; Fungi - 5599; Plants - 3245; Viruses - 17; Other Eukaryotes - 92453 (source: NCBI BLink).  protein_id AT2G47800.1p  transcript_id AT2G47800.1  protein_id AT2G47800.1p  transcript_id AT2G47800.1  
At2g47810	chr2:019582938	0.0	C/19582938-19583420	AT2G47810.1  CDS  gene_syn F17A22.20, NF-YB5, NUCLEAR FACTOR Y, SUBUNIT B5  gene NF-YB5  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YB5 (NUCLEAR FACTOR Y, SUBUNIT B5); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT B5 (NF-YB5); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; EXPRESSED IN: male gametophyte, sepal, root, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3); transcription factor (TAIR:AT4G14540.1); Has 971 Blast hits to 971 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 378; Fungi - 221; Plants - 295; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT2G47810.1p  transcript_id AT2G47810.1  protein_id AT2G47810.1p  transcript_id AT2G47810.1  
At2g47820	chr2:019588122	0.0	W/19588122-19588862,19588953-19590629	AT2G47820.1  CDS  gene_syn F17A22.21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09050.1); Has 517 Blast hits to 442 proteins in 113 species: Archae - 0; Bacteria - 71; Metazoa - 149; Fungi - 52; Plants - 47; Viruses - 10; Other Eukaryotes - 188 (source: NCBI BLink).  protein_id AT2G47820.1p  transcript_id AT2G47820.1  protein_id AT2G47820.1p  transcript_id AT2G47820.1  
At2g47830	chr2:019593632	0.0	C/19593632-19593973,19593476-19593545,19593296-19593393,19592991-19593106,19592646-19592761,19592316-19592412,19592088-19592172,19591858-19591920,19591674-19591779,19591461-19591591,19591277-19591368,19591094-19591193	AT2G47830.1  CDS  gene_syn F17A22.22  go_component membrane|GO:0016020||IEA  go_process cation transport|GO:0006812||IEA  go_function cation transmembrane transporter activity|GO:0008324||IEA  go_component membrane|GO:0016020||ISS  go_process cation transport|GO:0006812||ISS  go_function cation transmembrane transporter activity|GO:0008324||ISS  go_function efflux transmembrane transporter activity|GO:0015562||ISS  product cation efflux family protein / metal tolerance protein, putative (MTPc1)  note cation efflux family protein / metal tolerance protein, putative (MTPc1); FUNCTIONS IN: cation transmembrane transporter activity, efflux transmembrane transporter activity; INVOLVED IN: cation transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: cation efflux family protein (TAIR:AT1G79520.1); Has 5384 Blast hits to 5376 proteins in 1306 species: Archae - 160; Bacteria - 4109; Metazoa - 267; Fungi - 281; Plants - 144; Viruses - 0; Other Eukaryotes - 423 (source: NCBI BLink).  protein_id AT2G47830.1p  transcript_id AT2G47830.1  protein_id AT2G47830.1p  transcript_id AT2G47830.1  
At2g47830	chr2:019593632	0.0	C/19593632-19593973,19593476-19593545,19593296-19593393,19592991-19593106,19592646-19592761,19592316-19592412,19592088-19592172,19591858-19591920,19591674-19591779,19591461-19591591,19591286-19591368,19591094-19591193	AT2G47830.2  CDS  gene_syn F17A22.22  go_component membrane|GO:0016020||IEA  go_process cation transport|GO:0006812||IEA  go_function cation transmembrane transporter activity|GO:0008324||IEA  go_component membrane|GO:0016020||ISS  go_process cation transport|GO:0006812||ISS  go_function cation transmembrane transporter activity|GO:0008324||ISS  go_function efflux transmembrane transporter activity|GO:0015562||ISS  product cation efflux family protein / metal tolerance protein, putative (MTPc1)  note cation efflux family protein / metal tolerance protein, putative (MTPc1); FUNCTIONS IN: cation transmembrane transporter activity, efflux transmembrane transporter activity; INVOLVED IN: cation transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: cation efflux family protein (TAIR:AT1G79520.1); Has 5386 Blast hits to 5376 proteins in 1306 species: Archae - 160; Bacteria - 4109; Metazoa - 267; Fungi - 281; Plants - 146; Viruses - 0; Other Eukaryotes - 423 (source: NCBI BLink).  protein_id AT2G47830.2p  transcript_id AT2G47830.2  protein_id AT2G47830.2p  transcript_id AT2G47830.2  
At2g47840	chr2:019594331	0.0	C/19594331-19594957	AT2G47840.1  CDS  gene_syn F17A22.23  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  product tic20 protein-related  note tic20 protein-related; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55710.1); Has 272 Blast hits to 272 proteins in 73 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).  protein_id AT2G47840.1p  transcript_id AT2G47840.1  protein_id AT2G47840.1p  transcript_id AT2G47840.1  
At2g47844	chr2:019595293	0.0	W/19595293-19595439	AT2G47844.1  CDS  product unknown protein  note unknown protein; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G47844.1p  transcript_id AT2G47844.1  protein_id AT2G47844.1p  transcript_id AT2G47844.1  
At2g47850	chr2:019595953	0.0	W/19595953-19596040,19596133-19596272,19596602-19596664,19596752-19596871,19596947-19597234,19597320-19597628,19597721-19598119	AT2G47850.1  CDS  gene_syn F17A22.24  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc finger (CCCH-type) family protein  note zinc finger (CCCH-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: nucleic acid binding / zinc ion binding (TAIR:AT3G06410.1); Has 1121 Blast hits to 681 proteins in 106 species: Archae - 0; Bacteria - 6; Metazoa - 315; Fungi - 149; Plants - 548; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).  protein_id AT2G47850.1p  transcript_id AT2G47850.1  protein_id AT2G47850.1p  transcript_id AT2G47850.1  
At2g47850	chr2:019595953	0.0	W/19595953-19596040,19596133-19596272,19596602-19596664,19596752-19596871,19596947-19597234,19597320-19597628,19597721-19598119	AT2G47850.3  CDS  gene_syn F17A22.24  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc finger (CCCH-type) family protein  note zinc finger (CCCH-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: nucleic acid binding / zinc ion binding (TAIR:AT3G06410.1); Has 1121 Blast hits to 681 proteins in 106 species: Archae - 0; Bacteria - 6; Metazoa - 315; Fungi - 149; Plants - 548; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).  protein_id AT2G47850.3p  transcript_id AT2G47850.3  protein_id AT2G47850.3p  transcript_id AT2G47850.3  
At2g47850	chr2:019595953	0.0	W/19595953-19596040,19596133-19596272,19596602-19596664,19596752-19596871,19597025-19597234,19597320-19597628,19597721-19598119	AT2G47850.2  CDS  gene_syn F17A22.24  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc finger (CCCH-type) family protein  note zinc finger (CCCH-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: nucleic acid binding / zinc ion binding (TAIR:AT5G18550.1); Has 869 Blast hits to 530 proteins in 92 species: Archae - 0; Bacteria - 8; Metazoa - 200; Fungi - 82; Plants - 502; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT2G47850.2p  transcript_id AT2G47850.2  protein_id AT2G47850.2p  transcript_id AT2G47850.2  
At2g47860	chr2:019599979	0.0	W/19599979-19600073,19600137-19600203,19600273-19601439,19601510-19602088	AT2G47860.1  CDS  gene_syn F17A22.25  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to light stimulus|GO:0009416||IEA  go_function signal transducer activity|GO:0004871||IEA  go_function protein binding|GO:0005515||IEA  go_process response to light stimulus|GO:0009416||ISS  go_function signal transducer activity|GO:0004871||ISS  product phototropic-responsive NPH3 family protein  note phototropic-responsive NPH3 family protein; FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: phototropic-responsive NPH3 family protein (TAIR:AT1G03010.1); Has 432 Blast hits to 418 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 432; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G47860.1p  transcript_id AT2G47860.1  protein_id AT2G47860.1p  transcript_id AT2G47860.1  
At2g47860	chr2:019600465	0.0	W/19600465-19601439,19601510-19602088	AT2G47860.2  CDS  gene_syn F17A22.25  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to light stimulus|GO:0009416||IEA  go_function signal transducer activity|GO:0004871||IEA  go_process response to light stimulus|GO:0009416||ISS  go_function signal transducer activity|GO:0004871||ISS  product phototropic-responsive NPH3 family protein  note phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249); BEST Arabidopsis thaliana protein match is: phototropic-responsive NPH3 family protein (TAIR:AT1G03010.1); Has 414 Blast hits to 406 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 414; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G47860.2p  transcript_id AT2G47860.2  protein_id AT2G47860.2p  transcript_id AT2G47860.2  
At2g47870	chr2:019603339	0.0	W/19603339-19603650	AT2G47870.1  CDS  gene_syn T9J23.11  go_component endomembrane system|GO:0012505||IEA  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  product glutaredoxin family protein  note glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutaredoxin active site (InterPro:IPR011767), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin family protein (TAIR:AT3G62950.1); Has 831 Blast hits to 829 proteins in 177 species: Archae - 0; Bacteria - 69; Metazoa - 201; Fungi - 116; Plants - 421; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT2G47870.1p  transcript_id AT2G47870.1  protein_id AT2G47870.1p  transcript_id AT2G47870.1  
At2g47880	chr2:019605124	0.0	W/19605124-19605432	AT2G47880.1  CDS  gene_syn T9J23.13  go_component endomembrane system|GO:0012505||IEA  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  go_function arsenate reductase (glutaredoxin) activity|GO:0008794||ISS  product glutaredoxin family protein  note glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutaredoxin active site (InterPro:IPR011767), Glutaredoxin subgroup (InterPro:IPR014025), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin family protein (TAIR:AT3G62960.1); Has 804 Blast hits to 803 proteins in 162 species: Archae - 0; Bacteria - 61; Metazoa - 203; Fungi - 79; Plants - 416; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT2G47880.1p  transcript_id AT2G47880.1  protein_id AT2G47880.1p  transcript_id AT2G47880.1  
At2g47890	chr2:019608245	0.0	W/19608245-19608715,19608794-19608955,19609039-19609310,19609383-19609476	AT2G47890.1  CDS  gene_syn F17A22.28  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (B-box type) family protein  note zinc finger (B-box type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: stem, inflorescence meristem, flower, root, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: zinc finger (B-box type) family protein (TAIR:AT2G33500.2); Has 1962 Blast hits to 1279 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1887; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT2G47890.1p  transcript_id AT2G47890.1  protein_id AT2G47890.1p  transcript_id AT2G47890.1  
At2g47890	chr2:019608245	0.0	W/19608245-19608715,19608794-19609036	AT2G47890.2  CDS  gene_syn F17A22.28  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (B-box type) family protein  note zinc finger (B-box type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: stem, inflorescence meristem, flower, root, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: zinc finger (B-box type) family protein (TAIR:AT2G33500.2); Has 1268 Blast hits to 859 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1217; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT2G47890.2p  transcript_id AT2G47890.2  protein_id AT2G47890.2p  transcript_id AT2G47890.2  
At2g47895	chr2:019610473	0.0	W/19610473-19610962	AT2G47895.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT2G47900  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT2G47895.1  
At2g47900	chr2:019612422	0.0	C/19612422-19612766,19612247-19612334,19612024-19612156,19611767-19611946,19611196-19611670	AT2G47900.1  CDS  gene_syn AtTLP3, F17A22.29, TUBBY LIKE PROTEIN 3  gene AtTLP3  function Member of TLP family  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function phosphoric diester hydrolase activity|GO:0008081||ISS  product AtTLP3 (TUBBY LIKE PROTEIN 3); phosphoric diester hydrolase/ transcription factor  note TUBBY LIKE PROTEIN 3 (AtTLP3); FUNCTIONS IN: transcription factor activity, phosphoric diester hydrolase activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: AtTLP10 (TUBBY LIKE PROTEIN 10); phosphoric diester hydrolase/ transcription factor (TAIR:AT1G25280.1); Has 682 Blast hits to 679 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 293; Fungi - 2; Plants - 304; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT2G47900.1p  transcript_id AT2G47900.1  protein_id AT2G47900.1p  transcript_id AT2G47900.1  
At2g47900	chr2:019612422	0.0	C/19612422-19612766,19612247-19612334,19612024-19612156,19611767-19611946,19611196-19611670	AT2G47900.2  CDS  gene_syn AtTLP3, F17A22.29, TUBBY LIKE PROTEIN 3  gene AtTLP3  function Member of TLP family  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function phosphoric diester hydrolase activity|GO:0008081||ISS  product AtTLP3 (TUBBY LIKE PROTEIN 3); phosphoric diester hydrolase/ transcription factor  note TUBBY LIKE PROTEIN 3 (AtTLP3); FUNCTIONS IN: transcription factor activity, phosphoric diester hydrolase activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: AtTLP10 (TUBBY LIKE PROTEIN 10); phosphoric diester hydrolase/ transcription factor (TAIR:AT1G25280.1); Has 682 Blast hits to 679 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 293; Fungi - 2; Plants - 304; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT2G47900.2p  transcript_id AT2G47900.2  protein_id AT2G47900.2p  transcript_id AT2G47900.2  
At2g47910	chr2:019614741	0.0	W/19614741-19614936,19615015-19615559	AT2G47910.1  CDS  gene_syn CRR6, chlororespiratory reduction 6  gene CRR6  function Encodes a chloroplast thylakoid membrane protein. Required for the assembly/accumulation of the NAD(P)H dehydrogenase complex of the photosynthetic electron transport chain.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast thylakoid membrane|GO:0009535|16648216|IDA  go_process NAD(P)H dehydrogenase complex assembly|GO:0010275|16648216|IMP  go_function molecular_function|GO:0003674||ND  product CRR6 (chlororespiratory reduction 6)  note chlororespiratory reduction 6 (CRR6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: NAD(P)H dehydrogenase complex assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1817 (InterPro:IPR014946); Has 133 Blast hits to 133 proteins in 55 species: Archae - 0; Bacteria - 83; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT2G47910.1p  transcript_id AT2G47910.1  protein_id AT2G47910.1p  transcript_id AT2G47910.1  
At2g47910	chr2:019614963	0.0	W/19614963-19615559	AT2G47910.2  CDS  gene_syn CRR6, chlororespiratory reduction 6  gene CRR6  function Encodes a chloroplast thylakoid membrane protein. Required for the assembly/accumulation of the NAD(P)H dehydrogenase complex of the photosynthetic electron transport chain.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|16648216|IDA  go_process NAD(P)H dehydrogenase complex assembly|GO:0010275|16648216|IMP  go_function molecular_function|GO:0003674||ND  product CRR6 (chlororespiratory reduction 6)  note chlororespiratory reduction 6 (CRR6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: NAD(P)H dehydrogenase complex assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1817 (InterPro:IPR014946); Has 133 Blast hits to 133 proteins in 55 species: Archae - 0; Bacteria - 83; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT2G47910.2p  transcript_id AT2G47910.2  protein_id AT2G47910.2p  transcript_id AT2G47910.2  
At2g47920	chr2:019616003	0.0	W/19616003-19616093,19616175-19616761	AT2G47920.1  CDS  gene_syn F17A22.31, F17A22_31  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kinase interacting family protein  note kinase interacting family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: KIP1-like (InterPro:IPR011684); BEST Arabidopsis thaliana protein match is: kinase interacting family protein (TAIR:AT1G03470.2); Has 168 Blast hits to 168 proteins in 24 species: Archae - 2; Bacteria - 4; Metazoa - 3; Fungi - 2; Plants - 153; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G47920.1p  transcript_id AT2G47920.1  protein_id AT2G47920.1p  transcript_id AT2G47920.1  
At2g47930	chr2:019617219	0.0	C/19617219-19617629	AT2G47930.1  CDS  gene_syn AGP26, ARABIDOPSIS THALIANA ARABINOGALACTAN PROTEIN 26, ARABINOGALACTAN PROTEIN 26, ATAGP26, T9J23.8, T9J23_8  gene AGP26  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product AGP26 (ARABINOGALACTAN PROTEIN 26)  note ARABINOGALACTAN PROTEIN 26 (AGP26); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1560 Blast hits to 376 proteins in 91 species: Archae - 2; Bacteria - 52; Metazoa - 102; Fungi - 48; Plants - 148; Viruses - 60; Other Eukaryotes - 1148 (source: NCBI BLink).  protein_id AT2G47930.1p  transcript_id AT2G47930.1  protein_id AT2G47930.1p  transcript_id AT2G47930.1  
At2g47940	chr2:019621982	0.0	C/19621982-19622164,19621772-19621894,19621656-19621706,19621507-19621580,19621356-19621419,19621223-19621267,19620931-19621038,19620589-19620666,19620441-19620507,19620208-19620266,19620024-19620123,19619836-19619915,19619657-19619713,19619446-19619549,19619280-19619367,19619108-19619193,19618980-19619004,19618827-19618898,19618372-19618728	AT2G47940.2  CDS  gene_syn DEGP2  gene DEGP2  function Encodes DegP2 protease (DEGP2); nuclear gene for chloroplast product.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stromal thylakoid|GO:0009533|11179216|IDA  go_component chloroplast thylakoid membrane|GO:0009535|11179216|IDA  go_process proteolysis|GO:0006508||ISS  go_process photosystem II repair|GO:0010206|11717304|IDA  go_function serine-type endopeptidase activity|GO:0004252|11179216|IDA  go_function serine-type peptidase activity|GO:0008236||ISS  product DEGP2; serine-type endopeptidase/ serine-type peptidase  note DEGP2; FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: photosystem II repair, proteolysis; LOCATED IN: chloroplast thylakoid membrane, chloroplast stromal thylakoid, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine endopeptidase DegP2 (InterPro:IPR015724), Peptidase, trypsin-like serine and cysteine (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1 and S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DegP9 (DegP protease 9); catalytic/ protein binding / serine-type endopeptidase/ serine-type peptidase (TAIR:AT5G40200.1); Has 9936 Blast hits to 9930 proteins in 1370 species: Archae - 52; Bacteria - 5840; Metazoa - 255; Fungi - 12; Plants - 189; Viruses - 0; Other Eukaryotes - 3588 (source: NCBI BLink).  protein_id AT2G47940.2p  transcript_id AT2G47940.2  protein_id AT2G47940.2p  transcript_id AT2G47940.2  
At2g47940	chr2:019621982	0.0	C/19621982-19622164,19621772-19621897,19621656-19621706,19621507-19621580,19621356-19621419,19621223-19621267,19620931-19621038,19620589-19620666,19620441-19620507,19620208-19620266,19620024-19620123,19619836-19619915,19619657-19619713,19619446-19619549,19619280-19619367,19619108-19619193,19618980-19619004,19618827-19618898,19618372-19618728	AT2G47940.1  CDS  gene_syn DEGP2  gene DEGP2  function Encodes DegP2 protease (DEGP2); nuclear gene for chloroplast product.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast stromal thylakoid|GO:0009533|11179216|IDA  go_component chloroplast thylakoid membrane|GO:0009535|11179216|IDA  go_process proteolysis|GO:0006508||ISS  go_process photosystem II repair|GO:0010206|11717304|IDA  go_function serine-type endopeptidase activity|GO:0004252|11179216|IDA  go_function serine-type peptidase activity|GO:0008236||ISS  product DEGP2; serine-type endopeptidase/ serine-type peptidase  note DEGP2; FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: photosystem II repair, proteolysis; LOCATED IN: chloroplast thylakoid membrane, chloroplast stromal thylakoid, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase, trypsin-like serine and cysteine (InterPro:IPR009003), Serine endopeptidase DegP2 (InterPro:IPR015724), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1 and S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DegP9 (DegP protease 9); catalytic/ protein binding / serine-type endopeptidase/ serine-type peptidase (TAIR:AT5G40200.1); Has 9834 Blast hits to 9828 proteins in 1366 species: Archae - 52; Bacteria - 5739; Metazoa - 253; Fungi - 12; Plants - 189; Viruses - 0; Other Eukaryotes - 3589 (source: NCBI BLink).  protein_id AT2G47940.1p  transcript_id AT2G47940.1  protein_id AT2G47940.1p  transcript_id AT2G47940.1  
At2g47950	chr2:019624280	0.0	W/19624280-19624666	AT2G47950.1  CDS  gene_syn T9J23.9, T9J23_9  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower, root; EXPRESSED DURING: petal differentiation and expansion stage; Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G47950.1p  transcript_id AT2G47950.1  protein_id AT2G47950.1p  transcript_id AT2G47950.1  
At2g47960	chr2:019625631	0.0	W/19625631-19625920,19626037-19626121,19626403-19626533,19626612-19626714,19626814-19626828,19627234-19627373,19627471-19627678,19628039-19628113,19628210-19628326,19628519-19628563,19628639-19628737,19628849-19628869	AT2G47960.1  CDS  gene_syn F17A22.35  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF974 (InterPro:IPR010378); Has 215 Blast hits to 214 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi - 46; Plants - 18; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT2G47960.1p  transcript_id AT2G47960.1  protein_id AT2G47960.1p  transcript_id AT2G47960.1  
At2g47970	chr2:019629525	0.0	W/19629525-19630511,19630719-19630973	AT2G47970.1  CDS  gene_syn T9J23.1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NPL4 family protein  note NPL4 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPL4 (InterPro:IPR007717); BEST Arabidopsis thaliana protein match is: NPL41 (NPL4-LIKE PROTEIN 1) (TAIR:AT3G63000.1); Has 289 Blast hits to 289 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 76; Plants - 36; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT2G47970.1p  transcript_id AT2G47970.1  protein_id AT2G47970.1p  transcript_id AT2G47970.1  
At2g47970	chr2:019629525	0.0	W/19629525-19630589	AT2G47970.2  CDS  gene_syn T9J23.1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NPL4 family protein  note NPL4 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPL4 (InterPro:IPR007717); BEST Arabidopsis thaliana protein match is: NPL41 (NPL4-LIKE PROTEIN 1) (TAIR:AT3G63000.1); Has 272 Blast hits to 272 proteins in 128 species: Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 68; Plants - 36; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT2G47970.2p  transcript_id AT2G47970.2  protein_id AT2G47970.2p  transcript_id AT2G47970.2  
At2g47980	chr2:019631423	0.0	W/19631423-19631446,19631522-19631708,19631847-19631959,19632070-19632162,19632256-19632419,19632492-19632728,19632866-19633010,19633099-19633277,19633373-19633518,19633605-19633732,19633841-19634017,19634254-19634415,19634508-19634708,19634784-19634921,19635006-19635200,19635316-19635460,19635551-19635657,19635773-19635910,19635982-19636247,19636332-19636456,19636569-19636795	AT2G47980.1  CDS  gene_syn ATSCC3, SCC3, SISTER-CHROMATID COHESION PROTEIN 3, T9J23.3  gene SCC3  function Essential to the monopolar orientation of the kinetochores during meiosis.  go_function binding|GO:0005488||IEA  go_component nucleus|GO:0005634|16176934|IDA  go_component chromosome|GO:0005694|16176934|IDA  go_process mitosis|GO:0007067|16176934|IMP  go_process attachment of spindle microtubules to kinetochore during meiosis I|GO:0051455|16176934|IMP  go_process meiotic sister chromatid cohesion, centromeric|GO:0051754|16176934|IMP  product SCC3 (SISTER-CHROMATID COHESION PROTEIN 3); binding  note SISTER-CHROMATID COHESION PROTEIN 3 (SCC3); FUNCTIONS IN: binding; INVOLVED IN: attachment of spindle microtubules to kinetochore during meiosis I, mitosis, meiotic sister chromatid cohesion, centromeric; LOCATED IN: chromosome, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), STAG (InterPro:IPR013721); Has 429 Blast hits to 427 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 279; Fungi - 90; Plants - 23; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT2G47980.1p  transcript_id AT2G47980.1  protein_id AT2G47980.1p  transcript_id AT2G47980.1  
At2g47990	chr2:019637010	0.0	C/19637010-19638602	AT2G47990.1  CDS  gene_syn EDA13, EDA19, EMBRYO SAC DEVELOPMENT ARREST 13, EMBRYO SAC DEVELOPMENT ARREST 19, SLOW WALKER1, SWA1, T9J23.30  gene SWA1  function Encodes a transducin family nucleolar protein with six WD40 repeats that is most likely involved in 18S rRNA biogenesis. The slow progression of the gametophytic division cycles in swa1 suggested that the SWA1 protein is required for the normal progression of mitotic division cycles through the regulation of cell metabolism. Ubiquitously expressed throughout the plant.  go_component nucleolus|GO:0005730|15980260|IDA  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process rRNA processing|GO:0006364|15980260|IMP  go_process embryo sac development|GO:0009553|15634699|IMP  go_process megagametogenesis|GO:0009561|15634699|IMP  go_function nucleotide binding|GO:0000166||ISS  product SWA1 (SLOW WALKER1); nucleotide binding  note SLOW WALKER1 (SWA1); FUNCTIONS IN: nucleotide binding; INVOLVED IN: megagametogenesis, embryo sac development, rRNA processing; LOCATED IN: nucleolus, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: VIP3 (vernalization independence 3); nucleotide binding / protein binding (TAIR:AT4G29830.1); Has 24762 Blast hits to 14964 proteins in 490 species: Archae - 30; Bacteria - 3338; Metazoa - 10526; Fungi - 5130; Plants - 2337; Viruses - 6; Other Eukaryotes - 3395 (source: NCBI BLink).  protein_id AT2G47990.1p  transcript_id AT2G47990.1  protein_id AT2G47990.1p  transcript_id AT2G47990.1  
At2g48000	chr2:019640507	0.0	C/19640507-19640791,19639270-19640418	AT2G48000.1  CDS  gene_syn T9J23.15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G30780.1); Has 3169 Blast hits to 1748 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 39; Fungi - 28; Plants - 3023; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT2G48000.1p  transcript_id AT2G48000.1  protein_id AT2G48000.1p  transcript_id AT2G48000.1  
At2g48010	chr2:019641465	0.0	W/19641465-19643318	AT2G48010.1  CDS  gene_syn RECEPTOR-LIKE KINASE IN IN FLOWERS 3, RKF3, T9J23.16  gene RKF3  function receptor-like serine/threonine kinase (RKF3)  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function receptor signaling protein serine/threonine kinase activity|GO:0004702|9687063|ISS  go_function kinase activity|GO:0016301||ISS  product RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3); kinase/ receptor signaling protein serine/threonine kinase  note RECEPTOR-LIKE KINASE IN IN FLOWERS 3 (RKF3); FUNCTIONS IN: receptor signaling protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G11050.1); Has 81136 Blast hits to 80336 proteins in 3035 species: Archae - 46; Bacteria - 6891; Metazoa - 36066; Fungi - 6020; Plants - 18343; Viruses - 358; Other Eukaryotes - 13412 (source: NCBI BLink).  protein_id AT2G48010.1p  transcript_id AT2G48010.1  protein_id AT2G48010.1p  transcript_id AT2G48010.1  
At2g48020	chr2:019644441	0.0	W/19644441-19644575,19644662-19644724,19644801-19644890,19644974-19645033,19645119-19645184,19645259-19645324,19645412-19645487,19645557-19645621,19645700-19645792,19645876-19645956,19646055-19646139,19646220-19646263,19646340-19646402,19646468-19646581,19646646-19646705,19646777-19647007	AT2G48020.1  CDS  gene_syn T9J23.17  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product sugar transporter, putative  note sugar transporter, putative; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, chloroplast, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter, putative (TAIR:AT5G18840.1); Has 20918 Blast hits to 20535 proteins in 1301 species: Archae - 281; Bacteria - 8879; Metazoa - 4687; Fungi - 4388; Plants - 1555; Viruses - 2; Other Eukaryotes - 1126 (source: NCBI BLink).  protein_id AT2G48020.1p  transcript_id AT2G48020.1  protein_id AT2G48020.1p  transcript_id AT2G48020.1  
At2g48020	chr2:019644441	0.0	W/19644441-19644575,19644662-19644724,19644801-19644890,19644974-19645033,19645119-19645184,19645259-19645324,19645412-19645487,19645557-19645621,19645700-19645792,19645876-19645956,19646055-19646139,19646220-19646263,19646340-19646402,19646468-19646581,19646646-19646705,19646777-19647007	AT2G48020.2  CDS  gene_syn T9J23.17  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product sugar transporter, putative  note sugar transporter, putative; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, chloroplast, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter, putative (TAIR:AT5G18840.1); Has 20918 Blast hits to 20535 proteins in 1301 species: Archae - 281; Bacteria - 8879; Metazoa - 4687; Fungi - 4388; Plants - 1555; Viruses - 2; Other Eukaryotes - 1126 (source: NCBI BLink).  protein_id AT2G48020.2p  transcript_id AT2G48020.2  protein_id AT2G48020.2p  transcript_id AT2G48020.2  
At2g48030	chr2:019649297	0.0	C/19649297-19649988,19648449-19648656,19648204-19648333,19647834-19648120	AT2G48030.1  CDS  gene_syn T9J23.18  go_component mitochondrion|GO:0005739||IEA  go_function hydrolase activity|GO:0016787||ISS  product endonuclease/exonuclease/phosphatase family protein  note endonuclease/exonuclease/phosphatase family protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein (TAIR:AT3G21530.1); Has 229 Blast hits to 229 proteins in 95 species: Archae - 0; Bacteria - 176; Metazoa - 1; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT2G48030.1p  transcript_id AT2G48030.1  protein_id AT2G48030.1p  transcript_id AT2G48030.1  
At2g48060	chr2:019662338	0.0	C/19662338-19662386,19661935-19662015,19661517-19661676,19661274-19661431,19661003-19661159,19660732-19660918,19660345-19660460,19659858-19659942,19659542-19659757,19659280-19659388,19658781-19658909,19658502-19658675,19658121-19658354,19656333-19657880,19653742-19656221,19653262-19653657,19652993-19653151,19652256-19652765,19652013-19652163,19651794-19651872,19651560-19651704	AT2G48060.1  CDS  gene_syn T9J23.21  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm cell; Has 17 Blast hits to 17 proteins in 8 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G48060.1p  transcript_id AT2G48060.1  protein_id AT2G48060.1p  transcript_id AT2G48060.1  
At2g48070	chr2:019662863	0.0	W/19662863-19663048,19663195-19663405,19663488-19663657,19663747-19663773	AT2G48070.1  CDS  gene_syn RESISTANCE TO PHYTOPHTHORA 1, RPH1, T9J23.22  gene RPH1  function Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastid|GO:0009536|19170932|IDA  go_process defense response to oomycetes|GO:0002229|19170932|IMP  go_process positive regulation of hydrogen peroxide biosynthetic process|GO:0010729|19170932|IMP  go_function molecular_function|GO:0003674||ND  product RPH1 (RESISTANCE TO PHYTOPHTHORA 1)  note RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 22 Blast hits to 22 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G48070.1p  transcript_id AT2G48070.1  protein_id AT2G48070.1p  transcript_id AT2G48070.1  
At2g48070	chr2:019662863	0.0	W/19662863-19663048,19663195-19663405,19663488-19663657,19663747-19663773	AT2G48070.2  CDS  gene_syn RESISTANCE TO PHYTOPHTHORA 1, RPH1, T9J23.22  gene RPH1  function Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastid|GO:0009536|19170932|IDA  go_process defense response to oomycetes|GO:0002229|19170932|IMP  go_process positive regulation of hydrogen peroxide biosynthetic process|GO:0010729|19170932|IMP  go_function molecular_function|GO:0003674||ND  product RPH1 (RESISTANCE TO PHYTOPHTHORA 1)  note RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 22 Blast hits to 22 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT2G48070.2p  transcript_id AT2G48070.2  protein_id AT2G48070.2p  transcript_id AT2G48070.2  
At2g48075	chr2:019664143	0.0	C/19664143-19664622	AT2G48075.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63050.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G48075.1p  transcript_id AT2G48075.1  protein_id AT2G48075.1p  transcript_id AT2G48075.1  
At2g48080	chr2:019666610	0.0	C/19666610-19667092,19666235-19666352,19666046-19666147,19665850-19665959,19665611-19665765,19665192-19665540	AT2G48080.1  CDS  gene_syn T9J23.23  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon, root; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G02940.1); Has 101 Blast hits to 96 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 22; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT2G48080.1p  transcript_id AT2G48080.1  protein_id AT2G48080.1p  transcript_id AT2G48080.1  
At2g48090	chr2:019669220	0.0	C/19669220-19669729	AT2G48090.1  CDS  gene_syn T9J23.24  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, flower, root, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G48090.1p  transcript_id AT2G48090.1  protein_id AT2G48090.1p  transcript_id AT2G48090.1  
At2g48100	chr2:019671245	0.0	W/19671245-19671285,19671385-19671542,19671636-19671775,19671919-19672115,19672192-19672380,19672450-19672530,19672619-19672847	AT2G48100.1  CDS  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function exonuclease activity|GO:0004527||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component intracellular|GO:0005622||ISS  go_process biological_process|GO:0008150||ND  go_function exonuclease activity|GO:0004527||ISS  product exonuclease family protein  note exonuclease family protein; FUNCTIONS IN: exonuclease activity, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T and DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: exonuclease family protein (TAIR:AT5G40310.1); Has 1165 Blast hits to 1165 proteins in 166 species: Archae - 0; Bacteria - 10; Metazoa - 634; Fungi - 294; Plants - 142; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT2G48100.1p  transcript_id AT2G48100.1  protein_id AT2G48100.1p  transcript_id AT2G48100.1  
At2g48100	chr2:019671245	0.0	W/19671245-19671285,19671385-19671542,19671636-19671775,19671919-19672115,19672192-19672380,19672450-19672530,19672619-19672847	AT2G48100.2  CDS  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function exonuclease activity|GO:0004527||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component intracellular|GO:0005622||ISS  go_process biological_process|GO:0008150||ND  go_function exonuclease activity|GO:0004527||ISS  product exonuclease family protein  note exonuclease family protein; FUNCTIONS IN: zinc ion binding, exonuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T and DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: exonuclease family protein (TAIR:AT5G40310.1); Has 1165 Blast hits to 1165 proteins in 166 species: Archae - 0; Bacteria - 10; Metazoa - 634; Fungi - 294; Plants - 142; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT2G48100.2p  transcript_id AT2G48100.2  protein_id AT2G48100.2p  transcript_id AT2G48100.2  
At2g48100	chr2:019671245	0.0	W/19671245-19671285,19671385-19671542,19671636-19671775,19671919-19672115,19672192-19672380,19672450-19672530,19672619-19672847	AT2G48100.3  CDS  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function exonuclease activity|GO:0004527||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component intracellular|GO:0005622||ISS  go_process biological_process|GO:0008150||ND  go_function exonuclease activity|GO:0004527||ISS  product exonuclease family protein  note exonuclease family protein; FUNCTIONS IN: exonuclease activity, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T and DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: exonuclease family protein (TAIR:AT5G40310.1); Has 1165 Blast hits to 1165 proteins in 166 species: Archae - 0; Bacteria - 10; Metazoa - 634; Fungi - 294; Plants - 142; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT2G48100.3p  transcript_id AT2G48100.3  protein_id AT2G48100.3p  transcript_id AT2G48100.3  
At2g48100	chr2:019671245	0.0	W/19671245-19671285,19671385-19671542,19671636-19671775,19671919-19672115,19672192-19672384	AT2G48100.4  CDS  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component intracellular|GO:0005622||ISS  go_process biological_process|GO:0008150||ND  go_function exonuclease activity|GO:0004527||ISS  product exonuclease family protein  note exonuclease family protein; FUNCTIONS IN: exonuclease activity, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T and DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: exonuclease/ nucleic acid binding / zinc ion binding (TAIR:AT3G27970.1); Has 835 Blast hits to 835 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 476; Fungi - 185; Plants - 125; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT2G48100.4p  transcript_id AT2G48100.4  protein_id AT2G48100.4p  transcript_id AT2G48100.4  
At2g48110	chr2:019673370	0.0	W/19673370-19673647,19673844-19673954,19674122-19674466,19674769-19674935,19675041-19675132,19675212-19675268,19675437-19675795,19675870-19675929,19676216-19676302,19676550-19676664,19676802-19676963,19677059-19677719,19677904-19678110,19678368-19679494	AT2G48110.1  CDS  gene_syn F11L15.1, REDUCED EPIDERMAL FLUORESCENCE 4, REF4, T9J23.25  gene REF4  function Encodes a novel protein of unknown function with homologs in non-seed plants. Sequence analysis predicts membrane spanning domains and a putative protein-protein interaction domain. Semi-dominant mutations display defects in phenylpropanoid accumulation suggesting a role in phenylpropanoid metabolism.  go_component membrane|GO:0016020|18430946|TAS  go_process phenylpropanoid metabolic process|GO:0009698|18430946|IMP  product REF4 (REDUCED EPIDERMAL FLUORESCENCE 4)  note REDUCED EPIDERMAL FLUORESCENCE 4 (REF4); INVOLVED IN: phenylpropanoid metabolic process; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: RFR1 (REF4-related 1) (TAIR:AT3G23590.1); Has 70 Blast hits to 68 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT2G48110.1p  transcript_id AT2G48110.1  protein_id AT2G48110.1p  transcript_id AT2G48110.1  
At2g48120	chr2:019679870	0.0	W/19679870-19679975,19680054-19680130,19680201-19680395,19680471-19680557,19680634-19680684,19680847-19681026,19681106-19681351	AT2G48120.1  CDS  gene_syn F11L15.2, PAC, PALE CRESS  gene PAC  function The pale cress (pac) mutant affects chloroplast and leaf development; mutants are ABA-deficient and accumulate lower levels of carotenoids and chlorophyll compared to wild type. PAC is probably involved in chloroplast mRNA maturation. Three alternative transcripts of this gene exist.  go_component amyloplast|GO:0009501|10350211|IDA  go_component chloroplast|GO:0009507|9648738|IDA  go_component chromoplast|GO:0009509|10350211|IDA  go_component etioplast|GO:0009513|10350211|IDA  go_component proplastid|GO:0009537|10350211|IDA  go_process chloroplast organization|GO:0009658|7919990|IMP  go_process leaf morphogenesis|GO:0009965|7919990|IMP  go_process chloroplast mRNA processing|GO:0010239|9648738|IMP  go_process carotenoid biosynthetic process|GO:0016117||IMP  go_function molecular_function|GO:0003674||ND  product PAC (PALE CRESS)  note PALE CRESS (PAC); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: chloroplast organization, carotenoid biosynthetic process, chloroplast mRNA processing, leaf morphogenesis; LOCATED IN: amyloplast, etioplast, chloroplast, proplastid, chromoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 484 Blast hits to 457 proteins in 96 species: Archae - 0; Bacteria - 8; Metazoa - 280; Fungi - 47; Plants - 30; Viruses - 9; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT2G48120.1p  transcript_id AT2G48120.1  protein_id AT2G48120.1p  transcript_id AT2G48120.1  
At2g48120	chr2:019679870	0.0	W/19679870-19679975,19680054-19680130,19680219-19680395,19680471-19680557,19680634-19680684,19680847-19681026,19681106-19681351	AT2G48120.2  CDS  gene_syn F11L15.2, PAC, PALE CRESS  gene PAC  function The pale cress (pac) mutant affects chloroplast and leaf development; mutants are ABA-deficient and accumulate lower levels of carotenoids and chlorophyll compared to wild type. PAC is probably involved in chloroplast mRNA maturation. Three alternative transcripts of this gene exist.  go_component amyloplast|GO:0009501|10350211|IDA  go_component chloroplast|GO:0009507|9648738|IDA  go_component chromoplast|GO:0009509|10350211|IDA  go_component etioplast|GO:0009513|10350211|IDA  go_component proplastid|GO:0009537|10350211|IDA  go_process chloroplast organization|GO:0009658|7919990|IMP  go_process leaf morphogenesis|GO:0009965|7919990|IMP  go_process chloroplast mRNA processing|GO:0010239|9648738|IMP  go_process carotenoid biosynthetic process|GO:0016117||IMP  go_function molecular_function|GO:0003674||ND  product PAC (PALE CRESS)  note PALE CRESS (PAC); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: chloroplast organization, carotenoid biosynthetic process, chloroplast mRNA processing, leaf morphogenesis; LOCATED IN: amyloplast, etioplast, chloroplast, proplastid, chromoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 270 Blast hits to 266 proteins in 59 species: Archae - 0; Bacteria - 10; Metazoa - 168; Fungi - 29; Plants - 24; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT2G48120.2p  transcript_id AT2G48120.2  protein_id AT2G48120.2p  transcript_id AT2G48120.2  
At2g48130	chr2:019685653	0.0	C/19685653-19685977,19685479-19685577,19685263-19685390	AT2G48130.1  CDS  gene_syn F11L15.3  go_process lipid transport|GO:0006869||IEA  go_function lipid binding|GO:0008289||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to membrane; EXPRESSED IN: hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT3G22600.1); Has 761 Blast hits to 757 proteins in 56 species: Archae - 0; Bacteria - 6; Metazoa - 1; Fungi - 0; Plants - 752; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT2G48130.1p  transcript_id AT2G48130.1  protein_id AT2G48130.1p  transcript_id AT2G48130.1  
At2g48140	chr2:019686442	0.0	W/19686442-19686766,19686848-19686874,19687109-19687165,19687251-19687444	AT2G48140.1  CDS  gene_syn EDA4, F11L15.4, embryo sac development arrest 4  gene EDA4  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process lipid transport|GO:0006869||ISS  go_process megagametogenesis|GO:0009561|15634699|IMP  go_function lipid binding|GO:0008289||ISS  product EDA4 (embryo sac development arrest 4); lipid binding  note embryo sac development arrest 4 (EDA4); FUNCTIONS IN: lipid binding; INVOLVED IN: megagametogenesis, lipid transport; LOCATED IN: anchored to membrane; EXPRESSED IN: embryo, hypocotyl, flower, root; EXPRESSED DURING: C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP)-related (TAIR:AT1G05450.2); Has 338 Blast hits to 323 proteins in 48 species: Archae - 0; Bacteria - 34; Metazoa - 23; Fungi - 2; Plants - 261; Viruses - 2; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT2G48140.1p  transcript_id AT2G48140.1  protein_id AT2G48140.1p  transcript_id AT2G48140.1  
At2g48150	chr2:019689046	0.0	C/19689046-19689099,19688869-19688945,19688740-19688801,19688531-19688649,19688225-19688392,19688109-19688141	AT2G48150.1  CDS  gene_syn ATGPX4, F11L15.5, GLUTATHIONE PEROXIDASE 4  gene ATGPX4  function Encodes glutathione peroxidase.  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function glutathione peroxidase activity|GO:0004602||IEA  go_component cytosol|GO:0005829|14617062|NAS  go_function glutathione peroxidase activity|GO:0004602||ISS  product ATGPX4 (GLUTATHIONE PEROXIDASE 4); glutathione peroxidase  note GLUTATHIONE PEROXIDASE 4 (ATGPX4); FUNCTIONS IN: glutathione peroxidase activity; INVOLVED IN: response to oxidative stress, N-terminal protein myristoylation; LOCATED IN: cytosol; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336), Glutathione peroxidase (InterPro:IPR000889); BEST Arabidopsis thaliana protein match is: ATGPX5 (glutathione peroxidase 5); glutathione peroxidase (TAIR:AT3G63080.1); Has 5296 Blast hits to 5295 proteins in 1006 species: Archae - 0; Bacteria - 1887; Metazoa - 681; Fungi - 136; Plants - 239; Viruses - 8; Other Eukaryotes - 2345 (source: NCBI BLink).  protein_id AT2G48150.1p  transcript_id AT2G48150.1  protein_id AT2G48150.1p  transcript_id AT2G48150.1  
At2g48160	chr2:019696462	0.0	C/19696462-19696584,19695988-19696064,19693351-19695345,19692447-19692879,19691868-19691976,19691667-19691779,19691416-19691600,19690837-19691332,19690357-19690744,19690098-19690247,19689784-19689815	AT2G48160.1  CDS  gene_syn F11L15.11, F11L15_11  product unknown protein  note EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Regulation of nuclear pre-mRNA protein (InterPro:IPR006569), PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: PWWP domain-containing protein (TAIR:AT3G63070.1); Has 1292 Blast hits to 1135 proteins in 175 species: Archae - 2; Bacteria - 174; Metazoa - 679; Fungi - 194; Plants - 113; Viruses - 2; Other Eukaryotes - 128 (source: NCBI BLink).  protein_id AT2G48160.1p  transcript_id AT2G48160.1  protein_id AT2G48160.1p  transcript_id AT2G48160.1  >Feature ref|NC_003074|  
At3g01015	chr3:000003203	0.0	C/3203-4017,3064-3109,2885-2977,2690-2809,2428-2526,2223-2282,2048-2142,1798-1936	AT3G01015.1  CDS  gene_syn TEL3N.1, TEL3N_1  product unknown protein  note EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, F mature embryo stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Targeting for Xklp2 (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G15510.1); Has 341 Blast hits to 320 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 12; Plants - 165; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT3G01015.1p  transcript_id AT3G01015.1  protein_id AT3G01015.1p  transcript_id AT3G01015.1  
At3g01010	chr3:000004342	0.0	W/4342-4818	AT3G01010.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_process biological_process|GO:0008150||ND  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||ISS  product UDP-glucose/GDP-mannose dehydrogenase family protein  note UDP-glucose/GDP-mannose dehydrogenase family protein; FUNCTIONS IN: NAD or NADH binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding (InterPro:IPR014028), UDP-glucose/GDP-mannose dehydrogenase, C-terminal (InterPro:IPR014027); BEST Arabidopsis thaliana protein match is: UDP-glucose 6-dehydrogenase, putative (TAIR:AT5G15490.1); Has 3233 Blast hits to 3228 proteins in 773 species: Archae - 67; Bacteria - 1558; Metazoa - 169; Fungi - 55; Plants - 100; Viruses - 0; Other Eukaryotes - 1284 (source: NCBI BLink).  protein_id AT3G01010.1p  transcript_id AT3G01010.1  protein_id AT3G01010.1p  transcript_id AT3G01010.1  
At3g01020	chr3:000005139	0.0	W/5139-5427,5536-5590,5746-5893	AT3G01020.1  CDS  gene_syn ATISU2, ISCU-LIKE 2, ISU2, T4P13.30, T4P13_30  gene ISU2  function Encodes a mitochondrial protein similar to E.coli IscU. In bacteria, IscU is a scaffold protein accepting sulfur and iron to build a transient Fe-S cluster,which is subsequently transferred to a target apoprotein.  go_component mitochondrion|GO:0005739|15792798|IDA  go_process iron-sulfur cluster assembly|GO:0016226|15792798|IGI  go_process iron-sulfur cluster assembly|GO:0016226||ISS  go_function structural molecule activity|GO:0005198|15792798|ISS  product ISU2 (ISCU-LIKE 2); structural molecule  note ISCU-LIKE 2 (ISU2); FUNCTIONS IN: structural molecule activity; INVOLVED IN: iron-sulfur cluster assembly; LOCATED IN: mitochondrion; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NIF system FeS cluster assembly, NifU, N-terminal (InterPro:IPR002871), ISC system FeS cluster assembly, IscU scaffold (InterPro:IPR011339); BEST Arabidopsis thaliana protein match is: ISU1; structural molecule (TAIR:AT4G22220.1); Has 3609 Blast hits to 3609 proteins in 1075 species: Archae - 68; Bacteria - 1955; Metazoa - 117; Fungi - 106; Plants - 54; Viruses - 0; Other Eukaryotes - 1309 (source: NCBI BLink).  protein_id AT3G01020.1p  transcript_id AT3G01020.1  protein_id AT3G01020.1p  transcript_id AT3G01020.1  
At3g01030	chr3:000006657	0.0	W/6657-7772	AT3G01030.1  CDS  gene_syn T4P13.29, T4P13_29  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product nucleic acid binding / transcription factor/ zinc ion binding  note nucleic acid binding / transcription factor/ zinc ion binding; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT5G15480.1); Has 52 Blast hits to 52 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G01030.1p  transcript_id AT3G01030.1  protein_id AT3G01030.1p  transcript_id AT3G01030.1  
At3g01040	chr3:000009392	0.0	W/9392-9602,10106-10161,10265-10423,10507-11097,11302-11604,11698-11979	AT3G01040.1  CDS  gene_syn GAUT13, Galacturonosyltransferase 13, T4P13.28, T4P13_28  gene GAUT13  function Encodes a protein with putative galacturonosyltransferase activity.  go_component cellular_component|GO:0005575||ND  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS  product GAUT13 (Galacturonosyltransferase 13); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note Galacturonosyltransferase 13 (GAUT13); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: GAUT14 (Galacturonosyltransferase 14); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT5G15470.1); Has 857 Blast hits to 851 proteins in 152 species: Archae - 0; Bacteria - 262; Metazoa - 127; Fungi - 4; Plants - 431; Viruses - 2; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT3G01040.1p  transcript_id AT3G01040.1  protein_id AT3G01040.1p  transcript_id AT3G01040.1  
At3g01040	chr3:000009392	0.0	W/9392-9602,10106-10161,10268-10423,10507-11097,11302-11604,11698-11979	AT3G01040.2  CDS  gene_syn GAUT13, Galacturonosyltransferase 13, T4P13.28, T4P13_28  gene GAUT13  function Encodes a protein with putative galacturonosyltransferase activity.  go_component cellular_component|GO:0005575||ND  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS  product GAUT13 (Galacturonosyltransferase 13); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note Galacturonosyltransferase 13 (GAUT13); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: GAUT14 (Galacturonosyltransferase 14); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT5G15470.1); Has 865 Blast hits to 859 proteins in 152 species: Archae - 0; Bacteria - 262; Metazoa - 128; Fungi - 4; Plants - 438; Viruses - 2; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT3G01040.2p  transcript_id AT3G01040.2  protein_id AT3G01040.2p  transcript_id AT3G01040.2  
At3g01050	chr3:000013854	0.0	W/13854-13986,14325-14489,14620-14675	AT3G01050.1  CDS  gene_syn MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 1 PRECURSOR, MUB1, T4P13.27, T4P13_27  gene MUB1  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product MUB1 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 1 PRECURSOR)  note MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 1 PRECURSOR (MUB1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Membrane-anchored ubiquitin-fold protein, HCG-1 (InterPro:IPR017000), Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: MUB2 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 2) (TAIR:AT5G15460.2); Has 96 Blast hits to 96 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G01050.1p  transcript_id AT3G01050.1  protein_id AT3G01050.1p  transcript_id AT3G01050.1  
At3g01060	chr3:000018489	0.0	C/18489-18782,18208-18357,17723-17981,17430-17624,17209-17351,16831-17133	AT3G01060.2  CDS  gene_syn T4P13.26, T4P13_26  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 467 Blast hits to 467 proteins in 132 species: Archae - 0; Bacteria - 209; Metazoa - 0; Fungi - 43; Plants - 30; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink).  protein_id AT3G01060.2p  transcript_id AT3G01060.2  protein_id AT3G01060.2p  transcript_id AT3G01060.2  
At3g01060	chr3:000018489	0.0	C/18489-18782,18208-18357,17723-17981,17430-17648,17209-17351,16831-17133	AT3G01060.1  CDS  gene_syn T4P13.26, T4P13_26  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 469 Blast hits to 469 proteins in 133 species: Archae - 0; Bacteria - 209; Metazoa - 0; Fungi - 45; Plants - 30; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink).  protein_id AT3G01060.1p  transcript_id AT3G01060.1  protein_id AT3G01060.1p  transcript_id AT3G01060.1  
At3g01060	chr3:000018489	0.0	C/18489-18782,18208-18357,17723-17981,17430-17648,17209-17351,17055-17108	AT3G01060.3  CDS  gene_syn T4P13.26, T4P13_26  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 449 Blast hits to 449 proteins in 133 species: Archae - 0; Bacteria - 209; Metazoa - 0; Fungi - 45; Plants - 30; Viruses - 0; Other Eukaryotes - 165 (source: NCBI BLink).  protein_id AT3G01060.3p  transcript_id AT3G01060.3  protein_id AT3G01060.3p  transcript_id AT3G01060.3  
At3g01070	chr3:000019659	0.0	W/19659-19827,20110-20444	AT3G01070.1  CDS  gene_syn T4P13.25, T4P13_25  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function copper ion binding|GO:0005507||ISS  product plastocyanin-like domain-containing protein  note plastocyanin-like domain-containing protein; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, C globular stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: plastocyanin-like domain-containing protein (TAIR:AT5G15350.1); Has 741 Blast hits to 732 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 741; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G01070.1p  transcript_id AT3G01070.1  protein_id AT3G01070.1p  transcript_id AT3G01070.1  
At3g01080	chr3:000025507	0.0	W/25507-25742,25857-25890,26242-26801,26895-27041,27155-27449	AT3G01080.1  CDS  gene_syn AtWRKY58, T4P13.24, T4P13_24, WRKY58  gene WRKY58  function member of WRKY Transcription Factor; Group I  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_process regulation of defense response|GO:0031347|17096590|IMP  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|17096590|IMP  go_function transcription factor activity|GO:0003700||ISS  product WRKY58; transcription factor  note WRKY58; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of defense response; LOCATED IN: nucleus; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY3; transcription factor (TAIR:AT2G03340.1); Has 3412 Blast hits to 1810 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 30; Fungi - 6; Plants - 3326; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT3G01080.1p  transcript_id AT3G01080.1  protein_id AT3G01080.1p  transcript_id AT3G01080.1  
At3g01085	chr3:000028060	0.0	W/28060-28419,28525-28809,28903-29220,29300-29530,29625-29725,29801-29912,29999-30355,30431-30556	AT3G01085.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cdc2cAt (Arabidopsis thaliana cdc2c); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G39420.1); Has 89659 Blast hits to 88472 proteins in 2720 species: Archae - 40; Bacteria - 7447; Metazoa - 39019; Fungi - 8344; Plants - 17529; Viruses - 443; Other Eukaryotes - 16837 (source: NCBI BLink).  protein_id AT3G01085.1p  transcript_id AT3G01085.1  protein_id AT3G01085.1p  transcript_id AT3G01085.1  
At3g01090	chr3:000033788	0.0	C/33788-33977,33479-33663,33194-33376,32970-33101,32668-32853,32487-32576,32294-32377,32083-32220,31761-31997,31437-31550	AT3G01090.1  CDS  gene_syn AKIN10, Arabidopsis SNF1 kinase homolog 10, SNF1-RELATED PROTEIN KINASE, SNF1-RELATED PROTEIN KINASE 1.1, SnRK1.1, T4P13.22, T4P13_22  gene AKIN10  function encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1. It can also interact with PRL1 DWD-containing protein. Based on in vitro degradation assays and cul4cs and prl1 mutants, there is evidence that AKIN10 is degraded in a proteasome-dependent manner, and that this depends on a CUL4-PRL1 E3 ligase  go_component nuclear ubiquitin ligase complex|GO:0000152|11387208|IPI  go_process detection of nutrient|GO:0009594|18931139|IDA  go_function protein kinase activity|GO:0004672|10220464|IDA  go_function protein kinase activity|GO:0004672|11387208|ISS  go_function protein kinase activity|GO:0004672||ISS  go_function protein binding|GO:0005515|10220464|IPI  product AKIN10 (Arabidopsis SNF1 kinase homolog 10); protein binding / protein kinase  note Arabidopsis SNF1 kinase homolog 10 (AKIN10); FUNCTIONS IN: protein binding, protein kinase activity; INVOLVED IN: detection of nutrient; LOCATED IN: nuclear ubiquitin ligase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Kinase-associated KA1 (InterPro:IPR001772), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Snf1-like protein AMPK (InterPro:IPR015741), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: AKIN11 (Arabidopsis SNF1 kinase homolog 11); protein binding / protein kinase (TAIR:AT3G29160.2); Has 97476 Blast hits to 95702 proteins in 3346 species: Archae - 74; Bacteria - 8555; Metazoa - 42275; Fungi - 8813; Plants - 18633; Viruses - 492; Other Eukaryotes - 18634 (source: NCBI BLink).  protein_id AT3G01090.1p  transcript_id AT3G01090.1  protein_id AT3G01090.1p  transcript_id AT3G01090.1  
At3g01090	chr3:000033788	0.0	C/33788-33977,33479-33663,33194-33376,32970-33101,32668-32853,32487-32576,32294-32377,32083-32220,31761-31997,31437-31550	AT3G01090.3  CDS  gene_syn AKIN10, Arabidopsis SNF1 kinase homolog 10, SNF1-RELATED PROTEIN KINASE, SNF1-RELATED PROTEIN KINASE 1.1, SnRK1.1, T4P13.22, T4P13_22  gene AKIN10  function encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1. It can also interact with PRL1 DWD-containing protein. Based on in vitro degradation assays and cul4cs and prl1 mutants, there is evidence that AKIN10 is degraded in a proteasome-dependent manner, and that this depends on a CUL4-PRL1 E3 ligase  go_component nuclear ubiquitin ligase complex|GO:0000152|11387208|IPI  go_process detection of nutrient|GO:0009594|18931139|IDA  go_function protein kinase activity|GO:0004672|10220464|IDA  go_function protein kinase activity|GO:0004672|11387208|ISS  go_function protein kinase activity|GO:0004672||ISS  go_function protein binding|GO:0005515|10220464|IPI  product AKIN10 (Arabidopsis SNF1 kinase homolog 10); protein binding / protein kinase  note Arabidopsis SNF1 kinase homolog 10 (AKIN10); FUNCTIONS IN: protein binding, protein kinase activity; INVOLVED IN: detection of nutrient; LOCATED IN: nuclear ubiquitin ligase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Kinase-associated KA1 (InterPro:IPR001772), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Snf1-like protein AMPK (InterPro:IPR015741), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: AKIN11 (Arabidopsis SNF1 kinase homolog 11); protein binding / protein kinase (TAIR:AT3G29160.2); Has 97476 Blast hits to 95702 proteins in 3346 species: Archae - 74; Bacteria - 8555; Metazoa - 42275; Fungi - 8813; Plants - 18633; Viruses - 492; Other Eukaryotes - 18634 (source: NCBI BLink).  protein_id AT3G01090.3p  transcript_id AT3G01090.3  protein_id AT3G01090.3p  transcript_id AT3G01090.3  
At3g01090	chr3:000034078	0.0	C/34078-34143,33788-33980,33479-33663,33194-33376,32970-33101,32668-32853,32487-32576,32294-32377,32083-32220,31761-31997,31437-31550	AT3G01090.2  CDS  gene_syn AKIN10, Arabidopsis SNF1 kinase homolog 10, SNF1-RELATED PROTEIN KINASE, SNF1-RELATED PROTEIN KINASE 1.1, SnRK1.1, T4P13.22, T4P13_22  gene AKIN10  function encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1. It can also interact with PRL1 DWD-containing protein. Based on in vitro degradation assays and cul4cs and prl1 mutants, there is evidence that AKIN10 is degraded in a proteasome-dependent manner, and that this depends on a CUL4-PRL1 E3 ligase  go_component nuclear ubiquitin ligase complex|GO:0000152|11387208|IPI  go_process detection of nutrient|GO:0009594|18931139|IDA  go_function protein kinase activity|GO:0004672|10220464|IDA  go_function protein kinase activity|GO:0004672|11387208|ISS  go_function protein kinase activity|GO:0004672||ISS  go_function protein binding|GO:0005515|10220464|IPI  product AKIN10 (Arabidopsis SNF1 kinase homolog 10); protein binding / protein kinase  note Arabidopsis SNF1 kinase homolog 10 (AKIN10); FUNCTIONS IN: protein binding, protein kinase activity; INVOLVED IN: detection of nutrient; LOCATED IN: nuclear ubiquitin ligase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Kinase-associated KA1 (InterPro:IPR001772), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Snf1-like protein AMPK (InterPro:IPR015741), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: AKIN11 (Arabidopsis SNF1 kinase homolog 11); protein binding / protein kinase (TAIR:AT3G29160.2); Has 97487 Blast hits to 95713 proteins in 3346 species: Archae - 74; Bacteria - 8555; Metazoa - 42277; Fungi - 8817; Plants - 18634; Viruses - 492; Other Eukaryotes - 18638 (source: NCBI BLink).  protein_id AT3G01090.2p  transcript_id AT3G01090.2  protein_id AT3G01090.2p  transcript_id AT3G01090.2  
At3g01100	chr3:000037893	0.0	C/37893-38176,37667-37816,37515-37578,37220-37429,36950-37138,36576-36874,36214-36490,35810-36127	AT3G01100.2  CDS  gene_syn ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, AT3G01110, ATHYP1, HYP1, HYPOTHETICAL PROTEIN 1, T4P13.21, T4P13_21  gene HYP1  function unknown protein, has cDNAs and ESTs associated to it  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  product HYP1 (HYPOTHETICAL PROTEIN 1)  note HYPOTHETICAL PROTEIN 1 (HYP1); LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69450.1); Has 875 Blast hits to 804 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 157; Fungi - 429; Plants - 243; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT3G01100.2p  transcript_id AT3G01100.2  protein_id AT3G01100.2p  transcript_id AT3G01100.2  
At3g01100	chr3:000037893	0.0	C/37893-38176,37667-37816,37515-37578,37220-37429,36950-37138,36576-36874,36214-36490,35852-36127,35322-35555,35013-35141	AT3G01100.1  CDS  gene_syn ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, AT3G01110, ATHYP1, HYP1, HYPOTHETICAL PROTEIN 1, T4P13.21, T4P13_21  gene HYP1  function unknown protein, has cDNAs and ESTs associated to it  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  product HYP1 (HYPOTHETICAL PROTEIN 1)  note HYPOTHETICAL PROTEIN 1 (HYP1); LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69450.1); Has 902 Blast hits to 823 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 434; Plants - 251; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT3G01100.1p  transcript_id AT3G01100.1  protein_id AT3G01100.1p  transcript_id AT3G01100.1  
At3g01120	chr3:000041319	0.0	C/41319-41865,41136-41239,40944-41017,40668-40836,40508-40567,40224-40427,40043-40129,39857-39964,39674-39769,39464-39582,39234-39357	AT3G01120.1  CDS  gene_syn A. THALIANA CYSTATHIONINE GAMMA-SYNTHASE 1, ATCYS1, CGS, CGS1, CYSTATHIONINE GAMMA-SYNTHASE, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE-GAMMA-SYNTHASE, METHIONINE OVERACCUMULATION 1, MTO1, T4P13.19, T4P13_19  gene MTO1  function encodes a cystathionine gamma-synthase, which performs the first committed step in methionine biosynthesis. A conserved motif of 13 amino acids in the first exon is required for posttranscriptional autoregulation. This enzyme shares the same substrate as threonine synthase (TS) and its absence transcriptionally affects 8 genes in the genome.  go_component chloroplast|GO:0009507|18431481|IDA  go_process methionine biosynthetic process|GO:0009086|12232133|IMP  go_function cystathionine gamma-synthase activity|GO:0003962|7816049|ISS  go_function cystathionine gamma-synthase activity|GO:0003962|9531508|IDA  product MTO1 (METHIONINE OVERACCUMULATION 1); cystathionine gamma-synthase  note METHIONINE OVERACCUMULATION 1 (MTO1); FUNCTIONS IN: cystathionine gamma-synthase activity; INVOLVED IN: methionine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Cys/Met metabolism, pyridoxal phosphate-dependent enzyme (InterPro:IPR000277), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: cystathionine gamma-synthase, chloroplast, putative / O-succinylhomoserine (Thiol)-lyase, putative (TAIR:AT1G33320.1); Has 15255 Blast hits to 14594 proteins in 1335 species: Archae - 132; Bacteria - 6145; Metazoa - 212; Fungi - 543; Plants - 202; Viruses - 12; Other Eukaryotes - 8009 (source: NCBI BLink).  protein_id AT3G01120.1p  transcript_id AT3G01120.1  protein_id AT3G01120.1p  transcript_id AT3G01120.1  
At3g01130	chr3:000045475	0.0	C/45475-45522,45312-45377,44714-44761	AT3G01130.1  CDS  gene_syn T4P13.18, T4P13_18  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G15320.1); Has 37 Blast hits to 37 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G01130.1p  transcript_id AT3G01130.1  protein_id AT3G01130.1p  transcript_id AT3G01130.1  
At3g01130	chr3:000045475	0.0	C/45475-45522,45312-45377,44911-44949	AT3G01130.2  CDS  gene_syn T4P13.18, T4P13_18  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G15320.1).  protein_id AT3G01130.2p  transcript_id AT3G01130.2  protein_id AT3G01130.2p  transcript_id AT3G01130.2  
At3g01142	chr3:000046718	0.0	W/46718-48296	AT3G01142.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT3G01140  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G01142.1  
At3g01140	chr3:000048007	0.0	C/48007-48143,47773-47897,47559-47688,47118-47470,46619-47040	AT3G01140.1  CDS  gene_syn AtMYB106, MYB106, NOK, T4P13.17, T4P13_17, myb domain protein 106  gene MYB106  function Encodes a putative transcription factor that is a member of the MYB family. Loss of function mutations show an increased number of branchpoints in leaf trichomes suggesting a role in negative regulation of trichome branching.  go_process trichome branching|GO:0010091|10572032|IMP  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product MYB106 (myb domain protein 106); DNA binding / transcription factor  note myb domain protein 106 (MYB106); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: trichome branching, regulation of transcription, DNA-dependent; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: ATMYB16 (MYB DOMAIN PROTEIN 16); DNA binding / transcription factor (TAIR:AT5G15310.1); Has 6221 Blast hits to 5835 proteins in 351 species: Archae - 0; Bacteria - 0; Metazoa - 575; Fungi - 303; Plants - 3736; Viruses - 3; Other Eukaryotes - 1604 (source: NCBI BLink).  protein_id AT3G01140.1p  transcript_id AT3G01140.1  protein_id AT3G01140.1p  transcript_id AT3G01140.1  
At3g01150	chr3:000051732	0.0	W/51732-51914,52155-52340,53043-53212,53300-53357,53452-53556,53636-53717,53846-53958,54129-54344	AT3G01150.2  CDS  gene_syn ATPTB1, POLYPYRIMIDINE TRACT-BINDING, POLYPYRIMIDINE TRACT-BINDING PROTEIN 1, PTB, PTB1, T4P13.16, T4P13_16  gene PTB1  function Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process pollen germination|GO:0009846|19122186|IGI  go_function RNA binding|GO:0003723||ISS  product PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1); RNA binding / nucleic acid binding / nucleotide binding  note POLYPYRIMIDINE TRACT-BINDING (PTB); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: pollen germination; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2); RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT5G53180.1); Has 1275 Blast hits to 743 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 979; Fungi - 29; Plants - 161; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).  protein_id AT3G01150.2p  transcript_id AT3G01150.2  protein_id AT3G01150.2p  transcript_id AT3G01150.2  
At3g01150	chr3:000051732	0.0	W/51732-51914,52155-52364,52889-52951,53043-53212,53300-53357,53452-53556,53636-53717,53846-53958,54129-54344	AT3G01150.1  CDS  gene_syn ATPTB1, POLYPYRIMIDINE TRACT-BINDING, POLYPYRIMIDINE TRACT-BINDING PROTEIN 1, PTB, PTB1, T4P13.16, T4P13_16  gene PTB1  function Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process pollen germination|GO:0009846|19122186|IGI  go_function RNA binding|GO:0003723||ISS  product PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1); RNA binding / nucleic acid binding / nucleotide binding  note POLYPYRIMIDINE TRACT-BINDING PROTEIN 1 (PTB1); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: pollen germination; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2); RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT5G53180.1); Has 1430 Blast hits to 756 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 1108; Fungi - 26; Plants - 157; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).  protein_id AT3G01150.1p  transcript_id AT3G01150.1  protein_id AT3G01150.1p  transcript_id AT3G01150.1  
At3g01160	chr3:000056886	0.0	C/56886-57449,56702-56776,56274-56509,56030-56192,55816-55944,55009-55709,54655-54928	AT3G01160.1  CDS  gene_syn T4P13.15, T4P13_15  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 35234 Blast hits to 19107 proteins in 767 species: Archae - 54; Bacteria - 1674; Metazoa - 14725; Fungi - 4288; Plants - 1318; Viruses - 508; Other Eukaryotes - 12667 (source: NCBI BLink).  protein_id AT3G01160.1p  transcript_id AT3G01160.1  protein_id AT3G01160.1p  transcript_id AT3G01160.1  
At3g01170	chr3:000058043	0.0	W/58043-58690	AT3G01170.1  CDS  gene_syn T4P13.14, T4P13_14  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_component chloroplast|GO:0009507||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  product structural constituent of ribosome  note structural constituent of ribosome; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e (InterPro:IPR008195); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT5G15260.1); Has 39 Blast hits to 39 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G01170.1p  transcript_id AT3G01170.1  protein_id AT3G01170.1p  transcript_id AT3G01170.1  
At3g01175	chr3:000059484	0.0	W/59484-60336,60493-60845	AT3G01175.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1666 (InterPro:IPR012870); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT5G39785.2); Has 100 Blast hits to 98 proteins in 28 species: Archae - 0; Bacteria - 8; Metazoa - 5; Fungi - 5; Plants - 48; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT3G01175.1p  transcript_id AT3G01175.1  protein_id AT3G01175.1p  transcript_id AT3G01175.1  
At3g01180	chr3:000065397	0.0	C/65397-65678,64461-65127,64294-64358,64105-64182,63891-64001,63762-63806,63501-63674,62456-63412	AT3G01180.1  CDS  gene_syn AtSS2, T4P13.13, T4P13_13, starch synthase 2  gene AtSS2  go_component chloroplast|GO:0009507|18431481|IDA  go_process glycogen biosynthetic process|GO:0005978||IEA  go_process biosynthetic process|GO:0009058||IEA  go_process glucan biosynthetic process|GO:0009250||IEA  go_process cellulose biosynthetic process|GO:0030244||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product AtSS2 (starch synthase 2); transferase, transferring glycosyl groups  note starch synthase 2 (AtSS2); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: cellulose biosynthetic process, glucan biosynthetic process, biosynthetic process, glycogen biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycogen/starch synthases, ADP-glucose type (InterPro:IPR011835), Starch synthase catalytic region (InterPro:IPR013534), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: SSI1 (SUPPRESSOR OF SALICYLIC ACID INSENSITIVITY 1); starch synthase/ transferase, transferring glycosyl groups (TAIR:AT5G24300.1); Has 12527 Blast hits to 8643 proteins in 2404 species: Archae - 147; Bacteria - 2735; Metazoa - 1166; Fungi - 888; Plants - 3652; Viruses - 25; Other Eukaryotes - 3914 (source: NCBI BLink).  protein_id AT3G01180.1p  transcript_id AT3G01180.1  protein_id AT3G01180.1p  transcript_id AT3G01180.1  
At3g01185	chr3:000066471	0.0	W/66471-66917	AT3G01185.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G21655.1); Has 40 Blast hits to 40 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G01185.1p  transcript_id AT3G01185.1  protein_id AT3G01185.1p  transcript_id AT3G01185.1  
At3g01190	chr3:000068265	0.0	C/68265-68477,67984-68169,67726-67885,67236-67642	AT3G01190.1  CDS  gene_syn T4P13.12, T4P13_12  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase 27 (PER27) (P27) (PRXR7)  note peroxidase 27 (PER27) (P27) (PRXR7); FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT5G15180.1); Has 2705 Blast hits to 2689 proteins in 165 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 24; Plants - 2661; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT3G01190.1p  transcript_id AT3G01190.1  protein_id AT3G01190.1p  transcript_id AT3G01190.1  
At3g01202	chr3:000069854	0.0	W/69854-71415	AT3G01202.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT3G01200  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G01202.1  
At3g01200	chr3:000070962	0.0	C/70962-71348,70072-70711,69826-69932	AT3G01200.1  CDS  gene_syn AtRP2, PPDK regulatory protein 2, T4P13.11, T4P13_11  gene AtRP2  function Encodes a PPDK regulatory protein that has protein kinase activity but lacks protein phosphatase activity towards PPDK (pyruvate orthophosphate dikinase).  go_component cytosol|GO:0005829|17996018|IDA  go_process biological_process|GO:0008150||ND  go_function protein kinase activity|GO:0004672|17996018|IDA  product AtRP2 (PPDK regulatory protein 2); protein kinase  note PPDK regulatory protein 2 (AtRP2); FUNCTIONS IN: protein kinase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate Pi dikinase regulator (InterPro:IPR017409), Protein of unknown function DUF299 (InterPro:IPR005177); BEST Arabidopsis thaliana protein match is: ATRP1 (PPDK REGULATORY PROTEIN); phosphoprotein phosphatase/ protein kinase (TAIR:AT4G21210.1); Has 2890 Blast hits to 2890 proteins in 738 species: Archae - 0; Bacteria - 1595; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 1262 (source: NCBI BLink).  protein_id AT3G01200.1p  transcript_id AT3G01200.1  protein_id AT3G01200.1p  transcript_id AT3G01200.1  
At3g01210	chr3:000072182	0.0	W/72182-72297,72382-72457,72528-72626,72701-73159	AT3G01210.1  CDS  gene_syn T4P13.10, T4P13_10  go_process oxidation reduction|GO:0055114||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function nucleic acid binding|GO:0003676||ISS  product nucleic acid binding / oxidoreductase  note nucleic acid binding / oxidoreductase; FUNCTIONS IN: oxidoreductase activity, nucleic acid binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT1G14340.1); Has 204 Blast hits to 204 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 57; Plants - 134; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT3G01210.1p  transcript_id AT3G01210.1  protein_id AT3G01210.1p  transcript_id AT3G01210.1  
At3g01220	chr3:000073599	0.0	W/73599-73737,73814-74199,74960-75295	AT3G01220.1  CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20, ATHB20, T4P13.9, T4P13_9  gene ATHB20  function Encodes a homeodomain leucine zipper class I (HD-Zip I) protein, its expression is auxin-inducible and dependent on MP gene activity.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to auxin stimulus|GO:0009733|12644682|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20); DNA binding / transcription factor  note ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20 (ATHB20); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to auxin stimulus, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3); DNA binding / sequence-specific DNA binding / transcription factor (TAIR:AT5G15150.1); Has 7839 Blast hits to 7813 proteins in 441 species: Archae - 0; Bacteria - 1; Metazoa - 6169; Fungi - 107; Plants - 1423; Viruses - 4; Other Eukaryotes - 135 (source: NCBI BLink).  protein_id AT3G01220.1p  transcript_id AT3G01220.1  protein_id AT3G01220.1p  transcript_id AT3G01220.1  
At3g01230	chr3:000076937	0.0	C/76937-77317	AT3G01230.1  CDS  gene_syn T4P13.8, T4P13_8  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01240.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G01230.1p  transcript_id AT3G01230.1  protein_id AT3G01230.1p  transcript_id AT3G01230.1  
At3g01240	chr3:000078545	0.0	C/78545-78937	AT3G01240.1  CDS  gene_syn T4P13.7, T4P13_7  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01230.1); Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G01240.1p  transcript_id AT3G01240.1  protein_id AT3G01240.1p  transcript_id AT3G01240.1  
At3g01250	chr3:000079404	0.0	W/79404-79898	AT3G01250.1  CDS  gene_syn T4P13.6, T4P13_6  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 37 Blast hits to 37 proteins in 15 species: Archae - 0; Bacteria - 20; Metazoa - 12; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G01250.1p  transcript_id AT3G01250.1  protein_id AT3G01250.1p  transcript_id AT3G01250.1  
At3g01260	chr3:000081558	0.0	C/81558-82005,81418-81467,81247-81337,81040-81150,80639-80939,80244-80523	AT3G01260.1  CDS  gene_syn T4P13.5, T4P13_5  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process hexose metabolic process|GO:0019318||IEA  go_function catalytic activity|GO:0003824||IEA  go_function isomerase activity|GO:0016853||IEA  go_function carbohydrate binding|GO:0030246||IEA  go_process galactose metabolic process|GO:0006012||ISS  go_function aldose 1-epimerase activity|GO:0004034||ISS  product aldose 1-epimerase/ carbohydrate binding / catalytic/ isomerase  note aldose 1-epimerase/ carbohydrate binding / catalytic/ isomerase; FUNCTIONS IN: carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity; INVOLVED IN: galactose metabolic process, hexose metabolic process, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Aldose 1-epimerase (InterPro:IPR008183), Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Aldose-1-epimerase (InterPro:IPR015443), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718); BEST Arabidopsis thaliana protein match is: aldose 1-epimerase family protein (TAIR:AT5G15140.1); Has 74808 Blast hits to 22876 proteins in 1194 species: Archae - 248; Bacteria - 22115; Metazoa - 10029; Fungi - 5791; Plants - 1924; Viruses - 1283; Other Eukaryotes - 33418 (source: NCBI BLink).  protein_id AT3G01260.1p  transcript_id AT3G01260.1  protein_id AT3G01260.1p  transcript_id AT3G01260.1  
At3g01270	chr3:000084524	0.0	C/84524-84720,83538-84297,83194-83439,82892-83116	AT3G01270.1  CDS  gene_syn T22N4.10, T22N4_10, T4P13.4, T4P13_4  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function lyase activity|GO:0016829||ISS  go_function pectate lyase activity|GO:0030570||ISS  product pectate lyase family protein  note pectate lyase family protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectate lyase, N-terminal (InterPro:IPR007524), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: lyase/ pectate lyase (TAIR:AT5G15110.1); Has 882 Blast hits to 879 proteins in 160 species: Archae - 0; Bacteria - 383; Metazoa - 0; Fungi - 94; Plants - 399; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G01270.1p  transcript_id AT3G01270.1  protein_id AT3G01270.1p  transcript_id AT3G01270.1  
At3g01280	chr3:000085754	0.0	W/85754-85802,86302-86369,86599-86709,86824-86910,87011-87219,87306-87612	AT3G01280.1  CDS  gene_syn 5076, ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, ATVDAC1, T22N4.9, T22N4_9, VDAC1, VOLTAGE DEPENDENT ANION CHANNEL 1  gene VDAC1  function Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.  go_component mitochondrion|GO:0005739|15276431|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component mitochondrion|GO:0005739|19326079|IDA  go_component mitochondrial outer membrane|GO:0005741||ISS  go_component chloroplast|GO:0009507|19326079|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process anion transport|GO:0006820||ISS  go_process response to bacterium|GO:0009617|19326079|IEP  go_function voltage-gated anion channel activity|GO:0008308|19326079|IMP  go_function voltage-gated anion channel activity|GO:0008308||ISS  product VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1); voltage-gated anion channel  note VOLTAGE DEPENDENT ANION CHANNEL 1 (VDAC1); FUNCTIONS IN: voltage-gated anion channel activity; INVOLVED IN: response to bacterium, anion transport; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Porin, eukaryotic type (InterPro:IPR001925); BEST Arabidopsis thaliana protein match is: VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3); voltage-gated anion channel (TAIR:AT5G15090.1); Has 671 Blast hits to 670 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 376; Fungi - 98; Plants - 182; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT3G01280.1p  transcript_id AT3G01280.1  protein_id AT3G01280.1p  transcript_id AT3G01280.1  
At3g01290	chr3:000089168	0.0	C/89168-89356,88970-89090,88693-88881,88252-88610	AT3G01290.1  CDS  gene_syn T22N4.8, T22N4_8  go_component mitochondrion|GO:0005739|15276431|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  product band 7 family protein  note band 7 family protein; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: mitochondrion, plasma membrane, vacuole, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: band 7 family protein (TAIR:AT5G62740.1); Has 5287 Blast hits to 5286 proteins in 1196 species: Archae - 142; Bacteria - 3001; Metazoa - 507; Fungi - 175; Plants - 165; Viruses - 3; Other Eukaryotes - 1294 (source: NCBI BLink).  protein_id AT3G01290.1p  transcript_id AT3G01290.1  protein_id AT3G01290.1p  transcript_id AT3G01290.1  
At3g01300	chr3:000093110	0.0	C/93110-93335,92485-92822,92262-92397,91730-91866,91514-91637,90817-91328	AT3G01300.1  CDS  gene_syn T22N4.7, T22N4_7  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT5G15080.1); Has 81930 Blast hits to 80946 proteins in 2720 species: Archae - 48; Bacteria - 7504; Metazoa - 36000; Fungi - 6182; Plants - 18223; Viruses - 342; Other Eukaryotes - 13631 (source: NCBI BLink).  protein_id AT3G01300.1p  transcript_id AT3G01300.1  protein_id AT3G01300.1p  transcript_id AT3G01300.1  
At3g01310	chr3:000101514	0.0	C/101514-101603,101297-101356,100970-101016,100735-100818,100547-100610,100263-100416,100084-100154,99858-99962,99485-99577,99214-99288,99005-99090,98623-98829,98432-98531,98276-98346,98015-98096,97609-97767,97418-97460,97230-97312,97014-97076,96858-96932,96551-96682,96109-96344,95957-96001,95804-95870,95589-95660,95246-95484,95107-95164,94854-95021,94685-94759,94343-94609	AT3G01310.1  CDS  gene_syn T22N4.6, T22N4_6, T4P13.1, T4P13_1  go_component plasma membrane|GO:0005886|17317660|IDA  go_function acid phosphatase activity|GO:0003993||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function transition metal ion binding|GO:0046914||IEA  go_process biological_process|GO:0008150||ND  product acid phosphatase/ oxidoreductase/ transition metal ion binding  note acid phosphatase/ oxidoreductase/ transition metal ion binding; FUNCTIONS IN: oxidoreductase activity, transition metal ion binding, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histidine acid phosphatase (InterPro:IPR000560), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078); BEST Arabidopsis thaliana protein match is: acid phosphatase/ oxidoreductase/ transition metal ion binding (TAIR:AT5G15070.1); Has 471 Blast hits to 374 proteins in 140 species: Archae - 0; Bacteria - 2; Metazoa - 201; Fungi - 125; Plants - 35; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT3G01310.1p  transcript_id AT3G01310.1  protein_id AT3G01310.1p  transcript_id AT3G01310.1  
At3g01310	chr3:000101532	0.0	C/101532-101603,101297-101356,100970-101016,100735-100818,100547-100610,100263-100416,100084-100154,99858-99962,99485-99577,99214-99288,99005-99090,98623-98829,98432-98531,98276-98346,98015-98096,97609-97767,97418-97460,97230-97312,97014-97076,96858-96932,96551-96682,96109-96344,95957-96001,95804-95870,95589-95660,95246-95484,95107-95164,94854-95021,94685-94759,94343-94609	AT3G01310.2  CDS  gene_syn T22N4.6, T22N4_6, T4P13.1, T4P13_1  go_component plasma membrane|GO:0005886|17317660|IDA  go_function acid phosphatase activity|GO:0003993||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function transition metal ion binding|GO:0046914||IEA  go_process biological_process|GO:0008150||ND  product acid phosphatase/ oxidoreductase/ transition metal ion binding  note acid phosphatase/ oxidoreductase/ transition metal ion binding; FUNCTIONS IN: oxidoreductase activity, transition metal ion binding, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histidine acid phosphatase (InterPro:IPR000560), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078); BEST Arabidopsis thaliana protein match is: acid phosphatase/ oxidoreductase/ transition metal ion binding (TAIR:AT5G15070.1); Has 471 Blast hits to 374 proteins in 140 species: Archae - 0; Bacteria - 2; Metazoa - 201; Fungi - 125; Plants - 35; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT3G01310.2p  transcript_id AT3G01310.2  protein_id AT3G01310.2p  transcript_id AT3G01310.2  
At3g01311	chr3:000104054	0.0	C/104054-104287,103501-103773,103043-103414	AT3G01311.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF569 (InterPro:IPR007679), Actin_cross-linking (InterPro:IPR008999); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28630.2); Has 121 Blast hits to 98 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G01311.1p  transcript_id AT3G01311.1  protein_id AT3G01311.1p  transcript_id AT3G01311.1  
At3g01313	chr3:000104687	0.0	C/104687-104769	AT3G01313.1  snoRNA  gene_syn 60221.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT3G01313.1  
At3g01316	chr3:000104835	0.0	C/104835-104909	AT3G01316.1  snoRNA  gene_syn 60221.SNORNA00002  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT3G01316.1  
At3g01319	chr3:000106296	0.0	C/106296-106436	AT3G01319.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G01319.1p  transcript_id AT3G01319.1  protein_id AT3G01319.1p  transcript_id AT3G01319.1  
At3g01320	chr3:000106730	0.0	W/106730-106806,106960-107151,107239-107422,107513-107611,107681-107848,107938-108214,108404-108540,108620-108698,108781-108816,108914-109107,109182-109336,109410-109537,109659-109913,110059-110751,110832-110920,111150-111728,111794-111894,111986-112124,112218-112370,112473-112639,112835-112928,113075-113197	AT3G01320.1  CDS  gene_syn SIN3-LIKE 1, SNL1, T22N4.5, T22N4_5  gene SNL1  function Encodes SIN3-like 1, a homolog of the transcriptional repressor SIN3 (AT1G24190).  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function molecular_function|GO:0003674||ND  product SNL1 (SIN3-LIKE 1)  note SIN3-LIKE 1 (SNL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SNL2 (SIN3-LIKE 2) (TAIR:AT5G15020.1); Has 7908 Blast hits to 4021 proteins in 348 species: Archae - 22; Bacteria - 2474; Metazoa - 2693; Fungi - 985; Plants - 323; Viruses - 183; Other Eukaryotes - 1228 (source: NCBI BLink).  protein_id AT3G01320.1p  transcript_id AT3G01320.1  protein_id AT3G01320.1p  transcript_id AT3G01320.1  
At3g01322	chr3:000114290	0.0	W/114290-114604	AT3G01322.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01328.1); Has 19 Blast hits to 18 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G01322.1p  transcript_id AT3G01322.1  protein_id AT3G01322.1p  transcript_id AT3G01322.1  
At3g01326	chr3:000115359	0.0	W/115359-115664	AT3G01326.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01327.1); Has 17 Blast hits to 17 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G01326.1p  transcript_id AT3G01326.1  protein_id AT3G01326.1p  transcript_id AT3G01326.1  
At3g01327	chr3:000116231	0.0	C/116231-116548	AT3G01327.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01322.1); Has 18 Blast hits to 18 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G01327.1p  transcript_id AT3G01327.1  protein_id AT3G01327.1p  transcript_id AT3G01327.1  
At3g01328	chr3:000117254	0.0	C/117254-117568	AT3G01328.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01322.1); Has 18 Blast hits to 18 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G01328.1p  transcript_id AT3G01328.1  protein_id AT3G01328.1p  transcript_id AT3G01328.1  
At3g01329	chr3:000118873	0.0	C/118873-119178	AT3G01329.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01324.1); Has 18 Blast hits to 18 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G01329.1p  transcript_id AT3G01329.1  protein_id AT3G01329.1p  transcript_id AT3G01329.1  
At3g01331	chr3:000119618	0.0	C/119618-119917	AT3G01331.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Expressed protein (TAIR:AT3G01325.1); Has 16 Blast hits to 16 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G01331.1p  transcript_id AT3G01331.1  protein_id AT3G01331.1p  transcript_id AT3G01331.1  
At3g01323	chr3:000121120	0.0	C/121120-121416	AT3G01323.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01322.1); Has 14 Blast hits to 14 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G01323.1p  transcript_id AT3G01323.1  protein_id AT3G01323.1p  transcript_id AT3G01323.1  
At3g01324	chr3:000122140	0.0	C/122140-122448	AT3G01324.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01329.1); Has 18 Blast hits to 18 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G01324.1p  transcript_id AT3G01324.1  protein_id AT3G01324.1p  transcript_id AT3G01324.1  
At3g01325	chr3:000123412	0.0	C/123412-123720	AT3G01325.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Expressed protein  note Expressed protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01331.1); Has 14 Blast hits to 14 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G01325.1p  transcript_id AT3G01325.1  protein_id AT3G01325.1p  transcript_id AT3G01325.1  
At3g01330	chr3:000126711	0.0	C/126711-126805,126564-126631,126335-126387,126187-126264,126044-126097,125840-125918,125559-125626,125392-125464,125234-125295,124770-125130,124596-124669	AT3G01330.1  CDS  gene_syn DEL3, DP-E2F-LIKE PROTEIN 3, E2F-LIKE 2, E2FF, E2L2, T22N4.4, T22N4_4  gene DEL3  function Member of the E2F transcription factors, (cell cycle genes), key components of the cyclin D/retinoblastoma/E2F pathway.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634|11867638|IDA  go_component cytoplasm|GO:0005737|11867638|IDA  go_function DNA binding|GO:0003677|11867638|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  product DEL3 (DP-E2F-LIKE PROTEIN 3); DNA binding / transcription factor  note DP-E2F-LIKE PROTEIN 3 (DEL3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Transcription factor E2F/dimerisation partner (TDP) (InterPro:IPR003316), E2F Family (InterPro:IPR015633); BEST Arabidopsis thaliana protein match is: DEL2 (DP-E2F-LIKE 2); DNA binding / transcription factor (TAIR:AT5G14960.1); Has 830 Blast hits to 687 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 556; Fungi - 6; Plants - 162; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).  protein_id AT3G01330.1p  transcript_id AT3G01330.1  protein_id AT3G01330.1p  transcript_id AT3G01330.1  
At3g01340	chr3:000127557	0.0	C/127557-128465	AT3G01340.1  CDS  gene_syn T22N4.3, T22N4_3  go_component cellular_component|GO:0005575||ND  go_process intracellular protein transport|GO:0006886||ISS  go_process membrane budding|GO:0006900|8432727|ISS  go_function nucleotide binding|GO:0000166||ISS  product protein transport protein SEC13 family protein / WD-40 repeat family protein  note protein transport protein SEC13 family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: intracellular protein transport, membrane budding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT2G30050.1); Has 16199 Blast hits to 10279 proteins in 408 species: Archae - 22; Bacteria - 3034; Metazoa - 6785; Fungi - 3044; Plants - 1251; Viruses - 0; Other Eukaryotes - 2063 (source: NCBI BLink).  protein_id AT3G01340.1p  transcript_id AT3G01340.1  protein_id AT3G01340.1p  transcript_id AT3G01340.1  
At3g01340	chr3:000127557	0.0	C/127557-128465	AT3G01340.2  CDS  gene_syn T22N4.3, T22N4_3  go_component cellular_component|GO:0005575||ND  go_process intracellular protein transport|GO:0006886||ISS  go_process membrane budding|GO:0006900|8432727|ISS  go_function nucleotide binding|GO:0000166||ISS  product protein transport protein SEC13 family protein / WD-40 repeat family protein  note protein transport protein SEC13 family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: intracellular protein transport, membrane budding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT2G30050.1); Has 16199 Blast hits to 10279 proteins in 408 species: Archae - 22; Bacteria - 3034; Metazoa - 6785; Fungi - 3044; Plants - 1251; Viruses - 0; Other Eukaryotes - 2063 (source: NCBI BLink).  protein_id AT3G01340.2p  transcript_id AT3G01340.2  protein_id AT3G01340.2p  transcript_id AT3G01340.2  
At3g01345	chr3:000129319	0.0	W/129319-130719	AT3G01345.1  CDS  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  go_component membrane|GO:0016020|11152613|ISS  product Expressed protein  note Expressed protein; FUNCTIONS IN: beta-galactosidase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28919.1); Has 12 Blast hits to 12 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G01345.1p  transcript_id AT3G01345.1  protein_id AT3G01345.1p  transcript_id AT3G01345.1  
At3g01350	chr3:000135024	0.0	W/135024-135078,135175-135392,135958-136493,136578-137460	AT3G01350.1  CDS  gene_syn T13O15.11  go_component membrane|GO:0016020||IEA  go_process oligopeptide transport|GO:0006857||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT5G14940.1); Has 3167 Blast hits to 3063 proteins in 540 species: Archae - 0; Bacteria - 971; Metazoa - 421; Fungi - 286; Plants - 1119; Viruses - 0; Other Eukaryotes - 370 (source: NCBI BLink).  protein_id AT3G01350.1p  transcript_id AT3G01350.1  protein_id AT3G01350.1p  transcript_id AT3G01350.1  
At3g01360	chr3:000137772	0.0	C/137772-138731	AT3G01360.1  CDS  gene_syn T13O15.14  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55230.1); Has 112 Blast hits to 110 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 111; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G01360.1p  transcript_id AT3G01360.1  protein_id AT3G01360.1p  transcript_id AT3G01360.1  
At3g01360	chr3:000137772	0.0	C/137772-138731	AT3G01360.2  CDS  gene_syn T13O15.14  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55230.1); Has 112 Blast hits to 110 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 111; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G01360.2p  transcript_id AT3G01360.2  protein_id AT3G01360.2p  transcript_id AT3G01360.2  
At3g01370	chr3:000139033	0.0	W/139033-139722,139856-140363,140450-140580,140717-141031,141117-141273,141432-141724,141860-141919,142004-142060,142155-142268,142385-142564,142651-142840,143049-143179,143268-143477	AT3G01370.1  CDS  gene_syn ATCFM2, CFM2, CRM FAMILY MEMBER 2, T13O15.1, T13O15_1  gene ATCFM2  function Encodes a protein containing a CRM domain that is involved in group I and group II intron splicing.  go_component chloroplast|GO:0009507|18065687|RCA  go_function RNA binding|GO:0003723||IEA  go_process Group I intron splicing|GO:0000372|18065687|IMP  go_process Group II intron splicing|GO:0000373|18065687|IMP  product ATCFM2 (CRM FAMILY MEMBER 2); RNA binding  note CRM FAMILY MEMBER 2 (ATCFM2); FUNCTIONS IN: RNA binding; INVOLVED IN: Group I intron splicing, Group II intron splicing; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA binding (TAIR:AT3G23070.1); Has 957 Blast hits to 690 proteins in 123 species: Archae - 0; Bacteria - 34; Metazoa - 225; Fungi - 59; Plants - 424; Viruses - 4; Other Eukaryotes - 211 (source: NCBI BLink).  protein_id AT3G01370.1p  transcript_id AT3G01370.1  protein_id AT3G01370.1p  transcript_id AT3G01370.1  
At3g01380	chr3:000149549	0.0	C/149549-149828,149203-149394,148954-149109,148522-148815,147896-148113,147728-147802,147446-147512,146888-147189,146485-146718,146214-146401,145746-145887,145563-145671,145372-145474,145098-145287,144889-144987,144740-144798,144543-144648,144288-144455	AT3G01380.1  CDS  gene_syn T13O15.2, T13O15_2  go_process GPI anchor biosynthetic process|GO:0006506||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function transferase activity|GO:0016740||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process GPI anchor biosynthetic process|GO:0006506||ISS  go_function transferase activity|GO:0016740||ISS  product catalytic/ transferase  note catalytic/ transferase; FUNCTIONS IN: transferase activity, catalytic activity; INVOLVED IN: GPI anchor biosynthetic process, metabolic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GPI ethanolamine phosphate transferase 1, C-terminal (InterPro:IPR017852), Alkaline phosphatase-like, alpha/beta/alpha (InterPro:IPR017849), GPI ethanolamine phosphate transferase 1 (InterPro:IPR007070), Alkaline-phosphatase-like, core domain (InterPro:IPR017850); Has 918 Blast hits to 799 proteins in 153 species: Archae - 0; Bacteria - 37; Metazoa - 426; Fungi - 327; Plants - 42; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT3G01380.1p  transcript_id AT3G01380.1  protein_id AT3G01380.1p  transcript_id AT3G01380.1  
At3g01390	chr3:000150835	0.0	C/150835-150922,150496-150596,150265-150408	AT3G01390.1  CDS  gene_syn AVMA10, T13O15.3, T13O15_3, VACUOLAR MEMBRANE ATPASE 10, VACUOLAR MEMBRANE ATPASE SUBUNIT G, VHA-G1, VMA10  gene VMA10  function Subunit G of the vacuolar membrane ATPAse complex  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plant-type vacuole|GO:0000325|11004467|ISS  go_component proton-transporting two-sector ATPase complex|GO:0016469|11004467|ISS  go_process ATP hydrolysis coupled proton transport|GO:0015991|11004467|ISS  go_function hydrogen ion transporting ATP synthase activity, rotational mechanism|GO:0046933|11004467|ISS  product VMA10 (VACUOLAR MEMBRANE ATPASE 10); hydrogen ion transporting ATP synthase, rotational mechanism  note VACUOLAR MEMBRANE ATPASE 10 (VMA10); FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism; INVOLVED IN: ATP hydrolysis coupled proton transport; LOCATED IN: plasma membrane, proton-transporting two-sector ATPase complex, vacuole, plant-type vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar (H+)-ATPase G subunit (InterPro:IPR005124); BEST Arabidopsis thaliana protein match is: VAG2; hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances (TAIR:AT4G23710.1); Has 451 Blast hits to 449 proteins in 146 species: Archae - 0; Bacteria - 12; Metazoa - 228; Fungi - 81; Plants - 77; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT3G01390.1p  transcript_id AT3G01390.1  protein_id AT3G01390.1p  transcript_id AT3G01390.1  
At3g01390	chr3:000150835	0.0	C/150835-150922,150496-150596,150265-150408	AT3G01390.2  CDS  gene_syn AVMA10, T13O15.3, T13O15_3, VACUOLAR MEMBRANE ATPASE 10, VACUOLAR MEMBRANE ATPASE SUBUNIT G, VHA-G1, VMA10  gene VMA10  function Subunit G of the vacuolar membrane ATPAse complex  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plant-type vacuole|GO:0000325|11004467|ISS  go_component proton-transporting two-sector ATPase complex|GO:0016469|11004467|ISS  go_process ATP hydrolysis coupled proton transport|GO:0015991|11004467|ISS  go_function hydrogen ion transporting ATP synthase activity, rotational mechanism|GO:0046933|11004467|ISS  product VMA10 (VACUOLAR MEMBRANE ATPASE 10); hydrogen ion transporting ATP synthase, rotational mechanism  note VACUOLAR MEMBRANE ATPASE 10 (VMA10); FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism; INVOLVED IN: ATP hydrolysis coupled proton transport; LOCATED IN: plasma membrane, proton-transporting two-sector ATPase complex, vacuole, plant-type vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar (H+)-ATPase G subunit (InterPro:IPR005124); BEST Arabidopsis thaliana protein match is: VAG2; hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances (TAIR:AT4G23710.1); Has 451 Blast hits to 449 proteins in 146 species: Archae - 0; Bacteria - 12; Metazoa - 228; Fungi - 81; Plants - 77; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT3G01390.2p  transcript_id AT3G01390.2  protein_id AT3G01390.2p  transcript_id AT3G01390.2  
At3g01400	chr3:000151920	0.0	W/151920-152987	AT3G01400.1  CDS  gene_syn T13O15.4, T13O15_4  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product armadillo/beta-catenin repeat family protein  note armadillo/beta-catenin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein (TAIR:AT5G58680.1); Has 3812 Blast hits to 2325 proteins in 207 species: Archae - 0; Bacteria - 2; Metazoa - 1580; Fungi - 356; Plants - 1453; Viruses - 0; Other Eukaryotes - 421 (source: NCBI BLink).  protein_id AT3G01400.1p  transcript_id AT3G01400.1  protein_id AT3G01400.1p  transcript_id AT3G01400.1  
At3g01410	chr3:000155329	0.0	C/155329-155439,155079-155237,154835-154900,154582-154701,154257-154493,154052-154159,153811-153862,153650-153681	AT3G01410.1  CDS  gene_syn T13O15.5, T13O15_5  go_function nucleic acid binding|GO:0003676||IEA  go_function ribonuclease H activity|GO:0004523||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nuclease activity|GO:0004518||ISS  product RNase H domain-containing protein  note RNase H domain-containing protein; FUNCTIONS IN: ribonuclease H activity, nuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Ribonuclease H (InterPro:IPR002156); BEST Arabidopsis thaliana protein match is: RNase H domain-containing protein (TAIR:AT1G24090.1); Has 2378 Blast hits to 2378 proteins in 271 species: Archae - 46; Bacteria - 450; Metazoa - 12; Fungi - 0; Plants - 1407; Viruses - 0; Other Eukaryotes - 463 (source: NCBI BLink).  protein_id AT3G01410.1p  transcript_id AT3G01410.1  protein_id AT3G01410.1p  transcript_id AT3G01410.1  
At3g01410	chr3:000155329	0.0	C/155329-155439,155079-155237,154835-154900,154582-154701,154257-154493,154052-154159,153811-153862,153650-153681	AT3G01410.2  CDS  gene_syn T13O15.5, T13O15_5  go_function nucleic acid binding|GO:0003676||IEA  go_function ribonuclease H activity|GO:0004523||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nuclease activity|GO:0004518||ISS  product RNase H domain-containing protein  note RNase H domain-containing protein; FUNCTIONS IN: ribonuclease H activity, nuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Ribonuclease H (InterPro:IPR002156); BEST Arabidopsis thaliana protein match is: RNase H domain-containing protein (TAIR:AT1G24090.1); Has 2378 Blast hits to 2378 proteins in 271 species: Archae - 46; Bacteria - 450; Metazoa - 12; Fungi - 0; Plants - 1407; Viruses - 0; Other Eukaryotes - 463 (source: NCBI BLink).  protein_id AT3G01410.2p  transcript_id AT3G01410.2  protein_id AT3G01410.2p  transcript_id AT3G01410.2  
At3g01420	chr3:000162619	0.0	C/162619-162726,162191-162454,161872-162021,161640-161773,161208-161424,160960-161105,160637-160864,160342-160544,160020-160263,159689-159914	AT3G01420.1  CDS  gene_syn ALPHA-DOX1, DOX1, T13O15.6, T13O15_6, alpha-dioxygenase 1  gene DOX1  function Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress. Independent of NPR1 in induction by salicylic acid.  go_component endomembrane system|GO:0012505||IEA  go_process fatty acid alpha-oxidation|GO:0001561|10455113|IDA  go_process lipid metabolic process|GO:0006629|16307367|TAS  go_process response to oxidative stress|GO:0006979|12060227|IMP  go_process cell death|GO:0008219|12060227|IEP  go_process response to salicylic acid stimulus|GO:0009751|16307367|IEP  go_process response to other organism|GO:0051707||ISS  go_function lipoxygenase activity|GO:0016165|10455113|IDA  product DOX1; lipoxygenase  note DOX1; FUNCTIONS IN: lipoxygenase activity; INVOLVED IN: in 6 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Haem peroxidase, animal (InterPro:IPR002007); BEST Arabidopsis thaliana protein match is: pathogen-responsive alpha-dioxygenase, putative (TAIR:AT1G73680.1); Has 1244 Blast hits to 1164 proteins in 173 species: Archae - 0; Bacteria - 73; Metazoa - 988; Fungi - 105; Plants - 42; Viruses - 1; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT3G01420.1p  transcript_id AT3G01420.1  protein_id AT3G01420.1p  transcript_id AT3G01420.1  
At3g01430	chr3:000165595	0.0	C/165595-166137	AT3G01430.1  CDS  gene_syn T13O15.7, T13O15_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: NHL repeat-containing protein (TAIR:AT5G14890.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G01430.1p  transcript_id AT3G01430.1  protein_id AT3G01430.1p  transcript_id AT3G01430.1  
At3g01435	chr3:000167931	0.0	C/167931-167984,167718-167834,166853-167029	AT3G01435.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Expressed protein  note Expressed protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 36 Blast hits to 36 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G01435.1p  transcript_id AT3G01435.1  protein_id AT3G01435.1p  transcript_id AT3G01435.1  
At3g01440	chr3:000168478	0.0	W/168478-168754,168899-169185,169309-169407	AT3G01440.1  CDS  gene_syn T13O15.8, T13O15_8  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_function calcium ion binding|GO:0005509||IEA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component oxygen evolving complex|GO:0009654|11719511|TAS  go_component chloroplast photosystem II|GO:0030095||ISS  go_process photosynthesis, light reaction|GO:0019684|11719511|TAS  product oxygen evolving enhancer 3 (PsbQ) family protein  note oxygen evolving enhancer 3 (PsbQ) family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis, light reaction; LOCATED IN: chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast, oxygen evolving complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbQ (InterPro:IPR008797); BEST Arabidopsis thaliana protein match is: oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ) (TAIR:AT4G21280.2); Has 110 Blast hits to 110 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 110; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G01440.1p  transcript_id AT3G01440.1  protein_id AT3G01440.1p  transcript_id AT3G01440.1  
At3g01450	chr3:000171122	0.0	C/171122-171379,170851-170957,170620-170752,170331-170525,169903-170190	AT3G01450.1  CDS  gene_syn T13O15.9, T13O15_9  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT5G14790.1); Has 188 Blast hits to 188 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 97; Fungi - 6; Plants - 61; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT3G01450.1p  transcript_id AT3G01450.1  protein_id AT3G01450.1p  transcript_id AT3G01450.1  
At3g01460	chr3:000173316	0.0	W/173316-173830,174254-174941,175032-176144,176250-176930,177318-177620,177821-178156,178510-178608,178962-179396,179584-181635,181730-182038	AT3G01460.1  CDS  gene_syn MBD9, T13O15.10, T13O15_10  gene MBD9  function Encodes a protein with a methyl-CpG-binding domain. Has sequence similarity to human MBD proteins. Involved in the modification of the FLC chromatin acetylation state to affect FLC expression. Mutants show an early flowering, and enhanced shoot branching phenotypes.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|16623890|IMP  go_process secondary shoot formation|GO:0010223|16623890|IMP  go_process photoperiodism, flowering|GO:0048573|16623890|IMP  go_function DNA binding|GO:0003677||ISS  go_function methyl-CpG binding|GO:0008327|12787239|ISS  product MBD9; DNA binding / methyl-CpG binding  note MBD9; FUNCTIONS IN: methyl-CpG binding, DNA binding; INVOLVED IN: photoperiodism, flowering, secondary shoot formation, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), FY-rich, C-terminal (InterPro:IPR003889), Zinc finger, PHD-type (InterPro:IPR001965), FY-rich, N-terminal (InterPro:IPR003888), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), DNA-binding, integrase-type (InterPro:IPR016177), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Methyl-CpG DNA binding (InterPro:IPR001739); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT1G77250.1); Has 4843 Blast hits to 2967 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 3528; Fungi - 405; Plants - 616; Viruses - 0; Other Eukaryotes - 294 (source: NCBI BLink).  protein_id AT3G01460.1p  transcript_id AT3G01460.1  protein_id AT3G01460.1p  transcript_id AT3G01460.1  
At3g01470	chr3:000183947	0.0	C/183947-184034,183628-183767,183301-183540,182648-182998	AT3G01470.1  CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX 1, ATHB-1, ATHB1, F4P13.2, F4P13_2, HAT5, HD-ZIP-1, HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5  gene ATHB-1  function Encodes a homeodomain leucine zipper class I (HD-Zip I) transcriptional activator involved in leaf development.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to blue light|GO:0009637|16055682|IEP  go_process response to salt stress|GO:0009651|16055682|IEP  go_process leaf morphogenesis|GO:0009965|8535134|IMP  go_process positive regulation of transcription|GO:0045941|16055682|IDA  go_function DNA binding|GO:0003677||IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|16055682|IDA  go_function transcription activator activity|GO:0016563|8535134|IDA  go_function protein homodimerization activity|GO:0042803|8253077|IDA  go_function sequence-specific DNA binding|GO:0043565|11247607|IDA  go_function sequence-specific DNA binding|GO:0043565|8253077|IDA  product ATHB-1 (ARABIDOPSIS THALIANA HOMEOBOX 1); DNA binding / protein homodimerization/ sequence-specific DNA binding / transcription activator/ transcription factor  note ARABIDOPSIS THALIANA HOMEOBOX 1 (ATHB-1); FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding, protein homodimerization activity, transcription activator activity, DNA binding; INVOLVED IN: response to salt stress, positive regulation of transcription, response to blue light, regulation of transcription, DNA-dependent, leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: stem, fruit, flower, root, leaf; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ATHB16 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 16); sequence-specific DNA binding / transcription activator/ transcription factor (TAIR:AT4G40060.1); Has 10307 Blast hits to 10283 proteins in 459 species: Archae - 0; Bacteria - 0; Metazoa - 8498; Fungi - 180; Plants - 1430; Viruses - 5; Other Eukaryotes - 194 (source: NCBI BLink).  protein_id AT3G01470.1p  transcript_id AT3G01470.1  protein_id AT3G01470.1p  transcript_id AT3G01470.1  
At3g01472	chr3:000184155	0.0	C/184155-184241	AT3G01472.1  CDS  gene_syn CPuORF33, Conserved peptide upstream open reading frame 33  gene CPuORF33  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF33 represents a conserved upstream opening reading frame relative to major ORF AT3G01470.1  product CPuORF33 (Conserved peptide upstream open reading frame 33)  note Conserved peptide upstream open reading frame 33 (CPuORF33); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G01472.1p  transcript_id AT3G01472.1  protein_id AT3G01472.1p  transcript_id AT3G01472.1  
At3g01480	chr3:000188569	0.0	W/188569-188709,189005-189298,189428-189627,189741-189976,190056-190198,190285-190356,190447-190674	AT3G01480.1  CDS  gene_syn CYP38, F4P13.3, F4P13_3, cyclophilin 38  gene CYP38  function Encodes a chloroplast cyclophilin functioning in the assembly and maintenance of photosystem II (PSII) supercomplexes.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||IEA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  go_component chloroplast thylakoid lumen|GO:0009543||ISS  go_process protein folding|GO:0006457||ISS  go_process photosystem II assembly|GO:0010207|17909185|IMP  go_process photosystem II stabilization|GO:0042549|17909185|IMP  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product CYP38 (cyclophilin 38); peptidyl-prolyl cis-trans isomerase  note cyclophilin 38 (CYP38); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: photosystem II stabilization, photosystem II assembly, protein folding, defense response to bacterium; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerase TLP38, chloroplast / thylakoid lumen PPIase of 38 kDa / cyclophilin / rotamase (TAIR:AT3G15520.1); Has 1394 Blast hits to 1394 proteins in 354 species: Archae - 32; Bacteria - 781; Metazoa - 8; Fungi - 14; Plants - 51; Viruses - 0; Other Eukaryotes - 508 (source: NCBI BLink).  protein_id AT3G01480.1p  transcript_id AT3G01480.1  protein_id AT3G01480.1p  transcript_id AT3G01480.1  
At3g01480	chr3:000188569	0.0	W/188569-188709,189005-189298,189428-189627,189741-189976,190056-190252	AT3G01480.2  CDS  gene_syn CYP38, F4P13.3, F4P13_3, cyclophilin 38  gene CYP38  function Encodes a chloroplast cyclophilin functioning in the assembly and maintenance of photosystem II (PSII) supercomplexes.  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||IEA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  go_component chloroplast thylakoid lumen|GO:0009543||ISS  go_process protein folding|GO:0006457||ISS  go_process photosystem II assembly|GO:0010207|17909185|IMP  go_process photosystem II stabilization|GO:0042549|17909185|IMP  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product CYP38 (cyclophilin 38); peptidyl-prolyl cis-trans isomerase  note cyclophilin 38 (CYP38); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: photosystem II stabilization, photosystem II assembly, protein folding, defense response to bacterium; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerase TLP38, chloroplast / thylakoid lumen PPIase of 38 kDa / cyclophilin / rotamase (TAIR:AT3G15520.1); Has 596 Blast hits to 596 proteins in 104 species: Archae - 18; Bacteria - 264; Metazoa - 0; Fungi - 2; Plants - 53; Viruses - 0; Other Eukaryotes - 259 (source: NCBI BLink).  protein_id AT3G01480.2p  transcript_id AT3G01480.2  protein_id AT3G01480.2p  transcript_id AT3G01480.2  
At3g01490	chr3:000192859	0.0	C/192859-193258,192261-192382,191800-191996,191405-191714,191095-191301	AT3G01490.1  CDS  gene_syn F4P13.4, F4P13_4  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), ATMRK serine/threonine protein kinase-like (InterPro:IPR015783), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT5G50000.1); Has 94023 Blast hits to 92834 proteins in 3425 species: Archae - 65; Bacteria - 7869; Metazoa - 41728; Fungi - 7866; Plants - 18963; Viruses - 594; Other Eukaryotes - 16938 (source: NCBI BLink).  protein_id AT3G01490.1p  transcript_id AT3G01490.1  protein_id AT3G01490.1p  transcript_id AT3G01490.1  
At3g01500	chr3:000196664	0.0	C/196664-196716,196356-196505,196207-196255,195982-196098,195788-195841,195609-195694,195406-195511,195179-195337,194853-194891	AT3G01500.1  CDS  gene_syn ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, ATBCA1, ATSABP3, BETA CARBONIC ANHYDRASE 1, CA1, CARBONIC ANHYDRASE 1, F4P13.5, F4P13_5, SABP3, SALICYLIC ACID-BINDING PROTEIN 3  gene CA1  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_function carbonate dehydratase activity|GO:0004089||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component chloroplast|GO:0009507|17407539|IDA  go_component stromule|GO:0010319|16923014|IDA  go_process response to cold|GO:0009409|16923014|IEP  go_process carbon utilization|GO:0015976||ISS  go_function carbonate dehydratase activity|GO:0004089||ISS  go_function zinc ion binding|GO:0008270||ISS  product CA1 (CARBONIC ANHYDRASE 1); carbonate dehydratase/ zinc ion binding  note CARBONIC ANHYDRASE 1 (CA1); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: response to cold, defense response to bacterium, carbon utilization; LOCATED IN: in 8 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: CA2 (CARBONIC ANHYDRASE 2); carbonate dehydratase/ zinc ion binding (TAIR:AT5G14740.2); Has 3255 Blast hits to 3241 proteins in 952 species: Archae - 20; Bacteria - 2328; Metazoa - 48; Fungi - 143; Plants - 233; Viruses - 0; Other Eukaryotes - 483 (source: NCBI BLink).  protein_id AT3G01500.1p  transcript_id AT3G01500.1  protein_id AT3G01500.1p  transcript_id AT3G01500.1  
At3g01500	chr3:000197652	0.0	C/197652-197873,196664-196725,196356-196505,196207-196255,195982-196098,195788-195841,195609-195694,195406-195511,195173-195337	AT3G01500.3  CDS  gene_syn ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, ATBCA1, ATSABP3, BETA CARBONIC ANHYDRASE 1, CA1, CARBONIC ANHYDRASE 1, F4P13.5, F4P13_5, SABP3, SALICYLIC ACID-BINDING PROTEIN 3  gene CA1  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_function carbonate dehydratase activity|GO:0004089||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component chloroplast|GO:0009507|17407539|IDA  go_component stromule|GO:0010319|16923014|IDA  go_process response to cold|GO:0009409|16923014|IEP  go_process carbon utilization|GO:0015976||ISS  go_function carbonate dehydratase activity|GO:0004089||ISS  go_function zinc ion binding|GO:0008270||ISS  product CA1 (CARBONIC ANHYDRASE 1); carbonate dehydratase/ zinc ion binding  note CARBONIC ANHYDRASE 1 (CA1); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: response to cold, defense response to bacterium, carbon utilization; LOCATED IN: in 7 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: CA2 (CARBONIC ANHYDRASE 2); carbonate dehydratase/ zinc ion binding (TAIR:AT5G14740.2); Has 3258 Blast hits to 3244 proteins in 952 species: Archae - 20; Bacteria - 2328; Metazoa - 48; Fungi - 143; Plants - 233; Viruses - 0; Other Eukaryotes - 486 (source: NCBI BLink).  protein_id AT3G01500.3p  transcript_id AT3G01500.3  protein_id AT3G01500.3p  transcript_id AT3G01500.3  
At3g01500	chr3:000197652	0.0	C/197652-197873,196664-196725,196356-196505,196207-196255,195982-196098,195788-195841,195609-195694,195406-195511,195179-195337,194853-194891	AT3G01500.2  CDS  gene_syn ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, ATBCA1, ATSABP3, BETA CARBONIC ANHYDRASE 1, CA1, CARBONIC ANHYDRASE 1, F4P13.5, F4P13_5, SABP3, SALICYLIC ACID-BINDING PROTEIN 3  gene CA1  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_function carbonate dehydratase activity|GO:0004089||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component chloroplast|GO:0009507|17407539|IDA  go_component stromule|GO:0010319|16923014|IDA  go_process response to cold|GO:0009409|16923014|IEP  go_process carbon utilization|GO:0015976||ISS  go_function carbonate dehydratase activity|GO:0004089||ISS  go_function zinc ion binding|GO:0008270||ISS  product CA1 (CARBONIC ANHYDRASE 1); carbonate dehydratase/ zinc ion binding  note CARBONIC ANHYDRASE 1 (CA1); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: response to cold, defense response to bacterium, carbon utilization; LOCATED IN: in 8 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: CA2 (CARBONIC ANHYDRASE 2); carbonate dehydratase/ zinc ion binding (TAIR:AT5G14740.2); Has 3258 Blast hits to 3244 proteins in 952 species: Archae - 20; Bacteria - 2328; Metazoa - 48; Fungi - 143; Plants - 233; Viruses - 0; Other Eukaryotes - 486 (source: NCBI BLink).  protein_id AT3G01500.2p  transcript_id AT3G01500.2  protein_id AT3G01500.2p  transcript_id AT3G01500.2  
At3g01510	chr3:000201368	0.0	C/201368-201682,201174-201280,200552-201011,200383-200451,200166-200287,199859-200074,199649-199754,199424-199536,199104-199248,198855-198977	AT3G01510.1  CDS  gene_syn F4P13.6, F4P13_6  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function protein binding|GO:0005515||IEA  go_function protein tyrosine/serine/threonine phosphatase activity|GO:0008138||IEA  product 5 -AMP-activated protein kinase beta-1 subunit-related  note 5 -AMP-activated protein kinase beta-1 subunit-related; FUNCTIONS IN: protein binding, protein tyrosine/serine/threonine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, dual specificity (InterPro:IPR000340), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: SEX4 (STARCH-EXCESS 4); polysaccharide binding / protein tyrosine/serine/threonine phosphatase (TAIR:AT3G52180.1); Has 621 Blast hits to 621 proteins in 115 species: Archae - 0; Bacteria - 10; Metazoa - 285; Fungi - 43; Plants - 173; Viruses - 12; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT3G01510.1p  transcript_id AT3G01510.1  protein_id AT3G01510.1p  transcript_id AT3G01510.1  
At3g01513	chr3:000202068	0.0	C/202068-202718	AT3G01513.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G14730.1); Has 48 Blast hits to 48 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G01513.1p  transcript_id AT3G01513.1  protein_id AT3G01513.1p  transcript_id AT3G01513.1  
At3g01516	chr3:000207426	0.0	W/207426-207989	AT3G01516.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G14690.1); Has 40 Blast hits to 40 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G01516.1p  transcript_id AT3G01516.1  protein_id AT3G01516.1p  transcript_id AT3G01516.1  
At3g01520	chr3:000208506	0.0	W/208506-208683,209100-209221,209360-209478,209813-209921	AT3G01520.1  CDS  gene_syn F4P13.7, F4P13_7  go_component plasma membrane|GO:0005886|17644812|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process response to stress|GO:0006950||IEA  go_process response to stress|GO:0006950||ISS  go_function molecular_function|GO:0003674||ND  product universal stress protein (USP) family protein  note universal stress protein (USP) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation, response to stress; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: universal stress protein (USP) family protein (TAIR:AT5G14680.1); Has 1147 Blast hits to 1145 proteins in 292 species: Archae - 54; Bacteria - 658; Metazoa - 30; Fungi - 22; Plants - 354; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT3G01520.1p  transcript_id AT3G01520.1  protein_id AT3G01520.1p  transcript_id AT3G01520.1  
At3g01530	chr3:000210980	0.0	C/210980-211151,210764-210893,210352-210670	AT3G01530.1  CDS  gene_syn AtMYB57, F4P13.8, F4P13_8, myb domain protein 57  gene AtMYB57  function Member of the R2R3 factor gene family.  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AtMYB57 (myb domain protein 57); DNA binding / transcription factor  note myb domain protein 57 (AtMYB57); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB24 (myb domain protein 24); DNA binding / transcription factor (TAIR:AT5G40350.1); Has 6221 Blast hits to 5769 proteins in 349 species: Archae - 0; Bacteria - 0; Metazoa - 621; Fungi - 297; Plants - 3734; Viruses - 4; Other Eukaryotes - 1565 (source: NCBI BLink).  protein_id AT3G01530.1p  transcript_id AT3G01530.1  protein_id AT3G01530.1p  transcript_id AT3G01530.1  
At3g01540	chr3:000215855	0.0	C/215855-216142,215615-215773,215401-215469,214520-214789,214070-214420,213716-213993,213311-213619,213077-213209	AT3G01540.1  CDS  gene_syn ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, ATDRH1, DEAD BOX RNA HELICASE 1, DRH1, F4P13.9, F4P13_9, RNA HELICASE DRH1  gene DRH1  function RNA HELICASE DRH1  go_function ATP-dependent RNA helicase activity|GO:0004004|9592148|IDA  go_function ATPase activity|GO:0016887|9592148|IDA  product DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase  note DEAD BOX RNA HELICASE 1 (DRH1); FUNCTIONS IN: ATPase activity, ATP-dependent RNA helicase activity; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), WW/Rsp5/WWP (InterPro:IPR001202), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding / protein binding (TAIR:AT5G14610.1); Has 32634 Blast hits to 32014 proteins in 1787 species: Archae - 613; Bacteria - 13781; Metazoa - 5541; Fungi - 3502; Plants - 1508; Viruses - 19; Other Eukaryotes - 7670 (source: NCBI BLink).  protein_id AT3G01540.1p  transcript_id AT3G01540.1  protein_id AT3G01540.1p  transcript_id AT3G01540.1  
At3g01540	chr3:000215855	0.0	C/215855-216142,215615-215773,215401-215469,214520-214789,214070-214420,213716-213993,213311-213619,213077-213212	AT3G01540.2  CDS  gene_syn ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, ATDRH1, DEAD BOX RNA HELICASE 1, DRH1, F4P13.9, F4P13_9, RNA HELICASE DRH1  gene DRH1  function RNA HELICASE DRH1  go_function ATP-dependent RNA helicase activity|GO:0004004|9592148|IDA  go_function ATPase activity|GO:0016887|9592148|IDA  product DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase  note DEAD BOX RNA HELICASE 1 (DRH1); FUNCTIONS IN: ATPase activity, ATP-dependent RNA helicase activity; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), WW/Rsp5/WWP (InterPro:IPR001202), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding / protein binding (TAIR:AT5G14610.1); Has 32574 Blast hits to 31954 proteins in 1787 species: Archae - 613; Bacteria - 13777; Metazoa - 5484; Fungi - 3502; Plants - 1509; Viruses - 19; Other Eukaryotes - 7670 (source: NCBI BLink).  protein_id AT3G01540.2p  transcript_id AT3G01540.2  protein_id AT3G01540.2p  transcript_id AT3G01540.2  
At3g01540	chr3:000215855	0.0	C/215855-216142,215615-215773,215401-215469,214520-214789,214070-214420,213716-213993,213311-213619,213077-213212	AT3G01540.3  CDS  gene_syn ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, ATDRH1, DEAD BOX RNA HELICASE 1, DRH1, F4P13.9, F4P13_9, RNA HELICASE DRH1  gene DRH1  function RNA HELICASE DRH1  go_function ATP-dependent RNA helicase activity|GO:0004004|9592148|IDA  go_function ATPase activity|GO:0016887|9592148|IDA  product DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase  note DEAD BOX RNA HELICASE 1 (DRH1); FUNCTIONS IN: ATPase activity, ATP-dependent RNA helicase activity; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), WW/Rsp5/WWP (InterPro:IPR001202), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding / protein binding (TAIR:AT5G14610.1); Has 32574 Blast hits to 31954 proteins in 1787 species: Archae - 613; Bacteria - 13777; Metazoa - 5484; Fungi - 3502; Plants - 1509; Viruses - 19; Other Eukaryotes - 7670 (source: NCBI BLink).  protein_id AT3G01540.3p  transcript_id AT3G01540.3  protein_id AT3G01540.3p  transcript_id AT3G01540.3  
At3g01540	chr3:000215855	0.0	C/215855-216142,215615-215773,215401-215469,214520-214789,214070-214420,213716-213993,213311-213619,213077-213212	AT3G01540.4  CDS  gene_syn ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, ATDRH1, DEAD BOX RNA HELICASE 1, DRH1, F4P13.9, F4P13_9, RNA HELICASE DRH1  gene DRH1  function RNA HELICASE DRH1  go_function ATP-dependent RNA helicase activity|GO:0004004|9592148|IDA  go_function ATPase activity|GO:0016887|9592148|IDA  product DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase  note DEAD BOX RNA HELICASE 1 (DRH1); FUNCTIONS IN: ATPase activity, ATP-dependent RNA helicase activity; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), WW/Rsp5/WWP (InterPro:IPR001202), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding / protein binding (TAIR:AT5G14610.1); Has 32574 Blast hits to 31954 proteins in 1787 species: Archae - 613; Bacteria - 13777; Metazoa - 5484; Fungi - 3502; Plants - 1509; Viruses - 19; Other Eukaryotes - 7670 (source: NCBI BLink).  protein_id AT3G01540.4p  transcript_id AT3G01540.4  protein_id AT3G01540.4p  transcript_id AT3G01540.4  
At3g01550	chr3:000218560	0.0	C/218560-218856,218326-218448,218105-218257,217911-217996,217728-217809,217521-217640,217359-217436,217122-217251,216947-217029	AT3G01550.1  CDS  gene_syn ATPPT2, F4P13.10, F4P13_10, PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2, PPT2  gene PPT2  go_component chloroplast|GO:0009507||IEA  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process triose phosphate transport|GO:0015717||ISS  go_function triose-phosphate transmembrane transporter activity|GO:0009670||ISS  go_function antiporter activity|GO:0015297||ISS  product PPT2 (PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2); antiporter/ triose-phosphate transmembrane transporter  note PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2 (PPT2); FUNCTIONS IN: antiporter activity, triose-phosphate transmembrane transporter activity; INVOLVED IN: triose phosphate transport, transport; LOCATED IN: integral to membrane, chloroplast, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Tpt phosphate/phosphoenolpyruvate translocator (InterPro:IPR004696), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: CUE1 (CAB UNDEREXPRESSED 1); antiporter/ triose-phosphate transmembrane transporter (TAIR:AT5G33320.1); Has 1681 Blast hits to 1680 proteins in 215 species: Archae - 4; Bacteria - 34; Metazoa - 465; Fungi - 260; Plants - 749; Viruses - 0; Other Eukaryotes - 169 (source: NCBI BLink).  protein_id AT3G01550.1p  transcript_id AT3G01550.1  protein_id AT3G01550.1p  transcript_id AT3G01550.1  
At3g01560	chr3:000219884	0.0	W/219884-220192,220313-220594,220763-221707	AT3G01560.1  CDS  gene_syn F4P13.11, F4P13_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product proline-rich family protein  note proline-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Protein of unknown function DUF1421 (InterPro:IPR010820), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT5G14540.1); Has 76923 Blast hits to 40691 proteins in 1566 species: Archae - 110; Bacteria - 8440; Metazoa - 31149; Fungi - 13515; Plants - 10280; Viruses - 1804; Other Eukaryotes - 11625 (source: NCBI BLink).  protein_id AT3G01560.1p  transcript_id AT3G01560.1  protein_id AT3G01560.1p  transcript_id AT3G01560.1  
At3g01570	chr3:000222671	0.0	C/222671-222778,222152-222595	AT3G01570.1  CDS  gene_syn F4P13.12, F4P13_12  go_component monolayer-surrounded lipid storage body|GO:0012511||IEA  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  go_process lipid storage|GO:0019915||ISS  go_function molecular_function|GO:0003674||ND  product glycine-rich protein / oleosin  note glycine-rich protein / oleosin; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lipid storage; LOCATED IN: monolayer-surrounded lipid storage body, integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136); BEST Arabidopsis thaliana protein match is: OLEO2 (OLEOSIN 2) (TAIR:AT5G40420.1); Has 384 Blast hits to 384 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 384; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G01570.1p  transcript_id AT3G01570.1  protein_id AT3G01570.1p  transcript_id AT3G01570.1  
At3g01572	chr3:000222968	0.0	C/222968-223081	AT3G01572.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G01572.1p  transcript_id AT3G01572.1  protein_id AT3G01572.1p  transcript_id AT3G01572.1  
At3g01580	chr3:000223529	0.0	C/223529-225454	AT3G01580.1  CDS  gene_syn F4P13.34, F4P13_34  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: CRR22 (CHLORORESPIRATORY REDUCTION22); endonuclease (TAIR:AT1G11290.1); Has 14358 Blast hits to 4729 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 56; Plants - 14009; Viruses - 0; Other Eukaryotes - 258 (source: NCBI BLink).  protein_id AT3G01580.1p  transcript_id AT3G01580.1  protein_id AT3G01580.1p  transcript_id AT3G01580.1  
At3g01590	chr3:000226647	0.0	W/226647-226724,226957-227031,227105-227161,227251-227408,227518-227649,227746-227848,227939-228038,228129-228346	AT3G01590.1  CDS  gene_syn F4P13.13, F4P13_13  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function isomerase activity|GO:0016853||IEA  go_function carbohydrate binding|GO:0030246||IEA  go_component cellular_component|GO:0005575||ND  go_process galactose metabolic process|GO:0006012||ISS  go_function aldose 1-epimerase activity|GO:0004034||ISS  product aldose 1-epimerase family protein  note aldose 1-epimerase family protein; FUNCTIONS IN: isomerase activity, carbohydrate binding, aldose 1-epimerase activity, catalytic activity; INVOLVED IN: galactose metabolic process, carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Aldose 1-epimerase (InterPro:IPR008183), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718); BEST Arabidopsis thaliana protein match is: aldose 1-epimerase family protein (TAIR:AT5G14500.1); Has 1224 Blast hits to 1223 proteins in 478 species: Archae - 0; Bacteria - 788; Metazoa - 38; Fungi - 84; Plants - 134; Viruses - 0; Other Eukaryotes - 180 (source: NCBI BLink).  protein_id AT3G01590.1p  transcript_id AT3G01590.1  protein_id AT3G01590.1p  transcript_id AT3G01590.1  
At3g01590	chr3:000226647	0.0	W/226647-226724,226957-227031,227105-227161,227251-227408,227518-227649,227746-227848,227939-228038,228129-228346	AT3G01590.2  CDS  gene_syn F4P13.13, F4P13_13  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function isomerase activity|GO:0016853||IEA  go_function carbohydrate binding|GO:0030246||IEA  go_component cellular_component|GO:0005575||ND  go_process galactose metabolic process|GO:0006012||ISS  go_function aldose 1-epimerase activity|GO:0004034||ISS  product aldose 1-epimerase family protein  note aldose 1-epimerase family protein; FUNCTIONS IN: isomerase activity, carbohydrate binding, aldose 1-epimerase activity, catalytic activity; INVOLVED IN: galactose metabolic process, carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Aldose 1-epimerase (InterPro:IPR008183), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718); BEST Arabidopsis thaliana protein match is: aldose 1-epimerase family protein (TAIR:AT5G14500.1); Has 1224 Blast hits to 1223 proteins in 478 species: Archae - 0; Bacteria - 788; Metazoa - 38; Fungi - 84; Plants - 134; Viruses - 0; Other Eukaryotes - 180 (source: NCBI BLink).  protein_id AT3G01590.2p  transcript_id AT3G01590.2  protein_id AT3G01590.2p  transcript_id AT3G01590.2  
At3g01600	chr3:000229365	0.0	W/229365-229372,229714-229846,229921-230107,230237-230718,230803-231105	AT3G01600.1  CDS  gene_syn Arabidopsis NAC domain containing protein 44, F4P13.14, F4P13_14, anac044  gene anac044  go_process regulation of transcription|GO:0045449||IEA  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac044 (Arabidopsis NAC domain containing protein 44); transcription factor  note Arabidopsis NAC domain containing protein 44 (anac044); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac085 (Arabidopsis NAC domain containing protein 85); transcription factor (TAIR:AT5G14490.1); Has 1041 Blast hits to 1038 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1041; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G01600.1p  transcript_id AT3G01600.1  protein_id AT3G01600.1p  transcript_id AT3G01600.1  
At3g01610	chr3:000231787	0.0	W/231787-232711,232807-233393,233481-233633,233721-233837,233931-234035,234200-234265,234340-234600,234712-234861,234959-235057	AT3G01610.1  CDS  gene_syn CDC48C, F4P13.15, F4P13_15, emb1354, embryo defective 1354  gene CDC48C  function AAA-type ATPase - Over 90% homologous to CDC48a  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function ATPase activity|GO:0016887||ISS  product CDC48C; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding  note CDC48C; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: embryonic development ending in seed dormancy; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: cell division cycle protein 48, putative / CDC48, putative (TAIR:AT5G03340.1); Has 44379 Blast hits to 26333 proteins in 1885 species: Archae - 1081; Bacteria - 15141; Metazoa - 7091; Fungi - 4121; Plants - 2934; Viruses - 42; Other Eukaryotes - 13969 (source: NCBI BLink).  protein_id AT3G01610.1p  transcript_id AT3G01610.1  protein_id AT3G01610.1p  transcript_id AT3G01610.1  
At3g01620	chr3:000236667	0.0	C/236667-236729,235327-236430	AT3G01620.1  CDS  gene_syn F4P13.16, F4P13_16  go_component membrane|GO:0016020||IEA  go_process protein amino acid N-linked glycosylation|GO:0006487||IEA  go_function acetylglucosaminyltransferase activity|GO:0008375||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyl transferase family 17 protein  note glycosyl transferase family 17 protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: protein amino acid N-linked glycosylation; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 17 (InterPro:IPR006813); BEST Arabidopsis thaliana protein match is: glycosyl transferase family 17 protein (TAIR:AT5G14480.1); Has 1088 Blast hits to 1088 proteins in 55 species: Archae - 0; Bacteria - 24; Metazoa - 46; Fungi - 23; Plants - 67; Viruses - 4; Other Eukaryotes - 924 (source: NCBI BLink).  protein_id AT3G01620.1p  transcript_id AT3G01620.1  protein_id AT3G01620.1p  transcript_id AT3G01620.1  
At3g01630	chr3:000237270	0.0	W/237270-238925	AT3G01630.1  CDS  gene_syn F4P13.17, F4P13_17  product unknown protein  note EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: NFD4 (NUCLEAR FUSION DEFECTIVE 4) (TAIR:AT1G31470.1); Has 747 Blast hits to 740 proteins in 168 species: Archae - 13; Bacteria - 171; Metazoa - 6; Fungi - 105; Plants - 313; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).  protein_id AT3G01630.1p  transcript_id AT3G01630.1  protein_id AT3G01630.1p  transcript_id AT3G01630.1  
At3g01640	chr3:000239418	0.0	W/239418-239651,239883-240032,240124-240312,240395-240511,240677-240837,240961-241198	AT3G01640.1  CDS  gene_syn F4P13.18, F4P13_18  go_component cytoplasm|GO:0005737||IEA  go_process metabolic process|GO:0008152||IEA  go_process phosphorylation|GO:0016310||IEA  go_function galactokinase activity|GO:0004335||ISS  go_function ATP binding|GO:0005524||ISS  go_function poly(U) binding|GO:0008266|17511964|IDA  product GHMP kinase family protein  note GHMP kinase family protein; FUNCTIONS IN: poly(U) binding, galactokinase activity, ATP binding; INVOLVED IN: metabolic process, phosphorylation; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mevalonate and galactokinase (InterPro:IPR006206), GHMP kinase (InterPro:IPR006204), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721), GHMP kinase, C-terminal (InterPro:IPR013750); BEST Arabidopsis thaliana protein match is: GHMP kinase-related (TAIR:AT5G14470.1); Has 300 Blast hits to 300 proteins in 101 species: Archae - 27; Bacteria - 120; Metazoa - 11; Fungi - 2; Plants - 37; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).  protein_id AT3G01640.1p  transcript_id AT3G01640.1  protein_id AT3G01640.1p  transcript_id AT3G01640.1  
At3g01650	chr3:000242734	0.0	W/242734-243159,243254-243338,243413-243553,243638-243751,243860-243957,244049-244128,244243-244348,244440-244567,244668-244821,244925-245062	AT3G01650.1  CDS  gene_syn F4P13.19, F4P13_19, RGLG1, RING domain Ligase1  gene RGLG1  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component plasma membrane|GO:0005886|17586653|IDA  go_process cytokinin metabolic process|GO:0009690|17586653|IGI  go_process auxin metabolic process|GO:0009850|17586653|IGI  product RGLG1 (RING domain Ligase1); protein binding / zinc ion binding  note RING domain Ligase1 (RGLG1); FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: N-terminal protein myristoylation, cytokinin metabolic process, auxin metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Copine (InterPro:IPR010734), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: RGLG2 (RING domain Ligase2); ubiquitin-protein ligase (TAIR:AT5G14420.4); Has 22655 Blast hits to 11986 proteins in 766 species: Archae - 24; Bacteria - 2755; Metazoa - 6973; Fungi - 2863; Plants - 4151; Viruses - 732; Other Eukaryotes - 5157 (source: NCBI BLink).  protein_id AT3G01650.1p  transcript_id AT3G01650.1  protein_id AT3G01650.1p  transcript_id AT3G01650.1  
At3g01660	chr3:000245532	0.0	W/245532-246047,246127-246432	AT3G01660.1  CDS  gene_syn F4P13.20, F4P13_20  go_process metabolic process|GO:0008152||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  product methyltransferase  note methyltransferase; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: methyltransferase (TAIR:AT4G29590.1); Has 914 Blast hits to 914 proteins in 224 species: Archae - 20; Bacteria - 409; Metazoa - 25; Fungi - 12; Plants - 43; Viruses - 0; Other Eukaryotes - 405 (source: NCBI BLink).  protein_id AT3G01660.1p  transcript_id AT3G01660.1  protein_id AT3G01660.1p  transcript_id AT3G01660.1  
At3g01670	chr3:000247288	0.0	W/247288-247836,247918-247998,248069-248538,248617-248726,248827-248969,249044-249508,249611-250261	AT3G01670.1  CDS  gene_syn F4P13.21, F4P13_21  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01680.1); Has 45 Blast hits to 42 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G01670.1p  transcript_id AT3G01670.1  protein_id AT3G01670.1p  transcript_id AT3G01670.1  
At3g01680	chr3:000252033	0.0	W/252033-252284,252369-252464,252804-253246,253319-253428,253506-253648,253740-253987,254083-254344,254484-254780,254875-255246	AT3G01680.1  CDS  gene_syn F4P13.22, F4P13_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 49 Blast hits to 46 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G01680.1p  transcript_id AT3G01680.1  protein_id AT3G01680.1p  transcript_id AT3G01680.1  
At3g01690	chr3:000256753	0.0	W/256753-257054,257319-257355,257457-257693,257788-257835,257918-258379	AT3G01690.1  CDS  gene_syn F4P13.23, F4P13_23  product unknown protein  note EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G14390.1); Has 2954 Blast hits to 2948 proteins in 496 species: Archae - 2; Bacteria - 741; Metazoa - 618; Fungi - 134; Plants - 170; Viruses - 6; Other Eukaryotes - 1283 (source: NCBI BLink).  protein_id AT3G01690.1p  transcript_id AT3G01690.1  protein_id AT3G01690.1p  transcript_id AT3G01690.1  
At3g01700	chr3:000258981	0.0	W/258981-259391	AT3G01700.1  CDS  gene_syn AGP11, Arabinogalactan protein 11, AtAGP11, F4P13.24, F4P13_24  gene AGP11  function Encodes an arabinogalactan protein that is expressed in pollen, pollen sac and pollen tube. Loss of AGP11 function results in decreased fertility due to defects in pollen tube growth.  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process pollen tube growth|GO:0009860|18644001|IMP  product AGP11  note AGP11; INVOLVED IN: pollen tube growth; LOCATED IN: anchored to membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 17500 Blast hits to 6935 proteins in 723 species: Archae - 47; Bacteria - 3901; Metazoa - 2384; Fungi - 1410; Plants - 1642; Viruses - 544; Other Eukaryotes - 7572 (source: NCBI BLink).  protein_id AT3G01700.1p  transcript_id AT3G01700.1  protein_id AT3G01700.1p  transcript_id AT3G01700.1  
At3g01705	chr3:000259634	0.0	W/259634-259705	AT3G01705.1  tRNA  gene_syn 60208.TRNA-PRO-1, 60240.TRNA-PRO-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: AGG)  transcript_id AT3G01705.1  
At3g01710	chr3:000261688	0.0	C/261688-261738,261089-261592,260752-260994,260629-260687,260472-260537,260314-260377,260072-260236,259952-259966	AT3G01710.2  CDS  gene_syn F4P13.26, F4P13_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Targeting for Xklp2 (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27350.1); Has 1478 Blast hits to 1129 proteins in 153 species: Archae - 0; Bacteria - 54; Metazoa - 662; Fungi - 96; Plants - 192; Viruses - 10; Other Eukaryotes - 464 (source: NCBI BLink).  protein_id AT3G01710.2p  transcript_id AT3G01710.2  protein_id AT3G01710.2p  transcript_id AT3G01710.2  
At3g01710	chr3:000261688	0.0	C/261688-261738,261089-261592,260752-260994,260629-260687,260472-260546,260314-260377,260072-260236,259952-259966	AT3G01710.1  CDS  gene_syn F4P13.26, F4P13_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Targeting for Xklp2 (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27350.1); Has 1029 Blast hits to 851 proteins in 111 species: Archae - 0; Bacteria - 24; Metazoa - 456; Fungi - 52; Plants - 192; Viruses - 7; Other Eukaryotes - 298 (source: NCBI BLink).  protein_id AT3G01710.1p  transcript_id AT3G01710.1  protein_id AT3G01710.1p  transcript_id AT3G01710.1  
At3g01720	chr3:000265313	0.0	C/265313-265608,264882-265052,264553-264796,264244-264444,263688-264163,263442-263606,263100-263343,262412-263023	AT3G01720.1  CDS  gene_syn F4P13.27  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13500.3); Has 169 Blast hits to 95 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT3G01720.1p  transcript_id AT3G01720.1  protein_id AT3G01720.1p  transcript_id AT3G01720.1  
At3g01730	chr3:000266628	0.0	W/266628-266891	AT3G01730.1  CDS  gene_syn F4P13.28  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: root; Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G01730.1p  transcript_id AT3G01730.1  protein_id AT3G01730.1p  transcript_id AT3G01730.1  
At3g01740	chr3:000268118	0.0	W/268118-268498	AT3G01740.1  CDS  gene_syn F4P13.29  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L37, mitochondrial (InterPro:IPR013870); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G14290.1); Has 117 Blast hits to 117 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 56; Fungi - 22; Plants - 27; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT3G01740.1p  transcript_id AT3G01740.1  protein_id AT3G01740.1p  transcript_id AT3G01740.1  
At3g01750	chr3:000270615	0.0	W/270615-271331,271414-272691	AT3G01750.1  CDS  gene_syn F28J7.8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT3G04140.1); Has 25307 Blast hits to 11973 proteins in 490 species: Archae - 32; Bacteria - 1483; Metazoa - 13550; Fungi - 1447; Plants - 1470; Viruses - 97; Other Eukaryotes - 7228 (source: NCBI BLink).  protein_id AT3G01750.1p  transcript_id AT3G01750.1  protein_id AT3G01750.1p  transcript_id AT3G01750.1  
At3g01760	chr3:000273299	0.0	W/273299-273561,273649-274041,274130-274523,274605-274710,274810-274901,275002-275070,275148-275270	AT3G01760.1  CDS  gene_syn F28J7.9  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_function amine transmembrane transporter activity|GO:0005275||ISS  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product lysine and histidine specific transporter, putative  note lysine and histidine specific transporter, putative; FUNCTIONS IN: amino acid transmembrane transporter activity, amine transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: lysine and histidine specific transporter, putative (TAIR:AT1G61270.1); Has 3025 Blast hits to 3019 proteins in 265 species: Archae - 3; Bacteria - 183; Metazoa - 1122; Fungi - 474; Plants - 821; Viruses - 3; Other Eukaryotes - 419 (source: NCBI BLink).  protein_id AT3G01760.1p  transcript_id AT3G01760.1  protein_id AT3G01760.1p  transcript_id AT3G01760.1  
At3g01770	chr3:000277307	0.0	C/277307-278386,277181-277229,277011-277094,276502-276585,276303-276418,276152-276218,275933-276054,275582-275842	AT3G01770.1  CDS  gene_syn ATBET10, Arabidopsis thaliana BROMODOMAIN AND EXTRATERMINAL DOMAIN PROTEIN 10, F28J7.10  gene ATBET10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product ATBET10 (Arabidopsis thaliana BROMODOMAIN AND EXTRATERMINAL DOMAIN PROTEIN 10); DNA binding  note Arabidopsis thaliana BROMODOMAIN AND EXTRATERMINAL DOMAIN PROTEIN 10 (ATBET10); FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: ATBET9 (Arabidopsis thaliana Bromodomain and Extraterminal Domain protein 9); DNA binding (TAIR:AT5G14270.1); Has 10636 Blast hits to 8190 proteins in 445 species: Archae - 19; Bacteria - 529; Metazoa - 5538; Fungi - 1309; Plants - 426; Viruses - 19; Other Eukaryotes - 2796 (source: NCBI BLink).  protein_id AT3G01770.1p  transcript_id AT3G01770.1  protein_id AT3G01770.1p  transcript_id AT3G01770.1  
At3g01780	chr3:000279171	0.0	W/279171-280304,280409-281005,281174-281535,281624-281927,282030-282152,282310-282759,282839-283399	AT3G01780.1  CDS  gene_syn F28J7.11, F28J7_11, TPLATE  gene TPLATE  function Encodes TPLATE, a cytokinesis protein targeted to the cell plate. Functions in vesicle-trafficking events required for site-specific cell wall modifications during pollen germination and for anchoring of the cell plate to the mother wall at the correct cortical position.  go_component plasma membrane|GO:0005886|17317660|IDA  go_function binding|GO:0005488||IEA  go_component nucleus|GO:0005634|15469496|IDA  go_component cytoplasm|GO:0005737|15469496|IDA  go_component cell plate|GO:0009504|17189342|IDA  go_component phragmoplast|GO:0009524|15469496|IDA  go_process cytokinesis|GO:0000910|17189342|IMP  go_process pollen development|GO:0009555|17189342|IMP  product TPLATE; binding  note TPLATE; FUNCTIONS IN: binding; INVOLVED IN: cytokinesis, pollen development; LOCATED IN: nucleus, plasma membrane, phragmoplast, cytoplasm, cell plate; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 21742 Blast hits to 8761 proteins in 562 species: Archae - 62; Bacteria - 553; Metazoa - 10922; Fungi - 1787; Plants - 627; Viruses - 454; Other Eukaryotes - 7337 (source: NCBI BLink).  protein_id AT3G01780.1p  transcript_id AT3G01780.1  protein_id AT3G01780.1p  transcript_id AT3G01780.1  
At3g01790	chr3:000285536	0.0	C/285536-285583,285123-285194,284755-284921,284529-284640,283880-284098	AT3G01790.1  CDS  gene_syn F28J7.12, F28J7_12  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L13 family protein  note ribosomal protein L13 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13, bacterial-type (InterPro:IPR005823), Ribosomal protein L13 (InterPro:IPR005822); BEST Arabidopsis thaliana protein match is: emb1473 (embryo defective 1473); structural constituent of ribosome (TAIR:AT1G78630.1); Has 5130 Blast hits to 5130 proteins in 1478 species: Archae - 7; Bacteria - 2810; Metazoa - 100; Fungi - 88; Plants - 73; Viruses - 0; Other Eukaryotes - 2052 (source: NCBI BLink).  protein_id AT3G01790.1p  transcript_id AT3G01790.1  protein_id AT3G01790.1p  transcript_id AT3G01790.1  
At3g01790	chr3:000285536	0.0	C/285536-285583,285123-285194,284755-284921,284529-284640,283880-284098	AT3G01790.2  CDS  gene_syn F28J7.12, F28J7_12  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L13 family protein  note ribosomal protein L13 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13, bacterial-type (InterPro:IPR005823), Ribosomal protein L13 (InterPro:IPR005822); BEST Arabidopsis thaliana protein match is: emb1473 (embryo defective 1473); structural constituent of ribosome (TAIR:AT1G78630.1); Has 5130 Blast hits to 5130 proteins in 1478 species: Archae - 7; Bacteria - 2810; Metazoa - 100; Fungi - 88; Plants - 73; Viruses - 0; Other Eukaryotes - 2052 (source: NCBI BLink).  protein_id AT3G01790.2p  transcript_id AT3G01790.2  protein_id AT3G01790.2p  transcript_id AT3G01790.2  
At3g01800	chr3:000286020	0.0	W/286020-286230,286421-286564,286637-286752,286857-286948,287046-287067,287145-287213,287316-287384,287463-287543	AT3G01800.1  CDS  gene_syn F28J7.13, F28J7_13  go_process translation|GO:0006412||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process translation|GO:0006412||ISS  product ribosome recycling factor family protein / ribosome releasing factor family protein  note ribosome recycling factor family protein / ribosome releasing factor family protein; INVOLVED IN: translation; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome recycling factor, bacterial-like (InterPro:IPR015998), Ribosome recycling factor (InterPro:IPR002661); BEST Arabidopsis thaliana protein match is: RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR) (TAIR:AT3G63190.1); Has 5299 Blast hits to 5299 proteins in 1469 species: Archae - 0; Bacteria - 2911; Metazoa - 102; Fungi - 44; Plants - 57; Viruses - 0; Other Eukaryotes - 2185 (source: NCBI BLink).  protein_id AT3G01800.1p  transcript_id AT3G01800.1  protein_id AT3G01800.1p  transcript_id AT3G01800.1  
At3g01810	chr3:000289218	0.0	W/289218-289916,290000-290775,290854-291133,291217-291447,291530-291703,291787-291966,292056-292169,292246-292557	AT3G01810.1  CDS  gene_syn F28J7.14, F28J7_14  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2); Has 1293 Blast hits to 384 proteins in 97 species: Archae - 2; Bacteria - 96; Metazoa - 212; Fungi - 99; Plants - 59; Viruses - 0; Other Eukaryotes - 825 (source: NCBI BLink).  protein_id AT3G01810.1p  transcript_id AT3G01810.1  protein_id AT3G01810.1p  transcript_id AT3G01810.1  
At3g01810	chr3:000289218	0.0	W/289218-289916,290000-290775,290854-291133,291217-291447,291530-291703,291787-291966,292056-292169,292250-292375	AT3G01810.2  CDS  gene_syn F28J7.14, F28J7_14  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2); Has 1224 Blast hits to 385 proteins in 102 species: Archae - 2; Bacteria - 107; Metazoa - 205; Fungi - 107; Plants - 62; Viruses - 0; Other Eukaryotes - 741 (source: NCBI BLink).  protein_id AT3G01810.2p  transcript_id AT3G01810.2  protein_id AT3G01810.2p  transcript_id AT3G01810.2  
At3g01820	chr3:000295028	0.0	C/295028-295357,294531-294671,294209-294385,293981-294124	AT3G01820.1  CDS  gene_syn F28J7.15, F28J7_15  go_component mitochondrion|GO:0005739||IEA  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_process anaerobic respiration|GO:0009061||IEA  go_process nucleotide metabolic process|GO:0009117||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleobase, nucleoside, nucleotide kinase activity|GO:0019205||IEA  go_function nucleotide kinase activity|GO:0019201||ISS  product adenylate kinase family protein  note adenylate kinase family protein; FUNCTIONS IN: nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, ATP binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: ADK (ADENOSINE KINASE); adenylate kinase/ nucleotide kinase (TAIR:AT2G37250.1); Has 6349 Blast hits to 6292 proteins in 1637 species: Archae - 58; Bacteria - 3459; Metazoa - 744; Fungi - 256; Plants - 228; Viruses - 0; Other Eukaryotes - 1604 (source: NCBI BLink).  protein_id AT3G01820.1p  transcript_id AT3G01820.1  protein_id AT3G01820.1p  transcript_id AT3G01820.1  
At3g01830	chr3:000296114	0.0	W/296114-296450,299071-299147	AT3G01830.2  CDS  gene_syn F28J7.16, F28J7_16  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calmodulin-related protein, putative  note calmodulin-related protein, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand type (InterPro:IPR011992); Has 195 Blast hits to 194 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 8; Plants - 171; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G01830.2p  transcript_id AT3G01830.2  protein_id AT3G01830.2p  transcript_id AT3G01830.2  
At3g01830	chr3:000296114	0.0	W/296114-296554	AT3G01830.1  CDS  gene_syn F28J7.16, F28J7_16  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calmodulin-related protein, putative  note calmodulin-related protein, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT1G76650.1); Has 4435 Blast hits to 4399 proteins in 718 species: Archae - 0; Bacteria - 4; Metazoa - 1907; Fungi - 790; Plants - 1136; Viruses - 0; Other Eukaryotes - 598 (source: NCBI BLink).  protein_id AT3G01830.1p  transcript_id AT3G01830.1  protein_id AT3G01830.1p  transcript_id AT3G01830.1  
At3g01840	chr3:000298231	0.0	C/298231-298634,296582-298142	AT3G01840.1  CDS  gene_syn F28J7.37, F28J7_37  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process cell wall macromolecule catabolic process|GO:0016998||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (TAIR:AT2G33580.1); Has 36433 Blast hits to 36215 proteins in 1947 species: Archae - 33; Bacteria - 1436; Metazoa - 15780; Fungi - 1781; Plants - 12567; Viruses - 184; Other Eukaryotes - 4652 (source: NCBI BLink).  protein_id AT3G01840.1p  transcript_id AT3G01840.1  protein_id AT3G01840.1p  transcript_id AT3G01840.1  
At3g01850	chr3:000301874	0.0	C/301874-301987,301494-301498,301324-301386,301119-301225,300954-301051,300785-300877,300661-300702,300428-300583	AT3G01850.1  CDS  gene_syn F28J7.18, F28J7_18  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function ribulose-phosphate 3-epimerase activity|GO:0004750||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function ribulose-phosphate 3-epimerase activity|GO:0004750||ISS  product ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative  note ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative; FUNCTIONS IN: ribulose-phosphate 3-epimerase activity, catalytic activity; INVOLVED IN: carbohydrate metabolic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate 3-epimerase (InterPro:IPR000056), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative (TAIR:AT1G63290.1); Has 6149 Blast hits to 6146 proteins in 1420 species: Archae - 32; Bacteria - 2858; Metazoa - 158; Fungi - 90; Plants - 83; Viruses - 0; Other Eukaryotes - 2928 (source: NCBI BLink).  protein_id AT3G01850.1p  transcript_id AT3G01850.1  protein_id AT3G01850.1p  transcript_id AT3G01850.1  
At3g01850	chr3:000301874	0.0	C/301874-301987,301494-301498,301324-301386,301119-301225,300954-301051,300785-300877,300661-300702,300428-300583	AT3G01850.2  CDS  gene_syn F28J7.18, F28J7_18  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function ribulose-phosphate 3-epimerase activity|GO:0004750||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function ribulose-phosphate 3-epimerase activity|GO:0004750||ISS  product ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative  note ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative; FUNCTIONS IN: ribulose-phosphate 3-epimerase activity, catalytic activity; INVOLVED IN: carbohydrate metabolic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate 3-epimerase (InterPro:IPR000056), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative (TAIR:AT1G63290.1); Has 6149 Blast hits to 6146 proteins in 1420 species: Archae - 32; Bacteria - 2858; Metazoa - 158; Fungi - 90; Plants - 83; Viruses - 0; Other Eukaryotes - 2928 (source: NCBI BLink).  protein_id AT3G01850.2p  transcript_id AT3G01850.2  protein_id AT3G01850.2p  transcript_id AT3G01850.2  
At3g01860	chr3:000302869	0.0	W/302869-303046,303753-303836,303920-304329	AT3G01860.1  CDS  gene_syn F28J7.19, F28J7_19  go_component chloroplast|GO:0009507||IEA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27210.1); Has 38 Blast hits to 38 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G01860.1p  transcript_id AT3G01860.1  protein_id AT3G01860.1p  transcript_id AT3G01860.1  
At3g01860	chr3:000303767	0.0	W/303767-303836,303920-304329	AT3G01860.2  CDS  gene_syn F28J7.19, F28J7_19  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27210.1); Has 38 Blast hits to 38 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G01860.2p  transcript_id AT3G01860.2  protein_id AT3G01860.2p  transcript_id AT3G01860.2  
At3g01870	chr3:000305276	0.0	W/305276-307027	AT3G01870.1  CDS  gene_syn F28J7.20, F28J7_20  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946, plant (InterPro:IPR009291); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01880.1); Has 176 Blast hits to 176 proteins in 50 species: Archae - 0; Bacteria - 13; Metazoa - 18; Fungi - 61; Plants - 83; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G01870.1p  transcript_id AT3G01870.1  protein_id AT3G01870.1p  transcript_id AT3G01870.1  
At3g01880	chr3:000307782	0.0	W/307782-309560	AT3G01880.1  CDS  gene_syn F1C9.34  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946, plant (InterPro:IPR009291); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01870.1); Has 188 Blast hits to 188 proteins in 55 species: Archae - 0; Bacteria - 12; Metazoa - 26; Fungi - 70; Plants - 79; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G01880.1p  transcript_id AT3G01880.1  protein_id AT3G01880.1p  transcript_id AT3G01880.1  
At3g01890	chr3:000310332	0.0	W/310332-311656,311721-311772	AT3G01890.1  CDS  gene_syn F1C9.33, F1C9_33  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SWIB complex BAF60b domain-containing protein  note SWIB complex BAF60b domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 (InterPro:IPR003121); BEST Arabidopsis thaliana protein match is: CHC1 (TAIR:AT5G14170.1); Has 623 Blast hits to 611 proteins in 152 species: Archae - 0; Bacteria - 59; Metazoa - 258; Fungi - 189; Plants - 72; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT3G01890.1p  transcript_id AT3G01890.1  protein_id AT3G01890.1p  transcript_id AT3G01890.1  
At3g01900	chr3:000312359	0.0	C/312359-313849	AT3G01900.1  CDS  gene_syn CYP94B2, F1C9.32, F1C9_32  gene CYP94B2  function member of CYP94B  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP94B2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP94B2; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP94B3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G48520.1); Has 17783 Blast hits to 17731 proteins in 1019 species: Archae - 19; Bacteria - 1543; Metazoa - 8160; Fungi - 3311; Plants - 3965; Viruses - 3; Other Eukaryotes - 782 (source: NCBI BLink).  protein_id AT3G01900.1p  transcript_id AT3G01900.1  protein_id AT3G01900.1p  transcript_id AT3G01900.1  
At3g01910	chr3:000316554	0.0	C/316554-316641,316367-316485,316188-316283,315954-316064,315761-315862,315414-315461,315113-315328,314919-315035	AT3G01910.2  CDS  gene_syn AT-SO, AtSO, F28J7.38, F28J7_38, SOX, SULFITE OXIDASE  gene SOX  function Encodes a homodimeric Mo-enzyme with molybdopterin as organic component of the molybdenum cofactor. It lacks the heme domain that other eukaryotic Mo-enzymes possess and has no redox-active centers other than the molybdenum. SO protein has been found in all parts of the plant. The plant SO combines its enzymatic sulfite oxidation with a subsequent nonenzymatic step using its reaction product H2O2 as intermediate for oxidizing another molecule of sulfite.  go_component peroxisome|GO:0005777|17951448|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component peroxisome|GO:0005777|15653809|IDA  go_process sulfur metabolic process|GO:0006790|11598126|IDA  go_process sulfur metabolic process|GO:0006790||ISS  go_process response to sulfur dioxide|GO:0010477|17425719|IMP  go_process chlorophyll metabolic process|GO:0015994|17425719|IMP  go_function sulfite oxidase activity|GO:0008482|11598126|IDA  go_function sulfite oxidase activity|GO:0008482||ISS  product SOX (SULFITE OXIDASE); sulfite oxidase  note SULFITE OXIDASE (SOX); FUNCTIONS IN: sulfite oxidase activity; INVOLVED IN: sulfur metabolic process, response to sulfur dioxide, chlorophyll metabolic process; LOCATED IN: mitochondrion, peroxisome; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), Eukaryotic molybdopterin oxidoreductase (InterPro:IPR008335), Moybdenum cofactor oxidoreductase, dimerisation (InterPro:IPR005066), Oxidoreductase, molybdopterin binding (InterPro:IPR000572); BEST Arabidopsis thaliana protein match is: NIA1 (NITRATE REDUCTASE 1); nitrate reductase (TAIR:AT1G77760.1); Has 2584 Blast hits to 2583 proteins in 576 species: Archae - 59; Bacteria - 1280; Metazoa - 123; Fungi - 176; Plants - 184; Viruses - 0; Other Eukaryotes - 762 (source: NCBI BLink).  protein_id AT3G01910.2p  transcript_id AT3G01910.2  protein_id AT3G01910.2p  transcript_id AT3G01910.2  
At3g01910	chr3:000317015	0.0	C/317015-317053,316188-316280,315954-316064,315761-315862,315414-315461,315113-315328,314919-315035	AT3G01910.3  CDS  gene_syn AT-SO, AtSO, F28J7.38, F28J7_38, SOX, SULFITE OXIDASE  gene SOX  function Encodes a homodimeric Mo-enzyme with molybdopterin as organic component of the molybdenum cofactor. It lacks the heme domain that other eukaryotic Mo-enzymes possess and has no redox-active centers other than the molybdenum. SO protein has been found in all parts of the plant. The plant SO combines its enzymatic sulfite oxidation with a subsequent nonenzymatic step using its reaction product H2O2 as intermediate for oxidizing another molecule of sulfite.  go_component peroxisome|GO:0005777|17951448|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component peroxisome|GO:0005777|15653809|IDA  go_process sulfur metabolic process|GO:0006790|11598126|IDA  go_process sulfur metabolic process|GO:0006790||ISS  go_process response to sulfur dioxide|GO:0010477|17425719|IMP  go_process chlorophyll metabolic process|GO:0015994|17425719|IMP  go_function sulfite oxidase activity|GO:0008482|11598126|IDA  go_function sulfite oxidase activity|GO:0008482||ISS  product SOX (SULFITE OXIDASE); sulfite oxidase  note SULFITE OXIDASE (SOX); FUNCTIONS IN: sulfite oxidase activity; INVOLVED IN: sulfur metabolic process, response to sulfur dioxide, chlorophyll metabolic process; LOCATED IN: mitochondrion, peroxisome; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), Eukaryotic molybdopterin oxidoreductase (InterPro:IPR008335), Moybdenum cofactor oxidoreductase, dimerisation (InterPro:IPR005066), Oxidoreductase, molybdopterin binding (InterPro:IPR000572); BEST Arabidopsis thaliana protein match is: NIA1 (NITRATE REDUCTASE 1); nitrate reductase (TAIR:AT1G77760.1); Has 2122 Blast hits to 2121 proteins in 479 species: Archae - 53; Bacteria - 927; Metazoa - 121; Fungi - 171; Plants - 184; Viruses - 0; Other Eukaryotes - 666 (source: NCBI BLink).  protein_id AT3G01910.3p  transcript_id AT3G01910.3  protein_id AT3G01910.3p  transcript_id AT3G01910.3  
At3g01910	chr3:000317200	0.0	C/317200-317274,316984-317099,316847-316909,316716-316752,316554-316635,316367-316485,316188-316283,315954-316064,315761-315862,315414-315461,315113-315328,314919-315035	AT3G01910.1  CDS  gene_syn AT-SO, AtSO, F28J7.38, F28J7_38, SOX, SULFITE OXIDASE  gene SOX  function Encodes a homodimeric Mo-enzyme with molybdopterin as organic component of the molybdenum cofactor. It lacks the heme domain that other eukaryotic Mo-enzymes possess and has no redox-active centers other than the molybdenum. SO protein has been found in all parts of the plant. The plant SO combines its enzymatic sulfite oxidation with a subsequent nonenzymatic step using its reaction product H2O2 as intermediate for oxidizing another molecule of sulfite.  go_component peroxisome|GO:0005777|17951448|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component peroxisome|GO:0005777|15653809|IDA  go_process sulfur metabolic process|GO:0006790|11598126|IDA  go_process sulfur metabolic process|GO:0006790||ISS  go_process response to sulfur dioxide|GO:0010477|17425719|IMP  go_process chlorophyll metabolic process|GO:0015994|17425719|IMP  go_function sulfite oxidase activity|GO:0008482|11598126|IDA  go_function sulfite oxidase activity|GO:0008482||ISS  product SOX (SULFITE OXIDASE); sulfite oxidase  note SULFITE OXIDASE (SOX); FUNCTIONS IN: sulfite oxidase activity; INVOLVED IN: sulfur metabolic process, response to sulfur dioxide, chlorophyll metabolic process; LOCATED IN: mitochondrion, peroxisome; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), Eukaryotic molybdopterin oxidoreductase (InterPro:IPR008335), Moybdenum cofactor oxidoreductase, dimerisation (InterPro:IPR005066), Oxidoreductase, molybdopterin binding (InterPro:IPR000572); BEST Arabidopsis thaliana protein match is: NIA1 (NITRATE REDUCTASE 1); nitrate reductase (TAIR:AT1G77760.1); Has 2767 Blast hits to 2764 proteins in 588 species: Archae - 63; Bacteria - 1345; Metazoa - 123; Fungi - 180; Plants - 184; Viruses - 0; Other Eukaryotes - 872 (source: NCBI BLink).  protein_id AT3G01910.1p  transcript_id AT3G01910.1  protein_id AT3G01910.1p  transcript_id AT3G01910.1  
At3g01920	chr3:000317449	0.0	W/317449-317756,317838-317891,317992-318016,318113-318235,318342-318508,318599-318668,318750-318848,318924-319001	AT3G01920.1  CDS  gene_syn F28J7.25  go_process biological_process|GO:0008150||ND  product yrdC family protein  note yrdC family protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sua5/YciO/YrdC/YwlC (InterPro:IPR004388), DHBP synthase RibB-like alpha/beta domain (InterPro:IPR017945), Sua5/YciO/YrdC, N-terminal (InterPro:IPR006070); BEST Arabidopsis thaliana protein match is: yrdC protein-related (TAIR:AT5G60590.2); Has 4590 Blast hits to 4590 proteins in 1207 species: Archae - 120; Bacteria - 2917; Metazoa - 115; Fungi - 50; Plants - 35; Viruses - 0; Other Eukaryotes - 1353 (source: NCBI BLink).  protein_id AT3G01920.1p  transcript_id AT3G01920.1  protein_id AT3G01920.1p  transcript_id AT3G01920.1  
At3g01930	chr3:000319831	0.0	C/319831-320777,319289-319757	AT3G01930.1  CDS  gene_syn F28J7.26  product nodulin family protein  note nodulin family protein; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nodulin family protein (TAIR:AT5G14120.1); Has 1392 Blast hits to 1386 proteins in 396 species: Archae - 7; Bacteria - 662; Metazoa - 10; Fungi - 128; Plants - 316; Viruses - 0; Other Eukaryotes - 269 (source: NCBI BLink).  protein_id AT3G01930.1p  transcript_id AT3G01930.1  protein_id AT3G01930.1p  transcript_id AT3G01930.1  
At3g01930	chr3:000321150	0.0	C/321150-321488,319831-320777,319289-319757	AT3G01930.2  CDS  gene_syn F28J7.26  product nodulin family protein  note nodulin family protein; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nodulin family protein (TAIR:AT5G14120.1); Has 1470 Blast hits to 1410 proteins in 397 species: Archae - 7; Bacteria - 664; Metazoa - 12; Fungi - 171; Plants - 320; Viruses - 0; Other Eukaryotes - 296 (source: NCBI BLink).  protein_id AT3G01930.2p  transcript_id AT3G01930.2  protein_id AT3G01930.2p  transcript_id AT3G01930.2  
At3g01940	chr3:000322841	0.0	C/322841-323053	AT3G01940.1  CDS  gene_syn F1C9.28, F1C9_28  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40980.1); Has 168 Blast hits to 167 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 168; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G01940.1p  transcript_id AT3G01940.1  protein_id AT3G01940.1p  transcript_id AT3G01940.1  
At3g01950	chr3:000324026	0.0	W/324026-324238	AT3G01950.1  CDS  gene_syn F1C9.27  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G14110.1); Has 168 Blast hits to 167 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 168; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G01950.1p  transcript_id AT3G01950.1  protein_id AT3G01950.1p  transcript_id AT3G01950.1  
At3g01960	chr3:000324871	0.0	C/324871-325087,324581-324780	AT3G01960.1  CDS  gene_syn F28J7.29, F28J7_29  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 9 growth stages; Has 5 Blast hits to 5 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G01960.1p  transcript_id AT3G01960.1  protein_id AT3G01960.1p  transcript_id AT3G01960.1  
At3g01961	chr3:000325181	0.0	W/325181-325351	AT3G01961.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G01961.1p  transcript_id AT3G01961.1  protein_id AT3G01961.1p  transcript_id AT3G01961.1  
At3g01970	chr3:000326906	0.0	C/326906-327159,326614-326803	AT3G01970.1  CDS  gene_syn AtWRKY45, F1C9.25, F1C9_25, WRKY45  gene WRKY45  function member of WRKY Transcription Factor; Group I  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY45; transcription factor  note WRKY45; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY75; transcription factor (TAIR:AT5G13080.1); Has 2012 Blast hits to 1729 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2000; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT3G01970.1p  transcript_id AT3G01970.1  protein_id AT3G01970.1p  transcript_id AT3G01970.1  
At3g01980	chr3:000328742	0.0	C/328742-328833,328075-328618	AT3G01980.2  CDS  gene_syn F1C9.24, F1C9_24  go_component peroxisome|GO:0005777|17951448|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT2G17845.1); Has 335 Blast hits to 335 proteins in 131 species: Archae - 2; Bacteria - 194; Metazoa - 4; Fungi - 19; Plants - 72; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT3G01980.2p  transcript_id AT3G01980.2  protein_id AT3G01980.2p  transcript_id AT3G01980.2  
At3g01980	chr3:000328742	0.0	C/328742-328833,328099-328618,327747-328025	AT3G01980.3  CDS  gene_syn F1C9.24, F1C9_24  go_component peroxisome|GO:0005777|17951448|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT3G55290.2); Has 28072 Blast hits to 28066 proteins in 1715 species: Archae - 143; Bacteria - 17671; Metazoa - 848; Fungi - 1117; Plants - 688; Viruses - 0; Other Eukaryotes - 7605 (source: NCBI BLink).  protein_id AT3G01980.3p  transcript_id AT3G01980.3  protein_id AT3G01980.3p  transcript_id AT3G01980.3  
At3g01980	chr3:000328742	0.0	C/328742-328833,328419-328618,328099-328328,327747-328025	AT3G01980.1  CDS  gene_syn F1C9.24, F1C9_24  go_component peroxisome|GO:0005777|17951448|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT3G55290.2); Has 33941 Blast hits to 33925 proteins in 1810 species: Archae - 195; Bacteria - 21496; Metazoa - 1047; Fungi - 1369; Plants - 813; Viruses - 0; Other Eukaryotes - 9021 (source: NCBI BLink).  protein_id AT3G01980.1p  transcript_id AT3G01980.1  protein_id AT3G01980.1p  transcript_id AT3G01980.1  
At3g01980	chr3:000328742	0.0	C/328742-328833,328419-328618,328099-328328,327747-328025	AT3G01980.4  CDS  gene_syn F1C9.24, F1C9_24  go_component peroxisome|GO:0005777|17951448|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT3G55290.2); Has 33941 Blast hits to 33925 proteins in 1810 species: Archae - 195; Bacteria - 21496; Metazoa - 1047; Fungi - 1369; Plants - 813; Viruses - 0; Other Eukaryotes - 9021 (source: NCBI BLink).  protein_id AT3G01980.4p  transcript_id AT3G01980.4  protein_id AT3G01980.4p  transcript_id AT3G01980.4  
At3g01990	chr3:000330256	0.0	W/330256-330305,330451-330496,330599-330781,330869-331459,331525-331629,331740-332066	AT3G01990.1  CDS  gene_syn ACR6, F1C9.23, F1C9_23  gene ACR6  function Member of a small family of ACT domain containing proteins in Arabidopsis. ACT domains are involved in amino acid binding.  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function amino acid binding|GO:0016597|12481063|ISS  product ACR6; amino acid binding  note ACR6; FUNCTIONS IN: amino acid binding; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: ACR4 (ACT REPEAT 4); amino acid binding (TAIR:AT1G69040.2); Has 2038 Blast hits to 1265 proteins in 375 species: Archae - 0; Bacteria - 1264; Metazoa - 0; Fungi - 0; Plants - 283; Viruses - 0; Other Eukaryotes - 491 (source: NCBI BLink).  protein_id AT3G01990.1p  transcript_id AT3G01990.1  protein_id AT3G01990.1p  transcript_id AT3G01990.1  
At3g02000	chr3:000332512	0.0	C/332512-332922	AT3G02000.1  CDS  gene_syn F1C9.22, ROXY1  gene ROXY1  function Roxy1 encodes a glutaredoxin belonging to a subgroup specific to higher plants. It is required for proper petal initiation and organogenesis. It is likely to function in the temporal and spatial expression regulation of AGAMOUS in the first and second whorl. It s function is dependent on the Cysteine 49 residue and its nuclear localization. ROXY1 interacts in vitro and in vivo with members of the TGA family of transcription factors (e.g. TGA2, TGA3, TGA7 and PAN).  go_component nucleus|GO:0005634|19218396|IDA  go_component cytoplasm|GO:0005737|19218396|IDA  go_process protein thiol-disulfide exchange|GO:0006467|15728668|ISS  go_process negative regulation of transcription|GO:0016481|18036205|IEP  go_process petal development|GO:0048441|15728668|IMP  go_process stamen morphogenesis|GO:0048448|15728668|IMP  go_process petal formation|GO:0048451|15728668|IMP  go_process sepal formation|GO:0048453|15728668|IDA  go_process stamen formation|GO:0048455|15728668|IDA  go_process anther development|GO:0048653|18036205|IGI  go_function disulfide oxidoreductase activity|GO:0015036|15728668|ISS  product ROXY1; disulfide oxidoreductase  note ROXY1; FUNCTIONS IN: disulfide oxidoreductase activity; INVOLVED IN: in 8 processes; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutaredoxin active site (InterPro:IPR011767), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ROXY2; electron carrier/ protein disulfide oxidoreductase (TAIR:AT5G14070.1); Has 714 Blast hits to 713 proteins in 134 species: Archae - 0; Bacteria - 26; Metazoa - 186; Fungi - 71; Plants - 419; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT3G02000.1p  transcript_id AT3G02000.1  protein_id AT3G02000.1p  transcript_id AT3G02000.1  
At3g02010	chr3:000337965	0.0	W/337965-340442	AT3G02010.1  CDS  gene_syn F1C9.21  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G27610.1); Has 16759 Blast hits to 5016 proteins in 165 species: Archae - 0; Bacteria - 0; Metazoa - 63; Fungi - 61; Plants - 16364; Viruses - 0; Other Eukaryotes - 271 (source: NCBI BLink).  protein_id AT3G02010.1p  transcript_id AT3G02010.1  protein_id AT3G02010.1p  transcript_id AT3G02010.1  
At3g02020	chr3:000343018	0.0	C/343018-343410,342857-342939,342546-342741,342319-342468,342126-342221,341922-342038,341738-341857,341552-341644,341359-341475,341111-341227,340970-341032,340739-340873	AT3G02020.1  CDS  gene_syn AK3, ASPARTATE KINASE 3, F1C9.20, F1C9_20  gene AK3  function encodes a monofunctional aspartate kinase  go_process aspartate family amino acid biosynthetic process|GO:0009067|9207844|TAS  go_function aspartate kinase activity|GO:0004072|11569502|IGI  product AK3 (ASPARTATE KINASE 3); aspartate kinase  note ASPARTATE KINASE 3 (AK3); FUNCTIONS IN: aspartate kinase activity; INVOLVED IN: aspartate family amino acid biosynthetic process; CONTAINS InterPro DOMAIN/s: Aspartate kinase, conserved site (InterPro:IPR018042), Aspartate/glutamate/uridylate kinase (InterPro:IPR001048), Amino acid-binding ACT (InterPro:IPR002912), Aspartate kinase region (InterPro:IPR001341); BEST Arabidopsis thaliana protein match is: CARAB-AK-LYS; amino acid binding / aspartate kinase (TAIR:AT5G14060.2); Has 7154 Blast hits to 7142 proteins in 1348 species: Archae - 170; Bacteria - 3899; Metazoa - 4; Fungi - 101; Plants - 116; Viruses - 0; Other Eukaryotes - 2864 (source: NCBI BLink).  protein_id AT3G02020.1p  transcript_id AT3G02020.1  protein_id AT3G02020.1p  transcript_id AT3G02020.1  
At3g02030	chr3:000345024	0.0	W/345024-345318,345391-345442,345529-345584,345652-345810,345921-346025,346245-346355,346398-346554,346643-346751,346887-347017,347122-347491,347661-347813	AT3G02030.1  CDS  gene_syn F1C9.19, F1C9_19  go_process metabolic process|GO:0008152||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_process metabolic process|GO:0008152||ISS  go_function acyltransferase activity|GO:0008415||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, acyltransferase activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: Diacylglycerol acyltransferase (InterPro:IPR007130), Phospholipid/glycerol acyltransferase (InterPro:IPR002123), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: acyltransferase/ catalytic (TAIR:AT5G41130.1); Has 347 Blast hits to 342 proteins in 103 species: Archae - 0; Bacteria - 211; Metazoa - 27; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT3G02030.1p  transcript_id AT3G02030.1  protein_id AT3G02030.1p  transcript_id AT3G02030.1  
At3g02040	chr3:000349667	0.0	C/349667-349909,348991-349431,348505-348906	AT3G02040.1  CDS  gene_syn F1C9.18, F1C9_18, SRG3, senescence-related gene 3  gene SRG3  go_process glycerol metabolic process|GO:0006071||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function phosphoric diester hydrolase activity|GO:0008081||IEA  go_function glycerophosphodiester phosphodiesterase activity|GO:0008889||IEA  go_process glycerol metabolic process|GO:0006071||ISS  go_function glycerophosphodiester phosphodiesterase activity|GO:0008889||ISS  product SRG3 (senescence-related gene 3); glycerophosphodiester phosphodiesterase/ phosphoric diester hydrolase  note senescence-related gene 3 (SRG3); FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: glycerophosphoryl diester phosphodiesterase family protein (TAIR:AT5G41080.1); Has 1010 Blast hits to 981 proteins in 285 species: Archae - 21; Bacteria - 426; Metazoa - 231; Fungi - 108; Plants - 54; Viruses - 2; Other Eukaryotes - 168 (source: NCBI BLink).  protein_id AT3G02040.1p  transcript_id AT3G02040.1  protein_id AT3G02040.1p  transcript_id AT3G02040.1  
At3g02050	chr3:000350815	0.0	W/350815-350862,351015-351255,351338-351583,351760-351810,351923-352183,352297-352349,352501-352615,352702-352956,353036-354135	AT3G02050.1  CDS  gene_syn ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, ATKT4, ATKUP3, F1C9.17, F1C9_17, K+ UPTAKE TRANSPORTER 3, KUP3, KUP3P  gene KUP3  function potassium transporter KUP3p (KUP3)  go_component membrane|GO:0016020||IEA  go_process potassium ion transport|GO:0006813||ISS  go_process response to external stimulus|GO:0009605|9477571|IEP  go_function potassium ion transmembrane transporter activity|GO:0015079||ISS  product KUP3 (K+ UPTAKE TRANSPORTER 3); potassium ion transmembrane transporter  note K+ UPTAKE TRANSPORTER 3 (KUP3); FUNCTIONS IN: potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport, response to external stimulus; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Potassium uptake protein, kup (InterPro:IPR018519), K+ potassium transporter (InterPro:IPR003855); BEST Arabidopsis thaliana protein match is: TRH1 (TINY ROOT HAIR 1); potassium ion transmembrane transporter (TAIR:AT4G23640.1); Has 2020 Blast hits to 1980 proteins in 579 species: Archae - 13; Bacteria - 1381; Metazoa - 0; Fungi - 57; Plants - 447; Viruses - 4; Other Eukaryotes - 118 (source: NCBI BLink).  protein_id AT3G02050.1p  transcript_id AT3G02050.1  protein_id AT3G02050.1p  transcript_id AT3G02050.1  
At3g02060	chr3:000354409	0.0	W/354409-355010,355111-355336,355404-355649,355828-355962,356056-356180,356265-356404,356587-356657,356784-356945,357056-357142,357216-357389,357516-357560,357771-358127,358218-358319	AT3G02060.1  CDS  gene_syn F1C9.16, F1C9_16  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function transcription factor activity|GO:0003700||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD/DEAH box helicase, putative  note DEAD/DEAH box helicase, putative; FUNCTIONS IN: transcription factor activity, helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Transcription factor CarD (InterPro:IPR003711), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding (TAIR:AT2G01440.1); Has 20531 Blast hits to 20402 proteins in 1616 species: Archae - 162; Bacteria - 10276; Metazoa - 1298; Fungi - 732; Plants - 354; Viruses - 10; Other Eukaryotes - 7699 (source: NCBI BLink).  protein_id AT3G02060.1p  transcript_id AT3G02060.1  protein_id AT3G02060.1p  transcript_id AT3G02060.1  
At3g02060	chr3:000354412	0.0	W/354412-355010,355111-355336,355404-355649,355828-355962,356056-356180,356265-356404,356587-356657,356784-356945,357056-357142,357216-357389,357516-357560,357771-358127,358218-358319	AT3G02060.2  CDS  gene_syn F1C9.16, F1C9_16  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function transcription factor activity|GO:0003700||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD/DEAH box helicase, putative  note DEAD/DEAH box helicase, putative; FUNCTIONS IN: transcription factor activity, helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Transcription factor CarD (InterPro:IPR003711), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding (TAIR:AT2G01440.1); Has 20526 Blast hits to 20397 proteins in 1616 species: Archae - 162; Bacteria - 10276; Metazoa - 1293; Fungi - 732; Plants - 354; Viruses - 10; Other Eukaryotes - 7699 (source: NCBI BLink).  protein_id AT3G02060.2p  transcript_id AT3G02060.2  protein_id AT3G02060.2p  transcript_id AT3G02060.2  
At3g02065	chr3:000359136	0.0	W/359136-359169,359251-360734	AT3G02065.2  CDS  gene_syn F1C9.15  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ATP binding|GO:0005524||ISS  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD/DEAH box helicase family protein  note DEAD/DEAH box helicase family protein; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, HIT-type (InterPro:IPR007529), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase, putative (TAIR:AT2G42520.1); Has 27637 Blast hits to 27044 proteins in 1723 species: Archae - 415; Bacteria - 11105; Metazoa - 5215; Fungi - 3275; Plants - 1400; Viruses - 12; Other Eukaryotes - 6215 (source: NCBI BLink).  protein_id AT3G02065.2p  transcript_id AT3G02065.2  protein_id AT3G02065.2p  transcript_id AT3G02065.2  
At3g02065	chr3:000359136	0.0	W/359136-359169,359251-360734	AT3G02065.3  CDS  gene_syn F1C9.15  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ATP binding|GO:0005524||ISS  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD/DEAH box helicase family protein  note DEAD/DEAH box helicase family protein; FUNCTIONS IN: helicase activity, ATP binding, nucleic acid binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, HIT-type (InterPro:IPR007529), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase, putative (TAIR:AT2G42520.1); Has 27637 Blast hits to 27044 proteins in 1723 species: Archae - 415; Bacteria - 11105; Metazoa - 5215; Fungi - 3275; Plants - 1400; Viruses - 12; Other Eukaryotes - 6215 (source: NCBI BLink).  protein_id AT3G02065.3p  transcript_id AT3G02065.3  protein_id AT3G02065.3p  transcript_id AT3G02065.3  
At3g02065	chr3:000359628	0.0	W/359628-360734	AT3G02065.1  CDS  gene_syn F1C9.15  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ATP binding|GO:0005524||ISS  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD/DEAH box helicase family protein  note DEAD/DEAH box helicase family protein; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase, putative (TAIR:AT2G42520.1); Has 26741 Blast hits to 26383 proteins in 1713 species: Archae - 376; Bacteria - 10888; Metazoa - 4920; Fungi - 3246; Plants - 1374; Viruses - 12; Other Eukaryotes - 5925 (source: NCBI BLink).  protein_id AT3G02065.1p  transcript_id AT3G02065.1  protein_id AT3G02065.1p  transcript_id AT3G02065.1  
At3g02070	chr3:000361368	0.0	W/361368-361511,361596-361669,361853-361907,362016-362090,362275-362348,362449-362497,362745-362829,362946-363002,363086-363132	AT3G02070.1  CDS  gene_syn F1C9.14, F1C9_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function cysteine-type peptidase activity|GO:0008234||ISS  product OTU-like cysteine protease family protein  note OTU-like cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: OTU-like cysteine protease family protein (TAIR:AT3G22260.1); Has 584 Blast hits to 574 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 303; Fungi - 43; Plants - 136; Viruses - 6; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT3G02070.1p  transcript_id AT3G02070.1  protein_id AT3G02070.1p  transcript_id AT3G02070.1  
At3g02080	chr3:000365078	0.0	C/365078-365161,364584-364674,364315-364498,364138-364210	AT3G02080.1  CDS  gene_syn F1C9.13, F1C9_13  go_component cell wall|GO:0005618|16287169|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S19 (RPS19A)  note 40S ribosomal protein S19 (RPS19A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S19e, conserved site (InterPro:IPR018277), Ribosomal protein S19e (InterPro:IPR001266); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S19 (RPS19B) (TAIR:AT5G15520.1); Has 881 Blast hits to 881 proteins in 287 species: Archae - 134; Bacteria - 4; Metazoa - 345; Fungi - 96; Plants - 125; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).  protein_id AT3G02080.1p  transcript_id AT3G02080.1  protein_id AT3G02080.1p  transcript_id AT3G02080.1  
At3g02090	chr3:000365624	0.0	W/365624-366295,366788-366952,367043-367180,367260-367411,367504-367612,367739-367837,368003-368068,368220-368327,368440-368526	AT3G02090.1  CDS  gene_syn F1C9.12, F1C9_12, MPPBETA  gene MPPBETA  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component mitochondrion|GO:0005739|15276431|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process proteolysis|GO:0006508||IEA  go_function catalytic activity|GO:0003824||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function metal ion binding|GO:0046872||IEA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|14730085|IDA  go_component mitochondrial outer membrane|GO:0005741|14730085|IDA  go_component mitochondrial inner membrane|GO:0005743|14730085|IDA  go_component mitochondrial respiratory chain complex III|GO:0005750|18189341|IDA  go_component mitochondrial intermembrane space|GO:0005758|14730085|IDA  go_component mitochondrial matrix|GO:0005759|14730085|IDA  go_process proteolysis|GO:0006508||ISS  go_function metalloendopeptidase activity|GO:0004222||ISS  product mitochondrial processing peptidase beta subunit, putative  note MPPBETA; FUNCTIONS IN: metalloendopeptidase activity, catalytic activity, zinc ion binding, metal ion binding; INVOLVED IN: proteolysis; LOCATED IN: in 11 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M16, zinc-binding site (InterPro:IPR001431), Peptidase M16, C-terminal (InterPro:IPR007863), Peptidase M16, N-terminal (InterPro:IPR011765), Metalloenzyme, LuxS/M16 peptidase-like, metal-binding (InterPro:IPR011249), Peptidase M16, core (InterPro:IPR011237); BEST Arabidopsis thaliana protein match is: mitochondrial processing peptidase alpha subunit, putative (TAIR:AT1G51980.1); Has 8505 Blast hits to 8184 proteins in 1317 species: Archae - 16; Bacteria - 4776; Metazoa - 828; Fungi - 501; Plants - 202; Viruses - 3; Other Eukaryotes - 2179 (source: NCBI BLink).  protein_id AT3G02090.1p  transcript_id AT3G02090.1  protein_id AT3G02090.1p  transcript_id AT3G02090.1  
At3g02090	chr3:000365624	0.0	W/365624-366295,366788-366952,367043-367180,367260-367411,367504-367612,367739-367837,368003-368068,368220-368331,368440-368534	AT3G02090.2  CDS  gene_syn F1C9.12, F1C9_12, MPPBETA  gene MPPBETA  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component mitochondrion|GO:0005739|15276431|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process proteolysis|GO:0006508||IEA  go_function catalytic activity|GO:0003824||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function metal ion binding|GO:0046872||IEA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|14730085|IDA  go_component mitochondrial outer membrane|GO:0005741|14730085|IDA  go_component mitochondrial inner membrane|GO:0005743|14730085|IDA  go_component mitochondrial respiratory chain complex III|GO:0005750|18189341|IDA  go_component mitochondrial intermembrane space|GO:0005758|14730085|IDA  go_component mitochondrial matrix|GO:0005759|14730085|IDA  go_process proteolysis|GO:0006508||ISS  go_function metalloendopeptidase activity|GO:0004222||ISS  product mitochondrial processing peptidase beta subunit, putative  note MPPBETA; FUNCTIONS IN: metalloendopeptidase activity, zinc ion binding, catalytic activity, metal ion binding; INVOLVED IN: proteolysis; LOCATED IN: in 11 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M16, zinc-binding site (InterPro:IPR001431), Peptidase M16, C-terminal (InterPro:IPR007863), Peptidase M16, N-terminal (InterPro:IPR011765), Metalloenzyme, LuxS/M16 peptidase-like, metal-binding (InterPro:IPR011249), Peptidase M16, core (InterPro:IPR011237); BEST Arabidopsis thaliana protein match is: mitochondrial processing peptidase alpha subunit, putative (TAIR:AT1G51980.1); Has 8457 Blast hits to 8139 proteins in 1315 species: Archae - 16; Bacteria - 4766; Metazoa - 826; Fungi - 501; Plants - 201; Viruses - 3; Other Eukaryotes - 2144 (source: NCBI BLink).  protein_id AT3G02090.2p  transcript_id AT3G02090.2  protein_id AT3G02090.2p  transcript_id AT3G02090.2  
At3g02100	chr3:000369962	0.0	C/369962-370484,369386-369809,368840-369287	AT3G02100.1  CDS  gene_syn F1C9.11, F1C9_11  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT1G05680.1); Has 5037 Blast hits to 4983 proteins in 307 species: Archae - 0; Bacteria - 107; Metazoa - 2075; Fungi - 23; Plants - 2734; Viruses - 69; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT3G02100.1p  transcript_id AT3G02100.1  protein_id AT3G02100.1p  transcript_id AT3G02100.1  
At3g02110	chr3:000373373	0.0	C/373373-373637,372414-372617,372153-372328,371780-372079,371510-371640,371325-371420,371129-371234,370902-371045	AT3G02110.1  CDS  gene_syn F1C9.10, F1C9_10, scpl25, serine carboxypeptidase-like 25  gene scpl25  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl25 (serine carboxypeptidase-like 25); serine-type carboxypeptidase  note serine carboxypeptidase-like 25 (scpl25); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: BRS1 (BRI1 SUPPRESSOR 1); serine-type carboxypeptidase (TAIR:AT4G30610.1); Has 2557 Blast hits to 2506 proteins in 281 species: Archae - 0; Bacteria - 137; Metazoa - 569; Fungi - 570; Plants - 957; Viruses - 0; Other Eukaryotes - 324 (source: NCBI BLink).  protein_id AT3G02110.1p  transcript_id AT3G02110.1  protein_id AT3G02110.1p  transcript_id AT3G02110.1  
At3g02120	chr3:000377122	0.0	W/377122-377451,377527-377577	AT3G02120.1  CDS  gene_syn F1C9.2  go_component cellular_component|GO:0005575||ND  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cyclopentenone; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G02120.1p  transcript_id AT3G02120.1  protein_id AT3G02120.1p  transcript_id AT3G02120.1  
At3g02125	chr3:000378205	0.0	W/378205-378983,379094-379382	AT3G02125.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39200.1); Has 3446 Blast hits to 1477 proteins in 169 species: Archae - 4; Bacteria - 106; Metazoa - 2252; Fungi - 209; Plants - 90; Viruses - 39; Other Eukaryotes - 746 (source: NCBI BLink).  protein_id AT3G02125.1p  transcript_id AT3G02125.1  protein_id AT3G02125.1p  transcript_id AT3G02125.1  
At3g02130	chr3:000381224	0.0	W/381224-384181	AT3G02130.1  CDS  gene_syn F1C9.8, F1C9_8, RECEPTOR-LIKE PROTEIN KINASE 2, RPK2, TOAD2, TOADSTOOL 2  gene RPK2  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17419837|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_process lignin metabolic process|GO:0009808|17419837|IMP  go_process anther dehiscence|GO:0009901|17419837|IMP  go_process pollen maturation|GO:0010152|17419837|IMP  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product RPK2 (RECEPTOR-LIKE PROTEIN KINASE 2); ATP binding / kinase/ protein serine/threonine kinase  note RECEPTOR-LIKE PROTEIN KINASE 2 (RPK2); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: lignin metabolic process, transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation, pollen maturation, anther dehiscence; LOCATED IN: plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591); BEST Arabidopsis thaliana protein match is: RPK1 (RECEPTOR-LIKE PROTEIN KINASE 1); kinase/ protein binding / receptor signaling protein serine/threonine kinase (TAIR:AT1G69270.1); Has 145626 Blast hits to 101197 proteins in 3345 species: Archae - 95; Bacteria - 11172; Metazoa - 54149; Fungi - 7549; Plants - 51976; Viruses - 573; Other Eukaryotes - 20112 (source: NCBI BLink).  protein_id AT3G02130.1p  transcript_id AT3G02130.1  protein_id AT3G02130.1p  transcript_id AT3G02130.1  
At3g02140	chr3:000385478	0.0	C/385478-386437	AT3G02140.1  CDS  gene_syn ABI FIVE BINDING PROTEIN 4, AFP4, F1C9.7, TMAC2, TWO OR MORE ABRES-CONTAINING GENE 2  gene TMAC2  function Encodes a protein that acts in the nucleus and is an important negative regulator of ABA and salt stress responses, and could play a critical role in controlling root elongation, floral initiation and starch degradation.  go_component nucleus|GO:0005634|17195036|IDA  go_process response to salt stress|GO:0009651|17195036|IEP  go_process response to abscisic acid stimulus|GO:0009737|17195036|IEP  go_process negative regulation of abscisic acid mediated signaling|GO:0009788|17195036|IMP  go_process regulation of starch biosynthetic process|GO:0010581|17195036|IMP  go_function molecular_function|GO:0003674||ND  product TMAC2 (TWO OR MORE ABRES-CONTAINING GENE 2)  note TWO OR MORE ABRES-CONTAINING GENE 2 (TMAC2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress, negative regulation of abscisic acid mediated signaling, response to abscisic acid stimulus, regulation of starch biosynthetic process; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1675 (InterPro:IPR012463); BEST Arabidopsis thaliana protein match is: AFP3 (ABI FIVE BINDING PROTEIN 3) (TAIR:AT3G29575.4); Has 78 Blast hits to 77 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G02140.1p  transcript_id AT3G02140.1  protein_id AT3G02140.1p  transcript_id AT3G02140.1  
At3g02150	chr3:000391522	0.0	W/391522-392355,392448-392450	AT3G02150.1  CDS  gene_syn F1C9.6, PLASTID TRANSCRIPTION FACTOR 1, PTF1, TCP13, TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 13, TFPD  gene PTF1  function a chloroplast trans-acting factor of the psbD light-responsive promoter.TCP gene involved in heterochronic control of leaf differentiation.  go_component chloroplast|GO:0009507|11161017|IDA  go_process leaf morphogenesis|GO:0009965|18805992|IGI  go_process cell differentiation|GO:0030154|18805992|IGI  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process positive regulation of development, heterochronic|GO:0045962|18805992|IGI  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product PTF1 (PLASTID TRANSCRIPTION FACTOR 1); transcription factor  note PLASTID TRANSCRIPTION FACTOR 1 (PTF1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: cell differentiation, positive regulation of development, heterochronic, leaf morphogenesis, regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP5 (TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 5); transcription factor (TAIR:AT5G60970.1); Has 1173 Blast hits to 1173 proteins in 280 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 0; Plants - 1144; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT3G02150.1p  transcript_id AT3G02150.1  protein_id AT3G02150.1p  transcript_id AT3G02150.1  
At3g02150	chr3:000391522	0.0	W/391522-392589	AT3G02150.2  CDS  gene_syn F1C9.6, PLASTID TRANSCRIPTION FACTOR 1, PTF1, TCP13, TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 13, TFPD  gene PTF1  function a chloroplast trans-acting factor of the psbD light-responsive promoter.TCP gene involved in heterochronic control of leaf differentiation.  go_component chloroplast|GO:0009507|11161017|IDA  go_process leaf morphogenesis|GO:0009965|18805992|IGI  go_process cell differentiation|GO:0030154|18805992|IGI  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process positive regulation of development, heterochronic|GO:0045962|18805992|IGI  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product PTF1 (PLASTID TRANSCRIPTION FACTOR 1); transcription factor  note PLASTID TRANSCRIPTION FACTOR 1 (PTF1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: cell differentiation, positive regulation of development, heterochronic, leaf morphogenesis, regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP5 (TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 5); transcription factor (TAIR:AT5G60970.1); Has 1229 Blast hits to 1229 proteins in 292 species: Archae - 0; Bacteria - 0; Metazoa - 39; Fungi - 6; Plants - 1150; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT3G02150.2p  transcript_id AT3G02150.2  protein_id AT3G02150.2p  transcript_id AT3G02150.2  
At3g02160	chr3:000394615	0.0	W/394615-395808	AT3G02160.1  CDS  gene_syn F1C9.5  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072), Bromodomain transcription factor (InterPro:IPR006565); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G15570.1); Has 126 Blast hits to 126 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 70; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G02160.1p  transcript_id AT3G02160.1  protein_id AT3G02160.1p  transcript_id AT3G02160.1  
At3g02170	chr3:000399237	0.0	C/399237-399393,399053-399105,397317-398957,397074-397224,396208-396923	AT3G02170.1  CDS  gene_syn F1C9.4, LNG2, LONGIFOLIA2  gene LNG2  function Encodes LONGIFOLIA2 (LNG2). Regulates leaf morphology by promoting cell expansion in the leaf-length direction. The LNG2 homologue LNG1 (At5g15580) has similar function.  go_component cellular_component|GO:0005575||ND  go_process monopolar cell growth|GO:0042814|17038516|IMP  go_function molecular_function|GO:0003674||ND  product LNG2 (LONGIFOLIA2)  note LONGIFOLIA2 (LNG2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: monopolar cell growth; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: LNG1 (LONGIFOLIA1) (TAIR:AT5G15580.1); Has 1172 Blast hits to 535 proteins in 94 species: Archae - 0; Bacteria - 11; Metazoa - 418; Fungi - 38; Plants - 92; Viruses - 6; Other Eukaryotes - 607 (source: NCBI BLink).  protein_id AT3G02170.1p  transcript_id AT3G02170.1  protein_id AT3G02170.1p  transcript_id AT3G02170.1  
At3g02180	chr3:000404989	0.0	W/404989-405258,405359-405457	AT3G02180.1  CDS  gene_syn F1C9.3, SP1L3, SPIRAL 1-LIKE3  gene SP1L3  function SPIRAL1-LIKE3 belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SP1L3 (SPIRAL 1-LIKE3)  note SPIRAL 1-LIKE3 (SP1L3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: SP1L4 (SPIRAL1-LIKE4) (TAIR:AT5G15600.1); Has 379 Blast hits to 298 proteins in 55 species: Archae - 2; Bacteria - 8; Metazoa - 65; Fungi - 14; Plants - 107; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink).  protein_id AT3G02180.1p  transcript_id AT3G02180.1  protein_id AT3G02180.1p  transcript_id AT3G02180.1  
At3g02180	chr3:000404989	0.0	W/404989-405258,405359-405457	AT3G02180.2  CDS  gene_syn F1C9.3, SP1L3, SPIRAL 1-LIKE3  gene SP1L3  function SPIRAL1-LIKE3 belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SP1L3 (SPIRAL 1-LIKE3)  note SPIRAL 1-LIKE3 (SP1L3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: SP1L4 (SPIRAL1-LIKE4) (TAIR:AT5G15600.1); Has 379 Blast hits to 298 proteins in 55 species: Archae - 2; Bacteria - 8; Metazoa - 65; Fungi - 14; Plants - 107; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink).  protein_id AT3G02180.2p  transcript_id AT3G02180.2  protein_id AT3G02180.2p  transcript_id AT3G02180.2  
At3g02180	chr3:000404989	0.0	W/404989-405258,405364-405375	AT3G02180.3  CDS  gene_syn F1C9.3, SP1L3, SPIRAL 1-LIKE3  gene SP1L3  function SPIRAL1-LIKE3 belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SP1L3 (SPIRAL 1-LIKE3)  note SPIRAL 1-LIKE3 (SP1L3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: SP1L4 (SPIRAL1-LIKE4) (TAIR:AT5G15600.1); Has 83 Blast hits to 82 proteins in 20 species: Archae - 0; Bacteria - 1; Metazoa - 3; Fungi - 2; Plants - 73; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G02180.3p  transcript_id AT3G02180.3  protein_id AT3G02180.3p  transcript_id AT3G02180.3  
At3g02190	chr3:000406340	0.0	C/406340-406342,406146-406249,406005-406053	AT3G02190.1  CDS  gene_syn F1C9.36  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L39 (RPL39B)  note 60S ribosomal protein L39 (RPL39B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L39e (InterPro:IPR000077); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L39 (RPL39C) (TAIR:AT4G31985.1); Has 607 Blast hits to 607 proteins in 229 species: Archae - 157; Bacteria - 0; Metazoa - 212; Fungi - 79; Plants - 70; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT3G02190.1p  transcript_id AT3G02190.1  protein_id AT3G02190.1p  transcript_id AT3G02190.1  
At3g02200	chr3:000406692	0.0	W/406692-406784,407061-407190,407281-407419,407503-407715,407835-407973,408069-408219,408292-408401,408480-408577,408658-408727,408809-408919	AT3G02200.2  CDS  gene_syn F1C9.1  go_function molecular_function|GO:0003674||ND  product proteasome family protein  note proteasome family protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component region PCI (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: proteasome family protein (TAIR:AT5G15610.2); Has 450 Blast hits to 450 proteins in 138 species: Archae - 0; Bacteria - 2; Metazoa - 207; Fungi - 99; Plants - 78; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT3G02200.2p  transcript_id AT3G02200.2  protein_id AT3G02200.2p  transcript_id AT3G02200.2  
At3g02200	chr3:000406692	0.0	W/406692-406784,407061-407190,407281-407419,407503-407715,407835-407973,408069-408219,408292-408401,408480-408581,408658-408675	AT3G02200.1  CDS  gene_syn F1C9.1  go_function molecular_function|GO:0003674||ND  product proteasome family protein  note proteasome family protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component region PCI (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: proteasome family protein (TAIR:AT5G15610.1); Has 274 Blast hits to 274 proteins in 117 species: Archae - 0; Bacteria - 2; Metazoa - 132; Fungi - 65; Plants - 38; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT3G02200.1p  transcript_id AT3G02200.1  protein_id AT3G02200.1p  transcript_id AT3G02200.1  
At3g02210	chr3:000411385	0.0	C/411385-411478,410883-410962,410341-410797,410090-410246,409728-410008,409352-409641	AT3G02210.1  CDS  gene_syn COBL1, COBRA-LIKE PROTEIN 1 PRECURSOR, F14P3.14, F14P3_14  gene COBL1  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12376623|TAS  go_component anchored to membrane|GO:0031225|12805589|TAS  go_process biological_process|GO:0008150||ND  product COBL1 (COBRA-LIKE PROTEIN 1 PRECURSOR)  note COBRA-LIKE PROTEIN 1 PRECURSOR (COBL1); INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918), COBRA-like (InterPro:IPR017391); BEST Arabidopsis thaliana protein match is: COBL2 (COBRA-LIKE PROTEIN 2 PRECURSOR) (TAIR:AT3G29810.1); Has 244 Blast hits to 240 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 244; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G02210.1p  transcript_id AT3G02210.1  protein_id AT3G02210.1p  transcript_id AT3G02210.1  
At3g02220	chr3:000413456	0.0	C/413456-413536,413244-413365,413070-413122,412882-412945,412721-412763,412578-412625,412210-412482	AT3G02220.1  CDS  gene_syn F14P3.13, F14P3_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 159 Blast hits to 159 proteins in 72 species: Archae - 1; Bacteria - 2; Metazoa - 93; Fungi - 4; Plants - 25; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT3G02220.1p  transcript_id AT3G02220.1  protein_id AT3G02220.1p  transcript_id AT3G02220.1  
At3g02230	chr3:000415463	0.0	W/415463-415804,416403-416653,416739-416907,416993-417304	AT3G02230.1  CDS  gene_syn ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, ATRGP1, F14P3.12, F14P3_12, REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, RGP1  gene RGP1  function reversibly glycosylated polypeptide possibly involved in plant cell wall synthesis  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component Golgi trans cisterna|GO:0000138|9207152|IDA  go_component Golgi stack|GO:0005795|9536051|IDA  go_process plant-type cell wall biogenesis|GO:0009832|9207152|TAS  go_process plant-type cell wall biogenesis|GO:0009832||NAS  go_function cellulose synthase (UDP-forming) activity|GO:0016760|9207152|ISS  product RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1); cellulose synthase (UDP-forming)  note REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1 (RGP1); FUNCTIONS IN: cellulose synthase (UDP-forming) activity; INVOLVED IN: response to salt stress, plant-type cell wall biogenesis; LOCATED IN: cytosolic ribosome, Golgi stack, cell wall, plasma membrane, Golgi trans cisterna; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Alpha-1,4-glucan-protein synthase, UDP-forming (InterPro:IPR004901); BEST Arabidopsis thaliana protein match is: RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2); transferase, transferring hexosyl groups (TAIR:AT5G15650.1); Has 146 Blast hits to 143 proteins in 32 species: Archae - 14; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 123; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G02230.1p  transcript_id AT3G02230.1  protein_id AT3G02230.1p  transcript_id AT3G02230.1  
At3g02240	chr3:000418542	0.0	W/418542-418629,418722-418795,418932-419078	AT3G02240.1  CDS  gene_syn F14P3.11, F14P3_11  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root, stamen; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02242.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G02240.1p  transcript_id AT3G02240.1  protein_id AT3G02240.1p  transcript_id AT3G02240.1  
At3g02242	chr3:000420108	0.0	W/420108-420189,420292-420365,420501-420680	AT3G02242.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02240.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G02242.1p  transcript_id AT3G02242.1  protein_id AT3G02242.1p  transcript_id AT3G02242.1  
At3g02250	chr3:000426073	0.0	C/426073-426376,425913-425980,425717-425805,425456-425621,425053-425342,424760-424964,424519-424676,424185-424443	AT3G02250.1  CDS  gene_syn F14P3.10, F14P3_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G15740.1); Has 425 Blast hits to 420 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 425; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G02250.1p  transcript_id AT3G02250.1  protein_id AT3G02250.1p  transcript_id AT3G02250.1  
At3g02260	chr3:000448168	0.0	C/448168-448489,447894-448000,447288-447453,441160-447200,440388-441005,440122-440299,439701-439947,435120-439637,434822-435044,434171-434569,433909-434052,432741-433766,432149-432652,431152-431955	AT3G02260.1  CDS  gene_syn ASA1, ATTENUATED SHADE AVOIDANCE 1, BIG, CORYMBOSA1, CRM1, DARK OVER-EXPRESSION OF CAB 1, DOC1, F14P3.3, F14P3_3, LOW PHOSPHATE-RESISTANT ROOT 1, LPR1, TIR3, TRANSPORT INHIBITOR RESPONSE 3, UMB1, UMBRELLA 1  gene BIG  function Calossin-like protein required for polar auxin transport  go_component membrane|GO:0016020|17432890|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process photomorphogenesis|GO:0009640|8314087|IMP  go_process response to auxin stimulus|GO:0009733|11485992|IMP  go_process auxin polar transport|GO:0009926|11485992|IDA  go_process indeterminate inflorescence morphogenesis|GO:0048283||IMP  go_process root development|GO:0048364|15681664|IMP  product BIG (BIG); binding / ubiquitin-protein ligase/ zinc ion binding  note BIG (BIG); FUNCTIONS IN: ubiquitin-protein ligase activity, binding, zinc ion binding; INVOLVED IN: response to auxin stimulus, indeterminate inflorescence morphogenesis, root development, photomorphogenesis, auxin polar transport; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, N-recognin, metazoa (InterPro:IPR013993), WD40 repeat-like (InterPro:IPR011046), Armadillo-type fold (InterPro:IPR016024), Zinc finger, ZZ-type (InterPro:IPR000433), Zinc finger, N-recognin (InterPro:IPR003126); BEST Arabidopsis thaliana protein match is: HAC12 (histone acetyltransferase of the CBP family 12); H3/H4 histone acetyltransferase/ histone acetyltransferase/ transcription cofactor (TAIR:AT1G16710.1); Has 937 Blast hits to 793 proteins in 91 species: Archae - 0; Bacteria - 4; Metazoa - 671; Fungi - 37; Plants - 99; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink).  protein_id AT3G02260.1p  transcript_id AT3G02260.1  protein_id AT3G02260.1p  transcript_id AT3G02260.1  
At3g02270	chr3:000448977	0.0	C/448977-451007	AT3G02270.1  CDS  gene_syn F14P3.8, F14P3_8  go_function binding|GO:0005488||IEA  go_function transferase activity|GO:0016740||IEA  go_process regulation of translational initiation|GO:0006446||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein  note eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein; FUNCTIONS IN: binding, transferase activity, translation initiation factor activity; INVOLVED IN: regulation of translational initiation; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), eIF4-gamma/eIF5/eIF2-epsilon (InterPro:IPR003307), Bacterial transferase hexapeptide repeat (InterPro:IPR001451), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein (TAIR:AT2G34970.1); Has 2427 Blast hits to 2395 proteins in 500 species: Archae - 185; Bacteria - 645; Metazoa - 440; Fungi - 168; Plants - 148; Viruses - 3; Other Eukaryotes - 838 (source: NCBI BLink).  protein_id AT3G02270.1p  transcript_id AT3G02270.1  protein_id AT3G02270.1p  transcript_id AT3G02270.1  
At3g02280	chr3:000453646	0.0	W/453646-453786,454015-454095,454201-454305,454827-454918,455212-455396,455674-455753,455990-456064,456157-456267,456349-456480,456613-456732,456822-457038,457127-457659	AT3G02280.1  CDS  gene_syn F14P3.7, F14P3_7  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function FMN binding|GO:0010181||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function oxidoreductase activity|GO:0016491||ISS  product flavodoxin family protein  note flavodoxin family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FMN binding, iron ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Flavodoxin-like (InterPro:IPR001094), Flavodoxin/nitric oxide synthase (InterPro:IPR008254), Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), FAD-binding, type 1 (InterPro:IPR003097), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709); BEST Arabidopsis thaliana protein match is: ATR1 (ARABIDOPSIS P450 REDUCTASE 1); NADPH-hemoprotein reductase (TAIR:AT4G24520.1); Has 4772 Blast hits to 4456 proteins in 984 species: Archae - 7; Bacteria - 2251; Metazoa - 898; Fungi - 571; Plants - 341; Viruses - 0; Other Eukaryotes - 704 (source: NCBI BLink).  protein_id AT3G02280.1p  transcript_id AT3G02280.1  protein_id AT3G02280.1p  transcript_id AT3G02280.1  
At3g02290	chr3:000459385	0.0	W/459385-459504,459662-460100,460171-460280,460662-460688	AT3G02290.1  CDS  gene_syn F14P3.6, F14P3_6  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G15790.2); Has 4111 Blast hits to 4103 proteins in 198 species: Archae - 0; Bacteria - 2; Metazoa - 1589; Fungi - 258; Plants - 1425; Viruses - 17; Other Eukaryotes - 820 (source: NCBI BLink).  protein_id AT3G02290.1p  transcript_id AT3G02290.1  protein_id AT3G02290.1p  transcript_id AT3G02290.1  
At3g02290	chr3:000459385	0.0	W/459385-459504,459662-460228	AT3G02290.2  CDS  gene_syn F14P3.6, F14P3_6  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G15790.2); Has 51 Blast hits to 51 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G02290.2p  transcript_id AT3G02290.2  protein_id AT3G02290.2p  transcript_id AT3G02290.2  
At3g02300	chr3:000461551	0.0	W/461551-461806,462049-462242,462322-462369,462444-462516,462615-462786,463032-463463,463578-463769,463881-463929	AT3G02300.1  CDS  gene_syn F14P3.5, F14P3_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function Ran GTPase binding|GO:0008536||ISS  product regulator of chromosome condensation (RCC1) family protein  note regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: Ran GTPase binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: UVR8 (UVB-RESISTANCE 8); chromatin binding / guanyl-nucleotide exchange factor (TAIR:AT5G63860.1); Has 15923 Blast hits to 4611 proteins in 294 species: Archae - 70; Bacteria - 1730; Metazoa - 5947; Fungi - 802; Plants - 1364; Viruses - 0; Other Eukaryotes - 6010 (source: NCBI BLink).  protein_id AT3G02300.1p  transcript_id AT3G02300.1  protein_id AT3G02300.1p  transcript_id AT3G02300.1  
At3g02310	chr3:000466503	0.0	C/466503-466687,465822-465903,465619-465680,465415-465514,465206-465289,464884-465029,464554-464647	AT3G02310.1  CDS  gene_syn AGL4, F14P3.4, F14P3_4, SEP2, SEPALLATA 2, TRANSCRIPTION FACTOR  gene SEP2  function MADS-box protein, binds K domain of AG in vivo  go_component nucleus|GO:0005634||IEA  go_process flower development|GO:0009908||NAS  go_process ovule development|GO:0048481|14555696|IMP  go_function DNA binding|GO:0003677|1672119|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700|1672119|ISS  go_function protein binding|GO:0005515|9418042|IPI  product SEP2 (SEPALLATA 2); DNA binding / protein binding / transcription factor  note SEPALLATA 2 (SEP2); FUNCTIONS IN: protein binding, transcription factor activity, DNA binding; INVOLVED IN: flower development, ovule development; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: SEP1 (SEPALLATA1); DNA binding / transcription factor (TAIR:AT5G15800.1); Has 5412 Blast hits to 5409 proteins in 696 species: Archae - 3; Bacteria - 0; Metazoa - 554; Fungi - 206; Plants - 4595; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT3G02310.1p  transcript_id AT3G02310.1  protein_id AT3G02310.1p  transcript_id AT3G02310.1  
At3g02315	chr3:000469660	0.0	W/469660-469733	AT3G02315.1  tRNA  gene_syn 60222.TRNA-ILE-1, 60739.TRNA-ILE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ile (anticodon: AAT)  transcript_id AT3G02315.1  
At3g02320	chr3:000470097	0.0	W/470097-470192,470697-470978,471071-471158,471288-471409,471499-471638,471724-471796,471890-471978,472091-472196,472445-472657,472749-472943,473032-473109,473205-473492	AT3G02320.1  CDS  gene_syn F11A12.1, F11A12_1  go_process tRNA processing|GO:0008033||IEA  go_function RNA binding|GO:0003723||IEA  go_function tRNA (guanine-N2-)-methyltransferase activity|GO:0004809||IEA  go_component cellular_component|GO:0005575||ND  go_process tRNA processing|GO:0008033||ISS  go_function RNA binding|GO:0003723||ISS  go_function tRNA (guanine-N2-)-methyltransferase activity|GO:0004809||ISS  product RNA binding / tRNA (guanine-N2-)-methyltransferase  note RNA binding / tRNA (guanine-N2-)-methyltransferase; FUNCTIONS IN: RNA binding, tRNA (guanine-N2-)-methyltransferase activity; INVOLVED IN: tRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: N2,N2-dimethylguanosine tRNA methyltransferase (InterPro:IPR002905); BEST Arabidopsis thaliana protein match is: N2,N2-dimethylguanosine tRNA methyltransferase family protein (TAIR:AT5G15810.1); Has 751 Blast hits to 711 proteins in 254 species: Archae - 149; Bacteria - 57; Metazoa - 179; Fungi - 100; Plants - 52; Viruses - 0; Other Eukaryotes - 214 (source: NCBI BLink).  protein_id AT3G02320.1p  transcript_id AT3G02320.1  protein_id AT3G02320.1p  transcript_id AT3G02320.1  
At3g02330	chr3:000476551	0.0	C/476551-476592,473881-476424	AT3G02330.1  CDS  gene_syn F11A12.2, F11A12_2  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G39530.1); Has 20237 Blast hits to 5229 proteins in 181 species: Archae - 2; Bacteria - 9; Metazoa - 141; Fungi - 89; Plants - 19505; Viruses - 0; Other Eukaryotes - 491 (source: NCBI BLink).  protein_id AT3G02330.1p  transcript_id AT3G02330.1  protein_id AT3G02330.1p  transcript_id AT3G02330.1  
At3g02335	chr3:000476802	0.0	W/476802-476873	AT3G02335.1  tRNA  gene_syn 60739.TRNA-ASP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asp (anticodon: GTC)  transcript_id AT3G02335.1  
At3g02340	chr3:000477032	0.0	W/477032-478261	AT3G02340.1  CDS  gene_syn F11A12.3, F11A12_3  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G15820.1); Has 6187 Blast hits to 6169 proteins in 212 species: Archae - 2; Bacteria - 2; Metazoa - 2261; Fungi - 446; Plants - 2470; Viruses - 30; Other Eukaryotes - 976 (source: NCBI BLink).  protein_id AT3G02340.1p  transcript_id AT3G02340.1  protein_id AT3G02340.1p  transcript_id AT3G02340.1  
At3g02350	chr3:000479248	0.0	W/479248-479418,479555-480793,480903-481178	AT3G02350.1  CDS  gene_syn F11A12.4, F11A12_4, GAUT9, Galacturonosyltransferase 9  gene GAUT9  function Encodes a protein with putative galacturonosyltransferase activity.  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS  product GAUT9 (Galacturonosyltransferase 9); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note Galacturonosyltransferase 9 (GAUT9); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: Golgi apparatus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: QUA1 (QUASIMODO 1); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT3G25140.1); Has 742 Blast hits to 741 proteins in 109 species: Archae - 0; Bacteria - 169; Metazoa - 122; Fungi - 5; Plants - 430; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT3G02350.1p  transcript_id AT3G02350.1  protein_id AT3G02350.1p  transcript_id AT3G02350.1  
At3g02360	chr3:000482498	0.0	W/482498-483958	AT3G02360.1  CDS  gene_syn F11A12.5, F11A12_5  go_component peroxisome|GO:0005777|17951448|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function catalytic activity|GO:0003824||IEA  go_function phosphogluconate dehydrogenase (decarboxylating) activity|GO:0004616||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_function coenzyme binding|GO:0050662||IEA  go_function phosphogluconate dehydrogenase (decarboxylating) activity|GO:0004616||ISS  product 6-phosphogluconate dehydrogenase family protein  note 6-phosphogluconate dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: response to salt stress; LOCATED IN: peroxisome; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), 6-phosphogluconate dehydrogenase, decarboxylating (InterPro:IPR006113), 6-phosphogluconate dehydrogenase, C-terminal (InterPro:IPR006114), 6-phosphogluconate dehydrogenase (InterPro:IPR006183), NAD(P)-binding (InterPro:IPR016040), Fibritin/6-phosphogluconate dehydrogenase, C-terminal extension (InterPro:IPR012284); BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase family protein (TAIR:AT5G41670.2); Has 8125 Blast hits to 8086 proteins in 1474 species: Archae - 54; Bacteria - 4368; Metazoa - 506; Fungi - 152; Plants - 199; Viruses - 2; Other Eukaryotes - 2844 (source: NCBI BLink).  protein_id AT3G02360.1p  transcript_id AT3G02360.1  protein_id AT3G02360.1p  transcript_id AT3G02360.1  
At3g02360	chr3:000482498	0.0	W/482498-483958	AT3G02360.2  CDS  gene_syn F11A12.5, F11A12_5  go_component peroxisome|GO:0005777|17951448|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function catalytic activity|GO:0003824||IEA  go_function phosphogluconate dehydrogenase (decarboxylating) activity|GO:0004616||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_function coenzyme binding|GO:0050662||IEA  go_function phosphogluconate dehydrogenase (decarboxylating) activity|GO:0004616||ISS  product 6-phosphogluconate dehydrogenase family protein  note 6-phosphogluconate dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: response to salt stress; LOCATED IN: peroxisome; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), 6-phosphogluconate dehydrogenase, decarboxylating (InterPro:IPR006113), 6-phosphogluconate dehydrogenase, C-terminal (InterPro:IPR006114), 6-phosphogluconate dehydrogenase (InterPro:IPR006183), NAD(P)-binding (InterPro:IPR016040), Fibritin/6-phosphogluconate dehydrogenase, C-terminal extension (InterPro:IPR012284); BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase family protein (TAIR:AT5G41670.2); Has 8125 Blast hits to 8086 proteins in 1474 species: Archae - 54; Bacteria - 4368; Metazoa - 506; Fungi - 152; Plants - 199; Viruses - 2; Other Eukaryotes - 2844 (source: NCBI BLink).  protein_id AT3G02360.2p  transcript_id AT3G02360.2  protein_id AT3G02360.2p  transcript_id AT3G02360.2  
At3g02370	chr3:000484745	0.0	W/484745-484836,484945-485338	AT3G02370.1  CDS  gene_syn F11A12.6, F11A12_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57360.1); Has 64 Blast hits to 64 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G02370.1p  transcript_id AT3G02370.1  protein_id AT3G02370.1p  transcript_id AT3G02370.1  
At3g02380	chr3:000487941	0.0	C/487941-488624,487438-487797	AT3G02380.1  CDS  gene_syn COL2, F11A12.7, F11A12_7, constans-like 2  gene COL2  function homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins  go_component intracellular|GO:0005622||IEA  go_process regulation of flower development|GO:0009909|11359606|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11359606|ISS  go_function zinc ion binding|GO:0008270||ISS  product COL2 (constans-like 2); transcription factor/ zinc ion binding  note constans-like 2 (COL2); FUNCTIONS IN: transcription factor activity, zinc ion binding; INVOLVED IN: regulation of flower development; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: CO (CONSTANS); transcription factor/ transcription regulator/ zinc ion binding (TAIR:AT5G15840.1); Has 1852 Blast hits to 1422 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1706; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).  protein_id AT3G02380.1p  transcript_id AT3G02380.1  protein_id AT3G02380.1p  transcript_id AT3G02380.1  
At3g02390	chr3:000488838	0.0	W/488838-488909,489173-489274	AT3G02390.1  CDS  gene_syn F11A12.8, F11A12_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G02390.1p  transcript_id AT3G02390.1  protein_id AT3G02390.1p  transcript_id AT3G02390.1  
At3g02400	chr3:000489830	0.0	W/489830-491587	AT3G02400.1  CDS  gene_syn F16B3.3, F16B3_3  go_function DNA binding|GO:0003677||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product forkhead-associated domain-containing protein / FHA domain-containing protein / AT hook motif-containing protein  note forkhead-associated domain-containing protein / FHA domain-containing protein / AT hook motif-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: AT hook, DNA-binding, conserved site (InterPro:IPR017956), SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: forkhead-associated domain-containing protein / FHA domain-containing protein (TAIR:AT4G14490.1); Has 32431 Blast hits to 19920 proteins in 972 species: Archae - 138; Bacteria - 2157; Metazoa - 15646; Fungi - 2544; Plants - 1038; Viruses - 223; Other Eukaryotes - 10685 (source: NCBI BLink).  protein_id AT3G02400.1p  transcript_id AT3G02400.1  protein_id AT3G02400.1p  transcript_id AT3G02400.1  
At3g02410	chr3:000494615	0.0	C/494615-494675,494302-494373,494151-494220,493997-494077,493792-493866,493541-493642,493323-493460,493155-493220,492551-492694,492360-492450,492118-492279	AT3G02410.2  CDS  gene_syn F16B3.4, F16B3_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Carboxylesterase, type B (InterPro:IPR002018); BEST Arabidopsis thaliana protein match is: ATPCME (PRENYLCYSTEINE METHYLESTERASE); prenylcysteine methylesterase (TAIR:AT5G15860.1); Has 6626 Blast hits to 6602 proteins in 841 species: Archae - 25; Bacteria - 2529; Metazoa - 2527; Fungi - 403; Plants - 105; Viruses - 5; Other Eukaryotes - 1032 (source: NCBI BLink).  protein_id AT3G02410.2p  transcript_id AT3G02410.2  protein_id AT3G02410.2p  transcript_id AT3G02410.2  
At3g02410	chr3:000494615	0.0	C/494615-494877,494302-494378,494151-494220,493997-494077,493792-493866,493541-493642,493323-493460,493155-493220,492551-492694,492360-492450,492118-492279	AT3G02410.1  CDS  gene_syn F16B3.4, F16B3_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Carboxylesterase, type B (InterPro:IPR002018); BEST Arabidopsis thaliana protein match is: ATPCME (PRENYLCYSTEINE METHYLESTERASE); prenylcysteine methylesterase (TAIR:AT5G15860.1); Has 6563 Blast hits to 6539 proteins in 837 species: Archae - 25; Bacteria - 2499; Metazoa - 2507; Fungi - 392; Plants - 105; Viruses - 5; Other Eukaryotes - 1030 (source: NCBI BLink).  protein_id AT3G02410.1p  transcript_id AT3G02410.1  protein_id AT3G02410.1p  transcript_id AT3G02410.1  
At3g02420	chr3:000498596	0.0	C/498596-498772,498104-498233,497918-498018,497492-497617,497278-497398,497109-497193,496886-496999,496714-496753,496179-496331	AT3G02420.1  CDS  gene_syn F16B3.5, F16B3_5  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 46 Blast hits to 45 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 35; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT3G02420.1p  transcript_id AT3G02420.1  protein_id AT3G02420.1p  transcript_id AT3G02420.1  
At3g02430	chr3:000499360	0.0	W/499360-500019	AT3G02430.1  CDS  gene_syn F16B3.6, F16B3_6  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF679 (InterPro:IPR007770); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24310.1); Has 153 Blast hits to 146 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G02430.1p  transcript_id AT3G02430.1  protein_id AT3G02430.1p  transcript_id AT3G02430.1  
At3g02440	chr3:000501579	0.0	C/501579-502229,501016-501466,500804-500823	AT3G02440.1  CDS  gene_syn F16B3.7, F16B3_7  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G15900.1); Has 785 Blast hits to 740 proteins in 37 species: Archae - 0; Bacteria - 4; Metazoa - 73; Fungi - 6; Plants - 669; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT3G02440.1p  transcript_id AT3G02440.1  protein_id AT3G02440.1p  transcript_id AT3G02440.1  
At3g02450	chr3:000503987	0.0	C/503987-505030,503585-503908,503217-503517,502876-503075	AT3G02450.1  CDS  gene_syn F16B3.8, F16B3_8  go_component chloroplast|GO:0009507||IEA  go_component integral to membrane|GO:0016021||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_function ATP binding|GO:0005524||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATPase activity|GO:0016887||ISS  product cell division protein ftsH, putative  note cell division protein ftsH, putative; FUNCTIONS IN: in 6 functions; LOCATED IN: integral to membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH6 (FTSH PROTEASE 6); ATP-dependent peptidase/ ATPase/ metallopeptidase/ peptidase/ zinc ion binding (TAIR:AT5G15250.1); Has 29914 Blast hits to 28201 proteins in 1898 species: Archae - 923; Bacteria - 10733; Metazoa - 4167; Fungi - 2480; Plants - 1767; Viruses - 20; Other Eukaryotes - 9824 (source: NCBI BLink).  protein_id AT3G02450.1p  transcript_id AT3G02450.1  protein_id AT3G02450.1p  transcript_id AT3G02450.1  
At3g02460	chr3:000506110	0.0	W/506110-506261,506343-506538,506617-506787,506871-506987,507270-507467,507557-507616,507690-507788,508024-508092	AT3G02460.1  CDS  gene_syn F16B3.9, F16B3_9  go_component intracellular|GO:0005622||IEA  go_process regulation of Rab GTPase activity|GO:0032313||IEA  go_function RAB GTPase activator activity|GO:0005097||IEA  product plant adhesion molecule, putative  note plant adhesion molecule, putative; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: PAM1 (plant adhesion molecule 1); RAB GTPase activator (TAIR:AT5G15930.1); Has 4072 Blast hits to 4066 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 2318; Fungi - 725; Plants - 269; Viruses - 0; Other Eukaryotes - 760 (source: NCBI BLink).  protein_id AT3G02460.1p  transcript_id AT3G02460.1  protein_id AT3G02460.1p  transcript_id AT3G02460.1  
At3g02460	chr3:000506110	0.0	W/506110-506261,506343-506538,506617-506787,506871-506987,507270-507467,507690-507788,508024-508092	AT3G02460.2  CDS  gene_syn F16B3.9, F16B3_9  go_component intracellular|GO:0005622||IEA  go_process regulation of Rab GTPase activity|GO:0032313||IEA  go_function RAB GTPase activator activity|GO:0005097||IEA  product plant adhesion molecule, putative  note plant adhesion molecule, putative; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: PAM1 (plant adhesion molecule 1); RAB GTPase activator (TAIR:AT5G15930.1); Has 3700 Blast hits to 3695 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 2125; Fungi - 638; Plants - 266; Viruses - 0; Other Eukaryotes - 671 (source: NCBI BLink).  protein_id AT3G02460.2p  transcript_id AT3G02460.2  protein_id AT3G02460.2p  transcript_id AT3G02460.2  
At3g02468	chr3:000509815	0.0	W/509815-509952,510048-510068	AT3G02468.1  CDS  gene_syn CPuORF9, Conserved peptide upstream open reading frame 9  gene CPuORF9  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF9 represents a conserved upstream opening reading frame relative to major ORF AT3G02470.1  product CPuORF9 (Conserved peptide upstream open reading frame 9)  note Conserved peptide upstream open reading frame 9 (CPuORF9); CONTAINS InterPro DOMAIN/s: S-adenosyl-l-methionine decarboxylase leader peptide (InterPro:IPR012511); BEST Arabidopsis thaliana protein match is: CPuORF10 (Conserved peptide upstream open reading frame 10) (TAIR:AT5G15948.1); Has 25 Blast hits to 25 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G02468.1p  transcript_id AT3G02468.1  protein_id AT3G02468.1p  transcript_id AT3G02468.1  
At3g02470	chr3:000510223	0.0	W/510223-511323	AT3G02470.1  CDS  gene_syn ADOMETDC, F16B3.10, F16B3_10, S-ADENOSYLMETHIONINE DECARBOXYLASE, SAMDC  gene SAMDC  function Encodes a S-adenosylmethionine decarboxylase involved in polyamine biosynthesis.  go_component cellular_component|GO:0005575||ND  go_process polyamine biosynthetic process|GO:0006596|12914918|TAS  go_function adenosylmethionine decarboxylase activity|GO:0004014|10578049|IDA  go_function adenosylmethionine decarboxylase activity|GO:0004014||ISS  product SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE); adenosylmethionine decarboxylase  note S-ADENOSYLMETHIONINE DECARBOXYLASE (SAMDC); FUNCTIONS IN: adenosylmethionine decarboxylase activity; INVOLVED IN: polyamine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine decarboxylase, core (InterPro:IPR016067), S-adenosylmethionine decarboxylase (InterPro:IPR001985), S-adenosylmethionine decarboxylase, conserved site (InterPro:IPR018166), S-adenosylmethionine decarboxylase subgroup (InterPro:IPR018167); BEST Arabidopsis thaliana protein match is: adenosylmethionine decarboxylase family protein (TAIR:AT5G15950.2); Has 825 Blast hits to 812 proteins in 205 species: Archae - 0; Bacteria - 50; Metazoa - 172; Fungi - 102; Plants - 446; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT3G02470.1p  transcript_id AT3G02470.1  protein_id AT3G02470.1p  transcript_id AT3G02470.1  
At3g02470	chr3:000510223	0.0	W/510223-511323	AT3G02470.3  CDS  gene_syn ADOMETDC, F16B3.10, F16B3_10, S-ADENOSYLMETHIONINE DECARBOXYLASE, SAMDC  gene SAMDC  function Encodes a S-adenosylmethionine decarboxylase involved in polyamine biosynthesis.  go_component cellular_component|GO:0005575||ND  go_process polyamine biosynthetic process|GO:0006596|12914918|TAS  go_function adenosylmethionine decarboxylase activity|GO:0004014|10578049|IDA  go_function adenosylmethionine decarboxylase activity|GO:0004014||ISS  product SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE); adenosylmethionine decarboxylase  note S-ADENOSYLMETHIONINE DECARBOXYLASE (SAMDC); FUNCTIONS IN: adenosylmethionine decarboxylase activity; INVOLVED IN: polyamine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine decarboxylase, core (InterPro:IPR016067), S-adenosylmethionine decarboxylase (InterPro:IPR001985), S-adenosylmethionine decarboxylase, conserved site (InterPro:IPR018166), S-adenosylmethionine decarboxylase subgroup (InterPro:IPR018167); BEST Arabidopsis thaliana protein match is: adenosylmethionine decarboxylase family protein (TAIR:AT5G15950.2); Has 825 Blast hits to 812 proteins in 205 species: Archae - 0; Bacteria - 50; Metazoa - 172; Fungi - 102; Plants - 446; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT3G02470.3p  transcript_id AT3G02470.3  protein_id AT3G02470.3p  transcript_id AT3G02470.3  
At3g02470	chr3:000510223	0.0	W/510223-511323	AT3G02470.4  CDS  gene_syn ADOMETDC, F16B3.10, F16B3_10, S-ADENOSYLMETHIONINE DECARBOXYLASE, SAMDC  gene SAMDC  function Encodes a S-adenosylmethionine decarboxylase involved in polyamine biosynthesis.  go_component cellular_component|GO:0005575||ND  go_process polyamine biosynthetic process|GO:0006596|12914918|TAS  go_function adenosylmethionine decarboxylase activity|GO:0004014|10578049|IDA  go_function adenosylmethionine decarboxylase activity|GO:0004014||ISS  product SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE); adenosylmethionine decarboxylase  note S-ADENOSYLMETHIONINE DECARBOXYLASE (SAMDC); FUNCTIONS IN: adenosylmethionine decarboxylase activity; INVOLVED IN: polyamine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine decarboxylase, core (InterPro:IPR016067), S-adenosylmethionine decarboxylase (InterPro:IPR001985), S-adenosylmethionine decarboxylase, conserved site (InterPro:IPR018166), S-adenosylmethionine decarboxylase subgroup (InterPro:IPR018167); BEST Arabidopsis thaliana protein match is: adenosylmethionine decarboxylase family protein (TAIR:AT5G15950.2).  protein_id AT3G02470.4p  transcript_id AT3G02470.4  protein_id AT3G02470.4p  transcript_id AT3G02470.4  
At3g02480	chr3:000512384	0.0	W/512384-512440,512623-512691,512777-512857	AT3G02480.1  CDS  gene_syn F16B3.11, F16B3_11  go_component cellular_component|GO:0005575||ND  go_process response to water deprivation|GO:0009414|18552355|IEP  go_function molecular_function|GO:0003674||ND  product ABA-responsive protein-related  note ABA-responsive protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to water deprivation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38760.1); Has 144 Blast hits to 124 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 8; Plants - 127; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G02480.1p  transcript_id AT3G02480.1  protein_id AT3G02480.1p  transcript_id AT3G02480.1  
At3g02490	chr3:000513607	0.0	W/513607-515604	AT3G02490.1  CDS  gene_syn F16B3.12, F16B3_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G15980.1); Has 3120 Blast hits to 1713 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 4; Plants - 3094; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT3G02490.1p  transcript_id AT3G02490.1  protein_id AT3G02490.1p  transcript_id AT3G02490.1  
At3g02493	chr3:000516047	0.0	C/516047-516184	AT3G02493.1  CDS  gene_syn DEVIL 2, DVL2, ROTUNDIFOLIA LIKE 19, RTFL19  gene RTFL19  go_process shoot development|GO:0048367|14871303|IMP  product RTFL19 (ROTUNDIFOLIA LIKE 19)  note ROTUNDIFOLIA LIKE 19 (RTFL19); INVOLVED IN: shoot development; EXPRESSED IN: stem, root, leaf; CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); BEST Arabidopsis thaliana protein match is: RTFL18 (ROTUNDIFOLIA LIKE 18) (TAIR:AT5G16023.1); Has 32 Blast hits to 32 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G02493.1p  transcript_id AT3G02493.1  protein_id AT3G02493.1p  transcript_id AT3G02493.1  
At3g02500	chr3:000519364	0.0	W/519364-519556,519624-519668,520047-520349,520435-520592,521446-521628	AT3G02500.1  CDS  gene_syn F16B3.13, F16B3_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16030.1); Has 10 Blast hits to 10 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G02500.1p  transcript_id AT3G02500.1  protein_id AT3G02500.1p  transcript_id AT3G02500.1  
At3g02510	chr3:000524508	0.0	C/524508-524536,524265-524409,523740-523850,523579-523639,523386-523501,523227-523312,522923-523124,522760-522813,522524-522652	AT3G02510.2  CDS  gene_syn F16B3.14, F16B3_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function chromatin binding|GO:0003682||ISS  go_function Ran GTPase binding|GO:0008536||ISS  product regulator of chromosome condensation (RCC1) family protein  note regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: chromatin binding, Ran GTPase binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: regulator of chromosome condensation (RCC1) family protein (TAIR:AT5G16040.1); Has 16071 Blast hits to 4684 proteins in 319 species: Archae - 79; Bacteria - 1918; Metazoa - 6295; Fungi - 850; Plants - 1439; Viruses - 2; Other Eukaryotes - 5488 (source: NCBI BLink).  protein_id AT3G02510.2p  transcript_id AT3G02510.2  protein_id AT3G02510.2p  transcript_id AT3G02510.2  
At3g02510	chr3:000524508	0.0	C/524508-524536,524265-524409,523740-523850,523579-523639,523386-523501,523227-523312,522923-523124,522760-522813,522539-522652,522372-522428,522086-522292	AT3G02510.1  CDS  gene_syn F16B3.14, F16B3_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function chromatin binding|GO:0003682||ISS  go_function Ran GTPase binding|GO:0008536||ISS  product regulator of chromosome condensation (RCC1) family protein  note regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: chromatin binding, Ran GTPase binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: regulator of chromosome condensation (RCC1) family protein (TAIR:AT5G16040.1); Has 17747 Blast hits to 4845 proteins in 322 species: Archae - 75; Bacteria - 1947; Metazoa - 6773; Fungi - 1046; Plants - 1472; Viruses - 4; Other Eukaryotes - 6430 (source: NCBI BLink).  protein_id AT3G02510.1p  transcript_id AT3G02510.1  protein_id AT3G02510.1p  transcript_id AT3G02510.1  
At3g02515	chr3:000525370	0.0	W/525370-526255	AT3G02515.1  mRNA_TE_gene  pseudo  gene_syn SADHU NON-CODING RETROTRANSPOSON, SADHU6-1  gene SADHU6-1  function Member of Sadhu non-coding retrotransposon family  note Transposable element gene  
At3g02520	chr3:000527439	0.0	C/527439-527915,527212-527334,526994-527110,526800-526880	AT3G02520.1  CDS  gene_syn 14-3-3NU, F16B3.15, F16B3_15, GENERAL REGULATORY FACTOR 7, GF14 NU, GRF7  gene GRF7  function Encodes GF14 & 957;, a 14-3-3 protein isoform (14-3-3& 957;).  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component nuclear envelope|GO:0005635||IDA  go_component cytoplasm|GO:0005737||IDA  go_component plasma membrane|GO:0005886||IDA  go_component chloroplast stroma|GO:0009570|9276953|IDA  go_function protein binding|GO:0005515||NAS  go_function protein phosphorylated amino acid binding|GO:0045309|10631267|TAS  product GRF7 (GENERAL REGULATORY FACTOR 7); protein binding / protein phosphorylated amino acid binding  note GENERAL REGULATORY FACTOR 7 (GRF7); FUNCTIONS IN: protein phosphorylated amino acid binding, protein binding; LOCATED IN: nuclear envelope, chloroplast stroma, plasma membrane, chloroplast, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: GRF5 (GENERAL REGULATORY FACTOR 5); ATP binding / protein binding / protein phosphorylated amino acid binding (TAIR:AT5G16050.1); Has 2090 Blast hits to 2082 proteins in 292 species: Archae - 0; Bacteria - 0; Metazoa - 1026; Fungi - 218; Plants - 540; Viruses - 0; Other Eukaryotes - 306 (source: NCBI BLink).  protein_id AT3G02520.1p  transcript_id AT3G02520.1  protein_id AT3G02520.1p  transcript_id AT3G02520.1  
At3g02530	chr3:000532324	0.0	C/532324-532457,532161-532224,531661-531796,531292-531443,531153-531200,530934-531026,530665-530771,530438-530552,530247-530333,529769-529973,529560-529654,529388-529456,529196-529303,528982-529100,528806-528881	AT3G02530.1  CDS  gene_syn F16B3.16, F16B3_16  go_component membrane|GO:0016020|17432890|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cytoplasm|GO:0005737|15610358|IDA  product chaperonin, putative  note chaperonin, putative; FUNCTIONS IN: unfolded protein binding, protein binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, zeta subunit (InterPro:IPR012722), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: chaperonin, putative (TAIR:AT5G16070.1); Has 13554 Blast hits to 13062 proteins in 2289 species: Archae - 391; Bacteria - 5634; Metazoa - 1855; Fungi - 975; Plants - 487; Viruses - 0; Other Eukaryotes - 4212 (source: NCBI BLink).  protein_id AT3G02530.1p  transcript_id AT3G02530.1  protein_id AT3G02530.1p  transcript_id AT3G02530.1  
At3g02540	chr3:000536086	0.0	C/536086-536151,535305-535466,535149-535199,534919-534986,534645-534800,534384-534561,534072-534218,533906-533977	AT3G02540.2  CDS  gene_syn F16B3.17, F16B3_17, PUTATIVE DNA REPAIR PROTEIN RAD23-3, RAD23-3  gene RAD23-3  go_process protein modification process|GO:0006464||IEA  product RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)  note PUTATIVE DNA REPAIR PROTEIN RAD23-3 (RAD23-3); INVOLVED IN: protein modification process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin (InterPro:IPR000626), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: DNA repair protein RAD23, putative (TAIR:AT5G38470.2); Has 36416 Blast hits to 19955 proteins in 1351 species: Archae - 153; Bacteria - 8104; Metazoa - 9155; Fungi - 4032; Plants - 5778; Viruses - 1465; Other Eukaryotes - 7729 (source: NCBI BLink).  protein_id AT3G02540.2p  transcript_id AT3G02540.2  protein_id AT3G02540.2p  transcript_id AT3G02540.2  
At3g02540	chr3:000536086	0.0	C/536086-536151,535305-535466,535149-535199,534919-534986,534645-534800,534384-534561,534072-534218,533912-533977,533772-533819,533566-533678,533338-533425,533095-533211	AT3G02540.1  CDS  gene_syn F16B3.17, F16B3_17, PUTATIVE DNA REPAIR PROTEIN RAD23-3, RAD23-3  gene RAD23-3  go_component nucleus|GO:0005634||IEA  go_process nucleotide-excision repair|GO:0006289||IEA  go_process protein modification process|GO:0006464||IEA  go_process proteasomal ubiquitin-dependent protein catabolic process|GO:0043161||IEA  go_function damaged DNA binding|GO:0003684||IEA  product RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3); damaged DNA binding  note PUTATIVE DNA REPAIR PROTEIN RAD23-3 (RAD23-3); FUNCTIONS IN: damaged DNA binding; INVOLVED IN: protein modification process, proteasomal ubiquitin-dependent protein catabolic process, nucleotide-excision repair; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), UV excision repair protein Rad23 (InterPro:IPR004806), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin (InterPro:IPR000626), UV excision repair protein Rad23, C-terminal (InterPro:IPR014761), XPC-binding domain (InterPro:IPR015360), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: DNA repair protein RAD23, putative (TAIR:AT5G38470.1); Has 36702 Blast hits to 20290 proteins in 1352 species: Archae - 153; Bacteria - 8192; Metazoa - 9251; Fungi - 4074; Plants - 5824; Viruses - 1459; Other Eukaryotes - 7749 (source: NCBI BLink).  protein_id AT3G02540.1p  transcript_id AT3G02540.1  protein_id AT3G02540.1p  transcript_id AT3G02540.1  
At3g02550	chr3:000537461	0.0	C/537461-537650,536747-537348	AT3G02550.1  CDS  gene_syn F16B3.18, F16B3_18, LBD41, LOB DOMAIN-CONTAINING PROTEIN 41  gene LBD41  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41)  note LOB DOMAIN-CONTAINING PROTEIN 41 (LBD41); INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883), Asymmetric leaves, AS2/LOB (InterPro:IPR017414); BEST Arabidopsis thaliana protein match is: LBD40 (LOB DOMAIN-CONTAINING PROTEIN 40) (TAIR:AT1G67100.1); Has 351 Blast hits to 351 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 351; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G02550.1p  transcript_id AT3G02550.1  protein_id AT3G02550.1p  transcript_id AT3G02550.1  
At3g02555	chr3:000540804	0.0	C/540804-540955,540636-540705,540024-540290	AT3G02555.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16110.1); Has 62 Blast hits to 62 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G02555.1p  transcript_id AT3G02555.1  protein_id AT3G02555.1p  transcript_id AT3G02555.1  
At3g02560	chr3:000542341	0.0	W/542341-542415,542501-542574,542656-542962,543049-543168	AT3G02560.1  CDS  gene_syn F16B3.19, F16B3_19  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S7 (RPS7B)  note 40S ribosomal protein S7 (RPS7B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S7e (InterPro:IPR000554); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S7 (RPS7C) (TAIR:AT5G16130.1); Has 555 Blast hits to 555 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 251; Fungi - 93; Plants - 111; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).  protein_id AT3G02560.1p  transcript_id AT3G02560.1  protein_id AT3G02560.1p  transcript_id AT3G02560.1  
At3g02560	chr3:000542341	0.0	W/542341-542415,542501-542574,542656-542962,543049-543168	AT3G02560.2  CDS  gene_syn F16B3.19, F16B3_19  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S7 (RPS7B)  note 40S ribosomal protein S7 (RPS7B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S7e (InterPro:IPR000554); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S7 (RPS7C) (TAIR:AT5G16130.1); Has 555 Blast hits to 555 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 251; Fungi - 93; Plants - 111; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).  protein_id AT3G02560.2p  transcript_id AT3G02560.2  protein_id AT3G02560.2p  transcript_id AT3G02560.2  
At3g02570	chr3:000545140	0.0	C/545140-545478,544848-545015,544217-544426,543858-544124,543463-543777	AT3G02570.1  CDS  gene_syn F16B3.20, F16B3_20, MATERNAL EFFECT EMBRYO ARREST 31, MEE31, PHOSPHOMANNOSE ISOMERASE 1, PMI1  gene MEE31  function Encodes a protein with phosphomannose isomerase activity.  go_component cellular_component|GO:0005575||ND  go_process carbohydrate metabolic process|GO:0005975||ISS  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function mannose-6-phosphate isomerase activity|GO:0004476|18755683|IDA  go_function mannose-6-phosphate isomerase activity|GO:0004476||ISS  product MEE31 (MATERNAL EFFECT EMBRYO ARREST 31); mannose-6-phosphate isomerase  note MATERNAL EFFECT EMBRYO ARREST 31 (MEE31); FUNCTIONS IN: mannose-6-phosphate isomerase activity; INVOLVED IN: embryonic development ending in seed dormancy, carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-6-phosphate isomerase (InterPro:IPR016305), Cupin, RmlC-type (InterPro:IPR011051), Mannose-6-phosphate isomerase, type I (InterPro:IPR001250), RmlC-like jelly roll fold (InterPro:IPR014710), Phosphomannose isomerase, type I, conserved site (InterPro:IPR018050); BEST Arabidopsis thaliana protein match is: DIN9 (DARK INDUCIBLE 9); mannose-6-phosphate isomerase (TAIR:AT1G67070.1); Has 1328 Blast hits to 1321 proteins in 480 species: Archae - 0; Bacteria - 617; Metazoa - 231; Fungi - 147; Plants - 58; Viruses - 0; Other Eukaryotes - 275 (source: NCBI BLink).  protein_id AT3G02570.1p  transcript_id AT3G02570.1  protein_id AT3G02570.1p  transcript_id AT3G02570.1  
At3g02580	chr3:000547048	0.0	W/547048-547273,547642-547947,548302-548615	AT3G02580.1  CDS  gene_syn BOULE 1, BUL1, DELTA7 STEROL C-5 DESATURASE, DWARF 7, DWF7, F16B3.21, F16B3_21, STE1, STEROL 1  gene STE1  function Brassinosteroid biosynthetic enzyme, catalyzes delta7 sterol C-5 desaturation step. Mutant has dwarf phenotype.  go_component endoplasmic reticulum|GO:0005783||IEA  go_process unidimensional cell growth|GO:0009826|11346939|TAS  go_process sterol biosynthetic process|GO:0016126|9927639|IMP  go_process brassinosteroid biosynthetic process|GO:0016132|9927639|IMP  go_function C-5 sterol desaturase activity|GO:0000248|10344195|IGI  go_function C-5 sterol desaturase activity|GO:0000248|8919915|IGI  go_function C-5 sterol desaturase activity|GO:0000248|9927639|IMP  product STE1 (STEROL 1); C-5 sterol desaturase  note STEROL 1 (STE1); FUNCTIONS IN: C-5 sterol desaturase activity; INVOLVED IN: sterol biosynthetic process, unidimensional cell growth, brassinosteroid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: delta 7-sterol-C5-desaturase, putative (TAIR:AT3G02590.1); Has 1850 Blast hits to 1849 proteins in 351 species: Archae - 0; Bacteria - 436; Metazoa - 315; Fungi - 322; Plants - 183; Viruses - 0; Other Eukaryotes - 594 (source: NCBI BLink).  protein_id AT3G02580.1p  transcript_id AT3G02580.1  protein_id AT3G02580.1p  transcript_id AT3G02580.1  
At3g02590	chr3:000549340	0.0	W/549340-549568,549857-550162,550249-550553	AT3G02590.1  CDS  gene_syn F16B3.22, F16B3_22  go_component endoplasmic reticulum|GO:0005783||IEA  go_process fatty acid biosynthetic process|GO:0006633||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process sterol biosynthetic process|GO:0016126||ISS  go_function C-5 sterol desaturase activity|GO:0000248||ISS  product delta 7-sterol-C5-desaturase, putative  note delta 7-sterol-C5-desaturase, putative; FUNCTIONS IN: oxidoreductase activity, C-5 sterol desaturase activity, iron ion binding; INVOLVED IN: oxidation reduction, sterol biosynthetic process, fatty acid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: STE1 (STEROL 1); C-5 sterol desaturase (TAIR:AT3G02580.1); Has 1888 Blast hits to 1885 proteins in 323 species: Archae - 0; Bacteria - 403; Metazoa - 324; Fungi - 341; Plants - 224; Viruses - 0; Other Eukaryotes - 596 (source: NCBI BLink).  protein_id AT3G02590.1p  transcript_id AT3G02590.1  protein_id AT3G02590.1p  transcript_id AT3G02590.1  
At3g02600	chr3:000551534	0.0	W/551534-551584,552437-552529,552931-553152,553245-553332,553433-553542,553620-553710,553793-553981,554068-554127,554221-554411	AT3G02600.1  CDS  gene_syn ATLPP3, F16B3.23, F16B3_23, LIPID PHOSPHATE PHOSPHATASE 3, LPP3  gene LPP3  function Encodes phosphatidic acid phosphatase. Expressed during germination.  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component integral to plasma membrane|GO:0005887|11278556|ISS  go_process phospholipid metabolic process|GO:0006644|11278556|ISS  go_function phosphatidate phosphatase activity|GO:0008195|11278556|ISS  go_function phosphatidate phosphatase activity|GO:0008195||ISS  product LPP3 (LIPID PHOSPHATE PHOSPHATASE 3); phosphatidate phosphatase  note LIPID PHOSPHATE PHOSPHATASE 3 (LPP3); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1); phosphatidate phosphatase (TAIR:AT2G01180.1); Has 1518 Blast hits to 1516 proteins in 239 species: Archae - 8; Bacteria - 183; Metazoa - 803; Fungi - 256; Plants - 117; Viruses - 2; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT3G02600.1p  transcript_id AT3G02600.1  protein_id AT3G02600.1p  transcript_id AT3G02600.1  
At3g02600	chr3:000551534	0.0	W/551534-551584,552931-553152,553245-553332,553433-553542,553620-553710,553793-553981,554068-554127,554221-554411	AT3G02600.2  CDS  gene_syn ATLPP3, F16B3.23, F16B3_23, LIPID PHOSPHATE PHOSPHATASE 3, LPP3  gene LPP3  function Encodes phosphatidic acid phosphatase. Expressed during germination.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component integral to plasma membrane|GO:0005887|11278556|ISS  go_process phospholipid metabolic process|GO:0006644|11278556|ISS  go_function phosphatidate phosphatase activity|GO:0008195|11278556|ISS  go_function phosphatidate phosphatase activity|GO:0008195||ISS  product LPP3 (LIPID PHOSPHATE PHOSPHATASE 3); phosphatidate phosphatase  note LIPID PHOSPHATE PHOSPHATASE 3 (LPP3); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1); phosphatidate phosphatase (TAIR:AT2G01180.1); Has 1518 Blast hits to 1516 proteins in 239 species: Archae - 8; Bacteria - 183; Metazoa - 803; Fungi - 256; Plants - 117; Viruses - 2; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT3G02600.2p  transcript_id AT3G02600.2  protein_id AT3G02600.2p  transcript_id AT3G02600.2  
At3g02600	chr3:000552937	0.0	W/552937-553152,553245-553332,553433-553542,553620-553710,553793-553981,554068-554127,554221-554411	AT3G02600.3  CDS  gene_syn ATLPP3, F16B3.23, F16B3_23, LIPID PHOSPHATE PHOSPHATASE 3, LPP3  gene LPP3  function Encodes phosphatidic acid phosphatase. Expressed during germination.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component integral to plasma membrane|GO:0005887|11278556|ISS  go_process phospholipid metabolic process|GO:0006644|11278556|ISS  go_function phosphatidate phosphatase activity|GO:0008195|11278556|ISS  go_function phosphatidate phosphatase activity|GO:0008195||ISS  product LPP3 (LIPID PHOSPHATE PHOSPHATASE 3); phosphatidate phosphatase  note LIPID PHOSPHATE PHOSPHATASE 3 (LPP3); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: LPP2 (LIPID PHOSPHATE PHOSPHATASE 2); acid phosphatase/ phosphatidate phosphatase (TAIR:AT1G15080.1); Has 1518 Blast hits to 1516 proteins in 239 species: Archae - 8; Bacteria - 183; Metazoa - 803; Fungi - 256; Plants - 117; Viruses - 2; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT3G02600.3p  transcript_id AT3G02600.3  protein_id AT3G02600.3p  transcript_id AT3G02600.3  
At3g02600	chr3:000552937	0.0	W/552937-553152,553245-553332,553433-553542,553620-553710,553793-553981,554068-554127,554221-554411	AT3G02600.4  CDS  gene_syn ATLPP3, F16B3.23, F16B3_23, LIPID PHOSPHATE PHOSPHATASE 3, LPP3  gene LPP3  function Encodes phosphatidic acid phosphatase. Expressed during germination.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component integral to plasma membrane|GO:0005887|11278556|ISS  go_process phospholipid metabolic process|GO:0006644|11278556|ISS  go_function phosphatidate phosphatase activity|GO:0008195|11278556|ISS  go_function phosphatidate phosphatase activity|GO:0008195||ISS  product LPP3 (LIPID PHOSPHATE PHOSPHATASE 3); phosphatidate phosphatase  note LIPID PHOSPHATE PHOSPHATASE 3 (LPP3); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: LPP2 (LIPID PHOSPHATE PHOSPHATASE 2); acid phosphatase/ phosphatidate phosphatase (TAIR:AT1G15080.1); Has 1518 Blast hits to 1516 proteins in 239 species: Archae - 8; Bacteria - 183; Metazoa - 803; Fungi - 256; Plants - 117; Viruses - 2; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT3G02600.4p  transcript_id AT3G02600.4  protein_id AT3G02600.4p  transcript_id AT3G02600.4  
At3g02600	chr3:000552937	0.0	W/552937-553152,553245-553332,553433-553542,553620-553710,553793-553981,554068-554127,554221-554411	AT3G02600.5  CDS  gene_syn ATLPP3, F16B3.23, F16B3_23, LIPID PHOSPHATE PHOSPHATASE 3, LPP3  gene LPP3  function Encodes phosphatidic acid phosphatase. Expressed during germination.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component integral to plasma membrane|GO:0005887|11278556|ISS  go_process phospholipid metabolic process|GO:0006644|11278556|ISS  go_function phosphatidate phosphatase activity|GO:0008195|11278556|ISS  go_function phosphatidate phosphatase activity|GO:0008195||ISS  product LPP3 (LIPID PHOSPHATE PHOSPHATASE 3); phosphatidate phosphatase  note LIPID PHOSPHATE PHOSPHATASE 3 (LPP3); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: LPP2 (LIPID PHOSPHATE PHOSPHATASE 2); acid phosphatase/ phosphatidate phosphatase (TAIR:AT1G15080.1); Has 1518 Blast hits to 1516 proteins in 239 species: Archae - 8; Bacteria - 183; Metazoa - 803; Fungi - 256; Plants - 117; Viruses - 2; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT3G02600.5p  transcript_id AT3G02600.5  protein_id AT3G02600.5p  transcript_id AT3G02600.5  
At3g02610	chr3:000555665	0.0	W/555665-555816,556277-556790,556883-557458	AT3G02610.1  CDS  gene_syn F16B3.24, F16B3_24  go_component chloroplast|GO:0009507||IEA  go_process fatty acid metabolic process|GO:0006631||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function acyl-[acyl-carrier-protein] desaturase activity|GO:0045300||IEA  go_function transition metal ion binding|GO:0046914||IEA  go_process fatty acid biosynthetic process|GO:0006633||ISS  go_function acyl-[acyl-carrier-protein] desaturase activity|GO:0045300||ISS  product acyl-[acyl-carrier-protein] desaturase/ oxidoreductase/ transition metal ion binding  note acyl-[acyl-carrier-protein] desaturase/ oxidoreductase/ transition metal ion binding; FUNCTIONS IN: acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding; INVOLVED IN: fatty acid metabolic process, fatty acid biosynthetic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Ribonucleotide reductase-related (InterPro:IPR012348), Fatty acid desaturase, type 2 (InterPro:IPR005067), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078); BEST Arabidopsis thaliana protein match is: acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative (TAIR:AT3G02620.1); Has 579 Blast hits to 575 proteins in 126 species: Archae - 0; Bacteria - 209; Metazoa - 2; Fungi - 0; Plants - 313; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT3G02610.1p  transcript_id AT3G02610.1  protein_id AT3G02610.1p  transcript_id AT3G02610.1  
At3g02620	chr3:000560256	0.0	W/560256-560380,560580-561069,561185-561760	AT3G02620.1  CDS  gene_syn F16B3.25, F16B3_25  go_process fatty acid metabolic process|GO:0006631||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function acyl-[acyl-carrier-protein] desaturase activity|GO:0045300||IEA  go_function transition metal ion binding|GO:0046914||IEA  go_process fatty acid biosynthetic process|GO:0006633||ISS  go_function acyl-[acyl-carrier-protein] desaturase activity|GO:0045300||ISS  product acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative  note acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative; FUNCTIONS IN: acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding; INVOLVED IN: fatty acid metabolic process, fatty acid biosynthetic process; CONTAINS InterPro DOMAIN/s: Ribonucleotide reductase-related (InterPro:IPR012348), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078), Fatty acid desaturase, type 2 (InterPro:IPR005067); BEST Arabidopsis thaliana protein match is: acyl-[acyl-carrier-protein] desaturase/ oxidoreductase/ transition metal ion binding (TAIR:AT3G02610.1); Has 576 Blast hits to 573 proteins in 126 species: Archae - 0; Bacteria - 209; Metazoa - 2; Fungi - 0; Plants - 312; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT3G02620.1p  transcript_id AT3G02620.1  protein_id AT3G02620.1p  transcript_id AT3G02620.1  
At3g02630	chr3:000562164	0.0	W/562164-562285,562875-563379,563788-564228,564402-564524	AT3G02630.1  CDS  gene_syn F16B3.26, F16B3_26  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_process fatty acid metabolic process|GO:0006631||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function acyl-[acyl-carrier-protein] desaturase activity|GO:0045300||IEA  go_function transition metal ion binding|GO:0046914||IEA  go_process fatty acid biosynthetic process|GO:0006633||ISS  go_function acyl-[acyl-carrier-protein] desaturase activity|GO:0045300||ISS  product acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative  note acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative; FUNCTIONS IN: acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding; INVOLVED IN: fatty acid metabolic process, fatty acid biosynthetic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonucleotide reductase-related (InterPro:IPR012348), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078), Fatty acid desaturase, type 2 (InterPro:IPR005067); BEST Arabidopsis thaliana protein match is: acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative (TAIR:AT5G16240.1); Has 567 Blast hits to 564 proteins in 126 species: Archae - 0; Bacteria - 200; Metazoa - 2; Fungi - 0; Plants - 312; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT3G02630.1p  transcript_id AT3G02630.1  protein_id AT3G02630.1p  transcript_id AT3G02630.1  
At3g02640	chr3:000565064	0.0	C/565064-565621	AT3G02640.1  CDS  gene_syn F16B3.27, F16B3_27  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16250.1); Has 58 Blast hits to 58 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G02640.1p  transcript_id AT3G02640.1  protein_id AT3G02640.1p  transcript_id AT3G02640.1  
At3g02650	chr3:000566271	0.0	W/566271-567796,568158-569865	AT3G02650.1  CDS  gene_syn F16B3.28, F16B3_28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62680.1); Has 15827 Blast hits to 5604 proteins in 171 species: Archae - 5; Bacteria - 18; Metazoa - 429; Fungi - 297; Plants - 14509; Viruses - 0; Other Eukaryotes - 569 (source: NCBI BLink).  protein_id AT3G02650.1p  transcript_id AT3G02650.1  protein_id AT3G02650.1p  transcript_id AT3G02650.1  
At3g02660	chr3:000570221	0.0	C/570221-571756	AT3G02660.1  CDS  gene_syn EMBRYO DEFECTIVE 2768, F16B3.29, F16B3_29, emb2768  gene emb2768  go_component chloroplast|GO:0009507|18431481|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function RNA binding|GO:0003723||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function tyrosine-tRNA ligase activity|GO:0004831||IEA  go_function ATP binding|GO:0005524||IEA  go_component mitochondrion|GO:0005739|16251277|IDA  go_component chloroplast|GO:0009507|16251277|IDA  go_process tRNA aminoacylation for protein translation|GO:0006418||ISS  go_process embryonic development ending in seed dormancy|GO:0009793|16297076|IMP  go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS  go_function ATP binding|GO:0005524||ISS  product emb2768 (EMBRYO DEFECTIVE 2768); ATP binding / RNA binding / aminoacyl-tRNA ligase/ nucleotide binding / tyrosine-tRNA ligase  note EMBRYO DEFECTIVE 2768 (emb2768); FUNCTIONS IN: RNA binding, tyrosine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (InterPro:IPR002307), RNA-binding S4 (InterPro:IPR002942), Aminoacyl-tRNA synthetase, class Ib (InterPro:IPR002305); Has 6358 Blast hits to 6354 proteins in 1524 species: Archae - 11; Bacteria - 2982; Metazoa - 99; Fungi - 101; Plants - 19; Viruses - 0; Other Eukaryotes - 3146 (source: NCBI BLink).  protein_id AT3G02660.1p  transcript_id AT3G02660.1  protein_id AT3G02660.1p  transcript_id AT3G02660.1  
At3g02670	chr3:000573949	0.0	C/573949-574602	AT3G02670.1  CDS  gene_syn F16B3.30, F16B3_30  go_component endomembrane system|GO:0012505||IEA  go_function molecular_function|GO:0003674||ND  product proline-rich family protein  note proline-rich family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: embryo; EXPRESSED DURING: C globular stage; Has 47278 Blast hits to 14093 proteins in 678 species: Archae - 9; Bacteria - 2654; Metazoa - 36824; Fungi - 1907; Plants - 2240; Viruses - 683; Other Eukaryotes - 2961 (source: NCBI BLink).  protein_id AT3G02670.1p  transcript_id AT3G02670.1  protein_id AT3G02670.1p  transcript_id AT3G02670.1  
At3g02680	chr3:000576378	0.0	W/576378-576414,576739-576792,576864-577134,577206-577297,577378-577508,577577-577623,577704-577812,577957-578043,578115-578286,578362-578777,578848-578909,578995-579091,579173-579226	AT3G02680.1  CDS  gene_syn ATNBS1, F16B3.31, F16B3_31, NBS1, NIJMEGEN BREAKAGE SYNDROME 1  gene NBS1  function DNA repair and meiotic recombination protein, component of MRE11 complex with RAD50 and MRE11  go_process synapsis|GO:0007129|17672843|IGI  go_process reciprocal meiotic recombination|GO:0007131|17672843|IGI  go_function molecular_function|GO:0003674||ND  product NBS1 (NIJMEGEN BREAKAGE SYNDROME 1)  note NIJMEGEN BREAKAGE SYNDROME 1 (NBS1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: synapsis, reciprocal meiotic recombination; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (InterPro:IPR000253); Has 131 Blast hits to 129 proteins in 48 species: Archae - 0; Bacteria - 2; Metazoa - 102; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G02680.1p  transcript_id AT3G02680.1  protein_id AT3G02680.1p  transcript_id AT3G02680.1  
At3g02690	chr3:000579627	0.0	W/579627-580223,580312-580359,580449-580571,580655-580804,580935-581106,581192-581252,581346-581448	AT3G02690.1  CDS  gene_syn F16B3.32, F16B3_32  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020||ISS  product integral membrane family protein  note integral membrane family protein; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); Has 12510 Blast hits to 12469 proteins in 1077 species: Archae - 184; Bacteria - 7412; Metazoa - 20; Fungi - 2; Plants - 102; Viruses - 0; Other Eukaryotes - 4790 (source: NCBI BLink).  protein_id AT3G02690.1p  transcript_id AT3G02690.1  protein_id AT3G02690.1p  transcript_id AT3G02690.1  
At3g02700	chr3:000582720	0.0	C/582720-582813,581727-582391	AT3G02700.1  CDS  gene_syn F16B3.33, F16B3_33  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NC domain-containing protein  note NC domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NC (InterPro:IPR007053); BEST Arabidopsis thaliana protein match is: NC domain-containing protein (TAIR:AT5G16330.1); Has 105 Blast hits to 104 proteins in 28 species: Archae - 0; Bacteria - 23; Metazoa - 12; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G02700.1p  transcript_id AT3G02700.1  protein_id AT3G02700.1p  transcript_id AT3G02700.1  
At3g02710	chr3:000583184	0.0	W/583184-584260,584439-584523,584626-584722,584872-584935,585026-585082,585252-585289,585382-585463,585691-585780	AT3G02710.1  CDS  gene_syn F16B3.34, F16B3_34  function Encodes a protein with a putative role in mRNA splicing.  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process RNA splicing|GO:0008380|15575968|ISS  product nuclear associated protein-related / NAP-related  note nuclear associated protein-related / NAP-related; FUNCTIONS IN: binding; INVOLVED IN: RNA splicing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1716, eukaryotic (InterPro:IPR013180), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); Has 270 Blast hits to 266 proteins in 119 species: Archae - 0; Bacteria - 2; Metazoa - 133; Fungi - 62; Plants - 26; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT3G02710.1p  transcript_id AT3G02710.1  protein_id AT3G02710.1p  transcript_id AT3G02710.1  
At3g02715	chr3:000586086	0.0	W/586086-586167	AT3G02715.1  tRNA  gene_syn 60277.TRNA-SER-1, 60284.TRNA-SER-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT3G02715.1  
At3g02720	chr3:000586336	0.0	W/586336-586392,586502-586618,586803-587243,587423-587785,587900-588088	AT3G02720.1  CDS  gene_syn F16B3.36  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product DJ-1 family protein / protease-related  note DJ-1 family protein / protease-related; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C56, PfpI (InterPro:IPR006286), ThiJ/PfpI (InterPro:IPR002818); BEST Arabidopsis thaliana protein match is: YLS5 (TAIR:AT2G38860.2); Has 5244 Blast hits to 3109 proteins in 919 species: Archae - 240; Bacteria - 4378; Metazoa - 61; Fungi - 59; Plants - 132; Viruses - 0; Other Eukaryotes - 374 (source: NCBI BLink).  protein_id AT3G02720.1p  transcript_id AT3G02720.1  protein_id AT3G02720.1p  transcript_id AT3G02720.1  
At3g02730	chr3:000589299	0.0	C/589299-589591,588889-588988,588570-588713	AT3G02730.1  CDS  gene_syn ATF1, THIOREDOXIN F-TYPE 1, TRXF1  gene TRXF1  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process positive regulation of catalytic activity|GO:0043085|11169189|IDA  go_function enzyme activator activity|GO:0008047|11169189|IDA  product TRXF1 (THIOREDOXIN F-TYPE 1); enzyme activator  note THIOREDOXIN F-TYPE 1 (TRXF1); FUNCTIONS IN: enzyme activator activity; INVOLVED IN: positive regulation of catalytic activity; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATF2; enzyme activator (TAIR:AT5G16400.1); Has 10196 Blast hits to 9837 proteins in 1664 species: Archae - 125; Bacteria - 4240; Metazoa - 1605; Fungi - 639; Plants - 965; Viruses - 3; Other Eukaryotes - 2619 (source: NCBI BLink).  protein_id AT3G02730.1p  transcript_id AT3G02730.1  protein_id AT3G02730.1p  transcript_id AT3G02730.1  
At3g02740	chr3:000590561	0.0	W/590561-590808,591041-591167,591258-591499,591598-591822,591914-592076,592169-592242,592452-592539,592609-592684,592765-592836,592938-593089	AT3G02740.1  CDS  gene_syn F13E7.32, F13E7_32  go_component plasma membrane|GO:0005886|17317660|IDA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT5G36260.1); Has 3132 Blast hits to 3120 proteins in 295 species: Archae - 0; Bacteria - 0; Metazoa - 1065; Fungi - 691; Plants - 1157; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).  protein_id AT3G02740.1p  transcript_id AT3G02740.1  protein_id AT3G02740.1p  transcript_id AT3G02740.1  
At3g02750	chr3:000595203	0.0	C/595203-595457,594672-595091,594140-594586,593601-594062	AT3G02750.3  CDS  gene_syn F13E7.31, F13E7_31  go_component chloroplast|GO:0009507||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C family protein / PP2C family protein  note protein phosphatase 2C family protein / PP2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT5G36250.1); Has 3090 Blast hits to 3065 proteins in 202 species: Archae - 0; Bacteria - 4; Metazoa - 1057; Fungi - 241; Plants - 1121; Viruses - 3; Other Eukaryotes - 664 (source: NCBI BLink).  protein_id AT3G02750.3p  transcript_id AT3G02750.3  protein_id AT3G02750.3p  transcript_id AT3G02750.3  
At3g02750	chr3:000595203	0.0	C/595203-595457,594672-595091,594469-594586,594140-594363,593601-594062	AT3G02750.1  CDS  gene_syn F13E7.31, F13E7_31  go_component chloroplast|GO:0009507||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C family protein / PP2C family protein  note protein phosphatase 2C family protein / PP2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT5G36250.1); Has 3763 Blast hits to 3747 proteins in 227 species: Archae - 0; Bacteria - 10; Metazoa - 1174; Fungi - 424; Plants - 1253; Viruses - 5; Other Eukaryotes - 897 (source: NCBI BLink).  protein_id AT3G02750.1p  transcript_id AT3G02750.1  protein_id AT3G02750.1p  transcript_id AT3G02750.1  
At3g02750	chr3:000595203	0.0	C/595203-595457,594672-595091,594469-594586,594140-594363,593601-594062	AT3G02750.2  CDS  gene_syn F13E7.31, F13E7_31  go_component chloroplast|GO:0009507||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C family protein / PP2C family protein  note protein phosphatase 2C family protein / PP2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT5G36250.1); Has 3763 Blast hits to 3747 proteins in 227 species: Archae - 0; Bacteria - 10; Metazoa - 1174; Fungi - 424; Plants - 1253; Viruses - 5; Other Eukaryotes - 897 (source: NCBI BLink).  protein_id AT3G02750.2p  transcript_id AT3G02750.2  protein_id AT3G02750.2p  transcript_id AT3G02750.2  
At3g02760	chr3:000599301	0.0	C/599301-600650,599047-599226,598699-598956,598202-598615,597982-598122,597588-597896	AT3G02760.1  CDS  gene_syn F13E7.30, F13E7_30  go_component cytoplasm|GO:0005737||IEA  go_component chloroplast|GO:0009507||IEA  go_process translation|GO:0006412||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_process histidyl-tRNA aminoacylation|GO:0006427||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function histidine-tRNA ligase activity|GO:0004821||IEA  go_function ATP binding|GO:0005524||IEA  go_process histidyl-tRNA aminoacylation|GO:0006427||ISS  go_function histidine-tRNA ligase activity|GO:0004821||ISS  product ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding  note ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding; FUNCTIONS IN: histidine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: histidyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histidyl-tRNA synthetase, class IIa, subgroup (InterPro:IPR015807), Aminoacyl-tRNA synthetase, class II (G, H, P and S), conserved region (InterPro:IPR002314), Anticodon-binding (InterPro:IPR004154), Histidyl-tRNA synthetase, class IIa (InterPro:IPR004516), Aminoacyl-tRNA synthetase, class II, conserved region (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: ATHRS1 (HISTIDYL-TRNA SYNTHETASE 1); histidine-tRNA ligase (TAIR:AT3G46100.1); Has 8716 Blast hits to 8702 proteins in 1667 species: Archae - 163; Bacteria - 3929; Metazoa - 277; Fungi - 181; Plants - 53; Viruses - 0; Other Eukaryotes - 4113 (source: NCBI BLink).  protein_id AT3G02760.1p  transcript_id AT3G02760.1  protein_id AT3G02760.1p  transcript_id AT3G02760.1  
At3g02770	chr3:000601701	0.0	C/601701-601884,601017-601333	AT3G02770.1  CDS  gene_syn F13E7.29, F13E7_29  go_process regulation of RNA metabolic process|GO:0051252||IEA  go_function ribonuclease inhibitor activity|GO:0008428||IEA  go_component cellular_component|GO:0005575||ND  product dimethylmenaquinone methyltransferase family protein  note dimethylmenaquinone methyltransferase family protein; FUNCTIONS IN: ribonuclease inhibitor activity; INVOLVED IN: regulation of RNA metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (InterPro:IPR005493), Ribonuclease E inhibitor RraA (InterPro:IPR010203); BEST Arabidopsis thaliana protein match is: dimethylmenaquinone methyltransferase family protein (TAIR:AT5G16450.2); Has 2119 Blast hits to 2119 proteins in 631 species: Archae - 46; Bacteria - 1524; Metazoa - 2; Fungi - 30; Plants - 58; Viruses - 0; Other Eukaryotes - 459 (source: NCBI BLink).  protein_id AT3G02770.1p  transcript_id AT3G02770.1  protein_id AT3G02770.1p  transcript_id AT3G02770.1  
At3g02780	chr3:000604434	0.0	C/604434-604648,603801-603856,603546-603637,603157-603259,602921-603058,602578-602828	AT3G02780.1  CDS  gene_syn ATISOPENTENYL DIPHOSPHE ISOMERASE 2, F13E7.28, F13E7_28, IDI2, IPIAT1, IPP2, ISOPENTENYL PYROPHOSPHATE:DIMETHYLALLYL PYROPHOSPHATE ISOMERASE 2, ISOPENTENYL PYROPHOSPHATE:DIMETHYLLALLYL PYROPHOSPHATE ISOMERASE  gene IPP2  function Encodes a protein with isopentenyl diphosphate:dimethylallyl diphosphate isomerase activity. There is genetic evidence that it functions in the mevalonate, but not the MEP biosynthetic pathway.  go_component chloroplast|GO:0009507|18431481|IDA  go_component mitochondrion|GO:0005739|18319397|IDA  go_component cytosol|GO:0005829|18319397|IDA  go_process isoprenoid biosynthetic process|GO:0008299|9484444|TAS  go_process flower development|GO:0009908|18319397|IMP  go_process chlorophyll biosynthetic process|GO:0015995|9484444|TAS  go_function isopentenyl-diphosphate delta-isomerase activity|GO:0004452|9484444|IDA  product IPP2 (ISOPENTENYL PYROPHOSPHATE:DIMETHYLALLYL PYROPHOSPHATE ISOMERASE 2); isopentenyl-diphosphate delta-isomerase  note ISOPENTENYL PYROPHOSPHATE:DIMETHYLALLYL PYROPHOSPHATE ISOMERASE 2 (IPP2); FUNCTIONS IN: isopentenyl-diphosphate delta-isomerase activity; INVOLVED IN: flower development, chlorophyll biosynthetic process, isoprenoid biosynthetic process; LOCATED IN: cytosol, mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), NUDIX hydrolase, core (InterPro:IPR000086), Isopentenyl-diphosphate delta-isomerase, type 1 (InterPro:IPR011876); BEST Arabidopsis thaliana protein match is: IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1); isopentenyl-diphosphate delta-isomerase (TAIR:AT5G16440.1); Has 1502 Blast hits to 1501 proteins in 469 species: Archae - 21; Bacteria - 633; Metazoa - 179; Fungi - 97; Plants - 127; Viruses - 0; Other Eukaryotes - 445 (source: NCBI BLink).  protein_id AT3G02780.1p  transcript_id AT3G02780.1  protein_id AT3G02780.1p  transcript_id AT3G02780.1  
At3g02790	chr3:000604926	0.0	W/604926-605243	AT3G02790.1  CDS  gene_syn F13E7.27, F13E7_27  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT5G16470.1); Has 55 Blast hits to 55 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT3G02790.1p  transcript_id AT3G02790.1  protein_id AT3G02790.1p  transcript_id AT3G02790.1  
At3g02800	chr3:000607553	0.0	C/607553-607704,607362-607455,607218-607275,607089-607132,606638-606901	AT3G02800.1  CDS  gene_syn F13E7.26, F13E7_26  go_process dephosphorylation|GO:0016311||IEA  go_function protein tyrosine phosphatase activity|GO:0004725||IEA  go_function phosphatase activity|GO:0016791||IEA  go_component cellular_component|GO:0005575||ND  go_function phosphoprotein phosphatase activity|GO:0004721||ISS  product phosphatase/ phosphoprotein phosphatase/ protein tyrosine phosphatase  note phosphatase/ phosphoprotein phosphatase/ protein tyrosine phosphatase; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Protein-tyrosine phosphatase, SIW14-like (InterPro:IPR004861); BEST Arabidopsis thaliana protein match is: tyrosine specific protein phosphatase family protein (TAIR:AT5G16480.1); Has 485 Blast hits to 476 proteins in 107 species: Archae - 0; Bacteria - 42; Metazoa - 5; Fungi - 252; Plants - 83; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).  protein_id AT3G02800.1p  transcript_id AT3G02800.1  protein_id AT3G02800.1p  transcript_id AT3G02800.1  
At3g02810	chr3:000610695	0.0	C/610695-610785,610419-610591,610116-610305,609646-610043,608729-609553	AT3G02810.1  CDS  gene_syn F13E7.25, F13E7_25  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G16500.1); Has 117506 Blast hits to 98016 proteins in 3367 species: Archae - 83; Bacteria - 17190; Metazoa - 46381; Fungi - 8932; Plants - 19974; Viruses - 807; Other Eukaryotes - 24139 (source: NCBI BLink).  protein_id AT3G02810.1p  transcript_id AT3G02810.1  protein_id AT3G02810.1p  transcript_id AT3G02810.1  
At3g02820	chr3:000611573	0.0	W/611573-611884,611974-612096,612720-612819,612981-613294	AT3G02820.1  CDS  gene_syn F13E7.24, F13E7_24  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process response to DNA damage stimulus|GO:0006974||IEA  go_process cell cycle|GO:0007049||IEA  go_process replication fork protection|GO:0048478||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function nucleic acid binding|GO:0003676||ISS  product zinc knuckle (CCHC-type) family protein  note zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: cell cycle, replication fork protection, response to DNA damage stimulus; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Replication fork protection component Swi3 (InterPro:IPR012923), Zinc finger, CCHC-type (InterPro:IPR001878); Has 310 Blast hits to 310 proteins in 102 species: Archae - 0; Bacteria - 4; Metazoa - 145; Fungi - 74; Plants - 50; Viruses - 2; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT3G02820.1p  transcript_id AT3G02820.1  protein_id AT3G02820.1p  transcript_id AT3G02820.1  
At3g02830	chr3:000614075	0.0	W/614075-614129,614257-614414,614548-614610,614730-614849,614935-615174,615271-615597,615686-615916	AT3G02830.1  CDS  gene_syn F13E7.23, F13E7_23, ZFN1, ZINC FINGER PROTEIN 1  gene ZFN1  function Encodes a zinc finger protein.  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function DNA binding|GO:0003677|15677315|TAS  go_function nuclease activity|GO:0004518|15677315|TAS  product ZFN1 (ZINC FINGER PROTEIN 1); DNA binding / nuclease/ nucleic acid binding  note ZINC FINGER PROTEIN 1 (ZFN1); FUNCTIONS IN: DNA binding, nucleic acid binding, nuclease activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: ZFN3 (ZINC FINGER NUCLEASE 3); DNA binding / nuclease/ nucleic acid binding (TAIR:AT5G16540.1); Has 827 Blast hits to 477 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 195; Fungi - 94; Plants - 483; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT3G02830.1p  transcript_id AT3G02830.1  protein_id AT3G02830.1p  transcript_id AT3G02830.1  
At3g02840	chr3:000618480	0.0	W/618480-619619	AT3G02840.1  CDS  gene_syn F13E7.22, F13E7_22  go_function binding|GO:0005488||IEA  go_process response to ozone|GO:0010193|19054359|IEP  go_process response to other organism|GO:0051707||ISS  product immediate-early fungal elicitor family protein  note immediate-early fungal elicitor family protein; FUNCTIONS IN: binding; INVOLVED IN: response to other organism, response to ozone; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein (TAIR:AT5G37490.1); Has 219 Blast hits to 219 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 218; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G02840.1p  transcript_id AT3G02840.1  protein_id AT3G02840.1p  transcript_id AT3G02840.1  
At3g02850	chr3:000623235	0.0	C/623235-623473,622428-622652,622281-622344,621874-622213,621499-621794,621344-621424,621169-621267,620667-621077,620220-620590,620028-620149,619701-619939	AT3G02850.1  CDS  gene_syn F13E7.21, F13E7_21, SKOR  gene SKOR  function member of Stelar K+ outward rectifying channel (SKOR) family. Mediates the delivery of K+ from stelar cells to the xylem in the roots towards the shoot. mRNA accumulation is modulated by abscisic acid. K+ gating activity is modulated by external and internal K+.  go_component membrane|GO:0016020||IEA  go_process potassium ion transport|GO:0006813|9741629|IDA  go_process potassium ion transport|GO:0006813|9741629|IMP  go_process response to abscisic acid stimulus|GO:0009737|9741629|IEP  go_function inward rectifier potassium channel activity|GO:0005242|9741629|IDA  go_function outward rectifier potassium channel activity|GO:0015271|9741629|IDA  go_function cyclic nucleotide binding|GO:0030551||ISS  product SKOR; cyclic nucleotide binding / inward rectifier potassium channel/ outward rectifier potassium channel  note SKOR; FUNCTIONS IN: outward rectifier potassium channel activity, cyclic nucleotide binding, inward rectifier potassium channel activity; INVOLVED IN: potassium ion transport, response to abscisic acid stimulus; LOCATED IN: membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Cyclic nucleotide-binding, conserved site (InterPro:IPR018488), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: GORK (GATED OUTWARDLY-RECTIFYING K+ CHANNEL); cyclic nucleotide binding / inward rectifier potassium channel/ outward rectifier potassium channel (TAIR:AT5G37500.1); Has 67941 Blast hits to 27572 proteins in 1148 species: Archae - 87; Bacteria - 5963; Metazoa - 34459; Fungi - 4640; Plants - 2148; Viruses - 1120; Other Eukaryotes - 19524 (source: NCBI BLink).  protein_id AT3G02850.1p  transcript_id AT3G02850.1  protein_id AT3G02850.1p  transcript_id AT3G02850.1  
At3g02860	chr3:000627069	0.0	C/627069-627157,626834-626933,626475-626634,625999-626278,625729-625804,625588-625634,625299-625485	AT3G02860.1  CDS  gene_syn F13E7.20, F13E7_20  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880); Has 2503 Blast hits to 1764 proteins in 186 species: Archae - 3; Bacteria - 99; Metazoa - 1145; Fungi - 230; Plants - 65; Viruses - 6; Other Eukaryotes - 955 (source: NCBI BLink).  protein_id AT3G02860.1p  transcript_id AT3G02860.1  protein_id AT3G02860.1p  transcript_id AT3G02860.1  
At3g02860	chr3:000627069	0.0	C/627069-627157,626834-626933,626475-626634,625999-626281,625729-625804,625588-625634,625299-625485	AT3G02860.2  CDS  gene_syn F13E7.20, F13E7_20  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880); Has 2643 Blast hits to 1868 proteins in 197 species: Archae - 0; Bacteria - 102; Metazoa - 1257; Fungi - 252; Plants - 70; Viruses - 6; Other Eukaryotes - 956 (source: NCBI BLink).  protein_id AT3G02860.2p  transcript_id AT3G02860.2  protein_id AT3G02860.2p  transcript_id AT3G02860.2  
At3g02870	chr3:000629670	0.0	C/629670-629682,629531-629577,629395-629445,629190-629270,629002-629105,628820-628904,628624-628678,628447-628490,628290-628358,628099-628199,627931-627987,627742-627841	AT3G02870.3  CDS  gene_syn F13E7.19, F13E7_19, VTC4  gene VTC4  function Encodes a L-galactose-1-phosphate phosphatase, involved in ascorbate biosynthesis.  go_component plasma membrane|GO:0005886|17644812|IDA  go_process inositol biosynthetic process|GO:0006021|19339506|IMP  go_process sulfur metabolic process|GO:0006790||ISS  go_process response to cold|GO:0009409|19339506|IMP  go_process L-ascorbic acid biosynthetic process|GO:0019853|16595667|IMP  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437||ISS  go_function 3 (2 ),5 -bisphosphate nucleotidase activity|GO:0008441||ISS  go_function inositol-1(or 4)-monophosphatase activity|GO:0008934|19339506|IDA  go_function L-galactose-1-phosphate phosphatase activity|GO:0010347|15550539|IDA  go_function L-galactose-1-phosphate phosphatase activity|GO:0010347|16595667|IMP  go_function L-galactose-1-phosphate phosphatase activity|GO:0010347|19339506|IDA  product VTC4; 3 (2 ),5 -bisphosphate nucleotidase/ L-galactose-1-phosphate phosphatase/ inositol or phosphatidylinositol phosphatase/ inositol-1(or 4)-monophosphatase  note VTC4; FUNCTIONS IN: L-galactose-1-phosphate phosphatase activity, 3 (2 ),5 -bisphosphate nucleotidase activity, inositol-1(or 4)-monophosphatase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: L-ascorbic acid biosynthetic process, sulfur metabolic process, response to cold, inositol biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inositol monophosphatase (InterPro:IPR000760); BEST Arabidopsis thaliana protein match is: IMPL1 (MYO-INOSITOL MONOPHOSPHATASE LIKE 1); 3 (2 ),5 -bisphosphate nucleotidase/ inositol or phosphatidylinositol phosphatase/ inositol-1(or 4)-monophosphatase (TAIR:AT1G31190.1); Has 11883 Blast hits to 11873 proteins in 1349 species: Archae - 148; Bacteria - 4741; Metazoa - 561; Fungi - 219; Plants - 163; Viruses - 0; Other Eukaryotes - 6051 (source: NCBI BLink).  protein_id AT3G02870.3p  transcript_id AT3G02870.3  protein_id AT3G02870.3p  transcript_id AT3G02870.3  
At3g02870	chr3:000629670	0.0	C/629670-629682,629531-629586,629395-629445,629190-629270,629002-629105,628820-628904,628624-628678,628447-628484,628290-628358,628099-628199,627931-627987,627742-627841	AT3G02870.2  CDS  gene_syn F13E7.19, F13E7_19, VTC4  gene VTC4  function Encodes a L-galactose-1-phosphate phosphatase, involved in ascorbate biosynthesis.  go_component plasma membrane|GO:0005886|17644812|IDA  go_process inositol biosynthetic process|GO:0006021|19339506|IMP  go_process sulfur metabolic process|GO:0006790||ISS  go_process response to cold|GO:0009409|19339506|IMP  go_process L-ascorbic acid biosynthetic process|GO:0019853|16595667|IMP  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437||ISS  go_function 3 (2 ),5 -bisphosphate nucleotidase activity|GO:0008441||ISS  go_function inositol-1(or 4)-monophosphatase activity|GO:0008934|19339506|IDA  go_function L-galactose-1-phosphate phosphatase activity|GO:0010347|15550539|IDA  go_function L-galactose-1-phosphate phosphatase activity|GO:0010347|16595667|IMP  go_function L-galactose-1-phosphate phosphatase activity|GO:0010347|19339506|IDA  product VTC4; 3 (2 ),5 -bisphosphate nucleotidase/ L-galactose-1-phosphate phosphatase/ inositol or phosphatidylinositol phosphatase/ inositol-1(or 4)-monophosphatase  note VTC4; FUNCTIONS IN: L-galactose-1-phosphate phosphatase activity, 3 (2 ),5 -bisphosphate nucleotidase activity, inositol-1(or 4)-monophosphatase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: L-ascorbic acid biosynthetic process, sulfur metabolic process, response to cold, inositol biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inositol monophosphatase (InterPro:IPR000760); BEST Arabidopsis thaliana protein match is: IMPL1 (MYO-INOSITOL MONOPHOSPHATASE LIKE 1); 3 (2 ),5 -bisphosphate nucleotidase/ inositol or phosphatidylinositol phosphatase/ inositol-1(or 4)-monophosphatase (TAIR:AT1G31190.1); Has 11804 Blast hits to 11794 proteins in 1343 species: Archae - 148; Bacteria - 4712; Metazoa - 565; Fungi - 213; Plants - 158; Viruses - 0; Other Eukaryotes - 6008 (source: NCBI BLink).  protein_id AT3G02870.2p  transcript_id AT3G02870.2  protein_id AT3G02870.2p  transcript_id AT3G02870.2  
At3g02870	chr3:000629670	0.0	C/629670-629682,629531-629586,629395-629445,629190-629270,629002-629105,628820-628904,628624-628678,628447-628490,628290-628358,628099-628199,627931-627987,627742-627841	AT3G02870.1  CDS  gene_syn F13E7.19, F13E7_19, VTC4  gene VTC4  function Encodes a L-galactose-1-phosphate phosphatase, involved in ascorbate biosynthesis.  go_component plasma membrane|GO:0005886|17644812|IDA  go_process inositol biosynthetic process|GO:0006021|19339506|IMP  go_process sulfur metabolic process|GO:0006790||ISS  go_process response to cold|GO:0009409|19339506|IMP  go_process L-ascorbic acid biosynthetic process|GO:0019853|16595667|IMP  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437||ISS  go_function 3 (2 ),5 -bisphosphate nucleotidase activity|GO:0008441||ISS  go_function inositol-1(or 4)-monophosphatase activity|GO:0008934|19339506|IDA  go_function L-galactose-1-phosphate phosphatase activity|GO:0010347|15550539|IDA  go_function L-galactose-1-phosphate phosphatase activity|GO:0010347|16595667|IMP  go_function L-galactose-1-phosphate phosphatase activity|GO:0010347|19339506|IDA  product VTC4; 3 (2 ),5 -bisphosphate nucleotidase/ L-galactose-1-phosphate phosphatase/ inositol or phosphatidylinositol phosphatase/ inositol-1(or 4)-monophosphatase  note VTC4; FUNCTIONS IN: L-galactose-1-phosphate phosphatase activity, 3 (2 ),5 -bisphosphate nucleotidase activity, inositol-1(or 4)-monophosphatase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: L-ascorbic acid biosynthetic process, sulfur metabolic process, response to cold, inositol biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inositol monophosphatase (InterPro:IPR000760); BEST Arabidopsis thaliana protein match is: IMPL1 (MYO-INOSITOL MONOPHOSPHATASE LIKE 1); 3 (2 ),5 -bisphosphate nucleotidase/ inositol or phosphatidylinositol phosphatase/ inositol-1(or 4)-monophosphatase (TAIR:AT1G31190.1); Has 11845 Blast hits to 11835 proteins in 1345 species: Archae - 148; Bacteria - 4720; Metazoa - 562; Fungi - 214; Plants - 162; Viruses - 0; Other Eukaryotes - 6039 (source: NCBI BLink).  protein_id AT3G02870.1p  transcript_id AT3G02870.1  protein_id AT3G02870.1p  transcript_id AT3G02870.1  
At3g02875	chr3:000631993	0.0	W/631993-632352,632447-632572,632821-633135,633228-633356,633461-633859	AT3G02875.1  CDS  gene_syn F13E7.18, F13E7_18, IAA-AMINO ACID HYDROLASE, IAA-LEUCINE RESISTANT 1, ILR1  gene ILR1  function Hydrolyzes amino acid conjugates of the plant growth regulator indole-3-acetic acid (IAA), including IAA-Leu and IAA-Phe. Uses Mg and Co ions as cofactors.  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process proteolysis|GO:0006508||ISS  go_process auxin metabolic process|GO:0009850|7792599|IMP  go_function metallopeptidase activity|GO:0008237||ISS  go_function IAA-Phe conjugate hydrolase activity|GO:0010210|11923288|IDA  go_function IAA-Leu conjugate hydrolase activity|GO:0010211|11923288|IDA  product ILR1 (IAA-LEUCINE RESISTANT 1); IAA-Leu conjugate hydrolase/ IAA-Phe conjugate hydrolase/ metallopeptidase  note IAA-LEUCINE RESISTANT 1 (ILR1); FUNCTIONS IN: metallopeptidase activity, IAA-Leu conjugate hydrolase activity, IAA-Phe conjugate hydrolase activity; INVOLVED IN: proteolysis, auxin metabolic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M20 (InterPro:IPR002933), Peptidase M20D, amidohydrolase (InterPro:IPR010168), Peptidase M20, dimerisation (InterPro:IPR011650), Peptidase M20D, mername-AA028/carboxypeptidase Ss1 (InterPro:IPR017439); BEST Arabidopsis thaliana protein match is: IAR3 (IAA-ALANINE RESISTANT 3); IAA-Ala conjugate hydrolase/ metallopeptidase (TAIR:AT1G51760.1); Has 7414 Blast hits to 7409 proteins in 993 species: Archae - 66; Bacteria - 4334; Metazoa - 46; Fungi - 188; Plants - 180; Viruses - 0; Other Eukaryotes - 2600 (source: NCBI BLink).  protein_id AT3G02875.1p  transcript_id AT3G02875.1  protein_id AT3G02875.1p  transcript_id AT3G02875.1  
At3g02880	chr3:000634819	0.0	W/634819-636109,636297-636614,636708-636982	AT3G02880.1  CDS  gene_syn F13E7.17, F13E7_17  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: anchored to plasma membrane, cell wall, plasma membrane, membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Transmembrane protein SKG6 (InterPro:IPR014805), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: LRR1; ATP binding / kinase/ protein serine/threonine kinase (TAIR:AT5G16590.1); Has 94595 Blast hits to 73516 proteins in 2606 species: Archae - 48; Bacteria - 5811; Metazoa - 32324; Fungi - 4897; Plants - 38717; Viruses - 264; Other Eukaryotes - 12534 (source: NCBI BLink).  protein_id AT3G02880.1p  transcript_id AT3G02880.1  protein_id AT3G02880.1p  transcript_id AT3G02880.1  
At3g02885	chr3:000638934	0.0	C/638934-639011,638740-638773,638323-638504	AT3G02885.1  CDS  gene_syn GASA5, GAST1 PROTEIN HOMOLOG 5  gene GASA5  go_component endomembrane system|GO:0012505||IEA  go_process response to gibberellin stimulus|GO:0009739||ISS  product GASA5 (GAST1 PROTEIN HOMOLOG 5)  note GAST1 PROTEIN HOMOLOG 5 (GASA5); INVOLVED IN: response to gibberellin stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: gibberellin-regulated family protein (TAIR:AT2G30810.1); Has 251 Blast hits to 251 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 251; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G02885.1p  transcript_id AT3G02885.1  protein_id AT3G02885.1p  transcript_id AT3G02885.1  
At3g02890	chr3:000641043	0.0	W/641043-641645,641799-641884,641988-642082,642167-642460,642572-642910,643078-643672,643753-643983,644097-644221,644479-644669,644863-645010,645119-645303	AT3G02890.1  CDS  gene_syn F13E7.16, F13E7_16  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product PHD finger protein-related  note PHD finger protein-related; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT5G16680.1); Has 2952 Blast hits to 2123 proteins in 212 species: Archae - 2; Bacteria - 202; Metazoa - 1771; Fungi - 239; Plants - 254; Viruses - 4; Other Eukaryotes - 480 (source: NCBI BLink).  protein_id AT3G02890.1p  transcript_id AT3G02890.1  protein_id AT3G02890.1p  transcript_id AT3G02890.1  
At3g02900	chr3:000645850	0.0	W/645850-645886,646308-646422,646509-646605,647126-647206,647287-647445	AT3G02900.1  CDS  gene_syn F13E7.15, F13E7_15  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16660.1); Has 41 Blast hits to 41 proteins in 12 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G02900.1p  transcript_id AT3G02900.1  protein_id AT3G02900.1p  transcript_id AT3G02900.1  
At3g02910	chr3:000649986	0.0	W/649986-650549	AT3G02910.1  CDS  gene_syn F13E7.14, F13E7_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Butirosin biosynthesis, BtrG-like (InterPro:IPR013024), AIG2-like (InterPro:IPR009288); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46720.1); Has 210 Blast hits to 210 proteins in 66 species: Archae - 2; Bacteria - 27; Metazoa - 122; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT3G02910.1p  transcript_id AT3G02910.1  protein_id AT3G02910.1p  transcript_id AT3G02910.1  
At3g02920	chr3:000654088	0.0	C/654088-654189,653597-653701,653394-653491,653259-653300,653108-653185,652815-652893,652627-652728,652469-652545,652045-652113,651844-651928	AT3G02920.1  CDS  gene_syn F13E7.13, F13E7_13  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  product replication protein-related  note replication protein-related; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Replication protein A, subunit RPA32 (InterPro:IPR014646), Replication protein A, C-terminal (InterPro:IPR014892), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365); BEST Arabidopsis thaliana protein match is: RPA2 (REPLICON PROTEIN A2); protein binding (TAIR:AT2G24490.2); Has 328 Blast hits to 328 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 147; Fungi - 84; Plants - 61; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT3G02920.1p  transcript_id AT3G02920.1  protein_id AT3G02920.1p  transcript_id AT3G02920.1  
At3g02930	chr3:000655306	0.0	W/655306-655322,655809-656010,656118-658319	AT3G02930.1  CDS  gene_syn F13E7.12, F13E7_12  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16730.1); Has 190257 Blast hits to 89038 proteins in 2489 species: Archae - 2139; Bacteria - 30463; Metazoa - 84815; Fungi - 13664; Plants - 7242; Viruses - 1031; Other Eukaryotes - 50903 (source: NCBI BLink).  protein_id AT3G02930.1p  transcript_id AT3G02930.1  protein_id AT3G02930.1p  transcript_id AT3G02930.1  
At3g02940	chr3:000662141	0.0	W/662141-662403,663037-663702,663794-663830	AT3G02940.1  CDS  gene_syn AtMYB107, F13E7.11, F13E7_11, MYB107, myb domain protein 107  gene MYB107  function Encodes a putative transcription factor (MYB107).  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product MYB107 (myb domain protein 107); DNA binding / transcription factor  note myb domain protein 107 (MYB107); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, response to salicylic acid stimulus; EXPRESSED IN: embryo, sepal, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: AtMYB9 (myb domain protein 9); DNA binding / transcription factor (TAIR:AT5G16770.2); Has 6341 Blast hits to 5865 proteins in 361 species: Archae - 0; Bacteria - 0; Metazoa - 633; Fungi - 301; Plants - 3810; Viruses - 3; Other Eukaryotes - 1594 (source: NCBI BLink).  protein_id AT3G02940.1p  transcript_id AT3G02940.1  protein_id AT3G02940.1p  transcript_id AT3G02940.1  
At3g02950	chr3:000665840	0.0	C/665840-666439,665631-665741	AT3G02950.1  CDS  gene_syn F13E7.10, F13E7_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Tho complex subunit 7 (InterPro:IPR018018), Tho complex subunit 7/Mft1p (InterPro:IPR008501); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16790.1); Has 2049 Blast hits to 1787 proteins in 271 species: Archae - 31; Bacteria - 158; Metazoa - 1041; Fungi - 168; Plants - 75; Viruses - 26; Other Eukaryotes - 550 (source: NCBI BLink).  protein_id AT3G02950.1p  transcript_id AT3G02950.1  protein_id AT3G02950.1p  transcript_id AT3G02950.1  
At3g02960	chr3:000668618	0.0	C/668618-668626,668354-668528,667850-668025,667624-667717,667245-667531	AT3G02960.1  CDS  gene_syn F13E7.9, F13E7_9  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_process copper ion transport|GO:0006825||ISS  go_function copper ion binding|GO:0005507||ISS  product copper-binding protein-related  note copper-binding protein-related; FUNCTIONS IN: copper ion binding, metal ion binding; INVOLVED IN: copper ion transport, metal ion transport; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: metal ion binding (TAIR:AT5G50740.3); Has 893 Blast hits to 663 proteins in 72 species: Archae - 2; Bacteria - 36; Metazoa - 19; Fungi - 9; Plants - 815; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT3G02960.1p  transcript_id AT3G02960.1  protein_id AT3G02960.1p  transcript_id AT3G02960.1  
At3g02970	chr3:000669961	0.0	C/669961-670495,669217-669680	AT3G02970.1  CDS  gene_syn EXL6, EXORDIUM LIKE 6, F13E7.8, F13E7_8  gene EXL6  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product EXL6 (EXORDIUM LIKE 6)  note EXORDIUM LIKE 6 (EXL6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Phosphate-induced protein 1 conserved region (InterPro:IPR006766); BEST Arabidopsis thaliana protein match is: PHI-1 (PHOSPHATE-INDUCED 1) (TAIR:AT1G35140.1); Has 229 Blast hits to 229 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 229; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G02970.1p  transcript_id AT3G02970.1  protein_id AT3G02970.1p  transcript_id AT3G02970.1  
At3g02980	chr3:000672070	0.0	C/672070-672215,671845-671989,671435-671534,671106-671334,670897-671020	AT3G02980.1  CDS  gene_syn F13E7.7, F13E7_7  go_process metabolic process|GO:0008152||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product GCN5-related N-acetyltransferase (GNAT) family protein  note GCN5-related N-acetyltransferase (GNAT) family protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: GCN5-related N-acetyltransferase (GNAT) family protein (TAIR:AT5G16800.2); Has 461 Blast hits to 460 proteins in 132 species: Archae - 25; Bacteria - 24; Metazoa - 215; Fungi - 32; Plants - 52; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).  protein_id AT3G02980.1p  transcript_id AT3G02980.1  protein_id AT3G02980.1p  transcript_id AT3G02980.1  
At3g02990	chr3:000673614	0.0	W/673614-673859,674828-675988	AT3G02990.1  CDS  gene_syn ATHSFA1E, F13E7.6, F13E7_6, HEAT SHOCK TRANSCRIPTION FACTOR A1E, HSFA1E  gene ATHSFA1E  function member of Heat Stress Transcription Factor (Hsf) family  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product ATHSFA1E; DNA binding / transcription factor  note ATHSFA1E; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: HSF3 (HEAT SHOCK FACTOR 3); DNA binding / transcription factor (TAIR:AT5G16820.2); Has 1670 Blast hits to 1648 proteins in 171 species: Archae - 0; Bacteria - 7; Metazoa - 373; Fungi - 324; Plants - 516; Viruses - 0; Other Eukaryotes - 450 (source: NCBI BLink).  protein_id AT3G02990.1p  transcript_id AT3G02990.1  protein_id AT3G02990.1p  transcript_id AT3G02990.1  
At3g03000	chr3:000677388	0.0	W/677388-677885	AT3G03000.1  CDS  gene_syn F13E7.5, F13E7_5  function Calmodulin like protein localized in the plant vacuolar compartment with a function of binding and modifying the activity of a tonoplast transporter (AtNHX1) from within the vacuole in a Ca+2- and pH-dependent manner  go_component plant-type vacuole|GO:0000325|16249341|IDA  go_process regulation of ion transport|GO:0043269|16249341|IDA  go_function calcium ion binding|GO:0005509||ISS  go_function protein binding|GO:0005515|16249341|IPI  product calmodulin, putative  note calmodulin, putative; FUNCTIONS IN: protein binding, calcium ion binding; INVOLVED IN: regulation of ion transport; LOCATED IN: plant-type vacuole; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin, putative (TAIR:AT1G32250.1); Has 19207 Blast hits to 14153 proteins in 1310 species: Archae - 0; Bacteria - 65; Metazoa - 8172; Fungi - 4770; Plants - 3197; Viruses - 0; Other Eukaryotes - 3003 (source: NCBI BLink).  protein_id AT3G03000.1p  transcript_id AT3G03000.1  protein_id AT3G03000.1p  transcript_id AT3G03000.1  
At3g03010	chr3:000679934	0.0	C/679934-680137,679778-679836,679630-679689,679460-679529,679250-679319,679122-679148,678982-679031	AT3G03010.1  CDS  gene_syn F13E7.4, F13E7_4  go_process translation|GO:0006412||IEA  go_function aminoacyl-tRNA hydrolase activity|GO:0004045||IEA  go_component cellular_component|GO:0005575||ND  product aminoacyl-tRNA hydrolase  note aminoacyl-tRNA hydrolase; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, PTH2 (InterPro:IPR002833); BEST Arabidopsis thaliana protein match is: aminoacyl-tRNA hydrolase (TAIR:AT5G16870.1); Has 625 Blast hits to 625 proteins in 230 species: Archae - 158; Bacteria - 4; Metazoa - 158; Fungi - 86; Plants - 40; Viruses - 8; Other Eukaryotes - 171 (source: NCBI BLink).  protein_id AT3G03010.1p  transcript_id AT3G03010.1  protein_id AT3G03010.1p  transcript_id AT3G03010.1  
At3g03010	chr3:000679934	0.0	C/679934-680137,679778-679836,679630-679689,679460-679529,679250-679319,679122-679148,678982-679031	AT3G03010.2  CDS  gene_syn F13E7.4, F13E7_4  go_process translation|GO:0006412||IEA  go_function aminoacyl-tRNA hydrolase activity|GO:0004045||IEA  go_component cellular_component|GO:0005575||ND  product aminoacyl-tRNA hydrolase  note aminoacyl-tRNA hydrolase; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, PTH2 (InterPro:IPR002833); BEST Arabidopsis thaliana protein match is: aminoacyl-tRNA hydrolase (TAIR:AT5G16870.1); Has 625 Blast hits to 625 proteins in 230 species: Archae - 158; Bacteria - 4; Metazoa - 158; Fungi - 86; Plants - 40; Viruses - 8; Other Eukaryotes - 171 (source: NCBI BLink).  protein_id AT3G03010.2p  transcript_id AT3G03010.2  protein_id AT3G03010.2p  transcript_id AT3G03010.2  
At3g03020	chr3:000681077	0.0	W/681077-681280	AT3G03020.1  CDS  gene_syn F13E7.3, F13E7_3  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G03020.1p  transcript_id AT3G03020.1  protein_id AT3G03020.1p  transcript_id AT3G03020.1  
At3g03020	chr3:000681077	0.0	W/681077-681280	AT3G03020.2  CDS  gene_syn F13E7.3, F13E7_3  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G03020.2p  transcript_id AT3G03020.2  protein_id AT3G03020.2p  transcript_id AT3G03020.2  
At3g03030	chr3:000682252	0.0	W/682252-683199,683286-683426,683515-683850	AT3G03030.1  CDS  gene_syn F13E7.2, F13E7_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G03040.1); Has 1229 Blast hits to 1193 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1229; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G03030.1p  transcript_id AT3G03030.1  protein_id AT3G03030.1p  transcript_id AT3G03030.1  
At3g03040	chr3:000684685	0.0	W/684685-685617,685713-685853,685933-686277	AT3G03040.1  CDS  gene_syn T17B22.27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G03030.1); Has 1188 Blast hits to 1151 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1188; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G03040.1p  transcript_id AT3G03040.1  protein_id AT3G03040.1p  transcript_id AT3G03040.1  
At3g03050	chr3:000687873	0.0	W/687873-688753,688832-689639,689881-691629	AT3G03050.1  CDS  gene_syn ATCSLD3, CELLULOSE SYNTHASE LIKE D3, CELLULOSE SYNTHASE-LIKE D3, CSLD3, KJK, KOJAK, T17B22.26, T17B22_26  gene CSLD3  function encodes a cellulose synthase like protein. mutations initiate root hairs that rupture at their tip soon after initiation. is required for the synthesis of a noncellulosic wall polysaccharide.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component endoplasmic reticulum|GO:0005783|11156607|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process polysaccharide biosynthetic process|GO:0000271||ISS  go_process response to cold|GO:0009409|18768911|IEP  go_process plant-type cell wall biogenesis|GO:0009832||ISS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  product CSLD3 (CELLULOSE SYNTHASE-LIKE D3); cellulose synthase/ transferase, transferring glycosyl groups  note CELLULOSE SYNTHASE-LIKE D3 (CSLD3); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: response to cyclopentenone, response to cold, plant-type cell wall biogenesis, polysaccharide biosynthetic process; LOCATED IN: endoplasmic reticulum, Golgi apparatus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: CSLD2 (CELLULOSE-SYNTHASE LIKE D2); cellulose synthase/ transferase, transferring glycosyl groups (TAIR:AT5G16910.1); Has 2045 Blast hits to 1867 proteins in 412 species: Archae - 4; Bacteria - 696; Metazoa - 1; Fungi - 4; Plants - 1279; Viruses - 5; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT3G03050.1p  transcript_id AT3G03050.1  protein_id AT3G03050.1p  transcript_id AT3G03050.1  
At3g03060	chr3:000692188	0.0	W/692188-692484,692714-692809,693084-693194,693288-693597,693828-693918,694117-694441,694681-694829,694917-695424	AT3G03060.1  CDS  gene_syn T17B22.25, T17B22_25  go_component cell wall|GO:0005618|16287169|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_function ATPase activity|GO:0016887||ISS  product ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding  note ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT5G16930.1); Has 28851 Blast hits to 22688 proteins in 1787 species: Archae - 819; Bacteria - 6885; Metazoa - 7634; Fungi - 3165; Plants - 1476; Viruses - 115; Other Eukaryotes - 8757 (source: NCBI BLink).  protein_id AT3G03060.1p  transcript_id AT3G03060.1  protein_id AT3G03060.1p  transcript_id AT3G03060.1  
At3g03070	chr3:000697932	0.0	C/697932-698069,696808-696892,696593-696702	AT3G03070.1  CDS  go_component mitochondrion|GO:0005739|14671022|IDA  product NADH-ubiquinone oxidoreductase-related  note NADH-ubiquinone oxidoreductase-related; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NADH dehydrogenase [ubiquinone] (complex I), iron-sulphur protein 6, mitochondria (InterPro:IPR016668); Has 203 Blast hits to 203 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 109; Fungi - 55; Plants - 28; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT3G03070.1p  transcript_id AT3G03070.1  protein_id AT3G03070.1p  transcript_id AT3G03070.1  
At3g03080	chr3:000700033	0.0	C/700033-700278,699579-699756,699170-699336,698990-699072,698530-698908	AT3G03080.1  CDS  gene_syn T17B22.23, T17B22_23  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  product NADP-dependent oxidoreductase, putative  note NADP-dependent oxidoreductase, putative; FUNCTIONS IN: oxidoreductase activity, binding, zinc ion binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: AT-AER (alkenal reductase); 2-alkenal reductase (TAIR:AT5G16970.1); Has 10998 Blast hits to 10984 proteins in 1014 species: Archae - 73; Bacteria - 4892; Metazoa - 712; Fungi - 726; Plants - 316; Viruses - 0; Other Eukaryotes - 4279 (source: NCBI BLink).  protein_id AT3G03080.1p  transcript_id AT3G03080.1  protein_id AT3G03080.1p  transcript_id AT3G03080.1  
At3g03090	chr3:000704535	0.0	C/704535-704579,704091-704194,703818-703896,703534-703593,703323-703389,703109-703233,702527-702628,702035-702403,701910-701957,701748-701810,701523-701603,701327-701425,701069-701206,700749-700880	AT3G03090.1  CDS  gene_syn Arabidopsis thaliana vacuolar glucose transporter 1, AtVGT1, T17B22.22, T17B22_22  gene AtVGT1  function Encodes a vacuolar membrane-localized glucose transporter that can also transport fructose. Mutations in these gene have effects on seed germination and time to flowering.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component vacuolar membrane|GO:0005774|17284600|IDA  go_component plant-type vacuole membrane|GO:0009705|17284600|IDA  go_component membrane|GO:0016020||ISS  go_process response to nematode|GO:0009624|16478044|IEP  go_process seed germination|GO:0009845|17284600|IMP  go_process positive regulation of flower development|GO:0009911|17284600|IMP  go_process fructose transport|GO:0015755|17284600|IDA  go_process glucose transport|GO:0015758|17284600|IDA  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function fructose transmembrane transporter activity|GO:0005353|17284600|IDA  go_function glucose transmembrane transporter activity|GO:0005355|17284600|IDA  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product AtVGT1 (Arabidopsis thaliana vacuolar glucose transporter 1); carbohydrate transmembrane transporter/ fructose transmembrane transporter/ glucose transmembrane transporter/ sugar:hydrogen symporter  note Arabidopsis thaliana vacuolar glucose transporter 1 (AtVGT1); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, glucose transmembrane transporter activity, fructose transmembrane transporter activity; INVOLVED IN: glucose transport, positive regulation of flower development, seed germination, fructose transport, response to nematode; LOCATED IN: plant-type vacuole membrane, vacuolar membrane, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter family protein (TAIR:AT5G17010.3); Has 24814 Blast hits to 24431 proteins in 1410 species: Archae - 388; Bacteria - 13025; Metazoa - 3891; Fungi - 4711; Plants - 1319; Viruses - 0; Other Eukaryotes - 1480 (source: NCBI BLink).  protein_id AT3G03090.1p  transcript_id AT3G03090.1  protein_id AT3G03090.1p  transcript_id AT3G03090.1  
At3g03100	chr3:000707487	0.0	C/707487-707578,707080-707106,706207-706302,705822-705927,705564-705722	AT3G03100.2  CDS  gene_syn T17B22.21, T17B22_21  go_function NADH dehydrogenase (ubiquinone) activity|GO:0008137||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_function oxidoreductase activity|GO:0016491||ISS  product NADH:ubiquinone oxidoreductase family protein  note NADH:ubiquinone oxidoreductase family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, NADH dehydrogenase (ubiquinone) activity; LOCATED IN: mitochondrion, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase 17.2 kD subunit (InterPro:IPR007763); Has 1246 Blast hits to 1246 proteins in 224 species: Archae - 0; Bacteria - 240; Metazoa - 117; Fungi - 52; Plants - 31; Viruses - 0; Other Eukaryotes - 806 (source: NCBI BLink).  protein_id AT3G03100.2p  transcript_id AT3G03100.2  protein_id AT3G03100.2p  transcript_id AT3G03100.2  
At3g03100	chr3:000707487	0.0	C/707487-707578,707080-707106,706211-706302,705822-705931,705564-705722	AT3G03100.1  CDS  gene_syn T17B22.21, T17B22_21  go_function NADH dehydrogenase (ubiquinone) activity|GO:0008137||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_function oxidoreductase activity|GO:0016491||ISS  product NADH:ubiquinone oxidoreductase family protein  note NADH:ubiquinone oxidoreductase family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, NADH dehydrogenase (ubiquinone) activity; LOCATED IN: mitochondrion, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase 17.2 kD subunit (InterPro:IPR007763); Has 1253 Blast hits to 1253 proteins in 224 species: Archae - 0; Bacteria - 240; Metazoa - 121; Fungi - 52; Plants - 29; Viruses - 0; Other Eukaryotes - 811 (source: NCBI BLink).  protein_id AT3G03100.1p  transcript_id AT3G03100.1  protein_id AT3G03100.1p  transcript_id AT3G03100.1  
At3g03110	chr3:000708966	0.0	W/708966-709064,709376-709492,709633-709725,709818-709889,710087-710194,710268-710350,710442-710580,710665-710733,710817-710894,711090-711152,711243-711287,711457-711564,711715-711813,711921-712124,712380-712439,712763-712873,713099-713196,713370-713478,713995-714060,714133-714231,714314-714394,714471-714560,714710-714795,714894-714974,715063-715245,715456-715522,715686-715796,715921-716028,716118-716255,716338-716475,716562-716666,716757-716879	AT3G03110.1  CDS  gene_syn CRM1B, T17B22.20, T17B22_20, XPO1B  gene XPO1B  function Encodes a member of the exportin family (XPO1B)which function as receptors for nuclear transport.Along with XPO1A involved in the development of male and female gametophytes.  go_component nucleus|GO:0005634||IEA  go_component nuclear pore|GO:0005643||IEA  go_component cytoplasm|GO:0005737||IEA  go_function binding|GO:0005488||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component nucleus|GO:0005634||ISS  go_component nuclear pore|GO:0005643||ISS  go_component cytoplasm|GO:0005737||ISS  go_process protein import into nucleus, docking|GO:0000059||ISS  go_process embryo sac development|GO:0009553|18791220|IGI  go_process pollen development|GO:0009555|18791220|IGI  go_process pollen germination|GO:0009846|18791220|IGI  go_process pollen tube growth|GO:0009860|18791220|IGI  go_function protein transporter activity|GO:0008565||ISS  product XPO1B; binding / protein transporter  note XPO1B; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: pollen germination, pollen tube growth, protein import into nucleus, docking, embryo sac development, pollen development; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Exportin 1, C-terminal (InterPro:IPR014877), Armadillo-like helical (InterPro:IPR011989), Exportin-1/Importin-beta-like (InterPro:IPR013598), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: XPO1A; protein binding / protein transporter/ receptor (TAIR:AT5G17020.1); Has 1047 Blast hits to 1024 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 667; Fungi - 164; Plants - 65; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).  protein_id AT3G03110.1p  transcript_id AT3G03110.1  protein_id AT3G03110.1p  transcript_id AT3G03110.1  
At3g03120	chr3:000717345	0.0	W/717345-717401,717997-718087,718180-718295,718429-718488,718572-718637,718726-718914	AT3G03120.1  CDS  gene_syn ADP-ribosylation factor B1C, ATARFB1C, T17B22.19, T17B22_19  gene ATARFB1C  function A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor 1; ARF 1 (GP:385340) {Drosophila melanogaster}, other ARFs and ARF-like proteins.  go_component intracellular|GO:0005622||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function GTP binding|GO:0005525|12644670|ISS  product ATARFB1C (ADP-ribosylation factor B1C); GTP binding  note ADP-ribosylation factor B1C (ATARFB1C); FUNCTIONS IN: GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ATARFB1B; GTP binding (TAIR:AT5G17060.1); Has 9970 Blast hits to 9962 proteins in 378 species: Archae - 8; Bacteria - 8; Metazoa - 5342; Fungi - 1112; Plants - 1249; Viruses - 3; Other Eukaryotes - 2248 (source: NCBI BLink).  protein_id AT3G03120.1p  transcript_id AT3G03120.1  protein_id AT3G03120.1p  transcript_id AT3G03120.1  
At3g03130	chr3:000723451	0.0	C/723451-723564,722601-723075,722300-722503,721439-722208	AT3G03130.1  CDS  gene_syn T17B22.18, T17B22_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17160.1); Has 6511 Blast hits to 3260 proteins in 393 species: Archae - 10; Bacteria - 2333; Metazoa - 1613; Fungi - 601; Plants - 171; Viruses - 56; Other Eukaryotes - 1727 (source: NCBI BLink).  protein_id AT3G03130.1p  transcript_id AT3G03130.1  protein_id AT3G03130.1p  transcript_id AT3G03130.1  
At3g03140	chr3:000724348	0.0	W/724348-724529,724613-725160,725270-725536,725781-727093	AT3G03140.1  CDS  gene_syn T17B22.17, T17B22_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G21295.1); Has 422 Blast hits to 270 proteins in 77 species: Archae - 0; Bacteria - 12; Metazoa - 232; Fungi - 62; Plants - 66; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT3G03140.1p  transcript_id AT3G03140.1  protein_id AT3G03140.1p  transcript_id AT3G03140.1  
At3g03150	chr3:000729248	0.0	C/729248-729357,727733-727988	AT3G03150.1  CDS  gene_syn T17B22.16, T17B22_16  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17165.1); Has 24 Blast hits to 24 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G03150.1p  transcript_id AT3G03150.1  protein_id AT3G03150.1p  transcript_id AT3G03150.1  
At3g03160	chr3:000729876	0.0	W/729876-730268	AT3G03160.1  CDS  gene_syn T17B22.15, T17B22_15  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17190.1); Has 58 Blast hits to 58 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G03160.1p  transcript_id AT3G03160.1  protein_id AT3G03160.1p  transcript_id AT3G03160.1  
At3g03170	chr3:000732066	0.0	W/732066-732232,732426-732729	AT3G03170.1  CDS  gene_syn T17B22.14, T17B22_14  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 104 Blast hits to 104 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G03170.1p  transcript_id AT3G03170.1  protein_id AT3G03170.1p  transcript_id AT3G03170.1  
At3g03180	chr3:000733531	0.0	W/733531-733561,733666-733757,733843-733923,734003-734100,734204-734285,734383-734421	AT3G03180.1  CDS  gene_syn T17B22.13, T17B22_13  go_process vesicle-mediated transport|GO:0016192||IEA  go_component cellular_component|GO:0005575||ND  go_process vesicle-mediated transport|GO:0016192||ISS  go_function molecular_function|GO:0003674||ND  product Got1-like family protein  note Got1-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Got1-like protein (InterPro:IPR007305); BEST Arabidopsis thaliana protein match is: Got1-like family protein (TAIR:AT5G01430.1); Has 318 Blast hits to 318 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 133; Fungi - 75; Plants - 52; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT3G03180.1p  transcript_id AT3G03180.1  protein_id AT3G03180.1p  transcript_id AT3G03180.1  
At3g03190	chr3:000735071	0.0	W/735071-735217,735290-735338,735429-735877	AT3G03190.1  CDS  gene_syn ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, ATGSTF11, ATGSTF6, GLUTATHIONE S-TRANSFERASE, GLUTATHIONE S-TRANSFERASE F11, T17B22.12, T17B22_12  gene ATGSTF11  function Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cytoplasm|GO:0005737|12090627|NAS  go_process response to oxidative stress|GO:0006979|9449849|IEP  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTF11 (GLUTATHIONE S-TRANSFERASE F11); glutathione transferase  note GLUTATHIONE S-TRANSFERASE F11 (ATGSTF11); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: response to oxidative stress, toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12); glutathione transferase (TAIR:AT5G17220.1); Has 8211 Blast hits to 8208 proteins in 901 species: Archae - 0; Bacteria - 3607; Metazoa - 1722; Fungi - 330; Plants - 597; Viruses - 0; Other Eukaryotes - 1955 (source: NCBI BLink).  protein_id AT3G03190.1p  transcript_id AT3G03190.1  protein_id AT3G03190.1p  transcript_id AT3G03190.1  
At3g03200	chr3:000738371	0.0	C/738371-738527,737553-737833,737178-737459,736813-737061,736638-736707,736141-736541	AT3G03200.1  CDS  gene_syn Arabidopsis NAC domain containing protein 45, T17B22.11, T17B22_11, anac045  gene anac045  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac045 (Arabidopsis NAC domain containing protein 45); transcription factor  note Arabidopsis NAC domain containing protein 45 (anac045); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: root, stamen; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac086 (Arabidopsis NAC domain containing protein 86); transcription factor (TAIR:AT5G17260.1); Has 1855 Blast hits to 1840 proteins in 75 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 0; Plants - 1628; Viruses - 10; Other Eukaryotes - 210 (source: NCBI BLink).  protein_id AT3G03200.1p  transcript_id AT3G03200.1  protein_id AT3G03200.1p  transcript_id AT3G03200.1  
At3g03210	chr3:000740987	0.0	W/740987-742093	AT3G03210.1  CDS  gene_syn T17B22.10, T17B22_10  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 23 Blast hits to 23 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G03210.1p  transcript_id AT3G03210.1  protein_id AT3G03210.1p  transcript_id AT3G03210.1  
At3g03220	chr3:000743488	0.0	C/743488-743975,742655-742967	AT3G03220.1  CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN A13, ATEXP13, ATEXPA13, ATHEXP ALPHA 1.22, EXP13, EXPANSIN 13, T17B22.9, T17B22_9  gene ATEXPA13  function member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)  go_component extracellular region|GO:0005576||IEA  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828||ISS  go_process plant-type cell wall modification during multidimensional cell growth|GO:0009831||ISS  product ATEXPA13 (ARABIDOPSIS THALIANA EXPANSIN A13)  note ARABIDOPSIS THALIANA EXPANSIN A13 (ATEXPA13); INVOLVED IN: plant-type cell wall modification during multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: extracellular region; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16) (TAIR:AT3G55500.1); Has 1373 Blast hits to 1372 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1363; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT3G03220.1p  transcript_id AT3G03220.1  protein_id AT3G03220.1p  transcript_id AT3G03220.1  
At3g03230	chr3:000745770	0.0	C/745770-746009,745414-745625,744864-745119,744478-744771	AT3G03230.1  CDS  gene_syn T17B22.8, T17B22_8  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product esterase/lipase/thioesterase family protein  note esterase/lipase/thioesterase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: leaf; BEST Arabidopsis thaliana protein match is: esterase/lipase/thioesterase family protein (TAIR:AT3G03240.1); Has 370 Blast hits to 368 proteins in 85 species: Archae - 0; Bacteria - 153; Metazoa - 0; Fungi - 14; Plants - 179; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT3G03230.1p  transcript_id AT3G03230.1  protein_id AT3G03230.1p  transcript_id AT3G03230.1  
At3g03240	chr3:000748052	0.0	C/748052-748291,747730-747941,747219-747477,746781-747071	AT3G03240.1  CDS  gene_syn T17B22.7, T17B22_7  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product esterase/lipase/thioesterase family protein  note esterase/lipase/thioesterase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, sepal, carpel; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: esterase/lipase/thioesterase family protein (TAIR:AT3G03230.1); Has 412 Blast hits to 410 proteins in 101 species: Archae - 0; Bacteria - 180; Metazoa - 0; Fungi - 17; Plants - 184; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT3G03240.1p  transcript_id AT3G03240.1  protein_id AT3G03240.1p  transcript_id AT3G03240.1  
At3g03250	chr3:000753950	0.0	C/753950-754014,753792-753839,753405-753496,753235-753325,752958-753018,752800-752877,752665-752715,752488-752561,751866-751938,751716-751773,751443-751588,751098-751150,750946-751021,750799-750855,750619-750702,750427-750525,750235-750339,750081-750152,749761-749787	AT3G03250.1  CDS  gene_syn T17B22.6, T17B22_6, UDP-glucose pyrophosphorylase, UGP, UGPASE  gene UGP  function Is thought to encode a cytosolic UDP-glucose pyrophosphorylase with strong similarity to potato UTP--glucose-1-phosphate uridylyltransferase. Downregulated by flooding.  go_component plasma membrane|GO:0005886|17644812|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_process sucrose metabolic process|GO:0005985|11525517|TAS  go_process metabolic process|GO:0008152||ISS  go_process cellular response to phosphate starvation|GO:0016036|11525517|IEP  go_function UTP:glucose-1-phosphate uridylyltransferase activity|GO:0003983||ISS  product UGP (UDP-glucose pyrophosphorylase); UTP:glucose-1-phosphate uridylyltransferase/ nucleotidyltransferase  note UDP-glucose pyrophosphorylase (UGP); FUNCTIONS IN: UTP:glucose-1-phosphate uridylyltransferase activity, nucleotidyltransferase activity; INVOLVED IN: cellular response to phosphate starvation, response to salt stress, sucrose metabolic process, metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: UTP--glucose-1-phosphate uridylyltransferase, subgroup (InterPro:IPR016267), UTP--glucose-1-phosphate uridylyltransferase (InterPro:IPR002618); BEST Arabidopsis thaliana protein match is: UTP--glucose-1-phosphate uridylyltransferase, putative / UDP-glucose pyrophosphorylase, putative / UGPase, putative (TAIR:AT5G17310.2); Has 928 Blast hits to 923 proteins in 244 species: Archae - 0; Bacteria - 173; Metazoa - 296; Fungi - 210; Plants - 136; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).  protein_id AT3G03250.1p  transcript_id AT3G03250.1  protein_id AT3G03250.1p  transcript_id AT3G03250.1  
At3g03260	chr3:000759116	0.0	C/759116-759234,758897-759014,758617-758808,757951-758388,757748-757852,757344-757544,757077-757257,756027-756286,755851-755946,755356-755745	AT3G03260.1  CDS  gene_syn HDG8, HOMEODOMAIN GLABROUS 8, T17B22.5, T17B22_5  gene HDG8  function Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product HDG8 (HOMEODOMAIN GLABROUS 8); DNA binding / transcription factor  note HOMEODOMAIN GLABROUS 8 (HDG8); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: embryo, fruit, endosperm; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: HDG9 (HOMEODOMAIN GLABROUS 9); DNA binding / sequence-specific DNA binding / transcription factor (TAIR:AT5G17320.1); Has 4121 Blast hits to 4114 proteins in 318 species: Archae - 0; Bacteria - 0; Metazoa - 2689; Fungi - 97; Plants - 1291; Viruses - 1; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT3G03260.1p  transcript_id AT3G03260.1  protein_id AT3G03260.1p  transcript_id AT3G03260.1  
At3g03270	chr3:000762901	0.0	C/762901-763075,762684-762793,762438-762556,761383-761584	AT3G03270.1  CDS  gene_syn T17B22.4, T17B22_4  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to stress|GO:0006950||IEA  go_process response to stress|GO:0006950||ISS  product universal stress protein (USP) family protein / early nodulin ENOD18 family protein  note universal stress protein (USP) family protein / early nodulin ENOD18 family protein; INVOLVED IN: response to stress; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729); BEST Arabidopsis thaliana protein match is: universal stress protein (USP) family protein (TAIR:AT3G53990.1); Has 331 Blast hits to 331 proteins in 36 species: Archae - 0; Bacteria - 4; Metazoa - 8; Fungi - 10; Plants - 307; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G03270.1p  transcript_id AT3G03270.1  protein_id AT3G03270.1p  transcript_id AT3G03270.1  
At3g03270	chr3:000762901	0.0	C/762901-763075,762684-762793,762438-762556,762136-762211	AT3G03270.2  CDS  gene_syn T17B22.4, T17B22_4  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to stress|GO:0006950||IEA  go_process response to stress|GO:0006950||ISS  product universal stress protein (USP) family protein / early nodulin ENOD18 family protein  note universal stress protein (USP) family protein / early nodulin ENOD18 family protein; INVOLVED IN: response to stress; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: universal stress protein (USP) family protein (TAIR:AT3G53990.1); Has 2218 Blast hits to 2176 proteins in 452 species: Archae - 247; Bacteria - 1382; Metazoa - 43; Fungi - 77; Plants - 394; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT3G03270.2p  transcript_id AT3G03270.2  protein_id AT3G03270.2p  transcript_id AT3G03270.2  
At3g03272	chr3:000763833	0.0	C/763833-764195	AT3G03272.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17340.1); Has 17 Blast hits to 17 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G03272.1p  transcript_id AT3G03272.1  protein_id AT3G03272.1p  transcript_id AT3G03272.1  
At3g03280	chr3:000765559	0.0	W/765559-766059	AT3G03280.1  CDS  gene_syn T17B22.3, T17B22_3  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17350.1); Has 66 Blast hits to 66 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G03280.1p  transcript_id AT3G03280.1  protein_id AT3G03280.1p  transcript_id AT3G03280.1  
At3g03290	chr3:000766745	0.0	W/766745-767186,767272-767357,767446-767742	AT3G03290.1  CDS  gene_syn T17B22.2, T17B22_2  go_process response to stress|GO:0006950||IEA  go_process response to stress|GO:0006950||ISS  go_function molecular_function|GO:0003674||ND  product universal stress protein (USP) family protein  note universal stress protein (USP) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; EXPRESSED IN: leaf whorl, embryo; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729); BEST Arabidopsis thaliana protein match is: universal stress protein (USP) family protein (TAIR:AT5G17390.1); Has 191 Blast hits to 184 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 80; Fungi - 2; Plants - 83; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT3G03290.1p  transcript_id AT3G03290.1  protein_id AT3G03290.1p  transcript_id AT3G03290.1  
At3g03300	chr3:000774199	0.0	C/774199-774525,773781-773915,773553-773637,773385-773446,772830-772970,772558-772686,772347-772476,772160-772256,771784-771979,771543-771703,771219-771434,770893-771119,770549-770820,770038-770465,769853-769956,769595-769776,769293-769502,768809-769219,768445-768723,768020-768352	AT3G03300.2  CDS  gene_syn ATDCL2, DCL2, DICER-LIKE 2, T17B22.28  gene DCL2  function Encodes a Dicer-like protein that functions in the antiviral silencing response in turnip-crinkle virus-infected plants but not in TMV or CMV-strain-Y-infected plants. Involved in the production of ta-siRNAs. Partially antagonizes the production of miRNAs by DCL1. Substitutes for DCL4 to produce viral siRNA when DCL4 is missing or inhibited. Able to produce siRNAs but not miRNAs.  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function double-stranded RNA binding|GO:0003725||IEA  go_function helicase activity|GO:0004386||IEA  go_function ribonuclease III activity|GO:0004525||IEA  go_function ATP binding|GO:0005524||IEA  go_process maintenance of DNA methylation|GO:0010216|16699516|IMP  go_process RNA interference, production of ta-siRNAs|GO:0010267|16699516|IMP  go_process RNA interference, production of ta-siRNAs|GO:0010267|16810317|IMP  go_process gene silencing by miRNA, production of miRNAs|GO:0035196|16810317|IGI  go_process defense response to virus|GO:0051607|16741077|IMP  go_function ribonuclease III activity|GO:0004525||ISS  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DCL2 (DICER-LIKE 2); ATP binding / ATP-dependent helicase/ RNA binding / double-stranded RNA binding / helicase/ nucleic acid binding / ribonuclease III  note DICER-LIKE 2 (DCL2); FUNCTIONS IN: in 7 functions; INVOLVED IN: defense response to virus, maintenance of DNA methylation, RNA interference, production of ta-siRNAs, gene silencing by miRNA, production of miRNAs; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA binding (InterPro:IPR001159), Argonaute and Dicer protein, PAZ (InterPro:IPR003100), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), Dicer double-stranded RNA-binding fold (InterPro:IPR005034), Ribonuclease III (InterPro:IPR000999); BEST Arabidopsis thaliana protein match is: DCL4 (DICER-LIKE 4); RNA binding / protein binding / ribonuclease III (TAIR:AT5G20320.1); Has 7836 Blast hits to 7094 proteins in 1605 species: Archae - 142; Bacteria - 3046; Metazoa - 1603; Fungi - 749; Plants - 256; Viruses - 24; Other Eukaryotes - 2016 (source: NCBI BLink).  protein_id AT3G03300.2p  transcript_id AT3G03300.2  protein_id AT3G03300.2p  transcript_id AT3G03300.2  
At3g03300	chr3:000774757	0.0	C/774757-774833,774480-774657,774199-774312,773781-773915,773553-773637,773385-773446,772830-772970,772558-772686,772347-772476,772160-772256,771784-771979,771543-771703,771219-771434,770893-771119,770549-770820,770038-770465,769853-769956,769595-769776,769293-769502,768809-769219,768445-768723,768020-768352	AT3G03300.1  CDS  gene_syn ATDCL2, DCL2, DICER-LIKE 2, T17B22.28  gene DCL2  function Encodes a Dicer-like protein that functions in the antiviral silencing response in turnip-crinkle virus-infected plants but not in TMV or CMV-strain-Y-infected plants. Involved in the production of ta-siRNAs. Partially antagonizes the production of miRNAs by DCL1. Substitutes for DCL4 to produce viral siRNA when DCL4 is missing or inhibited. Able to produce siRNAs but not miRNAs.  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function double-stranded RNA binding|GO:0003725||IEA  go_function helicase activity|GO:0004386||IEA  go_function ribonuclease III activity|GO:0004525||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_process maintenance of DNA methylation|GO:0010216|16699516|IMP  go_process RNA interference, production of ta-siRNAs|GO:0010267|16699516|IMP  go_process RNA interference, production of ta-siRNAs|GO:0010267|16810317|IMP  go_process gene silencing by miRNA, production of miRNAs|GO:0035196|16810317|IGI  go_process defense response to virus|GO:0051607|16741077|IMP  go_function ribonuclease III activity|GO:0004525||ISS  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DCL2 (DICER-LIKE 2); ATP binding / ATP-dependent helicase/ RNA binding / double-stranded RNA binding / helicase/ nucleic acid binding / ribonuclease III  note DICER-LIKE 2 (DCL2); FUNCTIONS IN: in 7 functions; INVOLVED IN: defense response to virus, maintenance of DNA methylation, RNA interference, production of ta-siRNAs, gene silencing by miRNA, production of miRNAs; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Double-stranded RNA binding (InterPro:IPR001159), Argonaute and Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Dicer double-stranded RNA-binding fold (InterPro:IPR005034), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DCL4 (DICER-LIKE 4); RNA binding / protein binding / ribonuclease III (TAIR:AT5G20320.1); Has 8435 Blast hits to 7407 proteins in 1611 species: Archae - 202; Bacteria - 3165; Metazoa - 1778; Fungi - 858; Plants - 271; Viruses - 24; Other Eukaryotes - 2137 (source: NCBI BLink).  protein_id AT3G03300.1p  transcript_id AT3G03300.1  protein_id AT3G03300.1p  transcript_id AT3G03300.1  
At3g03305	chr3:000777962	0.0	C/777962-778271,777425-777666,775752-777314,775504-775620	AT3G03305.1  CDS  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product calcineurin-like phosphoesterase family protein  note calcineurin-like phosphoesterase family protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); Has 124 Blast hits to 123 proteins in 42 species: Archae - 0; Bacteria - 6; Metazoa - 49; Fungi - 7; Plants - 30; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT3G03305.1p  transcript_id AT3G03305.1  protein_id AT3G03305.1p  transcript_id AT3G03305.1  
At3g03310	chr3:000781269	0.0	C/781269-781488,781023-781114,780634-780761,780422-780557,780260-780311,780075-780175,779753-779935,779493-779650,779283-779337,779060-779113,778767-778931	AT3G03310.1  CDS  gene_syn T21P5.27, T21P5_27  go_process lipid metabolic process|GO:0006629||IEA  go_function phosphatidylcholine-sterol O-acyltransferase activity|GO:0004607||IEA  go_component cellular_component|GO:0005575||ND  go_process lipid metabolic process|GO:0006629||ISS  go_function phosphatidylcholine-sterol O-acyltransferase activity|GO:0004607||ISS  product lecithin:cholesterol acyltransferase family protein / LACT family protein  note lecithin:cholesterol acyltransferase family protein / LACT family protein; FUNCTIONS IN: phosphatidylcholine-sterol O-acyltransferase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lecithin:cholesterol acyltransferase (InterPro:IPR003386); BEST Arabidopsis thaliana protein match is: lecithin:cholesterol acyltransferase family protein / LACT family protein (TAIR:AT4G19860.1); Has 367 Blast hits to 361 proteins in 102 species: Archae - 2; Bacteria - 30; Metazoa - 160; Fungi - 6; Plants - 75; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).  protein_id AT3G03310.1p  transcript_id AT3G03310.1  protein_id AT3G03310.1p  transcript_id AT3G03310.1  
At3g03320	chr3:000781872	0.0	W/781872-782043,782133-782260,782365-782425,782512-782560,782693-782747,782834-782921,783016-783134,783227-783289	AT3G03320.1  CDS  gene_syn T21P5.26, T21P5_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ProFAR isomerase-like (InterPro:IPR010759), ASCH domain (InterPro:IPR007374); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G43465.1); Has 65 Blast hits to 65 proteins in 18 species: Archae - 31; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT3G03320.1p  transcript_id AT3G03320.1  protein_id AT3G03320.1p  transcript_id AT3G03320.1  
At3g03330	chr3:000786073	0.0	C/786073-786148,785941-785996,785804-785837,785617-785715,785370-785518,785226-785264,784967-785059,784552-784650,784235-784336,783963-784046,783818-783883,783572-783661	AT3G03330.1  CDS  gene_syn T21P5.25, T21P5_25  go_component plasma membrane|GO:0005886|17644812|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: binding / catalytic/ oxidoreductase (TAIR:AT3G03350.1); Has 74927 Blast hits to 74788 proteins in 2221 species: Archae - 429; Bacteria - 43026; Metazoa - 5922; Fungi - 3901; Plants - 1509; Viruses - 2; Other Eukaryotes - 20138 (source: NCBI BLink).  protein_id AT3G03330.1p  transcript_id AT3G03330.1  protein_id AT3G03330.1p  transcript_id AT3G03330.1  
At3g03340	chr3:000786439	0.0	W/786439-786585,786874-786926,787246-787414,787505-787568,787686-787765,787861-788008,788297-788358,788441-788503,788782-788840,789142-789223,789300-789328,789421-789654,789744-789762	AT3G03340.1  CDS  gene_syn T21P5.24, T21P5_24, UNE6, unfertilized embryo sac 6  gene UNE6  go_process double fertilization forming a zygote and endosperm|GO:0009567|15634699|IMP  product UNE6 (unfertilized embryo sac 6)  note unfertilized embryo sac 6 (UNE6); INVOLVED IN: double fertilization forming a zygote and endosperm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LUC7 related (InterPro:IPR004882); BEST Arabidopsis thaliana protein match is: LUC7 N_terminus domain-containing protein (TAIR:AT5G17440.1); Has 23908 Blast hits to 9547 proteins in 342 species: Archae - 19; Bacteria - 288; Metazoa - 14411; Fungi - 2998; Plants - 1703; Viruses - 82; Other Eukaryotes - 4407 (source: NCBI BLink).  protein_id AT3G03340.1p  transcript_id AT3G03340.1  protein_id AT3G03340.1p  transcript_id AT3G03340.1  
At3g03341	chr3:000790338	0.0	C/790338-790556	AT3G03341.1  CDS  product unknown protein  note unknown protein; Has 48 Blast hits to 48 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 10; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G03341.1p  transcript_id AT3G03341.1  protein_id AT3G03341.1p  transcript_id AT3G03341.1  
At3g03350	chr3:000791273	0.0	W/791273-791509,791943-791977,792493-792556,792698-792733,792928-793068,793414-793452,793536-793628,793946-794044,794247-794348,794533-794553	AT3G03350.1  CDS  gene_syn T21P5.23, T21P5_23  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process metabolic process|GO:0008152||ISS  go_function oxidoreductase activity|GO:0016491||ISS  product binding / catalytic/ oxidoreductase  note binding / catalytic/ oxidoreductase; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT3G03330.1); Has 24120 Blast hits to 24109 proteins in 1615 species: Archae - 131; Bacteria - 14823; Metazoa - 2006; Fungi - 856; Plants - 368; Viruses - 2; Other Eukaryotes - 5934 (source: NCBI BLink).  protein_id AT3G03350.1p  transcript_id AT3G03350.1  protein_id AT3G03350.1p  transcript_id AT3G03350.1  
At3g03356	chr3:000794907	0.0	W/794907-795032	AT3G03356.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G03356.1p  transcript_id AT3G03356.1  protein_id AT3G03356.1p  transcript_id AT3G03356.1  
At3g03360	chr3:000795218	0.0	W/795218-795286,795363-796265,796380-796562,796628-796918	AT3G03360.1  CDS  gene_syn T21P5.22, T21P5_22  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product F-box family protein  note F-box family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18150.1); Has 1468 Blast hits to 1443 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 1453; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT3G03360.1p  transcript_id AT3G03360.1  protein_id AT3G03360.1p  transcript_id AT3G03360.1  
At3g03370	chr3:000798444	0.0	C/798444-798473,797705-797883,797345-797383,797119-797308	AT3G03370.1  CDS  gene_syn T21P5.21, T21P5_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive protein-related (TAIR:AT5G06050.1); Has 26 Blast hits to 26 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G03370.1p  transcript_id AT3G03370.1  protein_id AT3G03370.1p  transcript_id AT3G03370.1  
At3g03380	chr3:000799720	0.0	W/799720-800005,800295-800365,800509-800643,800902-800960,801162-801198,801521-801646,802100-802189,802632-802697,802792-802848,802972-803037,803262-803369,803689-803769,804116-804165,804322-804487,804889-805365,805923-806105,806177-806282,806413-806583,806703-806782,806862-807089,807229-807444,807607-807764,807902-808013,808155-808319	AT3G03380.1  CDS  gene_syn AT3G03390, DegP protease 7, DegP7, T21P5.20, T21P5_20  gene DegP7  function Encodes a putative DegP protease.  go_process proteolysis|GO:0006508||IEA  go_function catalytic activity|GO:0003824||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process proteolysis|GO:0006508||ISS  go_function serine-type peptidase activity|GO:0008236||ISS  product DegP7 (DegP protease 7); catalytic/ protein binding / serine-type endopeptidase/ serine-type peptidase  note DegP protease 7 (DegP7); FUNCTIONS IN: serine-type peptidase activity, protein binding, catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase, trypsin-like serine and cysteine (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), PDZ/DHR/GLGF (InterPro:IPR001478); Has 5315 Blast hits to 5013 proteins in 1139 species: Archae - 30; Bacteria - 3570; Metazoa - 178; Fungi - 355; Plants - 62; Viruses - 0; Other Eukaryotes - 1120 (source: NCBI BLink).  protein_id AT3G03380.1p  transcript_id AT3G03380.1  protein_id AT3G03380.1p  transcript_id AT3G03380.1  
At3g03400	chr3:000808745	0.0	C/808745-809158	AT3G03400.1  CDS  gene_syn T21P5.18, T21P5_18  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calmodulin-related protein, putative  note calmodulin-related protein, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin-related protein, putative (TAIR:AT5G17470.1); Has 10949 Blast hits to 7978 proteins in 1057 species: Archae - 0; Bacteria - 36; Metazoa - 4504; Fungi - 2370; Plants - 2415; Viruses - 0; Other Eukaryotes - 1624 (source: NCBI BLink).  protein_id AT3G03400.1p  transcript_id AT3G03400.1  protein_id AT3G03400.1p  transcript_id AT3G03400.1  
At3g03405	chr3:000810712	0.0	C/810712-810795,810269-810462,809875-810178	AT3G03405.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated (InterPro:IPR006527); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G38590.1); Has 283 Blast hits to 212 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 283; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G03405.1p  transcript_id AT3G03405.1  protein_id AT3G03405.1p  transcript_id AT3G03405.1  
At3g03410	chr3:000811324	0.0	C/811324-811719	AT3G03410.1  CDS  gene_syn T21P5.17, T21P5_17  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calmodulin-related protein, putative  note calmodulin-related protein, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin-related protein, putative (TAIR:AT5G17470.1); Has 11658 Blast hits to 8243 proteins in 1037 species: Archae - 0; Bacteria - 67; Metazoa - 4809; Fungi - 2394; Plants - 2601; Viruses - 0; Other Eukaryotes - 1787 (source: NCBI BLink).  protein_id AT3G03410.1p  transcript_id AT3G03410.1  protein_id AT3G03410.1p  transcript_id AT3G03410.1  
At3g03420	chr3:000812527	0.0	W/812527-812632,812885-813006,813105-813242,813326-813409,813510-813644	AT3G03420.1  CDS  gene_syn T21P5.16, T21P5_16  go_component cellular_component|GO:0005575||ND  go_function binding|GO:0005488||ISS  product Ku70-binding family protein  note Ku70-binding family protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 246 Blast hits to 246 proteins in 129 species: Archae - 0; Bacteria - 0; Metazoa - 83; Fungi - 105; Plants - 28; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT3G03420.1p  transcript_id AT3G03420.1  protein_id AT3G03420.1p  transcript_id AT3G03420.1  
At3g03430	chr3:000814481	0.0	W/814481-814732	AT3G03430.1  CDS  gene_syn T21P5.15, T21P5_15  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product polcalcin, putative / calcium-binding pollen allergen, putative  note polcalcin, putative / calcium-binding pollen allergen, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: APC1 (ARABIDOPSIS POLLEN CALCIUM-BINDING PROTEIN 1); calcium ion binding (TAIR:AT5G17480.1); Has 9303 Blast hits to 6168 proteins in 947 species: Archae - 0; Bacteria - 31; Metazoa - 3617; Fungi - 1976; Plants - 2341; Viruses - 0; Other Eukaryotes - 1338 (source: NCBI BLink).  protein_id AT3G03430.1p  transcript_id AT3G03430.1  protein_id AT3G03430.1p  transcript_id AT3G03430.1  
At3g03440	chr3:000815709	0.0	W/815709-816121,817755-818568	AT3G03440.1  CDS  gene_syn T21P5.14, T21P5_14  go_component chloroplast|GO:0009507||IEA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product armadillo/beta-catenin repeat family protein  note armadillo/beta-catenin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein (TAIR:AT4G12710.1); Has 2688 Blast hits to 1855 proteins in 170 species: Archae - 0; Bacteria - 8; Metazoa - 791; Fungi - 396; Plants - 1264; Viruses - 0; Other Eukaryotes - 229 (source: NCBI BLink).  protein_id AT3G03440.1p  transcript_id AT3G03440.1  protein_id AT3G03440.1p  transcript_id AT3G03440.1  
At3g03450	chr3:000819636	0.0	C/819636-821279	AT3G03450.1  CDS  gene_syn RGA-LIKE 2, RGL2, T21P5.13, T21P5_13  gene RGL2  function Encodes a DELLA protein, a member of the GRAS superfamily of putative transcription factors. DELLA proteins restrain the cell proliferation and expansion that drives plant growth. Negative regulator of the response to GA in controlling seed germination. GA triggers the degradation of RGL2 protein in a process blocked by both proteasome inhibitors and serine/threonine phosphatase inhibitors. The protein undergoes degradation in response to GA via the 26S proteasome. RGL2 may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Rapidly degraded in response to GA. Regulates GA-promoted seed germination. Involved in flower and fruit development.  go_component nucleus|GO:0005634|11877383|TAS  go_component nucleus|GO:0005634|16167898|IDA  go_process response to salt stress|GO:0009651|16400150|IGI  go_process response to ethylene stimulus|GO:0009723|16400150|IGI  go_process response to abscisic acid stimulus|GO:0009737|16400150|IGI  go_process response to abscisic acid stimulus|GO:0009737|18941053|IEP  go_process response to gibberellin stimulus|GO:0009739|17333251|IEP  go_process response to gibberellin stimulus|GO:0009739|18941053|IEP  go_process gibberellic acid mediated signaling|GO:0009740|11877383|TAS  go_process seed germination|GO:0009845|17141619|IGI  go_process salicylic acid mediated signaling pathway|GO:0009863|18450451|IGI  go_process jasmonic acid mediated signaling pathway|GO:0009867|18450451|IGI  go_process negative regulation of gibberellic acid mediated signaling|GO:0009938|16167898|TAS  go_process seed dormancy|GO:0010162|17141619|IGI  go_process negative regulation of seed germination|GO:0010187|11877383|IMP  go_process hyperosmotic salinity response|GO:0042538|16400150|IGI  go_process regulation of oxygen and reactive oxygen species metabolic process|GO:0080010|18450450|IGI  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11877383|ISS  go_function transcription factor activity|GO:0003700|11877383|TAS  product RGL2 (RGA-LIKE 2); transcription factor  note RGA-LIKE 2 (RGL2); FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 13 processes; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: RGL3 (RGA-LIKE PROTEIN 3); transcription factor (TAIR:AT5G17490.1); Has 1577 Blast hits to 1536 proteins in 200 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 1572; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G03450.1p  transcript_id AT3G03450.1  protein_id AT3G03450.1p  transcript_id AT3G03450.1  
At3g03456	chr3:000822441	0.0	C/822441-822542	AT3G03456.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G03456.1p  transcript_id AT3G03456.1  protein_id AT3G03456.1p  transcript_id AT3G03456.1  
At3g03460	chr3:000824034	0.0	C/824034-824485,823069-823681	AT3G03460.1  CDS  gene_syn T21P5.12, T21P5_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17510.1); Has 19281 Blast hits to 8355 proteins in 385 species: Archae - 0; Bacteria - 328; Metazoa - 7312; Fungi - 1957; Plants - 1417; Viruses - 54; Other Eukaryotes - 8213 (source: NCBI BLink).  protein_id AT3G03460.1p  transcript_id AT3G03460.1  protein_id AT3G03460.1p  transcript_id AT3G03460.1  
At3g03470	chr3:000825154	0.0	C/825154-826345,824692-825035	AT3G03470.1  CDS  gene_syn CYP89A9, T21P5.11, T21P5_11  gene CYP89A9  function member of CYP89A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function oxygen binding|GO:0019825||ISS  product CYP89A9; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP89A9; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: response to cyclopentenone; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP89A5; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G64950.1); Has 21878 Blast hits to 21760 proteins in 1181 species: Archae - 21; Bacteria - 1712; Metazoa - 10136; Fungi - 3735; Plants - 5556; Viruses - 0; Other Eukaryotes - 718 (source: NCBI BLink).  protein_id AT3G03470.1p  transcript_id AT3G03470.1  protein_id AT3G03470.1p  transcript_id AT3G03470.1  
At3g03480	chr3:000829393	0.0	C/829393-829863,828400-829293	AT3G03480.1  CDS  gene_syn CHAT, T21P5.10, T21P5_10, acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase  gene CHAT  go_component cellular_component|GO:0005575||ND  go_process green leaf volatile biosynthetic process|GO:0010597|17163881|TAS  go_function acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase activity|GO:0010327|17163881|IDA  go_function acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase activity|GO:0010327|17163881|IMP  product CHAT (acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase); acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase  note acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (CHAT); FUNCTIONS IN: acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase activity; INVOLVED IN: green leaf volatile biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT5G17540.1); Has 1251 Blast hits to 1238 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 33; Plants - 1218; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G03480.1p  transcript_id AT3G03480.1  protein_id AT3G03480.1p  transcript_id AT3G03480.1  
At3g03490	chr3:000831717	0.0	C/831717-831759,831516-831558,831085-831382,830448-830764,830302-830347	AT3G03490.1  CDS  gene_syn PEX19-1, T21P5.9, T21P5_9, peroxin 19-1  gene PEX19-1  go_component peroxisome|GO:0005777||IEA  go_component peroxisome|GO:0005777||ISS  go_process peroxisome organization|GO:0007031|17478547|IMP  go_process peroxisome organization|GO:0007031||ISS  go_function molecular_function|GO:0003674||ND  product PEX19-1 (peroxin 19-1)  note peroxin 19-1 (PEX19-1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: peroxisome organization; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pex19 protein (InterPro:IPR006708); BEST Arabidopsis thaliana protein match is: PEX19-2 (TAIR:AT5G17550.1); Has 444 Blast hits to 432 proteins in 147 species: Archae - 3; Bacteria - 58; Metazoa - 156; Fungi - 107; Plants - 19; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT3G03490.1p  transcript_id AT3G03490.1  protein_id AT3G03490.1p  transcript_id AT3G03490.1  
At3g03500	chr3:000832929	0.0	W/832929-833051,833145-833218,833320-833401,833592-833743,833811-833964,834043-834156,834231-834350	AT3G03500.1  CDS  gene_syn T21P5.8, T21P5_8  go_component endomembrane system|GO:0012505||IEA  go_function endodeoxyribonuclease activity, producing 5 -phosphomonoesters|GO:0016888||IEA  go_process biological_process|GO:0008150||ND  go_function deoxyribonuclease activity|GO:0004536||ISS  product tatD-related deoxyribonuclease family protein  note tatD-related deoxyribonuclease family protein; FUNCTIONS IN: endodeoxyribonuclease activity, producing 5 -phosphomonoesters, deoxyribonuclease activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Deoxyribonuclease, TatD Mg-dependent (InterPro:IPR012278), Deoxyribonuclease, TatD (InterPro:IPR015992), Deoxyribonuclease, TatD-related, conserved site (InterPro:IPR018228), Deoxyribonuclease, TatD-related (InterPro:IPR001130); BEST Arabidopsis thaliana protein match is: tatD-related deoxyribonuclease family protein (TAIR:AT5G17570.1); Has 6599 Blast hits to 6599 proteins in 1447 species: Archae - 103; Bacteria - 3761; Metazoa - 247; Fungi - 174; Plants - 44; Viruses - 0; Other Eukaryotes - 2270 (source: NCBI BLink).  protein_id AT3G03500.1p  transcript_id AT3G03500.1  protein_id AT3G03500.1p  transcript_id AT3G03500.1  
At3g03510	chr3:000836340	0.0	W/836340-837707	AT3G03510.1  CDS  gene_syn T21P5.7, T21P5_7  go_component endomembrane system|GO:0012505||IEA  go_process response to light stimulus|GO:0009416||IEA  go_function signal transducer activity|GO:0004871||IEA  go_function protein binding|GO:0005515||IEA  go_process response to light stimulus|GO:0009416||ISS  go_function signal transducer activity|GO:0004871||ISS  product phototropic-responsive NPH3 family protein  note phototropic-responsive NPH3 family protein; FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: phototropic-responsive NPH3 family protein (TAIR:AT5G17580.1); Has 420 Blast hits to 394 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 420; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G03510.1p  transcript_id AT3G03510.1  protein_id AT3G03510.1p  transcript_id AT3G03510.1  
At3g03520	chr3:000840260	0.0	C/840260-840511,839709-840100,838678-839087,838394-838564,837972-838318	AT3G03520.1  CDS  gene_syn T21P5.6, T21P5_6  go_component vacuole|GO:0005773|15539469|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity, acting on ester bonds|GO:0016788||ISS  product phosphoesterase family protein  note phosphoesterase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole, membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoesterase (InterPro:IPR007312); BEST Arabidopsis thaliana protein match is: NPC4 (NONSPECIFIC PHOSPHOLIPASE C4); hydrolase, acting on ester bonds / phospholipase C (TAIR:AT3G03530.1); Has 1450 Blast hits to 1383 proteins in 241 species: Archae - 10; Bacteria - 1206; Metazoa - 0; Fungi - 97; Plants - 91; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT3G03520.1p  transcript_id AT3G03520.1  protein_id AT3G03520.1p  transcript_id AT3G03520.1  
At3g03530	chr3:000844525	0.0	C/844525-844970,844239-844436,843446-843855,843163-843333,842686-843077	AT3G03530.1  CDS  gene_syn NONSPECIFIC PHOSPHOLIPASE C4, NPC4, T21P5.5, T21P5_5  gene NPC4  function PHOSPHOESTERASE FAMILY PROTEIN, NPC4 is significantly induced upon phosphate starvation and plays an important role in the supply of inorganic phosphate and diacylglycerol from membrane-phospholipids during phosphate deprivation.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|15618226|IDA  go_process phospholipid catabolic process|GO:0009395|15618226|IDA  go_function phospholipase C activity|GO:0004629|15618226|IDA  go_function hydrolase activity, acting on ester bonds|GO:0016788||ISS  product NPC4 (NONSPECIFIC PHOSPHOLIPASE C4); hydrolase, acting on ester bonds / phospholipase C  note NONSPECIFIC PHOSPHOLIPASE C4 (NPC4); FUNCTIONS IN: hydrolase activity, acting on ester bonds, phospholipase C activity; INVOLVED IN: phospholipid catabolic process; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Phosphoesterase (InterPro:IPR007312); BEST Arabidopsis thaliana protein match is: NPC5 (NON-SPECIFIC PHOSPHOLIPASE C5); hydrolase, acting on ester bonds / phospholipase C (TAIR:AT3G03540.1); Has 1363 Blast hits to 1342 proteins in 219 species: Archae - 10; Bacteria - 1127; Metazoa - 0; Fungi - 97; Plants - 89; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT3G03530.1p  transcript_id AT3G03530.1  protein_id AT3G03530.1p  transcript_id AT3G03530.1  
At3g03540	chr3:000847855	0.0	C/847855-848297,847533-847730,847026-847435,846779-846949,846350-846693	AT3G03540.1  CDS  gene_syn NON-SPECIFIC PHOSPHOLIPASE C5, NPC5, T21P5.4  gene NPC5  function Encodes a nonspecific phospholipase C. Located in the cytosol. Involved in the conversion of phospholipids to glycolipids under phosphate deprivation conditions.  go_component cytosol|GO:0005829|18564386|IDA  go_process glycolipid biosynthetic process|GO:0009247|18564386|IMP  go_process phospholipid catabolic process|GO:0009395|18564386|IMP  go_process cellular response to phosphate starvation|GO:0016036|18564386|IMP  go_function phospholipase C activity|GO:0004629|18564386|IDA  go_function hydrolase activity, acting on ester bonds|GO:0016788||ISS  product NPC5 (NON-SPECIFIC PHOSPHOLIPASE C5); hydrolase, acting on ester bonds / phospholipase C  note NON-SPECIFIC PHOSPHOLIPASE C5 (NPC5); FUNCTIONS IN: hydrolase activity, acting on ester bonds, phospholipase C activity; INVOLVED IN: cellular response to phosphate starvation, phospholipid catabolic process, glycolipid biosynthetic process; LOCATED IN: cytosol; CONTAINS InterPro DOMAIN/s: Phosphoesterase (InterPro:IPR007312); BEST Arabidopsis thaliana protein match is: NPC4 (NONSPECIFIC PHOSPHOLIPASE C4); hydrolase, acting on ester bonds / phospholipase C (TAIR:AT3G03530.1); Has 1364 Blast hits to 1347 proteins in 221 species: Archae - 10; Bacteria - 1129; Metazoa - 0; Fungi - 97; Plants - 89; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT3G03540.1p  transcript_id AT3G03540.1  protein_id AT3G03540.1p  transcript_id AT3G03540.1  
At3g03550	chr3:000850391	0.0	C/850391-851461	AT3G03550.1  CDS  gene_syn T12J13.17, T12J13_17  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G17600.1); Has 6701 Blast hits to 6680 proteins in 235 species: Archae - 0; Bacteria - 2; Metazoa - 2034; Fungi - 549; Plants - 2786; Viruses - 81; Other Eukaryotes - 1249 (source: NCBI BLink).  protein_id AT3G03550.1p  transcript_id AT3G03550.1  protein_id AT3G03550.1p  transcript_id AT3G03550.1  
At3g03560	chr3:000856452	0.0	C/856452-856486,856270-856351,856118-856195,855973-856032,855769-855873,855566-855676,855443-855484,855140-855253,854859-855016,854619-854752,854431-854537,854286-854328,854119-854210,853992-854040,853824-853894,853610-853729,853446-853531,853274-853319,853153-853185	AT3G03560.1  CDS  gene_syn T21P5.2  go_component plasma membrane|GO:0005886|17317660|IDA  product unknown protein  note unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23490.1); Has 83 Blast hits to 80 proteins in 21 species: Archae - 3; Bacteria - 6; Metazoa - 5; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT3G03560.1p  transcript_id AT3G03560.1  protein_id AT3G03560.1p  transcript_id AT3G03560.1  
At3g03570	chr3:000857013	0.0	W/857013-857134,857234-857621,857773-857967,858058-858276,858365-858431,858520-858732,859063-859154,859256-859438,859526-859662,859898-860105	AT3G03570.1  CDS  gene_syn T12J13.15, T12J13_15  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP013022 (InterPro:IPR016607); BEST Arabidopsis thaliana protein match is: signal transducer (TAIR:AT4G40050.1); Has 153 Blast hits to 150 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT3G03570.1p  transcript_id AT3G03570.1  protein_id AT3G03570.1p  transcript_id AT3G03570.1  
At3g03580	chr3:000860695	0.0	C/860695-863343	AT3G03580.1  CDS  gene_syn T12J13.14, T12J13_14  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: DOT4 (DEFECTIVELY ORGANIZED TRIBUTARIES 4) (TAIR:AT4G18750.1); Has 19378 Blast hits to 5309 proteins in 162 species: Archae - 0; Bacteria - 2; Metazoa - 56; Fungi - 84; Plants - 18779; Viruses - 0; Other Eukaryotes - 457 (source: NCBI BLink).  protein_id AT3G03580.1p  transcript_id AT3G03580.1  protein_id AT3G03580.1p  transcript_id AT3G03580.1  
At3g03590	chr3:000866364	0.0	C/866364-866669,865341-865466	AT3G03590.1  CDS  gene_syn T12J13.13, T12J13_13  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SWIB complex BAF60b domain-containing protein  note SWIB complex BAF60b domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 (InterPro:IPR003121); BEST Arabidopsis thaliana protein match is: SWIB complex BAF60b domain-containing protein (TAIR:AT2G35605.1); Has 852 Blast hits to 809 proteins in 169 species: Archae - 0; Bacteria - 136; Metazoa - 165; Fungi - 132; Plants - 207; Viruses - 8; Other Eukaryotes - 204 (source: NCBI BLink).  protein_id AT3G03590.1p  transcript_id AT3G03590.1  protein_id AT3G03590.1p  transcript_id AT3G03590.1  
At3g03600	chr3:000867847	0.0	C/867847-868506	AT3G03600.1  CDS  gene_syn RIBOSOMAL PROTEIN S2, RPS2, T12J13.12, T12J13_12  gene RPS2  function Structural component of the mitochondrial ribosome small subunit  go_component mitochondrial small ribosomal subunit|GO:0005763|12369627|ISS  go_component mitochondrial small ribosomal subunit|GO:0005763||ISS  go_process translation|GO:0006412|12369627|TAS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735|12369627|TAS  go_function structural constituent of ribosome|GO:0003735||ISS  product RPS2 (RIBOSOMAL PROTEIN S2); structural constituent of ribosome  note RIBOSOMAL PROTEIN S2 (RPS2); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: mitochondrial small ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S2 (InterPro:IPR001865), Ribosomal protein S2, conserved site (InterPro:IPR018130), Ribosomal protein S2, bacterial-type (InterPro:IPR005706); Has 5136 Blast hits to 5136 proteins in 1524 species: Archae - 6; Bacteria - 2955; Metazoa - 133; Fungi - 80; Plants - 150; Viruses - 0; Other Eukaryotes - 1812 (source: NCBI BLink).  protein_id AT3G03600.1p  transcript_id AT3G03600.1  protein_id AT3G03600.1p  transcript_id AT3G03600.1  
At3g03610	chr3:000869479	0.0	W/869479-869628,869710-869812,869899-870011,870542-870610,870708-870823,870909-870963,871098-871218,871338-871480,871586-871687	AT3G03610.1  CDS  gene_syn T12J13.11, T12J13_11  go_component cytoskeleton|GO:0005856||IEA  go_process phagocytosis|GO:0006909||IEA  go_function molecular_function|GO:0003674||ND  product phagocytosis and cell motility protein ELMO1-related  note phagocytosis and cell motility protein ELMO1-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: phagocytosis; LOCATED IN: cytoskeleton; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Engulfment and cell motility, ELMO (InterPro:IPR006816); BEST Arabidopsis thaliana protein match is: phagocytosis and cell motility protein ELMO1-related (TAIR:AT1G03620.1); Has 636 Blast hits to 636 proteins in 97 species: Archae - 0; Bacteria - 0; Metazoa - 422; Fungi - 25; Plants - 106; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT3G03610.1p  transcript_id AT3G03610.1  protein_id AT3G03610.1p  transcript_id AT3G03610.1  
At3g03620	chr3:000875977	0.0	C/875977-876252,875346-875887,875073-875159,874926-874982,874581-874819,874281-874399,874083-874169,873904-873999	AT3G03620.1  CDS  gene_syn T12J13.10, T12J13_10  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: drug transporter activity, antiporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT5G17700.1); Has 4612 Blast hits to 4571 proteins in 997 species: Archae - 84; Bacteria - 2881; Metazoa - 116; Fungi - 206; Plants - 702; Viruses - 0; Other Eukaryotes - 623 (source: NCBI BLink).  protein_id AT3G03620.1p  transcript_id AT3G03620.1  protein_id AT3G03620.1p  transcript_id AT3G03620.1  
At3g03626	chr3:000877501	0.0	C/877501-877629	AT3G03626.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G03626.1p  transcript_id AT3G03626.1  protein_id AT3G03626.1p  transcript_id AT3G03626.1  
At3g03630	chr3:000880086	0.0	C/880086-880400,879857-879966,879722-879779,879373-879636,879146-879283,879016-879067,878864-878913,878718-878777,878548-878628,878388-878474	AT3G03630.1  CDS  gene_syn CS26, O-ACETYLSERINE (THIOL) LYASE, T12J13.9, T12J13_9  gene CS26  function O-acetylserine (thiol) lyase  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process cysteine biosynthetic process from serine|GO:0006535||IEA  go_process metabolic process|GO:0008152||IEA  go_process cysteine biosynthetic process|GO:0019344||ISS  go_function cysteine synthase activity|GO:0004124||ISS  product CS26; cysteine synthase  note CS26; FUNCTIONS IN: cysteine synthase activity; INVOLVED IN: cysteine biosynthetic process from serine, cysteine biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (InterPro:IPR001216), Cysteine synthase A (InterPro:IPR005859), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Cysteine synthase K/M (InterPro:IPR005856); BEST Arabidopsis thaliana protein match is: OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C); ATP binding / cysteine synthase (TAIR:AT3G59760.3); Has 13094 Blast hits to 13082 proteins in 1488 species: Archae - 241; Bacteria - 7576; Metazoa - 318; Fungi - 361; Plants - 355; Viruses - 0; Other Eukaryotes - 4243 (source: NCBI BLink).  protein_id AT3G03630.1p  transcript_id AT3G03630.1  protein_id AT3G03630.1p  transcript_id AT3G03630.1  
At3g03640	chr3:000881028	0.0	W/881028-881186,881595-881667,881763-881818,881892-881967,882061-882138,882239-882326,882421-882676,882754-882875,882955-883172,883262-883296,883384-883486,883573-883681,883806-884028	AT3G03640.1  CDS  gene_syn BETA GLUCOSIDASE 25, BETA-GLUCOSIDASE, BGLU25, GLUC, T12J13.8, T12J13_8  gene BGLU25  function Encodes beta-glucosidase (GLUC).  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU25 (BETA GLUCOSIDASE 25); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 25 (BGLU25); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU19 (BETA GLUCOSIDASE 19); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT3G21370.1); Has 5586 Blast hits to 5375 proteins in 794 species: Archae - 98; Bacteria - 3077; Metazoa - 587; Fungi - 134; Plants - 844; Viruses - 0; Other Eukaryotes - 846 (source: NCBI BLink).  protein_id AT3G03640.1p  transcript_id AT3G03640.1  protein_id AT3G03640.1p  transcript_id AT3G03640.1  
At3g03650	chr3:000885471	0.0	C/885471-886166,884917-885207,884298-884810	AT3G03650.1  CDS  gene_syn EDA5, T12J13.7, T12J13_7, embryo sac development arrest 5  gene EDA5  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process megagametogenesis|GO:0009561|15634699|IMP  go_process pollen tube development|GO:0048868|19237690|IMP  go_function catalytic activity|GO:0003824||ISS  product EDA5 (embryo sac development arrest 5); catalytic  note embryo sac development arrest 5 (EDA5); FUNCTIONS IN: catalytic activity; INVOLVED IN: megagametogenesis, pollen tube development; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: exostosin family protein (TAIR:AT3G45400.1); Has 625 Blast hits to 623 proteins in 41 species: Archae - 0; Bacteria - 6; Metazoa - 31; Fungi - 0; Plants - 536; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT3G03650.1p  transcript_id AT3G03650.1  protein_id AT3G03650.1p  transcript_id AT3G03650.1  
At3g03660	chr3:000891463	0.0	C/891463-892162,890736-890911,889515-889532	AT3G03660.2  CDS  gene_syn T12J13.6, T12J13_6, WOX11, WUSCHEL related homeobox 11  gene WOX11  function Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box.  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product WOX11 (WUSCHEL related homeobox 11); DNA binding / transcription factor  note WUSCHEL related homeobox 11 (WOX11); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WOX12 (WUSCHEL related homeobox 12); DNA binding / transcription factor (TAIR:AT5G17810.1); Has 542 Blast hits to 480 proteins in 78 species: Archae - 0; Bacteria - 30; Metazoa - 148; Fungi - 33; Plants - 308; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT3G03660.2p  transcript_id AT3G03660.2  protein_id AT3G03660.2p  transcript_id AT3G03660.2  
At3g03660	chr3:000891739	0.0	C/891739-892162,891463-891651,890736-890911,889515-889532	AT3G03660.1  CDS  gene_syn T12J13.6, T12J13_6, WOX11, WUSCHEL related homeobox 11  gene WOX11  function Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box.  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product WOX11 (WUSCHEL related homeobox 11); DNA binding / transcription factor  note WUSCHEL related homeobox 11 (WOX11); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WOX12 (WUSCHEL related homeobox 12); DNA binding / transcription factor (TAIR:AT5G17810.1); Has 345 Blast hits to 343 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 4; Plants - 292; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G03660.1p  transcript_id AT3G03660.1  protein_id AT3G03660.1p  transcript_id AT3G03660.1  
At3g03670	chr3:000903146	0.0	C/903146-903349,902380-902843,901985-902282	AT3G03670.1  CDS  gene_syn T12J13.5, T12J13_5  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: plant-type cell wall; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase 57 (PER57) (P57) (PRXR10) (TAIR:AT5G17820.1); Has 2744 Blast hits to 2726 proteins in 166 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 40; Plants - 2683; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT3G03670.1p  transcript_id AT3G03670.1  protein_id AT3G03670.1p  transcript_id AT3G03670.1  
At3g03680	chr3:000907624	0.0	W/907624-910677	AT3G03680.1  CDS  gene_syn T12J13.4, T12J13_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal, plant (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT5G12970.1); Has 12497 Blast hits to 7423 proteins in 739 species: Archae - 58; Bacteria - 1831; Metazoa - 3722; Fungi - 995; Plants - 1206; Viruses - 121; Other Eukaryotes - 4564 (source: NCBI BLink).  protein_id AT3G03680.1p  transcript_id AT3G03680.1  protein_id AT3G03680.1p  transcript_id AT3G03680.1  
At3g03690	chr3:000913151	0.0	C/913151-913643,912597-912672,912270-912385,911494-911945	AT3G03690.1  CDS  gene_syn T12J13.3, T12J13_3, UNE7, unfertilized embryo sac 7  gene UNE7  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process double fertilization forming a zygote and endosperm|GO:0009567|15634699|IMP  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_process pollen tube development|GO:0048868|19237690|IMP  go_function acetylglucosaminyltransferase activity|GO:0008375||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UNE7 (unfertilized embryo sac 7); acetylglucosaminyltransferase/ transferase, transferring glycosyl groups  note unfertilized embryo sac 7 (UNE7); FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: carbohydrate biosynthetic process, double fertilization forming a zygote and endosperm, pollen tube development; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 14 (InterPro:IPR003406); BEST Arabidopsis thaliana protein match is: glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein (TAIR:AT3G15350.2); Has 685 Blast hits to 682 proteins in 89 species: Archae - 0; Bacteria - 20; Metazoa - 450; Fungi - 0; Plants - 190; Viruses - 14; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT3G03690.1p  transcript_id AT3G03690.1  protein_id AT3G03690.1p  transcript_id AT3G03690.1  
At3g03702	chr3:000916356	0.0	C/916356-918834	AT3G03702.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT3G03700  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G03702.1  
At3g03700	chr3:000916503	0.0	W/916503-916604,916896-918044,918130-918327	AT3G03700.1  CDS  gene_syn F20H23.27  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04440.1); Has 204 Blast hits to 204 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 81; Plants - 87; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT3G03700.1p  transcript_id AT3G03700.1  protein_id AT3G03700.1p  transcript_id AT3G03700.1  
At3g03710	chr3:000919542	0.0	W/919542-919835,920018-920086,920214-920320,920421-920463,920542-920625,920892-920956,921049-921205,921312-921368,921453-921566,921667-921930,922036-922110,922339-922452,922583-922675,922837-923015,923112-923295,923372-923419,923527-923599,923724-923797,923886-923993,924077-924171,924248-924365,924455-924496,924595-924906	AT3G03710.1  CDS  gene_syn F20H23.26, RIF10, resistant to inhibition with FSM 10  gene RIF10  function Mutants impaired in the expression of this gene have been selected through their resistance to fosmidomycin, a strong inhibitor of DXR, an enzyme of the methylerythritol-dependent IPP biosynthesis pathway. The pathway enzymes were upregulated in the mutant seedlings.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_function 3 -5 -exoribonuclease activity|GO:0000175||IEA  go_function RNA binding|GO:0003723||IEA  go_function polyribonucleotide nucleotidyltransferase activity|GO:0004654||IEA  go_process negative regulation of isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway|GO:0010323|16531478|IMP  go_process chlorophyll biosynthetic process|GO:0015995|16531478|IMP  go_process carotene biosynthetic process|GO:0016120|16531478|IMP  go_process xanthophyll biosynthetic process|GO:0016123|16531478|IMP  go_function 3 -5 -exoribonuclease activity|GO:0000175||ISS  go_function nucleic acid binding|GO:0003676||ISS  go_function RNA binding|GO:0003723||ISS  product RIF10 (resistant to inhibition with FSM 10); 3 -5 -exoribonuclease/ RNA binding / nucleic acid binding / polyribonucleotide nucleotidyltransferase  note resistant to inhibition with FSM 10 (RIF10); FUNCTIONS IN: polyribonucleotide nucleotidyltransferase activity, 3 -5 -exoribonuclease activity, RNA binding, nucleic acid binding; INVOLVED IN: chlorophyll biosynthetic process, xanthophyll biosynthetic process, carotene biosynthetic process, negative regulation of isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), K Homology, type 1, subgroup (InterPro:IPR018111), Exoribonuclease, phosphorolytic domain 2 (InterPro:IPR015847), S1, RNA binding (InterPro:IPR003029), Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type (InterPro:IPR015848), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088), Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Polyribonucleotide nucleotidyltransferase (InterPro:IPR012162); BEST Arabidopsis thaliana protein match is: polyribonucleotide nucleotidyltransferase, putative (TAIR:AT5G14580.1); Has 19214 Blast hits to 17292 proteins in 1597 species: Archae - 250; Bacteria - 9663; Metazoa - 298; Fungi - 40; Plants - 132; Viruses - 0; Other Eukaryotes - 8831 (source: NCBI BLink).  protein_id AT3G03710.1p  transcript_id AT3G03710.1  protein_id AT3G03710.1p  transcript_id AT3G03710.1  
At3g03720	chr3:000929592	0.0	C/929592-929700,929304-929505,929139-929223,928768-928908,928561-928679,928378-928474,928006-928178,927821-927887,927511-927669,927084-927288,926844-926952,926438-926550,926098-926173,925870-926017	AT3G03720.2  CDS  gene_syn CAT4, CATIONIC AMINO ACID TRANSPORTER 4, F20H23.25, F20H23_25  gene CAT4  function Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters.  go_process transport|GO:0006810||IEA  go_process amino acid transport|GO:0006865||IEA  go_function cationic amino acid transmembrane transporter activity|GO:0015326||ISS  product CAT4 (CATIONIC AMINO ACID TRANSPORTER 4); cationic amino acid transmembrane transporter  note CATIONIC AMINO ACID TRANSPORTER 4 (CAT4); FUNCTIONS IN: cationic amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport, transport; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cationic amino acid transporter (InterPro:IPR015606), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease-associated region (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: CAT2 (CATIONIC AMINO ACID TRANSPORTER 2); amino acid transmembrane transporter (TAIR:AT1G58030.1).  protein_id AT3G03720.2p  transcript_id AT3G03720.2  protein_id AT3G03720.2p  transcript_id AT3G03720.2  
At3g03720	chr3:000930434	0.0	C/930434-930974,929592-929762,929304-929505,929139-929223,928768-928908,928561-928679,928378-928474,928006-928178,927821-927887,927511-927669,927084-927288,926844-926952,926438-926550,926098-926173,925870-926017	AT3G03720.1  CDS  gene_syn CAT4, CATIONIC AMINO ACID TRANSPORTER 4, F20H23.25, F20H23_25  gene CAT4  function Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process transport|GO:0006810||IEA  go_process amino acid transport|GO:0006865||IEA  go_function cationic amino acid transmembrane transporter activity|GO:0015326||ISS  product CAT4 (CATIONIC AMINO ACID TRANSPORTER 4); cationic amino acid transmembrane transporter  note CATIONIC AMINO ACID TRANSPORTER 4 (CAT4); FUNCTIONS IN: cationic amino acid transmembrane transporter activity; INVOLVED IN: transport, amino acid transport; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cationic amino acid transporter (InterPro:IPR015606), Protein of unknown function DUF295 (InterPro:IPR005174), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease-associated region (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: CAT2 (CATIONIC AMINO ACID TRANSPORTER 2); amino acid transmembrane transporter (TAIR:AT1G58030.1); Has 20259 Blast hits to 19280 proteins in 1295 species: Archae - 348; Bacteria - 14566; Metazoa - 1848; Fungi - 2005; Plants - 276; Viruses - 0; Other Eukaryotes - 1216 (source: NCBI BLink).  protein_id AT3G03720.1p  transcript_id AT3G03720.1  protein_id AT3G03720.1p  transcript_id AT3G03720.1  
At3g03726	chr3:000934224	0.0	C/934224-934464,933766-934113,933477-933709,933341-933388	AT3G03726.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G03730.1).  protein_id AT3G03726.1p  transcript_id AT3G03726.1  protein_id AT3G03726.1p  transcript_id AT3G03726.1  
At3g03726	chr3:000934224	0.0	C/934224-934464,933998-934113,933766-933922,933477-933709,933341-933388	AT3G03726.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G03730.1).  protein_id AT3G03726.2p  transcript_id AT3G03726.2  protein_id AT3G03726.2p  transcript_id AT3G03726.2  
At3g03730	chr3:000935139	0.0	C/935139-936320	AT3G03730.1  CDS  gene_syn F20H23.24, F20H23_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G12820.1); Has 249 Blast hits to 239 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 249; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G03730.1p  transcript_id AT3G03730.1  protein_id AT3G03730.1p  transcript_id AT3G03730.1  
At3g03740	chr3:000939353	0.0	C/939353-939807,937884-938229,937502-937784,937106-937419	AT3G03740.1  CDS  gene_syn ATBPM4, BTB-POZ and MATH domain 4, F20H23.23, F20H23_23  gene ATBPM4  go_function protein binding|GO:0005515||IEA  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ATBPM4 (BTB-POZ and MATH domain 4); protein binding  note BTB-POZ and MATH domain 4 (ATBPM4); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: ATBPM5 (BTB-POZ and MATH domain 5); protein binding (TAIR:AT5G21010.1); Has 4765 Blast hits to 4690 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 3585; Fungi - 73; Plants - 877; Viruses - 41; Other Eukaryotes - 189 (source: NCBI BLink).  protein_id AT3G03740.1p  transcript_id AT3G03740.1  protein_id AT3G03740.1p  transcript_id AT3G03740.1  
At3g03750	chr3:000939976	0.0	W/939976-940615,941135-941511	AT3G03750.1  CDS  gene_syn F20H23.22, F20H23_22, SDG20, SET DOMAIN PROTEIN 20, SUVR3  gene SDG20  go_component nucleus|GO:0005634||IEA  go_process chromatin modification|GO:0016568||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function histone-lysine N-methyltransferase activity|GO:0018024||IEA  product SET domain-containing protein  note SET DOMAIN PROTEIN 20 (SDG20); FUNCTIONS IN: zinc ion binding, histone-lysine N-methyltransferase activity; INVOLVED IN: chromatin modification; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), Pre-SET zinc-binding region (InterPro:IPR007728), Post-SET zinc-binding region (InterPro:IPR003616), AWS (InterPro:IPR006560); BEST Arabidopsis thaliana protein match is: nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT2G23740.1); Has 2232 Blast hits to 2216 proteins in 205 species: Archae - 0; Bacteria - 44; Metazoa - 1410; Fungi - 281; Plants - 358; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).  protein_id AT3G03750.1p  transcript_id AT3G03750.1  protein_id AT3G03750.1p  transcript_id AT3G03750.1  
At3g03750	chr3:000939976	0.0	W/939976-940639,941111-941511	AT3G03750.2  CDS  gene_syn F20H23.22, F20H23_22, SDG20, SET DOMAIN PROTEIN 20, SUVR3  gene SDG20  go_component nucleus|GO:0005634||IEA  go_process chromatin modification|GO:0016568||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function histone-lysine N-methyltransferase activity|GO:0018024||IEA  product SET domain-containing protein  note SET DOMAIN PROTEIN 20 (SDG20); FUNCTIONS IN: zinc ion binding, histone-lysine N-methyltransferase activity; INVOLVED IN: chromatin modification; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), Pre-SET zinc-binding region (InterPro:IPR007728), Post-SET zinc-binding region (InterPro:IPR003616), AWS (InterPro:IPR006560); BEST Arabidopsis thaliana protein match is: nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT2G23740.1); Has 3259 Blast hits to 3160 proteins in 304 species: Archae - 0; Bacteria - 208; Metazoa - 1798; Fungi - 323; Plants - 526; Viruses - 0; Other Eukaryotes - 404 (source: NCBI BLink).  protein_id AT3G03750.2p  transcript_id AT3G03750.2  protein_id AT3G03750.2p  transcript_id AT3G03750.2  
At3g03760	chr3:000943632	0.0	W/943632-944042,944263-944673	AT3G03760.1  CDS  gene_syn F20H23.21, F20H23_21, LBD20, LOB DOMAIN-CONTAINING PROTEIN 20  gene LBD20  product LBD20 (LOB DOMAIN-CONTAINING PROTEIN 20)  note LBD20 (LOB DOMAIN-CONTAINING PROTEIN 20); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883), Uncharacterised conserved protein UCP038127, LOB (InterPro:IPR017394); BEST Arabidopsis thaliana protein match is: JLO (JAGGED LATERAL ORGANS) (TAIR:AT4G00220.1); Has 528 Blast hits to 525 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 0; Plants - 511; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G03760.1p  transcript_id AT3G03760.1  protein_id AT3G03760.1p  transcript_id AT3G03760.1  
At3g03770	chr3:000947101	0.0	C/947101-948436,946873-947006,946539-946779,946237-946442,946120-946163,945840-945951,945448-945760,945303-945325	AT3G03770.1  CDS  gene_syn F20H23.20, F20H23_20  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT1G14390.1); Has 65164 Blast hits to 39058 proteins in 1166 species: Archae - 29; Bacteria - 2733; Metazoa - 19319; Fungi - 1458; Plants - 36193; Viruses - 86; Other Eukaryotes - 5346 (source: NCBI BLink).  protein_id AT3G03770.1p  transcript_id AT3G03770.1  protein_id AT3G03770.1p  transcript_id AT3G03770.1  
At3g03773	chr3:000951628	0.0	W/951628-951640,951775-951889,952235-952273,952388-952568,952710-952866,953063-953091,953186-953231,953456-953490	AT3G03773.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: CS domain (InterPro:IPR007052), HSP20-like chaperone (InterPro:IPR008978), CS (InterPro:IPR017447); BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G02450.2).  protein_id AT3G03773.2p  transcript_id AT3G03773.2  protein_id AT3G03773.2p  transcript_id AT3G03773.2  
At3g03773	chr3:000951885	0.0	W/951885-951889,952388-952568,952710-952866,953063-953091,953186-953231,953456-953490	AT3G03773.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: CS domain (InterPro:IPR007052), HSP20-like chaperone (InterPro:IPR008978), CS (InterPro:IPR017447); BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G02450.2); Has 482 Blast hits to 482 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 241; Fungi - 87; Plants - 64; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT3G03773.1p  transcript_id AT3G03773.1  protein_id AT3G03773.1p  transcript_id AT3G03773.1  
At3g03776	chr3:000954709	0.0	C/954709-954760,954144-954625	AT3G03776.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 861 Blast hits to 613 proteins in 133 species: Archae - 2; Bacteria - 90; Metazoa - 183; Fungi - 108; Plants - 301; Viruses - 58; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT3G03776.1p  transcript_id AT3G03776.1  protein_id AT3G03776.1p  transcript_id AT3G03776.1  
At3g03780	chr3:000957602	0.0	W/957602-957951,958052-958139,958237-958364,958460-958851,958957-959120,959207-959287,959395-959561,959655-959760,959843-960295,960372-960740	AT3G03780.1  CDS  gene_syn AtMS2, F20H23.19, F20H23_19  gene AtMS2  function Encodes a cytosolic methionine synthase, involved in methionine regeneration via the activated methyl cycle (or SAM cycle)  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytosol|GO:0005829|15024005|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process methionine biosynthetic process|GO:0009086||ISS  go_function 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity|GO:0003871||ISS  go_function methionine synthase activity|GO:0008705|15024005|IDA  product AtMS2; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase/ methionine synthase  note AtMS2; FUNCTIONS IN: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, methionine synthase activity; INVOLVED IN: response to cadmium ion, response to salt stress, methionine biosynthetic process; LOCATED IN: cytosol, apoplast, plasma membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal (InterPro:IPR013215), Methionine synthase, vitamin-B12 independent (InterPro:IPR002629), 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (InterPro:IPR006276); BEST Arabidopsis thaliana protein match is: ATMS1; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase/ methionine synthase (TAIR:AT5G17920.2); Has 2752 Blast hits to 2746 proteins in 941 species: Archae - 115; Bacteria - 1774; Metazoa - 11; Fungi - 146; Plants - 157; Viruses - 2; Other Eukaryotes - 547 (source: NCBI BLink).  protein_id AT3G03780.1p  transcript_id AT3G03780.1  protein_id AT3G03780.1p  transcript_id AT3G03780.1  
At3g03780	chr3:000957602	0.0	W/957602-957951,958052-958139,958237-958364,958460-958851,958957-959120,959207-959287,959395-959561,959655-959760,959843-960295,960372-960740	AT3G03780.2  CDS  gene_syn AtMS2, F20H23.19, F20H23_19  gene AtMS2  function Encodes a cytosolic methionine synthase, involved in methionine regeneration via the activated methyl cycle (or SAM cycle)  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytosol|GO:0005829|15024005|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process methionine biosynthetic process|GO:0009086||ISS  go_function 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity|GO:0003871||ISS  go_function methionine synthase activity|GO:0008705|15024005|IDA  product AtMS2; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase/ methionine synthase  note AtMS2; FUNCTIONS IN: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, methionine synthase activity; INVOLVED IN: response to cadmium ion, response to salt stress, methionine biosynthetic process; LOCATED IN: cytosol, apoplast, plasma membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal (InterPro:IPR013215), Methionine synthase, vitamin-B12 independent (InterPro:IPR002629), 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (InterPro:IPR006276); BEST Arabidopsis thaliana protein match is: ATMS1; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase/ methionine synthase (TAIR:AT5G17920.2); Has 2752 Blast hits to 2746 proteins in 941 species: Archae - 115; Bacteria - 1774; Metazoa - 11; Fungi - 146; Plants - 157; Viruses - 2; Other Eukaryotes - 547 (source: NCBI BLink).  protein_id AT3G03780.2p  transcript_id AT3G03780.2  protein_id AT3G03780.2p  transcript_id AT3G03780.2  
At3g03780	chr3:000957602	0.0	W/957602-957951,958052-958139,958237-958364,958460-958851,958957-959120,959207-959287,959395-959561,959655-959760,959843-960295,960372-960740	AT3G03780.3  CDS  gene_syn AtMS2, F20H23.19, F20H23_19  gene AtMS2  function Encodes a cytosolic methionine synthase, involved in methionine regeneration via the activated methyl cycle (or SAM cycle)  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component cytosol|GO:0005829|15024005|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process methionine biosynthetic process|GO:0009086||ISS  go_function 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity|GO:0003871||ISS  go_function methionine synthase activity|GO:0008705|15024005|IDA  product AtMS2; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase/ methionine synthase  note AtMS2; FUNCTIONS IN: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, methionine synthase activity; INVOLVED IN: response to salt stress, methionine biosynthetic process; LOCATED IN: cytosol, apoplast, chloroplast, plasma membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal (InterPro:IPR013215), Methionine synthase, vitamin-B12 independent (InterPro:IPR002629), 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (InterPro:IPR006276); BEST Arabidopsis thaliana protein match is: ATMS1; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase/ methionine synthase (TAIR:AT5G17920.2); Has 2752 Blast hits to 2746 proteins in 941 species: Archae - 115; Bacteria - 1774; Metazoa - 11; Fungi - 146; Plants - 157; Viruses - 2; Other Eukaryotes - 547 (source: NCBI BLink).  protein_id AT3G03780.3p  transcript_id AT3G03780.3  protein_id AT3G03780.3p  transcript_id AT3G03780.3  
At3g03790	chr3:000963195	0.0	W/963195-963467,963676-963853,963963-964191,964498-964637,964829-965118,965269-965481,965579-966076,966209-966865,966974-967516,967633-967857	AT3G03790.2  CDS  gene_syn F20H23.18, F20H23_18  go_process biological_process|GO:0008150||ND  go_function binding|GO:0005488||ISS  product ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein  note ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: regulator of chromosome condensation (RCC1) family protein (TAIR:AT5G60870.1); Has 38109 Blast hits to 15316 proteins in 584 species: Archae - 125; Bacteria - 3119; Metazoa - 20506; Fungi - 2053; Plants - 1874; Viruses - 205; Other Eukaryotes - 10227 (source: NCBI BLink).  protein_id AT3G03790.2p  transcript_id AT3G03790.2  protein_id AT3G03790.2p  transcript_id AT3G03790.2  
At3g03790	chr3:000963195	0.0	W/963195-963467,963676-963853,963972-964191,964498-964637,964829-965118,965269-965481,965579-966076,966209-966865,966974-967516,967633-967857	AT3G03790.1  CDS  gene_syn F20H23.18, F20H23_18  go_process biological_process|GO:0008150||ND  go_function binding|GO:0005488||ISS  product ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein  note ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: regulator of chromosome condensation (RCC1) family protein (TAIR:AT5G60870.1); Has 38478 Blast hits to 15313 proteins in 584 species: Archae - 135; Bacteria - 3223; Metazoa - 20732; Fungi - 2049; Plants - 1938; Viruses - 202; Other Eukaryotes - 10199 (source: NCBI BLink).  protein_id AT3G03790.1p  transcript_id AT3G03790.1  protein_id AT3G03790.1p  transcript_id AT3G03790.1  
At3g03800	chr3:000969314	0.0	W/969314-969331,969719-969823,969910-970015,970116-970204,970293-970366,970448-970490,970566-970626,970725-970754,970833-970906,970981-971061,971138-971203,971287-971460	AT3G03800.1  CDS  gene_syn ATSYP131, F20H23.28, F20H23_28, SYNTAXIN OF PLANTS 131, SYP131  gene SYP131  function member of SYP13 Gene Family  go_component plasma membrane|GO:0005886|17644812|IDA  go_process intracellular protein transport|GO:0006886|11115874|TAS  go_process membrane fusion|GO:0006944|11115874|TAS  go_function SNAP receptor activity|GO:0005484|11115874|TAS  product SYP131 (SYNTAXIN OF PLANTS 131); SNAP receptor  note SYNTAXIN OF PLANTS 131 (SYP131); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion, intracellular protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: SYP132 (SYNTAXIN OF PLANTS 132); SNAP receptor (TAIR:AT5G08080.1); Has 2135 Blast hits to 2135 proteins in 243 species: Archae - 2; Bacteria - 52; Metazoa - 1094; Fungi - 344; Plants - 279; Viruses - 0; Other Eukaryotes - 364 (source: NCBI BLink).  protein_id AT3G03800.1p  transcript_id AT3G03800.1  protein_id AT3G03800.1p  transcript_id AT3G03800.1  
At3g03810	chr3:000975737	0.0	C/975737-975901,975571-975655,975180-975250,975006-975094,974634-974877,974311-974423,973934-974024,973660-973788,972834-973387,972190-972619	AT3G03810.1  CDS  gene_syn EDA30, F20H23.17, F20H23_17, embryo sac development arrest 30  gene EDA30  go_component chloroplast|GO:0009507|18431481|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process polar nucleus fusion|GO:0010197|15634699|IMP  go_process pollen tube development|GO:0048868|19237690|IMP  go_function molecular_function|GO:0003674||ND  product EDA30 (embryo sac development arrest 30)  note embryo sac development arrest 30 (EDA30); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation, polar nucleus fusion, pollen tube development; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G30300.1); Has 433 Blast hits to 418 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 433; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G03810.1p  transcript_id AT3G03810.1  protein_id AT3G03810.1p  transcript_id AT3G03810.1  
At3g03820	chr3:000976933	0.0	C/976933-977223	AT3G03820.1  CDS  gene_syn F20H23.16, F20H23_16  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive protein, putative  note auxin-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT3G03840.1); Has 560 Blast hits to 557 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 559; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G03820.1p  transcript_id AT3G03820.1  protein_id AT3G03820.1p  transcript_id AT3G03820.1  
At3g03826	chr3:000978265	0.0	W/978265-978304,978383-978570	AT3G03826.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G43695.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G03826.1p  transcript_id AT3G03826.1  protein_id AT3G03826.1p  transcript_id AT3G03826.1  
At3g03828	chr3:000979453	0.0	W/979453-979498,979590-979780	AT3G03828.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03826.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G03828.1p  transcript_id AT3G03828.1  protein_id AT3G03828.1p  transcript_id AT3G03828.1  
At3g03830	chr3:000980119	0.0	C/980119-980397	AT3G03830.1  CDS  gene_syn F20H23.15, F20H23_15  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive protein, putative  note auxin-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT3G03850.1); Has 486 Blast hits to 483 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 485; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G03830.1p  transcript_id AT3G03830.1  protein_id AT3G03830.1p  transcript_id AT3G03830.1  
At3g03840	chr3:000981258	0.0	W/981258-981545	AT3G03840.1  CDS  gene_syn F20H23.14, F20H23_14  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive protein, putative  note auxin-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT3G03820.1); Has 578 Blast hits to 575 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 577; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G03840.1p  transcript_id AT3G03840.1  protein_id AT3G03840.1p  transcript_id AT3G03840.1  
At3g03845	chr3:000981969	0.0	W/981969-982040	AT3G03845.1  tRNA  gene_syn 60185.TRNA-TRP-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Trp (anticodon: CCA)  transcript_id AT3G03845.1  
At3g03847	chr3:000982192	0.0	C/982192-982587	AT3G03847.1  CDS  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT5G18060.1); Has 160 Blast hits to 159 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G03847.1p  transcript_id AT3G03847.1  protein_id AT3G03847.1p  transcript_id AT3G03847.1  
At3g03850	chr3:000983197	0.0	W/983197-983478	AT3G03850.1  CDS  gene_syn F20H23.11, F20H23_11  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive protein, putative  note auxin-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT3G03830.1); Has 552 Blast hits to 549 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 551; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G03850.1p  transcript_id AT3G03850.1  protein_id AT3G03850.1p  transcript_id AT3G03850.1  
At3g03852	chr3:000984099	0.0	W/984099-984170	AT3G03852.1  tRNA  gene_syn 60185.TRNA-TRP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Trp (anticodon: CCA)  transcript_id AT3G03852.1  
At3g03855	chr3:000986948	0.0	W/986948-990738	AT3G03855.1  pseudogenic_transcript  pseudo  gene_syn F20H23.10  function pseudogene of disease resistance protein  note expressed protein, similar to GB:AAC72977 (Arabidopsis thaliana)  
At3g03860	chr3:000992465	0.0	W/992465-992638,993024-993205,993631-993755,993894-994315	AT3G03860.1  CDS  gene_syn APR-like 5, ATAPRL5, F20H23.9, F20H23_9  gene ATAPRL5  function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5 -phosphosulfate reductase-like (APRL) group.  go_component endomembrane system|GO:0012505||IEA  go_process cell redox homeostasis|GO:0045454||IEA  product ATAPRL5 (APR-like 5)  note APR-like 5 (ATAPRL5); INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATAPRL7 (APR-like 7) (TAIR:AT5G18120.1); Has 198 Blast hits to 198 proteins in 50 species: Archae - 0; Bacteria - 21; Metazoa - 70; Fungi - 6; Plants - 92; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G03860.1p  transcript_id AT3G03860.1  protein_id AT3G03860.1p  transcript_id AT3G03860.1  
At3g03870	chr3:000995520	0.0	W/995520-996203,997064-997180	AT3G03870.2  CDS  gene_syn F20H23.8, F20H23_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18130.1); Has 28 Blast hits to 28 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G03870.2p  transcript_id AT3G03870.2  protein_id AT3G03870.2p  transcript_id AT3G03870.2  
At3g03870	chr3:000995520	0.0	W/995520-996224	AT3G03870.1  CDS  gene_syn F20H23.8, F20H23_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18130.2); Has 26 Blast hits to 26 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G03870.1p  transcript_id AT3G03870.1  protein_id AT3G03870.1p  transcript_id AT3G03870.1  
At3g03880	chr3:000998123	0.0	W/998123-998280,998380-998671,998778-998855,998976-999029	AT3G03880.1  CDS  gene_syn F20H23.7, F20H23_7  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55340.2); Has 125 Blast hits to 125 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G03880.1p  transcript_id AT3G03880.1  protein_id AT3G03880.1p  transcript_id AT3G03880.1  
At3g03890	chr3:001001835	0.0	C/1001835-1001996,1001436-1001498,1001242-1001328,1000990-1001088,1000807-1000902,1000663-1000728,1000464-1000554,1000324-1000391,1000178-1000243,999990-1000040,999837-999905	AT3G03890.2  CDS  gene_syn F20H23.6, F20H23_6  go_component chloroplast|GO:0009507|18431481|IDA  go_function FMN binding|GO:0010181||IEA  product FMN binding  note FMN binding; FUNCTIONS IN: FMN binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: FMN-binding split barrel (InterPro:IPR012349), Pyridoxamine 5&apos;-phosphate oxidase-related, FMN-binding core (InterPro:IPR011576), FMN-binding split barrel, related (InterPro:IPR009002), Haem iron utilisation protein, pyridoxamine 5&apos;-phosphate region (InterPro:IPR014599); BEST Arabidopsis thaliana protein match is: FMN binding (TAIR:AT3G21140.1); Has 586 Blast hits to 586 proteins in 211 species: Archae - 0; Bacteria - 356; Metazoa - 11; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).  protein_id AT3G03890.2p  transcript_id AT3G03890.2  protein_id AT3G03890.2p  transcript_id AT3G03890.2  
At3g03890	chr3:001001835	0.0	C/1001835-1001996,1001436-1001498,1001242-1001328,1000990-1001088,1000807-1000902,1000663-1000728,1000464-1000554,1000324-1000391,1000178-1000243,999990-1000040,999841-999905,999667-999718	AT3G03890.1  CDS  gene_syn F20H23.6, F20H23_6  go_component chloroplast|GO:0009507|18431481|IDA  go_function FMN binding|GO:0010181||IEA  product FMN binding  note FMN binding; FUNCTIONS IN: FMN binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: FMN-binding split barrel (InterPro:IPR012349), Pyridoxamine 5&apos;-phosphate oxidase-related, FMN-binding core (InterPro:IPR011576), FMN-binding split barrel, related (InterPro:IPR009002), Haem iron utilisation protein, pyridoxamine 5&apos;-phosphate region (InterPro:IPR014599); BEST Arabidopsis thaliana protein match is: FMN binding (TAIR:AT3G21140.1); Has 606 Blast hits to 606 proteins in 221 species: Archae - 0; Bacteria - 374; Metazoa - 11; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).  protein_id AT3G03890.1p  transcript_id AT3G03890.1  protein_id AT3G03890.1p  transcript_id AT3G03890.1  
At3g03900	chr3:001004148	0.0	C/1004148-1004271,1003888-1004037,1003516-1003634,1003338-1003422,1003181-1003227,1002975-1003076	AT3G03900.1  CDS  gene_syn F20H23.5, F20H23_5  go_process sulfate assimilation|GO:0000103||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||IEA  go_function transferase activity, transferring phosphorus-containing groups|GO:0016772||IEA  go_component cellular_component|GO:0005575||ND  go_process sulfate assimilation|GO:0000103||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  go_function transferase activity, transferring phosphorus-containing groups|GO:0016772||ISS  product adenylylsulfate kinase, putative  note adenylylsulfate kinase, putative; FUNCTIONS IN: transferase activity, transferring phosphorus-containing groups, kinase activity, ATP binding; INVOLVED IN: sulfate assimilation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Adenylylsulphate kinase, C-terminal (InterPro:IPR002891); BEST Arabidopsis thaliana protein match is: APK (APS KINASE); ATP binding / adenylylsulfate kinase/ kinase/ transferase, transferring phosphorus-containing groups (TAIR:AT2G14750.1); Has 3625 Blast hits to 3625 proteins in 925 species: Archae - 35; Bacteria - 1797; Metazoa - 219; Fungi - 201; Plants - 69; Viruses - 2; Other Eukaryotes - 1302 (source: NCBI BLink).  protein_id AT3G03900.1p  transcript_id AT3G03900.1  protein_id AT3G03900.1p  transcript_id AT3G03900.1  
At3g03910	chr3:001006913	0.0	W/1006913-1007020,1007119-1007232,1007317-1007538,1007621-1007695,1007799-1007915,1007990-1008240,1008325-1008400,1008487-1008573,1008661-1008846	AT3G03910.1  CDS  gene_syn F20H23.4, GDH3, GLUTAMATE DEHYDROGENASE 3  gene GDH3  function GDH3 encodes a member of the glutamate dehydrogenease family. Its expression is upregulated in response to cytokinin and it may play a role in the control of nitrogen metabolism in leaf development.  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor|GO:0016639||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process regulation of nitrogen compound metabolic process|GO:0051171|19048287|IEP  go_function oxidoreductase activity|GO:0016491||ISS  product GDH3 (GLUTAMATE DEHYDROGENASE 3); binding / catalytic/ oxidoreductase/ oxidoreductase, acting on the CH-NH2 group of donors, NAD or NADP as acceptor  note GLUTAMATE DEHYDROGENASE 3 (GDH3); FUNCTIONS IN: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor, oxidoreductase activity, binding, catalytic activity; INVOLVED IN: regulation of nitrogen compound metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Glutamate/phenylalanine/leucine/valine dehydrogenase (InterPro:IPR006095), Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal (InterPro:IPR006096), Glutamate dehydrogenase (InterPro:IPR014362), NAD(P)-binding (InterPro:IPR016040), Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation region (InterPro:IPR006097); BEST Arabidopsis thaliana protein match is: GDH1 (GLUTAMATE DEHYDROGENASE 1); ATP binding / glutamate dehydrogenase [NAD(P)+]/ oxidoreductase (TAIR:AT5G18170.1); Has 5749 Blast hits to 5744 proteins in 1254 species: Archae - 188; Bacteria - 2754; Metazoa - 311; Fungi - 152; Plants - 250; Viruses - 0; Other Eukaryotes - 2094 (source: NCBI BLink).  protein_id AT3G03910.1p  transcript_id AT3G03910.1  protein_id AT3G03910.1p  transcript_id AT3G03910.1  
At3g03920	chr3:001010202	0.0	C/1010202-1010379,1009676-1009824,1009483-1009598,1009123-1009288	AT3G03920.1  CDS  gene_syn F20H23.3, F20H23_3  go_component nucleolus|GO:0005730|15496452|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process rRNA processing|GO:0006364||IEA  go_function rRNA binding|GO:0019843||IEA  go_function RNA binding|GO:0003723||ISS  product Gar1 RNA-binding region family protein  note Gar1 RNA-binding region family protein; FUNCTIONS IN: RNA binding, rRNA binding; INVOLVED IN: rRNA processing; LOCATED IN: chloroplast thylakoid membrane, nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gar1 protein RNA-binding region (InterPro:IPR007504); BEST Arabidopsis thaliana protein match is: Gar1 RNA-binding region family protein (TAIR:AT5G18180.1); Has 26246 Blast hits to 8264 proteins in 726 species: Archae - 15; Bacteria - 4613; Metazoa - 10704; Fungi - 2027; Plants - 5901; Viruses - 362; Other Eukaryotes - 2624 (source: NCBI BLink).  protein_id AT3G03920.1p  transcript_id AT3G03920.1  protein_id AT3G03920.1p  transcript_id AT3G03920.1  
At3g03930	chr3:001012746	0.0	C/1012746-1012810,1012529-1012657,1012269-1012443,1012088-1012178,1011853-1012010,1011586-1011774,1011438-1011494	AT3G03930.1  CDS  gene_syn F20H23.2, F20H23_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product protein kinase-related  note protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G03940.1); Has 228 Blast hits to 214 proteins in 19 species: Archae - 0; Bacteria - 18; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G03930.1p  transcript_id AT3G03930.1  protein_id AT3G03930.1p  transcript_id AT3G03930.1  
At3g03940	chr3:001017852	0.0	C/1017852-1018244,1017480-1017605,1017318-1017391,1017149-1017218,1017013-1017068,1016859-1016930,1016635-1016729,1016500-1016566,1016287-1016416,1015986-1016204,1015772-1015902,1015301-1015475,1015120-1015210,1014865-1015022,1014581-1014769,1014412-1014471	AT3G03940.1  CDS  gene_syn T11I18.5, T11I18_5  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G18190.2); Has 11624 Blast hits to 11566 proteins in 817 species: Archae - 11; Bacteria - 2845; Metazoa - 4202; Fungi - 1012; Plants - 1120; Viruses - 215; Other Eukaryotes - 2219 (source: NCBI BLink).  protein_id AT3G03940.1p  transcript_id AT3G03940.1  protein_id AT3G03940.1p  transcript_id AT3G03940.1  
At3g03950	chr3:001021502	0.0	W/1021502-1021553,1021911-1021981,1022153-1022374,1022523-1023071,1023156-1023368,1023490-1023627,1023726-1023767	AT3G03950.3  CDS  gene_syn ECT1, T11I18.6, T11I18_6  gene ECT1  function Physically interacts with CIPK1. Located in the nucleus.  go_component nucleus|GO:0005634|16113215|IDA  go_process calcium-mediated signaling|GO:0019722|16113215|TAS  go_function protein binding|GO:0005515|16113215|IPI  product protein binding  note ECT1; FUNCTIONS IN: protein binding; INVOLVED IN: calcium-mediated signaling; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: YT521-B-like protein (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: ECT3 (TAIR:AT5G61020.2); Has 691 Blast hits to 690 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 345; Fungi - 82; Plants - 188; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT3G03950.3p  transcript_id AT3G03950.3  protein_id AT3G03950.3p  transcript_id AT3G03950.3  
At3g03950	chr3:001021502	0.0	W/1021502-1021553,1021911-1021981,1022165-1022374,1022523-1023071,1023156-1023368,1023490-1023627,1023726-1023767	AT3G03950.2  CDS  gene_syn ECT1, T11I18.6, T11I18_6  gene ECT1  function Physically interacts with CIPK1. Located in the nucleus.  go_component nucleus|GO:0005634|16113215|IDA  go_process calcium-mediated signaling|GO:0019722|16113215|TAS  go_function protein binding|GO:0005515|16113215|IPI  product protein binding  note ECT1; FUNCTIONS IN: protein binding; INVOLVED IN: calcium-mediated signaling; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: YT521-B-like protein (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: ECT3 (TAIR:AT5G61020.2); Has 690 Blast hits to 689 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 344; Fungi - 82; Plants - 188; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT3G03950.2p  transcript_id AT3G03950.2  protein_id AT3G03950.2p  transcript_id AT3G03950.2  
At3g03950	chr3:001021502	0.0	W/1021502-1021553,1021920-1021981,1022153-1022374,1022523-1023071,1023156-1023368,1023490-1023627,1023726-1023767	AT3G03950.1  CDS  gene_syn ECT1, T11I18.6, T11I18_6  gene ECT1  function Physically interacts with CIPK1. Located in the nucleus.  go_component nucleus|GO:0005634|16113215|IDA  go_process calcium-mediated signaling|GO:0019722|16113215|TAS  go_function protein binding|GO:0005515|16113215|IPI  product protein binding  note ECT1; FUNCTIONS IN: protein binding; INVOLVED IN: calcium-mediated signaling; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: YT521-B-like protein (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: ECT3 (TAIR:AT5G61020.2); Has 691 Blast hits to 690 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 345; Fungi - 82; Plants - 188; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT3G03950.1p  transcript_id AT3G03950.1  protein_id AT3G03950.1p  transcript_id AT3G03950.1  
At3g03960	chr3:001024432	0.0	W/1024432-1024582,1024795-1025057,1025146-1025292,1025403-1025564,1025720-1025797,1025916-1026049,1026131-1026203,1026285-1026362,1026449-1026571,1026653-1026747,1026860-1027069,1027237-1027294,1027527-1027604	AT3G03960.1  CDS  gene_syn T11I18.7, T11I18_7  go_component membrane|GO:0016020|17432890|IDA  go_process protein folding|GO:0006457||IEA  go_process cellular protein metabolic process|GO:0044267||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function unfolded protein binding|GO:0051082||IEA  product chaperonin, putative  note chaperonin, putative; FUNCTIONS IN: unfolded protein binding, protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin TCP-1, conserved site (InterPro:IPR002194), T-complex protein 1, theta subunit (InterPro:IPR012721); BEST Arabidopsis thaliana protein match is: chaperonin, putative (TAIR:AT3G18190.1); Has 10959 Blast hits to 10902 proteins in 2114 species: Archae - 388; Bacteria - 4701; Metazoa - 1599; Fungi - 906; Plants - 376; Viruses - 0; Other Eukaryotes - 2989 (source: NCBI BLink).  protein_id AT3G03960.1p  transcript_id AT3G03960.1  protein_id AT3G03960.1p  transcript_id AT3G03960.1  
At3g03970	chr3:001028737	0.0	C/1028737-1029891,1028144-1028653	AT3G03970.1  CDS  gene_syn T11I18.8, T11I18_8  go_process spliceosome assembly|GO:0000245||IEA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), Survival motor neuron interacting protein 1 (InterPro:IPR007022); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT1G54385.2); Has 49 Blast hits to 49 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G03970.1p  transcript_id AT3G03970.1  protein_id AT3G03970.1p  transcript_id AT3G03970.1  
At3g03970	chr3:001028737	0.0	C/1028737-1029891,1028144-1028653	AT3G03970.2  CDS  gene_syn T11I18.8, T11I18_8  go_process spliceosome assembly|GO:0000245||IEA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), Survival motor neuron interacting protein 1 (InterPro:IPR007022); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT1G54385.2); Has 49 Blast hits to 49 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G03970.2p  transcript_id AT3G03970.2  protein_id AT3G03970.2p  transcript_id AT3G03970.2  
At3g03970	chr3:001028737	0.0	C/1028737-1029891,1028144-1028653	AT3G03970.3  CDS  gene_syn T11I18.8, T11I18_8  go_process spliceosome assembly|GO:0000245||IEA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), Survival motor neuron interacting protein 1 (InterPro:IPR007022); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT1G54385.2); Has 49 Blast hits to 49 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G03970.3p  transcript_id AT3G03970.3  protein_id AT3G03970.3p  transcript_id AT3G03970.3  
At3g03980	chr3:001031786	0.0	W/1031786-1032189,1032673-1033081	AT3G03980.1  CDS  gene_syn T11I18.9, T11I18_9  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT3G04000.1); Has 84398 Blast hits to 84231 proteins in 2301 species: Archae - 473; Bacteria - 46844; Metazoa - 5449; Fungi - 4315; Plants - 1667; Viruses - 12; Other Eukaryotes - 25638 (source: NCBI BLink).  protein_id AT3G03980.1p  transcript_id AT3G03980.1  protein_id AT3G03980.1p  transcript_id AT3G03980.1  
At3g03990	chr3:001033788	0.0	W/1033788-1034591	AT3G03990.1  CDS  gene_syn T11I18.10, T11I18_10  go_function catalytic activity|GO:0003824||ISS  product esterase/lipase/thioesterase family protein  note esterase/lipase/thioesterase family protein; FUNCTIONS IN: catalytic activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT4G37470.1); Has 4484 Blast hits to 4484 proteins in 834 species: Archae - 32; Bacteria - 3257; Metazoa - 82; Fungi - 35; Plants - 141; Viruses - 0; Other Eukaryotes - 937 (source: NCBI BLink).  protein_id AT3G03990.1p  transcript_id AT3G03990.1  protein_id AT3G03990.1p  transcript_id AT3G03990.1  
At3g04000	chr3:001035500	0.0	W/1035500-1035906,1036024-1036435	AT3G04000.1  CDS  gene_syn T11I18.11, T11I18_11  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process metabolic process|GO:0008152||ISS  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT3G03980.1); Has 80385 Blast hits to 80229 proteins in 2206 species: Archae - 472; Bacteria - 44543; Metazoa - 4965; Fungi - 3993; Plants - 1634; Viruses - 17; Other Eukaryotes - 24761 (source: NCBI BLink).  protein_id AT3G04000.1p  transcript_id AT3G04000.1  protein_id AT3G04000.1p  transcript_id AT3G04000.1  
At3g04010	chr3:001038905	0.0	C/1038905-1039263,1036879-1037995	AT3G04010.1  CDS  gene_syn T11I18.12, T11I18_12  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT5G18220.1); Has 1712 Blast hits to 1664 proteins in 139 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 69; Plants - 1633; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT3G04010.1p  transcript_id AT3G04010.1  protein_id AT3G04010.1p  transcript_id AT3G04010.1  
At3g04020	chr3:001040548	0.0	W/1040548-1040598,1040694-1040755,1040874-1040958,1041065-1041151,1041255-1041308,1041401-1041588,1041813-1041892,1041979-1042079,1042171-1042377	AT3G04020.1  CDS  gene_syn T11I18.13, T11I18_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 12 Blast hits to 12 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G04020.1p  transcript_id AT3G04020.1  protein_id AT3G04020.1p  transcript_id AT3G04020.1  
At3g04030	chr3:001044367	0.0	C/1044367-1044574,1044198-1044271,1043922-1044064,1043772-1043841,1042920-1043606	AT3G04030.2  CDS  gene_syn T11I18.14, T11I18_14  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: MYR1 (MYb-related protein 1); transcription factor (TAIR:AT5G18240.4); Has 908 Blast hits to 899 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 894; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT3G04030.2p  transcript_id AT3G04030.2  protein_id AT3G04030.2p  transcript_id AT3G04030.2  
At3g04030	chr3:001044367	0.0	C/1044367-1044574,1044198-1044274,1043922-1044064,1043772-1043841,1042920-1043588	AT3G04030.1  CDS  gene_syn T11I18.14, T11I18_14  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: MYR1 (MYb-related protein 1); transcription factor (TAIR:AT5G18240.3); Has 901 Blast hits to 898 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 890; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT3G04030.1p  transcript_id AT3G04030.1  protein_id AT3G04030.1p  transcript_id AT3G04030.1  
At3g04030	chr3:001044367	0.0	C/1044367-1044574,1044198-1044274,1043922-1044064,1043772-1043841,1042920-1043606	AT3G04030.3  CDS  gene_syn T11I18.14, T11I18_14  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: MYR1 (MYb-related protein 1); transcription factor (TAIR:AT5G18240.4); Has 917 Blast hits to 908 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 901; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT3G04030.3p  transcript_id AT3G04030.3  protein_id AT3G04030.3p  transcript_id AT3G04030.3  
At3g04040	chr3:001047754	0.0	W/1047754-1047834,1047933-1047983,1048163-1048214,1048543-1048601,1048713-1048758,1048899-1049026	AT3G04040.1  CDS  gene_syn T11I18.15, T11I18_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18250.1); Has 32 Blast hits to 32 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G04040.1p  transcript_id AT3G04040.1  protein_id AT3G04040.1p  transcript_id AT3G04040.1  
At3g04050	chr3:001049795	0.0	W/1049795-1050040,1050148-1050609,1050698-1051522	AT3G04050.1  CDS  gene_syn T11I18.16, T11I18_16  go_process glycolysis|GO:0006096||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function catalytic activity|GO:0003824||IEA  go_function pyruvate kinase activity|GO:0004743||IEA  go_function potassium ion binding|GO:0030955||IEA  go_component cellular_component|GO:0005575||ND  go_process glycolysis|GO:0006096||ISS  go_function pyruvate kinase activity|GO:0004743||ISS  product pyruvate kinase, putative  note pyruvate kinase, putative; FUNCTIONS IN: pyruvate kinase activity, magnesium ion binding, potassium ion binding, catalytic activity; INVOLVED IN: glycolysis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pyruvate kinase, C-terminal-like (InterPro:IPR015795), Pyruvate kinase, active site (InterPro:IPR018209), Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), Pyruvate kinase, alpha/beta (InterPro:IPR015794), Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate kinase (InterPro:IPR001697), Pyruvate kinase, barrel (InterPro:IPR015793); BEST Arabidopsis thaliana protein match is: pyruvate kinase, putative (TAIR:AT3G55650.1); Has 6881 Blast hits to 6799 proteins in 1518 species: Archae - 99; Bacteria - 3244; Metazoa - 491; Fungi - 168; Plants - 287; Viruses - 0; Other Eukaryotes - 2592 (source: NCBI BLink).  protein_id AT3G04050.1p  transcript_id AT3G04050.1  protein_id AT3G04050.1p  transcript_id AT3G04050.1  
At3g04060	chr3:001054754	0.0	C/1054754-1054952,1054389-1054669,1053625-1054161	AT3G04060.1  CDS  gene_syn Arabidopsis NAC domain containing protein 46, T11I18.17, T11I18_17, anac046  gene anac046  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac046 (Arabidopsis NAC domain containing protein 46); transcription factor  note Arabidopsis NAC domain containing protein 46 (anac046); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC087; transcription factor (TAIR:AT5G18270.1); Has 1632 Blast hits to 1630 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1632; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G04060.1p  transcript_id AT3G04060.1  protein_id AT3G04060.1p  transcript_id AT3G04060.1  
At3g04070	chr3:001062808	0.0	C/1062808-1062976,1062361-1062713,1061573-1062130	AT3G04070.1  CDS  gene_syn Arabidopsis NAC domain containing protein 47, T11I18.18, T11I18_18, anac047  gene anac047  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac047 (Arabidopsis NAC domain containing protein 47); transcription factor  note Arabidopsis NAC domain containing protein 47 (anac047); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAM (NO APICAL MERISTEM); transcription factor (TAIR:AT1G52880.1); Has 1636 Blast hits to 1633 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1636; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G04070.1p  transcript_id AT3G04070.1  protein_id AT3G04070.1p  transcript_id AT3G04070.1  
At3g04070	chr3:001062808	0.0	C/1062808-1062976,1062409-1062713,1061573-1062130	AT3G04070.2  CDS  gene_syn Arabidopsis NAC domain containing protein 47, T11I18.18, T11I18_18, anac047  gene anac047  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac047 (Arabidopsis NAC domain containing protein 47); transcription factor  note Arabidopsis NAC domain containing protein 47 (anac047); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAM (NO APICAL MERISTEM); transcription factor (TAIR:AT1G52880.1); Has 1647 Blast hits to 1644 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1647; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G04070.2p  transcript_id AT3G04070.2  protein_id AT3G04070.2p  transcript_id AT3G04070.2  
At3g04080	chr3:001070600	0.0	C/1070600-1070917,1070048-1070176,1069890-1069946,1069718-1069810,1069330-1069535,1069108-1069199,1068786-1069003,1068486-1068675,1068068-1068180	AT3G04080.1  CDS  gene_syn APYRASE 1, ATAPY1, T6K12.30, T6K12_30  gene ATAPY1  function Encodes an enzyme with ATPase and ADPase activity (an apyrase) that when mutated in combination with ATAPY2 causes a complete inhibition of pollen germination.  go_process pollen germination|GO:0009846|12692323|IGI  go_function nucleotide diphosphatase activity|GO:0004551||IDA  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function ATPase activity|GO:0016887||IDA  product ATAPY1 (APYRASE 1); ATPase/ calmodulin binding / nucleotide diphosphatase  note APYRASE 1 (ATAPY1); FUNCTIONS IN: nucleotide diphosphatase activity, calmodulin binding, ATPase activity; INVOLVED IN: pollen germination; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407); BEST Arabidopsis thaliana protein match is: ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2); ATPase/ nucleotide diphosphatase (TAIR:AT5G18280.1); Has 1085 Blast hits to 1079 proteins in 167 species: Archae - 0; Bacteria - 20; Metazoa - 524; Fungi - 210; Plants - 222; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).  protein_id AT3G04080.1p  transcript_id AT3G04080.1  protein_id AT3G04080.1p  transcript_id AT3G04080.1  
At3g04090	chr3:001073741	0.0	C/1073741-1074031,1072706-1072978,1072340-1072498	AT3G04090.1  CDS  gene_syn SIP1;1, SIP1A, SMALL AND BASIC INTRINSIC PROTEIN 1A, T6K12.29, T6K12_29  gene SIP1A  function Belongs to a family of plant aquaporins. Similar to yeast and radish aquaporins. Located on ER.  go_process transport|GO:0006810||IEA  go_component endoplasmic reticulum|GO:0005783|16223486|IDA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_function water channel activity|GO:0015250|16223486|IDA  go_function water channel activity|GO:0015250|16223486|IGI  product SIP1A (SMALL AND BASIC INTRINSIC PROTEIN 1A); water channel  note SMALL AND BASIC INTRINSIC PROTEIN 1A (SIP1A); FUNCTIONS IN: water channel activity; INVOLVED IN: transport; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: SIP1;2; water channel (TAIR:AT5G18290.1); Has 1845 Blast hits to 1845 proteins in 263 species: Archae - 14; Bacteria - 45; Metazoa - 523; Fungi - 33; Plants - 1144; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT3G04090.1p  transcript_id AT3G04090.1  protein_id AT3G04090.1p  transcript_id AT3G04090.1  
At3g04100	chr3:001075299	0.0	W/1075299-1075922	AT3G04100.1  CDS  gene_syn AGL57, T6K12.28, T6K12_28  gene AGL57  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL57; DNA binding / transcription factor  note AGL57; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL64 (AGAMOUS-LIKE 64); transcription factor (TAIR:AT1G29962.1); Has 4051 Blast hits to 4051 proteins in 521 species: Archae - 0; Bacteria - 0; Metazoa - 552; Fungi - 199; Plants - 3257; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT3G04100.1p  transcript_id AT3G04100.1  protein_id AT3G04100.1p  transcript_id AT3G04100.1  
At3g04110	chr3:001077361	0.0	W/1077361-1077616,1077800-1079007,1079096-1079408,1079498-1079832,1079922-1080236	AT3G04110.1  CDS  gene_syn ATGLR1.1, GLR1, GLR1.1, GLUTAMATE RECEPTOR 1, GLUTAMATE RECEPTOR 1.1, T6K12.27, T6K12_27  gene GLR1.1  function putative glutamate receptor (GLR1.1). Contains a functional cation - permeable pore domain. Involved in cellular cation homeostasis.  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process cellular calcium ion homeostasis|GO:0006874|11379626|NAS  go_process response to light stimulus|GO:0009416|9823891|IMP  go_process cellular cation homeostasis|GO:0030003|18625242|IDA  go_function intracellular ligand-gated ion channel activity|GO:0005217||ISS  go_function cation channel activity|GO:0005261|18625242|IDA  product GLR1.1 (GLUTAMATE RECEPTOR 1.1); cation channel/ intracellular ligand-gated ion channel  note GLUTAMATE RECEPTOR 1.1 (GLR1.1); FUNCTIONS IN: intracellular ligand-gated ion channel activity, cation channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus, cellular cation homeostasis; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: ATGLR1.2; intracellular ligand-gated ion channel (TAIR:AT5G48400.2); Has 2586 Blast hits to 2534 proteins in 249 species: Archae - 10; Bacteria - 329; Metazoa - 1863; Fungi - 0; Plants - 300; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT3G04110.1p  transcript_id AT3G04110.1  protein_id AT3G04110.1p  transcript_id AT3G04110.1  
At3g04120	chr3:001081077	0.0	W/1081077-1081080,1081186-1081215,1081305-1081405,1081769-1081884,1081979-1082078,1082189-1082335,1082431-1082491,1082585-1082825,1082915-1083131	AT3G04120.1  CDS  gene_syn GAPC, GAPC-1, GAPC1, GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT, GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1, T6K12.26, T6K12_26  gene GAPC1  function encodes cytosolic GADPH (C subunit) involved in the glycolytic pathway but also interacts with H2O2 potentially placing it in a signalling cascade induced by ROS.  go_component nucleus|GO:0005634|14617066|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial envelope|GO:0005740|12953116|IDA  go_component cytosol|GO:0005829|15533878|TAS  go_process gluconeogenesis|GO:0006094|15533878|TAS  go_process glycolysis|GO:0006096|15533878|TAS  go_process glycolysis|GO:0006096|18820081|IDA  go_process glycolysis|GO:0006096|3055302|TAS  go_process glycolysis|GO:0006096||ISS  go_process response to stress|GO:0006950|8278495|IEP  go_process response to oxidative stress|GO:0006979|12492832|IDA  go_process response to oxidative stress|GO:0006979|8278495|IEP  go_process response to heat|GO:0009408|8278495|IEP  go_process response to sucrose stimulus|GO:0009744|8278495|IEP  go_process fruit development|GO:0010154|18820081|IMP  go_process response to hydrogen peroxide|GO:0042542|16289945|IDA  go_process seed development|GO:0048316|18820081|IMP  go_function glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity|GO:0004365|3055302|TAS  go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943|18820081|IDA  go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943||ISS  product GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1); glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase  note GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1 (GAPC1); FUNCTIONS IN: glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, glyceraldehyde-3-phosphate dehydrogenase activity; INVOLVED IN: in 11 processes; LOCATED IN: in 8 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase (InterPro:IPR000173), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2); NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase (TAIR:AT1G13440.1); Has 17670 Blast hits to 17659 proteins in 4042 species: Archae - 47; Bacteria - 6652; Metazoa - 1441; Fungi - 1939; Plants - 2582; Viruses - 0; Other Eukaryotes - 5009 (source: NCBI BLink).  protein_id AT3G04120.1p  transcript_id AT3G04120.1  protein_id AT3G04120.1p  transcript_id AT3G04120.1  
At3g04130	chr3:001084136	0.0	W/1084136-1085662	AT3G04130.1  CDS  gene_syn T6K12.25, T6K12_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G22670.1); Has 14751 Blast hits to 5328 proteins in 171 species: Archae - 2; Bacteria - 18; Metazoa - 312; Fungi - 238; Plants - 13610; Viruses - 0; Other Eukaryotes - 571 (source: NCBI BLink).  protein_id AT3G04130.1p  transcript_id AT3G04130.1  protein_id AT3G04130.1p  transcript_id AT3G04130.1  
At3g04130	chr3:001084136	0.0	W/1084136-1085662	AT3G04130.2  CDS  gene_syn T6K12.25, T6K12_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G22670.1); Has 14751 Blast hits to 5328 proteins in 171 species: Archae - 2; Bacteria - 18; Metazoa - 312; Fungi - 238; Plants - 13610; Viruses - 0; Other Eukaryotes - 571 (source: NCBI BLink).  protein_id AT3G04130.2p  transcript_id AT3G04130.2  protein_id AT3G04130.2p  transcript_id AT3G04130.2  
At3g04140	chr3:001087063	0.0	W/1087063-1087779,1087853-1089106	AT3G04140.1  CDS  gene_syn T6K12.24, T6K12_24  go_component cellular_component|GO:0005575||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT3G01750.1); Has 19605 Blast hits to 10581 proteins in 413 species: Archae - 27; Bacteria - 1211; Metazoa - 10282; Fungi - 1396; Plants - 1102; Viruses - 72; Other Eukaryotes - 5515 (source: NCBI BLink).  protein_id AT3G04140.1p  transcript_id AT3G04140.1  protein_id AT3G04140.1p  transcript_id AT3G04140.1  
At3g04150	chr3:001090300	0.0	C/1090300-1090426,1089451-1090013	AT3G04150.1  CDS  gene_syn T6K12.23, T6K12_23  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process biological_process|GO:0008150||ND  product germin-like protein, putative  note germin-like protein, putative; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: germin-like protein, putative (TAIR:AT3G04190.1); Has 832 Blast hits to 831 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 12; Plants - 813; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT3G04150.1p  transcript_id AT3G04150.1  protein_id AT3G04150.1p  transcript_id AT3G04150.1  
At3g04160	chr3:001092921	0.0	C/1092921-1094296,1092682-1092796,1092466-1092573,1091647-1092186	AT3G04160.1  CDS  gene_syn T6K12.22, T6K12_22  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 1599 Blast hits to 1235 proteins in 157 species: Archae - 0; Bacteria - 45; Metazoa - 652; Fungi - 193; Plants - 164; Viruses - 0; Other Eukaryotes - 545 (source: NCBI BLink).  protein_id AT3G04160.1p  transcript_id AT3G04160.1  protein_id AT3G04160.1p  transcript_id AT3G04160.1  
At3g04170	chr3:001095490	0.0	C/1095490-1095616,1094765-1095321	AT3G04170.1  CDS  gene_syn T6K12.21, T6K12_21  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process biological_process|GO:0008150||ND  product germin-like protein, putative  note germin-like protein, putative; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: germin-like protein, putative (TAIR:AT3G04150.1); Has 856 Blast hits to 854 proteins in 75 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 14; Plants - 825; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT3G04170.1p  transcript_id AT3G04170.1  protein_id AT3G04170.1p  transcript_id AT3G04170.1  
At3g04180	chr3:001098189	0.0	C/1098189-1098315,1097518-1098059	AT3G04180.1  CDS  gene_syn T6K12.20, T6K12_20  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process biological_process|GO:0008150||ND  product germin-like protein, putative  note germin-like protein, putative; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: germin-like protein, putative (TAIR:AT3G04190.1); Has 846 Blast hits to 845 proteins in 74 species: Archae - 2; Bacteria - 4; Metazoa - 0; Fungi - 18; Plants - 815; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT3G04180.1p  transcript_id AT3G04180.1  protein_id AT3G04180.1p  transcript_id AT3G04180.1  
At3g04181	chr3:001098929	0.0	W/1098929-1099073,1099297-1099448	AT3G04181.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G04181.1p  transcript_id AT3G04181.1  protein_id AT3G04181.1p  transcript_id AT3G04181.1  
At3g04184	chr3:001100085	0.0	C/1100085-1100246	AT3G04184.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G04184.1p  transcript_id AT3G04184.1  protein_id AT3G04184.1p  transcript_id AT3G04184.1  
At3g04190	chr3:001102621	0.0	C/1102621-1102747,1101960-1102501	AT3G04190.1  CDS  gene_syn T6K12.19, T6K12_19  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process biological_process|GO:0008150||ND  product germin-like protein, putative  note germin-like protein, putative; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: germin-like protein, putative (TAIR:AT3G04180.1); Has 838 Blast hits to 837 proteins in 72 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 18; Plants - 811; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT3G04190.1p  transcript_id AT3G04190.1  protein_id AT3G04190.1p  transcript_id AT3G04190.1  
At3g04200	chr3:001104444	0.0	C/1104444-1104573,1103745-1104298	AT3G04200.1  CDS  gene_syn T6K12.18, T6K12_18  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process biological_process|GO:0008150||ND  product germin-like protein, putative  note germin-like protein, putative; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: stem, male gametophyte, root, leaf; EXPRESSED DURING: L mature pollen stage, LP.06 six leaves visible, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: germin-like protein, putative (TAIR:AT3G05950.1); Has 863 Blast hits to 862 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 30; Plants - 826; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT3G04200.1p  transcript_id AT3G04200.1  protein_id AT3G04200.1p  transcript_id AT3G04200.1  
At3g04210	chr3:001107377	0.0	C/1107377-1108005,1106243-1107209	AT3G04210.1  CDS  gene_syn T6K12.17, T6K12_17  go_component endomembrane system|GO:0012505||IEA  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS class), putative  note disease resistance protein (TIR-NBS class), putative; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane, endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT3G04220.1); Has 5085 Blast hits to 4996 proteins in 186 species: Archae - 0; Bacteria - 29; Metazoa - 11; Fungi - 0; Plants - 5040; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G04210.1p  transcript_id AT3G04210.1  protein_id AT3G04210.1p  transcript_id AT3G04210.1  
At3g04220	chr3:001111569	0.0	C/1111569-1112188,1110293-1111400,1109865-1110218,1109118-1109726	AT3G04220.1  CDS  gene_syn T6K12.16, T6K12_16  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G11250.1); Has 38279 Blast hits to 17969 proteins in 653 species: Archae - 26; Bacteria - 1713; Metazoa - 4578; Fungi - 170; Plants - 29583; Viruses - 16; Other Eukaryotes - 2193 (source: NCBI BLink).  protein_id AT3G04220.1p  transcript_id AT3G04220.1  protein_id AT3G04220.1p  transcript_id AT3G04220.1  
At3g04230	chr3:001113169	0.0	C/1113169-1113609	AT3G04230.1  CDS  gene_syn T6K12.15, T6K12_15  go_component nucleolus|GO:0005730|15496452|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S16 (RPS16B)  note 40S ribosomal protein S16 (RPS16B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S9 (InterPro:IPR000754), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S16 (RPS16C) (TAIR:AT5G18380.1); Has 4667 Blast hits to 4667 proteins in 1442 species: Archae - 152; Bacteria - 2454; Metazoa - 279; Fungi - 125; Plants - 110; Viruses - 0; Other Eukaryotes - 1547 (source: NCBI BLink).  protein_id AT3G04230.1p  transcript_id AT3G04230.1  protein_id AT3G04230.1p  transcript_id AT3G04230.1  
At3g04240	chr3:001120572	0.0	C/1120572-1120722,1120060-1120205,1119870-1119968,1119738-1119788,1119501-1119617,1119331-1119387,1118806-1118925,1118627-1118689,1118455-1118533,1118243-1118352,1118095-1118148,1117955-1118022,1117775-1117877,1117480-1117682,1116988-1117084,1116806-1116877,1116642-1116718,1116341-1116542,1115904-1116071,1115694-1115804,1115503-1115589,1115280-1115407,1115057-1115139,1114859-1114964,1114594-1114740,1114380-1114500,1114187-1114300	AT3G04240.1  CDS  gene_syn SEC, T6K12.14, T6K12_14, secret agent  gene SEC  function Has O-linked N-acetyl glucosamine transferase activity. Similar to Arabidopsis SPY gene.  go_process protein amino acid O-linked glycosylation|GO:0006493|12136030|IDA  go_process protein amino acid O-linked glycosylation|GO:0006493||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757|12136030|IDA  go_function transferase activity, transferring glycosyl groups|GO:0016757|12136030|ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product SEC (secret agent); transferase, transferring glycosyl groups  note secret agent (SEC); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid O-linked glycosylation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: SPY (SPINDLY); protein N-acetylglucosaminyltransferase/ protein binding / transferase, transferring glycosyl groups (TAIR:AT3G11540.1); Has 87939 Blast hits to 26688 proteins in 1410 species: Archae - 2358; Bacteria - 34660; Metazoa - 15318; Fungi - 3123; Plants - 2010; Viruses - 0; Other Eukaryotes - 30470 (source: NCBI BLink).  protein_id AT3G04240.1p  transcript_id AT3G04240.1  protein_id AT3G04240.1p  transcript_id AT3G04240.1  
At3g04250	chr3:001121950	0.0	W/1121950-1122828	AT3G04250.1  CDS  gene_syn T6K12.13, T6K12_13  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G38590.1); Has 394 Blast hits to 382 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 393; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G04250.1p  transcript_id AT3G04250.1  protein_id AT3G04250.1p  transcript_id AT3G04250.1  
At3g04260	chr3:001127135	0.0	C/1127135-1127515,1126710-1126881,1126379-1126596,1126204-1126267,1126037-1126109,1125878-1125955,1125614-1125771,1125232-1125400,1124597-1125059,1124082-1124507,1123765-1123974,1123551-1123684,1123231-1123426	AT3G04260.1  CDS  gene_syn PLASTID TRANSCRIPTIONALLY ACTIVE3, PTAC3, T6K12.12, T6K12_12  gene PTAC3  go_component nucleoid|GO:0009295|16326926|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_component nucleus|GO:0005634||ISS  go_component plastid chromosome|GO:0009508|16326926|IDA  go_function DNA binding|GO:0003677||ISS  product PTAC3 (PLASTID TRANSCRIPTIONALLY ACTIVE3); DNA binding / nucleic acid binding  note PLASTID TRANSCRIPTIONALLY ACTIVE3 (PTAC3); FUNCTIONS IN: DNA binding, nucleic acid binding; LOCATED IN: plastid chromosome, nucleus, chloroplast, nucleoid, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G31400.1); Has 10915 Blast hits to 7140 proteins in 338 species: Archae - 17; Bacteria - 223; Metazoa - 4524; Fungi - 999; Plants - 2168; Viruses - 215; Other Eukaryotes - 2769 (source: NCBI BLink).  protein_id AT3G04260.1p  transcript_id AT3G04260.1  protein_id AT3G04260.1p  transcript_id AT3G04260.1  
At3g04270	chr3:001127904	0.0	C/1127904-1128080	AT3G04270.1  CDS  gene_syn T6K12.11, T6K12_11  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G04270.1p  transcript_id AT3G04270.1  protein_id AT3G04270.1p  transcript_id AT3G04270.1  
At3g04280	chr3:001130438	0.0	C/1130438-1130689,1130138-1130314	AT3G04280.1  CDS  gene_syn ARABIDOPSIS RESPONSE REGULATOR 22, ARR22, T6K12.10, T6K12_10  gene ARR22  function Encodes an atypical subtype of the ARR (Arabidopsis response regulator) protein family. ARR22 is more similar to the receiver domains of hybrid kinases than other response regulators. It acts as a phosphohistidine phosphatase when tested with phospho-AHP5 in vitro suggesting that it might be involved in a two-component phosphorelay. Expression of ARR22 transcripts appears to be localized to the chalaza and to be induced by wounding. Ectopic expression of ARR in other parts of the plant leads to reduced cytokinin-related responses and impaired root, shoot, and flower development. Overexpression of wild-type ARR22 in an arr22 mutant background causes variable defects in plant growth and fertility. But, in the same ar22 background, over-expression of versions of ARR22 that should act as dominant-negative or constitutively active proteins, based on mutations to the conserved Asp residue, do not show any phenotypic abnormalities, raising the possibility that these may not act as canonical response regulators.  go_component nucleus|GO:0005634|18625081|IDA  go_component cytoplasm|GO:0005737|15356332|IDA  go_process two-component signal transduction system (phosphorelay)|GO:0000160|15356332|IC  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_process cytokinin mediated signaling|GO:0009736|15356332|IMP  go_function two-component response regulator activity|GO:0000156|11574878|ISS  go_function two-component response regulator activity|GO:0000156|12068096|ISS  go_function two-component response regulator activity|GO:0000156||ISS  go_function phosphohistidine phosphatase activity|GO:0008969|15356332|IDA  go_function transcription regulator activity|GO:0030528|12068096|TAS  product ARR22 (ARABIDOPSIS RESPONSE REGULATOR 22); phosphohistidine phosphatase/ transcription regulator/ two-component response regulator  note ARABIDOPSIS RESPONSE REGULATOR 22 (ARR22); FUNCTIONS IN: phosphohistidine phosphatase activity, transcription regulator activity, two-component response regulator activity; INVOLVED IN: cytokinin mediated signaling, two-component signal transduction system (phosphorelay); LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: fruit development stages, seed development stages; CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver region (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: ARR24 (Arabidopsis response regulator 24); two-component response regulator (TAIR:AT5G26594.1); Has 23451 Blast hits to 23035 proteins in 1478 species: Archae - 169; Bacteria - 19886; Metazoa - 10; Fungi - 791; Plants - 296; Viruses - 9; Other Eukaryotes - 2290 (source: NCBI BLink).  protein_id AT3G04280.1p  transcript_id AT3G04280.1  protein_id AT3G04280.1p  transcript_id AT3G04280.1  
At3g04280	chr3:001130438	0.0	C/1130438-1130689,1130138-1130314	AT3G04280.2  CDS  gene_syn ARABIDOPSIS RESPONSE REGULATOR 22, ARR22, T6K12.10, T6K12_10  gene ARR22  function Encodes an atypical subtype of the ARR (Arabidopsis response regulator) protein family. ARR22 is more similar to the receiver domains of hybrid kinases than other response regulators. It acts as a phosphohistidine phosphatase when tested with phospho-AHP5 in vitro suggesting that it might be involved in a two-component phosphorelay. Expression of ARR22 transcripts appears to be localized to the chalaza and to be induced by wounding. Ectopic expression of ARR in other parts of the plant leads to reduced cytokinin-related responses and impaired root, shoot, and flower development. Overexpression of wild-type ARR22 in an arr22 mutant background causes variable defects in plant growth and fertility. But, in the same ar22 background, over-expression of versions of ARR22 that should act as dominant-negative or constitutively active proteins, based on mutations to the conserved Asp residue, do not show any phenotypic abnormalities, raising the possibility that these may not act as canonical response regulators.  go_component nucleus|GO:0005634|18625081|IDA  go_component cytoplasm|GO:0005737|15356332|IDA  go_process two-component signal transduction system (phosphorelay)|GO:0000160|15356332|IC  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_process cytokinin mediated signaling|GO:0009736|15356332|IMP  go_function two-component response regulator activity|GO:0000156|11574878|ISS  go_function two-component response regulator activity|GO:0000156|12068096|ISS  go_function two-component response regulator activity|GO:0000156||ISS  go_function phosphohistidine phosphatase activity|GO:0008969|15356332|IDA  go_function transcription regulator activity|GO:0030528|12068096|TAS  product ARR22 (ARABIDOPSIS RESPONSE REGULATOR 22); phosphohistidine phosphatase/ transcription regulator/ two-component response regulator  note ARABIDOPSIS RESPONSE REGULATOR 22 (ARR22); FUNCTIONS IN: phosphohistidine phosphatase activity, transcription regulator activity, two-component response regulator activity; INVOLVED IN: cytokinin mediated signaling, two-component signal transduction system (phosphorelay); LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: fruit development stages, seed development stages; CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver region (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: ARR24 (Arabidopsis response regulator 24); two-component response regulator (TAIR:AT5G26594.1); Has 23451 Blast hits to 23035 proteins in 1478 species: Archae - 169; Bacteria - 19886; Metazoa - 10; Fungi - 791; Plants - 296; Viruses - 9; Other Eukaryotes - 2290 (source: NCBI BLink).  protein_id AT3G04280.2p  transcript_id AT3G04280.2  protein_id AT3G04280.2p  transcript_id AT3G04280.2  
At3g04280	chr3:001130438	0.0	C/1130438-1130689,1130138-1130314	AT3G04280.3  CDS  gene_syn ARABIDOPSIS RESPONSE REGULATOR 22, ARR22, T6K12.10, T6K12_10  gene ARR22  function Encodes an atypical subtype of the ARR (Arabidopsis response regulator) protein family. ARR22 is more similar to the receiver domains of hybrid kinases than other response regulators. It acts as a phosphohistidine phosphatase when tested with phospho-AHP5 in vitro suggesting that it might be involved in a two-component phosphorelay. Expression of ARR22 transcripts appears to be localized to the chalaza and to be induced by wounding. Ectopic expression of ARR in other parts of the plant leads to reduced cytokinin-related responses and impaired root, shoot, and flower development. Overexpression of wild-type ARR22 in an arr22 mutant background causes variable defects in plant growth and fertility. But, in the same ar22 background, over-expression of versions of ARR22 that should act as dominant-negative or constitutively active proteins, based on mutations to the conserved Asp residue, do not show any phenotypic abnormalities, raising the possibility that these may not act as canonical response regulators.  go_component nucleus|GO:0005634|18625081|IDA  go_component cytoplasm|GO:0005737|15356332|IDA  go_process two-component signal transduction system (phosphorelay)|GO:0000160|15356332|IC  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_process cytokinin mediated signaling|GO:0009736|15356332|IMP  go_function two-component response regulator activity|GO:0000156|11574878|ISS  go_function two-component response regulator activity|GO:0000156|12068096|ISS  go_function two-component response regulator activity|GO:0000156||ISS  go_function phosphohistidine phosphatase activity|GO:0008969|15356332|IDA  go_function transcription regulator activity|GO:0030528|12068096|TAS  product ARR22 (ARABIDOPSIS RESPONSE REGULATOR 22); phosphohistidine phosphatase/ transcription regulator/ two-component response regulator  note ARABIDOPSIS RESPONSE REGULATOR 22 (ARR22); FUNCTIONS IN: phosphohistidine phosphatase activity, transcription regulator activity, two-component response regulator activity; INVOLVED IN: cytokinin mediated signaling, two-component signal transduction system (phosphorelay); LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: fruit development stages, seed development stages; CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver region (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: ARR24 (Arabidopsis response regulator 24); two-component response regulator (TAIR:AT5G26594.1); Has 23451 Blast hits to 23035 proteins in 1478 species: Archae - 169; Bacteria - 19886; Metazoa - 10; Fungi - 791; Plants - 296; Viruses - 9; Other Eukaryotes - 2290 (source: NCBI BLink).  protein_id AT3G04280.3p  transcript_id AT3G04280.3  protein_id AT3G04280.3p  transcript_id AT3G04280.3  
At3g04290	chr3:001135983	0.0	C/1135983-1136223,1135764-1135891,1135100-1135342,1134445-1134697,1133620-1133855	AT3G04290.1  CDS  gene_syn ATLTL1, LI-TOLERANT LIPASE 1, LTL1, T6K12.9, T6K12_9  gene LTL1  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product LTL1 (LI-TOLERANT LIPASE 1); carboxylesterase/ hydrolase, acting on ester bonds  note LI-TOLERANT LIPASE 1 (LTL1); FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT5G33370.1); Has 1743 Blast hits to 1727 proteins in 129 species: Archae - 0; Bacteria - 166; Metazoa - 1; Fungi - 3; Plants - 1557; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT3G04290.1p  transcript_id AT3G04290.1  protein_id AT3G04290.1p  transcript_id AT3G04290.1  
At3g04300	chr3:001140318	0.0	W/1140318-1140388,1140504-1140723	AT3G04300.1  CDS  gene_syn T6K12.8, T6K12_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Protein of unknown function DUF861, cupin-3 (InterPro:IPR008579), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10300.1); Has 364 Blast hits to 364 proteins in 91 species: Archae - 0; Bacteria - 191; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT3G04300.1p  transcript_id AT3G04300.1  protein_id AT3G04300.1p  transcript_id AT3G04300.1  
At3g04310	chr3:001142235	0.0	C/1142235-1142528,1141581-1142096	AT3G04310.1  CDS  gene_syn T6K12.7, T6K12_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33250.1); Has 19 Blast hits to 19 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G04310.1p  transcript_id AT3G04310.1  protein_id AT3G04310.1p  transcript_id AT3G04310.1  
At3g04320	chr3:001143815	0.0	W/1143815-1144426	AT3G04320.1  CDS  gene_syn T6K12.6, T6K12_6  go_component endomembrane system|GO:0012505||IEA  go_function endopeptidase inhibitor activity|GO:0004866||IEA  go_process biological_process|GO:0008150||ND  go_function endopeptidase inhibitor activity|GO:0004866||ISS  product endopeptidase inhibitor  note endopeptidase inhibitor; FUNCTIONS IN: endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I3, Kunitz legume (InterPro:IPR002160), Kunitz inhibitor ST1-like (InterPro:IPR011065); BEST Arabidopsis thaliana protein match is: trypsin and protease inhibitor family protein / Kunitz family protein (TAIR:AT3G04330.1); Has 122 Blast hits to 122 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G04320.1p  transcript_id AT3G04320.1  protein_id AT3G04320.1p  transcript_id AT3G04320.1  
At3g04330	chr3:001145757	0.0	W/1145757-1146365	AT3G04330.1  CDS  gene_syn T6K12.5, T6K12_5  go_component endomembrane system|GO:0012505||IEA  go_function endopeptidase inhibitor activity|GO:0004866||IEA  go_process biological_process|GO:0008150||ND  go_function endopeptidase inhibitor activity|GO:0004866||ISS  product trypsin and protease inhibitor family protein / Kunitz family protein  note trypsin and protease inhibitor family protein / Kunitz family protein; FUNCTIONS IN: endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I3, Kunitz legume (InterPro:IPR002160), Kunitz inhibitor ST1-like (InterPro:IPR011065); BEST Arabidopsis thaliana protein match is: endopeptidase inhibitor (TAIR:AT3G04320.1); Has 49 Blast hits to 49 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G04330.1p  transcript_id AT3G04330.1  protein_id AT3G04330.1p  transcript_id AT3G04330.1  
At3g04340	chr3:001152347	0.0	C/1152347-1153341,1151524-1151995,1150879-1151079,1150511-1150804,1150160-1150429,1149817-1150038,1149569-1149742,1149301-1149422,1148963-1149164,1148627-1148755,1148041-1148529,1147877-1147951,1147618-1147677,1147315-1147422,1147138-1147218,1146943-1147011	AT3G04340.1  CDS  gene_syn T6K12.4, T6K12_4, emb2458, embryo defective 2458  gene emb2458  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function ATPase activity|GO:0016887||ISS  product emb2458 (embryo defective 2458); ATP binding / ATPase/ metalloendopeptidase/ nucleoside-triphosphatase/ nucleotide binding  note embryo defective 2458 (emb2458); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, metalloendopeptidase activity, nucleotide binding, ATP binding; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: VAR1 (VARIEGATED 1); ATP-dependent peptidase/ ATPase/ metallopeptidase (TAIR:AT5G42270.1); Has 19868 Blast hits to 18099 proteins in 1708 species: Archae - 820; Bacteria - 5233; Metazoa - 3689; Fungi - 2234; Plants - 1448; Viruses - 11; Other Eukaryotes - 6433 (source: NCBI BLink).  protein_id AT3G04340.1p  transcript_id AT3G04340.1  protein_id AT3G04340.1p  transcript_id AT3G04340.1  
At3g04350	chr3:001156358	0.0	C/1156358-1156469,1153972-1155563	AT3G04350.1  CDS  gene_syn T6K12.3, T6K12_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946, plant (InterPro:IPR009291); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18490.1); Has 236 Blast hits to 226 proteins in 65 species: Archae - 0; Bacteria - 12; Metazoa - 16; Fungi - 92; Plants - 109; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT3G04350.1p  transcript_id AT3G04350.1  protein_id AT3G04350.1p  transcript_id AT3G04350.1  
At3g04360	chr3:001157025	0.0	C/1157025-1158200	AT3G04360.1  CDS  gene_syn T6K12.2, T6K12_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT2G33320.1); Has 156 Blast hits to 156 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 156; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G04360.1p  transcript_id AT3G04360.1  protein_id AT3G04360.1p  transcript_id AT3G04360.1  
At3g04370	chr3:001159430	0.0	W/1159430-1159892,1160149-1160517,1160602-1160721,1160952-1160959	AT3G04370.1  CDS  gene_syn PDLP4, PLASMODESMATA-LOCATED PROTEIN 4, T27C4.1, T27C4_1  gene PDLP4  function Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.  go_component plasmodesma|GO:0009506|18215111|IDA  go_process biological_process|GO:0008150||ND  product PDLP4 (PLASMODESMATA-LOCATED PROTEIN 4)  note PLASMODESMATA-LOCATED PROTEIN 4 (PDLP4); INVOLVED IN: biological_process unknown; LOCATED IN: plasmodesma; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: PDLP3 (PLASMODESMATA-LOCATED PROTEIN 3) (TAIR:AT2G33330.1); Has 161 Blast hits to 159 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 161; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G04370.1p  transcript_id AT3G04370.1  protein_id AT3G04370.1p  transcript_id AT3G04370.1  
At3g04370	chr3:001159430	0.0	W/1159430-1159892,1160152-1160517,1160602-1160721,1160952-1160959	AT3G04370.2  CDS  gene_syn PDLP4, PLASMODESMATA-LOCATED PROTEIN 4, T27C4.1, T27C4_1  gene PDLP4  function Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.  go_component plasmodesma|GO:0009506|18215111|IDA  go_process biological_process|GO:0008150||ND  product PDLP4 (PLASMODESMATA-LOCATED PROTEIN 4)  note PLASMODESMATA-LOCATED PROTEIN 4 (PDLP4); INVOLVED IN: biological_process unknown; LOCATED IN: plasmodesma; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: PDLP2 (PLASMODESMATA-LOCATED PROTEIN 2) (TAIR:AT1G04520.1); Has 173 Blast hits to 170 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G04370.2p  transcript_id AT3G04370.2  protein_id AT3G04370.2p  transcript_id AT3G04370.2  
At3g04380	chr3:001161602	0.0	W/1161602-1161626,1162044-1162292,1162374-1162933,1163127-1163389,1163473-1163539,1163642-1163692,1163982-1164075,1164311-1164367,1164508-1164539	AT3G04380.2  CDS  gene_syn SDG31, SET DOMAIN PROTEIN 31, SUVR4, T27C4.2, T27C4_2  gene SUVR4  function Encodes SUVR4, a nucleolar histone methyltransferase with preference for monomethylated H3K9. One of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins. Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity. SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain.  go_process chromatin modification|GO:0016568||IEA  go_component nucleolus|GO:0005730|17020925|IDA  go_function histone-lysine N-methyltransferase activity|GO:0018024|17020925|IDA  product SUVR4; histone-lysine N-methyltransferase  note SUVR4; FUNCTIONS IN: histone-lysine N-methyltransferase activity; INVOLVED IN: chromatin modification; LOCATED IN: nucleolus; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), WIYLD domain (InterPro:IPR018848), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Pre-SET zinc-binding region (InterPro:IPR007728); BEST Arabidopsis thaliana protein match is: SUVR1 (ARABIDOPSIS HOMOLOG OF SU(VAR)3-9 1); histone-lysine N-methyltransferase/ zinc ion binding (TAIR:AT1G04050.1); Has 3315 Blast hits to 3167 proteins in 308 species: Archae - 0; Bacteria - 231; Metazoa - 1652; Fungi - 314; Plants - 460; Viruses - 0; Other Eukaryotes - 658 (source: NCBI BLink).  protein_id AT3G04380.2p  transcript_id AT3G04380.2  protein_id AT3G04380.2p  transcript_id AT3G04380.2  
At3g04380	chr3:001161602	0.0	W/1161602-1161626,1162044-1162933,1163127-1163389,1163473-1163539,1163642-1163692,1163982-1164075,1164311-1164367,1164508-1164539	AT3G04380.1  CDS  gene_syn SDG31, SET DOMAIN PROTEIN 31, SUVR4, T27C4.2, T27C4_2  gene SUVR4  function Encodes SUVR4, a nucleolar histone methyltransferase with preference for monomethylated H3K9. One of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins. Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity. SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain.  go_process chromatin modification|GO:0016568||IEA  go_component nucleolus|GO:0005730|17020925|IDA  go_function histone-lysine N-methyltransferase activity|GO:0018024|17020925|IDA  product SUVR4; histone-lysine N-methyltransferase  note SUVR4; FUNCTIONS IN: histone-lysine N-methyltransferase activity; INVOLVED IN: chromatin modification; LOCATED IN: nucleolus; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), WIYLD domain (InterPro:IPR018848), Post-SET zinc-binding region (InterPro:IPR003616), Pre-SET zinc-binding region (InterPro:IPR007728); BEST Arabidopsis thaliana protein match is: SUVR1 (ARABIDOPSIS HOMOLOG OF SU(VAR)3-9 1); histone-lysine N-methyltransferase/ zinc ion binding (TAIR:AT1G04050.1); Has 3301 Blast hits to 3160 proteins in 308 species: Archae - 0; Bacteria - 231; Metazoa - 1646; Fungi - 314; Plants - 453; Viruses - 0; Other Eukaryotes - 657 (source: NCBI BLink).  protein_id AT3G04380.1p  transcript_id AT3G04380.1  protein_id AT3G04380.1p  transcript_id AT3G04380.1  
At3g04390	chr3:001165661	0.0	C/1165661-1165765,1165375-1165509	AT3G04390.1  CDS  gene_syn T27C4.3, T27C4_3  go_component endomembrane system|GO:0012505||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product xanthine dehydrogenase family protein  note xanthine dehydrogenase family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding (InterPro:IPR008274); BEST Arabidopsis thaliana protein match is: XDH1 (XANTHINE DEHYDROGENASE 1); xanthine dehydrogenase (TAIR:AT4G34890.1); Has 876 Blast hits to 876 proteins in 239 species: Archae - 0; Bacteria - 204; Metazoa - 299; Fungi - 54; Plants - 23; Viruses - 0; Other Eukaryotes - 296 (source: NCBI BLink).  protein_id AT3G04390.1p  transcript_id AT3G04390.1  protein_id AT3G04390.1p  transcript_id AT3G04390.1  
At3g04400	chr3:001167339	0.0	W/1167339-1167351,1167579-1167863,1167948-1167989,1168226-1168308	AT3G04400.1  CDS  gene_syn T27C4.4, T27C4_4, emb2171, embryo defective 2171  gene emb2171  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function structural constituent of ribosome|GO:0003735||ISS  product emb2171 (embryo defective 2171); structural constituent of ribosome  note embryo defective 2171 (emb2171); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: embryonic development ending in seed dormancy, translation; LOCATED IN: cytosolic large ribosomal subunit, ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L14b/L23e (InterPro:IPR000218); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L23 (RPL23B) (TAIR:AT2G33370.1); Has 6297 Blast hits to 6297 proteins in 1833 species: Archae - 236; Bacteria - 2977; Metazoa - 280; Fungi - 176; Plants - 586; Viruses - 0; Other Eukaryotes - 2042 (source: NCBI BLink).  protein_id AT3G04400.1p  transcript_id AT3G04400.1  protein_id AT3G04400.1p  transcript_id AT3G04400.1  
At3g04410	chr3:001168837	0.0	W/1168837-1168938,1169077-1169205	AT3G04410.1  CDS  gene_syn T27C4.5, T27C4_5  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC004 (Arabidopsis NAC domain containing protein 4); transcription factor (TAIR:AT1G02230.1); Has 26 Blast hits to 14 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G04410.1p  transcript_id AT3G04410.1  protein_id AT3G04410.1p  transcript_id AT3G04410.1  
At3g04420	chr3:001172840	0.0	W/1172840-1172993,1173067-1173323,1173417-1173554,1173633-1173836,1173916-1173993,1174098-1174295	AT3G04420.1  CDS  gene_syn Arabidopsis NAC domain containing protein 48, T27C4.6, T27C4_6, anac048  gene anac048  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac048 (Arabidopsis NAC domain containing protein 48); transcription factor  note Arabidopsis NAC domain containing protein 48 (anac048); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC003 (Arabidopsis NAC domain containing protein 3); transcription factor (TAIR:AT1G02220.1); Has 1450 Blast hits to 1439 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1449; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G04420.1p  transcript_id AT3G04420.1  protein_id AT3G04420.1p  transcript_id AT3G04420.1  
At3g04420	chr3:001172840	0.0	W/1172840-1172997,1173077-1173323,1173417-1173554,1173633-1173836,1173916-1173993,1174098-1174295	AT3G04420.2  CDS  gene_syn Arabidopsis NAC domain containing protein 48, T27C4.6, T27C4_6, anac048  gene anac048  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac048 (Arabidopsis NAC domain containing protein 48); transcription factor  note Arabidopsis NAC domain containing protein 48 (anac048); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC003 (Arabidopsis NAC domain containing protein 3); transcription factor (TAIR:AT1G02220.1); Has 1445 Blast hits to 1434 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1444; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G04420.2p  transcript_id AT3G04420.2  protein_id AT3G04420.2p  transcript_id AT3G04420.2  
At3g04430	chr3:001176845	0.0	C/1176845-1176986,1176451-1176740,1175850-1175918,1175506-1175601	AT3G04430.1  CDS  gene_syn Arabidopsis NAC domain containing protein 49, T27C4.7, T27C4_7, anac049  gene anac049  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac049 (Arabidopsis NAC domain containing protein 49); transcription factor  note Arabidopsis NAC domain containing protein 49 (anac049); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac067 (Arabidopsis NAC domain containing protein 67); transcription factor (TAIR:AT4G01520.1); Has 1233 Blast hits to 1231 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1233; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G04430.1p  transcript_id AT3G04430.1  protein_id AT3G04430.1p  transcript_id AT3G04430.1  
At3g04440	chr3:001178718	0.0	W/1178718-1178819,1179106-1180254,1180340-1180537	AT3G04440.1  CDS  gene_syn T27C4.8, T27C4_8  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03700.1); Has 204 Blast hits to 204 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 81; Plants - 87; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT3G04440.1p  transcript_id AT3G04440.1  protein_id AT3G04440.1p  transcript_id AT3G04440.1  
At3g04445	chr3:001181771	0.0	W/1181771-1182811	AT3G04445.1  pseudogenic_transcript  pseudo  gene_syn T27C4.9  note pseudogene, putative polyribonucleotide phophorylase, similar to polyribonucleotide phophorylase GB:AAC49669 from (Spinacia oleracea); blastp match of 58% identity and 7.3e-14 P-value to PIR|S64680|S64680 exoribonuclease 100 RNP - spinach  
At3g04450	chr3:001184302	0.0	W/1184302-1184892,1184984-1185179,1185272-1185348,1185428-1185473,1185616-1185676,1185773-1185842,1185977-1186264	AT3G04450.1  CDS  gene_syn T27C4.10, T27C4_10  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT5G29000.2); Has 978 Blast hits to 969 proteins in 64 species: Archae - 0; Bacteria - 7; Metazoa - 35; Fungi - 2; Plants - 895; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT3G04450.1p  transcript_id AT3G04450.1  protein_id AT3G04450.1p  transcript_id AT3G04450.1  
At3g04460	chr3:001186641	0.0	W/1186641-1186748,1186847-1186952,1187042-1187190,1187287-1187536,1187732-1187841,1188084-1188158,1188278-1188364,1188631-1188717,1188801-1188938,1189023-1189094	AT3G04460.1  CDS  gene_syn ABERRANT PEROXISOME MORPHOLOGY 4, APM4, ATPEX12, PEROXIN-12, PEX12, T27C4.11, T27C4_11  gene PEX12  function RING finger protein involved in peroxisome biogenesis.  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component peroxisome|GO:0005777|16113209|IDA  go_component peroxisomal membrane|GO:0005778|16813573|IDA  go_process fatty acid beta-oxidation|GO:0006635|17478547|IMP  go_process peroxisome organization|GO:0007031|16113209|IMP  go_process protein import into peroxisome matrix|GO:0016558|16813573|IMP  go_process protein import into peroxisome matrix|GO:0016558|17478547|IMP  go_process embryonic morphogenesis|GO:0048598|16113209|IMP  product PEX12; protein binding / zinc ion binding  note PEX12; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: protein import into peroxisome matrix, fatty acid beta-oxidation, peroxisome organization, embryonic morphogenesis; LOCATED IN: peroxisomal membrane, peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Pex, N-terminal (InterPro:IPR006845); Has 260 Blast hits to 237 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 128; Fungi - 87; Plants - 24; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT3G04460.1p  transcript_id AT3G04460.1  protein_id AT3G04460.1p  transcript_id AT3G04460.1  
At3g04470	chr3:001190315	0.0	C/1190315-1191853,1189841-1190224	AT3G04470.1  CDS  gene_syn T27C4.12, T27C4_12  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT1G04780.1); Has 842 Blast hits to 642 proteins in 95 species: Archae - 0; Bacteria - 6; Metazoa - 523; Fungi - 26; Plants - 165; Viruses - 4; Other Eukaryotes - 118 (source: NCBI BLink).  protein_id AT3G04470.1p  transcript_id AT3G04470.1  protein_id AT3G04470.1p  transcript_id AT3G04470.1  
At3g04480	chr3:001197243	0.0	C/1197243-1197320,1197025-1197096,1196680-1196759,1196384-1196609,1196239-1196271,1196072-1196154,1195916-1195988,1195506-1195827,1195098-1195429,1194689-1195014,1194289-1194598,1193988-1194209	AT3G04480.1  CDS  gene_syn T27C4.13, T27C4_13  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function endoribonuclease activity|GO:0004521||ISS  product endoribonuclease  note endoribonuclease; FUNCTIONS IN: endoribonuclease activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Protein of unknown function DUF71, ATP-binding region (InterPro:IPR002761), Endoribonuclease L-PSP (InterPro:IPR006175), Endoribonuclease L-PSP/chorismate mutase-like (InterPro:IPR013813); Has 1671 Blast hits to 1617 proteins in 527 species: Archae - 181; Bacteria - 784; Metazoa - 221; Fungi - 114; Plants - 14; Viruses - 0; Other Eukaryotes - 357 (source: NCBI BLink).  protein_id AT3G04480.1p  transcript_id AT3G04480.1  protein_id AT3G04480.1p  transcript_id AT3G04480.1  
At3g04485	chr3:001198114	0.0	W/1198114-1200104	AT3G04485.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G04485.1  
At3g04490	chr3:001200816	0.0	W/1200816-1200923,1201362-1201449,1201534-1201642,1201948-1202046,1202314-1202356,1202810-1202881,1202960-1203055,1203189-1203425,1203584-1203767,1203945-1204056,1204143-1204229,1204315-1204453,1204720-1204816,1204919-1204975,1205091-1205200,1205459-1205563,1205850-1205923,1206220-1206295,1206450-1206662,1206967-1207035,1207349-1207420,1207501-1207565,1207651-1207753,1207837-1207968,1208405-1208512,1208605-1208655,1208719-1208796,1208879-1208992,1209091-1209287,1209367-1209436,1209525-1209713	AT3G04490.1  CDS  gene_syn T27C4.14, T27C4_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38092.1); Has 206 Blast hits to 170 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 6; Plants - 37; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT3G04490.1p  transcript_id AT3G04490.1  protein_id AT3G04490.1p  transcript_id AT3G04490.1  
At3g04500	chr3:001213571	0.0	C/1213571-1213795,1213089-1213266,1212834-1212931,1212470-1212566,1212231-1212316,1212065-1212118	AT3G04500.1  CDS  gene_syn T27C4.15, T27C4_15  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition motif-related (InterPro:IPR015464); BEST Arabidopsis thaliana protein match is: UBP1B (oligouridylate binding protein 1B); mRNA 3 -UTR binding (TAIR:AT1G17370.2); Has 10169 Blast hits to 8298 proteins in 506 species: Archae - 0; Bacteria - 623; Metazoa - 5880; Fungi - 1176; Plants - 1670; Viruses - 0; Other Eukaryotes - 820 (source: NCBI BLink).  protein_id AT3G04500.1p  transcript_id AT3G04500.1  protein_id AT3G04500.1p  transcript_id AT3G04500.1  
At3g04510	chr3:001215812	0.0	C/1215812-1216417	AT3G04510.1  CDS  gene_syn LIGHT SENSITIVE HYPOCOTYLS 2, LSH2, T27C4.16, T27C4_16  gene LSH2  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2)  note LIGHT SENSITIVE HYPOCOTYLS 2 (LSH2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1) (TAIR:AT5G28490.1); Has 183 Blast hits to 183 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G04510.1p  transcript_id AT3G04510.1  protein_id AT3G04510.1p  transcript_id AT3G04510.1  
At3g04520	chr3:001219117	0.0	C/1219117-1219571,1218620-1218731,1218455-1218505,1218292-1218363,1218072-1218204,1217912-1217970,1217710-1217810,1217516-1217582,1217397-1217414	AT3G04520.1  CDS  gene_syn THA2, Threonine Aldolase 2  gene THA2  function Encodes a threonine aldolase, involved in threonine degradation to glycine. Expressed in vascular tissue through out the plant.  go_component cellular_component|GO:0005575||ND  go_process threonine catabolic process|GO:0006567|17172352|IMP  go_function threonine aldolase activity|GO:0004793|17172352|IDA  go_function threonine aldolase activity|GO:0004793||ISS  product THA2 (Threonine Aldolase 2); threonine aldolase  note Threonine Aldolase 2 (THA2); FUNCTIONS IN: threonine aldolase activity; INVOLVED IN: threonine catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aromatic amino acid beta-eliminating lyase/threonine aldolase (InterPro:IPR001597), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: THA1 (Threonine Aldolase 1); aldehyde-lyase/ threonine aldolase (TAIR:AT1G08630.4); Has 2890 Blast hits to 2885 proteins in 711 species: Archae - 9; Bacteria - 1408; Metazoa - 84; Fungi - 146; Plants - 57; Viruses - 0; Other Eukaryotes - 1186 (source: NCBI BLink).  protein_id AT3G04520.1p  transcript_id AT3G04520.1  protein_id AT3G04520.1p  transcript_id AT3G04520.1  
At3g04525	chr3:001220229	0.0	W/1220229-1220301	AT3G04525.1  tRNA  gene_syn 60278.TRNA-ARG-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: CCG)  transcript_id AT3G04525.1  
At3g04530	chr3:001221546	0.0	W/1221546-1222338,1222413-1222456	AT3G04530.1  CDS  gene_syn PEPCK2, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 2, PPCK2, T27C4.19, T27C4_19  gene PPCK2  function Encodes a second Arabidopsis phosphoenolpyruvate carboxylase kinase gene product with a different expression pattern from PPCK1. Expression of the gene is upregulated by exposure of the plant to light.  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468||IDA  go_function protein serine/threonine kinase activity|GO:0004674||IDA  go_function kinase activity|GO:0016301||ISS  product PPCK2; kinase/ protein serine/threonine kinase  note PPCK2; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE); kinase/ protein serine/threonine kinase (TAIR:AT1G08650.1); Has 88136 Blast hits to 86661 proteins in 2340 species: Archae - 74; Bacteria - 8433; Metazoa - 36931; Fungi - 8677; Plants - 16046; Viruses - 475; Other Eukaryotes - 17500 (source: NCBI BLink).  protein_id AT3G04530.1p  transcript_id AT3G04530.1  protein_id AT3G04530.1p  transcript_id AT3G04530.1  
At3g04540	chr3:001223350	0.0	W/1223350-1223389,1223557-1223714	AT3G04540.1  CDS  gene_syn F7O18.19  function Encodes a defensin-like (DEFL) family protein.  product unknown protein  note EXPRESSED IN: embryo, sepal; EXPRESSED DURING: 4 anthesis, C globular stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32763.1); Has 10 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G04540.1p  transcript_id AT3G04540.1  protein_id AT3G04540.1p  transcript_id AT3G04540.1  
At3g04545	chr3:001224966	0.0	W/1224966-1225050,1225165-1225325	AT3G04545.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32763.1); Has 27 Blast hits to 27 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G04545.1p  transcript_id AT3G04545.1  protein_id AT3G04545.1p  transcript_id AT3G04545.1  
At3g04550	chr3:001225961	0.0	W/1225961-1227310	AT3G04550.1  CDS  gene_syn F7O18.2, F7O18_2  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28500.1); Has 79 Blast hits to 79 proteins in 37 species: Archae - 0; Bacteria - 51; Metazoa - 1; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G04550.1p  transcript_id AT3G04550.1  protein_id AT3G04550.1p  transcript_id AT3G04550.1  
At3g04560	chr3:001229161	0.0	C/1229161-1229338,1228961-1229038,1228593-1228876,1228414-1228503,1227876-1228234,1227506-1227770	AT3G04560.1  CDS  gene_syn F7O18.3, F7O18_3  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 16 growth stages; Has 174 Blast hits to 172 proteins in 62 species: Archae - 0; Bacteria - 13; Metazoa - 84; Fungi - 25; Plants - 27; Viruses - 2; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT3G04560.1p  transcript_id AT3G04560.1  protein_id AT3G04560.1p  transcript_id AT3G04560.1  
At3g04570	chr3:001231221	0.0	W/1231221-1232168	AT3G04570.1  CDS  gene_syn F7O18.4, F7O18_4  go_process biological_process|GO:0008150||ND  product DNA-binding protein-related  note DNA-binding protein-related; INVOLVED IN: biological_process unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: DNA-binding protein-related (TAIR:AT4G14465.1); Has 5926 Blast hits to 3243 proteins in 360 species: Archae - 16; Bacteria - 2898; Metazoa - 1052; Fungi - 110; Plants - 1176; Viruses - 67; Other Eukaryotes - 607 (source: NCBI BLink).  protein_id AT3G04570.1p  transcript_id AT3G04570.1  protein_id AT3G04570.1p  transcript_id AT3G04570.1  
At3g04580	chr3:001236205	0.0	C/1236205-1237965,1235576-1236115	AT3G04580.1  CDS  gene_syn EIN4, ETHYLENE INSENSITIVE 4, F7O18.5, F7O18_5  gene EIN4  function Ethylene receptor, subfamily 2. Has serine kinase activity.  go_component endoplasmic reticulum membrane|GO:0005789||IEA  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process negative regulation of ethylene mediated signaling pathway|GO:0010105|9695954|TAS  go_process negative regulation of ethylene mediated signaling pathway|GO:0010105|9707532|TAS  go_function protein histidine kinase activity|GO:0004673||ISS  go_function glycogen synthase kinase 3 activity|GO:0004696|15703053|TAS  go_function receptor activity|GO:0004872|9695954|TAS  go_function receptor activity|GO:0004872|9707532|TAS  go_function ethylene binding|GO:0051740|15703053|IDA  product EIN4 (ETHYLENE INSENSITIVE 4); ethylene binding / glycogen synthase kinase 3/ protein histidine kinase/ receptor  note ETHYLENE INSENSITIVE 4 (EIN4); FUNCTIONS IN: ethylene binding, receptor activity, protein histidine kinase activity, glycogen synthase kinase 3 activity; INVOLVED IN: negative regulation of ethylene mediated signaling pathway; LOCATED IN: endomembrane system, endoplasmic reticulum membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), CheY-like (InterPro:IPR011006), Signal transduction histidine kinase, hybrid-type, ethylene sensor (InterPro:IPR014525), Signal transduction response regulator, receiver region (InterPro:IPR001789), ATP-binding region, ATPase-like (InterPro:IPR003594), Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region (InterPro:IPR003661), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: ETR2 (ethylene response 2); ethylene binding / glycogen synthase kinase 3/ protein histidine kinase/ receptor (TAIR:AT3G23150.1); Has 38315 Blast hits to 34586 proteins in 1648 species: Archae - 214; Bacteria - 31907; Metazoa - 10; Fungi - 1105; Plants - 1265; Viruses - 18; Other Eukaryotes - 3796 (source: NCBI BLink).  protein_id AT3G04580.1p  transcript_id AT3G04580.1  protein_id AT3G04580.1p  transcript_id AT3G04580.1  
At3g04580	chr3:001236205	0.0	C/1236205-1237965,1235576-1236115	AT3G04580.2  CDS  gene_syn EIN4, ETHYLENE INSENSITIVE 4, F7O18.5, F7O18_5  gene EIN4  function Ethylene receptor, subfamily 2. Has serine kinase activity.  go_component endoplasmic reticulum membrane|GO:0005789||IEA  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process negative regulation of ethylene mediated signaling pathway|GO:0010105|9695954|TAS  go_process negative regulation of ethylene mediated signaling pathway|GO:0010105|9707532|TAS  go_function protein histidine kinase activity|GO:0004673||ISS  go_function glycogen synthase kinase 3 activity|GO:0004696|15703053|TAS  go_function receptor activity|GO:0004872|9695954|TAS  go_function receptor activity|GO:0004872|9707532|TAS  go_function ethylene binding|GO:0051740|15703053|IDA  product EIN4 (ETHYLENE INSENSITIVE 4); ethylene binding / glycogen synthase kinase 3/ protein histidine kinase/ receptor  note ETHYLENE INSENSITIVE 4 (EIN4); FUNCTIONS IN: ethylene binding, receptor activity, protein histidine kinase activity, glycogen synthase kinase 3 activity; INVOLVED IN: negative regulation of ethylene mediated signaling pathway; LOCATED IN: endomembrane system, endoplasmic reticulum membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), CheY-like (InterPro:IPR011006), Signal transduction histidine kinase, hybrid-type, ethylene sensor (InterPro:IPR014525), Signal transduction response regulator, receiver region (InterPro:IPR001789), ATP-binding region, ATPase-like (InterPro:IPR003594), Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region (InterPro:IPR003661), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: ETR2 (ethylene response 2); ethylene binding / glycogen synthase kinase 3/ protein histidine kinase/ receptor (TAIR:AT3G23150.1); Has 38315 Blast hits to 34586 proteins in 1648 species: Archae - 214; Bacteria - 31907; Metazoa - 10; Fungi - 1105; Plants - 1265; Viruses - 18; Other Eukaryotes - 3796 (source: NCBI BLink).  protein_id AT3G04580.2p  transcript_id AT3G04580.2  protein_id AT3G04580.2p  transcript_id AT3G04580.2  
At3g04590	chr3:001241111	0.0	C/1241111-1241603,1240696-1240748,1240383-1240514,1239994-1240146,1239507-1239852,1239245-1239303	AT3G04590.2  CDS  gene_syn F7O18.6, F7O18_6  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product DNA-binding family protein  note DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding, conserved site (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: DNA-binding protein-related (TAIR:AT5G28590.1); Has 2965 Blast hits to 2644 proteins in 187 species: Archae - 0; Bacteria - 45; Metazoa - 1692; Fungi - 274; Plants - 459; Viruses - 15; Other Eukaryotes - 480 (source: NCBI BLink).  protein_id AT3G04590.2p  transcript_id AT3G04590.2  protein_id AT3G04590.2p  transcript_id AT3G04590.2  
At3g04590	chr3:001241111	0.0	C/1241111-1241603,1240696-1240748,1240383-1240514,1239994-1240146,1239771-1239852,1239213-1239229	AT3G04590.1  CDS  gene_syn F7O18.6, F7O18_6  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product DNA-binding family protein  note DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding, conserved site (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: DNA-binding protein-related (TAIR:AT5G28590.1); Has 2830 Blast hits to 2511 proteins in 167 species: Archae - 0; Bacteria - 15; Metazoa - 1629; Fungi - 262; Plants - 450; Viruses - 3; Other Eukaryotes - 471 (source: NCBI BLink).  protein_id AT3G04590.1p  transcript_id AT3G04590.1  protein_id AT3G04590.1p  transcript_id AT3G04590.1  
At3g04600	chr3:001243152	0.0	W/1243152-1243372,1243448-1243567,1243657-1243842,1244077-1244128,1244231-1244296,1244378-1244464,1244654-1244746,1244817-1244897,1245148-1245219,1245534-1245602,1245709-1245819,1245908-1245958	AT3G04600.1  CDS  gene_syn F7O18.7, F7O18_7  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function tryptophan-tRNA ligase activity|GO:0004830||IEA  go_function ATP binding|GO:0005524||IEA  go_component cytosol|GO:0005829|16297076|ISS  go_process tRNA aminoacylation for protein translation|GO:0006418||ISS  go_process tryptophanyl-tRNA aminoacylation|GO:0006436|16297076|ISS  go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS  go_function ATP binding|GO:0005524||ISS  product tRNA synthetase class I (W and Y) family protein  note tRNA synthetase class I (W and Y) family protein; FUNCTIONS IN: tryptophan-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: tryptophanyl-tRNA aminoacylation, tRNA aminoacylation for protein translation; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Tryptophanyl-tRNA synthetase, class Ib (InterPro:IPR002306), Aminoacyl-tRNA synthetase, class Ib (InterPro:IPR002305); Has 1506 Blast hits to 1455 proteins in 455 species: Archae - 300; Bacteria - 400; Metazoa - 288; Fungi - 155; Plants - 31; Viruses - 5; Other Eukaryotes - 327 (source: NCBI BLink).  protein_id AT3G04600.1p  transcript_id AT3G04600.1  protein_id AT3G04600.1p  transcript_id AT3G04600.1  
At3g04600	chr3:001243152	0.0	W/1243152-1243372,1243448-1243567,1243657-1243842,1244077-1244128,1244231-1244296,1244378-1244464,1244654-1244746,1244817-1244897,1245148-1245219,1245534-1245602,1245709-1245819,1245908-1245958	AT3G04600.3  CDS  gene_syn F7O18.7, F7O18_7  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function tryptophan-tRNA ligase activity|GO:0004830||IEA  go_function ATP binding|GO:0005524||IEA  go_component cytosol|GO:0005829|16297076|ISS  go_process tRNA aminoacylation for protein translation|GO:0006418||ISS  go_process tryptophanyl-tRNA aminoacylation|GO:0006436|16297076|ISS  go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS  go_function ATP binding|GO:0005524||ISS  product tRNA synthetase class I (W and Y) family protein  note tRNA synthetase class I (W and Y) family protein; FUNCTIONS IN: nucleotide binding, tryptophan-tRNA ligase activity, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: tryptophanyl-tRNA aminoacylation, tRNA aminoacylation for protein translation; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Tryptophanyl-tRNA synthetase, class Ib (InterPro:IPR002306), Aminoacyl-tRNA synthetase, class Ib (InterPro:IPR002305); Has 1506 Blast hits to 1455 proteins in 455 species: Archae - 300; Bacteria - 400; Metazoa - 288; Fungi - 155; Plants - 31; Viruses - 5; Other Eukaryotes - 327 (source: NCBI BLink).  protein_id AT3G04600.3p  transcript_id AT3G04600.3  protein_id AT3G04600.3p  transcript_id AT3G04600.3  
At3g04600	chr3:001243152	0.0	W/1243152-1243372,1243448-1243567,1243657-1243842,1244077-1244128,1244231-1244296,1244378-1244464,1244654-1244750,1244821-1244897,1245148-1245219,1245534-1245602,1245709-1245819,1245908-1245958	AT3G04600.2  CDS  gene_syn F7O18.7, F7O18_7  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function tryptophan-tRNA ligase activity|GO:0004830||IEA  go_function ATP binding|GO:0005524||IEA  go_component cytosol|GO:0005829|16297076|ISS  go_process tRNA aminoacylation for protein translation|GO:0006418||ISS  go_process tryptophanyl-tRNA aminoacylation|GO:0006436|16297076|ISS  go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS  go_function ATP binding|GO:0005524||ISS  product tRNA synthetase class I (W and Y) family protein  note tRNA synthetase class I (W and Y) family protein; FUNCTIONS IN: nucleotide binding, aminoacyl-tRNA ligase activity, tryptophan-tRNA ligase activity, ATP binding; INVOLVED IN: tryptophanyl-tRNA aminoacylation, tRNA aminoacylation for protein translation; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Tryptophanyl-tRNA synthetase, class Ib (InterPro:IPR002306), Aminoacyl-tRNA synthetase, class Ib (InterPro:IPR002305); Has 1419 Blast hits to 1363 proteins in 443 species: Archae - 295; Bacteria - 371; Metazoa - 244; Fungi - 151; Plants - 31; Viruses - 5; Other Eukaryotes - 322 (source: NCBI BLink).  protein_id AT3G04600.2p  transcript_id AT3G04600.2  protein_id AT3G04600.2p  transcript_id AT3G04600.2  
At3g04605	chr3:001246669	0.0	W/1246669-1250395	AT3G04605.1  mRNA_TE_gene  pseudo  gene_syn F7O18.8, F7O18_8  note Transposable element gene, Mutator-like transposase family, has a 5.9e-64 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At3g04610	chr3:001253574	0.0	C/1253574-1254272,1252157-1252403,1251721-1251869,1251365-1251637,1251050-1251247,1250762-1250929	AT3G04610.1  CDS  gene_syn F7O18.9, F7O18_9, FLK, flowering locus KH domain  gene FLK  go_function RNA binding|GO:0003723||IEA  go_component nucleus|GO:0005634|15310842|IDA  go_process positive regulation of flower development|GO:0009911|15310842|IMP  go_function nucleic acid binding|GO:0003676||ISS  product FLK (flowering locus KH domain); RNA binding / nucleic acid binding  note flowering locus KH domain (FLK); FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: positive regulation of flower development; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: PEP (PEPPER); RNA binding / nucleic acid binding (TAIR:AT4G26000.1); Has 7517 Blast hits to 4602 proteins in 299 species: Archae - 0; Bacteria - 217; Metazoa - 3660; Fungi - 662; Plants - 669; Viruses - 248; Other Eukaryotes - 2061 (source: NCBI BLink).  protein_id AT3G04610.1p  transcript_id AT3G04610.1  protein_id AT3G04610.1p  transcript_id AT3G04610.1  
At3g04620	chr3:001256569	0.0	C/1256569-1256739,1256198-1256246,1256041-1256103,1255884-1255948,1255660-1255806	AT3G04620.1  CDS  gene_syn F7O18.10, F7O18_10  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Alba, DNA/RNA-binding protein (InterPro:IPR002775), Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related (InterPro:IPR014560); BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT1G29250.1); Has 89 Blast hits to 89 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT3G04620.1p  transcript_id AT3G04620.1  protein_id AT3G04620.1p  transcript_id AT3G04620.1  
At3g04630	chr3:001259231	0.0	W/1259231-1259461,1259567-1259661,1259771-1259864,1260034-1260105,1260191-1260301,1260392-1260652	AT3G04630.1  CDS  gene_syn F7O18.11, F7O18_11, WDL1  gene WDL1  function Member of a small gene family which have a KLEEK domain which may be involved in protein- protein interactions. Over expression of WDL1 results in abnormal root development.  go_component cytoplasm|GO:0005737|12586874|ISS  go_process root morphogenesis|GO:0010015|12586874|IMP  go_process circumnutation|GO:0010031|12586874|IMP  go_function molecular_function|GO:0003674||ND  product WDL1  note WDL1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: circumnutation, root morphogenesis; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Targeting for Xklp2 (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: WVD2 (TAIR:AT5G28646.2); Has 383 Blast hits to 383 proteins in 70 species: Archae - 0; Bacteria - 10; Metazoa - 119; Fungi - 21; Plants - 163; Viruses - 4; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT3G04630.1p  transcript_id AT3G04630.1  protein_id AT3G04630.1p  transcript_id AT3G04630.1  
At3g04630	chr3:001259231	0.0	W/1259231-1259461,1259570-1259661,1259771-1259864,1260034-1260105,1260191-1260301,1260392-1260652	AT3G04630.2  CDS  gene_syn F7O18.11, F7O18_11, WDL1  gene WDL1  function Member of a small gene family which have a KLEEK domain which may be involved in protein- protein interactions. Over expression of WDL1 results in abnormal root development.  go_component cytoplasm|GO:0005737|12586874|ISS  go_process root morphogenesis|GO:0010015|12586874|IMP  go_process circumnutation|GO:0010031|12586874|IMP  go_function molecular_function|GO:0003674||ND  product WDL1  note WDL1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: circumnutation, root morphogenesis; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Targeting for Xklp2 (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: WVD2 (TAIR:AT5G28646.2); Has 388 Blast hits to 381 proteins in 71 species: Archae - 0; Bacteria - 14; Metazoa - 122; Fungi - 17; Plants - 162; Viruses - 4; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT3G04630.2p  transcript_id AT3G04630.2  protein_id AT3G04630.2p  transcript_id AT3G04630.2  
At3g04630	chr3:001259231	0.0	W/1259231-1259461,1259570-1259661,1259771-1259864,1260034-1260105,1260191-1260301,1260392-1260652	AT3G04630.3  CDS  gene_syn F7O18.11, F7O18_11, WDL1  gene WDL1  function Member of a small gene family which have a KLEEK domain which may be involved in protein- protein interactions. Over expression of WDL1 results in abnormal root development.  go_component cytoplasm|GO:0005737|12586874|ISS  go_process root morphogenesis|GO:0010015|12586874|IMP  go_process circumnutation|GO:0010031|12586874|IMP  go_function molecular_function|GO:0003674||ND  product WDL1  note WDL1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: circumnutation, root morphogenesis; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Targeting for Xklp2 (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: WVD2 (TAIR:AT5G28646.2); Has 388 Blast hits to 381 proteins in 71 species: Archae - 0; Bacteria - 14; Metazoa - 122; Fungi - 17; Plants - 162; Viruses - 4; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT3G04630.3p  transcript_id AT3G04630.3  protein_id AT3G04630.3p  transcript_id AT3G04630.3  
At3g04640	chr3:001261062	0.0	C/1261062-1261541	AT3G04640.1  CDS  gene_syn F7O18.12, F7O18_12  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 40182 Blast hits to 12853 proteins in 995 species: Archae - 39; Bacteria - 14362; Metazoa - 12477; Fungi - 2372; Plants - 5341; Viruses - 527; Other Eukaryotes - 5064 (source: NCBI BLink).  protein_id AT3G04640.1p  transcript_id AT3G04640.1  protein_id AT3G04640.1p  transcript_id AT3G04640.1  
At3g04640	chr3:001261062	0.0	C/1261062-1261541	AT3G04640.2  CDS  gene_syn F7O18.12, F7O18_12  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 40182 Blast hits to 12853 proteins in 995 species: Archae - 39; Bacteria - 14362; Metazoa - 12477; Fungi - 2372; Plants - 5341; Viruses - 527; Other Eukaryotes - 5064 (source: NCBI BLink).  protein_id AT3G04640.2p  transcript_id AT3G04640.2  protein_id AT3G04640.2p  transcript_id AT3G04640.2  
At3g04640	chr3:001261310	0.0	C/1261310-1261541,1261062-1261189	AT3G04640.3  CDS  gene_syn F7O18.12, F7O18_12  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 20 Blast hits to 20 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G04640.3p  transcript_id AT3G04640.3  protein_id AT3G04640.3p  transcript_id AT3G04640.3  
At3g04650	chr3:001262017	0.0	W/1262017-1262385,1262749-1263021,1263112-1263238,1263328-1263389,1263468-1263677,1263751-1263872,1263945-1264083,1264185-1264343	AT3G04650.1  CDS  gene_syn F7O18.13, F7O18_13  go_component chloroplast|GO:0009507||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product oxidoreductase  note oxidoreductase; FUNCTIONS IN: oxidoreductase activity; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: FAD dependent oxidoreductase (InterPro:IPR006076); BEST Arabidopsis thaliana protein match is: amine oxidase-related (TAIR:AT1G56000.1); Has 721 Blast hits to 720 proteins in 164 species: Archae - 8; Bacteria - 272; Metazoa - 6; Fungi - 2; Plants - 78; Viruses - 0; Other Eukaryotes - 355 (source: NCBI BLink).  protein_id AT3G04650.1p  transcript_id AT3G04650.1  protein_id AT3G04650.1p  transcript_id AT3G04650.1  
At3g04660	chr3:001264794	0.0	W/1264794-1265966	AT3G04660.1  CDS  gene_syn F7O18.14, F7O18_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein-related (TAIR:AT2G13630.1); Has 747 Blast hits to 721 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 747; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G04660.1p  transcript_id AT3G04660.1  protein_id AT3G04660.1p  transcript_id AT3G04660.1  
At3g04670	chr3:001266973	0.0	C/1266973-1267691,1266737-1266890	AT3G04670.2  CDS  gene_syn AtWRKY39, F7O18.30, F7O18_30, WRKY39  gene WRKY39  function member of WRKY Transcription Factor; Group II-d  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634|10785665|IC  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function calmodulin binding|GO:0005516|15733871|IDA  product WRKY39; calmodulin binding / transcription factor  note WRKY39; FUNCTIONS IN: transcription factor activity, calmodulin binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY, Zn-cluster (InterPro:IPR018872); BEST Arabidopsis thaliana protein match is: WRKY74; calmodulin binding / transcription factor (TAIR:AT5G28650.1); Has 796 Blast hits to 787 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 793; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G04670.2p  transcript_id AT3G04670.2  protein_id AT3G04670.2p  transcript_id AT3G04670.2  
At3g04670	chr3:001266973	0.0	C/1266973-1267691,1266765-1266890,1266530-1266677	AT3G04670.1  CDS  gene_syn AtWRKY39, F7O18.30, F7O18_30, WRKY39  gene WRKY39  function member of WRKY Transcription Factor; Group II-d  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634|10785665|IC  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function calmodulin binding|GO:0005516|15733871|IDA  product WRKY39; calmodulin binding / transcription factor  note WRKY39; FUNCTIONS IN: transcription factor activity, calmodulin binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY, Zn-cluster (InterPro:IPR018872); BEST Arabidopsis thaliana protein match is: WRKY74; calmodulin binding / transcription factor (TAIR:AT5G28650.1); Has 1955 Blast hits to 1675 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1942; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT3G04670.1p  transcript_id AT3G04670.1  protein_id AT3G04670.1p  transcript_id AT3G04670.1  
At3g04680	chr3:001272194	0.0	C/1272194-1272415,1271645-1271713,1271468-1271563,1271141-1271382,1270917-1271055,1270617-1270808,1270291-1270529,1270053-1270188	AT3G04680.1  CDS  gene_syn CLP-SIMILAR PROTEIN 3, CLPS3, F7O18.15, F7O18_15  gene CLPS3  function Encodes a nuclear protein that functions in mRNA processing. Mutations in this gene cause embryo lethality and reduced transmission through the female gametophyte. Over-expression of a CLPS3:TAP protein changes the relative levels of two alternatively processed FCA transcripts. It also causes abnormal phyllotaxy and flower development, early flowering under long and short days, and increased levels of CUC1 and WUS expression.  go_component nucleus|GO:0005634|18971429|IDA  go_component mRNA cleavage factor complex|GO:0005849|18971429|IPI  go_component mRNA cleavage factor complex|GO:0005849||ISS  go_process mRNA processing|GO:0006397|18971429|IMP  go_process flower development|GO:0009908|18971429|IMP  go_process vegetative to reproductive phase transition|GO:0010228|18971429|IMP  go_process phyllome development|GO:0048827|18971429|IMP  go_function binding|GO:0005488||ISS  product CLPS3 (CLP-SIMILAR PROTEIN 3); binding  note CLP-SIMILAR PROTEIN 3 (CLPS3); FUNCTIONS IN: binding; INVOLVED IN: flower development, mRNA processing, phyllome development, vegetative to reproductive phase transition; LOCATED IN: mRNA cleavage factor complex, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pre-mRNA cleavage complex II Clp1 (InterPro:IPR010655); BEST Arabidopsis thaliana protein match is: CLPS5 (CLP1-SIMILAR PROTEIN 5) (TAIR:AT5G39930.1); Has 580 Blast hits to 564 proteins in 182 species: Archae - 65; Bacteria - 7; Metazoa - 168; Fungi - 176; Plants - 45; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT3G04680.1p  transcript_id AT3G04680.1  protein_id AT3G04680.1p  transcript_id AT3G04680.1  
At3g04680	chr3:001272194	0.0	C/1272194-1272415,1271645-1271713,1271468-1271563,1271141-1271382,1270917-1271055,1270617-1270808,1270291-1270529,1270053-1270188	AT3G04680.2  CDS  gene_syn CLP-SIMILAR PROTEIN 3, CLPS3, F7O18.15, F7O18_15  gene CLPS3  function Encodes a nuclear protein that functions in mRNA processing. Mutations in this gene cause embryo lethality and reduced transmission through the female gametophyte. Over-expression of a CLPS3:TAP protein changes the relative levels of two alternatively processed FCA transcripts. It also causes abnormal phyllotaxy and flower development, early flowering under long and short days, and increased levels of CUC1 and WUS expression.  go_component nucleus|GO:0005634|18971429|IDA  go_component mRNA cleavage factor complex|GO:0005849|18971429|IPI  go_component mRNA cleavage factor complex|GO:0005849||ISS  go_process mRNA processing|GO:0006397|18971429|IMP  go_process flower development|GO:0009908|18971429|IMP  go_process vegetative to reproductive phase transition|GO:0010228|18971429|IMP  go_process phyllome development|GO:0048827|18971429|IMP  go_function binding|GO:0005488||ISS  product CLPS3 (CLP-SIMILAR PROTEIN 3); binding  note CLP-SIMILAR PROTEIN 3 (CLPS3); FUNCTIONS IN: binding; INVOLVED IN: flower development, mRNA processing, phyllome development, vegetative to reproductive phase transition; LOCATED IN: mRNA cleavage factor complex, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pre-mRNA cleavage complex II Clp1 (InterPro:IPR010655); BEST Arabidopsis thaliana protein match is: CLPS5 (CLP1-SIMILAR PROTEIN 5) (TAIR:AT5G39930.1); Has 580 Blast hits to 564 proteins in 182 species: Archae - 65; Bacteria - 7; Metazoa - 168; Fungi - 176; Plants - 45; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT3G04680.2p  transcript_id AT3G04680.2  protein_id AT3G04680.2p  transcript_id AT3G04680.2  
At3g04690	chr3:001273386	0.0	C/1273386-1275938	AT3G04690.1  CDS  gene_syn F7O18.16, F7O18_16  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G28680.1); Has 84020 Blast hits to 82820 proteins in 3160 species: Archae - 42; Bacteria - 7195; Metazoa - 37465; Fungi - 6370; Plants - 18535; Viruses - 405; Other Eukaryotes - 14008 (source: NCBI BLink).  protein_id AT3G04690.1p  transcript_id AT3G04690.1  protein_id AT3G04690.1p  transcript_id AT3G04690.1  
At3g04700	chr3:001276948	0.0	W/1276948-1277443,1277528-1277607	AT3G04700.1  CDS  gene_syn F7O18.17, F7O18_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28690.1); Has 92 Blast hits to 92 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G04700.1p  transcript_id AT3G04700.1  protein_id AT3G04700.1p  transcript_id AT3G04700.1  
At3g04710	chr3:001278229	0.0	W/1278229-1278259,1278606-1278668,1278753-1278923,1279008-1279139,1279236-1279375,1279464-1279550,1279649-1279774,1279894-1280034,1280113-1280178,1280263-1280364,1280451-1280621,1280709-1280788,1280882-1280942	AT3G04710.1  CDS  gene_syn F7O18.18, F7O18_18  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT4G12400.2); Has 82277 Blast hits to 31096 proteins in 1059 species: Archae - 199; Bacteria - 7544; Metazoa - 39690; Fungi - 7032; Plants - 3470; Viruses - 1253; Other Eukaryotes - 23089 (source: NCBI BLink).  protein_id AT3G04710.1p  transcript_id AT3G04710.1  protein_id AT3G04710.1p  transcript_id AT3G04710.1  
At3g04710	chr3:001278229	0.0	W/1278229-1278259,1278606-1278668,1278753-1278923,1279008-1279139,1279236-1279375,1279464-1279550,1279649-1279774,1279897-1280034,1280113-1280178,1280263-1280364,1280451-1280621,1280709-1280788,1280882-1280942	AT3G04710.2  CDS  gene_syn F7O18.18, F7O18_18  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT4G12400.2); Has 76108 Blast hits to 30225 proteins in 1046 species: Archae - 196; Bacteria - 7000; Metazoa - 36168; Fungi - 6501; Plants - 3241; Viruses - 1150; Other Eukaryotes - 21852 (source: NCBI BLink).  protein_id AT3G04710.2p  transcript_id AT3G04710.2  protein_id AT3G04710.2p  transcript_id AT3G04710.2  
At3g04715	chr3:001281643	0.0	C/1281643-1282551	AT3G04715.1  pseudogenic_transcript  pseudo  gene_syn F7O18.20  note pseudogene, similar to MAP3K alpha 1 protein kinase, similar to putative serine/threonine protein kinase GB:AAB87581 (Arabidopsis thaliana),; blastp match of 32% identity and 3.4e-21 P-value to GP|3688193|emb|CAA08995.1||AJ010091 MAP3K alpha 1 protein kinase {Brassica napus}  
At3g04717	chr3:001284851	0.0	C/1284851-1285293	AT3G04717.1  pseudogenic_transcript  pseudo  gene_syn F7O18.31  function Encodes a Wound-induced protein (WIP) family protein  note pseudogene, similar to pathogen- and wound-inducible antifungal protein CBP20 precursor, similar to pathogen- and wound-inducible antifungal protein (CBP20) GB:AAB29959 (Nicotiana tabacum); blastp match of 72% identity and 1.5e-32 P-value to GP|7547630|gb|AAB29959.2||S72452 pathogen- and wound-inducible antifungal protein CBP20 precursor {Nicotiana tabacum}  
At3g04720	chr3:001286121	0.0	C/1286121-1286531,1285691-1285918	AT3G04720.1  CDS  gene_syn F7O18.21, F7O18_21, HEL, HEVEIN-LIKE, PATHOGENESIS-RELATED 4, PR-4, PR4  gene PR4  function Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection.  go_component endomembrane system|GO:0012505||IEA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to virus|GO:0009615|8118053|IEP  go_process systemic acquired resistance|GO:0009627|17419843|IEP  go_process response to ethylene stimulus|GO:0009723|8118053|IEP  go_process response to herbivore|GO:0080027|19251652|IEP  go_function chitin binding|GO:0008061|8118053|ISS  product PR4 (PATHOGENESIS-RELATED 4); chitin binding  note PATHOGENESIS-RELATED 4 (PR4); FUNCTIONS IN: chitin binding; INVOLVED IN: response to ethylene stimulus, systemic acquired resistance, response to salt stress, response to virus, response to herbivore; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Barwin (InterPro:IPR001153), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726), Barwin-related endoglucanase (InterPro:IPR009009), Chitin-binding, type 1, conserved site (InterPro:IPR018371), Barwin-like endoglucanase (InterPro:IPR014733), Barwin, conserved site (InterPro:IPR018226), Chitin-binding, type 1 (InterPro:IPR001002); Has 1222 Blast hits to 1015 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 177; Plants - 1009; Viruses - 10; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT3G04720.1p  transcript_id AT3G04720.1  protein_id AT3G04720.1p  transcript_id AT3G04720.1  
At3g04721	chr3:001286927	0.0	C/1286927-1287097	AT3G04721.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G04721.1p  transcript_id AT3G04721.1  protein_id AT3G04721.1p  transcript_id AT3G04721.1  
At3g04730	chr3:001290213	0.0	C/1290213-1290415,1289492-1289763,1289269-1289404,1289112-1289173,1288993-1289030	AT3G04730.1  CDS  gene_syn F7O18.22, F7O18_22, IAA16  gene IAA16  function early auxin-induced (IAA16)  go_component nucleus|GO:0005634||IEA  go_process response to auxin stimulus|GO:0009733|12036262|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product IAA16; transcription factor  note IAA16; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to auxin stimulus; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA7 (INDOLE-3-ACETIC ACID 7); transcription factor (TAIR:AT3G23050.1); Has 1102 Blast hits to 1102 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1101; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G04730.1p  transcript_id AT3G04730.1  protein_id AT3G04730.1p  transcript_id AT3G04730.1  
At3g04732	chr3:001291616	0.0	W/1291616-1291774	AT3G04732.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G04732.1p  transcript_id AT3G04732.1  protein_id AT3G04732.1p  transcript_id AT3G04732.1  
At3g04735	chr3:001292408	0.0	C/1292408-1292725	AT3G04735.1  CDS  gene_syn RALF-LIKE 21, RALFL21  gene RALFL21  function Rapid alkalinization factor (RALF) family protein. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  go_component apoplast|GO:0048046|12611624|ISS  go_process cell-cell signaling|GO:0007267|12611624|ISS  go_function signal transducer activity|GO:0004871|12611624|TAS  product RALFL21 (RALF-LIKE 21); signal transducer  note RALF-LIKE 21 (RALFL21); FUNCTIONS IN: signal transducer activity; INVOLVED IN: cell-cell signaling; LOCATED IN: apoplast; EXPRESSED IN: seed; EXPRESSED DURING: rosette growth complete; CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALFL28 (ralf-like 28); signal transducer (TAIR:AT4G11510.1); Has 13 Blast hits to 13 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G04735.1p  transcript_id AT3G04735.1  protein_id AT3G04735.1p  transcript_id AT3G04735.1  
At3g04740	chr3:001294037	0.0	W/1294037-1294246,1294804-1295829,1296245-1296342,1296419-1296593,1296672-1297428,1297513-1298528,1298634-1299661,1299754-1300555	AT3G04740.1  CDS  gene_syn F7O18.23, F7O18_23, MED14, STRUWWELPETER, SWP  gene SWP  function encodes a protein with similarities to subunits of the Mediator complex, required for RNA polymerase II recruitment at target promoters in response to specific activators. Lines carrying loss of function mutations in the gene have reduced cell numbers in aerial organs. On the other hand, lines overexpressing the gene have increased number of small cells in clusters, suggesting cell division is more unsynchronized in the overexpressors.  go_component mediator complex|GO:0000119|12426376|ISS  go_process positive regulation of cell proliferation|GO:0008284|12426376|IMP  go_process positive regulation of transcription|GO:0045941|12426376|ISS  product SWP (STRUWWELPETER)  note STRUWWELPETER (SWP); INVOLVED IN: positive regulation of transcription, positive regulation of cell proliferation; LOCATED IN: mediator complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit MED14 (InterPro:IPR013947); Has 823 Blast hits to 258 proteins in 109 species: Archae - 0; Bacteria - 34; Metazoa - 106; Fungi - 70; Plants - 36; Viruses - 0; Other Eukaryotes - 577 (source: NCBI BLink).  protein_id AT3G04740.1p  transcript_id AT3G04740.1  protein_id AT3G04740.1p  transcript_id AT3G04740.1  
At3g04750	chr3:001301391	0.0	C/1301391-1303376	AT3G04750.1  CDS  gene_syn F7O18.24, F7O18_24  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G29760.1); Has 13201 Blast hits to 4902 proteins in 138 species: Archae - 0; Bacteria - 4; Metazoa - 48; Fungi - 60; Plants - 12893; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink).  protein_id AT3G04750.1p  transcript_id AT3G04750.1  protein_id AT3G04750.1p  transcript_id AT3G04750.1  
At3g04760	chr3:001303884	0.0	C/1303884-1305692	AT3G04760.1  CDS  gene_syn F7O18.25, F7O18_25  go_component chloroplast|GO:0009507|15028209|IDA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G09900.1); Has 26507 Blast hits to 6286 proteins in 193 species: Archae - 4; Bacteria - 28; Metazoa - 952; Fungi - 704; Plants - 23378; Viruses - 0; Other Eukaryotes - 1441 (source: NCBI BLink).  protein_id AT3G04760.1p  transcript_id AT3G04760.1  protein_id AT3G04760.1p  transcript_id AT3G04760.1  
At3g04765	chr3:001306622	0.0	C/1306622-1306781	AT3G04765.1  miRNA  gene_syn MICRORNA167C, MIR167C  gene MIR167C  function Encodes a microRNA that targets ARF family members ARF6 and ARF8. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UAAGCUGCCAGCAUGAUCUUG  product MIR167C (MICRORNA167C); miRNA  transcript_id AT3G04765.1  
At3g04770	chr3:001310699	0.0	C/1310699-1310846,1310220-1310482,1309678-1310130,1309465-1309599	AT3G04770.1  CDS  gene_syn 40S ribosomal protein SA B, F7O18.26, F7O18_26, P40 HOMOLOGUE, RPSAb  gene RPSAb  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product RPSAb (40S ribosomal protein SA B); structural constituent of ribosome  note 40S ribosomal protein SA B (RPSAb); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, chloroplast, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S2 (InterPro:IPR001865), Ribosomal protein S2, conserved site (InterPro:IPR018130), Ribosomal protein S2, eukaryotic/archaeal (InterPro:IPR005707); BEST Arabidopsis thaliana protein match is: P40; structural constituent of ribosome (TAIR:AT1G72370.2); Has 2091 Blast hits to 2089 proteins in 628 species: Archae - 182; Bacteria - 757; Metazoa - 444; Fungi - 181; Plants - 133; Viruses - 0; Other Eukaryotes - 394 (source: NCBI BLink).  protein_id AT3G04770.1p  transcript_id AT3G04770.1  protein_id AT3G04770.1p  transcript_id AT3G04770.1  
At3g04770	chr3:001310699	0.0	C/1310699-1310846,1310220-1310482,1309933-1310130,1309678-1309855,1309544-1309599	AT3G04770.2  CDS  gene_syn 40S ribosomal protein SA B, F7O18.26, F7O18_26, P40 HOMOLOGUE, RPSAb  gene RPSAb  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product RPSAb (40S ribosomal protein SA B); structural constituent of ribosome  note 40S ribosomal protein SA B (RPSAb); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, chloroplast, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S2 (InterPro:IPR001865), Ribosomal protein S2, conserved site (InterPro:IPR018130), Ribosomal protein S2, eukaryotic/archaeal (InterPro:IPR005707); BEST Arabidopsis thaliana protein match is: P40; structural constituent of ribosome (TAIR:AT1G72370.2); Has 2273 Blast hits to 2272 proteins in 737 species: Archae - 182; Bacteria - 816; Metazoa - 548; Fungi - 181; Plants - 133; Viruses - 0; Other Eukaryotes - 413 (source: NCBI BLink).  protein_id AT3G04770.2p  transcript_id AT3G04770.2  protein_id AT3G04770.2p  transcript_id AT3G04770.2  
At3g04780	chr3:001312975	0.0	C/1312975-1313013,1312710-1312796,1312315-1312438,1312096-1312144,1311949-1312006,1311807-1311853,1311636-1311713,1311447-1311495	AT3G04780.1  CDS  gene_syn F7O18.27, F7O18_27  function Encodes a protein with little sequence identity with any other protein of known structure or function. Part of this protein shows a 42% sequence identity with the C-terminal domain of the 32-kD human thioredoxin-like protein.  go_process cell redox homeostasis|GO:0045454||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin, core (InterPro:IPR015467), Protein of unknown function DUF1000 (InterPro:IPR010400); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25950.1); Has 462 Blast hits to 462 proteins in 145 species: Archae - 0; Bacteria - 0; Metazoa - 211; Fungi - 131; Plants - 47; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT3G04780.1p  transcript_id AT3G04780.1  protein_id AT3G04780.1p  transcript_id AT3G04780.1  
At3g04790	chr3:001313365	0.0	W/1313365-1314195	AT3G04790.1  CDS  gene_syn F7O18.28, F7O18_28  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_function ribose-5-phosphate isomerase activity|GO:0004751||IEA  go_process reductive pentose-phosphate cycle|GO:0019253|17059404|NAS  product ribose 5-phosphate isomerase-related  note ribose 5-phosphate isomerase-related; FUNCTIONS IN: ribose-5-phosphate isomerase activity; INVOLVED IN: defense response to bacterium, reductive pentose-phosphate cycle; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribose 5-phosphate isomerase (InterPro:IPR004788); BEST Arabidopsis thaliana protein match is: ribose-5-phosphate isomerase (TAIR:AT2G01290.1); Has 3164 Blast hits to 3164 proteins in 1122 species: Archae - 153; Bacteria - 1911; Metazoa - 90; Fungi - 101; Plants - 84; Viruses - 0; Other Eukaryotes - 825 (source: NCBI BLink).  protein_id AT3G04790.1p  transcript_id AT3G04790.1  protein_id AT3G04790.1p  transcript_id AT3G04790.1  
At3g04800	chr3:001314479	0.0	C/1314479-1315045	AT3G04800.1  CDS  gene_syn ATTIM23-3, F7O18.29  gene ATTIM23-3  go_component mitochondrial inner membrane|GO:0005743||IEA  go_process protein transport|GO:0015031||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744||ISS  go_process protein transport|GO:0015031||ISS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product ATTIM23-3; P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter  note ATTIM23-3; FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: mitochondrial inner membrane, mitochondrial inner membrane presequence translocase complex; EXPRESSED IN: embryo, cotyledon, flower, root, leaf; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Mitochondrial import inner membrane translocase, subunit Tim17/22 (InterPro:IPR003397); BEST Arabidopsis thaliana protein match is: ATTIM23-1 (TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 23); P-P-bond-hydrolysis-driven protein transmembrane transporter (TAIR:AT1G17530.1); Has 272 Blast hits to 272 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 68; Plants - 66; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT3G04800.1p  transcript_id AT3G04800.1  protein_id AT3G04800.1p  transcript_id AT3G04800.1  
At3g04810	chr3:001318096	0.0	W/1318096-1318181,1318283-1318349,1318461-1318526,1318615-1318661,1318767-1318812,1318898-1318978,1319063-1319105,1319200-1319249,1319331-1319412,1319505-1319554,1319641-1319714,1319792-1319843,1319937-1320338,1320427-1321101	AT3G04810.1  CDS  gene_syn ATNEK2, NIMA-RELATED KINASE 2, NIMA-RELATED KINASE2, T9J14.24, T9J14_24  gene ATNEK2  function Encodes AtNek2, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes.  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product ATNEK2 (NIMA-RELATED KINASE 2); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note NIMA-RELATED KINASE 2 (ATNEK2); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATNEK3 (NIMA-RELATED KINASE3); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G28290.1); Has 90923 Blast hits to 89275 proteins in 2904 species: Archae - 52; Bacteria - 8018; Metazoa - 39338; Fungi - 8130; Plants - 17619; Viruses - 448; Other Eukaryotes - 17318 (source: NCBI BLink).  protein_id AT3G04810.1p  transcript_id AT3G04810.1  protein_id AT3G04810.1p  transcript_id AT3G04810.1  
At3g04810	chr3:001318096	0.0	W/1318096-1318181,1318283-1318349,1318461-1318526,1318615-1318661,1318767-1318812,1318898-1318978,1319063-1319105,1319200-1319249,1319331-1319412,1319505-1319554,1319641-1319714,1319792-1319843,1319937-1320338,1320427-1321101	AT3G04810.2  CDS  gene_syn ATNEK2, NIMA-RELATED KINASE 2, NIMA-RELATED KINASE2, T9J14.24, T9J14_24  gene ATNEK2  function Encodes AtNek2, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes.  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product ATNEK2 (NIMA-RELATED KINASE 2); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note NIMA-RELATED KINASE 2 (ATNEK2); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATNEK3 (NIMA-RELATED KINASE3); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G28290.1); Has 90923 Blast hits to 89275 proteins in 2904 species: Archae - 52; Bacteria - 8018; Metazoa - 39338; Fungi - 8130; Plants - 17619; Viruses - 448; Other Eukaryotes - 17318 (source: NCBI BLink).  protein_id AT3G04810.2p  transcript_id AT3G04810.2  protein_id AT3G04810.2p  transcript_id AT3G04810.2  
At3g04820	chr3:001325759	0.0	C/1325759-1325949,1325573-1325654,1325279-1325479,1324972-1325186,1324640-1324712,1324479-1324535,1324321-1324400,1324175-1324237,1323923-1324010,1323661-1323763,1323434-1323537,1323276-1323349,1323069-1323133,1322798-1322973,1322486-1322553,1322339-1322399,1322180-1322217,1322010-1322078,1321606-1321918,1321453-1321479	AT3G04820.1  CDS  gene_syn T9J14.23, T9J14_23  go_process pseudouridine synthesis|GO:0001522||IEA  go_process tRNA processing|GO:0008033||IEA  go_process tRNA pseudouridine synthesis|GO:0031119||IEA  go_function pseudouridine synthase activity|GO:0009982|18599582|TAS  product pseudouridine synthase  note pseudouridine synthase; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: tRNA processing, pseudouridine synthesis, tRNA pseudouridine synthesis; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA pseudouridine synthase D (InterPro:IPR001656), tRNA pseudouridine synthase D, eukaryotic (InterPro:IPR017091), tRNA pseudouridine synthase D, core (InterPro:IPR011760); Has 1538 Blast hits to 1478 proteins in 609 species: Archae - 166; Bacteria - 781; Metazoa - 175; Fungi - 102; Plants - 30; Viruses - 0; Other Eukaryotes - 284 (source: NCBI BLink).  protein_id AT3G04820.1p  transcript_id AT3G04820.1  protein_id AT3G04820.1p  transcript_id AT3G04820.1  
At3g04830	chr3:001326289	0.0	W/1326289-1326475,1326898-1326962,1327198-1327246,1327714-1327808,1327893-1327978,1328078-1328137,1328265-1328346,1328755-1328868,1328959-1329132	AT3G04830.1  CDS  gene_syn T9J14.22, T9J14_22  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT5G28220.1); Has 403 Blast hits to 397 proteins in 158 species: Archae - 23; Bacteria - 36; Metazoa - 173; Fungi - 71; Plants - 23; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT3G04830.1p  transcript_id AT3G04830.1  protein_id AT3G04830.1p  transcript_id AT3G04830.1  
At3g04830	chr3:001326289	0.0	W/1326289-1326475,1326898-1326962,1327210-1327246,1327714-1327808,1327893-1327978,1328078-1328137,1328265-1328346,1328755-1328868,1328959-1329132	AT3G04830.2  CDS  gene_syn T9J14.22, T9J14_22  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT5G28220.1); Has 379 Blast hits to 377 proteins in 155 species: Archae - 21; Bacteria - 28; Metazoa - 165; Fungi - 71; Plants - 23; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT3G04830.2p  transcript_id AT3G04830.2  protein_id AT3G04830.2p  transcript_id AT3G04830.2  
At3g04840	chr3:001329751	0.0	W/1329751-1329761,1329858-1329905,1330039-1330144,1330384-1330521,1330631-1330816,1331033-1331233,1331320-1331418	AT3G04840.1  CDS  gene_syn T9J14.21, T9J14_21  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S3A (RPS3aA)  note 40S ribosomal protein S3A (RPS3aA); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane, chloroplast; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S3Ae, conserved site (InterPro:IPR018281), Ribosomal protein S3Ae (InterPro:IPR001593); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S3A (RPS3aB) (TAIR:AT4G34670.1); Has 943 Blast hits to 938 proteins in 297 species: Archae - 150; Bacteria - 1; Metazoa - 369; Fungi - 110; Plants - 126; Viruses - 0; Other Eukaryotes - 187 (source: NCBI BLink).  protein_id AT3G04840.1p  transcript_id AT3G04840.1  protein_id AT3G04840.1p  transcript_id AT3G04840.1  
At3g04850	chr3:001335798	0.0	C/1335798-1335851,1335243-1335415,1334479-1335142,1333758-1334185,1333590-1333664,1333027-1333207,1332785-1332880,1332623-1332689,1332466-1332544,1332269-1332371	AT3G04850.1  CDS  gene_syn T9J14.20, T9J14_20  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product tesmin/TSO1-like CXC domain-containing protein  note tesmin/TSO1-like CXC domain-containing protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: Tesmin/TSO1-like, CXC (InterPro:IPR005172); BEST Arabidopsis thaliana protein match is: TCX2 (TESMIN/TSO1-LIKE CXC 2); transcription factor (TAIR:AT4G14770.1); Has 1020 Blast hits to 498 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 400; Fungi - 0; Plants - 195; Viruses - 0; Other Eukaryotes - 425 (source: NCBI BLink).  protein_id AT3G04850.1p  transcript_id AT3G04850.1  protein_id AT3G04850.1p  transcript_id AT3G04850.1  
At3g04854	chr3:001337267	0.0	W/1337267-1337377	AT3G04854.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G04854.1p  transcript_id AT3G04854.1  protein_id AT3G04854.1p  transcript_id AT3G04854.1  
At3g04855	chr3:001337786	0.0	C/1337786-1337920	AT3G04855.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G04855.1p  transcript_id AT3G04855.1  protein_id AT3G04855.1p  transcript_id AT3G04855.1  
At3g04860	chr3:001339349	0.0	C/1339349-1340218	AT3G04860.1  CDS  gene_syn T9J14.19, T9J14_19  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF868, plant (InterPro:IPR008586); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28150.1); Has 144 Blast hits to 143 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G04860.1p  transcript_id AT3G04860.1  protein_id AT3G04860.1p  transcript_id AT3G04860.1  
At3g04870	chr3:001342842	0.0	W/1342842-1342959,1343520-1343644,1343722-1343856,1343941-1344013,1344083-1344156,1344339-1344443,1344523-1344767,1344856-1344943,1345090-1345289,1345385-1345513,1345597-1345669,1345749-1345913,1346043-1346189	AT3G04870.1  CDS  gene_syn PDE181, PIGMENT DEFECTIVE EMBRYO 181, PRE ZETA-CAROTENE DESATURASE PRECURSOR, T9J14.18, ZDS, ZETA-CAROTENE DESATURASE  gene ZDS  function Involved in the biosynthesis of carotenes and xanthophylls, reduces zeta-carotene to lycopene.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process carotene biosynthetic process|GO:0016120|9914519|IDA  go_function carotene 7,8-desaturase activity|GO:0016719|9914519|IDA  product ZDS (ZETA-CAROTENE DESATURASE); carotene 7,8-desaturase  note ZETA-CAROTENE DESATURASE (ZDS); FUNCTIONS IN: carotene 7,8-desaturase activity; INVOLVED IN: carotene biosynthetic process; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), Adrenodoxin reductase (InterPro:IPR000759), Carotene 7,8-desaturase (InterPro:IPR014103); BEST Arabidopsis thaliana protein match is: PDS3 (PHYTOENE DESATURASE 3); phytoene dehydrogenase (TAIR:AT4G14210.1); Has 2702 Blast hits to 2689 proteins in 546 species: Archae - 28; Bacteria - 1184; Metazoa - 228; Fungi - 38; Plants - 348; Viruses - 2; Other Eukaryotes - 874 (source: NCBI BLink).  protein_id AT3G04870.1p  transcript_id AT3G04870.1  protein_id AT3G04870.1p  transcript_id AT3G04870.1  
At3g04870	chr3:001342842	0.0	W/1342842-1342959,1343520-1343644,1343722-1343856,1343941-1344013,1344083-1344156,1344339-1344443,1344523-1344767,1344856-1344943,1345090-1345289,1345385-1345513,1345597-1345669,1345749-1345913,1346043-1346189	AT3G04870.2  CDS  gene_syn PDE181, PIGMENT DEFECTIVE EMBRYO 181, PRE ZETA-CAROTENE DESATURASE PRECURSOR, T9J14.18, ZDS, ZETA-CAROTENE DESATURASE  gene ZDS  function Involved in the biosynthesis of carotenes and xanthophylls, reduces zeta-carotene to lycopene.  go_component chloroplast|GO:0009507|18431481|IDA  go_process carotene biosynthetic process|GO:0016120|9914519|IDA  go_function carotene 7,8-desaturase activity|GO:0016719|9914519|IDA  product ZDS (ZETA-CAROTENE DESATURASE); carotene 7,8-desaturase  note ZETA-CAROTENE DESATURASE (ZDS); FUNCTIONS IN: carotene 7,8-desaturase activity; INVOLVED IN: carotene biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), Adrenodoxin reductase (InterPro:IPR000759), Carotene 7,8-desaturase (InterPro:IPR014103); BEST Arabidopsis thaliana protein match is: PDS3 (PHYTOENE DESATURASE 3); phytoene dehydrogenase (TAIR:AT4G14210.1); Has 2702 Blast hits to 2689 proteins in 546 species: Archae - 28; Bacteria - 1184; Metazoa - 228; Fungi - 38; Plants - 348; Viruses - 2; Other Eukaryotes - 874 (source: NCBI BLink).  protein_id AT3G04870.2p  transcript_id AT3G04870.2  protein_id AT3G04870.2p  transcript_id AT3G04870.2  
At3g04880	chr3:001346431	0.0	C/1346431-1347363	AT3G04880.1  CDS  gene_syn DNA-DAMAGE-REPAIR/TOLERATION 2, DRT102, T9J14.17, T9J14_17  gene DRT102  function encodes a novel protein involved in DNA repair from UV damage. Isolated by functional complementation of E. coli UV-sensitive mutants (UVR genes).  go_component nucleus|GO:0005634|14617066|IDA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process photoreactive repair|GO:0000719|8329681|IGI  go_process response to cold|GO:0009409|14617066|IEP  go_process response to UV|GO:0009411|8329681|IGI  product DRT102 (DNA-DAMAGE-REPAIR/TOLERATION 2)  note DNA-DAMAGE-REPAIR/TOLERATION 2 (DRT102); INVOLVED IN: response to UV, photoreactive repair, response to cold; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribose/galactose isomerase (InterPro:IPR003500), DNA-damage-repair/toleration protein, DRT102 (InterPro:IPR012100), Cupin 2, conserved barrel (InterPro:IPR013096), Cupin, RmlC-type (InterPro:IPR011051), RmlC-like jelly roll fold (InterPro:IPR014710); Has 3066 Blast hits to 3066 proteins in 758 species: Archae - 2; Bacteria - 1704; Metazoa - 0; Fungi - 47; Plants - 15; Viruses - 0; Other Eukaryotes - 1298 (source: NCBI BLink).  protein_id AT3G04880.1p  transcript_id AT3G04880.1  protein_id AT3G04880.1p  transcript_id AT3G04880.1  
At3g04890	chr3:001347708	0.0	W/1347708-1347758,1347832-1347980,1348072-1348157,1348251-1348316,1348504-1348586,1348669-1348715,1348801-1348879,1348958-1349062	AT3G04890.2  CDS  gene_syn T9J14.16, T9J14_16  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2358 (InterPro:IPR018790); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46100.1); Has 101 Blast hits to 101 proteins in 37 species: Archae - 0; Bacteria - 53; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G04890.2p  transcript_id AT3G04890.2  protein_id AT3G04890.2p  transcript_id AT3G04890.2  
At3g04890	chr3:001347708	0.0	W/1347708-1347758,1347832-1347980,1348072-1348157,1348251-1348316,1348504-1348586,1348669-1348715,1348801-1348879,1348977-1349066	AT3G04890.1  CDS  gene_syn T9J14.16, T9J14_16  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2358 (InterPro:IPR018790); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46100.1); Has 112 Blast hits to 112 proteins in 38 species: Archae - 0; Bacteria - 65; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G04890.1p  transcript_id AT3G04890.1  protein_id AT3G04890.1p  transcript_id AT3G04890.1  
At3g04900	chr3:001349302	0.0	C/1349302-1349928	AT3G04900.1  CDS  gene_syn T9J14.15, T9J14_15  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT3G06130.1); Has 132 Blast hits to 128 proteins in 28 species: Archae - 0; Bacteria - 3; Metazoa - 26; Fungi - 6; Plants - 93; Viruses - 1; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G04900.1p  transcript_id AT3G04900.1  protein_id AT3G04900.1p  transcript_id AT3G04900.1  
At3g04903	chr3:001350510	0.0	W/1350510-1350561,1350778-1350989	AT3G04903.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G04903.1p  transcript_id AT3G04903.1  protein_id AT3G04903.1p  transcript_id AT3G04903.1  
At3g04910	chr3:001355084	0.0	W/1355084-1355158,1355240-1355277,1355718-1355945,1356024-1356244,1356334-1356491,1356574-1357093,1357195-1358057	AT3G04910.1  CDS  gene_syn ATWNK1, T9J14.14, T9J14_14, WITH NO LYSINE (K) 1, WNK1, ZIK4  gene WNK1  function Serine/threonine protein kinase, whose transcription is regulated by circadian rhythm.  go_component membrane|GO:0016020|17432890|IDA  go_process protein amino acid phosphorylation|GO:0006468|12091722|IDA  go_process circadian rhythm|GO:0007623|12091722|IEP  go_function protein kinase activity|GO:0004672|12091722|IDA  go_function protein serine/threonine kinase activity|GO:0004674|12091722|ISS  go_function kinase activity|GO:0016301||ISS  product WNK1 (WITH NO LYSINE (K) 1); kinase/ protein kinase/ protein serine/threonine kinase  note WITH NO LYSINE (K) 1 (WNK1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation, circadian rhythm; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: WNK9; kinase/ protein kinase (TAIR:AT5G28080.2); Has 73581 Blast hits to 72921 proteins in 2056 species: Archae - 30; Bacteria - 5216; Metazoa - 31403; Fungi - 6409; Plants - 16172; Viruses - 346; Other Eukaryotes - 14005 (source: NCBI BLink).  protein_id AT3G04910.1p  transcript_id AT3G04910.1  protein_id AT3G04910.1p  transcript_id AT3G04910.1  
At3g04910	chr3:001355151	0.0	W/1355151-1355158,1355240-1355275,1355718-1355945,1356024-1356244,1356334-1356491,1356574-1357093,1357195-1358057	AT3G04910.2  CDS  gene_syn ATWNK1, T9J14.14, T9J14_14, WITH NO LYSINE (K) 1, WNK1, ZIK4  gene WNK1  function Serine/threonine protein kinase, whose transcription is regulated by circadian rhythm.  go_component membrane|GO:0016020|17432890|IDA  go_process protein amino acid phosphorylation|GO:0006468|12091722|IDA  go_process circadian rhythm|GO:0007623|12091722|IEP  go_function protein kinase activity|GO:0004672|12091722|IDA  go_function protein serine/threonine kinase activity|GO:0004674|12091722|ISS  go_function kinase activity|GO:0016301||ISS  product WNK1 (WITH NO LYSINE (K) 1); kinase/ protein kinase/ protein serine/threonine kinase  note WITH NO LYSINE (K) 1 (WNK1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation, circadian rhythm; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: WNK9; kinase/ protein kinase (TAIR:AT5G28080.2); Has 71372 Blast hits to 70729 proteins in 1929 species: Archae - 26; Bacteria - 4753; Metazoa - 30587; Fungi - 6255; Plants - 15822; Viruses - 341; Other Eukaryotes - 13588 (source: NCBI BLink).  protein_id AT3G04910.2p  transcript_id AT3G04910.2  protein_id AT3G04910.2p  transcript_id AT3G04910.2  
At3g04910	chr3:001356061	0.0	W/1356061-1356244,1356334-1356491,1356574-1357093,1357195-1358057	AT3G04910.3  CDS  gene_syn ATWNK1, T9J14.14, T9J14_14, WITH NO LYSINE (K) 1, WNK1, ZIK4  gene WNK1  function Serine/threonine protein kinase, whose transcription is regulated by circadian rhythm.  go_component membrane|GO:0016020|17432890|IDA  go_process protein amino acid phosphorylation|GO:0006468|12091722|IDA  go_process circadian rhythm|GO:0007623|12091722|IEP  go_function protein kinase activity|GO:0004672|12091722|IDA  go_function protein serine/threonine kinase activity|GO:0004674|12091722|ISS  go_function kinase activity|GO:0016301||ISS  product WNK1 (WITH NO LYSINE (K) 1); kinase/ protein kinase/ protein serine/threonine kinase  note WITH NO LYSINE (K) 1 (WNK1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation, circadian rhythm; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: WNK9; kinase/ protein kinase (TAIR:AT5G28080.2); Has 61117 Blast hits to 60597 proteins in 1732 species: Archae - 20; Bacteria - 3681; Metazoa - 25585; Fungi - 5449; Plants - 14446; Viruses - 269; Other Eukaryotes - 11667 (source: NCBI BLink).  protein_id AT3G04910.3p  transcript_id AT3G04910.3  protein_id AT3G04910.3p  transcript_id AT3G04910.3  
At3g04920	chr3:001360989	0.0	W/1360989-1361060,1361360-1361401,1361495-1361665,1361863-1361949,1362036-1362065	AT3G04920.1  CDS  gene_syn T9J14.13, T9J14_13  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_process translation|GO:0006412||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S24 (RPS24A)  note 40S ribosomal protein S24 (RPS24A); FUNCTIONS IN: structural constituent of ribosome, nucleotide binding; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S24e (InterPro:IPR001976), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ribosomal S24e conserved site (InterPro:IPR018098); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S24 (RPS24B) (TAIR:AT5G28060.1); Has 643 Blast hits to 643 proteins in 254 species: Archae - 56; Bacteria - 0; Metazoa - 305; Fungi - 103; Plants - 74; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT3G04920.1p  transcript_id AT3G04920.1  protein_id AT3G04920.1p  transcript_id AT3G04920.1  
At3g04930	chr3:001363029	0.0	W/1363029-1364399	AT3G04930.1  CDS  gene_syn T9J14.12, T9J14_12  go_function transcription regulator activity|GO:0030528|12535344|TAS  product transcription regulator  note transcription regulator; FUNCTIONS IN: transcription regulator activity; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: transcription regulator (TAIR:AT5G28040.1); Has 231 Blast hits to 227 proteins in 38 species: Archae - 1; Bacteria - 18; Metazoa - 23; Fungi - 4; Plants - 160; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT3G04930.1p  transcript_id AT3G04930.1  protein_id AT3G04930.1p  transcript_id AT3G04930.1  
At3g04940	chr3:001365681	0.0	W/1365681-1365722,1365831-1365940,1366058-1366115,1366204-1366467,1366549-1366686,1366761-1366812,1366925-1367004,1367104-1367163,1367242-1367322,1367419-1367508	AT3G04940.1  CDS  gene_syn ATCYSD1, CYSD1, CYSTEINE SYNTHASE, CYSTEINE SYNTHASE D1, T9J14.11, T9J14_11  gene CYSD1  function Encodes cysteine synthase CysD1.  go_process cysteine biosynthetic process|GO:0019344|10889265|IDA  go_process cysteine biosynthetic process|GO:0019344||ISS  go_function cysteine synthase activity|GO:0004124|10845460|IMP  go_function cysteine synthase activity|GO:0004124|10889265|IDA  go_function cysteine synthase activity|GO:0004124||ISS  product CYSD1 (CYSTEINE SYNTHASE D1); cysteine synthase  note CYSTEINE SYNTHASE D1 (CYSD1); FUNCTIONS IN: cysteine synthase activity; INVOLVED IN: cysteine biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (InterPro:IPR001216), Cysteine synthase A (InterPro:IPR005859), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Cysteine synthase K/M (InterPro:IPR005856); BEST Arabidopsis thaliana protein match is: cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative (TAIR:AT5G28030.2); Has 13112 Blast hits to 13094 proteins in 1486 species: Archae - 223; Bacteria - 7446; Metazoa - 338; Fungi - 401; Plants - 356; Viruses - 0; Other Eukaryotes - 4348 (source: NCBI BLink).  protein_id AT3G04940.1p  transcript_id AT3G04940.1  protein_id AT3G04940.1p  transcript_id AT3G04940.1  
At3g04943	chr3:001368621	0.0	C/1368621-1368678,1368248-1368435	AT3G04943.1  CDS  gene_syn LCR41, Low-molecular-weight cysteine-rich 41  gene LCR41  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR41 (Low-molecular-weight cysteine-rich 41)  note Low-molecular-weight cysteine-rich 41 (LCR41); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: LCR42 (Low-molecular-weight cysteine-rich 42) (TAIR:AT3G23165.1); Has 9 Blast hits to 9 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G04943.1p  transcript_id AT3G04943.1  protein_id AT3G04943.1p  transcript_id AT3G04943.1  
At3g04945	chr3:001369472	0.0	C/1369472-1369532,1369114-1369283	AT3G04945.1  CDS  gene_syn LCR18, Low-molecular-weight cysteine-rich 18  gene LCR18  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR18 (Low-molecular-weight cysteine-rich 18)  note Low-molecular-weight cysteine-rich 18 (LCR18); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: LCR39 (Low-molecular-weight cysteine-rich 39) (TAIR:AT3G23167.1); Has 9 Blast hits to 9 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G04945.1p  transcript_id AT3G04945.1  protein_id AT3G04945.1p  transcript_id AT3G04945.1  
At3g04950	chr3:001371786	0.0	W/1371786-1372035,1372131-1372279,1372440-1372601,1373023-1373138,1373282-1373300	AT3G04950.1  CDS  gene_syn T9J14.10, T9J14_10  product unknown protein  note unknown protein; Has 344 Blast hits to 344 proteins in 131 species: Archae - 0; Bacteria - 268; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT3G04950.1p  transcript_id AT3G04950.1  protein_id AT3G04950.1p  transcript_id AT3G04950.1  
At3g04960	chr3:001373819	0.0	W/1373819-1373940,1374074-1375769	AT3G04960.3  CDS  gene_syn T9J14.9, T9J14_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27980.1); Has 27850 Blast hits to 17496 proteins in 912 species: Archae - 343; Bacteria - 2025; Metazoa - 14177; Fungi - 1751; Plants - 993; Viruses - 45; Other Eukaryotes - 8516 (source: NCBI BLink).  protein_id AT3G04960.3p  transcript_id AT3G04960.3  protein_id AT3G04960.3p  transcript_id AT3G04960.3  
At3g04960	chr3:001374099	0.0	W/1374099-1375769	AT3G04960.1  CDS  gene_syn T9J14.9, T9J14_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27980.1); Has 26349 Blast hits to 16636 proteins in 881 species: Archae - 318; Bacteria - 1902; Metazoa - 13321; Fungi - 1606; Plants - 968; Viruses - 48; Other Eukaryotes - 8186 (source: NCBI BLink).  protein_id AT3G04960.1p  transcript_id AT3G04960.1  protein_id AT3G04960.1p  transcript_id AT3G04960.1  
At3g04960	chr3:001374255	0.0	W/1374255-1375769	AT3G04960.2  CDS  gene_syn T9J14.9, T9J14_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27980.1); Has 17810 Blast hits to 12112 proteins in 728 species: Archae - 198; Bacteria - 1231; Metazoa - 8565; Fungi - 1136; Plants - 665; Viruses - 38; Other Eukaryotes - 5977 (source: NCBI BLink).  protein_id AT3G04960.2p  transcript_id AT3G04960.2  protein_id AT3G04960.2p  transcript_id AT3G04960.2  
At3g04970	chr3:001376240	0.0	W/1376240-1376388,1376481-1376574,1376707-1376801,1376895-1377062,1377150-1377222,1377322-1377374,1377486-1377577,1377689-1377741,1377837-1377962,1378049-1378339	AT3G04970.1  CDS  gene_syn T9J14.8, T9J14_8  go_component endomembrane system|GO:0012505||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc finger (DHHC type) family protein  note zinc finger (DHHC type) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: zinc finger (DHHC type) family protein (TAIR:AT3G48760.1); Has 3952 Blast hits to 3950 proteins in 184 species: Archae - 0; Bacteria - 0; Metazoa - 1937; Fungi - 528; Plants - 399; Viruses - 0; Other Eukaryotes - 1088 (source: NCBI BLink).  protein_id AT3G04970.1p  transcript_id AT3G04970.1  protein_id AT3G04970.1p  transcript_id AT3G04970.1  
At3g04970	chr3:001376240	0.0	W/1376240-1376388,1376481-1376574,1376707-1376801,1376895-1377062,1377150-1377222,1377322-1377374,1377486-1377577,1377689-1377741,1377837-1378010	AT3G04970.2  CDS  gene_syn T9J14.8, T9J14_8  go_component endomembrane system|GO:0012505||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc finger (DHHC type) family protein  note zinc finger (DHHC type) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: receptor/ zinc ion binding (TAIR:AT4G24630.1); Has 3949 Blast hits to 3947 proteins in 184 species: Archae - 0; Bacteria - 0; Metazoa - 1937; Fungi - 528; Plants - 398; Viruses - 0; Other Eukaryotes - 1086 (source: NCBI BLink).  protein_id AT3G04970.2p  transcript_id AT3G04970.2  protein_id AT3G04970.2p  transcript_id AT3G04970.2  
At3g04980	chr3:001378684	0.0	C/1378684-1382181	AT3G04980.1  CDS  gene_syn T9J14.7, T9J14_7  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT5G27240.1); Has 17503 Blast hits to 16003 proteins in 1894 species: Archae - 98; Bacteria - 4696; Metazoa - 4569; Fungi - 1440; Plants - 1424; Viruses - 39; Other Eukaryotes - 5237 (source: NCBI BLink).  protein_id AT3G04980.1p  transcript_id AT3G04980.1  protein_id AT3G04980.1p  transcript_id AT3G04980.1  
At3g04990	chr3:001383996	0.0	C/1383996-1384679	AT3G04990.1  CDS  gene_syn T9J14.6, T9J14_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: protein transport protein-related (TAIR:AT5G27220.1); Has 25210 Blast hits to 13961 proteins in 883 species: Archae - 495; Bacteria - 2293; Metazoa - 12493; Fungi - 1564; Plants - 769; Viruses - 75; Other Eukaryotes - 7521 (source: NCBI BLink).  protein_id AT3G04990.1p  transcript_id AT3G04990.1  protein_id AT3G04990.1p  transcript_id AT3G04990.1  
At3g04997	chr3:001386498	0.0	C/1386498-1386629	AT3G04997.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G04997.1p  transcript_id AT3G04997.1  protein_id AT3G04997.1p  transcript_id AT3G04997.1  
At3g05000	chr3:001388546	0.0	C/1388546-1388697,1387955-1388072,1387650-1387872,1387444-1387472	AT3G05000.1  CDS  gene_syn T9J14.5, T9J14_5  go_component cellular_component|GO:0005575||ND  go_process pollen tube development|GO:0048868|19237690|IMP  go_function transporter activity|GO:0005215||ISS  product transport protein particle (TRAPP) component Bet3 family protein  note transport protein particle (TRAPP) component Bet3 family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: pollen tube development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transport protein particle (TRAPP) component (InterPro:IPR007194); Has 331 Blast hits to 331 proteins in 128 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 94; Plants - 35; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT3G05000.1p  transcript_id AT3G05000.1  protein_id AT3G05000.1p  transcript_id AT3G05000.1  
At3g05010	chr3:001389603	0.0	W/1389603-1389887,1390194-1390385,1390580-1390742,1390848-1390950,1391052-1391133,1391385-1391462	AT3G05010.1  CDS  gene_syn T9J14.4, T9J14_4  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product transmembrane protein, putative  note transmembrane protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function, transmembrane-40 (InterPro:IPR018781); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27210.1); Has 103 Blast hits to 103 proteins in 34 species: Archae - 0; Bacteria - 4; Metazoa - 71; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G05010.1p  transcript_id AT3G05010.1  protein_id AT3G05010.1p  transcript_id AT3G05010.1  
At3g05020	chr3:001392831	0.0	C/1392831-1392878,1392269-1392385,1392066-1392188,1391863-1391988	AT3G05020.1  CDS  gene_syn ACP, ACP1, ACYL CARRIER PROTEIN, T9J14.3, T9J14_3, acyl carrier protein 1  gene ACP1  function encodes an acyl carrier protein expressed in leaves, roots, and dry seeds. Protein is not regulated by light.  go_component chloroplast|GO:0009507|18431481|IDA  go_process fatty acid biosynthetic process|GO:0006633|12011361|TAS  go_function acyl carrier activity|GO:0000036|2922299|TAS  go_function acyl carrier activity|GO:0000036||IDA  product ACP1 (acyl carrier protein 1); acyl carrier  note acyl carrier protein 1 (ACP1); FUNCTIONS IN: acyl carrier activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phosphopantetheine-binding (InterPro:IPR006163), Acyl carrier protein (ACP) (InterPro:IPR003231), Acyl carrier protein-like (InterPro:IPR009081), Phosphopantetheine attachment site (InterPro:IPR006162); BEST Arabidopsis thaliana protein match is: ACP5 (acyl carrier protein 5); acyl carrier (TAIR:AT5G27200.1); Has 4703 Blast hits to 4703 proteins in 1328 species: Archae - 0; Bacteria - 2503; Metazoa - 135; Fungi - 89; Plants - 244; Viruses - 2; Other Eukaryotes - 1730 (source: NCBI BLink).  protein_id AT3G05020.1p  transcript_id AT3G05020.1  protein_id AT3G05020.1p  transcript_id AT3G05020.1  
At3g05030	chr3:001395681	0.0	C/1395681-1395753,1395559-1395605,1395276-1395470,1395135-1395181,1394987-1395053,1394784-1394884,1394591-1394692,1394361-1394499,1394214-1394276,1394030-1394113,1393456-1393803	AT3G05030.2  CDS  gene_syn ATNHX2, NHX2, SODIUM HYDROGEN EXCHANGER 2, T9J14.2, T9J14_2  gene NHX2  function member of Sodium proton exchanger family  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812||IEA  go_process sodium ion transport|GO:0006814||IEA  go_process regulation of pH|GO:0006885||IEA  go_process sodium ion transport|GO:0006814||ISS  go_function sodium ion transmembrane transporter activity|GO:0015081||ISS  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product NHX2 (SODIUM HYDROGEN EXCHANGER 2); sodium ion transmembrane transporter/ sodium:hydrogen antiporter  note SODIUM HYDROGEN EXCHANGER 2 (NHX2); FUNCTIONS IN: sodium:hydrogen antiporter activity, sodium ion transmembrane transporter activity; INVOLVED IN: cation transport, sodium ion transport, regulation of pH; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger, conserved region (InterPro:IPR018422), Cation/H+ exchanger (InterPro:IPR006153), Na+/H+ exchanger, isoforms 1-4, conserved region (InterPro:IPR018407); BEST Arabidopsis thaliana protein match is: NHX1 (NA+/H+ EXCHANGER); protein binding / sodium ion transmembrane transporter/ sodium:hydrogen antiporter (TAIR:AT5G27150.1); Has 3221 Blast hits to 3213 proteins in 916 species: Archae - 19; Bacteria - 1879; Metazoa - 683; Fungi - 86; Plants - 279; Viruses - 0; Other Eukaryotes - 275 (source: NCBI BLink).  protein_id AT3G05030.2p  transcript_id AT3G05030.2  protein_id AT3G05030.2p  transcript_id AT3G05030.2  
At3g05030	chr3:001396614	0.0	C/1396614-1396784,1396364-1396482,1395837-1395934,1395681-1395740,1395559-1395605,1395276-1395470,1395135-1395181,1394987-1395053,1394784-1394884,1394591-1394692,1394361-1394499,1394214-1394276,1394030-1394113,1393456-1393803	AT3G05030.1  CDS  gene_syn ATNHX2, NHX2, SODIUM HYDROGEN EXCHANGER 2, T9J14.2, T9J14_2  gene NHX2  function member of Sodium proton exchanger family  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812||IEA  go_process sodium ion transport|GO:0006814||IEA  go_process regulation of pH|GO:0006885||IEA  go_process sodium ion transport|GO:0006814||ISS  go_function sodium ion transmembrane transporter activity|GO:0015081||ISS  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product NHX2 (SODIUM HYDROGEN EXCHANGER 2); sodium ion transmembrane transporter/ sodium:hydrogen antiporter  note SODIUM HYDROGEN EXCHANGER 2 (NHX2); FUNCTIONS IN: sodium:hydrogen antiporter activity, sodium ion transmembrane transporter activity; INVOLVED IN: cation transport, sodium ion transport, regulation of pH; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Na+/H+ exchanger, subfamily (InterPro:IPR004709), Cation/H+ exchanger, conserved region (InterPro:IPR018422), Cation/H+ exchanger (InterPro:IPR006153), Na+/H+ exchanger, isoforms 1-4, conserved region (InterPro:IPR018407), Na+/H+ exchanger, conserved region (InterPro:IPR018406); BEST Arabidopsis thaliana protein match is: NHX1 (NA+/H+ EXCHANGER); protein binding / sodium ion transmembrane transporter/ sodium:hydrogen antiporter (TAIR:AT5G27150.1); Has 3490 Blast hits to 3482 proteins in 955 species: Archae - 33; Bacteria - 2040; Metazoa - 718; Fungi - 86; Plants - 283; Viruses - 0; Other Eukaryotes - 330 (source: NCBI BLink).  protein_id AT3G05030.1p  transcript_id AT3G05030.1  protein_id AT3G05030.1p  transcript_id AT3G05030.1  
At3g05040	chr3:001407985	0.0	C/1407985-1408095,1407473-1407574,1407227-1407370,1407047-1407127,1406888-1406957,1406557-1406627,1406317-1406480,1406151-1406222,1405828-1406065,1405420-1405482,1405034-1405321,1404843-1404956,1404587-1404713,1404322-1404491,1404089-1404190,1403652-1403755,1403274-1403559,1402902-1403143,1402301-1402804,1401923-1402217,1401641-1401824,1401479-1401555	AT3G05040.1  CDS  gene_syn HASTY, HASTY 1, HST, HST1, T9J14.1, T9J14_1  gene HST  function Encodes member of importin/exportin family. Involved in timing of shoot maturation. Involved in miRNA transport. Mutants flower early and have small, curled leaves and reduced abundance of certain miRNA species.  go_component nuclear envelope|GO:0005635||NAS  go_process negative regulation of flower development|GO:0009910|9550721|IMP  go_process polarity specification of adaxial/abaxial axis|GO:0009944|9550721|IMP  go_process leaf morphogenesis|GO:0009965|9550721|IMP  go_process pre-microRNA export from nucleus|GO:0035281|15851028|TAS  go_process root development|GO:0048364|12620976|IMP  go_process shoot development|GO:0048367|9550721|IMP  go_function nucleocytoplasmic transporter activity|GO:0005487||NAS  product HST (HASTY); nucleocytoplasmic transporter  note HASTY (HST); FUNCTIONS IN: nucleocytoplasmic transporter activity; INVOLVED IN: in 6 processes; LOCATED IN: nuclear envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Exportin-1/Importin-beta-like (InterPro:IPR013598), Armadillo-type fold (InterPro:IPR016024); Has 361 Blast hits to 291 proteins in 97 species: Archae - 0; Bacteria - 0; Metazoa - 174; Fungi - 108; Plants - 61; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT3G05040.1p  transcript_id AT3G05040.1  protein_id AT3G05040.1p  transcript_id AT3G05040.1  
At3g05050	chr3:001410766	0.0	C/1410766-1411194,1410396-1410680,1409998-1410315,1409678-1409914,1409391-1409491,1409164-1409281,1408789-1409082	AT3G05050.1  CDS  gene_syn T12H1.1, T12H1_1  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G54610.3); Has 90139 Blast hits to 88982 proteins in 3081 species: Archae - 43; Bacteria - 7394; Metazoa - 39838; Fungi - 8366; Plants - 17448; Viruses - 415; Other Eukaryotes - 16635 (source: NCBI BLink).  protein_id AT3G05050.1p  transcript_id AT3G05050.1  protein_id AT3G05050.1p  transcript_id AT3G05050.1  
At3g05060	chr3:001415484	0.0	C/1415484-1415564,1415354-1415395,1415081-1415260,1414836-1415000,1414429-1414629,1413838-1414335,1413597-1413731,1413174-1413473	AT3G05060.1  CDS  function SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein  go_component nucleolus|GO:0005730|15496452|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product SAR DNA-binding protein, putative  note SAR DNA-binding protein, putative; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pre-mRNA processing ribonucleoprotein, binding region (InterPro:IPR002687), NOP5, N-terminal (InterPro:IPR012974), NOSIC (InterPro:IPR012976); BEST Arabidopsis thaliana protein match is: SAR DNA-binding protein, putative (TAIR:AT5G27120.1); Has 41988 Blast hits to 16782 proteins in 895 species: Archae - 181; Bacteria - 2591; Metazoa - 18687; Fungi - 3907; Plants - 1396; Viruses - 256; Other Eukaryotes - 14970 (source: NCBI BLink).  protein_id AT3G05060.1p  transcript_id AT3G05060.1  protein_id AT3G05060.1p  transcript_id AT3G05060.1  
At3g05070	chr3:001416480	0.0	W/1416480-1416607,1416905-1417037,1417154-1417268,1417475-1417533	AT3G05070.1  CDS  gene_syn T12H1.3, T12H1_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18 (InterPro:IPR013169); Has 221 Blast hits to 221 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 107; Fungi - 54; Plants - 17; Viruses - 9; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT3G05070.1p  transcript_id AT3G05070.1  protein_id AT3G05070.1p  transcript_id AT3G05070.1  
At3g05080	chr3:001418038	0.0	W/1418038-1418145	AT3G05080.1  CDS  gene_syn T12H1.4, T12H1_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G05080.1p  transcript_id AT3G05080.1  protein_id AT3G05080.1p  transcript_id AT3G05080.1  
At3g05090	chr3:001422625	0.0	C/1422625-1422723,1422282-1422440,1422087-1422152,1421896-1421985,1421468-1421758,1421265-1421362,1421108-1421143,1420908-1421028,1420579-1420815,1420402-1420497,1420242-1420307,1420053-1420091,1419824-1419958,1419272-1419624,1419035-1419128,1418774-1418956,1418573-1418671	AT3G05090.1  CDS  gene_syn T12H1.5, T12H1_5  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: PP1/PP2A phosphatases pleiotropic regulator 2 (PRL2) (TAIR:AT3G16650.1); Has 44294 Blast hits to 19880 proteins in 546 species: Archae - 42; Bacteria - 4731; Metazoa - 20434; Fungi - 9164; Plants - 3848; Viruses - 3; Other Eukaryotes - 6072 (source: NCBI BLink).  protein_id AT3G05090.1p  transcript_id AT3G05090.1  protein_id AT3G05090.1p  transcript_id AT3G05090.1  
At3g05090	chr3:001422625	0.0	C/1422625-1422723,1422282-1422440,1422087-1422152,1421896-1421985,1421468-1421758,1421265-1421362,1421108-1421143,1420908-1421028,1420579-1420815,1420402-1420497,1420242-1420307,1420053-1420091,1419824-1419958,1419272-1419624,1419035-1419128,1418774-1418956,1418573-1418671	AT3G05090.2  CDS  gene_syn T12H1.5, T12H1_5  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: PP1/PP2A phosphatases pleiotropic regulator 2 (PRL2) (TAIR:AT3G16650.1); Has 44294 Blast hits to 19880 proteins in 546 species: Archae - 42; Bacteria - 4731; Metazoa - 20434; Fungi - 9164; Plants - 3848; Viruses - 3; Other Eukaryotes - 6072 (source: NCBI BLink).  protein_id AT3G05090.2p  transcript_id AT3G05090.2  protein_id AT3G05090.2p  transcript_id AT3G05090.2  
At3g05100	chr3:001424155	0.0	W/1424155-1424510,1425013-1425667	AT3G05100.1  CDS  gene_syn T12H1.6, T12H1_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 12 (InterPro:IPR013217); Has 53 Blast hits to 53 proteins in 21 species: Archae - 2; Bacteria - 27; Metazoa - 0; Fungi - 3; Plants - 11; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT3G05100.1p  transcript_id AT3G05100.1  protein_id AT3G05100.1p  transcript_id AT3G05100.1  
At3g05110	chr3:001427625	0.0	C/1427625-1427719,1427317-1427451,1427015-1427229,1426297-1426970	AT3G05110.1  CDS  gene_syn T12H1.7, T12H1_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: pedicel, seed; EXPRESSED DURING: 4 anthesis, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04960.3); Has 6697 Blast hits to 3852 proteins in 353 species: Archae - 26; Bacteria - 401; Metazoa - 2424; Fungi - 404; Plants - 300; Viruses - 155; Other Eukaryotes - 2987 (source: NCBI BLink).  protein_id AT3G05110.1p  transcript_id AT3G05110.1  protein_id AT3G05110.1p  transcript_id AT3G05110.1  
At3g05120	chr3:001430682	0.0	W/1430682-1430720,1431289-1432287	AT3G05120.1  CDS  gene_syn ATGID1A, GA INSENSITIVE DWARF1A, GID1A, T12H1.8, T12H1_8  gene GID1A  function Encodes a gibberellin (GA) receptor ortholog of the rice GA receptor gene (OsGID1). Has GA-binding activity, showing higher affinity to GA4. Interacts with DELLA proteins in vivo in the presence of GA4. The DELLA region alone can interact with GID1A in GA-dependent manner in a Y2H assay.  go_function hydrolase activity|GO:0016787||IEA  go_component nucleus|GO:0005634|17416730|IDA  go_component cytoplasm|GO:0005737|17416730|IDA  go_process response to gibberellin stimulus|GO:0009739|17933900|IEP  go_process response to gibberellin stimulus|GO:0009739|18827182|IGI  go_process positive regulation of gibberellic acid mediated signaling|GO:0009939|17194763|IGI  go_process raffinose family oligosaccharide biosynthetic process|GO:0010325|16709201|IGI  go_process gibberellin-mediated signaling|GO:0010476|17521411|IGI  go_process floral organ morphogenesis|GO:0048444|17194763|IGI  product GID1A (GA INSENSITIVE DWARF1A); hydrolase  note GA INSENSITIVE DWARF1A (GID1A); FUNCTIONS IN: hydrolase activity; INVOLVED IN: raffinose family oligosaccharide biosynthetic process, floral organ morphogenesis, positive regulation of gibberellic acid mediated signaling, response to gibberellin stimulus, gibberellin-mediated signaling; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDXG, active site (InterPro:IPR002168), Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: GID1C (GA INSENSITIVE DWARF1C); hydrolase (TAIR:AT5G27320.1); Has 5287 Blast hits to 5278 proteins in 844 species: Archae - 47; Bacteria - 2794; Metazoa - 350; Fungi - 471; Plants - 650; Viruses - 3; Other Eukaryotes - 972 (source: NCBI BLink).  protein_id AT3G05120.1p  transcript_id AT3G05120.1  protein_id AT3G05120.1p  transcript_id AT3G05120.1  
At3g05130	chr3:001433475	0.0	C/1433475-1435379	AT3G05130.1  CDS  gene_syn T12H1.9, T12H1_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27330.1); Has 133049 Blast hits to 62616 proteins in 2140 species: Archae - 1785; Bacteria - 18047; Metazoa - 62890; Fungi - 9274; Plants - 4913; Viruses - 534; Other Eukaryotes - 35606 (source: NCBI BLink).  protein_id AT3G05130.1p  transcript_id AT3G05130.1  protein_id AT3G05130.1p  transcript_id AT3G05130.1  
At3g05140	chr3:001437779	0.0	C/1437779-1437800,1437232-1437645,1436880-1437131,1436555-1436792,1436343-1436478,1436095-1436244,1435817-1435987	AT3G05140.1  CDS  gene_syn RBK2, Rop Binding protein Kinases 2, T12H1.10, T12H1_10  gene RBK2  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_function kinase activity|GO:0016301||ISS  product RBK2 (Rop Binding protein Kinases 2); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note Rop Binding protein Kinases 2 (RBK2); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G18910.1); Has 76531 Blast hits to 75808 proteins in 2207 species: Archae - 29; Bacteria - 6784; Metazoa - 33291; Fungi - 5723; Plants - 17544; Viruses - 390; Other Eukaryotes - 12770 (source: NCBI BLink).  protein_id AT3G05140.1p  transcript_id AT3G05140.1  protein_id AT3G05140.1p  transcript_id AT3G05140.1  
At3g05150	chr3:001440216	0.0	W/1440216-1440371,1440485-1440547,1440646-1440735,1440862-1440921,1441026-1441091,1441228-1441293,1441533-1441608,1441733-1441797,1441904-1441996,1442071-1442151,1442234-1442318,1442413-1442522,1442603-1442662,1442761-1442814,1442902-1442961,1443052-1443166,1443249-1443361	AT3G05150.1  CDS  gene_syn T12H1.11, T12H1_11  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component nucleus|GO:0005634|16581911|IDA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product sugar transporter family protein  note sugar transporter family protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: nucleus, membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter, putative (TAIR:AT5G18840.1); Has 19221 Blast hits to 18758 proteins in 1171 species: Archae - 272; Bacteria - 7305; Metazoa - 4727; Fungi - 4354; Plants - 1507; Viruses - 0; Other Eukaryotes - 1056 (source: NCBI BLink).  protein_id AT3G05150.1p  transcript_id AT3G05150.1  protein_id AT3G05150.1p  transcript_id AT3G05150.1  
At3g05152	chr3:001443967	0.0	W/1443967-1445087	AT3G05152.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G05152.1  
At3g05155	chr3:001448647	0.0	W/1448647-1448778,1448932-1448994,1449097-1449186,1449282-1449341,1449419-1449484,1449578-1449643,1449721-1449796,1449914-1449978,1450081-1450173,1450379-1450450,1450552-1450636,1450748-1450791,1450916-1450987	AT3G05155.1  CDS  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_function transporter activity|GO:0005215||IEA  go_function substrate-specific transmembrane transporter activity|GO:0022891||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product sugar transporter, putative  note sugar transporter, putative; FUNCTIONS IN: substrate-specific transmembrane transporter activity, carbohydrate transmembrane transporter activity, transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter, putative (TAIR:AT3G05400.1); Has 15321 Blast hits to 15276 proteins in 1044 species: Archae - 214; Bacteria - 5280; Metazoa - 3910; Fungi - 4011; Plants - 1119; Viruses - 0; Other Eukaryotes - 787 (source: NCBI BLink).  protein_id AT3G05155.1p  transcript_id AT3G05155.1  protein_id AT3G05155.1p  transcript_id AT3G05155.1  
At3g05160	chr3:001456534	0.0	C/1456534-1456563,1456018-1456107,1455805-1455864,1455651-1455716,1455496-1455561,1455330-1455405,1455119-1455183,1454920-1455012,1454713-1454793,1454509-1454593,1454338-1454381,1454179-1454241,1454035-1454094,1453877-1453930,1453731-1453790,1453523-1453637,1453267-1453388	AT3G05160.2  CDS  gene_syn T12H1.12  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product sugar transporter, putative  note sugar transporter, putative; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: endomembrane system, integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter, putative (TAIR:AT3G05165.3); Has 16966 Blast hits to 16521 proteins in 1067 species: Archae - 211; Bacteria - 5791; Metazoa - 4414; Fungi - 4153; Plants - 1514; Viruses - 0; Other Eukaryotes - 883 (source: NCBI BLink).  protein_id AT3G05160.2p  transcript_id AT3G05160.2  protein_id AT3G05160.2p  transcript_id AT3G05160.2  
At3g05160	chr3:001456884	0.0	C/1456884-1456997,1456534-1456596,1456018-1456107,1455805-1455864,1455651-1455716,1455496-1455561,1455330-1455405,1455119-1455183,1454920-1455012,1454713-1454793,1454509-1454593,1454338-1454381,1454179-1454241,1454035-1454094,1453877-1453930,1453731-1453790,1453523-1453637,1453267-1453388	AT3G05160.1  CDS  gene_syn T12H1.12  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product sugar transporter, putative  note sugar transporter, putative; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Sugar/inositol transporter (InterPro:IPR003663), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter, putative (TAIR:AT3G05165.3); Has 17208 Blast hits to 16763 proteins in 1077 species: Archae - 213; Bacteria - 5986; Metazoa - 4429; Fungi - 4169; Plants - 1516; Viruses - 0; Other Eukaryotes - 895 (source: NCBI BLink).  protein_id AT3G05160.1p  transcript_id AT3G05160.1  protein_id AT3G05160.1p  transcript_id AT3G05160.1  
At3g05165	chr3:001462597	0.0	C/1462597-1462737,1462441-1462503,1461364-1461453,1461145-1461204,1460980-1461045,1460810-1460875,1460585-1460660,1460435-1460499,1460237-1460329,1460014-1460094,1459817-1459901,1459646-1459689,1459487-1459549,1459343-1459402,1459155-1459208,1458979-1459038,1458761-1458875,1458287-1458408	AT3G05165.1  CDS  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_function transporter activity|GO:0005215||IEA  go_function substrate-specific transmembrane transporter activity|GO:0022891||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product sugar transporter, putative  note sugar transporter, putative; FUNCTIONS IN: substrate-specific transmembrane transporter activity, carbohydrate transmembrane transporter activity, transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter, putative (TAIR:AT3G05160.1); Has 16568 Blast hits to 16222 proteins in 1080 species: Archae - 193; Bacteria - 5769; Metazoa - 4055; Fungi - 4164; Plants - 1495; Viruses - 0; Other Eukaryotes - 892 (source: NCBI BLink).  protein_id AT3G05165.1p  transcript_id AT3G05165.1  protein_id AT3G05165.1p  transcript_id AT3G05165.1  
At3g05165	chr3:001462597	0.0	C/1462597-1462737,1462441-1462503,1461364-1461453,1461145-1461204,1460980-1461045,1460810-1460875,1460585-1460660,1460435-1460499,1460237-1460329,1460014-1460094,1459817-1459901,1459646-1459689,1459487-1459549,1459343-1459402,1459155-1459208,1458979-1459038,1458761-1458875,1458287-1458408	AT3G05165.2  CDS  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_function transporter activity|GO:0005215||IEA  go_function substrate-specific transmembrane transporter activity|GO:0022891||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product sugar transporter, putative  note sugar transporter, putative; FUNCTIONS IN: substrate-specific transmembrane transporter activity, carbohydrate transmembrane transporter activity, transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Sugar/inositol transporter (InterPro:IPR003663), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter, putative (TAIR:AT3G05160.1); Has 16568 Blast hits to 16222 proteins in 1080 species: Archae - 193; Bacteria - 5769; Metazoa - 4055; Fungi - 4164; Plants - 1495; Viruses - 0; Other Eukaryotes - 892 (source: NCBI BLink).  protein_id AT3G05165.2p  transcript_id AT3G05165.2  protein_id AT3G05165.2p  transcript_id AT3G05165.2  
At3g05165	chr3:001462597	0.0	C/1462597-1462737,1462441-1462503,1461364-1461453,1461145-1461204,1460980-1461045,1460810-1460875,1460585-1460660,1460435-1460499,1460237-1460329,1460014-1460094,1459817-1459901,1459646-1459689,1459487-1459549,1459343-1459402,1459155-1459208,1458979-1459038,1458761-1458875,1458287-1458408	AT3G05165.3  CDS  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_function transporter activity|GO:0005215||IEA  go_function substrate-specific transmembrane transporter activity|GO:0022891||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product sugar transporter, putative  note sugar transporter, putative; FUNCTIONS IN: substrate-specific transmembrane transporter activity, carbohydrate transmembrane transporter activity, transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Sugar/inositol transporter (InterPro:IPR003663), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter, putative (TAIR:AT3G05160.1); Has 16568 Blast hits to 16222 proteins in 1080 species: Archae - 193; Bacteria - 5769; Metazoa - 4055; Fungi - 4164; Plants - 1495; Viruses - 0; Other Eukaryotes - 892 (source: NCBI BLink).  protein_id AT3G05165.3p  transcript_id AT3G05165.3  protein_id AT3G05165.3p  transcript_id AT3G05165.3  
At3g05165	chr3:001462597	0.0	C/1462597-1462737,1462441-1462503,1461364-1461453,1461145-1461204,1460980-1461045,1460810-1460875,1460585-1460660,1460435-1460499,1460237-1460329,1460014-1460094,1459817-1459901,1459646-1459689,1459487-1459549,1459343-1459402,1459155-1459208,1458979-1459038,1458808-1458875,1457598-1457766	AT3G05165.4  CDS  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_function transporter activity|GO:0005215||IEA  go_function substrate-specific transmembrane transporter activity|GO:0022891||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product sugar transporter, putative  note sugar transporter, putative; FUNCTIONS IN: substrate-specific transmembrane transporter activity, transporter activity, carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter, putative (TAIR:AT3G05160.1).  protein_id AT3G05165.4p  transcript_id AT3G05165.4  protein_id AT3G05165.4p  transcript_id AT3G05165.4  
At3g05170	chr3:001466738	0.0	W/1466738-1467185,1467717-1468219	AT3G05170.1  CDS  gene_syn T12H1.14, T12H1_14  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function catalytic activity|GO:0003824||ISS  product phosphoglycerate/bisphosphoglycerate mutase family protein  note phosphoglycerate/bisphosphoglycerate mutase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078), Phosphoglycerate/bisphosphoglycerate mutase (InterPro:IPR001345); BEST Arabidopsis thaliana protein match is: phosphoglycerate/bisphosphoglycerate mutase family protein (TAIR:AT1G08940.1); Has 587 Blast hits to 577 proteins in 200 species: Archae - 2; Bacteria - 258; Metazoa - 24; Fungi - 136; Plants - 42; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).  protein_id AT3G05170.1p  transcript_id AT3G05170.1  protein_id AT3G05170.1p  transcript_id AT3G05170.1  
At3g05180	chr3:001470274	0.0	C/1470274-1470529,1469712-1469912,1469439-1469605,1468995-1469265,1468599-1468843	AT3G05180.1  CDS  gene_syn T12H1.15, T12H1_15  go_component apoplast|GO:0048046|18538804|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: apoplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT1G54790.1); Has 1575 Blast hits to 1550 proteins in 73 species: Archae - 0; Bacteria - 32; Metazoa - 1; Fungi - 7; Plants - 1534; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G05180.1p  transcript_id AT3G05180.1  protein_id AT3G05180.1p  transcript_id AT3G05180.1  
At3g05190	chr3:001471457	0.0	W/1471457-1471534,1471823-1471921,1472002-1472073,1472168-1472260,1472347-1472484,1472571-1472629,1472715-1472817,1472896-1473084,1473181-1473281,1473368-1473422,1473509-1473595,1473692-1473743,1473846-1473931,1474026-1474079,1474166-1474249,1474357-1474428,1474511-1474591,1474699-1474734,1474939-1475067	AT3G05190.1  CDS  gene_syn T12H1.16, T12H1_16  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_function catalytic activity|GO:0003824||ISS  product aminotransferase class IV family protein  note aminotransferase class IV family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Aminotransferase, class IV, conserved site (InterPro:IPR018300); BEST Arabidopsis thaliana protein match is: aminotransferase class IV family protein (TAIR:AT5G27410.1); Has 9097 Blast hits to 9096 proteins in 1178 species: Archae - 99; Bacteria - 4133; Metazoa - 10; Fungi - 55; Plants - 190; Viruses - 0; Other Eukaryotes - 4610 (source: NCBI BLink).  protein_id AT3G05190.1p  transcript_id AT3G05190.1  protein_id AT3G05190.1p  transcript_id AT3G05190.1  
At3g05193	chr3:001476176	0.0	C/1476176-1476328	AT3G05193.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G05193.1p  transcript_id AT3G05193.1  protein_id AT3G05193.1p  transcript_id AT3G05193.1  
At3g05200	chr3:001477377	0.0	W/1477377-1478573	AT3G05200.1  CDS  gene_syn ATL6, T12H1.17, T12H1_17  gene ATL6  function Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6).  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process response to chitin|GO:0010200|17722694|IEP  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product ATL6; protein binding / zinc ion binding  note ATL6; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: response to chitin; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G27420.1); Has 6768 Blast hits to 6748 proteins in 221 species: Archae - 0; Bacteria - 0; Metazoa - 2270; Fungi - 529; Plants - 2721; Viruses - 48; Other Eukaryotes - 1200 (source: NCBI BLink).  protein_id AT3G05200.1p  transcript_id AT3G05200.1  protein_id AT3G05200.1p  transcript_id AT3G05200.1  
At3g05210	chr3:001479591	0.0	W/1479591-1479874,1480254-1480365,1480452-1480555,1480638-1480737,1480835-1480911,1481016-1481115,1481195-1481266,1481363-1481431,1481509-1481823	AT3G05210.1  CDS  gene_syn ERCC1, T12H1.18, T12H1_18, UV REPAIR DEFICIENT 7, UVR7  gene ERCC1  function encodes a homolog of human ERCC1 protein (yeast RAD10), which is a DNA repair endonuclease. Mutants are sensitive to UV-B and gamma radiation (G2 cell cycle phase arrest) and are defective in dark-repair of pyrimidine pyrimidone dimers. This protein incises the 5  end of damaged DNA, similar to ERCC1/RAD10.  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||IEA  go_process double-strand break repair via homologous recombination|GO:0000724|15255863|IMP  go_process base-excision repair|GO:0006284||ISS  go_process nucleotide-excision repair, preincision complex assembly|GO:0006294|15255863|IMP  go_process non-photoreactive DNA repair|GO:0010213|9383080|IMP  go_process response to UV-B|GO:0010224|9383080|IMP  go_process response to gamma radiation|GO:0010332|12554710|IMP  go_function 5 -flap endonuclease activity|GO:0017108|15255863|IMP  product ERCC1; 5 -flap endonuclease  note ERCC1; FUNCTIONS IN: 5 -flap endonuclease activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), DNA repair protein rad10 (InterPro:IPR004579), Helix-hairpin-helix motif (InterPro:IPR000445), RuvA domain 2-like (InterPro:IPR010994); Has 570 Blast hits to 365 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 113; Plants - 26; Viruses - 0; Other Eukaryotes - 275 (source: NCBI BLink).  protein_id AT3G05210.1p  transcript_id AT3G05210.1  protein_id AT3G05210.1p  transcript_id AT3G05210.1  
At3g05220	chr3:001488808	0.0	W/1488808-1488837,1488947-1489022,1489544-1491171	AT3G05220.1  CDS  gene_syn T12H1.19, T12H1_19  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT3G06130.1); Has 94403 Blast hits to 32943 proteins in 1457 species: Archae - 110; Bacteria - 18725; Metazoa - 39578; Fungi - 5365; Plants - 8399; Viruses - 1494; Other Eukaryotes - 20732 (source: NCBI BLink).  protein_id AT3G05220.1p  transcript_id AT3G05220.1  protein_id AT3G05220.1p  transcript_id AT3G05220.1  
At3g05220	chr3:001489735	0.0	W/1489735-1491171	AT3G05220.2  CDS  gene_syn T12H1.19, T12H1_19  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 90629 Blast hits to 31654 proteins in 1416 species: Archae - 110; Bacteria - 18600; Metazoa - 38914; Fungi - 5069; Plants - 6669; Viruses - 1451; Other Eukaryotes - 19816 (source: NCBI BLink).  protein_id AT3G05220.2p  transcript_id AT3G05220.2  protein_id AT3G05220.2p  transcript_id AT3G05220.2  
At3g05230	chr3:001492304	0.0	W/1492304-1492429,1492662-1492709,1492845-1492907,1493018-1493071,1493159-1493245,1493327-1493452	AT3G05230.1  CDS  gene_syn T12H1.20, T12H1_20  go_component cell wall|GO:0005618|15593128|IDA  go_process signal peptide processing|GO:0006465||IEA  go_function peptidase activity|GO:0008233||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process signal peptide processing|GO:0006465||ISS  product signal peptidase subunit family protein  note signal peptidase subunit family protein; FUNCTIONS IN: peptidase activity; INVOLVED IN: signal peptide processing; LOCATED IN: endoplasmic reticulum, cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Signal peptidase 22 kDa subunit (InterPro:IPR007653); BEST Arabidopsis thaliana protein match is: signal peptidase subunit family protein (TAIR:AT5G27430.1); Has 300 Blast hits to 300 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 90; Plants - 44; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT3G05230.1p  transcript_id AT3G05230.1  protein_id AT3G05230.1p  transcript_id AT3G05230.1  
At3g05230	chr3:001492304	0.0	W/1492304-1492429,1492662-1492709,1492845-1492907,1493018-1493071,1493159-1493250,1493333-1493360	AT3G05230.2  CDS  gene_syn T12H1.20, T12H1_20  go_component cell wall|GO:0005618|15593128|IDA  go_process signal peptide processing|GO:0006465||IEA  go_function peptidase activity|GO:0008233||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process signal peptide processing|GO:0006465||ISS  product signal peptidase subunit family protein  note signal peptidase subunit family protein; FUNCTIONS IN: peptidase activity; INVOLVED IN: signal peptide processing; LOCATED IN: endoplasmic reticulum, cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Signal peptidase 22 kDa subunit (InterPro:IPR007653); BEST Arabidopsis thaliana protein match is: signal peptidase subunit family protein (TAIR:AT5G27430.1); Has 285 Blast hits to 285 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 86; Plants - 44; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT3G05230.2p  transcript_id AT3G05230.2  protein_id AT3G05230.2p  transcript_id AT3G05230.2  
At3g05240	chr3:001494721	0.0	C/1494721-1495381,1493684-1494669	AT3G05240.1  CDS  gene_syn T12H1.21, T12H1_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G29760.1); Has 13623 Blast hits to 4943 proteins in 134 species: Archae - 0; Bacteria - 2; Metazoa - 56; Fungi - 88; Plants - 13232; Viruses - 0; Other Eukaryotes - 245 (source: NCBI BLink).  protein_id AT3G05240.1p  transcript_id AT3G05240.1  protein_id AT3G05240.1p  transcript_id AT3G05240.1  
At3g05250	chr3:001495635	0.0	W/1495635-1495752,1496039-1496133,1496213-1496292,1496384-1496439,1496646-1496758,1496882-1496943,1497075-1497387	AT3G05250.1  CDS  gene_syn T12H1.22, T12H1_22  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (TAIR:AT1G67180.1); Has 423 Blast hits to 420 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 211; Fungi - 17; Plants - 100; Viruses - 61; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT3G05250.1p  transcript_id AT3G05250.1  protein_id AT3G05250.1p  transcript_id AT3G05250.1  
At3g05260	chr3:001498806	0.0	C/1498806-1498919,1498255-1498628,1497809-1498167,1497665-1497687	AT3G05260.1  CDS  gene_syn T12H1.23, T12H1_23  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: seed; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: binding / catalytic/ oxidoreductase (TAIR:AT1G54870.1); Has 80754 Blast hits to 80610 proteins in 2221 species: Archae - 465; Bacteria - 44840; Metazoa - 4442; Fungi - 3990; Plants - 1473; Viruses - 7; Other Eukaryotes - 25537 (source: NCBI BLink).  protein_id AT3G05260.1p  transcript_id AT3G05260.1  protein_id AT3G05260.1p  transcript_id AT3G05260.1  
At3g05270	chr3:001502816	0.0	C/1502816-1502926,1502540-1502705,1501003-1502456,1500803-1500919	AT3G05270.1  CDS  gene_syn T12H1.24, T12H1_24  product unknown protein  note EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869, plant (InterPro:IPR008587); BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT1G77580.2); Has 97002 Blast hits to 49715 proteins in 2003 species: Archae - 1158; Bacteria - 12418; Metazoa - 49297; Fungi - 7501; Plants - 3801; Viruses - 453; Other Eukaryotes - 22374 (source: NCBI BLink).  protein_id AT3G05270.1p  transcript_id AT3G05270.1  protein_id AT3G05270.1p  transcript_id AT3G05270.1  
At3g05270	chr3:001502816	0.0	C/1502816-1502926,1502540-1502705,1501003-1502456,1500803-1500919	AT3G05270.2  CDS  gene_syn T12H1.24, T12H1_24  product unknown protein  note EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869, plant (InterPro:IPR008587); BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT1G77580.2); Has 97002 Blast hits to 49715 proteins in 2003 species: Archae - 1158; Bacteria - 12418; Metazoa - 49297; Fungi - 7501; Plants - 3801; Viruses - 453; Other Eukaryotes - 22374 (source: NCBI BLink).  protein_id AT3G05270.2p  transcript_id AT3G05270.2  protein_id AT3G05270.2p  transcript_id AT3G05270.2  
At3g05280	chr3:001505495	0.0	C/1505495-1505554,1505358-1505397,1504990-1505070,1504637-1504826,1504289-1504556,1503992-1504198	AT3G05280.1  CDS  gene_syn T12H1.25, T12H1_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane Yip1 family protein  note integral membrane Yip1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Yip1 domain (InterPro:IPR006977); BEST Arabidopsis thaliana protein match is: integral membrane Yip1 family protein (TAIR:AT5G27490.1); Has 381 Blast hits to 380 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 195; Fungi - 69; Plants - 47; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT3G05280.1p  transcript_id AT3G05280.1  protein_id AT3G05280.1p  transcript_id AT3G05280.1  
At3g05290	chr3:001507472	0.0	C/1507472-1507614,1507137-1507368,1506814-1506960,1506556-1506713,1506129-1506417	AT3G05290.1  CDS  gene_syn PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 1, PNC1, T12H1.26, T12H1_26  gene PNC1  function encodes a peroxisomal adenine nucleotide transporter, involved in fatty acid beta-oxidation during early stage of postgerminative growth.  go_component mitochondrial inner membrane|GO:0005743||ISS  go_component peroxisome|GO:0005777|19073762|IDA  go_process fatty acid beta-oxidation|GO:0006635|19073762|IMP  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_process ADP transport|GO:0015866|19073763|IDA  go_process ATP transport|GO:0015867|19073763|IDA  go_process indolebutyric acid metabolic process|GO:0080024|19073763|IMP  go_function ATP transmembrane transporter activity|GO:0005347|19073762|ISS  go_function ATP transmembrane transporter activity|GO:0005347|19073763|IDA  go_function ATP transmembrane transporter activity|GO:0005347|19073763|IGI  go_function binding|GO:0005488||ISS  go_function ADP transmembrane transporter activity|GO:0015217|19073762|ISS  go_function ADP transmembrane transporter activity|GO:0015217|19073763|IDA  product PNC1 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 1); ADP transmembrane transporter/ ATP transmembrane transporter/ binding  note PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 1 (PNC1); FUNCTIONS IN: binding, ADP transmembrane transporter activity, ATP transmembrane transporter activity; INVOLVED IN: in 7 processes; LOCATED IN: mitochondrial inner membrane, peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: PNC2 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 2); ADP transmembrane transporter/ ATP transmembrane transporter/ binding (TAIR:AT5G27520.1); Has 5265 Blast hits to 4760 proteins in 241 species: Archae - 0; Bacteria - 0; Metazoa - 2533; Fungi - 1506; Plants - 803; Viruses - 0; Other Eukaryotes - 423 (source: NCBI BLink).  protein_id AT3G05290.1p  transcript_id AT3G05290.1  protein_id AT3G05290.1p  transcript_id AT3G05290.1  
At3g05300	chr3:001508431	0.0	C/1508431-1508487,1508263-1508367,1508024-1508203	AT3G05300.1  CDS  gene_syn T12H1.27, T12H1_27  go_function catalytic activity|GO:0003824||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function zinc ion binding|GO:0008270||ISS  go_function hydrolase activity|GO:0016787||ISS  product cytidine/deoxycytidylate deaminase family protein  note cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: hydrolase activity, zinc ion binding, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193); BEST Arabidopsis thaliana protein match is: cytidine/deoxycytidylate deaminase family protein (TAIR:AT5G28050.2); Has 4258 Blast hits to 4258 proteins in 1160 species: Archae - 10; Bacteria - 2669; Metazoa - 22; Fungi - 13; Plants - 64; Viruses - 0; Other Eukaryotes - 1480 (source: NCBI BLink).  protein_id AT3G05300.1p  transcript_id AT3G05300.1  protein_id AT3G05300.1p  transcript_id AT3G05300.1  
At3g05310	chr3:001510160	0.0	W/1510160-1510371,1510766-1510898,1511023-1511172,1511272-1511448,1511532-1511786,1511881-1511949,1512035-1512090,1512172-1512253,1512328-1512891,1512976-1513156,1513234-1513301	AT3G05310.1  CDS  gene_syn MIRO3, T12H1.28, T12H1_28  gene MIRO3  function Encodes a protein with similarity to MIRO GTPases.  go_component intracellular|GO:0005622||IEA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_function GTP binding|GO:0005525||IEA  product MIRO3; GTP binding  note MIRO3; FUNCTIONS IN: GTP binding; INVOLVED IN: small GTPase mediated signal transduction; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF hand associated, type-1 (InterPro:IPR013566), Miro-like (InterPro:IPR013684), EF hand associated, type-2 (InterPro:IPR013567); BEST Arabidopsis thaliana protein match is: MIRO1 (Miro-related GTP-ase 1); GTP binding (TAIR:AT5G27540.2); Has 1499 Blast hits to 1495 proteins in 186 species: Archae - 0; Bacteria - 9; Metazoa - 812; Fungi - 170; Plants - 347; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink).  protein_id AT3G05310.1p  transcript_id AT3G05310.1  protein_id AT3G05310.1p  transcript_id AT3G05310.1  
At3g05320	chr3:001513558	0.0	C/1513558-1514895	AT3G05320.1  CDS  gene_syn T12H1.29, T12H1_29  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; Has 51 Blast hits to 51 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 2; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G05320.1p  transcript_id AT3G05320.1  protein_id AT3G05320.1p  transcript_id AT3G05320.1  
At3g05327	chr3:001518227	0.0	C/1518227-1518399,1517894-1518136,1517581-1517803	AT3G05327.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Negative regulatory factor PREG (InterPro:IPR012389), Cyclin-like (InterPro:IPR011028), Cyclin-related 2 (InterPro:IPR013922); BEST Arabidopsis thaliana protein match is: CYCP4;1 (cyclin p4;1); cyclin-dependent protein kinase (TAIR:AT2G44740.1); Has 846 Blast hits to 846 proteins in 152 species: Archae - 0; Bacteria - 16; Metazoa - 172; Fungi - 322; Plants - 130; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).  protein_id AT3G05327.1p  transcript_id AT3G05327.1  protein_id AT3G05327.1p  transcript_id AT3G05327.1  
At3g05330	chr3:001521070	0.0	C/1521070-1521159,1520587-1520729,1520411-1520469,1519162-1520204	AT3G05330.1  CDS  gene_syn A. THALIANA TAN1, ATN, ATTAN, T12H1.30, T12H1_30, TANGLED  gene ATN  function Encodes a protein with moderate sequence similarity to the maize microtubule-binding protein TANGLED1. A single base-pair deletion (-A) at position Chr3:1519176 in Columbia relative to the Landsberg erecta and Achkarren-2 ecotype (see ESTs DR378436 and CB26450) introduces a frame-shift and premature termination codon. The protein encoded from the Columbia gene is truncated by 29 amino acids relative to the Landsberg erecta and Achkarren-2 encoded proteins. Involved in the identification of the division plane during mitosis amd cytokinesis  go_component microtubule associated complex|GO:0005875|17964159|IDA  go_component preprophase band|GO:0009574|17964159|IDA  go_process phragmoplast formation|GO:0000914|17964159|IMP  go_process cytokinesis, initiation of separation|GO:0007108|17964159|IMP  go_function molecular_function|GO:0003674||ND  product ATN (TANGLED)  note TANGLED (ATN); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cytokinesis, initiation of separation, phragmoplast formation; LOCATED IN: microtubule associated complex, preprophase band; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein (TAIR:AT4G32420.2); Has 626 Blast hits to 404 proteins in 88 species: Archae - 0; Bacteria - 2; Metazoa - 474; Fungi - 28; Plants - 45; Viruses - 26; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT3G05330.1p  transcript_id AT3G05330.1  protein_id AT3G05330.1p  transcript_id AT3G05330.1  
At3g05345	chr3:001523647	0.0	C/1523647-1523847,1523370-1523450,1523267-1523304,1523068-1523147,1522859-1522939,1522667-1522775,1522449-1522593	AT3G05345.1  CDS  go_component chloroplast|GO:0009507||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_process biological_process|GO:0008150||ND  product heat shock protein binding  note heat shock protein binding; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT5G23240.1).  protein_id AT3G05345.1p  transcript_id AT3G05345.1  protein_id AT3G05345.1p  transcript_id AT3G05345.1  
At3g05340	chr3:001524071	0.0	C/1524071-1526047	AT3G05340.1  CDS  gene_syn T12H1.31, T12H1_31  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G25970.1); Has 13413 Blast hits to 4790 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 52; Fungi - 44; Plants - 13098; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).  protein_id AT3G05340.1p  transcript_id AT3G05340.1  protein_id AT3G05340.1p  transcript_id AT3G05340.1  
At3g05360	chr3:001530900	0.0	C/1530900-1533260	AT3G05360.1  CDS  gene_syn AtRLP30, F22F7.23, Receptor Like Protein 30  gene AtRLP30  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_process signal transduction|GO:0007165|11751054|IC  go_process defense response signaling pathway, resistance gene-independent|GO:0010204|18434605|IMP  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  go_function kinase activity|GO:0016301||ISS  product AtRLP30 (Receptor Like Protein 30); kinase/ protein binding  note Receptor Like Protein 30 (AtRLP30); FUNCTIONS IN: protein binding, kinase activity; INVOLVED IN: defense response signaling pathway, resistance gene-independent, response to cyclopentenone, signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP11 (Receptor Like Protein 11); protein binding (TAIR:AT1G71390.1); Has 64278 Blast hits to 20027 proteins in 814 species: Archae - 34; Bacteria - 4084; Metazoa - 20916; Fungi - 707; Plants - 33683; Viruses - 2; Other Eukaryotes - 4852 (source: NCBI BLink).  protein_id AT3G05360.1p  transcript_id AT3G05360.1  protein_id AT3G05360.1p  transcript_id AT3G05360.1  
At3g05350	chr3:001533517	0.0	C/1533517-1533843,1530131-1530256,1529909-1530028,1529530-1529805,1529238-1529410,1528910-1529164,1528528-1528679,1528234-1528424,1528014-1528122,1527771-1527925,1527597-1527689,1527366-1527446,1527103-1527177	AT3G05350.1  CDS  gene_syn T12H1.32, T12H1_32  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process cellular process|GO:0009987||IEA  go_function hydrolase activity|GO:0016787||IEA  go_process proteolysis|GO:0006508||ISS  go_function aminopeptidase activity|GO:0004177||ISS  product aminopeptidase/ hydrolase  note aminopeptidase/ hydrolase; FUNCTIONS IN: hydrolase activity, aminopeptidase activity; INVOLVED IN: proteolysis, cellular process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24, structural domain (InterPro:IPR000994), Creatinase (InterPro:IPR000587); BEST Arabidopsis thaliana protein match is: ATAPP1; N-1-naphthylphthalamic acid binding / aminopeptidase (TAIR:AT4G36760.1); Has 6842 Blast hits to 6836 proteins in 1396 species: Archae - 152; Bacteria - 3413; Metazoa - 283; Fungi - 194; Plants - 65; Viruses - 0; Other Eukaryotes - 2735 (source: NCBI BLink).  protein_id AT3G05350.1p  transcript_id AT3G05350.1  protein_id AT3G05350.1p  transcript_id AT3G05350.1  
At3g05370	chr3:001536134	0.0	C/1536134-1538716	AT3G05370.1  CDS  gene_syn AtRLP31, F22F7.24, Receptor Like Protein 31  gene AtRLP31  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  go_function kinase activity|GO:0016301||ISS  product AtRLP31 (Receptor Like Protein 31); kinase/ protein binding  note Receptor Like Protein 31 (AtRLP31); FUNCTIONS IN: protein binding, kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP12 (Receptor Like Protein 12); protein binding (TAIR:AT1G71400.1); Has 71485 Blast hits to 19659 proteins in 809 species: Archae - 36; Bacteria - 3854; Metazoa - 21831; Fungi - 684; Plants - 39507; Viruses - 4; Other Eukaryotes - 5569 (source: NCBI BLink).  protein_id AT3G05370.1p  transcript_id AT3G05370.1  protein_id AT3G05370.1p  transcript_id AT3G05370.1  
At3g05380	chr3:001540562	0.0	W/1540562-1540660,1540747-1540845,1540925-1540990,1541121-1541198,1541466-1541640,1541861-1542120,1542226-1542574,1542793-1542861,1543032-1543297,1543380-1543436,1543652-1543978,1544055-1544233,1544311-1544587,1544677-1544865,1544975-1545127,1545284-1545361,1545439-1545711,1545975-1546139	AT3G05380.2  CDS  gene_syn F22F7.18, F22F7_18  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product DNA binding / nucleic acid binding / transcription factor  note DNA binding / nucleic acid binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding, nucleic acid binding; CONTAINS InterPro DOMAIN/s: Myb, DNA-binding (InterPro:IPR014778), Tudor (InterPro:IPR002999), DIRP (InterPro:IPR010561); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT5G27610.1); Has 3053 Blast hits to 2257 proteins in 222 species: Archae - 0; Bacteria - 292; Metazoa - 1632; Fungi - 288; Plants - 143; Viruses - 7; Other Eukaryotes - 691 (source: NCBI BLink).  protein_id AT3G05380.2p  transcript_id AT3G05380.2  protein_id AT3G05380.2p  transcript_id AT3G05380.2  
At3g05380	chr3:001540562	0.0	W/1540562-1540660,1540750-1540845,1540925-1540990,1541121-1541198,1541466-1541640,1541861-1542120,1542226-1542574,1542793-1542861,1543032-1543297,1543380-1543436,1543652-1543978,1544055-1544233,1544311-1544587,1544677-1544865,1544975-1545127,1545284-1545361,1545439-1545711,1545975-1546139	AT3G05380.1  CDS  gene_syn F22F7.18, F22F7_18  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product DNA binding / transcription factor  note DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), DIRP (InterPro:IPR010561); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT5G27610.1); Has 3027 Blast hits to 2244 proteins in 223 species: Archae - 0; Bacteria - 290; Metazoa - 1631; Fungi - 284; Plants - 138; Viruses - 7; Other Eukaryotes - 677 (source: NCBI BLink).  protein_id AT3G05380.1p  transcript_id AT3G05380.1  protein_id AT3G05380.1p  transcript_id AT3G05380.1  
At3g05380	chr3:001540961	0.0	W/1540961-1540990,1541121-1541198,1541466-1541640,1541861-1542120,1542226-1542574,1542793-1542861,1543032-1543297,1543380-1543436,1543652-1543978,1544055-1544233,1544311-1544587,1544677-1544865,1544975-1545127,1545284-1545361,1545439-1545711,1545975-1546139	AT3G05380.3  CDS  gene_syn F22F7.18, F22F7_18  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product DNA binding / nucleic acid binding / transcription factor  note DNA binding / nucleic acid binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding, nucleic acid binding; CONTAINS InterPro DOMAIN/s: Tudor (InterPro:IPR002999), DIRP (InterPro:IPR010561); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT5G27610.1); Has 2709 Blast hits to 2061 proteins in 218 species: Archae - 0; Bacteria - 241; Metazoa - 1430; Fungi - 267; Plants - 125; Viruses - 7; Other Eukaryotes - 639 (source: NCBI BLink).  protein_id AT3G05380.3p  transcript_id AT3G05380.3  protein_id AT3G05380.3p  transcript_id AT3G05380.3  
At3g05390	chr3:001546585	0.0	C/1546585-1547976	AT3G05390.1  CDS  gene_syn F22F7.17, F22F7_17  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01240.1); Has 255 Blast hits to 250 proteins in 21 species: Archae - 2; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 249; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G05390.1p  transcript_id AT3G05390.1  protein_id AT3G05390.1p  transcript_id AT3G05390.1  
At3g05400	chr3:001549702	0.0	W/1549702-1549830,1550413-1550475,1550736-1550825,1550944-1551003,1551141-1551206,1551283-1551348,1551440-1551515,1551615-1551679,1551780-1551872,1552034-1552114,1552231-1552315,1552404-1552447,1552590-1552652,1552761-1552874,1553153-1553212,1553321-1553435,1553824-1553942	AT3G05400.1  CDS  gene_syn F22F7.16, F22F7_16  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product sugar transporter, putative  note sugar transporter, putative; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: SFP1; carbohydrate transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT5G27350.1); Has 15989 Blast hits to 15662 proteins in 1061 species: Archae - 222; Bacteria - 5080; Metazoa - 4416; Fungi - 4071; Plants - 1288; Viruses - 0; Other Eukaryotes - 912 (source: NCBI BLink).  protein_id AT3G05400.1p  transcript_id AT3G05400.1  protein_id AT3G05400.1p  transcript_id AT3G05400.1  
At3g05410	chr3:001554783	0.0	W/1554783-1555101,1555185-1555395,1561144-1561456	AT3G05410.2  CDS  gene_syn F22F7.15, F22F7_15  go_component oxygen evolving complex|GO:0009654||IEA  go_component extrinsic to membrane|GO:0019898||IEA  go_process photosynthesis|GO:0015979||IEA  go_function calcium ion binding|GO:0005509||IEA  product calcium ion binding  note calcium ion binding; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: oxygen evolving complex, extrinsic to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); BEST Arabidopsis thaliana protein match is: PPL1 (PsbP-like protein 1); calcium ion binding (TAIR:AT3G55330.1).  protein_id AT3G05410.2p  transcript_id AT3G05410.2  protein_id AT3G05410.2p  transcript_id AT3G05410.2  
At3g05410	chr3:001554783	0.0	W/1554783-1555101,1555185-1555399	AT3G05410.1  CDS  gene_syn F22F7.15, F22F7_15  product unknown protein  note unknown protein; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 16 Blast hits to 16 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G05410.1p  transcript_id AT3G05410.1  protein_id AT3G05410.1p  transcript_id AT3G05410.1  
At3g05415	chr3:001555537	0.0	C/1555537-1560588	AT3G05415.1  mRNA_TE_gene  pseudo  gene_syn F22F7.19  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 9.0e-48 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)  
At3g05420	chr3:001561880	0.0	W/1561880-1562038,1562569-1562639,1563071-1563134,1563227-1563298,1563412-1563606,1563708-1563785,1563908-1564018,1564207-1564273,1564377-1564438,1564696-1564835,1565012-1565138,1565218-1565332,1565470-1565558,1565699-1565782,1565865-1566047,1566237-1566383,1566556-1566615,1566862-1567047	AT3G05420.2  CDS  gene_syn ACBP4, ACYL-COA BINDING PROTEIN 4, F22F7.13, F22F7_13  gene ACBP4  function Acyl-CoA binding protein with high affinity for oleoyl-CoA. Expressed in all plant organs. Involved in fatty acid transport.  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component cytosol|GO:0005829|18773301|IDA  go_process lipid transport|GO:0006869|15604682|IDA  go_function acyl-CoA binding|GO:0000062|15604682|IDA  go_function acyl-CoA binding|GO:0000062||ISS  product ACBP4 (ACYL-COA BINDING PROTEIN 4); acyl-CoA binding  note ACYL-COA BINDING PROTEIN 4 (ACBP4); FUNCTIONS IN: acyl-CoA binding; INVOLVED IN: lipid transport; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Acyl-CoA-binding protein, ACBP (InterPro:IPR000582), Kelch-type beta propeller (InterPro:IPR015915), FERM/acyl-CoA-binding protein, 3-helical bundle (InterPro:IPR014352); BEST Arabidopsis thaliana protein match is: ACBP5 (ACYL-COA BINDING PROTEIN 5); acyl-CoA binding (TAIR:AT5G27630.1); Has 9379 Blast hits to 5292 proteins in 346 species: Archae - 21; Bacteria - 453; Metazoa - 4845; Fungi - 874; Plants - 1221; Viruses - 3; Other Eukaryotes - 1962 (source: NCBI BLink).  protein_id AT3G05420.2p  transcript_id AT3G05420.2  protein_id AT3G05420.2p  transcript_id AT3G05420.2  
At3g05420	chr3:001561880	0.0	W/1561880-1562038,1562569-1562639,1563071-1563134,1563227-1563298,1563415-1563606,1563708-1563785,1563908-1564018,1564207-1564273,1564377-1564438,1564696-1564835,1565012-1565138,1565218-1565332,1565470-1565558,1565699-1565782,1565865-1566047,1566237-1566383,1566556-1566615,1566862-1567047	AT3G05420.1  CDS  gene_syn ACBP4, ACYL-COA BINDING PROTEIN 4, F22F7.13, F22F7_13  gene ACBP4  function Acyl-CoA binding protein with high affinity for oleoyl-CoA. Expressed in all plant organs. Involved in fatty acid transport.  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component cytosol|GO:0005829|18773301|IDA  go_process lipid transport|GO:0006869|15604682|IDA  go_function acyl-CoA binding|GO:0000062|15604682|IDA  go_function acyl-CoA binding|GO:0000062||ISS  product ACBP4 (ACYL-COA BINDING PROTEIN 4); acyl-CoA binding  note ACYL-COA BINDING PROTEIN 4 (ACBP4); FUNCTIONS IN: acyl-CoA binding; INVOLVED IN: lipid transport; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Acyl-CoA-binding protein, ACBP (InterPro:IPR000582), Kelch-type beta propeller (InterPro:IPR015915), FERM/acyl-CoA-binding protein, 3-helical bundle (InterPro:IPR014352); BEST Arabidopsis thaliana protein match is: ACBP5 (ACYL-COA BINDING PROTEIN 5); acyl-CoA binding (TAIR:AT5G27630.1); Has 9333 Blast hits to 5285 proteins in 346 species: Archae - 19; Bacteria - 449; Metazoa - 4819; Fungi - 865; Plants - 1228; Viruses - 3; Other Eukaryotes - 1950 (source: NCBI BLink).  protein_id AT3G05420.1p  transcript_id AT3G05420.1  protein_id AT3G05420.1p  transcript_id AT3G05420.1  
At3g05425	chr3:001567474	0.0	W/1567474-1567605	AT3G05425.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G05425.1p  transcript_id AT3G05425.1  protein_id AT3G05425.1p  transcript_id AT3G05425.1  
At3g05430	chr3:001567745	0.0	W/1567745-1568780,1569176-1571037	AT3G05430.1  CDS  gene_syn F22F7.12, F22F7_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product PWWP domain-containing protein  note PWWP domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: PWWP domain-containing protein (TAIR:AT5G27650.1); Has 506 Blast hits to 481 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 384; Fungi - 11; Plants - 92; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT3G05430.1p  transcript_id AT3G05430.1  protein_id AT3G05430.1p  transcript_id AT3G05430.1  
At3g05440	chr3:001572718	0.0	W/1572718-1573011,1573192-1573266	AT3G05440.1  CDS  gene_syn F22F7.11, F22F7_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: SRC2 (SOYBEAN GENE REGULATED BY COLD-2); protein binding (TAIR:AT1G09070.1); Has 24 Blast hits to 24 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G05440.1p  transcript_id AT3G05440.1  protein_id AT3G05440.1p  transcript_id AT3G05440.1  
At3g05450	chr3:001576192	0.0	C/1576192-1576418,1576080-1576172,1575859-1575955,1575528-1575708,1574803-1575194,1574605-1574688,1574256-1574448,1573909-1573964	AT3G05450.1  CDS  gene_syn F22F7.10, F22F7_10  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05685.1); Has 30905 Blast hits to 2528 proteins in 227 species: Archae - 0; Bacteria - 28079; Metazoa - 916; Fungi - 505; Plants - 127; Viruses - 92; Other Eukaryotes - 1186 (source: NCBI BLink).  protein_id AT3G05450.1p  transcript_id AT3G05450.1  protein_id AT3G05450.1p  transcript_id AT3G05450.1  
At3g05460	chr3:001577842	0.0	W/1577842-1577899,1578218-1578618	AT3G05460.1  CDS  gene_syn F22F7.9, F22F7_9  go_component endomembrane system|GO:0012505||IEA  product sporozoite surface protein-related  note sporozoite surface protein-related; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, sepal; EXPRESSED DURING: 4 anthesis, C globular stage; Has 163 Blast hits to 66 proteins in 24 species: Archae - 0; Bacteria - 34; Metazoa - 85; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT3G05460.1p  transcript_id AT3G05460.1  protein_id AT3G05460.1p  transcript_id AT3G05460.1  
At3g05470	chr3:001581055	0.0	C/1581055-1582547,1580789-1580979,1580486-1580721,1579667-1580401	AT3G05470.1  CDS  gene_syn F22F7.8, F22F7_8  go_component endomembrane system|GO:0012505||IEA  go_process cellular component organization|GO:0016043||IEA  go_process actin cytoskeleton organization|GO:0030036||IEA  go_function actin binding|GO:0003779|12417149|ISS  go_function actin binding|GO:0003779|15256004|ISS  go_function actin binding|GO:0003779||ISS  product formin homology 2 domain-containing protein / FH2 domain-containing protein  note formin homology 2 domain-containing protein / FH2 domain-containing protein; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding FH2 and DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: Fh5 (FORMIN HOMOLOGY5); actin binding (TAIR:AT5G54650.2); Has 4903 Blast hits to 4192 proteins in 284 species: Archae - 2; Bacteria - 148; Metazoa - 2368; Fungi - 581; Plants - 909; Viruses - 229; Other Eukaryotes - 666 (source: NCBI BLink).  protein_id AT3G05470.1p  transcript_id AT3G05470.1  protein_id AT3G05470.1p  transcript_id AT3G05470.1  
At3g05480	chr3:001585383	0.0	W/1585383-1585487,1585852-1585971,1586054-1586162,1586404-1586655,1586739-1586810,1587216-1587512,1587597-1587741,1587987-1588027,1588117-1588238	AT3G05480.2  CDS  gene_syn ATRAD9, F22F7.7, F22F7_7, RAD9  gene RAD9  function Involved in the regulation of DNA damage repair and homologous recombination.  go_process DNA repair|GO:0006281||ISS  go_process regulation of DNA repair|GO:0006282|15165187|IMP  product RAD9  note RAD9; INVOLVED IN: DNA repair, regulation of DNA repair; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Rad9 (InterPro:IPR007268), Cell cycle checkpoint, RAD9 (InterPro:IPR016552); Has 173 Blast hits to 173 proteins in 64 species: Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 27; Plants - 24; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G05480.2p  transcript_id AT3G05480.2  protein_id AT3G05480.2p  transcript_id AT3G05480.2  
At3g05480	chr3:001585383	0.0	W/1585383-1585487,1585852-1585971,1586054-1586162,1586404-1586655,1586739-1586851,1586934-1586998,1587265-1587512,1587597-1587741,1587987-1588027,1588117-1588238	AT3G05480.1  CDS  gene_syn ATRAD9, F22F7.7, F22F7_7, RAD9  gene RAD9  function Involved in the regulation of DNA damage repair and homologous recombination.  go_process DNA repair|GO:0006281||ISS  go_process regulation of DNA repair|GO:0006282|15165187|IMP  product RAD9  note RAD9; INVOLVED IN: DNA repair, regulation of DNA repair; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Rad9 (InterPro:IPR007268), Cell cycle checkpoint, RAD9 (InterPro:IPR016552); Has 225 Blast hits to 225 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 154; Fungi - 37; Plants - 24; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT3G05480.1p  transcript_id AT3G05480.1  protein_id AT3G05480.1p  transcript_id AT3G05480.1  
At3g05490	chr3:001591381	0.0	W/1591381-1591740	AT3G05490.1  CDS  gene_syn F22F7.6, F22F7_6, RALFL22, ralf-like 22  gene RALFL22  function Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  go_component apoplast|GO:0048046|12611624|ISS  go_process cell-cell signaling|GO:0007267|12611624|ISS  go_function signal transducer activity|GO:0004871|12611624|TAS  product RALFL22 (ralf-like 22); signal transducer  note ralf-like 22 (RALFL22); FUNCTIONS IN: signal transducer activity; INVOLVED IN: cell-cell signaling; LOCATED IN: apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALFL33 (ralf-like 33); signal transducer (TAIR:AT4G15800.1); Has 155 Blast hits to 155 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 153; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G05490.1p  transcript_id AT3G05490.1  protein_id AT3G05490.1p  transcript_id AT3G05490.1  
At3g05500	chr3:001593540	0.0	W/1593540-1593581,1593855-1594079,1594329-1594802	AT3G05500.1  CDS  gene_syn F22F7.5, F22F7_5  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  product rubber elongation factor (REF) family protein  note rubber elongation factor (REF) family protein; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rubber elongation factor (InterPro:IPR008802); BEST Arabidopsis thaliana protein match is: rubber elongation factor (REF) protein-related (TAIR:AT2G47780.1); Has 77 Blast hits to 77 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G05500.1p  transcript_id AT3G05500.1  protein_id AT3G05500.1p  transcript_id AT3G05500.1  
At3g05510	chr3:001595576	0.0	W/1595576-1595801,1596089-1596207,1596294-1596359,1596460-1596657,1596759-1596877,1596976-1597081,1597562-1598074	AT3G05510.1  CDS  gene_syn F22F7.4, F22F7_4  go_process metabolic process|GO:0008152||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_process metabolic process|GO:0008152||ISS  go_function acyltransferase activity|GO:0008415||ISS  product phospholipid/glycerol acyltransferase family protein  note phospholipid/glycerol acyltransferase family protein; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123), Tafazzin (InterPro:IPR000872); BEST Arabidopsis thaliana protein match is: phospholipid/glycerol acyltransferase family protein (TAIR:AT1G78690.1); Has 1693 Blast hits to 1691 proteins in 471 species: Archae - 0; Bacteria - 947; Metazoa - 220; Fungi - 76; Plants - 60; Viruses - 0; Other Eukaryotes - 390 (source: NCBI BLink).  protein_id AT3G05510.1p  transcript_id AT3G05510.1  protein_id AT3G05510.1p  transcript_id AT3G05510.1  
At3g05510	chr3:001596133	0.0	W/1596133-1596207,1596294-1596359,1596460-1596657,1596759-1596877,1596976-1597081,1597562-1598074	AT3G05510.2  CDS  gene_syn F22F7.4, F22F7_4  go_process metabolic process|GO:0008152||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_process metabolic process|GO:0008152||ISS  go_function acyltransferase activity|GO:0008415||ISS  product phospholipid/glycerol acyltransferase family protein  note phospholipid/glycerol acyltransferase family protein; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123), Tafazzin (InterPro:IPR000872); BEST Arabidopsis thaliana protein match is: phospholipid/glycerol acyltransferase family protein (TAIR:AT1G78690.1); Has 1651 Blast hits to 1649 proteins in 451 species: Archae - 0; Bacteria - 906; Metazoa - 220; Fungi - 76; Plants - 60; Viruses - 0; Other Eukaryotes - 389 (source: NCBI BLink).  protein_id AT3G05510.2p  transcript_id AT3G05510.2  protein_id AT3G05510.2p  transcript_id AT3G05510.2  
At3g05520	chr3:001598611	0.0	W/1598611-1598728,1598896-1599011,1599614-1599703,1599792-1599856,1600086-1600247,1600340-1600418,1600520-1600597,1600738-1600812,1600894-1600929,1601027-1601130,1601212-1601437	AT3G05520.2  CDS  gene_syn F22F7.25  go_process actin cytoskeleton organization|GO:0030036||IEA  go_function actin binding|GO:0003779||IEA  go_component F-actin capping protein complex|GO:0008290||ISS  go_process actin cytoskeleton organization|GO:0030036||ISS  go_function actin binding|GO:0003779||ISS  product F-actin capping protein alpha subunit family protein  note F-actin capping protein alpha subunit family protein; FUNCTIONS IN: actin binding; INVOLVED IN: actin cytoskeleton organization; LOCATED IN: F-actin capping protein complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: F-actin capping protein, alpha subunit, actin binding (InterPro:IPR018315), F-actin capping protein, alpha subunit (InterPro:IPR002189), F-actin capping protein, alpha subunit, conserved site (InterPro:IPR017865).  protein_id AT3G05520.2p  transcript_id AT3G05520.2  protein_id AT3G05520.2p  transcript_id AT3G05520.2  
At3g05520	chr3:001598611	0.0	W/1598611-1598728,1598896-1599011,1599614-1599703,1599792-1599856,1600086-1600247,1600340-1600418,1600520-1600597,1600738-1600812,1600894-1600929,1601027-1601134	AT3G05520.1  CDS  gene_syn F22F7.25  go_component nucleus|GO:0005634|14617066|IDA  go_process actin cytoskeleton organization|GO:0030036||IEA  go_function actin binding|GO:0003779||IEA  go_component F-actin capping protein complex|GO:0008290||ISS  go_process actin cytoskeleton organization|GO:0030036||ISS  go_function actin binding|GO:0003779||ISS  product F-actin capping protein alpha subunit family protein  note F-actin capping protein alpha subunit family protein; FUNCTIONS IN: actin binding; INVOLVED IN: actin cytoskeleton organization; LOCATED IN: nucleus, F-actin capping protein complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: F-actin capping protein, alpha subunit, actin binding (InterPro:IPR018315), F-actin capping protein, alpha subunit (InterPro:IPR002189), F-actin capping protein, alpha subunit, conserved site (InterPro:IPR017865); Has 514 Blast hits to 508 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 332; Fungi - 104; Plants - 17; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT3G05520.1p  transcript_id AT3G05520.1  protein_id AT3G05520.1p  transcript_id AT3G05520.1  
At3g05525	chr3:001601338	0.0	C/1601338-1601409	AT3G05525.1  tRNA  gene_syn 60210.TRNA-GLU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Glu (anticodon: TTC)  transcript_id AT3G05525.1  
At3g05530	chr3:001603540	0.0	W/1603540-1603659,1604010-1604126,1604228-1604335,1604441-1604632,1604712-1604903,1605082-1605200,1605288-1605375,1605470-1605589,1605676-1605816,1605916-1605993	AT3G05530.1  CDS  gene_syn 19S PROTEASOME REGULATORY COMPLEX SUBUNIT S6A, 26S PROTEASOME AAA-ATPASE SUBUNIT, ATS6A.2, F22F7.1, F22F7_1, REGULATORY PARTICLE TRIPLE-A ATPASE 5A, RPT5A  gene RPT5A  function Encodes RPT5a (Regulatory Particle 5a), one of the six AAA-ATPases of the proteasome regulatory particle. Essential for gametophyte development. In Arabidopsis, the RPT5 subunit is encoded by two highly homologous genes, RPT5a and RPT5b. RPT5a and RPT5b show accession-dependent functional redundancy. In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50% pollen lethality, indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession, a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte, whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype.  go_component nucleus|GO:0005634|11742986|TAS  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component proteasome regulatory particle, base subcomplex|GO:0008540|9741626|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_process embryo sac development|GO:0009553|19223514|IGI  go_process pollen development|GO:0009555|19223514|IGI  go_process proteasomal protein catabolic process|GO:0010498|19223514|IGI  go_function calmodulin binding|GO:0005516|11782485|TAS  go_function ATPase activity|GO:0016887|10417703|IGI  go_function ATPase activity|GO:0016887||ISS  product RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A); ATPase/ calmodulin binding  note REGULATORY PARTICLE TRIPLE-A ATPASE 5A (RPT5A); FUNCTIONS IN: calmodulin binding, ATPase activity; INVOLVED IN: proteasomal protein catabolic process, embryo sac development, pollen development, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: RPT5B (26S proteasome AAA-ATPase subunit RPT5B); ATPase/ calmodulin binding (TAIR:AT1G09100.1); Has 23046 Blast hits to 21483 proteins in 1797 species: Archae - 827; Bacteria - 6772; Metazoa - 4157; Fungi - 2391; Plants - 1759; Viruses - 41; Other Eukaryotes - 7099 (source: NCBI BLink).  protein_id AT3G05530.1p  transcript_id AT3G05530.1  protein_id AT3G05530.1p  transcript_id AT3G05530.1  
At3g05540	chr3:001608003	0.0	C/1608003-1608030,1607688-1607761,1607545-1607587,1606966-1607048,1606698-1606855,1606487-1606607	AT3G05540.1  CDS  gene_syn F18C1.20, F18C1_20  go_component cytoplasm|GO:0005737||IEA  go_component cytoplasm|GO:0005737||ISS  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Translationally controlled tumour protein (InterPro:IPR018105), Translationally controlled tumour-associated TCTP (InterPro:IPR001983), Mss4/translationally controlled tumour-associated TCTP (InterPro:IPR011323), Translationally controlled tumour protein, conserved site (InterPro:IPR018103), Mss4-like (InterPro:IPR011057); BEST Arabidopsis thaliana protein match is: TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) (TAIR:AT3G16640.1); Has 640 Blast hits to 640 proteins in 231 species: Archae - 0; Bacteria - 0; Metazoa - 343; Fungi - 110; Plants - 105; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT3G05540.1p  transcript_id AT3G05540.1  protein_id AT3G05540.1p  transcript_id AT3G05540.1  
At3g05545	chr3:001609436	0.0	W/1609436-1609625,1610207-1610379,1610553-1610608,1610717-1610742,1610850-1611264,1611716-1612133	AT3G05545.1  CDS  go_function DNA binding|GO:0003677||ISS  go_function ubiquitin-protein ligase activity|GO:0004842|15644464|IDA  product transcription factor, putative / zinc finger (C3HC4 type RING finger) family protein  note transcription factor, putative / zinc finger (C3HC4 type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, DNA binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G47700.1); Has 1397 Blast hits to 1103 proteins in 151 species: Archae - 0; Bacteria - 78; Metazoa - 607; Fungi - 252; Plants - 198; Viruses - 4; Other Eukaryotes - 258 (source: NCBI BLink).  protein_id AT3G05545.1p  transcript_id AT3G05545.1  protein_id AT3G05545.1p  transcript_id AT3G05545.1  
At3g05550	chr3:001612860	0.0	W/1612860-1612929,1613237-1613327,1613616-1613748	AT3G05550.1  CDS  gene_syn F18C1.18, F18C1_18  go_component cellular_component|GO:0005575||ND  go_process response to hypoxia|GO:0001666||ISS  go_function molecular_function|GO:0003674||ND  product hypoxia-responsive family protein  note hypoxia-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to hypoxia; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: hypoxia-responsive family protein (TAIR:AT5G27760.1); Has 87 Blast hits to 87 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 34; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G05550.1p  transcript_id AT3G05550.1  protein_id AT3G05550.1p  transcript_id AT3G05550.1  
At3g05560	chr3:001614641	0.0	W/1614641-1614870,1615060-1615204	AT3G05560.1  CDS  gene_syn F18C1.17, F18C1_17  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  product 60S ribosomal protein L22-2 (RPL22B)  note 60S ribosomal protein L22-2 (RPL22B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, nucleolus, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L22e (InterPro:IPR002671); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L22 (RPL22C) (TAIR:AT5G27770.1); Has 492 Blast hits to 492 proteins in 173 species: Archae - 0; Bacteria - 0; Metazoa - 251; Fungi - 89; Plants - 73; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT3G05560.1p  transcript_id AT3G05560.1  protein_id AT3G05560.1p  transcript_id AT3G05560.1  
At3g05560	chr3:001614641	0.0	W/1614641-1614870,1615060-1615204	AT3G05560.2  CDS  gene_syn F18C1.17, F18C1_17  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  product 60S ribosomal protein L22-2 (RPL22B)  note 60S ribosomal protein L22-2 (RPL22B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, nucleolus, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L22e (InterPro:IPR002671); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L22 (RPL22C) (TAIR:AT5G27770.1); Has 492 Blast hits to 492 proteins in 173 species: Archae - 0; Bacteria - 0; Metazoa - 251; Fungi - 89; Plants - 73; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT3G05560.2p  transcript_id AT3G05560.2  protein_id AT3G05560.2p  transcript_id AT3G05560.2  
At3g05560	chr3:001614641	0.0	W/1614641-1614870,1615060-1615204	AT3G05560.3  CDS  gene_syn F18C1.17, F18C1_17  go_component plasma membrane|GO:0005886|17317660|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  product 60S ribosomal protein L22-2 (RPL22B)  note 60S ribosomal protein L22-2 (RPL22B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L22e (InterPro:IPR002671); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L22 (RPL22C) (TAIR:AT5G27770.1); Has 492 Blast hits to 492 proteins in 173 species: Archae - 0; Bacteria - 0; Metazoa - 251; Fungi - 89; Plants - 73; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT3G05560.3p  transcript_id AT3G05560.3  protein_id AT3G05560.3p  transcript_id AT3G05560.3  
At3g05570	chr3:001616463	0.0	C/1616463-1616636,1616265-1616363	AT3G05570.1  CDS  gene_syn F18C1.16, F18C1_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G39235.1); Has 39 Blast hits to 39 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G05570.1p  transcript_id AT3G05570.1  protein_id AT3G05570.1p  transcript_id AT3G05570.1  
At3g05580	chr3:001619658	0.0	C/1619658-1619850,1618775-1619334,1618441-1618620,1618216-1618239	AT3G05580.1  CDS  gene_syn F18C1.15, F18C1_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722|9617814|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product serine/threonine protein phosphatase, putative  note serine/threonine protein phosphatase, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: TOPP8; protein serine/threonine phosphatase (TAIR:AT5G27840.1); Has 5462 Blast hits to 5334 proteins in 432 species: Archae - 49; Bacteria - 286; Metazoa - 2056; Fungi - 932; Plants - 609; Viruses - 9; Other Eukaryotes - 1521 (source: NCBI BLink).  protein_id AT3G05580.1p  transcript_id AT3G05580.1  protein_id AT3G05580.1p  transcript_id AT3G05580.1  
At3g05590	chr3:001621511	0.0	W/1621511-1621513,1621792-1621881,1621994-1622122,1622344-1622526,1622617-1622775	AT3G05590.1  CDS  gene_syn CYTOPLASMIC RIBOSOMAL PROTEIN L18, F18C1.14, F18C1_14, RIBOSOMAL PROTEIN L18, RPL18  gene RPL18  function Encodes cytoplasmic ribosomal protein L18.  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component large ribosomal subunit|GO:0015934|15955926|IDA  go_component large ribosomal subunit|GO:0015934||ISS  go_component large ribosomal subunit|GO:0015934||TAS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process translation|GO:0006412||TAS  go_function structural constituent of ribosome|GO:0003735||ISS  go_function structural constituent of ribosome|GO:0003735||TAS  product RPL18 (RIBOSOMAL PROTEIN L18); structural constituent of ribosome  note RIBOSOMAL PROTEIN L18 (RPL18); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, plasma membrane, chloroplast, vacuole, large ribosomal subunit; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18e (InterPro:IPR000039); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L18 (RPL18C) (TAIR:AT5G27850.1); Has 591 Blast hits to 591 proteins in 232 species: Archae - 18; Bacteria - 0; Metazoa - 279; Fungi - 98; Plants - 80; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT3G05590.1p  transcript_id AT3G05590.1  protein_id AT3G05590.1p  transcript_id AT3G05590.1  
At3g05600	chr3:001624228	0.0	C/1624228-1624704,1623820-1624070,1623485-1623752	AT3G05600.1  CDS  gene_syn F18C1.13, F18C1_13  go_function catalytic activity|GO:0003824||IEA  go_function epoxide hydrolase activity|GO:0004301||ISS  product epoxide hydrolase, putative  note epoxide hydrolase, putative; FUNCTIONS IN: epoxide hydrolase activity, catalytic activity; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: epoxide hydrolase, putative (TAIR:AT4G02340.1); Has 10054 Blast hits to 10027 proteins in 1009 species: Archae - 39; Bacteria - 6258; Metazoa - 522; Fungi - 295; Plants - 322; Viruses - 0; Other Eukaryotes - 2618 (source: NCBI BLink).  protein_id AT3G05600.1p  transcript_id AT3G05600.1  protein_id AT3G05600.1p  transcript_id AT3G05600.1  
At3g05602	chr3:001624978	0.0	C/1624978-1625100	AT3G05602.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G05602.1p  transcript_id AT3G05602.1  protein_id AT3G05602.1p  transcript_id AT3G05602.1  
At3g05610	chr3:001626968	0.0	C/1626968-1627976,1625876-1626876	AT3G05610.1  CDS  gene_syn F18C1.12, F18C1_12  go_component cell wall|GO:0005618||IEA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase inhibitor (InterPro:IPR006501), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT5G27870.1); Has 11174 Blast hits to 2193 proteins in 342 species: Archae - 4; Bacteria - 1270; Metazoa - 626; Fungi - 675; Plants - 1023; Viruses - 67; Other Eukaryotes - 7509 (source: NCBI BLink).  protein_id AT3G05610.1p  transcript_id AT3G05610.1  protein_id AT3G05610.1p  transcript_id AT3G05610.1  
At3g05620	chr3:001630803	0.0	C/1630803-1631766,1629658-1630325	AT3G05620.1  CDS  gene_syn F18C1.11, F18C1_11  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: shoot, leaf apex, hypocotyl, flower, pollen tube; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT3G43270.1); Has 1393 Blast hits to 1354 proteins in 188 species: Archae - 0; Bacteria - 253; Metazoa - 1; Fungi - 133; Plants - 1006; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G05620.1p  transcript_id AT3G05620.1  protein_id AT3G05620.1p  transcript_id AT3G05620.1  
At3g05625	chr3:001632408	0.0	W/1632408-1632653,1632762-1632828,1632933-1632972,1633113-1633245,1633330-1633401,1633484-1633564,1633689-1633750,1633840-1633912	AT3G05625.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); Has 209 Blast hits to 207 proteins in 91 species: Archae - 14; Bacteria - 152; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT3G05625.1p  transcript_id AT3G05625.1  protein_id AT3G05625.1p  transcript_id AT3G05625.1  
At3g05630	chr3:001635321	0.0	W/1635321-1635545,1635819-1635920,1636006-1636127,1636225-1636366,1636453-1636623,1636714-1637115,1637197-1637313,1637402-1637541,1637620-1637769,1637844-1638000,1638076-1638546,1638638-1638784,1638862-1639161,1639239-1639370,1639613-1639740,1639871-1640105	AT3G05630.1  CDS  gene_syn F18C1.10, F18C1_10, PDLZ2, PHOSPHOLIPASE D, PHOSPHOLIPASE D ZETA 2, PLDP2, PLDZETA2  gene PLDP2  function Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins. Regulates vesicle trafficking. Required for auxin transport and distribution and hence auxin responses. This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains. Involved regulating root development in response to nutrient limitation. Plays a major role in phosphatidic acid production during phosphate deprivation. Induced upon Pi starvation in both shoots and roots. Involved in hydrolyzing phosphatidylcholine and phosphatidylethanolamine to produce diacylglycerol for digalactosyldiacylglycerol synthesis and free Pi to sustain other Pi-requiring processes. Does not appear to be involved in root hair patterning.  go_component vacuole|GO:0005773|14760709|IDA  go_process cellular response to nitrogen starvation|GO:0006995|16617110|IEP  go_process phospholipid catabolic process|GO:0009395|16384909|IMP  go_process response to auxin stimulus|GO:0009733|17259265|IMP  go_process cellular response to phosphate starvation|GO:0016036|16617110|IEP  go_process vesicle-mediated transport|GO:0016192|17259265|IDA  go_process galactolipid biosynthetic process|GO:0019375|16617110|IMP  go_process root development|GO:0048364|16384909|IGI  go_function phospholipase D activity|GO:0004630||ISS  product PLDP2; phospholipase D  note PLDP2; FUNCTIONS IN: phospholipase D activity; INVOLVED IN: in 7 processes; LOCATED IN: vacuole; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Phospholipase D, eukaryota (InterPro:IPR016555), Phospholipase D (InterPro:IPR015679), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: PLDP1 (PHOSPHOLIPASE D P1); phospholipase D (TAIR:AT3G16785.1); Has 1911 Blast hits to 1044 proteins in 308 species: Archae - 2; Bacteria - 488; Metazoa - 446; Fungi - 410; Plants - 469; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT3G05630.1p  transcript_id AT3G05630.1  protein_id AT3G05630.1p  transcript_id AT3G05630.1  
At3g05640	chr3:001641979	0.0	C/1641979-1642227,1641412-1641705,1641201-1641318,1640878-1641101,1640610-1640801	AT3G05640.1  CDS  gene_syn F18C1.9, F18C1_9  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process response to water deprivation|GO:0009414|18552355|IEP  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: response to water deprivation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT5G27930.2); Has 3800 Blast hits to 3798 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 1174; Fungi - 440; Plants - 1263; Viruses - 5; Other Eukaryotes - 918 (source: NCBI BLink).  protein_id AT3G05640.1p  transcript_id AT3G05640.1  protein_id AT3G05640.1p  transcript_id AT3G05640.1  
At3g05640	chr3:001641979	0.0	C/1641979-1642227,1641412-1641705,1641201-1641318,1640878-1641101,1640610-1640801	AT3G05640.2  CDS  gene_syn F18C1.9, F18C1_9  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process response to water deprivation|GO:0009414|18552355|IEP  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: response to water deprivation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT5G27930.2); Has 3800 Blast hits to 3798 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 1174; Fungi - 440; Plants - 1263; Viruses - 5; Other Eukaryotes - 918 (source: NCBI BLink).  protein_id AT3G05640.2p  transcript_id AT3G05640.2  protein_id AT3G05640.2p  transcript_id AT3G05640.2  
At3g05650	chr3:001645884	0.0	C/1645884-1648490	AT3G05650.1  CDS  gene_syn AtRLP32, F18C1.8, F18C1_8, Receptor Like Protein 32  gene AtRLP32  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  go_function kinase activity|GO:0016301||ISS  product AtRLP32 (Receptor Like Protein 32); kinase/ protein binding  note Receptor Like Protein 32 (AtRLP32); FUNCTIONS IN: protein binding, kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP35 (Receptor Like Protein 35); kinase/ protein binding (TAIR:AT3G11080.1); Has 71607 Blast hits to 19880 proteins in 794 species: Archae - 49; Bacteria - 5024; Metazoa - 23170; Fungi - 797; Plants - 36850; Viruses - 12; Other Eukaryotes - 5705 (source: NCBI BLink).  protein_id AT3G05650.1p  transcript_id AT3G05650.1  protein_id AT3G05650.1p  transcript_id AT3G05650.1  
At3g05660	chr3:001649383	0.0	C/1649383-1652001,1649258-1649266	AT3G05660.1  CDS  gene_syn AtRLP33, F18C1.7, F18C1_7, Receptor Like Protein 33  gene AtRLP33  go_component chloroplast|GO:0009507|15028209|IDA  go_process defense response|GO:0006952||ISS  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  go_function kinase activity|GO:0016301||ISS  product AtRLP33 (Receptor Like Protein 33); kinase/ protein binding  note Receptor Like Protein 33 (AtRLP33); FUNCTIONS IN: protein binding, kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210); BEST Arabidopsis thaliana protein match is: AtRLP35 (Receptor Like Protein 35); kinase/ protein binding (TAIR:AT3G11080.1); Has 78521 Blast hits to 22105 proteins in 842 species: Archae - 51; Bacteria - 5201; Metazoa - 25025; Fungi - 1017; Plants - 41085; Viruses - 13; Other Eukaryotes - 6129 (source: NCBI BLink).  protein_id AT3G05660.1p  transcript_id AT3G05660.1  protein_id AT3G05660.1p  transcript_id AT3G05660.1  
At3g05670	chr3:001653888	0.0	W/1653888-1655342,1655684-1656605,1656748-1657022	AT3G05670.1  CDS  gene_syn F18C1.6, F18C1_6  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product PHD finger family protein  note PHD finger family protein; FUNCTIONS IN: protein binding, DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT4G10940.1); Has 29819 Blast hits to 18510 proteins in 786 species: Archae - 53; Bacteria - 3683; Metazoa - 11346; Fungi - 4273; Plants - 1754; Viruses - 538; Other Eukaryotes - 8172 (source: NCBI BLink).  protein_id AT3G05670.1p  transcript_id AT3G05670.1  protein_id AT3G05670.1p  transcript_id AT3G05670.1  
At3g05675	chr3:001659848	0.0	C/1659848-1659859,1658425-1659738	AT3G05675.1  CDS  go_function protein binding|GO:0005515||IEA  product protein binding  note protein binding; FUNCTIONS IN: protein binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10800.1); Has 155 Blast hits to 155 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 155; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G05675.1p  transcript_id AT3G05675.1  protein_id AT3G05675.1p  transcript_id AT3G05675.1  
At3g05675	chr3:001659848	0.0	C/1659848-1659859,1658425-1659738	AT3G05675.2  CDS  go_function protein binding|GO:0005515||IEA  product protein binding  note protein binding; FUNCTIONS IN: protein binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10800.1); Has 155 Blast hits to 155 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 155; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G05675.2p  transcript_id AT3G05675.2  protein_id AT3G05675.2p  transcript_id AT3G05675.2  
At3g05680	chr3:001671941	0.0	C/1671941-1672015,1671588-1671676,1670879-1671002,1669715-1670356,1669258-1669626,1669064-1669168,1668780-1668962,1668463-1668604,1668194-1668375,1668022-1668107,1667873-1667921,1667332-1667398,1666752-1667233,1666550-1666649,1666164-1666297,1665893-1665960,1665581-1665797,1665125-1665340,1664867-1665022,1664740-1664793,1664446-1664654,1664288-1664351,1663744-1664063,1663208-1663391,1661103-1663109,1660930-1661001,1660802-1660822	AT3G05680.1  CDS  gene_syn EMB2016, F18C1.5, F18C1_5, embryo defective 2016  gene EMB2016  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product EMB2016 (embryo defective 2016)  note embryo defective 2016 (EMB2016); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; Has 7710 Blast hits to 5348 proteins in 349 species: Archae - 0; Bacteria - 146; Metazoa - 3422; Fungi - 1120; Plants - 652; Viruses - 71; Other Eukaryotes - 2299 (source: NCBI BLink).  protein_id AT3G05680.1p  transcript_id AT3G05680.1  protein_id AT3G05680.1p  transcript_id AT3G05680.1  
At3g05685	chr3:001674855	0.0	C/1674855-1674908,1674323-1674499,1674143-1674244,1673780-1673989	AT3G05685.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17090.1); Has 28 Blast hits to 26 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G05685.1p  transcript_id AT3G05685.1  protein_id AT3G05685.1p  transcript_id AT3G05685.1  
At3g05690	chr3:001678120	0.0	C/1678120-1678324,1677709-1677803,1677379-1677597,1676922-1677290	AT3G05690.1  CDS  gene_syn ATHAP2B, F18C1.4, F18C1_4, HAP2B, HEME ACTIVATOR PROTEIN (YEAST) HOMOLOG 2B, NF-YA2, NUCLEAR FACTOR Y, SUBUNIT A2, UNE8, UNFERTILIZED EMBRYO SAC 8  gene NF-YA2  function Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.  go_component CCAAT-binding factor complex|GO:0016602|9662544|ISS  go_component CCAAT-binding factor complex|GO:0016602||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355|9662544|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process double fertilization forming a zygote and endosperm|GO:0009567|15634699|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9662544|IGI  go_function transcription factor activity|GO:0003700||ISS  product NF-YA2 (NUCLEAR FACTOR Y, SUBUNIT A2); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT A2 (NF-YA2); FUNCTIONS IN: transcription factor activity; INVOLVED IN: double fertilization forming a zygote and endosperm, regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289); BEST Arabidopsis thaliana protein match is: NF-YA10 (NUCLEAR FACTOR Y, SUBUNIT A10); transcription factor (TAIR:AT5G06510.2); Has 438 Blast hits to 438 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 90; Plants - 215; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT3G05690.1p  transcript_id AT3G05690.1  protein_id AT3G05690.1p  transcript_id AT3G05690.1  
At3g05700	chr3:001684248	0.0	C/1684248-1684323,1683537-1683679,1683172-1683249,1682805-1683070,1682432-1682540	AT3G05700.1  CDS  gene_syn F18C1.3, F18C1_3  go_process response to water deprivation|GO:0009414||ISS  product unknown protein  note INVOLVED IN: response to water deprivation; CONTAINS InterPro DOMAIN/s: Drought induced 19 (InterPro:IPR008598); BEST Arabidopsis thaliana protein match is: drought-responsive family protein (TAIR:AT5G26990.1); Has 167 Blast hits to 167 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 38; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G05700.1p  transcript_id AT3G05700.1  protein_id AT3G05700.1p  transcript_id AT3G05700.1  
At3g05710	chr3:001685262	0.0	W/1685262-1685485,1685800-1686076,1686170-1686259,1686481-1686552,1686632-1686709,1686804-1686869,1686952-1687032,1687122-1687229	AT3G05710.2  CDS  gene_syn ATSYP43, F18C1.2, F18C1_2, SYNTAXIN OF PLANTS 43, SYP43  gene SYP43  function member of SYP4 Gene Family  go_component membrane|GO:0016020||IEA  go_process intracellular protein transport|GO:0006886|11115874|TAS  go_process membrane fusion|GO:0006944|11115874|TAS  go_function SNAP receptor activity|GO:0005484|11115874|TAS  product SYP43 (SYNTAXIN OF PLANTS 43); SNAP receptor  note SYNTAXIN OF PLANTS 43 (SYP43); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion, intracellular protein transport; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: SYP41 (SYNTAXIN OF PLANTS 41); SNAP receptor (TAIR:AT5G26980.2); Has 1535 Blast hits to 1535 proteins in 192 species: Archae - 2; Bacteria - 10; Metazoa - 722; Fungi - 314; Plants - 206; Viruses - 0; Other Eukaryotes - 281 (source: NCBI BLink).  protein_id AT3G05710.2p  transcript_id AT3G05710.2  protein_id AT3G05710.2p  transcript_id AT3G05710.2  
At3g05710	chr3:001685262	0.0	W/1685262-1685485,1685803-1686076,1686170-1686259,1686481-1686552,1686632-1686709,1686804-1686869,1686952-1687032,1687122-1687229	AT3G05710.1  CDS  gene_syn ATSYP43, F18C1.2, F18C1_2, SYNTAXIN OF PLANTS 43, SYP43  gene SYP43  function member of SYP4 Gene Family  go_component membrane|GO:0016020||IEA  go_process intracellular protein transport|GO:0006886|11115874|TAS  go_process membrane fusion|GO:0006944|11115874|TAS  go_function SNAP receptor activity|GO:0005484|11115874|TAS  product SYP43 (SYNTAXIN OF PLANTS 43); SNAP receptor  note SYNTAXIN OF PLANTS 43 (SYP43); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion, intracellular protein transport; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: SYP41 (SYNTAXIN OF PLANTS 41); SNAP receptor (TAIR:AT5G26980.2); Has 1535 Blast hits to 1535 proteins in 192 species: Archae - 2; Bacteria - 10; Metazoa - 723; Fungi - 314; Plants - 206; Viruses - 0; Other Eukaryotes - 280 (source: NCBI BLink).  protein_id AT3G05710.1p  transcript_id AT3G05710.1  protein_id AT3G05710.1p  transcript_id AT3G05710.1  
At3g05720	chr3:001691548	0.0	C/1691548-1691736,1690886-1690964,1690590-1690684,1690361-1690492,1689898-1690083,1689290-1689453,1689136-1689214,1688821-1688949,1688593-1688720,1687992-1688397	AT3G05720.1  CDS  gene_syn F18C1.1, F18C1_1, IMPA-7, IMPORTIN ALPHA ISOFORM 7  gene IMPA-7  function Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.  go_component nucleus|GO:0005634||IEA  go_component nuclear pore|GO:0005643||IEA  go_component cytoplasm|GO:0005737||IEA  go_process protein import into nucleus|GO:0006606||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function binding|GO:0005488||IEA  go_function protein transporter activity|GO:0008565||IEA  go_process intracellular protein transport|GO:0006886||ISS  go_function protein transporter activity|GO:0008565||ISS  product IMPA-7 (IMPORTIN ALPHA ISOFORM 7); binding / protein transporter  note IMPORTIN ALPHA ISOFORM 7 (IMPA-7); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Importin-alpha-like, importin-beta-binding region (InterPro:IPR002652), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: IMPA-1 (IMPORTIN ALPHA ISOFORM 1); binding / protein transporter (TAIR:AT3G06720.2); Has 2232 Blast hits to 1764 proteins in 201 species: Archae - 0; Bacteria - 4; Metazoa - 1164; Fungi - 286; Plants - 372; Viruses - 0; Other Eukaryotes - 406 (source: NCBI BLink).  protein_id AT3G05720.1p  transcript_id AT3G05720.1  protein_id AT3G05720.1p  transcript_id AT3G05720.1  
At3g05725	chr3:001692548	0.0	W/1692548-1692776,1693008-1693153	AT3G05725.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G47480.1); Has 124 Blast hits to 124 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G05725.1p  transcript_id AT3G05725.1  protein_id AT3G05725.1p  transcript_id AT3G05725.1  
At3g05727	chr3:001693616	0.0	W/1693616-1693682,1693759-1693934	AT3G05727.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05730.1); Has 13 Blast hits to 13 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G05727.1p  transcript_id AT3G05727.1  protein_id AT3G05727.1p  transcript_id AT3G05727.1  
At3g05730	chr3:001696070	0.0	W/1696070-1696136,1696297-1696490	AT3G05730.1  CDS  gene_syn F18C1.19  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05727.1); Has 12 Blast hits to 12 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G05730.1p  transcript_id AT3G05730.1  protein_id AT3G05730.1p  transcript_id AT3G05730.1  
At3g05740	chr3:001698180	0.0	W/1698180-1698294,1698393-1698742,1699004-1699255,1699388-1699551,1699661-1699757,1699857-1699900,1700063-1700177,1700343-1700696,1700774-1700998,1701124-1701228	AT3G05740.1  CDS  gene_syn Arabidopsis RecQ helicase l1, F18C1.21, RECQI1  gene RECQI1  go_process DNA recombination|GO:0006310||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_component cellular_component|GO:0005575||ND  go_function ATP-dependent helicase activity|GO:0008026||ISS  product RECQI1 (Arabidopsis RecQ helicase l1); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding  note Arabidopsis RecQ helicase l1 (RECQI1); FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: DNA recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal region (InterPro:IPR018329), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RECQ4A; ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding (TAIR:AT1G10930.1); Has 14278 Blast hits to 14226 proteins in 1479 species: Archae - 224; Bacteria - 6865; Metazoa - 2454; Fungi - 1504; Plants - 698; Viruses - 8; Other Eukaryotes - 2525 (source: NCBI BLink).  protein_id AT3G05740.1p  transcript_id AT3G05740.1  protein_id AT3G05740.1p  transcript_id AT3G05740.1  
At3g05741	chr3:001701553	0.0	C/1701553-1702125	AT3G05741.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  product enzyme inhibitor/ pectinesterase  note enzyme inhibitor/ pectinesterase; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT3G17230.1); Has 43 Blast hits to 42 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G05741.1p  transcript_id AT3G05741.1  protein_id AT3G05741.1p  transcript_id AT3G05741.1  
At3g05746	chr3:001703250	0.0	W/1703250-1703408	AT3G05746.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G05746.1p  transcript_id AT3G05746.1  protein_id AT3G05746.1p  transcript_id AT3G05746.1  
At3g05750	chr3:001704677	0.0	W/1704677-1704800,1705045-1705103,1705174-1706760,1706911-1707546	AT3G05750.1  CDS  gene_syn F10A16.3, F10A16_3  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26910.1); Has 1939 Blast hits to 1263 proteins in 186 species: Archae - 4; Bacteria - 493; Metazoa - 564; Fungi - 152; Plants - 116; Viruses - 0; Other Eukaryotes - 610 (source: NCBI BLink).  protein_id AT3G05750.1p  transcript_id AT3G05750.1  protein_id AT3G05750.1p  transcript_id AT3G05750.1  
At3g05750	chr3:001705300	0.0	W/1705300-1706760,1706911-1707546	AT3G05750.2  CDS  gene_syn F10A16.3, F10A16_3  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26910.1); Has 1811 Blast hits to 1187 proteins in 175 species: Archae - 4; Bacteria - 522; Metazoa - 524; Fungi - 140; Plants - 102; Viruses - 0; Other Eukaryotes - 519 (source: NCBI BLink).  protein_id AT3G05750.2p  transcript_id AT3G05750.2  protein_id AT3G05750.2p  transcript_id AT3G05750.2  
At3g05755	chr3:001707738	0.0	C/1707738-1707809	AT3G05755.1  tRNA  gene_syn 60263.TRNA-PRO-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: CGG)  transcript_id AT3G05755.1  
At3g05760	chr3:001707981	0.0	W/1707981-1707998,1708079-1708159,1708244-1708268,1708337-1708419,1708876-1708908,1709003-1709081,1709215-1709267,1709366-1709426,1709620-1709702,1709818-1709910	AT3G05760.1  CDS  gene_syn F10A16.5, F10A16_5  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product nucleic acid binding / zinc ion binding  note nucleic acid binding / zinc ion binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, U1-type (InterPro:IPR003604); Has 629 Blast hits to 585 proteins in 146 species: Archae - 2; Bacteria - 14; Metazoa - 302; Fungi - 102; Plants - 28; Viruses - 2; Other Eukaryotes - 179 (source: NCBI BLink).  protein_id AT3G05760.1p  transcript_id AT3G05760.1  protein_id AT3G05760.1p  transcript_id AT3G05760.1  
At3g05770	chr3:001712100	0.0	C/1712100-1712165,1711309-1711701,1711123-1711232,1710821-1711035,1710328-1710776	AT3G05770.1  CDS  gene_syn F10A16.6, F10A16_6  go_component cellular_component|GO:0005575||ND  go_process pollen tube development|GO:0048868|19237690|IMP  product unknown protein  note unknown protein; INVOLVED IN: pollen tube development; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54300.1); Has 48 Blast hits to 48 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G05770.1p  transcript_id AT3G05770.1  protein_id AT3G05770.1p  transcript_id AT3G05770.1  
At3g05780	chr3:001719596	0.0	C/1719596-1719608,1719141-1719460,1718935-1719000,1718635-1718850,1718494-1718559,1718339-1718380,1718122-1718226,1717916-1718014,1717738-1717803,1717636-1717663,1717255-1717426,1717016-1717140,1716785-1716915,1716601-1716705,1716383-1716496,1715972-1716241,1715213-1715875,1714941-1715114	AT3G05780.1  CDS  gene_syn F10A16.7, F10A16_7, LON PROTEASE 3, LON3  gene LON3  function Encodes a member of the Lon protease-like proteins (Lon1/At5g26860, Lon2/At5g47040, Lon3/At3g05780, Lon4/At3g05790). Lon is a multifunctional ATP-dependent protease which exists in bacteria, archaea and within organelles in eukaryotic cells. Lon proteases are responsible for the degradation of abnormal, damaged and unstable proteins.  go_process proteolysis|GO:0006508||IEA  go_process ATP-dependent proteolysis|GO:0006510||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP-dependent peptidase activity|GO:0004176||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function ATP-dependent peptidase activity|GO:0004176||ISS  go_function ATP binding|GO:0005524||ISS  go_function serine-type peptidase activity|GO:0008236||ISS  product LON3 (LON PROTEASE 3); ATP binding / ATP-dependent peptidase/ nucleoside-triphosphatase/ nucleotide binding / serine-type endopeptidase/ serine-type peptidase  note LON PROTEASE 3 (LON3); FUNCTIONS IN: in 6 functions; INVOLVED IN: proteolysis, ATP-dependent proteolysis; LOCATED IN: mitochondrion; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Peptidase S16, active site (InterPro:IPR008268), Peptidase S16, ATP-dependent protease La (InterPro:IPR004815), Peptidase S16, lon N-terminal (InterPro:IPR003111), Peptidase S16, lon C-terminal (InterPro:IPR008269), ATPase, AAA+ type, core (InterPro:IPR003593), Peptidase S16, Lon protease, C-terminal region (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: LON4 (LON PROTEASE 4); ATP binding / ATP-dependent peptidase/ nucleoside-triphosphatase/ nucleotide binding / serine-type endopeptidase/ serine-type peptidase (TAIR:AT3G05790.1); Has 10508 Blast hits to 10408 proteins in 1386 species: Archae - 262; Bacteria - 4349; Metazoa - 340; Fungi - 375; Plants - 155; Viruses - 7; Other Eukaryotes - 5020 (source: NCBI BLink).  protein_id AT3G05780.1p  transcript_id AT3G05780.1  protein_id AT3G05780.1p  transcript_id AT3G05780.1  
At3g05790	chr3:001724949	0.0	C/1724949-1725182,1724475-1724540,1724189-1724374,1724031-1724096,1723826-1723873,1723542-1723697,1723392-1723490,1723213-1723278,1723014-1723100,1722889-1722928,1722609-1722780,1722364-1722488,1722141-1722271,1721967-1722071,1721731-1721847,1721398-1721565,1721204-1721305,1720435-1721121,1720154-1720327	AT3G05790.1  CDS  gene_syn F10A16.8, F10A16_8, LON PROTEASE 4, LON4  gene LON4  function Encodes a member of the Lon protease-like proteins (Lon1/At5g26860, Lon2/At5g47040, Lon3/At3g05780, Lon4/At3g05790). Lon is a multifunctional ATP-dependent protease which exists in bacteria, archaea and within organelles in eukaryotic cells. Lon proteases are responsible for the degradation of abnormal, damaged and unstable proteins.  go_process proteolysis|GO:0006508||IEA  go_process ATP-dependent proteolysis|GO:0006510||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP-dependent peptidase activity|GO:0004176||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component mitochondrion|GO:0005739|17478548|IDA  go_component chloroplast|GO:0009507|17478548|IDA  go_function ATP-dependent peptidase activity|GO:0004176||ISS  go_function ATP binding|GO:0005524||ISS  go_function serine-type peptidase activity|GO:0008236||ISS  product LON4 (LON PROTEASE 4); ATP binding / ATP-dependent peptidase/ nucleoside-triphosphatase/ nucleotide binding / serine-type endopeptidase/ serine-type peptidase  note LON PROTEASE 4 (LON4); FUNCTIONS IN: in 6 functions; INVOLVED IN: proteolysis, ATP-dependent proteolysis; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Peptidase S16, active site (InterPro:IPR008268), Peptidase S16, ATP-dependent protease La (InterPro:IPR004815), Peptidase S16, lon N-terminal (InterPro:IPR003111), Peptidase S16, lon C-terminal (InterPro:IPR008269), ATPase, AAA+ type, core (InterPro:IPR003593), Peptidase S16, Lon protease, C-terminal region (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: LON1 (LON PROTEASE 1); ATP binding / ATP-dependent peptidase/ serine-type peptidase (TAIR:AT5G26860.1); Has 12101 Blast hits to 11039 proteins in 1428 species: Archae - 221; Bacteria - 5461; Metazoa - 438; Fungi - 334; Plants - 146; Viruses - 3; Other Eukaryotes - 5498 (source: NCBI BLink).  protein_id AT3G05790.1p  transcript_id AT3G05790.1  protein_id AT3G05790.1p  transcript_id AT3G05790.1  
At3g05800	chr3:001727476	0.0	W/1727476-1728111	AT3G05800.1  CDS  gene_syn F10A16.9, F10A16_9  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT1G09250.1); Has 83 Blast hits to 83 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G05800.1p  transcript_id AT3G05800.1  protein_id AT3G05800.1p  transcript_id AT3G05800.1  
At3g05810	chr3:001732210	0.0	C/1732210-1732321,1731681-1731829,1731259-1731336	AT3G05810.1  CDS  gene_syn F10A16.10, F10A16_10  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26800.1); Has 32 Blast hits to 32 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G05810.1p  transcript_id AT3G05810.1  protein_id AT3G05810.1p  transcript_id AT3G05810.1  
At3g05820	chr3:001735734	0.0	C/1735734-1735757,1734949-1735656,1734614-1734773,1734239-1734450,1733653-1734152,1733523-1733571,1733119-1733445	AT3G05820.1  CDS  gene_syn F10A16.11, F10A16_11  go_function catalytic activity|GO:0003824||IEA  go_process biological_process|GO:0008150||ND  go_function beta-fructofuranosidase activity|GO:0004564||ISS  product beta-fructofuranosidase/ catalytic  note beta-fructofuranosidase/ catalytic; FUNCTIONS IN: catalytic activity, beta-fructofuranosidase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Plant neutral invertase (InterPro:IPR006937), Six-hairpin glycosidase-like (InterPro:IPR008928); BEST Arabidopsis thaliana protein match is: beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative (TAIR:AT1G56560.1); Has 515 Blast hits to 514 proteins in 79 species: Archae - 0; Bacteria - 108; Metazoa - 0; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 234 (source: NCBI BLink).  protein_id AT3G05820.1p  transcript_id AT3G05820.1  protein_id AT3G05820.1p  transcript_id AT3G05820.1  
At3g05830	chr3:001736796	0.0	W/1736796-1736963,1737147-1737254,1737617-1738081,1738186-1738287,1738398-1738565	AT3G05830.1  CDS  function Encodes alpha-helical IF (intermediate filament)-like protein.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26770.2); Has 47453 Blast hits to 23625 proteins in 1317 species: Archae - 488; Bacteria - 3558; Metazoa - 27939; Fungi - 3009; Plants - 1369; Viruses - 174; Other Eukaryotes - 10916 (source: NCBI BLink).  protein_id AT3G05830.1p  transcript_id AT3G05830.1  protein_id AT3G05830.1p  transcript_id AT3G05830.1  
At3g05835	chr3:001738791	0.0	W/1738791-1738864	AT3G05835.1  tRNA  gene_syn 60263.TRNA-ILE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ile (anticodon: TAT)  transcript_id AT3G05835.1  
At3g05840	chr3:001740793	0.0	W/1740793-1740906,1740993-1741085,1741175-1741234,1741314-1741586,1741668-1741799,1741888-1742028,1742130-1742180,1742277-1742372,1742463-1742546,1742642-1742744,1742845-1742927	AT3G05840.1  CDS  gene_syn ASKGAMMA, ATSK12, F10A16.14, F10A16_14  gene ATSK12  function encodes a SHAGGY-like kinase involved in meristem organization.  go_component cytosol|GO:0005829|18433157|IDA  go_process meristem structural organization|GO:0009933|10758494|IMP  go_process phosphorylation|GO:0016310|7509023|IDA  go_process gynoecium development|GO:0048467|10758494|IMP  go_function protein kinase activity|GO:0004672||ISS  go_function protein serine/threonine kinase activity|GO:0004674|9611268|ISS  product ATSK12; protein kinase/ protein serine/threonine kinase  note ATSK12; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity; INVOLVED IN: meristem structural organization, gynoecium development, phosphorylation; LOCATED IN: cytosol; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: ATSK11; protein kinase/ protein serine/threonine kinase (TAIR:AT5G26751.1); Has 77592 Blast hits to 76513 proteins in 2491 species: Archae - 34; Bacteria - 6051; Metazoa - 32762; Fungi - 7826; Plants - 15144; Viruses - 354; Other Eukaryotes - 15421 (source: NCBI BLink).  protein_id AT3G05840.1p  transcript_id AT3G05840.1  protein_id AT3G05840.1p  transcript_id AT3G05840.1  
At3g05840	chr3:001740793	0.0	W/1740793-1740906,1740993-1741085,1741175-1741234,1741314-1741586,1741668-1741799,1741888-1742028,1742130-1742180,1742277-1742372,1742463-1742546,1742642-1742744,1742845-1742927	AT3G05840.2  CDS  gene_syn ASKGAMMA, ATSK12, F10A16.14, F10A16_14  gene ATSK12  function encodes a SHAGGY-like kinase involved in meristem organization.  go_component cytosol|GO:0005829|18433157|IDA  go_process meristem structural organization|GO:0009933|10758494|IMP  go_process phosphorylation|GO:0016310|7509023|IDA  go_process gynoecium development|GO:0048467|10758494|IMP  go_function protein kinase activity|GO:0004672||ISS  go_function protein serine/threonine kinase activity|GO:0004674|9611268|ISS  product ATSK12; protein kinase/ protein serine/threonine kinase  note ATSK12; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity; INVOLVED IN: meristem structural organization, gynoecium development, phosphorylation; LOCATED IN: cytosol; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATSK11; protein kinase/ protein serine/threonine kinase (TAIR:AT5G26751.1); Has 77592 Blast hits to 76513 proteins in 2491 species: Archae - 34; Bacteria - 6051; Metazoa - 32762; Fungi - 7826; Plants - 15144; Viruses - 354; Other Eukaryotes - 15421 (source: NCBI BLink).  protein_id AT3G05840.2p  transcript_id AT3G05840.2  protein_id AT3G05840.2p  transcript_id AT3G05840.2  
At3g05850	chr3:001743413	0.0	C/1743413-1746785	AT3G05850.1  mRNA_TE_gene  pseudo  gene_syn F10A16.15, F10A16_15  note Transposable element gene, Mutator-like transposase family, has a 1.9e-58 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At3g05858	chr3:001749464	0.0	W/1749464-1749736	AT3G05858.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 26 Blast hits to 25 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G05858.1p  transcript_id AT3G05858.1  protein_id AT3G05858.1p  transcript_id AT3G05858.1  
At3g05860	chr3:001751813	0.0	C/1751813-1752355,1751406-1751612	AT3G05860.3  CDS  gene_syn F10A16.16, F10A16_16  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product MADS-box protein (AGL45)  note MADS-box protein (AGL45); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL46 (AGAMOUS-LIKE 46); DNA binding / transcription factor (TAIR:AT2G28700.1); Has 3805 Blast hits to 3803 proteins in 494 species: Archae - 0; Bacteria - 2; Metazoa - 462; Fungi - 190; Plants - 3101; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT3G05860.3p  transcript_id AT3G05860.3  protein_id AT3G05860.3p  transcript_id AT3G05860.3  
At3g05860	chr3:001751813	0.0	C/1751813-1752355,1751655-1751735	AT3G05860.2  CDS  gene_syn F10A16.16, F10A16_16  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product MADS-box protein (AGL45)  note MADS-box protein (AGL45); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL46 (AGAMOUS-LIKE 46); DNA binding / transcription factor (TAIR:AT2G28700.1); Has 3793 Blast hits to 3791 proteins in 491 species: Archae - 0; Bacteria - 0; Metazoa - 462; Fungi - 189; Plants - 3096; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT3G05860.2p  transcript_id AT3G05860.2  protein_id AT3G05860.2p  transcript_id AT3G05860.2  
At3g05860	chr3:001751813	0.0	C/1751813-1752355,1751703-1751735,1751406-1751612	AT3G05860.1  CDS  gene_syn F10A16.16, F10A16_16  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product MADS-box protein (AGL45)  note MADS-box protein (AGL45); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL46 (AGAMOUS-LIKE 46); DNA binding / transcription factor (TAIR:AT2G28700.1); Has 3819 Blast hits to 3811 proteins in 495 species: Archae - 0; Bacteria - 0; Metazoa - 462; Fungi - 189; Plants - 3106; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT3G05860.1p  transcript_id AT3G05860.1  protein_id AT3G05860.1p  transcript_id AT3G05860.1  
At3g05870	chr3:001754463	0.0	W/1754463-1754520,1754687-1754802	AT3G05870.1  CDS  gene_syn APC11, F10A16.17, F10A16_17  gene APC11  function Subunit of the anaphase promoting complex, a ubiquitin ligase complex that regulates progression through the cell cycle.  go_process regulation of mitotic cell cycle|GO:0007346|14508008|ISS  go_function ubiquitin-protein ligase activity|GO:0004842|14508008|ISS  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product APC11; protein binding / ubiquitin-protein ligase/ zinc ion binding  note APC11; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: regulation of mitotic cell cycle; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: RBX1 (RING-BOX 1); protein binding (TAIR:AT5G20570.3); Has 774 Blast hits to 774 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 397; Fungi - 140; Plants - 78; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT3G05870.1p  transcript_id AT3G05870.1  protein_id AT3G05870.1p  transcript_id AT3G05870.1  
At3g05880	chr3:001756414	0.0	C/1756414-1756494,1756195-1756278	AT3G05880.1  CDS  gene_syn F10A16.18, F10A16_18, RARE-COLD-INDUCIBLE 2A, RCI2A  gene RCI2A  function Induced by low temperatures, dehydration and salt stress and ABA. Encodes a small (54 amino acids), highly hydrophobic protein that bears two potential transmembrane domains.  go_component integral to membrane|GO:0016021|9342870|ISS  go_process response to cold|GO:0009409|9342870|TAS  go_process response to abscisic acid stimulus|GO:0009737|15860016|TAS  go_process hyperosmotic salinity response|GO:0042538|10835350|IGI  go_process hyperosmotic salinity response|GO:0042538|9342870|TAS  go_function molecular_function|GO:0003674||ND  product RCI2A (RARE-COLD-INDUCIBLE 2A)  note RARE-COLD-INDUCIBLE 2A (RCI2A); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: hyperosmotic salinity response, response to cold, response to abscisic acid stimulus; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0057 (InterPro:IPR000612); BEST Arabidopsis thaliana protein match is: RCI2B (RARE-COLD-INDUCIBLE 2B) (TAIR:AT3G05890.1); Has 908 Blast hits to 908 proteins in 327 species: Archae - 0; Bacteria - 468; Metazoa - 40; Fungi - 186; Plants - 185; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT3G05880.1p  transcript_id AT3G05880.1  protein_id AT3G05880.1p  transcript_id AT3G05880.1  
At3g05890	chr3:001758372	0.0	C/1758372-1758452,1758179-1758262	AT3G05890.1  CDS  gene_syn F2O10.15, F2O10_15, RARE-COLD-INDUCIBLE 2B, RCI2B  gene RCI2B  go_component integral to membrane|GO:0016021|9342870|ISS  go_process response to cold|GO:0009409|9342870|IMP  product RCI2B (RARE-COLD-INDUCIBLE 2B)  note RARE-COLD-INDUCIBLE 2B (RCI2B); INVOLVED IN: response to cold; LOCATED IN: integral to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0057 (InterPro:IPR000612); BEST Arabidopsis thaliana protein match is: RCI2A (RARE-COLD-INDUCIBLE 2A) (TAIR:AT3G05880.1); Has 905 Blast hits to 905 proteins in 327 species: Archae - 0; Bacteria - 464; Metazoa - 38; Fungi - 185; Plants - 185; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT3G05890.1p  transcript_id AT3G05890.1  protein_id AT3G05890.1p  transcript_id AT3G05890.1  
At3g05905	chr3:001760905	0.0	W/1760905-1764212	AT3G05905.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT3G05900  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G05905.1  
At3g05900	chr3:001763810	0.0	C/1763810-1763854,1761408-1763384	AT3G05900.1  CDS  gene_syn F2O10.14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product neurofilament protein-related  note neurofilament protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G22795.1); Has 88911 Blast hits to 46125 proteins in 1886 species: Archae - 581; Bacteria - 14673; Metazoa - 38145; Fungi - 9328; Plants - 3296; Viruses - 563; Other Eukaryotes - 22325 (source: NCBI BLink).  protein_id AT3G05900.1p  transcript_id AT3G05900.1  protein_id AT3G05900.1p  transcript_id AT3G05900.1  
At3g05910	chr3:001767045	0.0	C/1767045-1767240,1766537-1766619,1766332-1766461,1766163-1766236,1765841-1765927,1765624-1765748,1765465-1765525,1765323-1765376,1765157-1765234,1764954-1765059,1764718-1764863,1764509-1764616	AT3G05910.1  CDS  gene_syn F2O10.13  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function carboxylesterase activity|GO:0004091||ISS  product pectinacetylesterase, putative  note pectinacetylesterase, putative; FUNCTIONS IN: carboxylesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinacetylesterase (InterPro:IPR004963); BEST Arabidopsis thaliana protein match is: pectinacetylesterase, putative (TAIR:AT5G26670.1); Has 393 Blast hits to 387 proteins in 77 species: Archae - 0; Bacteria - 36; Metazoa - 114; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT3G05910.1p  transcript_id AT3G05910.1  protein_id AT3G05910.1p  transcript_id AT3G05910.1  
At3g05920	chr3:001769511	0.0	C/1769511-1769522,1769362-1769437,1768991-1769283	AT3G05920.1  CDS  gene_syn F2O10.12, F2O10_12  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT5G26690.1); Has 3888 Blast hits to 1797 proteins in 258 species: Archae - 6; Bacteria - 469; Metazoa - 655; Fungi - 165; Plants - 1690; Viruses - 399; Other Eukaryotes - 504 (source: NCBI BLink).  protein_id AT3G05920.1p  transcript_id AT3G05920.1  protein_id AT3G05920.1p  transcript_id AT3G05920.1  
At3g05932	chr3:001770279	0.0	C/1770279-1771716	AT3G05932.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT3G05930  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G05932.1  
At3g05930	chr3:001770377	0.0	W/1770377-1770488,1770636-1771183	AT3G05930.1  CDS  gene_syn F2O10.11, F2O10_11, GERMIN-LIKE PROTEIN 8, GLP8  gene GLP8  function germin-like protein (GLP8)  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process biological_process|GO:0008150||ND  product GLP8 (GERMIN-LIKE PROTEIN 8); manganese ion binding / nutrient reservoir  note GERMIN-LIKE PROTEIN 8 (GLP8); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: germin-like protein, putative (TAIR:AT5G26700.1); Has 963 Blast hits to 960 proteins in 133 species: Archae - 0; Bacteria - 93; Metazoa - 0; Fungi - 47; Plants - 815; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT3G05930.1p  transcript_id AT3G05930.1  protein_id AT3G05930.1p  transcript_id AT3G05930.1  
At3g05935	chr3:001772224	0.0	C/1772224-1772511	AT3G05935.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G05935.1p  transcript_id AT3G05935.1  protein_id AT3G05935.1p  transcript_id AT3G05935.1  
At3g05936	chr3:001774062	0.0	C/1774062-1774403	AT3G05936.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 5 Blast hits to 5 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G05936.1p  transcript_id AT3G05936.1  protein_id AT3G05936.1p  transcript_id AT3G05936.1  
At3g05937	chr3:001776158	0.0	C/1776158-1776319	AT3G05937.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G05937.1p  transcript_id AT3G05937.1  protein_id AT3G05937.1p  transcript_id AT3G05937.1  
At3g05940	chr3:001779493	0.0	C/1779493-1779648,1779298-1779371,1778966-1779115,1778392-1778677,1778043-1778276,1777592-1777960	AT3G05940.1  CDS  gene_syn F2O10.10  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF300 (InterPro:IPR005178); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26740.3); Has 669 Blast hits to 664 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 318; Fungi - 124; Plants - 129; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT3G05940.1p  transcript_id AT3G05940.1  protein_id AT3G05940.1p  transcript_id AT3G05940.1  
At3g05950	chr3:001781838	0.0	C/1781838-1781964,1781130-1781692	AT3G05950.1  CDS  gene_syn F2O10.9, F2O10_9  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process biological_process|GO:0008150||ND  product germin-like protein, putative  note germin-like protein, putative; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: sperm cell, male gametophyte, flower, root, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: GER2 (GERMIN-LIKE PROTEIN 2); oxalate oxidase (TAIR:AT5G39190.1); Has 869 Blast hits to 867 proteins in 84 species: Archae - 0; Bacteria - 18; Metazoa - 0; Fungi - 24; Plants - 819; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT3G05950.1p  transcript_id AT3G05950.1  protein_id AT3G05950.1p  transcript_id AT3G05950.1  
At3g05960	chr3:001785208	0.0	C/1785208-1785334,1784136-1785082,1783587-1784036	AT3G05960.1  CDS  gene_syn ATSTP6, F2O10.8, F2O10_8, STP6, SUGAR TRANSPORTER 6  gene STP6  function Encodes a hexose sugar transporter that is expressed in pollen. STP6 may play a role in providing sugars during late pollen maturation or pollen tube germination.  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  go_process transmembrane carbohydrate transport|GO:0034219|12529516|TAS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  go_function monosaccharide transmembrane transporter activity|GO:0015145|12529516|IDA  product STP6 (SUGAR TRANSPORTER 6); carbohydrate transmembrane transporter/ monosaccharide transmembrane transporter/ sugar:hydrogen symporter  note SUGAR TRANSPORTER 6 (STP6); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, monosaccharide transmembrane transporter activity; INVOLVED IN: transmembrane carbohydrate transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter, putative (TAIR:AT5G26250.1); Has 15696 Blast hits to 15370 proteins in 1078 species: Archae - 222; Bacteria - 5778; Metazoa - 3072; Fungi - 4272; Plants - 1389; Viruses - 0; Other Eukaryotes - 963 (source: NCBI BLink).  protein_id AT3G05960.1p  transcript_id AT3G05960.1  protein_id AT3G05960.1p  transcript_id AT3G05960.1  
At3g05970	chr3:001791614	0.0	C/1791614-1791746,1791470-1791530,1791310-1791387,1791145-1791216,1790969-1791050,1790780-1790885,1790620-1790696,1790352-1790396,1790160-1790246,1789683-1789772,1789450-1789529,1789192-1789285,1788951-1789039,1788777-1788865,1788465-1788594,1788138-1788256,1787912-1788035,1787735-1787821,1787403-1787506,1787235-1787320,1787072-1787158,1786890-1786976,1786510-1786608	AT3G05970.1  CDS  gene_syn F2O10.7, F2O10_7, LACS6, long-chain acyl-CoA synthetase 6  gene LACS6  function encode peroxisomal long-chain acyl-CoA synthetase (LACS) isozymes  go_component membrane|GO:0016020|17432890|IDA  go_process long-chain fatty acid metabolic process|GO:0001676||TAS  go_function long-chain-fatty-acid-CoA ligase activity|GO:0004467|16256065|TAS  product LACS6 (long-chain acyl-CoA synthetase 6); long-chain-fatty-acid-CoA ligase  note long-chain acyl-CoA synthetase 6 (LACS6); FUNCTIONS IN: long-chain-fatty-acid-CoA ligase activity; INVOLVED IN: long-chain fatty acid metabolic process; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: LACS7 (LONG-CHAIN ACYL-COA SYNTHETASE 7); long-chain-fatty-acid-CoA ligase/ protein binding (TAIR:AT5G27600.1); Has 35798 Blast hits to 34414 proteins in 1968 species: Archae - 442; Bacteria - 19235; Metazoa - 2226; Fungi - 1458; Plants - 1157; Viruses - 1; Other Eukaryotes - 11279 (source: NCBI BLink).  protein_id AT3G05970.1p  transcript_id AT3G05970.1  protein_id AT3G05970.1p  transcript_id AT3G05970.1  
At3g05975	chr3:001792145	0.0	C/1792145-1792714	AT3G05975.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54200.1); Has 119 Blast hits to 118 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 119; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G05975.1p  transcript_id AT3G05975.1  protein_id AT3G05975.1p  transcript_id AT3G05975.1  
At3g05980	chr3:001795514	0.0	W/1795514-1796251	AT3G05980.1  CDS  gene_syn F2O10.6, F2O10_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19340.1); Has 129 Blast hits to 129 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 38; Fungi - 4; Plants - 77; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT3G05980.1p  transcript_id AT3G05980.1  protein_id AT3G05980.1p  transcript_id AT3G05980.1  
At3g05990	chr3:001799654	0.0	C/1799654-1799732,1799014-1799566,1798431-1798891,1798191-1798326,1798028-1798099,1797879-1797947,1797704-1797775,1797252-1797323,1797116-1797155	AT3G05990.1  CDS  gene_syn F2O10.5, F2O10_5  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT3G19230.1); Has 27870 Blast hits to 7046 proteins in 368 species: Archae - 4; Bacteria - 364; Metazoa - 308; Fungi - 19; Plants - 25775; Viruses - 0; Other Eukaryotes - 1400 (source: NCBI BLink).  protein_id AT3G05990.1p  transcript_id AT3G05990.1  protein_id AT3G05990.1p  transcript_id AT3G05990.1  
At3g06000	chr3:001801446	0.0	W/1801446-1802081	AT3G06000.1  CDS  gene_syn F2O10.4, F2O10_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2); RAN GTPase activator (TAIR:AT5G19320.1); Has 1990 Blast hits to 1209 proteins in 127 species: Archae - 0; Bacteria - 143; Metazoa - 1145; Fungi - 36; Plants - 139; Viruses - 0; Other Eukaryotes - 527 (source: NCBI BLink).  protein_id AT3G06000.1p  transcript_id AT3G06000.1  protein_id AT3G06000.1p  transcript_id AT3G06000.1  
At3g06010	chr3:001807069	0.0	C/1807069-1807284,1806646-1806799,1806406-1806509,1806117-1806305,1805652-1805852,1805141-1805536,1804777-1805036,1804467-1804685,1804177-1804384,1803939-1804092,1803218-1803823,1802435-1803126	AT3G06010.1  CDS  gene_syn ATCHR12, F2O10.3, F2O10_3  gene ATCHR12  function Encodes AtCHR12, a SNF2/Brahma-type chromatin-remodeling protein. AtCHR12 mediates temporary growth arrest in Arabidopsis upon perceiving environmental stress.  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process response to heat|GO:0009408|17605754|IMP  go_process response to water deprivation|GO:0009414|17605754|IMP  go_process response to salt stress|GO:0009651|17605754|IMP  go_function DNA binding|GO:0003677||ISS  go_function ATP binding|GO:0005524||ISS  product ATCHR12; ATP binding / DNA binding / helicase/ nucleic acid binding  note ATCHR12; FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: response to salt stress, response to water deprivation, response to heat; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: homeotic gene regulator, putative (TAIR:AT5G19310.1); Has 17732 Blast hits to 13994 proteins in 1249 species: Archae - 91; Bacteria - 3217; Metazoa - 5773; Fungi - 3046; Plants - 940; Viruses - 230; Other Eukaryotes - 4435 (source: NCBI BLink).  protein_id AT3G06010.1p  transcript_id AT3G06010.1  protein_id AT3G06010.1p  transcript_id AT3G06010.1  
At3g06019	chr3:001813114	0.0	C/1813114-1813224	AT3G06019.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G06019.1p  transcript_id AT3G06019.1  protein_id AT3G06019.1p  transcript_id AT3G06019.1  
At3g06020	chr3:001813267	0.0	W/1813267-1814169	AT3G06020.1  CDS  gene_syn F2O10.2, F2O10_2  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19260.1); Has 8245 Blast hits to 1864 proteins in 157 species: Archae - 19; Bacteria - 78; Metazoa - 5821; Fungi - 284; Plants - 154; Viruses - 100; Other Eukaryotes - 1789 (source: NCBI BLink).  protein_id AT3G06020.1p  transcript_id AT3G06020.1  protein_id AT3G06020.1p  transcript_id AT3G06020.1  
At3g06030	chr3:001822412	0.0	C/1822412-1822705,1822278-1822319,1822111-1822176,1821915-1822025,1821746-1821826,1821591-1821668,1821416-1821498,1821172-1821253,1820968-1821068,1820793-1820832,1820615-1820674,1820500-1820546,1820185-1820407,1819868-1820095,1819192-1819490,1819045-1819106,1818895-1818953	AT3G06030.1  CDS  gene_syn ANP3, ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 3, F24F17.1, F24F17_1, MAPKKK12  gene ANP3  function NPK1-related protein kinase 3  go_component apoplast|GO:0048046|18538804|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product ANP3 (ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 3); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 3 (ANP3); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: apoplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Mitogen activated protein kinase kinase kinase 3 (InterPro:IPR015748), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ANP1 (ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 1); MAP kinase kinase kinase/ kinase (TAIR:AT1G09000.1); Has 98512 Blast hits to 96682 proteins in 3391 species: Archae - 77; Bacteria - 8549; Metazoa - 43271; Fungi - 8830; Plants - 19026; Viruses - 508; Other Eukaryotes - 18251 (source: NCBI BLink).  protein_id AT3G06030.1p  transcript_id AT3G06030.1  protein_id AT3G06030.1p  transcript_id AT3G06030.1  
At3g06035	chr3:001824032	0.0	C/1824032-1824110,1823172-1823695	AT3G06035.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19250.1); Has 44 Blast hits to 43 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G06035.1p  transcript_id AT3G06035.1  protein_id AT3G06035.1p  transcript_id AT3G06035.1  
At3g06040	chr3:001824516	0.0	C/1824516-1825076	AT3G06040.1  CDS  gene_syn F24F17.2, F24F17_2  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L12 family protein  note ribosomal protein L12 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L12, chloroplast (InterPro:IPR015608), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719), Ribosomal protein L7/L12, C-terminal (InterPro:IPR013823); BEST Arabidopsis thaliana protein match is: ribosomal protein L12 family protein (TAIR:AT4G36420.1); Has 5695 Blast hits to 5695 proteins in 1555 species: Archae - 0; Bacteria - 3184; Metazoa - 132; Fungi - 84; Plants - 176; Viruses - 0; Other Eukaryotes - 2119 (source: NCBI BLink).  protein_id AT3G06040.1p  transcript_id AT3G06040.1  protein_id AT3G06040.1p  transcript_id AT3G06040.1  
At3g06040	chr3:001824516	0.0	C/1824516-1825076	AT3G06040.2  CDS  gene_syn F24F17.2, F24F17_2  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L12 family protein  note ribosomal protein L12 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L12, chloroplast (InterPro:IPR015608), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719), Ribosomal protein L7/L12, C-terminal (InterPro:IPR013823); BEST Arabidopsis thaliana protein match is: ribosomal protein L12 family protein (TAIR:AT4G36420.1); Has 5695 Blast hits to 5695 proteins in 1555 species: Archae - 0; Bacteria - 3184; Metazoa - 132; Fungi - 84; Plants - 176; Viruses - 0; Other Eukaryotes - 2119 (source: NCBI BLink).  protein_id AT3G06040.2p  transcript_id AT3G06040.2  protein_id AT3G06040.2p  transcript_id AT3G06040.2  
At3g06040	chr3:001824516	0.0	C/1824516-1825076	AT3G06040.3  CDS  gene_syn F24F17.2, F24F17_2  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L12 family protein  note ribosomal protein L12 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L12, chloroplast (InterPro:IPR015608), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719), Ribosomal protein L7/L12, C-terminal (InterPro:IPR013823); BEST Arabidopsis thaliana protein match is: ribosomal protein L12 family protein (TAIR:AT4G36420.1); Has 5695 Blast hits to 5695 proteins in 1555 species: Archae - 0; Bacteria - 3184; Metazoa - 132; Fungi - 84; Plants - 176; Viruses - 0; Other Eukaryotes - 2119 (source: NCBI BLink).  protein_id AT3G06040.3p  transcript_id AT3G06040.3  protein_id AT3G06040.3p  transcript_id AT3G06040.3  
At3g06050	chr3:001827594	0.0	C/1827594-1827809,1827478-1827507,1827227-1827385,1826507-1826601,1826311-1826416	AT3G06050.1  CDS  gene_syn ATPRXIIF, F24F17.3, F24F17_3, PEROXIREDOXIN IIF, PRXIIF  gene PRXIIF  function Encodes a mitochondrial matrix localized peroxiredoxin involved in redox homeostasis. Knockout mutants have reduced root growth under certain oxidative stress conditions.  go_component mitochondrion|GO:0005739|18385124|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial matrix|GO:0005759|15632145|IDA  go_process response to oxidative stress|GO:0006979|12492832|IDA  go_process response to oxidative stress|GO:0006979|15632145|IMP  go_function peroxidase activity|GO:0004601|15632145|IDA  go_function antioxidant activity|GO:0016209||ISS  product PRXIIF (PEROXIREDOXIN IIF); antioxidant/ peroxidase  note PEROXIREDOXIN IIF (PRXIIF); FUNCTIONS IN: peroxidase activity, antioxidant activity; INVOLVED IN: response to oxidative stress, response to cadmium ion; LOCATED IN: mitochondrion, mitochondrial matrix; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336), Redoxin (InterPro:IPR013740); BEST Arabidopsis thaliana protein match is: TPX1 (thioredoxin-dependent peroxidase 1); antioxidant/ oxidoreductase (TAIR:AT1G65980.1); Has 3114 Blast hits to 3114 proteins in 591 species: Archae - 2; Bacteria - 956; Metazoa - 153; Fungi - 203; Plants - 145; Viruses - 0; Other Eukaryotes - 1655 (source: NCBI BLink).  protein_id AT3G06050.1p  transcript_id AT3G06050.1  protein_id AT3G06050.1p  transcript_id AT3G06050.1  
At3g06060	chr3:001829624	0.0	C/1829624-1830160,1829291-1829438,1828395-1828689,1828296-1828296	AT3G06060.1  CDS  gene_syn F24F17.4, F24F17_4  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT5G19200.1); Has 73968 Blast hits to 73794 proteins in 2212 species: Archae - 452; Bacteria - 42733; Metazoa - 5080; Fungi - 4290; Plants - 1560; Viruses - 0; Other Eukaryotes - 19853 (source: NCBI BLink).  protein_id AT3G06060.1p  transcript_id AT3G06060.1  protein_id AT3G06060.1p  transcript_id AT3G06060.1  
At3g06070	chr3:001831721	0.0	C/1831721-1831846,1831305-1831634	AT3G06070.1  CDS  gene_syn F24F17.5, F24F17_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19190.1); Has 18 Blast hits to 18 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G06070.1p  transcript_id AT3G06070.1  protein_id AT3G06070.1p  transcript_id AT3G06070.1  
At3g06080	chr3:001837055	0.0	C/1837055-1837524,1835740-1836129,1835462-1835642	AT3G06080.1  CDS  gene_syn F24F17.6, F24F17_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19160.1); Has 682 Blast hits to 675 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 682; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G06080.1p  transcript_id AT3G06080.1  protein_id AT3G06080.1p  transcript_id AT3G06080.1  
At3g06080	chr3:001837055	0.0	C/1837055-1837524,1835740-1836129,1835484-1835642,1834959-1835349	AT3G06080.2  CDS  gene_syn F24F17.6, F24F17_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19160.1); Has 709 Blast hits to 698 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 709; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G06080.2p  transcript_id AT3G06080.2  protein_id AT3G06080.2p  transcript_id AT3G06080.2  
At3g06090	chr3:001840773	0.0	W/1840773-1841012	AT3G06090.1  CDS  gene_syn F28L1.2, F28L1_2  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower, seed, leaf; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, LP.08 eight leaves visible; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G06090.1p  transcript_id AT3G06090.1  protein_id AT3G06090.1p  transcript_id AT3G06090.1  
At3g06100	chr3:001842794	0.0	C/1842794-1842934,1842393-1842617,1841959-1842156,1841690-1841751,1841388-1841589	AT3G06100.1  CDS  gene_syn F28L1.3, F28L1_3, NIP7;1, NLM6, NLM8, NOD26-LIKE INTRINSIC PROTEIN 7;1, NOD26-LIKE MIP 6, NOD26-LIKE MIP 8  gene NIP7;1  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_function water channel activity|GO:0015250||ISS  product NIP7;1 (NOD26-LIKE INTRINSIC PROTEIN 7;1); water channel  note NOD26-LIKE INTRINSIC PROTEIN 7;1 (NIP7;1); FUNCTIONS IN: water channel activity; INVOLVED IN: transport; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: NIP4;1 (NOD26-LIKE INTRINSIC PROTEIN 4;1); water channel (TAIR:AT5G37810.1); Has 6831 Blast hits to 6706 proteins in 1259 species: Archae - 81; Bacteria - 2782; Metazoa - 1176; Fungi - 290; Plants - 1403; Viruses - 4; Other Eukaryotes - 1095 (source: NCBI BLink).  protein_id AT3G06100.1p  transcript_id AT3G06100.1  protein_id AT3G06100.1p  transcript_id AT3G06100.1  
At3g06105	chr3:001843324	0.0	C/1843324-1843394	AT3G06105.1  tRNA  gene_syn 60732.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: GCC)  transcript_id AT3G06105.1  
At3g06110	chr3:001843517	0.0	W/1843517-1843606,1843718-1843853,1843937-1844057,1844421-1844577	AT3G06110.2  CDS  gene_syn F28L1.5, F28L1_5, MAPK PHOSPHATASE 2, MKP2  gene MKP2  function Encodes a nuclear-localized MAP kinase phosphatase. Plants with reduced levels of MKP2 transcripts are hypersensitive to ozone and ozone-mediated activation of MPK3 and MPK6 is prolonged in these plants.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component nucleus|GO:0005634|17586809|IDA  go_process response to stress|GO:0006950|17586809|IMP  go_process protein kinase cascade|GO:0007243|17586809|IC  go_process response to ozone|GO:0010193|17586809|IMP  go_process negative regulation of MAP kinase activity|GO:0043407|17586809|IMP  go_function protein tyrosine/serine/threonine phosphatase activity|GO:0008138||ISS  go_function MAP kinase phosphatase activity|GO:0033549|17586809|IDA  product MKP2 (MAPK PHOSPHATASE 2); MAP kinase phosphatase/ protein tyrosine/serine/threonine phosphatase  note MAPK PHOSPHATASE 2 (MKP2); FUNCTIONS IN: MAP kinase phosphatase activity, protein tyrosine/serine/threonine phosphatase activity; INVOLVED IN: protein kinase cascade, response to ozone, response to stress, negative regulation of MAP kinase activity; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase (InterPro:IPR000387), Protein-tyrosine phosphatase, dual specificity (InterPro:IPR000340); BEST Arabidopsis thaliana protein match is: dual specificity protein phosphatase (DsPTP1) (TAIR:AT3G23610.2); Has 3342 Blast hits to 3332 proteins in 291 species: Archae - 14; Bacteria - 93; Metazoa - 1855; Fungi - 293; Plants - 138; Viruses - 189; Other Eukaryotes - 760 (source: NCBI BLink).  protein_id AT3G06110.2p  transcript_id AT3G06110.2  protein_id AT3G06110.2p  transcript_id AT3G06110.2  
At3g06110	chr3:001843517	0.0	W/1843517-1843606,1843718-1843853,1843967-1844057,1844421-1844577	AT3G06110.1  CDS  gene_syn F28L1.5, F28L1_5, MAPK PHOSPHATASE 2, MKP2  gene MKP2  function Encodes a nuclear-localized MAP kinase phosphatase. Plants with reduced levels of MKP2 transcripts are hypersensitive to ozone and ozone-mediated activation of MPK3 and MPK6 is prolonged in these plants.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component nucleus|GO:0005634|17586809|IDA  go_process response to stress|GO:0006950|17586809|IMP  go_process protein kinase cascade|GO:0007243|17586809|IC  go_process response to ozone|GO:0010193|17586809|IMP  go_process negative regulation of MAP kinase activity|GO:0043407|17586809|IMP  go_function protein tyrosine/serine/threonine phosphatase activity|GO:0008138||ISS  go_function MAP kinase phosphatase activity|GO:0033549|17586809|IDA  product MKP2 (MAPK PHOSPHATASE 2); MAP kinase phosphatase/ protein tyrosine/serine/threonine phosphatase  note MAPK PHOSPHATASE 2 (MKP2); FUNCTIONS IN: MAP kinase phosphatase activity, protein tyrosine/serine/threonine phosphatase activity; INVOLVED IN: protein kinase cascade, response to ozone, response to stress, negative regulation of MAP kinase activity; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase (InterPro:IPR000387), Protein-tyrosine phosphatase, dual specificity (InterPro:IPR000340); BEST Arabidopsis thaliana protein match is: dual specificity protein phosphatase (DsPTP1) (TAIR:AT3G23610.2); Has 3228 Blast hits to 3220 proteins in 265 species: Archae - 16; Bacteria - 65; Metazoa - 1835; Fungi - 271; Plants - 138; Viruses - 165; Other Eukaryotes - 738 (source: NCBI BLink).  protein_id AT3G06110.1p  transcript_id AT3G06110.1  protein_id AT3G06110.1p  transcript_id AT3G06110.1  
At3g06120	chr3:001846531	0.0	W/1846531-1846626,1847150-1847569,1847924-1848016	AT3G06120.1  CDS  gene_syn F28L1.6, F28L1_6, MUTE  gene MUTE  function Encodes a basic helix-loop-helix (bHLH) protein that controls meristemoid differentiation during stomatal development. In the absence of MUTE, meristemoids abort after excessive asymmetric divisions and fail to differentiate stomata.  go_component nucleus|GO:0005634|17183267|IDA  go_process stomatal complex development|GO:0010374|17183265|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product MUTE (MUTE); DNA binding / transcription factor  note MUTE (MUTE); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: stomatal complex development; LOCATED IN: nucleus; EXPRESSED IN: meristemoid, guard cell, guard mother cell; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: FMA (FAMA); DNA binding / transcription activator/ transcription factor (TAIR:AT3G24140.1); Has 674 Blast hits to 668 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 674; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G06120.1p  transcript_id AT3G06120.1  protein_id AT3G06120.1p  transcript_id AT3G06120.1  
At3g06125	chr3:001848848	0.0	W/1848848-1849332	AT3G06125.2  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G06125.2  
At3g06125	chr3:001848876	0.0	W/1848876-1849332	AT3G06125.3  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G06125.3  
At3g06125	chr3:001848883	0.0	W/1848883-1850596	AT3G06125.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G06125.1  
At3g06130	chr3:001854644	0.0	C/1854644-1854673,1854487-1854562,1853048-1854363	AT3G06130.1  CDS  go_component cell wall|GO:0005618|16287169|IDA  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT5G19090.3); Has 109755 Blast hits to 35195 proteins in 1695 species: Archae - 151; Bacteria - 27140; Metazoa - 47181; Fungi - 6595; Plants - 9363; Viruses - 1377; Other Eukaryotes - 17948 (source: NCBI BLink).  protein_id AT3G06130.1p  transcript_id AT3G06130.1  protein_id AT3G06130.1p  transcript_id AT3G06130.1  
At3g06140	chr3:001858308	0.0	C/1858308-1858777,1857385-1857874,1856993-1857112	AT3G06140.1  CDS  gene_syn F28L1.8, F28L1_8  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G19080.1); Has 6615 Blast hits to 4433 proteins in 311 species: Archae - 2; Bacteria - 83; Metazoa - 2278; Fungi - 466; Plants - 2616; Viruses - 263; Other Eukaryotes - 907 (source: NCBI BLink).  protein_id AT3G06140.1p  transcript_id AT3G06140.1  protein_id AT3G06140.1p  transcript_id AT3G06140.1  
At3g06142	chr3:001859377	0.0	W/1859377-1859526	AT3G06142.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G06142.1p  transcript_id AT3G06142.1  protein_id AT3G06142.1p  transcript_id AT3G06142.1  
At3g06145	chr3:001860118	0.0	C/1860118-1860618	AT3G06145.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 5 Blast hits to 5 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G06145.1p  transcript_id AT3G06145.1  protein_id AT3G06145.1p  transcript_id AT3G06145.1  
At3g06150	chr3:001861971	0.0	C/1861971-1863755	AT3G06150.1  CDS  gene_syn F28L1.9, F28L1_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19060.1); Has 18 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G06150.1p  transcript_id AT3G06150.1  protein_id AT3G06150.1p  transcript_id AT3G06150.1  
At3g06160	chr3:001864326	0.0	W/1864326-1864356,1865665-1865747,1866137-1866659,1866738-1866832,1866932-1867192	AT3G06160.1  CDS  gene_syn F28L1.10, F28L1_10  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcriptional factor B3 family protein  note transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT3G06220.1); Has 203 Blast hits to 176 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 183; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT3G06160.1p  transcript_id AT3G06160.1  protein_id AT3G06160.1p  transcript_id AT3G06160.1  
At3g06170	chr3:001867520	0.0	W/1867520-1867697,1868145-1868381,1868681-1868792,1868916-1869328,1869449-1869738	AT3G06170.1  CDS  gene_syn F28L1.11, F28L1_11  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  product TMS membrane family protein / tumour differentially expressed (TDE) family protein  note TMS membrane family protein / tumour differentially expressed (TDE) family protein; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TMS membrane protein/tumour differentially expressed protein (InterPro:IPR005016); BEST Arabidopsis thaliana protein match is: TMS membrane family protein / tumour differentially expressed (TDE) family protein (TAIR:AT1G16180.1); Has 607 Blast hits to 602 proteins in 137 species: Archae - 0; Bacteria - 2; Metazoa - 388; Fungi - 87; Plants - 79; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT3G06170.1p  transcript_id AT3G06170.1  protein_id AT3G06170.1p  transcript_id AT3G06170.1  
At3g06180	chr3:001871705	0.0	W/1871705-1872384,1873509-1873554	AT3G06180.1  CDS  gene_syn F28L1.12, F28L1_12  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_component chloroplast|GO:0009507||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  product structural constituent of ribosome  note structural constituent of ribosome; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e (InterPro:IPR008195); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G19020.1); Has 48 Blast hits to 48 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 37; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G06180.1p  transcript_id AT3G06180.1  protein_id AT3G06180.1p  transcript_id AT3G06180.1  
At3g06190	chr3:001876163	0.0	C/1876163-1876575,1875653-1876001,1874856-1875132,1874577-1874758	AT3G06190.1  CDS  gene_syn ATBPM2, BPM2, BTB-POZ AND MATH DOMAIN 2, F28L1.13, F28L1_13  gene BPM2  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product BPM2 (BTB-POZ AND MATH DOMAIN 2); protein binding  note BTB-POZ AND MATH DOMAIN 2 (BPM2); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: ATBPM1 (BTB-POZ and MATH domain 1); protein binding (TAIR:AT5G19000.1); Has 4983 Blast hits to 4873 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 3891; Fungi - 33; Plants - 881; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink).  protein_id AT3G06190.1p  transcript_id AT3G06190.1  protein_id AT3G06190.1p  transcript_id AT3G06190.1  
At3g06190	chr3:001876163	0.0	C/1876163-1876575,1875691-1876001,1875560-1875576,1874577-1874723	AT3G06190.2  CDS  gene_syn ATBPM2, BPM2, BTB-POZ AND MATH DOMAIN 2, F28L1.13, F28L1_13  gene BPM2  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product BPM2 (BTB-POZ AND MATH DOMAIN 2); protein binding  note BTB-POZ AND MATH DOMAIN 2 (BPM2); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: ATBPM1 (BTB-POZ and MATH domain 1); protein binding (TAIR:AT5G19000.1); Has 1457 Blast hits to 1414 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 754; Fungi - 0; Plants - 680; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT3G06190.2p  transcript_id AT3G06190.2  protein_id AT3G06190.2p  transcript_id AT3G06190.2  
At3g06200	chr3:001877678	0.0	W/1877678-1878526	AT3G06200.1  CDS  gene_syn F28L1.14, F28L1_14  go_component chloroplast|GO:0009507||IEA  go_process purine nucleotide metabolic process|GO:0006163||IEA  go_function guanylate kinase activity|GO:0004385||IEA  go_function guanylate kinase activity|GO:0004385||ISS  product guanylate kinase, putative  note guanylate kinase, putative; FUNCTIONS IN: guanylate kinase activity; INVOLVED IN: purine nucleotide metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Guanylate kinase (InterPro:IPR008144), Guanylate kinase/L-type calcium channel region (InterPro:IPR008145), Guanylate kinase, sub-group (InterPro:IPR017665); BEST Arabidopsis thaliana protein match is: GK-1 (GUANYLATE KINASE 1); guanylate kinase (TAIR:AT2G41880.1); Has 6424 Blast hits to 6424 proteins in 1533 species: Archae - 0; Bacteria - 2941; Metazoa - 1052; Fungi - 96; Plants - 63; Viruses - 7; Other Eukaryotes - 2265 (source: NCBI BLink).  protein_id AT3G06200.1p  transcript_id AT3G06200.1  protein_id AT3G06200.1p  transcript_id AT3G06200.1  
At3g06210	chr3:001880093	0.0	W/1880093-1880140,1880579-1881042,1881123-1881779,1881888-1882809,1882886-1883317	AT3G06210.1  CDS  gene_syn F28L1.15, F28L1_15  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT5G18980.1); Has 306 Blast hits to 218 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 306; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G06210.1p  transcript_id AT3G06210.1  protein_id AT3G06210.1p  transcript_id AT3G06210.1  
At3g06220	chr3:001884652	0.0	C/1884652-1884720,1883672-1884127	AT3G06220.1  CDS  gene_syn F28L1.16, F28L1_16  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product DNA binding / transcription factor  note DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT3G06160.1); Has 171 Blast hits to 157 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G06220.1p  transcript_id AT3G06220.1  protein_id AT3G06220.1p  transcript_id AT3G06220.1  
At3g06230	chr3:001885496	0.0	W/1885496-1886377	AT3G06230.1  CDS  gene_syn ATMKK8, F28L1.17, F28L1_17  gene ATMKK8  function member of MAP Kinase Kinase  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function MAP kinase kinase activity|GO:0004708|11875555|TAS  go_function kinase activity|GO:0016301||ISS  product ATMKK8; MAP kinase kinase/ kinase  note ATMKK8; FUNCTIONS IN: MAP kinase kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: MKK9 (MAP KINASE KINASE 9); MAP kinase kinase/ kinase/ protein kinase activator (TAIR:AT1G73500.1); Has 86526 Blast hits to 85741 proteins in 3076 species: Archae - 43; Bacteria - 7431; Metazoa - 37933; Fungi - 7536; Plants - 17050; Viruses - 429; Other Eukaryotes - 16104 (source: NCBI BLink).  protein_id AT3G06230.1p  transcript_id AT3G06230.1  protein_id AT3G06230.1p  transcript_id AT3G06230.1  
At3g06240	chr3:001887336	0.0	W/1887336-1888619	AT3G06240.1  CDS  gene_syn F28L1.18, F28L1_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G23880.1); Has 1173 Blast hits to 1161 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1171; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G06240.1p  transcript_id AT3G06240.1  protein_id AT3G06240.1p  transcript_id AT3G06240.1  
At3g06250	chr3:001889771	0.0	C/1889771-1892065	AT3G06250.1  CDS  gene_syn F28L1.19, F28L1_19, FAR1-related sequence 7, FRS7  gene FRS7  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process response to red or far red light|GO:0009639||ISS  product FRS7 (FAR1-related sequence 7); zinc ion binding  note FAR1-related sequence 7 (FRS7); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FRS12 (FAR1-related sequence 12); zinc ion binding (TAIR:AT5G18960.1); Has 1124 Blast hits to 688 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 16; Plants - 1102; Viruses - 2; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G06250.1p  transcript_id AT3G06250.1  protein_id AT3G06250.1p  transcript_id AT3G06250.1  
At3g06260	chr3:001893804	0.0	C/1893804-1894859	AT3G06260.1  CDS  gene_syn F28L1.20, F28L1_20, GATL4, Galacturonosyltransferase-like 4  gene GATL4  function Encodes a protein with putative galacturonosyltransferase activity.  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS  product GATL4 (Galacturonosyltransferase-like 4); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note Galacturonosyltransferase-like 4 (GATL4); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: GATL3 (Galacturonosyltransferase-like 3); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT1G13250.1); Has 1664 Blast hits to 1656 proteins in 333 species: Archae - 0; Bacteria - 768; Metazoa - 308; Fungi - 29; Plants - 435; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).  protein_id AT3G06260.1p  transcript_id AT3G06260.1  protein_id AT3G06260.1p  transcript_id AT3G06260.1  
At3g06270	chr3:001896763	0.0	W/1896763-1897671,1897750-1897887	AT3G06270.1  CDS  gene_syn F28L1.21, F28L1_21  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: ATP binding / cAMP-dependent protein kinase regulator/ catalytic/ protein kinase/ protein serine/threonine phosphatase (TAIR:AT2G20050.1); Has 3686 Blast hits to 3670 proteins in 257 species: Archae - 2; Bacteria - 83; Metazoa - 1132; Fungi - 383; Plants - 1219; Viruses - 4; Other Eukaryotes - 863 (source: NCBI BLink).  protein_id AT3G06270.1p  transcript_id AT3G06270.1  protein_id AT3G06270.1p  transcript_id AT3G06270.1  
At3g06280	chr3:001898155	0.0	C/1898155-1898751	AT3G06280.1  CDS  gene_syn F28L1.22, F28L1_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, hypocotyl, seed, leaf; EXPRESSED DURING: LP.04 four leaves visible, F mature embryo stage; CONTAINS InterPro DOMAIN/s: F-box associated type 3 (InterPro:IPR013187); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G47730.1); Has 223 Blast hits to 219 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 223; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G06280.1p  transcript_id AT3G06280.1  protein_id AT3G06280.1p  transcript_id AT3G06280.1  
At3g06290	chr3:001907209	0.0	C/1907209-1907297,1906779-1906913,1906534-1906626,1906270-1906362,1905958-1906050,1905491-1905655,1905068-1905190,1904610-1904822,1904028-1904246,1903691-1903938,1903399-1903499,1903075-1903290,1902747-1902974,1902579-1902670,1902409-1902502,1902216-1902308,1901232-1902112,1901042-1901159,1899123-1900922	AT3G06290.1  CDS  gene_syn F28L1.23, F28L1_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro:IPR005062); BEST Arabidopsis thaliana protein match is: SAC3/GANP family protein (TAIR:AT3G54380.1); Has 1341 Blast hits to 841 proteins in 168 species: Archae - 0; Bacteria - 24; Metazoa - 448; Fungi - 228; Plants - 85; Viruses - 0; Other Eukaryotes - 556 (source: NCBI BLink).  protein_id AT3G06290.1p  transcript_id AT3G06290.1  protein_id AT3G06290.1p  transcript_id AT3G06290.1  
At3g06300	chr3:001907744	0.0	W/1907744-1907880,1907976-1908033,1908141-1908245,1908705-1908762,1908912-1909087,1909220-1909289,1909380-1909675	AT3G06300.1  CDS  gene_syn A. THALIANA P4H ISOFORM 2, AT-P4H-2, F24P17.24, F24P17_24, PROLYL 4-HYDROXYLASE  gene AT-P4H-2  function Encodes a prolyl-4 hydroxylase that can hydroxylate poly(L-proline)and other proline rich peptides, including those with sequences corresponding to those in arabinogalactan proteins and extensins.  go_component endomembrane system|GO:0012505||IEA  go_process peptidyl-proline hydroxylation to 4-hydroxy-L-proline|GO:0018401|15528200|IDA  go_process peptidyl-proline hydroxylation to 4-hydroxy-L-proline|GO:0018401||ISS  go_function procollagen-proline 4-dioxygenase activity|GO:0004656|15528200|IDA  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product AT-P4H-2 (A. THALIANA P4H ISOFORM 2); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors / procollagen-proline 4-dioxygenase  note A. THALIANA P4H ISOFORM 2 (AT-P4H-2); FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, procollagen-proline 4-dioxygenase activity; INVOLVED IN: peptidyl-proline hydroxylation to 4-hydroxy-L-proline; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), 2OG-Fe(II) oxygenase (InterPro:IPR005123), Metridin-like ShK toxin (InterPro:IPR003582); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT5G18900.1); Has 1926 Blast hits to 1915 proteins in 226 species: Archae - 0; Bacteria - 197; Metazoa - 988; Fungi - 60; Plants - 221; Viruses - 14; Other Eukaryotes - 446 (source: NCBI BLink).  protein_id AT3G06300.1p  transcript_id AT3G06300.1  protein_id AT3G06300.1p  transcript_id AT3G06300.1  
At3g06310	chr3:001913926	0.0	C/1913926-1914174	AT3G06310.2  CDS  gene_syn F24P17.23, F24P17_23  go_component cellular_component|GO:0005575||ND  go_process mitochondrial electron transport, NADH to ubiquinone|GO:0006120||ISS  go_function NADH dehydrogenase (ubiquinone) activity|GO:0008137||ISS  product NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein  note NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein; FUNCTIONS IN: NADH dehydrogenase (ubiquinone) activity; INVOLVED IN: mitochondrial electron transport, NADH to ubiquinone; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein (TAIR:AT5G18800.2); Has 145 Blast hits to 145 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 14; Plants - 30; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G06310.2p  transcript_id AT3G06310.2  protein_id AT3G06310.2p  transcript_id AT3G06310.2  
At3g06310	chr3:001913981	0.0	C/1913981-1914174,1913260-1913392	AT3G06310.1  CDS  gene_syn F24P17.23, F24P17_23  go_component cellular_component|GO:0005575||ND  go_process mitochondrial electron transport, NADH to ubiquinone|GO:0006120||ISS  go_function NADH dehydrogenase (ubiquinone) activity|GO:0008137||ISS  product NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein  note NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein; FUNCTIONS IN: NADH dehydrogenase (ubiquinone) activity; INVOLVED IN: mitochondrial electron transport, NADH to ubiquinone; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625); BEST Arabidopsis thaliana protein match is: NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein (TAIR:AT5G18800.2); Has 234 Blast hits to 234 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 72; Plants - 35; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G06310.1p  transcript_id AT3G06310.1  protein_id AT3G06310.1p  transcript_id AT3G06310.1  
At3g06320	chr3:001914940	0.0	W/1914940-1915116	AT3G06320.1  CDS  gene_syn F24P17.22, F24P17_22  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L33 family protein  note ribosomal protein L33 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; CONTAINS InterPro DOMAIN/s: Ribosomal protein L33 (InterPro:IPR001705); BEST Arabidopsis thaliana protein match is: ribosomal protein L33 family protein (TAIR:AT5G18790.1); Has 1784 Blast hits to 1784 proteins in 750 species: Archae - 0; Bacteria - 1568; Metazoa - 22; Fungi - 13; Plants - 30; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).  protein_id AT3G06320.1p  transcript_id AT3G06320.1  protein_id AT3G06320.1p  transcript_id AT3G06320.1  
At3g06330	chr3:001917334	0.0	W/1917334-1917423,1918020-1918412,1918488-1918593,1918679-1918991,1919066-1919138,1919214-1919304,1919406-1919485,1919575-1919709	AT3G06330.1  CDS  gene_syn F24P17.21, F24P17_21  go_function ubiquitin-protein ligase activity|GO:0004842|15644464|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G18760.1); Has 1171 Blast hits to 1014 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 537; Fungi - 74; Plants - 331; Viruses - 4; Other Eukaryotes - 225 (source: NCBI BLink).  protein_id AT3G06330.1p  transcript_id AT3G06330.1  protein_id AT3G06330.1p  transcript_id AT3G06330.1  
At3g06330	chr3:001917334	0.0	W/1917334-1917423,1918020-1918412,1918488-1918593,1918679-1918991,1919066-1919138,1919214-1919330	AT3G06330.3  CDS  gene_syn F24P17.21, F24P17_21  go_function ubiquitin-protein ligase activity|GO:0004842|15644464|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G18760.1); Has 1171 Blast hits to 1014 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 537; Fungi - 74; Plants - 331; Viruses - 4; Other Eukaryotes - 225 (source: NCBI BLink).  protein_id AT3G06330.3p  transcript_id AT3G06330.3  protein_id AT3G06330.3p  transcript_id AT3G06330.3  
At3g06330	chr3:001918512	0.0	W/1918512-1918593,1918679-1918991,1919066-1919138,1919214-1919304,1919406-1919485,1919575-1919709	AT3G06330.2  CDS  gene_syn F24P17.21, F24P17_21  go_function ubiquitin-protein ligase activity|GO:0004842|15644464|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G18760.1); Has 978 Blast hits to 978 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 514; Fungi - 70; Plants - 331; Viruses - 4; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT3G06330.2p  transcript_id AT3G06330.2  protein_id AT3G06330.2p  transcript_id AT3G06330.2  
At3g06335	chr3:001920033	0.0	C/1920033-1920104	AT3G06335.1  tRNA  gene_syn 60245.TRNA-PRO-1, 60732.TRNA-PRO-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT3G06335.1  
At3g06340	chr3:001920607	0.0	C/1920607-1922628	AT3G06340.1  CDS  gene_syn F24P17.19, F24P17_19  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT5G18750.1); Has 24187 Blast hits to 14794 proteins in 1885 species: Archae - 90; Bacteria - 12845; Metazoa - 4177; Fungi - 1376; Plants - 1002; Viruses - 32; Other Eukaryotes - 4665 (source: NCBI BLink).  protein_id AT3G06340.1p  transcript_id AT3G06340.1  protein_id AT3G06340.1p  transcript_id AT3G06340.1  
At3g06340	chr3:001920607	0.0	C/1920607-1922628	AT3G06340.2  CDS  gene_syn F24P17.19, F24P17_19  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT5G18750.1); Has 24187 Blast hits to 14794 proteins in 1885 species: Archae - 90; Bacteria - 12845; Metazoa - 4177; Fungi - 1376; Plants - 1002; Viruses - 32; Other Eukaryotes - 4665 (source: NCBI BLink).  protein_id AT3G06340.2p  transcript_id AT3G06340.2  protein_id AT3G06340.2p  transcript_id AT3G06340.2  
At3g06350	chr3:001927480	0.0	C/1927480-1927701,1926982-1927223,1926731-1926836,1926428-1926646,1925985-1926331,1925784-1925847,1925564-1925672,1925329-1925478,1925004-1925152,1924668-1924830,1924536-1924576	AT3G06350.1  CDS  gene_syn EMB3004, EMBRYO DEFECTIVE 3004, F24P17.18, F24P17_18, MATERNAL EFFECT EMBRYO ARREST 32, MEE32  gene MEE32  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_function catalytic activity|GO:0003824||IEA  go_function 3-dehydroquinate dehydratase activity|GO:0003855||IEA  go_function shikimate 5-dehydrogenase activity|GO:0004764||IEA  go_function binding|GO:0005488||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product MEE32 (MATERNAL EFFECT EMBRYO ARREST 32); 3-dehydroquinate dehydratase/ NADP or NADPH binding / binding / catalytic/ shikimate 5-dehydrogenase  note MATERNAL EFFECT EMBRYO ARREST 32 (MEE32); FUNCTIONS IN: NADP or NADPH binding, 3-dehydroquinate dehydratase activity, shikimate 5-dehydrogenase activity, binding, catalytic activity; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase (InterPro:IPR006151), Aldolase-type TIM barrel (InterPro:IPR013785), 3-dehydroquinate dehydratase, active site (InterPro:IPR018508), Quinate/shikimate 5-dehydrogenase (InterPro:IPR011342), NAD(P)-binding (InterPro:IPR016040), Dehydroquinase class I (InterPro:IPR001381), Shikimate dehydrogenase substrate binding, N-terminal (InterPro:IPR013708); Has 9368 Blast hits to 9366 proteins in 1469 species: Archae - 354; Bacteria - 5836; Metazoa - 0; Fungi - 292; Plants - 60; Viruses - 0; Other Eukaryotes - 2826 (source: NCBI BLink).  protein_id AT3G06350.1p  transcript_id AT3G06350.1  protein_id AT3G06350.1p  transcript_id AT3G06350.1  
At3g06360	chr3:001928976	0.0	W/1928976-1929353	AT3G06360.1  CDS  gene_syn AGP27, Arabinogalactan protein 27, AtAGP27, F24P17.17, F24P17_17  gene AGP27  function Encodes an arabinogalactan-protein (AGP27).  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  product AGP27  note AGP27; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: inflorescence meristem, hypocotyl; Has 122 Blast hits to 93 proteins in 29 species: Archae - 0; Bacteria - 2; Metazoa - 18; Fungi - 9; Plants - 36; Viruses - 8; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT3G06360.1p  transcript_id AT3G06360.1  protein_id AT3G06360.1p  transcript_id AT3G06360.1  
At3g06370	chr3:001933342	0.0	C/1933342-1933515,1933142-1933260,1932972-1933069,1932819-1932878,1932689-1932735,1932406-1932600,1932293-1932339,1932134-1932200,1931954-1932054,1931759-1931860,1931483-1931684,1931301-1931384,1931004-1931200,1930899-1930917	AT3G06370.1  CDS  gene_syn ATNHX4, F24P17.16, F24P17_16, NHX4, SODIUM HYDROGEN EXCHANGER 4  gene NHX4  function member of Sodium proton exchanger family  go_component plasma membrane|GO:0005886|17151019|IDA  go_component vacuolar membrane|GO:0005774|19306843|IDA  go_process sodium ion transport|GO:0006814||ISS  go_process response to salt stress|GO:0009651|19306843|IMP  go_function sodium ion transmembrane transporter activity|GO:0015081||ISS  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product NHX4 (SODIUM HYDROGEN EXCHANGER 4); sodium ion transmembrane transporter/ sodium:hydrogen antiporter  note SODIUM HYDROGEN EXCHANGER 4 (NHX4); FUNCTIONS IN: sodium:hydrogen antiporter activity, sodium ion transmembrane transporter activity; INVOLVED IN: response to salt stress, sodium ion transport; LOCATED IN: vacuolar membrane, plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger, conserved region (InterPro:IPR018422), Cation/H+ exchanger (InterPro:IPR006153), Na+/H+ exchanger, isoforms 1-4, conserved region (InterPro:IPR018407), Na+/H+ exchanger, conserved region (InterPro:IPR018406); BEST Arabidopsis thaliana protein match is: NHX2 (SODIUM HYDROGEN EXCHANGER 2); sodium ion transmembrane transporter/ sodium:hydrogen antiporter (TAIR:AT3G05030.1); Has 3749 Blast hits to 3740 proteins in 1000 species: Archae - 42; Bacteria - 2273; Metazoa - 711; Fungi - 86; Plants - 280; Viruses - 0; Other Eukaryotes - 357 (source: NCBI BLink).  protein_id AT3G06370.1p  transcript_id AT3G06370.1  protein_id AT3G06370.1p  transcript_id AT3G06370.1  
At3g06380	chr3:001936384	0.0	W/1936384-1936674,1936910-1936997,1937101-1937230,1937304-1937471,1937563-1938028	AT3G06380.1  CDS  gene_syn ATTLP9, F24P17.15, F24P17_15, TLP9, TUBBY-LIKE PROTEIN 9  gene ATTLP9  function Member of TLP family  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function protein binding|GO:0005515|16792696|IPI  go_function phosphoric diester hydrolase activity|GO:0008081||ISS  product ATTLP9 (TUBBY-LIKE PROTEIN 9); phosphoric diester hydrolase/ protein binding / transcription factor  note TUBBY-LIKE PROTEIN 9 (ATTLP9); FUNCTIONS IN: protein binding, transcription factor activity, phosphoric diester hydrolase activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: AtTLP11 (TUBBY LIKE PROTEIN 11); phosphoric diester hydrolase/ transcription factor (TAIR:AT5G18680.1); Has 674 Blast hits to 674 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 292; Fungi - 2; Plants - 301; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT3G06380.1p  transcript_id AT3G06380.1  protein_id AT3G06380.1p  transcript_id AT3G06380.1  
At3g06390	chr3:001939448	0.0	C/1939448-1939707,1939219-1939345,1938913-1939125	AT3G06390.1  CDS  gene_syn F24P17.14, F24P17_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane family protein  note integral membrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT4G15610.1); Has 278 Blast hits to 278 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 278; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G06390.1p  transcript_id AT3G06390.1  protein_id AT3G06390.1p  transcript_id AT3G06390.1  
At3g06400	chr3:001941066	0.0	W/1941066-1941263,1941471-1941602,1941698-1941804,1941916-1942028,1942232-1942329,1942420-1942599,1942682-1942903,1943100-1943234,1943317-1943599,1943677-1943750,1943861-1944081,1944158-1944245,1944324-1944417,1944494-1944682,1944770-1944804,1944914-1944990,1945089-1945178,1945277-1945346,1945453-1945507,1945601-1945656,1945743-1945908,1946027-1946205,1946301-1946516,1946611-1946700	AT3G06400.1  CDS  gene_syn CHR11, CHROMATIN-REMODELING PROTEIN 11, F24P17.13, F24P17_13  gene CHR11  function Encodes a SWI2/SNF2 chromatin remodeling protein belonging to the ISWI family. Involved in nuclear proliferation during megagametogenesis and cell expansion in the sporophyte. Constitutively expressed. RNAi induced loss of function in megagametogenesis results in female sterility.35S:RNAi plants have reduced stature.  go_component nucleus|GO:0005634||IEA  go_component chromatin remodeling complex|GO:0016585||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides|GO:0016818||IEA  go_function nucleosome binding|GO:0031491||IEA  go_process embryo sac development|GO:0009553|16286646|IMP  go_process cell growth|GO:0016049|16286646|IMP  go_function DNA-dependent ATPase activity|GO:0008094||ISS  product CHR11 (CHROMATIN-REMODELING PROTEIN 11); ATP binding / DNA binding / DNA-dependent ATPase/ helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding / nucleosome binding  note CHROMATIN-REMODELING PROTEIN 11 (CHR11); FUNCTIONS IN: in 7 functions; INVOLVED IN: embryo sac development, cell growth; LOCATED IN: nucleus, chromatin remodeling complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, nucleosome remodelling ISWI, HAND domain (InterPro:IPR015194), SANT, eukarya (InterPro:IPR017884), SNF2-related (InterPro:IPR000330), SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SLIDE (InterPro:IPR015195), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: CHR17 (CHROMATIN REMODELING FACTOR17); ATP binding / DNA binding / DNA-dependent ATPase/ helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding / nucleosome binding (TAIR:AT5G18620.2); Has 22071 Blast hits to 16033 proteins in 1346 species: Archae - 93; Bacteria - 3365; Metazoa - 7288; Fungi - 3686; Plants - 1045; Viruses - 443; Other Eukaryotes - 6151 (source: NCBI BLink).  protein_id AT3G06400.1p  transcript_id AT3G06400.1  protein_id AT3G06400.1p  transcript_id AT3G06400.1  
At3g06410	chr3:001949438	0.0	C/1949438-1949528,1949188-1949351,1948939-1949004,1948682-1948807,1948278-1948592,1947892-1948191,1947471-1947797	AT3G06410.1  CDS  gene_syn F24P17.12, F24P17_12  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product nucleic acid binding / zinc ion binding  note nucleic acid binding / zinc ion binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: nucleic acid binding / zinc ion binding (TAIR:AT5G18550.1); Has 2467 Blast hits to 1214 proteins in 156 species: Archae - 0; Bacteria - 52; Metazoa - 732; Fungi - 197; Plants - 566; Viruses - 7; Other Eukaryotes - 913 (source: NCBI BLink).  protein_id AT3G06410.1p  transcript_id AT3G06410.1  protein_id AT3G06410.1p  transcript_id AT3G06410.1  
At3g06420	chr3:001956232	0.0	C/1956232-1956274,1956079-1956134,1955622-1955674,1955399-1955517,1955219-1955307	AT3G06420.1  CDS  gene_syn ATG8H, F24P17.11, F24P17_11, autophagy 8h  gene ATG8H  go_process autophagy|GO:0006914||ISS  go_function microtubule binding|GO:0008017||ISS  product ATG8H (autophagy 8h); microtubule binding  note autophagy 8h (ATG8H); FUNCTIONS IN: microtubule binding; INVOLVED IN: autophagy; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: APG8H (AUTOPHAGY 8H); APG8 activating enzyme/ APG8-specific protease/ Atg8 ligase/ microtubule binding (TAIR:AT3G15580.1); Has 1119 Blast hits to 1117 proteins in 200 species: Archae - 0; Bacteria - 0; Metazoa - 577; Fungi - 124; Plants - 171; Viruses - 3; Other Eukaryotes - 244 (source: NCBI BLink).  protein_id AT3G06420.1p  transcript_id AT3G06420.1  protein_id AT3G06420.1p  transcript_id AT3G06420.1  
At3g06430	chr3:001957914	0.0	C/1957914-1958240,1956658-1957791	AT3G06430.1  CDS  gene_syn EMB2750, F24P17.10, F24P17_10, embryo defective 2750  gene EMB2750  go_component chloroplast|GO:0009507||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process pollen tube development|GO:0048868|19237690|IMP  product EMB2750 (embryo defective 2750)  note embryo defective 2750 (EMB2750); INVOLVED IN: embryonic development ending in seed dormancy, pollen tube development; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53170.1); Has 13889 Blast hits to 5167 proteins in 165 species: Archae - 3; Bacteria - 14; Metazoa - 269; Fungi - 227; Plants - 12750; Viruses - 0; Other Eukaryotes - 626 (source: NCBI BLink).  protein_id AT3G06430.1p  transcript_id AT3G06430.1  protein_id AT3G06430.1p  transcript_id AT3G06430.1  
At3g06433	chr3:001958901	0.0	W/1958901-1962344	AT3G06433.1  pseudogenic_transcript  pseudo  gene_syn F24P17.9  function pseudogene of nodulin MtN3 family protein  note pseudogene, expressed protein  
At3g06435	chr3:001970102	0.0	C/1970102-1970704	AT3G06435.1  CDS  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Expressed protein  note Expressed protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; Has 5 Blast hits to 5 proteins in 4 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G06435.1p  transcript_id AT3G06435.1  protein_id AT3G06435.1p  transcript_id AT3G06435.1  
At3g06437	chr3:001970997	0.0	C/1970997-1972455	AT3G06437.1  pseudogenic_transcript  pseudo  gene_syn F24P17.8  note pseudogene, hypothetical protein  
At3g06440	chr3:001974522	0.0	C/1974522-1975272,1974236-1974444,1973886-1974164,1973679-1973807,1973398-1973574,1973183-1973317	AT3G06440.2  CDS  gene_syn F24P17.7, F24P17_7  go_component membrane|GO:0016020||IEA  go_process protein amino acid glycosylation|GO:0006486||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product galactosyltransferase family protein  note galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galectin, carbohydrate recognition domain (InterPro:IPR001079), Glycosyl transferase, family 31 (InterPro:IPR002659), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: GALT1 (GALACTOSYLTRANSFERASE1); UDP-galactose:N-glycan beta-1,3-galactosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT1G26810.1); Has 1697 Blast hits to 1689 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 1384; Fungi - 5; Plants - 285; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT3G06440.2p  transcript_id AT3G06440.2  protein_id AT3G06440.2p  transcript_id AT3G06440.2  
At3g06440	chr3:001974522	0.0	C/1974522-1975272,1974236-1974444,1973886-1974164,1973679-1973807,1973398-1973574,1973210-1973317,1972913-1973119	AT3G06440.1  CDS  gene_syn F24P17.7, F24P17_7  go_component membrane|GO:0016020||IEA  go_process protein amino acid glycosylation|GO:0006486||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product galactosyltransferase family protein  note galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galectin, carbohydrate recognition domain (InterPro:IPR001079), Glycosyl transferase, family 31 (InterPro:IPR002659), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320); BEST Arabidopsis thaliana protein match is: GALT1 (GALACTOSYLTRANSFERASE1); UDP-galactose:N-glycan beta-1,3-galactosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT1G26810.1); Has 1799 Blast hits to 1791 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 1426; Fungi - 5; Plants - 334; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT3G06440.1p  transcript_id AT3G06440.1  protein_id AT3G06440.1p  transcript_id AT3G06440.1  
At3g06450	chr3:001979194	0.0	C/1979194-1979303,1979039-1979121,1978747-1978939,1978491-1978629,1978231-1978396,1977948-1978114,1977684-1977857,1977501-1977596,1977283-1977417,1976896-1977203,1976533-1976803,1976085-1976441	AT3G06450.1  CDS  gene_syn F24P17.6, F24P17_6  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process anion transport|GO:0006820||IEA  go_function anion exchanger activity|GO:0015380||ISS  product anion exchange family protein  note anion exchange family protein; FUNCTIONS IN: anion exchanger activity; INVOLVED IN: anion transport; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, eukaryotic (InterPro:IPR003020), Bicarbonate transporter, C-terminal (InterPro:IPR011531); BEST Arabidopsis thaliana protein match is: BOR1 (REQUIRES HIGH BORON 1); anion exchanger/ boron transporter (TAIR:AT2G47160.1); Has 2090 Blast hits to 1065 proteins in 139 species: Archae - 0; Bacteria - 2; Metazoa - 1742; Fungi - 195; Plants - 98; Viruses - 2; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT3G06450.1p  transcript_id AT3G06450.1  protein_id AT3G06450.1p  transcript_id AT3G06450.1  
At3g06450	chr3:001979194	0.0	C/1979194-1979303,1979039-1979121,1978747-1978939,1978491-1978629,1978231-1978396,1977948-1978114,1977684-1977857,1977501-1977596,1977283-1977417,1976896-1977203,1976533-1976803,1976085-1976441	AT3G06450.2  CDS  gene_syn F24P17.6, F24P17_6  go_component plasma membrane|GO:0005886|17317660|IDA  go_process anion transport|GO:0006820||IEA  go_function anion exchanger activity|GO:0015380||ISS  product anion exchange family protein  note anion exchange family protein; FUNCTIONS IN: anion exchanger activity; INVOLVED IN: anion transport; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, eukaryotic (InterPro:IPR003020), Bicarbonate transporter, C-terminal (InterPro:IPR011531); BEST Arabidopsis thaliana protein match is: BOR1 (REQUIRES HIGH BORON 1); anion exchanger/ boron transporter (TAIR:AT2G47160.1); Has 2090 Blast hits to 1065 proteins in 139 species: Archae - 0; Bacteria - 2; Metazoa - 1742; Fungi - 195; Plants - 98; Viruses - 2; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT3G06450.2p  transcript_id AT3G06450.2  protein_id AT3G06450.2p  transcript_id AT3G06450.2  
At3g06455	chr3:001980885	0.0	W/1980885-1981203,1981274-1982055	AT3G06455.1  CDS  gene_syn F24P17.5  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product splicing factor-related  note splicing factor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: ubiquitin family protein (TAIR:AT4G01000.1); Has 5886 Blast hits to 2871 proteins in 525 species: Archae - 0; Bacteria - 0; Metazoa - 2661; Fungi - 609; Plants - 1364; Viruses - 154; Other Eukaryotes - 1098 (source: NCBI BLink).  protein_id AT3G06455.1p  transcript_id AT3G06455.1  protein_id AT3G06455.1p  transcript_id AT3G06455.1  
At3g06460	chr3:001982681	0.0	W/1982681-1983577	AT3G06460.1  CDS  gene_syn F24P17.4, F24P17_4  go_component integral to membrane|GO:0016021||IEA  go_component integral to membrane|GO:0016021||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product GNS1/SUR4 membrane family protein  note GNS1/SUR4 membrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: GNS1/SUR4 membrane protein (InterPro:IPR002076); BEST Arabidopsis thaliana protein match is: GNS1/SUR4 membrane family protein (TAIR:AT3G06470.1); Has 1729 Blast hits to 1726 proteins in 184 species: Archae - 0; Bacteria - 0; Metazoa - 1179; Fungi - 254; Plants - 58; Viruses - 13; Other Eukaryotes - 225 (source: NCBI BLink).  protein_id AT3G06460.1p  transcript_id AT3G06460.1  protein_id AT3G06460.1p  transcript_id AT3G06460.1  
At3g06470	chr3:001984206	0.0	W/1984206-1985042	AT3G06470.1  CDS  gene_syn F24P17.3, F24P17_3  go_component integral to membrane|GO:0016021||IEA  go_component integral to membrane|GO:0016021||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product GNS1/SUR4 membrane family protein  note GNS1/SUR4 membrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GNS1/SUR4 membrane protein (InterPro:IPR002076); BEST Arabidopsis thaliana protein match is: GNS1/SUR4 membrane family protein (TAIR:AT3G06460.1); Has 1723 Blast hits to 1718 proteins in 184 species: Archae - 0; Bacteria - 0; Metazoa - 1179; Fungi - 248; Plants - 58; Viruses - 13; Other Eukaryotes - 225 (source: NCBI BLink).  protein_id AT3G06470.1p  transcript_id AT3G06470.1  protein_id AT3G06470.1p  transcript_id AT3G06470.1  
At3g06480	chr3:001988584	0.0	C/1988584-1989666,1988289-1988483,1987972-1988040,1987621-1987890,1987179-1987529,1986804-1987081,1985697-1986717	AT3G06480.1  CDS  gene_syn F24P17.2, F24P17_2  go_component vacuole|GO:0005773|15539469|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_process biological_process|GO:0008150||ND  go_function ATP binding|GO:0005524||ISS  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD box RNA helicase, putative  note DEAD box RNA helicase, putative; FUNCTIONS IN: protein binding, helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), WW/Rsp5/WWP (InterPro:IPR001202), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase (TAIR:AT3G01540.4); Has 109211 Blast hits to 62170 proteins in 2363 species: Archae - 554; Bacteria - 31458; Metazoa - 36250; Fungi - 10201; Plants - 9855; Viruses - 839; Other Eukaryotes - 20054 (source: NCBI BLink).  protein_id AT3G06480.1p  transcript_id AT3G06480.1  protein_id AT3G06480.1p  transcript_id AT3G06480.1  
At3g06483	chr3:001992333	0.0	C/1992333-1992581,1991767-1992013,1991478-1991658,1991233-1991380,1990920-1991136,1990727-1990785	AT3G06483.1  CDS  gene_syn ATPDHK, PDK, PYRUVATE DEHYDROGENASE KINASE  gene PDK  function Pyruvate dehydrogenase kinase (PDK) specifically phosphorylates the E1& 945; subunit of the pyruvate dehydrogenase complex (PDC) on a Ser residue using ATP as a phosphate donor. PDK is a unique type of protein kinase having a His-kinase-like sequence but Ser-kinase activity. Site-directed mutagenesis and structural analysis indicate that PDK belongs to the GHKL superfamily.  go_process signal transduction|GO:0007165||IEA  go_process phosphorylation|GO:0016310||IEA  go_process peptidyl-histidine phosphorylation|GO:0018106||IEA  go_component mitochondrion|GO:0005739|10737148|NAS  go_function pyruvate dehydrogenase (acetyl-transferring) kinase activity|GO:0004740|10737148|IMP  go_function ATP binding|GO:0005524|15629119|IDA  go_function ATP binding|GO:0005524||ISS  go_function histidine phosphotransfer kinase activity|GO:0009927|10861228|IDA  product PDK (PYRUVATE DEHYDROGENASE KINASE); ATP binding / histidine phosphotransfer kinase/ pyruvate dehydrogenase (acetyl-transferring) kinase  note PYRUVATE DEHYDROGENASE KINASE (PDK); FUNCTIONS IN: histidine phosphotransfer kinase activity, pyruvate dehydrogenase (acetyl-transferring) kinase activity, ATP binding; INVOLVED IN: signal transduction, peptidyl-histidine phosphorylation, phosphorylation; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, core (InterPro:IPR005467), ATP-binding region, ATPase-like (InterPro:IPR003594), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); Has 1314 Blast hits to 1242 proteins in 341 species: Archae - 0; Bacteria - 443; Metazoa - 400; Fungi - 289; Plants - 62; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).  protein_id AT3G06483.1p  transcript_id AT3G06483.1  protein_id AT3G06483.1p  transcript_id AT3G06483.1  
At3g06490	chr3:002004298	0.0	W/2004298-2004451,2005192-2005321,2005671-2006358	AT3G06490.1  CDS  gene_syn AtMYB108, BOS1, BOTRYTIS-SUSCEPTIBLE1, F5E6.18, F5E6_18, MYB108, myb domain protein 108  gene MYB108  function putative transcription factor MYB108 (MYB108) mRNA,  go_process regulation of transcription, DNA-dependent|GO:0006355|11597504|ISS  go_process response to fungus|GO:0009620|15500471|IMP  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_function DNA binding|GO:0003677|11597504|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11597504|ISS  product MYB108 (myb domain protein 108); DNA binding / transcription factor  note myb domain protein 108 (MYB108); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 6 processes; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: AtMYB78 (myb domain protein 78); DNA binding / transcription factor (TAIR:AT5G49620.1); Has 6148 Blast hits to 5715 proteins in 346 species: Archae - 0; Bacteria - 0; Metazoa - 632; Fungi - 255; Plants - 3697; Viruses - 4; Other Eukaryotes - 1560 (source: NCBI BLink).  protein_id AT3G06490.1p  transcript_id AT3G06490.1  protein_id AT3G06490.1p  transcript_id AT3G06490.1  
At3g06500	chr3:002012309	0.0	W/2012309-2013058,2013820-2013985,2014139-2014350,2014435-2014928,2015010-2015058,2015148-2015471	AT3G06500.1  CDS  gene_syn F5E6.17, F5E6_17  go_function catalytic activity|GO:0003824||IEA  go_process biological_process|GO:0008150||ND  go_function beta-fructofuranosidase activity|GO:0004564||ISS  product beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative  note beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative; FUNCTIONS IN: catalytic activity, beta-fructofuranosidase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plant neutral invertase (InterPro:IPR006937), Six-hairpin glycosidase-like (InterPro:IPR008928); BEST Arabidopsis thaliana protein match is: beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative (TAIR:AT1G56560.1); Has 513 Blast hits to 512 proteins in 77 species: Archae - 0; Bacteria - 104; Metazoa - 0; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 236 (source: NCBI BLink).  protein_id AT3G06500.1p  transcript_id AT3G06500.1  protein_id AT3G06500.1p  transcript_id AT3G06500.1  
At3g06510	chr3:002016450	0.0	W/2016450-2016612,2016849-2017125,2017215-2017353,2017473-2017639,2017711-2017932,2018020-2018188,2018291-2018524,2018835-2018984,2019086-2019215,2019316-2019533	AT3G06510.1  CDS  gene_syn ATSFR2, F5E6.16, F5E6_16, SENSITIVE TO FREEZING 2, SFR2  gene SFR2  function Encodes a protein with beta-glucosidase activity, mutants show increased sensitivity to freezing  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast outer membrane|GO:0009707|12649433|ISS  go_component chloroplast envelope|GO:0009941|18466306|IDA  go_process response to freezing|GO:0050826|18466306|IMP  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function beta-glucosidase activity|GO:0008422|15258268|IDA  product SFR2 (SENSITIVE TO FREEZING 2); beta-glucosidase/ hydrolase, hydrolyzing O-glycosyl compounds  note SENSITIVE TO FREEZING 2 (SFR2); FUNCTIONS IN: beta-glucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to freezing; LOCATED IN: chloroplast outer membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU16 (BETA GLUCOSIDASE 16); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT3G60130.3); Has 5845 Blast hits to 5251 proteins in 785 species: Archae - 102; Bacteria - 3271; Metazoa - 728; Fungi - 128; Plants - 768; Viruses - 0; Other Eukaryotes - 848 (source: NCBI BLink).  protein_id AT3G06510.1p  transcript_id AT3G06510.1  protein_id AT3G06510.1p  transcript_id AT3G06510.1  
At3g06510	chr3:002016450	0.0	W/2016450-2016612,2016849-2017125,2017215-2017353,2017473-2017639,2017711-2017932,2018020-2018524,2018835-2018984,2019086-2019215,2019316-2019533	AT3G06510.2  CDS  gene_syn ATSFR2, F5E6.16, F5E6_16, SENSITIVE TO FREEZING 2, SFR2  gene SFR2  function Encodes a protein with beta-glucosidase activity, mutants show increased sensitivity to freezing  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast outer membrane|GO:0009707|12649433|ISS  go_component chloroplast envelope|GO:0009941|18466306|IDA  go_process response to freezing|GO:0050826|18466306|IMP  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function beta-glucosidase activity|GO:0008422|15258268|IDA  product SFR2 (SENSITIVE TO FREEZING 2); beta-glucosidase/ hydrolase, hydrolyzing O-glycosyl compounds  note SENSITIVE TO FREEZING 2 (SFR2); FUNCTIONS IN: beta-glucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to freezing; LOCATED IN: chloroplast outer membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU16 (BETA GLUCOSIDASE 16); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT3G60130.1); Has 5830 Blast hits to 5256 proteins in 788 species: Archae - 102; Bacteria - 3213; Metazoa - 713; Fungi - 160; Plants - 797; Viruses - 0; Other Eukaryotes - 845 (source: NCBI BLink).  protein_id AT3G06510.2p  transcript_id AT3G06510.2  protein_id AT3G06510.2p  transcript_id AT3G06510.2  
At3g06520	chr3:002020284	0.0	W/2020284-2020721,2020993-2021955	AT3G06520.1  CDS  gene_syn F5E6.15, F5E6_15  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  product agenet domain-containing protein  note agenet domain-containing protein; FUNCTIONS IN: RNA binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein (TAIR:AT1G09320.1); Has 268 Blast hits to 147 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 263; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G06520.1p  transcript_id AT3G06520.1  protein_id AT3G06520.1p  transcript_id AT3G06520.1  
At3g06530	chr3:002022596	0.0	W/2022596-2022755,2022844-2023057,2023140-2023235,2023327-2023444,2023535-2023708,2023802-2023972,2024144-2024199,2024291-2024380,2024469-2024617,2024727-2024809,2024890-2025018,2025104-2025172,2025272-2025440,2025538-2025677,2025763-2025849,2025965-2026165,2026312-2026419,2026698-2026745,2026838-2026981,2027092-2027248,2027436-2027569,2027668-2027717,2027826-2027984,2028220-2028295,2028424-2028594,2028696-2028764,2028846-2028950,2029060-2029149,2029341-2029558,2029666-2029873,2029950-2030132,2030281-2030376,2030459-2030526,2030613-2030964,2031134-2031349,2031582-2032238,2032318-2032727,2032821-2033052,2033150-2033320,2033407-2033637	AT3G06530.1  CDS  gene_syn F5E6.14, F5E6_14  go_component vacuole|GO:0005773|15539469|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_function binding|GO:0005488||IEA  product binding  note binding; FUNCTIONS IN: binding; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BP28, C-terminal (InterPro:IPR012954), Armadillo-type fold (InterPro:IPR016024); Has 607 Blast hits to 308 proteins in 146 species: Archae - 0; Bacteria - 6; Metazoa - 274; Fungi - 218; Plants - 42; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT3G06530.1p  transcript_id AT3G06530.1  protein_id AT3G06530.1p  transcript_id AT3G06530.1  
At3g06540	chr3:002036947	0.0	C/2036947-2037662,2036704-2036826,2036489-2036588,2036365-2036403,2036028-2036280,2035851-2035926,2035552-2035744,2035384-2035467,2035201-2035308	AT3G06540.1  CDS  gene_syn F5E6.13, F5E6_13  go_process intracellular protein transport|GO:0006886||IEA  go_process regulation of GTPase activity|GO:0043087||IEA  go_component cellular_component|GO:0005575||ND  go_process protein transport|GO:0015031||ISS  go_function RAB GDP-dissociation inhibitor activity|GO:0005093||ISS  product GDP dissociation inhibitor family protein / Rab GTPase activator family protein  note GDP dissociation inhibitor family protein / Rab GTPase activator family protein; FUNCTIONS IN: RAB GDP-dissociation inhibitor activity; INVOLVED IN: intracellular protein transport, regulation of GTPase activity, protein transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rab GTPase activator (InterPro:IPR002005), Rab protein geranylgeranyltransferase component A, eukaryota (InterPro:IPR016664), Yeast Mrs6p protein (InterPro:IPR000632), GDP dissociation inhibitor (InterPro:IPR018203); BEST Arabidopsis thaliana protein match is: ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1); RAB GDP-dissociation inhibitor (TAIR:AT2G44100.2); Has 948 Blast hits to 858 proteins in 184 species: Archae - 0; Bacteria - 2; Metazoa - 512; Fungi - 195; Plants - 103; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).  protein_id AT3G06540.1p  transcript_id AT3G06540.1  protein_id AT3G06540.1p  transcript_id AT3G06540.1  
At3g06545	chr3:002038312	0.0	W/2038312-2038810,2038901-2038977	AT3G06545.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11060.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G06545.1p  transcript_id AT3G06545.1  protein_id AT3G06545.1p  transcript_id AT3G06545.1  
At3g06550	chr3:002042632	0.0	C/2042632-2042664,2042401-2042492,2042170-2042310,2042032-2042088,2041860-2041932,2041418-2041576,2041181-2041330,2040845-2041100,2040629-2040744,2040441-2040527,2040255-2040343,2040105-2040167,2039964-2040020,2039732-2039828,2039483-2039641,2039317-2039322	AT3G06550.3  CDS  gene_syn F5E6.12, F5E6_12  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Cas1p-like (InterPro:IPR012419); BEST Arabidopsis thaliana protein match is: O-acetyltransferase family protein (TAIR:AT2G34410.2); Has 185 Blast hits to 183 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 97; Fungi - 25; Plants - 56; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT3G06550.3p  transcript_id AT3G06550.3  protein_id AT3G06550.3p  transcript_id AT3G06550.3  
At3g06550	chr3:002042632	0.0	C/2042632-2042664,2042401-2042492,2042170-2042313,2042032-2042088,2041860-2041932,2041418-2041576,2041181-2041330,2040845-2041100,2040629-2040744,2040441-2040527,2040255-2040343,2040105-2040167,2039964-2040020,2039732-2039828,2039408-2039641	AT3G06550.2  CDS  gene_syn F5E6.12, F5E6_12  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Cas1p-like (InterPro:IPR012419); BEST Arabidopsis thaliana protein match is: O-acetyltransferase family protein (TAIR:AT2G34410.2); Has 185 Blast hits to 183 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 97; Fungi - 25; Plants - 56; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT3G06550.2p  transcript_id AT3G06550.2  protein_id AT3G06550.2p  transcript_id AT3G06550.2  
At3g06550	chr3:002042632	0.0	C/2042632-2042664,2042401-2042492,2042170-2042313,2042032-2042088,2041860-2041932,2041418-2041576,2041181-2041330,2040845-2041100,2040629-2040744,2040441-2040527,2040255-2040343,2040105-2040167,2039964-2040020,2039732-2039828,2039483-2039641,2039317-2039322	AT3G06550.1  CDS  gene_syn F5E6.12, F5E6_12  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Cas1p-like (InterPro:IPR012419); BEST Arabidopsis thaliana protein match is: O-acetyltransferase family protein (TAIR:AT2G34410.2); Has 185 Blast hits to 183 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 97; Fungi - 25; Plants - 56; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT3G06550.1p  transcript_id AT3G06550.1  protein_id AT3G06550.1p  transcript_id AT3G06550.1  
At3g06560	chr3:002044443	0.0	W/2044443-2044470,2044650-2044690,2044773-2044850,2044924-2045031,2045150-2045212,2045299-2045460,2045545-2045658,2045731-2045793,2045880-2046176,2046334-2046498,2046630-2047034	AT3G06560.1  CDS  gene_syn F5E6.11, F5E6_11  go_component nucleus|GO:0005634||IEA  go_process transcription|GO:0006350||IEA  go_process RNA 3 -end processing|GO:0031123||IEA  go_process RNA polyadenylation|GO:0043631||IEA  go_process transcription|GO:0006350||ISS  go_function polynucleotide adenylyltransferase activity|GO:0004652||ISS  go_function protein binding|GO:0005515|15297145|IPI  product polynucleotide adenylyltransferase/ protein binding  note polynucleotide adenylyltransferase/ protein binding; FUNCTIONS IN: protein binding, polynucleotide adenylyltransferase activity; INVOLVED IN: RNA 3 -end processing, RNA polyadenylation, transcription; LOCATED IN: nucleus; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Poly(A) polymerase, central region (InterPro:IPR007012), Poly(A) polymerase, RNA-binding region (InterPro:IPR007010); BEST Arabidopsis thaliana protein match is: nPAP (NUCLEAR POLY(A) POLYMERASE); nucleotidyltransferase/ protein binding (TAIR:AT4G32850.9); Has 562 Blast hits to 558 proteins in 159 species: Archae - 0; Bacteria - 9; Metazoa - 229; Fungi - 134; Plants - 98; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).  protein_id AT3G06560.1p  transcript_id AT3G06560.1  protein_id AT3G06560.1p  transcript_id AT3G06560.1  
At3g06570	chr3:002047369	0.0	C/2047369-2048541	AT3G06570.1  CDS  gene_syn F5E6.10, F5E6_10  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT5G51250.1); Has 541 Blast hits to 526 proteins in 21 species: Archae - 0; Bacteria - 5; Metazoa - 6; Fungi - 0; Plants - 528; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G06570.1p  transcript_id AT3G06570.1  protein_id AT3G06570.1p  transcript_id AT3G06570.1  
At3g06580	chr3:002051705	0.0	C/2051705-2051867,2051333-2051508,2051175-2051221,2050990-2051084,2050807-2050889,2050651-2050719,2050373-2050558,2050150-2050284,2049892-2050026,2049735-2049805,2049576-2049653,2049351-2049492,2049141-2049251	AT3G06580.1  CDS  gene_syn F5E6.9, F5E6_9, GAL1, GALACTOSE KINASE 1, GALK  gene GALK  function Encodes a protein with galactose kinase activity. The gene was shown to complement the yeast & 916;gal1 mutant defective in the galactokinase gene GAL1.  go_component cytoplasm|GO:0005737||IEA  go_process galactose metabolic process|GO:0006012||IEA  go_process metabolic process|GO:0008152||IEA  go_process phosphorylation|GO:0016310||IEA  go_process carbohydrate phosphorylation|GO:0046835||IEA  go_function galactokinase activity|GO:0004335|10344205|IDA  go_function galactokinase activity|GO:0004335|9225860|IGI  go_function galactokinase activity|GO:0004335||ISS  go_function ATP binding|GO:0005524||ISS  product GALK; ATP binding / galactokinase  note GALK; FUNCTIONS IN: galactokinase activity, ATP binding; INVOLVED IN: galactose metabolic process, carbohydrate phosphorylation, metabolic process, phosphorylation; LOCATED IN: cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GHMP kinase, ATP-binding, conserved site (InterPro:IPR006203), Galactokinase (InterPro:IPR000705), Mevalonate and galactokinase (InterPro:IPR006206), GHMP kinase (InterPro:IPR006204), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721), GHMP kinase, C-terminal (InterPro:IPR013750); BEST Arabidopsis thaliana protein match is: ARA1 (ARABINOSE KINASE); ATP binding / L-arabinokinase/ galactokinase (TAIR:AT4G16130.1); Has 2873 Blast hits to 2655 proteins in 790 species: Archae - 147; Bacteria - 1494; Metazoa - 246; Fungi - 127; Plants - 72; Viruses - 0; Other Eukaryotes - 787 (source: NCBI BLink).  protein_id AT3G06580.1p  transcript_id AT3G06580.1  protein_id AT3G06580.1p  transcript_id AT3G06580.1  
At3g06590	chr3:002054647	0.0	C/2054647-2055312	AT3G06590.1  CDS  gene_syn F5E6.8, F5E6_8  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|12679534|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT3G17100.2); Has 141 Blast hits to 141 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G06590.1p  transcript_id AT3G06590.1  protein_id AT3G06590.1p  transcript_id AT3G06590.1  
At3g06590	chr3:002054647	0.0	C/2054647-2055312	AT3G06590.2  CDS  gene_syn F5E6.8, F5E6_8  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|12679534|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT3G17100.2); Has 141 Blast hits to 141 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G06590.2p  transcript_id AT3G06590.2  protein_id AT3G06590.2p  transcript_id AT3G06590.2  
At3g06600	chr3:002060366	0.0	C/2060366-2060458,2060149-2060271,2059558-2059923	AT3G06600.1  CDS  gene_syn F5E6.7, F5E6_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G06600.1p  transcript_id AT3G06600.1  protein_id AT3G06600.1p  transcript_id AT3G06600.1  
At3g06600	chr3:002060366	0.0	C/2060366-2060458,2060149-2060271,2059558-2059923	AT3G06600.2  CDS  gene_syn F5E6.7, F5E6_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G06600.2p  transcript_id AT3G06600.2  protein_id AT3G06600.2p  transcript_id AT3G06600.2  
At3g06610	chr3:002060837	0.0	W/2060837-2060968,2061067-2061122,2061609-2061675,2061753-2061845	AT3G06610.1  CDS  gene_syn F5E6.6, F5E6_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DNA-binding enhancer protein-related  note DNA-binding enhancer protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 145 Blast hits to 145 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 98; Fungi - 15; Plants - 20; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT3G06610.1p  transcript_id AT3G06610.1  protein_id AT3G06610.1p  transcript_id AT3G06610.1  
At3g06620	chr3:002066756	0.0	C/2066756-2067138,2066158-2066611,2065412-2066081,2065265-2065305,2065071-2065139,2064711-2064811,2064523-2064601,2064223-2064321,2063955-2064023,2063817-2063866,2063642-2063723,2063103-2063197,2062833-2062962	AT3G06620.1  CDS  gene_syn F5E6.5, F5E6_5  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: signal transduction, protein amino acid phosphorylation, regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Protein kinase, core (InterPro:IPR000719), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G06640.1); Has 91414 Blast hits to 90271 proteins in 3280 species: Archae - 139; Bacteria - 8405; Metazoa - 40264; Fungi - 7456; Plants - 18713; Viruses - 464; Other Eukaryotes - 15973 (source: NCBI BLink).  protein_id AT3G06620.1p  transcript_id AT3G06620.1  protein_id AT3G06620.1p  transcript_id AT3G06620.1  
At3g06630	chr3:002073526	0.0	C/2073526-2073791,2073034-2073451,2072312-2072954,2072144-2072184,2071953-2072021,2071716-2071816,2071556-2071634,2071306-2071404,2071093-2071161,2070957-2071006,2070787-2070868,2070388-2070486	AT3G06630.1  CDS  gene_syn T8E24.13, T8E24_13  go_process two-component signal transduction system (phosphorelay)|GO:0000160||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process signal transduction|GO:0007165||IEA  go_function two-component sensor activity|GO:0000155||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function signal transducer activity|GO:0004871||IEA  go_function ATP binding|GO:0005524||IEA  go_process signal transduction|GO:0007165||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function signal transducer activity|GO:0004871||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: two-component sensor activity, protein serine/threonine kinase activity, protein kinase activity, signal transducer activity, ATP binding; INVOLVED IN: signal transduction, protein amino acid phosphorylation, regulation of transcription, DNA-dependent, two-component signal transduction system (phosphorelay); EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Protein kinase, core (InterPro:IPR000719), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), PAS-associated, C-terminal (InterPro:IPR000700), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G06620.1); Has 92499 Blast hits to 91232 proteins in 3406 species: Archae - 215; Bacteria - 9250; Metazoa - 40385; Fungi - 7481; Plants - 18800; Viruses - 468; Other Eukaryotes - 15900 (source: NCBI BLink).  protein_id AT3G06630.1p  transcript_id AT3G06630.1  protein_id AT3G06630.1p  transcript_id AT3G06630.1  
At3g06640	chr3:002078052	0.0	C/2078052-2078317,2077512-2077962,2076787-2077432,2076610-2076650,2076420-2076488,2076227-2076327,2076040-2076118,2075759-2075857,2075514-2075582,2075372-2075421,2075199-2075280,2075036-2075130,2074786-2074893,2074538-2074673	AT3G06640.1  CDS  gene_syn T8E24.12  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: signal transduction, protein amino acid phosphorylation, regulation of transcription, DNA-dependent; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Protein kinase, core (InterPro:IPR000719), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G06620.1); Has 90840 Blast hits to 89588 proteins in 3370 species: Archae - 131; Bacteria - 8311; Metazoa - 40051; Fungi - 7290; Plants - 18753; Viruses - 461; Other Eukaryotes - 15843 (source: NCBI BLink).  protein_id AT3G06640.1p  transcript_id AT3G06640.1  protein_id AT3G06640.1p  transcript_id AT3G06640.1  
At3g06650	chr3:002082534	0.0	C/2082534-2082633,2082326-2082428,2082179-2082244,2081968-2082091,2081705-2081839,2081532-2081592,2081351-2081427,2081011-2081166,2080788-2080916,2080574-2080706,2080356-2080483,2080162-2080267,2080002-2080078,2079839-2079909,2079405-2079689,2079247-2079322	AT3G06650.1  CDS  gene_syn ACLB-1, T8E24.7, T8E24_7  gene ACLB-1  function One of the two genes encoding subunit B of the trimeric enzyme ATP Citrate lyase  go_component membrane|GO:0016020|17432890|IDA  go_component citrate lyase complex|GO:0009346|12376641|ISS  go_process acetyl-CoA biosynthetic process|GO:0006085|12376641|TAS  go_function ATP citrate synthase activity|GO:0003878|12376641|ISS  product ACLB-1; ATP citrate synthase  note ACLB-1; FUNCTIONS IN: ATP citrate synthase activity; INVOLVED IN: acetyl-CoA biosynthetic process; LOCATED IN: citrate lyase complex, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Succinyl-CoA synthetase, beta subunit, conserved site (InterPro:IPR017866), Citrate synthase-like, small alpha subdomain (InterPro:IPR016143), Succinyl-CoA ligase, alpha subunit (InterPro:IPR005810), ATP-citrate lyase/succinyl-CoA ligase (InterPro:IPR005811), NAD(P)-binding (InterPro:IPR016040), Citrate synthase-like, core (InterPro:IPR016141), ATP-citrate lyase/succinyl-CoA ligase, active site (InterPro:IPR017440), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2); ATP citrate synthase (TAIR:AT5G49460.1); Has 5963 Blast hits to 5960 proteins in 1233 species: Archae - 160; Bacteria - 2311; Metazoa - 498; Fungi - 183; Plants - 84; Viruses - 0; Other Eukaryotes - 2727 (source: NCBI BLink).  protein_id AT3G06650.1p  transcript_id AT3G06650.1  protein_id AT3G06650.1p  transcript_id AT3G06650.1  
At3g66652	chr3:002084030	0.0	W/2084030-2084493,2084610-2084736,2084831-2084926,2085005-2086798,2086850-2086963,2087209-2087556	AT3G66652.1  CDS  gene_syn T8E24.6, T8E24_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product fip1 motif-containing protein  note fip1 motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Fip1 (InterPro:IPR007854); BEST Arabidopsis thaliana protein match is: ATFIP1[V] (Arabidopsis homolog of yeast Fip1 [V]); RNA binding / protein binding (TAIR:AT5G58040.1); Has 851 Blast hits to 729 proteins in 164 species: Archae - 0; Bacteria - 45; Metazoa - 393; Fungi - 151; Plants - 63; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink).  protein_id AT3G66652.1p  transcript_id AT3G66652.1  protein_id AT3G66652.1p  transcript_id AT3G66652.1  
At3g66654	chr3:002088694	0.0	W/2088694-2088845,2088962-2089007,2089132-2089182,2089356-2089441,2089739-2089876,2089974-2090124,2090211-2090297	AT3G66654.1  CDS  gene_syn T8E24.14, T8E24_14  go_component plasma membrane|GO:0005886|17317660|IDA  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||IEA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process protein folding|GO:0006457||ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein  note peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: Golgi apparatus, plasma membrane; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein (TAIR:AT2G47320.1); Has 6847 Blast hits to 6845 proteins in 1174 species: Archae - 74; Bacteria - 2212; Metazoa - 1539; Fungi - 761; Plants - 564; Viruses - 0; Other Eukaryotes - 1697 (source: NCBI BLink).  protein_id AT3G66654.1p  transcript_id AT3G66654.1  protein_id AT3G66654.1p  transcript_id AT3G66654.1  
At3g66654	chr3:002088694	0.0	W/2088694-2088845,2088962-2089007,2089132-2089182,2089356-2089441,2089739-2089876,2089974-2090124,2090211-2090297	AT3G66654.2  CDS  gene_syn T8E24.14, T8E24_14  go_component plasma membrane|GO:0005886|17317660|IDA  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||IEA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process protein folding|GO:0006457||ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein  note peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: Golgi apparatus, plasma membrane; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein (TAIR:AT2G47320.1); Has 6847 Blast hits to 6845 proteins in 1174 species: Archae - 74; Bacteria - 2212; Metazoa - 1539; Fungi - 761; Plants - 564; Viruses - 0; Other Eukaryotes - 1697 (source: NCBI BLink).  protein_id AT3G66654.2p  transcript_id AT3G66654.2  protein_id AT3G66654.2p  transcript_id AT3G66654.2  
At3g66654	chr3:002088694	0.0	W/2088694-2088845,2088962-2089007,2089132-2089182,2089356-2089441,2089739-2089876,2089974-2090124,2090211-2090297	AT3G66654.3  CDS  gene_syn T8E24.14, T8E24_14  go_component plasma membrane|GO:0005886|17317660|IDA  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||IEA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process protein folding|GO:0006457||ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein  note peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: Golgi apparatus, plasma membrane; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein (TAIR:AT2G47320.1); Has 6847 Blast hits to 6845 proteins in 1174 species: Archae - 74; Bacteria - 2212; Metazoa - 1539; Fungi - 761; Plants - 564; Viruses - 0; Other Eukaryotes - 1697 (source: NCBI BLink).  protein_id AT3G66654.3p  transcript_id AT3G66654.3  protein_id AT3G66654.3p  transcript_id AT3G66654.3  
At3g66656	chr3:002091262	0.0	C/2091262-2091798	AT3G66656.1  CDS  gene_syn AGL91, T8E24.5, T8E24_5  gene AGL91  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL91; transcription factor  note AGL91; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL29 (AGAMOUS-LIKE 29); transcription factor (TAIR:AT2G34440.1); Has 4105 Blast hits to 4104 proteins in 529 species: Archae - 0; Bacteria - 0; Metazoa - 545; Fungi - 206; Plants - 3304; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT3G66656.1p  transcript_id AT3G66656.1  protein_id AT3G66656.1p  transcript_id AT3G66656.1  
At3g66658	chr3:002098902	0.0	C/2098902-2099013,2098763-2098806,2098399-2098503,2098125-2098252,2097900-2098022,2097652-2097805,2097310-2097413,2097153-2097231,2096986-2097081,2096739-2096876,2096152-2096367,2095853-2096044,2095584-2095731,2095471-2095496	AT3G66658.1  CDS  gene_syn ALDH22a1, Aldehyde Dehydrogenase 22a1, T8E24.4, T8E24_4  gene ALDH22a1  function Encodes a putative aldehyde dehydrogenase. The gene is not responsive to osmotic stress and is expressed constitutively at a low level in plantlets and root cultures.  go_process metabolic process|GO:0008152||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_function 3-chloroallyl aldehyde dehydrogenase activity|GO:0004028||ISS  product ALDH22a1 (Aldehyde Dehydrogenase 22a1); 3-chloroallyl aldehyde dehydrogenase/ oxidoreductase  note Aldehyde Dehydrogenase 22a1 (ALDH22a1); FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, oxidoreductase activity; INVOLVED IN: metabolic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: ALDH10A8; 3-chloroallyl aldehyde dehydrogenase/ oxidoreductase (TAIR:AT1G74920.1); Has 39386 Blast hits to 39340 proteins in 1763 species: Archae - 238; Bacteria - 18628; Metazoa - 2176; Fungi - 1313; Plants - 574; Viruses - 0; Other Eukaryotes - 16457 (source: NCBI BLink).  protein_id AT3G66658.1p  transcript_id AT3G66658.1  protein_id AT3G66658.1p  transcript_id AT3G66658.1  
At3g66658	chr3:002098902	0.0	C/2098902-2099013,2098763-2098806,2098399-2098503,2098125-2098252,2097900-2098022,2097652-2097805,2097310-2097413,2097153-2097231,2096986-2097081,2096739-2096876,2096152-2096367,2095853-2096044,2095588-2095731,2095341-2095496	AT3G66658.2  CDS  gene_syn ALDH22a1, Aldehyde Dehydrogenase 22a1, T8E24.4, T8E24_4  gene ALDH22a1  function Encodes a putative aldehyde dehydrogenase. The gene is not responsive to osmotic stress and is expressed constitutively at a low level in plantlets and root cultures.  go_process metabolic process|GO:0008152||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_function 3-chloroallyl aldehyde dehydrogenase activity|GO:0004028||ISS  product ALDH22a1 (Aldehyde Dehydrogenase 22a1); 3-chloroallyl aldehyde dehydrogenase/ oxidoreductase  note Aldehyde Dehydrogenase 22a1 (ALDH22a1); FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, oxidoreductase activity; INVOLVED IN: metabolic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: ALDH10A8; 3-chloroallyl aldehyde dehydrogenase/ oxidoreductase (TAIR:AT1G74920.1); Has 39388 Blast hits to 39342 proteins in 1763 species: Archae - 238; Bacteria - 18628; Metazoa - 2176; Fungi - 1313; Plants - 574; Viruses - 0; Other Eukaryotes - 16459 (source: NCBI BLink).  protein_id AT3G66658.2p  transcript_id AT3G66658.2  protein_id AT3G66658.2p  transcript_id AT3G66658.2  
At3g36659	chr3:002100189	0.0	W/2100189-2100983	AT3G36659.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT1G23350.1); Has 5631 Blast hits to 2242 proteins in 370 species: Archae - 12; Bacteria - 536; Metazoa - 567; Fungi - 425; Plants - 832; Viruses - 135; Other Eukaryotes - 3124 (source: NCBI BLink).  protein_id AT3G36659.1p  transcript_id AT3G36659.1  protein_id AT3G36659.1p  transcript_id AT3G36659.1  
At3g06660	chr3:002103060	0.0	W/2103060-2103359,2103452-2103968,2104048-2104148,2104239-2104328,2104404-2104531,2104629-2104776	AT3G06660.1  CDS  gene_syn T8E24.3  go_component chloroplast|GO:0009507||IEA  go_function protein binding|GO:0005515||ISS  product PAPA-1-like family protein / zinc finger (HIT type) family protein  note PAPA-1-like family protein / zinc finger (HIT type) family protein; FUNCTIONS IN: protein binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529), PAPA-1-like conserved region (InterPro:IPR006880); BEST Arabidopsis thaliana protein match is: PAPA-1-like family protein / zinc finger (HIT type) family protein (TAIR:AT2G47350.1); Has 588 Blast hits to 461 proteins in 132 species: Archae - 0; Bacteria - 66; Metazoa - 194; Fungi - 78; Plants - 45; Viruses - 0; Other Eukaryotes - 205 (source: NCBI BLink).  protein_id AT3G06660.1p  transcript_id AT3G06660.1  protein_id AT3G06660.1p  transcript_id AT3G06660.1  
At3g06665	chr3:002104956	0.0	C/2104956-2105027	AT3G06665.1  tRNA  gene_syn 60283.TRNA-HIS-1, 60749.TRNA-HIS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-His (anticodon: GTG)  transcript_id AT3G06665.1  
At3g06670	chr3:002113092	0.0	C/2113092-2113136,2112491-2112571,2112273-2112372,2112100-2112184,2111953-2112002,2111474-2111553,2111022-2111081,2110579-2110678,2110402-2110479,2109947-2110014,2109599-2109667,2109438-2109515,2109255-2109350,2108944-2109014,2108695-2108772,2108463-2108556,2108249-2108350,2107680-2107873,2107480-2107594,2107037-2107168,2106843-2106950,2106661-2106770,2106455-2106577,2105908-2106388	AT3G06670.1  CDS  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF625 (InterPro:IPR006887); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49390.1); Has 2798 Blast hits to 2244 proteins in 244 species: Archae - 0; Bacteria - 63; Metazoa - 1367; Fungi - 471; Plants - 155; Viruses - 18; Other Eukaryotes - 724 (source: NCBI BLink).  protein_id AT3G06670.1p  transcript_id AT3G06670.1  protein_id AT3G06670.1p  transcript_id AT3G06670.1  
At3g06680	chr3:002114623	0.0	C/2114623-2114724,2114402-2114485	AT3G06680.2  CDS  gene_syn T8E24.9  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L29 (RPL29B)  note 60S ribosomal protein L29 (RPL29B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, ribosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L29e (InterPro:IPR002673); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L29 (RPL29A) (TAIR:AT3G06700.3); Has 566 Blast hits to 566 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 344; Fungi - 69; Plants - 75; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT3G06680.2p  transcript_id AT3G06680.2  protein_id AT3G06680.2p  transcript_id AT3G06680.2  
At3g06680	chr3:002114836	0.0	C/2114836-2114877,2114623-2114748,2114402-2114485	AT3G06680.1  CDS  gene_syn T8E24.9  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L29 (RPL29B)  note 60S ribosomal protein L29 (RPL29B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, ribosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L29e (InterPro:IPR002673); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L29 (RPL29A) (TAIR:AT3G06700.3); Has 566 Blast hits to 566 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 344; Fungi - 69; Plants - 75; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT3G06680.1p  transcript_id AT3G06680.1  protein_id AT3G06680.1p  transcript_id AT3G06680.1  
At3g06690	chr3:002116773	0.0	C/2116773-2116825,2116548-2116608,2116349-2116453,2116149-2116250,2115589-2115831	AT3G06690.1  CDS  go_component peroxisome|GO:0005777||IEA  go_process fatty acid metabolic process|GO:0006631||IEA  go_process fatty acid beta-oxidation|GO:0006635||IEA  go_function acyl-CoA oxidase activity|GO:0003997||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on the CH-CH group of donors|GO:0016627||IEA  go_function FAD binding|GO:0050660||IEA  go_function acyl-CoA oxidase activity|GO:0003997||ISS  product FAD binding / acyl-CoA oxidase/ electron carrier/ oxidoreductase/ oxidoreductase, acting on the CH-CH group of donors  note FAD binding / acyl-CoA oxidase/ electron carrier/ oxidoreductase/ oxidoreductase, acting on the CH-CH group of donors; FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors, electron carrier activity, oxidoreductase activity, FAD binding, acyl-CoA oxidase activity; INVOLVED IN: fatty acid beta-oxidation, fatty acid metabolic process; LOCATED IN: peroxisome; CONTAINS InterPro DOMAIN/s: Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal (InterPro:IPR013764), Acyl-CoA oxidase (InterPro:IPR012258), Acyl-CoA oxidase, C-terminal (InterPro:IPR002655), Acyl-CoA dehydrogenase/oxidase C-terminal (InterPro:IPR009075); BEST Arabidopsis thaliana protein match is: ACX3 (ACYL-COA OXIDASE 3); acyl-CoA oxidase (TAIR:AT1G06290.1); Has 105 Blast hits to 105 proteins in 37 species: Archae - 0; Bacteria - 50; Metazoa - 13; Fungi - 4; Plants - 32; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G06690.1p  transcript_id AT3G06690.1  protein_id AT3G06690.1p  transcript_id AT3G06690.1  
At3g06700	chr3:002117699	0.0	C/2117699-2117800,2117519-2117602	AT3G06700.1  CDS  go_component nucleolus|GO:0005730|15496452|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L29 (RPL29A)  note 60S ribosomal protein L29 (RPL29A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, ribosome, nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L29e (InterPro:IPR002673); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L29 (RPL29B) (TAIR:AT3G06680.2); Has 567 Blast hits to 567 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 345; Fungi - 69; Plants - 75; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT3G06700.1p  transcript_id AT3G06700.1  protein_id AT3G06700.1p  transcript_id AT3G06700.1  
At3g06700	chr3:002117699	0.0	C/2117699-2117800,2117519-2117602	AT3G06700.2  CDS  go_component nucleolus|GO:0005730|15496452|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L29 (RPL29A)  note 60S ribosomal protein L29 (RPL29A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, ribosome, nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L29e (InterPro:IPR002673); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L29 (RPL29B) (TAIR:AT3G06680.2); Has 567 Blast hits to 567 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 345; Fungi - 69; Plants - 75; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT3G06700.2p  transcript_id AT3G06700.2  protein_id AT3G06700.2p  transcript_id AT3G06700.2  
At3g06700	chr3:002117699	0.0	C/2117699-2117800,2117519-2117602	AT3G06700.3  CDS  go_component nucleolus|GO:0005730|15496452|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L29 (RPL29A)  note 60S ribosomal protein L29 (RPL29A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, ribosome, nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L29e (InterPro:IPR002673); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L29 (RPL29B) (TAIR:AT3G06680.2); Has 567 Blast hits to 567 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 345; Fungi - 69; Plants - 75; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT3G06700.3p  transcript_id AT3G06700.3  protein_id AT3G06700.3p  transcript_id AT3G06700.3  
At3g06710	chr3:002118767	0.0	W/2118767-2119207,2119317-2119613	AT3G06710.1  CDS  gene_syn T8E24.2  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT4G32670.1); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G06710.1p  transcript_id AT3G06710.1  protein_id AT3G06710.1p  transcript_id AT3G06710.1  
At3g06720	chr3:002120559	0.0	W/2120559-2120768,2120935-2121031,2121130-2121221,2121300-2121431,2121539-2121724,2121805-2121968,2122056-2122134,2122712-2122840,2122942-2123069,2123174-2123555	AT3G06720.1  CDS  gene_syn AIMP ALPHA, AT-IMP, ATKAP ALPHA, IMPA-1, IMPA1, IMPORTIN ALPHA, IMPORTIN ALPHA ISOFORM 1  gene IMPA-1  function Encodes importin alpha involved in nuclear import. Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_process protein import into nucleus|GO:0006606||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function binding|GO:0005488||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component nuclear envelope|GO:0005635|10428841|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process intracellular protein transport|GO:0006886||ISS  go_function protein transporter activity|GO:0008565||ISS  product IMPA-1 (IMPORTIN ALPHA ISOFORM 1); binding / protein transporter  note IMPORTIN ALPHA ISOFORM 1 (IMPA-1); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus; LOCATED IN: cytosol, nuclear envelope, nucleolus, cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-alpha-like, importin-beta-binding region (InterPro:IPR002652), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: IMPA-2 (IMPORTIN ALPHA ISOFORM 2); binding / protein transporter (TAIR:AT4G16143.2); Has 2883 Blast hits to 2167 proteins in 216 species: Archae - 4; Bacteria - 22; Metazoa - 1364; Fungi - 434; Plants - 562; Viruses - 0; Other Eukaryotes - 497 (source: NCBI BLink).  protein_id AT3G06720.1p  transcript_id AT3G06720.1  protein_id AT3G06720.1p  transcript_id AT3G06720.1  
At3g06720	chr3:002120559	0.0	W/2120559-2120768,2120935-2121031,2121130-2121221,2121300-2121431,2121539-2121724,2121805-2121968,2122056-2122134,2122712-2122840,2122942-2123069,2123174-2123555	AT3G06720.2  CDS  gene_syn AIMP ALPHA, AT-IMP, ATKAP ALPHA, IMPA-1, IMPA1, IMPORTIN ALPHA, IMPORTIN ALPHA ISOFORM 1  gene IMPA-1  function Encodes importin alpha involved in nuclear import. Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_process protein import into nucleus|GO:0006606||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function binding|GO:0005488||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component nuclear envelope|GO:0005635|10428841|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process intracellular protein transport|GO:0006886||ISS  go_function protein transporter activity|GO:0008565||ISS  product IMPA-1 (IMPORTIN ALPHA ISOFORM 1); binding / protein transporter  note AT-IMP; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus; LOCATED IN: cytosol, nuclear envelope, nucleolus, cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-alpha-like, importin-beta-binding region (InterPro:IPR002652), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: IMPA-2 (IMPORTIN ALPHA ISOFORM 2); binding / protein transporter (TAIR:AT4G16143.2); Has 2883 Blast hits to 2167 proteins in 216 species: Archae - 4; Bacteria - 22; Metazoa - 1364; Fungi - 434; Plants - 562; Viruses - 0; Other Eukaryotes - 497 (source: NCBI BLink).  protein_id AT3G06720.2p  transcript_id AT3G06720.2  protein_id AT3G06720.2p  transcript_id AT3G06720.2  
At3g06730	chr3:002124276	0.0	W/2124276-2124506,2124822-2124944,2125552-2125632,2125729-2125845	AT3G06730.1  CDS  go_component nucleoid|GO:0009295|16326926|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_process cell redox homeostasis|GO:0045454||IEA  product thioredoxin family protein  note thioredoxin family protein; INVOLVED IN: cell redox homeostasis; LOCATED IN: thylakoid, chloroplast, nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Aty2 (Arabidopsis thioredoxin y2); electron carrier/ protein disulfide oxidoreductase (TAIR:AT1G43560.1); Has 10054 Blast hits to 9725 proteins in 1657 species: Archae - 115; Bacteria - 4627; Metazoa - 1415; Fungi - 518; Plants - 866; Viruses - 0; Other Eukaryotes - 2513 (source: NCBI BLink).  protein_id AT3G06730.1p  transcript_id AT3G06730.1  protein_id AT3G06730.1p  transcript_id AT3G06730.1  
At3g06740	chr3:002126658	0.0	W/2126658-2126678,2126763-2126927,2127002-2127265	AT3G06740.1  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product zinc finger (GATA type) family protein  note zinc finger (GATA type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: zinc finger (GATA type) family protein (TAIR:AT5G49300.1); Has 901 Blast hits to 878 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 71; Fungi - 376; Plants - 397; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT3G06740.1p  transcript_id AT3G06740.1  protein_id AT3G06740.1p  transcript_id AT3G06740.1  
At3g06750	chr3:002129765	0.0	C/2129765-2130208	AT3G06750.1  CDS  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 5931 Blast hits to 3103 proteins in 254 species: Archae - 0; Bacteria - 296; Metazoa - 2174; Fungi - 725; Plants - 2023; Viruses - 81; Other Eukaryotes - 632 (source: NCBI BLink).  protein_id AT3G06750.1p  transcript_id AT3G06750.1  protein_id AT3G06750.1p  transcript_id AT3G06750.1  
At3g06760	chr3:002132971	0.0	W/2132971-2133049,2133143-2133291,2133368-2133421,2133541-2133581,2133686-2133709,2133912-2134163,2134250-2134355	AT3G06760.2  CDS  go_process response to water deprivation|GO:0009414||ISS  product unknown protein  note INVOLVED IN: response to water deprivation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Drought induced 19 (InterPro:IPR008598); BEST Arabidopsis thaliana protein match is: HRB1 (HYPERSENSITIVE TO RED AND BLUE); protein binding (TAIR:AT5G49230.1).  protein_id AT3G06760.2p  transcript_id AT3G06760.2  protein_id AT3G06760.2p  transcript_id AT3G06760.2  
At3g06760	chr3:002132971	0.0	W/2132971-2133049,2133143-2133291,2133686-2133763,2133901-2134163,2134250-2134355	AT3G06760.1  CDS  go_process response to water deprivation|GO:0009414||ISS  product unknown protein  note INVOLVED IN: response to water deprivation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Drought induced 19 (InterPro:IPR008598); BEST Arabidopsis thaliana protein match is: HRB1 (HYPERSENSITIVE TO RED AND BLUE); protein binding (TAIR:AT5G49230.1); Has 133 Blast hits to 133 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G06760.1p  transcript_id AT3G06760.1  protein_id AT3G06760.1p  transcript_id AT3G06760.1  
At3g06770	chr3:002136488	0.0	C/2136488-2136616,2136282-2136402,2136011-2136185,2135850-2135920,2135119-2135756	AT3G06770.1  CDS  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: response to cyclopentenone, carbohydrate metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT5G49215.2); Has 1674 Blast hits to 1672 proteins in 246 species: Archae - 2; Bacteria - 455; Metazoa - 5; Fungi - 454; Plants - 679; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT3G06770.1p  transcript_id AT3G06770.1  protein_id AT3G06770.1p  transcript_id AT3G06770.1  
At3g06770	chr3:002136488	0.0	C/2136488-2136616,2136282-2136402,2136011-2136185,2135850-2135920,2135119-2135756	AT3G06770.3  CDS  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: response to cyclopentenone, carbohydrate metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT5G49215.2); Has 1674 Blast hits to 1672 proteins in 246 species: Archae - 2; Bacteria - 455; Metazoa - 5; Fungi - 454; Plants - 679; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT3G06770.3p  transcript_id AT3G06770.3  protein_id AT3G06770.3p  transcript_id AT3G06770.3  
At3g06770	chr3:002137028	0.0	C/2137028-2137033,2136488-2136817,2136282-2136402,2136011-2136185,2135850-2135920,2135119-2135756	AT3G06770.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: response to cyclopentenone, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT5G49215.1); Has 1737 Blast hits to 1735 proteins in 255 species: Archae - 2; Bacteria - 483; Metazoa - 5; Fungi - 453; Plants - 700; Viruses - 2; Other Eukaryotes - 92 (source: NCBI BLink).  protein_id AT3G06770.2p  transcript_id AT3G06770.2  protein_id AT3G06770.2p  transcript_id AT3G06770.2  
At3g06778	chr3:002141294	0.0	C/2141294-2141437,2141113-2141164,2140931-2140998,2140249-2140674	AT3G06778.1  CDS  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  product heat shock protein binding / unfolded protein binding  note heat shock protein binding / unfolded protein binding; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT5G49060.1); Has 13003 Blast hits to 13003 proteins in 1807 species: Archae - 91; Bacteria - 4518; Metazoa - 2691; Fungi - 972; Plants - 1000; Viruses - 10; Other Eukaryotes - 3721 (source: NCBI BLink).  protein_id AT3G06778.1p  transcript_id AT3G06778.1  protein_id AT3G06778.1p  transcript_id AT3G06778.1  
At3g06780	chr3:002143634	0.0	W/2143634-2144239	AT3G06780.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 4026 Blast hits to 2251 proteins in 290 species: Archae - 2; Bacteria - 737; Metazoa - 1865; Fungi - 196; Plants - 741; Viruses - 43; Other Eukaryotes - 442 (source: NCBI BLink).  protein_id AT3G06780.1p  transcript_id AT3G06780.1  protein_id AT3G06780.1p  transcript_id AT3G06780.1  
At3g06790	chr3:002145360	0.0	C/2145360-2145743,2145167-2145260,2144847-2144912,2144564-2144754	AT3G06790.1  CDS  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product plastid developmental protein DAG, putative  note plastid developmental protein DAG, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15000.1); Has 160 Blast hits to 148 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G06790.1p  transcript_id AT3G06790.1  protein_id AT3G06790.1p  transcript_id AT3G06790.1  
At3g06790	chr3:002145364	0.0	C/2145364-2145743,2145167-2145264,2144847-2144912,2144564-2144754	AT3G06790.2  CDS  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product plastid developmental protein DAG, putative  note plastid developmental protein DAG, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S8, subtilisin-related (InterPro:IPR015500); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15000.1); Has 163 Blast hits to 151 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 163; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G06790.2p  transcript_id AT3G06790.2  protein_id AT3G06790.2p  transcript_id AT3G06790.2  
At3g06810	chr3:002146534	0.0	W/2146534-2146668,2146757-2146891,2147104-2147244,2147357-2147488,2147604-2147789,2147870-2147947,2148037-2148156,2148272-2148370,2148452-2148569,2148643-2148884,2148965-2149162,2149248-2149390,2149561-2149645,2149733-2149942,2150042-2150194,2150265-2150369,2150460-2150654	AT3G06810.1  CDS  gene_syn AT3G06800, IBA-RESPONSE 3, IBR3  gene IBR3  function Encodes a protein with similarity to acyl-CoA dehydrogenases. Mutations in IBR3 render plants resistant to indole-3-butryic acid, a putative storage form of the biologically active auxin IAA (indole-3-acetic acid). IBR3 is hypothesized to carry out the second step in a & 946;-oxidation-like process of IBA metabolism in Arabidopsis. Though its subcellular location has not been determined, IBR3 has a peroxisomal targeting sequence and two other putative IBA metabolic enzymes (IBR1 and IBR10) can be found in this organelle. No specific enzymatic activity has been documented for IBR3, but double mutant analyses with CHY1 argue against a role for IBR3 in general fatty acid & 946;-oxidation.  go_process metabolic process|GO:0008152||IEA  go_function acyl-CoA dehydrogenase activity|GO:0003995|17277896|IGI  go_function oxidoreductase activity|GO:0016491||ISS  product IBR3 (IBA-RESPONSE 3); acyl-CoA dehydrogenase/ oxidoreductase  note IBA-RESPONSE 3 (IBR3); FUNCTIONS IN: acyl-CoA dehydrogenase activity, oxidoreductase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal (InterPro:IPR013764), Acyl-CoA oxidase/dehydrogenase, type 1 (InterPro:IPR006090), Acyl-CoA dehydrogenase/oxidase, middle and N-terminal (InterPro:IPR009100), Acyl-CoA dehydrogenase/oxidase, N-terminal (InterPro:IPR013786), Acyl-CoA dehydrogenase/oxidase, central region (InterPro:IPR006091), Acyl-CoA dehydrogenase/oxidase C-terminal (InterPro:IPR009075), Protein kinase-like (InterPro:IPR011009), Acyl-CoA dehydrogenase, N-terminal (InterPro:IPR006092), Aminoglycoside phosphotransferase (InterPro:IPR002575); BEST Arabidopsis thaliana protein match is: IVD (ISOVALERYL-COA-DEHYDROGENASE); ATP binding / isovaleryl-CoA dehydrogenase (TAIR:AT3G45300.1); Has 24745 Blast hits to 24717 proteins in 1024 species: Archae - 254; Bacteria - 13078; Metazoa - 1229; Fungi - 539; Plants - 73; Viruses - 0; Other Eukaryotes - 9572 (source: NCBI BLink).  protein_id AT3G06810.1p  transcript_id AT3G06810.1  protein_id AT3G06810.1p  transcript_id AT3G06810.1  
At3g06820	chr3:002152575	0.0	C/2152575-2152659,2152417-2152502,2152117-2152323,2151756-2151934,2151513-2151671,2151359-2151439,2151233-2151287,2151027-2151149	AT3G06820.1  CDS  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_function molecular_function|GO:0003674||ND  product mov34 family protein  note mov34 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquitin-dependent protein catabolic process; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80210.1); Has 311 Blast hits to 241 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 168; Fungi - 48; Plants - 56; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT3G06820.1p  transcript_id AT3G06820.1  protein_id AT3G06820.1p  transcript_id AT3G06820.1  
At3g06820	chr3:002153154	0.0	C/2153154-2153264,2152795-2152923,2152575-2152662,2152417-2152502,2152117-2152323,2151756-2151934,2151513-2151671,2151359-2151439,2151233-2151287,2151027-2151149	AT3G06820.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_function molecular_function|GO:0003674||ND  product mov34 family protein  note mov34 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80210.1); Has 784 Blast hits to 714 proteins in 171 species: Archae - 0; Bacteria - 7; Metazoa - 410; Fungi - 154; Plants - 118; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT3G06820.2p  transcript_id AT3G06820.2  protein_id AT3G06820.2p  transcript_id AT3G06820.2  
At3g06830	chr3:002154193	0.0	W/2154193-2154829,2154920-2155300,2155374-2156062	AT3G06830.1  CDS  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT5G49180.1); Has 1403 Blast hits to 1358 proteins in 193 species: Archae - 2; Bacteria - 257; Metazoa - 1; Fungi - 133; Plants - 963; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT3G06830.1p  transcript_id AT3G06830.1  protein_id AT3G06830.1p  transcript_id AT3G06830.1  
At3g06840	chr3:002156930	0.0	W/2156930-2157016,2157148-2157624	AT3G06840.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49170.1); Has 11 Blast hits to 11 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G06840.1p  transcript_id AT3G06840.1  protein_id AT3G06840.1p  transcript_id AT3G06840.1  
At3g06850	chr3:002160316	0.0	C/2160316-2160465,2159922-2160068,2159702-2159827,2159151-2159500,2158819-2159066,2158408-2158724,2158212-2158325	AT3G06850.1  CDS  gene_syn BCE2, DARK INDUCIBLE 3, DIN3, LTA1  gene BCE2  function dihydrolipoamide branched chain acyltransferase  go_component mitochondrion|GO:0005739|10933498|TAS  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|14764908|IDA  go_process response to light stimulus|GO:0009416|11080291|IEP  go_process response to sucrose stimulus|GO:0009744|11080291|IEP  go_function alpha-ketoacid dehydrogenase activity|GO:0003826||ISS  go_function dihydrolipoamide branched chain acyltransferase activity|GO:0004147|2188967|TAS  go_function acetyltransferase activity|GO:0016407|10933498|IDA  product BCE2; acetyltransferase/ alpha-ketoacid dehydrogenase/ dihydrolipoamide branched chain acyltransferase  note BCE2; FUNCTIONS IN: acetyltransferase activity, dihydrolipoamide branched chain acyltransferase activity, alpha-ketoacid dehydrogenase activity; INVOLVED IN: response to light stimulus, response to sucrose stimulus; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), E3 binding (InterPro:IPR004167), 2-oxoacid dehydrogenase acyltransferase, catalytic domain (InterPro:IPR001078), Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089), Lipoamide Acyltransferase (InterPro:IPR015761); BEST Arabidopsis thaliana protein match is: dihydrolipoamide S-acetyltransferase, putative (TAIR:AT1G54220.2); Has 14860 Blast hits to 13830 proteins in 1316 species: Archae - 48; Bacteria - 6188; Metazoa - 500; Fungi - 289; Plants - 194; Viruses - 0; Other Eukaryotes - 7641 (source: NCBI BLink).  protein_id AT3G06850.1p  transcript_id AT3G06850.1  protein_id AT3G06850.1p  transcript_id AT3G06850.1  
At3g06850	chr3:002160316	0.0	C/2160316-2160465,2159922-2160068,2159702-2159827,2159151-2159500,2158819-2159066,2158408-2158724,2158212-2158325	AT3G06850.2  CDS  gene_syn BCE2, DARK INDUCIBLE 3, DIN3, LTA1  gene BCE2  function dihydrolipoamide branched chain acyltransferase  go_component mitochondrion|GO:0005739|10933498|TAS  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|14764908|IDA  go_process response to light stimulus|GO:0009416|11080291|IEP  go_process response to sucrose stimulus|GO:0009744|11080291|IEP  go_function alpha-ketoacid dehydrogenase activity|GO:0003826||ISS  go_function dihydrolipoamide branched chain acyltransferase activity|GO:0004147|2188967|TAS  go_function acetyltransferase activity|GO:0016407|10933498|IDA  product BCE2; acetyltransferase/ alpha-ketoacid dehydrogenase/ dihydrolipoamide branched chain acyltransferase  note BCE2; FUNCTIONS IN: acetyltransferase activity, dihydrolipoamide branched chain acyltransferase activity, alpha-ketoacid dehydrogenase activity; INVOLVED IN: response to light stimulus, response to sucrose stimulus; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), E3 binding (InterPro:IPR004167), 2-oxoacid dehydrogenase acyltransferase, catalytic domain (InterPro:IPR001078), Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089), Lipoamide Acyltransferase (InterPro:IPR015761); BEST Arabidopsis thaliana protein match is: dihydrolipoamide S-acetyltransferase, putative (TAIR:AT1G54220.2); Has 14860 Blast hits to 13830 proteins in 1316 species: Archae - 48; Bacteria - 6188; Metazoa - 500; Fungi - 289; Plants - 194; Viruses - 0; Other Eukaryotes - 7641 (source: NCBI BLink).  protein_id AT3G06850.2p  transcript_id AT3G06850.2  protein_id AT3G06850.2p  transcript_id AT3G06850.2  
At3g06860	chr3:002161926	0.0	W/2161926-2162028,2162225-2162296,2162404-2162469,2162566-2162622,2162716-2162783,2162871-2162952,2163155-2163210,2163293-2163595,2163697-2163783,2163912-2164086,2164163-2164284,2164384-2164547,2164657-2164911,2164992-2165113,2165195-2165316,2165413-2165561,2165658-2165796,2165974-2166009	AT3G06860.1  CDS  gene_syn ATMFP2, F3E22.20, MFP2, MULTIFUNCTIONAL PROTEIN 2  gene MFP2  function Encodes a multifunctional protein. Involved in peroxisomal fatty acid beta oxidation. Loss-of-function mutant lacks hydroxyacyl-CoA dehydrogenase activity and have reduced levels of long-chain enoyl-CoA hydratase activity. The mutant has fewer but larger peroxisomes.  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component peroxisome|GO:0005777|10816107|TAS  go_process fatty acid beta-oxidation|GO:0006635|10816107|IEP  go_function 3-hydroxyacyl-CoA dehydrogenase activity|GO:0003857|16507084|IMP  go_function enoyl-CoA hydratase activity|GO:0004300|10521521|IMP  product MFP2 (MULTIFUNCTIONAL PROTEIN 2); 3-hydroxyacyl-CoA dehydrogenase/ enoyl-CoA hydratase  note MULTIFUNCTIONAL PROTEIN 2 (MFP2); FUNCTIONS IN: enoyl-CoA hydratase activity, 3-hydroxyacyl-CoA dehydrogenase activity; INVOLVED IN: fatty acid beta-oxidation; LOCATED IN: nucleolus, cell wall, peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Enoyl-CoA hydratase/isomerase, conserved site (InterPro:IPR018376), 3-hydroxyacyl-CoA dehydrogenase, conserved site (InterPro:IPR006180), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), NAD(P)-binding (InterPro:IPR016040), 3-hydroxyacyl-CoA dehydrogenase, NAD binding (InterPro:IPR006176), Crotonase, core (InterPro:IPR001753), 3-hydroxyacyl-CoA dehydrogenase, C-terminal (InterPro:IPR006108); BEST Arabidopsis thaliana protein match is: AIM1 (ABNORMAL INFLORESCENCE MERISTEM); enoyl-CoA hydratase (TAIR:AT4G29010.1); Has 32550 Blast hits to 31943 proteins in 1402 species: Archae - 335; Bacteria - 17466; Metazoa - 1750; Fungi - 651; Plants - 373; Viruses - 0; Other Eukaryotes - 11975 (source: NCBI BLink).  protein_id AT3G06860.1p  transcript_id AT3G06860.1  protein_id AT3G06860.1p  transcript_id AT3G06860.1  
At3g06868	chr3:002167872	0.0	W/2167872-2168981	AT3G06868.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49100.1); Has 1032 Blast hits to 474 proteins in 98 species: Archae - 0; Bacteria - 49; Metazoa - 464; Fungi - 149; Plants - 38; Viruses - 14; Other Eukaryotes - 318 (source: NCBI BLink).  protein_id AT3G06868.1p  transcript_id AT3G06868.1  protein_id AT3G06868.1p  transcript_id AT3G06868.1  
At3g06870	chr3:002168408	0.0	C/2168408-2168758,2167931-2168224	AT3G06870.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product proline-rich family protein  note proline-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage; Has 85 Blast hits to 82 proteins in 31 species: Archae - 0; Bacteria - 2; Metazoa - 49; Fungi - 6; Plants - 13; Viruses - 4; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT3G06870.1p  transcript_id AT3G06870.1  protein_id AT3G06870.1p  transcript_id AT3G06870.1  
At3g06880	chr3:002175010	0.0	C/2175010-2175686,2174829-2174895,2174467-2174565,2173420-2174365,2173280-2173379,2173138-2173195,2173054-2173104,2172734-2172979,2172366-2172660,2172151-2172269,2171926-2172051,2171709-2171840,2171498-2171620,2171273-2171383,2171042-2171188,2170846-2170971,2170589-2170747	AT3G06880.1  CDS  go_component cellular_component|GO:0005575||ND  go_function nucleotide binding|GO:0000166||ISS  product nucleotide binding  note nucleotide binding; FUNCTIONS IN: nucleotide binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: TOZ (TORMOZEMBRYO DEFECTIVE); nucleotide binding (TAIR:AT5G16750.1); Has 4863 Blast hits to 3773 proteins in 252 species: Archae - 6; Bacteria - 1027; Metazoa - 1708; Fungi - 1071; Plants - 360; Viruses - 0; Other Eukaryotes - 691 (source: NCBI BLink).  protein_id AT3G06880.1p  transcript_id AT3G06880.1  protein_id AT3G06880.1p  transcript_id AT3G06880.1  
At3g06890	chr3:002176949	0.0	W/2176949-2177335	AT3G06890.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 15 growth stages; Has 35 Blast hits to 35 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G06890.1p  transcript_id AT3G06890.1  protein_id AT3G06890.1p  transcript_id AT3G06890.1  
At3g06900	chr3:002178053	0.0	C/2178053-2178626	AT3G06900.1  snRNA  gene_syn 60280.SNRNA00001, U4 SMALL NUCLEOLAR RNA 2, U4.2  gene U4.2  go_component snRNP U4|GO:0005687||TAS  go_process nuclear mRNA splicing, via spliceosome|GO:0000398||TAS  go_function RNA splicing factor activity, transesterification mechanism|GO:0031202||TAS  product U4.2 (U4 SMALL NUCLEOLAR RNA 2); snRNA  note gi|17674|emb|X67146.1|ATU42SN A.thaliana U4.2 snRNA gene  transcript_id AT3G06900.1  
At3g06895	chr3:002178129	0.0	W/2178129-2178284	AT3G06895.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G06895.1p  transcript_id AT3G06895.1  protein_id AT3G06895.1p  transcript_id AT3G06895.1  
At3g06910	chr3:002180403	0.0	C/2180403-2181188,2180220-2180299,2180038-2180128,2179825-2179923,2179635-2179727,2179403-2179522,2179224-2179327,2179075-2179147,2178905-2178967	AT3G06910.1  CDS  gene_syn UB-LIKE PROTEASE 1A, ULP1A  gene ULP1A  function Encodes a deSUMOylating enzyme. In vitro it has both peptidase activity and isopeptidase activity: it can cleave the C-terminal residues from SUMO to activate it for attachment to a target protein and it can also act on the isopeptide bond between SUMO and another protein. In vitro assays suggest that this enzyme is active against SUMO1 and SUMO2. It has weak activity with SUMO3 and cannot act on SUMO5. The N-terminal regulatory region of this protein is required for full activity.  go_component cellular_component|GO:0005575||ND  go_process proteolysis|GO:0006508||ISS  go_process protein desumoylation|GO:0016926|16740136|IDA  go_function cysteine-type peptidase activity|GO:0008234||ISS  go_function SUMO-specific protease activity|GO:0016929|16740136|IDA  product ULP1A (UB-LIKE PROTEASE 1A); SUMO-specific protease/ cysteine-type peptidase  note UB-LIKE PROTEASE 1A (ULP1A); FUNCTIONS IN: cysteine-type peptidase activity, SUMO-specific protease activity; INVOLVED IN: proteolysis, protein desumoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: ESD4 (EARLY IN SHORT DAYS 4); SUMO-specific protease/ cysteine-type peptidase (TAIR:AT4G15880.1); Has 1009 Blast hits to 1008 proteins in 148 species: Archae - 0; Bacteria - 2; Metazoa - 524; Fungi - 175; Plants - 188; Viruses - 5; Other Eukaryotes - 115 (source: NCBI BLink).  protein_id AT3G06910.1p  transcript_id AT3G06910.1  protein_id AT3G06910.1p  transcript_id AT3G06910.1  
At3g06920	chr3:002181717	0.0	W/2181717-2181741,2181859-2184449	AT3G06920.1  CDS  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: fruit; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: PGR3 (PROTON GRADIENT REGULATION 3) (TAIR:AT4G31850.1); Has 33744 Blast hits to 6404 proteins in 209 species: Archae - 9; Bacteria - 64; Metazoa - 1040; Fungi - 902; Plants - 29759; Viruses - 0; Other Eukaryotes - 1970 (source: NCBI BLink).  protein_id AT3G06920.1p  transcript_id AT3G06920.1  protein_id AT3G06920.1p  transcript_id AT3G06920.1  
At3g06930	chr3:002189102	0.0	C/2189102-2189296,2188725-2188787,2188498-2188600,2188092-2188235,2187833-2187936,2187377-2187475,2187222-2187291,2186948-2187044,2186815-2186869,2186607-2186690,2186395-2186472,2186174-2186277,2185895-2186067,2185631-2185788,2185469-2185546	AT3G06930.1  CDS  gene_syn ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4B, ATPRMT4B, PRMT4B, PROTEIN ARGININE METHYLTRANSFERASE 4B  gene PRMT4B  function Encodes an type I protein arginine methyltransferase. PRMT4b can catalyze the asymmetric dimethylation of arginines 2,17, and 26 on histone 3 and can also methylate myelin basic protein in vitro. Double mutants lacking PRMT4a and 4b have reduced levels of histone 3 methylated at R17. These double mutants flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts.  go_component nucleus|GO:0005634|18660432|IDA  go_component cytoplasm|GO:0005737|18660432|IDA  go_process regulation of flower development|GO:0009909|18660432|IGI  go_process vegetative to reproductive phase transition|GO:0010228|18660432|IGI  go_process peptidyl-arginine methylation, to asymmetrical-dimethyl arginine|GO:0019919|18660432|IDA  go_process histone H3-R2 methylation|GO:0034970|18660432|IDA  go_process histone H3-R17 methylation|GO:0034971|18660432|IGI  go_process histone H3-R26 methylation|GO:0034972|18660432|IDA  go_function methyltransferase activity|GO:0008168||ISS  go_function histone-arginine N-methyltransferase activity|GO:0008469|18660432|IDA  go_function [myelin basic protein]-arginine N-methyltransferase activity|GO:0016277|18660432|IDA  go_function protein-arginine omega-N monomethyltransferase activity|GO:0035241|18660432|IDA  go_function protein-arginine omega-N asymmetric methyltransferase activity|GO:0035242|18660432|IDA  go_function protein homodimerization activity|GO:0042803|18660432|IPI  go_function protein heterodimerization activity|GO:0046982|18660432|IPI  product protein arginine N-methyltransferase family protein  note PROTEIN ARGININE METHYLTRANSFERASE 4B (PRMT4B); FUNCTIONS IN: in 7 functions; INVOLVED IN: in 6 processes; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: PRMT4A (PROTEIN ARGININE METHYLTRANSFERASE 4A); [myelin basic protein]-arginine N-methyltransferase/ histone-arginine N-methyltransferase/ methyltransferase/ protein heterodimerization/ protein homodimerization/ protein-arginine omega-N asymmetric methyltransferase/ protein-arginine omega-N monomethyltransferase (TAIR:AT5G49020.1); Has 1900 Blast hits to 1882 proteins in 358 species: Archae - 30; Bacteria - 297; Metazoa - 991; Fungi - 166; Plants - 173; Viruses - 0; Other Eukaryotes - 243 (source: NCBI BLink).  protein_id AT3G06930.1p  transcript_id AT3G06930.1  protein_id AT3G06930.1p  transcript_id AT3G06930.1  
At3g06930	chr3:002189102	0.0	C/2189102-2189296,2188725-2188787,2188498-2188600,2188092-2188235,2187833-2187936,2187377-2187475,2187222-2187291,2186948-2187044,2186815-2186869,2186607-2186690,2186395-2186472,2186174-2186277,2185895-2186067,2185631-2185788,2185469-2185549	AT3G06930.2  CDS  gene_syn ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4B, ATPRMT4B, PRMT4B, PROTEIN ARGININE METHYLTRANSFERASE 4B  gene PRMT4B  function Encodes an type I protein arginine methyltransferase. PRMT4b can catalyze the asymmetric dimethylation of arginines 2,17, and 26 on histone 3 and can also methylate myelin basic protein in vitro. Double mutants lacking PRMT4a and 4b have reduced levels of histone 3 methylated at R17. These double mutants flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts.  go_component nucleus|GO:0005634|18660432|IDA  go_component cytoplasm|GO:0005737|18660432|IDA  go_process regulation of flower development|GO:0009909|18660432|IGI  go_process vegetative to reproductive phase transition|GO:0010228|18660432|IGI  go_process peptidyl-arginine methylation, to asymmetrical-dimethyl arginine|GO:0019919|18660432|IDA  go_process histone H3-R2 methylation|GO:0034970|18660432|IDA  go_process histone H3-R17 methylation|GO:0034971|18660432|IGI  go_process histone H3-R26 methylation|GO:0034972|18660432|IDA  go_function methyltransferase activity|GO:0008168||ISS  go_function histone-arginine N-methyltransferase activity|GO:0008469|18660432|IDA  go_function [myelin basic protein]-arginine N-methyltransferase activity|GO:0016277|18660432|IDA  go_function protein-arginine omega-N monomethyltransferase activity|GO:0035241|18660432|IDA  go_function protein-arginine omega-N asymmetric methyltransferase activity|GO:0035242|18660432|IDA  go_function protein homodimerization activity|GO:0042803|18660432|IPI  go_function protein heterodimerization activity|GO:0046982|18660432|IPI  product protein arginine N-methyltransferase family protein  note PROTEIN ARGININE METHYLTRANSFERASE 4B (PRMT4B); FUNCTIONS IN: in 7 functions; INVOLVED IN: in 6 processes; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: PRMT4A (PROTEIN ARGININE METHYLTRANSFERASE 4A); [myelin basic protein]-arginine N-methyltransferase/ histone-arginine N-methyltransferase/ methyltransferase/ protein heterodimerization/ protein homodimerization/ protein-arginine omega-N asymmetric methyltransferase/ protein-arginine omega-N monomethyltransferase (TAIR:AT5G49020.1); Has 1900 Blast hits to 1882 proteins in 358 species: Archae - 30; Bacteria - 297; Metazoa - 991; Fungi - 166; Plants - 173; Viruses - 0; Other Eukaryotes - 243 (source: NCBI BLink).  protein_id AT3G06930.2p  transcript_id AT3G06930.2  protein_id AT3G06930.2p  transcript_id AT3G06930.2  
At3g06940	chr3:002189479	0.0	C/2189479-2192622	AT3G06940.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 1.1e-42 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At3g06950	chr3:002192869	0.0	W/2192869-2192943,2193043-2193133,2193223-2193362,2193433-2193795,2193874-2193936,2194015-2194254	AT3G06950.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process pseudouridine synthesis|GO:0001522||IEA  go_process tRNA processing|GO:0008033||IEA  go_function pseudouridine synthase activity|GO:0009982|18599582|TAS  go_function pseudouridine synthase activity|GO:0009982||ISS  product tRNA pseudouridine synthase family protein  note tRNA pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: tRNA processing, pseudouridine synthesis; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA pseudouridine synthase (InterPro:IPR001406); BEST Arabidopsis thaliana protein match is: tRNA pseudouridine synthase family protein (TAIR:AT1G34150.1); Has 6144 Blast hits to 6136 proteins in 1570 species: Archae - 113; Bacteria - 2971; Metazoa - 267; Fungi - 167; Plants - 77; Viruses - 0; Other Eukaryotes - 2549 (source: NCBI BLink).  protein_id AT3G06950.1p  transcript_id AT3G06950.1  protein_id AT3G06950.1p  transcript_id AT3G06950.1  
At3g06960	chr3:002196221	0.0	C/2196221-2196504,2195863-2196127,2195216-2195692	AT3G06960.2  CDS  gene_syn PDE320, PIGMENT DEFECTIVE 320, TGD4, TRIGALACTOSYLDIACYLGLYCEROL 4  gene PDE320  go_component chloroplast|GO:0009507|18431481|IDA  go_component endoplasmic reticulum|GO:0005783|18689504|IDA  go_process acylglycerol transport|GO:0034196|18689504|IMP  go_function molecular_function|GO:0003674||ND  product PDE320 (PIGMENT DEFECTIVE 320)  note PIGMENT DEFECTIVE 320 (PDE320); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: acylglycerol transport; LOCATED IN: endoplasmic reticulum, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G44640.1); Has 22 Blast hits to 22 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G06960.2p  transcript_id AT3G06960.2  protein_id AT3G06960.2p  transcript_id AT3G06960.2  
At3g06960	chr3:002196221	0.0	C/2196221-2196504,2195863-2196127,2195338-2195692,2194686-2195023,2194379-2194576	AT3G06960.1  CDS  gene_syn PDE320, PIGMENT DEFECTIVE 320, TGD4, TRIGALACTOSYLDIACYLGLYCEROL 4  gene PDE320  go_component chloroplast|GO:0009507|18431481|IDA  go_component endoplasmic reticulum|GO:0005783|18689504|IDA  go_process acylglycerol transport|GO:0034196|18689504|IMP  go_function molecular_function|GO:0003674||ND  product PDE320 (PIGMENT DEFECTIVE 320)  note PIGMENT DEFECTIVE 320 (PDE320); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: acylglycerol transport; LOCATED IN: endoplasmic reticulum, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G44640.1); Has 24 Blast hits to 23 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G06960.1p  transcript_id AT3G06960.1  protein_id AT3G06960.1p  transcript_id AT3G06960.1  
At3g06962	chr3:002197123	0.0	W/2197123-2197332	AT3G06962.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G06962.1  
At3g06970	chr3:002200980	0.0	C/2200980-2201150,2200675-2200807,2200486-2200567,2200324-2200393,2199913-2200233,2199653-2199829	AT3G06970.1  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA binding / nucleic acid binding / nucleotide binding  note RNA binding / nucleic acid binding / nucleotide binding; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT2G46780.1); Has 9251 Blast hits to 7450 proteins in 415 species: Archae - 0; Bacteria - 427; Metazoa - 5340; Fungi - 835; Plants - 1724; Viruses - 18; Other Eukaryotes - 907 (source: NCBI BLink).  protein_id AT3G06970.1p  transcript_id AT3G06970.1  protein_id AT3G06970.1p  transcript_id AT3G06970.1  
At3g06980	chr3:002201531	0.0	W/2201531-2201792,2201925-2202865,2202969-2203163,2203273-2203460,2203577-2203790,2203924-2204055,2204143-2204318,2204425-2204662	AT3G06980.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_process biological_process|GO:0008150||ND  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD/DEAH box helicase, putative  note DEAD/DEAH box helicase, putative; FUNCTIONS IN: helicase activity, ATP binding, nucleic acid binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (TAIR:AT4G09730.1); Has 24666 Blast hits to 24212 proteins in 1703 species: Archae - 323; Bacteria - 9423; Metazoa - 4995; Fungi - 3095; Plants - 1312; Viruses - 15; Other Eukaryotes - 5503 (source: NCBI BLink).  protein_id AT3G06980.1p  transcript_id AT3G06980.1  protein_id AT3G06980.1p  transcript_id AT3G06980.1  
At3g06985	chr3:002205392	0.0	W/2205392-2205464,2205567-2205706	AT3G06985.1  CDS  gene_syn LCR44, Low-molecular-weight cysteine-rich 44  gene LCR44  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR44 (Low-molecular-weight cysteine-rich 44)  note Low-molecular-weight cysteine-rich 44 (LCR44); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: LCR43 (Low-molecular-weight cysteine-rich 43) (TAIR:AT3G07005.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G06985.1p  transcript_id AT3G06985.1  protein_id AT3G06985.1p  transcript_id AT3G06985.1  
At3g06990	chr3:002206387	0.0	W/2206387-2206849,2206902-2208058	AT3G06990.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT3G07000.1); Has 1011 Blast hits to 462 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1004; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G06990.1p  transcript_id AT3G06990.1  protein_id AT3G06990.1p  transcript_id AT3G06990.1  
At3g06995	chr3:002208722	0.0	W/2208722-2208877	AT3G06995.1  pseudogenic_transcript  pseudo  function Encodes a Defensin-like (DEFL) family protein [pseudogene]  
At3g07000	chr3:002209503	0.0	W/2209503-2211227	AT3G07000.1  CDS  go_process intracellular signaling cascade|GO:0007242||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular signaling cascade; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT3G06990.1); Has 1126 Blast hits to 497 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 1098; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT3G07000.1p  transcript_id AT3G07000.1  protein_id AT3G07000.1p  transcript_id AT3G07000.1  
At3g07005	chr3:002212063	0.0	W/2212063-2212132,2212247-2212413	AT3G07005.1  CDS  gene_syn LCR43, Low-molecular-weight cysteine-rich 43  gene LCR43  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR43 (Low-molecular-weight cysteine-rich 43)  note Low-molecular-weight cysteine-rich 43 (LCR43); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: LCR44 (Low-molecular-weight cysteine-rich 44) (TAIR:AT3G06985.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G07005.1p  transcript_id AT3G07005.1  protein_id AT3G07005.1p  transcript_id AT3G07005.1  
At3g07010	chr3:002216230	0.0	C/2216230-2216306,2215906-2215971,2213735-2214377,2213549-2213652,2213318-2213456,2212973-2213194	AT3G07010.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function lyase activity|GO:0016829||ISS  go_function pectate lyase activity|GO:0030570||ISS  product pectate lyase family protein  note pectate lyase family protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectate lyase family protein (TAIR:AT5G48900.1); Has 902 Blast hits to 897 proteins in 157 species: Archae - 0; Bacteria - 370; Metazoa - 0; Fungi - 126; Plants - 399; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT3G07010.1p  transcript_id AT3G07010.1  protein_id AT3G07010.1p  transcript_id AT3G07010.1  
At3g07020	chr3:002221380	0.0	C/2221380-2221590,2221084-2221280,2220654-2220896,2220462-2220573,2220181-2220351,2219947-2220010,2219771-2219828,2219504-2219681,2219291-2219421,2219058-2219160,2218891-2218967,2218687-2218734,2218442-2218591,2218120-2218290	AT3G07020.2  CDS  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process metabolic process|GO:0008152||IEA  go_process lipid glycosylation|GO:0030259||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glucose:sterol glucosyltransferase (UGT80A2)  note UDP-glucose:sterol glucosyltransferase (UGT80A2); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: lipid glycosylation, carbohydrate metabolic process, metabolic process; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 28 (InterPro:IPR004276), UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucose:sterol glucosyltransferase, putative (TAIR:AT1G43620.3); Has 1535 Blast hits to 1509 proteins in 402 species: Archae - 0; Bacteria - 841; Metazoa - 296; Fungi - 260; Plants - 77; Viruses - 3; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT3G07020.2p  transcript_id AT3G07020.2  protein_id AT3G07020.2p  transcript_id AT3G07020.2  
At3g07020	chr3:002221380	0.0	C/2221380-2221590,2221084-2221280,2220654-2220896,2220462-2220573,2220181-2220351,2219947-2220010,2219771-2219828,2219504-2219681,2219291-2219421,2219058-2219160,2218891-2218967,2218687-2218734,2218442-2218591,2218128-2218290,2217841-2217848	AT3G07020.1  CDS  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process metabolic process|GO:0008152||IEA  go_process lipid glycosylation|GO:0030259||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glucose:sterol glucosyltransferase (UGT80A2)  note UDP-glucose:sterol glucosyltransferase (UGT80A2); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: lipid glycosylation, carbohydrate metabolic process, metabolic process; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 28 (InterPro:IPR004276), UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucose:sterol glucosyltransferase, putative (TAIR:AT1G43620.3); Has 1535 Blast hits to 1509 proteins in 402 species: Archae - 0; Bacteria - 841; Metazoa - 296; Fungi - 260; Plants - 77; Viruses - 3; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT3G07020.1p  transcript_id AT3G07020.1  protein_id AT3G07020.1p  transcript_id AT3G07020.1  
At3g07025	chr3:002222246	0.0	W/2222246-2222318	AT3G07025.1  tRNA  gene_syn 60280.TRNA-VAL-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Val (anticodon: TAC)  transcript_id AT3G07025.1  
At3g07030	chr3:002225132	0.0	C/2225132-2225254,2224754-2224834,2224575-2224663,2224426-2224500,2224143-2224237,2223938-2224044,2223766-2223834,2223001-2223579	AT3G07030.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alba, DNA/RNA-binding protein (InterPro:IPR002775); BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT1G76010.1).  protein_id AT3G07030.1p  transcript_id AT3G07030.1  protein_id AT3G07030.1p  transcript_id AT3G07030.1  
At3g07040	chr3:002226244	0.0	C/2226244-2229024	AT3G07040.1  CDS  gene_syn DISEASE RESISTANCE PROTEIN RPM1, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RPM1, RPS3  gene RPM1  function Contains an N-terminal tripartite nucleotide binding site and a C-terminal tandem array of leucine-rich repeats. Confers resistance to Pseudomonas syringae strains that carry the avirulence genes avrB and avrRpm1.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|9861059|IDA  go_process defense response|GO:0006952|7638602|TAS  go_process defense response|GO:0006952||ISS  go_process plant-type hypersensitive response|GO:0009626|8768370|IDA  go_function nucleotide binding|GO:0000166|7638602|ISS  go_function protein binding|GO:0005515|11955429|IPI  go_function protein binding|GO:0005515|12062092|IPI  go_function protein binding|GO:0005515|15722472|IPI  go_function protein binding|GO:0005515|16212605|IPI  product RPM1 (RESISTANCE TO P. SYRINGAE PV MACULICOLA 1); nucleotide binding / protein binding  note RESISTANCE TO P. SYRINGAE PV MACULICOLA 1 (RPM1); FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: plant-type hypersensitive response, defense response; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT5G35450.1); Has 14510 Blast hits to 11812 proteins in 454 species: Archae - 16; Bacteria - 1034; Metazoa - 3641; Fungi - 169; Plants - 9241; Viruses - 4; Other Eukaryotes - 405 (source: NCBI BLink).  protein_id AT3G07040.1p  transcript_id AT3G07040.1  protein_id AT3G07040.1p  transcript_id AT3G07040.1  
At3g07050	chr3:002232261	0.0	C/2232261-2232279,2231893-2232137,2231575-2231668,2231319-2231492,2231006-2231220,2230647-2230911,2230355-2230534,2230042-2230253,2229602-2229946	AT3G07050.1  CDS  go_component nucleolus|GO:0005730|15496452|IDA  go_function GTP binding|GO:0005525||IEA  go_process biological_process|GO:0008150||ND  go_function GTP binding|GO:0005525||ISS  product GTP-binding family protein  note GTP-binding family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding (InterPro:IPR005289), Small GTP-binding protein (InterPro:IPR005225), GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917), GNL3L/Grn1 putative GTPase (InterPro:IPR014813); BEST Arabidopsis thaliana protein match is: GTP-binding family protein (TAIR:AT1G52980.1); Has 8737 Blast hits to 6941 proteins in 1045 species: Archae - 97; Bacteria - 2936; Metazoa - 2440; Fungi - 644; Plants - 338; Viruses - 29; Other Eukaryotes - 2253 (source: NCBI BLink).  protein_id AT3G07050.1p  transcript_id AT3G07050.1  protein_id AT3G07050.1p  transcript_id AT3G07050.1  
At3g07055	chr3:002232465	0.0	C/2232465-2232500	AT3G07055.1  tRNA  gene_syn 60280.TRNA-MET-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Met (anticodon: CAT)  transcript_id AT3G07055.1  
At3g07060	chr3:002232760	0.0	W/2232760-2232820,2232920-2233040,2233122-2233234,2233327-2233474,2233562-2233700,2233821-2233914,2234114-2234254,2234409-2234509,2234658-2234771,2234889-2235127,2235243-2235301,2235393-2235578,2235660-2235783,2235883-2235941,2236114-2236259,2236339-2236515,2236611-2236913	AT3G07060.1  CDS  gene_syn emb1974, embryo defective 1974  gene emb1974  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product emb1974 (embryo defective 1974)  note embryo defective 1974 (emb1974); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: NHL repeat (InterPro:IPR001258), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: haloacid dehalogenase-like hydrolase family protein (TAIR:AT1G56500.1); Has 252 Blast hits to 241 proteins in 92 species: Archae - 6; Bacteria - 78; Metazoa - 105; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT3G07060.1p  transcript_id AT3G07060.1  protein_id AT3G07060.1p  transcript_id AT3G07060.1  
At3g07070	chr3:002238455	0.0	W/2238455-2238572,2238668-2238858,2238977-2239166,2239247-2239638,2239721-2240074	AT3G07070.1  CDS  gene_syn F17A9.25  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT3G24790.1); Has 84705 Blast hits to 83669 proteins in 3054 species: Archae - 48; Bacteria - 7492; Metazoa - 37667; Fungi - 6513; Plants - 18574; Viruses - 323; Other Eukaryotes - 14088 (source: NCBI BLink).  protein_id AT3G07070.1p  transcript_id AT3G07070.1  protein_id AT3G07070.1p  transcript_id AT3G07070.1  
At3g07080	chr3:002241360	0.0	W/2241360-2241932,2242027-2242447,2242612-2242934	AT3G07080.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product membrane protein  note membrane protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32140.1); Has 2281 Blast hits to 2279 proteins in 403 species: Archae - 34; Bacteria - 684; Metazoa - 306; Fungi - 191; Plants - 107; Viruses - 0; Other Eukaryotes - 959 (source: NCBI BLink).  protein_id AT3G07080.1p  transcript_id AT3G07080.1  protein_id AT3G07080.1p  transcript_id AT3G07080.1  
At3g07090	chr3:002244468	0.0	C/2244468-2244476,2244277-2244374,2243615-2243931,2243153-2243526	AT3G07090.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25170.1); Has 596 Blast hits to 596 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 201; Fungi - 84; Plants - 173; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).  protein_id AT3G07090.1p  transcript_id AT3G07090.1  protein_id AT3G07090.1p  transcript_id AT3G07090.1  
At3g07100	chr3:002249013	0.0	C/2249013-2250077,2248769-2248907,2248455-2248645,2248119-2248226,2247829-2248032,2247474-2247705,2247214-2247363,2246954-2247110,2246737-2246864,2246345-2246667,2246071-2246259,2245689-2245919	AT3G07100.1  CDS  go_component COPII vesicle coat|GO:0030127||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process ER to Golgi vesicle-mediated transport|GO:0006888||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product protein transport protein Sec24, putative  note protein transport protein Sec24, putative; FUNCTIONS IN: protein binding, transporter activity, zinc ion binding; INVOLVED IN: intracellular protein transport, transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24 helical region (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24 trunk region (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin region (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: CEF (clone eighty-four); protein binding / transporter/ zinc ion binding (TAIR:AT3G44340.1); Has 74720 Blast hits to 37673 proteins in 1279 species: Archae - 56; Bacteria - 8492; Metazoa - 38339; Fungi - 10824; Plants - 6948; Viruses - 1820; Other Eukaryotes - 8241 (source: NCBI BLink).  protein_id AT3G07100.1p  transcript_id AT3G07100.1  protein_id AT3G07100.1p  transcript_id AT3G07100.1  
At3g07110	chr3:002252092	0.0	W/2252092-2252363,2252625-2252741,2252845-2252932,2253186-2253332	AT3G07110.2  CDS  go_component nucleolus|GO:0005730|15496452|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L13A (RPL13aA)  note 60S ribosomal protein L13A (RPL13aA); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, nucleolus, large ribosomal subunit, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13 (InterPro:IPR005822), Ribosomal protein L13, eukaryotic/archaeal (InterPro:IPR005755); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L13A (RPL13aD) (TAIR:AT5G48760.2); Has 1890 Blast hits to 1890 proteins in 584 species: Archae - 212; Bacteria - 573; Metazoa - 292; Fungi - 125; Plants - 164; Viruses - 0; Other Eukaryotes - 524 (source: NCBI BLink).  protein_id AT3G07110.2p  transcript_id AT3G07110.2  protein_id AT3G07110.2p  transcript_id AT3G07110.2  
At3g07110	chr3:002252092	0.0	W/2252092-2252363,2252625-2252741,2252845-2252932,2253189-2253332	AT3G07110.1  CDS  go_component nucleolus|GO:0005730|15496452|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L13A (RPL13aA)  note 60S ribosomal protein L13A (RPL13aA); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13 (InterPro:IPR005822), Ribosomal protein L13, eukaryotic/archaeal (InterPro:IPR005755); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L13A (RPL13aD) (TAIR:AT5G48760.2); Has 1890 Blast hits to 1890 proteins in 584 species: Archae - 212; Bacteria - 573; Metazoa - 292; Fungi - 125; Plants - 164; Viruses - 0; Other Eukaryotes - 524 (source: NCBI BLink).  protein_id AT3G07110.1p  transcript_id AT3G07110.1  protein_id AT3G07110.1p  transcript_id AT3G07110.1  
At3g07115	chr3:002253675	0.0	C/2253675-2253756	AT3G07115.1  tRNA  gene_syn 60248.TRNA-SER-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: TGA)  transcript_id AT3G07115.1  
At3g07120	chr3:002254560	0.0	W/2254560-2255642	AT3G07120.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G13100.3); Has 5012 Blast hits to 3686 proteins in 276 species: Archae - 4; Bacteria - 103; Metazoa - 2735; Fungi - 685; Plants - 337; Viruses - 120; Other Eukaryotes - 1028 (source: NCBI BLink).  protein_id AT3G07120.1p  transcript_id AT3G07120.1  protein_id AT3G07120.1p  transcript_id AT3G07120.1  
At3g07130	chr3:002257729	0.0	C/2257729-2257981,2257260-2257451,2256627-2257178,2256356-2256546,2255981-2256256,2255763-2255897	AT3G07130.1  CDS  gene_syn ATPAP15, PAP15, PURPLE ACID PHOSPHATASE 15  gene PAP15  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function acid phosphatase activity|GO:0003993|16244908|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PAP15 (PURPLE ACID PHOSPHATASE 15); acid phosphatase/ protein serine/threonine phosphatase  note PURPLE ACID PHOSPHATASE 15 (PAP15); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Purple acid phosphatase, N-terminal (InterPro:IPR015914), Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: purple acid phosphatase (PAP13) (TAIR:AT2G32770.3); Has 1458 Blast hits to 1447 proteins in 302 species: Archae - 5; Bacteria - 500; Metazoa - 205; Fungi - 58; Plants - 434; Viruses - 0; Other Eukaryotes - 256 (source: NCBI BLink).  protein_id AT3G07130.1p  transcript_id AT3G07130.1  protein_id AT3G07130.1p  transcript_id AT3G07130.1  
At3g07140	chr3:002261278	0.0	W/2261278-2261502,2261612-2262808,2262918-2263061,2263160-2263340,2263445-2263632	AT3G07140.1  CDS  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function GPI-anchor transamidase activity|GO:0003923||ISS  product GPI transamidase component Gpi16 subunit family protein  note GPI transamidase component Gpi16 subunit family protein; FUNCTIONS IN: GPI-anchor transamidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gpi16 subunit, GPI transamidase component (InterPro:IPR007245); Has 252 Blast hits to 238 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 141; Fungi - 88; Plants - 15; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT3G07140.1p  transcript_id AT3G07140.1  protein_id AT3G07140.1p  transcript_id AT3G07140.1  
At3g07140	chr3:002261278	0.0	W/2261278-2261502,2261612-2262808,2262918-2263061,2263160-2263340,2263448-2263632	AT3G07140.2  CDS  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function GPI-anchor transamidase activity|GO:0003923||ISS  product GPI transamidase component Gpi16 subunit family protein  note GPI transamidase component Gpi16 subunit family protein; FUNCTIONS IN: GPI-anchor transamidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gpi16 subunit, GPI transamidase component (InterPro:IPR007245); Has 252 Blast hits to 238 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 141; Fungi - 88; Plants - 15; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT3G07140.2p  transcript_id AT3G07140.2  protein_id AT3G07140.2p  transcript_id AT3G07140.2  
At3g07150	chr3:002264273	0.0	C/2264273-2264576,2264097-2264180,2263806-2264017	AT3G07150.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G07150.1p  transcript_id AT3G07150.1  protein_id AT3G07150.1p  transcript_id AT3G07150.1  
At3g07160	chr3:002279185	0.0	C/2279185-2279383,2278985-2279082,2278543-2278697,2278318-2278414,2278057-2278167,2277855-2277980,2277665-2277754,2277294-2277391,2277098-2277215,2276794-2276937,2276216-2276292,2276066-2276144,2275559-2275675,2275207-2275312,2274997-2275120,2274699-2274879,2274555-2274607,2274379-2274453,2274240-2274300,2273803-2273884,2273408-2273457,2273089-2273175,2272878-2272963,2272723-2272752,2272454-2272621,2272261-2272342,2271966-2272123,2271767-2271887,2271431-2271528,2271241-2271331,2270999-2271159,2270808-2270917,2270533-2270664,2270139-2270358,2269898-2270012,2269580-2269699,2268701-2268816,2268539-2268622,2268343-2268455,2268130-2268182,2267885-2268061,2267550-2267597,2267260-2267418,2266739-2266852,2266577-2266665,2266306-2266464,2266120-2266222,2265911-2266030,2265763-2265813,2265476-2265658,2265142-2265378	AT3G07160.1  CDS  gene_syn ATGSL10, glucan synthase-like 10, gsl10  gene ATGSL10  function Encodes GSL10, a member of the Glucan Synthase-Like (GSL) family believed to be involved in the synthesis of the cell wall component callose. GSL10 is required for male gametophyte development and plant growth. Has a role in entry of microspores into mitosis. GSL10 mutation leads to perturbation of microspore division symmetry, irregular callose deposition and failure of generative cell engulfment by the vegetative cell cytoplasm. Also refer to GSL8 (At2g36850).  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component 1,3-beta-glucan synthase complex|GO:0000148||ISS  go_component plasma membrane|GO:0005886|16618929|IDA  go_process 1,3-beta-glucan biosynthetic process|GO:0006075||ISS  go_process pollen development|GO:0009555|18315544|IMP  go_process microsporogenesis|GO:0009556|18315544|IMP  go_process developmental growth|GO:0048589|18315544|IMP  go_process callose deposition in cell wall|GO:0052543|18315544|IMP  go_function 1,3-beta-glucan synthase activity|GO:0003843||ISS  product ATGSL10 (glucan synthase-like 10); 1,3-beta-glucan synthase  note glucan synthase-like 10 (ATGSL10); FUNCTIONS IN: 1,3-beta-glucan synthase activity; INVOLVED IN: callose deposition in cell wall, microsporogenesis, developmental growth, pollen development, 1,3-beta-glucan biosynthetic process; LOCATED IN: 1,3-beta-glucan synthase complex, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 48 (InterPro:IPR003440); BEST Arabidopsis thaliana protein match is: GSL8 (GLUCAN SYNTHASE-LIKE 8); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups (TAIR:AT2G36850.1); Has 818 Blast hits to 590 proteins in 100 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 534; Plants - 255; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT3G07160.1p  transcript_id AT3G07160.1  protein_id AT3G07160.1p  transcript_id AT3G07160.1  
At3g07170	chr3:002280428	0.0	W/2280428-2280540,2281061-2281122,2281221-2281474,2281648-2281722,2281811-2281873,2282053-2282097	AT3G07170.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product sterile alpha motif (SAM) domain-containing protein  note sterile alpha motif (SAM) domain-containing protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sterile alpha motif SAM (InterPro:IPR001660), Sterile alpha motif homology (InterPro:IPR010993); BEST Arabidopsis thaliana protein match is: sterile alpha motif (SAM) domain-containing protein (TAIR:AT5G48680.1); Has 396 Blast hits to 395 proteins in 57 species: Archae - 0; Bacteria - 4; Metazoa - 293; Fungi - 2; Plants - 89; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT3G07170.1p  transcript_id AT3G07170.1  protein_id AT3G07170.1p  transcript_id AT3G07170.1  
At3g07180	chr3:002285346	0.0	C/2285346-2285475,2284558-2285254,2284354-2284438,2284183-2284272,2284026-2284099,2283805-2283889,2283643-2283726,2283341-2283471,2283132-2283213,2283002-2283049,2282852-2282924,2282656-2282759,2282455-2282571	AT3G07180.1  CDS  go_component plasma membrane|GO:0005886|17151019|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product GPI transamidase component PIG-S-related  note GPI transamidase component PIG-S-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 9 growth stages; Has 218 Blast hits to 216 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 81; Plants - 21; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G07180.1p  transcript_id AT3G07180.1  protein_id AT3G07180.1p  transcript_id AT3G07180.1  
At3g07180	chr3:002285346	0.0	C/2285346-2285475,2284558-2285254,2284354-2284438,2284183-2284272,2284031-2284099,2282852-2282924,2282656-2282759,2282455-2282571	AT3G07180.2  CDS  go_component plasma membrane|GO:0005886|17151019|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product GPI transamidase component PIG-S-related  note GPI transamidase component PIG-S-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 9 growth stages; Has 263 Blast hits to 163 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 137; Fungi - 91; Plants - 31; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G07180.2p  transcript_id AT3G07180.2  protein_id AT3G07180.2p  transcript_id AT3G07180.2  
At3g07185	chr3:002285602	0.0	W/2285602-2285673	AT3G07185.1  tRNA  gene_syn 60248.TRNA-LYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Lys (anticodon: TTT)  transcript_id AT3G07185.1  
At3g07190	chr3:002286870	0.0	C/2286870-2287155,2285979-2286355	AT3G07190.1  CDS  go_component endoplasmic reticulum|GO:0005783||IEA  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, integral to membrane, endoplasmic reticulum; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: B-cell receptor-associated 31-like (InterPro:IPR008417); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48660.1); Has 1605 Blast hits to 1370 proteins in 245 species: Archae - 60; Bacteria - 207; Metazoa - 536; Fungi - 109; Plants - 162; Viruses - 29; Other Eukaryotes - 502 (source: NCBI BLink).  protein_id AT3G07190.1p  transcript_id AT3G07190.1  protein_id AT3G07190.1p  transcript_id AT3G07190.1  
At3g07195	chr3:002288959	0.0	W/2288959-2288964,2289392-2289826,2289978-2290172,2290268-2290309	AT3G07195.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product proline-rich family protein  note proline-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: defense protein-related (TAIR:AT5G48657.2); Has 4353 Blast hits to 3535 proteins in 378 species: Archae - 6; Bacteria - 1484; Metazoa - 1568; Fungi - 266; Plants - 491; Viruses - 21; Other Eukaryotes - 517 (source: NCBI BLink).  protein_id AT3G07195.1p  transcript_id AT3G07195.1  protein_id AT3G07195.1p  transcript_id AT3G07195.1  
At3g07200	chr3:002291343	0.0	W/2291343-2291543,2291639-2291696,2291847-2291917,2292005-2292223	AT3G07200.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G48655.3); Has 4419 Blast hits to 4404 proteins in 583 species: Archae - 0; Bacteria - 0; Metazoa - 3082; Fungi - 473; Plants - 291; Viruses - 27; Other Eukaryotes - 546 (source: NCBI BLink).  protein_id AT3G07200.1p  transcript_id AT3G07200.1  protein_id AT3G07200.1p  transcript_id AT3G07200.1  
At3g07200	chr3:002291343	0.0	W/2291343-2291543,2291639-2291696,2291847-2291917,2292005-2292223	AT3G07200.2  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G48655.3); Has 4419 Blast hits to 4404 proteins in 583 species: Archae - 0; Bacteria - 0; Metazoa - 3082; Fungi - 473; Plants - 291; Viruses - 27; Other Eukaryotes - 546 (source: NCBI BLink).  protein_id AT3G07200.2p  transcript_id AT3G07200.2  protein_id AT3G07200.2p  transcript_id AT3G07200.2  
At3g07210	chr3:002294857	0.0	C/2294857-2295119,2293000-2294380	AT3G07210.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; Has 61 Blast hits to 51 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 9; Fungi - 15; Plants - 15; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT3G07210.1p  transcript_id AT3G07210.1  protein_id AT3G07210.1p  transcript_id AT3G07210.1  
At3g07215	chr3:002296157	0.0	C/2296157-2297734	AT3G07215.3  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G07215.3  
At3g07215	chr3:002296158	0.0	C/2296158-2297751	AT3G07215.2  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G07215.2  
At3g07215	chr3:002296164	0.0	C/2296164-2297729	AT3G07215.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G07215.1  
At3g07220	chr3:002297968	0.0	W/2297968-2298562,2298760-2298917,2299198-2299407	AT3G07220.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transcription activator activity|GO:0016563||ISS  product transcriptional activator, putative  note transcriptional activator, putative; FUNCTIONS IN: transcription activator activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: forkhead-associated domain-containing protein / FHA domain-containing protein (TAIR:AT3G07260.1); Has 336 Blast hits to 335 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 131; Plants - 59; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT3G07220.1p  transcript_id AT3G07220.1  protein_id AT3G07220.1p  transcript_id AT3G07220.1  
At3g07230	chr3:002299920	0.0	W/2299920-2299990,2300114-2300183	AT3G07230.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product wound-responsive protein-related  note wound-responsive protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Wound-inducible basic (InterPro:IPR012643); Has 20 Blast hits to 20 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G07230.1p  transcript_id AT3G07230.1  protein_id AT3G07230.1p  transcript_id AT3G07230.1  
At3g07250	chr3:002307873	0.0	C/2307873-2308305,2307310-2307716,2306228-2306362,2305896-2306148,2305588-2305805,2305429-2305494,2305286-2305349,2305142-2305198,2304922-2305055,2304780-2304839,2304586-2304649,2304159-2304500,2303969-2304078,2303809-2303868,2303598-2303715,2303190-2303516,2302180-2302295,2301845-2302106,2301633-2301745,2301499-2301558,2301341-2301404,2301135-2301248,2300925-2301049,2300779-2300838,2300579-2300701	AT3G07250.1  CDS  go_component intracellular|GO:0005622||IEA  go_process transport|GO:0006810||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process nucleocytoplasmic transport|GO:0006913||ISS  go_function RNA binding|GO:0003723||ISS  product nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein  note nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: transport, nucleocytoplasmic transport; LOCATED IN: intracellular; EXPRESSED IN: flower, leaf; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Protein of unknown function DUF1675 (InterPro:IPR012463); BEST Arabidopsis thaliana protein match is: nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G25150.1); Has 5966 Blast hits to 2460 proteins in 231 species: Archae - 0; Bacteria - 56; Metazoa - 3902; Fungi - 435; Plants - 707; Viruses - 92; Other Eukaryotes - 774 (source: NCBI BLink).  protein_id AT3G07250.1p  transcript_id AT3G07250.1  protein_id AT3G07250.1p  transcript_id AT3G07250.1  
At3g07260	chr3:002309704	0.0	W/2309704-2310286,2310458-2310630	AT3G07260.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product forkhead-associated domain-containing protein / FHA domain-containing protein  note forkhead-associated domain-containing protein / FHA domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: transcriptional activator, putative (TAIR:AT3G07220.1); Has 305 Blast hits to 305 proteins in 93 species: Archae - 0; Bacteria - 2; Metazoa - 112; Fungi - 127; Plants - 55; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G07260.1p  transcript_id AT3G07260.1  protein_id AT3G07260.1p  transcript_id AT3G07260.1  
At3g07270	chr3:002314005	0.0	W/2314005-2314017,2315464-2315664,2315873-2317059	AT3G07270.2  CDS  go_component cytoplasm|GO:0005737||IEA  go_process tetrahydrofolate biosynthetic process|GO:0046654||IEA  go_function GTP cyclohydrolase I activity|GO:0003934||IEA  go_process biosynthetic process|GO:0009058||ISS  go_function GTP cyclohydrolase I activity|GO:0003934||ISS  product GTP cyclohydrolase I  note GTP cyclohydrolase I; FUNCTIONS IN: GTP cyclohydrolase I activity; INVOLVED IN: tetrahydrofolate biosynthetic process, biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GTP cyclohydrolase I (InterPro:IPR001474); Has 9830 Blast hits to 5158 proteins in 1246 species: Archae - 70; Bacteria - 5063; Metazoa - 375; Fungi - 212; Plants - 40; Viruses - 16; Other Eukaryotes - 4054 (source: NCBI BLink).  protein_id AT3G07270.2p  transcript_id AT3G07270.2  protein_id AT3G07270.2p  transcript_id AT3G07270.2  
At3g07270	chr3:002315451	0.0	W/2315451-2315664,2315873-2317059	AT3G07270.1  CDS  go_component cytoplasm|GO:0005737||IEA  go_process tetrahydrofolate biosynthetic process|GO:0046654||IEA  go_function GTP cyclohydrolase I activity|GO:0003934||IEA  go_process biosynthetic process|GO:0009058||ISS  go_function GTP cyclohydrolase I activity|GO:0003934||ISS  product GTP cyclohydrolase I  note GTP cyclohydrolase I; FUNCTIONS IN: GTP cyclohydrolase I activity; INVOLVED IN: tetrahydrofolate biosynthetic process, biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GTP cyclohydrolase I (InterPro:IPR001474); Has 9830 Blast hits to 5158 proteins in 1246 species: Archae - 70; Bacteria - 5063; Metazoa - 375; Fungi - 212; Plants - 40; Viruses - 16; Other Eukaryotes - 4054 (source: NCBI BLink).  protein_id AT3G07270.1p  transcript_id AT3G07270.1  protein_id AT3G07270.1p  transcript_id AT3G07270.1  
At3g07273	chr3:002317714	0.0	C/2317714-2317926	AT3G07273.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G07273.1p  transcript_id AT3G07273.1  protein_id AT3G07273.1p  transcript_id AT3G07273.1  
At3g07274	chr3:002317939	0.0	C/2317939-2318454	AT3G07274.1  pseudogenic_transcript  pseudo  function unknown pseudogene  
At3g07280	chr3:002318922	0.0	C/2318922-2321215	AT3G07280.1  pseudogenic_transcript  pseudo  function pseudogene of unknown protein  note expressed protein  
At3g07290	chr3:002321740	0.0	C/2321740-2324382	AT3G07290.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G65560.1); Has 24306 Blast hits to 5941 proteins in 182 species: Archae - 7; Bacteria - 26; Metazoa - 738; Fungi - 558; Plants - 21875; Viruses - 0; Other Eukaryotes - 1102 (source: NCBI BLink).  protein_id AT3G07290.1p  transcript_id AT3G07290.1  protein_id AT3G07290.1p  transcript_id AT3G07290.1  
At3g07300	chr3:002327328	0.0	C/2327328-2327380,2327095-2327249,2326719-2327012,2326091-2326220,2325860-2325967,2325620-2325722,2325415-2325540,2325147-2325334,2324967-2325039	AT3G07300.3  CDS  go_process cellular metabolic process|GO:0044237||IEA  go_component eukaryotic translation initiation factor 2B complex|GO:0005851||ISS  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  go_function GTP binding|GO:0005525||ISS  product eukaryotic translation initiation factor 2B family protein / eIF-2B family protein  note eukaryotic translation initiation factor 2B family protein / eIF-2B family protein; FUNCTIONS IN: GTP binding, translation initiation factor activity; INVOLVED IN: translational initiation, cellular metabolic process; LOCATED IN: eukaryotic translation initiation factor 2B complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor 2B related (InterPro:IPR000649); BEST Arabidopsis thaliana protein match is: GTP binding / translation initiation factor (TAIR:AT2G44070.1); Has 3102 Blast hits to 3086 proteins in 618 species: Archae - 219; Bacteria - 968; Metazoa - 478; Fungi - 332; Plants - 115; Viruses - 0; Other Eukaryotes - 990 (source: NCBI BLink).  protein_id AT3G07300.3p  transcript_id AT3G07300.3  protein_id AT3G07300.3p  transcript_id AT3G07300.3  
At3g07300	chr3:002327328	0.0	C/2327328-2327380,2327095-2327249,2326725-2327012,2326091-2326220,2325860-2325967,2325620-2325722,2325415-2325540,2325147-2325334,2324967-2325039	AT3G07300.1  CDS  go_process cellular metabolic process|GO:0044237||IEA  go_component eukaryotic translation initiation factor 2B complex|GO:0005851||ISS  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  go_function GTP binding|GO:0005525||ISS  product eukaryotic translation initiation factor 2B family protein / eIF-2B family protein  note eukaryotic translation initiation factor 2B family protein / eIF-2B family protein; FUNCTIONS IN: GTP binding, translation initiation factor activity; INVOLVED IN: translational initiation, cellular metabolic process; LOCATED IN: eukaryotic translation initiation factor 2B complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor 2B related (InterPro:IPR000649); BEST Arabidopsis thaliana protein match is: GTP binding / translation initiation factor (TAIR:AT2G44070.1); Has 3086 Blast hits to 3076 proteins in 617 species: Archae - 217; Bacteria - 962; Metazoa - 471; Fungi - 330; Plants - 115; Viruses - 0; Other Eukaryotes - 991 (source: NCBI BLink).  protein_id AT3G07300.1p  transcript_id AT3G07300.1  protein_id AT3G07300.1p  transcript_id AT3G07300.1  
At3g07300	chr3:002327328	0.0	C/2327328-2327380,2327095-2327249,2326725-2327012,2326091-2326220,2325860-2325967,2325620-2325722,2325415-2325540,2325147-2325334,2324967-2325039	AT3G07300.2  CDS  go_process cellular metabolic process|GO:0044237||IEA  go_component eukaryotic translation initiation factor 2B complex|GO:0005851||ISS  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  go_function GTP binding|GO:0005525||ISS  product eukaryotic translation initiation factor 2B family protein / eIF-2B family protein  note eukaryotic translation initiation factor 2B family protein / eIF-2B family protein; FUNCTIONS IN: GTP binding, translation initiation factor activity; INVOLVED IN: translational initiation, cellular metabolic process; LOCATED IN: eukaryotic translation initiation factor 2B complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor 2B related (InterPro:IPR000649); BEST Arabidopsis thaliana protein match is: GTP binding / translation initiation factor (TAIR:AT2G44070.1); Has 3086 Blast hits to 3076 proteins in 617 species: Archae - 217; Bacteria - 962; Metazoa - 471; Fungi - 330; Plants - 115; Viruses - 0; Other Eukaryotes - 991 (source: NCBI BLink).  protein_id AT3G07300.2p  transcript_id AT3G07300.2  protein_id AT3G07300.2p  transcript_id AT3G07300.2  
At3g07310	chr3:002329322	0.0	C/2329322-2329677,2328057-2328807	AT3G07310.1  CDS  gene_syn T1B9.2  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF760 (InterPro:IPR008479); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48590.1); Has 84 Blast hits to 82 proteins in 17 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G07310.1p  transcript_id AT3G07310.1  protein_id AT3G07310.1p  transcript_id AT3G07310.1  
At3g07320	chr3:002333874	0.0	C/2333874-2333925,2332500-2333792,2332324-2332361	AT3G07320.1  CDS  gene_syn T1B9.1  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT3G23770.1); Has 1745 Blast hits to 1692 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 1739; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G07320.1p  transcript_id AT3G07320.1  protein_id AT3G07320.1p  transcript_id AT3G07320.1  
At3g07330	chr3:002338241	0.0	C/2338241-2338942,2337673-2337981,2337096-2337386,2336882-2336995,2336121-2336753	AT3G07330.1  CDS  gene_syn ATCSLC06, ATCSLC6, CELLULOSE-SYNTHASE LIKE C6, CSLC06  gene ATCSLC6  function encodes a gene similar to cellulose synthase  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process pollen tube development|GO:0048868|19237690|IMP  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  product ATCSLC6 (CELLULOSE-SYNTHASE LIKE C6); cellulose synthase/ transferase, transferring glycosyl groups  note CELLULOSE-SYNTHASE LIKE C6 (ATCSLC6); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: pollen tube development; LOCATED IN: Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: ATCSLC5 (CELLULOSE-SYNTHASE LIKE C5); cellulose synthase/ transferase, transferring glycosyl groups (TAIR:AT4G31590.1); Has 2939 Blast hits to 2938 proteins in 811 species: Archae - 94; Bacteria - 2147; Metazoa - 9; Fungi - 73; Plants - 314; Viruses - 14; Other Eukaryotes - 288 (source: NCBI BLink).  protein_id AT3G07330.1p  transcript_id AT3G07330.1  protein_id AT3G07330.1p  transcript_id AT3G07330.1  
At3g07340	chr3:002342620	0.0	C/2342620-2343288,2342387-2342539,2342195-2342260,2342037-2342105,2341840-2341911,2341501-2341716,2341328-2341409,2341188-2341231	AT3G07340.1  CDS  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT5G48560.1); Has 1667 Blast hits to 1342 proteins in 102 species: Archae - 0; Bacteria - 2; Metazoa - 55; Fungi - 34; Plants - 1233; Viruses - 0; Other Eukaryotes - 343 (source: NCBI BLink).  protein_id AT3G07340.1p  transcript_id AT3G07340.1  protein_id AT3G07340.1p  transcript_id AT3G07340.1  
At3g07350	chr3:002347674	0.0	W/2347674-2348570	AT3G07350.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25240.1); Has 219 Blast hits to 218 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 217; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G07350.1p  transcript_id AT3G07350.1  protein_id AT3G07350.1p  transcript_id AT3G07350.1  
At3g07360	chr3:002354884	0.0	W/2354884-2355174,2355522-2356613	AT3G07360.1  CDS  gene_syn ARABIDOPSIS THALIANA PLANT U-BOX 9, ATPUB9, PLANT U-BOX 9, PUB9  gene PUB9  function Encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.  go_process protein ubiquitination|GO:0016567|14657406|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|14657406|IDA  go_component nucleus|GO:0005634|18552232|IDA  product PUB9 (PLANT U-BOX 9); ubiquitin-protein ligase  note PLANT U-BOX 9 (PUB9); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein / U-box domain-containing protein (TAIR:AT5G18320.1); Has 1871 Blast hits to 1742 proteins in 162 species: Archae - 0; Bacteria - 16; Metazoa - 264; Fungi - 145; Plants - 1231; Viruses - 3; Other Eukaryotes - 212 (source: NCBI BLink).  protein_id AT3G07360.1p  transcript_id AT3G07360.1  protein_id AT3G07360.1p  transcript_id AT3G07360.1  
At3g07360	chr3:002355636	0.0	W/2355636-2356613	AT3G07360.2  CDS  gene_syn ARABIDOPSIS THALIANA PLANT U-BOX 9, ATPUB9, PLANT U-BOX 9, PUB9  gene PUB9  function Encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.  go_component nucleus|GO:0005634|18552232|IDA  product PUB9 (PLANT U-BOX 9)  note PLANT U-BOX 9 (PUB9); LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein / U-box domain-containing protein (TAIR:AT5G18320.1); Has 855 Blast hits to 761 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 38; Fungi - 114; Plants - 653; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT3G07360.2p  transcript_id AT3G07360.2  protein_id AT3G07360.2p  transcript_id AT3G07360.2  
At3g07360	chr3:002355636	0.0	W/2355636-2356613	AT3G07360.3  CDS  gene_syn ARABIDOPSIS THALIANA PLANT U-BOX 9, ATPUB9, PLANT U-BOX 9, PUB9  gene PUB9  function Encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.  go_component nucleus|GO:0005634|18552232|IDA  product PUB9 (PLANT U-BOX 9)  note PLANT U-BOX 9 (PUB9); LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein / U-box domain-containing protein (TAIR:AT5G18320.1); Has 855 Blast hits to 761 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 38; Fungi - 114; Plants - 653; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT3G07360.3p  transcript_id AT3G07360.3  protein_id AT3G07360.3p  transcript_id AT3G07360.3  
At3g07370	chr3:002360197	0.0	C/2360197-2360301,2359824-2359891,2359651-2359714,2359423-2359494,2358987-2359120,2358743-2358896,2358547-2358657,2358323-2358451	AT3G07370.1  CDS  gene_syn ATCHIP, CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN, CHIP  gene CHIP  function Encodes AtCHIP, a new class of E3 ubiquitin ligases with three tetratricopeptide repeats and a U-box domain, structurally similar to the animal CHIP proteins. Plays an important role in plant cellular metabolism under temperature stress conditions. Functions as an E3 ubiquitin ligase of protein phosphatase 2A subunits and alters plant response to abscisic acid treatment.  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process response to temperature stimulus|GO:0009266|12805616|IEP  go_process response to temperature stimulus|GO:0009266|12805616|IMP  go_process response to salt stress|GO:0009651|16640601|IEP  go_process response to abscisic acid stimulus|GO:0009737|16640601|IMP  go_process protein ubiquitination|GO:0016567|12805616|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|12805616|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16640601|IDA  product CHIP (CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN); ubiquitin-protein ligase  note CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN (CHIP); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: response to salt stress, response to temperature stimulus, response to abscisic acid stimulus, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: PP5.2 (PROTEIN PHOSPHATASE 5.2); phosphoprotein phosphatase/ protein binding / protein serine/threonine phosphatase (TAIR:AT2G42810.2); Has 4794 Blast hits to 4163 proteins in 300 species: Archae - 24; Bacteria - 301; Metazoa - 1892; Fungi - 667; Plants - 1075; Viruses - 0; Other Eukaryotes - 835 (source: NCBI BLink).  protein_id AT3G07370.1p  transcript_id AT3G07370.1  protein_id AT3G07370.1p  transcript_id AT3G07370.1  
At3g07380	chr3:002361842	0.0	C/2361842-2362014,2361324-2361459	AT3G07380.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48190.1); Has 66 Blast hits to 65 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G07380.1p  transcript_id AT3G07380.1  protein_id AT3G07380.1p  transcript_id AT3G07380.1  
At3g07390	chr3:002365452	0.0	W/2365452-2366273	AT3G07390.1  CDS  gene_syn AIR12  gene AIR12  function isolated from differential screening of a cDNA library from auxin-treated root culture. sequence does not show homology to any known proteins and is predicted to be extracellular.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component anchored to plasma membrane|GO:0046658|12805588|IDA  go_component extracellular region|GO:0005576|10080694|TAS  go_component plasma membrane|GO:0005886|16618929|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process response to auxin stimulus|GO:0009733|10080694|IEP  go_process lateral root morphogenesis|GO:0010102|10080694|IEP  go_process extracellular matrix organization|GO:0030198|10080694|TAS  go_function extracellular matrix structural constituent|GO:0005201|10080694|TAS  product AIR12; extracellular matrix structural constituent  note AIR12; FUNCTIONS IN: extracellular matrix structural constituent; INVOLVED IN: response to auxin stimulus, lateral root morphogenesis, extracellular matrix organization; LOCATED IN: extracellular region, anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF568, DOMON-like (InterPro:IPR007613), DOMON related (InterPro:IPR005018); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT3G25290.2); Has 146 Blast hits to 146 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 1; Plants - 139; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G07390.1p  transcript_id AT3G07390.1  protein_id AT3G07390.1p  transcript_id AT3G07390.1  
At3g07400	chr3:002367456	0.0	W/2367456-2367719,2368000-2368109,2368295-2368357,2368443-2368617,2368732-2368836,2368926-2369053,2369144-2369681,2369893-2369958,2370191-2370267,2370387-2370662,2370746-2371085,2371175-2371327,2371415-2371957,2372065-2372238	AT3G07400.1  CDS  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_component cellular_component|GO:0005575||ND  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product lipase class 3 family protein  note lipase class 3 family protein; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); Has 274 Blast hits to 273 proteins in 48 species: Archae - 0; Bacteria - 6; Metazoa - 26; Fungi - 34; Plants - 176; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT3G07400.1p  transcript_id AT3G07400.1  protein_id AT3G07400.1p  transcript_id AT3G07400.1  
At3g07410	chr3:002373149	0.0	C/2373149-2373482,2372485-2372804	AT3G07410.1  CDS  gene_syn Arabidopsis Rab GTPase homolog A5b, AtRABA5b  gene AtRABA5b  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product AtRABA5b (Arabidopsis Rab GTPase homolog A5b); GTP binding  note Arabidopsis Rab GTPase homolog A5b (AtRABA5b); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: ARA4; GTP binding / GTPase/ protein binding (TAIR:AT2G43130.1); Has 22386 Blast hits to 22351 proteins in 619 species: Archae - 15; Bacteria - 99; Metazoa - 12578; Fungi - 2607; Plants - 2049; Viruses - 19; Other Eukaryotes - 5019 (source: NCBI BLink).  protein_id AT3G07410.1p  transcript_id AT3G07410.1  protein_id AT3G07410.1p  transcript_id AT3G07410.1  
At3g07420	chr3:002376183	0.0	C/2376183-2376644,2375831-2376076,2375116-2375700,2374845-2375030,2374701-2374765,2374498-2374627,2374179-2374421	AT3G07420.1  CDS  gene_syn ATNS2, NS2, SYNC2, SYNC2_ARATH, SYNTHETASE C2  gene NS2  function Encodes an asparaginyl-tRNA synthetase.  go_component mitochondrion|GO:0005739|10824085|IDA  go_component chloroplast|GO:0009507|10824085|IDA  go_process asparaginyl-tRNA aminoacylation|GO:0006421|9655910|ISS  go_function asparagine-tRNA ligase activity|GO:0004816|9655910|ISS  product NS2; asparagine-tRNA ligase  note NS2; FUNCTIONS IN: asparagine-tRNA ligase activity; INVOLVED IN: asparaginyl-tRNA aminoacylation; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (D, K and N) (InterPro:IPR004364), Aminoacyl-tRNA synthetase, class II (D, K and N)-like (InterPro:IPR018150), Aminoacyl-tRNA synthetase, class II, conserved region (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: SYNC1; ATP binding / aminoacyl-tRNA ligase/ asparagine-tRNA ligase/ aspartate-tRNA ligase/ nucleic acid binding / nucleotide binding (TAIR:AT5G56680.1); Has 5585 Blast hits to 4439 proteins in 1089 species: Archae - 254; Bacteria - 3268; Metazoa - 421; Fungi - 382; Plants - 120; Viruses - 0; Other Eukaryotes - 1140 (source: NCBI BLink).  protein_id AT3G07420.1p  transcript_id AT3G07420.1  protein_id AT3G07420.1p  transcript_id AT3G07420.1  
At3g07425	chr3:002378350	0.0	W/2378350-2378646	AT3G07425.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G07425.1p  transcript_id AT3G07425.1  protein_id AT3G07425.1p  transcript_id AT3G07425.1  
At3g07430	chr3:002379251	0.0	W/2379251-2379949	AT3G07430.1  CDS  gene_syn emb1990, embryo defective 1990  gene emb1990  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product emb1990 (embryo defective 1990)  note embryo defective 1990 (emb1990); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function YGGT (InterPro:IPR003425); BEST Arabidopsis thaliana protein match is: YGGT family protein (TAIR:AT4G27990.1); Has 484 Blast hits to 484 proteins in 149 species: Archae - 0; Bacteria - 273; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink).  protein_id AT3G07430.1p  transcript_id AT3G07430.1  protein_id AT3G07430.1p  transcript_id AT3G07430.1  
At3g07440	chr3:002381411	0.0	W/2381411-2381719,2381824-2381984,2382070-2382100,2382250-2382352,2382799-2382902	AT3G07440.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48530.1); Has 21 Blast hits to 21 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G07440.1p  transcript_id AT3G07440.1  protein_id AT3G07440.1p  transcript_id AT3G07440.1  
At3g07450	chr3:002383610	0.0	C/2383610-2383930	AT3G07450.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, embryo, sepal, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT3G52130.1); Has 32 Blast hits to 32 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G07450.1p  transcript_id AT3G07450.1  protein_id AT3G07450.1p  transcript_id AT3G07450.1  
At3g07460	chr3:002385147	0.0	C/2385147-2385617,2384837-2384899	AT3G07460.1  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G07470.1); Has 287 Blast hits to 287 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 286; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G07460.1p  transcript_id AT3G07460.1  protein_id AT3G07460.1p  transcript_id AT3G07460.1  
At3g07460	chr3:002385158	0.0	C/2385158-2385617,2384544-2384899	AT3G07460.2  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G07470.1); Has 287 Blast hits to 287 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 286; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G07460.2p  transcript_id AT3G07460.2  protein_id AT3G07460.2p  transcript_id AT3G07460.2  
At3g07470	chr3:002387888	0.0	C/2387888-2388343,2387291-2387344	AT3G07470.1  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G07460.1); Has 339 Blast hits to 339 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 338; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G07470.1p  transcript_id AT3G07470.1  protein_id AT3G07470.1p  transcript_id AT3G07470.1  
At3g07480	chr3:002389026	0.0	W/2389026-2389505	AT3G07480.1  CDS  go_component mitochondrion|GO:0005739|18385124|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_function electron carrier activity|GO:0009055||IEA  go_function iron-sulfur cluster binding|GO:0051536||IEA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  product electron carrier/ iron-sulfur cluster binding  note electron carrier/ iron-sulfur cluster binding; FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); Has 1153 Blast hits to 1153 proteins in 168 species: Archae - 0; Bacteria - 236; Metazoa - 115; Fungi - 5; Plants - 23; Viruses - 0; Other Eukaryotes - 774 (source: NCBI BLink).  protein_id AT3G07480.1p  transcript_id AT3G07480.1  protein_id AT3G07480.1p  transcript_id AT3G07480.1  
At3g07490	chr3:002391189	0.0	W/2391189-2391650	AT3G07490.1  CDS  gene_syn AGD11, ARF-GAP domain 11  gene AGD11  function A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_function calcium ion binding|GO:0005509||ISS  product AGD11 (ARF-GAP domain 11); calcium ion binding  note ARF-GAP domain 11 (AGD11); FUNCTIONS IN: calcium ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Parvalbumin (InterPro:IPR008080), EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: UNE14 (unfertilized embryo sac 14); calcium ion binding (TAIR:AT4G12860.1); Has 19852 Blast hits to 13229 proteins in 1232 species: Archae - 0; Bacteria - 108; Metazoa - 9403; Fungi - 3199; Plants - 3874; Viruses - 0; Other Eukaryotes - 3268 (source: NCBI BLink).  protein_id AT3G07490.1p  transcript_id AT3G07490.1  protein_id AT3G07490.1p  transcript_id AT3G07490.1  
At3g07500	chr3:002392387	0.0	W/2392387-2392387,2392933-2393384,2393509-2393709	AT3G07500.1  CDS  go_component cellular_component|GO:0005575||ND  go_process response to red or far red light|GO:0009639||ISS  go_function molecular_function|GO:0003674||ND  product far-red impaired responsive family protein / FAR1 family protein  note far-red impaired responsive family protein / FAR1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcription factor, FAR1-related (InterPro:IPR004330); BEST Arabidopsis thaliana protein match is: far-red impaired responsive family protein / FAR1 family protein (TAIR:AT2G43280.1); Has 470 Blast hits to 432 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G07500.1p  transcript_id AT3G07500.1  protein_id AT3G07500.1p  transcript_id AT3G07500.1  
At3g07510	chr3:002393895	0.0	C/2393895-2394464	AT3G07510.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01580.1); Has 69 Blast hits to 69 proteins in 10 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G07510.1p  transcript_id AT3G07510.1  protein_id AT3G07510.1p  transcript_id AT3G07510.1  
At3g07510	chr3:002393895	0.0	C/2393895-2394464	AT3G07510.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01580.1); Has 69 Blast hits to 69 proteins in 10 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G07510.2p  transcript_id AT3G07510.2  protein_id AT3G07510.2p  transcript_id AT3G07510.2  
At3g07520	chr3:002397988	0.0	C/2397988-2398291,2396535-2397784,2396025-2396331,2395558-2395931,2395121-2395471	AT3G07520.1  CDS  gene_syn ATGLR1.4, GLR1.4, GLUTAMATE RECEPTOR 1.4  gene GLR1.4  function member of Putative ligand-gated ion channel subunit family. Contains a functional cation - permeable pore domain. Involved in cellular cation homeostasis.  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process cellular calcium ion homeostasis|GO:0006874|11379626|NAS  go_process response to light stimulus|GO:0009416|11379626|NAS  go_process cellular cation homeostasis|GO:0030003|18625242|IDA  go_function intracellular ligand-gated ion channel activity|GO:0005217||ISS  go_function cation channel activity|GO:0005261|18625242|IDA  product GLR1.4 (GLUTAMATE RECEPTOR 1.4); cation channel/ intracellular ligand-gated ion channel  note GLUTAMATE RECEPTOR 1.4 (GLR1.4); FUNCTIONS IN: intracellular ligand-gated ion channel activity, cation channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus, cellular cation homeostasis; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: ATGLR1.2; intracellular ligand-gated ion channel (TAIR:AT5G48400.2); Has 2561 Blast hits to 2528 proteins in 232 species: Archae - 4; Bacteria - 283; Metazoa - 1902; Fungi - 0; Plants - 309; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT3G07520.1p  transcript_id AT3G07520.1  protein_id AT3G07520.1p  transcript_id AT3G07520.1  
At3g07522	chr3:002398746	0.0	C/2398746-2398874	AT3G07522.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G07522.1p  transcript_id AT3G07522.1  protein_id AT3G07522.1p  transcript_id AT3G07522.1  
At3g07525	chr3:002400222	0.0	C/2400222-2400380,2400087-2400137,2399939-2400019,2399740-2399839,2399562-2399659,2399277-2399465	AT3G07525.1  CDS  gene_syn ATG10, autophagy 10  gene ATG10  function Encodes an E1 ligase involved in autophagic vesicle formation.  go_component cellular_component|GO:0005575||ND  go_process autophagy|GO:0006914|18245858|IMP  go_function ubiquitin activating enzyme activity|GO:0004839|18245858|IMP  go_function transporter activity|GO:0005215||ISS  product ATG10 (autophagy 10); transporter/ ubiquitin activating enzyme  note autophagy 10 (ATG10); FUNCTIONS IN: ubiquitin activating enzyme activity, transporter activity; INVOLVED IN: autophagy; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Autophagocytosis associated protein, C-terminal (InterPro:IPR007135); Has 298 Blast hits to 298 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 189; Fungi - 55; Plants - 27; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT3G07525.1p  transcript_id AT3G07525.1  protein_id AT3G07525.1p  transcript_id AT3G07525.1  
At3g07525	chr3:002400222	0.0	C/2400222-2400380,2400087-2400140,2399939-2400019,2399740-2399839,2399562-2399659,2399277-2399465	AT3G07525.2  CDS  gene_syn ATG10, autophagy 10  gene ATG10  function Encodes an E1 ligase involved in autophagic vesicle formation.  go_component cellular_component|GO:0005575||ND  go_process autophagy|GO:0006914|18245858|IMP  go_function ubiquitin activating enzyme activity|GO:0004839|18245858|IMP  go_function transporter activity|GO:0005215||ISS  product ATG10 (autophagy 10); transporter/ ubiquitin activating enzyme  note autophagy 10 (ATG10); FUNCTIONS IN: ubiquitin activating enzyme activity, transporter activity; INVOLVED IN: autophagy; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Autophagocytosis associated protein, C-terminal (InterPro:IPR007135); Has 295 Blast hits to 295 proteins in 97 species: Archae - 0; Bacteria - 0; Metazoa - 189; Fungi - 52; Plants - 27; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT3G07525.2p  transcript_id AT3G07525.2  protein_id AT3G07525.2p  transcript_id AT3G07525.2  
At3g07530	chr3:002400793	0.0	W/2400793-2400801,2400899-2401276,2401375-2401589,2401680-2402009,2402107-2402296,2402428-2402520,2402647-2402738,2402969-2403098,2403185-2403270,2403618-2403669,2403756-2404280	AT3G07530.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 455 Blast hits to 448 proteins in 117 species: Archae - 22; Bacteria - 4; Metazoa - 289; Fungi - 34; Plants - 41; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT3G07530.1p  transcript_id AT3G07530.1  protein_id AT3G07530.1p  transcript_id AT3G07530.1  
At3g07540	chr3:002405796	0.0	C/2405796-2407464,2405468-2405712,2404763-2405374	AT3G07540.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process cellular component organization|GO:0016043||IEA  go_process actin cytoskeleton organization|GO:0030036||IEA  go_function actin binding|GO:0003779|12417149|ISS  go_function actin binding|GO:0003779|15256004|ISS  go_function actin binding|GO:0003779||ISS  product formin homology 2 domain-containing protein / FH2 domain-containing protein  note formin homology 2 domain-containing protein / FH2 domain-containing protein; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding FH2 and DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: formin homology 2 domain-containing protein / FH2 domain-containing protein (TAIR:AT5G48360.1); Has 3523 Blast hits to 2955 proteins in 263 species: Archae - 0; Bacteria - 116; Metazoa - 1604; Fungi - 302; Plants - 670; Viruses - 102; Other Eukaryotes - 729 (source: NCBI BLink).  protein_id AT3G07540.1p  transcript_id AT3G07540.1  protein_id AT3G07540.1p  transcript_id AT3G07540.1  
At3g07550	chr3:002409946	0.0	W/2409946-2411133	AT3G07550.1  CDS  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product F-box family protein (FBL12)  note F-box family protein (FBL12); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23340.1); Has 4626 Blast hits to 2067 proteins in 162 species: Archae - 0; Bacteria - 200; Metazoa - 2407; Fungi - 443; Plants - 1153; Viruses - 0; Other Eukaryotes - 423 (source: NCBI BLink).  protein_id AT3G07550.1p  transcript_id AT3G07550.1  protein_id AT3G07550.1p  transcript_id AT3G07550.1  
At3g07550	chr3:002409946	0.0	W/2409946-2411133	AT3G07550.2  CDS  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product F-box family protein (FBL12)  note F-box family protein (FBL12); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23340.1); Has 4626 Blast hits to 2067 proteins in 162 species: Archae - 0; Bacteria - 200; Metazoa - 2407; Fungi - 443; Plants - 1153; Viruses - 0; Other Eukaryotes - 423 (source: NCBI BLink).  protein_id AT3G07550.2p  transcript_id AT3G07550.2  protein_id AT3G07550.2p  transcript_id AT3G07550.2  
At3g07560	chr3:002413292	0.0	C/2413292-2413310,2412555-2412794,2412131-2412474,2411932-2412024,2411616-2411834	AT3G07560.1  CDS  gene_syn ABERRANT PEROXISOME MORPHOLOGY 2, APM2, PEROXIN 13, PEX13  gene PEX13  function Encodes peroxin 13 (PEX13) involved in protein transport into peroxisomes.  go_component peroxisomal membrane|GO:0005778|16813573|IDA  go_process fatty acid beta-oxidation|GO:0006635|17478547|IMP  go_process protein import into peroxisome matrix|GO:0016558|16813573|IMP  go_process protein import into peroxisome matrix|GO:0016558|17478547|IMP  go_function protein binding|GO:0005515|16813573|IPI  product PEX13 (PEROXIN 13); protein binding  note PEROXIN 13 (PEX13); FUNCTIONS IN: protein binding; INVOLVED IN: protein import into peroxisome matrix, fatty acid beta-oxidation; LOCATED IN: peroxisomal membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 53408 Blast hits to 14942 proteins in 976 species: Archae - 43; Bacteria - 21155; Metazoa - 16239; Fungi - 3254; Plants - 6057; Viruses - 367; Other Eukaryotes - 6293 (source: NCBI BLink).  protein_id AT3G07560.1p  transcript_id AT3G07560.1  protein_id AT3G07560.1p  transcript_id AT3G07560.1  
At3g07565	chr3:002413823	0.0	W/2413823-2414061,2414528-2414627,2414763-2414825,2415061-2415181,2415272-2415354,2415553-2415614,2415761-2415872	AT3G07565.3  CDS  go_component chloroplast|GO:0009507||IEA  go_function DNA binding|GO:0003677||IEA  go_process biological_process|GO:0008150||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10820.2); Has 92 Blast hits to 92 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G07565.3p  transcript_id AT3G07565.3  protein_id AT3G07565.3p  transcript_id AT3G07565.3  
At3g07565	chr3:002413823	0.0	W/2413823-2414061,2414528-2414627,2414763-2414825,2415064-2415181,2415272-2415354,2415553-2415614,2415761-2415872	AT3G07565.1  CDS  go_component chloroplast|GO:0009507||IEA  go_function DNA binding|GO:0003677||IEA  go_process biological_process|GO:0008150||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10820.2); Has 93 Blast hits to 93 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G07565.1p  transcript_id AT3G07565.1  protein_id AT3G07565.1p  transcript_id AT3G07565.1  
At3g07565	chr3:002413823	0.0	W/2413823-2414061,2414528-2414627,2414763-2414825,2415064-2415240	AT3G07565.2  CDS  go_component chloroplast|GO:0009507||IEA  go_function DNA binding|GO:0003677||IEA  go_process biological_process|GO:0008150||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10820.2); Has 85 Blast hits to 85 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G07565.2p  transcript_id AT3G07565.2  protein_id AT3G07565.2p  transcript_id AT3G07565.2  
At3g07568	chr3:002417639	0.0	C/2417639-2417752,2417469-2417549,2416494-2416505	AT3G07568.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 6 Blast hits to 6 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G07568.1p  transcript_id AT3G07568.1  protein_id AT3G07568.1p  transcript_id AT3G07568.1  
At3g07570	chr3:002420027	0.0	C/2420027-2420206,2419543-2419948,2418535-2418827,2418205-2418435	AT3G07570.1  CDS  go_process histidine catabolic process|GO:0006548||IEA  go_function dopamine beta-monooxygenase activity|GO:0004500||IEA  go_component membrane|GO:0016020|10080694|ISS  product membrane protein, putative  note membrane protein, putative; FUNCTIONS IN: dopamine beta-monooxygenase activity; INVOLVED IN: histidine catabolic process; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: DOMON related (InterPro:IPR005018), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593), DOMON (InterPro:IPR013050); BEST Arabidopsis thaliana protein match is: auxin-responsive protein -related (TAIR:AT3G61750.1); Has 348 Blast hits to 348 proteins in 72 species: Archae - 0; Bacteria - 2; Metazoa - 104; Fungi - 22; Plants - 211; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G07570.1p  transcript_id AT3G07570.1  protein_id AT3G07570.1p  transcript_id AT3G07570.1  
At3g07580	chr3:002422612	0.0	C/2422612-2422661,2422464-2422495,2421882-2422028,2421606-2421656,2421381-2421433,2421177-2421275	AT3G07580.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48335.1); Has 22 Blast hits to 22 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G07580.1p  transcript_id AT3G07580.1  protein_id AT3G07580.1p  transcript_id AT3G07580.1  
At3g07590	chr3:002423146	0.0	W/2423146-2423159,2423299-2423375,2423603-2423794,2423897-2423958	AT3G07590.1  CDS  go_component plasma membrane|GO:0005886|17151019|IDA  go_component nucleus|GO:0005634||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_function molecular_function|GO:0003674||ND  product small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative  note small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative; FUNCTIONS IN: molecular_function unknown; LOCATED IN: small nucleolar ribonucleoprotein complex, nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative (TAIR:AT4G02840.1); Has 828 Blast hits to 827 proteins in 166 species: Archae - 0; Bacteria - 2; Metazoa - 337; Fungi - 221; Plants - 121; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink).  protein_id AT3G07590.1p  transcript_id AT3G07590.1  protein_id AT3G07590.1p  transcript_id AT3G07590.1  
At3g07600	chr3:002424949	0.0	C/2424949-2424954,2424768-2424846,2424300-2424688	AT3G07600.1  CDS  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT5G48290.1); Has 768 Blast hits to 542 proteins in 107 species: Archae - 0; Bacteria - 145; Metazoa - 38; Fungi - 25; Plants - 361; Viruses - 17; Other Eukaryotes - 182 (source: NCBI BLink).  protein_id AT3G07600.1p  transcript_id AT3G07600.1  protein_id AT3G07600.1p  transcript_id AT3G07600.1  
At3g07610	chr3:002426148	0.0	W/2426148-2426600,2426684-2426781,2426883-2426982,2427080-2427218,2427387-2427450,2427556-2428426,2428795-2429124,2431099-2431386,2431497-2431569,2431646-2431731,2431842-2431961,2432062-2432120,2432217-2432321,2432397-2432486,2432575-2432661,2432756-2432876	AT3G07610.1  CDS  gene_syn IBM1, increase in bonsai methylation 1  gene IBM1  function IBM1 likely encodes a protein with histone H3mK9 demethylation activity. It may preferentially demethylate H3mK9 at low-copy loci to protect them from silencing by nearby heterochromatin by preventing the spread of cytosine methylation. BONSAI (At1g73177) is hypermethylated in ibm1 mutants. ibm1 mutants have morphological defects that become apparent at the F3 generation, including small narrow leaves, arrested flower development, and faulty pollen development. These phenotypes cannot result solely from the BONSAI hypermethylation. Aberrant phenotypes in ibm1 mutants in both DNA methylation and plant development can be suppressed by mutations in the KYP H3K9 methyltransferase or he CMT3 non CG-cytosine methylase.  go_component cellular_component|GO:0005575||ND  go_process pollen development|GO:0009555|18218897|IMP  go_process flower development|GO:0009908|18218897|IMP  go_process DNA methylation on cytosine|GO:0032776|18218897|IGI  go_process DNA methylation on cytosine|GO:0032776|18218897|IMP  go_process histone H3-K9 demethylation|GO:0033169|18218897|IGI  go_process histone H3-K9 demethylation|GO:0033169|18218897|IMP  go_process leaf development|GO:0048366|18218897|IMP  go_function transcription factor activity|GO:0003700||ISS  go_function histone demethylase activity (H3-K9 specific)|GO:0032454|18218897|ISS  product IBM1 (increase in bonsai methylation 1); histone demethylase(H3-K9 specific) / transcription factor  note increase in bonsai methylation 1 (IBM1); FUNCTIONS IN: transcription factor activity, histone demethylase activity (H3-K9 specific); INVOLVED IN: flower development, DNA methylation on cytosine, leaf development, histone H3-K9 demethylation, pollen development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT1G11950.1); Has 3188 Blast hits to 986 proteins in 195 species: Archae - 5; Bacteria - 1046; Metazoa - 446; Fungi - 84; Plants - 723; Viruses - 8; Other Eukaryotes - 876 (source: NCBI BLink).  protein_id AT3G07610.1p  transcript_id AT3G07610.1  protein_id AT3G07610.1p  transcript_id AT3G07610.1  
At3g07610	chr3:002426148	0.0	W/2426148-2426600,2426684-2426781,2426883-2426982,2427080-2427218,2427387-2427450,2427556-2428426,2428795-2429358	AT3G07610.2  CDS  gene_syn IBM1, increase in bonsai methylation 1  gene IBM1  function IBM1 likely encodes a protein with histone H3mK9 demethylation activity. It may preferentially demethylate H3mK9 at low-copy loci to protect them from silencing by nearby heterochromatin by preventing the spread of cytosine methylation. BONSAI (At1g73177) is hypermethylated in ibm1 mutants. ibm1 mutants have morphological defects that become apparent at the F3 generation, including small narrow leaves, arrested flower development, and faulty pollen development. These phenotypes cannot result solely from the BONSAI hypermethylation. Aberrant phenotypes in ibm1 mutants in both DNA methylation and plant development can be suppressed by mutations in the KYP H3K9 methyltransferase or he CMT3 non CG-cytosine methylase.  go_component cellular_component|GO:0005575||ND  go_process pollen development|GO:0009555|18218897|IMP  go_process flower development|GO:0009908|18218897|IMP  go_process DNA methylation on cytosine|GO:0032776|18218897|IGI  go_process DNA methylation on cytosine|GO:0032776|18218897|IMP  go_process histone H3-K9 demethylation|GO:0033169|18218897|IGI  go_process histone H3-K9 demethylation|GO:0033169|18218897|IMP  go_process leaf development|GO:0048366|18218897|IMP  go_function transcription factor activity|GO:0003700||ISS  go_function histone demethylase activity (H3-K9 specific)|GO:0032454|18218897|ISS  product IBM1 (increase in bonsai methylation 1); histone demethylase(H3-K9 specific) / transcription factor  note increase in bonsai methylation 1 (IBM1); FUNCTIONS IN: transcription factor activity, histone demethylase activity (H3-K9 specific); INVOLVED IN: flower development, DNA methylation on cytosine, leaf development, histone H3-K9 demethylation, pollen development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347); BEST Arabidopsis thaliana protein match is: transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT4G00990.1); Has 3058 Blast hits to 897 proteins in 181 species: Archae - 5; Bacteria - 1029; Metazoa - 405; Fungi - 82; Plants - 691; Viruses - 8; Other Eukaryotes - 838 (source: NCBI BLink).  protein_id AT3G07610.2p  transcript_id AT3G07610.2  protein_id AT3G07610.2p  transcript_id AT3G07610.2  
At3g07620	chr3:002434788	0.0	C/2434788-2434988,2434417-2434616,2433993-2434344,2433267-2433926	AT3G07620.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product exostosin family protein  note exostosin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G03795.1); Has 886 Blast hits to 882 proteins in 88 species: Archae - 0; Bacteria - 6; Metazoa - 264; Fungi - 4; Plants - 513; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).  protein_id AT3G07620.1p  transcript_id AT3G07620.1  protein_id AT3G07620.1p  transcript_id AT3G07620.1  
At3g07630	chr3:002435457	0.0	W/2435457-2435700,2435842-2435909,2435994-2436086,2436184-2436384,2436465-2436545,2436632-2436727,2436821-2436898,2436996-2437085,2437175-2437227,2437319-2437400,2437471-2437530	AT3G07630.1  CDS  gene_syn ADT2, arogenate dehydratase 2  gene ADT2  function Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identi& 64257;ed in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250].  go_process metabolic process|GO:0008152||IEA  go_process L-phenylalanine biosynthetic process|GO:0009094||IEA  go_component chloroplast|GO:0009507|19136569|IDA  go_process L-phenylalanine biosynthetic process|GO:0009094||ISS  go_function prephenate dehydratase activity|GO:0004664||ISS  go_function arogenate dehydratase activity|GO:0047769|17726025|IDA  product ADT2 (arogenate dehydratase 2); arogenate dehydratase/ prephenate dehydratase  note arogenate dehydratase 2 (ADT2); FUNCTIONS IN: arogenate dehydratase activity, prephenate dehydratase activity; INVOLVED IN: L-phenylalanine biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prephenate dehydratase (InterPro:IPR001086), Amino acid-binding ACT (InterPro:IPR002912), Prephenate dehydratase, conserved site (InterPro:IPR018528); BEST Arabidopsis thaliana protein match is: ADT1 (arogenate dehydratase 1); arogenate dehydratase/ prephenate dehydratase (TAIR:AT1G11790.1); Has 5096 Blast hits to 5095 proteins in 1202 species: Archae - 120; Bacteria - 2090; Metazoa - 9; Fungi - 71; Plants - 134; Viruses - 0; Other Eukaryotes - 2672 (source: NCBI BLink).  protein_id AT3G07630.1p  transcript_id AT3G07630.1  protein_id AT3G07630.1p  transcript_id AT3G07630.1  
At3g07630	chr3:002435457	0.0	W/2435457-2435700,2435842-2435909,2435994-2436086,2436184-2436384,2436465-2436545,2436632-2436727,2436821-2436898,2436996-2437085,2437175-2437227,2437319-2437400,2437471-2437530	AT3G07630.2  CDS  gene_syn ADT2, arogenate dehydratase 2  gene ADT2  function Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identi& 64257;ed in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250].  go_process metabolic process|GO:0008152||IEA  go_process L-phenylalanine biosynthetic process|GO:0009094||IEA  go_component chloroplast|GO:0009507|19136569|IDA  go_process L-phenylalanine biosynthetic process|GO:0009094||ISS  go_function prephenate dehydratase activity|GO:0004664||ISS  go_function arogenate dehydratase activity|GO:0047769|17726025|IDA  product ADT2 (arogenate dehydratase 2); arogenate dehydratase/ prephenate dehydratase  note arogenate dehydratase 2 (ADT2); FUNCTIONS IN: arogenate dehydratase activity, prephenate dehydratase activity; INVOLVED IN: L-phenylalanine biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prephenate dehydratase (InterPro:IPR001086), Amino acid-binding ACT (InterPro:IPR002912), Prephenate dehydratase, conserved site (InterPro:IPR018528); BEST Arabidopsis thaliana protein match is: ADT1 (arogenate dehydratase 1); arogenate dehydratase/ prephenate dehydratase (TAIR:AT1G11790.1); Has 5096 Blast hits to 5095 proteins in 1202 species: Archae - 120; Bacteria - 2090; Metazoa - 9; Fungi - 71; Plants - 134; Viruses - 0; Other Eukaryotes - 2672 (source: NCBI BLink).  protein_id AT3G07630.2p  transcript_id AT3G07630.2  protein_id AT3G07630.2p  transcript_id AT3G07630.2  
At3g07640	chr3:002438171	0.0	W/2438171-2438277,2438351-2438450,2439048-2439437,2439533-2439661	AT3G07640.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G07640.1p  transcript_id AT3G07640.1  protein_id AT3G07640.1p  transcript_id AT3G07640.1  
At3g07650	chr3:002442494	0.0	W/2442494-2443021,2443123-2443293,2443387-2443676,2443772-2443901	AT3G07650.1  CDS  gene_syn COL9, CONSTANS-LIKE 9  gene COL9  function This gene belongs to the CO (CONSTANS) gene family. This gene family is divided in three subgroups: groups III, to which COL9 belongs, is characterised by one B-box (supposed to regulate protein-protein interactions) and a second diverged zinc finger. COL9 downregulates expression of CO (CONSTANS) as well as FT and SOC1 which are known regulatory targets of CO.  go_component nucleus|GO:0005634|16115071|IDA  go_process circadian rhythm|GO:0007623|16115071|IEP  go_process regulation of transcription|GO:0045449|16115071|TAS  go_process negative regulation of long-day photoperiodism, flowering|GO:0048579|16115071|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product COL9 (CONSTANS-LIKE 9); transcription factor/ zinc ion binding  note CONSTANS-LIKE 9 (COL9); FUNCTIONS IN: transcription factor activity, zinc ion binding; INVOLVED IN: negative regulation of long-day photoperiodism, flowering, circadian rhythm, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: zinc finger (B-box type) family protein (TAIR:AT5G48250.1); Has 1873 Blast hits to 1297 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 2; Plants - 1805; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT3G07650.1p  transcript_id AT3G07650.1  protein_id AT3G07650.1p  transcript_id AT3G07650.1  
At3g07650	chr3:002442494	0.0	W/2442494-2443021,2443123-2443293,2443387-2443676,2443772-2443901	AT3G07650.2  CDS  gene_syn COL9, CONSTANS-LIKE 9  gene COL9  function This gene belongs to the CO (CONSTANS) gene family. This gene family is divided in three subgroups: groups III, to which COL9 belongs, is characterised by one B-box (supposed to regulate protein-protein interactions) and a second diverged zinc finger. COL9 downregulates expression of CO (CONSTANS) as well as FT and SOC1 which are known regulatory targets of CO.  go_component nucleus|GO:0005634|16115071|IDA  go_process circadian rhythm|GO:0007623|16115071|IEP  go_process regulation of transcription|GO:0045449|16115071|TAS  go_process negative regulation of long-day photoperiodism, flowering|GO:0048579|16115071|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product COL9 (CONSTANS-LIKE 9); transcription factor/ zinc ion binding  note CONSTANS-LIKE 9 (COL9); FUNCTIONS IN: transcription factor activity, zinc ion binding; INVOLVED IN: negative regulation of long-day photoperiodism, flowering, circadian rhythm, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: zinc finger (B-box type) family protein (TAIR:AT5G48250.1); Has 1873 Blast hits to 1297 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 2; Plants - 1805; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT3G07650.2p  transcript_id AT3G07650.2  protein_id AT3G07650.2p  transcript_id AT3G07650.2  
At3g07650	chr3:002442494	0.0	W/2442494-2443021,2443123-2443293,2443387-2443676,2443772-2443901	AT3G07650.3  CDS  gene_syn COL9, CONSTANS-LIKE 9  gene COL9  function This gene belongs to the CO (CONSTANS) gene family. This gene family is divided in three subgroups: groups III, to which COL9 belongs, is characterised by one B-box (supposed to regulate protein-protein interactions) and a second diverged zinc finger. COL9 downregulates expression of CO (CONSTANS) as well as FT and SOC1 which are known regulatory targets of CO.  go_component nucleus|GO:0005634|16115071|IDA  go_process circadian rhythm|GO:0007623|16115071|IEP  go_process regulation of transcription|GO:0045449|16115071|TAS  go_process negative regulation of long-day photoperiodism, flowering|GO:0048579|16115071|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product COL9 (CONSTANS-LIKE 9); transcription factor/ zinc ion binding  note CONSTANS-LIKE 9 (COL9); FUNCTIONS IN: transcription factor activity, zinc ion binding; INVOLVED IN: negative regulation of long-day photoperiodism, flowering, circadian rhythm, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: zinc finger (B-box type) family protein (TAIR:AT5G48250.1); Has 1873 Blast hits to 1297 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 2; Plants - 1805; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT3G07650.3p  transcript_id AT3G07650.3  protein_id AT3G07650.3p  transcript_id AT3G07650.3  
At3g07650	chr3:002442494	0.0	W/2442494-2443021,2443123-2443293,2443387-2443676,2443772-2443901	AT3G07650.4  CDS  gene_syn COL9, CONSTANS-LIKE 9  gene COL9  function This gene belongs to the CO (CONSTANS) gene family. This gene family is divided in three subgroups: groups III, to which COL9 belongs, is characterised by one B-box (supposed to regulate protein-protein interactions) and a second diverged zinc finger. COL9 downregulates expression of CO (CONSTANS) as well as FT and SOC1 which are known regulatory targets of CO.  go_component nucleus|GO:0005634|16115071|IDA  go_process circadian rhythm|GO:0007623|16115071|IEP  go_process regulation of transcription|GO:0045449|16115071|TAS  go_process negative regulation of long-day photoperiodism, flowering|GO:0048579|16115071|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product COL9 (CONSTANS-LIKE 9); transcription factor/ zinc ion binding  note CONSTANS-LIKE 9 (COL9); FUNCTIONS IN: transcription factor activity, zinc ion binding; INVOLVED IN: negative regulation of long-day photoperiodism, flowering, circadian rhythm, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: zinc finger (B-box type) family protein (TAIR:AT5G48250.1); Has 1873 Blast hits to 1297 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 2; Plants - 1805; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT3G07650.4p  transcript_id AT3G07650.4  protein_id AT3G07650.4p  transcript_id AT3G07650.4  
At3g07660	chr3:002450207	0.0	C/2450207-2450372,2449517-2449560,2449297-2449402,2448878-2448992,2448232-2448701,2447620-2448007,2446809-2447103,2446474-2446632,2445648-2446145,2445275-2445559	AT3G07660.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1296 (InterPro:IPR009719); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13990.1); Has 2745 Blast hits to 1593 proteins in 237 species: Archae - 2; Bacteria - 220; Metazoa - 1100; Fungi - 379; Plants - 174; Viruses - 12; Other Eukaryotes - 858 (source: NCBI BLink).  protein_id AT3G07660.1p  transcript_id AT3G07660.1  protein_id AT3G07660.1p  transcript_id AT3G07660.1  
At3g07670	chr3:002451651	0.0	W/2451651-2452034,2452196-2452359,2452438-2452521,2452670-2452727,2452882-2452935,2453184-2453255,2453357-2453437,2453620-2453792,2453896-2453998,2454085-2454216,2454308-2454430,2454531-2454617	AT3G07670.1  CDS  go_component chloroplast|GO:0009507||IEA  go_function [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity|GO:0030785||IEA  go_process biological_process|GO:0008150||ND  product SET domain-containing protein  note SET domain-containing protein; FUNCTIONS IN: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rubisco methyltransferase (InterPro:IPR011192), SET (InterPro:IPR001214), Rubisco LSMT substrate-binding (InterPro:IPR015353); BEST Arabidopsis thaliana protein match is: SET domain-containing protein (TAIR:AT5G14260.3); Has 844 Blast hits to 844 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 241; Fungi - 238; Plants - 226; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).  protein_id AT3G07670.1p  transcript_id AT3G07670.1  protein_id AT3G07670.1p  transcript_id AT3G07670.1  
At3g07680	chr3:002455627	0.0	W/2455627-2455824,2456063-2456249,2456326-2456433,2456519-2456652	AT3G07680.1  CDS  gene_syn MLP3.13  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_process intracellular protein transport|GO:0006886||ISS  go_function protein transmembrane transporter activity|GO:0008320||ISS  product emp24/gp25L/p24 family protein  note emp24/gp25L/p24 family protein; FUNCTIONS IN: protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 protein-related (TAIR:AT3G22845.1); Has 672 Blast hits to 672 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 376; Fungi - 151; Plants - 95; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT3G07680.1p  transcript_id AT3G07680.1  protein_id AT3G07680.1p  transcript_id AT3G07680.1  
At3g07690	chr3:002457232	0.0	W/2457232-2457865,2458067-2458288,2458382-2458659,2459027-2459166,2459252-2459378	AT3G07690.1  CDS  gene_syn MLP3.14  go_component cytoplasm|GO:0005737||IEA  go_component glycerol-3-phosphate dehydrogenase complex|GO:0009331||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process glycerol-3-phosphate metabolic process|GO:0006072||IEA  go_process metabolic process|GO:0008152||IEA  go_process glycerol-3-phosphate catabolic process|GO:0046168||IEA  go_function catalytic activity|GO:0003824||IEA  go_function glycerol-3-phosphate dehydrogenase (NAD+) activity|GO:0004367||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on CH-OH group of donors|GO:0016614||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_function coenzyme binding|GO:0050662||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_component glycerol-3-phosphate dehydrogenase complex|GO:0009331||ISS  go_process glycerol-3-phosphate metabolic process|GO:0006072||ISS  go_function glycerol-3-phosphate dehydrogenase (NAD+) activity|GO:0004367||ISS  product NAD or NADH binding / binding / catalytic/ coenzyme binding / glycerol-3-phosphate dehydrogenase (NAD+)/ oxidoreductase/ oxidoreductase, acting on CH-OH group of donors / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor  note NAD or NADH binding / binding / catalytic/ coenzyme binding / glycerol-3-phosphate dehydrogenase (NAD+)/ oxidoreductase/ oxidoreductase, acting on CH-OH group of donors / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor; FUNCTIONS IN: in 8 functions; INVOLVED IN: glycerol-3-phosphate catabolic process, glycerol-3-phosphate metabolic process, carbohydrate metabolic process, metabolic process; LOCATED IN: glycerol-3-phosphate dehydrogenase complex, cytoplasm; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), NAD(P)-binding (InterPro:IPR016040), NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal (InterPro:IPR006109), NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal (InterPro:IPR011128), NAD-dependent glycerol-3-phosphate dehydrogenase (InterPro:IPR006168); BEST Arabidopsis thaliana protein match is: GPDHC1; NAD or NADH binding / glycerol-3-phosphate dehydrogenase (NAD+) (TAIR:AT2G41540.3); Has 2182 Blast hits to 2182 proteins in 581 species: Archae - 10; Bacteria - 1021; Metazoa - 281; Fungi - 47; Plants - 70; Viruses - 0; Other Eukaryotes - 753 (source: NCBI BLink).  protein_id AT3G07690.1p  transcript_id AT3G07690.1  protein_id AT3G07690.1p  transcript_id AT3G07690.1  
At3g07700	chr3:002462696	0.0	C/2462696-2463241,2462454-2462597,2462251-2462376,2462051-2462138,2461875-2461962,2461705-2461798,2461552-2461606,2461377-2461468,2461114-2461284,2460990-2461046,2460826-2460909,2460654-2460738,2460511-2460572,2460334-2460408,2460139-2460243,2459873-2460014,2459696-2459769	AT3G07700.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  product ABC1 family protein  note ABC1 family protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATATH13; transporter (TAIR:AT5G64940.2); Has 7549 Blast hits to 7505 proteins in 1104 species: Archae - 67; Bacteria - 2628; Metazoa - 384; Fungi - 314; Plants - 355; Viruses - 14; Other Eukaryotes - 3787 (source: NCBI BLink).  protein_id AT3G07700.1p  transcript_id AT3G07700.1  protein_id AT3G07700.1p  transcript_id AT3G07700.1  
At3g07700	chr3:002462696	0.0	C/2462696-2463241,2462454-2462597,2462251-2462376,2462051-2462138,2461875-2461962,2461705-2461798,2461552-2461606,2461377-2461468,2461114-2461284,2460990-2461046,2460826-2460909,2460654-2460738,2460511-2460572,2460334-2460408,2460139-2460243,2459873-2460014,2459696-2459769	AT3G07700.2  CDS  go_component chloroplast|GO:0009507|18431481|IDA  product ABC1 family protein  note ABC1 family protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATATH13; transporter (TAIR:AT5G64940.2); Has 7549 Blast hits to 7505 proteins in 1104 species: Archae - 67; Bacteria - 2628; Metazoa - 384; Fungi - 314; Plants - 355; Viruses - 14; Other Eukaryotes - 3787 (source: NCBI BLink).  protein_id AT3G07700.2p  transcript_id AT3G07700.2  protein_id AT3G07700.2p  transcript_id AT3G07700.2  
At3g07710	chr3:002464336	0.0	C/2464336-2464773	AT3G07710.1  CDS  gene_syn MLP3.16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related (TAIR:AT2G25650.1); Has 21 Blast hits to 21 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G07710.1p  transcript_id AT3G07710.1  protein_id AT3G07710.1p  transcript_id AT3G07710.1  
At3g07720	chr3:002465439	0.0	W/2465439-2465474,2466080-2467033	AT3G07720.1  CDS  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing protein  note kelch repeat-containing protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: NSP5 (NITRILE SPECIFIER PROTEIN 5) (TAIR:AT5G48180.1); Has 8161 Blast hits to 4457 proteins in 239 species: Archae - 8; Bacteria - 208; Metazoa - 4770; Fungi - 730; Plants - 968; Viruses - 16; Other Eukaryotes - 1461 (source: NCBI BLink).  protein_id AT3G07720.1p  transcript_id AT3G07720.1  protein_id AT3G07720.1p  transcript_id AT3G07720.1  
At3g07730	chr3:002468185	0.0	W/2468185-2469606	AT3G07730.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01170.1); Has 1172 Blast hits to 1023 proteins in 165 species: Archae - 3; Bacteria - 80; Metazoa - 419; Fungi - 100; Plants - 69; Viruses - 2; Other Eukaryotes - 499 (source: NCBI BLink).  protein_id AT3G07730.1p  transcript_id AT3G07730.1  protein_id AT3G07730.1p  transcript_id AT3G07730.1  
At3g07740	chr3:002472402	0.0	C/2472402-2472485,2472187-2472252,2471975-2472100,2471824-2471896,2471657-2471717,2471509-2471567,2471304-2471354,2470988-2471216,2470688-2470898,2470317-2470595,2470014-2470208	AT3G07740.2  CDS  gene_syn ADA2A, ATADA2A, HAC10, HOMOLOG OF YEAST ADA2 2A, HXA02, HXA2  gene ADA2A  function encodes a transcriptional adaptor ADA2a that interacts with histone acetyltransferase GCN5 homolog and CBF1  go_function DNA binding|GO:0003677||IEA  go_process response to cold|GO:0009409|18929690|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product ADA2A (HOMOLOG OF YEAST ADA2 2A); DNA binding / transcription factor  note HOMOLOG OF YEAST ADA2 2A (ADA2A); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to cold; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), SANT, eukarya (InterPro:IPR017884), SANT, DNA-binding (InterPro:IPR001005), Transcriptional adaptor 2 (InterPro:IPR016827), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), SWIRM (InterPro:IPR007526); BEST Arabidopsis thaliana protein match is: ADA2B (HOMOLOG OF YEAST ADA2 2B); DNA binding / transcription coactivator/ transcription factor (TAIR:AT4G16420.2); Has 1265 Blast hits to 1087 proteins in 161 species: Archae - 0; Bacteria - 20; Metazoa - 660; Fungi - 179; Plants - 108; Viruses - 0; Other Eukaryotes - 298 (source: NCBI BLink).  protein_id AT3G07740.2p  transcript_id AT3G07740.2  protein_id AT3G07740.2p  transcript_id AT3G07740.2  
At3g07740	chr3:002472402	0.0	C/2472402-2472635,2472187-2472252,2471975-2472100,2471824-2471896,2471657-2471717,2471509-2471567,2471304-2471354,2470988-2471216,2470688-2470898,2470317-2470595,2470014-2470208	AT3G07740.3  CDS  gene_syn ADA2A, ATADA2A, HAC10, HOMOLOG OF YEAST ADA2 2A, HXA02, HXA2  gene ADA2A  function encodes a transcriptional adaptor ADA2a that interacts with histone acetyltransferase GCN5 homolog and CBF1  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process response to cold|GO:0009409|18929690|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product ADA2A (HOMOLOG OF YEAST ADA2 2A); DNA binding / transcription factor/ zinc ion binding  note HOMOLOG OF YEAST ADA2 2A (ADA2A); FUNCTIONS IN: transcription factor activity, DNA binding, zinc ion binding; INVOLVED IN: response to cold; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SANT, eukarya (InterPro:IPR017884), SANT, DNA-binding (InterPro:IPR001005), Transcriptional adaptor 2 (InterPro:IPR016827), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), SWIRM (InterPro:IPR007526), Zinc finger, ZZ-type (InterPro:IPR000433); BEST Arabidopsis thaliana protein match is: ADA2B (HOMOLOG OF YEAST ADA2 2B); DNA binding / transcription coactivator/ transcription factor (TAIR:AT4G16420.2); Has 1433 Blast hits to 1250 proteins in 162 species: Archae - 0; Bacteria - 19; Metazoa - 805; Fungi - 190; Plants - 114; Viruses - 0; Other Eukaryotes - 305 (source: NCBI BLink).  protein_id AT3G07740.3p  transcript_id AT3G07740.3  protein_id AT3G07740.3p  transcript_id AT3G07740.3  
At3g07740	chr3:002473010	0.0	C/2473010-2473062,2472720-2472781,2472402-2472583,2472187-2472252,2471975-2472100,2471824-2471896,2471657-2471717,2471509-2471567,2471304-2471354,2470988-2471216,2470688-2470898,2470317-2470595,2470014-2470208	AT3G07740.1  CDS  gene_syn ADA2A, ATADA2A, HAC10, HOMOLOG OF YEAST ADA2 2A, HXA02, HXA2  gene ADA2A  function encodes a transcriptional adaptor ADA2a that interacts with histone acetyltransferase GCN5 homolog and CBF1  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process response to cold|GO:0009409|18929690|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product ADA2A (HOMOLOG OF YEAST ADA2 2A); DNA binding / transcription factor/ zinc ion binding  note HOMOLOG OF YEAST ADA2 2A (ADA2A); FUNCTIONS IN: transcription factor activity, DNA binding, zinc ion binding; INVOLVED IN: response to cold; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Transcriptional adaptor 2 (InterPro:IPR016827), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SWIRM (InterPro:IPR007526), SANT, eukarya (InterPro:IPR017884), Zinc finger, ZZ-type (InterPro:IPR000433); BEST Arabidopsis thaliana protein match is: ADA2B (HOMOLOG OF YEAST ADA2 2B); DNA binding / transcription coactivator/ transcription factor (TAIR:AT4G16420.2); Has 1436 Blast hits to 1255 proteins in 162 species: Archae - 0; Bacteria - 20; Metazoa - 803; Fungi - 194; Plants - 114; Viruses - 0; Other Eukaryotes - 305 (source: NCBI BLink).  protein_id AT3G07740.1p  transcript_id AT3G07740.1  protein_id AT3G07740.1p  transcript_id AT3G07740.1  
At3g07750	chr3:002473486	0.0	W/2473486-2473608,2473701-2473757,2473846-2473938,2474140-2474218,2474313-2474437,2474745-2474888,2474979-2475218	AT3G07750.1  CDS  gene_syn MLP3.20  go_process RNA processing|GO:0006396||IEA  go_function 3 -5 -exoribonuclease activity|GO:0000175||IEA  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process RNA processing|GO:0006396||ISS  go_function 3 -5 -exoribonuclease activity|GO:0000175||ISS  go_function RNA binding|GO:0003723||ISS  product 3  exoribonuclease family domain 1-containing protein  note 3  exoribonuclease family domain 1-containing protein; FUNCTIONS IN: 3 -5 -exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247); BEST Arabidopsis thaliana protein match is: RRP45a (Ribonuclease PH45a); 3 -5 -exoribonuclease/ RNA binding (TAIR:AT3G12990.2); Has 1078 Blast hits to 1076 proteins in 235 species: Archae - 205; Bacteria - 31; Metazoa - 296; Fungi - 206; Plants - 93; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).  protein_id AT3G07750.1p  transcript_id AT3G07750.1  protein_id AT3G07750.1p  transcript_id AT3G07750.1  
At3g07750	chr3:002473486	0.0	W/2473486-2473608,2473701-2473757,2473846-2473938,2474140-2474218,2474313-2474437,2474745-2474888,2474979-2475218	AT3G07750.2  CDS  gene_syn MLP3.20  go_process RNA processing|GO:0006396||IEA  go_function 3 -5 -exoribonuclease activity|GO:0000175||IEA  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process RNA processing|GO:0006396||ISS  go_function 3 -5 -exoribonuclease activity|GO:0000175||ISS  go_function RNA binding|GO:0003723||ISS  product 3  exoribonuclease family domain 1-containing protein  note 3  exoribonuclease family domain 1-containing protein; FUNCTIONS IN: 3 -5 -exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247); BEST Arabidopsis thaliana protein match is: RRP45a (Ribonuclease PH45a); 3 -5 -exoribonuclease/ RNA binding (TAIR:AT3G12990.2); Has 1078 Blast hits to 1076 proteins in 235 species: Archae - 205; Bacteria - 31; Metazoa - 296; Fungi - 206; Plants - 93; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).  protein_id AT3G07750.2p  transcript_id AT3G07750.2  protein_id AT3G07750.2p  transcript_id AT3G07750.2  
At3g07760	chr3:002476723	0.0	W/2476723-2476776,2477541-2477733,2477817-2477947	AT3G07760.1  CDS  gene_syn MLP3.21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sterile alpha motif SAM (InterPro:IPR001660), Sterile alpha motif homology (InterPro:IPR010993), Sterile alpha motif homology 2 (InterPro:IPR011510); Has 31 Blast hits to 31 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 19; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G07760.1p  transcript_id AT3G07760.1  protein_id AT3G07760.1p  transcript_id AT3G07760.1  
At3g07760	chr3:002476723	0.0	W/2476723-2476776,2477541-2477733,2477817-2477947	AT3G07760.2  CDS  gene_syn MLP3.21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sterile alpha motif SAM (InterPro:IPR001660), Sterile alpha motif homology (InterPro:IPR010993), Sterile alpha motif homology 2 (InterPro:IPR011510); Has 31 Blast hits to 31 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 19; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G07760.2p  transcript_id AT3G07760.2  protein_id AT3G07760.2p  transcript_id AT3G07760.2  
At3g07770	chr3:002479611	0.0	W/2479611-2479718,2479856-2480053,2480143-2480216,2480316-2480441,2480543-2480636,2480717-2480800,2480899-2481042,2481148-2481261,2481379-2481438,2481577-2481651,2481720-2481824,2481948-2482088,2482185-2482277,2482380-2482457,2482585-2482839,2482944-2483046,2483137-2483311,2483399-2483504,2483602-2483691,2483794-2483970	AT3G07770.1  CDS  go_component cell wall|GO:0005618|16287169|IDA  go_component mitochondrion|GO:0005739|17137349|IDA  go_process protein folding|GO:0006457||IEA  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process protein folding|GO:0006457||ISS  go_function ATP binding|GO:0005524||ISS  product ATP binding  note ATP binding; FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding; LOCATED IN: mitochondrion, cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp90 (InterPro:IPR001404), ATP-binding region, ATPase-like (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: CR88; ATP binding (TAIR:AT2G04030.1); Has 6443 Blast hits to 6394 proteins in 1668 species: Archae - 4; Bacteria - 2076; Metazoa - 1344; Fungi - 254; Plants - 279; Viruses - 0; Other Eukaryotes - 2486 (source: NCBI BLink).  protein_id AT3G07770.1p  transcript_id AT3G07770.1  protein_id AT3G07770.1p  transcript_id AT3G07770.1  
At3g07780	chr3:002485104	0.0	W/2485104-2486193,2486266-2486876	AT3G07780.1  CDS  gene_syn OBE1, OBERON1  gene OBE1  function Encodes a nuclear PHD finger protein that is functionally redundant with OBE2 and plays an important role in the maintenance and/or establishment of the root and shoot apical meristems.  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634|18403411|IDA  go_process embryonic development ending in seed dormancy|GO:0009793|18403411|IGI  go_process root meristem specification|GO:0010071|18403411|IGI  go_process maintenance of root meristem identity|GO:0010078|18403411|IGI  go_process regulation of gene expression|GO:0010468|19392692|IGI  go_process maintenance of shoot apical meristem identity|GO:0010492|18403411|IGI  go_process primary root development|GO:0080022|19392692|IGI  product OBE1 (OBERON1); protein binding / zinc ion binding  note OBERON1 (OBE1); FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: embryonic development ending in seed dormancy, root meristem specification, maintenance of root meristem identity, maintenance of shoot apical meristem identity; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082), Zinc finger, PHD-type (InterPro:IPR001965); BEST Arabidopsis thaliana protein match is: OBE2 (OBERON2); protein binding / zinc ion binding (TAIR:AT5G48160.2); Has 8183 Blast hits to 5310 proteins in 542 species: Archae - 76; Bacteria - 767; Metazoa - 3271; Fungi - 576; Plants - 263; Viruses - 84; Other Eukaryotes - 3146 (source: NCBI BLink).  protein_id AT3G07780.1p  transcript_id AT3G07780.1  protein_id AT3G07780.1p  transcript_id AT3G07780.1  
At3g07790	chr3:002487491	0.0	W/2487491-2489017	AT3G07790.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DGCR14-related  note DGCR14-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 242 Blast hits to 238 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 119; Fungi - 55; Plants - 18; Viruses - 13; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT3G07790.1p  transcript_id AT3G07790.1  protein_id AT3G07790.1p  transcript_id AT3G07790.1  
At3g07800	chr3:002490757	0.0	C/2490757-2490935,2490528-2490672,2490315-2490436,2489944-2490214	AT3G07800.1  CDS  go_process anaerobic respiration|GO:0009061||IEA  go_process pyrimidine deoxyribonucleoside interconversion|GO:0019690||IEA  go_function thymidine kinase activity|GO:0004797||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function thymidine kinase activity|GO:0004797||ISS  product thymidine kinase, putative  note thymidine kinase, putative; FUNCTIONS IN: thymidine kinase activity, ATP binding; INVOLVED IN: pyrimidine deoxyribonucleoside interconversion, anaerobic respiration; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thymidine kinase (InterPro:IPR001267); BEST Arabidopsis thaliana protein match is: thymidine kinase, putative (TAIR:AT5G23070.1); Has 2623 Blast hits to 2613 proteins in 820 species: Archae - 25; Bacteria - 1309; Metazoa - 114; Fungi - 4; Plants - 38; Viruses - 257; Other Eukaryotes - 876 (source: NCBI BLink).  protein_id AT3G07800.1p  transcript_id AT3G07800.1  protein_id AT3G07800.1p  transcript_id AT3G07800.1  
At3g07810	chr3:002492875	0.0	W/2492875-2493096,2493309-2494557,2495039-2495052	AT3G07810.1  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||ISS  product heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative  note heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative (TAIR:AT5G47620.2); Has 42736 Blast hits to 24033 proteins in 1056 species: Archae - 28; Bacteria - 9044; Metazoa - 16858; Fungi - 3663; Plants - 5111; Viruses - 137; Other Eukaryotes - 7895 (source: NCBI BLink).  protein_id AT3G07810.1p  transcript_id AT3G07810.1  protein_id AT3G07810.1p  transcript_id AT3G07810.1  
At3g07810	chr3:002492875	0.0	W/2492875-2493096,2493309-2494557,2495086-2495102	AT3G07810.2  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||ISS  product heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative  note heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative (TAIR:AT5G47620.2); Has 43002 Blast hits to 24068 proteins in 1060 species: Archae - 28; Bacteria - 9037; Metazoa - 17158; Fungi - 3651; Plants - 5112; Viruses - 139; Other Eukaryotes - 7877 (source: NCBI BLink).  protein_id AT3G07810.2p  transcript_id AT3G07810.2  protein_id AT3G07810.2p  transcript_id AT3G07810.2  
At3g07820	chr3:002497918	0.0	C/2497918-2498028,2497517-2497822,2496922-2497440,2496597-2496836	AT3G07820.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product polygalacturonase 3 (PGA3) / pectinase  note polygalacturonase 3 (PGA3) / pectinase; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: polygalacturonase, putative / pectinase, putative (TAIR:AT3G07830.1); Has 2216 Blast hits to 2209 proteins in 277 species: Archae - 2; Bacteria - 315; Metazoa - 8; Fungi - 977; Plants - 856; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT3G07820.1p  transcript_id AT3G07820.1  protein_id AT3G07820.1p  transcript_id AT3G07820.1  
At3g07830	chr3:002500853	0.0	C/2500853-2500966,2500439-2500744,2499832-2500350,2499454-2499708	AT3G07830.1  CDS  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product polygalacturonase, putative / pectinase, putative  note polygalacturonase, putative / pectinase, putative; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plant-type cell wall; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: polygalacturonase 3 (PGA3) / pectinase (TAIR:AT3G07820.1); Has 2197 Blast hits to 2189 proteins in 270 species: Archae - 2; Bacteria - 297; Metazoa - 8; Fungi - 979; Plants - 853; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT3G07830.1p  transcript_id AT3G07830.1  protein_id AT3G07830.1p  transcript_id AT3G07830.1  
At3g07840	chr3:002503362	0.0	C/2503362-2503475,2502979-2503284,2502363-2502881,2501893-2502159	AT3G07840.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product polygalacturonase, putative / pectinase, putative  note polygalacturonase, putative / pectinase, putative; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: polygalacturonase 3 (PGA3) / pectinase (TAIR:AT3G07820.1); Has 2226 Blast hits to 2219 proteins in 274 species: Archae - 2; Bacteria - 313; Metazoa - 8; Fungi - 979; Plants - 866; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT3G07840.1p  transcript_id AT3G07840.1  protein_id AT3G07840.1p  transcript_id AT3G07840.1  
At3g07850	chr3:002507178	0.0	C/2507178-2507438,2506774-2507082,2506169-2506684,2505813-2506061	AT3G07850.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase  note exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase (TAIR:AT3G14040.1); Has 2494 Blast hits to 2487 proteins in 351 species: Archae - 2; Bacteria - 401; Metazoa - 8; Fungi - 1134; Plants - 875; Viruses - 3; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT3G07850.1p  transcript_id AT3G07850.1  protein_id AT3G07850.1p  transcript_id AT3G07850.1  
At3g07860	chr3:002507895	0.0	W/2507895-2508087,2508184-2508289,2508365-2508464,2508558-2508656	AT3G07860.1  CDS  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25340.1); Has 107 Blast hits to 107 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 67; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G07860.1p  transcript_id AT3G07860.1  protein_id AT3G07860.1p  transcript_id AT3G07860.1  
At3g07870	chr3:002510871	0.0	W/2510871-2512124	AT3G07870.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G23880.1); Has 1176 Blast hits to 1171 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1174; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G07870.1p  transcript_id AT3G07870.1  protein_id AT3G07870.1p  transcript_id AT3G07870.1  
At3g07880	chr3:002514175	0.0	W/2514175-2514408,2514513-2514579,2514935-2515153,2515248-2515372,2515467-2515544	AT3G07880.1  CDS  go_component cytoplasm|GO:0005737||IEA  go_function Rho GDP-dissociation inhibitor activity|GO:0005094||IEA  go_component cytoplasm|GO:0005737||ISS  go_process biological_process|GO:0008150||ND  go_function Rho GDP-dissociation inhibitor activity|GO:0005094||ISS  product Rho GDP-dissociation inhibitor family protein  note Rho GDP-dissociation inhibitor family protein; FUNCTIONS IN: Rho GDP-dissociation inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), RHO protein GDP dissociation inhibitor (InterPro:IPR000406); BEST Arabidopsis thaliana protein match is: Rho GDP-dissociation inhibitor family protein (TAIR:AT1G62450.1); Has 499 Blast hits to 499 proteins in 128 species: Archae - 0; Bacteria - 0; Metazoa - 285; Fungi - 107; Plants - 63; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT3G07880.1p  transcript_id AT3G07880.1  protein_id AT3G07880.1p  transcript_id AT3G07880.1  
At3g07890	chr3:002518293	0.0	C/2518293-2518784,2517662-2517778,2517399-2517577,2517222-2517315,2517054-2517131,2516865-2516966,2516639-2516779	AT3G07890.1  CDS  go_component intracellular|GO:0005622||IEA  go_process regulation of Rab GTPase activity|GO:0032313||IEA  go_function RAB GTPase activator activity|GO:0005097||IEA  product RabGAP/TBC domain-containing protein  note RabGAP/TBC domain-containing protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: RAB GTPase activator (TAIR:AT2G39280.1); Has 3921 Blast hits to 3917 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 2221; Fungi - 701; Plants - 275; Viruses - 0; Other Eukaryotes - 724 (source: NCBI BLink).  protein_id AT3G07890.1p  transcript_id AT3G07890.1  protein_id AT3G07890.1p  transcript_id AT3G07890.1  
At3g07890	chr3:002518293	0.0	C/2518293-2518784,2517662-2517778,2517399-2517577,2517222-2517315,2517054-2517131,2516865-2516966,2516639-2516779	AT3G07890.2  CDS  go_component intracellular|GO:0005622||IEA  go_process regulation of Rab GTPase activity|GO:0032313||IEA  go_function RAB GTPase activator activity|GO:0005097||IEA  product RabGAP/TBC domain-containing protein  note RabGAP/TBC domain-containing protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: RAB GTPase activator (TAIR:AT2G39280.1); Has 3921 Blast hits to 3917 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 2221; Fungi - 701; Plants - 275; Viruses - 0; Other Eukaryotes - 724 (source: NCBI BLink).  protein_id AT3G07890.2p  transcript_id AT3G07890.2  protein_id AT3G07890.2p  transcript_id AT3G07890.2  
At3g07900	chr3:002520826	0.0	W/2520826-2521532,2521625-2521793,2521880-2521969,2522045-2522328,2522415-2522673,2522778-2523008	AT3G07900.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G44500.1); Has 435 Blast hits to 430 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 435; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G07900.1p  transcript_id AT3G07900.1  protein_id AT3G07900.1p  transcript_id AT3G07900.1  
At3g07910	chr3:002523976	0.0	C/2523976-2524048,2523786-2523823,2523367-2523480	AT3G07910.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Reactive oxygen species modulator 1 (InterPro:IPR018450); Has 146 Blast hits to 146 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 6; Plants - 24; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G07910.1p  transcript_id AT3G07910.1  protein_id AT3G07910.1p  transcript_id AT3G07910.1  
At3g07920	chr3:002526176	0.0	C/2526176-2526229,2525681-2525838,2525420-2525562,2525243-2525328,2524787-2524840	AT3G07920.1  CDS  go_process translational initiation|GO:0006413||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_component cellular_component|GO:0005575||ND  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product translation initiation factor  note translation initiation factor; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF2/IF5, N-terminal (InterPro:IPR016189), Translation initiation factor IF2/IF5, zinc-binding (InterPro:IPR016190), Translation initiation factor IF2/IF5 (InterPro:IPR002735); BEST Arabidopsis thaliana protein match is: EIF2 BETA; translation initiation factor (TAIR:AT5G20920.3); Has 894 Blast hits to 894 proteins in 251 species: Archae - 173; Bacteria - 0; Metazoa - 294; Fungi - 156; Plants - 95; Viruses - 2; Other Eukaryotes - 174 (source: NCBI BLink).  protein_id AT3G07920.1p  transcript_id AT3G07920.1  protein_id AT3G07920.1p  transcript_id AT3G07920.1  
At3g07930	chr3:002526720	0.0	W/2526720-2527737,2528105-2528145	AT3G07930.1  CDS  go_process base-excision repair|GO:0006284||ISS  product HhH-GPD base excision DNA repair family protein  note HhH-GPD base excision DNA repair family protein; INVOLVED IN: base-excision repair; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 87 Blast hits to 85 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 63; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G07930.1p  transcript_id AT3G07930.1  protein_id AT3G07930.1p  transcript_id AT3G07930.1  
At3g07930	chr3:002526720	0.0	W/2526720-2527745,2528095-2528145	AT3G07930.2  CDS  go_process base-excision repair|GO:0006284||ISS  product HhH-GPD base excision DNA repair family protein  note HhH-GPD base excision DNA repair family protein; INVOLVED IN: base-excision repair; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 86 Blast hits to 84 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 61; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT3G07930.2p  transcript_id AT3G07930.2  protein_id AT3G07930.2p  transcript_id AT3G07930.2  
At3g07930	chr3:002526720	0.0	W/2526720-2527745,2528105-2528416	AT3G07930.3  CDS  go_process DNA repair|GO:0006281||IEA  go_process base-excision repair|GO:0006284||IEA  go_function catalytic activity|GO:0003824||IEA  go_process base-excision repair|GO:0006284||ISS  product HhH-GPD base excision DNA repair family protein  note HhH-GPD base excision DNA repair family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, base-excision repair; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), HhH-GPD domain (InterPro:IPR003265); Has 247 Blast hits to 245 proteins in 63 species: Archae - 7; Bacteria - 37; Metazoa - 67; Fungi - 18; Plants - 23; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT3G07930.3p  transcript_id AT3G07930.3  protein_id AT3G07930.3p  transcript_id AT3G07930.3  
At3g07940	chr3:002529542	0.0	W/2529542-2529584,2529674-2529763,2529857-2529941,2530019-2530094,2530188-2530351,2530432-2530636,2530720-2530836,2530916-2531011,2531087-2531368	AT3G07940.1  CDS  go_process regulation of ARF GTPase activity|GO:0032312||IEA  go_function ARF GTPase activator activity|GO:0008060||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product zinc finger and C2 domain protein, putative  note zinc finger and C2 domain protein, putative; FUNCTIONS IN: ARF GTPase activator activity, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: ZAC; ARF GTPase activator/ phospholipid binding (TAIR:AT4G21160.4); Has 6990 Blast hits to 6250 proteins in 225 species: Archae - 0; Bacteria - 0; Metazoa - 4407; Fungi - 897; Plants - 936; Viruses - 0; Other Eukaryotes - 750 (source: NCBI BLink).  protein_id AT3G07940.1p  transcript_id AT3G07940.1  protein_id AT3G07940.1p  transcript_id AT3G07940.1  
At3g07950	chr3:002531982	0.0	W/2531982-2531993,2532113-2532237,2532595-2532655,2532758-2532924,2533166-2533271,2533383-2533585,2533689-2533826,2534175-2534277	AT3G07950.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product rhomboid protein-related  note rhomboid protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1751, integral membrane, eukaryotic (InterPro:IPR013861); Has 397 Blast hits to 397 proteins in 163 species: Archae - 6; Bacteria - 95; Metazoa - 104; Fungi - 97; Plants - 47; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT3G07950.1p  transcript_id AT3G07950.1  protein_id AT3G07950.1p  transcript_id AT3G07950.1  
At3g07960	chr3:002535274	0.0	W/2535274-2535544,2535622-2536369,2536454-2536621,2536699-2536864,2536938-2537054,2537147-2537340,2537438-2537571,2537656-2537716,2537802-2538090	AT3G07960.1  CDS  go_process phosphatidylinositol metabolic process|GO:0046488||IEA  go_function ATP binding|GO:0005524||IEA  go_function phosphatidylinositol phosphate kinase activity|GO:0016307||IEA  go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308||IEA  go_component cellular_component|GO:0005575||ND  go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308||ISS  product phosphatidylinositol-4-phosphate 5-kinase family protein  note phosphatidylinositol-4-phosphate 5-kinase family protein; FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding; INVOLVED IN: phosphatidylinositol metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, plant (InterPro:IPR017163), MORN motif (InterPro:IPR003409), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: PIP5K5 (PHOSPHATIDYLINOSITOL- 4-PHOSPHATE 5-KINASE 5); 1-phosphatidylinositol-4-phosphate 5-kinase (TAIR:AT2G41210.1); Has 23559 Blast hits to 6343 proteins in 384 species: Archae - 0; Bacteria - 2624; Metazoa - 3659; Fungi - 298; Plants - 745; Viruses - 0; Other Eukaryotes - 16233 (source: NCBI BLink).  protein_id AT3G07960.1p  transcript_id AT3G07960.1  protein_id AT3G07960.1p  transcript_id AT3G07960.1  
At3g07970	chr3:002541006	0.0	W/2541006-2541266,2541341-2541475,2541571-2541735,2541821-2541841,2541964-2542171,2542314-2542395,2542728-2542836,2542928-2543044,2543149-2543370	AT3G07970.1  CDS  gene_syn QRT2, QUARTET 2  gene QRT2  function Required for pollen separation during normal development. In qrt mutants, the outer walls of the four meiotic products of the pollen mother cell are fused, and pollen grains are released in tetrads.May be required for cell type-specific pectin degradation.  go_component endomembrane system|GO:0012505||IEA  go_process pectin catabolic process|GO:0045490|9744097|IMP  go_process pollen sperm cell differentiation|GO:0048235|8197459|IMP  go_process carbohydrate metabolic process|GO:0005975||ISS  go_process cell wall modification during abscission|GO:0009830|19168715|TAS  go_process anther dehiscence|GO:0009901|19168715|IMP  go_process fruit dehiscence|GO:0010047|19168715|IMP  go_function polygalacturonase activity|GO:0004650|19168715|IDA  go_function polygalacturonase activity|GO:0004650||ISS  product QRT2 (QUARTET 2); polygalacturonase  note QUARTET 2 (QRT2); FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: in 6 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: PGAZAT (POLYGALACTURONASE ABSCISSION ZONE A. THALIANA); polygalacturonase (TAIR:AT2G41850.1); Has 2465 Blast hits to 2459 proteins in 313 species: Archae - 2; Bacteria - 500; Metazoa - 8; Fungi - 986; Plants - 889; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT3G07970.1p  transcript_id AT3G07970.1  protein_id AT3G07970.1p  transcript_id AT3G07970.1  
At3g07980	chr3:002551033	0.0	C/2551033-2551092,2550774-2550908,2550623-2550643,2550460-2550533,2550290-2550380,2550134-2550217,2549899-2550000,2549614-2549745,2549417-2549488,2549195-2549298,2548957-2549056,2548444-2548821,2547863-2548195,2547743-2547787,2547351-2547530,2547177-2547260,2546818-2546915,2546632-2546715,2545566-2546290,2545103-2545473,2544843-2544977,2544355-2544758,2544154-2544268,2543893-2544069	AT3G07980.1  CDS  gene_syn MAP3K EPSILON PROTEIN KINASE 2, MAP3KE2, MAPKKK6  gene MAPKKK6  function MAP3K epsilon protein kinase 2 is functionally redundant with MAP3Ke1. Required for pollen development but not essential.  go_component vacuole|GO:0005773|14760709|IDA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function binding|GO:0005488||IEA  go_function ATP binding|GO:0005524||IEA  go_process plasma membrane organization|GO:0007009|16965555|IGI  go_process pollen development|GO:0009555|16965555|IGI  go_function kinase activity|GO:0016301||ISS  product MAPKKK6; ATP binding / binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note MAPKKK6; FUNCTIONS IN: in 6 functions; INVOLVED IN: plasma membrane organization, pollen development; LOCATED IN: vacuole; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: MAPKKK7; ATP binding / binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT3G13530.1); Has 99474 Blast hits to 97579 proteins in 3690 species: Archae - 77; Bacteria - 8534; Metazoa - 44062; Fungi - 8853; Plants - 19033; Viruses - 615; Other Eukaryotes - 18300 (source: NCBI BLink).  protein_id AT3G07980.1p  transcript_id AT3G07980.1  protein_id AT3G07980.1p  transcript_id AT3G07980.1  
At3g07990	chr3:002552544	0.0	W/2552544-2552913,2553005-2553100,2553193-2553285,2553366-2553451,2553525-2553785,2553868-2553995,2554079-2554174,2554313-2554418,2554501-2554644	AT3G07990.1  CDS  gene_syn SCPL27, serine carboxypeptidase-like 27  gene SCPL27  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product SCPL27 (serine carboxypeptidase-like 27); serine-type carboxypeptidase  note serine carboxypeptidase-like 27 (SCPL27); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl26 (serine carboxypeptidase-like 26); serine-type carboxypeptidase (TAIR:AT2G35780.1); Has 2491 Blast hits to 2440 proteins in 260 species: Archae - 0; Bacteria - 86; Metazoa - 579; Fungi - 564; Plants - 959; Viruses - 0; Other Eukaryotes - 303 (source: NCBI BLink).  protein_id AT3G07990.1p  transcript_id AT3G07990.1  protein_id AT3G07990.1p  transcript_id AT3G07990.1  
At3g08000	chr3:002555691	0.0	C/2555691-2555829,2555542-2555610,2555226-2555332,2555034-2555150	AT3G08000.1  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA-binding protein, putative  note RNA-binding protein, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4); RNA binding / double-stranded DNA binding / single-stranded DNA binding (TAIR:AT3G23830.2); Has 20333 Blast hits to 15298 proteins in 628 species: Archae - 10; Bacteria - 1098; Metazoa - 11562; Fungi - 2346; Plants - 3246; Viruses - 0; Other Eukaryotes - 2071 (source: NCBI BLink).  protein_id AT3G08000.1p  transcript_id AT3G08000.1  protein_id AT3G08000.1p  transcript_id AT3G08000.1  
At3g08010	chr3:002556046	0.0	W/2556046-2556524,2556596-2556665,2556752-2557067,2557167-2557426	AT3G08010.1  CDS  gene_syn ATAB2  gene ATAB2  function Encodes a chloroplast-localized protein ATAB2. ATAB2 is involved in the biogenesis of Photosystem I and II. ATAB2 has A/U-rich RNA-binding activity and presumably functions as an activator of translation with targets at PS I and PS II.  go_component chloroplast|GO:0009507|18431481|IDA  go_process translation|GO:0006412|17139246|IMP  go_process chloroplast organization|GO:0009658|17139246|IMP  go_process de-etiolation|GO:0009704|17139246|IEP  go_function RNA binding|GO:0003723|17139246|IDA  product ATAB2; RNA binding  note ATAB2; FUNCTIONS IN: RNA binding; INVOLVED IN: de-etiolation, chloroplast organization, translation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1092 (InterPro:IPR009472); Has 321 Blast hits to 321 proteins in 71 species: Archae - 0; Bacteria - 146; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).  protein_id AT3G08010.1p  transcript_id AT3G08010.1  protein_id AT3G08010.1p  transcript_id AT3G08010.1  
At3g08020	chr3:002561503	0.0	C/2561503-2561534,2561075-2561426,2560804-2560981,2560673-2560722,2560359-2560451,2560189-2560277,2559959-2560037,2559748-2559830,2559508-2559586,2558620-2559301,2557996-2558476,2557753-2557894	AT3G08020.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT3G52100.1); Has 2063 Blast hits to 1961 proteins in 124 species: Archae - 0; Bacteria - 10; Metazoa - 1699; Fungi - 54; Plants - 101; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink).  protein_id AT3G08020.1p  transcript_id AT3G08020.1  protein_id AT3G08020.1p  transcript_id AT3G08020.1  
At3g08030	chr3:002564191	0.0	W/2564191-2564269,2564470-2564967,2565299-2565819	AT3G08030.1  CDS  go_component cell wall|GO:0005618|15593128|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41800.1); Has 178 Blast hits to 157 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 176; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G08030.1p  transcript_id AT3G08030.1  protein_id AT3G08030.1p  transcript_id AT3G08030.1  
At3g08030	chr3:002564517	0.0	W/2564517-2564967,2565299-2565819	AT3G08030.2  CDS  go_component cell wall|GO:0005618|15593128|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41800.1); Has 158 Blast hits to 154 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 158; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G08030.2p  transcript_id AT3G08030.2  protein_id AT3G08030.2p  transcript_id AT3G08030.2  
At3g08040	chr3:002569324	0.0	C/2569324-2569397,2568868-2569238,2568573-2568739,2568354-2568489,2568175-2568271,2567922-2568022,2567512-2567675,2567350-2567421,2567148-2567264,2566962-2567057,2566731-2566852,2566593-2566656	AT3G08040.1  CDS  gene_syn FERRIC REDUCTASE DEFECTIVE 3, FRD3, MAN1, MANGANESE ACCUMULATOR 1  gene FRD3  function Encodes a member of the MATE (multidrug and toxin efflux family), expressed in roots but not shoots. Mutants accumulate excess iron, manganese and zinc, and express root Fe(III) chelatase activity even under iron sufficiency conditions. FRD3 is likely to function in root xylem loading of an iron chelator or other factor necessary for efficient iron uptake out of the xylem or apoplastic space and into leaf cells.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020||ISS  go_process cellular iron ion homeostasis|GO:0006879|12172022|IMP  go_function transporter activity|GO:0005215|12172022|ISS  go_function antiporter activity|GO:0015297||ISS  product FRD3 (FERRIC REDUCTASE DEFECTIVE 3); antiporter/ transporter  note FERRIC REDUCTASE DEFECTIVE 3 (FRD3); FUNCTIONS IN: antiporter activity, transporter activity; INVOLVED IN: cellular iron ion homeostasis; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G51340.2); Has 9116 Blast hits to 9002 proteins in 1167 species: Archae - 208; Bacteria - 5981; Metazoa - 97; Fungi - 100; Plants - 188; Viruses - 0; Other Eukaryotes - 2542 (source: NCBI BLink).  protein_id AT3G08040.1p  transcript_id AT3G08040.1  protein_id AT3G08040.1p  transcript_id AT3G08040.1  
At3g08040	chr3:002569324	0.0	C/2569324-2569397,2568868-2569238,2568573-2568739,2568354-2568489,2568175-2568271,2567922-2568022,2567512-2567675,2567350-2567421,2567148-2567264,2566962-2567057,2566731-2566852,2566593-2566656	AT3G08040.2  CDS  gene_syn FERRIC REDUCTASE DEFECTIVE 3, FRD3, MAN1, MANGANESE ACCUMULATOR 1  gene FRD3  function Encodes a member of the MATE (multidrug and toxin efflux family), expressed in roots but not shoots. Mutants accumulate excess iron, manganese and zinc, and express root Fe(III) chelatase activity even under iron sufficiency conditions. FRD3 is likely to function in root xylem loading of an iron chelator or other factor necessary for efficient iron uptake out of the xylem or apoplastic space and into leaf cells.  go_component membrane|GO:0016020||ISS  go_process cellular iron ion homeostasis|GO:0006879|12172022|IMP  go_function transporter activity|GO:0005215|12172022|ISS  go_function antiporter activity|GO:0015297||ISS  product FRD3 (FERRIC REDUCTASE DEFECTIVE 3); antiporter/ transporter  note FERRIC REDUCTASE DEFECTIVE 3 (FRD3); FUNCTIONS IN: antiporter activity, transporter activity; INVOLVED IN: cellular iron ion homeostasis; LOCATED IN: membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G51340.2).  protein_id AT3G08040.2p  transcript_id AT3G08040.2  protein_id AT3G08040.2p  transcript_id AT3G08040.2  
At3g08490	chr3:002574784	0.0	C/2574784-2575125,2574471-2574656,2574105-2574392	AT3G08490.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42860.1); Has 77 Blast hits to 76 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G08490.1p  transcript_id AT3G08490.1  protein_id AT3G08490.1p  transcript_id AT3G08490.1  
At3g08500	chr3:002577756	0.0	C/2577756-2578072,2576958-2577672	AT3G08500.1  CDS  gene_syn AtMYB83, MYB83, myb domain protein 83  gene MYB83  function Encodes a putative R2R3-type MYB transcription factor (MYB83).  go_process regulation of transcription, DNA-dependent|GO:0006355|11597504|ISS  go_function DNA binding|GO:0003677|11597504|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB83 (myb domain protein 83); DNA binding / transcription factor  note myb domain protein 83 (MYB83); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB46 (MYB DOMAIN PROTEIN 46); DNA binding / transcription factor (TAIR:AT5G12870.1); Has 6453 Blast hits to 6057 proteins in 368 species: Archae - 0; Bacteria - 0; Metazoa - 627; Fungi - 285; Plants - 3857; Viruses - 4; Other Eukaryotes - 1680 (source: NCBI BLink).  protein_id AT3G08500.1p  transcript_id AT3G08500.1  protein_id AT3G08500.1p  transcript_id AT3G08500.1  
At3g08505	chr3:002582033	0.0	C/2582033-2582043,2581823-2581910,2581069-2581745,2580902-2580971,2580726-2580814,2580603-2580639	AT3G08505.1  CDS  gene_syn T8G24.6  go_function nucleic acid binding|GO:0003676||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function nucleic acid binding|GO:0003676||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (CCCH-type/C3HC4-type RING finger) family protein  note zinc finger (CCCH-type/C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding, nucleic acid binding; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); Has 987 Blast hits to 956 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 507; Fungi - 189; Plants - 71; Viruses - 142; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT3G08505.1p  transcript_id AT3G08505.1  protein_id AT3G08505.1p  transcript_id AT3G08505.1  
At3g08505	chr3:002582033	0.0	C/2582033-2582043,2581823-2581910,2581069-2581745,2580902-2580971,2580726-2580814,2580603-2580639	AT3G08505.2  CDS  gene_syn T8G24.6  go_function nucleic acid binding|GO:0003676||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function nucleic acid binding|GO:0003676||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (CCCH-type/C3HC4-type RING finger) family protein  note zinc finger (CCCH-type/C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding, nucleic acid binding; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); Has 987 Blast hits to 956 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 507; Fungi - 189; Plants - 71; Viruses - 142; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT3G08505.2p  transcript_id AT3G08505.2  protein_id AT3G08505.2p  transcript_id AT3G08505.2  
At3g08510	chr3:002585257	0.0	C/2585257-2585556,2584552-2584748,2584328-2584463,2584005-2584241,2583701-2583924,2583495-2583612,2583199-2583351,2582626-2582919	AT3G08510.3  CDS  gene_syn ATPLC2, PHOSPHOLIPASE C 2  gene ATPLC2  function Phosphoinositide-specific phospholipase C (PI-PLC), catalyzes hydrolysis of phosphatidylinositol 4,5-bisphosphate into inositol 1,4,5-trisphosphate and diacylglycerol.  go_process lipid metabolic process|GO:0006629||IEA  go_process signal transduction|GO:0007165||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_process signal transduction|GO:0007165||ISS  go_function phospholipase C activity|GO:0004629|9177324|TAS  product ATPLC2 (PHOSPHOLIPASE C 2); phospholipase C  note PHOSPHOLIPASE C 2 (ATPLC2); FUNCTIONS IN: phospholipase C activity; INVOLVED IN: signal transduction, intracellular signaling cascade, lipid metabolic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphoinositol-specific, EF-hand-like (InterPro:IPR015359), Phospholipase C, phosphatidylinositol-specific , X region (InterPro:IPR000909), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phospholipase C, phosphoinositol-specific, C-terminal (PLC) (InterPro:IPR001192), Phospholipase C, phosphatidylinositol-specific, Y domain (InterPro:IPR001711), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: phosphoinositide-specific phospholipase C, putative (TAIR:AT3G55940.1).  protein_id AT3G08510.3p  transcript_id AT3G08510.3  protein_id AT3G08510.3p  transcript_id AT3G08510.3  
At3g08510	chr3:002585257	0.0	C/2585257-2585556,2584552-2584748,2584328-2584463,2584005-2584241,2583701-2583924,2583495-2583612,2583199-2583351,2583030-2583116,2582626-2582919	AT3G08510.1  CDS  gene_syn ATPLC2, PHOSPHOLIPASE C 2  gene ATPLC2  function Phosphoinositide-specific phospholipase C (PI-PLC), catalyzes hydrolysis of phosphatidylinositol 4,5-bisphosphate into inositol 1,4,5-trisphosphate and diacylglycerol.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_process signal transduction|GO:0007165||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_process signal transduction|GO:0007165||ISS  go_function phospholipase C activity|GO:0004629|9177324|TAS  product ATPLC2 (PHOSPHOLIPASE C 2); phospholipase C  note PHOSPHOLIPASE C 2 (ATPLC2); FUNCTIONS IN: phospholipase C activity; INVOLVED IN: signal transduction, intracellular signaling cascade, lipid metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphoinositol-specific, EF-hand-like (InterPro:IPR015359), Phospholipase C, phosphatidylinositol-specific , X region (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phospholipase C, phosphoinositol-specific, C-terminal (PLC) (InterPro:IPR001192), C2 calcium-dependent membrane targeting (InterPro:IPR000008), Phospholipase C, phosphatidylinositol-specific, Y domain (InterPro:IPR001711); BEST Arabidopsis thaliana protein match is: phosphoinositide-specific phospholipase C, putative (TAIR:AT3G55940.1); Has 1990 Blast hits to 1583 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 1394; Fungi - 257; Plants - 163; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).  protein_id AT3G08510.1p  transcript_id AT3G08510.1  protein_id AT3G08510.1p  transcript_id AT3G08510.1  
At3g08510	chr3:002585257	0.0	C/2585257-2585556,2584552-2584748,2584328-2584463,2584005-2584241,2583701-2583924,2583495-2583612,2583199-2583351,2583030-2583116,2582626-2582919	AT3G08510.2  CDS  gene_syn ATPLC2, PHOSPHOLIPASE C 2  gene ATPLC2  function Phosphoinositide-specific phospholipase C (PI-PLC), catalyzes hydrolysis of phosphatidylinositol 4,5-bisphosphate into inositol 1,4,5-trisphosphate and diacylglycerol.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_process signal transduction|GO:0007165||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_process signal transduction|GO:0007165||ISS  go_function phospholipase C activity|GO:0004629|9177324|TAS  product ATPLC2 (PHOSPHOLIPASE C 2); phospholipase C  note PHOSPHOLIPASE C 2 (ATPLC2); FUNCTIONS IN: phospholipase C activity; INVOLVED IN: signal transduction, intracellular signaling cascade, lipid metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphoinositol-specific, EF-hand-like (InterPro:IPR015359), Phospholipase C, phosphatidylinositol-specific , X region (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phospholipase C, phosphoinositol-specific, C-terminal (PLC) (InterPro:IPR001192), C2 calcium-dependent membrane targeting (InterPro:IPR000008), Phospholipase C, phosphatidylinositol-specific, Y domain (InterPro:IPR001711); BEST Arabidopsis thaliana protein match is: phosphoinositide-specific phospholipase C, putative (TAIR:AT3G55940.1); Has 1990 Blast hits to 1583 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 1394; Fungi - 257; Plants - 163; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).  protein_id AT3G08510.2p  transcript_id AT3G08510.2  protein_id AT3G08510.2p  transcript_id AT3G08510.2  
At3g08520	chr3:002586032	0.0	W/2586032-2586043,2586141-2586206	AT3G08520.1  CDS  gene_syn T8G24.5  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L41 (RPL41D)  note 60S ribosomal protein L41 (RPL41D); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, ribosome; CONTAINS InterPro DOMAIN/s: Ribosomal protein L41 (InterPro:IPR007836); Has 170 Blast hits to 170 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 77; Fungi - 35; Plants - 49; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G08520.1p  transcript_id AT3G08520.1  protein_id AT3G08520.1p  transcript_id AT3G08520.1  
At3g08530	chr3:002595367	0.0	C/2595367-2595411,2594810-2595014,2594615-2594703,2594419-2594497,2594216-2594343,2594015-2594113,2593826-2593934,2593639-2593718,2593328-2593555,2593176-2593241,2592932-2593048,2592641-2592838,2592441-2592557,2592285-2592344,2592006-2592092,2591797-2591880,2591574-2591708,2591423-2591485,2591238-2591342,2591057-2591169,2590711-2590963,2590490-2590626,2590127-2590405,2589039-2590041,2588431-2588916,2588176-2588346,2587888-2588073,2587649-2587771,2587425-2587535,2587171-2587326	AT3G08530.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function structural molecule activity|GO:0005198||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function structural molecule activity|GO:0005198||ISS  product clathrin heavy chain, putative  note clathrin heavy chain, putative; FUNCTIONS IN: protein binding, structural molecule activity, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: plasma membrane, chloroplast, membrane; EXPRESSED IN: guard cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Clathrin, heavy chain (InterPro:IPR016341), Clathrin, heavy chain, linker and propeller (InterPro:IPR016025), Tetratricopeptide-like helical (InterPro:IPR011990), Clathrin, heavy chain, propeller, N-terminal (InterPro:IPR001473), Clathrin, heavy chain, linker, core motif (InterPro:IPR015348), Armadillo-type fold (InterPro:IPR016024), Clathrin, heavy chain/VPS, 7-fold repeat (InterPro:IPR000547); BEST Arabidopsis thaliana protein match is: clathrin heavy chain, putative (TAIR:AT3G11130.1); Has 1212 Blast hits to 1102 proteins in 356 species: Archae - 0; Bacteria - 29; Metazoa - 727; Fungi - 112; Plants - 61; Viruses - 0; Other Eukaryotes - 283 (source: NCBI BLink).  protein_id AT3G08530.1p  transcript_id AT3G08530.1  protein_id AT3G08530.1p  transcript_id AT3G08530.1  
At3g08550	chr3:002596513	0.0	W/2596513-2596899,2597144-2597293,2597431-2597483,2597642-2597750,2597840-2597974,2598095-2598139,2598240-2598427,2598634-2598775,2598883-2598929,2599059-2599146,2599258-2599515	AT3G08550.1  CDS  gene_syn ABA INSENSITIVE 8, ABI8, ELD1, ELONGATION DEFECTIVE 1, KOB1, KOBITO  gene KOB1  function mutant is Dwarfed and shows defects in cell elongation; Cellulose deficient; Plasma Membrane Protein  go_component cytoplasm|GO:0005737|14742875|IDA  go_component plasma membrane|GO:0005886|12215501|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|ISS  go_process response to abscisic acid stimulus|GO:0009737|14742875|IMP  go_process response to glucose stimulus|GO:0009749|14742875|IMP  go_process unidimensional cell growth|GO:0009826|10859181|IMP  go_process plant-type cell wall modification during multidimensional cell growth|GO:0009831|12215501|IMP  go_process cellulose biosynthetic process|GO:0030244|12215501|IMP  go_function molecular_function|GO:0003674||ND  product KOB1 (KOBITO)  note KOBITO (KOB1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cellulose biosynthetic process, response to abscisic acid stimulus, plant-type cell wall modification during multidimensional cell growth, unidimensional cell growth, response to glucose stimulus; LOCATED IN: chloroplast thylakoid lumen, plasma membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57200.1); Has 49 Blast hits to 49 proteins in 18 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G08550.1p  transcript_id AT3G08550.1  protein_id AT3G08550.1p  transcript_id AT3G08550.1  
At3g08560	chr3:002600130	0.0	W/2600130-2600332,2600420-2600576,2600648-2600850,2601681-2601780,2601863-2601907	AT3G08560.1  CDS  gene_syn VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 2, VHA-E2  gene VHA-E2  go_component vacuole|GO:0005773|15215502|IDA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_function proton-transporting ATPase activity, rotational mechanism|GO:0046961||IEA  go_component mitochondrial proton-transporting ATP synthase complex|GO:0005753||ISS  go_process ATP synthesis coupled proton transport|GO:0015986||ISS  go_function hydrogen-exporting ATPase activity, phosphorylative mechanism|GO:0008553||ISS  product VHA-E2 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 2); hydrogen-exporting ATPase, phosphorylative mechanism / proton-transporting ATPase, rotational mechanism  note VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 2 (VHA-E2); FUNCTIONS IN: hydrogen-exporting ATPase activity, phosphorylative mechanism, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: vacuole, mitochondrial proton-transporting ATP synthase complex; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, vegetative cell; EXPRESSED DURING: 4 anthesis, pollen developmental stages, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, V1/A1 complex, subunit E (InterPro:IPR002842); BEST Arabidopsis thaliana protein match is: TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1); proton-transporting ATPase, rotational mechanism (TAIR:AT4G11150.1); Has 558 Blast hits to 556 proteins in 209 species: Archae - 49; Bacteria - 10; Metazoa - 198; Fungi - 93; Plants - 85; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).  protein_id AT3G08560.1p  transcript_id AT3G08560.1  protein_id AT3G08560.1p  transcript_id AT3G08560.1  
At3g08570	chr3:002604327	0.0	C/2604327-2604412,2604138-2604204,2602894-2604057,2602258-2602794	AT3G08570.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process response to light stimulus|GO:0009416||IEA  go_function signal transducer activity|GO:0004871||IEA  go_function protein binding|GO:0005515||IEA  go_process response to light stimulus|GO:0009416||ISS  go_function signal transducer activity|GO:0004871||ISS  product protein binding / signal transducer  note protein binding / signal transducer; FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: phototropic-responsive protein, putative (TAIR:AT3G08660.1); Has 504 Blast hits to 490 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 70; Fungi - 0; Plants - 434; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G08570.1p  transcript_id AT3G08570.1  protein_id AT3G08570.1p  transcript_id AT3G08570.1  
At3g08580	chr3:002606557	0.0	C/2606557-2607030,2606099-2606473,2605706-2606002	AT3G08580.1  CDS  gene_syn AAC1, ADP/ATP CARRIER 1  gene AAC1  function mitochondrial ADP/ATP carrier  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component mitochondrion|GO:0005739|15276431|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial envelope|GO:0005740|12084057|TAS  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process purine nucleotide transport|GO:0015865|12084057|IDA  go_function ATP:ADP antiporter activity|GO:0005471|12084057|IDA  go_function ATP:ADP antiporter activity|GO:0005471||ISS  go_function binding|GO:0005488||ISS  product AAC1 (ADP/ATP CARRIER 1); ATP:ADP antiporter/ binding  note ADP/ATP CARRIER 1 (AAC1); FUNCTIONS IN: binding, ATP:ADP antiporter activity; INVOLVED IN: transport, purine nucleotide transport; LOCATED IN: in 10 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: AAC2 (ADP/ATP carrier 2); ATP:ADP antiporter/ binding (TAIR:AT5G13490.2); Has 14393 Blast hits to 9036 proteins in 348 species: Archae - 0; Bacteria - 0; Metazoa - 7687; Fungi - 3308; Plants - 2147; Viruses - 0; Other Eukaryotes - 1251 (source: NCBI BLink).  protein_id AT3G08580.1p  transcript_id AT3G08580.1  protein_id AT3G08580.1p  transcript_id AT3G08580.1  
At3g08580	chr3:002606557	0.0	C/2606557-2607030,2606099-2606473,2605706-2606002	AT3G08580.2  CDS  gene_syn AAC1, ADP/ATP CARRIER 1  gene AAC1  function mitochondrial ADP/ATP carrier  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component mitochondrion|GO:0005739|15276431|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial envelope|GO:0005740|12084057|TAS  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process purine nucleotide transport|GO:0015865|12084057|IDA  go_function ATP:ADP antiporter activity|GO:0005471|12084057|IDA  go_function ATP:ADP antiporter activity|GO:0005471||ISS  go_function binding|GO:0005488||ISS  product AAC1 (ADP/ATP CARRIER 1); ATP:ADP antiporter/ binding  note ADP/ATP CARRIER 1 (AAC1); FUNCTIONS IN: binding, ATP:ADP antiporter activity; INVOLVED IN: transport, purine nucleotide transport; LOCATED IN: in 10 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: AAC2 (ADP/ATP carrier 2); ATP:ADP antiporter/ binding (TAIR:AT5G13490.2); Has 14393 Blast hits to 9036 proteins in 348 species: Archae - 0; Bacteria - 0; Metazoa - 7687; Fungi - 3308; Plants - 2147; Viruses - 0; Other Eukaryotes - 1251 (source: NCBI BLink).  protein_id AT3G08580.2p  transcript_id AT3G08580.2  protein_id AT3G08580.2p  transcript_id AT3G08580.2  
At3g08590	chr3:002611073	0.0	C/2611073-2611237,2610699-2610977,2610412-2610615,2609896-2610320,2609401-2609593,2609226-2609321,2608981-2609136,2608683-2608847	AT3G08590.1  CDS  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function catalytic activity|GO:0003824||IEA  go_function phosphoglycerate mutase activity|GO:0004619||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_function 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity|GO:0046537||ISS  product 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative  note 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative; FUNCTIONS IN: manganese ion binding, phosphoglycerate mutase activity, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity, catalytic activity, metal ion binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, apoplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Alkaline phosphatase-like, alpha/beta/alpha (InterPro:IPR017849), Metalloenzyme (InterPro:IPR006124), BPG-independent PGAM, N-terminal (InterPro:IPR011258), Alkaline-phosphatase-like, core domain (InterPro:IPR017850), Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (InterPro:IPR005995); BEST Arabidopsis thaliana protein match is: 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative (TAIR:AT1G09780.1); Has 3366 Blast hits to 3363 proteins in 901 species: Archae - 36; Bacteria - 1673; Metazoa - 32; Fungi - 52; Plants - 344; Viruses - 0; Other Eukaryotes - 1229 (source: NCBI BLink).  protein_id AT3G08590.1p  transcript_id AT3G08590.1  protein_id AT3G08590.1p  transcript_id AT3G08590.1  
At3g08590	chr3:002611073	0.0	C/2611073-2611237,2610699-2610977,2610412-2610615,2609896-2610320,2609401-2609593,2609226-2609321,2608981-2609136,2608683-2608847	AT3G08590.2  CDS  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function catalytic activity|GO:0003824||IEA  go_function phosphoglycerate mutase activity|GO:0004619||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_function 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity|GO:0046537||ISS  product 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative  note 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative; FUNCTIONS IN: manganese ion binding, phosphoglycerate mutase activity, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity, catalytic activity, metal ion binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, apoplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Alkaline phosphatase-like, alpha/beta/alpha (InterPro:IPR017849), Metalloenzyme (InterPro:IPR006124), BPG-independent PGAM, N-terminal (InterPro:IPR011258), Alkaline-phosphatase-like, core domain (InterPro:IPR017850), Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (InterPro:IPR005995); BEST Arabidopsis thaliana protein match is: 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative (TAIR:AT1G09780.1); Has 3366 Blast hits to 3363 proteins in 901 species: Archae - 36; Bacteria - 1673; Metazoa - 32; Fungi - 52; Plants - 344; Viruses - 0; Other Eukaryotes - 1229 (source: NCBI BLink).  protein_id AT3G08590.2p  transcript_id AT3G08590.2  protein_id AT3G08590.2p  transcript_id AT3G08590.2  
At3g08600	chr3:002612646	0.0	W/2612646-2613596	AT3G08600.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1191 (InterPro:IPR010605); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22900.1); Has 62 Blast hits to 62 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G08600.1p  transcript_id AT3G08600.1  protein_id AT3G08600.1p  transcript_id AT3G08600.1  
At3g08610	chr3:002616661	0.0	C/2616661-2616768,2616435-2616524	AT3G08610.1  CDS  go_component mitochondrion|GO:0005739|12837548|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, respiratory chain complex I; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 26 Blast hits to 26 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G08610.1p  transcript_id AT3G08610.1  protein_id AT3G08610.1p  transcript_id AT3G08610.1  
At3g08620	chr3:002617925	0.0	W/2617925-2618010,2618097-2618185,2618593-2618744,2619247-2619363,2619441-2619557,2619644-2619787,2620168-2620314	AT3G08620.1  CDS  go_function RNA binding|GO:0003723||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product KH domain-containing protein  note KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT2G38610.2); Has 1024 Blast hits to 1023 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 709; Fungi - 97; Plants - 153; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT3G08620.1p  transcript_id AT3G08620.1  protein_id AT3G08620.1p  transcript_id AT3G08620.1  
At3g08630	chr3:002620943	0.0	W/2620943-2621962	AT3G08630.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: alphavirus core protein family (TAIR:AT3G08640.1); Has 3471 Blast hits to 1913 proteins in 226 species: Archae - 0; Bacteria - 450; Metazoa - 1700; Fungi - 130; Plants - 787; Viruses - 19; Other Eukaryotes - 385 (source: NCBI BLink).  protein_id AT3G08630.1p  transcript_id AT3G08630.1  protein_id AT3G08630.1p  transcript_id AT3G08630.1  
At3g08636	chr3:002622666	0.0	W/2622666-2622845	AT3G08636.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G08636.1p  transcript_id AT3G08636.1  protein_id AT3G08636.1p  transcript_id AT3G08636.1  
At3g08640	chr3:002622992	0.0	W/2622992-2624005	AT3G08640.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product alphavirus core protein family  note alphavirus core protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G08630.1); Has 10912 Blast hits to 4701 proteins in 450 species: Archae - 4; Bacteria - 2405; Metazoa - 4145; Fungi - 556; Plants - 2369; Viruses - 93; Other Eukaryotes - 1340 (source: NCBI BLink).  protein_id AT3G08640.1p  transcript_id AT3G08640.1  protein_id AT3G08640.1p  transcript_id AT3G08640.1  
At3g08650	chr3:002626421	0.0	C/2626421-2626879,2626008-2626292,2625796-2625924,2625602-2625699,2624694-2625510	AT3G08650.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process metal ion transport|GO:0030001||IEA  go_function metal ion transmembrane transporter activity|GO:0046873||IEA  go_component membrane|GO:0016020||ISS  go_process metal ion transport|GO:0030001||ISS  go_function metal ion transmembrane transporter activity|GO:0046873||ISS  product metal transporter family protein  note metal transporter family protein; FUNCTIONS IN: metal ion transmembrane transporter activity; INVOLVED IN: metal ion transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: metal transporter family protein (TAIR:AT3G20870.1); Has 2521 Blast hits to 2122 proteins in 582 species: Archae - 80; Bacteria - 1400; Metazoa - 567; Fungi - 4; Plants - 77; Viruses - 0; Other Eukaryotes - 393 (source: NCBI BLink).  protein_id AT3G08650.1p  transcript_id AT3G08650.1  protein_id AT3G08650.1p  transcript_id AT3G08650.1  
At3g08650	chr3:002627261	0.0	C/2627261-2627308,2626421-2626903,2626008-2626292,2625796-2625924,2625602-2625699,2624694-2625510	AT3G08650.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process metal ion transport|GO:0030001||IEA  go_function metal ion transmembrane transporter activity|GO:0046873||IEA  go_component membrane|GO:0016020||ISS  go_process metal ion transport|GO:0030001||ISS  go_function metal ion transmembrane transporter activity|GO:0046873||ISS  product metal transporter family protein  note metal transporter family protein; FUNCTIONS IN: metal ion transmembrane transporter activity; INVOLVED IN: metal ion transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: metal transporter family protein (TAIR:AT3G20870.1); Has 2522 Blast hits to 2122 proteins in 582 species: Archae - 80; Bacteria - 1400; Metazoa - 567; Fungi - 4; Plants - 77; Viruses - 0; Other Eukaryotes - 394 (source: NCBI BLink).  protein_id AT3G08650.2p  transcript_id AT3G08650.2  protein_id AT3G08650.2p  transcript_id AT3G08650.2  
At3g08660	chr3:002631130	0.0	W/2631130-2631215,2631334-2631400,2631493-2632584,2632663-2633166	AT3G08660.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process response to light stimulus|GO:0009416||IEA  go_function signal transducer activity|GO:0004871||IEA  go_function protein binding|GO:0005515||IEA  go_process response to light stimulus|GO:0009416||ISS  go_function signal transducer activity|GO:0004871||ISS  product phototropic-responsive protein, putative  note phototropic-responsive protein, putative; FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: response to light stimulus, N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: protein binding / signal transducer (TAIR:AT3G08570.1); Has 490 Blast hits to 467 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 0; Plants - 444; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G08660.1p  transcript_id AT3G08660.1  protein_id AT3G08660.1p  transcript_id AT3G08660.1  
At3g08670	chr3:002633946	0.0	W/2633946-2634141,2634531-2634633,2634882-2634990,2635160-2636098,2636180-2636536	AT3G08670.1  CDS  go_process response to oxidative stress|GO:0006979|18614705|IMP  product unknown protein  note unknown protein; INVOLVED IN: response to oxidative stress; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51540.1); Has 42170 Blast hits to 24550 proteins in 1008 species: Archae - 36; Bacteria - 4261; Metazoa - 16862; Fungi - 10439; Plants - 1834; Viruses - 857; Other Eukaryotes - 7881 (source: NCBI BLink).  protein_id AT3G08670.1p  transcript_id AT3G08670.1  protein_id AT3G08670.1p  transcript_id AT3G08670.1  
At3g08680	chr3:002638591	0.0	W/2638591-2639872,2639950-2640590	AT3G08680.1  CDS  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT5G58300.2); Has 86665 Blast hits to 68248 proteins in 2030 species: Archae - 34; Bacteria - 5383; Metazoa - 28963; Fungi - 4621; Plants - 36049; Viruses - 327; Other Eukaryotes - 11288 (source: NCBI BLink).  protein_id AT3G08680.1p  transcript_id AT3G08680.1  protein_id AT3G08680.1p  transcript_id AT3G08680.1  
At3g08680	chr3:002638591	0.0	W/2638591-2639872,2639950-2640590	AT3G08680.2  CDS  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT5G58300.2); Has 86665 Blast hits to 68248 proteins in 2030 species: Archae - 34; Bacteria - 5383; Metazoa - 28963; Fungi - 4621; Plants - 36049; Viruses - 327; Other Eukaryotes - 11288 (source: NCBI BLink).  protein_id AT3G08680.2p  transcript_id AT3G08680.2  protein_id AT3G08680.2p  transcript_id AT3G08680.2  
At3g08690	chr3:002641487	0.0	W/2641487-2641556,2641925-2642052,2642135-2642239,2642346-2642489	AT3G08690.1  CDS  gene_syn ATUBC11, UBC11, UBIQUITIN-CONJUGATING ENZYME 11  gene UBC11  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC11 (UBIQUITIN-CONJUGATING ENZYME 11); ubiquitin-protein ligase  note UBIQUITIN-CONJUGATING ENZYME 11 (UBC11); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC10 (ubiquitin-conjugating enzyme 10); ubiquitin-protein ligase (TAIR:AT5G53300.2); Has 8019 Blast hits to 7990 proteins in 310 species: Archae - 0; Bacteria - 0; Metazoa - 3910; Fungi - 1542; Plants - 1146; Viruses - 22; Other Eukaryotes - 1399 (source: NCBI BLink).  protein_id AT3G08690.1p  transcript_id AT3G08690.1  protein_id AT3G08690.1p  transcript_id AT3G08690.1  
At3g08700	chr3:002643482	0.0	W/2643482-2643551,2643961-2644091,2644183-2644287,2644402-2644545	AT3G08700.1  CDS  gene_syn UBC12, ubiquitin-conjugating enzyme 12  gene UBC12  go_process post-translational protein modification|GO:0043687||IEA  go_process regulation of protein metabolic process|GO:0051246||IEA  go_function small conjugating protein ligase activity|GO:0019787||IEA  go_component cellular_component|GO:0005575||ND  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC12 (ubiquitin-conjugating enzyme 12); small conjugating protein ligase/ ubiquitin-protein ligase  note ubiquitin-conjugating enzyme 12 (UBC12); FUNCTIONS IN: ubiquitin-protein ligase activity, small conjugating protein ligase activity; INVOLVED IN: regulation of protein metabolic process, post-translational protein modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, 4 anthesis, LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC11 (UBIQUITIN-CONJUGATING ENZYME 11); ubiquitin-protein ligase (TAIR:AT3G08690.1); Has 7640 Blast hits to 7631 proteins in 310 species: Archae - 0; Bacteria - 0; Metazoa - 3623; Fungi - 1480; Plants - 1166; Viruses - 22; Other Eukaryotes - 1349 (source: NCBI BLink).  protein_id AT3G08700.1p  transcript_id AT3G08700.1  protein_id AT3G08700.1p  transcript_id AT3G08700.1  
At3g08710	chr3:002645590	0.0	W/2645590-2645610,2645722-2645841,2645935-2646057,2646146-2646304	AT3G08710.1  CDS  gene_syn ATH9, thioredoxin H-type 9  gene ATH9  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process cell redox homeostasis|GO:0045454||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  product ATH9 (thioredoxin H-type 9)  note thioredoxin H-type 9 (ATH9); INVOLVED IN: N-terminal protein myristoylation, cell redox homeostasis; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56420.1); Has 10582 Blast hits to 10520 proteins in 1668 species: Archae - 137; Bacteria - 4892; Metazoa - 1333; Fungi - 474; Plants - 859; Viruses - 3; Other Eukaryotes - 2884 (source: NCBI BLink).  protein_id AT3G08710.1p  transcript_id AT3G08710.1  protein_id AT3G08710.1p  transcript_id AT3G08710.1  
At3g08710	chr3:002645590	0.0	W/2645590-2645610,2645722-2645841,2645935-2646057,2646146-2646304	AT3G08710.2  CDS  gene_syn ATH9, thioredoxin H-type 9  gene ATH9  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process cell redox homeostasis|GO:0045454||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  product ATH9 (thioredoxin H-type 9)  note thioredoxin H-type 9 (ATH9); INVOLVED IN: cell redox homeostasis; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56420.1); Has 10582 Blast hits to 10520 proteins in 1668 species: Archae - 137; Bacteria - 4892; Metazoa - 1333; Fungi - 474; Plants - 859; Viruses - 3; Other Eukaryotes - 2884 (source: NCBI BLink).  protein_id AT3G08710.2p  transcript_id AT3G08710.2  protein_id AT3G08710.2p  transcript_id AT3G08710.2  
At3g08720	chr3:002649784	0.0	C/2649784-2650407,2649618-2649700,2649236-2649530,2649034-2649138,2648625-2648933	AT3G08720.1  CDS  gene_syn ARABIDOPSIS THALIANA PROTEIN KINASE 2, ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ATPK19, ATPK2, ATS6K2, Arabidopsis thaliana protein kinase 19, S6K2  gene S6K2  function Encodes a ribosomal-protein S6 kinase. Gene expression is induced by cold and salt (NaCl). Activation of AtS6k is regulated by 1-naphthylacetic acid and kinetin, at least in part, via a lipid kinase-dependent pathway. Phosphorylates specifically mammalian and plant S6 at 25 degrees C but not at 37 degrees C. Involved in translational up-regulation of ribosomal proteins.  go_component nucleus|GO:0005634|16377759|IDA  go_process protein amino acid phosphorylation|GO:0006468|9528776|IDA  go_process response to heat|GO:0009408|9528776|IEP  go_process response to cold|GO:0009409|7828736|IEP  go_process response to cold|GO:0009409|8570631|IEP  go_process response to salt stress|GO:0009651|7828736|IEP  go_process positive regulation of translation|GO:0045727|9528776|TAS  go_function protein kinase activity|GO:0004672|7912697|ISS  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301|9528776|IDA  go_function kinase activity|GO:0016301||ISS  product S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2); kinase/ protein kinase  note ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2 (S6K2); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: response to salt stress, positive regulation of translation, protein amino acid phosphorylation, response to cold, response to heat; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase, C-terminal (InterPro:IPR017892), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: PK1 (PROTEIN-SERINE KINASE 1); kinase/ protein binding / protein kinase/ protein serine/threonine kinase (TAIR:AT3G08730.1); Has 97429 Blast hits to 95784 proteins in 3164 species: Archae - 94; Bacteria - 8904; Metazoa - 41737; Fungi - 8903; Plants - 18650; Viruses - 511; Other Eukaryotes - 18630 (source: NCBI BLink).  protein_id AT3G08720.1p  transcript_id AT3G08720.1  protein_id AT3G08720.1p  transcript_id AT3G08720.1  
At3g08720	chr3:002649784	0.0	C/2649784-2650407,2649618-2649700,2649236-2649530,2649034-2649138,2648625-2648933	AT3G08720.2  CDS  gene_syn ARABIDOPSIS THALIANA PROTEIN KINASE 2, ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ATPK19, ATPK2, ATS6K2, Arabidopsis thaliana protein kinase 19, S6K2  gene S6K2  function Encodes a ribosomal-protein S6 kinase. Gene expression is induced by cold and salt (NaCl). Activation of AtS6k is regulated by 1-naphthylacetic acid and kinetin, at least in part, via a lipid kinase-dependent pathway. Phosphorylates specifically mammalian and plant S6 at 25 degrees C but not at 37 degrees C. Involved in translational up-regulation of ribosomal proteins.  go_component nucleus|GO:0005634|16377759|IDA  go_process protein amino acid phosphorylation|GO:0006468|9528776|IDA  go_process response to heat|GO:0009408|9528776|IEP  go_process response to cold|GO:0009409|7828736|IEP  go_process response to cold|GO:0009409|8570631|IEP  go_process response to salt stress|GO:0009651|7828736|IEP  go_process positive regulation of translation|GO:0045727|9528776|TAS  go_function protein kinase activity|GO:0004672|7912697|ISS  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301|9528776|IDA  go_function kinase activity|GO:0016301||ISS  product S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2); kinase/ protein kinase  note Arabidopsis thaliana protein kinase 19 (ATPK19); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: response to salt stress, positive regulation of translation, protein amino acid phosphorylation, response to cold, response to heat; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase, C-terminal (InterPro:IPR017892), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: PK1 (PROTEIN-SERINE KINASE 1); kinase/ protein binding / protein kinase/ protein serine/threonine kinase (TAIR:AT3G08730.1); Has 97429 Blast hits to 95784 proteins in 3164 species: Archae - 94; Bacteria - 8904; Metazoa - 41737; Fungi - 8903; Plants - 18650; Viruses - 511; Other Eukaryotes - 18630 (source: NCBI BLink).  protein_id AT3G08720.2p  transcript_id AT3G08720.2  protein_id AT3G08720.2p  transcript_id AT3G08720.2  
At3g08730	chr3:002652758	0.0	C/2652758-2653363,2652590-2652672,2652206-2652500,2652017-2652121,2651581-2651889	AT3G08730.1  CDS  gene_syn ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 1, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 6, ATPK1, ATPK6, ATS6K1, P70 RIBOSOMAL S6 KINASE, PK1, PK6, PROTEIN-SERINE KINASE, PROTEIN-SERINE KINASE 1, ROTEIN-SERINE KINASE 6, S6K1  gene PK1  function Encodes a protein-serine kinase that phosphorylates ribosomal protein in vitro. Activation of AtS6k is regulated by 1-naphthylacetic acid and kinetin, at least in part, via a lipid kinase-dependent pathway. Involved in translational up-regulation of ribosomal proteins. Phosphorylated by PDK1. Interacts with RAPTOR1, which in turn interacts with TOR. SPK6 activity is affected by osmotic stress, and plants overexpressing S6k1 are hypersensitive to osmotic stress. The gene is expressed in all tissues examined, with highest expression level detected in metabolically active tissues.  go_component cytoplasm|GO:0005737|16377759|IDA  go_process protein amino acid phosphorylation|GO:0006468|9528776|IDA  go_process response to osmotic stress|GO:0006970|16377759|IDA  go_process response to osmotic stress|GO:0006970|16377759|IMP  go_process response to cold|GO:0009409|7828736|IEP  go_process response to salt stress|GO:0009651|7828736|IEP  go_process positive regulation of translation|GO:0045727|9528776|TAS  go_function protein kinase activity|GO:0004672|7912697|ISS  go_function protein serine/threonine kinase activity|GO:0004674|8021267|IDA  go_function protein binding|GO:0005515|16377759|IPI  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301|9528776|IDA  go_function kinase activity|GO:0016301||ISS  product PK1 (PROTEIN-SERINE KINASE 1); kinase/ protein binding / protein kinase/ protein serine/threonine kinase  note PROTEIN-SERINE KINASE 1 (PK1); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity, kinase activity; INVOLVED IN: response to salt stress, positive regulation of translation, protein amino acid phosphorylation, response to cold, response to osmotic stress; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase, C-terminal (InterPro:IPR017892), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2); kinase/ protein kinase (TAIR:AT3G08720.2); Has 97596 Blast hits to 95935 proteins in 3182 species: Archae - 90; Bacteria - 8913; Metazoa - 41735; Fungi - 8926; Plants - 18698; Viruses - 535; Other Eukaryotes - 18699 (source: NCBI BLink).  protein_id AT3G08730.1p  transcript_id AT3G08730.1  protein_id AT3G08730.1p  transcript_id AT3G08730.1  
At3g08740	chr3:002656013	0.0	C/2656013-2656154,2655850-2655930,2655562-2655668,2655395-2655472,2655178-2655279,2655003-2655084,2654788-2654906	AT3G08740.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process translational elongation|GO:0006414||IEA  go_function translation elongation factor activity|GO:0003746||IEA  go_process translational elongation|GO:0006414||ISS  go_function translation elongation factor activity|GO:0003746||ISS  product elongation factor P (EF-P) family protein  note elongation factor P (EF-P) family protein; FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor P (InterPro:IPR011768), Translation elongation factor P/YeiP, conserved site (InterPro:IPR013852), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Translation elongation factor, KOW-like (InterPro:IPR013185), Translation protein SH3-like, subgroup (InterPro:IPR014722), Elongation factor P, C-terminal (InterPro:IPR015365), Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Translation elongation factor P/YeiP, central (InterPro:IPR001059); BEST Arabidopsis thaliana protein match is: elongation factor P (EF-P) family protein (TAIR:AT4G26310.1); Has 6860 Blast hits to 6860 proteins in 1429 species: Archae - 3; Bacteria - 4309; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 2510 (source: NCBI BLink).  protein_id AT3G08740.1p  transcript_id AT3G08740.1  protein_id AT3G08740.1p  transcript_id AT3G08740.1  
At3g08750	chr3:002656716	0.0	C/2656716-2657825	AT3G08750.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (FBX15) (TAIR:AT4G04690.1); Has 1194 Blast hits to 1181 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1190; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G08750.1p  transcript_id AT3G08750.1  protein_id AT3G08750.1p  transcript_id AT3G08750.1  
At3g08760	chr3:002659328	0.0	C/2659328-2659984,2658979-2659236,2658129-2658887	AT3G08760.1  CDS  gene_syn ATSIK  gene ATSIK  function Encodes an osmotic stress-inducible kinase that functions as a negative regulator of osmotic stress signaling in plants.  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product ATSIK; ATP binding / kinase/ protein kinase/ protein tyrosine kinase  note ATSIK; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT5G15080.1); Has 28400 Blast hits to 28080 proteins in 950 species: Archae - 3; Bacteria - 1312; Metazoa - 10442; Fungi - 878; Plants - 13186; Viruses - 136; Other Eukaryotes - 2443 (source: NCBI BLink).  protein_id AT3G08760.1p  transcript_id AT3G08760.1  protein_id AT3G08760.1p  transcript_id AT3G08760.1  
At3g08762	chr3:002661836	0.0	C/2661836-2662012	AT3G08762.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G08762.1p  transcript_id AT3G08762.1  protein_id AT3G08762.1p  transcript_id AT3G08762.1  
At3g08770	chr3:002664453	0.0	C/2664453-2664784,2664349-2664358	AT3G08770.1  CDS  gene_syn LIPID TRANSFER PROTEIN 6, LTP6  gene LTP6  function Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_function lipid binding|GO:0008289||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product LTP6; lipid binding  note LTP6; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: lipid transfer protein, putative (TAIR:AT5G01870.1); Has 837 Blast hits to 836 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 833; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G08770.1p  transcript_id AT3G08770.1  protein_id AT3G08770.1p  transcript_id AT3G08770.1  
At3g08780	chr3:002666514	0.0	C/2666514-2667452	AT3G08780.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, cultured cell; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; Has 94 Blast hits to 94 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 72; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G08780.2p  transcript_id AT3G08780.2  protein_id AT3G08780.2p  transcript_id AT3G08780.2  
At3g08780	chr3:002666562	0.0	C/2666562-2667452,2666376-2666426	AT3G08780.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, cultured cell; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; Has 94 Blast hits to 94 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 72; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G08780.1p  transcript_id AT3G08780.1  protein_id AT3G08780.1p  transcript_id AT3G08780.1  
At3g08790	chr3:002667881	0.0	W/2667881-2667981,2668252-2668330,2668562-2668660,2668752-2668865,2668966-2669111,2669196-2669277,2669374-2669459,2669558-2669722,2669942-2670360,2670469-2671001	AT3G08790.1  CDS  go_component intracellular|GO:0005622||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_component Golgi stack|GO:0005795||ISS  go_process intracellular protein transport|GO:0006886||ISS  go_process intra-Golgi vesicle-mediated transport|GO:0006891||ISS  go_function protein transporter activity|GO:0008565||ISS  product VHS domain-containing protein / GAT domain-containing protein  note VHS domain-containing protein / GAT domain-containing protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, intracellular; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), GAT (InterPro:IPR004152), VHS subgroup (InterPro:IPR018205), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: protein transporter (TAIR:AT4G32760.1); Has 2646 Blast hits to 2589 proteins in 190 species: Archae - 0; Bacteria - 15; Metazoa - 1085; Fungi - 496; Plants - 233; Viruses - 479; Other Eukaryotes - 338 (source: NCBI BLink).  protein_id AT3G08790.1p  transcript_id AT3G08790.1  protein_id AT3G08790.1p  transcript_id AT3G08790.1  
At3g08800	chr3:002671148	0.0	W/2671148-2671816,2671920-2672003,2672082-2672309,2672460-2672651,2672993-2673133,2673232-2673321,2673412-2673896,2673989-2674910	AT3G08800.1  CDS  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); Has 119 Blast hits to 117 proteins in 53 species: Archae - 0; Bacteria - 6; Metazoa - 93; Fungi - 2; Plants - 11; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT3G08800.1p  transcript_id AT3G08800.1  protein_id AT3G08800.1p  transcript_id AT3G08800.1  
At3g08810	chr3:002675631	0.0	C/2675631-2676662	AT3G08810.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT5G51250.1); Has 416 Blast hits to 404 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 415; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G08810.1p  transcript_id AT3G08810.1  protein_id AT3G08810.1p  transcript_id AT3G08810.1  
At3g08820	chr3:002677122	0.0	C/2677122-2679179	AT3G08820.1  CDS  gene_syn T16O11.25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, sperm cell, leaf whorl, embryo, seed; EXPRESSED DURING: D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G08070.1); Has 14523 Blast hits to 5220 proteins in 173 species: Archae - 0; Bacteria - 2; Metazoa - 142; Fungi - 53; Plants - 14018; Viruses - 0; Other Eukaryotes - 308 (source: NCBI BLink).  protein_id AT3G08820.1p  transcript_id AT3G08820.1  protein_id AT3G08820.1p  transcript_id AT3G08820.1  
At3g08840	chr3:002685840	0.0	C/2685840-2686157,2685653-2685724,2685520-2685563,2685315-2685426,2685148-2685219,2684945-2685007,2684725-2684802,2684526-2684618,2684248-2684367,2683819-2683902,2683388-2683597,2683233-2683280,2682611-2682856	AT3G08840.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process peptidoglycan biosynthetic process|GO:0009252||IEA  go_function catalytic activity|GO:0003824||IEA  go_function ATP binding|GO:0005524||IEA  go_function D-alanine-D-alanine ligase activity|GO:0008716||IEA  go_function D-alanine-D-alanine ligase activity|GO:0008716||ISS  product D-alanine--D-alanine ligase family  note D-alanine--D-alanine ligase family; FUNCTIONS IN: D-alanine-D-alanine ligase activity, catalytic activity, ATP binding; INVOLVED IN: peptidoglycan biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PreATP-grasp-like fold (InterPro:IPR016185), ATP-grasp fold (InterPro:IPR011761), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), D-alanine--D-alanine ligase, N-terminal (InterPro:IPR011127), Pre-ATP-grasp fold (InterPro:IPR013817); Has 5220 Blast hits to 5187 proteins in 1358 species: Archae - 6; Bacteria - 3509; Metazoa - 2; Fungi - 5; Plants - 33; Viruses - 0; Other Eukaryotes - 1665 (source: NCBI BLink).  protein_id AT3G08840.1p  transcript_id AT3G08840.1  protein_id AT3G08840.1p  transcript_id AT3G08840.1  
At3g08840	chr3:002685840	0.0	C/2685840-2686157,2685653-2685724,2685520-2685563,2685315-2685426,2685148-2685219,2684945-2685007,2684725-2684802,2684526-2684618,2684248-2684367,2683819-2683902,2683388-2683597,2683233-2683280,2682620-2682856,2682387-2682478,2681949-2682193,2681602-2681670,2681434-2681498,2681159-2681328,2681001-2681079,2680665-2680908,2680518-2680563,2680057-2680165,2679893-2679955,2679648-2679728	AT3G08840.2  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process peptidoglycan biosynthetic process|GO:0009252||IEA  go_function catalytic activity|GO:0003824||IEA  go_function ATP binding|GO:0005524||IEA  go_function D-alanine-D-alanine ligase activity|GO:0008716||IEA  go_function D-alanine-D-alanine ligase activity|GO:0008716||ISS  product D-alanine--D-alanine ligase family  note D-alanine--D-alanine ligase family; FUNCTIONS IN: D-alanine-D-alanine ligase activity, catalytic activity, ATP binding; INVOLVED IN: peptidoglycan biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PreATP-grasp-like fold (InterPro:IPR016185), ATP-grasp fold (InterPro:IPR011761), D-alanine--D-alanine ligase/VANA/B/C, conserved site (InterPro:IPR000291), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), D-alanine--D-alanine ligase, N-terminal (InterPro:IPR011127), Pre-ATP-grasp fold (InterPro:IPR013817); Has 9767 Blast hits to 5292 proteins in 1363 species: Archae - 6; Bacteria - 6725; Metazoa - 4; Fungi - 8; Plants - 38; Viruses - 0; Other Eukaryotes - 2986 (source: NCBI BLink).  protein_id AT3G08840.2p  transcript_id AT3G08840.2  protein_id AT3G08840.2p  transcript_id AT3G08840.2  
At3g08840	chr3:002685840	0.0	C/2685840-2686157,2685653-2685724,2685520-2685563,2685315-2685426,2685148-2685219,2684945-2685007,2684725-2684802,2684526-2684618,2684248-2684367,2683819-2683902,2683388-2683597,2683233-2683280,2682620-2682856,2682387-2682478,2681949-2682193,2681602-2681670,2681434-2681498,2681159-2681328,2681001-2681079,2680665-2680908,2680568-2680590	AT3G08840.3  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process peptidoglycan biosynthetic process|GO:0009252||IEA  go_function catalytic activity|GO:0003824||IEA  go_function ATP binding|GO:0005524||IEA  go_function D-alanine-D-alanine ligase activity|GO:0008716||IEA  go_function D-alanine-D-alanine ligase activity|GO:0008716||ISS  product D-alanine--D-alanine ligase family  note D-alanine--D-alanine ligase family; FUNCTIONS IN: D-alanine-D-alanine ligase activity, catalytic activity, ATP binding; INVOLVED IN: peptidoglycan biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PreATP-grasp-like fold (InterPro:IPR016185), ATP-grasp fold (InterPro:IPR011761), D-alanine--D-alanine ligase/VANA/B/C, conserved site (InterPro:IPR000291), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), D-alanine--D-alanine ligase, N-terminal (InterPro:IPR011127), Pre-ATP-grasp fold (InterPro:IPR013817); Has 9292 Blast hits to 5260 proteins in 1362 species: Archae - 6; Bacteria - 6429; Metazoa - 2; Fungi - 5; Plants - 38; Viruses - 0; Other Eukaryotes - 2812 (source: NCBI BLink).  protein_id AT3G08840.3p  transcript_id AT3G08840.3  protein_id AT3G08840.3p  transcript_id AT3G08840.3  
At3g08850	chr3:002694603	0.0	C/2694603-2694911,2694136-2694238,2693942-2694024,2693704-2693862,2693496-2693612,2693227-2693384,2692508-2692662,2692266-2692410,2692102-2692180,2691915-2692016,2691630-2691713,2691416-2691526,2690718-2691071,2690463-2690646,2689481-2690047,2689035-2689352,2688823-2688949,2688453-2688577,2688196-2688341,2687992-2688093,2687686-2687771,2687486-2687567,2686978-2687316	AT3G08850.1  CDS  gene_syn ATRAPTOR1B, RAPTOR1, RAPTOR1B  gene RAPTOR1  function Encodes one of two Arabidopsis RAPTOR/KOG1 homologs. RAPTOR proteins are binding partners of the target of rapamycin kinase that is present in all eukaryotes and play a central role in the stimulation of cell growth and metabolism in response to nutrients. Mutants show embryo lethal phenotype which occurs at pre-globular stage. May interact with TOR kinase in a rapamycin like signaling pathway. Interacts with TOR and S6K1 in vivo. Overexpression of RAPTOR1 rendered the S6K1 osmotic stress insensitive.  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process embryonic development ending in seed dormancy|GO:0009793|15607746|IMP  go_process cell growth|GO:0016049|15845148|IMP  go_function nucleotide binding|GO:0000166||ISS  go_function protein binding|GO:0005515|15720729|IPI  go_function protein binding|GO:0005515|16377759|IPI  product RAPTOR1; nucleotide binding / protein binding  note RAPTOR1; FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: embryonic development ending in seed dormancy, cell growth; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), WD40 repeat (InterPro:IPR001680), Regulatory associated protein of TOR (InterPro:IPR004083), WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: RAPTOR2 (RAPTOR2); binding / nucleotide binding (TAIR:AT5G01770.1); Has 5876 Blast hits to 4549 proteins in 265 species: Archae - 2; Bacteria - 1167; Metazoa - 2388; Fungi - 1043; Plants - 470; Viruses - 0; Other Eukaryotes - 806 (source: NCBI BLink).  protein_id AT3G08850.1p  transcript_id AT3G08850.1  protein_id AT3G08850.1p  transcript_id AT3G08850.1  
At3g08860	chr3:002698839	0.0	C/2698839-2699087,2698513-2698743,2698230-2698400,2697855-2697998,2697582-2697761,2697287-2697512,2697091-2697204,2696897-2696983,2696754-2696797	AT3G08860.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_function catalytic activity|GO:0003824||IEA  go_function transaminase activity|GO:0008483||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_function alanine-glyoxylate transaminase activity|GO:0008453||ISS  product alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putative  note alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putative; FUNCTIONS IN: pyridoxal phosphate binding, transaminase activity, catalytic activity, alanine-glyoxylate transaminase activity; LOCATED IN: mitochondrion; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase class-III (InterPro:IPR005814), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: AGT3 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 3); alanine-glyoxylate transaminase/ catalytic/ pyridoxal phosphate binding / transaminase (TAIR:AT2G38400.1); Has 24382 Blast hits to 24376 proteins in 1633 species: Archae - 419; Bacteria - 12473; Metazoa - 555; Fungi - 541; Plants - 228; Viruses - 14; Other Eukaryotes - 10152 (source: NCBI BLink).  protein_id AT3G08860.1p  transcript_id AT3G08860.1  protein_id AT3G08860.1p  transcript_id AT3G08860.1  
At3g08870	chr3:002700500	0.0	C/2700500-2702581	AT3G08870.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function kinase activity|GO:0016301||ISS  product lectin protein kinase, putative  note lectin protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: LECRKA4.2 (LECTIN RECEPTOR KINASE A4.1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ sugar binding (TAIR:AT5G01550.1); Has 91096 Blast hits to 89835 proteins in 3600 species: Archae - 60; Bacteria - 8123; Metazoa - 39570; Fungi - 7304; Plants - 20150; Viruses - 417; Other Eukaryotes - 15472 (source: NCBI BLink).  protein_id AT3G08870.1p  transcript_id AT3G08870.1  protein_id AT3G08870.1p  transcript_id AT3G08870.1  
At3g08880	chr3:002703169	0.0	W/2703169-2703346,2703447-2703588,2703680-2703781,2703870-2703943,2704056-2704165	AT3G08880.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01570.1); Has 114 Blast hits to 112 proteins in 41 species: Archae - 0; Bacteria - 19; Metazoa - 18; Fungi - 8; Plants - 18; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT3G08880.1p  transcript_id AT3G08880.1  protein_id AT3G08880.1p  transcript_id AT3G08880.1  
At3g08885	chr3:002705470	0.0	C/2705470-2706278	AT3G08885.1  pseudogenic_transcript  pseudo  gene_syn T16O11.18  note pseudogene, ferritin, similar to ferritin GB:S71265 (Arabidopsis thaliana); blastp match of 48% identity and 2.0e-29 P-value to SP|Q96540|FRI1_BRANA Ferritin 1, chloroplast precursor. (Rape) {Brassica napus}  
At3g08890	chr3:002706701	0.0	W/2706701-2706787,2707254-2707308,2707405-2707775	AT3G08890.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G37070.1); Has 268 Blast hits to 266 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 268; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G08890.1p  transcript_id AT3G08890.1  protein_id AT3G08890.1p  transcript_id AT3G08890.1  
At3g08890	chr3:002706701	0.0	W/2706701-2706787,2707254-2707308,2707405-2707775	AT3G08890.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G37070.1); Has 268 Blast hits to 266 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 268; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G08890.2p  transcript_id AT3G08890.2  protein_id AT3G08890.2p  transcript_id AT3G08890.2  
At3g08900	chr3:002709385	0.0	C/2709385-2709714,2709032-2709282,2708759-2708927,2708347-2708685	AT3G08900.1  CDS  gene_syn REVERSIBLY GLYCOSYLATED POLYPEPTIDE 3, RGP, RGP3  gene RGP3  function Encodes a reversible autoglycosylated protein peripherally associated with cell membranes. Highly expressed in roots ans suspension-cultured cells.  go_process cell wall organization|GO:0007047||IEA  go_process cellulose biosynthetic process|GO:0030244||IEA  go_function transferase activity, transferring hexosyl groups|GO:0016758||IEA  go_component membrane|GO:0016020|9536051|ISS  product RGP3 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 3); transferase, transferring hexosyl groups  note REVERSIBLY GLYCOSYLATED POLYPEPTIDE 3 (RGP3); FUNCTIONS IN: transferase activity, transferring hexosyl groups; INVOLVED IN: cellulose biosynthetic process, cell wall organization; LOCATED IN: membrane; EXPRESSED IN: leaf whorl, sepal, flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Alpha-1,4-glucan-protein synthase, UDP-forming (InterPro:IPR004901); BEST Arabidopsis thaliana protein match is: RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1); cellulose synthase (UDP-forming) (TAIR:AT3G02230.1); Has 146 Blast hits to 143 proteins in 32 species: Archae - 14; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 123; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G08900.1p  transcript_id AT3G08900.1  protein_id AT3G08900.1p  transcript_id AT3G08900.1  
At3g08910	chr3:002711647	0.0	C/2711647-2711811,2711109-2711473,2710402-2710843	AT3G08910.1  CDS  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock protein, putative  note DNAJ heat shock protein, putative; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock protein, putative (TAIR:AT5G01390.1); Has 19783 Blast hits to 19574 proteins in 2080 species: Archae - 123; Bacteria - 5876; Metazoa - 3781; Fungi - 1724; Plants - 1469; Viruses - 17; Other Eukaryotes - 6793 (source: NCBI BLink).  protein_id AT3G08910.1p  transcript_id AT3G08910.1  protein_id AT3G08910.1p  transcript_id AT3G08910.1  
At3g08920	chr3:002712274	0.0	W/2712274-2712713,2712913-2713117	AT3G08920.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product rhodanese-like domain-containing protein  note rhodanese-like domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: rhodanese-like domain-containing protein (TAIR:AT2G42220.1); Has 151 Blast hits to 151 proteins in 36 species: Archae - 0; Bacteria - 36; Metazoa - 1; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT3G08920.1p  transcript_id AT3G08920.1  protein_id AT3G08920.1p  transcript_id AT3G08920.1  
At3g08930	chr3:002713562	0.0	W/2713562-2713911,2714014-2714099,2714392-2714507,2714619-2714729,2714948-2715046,2715139-2715261,2715524-2715586,2715666-2715730,2715888-2715997,2716088-2716202,2716300-2716365,2716672-2716782,2716859-2716925,2717011-2717058	AT3G08930.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: LMBR1-like conserved region (InterPro:IPR006876); BEST Arabidopsis thaliana protein match is: LMBR1 integral membrane family protein (TAIR:AT5G01460.1); Has 250 Blast hits to 249 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 107; Fungi - 39; Plants - 31; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT3G08930.1p  transcript_id AT3G08930.1  protein_id AT3G08930.1p  transcript_id AT3G08930.1  
At3g08940	chr3:002717717	0.0	W/2717717-2718217,2718303-2718665	AT3G08940.2  CDS  gene_syn LHCB4.2, light harvesting complex PSII  gene LHCB4.2  function Lhcb4.2 protein (Lhcb4.2, protein involved in the light harvesting complex of photosystem II  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to blue light|GO:0009637|18820083|IEP  go_process response to red light|GO:0010114|18820083|IEP  go_process response to far red light|GO:0010218|18820083|IEP  go_function chlorophyll binding|GO:0016168||ISS  product LHCB4.2 (light harvesting complex PSII); chlorophyll binding  note light harvesting complex PSII (LHCB4.2); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: chlorophyll A-B binding protein CP29 (LHCB4) (TAIR:AT5G01530.1); Has 1755 Blast hits to 1685 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1507; Viruses - 0; Other Eukaryotes - 246 (source: NCBI BLink).  protein_id AT3G08940.2p  transcript_id AT3G08940.2  protein_id AT3G08940.2p  transcript_id AT3G08940.2  
At3g08940	chr3:002717717	0.0	W/2717717-2718400	AT3G08940.1  CDS  gene_syn LHCB4.2, light harvesting complex PSII  gene LHCB4.2  function Lhcb4.2 protein (Lhcb4.2, protein involved in the light harvesting complex of photosystem II  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to blue light|GO:0009637|18820083|IEP  go_process response to red light|GO:0010114|18820083|IEP  go_process response to far red light|GO:0010218|18820083|IEP  go_function chlorophyll binding|GO:0016168||ISS  product LHCB4.2 (light harvesting complex PSII); chlorophyll binding  note light harvesting complex PSII (LHCB4.2); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: chlorophyll A-B binding protein CP29 (LHCB4) (TAIR:AT5G01530.1); Has 854 Blast hits to 830 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 781; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT3G08940.1p  transcript_id AT3G08940.1  protein_id AT3G08940.1p  transcript_id AT3G08940.1  
At3g08943	chr3:002719494	0.0	C/2719494-2721911,2719198-2719393	AT3G08943.1  CDS  gene_syn T16O11.11  go_component nucleus|GO:0005634||IEA  go_component nuclear pore|GO:0005643||IEA  go_component cytoplasm|GO:0005737||IEA  go_process protein import into nucleus, docking|GO:0000059||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function binding|GO:0005488||IEA  go_function protein transporter activity|GO:0008565||IEA  product binding / protein transporter  note binding / protein transporter; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, cytoplasm; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding / protein transporter (TAIR:AT3G08947.1).  protein_id AT3G08943.1p  transcript_id AT3G08943.1  protein_id AT3G08943.1p  transcript_id AT3G08943.1  
At3g08947	chr3:002724007	0.0	W/2724007-2726425,2726521-2726722	AT3G08947.1  CDS  gene_syn T16O11.10  go_component nucleus|GO:0005634||IEA  go_component nuclear pore|GO:0005643||IEA  go_component cytoplasm|GO:0005737||IEA  go_process protein import into nucleus, docking|GO:0000059||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function binding|GO:0005488||IEA  go_function protein transporter activity|GO:0008565||IEA  product binding / protein transporter  note binding / protein transporter; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, cytoplasm; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding / protein transporter (TAIR:AT3G08943.1).  protein_id AT3G08947.1p  transcript_id AT3G08947.1  protein_id AT3G08947.1p  transcript_id AT3G08947.1  
At3g08950	chr3:002727285	0.0	W/2727285-2727440,2727524-2727736,2727836-2727926,2728362-2728574,2728654-2728743,2728815-2728947,2729181-2729289	AT3G08950.1  CDS  go_process copper ion transport|GO:0006825||IEA  go_process cellular copper ion homeostasis|GO:0006878||IEA  go_process respiratory chain complex IV assembly|GO:0008535||IEA  go_process cell redox homeostasis|GO:0045454||IEA  go_function copper ion binding|GO:0005507||IEA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  product electron transport SCO1/SenC family protein  note electron transport SCO1/SenC family protein; FUNCTIONS IN: copper ion binding; INVOLVED IN: copper ion transport, respiratory chain complex IV assembly, cellular copper ion homeostasis, cell redox homeostasis; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Synthesis of cytochrome c oxidase, Sco1/Sco2 (InterPro:IPR017276), Copper chaperone SCO1/SenC (InterPro:IPR003782), Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: electron transport SCO1/SenC family protein (TAIR:AT4G39740.1); Has 3037 Blast hits to 3037 proteins in 688 species: Archae - 11; Bacteria - 1550; Metazoa - 132; Fungi - 105; Plants - 35; Viruses - 0; Other Eukaryotes - 1204 (source: NCBI BLink).  protein_id AT3G08950.1p  transcript_id AT3G08950.1  protein_id AT3G08950.1p  transcript_id AT3G08950.1  
At3g08960	chr3:002736622	0.0	C/2736622-2736762,2736428-2736537,2736222-2736294,2736062-2736123,2735831-2735972,2735487-2735705,2735149-2735215,2734649-2735048,2734076-2734223,2733794-2733954,2733543-2733642,2733133-2733207,2732876-2733010,2732693-2732782,2732415-2732597,2732223-2732327,2731950-2732108,2731632-2731676,2731320-2731541,2730998-2731104,2730862-2730918,2730665-2730734,2730405-2730566	AT3G08960.1  CDS  go_component nucleus|GO:0005634||IEA  go_component nuclear pore|GO:0005643||IEA  go_component cytoplasm|GO:0005737||IEA  go_process protein import into nucleus, docking|GO:0000059||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function binding|GO:0005488||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component nucleus|GO:0005634||ISS  go_component nuclear pore|GO:0005643||ISS  go_component cytoplasm|GO:0005737||ISS  go_process protein import into nucleus, docking|GO:0000059||ISS  go_function protein transporter activity|GO:0008565||ISS  product binding / protein transporter  note binding / protein transporter; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding / protein transporter (TAIR:AT1G26170.1); Has 1034 Blast hits to 933 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 468; Fungi - 402; Plants - 81; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT3G08960.1p  transcript_id AT3G08960.1  protein_id AT3G08960.1p  transcript_id AT3G08960.1  
At3g08970	chr3:002737589	0.0	W/2737589-2737678,2737895-2737950,2738047-2738120,2738276-2738787,2738897-2739238,2739443-2739796,2739975-2740265	AT3G08970.1  CDS  gene_syn ATERDJ3A, THERMOSENSITIVE MALE STERILE 1, TMS1  gene ATERDJ3A  function J domain protein localized in ER lumen. Can compensate for the growth defect in jem1 scj1 mutant yeast. Also shows similarity to HSP40 proteins and is induced by heat stress. At high temperatures, mutant alleles are not transmitted through the pollen due to defects in pollen tube growth.  go_component endoplasmic reticulum lumen|GO:0005788|18718935|IDA  go_process protein folding|GO:0006457||ISS  go_process response to heat|GO:0009408|18980646|IMP  go_process pollen tube growth|GO:0009860|18980646|IMP  go_process cellular response to heat|GO:0034605|18980646|TAS  go_function oxidoreductase activity|GO:0016491|18980646|IDA  product ATERDJ3A; oxidoreductase  note ATERDJ3A; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: protein folding, response to heat, pollen tube growth, cellular response to heat; LOCATED IN: endoplasmic reticulum lumen; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Thioredoxin-like fold (InterPro:IPR012336), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT4G39960.1); Has 21770 Blast hits to 19970 proteins in 2050 species: Archae - 136; Bacteria - 5978; Metazoa - 6090; Fungi - 1865; Plants - 1947; Viruses - 17; Other Eukaryotes - 5737 (source: NCBI BLink).  protein_id AT3G08970.1p  transcript_id AT3G08970.1  protein_id AT3G08970.1p  transcript_id AT3G08970.1  
At3g08980	chr3:002741279	0.0	W/2741279-2741432,2741526-2741598,2742016-2742175,2742298-2742375	AT3G08980.1  CDS  gene_syn T16O11.6  go_component membrane|GO:0016020||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type peptidase activity|GO:0008236||IEA  go_component membrane|GO:0016020||ISS  go_process proteolysis|GO:0006508||ISS  go_function peptidase activity|GO:0008233||ISS  product signal peptidase I family protein  note signal peptidase I family protein; FUNCTIONS IN: serine-type peptidase activity, peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S24, S26A and S26B, C-terminal (InterPro:IPR011056), Peptidase S24, S26A, S26B and S26C (InterPro:IPR015927), Peptidase S26A, signal peptidase I (InterPro:IPR000223), Peptidase S26A (InterPro:IPR014037); BEST Arabidopsis thaliana protein match is: peptidase/ serine-type peptidase (TAIR:AT1G29960.1); Has 2038 Blast hits to 2037 proteins in 521 species: Archae - 0; Bacteria - 1182; Metazoa - 207; Fungi - 143; Plants - 131; Viruses - 0; Other Eukaryotes - 375 (source: NCBI BLink).  protein_id AT3G08980.1p  transcript_id AT3G08980.1  protein_id AT3G08980.1p  transcript_id AT3G08980.1  
At3g08990	chr3:002743590	0.0	W/2743590-2743685,2744164-2744207,2744293-2744401,2744480-2744535,2744628-2744709	AT3G08990.1  CDS  gene_syn T16O11.5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product yippee family protein  note yippee family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Yippee-like protein (InterPro:IPR004910); BEST Arabidopsis thaliana protein match is: yippee family protein (TAIR:AT2G40110.1); Has 694 Blast hits to 694 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 400; Fungi - 131; Plants - 111; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT3G08990.1p  transcript_id AT3G08990.1  protein_id AT3G08990.1p  transcript_id AT3G08990.1  
At3g09000	chr3:002746014	0.0	W/2746014-2746104,2746191-2746347,2746635-2746740,2746856-2747863,2748063-2748326	AT3G09000.1  CDS  gene_syn T16O11.4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product proline-rich family protein  note proline-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40070.2); Has 63160 Blast hits to 33955 proteins in 1341 species: Archae - 167; Bacteria - 7271; Metazoa - 25356; Fungi - 13055; Plants - 2649; Viruses - 1731; Other Eukaryotes - 12931 (source: NCBI BLink).  protein_id AT3G09000.1p  transcript_id AT3G09000.1  protein_id AT3G09000.1p  transcript_id AT3G09000.1  
At3g09010	chr3:002750285	0.0	W/2750285-2750357,2750582-2750694,2750784-2750994,2751076-2751313,2751392-2751542,2751691-2752086	AT3G09010.1  CDS  gene_syn T16O11.3  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G16670.1); Has 85198 Blast hits to 84212 proteins in 3264 species: Archae - 56; Bacteria - 7432; Metazoa - 37605; Fungi - 6636; Plants - 18795; Viruses - 359; Other Eukaryotes - 14315 (source: NCBI BLink).  protein_id AT3G09010.1p  transcript_id AT3G09010.1  protein_id AT3G09010.1p  transcript_id AT3G09010.1  
At3g09020	chr3:002753307	0.0	W/2753307-2754542	AT3G09020.1  CDS  go_component Golgi stack|GO:0005795||IEA  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing protein  note alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi stack; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Alpha 1,4-glycosyltransferase conserved region (InterPro:IPR007652), Glycosyltransferase sugar-binding region containing DXD motif (InterPro:IPR007577); BEST Arabidopsis thaliana protein match is: alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing protein (TAIR:AT5G01250.1); Has 265 Blast hits to 264 proteins in 48 species: Archae - 0; Bacteria - 8; Metazoa - 183; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT3G09020.1p  transcript_id AT3G09020.1  protein_id AT3G09020.1p  transcript_id AT3G09020.1  
At3g09030	chr3:002754841	0.0	W/2754841-2756223	AT3G09030.1  CDS  gene_syn T16O11.1  go_component voltage-gated potassium channel complex|GO:0008076||IEA  go_component membrane|GO:0016020||IEA  go_process potassium ion transport|GO:0006813||IEA  go_function voltage-gated potassium channel activity|GO:0005249||IEA  go_function protein binding|GO:0005515||IEA  go_component voltage-gated potassium channel complex|GO:0008076||ISS  go_component membrane|GO:0016020||ISS  go_process potassium ion transport|GO:0006813||ISS  go_function voltage-gated potassium channel activity|GO:0005249||ISS  product potassium channel tetramerisation domain-containing protein  note potassium channel tetramerisation domain-containing protein; FUNCTIONS IN: protein binding, voltage-gated potassium channel activity; INVOLVED IN: potassium ion transport; LOCATED IN: voltage-gated potassium channel complex, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ fold (InterPro:IPR011333), Potassium channel, voltage dependent, Kv, tetramerisation (InterPro:IPR003131), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: potassium channel tetramerisation domain-containing protein (TAIR:AT5G41330.1); Has 1331 Blast hits to 1319 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 1177; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT3G09030.1p  transcript_id AT3G09030.1  protein_id AT3G09030.1p  transcript_id AT3G09030.1  
At3g09032	chr3:002757605	0.0	C/2757605-2758045	AT3G09032.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01225.1); Has 12 Blast hits to 12 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G09032.1p  transcript_id AT3G09032.1  protein_id AT3G09032.1p  transcript_id AT3G09032.1  
At3g09035	chr3:002759067	0.0	W/2759067-2760083	AT3G09035.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function sugar binding|GO:0005529||IEA  go_process biological_process|GO:0008150||ND  go_function carbohydrate binding|GO:0030246||ISS  product legume lectin family protein  note legume lectin family protein; FUNCTIONS IN: carbohydrate binding, sugar binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: sugar binding (TAIR:AT3G09190.1); Has 583 Blast hits to 583 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 580; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G09035.1p  transcript_id AT3G09035.1  protein_id AT3G09035.1p  transcript_id AT3G09035.1  
At3g09040	chr3:002761195	0.0	C/2761195-2764281	AT3G09040.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G13650.1); Has 25998 Blast hits to 5460 proteins in 184 species: Archae - 0; Bacteria - 4; Metazoa - 238; Fungi - 173; Plants - 24958; Viruses - 0; Other Eukaryotes - 625 (source: NCBI BLink).  protein_id AT3G09040.1p  transcript_id AT3G09040.1  protein_id AT3G09040.1p  transcript_id AT3G09040.1  
At3g09050	chr3:002764860	0.0	W/2764860-2765207,2765479-2765907	AT3G09050.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 97 Blast hits to 97 proteins in 34 species: Archae - 4; Bacteria - 8; Metazoa - 31; Fungi - 4; Plants - 26; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT3G09050.1p  transcript_id AT3G09050.1  protein_id AT3G09050.1p  transcript_id AT3G09050.1  
At3g09060	chr3:002766367	0.0	C/2766367-2768430	AT3G09060.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: MEE40 (maternal effect embryo arrest 40) (TAIR:AT3G53700.1); Has 25596 Blast hits to 6045 proteins in 189 species: Archae - 8; Bacteria - 12; Metazoa - 612; Fungi - 717; Plants - 23009; Viruses - 0; Other Eukaryotes - 1238 (source: NCBI BLink).  protein_id AT3G09060.1p  transcript_id AT3G09060.1  protein_id AT3G09060.1p  transcript_id AT3G09060.1  
At3g09070	chr3:002768880	0.0	C/2768880-2770937	AT3G09070.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF740 (InterPro:IPR008004); BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT5G01170.1); Has 902 Blast hits to 759 proteins in 116 species: Archae - 0; Bacteria - 44; Metazoa - 442; Fungi - 57; Plants - 103; Viruses - 31; Other Eukaryotes - 225 (source: NCBI BLink).  protein_id AT3G09070.1p  transcript_id AT3G09070.1  protein_id AT3G09070.1p  transcript_id AT3G09070.1  
At3g09080	chr3:002781741	0.0	C/2781741-2781785,2781397-2781615,2780738-2780909,2780064-2780426,2779926-2779981,2779550-2779799,2779294-2779457,2779061-2779194,2778884-2778982,2778664-2778799,2778454-2778540,2778215-2778376,2777667-2777996,2777347-2777522,2777056-2777239,2776765-2776968,2776259-2776558	AT3G09080.1  CDS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G49660.1); Has 11046 Blast hits to 7089 proteins in 331 species: Archae - 36; Bacteria - 2713; Metazoa - 3924; Fungi - 1952; Plants - 817; Viruses - 0; Other Eukaryotes - 1604 (source: NCBI BLink).  protein_id AT3G09080.1p  transcript_id AT3G09080.1  protein_id AT3G09080.1p  transcript_id AT3G09080.1  
At3g09085	chr3:002782238	0.0	W/2782238-2782576	AT3G09085.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2253, membrane (InterPro:IPR018722); Has 550 Blast hits to 550 proteins in 186 species: Archae - 0; Bacteria - 294; Metazoa - 0; Fungi - 2; Plants - 21; Viruses - 0; Other Eukaryotes - 233 (source: NCBI BLink).  protein_id AT3G09085.1p  transcript_id AT3G09085.1  protein_id AT3G09085.1p  transcript_id AT3G09085.1  
At3g09090	chr3:002787425	0.0	C/2787425-2787552,2787153-2787263,2786905-2786987,2786664-2786781,2786404-2786567,2785388-2786061,2785228-2785298,2784811-2785067,2784296-2784477,2783787-2784070,2783596-2783713,2783301-2783483,2782912-2783229	AT3G09090.1  CDS  gene_syn DEFECTIVE IN EXINE FORMATION 1, DEX1  gene DEX1  function Encodes DEX1 (defective in exine formation). Required for exine pattern formation during pollen development.  go_component membrane|GO:0016020|11743117|ISS  go_process pollen wall assembly|GO:0010208|11743117|IMP  go_function calcium ion binding|GO:0005509|11743117|ISS  product DEX1 (DEFECTIVE IN EXINE FORMATION 1); calcium ion binding  note DEFECTIVE IN EXINE FORMATION 1 (DEX1); FUNCTIONS IN: calcium ion binding; INVOLVED IN: pollen wall assembly; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FG-GAP (InterPro:IPR013517); Has 2454 Blast hits to 1483 proteins in 272 species: Archae - 28; Bacteria - 771; Metazoa - 405; Fungi - 181; Plants - 25; Viruses - 5; Other Eukaryotes - 1039 (source: NCBI BLink).  protein_id AT3G09090.1p  transcript_id AT3G09090.1  protein_id AT3G09090.1p  transcript_id AT3G09090.1  
At3g09090	chr3:002787425	0.0	C/2787425-2787552,2787153-2787263,2786905-2786987,2786664-2786781,2786404-2786567,2785388-2786061,2785228-2785298,2784811-2785067,2784296-2784477,2783787-2784070,2783596-2783713,2783301-2783483,2783165-2783245	AT3G09090.2  CDS  gene_syn DEFECTIVE IN EXINE FORMATION 1, DEX1  gene DEX1  function Encodes DEX1 (defective in exine formation). Required for exine pattern formation during pollen development.  go_component membrane|GO:0016020|11743117|ISS  go_process pollen wall assembly|GO:0010208|11743117|IMP  go_function calcium ion binding|GO:0005509|11743117|ISS  product DEX1 (DEFECTIVE IN EXINE FORMATION 1); calcium ion binding  note DEFECTIVE IN EXINE FORMATION 1 (DEX1); FUNCTIONS IN: calcium ion binding; INVOLVED IN: pollen wall assembly; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FG-GAP (InterPro:IPR013517); Has 2290 Blast hits to 1374 proteins in 257 species: Archae - 30; Bacteria - 754; Metazoa - 364; Fungi - 151; Plants - 31; Viruses - 5; Other Eukaryotes - 955 (source: NCBI BLink).  protein_id AT3G09090.2p  transcript_id AT3G09090.2  protein_id AT3G09090.2p  transcript_id AT3G09090.2  
At3g09100	chr3:002792785	0.0	C/2792785-2792913,2792483-2792609,2792157-2792308,2791955-2792038,2791810-2791872,2791554-2791685,2791256-2791465,2790730-2790861,2790587-2790636,2790289-2790451,2790038-2790211	AT3G09100.1  CDS  go_component nucleus|GO:0005634||IEA  go_process mRNA capping|GO:0006370||IEA  go_process mRNA processing|GO:0006397||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_process dephosphorylation|GO:0016311||IEA  go_function mRNA guanylyltransferase activity|GO:0004484||IEA  go_function polynucleotide 5 -phosphatase activity|GO:0004651||IEA  go_function protein tyrosine phosphatase activity|GO:0004725||IEA  go_function protein tyrosine/serine/threonine phosphatase activity|GO:0008138||IEA  go_function phosphatase activity|GO:0016791||IEA  go_process mRNA capping|GO:0006370||ISS  go_process mRNA processing|GO:0006397||ISS  go_function mRNA guanylyltransferase activity|GO:0004484||ISS  product mRNA capping enzyme family protein  note mRNA capping enzyme family protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity, mRNA guanylyltransferase activity, polynucleotide 5 -phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation, mRNA processing, mRNA capping, dephosphorylation; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Protein-tyrosine phosphatase (InterPro:IPR000387), Protein-tyrosine phosphatase, dual specificity (InterPro:IPR000340), mRNA capping enzyme (InterPro:IPR001339), mRNA capping enzyme, bifunctional (InterPro:IPR017074); BEST Arabidopsis thaliana protein match is: mRNA guanylyltransferase/ phosphatase/ polynucleotide 5 -phosphatase/ protein tyrosine phosphatase/ protein tyrosine/serine/threonine phosphatase (TAIR:AT5G01290.1); Has 621 Blast hits to 619 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 278; Fungi - 143; Plants - 39; Viruses - 60; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT3G09100.1p  transcript_id AT3G09100.1  protein_id AT3G09100.1p  transcript_id AT3G09100.1  
At3g09100	chr3:002792785	0.0	C/2792785-2792913,2792483-2792609,2792157-2792308,2791955-2792038,2791810-2791872,2791554-2791685,2791256-2791465,2790730-2790861,2790587-2790636,2790289-2790451,2790074-2790211,2789461-2789568,2789270-2789368,2788964-2789138,2788725-2788855,2788435-2788560	AT3G09100.2  CDS  go_component nucleus|GO:0005634||IEA  go_process DNA replication|GO:0006260||IEA  go_process DNA repair|GO:0006281||IEA  go_process DNA recombination|GO:0006310||IEA  go_process mRNA capping|GO:0006370||IEA  go_process mRNA processing|GO:0006397||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_process dephosphorylation|GO:0016311||IEA  go_function DNA ligase (ATP) activity|GO:0003910||IEA  go_function mRNA guanylyltransferase activity|GO:0004484||IEA  go_function polynucleotide 5 -phosphatase activity|GO:0004651||IEA  go_function protein tyrosine phosphatase activity|GO:0004725||IEA  go_function ATP binding|GO:0005524||IEA  go_function protein tyrosine/serine/threonine phosphatase activity|GO:0008138||IEA  go_function phosphatase activity|GO:0016791||IEA  go_process mRNA capping|GO:0006370||ISS  go_process mRNA processing|GO:0006397||ISS  go_function mRNA guanylyltransferase activity|GO:0004484||ISS  product mRNA capping enzyme family protein  note mRNA capping enzyme family protein; FUNCTIONS IN: in 7 functions; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Protein-tyrosine phosphatase (InterPro:IPR000387), ATP dependent DNA ligase, central (InterPro:IPR012310), mRNA capping enzyme, bifunctional (InterPro:IPR017074), mRNA capping enzyme (InterPro:IPR001339), Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Protein-tyrosine phosphatase, dual specificity (InterPro:IPR000340), mRNA capping enzyme, C-terminal (InterPro:IPR013846); BEST Arabidopsis thaliana protein match is: mRNA guanylyltransferase/ phosphatase/ polynucleotide 5 -phosphatase/ protein tyrosine phosphatase/ protein tyrosine/serine/threonine phosphatase (TAIR:AT5G01290.1); Has 748 Blast hits to 730 proteins in 184 species: Archae - 0; Bacteria - 6; Metazoa - 285; Fungi - 147; Plants - 44; Viruses - 65; Other Eukaryotes - 201 (source: NCBI BLink).  protein_id AT3G09100.2p  transcript_id AT3G09100.2  protein_id AT3G09100.2p  transcript_id AT3G09100.2  
At3g09110	chr3:002795337	0.0	C/2795337-2795963,2794850-2795254	AT3G09110.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF674 (InterPro:IPR007750); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01150.1); Has 170 Blast hits to 124 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G09110.1p  transcript_id AT3G09110.1  protein_id AT3G09110.1p  transcript_id AT3G09110.1  
At3g09120	chr3:002797953	0.0	C/2797953-2798588,2797556-2797864	AT3G09120.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF674 (InterPro:IPR007750); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09110.1); Has 165 Blast hits to 124 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 165; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G09120.1p  transcript_id AT3G09120.1  protein_id AT3G09120.1p  transcript_id AT3G09120.1  
At3g09130	chr3:002799312	0.0	W/2799312-2800505	AT3G09130.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G42786.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G09130.1p  transcript_id AT3G09130.1  protein_id AT3G09130.1p  transcript_id AT3G09130.1  
At3g09140	chr3:002801280	0.0	C/2801280-2802773,2801094-2801192	AT3G09140.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF674 (InterPro:IPR007750); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G43240.3); Has 215 Blast hits to 125 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G09140.1p  transcript_id AT3G09140.1  protein_id AT3G09140.1p  transcript_id AT3G09140.1  
At3g09140	chr3:002802093	0.0	C/2802093-2802773,2801280-2802008,2801094-2801192	AT3G09140.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF674 (InterPro:IPR007750); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G43240.3); Has 214 Blast hits to 126 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 214; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G09140.2p  transcript_id AT3G09140.2  protein_id AT3G09140.2p  transcript_id AT3G09140.2  
At3g09150	chr3:002803665	0.0	W/2803665-2803886,2804070-2804186,2804269-2804363,2804450-2804543,2804630-2804761,2804836-2804940,2805029-2805079,2805160-2805333	AT3G09150.2  CDS  gene_syn ELONGATED HYPOCOTYL 2, GENOMES UNCOUPLED 3, GUN3, HY2, PHYTOCHROMOBILIN SYNTHASE  gene HY2  function Required for biosynthesis of the tetrapyrrole phytochrome chromophore phytochromobilin. Encodes phytochromobilin synthase, a ferredoxin-dependent biliverdin reductase. It is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast.  go_component chloroplast|GO:0009507|11226195|IDA  go_process chloroplast-nucleus signaling pathway|GO:0010019|7690685|IMP  go_process phytochromobilin biosynthetic process|GO:0010024||NAS  go_function phytochromobilin:ferredoxin oxidoreductase activity|GO:0050619|11226195|IDA  go_function phytochromobilin:ferredoxin oxidoreductase activity|GO:0050619||ISS  product HY2 (ELONGATED HYPOCOTYL 2); phytochromobilin:ferredoxin oxidoreductase  note ELONGATED HYPOCOTYL 2 (HY2); FUNCTIONS IN: phytochromobilin:ferredoxin oxidoreductase activity; INVOLVED IN: chloroplast-nucleus signaling pathway, phytochromobilin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin-dependent bilin reductase (InterPro:IPR009249); Has 358 Blast hits to 358 proteins in 51 species: Archae - 0; Bacteria - 169; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).  protein_id AT3G09150.2p  transcript_id AT3G09150.2  protein_id AT3G09150.2p  transcript_id AT3G09150.2  
At3g09150	chr3:002803665	0.0	W/2803665-2803886,2804076-2804186,2804269-2804363,2804450-2804543,2804630-2804761,2804836-2804940,2805029-2805079,2805160-2805333	AT3G09150.1  CDS  gene_syn ELONGATED HYPOCOTYL 2, GENOMES UNCOUPLED 3, GUN3, HY2, PHYTOCHROMOBILIN SYNTHASE  gene HY2  function Required for biosynthesis of the tetrapyrrole phytochrome chromophore phytochromobilin. Encodes phytochromobilin synthase, a ferredoxin-dependent biliverdin reductase. It is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast.  go_component chloroplast|GO:0009507|11226195|IDA  go_process chloroplast-nucleus signaling pathway|GO:0010019|7690685|IMP  go_process phytochromobilin biosynthetic process|GO:0010024||NAS  go_function phytochromobilin:ferredoxin oxidoreductase activity|GO:0050619|11226195|IDA  go_function phytochromobilin:ferredoxin oxidoreductase activity|GO:0050619||ISS  product HY2 (ELONGATED HYPOCOTYL 2); phytochromobilin:ferredoxin oxidoreductase  note ELONGATED HYPOCOTYL 2 (HY2); FUNCTIONS IN: phytochromobilin:ferredoxin oxidoreductase activity; INVOLVED IN: chloroplast-nucleus signaling pathway, phytochromobilin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin-dependent bilin reductase (InterPro:IPR009249); Has 354 Blast hits to 354 proteins in 50 species: Archae - 0; Bacteria - 166; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT3G09150.1p  transcript_id AT3G09150.1  protein_id AT3G09150.1p  transcript_id AT3G09150.1  
At3g09150	chr3:002804085	0.0	W/2804085-2804186,2804269-2804363,2804450-2804543,2804630-2804761,2804836-2804940,2805029-2805079,2805160-2805333	AT3G09150.3  CDS  gene_syn ELONGATED HYPOCOTYL 2, GENOMES UNCOUPLED 3, GUN3, HY2, PHYTOCHROMOBILIN SYNTHASE  gene HY2  function Required for biosynthesis of the tetrapyrrole phytochrome chromophore phytochromobilin. Encodes phytochromobilin synthase, a ferredoxin-dependent biliverdin reductase. It is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast.  go_component chloroplast|GO:0009507|11226195|IDA  go_process chloroplast-nucleus signaling pathway|GO:0010019|7690685|IMP  go_process phytochromobilin biosynthetic process|GO:0010024||NAS  go_function phytochromobilin:ferredoxin oxidoreductase activity|GO:0050619|11226195|IDA  go_function phytochromobilin:ferredoxin oxidoreductase activity|GO:0050619||ISS  product HY2 (ELONGATED HYPOCOTYL 2); phytochromobilin:ferredoxin oxidoreductase  note ELONGATED HYPOCOTYL 2 (HY2); FUNCTIONS IN: phytochromobilin:ferredoxin oxidoreductase activity; INVOLVED IN: chloroplast-nucleus signaling pathway, phytochromobilin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin-dependent bilin reductase (InterPro:IPR009249); Has 353 Blast hits to 353 proteins in 50 species: Archae - 0; Bacteria - 166; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 158 (source: NCBI BLink).  protein_id AT3G09150.3p  transcript_id AT3G09150.3  protein_id AT3G09150.3p  transcript_id AT3G09150.3  
At3g09160	chr3:002806892	0.0	C/2806892-2806912,2806770-2806801,2806421-2806693,2805951-2806120,2805779-2805879	AT3G09160.1  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nucleic acid binding / nucleotide binding (TAIR:AT5G03480.1); Has 62 Blast hits to 55 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G09160.1p  transcript_id AT3G09160.1  protein_id AT3G09160.1p  transcript_id AT3G09160.1  
At3g09162	chr3:002807970	0.0	C/2807970-2808170	AT3G09162.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G09162.1p  transcript_id AT3G09162.1  protein_id AT3G09162.1p  transcript_id AT3G09162.1  
At3g09165	chr3:002808905	0.0	W/2808905-2812409	AT3G09165.1  mRNA_TE_gene  pseudo  gene_syn MZB10.20  note Transposable element gene, Mutator-like transposase family, has a 6.7e-75 P-value blast match to Q9SJR8 /172-333 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g09170	chr3:002814050	0.0	C/2814050-2817769	AT3G09170.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G04545.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G34610.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At3g09180	chr3:002819278	0.0	W/2819278-2819551,2819646-2819811,2819984-2820434,2820525-2820584,2820668-2820736,2820830-2820873,2820952-2821096	AT3G09180.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 88 Blast hits to 88 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 69; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G09180.1p  transcript_id AT3G09180.1  protein_id AT3G09180.1p  transcript_id AT3G09180.1  
At3g09190	chr3:002821650	0.0	C/2821650-2822687	AT3G09190.1  CDS  gene_syn F3L24.6  function Regulates flowering time in Ws ecotype.  go_component endomembrane system|GO:0012505||IEA  go_function sugar binding|GO:0005529||IEA  go_process photoperiodism, flowering|GO:0048573|18799658|IMP  product sugar binding  note sugar binding; FUNCTIONS IN: sugar binding; INVOLVED IN: photoperiodism, flowering; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320); BEST Arabidopsis thaliana protein match is: legume lectin family protein (TAIR:AT3G09035.1).  protein_id AT3G09190.1p  transcript_id AT3G09190.1  protein_id AT3G09190.1p  transcript_id AT3G09190.1  
At3g09200	chr3:002824766	0.0	C/2824766-2825020,2824601-2824669,2824086-2824184,2823601-2823993,2823364-2823510	AT3G09200.1  CDS  go_component nucleus|GO:0005634|14617066|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function structural constituent of ribosome|GO:0003735||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic ribosome|GO:0022626|17934214|IDA  go_process translation|GO:0006412||ISS  go_process translational elongation|GO:0006414||ISS  go_process response to cold|GO:0009409|14617066|IEP  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S acidic ribosomal protein P0 (RPP0B)  note 60S acidic ribosomal protein P0 (RPP0B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, response to salt stress, response to cold, translation; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813), Ribosomal protein L10 (InterPro:IPR001790); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P0 (RPP0C) (TAIR:AT3G11250.1); Has 1212 Blast hits to 1209 proteins in 357 species: Archae - 223; Bacteria - 1; Metazoa - 420; Fungi - 182; Plants - 109; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink).  protein_id AT3G09200.1p  transcript_id AT3G09200.1  protein_id AT3G09200.1p  transcript_id AT3G09200.1  
At3g09200	chr3:002824934	0.0	C/2824934-2825020,2824766-2824834,2824601-2824669,2824086-2824184,2823601-2823993,2823364-2823510	AT3G09200.2  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function structural constituent of ribosome|GO:0003735||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component cytosolic ribosome|GO:0022626|17934214|IDA  go_process translation|GO:0006412||ISS  go_process translational elongation|GO:0006414||ISS  go_process response to cold|GO:0009409|14617066|IEP  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S acidic ribosomal protein P0 (RPP0B)  note 60S acidic ribosomal protein P0 (RPP0B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, response to salt stress, response to cold, translation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813), Ribosomal protein L10 (InterPro:IPR001790); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P0 (RPP0C) (TAIR:AT3G11250.1); Has 1070 Blast hits to 1069 proteins in 335 species: Archae - 223; Bacteria - 1; Metazoa - 379; Fungi - 127; Plants - 87; Viruses - 0; Other Eukaryotes - 253 (source: NCBI BLink).  protein_id AT3G09200.2p  transcript_id AT3G09200.2  protein_id AT3G09200.2p  transcript_id AT3G09200.2  
At3g09210	chr3:002826464	0.0	C/2826464-2826850,2826055-2826233,2825620-2825971,2825422-2825505	AT3G09210.1  CDS  gene_syn PLASTID TRANSCRIPTIONALLY ACTIVE13, PTAC13  gene PTAC13  go_component nucleoid|GO:0009295|16326926|IDA  go_process positive regulation of RNA elongation from RNA polymerase II promoter|GO:0032968||IEA  go_function transcription elongation regulator activity|GO:0003711||IEA  go_component plastid chromosome|GO:0009508|16326926|IDA  product PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13); transcription elongation regulator  note PLASTID TRANSCRIPTIONALLY ACTIVE13 (PTAC13); FUNCTIONS IN: transcription elongation regulator activity; INVOLVED IN: positive regulation of RNA elongation from RNA polymerase II promoter; LOCATED IN: plastid chromosome, nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Transcription antitermination protein, NusG, N-terminal (InterPro:IPR006645), Translation protein SH3-like, subgroup (InterPro:IPR014722), KOW (InterPro:IPR005824); Has 2507 Blast hits to 2507 proteins in 692 species: Archae - 0; Bacteria - 1288; Metazoa - 0; Fungi - 2; Plants - 16; Viruses - 0; Other Eukaryotes - 1201 (source: NCBI BLink).  protein_id AT3G09210.1p  transcript_id AT3G09210.1  protein_id AT3G09210.1p  transcript_id AT3G09210.1  
At3g09220	chr3:002830385	0.0	C/2830385-2830477,2829852-2830003,2829238-2829482,2828819-2828947,2827686-2828639,2827434-2827564	AT3G09220.1  CDS  gene_syn LAC7, laccase 7  gene LAC7  function putative laccase, a member of laccase family of genes (17 members in Arabidopsis).  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process lignin catabolic process|GO:0046274||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function laccase activity|GO:0008471|15940465|ISS  product LAC7 (laccase 7); laccase  note laccase 7 (LAC7); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase family protein / diphenol oxidase family protein (TAIR:AT5G01050.1); Has 6949 Blast hits to 5831 proteins in 957 species: Archae - 27; Bacteria - 2475; Metazoa - 481; Fungi - 2692; Plants - 903; Viruses - 0; Other Eukaryotes - 371 (source: NCBI BLink).  protein_id AT3G09220.1p  transcript_id AT3G09220.1  protein_id AT3G09220.1p  transcript_id AT3G09220.1  
At3g09230	chr3:002833460	0.0	W/2833460-2833793,2834287-2835134	AT3G09230.1  CDS  gene_syn AtMYB1, myb domain protein 1  gene AtMYB1  function member of MYB3R- and R2R3- type MYB- encoding genes  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_function DNA binding|GO:0003677|1623193|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product AtMYB1 (myb domain protein 1); DNA binding / transcription factor  note myb domain protein 1 (AtMYB1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, response to salicylic acid stimulus; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB109 (myb domain protein 109); DNA binding / transcription factor (TAIR:AT3G55730.1); Has 6306 Blast hits to 5667 proteins in 353 species: Archae - 0; Bacteria - 0; Metazoa - 667; Fungi - 340; Plants - 3530; Viruses - 3; Other Eukaryotes - 1766 (source: NCBI BLink).  protein_id AT3G09230.1p  transcript_id AT3G09230.1  protein_id AT3G09230.1p  transcript_id AT3G09230.1  
At3g09240	chr3:002837699	0.0	C/2837699-2837956,2837295-2837430,2837056-2837189,2836889-2836994,2836718-2836803,2836409-2836630,2836180-2836326,2835988-2836101,2835668-2835898	AT3G09240.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function binding|GO:0005488||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  product protein kinase-related  note protein kinase-related; FUNCTIONS IN: protein tyrosine kinase activity, binding, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G01060.1); Has 16791 Blast hits to 16543 proteins in 656 species: Archae - 4; Bacteria - 750; Metazoa - 3298; Fungi - 140; Plants - 11806; Viruses - 74; Other Eukaryotes - 719 (source: NCBI BLink).  protein_id AT3G09240.1p  transcript_id AT3G09240.1  protein_id AT3G09240.1p  transcript_id AT3G09240.1  
At3g09250	chr3:002839080	0.0	W/2839080-2839112,2839479-2839626,2839741-2840294	AT3G09250.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process nucleotide-excision repair|GO:0006289||IEA  go_function DNA binding|GO:0003677||IEA  go_function nuclease activity|GO:0004518||IEA  product DNA binding / nuclease  note DNA binding / nuclease; FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: nucleotide-excision repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UvrB/UvrC protein (InterPro:IPR001943); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G10925.2); Has 169 Blast hits to 169 proteins in 54 species: Archae - 0; Bacteria - 92; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT3G09250.1p  transcript_id AT3G09250.1  protein_id AT3G09250.1p  transcript_id AT3G09250.1  
At3g09260	chr3:002843569	0.0	C/2843569-2843730,2843085-2843154,2842936-2842991,2842738-2842813,2842525-2842602,2842342-2842429,2841988-2842243,2841781-2841896,2841474-2841691,2841329-2841363,2841144-2841246,2840946-2841054,2840657-2840864	AT3G09260.1  CDS  gene_syn BGLU23, PSR3.1, PYK10  gene PYK10  function Encodes beta-glucosidase.The major constituent of ER bodies. One of the most abundant proteins in Arabidopsis seedlings. Exist in an soluble (inactive) and non-soluble (active) form, most probably formed in a polymerization process. Involved in the mutualistic interaction between Arabidopsis and the endophytic fungus Piriformospora indica.  go_component nucleus|GO:0005634|14617066|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function copper ion binding|GO:0005507|16526091|IDA  go_component ER body|GO:0010168|12581307|IDA  go_process response to symbiotic fungus|GO:0009610|18248598|IMP  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function beta-glucosidase activity|GO:0008422|18467340|IDA  go_function fucosidase activity|GO:0015928|15919674|TAS  product PYK10; beta-glucosidase/ copper ion binding / fucosidase/ hydrolase, hydrolyzing O-glycosyl compounds  note PYK10; FUNCTIONS IN: beta-glucosidase activity, copper ion binding, hydrolase activity, hydrolyzing O-glycosyl compounds, fucosidase activity; INVOLVED IN: response to salt stress, response to symbiotic fungus; LOCATED IN: peroxisome, nucleus, vacuole, membrane, ER body; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU22; catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G66280.1); Has 5740 Blast hits to 5516 proteins in 796 species: Archae - 98; Bacteria - 3125; Metazoa - 593; Fungi - 134; Plants - 852; Viruses - 0; Other Eukaryotes - 938 (source: NCBI BLink).  protein_id AT3G09260.1p  transcript_id AT3G09260.1  protein_id AT3G09260.1p  transcript_id AT3G09260.1  
At3g09270	chr3:002848903	0.0	C/2848903-2849226,2848407-2848757	AT3G09270.1  CDS  gene_syn ATGSTU8, GLUTATHIONE S-TRANSFERASE TAU 8  gene ATGSTU8  function Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTU8 (GLUTATHIONE S-TRANSFERASE TAU 8); glutathione transferase  note GLUTATHIONE S-TRANSFERASE TAU 8 (ATGSTU8); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: response to cadmium ion, toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTU7 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 7); glutathione transferase (TAIR:AT2G29420.1); Has 4774 Blast hits to 4771 proteins in 734 species: Archae - 0; Bacteria - 2398; Metazoa - 743; Fungi - 115; Plants - 1092; Viruses - 0; Other Eukaryotes - 426 (source: NCBI BLink).  protein_id AT3G09270.1p  transcript_id AT3G09270.1  protein_id AT3G09270.1p  transcript_id AT3G09270.1  
At3g09280	chr3:002850920	0.0	C/2850920-2851258	AT3G09280.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 10 Blast hits to 10 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G09280.1p  transcript_id AT3G09280.1  protein_id AT3G09280.1p  transcript_id AT3G09280.1  
At3g09290	chr3:002856141	0.0	W/2856141-2856659	AT3G09290.1  CDS  gene_syn TAC1, TELOMERASE ACTIVATOR1  gene TAC1  function encodes activation factor TAC1 which mediates telomerase activity  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|17220202|IEP  go_function zinc ion binding|GO:0008270||ISS  product TAC1 (TELOMERASE ACTIVATOR1); nucleic acid binding / transcription factor/ zinc ion binding  note TELOMERASE ACTIVATOR1 (TAC1); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT3G53820.1); Has 320 Blast hits to 318 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 0; Plants - 277; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G09290.1p  transcript_id AT3G09290.1  protein_id AT3G09290.1p  transcript_id AT3G09290.1  
At3g09300	chr3:002858068	0.0	W/2858068-2858180,2858468-2858561,2858644-2858760,2858854-2858926,2859011-2859129,2859223-2859344,2859452-2859628,2859713-2859857,2859950-2860128,2860225-2860462	AT3G09300.1  CDS  gene_syn ORP3B, OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3B  gene ORP3B  go_process steroid metabolic process|GO:0008202||IEA  go_process steroid metabolic process|GO:0008202||ISS  go_function oxysterol binding|GO:0008142||ISS  product ORP3B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3B); oxysterol binding  note OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3B (ORP3B); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Oxysterol-binding protein, conserved site (InterPro:IPR018494), Oxysterol-binding protein (InterPro:IPR000648); BEST Arabidopsis thaliana protein match is: UNE18 (UNFERTILIZED EMBRYO SAC 18); oxysterol binding / sterol binding (TAIR:AT5G02100.1); Has 1795 Blast hits to 1772 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 940; Fungi - 458; Plants - 154; Viruses - 0; Other Eukaryotes - 243 (source: NCBI BLink).  protein_id AT3G09300.1p  transcript_id AT3G09300.1  protein_id AT3G09300.1p  transcript_id AT3G09300.1  
At3g09310	chr3:002861102	0.0	C/2861102-2861297,2860958-2861020,2860622-2860875	AT3G09310.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF37 (InterPro:IPR002696); Has 4056 Blast hits to 4056 proteins in 1096 species: Archae - 0; Bacteria - 2256; Metazoa - 2; Fungi - 0; Plants - 24; Viruses - 3; Other Eukaryotes - 1771 (source: NCBI BLink).  protein_id AT3G09310.1p  transcript_id AT3G09310.1  protein_id AT3G09310.1p  transcript_id AT3G09310.1  
At3g09320	chr3:002863838	0.0	C/2863838-2864113,2863116-2863208,2862916-2863017,2862751-2862828,2862571-2862669,2862342-2862437,2862142-2862258	AT3G09320.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc finger (DHHC type) family protein  note zinc finger (DHHC type) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT5G04270.1); Has 3985 Blast hits to 3980 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 1961; Fungi - 521; Plants - 400; Viruses - 0; Other Eukaryotes - 1103 (source: NCBI BLink).  protein_id AT3G09320.1p  transcript_id AT3G09320.1  protein_id AT3G09320.1p  transcript_id AT3G09320.1  
At3g09330	chr3:002867079	0.0	C/2867079-2867230,2866718-2866992,2866363-2866577,2866071-2866275,2865766-2865985,2865546-2865681,2865286-2865454,2865147-2865190,2864992-2865054,2864782-2864877	AT3G09330.1  CDS  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product amino acid transporter family protein  note amino acid transporter family protein; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid transporter family protein (TAIR:AT3G09340.1); Has 3635 Blast hits to 3592 proteins in 221 species: Archae - 3; Bacteria - 75; Metazoa - 1621; Fungi - 650; Plants - 756; Viruses - 6; Other Eukaryotes - 524 (source: NCBI BLink).  protein_id AT3G09330.1p  transcript_id AT3G09330.1  protein_id AT3G09330.1p  transcript_id AT3G09330.1  
At3g09340	chr3:002870375	0.0	C/2870375-2870526,2870009-2870283,2869653-2869867,2869361-2869565,2869056-2869275,2868833-2868968,2868573-2868741,2868434-2868477,2868279-2868341,2868050-2868157	AT3G09340.1  CDS  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product amino acid transporter family protein  note amino acid transporter family protein; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid transporter family protein (TAIR:AT3G09330.1); Has 3616 Blast hits to 3570 proteins in 216 species: Archae - 5; Bacteria - 59; Metazoa - 1622; Fungi - 649; Plants - 754; Viruses - 8; Other Eukaryotes - 519 (source: NCBI BLink).  protein_id AT3G09340.1p  transcript_id AT3G09340.1  protein_id AT3G09340.1p  transcript_id AT3G09340.1  
At3g09350	chr3:002871216	0.0	W/2871216-2871301,2871688-2871830,2871920-2871970,2872086-2872307,2872429-2872531,2872623-2873109	AT3G09350.1  CDS  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product armadillo/beta-catenin repeat family protein  note armadillo/beta-catenin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein (TAIR:AT3G53800.1); Has 443 Blast hits to 439 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 178; Fungi - 109; Plants - 94; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT3G09350.1p  transcript_id AT3G09350.1  protein_id AT3G09350.1p  transcript_id AT3G09350.1  
At3g09350	chr3:002871710	0.0	W/2871710-2871830,2871920-2871970,2872086-2872307,2872429-2872531,2872623-2873109	AT3G09350.2  CDS  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product armadillo/beta-catenin repeat family protein  note armadillo/beta-catenin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein (TAIR:AT3G53800.1); Has 426 Blast hits to 422 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 169; Fungi - 107; Plants - 93; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT3G09350.2p  transcript_id AT3G09350.2  protein_id AT3G09350.2p  transcript_id AT3G09350.2  
At3g09350	chr3:002871710	0.0	W/2871710-2871830,2871920-2871970,2872086-2872307,2872429-2872531,2872623-2873109	AT3G09350.3  CDS  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product armadillo/beta-catenin repeat family protein  note armadillo/beta-catenin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein (TAIR:AT3G53800.1).  protein_id AT3G09350.3p  transcript_id AT3G09350.3  protein_id AT3G09350.3p  transcript_id AT3G09350.3  
At3g09360	chr3:002873796	0.0	W/2873796-2873857,2873986-2874067,2874548-2874623,2874920-2875008,2875091-2875167,2875291-2875347,2875468-2875580,2875705-2875787,2875890-2875976,2876084-2876164,2876402-2876539,2876663-2876803,2876943-2876985,2877067-2877155,2877316-2877396,2877495-2877623,2877754-2877843,2878049-2878102,2878190-2878432	AT3G09360.1  CDS  go_component nucleus|GO:0005634||IEA  go_component transcription factor complex|GO:0005667||IEA  go_process transcription initiation|GO:0006352||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process translational initiation|GO:0006413||IEA  go_process positive regulation of transcription|GO:0045941||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function transcription activator activity|GO:0016563||IEA  go_function transcription regulator activity|GO:0030528||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||ISS  product RNA polymerase II transcription factor/ protein binding / transcription activator/ transcription regulator/ translation initiation factor/ zinc ion binding  note RNA polymerase II transcription factor/ protein binding / transcription activator/ transcription regulator/ translation initiation factor/ zinc ion binding; FUNCTIONS IN: in 6 functions; INVOLVED IN: translational initiation, positive regulation of transcription, regulation of transcription, DNA-dependent, transcription initiation; LOCATED IN: transcription factor complex, nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Cyclin-like (InterPro:IPR011028), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-related (InterPro:IPR013763), Brf1-like TBP-binding (InterPro:IPR011665), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: MEE65 (maternal effect embryo arrest 65); RNA polymerase II transcription factor/ cation:chloride symporter (TAIR:AT2G01280.1); Has 20399 Blast hits to 12051 proteins in 760 species: Archae - 341; Bacteria - 837; Metazoa - 8420; Fungi - 1909; Plants - 698; Viruses - 262; Other Eukaryotes - 7932 (source: NCBI BLink).  protein_id AT3G09360.1p  transcript_id AT3G09360.1  protein_id AT3G09360.1p  transcript_id AT3G09360.1  
At3g09370	chr3:002879534	0.0	W/2879534-2879575,2879884-2880059,2880172-2880223,2880321-2880378,2880667-2880761,2880845-2880948,2881025-2881153,2881252-2882128	AT3G09370.2  CDS  gene_syn AtMYB3R3, MYB3R-3, myb domain protein 3R-3, myb domain protein 3R3  gene MYB3R-3  function putative c-myb-like transcription factor (MYB3R3) mRNA,  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product MYB3R-3 (myb domain protein 3R-3); DNA binding / transcription factor  note myb domain protein 3R-3 (MYB3R-3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: MYB3R-5 (MYB DOMAIN PROTEIN 3R-5); DNA binding / transcription factor (TAIR:AT5G02320.1); Has 10453 Blast hits to 6071 proteins in 374 species: Archae - 0; Bacteria - 0; Metazoa - 963; Fungi - 770; Plants - 5861; Viruses - 6; Other Eukaryotes - 2853 (source: NCBI BLink).  protein_id AT3G09370.2p  transcript_id AT3G09370.2  protein_id AT3G09370.2p  transcript_id AT3G09370.2  
At3g09370	chr3:002879534	0.0	W/2879534-2879575,2879899-2880059,2880172-2880223,2880321-2880378,2880667-2880761,2880845-2880948,2881025-2881153,2881252-2882128	AT3G09370.1  CDS  gene_syn AtMYB3R3, MYB3R-3, myb domain protein 3R-3, myb domain protein 3R3  gene MYB3R-3  function putative c-myb-like transcription factor (MYB3R3) mRNA,  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product MYB3R-3 (myb domain protein 3R-3); DNA binding / transcription factor  note myb domain protein 3R-3 (MYB3R-3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB3R-5 (MYB DOMAIN PROTEIN 3R-5); DNA binding / transcription factor (TAIR:AT5G02320.1); Has 9050 Blast hits to 6076 proteins in 374 species: Archae - 0; Bacteria - 0; Metazoa - 917; Fungi - 746; Plants - 4684; Viruses - 4; Other Eukaryotes - 2699 (source: NCBI BLink).  protein_id AT3G09370.1p  transcript_id AT3G09370.1  protein_id AT3G09370.1p  transcript_id AT3G09370.1  
At3g09375	chr3:002882492	0.0	C/2882492-2883862	AT3G09375.1  pseudogenic_transcript  pseudo  gene_syn F3L24.25  note pseudogene, putative eukaryotic translation initiation factor 4A-3 (eIF-4A-3/eIF4A-3), strong similarity to SP|P41380|IF43_NICPL Eukaryotic initiation factor 4A-3 (eIF-4A-3) (eIF4A-3) {Nicotiana plumbaginifolia}; blastp match of 84% identity and 4.1e-163 P-value to GP|13957631|gb|AAK50586.1|AC084404_11|AC084404 putative translation initiation factor {Oryza sativa}  
At3g09380	chr3:002886003	0.0	C/2886003-2886116,2885755-2885870,2885575-2885674,2885442-2885487,2885265-2885359	AT3G09380.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF59 (InterPro:IPR002744); BEST Arabidopsis thaliana protein match is: vacuolar sorting signal binding (TAIR:AT1G68310.2); Has 408 Blast hits to 408 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 214; Fungi - 85; Plants - 40; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT3G09380.1p  transcript_id AT3G09380.1  protein_id AT3G09380.1p  transcript_id AT3G09380.1  
At3g09385	chr3:002886535	0.0	W/2886535-2887714	AT3G09385.1  pseudogenic_transcript  pseudo  gene_syn F3L24.27  note pseudogene, hypothetical protein  
At3g09390	chr3:002890124	0.0	C/2890124-2890188,2889737-2889917	AT3G09390.1  CDS  gene_syn ARABIDOPSIS THALIANA METALLOTHIONEIN-1, ARABIDOPSIS THALIANA METALLOTHIONEIN-K, ATMT-1, ATMT-K, METALLOTHIONEIN 2A, MT2A  gene MT2A  function metallothionein, binds to and detoxifies excess copper and other metals, limiting oxidative damage  go_component cellular_component|GO:0005575||ND  go_process cellular copper ion homeostasis|GO:0006878|7612924|ISS  go_function copper ion binding|GO:0005507|9112777|IDA  product MT2A (METALLOTHIONEIN 2A); copper ion binding  note METALLOTHIONEIN 2A (MT2A); FUNCTIONS IN: copper ion binding; INVOLVED IN: cellular copper ion homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Plant metallothionein, family 15 (InterPro:IPR000347); BEST Arabidopsis thaliana protein match is: MT2B (METALLOTHIONEIN 2B); copper ion binding (TAIR:AT5G02380.1); Has 569 Blast hits to 560 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 56; Fungi - 0; Plants - 503; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT3G09390.1p  transcript_id AT3G09390.1  protein_id AT3G09390.1p  transcript_id AT3G09390.1  
At3g09400	chr3:002892075	0.0	C/2892075-2893532,2891885-2891998,2891437-2891701,2891235-2891350	AT3G09400.1  CDS  gene_syn PLL3  gene PLL3  function Similar to POLTERGEIST (POL) protein phosphatase 2C. No phenotype observed in plants homozygous for a null allele. Ubiquitously expressed.  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PLL3; catalytic/ protein serine/threonine phosphatase  note PLL3; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation, N-terminal protein myristoylation; LOCATED IN: protein serine/threonine phosphatase complex; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: PLL2; catalytic/ protein serine/threonine phosphatase (TAIR:AT5G02400.1); Has 1835 Blast hits to 1815 proteins in 184 species: Archae - 0; Bacteria - 18; Metazoa - 401; Fungi - 168; Plants - 928; Viruses - 3; Other Eukaryotes - 317 (source: NCBI BLink).  protein_id AT3G09400.1p  transcript_id AT3G09400.1  protein_id AT3G09400.1p  transcript_id AT3G09400.1  
At3g09405	chr3:002897174	0.0	C/2897174-2897366,2897023-2897105,2896815-2896944,2896630-2896709,2896459-2896548,2896230-2896354,2896019-2896079,2895860-2895913,2895702-2895779,2895490-2895595,2895214-2895353,2895009-2895098	AT3G09405.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pectinacetylesterase (InterPro:IPR004963); BEST Arabidopsis thaliana protein match is: pectinacetylesterase family protein (TAIR:AT3G09410.1).  protein_id AT3G09405.1p  transcript_id AT3G09405.1  protein_id AT3G09405.1p  transcript_id AT3G09405.1  
At3g09410	chr3:002900762	0.0	C/2900762-2900984,2900593-2900675,2900384-2900513,2900206-2900285,2900010-2900099,2899687-2899811,2899403-2899463,2899214-2899267,2899033-2899110,2898823-2898928,2898422-2898582	AT3G09410.3  CDS  go_process biological_process|GO:0008150||ND  go_function carboxylesterase activity|GO:0004091||ISS  product pectinacetylesterase family protein  note pectinacetylesterase family protein; FUNCTIONS IN: carboxylesterase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pectinacetylesterase (InterPro:IPR004963); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09405.1); Has 396 Blast hits to 391 proteins in 76 species: Archae - 0; Bacteria - 38; Metazoa - 113; Fungi - 0; Plants - 156; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT3G09410.3p  transcript_id AT3G09410.3  protein_id AT3G09410.3p  transcript_id AT3G09410.3  
At3g09410	chr3:002900762	0.0	C/2900762-2900984,2900593-2900675,2900384-2900513,2900206-2900285,2900010-2900099,2899687-2899811,2899403-2899463,2899214-2899267,2899033-2899110,2898823-2898928,2898437-2898582,2898243-2898350	AT3G09410.1  CDS  go_process biological_process|GO:0008150||ND  go_function carboxylesterase activity|GO:0004091||ISS  product pectinacetylesterase family protein  note pectinacetylesterase family protein; FUNCTIONS IN: carboxylesterase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pectinacetylesterase (InterPro:IPR004963); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09405.1); Has 403 Blast hits to 396 proteins in 77 species: Archae - 0; Bacteria - 38; Metazoa - 115; Fungi - 0; Plants - 161; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT3G09410.1p  transcript_id AT3G09410.1  protein_id AT3G09410.1p  transcript_id AT3G09410.1  
At3g09430	chr3:002901280	0.0	W/2901280-2901837,2902109-2902166,2902250-2902367,2902468-2902585,2902840-2902893	AT3G09430.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 8 Blast hits to 8 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G09430.1p  transcript_id AT3G09430.1  protein_id AT3G09430.1p  transcript_id AT3G09430.1  
At3g09440	chr3:002905419	0.0	C/2905419-2905632,2903434-2905169	AT3G09440.1  CDS  go_component cell wall|GO:0005618|16287169|IDA  go_component vacuole|GO:0005773|14760709|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ATP binding|GO:0005524||IEA  go_component cytosol|GO:0005829|11402207|TAS  go_process protein folding|GO:0006457|11402207|TAS  go_process response to heat|GO:0009408|11402207|IEP  product heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3)  note heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to cadmium ion, response to heat; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1); ATP binding (TAIR:AT5G02500.1); Has 24859 Blast hits to 24560 proteins in 3087 species: Archae - 103; Bacteria - 9593; Metazoa - 3143; Fungi - 1202; Plants - 719; Viruses - 241; Other Eukaryotes - 9858 (source: NCBI BLink).  protein_id AT3G09440.1p  transcript_id AT3G09440.1  protein_id AT3G09440.1p  transcript_id AT3G09440.1  
At3g09450	chr3:002907548	0.0	W/2907548-2908081,2908165-2908332,2908466-2910091	AT3G09450.1  CDS  product unknown protein  note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28780.1); Has 268 Blast hits to 262 proteins in 131 species: Archae - 0; Bacteria - 234; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT3G09450.1p  transcript_id AT3G09450.1  protein_id AT3G09450.1p  transcript_id AT3G09450.1  
At3g09470	chr3:002914240	0.0	C/2914240-2914410,2913951-2914108,2913783-2913846,2913575-2913688,2913412-2913456,2912961-2913211,2912569-2912659,2912360-2912472,2911938-2912061,2911668-2911850	AT3G09470.2  CDS  gene_syn AT3G09460  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF895, eukaryotic (InterPro:IPR010291), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); Has 653 Blast hits to 641 proteins in 112 species: Archae - 2; Bacteria - 10; Metazoa - 448; Fungi - 116; Plants - 40; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT3G09470.2p  transcript_id AT3G09470.2  protein_id AT3G09470.2p  transcript_id AT3G09470.2  
At3g09470	chr3:002914240	0.0	C/2914240-2914410,2913951-2914108,2913783-2913846,2913575-2913688,2913412-2913456,2912961-2913211,2912569-2912659,2912360-2912472,2911938-2912061,2911740-2911850,2911243-2911328,2910668-2910734	AT3G09470.1  CDS  gene_syn AT3G09460  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF895, eukaryotic (InterPro:IPR010291), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); Has 638 Blast hits to 624 proteins in 112 species: Archae - 2; Bacteria - 10; Metazoa - 433; Fungi - 116; Plants - 40; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT3G09470.1p  transcript_id AT3G09470.1  protein_id AT3G09470.1p  transcript_id AT3G09470.1  
At3g09480	chr3:002914890	0.0	C/2914890-2915270	AT3G09480.1  CDS  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product histone H2B, putative  note histone H2B, putative; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H2B, putative (TAIR:AT5G02570.1); Has 2678 Blast hits to 2678 proteins in 284 species: Archae - 0; Bacteria - 0; Metazoa - 1868; Fungi - 162; Plants - 357; Viruses - 0; Other Eukaryotes - 291 (source: NCBI BLink).  protein_id AT3G09480.1p  transcript_id AT3G09480.1  protein_id AT3G09480.1p  transcript_id AT3G09480.1  
At3g09490	chr3:002915636	0.0	W/2915636-2916640	AT3G09490.1  CDS  go_function binding|GO:0005488||IEA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|ISS  go_process photosynthesis, light reaction|GO:0019684|11719511|TAS  product chloroplast lumen common family protein  note chloroplast lumen common family protein; FUNCTIONS IN: binding; INVOLVED IN: photosynthesis, light reaction; LOCATED IN: chloroplast thylakoid lumen; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: chloroplast lumen common family protein (TAIR:AT2G37400.1); Has 637 Blast hits to 548 proteins in 146 species: Archae - 92; Bacteria - 301; Metazoa - 8; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 195 (source: NCBI BLink).  protein_id AT3G09490.1p  transcript_id AT3G09490.1  protein_id AT3G09490.1p  transcript_id AT3G09490.1  
At3g09500	chr3:002917047	0.0	W/2917047-2917050,2917146-2917281,2917546-2917702,2917821-2917895	AT3G09500.1  CDS  go_component nucleolus|GO:0005730|15496452|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L35 (RPL35A)  note 60S ribosomal protein L35 (RPL35A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, ribosome, nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L29 (InterPro:IPR001854), Ribosomal protein L29, conserved site (InterPro:IPR018254); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L35 (RPL35D) (TAIR:AT5G02610.1); Has 829 Blast hits to 829 proteins in 305 species: Archae - 115; Bacteria - 131; Metazoa - 237; Fungi - 93; Plants - 90; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).  protein_id AT3G09500.1p  transcript_id AT3G09500.1  protein_id AT3G09500.1p  transcript_id AT3G09500.1  
At3g09505	chr3:002918413	0.0	C/2918413-2918486	AT3G09505.1  tRNA  gene_syn 60264.TRNA-ARG-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: TCG)  transcript_id AT3G09505.1  
At3g09510	chr3:002921804	0.0	W/2921804-2923258	AT3G09510.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: reverse transcriptase-related (TAIR:AT2G02650.1); Has 837 Blast hits to 819 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 836; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G09510.1p  transcript_id AT3G09510.1  protein_id AT3G09510.1p  transcript_id AT3G09510.1  
At3g09520	chr3:002923743	0.0	W/2923743-2925629	AT3G09520.1  CDS  gene_syn ATEXO70H4, exocyst subunit EXO70 family protein H4  gene ATEXO70H4  function A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.  go_component exocyst|GO:0000145||IEA  go_process exocytosis|GO:0006887||IEA  go_component exocyst|GO:0000145||ISS  go_process vesicle docking during exocytosis|GO:0006904||ISS  go_function protein binding|GO:0005515||ISS  product ATEXO70H4 (exocyst subunit EXO70 family protein H4); protein binding  note exocyst subunit EXO70 family protein H4 (ATEXO70H4); FUNCTIONS IN: protein binding; INVOLVED IN: exocytosis, vesicle docking during exocytosis; LOCATED IN: exocyst; EXPRESSED IN: stem, sperm cell, pollen tube, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: ATEXO70H3 (exocyst subunit EXO70 family protein H3); protein binding (TAIR:AT3G09530.1); Has 512 Blast hits to 512 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 46; Plants - 357; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G09520.1p  transcript_id AT3G09520.1  protein_id AT3G09520.1p  transcript_id AT3G09520.1  
At3g09530	chr3:002926302	0.0	W/2926302-2928215	AT3G09530.1  CDS  gene_syn ATEXO70H3, exocyst subunit EXO70 family protein H3  gene ATEXO70H3  function A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.  go_component exocyst|GO:0000145||IEA  go_process exocytosis|GO:0006887||IEA  go_component exocyst|GO:0000145||ISS  go_process vesicle docking during exocytosis|GO:0006904||ISS  go_function protein binding|GO:0005515||ISS  product ATEXO70H3 (exocyst subunit EXO70 family protein H3); protein binding  note exocyst subunit EXO70 family protein H3 (ATEXO70H3); FUNCTIONS IN: protein binding; INVOLVED IN: exocytosis, vesicle docking during exocytosis; LOCATED IN: exocyst; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: ATEXO70H4 (exocyst subunit EXO70 family protein H4); protein binding (TAIR:AT3G09520.1); Has 488 Blast hits to 483 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 102; Fungi - 21; Plants - 360; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G09530.1p  transcript_id AT3G09530.1  protein_id AT3G09530.1p  transcript_id AT3G09530.1  
At3g09540	chr3:002930870	0.0	C/2930870-2931137,2929961-2930312,2929573-2929783,2929410-2929478,2929079-2929315	AT3G09540.1  CDS  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function lyase activity|GO:0016829||ISS  go_function pectate lyase activity|GO:0030570||ISS  product pectate lyase family protein  note pectate lyase family protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectate lyase family protein (TAIR:AT3G55140.1); Has 995 Blast hits to 990 proteins in 175 species: Archae - 0; Bacteria - 493; Metazoa - 0; Fungi - 97; Plants - 380; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT3G09540.1p  transcript_id AT3G09540.1  protein_id AT3G09540.1p  transcript_id AT3G09540.1  
At3g09550	chr3:002932007	0.0	W/2932007-2932028,2932236-2932787,2932882-2933291,2933360-2934199	AT3G09550.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ITN1 (INCREASED TOLERANCE TO NACL); protein binding (TAIR:AT3G12360.1); Has 43064 Blast hits to 16884 proteins in 633 species: Archae - 30; Bacteria - 2370; Metazoa - 24999; Fungi - 3799; Plants - 2246; Viruses - 191; Other Eukaryotes - 9429 (source: NCBI BLink).  protein_id AT3G09550.1p  transcript_id AT3G09550.1  protein_id AT3G09550.1p  transcript_id AT3G09550.1  
At3g09560	chr3:002937206	0.0	C/2937206-2938673,2936530-2937128,2936356-2936429,2936179-2936263,2935896-2935982,2935662-2935734,2935509-2935552,2935283-2935411,2935090-2935191,2934953-2935006	AT3G09560.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product lipin family protein  note lipin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: LNS2, Lipin/Ned1/Smp2 (InterPro:IPR013209), Lipin, N-terminal conserved region (InterPro:IPR007651); BEST Arabidopsis thaliana protein match is: lipin family protein (TAIR:AT5G42870.1); Has 4533 Blast hits to 2669 proteins in 322 species: Archae - 14; Bacteria - 1642; Metazoa - 1233; Fungi - 542; Plants - 130; Viruses - 16; Other Eukaryotes - 956 (source: NCBI BLink).  protein_id AT3G09560.1p  transcript_id AT3G09560.1  protein_id AT3G09560.1p  transcript_id AT3G09560.1  
At3g09560	chr3:002937206	0.0	C/2937206-2938673,2936530-2937128,2936356-2936429,2936179-2936263,2935896-2935982,2935662-2935734,2935509-2935552,2935283-2935411,2935090-2935191,2934953-2935006	AT3G09560.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product lipin family protein  note lipin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: LNS2, Lipin/Ned1/Smp2 (InterPro:IPR013209), Lipin, N-terminal conserved region (InterPro:IPR007651); BEST Arabidopsis thaliana protein match is: lipin family protein (TAIR:AT5G42870.1); Has 4533 Blast hits to 2669 proteins in 322 species: Archae - 14; Bacteria - 1642; Metazoa - 1233; Fungi - 542; Plants - 130; Viruses - 16; Other Eukaryotes - 956 (source: NCBI BLink).  protein_id AT3G09560.2p  transcript_id AT3G09560.2  protein_id AT3G09560.2p  transcript_id AT3G09560.2  
At3g09560	chr3:002937206	0.0	C/2937206-2938673,2936530-2937128,2936356-2936429,2936179-2936263,2935896-2935982,2935662-2935734,2935509-2935552,2935283-2935411,2935090-2935191,2934953-2935006	AT3G09560.3  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product lipin family protein  note lipin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: LNS2, Lipin/Ned1/Smp2 (InterPro:IPR013209), Lipin, N-terminal conserved region (InterPro:IPR007651); BEST Arabidopsis thaliana protein match is: lipin family protein (TAIR:AT5G42870.1); Has 4533 Blast hits to 2669 proteins in 322 species: Archae - 14; Bacteria - 1642; Metazoa - 1233; Fungi - 542; Plants - 130; Viruses - 16; Other Eukaryotes - 956 (source: NCBI BLink).  protein_id AT3G09560.3p  transcript_id AT3G09560.3  protein_id AT3G09560.3p  transcript_id AT3G09560.3  
At3g09570	chr3:002940524	0.0	W/2940524-2941843	AT3G09570.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18520.1); Has 385 Blast hits to 385 proteins in 83 species: Archae - 0; Bacteria - 2; Metazoa - 216; Fungi - 12; Plants - 132; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT3G09570.1p  transcript_id AT3G09570.1  protein_id AT3G09570.1p  transcript_id AT3G09570.1  
At3g09580	chr3:002942614	0.0	C/2942614-2944047	AT3G09580.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product amine oxidase family protein  note amine oxidase family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937); Has 2076 Blast hits to 2076 proteins in 439 species: Archae - 18; Bacteria - 842; Metazoa - 222; Fungi - 27; Plants - 205; Viruses - 0; Other Eukaryotes - 762 (source: NCBI BLink).  protein_id AT3G09580.1p  transcript_id AT3G09580.1  protein_id AT3G09580.1p  transcript_id AT3G09580.1  
At3g09585	chr3:002944612	0.0	W/2944612-2944693	AT3G09585.1  tRNA  gene_syn 60264.TRNA-SER-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: CGA)  transcript_id AT3G09585.1  
At3g09590	chr3:002944953	0.0	W/2944953-2945513	AT3G09590.1  CDS  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_component extracellular region|GO:0005576||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pathogenesis-related protein, putative  note pathogenesis-related protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related, conserved site (InterPro:IPR018244), Allergen V5/Tpx-1 related (InterPro:IPR001283), Ves allergen (InterPro:IPR002413), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: allergen V5/Tpx-1-related family protein (TAIR:AT5G02730.1); Has 2251 Blast hits to 2158 proteins in 289 species: Archae - 0; Bacteria - 47; Metazoa - 1336; Fungi - 214; Plants - 599; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT3G09590.1p  transcript_id AT3G09590.1  protein_id AT3G09590.1p  transcript_id AT3G09590.1  
At3g09595	chr3:002945696	0.0	C/2945696-2945777	AT3G09595.1  tRNA  gene_syn 60264.TRNA-SER-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: TGA)  transcript_id AT3G09595.1  
At3g09600	chr3:002946459	0.0	W/2946459-2946637,2946925-2946982,2947064-2947187,2947257-2947403,2947522-2947647,2947727-2947836,2947924-2947983,2948156-2948200	AT3G09600.2  CDS  gene_syn AT3G09610  go_component chloroplast|GO:0009507||IEA  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 9 processes; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: LCL1 (LHY/CCA1-like 1); DNA binding / transcription factor (TAIR:AT5G02840.2); Has 896 Blast hits to 892 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 5; Plants - 683; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT3G09600.2p  transcript_id AT3G09600.2  protein_id AT3G09600.2p  transcript_id AT3G09600.2  
At3g09600	chr3:002946459	0.0	W/2946459-2946637,2946925-2946982,2947064-2947187,2947257-2947403,2947522-2947647,2947727-2947836,2947924-2947983,2948178-2948270	AT3G09600.1  CDS  gene_syn AT3G09610  go_component chloroplast|GO:0009507||IEA  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 9 processes; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: LCL1 (LHY/CCA1-like 1); DNA binding / transcription factor (TAIR:AT5G02840.3); Has 897 Blast hits to 893 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 5; Plants - 684; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT3G09600.1p  transcript_id AT3G09600.1  protein_id AT3G09600.1p  transcript_id AT3G09600.1  
At3g09620	chr3:002950240	0.0	C/2950240-2952205,2949152-2950155	AT3G09620.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_component cellular_component|GO:0005575||ND  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD/DEAH box helicase, putative  note DEAD/DEAH box helicase, putative; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, cultured cell; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase, putative (TAIR:AT1G20920.1); Has 82085 Blast hits to 52096 proteins in 2030 species: Archae - 469; Bacteria - 13045; Metazoa - 32922; Fungi - 9531; Plants - 3878; Viruses - 278; Other Eukaryotes - 21962 (source: NCBI BLink).  protein_id AT3G09620.1p  transcript_id AT3G09620.1  protein_id AT3G09620.1p  transcript_id AT3G09620.1  
At3g09630	chr3:002953813	0.0	W/2953813-2954919,2955331-2955444	AT3G09630.1  CDS  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L4/L1 (RPL4A)  note 60S ribosomal protein L4/L1 (RPL4A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 9 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4/L1e (InterPro:IPR002136), Ribosomal protein L4/L1e, eukaryotic/archaeal, conserved site (InterPro:IPR013000); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L4/L1 (RPL4D) (TAIR:AT5G02870.1); Has 862 Blast hits to 861 proteins in 294 species: Archae - 213; Bacteria - 13; Metazoa - 235; Fungi - 102; Plants - 77; Viruses - 0; Other Eukaryotes - 222 (source: NCBI BLink).  protein_id AT3G09630.1p  transcript_id AT3G09630.1  protein_id AT3G09630.1p  transcript_id AT3G09630.1  
At3g09630	chr3:002953813	0.0	W/2953813-2954919,2955334-2955444	AT3G09630.2  CDS  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L4/L1 (RPL4A)  note 60S ribosomal protein L4/L1 (RPL4A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4/L1e (InterPro:IPR002136), Ribosomal protein L4/L1e, eukaryotic/archaeal, conserved site (InterPro:IPR013000); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L4/L1 (RPL4D) (TAIR:AT5G02870.2); Has 862 Blast hits to 861 proteins in 294 species: Archae - 213; Bacteria - 13; Metazoa - 235; Fungi - 102; Plants - 77; Viruses - 0; Other Eukaryotes - 222 (source: NCBI BLink).  protein_id AT3G09630.2p  transcript_id AT3G09630.2  protein_id AT3G09630.2p  transcript_id AT3G09630.2  
At3g09640	chr3:002956301	0.0	W/2956301-2956422,2956524-2956698,2957050-2957115,2957258-2957306,2957387-2957469,2957546-2957625,2957717-2957819,2957909-2957967,2958145-2958163	AT3G09640.1  CDS  gene_syn APX1B, APX2, ASCORBATE PEROXIDASE 1B, ASCORBATE PEROXIDASE 2, CS2  gene APX2  function Encodes a cytosolic ascorbate peroxidase APX2. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.  go_component cytoplasm|GO:0005737||ISS  go_component cytosol|GO:0005829|9144965|TAS  go_process response to oxidative stress|GO:0006979|9306697|IDA  go_function L-ascorbate peroxidase activity|GO:0016688|9144965|TAS  go_function L-ascorbate peroxidase activity|GO:0016688||ISS  product APX2 (ASCORBATE PEROXIDASE 2); L-ascorbate peroxidase  note ASCORBATE PEROXIDASE 2 (APX2); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: response to oxidative stress; LOCATED IN: cytosol, cytoplasm; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: APX1 (ascorbate peroxidase 1); L-ascorbate peroxidase (TAIR:AT1G07890.8); Has 6281 Blast hits to 6139 proteins in 892 species: Archae - 36; Bacteria - 1714; Metazoa - 2; Fungi - 656; Plants - 2176; Viruses - 0; Other Eukaryotes - 1697 (source: NCBI BLink).  protein_id AT3G09640.1p  transcript_id AT3G09640.1  protein_id AT3G09640.1p  transcript_id AT3G09640.1  
At3g09640	chr3:002956301	0.0	W/2956301-2956422,2956524-2956698,2957050-2957115,2957258-2957306,2957387-2957469,2957546-2957625,2957717-2957819,2957909-2957967,2958145-2958163	AT3G09640.2  CDS  gene_syn APX1B, APX2, ASCORBATE PEROXIDASE 1B, ASCORBATE PEROXIDASE 2, CS2  gene APX2  function Encodes a cytosolic ascorbate peroxidase APX2. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.  go_component cytoplasm|GO:0005737||ISS  go_component cytosol|GO:0005829|9144965|TAS  go_process response to oxidative stress|GO:0006979|9306697|IDA  go_function L-ascorbate peroxidase activity|GO:0016688|9144965|TAS  go_function L-ascorbate peroxidase activity|GO:0016688||ISS  product APX2 (ASCORBATE PEROXIDASE 2); L-ascorbate peroxidase  note ASCORBATE PEROXIDASE 2 (APX2); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: response to oxidative stress; LOCATED IN: cytosol, cytoplasm; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: APX1 (ascorbate peroxidase 1); L-ascorbate peroxidase (TAIR:AT1G07890.8); Has 6281 Blast hits to 6139 proteins in 892 species: Archae - 36; Bacteria - 1714; Metazoa - 2; Fungi - 656; Plants - 2176; Viruses - 0; Other Eukaryotes - 1697 (source: NCBI BLink).  protein_id AT3G09640.2p  transcript_id AT3G09640.2  protein_id AT3G09640.2p  transcript_id AT3G09640.2  
At3g09650	chr3:002958704	0.0	W/2958704-2961040	AT3G09650.1  CDS  gene_syn CRM3, HCF152, HIGH CHLOROPHYLL FLUORESCENCE 152  gene HCF152  function RNA binding protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD transcript unit.  go_component chloroplast stroma|GO:0009570|12782738|IDA  go_process mRNA processing|GO:0006397|12782738|IMP  go_function mRNA binding|GO:0003729|12782738|IDA  product HCF152 (HIGH CHLOROPHYLL FLUORESCENCE 152); mRNA binding  note HIGH CHLOROPHYLL FLUORESCENCE 152 (HCF152); FUNCTIONS IN: mRNA binding; INVOLVED IN: mRNA processing; LOCATED IN: chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G03100.1); Has 18948 Blast hits to 5687 proteins in 168 species: Archae - 3; Bacteria - 11; Metazoa - 320; Fungi - 421; Plants - 17387; Viruses - 0; Other Eukaryotes - 806 (source: NCBI BLink).  protein_id AT3G09650.1p  transcript_id AT3G09650.1  protein_id AT3G09650.1p  transcript_id AT3G09650.1  
At3g09660	chr3:002965969	0.0	C/2965969-2966166,2965559-2965702,2965368-2965485,2965059-2965281,2964801-2964964,2964239-2964502,2964045-2964140,2963793-2963945,2963251-2963321,2963059-2963177,2962818-2962947,2962333-2962478,2962061-2962235,2961661-2961831,2961459-2961572,2961314-2961361	AT3G09660.1  CDS  gene_syn MCM8  gene MCM8  go_process DNA replication|GO:0006260||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function DNA binding|GO:0003677||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component cellular_component|GO:0005575||ND  go_process DNA replication initiation|GO:0006270||ISS  go_function DNA binding|GO:0003677||ISS  go_function ATP binding|GO:0005524||ISS  go_function DNA-dependent ATPase activity|GO:0008094||ISS  product MCM8; ATP binding / DNA binding / DNA-dependent ATPase/ nucleoside-triphosphatase/ nucleotide binding  note MCM8; FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: DNA replication initiation, DNA replication; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208); BEST Arabidopsis thaliana protein match is: ATP binding / DNA binding / DNA-dependent ATPase (TAIR:AT1G44900.1); Has 2894 Blast hits to 2776 proteins in 307 species: Archae - 234; Bacteria - 62; Metazoa - 992; Fungi - 564; Plants - 251; Viruses - 3; Other Eukaryotes - 788 (source: NCBI BLink).  protein_id AT3G09660.1p  transcript_id AT3G09660.1  protein_id AT3G09660.1p  transcript_id AT3G09660.1  
At3g09670	chr3:002966637	0.0	W/2966637-2968817	AT3G09670.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product PWWP domain-containing protein  note PWWP domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: PWWP domain-containing protein (TAIR:AT5G02950.1); Has 722 Blast hits to 638 proteins in 104 species: Archae - 0; Bacteria - 10; Metazoa - 436; Fungi - 38; Plants - 69; Viruses - 0; Other Eukaryotes - 169 (source: NCBI BLink).  protein_id AT3G09670.1p  transcript_id AT3G09670.1  protein_id AT3G09670.1p  transcript_id AT3G09670.1  
At3g09670	chr3:002966637	0.0	W/2966637-2968817	AT3G09670.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product PWWP domain-containing protein  note PWWP domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: PWWP domain-containing protein (TAIR:AT5G02950.1); Has 722 Blast hits to 638 proteins in 104 species: Archae - 0; Bacteria - 10; Metazoa - 436; Fungi - 38; Plants - 69; Viruses - 0; Other Eukaryotes - 169 (source: NCBI BLink).  protein_id AT3G09670.2p  transcript_id AT3G09670.2  protein_id AT3G09670.2p  transcript_id AT3G09670.2  
At3g09680	chr3:002970287	0.0	C/2970287-2970291,2969640-2969795,2969420-2969546,2969197-2969337	AT3G09680.1  CDS  go_component nucleolus|GO:0005730|15496452|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S23 (RPS23A)  note 40S ribosomal protein S23 (RPS23A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, nucleolus; CONTAINS InterPro DOMAIN/s: Ribosomal protein S23, eukaryotic/archaeal (InterPro:IPR005680), Ribosomal protein S12/S23 (InterPro:IPR006032), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S23 (RPS23B) (TAIR:AT5G02960.1); Has 6061 Blast hits to 6058 proteins in 1807 species: Archae - 180; Bacteria - 2789; Metazoa - 329; Fungi - 198; Plants - 757; Viruses - 0; Other Eukaryotes - 1808 (source: NCBI BLink).  protein_id AT3G09680.1p  transcript_id AT3G09680.1  protein_id AT3G09680.1p  transcript_id AT3G09680.1  
At3g09690	chr3:002972356	0.0	W/2972356-2972770,2973029-2973220,2973318-2973557,2973672-2973889,2973988-2974242,2974329-2974592	AT3G09690.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT5G02970.1); Has 647 Blast hits to 641 proteins in 160 species: Archae - 2; Bacteria - 318; Metazoa - 4; Fungi - 38; Plants - 201; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT3G09690.1p  transcript_id AT3G09690.1  protein_id AT3G09690.1p  transcript_id AT3G09690.1  
At3g09690	chr3:002972356	0.0	W/2972356-2972770,2973029-2973220,2973318-2973557,2973672-2973889,2973988-2974242,2974329-2974592	AT3G09690.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT5G02970.1); Has 647 Blast hits to 641 proteins in 160 species: Archae - 2; Bacteria - 318; Metazoa - 4; Fungi - 38; Plants - 201; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT3G09690.2p  transcript_id AT3G09690.2  protein_id AT3G09690.2p  transcript_id AT3G09690.2  
At3g09700	chr3:002976137	0.0	C/2976137-2976139,2975672-2975850,2975094-2975250	AT3G09700.1  CDS  go_function heat shock protein binding|GO:0031072||IEA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G35795.1); Has 701 Blast hits to 701 proteins in 218 species: Archae - 0; Bacteria - 144; Metazoa - 169; Fungi - 136; Plants - 46; Viruses - 2; Other Eukaryotes - 204 (source: NCBI BLink).  protein_id AT3G09700.1p  transcript_id AT3G09700.1  protein_id AT3G09700.1p  transcript_id AT3G09700.1  
At3g09710	chr3:002978841	0.0	C/2978841-2978900,2978438-2978743,2978067-2978288,2977699-2977818,2976834-2977490	AT3G09710.1  CDS  gene_syn IQ-DOMAIN 1, IQD1  gene IQD1  function Ca(2+)-dependent calmodulin-binding protein. Targeted to the nucleus. Involved in glucosinolate metabolism in response to biotic challenge. Expressed in vascular tissue.  go_component nucleus|GO:0005634|15960618|IDA  go_process defense response|GO:0006952|15960618|IMP  go_process glucosinolate biosynthetic process|GO:0019761|15960618|IMP  go_function calmodulin binding|GO:0005516|15960618|IDA  go_function calmodulin binding|GO:0005516||ISS  product IQD1 (IQ-DOMAIN 1); calmodulin binding  note IQ-DOMAIN 1 (IQD1); FUNCTIONS IN: calmodulin binding; INVOLVED IN: glucosinolate biosynthetic process, defense response; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: iqd2 (IQ-domain 2); calmodulin binding (TAIR:AT5G03040.2); Has 11165 Blast hits to 4719 proteins in 380 species: Archae - 4; Bacteria - 615; Metazoa - 3471; Fungi - 1285; Plants - 533; Viruses - 129; Other Eukaryotes - 5128 (source: NCBI BLink).  protein_id AT3G09710.1p  transcript_id AT3G09710.1  protein_id AT3G09710.1p  transcript_id AT3G09710.1  
At3g09720	chr3:002983188	0.0	C/2983188-2983268,2982965-2983097,2982754-2982881,2982573-2982664,2982295-2982391,2982066-2982146,2981742-2981974,2981461-2981655,2981269-2981359,2981071-2981193,2980817-2980967,2980483-2980703	AT3G09720.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_component cellular_component|GO:0005575||ND  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD/DEAH box helicase, putative  note DEAD/DEAH box helicase, putative; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ethylene-responsive DEAD box RNA helicase, putative (RH30) (TAIR:AT5G63120.2); Has 31352 Blast hits to 30822 proteins in 1800 species: Archae - 599; Bacteria - 13582; Metazoa - 5089; Fungi - 3376; Plants - 1453; Viruses - 31; Other Eukaryotes - 7222 (source: NCBI BLink).  protein_id AT3G09720.1p  transcript_id AT3G09720.1  protein_id AT3G09720.1p  transcript_id AT3G09720.1  
At3g09730	chr3:002984018	0.0	W/2984018-2984447,2985165-2985541,2985707-2985959,2986127-2986260	AT3G09730.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; Has 985 Blast hits to 916 proteins in 167 species: Archae - 6; Bacteria - 57; Metazoa - 528; Fungi - 86; Plants - 86; Viruses - 15; Other Eukaryotes - 207 (source: NCBI BLink).  protein_id AT3G09730.1p  transcript_id AT3G09730.1  protein_id AT3G09730.1p  transcript_id AT3G09730.1  
At3g09735	chr3:002987843	0.0	C/2987843-2987860,2986816-2987019	AT3G09735.1  CDS  go_component nucleus|GO:0005634||IEA  go_component endomembrane system|GO:0012505||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product DNA-binding S1FA family protein  note DNA-binding S1FA family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA binding protein S1FA (InterPro:IPR006779); Has 54 Blast hits to 54 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G09735.1p  transcript_id AT3G09735.1  protein_id AT3G09735.1p  transcript_id AT3G09735.1  
At3g09740	chr3:002989615	0.0	W/2989615-2989770,2990016-2990141,2990252-2990417,2990569-2990654,2990750-2990818,2990903-2990947,2991027-2991089,2991181-2991257,2991342-2991354	AT3G09740.1  CDS  gene_syn ATSYP71, SYNTAXIN OF PLANTS 71, SYP71  gene SYP71  function syntaxin of plants 71 (SYP71)  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component integral to membrane|GO:0016021|11115874|TAS  go_process protein targeting to membrane|GO:0006612|17662029|IDA  go_process intracellular protein transport|GO:0006886|11115874|TAS  go_function protein transporter activity|GO:0008565|11115874|TAS  product SYP71 (SYNTAXIN OF PLANTS 71); protein transporter  note SYNTAXIN OF PLANTS 71 (SYP71); FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein targeting to membrane, intracellular protein transport; LOCATED IN: integral to membrane, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012); BEST Arabidopsis thaliana protein match is: SYP72 (SYNTAXIN OF PLANTS 72); protein transporter (TAIR:AT3G45280.1); Has 385 Blast hits to 385 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 78; Plants - 110; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT3G09740.1p  transcript_id AT3G09740.1  protein_id AT3G09740.1p  transcript_id AT3G09740.1  
At3g09750	chr3:002992288	0.0	C/2992288-2992569	AT3G09750.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G09750.1p  transcript_id AT3G09750.1  protein_id AT3G09750.1p  transcript_id AT3G09750.1  
At3g09760	chr3:002995377	0.0	C/2995377-2995451,2994555-2995085,2994178-2994319,2993775-2994060,2993622-2993694,2993448-2993538,2993260-2993339,2992975-2993172	AT3G09760.1  CDS  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G03180.1); Has 693 Blast hits to 692 proteins in 85 species: Archae - 0; Bacteria - 2; Metazoa - 264; Fungi - 42; Plants - 321; Viruses - 25; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT3G09760.1p  transcript_id AT3G09760.1  protein_id AT3G09760.1p  transcript_id AT3G09760.1  
At3g09770	chr3:002997333	0.0	C/2997333-2997835,2996629-2997151	AT3G09770.2  CDS  gene_syn F11F8.36  go_component plasma membrane|GO:0005886|17317660|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G03200.1); Has 7050 Blast hits to 4189 proteins in 384 species: Archae - 8; Bacteria - 389; Metazoa - 2102; Fungi - 858; Plants - 2562; Viruses - 365; Other Eukaryotes - 766 (source: NCBI BLink).  protein_id AT3G09770.2p  transcript_id AT3G09770.2  protein_id AT3G09770.2p  transcript_id AT3G09770.2  
At3g09770	chr3:002997333	0.0	C/2997333-2997835,2996644-2997151,2996402-2996557	AT3G09770.1  CDS  gene_syn F11F8.36  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G03200.1); Has 8637 Blast hits to 5803 proteins in 428 species: Archae - 8; Bacteria - 389; Metazoa - 3031; Fungi - 915; Plants - 2765; Viruses - 462; Other Eukaryotes - 1067 (source: NCBI BLink).  protein_id AT3G09770.1p  transcript_id AT3G09770.1  protein_id AT3G09770.1p  transcript_id AT3G09770.1  
At3g09780	chr3:003000838	0.0	C/3000838-3003165	AT3G09780.1  CDS  gene_syn ARABIDOPSIS THALIANA CRINKLY4 RELATED 1, CCR1, X  gene CCR1  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function receptor activity|GO:0004872||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product CCR1 (ARABIDOPSIS THALIANA CRINKLY4 RELATED 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ receptor  note ARABIDOPSIS THALIANA CRINKLY4 RELATED 1 (CCR1); FUNCTIONS IN: protein serine/threonine kinase activity, receptor activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: TNFR/CD27/30/40/95 cysteine-rich region (InterPro:IPR001368), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CCR2 (ARABIDOPSIS THALIANA CRINKLY4 RELATED 2); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ receptor (TAIR:AT2G39180.1); Has 66071 Blast hits to 64981 proteins in 2666 species: Archae - 40; Bacteria - 4733; Metazoa - 29664; Fungi - 4542; Plants - 16431; Viruses - 192; Other Eukaryotes - 10469 (source: NCBI BLink).  protein_id AT3G09780.1p  transcript_id AT3G09780.1  protein_id AT3G09780.1p  transcript_id AT3G09780.1  
At3g09790	chr3:003004111	0.0	C/3004111-3006006	AT3G09790.1  CDS  gene_syn F11F8.38, UBQ8  gene UBQ8  function encodes a ubiquitin-like protein that contains tandem repeats of the ubiquitin coding region, but at least one repeat per gene encodes a protein with amino acid substitutions.  go_component cell wall|GO:0005618|16287169|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component intracellular|GO:0005622||TAS  go_process protein modification process|GO:0006464||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|7713442|ISS  go_function protein binding|GO:0005515|8382544|ISS  product UBQ8; protein binding  note UBQ8; FUNCTIONS IN: protein binding; INVOLVED IN: protein modification process, ubiquitin-dependent protein catabolic process; LOCATED IN: cell wall, intracellular, vacuole; EXPRESSED IN: guard cell, juvenile leaf, trichome; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: UBQ10 (POLYUBIQUITIN 10); protein binding (TAIR:AT4G05320.4); Has 29236 Blast hits to 5293 proteins in 605 species: Archae - 0; Bacteria - 54; Metazoa - 12564; Fungi - 3268; Plants - 5455; Viruses - 1207; Other Eukaryotes - 6688 (source: NCBI BLink).  protein_id AT3G09790.1p  transcript_id AT3G09790.1  protein_id AT3G09790.1p  transcript_id AT3G09790.1  
At3g09800	chr3:003007908	0.0	C/3007908-3007916,3007606-3007765,3007347-3007494,3007153-3007252	AT3G09800.2  CDS  gene_syn F11F8.39  go_component membrane coat|GO:0030117||IEA  go_process transport|GO:0006810||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function protein binding|GO:0005515||IEA  go_component clathrin vesicle coat|GO:0030125||ISS  go_process intracellular protein transport|GO:0006886||ISS  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport; LOCATED IN: membrane coat, clathrin vesicle coat; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, sigma subunit/coatomer, zeta subunit (InterPro:IPR000804), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: clathrin adaptor complex small chain family protein (TAIR:AT4G08520.1); Has 396 Blast hits to 396 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 164; Fungi - 83; Plants - 87; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT3G09800.2p  transcript_id AT3G09800.2  protein_id AT3G09800.2p  transcript_id AT3G09800.2  
At3g09800	chr3:003007908	0.0	C/3007908-3007916,3007606-3007765,3007347-3007494,3007175-3007252,3006940-3007024,3006731-3006790	AT3G09800.1  CDS  gene_syn F11F8.39  go_component membrane coat|GO:0030117||IEA  go_process transport|GO:0006810||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function protein binding|GO:0005515||IEA  go_component clathrin vesicle coat|GO:0030125||ISS  go_process intracellular protein transport|GO:0006886||ISS  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport; LOCATED IN: membrane coat, clathrin vesicle coat; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, sigma subunit/coatomer, zeta subunit (InterPro:IPR000804), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: clathrin adaptor complex small chain family protein (TAIR:AT4G08520.1); Has 539 Blast hits to 539 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 241; Fungi - 100; Plants - 101; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).  protein_id AT3G09800.1p  transcript_id AT3G09800.1  protein_id AT3G09800.1p  transcript_id AT3G09800.1  
At3g09810	chr3:003008753	0.0	W/3008753-3008944,3009145-3009465,3009554-3009715,3009852-3009926,3010123-3010232,3010319-3010391,3010879-3011070	AT3G09810.1  CDS  gene_syn AT3G09805, F8A24.14, F8A24_14  go_process tricarboxylic acid cycle|GO:0006099||IEA  go_process metabolic process|GO:0008152||IEA  go_function isocitrate dehydrogenase (NAD+) activity|GO:0004449||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process metabolic process|GO:0008152||ISS  go_function isocitrate dehydrogenase (NAD+) activity|GO:0004449||ISS  product isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative  note isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative; FUNCTIONS IN: isocitrate dehydrogenase (NAD+) activity, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; INVOLVED IN: tricarboxylic acid cycle, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804), Isocitrate dehydrogenase NAD-dependent, mitochondrial (InterPro:IPR004434); BEST Arabidopsis thaliana protein match is: isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative (TAIR:AT5G03290.1); Has 12448 Blast hits to 12343 proteins in 1620 species: Archae - 252; Bacteria - 5678; Metazoa - 803; Fungi - 660; Plants - 234; Viruses - 0; Other Eukaryotes - 4821 (source: NCBI BLink).  protein_id AT3G09810.1p  transcript_id AT3G09810.1  protein_id AT3G09810.1p  transcript_id AT3G09810.1  
At3g09820	chr3:003012122	0.0	W/3012122-3012213,3012320-3012373,3012665-3012711,3012803-3012834,3012922-3013023,3013130-3013197,3013295-3013371,3013470-3013567,3013672-3013742,3013856-3013922,3013998-3014181,3014482-3014624	AT3G09820.1  CDS  gene_syn ADENOSINE KINASE 1, ADK1, ATADK1, adenosine kinase 1  gene ADK1  function Involved in the salvage synthesis of adenylates and methyl recycling  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function copper ion binding|GO:0005507|16526091|IDA  go_component cytosol|GO:0005829|11115893|TAS  go_process adenosine salvage|GO:0006169|11891238|TAS  go_process response to trehalose-6-phosphate stimulus|GO:0080094|19193861|IEP  go_function adenosine kinase activity|GO:0004001|11115893|IDA  go_function adenosine kinase activity|GO:0004001|11891238|IMP  product ADK1 (adenosine kinase 1); adenosine kinase/ copper ion binding  note adenosine kinase 1 (ADK1); FUNCTIONS IN: adenosine kinase activity, copper ion binding; INVOLVED IN: response to cadmium ion, response to trehalose-6-phosphate stimulus, adenosine salvage; LOCATED IN: cytosol, apoplast, plasma membrane, chloroplast, membrane; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173), Adenosine kinase (InterPro:IPR001805); BEST Arabidopsis thaliana protein match is: ADK2 (ADENOSINE KINASE 2); adenosine kinase/ copper ion binding / kinase (TAIR:AT5G03300.1); Has 6057 Blast hits to 6053 proteins in 1012 species: Archae - 88; Bacteria - 2871; Metazoa - 313; Fungi - 130; Plants - 252; Viruses - 0; Other Eukaryotes - 2403 (source: NCBI BLink).  protein_id AT3G09820.1p  transcript_id AT3G09820.1  protein_id AT3G09820.1p  transcript_id AT3G09820.1  
At3g09820	chr3:003012645	0.0	W/3012645-3012711,3012803-3012834,3012922-3013023,3013130-3013197,3013295-3013371,3013470-3013567,3013672-3013742,3013856-3013922,3013998-3014181,3014482-3014624	AT3G09820.2  CDS  gene_syn ADENOSINE KINASE 1, ADK1, ATADK1, adenosine kinase 1  gene ADK1  function Involved in the salvage synthesis of adenylates and methyl recycling  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function copper ion binding|GO:0005507|16526091|IDA  go_component cytosol|GO:0005829|11115893|TAS  go_process adenosine salvage|GO:0006169|11891238|TAS  go_process response to trehalose-6-phosphate stimulus|GO:0080094|19193861|IEP  go_function adenosine kinase activity|GO:0004001|11115893|IDA  go_function adenosine kinase activity|GO:0004001|11891238|IMP  product ADK1 (adenosine kinase 1); adenosine kinase/ copper ion binding  note adenosine kinase 1 (ADK1); FUNCTIONS IN: adenosine kinase activity, copper ion binding; INVOLVED IN: response to cadmium ion, response to trehalose-6-phosphate stimulus, adenosine salvage; LOCATED IN: cytosol, apoplast, plasma membrane, membrane; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173), Adenosine kinase (InterPro:IPR001805); BEST Arabidopsis thaliana protein match is: ADK2 (ADENOSINE KINASE 2); adenosine kinase/ copper ion binding / kinase (TAIR:AT5G03300.1); Has 5500 Blast hits to 5496 proteins in 1000 species: Archae - 86; Bacteria - 2823; Metazoa - 308; Fungi - 130; Plants - 236; Viruses - 0; Other Eukaryotes - 1917 (source: NCBI BLink).  protein_id AT3G09820.2p  transcript_id AT3G09820.2  protein_id AT3G09820.2p  transcript_id AT3G09820.2  
At3g09830	chr3:003017199	0.0	W/3017199-3017576,3017664-3017924,3017999-3018121,3018202-3018696	AT3G09830.1  CDS  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT5G03320.1); Has 80031 Blast hits to 79234 proteins in 2651 species: Archae - 38; Bacteria - 7012; Metazoa - 35180; Fungi - 6243; Plants - 18105; Viruses - 355; Other Eukaryotes - 13098 (source: NCBI BLink).  protein_id AT3G09830.1p  transcript_id AT3G09830.1  protein_id AT3G09830.1p  transcript_id AT3G09830.1  
At3g09830	chr3:003017199	0.0	W/3017199-3017576,3017664-3017924,3017999-3018121,3018202-3018696	AT3G09830.2  CDS  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT5G03320.1); Has 80031 Blast hits to 79234 proteins in 2651 species: Archae - 38; Bacteria - 7012; Metazoa - 35180; Fungi - 6243; Plants - 18105; Viruses - 355; Other Eukaryotes - 13098 (source: NCBI BLink).  protein_id AT3G09830.2p  transcript_id AT3G09830.2  protein_id AT3G09830.2p  transcript_id AT3G09830.2  
At3g09840	chr3:003019494	0.0	W/3019494-3019522,3019672-3019834,3020124-3020352,3020479-3021245,3021330-3021551,3021641-3021712,3021796-3022440,3022530-3022832	AT3G09840.1  CDS  gene_syn ATCDC48, CDC48, CDC48A, CELL DIVISION CYCLE 48  gene CDC48  function Encodes a cell division cycle protein, a member of AAA-type ATPases gene family. Expressed throughout the plant in regions of cell division. Within the cell, sub-cellular localization varies depending on the stage of the cell cycle.Mutants in which the expression of CDC48A is altered show defects in cytokinesis, cell expansion and cell differentiation.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component nucleus|GO:0005634|8521820|IDA  go_component nuclear envelope|GO:0005635|18660433|IDA  go_component nucleolus|GO:0005730|18660433|IDA  go_component cytoplasm|GO:0005737|8521820|IDA  go_component spindle|GO:0005819|18660433|IDA  go_component phragmoplast|GO:0009524|18660433|IDA  go_process pollen germination|GO:0009846|18660433|IMP  go_process pollen tube growth|GO:0009860|18660433|IMP  go_process phosphorylation|GO:0016310|16473966|IDA  go_process cell division|GO:0051301|18660433|IMP  go_function ATPase activity|GO:0016887||ISS  go_function identical protein binding|GO:0042802|15592873|IPI  product CDC48 (CELL DIVISION CYCLE 48); ATPase/ identical protein binding  note CELL DIVISION CYCLE 48 (CDC48); FUNCTIONS IN: ATPase activity, identical protein binding; INVOLVED IN: response to cadmium ion, pollen germination, pollen tube growth, cell division, phosphorylation; LOCATED IN: in 9 components; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle protein 48, putative / CDC48, putative (TAIR:AT5G03340.1); Has 44340 Blast hits to 25498 proteins in 1881 species: Archae - 977; Bacteria - 15661; Metazoa - 7200; Fungi - 4081; Plants - 3026; Viruses - 58; Other Eukaryotes - 13337 (source: NCBI BLink).  protein_id AT3G09840.1p  transcript_id AT3G09840.1  protein_id AT3G09840.1p  transcript_id AT3G09840.1  
At3g09850	chr3:003023397	0.0	C/3023397-3025742	AT3G09850.1  CDS  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component intracellular|GO:0005622||ISS  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product D111/G-patch domain-containing protein  note D111/G-patch domain-containing protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: D111/G-patch (InterPro:IPR000467); Has 3479 Blast hits to 2376 proteins in 234 species: Archae - 15; Bacteria - 783; Metazoa - 1588; Fungi - 375; Plants - 208; Viruses - 9; Other Eukaryotes - 501 (source: NCBI BLink).  protein_id AT3G09850.1p  transcript_id AT3G09850.1  protein_id AT3G09850.1p  transcript_id AT3G09850.1  
At3g09860	chr3:003026140	0.0	W/3026140-3026291,3026759-3026837,3026935-3027000	AT3G09860.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 21 Blast hits to 21 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G09860.1p  transcript_id AT3G09860.1  protein_id AT3G09860.1p  transcript_id AT3G09860.1  
At3g09863	chr3:003027292	0.0	W/3027292-3027423	AT3G09863.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G09863.1p  transcript_id AT3G09863.1  protein_id AT3G09863.1p  transcript_id AT3G09863.1  
At3g09870	chr3:003027555	0.0	C/3027555-3027896	AT3G09870.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT2G28085.1); Has 488 Blast hits to 487 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 487; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G09870.1p  transcript_id AT3G09870.1  protein_id AT3G09870.1p  transcript_id AT3G09870.1  
At3g09880	chr3:003029902	0.0	W/3029902-3031062,3031593-3031931	AT3G09880.1  CDS  gene_syn ATB  BETA  gene ATB  BETA  function Encodes B  regulatory subunit of PP2A (AtB beta).  go_component protein phosphatase type 2A complex|GO:0000159||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein phosphatase type 2A regulator activity|GO:0008601||IEA  go_component protein phosphatase type 2A complex|GO:0000159||ISS  go_process signal transduction|GO:0007165||ISS  go_function protein phosphatase type 2A regulator activity|GO:0008601||ISS  product ATB  BETA; protein phosphatase type 2A regulator  note ATB  BETA; FUNCTIONS IN: protein phosphatase type 2A regulator activity; INVOLVED IN: signal transduction; LOCATED IN: protein phosphatase type 2A complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2A, regulatory B subunit, B56 (InterPro:IPR002554); BEST Arabidopsis thaliana protein match is: ATB  ALPHA; protein phosphatase type 2A regulator (TAIR:AT5G03470.1); Has 868 Blast hits to 850 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 491; Fungi - 106; Plants - 156; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).  protein_id AT3G09880.1p  transcript_id AT3G09880.1  protein_id AT3G09880.1p  transcript_id AT3G09880.1  
At3g09890	chr3:003032678	0.0	W/3032678-3032855,3033363-3033454,3033536-3033614,3033716-3033810,3033899-3033994,3034078-3034158	AT3G09890.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT4G19150.2); Has 50382 Blast hits to 19246 proteins in 769 species: Archae - 40; Bacteria - 2750; Metazoa - 30193; Fungi - 2969; Plants - 1487; Viruses - 529; Other Eukaryotes - 12414 (source: NCBI BLink).  protein_id AT3G09890.1p  transcript_id AT3G09890.1  protein_id AT3G09890.1p  transcript_id AT3G09890.1  
At3g09890	chr3:003032678	0.0	W/3032678-3032855,3033363-3033454,3033536-3033614,3033716-3033849	AT3G09890.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2); protein binding (TAIR:AT4G35450.4); Has 16077 Blast hits to 8209 proteins in 418 species: Archae - 12; Bacteria - 768; Metazoa - 11716; Fungi - 749; Plants - 435; Viruses - 70; Other Eukaryotes - 2327 (source: NCBI BLink).  protein_id AT3G09890.2p  transcript_id AT3G09890.2  protein_id AT3G09890.2p  transcript_id AT3G09890.2  
At3g09900	chr3:003034687	0.0	W/3034687-3034759,3035158-3035230,3035314-3035414,3035597-3035662,3035759-3035856,3035943-3036005,3036098-3036190,3036290-3036379	AT3G09900.1  CDS  gene_syn ARABIDOPSIS RAB GTPASE HOMOLOG E1E, ATRAB8E, ATRABE1E  gene ATRABE1E  go_component plasma membrane|GO:0005886|17317660|IDA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E); GTP binding  note ARABIDOPSIS RAB GTPASE HOMOLOG E1E (ATRABE1E); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: ATRAB8C; GTP binding (TAIR:AT5G03520.1); Has 23730 Blast hits to 23675 proteins in 659 species: Archae - 15; Bacteria - 126; Metazoa - 13235; Fungi - 2883; Plants - 2189; Viruses - 19; Other Eukaryotes - 5263 (source: NCBI BLink).  protein_id AT3G09900.1p  transcript_id AT3G09900.1  protein_id AT3G09900.1p  transcript_id AT3G09900.1  
At3g09910	chr3:003037986	0.0	C/3037986-3038121,3037642-3037710,3037475-3037540,3037251-3037372,3037050-3037178,3036864-3036959	AT3G09910.1  CDS  gene_syn ARABIDOPSIS RAB GTPASE HOMOLOG C2B, ATRAB18C, ATRABC2B  gene ATRABC2B  go_component intracellular|GO:0005622||IEA  go_component endomembrane system|GO:0012505||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function ATP binding|GO:0005524||IEA  go_function GTP binding|GO:0005525||IEA  go_function transcription factor binding|GO:0008134||IEA  go_function GTP binding|GO:0005525||ISS  product ATRABC2B (ARABIDOPSIS RAB GTPASE HOMOLOG C2B); ATP binding / GTP binding / transcription factor binding  note ARABIDOPSIS RAB GTPASE HOMOLOG C2B (ATRABC2B); FUNCTIONS IN: GTP binding, transcription factor binding, ATP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction, regulation of transcription, DNA-dependent; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: sepal, root, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab18 (InterPro:IPR015598), RNA polymerase sigma factor 54, interaction (InterPro:IPR002078); BEST Arabidopsis thaliana protein match is: RABC2A (RAB GTPASE HOMOLOG C2A); GTP binding / GTP-dependent protein binding / myosin XI tail binding (TAIR:AT5G03530.1); Has 23399 Blast hits to 23369 proteins in 624 species: Archae - 11; Bacteria - 86; Metazoa - 12946; Fungi - 2897; Plants - 2236; Viruses - 19; Other Eukaryotes - 5204 (source: NCBI BLink).  protein_id AT3G09910.1p  transcript_id AT3G09910.1  protein_id AT3G09910.1p  transcript_id AT3G09910.1  
At3g09915	chr3:003039015	0.0	C/3039015-3040186	AT3G09915.1  pseudogenic_transcript  pseudo  gene_syn F8A24.21  note pseudogene, hypothetical protein  
At3g09920	chr3:003042460	0.0	C/3042460-3043676,3042197-3042364,3041937-3042102,3041707-3041817,3041339-3041526,3041089-3041246,3040857-3041016,3040426-3040705	AT3G09920.1  CDS  gene_syn PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE, PIP5K9  gene PIP5K9  go_function ATP binding|GO:0005524||IEA  go_function phosphatidylinositol phosphate kinase activity|GO:0016307||IEA  go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308||IEA  go_component nucleus|GO:0005634|17220200|IDA  go_component cytosol|GO:0005829|17220200|IDA  go_component membrane|GO:0016020|17220200|IDA  go_process carbohydrate metabolic process|GO:0005975|17220200|IMP  go_process amino acid metabolic process|GO:0006520|17220200|IMP  go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308||ISS  product PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE); 1-phosphatidylinositol-4-phosphate 5-kinase/ ATP binding / phosphatidylinositol phosphate kinase  note PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE (PIP5K9); FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding; INVOLVED IN: amino acid metabolic process, carbohydrate metabolic process; LOCATED IN: cytosol, nucleus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, plant (InterPro:IPR017163), MORN motif (InterPro:IPR003409), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: phosphatidylinositol-4-phosphate 5-kinase family protein (TAIR:AT1G60890.1); Has 21682 Blast hits to 6213 proteins in 379 species: Archae - 0; Bacteria - 2219; Metazoa - 3466; Fungi - 306; Plants - 724; Viruses - 0; Other Eukaryotes - 14967 (source: NCBI BLink).  protein_id AT3G09920.1p  transcript_id AT3G09920.1  protein_id AT3G09920.1p  transcript_id AT3G09920.1  
At3g09920	chr3:003042460	0.0	C/3042460-3043676,3042197-3042364,3041937-3042102,3041707-3041817,3041339-3041526,3041089-3041246,3040857-3041016,3040426-3040705	AT3G09920.2  CDS  gene_syn PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE, PIP5K9  gene PIP5K9  go_function ATP binding|GO:0005524||IEA  go_function phosphatidylinositol phosphate kinase activity|GO:0016307||IEA  go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308||IEA  go_component nucleus|GO:0005634|17220200|IDA  go_component cytosol|GO:0005829|17220200|IDA  go_component membrane|GO:0016020|17220200|IDA  go_process carbohydrate metabolic process|GO:0005975|17220200|IMP  go_process amino acid metabolic process|GO:0006520|17220200|IMP  go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308||ISS  product PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE); 1-phosphatidylinositol-4-phosphate 5-kinase/ ATP binding / phosphatidylinositol phosphate kinase  note PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE (PIP5K9); FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding; INVOLVED IN: amino acid metabolic process, carbohydrate metabolic process; LOCATED IN: cytosol, nucleus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, plant (InterPro:IPR017163), MORN motif (InterPro:IPR003409), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: phosphatidylinositol-4-phosphate 5-kinase family protein (TAIR:AT1G60890.1); Has 21682 Blast hits to 6213 proteins in 379 species: Archae - 0; Bacteria - 2219; Metazoa - 3466; Fungi - 306; Plants - 724; Viruses - 0; Other Eukaryotes - 14967 (source: NCBI BLink).  protein_id AT3G09920.2p  transcript_id AT3G09920.2  protein_id AT3G09920.2p  transcript_id AT3G09920.2  
At3g09922	chr3:003051171	0.0	W/3051171-3051413	AT3G09922.1  CDS  gene_syn AtIPS1, INDUCED BY PHOSPHATE STARVATION1, IPS1  gene IPS1  function AF236376 Arabidopsis thaliana IPS1 mRNA, complete sequence <3051171 3051413 CDS  go_component cellular_component|GO:0005575||ND  go_process cellular response to phosphate starvation|GO:0016036|17400898|IEP  go_function molecular_function|GO:0003674||ND  product IPS1 (INDUCED BY PHOSPHATE STARVATION1)  note INDUCED BY PHOSPHATE STARVATION1 (IPS1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cellular response to phosphate starvation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot, root; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G09922.1p  transcript_id AT3G09922.1  protein_id AT3G09922.1p  transcript_id AT3G09922.1  go_function ATP binding|GO:0005524||IEA  go_function phosphatidylinositol phosphate kinase activity|GO:0016307||IEA  go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308||IEA  go_component nucleus|GO:0005634|17220200|IDA  go_component cytosol|GO:0005829|17220200|IDA  go_component membrane|GO:0016020|17220200|IDA  go_process carbohydrate metabolic process|GO:0005975|17220200|IMP  go_process amino acid metabolic process|GO:0006520|17220200|IMP  go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308||ISS  product PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE); 1-phosphatidylinositol-4-phosphate 5-kinase/ ATP binding / phosphatidylinositol phosphate kinase  note PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE (PIP5K9); FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding; INVOLVED IN: amino acid metabolic process, carbohydrate metabolic process; LOCATED IN: cytosol, nucleus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, plant (InterPro:IPR017163), MORN motif (InterPro:IPR003409), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: phosphatidylinositol-4-phosphate 5-kinase family protein (TAIR:AT1G60890.1); Has 21682 Blast hits to 6213 proteins in 379 species: Archae - 0; Bacteria - 2219; Metazoa - 3466; Fungi - 306; Plants - 724; Viruses - 0; Other Eukaryotes - 14967 (source: NCBI BLink).  protein_id AT3G09920.2p  transcript_id AT3G09920.2  protein_id AT3G09920.2p  transcript_id AT3G09920.2  
At3g09925	chr3:003052598	0.0	C/3052598-3052784,3051868-3052196	AT3G09925.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pollen Ole e 1 allergen and extensin family protein  note pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen and extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: pollen Ole e 1 allergen and extensin family protein (TAIR:AT5G05500.1); Has 123 Blast hits to 123 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 123; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G09925.1p  transcript_id AT3G09925.1  protein_id AT3G09925.1p  transcript_id AT3G09925.1  
At3g09930	chr3:003053356	0.0	W/3053356-3053416,3053503-3053703,3054224-3054504,3054579-3054885,3054989-3055203	AT3G09930.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, flower, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT5G03610.1); Has 1659 Blast hits to 1649 proteins in 123 species: Archae - 0; Bacteria - 170; Metazoa - 1; Fungi - 3; Plants - 1472; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT3G09930.1p  transcript_id AT3G09930.1  protein_id AT3G09930.1p  transcript_id AT3G09930.1  
At3g09940	chr3:003059050	0.0	C/3059050-3059103,3058488-3058559,3058156-3058207,3057989-3058069,3057783-3057877,3057475-3057697,3057144-3057388,3056918-3057058,3056501-3056839	AT3G09940.2  CDS  gene_syn ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, ATMDAR3, F8A24.20, MDHAR, MONODEHYDROASCORBATE REDUCTASE  gene MDHAR  function Encodes a member of the monodehydroascorbate reductase gene family. Critical for a mutualistic symbiosis between the host Arabidopsis and the root colonizing fungus Piriformospora indica.  go_process response to salt stress|GO:0009651|17916636|IEP  go_component cytosol|GO:0005829|16146528|IDA  go_process response to water deprivation|GO:0009414|19386380|IEP  go_process response to symbiotic fungus|GO:0009610|19386380|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16262714|IEP  go_process regulation of symbiosis, encompassing mutualism through parasitism|GO:0043903|19386380|IMP  go_function monodehydroascorbate reductase (NADH) activity|GO:0016656|16146528|ISS  product MDHAR (MONODEHYDROASCORBATE REDUCTASE); monodehydroascorbate reductase (NADH)  note MONODEHYDROASCORBATE REDUCTASE (MDHAR); FUNCTIONS IN: monodehydroascorbate reductase (NADH) activity; INVOLVED IN: response to jasmonic acid stimulus, response to salt stress; LOCATED IN: cytosol; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: ATMDAR2; monodehydroascorbate reductase (NADH) (TAIR:AT5G03630.1); Has 18112 Blast hits to 18090 proteins in 1772 species: Archae - 348; Bacteria - 12809; Metazoa - 805; Fungi - 415; Plants - 387; Viruses - 0; Other Eukaryotes - 3348 (source: NCBI BLink).  protein_id AT3G09940.2p  transcript_id AT3G09940.2  protein_id AT3G09940.2p  transcript_id AT3G09940.2  
At3g09940	chr3:003059050	0.0	C/3059050-3059103,3058488-3058559,3058156-3058207,3057989-3058069,3057783-3057901,3057475-3057697,3057144-3057388,3056918-3057058,3056501-3056839	AT3G09940.1  CDS  gene_syn ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, ATMDAR3, F8A24.20, MDHAR, MONODEHYDROASCORBATE REDUCTASE  gene MDHAR  function Encodes a member of the monodehydroascorbate reductase gene family. Critical for a mutualistic symbiosis between the host Arabidopsis and the root colonizing fungus Piriformospora indica.  go_process response to salt stress|GO:0009651|17916636|IEP  go_component cytosol|GO:0005829|16146528|IDA  go_process response to water deprivation|GO:0009414|19386380|IEP  go_process response to symbiotic fungus|GO:0009610|19386380|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16262714|IEP  go_process regulation of symbiosis, encompassing mutualism through parasitism|GO:0043903|19386380|IMP  go_function monodehydroascorbate reductase (NADH) activity|GO:0016656|16146528|ISS  product MDHAR (MONODEHYDROASCORBATE REDUCTASE); monodehydroascorbate reductase (NADH)  note MONODEHYDROASCORBATE REDUCTASE (MDHAR); FUNCTIONS IN: monodehydroascorbate reductase (NADH) activity; INVOLVED IN: response to jasmonic acid stimulus, response to salt stress; LOCATED IN: cytosol; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027); BEST Arabidopsis thaliana protein match is: ATMDAR2; monodehydroascorbate reductase (NADH) (TAIR:AT5G03630.1); Has 18605 Blast hits to 18583 proteins in 1784 species: Archae - 362; Bacteria - 13099; Metazoa - 770; Fungi - 452; Plants - 395; Viruses - 0; Other Eukaryotes - 3527 (source: NCBI BLink).  protein_id AT3G09940.1p  transcript_id AT3G09940.1  protein_id AT3G09940.1p  transcript_id AT3G09940.1  
At3g09950	chr3:003060354	0.0	C/3060354-3060632	AT3G09950.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55620.1); Has 47 Blast hits to 47 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G09950.1p  transcript_id AT3G09950.1  protein_id AT3G09950.1p  transcript_id AT3G09950.1  
At3g09960	chr3:003061990	0.0	W/3061990-3062506,3062788-3062855,3063006-3063185,3063285-3063455	AT3G09960.1  CDS  gene_syn F8A24.22  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product calcineurin-like phosphoesterase family protein  note calcineurin-like phosphoesterase family protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: calcineurin-like phosphoesterase family protein (TAIR:AT3G09970.1); Has 950 Blast hits to 950 proteins in 282 species: Archae - 18; Bacteria - 434; Metazoa - 29; Fungi - 19; Plants - 75; Viruses - 11; Other Eukaryotes - 364 (source: NCBI BLink).  protein_id AT3G09960.1p  transcript_id AT3G09960.1  protein_id AT3G09960.1p  transcript_id AT3G09960.1  
At3g09970	chr3:003063813	0.0	W/3063813-3064323,3064661-3064728,3064908-3065087,3065167-3065337	AT3G09970.1  CDS  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product calcineurin-like phosphoesterase family protein  note calcineurin-like phosphoesterase family protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: calcineurin-like phosphoesterase family protein (TAIR:AT3G09960.1); Has 715 Blast hits to 715 proteins in 245 species: Archae - 8; Bacteria - 389; Metazoa - 26; Fungi - 8; Plants - 74; Viruses - 11; Other Eukaryotes - 199 (source: NCBI BLink).  protein_id AT3G09970.1p  transcript_id AT3G09970.1  protein_id AT3G09970.1p  transcript_id AT3G09970.1  
At3g09975	chr3:003067683	0.0	W/3067683-3067781	AT3G09975.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G09975.1p  transcript_id AT3G09975.1  protein_id AT3G09975.1p  transcript_id AT3G09975.1  
At3g09980	chr3:003069358	0.0	W/3069358-3069627,3070253-3070363,3070460-3070540,3071071-3071145	AT3G09980.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF662 (InterPro:IPR007033); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G03660.1); Has 2135 Blast hits to 1807 proteins in 252 species: Archae - 58; Bacteria - 210; Metazoa - 909; Fungi - 128; Plants - 115; Viruses - 8; Other Eukaryotes - 707 (source: NCBI BLink).  protein_id AT3G09980.1p  transcript_id AT3G09980.1  protein_id AT3G09980.1p  transcript_id AT3G09980.1  
At3g09990	chr3:003075104	0.0	C/3075104-3075142,3074911-3075015,3074649-3074804,3074368-3074511,3074025-3074130,3073743-3073918,3073188-3073348,3072855-3073113,3072662-3072769	AT3G09990.1  CDS  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function nucleoside transmembrane transporter activity|GO:0005337||ISS  product equilibrative nucleoside transporter, putative (ENT2)  note equilibrative nucleoside transporter, putative (ENT2); FUNCTIONS IN: nucleoside transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Delayed-early response protein/equilibrative nucleoside transporter (InterPro:IPR002259); BEST Arabidopsis thaliana protein match is: FUR1 (FUDR RESISTANT 1); nucleoside transmembrane transporter (TAIR:AT4G05120.1); Has 695 Blast hits to 653 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 363; Fungi - 70; Plants - 93; Viruses - 0; Other Eukaryotes - 169 (source: NCBI BLink).  protein_id AT3G09990.1p  transcript_id AT3G09990.1  protein_id AT3G09990.1p  transcript_id AT3G09990.1  
At3g10000	chr3:003076874	0.0	W/3076874-3077241,3077830-3078907	AT3G10000.1  CDS  gene_syn EDA31, embryo sac development arrest 31  gene EDA31  go_process polar nucleus fusion|GO:0010197|15634699|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product EDA31 (embryo sac development arrest 31); transcription factor  note embryo sac development arrest 31 (EDA31); FUNCTIONS IN: transcription factor activity; INVOLVED IN: polar nucleus fusion, regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: PTL (PETAL LOSS); transcription factor (TAIR:AT5G03680.1); Has 351 Blast hits to 272 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 54; Fungi - 8; Plants - 254; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT3G10000.1p  transcript_id AT3G10000.1  protein_id AT3G10000.1p  transcript_id AT3G10000.1  
At3g10010	chr3:003088056	0.0	C/3088056-3088195,3087568-3087776,3086447-3087397,3086002-3086361,3085796-3085886,3084925-3085711,3084764-3084843,3084545-3084629,3084368-3084459,3084215-3084283,3084095-3084131,3083944-3084026,3083369-3083812,3083235-3083271,3083093-3083150,3082813-3082955,3082659-3082724,3082457-3082571,3082326-3082364,3081999-3082111	AT3G10010.1  CDS  gene_syn DEMETER-LIKE 2, DML2  gene DML2  function Encodes a protein with DNA glycosylase activity that is involved in maintaining methylation marks.  go_process DNA repair|GO:0006281||IEA  go_process base-excision repair|GO:0006284||IEA  go_function catalytic activity|GO:0003824||IEA  go_function endonuclease activity|GO:0004519||IEA  go_function 4 iron, 4 sulfur cluster binding|GO:0051539||IEA  go_process base-excision repair|GO:0006284||ISS  product DML2 (DEMETER-LIKE 2); 4 iron, 4 sulfur cluster binding / catalytic/ endonuclease  note DEMETER-LIKE 2 (DML2); FUNCTIONS IN: 4 iron, 4 sulfur cluster binding, catalytic activity, endonuclease activity; INVOLVED IN: DNA repair, base-excision repair; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Endonuclease III-like, iron-sulphur cluster loop (InterPro:IPR003651), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: DML1 (DEMETER-LIKE 1); DNA N-glycosylase/ DNA-(apurinic or apyrimidinic site) lyase/ protein binding (TAIR:AT2G36490.1); Has 2334 Blast hits to 2279 proteins in 851 species: Archae - 148; Bacteria - 1489; Metazoa - 95; Fungi - 56; Plants - 155; Viruses - 0; Other Eukaryotes - 391 (source: NCBI BLink).  protein_id AT3G10010.1p  transcript_id AT3G10010.1  protein_id AT3G10010.1p  transcript_id AT3G10010.1  
At3g10015	chr3:003090544	0.0	W/3090544-3090626	AT3G10015.1  tRNA  gene_syn 60243.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: TAA)  transcript_id AT3G10015.1  
At3g10020	chr3:003091225	0.0	C/3091225-3091674	AT3G10020.1  CDS  go_component cellular_component|GO:0005575||ND  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 29 Blast hits to 29 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G10020.1p  transcript_id AT3G10020.1  protein_id AT3G10020.1p  transcript_id AT3G10020.1  
At3g10020	chr3:003091291	0.0	C/3091291-3091674,3091131-3091175	AT3G10020.2  CDS  go_component cellular_component|GO:0005575||ND  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 29 Blast hits to 29 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G10020.2p  transcript_id AT3G10020.2  protein_id AT3G10020.2p  transcript_id AT3G10020.2  
At3g10030	chr3:003094002	0.0	C/3094002-3094831,3093770-3093914,3093631-3093684,3093465-3093556,3092910-3093145,3092618-3092823	AT3G10030.2  CDS  go_process amino acid biosynthetic process|GO:0008652||IEA  go_function DNA binding|GO:0003677||IEA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process amino acid biosynthetic process|GO:0008652||ISS  product aspartate/glutamate/uridylate kinase family protein  note aspartate/glutamate/uridylate kinase family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: amino acid biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Aspartate/glutamate/uridylate kinase (InterPro:IPR001048), MADF domain (InterPro:IPR006578); BEST Arabidopsis thaliana protein match is: aspartate/glutamate/uridylate kinase family protein (TAIR:AT3G18680.1); Has 4932 Blast hits to 4928 proteins in 1450 species: Archae - 41; Bacteria - 3226; Metazoa - 35; Fungi - 2; Plants - 185; Viruses - 0; Other Eukaryotes - 1443 (source: NCBI BLink).  protein_id AT3G10030.2p  transcript_id AT3G10030.2  protein_id AT3G10030.2p  transcript_id AT3G10030.2  
At3g10030	chr3:003094002	0.0	C/3094002-3094831,3093770-3093914,3093631-3093684,3093465-3093556,3092910-3093145,3092653-3092823,3092277-3092377	AT3G10030.1  CDS  go_process amino acid biosynthetic process|GO:0008652||IEA  go_function DNA binding|GO:0003677||IEA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process amino acid biosynthetic process|GO:0008652||ISS  product aspartate/glutamate/uridylate kinase family protein  note aspartate/glutamate/uridylate kinase family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: amino acid biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Aspartate/glutamate/uridylate kinase (InterPro:IPR001048), MADF domain (InterPro:IPR006578); BEST Arabidopsis thaliana protein match is: aspartate/glutamate/uridylate kinase family protein (TAIR:AT3G18680.1); Has 5113 Blast hits to 5109 proteins in 1474 species: Archae - 117; Bacteria - 3243; Metazoa - 36; Fungi - 2; Plants - 203; Viruses - 0; Other Eukaryotes - 1512 (source: NCBI BLink).  protein_id AT3G10030.1p  transcript_id AT3G10030.1  protein_id AT3G10030.1p  transcript_id AT3G10030.1  
At3g10035	chr3:003096216	0.0	W/3096216-3096288	AT3G10035.1  tRNA  gene_syn 60243.TRNA-ARG-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: TCT)  transcript_id AT3G10035.1  
At3g10040	chr3:003096580	0.0	C/3096580-3097875	AT3G10040.1  CDS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT1G21200.1); Has 3218 Blast hits to 1770 proteins in 207 species: Archae - 1; Bacteria - 114; Metazoa - 1149; Fungi - 271; Plants - 148; Viruses - 61; Other Eukaryotes - 1474 (source: NCBI BLink).  protein_id AT3G10040.1p  transcript_id AT3G10040.1  protein_id AT3G10040.1p  transcript_id AT3G10040.1  
At3g10050	chr3:003101334	0.0	C/3101334-3101741,3101029-3101208,3100689-3100958,3100335-3100541,3099994-3100242,3099845-3099915,3099643-3099760,3099390-3099524,3099164-3099304	AT3G10050.1  CDS  gene_syn L-O-METHYLTHREONINE RESISTANT 1, OMR1, THREONINE DEHYDRATASE/DEAMINASE  gene OMR1  function first enzyme in the biosynthetic pathway of isoleucine  go_component chloroplast|GO:0009507||IEA  go_process threonine metabolic process|GO:0006566||ISS  go_process isoleucine biosynthetic process|GO:0009097|12228340|TAS  go_function L-threonine ammonia-lyase activity|GO:0004794|12228340|IMP  go_function L-threonine ammonia-lyase activity|GO:0004794||ISS  product OMR1 (L-O-METHYLTHREONINE RESISTANT 1); L-threonine ammonia-lyase  note L-O-METHYLTHREONINE RESISTANT 1 (OMR1); FUNCTIONS IN: L-threonine ammonia-lyase activity; INVOLVED IN: isoleucine biosynthetic process, threonine metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Threonine dehydratase I (InterPro:IPR005787), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Threonine dehydratase, C-terminal (InterPro:IPR001721), Serine/threonine dehydratase, pyridoxal-phosphate-binding site (InterPro:IPR000634); BEST Arabidopsis thaliana protein match is: ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE); serine racemase (TAIR:AT4G11640.1); Has 16993 Blast hits to 16939 proteins in 1547 species: Archae - 402; Bacteria - 9780; Metazoa - 492; Fungi - 560; Plants - 350; Viruses - 0; Other Eukaryotes - 5409 (source: NCBI BLink).  protein_id AT3G10050.1p  transcript_id AT3G10050.1  protein_id AT3G10050.1p  transcript_id AT3G10050.1  
At3g10060	chr3:003102291	0.0	W/3102291-3102360,3102471-3102611,3102702-3102757,3102834-3102889,3103015-3103072,3103168-3103242,3103322-3103411,3103494-3103571,3103647-3103687,3103774-3103801	AT3G10060.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_process protein folding|GO:0006457||IEA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|ISS  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  go_function FK506 binding|GO:0005528||ISS  product immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative  note immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT1G20810.1); Has 5654 Blast hits to 5251 proteins in 998 species: Archae - 30; Bacteria - 2476; Metazoa - 1330; Fungi - 312; Plants - 488; Viruses - 0; Other Eukaryotes - 1018 (source: NCBI BLink).  protein_id AT3G10060.1p  transcript_id AT3G10060.1  protein_id AT3G10060.1p  transcript_id AT3G10060.1  
At3g10070	chr3:003106223	0.0	C/3106223-3106798,3105972-3106130,3105354-3105851,3104919-3104993,3104741-3104819,3104576-3104640,3104448-3104483,3104195-3104326	AT3G10070.1  CDS  gene_syn TAF12, TAFII58, TATA-ASSOCIATED FACTOR II 58, TBP-ASSOCIATED FACTOR 12  gene TAF12  function Encodes one of two Arabidopsis proteins with similarity to the TBP-associated factor TAF12.  go_component transcription factor TFIID complex|GO:0005669||IEA  go_component chloroplast|GO:0009507||IEA  go_process transcription initiation|GO:0006352||IEA  go_function DNA binding|GO:0003677||IEA  go_function transcription initiation factor activity|GO:0016986||IEA  product TAF12 (TBP-ASSOCIATED FACTOR 12); DNA binding / transcription initiation factor  note TBP-ASSOCIATED FACTOR 12 (TAF12); FUNCTIONS IN: DNA binding, transcription initiation factor activity; INVOLVED IN: transcription initiation; LOCATED IN: chloroplast, transcription factor TFIID complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID (InterPro:IPR003228), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: EER4 (ENHANCED ETHYLENE RESPONSE 4); DNA binding / transcription initiation factor (TAIR:AT1G17440.2); Has 44601 Blast hits to 27359 proteins in 1066 species: Archae - 29; Bacteria - 2833; Metazoa - 20308; Fungi - 8929; Plants - 3685; Viruses - 844; Other Eukaryotes - 7973 (source: NCBI BLink).  protein_id AT3G10070.1p  transcript_id AT3G10070.1  protein_id AT3G10070.1p  transcript_id AT3G10070.1  
At3g10080	chr3:003107476	0.0	C/3107476-3108159	AT3G10080.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process biological_process|GO:0008150||ND  product germin-like protein, putative  note germin-like protein, putative; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), Germin (InterPro:IPR001929), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: germin-like protein, putative (TAIR:AT1G18980.1); Has 929 Blast hits to 928 proteins in 104 species: Archae - 0; Bacteria - 41; Metazoa - 1; Fungi - 41; Plants - 822; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT3G10080.1p  transcript_id AT3G10080.1  protein_id AT3G10080.1p  transcript_id AT3G10080.1  
At3g10090	chr3:003108960	0.0	C/3108960-3109154	AT3G10090.1  CDS  go_component cell wall|GO:0005618|16287169|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S28 (RPS28A)  note 40S ribosomal protein S28 (RPS28A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S28e (InterPro:IPR000289); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S28 (RPS28B) (TAIR:AT5G03850.1); Has 804 Blast hits to 804 proteins in 280 species: Archae - 145; Bacteria - 0; Metazoa - 262; Fungi - 104; Plants - 121; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink).  protein_id AT3G10090.1p  transcript_id AT3G10090.1  protein_id AT3G10090.1p  transcript_id AT3G10090.1  
At3g10100	chr3:003111778	0.0	W/3111778-3115437	AT3G10100.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to ASY2, DNA binding [Arabidopsis thaliana] (TAIR:AT4G32200.1); similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT4G20730.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G09910.1); similar to hypothetical protein 27.t00126 [Brassica oleracea] (GB:ABD65062.1); contains domain (Phosphotyrosine protein) phosphatases II (SSF52799)  
At3g10110	chr3:003116225	0.0	W/3116225-3116396,3116762-3116952,3117063-3117135,3117293-3117378	AT3G10110.1  CDS  gene_syn MEE67, maternal effect embryo arrest 67  gene MEE67  go_component mitochondrial inner membrane|GO:0005743||IEA  go_component chloroplast|GO:0009507||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744||ISS  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process protein transport|GO:0015031||ISS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product MEE67 (maternal effect embryo arrest 67); P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter  note maternal effect embryo arrest 67 (MEE67); FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: embryonic development ending in seed dormancy, protein transport; LOCATED IN: mitochondrial inner membrane, chloroplast, mitochondrial inner membrane presequence translocase complex; CONTAINS InterPro DOMAIN/s: Mitochondrial import inner membrane translocase, subunit Tim17/22 (InterPro:IPR003397); BEST Arabidopsis thaliana protein match is: mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (TAIR:AT1G18320.1); Has 509 Blast hits to 509 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 226; Fungi - 159; Plants - 86; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT3G10110.1p  transcript_id AT3G10110.1  protein_id AT3G10110.1p  transcript_id AT3G10110.1  
At3g10113	chr3:003119230	0.0	C/3119230-3119391,3119027-3119138,3118875-3118936,3118586-3118792,3118043-3118510	AT3G10113.1  CDS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: EPR1 (EARLY-PHYTOCHROME-RESPONSIVE1); DNA binding / transcription factor (TAIR:AT1G18330.2); Has 893 Blast hits to 882 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 91; Fungi - 21; Plants - 676; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT3G10113.1p  transcript_id AT3G10113.1  protein_id AT3G10113.1p  transcript_id AT3G10113.1  
At3g10114	chr3:003119491	0.0	W/3119491-3120025	AT3G10114.1  pseudogenic_transcript  pseudo  function pseudogene of glycosyl hydrolase family 81 protein  
At3g10116	chr3:003126023	0.0	W/3126023-3126465,3126550-3126619	AT3G10116.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 49 Blast hits to 49 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G10116.1p  transcript_id AT3G10116.1  protein_id AT3G10116.1p  transcript_id AT3G10116.1  
At3g10120	chr3:003130155	0.0	W/3130155-3130676	AT3G10120.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G03890.1); Has 17 Blast hits to 17 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G10120.1p  transcript_id AT3G10120.1  protein_id AT3G10120.1p  transcript_id AT3G10120.1  
At3g10130	chr3:003132918	0.0	C/3132918-3133158,3132747-3132836,3132596-3132666,3132406-3132507,3132205-3132309,3131707-3131842,3131277-3131386,3131122-3131196	AT3G10130.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_component plastoglobule|GO:0010287|16461379|IDA  go_process biological_process|GO:0008150||ND  go_function binding|GO:0005488||ISS  product SOUL heme-binding family protein  note SOUL heme-binding family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, plastoglobule; CONTAINS InterPro DOMAIN/s: SOUL haem-binding protein (InterPro:IPR006917); BEST Arabidopsis thaliana protein match is: SOUL heme-binding family protein (TAIR:AT5G20140.1); Has 1323 Blast hits to 1319 proteins in 120 species: Archae - 10; Bacteria - 141; Metazoa - 158; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 906 (source: NCBI BLink).  protein_id AT3G10130.1p  transcript_id AT3G10130.1  protein_id AT3G10130.1p  transcript_id AT3G10130.1  
At3g10140	chr3:003134984	0.0	W/3134984-3135046,3135242-3135305,3135382-3135599,3135709-3135796,3136023-3136195,3136273-3136419,3136521-3136655,3136788-3137069	AT3G10140.1  CDS  gene_syn RECA3, recA homolog 3  gene RECA3  go_component mitochondrion|GO:0005739||IEA  go_process DNA metabolic process|GO:0006259||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function DNA binding|GO:0003677||IEA  go_function ATP binding|GO:0005524||IEA  go_function DNA-dependent ATPase activity|GO:0008094||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process DNA repair|GO:0006281||ISS  go_process DNA recombination|GO:0006310||ISS  go_process SOS response|GO:0009432||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA-dependent ATPase activity|GO:0008094||ISS  product RECA3 (recA homolog 3); ATP binding / DNA binding / DNA-dependent ATPase/ nucleoside-triphosphatase/ nucleotide binding  note recA homolog 3 (RECA3); FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: DNA repair, SOS response, DNA recombination, DNA metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), RecA (InterPro:IPR013765), RecA bacterial DNA recombination (InterPro:IPR001553); BEST Arabidopsis thaliana protein match is: recA family protein (TAIR:AT2G19490.1); Has 13670 Blast hits to 13583 proteins in 3361 species: Archae - 216; Bacteria - 8994; Metazoa - 140; Fungi - 177; Plants - 138; Viruses - 71; Other Eukaryotes - 3934 (source: NCBI BLink).  protein_id AT3G10140.1p  transcript_id AT3G10140.1  protein_id AT3G10140.1p  transcript_id AT3G10140.1  
At3g10150	chr3:003138834	0.0	C/3138834-3139056,3138060-3138552,3137805-3137973,3137502-3137720	AT3G10150.1  CDS  gene_syn ATPAP16, PAP16, PURPLE ACID PHOSPHATASE 16  gene PAP16  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function acid phosphatase activity|GO:0003993|16244908|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PAP16 (PURPLE ACID PHOSPHATASE 16); acid phosphatase/ protein serine/threonine phosphatase  note PURPLE ACID PHOSPHATASE 16 (PAP16); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Phosphoesterase At2g46880 (InterPro:IPR011230); BEST Arabidopsis thaliana protein match is: PAP28 (PURPLE ACID PHOSPHATASE 28); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT5G57140.1); Has 283 Blast hits to 282 proteins in 96 species: Archae - 0; Bacteria - 79; Metazoa - 0; Fungi - 123; Plants - 60; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT3G10150.1p  transcript_id AT3G10150.1  protein_id AT3G10150.1p  transcript_id AT3G10150.1  
At3g10160	chr3:003143802	0.0	C/3143802-3143949,3143507-3143718,3143076-3143141,3142608-3142717,3142468-3142528,3142051-3142134,3141893-3141949,3141740-3141800,3141611-3141657,3141402-3141479,3140918-3141076,3140522-3140824,3140307-3140385,3140070-3140225,3139793-3139989,3139588-3139647	AT3G10160.1  CDS  gene_syn A. THALIANA DHFS-FPGS HOMOLOG C, ATDFC, DFC, DHFS-FPGS HOMOLOG C  gene DFC  function Encodes a protein with tetrahydrofolylpolyglutamate synthase activity that is located in the mitochondrial matrix.  go_component mitochondrial matrix|GO:0005759|11752472|IDA  go_process one-carbon compound metabolic process|GO:0006730|11752472|TAS  go_function tetrahydrofolylpolyglutamate synthase activity|GO:0004326|11752472|IGI  product DFC (DHFS-FPGS HOMOLOG C); tetrahydrofolylpolyglutamate synthase  note DHFS-FPGS HOMOLOG C (DFC); FUNCTIONS IN: tetrahydrofolylpolyglutamate synthase activity; INVOLVED IN: one-carbon compound metabolic process; LOCATED IN: mitochondrial matrix; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mur ligase, central (InterPro:IPR013221), Folylpolyglutamate synthetase, conserved site (InterPro:IPR018109), Mur ligase, C-terminal (InterPro:IPR004101), Folylpolyglutamate synthetase (InterPro:IPR001645); BEST Arabidopsis thaliana protein match is: ATDFB (A. THALIANA DHFS-FPGS HOMOLOG B); tetrahydrofolylpolyglutamate synthase (TAIR:AT5G05980.2); Has 5067 Blast hits to 5065 proteins in 1337 species: Archae - 23; Bacteria - 2462; Metazoa - 145; Fungi - 235; Plants - 64; Viruses - 0; Other Eukaryotes - 2138 (source: NCBI BLink).  protein_id AT3G10160.1p  transcript_id AT3G10160.1  protein_id AT3G10160.1p  transcript_id AT3G10160.1  
At3g10185	chr3:003145579	0.0	W/3145579-3145650,3145960-3146199	AT3G10185.1  CDS  function Encodes a Gibberellin-regulated GASA/GAST/Snakin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: gibberellin-responsive protein, putative (TAIR:AT1G74670.1); Has 250 Blast hits to 250 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 250; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G10185.1p  transcript_id AT3G10185.1  protein_id AT3G10185.1p  transcript_id AT3G10185.1  
At3g10180	chr3:003154518	0.0	C/3154518-3154644,3154329-3154418,3154034-3154152,3153798-3153911,3153633-3153714,3153376-3153443,3153224-3153298,3152989-3153134,3152791-3152893,3152553-3152633,3152359-3152427,3152212-3152271,3151963-3152130,3151579-3151635,3151257-3151493,3151118-3151183,3150870-3151010,3150663-3150767,3150132-3150224,3149893-3150039,3149635-3149748,3149462-3149548,3149160-3149363,3148917-3149063,3148406-3148612,3148197-3148286,3147979-3148122,3147586-3147683,3147360-3147438,3146962-3147126,3146397-3146623,3145736-3145827,3143474-3143718	AT3G10180.1  CDS  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product kinesin motor protein-related  note kinesin motor protein-related; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ZCF125; ATP binding / microtubule motor (TAIR:AT1G59540.1); Has 120816 Blast hits to 63618 proteins in 2042 species: Archae - 1195; Bacteria - 15478; Metazoa - 58795; Fungi - 9480; Plants - 5213; Viruses - 480; Other Eukaryotes - 30175 (source: NCBI BLink).  protein_id AT3G10180.1p  transcript_id AT3G10180.1  protein_id AT3G10180.1p  transcript_id AT3G10180.1  
At3g10190	chr3:003155309	0.0	W/3155309-3155938	AT3G10190.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_function calcium ion binding|GO:0005509||IEA  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calmodulin, putative  note calmodulin, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin, putative (TAIR:AT2G41410.1); Has 14760 Blast hits to 9904 proteins in 1163 species: Archae - 0; Bacteria - 99; Metazoa - 6681; Fungi - 2597; Plants - 2885; Viruses - 0; Other Eukaryotes - 2498 (source: NCBI BLink).  protein_id AT3G10190.1p  transcript_id AT3G10190.1  protein_id AT3G10190.1p  transcript_id AT3G10190.1  
At3g10195	chr3:003156928	0.0	C/3156928-3156976,3156630-3156826	AT3G10195.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G10195.1p  transcript_id AT3G10195.1  protein_id AT3G10195.1p  transcript_id AT3G10195.1  
At3g10200	chr3:003157618	0.0	W/3157618-3157759,3157956-3158370,3158442-3158731,3158803-3159180,3159261-3159507,3159616-3159757,3159855-3160016	AT3G10200.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product dehydration-responsive protein-related  note dehydration-responsive protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive protein-related (TAIR:AT5G04060.1); Has 593 Blast hits to 587 proteins in 96 species: Archae - 0; Bacteria - 132; Metazoa - 2; Fungi - 2; Plants - 447; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT3G10200.1p  transcript_id AT3G10200.1  protein_id AT3G10200.1p  transcript_id AT3G10200.1  
At3g10210	chr3:003161351	0.0	C/3161351-3161579,3160875-3161139,3160416-3160635	AT3G10210.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251); BEST Arabidopsis thaliana protein match is: Rho-GTPase-activating protein-related (TAIR:AT4G35750.1); Has 305 Blast hits to 305 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 230; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G10210.1p  transcript_id AT3G10210.1  protein_id AT3G10210.1p  transcript_id AT3G10210.1  
At3g10220	chr3:003161977	0.0	W/3161977-3162081,3162174-3162325,3162511-3162629,3162747-3162808,3162985-3163026,3163173-3163306,3163544-3163613,3163990-3164037	AT3G10220.1  CDS  go_component nucleus|GO:0005634|14617066|IDA  go_component nucleus|GO:0005634|15469496|IDA  go_component cytoplasm|GO:0005737|15469496|IDA  go_component phragmoplast|GO:0009524|15469496|IDA  go_process tubulin complex assembly|GO:0007021|11959844|ISS  go_function molecular_function|GO:0003674||ND  product tubulin folding cofactor B  note tubulin folding cofactor B; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: tubulin complex assembly; LOCATED IN: nucleus, phragmoplast, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytoskeleton-associated protein, CAP-Gly (InterPro:IPR000938); Has 1412 Blast hits to 1124 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 1093; Fungi - 181; Plants - 31; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT3G10220.1p  transcript_id AT3G10220.1  protein_id AT3G10220.1p  transcript_id AT3G10220.1  
At3g10230	chr3:003164340	0.0	C/3164340-3165449	AT3G10230.2  CDS  gene_syn LYC, LYCOPENE BETA-CYCLASE, LYCOPENE CYCLASE  gene LYC  function Encodes a protein with lycopene & 946;-cyclase activity. This enzyme uses the linear, symmetrical lycopene as substrate. However, unlike the & 949;-cyclase which adds only one ring, the & 946;-cyclase introduces a ring at both ends of lycopene to form the bicyclic &beta;-carotene.  go_component chloroplast|GO:0009507|8837512|TAS  go_process carotene biosynthetic process|GO:0016120|8837512|IGI  go_function lycopene beta cyclase activity|GO:0045436|8837512|IGI  product LYC (LYCOPENE CYCLASE); lycopene beta cyclase  note LYCOPENE CYCLASE (LYC); FUNCTIONS IN: lycopene beta cyclase activity; INVOLVED IN: carotene biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lycopene beta and epsilon cyclase (InterPro:IPR008671), Lycopene cyclase, beta and epsilon (InterPro:IPR010108); BEST Arabidopsis thaliana protein match is: LUT2 (LUTEIN DEFICIENT 2); lycopene epsilon cyclase (TAIR:AT5G57030.1); Has 956 Blast hits to 953 proteins in 139 species: Archae - 0; Bacteria - 170; Metazoa - 0; Fungi - 0; Plants - 254; Viruses - 0; Other Eukaryotes - 532 (source: NCBI BLink).  protein_id AT3G10230.2p  transcript_id AT3G10230.2  protein_id AT3G10230.2p  transcript_id AT3G10230.2  
At3g10230	chr3:003164340	0.0	C/3164340-3165845	AT3G10230.1  CDS  gene_syn LYC, LYCOPENE BETA-CYCLASE, LYCOPENE CYCLASE  gene LYC  function Encodes a protein with lycopene & 946;-cyclase activity. This enzyme uses the linear, symmetrical lycopene as substrate. However, unlike the & 949;-cyclase which adds only one ring, the & 946;-cyclase introduces a ring at both ends of lycopene to form the bicyclic &beta;-carotene.  go_component chloroplast|GO:0009507|8837512|TAS  go_process carotene biosynthetic process|GO:0016120|8837512|IGI  go_function lycopene beta cyclase activity|GO:0045436|8837512|IGI  product LYC (LYCOPENE CYCLASE); lycopene beta cyclase  note LYCOPENE CYCLASE (LYC); FUNCTIONS IN: lycopene beta cyclase activity; INVOLVED IN: carotene biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lycopene beta and epsilon cyclase (InterPro:IPR008671), Lycopene cyclase, beta and epsilon (InterPro:IPR010108); BEST Arabidopsis thaliana protein match is: LUT2 (LUTEIN DEFICIENT 2); lycopene epsilon cyclase (TAIR:AT5G57030.1); Has 1243 Blast hits to 1240 proteins in 188 species: Archae - 19; Bacteria - 229; Metazoa - 0; Fungi - 5; Plants - 264; Viruses - 0; Other Eukaryotes - 726 (source: NCBI BLink).  protein_id AT3G10230.1p  transcript_id AT3G10230.1  protein_id AT3G10230.1p  transcript_id AT3G10230.1  
At3g10240	chr3:003166698	0.0	W/3166698-3167867	AT3G10240.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box protein-related  note F-box protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G47790.1); Has 1211 Blast hits to 1193 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1211; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G10240.1p  transcript_id AT3G10240.1  protein_id AT3G10240.1p  transcript_id AT3G10240.1  
At3g10250	chr3:003170371	0.0	C/3170371-3170418,3170150-3170255,3169617-3169799,3168852-3169337,3168596-3168682,3168371-3168435	AT3G10250.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04090.2); Has 135 Blast hits to 135 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT3G10250.1p  transcript_id AT3G10250.1  protein_id AT3G10250.1p  transcript_id AT3G10250.1  
At3g10250	chr3:003170371	0.0	C/3170371-3170418,3170150-3170255,3169617-3169799,3168852-3169337,3168596-3168682,3168371-3168435	AT3G10250.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04090.2); Has 135 Blast hits to 135 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT3G10250.2p  transcript_id AT3G10250.2  protein_id AT3G10250.2p  transcript_id AT3G10250.2  
At3g10260	chr3:003172328	0.0	C/3172328-3172508,3172073-3172253,3171847-3171988,3171675-3171744,3171413-3171582	AT3G10260.1  CDS  go_component mitochondrion|GO:0005739|14671022|IDA  go_component endoplasmic reticulum|GO:0005783||ISS  product reticulon family protein  note reticulon family protein; LOCATED IN: mitochondrion, endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: reticulon family protein (RTNLB6) (TAIR:AT3G61560.1); Has 821 Blast hits to 821 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 561; Fungi - 0; Plants - 251; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G10260.1p  transcript_id AT3G10260.1  protein_id AT3G10260.1p  transcript_id AT3G10260.1  
At3g10260	chr3:003172328	0.0	C/3172328-3172508,3172073-3172253,3171847-3171988,3171675-3171744,3171413-3171582	AT3G10260.2  CDS  go_component mitochondrion|GO:0005739|14671022|IDA  go_component endoplasmic reticulum|GO:0005783||ISS  product reticulon family protein  note reticulon family protein; LOCATED IN: mitochondrion, endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: reticulon family protein (RTNLB6) (TAIR:AT3G61560.1); Has 821 Blast hits to 821 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 561; Fungi - 0; Plants - 251; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G10260.2p  transcript_id AT3G10260.2  protein_id AT3G10260.2p  transcript_id AT3G10260.2  
At3g10260	chr3:003172328	0.0	C/3172328-3172568,3172073-3172253,3171847-3171988,3171675-3171744,3171413-3171582	AT3G10260.3  CDS  go_component mitochondrion|GO:0005739|14671022|IDA  go_component endoplasmic reticulum|GO:0005783||ISS  product reticulon family protein  note reticulon family protein; LOCATED IN: mitochondrion, endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: reticulon family protein (RTNLB6) (TAIR:AT3G61560.1); Has 821 Blast hits to 821 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 561; Fungi - 0; Plants - 251; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G10260.3p  transcript_id AT3G10260.3  protein_id AT3G10260.3p  transcript_id AT3G10260.3  
At3g10270	chr3:003179088	0.0	C/3179088-3179156,3178827-3178907,3178627-3178740,3178212-3178268,3177954-3178055,3177463-3177622,3177303-3177379,3177054-3177164,3176643-3176713,3176229-3176370,3175965-3176060,3175730-3175828,3175487-3175615,3175159-3175273,3175010-3175077,3174809-3174922,3174616-3174732,3174473-3174526,3174284-3174389,3173968-3174098,3173805-3173873	AT3G10270.1  CDS  function Protein targeting to mitochondria is influenced by UTR sequences.  go_component nucleoid|GO:0009295|16326926|IDA  go_process DNA topological change|GO:0006265||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA topoisomerase (ATP-hydrolyzing) activity|GO:0003918||IEA  go_function ATP binding|GO:0005524||IEA  go_component cytoplasm|GO:0005737|16169894|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16169894|IDA  go_process DNA metabolic process|GO:0006259||ISS  go_process DNA topological change|GO:0006265||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA topoisomerase (ATP-hydrolyzing) activity|GO:0003918||ISS  go_function ATP binding|GO:0005524||ISS  product ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)  note ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing); FUNCTIONS IN: DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, ATP binding; INVOLVED IN: DNA topological change, DNA metabolic process; LOCATED IN: mitochondrion, nucleoid, cytoplasm; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: DNA topoisomerase, type IIA, conserved site (InterPro:IPR018522), DNA topoisomerase, type IIA, subunit B (InterPro:IPR000565), DNA topoisomerase, type IIA, subunit B, region 2 (InterPro:IPR013506), ATP-binding region, ATPase-like (InterPro:IPR003594), DNA topoisomerase, type IIA, subunit B or N-terminal (InterPro:IPR001241), DNA topoisomerase, type IIA, subunit B, C-terminal (InterPro:IPR002288), DNA topoisomerase, type IIA, subunit B or N-terminal, alpha-beta (InterPro:IPR013759), TOPRIM (InterPro:IPR006171), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721), DNA topoisomerase, type IIA, central (InterPro:IPR013760); BEST Arabidopsis thaliana protein match is: DNA topoisomerase, ATP-hydrolyzing, putative / DNA topoisomerase II, putative / DNA gyrase, putative (TAIR:AT5G04130.1); Has 23493 Blast hits to 21722 proteins in 4478 species: Archae - 75; Bacteria - 14053; Metazoa - 170; Fungi - 188; Plants - 62; Viruses - 70; Other Eukaryotes - 8875 (source: NCBI BLink).  protein_id AT3G10270.1p  transcript_id AT3G10270.1  protein_id AT3G10270.1p  transcript_id AT3G10270.1  
At3g10280	chr3:003180064	0.0	W/3180064-3180640,3180786-3181588	AT3G10280.1  CDS  gene_syn 3-KETOACYL-COA SYNTHASE 14, KCS14  gene KCS14  function Encodes KCS14, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_function catalytic activity|GO:0003824||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_process very-long-chain fatty acid metabolic process|GO:0000038|10074711|IDA  go_process fatty acid elongation|GO:0030497|10074711|IDA  go_process cuticle development|GO:0042335|10074711|IMP  go_function acyltransferase activity|GO:0008415||ISS  product KCS14 (3-KETOACYL-COA SYNTHASE 14); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups  note 3-KETOACYL-COA SYNTHASE 14 (KCS14); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: fatty acid elongation, very-long-chain fatty acid metabolic process, cuticle development; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: rosette leaf, cauline leaf, fruit, flower; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038), Chalcone and stilbene synthases, C-terminal (InterPro:IPR012328); BEST Arabidopsis thaliana protein match is: KCS13 (3-KETOACYL-COA SYNTHASE 13); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups (TAIR:AT2G46720.1); Has 1209 Blast hits to 1202 proteins in 248 species: Archae - 0; Bacteria - 342; Metazoa - 0; Fungi - 0; Plants - 796; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT3G10280.1p  transcript_id AT3G10280.1  protein_id AT3G10280.1p  transcript_id AT3G10280.1  
At3g10282	chr3:003181970	0.0	W/3181970-3183328	AT3G10282.1  pseudogenic_transcript  pseudo  function unknown pseudogene  
At3g10290	chr3:003184737	0.0	C/3184737-3185324,3184143-3184246,3183743-3183971,3183511-3183657	AT3G10290.1  CDS  go_function organic anion transmembrane transporter activity|GO:0008514||ISS  product phosphate translocator-related  note phosphate translocator-related; FUNCTIONS IN: organic anion transmembrane transporter activity; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: phosphate translocator-related (TAIR:AT5G04160.1); Has 1849 Blast hits to 1847 proteins in 197 species: Archae - 4; Bacteria - 31; Metazoa - 571; Fungi - 289; Plants - 729; Viruses - 0; Other Eukaryotes - 225 (source: NCBI BLink).  protein_id AT3G10290.1p  transcript_id AT3G10290.1  protein_id AT3G10290.1p  transcript_id AT3G10290.1  
At3g10300	chr3:003186436	0.0	W/3186436-3187096,3187400-3187446,3187559-3187734,3187826-3187844,3187967-3188071	AT3G10300.3  CDS  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT5G04170.1); Has 33639 Blast hits to 18340 proteins in 837 species: Archae - 0; Bacteria - 2811; Metazoa - 19727; Fungi - 3988; Plants - 3787; Viruses - 272; Other Eukaryotes - 3054 (source: NCBI BLink).  protein_id AT3G10300.3p  transcript_id AT3G10300.3  protein_id AT3G10300.3p  transcript_id AT3G10300.3  
At3g10300	chr3:003186436	0.0	W/3186436-3187096,3187400-3187446,3187559-3187746,3187967-3188075	AT3G10300.4  CDS  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT5G04170.1); Has 33677 Blast hits to 18283 proteins in 837 species: Archae - 0; Bacteria - 2815; Metazoa - 19689; Fungi - 3942; Plants - 3921; Viruses - 273; Other Eukaryotes - 3037 (source: NCBI BLink).  protein_id AT3G10300.4p  transcript_id AT3G10300.4  protein_id AT3G10300.4p  transcript_id AT3G10300.4  
At3g10300	chr3:003186436	0.0	W/3186436-3187096,3187400-3187446,3187559-3187825	AT3G10300.2  CDS  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT5G04170.1); Has 33569 Blast hits to 18159 proteins in 823 species: Archae - 0; Bacteria - 2816; Metazoa - 19711; Fungi - 3979; Plants - 3744; Viruses - 271; Other Eukaryotes - 3048 (source: NCBI BLink).  protein_id AT3G10300.2p  transcript_id AT3G10300.2  protein_id AT3G10300.2p  transcript_id AT3G10300.2  
At3g10300	chr3:003186436	0.0	W/3186436-3187134	AT3G10300.1  CDS  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT5G04170.1); Has 31601 Blast hits to 16367 proteins in 772 species: Archae - 0; Bacteria - 2789; Metazoa - 18314; Fungi - 3836; Plants - 3554; Viruses - 271; Other Eukaryotes - 2837 (source: NCBI BLink).  protein_id AT3G10300.1p  transcript_id AT3G10300.1  protein_id AT3G10300.1p  transcript_id AT3G10300.1  
At3g10310	chr3:003190208	0.0	W/3190208-3190262,3190337-3190494,3190576-3190713,3190784-3191030,3191164-3191249,3191343-3191387,3191649-3191750,3191935-3192009,3192209-3192290,3192406-3192501,3192570-3192743,3192842-3192948,3193030-3193102,3193318-3193480,3193564-3193814,3193902-3194065,3194169-3194686,3194771-3195005	AT3G10310.1  CDS  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product ATP binding / microtubule motor  note ATP binding / microtubule motor; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATK4 (ARABIDOPSIS THALIANA KINESIN 4); ATPase/ microtubule binding / microtubule motor (TAIR:AT5G27000.1); Has 8181 Blast hits to 7555 proteins in 253 species: Archae - 0; Bacteria - 0; Metazoa - 4188; Fungi - 962; Plants - 928; Viruses - 0; Other Eukaryotes - 2103 (source: NCBI BLink).  protein_id AT3G10310.1p  transcript_id AT3G10310.1  protein_id AT3G10310.1p  transcript_id AT3G10310.1  
At3g10320	chr3:003196895	0.0	C/3196895-3197111,3196723-3196794,3195441-3196636	AT3G10320.1  CDS  go_function transferase activity, transferring glycosyl groups|GO:0016757||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product transferase, transferring glycosyl groups  note transferase, transferring glycosyl groups; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycosyltransferase AER61, uncharacterized (InterPro:IPR007657); BEST Arabidopsis thaliana protein match is: transferase, transferring glycosyl groups (TAIR:AT2G41640.1); Has 412 Blast hits to 411 proteins in 78 species: Archae - 0; Bacteria - 14; Metazoa - 113; Fungi - 6; Plants - 245; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT3G10320.1p  transcript_id AT3G10320.1  protein_id AT3G10320.1p  transcript_id AT3G10320.1  
At3g10330	chr3:003199907	0.0	W/3199907-3200259,3200609-3200633,3200754-3200883,3200971-3201101,3201174-3201262,3201355-3201431,3201509-3201642	AT3G10330.1  CDS  go_process transcription initiation|GO:0006352||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process translational initiation|GO:0006413||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function transcription regulator activity|GO:0030528||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_function RNA polymerase II transcription factor activity|GO:0003702||ISS  product transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2)  note transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2); FUNCTIONS IN: protein binding, RNA polymerase II transcription factor activity, transcription regulator activity, zinc ion binding, translation initiation factor activity; INVOLVED IN: translational initiation, regulation of transcription, DNA-dependent, transcription initiation, regulation of transcription; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Cyclin-like (InterPro:IPR011028), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-related (InterPro:IPR013763), Zinc finger, TFIIB-type (InterPro:IPR013137), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: TFIIB (TRANSCRIPTION FACTOR II B); RNA polymerase II transcription factor/ protein binding / transcription regulator/ translation initiation factor/ zinc ion binding (TAIR:AT2G41630.1); Has 1521 Blast hits to 1508 proteins in 255 species: Archae - 348; Bacteria - 0; Metazoa - 268; Fungi - 189; Plants - 107; Viruses - 10; Other Eukaryotes - 599 (source: NCBI BLink).  protein_id AT3G10330.1p  transcript_id AT3G10330.1  protein_id AT3G10330.1p  transcript_id AT3G10330.1  
At3g10340	chr3:003204260	0.0	W/3204260-3204633,3205956-3206603,3206708-3207809	AT3G10340.1  CDS  gene_syn PAL4, Phenylalanine ammonia-lyase 4  gene PAL4  go_component cytoplasm|GO:0005737||IEA  go_process L-phenylalanine catabolic process|GO:0006559||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function catalytic activity|GO:0003824||IEA  go_function ammonia ligase activity|GO:0016211||IEA  go_function ammonia-lyase activity|GO:0016841||IEA  product PAL4 (Phenylalanine ammonia-lyase 4); ammonia ligase/ ammonia-lyase/ catalytic  note Phenylalanine ammonia-lyase 4 (PAL4); FUNCTIONS IN: ammonia-lyase activity, ammonia ligase activity, catalytic activity; INVOLVED IN: L-phenylalanine catabolic process, biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Phenylalanine/histidine ammonia-lyase (InterPro:IPR001106), L-Aspartase-like (InterPro:IPR008948), Phenylalanine ammonia-lyase (InterPro:IPR005922); BEST Arabidopsis thaliana protein match is: pal1 (Phe ammonia lyase 1); phenylalanine ammonia-lyase (TAIR:AT2G37040.1); Has 3125 Blast hits to 3120 proteins in 832 species: Archae - 21; Bacteria - 1672; Metazoa - 68; Fungi - 91; Plants - 781; Viruses - 0; Other Eukaryotes - 492 (source: NCBI BLink).  protein_id AT3G10340.1p  transcript_id AT3G10340.1  protein_id AT3G10340.1p  transcript_id AT3G10340.1  
At3g10350	chr3:003208310	0.0	W/3208310-3208502,3208596-3208807,3208906-3208968,3209064-3209174,3209385-3209459,3209542-3209610,3209689-3209754,3209868-3209942,3210017-3210115,3210250-3210384,3210541-3210678	AT3G10350.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process cellular metal ion homeostasis|GO:0006875||IEA  go_function ATP binding|GO:0005524||IEA  go_component membrane|GO:0016020||ISS  go_process anion transport|GO:0006820||ISS  go_function ATP binding|GO:0005524||ISS  product anion-transporting ATPase family protein  note anion-transporting ATPase family protein; FUNCTIONS IN: ATP binding; INVOLVED IN: cellular metal ion homeostasis, anion transport; LOCATED IN: chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, anion-transporting (InterPro:IPR003348); BEST Arabidopsis thaliana protein match is: anion-transporting ATPase family protein (TAIR:AT5G60730.1); Has 1736 Blast hits to 1472 proteins in 461 species: Archae - 116; Bacteria - 1153; Metazoa - 110; Fungi - 90; Plants - 58; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink).  protein_id AT3G10350.1p  transcript_id AT3G10350.1  protein_id AT3G10350.1p  transcript_id AT3G10350.1  
At3g10360	chr3:003214452	0.0	C/3214452-3215144,3213552-3214350,3212898-3213423,3212678-3212819,3212487-3212594,3212152-3212364,3211927-3212037,3211650-3211844,3211400-3211574,3211276-3211325	AT3G10360.1  CDS  gene_syn APUM4, Arabidopsis Pumilio 4  gene APUM4  go_function RNA binding|GO:0003723||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product APUM4 (Arabidopsis Pumilio 4); RNA binding / binding  note Arabidopsis Pumilio 4 (APUM4); FUNCTIONS IN: RNA binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Nucleic acid binding NABP (InterPro:IPR012940), Pumilio RNA-binding region (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: APUM1 (Arabidopsis Pumilio 1); RNA binding / binding (TAIR:AT2G29200.1); Has 2567 Blast hits to 1403 proteins in 174 species: Archae - 0; Bacteria - 4; Metazoa - 660; Fungi - 804; Plants - 438; Viruses - 0; Other Eukaryotes - 661 (source: NCBI BLink).  protein_id AT3G10360.1p  transcript_id AT3G10360.1  protein_id AT3G10360.1p  transcript_id AT3G10360.1  
At3g10370	chr3:003216502	0.0	W/3216502-3216865,3217164-3217637,3217727-3218058,3218163-3218323,3218398-3218656,3218728-3219027	AT3G10370.1  CDS  gene_syn SDP6, SUGAR-DEPENDENT 6  gene SDP6  function mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process glycerol metabolic process|GO:0006071||ISS  go_process glycerophosphate shuttle|GO:0006127|12586344|TAS  go_process glycerophosphate shuttle|GO:0006127|18599644|IMP  go_process glycerol catabolic process|GO:0019563|12586344|TAS  go_process glycerol catabolic process|GO:0019563|18599644|IMP  go_function glycerol-3-phosphate dehydrogenase activity|GO:0004368|12586344|IDA  go_function glycerol-3-phosphate dehydrogenase activity|GO:0004368||ISS  product SDP6 (SUGAR-DEPENDENT 6); glycerol-3-phosphate dehydrogenase  note SUGAR-DEPENDENT 6 (SDP6); FUNCTIONS IN: glycerol-3-phosphate dehydrogenase activity; INVOLVED IN: glycerophosphate shuttle, glycerol metabolic process, glycerol catabolic process; LOCATED IN: mitochondrion, mitochondrial inner membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: FAD dependent oxidoreductase (InterPro:IPR006076), FAD-dependent glycerol-3-phosphate dehydrogenase (InterPro:IPR000447); Has 4480 Blast hits to 4472 proteins in 1031 species: Archae - 35; Bacteria - 2557; Metazoa - 224; Fungi - 111; Plants - 23; Viruses - 0; Other Eukaryotes - 1530 (source: NCBI BLink).  protein_id AT3G10370.1p  transcript_id AT3G10370.1  protein_id AT3G10370.1p  transcript_id AT3G10370.1  
At3g10380	chr3:003228315	0.0	C/3228315-3228356,3227801-3228013,3227334-3227507,3226996-3227100,3226663-3226772,3226337-3226516,3225800-3225944,3225611-3225717,3224963-3225270,3224717-3224877,3224503-3224618,3223936-3224006,3223728-3223858,3223596-3223645,3223346-3223446,3222843-3222952,3222554-3222661,3221924-3222106,3221759-3221844,3221205-3221376,3221029-3221106,3220646-3220747,3220444-3220518,3220273-3220368,3220120-3220169,3219922-3220009	AT3G10380.1  CDS  gene_syn ATSEC8, SEC8, SUBUNIT OF EXOCYST COMPLEX 8  gene SEC8  function Subunit of the Putative Arabidopsis Exocyst Complex  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component exocyst|GO:0000145|18492870|IDA  go_process pollen germination|GO:0009846|18492870|IGI  go_process pollen tube growth|GO:0009860|18492870|IGI  product SEC8 (SUBUNIT OF EXOCYST COMPLEX 8)  note SUBUNIT OF EXOCYST COMPLEX 8 (SEC8); INVOLVED IN: pollen germination, pollen tube growth; LOCATED IN: plasma membrane, exocyst; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec8 exocyst complex component specific domain (InterPro:IPR007191); Has 339 Blast hits to 250 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 194; Fungi - 94; Plants - 24; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT3G10380.1p  transcript_id AT3G10380.1  protein_id AT3G10380.1p  transcript_id AT3G10380.1  
At3g10390	chr3:003229293	0.0	W/3229293-3230898,3231056-3231814,3231904-3231949,3232029-3232222,3232296-3232345	AT3G10390.1  CDS  gene_syn FLD, FLOWERING LOCUS D  gene FLD  function Encodes a plant homolog of a SWIRM domain containing protein found in histone deacetylase complexes in mammals. Lesions in FLD result in hyperacetylation of histones in FLC chromatin, up-regulation of FLC expression and extremely delayed flowering. FLD plays a key role in regulating the reproductive competence of the shoot and results in different developmental phase transitions in Arabidopsis.  go_component chloroplast|GO:0009507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process positive regulation of flower development|GO:0009911||IMP  go_process histone deacetylation|GO:0016575|14593187|IMP  go_function amine oxidase activity|GO:0008131||ISS  product FLD (FLOWERING LOCUS D); amine oxidase/ electron carrier/ oxidoreductase  note FLOWERING LOCUS D (FLD); FUNCTIONS IN: electron carrier activity, amine oxidase activity, oxidoreductase activity; INVOLVED IN: positive regulation of flower development, histone deacetylation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), SWIRM (InterPro:IPR007526); BEST Arabidopsis thaliana protein match is: LDL1 (LSD1-LIKE1); amine oxidase/ electron carrier/ oxidoreductase (TAIR:AT1G62830.1); Has 4678 Blast hits to 4338 proteins in 695 species: Archae - 23; Bacteria - 1616; Metazoa - 1302; Fungi - 364; Plants - 306; Viruses - 0; Other Eukaryotes - 1067 (source: NCBI BLink).  protein_id AT3G10390.1p  transcript_id AT3G10390.1  protein_id AT3G10390.1p  transcript_id AT3G10390.1  
At3g10400	chr3:003232636	0.0	W/3232636-3233421	AT3G10400.1  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Ribonucleoprotein, BRUNO-like (InterPro:IPR015903), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: ATSC35; RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT5G64200.2); Has 14983 Blast hits to 12579 proteins in 573 species: Archae - 0; Bacteria - 919; Metazoa - 8149; Fungi - 1881; Plants - 2354; Viruses - 18; Other Eukaryotes - 1662 (source: NCBI BLink).  protein_id AT3G10400.1p  transcript_id AT3G10400.1  protein_id AT3G10400.1p  transcript_id AT3G10400.1  
At3g10405	chr3:003234855	0.0	C/3234855-3235118,3234717-3234758,3234596-3234637,3234422-3234505,3234267-3234354,3234085-3234182,3233978-3233998	AT3G10405.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process pollen development|GO:0009555|19237690|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen development; LOCATED IN: chloroplast; Has 21 Blast hits to 21 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G10405.1p  transcript_id AT3G10405.1  protein_id AT3G10405.1p  transcript_id AT3G10405.1  
At3g10410	chr3:003237726	0.0	C/3237726-3238063,3237362-3237530,3237156-3237275,3236822-3236965,3236597-3236747,3236422-3236510,3235995-3236253,3235771-3235904,3235518-3235664	AT3G10410.1  CDS  gene_syn scpl49, serine carboxypeptidase-like 49  gene scpl49  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl49 (serine carboxypeptidase-like 49); serine-type carboxypeptidase  note serine carboxypeptidase-like 49 (scpl49); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl48 (serine carboxypeptidase-like 48); serine-type carboxypeptidase (TAIR:AT3G45010.1); Has 2453 Blast hits to 2354 proteins in 260 species: Archae - 0; Bacteria - 98; Metazoa - 602; Fungi - 570; Plants - 872; Viruses - 0; Other Eukaryotes - 311 (source: NCBI BLink).  protein_id AT3G10410.1p  transcript_id AT3G10410.1  protein_id AT3G10410.1p  transcript_id AT3G10410.1  
At3g10415	chr3:003238367	0.0	C/3238367-3238402	AT3G10415.1  tRNA  gene_syn 60242.TRNA-TYR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT3G10415.1  
At3g10420	chr3:003239307	0.0	W/3239307-3239783,3239921-3240135,3240227-3240377,3240466-3240657,3240742-3240904,3241000-3241244,3241371-3241547,3241641-3241805,3242005-3242274	AT3G10420.2  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  product sporulation protein-related  note sporulation protein-related; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: ATP binding / ATP-dependent peptidase/ nucleoside-triphosphatase/ nucleotide binding / serine-type endopeptidase (TAIR:AT1G73170.1); Has 837 Blast hits to 828 proteins in 331 species: Archae - 16; Bacteria - 586; Metazoa - 12; Fungi - 5; Plants - 64; Viruses - 0; Other Eukaryotes - 154 (source: NCBI BLink).  protein_id AT3G10420.2p  transcript_id AT3G10420.2  protein_id AT3G10420.2p  transcript_id AT3G10420.2  
At3g10420	chr3:003239307	0.0	W/3239307-3239783,3239921-3240135,3240227-3240377,3240466-3240657,3240742-3240904,3241000-3241244,3241371-3241571	AT3G10420.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  product sporulation protein-related  note sporulation protein-related; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: ATP binding / ATP-dependent peptidase/ nucleoside-triphosphatase/ nucleotide binding / serine-type endopeptidase (TAIR:AT1G73170.1); Has 819 Blast hits to 810 proteins in 331 species: Archae - 16; Bacteria - 586; Metazoa - 12; Fungi - 5; Plants - 63; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).  protein_id AT3G10420.1p  transcript_id AT3G10420.1  protein_id AT3G10420.1p  transcript_id AT3G10420.1  
At3g10430	chr3:003242750	0.0	C/3242750-3243862	AT3G10430.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (FBX15) (TAIR:AT4G04690.1); Has 1064 Blast hits to 1052 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1062; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G10430.1p  transcript_id AT3G10430.1  protein_id AT3G10430.1p  transcript_id AT3G10430.1  
At3g10439	chr3:003245231	0.0	C/3245231-3245329	AT3G10439.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G10439.1p  transcript_id AT3G10439.1  protein_id AT3G10439.1p  transcript_id AT3G10439.1  
At3g10440	chr3:003245376	0.0	W/3245376-3245421,3245769-3245956,3246054-3246091,3246177-3246273,3246364-3246387,3246476-3246544,3246663-3246704,3246804-3246870,3246981-3247038,3247126-3247290,3247386-3247490,3247598-3247672,3247778-3247885,3247953-3248039,3248149-3248232,3248323-3248427,3248543-3248626,3248711-3248987	AT3G10440.1  CDS  go_component chromosome, centromeric region|GO:0000775||IEA  go_component nucleus|GO:0005634||IEA  go_process meiotic chromosome segregation|GO:0045132||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: meiotic chromosome segregation; LOCATED IN: chromosome, centromeric region, nucleus; CONTAINS InterPro DOMAIN/s: Shugoshin, C-terminal (InterPro:IPR011515); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04320.2); Has 749 Blast hits to 646 proteins in 110 species: Archae - 0; Bacteria - 31; Metazoa - 297; Fungi - 46; Plants - 39; Viruses - 0; Other Eukaryotes - 336 (source: NCBI BLink).  protein_id AT3G10440.1p  transcript_id AT3G10440.1  protein_id AT3G10440.1p  transcript_id AT3G10440.1  
At3g10450	chr3:003249544	0.0	W/3249544-3249680,3249778-3249923,3250364-3250440,3250515-3250637,3250721-3250823,3250917-3250954,3251046-3251147,3251232-3251318,3251405-3251473,3251538-3251609,3251695-3251813,3251900-3252013,3252103-3252148,3252240-3252320	AT3G10450.1  CDS  gene_syn SCPL7, SERINE CARBOXYPEPTIDASE-LIKE 7  gene SCPL7  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product SCPL7 (SERINE CARBOXYPEPTIDASE-LIKE 7); serine-type carboxypeptidase  note SERINE CARBOXYPEPTIDASE-LIKE 7 (SCPL7); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: scpl2 (serine carboxypeptidase-like 2); serine-type carboxypeptidase (TAIR:AT1G73300.1); Has 2836 Blast hits to 2763 proteins in 357 species: Archae - 0; Bacteria - 378; Metazoa - 576; Fungi - 552; Plants - 992; Viruses - 0; Other Eukaryotes - 338 (source: NCBI BLink).  protein_id AT3G10450.1p  transcript_id AT3G10450.1  protein_id AT3G10450.1p  transcript_id AT3G10450.1  
At3g10450	chr3:003249770	0.0	W/3249770-3249923,3250364-3250440,3250515-3250637,3250721-3250823,3250917-3250954,3251046-3251147,3251232-3251318,3251405-3251473,3251538-3251609,3251695-3251813,3251900-3252013,3252103-3252148,3252240-3252320	AT3G10450.2  CDS  gene_syn SCPL7, SERINE CARBOXYPEPTIDASE-LIKE 7  gene SCPL7  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product SCPL7 (SERINE CARBOXYPEPTIDASE-LIKE 7); serine-type carboxypeptidase  note SERINE CARBOXYPEPTIDASE-LIKE 7 (SCPL7); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: scpl2 (serine carboxypeptidase-like 2); serine-type carboxypeptidase (TAIR:AT1G73300.1); Has 2821 Blast hits to 2752 proteins in 355 species: Archae - 0; Bacteria - 374; Metazoa - 574; Fungi - 552; Plants - 987; Viruses - 0; Other Eukaryotes - 334 (source: NCBI BLink).  protein_id AT3G10450.2p  transcript_id AT3G10450.2  protein_id AT3G10450.2p  transcript_id AT3G10450.2  
At3g10460	chr3:003255802	0.0	W/3255802-3256200	AT3G10460.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product self-incompatibility protein-related  note self-incompatibility protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04347.1); Has 48 Blast hits to 48 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G10460.1p  transcript_id AT3G10460.1  protein_id AT3G10460.1p  transcript_id AT3G10460.1  
At3g10470	chr3:003260424	0.0	W/3260424-3261620	AT3G10470.1  CDS  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT5G04390.1); Has 2315 Blast hits to 1927 proteins in 110 species: Archae - 0; Bacteria - 4; Metazoa - 678; Fungi - 37; Plants - 589; Viruses - 0; Other Eukaryotes - 1007 (source: NCBI BLink).  protein_id AT3G10470.1p  transcript_id AT3G10470.1  protein_id AT3G10470.1p  transcript_id AT3G10470.1  
At3g10480	chr3:003264410	0.0	W/3264410-3264629,3264820-3264849,3264931-3264999,3265104-3265381,3265473-3265658,3265802-3265893,3266005-3266050,3266122-3266781	AT3G10480.3  CDS  gene_syn ANAC050, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 50  gene ANAC050  go_process regulation of transcription|GO:0045449||IEA  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product no apical meristem (NAM) family protein  note ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 50 (ANAC050); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac052 (Arabidopsis NAC domain containing protein 52); transcription factor (TAIR:AT3G10490.2).  protein_id AT3G10480.3p  transcript_id AT3G10480.3  protein_id AT3G10480.3p  transcript_id AT3G10480.3  
At3g10480	chr3:003264410	0.0	W/3264410-3264629,3265104-3265381,3265473-3265658,3266122-3266781	AT3G10480.1  CDS  gene_syn ANAC050, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 50  gene ANAC050  go_process regulation of transcription|GO:0045449||IEA  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product no apical meristem (NAM) family protein  note ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 50 (ANAC050); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac052 (Arabidopsis NAC domain containing protein 52); transcription factor (TAIR:AT3G10490.2); Has 1719 Blast hits to 1708 proteins in 79 species: Archae - 0; Bacteria - 5; Metazoa - 32; Fungi - 8; Plants - 1608; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT3G10480.1p  transcript_id AT3G10480.1  protein_id AT3G10480.1p  transcript_id AT3G10480.1  
At3g10480	chr3:003264410	0.0	W/3264410-3264629,3265104-3265381,3265476-3265658,3266122-3266781	AT3G10480.2  CDS  gene_syn ANAC050, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 50  gene ANAC050  go_process regulation of transcription|GO:0045449||IEA  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product no apical meristem (NAM) family protein  note ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 50 (ANAC050); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac052 (Arabidopsis NAC domain containing protein 52); transcription factor (TAIR:AT3G10490.2); Has 1712 Blast hits to 1701 proteins in 79 species: Archae - 0; Bacteria - 5; Metazoa - 32; Fungi - 8; Plants - 1603; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT3G10480.2p  transcript_id AT3G10480.2  protein_id AT3G10480.2p  transcript_id AT3G10480.2  
At3g10490	chr3:003268075	0.0	W/3268075-3268294,3268720-3268997,3269078-3269263,3269894-3269926	AT3G10490.1  CDS  gene_syn Arabidopsis NAC domain containing protein 51, Arabidopsis NAC domain containing protein 52, anac051, anac052  gene anac052  go_component nucleolus|GO:0005730|15496452|IDA  go_process multicellular organismal development|GO:0007275||ISS  go_process pollen development|GO:0009555|19237690|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac052 (Arabidopsis NAC domain containing protein 52); transcription factor  note Arabidopsis NAC domain containing protein 51 (anac051); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, pollen development; LOCATED IN: nucleolus; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: no apical meristem (NAM) family protein (TAIR:AT3G10480.1); Has 1601 Blast hits to 1599 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1601; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G10490.1p  transcript_id AT3G10490.1  protein_id AT3G10490.1p  transcript_id AT3G10490.1  
At3g10490	chr3:003268075	0.0	W/3268075-3268294,3268720-3268997,3269078-3269263,3269937-3270608	AT3G10490.2  CDS  gene_syn Arabidopsis NAC domain containing protein 51, Arabidopsis NAC domain containing protein 52, anac051, anac052  gene anac052  go_component nucleolus|GO:0005730|15496452|IDA  go_process multicellular organismal development|GO:0007275||ISS  go_process pollen development|GO:0009555|19237690|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac052 (Arabidopsis NAC domain containing protein 52); transcription factor  note Arabidopsis NAC domain containing protein 52 (anac052); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, pollen development; LOCATED IN: nucleolus; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: no apical meristem (NAM) family protein (TAIR:AT3G10480.1); Has 1982 Blast hits to 1951 proteins in 99 species: Archae - 0; Bacteria - 13; Metazoa - 63; Fungi - 13; Plants - 1609; Viruses - 4; Other Eukaryotes - 280 (source: NCBI BLink).  protein_id AT3G10490.2p  transcript_id AT3G10490.2  protein_id AT3G10490.2p  transcript_id AT3G10490.2  
At3g10500	chr3:003271718	0.0	W/3271718-3271883,3271976-3272253,3272332-3272514,3272702-3273241,3273309-3273432,3273529-3273887	AT3G10500.1  CDS  gene_syn Arabidopsis NAC domain containing protein 53, anac053  gene anac053  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac053 (Arabidopsis NAC domain containing protein 53); transcription factor  note Arabidopsis NAC domain containing protein 53 (anac053); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC2; transcription factor (TAIR:AT5G04410.1); Has 1637 Blast hits to 1630 proteins in 61 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 3; Plants - 1621; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G10500.1p  transcript_id AT3G10500.1  protein_id AT3G10500.1p  transcript_id AT3G10500.1  
At3g10510	chr3:003274882	0.0	C/3274882-3275551,3274220-3274665	AT3G10510.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G38940.1); Has 453 Blast hits to 439 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 453; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G10510.1p  transcript_id AT3G10510.1  protein_id AT3G10510.1p  transcript_id AT3G10510.1  
At3g10520	chr3:003277662	0.0	C/3277662-3277765,3277465-3277579,3276755-3276871,3276516-3276656	AT3G10520.1  CDS  gene_syn AHB2, ARABIDOPSIS HAEMOGLOBIN 2, ARATH GLB2, GLB2, HEMOGLOBIN, NON-SYMBIOTIC HAEMOGLOBIN 2, NSHB2  gene AHB2  function class 2 non-symbiotic hemoglobin  go_component cellular_component|GO:0005575||ND  go_process response to cytokinin stimulus|GO:0009735||IEP  go_function oxygen transporter activity|GO:0005344|9342391|ISS  product AHB2 (ARABIDOPSIS HAEMOGLOBIN 2); oxygen transporter  note ARABIDOPSIS HAEMOGLOBIN 2 (AHB2); FUNCTIONS IN: oxygen transporter activity; INVOLVED IN: response to cytokinin stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leghaemoglobin (InterPro:IPR001032), Globin-like (InterPro:IPR009050), Globin, subset (InterPro:IPR000971), Globin (InterPro:IPR012292); BEST Arabidopsis thaliana protein match is: AHB1 (ARABIDOPSIS HEMOGLOBIN 1); oxygen binding / oxygen transporter (TAIR:AT2G16060.1); Has 703 Blast hits to 666 proteins in 202 species: Archae - 0; Bacteria - 203; Metazoa - 177; Fungi - 22; Plants - 288; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT3G10520.1p  transcript_id AT3G10520.1  protein_id AT3G10520.1p  transcript_id AT3G10520.1  
At3g10525	chr3:003281576	0.0	C/3281576-3281962	AT3G10525.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: SIM (SIAMESE); cyclin-dependent protein kinase inhibitor (TAIR:AT5G04470.1); Has 23 Blast hits to 23 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G10525.1p  transcript_id AT3G10525.1  protein_id AT3G10525.1p  transcript_id AT3G10525.1  
At3g10526	chr3:003282467	0.0	W/3282467-3282637	AT3G10526.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G10526.1p  transcript_id AT3G10526.1  protein_id AT3G10526.1p  transcript_id AT3G10526.1  
At3g10530	chr3:003286277	0.0	W/3286277-3286336,3286426-3286491,3286577-3286666,3286868-3287000,3287144-3287262,3287354-3287421,3287514-3287562,3287645-3288670	AT3G10530.1  CDS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BING4, C-terminal (InterPro:IPR012952), WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: nucleotide binding / ubiquitin-protein ligase (TAIR:AT2G33340.3); Has 6810 Blast hits to 4312 proteins in 298 species: Archae - 16; Bacteria - 2174; Metazoa - 1948; Fungi - 1292; Plants - 310; Viruses - 0; Other Eukaryotes - 1070 (source: NCBI BLink).  protein_id AT3G10530.1p  transcript_id AT3G10530.1  protein_id AT3G10530.1p  transcript_id AT3G10530.1  
At3g10540	chr3:003289916	0.0	W/3289916-3290089,3290267-3290447,3290564-3290616,3290700-3290801,3290889-3290997,3291081-3291159,3291313-3291478,3291565-3291699,3291787-3291941,3292036-3292258,3292346-3292429	AT3G10540.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product 3-phosphoinositide-dependent protein kinase, putative  note 3-phosphoinositide-dependent protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein Kinase-1, 3-phosphoinositide dependent (InterPro:IPR015746), Protein kinase, core (InterPro:IPR000719), Pleckstrin homology-type (InterPro:IPR011993); BEST Arabidopsis thaliana protein match is: PDK1 (3 -PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1); 3-phosphoinositide-dependent protein kinase/ kinase/ phosphoinositide binding / protein binding / protein kinase (TAIR:AT5G04510.1); Has 93608 Blast hits to 92119 proteins in 3282 species: Archae - 79; Bacteria - 8637; Metazoa - 40327; Fungi - 8699; Plants - 17250; Viruses - 597; Other Eukaryotes - 18019 (source: NCBI BLink).  protein_id AT3G10540.1p  transcript_id AT3G10540.1  protein_id AT3G10540.1p  transcript_id AT3G10540.1  
At3g10550	chr3:003298336	0.0	C/3298336-3298452,3298089-3298157,3297863-3297937,3297626-3297697,3297437-3297506,3297115-3297164,3296745-3297034,3296465-3296538,3296299-3296362,3296111-3296176,3295699-3295798,3295499-3295612,3295213-3295382,3294972-3295056,3294487-3294705,3294311-3294370,3294151-3294215,3293780-3294059,3293210-3293692	AT3G10550.1  CDS  go_process dephosphorylation|GO:0016311||IEA  go_function protein tyrosine phosphatase activity|GO:0004725||IEA  go_function phosphatase activity|GO:0016791||IEA  go_component cellular_component|GO:0005575||ND  product phosphatase/ protein tyrosine phosphatase  note phosphatase/ protein tyrosine phosphatase; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity; INVOLVED IN: dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Myotubularin phosphatase (InterPro:IPR017906), GRAM (InterPro:IPR004182), Myotubularin-related (InterPro:IPR010569); BEST Arabidopsis thaliana protein match is: phosphatase/ protein tyrosine phosphatase (TAIR:AT5G04540.1); Has 1385 Blast hits to 1270 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 1083; Fungi - 91; Plants - 16; Viruses - 0; Other Eukaryotes - 195 (source: NCBI BLink).  protein_id AT3G10550.1p  transcript_id AT3G10550.1  protein_id AT3G10550.1p  transcript_id AT3G10550.1  
At3g10560	chr3:003299939	0.0	W/3299939-3301483	AT3G10560.1  CDS  gene_syn CYP77A7, CYTOCHROME P450, FAMILY 77, SUBFAMILY A, POLYPEPTIDE 7, UNE9, UNFERTILIZED EMBRYO SAC 9  gene UNE9  function member of CYP77A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process double fertilization forming a zygote and endosperm|GO:0009567|15634699|IMP  go_process pollen tube development|GO:0048868|19237690|IMP  go_function oxygen binding|GO:0019825||ISS  product UNE9 (UNFERTILIZED EMBRYO SAC 9); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note UNFERTILIZED EMBRYO SAC 9 (UNE9); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: double fertilization forming a zygote and endosperm, pollen tube development; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, embryo, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP77A9; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT5G04630.1); Has 23770 Blast hits to 23607 proteins in 1282 species: Archae - 22; Bacteria - 2473; Metazoa - 10345; Fungi - 4193; Plants - 5765; Viruses - 6; Other Eukaryotes - 966 (source: NCBI BLink).  protein_id AT3G10560.1p  transcript_id AT3G10560.1  protein_id AT3G10560.1p  transcript_id AT3G10560.1  
At3g10570	chr3:003302156	0.0	W/3302156-3303697	AT3G10570.1  CDS  gene_syn CYP77A6  gene CYP77A6  function member of CYP77A  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component mitochondrion|GO:0005739|11743114|IDA  go_function oxygen binding|GO:0019825||ISS  product CYP77A6; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP77A6; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: mitochondrion; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP77A4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT5G04660.1); Has 23764 Blast hits to 23553 proteins in 1277 species: Archae - 23; Bacteria - 2391; Metazoa - 10432; Fungi - 4192; Plants - 5733; Viruses - 6; Other Eukaryotes - 987 (source: NCBI BLink).  protein_id AT3G10570.1p  transcript_id AT3G10570.1  protein_id AT3G10570.1p  transcript_id AT3G10570.1  
At3g10572	chr3:003304346	0.0	W/3304346-3304389,3304716-3304892,3305055-3305132,3305426-3305699,3305787-3306094,3306186-3306306	AT3G10572.1  CDS  go_component nucleolus|GO:0005730|15610358|IDA  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product 3-phosphoinositide-dependent protein kinase-1, putative  note 3-phosphoinositide-dependent protein kinase-1, putative; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; Has 11 Blast hits to 11 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G10572.1p  transcript_id AT3G10572.1  protein_id AT3G10572.1p  transcript_id AT3G10572.1  
At3g10575	chr3:003306508	0.0	W/3306508-3307035	AT3G10575.1  pseudogenic_transcript  pseudo  gene_syn F13M14.14  note pseudogene, similar to putative 3-phosphoinositide-dependent protein kinase-1, similar to 3-phosphoinositide-dependent protein kinase-1 GB:AAD37165 (Arabidopsis thaliana); blastp match of 79% identity and 7.5e-31 P-value to GP|19571127|dbj|BAB86551.1||AP003566 putative 3-phosphoinositide-dependent protein kinase-1 {Oryza sativa (japonica cultivar-group)}  
At3g10580	chr3:003307923	0.0	C/3307923-3308230,3307083-3307638	AT3G10580.1  CDS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: leaf whorl, sepal, flower, leaf; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT4G09450.1); Has 788 Blast hits to 786 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 2; Plants - 711; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT3G10580.1p  transcript_id AT3G10580.1  protein_id AT3G10580.1p  transcript_id AT3G10580.1  
At3g10580	chr3:003307923	0.0	C/3307923-3308230,3307254-3307638,3307083-3307160	AT3G10580.2  CDS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: leaf whorl, sepal, flower, leaf; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT4G09450.1); Has 790 Blast hits to 788 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 2; Plants - 713; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT3G10580.2p  transcript_id AT3G10580.2  protein_id AT3G10580.2p  transcript_id AT3G10580.2  
At3g10585	chr3:003309122	0.0	C/3309122-3309429,3309044-3309077,3308697-3308873	AT3G10585.1  CDS  go_function DNA binding|GO:0003677||ISS  product myb family transcription factor / I-box binding factor-related protein  note myb family transcription factor / I-box binding factor-related protein; FUNCTIONS IN: DNA binding; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT3G10580.2); Has 416 Blast hits to 415 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 407; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G10585.1p  transcript_id AT3G10585.1  protein_id AT3G10585.1p  transcript_id AT3G10585.1  
At3g10590	chr3:003310956	0.0	C/3310956-3311311,3310424-3310688	AT3G10590.1  CDS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SANT, eukarya (InterPro:IPR017884), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT4G09450.1); Has 440 Blast hits to 439 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 403; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT3G10590.1p  transcript_id AT3G10590.1  protein_id AT3G10590.1p  transcript_id AT3G10590.1  
At3g10595	chr3:003312547	0.0	C/3312547-3312815,3311905-3312187	AT3G10595.1  CDS  go_function DNA binding|GO:0003677||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SANT, eukarya (InterPro:IPR017884); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT5G04760.1); Has 292 Blast hits to 292 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 0; Plants - 254; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT3G10595.1p  transcript_id AT3G10595.1  protein_id AT3G10595.1p  transcript_id AT3G10595.1  
At3g10600	chr3:003313969	0.0	W/3313969-3314368,3314467-3315035,3315128-3315359,3316609-3317162	AT3G10600.1  CDS  gene_syn CAT7, CATIONIC AMINO ACID TRANSPORTER 7  gene CAT7  function Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters.  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_process amino acid transport|GO:0006865||IEA  go_function cationic amino acid transmembrane transporter activity|GO:0015326||ISS  product CAT7 (CATIONIC AMINO ACID TRANSPORTER 7); cationic amino acid transmembrane transporter  note CATIONIC AMINO ACID TRANSPORTER 7 (CAT7); FUNCTIONS IN: cationic amino acid transmembrane transporter activity; INVOLVED IN: transport, amino acid transport; LOCATED IN: membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cationic amino acid transporter (InterPro:IPR015606), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease-associated region (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: CAT6 (CATIONIC AMINO ACID TRANSPORTER 6); amino acid transmembrane transporter/ basic amino acid transmembrane transporter/ cationic amino acid transmembrane transporter (TAIR:AT5G04770.1); Has 18136 Blast hits to 18075 proteins in 1258 species: Archae - 311; Bacteria - 13235; Metazoa - 1680; Fungi - 1580; Plants - 176; Viruses - 0; Other Eukaryotes - 1154 (source: NCBI BLink).  protein_id AT3G10600.1p  transcript_id AT3G10600.1  protein_id AT3G10600.1p  transcript_id AT3G10600.1  
At3g10610	chr3:003319459	0.0	W/3319459-3319881	AT3G10610.1  CDS  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S17 (RPS17C)  note 40S ribosomal protein S17 (RPS17C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S17e (InterPro:IPR001210), Ribosomal protein S17e, conserved site (InterPro:IPR018273); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S17 (RPS17B) (TAIR:AT2G05220.2); Has 727 Blast hits to 727 proteins in 256 species: Archae - 117; Bacteria - 0; Metazoa - 270; Fungi - 97; Plants - 83; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).  protein_id AT3G10610.1p  transcript_id AT3G10610.1  protein_id AT3G10610.1p  transcript_id AT3G10610.1  
At3g10620	chr3:003320263	0.0	W/3320263-3320493,3320572-3320622,3320937-3321029,3321126-3321220,3321293-3321407,3321500-3321565	AT3G10620.1  CDS  gene_syn ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 26, ATNUDX26  gene ATNUDX26  go_component chloroplast|GO:0009507|18815383|IDA  go_function bis(5 -nucleosyl)-tetraphosphatase (asymmetrical) activity|GO:0004081||ISS  go_function bis(5 -adenosyl)-pentaphosphatase activity|GO:0034432|18815383|IDA  product ATNUDX26 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 26); bis(5 -adenosyl)-pentaphosphatase/ bis(5 -nucleosyl)-tetraphosphatase (asymmetrical)  note ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 26 (ATNUDX26); FUNCTIONS IN: bis(5 -adenosyl)-pentaphosphatase activity, bis(5 -nucleosyl)-tetraphosphatase (asymmetrical) activity; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), NUDIX hydrolase, core (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: ATNUDX27 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 27); bis(5 -adenosyl)-pentaphosphatase/ bis(5 -nucleosyl)-tetraphosphatase (asymmetrical) (TAIR:AT5G06340.1); Has 3528 Blast hits to 3526 proteins in 752 species: Archae - 0; Bacteria - 1779; Metazoa - 13; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1695 (source: NCBI BLink).  protein_id AT3G10620.1p  transcript_id AT3G10620.1  protein_id AT3G10620.1p  transcript_id AT3G10620.1  
At3g10630	chr3:003321722	0.0	C/3321722-3323185	AT3G10630.1  CDS  go_process biosynthetic process|GO:0009058||IEA  go_component cellular_component|GO:0005575||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyl transferase family 1 protein  note glycosyl transferase family 1 protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); Has 2500 Blast hits to 2492 proteins in 519 species: Archae - 97; Bacteria - 1438; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 3; Other Eukaryotes - 935 (source: NCBI BLink).  protein_id AT3G10630.1p  transcript_id AT3G10630.1  protein_id AT3G10630.1p  transcript_id AT3G10630.1  
At3g10640	chr3:003324459	0.0	C/3324459-3324484,3324259-3324352,3324109-3324180,3323897-3324008,3323648-3323802,3323501-3323554	AT3G10640.2  CDS  gene_syn VPS60.1  gene VPS60.1  go_process vesicle-mediated transport|GO:0016192|16488176|ISS  product VPS60.1  note VPS60.1; INVOLVED IN: vesicle-mediated transport; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: VPS60.2 (TAIR:AT5G04850.1); Has 696 Blast hits to 696 proteins in 154 species: Archae - 0; Bacteria - 0; Metazoa - 301; Fungi - 185; Plants - 121; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT3G10640.2p  transcript_id AT3G10640.2  protein_id AT3G10640.2p  transcript_id AT3G10640.2  
At3g10640	chr3:003324837	0.0	C/3324837-3324905,3324459-3324610,3324259-3324352,3324109-3324180,3323897-3324008,3323648-3323802,3323501-3323554	AT3G10640.1  CDS  gene_syn VPS60.1  gene VPS60.1  go_process vesicle-mediated transport|GO:0016192|16488176|ISS  product VPS60.1  note VPS60.1; INVOLVED IN: vesicle-mediated transport; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: VPS60.2 (TAIR:AT5G04850.1); Has 839 Blast hits to 837 proteins in 158 species: Archae - 3; Bacteria - 0; Metazoa - 379; Fungi - 206; Plants - 139; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).  protein_id AT3G10640.1p  transcript_id AT3G10640.1  protein_id AT3G10640.1p  transcript_id AT3G10640.1  
At3g10650	chr3:003330504	0.0	C/3330504-3330819,3330126-3330172,3329910-3330022,3329469-3329655,3329072-3329365,3328914-3328991,3328214-3328828,3327507-3327979,3325562-3327368	AT3G10650.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: nucleoporin-related (TAIR:AT5G20200.1); Has 51621 Blast hits to 25162 proteins in 1378 species: Archae - 161; Bacteria - 11485; Metazoa - 15659; Fungi - 10121; Plants - 1099; Viruses - 600; Other Eukaryotes - 12496 (source: NCBI BLink).  protein_id AT3G10650.1p  transcript_id AT3G10650.1  protein_id AT3G10650.1p  transcript_id AT3G10650.1  
At3g10660	chr3:003333248	0.0	C/3333248-3334268,3333013-3333156,3332776-3332928,3332528-3332643,3332268-3332435,3331930-3332154,3331599-3331712	AT3G10660.1  CDS  gene_syn ATCPK2, CALMODULIN-DOMAIN PROTEIN KINASE CDPK ISOFORM 2, CPK2  gene CPK2  function predicted to encode calcium-dependent protein kinase and is localized to the ER. Protein is myristoylated in a cell-free extract. Changing the proposed myristoylated site, G residue in the amino terminal, to A prevented the meristoylation . The G to A mutation decreased AtCPK2 membrane association by approximately 50%.  go_component endoplasmic reticulum membrane|GO:0005789|11891256|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function protein serine/threonine kinase activity|GO:0004674||NAS  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  go_function kinase activity|GO:0016301||ISS  product CPK2 (CALMODULIN-DOMAIN PROTEIN KINASE CDPK ISOFORM 2); calmodulin-dependent protein kinase/ kinase/ protein serine/threonine kinase  note CALMODULIN-DOMAIN PROTEIN KINASE CDPK ISOFORM 2 (CPK2); FUNCTIONS IN: protein serine/threonine kinase activity, calmodulin-dependent protein kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: endoplasmic reticulum membrane; EXPRESSED IN: male gametophyte, flower, root, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CPK1 (CALCIUM DEPENDENT PROTEIN KINASE 1); calmodulin-dependent protein kinase/ kinase (TAIR:AT5G04870.1); Has 110444 Blast hits to 99160 proteins in 2988 species: Archae - 127; Bacteria - 10174; Metazoa - 46205; Fungi - 13203; Plants - 16943; Viruses - 560; Other Eukaryotes - 23232 (source: NCBI BLink).  protein_id AT3G10660.1p  transcript_id AT3G10660.1  protein_id AT3G10660.1p  transcript_id AT3G10660.1  
At3g10670	chr3:003336945	0.0	C/3336945-3337304,3336702-3336752,3336375-3336596,3336124-3336246,3335500-3335676,3335325-3335408	AT3G10670.1  CDS  gene_syn ATNAP7  gene ATNAP7  function Plastidic SufC-like ATP-binding cassette/ATPase essential for Arabidopsis embryogenesis. Involved in the biogenesis and/or repair of oxidatively damaged Fe S clusters. Expressed in embryos and meristems.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast|GO:0009507|15184673|IDA  go_process embryonic development ending in seed dormancy|GO:0009793|15184673|IMP  go_process thylakoid membrane organization|GO:0010027|15184673|IMP  go_process iron-sulfur cluster assembly|GO:0016226|15184673|IGI  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  go_function protein binding|GO:0005515|15611066|IPI  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|15184673|IDA  product ATNAP7; ATPase, coupled to transmembrane movement of substances / protein binding / transporter  note ATNAP7; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, protein binding, transporter activity; INVOLVED IN: embryonic development ending in seed dormancy, iron-sulfur cluster assembly, thylakoid membrane organization; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase SufC, SUF system FeS cluster assembly (InterPro:IPR010230), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATNAP13; transporter (TAIR:AT4G33460.1); Has 148853 Blast hits to 141489 proteins in 2277 species: Archae - 3106; Bacteria - 107859; Metazoa - 3225; Fungi - 2236; Plants - 1336; Viruses - 4; Other Eukaryotes - 31087 (source: NCBI BLink).  protein_id AT3G10670.1p  transcript_id AT3G10670.1  protein_id AT3G10670.1p  transcript_id AT3G10670.1  
At3g10680	chr3:003337773	0.0	W/3337773-3337911,3338012-3339345	AT3G10680.1  CDS  gene_syn T7M13.24  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product heat shock protein-related  note heat shock protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: leaf apex, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: RTM2 (RESTRICTED TEV MOVEMENT 2) (TAIR:AT5G04890.1); Has 9021 Blast hits to 5992 proteins in 564 species: Archae - 25; Bacteria - 804; Metazoa - 3514; Fungi - 638; Plants - 374; Viruses - 48; Other Eukaryotes - 3618 (source: NCBI BLink).  protein_id AT3G10680.1p  transcript_id AT3G10680.1  protein_id AT3G10680.1p  transcript_id AT3G10680.1  
At3g10690	chr3:003345819	0.0	C/3345819-3346243,3345655-3345724,3345491-3345556,3345275-3345376,3345042-3345086,3344867-3344965,3344641-3344727,3344437-3344507,3343840-3343948,3343672-3343734,3343457-3343522,3343273-3343361,3343023-3343071,3342783-3342869,3342588-3342681,3342132-3342202,3341957-3342046,3341441-3341566,3341197-3341354,3341017-3341098,3340746-3340910,3340567-3340668,3340338-3340474,3340127-3340244,3339996-3340050,3339812-3339911,3339612-3339738	AT3G10690.1  CDS  gene_syn T7M13.23  go_component nucleoid|GO:0009295|16326926|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process DNA metabolic process|GO:0006259||IEA  go_process DNA topological change|GO:0006265||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA topoisomerase activity|GO:0003916||IEA  go_function DNA topoisomerase (ATP-hydrolyzing) activity|GO:0003918||IEA  go_function ATP binding|GO:0005524||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function catalytic activity|GO:0003824||ISS  go_function ATP binding|GO:0005524||ISS  product DNA gyrase subunit A family protein  note DNA gyrase subunit A family protein; FUNCTIONS IN: DNA topoisomerase activity, DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, catalytic activity, ATP binding; INVOLVED IN: DNA topological change, DNA metabolic process; LOCATED IN: mitochondrion, chloroplast, nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA gyrase, subunit A (InterPro:IPR005743), DNA topoisomerase, type IIA, subunit A or C-terminal (InterPro:IPR002205), DNA topoisomerase, type IIA, subunit A or C-terminal, alpha-beta (InterPro:IPR013758), DNA topoisomerase, type IIA, subunit A, alpha-helical (InterPro:IPR013757), DNA topoisomerase, type IIA, central (InterPro:IPR013760), DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel (InterPro:IPR006691); BEST Arabidopsis thaliana protein match is: TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/ DNA-dependent ATPase (TAIR:AT3G23890.2); Has 16689 Blast hits to 15925 proteins in 1934 species: Archae - 49; Bacteria - 7502; Metazoa - 153; Fungi - 147; Plants - 53; Viruses - 64; Other Eukaryotes - 8721 (source: NCBI BLink).  protein_id AT3G10690.1p  transcript_id AT3G10690.1  protein_id AT3G10690.1p  transcript_id AT3G10690.1  
At3g10700	chr3:003350840	0.0	C/3350840-3350863,3350422-3350535,3350243-3350314,3349769-3349812,3349148-3349292,3348846-3348911,3348594-3348673,3348369-3348468,3347857-3348008,3347654-3347694,3347533-3347561,3347369-3347438,3347171-3347260,3346789-3347036	AT3G10700.1  CDS  function Encodes a GHMP kinase family protein. Based on gene trap line GT8007, the gene appears to be expressed in a petal and stamen-specific manner, between flower stages 8 to 11.  go_component cytoplasm|GO:0005737||IEA  go_process lactose catabolic process|GO:0005990||IEA  go_process galactose metabolic process|GO:0006012||IEA  go_process metabolic process|GO:0008152||IEA  go_process colanic acid biosynthetic process|GO:0009242||IEA  go_process phosphorylation|GO:0016310||IEA  go_process lactose catabolic process via UDP-galactose|GO:0019515||IEA  go_process carbohydrate phosphorylation|GO:0046835||IEA  go_function galactokinase activity|GO:0004335||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||IEA  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_function galactokinase activity|GO:0004335||ISS  go_function ATP binding|GO:0005524||ISS  product GHMP kinase family protein  note GHMP kinase family protein; FUNCTIONS IN: phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding, galactokinase activity; INVOLVED IN: in 7 processes; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galactokinase (InterPro:IPR000705), Mevalonate and galactokinase (InterPro:IPR006206), GHMP kinase (InterPro:IPR006204), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721), GHMP kinase, C-terminal (InterPro:IPR013750); Has 2049 Blast hits to 2020 proteins in 680 species: Archae - 29; Bacteria - 1145; Metazoa - 218; Fungi - 120; Plants - 64; Viruses - 0; Other Eukaryotes - 473 (source: NCBI BLink).  protein_id AT3G10700.1p  transcript_id AT3G10700.1  protein_id AT3G10700.1p  transcript_id AT3G10700.1  
At3g10710	chr3:003352289	0.0	W/3352289-3353297,3353561-3354237	AT3G10710.1  CDS  go_component cell wall|GO:0005618||IEA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase inhibitor (InterPro:IPR006501), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT5G04960.1); Has 1342 Blast hits to 1301 proteins in 180 species: Archae - 0; Bacteria - 241; Metazoa - 1; Fungi - 127; Plants - 973; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G10710.1p  transcript_id AT3G10710.1  protein_id AT3G10710.1p  transcript_id AT3G10710.1  
At3g10720	chr3:003355660	0.0	C/3355660-3355750,3355392-3355583,3354639-3355147	AT3G10720.1  CDS  go_component cell wall|GO:0005618||IEA  go_process cell wall modification|GO:0042545||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_process cell wall modification|GO:0042545||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase, putative  note pectinesterase, putative; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase, putative (TAIR:AT5G04970.1); Has 1214 Blast hits to 1189 proteins in 174 species: Archae - 0; Bacteria - 235; Metazoa - 1; Fungi - 129; Plants - 849; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G10720.1p  transcript_id AT3G10720.1  protein_id AT3G10720.1p  transcript_id AT3G10720.1  
At3g10720	chr3:003356781	0.0	C/3356781-3357581,3355660-3356017,3355392-3355583,3354639-3355147	AT3G10720.2  CDS  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_process cell wall modification|GO:0042545||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase, putative  note pectinesterase, putative; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase inhibitor (InterPro:IPR006501), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase, putative (TAIR:AT5G04970.1); Has 3431 Blast hits to 1956 proteins in 277 species: Archae - 0; Bacteria - 297; Metazoa - 196; Fungi - 470; Plants - 1442; Viruses - 376; Other Eukaryotes - 650 (source: NCBI BLink).  protein_id AT3G10720.2p  transcript_id AT3G10720.2  protein_id AT3G10720.2p  transcript_id AT3G10720.2  
At3g10730	chr3:003359443	0.0	C/3359443-3360522,3358556-3358843	AT3G10730.1  CDS  go_component nuclear envelope|GO:0005635|15469496|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component spindle|GO:0005819|15469496|IDA  go_component phragmoplast|GO:0009524|15469496|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product sad1/unc-84-like 2 family protein  note sad1/unc-84-like 2 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nuclear envelope, endoplasmic reticulum, spindle, phragmoplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sad1/UNC-like, C-terminal (InterPro:IPR012919); BEST Arabidopsis thaliana protein match is: sad1/unc-84 protein-related (TAIR:AT5G04990.1); Has 419 Blast hits to 416 proteins in 105 species: Archae - 4; Bacteria - 31; Metazoa - 294; Fungi - 27; Plants - 31; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT3G10730.1p  transcript_id AT3G10730.1  protein_id AT3G10730.1p  transcript_id AT3G10730.1  
At3g10740	chr3:003364379	0.0	C/3364379-3364573,3364231-3364285,3363901-3364103,3363679-3363800,3363422-3363575,3363230-3363299,3362943-3363088,3362819-3362864,3362676-3362728,3362454-3362598,3362253-3362371,3362095-3362166,3361902-3362005,3361764-3361820,3361494-3361683,3361272-3361418,3361031-3361189	AT3G10740.1  CDS  gene_syn ALPHA-L-ARABINOFURANOSIDASE, ALPHA-L-ARABINOFURANOSIDASE 1, ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 1, ARAF, ARAF1, ASD1, ATASD1  gene ASD1  function Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 51 of glycoside hydrolases. It may be involved in cell wall modification.  go_component vacuole|GO:0005773|15539469|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process xylan catabolic process|GO:0045493|15181203|IDA  go_function xylan 1,4-beta-xylosidase activity|GO:0009044|15181203|IDA  go_function alpha-N-arabinofuranosidase activity|GO:0046556|15181203|IDA  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product ASD1 (ALPHA-L-ARABINOFURANOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, acting on glycosyl bonds / xylan 1,4-beta-xylosidase  note ALPHA-L-ARABINOFURANOSIDASE 1 (ASD1); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xylan 1,4-beta-xylosidase activity, alpha-N-arabinofuranosidase activity; INVOLVED IN: xylan catabolic process; LOCATED IN: apoplast, vacuole, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-L-arabinofuranosidase, C-terminal (InterPro:IPR010720), Carbohydrate-binding, CenC-like (InterPro:IPR003305), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: ASD2 (ALPHA-L-ARABINOFURANOSIDASE 2); alpha-N-arabinofuranosidase/ hydrolase, acting on glycosyl bonds (TAIR:AT5G26120.1); Has 741 Blast hits to 731 proteins in 197 species: Archae - 0; Bacteria - 510; Metazoa - 0; Fungi - 102; Plants - 90; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT3G10740.1p  transcript_id AT3G10740.1  protein_id AT3G10740.1p  transcript_id AT3G10740.1  
At3g10745	chr3:003366331	0.0	C/3366331-3366430	AT3G10745.1  miRNA  gene_syn MICRORNA 158A, MIR158A  gene MIR158A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCCCAAAUGUAGACAAAGCA  go_component cellular_component|GO:0005575||ND  go_process gene silencing by miRNA|GO:0035195|15200956|TAS  go_function molecular_function|GO:0003674||ND  product MIR158A (MICRORNA 158A); miRNA  transcript_id AT3G10745.1  
At3g10750	chr3:003366927	0.0	W/3366927-3367612,3368056-3368269	AT3G10750.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G05080.1); Has 597 Blast hits to 573 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 597; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G10750.1p  transcript_id AT3G10750.1  protein_id AT3G10750.1p  transcript_id AT3G10750.1  
At3g10760	chr3:003369814	0.0	W/3369814-3370821	AT3G10760.1  CDS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT5G05090.1); Has 941 Blast hits to 938 proteins in 54 species: Archae - 0; Bacteria - 2; Metazoa - 25; Fungi - 6; Plants - 889; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT3G10760.1p  transcript_id AT3G10760.1  protein_id AT3G10760.1p  transcript_id AT3G10760.1  
At3g10770	chr3:003373945	0.0	C/3373945-3374026,3372901-3373555,3372573-3372812,3372461-3372485	AT3G10770.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Single-stranded nucleic acid binding R3H (InterPro:IPR001374); BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT5G05100.1); Has 286 Blast hits to 286 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 160; Fungi - 39; Plants - 85; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G10770.1p  transcript_id AT3G10770.1  protein_id AT3G10770.1p  transcript_id AT3G10770.1  
At3g10770	chr3:003373945	0.0	C/3373945-3374026,3372925-3373555,3372573-3372812,3372461-3372485	AT3G10770.2  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Single-stranded nucleic acid binding R3H (InterPro:IPR001374); BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT5G05100.1); Has 291 Blast hits to 291 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 165; Fungi - 39; Plants - 85; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G10770.2p  transcript_id AT3G10770.2  protein_id AT3G10770.2p  transcript_id AT3G10770.2  
At3g10780	chr3:003375161	0.0	W/3375161-3375370,3375721-3375946,3376025-3376097,3376190-3376334	AT3G10780.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_process intracellular protein transport|GO:0006886||ISS  go_function protein transmembrane transporter activity|GO:0008320||ISS  product emp24/gp25L/p24 family protein  note emp24/gp25L/p24 family protein; FUNCTIONS IN: protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: sperm cell, embryo, pedicel, pollen tube; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family protein (TAIR:AT1G09580.1); Has 1126 Blast hits to 1124 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 677; Fungi - 220; Plants - 125; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT3G10780.1p  transcript_id AT3G10780.1  protein_id AT3G10780.1p  transcript_id AT3G10780.1  
At3g10790	chr3:003377410	0.0	W/3377410-3378369	AT3G10790.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G04660.1); Has 695 Blast hits to 688 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 693; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G10790.1p  transcript_id AT3G10790.1  protein_id AT3G10790.1p  transcript_id AT3G10790.1  
At3g10800	chr3:003379326	0.0	W/3379326-3380901,3380979-3381430	AT3G10800.1  CDS  gene_syn BZIP28  gene BZIP28  function Encodes bZIP28, a putative membrane-tethered transcriptional factor. Up-regulated in response to heat; a bZIP28 null mutant has a heat-sensitive phenotype. bZIP28 has a similar domain structure to the mammalian ATF6 protein involved in the unfolded protein response (UPR), and shares a bZIP domain, transmembrane domain, and a canonical S1P cleavage site. The bZIP28 seems to be glycosylated in vivo. bZIP28 does not appear to be transcriptionally up-regulated by UPR-inducing tunicamycin (TM) treatment. But, the expression level of three UPR-related genes is reduced in TM-treated zip28 mutants relative to wild type seedlings. And several UPR genes are transcriptionally upregulated when an N-terminal portion of the bZIP28 protein is expressed using the 35S promoter. A myc:bZIP28 fusion protein appears to be cleaved, likely at a canonical S2 cleavage site, following a TM treatment or a DTT stress-inducing treatment, but not a salt treatment. A portion of the mGFP:bZIP28 protein present in root cells appears to translocate from the cytoplasm and ER to the nucleus following TM treatment.  go_component nucleus|GO:0005634|18156219|IDA  go_component nuclear envelope|GO:0005635|18849477|IDA  go_component nucleoplasm|GO:0005654|18849477|IDA  go_component cytoplasm|GO:0005737|18156219|IDA  go_component endoplasmic reticulum|GO:0005783|18156219|IDA  go_component endoplasmic reticulum|GO:0005783|18849477|IDA  go_component membrane|GO:0016020|18849477|IDA  go_component perinuclear region of cytoplasm|GO:0048471|18156219|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to unfolded protein|GO:0006986|18156219|IMP  go_process positive regulation of gene-specific transcription involved in unfolded protein response|GO:0006990|18156219|IMP  go_process response to heat|GO:0009408|18849477|IEP  go_process response to heat|GO:0009408|18849477|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  product BZIP28; DNA binding / transcription factor  note BZIP28; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to heat, response to unfolded protein, regulation of transcription, DNA-dependent, positive regulation of gene-specific transcription involved in unfolded protein response; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: BZIP17; DNA binding / transcription activator/ transcription factor (TAIR:AT2G40950.1); Has 1607 Blast hits to 1087 proteins in 152 species: Archae - 0; Bacteria - 218; Metazoa - 676; Fungi - 178; Plants - 293; Viruses - 4; Other Eukaryotes - 238 (source: NCBI BLink).  protein_id AT3G10800.1p  transcript_id AT3G10800.1  protein_id AT3G10800.1p  transcript_id AT3G10800.1  
At3g10810	chr3:003383996	0.0	C/3383996-3384227,3383321-3383433,3382846-3383217,3382019-3382718,3381848-3381921	AT3G10810.1  CDS  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G56590.2); Has 16608 Blast hits to 8225 proteins in 698 species: Archae - 58; Bacteria - 2941; Metazoa - 8112; Fungi - 1423; Plants - 932; Viruses - 67; Other Eukaryotes - 3075 (source: NCBI BLink).  protein_id AT3G10810.1p  transcript_id AT3G10810.1  protein_id AT3G10810.1p  transcript_id AT3G10810.1  
At3g10815	chr3:003385009	0.0	C/3385009-3385608	AT3G10815.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: RHC1A; protein binding / zinc ion binding (TAIR:AT2G40830.3); Has 6466 Blast hits to 6439 proteins in 206 species: Archae - 0; Bacteria - 6; Metazoa - 2263; Fungi - 533; Plants - 2601; Viruses - 7; Other Eukaryotes - 1056 (source: NCBI BLink).  protein_id AT3G10815.1p  transcript_id AT3G10815.1  protein_id AT3G10815.1p  transcript_id AT3G10815.1  
At3g10820	chr3:003387358	0.0	W/3387358-3387726,3387838-3387906,3388020-3388102,3388400-3388452,3388531-3388652,3388772-3388792,3388877-3389026	AT3G10820.1  CDS  go_component nucleus|GO:0005634||IEA  go_process transcription|GO:0006350||IEA  go_function DNA binding|GO:0003677||IEA  go_function protein binding|GO:0005515||IEA  go_function transcription regulator activity|GO:0030528||IEA  product DNA binding / protein binding / transcription regulator  note DNA binding / protein binding / transcription regulator; FUNCTIONS IN: protein binding, transcription regulator activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), TFIIS N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal (InterPro:IPR014765), Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal (InterPro:IPR010990); BEST Arabidopsis thaliana protein match is: transcription elongation factor-related (TAIR:AT5G05140.1); Has 460 Blast hits to 458 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 334; Fungi - 10; Plants - 101; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT3G10820.1p  transcript_id AT3G10820.1  protein_id AT3G10820.1p  transcript_id AT3G10820.1  
At3g10830	chr3:003390250	0.0	W/3390250-3390693	AT3G10830.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, D bilateral stage, E expanded cotyledon stage; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G10830.1p  transcript_id AT3G10830.1  protein_id AT3G10830.1p  transcript_id AT3G10830.1  
At3g10840	chr3:003393083	0.0	C/3393083-3393281,3392362-3392812,3391979-3392276,3391773-3391871,3391553-3391676,3391207-3391436	AT3G10840.1  CDS  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT1G15490.1); Has 4701 Blast hits to 4652 proteins in 739 species: Archae - 42; Bacteria - 3042; Metazoa - 265; Fungi - 67; Plants - 169; Viruses - 4; Other Eukaryotes - 1112 (source: NCBI BLink).  protein_id AT3G10840.1p  transcript_id AT3G10840.1  protein_id AT3G10840.1p  transcript_id AT3G10840.1  
At3g10845	chr3:003394009	0.0	W/3394009-3394042,3394128-3394201,3394276-3394347,3394432-3394482,3394846-3394934,3395131-3395188,3395315-3395364,3395448-3395565,3395710-3395796,3396095-3396175,3396264-3396349,3396571-3396646,3396767-3396828,3396910-3397024,3397112-3397200,3397279-3397302,3397421-3397526	AT3G10845.1  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: polyadenylate-binding protein, putative / PABP, putative (TAIR:AT1G45100.1); Has 1716 Blast hits to 1317 proteins in 197 species: Archae - 0; Bacteria - 16; Metazoa - 834; Fungi - 365; Plants - 376; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).  protein_id AT3G10845.1p  transcript_id AT3G10845.1  protein_id AT3G10845.1p  transcript_id AT3G10845.1  
At3g10850	chr3:003399476	0.0	C/3399476-3399522,3399257-3399379,3398690-3398851,3398491-3398569,3398231-3398344,3397952-3398128,3397756-3397830	AT3G10850.1  CDS  gene_syn GLX2-2, GLY2, GLYOXALASE 2-2, GLYOXALASE II  gene GLY2  function glyoxalase II cytoplasmic isozyme (Glx2-2) mRNA, complete  go_component endomembrane system|GO:0012505||IEA  go_component cytoplasm|GO:0005737||ISS  go_process methylglyoxal catabolic process to D-lactate|GO:0019243|9065762|TAS  go_function hydroxyacylglutathione hydrolase activity|GO:0004416|9065762|IDA  go_function hydroxyacylglutathione hydrolase activity|GO:0004416|9349270|IDA  product GLY2; hydroxyacylglutathione hydrolase  note GLY2; FUNCTIONS IN: hydroxyacylglutathione hydrolase activity; INVOLVED IN: methylglyoxal catabolic process to D-lactate; LOCATED IN: endomembrane system, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279), Hydroxyacylglutathione hydrolase (InterPro:IPR017782); BEST Arabidopsis thaliana protein match is: GLX2-4 (glyoxalase 2-4); hydrolase/ hydroxyacylglutathione hydrolase/ zinc ion binding (TAIR:AT1G06130.2); Has 9080 Blast hits to 9076 proteins in 1286 species: Archae - 142; Bacteria - 4569; Metazoa - 388; Fungi - 193; Plants - 124; Viruses - 0; Other Eukaryotes - 3664 (source: NCBI BLink).  protein_id AT3G10850.1p  transcript_id AT3G10850.1  protein_id AT3G10850.1p  transcript_id AT3G10850.1  
At3g10860	chr3:003399815	0.0	W/3399815-3399984,3400466-3400514	AT3G10860.1  CDS  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial respiratory chain complex III|GO:0005750|18189341|IDA  go_function ubiquinol-cytochrome-c reductase activity|GO:0008121||ISS  product ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative  note ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative; FUNCTIONS IN: ubiquinol-cytochrome-c reductase activity; LOCATED IN: mitochondrion, mitochondrial respiratory chain complex III, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative (TAIR:AT5G05370.1); Has 46 Blast hits to 46 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G10860.1p  transcript_id AT3G10860.1  protein_id AT3G10860.1p  transcript_id AT3G10860.1  
At3g10870	chr3:003402349	0.0	C/3402349-3402612,3402120-3402260,3401920-3402054,3401228-3401518	AT3G10870.1  CDS  gene_syn ARABIDOPSIS THALIANA METHYL ESTERASE 17, ATMES17, MES17, METHYL ESTERASE 17  gene MES17  function Encodes a methyl IAA esterase. Methyl IAA is believed to be an inactive form of auxin that needs to be demethylated to exert a biological effect. MES17 does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro. This gene is expressed in several tissues of seedlings and adult plants, with a higher relative level of expression in the seedling shoot apex and the adult stem.  go_component cellular_component|GO:0005575||ND  go_process indoleacetic acid conjugate metabolic process|GO:0033473|18467465|IDA  go_process shoot development|GO:0048367|18467465|IMP  go_function hydrolase activity|GO:0016787||ISS  go_function hydrolase activity, acting on ester bonds|GO:0016788|18467465|IDA  go_function methyl indole-3-acetate esterase activity|GO:0080030|18467465|IDA  product MES17 (METHYL ESTERASE 17); hydrolase/ hydrolase, acting on ester bonds / methyl indole-3-acetate esterase  note METHYL ESTERASE 17 (MES17); FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on ester bonds, methyl indole-3-acetate esterase activity; INVOLVED IN: shoot development, indoleacetic acid conjugate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: MES18 (METHYL ESTERASE 18); hydrolase/ hydrolase, acting on ester bonds / methyl indole-3-acetate esterase (TAIR:AT5G58310.1); Has 834 Blast hits to 834 proteins in 180 species: Archae - 0; Bacteria - 324; Metazoa - 1; Fungi - 8; Plants - 326; Viruses - 2; Other Eukaryotes - 173 (source: NCBI BLink).  protein_id AT3G10870.1p  transcript_id AT3G10870.1  protein_id AT3G10870.1p  transcript_id AT3G10870.1  
At3g10880	chr3:003406092	0.0	W/3406092-3406182,3406263-3407131	AT3G10880.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05180.1); Has 12674 Blast hits to 8971 proteins in 702 species: Archae - 244; Bacteria - 1206; Metazoa - 5925; Fungi - 945; Plants - 657; Viruses - 120; Other Eukaryotes - 3577 (source: NCBI BLink).  protein_id AT3G10880.1p  transcript_id AT3G10880.1  protein_id AT3G10880.1p  transcript_id AT3G10880.1  
At3g10890	chr3:003408671	0.0	C/3408671-3409000,3408369-3408563,3407961-3408295,3407455-3407839	AT3G10890.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product (1-4)-beta-mannan endohydrolase, putative  note (1-4)-beta-mannan endohydrolase, putative; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, embryo, petal, flower; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, family 5, conserved site (InterPro:IPR018087), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: (1-4)-beta-mannan endohydrolase, putative (TAIR:AT3G10900.1); Has 432 Blast hits to 430 proteins in 115 species: Archae - 4; Bacteria - 109; Metazoa - 0; Fungi - 116; Plants - 185; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT3G10890.1p  transcript_id AT3G10890.1  protein_id AT3G10890.1p  transcript_id AT3G10890.1  
At3g10900	chr3:003411744	0.0	C/3411744-3412070,3411478-3411672,3411019-3411353,3410252-3410621	AT3G10900.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product (1-4)-beta-mannan endohydrolase, putative  note (1-4)-beta-mannan endohydrolase, putative; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, family 5, conserved site (InterPro:IPR018087), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: (1-4)-beta-mannan endohydrolase family (TAIR:AT3G30540.1); Has 448 Blast hits to 442 proteins in 114 species: Archae - 4; Bacteria - 108; Metazoa - 0; Fungi - 118; Plants - 187; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT3G10900.1p  transcript_id AT3G10900.1  protein_id AT3G10900.1p  transcript_id AT3G10900.1  
At3g10910	chr3:003413068	0.0	C/3413068-3413613	AT3G10910.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G05280.1); Has 5962 Blast hits to 5941 proteins in 214 species: Archae - 0; Bacteria - 6; Metazoa - 1897; Fungi - 410; Plants - 2709; Viruses - 42; Other Eukaryotes - 898 (source: NCBI BLink).  protein_id AT3G10910.1p  transcript_id AT3G10910.1  protein_id AT3G10910.1p  transcript_id AT3G10910.1  
At3g10912	chr3:003413676	0.0	C/3413676-3413744	AT3G10912.1  CDS  gene_syn CPuORF63, Conserved peptide upstream open reading frame 63  gene CPuORF63  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF63 represents a conserved upstream opening reading frame relative to major ORF AT3G10910.1  product CPuORF63 (Conserved peptide upstream open reading frame 63)  note Conserved peptide upstream open reading frame 63 (CPuORF63); Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G10912.1p  transcript_id AT3G10912.1  protein_id AT3G10912.1p  transcript_id AT3G10912.1  
At3g10915	chr3:003416856	0.0	C/3416856-3417058,3416618-3416759,3416445-3416514,3416101-3416267	AT3G10915.3  CDS  go_component endoplasmic reticulum|GO:0005783||IEA  go_component endoplasmic reticulum|GO:0005783||ISS  go_process biological_process|GO:0008150||ND  product reticulon family protein  note reticulon family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: reticulon family protein (RTNLB6) (TAIR:AT3G61560.1); Has 689 Blast hits to 689 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 416; Fungi - 2; Plants - 263; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT3G10915.3p  transcript_id AT3G10915.3  protein_id AT3G10915.3p  transcript_id AT3G10915.3  
At3g10915	chr3:003417354	0.0	C/3417354-3417497,3417171-3417206,3417092-3417098,3416856-3417036,3416618-3416759,3416445-3416517,3416101-3416267	AT3G10915.5  CDS  go_component endoplasmic reticulum|GO:0005783||IEA  go_component endoplasmic reticulum|GO:0005783||ISS  go_process biological_process|GO:0008150||ND  product reticulon family protein  note reticulon family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: reticulon family protein (RTNLB11) (TAIR:AT3G19460.1).  protein_id AT3G10915.5p  transcript_id AT3G10915.5  protein_id AT3G10915.5p  transcript_id AT3G10915.5  
At3g10915	chr3:003417377	0.0	C/3417377-3417497,3416856-3417036,3416573-3416759	AT3G10915.1  CDS  go_component endoplasmic reticulum|GO:0005783||IEA  go_component endoplasmic reticulum|GO:0005783||ISS  go_process biological_process|GO:0008150||ND  product reticulon family protein  note reticulon family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: reticulon family protein (RTNLB12) (TAIR:AT3G54120.1); Has 245 Blast hits to 245 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 245; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G10915.1p  transcript_id AT3G10915.1  protein_id AT3G10915.1p  transcript_id AT3G10915.1  
At3g10915	chr3:003417377	0.0	C/3417377-3417497,3416856-3417036,3416618-3416759,3416445-3416514,3416101-3416267	AT3G10915.2  CDS  go_component endoplasmic reticulum|GO:0005783||IEA  go_component endoplasmic reticulum|GO:0005783||ISS  go_process biological_process|GO:0008150||ND  product reticulon family protein  note reticulon family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: reticulon family protein (RTNLB3) (TAIR:AT1G64090.1); Has 706 Blast hits to 706 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 427; Fungi - 2; Plants - 269; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT3G10915.2p  transcript_id AT3G10915.2  protein_id AT3G10915.2p  transcript_id AT3G10915.2  
At3g10915	chr3:003417377	0.0	C/3417377-3417497,3416856-3417036,3416618-3416759,3416445-3416517,3416101-3416267	AT3G10915.4  CDS  go_component endoplasmic reticulum|GO:0005783||IEA  go_component endoplasmic reticulum|GO:0005783||ISS  go_process biological_process|GO:0008150||ND  product reticulon family protein  note reticulon family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: reticulon family protein (RTNLB3) (TAIR:AT1G64090.1); Has 458 Blast hits to 458 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 188; Fungi - 2; Plants - 268; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G10915.4p  transcript_id AT3G10915.4  protein_id AT3G10915.4p  transcript_id AT3G10915.4  
At3g10920	chr3:003418015	0.0	W/3418015-3418309,3418788-3418834,3418915-3419037,3419152-3419208,3419328-3419405,3419489-3419581	AT3G10920.2  CDS  gene_syn MANGANESE SUPEROXIDE DISMUTASE 1, MEE33, MSD1, maternal effect embryo arrest 33  gene MSD1  function manganese superoxide dismutase (MSD1)  go_process response to salt stress|GO:0009651|17916636|IEP  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_function metal ion binding|GO:0046872|12606038|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|12606038|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|9765550|NAS  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process removal of superoxide radicals|GO:0019430|9765550|IC  go_function superoxide dismutase activity|GO:0004784|9765550|IDA  product MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1); metal ion binding / superoxide dismutase  note MANGANESE SUPEROXIDE DISMUTASE 1 (MSD1); FUNCTIONS IN: superoxide dismutase activity, metal ion binding; INVOLVED IN: embryonic development ending in seed dormancy, response to salt stress, defense response to bacterium, removal of superoxide radicals; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Manganese and iron superoxide dismutase (InterPro:IPR001189); BEST Arabidopsis thaliana protein match is: superoxide dismutase (Mn), putative / manganese superoxide dismutase, putative (TAIR:AT3G56350.1); Has 7804 Blast hits to 7804 proteins in 2186 species: Archae - 145; Bacteria - 5061; Metazoa - 359; Fungi - 541; Plants - 254; Viruses - 1; Other Eukaryotes - 1443 (source: NCBI BLink).  protein_id AT3G10920.2p  transcript_id AT3G10920.2  protein_id AT3G10920.2p  transcript_id AT3G10920.2  
At3g10920	chr3:003418015	0.0	W/3418015-3418309,3418788-3418834,3418915-3419040,3419152-3419208,3419328-3419405,3419489-3419581	AT3G10920.1  CDS  gene_syn MANGANESE SUPEROXIDE DISMUTASE 1, MEE33, MSD1, maternal effect embryo arrest 33  gene MSD1  function manganese superoxide dismutase (MSD1)  go_process response to salt stress|GO:0009651|17916636|IEP  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_function metal ion binding|GO:0046872|12606038|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|12606038|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|9765550|NAS  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process removal of superoxide radicals|GO:0019430|9765550|IC  go_function superoxide dismutase activity|GO:0004784|9765550|IDA  product MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1); metal ion binding / superoxide dismutase  note MANGANESE SUPEROXIDE DISMUTASE 1 (MSD1); FUNCTIONS IN: superoxide dismutase activity, metal ion binding; INVOLVED IN: embryonic development ending in seed dormancy, response to salt stress, defense response to bacterium, removal of superoxide radicals; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Manganese and iron superoxide dismutase (InterPro:IPR001189); BEST Arabidopsis thaliana protein match is: superoxide dismutase (Mn), putative / manganese superoxide dismutase, putative (TAIR:AT3G56350.1); Has 7840 Blast hits to 7839 proteins in 2193 species: Archae - 145; Bacteria - 5073; Metazoa - 360; Fungi - 544; Plants - 255; Viruses - 1; Other Eukaryotes - 1462 (source: NCBI BLink).  protein_id AT3G10920.1p  transcript_id AT3G10920.1  protein_id AT3G10920.1p  transcript_id AT3G10920.1  
At3g10930	chr3:003420228	0.0	C/3420228-3420533	AT3G10930.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G10930.1p  transcript_id AT3G10930.1  protein_id AT3G10930.1p  transcript_id AT3G10930.1  
At3g10940	chr3:003423127	0.0	C/3423127-3423394,3422804-3423009,3422543-3422713,3422259-3422462	AT3G10940.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_process dephosphorylation|GO:0016311||IEA  go_function protein tyrosine/serine/threonine phosphatase activity|GO:0008138||IEA  go_function phosphatase activity|GO:0016791||IEA  product protein phosphatase-related  note protein phosphatase-related; FUNCTIONS IN: phosphatase activity, protein tyrosine/serine/threonine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation, dephosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase (InterPro:IPR000387), Protein-tyrosine phosphatase, dual specificity (InterPro:IPR000340); BEST Arabidopsis thaliana protein match is: SEX4 (STARCH-EXCESS 4); polysaccharide binding / protein tyrosine/serine/threonine phosphatase (TAIR:AT3G52180.2); Has 743 Blast hits to 742 proteins in 92 species: Archae - 5; Bacteria - 8; Metazoa - 545; Fungi - 12; Plants - 77; Viruses - 11; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT3G10940.1p  transcript_id AT3G10940.1  protein_id AT3G10940.1p  transcript_id AT3G10940.1  
At3g10950	chr3:003423893	0.0	W/3423893-3423895,3423979-3424018,3424216-3424304,3424420-3424566	AT3G10950.1  CDS  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L37a (RPL37aB)  note 60S ribosomal protein L37a (RPL37aB); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, ribosome; CONTAINS InterPro DOMAIN/s: Ribosomal protein, zinc-binding (InterPro:IPR011332), Ribosomal protein L37ae (InterPro:IPR002674), Ribosomal protein L37ae/L37e, core (InterPro:IPR011331); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L37a (RPL37aC) (TAIR:AT3G60245.1); Has 758 Blast hits to 758 proteins in 271 species: Archae - 198; Bacteria - 0; Metazoa - 221; Fungi - 90; Plants - 82; Viruses - 0; Other Eukaryotes - 167 (source: NCBI BLink).  protein_id AT3G10950.1p  transcript_id AT3G10950.1  protein_id AT3G10950.1p  transcript_id AT3G10950.1  
At3g10960	chr3:003424986	0.0	C/3424986-3426725	AT3G10960.1  CDS  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||IEA  go_component membrane|GO:0016020||ISS  go_function transmembrane transporter activity|GO:0022857||ISS  product xanthine/uracil permease family protein  note xanthine/uracil permease family protein; FUNCTIONS IN: transmembrane transporter activity, transporter activity; INVOLVED IN: transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: xanthine/uracil/vitamin C permease family protein (TAIR:AT5G50300.1); Has 4931 Blast hits to 4928 proteins in 986 species: Archae - 54; Bacteria - 3052; Metazoa - 8; Fungi - 78; Plants - 33; Viruses - 0; Other Eukaryotes - 1706 (source: NCBI BLink).  protein_id AT3G10960.1p  transcript_id AT3G10960.1  protein_id AT3G10960.1p  transcript_id AT3G10960.1  
At3g10970	chr3:003435976	0.0	C/3435976-3436077,3435756-3435878,3435603-3435671,3435376-3435480,3434921-3434975,3434373-3434446,3434086-3434169,3433857-3434001,3433710-3433771,3433523-3433632,3433276-3433444	AT3G10970.2  CDS  go_component chloroplast|GO:0009507||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity|GO:0016787||ISS  product haloacid dehalogenase-like hydrolase family protein  note haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: haloacid dehalogenase-like hydrolase family protein (TAIR:AT4G11570.2); Has 2109 Blast hits to 2109 proteins in 681 species: Archae - 18; Bacteria - 1809; Metazoa - 9; Fungi - 4; Plants - 90; Viruses - 0; Other Eukaryotes - 179 (source: NCBI BLink).  protein_id AT3G10970.2p  transcript_id AT3G10970.2  protein_id AT3G10970.2p  transcript_id AT3G10970.2  
At3g10970	chr3:003435976	0.0	C/3435976-3436077,3435756-3435878,3435603-3435671,3435376-3435480,3434921-3434975,3434373-3434446,3434086-3434169,3433861-3434001,3433710-3433775,3433523-3433632,3433276-3433444	AT3G10970.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity|GO:0016787||ISS  product haloacid dehalogenase-like hydrolase family protein  note haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: haloacid dehalogenase-like hydrolase family protein (TAIR:AT4G11570.2); Has 2146 Blast hits to 2146 proteins in 695 species: Archae - 20; Bacteria - 1836; Metazoa - 9; Fungi - 4; Plants - 93; Viruses - 0; Other Eukaryotes - 184 (source: NCBI BLink).  protein_id AT3G10970.1p  transcript_id AT3G10970.1  protein_id AT3G10970.1p  transcript_id AT3G10970.1  
At3g10970	chr3:003435976	0.0	C/3435976-3436077,3435756-3435878,3435603-3435671,3435379-3435480,3434921-3434975,3434373-3434446,3434086-3434169,3433861-3434001,3433710-3433775,3433523-3433632,3433276-3433444	AT3G10970.3  CDS  go_component chloroplast|GO:0009507||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity|GO:0016787||ISS  product haloacid dehalogenase-like hydrolase family protein  note haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: haloacid dehalogenase-like hydrolase family protein (TAIR:AT4G11570.2); Has 1718 Blast hits to 1718 proteins in 592 species: Archae - 10; Bacteria - 1487; Metazoa - 2; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).  protein_id AT3G10970.3p  transcript_id AT3G10970.3  protein_id AT3G10970.3p  transcript_id AT3G10970.3  
At3g10974	chr3:003437188	0.0	W/3437188-3437313	AT3G10974.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G10974.1p  transcript_id AT3G10974.1  protein_id AT3G10974.1p  transcript_id AT3G10974.1  
At3g10980	chr3:003438810	0.0	W/3438810-3440501	AT3G10980.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, cultured cell; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05350.1); Has 90 Blast hits to 84 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 5; Plants - 83; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G10980.1p  transcript_id AT3G10980.1  protein_id AT3G10980.1p  transcript_id AT3G10980.1  
At3g10985	chr3:003442776	0.0	W/3442776-3443108	AT3G10985.1  CDS  gene_syn ARABIDOPSIS THALIANA WOUND-INDUCED PROTEIN 12, ATWI-12, SAG20, SENESCENCE ASSOCIATED GENE 20, WI12, WOUND-INDUCED PROTEIN 12  gene SAG20  function A senescence-associated gene whose expression is induced in response to treatment with Nep1, a fungal protein that causes necrosis.  go_component cellular_component|GO:0005575||ND  go_process response to stress|GO:0006950|9617813|IEP  go_process aging|GO:0007568|10444084|IEP  go_process response to fungus|GO:0009620|12857840|IEP  go_function molecular_function|GO:0003674||ND  product SAG20 (SENESCENCE ASSOCIATED GENE 20)  note SENESCENCE ASSOCIATED GENE 20 (SAG20); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging, response to fungus, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Wound-induced protein, Wun1, subgroup (InterPro:IPR016533), Wound-induced protein, Wun1 (InterPro:IPR009798); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01740.1); Has 47 Blast hits to 47 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G10985.1p  transcript_id AT3G10985.1  protein_id AT3G10985.1p  transcript_id AT3G10985.1  
At3g10986	chr3:003445460	0.0	C/3445460-3445672,3444543-3444788,3444203-3444337	AT3G10986.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56180.1); Has 96 Blast hits to 96 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G10986.1p  transcript_id AT3G10986.1  protein_id AT3G10986.1p  transcript_id AT3G10986.1  
At3g10990	chr3:003446462	0.0	C/3446462-3446995	AT3G10990.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G23960.1); Has 292 Blast hits to 286 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 292; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G10990.1p  transcript_id AT3G10990.1  protein_id AT3G10990.1p  transcript_id AT3G10990.1  
At3g11000	chr3:003447847	0.0	W/3447847-3447944,3448021-3448099,3448185-3448359,3448437-3448538,3448619-3448800,3448895-3449950,3450047-3450124,3450230-3450283	AT3G11000.2  CDS  product unknown protein  note EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Development and cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01660.1).  protein_id AT3G11000.2p  transcript_id AT3G11000.2  protein_id AT3G11000.2p  transcript_id AT3G11000.2  
At3g11000	chr3:003448442	0.0	W/3448442-3448538,3448619-3448800,3448895-3449950,3450047-3450124,3450230-3450283	AT3G11000.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Development and cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01660.1); Has 173 Blast hits to 164 proteins in 29 species: Archae - 0; Bacteria - 6; Metazoa - 2; Fungi - 4; Plants - 153; Viruses - 1; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT3G11000.1p  transcript_id AT3G11000.1  protein_id AT3G11000.1p  transcript_id AT3G11000.1  
At3g11010	chr3:003450988	0.0	C/3450988-3453672	AT3G11010.1  CDS  gene_syn AtRLP34, Receptor Like Protein 34  gene AtRLP34  go_component cellular_component|GO:0005575||ND  go_process defense response|GO:0006952||ISS  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  go_function kinase activity|GO:0016301||ISS  product AtRLP34 (Receptor Like Protein 34); kinase/ protein binding  note Receptor Like Protein 34 (AtRLP34); FUNCTIONS IN: protein binding, kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210); BEST Arabidopsis thaliana protein match is: AtRLP53 (Receptor Like Protein 53); kinase/ protein binding (TAIR:AT5G27060.1); Has 91497 Blast hits to 22730 proteins in 876 species: Archae - 60; Bacteria - 6628; Metazoa - 30049; Fungi - 1113; Plants - 46480; Viruses - 34; Other Eukaryotes - 7133 (source: NCBI BLink).  protein_id AT3G11010.1p  transcript_id AT3G11010.1  protein_id AT3G11010.1p  transcript_id AT3G11010.1  
At3g11020	chr3:003456009	0.0	W/3456009-3457001	AT3G11020.1  CDS  gene_syn DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DRE/CRT-BINDING PROTEIN 2B, DREB2, DREB2B  gene DREB2B  function encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family (DREB2B). The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to water deprivation|GO:0009414|10809011|IEP  go_process response to water deprivation|GO:0009414|10809011|TAS  go_process response to salt stress|GO:0009651|10809011|IEP  go_process heat acclimation|GO:0010286|16807682|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function transcription activator activity|GO:0016563|9707537|TAS  product DREB2B (DRE/CRT-BINDING PROTEIN 2B); DNA binding / transcription activator/ transcription factor  note DRE/CRT-BINDING PROTEIN 2B (DREB2B); FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: response to salt stress, response to water deprivation, heat acclimation, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: DREB2A; DNA binding / transcription activator/ transcription factor (TAIR:AT5G05410.1); Has 3528 Blast hits to 3516 proteins in 210 species: Archae - 0; Bacteria - 8; Metazoa - 17; Fungi - 6; Plants - 3394; Viruses - 2; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT3G11020.1p  transcript_id AT3G11020.1  protein_id AT3G11020.1p  transcript_id AT3G11020.1  
At3g11030	chr3:003458819	0.0	C/3458819-3459300,3458557-3458728,3458184-3458383,3457907-3458065,3457300-3457642	AT3G11030.1  CDS  product unknown protein  note unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40320.1); Has 38137 Blast hits to 13125 proteins in 734 species: Archae - 57; Bacteria - 4320; Metazoa - 12701; Fungi - 2943; Plants - 10316; Viruses - 2004; Other Eukaryotes - 5796 (source: NCBI BLink).  protein_id AT3G11030.1p  transcript_id AT3G11030.1  protein_id AT3G11030.1p  transcript_id AT3G11030.1  
At3g11040	chr3:003460143	0.0	W/3460143-3460535,3460724-3460861,3460956-3461065,3461132-3461243,3461329-3461436,3461542-3461654,3461799-3461880,3462003-3462083,3462222-3462274,3462320-3462521,3462599-3463312	AT3G11040.1  CDS  go_component cytoplasm|GO:0005737||IEA  go_function mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity|GO:0033925||IEA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product glycosyl hydrolase family 85 protein  note glycosyl hydrolase family 85 protein; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 85 (InterPro:IPR005201), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: hydrolase, acting on glycosyl bonds / mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase (TAIR:AT5G05460.1); Has 293 Blast hits to 286 proteins in 127 species: Archae - 0; Bacteria - 120; Metazoa - 98; Fungi - 23; Plants - 24; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT3G11040.1p  transcript_id AT3G11040.1  protein_id AT3G11040.1p  transcript_id AT3G11040.1  
At3g11050	chr3:003463651	0.0	W/3463651-3463943,3464226-3464309,3464407-3464467,3464540-3464627,3464763-3464824,3464952-3465017,3465091-3465154,3465251-3465294	AT3G11050.1  CDS  gene_syn ATFER2, ferritin 2  gene ATFER2  go_function binding|GO:0005488||IEA  go_function ferric iron binding|GO:0008199||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function transition metal ion binding|GO:0046914||IEA  go_component chloroplast|GO:0009507|11672431|ISS  go_process iron ion transport|GO:0006826||ISS  go_process cellular iron ion homeostasis|GO:0006879||ISS  go_process response to oxidative stress|GO:0006979|18826427|IMP  go_process response to abscisic acid stimulus|GO:0009737|11672431|IEP  go_function ferric iron binding|GO:0008199||ISS  product ATFER2 (ferritin 2); binding / ferric iron binding / oxidoreductase/ transition metal ion binding  note ferritin 2 (ATFER2); FUNCTIONS IN: oxidoreductase activity, ferric iron binding, binding, transition metal ion binding; INVOLVED IN: response to oxidative stress, cellular iron ion homeostasis, response to abscisic acid stimulus, iron ion transport; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Ferritin, N-terminal (InterPro:IPR001519), Ferritin-related (InterPro:IPR012347), Ferritin-like (InterPro:IPR009040), Ferritin, conserved site (InterPro:IPR014034), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078), Ferritin and Dps (InterPro:IPR008331); BEST Arabidopsis thaliana protein match is: ATFER4 (ferritin 4); binding / ferric iron binding / oxidoreductase/ transition metal ion binding (TAIR:AT2G40300.1); Has 2388 Blast hits to 2383 proteins in 603 species: Archae - 119; Bacteria - 761; Metazoa - 1101; Fungi - 6; Plants - 217; Viruses - 0; Other Eukaryotes - 184 (source: NCBI BLink).  protein_id AT3G11050.1p  transcript_id AT3G11050.1  protein_id AT3G11050.1p  transcript_id AT3G11050.1  
At3g11060	chr3:003466303	0.0	C/3466303-3466944	AT3G11060.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G06545.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G11060.1p  transcript_id AT3G11060.1  protein_id AT3G11060.1p  transcript_id AT3G11060.1  
At3g11070	chr3:003467801	0.0	W/3467801-3468310,3468444-3468929,3469148-3469630,3469732-3469815	AT3G11070.1  CDS  gene_syn F11B9.3  go_component outer membrane|GO:0019867||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product outer membrane OMP85 family protein  note outer membrane OMP85 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: outer membrane; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: Bacterial surface antigen (D15) (InterPro:IPR000184), Surface antigen variable number (InterPro:IPR010827); BEST Arabidopsis thaliana protein match is: outer membrane OMP85 family protein (TAIR:AT5G05520.1); Has 1201 Blast hits to 1199 proteins in 376 species: Archae - 0; Bacteria - 505; Metazoa - 124; Fungi - 83; Plants - 38; Viruses - 0; Other Eukaryotes - 451 (source: NCBI BLink).  protein_id AT3G11070.1p  transcript_id AT3G11070.1  protein_id AT3G11070.1p  transcript_id AT3G11070.1  
At3g11080	chr3:003470481	0.0	W/3470481-3473312	AT3G11080.1  CDS  gene_syn AtRLP35, F11B9.4, Receptor Like Protein 35  gene AtRLP35  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  go_function kinase activity|GO:0016301||ISS  product AtRLP35 (Receptor Like Protein 35); kinase/ protein binding  note Receptor Like Protein 35 (AtRLP35); FUNCTIONS IN: protein binding, kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP53 (Receptor Like Protein 53); kinase/ protein binding (TAIR:AT5G27060.1); Has 91967 Blast hits to 23913 proteins in 899 species: Archae - 48; Bacteria - 6947; Metazoa - 31744; Fungi - 1038; Plants - 45257; Viruses - 21; Other Eukaryotes - 6912 (source: NCBI BLink).  protein_id AT3G11080.1p  transcript_id AT3G11080.1  protein_id AT3G11080.1p  transcript_id AT3G11080.1  
At3g11090	chr3:003475036	0.0	W/3475036-3475533	AT3G11090.1  CDS  gene_syn F11B9.5, LBD21, LOB DOMAIN-CONTAINING PROTEIN 21  gene LBD21  go_process biological_process|GO:0008150||ND  product LBD21 (LOB DOMAIN-CONTAINING PROTEIN 21)  note LOB DOMAIN-CONTAINING PROTEIN 21 (LBD21); INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD25 (LOB DOMAIN-CONTAINING PROTEIN 25) (TAIR:AT3G27650.1); Has 584 Blast hits to 581 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 584; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G11090.1p  transcript_id AT3G11090.1  protein_id AT3G11090.1p  transcript_id AT3G11090.1  
At3g11100	chr3:003476585	0.0	C/3476585-3477320,3476490-3476503	AT3G11100.1  CDS  go_component nucleus|GO:0005634|14617066|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: MADF domain (InterPro:IPR006578); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT5G05550.1); Has 522 Blast hits to 488 proteins in 92 species: Archae - 2; Bacteria - 29; Metazoa - 76; Fungi - 65; Plants - 221; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).  protein_id AT3G11100.1p  transcript_id AT3G11100.1  protein_id AT3G11100.1p  transcript_id AT3G11100.1  
At3g11110	chr3:003479979	0.0	W/3479979-3480455	AT3G11110.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: stem, leaf whorl, cotyledon, stamen, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G30400.1); Has 6196 Blast hits to 6175 proteins in 219 species: Archae - 0; Bacteria - 0; Metazoa - 1979; Fungi - 434; Plants - 2708; Viruses - 52; Other Eukaryotes - 1023 (source: NCBI BLink).  protein_id AT3G11110.1p  transcript_id AT3G11110.1  protein_id AT3G11110.1p  transcript_id AT3G11110.1  
At3g11120	chr3:003481128	0.0	W/3481128-3481139,3481239-3481304	AT3G11120.1  CDS  gene_syn F11B9.31  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L41 (RPL41E)  note 60S ribosomal protein L41 (RPL41E); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, ribosome; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein L41 (InterPro:IPR007836); Has 170 Blast hits to 170 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 77; Fungi - 35; Plants - 49; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G11120.1p  transcript_id AT3G11120.1  protein_id AT3G11120.1p  transcript_id AT3G11120.1  
At3g11130	chr3:003491623	0.0	C/3491623-3491667,3491083-3491287,3490455-3490543,3490276-3490354,3490070-3490197,3489872-3489970,3489681-3489789,3489515-3489594,3489202-3489429,3489050-3489115,3488333-3488449,3488028-3488225,3487827-3487943,3487668-3487727,3487379-3487465,3487196-3487279,3486975-3487109,3486823-3486885,3486638-3486742,3486453-3486565,3486104-3486356,3485890-3486026,3485527-3485805,3484437-3485439,3483847-3484332,3483577-3483747,3483307-3483492,3483041-3483163,3482827-3482937,3482575-3482736	AT3G11130.1  CDS  gene_syn F11B9.30  go_component vacuole|GO:0005773|14760709|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function structural molecule activity|GO:0005198||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function structural molecule activity|GO:0005198||ISS  product clathrin heavy chain, putative  note clathrin heavy chain, putative; FUNCTIONS IN: protein binding, structural molecule activity, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: male gametophyte, guard cell, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Clathrin, heavy chain (InterPro:IPR016341), Clathrin, heavy chain, linker and propeller (InterPro:IPR016025), Tetratricopeptide-like helical (InterPro:IPR011990), Clathrin, heavy chain, propeller, N-terminal (InterPro:IPR001473), Clathrin, heavy chain, linker, core motif (InterPro:IPR015348), Armadillo-type fold (InterPro:IPR016024), Clathrin, heavy chain/VPS, 7-fold repeat (InterPro:IPR000547); BEST Arabidopsis thaliana protein match is: clathrin heavy chain, putative (TAIR:AT3G08530.1); Has 1310 Blast hits to 1193 proteins in 365 species: Archae - 0; Bacteria - 34; Metazoa - 776; Fungi - 123; Plants - 60; Viruses - 0; Other Eukaryotes - 317 (source: NCBI BLink).  protein_id AT3G11130.1p  transcript_id AT3G11130.1  protein_id AT3G11130.1p  transcript_id AT3G11130.1  
At3g11150	chr3:003493814	0.0	C/3493814-3494599,3492986-3493315	AT3G11150.1  CDS  gene_syn F11B9.8  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 262 Blast hits to 262 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 262; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G11150.1p  transcript_id AT3G11150.1  protein_id AT3G11150.1p  transcript_id AT3G11150.1  
At3g11160	chr3:003497019	0.0	C/3497019-3497057,3496901-3496934,3496740-3496799,3496581-3496633,3496237-3496488	AT3G11160.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte; EXPRESSED DURING: M germinated pollen stage; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G11160.1p  transcript_id AT3G11160.1  protein_id AT3G11160.1p  transcript_id AT3G11160.1  
At3g11165	chr3:003499052	0.0	C/3499052-3499090,3498764-3498869,3498433-3498528,3498264-3498331,3498166-3498182,3497946-3498075	AT3G11165.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT3G11165.1p  transcript_id AT3G11165.1  protein_id AT3G11165.1p  transcript_id AT3G11165.1  
At3g11170	chr3:003499959	0.0	W/3499959-3500452,3500753-3500842,3500924-3500990,3501081-3501173,3501253-3501438,3501532-3501612,3501716-3501853,3501935-3502126	AT3G11170.1  CDS  gene_syn FAD7, FADD, FATTY ACID DESATURASE 7, FATTY ACID DESATURASE D, OMEGA-3 FATTY ACID DESATURASE, CHLOROPLAST PRECURSOR  gene FAD7  function Chloroplastic enzyme responsible for the synthesis of 16:3 and 18:3 fatty acids from galactolipids, sulpholipids and phosphatidylglycerol. Uses ferredoxin as electron donor. Gene expression is induced by wounding in shoot and root. The wound-response in shoot is independent of jasmonic acid mediated pathway whereas the root response is mediated by jasmonic acid.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast|GO:0009507|8226956|ISS  go_component chloroplast|GO:0009507|8754681|NAS  go_component plastid membrane|GO:0042170|9368411|TAS  go_process fatty acid biosynthetic process|GO:0006633|8226956|IMP  go_process response to cold|GO:0009409|12232227|IMP  go_process response to wounding|GO:0009611|9368411|IEP  go_process jasmonic acid mediated signaling pathway|GO:0009867|9368411|IEP  go_function omega-3 fatty acid desaturase activity|GO:0042389|8226956|IGI  product FAD7 (FATTY ACID DESATURASE 7); omega-3 fatty acid desaturase  note FATTY ACID DESATURASE 7 (FAD7); FUNCTIONS IN: omega-3 fatty acid desaturase activity; INVOLVED IN: response to cold, response to wounding, jasmonic acid mediated signaling pathway, fatty acid biosynthetic process; LOCATED IN: plastid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: FAD8 (FATTY ACID DESATURASE 8); omega-3 fatty acid desaturase (TAIR:AT5G05580.1); Has 2121 Blast hits to 2121 proteins in 481 species: Archae - 0; Bacteria - 748; Metazoa - 15; Fungi - 174; Plants - 714; Viruses - 0; Other Eukaryotes - 470 (source: NCBI BLink).  protein_id AT3G11170.1p  transcript_id AT3G11170.1  protein_id AT3G11170.1p  transcript_id AT3G11170.1  
At3g11180	chr3:003504249	0.0	W/3504249-3504623,3504769-3505016,3505586-3505916,3506440-3506688	AT3G11180.1  CDS  gene_syn F11B9.11  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, iron ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT5G05600.1); Has 6038 Blast hits to 6014 proteins in 688 species: Archae - 0; Bacteria - 730; Metazoa - 121; Fungi - 649; Plants - 3100; Viruses - 0; Other Eukaryotes - 1438 (source: NCBI BLink).  protein_id AT3G11180.1p  transcript_id AT3G11180.1  protein_id AT3G11180.1p  transcript_id AT3G11180.1  
At3g11200	chr3:003509879	0.0	C/3509879-3510195,3508727-3508850,3508387-3508647	AT3G11200.2  CDS  gene_syn AL2, ALFIN-LIKE 2, F11B9.12  gene AL2  function AL2 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.  go_component nucleus|GO:0005634|19154204|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function methylated histone residue binding|GO:0035064|19154204|ISS  product AL2 (ALFIN-LIKE 2); DNA binding / methylated histone residue binding  note ALFIN-LIKE 2 (AL2); FUNCTIONS IN: methylated histone residue binding, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: AL1 (ALFIN-LIKE 1); DNA binding / methylated histone residue binding (TAIR:AT5G05610.2); Has 1148 Blast hits to 1112 proteins in 129 species: Archae - 0; Bacteria - 0; Metazoa - 653; Fungi - 155; Plants - 287; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT3G11200.2p  transcript_id AT3G11200.2  protein_id AT3G11200.2p  transcript_id AT3G11200.2  
At3g11200	chr3:003510319	0.0	C/3510319-3510418,3510185-3510217,3509879-3510101,3508727-3508850,3508387-3508647	AT3G11200.1  CDS  gene_syn AL2, ALFIN-LIKE 2, F11B9.12  gene AL2  function AL2 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.  go_component nucleus|GO:0005634|19154204|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function methylated histone residue binding|GO:0035064|19154204|ISS  product AL2 (ALFIN-LIKE 2); DNA binding / methylated histone residue binding  note ALFIN-LIKE 2 (AL2); FUNCTIONS IN: methylated histone residue binding, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: AL1 (ALFIN-LIKE 1); DNA binding / methylated histone residue binding (TAIR:AT5G05610.2); Has 1149 Blast hits to 1113 proteins in 129 species: Archae - 0; Bacteria - 0; Metazoa - 653; Fungi - 155; Plants - 288; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT3G11200.1p  transcript_id AT3G11200.1  protein_id AT3G11200.1p  transcript_id AT3G11200.1  
At3g11210	chr3:003512789	0.0	C/3512789-3512899,3512472-3512549,3511880-3512020,3511700-3511776,3511459-3511608,3511101-3511314	AT3G11210.1  CDS  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity|GO:0016787||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_component cellular_component|GO:0005575||ND  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Esterase, SGNH hydrolase-type, subgroup (InterPro:IPR013831), Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT2G38180.1); Has 410 Blast hits to 409 proteins in 144 species: Archae - 0; Bacteria - 124; Metazoa - 65; Fungi - 98; Plants - 78; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT3G11210.1p  transcript_id AT3G11210.1  protein_id AT3G11210.1p  transcript_id AT3G11210.1  
At3g11220	chr3:003515855	0.0	C/3515855-3515990,3515533-3515759,3515379-3515442,3515113-3515260,3514774-3514852,3514448-3514607,3514276-3514367,3513830-3513991	AT3G11220.1  CDS  gene_syn ELO1, ELONGATA 1  gene ELO1  function A subunit of Elongator, a histone acetyl transferase complex, consisting of six subunits (ELP1 ELP6), that copurifies with the elongating RNAPII in yeast and humans. Three Arabidopsis thaliana genes, encoding homologs of the yeast Elongator subunits ELP1, ELP3 (histone acetyl transferase), and ELP4 are responsible for the narrow leaf phenotype in elongata mutants and for reduced root growth that results from a decreased cell division rate.  go_component Elongator holoenzyme complex|GO:0033588||IEA  go_process cell proliferation|GO:0008283|15894610|IMP  go_process organ growth|GO:0035265|15894610|IMP  go_function molecular_function|GO:0003674||ND  product Paxneb protein-related  note ELONGATA 1 (ELO1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell proliferation, organ growth; LOCATED IN: Elongator holoenzyme complex; CONTAINS InterPro DOMAIN/s: Elongator complex protein 4 (InterPro:IPR008728); Has 233 Blast hits to 211 proteins in 97 species: Archae - 2; Bacteria - 0; Metazoa - 132; Fungi - 57; Plants - 28; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT3G11220.1p  transcript_id AT3G11220.1  protein_id AT3G11220.1p  transcript_id AT3G11220.1  
At3g11220	chr3:003515855	0.0	C/3515855-3515990,3515533-3515759,3515379-3515442,3515113-3515260,3514976-3515029,3514774-3514852,3514448-3514607,3514276-3514367,3513830-3513991	AT3G11220.2  CDS  gene_syn ELO1, ELONGATA 1  gene ELO1  function A subunit of Elongator, a histone acetyl transferase complex, consisting of six subunits (ELP1 ELP6), that copurifies with the elongating RNAPII in yeast and humans. Three Arabidopsis thaliana genes, encoding homologs of the yeast Elongator subunits ELP1, ELP3 (histone acetyl transferase), and ELP4 are responsible for the narrow leaf phenotype in elongata mutants and for reduced root growth that results from a decreased cell division rate.  go_component Elongator holoenzyme complex|GO:0033588||IEA  go_process cell proliferation|GO:0008283|15894610|IMP  go_process organ growth|GO:0035265|15894610|IMP  go_function molecular_function|GO:0003674||ND  product Paxneb protein-related  note ELONGATA 1 (ELO1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell proliferation, organ growth; LOCATED IN: Elongator holoenzyme complex; CONTAINS InterPro DOMAIN/s: Elongator complex protein 4 (InterPro:IPR008728).  protein_id AT3G11220.2p  transcript_id AT3G11220.2  protein_id AT3G11220.2p  transcript_id AT3G11220.2  
At3g11230	chr3:003516683	0.0	W/3516683-3516877,3517591-3517634,3517759-3517867,3517968-3518023,3518109-3518193	AT3G11230.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product yippee family protein  note yippee family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Yippee-like protein (InterPro:IPR004910); BEST Arabidopsis thaliana protein match is: yippee family protein (TAIR:AT2G40110.1); Has 693 Blast hits to 693 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 400; Fungi - 131; Plants - 110; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT3G11230.2p  transcript_id AT3G11230.2  protein_id AT3G11230.2p  transcript_id AT3G11230.2  
At3g11230	chr3:003516782	0.0	W/3516782-3516877,3517591-3517634,3517759-3517867,3517968-3518023,3518109-3518193	AT3G11230.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product yippee family protein  note yippee family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Yippee-like protein (InterPro:IPR004910); BEST Arabidopsis thaliana protein match is: yippee family protein (TAIR:AT2G40110.1); Has 693 Blast hits to 693 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 400; Fungi - 131; Plants - 110; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT3G11230.1p  transcript_id AT3G11230.1  protein_id AT3G11230.1p  transcript_id AT3G11230.1  
At3g11240	chr3:003520948	0.0	C/3520948-3521092,3520770-3520808,3520446-3520596,3519240-3520319,3518868-3519153,3518665-3518781	AT3G11240.1  CDS  gene_syn ARGININE-TRNA PROTEIN TRANSFERASE 2, ATE2  gene ATE2  function Encodes an arginyl-tRNA:protein arginyltransferase (ATE2), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6). PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination.  go_function arginyltransferase activity|GO:0004057||IEA  go_component cellular_component|GO:0005575||ND  go_process response to abscisic acid stimulus|GO:0009737|19255443|IGI  go_process regulation of seed germination|GO:0010029|19255443|IGI  go_process protein arginylation|GO:0016598||ISS  go_process regulation of lipid catabolic process|GO:0050994|19255443|IGI  go_function arginyltransferase activity|GO:0004057||ISS  product ATE2 (ARGININE-TRNA PROTEIN TRANSFERASE 2); arginyltransferase  note ARGININE-TRNA PROTEIN TRANSFERASE 2 (ATE2); FUNCTIONS IN: arginyltransferase activity; INVOLVED IN: regulation of lipid catabolic process, regulation of seed germination, protein arginylation, response to abscisic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Arginine-tRNA-protein transferase, N-terminal (InterPro:IPR007471), Arginine-tRNA-protein transferase 1, eukaryotic (InterPro:IPR017137), Arginine-tRNA-protein transferase, C-terminal (InterPro:IPR007472); BEST Arabidopsis thaliana protein match is: ATE1 (ARGININE-TRNA PROTEIN TRANSFERASE 1); arginyltransferase (TAIR:AT5G05700.1); Has 1628 Blast hits to 1473 proteins in 531 species: Archae - 0; Bacteria - 929; Metazoa - 195; Fungi - 162; Plants - 23; Viruses - 0; Other Eukaryotes - 319 (source: NCBI BLink).  protein_id AT3G11240.1p  transcript_id AT3G11240.1  protein_id AT3G11240.1p  transcript_id AT3G11240.1  
At3g11250	chr3:003521453	0.0	W/3521453-3521707,3521801-3521869,3521983-3522081,3522179-3522571,3522671-3522826	AT3G11250.1  CDS  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic ribosome|GO:0022626|17934214|IDA  go_process translation|GO:0006412||ISS  go_process translational elongation|GO:0006414||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S acidic ribosomal protein P0 (RPP0C)  note 60S acidic ribosomal protein P0 (RPP0C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, response to salt stress, translation; LOCATED IN: cytosolic ribosome, ribosome, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813), Ribosomal protein L10 (InterPro:IPR001790); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P0 (RPP0B) (TAIR:AT3G09200.1); Has 1503 Blast hits to 1500 proteins in 380 species: Archae - 223; Bacteria - 1; Metazoa - 578; Fungi - 277; Plants - 141; Viruses - 0; Other Eukaryotes - 283 (source: NCBI BLink).  protein_id AT3G11250.1p  transcript_id AT3G11250.1  protein_id AT3G11250.1p  transcript_id AT3G11250.1  
At3g11260	chr3:003527606	0.0	W/3527606-3527909,3528019-3528263	AT3G11260.1  CDS  gene_syn WOX5, WUSCHEL RELATED HOMEOBOX 5  gene WOX5  function Arabidopsis thaliana WOX5 protein mRNA  go_component nucleus|GO:0005634||IEA  go_process response to auxin stimulus|GO:0009733|16262712|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  product WOX5 (WUSCHEL RELATED HOMEOBOX 5); transcription factor  note WUSCHEL RELATED HOMEOBOX 5 (WOX5); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to auxin stimulus; LOCATED IN: nucleus; EXPRESSED IN: quiescent center; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WOX7 (WUSCHEL-RELATED HOMEOBOX 7); DNA binding / transcription factor (TAIR:AT5G05770.1); Has 304 Blast hits to 304 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 304; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G11260.1p  transcript_id AT3G11260.1  protein_id AT3G11260.1p  transcript_id AT3G11260.1  
At3g11270	chr3:003528989	0.0	W/3528989-3529175,3529566-3529658,3529739-3529820,3530000-3530096,3530229-3530304,3530461-3530519,3530659-3530781,3530908-3530965,3531058-3531143,3531246-3531317	AT3G11270.1  CDS  gene_syn MEE34, maternal effect embryo arrest 34  gene MEE34  go_component nucleus|GO:0005634|11742986|TAS  go_component proteasome regulatory particle, lid subcomplex|GO:0008541||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process protein catabolic process|GO:0030163|11742986|TAS  go_function molecular_function|GO:0003674||ND  product MEE34 (maternal effect embryo arrest 34)  note maternal effect embryo arrest 34 (MEE34); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy, protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus, proteasome regulatory particle, lid subcomplex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: RPN8A (RP NON-ATPASE SUBUNIT 8A) (TAIR:AT5G05780.1); Has 981 Blast hits to 977 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 446; Fungi - 210; Plants - 166; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT3G11270.1p  transcript_id AT3G11270.1  protein_id AT3G11270.1p  transcript_id AT3G11270.1  
At3g11280	chr3:003533990	0.0	C/3533990-3534393,3533477-3533864	AT3G11280.1  CDS  gene_syn MYB-LIKE PROTEIN, TF2  function Putative transcription factors interacting with the gene product of VHA-B1 (vacuolar ATPase subunit B1; as shown through yeast two-hybrid assay).  go_component nucleus|GO:0005634|17081979|IDA  go_process response to gibberellin stimulus|GO:0009739|17933900|IEP  go_process response to salicylic acid stimulus|GO:0009751|16307367|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to gibberellin stimulus, regulation of transcription, response to salicylic acid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT5G05790.1); Has 975 Blast hits to 973 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 0; Plants - 800; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT3G11280.1p  transcript_id AT3G11280.1  protein_id AT3G11280.1p  transcript_id AT3G11280.1  
At3g11280	chr3:003533990	0.0	C/3533990-3534393,3533477-3533864	AT3G11280.2  CDS  gene_syn MYB-LIKE PROTEIN, TF2  function Putative transcription factors interacting with the gene product of VHA-B1 (vacuolar ATPase subunit B1; as shown through yeast two-hybrid assay).  go_component nucleus|GO:0005634|17081979|IDA  go_process response to gibberellin stimulus|GO:0009739|17933900|IEP  go_process response to salicylic acid stimulus|GO:0009751|16307367|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to gibberellin stimulus, regulation of transcription, response to salicylic acid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT5G05790.1); Has 975 Blast hits to 973 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 0; Plants - 800; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT3G11280.2p  transcript_id AT3G11280.2  protein_id AT3G11280.2p  transcript_id AT3G11280.2  
At3g11285	chr3:003535146	0.0	W/3535146-3535218	AT3G11285.1  tRNA  gene_syn 60755.TRNA-ARG-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: CCT)  transcript_id AT3G11285.1  
At3g11290	chr3:003537011	0.0	C/3537011-3537295,3536432-3536935,3535766-3536359	AT3G11290.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19220.1); Has 374 Blast hits to 234 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 22; Plants - 352; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G11290.1p  transcript_id AT3G11290.1  protein_id AT3G11290.1p  transcript_id AT3G11290.1  
At3g11300	chr3:003540390	0.0	C/3540390-3540473,3540185-3540301,3539871-3540048,3539589-3539675,3539347-3539507	AT3G11300.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 53 Blast hits to 53 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G11300.1p  transcript_id AT3G11300.1  protein_id AT3G11300.1p  transcript_id AT3G11300.1  
At3g11310	chr3:003544043	0.0	C/3544043-3544333,3543420-3543956,3542536-3543327	AT3G11310.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 302 Blast hits to 184 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 7; Plants - 295; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G11310.1p  transcript_id AT3G11310.1  protein_id AT3G11310.1p  transcript_id AT3G11310.1  
At3g11320	chr3:003548093	0.0	C/3548093-3548539,3547569-3547672,3547253-3547481,3547017-3547163	AT3G11320.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function organic anion transmembrane transporter activity|GO:0008514||ISS  product organic anion transmembrane transporter  note organic anion transmembrane transporter; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: phosphate translocator-related (TAIR:AT5G05820.1); Has 2042 Blast hits to 2037 proteins in 214 species: Archae - 8; Bacteria - 61; Metazoa - 646; Fungi - 307; Plants - 755; Viruses - 0; Other Eukaryotes - 265 (source: NCBI BLink).  protein_id AT3G11320.1p  transcript_id AT3G11320.1  protein_id AT3G11320.1p  transcript_id AT3G11320.1  
At3g11325	chr3:003551290	0.0	C/3551290-3551661,3550599-3550881,3549993-3550543	AT3G11325.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function acyltransferase activity|GO:0008415||IEA  product acyltransferase  note acyltransferase; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: GPAT5 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 5); 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase/ organic anion transmembrane transporter (TAIR:AT3G11430.1); Has 272 Blast hits to 172 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 271; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G11325.1p  transcript_id AT3G11325.1  protein_id AT3G11325.1p  transcript_id AT3G11325.1  
At3g11330	chr3:003553994	0.0	C/3553994-3554695,3553041-3553207,3552330-3552960	AT3G11330.1  CDS  go_function protein binding|GO:0005515||IEA  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT5G05850.1); Has 56721 Blast hits to 22652 proteins in 869 species: Archae - 19; Bacteria - 4682; Metazoa - 27023; Fungi - 1823; Plants - 19445; Viruses - 12; Other Eukaryotes - 3717 (source: NCBI BLink).  protein_id AT3G11330.1p  transcript_id AT3G11330.1  protein_id AT3G11330.1p  transcript_id AT3G11330.1  
At3g11340	chr3:003556728	0.0	W/3556728-3557193,3557272-3558149	AT3G11340.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function transferase activity, transferring hexosyl groups|GO:0016758||IEA  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT76C2; UDP-glycosyltransferase/ cis-zeatin O-beta-D-glucosyltransferase/ cytokinin 7-beta-glucosyltransferase/ cytokinin 9-beta-glucosyltransferase/ trans-zeatin O-beta-D-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT5G05860.1); Has 4679 Blast hits to 4659 proteins in 312 species: Archae - 0; Bacteria - 124; Metazoa - 1732; Fungi - 11; Plants - 2700; Viruses - 85; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT3G11340.1p  transcript_id AT3G11340.1  protein_id AT3G11340.1p  transcript_id AT3G11340.1  
At3g11350	chr3:003558495	0.0	W/3558495-3558656,3558744-3559009,3559059-3559229,3559468-3559629,3559760-3560078	AT3G11350.1  CDS  gene_syn F11B9.27  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G11380.1); Has 222 Blast hits to 181 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 222; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G11350.1p  transcript_id AT3G11350.1  protein_id AT3G11350.1p  transcript_id AT3G11350.1  
At3g11370	chr3:003561111	0.0	W/3561111-3562880	AT3G11370.1  CDS  gene_syn F11B9.29  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT3G11385.1); Has 1028 Blast hits to 460 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 6; Plants - 1015; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G11370.1p  transcript_id AT3G11370.1  protein_id AT3G11370.1p  transcript_id AT3G11370.1  
At3g11380	chr3:003564079	0.0	W/3564079-3564858,3564934-3565779	AT3G11380.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G28020.1); Has 1998 Blast hits to 1233 proteins in 44 species: Archae - 0; Bacteria - 5; Metazoa - 6; Fungi - 2; Plants - 1933; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT3G11380.1p  transcript_id AT3G11380.1  protein_id AT3G11380.1p  transcript_id AT3G11380.1  
At3g11385	chr3:003566578	0.0	W/3566578-3568878	AT3G11385.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT3G11390.1); Has 1088 Blast hits to 502 proteins in 26 species: Archae - 0; Bacteria - 28; Metazoa - 9; Fungi - 4; Plants - 1013; Viruses - 1; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT3G11385.1p  transcript_id AT3G11385.1  protein_id AT3G11385.1p  transcript_id AT3G11385.1  
At3g11390	chr3:003569828	0.0	W/3569828-3571960	AT3G11390.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT3G11385.1); Has 1784 Blast hits to 1026 proteins in 124 species: Archae - 0; Bacteria - 47; Metazoa - 231; Fungi - 104; Plants - 1241; Viruses - 38; Other Eukaryotes - 123 (source: NCBI BLink).  protein_id AT3G11390.1p  transcript_id AT3G11390.1  protein_id AT3G11390.1p  transcript_id AT3G11390.1  
At3g11402	chr3:003573516	0.0	W/3573516-3575642	AT3G11402.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT3G11390.1); Has 8960 Blast hits to 5095 proteins in 377 species: Archae - 16; Bacteria - 608; Metazoa - 3266; Fungi - 889; Plants - 2767; Viruses - 321; Other Eukaryotes - 1093 (source: NCBI BLink).  protein_id AT3G11402.1p  transcript_id AT3G11402.1  protein_id AT3G11402.1p  transcript_id AT3G11402.1  
At3g11395	chr3:003575844	0.0	W/3575844-3575917	AT3G11395.1  tRNA  gene_syn 60203.TRNA-VAL-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Val (anticodon: CAC)  transcript_id AT3G11395.1  
At3g11397	chr3:003576173	0.0	W/3576173-3576330,3576414-3576454,3576587-3576665,3577158-3577244,3577320-3577408,3577503-3577574,3577662-3577765	AT3G11397.1  CDS  gene_syn PRA1.A3, PRENYLATED RAB ACCEPTOR 1.A3  gene PRA1.A3  go_component endoplasmic reticulum|GO:0005783|18583532|IDA  go_component membrane|GO:0016020|11152613|ISS  go_process vesicle-mediated transport|GO:0016192|18583532|IDA  go_function molecular_function|GO:0003674||ND  product PRA1.A3 (PRENYLATED RAB ACCEPTOR 1.A3)  note PRENYLATED RAB ACCEPTOR 1.A3 (PRA1.A3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endoplasmic reticulum, membrane; CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: PRA1.A2 (PRENYLATED RAB ACCEPTOR 1.A2) (TAIR:AT5G05987.1); Has 234 Blast hits to 234 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 155; Fungi - 4; Plants - 74; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G11397.1p  transcript_id AT3G11397.1  protein_id AT3G11397.1p  transcript_id AT3G11397.1  
At3g11400	chr3:003578536	0.0	W/3578536-3578872,3579161-3579189,3579251-3579302,3579819-3580366	AT3G11400.2  CDS  gene_syn ATEIF3G1, EIF3G1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3G1  gene EIF3G1  function One of the 2 genes that code for the G subunit of eukaryotic initiation factor 3 (EIF3).  go_component eukaryotic translation initiation factor 3 complex|GO:0005852|11042177|IDA  go_process translational initiation|GO:0006413||TAS  go_function RNA binding|GO:0003723||ISS  go_function translation initiation factor activity|GO:0003743|11042177|TAS  go_function translation initiation factor activity|GO:0003743||ISS  product eukaryotic translation initiation factor 3G / eIF3g  note EUKARYOTIC TRANSLATION INITIATION FACTOR 3G1 (EIF3G1); FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: eukaryotic translation initiation factor 3 complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Translation initiation factor 3, RNA-binding subunit (InterPro:IPR017334); BEST Arabidopsis thaliana protein match is: EIF3G2; RNA binding / translation initiation factor (TAIR:AT5G06000.1).  protein_id AT3G11400.2p  transcript_id AT3G11400.2  protein_id AT3G11400.2p  transcript_id AT3G11400.2  
At3g11400	chr3:003578536	0.0	W/3578536-3578872,3579819-3580366	AT3G11400.1  CDS  gene_syn ATEIF3G1, EIF3G1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3G1  gene EIF3G1  function One of the 2 genes that code for the G subunit of eukaryotic initiation factor 3 (EIF3).  go_component plasma membrane|GO:0005886|17317660|IDA  go_component eukaryotic translation initiation factor 3 complex|GO:0005852|11042177|IDA  go_process translational initiation|GO:0006413||TAS  go_function RNA binding|GO:0003723||ISS  go_function translation initiation factor activity|GO:0003743|11042177|TAS  go_function translation initiation factor activity|GO:0003743||ISS  product eukaryotic translation initiation factor 3G / eIF3g  note EUKARYOTIC TRANSLATION INITIATION FACTOR 3G1 (EIF3G1); FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: eukaryotic translation initiation factor 3 complex, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Translation initiation factor 3, RNA-binding subunit (InterPro:IPR017334), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: EIF3G2; RNA binding / translation initiation factor (TAIR:AT5G06000.1); Has 13880 Blast hits to 10975 proteins in 584 species: Archae - 8; Bacteria - 999; Metazoa - 7803; Fungi - 1633; Plants - 2092; Viruses - 0; Other Eukaryotes - 1345 (source: NCBI BLink).  protein_id AT3G11400.1p  transcript_id AT3G11400.1  protein_id AT3G11400.1p  transcript_id AT3G11400.1  
At3g11405	chr3:003580895	0.0	W/3580895-3581359	AT3G11405.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 45 Blast hits to 45 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G11405.1p  transcript_id AT3G11405.1  protein_id AT3G11405.1p  transcript_id AT3G11405.1  
At3g11410	chr3:003585206	0.0	C/3585206-3585649,3584785-3585120,3584587-3584692,3584181-3584494	AT3G11410.1  CDS  gene_syn AHG3, ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA, ATPP2CA, PP2CA  gene PP2CA  function Encodes protein phosphatase 2C. Negative regulator of ABA signalling. Expressed in seeds during germination. mRNA up-regulated by drought and ABA.  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_process response to cold|GO:0009409|16214899|IEP  go_process response to water deprivation|GO:0009414|16361522|IEP  go_process response to water deprivation|GO:0009414|18552355|IEP  go_process response to abscisic acid stimulus|GO:0009737|16361522|IEP  go_process abscisic acid mediated signaling|GO:0009738|16339800|IMP  go_process abscisic acid mediated signaling|GO:0009738|9448270|TAS  go_process negative regulation of abscisic acid mediated signaling|GO:0009788|16339800|IMP  go_process negative regulation of abscisic acid mediated signaling|GO:0009788|16361522|IMP  go_process regulation of stomatal movement|GO:0010119|16361522|IMP  go_function protein serine/threonine phosphatase activity|GO:0004722|16339800|IMP  go_function protein serine/threonine phosphatase activity|GO:0004722|9448270|TAS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  go_function protein binding|GO:0005515|11181729|IPI  product PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA); protein binding / protein serine/threonine phosphatase  note ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA (PP2CA); FUNCTIONS IN: protein binding, protein serine/threonine phosphatase activity; INVOLVED IN: in 6 processes; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT1G07430.1); Has 4465 Blast hits to 4437 proteins in 318 species: Archae - 0; Bacteria - 183; Metazoa - 1420; Fungi - 528; Plants - 1362; Viruses - 7; Other Eukaryotes - 965 (source: NCBI BLink).  protein_id AT3G11410.1p  transcript_id AT3G11410.1  protein_id AT3G11410.1p  transcript_id AT3G11410.1  
At3g11420	chr3:003591834	0.0	W/3591834-3592700,3593580-3594122,3594216-3594323	AT3G11420.1  CDS  go_process biological_process|GO:0008150||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product fringe-related protein  note fringe-related protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: fringe-related protein (TAIR:AT2G37730.1); Has 482 Blast hits to 478 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 192; Fungi - 141; Plants - 134; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT3G11420.1p  transcript_id AT3G11420.1  protein_id AT3G11420.1p  transcript_id AT3G11420.1  
At3g11430	chr3:003595911	0.0	W/3595911-3596498,3596758-3597678	AT3G11430.1  CDS  gene_syn ATGPAT5, GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 5, GPAT5  gene GPAT5  function Encodes a protein with glycerol-3-phosphate acyltransferase activity, involved in the biosynthesis of suberin polyester.  go_process metabolic process|GO:0008152||ISS  go_process suberin biosynthetic process|GO:0010345|17259262|IMP  go_function 1-acylglycerol-3-phosphate O-acyltransferase activity|GO:0003841|12897259|IGI  go_function acyltransferase activity|GO:0008415||ISS  go_function organic anion transmembrane transporter activity|GO:0008514||ISS  product GPAT5 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 5); 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase/ organic anion transmembrane transporter  note GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 5 (GPAT5); FUNCTIONS IN: organic anion transmembrane transporter activity, 1-acylglycerol-3-phosphate O-acyltransferase activity, acyltransferase activity; INVOLVED IN: metabolic process, suberin biosynthetic process; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: GPAT7 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 7); 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase (TAIR:AT5G06090.1); Has 208 Blast hits to 204 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 22; Fungi - 0; Plants - 184; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G11430.1p  transcript_id AT3G11430.1  protein_id AT3G11430.1p  transcript_id AT3G11430.1  
At3g11435	chr3:003599776	0.0	C/3599776-3599908	AT3G11435.1  miRNA  gene_syn MICRORNA172C, MIR172C  gene MIR172C  function Encodes a microRNA that targets several genes containing AP2 domains including AP2. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: AGAAUCUUGAUGAUGCUGCAG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR172C (MICRORNA172C); miRNA  transcript_id AT3G11435.1  
At3g11440	chr3:003603056	0.0	W/3603056-3603427,3603547-3604555,3604649-3604929	AT3G11440.1  CDS  gene_syn ATMYB65, MYB DOMAIN PROTEIN 65, MYB65  gene MYB65  function Member of the R2R3-MYB gene family. Similar to GA-induced Barley myb gene. May be induced during germination in response to GA. Double mutants with MYB33 are male sterile, showing defects in pollen development and anther development. Contains a binding site for miRNA159 and may be spatially regulated by this micro RNA. The male sterile phenotype of the MYB33/MYB65 double mutant is light and temperature sensitive. Fertility can be restored with increased light intensity and lower temperatures.  go_component nucleus|GO:0005634|11743113|TAS  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process gibberellic acid mediated signaling|GO:0009740|11743113|TAS  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process pollen sperm cell differentiation|GO:0048235|15722475|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11743113|TAS  product MYB65 (MYB DOMAIN PROTEIN 65); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 65 (MYB65); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to ethylene stimulus, pollen sperm cell differentiation, gibberellic acid mediated signaling, regulation of transcription, response to salicylic acid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, GAMYB (InterPro:IPR016310), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: MYB33 (MYB DOMAIN PROTEIN 33); DNA binding / transcription factor (TAIR:AT5G06100.3); Has 6377 Blast hits to 5952 proteins in 353 species: Archae - 0; Bacteria - 0; Metazoa - 606; Fungi - 297; Plants - 3899; Viruses - 3; Other Eukaryotes - 1572 (source: NCBI BLink).  protein_id AT3G11440.1p  transcript_id AT3G11440.1  protein_id AT3G11440.1p  transcript_id AT3G11440.1  
At3g11450	chr3:003606997	0.0	C/3606997-3607477,3605459-3606969	AT3G11450.1  CDS  go_function DNA binding|GO:0003677||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein / cell division protein-related  note DNAJ heat shock N-terminal domain-containing protein / cell division protein-related; FUNCTIONS IN: heat shock protein binding, DNA binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), MYB-like (InterPro:IPR017877), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein / cell division protein-related (TAIR:AT5G06110.1); Has 51717 Blast hits to 34681 proteins in 2122 species: Archae - 166; Bacteria - 8879; Metazoa - 19405; Fungi - 4515; Plants - 2164; Viruses - 194; Other Eukaryotes - 16394 (source: NCBI BLink).  protein_id AT3G11450.1p  transcript_id AT3G11450.1  protein_id AT3G11450.1p  transcript_id AT3G11450.1  
At3g11460	chr3:003608250	0.0	W/3608250-3610121	AT3G11460.1  CDS  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G30700.1); Has 14044 Blast hits to 5114 proteins in 165 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 51; Plants - 13649; Viruses - 0; Other Eukaryotes - 279 (source: NCBI BLink).  protein_id AT3G11460.1p  transcript_id AT3G11460.1  protein_id AT3G11460.1p  transcript_id AT3G11460.1  
At3g11470	chr3:003611729	0.0	C/3611729-3611788,3611340-3611402,3611149-3611250,3610895-3611050,3610705-3610809,3610428-3610557,3610261-3610340	AT3G11470.3  CDS  go_process macromolecule biosynthetic process|GO:0009059||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function holo-[acyl-carrier-protein] synthase activity|GO:0008897||IEA  go_process metabolic process|GO:0008152||ISS  go_function transferase activity|GO:0016740||ISS  product 4 -phosphopantetheinyl transferase family protein  note 4 -phosphopantetheinyl transferase family protein; FUNCTIONS IN: holo-[acyl-carrier-protein] synthase activity, magnesium ion binding, transferase activity; INVOLVED IN: metabolic process, macromolecule biosynthetic process; CONTAINS InterPro DOMAIN/s: 4&apos;-phosphopantetheinyl transferase (InterPro:IPR008278); BEST Arabidopsis thaliana protein match is: holo-[acyl-carrier-protein] synthase/ magnesium ion binding (TAIR:AT2G02770.1); Has 980 Blast hits to 980 proteins in 420 species: Archae - 0; Bacteria - 795; Metazoa - 81; Fungi - 8; Plants - 33; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT3G11470.3p  transcript_id AT3G11470.3  protein_id AT3G11470.3p  transcript_id AT3G11470.3  
At3g11470	chr3:003612009	0.0	C/3612009-3612094,3611724-3611904,3611340-3611402,3611149-3611250,3610895-3611050,3610705-3610809,3610428-3610557,3610261-3610340	AT3G11470.2  CDS  go_process macromolecule biosynthetic process|GO:0009059||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function holo-[acyl-carrier-protein] synthase activity|GO:0008897||IEA  go_process metabolic process|GO:0008152||ISS  go_function transferase activity|GO:0016740||ISS  product 4 -phosphopantetheinyl transferase family protein  note 4 -phosphopantetheinyl transferase family protein; FUNCTIONS IN: holo-[acyl-carrier-protein] synthase activity, magnesium ion binding, transferase activity; INVOLVED IN: metabolic process, macromolecule biosynthetic process; CONTAINS InterPro DOMAIN/s: 4&apos;-phosphopantetheinyl transferase (InterPro:IPR008278); BEST Arabidopsis thaliana protein match is: holo-[acyl-carrier-protein] synthase/ magnesium ion binding (TAIR:AT2G02770.1); Has 1071 Blast hits to 1071 proteins in 436 species: Archae - 4; Bacteria - 863; Metazoa - 85; Fungi - 9; Plants - 35; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT3G11470.2p  transcript_id AT3G11470.2  protein_id AT3G11470.2p  transcript_id AT3G11470.2  
At3g11470	chr3:003612009	0.0	C/3612009-3612094,3611729-3611904,3611340-3611407,3611149-3611250,3610895-3611050,3610705-3610809,3610428-3610557,3610261-3610340	AT3G11470.1  CDS  go_process macromolecule biosynthetic process|GO:0009059||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function holo-[acyl-carrier-protein] synthase activity|GO:0008897||IEA  go_process metabolic process|GO:0008152||ISS  go_function transferase activity|GO:0016740||ISS  product 4 -phosphopantetheinyl transferase family protein  note 4 -phosphopantetheinyl transferase family protein; FUNCTIONS IN: holo-[acyl-carrier-protein] synthase activity, magnesium ion binding, transferase activity; INVOLVED IN: metabolic process, macromolecule biosynthetic process; CONTAINS InterPro DOMAIN/s: 4&apos;-phosphopantetheinyl transferase (InterPro:IPR008278); BEST Arabidopsis thaliana protein match is: holo-[acyl-carrier-protein] synthase/ magnesium ion binding (TAIR:AT2G02770.1); Has 1070 Blast hits to 1070 proteins in 436 species: Archae - 2; Bacteria - 864; Metazoa - 83; Fungi - 13; Plants - 35; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT3G11470.1p  transcript_id AT3G11470.1  protein_id AT3G11470.1p  transcript_id AT3G11470.1  
At3g11480	chr3:003614544	0.0	W/3614544-3614581,3614756-3614858,3615881-3616279,3616373-3616630,3616796-3617137	AT3G11480.1  CDS  gene_syn ATBSMT1, BSMT1  gene BSMT1  function The gene encodes a SABATH methyltransferase that methylates both salicylic acid and benzoic acid. It is highly expressed in flowers, induced by biotic and abiotic stress and thought to be involved in direct defense mechanism.  go_component cellular_component|GO:0005575||ND  go_process defense response|GO:0006952|14617060|IEP  go_process response to wounding|GO:0009611|14617060|IEP  go_process response to other organism|GO:0051707|14617060|IEP  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757|14617060|IDA  product BSMT1; S-adenosylmethionine-dependent methyltransferase  note BSMT1; FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity; INVOLVED IN: response to other organism, response to wounding, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: NAMT1; S-adenosylmethionine-dependent methyltransferase (TAIR:AT5G04370.1); Has 658 Blast hits to 649 proteins in 101 species: Archae - 0; Bacteria - 54; Metazoa - 12; Fungi - 3; Plants - 451; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).  protein_id AT3G11480.1p  transcript_id AT3G11480.1  protein_id AT3G11480.1p  transcript_id AT3G11480.1  
At3g11490	chr3:003619173	0.0	C/3619173-3619567,3618582-3618702,3618366-3618485,3618040-3618270,3617523-3617963	AT3G11490.1  CDS  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_process signal transduction|GO:0007165||IEA  go_function Rac GTPase activator activity|GO:0030675||ISS  product rac GTPase activating protein, putative  note rac GTPase activating protein, putative; FUNCTIONS IN: Rac GTPase activator activity; INVOLVED IN: signal transduction; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095), Rho GTPase activation protein (InterPro:IPR008936), RhoGAP (InterPro:IPR000198); BEST Arabidopsis thaliana protein match is: rac GTPase activating protein, putative (TAIR:AT5G22400.1); Has 3571 Blast hits to 3570 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 2776; Fungi - 347; Plants - 111; Viruses - 0; Other Eukaryotes - 337 (source: NCBI BLink).  protein_id AT3G11490.1p  transcript_id AT3G11490.1  protein_id AT3G11490.1p  transcript_id AT3G11490.1  
At3g11500	chr3:003622440	0.0	C/3622440-3622474,3622282-3622304,3621774-3621895,3621626-3621685	AT3G11500.1  CDS  go_component nucleolus|GO:0005730|15496452|IDA  go_component nucleus|GO:0005634||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_function molecular_function|GO:0003674||ND  product small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative  note small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus, small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) (TAIR:AT2G23930.1); Has 921 Blast hits to 921 proteins in 197 species: Archae - 84; Bacteria - 0; Metazoa - 385; Fungi - 191; Plants - 117; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).  protein_id AT3G11500.1p  transcript_id AT3G11500.1  protein_id AT3G11500.1p  transcript_id AT3G11500.1  
At3g11505	chr3:003622692	0.0	C/3622692-3622763	AT3G11505.1  tRNA  gene_syn 60203.TRNA-PRO-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: CGG)  transcript_id AT3G11505.1  
At3g11510	chr3:003624864	0.0	C/3624864-3624866,3624448-3624567,3624315-3624360,3624132-3624217,3623920-3624049,3623757-3623824	AT3G11510.1  CDS  go_component nucleolus|GO:0005730|15496452|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S14 (RPS14B)  note 40S ribosomal protein S14 (RPS14B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S11 (InterPro:IPR001971), Ribosomal S11, conserved site (InterPro:IPR018102); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S14 (RPS14A) (TAIR:AT2G36160.1); Has 6246 Blast hits to 6246 proteins in 1750 species: Archae - 169; Bacteria - 2829; Metazoa - 487; Fungi - 108; Plants - 517; Viruses - 0; Other Eukaryotes - 2136 (source: NCBI BLink).  protein_id AT3G11510.1p  transcript_id AT3G11510.1  protein_id AT3G11510.1p  transcript_id AT3G11510.1  
At3g11520	chr3:003627100	0.0	C/3627100-3627139,3626568-3626938,3626387-3626488,3625708-3626294,3625475-3625619	AT3G11520.1  CDS  gene_syn CYC2, CYCB1;3, CYCLIN 2, CYCLIN B1;3  gene CYCB1;3  function Encodes a B-type mitotic cyclin.  go_component nucleus|GO:0005634||IEA  go_process cell cycle|GO:0007049|8938409|IEP  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase regulator activity|GO:0016538||ISS  product CYCB1;3 (CYCLIN B1;3); cyclin-dependent protein kinase regulator  note CYCLIN B1;3 (CYCB1;3); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: response to cyclopentenone, regulation of cell cycle, cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYC1BAT; cyclin-dependent protein kinase regulator (TAIR:AT5G06150.1); Has 3453 Blast hits to 3452 proteins in 300 species: Archae - 0; Bacteria - 0; Metazoa - 1779; Fungi - 380; Plants - 756; Viruses - 38; Other Eukaryotes - 500 (source: NCBI BLink).  protein_id AT3G11520.1p  transcript_id AT3G11520.1  protein_id AT3G11520.1p  transcript_id AT3G11520.1  
At3g11530	chr3:003629853	0.0	C/3629853-3629885,3629064-3629188,3628801-3628984	AT3G11530.1  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product vacuolar protein sorting 55 family protein / VPS55 family protein  note vacuolar protein sorting 55 family protein / VPS55 family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting 55 (InterPro:IPR007262); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting 55 family protein / VPS55 family protein (TAIR:AT1G32410.5); Has 197 Blast hits to 197 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 85; Plants - 48; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT3G11530.1p  transcript_id AT3G11530.1  protein_id AT3G11530.1p  transcript_id AT3G11530.1  
At3g11530	chr3:003630306	0.0	C/3630306-3630324,3630010-3630010,3629853-3629904,3629064-3629188,3628801-3628984	AT3G11530.2  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product vacuolar protein sorting 55 family protein / VPS55 family protein  note vacuolar protein sorting 55 family protein / VPS55 family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting 55 (InterPro:IPR007262); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting 55 family protein / VPS55 family protein (TAIR:AT1G32410.5); Has 249 Blast hits to 249 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 88; Plants - 48; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT3G11530.2p  transcript_id AT3G11530.2  protein_id AT3G11530.2p  transcript_id AT3G11530.2  
At3g11540	chr3:003632842	0.0	W/3632842-3633237,3633395-3633556,3633643-3633763,3635302-3635381,3635462-3635526,3635607-3635805,3635923-3636117,3636212-3636306,3636402-3636537,3636632-3636849,3636925-3637052,3637144-3637547	AT3G11540.2  CDS  gene_syn SPINDLY, SPY  gene SPY  function Encodes a N-acetyl glucosamine transferase that may glycosylate other molecules involved in GA signaling. Contains a tetratricopeptide repeat region, and a novel carboxy-terminal region. SPY acts as both a repressor of GA responses and as a positive regulation of cytokinin signalling. SPY may be involved in reducing ROS accumulation in response to stress.  go_component nucleus|GO:0005634|12068105|IDA  go_component nucleus|GO:0005634|12068105|TAS  go_component cytoplasm|GO:0005737|12068105|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process cytokinin mediated signaling|GO:0009736|15608330|IMP  go_process gibberellic acid mediated signaling|GO:0009740|12068105|TAS  go_process negative regulation of gibberellic acid mediated signaling|GO:0009938|10645426|IGI  go_process regulation of oxygen and reactive oxygen species metabolic process|GO:0080010|18450450|IMP  go_function protein binding|GO:0005515|15155885|IPI  go_function protein N-acetylglucosaminyltransferase activity|GO:0016262|10529823|TAS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product SPY (SPINDLY); protein N-acetylglucosaminyltransferase/ protein binding / transferase, transferring glycosyl groups  note SPINDLY (SPY); FUNCTIONS IN: protein N-acetylglucosaminyltransferase activity, protein binding, transferase activity, transferring glycosyl groups; INVOLVED IN: negative regulation of gibberellic acid mediated signaling, regulation of oxygen and reactive oxygen species metabolic process, cytokinin mediated signaling, gibberellic acid mediated signaling; LOCATED IN: cytosol, nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: SEC (secret agent); transferase, transferring glycosyl groups (TAIR:AT3G04240.1); Has 22242 Blast hits to 11626 proteins in 987 species: Archae - 1155; Bacteria - 8111; Metazoa - 3034; Fungi - 545; Plants - 600; Viruses - 0; Other Eukaryotes - 8797 (source: NCBI BLink).  protein_id AT3G11540.2p  transcript_id AT3G11540.2  protein_id AT3G11540.2p  transcript_id AT3G11540.2  
At3g11540	chr3:003632842	0.0	W/3632842-3633237,3633395-3633556,3633643-3633818,3633924-3633999,3634288-3634416,3634677-3634796,3634879-3634947,3635032-3635113,3635287-3635381,3635462-3635526,3635607-3635805,3635923-3636117,3636212-3636306,3636402-3636537,3636632-3636849,3636925-3637052,3637144-3637547	AT3G11540.1  CDS  gene_syn SPINDLY, SPY  gene SPY  function Encodes a N-acetyl glucosamine transferase that may glycosylate other molecules involved in GA signaling. Contains a tetratricopeptide repeat region, and a novel carboxy-terminal region. SPY acts as both a repressor of GA responses and as a positive regulation of cytokinin signalling. SPY may be involved in reducing ROS accumulation in response to stress.  go_component nucleus|GO:0005634|12068105|IDA  go_component nucleus|GO:0005634|12068105|TAS  go_component cytoplasm|GO:0005737|12068105|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process cytokinin mediated signaling|GO:0009736|15608330|IMP  go_process gibberellic acid mediated signaling|GO:0009740|12068105|TAS  go_process negative regulation of gibberellic acid mediated signaling|GO:0009938|10645426|IGI  go_process regulation of oxygen and reactive oxygen species metabolic process|GO:0080010|18450450|IMP  go_function protein binding|GO:0005515|15155885|IPI  go_function protein N-acetylglucosaminyltransferase activity|GO:0016262|10529823|TAS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product SPY (SPINDLY); protein N-acetylglucosaminyltransferase/ protein binding / transferase, transferring glycosyl groups  note SPINDLY (SPY); FUNCTIONS IN: protein N-acetylglucosaminyltransferase activity, protein binding, transferase activity, transferring glycosyl groups; INVOLVED IN: negative regulation of gibberellic acid mediated signaling, regulation of oxygen and reactive oxygen species metabolic process, cytokinin mediated signaling, gibberellic acid mediated signaling; LOCATED IN: cytosol, nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: SEC (secret agent); transferase, transferring glycosyl groups (TAIR:AT3G04240.1); Has 60457 Blast hits to 21852 proteins in 1424 species: Archae - 1777; Bacteria - 22502; Metazoa - 11381; Fungi - 1958; Plants - 1372; Viruses - 3; Other Eukaryotes - 21464 (source: NCBI BLink).  protein_id AT3G11540.1p  transcript_id AT3G11540.1  protein_id AT3G11540.1p  transcript_id AT3G11540.1  
At3g11550	chr3:003638262	0.0	W/3638262-3638536,3638627-3638750,3638837-3639052	AT3G11550.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane family protein  note integral membrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT5G06200.1); Has 262 Blast hits to 262 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 262; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G11550.1p  transcript_id AT3G11550.1  protein_id AT3G11550.1p  transcript_id AT3G11550.1  
At3g11560	chr3:003639553	0.0	W/3639553-3639593,3639873-3640308,3640402-3640493,3640924-3641088,3641218-3641611,3641965-3642083,3642187-3642259,3642337-3642563,3642655-3642699,3643048-3643090,3643226-3643417,3643631-3643734,3643859-3643925,3644146-3644295,3644643-3644765,3644872-3645042,3645247-3645306,3645390-3645506	AT3G11560.2  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  product unknown protein  note LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LETM1-like (InterPro:IPR011685); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06220.1); Has 320 Blast hits to 313 proteins in 106 species: Archae - 0; Bacteria - 8; Metazoa - 121; Fungi - 108; Plants - 51; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT3G11560.2p  transcript_id AT3G11560.2  protein_id AT3G11560.2p  transcript_id AT3G11560.2  
At3g11560	chr3:003639553	0.0	W/3639553-3639593,3639873-3640308,3640402-3640493,3640924-3641088,3641218-3641611,3641965-3642083,3642187-3642259,3642337-3642563,3642655-3642699,3643048-3643090,3643226-3643417,3643631-3643734,3643859-3643925,3644146-3644295,3644643-3644765,3644872-3645042,3645247-3645306,3645390-3645506	AT3G11560.3  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  product unknown protein  note LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LETM1-like (InterPro:IPR011685); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06220.1); Has 320 Blast hits to 313 proteins in 106 species: Archae - 0; Bacteria - 8; Metazoa - 121; Fungi - 108; Plants - 51; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT3G11560.3p  transcript_id AT3G11560.3  protein_id AT3G11560.3p  transcript_id AT3G11560.3  
At3g11560	chr3:003639553	0.0	W/3639553-3639593,3639873-3640308,3640402-3640493,3640924-3641088,3641218-3641611,3641965-3642083,3642187-3642259,3642337-3642563,3642655-3642699,3643048-3643090,3643226-3643417,3643631-3643734,3643859-3643925,3644146-3644295,3644643-3644765,3644872-3645042,3645247-3645306,3645390-3645506	AT3G11560.4  CDS  go_component chloroplast|GO:0009507|18431481|IDA  product unknown protein  note LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LETM1-like (InterPro:IPR011685); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06220.1); Has 320 Blast hits to 313 proteins in 106 species: Archae - 0; Bacteria - 8; Metazoa - 121; Fungi - 108; Plants - 51; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT3G11560.4p  transcript_id AT3G11560.4  protein_id AT3G11560.4p  transcript_id AT3G11560.4  
At3g11560	chr3:003639553	0.0	W/3639553-3639593,3639873-3640308,3640402-3640493,3640924-3641088,3641218-3641611,3641965-3642083,3642187-3642259,3642337-3642563,3642655-3642699,3643048-3643090,3643226-3643450	AT3G11560.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  product unknown protein  note unknown protein; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06220.1); Has 30 Blast hits to 29 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G11560.1p  transcript_id AT3G11560.1  protein_id AT3G11560.1p  transcript_id AT3G11560.1  
At3g11570	chr3:003646922	0.0	C/3646922-3647328,3646214-3646603,3645957-3646115,3645540-3645867	AT3G11570.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06230.1); Has 711 Blast hits to 699 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 708; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G11570.1p  transcript_id AT3G11570.1  protein_id AT3G11570.1p  transcript_id AT3G11570.1  
At3g11580	chr3:003650579	0.0	C/3650579-3651271	AT3G11580.2  CDS  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component cellular_component|GO:0005575||ND  go_function transcription factor activity|GO:0003700|11118137|ISS  product DNA-binding protein, putative  note DNA-binding protein, putative; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT5G06250.2); Has 716 Blast hits to 714 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 716; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G11580.2p  transcript_id AT3G11580.2  protein_id AT3G11580.2p  transcript_id AT3G11580.2  
At3g11580	chr3:003650695	0.0	C/3650695-3651271,3649880-3650052,3649165-3649218	AT3G11580.1  CDS  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component cellular_component|GO:0005575||ND  go_function transcription factor activity|GO:0003700|11118137|ISS  product DNA-binding protein, putative  note DNA-binding protein, putative; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT5G06250.2); Has 716 Blast hits to 714 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 716; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G11580.1p  transcript_id AT3G11580.1  protein_id AT3G11580.1p  transcript_id AT3G11580.1  
At3g11590	chr3:003660628	0.0	W/3660628-3661110,3661786-3661908,3662275-3663537	AT3G11590.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  product unknown protein  note unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22310.1); Has 18950 Blast hits to 12386 proteins in 794 species: Archae - 267; Bacteria - 1381; Metazoa - 9845; Fungi - 1311; Plants - 683; Viruses - 61; Other Eukaryotes - 5402 (source: NCBI BLink).  protein_id AT3G11590.1p  transcript_id AT3G11590.1  protein_id AT3G11590.1p  transcript_id AT3G11590.1  
At3g11591	chr3:003663780	0.0	C/3663780-3663971	AT3G11591.1  CDS  product unknown protein  note unknown protein; Has 9 Blast hits to 9 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G11591.1p  transcript_id AT3G11591.1  protein_id AT3G11591.1p  transcript_id AT3G11591.1  
At3g11600	chr3:003667337	0.0	W/3667337-3667690	AT3G11600.1  CDS  gene_syn F24K9.6  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06270.1); Has 93 Blast hits to 93 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G11600.1p  transcript_id AT3G11600.1  protein_id AT3G11600.1p  transcript_id AT3G11600.1  
At3g11620	chr3:003671664	0.0	C/3671664-3671734,3671501-3671574,3671348-3671419,3671196-3671224,3671035-3671085,3670878-3670928,3670689-3670748,3670509-3670591,3670270-3670417,3670030-3670110	AT3G11620.3  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 227 Blast hits to 227 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 59; Plants - 24; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT3G11620.3p  transcript_id AT3G11620.3  protein_id AT3G11620.3p  transcript_id AT3G11620.3  
At3g11620	chr3:003671664	0.0	C/3671664-3671734,3671501-3671574,3671348-3671419,3671196-3671224,3671035-3671085,3670878-3670928,3670689-3670748,3670509-3670591,3670270-3670417,3670030-3670110	AT3G11620.4  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 227 Blast hits to 227 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 59; Plants - 24; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT3G11620.4p  transcript_id AT3G11620.4  protein_id AT3G11620.4p  transcript_id AT3G11620.4  
At3g11620	chr3:003671664	0.0	C/3671664-3671734,3671501-3671574,3671348-3671419,3671196-3671224,3671035-3671085,3670878-3670928,3670689-3670748,3670509-3670591,3670270-3670417,3670060-3670110,3669785-3669889,3669551-3669694	AT3G11620.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 239 Blast hits to 236 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 107; Fungi - 67; Plants - 26; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT3G11620.1p  transcript_id AT3G11620.1  protein_id AT3G11620.1p  transcript_id AT3G11620.1  
At3g11620	chr3:003671664	0.0	C/3671664-3671734,3671501-3671574,3671348-3671419,3671196-3671224,3671035-3671085,3670878-3670928,3670689-3670748,3670509-3670591,3670270-3670417,3670060-3670110,3669785-3669889,3669551-3669694	AT3G11620.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 239 Blast hits to 236 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 107; Fungi - 67; Plants - 26; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT3G11620.2p  transcript_id AT3G11620.2  protein_id AT3G11620.2p  transcript_id AT3G11620.2  
At3g11630	chr3:003672189	0.0	W/3672189-3672395,3672779-3672853,3673015-3673096,3673192-3673271,3673396-3673521,3673616-3673729,3673821-3673937	AT3G11630.1  CDS  gene_syn T19F11.3  function Encodes a 2-Cys peroxiredoxin (2-Cys PrxA) that contains two catalytic Cys residues.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_component stromule|GO:0010319|16923014|IDA  go_process response to cold|GO:0009409|16923014|IEP  go_function antioxidant activity|GO:0016209||ISS  go_function peroxiredoxin activity|GO:0051920|12529539|IDA  product 2-cys peroxiredoxin, chloroplast (BAS1)  note 2-cys peroxiredoxin, chloroplast (BAS1); FUNCTIONS IN: peroxiredoxin activity, antioxidant activity; INVOLVED IN: response to cold, defense response to bacterium; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: 2-Cys Prx B (2-Cysteine peroxiredoxin B); antioxidant/ peroxiredoxin (TAIR:AT5G06290.1); Has 11377 Blast hits to 11376 proteins in 1573 species: Archae - 376; Bacteria - 6223; Metazoa - 976; Fungi - 241; Plants - 304; Viruses - 0; Other Eukaryotes - 3257 (source: NCBI BLink).  protein_id AT3G11630.1p  transcript_id AT3G11630.1  protein_id AT3G11630.1p  transcript_id AT3G11630.1  
At3g11640	chr3:003674501	0.0	W/3674501-3675061	AT3G11640.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 23 Blast hits to 23 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G11640.1p  transcript_id AT3G11640.1  protein_id AT3G11640.1p  transcript_id AT3G11640.1  
At3g11650	chr3:003676264	0.0	C/3676264-3676986	AT3G11650.1  CDS  gene_syn NHL2  gene NHL2  function Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus and spermine. Overexpression of the gene induces the expression of PR-1 gene and shows light-dependent  speck disease-like  symptom on leaves. The gene product is localized to the chloroplast  go_component chloroplast|GO:0009507|14666423|IDA  go_process defense response to virus|GO:0051607|14666423|IEP  go_function molecular_function|GO:0003674||ND  product NHL2  note NHL2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to virus; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: NHL3 (TAIR:AT5G06320.1); Has 674 Blast hits to 673 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 674; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G11650.1p  transcript_id AT3G11650.1  protein_id AT3G11650.1p  transcript_id AT3G11650.1  
At3g11660	chr3:003679031	0.0	C/3679031-3679660	AT3G11660.1  CDS  gene_syn NHL1  gene NHL1  function encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus. Localization of the gene product is similar to that of NHL3 (plasma membrane) but it is yet inconclusive.  go_process defense response to virus|GO:0051607|14666423|IEP  go_function molecular_function|GO:0003674||ND  product NHL1  note NHL1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to virus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: harpin-induced family protein / HIN1 family protein / harpin-responsive family protein (TAIR:AT3G52470.1); Has 602 Blast hits to 602 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 602; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G11660.1p  transcript_id AT3G11660.1  protein_id AT3G11660.1p  transcript_id AT3G11660.1  
At3g11670	chr3:003683800	0.0	C/3683800-3684495,3683572-3683604,3683370-3683457,3682501-3682982,3682134-3682400,3681679-3682032	AT3G11670.2  CDS  gene_syn DGD1, DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, DIGALACTOSYLDIACYLGLYCEROL SYNTHASE 1  gene DGD1  function Responsible for the final assembly of galactolipids in photosynthetic membranes. Provides stability to the PS I core complex (e.g. subunits PsaD, PsaE).  go_component mitochondrion|GO:0005739|14671022|IDA  go_component chloroplast outer membrane|GO:0009707|11429410|IDA  go_process lipid transport|GO:0006869|10381884|TAS  go_process cellular response to nitrogen starvation|GO:0006995|17270009|IEP  go_process cellular response to magnesium starvation|GO:0010350|17270009|IEP  go_process galactolipid biosynthetic process|GO:0019375|10381884|IDA  go_process photosystem I stabilization|GO:0042550|15961080|TAS  go_function transferase activity, transferring glycosyl groups|GO:0016757|10973486|IMP  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function UDP-galactosyltransferase activity|GO:0035250|15590685|TAS  go_function galactolipid galactosyltransferase activity|GO:0046480|10381884|IDA  product DGD1 (DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1); UDP-galactosyltransferase/ galactolipid galactosyltransferase/ transferase, transferring glycosyl groups  note DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1 (DGD1); FUNCTIONS IN: transferase activity, transferring glycosyl groups, galactolipid galactosyltransferase activity, UDP-galactosyltransferase activity; INVOLVED IN: photosystem I stabilization, cellular response to magnesium starvation, galactolipid biosynthetic process, lipid transport, cellular response to nitrogen starvation; LOCATED IN: chloroplast outer membrane, mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: DGD2; UDP-galactosyltransferase/ UDP-glycosyltransferase/ digalactosyldiacylglycerol synthase/ transferase, transferring glycosyl groups (TAIR:AT4G00550.1); Has 97 Blast hits to 97 proteins in 18 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT3G11670.2p  transcript_id AT3G11670.2  protein_id AT3G11670.2p  transcript_id AT3G11670.2  
At3g11670	chr3:003683800	0.0	C/3683800-3684495,3683572-3683604,3683370-3683457,3682501-3682982,3682134-3682400,3681683-3682032,3681090-3681600	AT3G11670.1  CDS  gene_syn DGD1, DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, DIGALACTOSYLDIACYLGLYCEROL SYNTHASE 1  gene DGD1  function Responsible for the final assembly of galactolipids in photosynthetic membranes. Provides stability to the PS I core complex (e.g. subunits PsaD, PsaE).  go_component mitochondrion|GO:0005739|14671022|IDA  go_component chloroplast outer membrane|GO:0009707|11429410|IDA  go_process lipid transport|GO:0006869|10381884|TAS  go_process cellular response to nitrogen starvation|GO:0006995|17270009|IEP  go_process cellular response to magnesium starvation|GO:0010350|17270009|IEP  go_process galactolipid biosynthetic process|GO:0019375|10381884|IDA  go_process photosystem I stabilization|GO:0042550|15961080|TAS  go_function transferase activity, transferring glycosyl groups|GO:0016757|10973486|IMP  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function UDP-galactosyltransferase activity|GO:0035250|15590685|TAS  go_function galactolipid galactosyltransferase activity|GO:0046480|10381884|IDA  product DGD1 (DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1); UDP-galactosyltransferase/ galactolipid galactosyltransferase/ transferase, transferring glycosyl groups  note DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1 (DGD1); FUNCTIONS IN: transferase activity, transferring glycosyl groups, galactolipid galactosyltransferase activity, UDP-galactosyltransferase activity; INVOLVED IN: photosystem I stabilization, cellular response to magnesium starvation, galactolipid biosynthetic process, lipid transport, cellular response to nitrogen starvation; LOCATED IN: chloroplast outer membrane, mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: DGD2; UDP-galactosyltransferase/ UDP-glycosyltransferase/ digalactosyldiacylglycerol synthase/ transferase, transferring glycosyl groups (TAIR:AT4G00550.1); Has 164 Blast hits to 164 proteins in 34 species: Archae - 4; Bacteria - 35; Metazoa - 0; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT3G11670.1p  transcript_id AT3G11670.1  protein_id AT3G11670.1p  transcript_id AT3G11670.1  
At3g11673	chr3:003685292	0.0	C/3685292-3685647	AT3G11673.1  pseudogenic_transcript  pseudo  function pseudogene of F-box family protein  
At3g11680	chr3:003689059	0.0	C/3689059-3689329,3688540-3688953,3688336-3688442,3688101-3688244,3686995-3687525	AT3G11680.1  CDS  product unknown protein  note unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0005 (InterPro:IPR006214); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G08440.1); Has 479 Blast hits to 478 proteins in 152 species: Archae - 0; Bacteria - 235; Metazoa - 0; Fungi - 20; Plants - 208; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT3G11680.1p  transcript_id AT3G11680.1  protein_id AT3G11680.1p  transcript_id AT3G11680.1  
At3g11690	chr3:003695484	0.0	W/3695484-3696242	AT3G11690.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06380.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G11690.1p  transcript_id AT3G11690.1  protein_id AT3G11690.1p  transcript_id AT3G11690.1  
At3g11700	chr3:003698992	0.0	W/3698992-3700309,3700901-3700971	AT3G11700.1  CDS  gene_syn FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 18 PRECURSOR, FLA18  gene FLA18  go_component vacuole|GO:0005773|15539469|IDA  go_process cell adhesion|GO:0007155||ISS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function molecular_function|GO:0003674||ND  product FLA18 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 18 PRECURSOR)  note FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 18 PRECURSOR (FLA18); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cyclopentenone, cell adhesion; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FLA17 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17 PRECURSOR) (TAIR:AT5G06390.1); Has 353 Blast hits to 337 proteins in 93 species: Archae - 0; Bacteria - 155; Metazoa - 24; Fungi - 0; Plants - 112; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT3G11700.1p  transcript_id AT3G11700.1  protein_id AT3G11700.1p  transcript_id AT3G11700.1  
At3g11710	chr3:003705495	0.0	C/3705495-3705613,3705311-3705395,3705105-3705164,3704856-3705021,3704686-3704779,3704510-3704595,3704316-3704419,3704161-3704223,3703882-3704007,3703404-3703783,3703145-3703301,3702910-3703053,3702616-3702828,3702473-3702530,3702359-3702384	AT3G11710.1  CDS  gene_syn ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 1, ATKRS-1  gene ATKRS-1  go_component cytoplasm|GO:0005737||IEA  go_process translation|GO:0006412||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_process lysyl-tRNA aminoacylation|GO:0006430||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function lysine-tRNA ligase activity|GO:0004824||IEA  go_function ATP binding|GO:0005524||IEA  go_process lysyl-tRNA aminoacylation|GO:0006430||ISS  go_function lysine-tRNA ligase activity|GO:0004824||ISS  go_function ATP binding|GO:0005524||ISS  product ATKRS-1 (ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 1); ATP binding / aminoacyl-tRNA ligase/ lysine-tRNA ligase/ nucleic acid binding / nucleotide binding  note ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 1 (ATKRS-1); FUNCTIONS IN: nucleotide binding, aminoacyl-tRNA ligase activity, lysine-tRNA ligase activity, ATP binding, nucleic acid binding; INVOLVED IN: lysyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (D, K and N) (InterPro:IPR004364), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D, K and N)-like (InterPro:IPR018150), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Lysyl-tRNA synthetase, class II, C-terminal (InterPro:IPR018149), Lysyl-tRNA synthetase, class II (InterPro:IPR002313), Aminoacyl-tRNA synthetase, class II, conserved region (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: OVA5 (OVULE ABORTION 5); ATP binding / aminoacyl-tRNA ligase/ lysine-tRNA ligase/ nucleic acid binding / nucleotide binding (TAIR:AT3G13490.1); Has 15525 Blast hits to 13421 proteins in 1696 species: Archae - 251; Bacteria - 8760; Metazoa - 567; Fungi - 510; Plants - 102; Viruses - 0; Other Eukaryotes - 5335 (source: NCBI BLink).  protein_id AT3G11710.1p  transcript_id AT3G11710.1  protein_id AT3G11710.1p  transcript_id AT3G11710.1  
At3g11720	chr3:003708193	0.0	C/3708193-3708310,3707985-3708115,3707790-3707898,3707680-3707719,3707503-3707592,3707303-3707402,3707106-3707209,3706915-3707017,3705991-3706824	AT3G11720.1  CDS  gene_syn T19F11.12  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06440.3); Has 2575 Blast hits to 1294 proteins in 194 species: Archae - 0; Bacteria - 136; Metazoa - 922; Fungi - 234; Plants - 75; Viruses - 16; Other Eukaryotes - 1192 (source: NCBI BLink).  protein_id AT3G11720.1p  transcript_id AT3G11720.1  protein_id AT3G11720.1p  transcript_id AT3G11720.1  
At3g11720	chr3:003708193	0.0	C/3708193-3708310,3707985-3708115,3707790-3707898,3707680-3707719,3707503-3707592,3707303-3707402,3707106-3707209,3706915-3707017,3705991-3706824	AT3G11720.2  CDS  gene_syn T19F11.12  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06440.3); Has 2575 Blast hits to 1294 proteins in 194 species: Archae - 0; Bacteria - 136; Metazoa - 922; Fungi - 234; Plants - 75; Viruses - 16; Other Eukaryotes - 1192 (source: NCBI BLink).  protein_id AT3G11720.2p  transcript_id AT3G11720.2  protein_id AT3G11720.2p  transcript_id AT3G11720.2  
At3g11720	chr3:003708681	0.0	C/3708681-3708721,3708502-3708600,3708193-3708332,3707985-3708115,3707790-3707898,3707680-3707719,3707503-3707592,3707303-3707402,3707106-3707209,3706915-3707017,3705991-3706824	AT3G11720.3  CDS  gene_syn T19F11.12  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06440.3).  protein_id AT3G11720.3p  transcript_id AT3G11720.3  protein_id AT3G11720.3p  transcript_id AT3G11720.3  
At3g11730	chr3:003711384	0.0	C/3711384-3711397,3711230-3711302,3711070-3711117,3710938-3710985,3710793-3710864,3710445-3710600,3710008-3710111,3709490-3709592	AT3G11730.1  CDS  gene_syn ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, ATFP8, ATRABD1, RAB GTPASE HOMOLOG D1, RABD1  gene ATFP8  function Encodes a member of the Rab GTPase family of proteins. This protein interacts with the tail region of a myosin XI protein (AT5G43900) in a GTP-dependent manner. It has also been identified as an isoprenylated protein.  go_component plasma membrane|GO:0005886|17644812|IDA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||ISS  go_function GTP-dependent protein binding|GO:0030742|18703495|IPI  go_function myosin XI tail binding|GO:0080115|18703495|IPI  product ATFP8; GTP binding / GTP-dependent protein binding / myosin XI tail binding  note ATFP8; FUNCTIONS IN: myosin XI tail binding, GTP binding, GTP-dependent protein binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: ATRAB1A; GTP binding (TAIR:AT5G47200.1); Has 23785 Blast hits to 23733 proteins in 650 species: Archae - 19; Bacteria - 103; Metazoa - 13335; Fungi - 2828; Plants - 2254; Viruses - 19; Other Eukaryotes - 5227 (source: NCBI BLink).  protein_id AT3G11730.1p  transcript_id AT3G11730.1  protein_id AT3G11730.1p  transcript_id AT3G11730.1  
At3g11740	chr3:003712427	0.0	W/3712427-3712636,3712912-3713142,3713246-3713389	AT3G11740.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01750.2); Has 221 Blast hits to 221 proteins in 33 species: Archae - 0; Bacteria - 18; Metazoa - 0; Fungi - 19; Plants - 184; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G11740.1p  transcript_id AT3G11740.1  protein_id AT3G11740.1p  transcript_id AT3G11740.1  
At3g11745	chr3:003714406	0.0	C/3714406-3714511,3714254-3714334,3714129-3714172,3713976-3714017	AT3G11745.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G11745.1p  transcript_id AT3G11745.1  protein_id AT3G11745.1p  transcript_id AT3G11745.1  
At3g11750	chr3:003715856	0.0	C/3715856-3715904,3715369-3715552,3715071-3715278	AT3G11750.1  CDS  go_process folic acid and derivative metabolic process|GO:0006760||IEA  go_function dihydroneopterin aldolase activity|GO:0004150||IEA  go_process folic acid and derivative metabolic process|GO:0006760||ISS  go_function dihydroneopterin aldolase activity|GO:0004150||ISS  product dihydroneopterin aldolase, putative  note dihydroneopterin aldolase, putative; FUNCTIONS IN: dihydroneopterin aldolase activity; INVOLVED IN: folic acid and derivative metabolic process; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Dihydroneopterin aldolase (InterPro:IPR006157), Dihydroneopterin aldolase family (InterPro:IPR006156); BEST Arabidopsis thaliana protein match is: dihydroneopterin aldolase, putative (TAIR:AT5G62980.1); Has 2195 Blast hits to 2195 proteins in 759 species: Archae - 4; Bacteria - 1463; Metazoa - 0; Fungi - 2; Plants - 60; Viruses - 0; Other Eukaryotes - 666 (source: NCBI BLink).  protein_id AT3G11750.1p  transcript_id AT3G11750.1  protein_id AT3G11750.1p  transcript_id AT3G11750.1  
At3g11760	chr3:003718529	0.0	W/3718529-3718864,3719184-3719342,3719430-3720101,3720182-3721123	AT3G11760.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04860.1); Has 43 Blast hits to 38 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G11760.1p  transcript_id AT3G11760.1  protein_id AT3G11760.1p  transcript_id AT3G11760.1  
At3g11770	chr3:003721490	0.0	C/3721490-3722092	AT3G11770.1  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT5G06450.1); Has 77 Blast hits to 77 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 30; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G11770.1p  transcript_id AT3G11770.1  protein_id AT3G11770.1p  transcript_id AT3G11770.1  
At3g11773	chr3:003722989	0.0	C/3722989-3723441	AT3G11773.1  CDS  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  product electron carrier/ protein disulfide oxidoreductase  note electron carrier/ protein disulfide oxidoreductase; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin family protein (TAIR:AT5G06470.1); Has 665 Blast hits to 665 proteins in 186 species: Archae - 0; Bacteria - 253; Metazoa - 95; Fungi - 0; Plants - 196; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).  protein_id AT3G11773.1p  transcript_id AT3G11773.1  protein_id AT3G11773.1p  transcript_id AT3G11773.1  
At3g11780	chr3:003725386	0.0	C/3725386-3725476,3725091-3725192,3724815-3724975,3724326-3724433	AT3G11780.1  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MD-2-related lipid recognition domain-containing protein / ML domain-containing protein  note MD-2-related lipid recognition domain-containing protein / ML domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), MD-2-related lipid-recognition (InterPro:IPR003172); BEST Arabidopsis thaliana protein match is: MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (TAIR:AT5G06480.1); Has 141 Blast hits to 141 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 76; Plants - 53; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT3G11780.1p  transcript_id AT3G11780.1  protein_id AT3G11780.1p  transcript_id AT3G11780.1  
At3g11800	chr3:003726154	0.0	W/3726154-3726474,3727040-3727147,3727251-3727562	AT3G11800.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44150.1); Has 44 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G11800.1p  transcript_id AT3G11800.1  protein_id AT3G11800.1p  transcript_id AT3G11800.1  
At3g11810	chr3:003727819	0.0	W/3727819-3728865	AT3G11810.1  CDS  product unknown protein  note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G03330.1); Has 76 Blast hits to 76 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G11810.1p  transcript_id AT3G11810.1  protein_id AT3G11810.1p  transcript_id AT3G11810.1  
At3g11820	chr3:003730295	0.0	C/3730295-3730775,3729540-3730006	AT3G11820.2  CDS  gene_syn AT-SYR1, ATSYP121, ATSYR1, PEN1, PENETRATION1, SYNTAXIN OF PLANTS 121, SYNTAXIN RELATED PROTEIN 1, SYP121, SYR1  gene SYP121  function Encodes a syntaxin localized at the plasma membrane (SYR1, Syntaxin Related Protein 1, also known as SYP121, PENETRATION1/PEN1). SYR1/PEN1 is a member of the SNARE superfamily proteins. SNARE proteins are involved in cell signaling, vesicle traffic, growth and development. SYR1/PEN1 functions in positioning anchoring of the KAT1 K+ channel protein at the plasma membrane. Transcription is upregulated by abscisic acid, suggesting a role in ABA signaling. Also functions in non-host resistance against barley powdery mildew, Blumeria graminis sp. hordei. SYR1/PEN1 is a nonessential component of the preinvasive resistance against Colletotrichum fungus. Required for mlo resistance.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component plasma membrane|GO:0005886|11115874|TAS  go_component plasma membrane|GO:0005886|11591731|TAS  go_component plasma membrane|GO:0005886|14586469|IDA  go_component plasma membrane|GO:0005886|16935987|IDA  go_component SNARE complex|GO:0031201|14586469|ISS  go_process protein targeting to membrane|GO:0006612|17662029|IDA  go_process intracellular protein transport|GO:0006886|11115874|TAS  go_process membrane fusion|GO:0006944|11115874|TAS  go_process defense response|GO:0006952|16255250|TAS  go_process response to fungus|GO:0009620|15342780|IMP  go_process response to abscisic acid stimulus|GO:0009737|9915701|IEP  go_process salicylic acid mediated signaling pathway|GO:0009863|17241452|IGI  go_process jasmonic acid mediated signaling pathway|GO:0009867|17241452|IGI  go_process regulation of plant-type hypersensitive response|GO:0010363|17241452|IGI  go_process negative regulation of defense response|GO:0031348|16732289|IMP  go_process negative regulation of programmed cell death|GO:0043069|17241452|IGI  go_process defense response to fungus|GO:0050832|15342780|IGI  go_process negative regulation of cellular defense response|GO:0051245|17241452|IGI  go_function SNAP receptor activity|GO:0005484|11115874|TAS  go_function protein anchor|GO:0043495|16531497|IDA  product SYP121 (SYNTAXIN OF PLANTS 121); SNAP receptor/ protein anchor  note SYNTAXIN OF PLANTS 121 (SYP121); FUNCTIONS IN: protein anchor, SNAP receptor activity; INVOLVED IN: in 13 processes; LOCATED IN: SNARE complex, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: SYP122 (SYNTAXIN OF PLANTS 122); SNAP receptor (TAIR:AT3G52400.1); Has 1771 Blast hits to 1763 proteins in 206 species: Archae - 0; Bacteria - 4; Metazoa - 923; Fungi - 320; Plants - 262; Viruses - 0; Other Eukaryotes - 262 (source: NCBI BLink).  protein_id AT3G11820.2p  transcript_id AT3G11820.2  protein_id AT3G11820.2p  transcript_id AT3G11820.2  
At3g11820	chr3:003730295	0.0	C/3730295-3730868,3729540-3730006	AT3G11820.1  CDS  gene_syn AT-SYR1, ATSYP121, ATSYR1, PEN1, PENETRATION1, SYNTAXIN OF PLANTS 121, SYNTAXIN RELATED PROTEIN 1, SYP121, SYR1  gene SYP121  function Encodes a syntaxin localized at the plasma membrane (SYR1, Syntaxin Related Protein 1, also known as SYP121, PENETRATION1/PEN1). SYR1/PEN1 is a member of the SNARE superfamily proteins. SNARE proteins are involved in cell signaling, vesicle traffic, growth and development. SYR1/PEN1 functions in positioning anchoring of the KAT1 K+ channel protein at the plasma membrane. Transcription is upregulated by abscisic acid, suggesting a role in ABA signaling. Also functions in non-host resistance against barley powdery mildew, Blumeria graminis sp. hordei. SYR1/PEN1 is a nonessential component of the preinvasive resistance against Colletotrichum fungus. Required for mlo resistance.  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component plasma membrane|GO:0005886|11115874|TAS  go_component plasma membrane|GO:0005886|11591731|TAS  go_component plasma membrane|GO:0005886|14586469|IDA  go_component plasma membrane|GO:0005886|16935987|IDA  go_component SNARE complex|GO:0031201|14586469|ISS  go_process protein targeting to membrane|GO:0006612|17662029|IDA  go_process intracellular protein transport|GO:0006886|11115874|TAS  go_process membrane fusion|GO:0006944|11115874|TAS  go_process defense response|GO:0006952|16255250|TAS  go_process response to fungus|GO:0009620|15342780|IMP  go_process response to abscisic acid stimulus|GO:0009737|9915701|IEP  go_process salicylic acid mediated signaling pathway|GO:0009863|17241452|IGI  go_process jasmonic acid mediated signaling pathway|GO:0009867|17241452|IGI  go_process regulation of plant-type hypersensitive response|GO:0010363|17241452|IGI  go_process negative regulation of defense response|GO:0031348|16732289|IMP  go_process negative regulation of programmed cell death|GO:0043069|17241452|IGI  go_process defense response to fungus|GO:0050832|15342780|IGI  go_process negative regulation of cellular defense response|GO:0051245|17241452|IGI  go_function SNAP receptor activity|GO:0005484|11115874|TAS  go_function protein anchor|GO:0043495|16531497|IDA  product SYP121 (SYNTAXIN OF PLANTS 121); SNAP receptor/ protein anchor  note SYNTAXIN OF PLANTS 121 (SYP121); FUNCTIONS IN: protein anchor, SNAP receptor activity; INVOLVED IN: in 13 processes; LOCATED IN: SNARE complex, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), t-SNARE (InterPro:IPR010989), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: SYP122 (SYNTAXIN OF PLANTS 122); SNAP receptor (TAIR:AT3G52400.1); Has 1781 Blast hits to 1772 proteins in 208 species: Archae - 0; Bacteria - 4; Metazoa - 928; Fungi - 322; Plants - 263; Viruses - 0; Other Eukaryotes - 264 (source: NCBI BLink).  protein_id AT3G11820.1p  transcript_id AT3G11820.1  protein_id AT3G11820.1p  transcript_id AT3G11820.1  
At3g11825	chr3:003731762	0.0	W/3731762-3732064	AT3G11825.1  CDS  function Encodes a Protease inhibitor/seed storage/LTP family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G59455.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G11825.1p  transcript_id AT3G11825.1  protein_id AT3G11825.1p  transcript_id AT3G11825.1  
At3g11830	chr3:003732734	0.0	W/3732734-3732748,3732845-3733105,3733303-3733428,3733519-3733722,3733804-3733973,3734063-3734198,3734571-3734687,3734795-3734914,3734994-3735092,3735168-3735257,3735516-3735603,3735693-3735781,3735917-3735991,3736073-3736156	AT3G11830.1  CDS  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  product chaperonin, putative  note chaperonin, putative; FUNCTIONS IN: unfolded protein binding, protein binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, eta subunit (InterPro:IPR012720), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: ATTCP-1; ATP binding / protein binding / unfolded protein binding (TAIR:AT3G20050.1); Has 14866 Blast hits to 14802 proteins in 2423 species: Archae - 394; Bacteria - 5781; Metazoa - 1895; Fungi - 1006; Plants - 468; Viruses - 0; Other Eukaryotes - 5322 (source: NCBI BLink).  protein_id AT3G11830.1p  transcript_id AT3G11830.1  protein_id AT3G11830.1p  transcript_id AT3G11830.1  
At3g11840	chr3:003737869	0.0	C/3737869-3738250,3736578-3737608	AT3G11840.1  CDS  gene_syn PLANT U-BOX 24, PUB24  gene PUB24  function Encodes a U-box-domain-containing E3 ubiquitin ligase that acts as a negative regulator of PAMP-triggered immunity.  go_component ubiquitin ligase complex|GO:0000151||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  go_process respiratory burst during defense response|GO:0002679|18771922|IGI  go_process defense response|GO:0006952|18771922|IGI  go_process response to chitin|GO:0010200|17722694|IEP  go_process protein autoubiquitination|GO:0051865|18771922|IDA  product PUB24 (PLANT U-BOX 24); binding / ubiquitin-protein ligase  note PLANT U-BOX 24 (PUB24); FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: respiratory burst during defense response, protein autoubiquitination, response to chitin, defense response; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: PUB23 (PLANT U-BOX 23); ubiquitin-protein ligase (TAIR:AT2G35930.1); Has 1433 Blast hits to 1415 proteins in 143 species: Archae - 0; Bacteria - 20; Metazoa - 243; Fungi - 80; Plants - 912; Viruses - 3; Other Eukaryotes - 175 (source: NCBI BLink).  protein_id AT3G11840.1p  transcript_id AT3G11840.1  protein_id AT3G11840.1p  transcript_id AT3G11840.1  
At3g11850	chr3:003739737	0.0	C/3739737-3741101,3739576-3739622,3739222-3739324	AT3G11850.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06560.1); Has 433 Blast hits to 399 proteins in 67 species: Archae - 2; Bacteria - 8; Metazoa - 106; Fungi - 12; Plants - 193; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).  protein_id AT3G11850.1p  transcript_id AT3G11850.1  protein_id AT3G11850.1p  transcript_id AT3G11850.1  
At3g11850	chr3:003739737	0.0	C/3739737-3741101,3739576-3739622,3739222-3739324	AT3G11850.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06560.1); Has 433 Blast hits to 399 proteins in 67 species: Archae - 2; Bacteria - 8; Metazoa - 106; Fungi - 12; Plants - 193; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).  protein_id AT3G11850.2p  transcript_id AT3G11850.2  protein_id AT3G11850.2p  transcript_id AT3G11850.2  
At3g11860	chr3:003744816	0.0	W/3744816-3744905,3746131-3746475,3746527-3746850	AT3G11860.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11890.2); Has 34 Blast hits to 10 proteins in 2 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G11860.1p  transcript_id AT3G11860.1  protein_id AT3G11860.1p  transcript_id AT3G11860.1  
At3g11870	chr3:003748336	0.0	C/3748336-3749093,3748065-3748240,3747687-3747939,3747257-3747599,3746998-3747132	AT3G11870.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process mRNA processing|GO:0006397||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_function endoribonuclease activity, producing 5 -phosphomonoesters|GO:0016891||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase-related  note protein kinase-related; FUNCTIONS IN: endoribonuclease activity, producing 5 -phosphomonoesters, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, mRNA processing; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Ribonuclease L (InterPro:IPR010513), PUG (InterPro:IPR006567), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: IRE1A; endoribonuclease/ kinase (TAIR:AT2G17520.1); Has 32270 Blast hits to 31978 proteins in 1244 species: Archae - 33; Bacteria - 2578; Metazoa - 14666; Fungi - 2801; Plants - 4664; Viruses - 76; Other Eukaryotes - 7452 (source: NCBI BLink).  protein_id AT3G11870.1p  transcript_id AT3G11870.1  protein_id AT3G11870.1p  transcript_id AT3G11870.1  
At3g11880	chr3:003751697	0.0	W/3751697-3751780,3751880-3752191,3752331-3752465,3752565-3752701,3752771-3752903,3752977-3753106,3753195-3753421,3753549-3753722	AT3G11880.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70770.1); Has 64 Blast hits to 63 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 38; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G11880.1p  transcript_id AT3G11880.1  protein_id AT3G11880.1p  transcript_id AT3G11880.1  
At3g11890	chr3:003756026	0.0	W/3756026-3757006,3757088-3757609	AT3G11890.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Sterile alpha motif SAM (InterPro:IPR001660), Sterile alpha motif homology (InterPro:IPR010993), Sterile alpha motif homology 2 (InterPro:IPR011510); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11860.1); Has 783 Blast hits to 462 proteins in 96 species: Archae - 0; Bacteria - 25; Metazoa - 378; Fungi - 104; Plants - 31; Viruses - 9; Other Eukaryotes - 236 (source: NCBI BLink).  protein_id AT3G11890.1p  transcript_id AT3G11890.1  protein_id AT3G11890.1p  transcript_id AT3G11890.1  
At3g11890	chr3:003756026	0.0	W/3756026-3757609	AT3G11890.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Sterile alpha motif SAM (InterPro:IPR001660), Sterile alpha motif homology (InterPro:IPR010993), Sterile alpha motif homology 2 (InterPro:IPR011510); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11860.1); Has 789 Blast hits to 453 proteins in 90 species: Archae - 0; Bacteria - 10; Metazoa - 495; Fungi - 83; Plants - 33; Viruses - 5; Other Eukaryotes - 163 (source: NCBI BLink).  protein_id AT3G11890.2p  transcript_id AT3G11890.2  protein_id AT3G11890.2p  transcript_id AT3G11890.2  
At3g11900	chr3:003758523	0.0	W/3758523-3758768,3758869-3759516,3759699-3760103	AT3G11900.1  CDS  gene_syn ANT1, AROMATIC AND NEUTRAL TRANSPORTER 1  gene ANT1  function encodes an amino acid transporter that transports aromatic and neutral amino acids, IAA, and 2,4-D. Expressed in all tissues with highest abundance in flowers and cauline leaves. a member of a small gene family in Arabidopsis and represents a new class of amino acid transporters.  go_component membrane|GO:0016020|11299361|ISS  go_process amino acid transport|GO:0006865||ISS  go_process response to nematode|GO:0009624|16478044|IEP  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  go_function aromatic amino acid transmembrane transporter activity|GO:0015173|11299361|IMP  go_function neutral amino acid transmembrane transporter activity|GO:0015175|11299361|IMP  product ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1); amino acid transmembrane transporter/ aromatic amino acid transmembrane transporter/ neutral amino acid transmembrane transporter  note AROMATIC AND NEUTRAL TRANSPORTER 1 (ANT1); FUNCTIONS IN: neutral amino acid transmembrane transporter activity, amino acid transmembrane transporter activity, aromatic amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport, response to nematode; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid transporter family protein (TAIR:AT4G38250.1); Has 3307 Blast hits to 3285 proteins in 206 species: Archae - 9; Bacteria - 47; Metazoa - 1466; Fungi - 501; Plants - 695; Viruses - 8; Other Eukaryotes - 581 (source: NCBI BLink).  protein_id AT3G11900.1p  transcript_id AT3G11900.1  protein_id AT3G11900.1p  transcript_id AT3G11900.1  
At3g11910	chr3:003770261	0.0	C/3770261-3770290,3769925-3769991,3769575-3769725,3769315-3769472,3768731-3768996,3768411-3768629,3768225-3768333,3768001-3768116,3767615-3767713,3767413-3767522,3767064-3767138,3766606-3766684,3766376-3766522,3766218-3766298,3766008-3766127,3765601-3765723,3765110-3765187,3764926-3765014,3764671-3764779,3764513-3764581,3764328-3764435,3763983-3764038,3763734-3763911,3763536-3763637,3763377-3763448,3763132-3763197,3762912-3762977,3762468-3762551,3762258-3762374,3762046-3762120,3761879-3761965,3761758-3761799	AT3G11910.1  CDS  gene_syn UBIQUITIN-SPECIFIC PROTEASE 13, UBP13  gene UBP13  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_component cellular_component|GO:0005575||ND  go_function ubiquitin-specific protease activity|GO:0004843||ISS  product UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13); ubiquitin thiolesterase/ ubiquitin-specific protease  note UBIQUITIN-SPECIFIC PROTEASE 13 (UBP13); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), MATH (InterPro:IPR002083), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12); ubiquitin thiolesterase/ ubiquitin-specific protease (TAIR:AT5G06600.1); Has 5914 Blast hits to 5327 proteins in 200 species: Archae - 0; Bacteria - 15; Metazoa - 3076; Fungi - 783; Plants - 832; Viruses - 7; Other Eukaryotes - 1201 (source: NCBI BLink).  protein_id AT3G11910.1p  transcript_id AT3G11910.1  protein_id AT3G11910.1p  transcript_id AT3G11910.1  
At3g11920	chr3:003772311	0.0	W/3772311-3773267,3773512-3773567,3773670-3773900,3774006-3774300,3774392-3774588,3774731-3774887	AT3G11920.1  CDS  gene_syn F26K24.21  go_process intracellular signaling cascade|GO:0007242||IEA  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  go_component cellular_component|GO:0005575||ND  product glutaredoxin-related  note glutaredoxin-related; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: intracellular signaling cascade, cell redox homeostasis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336), Pleckstrin/G-protein, interacting region (InterPro:IPR000591), Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: electron carrier/ protein disulfide oxidoreductase (TAIR:AT4G08550.1); Has 2002 Blast hits to 1968 proteins in 488 species: Archae - 0; Bacteria - 869; Metazoa - 299; Fungi - 23; Plants - 222; Viruses - 0; Other Eukaryotes - 589 (source: NCBI BLink).  protein_id AT3G11920.1p  transcript_id AT3G11920.1  protein_id AT3G11920.1p  transcript_id AT3G11920.1  
At3g11930	chr3:003776371	0.0	W/3776371-3776659,3776910-3777016,3777106-3777224,3777303-3777393	AT3G11930.4  CDS  go_process response to stress|GO:0006950||IEA  go_component cellular_component|GO:0005575||ND  go_process response to stress|GO:0006950||ISS  go_function molecular_function|GO:0003674||ND  product universal stress protein (USP) family protein  note universal stress protein (USP) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: universal stress protein (USP) family protein (TAIR:AT3G58450.1); Has 2794 Blast hits to 2685 proteins in 578 species: Archae - 205; Bacteria - 1923; Metazoa - 49; Fungi - 70; Plants - 414; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).  protein_id AT3G11930.4p  transcript_id AT3G11930.4  protein_id AT3G11930.4p  transcript_id AT3G11930.4  
At3g11930	chr3:003776371	0.0	W/3776371-3776659,3776913-3777016,3777106-3777224,3777303-3777393	AT3G11930.2  CDS  go_process response to stress|GO:0006950||IEA  go_component cellular_component|GO:0005575||ND  go_process response to stress|GO:0006950||ISS  go_function molecular_function|GO:0003674||ND  product universal stress protein (USP) family protein  note universal stress protein (USP) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: universal stress protein (USP) family protein (TAIR:AT3G58450.1); Has 2813 Blast hits to 2702 proteins in 587 species: Archae - 203; Bacteria - 1935; Metazoa - 49; Fungi - 70; Plants - 417; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).  protein_id AT3G11930.2p  transcript_id AT3G11930.2  protein_id AT3G11930.2p  transcript_id AT3G11930.2  
At3g11930	chr3:003776371	0.0	W/3776371-3776659,3776913-3777016,3777106-3777393	AT3G11930.3  CDS  go_process response to stress|GO:0006950||IEA  go_component cellular_component|GO:0005575||ND  go_process response to stress|GO:0006950||ISS  go_function molecular_function|GO:0003674||ND  product universal stress protein (USP) family protein  note universal stress protein (USP) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: universal stress protein (USP) family protein (TAIR:AT3G58450.1); Has 734 Blast hits to 733 proteins in 134 species: Archae - 26; Bacteria - 262; Metazoa - 38; Fungi - 0; Plants - 389; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT3G11930.3p  transcript_id AT3G11930.3  protein_id AT3G11930.3p  transcript_id AT3G11930.3  
At3g11930	chr3:003776371	0.0	W/3776371-3776659,3776916-3777016,3777106-3777224,3777303-3777393	AT3G11930.1  CDS  go_process response to stress|GO:0006950||IEA  go_component cellular_component|GO:0005575||ND  go_process response to stress|GO:0006950||ISS  go_function molecular_function|GO:0003674||ND  product universal stress protein (USP) family protein  note universal stress protein (USP) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: universal stress protein (USP) family protein (TAIR:AT3G58450.1); Has 2891 Blast hits to 2779 proteins in 594 species: Archae - 203; Bacteria - 2009; Metazoa - 49; Fungi - 70; Plants - 416; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).  protein_id AT3G11930.1p  transcript_id AT3G11930.1  protein_id AT3G11930.1p  transcript_id AT3G11930.1  
At3g11940	chr3:003779262	0.0	C/3779262-3779354,3778603-3778874,3778310-3778513,3778175-3778229	AT3G11940.1  CDS  gene_syn AML1, ARABIDOPSIS MINUTE-LIKE 1, ATRPS5A, MEC18.11, RIBOSOMAL PROTEIN 5A  gene ATRPS5A  function One of two genes encoding the ribosomal protein S5. Mutants have semi-dominant developmental phenotypes. Most cell-division processes are delayed or disturbed in the heterozygous mutant, and development is completely arrested at an early embryonic stage in the homozygous mutant.  go_component cell wall|GO:0005618|16287169|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_process translation|GO:0006412|11598216|ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ATRPS5A (RIBOSOMAL PROTEIN 5A); structural constituent of ribosome  note RIBOSOMAL PROTEIN 5A (ATRPS5A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Ribosomal protein S7, eukaryotic/archaeal (InterPro:IPR005716), Ribosomal protein S7 (InterPro:IPR000235); BEST Arabidopsis thaliana protein match is: ATRPS5B (RIBOSOMAL PROTEIN 5B); structural constituent of ribosome (TAIR:AT2G37270.2); Has 5622 Blast hits to 5622 proteins in 1912 species: Archae - 177; Bacteria - 2550; Metazoa - 351; Fungi - 119; Plants - 931; Viruses - 0; Other Eukaryotes - 1494 (source: NCBI BLink).  protein_id AT3G11940.1p  transcript_id AT3G11940.1  protein_id AT3G11940.1p  transcript_id AT3G11940.1  
At3g11940	chr3:003779262	0.0	C/3779262-3779354,3778603-3778874,3778310-3778513,3778175-3778229	AT3G11940.2  CDS  gene_syn AML1, ARABIDOPSIS MINUTE-LIKE 1, ATRPS5A, MEC18.11, RIBOSOMAL PROTEIN 5A  gene ATRPS5A  function One of two genes encoding the ribosomal protein S5. Mutants have semi-dominant developmental phenotypes. Most cell-division processes are delayed or disturbed in the heterozygous mutant, and development is completely arrested at an early embryonic stage in the homozygous mutant.  go_component cell wall|GO:0005618|16287169|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_process translation|GO:0006412|11598216|ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ATRPS5A (RIBOSOMAL PROTEIN 5A); structural constituent of ribosome  note RIBOSOMAL PROTEIN 5A (ATRPS5A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Ribosomal protein S7, eukaryotic/archaeal (InterPro:IPR005716), Ribosomal protein S7 (InterPro:IPR000235); BEST Arabidopsis thaliana protein match is: ATRPS5B (RIBOSOMAL PROTEIN 5B); structural constituent of ribosome (TAIR:AT2G37270.2); Has 5622 Blast hits to 5622 proteins in 1912 species: Archae - 177; Bacteria - 2550; Metazoa - 351; Fungi - 119; Plants - 931; Viruses - 0; Other Eukaryotes - 1494 (source: NCBI BLink).  protein_id AT3G11940.2p  transcript_id AT3G11940.2  protein_id AT3G11940.2p  transcript_id AT3G11940.2  
At3g11945	chr3:003782674	0.0	C/3782674-3782880,3782141-3782265,3781911-3782057,3781392-3781617,3781207-3781280,3780896-3780988,3780622-3780739,3780384-3780446,3780208-3780240,3780041-3780115	AT3G11945.1  CDS  gene_syn ARABIDOPSIS THALIANA HOMOGENTISATE PRENYLTRANSFERASE, ATHST  gene ATHST  function Encodes a protein involved in plastoquinone-9 biosynthesis. The enzyme possesses homogentisate prenyltransferase activity and was shown to use solanesyl diphosphate, farnesyl diphosphate and geranylgeranyldiphosphate as prenyl donors, but not phytyldiphosphate. This gene At3g11945 derives from a split of At3g11950, publications Tian et al (2007) and Sadre et al (2006) refer to this gene as At3g11950.  go_component chloroplast|GO:0009507||IEA  go_component integral to membrane|GO:0016021||IEA  go_process plastoquinone biosynthetic process|GO:0010236|16989822|IMP  go_function homogentisate farnesyltransferase activity|GO:0010355|16989822|IDA  go_function homogentisate geranylgeranyltransferase activity|GO:0010356|16989822|IDA  go_function homogentisate solanesyltransferase activity|GO:0010357|16989822|IDA  product homogentisate farnesyltransferase/ homogentisate geranylgeranyltransferase/ homogentisate solanesyltransferase  note ARABIDOPSIS THALIANA HOMOGENTISATE PRENYLTRANSFERASE (ATHST); FUNCTIONS IN: homogentisate geranylgeranyltransferase activity, homogentisate farnesyltransferase activity, homogentisate solanesyltransferase activity; INVOLVED IN: plastoquinone biosynthetic process; LOCATED IN: integral to membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UbiA prenyltransferase (InterPro:IPR000537); BEST Arabidopsis thaliana protein match is: HPT1 (HOMOGENTISATE PHYTYLTRANSFERASE 1); homogentisate phytyltransferase/ prenyltransferase (TAIR:AT2G18950.1); Has 1075 Blast hits to 1074 proteins in 269 species: Archae - 170; Bacteria - 502; Metazoa - 0; Fungi - 2; Plants - 101; Viruses - 0; Other Eukaryotes - 300 (source: NCBI BLink).  protein_id AT3G11945.1p  transcript_id AT3G11945.1  protein_id AT3G11945.1p  transcript_id AT3G11945.1  
At3g11945	chr3:003782717	0.0	C/3782717-3782880,3782560-3782635,3782141-3782253,3781911-3782057,3781392-3781617,3781207-3781280,3780896-3780988,3780622-3780739,3780384-3780446,3780208-3780240,3780041-3780115	AT3G11945.2  CDS  gene_syn ARABIDOPSIS THALIANA HOMOGENTISATE PRENYLTRANSFERASE, ATHST  gene ATHST  function Encodes a protein involved in plastoquinone-9 biosynthesis. The enzyme possesses homogentisate prenyltransferase activity and was shown to use solanesyl diphosphate, farnesyl diphosphate and geranylgeranyldiphosphate as prenyl donors, but not phytyldiphosphate. This gene At3g11945 derives from a split of At3g11950, publications Tian et al (2007) and Sadre et al (2006) refer to this gene as At3g11950.  go_component chloroplast|GO:0009507||IEA  go_component integral to membrane|GO:0016021||IEA  go_process plastoquinone biosynthetic process|GO:0010236|16989822|IMP  go_function homogentisate farnesyltransferase activity|GO:0010355|16989822|IDA  go_function homogentisate geranylgeranyltransferase activity|GO:0010356|16989822|IDA  go_function homogentisate solanesyltransferase activity|GO:0010357|16989822|IDA  product homogentisate farnesyltransferase/ homogentisate geranylgeranyltransferase/ homogentisate solanesyltransferase  note ARABIDOPSIS THALIANA HOMOGENTISATE PRENYLTRANSFERASE (ATHST); FUNCTIONS IN: homogentisate geranylgeranyltransferase activity, homogentisate farnesyltransferase activity, homogentisate solanesyltransferase activity; INVOLVED IN: plastoquinone biosynthetic process; LOCATED IN: integral to membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UbiA prenyltransferase (InterPro:IPR000537); BEST Arabidopsis thaliana protein match is: HPT1 (HOMOGENTISATE PHYTYLTRANSFERASE 1); homogentisate phytyltransferase/ prenyltransferase (TAIR:AT2G18950.1).  protein_id AT3G11945.2p  transcript_id AT3G11945.2  protein_id AT3G11945.2p  transcript_id AT3G11945.2  
At3g11950	chr3:003784187	0.0	C/3784187-3785098,3783273-3784079	AT3G11950.1  CDS  function publications Tian et al (2007) and Sadre et al (2006) refer to At3g11950. The prenyltransferase gene studied is actually At3g11945 which arises from a split of the previous At3g11950 gene model.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_function zinc ion binding|GO:0008270||IEA  go_function prenyltransferase activity|GO:0004659||ISS  product prenyltransferase/ zinc ion binding  note prenyltransferase/ zinc ion binding; FUNCTIONS IN: prenyltransferase activity, zinc ion binding; LOCATED IN: chloroplast, chloroplast envelope; CONTAINS InterPro DOMAIN/s: Zinc finger, TRAF-type (InterPro:IPR001293), TRAF-like (InterPro:IPR008974); Has 13340 Blast hits to 8482 proteins in 725 species: Archae - 73; Bacteria - 1391; Metazoa - 5260; Fungi - 1152; Plants - 479; Viruses - 107; Other Eukaryotes - 4878 (source: NCBI BLink).  protein_id AT3G11950.1p  transcript_id AT3G11950.1  protein_id AT3G11950.1p  transcript_id AT3G11950.1  
At3g11960	chr3:003786431	0.0	W/3786431-3786631,3787002-3787136,3787303-3787379,3787456-3787539,3787800-3787887,3788014-3788156,3788236-3790183,3790434-3790741,3790855-3791170,3791255-3791410,3791531-3791690,3791913-3791989,3792324-3792460,3792656-3792764,3792960-3793160	AT3G11960.1  CDS  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component nucleus|GO:0005634||ISS  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product cleavage and polyadenylation specificity factor (CPSF) A subunit C-terminal domain-containing protein  note cleavage and polyadenylation specificity factor (CPSF) A subunit C-terminal domain-containing protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cleavage and polyadenylation specificity factor, A subunit, C-terminal (InterPro:IPR004871); BEST Arabidopsis thaliana protein match is: DDB1A (DAMAGED DNA BINDING PROTEIN 1A); DNA binding / protein binding (TAIR:AT4G05420.2); Has 739 Blast hits to 542 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 277; Fungi - 187; Plants - 144; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).  protein_id AT3G11960.1p  transcript_id AT3G11960.1  protein_id AT3G11960.1p  transcript_id AT3G11960.1  
At3g11960	chr3:003786431	0.0	W/3786431-3786631,3787002-3787136,3787303-3787379,3788016-3788156,3788236-3790183,3790434-3790741,3790855-3791170,3791255-3791410,3791531-3791690,3791889-3791989,3792324-3792460,3792656-3792764,3792960-3793160	AT3G11960.2  CDS  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component nucleus|GO:0005634||ISS  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product cleavage and polyadenylation specificity factor (CPSF) A subunit C-terminal domain-containing protein  note cleavage and polyadenylation specificity factor (CPSF) A subunit C-terminal domain-containing protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cleavage and polyadenylation specificity factor, A subunit, C-terminal (InterPro:IPR004871); BEST Arabidopsis thaliana protein match is: DDB1A (DAMAGED DNA BINDING PROTEIN 1A); DNA binding / protein binding (TAIR:AT4G05420.2); Has 656 Blast hits to 537 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 268; Fungi - 153; Plants - 127; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT3G11960.2p  transcript_id AT3G11960.2  protein_id AT3G11960.2p  transcript_id AT3G11960.2  
At3g11964	chr3:003806467	0.0	C/3806467-3806626,3806077-3806285,3805433-3805570,3805143-3805316,3804677-3804773,3804313-3804431,3804098-3804220,3803910-3803981,3803170-3803262,3802802-3802912,3802594-3802671,3802203-3802388,3802049-3802123,3801477-3801613,3801195-3801307,3800931-3801065,3800785-3800850,3800349-3800455,3800178-3800258,3800016-3800090,3799832-3799933,3799473-3799641,3799221-3799363,3799008-3799091,3798834-3798934,3798439-3798592,3798258-3798338,3798014-3798161,3797010-3797664,3796712-3796772,3796487-3796632,3796229-3796412,3795995-3796093,3795443-3795804,3795192-3795368,3794892-3794988,3794643-3794798,3794320-3794550,3794155-3794238,3793957-3794064	AT3G11964.1  CDS  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|14506206|IDA  go_process RNA processing|GO:0006396||IEA  go_process mRNA processing|GO:0006397||IEA  go_function RNA binding|GO:0003723||IEA  go_function RNA binding|GO:0003723||ISS  product RNA binding  note RNA binding; FUNCTIONS IN: RNA binding; INVOLVED IN: mRNA processing, RNA processing; LOCATED IN: nucleolus, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), RNA-processing protein, HAT helix (InterPro:IPR003107), S1, RNA binding (InterPro:IPR003029), Suppressor of forked (InterPro:IPR008847); BEST Arabidopsis thaliana protein match is: RPS1 (RIBOSOMAL PROTEIN S1); RNA binding / structural constituent of ribosome (TAIR:AT5G30510.1); Has 25753 Blast hits to 12146 proteins in 1575 species: Archae - 87; Bacteria - 16425; Metazoa - 1046; Fungi - 647; Plants - 394; Viruses - 0; Other Eukaryotes - 7154 (source: NCBI BLink).  protein_id AT3G11964.1p  transcript_id AT3G11964.1  protein_id AT3G11964.1p  transcript_id AT3G11964.1  
At3g11970	chr3:003807727	0.0	C/3807727-3812227	AT3G11970.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.5e-201 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At3g11980	chr3:003814484	0.0	W/3814484-3814916,3815001-3815104,3815182-3815381,3815473-3815573,3815643-3815844,3815919-3816080,3816187-3816678,3816771-3816927	AT3G11980.1  CDS  gene_syn FAR2, FATTY ACID REDUCTASE 2, MALE STERILITY 2, MALE STERILITY PROTEIN 2, MEC18.1, MS2  gene MS2  function Similar to fatty acid reductases.  go_component chloroplast|GO:0009507||IEA  go_process microsporogenesis|GO:0009556|9351246|IMP  go_process pollen exine formation|GO:0010584||IMP  go_function oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor|GO:0016628|9351246|ISS  go_function fatty acyl-CoA reductase (alcohol-forming) activity|GO:0080019|19062129|IDA  product MS2 (MALE STERILITY 2); fatty acyl-CoA reductase (alcohol-forming)/ oxidoreductase, acting on the CH-CH group of donors, NAD or NADP as acceptor  note MALE STERILITY 2 (MS2); FUNCTIONS IN: fatty acyl-CoA reductase (alcohol-forming) activity, oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor; INVOLVED IN: microsporogenesis, pollen exine formation; LOCATED IN: chloroplast; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Male sterility (InterPro:IPR004262), NAD(P)-binding (InterPro:IPR016040), Male sterility, NAD-binding (InterPro:IPR013120); BEST Arabidopsis thaliana protein match is: FAR6 (FATTY ACID REDUCTASE 6); fatty acyl-CoA reductase (alcohol-forming)/ oxidoreductase, acting on the CH-CH group of donors, NAD or NADP as acceptor (TAIR:AT3G56700.1); Has 1669 Blast hits to 1643 proteins in 274 species: Archae - 0; Bacteria - 338; Metazoa - 854; Fungi - 182; Plants - 138; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).  protein_id AT3G11980.1p  transcript_id AT3G11980.1  protein_id AT3G11980.1p  transcript_id AT3G11980.1  
At3g11990	chr3:003817348	0.0	W/3817348-3817866	AT3G11990.1  CDS  gene_syn MEC18.12  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G45190.1); Has 44 Blast hits to 44 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G11990.1p  transcript_id AT3G11990.1  protein_id AT3G11990.1p  transcript_id AT3G11990.1  
At3g12000	chr3:003818301	0.0	C/3818301-3819620	AT3G12000.1  CDS  gene_syn MEC18.8  go_component endomembrane system|GO:0012505||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function sugar binding|GO:0005529||IEA  go_function sugar binding|GO:0005529||ISS  product S-locus related protein SLR1, putative (S1)  note S-locus related protein SLR1, putative (S1); FUNCTIONS IN: sugar binding; INVOLVED IN: recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-like, type 2 (InterPro:IPR013227), Apple-like (InterPro:IPR003609), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: ARK3 (A. THALIANA RECEPTOR KINASE 3); kinase/ transmembrane receptor protein serine/threonine kinase (TAIR:AT4G21380.1); Has 1765 Blast hits to 1706 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1764; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G12000.1p  transcript_id AT3G12000.1  protein_id AT3G12000.1p  transcript_id AT3G12000.1  
At3g12012	chr3:003820787	0.0	W/3820787-3820852,3821061-3821162,3821259-3821276	AT3G12012.1  CDS  gene_syn CPuORF20, Conserved peptide upstream open reading frame 20  gene CPuORF20  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF20 represents a conserved upstream opening reading frame relative to major ORF AT3G12010.1  product CPuORF20 (Conserved peptide upstream open reading frame 20)  note Conserved peptide upstream open reading frame 20 (CPuORF20); Has 14 Blast hits to 14 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 7; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G12012.1p  transcript_id AT3G12012.1  protein_id AT3G12012.1p  transcript_id AT3G12012.1  
At3g12010	chr3:003821337	0.0	W/3821337-3821338,3821528-3821675,3821792-3822051,3822433-3822586,3822776-3822885,3822979-3823066,3823402-3823731,3823819-3823893,3824272-3824455,3824560-3824791,3824913-3825021,3825105-3825284,3825361-3825537	AT3G12010.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell, cultured cell; CONTAINS InterPro DOMAIN/s: Colon cancer-associated Mic1-like (InterPro:IPR009755); Has 126 Blast hits to 120 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 93; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT3G12010.1p  transcript_id AT3G12010.1  protein_id AT3G12010.1p  transcript_id AT3G12010.1  
At3g12020	chr3:003827016	0.0	W/3827016-3827254,3827340-3827437,3827688-3827777,3828087-3828139,3828341-3828406,3828483-3828536,3828671-3828730,3829103-3829181,3829502-3829569,3829941-3830003,3830129-3830233,3830637-3830741,3830856-3830963,3831044-3831190,3831469-3831651,3831804-3831959,3832203-3832406,3832484-3832624,3832713-3832838,3832921-3833166,3833209-3833256,3833375-3833452,3833571-3834146	AT3G12020.1  CDS  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product kinesin motor protein-related  note kinesin motor protein-related; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATP binding / microtubule motor (TAIR:AT5G06670.1); Has 33114 Blast hits to 22100 proteins in 976 species: Archae - 220; Bacteria - 1972; Metazoa - 17477; Fungi - 2773; Plants - 1578; Viruses - 63; Other Eukaryotes - 9031 (source: NCBI BLink).  protein_id AT3G12020.1p  transcript_id AT3G12020.1  protein_id AT3G12020.1p  transcript_id AT3G12020.1  
At3g12030	chr3:003834465	0.0	C/3834465-3835055	AT3G12030.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF841, eukaryotic (InterPro:IPR008559); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06660.1); Has 193 Blast hits to 193 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 124; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT3G12030.1p  transcript_id AT3G12030.1  protein_id AT3G12030.1p  transcript_id AT3G12030.1  
At3g12040	chr3:003836509	0.0	C/3836509-3836781,3836250-3836321,3836042-3836165,3835816-3835886,3835610-3835667,3835349-3835515	AT3G12040.1  CDS  gene_syn MEC18.4  go_process base-excision repair|GO:0006284||IEA  go_function DNA binding|GO:0003677||IEA  go_function catalytic activity|GO:0003824||IEA  go_function alkylbase DNA N-glycosylase activity|GO:0003905||IEA  go_component cellular_component|GO:0005575||ND  go_process base-excision repair|GO:0006284||ISS  go_function DNA binding|GO:0003677||ISS  go_function alkylbase DNA N-glycosylase activity|GO:0003905||ISS  product DNA-3-methyladenine glycosylase (MAG)  note DNA-3-methyladenine glycosylase (MAG); FUNCTIONS IN: DNA binding, alkylbase DNA N-glycosylase activity, catalytic activity; INVOLVED IN: base-excision repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Methylpurine-DNA glycosylase (MPG) (InterPro:IPR003180), Formyl transferase, C-terminal-like (InterPro:IPR011034); Has 1387 Blast hits to 1387 proteins in 556 species: Archae - 20; Bacteria - 1032; Metazoa - 74; Fungi - 5; Plants - 15; Viruses - 0; Other Eukaryotes - 241 (source: NCBI BLink).  protein_id AT3G12040.1p  transcript_id AT3G12040.1  protein_id AT3G12040.1p  transcript_id AT3G12040.1  
At3g12050	chr3:003839289	0.0	W/3839289-3839448,3839566-3840197,3840290-3840369,3841210-3841303	AT3G12050.2  CDS  gene_syn MEC18.18  go_component cytoplasm|GO:0005737||IEA  go_process response to stress|GO:0006950||IEA  go_function ATPase activator activity|GO:0001671||IEA  go_function chaperone binding|GO:0051087||IEA  product Aha1 domain-containing protein  note Aha1 domain-containing protein; FUNCTIONS IN: ATPase activator activity, chaperone binding; INVOLVED IN: response to stress; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Activator of Hsp90 ATPase, N-terminal (InterPro:IPR015310), Activator of Hsp90 ATPase homologue 1-like (InterPro:IPR013538); Has 367 Blast hits to 365 proteins in 144 species: Archae - 0; Bacteria - 12; Metazoa - 183; Fungi - 94; Plants - 33; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT3G12050.2p  transcript_id AT3G12050.2  protein_id AT3G12050.2p  transcript_id AT3G12050.2  
At3g12050	chr3:003839289	0.0	W/3839289-3840197,3840290-3840369,3841210-3841303	AT3G12050.1  CDS  gene_syn MEC18.18  go_component cytoplasm|GO:0005737||IEA  go_process response to stress|GO:0006950||IEA  go_function ATPase activator activity|GO:0001671||IEA  go_function chaperone binding|GO:0051087||IEA  product Aha1 domain-containing protein  note Aha1 domain-containing protein; FUNCTIONS IN: ATPase activator activity, chaperone binding; INVOLVED IN: response to stress; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Activator of Hsp90 ATPase, N-terminal (InterPro:IPR015310), Activator of Hsp90 ATPase homologue 1-like (InterPro:IPR013538); Has 442 Blast hits to 425 proteins in 153 species: Archae - 0; Bacteria - 12; Metazoa - 186; Fungi - 121; Plants - 37; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT3G12050.1p  transcript_id AT3G12050.1  protein_id AT3G12050.1p  transcript_id AT3G12050.1  
At3g12060	chr3:003843142	0.0	W/3843142-3843890,3843992-3844184,3844263-3844456,3844536-3844694,3844775-3845150	AT3G12060.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06700.1); Has 714 Blast hits to 702 proteins in 18 species: Archae - 0; Bacteria - 3; Metazoa - 1; Fungi - 0; Plants - 710; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G12060.1p  transcript_id AT3G12060.1  protein_id AT3G12060.1p  transcript_id AT3G12060.1  
At3g12070	chr3:003847078	0.0	C/3847078-3847140,3846804-3846954,3846594-3846710,3846425-3846491,3846198-3846346,3845933-3846069,3845758-3845856,3845598-3845673,3845420-3845514	AT3G12070.1  CDS  go_function catalytic activity|GO:0003824||IEA  product geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative  note geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative; FUNCTIONS IN: catalytic activity; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative (TAIR:AT5G12210.1); Has 1147 Blast hits to 1009 proteins in 184 species: Archae - 0; Bacteria - 22; Metazoa - 467; Fungi - 295; Plants - 126; Viruses - 0; Other Eukaryotes - 237 (source: NCBI BLink).  protein_id AT3G12070.1p  transcript_id AT3G12070.1  protein_id AT3G12070.1p  transcript_id AT3G12070.1  
At3g12070	chr3:003847078	0.0	C/3847078-3847140,3846804-3846954,3846594-3846710,3846425-3846491,3846198-3846346,3845933-3846069,3845758-3845856,3845598-3845673,3845420-3845514	AT3G12070.2  CDS  go_function catalytic activity|GO:0003824||IEA  product geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative  note geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative; FUNCTIONS IN: catalytic activity; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative (TAIR:AT5G12210.1); Has 1147 Blast hits to 1009 proteins in 184 species: Archae - 0; Bacteria - 22; Metazoa - 467; Fungi - 295; Plants - 126; Viruses - 0; Other Eukaryotes - 237 (source: NCBI BLink).  protein_id AT3G12070.2p  transcript_id AT3G12070.2  protein_id AT3G12070.2p  transcript_id AT3G12070.2  
At3g12080	chr3:003847851	0.0	W/3847851-3848238,3848316-3848374,3848467-3848559,3848643-3848936,3849289-3849428,3849948-3850035,3850423-3850611,3850711-3850872,3851130-3851323,3851414-3851564,3851668-3851836,3851916-3851980	AT3G12080.1  CDS  gene_syn emb2738, embryo defective 2738  gene emb2738  go_component chloroplast|GO:0009507|18431481|IDA  go_function GTP binding|GO:0005525||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function GTP binding|GO:0005525||ISS  product emb2738 (embryo defective 2738); GTP binding  note embryo defective 2738 (emb2738); FUNCTIONS IN: GTP binding; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding (InterPro:IPR005289), Small GTP-binding protein (InterPro:IPR005225), GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: GTP-binding family protein (TAIR:AT5G39960.1); Has 29827 Blast hits to 16895 proteins in 1667 species: Archae - 139; Bacteria - 20018; Metazoa - 342; Fungi - 286; Plants - 215; Viruses - 0; Other Eukaryotes - 8827 (source: NCBI BLink).  protein_id AT3G12080.1p  transcript_id AT3G12080.1  protein_id AT3G12080.1p  transcript_id AT3G12080.1  
At3g12080	chr3:003847851	0.0	W/3847851-3848238,3848316-3848374,3848467-3848559,3848643-3848936,3849289-3849428,3849948-3850035,3850423-3850611,3850711-3850872,3851130-3851323,3851414-3851564,3851672-3851677	AT3G12080.2  CDS  gene_syn emb2738, embryo defective 2738  gene emb2738  go_component chloroplast|GO:0009507|18431481|IDA  go_function GTP binding|GO:0005525||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function GTP binding|GO:0005525||ISS  product emb2738 (embryo defective 2738); GTP binding  note embryo defective 2738 (emb2738); FUNCTIONS IN: GTP binding; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding (InterPro:IPR005289), Small GTP-binding protein (InterPro:IPR005225), GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: GTP-binding family protein (TAIR:AT5G39960.1); Has 29597 Blast hits to 16667 proteins in 1666 species: Archae - 139; Bacteria - 20008; Metazoa - 342; Fungi - 286; Plants - 211; Viruses - 0; Other Eukaryotes - 8611 (source: NCBI BLink).  protein_id AT3G12080.2p  transcript_id AT3G12080.2  protein_id AT3G12080.2p  transcript_id AT3G12080.2  
At3g12090	chr3:003853223	0.0	C/3853223-3853714,3852526-3852842,3852326-3852365	AT3G12090.1  CDS  gene_syn TET6, TETRASPANIN6  gene TET6  function Member of TETRASPANIN family  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process aging|GO:0007568||ISS  go_function molecular_function|GO:0003674||ND  product TET6 (TETRASPANIN6)  note TETRASPANIN6 (TET6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: TET9 (TETRASPANIN9) (TAIR:AT4G30430.1); Has 214 Blast hits to 214 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 212; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G12090.1p  transcript_id AT3G12090.1  protein_id AT3G12090.1p  transcript_id AT3G12090.1  
At3g12100	chr3:003856856	0.0	C/3856856-3857270,3856655-3856763,3856478-3856517,3856165-3856241,3855945-3856033,3855532-3855601,3855363-3855401,3855105-3855267	AT3G12100.2  CDS  go_component membrane|GO:0016020||IEA  go_function cation transmembrane transporter activity|GO:0008324||IEA  go_component membrane|GO:0016020||ISS  go_process cation transport|GO:0006812||ISS  go_process response to nematode|GO:0009624|16478044|IEP  go_function cation transmembrane transporter activity|GO:0008324||ISS  go_function efflux transmembrane transporter activity|GO:0015562||ISS  product cation efflux family protein / metal tolerance protein, putative  note cation efflux family protein / metal tolerance protein, putative; FUNCTIONS IN: cation transmembrane transporter activity, efflux transmembrane transporter activity; INVOLVED IN: cation transport, response to nematode; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: cation efflux family protein (TAIR:AT2G04620.1); Has 3478 Blast hits to 3381 proteins in 1028 species: Archae - 81; Bacteria - 2143; Metazoa - 708; Fungi - 216; Plants - 111; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).  protein_id AT3G12100.2p  transcript_id AT3G12100.2  protein_id AT3G12100.2p  transcript_id AT3G12100.2  
At3g12100	chr3:003856856	0.0	C/3856856-3857270,3856655-3856763,3856478-3856517,3856165-3856241,3855945-3856033,3855532-3855601,3855363-3855401,3855117-3855267,3854939-3855028,3854741-3854842	AT3G12100.1  CDS  go_component membrane|GO:0016020||IEA  go_function cation transmembrane transporter activity|GO:0008324||IEA  go_component membrane|GO:0016020||ISS  go_process cation transport|GO:0006812||ISS  go_process response to nematode|GO:0009624|16478044|IEP  go_function cation transmembrane transporter activity|GO:0008324||ISS  go_function efflux transmembrane transporter activity|GO:0015562||ISS  product cation efflux family protein / metal tolerance protein, putative  note cation efflux family protein / metal tolerance protein, putative; FUNCTIONS IN: cation transmembrane transporter activity, efflux transmembrane transporter activity; INVOLVED IN: cation transport, response to nematode; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: cation efflux family protein (TAIR:AT2G04620.1); Has 3834 Blast hits to 3552 proteins in 1043 species: Archae - 81; Bacteria - 2187; Metazoa - 847; Fungi - 320; Plants - 155; Viruses - 0; Other Eukaryotes - 244 (source: NCBI BLink).  protein_id AT3G12100.1p  transcript_id AT3G12100.1  protein_id AT3G12100.1p  transcript_id AT3G12100.1  
At3g12110	chr3:003858116	0.0	W/3858116-3858175,3858288-3858681,3858837-3859450,3859544-3859609	AT3G12110.1  CDS  gene_syn ACT11, actin-11  gene ACT11  function Encodes an actin that is expressed predominantly during reproductive development.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component cytoskeleton|GO:0005856|9037165|ISS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_process actin cytoskeleton organization|GO:0030036||TAS  go_function structural constituent of cytoskeleton|GO:0005200|9037165|ISS  go_function structural constituent of cytoskeleton|GO:0005200||ISS  product ACT11 (actin-11); structural constituent of cytoskeleton  note actin-11 (ACT11); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: response to cyclopentenone, actin cytoskeleton organization; LOCATED IN: mitochondrion, cytoskeleton, plasma membrane; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: ACT3 (actin 3); structural constituent of cytoskeleton (TAIR:AT3G53750.1); Has 11118 Blast hits to 10818 proteins in 2293 species: Archae - 6; Bacteria - 5; Metazoa - 4927; Fungi - 2969; Plants - 1095; Viruses - 2; Other Eukaryotes - 2114 (source: NCBI BLink).  protein_id AT3G12110.1p  transcript_id AT3G12110.1  protein_id AT3G12110.1p  transcript_id AT3G12110.1  
At3g12120	chr3:003860592	0.0	C/3860592-3861743	AT3G12120.1  CDS  gene_syn DELTA-12 DESATURASE, FAD2, FATTY ACID DESATURASE 2  gene FAD2  function Major enzyme responsible for the synthesis of 18:2 fatty acids in the endoplasmic reticulum. Contains His-rich motifs, which contribute to the interaction with the electron donor cytochrome b5.  go_process lipid metabolic process|GO:0006629||IEA  go_component endoplasmic reticulum|GO:0005783||NAS  go_function delta12-fatty acid dehydrogenase activity|GO:0016720|7907506|IGI  go_function omega-6 fatty acid desaturase activity|GO:0045485|8685264|IDA  product FAD2 (FATTY ACID DESATURASE 2); delta12-fatty acid dehydrogenase/ omega-6 fatty acid desaturase  note FATTY ACID DESATURASE 2 (FAD2); FUNCTIONS IN: omega-6 fatty acid desaturase activity, delta12-fatty acid dehydrogenase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: FAD3 (FATTY ACID DESATURASE 3); omega-3 fatty acid desaturase (TAIR:AT2G29980.1); Has 1843 Blast hits to 1842 proteins in 486 species: Archae - 0; Bacteria - 556; Metazoa - 26; Fungi - 173; Plants - 762; Viruses - 0; Other Eukaryotes - 326 (source: NCBI BLink).  protein_id AT3G12120.1p  transcript_id AT3G12120.1  protein_id AT3G12120.1p  transcript_id AT3G12120.1  
At3g12120	chr3:003860592	0.0	C/3860592-3861743	AT3G12120.2  CDS  gene_syn DELTA-12 DESATURASE, FAD2, FATTY ACID DESATURASE 2  gene FAD2  function Major enzyme responsible for the synthesis of 18:2 fatty acids in the endoplasmic reticulum. Contains His-rich motifs, which contribute to the interaction with the electron donor cytochrome b5.  go_process lipid metabolic process|GO:0006629||IEA  go_component endoplasmic reticulum|GO:0005783||NAS  go_function delta12-fatty acid dehydrogenase activity|GO:0016720|7907506|IGI  go_function omega-6 fatty acid desaturase activity|GO:0045485|8685264|IDA  product FAD2 (FATTY ACID DESATURASE 2); delta12-fatty acid dehydrogenase/ omega-6 fatty acid desaturase  note FATTY ACID DESATURASE 2 (FAD2); FUNCTIONS IN: omega-6 fatty acid desaturase activity, delta12-fatty acid dehydrogenase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: FAD3 (FATTY ACID DESATURASE 3); omega-3 fatty acid desaturase (TAIR:AT2G29980.1); Has 1843 Blast hits to 1842 proteins in 486 species: Archae - 0; Bacteria - 556; Metazoa - 26; Fungi - 173; Plants - 762; Viruses - 0; Other Eukaryotes - 326 (source: NCBI BLink).  protein_id AT3G12120.2p  transcript_id AT3G12120.2  protein_id AT3G12120.2p  transcript_id AT3G12120.2  
At3g12130	chr3:003866328	0.0	C/3866328-3866406,3865587-3865647,3864486-3865092	AT3G12130.1  CDS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product KH domain-containing protein / zinc finger (CCCH type) family protein  note KH domain-containing protein / zinc finger (CCCH type) family protein; FUNCTIONS IN: transcription factor activity, nucleic acid binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein / zinc finger (CCCH type) family protein (TAIR:AT5G06770.1); Has 951 Blast hits to 736 proteins in 106 species: Archae - 0; Bacteria - 4; Metazoa - 647; Fungi - 21; Plants - 174; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT3G12130.1p  transcript_id AT3G12130.1  protein_id AT3G12130.1p  transcript_id AT3G12130.1  
At3g12140	chr3:003870878	0.0	C/3870878-3870964,3870676-3870785,3870470-3870587,3870180-3870353,3869980-3870048,3869613-3869858,3869473-3869541,3869121-3869399	AT3G12140.3  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product emsy N terminus domain-containing protein / ENT domain-containing protein  note emsy N terminus domain-containing protein / ENT domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ENT (InterPro:IPR005491), Tudor-like, plant (InterPro:IPR014002); BEST Arabidopsis thaliana protein match is: emsy N terminus domain-containing protein / ENT domain-containing protein (TAIR:AT5G06780.1); Has 157 Blast hits to 145 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G12140.3p  transcript_id AT3G12140.3  protein_id AT3G12140.3p  transcript_id AT3G12140.3  
At3g12140	chr3:003870878	0.0	C/3870878-3870964,3870676-3870785,3870470-3870587,3870180-3870353,3869980-3870048,3869613-3869858,3869473-3869541,3869336-3869399,3868947-3868993	AT3G12140.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product emsy N terminus domain-containing protein / ENT domain-containing protein  note emsy N terminus domain-containing protein / ENT domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ENT (InterPro:IPR005491), Tudor-like, plant (InterPro:IPR014002); BEST Arabidopsis thaliana protein match is: emsy N terminus domain-containing protein / ENT domain-containing protein (TAIR:AT5G06780.1); Has 157 Blast hits to 145 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G12140.1p  transcript_id AT3G12140.1  protein_id AT3G12140.1p  transcript_id AT3G12140.1  
At3g12140	chr3:003870878	0.0	C/3870878-3870964,3870676-3870785,3870470-3870587,3870180-3870353,3869980-3870048,3869613-3869858,3869473-3869541,3869336-3869399,3868947-3868993	AT3G12140.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product emsy N terminus domain-containing protein / ENT domain-containing protein  note emsy N terminus domain-containing protein / ENT domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ENT (InterPro:IPR005491), Tudor-like, plant (InterPro:IPR014002); BEST Arabidopsis thaliana protein match is: emsy N terminus domain-containing protein / ENT domain-containing protein (TAIR:AT5G06780.1); Has 157 Blast hits to 145 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G12140.2p  transcript_id AT3G12140.2  protein_id AT3G12140.2p  transcript_id AT3G12140.2  
At3g12143	chr3:003872314	0.0	C/3872314-3873608	AT3G12143.1  pseudogenic_transcript  pseudo  gene_syn T21B14.21  note pseudogene, similar to polygalacturonase-inhibitor protein, blastp match of 53% identity and 7.5e-64 P-value to GP|18148923|dbj|BAB83520.1||AB064545 polygalacturonase-inhibitor protein {Citrus sp. cv. Sainumphung}  
At3g12145	chr3:003875472	0.0	C/3875472-3876075,3874764-3875137	AT3G12145.1  CDS  gene_syn FLOR1, FLR1, T21B14.20  gene FLR1  function A novel leucine-rich repeat protein. Interacts directly with MADS domain transcription factor.  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function enzyme inhibitor activity|GO:0004857||ISS  go_function transcription factor binding|GO:0008134|11689012|IDA  product FLR1; enzyme inhibitor/ transcription factor binding  note FLR1; FUNCTIONS IN: enzyme inhibitor activity, transcription factor binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1); protein binding (TAIR:AT5G06860.1); Has 14120 Blast hits to 5306 proteins in 260 species: Archae - 0; Bacteria - 108; Metazoa - 59; Fungi - 0; Plants - 13615; Viruses - 0; Other Eukaryotes - 338 (source: NCBI BLink).  protein_id AT3G12145.1p  transcript_id AT3G12145.1  protein_id AT3G12145.1p  transcript_id AT3G12145.1  
At3g12150	chr3:003878234	0.0	C/3878234-3878621,3877929-3878013,3877640-3877809,3876950-3877224,3876688-3876861	AT3G12150.1  CDS  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 276 Blast hits to 200 proteins in 88 species: Archae - 0; Bacteria - 59; Metazoa - 189; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G12150.1p  transcript_id AT3G12150.1  protein_id AT3G12150.1p  transcript_id AT3G12150.1  
At3g12160	chr3:003880211	0.0	C/3880211-3880437,3879495-3879936	AT3G12160.1  CDS  gene_syn ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, ATRABA4D, RAB GTPASE HOMOLOG A4D, RABA4D, T21B14.2  gene RABA4D  function Encodes RABA4D, a member of the Arabidopsis RabA4 subfamily of Rab GTPase proteins. It is transported in exocytic vesicles to the apical tip of pollen tubes where it appears to promote tip growth. Proper localization of RabA4d depends on ROP1, RIC3, and RIC4 activity.  go_function GTP binding|GO:0005525||IEA  go_component apical part of cell|GO:0045177|18591430|IDA  go_component exocytic vesicle|GO:0070382|18591430|IDA  go_process pollen tube growth|GO:0009860|18591430|IDA  go_process pollen tube development|GO:0048868|19108776|IGI  go_process regulation of pollen tube growth|GO:0080092|19208902|IMP  go_function GTP binding|GO:0005525||ISS  product RABA4D (RAB GTPASE HOMOLOG A4D); GTP binding  note RAB GTPASE HOMOLOG A4D (RABA4D); FUNCTIONS IN: GTP binding; INVOLVED IN: regulation of pollen tube growth, pollen tube growth, pollen tube development; LOCATED IN: exocytic vesicle, apical part of cell; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: ATRABA4C; GTP binding (TAIR:AT5G47960.1); Has 23196 Blast hits to 23164 proteins in 638 species: Archae - 17; Bacteria - 107; Metazoa - 12861; Fungi - 2979; Plants - 2098; Viruses - 19; Other Eukaryotes - 5115 (source: NCBI BLink).  protein_id AT3G12160.1p  transcript_id AT3G12160.1  protein_id AT3G12160.1p  transcript_id AT3G12160.1  
At3g12170	chr3:003881021	0.0	W/3881021-3881062,3881373-3881471,3881573-3881674,3881756-3881815,3881901-3882007,3882094-3882176,3882268-3882358,3882451-3882655	AT3G12170.1  CDS  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: ATJ6 (Arabidopsis J-domain protein 6); heat shock protein binding / unfolded protein binding (TAIR:AT5G06910.1); Has 16438 Blast hits to 16435 proteins in 1943 species: Archae - 109; Bacteria - 5179; Metazoa - 3539; Fungi - 1500; Plants - 1231; Viruses - 45; Other Eukaryotes - 4835 (source: NCBI BLink).  protein_id AT3G12170.1p  transcript_id AT3G12170.1  protein_id AT3G12170.1p  transcript_id AT3G12170.1  
At3g12180	chr3:003883464	0.0	W/3883464-3883538,3884020-3884201,3884287-3884409,3884510-3884570	AT3G12180.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_component membrane|GO:0016020||ISS  go_function molecular_function|GO:0003674||ND  product cornichon family protein  note cornichon family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular signaling cascade; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cornichon (InterPro:IPR003377); BEST Arabidopsis thaliana protein match is: cornichon family protein (TAIR:AT1G12390.1); Has 450 Blast hits to 450 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 269; Fungi - 110; Plants - 41; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT3G12180.1p  transcript_id AT3G12180.1  protein_id AT3G12180.1p  transcript_id AT3G12180.1  
At3g12190	chr3:003886183	0.0	W/3886183-3886992	AT3G12190.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: protein transport protein-related (TAIR:AT5G27220.1); Has 37020 Blast hits to 20334 proteins in 1003 species: Archae - 493; Bacteria - 2404; Metazoa - 19960; Fungi - 1962; Plants - 927; Viruses - 159; Other Eukaryotes - 11115 (source: NCBI BLink).  protein_id AT3G12190.1p  transcript_id AT3G12190.1  protein_id AT3G12190.1p  transcript_id AT3G12190.1  
At3g12200	chr3:003890420	0.0	C/3890420-3890550,3890053-3890119,3889576-3889641,3889452-3889498,3889297-3889342,3889111-3889191,3888967-3889009,3888820-3888869,3888618-3888699,3888496-3888545,3888328-3888401,3888188-3888239,3887173-3888099	AT3G12200.1  CDS  gene_syn AtNek7, NIMA-related kinase7  gene AtNek7  function Encodes AtNek7, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes.  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product AtNek7 (NIMA-related kinase7); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note NIMA-related kinase7 (AtNek7); FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase, active site (InterPro:IPR008266), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATNEK5 (NIMA-RELATED KINASE5); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT3G20860.1); Has 72323 Blast hits to 71555 proteins in 1749 species: Archae - 42; Bacteria - 5472; Metazoa - 32802; Fungi - 7017; Plants - 12030; Viruses - 389; Other Eukaryotes - 14571 (source: NCBI BLink).  protein_id AT3G12200.1p  transcript_id AT3G12200.1  protein_id AT3G12200.1p  transcript_id AT3G12200.1  
At3g12203	chr3:003893817	0.0	C/3893817-3893956,3893592-3893737,3893421-3893497,3893205-3893327,3893009-3893111,3892888-3892925,3892692-3892793,3892531-3892617,3892360-3892422,3892198-3892272,3891993-3892111,3891770-3891883,3891547-3891592,3891357-3891437	AT3G12203.1  CDS  gene_syn scpl17, serine carboxypeptidase-like 17  gene scpl17  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl17 (serine carboxypeptidase-like 17); serine-type carboxypeptidase  note serine carboxypeptidase-like 17 (scpl17); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl16 (serine carboxypeptidase-like 16); serine-type carboxypeptidase (TAIR:AT3G12220.1); Has 2528 Blast hits to 2469 proteins in 280 species: Archae - 0; Bacteria - 129; Metazoa - 563; Fungi - 548; Plants - 983; Viruses - 0; Other Eukaryotes - 305 (source: NCBI BLink).  protein_id AT3G12203.1p  transcript_id AT3G12203.1  protein_id AT3G12203.1p  transcript_id AT3G12203.1  
At3g12210	chr3:003894843	0.0	W/3894843-3895066,3895166-3895361,3895451-3895498	AT3G12210.1  CDS  go_component intracellular|GO:0005622||IEA  go_function sequence-specific DNA binding|GO:0043565||IEA  go_process biological_process|GO:0008150||ND  product sequence-specific DNA binding  note sequence-specific DNA binding; FUNCTIONS IN: sequence-specific DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583); Has 162 Blast hits to 162 proteins in 72 species: Archae - 1; Bacteria - 0; Metazoa - 86; Fungi - 51; Plants - 21; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G12210.1p  transcript_id AT3G12210.1  protein_id AT3G12210.1p  transcript_id AT3G12210.1  
At3g12210	chr3:003894843	0.0	W/3894843-3895066,3895166-3895361,3895456-3895542,3895757-3895879	AT3G12210.2  CDS  go_component intracellular|GO:0005622||IEA  go_function sequence-specific DNA binding|GO:0043565||IEA  go_process biological_process|GO:0008150||ND  product sequence-specific DNA binding  note sequence-specific DNA binding; FUNCTIONS IN: sequence-specific DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583); Has 163 Blast hits to 163 proteins in 72 species: Archae - 1; Bacteria - 0; Metazoa - 86; Fungi - 51; Plants - 22; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G12210.2p  transcript_id AT3G12210.2  protein_id AT3G12210.2p  transcript_id AT3G12210.2  
At3g12220	chr3:003898785	0.0	C/3898785-3898915,3898566-3898711,3898409-3898485,3898197-3898319,3898009-3898111,3897886-3897923,3897696-3897797,3897530-3897616,3897376-3897444,3897226-3897297,3897030-3897148,3896831-3896944,3896701-3896746,3896531-3896611	AT3G12220.1  CDS  gene_syn scpl16, serine carboxypeptidase-like 16  gene scpl16  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl16 (serine carboxypeptidase-like 16); serine-type carboxypeptidase  note serine carboxypeptidase-like 16 (scpl16); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl14 (serine carboxypeptidase-like 14); serine-type carboxypeptidase (TAIR:AT3G12230.1); Has 2817 Blast hits to 2751 proteins in 358 species: Archae - 0; Bacteria - 381; Metazoa - 567; Fungi - 552; Plants - 982; Viruses - 0; Other Eukaryotes - 335 (source: NCBI BLink).  protein_id AT3G12220.1p  transcript_id AT3G12220.1  protein_id AT3G12220.1p  transcript_id AT3G12220.1  
At3g12230	chr3:003901749	0.0	C/3901749-3901879,3901530-3901675,3901371-3901447,3901163-3901285,3900968-3901070,3900850-3900887,3900661-3900762,3900485-3900571,3900331-3900399,3900160-3900231,3899969-3900087,3899760-3899873,3899611-3899656,3899431-3899511	AT3G12230.1  CDS  gene_syn scpl14, serine carboxypeptidase-like 14  gene scpl14  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl14 (serine carboxypeptidase-like 14); serine-type carboxypeptidase  note serine carboxypeptidase-like 14 (scpl14); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: SCPL15 (serine carboxypeptidase-like 15); serine-type carboxypeptidase (TAIR:AT3G12240.1); Has 2574 Blast hits to 2506 proteins in 296 species: Archae - 0; Bacteria - 162; Metazoa - 574; Fungi - 548; Plants - 977; Viruses - 0; Other Eukaryotes - 313 (source: NCBI BLink).  protein_id AT3G12230.1p  transcript_id AT3G12230.1  protein_id AT3G12230.1p  transcript_id AT3G12230.1  
At3g12240	chr3:003904785	0.0	C/3904785-3904918,3904551-3904696,3904388-3904464,3904175-3904297,3903989-3904091,3903870-3903907,3903674-3903775,3903486-3903572,3903328-3903396,3903148-3903219,3902955-3903073,3902747-3902860,3902611-3902656,3902436-3902516	AT3G12240.1  CDS  gene_syn SCPL15, serine carboxypeptidase-like 15  gene SCPL15  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product SCPL15 (serine carboxypeptidase-like 15); serine-type carboxypeptidase  note serine carboxypeptidase-like 15 (SCPL15); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl14 (serine carboxypeptidase-like 14); serine-type carboxypeptidase (TAIR:AT3G12230.1); Has 2675 Blast hits to 2611 proteins in 331 species: Archae - 0; Bacteria - 257; Metazoa - 562; Fungi - 552; Plants - 977; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink).  protein_id AT3G12240.1p  transcript_id AT3G12240.1  protein_id AT3G12240.1p  transcript_id AT3G12240.1  
At3g12250	chr3:003906351	0.0	W/3906351-3906416,3906451-3906525,3906621-3906692,3906784-3906843,3906968-3907045,3907379-3907430,3907720-3907991,3908066-3908311,3908437-3908583	AT3G12250.4  CDS  gene_syn BZIP45, TGA6, TGACG MOTIF-BINDING FACTOR 6  gene TGA6  function basic leucine zipper transcription factor involved in the activation of SA-responsive genes.  go_component nucleus|GO:0005634||IEA  go_process response to xenobiotic stimulus|GO:0009410|18984675|IGI  go_process systemic acquired resistance|GO:0009627|10339621|IPI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700|17369431|IMP  go_function transcription factor activity|GO:0003700|9225852|IDA  go_function transcription factor activity|GO:0003700||ISS  product TGA6 (TGACG MOTIF-BINDING FACTOR 6); DNA binding / transcription factor  note TGACG MOTIF-BINDING FACTOR 6 (TGA6); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: systemic acquired resistance, response to xenobiotic stimulus; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: AHBP-1B; DNA binding / transcription activator/ transcription factor/ transcription repressor (TAIR:AT5G06950.4); Has 565 Blast hits to 564 proteins in 50 species: Archae - 0; Bacteria - 8; Metazoa - 5; Fungi - 4; Plants - 501; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT3G12250.4p  transcript_id AT3G12250.4  protein_id AT3G12250.4p  transcript_id AT3G12250.4  
At3g12250	chr3:003906351	0.0	W/3906351-3906416,3906621-3906692,3906784-3906843,3906968-3907045,3907379-3907430,3907720-3907991,3908066-3908311,3908437-3908583	AT3G12250.1  CDS  gene_syn BZIP45, TGA6, TGACG MOTIF-BINDING FACTOR 6  gene TGA6  function basic leucine zipper transcription factor involved in the activation of SA-responsive genes.  go_component nucleus|GO:0005634||IEA  go_process response to xenobiotic stimulus|GO:0009410|18984675|IGI  go_process systemic acquired resistance|GO:0009627|10339621|IPI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700|17369431|IMP  go_function transcription factor activity|GO:0003700|9225852|IDA  go_function transcription factor activity|GO:0003700||ISS  product TGA6 (TGACG MOTIF-BINDING FACTOR 6); DNA binding / transcription factor  note TGACG MOTIF-BINDING FACTOR 6 (TGA6); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: systemic acquired resistance, response to xenobiotic stimulus; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616), DNA/RNA non-specific endonuclease, active site (InterPro:IPR018524); BEST Arabidopsis thaliana protein match is: AHBP-1B; DNA binding / transcription activator/ transcription factor/ transcription repressor (TAIR:AT5G06950.4); Has 607 Blast hits to 606 proteins in 58 species: Archae - 0; Bacteria - 8; Metazoa - 9; Fungi - 8; Plants - 533; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT3G12250.1p  transcript_id AT3G12250.1  protein_id AT3G12250.1p  transcript_id AT3G12250.1  
At3g12250	chr3:003906351	0.0	W/3906351-3906416,3906621-3906692,3906784-3906843,3906968-3907045,3907379-3907430,3907720-3907991,3908066-3908311,3908437-3908583	AT3G12250.2  CDS  gene_syn BZIP45, TGA6, TGACG MOTIF-BINDING FACTOR 6  gene TGA6  function basic leucine zipper transcription factor involved in the activation of SA-responsive genes.  go_component nucleus|GO:0005634||IEA  go_process response to xenobiotic stimulus|GO:0009410|18984675|IGI  go_process systemic acquired resistance|GO:0009627|10339621|IPI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700|17369431|IMP  go_function transcription factor activity|GO:0003700|9225852|IDA  go_function transcription factor activity|GO:0003700||ISS  product TGA6 (TGACG MOTIF-BINDING FACTOR 6); DNA binding / transcription factor  note TGACG MOTIF-BINDING FACTOR 6 (TGA6); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: systemic acquired resistance, response to xenobiotic stimulus; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616), DNA/RNA non-specific endonuclease, active site (InterPro:IPR018524); BEST Arabidopsis thaliana protein match is: AHBP-1B; DNA binding / transcription activator/ transcription factor/ transcription repressor (TAIR:AT5G06950.4); Has 607 Blast hits to 606 proteins in 58 species: Archae - 0; Bacteria - 8; Metazoa - 9; Fungi - 8; Plants - 533; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT3G12250.2p  transcript_id AT3G12250.2  protein_id AT3G12250.2p  transcript_id AT3G12250.2  
At3g12250	chr3:003906573	0.0	W/3906573-3906692,3906784-3906843,3906968-3907045,3907379-3907430,3907720-3907991,3908066-3908311,3908437-3908583	AT3G12250.3  CDS  gene_syn BZIP45, TGA6, TGACG MOTIF-BINDING FACTOR 6  gene TGA6  function basic leucine zipper transcription factor involved in the activation of SA-responsive genes.  go_component nucleus|GO:0005634||IEA  go_process response to xenobiotic stimulus|GO:0009410|18984675|IGI  go_process systemic acquired resistance|GO:0009627|10339621|IPI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700|17369431|IMP  go_function transcription factor activity|GO:0003700|9225852|IDA  go_function transcription factor activity|GO:0003700||ISS  product TGA6 (TGACG MOTIF-BINDING FACTOR 6); DNA binding / transcription factor  note TGACG MOTIF-BINDING FACTOR 6 (TGA6); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: systemic acquired resistance, response to xenobiotic stimulus; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616), DNA/RNA non-specific endonuclease, active site (InterPro:IPR018524); BEST Arabidopsis thaliana protein match is: AHBP-1B; DNA binding / transcription activator/ transcription factor/ transcription repressor (TAIR:AT5G06950.4); Has 569 Blast hits to 568 proteins in 52 species: Archae - 0; Bacteria - 14; Metazoa - 5; Fungi - 0; Plants - 501; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT3G12250.3p  transcript_id AT3G12250.3  protein_id AT3G12250.3p  transcript_id AT3G12250.3  
At3g12250	chr3:003906636	0.0	W/3906636-3906692,3906784-3906843,3906968-3907045,3907379-3907430,3907720-3907991,3908066-3908311,3908437-3908583	AT3G12250.5  CDS  gene_syn BZIP45, TGA6, TGACG MOTIF-BINDING FACTOR 6  gene TGA6  function basic leucine zipper transcription factor involved in the activation of SA-responsive genes.  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process response to xenobiotic stimulus|GO:0009410|18984675|IGI  go_process systemic acquired resistance|GO:0009627|10339621|IPI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700|17369431|IMP  go_function transcription factor activity|GO:0003700|9225852|IDA  go_function transcription factor activity|GO:0003700||ISS  product TGA6 (TGACG MOTIF-BINDING FACTOR 6); DNA binding / transcription factor  note TGACG MOTIF-BINDING FACTOR 6 (TGA6); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: systemic acquired resistance, response to xenobiotic stimulus; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: AHBP-1B; DNA binding / transcription activator/ transcription factor/ transcription repressor (TAIR:AT5G06950.4); Has 551 Blast hits to 550 proteins in 46 species: Archae - 0; Bacteria - 8; Metazoa - 5; Fungi - 0; Plants - 493; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT3G12250.5p  transcript_id AT3G12250.5  protein_id AT3G12250.5p  transcript_id AT3G12250.5  
At3g12260	chr3:003910119	0.0	C/3910119-3910337,3909252-3909434	AT3G12260.1  CDS  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|12837548|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_function catalytic activity|GO:0003824||ISS  product complex 1 family protein / LVR family protein  note complex 1 family protein / LVR family protein; FUNCTIONS IN: catalytic activity; LOCATED IN: mitochondrion, respiratory chain complex I, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 192 Blast hits to 192 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 102; Fungi - 33; Plants - 31; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT3G12260.1p  transcript_id AT3G12260.1  protein_id AT3G12260.1p  transcript_id AT3G12260.1  
At3g12270	chr3:003910642	0.0	W/3910642-3910959,3911040-3911507,3911623-3911720,3911953-3912031,3912116-3912355,3912443-3912610,3912688-3913122	AT3G12270.1  CDS  gene_syn ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, ATPRMT3, PRMT3, PROTEIN ARGININE METHYLTRANSFERASE 3  gene PRMT3  go_component intracellular|GO:0005622||IEA  go_process metabolic process|GO:0008152||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function methyltransferase activity|GO:0008168||ISS  product PRMT3 (PROTEIN ARGININE METHYLTRANSFERASE 3); methyltransferase/ zinc ion binding  note PROTEIN ARGININE METHYLTRANSFERASE 3 (PRMT3); FUNCTIONS IN: methyltransferase activity, zinc ion binding; INVOLVED IN: metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A); protein-arginine N-methyltransferase (TAIR:AT2G19670.1); Has 2126 Blast hits to 2103 proteins in 400 species: Archae - 31; Bacteria - 380; Metazoa - 1031; Fungi - 177; Plants - 164; Viruses - 0; Other Eukaryotes - 343 (source: NCBI BLink).  protein_id AT3G12270.1p  transcript_id AT3G12270.1  protein_id AT3G12270.1p  transcript_id AT3G12270.1  
At3g12280	chr3:003918350	0.0	C/3918350-3918433,3918130-3918234,3917901-3918043,3917725-3917821,3917592-3917638,3917132-3917324,3916934-3917000,3916668-3916847,3915512-3916567,3915254-3915416,3915083-3915155,3914785-3914961,3914572-3914691,3914357-3914489,3914152-3914264,3913928-3914043,3913671-3913845	AT3G12280.1  CDS  gene_syn ATRBR1, RB, RBR, RBR1, RETINOBLASTOMA PROTEIN, RETINOBLASTOMA-RELATED, RETINOBLASTOMA-RELATED 1, RETINOBLASTOMA-RELATED PROTEIN 1  gene RBR1  function Encodes a retinoblastoma homologue RETINOBLASTOMA-RELATED protein (RBR or RBR1). RBR controls nuclear proliferation in the female gametophyte. Also required for correct differentiation of male gametophytic cell types. Regulates stem cell maintenance in Arabidopsis roots. Involved in the determination of cell cycle arrest in G1 phase after sucrose starvation. RBR1 is also involved in regulation of imprinted genes. Together with MSI1 it represses the expression of MET1. This in turn activates expression of the imprinted genes FIS2 and FWA.  go_component cytosol|GO:0005829|18433157|IDA  go_process G1/S transition of mitotic cell cycle|GO:0000082|18064404|IMP  go_process G1/S transition of mitotic cell cycle|GO:0000082|9620273|TAS  go_process nuclear division|GO:0000280|15201912|IMP  go_process genetic imprinting|GO:0006349|18700816|IPI  go_process embryo sac development|GO:0009553|17172356|IMP  go_process embryo sac development|GO:0009553|18976913|IMP  go_process pollen development|GO:0009555|18976913|IMP  go_process double fertilization forming a zygote and endosperm|GO:0009567|17555967|IEP  go_process endosperm development|GO:0009960|15201912|IMP  go_process trichome morphogenesis|GO:0010090|16361519|IMP  go_process cell growth|GO:0016049|16377572|IMP  go_process stem cell maintenance|GO:0019827|16377572|IMP  go_process generative cell differentiation|GO:0022619|18976913|IMP  go_process regulation of DNA endoreduplication|GO:0032875|16361519|IMP  go_process leaf development|GO:0048366|16361519|IMP  go_process regulation of cell cycle|GO:0051726|15201912|IMP  go_function transcription factor binding|GO:0008134|9620273|TAS  product RBR1 (RETINOBLASTOMA-RELATED 1); transcription factor binding  note RETINOBLASTOMA-RELATED 1 (RBR1); FUNCTIONS IN: transcription factor binding; INVOLVED IN: in 14 processes; LOCATED IN: cytosol; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Retinoblastoma-associated protein, B-box (InterPro:IPR002719), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Retinoblastoma-associated protein, A-box (InterPro:IPR002720), Cyclin (InterPro:IPR006670); Has 563 Blast hits to 376 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 451; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT3G12280.1p  transcript_id AT3G12280.1  protein_id AT3G12280.1p  transcript_id AT3G12280.1  
At3g12290	chr3:003919591	0.0	W/3919591-3919704,3920153-3920336,3920510-3920667,3920775-3920987,3921096-3921326	AT3G12290.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process metabolic process|GO:0008152||IEA  go_process folic acid and derivative biosynthetic process|GO:0009396||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_process folic acid and derivative biosynthetic process|GO:0009396||ISS  go_function catalytic activity|GO:0003824||ISS  product tetrahydrofolate dehydrogenase/cyclohydrolase, putative  note tetrahydrofolate dehydrogenase/cyclohydrolase, putative; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: folic acid and derivative biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetrahydrofolate dehydrogenase/cyclohydrolase (InterPro:IPR000672), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: tetrahydrofolate dehydrogenase/cyclohydrolase, putative (TAIR:AT4G00620.1); Has 7113 Blast hits to 7108 proteins in 1554 species: Archae - 77; Bacteria - 3117; Metazoa - 345; Fungi - 200; Plants - 87; Viruses - 0; Other Eukaryotes - 3287 (source: NCBI BLink).  protein_id AT3G12290.1p  transcript_id AT3G12290.1  protein_id AT3G12290.1p  transcript_id AT3G12290.1  
At3g12300	chr3:003923040	0.0	C/3923040-3923092,3922908-3922939,3922440-3922681,3921882-3922118,3921787-3921795	AT3G12300.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF667 (InterPro:IPR007714); Has 280 Blast hits to 278 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 188; Fungi - 2; Plants - 29; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT3G12300.1p  transcript_id AT3G12300.1  protein_id AT3G12300.1p  transcript_id AT3G12300.1  
At3g12320	chr3:003924034	0.0	W/3924034-3924314,3924428-3924569,3924657-3924776,3924857-3924999,3925139-3925262	AT3G12320.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06980.1); Has 49 Blast hits to 49 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G12320.1p  transcript_id AT3G12320.1  protein_id AT3G12320.1p  transcript_id AT3G12320.1  
At3g12340	chr3:003929334	0.0	C/3929334-3929346,3929131-3929210,3928713-3928948,3928489-3928628,3927708-3928032,3927459-3927638,3926936-3927076,3926414-3926537,3926215-3926302,3926060-3926101,3925921-3925969,3925720-3925801	AT3G12340.1  CDS  go_process protein folding|GO:0006457||IEA  go_component chloroplast thylakoid lumen|GO:0009543||ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  go_function FK506 binding|GO:0005528||ISS  product FK506 binding / peptidyl-prolyl cis-trans isomerase  note FK506 binding / peptidyl-prolyl cis-trans isomerase; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: chloroplast thylakoid lumen; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: immunophilin-related / FKBP-type peptidyl-prolyl cis-trans isomerase-related (TAIR:AT4G25340.1); Has 9757 Blast hits to 8383 proteins in 1096 species: Archae - 72; Bacteria - 2664; Metazoa - 3082; Fungi - 663; Plants - 562; Viruses - 24; Other Eukaryotes - 2690 (source: NCBI BLink).  protein_id AT3G12340.1p  transcript_id AT3G12340.1  protein_id AT3G12340.1p  transcript_id AT3G12340.1  
At3g12345	chr3:003930333	0.0	C/3930333-3930893	AT3G12345.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; Has 25 Blast hits to 25 proteins in 5 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G12345.1p  transcript_id AT3G12345.1  protein_id AT3G12345.1p  transcript_id AT3G12345.1  
At3g12350	chr3:003931626	0.0	W/3931626-3932456,3932667-3933104	AT3G12350.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); Has 33 Blast hits to 33 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 29; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G12350.1p  transcript_id AT3G12350.1  protein_id AT3G12350.1p  transcript_id AT3G12350.1  
At3g12360	chr3:003934146	0.0	W/3934146-3934170,3934591-3935097,3935180-3935589,3935665-3936495	AT3G12360.1  CDS  gene_syn INCREASED TOLERANCE TO NACL, ITN1  gene ITN1  function Encodes a protein with an ankyrin motif and transmembrane domains that is involved in salt tolerance. Expressed throughout the plant and localized to the plasma membrane. Loss of function mutations show an increased tolerance to salt based on assaying seedling growth in the presence of salt. In the mutants, induction of genes required for production of reactive oxygen species is reduced suggesting that itn1 promotes ROS production.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|18643991|IDA  go_process response to salt stress|GO:0009651|18643991|IMP  go_function protein binding|GO:0005515||ISS  product ITN1 (INCREASED TOLERANCE TO NACL); protein binding  note INCREASED TOLERANCE TO NACL (ITN1); FUNCTIONS IN: protein binding; INVOLVED IN: response to salt stress; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: protein binding (TAIR:AT3G09550.1); Has 49427 Blast hits to 20980 proteins in 783 species: Archae - 33; Bacteria - 3367; Metazoa - 24673; Fungi - 4429; Plants - 2517; Viruses - 592; Other Eukaryotes - 13816 (source: NCBI BLink).  protein_id AT3G12360.1p  transcript_id AT3G12360.1  protein_id AT3G12360.1p  transcript_id AT3G12360.1  
At3g12370	chr3:003937464	0.0	C/3937464-3937979	AT3G12370.1  CDS  go_component intracellular|GO:0005622||IEA  go_process ribosome biogenesis|GO:0042254||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L10 family protein  note ribosomal protein L10 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L10 (InterPro:IPR001790); BEST Arabidopsis thaliana protein match is: ribosomal protein L10 family protein (TAIR:AT5G13510.1); Has 2905 Blast hits to 2905 proteins in 855 species: Archae - 0; Bacteria - 1744; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1122 (source: NCBI BLink).  protein_id AT3G12370.1p  transcript_id AT3G12370.1  protein_id AT3G12370.1p  transcript_id AT3G12370.1  
At3g12380	chr3:003940668	0.0	C/3940668-3940710,3940430-3940539,3940170-3940279,3939988-3940078,3939457-3939900,3939244-3939371,3938309-3939155	AT3G12380.1  CDS  gene_syn ACTIN-RELATED PROTEIN 5, ATARP5  gene ATARP5  function Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP gene family.  go_component nucleus|GO:0005634|11891255|TAS  go_process actin filament-based process|GO:0030029|11891255|TAS  go_function structural constituent of cytoskeleton|GO:0005200|11891255|ISS  product ATARP5 (ACTIN-RELATED PROTEIN 5); structural constituent of cytoskeleton  note ACTIN-RELATED PROTEIN 5 (ATARP5); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: actin filament-based process; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: ACT11 (actin-11); structural constituent of cytoskeleton (TAIR:AT3G12110.1); Has 16766 Blast hits to 10625 proteins in 1967 species: Archae - 13; Bacteria - 181; Metazoa - 8120; Fungi - 2676; Plants - 1451; Viruses - 32; Other Eukaryotes - 4293 (source: NCBI BLink).  protein_id AT3G12380.1p  transcript_id AT3G12380.1  protein_id AT3G12380.1p  transcript_id AT3G12380.1  
At3g12385	chr3:003942006	0.0	W/3942006-3942077	AT3G12385.1  tRNA  gene_syn 60748.TRNA-LYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Lys (anticodon: TTT)  transcript_id AT3G12385.1  
At3g12390	chr3:003942344	0.0	W/3942344-3942400,3942658-3942742,3943024-3943154,3943257-3943595	AT3G12390.1  CDS  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  product nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative  note nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative; INVOLVED IN: response to salt stress; LOCATED IN: cytosolic ribosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Nascent polypeptide-associated complex, alpha subunit (InterPro:IPR016641), Nascent polypeptide-associated complex NAC (InterPro:IPR002715); BEST Arabidopsis thaliana protein match is: NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3) (TAIR:AT5G13850.1); Has 5006 Blast hits to 2282 proteins in 284 species: Archae - 50; Bacteria - 639; Metazoa - 1963; Fungi - 710; Plants - 330; Viruses - 56; Other Eukaryotes - 1258 (source: NCBI BLink).  protein_id AT3G12390.1p  transcript_id AT3G12390.1  protein_id AT3G12390.1p  transcript_id AT3G12390.1  
At3g12400	chr3:003944600	0.0	C/3944600-3945796	AT3G12400.1  CDS  gene_syn ATELC, ELC  gene ELC  function Mutants of this gene were initially identified because of the trichome morphogenesis phenotype. Those trichomes have multiple nuclei, a defect that turns out not to be restricted to the trichomes but also in all endoreduplicating cell types. This gene encodes a ubiquitin-binding protein with sequence similarities with yeast proteins that are components of the ESCRTI-III complexes. The Arabidopsis protein is found associated with the endosome.  go_component ESCRT I complex|GO:0000813|17090720|ISS  go_component early endosome|GO:0005769|17090720|IDA  go_component late endosome|GO:0005770|17090720|IDA  go_component protein complex|GO:0043234|17090720|IDA  go_process trichome branching|GO:0010091|17090720|IMP  go_process cell division|GO:0051301|17090720|IMP  go_function ubiquitin binding|GO:0043130|17090720|IDA  product ELC; ubiquitin binding  note ELC; FUNCTIONS IN: ubiquitin binding; INVOLVED IN: trichome branching, cell division; LOCATED IN: late endosome, ESCRT I complex, protein complex, early endosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Tumour susceptibility gene 101 (InterPro:IPR008883), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), Steadiness box (InterPro:IPR017916); BEST Arabidopsis thaliana protein match is: ELC-Like (ELCH-like); small conjugating protein ligase (TAIR:AT5G13860.1); Has 466 Blast hits to 431 proteins in 128 species: Archae - 0; Bacteria - 2; Metazoa - 253; Fungi - 126; Plants - 31; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT3G12400.1p  transcript_id AT3G12400.1  protein_id AT3G12400.1p  transcript_id AT3G12400.1  
At3g12410	chr3:003946267	0.0	C/3946267-3946959	AT3G12410.1  CDS  go_component intracellular|GO:0005622||IEA  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function 3 -5  exonuclease activity|GO:0008408||IEA  product 3 -5  exonuclease/ nucleic acid binding  note 3 -5  exonuclease/ nucleic acid binding; FUNCTIONS IN: 3 -5  exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), 3&apos;-5&apos; exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: 3 -5  exonuclease/ nucleic acid binding (TAIR:AT3G12460.1); Has 117 Blast hits to 109 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 2; Plants - 108; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G12410.1p  transcript_id AT3G12410.1  protein_id AT3G12410.1p  transcript_id AT3G12410.1  
At3g12420	chr3:003948564	0.0	C/3948564-3948882,3948137-3948341,3948014-3948047	AT3G12420.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: 3 -5  exonuclease/ nucleic acid binding (TAIR:AT3G12410.1).  protein_id AT3G12420.1p  transcript_id AT3G12420.1  protein_id AT3G12420.1p  transcript_id AT3G12420.1  
At3g12430	chr3:003950129	0.0	C/3950129-3950377,3949580-3950047	AT3G12430.1  CDS  go_component intracellular|GO:0005622||IEA  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function 3 -5  exonuclease activity|GO:0008408||IEA  product 3 -5  exonuclease/ nucleic acid binding  note 3 -5  exonuclease/ nucleic acid binding; FUNCTIONS IN: 3 -5  exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), 3&apos;-5&apos; exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: 3 -5  exonuclease/ nucleic acid binding (TAIR:AT3G12460.1); Has 110 Blast hits to 104 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G12430.1p  transcript_id AT3G12430.1  protein_id AT3G12430.1p  transcript_id AT3G12430.1  
At3g12440	chr3:003951199	0.0	C/3951199-3952260	AT3G12440.1  CDS  go_component intracellular|GO:0005622||IEA  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function 3 -5  exonuclease activity|GO:0008408||IEA  product extensin family protein  note extensin family protein; FUNCTIONS IN: 3 -5  exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; EXPRESSED IN: shoot apex, leaf whorl, embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), 3&apos;-5&apos; exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: 3 -5  exonuclease/ nucleic acid binding (TAIR:AT3G12430.1); Has 4047 Blast hits to 1488 proteins in 221 species: Archae - 0; Bacteria - 234; Metazoa - 1269; Fungi - 215; Plants - 1869; Viruses - 93; Other Eukaryotes - 367 (source: NCBI BLink).  protein_id AT3G12440.1p  transcript_id AT3G12440.1  protein_id AT3G12440.1p  transcript_id AT3G12440.1  
At3g12450	chr3:003953308	0.0	C/3953308-3953997	AT3G12450.1  pseudogenic_transcript  pseudo  function pseudogene of 3 -5  exonuclease containing protein  
At3g12460	chr3:003954695	0.0	C/3954695-3955423	AT3G12460.1  CDS  go_component intracellular|GO:0005622||IEA  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function 3 -5  exonuclease activity|GO:0008408||IEA  product 3 -5  exonuclease/ nucleic acid binding  note 3 -5  exonuclease/ nucleic acid binding; FUNCTIONS IN: 3 -5  exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), 3&apos;-5&apos; exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: 3 -5  exonuclease/ nucleic acid binding (TAIR:AT3G12430.1); Has 157 Blast hits to 147 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 34; Fungi - 4; Plants - 116; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G12460.1p  transcript_id AT3G12460.1  protein_id AT3G12460.1p  transcript_id AT3G12460.1  
At3g12470	chr3:003956123	0.0	C/3956123-3956785	AT3G12470.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: 3 -5  exonuclease/ nucleic acid binding (TAIR:AT3G12410.1); Has 115 Blast hits to 106 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G12470.1p  transcript_id AT3G12470.1  protein_id AT3G12470.1p  transcript_id AT3G12470.1  
At3g12480	chr3:003958065	0.0	W/3958065-3958097,3958835-3958907,3958999-3959092,3959411-3959545,3959634-3959691,3959790-3960278	AT3G12480.1  CDS  gene_syn NF-YC11, NUCLEAR FACTOR Y, SUBUNIT C11  gene NF-YC11  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11); DNA binding / transcription factor  note NUCLEAR FACTOR Y, SUBUNIT C11 (NF-YC11); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: DNA binding / sequence-specific DNA binding (TAIR:AT5G19490.1); Has 776 Blast hits to 776 proteins in 162 species: Archae - 0; Bacteria - 6; Metazoa - 273; Fungi - 211; Plants - 212; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT3G12480.1p  transcript_id AT3G12480.1  protein_id AT3G12480.1p  transcript_id AT3G12480.1  
At3g12490	chr3:003961676	0.0	C/3961676-3961777,3961211-3961430,3960946-3961091,3960523-3960660	AT3G12490.1  CDS  gene_syn ATCYSB, CYSTATIN B  gene ATCYSB  function Encodes a protein with cysteine proteinase inhibitor activity. Overexpression increases tolerance to abiotic stressors (i.e.salt,osmitic, cold stress).  go_process response to abiotic stimulus|GO:0009628|18523728|IMP  go_function cysteine-type endopeptidase inhibitor activity|GO:0004869|18523728|IDA  go_function cysteine-type endopeptidase inhibitor activity|GO:0004869||ISS  product cysteine protease inhibitor, putative / cystatin, putative  note CYSTATIN B (ATCYSB); FUNCTIONS IN: cysteine-type endopeptidase inhibitor activity; INVOLVED IN: response to abiotic stimulus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I25, cystatin, conserved site (InterPro:IPR018073), Proteinase inhibitor I25, cystatin (InterPro:IPR000010); BEST Arabidopsis thaliana protein match is: cysteine protease inhibitor, putative / cystatin, putative (TAIR:AT5G05110.1); Has 478 Blast hits to 456 proteins in 84 species: Archae - 0; Bacteria - 2; Metazoa - 21; Fungi - 0; Plants - 450; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G12490.1p  transcript_id AT3G12490.1  protein_id AT3G12490.1p  transcript_id AT3G12490.1  
At3g12490	chr3:003961676	0.0	C/3961676-3961876,3961211-3961430,3960946-3961091,3960523-3960660	AT3G12490.2  CDS  gene_syn ATCYSB, CYSTATIN B  gene ATCYSB  function Encodes a protein with cysteine proteinase inhibitor activity. Overexpression increases tolerance to abiotic stressors (i.e.salt,osmitic, cold stress).  go_component endomembrane system|GO:0012505||IEA  go_process response to abiotic stimulus|GO:0009628|18523728|IMP  go_function cysteine-type endopeptidase inhibitor activity|GO:0004869|18523728|IDA  go_function cysteine-type endopeptidase inhibitor activity|GO:0004869||ISS  product cysteine protease inhibitor, putative / cystatin, putative  note CYSTATIN B (ATCYSB); FUNCTIONS IN: cysteine-type endopeptidase inhibitor activity; INVOLVED IN: response to abiotic stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I25, cystatin, conserved site (InterPro:IPR018073), Proteinase inhibitor I25, cystatin (InterPro:IPR000010); BEST Arabidopsis thaliana protein match is: cysteine protease inhibitor, putative / cystatin, putative (TAIR:AT5G05110.1); Has 478 Blast hits to 456 proteins in 84 species: Archae - 0; Bacteria - 2; Metazoa - 21; Fungi - 0; Plants - 450; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G12490.2p  transcript_id AT3G12490.2  protein_id AT3G12490.2p  transcript_id AT3G12490.2  
At3g12502	chr3:003963124	0.0	W/3963124-3964222	AT3G12502.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT3G12500  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G12502.1  
At3g12500	chr3:003963525	0.0	C/3963525-3963945,3962501-3963048	AT3G12500.1  CDS  gene_syn ARABIDOPSIS THALIANA BASIC CHITINASE, ATHCHIB, B-CHI, CHI-B, PATHOGENESIS-RELATED 3, PR-3, PR3  gene ATHCHIB  function encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses.  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway|GO:0009871|7610160|IGI  go_process defense response to fungus|GO:0050832||IDA  go_function chitinase activity|GO:0004568||IDA  go_function chitinase activity|GO:0004568||ISS  product ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE); chitinase  note ARABIDOPSIS THALIANA BASIC CHITINASE (ATHCHIB); FUNCTIONS IN: chitinase activity; INVOLVED IN: response to cadmium ion, defense response to fungus, jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726), Chitin-binding, type 1 (InterPro:IPR001002); BEST Arabidopsis thaliana protein match is: chitinase, putative (TAIR:AT4G01700.1); Has 2031 Blast hits to 1792 proteins in 398 species: Archae - 0; Bacteria - 378; Metazoa - 37; Fungi - 152; Plants - 1350; Viruses - 10; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT3G12500.1p  transcript_id AT3G12500.1  protein_id AT3G12500.1p  transcript_id AT3G12500.1  
At3g12510	chr3:003967127	0.0	W/3967127-3967648	AT3G12510.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube, seed; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, E expanded cotyledon stage; Has 36 Blast hits to 36 proteins in 5 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G12510.1p  transcript_id AT3G12510.1  protein_id AT3G12510.1p  transcript_id AT3G12510.1  
At3g12520	chr3:003971595	0.0	C/3971595-3971891,3971376-3971424,3971070-3971271,3970813-3970981,3970648-3970713,3970453-3970560,3970242-3970349,3969971-3970036,3969771-3969831,3969503-3969630,3969332-3969373,3969105-3969221,3968896-3968947,3968662-3968800,3968486-3968574,3968326-3968402,3967976-3968239	AT3G12520.1  CDS  gene_syn SULFATE TRANSPORTER, SULTR4;2  gene SULTR4;2  function Encodes a sulfate transporter that in induced under sulfate limitation.  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process sulfate transport|GO:0008272||IEA  go_function sulfate transmembrane transporter activity|GO:0015116||ISS  product SULTR4;2; sulfate transmembrane transporter  note SULTR4;2; FUNCTIONS IN: sulfate transmembrane transporter activity; INVOLVED IN: sulfate transport, transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sulphate transporter (InterPro:IPR011547), Sulphate transporter/antisigma-factor antagonist STAS (InterPro:IPR002645), Sulphate anion transporter, conserved site (InterPro:IPR018045), Sulphate anion transporter (InterPro:IPR001902); BEST Arabidopsis thaliana protein match is: SULTR4;1; sulfate transmembrane transporter (TAIR:AT5G13550.1); Has 7882 Blast hits to 7824 proteins in 1228 species: Archae - 34; Bacteria - 4234; Metazoa - 990; Fungi - 280; Plants - 323; Viruses - 0; Other Eukaryotes - 2021 (source: NCBI BLink).  protein_id AT3G12520.1p  transcript_id AT3G12520.1  protein_id AT3G12520.1p  transcript_id AT3G12520.1  
At3g12530	chr3:003973663	0.0	C/3973663-3973728,3973459-3973573,3973259-3973358,3973138-3973168,3972964-3973053,3972712-3972864,3972604-3972624	AT3G12530.2  CDS  gene_syn PSF2  gene PSF2  go_component nucleus|GO:0005634||IEA  go_process DNA replication|GO:0006260||IEA  go_function molecular_function|GO:0003674||ND  product PSF2  note PSF2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA replication; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GINS complex, Psf2 component (InterPro:IPR007257), GINS complex, PSF2 component, subgroup (InterPro:IPR016906); Has 280 Blast hits to 275 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 103; Plants - 27; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT3G12530.2p  transcript_id AT3G12530.2  protein_id AT3G12530.2p  transcript_id AT3G12530.2  
At3g12530	chr3:003973817	0.0	C/3973817-3973864,3973663-3973737,3973459-3973573,3973259-3973358,3973138-3973168,3972964-3973053,3972712-3972864,3972604-3972624	AT3G12530.1  CDS  gene_syn PSF2  gene PSF2  go_component nucleus|GO:0005634||IEA  go_process DNA replication|GO:0006260||IEA  go_function molecular_function|GO:0003674||ND  product PSF2  note PSF2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA replication; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GINS complex, Psf2 component (InterPro:IPR007257), GINS complex, PSF2 component, subgroup (InterPro:IPR016906); Has 280 Blast hits to 275 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 103; Plants - 27; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT3G12530.1p  transcript_id AT3G12530.1  protein_id AT3G12530.1p  transcript_id AT3G12530.1  
At3g12540	chr3:003975246	0.0	W/3975246-3975362,3975438-3976165,3976252-3976351,3976425-3976484,3976561-3976647,3976724-3976831,3976930-3977247	AT3G12540.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G39690.1); Has 324 Blast hits to 322 proteins in 53 species: Archae - 3; Bacteria - 24; Metazoa - 32; Fungi - 0; Plants - 245; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT3G12540.1p  transcript_id AT3G12540.1  protein_id AT3G12540.1p  transcript_id AT3G12540.1  
At3g12545	chr3:003978195	0.0	C/3978195-3978294,3977550-3977821	AT3G12545.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product lipid transfer protein-related  note lipid transfer protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT5G38180.1); Has 42 Blast hits to 42 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G12545.1p  transcript_id AT3G12545.1  protein_id AT3G12545.1p  transcript_id AT3G12545.1  
At3g12550	chr3:003978669	0.0	W/3978669-3979044,3979158-3979697,3979826-3980007,3980090-3980179,3980268-3980546,3980738-3980947,3981142-3981372	AT3G12550.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product XH/XS domain-containing protein / XS zinc finger domain-containing protein  note XH/XS domain-containing protein / XS zinc finger domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Region of unknown function XS (InterPro:IPR005380), Region of unknown function XH (InterPro:IPR005379), Region of unknown function, putative Zinc finger, XS and XH (InterPro:IPR005381); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein / XS zinc finger domain-containing protein (TAIR:AT3G48670.2); Has 23408 Blast hits to 15451 proteins in 943 species: Archae - 218; Bacteria - 2032; Metazoa - 11697; Fungi - 1231; Plants - 587; Viruses - 80; Other Eukaryotes - 7563 (source: NCBI BLink).  protein_id AT3G12550.1p  transcript_id AT3G12550.1  protein_id AT3G12550.1p  transcript_id AT3G12550.1  
At3g12560	chr3:003984768	0.0	C/3984768-3984848,3983981-3984695,3983716-3983889,3983473-3983552,3983135-3983370,3982720-3983025,3982562-3982625,3982272-3982475	AT3G12560.1  CDS  gene_syn ATTBP2, TELOMERIC DNA-BINDING PROTEIN 2, TRF-LIKE 9, TRFL9  gene TRFL9  function Encodes a telomeric DNA-binding protein.  go_component nucleus|GO:0005634||ISS  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function DNA bending activity|GO:0008301|15688221|IDA  go_function telomeric DNA binding|GO:0042162|15688221|IDA  product TRFL9 (TRF-LIKE 9); DNA bending/ DNA binding / telomeric DNA binding  note TRF-LIKE 9 (TRFL9); FUNCTIONS IN: DNA bending activity, DNA binding, telomeric DNA binding; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TBP1 (TELOMERIC DNA BINDING PROTEIN 1); DNA binding / double-stranded telomeric DNA binding (TAIR:AT5G13820.1); Has 182 Blast hits to 179 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 4; Plants - 158; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT3G12560.1p  transcript_id AT3G12560.1  protein_id AT3G12560.1p  transcript_id AT3G12560.1  
At3g12570	chr3:003989407	0.0	W/3989407-3990876	AT3G12570.1  CDS  gene_syn FYD  gene FYD  go_component chloroplast envelope|GO:0009941|12938931|IDA  product FYD  note FYD; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: SLT1 (sodium- and lithium-tolerant 1) (TAIR:AT2G37570.1); Has 56 Blast hits to 56 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G12570.1p  transcript_id AT3G12570.1  protein_id AT3G12570.1p  transcript_id AT3G12570.1  
At3g12570	chr3:003989407	0.0	W/3989407-3990876	AT3G12570.2  CDS  gene_syn FYD  gene FYD  go_component chloroplast envelope|GO:0009941|12938931|IDA  product FYD  note FYD; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: SLT1 (sodium- and lithium-tolerant 1) (TAIR:AT2G37570.1); Has 56 Blast hits to 56 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G12570.2p  transcript_id AT3G12570.2  protein_id AT3G12570.2p  transcript_id AT3G12570.2  
At3g12570	chr3:003989407	0.0	W/3989407-3990876	AT3G12570.3  CDS  gene_syn FYD  gene FYD  product FYD  note FYD; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: SLT1 (sodium- and lithium-tolerant 1) (TAIR:AT2G37570.1); Has 56 Blast hits to 56 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G12570.3p  transcript_id AT3G12570.3  protein_id AT3G12570.3p  transcript_id AT3G12570.3  
At3g12570	chr3:003989407	0.0	W/3989407-3990876	AT3G12570.4  CDS  gene_syn FYD  gene FYD  product FYD  note FYD; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: SLT1 (sodium- and lithium-tolerant 1) (TAIR:AT2G37570.1); Has 56 Blast hits to 56 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G12570.4p  transcript_id AT3G12570.4  protein_id AT3G12570.4p  transcript_id AT3G12570.4  
At3g12580	chr3:003993476	0.0	C/3993476-3993689,3991487-3993225	AT3G12580.1  CDS  gene_syn HSP70, heat shock protein 70  gene HSP70  go_component cell wall|GO:0005618|16287169|IDA  go_component mitochondrion|GO:0005739|17137349|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ATP binding|GO:0005524|17137349|IDA  go_component cytosol|GO:0005829|11402207|TAS  go_process protein folding|GO:0006457|11402207|TAS  go_process response to heat|GO:0009408|11402207|IEP  go_process response to heat|GO:0009408|17059409|IEP  go_process response to virus|GO:0009615|15805473|IEP  go_process response to bacterium|GO:0009617|18065690|IEP  go_process response to high light intensity|GO:0009644|17059409|IEP  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_process response to hydrogen peroxide|GO:0042542|17059409|IEP  product HSP70 (heat shock protein 70); ATP binding  note heat shock protein 70 (HSP70); FUNCTIONS IN: ATP binding; INVOLVED IN: in 8 processes; LOCATED IN: cytosol, mitochondrion, cell wall, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1); ATP binding (TAIR:AT5G02500.1); Has 24865 Blast hits to 24554 proteins in 3102 species: Archae - 103; Bacteria - 9662; Metazoa - 3184; Fungi - 1196; Plants - 727; Viruses - 243; Other Eukaryotes - 9750 (source: NCBI BLink).  protein_id AT3G12580.1p  transcript_id AT3G12580.1  protein_id AT3G12580.1p  transcript_id AT3G12580.1  
At3g12587	chr3:003994586	0.0	C/3994586-3994699	AT3G12587.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G02502.1); Has 19 Blast hits to 19 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G12587.1p  transcript_id AT3G12587.1  protein_id AT3G12587.1p  transcript_id AT3G12587.1  
At3g12585	chr3:003995097	0.0	C/3995097-3995169	AT3G12585.1  tRNA  gene_syn 60748.TRNA-ARG-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: CCG)  transcript_id AT3G12585.1  
At3g12590	chr3:004003433	0.0	C/4003433-4003657,4002860-4002939,4002365-4002415,4001593-4002081,4001157-4001414,4000556-4000621,3999958-4000137,3999778-3999829,3999409-3999693,3999214-3999324,3998809-3999006,3998418-3998693,3997681-3998298,3997023-3997483,3996865-3996925,3996686-3996754,3996473-3996547	AT3G12590.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 26 Blast hits to 25 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G12590.1p  transcript_id AT3G12590.1  protein_id AT3G12590.1p  transcript_id AT3G12590.1  
At3g12600	chr3:004004676	0.0	W/4004676-4004684,4004845-4004879,4005356-4005470,4005547-4005630,4005723-4005995	AT3G12600.2  CDS  gene_syn Arabidopsis thaliana Nudix hydrolase homolog 16, atnudt16  gene atnudt16  go_function hydrolase activity|GO:0016787||IEA  go_function hydrolase activity|GO:0016787||ISS  product atnudt16 (Arabidopsis thaliana Nudix hydrolase homolog 16); hydrolase  note Arabidopsis thaliana Nudix hydrolase homolog 16 (atnudt16); FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), NUDIX hydrolase, core (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: atnudt12 (Arabidopsis thaliana Nudix hydrolase homolog 12); hydrolase (TAIR:AT1G12880.1); Has 764 Blast hits to 762 proteins in 210 species: Archae - 0; Bacteria - 257; Metazoa - 210; Fungi - 81; Plants - 132; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT3G12600.2p  transcript_id AT3G12600.2  protein_id AT3G12600.2p  transcript_id AT3G12600.2  
At3g12600	chr3:004004809	0.0	W/4004809-4004879,4005356-4005470,4005547-4005630,4005723-4005995	AT3G12600.1  CDS  gene_syn Arabidopsis thaliana Nudix hydrolase homolog 16, atnudt16  gene atnudt16  go_function hydrolase activity|GO:0016787||IEA  go_function hydrolase activity|GO:0016787||ISS  product atnudt16 (Arabidopsis thaliana Nudix hydrolase homolog 16); hydrolase  note Arabidopsis thaliana Nudix hydrolase homolog 16 (atnudt16); FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), NUDIX hydrolase, core (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: atnudt12 (Arabidopsis thaliana Nudix hydrolase homolog 12); hydrolase (TAIR:AT1G12880.1); Has 764 Blast hits to 762 proteins in 210 species: Archae - 0; Bacteria - 257; Metazoa - 210; Fungi - 81; Plants - 132; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT3G12600.1p  transcript_id AT3G12600.1  protein_id AT3G12600.1p  transcript_id AT3G12600.1  
At3g12610	chr3:004006661	0.0	C/4006661-4007779	AT3G12610.1  CDS  gene_syn DNA-DAMAGE REPAIR/TOLERATION 100, DRT100  gene DRT100  function Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes.  go_component chloroplast|GO:0009507|1518832|ISS  go_process signal transduction|GO:0007165|11751054|IC  go_process response to UV|GO:0009411|1518832|IGI  go_process UV protection|GO:0009650|1518831|IGI  go_process response to chemical stimulus|GO:0042221|1518832|IGI  go_process response to drug|GO:0042493|1518832|IGI  go_function nucleotide binding|GO:0000166|1518832|ISS  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100); nucleotide binding / protein binding  note DNA-DAMAGE REPAIR/TOLERATION 100 (DRT100); FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: response to UV, response to chemical stimulus, signal transduction, UV protection, response to drug; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT3G20820.1); Has 51417 Blast hits to 18265 proteins in 734 species: Archae - 21; Bacteria - 2576; Metazoa - 16531; Fungi - 493; Plants - 28439; Viruses - 0; Other Eukaryotes - 3357 (source: NCBI BLink).  protein_id AT3G12610.1p  transcript_id AT3G12610.1  protein_id AT3G12610.1p  transcript_id AT3G12610.1  
At3g12620	chr3:004010669	0.0	C/4010669-4010993,4010212-4010579,4009825-4010061,4009510-4009737	AT3G12620.1  CDS  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C family protein / PP2C family protein  note protein phosphatase 2C family protein / PP2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: serine/threonine protein phosphatase 2C (PP2C6) (TAIR:AT3G55050.2); Has 3612 Blast hits to 3610 proteins in 218 species: Archae - 0; Bacteria - 8; Metazoa - 1241; Fungi - 382; Plants - 1246; Viruses - 2; Other Eukaryotes - 733 (source: NCBI BLink).  protein_id AT3G12620.1p  transcript_id AT3G12620.1  protein_id AT3G12620.1p  transcript_id AT3G12620.1  
At3g12620	chr3:004010669	0.0	C/4010669-4010993,4010212-4010579,4009825-4010061,4009510-4009737	AT3G12620.2  CDS  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C family protein / PP2C family protein  note protein phosphatase 2C family protein / PP2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: serine/threonine protein phosphatase 2C (PP2C6) (TAIR:AT3G55050.2); Has 3612 Blast hits to 3610 proteins in 218 species: Archae - 0; Bacteria - 8; Metazoa - 1241; Fungi - 382; Plants - 1246; Viruses - 2; Other Eukaryotes - 733 (source: NCBI BLink).  protein_id AT3G12620.2p  transcript_id AT3G12620.2  protein_id AT3G12620.2p  transcript_id AT3G12620.2  
At3g12630	chr3:004012707	0.0	W/4012707-4013189	AT3G12630.1  CDS  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product zinc finger (AN1-like) family protein  note zinc finger (AN1-like) family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: zinc finger (AN1-like) family protein (TAIR:AT1G51200.2); Has 750 Blast hits to 747 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 367; Fungi - 2; Plants - 264; Viruses - 6; Other Eukaryotes - 111 (source: NCBI BLink).  protein_id AT3G12630.1p  transcript_id AT3G12630.1  protein_id AT3G12630.1p  transcript_id AT3G12630.1  
At3g12640	chr3:004014455	0.0	W/4014455-4014589,4014770-4014870,4014952-4015180,4015253-4015303,4015606-4016430,4016637-4016691,4016845-4016906,4017002-4017108,4017207-4017294,4017412-4017675	AT3G12640.1  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function RNA binding|GO:0003723||ISS  product RNA binding / nucleic acid binding / nucleotide binding  note RNA binding / nucleic acid binding / nucleotide binding; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT2G24350.1); Has 5419 Blast hits to 5243 proteins in 418 species: Archae - 0; Bacteria - 543; Metazoa - 2418; Fungi - 873; Plants - 1071; Viruses - 1; Other Eukaryotes - 513 (source: NCBI BLink).  protein_id AT3G12640.1p  transcript_id AT3G12640.1  protein_id AT3G12640.1p  transcript_id AT3G12640.1  
At3g12650	chr3:004017881	0.0	C/4017881-4018597	AT3G12650.1  CDS  go_component mitochondrion|GO:0005739|15276431|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 14 Blast hits to 14 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G12650.1p  transcript_id AT3G12650.1  protein_id AT3G12650.1p  transcript_id AT3G12650.1  
At3g12660	chr3:004019060	0.0	W/4019060-4019827	AT3G12660.1  CDS  gene_syn FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 14 PRECURSOR, FLA14, T2E22.3  gene FLA14  function fasciclin-like arabinogalactan-protein, family (FLA14)  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function molecular_function|GO:0003674||ND  product FLA14 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 14 PRECURSOR)  note FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 14 PRECURSOR (FLA14); FUNCTIONS IN: molecular_function unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FLA10 (TAIR:AT3G60900.1); Has 186 Blast hits to 180 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 178; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G12660.1p  transcript_id AT3G12660.1  protein_id AT3G12660.1p  transcript_id AT3G12660.1  
At3g12670	chr3:004023969	0.0	C/4023969-4024086,4023726-4023805,4023555-4023641,4023429-4023479,4023225-4023342,4023090-4023146,4022926-4022990,4022759-4022842,4022615-4022665,4022433-4022495,4022283-4022326,4022083-4022152,4021929-4021991,4021702-4021791,4021575-4021613,4021274-4021501,4021100-4021185,4020970-4021018,4020802-4020882,4020597-4020690,4020351-4020508	AT3G12670.1  CDS  gene_syn emb2742, embryo defective 2742  gene emb2742  go_component endomembrane system|GO:0012505||IEA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function catalytic activity|GO:0003824||IEA  go_function CTP synthase activity|GO:0003883||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function CTP synthase activity|GO:0003883||ISS  product emb2742 (embryo defective 2742); CTP synthase/ catalytic  note embryo defective 2742 (emb2742); FUNCTIONS IN: CTP synthase activity, catalytic activity; INVOLVED IN: embryonic development ending in seed dormancy, response to cadmium ion; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), CTP synthase (InterPro:IPR004468), CTP synthase, N-terminal (InterPro:IPR017456), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: CTP synthase, putative / UTP--ammonia ligase, putative (TAIR:AT1G30820.1); Has 8034 Blast hits to 8003 proteins in 1726 species: Archae - 146; Bacteria - 2972; Metazoa - 226; Fungi - 172; Plants - 87; Viruses - 0; Other Eukaryotes - 4431 (source: NCBI BLink).  protein_id AT3G12670.1p  transcript_id AT3G12670.1  protein_id AT3G12670.1p  transcript_id AT3G12670.1  
At3g12680	chr3:004028609	0.0	C/4028609-4028999,4027597-4027844,4027146-4027202,4026982-4027053,4026769-4026825,4026469-4026666,4026251-4026288,4026107-4026153,4025888-4026006,4025748-4025801,4025512-4025652,4025276-4025428	AT3G12680.1  CDS  gene_syn ENHANCER OF AG-4 1, HUA1, T2E22.1  gene HUA1  function Member of the floral homeotic AGAMOUS pathway.  go_component nucleus|GO:0005634|11595801|TAS  go_component nucleus|GO:0005634|12530963|IDA  go_process cell fate determination|GO:0001709|10198637|TAS  go_function RNA binding|GO:0003723|11595801|ISS  go_function RNA binding|GO:0003723|12530963|IDA  product HUA1 (ENHANCER OF AG-4 1); RNA binding  note ENHANCER OF AG-4 1 (HUA1); FUNCTIONS IN: RNA binding; INVOLVED IN: cell fate determination; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein (TAIR:AT2G47850.3); Has 1289 Blast hits to 527 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 298; Fungi - 69; Plants - 839; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT3G12680.1p  transcript_id AT3G12680.1  protein_id AT3G12680.1p  transcript_id AT3G12680.1  
At3g12685	chr3:004030100	0.0	C/4030100-4030261,4029886-4030020,4029759-4029796,4029610-4029676,4029245-4029484	AT3G12685.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase/vanadium-dependent haloperoxidase related (InterPro:IPR003832); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24350.1); Has 607 Blast hits to 607 proteins in 199 species: Archae - 0; Bacteria - 356; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).  protein_id AT3G12685.1p  transcript_id AT3G12685.1  protein_id AT3G12685.1p  transcript_id AT3G12685.1  
At3g12690	chr3:004031538	0.0	C/4031538-4032400,4030596-4031466	AT3G12690.1  CDS  gene_syn AGC KINASE 1.5, AGC1.5  gene AGC1.5  function Encodes a putative serine/threonine kinase It is expressed specifically in pollen and appears to function redundantly with AGC1.7 to regulate polarized growth of pollen tubes.  go_component chloroplast|GO:0009507||IEA  go_process unidimensional cell growth|GO:0009826|19144004|IGI  go_process pollen tube growth|GO:0009860|19144004|IGI  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product AGC1.5 (AGC KINASE 1.5); kinase  note AGC KINASE 1.5 (AGC1.5); FUNCTIONS IN: kinase activity; INVOLVED IN: pollen tube growth, unidimensional cell growth; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: AGC1.7 (AGC KINASE 1.7); kinase (TAIR:AT1G79250.1); Has 82579 Blast hits to 70462 proteins in 2619 species: Archae - 29; Bacteria - 7538; Metazoa - 36764; Fungi - 8282; Plants - 12373; Viruses - 336; Other Eukaryotes - 17257 (source: NCBI BLink).  protein_id AT3G12690.1p  transcript_id AT3G12690.1  protein_id AT3G12690.1p  transcript_id AT3G12690.1  
At3g12690	chr3:004031538	0.0	C/4031538-4032400,4030596-4031466	AT3G12690.2  CDS  gene_syn AGC KINASE 1.5, AGC1.5  gene AGC1.5  function Encodes a putative serine/threonine kinase It is expressed specifically in pollen and appears to function redundantly with AGC1.7 to regulate polarized growth of pollen tubes.  go_component chloroplast|GO:0009507||IEA  go_process unidimensional cell growth|GO:0009826|19144004|IGI  go_process pollen tube growth|GO:0009860|19144004|IGI  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product AGC1.5 (AGC KINASE 1.5); kinase  note AGC KINASE 1.5 (AGC1.5); FUNCTIONS IN: kinase activity; INVOLVED IN: pollen tube growth, unidimensional cell growth; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: AGC1.7 (AGC KINASE 1.7); kinase (TAIR:AT1G79250.1); Has 82579 Blast hits to 70462 proteins in 2619 species: Archae - 29; Bacteria - 7538; Metazoa - 36764; Fungi - 8282; Plants - 12373; Viruses - 336; Other Eukaryotes - 17257 (source: NCBI BLink).  protein_id AT3G12690.2p  transcript_id AT3G12690.2  protein_id AT3G12690.2p  transcript_id AT3G12690.2  
At3g12690	chr3:004031538	0.0	C/4031538-4032400,4030596-4031466	AT3G12690.3  CDS  gene_syn AGC KINASE 1.5, AGC1.5  gene AGC1.5  function Encodes a putative serine/threonine kinase It is expressed specifically in pollen and appears to function redundantly with AGC1.7 to regulate polarized growth of pollen tubes.  go_component chloroplast|GO:0009507||IEA  go_process unidimensional cell growth|GO:0009826|19144004|IGI  go_process pollen tube growth|GO:0009860|19144004|IGI  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product AGC1.5 (AGC KINASE 1.5); kinase  note AGC KINASE 1.5 (AGC1.5); FUNCTIONS IN: kinase activity; INVOLVED IN: pollen tube growth, unidimensional cell growth; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: AGC1.7 (AGC KINASE 1.7); kinase (TAIR:AT1G79250.1); Has 82579 Blast hits to 70462 proteins in 2619 species: Archae - 29; Bacteria - 7538; Metazoa - 36764; Fungi - 8282; Plants - 12373; Viruses - 336; Other Eukaryotes - 17257 (source: NCBI BLink).  protein_id AT3G12690.3p  transcript_id AT3G12690.3  protein_id AT3G12690.3p  transcript_id AT3G12690.3  
At3g12700	chr3:004037136	0.0	W/4037136-4037704,4037997-4038058,4038227-4038387	AT3G12700.2  CDS  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_component cellular_component|GO:0005575||ND  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT1G31450.1).  protein_id AT3G12700.2p  transcript_id AT3G12700.2  protein_id AT3G12700.2p  transcript_id AT3G12700.2  
At3g12700	chr3:004037136	0.0	W/4037136-4037704,4038227-4039043	AT3G12700.1  CDS  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_component cellular_component|GO:0005575||ND  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: chloroplast nucleoid DNA-binding protein-related (TAIR:AT3G25700.1); Has 2505 Blast hits to 2494 proteins in 272 species: Archae - 0; Bacteria - 0; Metazoa - 813; Fungi - 345; Plants - 1184; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).  protein_id AT3G12700.1p  transcript_id AT3G12700.1  protein_id AT3G12700.1p  transcript_id AT3G12700.1  
At3g12710	chr3:004041435	0.0	C/4041435-4041828,4041154-4041211,4040572-4041058	AT3G12710.1  CDS  go_process DNA repair|GO:0006281||IEA  go_process base-excision repair|GO:0006284||IEA  go_function catalytic activity|GO:0003824||IEA  go_function DNA-3-methyladenine glycosylase I activity|GO:0008725||IEA  go_process DNA repair|GO:0006281||ISS  go_function DNA-3-methyladenine glycosylase I activity|GO:0008725||ISS  product methyladenine glycosylase family protein  note methyladenine glycosylase family protein; FUNCTIONS IN: DNA-3-methyladenine glycosylase I activity, catalytic activity; INVOLVED IN: DNA repair, base-excision repair; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Methyladenine glycosylase (InterPro:IPR005019); BEST Arabidopsis thaliana protein match is: methyladenine glycosylase family protein (TAIR:AT5G44680.1); Has 1956 Blast hits to 1956 proteins in 800 species: Archae - 7; Bacteria - 1544; Metazoa - 4; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 318 (source: NCBI BLink).  protein_id AT3G12710.1p  transcript_id AT3G12710.1  protein_id AT3G12710.1p  transcript_id AT3G12710.1  
At3g12720	chr3:004044360	0.0	C/4044360-4044522,4043407-4044167	AT3G12720.1  CDS  gene_syn ATMYB67, ATY53, MBK21.26, MYB DOMAIN PROTEIN 67  gene ATMYB67  function Member of the R2R3 factor gene family.  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product ATMYB67 (MYB DOMAIN PROTEIN 67); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 67 (ATMYB67); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: ATMYB86 (MYB DOMAIN PROTEIN 86); specific transcriptional repressor/ transcription repressor (TAIR:AT5G26660.1); Has 6285 Blast hits to 5870 proteins in 352 species: Archae - 0; Bacteria - 2; Metazoa - 570; Fungi - 322; Plants - 3745; Viruses - 3; Other Eukaryotes - 1643 (source: NCBI BLink).  protein_id AT3G12720.1p  transcript_id AT3G12720.1  protein_id AT3G12720.1p  transcript_id AT3G12720.1  
At3g12730	chr3:004048215	0.0	C/4048215-4048356,4048054-4048130,4047858-4047933,4047682-4047754,4047234-4047573	AT3G12730.1  CDS  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: APL (ALTERED PHLOEM DEVELOPMENT); transcription factor/ transcription regulator (TAIR:AT1G79430.2); Has 897 Blast hits to 894 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 889; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT3G12730.1p  transcript_id AT3G12730.1  protein_id AT3G12730.1p  transcript_id AT3G12730.1  
At3g12740	chr3:004049739	0.0	W/4049739-4049829,4050038-4050096,4050194-4050268,4050343-4050456,4050550-4050620,4050740-4051037,4051130-4051419,4051507-4051561	AT3G12740.1  CDS  gene_syn ALA-INTERACTING SUBUNIT 1, ALIS1  gene ALIS1  function Physically interacts with ALA3, and is required for the phospholipid translocase activity of ALA3.  go_component Golgi apparatus|GO:0005794|18344284|IDA  go_component membrane|GO:0016020||ISS  go_function phospholipid transporter activity|GO:0005548|18344284|IDA  product ALIS1 (ALA-INTERACTING SUBUNIT 1); phospholipid transporter  note ALA-INTERACTING SUBUNIT 1 (ALIS1); FUNCTIONS IN: phospholipid transporter activity; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF284, transmembrane eukaryotic (InterPro:IPR005045); BEST Arabidopsis thaliana protein match is: LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (TAIR:AT1G54320.1); Has 647 Blast hits to 647 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 217; Fungi - 139; Plants - 105; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).  protein_id AT3G12740.1p  transcript_id AT3G12740.1  protein_id AT3G12740.1p  transcript_id AT3G12740.1  
At3g12750	chr3:004052401	0.0	C/4052401-4053156,4051950-4052261	AT3G12750.1  CDS  gene_syn ZINC TRANSPORTER 1 PRECURSOR, ZIP1  gene ZIP1  function A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root.  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process zinc ion transport|GO:0006829|11500563|TAS  go_process zinc ion transport|GO:0006829||ISS  go_process response to zinc ion|GO:0010043||NAS  go_function zinc ion transmembrane transporter activity|GO:0005385|11500563|TAS  go_function zinc ion transmembrane transporter activity|GO:0005385|9618566|IDA  go_function zinc ion transmembrane transporter activity|GO:0005385||ISS  product ZIP1 (ZINC TRANSPORTER 1 PRECURSOR); zinc ion transmembrane transporter  note ZINC TRANSPORTER 1 PRECURSOR (ZIP1); FUNCTIONS IN: zinc ion transmembrane transporter activity; INVOLVED IN: response to zinc ion, zinc ion transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal and plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: ZIP5; cation transmembrane transporter/ metal ion transmembrane transporter (TAIR:AT1G05300.1); Has 1466 Blast hits to 1355 proteins in 202 species: Archae - 0; Bacteria - 77; Metazoa - 502; Fungi - 400; Plants - 315; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink).  protein_id AT3G12750.1p  transcript_id AT3G12750.1  protein_id AT3G12750.1p  transcript_id AT3G12750.1  
At3g12760	chr3:004054963	0.0	W/4054963-4054965,4055165-4055226,4055366-4055505,4055587-4055645,4055729-4055752,4055872-4055954,4056056-4056120,4056235-4056284,4056375-4056476,4056561-4056620,4056722-4056826	AT3G12760.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Defective in cullin neddylation (InterPro:IPR014764), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Protein of unknown function DUF298 (InterPro:IPR005176), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15860.2); Has 628 Blast hits to 626 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 408; Fungi - 99; Plants - 64; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT3G12760.1p  transcript_id AT3G12760.1  protein_id AT3G12760.1p  transcript_id AT3G12760.1  
At3g12770	chr3:004059154	0.0	C/4059154-4059193,4057031-4059071,4056900-4056978	AT3G12770.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G23330.1); Has 15510 Blast hits to 5379 proteins in 183 species: Archae - 0; Bacteria - 10; Metazoa - 137; Fungi - 94; Plants - 14877; Viruses - 0; Other Eukaryotes - 392 (source: NCBI BLink).  protein_id AT3G12770.1p  transcript_id AT3G12770.1  protein_id AT3G12770.1p  transcript_id AT3G12770.1  
At3g12775	chr3:004059772	0.0	W/4059772-4059865,4059950-4060944	AT3G12775.1  CDS  go_process post-translational protein modification|GO:0043687||IEA  go_process regulation of protein metabolic process|GO:0051246||IEA  go_function small conjugating protein ligase activity|GO:0019787||IEA  go_component cellular_component|GO:0005575||ND  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product ubiquitin-conjugating enzyme family protein  note ubiquitin-conjugating enzyme family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, small conjugating protein ligase activity; INVOLVED IN: regulation of protein metabolic process, post-translational protein modification; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC26 (UBIQUITIN-CONJUGATING ENZYME 26); ubiquitin-protein ligase (TAIR:AT1G53020.1); Has 86 Blast hits to 84 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 81; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G12775.1p  transcript_id AT3G12775.1  protein_id AT3G12775.1p  transcript_id AT3G12775.1  
At3g12780	chr3:004062721	0.0	C/4062721-4063140,4062566-4062643,4062218-4062478,4061804-4062121,4061414-4061572,4061127-4061336	AT3G12780.1  CDS  gene_syn PGK1, PHOSPHOGLYCERATE KINASE 1  gene PGK1  function nuclear phosphoglycerate kinase (PGK1)  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleus|GO:0005634|14617066|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function phosphoglycerate kinase activity|GO:0004618||IEA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component stromule|GO:0010319|16923014|IDA  go_process glycolysis|GO:0006096||ISS  go_process response to cold|GO:0009409|14617066|IEP  go_process response to cold|GO:0009409|16923014|IEP  go_process peptidyl-cysteine S-nitrosylation|GO:0018119|18297659|IDA  go_function phosphoglycerate kinase activity|GO:0004618||ISS  product PGK1 (PHOSPHOGLYCERATE KINASE 1); phosphoglycerate kinase  note PHOSPHOGLYCERATE KINASE 1 (PGK1); FUNCTIONS IN: phosphoglycerate kinase activity; INVOLVED IN: response to cadmium ion, response to cold, glycolysis, peptidyl-cysteine S-nitrosylation; LOCATED IN: in 11 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate kinase, N-terminal (InterPro:IPR015824), Phosphoglycerate kinase (InterPro:IPR001576), Phosphoglycerate kinase, C-terminal (InterPro:IPR015901), Phosphoglycerate kinase, conserved site (InterPro:IPR015911); BEST Arabidopsis thaliana protein match is: phosphoglycerate kinase, putative (TAIR:AT1G56190.1); Has 8094 Blast hits to 8073 proteins in 1791 species: Archae - 166; Bacteria - 2876; Metazoa - 368; Fungi - 140; Plants - 376; Viruses - 0; Other Eukaryotes - 4168 (source: NCBI BLink).  protein_id AT3G12780.1p  transcript_id AT3G12780.1  protein_id AT3G12780.1p  transcript_id AT3G12780.1  
At3g12800	chr3:004064572	0.0	C/4064572-4064757,4064333-4064492,4064054-4064226,4063707-4063929,4063463-4063617	AT3G12800.1  CDS  gene_syn AT3G12790, DECR, SDRB, SHORT-CHAIN DEHYDROGENASE-REDUCTASE B  gene SDRB  go_component peroxisome|GO:0005777|17951448|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product SDRB (SHORT-CHAIN DEHYDROGENASE-REDUCTASE B); binding / catalytic/ oxidoreductase  note SHORT-CHAIN DEHYDROGENASE-REDUCTASE B (SDRB); FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: peroxisome, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: D2,D4-dienoyl-CoA reductase-related (TAIR:AT2G07640.1); Has 72870 Blast hits to 72725 proteins in 2181 species: Archae - 462; Bacteria - 41132; Metazoa - 3880; Fungi - 3552; Plants - 1537; Viruses - 2; Other Eukaryotes - 22305 (source: NCBI BLink).  protein_id AT3G12800.1p  transcript_id AT3G12800.1  protein_id AT3G12800.1p  transcript_id AT3G12800.1  
At3g12810	chr3:004065636	0.0	W/4065636-4065734,4065850-4065930,4066018-4066125,4066211-4066291,4066392-4066480,4066560-4066696,4066780-4066847,4067149-4067284,4067433-4067561,4067646-4067704,4067793-4067915,4068021-4068059,4068202-4068270,4068364-4068426,4068508-4071577,4071711-4071775,4071845-4071915,4072058-4072841,4073009-4073517,4073605-4073992	AT3G12810.1  CDS  gene_syn PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, PIE1, SRCAP, chr13  gene PIE1  function Encodes a protein similar to ATP-dependent, chromatin-remodeling proteins of the ISWI and SWI2/SNF2 family. Genetic analyses suggest that this gene is involved in multiple flowering pathways. Mutations in PIE1 results in suppression of FLC-mediated delay of flowering and causes early flowering in noninductive photoperiods independently of FLC. PIE1 is required for expression of FLC in the shoot apex but not in the root.Along with ARP6 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6).  go_component cell wall|GO:0005618|16287169|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_component SWI/SNF complex|GO:0016514|12837955|ISS  go_component chromatin remodeling complex|GO:0016585|17220196|IDA  go_process chromatin remodeling|GO:0006338|17220196|IMP  go_process negative regulation of flower development|GO:0009910|12837955|IGI  go_process defense response to bacterium|GO:0042742|17988222|IGI  go_process petal development|GO:0048441|12837955|IGI  go_process petal formation|GO:0048451|12837955|IGI  go_function DNA binding|GO:0003677||ISS  go_function helicase activity|GO:0004386||ISS  go_function ATP binding|GO:0005524||ISS  product PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1); ATP binding / DNA binding / helicase/ nucleic acid binding  note PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 (PIE1); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: petal formation, defense response to bacterium, negative regulation of flower development, petal development, chromatin remodeling; LOCATED IN: SWI/SNF complex, cell wall, chromatin remodeling complex; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: HSA (InterPro:IPR006562), HAS subgroup (InterPro:IPR013999), Helicase/SANT-associated, DNA binding (InterPro:IPR014012), SNF2-related (InterPro:IPR000330), MYB-like (InterPro:IPR017877), SANT, DNA-binding (InterPro:IPR001005), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: INO80 (INO80 ORTHOLOG); ATP binding / DNA binding / helicase/ nucleic acid binding (TAIR:AT3G57300.1); Has 31737 Blast hits to 19761 proteins in 1389 species: Archae - 133; Bacteria - 5394; Metazoa - 10053; Fungi - 5056; Plants - 1523; Viruses - 470; Other Eukaryotes - 9108 (source: NCBI BLink).  protein_id AT3G12810.1p  transcript_id AT3G12810.1  protein_id AT3G12810.1p  transcript_id AT3G12810.1  
At3g12820	chr3:004075476	0.0	C/4075476-4075614,4074860-4074989,4074328-4074778	AT3G12820.1  CDS  gene_syn AtMYB10, myb domain protein 10  gene AtMYB10  function Member of the R2R3 factor gene family.  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product AtMYB10 (myb domain protein 10); DNA binding / transcription factor  note myb domain protein 10 (AtMYB10); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: N-terminal protein myristoylation, regulation of transcription, DNA-dependent; EXPRESSED IN: shoot apex, sepal, hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB58 (MYB DOMAIN PROTEIN 58); DNA binding / transcription activator/ transcription factor (TAIR:AT1G16490.1); Has 6413 Blast hits to 5831 proteins in 359 species: Archae - 0; Bacteria - 0; Metazoa - 719; Fungi - 294; Plants - 3775; Viruses - 6; Other Eukaryotes - 1619 (source: NCBI BLink).  protein_id AT3G12820.1p  transcript_id AT3G12820.1  protein_id AT3G12820.1p  transcript_id AT3G12820.1  
At3g12830	chr3:004079117	0.0	C/4079117-4079515	AT3G12830.1  CDS  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT1G56150.1); Has 606 Blast hits to 604 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 605; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G12830.1p  transcript_id AT3G12830.1  protein_id AT3G12830.1p  transcript_id AT3G12830.1  
At3g12835	chr3:004083265	0.0	C/4083265-4083369	AT3G12835.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G12835.1p  transcript_id AT3G12835.1  protein_id AT3G12835.1p  transcript_id AT3G12835.1  
At3g12840	chr3:004085805	0.0	C/4085805-4086083	AT3G12840.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G12840.1p  transcript_id AT3G12840.1  protein_id AT3G12840.1p  transcript_id AT3G12840.1  
At3g12850	chr3:004090292	0.0	C/4090292-4090303,4089815-4090141,4089449-4089736,4089044-4089162,4088868-4088973,4088715-4088798,4088598-4088635,4088374-4088503	AT3G12850.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product COP9 signalosome complex-related / CSN complex-related  note COP9 signalosome complex-related / CSN complex-related; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: FUS6 (FUSCA 6) (TAIR:AT3G61140.1); Has 67 Blast hits to 67 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G12850.1p  transcript_id AT3G12850.1  protein_id AT3G12850.1p  transcript_id AT3G12850.1  
At3g12860	chr3:004091678	0.0	W/4091678-4091882,4092107-4092321,4092403-4092560,4092655-4092842,4092943-4093195,4093268-4093416,4093511-4093645,4093725-4093921	AT3G12860.1  CDS  go_process biological_process|GO:0008150||ND  product nucleolar protein Nop56, putative  note nucleolar protein Nop56, putative; INVOLVED IN: biological_process unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pre-mRNA processing ribonucleoprotein, binding region (InterPro:IPR002687), NOP5, N-terminal (InterPro:IPR012974), NOSIC (InterPro:IPR012976); BEST Arabidopsis thaliana protein match is: NOP56 (Arabidopsis homolog of nucleolar protein Nop56) (TAIR:AT1G56110.1); Has 10563 Blast hits to 5118 proteins in 400 species: Archae - 159; Bacteria - 170; Metazoa - 4794; Fungi - 1045; Plants - 545; Viruses - 16; Other Eukaryotes - 3834 (source: NCBI BLink).  protein_id AT3G12860.1p  transcript_id AT3G12860.1  protein_id AT3G12860.1p  transcript_id AT3G12860.1  
At3g12870	chr3:004094417	0.0	C/4094417-4095037	AT3G12870.1  CDS  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56120.1); Has 45 Blast hits to 45 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G12870.1p  transcript_id AT3G12870.1  protein_id AT3G12870.1p  transcript_id AT3G12870.1  
At3g12880	chr3:004095563	0.0	W/4095563-4096102	AT3G12880.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: pectinesterase inhibitor domain-containing protein (TAIR:AT1G56100.2); Has 25 Blast hits to 25 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G12880.1p  transcript_id AT3G12880.1  protein_id AT3G12880.1p  transcript_id AT3G12880.1  
At3g12890	chr3:004099223	0.0	W/4099223-4099570,4099674-4099805,4099902-4100066,4100167-4100277	AT3G12890.1  CDS  gene_syn ACTIVATOR OF SPOMIN::LUC2, ASML2  gene ASML2  function Encodes a protein belonging to a class of CCT (CONSTANS, CONSTANS-like, TOC1) domain proteins. The protein contains a 43 amino acid-long sequence with high homology to the CCT domain but does not have any B-box or GATA-type zinc finger domains. Functions as a transcriptional activator and regulates the expression of at least a subset of sugar-inducible genes.  go_component cellular_component|GO:0005575||ND  go_process sugar mediated signaling|GO:0010182|15960623|IMP  go_function transcription activator activity|GO:0016563|15960623|IDA  product ASML2 (ACTIVATOR OF SPOMIN::LUC2); transcription activator  note ACTIVATOR OF SPOMIN::LUC2 (ASML2); FUNCTIONS IN: transcription activator activity; INVOLVED IN: sugar mediated signaling; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33350.2); Has 819 Blast hits to 819 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 779; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT3G12890.1p  transcript_id AT3G12890.1  protein_id AT3G12890.1p  transcript_id AT3G12890.1  
At3g12900	chr3:004104576	0.0	W/4104576-4104836,4105062-4105303,4105442-4105766,4105867-4106112	AT3G12900.1  CDS  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT1G55290.1); Has 5953 Blast hits to 5932 proteins in 689 species: Archae - 0; Bacteria - 729; Metazoa - 127; Fungi - 654; Plants - 3069; Viruses - 0; Other Eukaryotes - 1374 (source: NCBI BLink).  protein_id AT3G12900.1p  transcript_id AT3G12900.1  protein_id AT3G12900.1p  transcript_id AT3G12900.1  
At3g12910	chr3:004109417	0.0	W/4109417-4109624,4109819-4110132,4110259-4110648	AT3G12910.1  CDS  gene_syn MGH6.1, MGH6.22, MGH6_1, MJM20.5  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac042 (Arabidopsis NAC domain containing protein 42); transcription factor (TAIR:AT2G43000.1); Has 1580 Blast hits to 1578 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1580; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G12910.1p  transcript_id AT3G12910.1  protein_id AT3G12910.1p  transcript_id AT3G12910.1  
At3g12915	chr3:004112999	0.0	W/4112999-4113026,4113273-4115708	AT3G12915.1  CDS  gene_syn MGH6.2  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product GTP binding / GTPase  note GTP binding / GTPase; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Elongation factor G, III and V (InterPro:IPR009022), Translation elongation factor EFG/EF2, domain IV (InterPro:IPR005517), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: LOS1; copper ion binding / translation elongation factor/ translation factor, nucleic acid binding (TAIR:AT1G56070.1).  protein_id AT3G12915.1p  transcript_id AT3G12915.1  protein_id AT3G12915.1p  transcript_id AT3G12915.1  
At3g12920	chr3:004123277	0.0	C/4123277-4123323,4122783-4123179,4122127-4122690	AT3G12920.1  CDS  go_component nucleus|GO:0005634|14617066|IDA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G79110.2); Has 1234 Blast hits to 1231 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 768; Fungi - 0; Plants - 306; Viruses - 33; Other Eukaryotes - 127 (source: NCBI BLink).  protein_id AT3G12920.1p  transcript_id AT3G12920.1  protein_id AT3G12920.1p  transcript_id AT3G12920.1  
At3g12930	chr3:004128465	0.0	W/4128465-4128704,4128869-4128995,4129090-4129228,4129311-4129399,4129495-4129616	AT3G12930.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Iojap-related protein (InterPro:IPR004394); Has 2517 Blast hits to 2517 proteins in 833 species: Archae - 0; Bacteria - 1551; Metazoa - 22; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 909 (source: NCBI BLink).  protein_id AT3G12930.1p  transcript_id AT3G12930.1  protein_id AT3G12930.1p  transcript_id AT3G12930.1  
At3g12940	chr3:004130868	0.0	C/4130868-4131912,4130328-4130705,4130242-4130243	AT3G12940.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19895.1); Has 39 Blast hits to 39 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G12940.1p  transcript_id AT3G12940.1  protein_id AT3G12940.1p  transcript_id AT3G12940.1  
At3g12950	chr3:004134429	0.0	C/4134429-4134818,4134196-4134345,4133870-4134110,4133291-4133791,4132798-4133192	AT3G12950.1  CDS  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product catalytic  note catalytic; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase, trypsin-like serine and cysteine (InterPro:IPR009003); BEST Arabidopsis thaliana protein match is: catalytic (TAIR:AT5G45030.2); Has 63 Blast hits to 63 proteins in 19 species: Archae - 0; Bacteria - 17; Metazoa - 0; Fungi - 2; Plants - 41; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G12950.1p  transcript_id AT3G12950.1  protein_id AT3G12950.1p  transcript_id AT3G12950.1  
At3g12955	chr3:004135659	0.0	C/4135659-4136078	AT3G12955.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive protein-related  note auxin-responsive protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: mitochondrion; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein-related (TAIR:AT1G72430.1); Has 53 Blast hits to 53 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G12955.1p  transcript_id AT3G12955.1  protein_id AT3G12955.1p  transcript_id AT3G12955.1  
At3g12960	chr3:004136546	0.0	W/4136546-4136806	AT3G12960.1  CDS  gene_syn MGH6.8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 33 Blast hits to 33 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G12960.1p  transcript_id AT3G12960.1  protein_id AT3G12960.1p  transcript_id AT3G12960.1  
At3g12965	chr3:004136961	0.0	C/4136961-4137674	AT3G12965.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G12965.1  
At3g12970	chr3:004141329	0.0	C/4141329-4142474	AT3G12970.1  CDS  gene_syn MGH6.10  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56020.1); Has 2528 Blast hits to 360 proteins in 79 species: Archae - 0; Bacteria - 41; Metazoa - 345; Fungi - 58; Plants - 61; Viruses - 6; Other Eukaryotes - 2017 (source: NCBI BLink).  protein_id AT3G12970.1p  transcript_id AT3G12970.1  protein_id AT3G12970.1p  transcript_id AT3G12970.1  
At3g12977	chr3:004143832	0.0	W/4143832-4144024,4144689-4144963,4145489-4145860	AT3G12977.1  CDS  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC1; transcription factor (TAIR:AT1G56010.2); Has 1643 Blast hits to 1641 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1639; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G12977.1p  transcript_id AT3G12977.1  protein_id AT3G12977.1p  transcript_id AT3G12977.1  
At3g12980	chr3:004146919	0.0	W/4146919-4147070,4147472-4147586,4147713-4147965,4148057-4148500,4148642-4150407,4150644-4150940,4151037-4151312,4151608-4151736,4151852-4152052,4152141-4152283,4152375-4152687,4152819-4152958,4153284-4153362,4153449-4153835,4154074-4154273,4154378-4154495	AT3G12980.1  CDS  gene_syn ATHPCAT4, HAC5, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 5, MGH6.20  gene HAC5  function Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates. No single prior lysine acetylation is sufficient to block HAC5 acetylation of the H3 or H4 peptides, suggesting that HAC5 can acetylate any of several lysines present in the peptides. Di-acetylation of both lysines 9 and 14 on the H3 peptide significantly reduces the level of incorporated radioactive acetylation catalyzed by HAC5, indicating that HAC5 may acetylate either lysine 9 or lysine 14.  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||IEA  go_process protein amino acid acetylation|GO:0006473|17144897|IMP  go_process flower development|GO:0009908|17144897|IGI  go_function histone acetyltransferase activity|GO:0004402|12466527|ISS  go_function histone acetyltransferase activity|GO:0004402||ISS  go_function H3/H4 histone acetyltransferase activity|GO:0004406|17877703|IDA  product HAC5; H3/H4 histone acetyltransferase/ histone acetyltransferase  note HAC5; FUNCTIONS IN: histone acetyltransferase activity, H3/H4 histone acetyltransferase activity; INVOLVED IN: flower development, protein amino acid acetylation; LOCATED IN: nucleus, intracellular; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, TAZ-type (InterPro:IPR000197), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, ZZ-type (InterPro:IPR000433), Zinc finger, C2H2-type (InterPro:IPR007087), Transcriptional coactivation (InterPro:IPR009255); BEST Arabidopsis thaliana protein match is: HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1); H3/H4 histone acetyltransferase/ histone acetyltransferase/ transcription cofactor (TAIR:AT1G79000.1); Has 1080 Blast hits to 804 proteins in 112 species: Archae - 0; Bacteria - 12; Metazoa - 519; Fungi - 34; Plants - 184; Viruses - 4; Other Eukaryotes - 327 (source: NCBI BLink).  protein_id AT3G12980.1p  transcript_id AT3G12980.1  protein_id AT3G12980.1p  transcript_id AT3G12980.1  
At3g12981	chr3:004154905	0.0	C/4154905-4156051	AT3G12981.1  pseudogenic_transcript  pseudo  function pseudogene of F-box family protein  
At3g12990	chr3:004156345	0.0	W/4156345-4156481,4156608-4156817,4156892-4156987,4157069-4157183,4157294-4157374,4157465-4157653,4157747-4157842	AT3G12990.1  CDS  gene_syn MGH6.11, RRP45a, Ribonuclease PH45a  gene RRP45a  function Encodes a 3 -5  exoribonuclease, partially redundant with CER7. Involved in epicuticular wax biosynthesis.  go_component nucleus|GO:0005634|17351114|IDA  go_component cytoplasm|GO:0005737|17351114|IDA  go_process RNA processing|GO:0006396||ISS  go_process wax biosynthetic process|GO:0010025|17351114|IGI  go_function 3 -5 -exoribonuclease activity|GO:0000175|17351114|IGI  go_function 3 -5 -exoribonuclease activity|GO:0000175|17351114|ISS  go_function 3 -5 -exoribonuclease activity|GO:0000175||ISS  go_function RNA binding|GO:0003723||ISS  product RRP45a (Ribonuclease PH45a); 3 -5 -exoribonuclease/ RNA binding  note Ribonuclease PH45a (RRP45a); FUNCTIONS IN: 3 -5 -exoribonuclease activity, RNA binding; INVOLVED IN: wax biosynthetic process, RNA processing; LOCATED IN: nucleus, cytoplasm; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 2 (InterPro:IPR015847), Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247); BEST Arabidopsis thaliana protein match is: CER7 (ECERIFERUM 7); 3 -5 -exoribonuclease/ RNA binding (TAIR:AT3G60500.2); Has 876 Blast hits to 876 proteins in 221 species: Archae - 168; Bacteria - 9; Metazoa - 294; Fungi - 128; Plants - 80; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink).  protein_id AT3G12990.1p  transcript_id AT3G12990.1  protein_id AT3G12990.1p  transcript_id AT3G12990.1  
At3g12990	chr3:004156345	0.0	W/4156345-4156481,4156608-4156817,4156892-4156987,4157069-4157183,4157294-4157374,4157465-4157653,4157747-4157842	AT3G12990.2  CDS  gene_syn MGH6.11, RRP45a, Ribonuclease PH45a  gene RRP45a  function Encodes a 3 -5  exoribonuclease, partially redundant with CER7. Involved in epicuticular wax biosynthesis.  go_component nucleus|GO:0005634|17351114|IDA  go_component cytoplasm|GO:0005737|17351114|IDA  go_process RNA processing|GO:0006396||ISS  go_process wax biosynthetic process|GO:0010025|17351114|IGI  go_function 3 -5 -exoribonuclease activity|GO:0000175|17351114|IGI  go_function 3 -5 -exoribonuclease activity|GO:0000175|17351114|ISS  go_function 3 -5 -exoribonuclease activity|GO:0000175||ISS  go_function RNA binding|GO:0003723||ISS  product RRP45a (Ribonuclease PH45a); 3 -5 -exoribonuclease/ RNA binding  note Ribonuclease PH45a (RRP45a); FUNCTIONS IN: 3 -5 -exoribonuclease activity, RNA binding; INVOLVED IN: wax biosynthetic process, RNA processing; LOCATED IN: nucleus, cytoplasm; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 2 (InterPro:IPR015847), Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247); BEST Arabidopsis thaliana protein match is: CER7 (ECERIFERUM 7); 3 -5 -exoribonuclease/ RNA binding (TAIR:AT3G60500.2); Has 876 Blast hits to 876 proteins in 221 species: Archae - 168; Bacteria - 9; Metazoa - 294; Fungi - 128; Plants - 80; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink).  protein_id AT3G12990.2p  transcript_id AT3G12990.2  protein_id AT3G12990.2p  transcript_id AT3G12990.2  
At3g13000	chr3:004160810	0.0	C/4160810-4160818,4160648-4160716,4160449-4160562,4160216-4160365,4159937-4160077,4159332-4159816,4159147-4159246,4158999-4159058,4158822-4158914,4158611-4158730,4158214-4158534	AT3G13000.1  CDS  gene_syn MGH6.15, MGH6_15  go_component vacuole|GO:0005773|15539469|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16750.1); Has 433 Blast hits to 428 proteins in 79 species: Archae - 0; Bacteria - 75; Metazoa - 28; Fungi - 3; Plants - 287; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT3G13000.1p  transcript_id AT3G13000.1  protein_id AT3G13000.1p  transcript_id AT3G13000.1  
At3g13000	chr3:004160961	0.0	C/4160961-4160989,4160810-4160876,4160648-4160716,4160449-4160562,4160216-4160365,4159937-4160077,4159332-4159816,4159147-4159246,4158999-4159058,4158822-4158914,4158611-4158730,4158214-4158534	AT3G13000.2  CDS  gene_syn MGH6.15, MGH6_15  go_component vacuole|GO:0005773|15539469|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16750.1); Has 435 Blast hits to 430 proteins in 80 species: Archae - 0; Bacteria - 75; Metazoa - 30; Fungi - 3; Plants - 287; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT3G13000.2p  transcript_id AT3G13000.2  protein_id AT3G13000.2p  transcript_id AT3G13000.2  
At3g13010	chr3:004163236	0.0	C/4163236-4164733,4162931-4163151	AT3G13010.1  CDS  go_function protein dimerization activity|GO:0046983||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product hAT dimerisation domain-containing protein  note hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Protein of unknown function DUF659 (InterPro:IPR007021), Protein of unknown function DUF1544 (InterPro:IPR011523); BEST Arabidopsis thaliana protein match is: hAT dimerisation domain-containing protein (TAIR:AT3G13020.1); Has 337 Blast hits to 326 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 334; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G13010.1p  transcript_id AT3G13010.1  protein_id AT3G13010.1p  transcript_id AT3G13010.1  
At3g13020	chr3:004167321	0.0	C/4167321-4168917,4166995-4167215	AT3G13020.1  CDS  gene_syn MGH6.14  go_function protein dimerization activity|GO:0046983||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product hAT dimerisation domain-containing protein  note hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Protein of unknown function DUF659 (InterPro:IPR007021), Protein of unknown function DUF1544 (InterPro:IPR011523); BEST Arabidopsis thaliana protein match is: hAT dimerisation domain-containing protein (TAIR:AT3G13030.3); Has 397 Blast hits to 373 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 2; Plants - 391; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G13020.1p  transcript_id AT3G13020.1  protein_id AT3G13020.1p  transcript_id AT3G13020.1  
At3g13030	chr3:004170037	0.0	C/4170037-4171417,4169675-4169928	AT3G13030.1  CDS  gene_syn MGH6.16  go_function protein dimerization activity|GO:0046983||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product hAT dimerisation domain-containing protein  note hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT dimerisation domain-containing protein (TAIR:AT3G13020.1); Has 392 Blast hits to 369 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 392; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G13030.1p  transcript_id AT3G13030.1  protein_id AT3G13030.1p  transcript_id AT3G13030.1  
At3g13030	chr3:004170037	0.0	C/4170037-4171417,4169675-4169928	AT3G13030.2  CDS  gene_syn MGH6.16  go_function protein dimerization activity|GO:0046983||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product hAT dimerisation domain-containing protein  note hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT dimerisation domain-containing protein (TAIR:AT3G13020.1); Has 392 Blast hits to 369 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 392; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G13030.2p  transcript_id AT3G13030.2  protein_id AT3G13030.2p  transcript_id AT3G13030.2  
At3g13030	chr3:004170037	0.0	C/4170037-4171417,4169675-4169928	AT3G13030.3  CDS  gene_syn MGH6.16  go_function protein dimerization activity|GO:0046983||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product hAT dimerisation domain-containing protein  note hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT dimerisation domain-containing protein (TAIR:AT3G13020.1).  protein_id AT3G13030.3p  transcript_id AT3G13030.3  protein_id AT3G13030.3p  transcript_id AT3G13030.3  
At3g13040	chr3:004173866	0.0	C/4173866-4174456,4173488-4173692,4173263-4173339,4173139-4173178,4172952-4173024,4172793-4172862,4172415-4172708	AT3G13040.1  CDS  gene_syn MGH6.22  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: PHR1 (PHOSPHATE STARVATION RESPONSE 1); transcription factor (TAIR:AT4G28610.1); Has 1402 Blast hits to 1356 proteins in 112 species: Archae - 2; Bacteria - 14; Metazoa - 251; Fungi - 38; Plants - 910; Viruses - 0; Other Eukaryotes - 187 (source: NCBI BLink).  protein_id AT3G13040.1p  transcript_id AT3G13040.1  protein_id AT3G13040.1p  transcript_id AT3G13040.1  
At3g13040	chr3:004173866	0.0	C/4173866-4174456,4173488-4173692,4173263-4173339,4173139-4173178,4172952-4173024,4172793-4172862,4172415-4172708	AT3G13040.2  CDS  gene_syn MGH6.22  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: PHR1 (PHOSPHATE STARVATION RESPONSE 1); transcription factor (TAIR:AT4G28610.1); Has 1402 Blast hits to 1356 proteins in 112 species: Archae - 2; Bacteria - 14; Metazoa - 251; Fungi - 38; Plants - 910; Viruses - 0; Other Eukaryotes - 187 (source: NCBI BLink).  protein_id AT3G13040.2p  transcript_id AT3G13040.2  protein_id AT3G13040.2p  transcript_id AT3G13040.2  
At3g13050	chr3:004176866	0.0	W/4176866-4177134,4177445-4177682,4177769-4178309,4178414-4178868	AT3G13050.1  CDS  gene_syn MGH6.18  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product transporter-related  note transporter-related; FUNCTIONS IN: carbohydrate transmembrane transporter activity, transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: AtOCT4 (Arabidopsis thaliana ORGANIC CATION/CARNITINE TRANSPORTER4); carbohydrate transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT3G20660.1); Has 24061 Blast hits to 23627 proteins in 1387 species: Archae - 383; Bacteria - 12067; Metazoa - 4488; Fungi - 4369; Plants - 1324; Viruses - 0; Other Eukaryotes - 1430 (source: NCBI BLink).  protein_id AT3G13050.1p  transcript_id AT3G13050.1  protein_id AT3G13050.1p  transcript_id AT3G13050.1  
At3g13060	chr3:004180625	0.0	W/4180625-4180664,4181097-4181134,4181222-4181399,4181626-4181702,4181784-4182257,4182368-4182913,4182995-4183207,4183294-4183632	AT3G13060.2  CDS  gene_syn ECT5, MGH6.21  gene ECT5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note ECT5; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: YT521-B-like protein (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: ECT2; protein binding (TAIR:AT3G13460.1); Has 1007 Blast hits to 965 proteins in 147 species: Archae - 0; Bacteria - 8; Metazoa - 528; Fungi - 103; Plants - 235; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).  protein_id AT3G13060.2p  transcript_id AT3G13060.2  protein_id AT3G13060.2p  transcript_id AT3G13060.2  
At3g13060	chr3:004180625	0.0	W/4180625-4180664,4181097-4181134,4181222-4181399,4181626-4181702,4181784-4182257,4182368-4182913,4182995-4183297	AT3G13060.1  CDS  gene_syn ECT5, MGH6.21  gene ECT5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note ECT5; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: YT521-B-like protein (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: ECT2; protein binding (TAIR:AT3G13460.1); Has 994 Blast hits to 952 proteins in 145 species: Archae - 0; Bacteria - 8; Metazoa - 526; Fungi - 103; Plants - 230; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).  protein_id AT3G13060.1p  transcript_id AT3G13060.1  protein_id AT3G13060.1p  transcript_id AT3G13060.1  
At3g13061	chr3:004183099	0.0	C/4183099-4183884	AT3G13061.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT3G13060  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G13061.1  
At3g13062	chr3:004184777	0.0	W/4184777-4185009,4185211-4185358,4185464-4185724,4185927-4186008,4186168-4186364,4186505-4186787,4187150-4187268	AT3G13062.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55960.1); Has 235 Blast hits to 235 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT3G13062.2p  transcript_id AT3G13062.2  protein_id AT3G13062.2p  transcript_id AT3G13062.2  
At3g13062	chr3:004184777	0.0	W/4184777-4185009,4185211-4185358,4185464-4185724,4185927-4186008,4186168-4186364,4186505-4186795	AT3G13062.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55960.1); Has 235 Blast hits to 235 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT3G13062.1p  transcript_id AT3G13062.1  protein_id AT3G13062.1p  transcript_id AT3G13062.1  
At3g13062	chr3:004184777	0.0	W/4184777-4185009,4185211-4185382,4185464-4185724,4185927-4186008,4186168-4186364,4186505-4186795	AT3G13062.3  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55960.1); Has 230 Blast hits to 230 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT3G13062.3p  transcript_id AT3G13062.3  protein_id AT3G13062.3p  transcript_id AT3G13062.3  
At3g13065	chr3:004187510	0.0	W/4187510-4187603,4187732-4187864,4187954-4188025,4188131-4188196,4188272-4188343,4188438-4188509,4188584-4188655,4188737-4188805,4188903-4188968,4189056-4189653,4189738-4190009,4190115-4190235,4190319-4190455,4190549-4190705,4190801-4190863	AT3G13065.1  CDS  gene_syn MGH6.19, SRF4, STRUBBELIG-RECEPTOR FAMILY 4  gene SRF4  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product SRF4 (STRUBBELIG-RECEPTOR FAMILY 4); ATP binding / kinase/ protein serine/threonine kinase  note STRUBBELIG-RECEPTOR FAMILY 4 (SRF4); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: SRF5 (STRUBBELIG-RECEPTOR FAMILY 5); ATP binding / kinase/ protein serine/threonine kinase (TAIR:AT1G78980.1); Has 111106 Blast hits to 83818 proteins in 2296 species: Archae - 65; Bacteria - 7442; Metazoa - 40424; Fungi - 5891; Plants - 42812; Viruses - 353; Other Eukaryotes - 14119 (source: NCBI BLink).  protein_id AT3G13065.1p  transcript_id AT3G13065.1  protein_id AT3G13065.1p  transcript_id AT3G13065.1  
At3g13070	chr3:004194546	0.0	C/4194546-4195112,4194237-4194334,4194057-4194150,4193827-4193904,4193561-4193664,4193357-4193438,4193143-4193282,4192986-4193064,4192821-4192884,4192552-4192643,4192402-4192467,4192137-4192253,4191816-4191995,4191511-4191735	AT3G13070.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product CBS domain-containing protein / transporter associated domain-containing protein  note CBS domain-containing protein / transporter associated domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Transporter-associated region (InterPro:IPR005170), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein / transporter associated domain-containing protein (TAIR:AT1G55930.1); Has 10211 Blast hits to 10209 proteins in 1421 species: Archae - 94; Bacteria - 6198; Metazoa - 215; Fungi - 98; Plants - 100; Viruses - 0; Other Eukaryotes - 3506 (source: NCBI BLink).  protein_id AT3G13070.1p  transcript_id AT3G13070.1  protein_id AT3G13070.1p  transcript_id AT3G13070.1  
At3g13080	chr3:004198836	0.0	C/4198836-4201250,4198653-4198739,4197906-4198553,4197606-4197818	AT3G13080.3  CDS  gene_syn ATMRP3, MJG19.26, MJG19_26, MRP3, MULTIDRUG RESISTANCE PROTEIN 3  gene ATMRP3  function encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim.  go_component plant-type vacuole|GO:0000325|16618929|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process transport|GO:0006810||IEA  go_component vacuolar membrane|GO:0005774|16618929|IDA  go_function chlorophyll catabolite transporter activity|GO:0010290|9681016|IDA  go_function glutathione S-conjugate-exporting ATPase activity|GO:0015431|9681016|IDA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|11346655|ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|9681016|IDA  product ATMRP3; ATPase, coupled to transmembrane movement of substances / chlorophyll catabolite transporter/ glutathione S-conjugate-exporting ATPase  note ATMRP3; FUNCTIONS IN: chlorophyll catabolite transporter activity, ATPase activity, coupled to transmembrane movement of substances, glutathione S-conjugate-exporting ATPase activity; INVOLVED IN: transport; LOCATED IN: apoplast, vacuolar membrane, plasma membrane, plant-type vacuole; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATMRP8; ATPase, coupled to transmembrane movement of substances (TAIR:AT3G13090.1); Has 191146 Blast hits to 175887 proteins in 2517 species: Archae - 3286; Bacteria - 132111; Metazoa - 7415; Fungi - 3673; Plants - 2216; Viruses - 6; Other Eukaryotes - 42439 (source: NCBI BLink).  protein_id AT3G13080.3p  transcript_id AT3G13080.3  protein_id AT3G13080.3p  transcript_id AT3G13080.3  
At3g13080	chr3:004198836	0.0	C/4198836-4201250,4198653-4198739,4197906-4198553,4197606-4197818	AT3G13080.4  CDS  gene_syn ATMRP3, MJG19.26, MJG19_26, MRP3, MULTIDRUG RESISTANCE PROTEIN 3  gene ATMRP3  function encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim.  go_component plant-type vacuole|GO:0000325|16618929|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process transport|GO:0006810||IEA  go_component vacuolar membrane|GO:0005774|16618929|IDA  go_function chlorophyll catabolite transporter activity|GO:0010290|9681016|IDA  go_function glutathione S-conjugate-exporting ATPase activity|GO:0015431|9681016|IDA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|11346655|ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|9681016|IDA  product ATMRP3; ATPase, coupled to transmembrane movement of substances / chlorophyll catabolite transporter/ glutathione S-conjugate-exporting ATPase  note ATMRP3; FUNCTIONS IN: chlorophyll catabolite transporter activity, ATPase activity, coupled to transmembrane movement of substances, glutathione S-conjugate-exporting ATPase activity; INVOLVED IN: transport; LOCATED IN: apoplast, vacuolar membrane, plasma membrane, plant-type vacuole; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATMRP8; ATPase, coupled to transmembrane movement of substances (TAIR:AT3G13090.1); Has 191146 Blast hits to 175887 proteins in 2517 species: Archae - 3286; Bacteria - 132111; Metazoa - 7415; Fungi - 3673; Plants - 2216; Viruses - 6; Other Eukaryotes - 42439 (source: NCBI BLink).  protein_id AT3G13080.4p  transcript_id AT3G13080.4  protein_id AT3G13080.4p  transcript_id AT3G13080.4  
At3g13080	chr3:004198836	0.0	C/4198836-4201250,4198653-4198739,4197906-4198553,4197654-4197818,4197029-4197538,4196617-4196922,4196217-4196520,4196019-4196128	AT3G13080.1  CDS  gene_syn ATMRP3, MJG19.26, MJG19_26, MRP3, MULTIDRUG RESISTANCE PROTEIN 3  gene ATMRP3  function encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim.  go_component plant-type vacuole|GO:0000325|16618929|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process transport|GO:0006810||IEA  go_component vacuolar membrane|GO:0005774|16618929|IDA  go_function chlorophyll catabolite transporter activity|GO:0010290|9681016|IDA  go_function glutathione S-conjugate-exporting ATPase activity|GO:0015431|9681016|IDA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|11346655|ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|9681016|IDA  product ATMRP3; ATPase, coupled to transmembrane movement of substances / chlorophyll catabolite transporter/ glutathione S-conjugate-exporting ATPase  note ATMRP3; FUNCTIONS IN: chlorophyll catabolite transporter activity, ATPase activity, coupled to transmembrane movement of substances, glutathione S-conjugate-exporting ATPase activity; INVOLVED IN: transport; LOCATED IN: apoplast, vacuolar membrane, plasma membrane, plant-type vacuole; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATMRP8; ATPase, coupled to transmembrane movement of substances (TAIR:AT3G13090.1); Has 361435 Blast hits to 201193 proteins in 2578 species: Archae - 6664; Bacteria - 258349; Metazoa - 9843; Fungi - 4761; Plants - 3027; Viruses - 8; Other Eukaryotes - 78783 (source: NCBI BLink).  protein_id AT3G13080.1p  transcript_id AT3G13080.1  protein_id AT3G13080.1p  transcript_id AT3G13080.1  
At3g13080	chr3:004198836	0.0	C/4198836-4201250,4198653-4198739,4197906-4198553,4197654-4197818,4197029-4197538,4196709-4196922,4196617-4196633,4196217-4196520,4196019-4196128	AT3G13080.2  CDS  gene_syn ATMRP3, MJG19.26, MJG19_26, MRP3, MULTIDRUG RESISTANCE PROTEIN 3  gene ATMRP3  function encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim.  go_component plant-type vacuole|GO:0000325|16618929|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process transport|GO:0006810||IEA  go_component vacuolar membrane|GO:0005774|16618929|IDA  go_function chlorophyll catabolite transporter activity|GO:0010290|9681016|IDA  go_function glutathione S-conjugate-exporting ATPase activity|GO:0015431|9681016|IDA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|11346655|ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|9681016|IDA  product ATMRP3; ATPase, coupled to transmembrane movement of substances / chlorophyll catabolite transporter/ glutathione S-conjugate-exporting ATPase  note ATMRP3; FUNCTIONS IN: chlorophyll catabolite transporter activity, ATPase activity, coupled to transmembrane movement of substances, glutathione S-conjugate-exporting ATPase activity; INVOLVED IN: transport; LOCATED IN: apoplast, vacuolar membrane, plasma membrane, plant-type vacuole; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATMRP8; ATPase, coupled to transmembrane movement of substances (TAIR:AT3G13090.1); Has 331086 Blast hits to 192846 proteins in 2557 species: Archae - 5936; Bacteria - 236033; Metazoa - 9362; Fungi - 4668; Plants - 2843; Viruses - 8; Other Eukaryotes - 72236 (source: NCBI BLink).  protein_id AT3G13080.2p  transcript_id AT3G13080.2  protein_id AT3G13080.2p  transcript_id AT3G13080.2  
At3g13090	chr3:004205874	0.0	C/4205874-4208171,4205675-4205761,4204982-4205596,4204709-4204873,4204300-4204594,4203684-4204204,4203538-4203601,4203214-4203453,4203013-4203128	AT3G13090.1  CDS  gene_syn ATABCC6, ATMRP8  gene ATMRP8  function member of MRP subfamily  go_component plasma membrane|GO:0005886|17151019|IDA  go_process transport|GO:0006810||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|11346655|ISS  product ATMRP8; ATPase, coupled to transmembrane movement of substances  note ATMRP8; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: plasma membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATMRP7; ATPase, coupled to transmembrane movement of substances (TAIR:AT3G13100.1); Has 360858 Blast hits to 201113 proteins in 2576 species: Archae - 6688; Bacteria - 258637; Metazoa - 9740; Fungi - 4368; Plants - 2878; Viruses - 11; Other Eukaryotes - 78536 (source: NCBI BLink).  protein_id AT3G13090.1p  transcript_id AT3G13090.1  protein_id AT3G13090.1p  transcript_id AT3G13090.1  
At3g13100	chr3:004211807	0.0	C/4211807-4214173,4211594-4211680,4210902-4211513,4210636-4210800,4210160-4210454,4209546-4210066,4209399-4209462,4209074-4209313,4208859-4208989	AT3G13100.1  CDS  gene_syn ATMRP7  gene ATMRP7  function member of MRP subfamily  go_component plasma membrane|GO:0005886|17151019|IDA  go_process response to other organism|GO:0051707|16531493|IEP  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|11346655|ISS  product ATMRP7; ATPase, coupled to transmembrane movement of substances  note ATMRP7; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: response to other organism; LOCATED IN: plasma membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATMRP8; ATPase, coupled to transmembrane movement of substances (TAIR:AT3G13090.1); Has 374599 Blast hits to 204167 proteins in 2580 species: Archae - 6988; Bacteria - 269052; Metazoa - 10026; Fungi - 4508; Plants - 2969; Viruses - 11; Other Eukaryotes - 81045 (source: NCBI BLink).  protein_id AT3G13100.1p  transcript_id AT3G13100.1  protein_id AT3G13100.1p  transcript_id AT3G13100.1  
At3g13110	chr3:004214939	0.0	C/4214939-4216114	AT3G13110.1  CDS  gene_syn ATSERAT2;2, SAT-1, SAT-A, SAT-M, SAT3, SERINE ACETYLTRANSFERASE 2;2, SERINE ACETYLTRANSFERASE 3, SERINE ACETYLTRANSFERASE A, SERINE ACETYLTRANSFERASE-1, SERINE ACETYLTRANSFERASE-MITOCHONDRIAL  gene ATSERAT2;2  function Encodes a mitochondrial serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system.  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component mitochondrion|GO:0005739|9830017|IDA  go_process cysteine biosynthetic process|GO:0019344|17293569|IMP  go_function serine O-acetyltransferase activity|GO:0009001|17293569|IDA  go_function serine O-acetyltransferase activity|GO:0009001|8639741|IGI  product ATSERAT2;2 (SERINE ACETYLTRANSFERASE 2;2); serine O-acetyltransferase  note SERINE ACETYLTRANSFERASE 2;2 (ATSERAT2;2); FUNCTIONS IN: serine O-acetyltransferase activity; INVOLVED IN: response to cadmium ion, cysteine biosynthetic process; LOCATED IN: mitochondrion; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Hexapeptide transferase, conserved site (InterPro:IPR018357), Serine O-acetyltransferase (InterPro:IPR005881), Trimeric LpxA-like (InterPro:IPR011004), Bacterial transferase hexapeptide repeat (InterPro:IPR001451), Serine acetyltransferase, N-terminal (InterPro:IPR010493); BEST Arabidopsis thaliana protein match is: ATSERAT2;1 (SERINE ACETYLTRANSFERASE 2;1); serine O-acetyltransferase (TAIR:AT1G55920.1); Has 15658 Blast hits to 15651 proteins in 1438 species: Archae - 250; Bacteria - 9734; Metazoa - 4; Fungi - 156; Plants - 156; Viruses - 0; Other Eukaryotes - 5358 (source: NCBI BLink).  protein_id AT3G13110.1p  transcript_id AT3G13110.1  protein_id AT3G13110.1p  transcript_id AT3G13110.1  
At3g13120	chr3:004221302	0.0	C/4221302-4221526,4221111-4221149,4220310-4220621	AT3G13120.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process translation|GO:0006412||IEA  go_function RNA binding|GO:0003723||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component small ribosomal subunit|GO:0015935||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 30S ribosomal protein S10, chloroplast, putative  note 30S ribosomal protein S10, chloroplast, putative; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation; LOCATED IN: small ribosomal subunit, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S10, bacterial (InterPro:IPR005731), Ribosomal protein S10, conserved site (InterPro:IPR018268), Ribosomal protein S10 (InterPro:IPR001848); Has 5644 Blast hits to 5644 proteins in 1660 species: Archae - 168; Bacteria - 2943; Metazoa - 245; Fungi - 117; Plants - 130; Viruses - 0; Other Eukaryotes - 2041 (source: NCBI BLink).  protein_id AT3G13120.1p  transcript_id AT3G13120.1  protein_id AT3G13120.1p  transcript_id AT3G13120.1  
At3g13130	chr3:004223008	0.0	W/4223008-4223613	AT3G13130.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte; Has 104 Blast hits to 96 proteins in 33 species: Archae - 0; Bacteria - 2; Metazoa - 28; Fungi - 17; Plants - 23; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT3G13130.1p  transcript_id AT3G13130.1  protein_id AT3G13130.1p  transcript_id AT3G13130.1  
At3g13140	chr3:004227357	0.0	C/4227357-4227377,4227192-4227267,4226654-4227108	AT3G13140.1  CDS  go_component cellular_component|GO:0005575||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; LOCATED IN: cellular_component unknown; Has 125 Blast hits to 104 proteins in 36 species: Archae - 0; Bacteria - 4; Metazoa - 10; Fungi - 30; Plants - 78; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G13140.1p  transcript_id AT3G13140.1  protein_id AT3G13140.1p  transcript_id AT3G13140.1  
At3g13150	chr3:004227975	0.0	C/4227975-4229630	AT3G13150.1  CDS  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G13160.1); Has 72770 Blast hits to 16518 proteins in 761 species: Archae - 118; Bacteria - 10588; Metazoa - 15302; Fungi - 10234; Plants - 19376; Viruses - 459; Other Eukaryotes - 16693 (source: NCBI BLink).  protein_id AT3G13150.1p  transcript_id AT3G13150.1  protein_id AT3G13150.1p  transcript_id AT3G13150.1  
At3g13160	chr3:004229994	0.0	C/4229994-4231178	AT3G13160.1  CDS  gene_syn MJG19.11  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G55890.1); Has 17559 Blast hits to 5480 proteins in 173 species: Archae - 5; Bacteria - 29; Metazoa - 296; Fungi - 211; Plants - 16490; Viruses - 0; Other Eukaryotes - 528 (source: NCBI BLink).  protein_id AT3G13160.1p  transcript_id AT3G13160.1  protein_id AT3G13160.1p  transcript_id AT3G13160.1  
At3g13170	chr3:004234138	0.0	C/4234138-4234192,4233909-4234008,4233663-4233736,4233480-4233581,4233260-4233333,4233141-4233157,4232983-4233052,4232871-4232907,4232677-4232724,4232533-4232591,4232407-4232438,4232206-4232311,4231939-4232059,4231779-4231842,4231560-4231689	AT3G13170.1  CDS  gene_syn ATSPO11-1, SPO11-1  gene ATSPO11-1  function Encodes AtSPO11-1, one of the three Arabidopsis homologues of the archaeal DNA topoisomerase VIA subunit (topo VIA). Required for meiotic recombination. AtSPO11-1 and AtSPO11-2 have overlapping functions (i.e. both required for meiotic recombination) whereas AtSPO11-3 functions in DNA replication. AtSPO11-1 accumulates in foci in early G2. At 1 h post-S phase, no foci are observed, but by 3 h a majority (80%) of meiocytes at this time point contain >50 foci. However, by 5 h, AtSPO11-1 foci are no longer detectable. This suggests that the protein undergoes a rapid cycle of accumulation and disappearance in meiocytes over a period of between 1 and 5 h post-S phase.  go_function DNA binding|GO:0003677||IEA  go_function catalytic activity|GO:0003824||IEA  go_function ATP binding|GO:0005524||IEA  go_component nucleus|GO:0005634|17785529|IDA  go_process meiotic DNA double-strand break processing|GO:0000706|18007598|IGI  go_process DNA metabolic process|GO:0006259||ISS  go_process DNA topological change|GO:0006265||ISS  go_process synapsis|GO:0007129|11157765|IMP  go_process reciprocal meiotic recombination|GO:0007131|11157765|IMP  go_process maintenance of meiotic sister chromatid cohesion|GO:0034090|16176934|IGI  go_process meiotic DNA double-strand break formation|GO:0042138|17965269|IGI  go_function DNA binding|GO:0003677||ISS  go_function DNA topoisomerase (ATP-hydrolyzing) activity|GO:0003918||ISS  go_function ATP binding|GO:0005524||ISS  product ATSPO11-1; ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ catalytic  note ATSPO11-1; FUNCTIONS IN: DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, catalytic activity, ATP binding; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Spo11/DNA topoisomerase VI, subunit A, N-terminal (InterPro:IPR013049), Meiotic recombination Spo11 (InterPro:IPR013048), Spo11/DNA topoisomerase VI, subunit A (InterPro:IPR002815); BEST Arabidopsis thaliana protein match is: RHL2 (ROOT HAIRLESS 2); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ identical protein binding / protein binding (TAIR:AT5G02820.1); Has 673 Blast hits to 673 proteins in 217 species: Archae - 137; Bacteria - 11; Metazoa - 151; Fungi - 82; Plants - 86; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).  protein_id AT3G13170.1p  transcript_id AT3G13170.1  protein_id AT3G13170.1p  transcript_id AT3G13170.1  
At3g13175	chr3:004235260	0.0	C/4235260-4235580	AT3G13175.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; Has 11 Blast hits to 11 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G13175.1p  transcript_id AT3G13175.1  protein_id AT3G13175.1p  transcript_id AT3G13175.1  
At3g13180	chr3:004239852	0.0	C/4239852-4239966,4239674-4239736,4239301-4239455,4239060-4239173,4238883-4238948,4238596-4238679,4238414-4238500,4238091-4238182,4237944-4238004,4237756-4237815,4237592-4237652,4237333-4237440,4237083-4237201,4236929-4237000,4236736-4236821,4236530-4236626,4236326-4236457	AT3G13180.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function RNA binding|GO:0003723||IEA  product NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein  note NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678), NusB/RsmB/TIM44 (InterPro:IPR006027); BEST Arabidopsis thaliana protein match is: nucleolar protein, putative (TAIR:AT4G26600.1); Has 6409 Blast hits to 6390 proteins in 1305 species: Archae - 219; Bacteria - 3588; Metazoa - 518; Fungi - 240; Plants - 144; Viruses - 0; Other Eukaryotes - 1700 (source: NCBI BLink).  protein_id AT3G13180.1p  transcript_id AT3G13180.1  protein_id AT3G13180.1p  transcript_id AT3G13180.1  
At3g13190	chr3:004240751	0.0	W/4240751-4240840,4240944-4241804	AT3G13190.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product myosin heavy chain-related  note myosin heavy chain-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55860.1); Has 24248 Blast hits to 15265 proteins in 1064 species: Archae - 329; Bacteria - 2603; Metazoa - 12748; Fungi - 1596; Plants - 1122; Viruses - 98; Other Eukaryotes - 5752 (source: NCBI BLink).  protein_id AT3G13190.1p  transcript_id AT3G13190.1  protein_id AT3G13190.1p  transcript_id AT3G13190.1  
At3g13190	chr3:004240751	0.0	W/4240751-4240840,4240944-4241804	AT3G13190.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product myosin heavy chain-related  note myosin heavy chain-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55860.1); Has 24248 Blast hits to 15265 proteins in 1064 species: Archae - 329; Bacteria - 2603; Metazoa - 12748; Fungi - 1596; Plants - 1122; Viruses - 98; Other Eukaryotes - 5752 (source: NCBI BLink).  protein_id AT3G13190.2p  transcript_id AT3G13190.2  protein_id AT3G13190.2p  transcript_id AT3G13190.2  
At3g13190	chr3:004240751	0.0	W/4240751-4240840,4240944-4241804	AT3G13190.3  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product myosin heavy chain-related  note myosin heavy chain-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55860.1); Has 24248 Blast hits to 15265 proteins in 1064 species: Archae - 329; Bacteria - 2603; Metazoa - 12748; Fungi - 1596; Plants - 1122; Viruses - 98; Other Eukaryotes - 5752 (source: NCBI BLink).  protein_id AT3G13190.3p  transcript_id AT3G13190.3  protein_id AT3G13190.3p  transcript_id AT3G13190.3  
At3g13200	chr3:004242239	0.0	W/4242239-4242369,4242748-4242854,4242923-4242964,4243059-4243146,4243420-4243519,4243660-4243760,4243853-4243976	AT3G13200.1  CDS  gene_syn EMB2769, EMBRYO DEFECTIVE 2769  gene EMB2769  go_component spliceosome|GO:0005681||IEA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398||IEA  go_function molecular_function|GO:0003674||ND  product EMB2769 (EMBRYO DEFECTIVE 2769)  note EMBRYO DEFECTIVE 2769 (EMB2769); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: spliceosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cwf15/Cwc15 cell cycle control protein (InterPro:IPR006973); Has 5183 Blast hits to 3520 proteins in 255 species: Archae - 2; Bacteria - 176; Metazoa - 2103; Fungi - 582; Plants - 191; Viruses - 160; Other Eukaryotes - 1969 (source: NCBI BLink).  protein_id AT3G13200.1p  transcript_id AT3G13200.1  protein_id AT3G13200.1p  transcript_id AT3G13200.1  
At3g13205	chr3:004244282	0.0	C/4244282-4244686	AT3G13205.1  pseudogenic_transcript  pseudo  function pseudogene of vacuolar protein sorting-associated protein  
At3g13210	chr3:004244921	0.0	W/4244921-4245202,4245308-4246056,4246308-4246373,4246461-4246605,4246695-4246913,4247008-4247206,4247295-4247490,4247580-4247697	AT3G13210.1  CDS  go_component intracellular|GO:0005622||IEA  go_process RNA processing|GO:0006396||IEA  go_function binding|GO:0005488||IEA  go_component intracellular|GO:0005622||ISS  go_process RNA processing|GO:0006396||ISS  product crooked neck protein, putative / cell cycle protein, putative  note crooked neck protein, putative / cell cycle protein, putative; FUNCTIONS IN: binding; INVOLVED IN: RNA processing; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: crooked neck protein, putative / cell cycle protein, putative (TAIR:AT5G41770.1); Has 3024 Blast hits to 1468 proteins in 170 species: Archae - 0; Bacteria - 10; Metazoa - 1364; Fungi - 858; Plants - 393; Viruses - 0; Other Eukaryotes - 399 (source: NCBI BLink).  protein_id AT3G13210.1p  transcript_id AT3G13210.1  protein_id AT3G13210.1p  transcript_id AT3G13210.1  
At3g13220	chr3:004250506	0.0	C/4250506-4250703,4250137-4250426,4249916-4250071,4249600-4249783,4249232-4249513,4248876-4249160,4248508-4248792,4248325-4248432,4247968-4248237	AT3G13220.1  CDS  go_component membrane|GO:0016020||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ABC transporter family protein  note ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: membrane; EXPRESSED IN: leaf whorl, sepal, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT5G06530.2); Has 234665 Blast hits to 214225 proteins in 2642 species: Archae - 4315; Bacteria - 162087; Metazoa - 7479; Fungi - 4277; Plants - 2626; Viruses - 13; Other Eukaryotes - 53868 (source: NCBI BLink).  protein_id AT3G13220.1p  transcript_id AT3G13220.1  protein_id AT3G13220.1p  transcript_id AT3G13220.1  
At3g13222	chr3:004254029	0.0	C/4254029-4254206,4253529-4253572,4253344-4253410,4253137-4253263,4252802-4253055,4252432-4252672,4252139-4252301,4251584-4251991,4251287-4251508	AT3G13222.1  CDS  gene_syn GBF-INTERACTING PROTEIN 1, GIP1  gene GIP1  function Encodes a protein that binds to G-box binding transcription factors and enhances their binding affinities to G-box in vitro. This protein localizes to the nucleus and is expressed predominantly in the root.  go_component nucleus|GO:0005634|16117846|IEP  go_process positive regulation of DNA binding|GO:0043388|16117846|IDA  go_function unfolded protein binding|GO:0051082|16117846|IDA  product GIP1 (GBF-INTERACTING PROTEIN 1); unfolded protein binding  note GBF-INTERACTING PROTEIN 1 (GIP1); FUNCTIONS IN: unfolded protein binding; INVOLVED IN: positive regulation of DNA binding; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1296 (InterPro:IPR009719); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55820.1); Has 156 Blast hits to 146 proteins in 38 species: Archae - 0; Bacteria - 12; Metazoa - 13; Fungi - 26; Plants - 93; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT3G13222.1p  transcript_id AT3G13222.1  protein_id AT3G13222.1p  transcript_id AT3G13222.1  
At3g13223	chr3:004254528	0.0	W/4254528-4254608	AT3G13223.1  tRNA  gene_syn 60694.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: AAG)  transcript_id AT3G13223.1  
At3g13224	chr3:004254848	0.0	W/4254848-4254903,4255045-4255085,4255221-4255384,4255486-4255591,4255686-4255855,4256082-4256621	AT3G13224.2  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT5G40490.1); Has 66411 Blast hits to 30653 proteins in 1240 species: Archae - 29; Bacteria - 14885; Metazoa - 30073; Fungi - 5081; Plants - 8541; Viruses - 347; Other Eukaryotes - 7455 (source: NCBI BLink).  protein_id AT3G13224.2p  transcript_id AT3G13224.2  protein_id AT3G13224.2p  transcript_id AT3G13224.2  
At3g13224	chr3:004254848	0.0	W/4254848-4254903,4255045-4255085,4255221-4255384,4255486-4255591,4255686-4256014	AT3G13224.1  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT5G40490.1); Has 22854 Blast hits to 13865 proteins in 592 species: Archae - 2; Bacteria - 1218; Metazoa - 13742; Fungi - 1984; Plants - 3831; Viruses - 0; Other Eukaryotes - 2077 (source: NCBI BLink).  protein_id AT3G13224.1p  transcript_id AT3G13224.1  protein_id AT3G13224.1p  transcript_id AT3G13224.1  
At3g13227	chr3:004258028	0.0	W/4258028-4258363	AT3G13227.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product serine-rich protein-related  note serine-rich protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: serine-rich protein-related (TAIR:AT5G55980.1); Has 102 Blast hits to 102 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G13227.1p  transcript_id AT3G13227.1  protein_id AT3G13227.1p  transcript_id AT3G13227.1  
At3g13225	chr3:004261058	0.0	C/4261058-4261728,4259743-4260941,4259564-4259643,4259313-4259476,4259100-4259217,4258928-4259011	AT3G13225.1  CDS  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: WW/Rsp5/WWP (InterPro:IPR001202); Has 4631 Blast hits to 3155 proteins in 358 species: Archae - 8; Bacteria - 393; Metazoa - 1512; Fungi - 675; Plants - 440; Viruses - 85; Other Eukaryotes - 1518 (source: NCBI BLink).  protein_id AT3G13225.1p  transcript_id AT3G13225.1  protein_id AT3G13225.1p  transcript_id AT3G13225.1  
At3g13225	chr3:004262769	0.0	C/4262769-4262853,4262448-4262534,4261871-4261995,4261058-4261794,4259743-4260941,4259564-4259643,4259313-4259476,4259100-4259217,4258928-4259011	AT3G13225.2  CDS  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: WW/Rsp5/WWP (InterPro:IPR001202).  protein_id AT3G13225.2p  transcript_id AT3G13225.2  protein_id AT3G13225.2p  transcript_id AT3G13225.2  
At3g13226	chr3:004266222	0.0	C/4266222-4266286,4265313-4265924,4265093-4265185,4264830-4264917,4264442-4264732	AT3G13226.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process regulation of DNA repair|GO:0006282||IEA  go_process regulation of DNA repair|GO:0006282||ISS  go_function molecular_function|GO:0003674||ND  product regulatory protein RecX family protein  note regulatory protein RecX family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of DNA repair; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Regulatory protein RecX (InterPro:IPR003783); Has 944 Blast hits to 944 proteins in 384 species: Archae - 0; Bacteria - 748; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 180 (source: NCBI BLink).  protein_id AT3G13226.1p  transcript_id AT3G13226.1  protein_id AT3G13226.1p  transcript_id AT3G13226.1  
At3g13228	chr3:004267075	0.0	W/4267075-4268052	AT3G13228.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G18760.1); Has 3987 Blast hits to 3976 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 1510; Fungi - 228; Plants - 1609; Viruses - 16; Other Eukaryotes - 624 (source: NCBI BLink).  protein_id AT3G13228.1p  transcript_id AT3G13228.1  protein_id AT3G13228.1p  transcript_id AT3G13228.1  
At3g13229	chr3:004268566	0.0	C/4268566-4269435	AT3G13229.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF868, plant (InterPro:IPR008586); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12690.1); Has 141 Blast hits to 141 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G13229.1p  transcript_id AT3G13229.1  protein_id AT3G13229.1p  transcript_id AT3G13229.1  
At3g13230	chr3:004270423	0.0	W/4270423-4271070	AT3G13230.1  CDS  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  product RNA binding  note RNA binding; FUNCTIONS IN: RNA binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087); Has 526 Blast hits to 526 proteins in 226 species: Archae - 118; Bacteria - 0; Metazoa - 138; Fungi - 131; Plants - 49; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT3G13230.1p  transcript_id AT3G13230.1  protein_id AT3G13230.1p  transcript_id AT3G13230.1  
At3g13235	chr3:004274283	0.0	C/4274283-4274348,4274077-4274109,4273802-4273932,4273579-4273699,4273371-4273487,4273170-4273235,4272921-4272983,4272782-4272826,4272574-4272635,4272393-4272486,4272204-4272296,4272050-4272119,4271880-4271950,4271708-4271791,4271492-4271620	AT3G13235.1  CDS  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  product ubiquitin family protein  note ubiquitin family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Peptidase A2A, retrovirus, catalytic (InterPro:IPR001995), Peptidase aspartic, catalytic (InterPro:IPR009007), Ubiquitin (InterPro:IPR000626), UBA-like (InterPro:IPR009060); Has 6366 Blast hits to 3177 proteins in 509 species: Archae - 0; Bacteria - 2; Metazoa - 2716; Fungi - 819; Plants - 1543; Viruses - 81; Other Eukaryotes - 1205 (source: NCBI BLink).  protein_id AT3G13235.1p  transcript_id AT3G13235.1  protein_id AT3G13235.1p  transcript_id AT3G13235.1  
At3g13240	chr3:004275760	0.0	W/4275760-4275817,4276176-4276240	AT3G13240.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.10 ten leaves visible, petal differentiation and expansion stage, E expanded cotyledon stage; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G13240.1p  transcript_id AT3G13240.1  protein_id AT3G13240.1p  transcript_id AT3G13240.1  
At3g13250	chr3:004276747	0.0	C/4276747-4281476	AT3G13250.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to AT hook motif-containing protein-related [Arabidopsis thaliana] (TAIR:AT1G35940.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30560.1); similar to AT hook motif-containing protein-related [Arabidopsis thaliana] (TAIR:AT3G42100.1); similar to hypothetical protein 27.t00039 [Brassica oleracea] (GB:ABD65060.1); similar to Protein of unknown function DUF889, eukaryote [Medicago truncatula] (GB:ABE82731.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE80108.1); contains InterPro domain Protein of unknown function DUF889, eukaryote; (InterPro:IPR010285)  
At3g13260	chr3:004284053	0.0	C/4284053-4285300	AT3G13260.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to replication protein-related [Arabidopsis thaliana] (TAIR:AT5G35260.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At3g13270	chr3:004285851	0.0	C/4285851-4288332	AT3G13270.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14450.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35920.1); similar to hypothetical protein 31.t00031 [Brassica oleracea] (GB:ABD65118.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At3g13275	chr3:004289425	0.0	C/4289425-4289634	AT3G13275.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 13 Blast hits to 13 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G13275.1p  transcript_id AT3G13275.1  protein_id AT3G13275.1p  transcript_id AT3G13275.1  
At3g13277	chr3:004290082	0.0	W/4290082-4291595	AT3G13277.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G13277.1  
At3g13280	chr3:004296796	0.0	C/4296796-4297000,4296488-4296712,4296251-4296416,4296058-4296145,4295914-4295980,4295688-4295848,4295327-4295566	AT3G13280.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, sperm cell, leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G01355.1); Has 66 Blast hits to 64 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G13280.1p  transcript_id AT3G13280.1  protein_id AT3G13280.1p  transcript_id AT3G13280.1  
At3g13290	chr3:004297529	0.0	W/4297529-4298194,4298270-4298319,4298407-4298563,4298674-4298892,4299200-4299328,4299475-4301049,4301314-4301673,4301755-4301874,4302070-4302186,4302344-4302493,4302597-4302722,4302814-4303113	AT3G13290.1  CDS  gene_syn VARICOSE-RELATED, VCR  gene VCR  go_component cellular_component|GO:0005575||ND  go_function nucleotide binding|GO:0000166||ISS  product VCR (VARICOSE-RELATED); nucleotide binding  note VARICOSE-RELATED (VCR); FUNCTIONS IN: nucleotide binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: VCS (VARICOSE); nucleotide binding / protein homodimerization (TAIR:AT3G13300.1); Has 812 Blast hits to 636 proteins in 176 species: Archae - 4; Bacteria - 160; Metazoa - 282; Fungi - 137; Plants - 80; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT3G13290.1p  transcript_id AT3G13290.1  protein_id AT3G13290.1p  transcript_id AT3G13290.1  
At3g13300	chr3:004304085	0.0	W/4304085-4304100,4304206-4304798,4304891-4304940,4305095-4305251,4305340-4305558,4305879-4306007,4306156-4307679,4307921-4308280,4308363-4308482,4308611-4308781,4308876-4309040,4309429-4309554,4309650-4309949	AT3G13300.2  CDS  gene_syn VARICOSE, VCS  gene VCS  function Encodes VCS (VARICOSE). Involved in mRNA decapping. VCS forms a mRNA decapping complex with DCP1 (At1g08370) and DCP2 (At5g13570). Unlike DCP2, VCS itself does not have mRNA decapping activity in vitro. DCP1, DCP2 and VCS colocalize in cytoplasmic loci, which are putative Arabidopsis mRNA processing bodies. Null mutants of DCP1, DCP2, and VCS accumulate capped mRNAs with a reduced degradation rate. These mutants also share a similar lethal phenotype at the seedling cotyledon stage, with disorganized veins, swollen root hairs, and altered epidermal cell morphology. VCS is also required for leaf development.  go_component cytoplasmic mRNA processing body|GO:0000932|17158604|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process mRNA catabolic process|GO:0006402|17513503|IMP  go_process leaf morphogenesis|GO:0009965|14660546|IMP  go_process deadenylation-independent decapping of nuclear-transcribed mRNA|GO:0031087|17158604|IDA  go_function nucleotide binding|GO:0000166||ISS  go_function protein homodimerization activity|GO:0042803|17513503|IPI  product VCS (VARICOSE); nucleotide binding / protein homodimerization  note VARICOSE (VCS); FUNCTIONS IN: protein homodimerization activity, nucleotide binding; INVOLVED IN: mRNA catabolic process, deadenylation-independent decapping of nuclear-transcribed mRNA, leaf morphogenesis; LOCATED IN: cytosol, nucleus, cytoplasmic mRNA processing body; EXPRESSED IN: whole plant, guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: VCR (VARICOSE-RELATED); nucleotide binding (TAIR:AT3G13290.1); Has 617 Blast hits to 546 proteins in 164 species: Archae - 2; Bacteria - 118; Metazoa - 198; Fungi - 129; Plants - 66; Viruses - 2; Other Eukaryotes - 102 (source: NCBI BLink).  protein_id AT3G13300.2p  transcript_id AT3G13300.2  protein_id AT3G13300.2p  transcript_id AT3G13300.2  
At3g13300	chr3:004304085	0.0	W/4304085-4304798,4304891-4304940,4305095-4305251,4305340-4305558,4305879-4306007,4306156-4307679,4307921-4308280,4308363-4308482,4308611-4308781,4308876-4309040,4309429-4309554,4309650-4309949	AT3G13300.1  CDS  gene_syn VARICOSE, VCS  gene VCS  function Encodes VCS (VARICOSE). Involved in mRNA decapping. VCS forms a mRNA decapping complex with DCP1 (At1g08370) and DCP2 (At5g13570). Unlike DCP2, VCS itself does not have mRNA decapping activity in vitro. DCP1, DCP2 and VCS colocalize in cytoplasmic loci, which are putative Arabidopsis mRNA processing bodies. Null mutants of DCP1, DCP2, and VCS accumulate capped mRNAs with a reduced degradation rate. These mutants also share a similar lethal phenotype at the seedling cotyledon stage, with disorganized veins, swollen root hairs, and altered epidermal cell morphology. VCS is also required for leaf development.  go_component cytoplasmic mRNA processing body|GO:0000932|17158604|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process mRNA catabolic process|GO:0006402|17513503|IMP  go_process leaf morphogenesis|GO:0009965|14660546|IMP  go_process deadenylation-independent decapping of nuclear-transcribed mRNA|GO:0031087|17158604|IDA  go_function nucleotide binding|GO:0000166||ISS  go_function protein homodimerization activity|GO:0042803|17513503|IPI  product VCS (VARICOSE); nucleotide binding / protein homodimerization  note VARICOSE (VCS); FUNCTIONS IN: protein homodimerization activity, nucleotide binding; INVOLVED IN: mRNA catabolic process, deadenylation-independent decapping of nuclear-transcribed mRNA, leaf morphogenesis; LOCATED IN: cytosol, nucleus, cytoplasmic mRNA processing body; EXPRESSED IN: whole plant, guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: VCR (VARICOSE-RELATED); nucleotide binding (TAIR:AT3G13290.1); Has 740 Blast hits to 663 proteins in 177 species: Archae - 4; Bacteria - 127; Metazoa - 239; Fungi - 169; Plants - 85; Viruses - 3; Other Eukaryotes - 113 (source: NCBI BLink).  protein_id AT3G13300.1p  transcript_id AT3G13300.1  protein_id AT3G13300.1p  transcript_id AT3G13300.1  
At3g13310	chr3:004310827	0.0	C/4310827-4311300	AT3G13310.1  CDS  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (J11) (TAIR:AT4G36040.1); Has 12954 Blast hits to 12953 proteins in 1814 species: Archae - 93; Bacteria - 4750; Metazoa - 2608; Fungi - 1011; Plants - 943; Viruses - 5; Other Eukaryotes - 3544 (source: NCBI BLink).  protein_id AT3G13310.1p  transcript_id AT3G13310.1  protein_id AT3G13310.1p  transcript_id AT3G13310.1  
At3g13320	chr3:004315418	0.0	W/4315418-4315462,4315574-4315819,4315905-4315972,4316065-4316093,4316200-4316396,4316486-4316698,4316918-4317052,4317161-4317277,4317376-4317429,4317519-4317635,4317724-4317817,4317987-4317997	AT3G13320.1  CDS  gene_syn CATION EXCHANGER 2, CAX2, MDC11.19, atcax2  gene CAX2  function low affinity calcium antiporter CAX2  go_component vacuole|GO:0005773|8710949|IDA  go_component plant-type vacuole membrane|GO:0009705|8710949|IDA  go_component endomembrane system|GO:0012505|11500563|TAS  go_process calcium ion transport|GO:0006816|8710949|IDA  go_process calcium ion transport|GO:0006816|8710949|IGI  go_process manganese ion transport|GO:0006828|8710949|IGI  go_process cadmium ion transport|GO:0015691|8710949|IGI  go_process metal ion transport|GO:0030001|11500563|TAS  go_process metal ion transport|GO:0030001|8710949|IMP  go_function calcium:cation antiporter activity|GO:0015368||ISS  go_function calcium:hydrogen antiporter activity|GO:0015369|15862304|IDA  go_function calcium:hydrogen antiporter activity|GO:0015369|8710949|IDA  go_function calcium:hydrogen antiporter activity|GO:0015369|8710949|IGI  product CAX2 (CATION EXCHANGER 2); calcium:cation antiporter/ calcium:hydrogen antiporter  note CATION EXCHANGER 2 (CAX2); FUNCTIONS IN: calcium:cation antiporter activity, calcium:hydrogen antiporter activity; INVOLVED IN: manganese ion transport, cadmium ion transport, calcium ion transport, metal ion transport; LOCATED IN: endomembrane system, plant-type vacuole membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sodium/calcium exchanger membrane region (InterPro:IPR004837), Calcium/proton exchanger superfamily (InterPro:IPR004798), Calcium/proton exchanger (InterPro:IPR004713); BEST Arabidopsis thaliana protein match is: ATCAX5; calcium:cation antiporter/ cation:cation antiporter (TAIR:AT1G55730.2); Has 2070 Blast hits to 1957 proteins in 585 species: Archae - 30; Bacteria - 1091; Metazoa - 17; Fungi - 474; Plants - 150; Viruses - 0; Other Eukaryotes - 308 (source: NCBI BLink).  protein_id AT3G13320.1p  transcript_id AT3G13320.1  protein_id AT3G13320.1p  transcript_id AT3G13320.1  
At3g13330	chr3:004329901	0.0	C/4329901-4330061,4329345-4329447,4329116-4329228,4328852-4328974,4328133-4328234,4327867-4327927,4327446-4327562,4327287-4327354,4327085-4327186,4326794-4327019,4326448-4326684,4326231-4326358,4325989-4326106,4325683-4325901,4325430-4325588,4325232-4325308,4324936-4325144,4324528-4324735,4324346-4324425,4324136-4324253,4323889-4324059,4323540-4323708,4323424-4323467,4323287-4323329,4323066-4323211,4322836-4322930,4321845-4322740,4321434-4321715,4321243-4321338,4320974-4321152,4320795-4320876,4320516-4320640,4320264-4320356,4320017-4320170,4319804-4319845	AT3G13330.1  CDS  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  product binding  note binding; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-type fold (InterPro:IPR016024); Has 345 Blast hits to 234 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 178; Plants - 15; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT3G13330.1p  transcript_id AT3G13330.1  protein_id AT3G13330.1p  transcript_id AT3G13330.1  
At3g13335	chr3:004330772	0.0	W/4330772-4330843	AT3G13335.1  tRNA  gene_syn 60511.TRNA-ASP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asp (anticodon: GTC)  transcript_id AT3G13335.1  
At3g13340	chr3:004332370	0.0	W/4332370-4332513,4332625-4332792,4332878-4332964,4333125-4333259,4333337-4333447,4333537-4333628,4333713-4333818,4334005-4334091,4334190-4334603	AT3G13340.1  CDS  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product WD-40 repeat family protein  note WD-40 repeat family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein (TAIR:AT1G55680.1); Has 15602 Blast hits to 7419 proteins in 385 species: Archae - 68; Bacteria - 4635; Metazoa - 4492; Fungi - 2962; Plants - 964; Viruses - 0; Other Eukaryotes - 2481 (source: NCBI BLink).  protein_id AT3G13340.1p  transcript_id AT3G13340.1  protein_id AT3G13340.1p  transcript_id AT3G13340.1  
At3g13350	chr3:004337620	0.0	C/4337620-4337804,4337066-4337144,4336810-4336972,4336666-4336713,4335914-4336290,4335721-4335828	AT3G13350.1  CDS  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein  note high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein; FUNCTIONS IN: transcription factor activity; LOCATED IN: nucleus, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910), AT-rich interaction region (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein (TAIR:AT1G55650.1); Has 1573 Blast hits to 1550 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 1249; Fungi - 56; Plants - 129; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).  protein_id AT3G13350.1p  transcript_id AT3G13350.1  protein_id AT3G13350.1p  transcript_id AT3G13350.1  
At3g13360	chr3:004339115	0.0	C/4339115-4339982,4338472-4338983	AT3G13360.1  CDS  gene_syn WIP3, WPP-domain Interacting Protein 3  gene WIP3  go_component nuclear envelope|GO:0005635|17600715|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product WIP3 (WPP-domain Interacting Protein 3)  note WPP-domain Interacting Protein 3 (WIP3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nuclear envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: WIP1 (WPP-DOMAIN INTERACTING PROTEIN 1); protein heterodimerization/ protein homodimerization (TAIR:AT4G26455.1); Has 130 Blast hits to 126 proteins in 35 species: Archae - 0; Bacteria - 7; Metazoa - 18; Fungi - 8; Plants - 43; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT3G13360.1p  transcript_id AT3G13360.1  protein_id AT3G13360.1p  transcript_id AT3G13360.1  
At3g13370	chr3:004341664	0.0	W/4341664-4342230	AT3G13370.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 62 Blast hits to 38 proteins in 18 species: Archae - 0; Bacteria - 2; Metazoa - 38; Fungi - 4; Plants - 13; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G13370.1p  transcript_id AT3G13370.1  protein_id AT3G13370.1p  transcript_id AT3G13370.1  
At3g13380	chr3:004347240	0.0	W/4347240-4350734	AT3G13380.1  CDS  gene_syn BRI1-LIKE 3, BRL3  gene BRL3  function Similar to BRI, brassinosteroid receptor protein.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function protein kinase activity|GO:0004672||ISS  go_function protein binding|GO:0005515||ISS  product BRL3 (BRI1-LIKE 3); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase  note BRI1-LIKE 3 (BRL3); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: BRL1 (BRI 1 LIKE); kinase (TAIR:AT1G55610.2); Has 145847 Blast hits to 99025 proteins in 3260 species: Archae - 90; Bacteria - 11624; Metazoa - 58618; Fungi - 7168; Plants - 48342; Viruses - 289; Other Eukaryotes - 19716 (source: NCBI BLink).  protein_id AT3G13380.1p  transcript_id AT3G13380.1  protein_id AT3G13380.1p  transcript_id AT3G13380.1  
At3g13390	chr3:004353039	0.0	C/4353039-4353289,4351841-4352950,4351401-4351704	AT3G13390.1  CDS  gene_syn SKU5 Similar 11, sks11  gene sks11  go_component endomembrane system|GO:0012505||IEA  go_function copper ion binding|GO:0005507||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product sks11 (SKU5 Similar 11); copper ion binding / oxidoreductase  note SKU5 Similar 11 (sks11); FUNCTIONS IN: oxidoreductase activity, copper ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: sks12 (SKU5 Similar 12); copper ion binding / oxidoreductase (TAIR:AT1G55570.1); Has 3720 Blast hits to 3694 proteins in 674 species: Archae - 6; Bacteria - 1099; Metazoa - 255; Fungi - 1447; Plants - 782; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).  protein_id AT3G13390.1p  transcript_id AT3G13390.1  protein_id AT3G13390.1p  transcript_id AT3G13390.1  
At3g13400	chr3:004355257	0.0	W/4355257-4355504,4355787-4356893,4357005-4357305	AT3G13400.1  CDS  gene_syn SKU5 Similar 13, sks13  gene sks13  go_component endomembrane system|GO:0012505||IEA  go_function copper ion binding|GO:0005507||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product sks13 (SKU5 Similar 13); copper ion binding / oxidoreductase  note SKU5 Similar 13 (sks13); FUNCTIONS IN: oxidoreductase activity, copper ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: sks14 (SKU5 Similar 14); copper ion binding / oxidoreductase (TAIR:AT1G55560.1); Has 3612 Blast hits to 3589 proteins in 641 species: Archae - 2; Bacteria - 988; Metazoa - 254; Fungi - 1448; Plants - 777; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).  protein_id AT3G13400.1p  transcript_id AT3G13400.1  protein_id AT3G13400.1p  transcript_id AT3G13400.1  
At3g13403	chr3:004358792	0.0	C/4358792-4358826,4358537-4358675	AT3G13403.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G13403.1p  transcript_id AT3G13403.1  protein_id AT3G13403.1p  transcript_id AT3G13403.1  
At3g13404	chr3:004358934	0.0	C/4358934-4358980,4358537-4358555	AT3G13404.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT3G13404.1p  transcript_id AT3G13404.1  protein_id AT3G13404.1p  transcript_id AT3G13404.1  
At3g13405	chr3:004359012	0.0	C/4359012-4359202	AT3G13405.1  miRNA  gene_syn MICRORNA 169A, MIR169A  gene MIR169A  function Encodes a microRNA that targets several HAP2 family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: CAGCCAAGGAUGACUUGCCGA  go_process gene silencing by miRNA|GO:0035195|15851028|IDA  product MIR169A (MICRORNA 169A); miRNA  transcript_id AT3G13405.1  
At3g13410	chr3:004363911	0.0	C/4363911-4364032,4363675-4363777,4363519-4363578,4363272-4363334,4362947-4363147,4362732-4362843,4362430-4362641,4362149-4362241	AT3G13410.1  CDS  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55546.1); Has 28 Blast hits to 28 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G13410.1p  transcript_id AT3G13410.1  protein_id AT3G13410.1p  transcript_id AT3G13410.1  
At3g13420	chr3:004364723	0.0	W/4364723-4364815,4364995-4365188,4365451-4365892	AT3G13420.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55535.2); Has 27 Blast hits to 27 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G13420.1p  transcript_id AT3G13420.1  protein_id AT3G13420.1p  transcript_id AT3G13420.1  
At3g13430	chr3:004367754	0.0	W/4367754-4368701	AT3G13430.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G55530.1); Has 6683 Blast hits to 6659 proteins in 214 species: Archae - 0; Bacteria - 10; Metazoa - 2278; Fungi - 631; Plants - 2636; Viruses - 26; Other Eukaryotes - 1102 (source: NCBI BLink).  protein_id AT3G13430.1p  transcript_id AT3G13430.1  protein_id AT3G13430.1p  transcript_id AT3G13430.1  
At3g13430	chr3:004367754	0.0	W/4367754-4368701	AT3G13430.2  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G55530.1); Has 6683 Blast hits to 6659 proteins in 214 species: Archae - 0; Bacteria - 10; Metazoa - 2278; Fungi - 631; Plants - 2636; Viruses - 26; Other Eukaryotes - 1102 (source: NCBI BLink).  protein_id AT3G13430.2p  transcript_id AT3G13430.2  protein_id AT3G13430.2p  transcript_id AT3G13430.2  
At3g13432	chr3:004371482	0.0	W/4371482-4371563,4371729-4371862	AT3G13432.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G13432.1p  transcript_id AT3G13432.1  protein_id AT3G13432.1p  transcript_id AT3G13432.1  
At3g13433	chr3:004374256	0.0	W/4374256-4374355,4374424-4374476	AT3G13433.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system.  protein_id AT3G13433.1p  transcript_id AT3G13433.1  protein_id AT3G13433.1p  transcript_id AT3G13433.1  
At3g13435	chr3:004375441	0.0	W/4375441-4375540,4375830-4375945	AT3G13435.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G13435.1p  transcript_id AT3G13435.1  protein_id AT3G13435.1p  transcript_id AT3G13435.1  
At3g13437	chr3:004376393	0.0	W/4376393-4376489,4376577-4376692	AT3G13437.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G13437.1p  transcript_id AT3G13437.1  protein_id AT3G13437.1p  transcript_id AT3G13437.1  
At3g13438	chr3:004377061	0.0	C/4377061-4378171	AT3G13438.1  mRNA_TE_gene  pseudo  gene_syn SADHU NON-CODING RETROTRANSPOSON, SADHU7-1  gene SADHU7-1  function Member of Sadhu non-coding retrotransposon family  note Transposable element gene  
At3g13440	chr3:004378338	0.0	W/4378338-4378414,4378588-4379347	AT3G13440.1  CDS  go_process methanol oxidation|GO:0015946||IEA  go_process acetate biosynthetic process from carbon monoxide|GO:0019415||IEA  go_process methylation|GO:0032259||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  product methyltransferase/ nucleic acid binding  note methyltransferase/ nucleic acid binding; FUNCTIONS IN: methyltransferase activity, nucleic acid binding; INVOLVED IN: methylation, acetate biosynthetic process from carbon monoxide, methanol oxidation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: N-6 adenine-specific DNA methylase, conserved site (InterPro:IPR002052); Has 1548 Blast hits to 1547 proteins in 538 species: Archae - 100; Bacteria - 698; Metazoa - 138; Fungi - 86; Plants - 85; Viruses - 0; Other Eukaryotes - 441 (source: NCBI BLink).  protein_id AT3G13440.1p  transcript_id AT3G13440.1  protein_id AT3G13440.1p  transcript_id AT3G13440.1  
At3g13445	chr3:004380317	0.0	W/4380317-4380393,4380486-4380573,4380802-4380873,4380972-4381022,4381156-4381200,4381289-4381381,4381487-4381588,4381695-4381768,4381869-4381869	AT3G13445.1  CDS  gene_syn TATA BINDING PROTEIN 1, TBP1, TFIID-1, TRANSCRIPTION FACTOR IID-1  gene TBP1  function TBP (TATA binding protein) associates with TAF(II)s (TBP-associated factors) to form the TFIID general transcription factor complex  go_component nucleus|GO:0005634||IEA  go_component transcription factor TFIID complex|GO:0005669||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process transcription initiation from RNA polymerase II promoter|GO:0006367||IEA  go_function DNA binding|GO:0003677||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  go_function binding|GO:0005488||IEA  go_function DNA binding|GO:0003677||ISS  go_function RNA polymerase II transcription factor activity|GO:0003702||ISS  product TBP1 (TATA BINDING PROTEIN 1); DNA binding / RNA polymerase II transcription factor/ binding  note TATA BINDING PROTEIN 1 (TBP1); FUNCTIONS IN: RNA polymerase II transcription factor activity, binding, DNA binding; INVOLVED IN: transcription initiation from RNA polymerase II promoter, regulation of transcription, DNA-dependent; LOCATED IN: nucleus, transcription factor TFIID complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TATA-box binding (InterPro:IPR000814), Beta2-adaptin/TATA-box binding, C-terminal (InterPro:IPR012295), Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal (InterPro:IPR012294); BEST Arabidopsis thaliana protein match is: TBP2 (TATA BINDING PROTEIN 2); DNA binding / RNA polymerase II transcription factor/ TATA-binding protein binding (TAIR:AT1G55520.2); Has 1656 Blast hits to 1293 proteins in 305 species: Archae - 476; Bacteria - 0; Metazoa - 520; Fungi - 144; Plants - 109; Viruses - 0; Other Eukaryotes - 407 (source: NCBI BLink).  protein_id AT3G13445.1p  transcript_id AT3G13445.1  protein_id AT3G13445.1p  transcript_id AT3G13445.1  
At3g13445	chr3:004380317	0.0	W/4380317-4380393,4380486-4380573,4380802-4380873,4380972-4381022,4381156-4381200,4381289-4381381,4381487-4381651	AT3G13445.2  CDS  gene_syn TATA BINDING PROTEIN 1, TBP1, TFIID-1, TRANSCRIPTION FACTOR IID-1  gene TBP1  function TBP (TATA binding protein) associates with TAF(II)s (TBP-associated factors) to form the TFIID general transcription factor complex  go_component nucleus|GO:0005634||IEA  go_component transcription factor TFIID complex|GO:0005669||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process transcription initiation from RNA polymerase II promoter|GO:0006367||IEA  go_function DNA binding|GO:0003677||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  go_function binding|GO:0005488||IEA  go_function DNA binding|GO:0003677||ISS  go_function RNA polymerase II transcription factor activity|GO:0003702||ISS  product TBP1 (TATA BINDING PROTEIN 1); DNA binding / RNA polymerase II transcription factor/ binding  note TATA BINDING PROTEIN 1 (TBP1); FUNCTIONS IN: RNA polymerase II transcription factor activity, binding, DNA binding; INVOLVED IN: transcription initiation from RNA polymerase II promoter, regulation of transcription, DNA-dependent; LOCATED IN: nucleus, transcription factor TFIID complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TATA-box binding (InterPro:IPR000814), Beta2-adaptin/TATA-box binding, C-terminal (InterPro:IPR012295), Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal (InterPro:IPR012294); BEST Arabidopsis thaliana protein match is: TBP2 (TATA BINDING PROTEIN 2); DNA binding / RNA polymerase II transcription factor/ TATA-binding protein binding (TAIR:AT1G55520.2); Has 2022 Blast hits to 1283 proteins in 304 species: Archae - 603; Bacteria - 0; Metazoa - 562; Fungi - 193; Plants - 194; Viruses - 0; Other Eukaryotes - 470 (source: NCBI BLink).  protein_id AT3G13445.2p  transcript_id AT3G13445.2  protein_id AT3G13445.2p  transcript_id AT3G13445.2  
At3g13450	chr3:004384126	0.0	C/4384126-4384295,4383891-4384038,4383749-4383808,4383613-4383670,4383436-4383533,4383264-4383353,4383121-4383189,4382958-4383044,4382793-4382888,4382638-4382715,4382459-4382545,4382340-4382375	AT3G13450.1  CDS  gene_syn DARK INDUCIBLE 4, DIN4  gene DIN4  function branched chain alpha-keto acid dehydrogenase E1 beta  go_function catalytic activity|GO:0003824||IEA  go_process response to light stimulus|GO:0009416|11080291|IEP  go_process response to sucrose stimulus|GO:0009744|11080291|IEP  go_function 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity|GO:0003863||ISS  product DIN4 (DARK INDUCIBLE 4); 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring)/ catalytic  note DARK INDUCIBLE 4 (DIN4); FUNCTIONS IN: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity, catalytic activity; INVOLVED IN: response to light stimulus, response to sucrose stimulus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, C-terminal (InterPro:IPR005476), Transketolase C-terminal-like (InterPro:IPR015941), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase, central region (InterPro:IPR005475); BEST Arabidopsis thaliana protein match is: BCDH BETA1 (BRANCHED-CHAIN ALPHA-KETO ACID DECARBOXYLASE E1 BETA SUBUNIT); 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring)/ catalytic (TAIR:AT1G55510.1); Has 10982 Blast hits to 10974 proteins in 1535 species: Archae - 101; Bacteria - 5722; Metazoa - 413; Fungi - 143; Plants - 227; Viruses - 0; Other Eukaryotes - 4376 (source: NCBI BLink).  protein_id AT3G13450.1p  transcript_id AT3G13450.1  protein_id AT3G13450.1p  transcript_id AT3G13450.1  
At3g13460	chr3:004388193	0.0	C/4388193-4388220,4387835-4387902,4387597-4387744,4387431-4387501,4386782-4387348,4386062-4386655,4385761-4385973,4385524-4385664,4385274-4385438	AT3G13460.2  CDS  gene_syn ECT2  gene ECT2  function Physically interacts with CIPK1.  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_function protein binding|GO:0005515|16113215|IPI  product ECT2; protein binding  note ECT2; FUNCTIONS IN: protein binding; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: YT521-B-like protein (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: ECT4 (TAIR:AT1G55500.1); Has 1416 Blast hits to 1313 proteins in 186 species: Archae - 0; Bacteria - 40; Metazoa - 791; Fungi - 175; Plants - 257; Viruses - 0; Other Eukaryotes - 153 (source: NCBI BLink).  protein_id AT3G13460.2p  transcript_id AT3G13460.2  protein_id AT3G13460.2p  transcript_id AT3G13460.2  
At3g13460	chr3:004388193	0.0	C/4388193-4388220,4387835-4387908,4387597-4387744,4387431-4387501,4386782-4387348,4386062-4386655,4385761-4385973,4385524-4385664,4385274-4385438	AT3G13460.4  CDS  gene_syn ECT2  gene ECT2  function Physically interacts with CIPK1.  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_function protein binding|GO:0005515|16113215|IPI  product ECT2; protein binding  note ECT2; FUNCTIONS IN: protein binding; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: YT521-B-like protein (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: ECT4 (TAIR:AT1G55500.1); Has 1421 Blast hits to 1319 proteins in 187 species: Archae - 0; Bacteria - 44; Metazoa - 790; Fungi - 177; Plants - 257; Viruses - 0; Other Eukaryotes - 153 (source: NCBI BLink).  protein_id AT3G13460.4p  transcript_id AT3G13460.4  protein_id AT3G13460.4p  transcript_id AT3G13460.4  
At3g13460	chr3:004388193	0.0	C/4388193-4388220,4387835-4387911,4387597-4387744,4387431-4387501,4386782-4387348,4386060-4386655,4385934-4385973	AT3G13460.3  CDS  gene_syn ECT2  gene ECT2  function Physically interacts with CIPK1.  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_function protein binding|GO:0005515|16113215|IPI  product ECT2; protein binding  note ECT2; FUNCTIONS IN: protein binding; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: YT521-B-like protein (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: ECT4 (TAIR:AT1G55500.1); Has 1138 Blast hits to 1040 proteins in 160 species: Archae - 0; Bacteria - 34; Metazoa - 653; Fungi - 125; Plants - 221; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT3G13460.3p  transcript_id AT3G13460.3  protein_id AT3G13460.3p  transcript_id AT3G13460.3  
At3g13460	chr3:004388193	0.0	C/4388193-4388220,4387835-4387911,4387597-4387744,4387431-4387501,4386782-4387348,4386062-4386655,4385761-4385973,4385524-4385664,4385274-4385438	AT3G13460.1  CDS  gene_syn ECT2  gene ECT2  function Physically interacts with CIPK1.  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_function protein binding|GO:0005515|16113215|IPI  product ECT2; protein binding  note ECT2; FUNCTIONS IN: protein binding; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: YT521-B-like protein (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: ECT4 (TAIR:AT1G55500.1); Has 1416 Blast hits to 1313 proteins in 187 species: Archae - 0; Bacteria - 42; Metazoa - 789; Fungi - 175; Plants - 257; Viruses - 0; Other Eukaryotes - 153 (source: NCBI BLink).  protein_id AT3G13460.1p  transcript_id AT3G13460.1  protein_id AT3G13460.1p  transcript_id AT3G13460.1  
At3g13470	chr3:004389685	0.0	W/4389685-4389888,4389971-4390096,4390181-4390318,4390400-4390495,4390587-4390829,4390903-4391137,4391255-4391424,4391517-4391594,4391686-4391757,4391842-4391946,4392028-4392120,4392204-4392296,4392388-4392511,4392611-4392624	AT3G13470.1  CDS  go_component nucleus|GO:0005634|14617066|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process protein folding|GO:0006457||IEA  go_process cellular protein metabolic process|GO:0044267||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  product chaperonin, putative  note chaperonin, putative; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: CPN60B (CHAPERONIN 60 BETA); ATP binding / protein binding (TAIR:AT1G55490.2); Has 24486 Blast hits to 24452 proteins in 5132 species: Archae - 390; Bacteria - 14009; Metazoa - 1525; Fungi - 954; Plants - 450; Viruses - 2; Other Eukaryotes - 7156 (source: NCBI BLink).  protein_id AT3G13470.1p  transcript_id AT3G13470.1  protein_id AT3G13470.1p  transcript_id AT3G13470.1  
At3g13480	chr3:004393388	0.0	C/4393388-4393848,4393184-4393241	AT3G13480.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55475.1); Has 43 Blast hits to 43 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G13480.1p  transcript_id AT3G13480.1  protein_id AT3G13480.1p  transcript_id AT3G13480.1  
At3g13490	chr3:004399030	0.0	C/4399030-4399302,4398724-4398942,4398478-4398589,4398282-4398390,4398127-4398184,4397877-4397945,4397689-4397796,4397457-4397549,4397255-4397359,4396946-4397152,4396778-4396872,4396544-4396634,4396225-4396401,4395984-4396076	AT3G13490.1  CDS  gene_syn ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, ATKRS-2, OVA5, OVULE ABORTION 5  gene OVA5  function Encodes a dual targeted lysyl-tRNA ligase that is found both in the mitochondrion and the chloroplast. Plants mutated in this gene exhibit an ovule abortion phenotype.  go_component chloroplast|GO:0009507|18431481|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function lysine-tRNA ligase activity|GO:0004824||IEA  go_function ATP binding|GO:0005524||IEA  go_component cytoplasm|GO:0005737||ISS  go_component mitochondrion|GO:0005739|16251277|IDA  go_component chloroplast|GO:0009507|16251277|IDA  go_process tRNA aminoacylation for protein translation|GO:0006418||ISS  go_process ovule development|GO:0048481|16297076|IMP  go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS  go_function ATP binding|GO:0005524||ISS  product OVA5 (OVULE ABORTION 5); ATP binding / aminoacyl-tRNA ligase/ lysine-tRNA ligase/ nucleic acid binding / nucleotide binding  note OVULE ABORTION 5 (OVA5); FUNCTIONS IN: aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding, nucleic acid binding, lysine-tRNA ligase activity; INVOLVED IN: ovule development, tRNA aminoacylation for protein translation; LOCATED IN: mitochondrion, chloroplast, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Aminoacyl-tRNA synthetase, class II, conserved region (InterPro:IPR006195), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D, K and N) (InterPro:IPR004364), Lysyl-tRNA synthetase, class II, C-terminal (InterPro:IPR018149), Aminoacyl-tRNA synthetase, class II (D, K and N)-like (InterPro:IPR018150), Lysyl-tRNA synthetase, class II (InterPro:IPR002313); BEST Arabidopsis thaliana protein match is: ATKRS-1 (ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 1); ATP binding / aminoacyl-tRNA ligase/ lysine-tRNA ligase/ nucleic acid binding / nucleotide binding (TAIR:AT3G11710.1); Has 17885 Blast hits to 14817 proteins in 1694 species: Archae - 261; Bacteria - 10112; Metazoa - 532; Fungi - 520; Plants - 128; Viruses - 0; Other Eukaryotes - 6332 (source: NCBI BLink).  protein_id AT3G13490.1p  transcript_id AT3G13490.1  protein_id AT3G13490.1p  transcript_id AT3G13490.1  
At3g13500	chr3:004399974	0.0	W/4399974-4400306	AT3G13500.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55365.1); Has 2702 Blast hits to 641 proteins in 106 species: Archae - 4; Bacteria - 494; Metazoa - 961; Fungi - 146; Plants - 87; Viruses - 10; Other Eukaryotes - 1000 (source: NCBI BLink).  protein_id AT3G13500.1p  transcript_id AT3G13500.1  protein_id AT3G13500.1p  transcript_id AT3G13500.1  
At3g13510	chr3:004403776	0.0	W/4403776-4403946,4404190-4404276,4404367-4404624,4404736-4404900,4404983-4405036,4405130-4405276,4405364-4405741	AT3G13510.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55360.1); Has 446 Blast hits to 409 proteins in 18 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 10; Plants - 430; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G13510.1p  transcript_id AT3G13510.1  protein_id AT3G13510.1p  transcript_id AT3G13510.1  
At3g13520	chr3:004409087	0.0	W/4409087-4409269	AT3G13520.1  CDS  gene_syn AGP12, ARABINOGALACTAN PROTEIN 12, ATAGP12  gene AGP12  function Encodes a GPI-anchored arabinogalactan (AG) peptide with a short  classical  backbone of 10 amino acids, seven of which are conserved among the 4 other Arabidopsis AG peptides. These peptides may be involved in cell signaling.  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  product AGP12 (ARABINOGALACTAN PROTEIN 12)  note ARABINOGALACTAN PROTEIN 12 (AGP12); INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: AGP21 (TAIR:AT1G55330.1); Has 29 Blast hits to 29 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G13520.1p  transcript_id AT3G13520.1  protein_id AT3G13520.1p  transcript_id AT3G13520.1  
At3g13525	chr3:004411168	0.0	W/4411168-4411253	AT3G13525.1  snoRNA  gene_syn 60560.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT3G13525.1  
At3g13530	chr3:004419261	0.0	C/4419261-4419320,4418955-4419089,4418819-4418839,4418583-4418656,4418415-4418505,4418265-4418348,4418041-4418142,4417746-4417877,4417522-4417593,4417309-4417412,4417071-4417170,4416561-4416923,4415852-4416184,4415729-4415773,4415357-4415536,4415156-4415239,4414780-4414877,4414614-4414697,4413668-4414398,4413205-4413584,4412965-4413099,4412445-4412851,4412199-4412313,4411934-4412110	AT3G13530.1  CDS  gene_syn MAP3K EPSILON PROTEIN KINASE, MAP3KE1, MAPKKK7  gene MAPKKK7  function MAP3K epsilon protein kinase 1 is functionally redundant with MAP3Ke2. Required for pollen development but not essential. map3ke1;map3ke2 double-mutant pollen grains develop plasma membrane irregularities following pollen mitosis I. Localized primarily in the plasma membrane. Expressed in leaf trichomes, root columella cells and developing ovules.  go_component plasma membrane|GO:0005886|17317660|IDA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function binding|GO:0005488||IEA  go_function ATP binding|GO:0005524||IEA  go_component cytosol|GO:0005829|16965555|IDA  go_component plasma membrane|GO:0005886|16965555|IDA  go_process plasma membrane organization|GO:0007009|16965555|IGI  go_process pollen development|GO:0009555|16965555|IGI  go_function kinase activity|GO:0016301||ISS  product MAPKKK7; ATP binding / binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note MAPKKK7; FUNCTIONS IN: in 6 functions; INVOLVED IN: plasma membrane organization, pollen development; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: ovule developmental stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: MAPKKK6; ATP binding / binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT3G07980.1); Has 99959 Blast hits to 98022 proteins in 3853 species: Archae - 75; Bacteria - 8582; Metazoa - 44361; Fungi - 8861; Plants - 19086; Viruses - 619; Other Eukaryotes - 18375 (source: NCBI BLink).  protein_id AT3G13530.1p  transcript_id AT3G13530.1  protein_id AT3G13530.1p  transcript_id AT3G13530.1  
At3g13540	chr3:004420239	0.0	W/4420239-4420534,4420990-4421443	AT3G13540.1  CDS  gene_syn ABC TRANSPORTER OF THE MITOCHONDRION 2, ATM2, ATMYB5, MYB DOMAIN PROTEIN 5  gene ATMYB5  function Encodes a member of the MYB family of transcriptional regulators. MYB5 act as a negative regulator of trichome branching and play a role in the correct formation of the seed coat and possibly the formation the underlying endosperm layers. Loss of function mutations have defects in seed coat mucilage and columella cells as well as trichome defects (smaller and reduced number of branches).  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_process seed germination|GO:0009845||NAS  go_process trichome differentiation|GO:0010026||NAS  go_process trichome morphogenesis|GO:0010090|19136646|IMP  go_process seed coat development|GO:0010214|19136646|IMP  go_process regulation of gene expression|GO:0010468|19136646|IEP  go_process mucilage biosynthetic process during seed coat development|GO:0048354|19136646|IMP  go_function DNA binding|GO:0003677|8635574|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ATMYB5 (MYB DOMAIN PROTEIN 5); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 5 (ATMYB5); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 7 processes; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: AtMYB17 (myb domain protein 17); DNA binding / transcription factor (TAIR:AT3G61250.1); Has 6281 Blast hits to 5784 proteins in 359 species: Archae - 0; Bacteria - 0; Metazoa - 686; Fungi - 288; Plants - 3801; Viruses - 3; Other Eukaryotes - 1503 (source: NCBI BLink).  protein_id AT3G13540.1p  transcript_id AT3G13540.1  protein_id AT3G13540.1p  transcript_id AT3G13540.1  
At3g13550	chr3:004424569	0.0	C/4424569-4424797,4424395-4424468,4423828-4424037	AT3G13550.2  CDS  gene_syn CIN4, CONSTITUTIVE PHOTOMORPHOGENIC 10, COP10, CYTOKININ-INSENSITIVE 4, E2 UBIQUITIN-CONJUGATING ENZYME, EMB144, EMBRYO DEFECTIVE 144, FUS9, FUSCA 9  gene FUS9  function Encodes a protein similar to ubiquitin-conjugating enzyme (E2) variant proteins (UEV); lacks catalytic cysteine residue found in ubiquitin-conjugating enzyme E2. Represses photomorphogenesis and induces skotomorphogenesis in the dark.  go_component nucleus|GO:0005634|11877375|IDA  go_process photomorphogenesis|GO:0009640|8038603|IMP  go_function ubiquitin-protein ligase activity|GO:0004842|11877375|ISS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|16844902|IPI  product FUS9 (FUSCA 9); protein binding / ubiquitin-protein ligase  note FUSCA 9 (FUS9); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: photomorphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC29 (ubiquitin-conjugating enzyme 29); ubiquitin-protein ligase (TAIR:AT2G16740.1); Has 7533 Blast hits to 7530 proteins in 305 species: Archae - 0; Bacteria - 0; Metazoa - 3691; Fungi - 1344; Plants - 1188; Viruses - 19; Other Eukaryotes - 1291 (source: NCBI BLink).  protein_id AT3G13550.2p  transcript_id AT3G13550.2  protein_id AT3G13550.2p  transcript_id AT3G13550.2  
At3g13550	chr3:004424569	0.0	C/4424569-4424797,4424395-4424468,4423890-4424037,4423569-4423666	AT3G13550.1  CDS  gene_syn CIN4, CONSTITUTIVE PHOTOMORPHOGENIC 10, COP10, CYTOKININ-INSENSITIVE 4, E2 UBIQUITIN-CONJUGATING ENZYME, EMB144, EMBRYO DEFECTIVE 144, FUS9, FUSCA 9  gene FUS9  function Encodes a protein similar to ubiquitin-conjugating enzyme (E2) variant proteins (UEV); lacks catalytic cysteine residue found in ubiquitin-conjugating enzyme E2. Represses photomorphogenesis and induces skotomorphogenesis in the dark.  go_component nucleus|GO:0005634|11877375|IDA  go_process photomorphogenesis|GO:0009640|8038603|IMP  go_function ubiquitin-protein ligase activity|GO:0004842|11877375|ISS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|16844902|IPI  product FUS9 (FUSCA 9); protein binding / ubiquitin-protein ligase  note FUSCA 9 (FUS9); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: photomorphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC29 (ubiquitin-conjugating enzyme 29); ubiquitin-protein ligase (TAIR:AT2G16740.1); Has 7630 Blast hits to 7627 proteins in 307 species: Archae - 0; Bacteria - 0; Metazoa - 3736; Fungi - 1358; Plants - 1194; Viruses - 19; Other Eukaryotes - 1323 (source: NCBI BLink).  protein_id AT3G13550.1p  transcript_id AT3G13550.1  protein_id AT3G13550.1p  transcript_id AT3G13550.1  
At3g13560	chr3:004427218	0.0	C/4427218-4427284,4425873-4427123,4425741-4425768,4425484-4425655	AT3G13560.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_component anchored to plasma membrane|GO:0046658|12805588|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative (TAIR:AT2G01630.1); Has 1780 Blast hits to 1728 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 32; Plants - 1744; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G13560.1p  transcript_id AT3G13560.1  protein_id AT3G13560.1p  transcript_id AT3G13560.1  
At3g13560	chr3:004427218	0.0	C/4427218-4427284,4425873-4427123,4425741-4425768,4425484-4425655	AT3G13560.2  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_component anchored to plasma membrane|GO:0046658|12805588|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative (TAIR:AT2G01630.1); Has 1780 Blast hits to 1728 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 32; Plants - 1744; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G13560.2p  transcript_id AT3G13560.2  protein_id AT3G13560.2p  transcript_id AT3G13560.2  
At3g13560	chr3:004427218	0.0	C/4427218-4427284,4425873-4427123,4425741-4425768,4425484-4425655	AT3G13560.3  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_component anchored to plasma membrane|GO:0046658|12805588|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative (TAIR:AT2G01630.1); Has 1780 Blast hits to 1728 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 32; Plants - 1744; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G13560.3p  transcript_id AT3G13560.3  protein_id AT3G13560.3p  transcript_id AT3G13560.3  
At3g13570	chr3:004431457	0.0	C/4431457-4431602,4431045-4431122,4430152-4430319,4429931-4430062,4429564-4429828	AT3G13570.1  CDS  gene_syn SCL30a  gene SCL30a  function encodes an SC35-like splicing factor of 30 kD that is localized to the nuclear specks.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component nuclear speck|GO:0016607|15133128|IDA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|12176998|TAS  go_process RNA splicing|GO:0008380|16807317|NAS  go_function RNA binding|GO:0003723||ISS  product SCL30a; RNA binding / nucleic acid binding / nucleotide binding  note SCL30a; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: SR33; RNA binding / protein binding (TAIR:AT1G55310.2); Has 20753 Blast hits to 15131 proteins in 614 species: Archae - 0; Bacteria - 910; Metazoa - 13351; Fungi - 2299; Plants - 2283; Viruses - 120; Other Eukaryotes - 1790 (source: NCBI BLink).  protein_id AT3G13570.1p  transcript_id AT3G13570.1  protein_id AT3G13570.1p  transcript_id AT3G13570.1  
At3g13580	chr3:004433809	0.0	W/4433809-4433988,4434075-4434172,4434271-4434328,4434415-4434494,4434592-4434694,4434894-4435109	AT3G13580.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_function transcription regulator activity|GO:0030528||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L7 (RPL7D)  note 60S ribosomal protein L7 (RPL7D); FUNCTIONS IN: structural constituent of ribosome, transcription regulator activity; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, chloroplast, large ribosomal subunit, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30, N-terminal (InterPro:IPR012988), Ribosomal protein L30p/L7e, N-terminal (InterPro:IPR000517), Ribosomal protein L7, eukaryotic (InterPro:IPR005998), Ribosomal protein L30 (InterPro:IPR018038), Ribosomal protein L30, ferredoxin-like fold domain (InterPro:IPR016082); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L7 (RPL7C) (TAIR:AT2G44120.2); Has 1005 Blast hits to 1003 proteins in 290 species: Archae - 145; Bacteria - 0; Metazoa - 405; Fungi - 148; Plants - 112; Viruses - 0; Other Eukaryotes - 195 (source: NCBI BLink).  protein_id AT3G13580.1p  transcript_id AT3G13580.1  protein_id AT3G13580.1p  transcript_id AT3G13580.1  
At3g13580	chr3:004433809	0.0	W/4433809-4433988,4434075-4434172,4434271-4434328,4434415-4434494,4434592-4434694,4434894-4435109	AT3G13580.2  CDS  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_function transcription regulator activity|GO:0030528||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L7 (RPL7D)  note 60S ribosomal protein L7 (RPL7D); FUNCTIONS IN: structural constituent of ribosome, transcription regulator activity; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30, N-terminal (InterPro:IPR012988), Ribosomal protein L30p/L7e, N-terminal (InterPro:IPR000517), Ribosomal protein L7, eukaryotic (InterPro:IPR005998), Ribosomal protein L30 (InterPro:IPR018038), Ribosomal protein L30, ferredoxin-like fold domain (InterPro:IPR016082); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L7 (RPL7C) (TAIR:AT2G44120.2); Has 1005 Blast hits to 1003 proteins in 290 species: Archae - 145; Bacteria - 0; Metazoa - 405; Fungi - 148; Plants - 112; Viruses - 0; Other Eukaryotes - 195 (source: NCBI BLink).  protein_id AT3G13580.2p  transcript_id AT3G13580.2  protein_id AT3G13580.2p  transcript_id AT3G13580.2  
At3g13580	chr3:004433809	0.0	W/4433809-4433988,4434075-4434172,4434271-4434328,4434415-4434494,4434592-4434694,4434894-4435109	AT3G13580.3  CDS  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_function transcription regulator activity|GO:0030528||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L7 (RPL7D)  note 60S ribosomal protein L7 (RPL7D); FUNCTIONS IN: structural constituent of ribosome, transcription regulator activity; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30, N-terminal (InterPro:IPR012988), Ribosomal protein L30p/L7e, N-terminal (InterPro:IPR000517), Ribosomal protein L7, eukaryotic (InterPro:IPR005998), Ribosomal protein L30 (InterPro:IPR018038), Ribosomal protein L30, ferredoxin-like fold domain (InterPro:IPR016082); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L7 (RPL7C) (TAIR:AT2G44120.2); Has 1005 Blast hits to 1003 proteins in 290 species: Archae - 145; Bacteria - 0; Metazoa - 405; Fungi - 148; Plants - 112; Viruses - 0; Other Eukaryotes - 195 (source: NCBI BLink).  protein_id AT3G13580.3p  transcript_id AT3G13580.3  protein_id AT3G13580.3p  transcript_id AT3G13580.3  
At3g13590	chr3:004437228	0.0	C/4437228-4437334,4435316-4436750	AT3G13590.1  CDS  go_process intracellular signaling cascade|GO:0007242||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular signaling cascade; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT5G42280.1); Has 1078 Blast hits to 462 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1068; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT3G13590.1p  transcript_id AT3G13590.1  protein_id AT3G13590.1p  transcript_id AT3G13590.1  
At3g13594	chr3:004441076	0.0	W/4441076-4441270	AT3G13594.1  CDS  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G13594.1p  transcript_id AT3G13594.1  protein_id AT3G13594.1p  transcript_id AT3G13594.1  
At3g13600	chr3:004445102	0.0	W/4445102-4445508,4445603-4445783,4445873-4445961,4446061-4446151,4446238-4446582,4446679-4447383	AT3G13600.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product calmodulin-binding family protein  note calmodulin-binding family protein; FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: calmodulin-binding family protein (TAIR:AT3G58480.1); Has 2681 Blast hits to 1630 proteins in 214 species: Archae - 2; Bacteria - 107; Metazoa - 1211; Fungi - 229; Plants - 174; Viruses - 58; Other Eukaryotes - 900 (source: NCBI BLink).  protein_id AT3G13600.1p  transcript_id AT3G13600.1  protein_id AT3G13600.1p  transcript_id AT3G13600.1  
At3g13610	chr3:004449448	0.0	W/4449448-4449959,4450043-4450616	AT3G13610.1  CDS  go_component cellular_component|GO:0005575||ND  go_process coumarin biosynthetic process|GO:0009805|18547395|IMP  go_process hydrogen peroxide-mediated programmed cell death|GO:0010421|16036580|IMP  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_process secondary metabolic process|GO:0019748||ISS  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  go_function dioxygenase activity|GO:0051213|18547395|IDA  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, dioxygenase activity; INVOLVED IN: coumarin biosynthetic process, response to cyclopentenone, hydrogen peroxide-mediated programmed cell death, secondary metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, 4 leaf senescence stage, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT1G55290.1); Has 6050 Blast hits to 6022 proteins in 692 species: Archae - 0; Bacteria - 724; Metazoa - 131; Fungi - 673; Plants - 3109; Viruses - 0; Other Eukaryotes - 1413 (source: NCBI BLink).  protein_id AT3G13610.1p  transcript_id AT3G13610.1  protein_id AT3G13610.1p  transcript_id AT3G13610.1  
At3g13620	chr3:004452289	0.0	C/4452289-4452556,4450904-4452072	AT3G13620.1  CDS  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_process amino acid transport|GO:0006865||IEA  go_function cationic amino acid transmembrane transporter activity|GO:0015326||ISS  product amino acid permease family protein  note amino acid permease family protein; FUNCTIONS IN: cationic amino acid transmembrane transporter activity; INVOLVED IN: transport, amino acid transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease-associated region (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: amino acid permease family protein (TAIR:AT3G19553.1); Has 9564 Blast hits to 9557 proteins in 1128 species: Archae - 228; Bacteria - 7367; Metazoa - 813; Fungi - 241; Plants - 268; Viruses - 0; Other Eukaryotes - 647 (source: NCBI BLink).  protein_id AT3G13620.1p  transcript_id AT3G13620.1  protein_id AT3G13620.1p  transcript_id AT3G13620.1  
At3g13624	chr3:004454219	0.0	C/4454219-4456010	AT3G13624.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At3g13630	chr3:004457038	0.0	W/4457038-4457070,4457174-4457345,4457423-4457511,4457612-4457683,4457774-4457989	AT3G13630.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G13630.1p  transcript_id AT3G13630.1  protein_id AT3G13630.1p  transcript_id AT3G13630.1  
At3g13630	chr3:004457038	0.0	W/4457038-4457070,4457174-4457345,4457423-4457511,4457774-4457989	AT3G13630.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G13630.2p  transcript_id AT3G13630.2  protein_id AT3G13630.2p  transcript_id AT3G13630.2  
At3g13640	chr3:004461221	0.0	C/4461221-4461323,4461065-4461150,4460878-4460975,4460678-4460795,4460491-4460580,4460104-4460408,4459810-4460005,4459542-4459727,4458956-4459465,4458751-4458870	AT3G13640.1  CDS  gene_syn ATRLI1  gene ATRLI1  function member of RLI subfamily  go_process response to salt stress|GO:0009651|11351099|IEP  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  product ATRLI1; transporter  note ATRLI1; FUNCTIONS IN: transporter activity; INVOLVED IN: response to salt stress; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ABC transporter-like (InterPro:IPR003439), 4Fe-4S ferredoxin, iron-sulphur binding, subgroup (InterPro:IPR001450), ATPase, AAA+ type, core (InterPro:IPR003593), 4Fe-4S ferredoxin, iron-sulpur binding domain (InterPro:IPR017896), 4Fe-4S ferredoxin, iron-sulphur binding, conserved site (InterPro:IPR017900), Possible metal-binding region in RNase L inhibitor, RLI (InterPro:IPR007209), ABC transporter, ABCE (InterPro:IPR013283), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATRLI2; transporter (TAIR:AT4G19210.1); Has 299915 Blast hits to 183472 proteins in 2435 species: Archae - 6330; Bacteria - 219006; Metazoa - 7417; Fungi - 2618; Plants - 2184; Viruses - 16; Other Eukaryotes - 62344 (source: NCBI BLink).  protein_id AT3G13640.1p  transcript_id AT3G13640.1  protein_id AT3G13640.1p  transcript_id AT3G13640.1  
At3g13650	chr3:004463056	0.0	W/4463056-4463616	AT3G13650.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_process lignan biosynthetic process|GO:0009807||ISS  go_function molecular_function|GO:0003674||ND  product disease resistance response  note disease resistance response; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lignan biosynthetic process, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: disease resistance response (TAIR:AT1G55210.1); Has 489 Blast hits to 488 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 489; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G13650.1p  transcript_id AT3G13650.1  protein_id AT3G13650.1p  transcript_id AT3G13650.1  
At3g13660	chr3:004465135	0.0	W/4465135-4465512	AT3G13660.1  CDS  go_component cellular_component|GO:0005575||ND  go_process defense response|GO:0006952||ISS  go_process lignan biosynthetic process|GO:0009807||ISS  go_function molecular_function|GO:0003674||ND  product disease resistance response  note disease resistance response; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lignan biosynthetic process, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: disease resistance response (TAIR:AT1G55210.1); Has 463 Blast hits to 462 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 463; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G13660.1p  transcript_id AT3G13660.1  protein_id AT3G13660.1p  transcript_id AT3G13660.1  
At3g13662	chr3:004467090	0.0	W/4467090-4467605,4468465-4468470	AT3G13662.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_process lignan biosynthetic process|GO:0009807||ISS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lignan biosynthetic process, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: disease resistance-responsive protein-related / dirigent protein-related (TAIR:AT5G49040.1); Has 496 Blast hits to 495 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 496; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G13662.1p  transcript_id AT3G13662.1  protein_id AT3G13662.1p  transcript_id AT3G13662.1  
At3g13670	chr3:004469434	0.0	W/4469434-4469817,4469923-4470051,4470161-4470234,4470352-4470421,4470511-4470566,4470791-4470862,4471013-4471107,4471180-4471246,4471335-4471464,4471552-4471770,4471867-4472009,4472165-4472339,4472427-4472517,4472627-4472784,4472888-4473076,4473175-4473234	AT3G13670.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G25760.1); Has 12090 Blast hits to 12038 proteins in 826 species: Archae - 10; Bacteria - 3127; Metazoa - 4213; Fungi - 955; Plants - 1425; Viruses - 207; Other Eukaryotes - 2153 (source: NCBI BLink).  protein_id AT3G13670.1p  transcript_id AT3G13670.1  protein_id AT3G13670.1p  transcript_id AT3G13670.1  
At3g13672	chr3:004474245	0.0	C/4474245-4474343,4473964-4474173,4473541-4473882	AT3G13672.1  CDS  go_component nucleus|GO:0005634||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_process multicellular organismal development|GO:0007275||IEA  go_component nucleus|GO:0005634||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_process multicellular organismal development|GO:0007275||ISS  go_function molecular_function|GO:0003674||ND  product seven in absentia (SINA) family protein  note seven in absentia (SINA) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: multicellular organismal development, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Seven in absentia protein, TRAF-like domain (InterPro:IPR018121), Seven in absentia protein (InterPro:IPR004162), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2); protein binding / ubiquitin-protein ligase/ zinc ion binding (TAIR:AT3G58040.1); Has 352 Blast hits to 352 proteins in 64 species: Archae - 0; Bacteria - 0; Metazoa - 218; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G13672.1p  transcript_id AT3G13672.1  protein_id AT3G13672.1p  transcript_id AT3G13672.1  
At3g13672	chr3:004474245	0.0	C/4474245-4474343,4473964-4474185,4473541-4473882	AT3G13672.2  CDS  go_component nucleus|GO:0005634||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_process multicellular organismal development|GO:0007275||IEA  go_component nucleus|GO:0005634||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_process multicellular organismal development|GO:0007275||ISS  go_function molecular_function|GO:0003674||ND  product seven in absentia (SINA) family protein  note seven in absentia (SINA) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: multicellular organismal development, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Seven in absentia protein, TRAF-like domain (InterPro:IPR018121), Seven in absentia protein (InterPro:IPR004162), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2); protein binding / ubiquitin-protein ligase/ zinc ion binding (TAIR:AT3G58040.1); Has 352 Blast hits to 352 proteins in 64 species: Archae - 0; Bacteria - 0; Metazoa - 218; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G13672.2p  transcript_id AT3G13672.2  protein_id AT3G13672.2p  transcript_id AT3G13672.2  
At3g13674	chr3:004475724	0.0	C/4475724-4475881,4475428-4475537,4475010-4475029	AT3G13674.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55205.1); Has 37 Blast hits to 37 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G13674.1p  transcript_id AT3G13674.1  protein_id AT3G13674.1p  transcript_id AT3G13674.1  
At3g13677	chr3:004476296	0.0	W/4476296-4476469,4476555-4476611	AT3G13677.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT3G13677.2p  transcript_id AT3G13677.2  protein_id AT3G13677.2p  transcript_id AT3G13677.2  
At3g13677	chr3:004476296	0.0	W/4476296-4476469,4476557-4476607,4476802-4477092	AT3G13677.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G13677.1p  transcript_id AT3G13677.1  protein_id AT3G13677.1p  transcript_id AT3G13677.1  
At3g13680	chr3:004477534	0.0	C/4477534-4478721	AT3G13680.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G17200.1); Has 654 Blast hits to 629 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 654; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G13680.1p  transcript_id AT3G13680.1  protein_id AT3G13680.1p  transcript_id AT3G13680.1  
At3g13682	chr3:004479979	0.0	C/4479979-4481509,4479193-4479902	AT3G13682.1  CDS  gene_syn LDL2, LSD1-LIKE2  gene LDL2  function Encodes a homolog of human Lysine-Specific Demethylase1. Involved in H3K4 methylation of target genes including the flowering loci FLC and FWA.  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process histone H3-K4 methylation|GO:0051568|17921315|IMP  go_function amine oxidase activity|GO:0008131||ISS  product LDL2 (LSD1-LIKE2); amine oxidase/ electron carrier/ oxidoreductase  note LSD1-LIKE2 (LDL2); FUNCTIONS IN: electron carrier activity, amine oxidase activity, oxidoreductase activity; INVOLVED IN: histone H3-K4 methylation; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), SWIRM (InterPro:IPR007526); BEST Arabidopsis thaliana protein match is: LDL1 (LSD1-LIKE1); amine oxidase/ electron carrier/ oxidoreductase (TAIR:AT1G62830.1); Has 4057 Blast hits to 3620 proteins in 592 species: Archae - 34; Bacteria - 1251; Metazoa - 1349; Fungi - 364; Plants - 289; Viruses - 0; Other Eukaryotes - 770 (source: NCBI BLink).  protein_id AT3G13682.1p  transcript_id AT3G13682.1  protein_id AT3G13682.1p  transcript_id AT3G13682.1  
At3g13686	chr3:004483848	0.0	W/4483848-4484060	AT3G13686.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G13686.1p  transcript_id AT3G13686.1  protein_id AT3G13686.1p  transcript_id AT3G13686.1  
At3g13690	chr3:004486920	0.0	W/4486920-4487106,4487208-4487374,4487472-4487566,4487710-4488752,4488888-4489048,4489146-4489222,4489309-4489456,4489529-4489678,4489778-4490011	AT3G13690.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase, active site (InterPro:IPR008266), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G55200.1); Has 81404 Blast hits to 80467 proteins in 3236 species: Archae - 44; Bacteria - 7601; Metazoa - 35853; Fungi - 6033; Plants - 18144; Viruses - 313; Other Eukaryotes - 13416 (source: NCBI BLink).  protein_id AT3G13690.1p  transcript_id AT3G13690.1  protein_id AT3G13690.1p  transcript_id AT3G13690.1  
At3g13700	chr3:004492351	0.0	C/4492351-4492632,4492234-4492296,4492074-4492155,4491911-4491985,4491751-4491823,4491618-4491660,4491345-4491460,4491163-4491232,4491008-4491094	AT3G13700.1  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA-binding protein, putative  note RNA-binding protein, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nucleic acid binding / nucleotide binding (TAIR:AT2G42240.3); Has 539 Blast hits to 520 proteins in 125 species: Archae - 2; Bacteria - 0; Metazoa - 265; Fungi - 138; Plants - 101; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT3G13700.1p  transcript_id AT3G13700.1  protein_id AT3G13700.1p  transcript_id AT3G13700.1  
At3g13700	chr3:004492405	0.0	C/4492405-4492632,4492234-4492296,4492074-4492155,4491911-4491985,4491751-4491823,4491618-4491660,4491345-4491460,4491163-4491232,4491012-4491094,4490859-4490889	AT3G13700.2  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA-binding protein, putative  note RNA-binding protein, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nucleic acid binding / nucleotide binding (TAIR:AT2G42240.1); Has 679 Blast hits to 599 proteins in 131 species: Archae - 2; Bacteria - 0; Metazoa - 293; Fungi - 184; Plants - 156; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT3G13700.2p  transcript_id AT3G13700.2  protein_id AT3G13700.2p  transcript_id AT3G13700.2  
At3g13710	chr3:004492992	0.0	C/4492992-4493558	AT3G13710.1  CDS  gene_syn PRA1.F4, PRENYLATED RAB ACCEPTOR 1.F4  gene PRA1.F4  go_component endoplasmic reticulum|GO:0005783|18583532|IDA  go_process vesicle-mediated transport|GO:0016192|18583532|IDA  go_function molecular_function|GO:0003674||ND  product PRA1.F4 (PRENYLATED RAB ACCEPTOR 1.F4)  note PRENYLATED RAB ACCEPTOR 1.F4 (PRA1.F4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: PRA8 (TAIR:AT3G13720.1); Has 294 Blast hits to 294 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 71; Fungi - 30; Plants - 172; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT3G13710.1p  transcript_id AT3G13710.1  protein_id AT3G13710.1p  transcript_id AT3G13710.1  
At3g13720	chr3:004495202	0.0	C/4495202-4495768	AT3G13720.1  CDS  gene_syn PRA1.F3, PRA8, PRENYLATED RAB ACCEPTOR 1.F3  gene PRA8  go_component endoplasmic reticulum|GO:0005783|18583532|IDA  go_process vesicle-mediated transport|GO:0016192|18583532|IDA  go_function molecular_function|GO:0003674||ND  product PRA8  note PRA8; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: PRA1.F4 (PRENYLATED RAB ACCEPTOR 1.F4) (TAIR:AT3G13710.1); Has 259 Blast hits to 259 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 20; Plants - 181; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT3G13720.1p  transcript_id AT3G13720.1  protein_id AT3G13720.1p  transcript_id AT3G13720.1  
At3g13724	chr3:004496822	0.0	C/4496822-4496918	AT3G13724.1  miRNA  gene_syn MICRORNA823A, MIR823A  gene MIR823A  function Encodes a microRNA that targets CMT3. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UGGGUGGUGAUCAUAUAAGAU  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR823A (MICRORNA823A); miRNA  transcript_id AT3G13724.1  
At3g13730	chr3:004500580	0.0	C/4500580-4500836,4500173-4500497,4499466-4499876,4499110-4499199,4498847-4499032,4498640-4498761,4498330-4498414	AT3G13730.1  CDS  gene_syn CYP90D1  gene CYP90D1  function Encodes a cytochrome P-450 gene that is involved in brassinosteroid biosynthesis, most likely in the conversion step of teasterone (TE) to 3-dehydroteasterone (3DT), and/or 6-deoxoteasterone (6-deoxoTE) to 6-deoxo-3-dehydroteasterone (6-deoxo3DT); or the conversion of cathasterone (CT) to TE, and/or 6-deoxocathasterone (6-deoxoCT) to 6-deoxoTE. Recently, CYP90D1 was shown to catalyse the C-23 hydroxylation of several brassinosteroids (the enzyme has a broad specificity for 22-hydroxylated substrates). Member of the CYP90C CYP450 family. Similar to Cytochrome P450 90C1 (ROT3).  go_component endomembrane system|GO:0012505||IEA  go_process brassinosteroid biosynthetic process|GO:0016132|15703058|IMP  go_process leaf development|GO:0048366|17138693|IGI  go_process petal development|GO:0048441|17138693|IGI  go_process stamen development|GO:0048443|17138693|IGI  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen|GO:0016709|17138693|IDA  go_function oxygen binding|GO:0019825||ISS  product CYP90D1; oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen / oxygen binding  note CYP90D1; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, oxygen binding; INVOLVED IN: stamen development, petal development, leaf development, brassinosteroid biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: ROT3 (ROTUNDIFOLIA 3); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen / oxygen binding / steroid hydroxylase (TAIR:AT4G36380.1); Has 19823 Blast hits to 19785 proteins in 1148 species: Archae - 51; Bacteria - 2723; Metazoa - 9021; Fungi - 2643; Plants - 4316; Viruses - 6; Other Eukaryotes - 1063 (source: NCBI BLink).  protein_id AT3G13730.1p  transcript_id AT3G13730.1  protein_id AT3G13730.1p  transcript_id AT3G13730.1  
At3g13740	chr3:004504310	0.0	W/4504310-4504505,4504671-4504801,4504990-4505079,4505244-4505296,4505441-4505543,4505648-4505795,4505915-4505937	AT3G13740.1  CDS  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_function ribonuclease III activity|GO:0004525||IEA  product URF 4-related  note URF 4-related; FUNCTIONS IN: RNA binding, ribonuclease III activity; INVOLVED IN: RNA processing; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease III (InterPro:IPR000999); BEST Arabidopsis thaliana protein match is: RNA binding / ribonuclease III (TAIR:AT1G55140.1); Has 698 Blast hits to 697 proteins in 302 species: Archae - 0; Bacteria - 571; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).  protein_id AT3G13740.1p  transcript_id AT3G13740.1  protein_id AT3G13740.1p  transcript_id AT3G13740.1  
At3g13750	chr3:004511192	0.0	W/4511192-4511380,4511514-4511609,4511705-4511817,4511930-4511996,4512125-4512217,4512323-4512466,4512800-4512888,4512970-4513075,4513181-4513268,4513357-4513475,4513562-4513726,4513844-4514022,4514137-4514246,4514336-4514445,4514538-4514648,4514737-4514847,4514940-4515145,4515232-4515568,4515646-4515756	AT3G13750.1  CDS  gene_syn BGAL1, Beta galactosidase 1, beta-galactosidase 1  gene BGAL1  function beta-galactosidase, glycosyl hydrolase family 35  go_component cell wall|GO:0005618|15593128|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function catalytic activity|GO:0003824||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function sugar binding|GO:0005529||IEA  go_function heme binding|GO:0020037||IEA  go_function cation binding|GO:0043169||IEA  go_function beta-galactosidase activity|GO:0004565||ISS  product BGAL1 (Beta galactosidase 1); beta-galactosidase/ catalytic/ cation binding / heme binding / peroxidase/ sugar binding  note Beta galactosidase 1 (BGAL1); FUNCTIONS IN: in 6 functions; INVOLVED IN: response to oxidative stress, carbohydrate metabolic process; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: BGAL3 (beta-galactosidase 3); beta-galactosidase/ catalytic/ cation binding / sugar binding (TAIR:AT4G36360.1); Has 1267 Blast hits to 1219 proteins in 253 species: Archae - 11; Bacteria - 343; Metazoa - 348; Fungi - 119; Plants - 383; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT3G13750.1p  transcript_id AT3G13750.1  protein_id AT3G13750.1p  transcript_id AT3G13750.1  
At3g13760	chr3:004517517	0.0	W/4517517-4519475	AT3G13760.1  CDS  go_component membrane|GO:0016020|17432890|IDA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: membrane; EXPRESSED IN: root, leaf; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT1G35610.1); Has 1028 Blast hits to 472 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 0; Plants - 1001; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT3G13760.1p  transcript_id AT3G13760.1  protein_id AT3G13760.1p  transcript_id AT3G13760.1  
At3g13770	chr3:004519647	0.0	W/4519647-4521533	AT3G13770.1  CDS  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G57430.1); Has 13774 Blast hits to 4973 proteins in 150 species: Archae - 0; Bacteria - 2; Metazoa - 36; Fungi - 36; Plants - 13469; Viruses - 0; Other Eukaryotes - 231 (source: NCBI BLink).  protein_id AT3G13770.1p  transcript_id AT3G13770.1  protein_id AT3G13770.1p  transcript_id AT3G13770.1  
At3g13772	chr3:004524275	0.0	C/4524275-4524394,4523760-4523924,4523573-4523682,4523363-4523471,4523171-4523283,4522946-4523096,4521712-4522869	AT3G13772.1  CDS  go_component plasma membrane|GO:0005886|17151019|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component integral to membrane|GO:0016021||ISS  product endomembrane protein 70, putative  note endomembrane protein 70, putative; LOCATED IN: integral to membrane, Golgi apparatus, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: endomembrane protein 70, putative (TAIR:AT1G55130.1); Has 1018 Blast hits to 1005 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 446; Fungi - 142; Plants - 240; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink).  protein_id AT3G13772.1p  transcript_id AT3G13772.1  protein_id AT3G13772.1p  transcript_id AT3G13772.1  
At3g13780	chr3:004525108	0.0	W/4525108-4525540,4525718-4526214	AT3G13780.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984); Has 14184 Blast hits to 8674 proteins in 364 species: Archae - 7; Bacteria - 1751; Metazoa - 6167; Fungi - 1701; Plants - 645; Viruses - 191; Other Eukaryotes - 3722 (source: NCBI BLink).  protein_id AT3G13780.1p  transcript_id AT3G13780.1  protein_id AT3G13780.1p  transcript_id AT3G13780.1  
At3g13782	chr3:004526660	0.0	W/4526660-4526735,4526932-4527008,4527068-4527151,4527236-4527328,4527406-4527510,4527601-4527788,4527866-4528067,4528149-4528192,4528278-4528398	AT3G13782.1  CDS  gene_syn NAP1;4, NFA04, NFA4, NUCLEOSOME ASSEMBLY PROTEIN1;4, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 04, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 4  gene NAP1;4  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component nucleus|GO:0005634|19228338|IDA  go_component nucleus|GO:0005634||ISS  go_component cytoplasm|GO:0005737|19228338|IDA  go_process nucleotide-excision repair|GO:0006289|19228338|IPI  go_process nucleosome assembly|GO:0006334||ISS  go_function DNA binding|GO:0003677||ISS  go_function chromatin binding|GO:0003682|19228338|IDA  product NAP1;4 (NUCLEOSOME ASSEMBLY PROTEIN1;4); DNA binding / chromatin binding  note NUCLEOSOME ASSEMBLY PROTEIN1;4 (NAP1;4); FUNCTIONS IN: chromatin binding, DNA binding; INVOLVED IN: response to cadmium ion, nucleosome assembly, nucleotide-excision repair; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Nucleosome assembly protein (NAP) (InterPro:IPR002164); BEST Arabidopsis thaliana protein match is: NAP1;3 (NUCLEOSOME ASSEMBLY PROTEIN 1;3); DNA binding (TAIR:AT5G56950.1); Has 1278 Blast hits to 1258 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 843; Fungi - 141; Plants - 115; Viruses - 0; Other Eukaryotes - 179 (source: NCBI BLink).  protein_id AT3G13782.1p  transcript_id AT3G13782.1  protein_id AT3G13782.1p  transcript_id AT3G13782.1  
At3g13784	chr3:004530501	0.0	C/4530501-4530669,4529372-4530243,4528795-4529289,4528529-4528702	AT3G13784.1  CDS  gene_syn Arabidopsis thaliana cell wall invertase 5, AtcwINV5  gene AtcwINV5  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process sucrose catabolic process, using beta-fructofuranosidase|GO:0019575||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product AtcwINV5 (Arabidopsis thaliana cell wall invertase 5); hydrolase, hydrolyzing O-glycosyl compounds  note Arabidopsis thaliana cell wall invertase 5 (AtcwINV5); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 32 (InterPro:IPR001362), Glycosyl hydrolases family 32, N-terminal (InterPro:IPR013148), Glycosyl hydrolase family 32, C-terminal (InterPro:IPR013189), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: ATBFRUCT1; beta-fructofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT3G13790.1); Has 2197 Blast hits to 2162 proteins in 631 species: Archae - 4; Bacteria - 1180; Metazoa - 5; Fungi - 194; Plants - 635; Viruses - 0; Other Eukaryotes - 179 (source: NCBI BLink).  protein_id AT3G13784.1p  transcript_id AT3G13784.1  protein_id AT3G13784.1p  transcript_id AT3G13784.1  
At3g13790	chr3:004535636	0.0	C/4535636-4535831,4535501-4535509,4534364-4535235,4534118-4534279,4533790-4534037,4533513-4533600,4533084-4533263	AT3G13790.1  CDS  gene_syn ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, ATBFRUCT1, ATCWINV1  gene ATBFRUCT1  function Encodes a protein with invertase activity.  go_component cell wall|GO:0005618|15593128|IDA  go_process response to wounding|GO:0009611|16339783|IMP  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function beta-fructofuranosidase activity|GO:0004564|16339783|IMP  go_function beta-fructofuranosidase activity|GO:0004564||IDA  product ATBFRUCT1; beta-fructofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds  note ATBFRUCT1; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, beta-fructofuranosidase activity; INVOLVED IN: response to wounding; LOCATED IN: cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 32 (InterPro:IPR001362), Glycoside hydrolase, family 32, active site (InterPro:IPR018053), Glycosyl hydrolases family 32, N-terminal (InterPro:IPR013148), Glycosyl hydrolase family 32, C-terminal (InterPro:IPR013189), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: ATFRUCT5 (BETA-FRUCTOFURANOSIDASE 5); hydrolase, hydrolyzing O-glycosyl compounds / levanase (TAIR:AT1G55120.1); Has 2233 Blast hits to 2203 proteins in 634 species: Archae - 4; Bacteria - 1199; Metazoa - 5; Fungi - 193; Plants - 637; Viruses - 0; Other Eukaryotes - 195 (source: NCBI BLink).  protein_id AT3G13790.1p  transcript_id AT3G13790.1  protein_id AT3G13790.1p  transcript_id AT3G13790.1  
At3g13800	chr3:004538879	0.0	W/4538879-4539065,4539313-4539440,4539537-4539649,4539784-4539825,4540058-4540113,4540246-4540322,4540408-4540530,4540630-4540706,4540799-4540862,4540956-4541006,4541104-4541152,4541248-4541366	AT3G13800.1  CDS  go_component chloroplast|GO:0009507||IEA  go_function hydrolase activity|GO:0016787||IEA  go_process metabolic process|GO:0008152||ISS  go_function catalytic activity|GO:0003824||ISS  product metallo-beta-lactamase family protein  note metallo-beta-lactamase family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30300.1); Has 2111 Blast hits to 2093 proteins in 437 species: Archae - 41; Bacteria - 761; Metazoa - 7; Fungi - 19; Plants - 53; Viruses - 0; Other Eukaryotes - 1230 (source: NCBI BLink).  protein_id AT3G13800.1p  transcript_id AT3G13800.1  protein_id AT3G13800.1p  transcript_id AT3G13800.1  
At3g13800	chr3:004539372	0.0	W/4539372-4539440,4539537-4539649,4539784-4539825,4540058-4540113,4540246-4540322,4540408-4540530,4540630-4540706,4540799-4540862,4540956-4541006,4541104-4541152,4541248-4541366	AT3G13800.2  CDS  go_component chloroplast|GO:0009507||IEA  go_function hydrolase activity|GO:0016787||IEA  go_process metabolic process|GO:0008152||ISS  go_function catalytic activity|GO:0003824||ISS  product metallo-beta-lactamase family protein  note metallo-beta-lactamase family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30300.1); Has 2077 Blast hits to 2059 proteins in 436 species: Archae - 38; Bacteria - 755; Metazoa - 7; Fungi - 19; Plants - 53; Viruses - 0; Other Eukaryotes - 1205 (source: NCBI BLink).  protein_id AT3G13800.2p  transcript_id AT3G13800.2  protein_id AT3G13800.2p  transcript_id AT3G13800.2  
At3g13810	chr3:004544941	0.0	W/4544941-4545178,4545518-4545917,4546397-4547300	AT3G13810.1  CDS  gene_syn Arabidopsis thaliana Indeterminate(ID)-Domain 11, AtIDD11  gene AtIDD11  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product AtIDD11 (Arabidopsis thaliana Indeterminate(ID)-Domain 11); nucleic acid binding / transcription factor/ zinc ion binding  note Arabidopsis thaliana Indeterminate(ID)-Domain 11 (AtIDD11); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: AtIDD7 (Arabidopsis thaliana Indeterminate(ID)-Domain 7); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT1G55110.1); Has 46742 Blast hits to 18955 proteins in 244 species: Archae - 0; Bacteria - 8; Metazoa - 41855; Fungi - 293; Plants - 408; Viruses - 0; Other Eukaryotes - 4178 (source: NCBI BLink).  protein_id AT3G13810.1p  transcript_id AT3G13810.1  protein_id AT3G13810.1p  transcript_id AT3G13810.1  
At3g13820	chr3:004549616	0.0	W/4549616-4550863	AT3G13820.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G13680.1); Has 630 Blast hits to 605 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 622; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G13820.1p  transcript_id AT3G13820.1  protein_id AT3G13820.1p  transcript_id AT3G13820.1  
At3g13825	chr3:004552524	0.0	W/4552524-4553382	AT3G13825.1  pseudogenic_transcript  pseudo  function pseudogene of F-box family protein  
At3g13830	chr3:004553943	0.0	W/4553943-4555076	AT3G13830.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G11810.1); Has 520 Blast hits to 497 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 520; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G13830.1p  transcript_id AT3G13830.1  protein_id AT3G13830.1p  transcript_id AT3G13830.1  
At3g13840	chr3:004555305	0.0	C/4555305-4556837	AT3G13840.1  CDS  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product scarecrow transcription factor family protein  note scarecrow transcription factor family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, leaf whorl, sepal, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: scarecrow transcription factor family protein (TAIR:AT3G49950.1); Has 1136 Blast hits to 1129 proteins in 160 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1134; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G13840.1p  transcript_id AT3G13840.1  protein_id AT3G13840.1p  transcript_id AT3G13840.1  
At3g13845	chr3:004557526	0.0	C/4557526-4557738	AT3G13845.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 11 Blast hits to 11 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G13845.1p  transcript_id AT3G13845.1  protein_id AT3G13845.1p  transcript_id AT3G13845.1  
At3g13850	chr3:004559910	0.0	W/4559910-4560716	AT3G13850.1  CDS  gene_syn LBD22, LOB DOMAIN-CONTAINING PROTEIN 22  gene LBD22  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product LBD22 (LOB DOMAIN-CONTAINING PROTEIN 22)  note LOB DOMAIN-CONTAINING PROTEIN 22 (LBD22); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD27 (LOB DOMAIN-CONTAINING PROTEIN 27) (TAIR:AT3G47870.1); Has 492 Blast hits to 489 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 490; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G13850.1p  transcript_id AT3G13850.1  protein_id AT3G13850.1p  transcript_id AT3G13850.1  
At3g13855	chr3:004560655	0.0	W/4560655-4561570	AT3G13855.1  snRNA  gene_syn 60517.SNRNA00001, U6 SMALL NUCLEOLAR RNA 26, U6-26  gene U6-26  go_component snRNP U6|GO:0005688||TAS  go_process nuclear mRNA splicing, via spliceosome|GO:0000398||TAS  go_function RNA splicing factor activity, transesterification mechanism|GO:0031202||TAS  product U6-26 (U6 SMALL NUCLEOLAR RNA 26); snRNA  note gi|16517|emb|X52528.1|ATSNU626 Arabidopsis thaliana U6-26 snRNA gene  transcript_id AT3G13855.1  
At3g13857	chr3:004561171	0.0	W/4561171-4561299	AT3G13857.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G13857.1p  transcript_id AT3G13857.1  protein_id AT3G13857.1p  transcript_id AT3G13857.1  
At3g13860	chr3:004565096	0.0	C/4565096-4565133,4564954-4564975,4564503-4564634,4564240-4564399,4563952-4564127,4563765-4563860,4563579-4563683,4563415-4563501,4563127-4563297,4562980-4563048,4562826-4562903,4562630-4562725,4562450-4562549,4562262-4562365,4562067-4562172,4561897-4561975,4561704-4561803	AT3G13860.1  CDS  gene_syn HEAT SHOCK PROTEIN 60-3A, HSP60-3A  gene HSP60-3A  go_component mitochondrion|GO:0005739|15276431|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  product HSP60-3A (HEAT SHOCK PROTEIN 60-3A); ATP binding / protein binding  note HEAT SHOCK PROTEIN 60-3A (HSP60-3A); FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: HSP60 (HEAT SHOCK PROTEIN 60); ATP binding (TAIR:AT3G23990.1); Has 24236 Blast hits to 24217 proteins in 5120 species: Archae - 378; Bacteria - 14012; Metazoa - 1390; Fungi - 947; Plants - 418; Viruses - 2; Other Eukaryotes - 7089 (source: NCBI BLink).  protein_id AT3G13860.1p  transcript_id AT3G13860.1  protein_id AT3G13860.1p  transcript_id AT3G13860.1  
At3g13870	chr3:004570242	0.0	C/4570242-4570261,4570054-4570156,4569732-4569802,4569571-4569634,4569423-4569488,4569294-4569341,4569158-4569220,4569017-4569073,4568726-4568884,4568570-4568638,4568389-4568480,4568176-4568254,4567869-4568034,4567637-4567761,4567261-4567523,4567074-4567170,4566813-4566974,4566599-4566703,4566287-4566381,4566088-4566184,4565762-4565977	AT3G13870.2  CDS  gene_syn RHD3, ROOT HAIR DEFECTIVE 3  gene RHD3  function required for regulated cell expansion and normal root hair development. Encodes an evolutionarily conserved protein with putative GTP-binding motifs that is implicated in the control of vesicle trafficking between the endoplasmic reticulum and the Golgi compartments.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process ER to Golgi vesicle-mediated transport|GO:0006888|14731265|IMP  go_process plant-type cell wall biogenesis|GO:0009832|12844267|IMP  go_process cell tip growth|GO:0009932|12354956|IMP  go_process root epidermal cell differentiation|GO:0010053|15908600|IMP  go_process actin cytoskeleton organization|GO:0030036|12844267|IMP  go_function GTP binding|GO:0005525|12068108|ISS  product RHD3 (ROOT HAIR DEFECTIVE 3); GTP binding  note ROOT HAIR DEFECTIVE 3 (RHD3); FUNCTIONS IN: GTP binding; INVOLVED IN: root epidermal cell differentiation, plant-type cell wall biogenesis, ER to Golgi vesicle-mediated transport, cell tip growth, actin cytoskeleton organization; LOCATED IN: endoplasmic reticulum, plasma membrane, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Root hair defective 3 GTP-binding (InterPro:IPR008803); BEST Arabidopsis thaliana protein match is: root hair defective 3 GTP-binding (RHD3) family protein (TAIR:AT1G72960.1); Has 232 Blast hits to 228 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 104; Plants - 58; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT3G13870.2p  transcript_id AT3G13870.2  protein_id AT3G13870.2p  transcript_id AT3G13870.2  
At3g13870	chr3:004571106	0.0	C/4571106-4571109,4570407-4570547,4570246-4570312,4570054-4570156,4569732-4569802,4569571-4569634,4569423-4569488,4569294-4569341,4569158-4569220,4569017-4569073,4568726-4568884,4568570-4568638,4568389-4568480,4568176-4568254,4567869-4568034,4567637-4567761,4567261-4567523,4567074-4567170,4566813-4566974,4566599-4566703,4566287-4566381,4566088-4566184,4565762-4565977	AT3G13870.1  CDS  gene_syn RHD3, ROOT HAIR DEFECTIVE 3  gene RHD3  function required for regulated cell expansion and normal root hair development. Encodes an evolutionarily conserved protein with putative GTP-binding motifs that is implicated in the control of vesicle trafficking between the endoplasmic reticulum and the Golgi compartments.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process ER to Golgi vesicle-mediated transport|GO:0006888|14731265|IMP  go_process plant-type cell wall biogenesis|GO:0009832|12844267|IMP  go_process cell tip growth|GO:0009932|12354956|IMP  go_process root epidermal cell differentiation|GO:0010053|15908600|IMP  go_process actin cytoskeleton organization|GO:0030036|12844267|IMP  go_function GTP binding|GO:0005525|12068108|ISS  product RHD3 (ROOT HAIR DEFECTIVE 3); GTP binding  note ROOT HAIR DEFECTIVE 3 (RHD3); FUNCTIONS IN: GTP binding; INVOLVED IN: root epidermal cell differentiation, plant-type cell wall biogenesis, ER to Golgi vesicle-mediated transport, cell tip growth, actin cytoskeleton organization; LOCATED IN: endoplasmic reticulum, plasma membrane, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Root hair defective 3 GTP-binding (InterPro:IPR008803); BEST Arabidopsis thaliana protein match is: root hair defective 3 GTP-binding (RHD3) family protein (TAIR:AT1G72960.1); Has 333 Blast hits to 329 proteins in 126 species: Archae - 0; Bacteria - 2; Metazoa - 54; Fungi - 104; Plants - 59; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).  protein_id AT3G13870.1p  transcript_id AT3G13870.1  protein_id AT3G13870.1p  transcript_id AT3G13870.1  
At3g13880	chr3:004572180	0.0	W/4572180-4574426	AT3G13880.1  CDS  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G27610.1); Has 17516 Blast hits to 5182 proteins in 164 species: Archae - 0; Bacteria - 2; Metazoa - 134; Fungi - 66; Plants - 16945; Viruses - 0; Other Eukaryotes - 369 (source: NCBI BLink).  protein_id AT3G13880.1p  transcript_id AT3G13880.1  protein_id AT3G13880.1p  transcript_id AT3G13880.1  
At3g13882	chr3:004574521	0.0	W/4574521-4574622,4574681-4574876,4574988-4575016,4575326-4575531,4575780-4575852	AT3G13882.2  CDS  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  product structural constituent of ribosome  note structural constituent of ribosome; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34 (InterPro:IPR000271).  protein_id AT3G13882.2p  transcript_id AT3G13882.2  protein_id AT3G13882.2p  transcript_id AT3G13882.2  
At3g13882	chr3:004574600	0.0	W/4574600-4574876,4575438-4575531,4575780-4575852	AT3G13882.1  CDS  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  product structural constituent of ribosome  note structural constituent of ribosome; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34 (InterPro:IPR000271); Has 2843 Blast hits to 2843 proteins in 1218 species: Archae - 0; Bacteria - 2556; Metazoa - 6; Fungi - 43; Plants - 21; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).  protein_id AT3G13882.1p  transcript_id AT3G13882.1  protein_id AT3G13882.1p  transcript_id AT3G13882.1  
At3g13890	chr3:004577868	0.0	C/4577868-4578027,4577657-4577786,4576744-4577557	AT3G13890.1  CDS  gene_syn ATMYB26, MALE STERILE 35, MS35, MYB DOMAIN PROTEIN 26, MYB26, myb domain protein 26  gene ATMYB26  function Encodes a putative transcription factor (MYB26). Mutants produces fertile pollen but plants are sterile because anthers do not dehisce. The cellulosic secondary wall thickenings are not formed in the endothecium as they are in non-mutant plants.  go_component nucleus|GO:0005634|17329564|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process secondary cell wall biogenesis|GO:0009834|17329564|IMP  go_process anther dehiscence|GO:0009901||IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ATMYB26 (MYB DOMAIN PROTEIN 26); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 26 (ATMYB26); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to gibberellin stimulus, anther dehiscence, secondary cell wall biogenesis, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB55 (myb domain protein 55); DNA binding / transcription factor (TAIR:AT4G01680.2); Has 6115 Blast hits to 5749 proteins in 350 species: Archae - 0; Bacteria - 0; Metazoa - 616; Fungi - 258; Plants - 3711; Viruses - 3; Other Eukaryotes - 1527 (source: NCBI BLink).  protein_id AT3G13890.1p  transcript_id AT3G13890.1  protein_id AT3G13890.1p  transcript_id AT3G13890.1  
At3g13890	chr3:004577895	0.0	C/4577895-4578027,4577657-4577786,4576744-4577557	AT3G13890.2  CDS  gene_syn ATMYB26, MALE STERILE 35, MS35, MYB DOMAIN PROTEIN 26, MYB26, myb domain protein 26  gene ATMYB26  function Encodes a putative transcription factor (MYB26). Mutants produces fertile pollen but plants are sterile because anthers do not dehisce. The cellulosic secondary wall thickenings are not formed in the endothecium as they are in non-mutant plants.  go_component nucleus|GO:0005634|17329564|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process secondary cell wall biogenesis|GO:0009834|17329564|IMP  go_process anther dehiscence|GO:0009901||IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ATMYB26 (MYB DOMAIN PROTEIN 26); DNA binding / transcription factor  note myb domain protein 26 (MYB26); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to gibberellin stimulus, anther dehiscence, secondary cell wall biogenesis, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: AtMYB103 (myb domain protein 103); DNA binding / transcription activator/ transcription factor (TAIR:AT1G63910.1); Has 6214 Blast hits to 5826 proteins in 354 species: Archae - 0; Bacteria - 0; Metazoa - 610; Fungi - 286; Plants - 3728; Viruses - 3; Other Eukaryotes - 1587 (source: NCBI BLink).  protein_id AT3G13890.2p  transcript_id AT3G13890.2  protein_id AT3G13890.2p  transcript_id AT3G13890.2  
At3g13900	chr3:004586151	0.0	W/4586151-4587979,4588063-4588173,4588259-4588535,4588623-4588711,4588815-4588902,4588999-4589208,4589289-4589414,4589500-4589598,4589696-4589887,4589971-4590681	AT3G13900.1  CDS  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process ATP biosynthetic process|GO:0006754||IEA  go_process phospholipid transport|GO:0015914||IEA  go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662||ISS  product ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism  note ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: ATP biosynthetic process, phospholipid transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, phospholipid-translocating, flippase (InterPro:IPR006539), ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), HAD superfamily hydrolase-like, type 3 (InterPro:IPR013200), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: haloacid dehalogenase-like hydrolase family protein (TAIR:AT1G54280.1); Has 8696 Blast hits to 7522 proteins in 917 species: Archae - 76; Bacteria - 1898; Metazoa - 3144; Fungi - 1407; Plants - 516; Viruses - 3; Other Eukaryotes - 1652 (source: NCBI BLink).  protein_id AT3G13900.1p  transcript_id AT3G13900.1  protein_id AT3G13900.1p  transcript_id AT3G13900.1  
At3g13910	chr3:004591124	0.0	C/4591124-4591432	AT3G13910.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19460.1); Has 117 Blast hits to 117 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G13910.1p  transcript_id AT3G13910.1  protein_id AT3G13910.1p  transcript_id AT3G13910.1  
At3g13920	chr3:004594057	0.0	C/4594057-4594094,4593873-4593976,4593352-4593782,4592635-4593270	AT3G13920.3  CDS  gene_syn EIF4A1, EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1, RH4, TIF4A1  gene EIF4A1  function eukaryotic translation initiation factor 4A-1  go_component membrane|GO:0016020|17432890|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process translational initiation|GO:0006413|1398145|ISS  go_function translation initiation factor activity|GO:0003743||ISS  go_function ATP-dependent helicase activity|GO:0008026||ISS  product EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1); ATP-dependent helicase/ translation initiation factor  note EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1 (EIF4A1); FUNCTIONS IN: translation initiation factor activity, ATP-dependent helicase activity; INVOLVED IN: translational initiation; LOCATED IN: cytosol, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: EIF4A-2; ATP-dependent helicase/ translation initiation factor (TAIR:AT1G54270.1); Has 31975 Blast hits to 31564 proteins in 1786 species: Archae - 474; Bacteria - 14457; Metazoa - 5038; Fungi - 3342; Plants - 1394; Viruses - 16; Other Eukaryotes - 7254 (source: NCBI BLink).  protein_id AT3G13920.3p  transcript_id AT3G13920.3  protein_id AT3G13920.3p  transcript_id AT3G13920.3  
At3g13920	chr3:004594061	0.0	C/4594061-4594128,4593873-4593976,4593352-4593782,4592635-4593270	AT3G13920.1  CDS  gene_syn EIF4A1, EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1, RH4, TIF4A1  gene EIF4A1  function eukaryotic translation initiation factor 4A-1  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytosol|GO:0005829|18433157|IDA  go_process translational initiation|GO:0006413|1398145|ISS  go_function translation initiation factor activity|GO:0003743||ISS  go_function ATP-dependent helicase activity|GO:0008026||ISS  product EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1); ATP-dependent helicase/ translation initiation factor  note EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1 (EIF4A1); FUNCTIONS IN: translation initiation factor activity, ATP-dependent helicase activity; INVOLVED IN: response to cadmium ion, translational initiation; LOCATED IN: cytosol, nucleolus, cell wall, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: EIF4A-2; ATP-dependent helicase/ translation initiation factor (TAIR:AT1G54270.1); Has 31947 Blast hits to 31536 proteins in 1786 species: Archae - 474; Bacteria - 14431; Metazoa - 5037; Fungi - 3351; Plants - 1394; Viruses - 16; Other Eukaryotes - 7244 (source: NCBI BLink).  protein_id AT3G13920.1p  transcript_id AT3G13920.1  protein_id AT3G13920.1p  transcript_id AT3G13920.1  
At3g13920	chr3:004594061	0.0	C/4594061-4594128,4593873-4593976,4593352-4593782,4592705-4593270,4592586-4592664	AT3G13920.2  CDS  gene_syn EIF4A1, EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1, RH4, TIF4A1  gene EIF4A1  function eukaryotic translation initiation factor 4A-1  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytosol|GO:0005829|18433157|IDA  go_process translational initiation|GO:0006413|1398145|ISS  go_function translation initiation factor activity|GO:0003743||ISS  go_function ATP-dependent helicase activity|GO:0008026||ISS  product EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1); ATP-dependent helicase/ translation initiation factor  note EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1 (EIF4A1); FUNCTIONS IN: translation initiation factor activity, ATP-dependent helicase activity; INVOLVED IN: response to cadmium ion, translational initiation; LOCATED IN: cytosol, nucleolus, cell wall, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: EIF4A-2; ATP-dependent helicase/ translation initiation factor (TAIR:AT1G54270.1); Has 31564 Blast hits to 31156 proteins in 1779 species: Archae - 468; Bacteria - 14214; Metazoa - 5022; Fungi - 3345; Plants - 1382; Viruses - 16; Other Eukaryotes - 7117 (source: NCBI BLink).  protein_id AT3G13920.2p  transcript_id AT3G13920.2  protein_id AT3G13920.2p  transcript_id AT3G13920.2  
At3g13930	chr3:004596240	0.0	W/4596240-4596272,4596661-4596754,4597024-4597088,4597185-4597270,4597363-4597403,4597585-4597640,4597725-4597799,4597883-4597975,4598158-4598397,4598488-4598560,4598668-4598768,4598897-4598982,4599056-4599131,4599216-4599283,4599371-4599437,4599528-4599623,4599703-4599805,4599894-4599989,4600073-4600143	AT3G13930.1  CDS  go_component mitochondrion|GO:0005739|15276431|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process pyruvate metabolic process|GO:0006090||IEA  go_process metabolic process|GO:0008152||IEA  go_function dihydrolipoyllysine-residue acetyltransferase activity|GO:0004742||IEA  go_function protein binding|GO:0005515||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|14764908|IDA  go_function dihydrolipoyllysine-residue acetyltransferase activity|GO:0004742||ISS  product dihydrolipoamide S-acetyltransferase, putative  note dihydrolipoamide S-acetyltransferase, putative; FUNCTIONS IN: dihydrolipoyllysine-residue acetyltransferase activity, protein binding, acyltransferase activity; INVOLVED IN: pyruvate metabolic process, metabolic process; LOCATED IN: mitochondrion, chloroplast, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), Dihydrolipoamide acetyltransferase, long form (InterPro:IPR006257), E3 binding (InterPro:IPR004167), 2-oxoacid dehydrogenase acyltransferase, catalytic domain (InterPro:IPR001078), Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: dihydrolipoamide S-acetyltransferase, putative (TAIR:AT1G54220.2); Has 15128 Blast hits to 14242 proteins in 1320 species: Archae - 43; Bacteria - 6315; Metazoa - 646; Fungi - 315; Plants - 198; Viruses - 0; Other Eukaryotes - 7611 (source: NCBI BLink).  protein_id AT3G13930.1p  transcript_id AT3G13930.1  protein_id AT3G13930.1p  transcript_id AT3G13930.1  
At3g13940	chr3:004601951	0.0	C/4601951-4602412,4601679-4601816,4601218-4601532,4600647-4601060	AT3G13940.1  CDS  go_component nucleus|GO:0005634||IEA  go_process transcription|GO:0006350||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  product DNA binding / DNA-directed RNA polymerase  note DNA binding / DNA-directed RNA polymerase; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase I associated factor, A49-like (InterPro:IPR009668); Has 150 Blast hits to 150 proteins in 69 species: Archae - 0; Bacteria - 1; Metazoa - 57; Fungi - 66; Plants - 15; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT3G13940.1p  transcript_id AT3G13940.1  protein_id AT3G13940.1p  transcript_id AT3G13940.1  
At3g13950	chr3:004604149	0.0	W/4604149-4604519,4604943-4605195	AT3G13950.1  CDS  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13266.1); Has 197 Blast hits to 141 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 197; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G13950.1p  transcript_id AT3G13950.1  protein_id AT3G13950.1p  transcript_id AT3G13950.1  
At3g13960	chr3:004608526	0.0	W/4608526-4608724,4609004-4609535,4609614-4610068,4610153-4610160	AT3G13960.1  CDS  gene_syn AtGRF5, GROWTH-REGULATING FACTOR 5  gene AtGRF5  function Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flower.  go_component nucleus|GO:0005634|12974814|ISS  go_process leaf development|GO:0048366|12974814|TAS  go_function transcription activator activity|GO:0016563|12974814|ISS  product AtGRF5 (GROWTH-REGULATING FACTOR 5); transcription activator  note GROWTH-REGULATING FACTOR 5 (AtGRF5); FUNCTIONS IN: transcription activator activity; INVOLVED IN: leaf development; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine-Leucine-Glutamine, QLQ (InterPro:IPR014978), WRC (InterPro:IPR014977); BEST Arabidopsis thaliana protein match is: AtGRF6 (GROWTH-REGULATING FACTOR 6); transcription activator (TAIR:AT2G06200.1); Has 2378 Blast hits to 1269 proteins in 135 species: Archae - 0; Bacteria - 85; Metazoa - 852; Fungi - 173; Plants - 357; Viruses - 4; Other Eukaryotes - 907 (source: NCBI BLink).  protein_id AT3G13960.1p  transcript_id AT3G13960.1  protein_id AT3G13960.1p  transcript_id AT3G13960.1  
At3g13965	chr3:004612141	0.0	C/4612141-4612770	AT3G13965.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At3g13970	chr3:004614761	0.0	C/4614761-4614794,4614512-4614570,4614056-4614124,4613906-4613968,4613696-4613755	AT3G13970.1  CDS  gene_syn APG12, APG12B, AUTOPHAGY 12, AUTOPHAGY 12 B  gene APG12B  go_component cytoplasm|GO:0005737||IEA  go_process autophagic vacuole formation|GO:0000045||IEA  go_process autophagy|GO:0006914||ISS  go_function molecular_function|GO:0003674||ND  product APG12B (AUTOPHAGY 12 B)  note AUTOPHAGY 12 B (APG12B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: autophagy, autophagic vacuole formation; LOCATED IN: cytoplasm; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Autophagy protein 12 (InterPro:IPR007242); BEST Arabidopsis thaliana protein match is: ATG12A (AUTOPHAGY 12 A); protein binding (TAIR:AT1G54210.1); Has 228 Blast hits to 228 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 96; Fungi - 96; Plants - 30; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G13970.1p  transcript_id AT3G13970.1  protein_id AT3G13970.1p  transcript_id AT3G13970.1  
At3g13980	chr3:004619189	0.0	C/4619189-4620262	AT3G13980.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54200.1); Has 1723 Blast hits to 368 proteins in 83 species: Archae - 0; Bacteria - 6; Metazoa - 456; Fungi - 56; Plants - 60; Viruses - 6; Other Eukaryotes - 1139 (source: NCBI BLink).  protein_id AT3G13980.1p  transcript_id AT3G13980.1  protein_id AT3G13980.1p  transcript_id AT3G13980.1  
At3g13990	chr3:004630206	0.0	C/4630206-4630383,4629793-4629836,4629247-4629418,4628775-4628907,4627842-4628368,4627301-4627640,4626942-4627203,4626766-4626858,4626138-4626599,4625708-4626040	AT3G13990.2  CDS  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1296 (InterPro:IPR009719); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G07660.1); Has 453 Blast hits to 410 proteins in 86 species: Archae - 0; Bacteria - 6; Metazoa - 194; Fungi - 55; Plants - 120; Viruses - 3; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT3G13990.2p  transcript_id AT3G13990.2  protein_id AT3G13990.2p  transcript_id AT3G13990.2  
At3g13990	chr3:004630206	0.0	C/4630206-4630383,4629793-4629836,4629247-4629418,4628775-4628907,4627842-4628368,4627301-4627640,4626942-4627203,4626766-4626861,4626138-4626599,4625708-4626040	AT3G13990.1  CDS  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1296 (InterPro:IPR009719); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G07660.1); Has 483 Blast hits to 417 proteins in 93 species: Archae - 0; Bacteria - 6; Metazoa - 202; Fungi - 61; Plants - 122; Viruses - 3; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT3G13990.1p  transcript_id AT3G13990.1  protein_id AT3G13990.1p  transcript_id AT3G13990.1  
At3g14000	chr3:004633216	0.0	C/4633216-4633353,4632641-4633020,4631821-4631956,4631332-4631723,4631170-4631248	AT3G14000.1  CDS  gene_syn ATBRXL2, BRX-LIKE2  gene ATBRXL2  function Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ATBRXL2  note ATBRXL2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591); BEST Arabidopsis thaliana protein match is: BRX-LIKE3 (BREVIS RADIX-LIKE 3) (TAIR:AT1G54180.2); Has 454 Blast hits to 267 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 12; Plants - 432; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT3G14000.1p  transcript_id AT3G14000.1  protein_id AT3G14000.1p  transcript_id AT3G14000.1  
At3g14000	chr3:004633216	0.0	C/4633216-4633353,4632641-4633020,4631821-4631956,4631332-4631723,4631170-4631248	AT3G14000.2  CDS  gene_syn ATBRXL2, BRX-LIKE2  gene ATBRXL2  function Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ATBRXL2  note ATBRXL2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591); BEST Arabidopsis thaliana protein match is: BRX-LIKE3 (BREVIS RADIX-LIKE 3) (TAIR:AT1G54180.2); Has 454 Blast hits to 267 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 12; Plants - 432; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT3G14000.2p  transcript_id AT3G14000.2  protein_id AT3G14000.2p  transcript_id AT3G14000.2  
At3g14010	chr3:004637164	0.0	W/4637164-4637260,4637335-4637490,4637588-4637724,4637854-4638044,4638462-4638639,4638723-4638938,4639007-4639107,4639193-4639253,4639367-4639397,4639679-4639926,4640009-4640164,4640241-4640318,4640431-4640535,4640659-4640691	AT3G14010.1  CDS  gene_syn CID4, CTC-Interacting Domain 4  gene CID4  function hydroxyproline-rich glycoprotein family protein, similar to Mrs16p (GI:2737884) (Saccharomyces cerevisiae); weak similarity to ataxin-2 related protein (GI:1679686) (Homo sapiens). Included in a family of CTC interacting domain proteins found to interact with PAB2.  go_function protein binding|GO:0005515|15650869|IPI  product CID4 (CTC-Interacting Domain 4); protein binding  note CTC-Interacting Domain 4 (CID4); FUNCTIONS IN: protein binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LsmAD domain (InterPro:IPR009604); BEST Arabidopsis thaliana protein match is: CID3 (CTC-Interacting Domain 3) (TAIR:AT1G54170.1); Has 12346 Blast hits to 5786 proteins in 527 species: Archae - 9; Bacteria - 1099; Metazoa - 3559; Fungi - 1422; Plants - 539; Viruses - 92; Other Eukaryotes - 5626 (source: NCBI BLink).  protein_id AT3G14010.1p  transcript_id AT3G14010.1  protein_id AT3G14010.1p  transcript_id AT3G14010.1  
At3g14010	chr3:004637164	0.0	W/4637164-4637260,4637335-4637490,4637588-4637724,4637854-4638044,4638462-4638639,4638723-4638938,4639007-4639107,4639193-4639253,4639367-4639397,4639679-4639926,4640009-4640164,4640241-4640318,4640431-4640535,4640659-4640691	AT3G14010.2  CDS  gene_syn CID4, CTC-Interacting Domain 4  gene CID4  function hydroxyproline-rich glycoprotein family protein, similar to Mrs16p (GI:2737884) (Saccharomyces cerevisiae); weak similarity to ataxin-2 related protein (GI:1679686) (Homo sapiens). Included in a family of CTC interacting domain proteins found to interact with PAB2.  go_function protein binding|GO:0005515|15650869|IPI  product CID4 (CTC-Interacting Domain 4); protein binding  note CTC-Interacting Domain 4 (CID4); FUNCTIONS IN: protein binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LsmAD domain (InterPro:IPR009604); BEST Arabidopsis thaliana protein match is: CID3 (CTC-Interacting Domain 3) (TAIR:AT1G54170.1); Has 12346 Blast hits to 5786 proteins in 527 species: Archae - 9; Bacteria - 1099; Metazoa - 3559; Fungi - 1422; Plants - 539; Viruses - 92; Other Eukaryotes - 5626 (source: NCBI BLink).  protein_id AT3G14010.2p  transcript_id AT3G14010.2  protein_id AT3G14010.2p  transcript_id AT3G14010.2  
At3g14010	chr3:004637164	0.0	W/4637164-4637260,4637335-4637490,4637588-4637724,4637854-4638044,4638462-4638639,4638723-4638938,4639007-4639107,4639193-4639253,4639367-4639397,4639679-4639926,4640009-4640164,4640241-4640318,4640431-4640535,4640659-4640691	AT3G14010.3  CDS  gene_syn CID4, CTC-Interacting Domain 4  gene CID4  function hydroxyproline-rich glycoprotein family protein, similar to Mrs16p (GI:2737884) (Saccharomyces cerevisiae); weak similarity to ataxin-2 related protein (GI:1679686) (Homo sapiens). Included in a family of CTC interacting domain proteins found to interact with PAB2.  go_function protein binding|GO:0005515|15650869|IPI  product CID4 (CTC-Interacting Domain 4); protein binding  note CTC-Interacting Domain 4 (CID4); FUNCTIONS IN: protein binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LsmAD domain (InterPro:IPR009604); BEST Arabidopsis thaliana protein match is: CID3 (CTC-Interacting Domain 3) (TAIR:AT1G54170.1); Has 12346 Blast hits to 5786 proteins in 527 species: Archae - 9; Bacteria - 1099; Metazoa - 3559; Fungi - 1422; Plants - 539; Viruses - 92; Other Eukaryotes - 5626 (source: NCBI BLink).  protein_id AT3G14010.3p  transcript_id AT3G14010.3  protein_id AT3G14010.3p  transcript_id AT3G14010.3  
At3g14020	chr3:004642968	0.0	W/4642968-4643244,4643345-4643427,4643539-4643619,4643700-4643870,4643987-4644301	AT3G14020.1  CDS  gene_syn NF-YA6, NUCLEAR FACTOR Y, SUBUNIT A6  gene NF-YA6  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_component CCAAT-binding factor complex|GO:0016602||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component CCAAT-binding factor complex|GO:0016602||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product NF-YA6 (NUCLEAR FACTOR Y, SUBUNIT A6); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT A6 (NF-YA6); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: NF-YA5 (NUCLEAR FACTOR Y, SUBUNIT A5); specific transcriptional repressor/ transcription factor (TAIR:AT1G54160.1); Has 441 Blast hits to 441 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 88; Plants - 214; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT3G14020.1p  transcript_id AT3G14020.1  protein_id AT3G14020.1p  transcript_id AT3G14020.1  
At3g14025	chr3:004644898	0.0	W/4644898-4645705	AT3G14025.1  pseudogenic_transcript  pseudo  function pseudogene of scarecrow transcription factor family protein  
At3g14030	chr3:004646939	0.0	C/4646939-4646971,4646272-4646841	AT3G14030.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G17200.1); Has 350 Blast hits to 337 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 350; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G14030.1p  transcript_id AT3G14030.1  protein_id AT3G14030.1p  transcript_id AT3G14030.1  
At3g14040	chr3:004649963	0.0	C/4649963-4650226,4649559-4649867,4648949-4649464,4648607-4648855	AT3G14040.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase  note exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase (TAIR:AT3G07850.1); Has 2542 Blast hits to 2533 proteins in 368 species: Archae - 2; Bacteria - 437; Metazoa - 8; Fungi - 1139; Plants - 880; Viruses - 4; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT3G14040.1p  transcript_id AT3G14040.1  protein_id AT3G14040.1p  transcript_id AT3G14040.1  
At3g14050	chr3:004652840	0.0	C/4652840-4653514,4652559-4652744,4651967-4652427,4651723-4651881,4651277-4651628,4650902-4651198	AT3G14050.1  CDS  gene_syn AT-RSH2, ATRSH2, RELA-SPOT HOMOLOG 2, RELA/SPOT HOMOLOG 2, RSH2  gene RSH2  go_component chloroplast|GO:0009507|18535838|IDA  go_process response to wounding|GO:0009611|18535838|IEP  go_process response to abscisic acid stimulus|GO:0009737|18535838|IEP  go_function GTP diphosphokinase activity|GO:0008728|18535838|IGI  product RSH2 (RELA-SPOT HOMOLOG 2); GTP diphosphokinase  note RELA-SPOT HOMOLOG 2 (RSH2); FUNCTIONS IN: GTP diphosphokinase activity; INVOLVED IN: response to abscisic acid stimulus, response to wounding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD region, subdomain (InterPro:IPR006674), Metal-dependent phosphohydrolase, HD region (InterPro:IPR003607), RelA/SpoT (InterPro:IPR007685); BEST Arabidopsis thaliana protein match is: RSH3 (RELA/SPOT HOMOLOG 3); GTP diphosphokinase (TAIR:AT1G54130.1); Has 8188 Blast hits to 8061 proteins in 1323 species: Archae - 2; Bacteria - 4464; Metazoa - 186; Fungi - 38; Plants - 129; Viruses - 2; Other Eukaryotes - 3367 (source: NCBI BLink).  protein_id AT3G14050.1p  transcript_id AT3G14050.1  protein_id AT3G14050.1p  transcript_id AT3G14050.1  
At3g14060	chr3:004657174	0.0	C/4657174-4657551	AT3G14060.1  CDS  go_component cell wall|GO:0005618|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, cytoplasm; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54120.1); Has 16 Blast hits to 16 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G14060.1p  transcript_id AT3G14060.1  protein_id AT3G14060.1p  transcript_id AT3G14060.1  
At3g14067	chr3:004658421	0.0	C/4658421-4660754	AT3G14067.1  CDS  gene_syn MAG2.15  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product subtilase family protein  note subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: apoplast, plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: ARA12; serine-type endopeptidase (TAIR:AT5G67360.1); Has 4847 Blast hits to 4214 proteins in 722 species: Archae - 147; Bacteria - 2629; Metazoa - 66; Fungi - 489; Plants - 902; Viruses - 0; Other Eukaryotes - 614 (source: NCBI BLink).  protein_id AT3G14067.1p  transcript_id AT3G14067.1  protein_id AT3G14067.1p  transcript_id AT3G14067.1  
At3g14070	chr3:004661143	0.0	C/4661143-4663074	AT3G14070.1  CDS  gene_syn ATCCX3, CATION CALCIUM EXCHANGER 3, CATION EXCHANGER 9, CAX9, CCX3, MAG2.9  gene CAX9  function Involved in cation (K, Na and Mn) homeostasis and transport  go_component vacuole|GO:0005773|18775974|IDA  go_component vacuolar membrane|GO:0005774|18775974|IDA  go_component endomembrane system|GO:0012505|18775974|IDA  go_component cytoplasmic vesicle membrane|GO:0030659|18775974|IDA  go_process cation transport|GO:0006812||ISS  go_process cellular cation homeostasis|GO:0030003|18775974|IDA  go_process response to cation stress|GO:0043157|18775974|IEP  go_function manganese ion transmembrane transporter activity|GO:0005384|18775974|IMP  go_function cation transmembrane transporter activity|GO:0008324|18775974|IDA  go_function cation transmembrane transporter activity|GO:0008324|18775974|IGI  go_function potassium ion transmembrane transporter activity|GO:0015079|18775974|IMP  go_function sodium ion transmembrane transporter activity|GO:0015081|18775974|IMP  go_function cation:cation antiporter activity|GO:0015491|11500563|NAS  go_function cation:cation antiporter activity|GO:0015491||ISS  product CAX9 (CATION EXCHANGER 9); cation transmembrane transporter/ cation:cation antiporter/ manganese ion transmembrane transporter/ potassium ion transmembrane transporter/ sodium ion transmembrane transporter  note CATION EXCHANGER 9 (CAX9); FUNCTIONS IN: cation transmembrane transporter activity, manganese ion transmembrane transporter activity, cation:cation antiporter activity, sodium ion transmembrane transporter activity, potassium ion transmembrane transporter activity; INVOLVED IN: cellular cation homeostasis, cation transport, response to cation stress; LOCATED IN: cytoplasmic vesicle membrane, endomembrane system, vacuolar membrane, vacuole; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Sodium/calcium exchanger membrane region (InterPro:IPR004837); BEST Arabidopsis thaliana protein match is: CCX4 (CATION CALCIUM EXCHANGER 4); cation:cation antiporter (TAIR:AT1G54115.1); Has 2951 Blast hits to 2462 proteins in 570 species: Archae - 36; Bacteria - 487; Metazoa - 1651; Fungi - 188; Plants - 104; Viruses - 0; Other Eukaryotes - 485 (source: NCBI BLink).  protein_id AT3G14070.1p  transcript_id AT3G14070.1  protein_id AT3G14070.1p  transcript_id AT3G14070.1  
At3g14075	chr3:004666042	0.0	C/4666042-4666338,4665739-4665936,4665383-4665655,4665162-4665264,4664954-4665072,4664669-4664845,4663819-4664580	AT3G14075.1  CDS  go_process lipid metabolic process|GO:0006629||IEA  go_process lipid catabolic process|GO:0016042||IEA  go_function carboxylesterase activity|GO:0004091||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product lipase class 3 family protein  note lipase class 3 family protein; FUNCTIONS IN: triacylglycerol lipase activity, carboxylesterase activity; INVOLVED IN: lipid catabolic process, lipid metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921), Mono- and diacylglycerol lipase, N-terminal (InterPro:IPR005592); BEST Arabidopsis thaliana protein match is: lipase class 3 family protein (TAIR:AT4G16070.1); Has 687 Blast hits to 620 proteins in 137 species: Archae - 3; Bacteria - 35; Metazoa - 217; Fungi - 109; Plants - 144; Viruses - 28; Other Eukaryotes - 151 (source: NCBI BLink).  protein_id AT3G14075.1p  transcript_id AT3G14075.1  protein_id AT3G14075.1p  transcript_id AT3G14075.1  
At3g14080	chr3:004667717	0.0	W/4667717-4667777,4668381-4668449,4668541-4668656,4668742-4668804,4668912-4668989	AT3G14080.1  CDS  go_component nucleus|GO:0005634||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_function molecular_function|GO:0003674||ND  product small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative  note small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative; FUNCTIONS IN: molecular_function unknown; LOCATED IN: small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative (TAIR:AT1G19120.1); Has 774 Blast hits to 773 proteins in 160 species: Archae - 46; Bacteria - 0; Metazoa - 325; Fungi - 215; Plants - 116; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT3G14080.1p  transcript_id AT3G14080.1  protein_id AT3G14080.1p  transcript_id AT3G14080.1  
At3g14080	chr3:004667717	0.0	W/4667717-4667777,4668381-4668449,4668541-4668656,4668742-4668804,4668912-4668989	AT3G14080.2  CDS  go_component nucleus|GO:0005634||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_function molecular_function|GO:0003674||ND  product small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative  note small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative; FUNCTIONS IN: molecular_function unknown; LOCATED IN: small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative (TAIR:AT1G19120.1); Has 774 Blast hits to 773 proteins in 160 species: Archae - 46; Bacteria - 0; Metazoa - 325; Fungi - 215; Plants - 116; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT3G14080.2p  transcript_id AT3G14080.2  protein_id AT3G14080.2p  transcript_id AT3G14080.2  
At3g14090	chr3:004669508	0.0	C/4669508-4671379	AT3G14090.1  CDS  gene_syn ATEXO70D3, MAG2.5, exocyst subunit EXO70 family protein D3  gene ATEXO70D3  function A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.  go_component exocyst|GO:0000145||IEA  go_process exocytosis|GO:0006887||IEA  go_component exocyst|GO:0000145||ISS  go_process vesicle docking during exocytosis|GO:0006904||ISS  go_function protein binding|GO:0005515||ISS  product ATEXO70D3 (exocyst subunit EXO70 family protein D3); protein binding  note exocyst subunit EXO70 family protein D3 (ATEXO70D3); FUNCTIONS IN: protein binding; INVOLVED IN: exocytosis, vesicle docking during exocytosis; LOCATED IN: exocyst; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: ATEXO70D2 (exocyst subunit EXO70 family protein D2); protein binding (TAIR:AT1G54090.1); Has 568 Blast hits to 566 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 68; Plants - 373; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT3G14090.1p  transcript_id AT3G14090.1  protein_id AT3G14090.1p  transcript_id AT3G14090.1  
At3g14100	chr3:004673027	0.0	W/4673027-4673146,4673524-4673585,4673674-4673776,4673965-4674041,4674128-4674189,4674273-4674360,4674458-4674533,4674630-4674660,4674901-4675020,4675162-4675247,4675374-4675550,4675669-4675950	AT3G14100.1  CDS  go_function mRNA 3 -UTR binding|GO:0003730|10747031|ISS  product oligouridylate-binding protein, putative  note oligouridylate-binding protein, putative; FUNCTIONS IN: mRNA 3 -UTR binding; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: oligouridylate-binding protein, putative (TAIR:AT1G54080.1); Has 21621 Blast hits to 14687 proteins in 586 species: Archae - 0; Bacteria - 979; Metazoa - 12825; Fungi - 2452; Plants - 3119; Viruses - 0; Other Eukaryotes - 2246 (source: NCBI BLink).  protein_id AT3G14100.1p  transcript_id AT3G14100.1  protein_id AT3G14100.1p  transcript_id AT3G14100.1  
At3g14110	chr3:004676836	0.0	C/4676836-4677010,4676222-4676745	AT3G14110.2  CDS  gene_syn FLU, FLUORESCENT IN BLUE LIGHT  gene FLU  function Encodes a novel coiled-coil, TPR domain containing protein that is localized to the chloroplast membrane and is involved in chlorophyll biosynthesis. Mutants accumulate protochlorophyllide, an intermediate in the chlorophyll biosynthesis pathway, in dark and release singlet oxygen in plastids in a controlled and non-invasive manner upon a dark/light shift.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function binding|GO:0005488||IEA  go_component chloroplast envelope|GO:0009941|11606728|IDA  go_process response to singlet oxygen|GO:0000304|17540731|IGI  go_process chlorophyll biosynthetic process|GO:0015995|11606728|IMP  go_process oxylipin biosynthetic process|GO:0031408|18182022|IMP  product FLU (FLUORESCENT IN BLUE LIGHT); binding  note FLUORESCENT IN BLUE LIGHT (FLU); FUNCTIONS IN: binding; INVOLVED IN: chlorophyll biosynthetic process, oxylipin biosynthetic process, response to singlet oxygen; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); Has 751 Blast hits to 416 proteins in 91 species: Archae - 8; Bacteria - 239; Metazoa - 417; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT3G14110.2p  transcript_id AT3G14110.2  protein_id AT3G14110.2p  transcript_id AT3G14110.2  
At3g14110	chr3:004677518	0.0	C/4677518-4677602,4677133-4677308,4676836-4677001,4676222-4676745	AT3G14110.1  CDS  gene_syn FLU, FLUORESCENT IN BLUE LIGHT  gene FLU  function Encodes a novel coiled-coil, TPR domain containing protein that is localized to the chloroplast membrane and is involved in chlorophyll biosynthesis. Mutants accumulate protochlorophyllide, an intermediate in the chlorophyll biosynthesis pathway, in dark and release singlet oxygen in plastids in a controlled and non-invasive manner upon a dark/light shift.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function binding|GO:0005488||IEA  go_component chloroplast envelope|GO:0009941|11606728|IDA  go_process response to singlet oxygen|GO:0000304|17540731|IGI  go_process chlorophyll biosynthetic process|GO:0015995|11606728|IMP  go_process oxylipin biosynthetic process|GO:0031408|18182022|IMP  product FLU (FLUORESCENT IN BLUE LIGHT); binding  note FLUORESCENT IN BLUE LIGHT (FLU); FUNCTIONS IN: binding; INVOLVED IN: chlorophyll biosynthetic process, oxylipin biosynthetic process, response to singlet oxygen; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); Has 751 Blast hits to 416 proteins in 91 species: Archae - 8; Bacteria - 239; Metazoa - 417; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT3G14110.1p  transcript_id AT3G14110.1  protein_id AT3G14110.1p  transcript_id AT3G14110.1  
At3g14120	chr3:004677993	0.0	W/4677993-4678072,4678315-4678670,4678897-4678966,4679048-4679163,4679356-4679387,4679480-4679605,4680087-4680245,4680635-4680727,4680819-4680986,4681086-4681184,4681583-4681809,4681894-4681951,4682035-4682123,4682384-4682515,4682645-4682767,4682882-4682980,4683084-4683272,4683514-4683685,4683779-4683929,4684043-4684245,4684418-4684559,4684717-4684877,4685065-4685181,4685384-4685455	AT3G14120.2  CDS  go_component nuclear pore|GO:0005643||IEA  go_process transport|GO:0006810||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; LOCATED IN: nuclear pore; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear pore protein 84/107 (InterPro:IPR007252); Has 207 Blast hits to 206 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 57; Plants - 22; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G14120.2p  transcript_id AT3G14120.2  protein_id AT3G14120.2p  transcript_id AT3G14120.2  
At3g14120	chr3:004677993	0.0	W/4677993-4678072,4678315-4678670,4678897-4678966,4679048-4679163,4679356-4679387,4679480-4679605,4680087-4680245,4680635-4680727,4680819-4680986,4681086-4681184,4681583-4681809,4681894-4681951,4682035-4682123,4682384-4682515,4682645-4682767,4682882-4682980,4683084-4683272,4683514-4683685,4683779-4683929,4684043-4684245,4684418-4684631,4684717-4684877,4685065-4685181,4685384-4685455	AT3G14120.1  CDS  go_component nuclear pore|GO:0005643||IEA  go_process transport|GO:0006810||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; LOCATED IN: nuclear pore; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear pore protein 84/107 (InterPro:IPR007252); Has 207 Blast hits to 206 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 57; Plants - 22; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G14120.1p  transcript_id AT3G14120.1  protein_id AT3G14120.1p  transcript_id AT3G14120.1  
At3g14130	chr3:004687713	0.0	C/4687713-4687852,4687505-4687629,4687365-4687411,4687204-4687281,4686969-4687093,4686801-4686858,4686663-4686725,4686493-4686562,4686290-4686390,4686109-4686213,4685844-4686023	AT3G14130.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function FMN binding|GO:0010181||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function glycolate oxidase activity|GO:0008891||ISS  product (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative  note (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative; FUNCTIONS IN: glycolate oxidase activity, electron carrier activity, oxidoreductase activity, FMN binding, catalytic activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), FMN-dependent alpha-hydroxy acid dehydrogenase (InterPro:IPR017934), FMN-dependent alpha-hydroxy acid dehydrogenase, active site (InterPro:IPR008259), FMN-dependent dehydrogenase (InterPro:IPR000262), Alpha-hydroxy acid dehydrogenase, FMN-dependent (InterPro:IPR012133); BEST Arabidopsis thaliana protein match is: (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative (TAIR:AT3G14150.2); Has 9793 Blast hits to 9779 proteins in 1166 species: Archae - 155; Bacteria - 3369; Metazoa - 366; Fungi - 469; Plants - 174; Viruses - 0; Other Eukaryotes - 5260 (source: NCBI BLink).  protein_id AT3G14130.1p  transcript_id AT3G14130.1  protein_id AT3G14130.1p  transcript_id AT3G14130.1  
At3g14140	chr3:004688546	0.0	W/4688546-4688569,4688772-4688896,4688956-4689568,4689663-4690007,4690153-4690404	AT3G14140.1  CDS  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase (TAIR:AT3G14160.1); Has 730 Blast hits to 726 proteins in 342 species: Archae - 0; Bacteria - 506; Metazoa - 77; Fungi - 21; Plants - 44; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT3G14140.1p  transcript_id AT3G14140.1  protein_id AT3G14140.1p  transcript_id AT3G14140.1  
At3g14150	chr3:004692540	0.0	C/4692540-4692679,4692333-4692457,4692201-4692247,4692026-4692103,4691792-4691916,4691624-4691681,4691488-4691550,4691310-4691379,4691118-4691218,4690929-4691033,4690667-4690846	AT3G14150.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function FMN binding|GO:0010181||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function glycolate oxidase activity|GO:0008891||ISS  product (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative  note (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative; FUNCTIONS IN: glycolate oxidase activity, electron carrier activity, oxidoreductase activity, FMN binding, catalytic activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), FMN-dependent alpha-hydroxy acid dehydrogenase (InterPro:IPR017934), FMN-dependent alpha-hydroxy acid dehydrogenase, active site (InterPro:IPR008259), FMN-dependent dehydrogenase (InterPro:IPR000262), Alpha-hydroxy acid dehydrogenase, FMN-dependent (InterPro:IPR012133); BEST Arabidopsis thaliana protein match is: (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative (TAIR:AT3G14130.1); Has 10273 Blast hits to 10261 proteins in 1264 species: Archae - 169; Bacteria - 3686; Metazoa - 393; Fungi - 514; Plants - 209; Viruses - 0; Other Eukaryotes - 5302 (source: NCBI BLink).  protein_id AT3G14150.1p  transcript_id AT3G14150.1  protein_id AT3G14150.1p  transcript_id AT3G14150.1  
At3g14150	chr3:004692540	0.0	C/4692540-4692679,4692333-4692457,4692201-4692247,4692026-4692103,4691792-4691916,4691624-4691681,4691488-4691550,4691310-4691379,4691118-4691218,4690929-4691033,4690667-4690846	AT3G14150.2  CDS  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function FMN binding|GO:0010181||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function glycolate oxidase activity|GO:0008891||ISS  product (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative  note (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative; FUNCTIONS IN: glycolate oxidase activity, electron carrier activity, oxidoreductase activity, FMN binding, catalytic activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), FMN-dependent alpha-hydroxy acid dehydrogenase (InterPro:IPR017934), FMN-dependent alpha-hydroxy acid dehydrogenase, active site (InterPro:IPR008259), FMN-dependent dehydrogenase (InterPro:IPR000262), Alpha-hydroxy acid dehydrogenase, FMN-dependent (InterPro:IPR012133); BEST Arabidopsis thaliana protein match is: (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative (TAIR:AT3G14130.1); Has 10273 Blast hits to 10261 proteins in 1264 species: Archae - 169; Bacteria - 3686; Metazoa - 393; Fungi - 514; Plants - 209; Viruses - 0; Other Eukaryotes - 5302 (source: NCBI BLink).  protein_id AT3G14150.2p  transcript_id AT3G14150.2  protein_id AT3G14150.2p  transcript_id AT3G14150.2  
At3g14160	chr3:004693495	0.0	W/4693495-4693575,4693718-4694383,4694501-4694845,4694923-4695198	AT3G14160.1  CDS  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product oxidoreductase  note oxidoreductase; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT3G14140.1); Has 756 Blast hits to 755 proteins in 353 species: Archae - 0; Bacteria - 523; Metazoa - 76; Fungi - 30; Plants - 41; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT3G14160.1p  transcript_id AT3G14160.1  protein_id AT3G14160.1p  transcript_id AT3G14160.1  
At3g14170	chr3:004697573	0.0	C/4697573-4697989,4697248-4697484,4696995-4697162,4696810-4696901,4696115-4696718	AT3G14170.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF936, plant (InterPro:IPR010341); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G08760.1); Has 156 Blast hits to 106 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G14170.1p  transcript_id AT3G14170.1  protein_id AT3G14170.1p  transcript_id AT3G14170.1  
At3g14172	chr3:004704715	0.0	C/4704715-4704773,4704451-4704633,4704258-4704357,4704143-4704173,4703998-4704034,4703756-4703908,4701876-4703047,4700683-4701431,4699377-4700586,4699116-4699184,4698860-4698909	AT3G14172.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT1G72410.1); Has 2665 Blast hits to 1956 proteins in 215 species: Archae - 2; Bacteria - 189; Metazoa - 878; Fungi - 141; Plants - 132; Viruses - 5; Other Eukaryotes - 1318 (source: NCBI BLink).  protein_id AT3G14172.1p  transcript_id AT3G14172.1  protein_id AT3G14172.1p  transcript_id AT3G14172.1  
At3g14180	chr3:004707290	0.0	C/4707290-4708621	AT3G14180.1  CDS  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: ASIL1 (ARABIDOPSIS 6B-INTERACTING PROTEIN 1-LIKE 1); sequence-specific DNA binding / transcription factor (TAIR:AT1G54060.1); Has 259 Blast hits to 224 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 4; Plants - 220; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT3G14180.1p  transcript_id AT3G14180.1  protein_id AT3G14180.1p  transcript_id AT3G14180.1  
At3g14185	chr3:004709272	0.0	C/4709272-4709814	AT3G14185.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G14185.1  
At3g14190	chr3:004710907	0.0	W/4710907-4710973,4711058-4711333,4711420-4711463,4711596-4711790	AT3G14190.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12360.1); Has 10 Blast hits to 10 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G14190.1p  transcript_id AT3G14190.1  protein_id AT3G14190.1p  transcript_id AT3G14190.1  
At3g14200	chr3:004714251	0.0	C/4714251-4714361,4713896-4713980,4713674-4713747,4713426-4713482,4713105-4713341,4712881-4713009	AT3G14200.1  CDS  go_function heat shock protein binding|GO:0031072||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: heat shock protein binding (TAIR:AT1G72416.3); Has 15240 Blast hits to 15235 proteins in 1880 species: Archae - 101; Bacteria - 5011; Metazoa - 3112; Fungi - 1305; Plants - 1124; Viruses - 13; Other Eukaryotes - 4574 (source: NCBI BLink).  protein_id AT3G14200.1p  transcript_id AT3G14200.1  protein_id AT3G14200.1p  transcript_id AT3G14200.1  
At3g14205	chr3:004720438	0.0	C/4720438-4720524,4720142-4720346,4719896-4720061,4719071-4719293,4718708-4718784,4718416-4718603,4718224-4718321,4718001-4718134,4717775-4717909,4717308-4717665,4717093-4717214,4716899-4717012,4716625-4716801,4716375-4716533,4716176-4716272,4716008-4716094	AT3G14205.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|GO:0004439||ISS  product phosphoinositide phosphatase family protein  note phosphoinositide phosphatase family protein; FUNCTIONS IN: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Synaptojanin, N-terminal (InterPro:IPR002013); BEST Arabidopsis thaliana protein match is: phosphoinositide phosphatase family protein (TAIR:AT5G20840.1); Has 1513 Blast hits to 1168 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 683; Fungi - 421; Plants - 141; Viruses - 0; Other Eukaryotes - 268 (source: NCBI BLink).  protein_id AT3G14205.1p  transcript_id AT3G14205.1  protein_id AT3G14205.1p  transcript_id AT3G14205.1  
At3g14210	chr3:004729886	0.0	W/4729886-4730147,4730263-4730384,4730579-4730779,4730863-4731130,4731237-4731562	AT3G14210.1  CDS  gene_syn ESM1, epithiospecifier modifier 1  gene ESM1  function A semidominant QTL which has an epistatic effect on the Epithiospecifier gene. Represses nitrile formation and favors isothiocyanate production during glucosinolate hydrolysis. The functional allele deters the insect herbivory T. ni.  go_component nucleus|GO:0005634|14617066|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_process response to cold|GO:0009409|14617066|IEP  go_process response to insect|GO:0009625|16679459|IMP  go_process glucosinolate catabolic process|GO:0019762|16679459|IDA  go_process glucosinolate catabolic process|GO:0019762|16679459|IMP  go_function carboxylesterase activity|GO:0004091||ISS  product ESM1 (epithiospecifier modifier 1); carboxylesterase/ hydrolase, acting on ester bonds  note epithiospecifier modifier 1 (ESM1); FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: glucosinolate catabolic process, response to cold, defense response to bacterium, response to insect; LOCATED IN: in 8 components; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: myrosinase-associated protein, putative (TAIR:AT1G54010.1); Has 1512 Blast hits to 1501 proteins in 69 species: Archae - 0; Bacteria - 44; Metazoa - 1; Fungi - 2; Plants - 1464; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G14210.1p  transcript_id AT3G14210.1  protein_id AT3G14210.1p  transcript_id AT3G14210.1  
At3g14220	chr3:004733039	0.0	W/4733039-4733285,4733354-4733478,4733566-4733766,4733877-4734138,4734227-4734483	AT3G14220.1  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: ESM1 (epithiospecifier modifier 1); carboxylesterase/ hydrolase, acting on ester bonds (TAIR:AT3G14210.1); Has 1563 Blast hits to 1553 proteins in 83 species: Archae - 0; Bacteria - 93; Metazoa - 1; Fungi - 3; Plants - 1460; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G14220.1p  transcript_id AT3G14220.1  protein_id AT3G14220.1p  transcript_id AT3G14220.1  
At3g14225	chr3:004735726	0.0	C/4735726-4735993,4735503-4735642,4735197-4735427,4734616-4735110	AT3G14225.1  CDS  gene_syn GLIP4  gene GLIP4  function Contains lipase signature motif and GDSL domain.  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298|16126835|ISS  product GLIP4; carboxylesterase/ lipase  note GLIP4; FUNCTIONS IN: lipase activity, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: GLIP3; carboxylesterase/ lipase (TAIR:AT1G53990.1); Has 1688 Blast hits to 1669 proteins in 110 species: Archae - 0; Bacteria - 125; Metazoa - 1; Fungi - 25; Plants - 1526; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT3G14225.1p  transcript_id AT3G14225.1  protein_id AT3G14225.1p  transcript_id AT3G14225.1  
At3g14230	chr3:004738700	0.0	C/4738700-4739000,4737616-4738454	AT3G14230.1  CDS  gene_syn RAP2.2  gene RAP2.2  function encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.2). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634|9192694|IC  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677|9192694|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9192694|TAS  product RAP2.2; DNA binding / transcription factor  note RAP2.2; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: RAP2.12; DNA binding / transcription factor (TAIR:AT1G53910.2); Has 4029 Blast hits to 3775 proteins in 202 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 3993; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT3G14230.1p  transcript_id AT3G14230.1  protein_id AT3G14230.1p  transcript_id AT3G14230.1  
At3g14230	chr3:004738712	0.0	C/4738712-4739000,4737616-4738451	AT3G14230.3  CDS  gene_syn RAP2.2  gene RAP2.2  function encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.2). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634|9192694|IC  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677|9192694|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9192694|TAS  product RAP2.2; DNA binding / transcription factor  note RAP2.2; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: RAP2.12; DNA binding / transcription factor (TAIR:AT1G53910.2); Has 4030 Blast hits to 3779 proteins in 202 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 3994; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT3G14230.3p  transcript_id AT3G14230.3  protein_id AT3G14230.3p  transcript_id AT3G14230.3  
At3g14230	chr3:004738712	0.0	C/4738712-4739000,4737616-4738454	AT3G14230.2  CDS  gene_syn RAP2.2  gene RAP2.2  function encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.2). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634|9192694|IC  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677|9192694|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9192694|TAS  product RAP2.2; DNA binding / transcription factor  note RAP2.2; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: RAP2.12; DNA binding / transcription factor (TAIR:AT1G53910.2); Has 4029 Blast hits to 3780 proteins in 203 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 2; Plants - 3991; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT3G14230.2p  transcript_id AT3G14230.2  protein_id AT3G14230.2p  transcript_id AT3G14230.2  
At3g14240	chr3:004741637	0.0	C/4741637-4743964	AT3G14240.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product subtilase family protein  note subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: SLP2; serine-type peptidase (TAIR:AT4G34980.1); Has 5240 Blast hits to 4507 proteins in 782 species: Archae - 159; Bacteria - 2860; Metazoa - 145; Fungi - 483; Plants - 911; Viruses - 0; Other Eukaryotes - 682 (source: NCBI BLink).  protein_id AT3G14240.1p  transcript_id AT3G14240.1  protein_id AT3G14240.1p  transcript_id AT3G14240.1  
At3g14250	chr3:004746120	0.0	C/4746120-4746958,4745963-4746035	AT3G14250.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G53690.1); Has 2339 Blast hits to 2320 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 1149; Fungi - 407; Plants - 373; Viruses - 1; Other Eukaryotes - 409 (source: NCBI BLink).  protein_id AT3G14250.1p  transcript_id AT3G14250.1  protein_id AT3G14250.1p  transcript_id AT3G14250.1  
At3g14260	chr3:004748465	0.0	C/4748465-4748779,4747986-4748363	AT3G14260.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53890.1); Has 139 Blast hits to 137 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G14260.1p  transcript_id AT3G14260.1  protein_id AT3G14260.1p  transcript_id AT3G14260.1  
At3g14270	chr3:004754624	0.0	W/4754624-4755231,4755480-4756229,4756375-4756528,4756642-4756986,4757085-4757939,4758036-4758367,4758473-4758596,4758677-4758805,4758943-4760427,4760505-4760771,4760859-4761185	AT3G14270.1  CDS  function Encodes a FYVE domain protein containing the following domains: FYVE + Chaperonin + PIP5K.  go_component mitochondrion|GO:0005739|14671022|IDA  go_process signal transduction|GO:0007165|15358268|ISS  go_function zinc ion binding|GO:0008270||ISS  go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308||ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product phosphatidylinositol-4-phosphate 5-kinase family protein  note phosphatidylinositol-4-phosphate 5-kinase family protein; FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphoinositide binding, zinc ion binding; INVOLVED IN: signal transduction; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Zinc finger, FYVE-type (InterPro:IPR000306), Zinc finger, FYVE-related (InterPro:IPR017455), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: 1-phosphatidylinositol-4-phosphate 5-kinase/ ATP binding / phosphatidylinositol phosphate kinase/ protein binding / zinc ion binding (TAIR:AT4G33240.2); Has 6503 Blast hits to 6030 proteins in 337 species: Archae - 344; Bacteria - 10; Metazoa - 3277; Fungi - 1157; Plants - 516; Viruses - 3; Other Eukaryotes - 1196 (source: NCBI BLink).  protein_id AT3G14270.1p  transcript_id AT3G14270.1  protein_id AT3G14270.1p  transcript_id AT3G14270.1  
At3g14280	chr3:004762122	0.0	C/4762122-4762286,4761882-4762006,4761654-4761789	AT3G14280.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; Has 29 Blast hits to 29 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G14280.1p  transcript_id AT3G14280.1  protein_id AT3G14280.1p  transcript_id AT3G14280.1  
At3g14290	chr3:004764364	0.0	W/4764364-4764377,4764510-4764591,4764784-4764864,4765157-4765270,4765365-4765466,4765778-4765836,4765933-4766035,4766130-4766195,4766289-4766381	AT3G14290.1  CDS  gene_syn 20S PROTEASOME SUBUNIT PAE2, PAE2  gene PAE2  function Encodes 20S proteasome subunit PAE2 (PAE2).  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_function endopeptidase activity|GO:0004175||IEA  go_function threonine-type endopeptidase activity|GO:0004298||IEA  go_component proteasome core complex|GO:0005839|9373170|TAS  go_component proteasome core complex|GO:0005839|9611183|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_function peptidase activity|GO:0008233||ISS  product PAE2; endopeptidase/ peptidase/ threonine-type endopeptidase  note PAE2; FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, cytosolic ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome alpha-subunit, conserved site (InterPro:IPR000426), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: PAE1; endopeptidase/ peptidase/ threonine-type endopeptidase (TAIR:AT1G53850.2); Has 5709 Blast hits to 5706 proteins in 396 species: Archae - 510; Bacteria - 87; Metazoa - 2197; Fungi - 1275; Plants - 654; Viruses - 0; Other Eukaryotes - 986 (source: NCBI BLink).  protein_id AT3G14290.1p  transcript_id AT3G14290.1  protein_id AT3G14290.1p  transcript_id AT3G14290.1  
At3g14300	chr3:004767675	0.0	C/4767675-4769898,4766905-4767587	AT3G14300.1  CDS  gene_syn A. THALIANA PECTIN METHYLESTERASE 26, ATPME26, ATPMEPCRC, PECTIN METHYLESTERASE 26, PME26  gene ATPMEPCRC  go_component cell wall|GO:0005618||IEA  go_process cell wall modification|GO:0042545||IEA  go_function pectinesterase activity|GO:0030599|9767082|ISS  product ATPMEPCRC; pectinesterase  note ATPMEPCRC; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: ATPME1; pectinesterase (TAIR:AT1G53840.1); Has 2381 Blast hits to 1490 proteins in 200 species: Archae - 3; Bacteria - 260; Metazoa - 6; Fungi - 143; Plants - 1969; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G14300.1p  transcript_id AT3G14300.1  protein_id AT3G14300.1p  transcript_id AT3G14300.1  
At3g14310	chr3:004774499	0.0	C/4774499-4775095,4773576-4774065,4772214-4772905	AT3G14310.1  CDS  gene_syn ATPME3  gene ATPME3  function encodes a pectin methylesterase, targeted by a cellulose binding protein (CBP) from the parasitic nematode Heterodera schachtii during parasitism.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_component cell wall|GO:0005618|19001564|IDA  go_component cytoplasm|GO:0005737|19001564|IDA  go_process response to nematode|GO:0009624|19001564|IMP  go_function pectinesterase activity|GO:0030599|19001564|IMP  go_function pectinesterase activity|GO:0030599|9767082|ISS  product ATPME3; pectinesterase  note ATPME3; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: response to nematode; LOCATED IN: cell wall, apoplast, plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: ATPME2; pectinesterase (TAIR:AT1G53830.1); Has 1448 Blast hits to 1401 proteins in 193 species: Archae - 0; Bacteria - 261; Metazoa - 1; Fungi - 133; Plants - 1052; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G14310.1p  transcript_id AT3G14310.1  protein_id AT3G14310.1p  transcript_id AT3G14310.1  
At3g14320	chr3:004777731	0.0	C/4777731-4778345	AT3G14320.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G53820.1); Has 6561 Blast hits to 6541 proteins in 230 species: Archae - 0; Bacteria - 2; Metazoa - 2136; Fungi - 517; Plants - 2733; Viruses - 57; Other Eukaryotes - 1116 (source: NCBI BLink).  protein_id AT3G14320.1p  transcript_id AT3G14320.1  protein_id AT3G14320.1p  transcript_id AT3G14320.1  
At3g14330	chr3:004782340	0.0	C/4782340-4782451,4781758-4781847,4779688-4781618	AT3G14330.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G57430.1); Has 13083 Blast hits to 5154 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 59; Fungi - 57; Plants - 12750; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).  protein_id AT3G14330.1p  transcript_id AT3G14330.1  protein_id AT3G14330.1p  transcript_id AT3G14330.1  
At3g14340	chr3:004782846	0.0	W/4782846-4783109	AT3G14340.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G14340.1p  transcript_id AT3G14340.1  protein_id AT3G14340.1p  transcript_id AT3G14340.1  
At3g14350	chr3:004786282	0.0	C/4786282-4786397,4786126-4786197,4785965-4786030,4785809-4785880,4785662-4785730,4785515-4785586,4785338-4785403,4785187-4785249,4784777-4785105,4784396-4784685,4784037-4784308,4783818-4783950,4783584-4783717,4783325-4783481,4783115-4783246	AT3G14350.2  CDS  gene_syn SRF7, STRUBBELIG-RECEPTOR FAMILY 7  gene SRF7  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product SRF7 (STRUBBELIG-RECEPTOR FAMILY 7); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note STRUBBELIG-RECEPTOR FAMILY 7 (SRF7); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: SRF6 (STRUBBELIG-RECEPTOR FAMILY 6); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT1G53730.1); Has 103154 Blast hits to 84473 proteins in 2271 species: Archae - 66; Bacteria - 8125; Metazoa - 38353; Fungi - 5945; Plants - 36180; Viruses - 332; Other Eukaryotes - 14153 (source: NCBI BLink).  protein_id AT3G14350.2p  transcript_id AT3G14350.2  protein_id AT3G14350.2p  transcript_id AT3G14350.2  
At3g14350	chr3:004786906	0.0	C/4786906-4786999,4786282-4786414,4786126-4786197,4785965-4786030,4785809-4785880,4785662-4785730,4785515-4785586,4785338-4785403,4785187-4785249,4784777-4785105,4784396-4784685,4784037-4784308,4783818-4783950,4783584-4783717,4783325-4783481,4783115-4783246	AT3G14350.1  CDS  gene_syn SRF7, STRUBBELIG-RECEPTOR FAMILY 7  gene SRF7  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product SRF7 (STRUBBELIG-RECEPTOR FAMILY 7); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note STRUBBELIG-RECEPTOR FAMILY 7 (SRF7); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: SRF6 (STRUBBELIG-RECEPTOR FAMILY 6); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT1G53730.1); Has 102889 Blast hits to 84493 proteins in 2274 species: Archae - 64; Bacteria - 8129; Metazoa - 38381; Fungi - 5946; Plants - 35886; Viruses - 332; Other Eukaryotes - 14151 (source: NCBI BLink).  protein_id AT3G14350.1p  transcript_id AT3G14350.1  protein_id AT3G14350.1p  transcript_id AT3G14350.1  
At3g14350	chr3:004786906	0.0	C/4786906-4786999,4786282-4786414,4786126-4786197,4785965-4786030,4785809-4785880,4785662-4785730,4785515-4785586,4785338-4785403,4785187-4785249,4784777-4785105,4784396-4784685,4784191-4784308,4784037-4784106,4783818-4783950,4783584-4783717,4783325-4783481,4783115-4783246	AT3G14350.3  CDS  gene_syn SRF7, STRUBBELIG-RECEPTOR FAMILY 7  gene SRF7  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product SRF7 (STRUBBELIG-RECEPTOR FAMILY 7); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note STRUBBELIG-RECEPTOR FAMILY 7 (SRF7); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: SRF6 (STRUBBELIG-RECEPTOR FAMILY 6); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT1G53730.1); Has 88322 Blast hits to 70362 proteins in 1790 species: Archae - 50; Bacteria - 6923; Metazoa - 29876; Fungi - 4859; Plants - 34451; Viruses - 266; Other Eukaryotes - 11897 (source: NCBI BLink).  protein_id AT3G14350.3p  transcript_id AT3G14350.3  protein_id AT3G14350.3p  transcript_id AT3G14350.3  
At3g14360	chr3:004791596	0.0	W/4791596-4791950,4792038-4792285,4792380-4792413,4792518-4793179,4793277-4793534	AT3G14360.1  CDS  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_component cellular_component|GO:0005575||ND  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product lipase class 3 family protein  note lipase class 3 family protein; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: triacylglycerol lipase (TAIR:AT5G42930.1); Has 905 Blast hits to 900 proteins in 176 species: Archae - 0; Bacteria - 185; Metazoa - 54; Fungi - 236; Plants - 212; Viruses - 0; Other Eukaryotes - 218 (source: NCBI BLink).  protein_id AT3G14360.1p  transcript_id AT3G14360.1  protein_id AT3G14360.1p  transcript_id AT3G14360.1  
At3g14362	chr3:004794181	0.0	C/4794181-4794327	AT3G14362.1  CDS  gene_syn DEVIL 19, DVL19, ROTUNDIFOLIA LIKE 10, RTFL10  gene RTFL10  go_component cellular_component|GO:0005575||ND  go_process shoot development|GO:0048367|14871303|ISS  go_function molecular_function|GO:0003674||ND  product RTFL10 (ROTUNDIFOLIA LIKE 10)  note ROTUNDIFOLIA LIKE 10 (RTFL10); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: shoot development; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); BEST Arabidopsis thaliana protein match is: RTFL9 (ROTUNDIFOLIA LIKE 9) (TAIR:AT1G53708.1); Has 64 Blast hits to 64 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G14362.1p  transcript_id AT3G14362.1  protein_id AT3G14362.1p  transcript_id AT3G14362.1  
At3g14370	chr3:004798026	0.0	C/4798026-4799468	AT3G14370.1  CDS  gene_syn WAG2  gene WAG2  function The WAG2 and its homolog, WAG1 each encodes protein-serine/threonine kinase that are nearly 70% identical to PsPK3 protein. All three together with CsPK3 belong to PsPK3-type kinases. At the N-terminus, all four possess a serine/threonine-rich domain. They are closely related to Arabidopsis kinases PINOID. wag1/wag2 double mutants exhibit a pronounced wavy root phenotype when grown vertically on agar plates (while wild-type plants develop wavy roots only on plates inclined to angles less than 90 degrees), indicating an overlapping role for WAG1 and WAG2 as suppressors of root waving. Simultaneous disruption of PID(AT2G34650) and its 3 closest homologs (PID2/AT2G26700, WAG1/AT1G53700, and WAG2/AT3G14370) abolishes the formation of cotyledons.  go_component cellular_component|GO:0005575||ND  go_process gravitropism|GO:0009630|16460509|IMP  go_process auxin polar transport|GO:0009926|16460509|IMP  go_process root development|GO:0048364|16460509|IGI  go_process cotyledon development|GO:0048825|19075219|IGI  go_function protein serine/threonine kinase activity|GO:0004674|16460509|ISS  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product WAG2; kinase/ protein serine/threonine kinase  note WAG2; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity; INVOLVED IN: gravitropism, cotyledon development, root development, auxin polar transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, embryo development stages, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: WAG1 (WAG 1); kinase/ protein serine/threonine kinase (TAIR:AT1G53700.1); Has 76276 Blast hits to 75435 proteins in 1822 species: Archae - 25; Bacteria - 6856; Metazoa - 32847; Fungi - 7755; Plants - 13579; Viruses - 399; Other Eukaryotes - 14815 (source: NCBI BLink).  protein_id AT3G14370.1p  transcript_id AT3G14370.1  protein_id AT3G14370.1p  transcript_id AT3G14370.1  
At3g14380	chr3:004803612	0.0	C/4803612-4803799,4803175-4803523	AT3G14380.1  CDS  go_component membrane|GO:0016020|11152613|ISS  product integral membrane family protein  note integral membrane family protein; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT1G17200.1); Has 285 Blast hits to 285 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 285; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G14380.1p  transcript_id AT3G14380.1  protein_id AT3G14380.1p  transcript_id AT3G14380.1  
At3g14385	chr3:004805684	0.0	C/4805684-4805850	AT3G14385.1  miRNA  gene_syn MICRORNA169F, MIR169F  gene MIR169F  function Encodes a microRNA that targets several HAP2 family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGAGCCAAGGAUGACUUGCCG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR169F (MICRORNA169F); miRNA  transcript_id AT3G14385.1  
At3g14390	chr3:004806771	0.0	W/4806771-4807258,4807395-4807569,4807666-4807815,4807963-4808124,4808206-4808391,4808489-4808611,4808686-4808775,4808874-4808954	AT3G14390.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process lysine biosynthetic process via diaminopimelate|GO:0009089||IEA  go_process lysine biosynthetic process via diaminopimelate|GO:0009089||ISS  go_function diaminopimelate decarboxylase activity|GO:0008836|15652176|IGI  go_function diaminopimelate decarboxylase activity|GO:0008836||ISS  product diaminopimelate decarboxylase, putative / DAP carboxylase, putative  note diaminopimelate decarboxylase, putative / DAP carboxylase, putative; FUNCTIONS IN: diaminopimelate decarboxylase activity; INVOLVED IN: lysine biosynthetic process via diaminopimelate; LOCATED IN: chloroplast; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Diaminopimelate decarboxylase (InterPro:IPR002986), Alanine racemase/group IV decarboxylase, C-terminal (InterPro:IPR009006), Orn/DAP/Arg decarboxylase 2 (InterPro:IPR000183); BEST Arabidopsis thaliana protein match is: diaminopimelate decarboxylase, putative / DAP carboxylase, putative (TAIR:AT5G11880.1); Has 9248 Blast hits to 9226 proteins in 1454 species: Archae - 98; Bacteria - 4313; Metazoa - 392; Fungi - 133; Plants - 315; Viruses - 27; Other Eukaryotes - 3970 (source: NCBI BLink).  protein_id AT3G14390.1p  transcript_id AT3G14390.1  protein_id AT3G14390.1p  transcript_id AT3G14390.1  
At3g14395	chr3:004811044	0.0	W/4811044-4811271	AT3G14395.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G14395.1p  transcript_id AT3G14395.1  protein_id AT3G14395.1p  transcript_id AT3G14395.1  
At3g14400	chr3:004815030	0.0	C/4815030-4815210,4814395-4814857,4814239-4814314,4814073-4814165,4813386-4813472,4812459-4813306,4812241-4812366,4811953-4812064	AT3G14400.1  CDS  gene_syn UBIQUITIN-SPECIFIC PROTEASE 25, UBP25  gene UBP25  function Encodes a ubiquitin-specific protease.  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_function ubiquitin-specific protease activity|GO:0004843||ISS  product UBP25 (UBIQUITIN-SPECIFIC PROTEASE 25); ubiquitin thiolesterase/ ubiquitin-specific protease  note UBIQUITIN-SPECIFIC PROTEASE 25 (UBP25); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: UBP23 (UBIQUITIN-SPECIFIC PROTEASE 23); ubiquitin thiolesterase/ ubiquitin-specific protease (TAIR:AT5G57990.1); Has 6767 Blast hits to 5676 proteins in 187 species: Archae - 0; Bacteria - 8; Metazoa - 3780; Fungi - 946; Plants - 568; Viruses - 9; Other Eukaryotes - 1456 (source: NCBI BLink).  protein_id AT3G14400.1p  transcript_id AT3G14400.1  protein_id AT3G14400.1p  transcript_id AT3G14400.1  
At3g14410	chr3:004817751	0.0	C/4817751-4817852,4817280-4817387,4817148-4817182,4816916-4817028,4816558-4816819,4816199-4816467,4815982-4816115	AT3G14410.1  CDS  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_function organic anion transmembrane transporter activity|GO:0008514||ISS  product transporter-related  note transporter-related; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: cytosolic ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: organic anion transmembrane transporter (TAIR:AT1G53660.1); Has 1496 Blast hits to 1495 proteins in 199 species: Archae - 4; Bacteria - 38; Metazoa - 438; Fungi - 259; Plants - 598; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT3G14410.1p  transcript_id AT3G14410.1  protein_id AT3G14410.1p  transcript_id AT3G14410.1  
At3g14415	chr3:004818667	0.0	W/4818667-4818803,4818903-4819027,4819139-4819185,4819304-4819381,4819459-4819583,4819688-4819754,4819885-4819947,4820033-4820102,4820191-4820291,4820379-4820483,4820563-4820748	AT3G14415.1  CDS  go_component nucleus|GO:0005634|14617066|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function FMN binding|GO:0010181||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function glycolate oxidase activity|GO:0008891||ISS  product (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative  note (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative; FUNCTIONS IN: glycolate oxidase activity, electron carrier activity, oxidoreductase activity, FMN binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: in 6 components; EXPRESSED IN: cotyledon, fruit, guard cell, juvenile leaf, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), FMN-dependent alpha-hydroxy acid dehydrogenase (InterPro:IPR017934), FMN-dependent alpha-hydroxy acid dehydrogenase, active site (InterPro:IPR008259), FMN-dependent dehydrogenase (InterPro:IPR000262), Alpha-hydroxy acid dehydrogenase, FMN-dependent (InterPro:IPR012133); BEST Arabidopsis thaliana protein match is: (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative (TAIR:AT3G14420.2); Has 8872 Blast hits to 8856 proteins in 1094 species: Archae - 112; Bacteria - 3084; Metazoa - 295; Fungi - 423; Plants - 161; Viruses - 0; Other Eukaryotes - 4797 (source: NCBI BLink).  protein_id AT3G14415.1p  transcript_id AT3G14415.1  protein_id AT3G14415.1p  transcript_id AT3G14415.1  
At3g14420	chr3:004821804	0.0	W/4821804-4821940,4822033-4822157,4822263-4822309,4822456-4822533,4822615-4822739,4822829-4822895,4823024-4823086,4823178-4823247,4823337-4823437,4823526-4823630,4823714-4823899	AT3G14420.1  CDS  go_component nucleus|GO:0005634|14617066|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process metabolic process|GO:0008152||IEA  go_function glycolate oxidase activity|GO:0008891|18685041|IMP  go_function glycolate oxidase activity|GO:0008891||ISS  product (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative  note (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative; FUNCTIONS IN: glycolate oxidase activity; INVOLVED IN: metabolic process; LOCATED IN: in 7 components; EXPRESSED IN: cotyledon, fruit, guard cell, juvenile leaf, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), FMN-dependent alpha-hydroxy acid dehydrogenase (InterPro:IPR017934), FMN-dependent alpha-hydroxy acid dehydrogenase, active site (InterPro:IPR008259), FMN-dependent dehydrogenase (InterPro:IPR000262), Alpha-hydroxy acid dehydrogenase, FMN-dependent (InterPro:IPR012133); BEST Arabidopsis thaliana protein match is: (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative (TAIR:AT3G14415.1); Has 8739 Blast hits to 8723 proteins in 1073 species: Archae - 108; Bacteria - 2995; Metazoa - 295; Fungi - 425; Plants - 160; Viruses - 0; Other Eukaryotes - 4756 (source: NCBI BLink).  protein_id AT3G14420.1p  transcript_id AT3G14420.1  protein_id AT3G14420.1p  transcript_id AT3G14420.1  
At3g14420	chr3:004821804	0.0	W/4821804-4821940,4822033-4822157,4822263-4822309,4822456-4822533,4822615-4822739,4822829-4822895,4823024-4823086,4823178-4823247,4823337-4823437,4823526-4823630,4823714-4823899	AT3G14420.2  CDS  go_component nucleus|GO:0005634|14617066|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process metabolic process|GO:0008152||IEA  go_function glycolate oxidase activity|GO:0008891|18685041|IMP  go_function glycolate oxidase activity|GO:0008891||ISS  product (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative  note (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative; FUNCTIONS IN: glycolate oxidase activity; INVOLVED IN: metabolic process; LOCATED IN: in 6 components; EXPRESSED IN: cotyledon, fruit, guard cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), FMN-dependent alpha-hydroxy acid dehydrogenase (InterPro:IPR017934), FMN-dependent alpha-hydroxy acid dehydrogenase, active site (InterPro:IPR008259), FMN-dependent dehydrogenase (InterPro:IPR000262), Alpha-hydroxy acid dehydrogenase, FMN-dependent (InterPro:IPR012133); BEST Arabidopsis thaliana protein match is: (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative (TAIR:AT3G14415.1); Has 8739 Blast hits to 8723 proteins in 1073 species: Archae - 108; Bacteria - 2995; Metazoa - 295; Fungi - 425; Plants - 160; Viruses - 0; Other Eukaryotes - 4756 (source: NCBI BLink).  protein_id AT3G14420.2p  transcript_id AT3G14420.2  protein_id AT3G14420.2p  transcript_id AT3G14420.2  
At3g14420	chr3:004821804	0.0	W/4821804-4821940,4822033-4822157,4822263-4822309,4822456-4822533,4822615-4822739,4822829-4822895,4823024-4823086,4823178-4823251,4823341-4823437,4823526-4823630,4823714-4823899	AT3G14420.3  CDS  go_component nucleus|GO:0005634|14617066|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process metabolic process|GO:0008152||IEA  go_function glycolate oxidase activity|GO:0008891|18685041|IMP  go_function glycolate oxidase activity|GO:0008891||ISS  product (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative  note (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative; FUNCTIONS IN: glycolate oxidase activity; INVOLVED IN: metabolic process; LOCATED IN: in 6 components; EXPRESSED IN: cotyledon, fruit, guard cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), FMN-dependent alpha-hydroxy acid dehydrogenase (InterPro:IPR017934), FMN-dependent alpha-hydroxy acid dehydrogenase, active site (InterPro:IPR008259), FMN-dependent dehydrogenase (InterPro:IPR000262), Alpha-hydroxy acid dehydrogenase, FMN-dependent (InterPro:IPR012133); BEST Arabidopsis thaliana protein match is: (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative (TAIR:AT3G14415.1); Has 8364 Blast hits to 8350 proteins in 1027 species: Archae - 101; Bacteria - 2755; Metazoa - 295; Fungi - 421; Plants - 158; Viruses - 0; Other Eukaryotes - 4634 (source: NCBI BLink).  protein_id AT3G14420.3p  transcript_id AT3G14420.3  protein_id AT3G14420.3p  transcript_id AT3G14420.3  
At3g14420	chr3:004821829	0.0	W/4821829-4821944,4822033-4822157,4822263-4822309,4822456-4822533,4822615-4822739,4822829-4822895,4823024-4823086,4823178-4823247,4823337-4823437,4823526-4823630,4823714-4823899	AT3G14420.5  CDS  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process metabolic process|GO:0008152||IEA  go_function glycolate oxidase activity|GO:0008891|18685041|IMP  go_function glycolate oxidase activity|GO:0008891||ISS  product (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative  note (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative; FUNCTIONS IN: glycolate oxidase activity; INVOLVED IN: metabolic process; LOCATED IN: apoplast, chloroplast, peroxisome, membrane; EXPRESSED IN: cotyledon, guard cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), FMN-dependent alpha-hydroxy acid dehydrogenase (InterPro:IPR017934), FMN-dependent alpha-hydroxy acid dehydrogenase, active site (InterPro:IPR008259), FMN-dependent dehydrogenase (InterPro:IPR000262), Alpha-hydroxy acid dehydrogenase, FMN-dependent (InterPro:IPR012133); BEST Arabidopsis thaliana protein match is: (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative (TAIR:AT3G14415.1); Has 8514 Blast hits to 8504 proteins in 1072 species: Archae - 108; Bacteria - 2989; Metazoa - 295; Fungi - 419; Plants - 160; Viruses - 0; Other Eukaryotes - 4543 (source: NCBI BLink).  protein_id AT3G14420.5p  transcript_id AT3G14420.5  protein_id AT3G14420.5p  transcript_id AT3G14420.5  
At3g14420	chr3:004821861	0.0	W/4821861-4821940,4822033-4822157,4822263-4822309,4822456-4822533,4822615-4822739,4822829-4822895,4823024-4823086,4823178-4823247,4823337-4823437,4823526-4823630,4823714-4823899	AT3G14420.4  CDS  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process metabolic process|GO:0008152||IEA  go_function glycolate oxidase activity|GO:0008891|18685041|IMP  go_function glycolate oxidase activity|GO:0008891||ISS  product (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative  note (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative; FUNCTIONS IN: glycolate oxidase activity; INVOLVED IN: metabolic process; LOCATED IN: cytosolic ribosome, apoplast, chloroplast, peroxisome, membrane; EXPRESSED IN: cotyledon, fruit, guard cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), FMN-dependent alpha-hydroxy acid dehydrogenase (InterPro:IPR017934), FMN-dependent alpha-hydroxy acid dehydrogenase, active site (InterPro:IPR008259), FMN-dependent dehydrogenase (InterPro:IPR000262), Alpha-hydroxy acid dehydrogenase, FMN-dependent (InterPro:IPR012133); BEST Arabidopsis thaliana protein match is: (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative (TAIR:AT3G14415.1); Has 8614 Blast hits to 8602 proteins in 1072 species: Archae - 108; Bacteria - 2992; Metazoa - 295; Fungi - 423; Plants - 160; Viruses - 0; Other Eukaryotes - 4636 (source: NCBI BLink).  protein_id AT3G14420.4p  transcript_id AT3G14420.4  protein_id AT3G14420.4p  transcript_id AT3G14420.4  
At3g14420	chr3:004821899	0.0	W/4821899-4822157,4822263-4822309,4822456-4822533,4822615-4822739,4822829-4822895,4823024-4823086,4823178-4823247,4823337-4823437,4823526-4823630,4823714-4823899	AT3G14420.6  CDS  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process metabolic process|GO:0008152||IEA  go_function glycolate oxidase activity|GO:0008891|18685041|IMP  go_function glycolate oxidase activity|GO:0008891||ISS  product (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative  note (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative; FUNCTIONS IN: glycolate oxidase activity; INVOLVED IN: metabolic process; LOCATED IN: apoplast, chloroplast, peroxisome, membrane; EXPRESSED IN: cotyledon, guard cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), FMN-dependent alpha-hydroxy acid dehydrogenase (InterPro:IPR017934), FMN-dependent alpha-hydroxy acid dehydrogenase, active site (InterPro:IPR008259), FMN-dependent dehydrogenase (InterPro:IPR000262), Alpha-hydroxy acid dehydrogenase, FMN-dependent (InterPro:IPR012133); BEST Arabidopsis thaliana protein match is: (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative (TAIR:AT3G14415.1); Has 8496 Blast hits to 8486 proteins in 1072 species: Archae - 108; Bacteria - 2989; Metazoa - 295; Fungi - 419; Plants - 160; Viruses - 0; Other Eukaryotes - 4525 (source: NCBI BLink).  protein_id AT3G14420.6p  transcript_id AT3G14420.6  protein_id AT3G14420.6p  transcript_id AT3G14420.6  
At3g14430	chr3:004824571	0.0	C/4824571-4824732,4824399-4824467	AT3G14430.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 8 Blast hits to 8 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G14430.1p  transcript_id AT3G14430.1  protein_id AT3G14430.1p  transcript_id AT3G14430.1  
At3g14431	chr3:004825202	0.0	W/4825202-4825357	AT3G14431.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G14431.1p  transcript_id AT3G14431.1  protein_id AT3G14431.1p  transcript_id AT3G14431.1  
At3g14440	chr3:004831678	0.0	C/4831678-4833477	AT3G14440.1  CDS  gene_syn 9-CIS-EPOXYCAROTENOID DIOXYGENASE, ATNCED3, NCED3, NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3, SALT TOLERANT 1, SIS7, STO1, SUGAR INSENSITIVE 7  gene NCED3  function Encodes 9-<i>cis</i>-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. Regulated in response to drought and salinity. Expressed in roots, flowers and seeds. Localized to the chloroplast stroma and thylakoid membrane.  go_component chloroplast thylakoid membrane|GO:0009535|12834401|IDA  go_component chloroplast stroma|GO:0009570|12834401|IDA  go_process response to osmotic stress|GO:0006970|16870153|IMP  go_process response to water deprivation|GO:0009414|11532178|IMP  go_process abscisic acid biosynthetic process|GO:0009688|12834401|ISS  go_process hyperosmotic salinity response|GO:0042538|15466233|IMP  go_function 9-cis-epoxycarotenoid dioxygenase activity|GO:0045549|11532178|IDA  go_function 9-cis-epoxycarotenoid dioxygenase activity|GO:0045549|12834401|ISS  product NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3); 9-cis-epoxycarotenoid dioxygenase  note NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3 (NCED3); FUNCTIONS IN: 9-cis-epoxycarotenoid dioxygenase activity; INVOLVED IN: response to water deprivation, hyperosmotic salinity response, abscisic acid biosynthetic process, response to osmotic stress; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: NCED9 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 9); 9-cis-epoxycarotenoid dioxygenase (TAIR:AT1G78390.1); Has 2198 Blast hits to 2172 proteins in 360 species: Archae - 10; Bacteria - 529; Metazoa - 241; Fungi - 119; Plants - 571; Viruses - 0; Other Eukaryotes - 728 (source: NCBI BLink).  protein_id AT3G14440.1p  transcript_id AT3G14440.1  protein_id AT3G14440.1p  transcript_id AT3G14440.1  
At3g14450	chr3:004849788	0.0	W/4849788-4850132,4850229-4850336,4850424-4850468,4850649-4850721,4850829-4850941,4851047-4851106,4851184-4851300,4851396-4851457,4851541-4851601	AT3G14450.1  CDS  gene_syn CID9, CTC-Interacting Domain 9  gene CID9  function RNA-binding protein, putative, contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (2 copies). Contains PAM PABC binding domain.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  go_function protein binding|GO:0005515|15650869|ISS  product CID9 (CTC-Interacting Domain 9); RNA binding / protein binding  note CTC-Interacting Domain 9 (CID9); FUNCTIONS IN: protein binding, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CID8 (CTC-INTERACTING DOMAIN 8); RNA binding / protein binding (TAIR:AT1G53650.1); Has 2706 Blast hits to 2154 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 1664; Fungi - 309; Plants - 491; Viruses - 0; Other Eukaryotes - 242 (source: NCBI BLink).  protein_id AT3G14450.1p  transcript_id AT3G14450.1  protein_id AT3G14450.1p  transcript_id AT3G14450.1  
At3g14452	chr3:004851696	0.0	W/4851696-4851812	AT3G14452.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G14452.1p  transcript_id AT3G14452.1  protein_id AT3G14452.1p  transcript_id AT3G14452.1  
At3g14460	chr3:004851990	0.0	C/4851990-4856264	AT3G14460.1  CDS  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (NBS-LRR class), putative  note disease resistance protein (NBS-LRR class), putative; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: defense response, apoptosis; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (NBS-LRR class), putative (TAIR:AT3G14470.1); Has 28078 Blast hits to 16279 proteins in 614 species: Archae - 48; Bacteria - 2223; Metazoa - 7304; Fungi - 466; Plants - 16793; Viruses - 2; Other Eukaryotes - 1242 (source: NCBI BLink).  protein_id AT3G14460.1p  transcript_id AT3G14460.1  protein_id AT3G14460.1p  transcript_id AT3G14460.1  
At3g14470	chr3:004857940	0.0	W/4857940-4861104	AT3G14470.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (NBS-LRR class), putative  note disease resistance protein (NBS-LRR class), putative; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (NBS-LRR class), putative (TAIR:AT3G14460.1); Has 18658 Blast hits to 14103 proteins in 511 species: Archae - 38; Bacteria - 1182; Metazoa - 4361; Fungi - 212; Plants - 12333; Viruses - 0; Other Eukaryotes - 532 (source: NCBI BLink).  protein_id AT3G14470.1p  transcript_id AT3G14470.1  protein_id AT3G14470.1p  transcript_id AT3G14470.1  
At3g14475	chr3:004860889	0.0	C/4860889-4861009	AT3G14475.1  snoRNA  gene_syn 60522.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT3G14475.1  
At3g14480	chr3:004862153	0.0	W/4862153-4862680	AT3G14480.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine/proline-rich protein  note glycine/proline-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 19884 Blast hits to 6989 proteins in 628 species: Archae - 14; Bacteria - 4314; Metazoa - 7290; Fungi - 848; Plants - 4804; Viruses - 350; Other Eukaryotes - 2264 (source: NCBI BLink).  protein_id AT3G14480.1p  transcript_id AT3G14480.1  protein_id AT3G14480.1p  transcript_id AT3G14480.1  
At3g14490	chr3:004865704	0.0	C/4865704-4865949,4865325-4865598,4864868-4865252,4864567-4864785,4864347-4864485,4864023-4864268,4863631-4863927	AT3G14490.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process metabolic process|GO:0008152||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function lyase activity|GO:0016829||IEA  product terpene synthase/cyclase family protein  note terpene synthase/cyclase family protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase/cyclase family protein (TAIR:AT3G14520.1); Has 1092 Blast hits to 1078 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1088; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G14490.1p  transcript_id AT3G14490.1  protein_id AT3G14490.1p  transcript_id AT3G14490.1  
At3g14500	chr3:004866406	0.0	W/4866406-4866822	AT3G14500.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G36905.1); similar to hypothetical protein MtrDRAFT_AC139526g2v1 [Medicago truncatula] (GB:ABE80133.1); similar to Ribonuclease H [Medicago truncatula] (GB:ABE81233.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)  
At3g14510	chr3:004868042	0.0	C/4868042-4868305,4867378-4867968	AT3G14510.1  CDS  go_process isoprenoid biosynthetic process|GO:0008299||IEA  go_process isoprenoid biosynthetic process|GO:0008299||ISS  product geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative  note geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative; INVOLVED IN: isoprenoid biosynthetic process; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: GGPS3 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 3); farnesyltranstransferase (TAIR:AT3G14550.1); Has 11713 Blast hits to 11708 proteins in 1683 species: Archae - 213; Bacteria - 4930; Metazoa - 250; Fungi - 337; Plants - 287; Viruses - 6; Other Eukaryotes - 5690 (source: NCBI BLink).  protein_id AT3G14510.1p  transcript_id AT3G14510.1  protein_id AT3G14510.1p  transcript_id AT3G14510.1  
At3g14515	chr3:004869124	0.0	C/4869124-4869815	AT3G14515.1  pseudogenic_transcript  pseudo  gene_syn MOA2.16  note pseudogene, terpene synthase (fragment), similar to C-term of terpene synthase (TS1) GB:CAA72074 (Arabidopsis thaliana); blastp match of 37% identity and 2.4e-15 P-value to GP|15321626|gb|AAK95517.1|AF401234_1|AF401234 cyclase {Nicotiana tabacum}  
At3g14517	chr3:004869841	0.0	C/4869841-4872139	AT3G14517.1  mRNA_TE_gene  pseudo  gene_syn MOA2.17  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 9.0e-38 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At3g14520	chr3:004877989	0.0	C/4877989-4878243,4877627-4877897,4877130-4877514,4876827-4877045,4876593-4876731,4876254-4876502,4875868-4876167	AT3G14520.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function lyase activity|GO:0016829||IEA  product terpene synthase/cyclase family protein  note terpene synthase/cyclase family protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; EXPRESSED IN: embryo, sepal, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase/cyclase family protein (TAIR:AT3G14540.1); Has 1079 Blast hits to 1068 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1076; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G14520.1p  transcript_id AT3G14520.1  protein_id AT3G14520.1p  transcript_id AT3G14520.1  
At3g14530	chr3:004879957	0.0	C/4879957-4880448,4879293-4879883	AT3G14530.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process isoprenoid biosynthetic process|GO:0008299||IEA  go_process isoprenoid biosynthetic process|GO:0008299||ISS  go_function farnesyltranstransferase activity|GO:0004311||ISS  product geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative  note geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative; FUNCTIONS IN: farnesyltranstransferase activity; INVOLVED IN: isoprenoid biosynthetic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: GGPS3 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 3); farnesyltranstransferase (TAIR:AT3G14550.1); Has 11749 Blast hits to 11745 proteins in 1678 species: Archae - 213; Bacteria - 4929; Metazoa - 259; Fungi - 345; Plants - 284; Viruses - 6; Other Eukaryotes - 5713 (source: NCBI BLink).  protein_id AT3G14530.1p  transcript_id AT3G14530.1  protein_id AT3G14530.1p  transcript_id AT3G14530.1  
At3g14540	chr3:004883691	0.0	C/4883691-4883936,4883334-4883604,4882850-4883234,4882556-4882774,4882338-4882476,4882005-4882253,4881614-4881913	AT3G14540.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function lyase activity|GO:0016829||IEA  product terpene synthase/cyclase family protein  note terpene synthase/cyclase family protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase/cyclase family protein (TAIR:AT3G14520.1); Has 1082 Blast hits to 1068 proteins in 140 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1077; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G14540.1p  transcript_id AT3G14540.1  protein_id AT3G14540.1p  transcript_id AT3G14540.1  
At3g14550	chr3:004885454	0.0	C/4885454-4885945,4884754-4885344	AT3G14550.1  CDS  gene_syn GERANYLGERANYL PYROPHOSPHATE SYNTHASE 3, GGPS3  gene GGPS3  function Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots.  go_component chloroplast|GO:0009507|10759500|IDA  go_component etioplast|GO:0009513|10759500|IDA  go_process isoprenoid biosynthetic process|GO:0008299|10759500|TAS  go_process isoprenoid biosynthetic process|GO:0008299||ISS  go_function farnesyltranstransferase activity|GO:0004311|10759500|IDA  product GGPS3 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 3); farnesyltranstransferase  note GERANYLGERANYL PYROPHOSPHATE SYNTHASE 3 (GGPS3); FUNCTIONS IN: farnesyltranstransferase activity; INVOLVED IN: isoprenoid biosynthetic process; LOCATED IN: etioplast, chloroplast; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative (TAIR:AT3G14530.1); Has 11774 Blast hits to 11770 proteins in 1683 species: Archae - 213; Bacteria - 4946; Metazoa - 266; Fungi - 351; Plants - 290; Viruses - 6; Other Eukaryotes - 5702 (source: NCBI BLink).  protein_id AT3G14550.1p  transcript_id AT3G14550.1  protein_id AT3G14550.1p  transcript_id AT3G14550.1  
At3g14560	chr3:004889368	0.0	W/4889368-4889832	AT3G14560.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G14560.1p  transcript_id AT3G14560.1  protein_id AT3G14560.1p  transcript_id AT3G14560.1  
At3g14570	chr3:004892643	0.0	W/4892643-4892895,4893022-4893080,4893202-4893323,4893400-4893487,4893589-4893699,4893837-4893956,4894040-4894132,4894215-4894306,4894393-4894519,4894622-4894759,4894833-4894909,4895002-4895167,4895553-4895684,4895764-4895881,4895956-4896284,4896463-4896515,4896605-4896665,4896767-4896848,4896936-4896985,4897057-4897143,4897243-4897377,4897460-4897587,4897685-4897769,4897851-4898011,4898103-4898226,4898321-4898442,4898544-4898691,4898784-4898935,4899053-4899159,4899241-4899363,4899463-4899531,4899609-4899777,4899873-4899984,4900085-4900204,4900285-4900400,4900508-4900591,4900682-4900794,4900876-4901105,4901182-4902030,4902126-4902311,4902398-4902628	AT3G14570.1  CDS  gene_syn ATGSL04, atgsl4, glucan synthase-like 4, gsl04  gene ATGSL04  function encodes a protein similar to callose synthase  go_component 1,3-beta-glucan synthase complex|GO:0000148||IEA  go_component membrane|GO:0016020||IEA  go_process 1,3-beta-glucan biosynthetic process|GO:0006075||IEA  go_component 1,3-beta-glucan synthase complex|GO:0000148||ISS  go_process 1,3-beta-glucan biosynthetic process|GO:0006075||ISS  go_function 1,3-beta-glucan synthase activity|GO:0003843||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product ATGSL04 (glucan synthase-like 4); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups  note glucan synthase-like 4 (ATGSL04); FUNCTIONS IN: transferase activity, transferring glycosyl groups, 1,3-beta-glucan synthase activity; INVOLVED IN: 1,3-beta-glucan biosynthetic process; LOCATED IN: 1,3-beta-glucan synthase complex, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 48 (InterPro:IPR003440); BEST Arabidopsis thaliana protein match is: ATGSL12 (glucan synthase-like 12); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups (TAIR:AT5G13000.1); Has 835 Blast hits to 585 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 552; Plants - 257; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT3G14570.1p  transcript_id AT3G14570.1  protein_id AT3G14570.1p  transcript_id AT3G14570.1  
At3g14580	chr3:004903012	0.0	W/4903012-4904229	AT3G14580.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, sepal; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G46100.1); Has 16419 Blast hits to 4807 proteins in 153 species: Archae - 2; Bacteria - 2; Metazoa - 276; Fungi - 148; Plants - 15495; Viruses - 0; Other Eukaryotes - 496 (source: NCBI BLink).  protein_id AT3G14580.1p  transcript_id AT3G14580.1  protein_id AT3G14580.1p  transcript_id AT3G14580.1  
At3g14590	chr3:004907450	0.0	C/4907450-4907506,4907142-4907285,4906903-4906998,4906695-4906826,4906455-4906607,4906324-4906365,4906151-4906202,4905928-4906020,4905532-4905839,4904448-4905449	AT3G14590.1  CDS  gene_syn NTMC2T6.2, NTMC2TYPE6.2  gene NTMC2T6.2  go_component chloroplast|GO:0009507|15028209|IDA  product unknown protein  note NTMC2T6.2; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: NTMC2T6.1 (TAIR:AT1G53590.1); Has 3079 Blast hits to 2709 proteins in 189 species: Archae - 0; Bacteria - 2; Metazoa - 1922; Fungi - 332; Plants - 570; Viruses - 0; Other Eukaryotes - 253 (source: NCBI BLink).  protein_id AT3G14590.1p  transcript_id AT3G14590.1  protein_id AT3G14590.1p  transcript_id AT3G14590.1  
At3g14590	chr3:004907625	0.0	C/4907625-4907741,4907450-4907524,4907142-4907285,4906903-4906998,4906695-4906826,4906455-4906607,4906324-4906365,4906151-4906202,4905928-4906020,4905532-4905839,4904448-4905449	AT3G14590.2  CDS  gene_syn NTMC2T6.2, NTMC2TYPE6.2  gene NTMC2T6.2  product unknown protein  note NTMC2T6.2; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: NTMC2T6.1 (TAIR:AT1G53590.1); Has 3086 Blast hits to 2715 proteins in 189 species: Archae - 0; Bacteria - 2; Metazoa - 1924; Fungi - 336; Plants - 571; Viruses - 0; Other Eukaryotes - 253 (source: NCBI BLink).  protein_id AT3G14590.2p  transcript_id AT3G14590.2  protein_id AT3G14590.2p  transcript_id AT3G14590.2  
At3g14595	chr3:004909037	0.0	W/4909037-4909193,4909787-4909856,4909953-4910061,4910164-4910226	AT3G14595.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17080.1); Has 81 Blast hits to 81 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G14595.1p  transcript_id AT3G14595.1  protein_id AT3G14595.1p  transcript_id AT3G14595.1  
At3g14600	chr3:004910773	0.0	W/4910773-4910787,4911233-4911348,4911443-4911506,4911592-4911933	AT3G14600.1  CDS  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L18A (RPL18aC)  note 60S ribosomal protein L18A (RPL18aC); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: N-terminal protein myristoylation, translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18ae (InterPro:IPR002670); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L18A (RPL18aB) (TAIR:AT2G34480.1); Has 544 Blast hits to 543 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 241; Fungi - 102; Plants - 93; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT3G14600.1p  transcript_id AT3G14600.1  protein_id AT3G14600.1p  transcript_id AT3G14600.1  
At3g14610	chr3:004912565	0.0	W/4912565-4912838,4912964-4913181,4913268-4913515,4913590-4913962,4914078-4914503	AT3G14610.1  CDS  gene_syn CYP72A7, CYTOCHROME P450, FAMILY 72, SUBFAMILY A, POLYPEPTIDE 7  gene CYP72A7  function putative cytochrome P450  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_function oxygen binding|GO:0019825||ISS  product CYP72A7; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP72A7; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP72A13; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G14660.1); Has 23446 Blast hits to 23373 proteins in 1219 species: Archae - 42; Bacteria - 2885; Metazoa - 10158; Fungi - 4211; Plants - 4995; Viruses - 3; Other Eukaryotes - 1152 (source: NCBI BLink).  protein_id AT3G14610.1p  transcript_id AT3G14610.1  protein_id AT3G14610.1p  transcript_id AT3G14610.1  
At3g14620	chr3:004914978	0.0	W/4914978-4915266,4915373-4915590,4915672-4915919,4915990-4916353,4916425-4916853	AT3G14620.1  CDS  gene_syn CYP72A8, CYTOCHROME P450, FAMILY 72, SUBFAMILY A, POLYPEPTIDE 8  gene CYP72A8  function putative cytochrome P450  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function oxygen binding|GO:0019825||ISS  product CYP72A8; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP72A8; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: response to cyclopentenone; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP72A13; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G14660.1); Has 23301 Blast hits to 23227 proteins in 1178 species: Archae - 44; Bacteria - 2573; Metazoa - 10182; Fungi - 4404; Plants - 4914; Viruses - 3; Other Eukaryotes - 1181 (source: NCBI BLink).  protein_id AT3G14620.1p  transcript_id AT3G14620.1  protein_id AT3G14620.1p  transcript_id AT3G14620.1  
At3g14630	chr3:004917498	0.0	W/4917498-4917762,4917854-4918071,4918182-4918429,4918537-4918906,4918984-4919409	AT3G14630.1  CDS  gene_syn CYP72A9, CYTOCHROME P450, FAMILY 72, SUBFAMILY A, POLYPEPTIDE 9  gene CYP72A9  function putative cytochrome P450  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP72A9; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP72A9; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: stem, sepal, stamen, leaf; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973); BEST Arabidopsis thaliana protein match is: CYP72A15; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G14690.1); Has 23804 Blast hits to 23693 proteins in 1242 species: Archae - 40; Bacteria - 3296; Metazoa - 10130; Fungi - 4127; Plants - 4933; Viruses - 3; Other Eukaryotes - 1275 (source: NCBI BLink).  protein_id AT3G14630.1p  transcript_id AT3G14630.1  protein_id AT3G14630.1p  transcript_id AT3G14630.1  
At3g14640	chr3:004919856	0.0	W/4919856-4920132,4920232-4920449,4920537-4920787,4920905-4921277,4921362-4921787	AT3G14640.1  CDS  gene_syn CYP72A10, CYTOCHROME P450, FAMILY 72, SUBFAMILY A, POLYPEPTIDE 10  gene CYP72A10  function putative cytochrome P450  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP72A10; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP72A10; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973); BEST Arabidopsis thaliana protein match is: CYP72A13; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G14660.1); Has 22934 Blast hits to 22850 proteins in 1191 species: Archae - 35; Bacteria - 2843; Metazoa - 10094; Fungi - 3958; Plants - 4898; Viruses - 3; Other Eukaryotes - 1103 (source: NCBI BLink).  protein_id AT3G14640.1p  transcript_id AT3G14640.1  protein_id AT3G14640.1p  transcript_id AT3G14640.1  
At3g14650	chr3:004922206	0.0	W/4922206-4922482,4922583-4922800,4922906-4923153,4923288-4923657,4923740-4924165	AT3G14650.1  CDS  gene_syn CYP72A11, CYTOCHROME P450, FAMILY 72, SUBFAMILY A, POLYPEPTIDE 11  gene CYP72A11  function putative cytochrome P450  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP72A11; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP72A11; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP72A13; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G14660.1); Has 22644 Blast hits to 22541 proteins in 1179 species: Archae - 40; Bacteria - 2708; Metazoa - 10036; Fungi - 3870; Plants - 4875; Viruses - 3; Other Eukaryotes - 1112 (source: NCBI BLink).  protein_id AT3G14650.1p  transcript_id AT3G14650.1  protein_id AT3G14650.1p  transcript_id AT3G14650.1  
At3g14660	chr3:004924960	0.0	W/4924960-4925236,4925339-4925556,4925653-4925900,4926037-4926406,4926486-4926911	AT3G14660.1  CDS  gene_syn CYP72A13, CYTOCHROME P450, FAMILY 72, SUBFAMILY A, POLYPEPTIDE 13  gene CYP72A13  function putative cytochrome P450  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function oxygen binding|GO:0019825||ISS  product CYP72A13; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP72A13; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: response to cyclopentenone; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP72A11; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G14650.1); Has 22799 Blast hits to 22710 proteins in 1187 species: Archae - 40; Bacteria - 2811; Metazoa - 10072; Fungi - 3880; Plants - 4802; Viruses - 3; Other Eukaryotes - 1191 (source: NCBI BLink).  protein_id AT3G14660.1p  transcript_id AT3G14660.1  protein_id AT3G14660.1p  transcript_id AT3G14660.1  
At3g14670	chr3:004927847	0.0	W/4927847-4928311,4928635-4928868	AT3G14670.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 68070 Blast hits to 29084 proteins in 1156 species: Archae - 136; Bacteria - 13431; Metazoa - 26030; Fungi - 6117; Plants - 2521; Viruses - 576; Other Eukaryotes - 19259 (source: NCBI BLink).  protein_id AT3G14670.1p  transcript_id AT3G14670.1  protein_id AT3G14670.1p  transcript_id AT3G14670.1  
At3g14670	chr3:004927847	0.0	W/4927847-4928311,4928638-4928868	AT3G14670.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 13047 Blast hits to 9569 proteins in 613 species: Archae - 27; Bacteria - 763; Metazoa - 5330; Fungi - 1646; Plants - 697; Viruses - 194; Other Eukaryotes - 4390 (source: NCBI BLink).  protein_id AT3G14670.2p  transcript_id AT3G14670.2  protein_id AT3G14670.2p  transcript_id AT3G14670.2  
At3g14680	chr3:004934478	0.0	W/4934478-4934754,4934871-4935088,4935190-4935437,4935574-4935943,4936037-4936462	AT3G14680.1  CDS  gene_syn CYP72A14, CYTOCHROME P450, FAMILY 72, SUBFAMILY A, POLYPEPTIDE 14  gene CYP72A14  function putative cytochrome P450  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP72A14; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP72A14; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP72A15; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G14690.1); Has 22724 Blast hits to 22644 proteins in 1172 species: Archae - 40; Bacteria - 2655; Metazoa - 10092; Fungi - 3935; Plants - 4885; Viruses - 3; Other Eukaryotes - 1114 (source: NCBI BLink).  protein_id AT3G14680.1p  transcript_id AT3G14680.1  protein_id AT3G14680.1p  transcript_id AT3G14680.1  
At3g14690	chr3:004937410	0.0	W/4937410-4937686,4937803-4938020,4938106-4938353,4938443-4938812,4938885-4939310	AT3G14690.1  CDS  gene_syn CYP72A15, CYTOCHROME P450, FAMILY 72, SUBFAMILY A, POLYPEPTIDE 15  gene CYP72A15  function putative cytochrome P450  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function oxygen binding|GO:0019825||ISS  product CYP72A15; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP72A15; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: response to cyclopentenone; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP72A13; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G14660.1); Has 22771 Blast hits to 22678 proteins in 1192 species: Archae - 40; Bacteria - 2804; Metazoa - 10056; Fungi - 3914; Plants - 4838; Viruses - 3; Other Eukaryotes - 1116 (source: NCBI BLink).  protein_id AT3G14690.1p  transcript_id AT3G14690.1  protein_id AT3G14690.1p  transcript_id AT3G14690.1  
At3g14700	chr3:004940708	0.0	W/4940708-4941322	AT3G14700.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SART-1 protein (InterPro:IPR005011); BEST Arabidopsis thaliana protein match is: DOT2 (DEFECTIVELY ORGANIZED TRIBUTARIES 2) (TAIR:AT5G16780.1); Has 217 Blast hits to 217 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 84; Fungi - 65; Plants - 16; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT3G14700.1p  transcript_id AT3G14700.1  protein_id AT3G14700.1p  transcript_id AT3G14700.1  
At3g14710	chr3:004941545	0.0	W/4941545-4942453,4942550-4942690,4942777-4943055	AT3G14710.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, inflorescence meristem, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G26340.1); Has 872 Blast hits to 857 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 872; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G14710.1p  transcript_id AT3G14710.1  protein_id AT3G14710.1p  transcript_id AT3G14710.1  
At3g14720	chr3:004946057	0.0	W/4946057-4946080,4946173-4946581,4946667-4946794,4946896-4946955,4947157-4947306,4947383-4947538,4947693-4947901,4948017-4948118,4948205-4948365,4948509-4948906	AT3G14720.1  CDS  gene_syn ARABIDOPSIS THALIANA MAP KINASE 19, ATMPK19, MAP KINASE 19, MPK19  gene MPK19  function member of MAP Kinase  go_process signal transduction|GO:0007165|12119167|IC  go_function MAP kinase activity|GO:0004707|11544109|ISS  go_function MAP kinase activity|GO:0004707|12119167|ISS  product ATMPK19; MAP kinase  note ATMPK19; FUNCTIONS IN: MAP kinase activity; INVOLVED IN: signal transduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATMPK18; MAP kinase (TAIR:AT1G53510.1); Has 89535 Blast hits to 88486 proteins in 2778 species: Archae - 51; Bacteria - 7777; Metazoa - 38771; Fungi - 8162; Plants - 17287; Viruses - 533; Other Eukaryotes - 16954 (source: NCBI BLink).  protein_id AT3G14720.1p  transcript_id AT3G14720.1  protein_id AT3G14720.1p  transcript_id AT3G14720.1  
At3g14730	chr3:004949385	0.0	C/4949385-4951346	AT3G14730.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G23330.1); Has 14433 Blast hits to 4909 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 48; Plants - 14121; Viruses - 0; Other Eukaryotes - 211 (source: NCBI BLink).  protein_id AT3G14730.1p  transcript_id AT3G14730.1  protein_id AT3G14730.1p  transcript_id AT3G14730.1  
At3g14735	chr3:004951285	0.0	W/4951285-4952077	AT3G14735.1  snRNA  gene_syn 60477.SNRNA00001, U6 SMALL NUCLEOLAR RNA 1, U6-1  gene U6-1  go_component snRNP U6|GO:0005688||TAS  go_process nuclear mRNA splicing, via spliceosome|GO:0000398||TAS  go_function RNA splicing factor activity, transesterification mechanism|GO:0031202||TAS  product U6-1 (U6 SMALL NUCLEOLAR RNA 1); snRNA  note gi|16516|emb|X52527.1|ATSNU61 Arabidopsis thaliana U6-1 snRNA gene  transcript_id AT3G14735.1  
At3g14740	chr3:004952329	0.0	C/4952329-4953306,4952185-4952232	AT3G14740.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product PHD finger family protein  note PHD finger family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: ATX1 (ARABIDOPSIS HOMOLOGUE OF TRITHORAX); histone-lysine N-methyltransferase/ phosphatidylinositol-5-phosphate binding (TAIR:AT2G31650.1); Has 2567 Blast hits to 2481 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 1634; Fungi - 370; Plants - 313; Viruses - 0; Other Eukaryotes - 250 (source: NCBI BLink).  protein_id AT3G14740.1p  transcript_id AT3G14740.1  protein_id AT3G14740.1p  transcript_id AT3G14740.1  
At3g14740	chr3:004952329	0.0	C/4952329-4953306,4952185-4952238	AT3G14740.2  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product PHD finger family protein  note PHD finger family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: ATX1 (ARABIDOPSIS HOMOLOGUE OF TRITHORAX); histone-lysine N-methyltransferase/ phosphatidylinositol-5-phosphate binding (TAIR:AT2G31650.1); Has 2569 Blast hits to 2483 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 1635; Fungi - 370; Plants - 312; Viruses - 0; Other Eukaryotes - 252 (source: NCBI BLink).  protein_id AT3G14740.2p  transcript_id AT3G14740.2  protein_id AT3G14740.2p  transcript_id AT3G14740.2  
At3g14750	chr3:004954754	0.0	C/4954754-4955373,4954506-4954669,4954263-4954348,4953765-4953890	AT3G14750.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67170.1); Has 3322 Blast hits to 2437 proteins in 324 species: Archae - 47; Bacteria - 376; Metazoa - 1403; Fungi - 181; Plants - 273; Viruses - 4; Other Eukaryotes - 1038 (source: NCBI BLink).  protein_id AT3G14750.1p  transcript_id AT3G14750.1  protein_id AT3G14750.1p  transcript_id AT3G14750.1  
At3g14760	chr3:004956440	0.0	W/4956440-4956898,4956998-4957045	AT3G14760.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible; Has 31 Blast hits to 31 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G14760.1p  transcript_id AT3G14760.1  protein_id AT3G14760.1p  transcript_id AT3G14760.1  
At3g14770	chr3:004959142	0.0	C/4959142-4959202,4958749-4958785,4958445-4958661,4958200-4958358,4957997-4958116,4957787-4957903	AT3G14770.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product nodulin MtN3 family protein  note nodulin MtN3 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MtN3 and saliva related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), MtN3 and saliva related transmembrane protein (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: nodulin MtN3 family protein (TAIR:AT1G21460.1); Has 523 Blast hits to 517 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 184; Fungi - 0; Plants - 290; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT3G14770.1p  transcript_id AT3G14770.1  protein_id AT3G14770.1p  transcript_id AT3G14770.1  
At3g14780	chr3:004963225	0.0	C/4963225-4963465,4962984-4963084,4962680-4962801,4962254-4962575,4961897-4962154	AT3G14780.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: ATGSL04 (glucan synthase-like 4); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups (TAIR:AT3G14570.1); Has 209 Blast hits to 205 proteins in 37 species: Archae - 2; Bacteria - 7; Metazoa - 14; Fungi - 6; Plants - 83; Viruses - 2; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT3G14780.1p  transcript_id AT3G14780.1  protein_id AT3G14780.1p  transcript_id AT3G14780.1  
At3g14790	chr3:004964791	0.0	W/4964791-4966341,4966432-4966875	AT3G14790.1  CDS  gene_syn ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 3, ATRHM3, RHAMNOSE BIOSYNTHESIS 3, RHM3  gene RHM3  go_component soluble fraction|GO:0005625|17190829|IDA  go_process nucleotide-sugar metabolic process|GO:0009225||ISS  go_process UDP-rhamnose biosynthetic process|GO:0010253|17190829|IDA  go_function catalytic activity|GO:0003824||ISS  go_function UDP-L-rhamnose synthase activity|GO:0010280|15134748|ISS  go_function UDP-L-rhamnose synthase activity|GO:0010280|17190829|IDA  product RHM3 (RHAMNOSE BIOSYNTHESIS 3); UDP-L-rhamnose synthase/ catalytic  note RHAMNOSE BIOSYNTHESIS 3 (RHM3); FUNCTIONS IN: UDP-L-rhamnose synthase activity, catalytic activity; INVOLVED IN: UDP-rhamnose biosynthetic process, nucleotide-sugar metabolic process; LOCATED IN: soluble fraction; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: MUM4 (MUCILAGE-MODIFIED 4); UDP-4-keto-6-deoxy-glucose-3,5-epimerase/ UDP-4-keto-rhamnose-4-keto-reductase/ UDP-L-rhamnose synthase/ UDP-glucose 4,6-dehydratase/ catalytic (TAIR:AT1G53500.1); Has 38522 Blast hits to 38384 proteins in 1761 species: Archae - 549; Bacteria - 17138; Metazoa - 945; Fungi - 381; Plants - 882; Viruses - 91; Other Eukaryotes - 18536 (source: NCBI BLink).  protein_id AT3G14790.1p  transcript_id AT3G14790.1  protein_id AT3G14790.1p  transcript_id AT3G14790.1  
At3g14800	chr3:004967160	0.0	C/4967160-4970274	AT3G14800.2  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 2.1e-83 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays)  
At3g14810	chr3:004972496	0.0	C/4972496-4974216,4972279-4972402,4971906-4972199,4971616-4971818,4971223-4971526	AT3G14810.1  CDS  gene_syn MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 5, MSL5  gene MSL5  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  product MSL5 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 5)  note MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 5 (MSL5); LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Membrane protein, At2g17000, predicted (InterPro:IPR016688), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: MSL4 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 4) (TAIR:AT1G53470.1); Has 2543 Blast hits to 2539 proteins in 750 species: Archae - 103; Bacteria - 1829; Metazoa - 6; Fungi - 124; Plants - 84; Viruses - 0; Other Eukaryotes - 397 (source: NCBI BLink).  protein_id AT3G14810.1p  transcript_id AT3G14810.1  protein_id AT3G14810.1p  transcript_id AT3G14810.1  
At3g14820	chr3:004978726	0.0	W/4978726-4978789,4978891-4979076,4979162-4979292,4979381-4979605,4979703-4979955,4980045-4980241	AT3G14820.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function lipase activity|GO:0016298||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298||ISS  product carboxylesterase/ hydrolase, acting on ester bonds / lipase  note carboxylesterase/ hydrolase, acting on ester bonds / lipase; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase, putative (TAIR:AT1G59406.1); Has 1756 Blast hits to 1736 proteins in 136 species: Archae - 0; Bacteria - 175; Metazoa - 1; Fungi - 5; Plants - 1558; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT3G14820.1p  transcript_id AT3G14820.1  protein_id AT3G14820.1p  transcript_id AT3G14820.1  
At3g14830	chr3:004983386	0.0	W/4983386-4983955,4984354-4984593,4984691-4984780,4984870-4985019,4985114-4985238,4985321-4985450,4985541-4985666	AT3G14830.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53450.2); Has 41 Blast hits to 40 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G14830.1p  transcript_id AT3G14830.1  protein_id AT3G14830.1p  transcript_id AT3G14830.1  
At3g14830	chr3:004983386	0.0	W/4983386-4983955,4984354-4984593,4984691-4984780,4984870-4985019,4985114-4985238,4985321-4985450,4985541-4985666	AT3G14830.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53450.2); Has 41 Blast hits to 40 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G14830.2p  transcript_id AT3G14830.2  protein_id AT3G14830.2p  transcript_id AT3G14830.2  
At3g14840	chr3:004988271	0.0	W/4988271-4988370,4988463-4988637,4989090-4989161,4989253-4989321,4989422-4989493,4989594-4989665,4989783-4989845,4989942-4990013,4990114-4990185,4990293-4990364,4990456-4990527,4990621-4990692,4990793-4990858,4990952-4991011,4991098-4991139,4991232-4991272,4991381-4991766,4991846-4992041,4992138-4992299,4992401-4992519,4992611-4992821,4992923-4993160,4993248-4993398,4993493-4993891	AT3G14840.2  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function protein binding|GO:0005515||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat family protein / protein kinase family protein  note leucine-rich repeat family protein / protein kinase family protein; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase-related (TAIR:AT1G53420.1); Has 124439 Blast hits to 95007 proteins in 3413 species: Archae - 67; Bacteria - 9885; Metazoa - 43727; Fungi - 7330; Plants - 45507; Viruses - 414; Other Eukaryotes - 17509 (source: NCBI BLink).  protein_id AT3G14840.2p  transcript_id AT3G14840.2  protein_id AT3G14840.2p  transcript_id AT3G14840.2  
At3g14840	chr3:004988271	0.0	W/4988271-4988370,4988463-4988701	AT3G14840.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function protein binding|GO:0005515||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat family protein / protein kinase family protein  note leucine-rich repeat family protein / protein kinase family protein; FUNCTIONS IN: protein binding, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase-related (TAIR:AT1G53420.1); Has 38 Blast hits to 38 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G14840.1p  transcript_id AT3G14840.1  protein_id AT3G14840.1p  transcript_id AT3G14840.1  
At3g14850	chr3:004995615	0.0	W/4995615-4995877,4996546-4996717,4996805-4996980,4997074-4997232,4997311-4997611	AT3G14850.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29050.1); Has 712 Blast hits to 697 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 710; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G14850.2p  transcript_id AT3G14850.2  protein_id AT3G14850.2p  transcript_id AT3G14850.2  
At3g14850	chr3:004996592	0.0	W/4996592-4996717,4996805-4996980,4997074-4997232,4997311-4997611	AT3G14850.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29050.1); Has 676 Blast hits to 671 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 674; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G14850.1p  transcript_id AT3G14850.1  protein_id AT3G14850.1p  transcript_id AT3G14850.1  
At3g14855	chr3:004998141	0.0	W/4998141-4998212	AT3G14855.1  tRNA  gene_syn 60713.TRNA-CYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Cys (anticodon: GCA)  transcript_id AT3G14855.1  
At3g14860	chr3:005000768	0.0	C/5000768-5000894,5000581-5000652,5000311-5000478,4999865-5000035,4999524-4999736,4999321-4999409,4998591-4999229	AT3G14860.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NHL repeat-containing protein  note NHL repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NHL repeat (InterPro:IPR001258), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: NHL repeat-containing protein (TAIR:AT1G70280.2); Has 1588 Blast hits to 697 proteins in 115 species: Archae - 75; Bacteria - 805; Metazoa - 44; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 573 (source: NCBI BLink).  protein_id AT3G14860.1p  transcript_id AT3G14860.1  protein_id AT3G14860.1p  transcript_id AT3G14860.1  
At3g14860	chr3:005000768	0.0	C/5000768-5000894,5000581-5000652,5000311-5000478,4999865-5000035,4999524-4999736,4999321-4999409,4998591-4999232	AT3G14860.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NHL repeat-containing protein  note NHL repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NHL repeat (InterPro:IPR001258), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: NHL repeat-containing protein (TAIR:AT1G70280.2); Has 1587 Blast hits to 698 proteins in 116 species: Archae - 75; Bacteria - 803; Metazoa - 45; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 573 (source: NCBI BLink).  protein_id AT3G14860.2p  transcript_id AT3G14860.2  protein_id AT3G14860.2p  transcript_id AT3G14860.2  
At3g14870	chr3:005004040	0.0	W/5004040-5004042,5004171-5005586	AT3G14870.3  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF641, plant (InterPro:IPR006943); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53380.3); Has 274 Blast hits to 272 proteins in 42 species: Archae - 9; Bacteria - 4; Metazoa - 32; Fungi - 3; Plants - 180; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT3G14870.3p  transcript_id AT3G14870.3  protein_id AT3G14870.3p  transcript_id AT3G14870.3  
At3g14870	chr3:005004159	0.0	W/5004159-5005586	AT3G14870.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF641, plant (InterPro:IPR006943); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53380.3); Has 291 Blast hits to 289 proteins in 49 species: Archae - 9; Bacteria - 4; Metazoa - 46; Fungi - 5; Plants - 180; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT3G14870.1p  transcript_id AT3G14870.1  protein_id AT3G14870.1p  transcript_id AT3G14870.1  
At3g14870	chr3:005004171	0.0	W/5004171-5005586	AT3G14870.2  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF641, plant (InterPro:IPR006943); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53380.3); Has 274 Blast hits to 272 proteins in 42 species: Archae - 9; Bacteria - 4; Metazoa - 32; Fungi - 3; Plants - 180; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT3G14870.2p  transcript_id AT3G14870.2  protein_id AT3G14870.2p  transcript_id AT3G14870.2  
At3g14880	chr3:005006565	0.0	W/5006565-5006971,5007362-5007689	AT3G14880.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: DOG1 (DELAY OF GERMINATION 1) (TAIR:AT5G45830.1); Has 356 Blast hits to 355 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 354; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G14880.1p  transcript_id AT3G14880.1  protein_id AT3G14880.1p  transcript_id AT3G14880.1  
At3g14880	chr3:005006565	0.0	W/5006565-5006971,5007383-5007689	AT3G14880.2  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: DOG1 (DELAY OF GERMINATION 1) (TAIR:AT5G45830.1); Has 368 Blast hits to 367 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 366; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G14880.2p  transcript_id AT3G14880.2  protein_id AT3G14880.2p  transcript_id AT3G14880.2  
At3g14890	chr3:005008751	0.0	W/5008751-5009101,5009208-5009270,5009359-5009640,5009768-5009803,5009942-5010070,5010199-5010492,5010733-5010795,5010940-5011017,5011109-5011177,5011277-5011360,5011499-5011555,5011639-5011715,5011917-5011998,5012089-5012205,5012518-5012651,5012820-5012889,5012992-5013060	AT3G14890.2  CDS  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function catalytic activity|GO:0003824||ISS  product phosphoesterase  note phosphoesterase; FUNCTIONS IN: DNA binding, catalytic activity, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotide kinase 3 phosphatase, central region (InterPro:IPR013954), HAD-superfamily hydrolase, subfamily IIIA (InterPro:IPR006549), Zinc finger, PARP-type (InterPro:IPR001510), Polynucleotide kinase 3, phosphatase (InterPro:IPR015636), DNA 3-phosphatase (InterPro:IPR006551); BEST Arabidopsis thaliana protein match is: PARP2 (POLY(ADP-RIBOSE) POLYMERASE 2); DNA binding / NAD or NADH binding / NAD+ ADP-ribosyltransferase/ zinc ion binding (TAIR:AT2G31320.1); Has 1585 Blast hits to 1095 proteins in 192 species: Archae - 0; Bacteria - 26; Metazoa - 843; Fungi - 127; Plants - 115; Viruses - 44; Other Eukaryotes - 430 (source: NCBI BLink).  protein_id AT3G14890.2p  transcript_id AT3G14890.2  protein_id AT3G14890.2p  transcript_id AT3G14890.2  
At3g14890	chr3:005008751	0.0	W/5008751-5009101,5009208-5009270,5009359-5009640,5009768-5009833,5009942-5010070,5010199-5010492,5010733-5010795,5010940-5011017,5011109-5011177,5011277-5011360,5011499-5011555,5011639-5011715,5011917-5011998,5012089-5012205,5012518-5012651,5012820-5012889,5012992-5013060	AT3G14890.1  CDS  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function catalytic activity|GO:0003824||ISS  product phosphoesterase  note phosphoesterase; FUNCTIONS IN: DNA binding, catalytic activity, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIIA (InterPro:IPR006549), Polynucleotide kinase 3 phosphatase, central region (InterPro:IPR013954), Zinc finger, PARP-type (InterPro:IPR001510), Polynucleotide kinase 3, phosphatase (InterPro:IPR015636), DNA 3-phosphatase (InterPro:IPR006551); BEST Arabidopsis thaliana protein match is: PARP2 (POLY(ADP-RIBOSE) POLYMERASE 2); DNA binding / NAD or NADH binding / NAD+ ADP-ribosyltransferase/ zinc ion binding (TAIR:AT2G31320.1); Has 1759 Blast hits to 1202 proteins in 196 species: Archae - 2; Bacteria - 25; Metazoa - 851; Fungi - 144; Plants - 126; Viruses - 44; Other Eukaryotes - 567 (source: NCBI BLink).  protein_id AT3G14890.1p  transcript_id AT3G14890.1  protein_id AT3G14890.1p  transcript_id AT3G14890.1  
At3g14900	chr3:005013442	0.0	C/5013442-5015277	AT3G14900.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 17241 Blast hits to 9527 proteins in 489 species: Archae - 20; Bacteria - 1435; Metazoa - 6456; Fungi - 2273; Plants - 860; Viruses - 369; Other Eukaryotes - 5828 (source: NCBI BLink).  protein_id AT3G14900.1p  transcript_id AT3G14900.1  protein_id AT3G14900.1p  transcript_id AT3G14900.1  
At3g14910	chr3:005015432	0.0	W/5015432-5015776,5015973-5016107,5016205-5016396,5016509-5016570,5016693-5016853,5016935-5017083,5017162-5017302,5017384-5017566	AT3G14910.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 111 Blast hits to 111 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 89; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT3G14910.1p  transcript_id AT3G14910.1  protein_id AT3G14910.1p  transcript_id AT3G14910.1  
At3g14920	chr3:005018275	0.0	W/5018275-5020104	AT3G14920.1  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05480.1); Has 144 Blast hits to 133 proteins in 54 species: Archae - 12; Bacteria - 7; Metazoa - 0; Fungi - 71; Plants - 51; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G14920.1p  transcript_id AT3G14920.1  protein_id AT3G14920.1p  transcript_id AT3G14920.1  
At3g14930	chr3:005020675	0.0	W/5020675-5020697,5020784-5020935,5021234-5021616,5021700-5021984,5022080-5022315,5022400-5022577	AT3G14930.1  CDS  gene_syn HEME1  gene HEME1  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process porphyrin biosynthetic process|GO:0006779||IEA  go_function uroporphyrinogen decarboxylase activity|GO:0004853||IEA  go_function uroporphyrinogen decarboxylase activity|GO:0004853||ISS  product HEME1; uroporphyrinogen decarboxylase  note HEME1; FUNCTIONS IN: uroporphyrinogen decarboxylase activity; INVOLVED IN: porphyrin biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Uroporphyrinogen decarboxylase HemE (InterPro:IPR006361), Uroporphyrinogen decarboxylase (URO-D) (InterPro:IPR000257); BEST Arabidopsis thaliana protein match is: HEME2; uroporphyrinogen decarboxylase (TAIR:AT2G40490.1); Has 5476 Blast hits to 5476 proteins in 1181 species: Archae - 81; Bacteria - 2274; Metazoa - 206; Fungi - 87; Plants - 67; Viruses - 0; Other Eukaryotes - 2761 (source: NCBI BLink).  protein_id AT3G14930.1p  transcript_id AT3G14930.1  protein_id AT3G14930.1p  transcript_id AT3G14930.1  
At3g14930	chr3:005020675	0.0	W/5020675-5020697,5020784-5020935,5021234-5021616,5021700-5021984,5022080-5022315,5022400-5022577	AT3G14930.2  CDS  gene_syn HEME1  gene HEME1  go_component chloroplast|GO:0009507|18431481|IDA  go_process porphyrin biosynthetic process|GO:0006779||IEA  go_function uroporphyrinogen decarboxylase activity|GO:0004853||IEA  go_function uroporphyrinogen decarboxylase activity|GO:0004853||ISS  product HEME1; uroporphyrinogen decarboxylase  note HEME1; FUNCTIONS IN: uroporphyrinogen decarboxylase activity; INVOLVED IN: porphyrin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Uroporphyrinogen decarboxylase HemE (InterPro:IPR006361), Uroporphyrinogen decarboxylase (URO-D) (InterPro:IPR000257); BEST Arabidopsis thaliana protein match is: HEME2; uroporphyrinogen decarboxylase (TAIR:AT2G40490.1); Has 5476 Blast hits to 5476 proteins in 1181 species: Archae - 81; Bacteria - 2274; Metazoa - 206; Fungi - 87; Plants - 67; Viruses - 0; Other Eukaryotes - 2761 (source: NCBI BLink).  protein_id AT3G14930.2p  transcript_id AT3G14930.2  protein_id AT3G14930.2p  transcript_id AT3G14930.2  
At3g14930	chr3:005021290	0.0	W/5021290-5021616,5021700-5021984,5022080-5022315,5022400-5022577	AT3G14930.3  CDS  gene_syn HEME1  gene HEME1  go_component chloroplast|GO:0009507|18431481|IDA  go_process porphyrin biosynthetic process|GO:0006779||IEA  go_function uroporphyrinogen decarboxylase activity|GO:0004853||IEA  go_function uroporphyrinogen decarboxylase activity|GO:0004853||ISS  product HEME1; uroporphyrinogen decarboxylase  note HEME1; FUNCTIONS IN: uroporphyrinogen decarboxylase activity; INVOLVED IN: porphyrin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Uroporphyrinogen decarboxylase HemE (InterPro:IPR006361), Uroporphyrinogen decarboxylase (URO-D) (InterPro:IPR000257); BEST Arabidopsis thaliana protein match is: HEME2; uroporphyrinogen decarboxylase (TAIR:AT2G40490.1); Has 5412 Blast hits to 5412 proteins in 1181 species: Archae - 81; Bacteria - 2273; Metazoa - 206; Fungi - 87; Plants - 67; Viruses - 0; Other Eukaryotes - 2698 (source: NCBI BLink).  protein_id AT3G14930.3p  transcript_id AT3G14930.3  protein_id AT3G14930.3p  transcript_id AT3G14930.3  
At3g14940	chr3:005025584	0.0	W/5025584-5025751,5025940-5026334,5026421-5026505,5026602-5026824,5026912-5027015,5027099-5027189,5027296-5027450,5027624-5028625,5028709-5029095,5029180-5029476	AT3G14940.1  CDS  gene_syn ATPPC3, PHOSPHOENOLPYRUVATE CARBOXYLASE 3  gene ATPPC3  function One of four genes encoding phosphoenolpyruvate carboxylase, its mRNA is most abundantly expressed in roots and siliques.  go_component cytosol|GO:0005829|18433157|IDA  go_process tricarboxylic acid cycle|GO:0006099||ISS  go_process response to water deprivation|GO:0009414|16283377|IEP  go_process response to salt stress|GO:0009651|16283377|IEP  go_function phosphoenolpyruvate carboxylase activity|GO:0008964|17894783|IDA  go_function phosphoenolpyruvate carboxylase activity|GO:0008964||ISS  product ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3); phosphoenolpyruvate carboxylase  note PHOSPHOENOLPYRUVATE CARBOXYLASE 3 (ATPPC3); FUNCTIONS IN: phosphoenolpyruvate carboxylase activity; INVOLVED IN: response to salt stress, response to water deprivation, tricarboxylic acid cycle; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Phosphoenolpyruvate carboxylase, active site (InterPro:IPR018129), Phosphoenolpyruvate carboxylase (InterPro:IPR001449); BEST Arabidopsis thaliana protein match is: ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1); catalytic/ phosphoenolpyruvate carboxylase (TAIR:AT1G53310.3); Has 5251 Blast hits to 5218 proteins in 1307 species: Archae - 9; Bacteria - 1564; Metazoa - 2; Fungi - 0; Plants - 1272; Viruses - 0; Other Eukaryotes - 2404 (source: NCBI BLink).  protein_id AT3G14940.1p  transcript_id AT3G14940.1  protein_id AT3G14940.1p  transcript_id AT3G14940.1  
At3g14950	chr3:005031880	0.0	C/5031880-5032892,5031605-5031800,5031340-5031524,5030920-5031253,5030642-5030846,5030453-5030532,5030216-5030368	AT3G14950.1  CDS  gene_syn TTL2, Tetratricopetide-repeat Thioredoxin-Like 2  gene TTL2  go_process cell redox homeostasis|GO:0045454||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  product TTL2 (Tetratricopetide-repeat Thioredoxin-Like 2); binding  note Tetratricopetide-repeat Thioredoxin-Like 2 (TTL2); FUNCTIONS IN: binding; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Tetratricopeptide TPR-1 (InterPro:IPR001440), Thioredoxin fold (InterPro:IPR012335), Tetratricopeptide-like helical (InterPro:IPR011990), Thioredoxin domain (InterPro:IPR013766), Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide region (InterPro:IPR013026), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: TTL1 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 1); binding (TAIR:AT1G53300.1); Has 20199 Blast hits to 9725 proteins in 711 species: Archae - 571; Bacteria - 4239; Metazoa - 5587; Fungi - 1912; Plants - 1069; Viruses - 17; Other Eukaryotes - 6804 (source: NCBI BLink).  protein_id AT3G14950.1p  transcript_id AT3G14950.1  protein_id AT3G14950.1p  transcript_id AT3G14950.1  
At3g14960	chr3:005037602	0.0	C/5037602-5037951,5037287-5037439,5037103-5037185,5036909-5037008,5036696-5036809,5036448-5036590,5036252-5036340	AT3G14960.1  CDS  go_component membrane|GO:0016020||IEA  go_process protein amino acid glycosylation|GO:0006486||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product galactosyltransferase family protein  note galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: galactosyltransferase family protein (TAIR:AT1G53290.1); Has 932 Blast hits to 929 proteins in 77 species: Archae - 0; Bacteria - 2; Metazoa - 607; Fungi - 2; Plants - 303; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT3G14960.1p  transcript_id AT3G14960.1  protein_id AT3G14960.1p  transcript_id AT3G14960.1  
At3g14970	chr3:005039071	0.0	C/5039071-5039733	AT3G14970.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G15740.1); Has 2259 Blast hits to 2249 proteins in 165 species: Archae - 0; Bacteria - 0; Metazoa - 783; Fungi - 170; Plants - 1010; Viruses - 2; Other Eukaryotes - 294 (source: NCBI BLink).  protein_id AT3G14970.1p  transcript_id AT3G14970.1  protein_id AT3G14970.1p  transcript_id AT3G14970.1  
At3g14980	chr3:005042544	0.0	C/5042544-5044811,5042200-5042317,5041800-5041882,5041374-5041615,5041164-5041250,5040870-5040969,5040465-5040666,5039931-5040400	AT3G14980.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function protein binding|GO:0005515||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product PHD finger transcription factor, putative  note PHD finger transcription factor, putative; FUNCTIONS IN: protein binding, DNA binding, zinc ion binding, N-acetyltransferase activity; INVOLVED IN: regulation of transcription, DNA-dependent, metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT1G05380.2); Has 3590 Blast hits to 2959 proteins in 154 species: Archae - 1; Bacteria - 6; Metazoa - 2815; Fungi - 238; Plants - 319; Viruses - 0; Other Eukaryotes - 211 (source: NCBI BLink).  protein_id AT3G14980.1p  transcript_id AT3G14980.1  protein_id AT3G14980.1p  transcript_id AT3G14980.1  
At3g14981	chr3:005045110	0.0	W/5045110-5045328	AT3G14981.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G14981.1p  transcript_id AT3G14981.1  protein_id AT3G14981.1p  transcript_id AT3G14981.1  
At3g14990	chr3:005047510	0.0	W/5047510-5047530,5047635-5047835,5048110-5048259,5048354-5048539,5048631-5048711,5048878-5049078,5049194-5049334,5049424-5049621	AT3G14990.1  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process thiamin biosynthetic process|GO:0009228||ISS  go_function catalytic activity|GO:0003824||ISS  product 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative  note 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative; FUNCTIONS IN: catalytic activity; INVOLVED IN: response to cadmium ion, thiamin biosynthetic process; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DJ-1 (InterPro:IPR006287), ThiJ/PfpI (InterPro:IPR002818); BEST Arabidopsis thaliana protein match is: DJ-1 family protein (TAIR:AT1G53280.1); Has 6214 Blast hits to 3737 proteins in 1037 species: Archae - 210; Bacteria - 4967; Metazoa - 446; Fungi - 43; Plants - 170; Viruses - 0; Other Eukaryotes - 378 (source: NCBI BLink).  protein_id AT3G14990.1p  transcript_id AT3G14990.1  protein_id AT3G14990.1p  transcript_id AT3G14990.1  
At3g14990	chr3:005047683	0.0	W/5047683-5047835,5048110-5048259,5048354-5048539,5048631-5048711,5048878-5049078,5049194-5049334,5049424-5049621	AT3G14990.2  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process thiamin biosynthetic process|GO:0009228||ISS  go_function catalytic activity|GO:0003824||ISS  product 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative  note 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative; FUNCTIONS IN: catalytic activity; INVOLVED IN: response to cadmium ion, thiamin biosynthetic process; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DJ-1 (InterPro:IPR006287), ThiJ/PfpI (InterPro:IPR002818); BEST Arabidopsis thaliana protein match is: DJ-1 family protein (TAIR:AT1G53280.1); Has 6133 Blast hits to 3702 proteins in 1031 species: Archae - 208; Bacteria - 4886; Metazoa - 441; Fungi - 43; Plants - 180; Viruses - 0; Other Eukaryotes - 375 (source: NCBI BLink).  protein_id AT3G14990.2p  transcript_id AT3G14990.2  protein_id AT3G14990.2p  transcript_id AT3G14990.2  
At3g14990	chr3:005047683	0.0	W/5047683-5047835,5048110-5048259,5048354-5048539,5048631-5048711,5048878-5049078,5049194-5049334,5049424-5049621	AT3G14990.3  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process thiamin biosynthetic process|GO:0009228||ISS  go_function catalytic activity|GO:0003824||ISS  product 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative  note 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative; FUNCTIONS IN: catalytic activity; INVOLVED IN: response to cadmium ion, thiamin biosynthetic process; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DJ-1 (InterPro:IPR006287), ThiJ/PfpI (InterPro:IPR002818); BEST Arabidopsis thaliana protein match is: DJ-1 family protein (TAIR:AT1G53280.1); Has 6133 Blast hits to 3702 proteins in 1031 species: Archae - 208; Bacteria - 4886; Metazoa - 441; Fungi - 43; Plants - 180; Viruses - 0; Other Eukaryotes - 375 (source: NCBI BLink).  protein_id AT3G14990.3p  transcript_id AT3G14990.3  protein_id AT3G14990.3p  transcript_id AT3G14990.3  
At3g15000	chr3:005050321	0.0	W/5050321-5050709,5050881-5050978,5051063-5051128,5051487-5052121	AT3G15000.1  CDS  go_component mitochondrion|GO:0005739|15276431|IDA  go_component mitochondrion|GO:0005739|11743114|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  product unknown protein  note LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: plastid developmental protein DAG, putative (TAIR:AT3G06790.2); Has 50779 Blast hits to 24732 proteins in 941 species: Archae - 10; Bacteria - 4862; Metazoa - 25623; Fungi - 7071; Plants - 6957; Viruses - 900; Other Eukaryotes - 5356 (source: NCBI BLink).  protein_id AT3G15000.1p  transcript_id AT3G15000.1  protein_id AT3G15000.1p  transcript_id AT3G15000.1  
At3g15010	chr3:005052844	0.0	W/5052844-5054058	AT3G15010.1  CDS  go_component nucleolus|GO:0005730|15496452|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: UBP1 interacting protein 2a (UBA2a) (TAIR:AT3G56860.3); Has 51247 Blast hits to 23497 proteins in 1073 species: Archae - 19; Bacteria - 12313; Metazoa - 24210; Fungi - 3165; Plants - 6052; Viruses - 307; Other Eukaryotes - 5181 (source: NCBI BLink).  protein_id AT3G15010.1p  transcript_id AT3G15010.1  protein_id AT3G15010.1p  transcript_id AT3G15010.1  
At3g15010	chr3:005052844	0.0	W/5052844-5054058	AT3G15010.2  CDS  go_component nucleolus|GO:0005730|15496452|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: UBP1 interacting protein 2a (UBA2a) (TAIR:AT3G56860.3); Has 51247 Blast hits to 23497 proteins in 1073 species: Archae - 19; Bacteria - 12313; Metazoa - 24210; Fungi - 3165; Plants - 6052; Viruses - 307; Other Eukaryotes - 5181 (source: NCBI BLink).  protein_id AT3G15010.2p  transcript_id AT3G15010.2  protein_id AT3G15010.2p  transcript_id AT3G15010.2  
At3g15020	chr3:005056139	0.0	W/5056139-5056381,5056508-5056681,5056833-5057001,5057148-5057209,5057299-5057420,5057591-5057708,5057804-5057941	AT3G15020.1  CDS  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function malate dehydrogenase activity|GO:0016615||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_function L-malate dehydrogenase activity|GO:0030060||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function malate dehydrogenase activity|GO:0016615||ISS  product malate dehydrogenase (NAD), mitochondrial, putative  note malate dehydrogenase (NAD), mitochondrial, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: defense response to bacterium; LOCATED IN: mitochondrion, apoplast, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Malate dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria (InterPro:IPR010097), NAD(P)-binding (InterPro:IPR016040), Lactate/malate dehydrogenase (InterPro:IPR001236), L-lactate/malate dehydrogenase (InterPro:IPR001557), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: malate dehydrogenase (NAD), mitochondrial (TAIR:AT1G53240.1); Has 10206 Blast hits to 10203 proteins in 2324 species: Archae - 177; Bacteria - 5645; Metazoa - 997; Fungi - 364; Plants - 520; Viruses - 0; Other Eukaryotes - 2503 (source: NCBI BLink).  protein_id AT3G15020.1p  transcript_id AT3G15020.1  protein_id AT3G15020.1p  transcript_id AT3G15020.1  
At3g15020	chr3:005056139	0.0	W/5056139-5056381,5056508-5056681,5056833-5057001,5057148-5057209,5057299-5057420,5057591-5057714,5057809-5057865	AT3G15020.2  CDS  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function malate dehydrogenase activity|GO:0016615||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_function L-malate dehydrogenase activity|GO:0030060||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function malate dehydrogenase activity|GO:0016615||ISS  product malate dehydrogenase (NAD), mitochondrial, putative  note malate dehydrogenase (NAD), mitochondrial, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: defense response to bacterium; LOCATED IN: mitochondrion, apoplast, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Malate dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria (InterPro:IPR010097), NAD(P)-binding (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Lactate/malate dehydrogenase (InterPro:IPR001236), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: malate dehydrogenase (NAD), mitochondrial (TAIR:AT1G53240.1); Has 9886 Blast hits to 9884 proteins in 2316 species: Archae - 177; Bacteria - 5614; Metazoa - 992; Fungi - 363; Plants - 334; Viruses - 0; Other Eukaryotes - 2406 (source: NCBI BLink).  protein_id AT3G15020.2p  transcript_id AT3G15020.2  protein_id AT3G15020.2p  transcript_id AT3G15020.2  
At3g15030	chr3:005062308	0.0	W/5062308-5063570	AT3G15030.1  CDS  gene_syn MEE35, TCP family transcription factor 4, TCP4, maternal effect embryo arrest 35  gene TCP4  function Arabidopsis thaliana TCP family transcription factor. Regulated by miR319. Involved in heterchronic regulation of leaf differentiation.  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process leaf morphogenesis|GO:0009965|18805992|IGI  go_process cell differentiation|GO:0030154|18805992|IGI  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process positive regulation of development, heterochronic|GO:0045962|18805992|IGI  go_process leaf development|GO:0048366|16169896|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product TCP4 (TCP family transcription factor 4); transcription factor  note TCP family transcription factor 4 (TCP4); FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP3; transcription factor (TAIR:AT1G53230.1); Has 1338 Blast hits to 1338 proteins in 304 species: Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 9; Plants - 1238; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G15030.1p  transcript_id AT3G15030.1  protein_id AT3G15030.1p  transcript_id AT3G15030.1  
At3g15030	chr3:005062308	0.0	W/5062308-5063570	AT3G15030.2  CDS  gene_syn MEE35, TCP family transcription factor 4, TCP4, maternal effect embryo arrest 35  gene TCP4  function Arabidopsis thaliana TCP family transcription factor. Regulated by miR319. Involved in heterchronic regulation of leaf differentiation.  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process leaf morphogenesis|GO:0009965|18805992|IGI  go_process cell differentiation|GO:0030154|18805992|IGI  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process positive regulation of development, heterochronic|GO:0045962|18805992|IGI  go_process leaf development|GO:0048366|16169896|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product TCP4 (TCP family transcription factor 4); transcription factor  note TCP family transcription factor 4 (TCP4); FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP3; transcription factor (TAIR:AT1G53230.1); Has 1338 Blast hits to 1338 proteins in 304 species: Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 9; Plants - 1238; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G15030.2p  transcript_id AT3G15030.2  protein_id AT3G15030.2p  transcript_id AT3G15030.2  
At3g15040	chr3:005065445	0.0	C/5065445-5066176	AT3G15040.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF584 (InterPro:IPR007608); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21970.1); Has 2804 Blast hits to 412 proteins in 66 species: Archae - 0; Bacteria - 22; Metazoa - 419; Fungi - 51; Plants - 212; Viruses - 0; Other Eukaryotes - 2100 (source: NCBI BLink).  protein_id AT3G15040.1p  transcript_id AT3G15040.1  protein_id AT3G15040.1p  transcript_id AT3G15040.1  
At3g15050	chr3:005067818	0.0	C/5067818-5067892,5067628-5067744,5067222-5067563,5066879-5067124	AT3G15050.1  CDS  gene_syn IQ-domain 10, IQD10  gene IQD10  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product IQD10 (IQ-domain 10); calmodulin binding  note IQ-domain 10 (IQD10); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: iqd9 (IQ-domain 9); calmodulin binding (TAIR:AT2G33990.1); Has 340 Blast hits to 336 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 340; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G15050.1p  transcript_id AT3G15050.1  protein_id AT3G15050.1p  transcript_id AT3G15050.1  
At3g15055	chr3:005068294	0.0	C/5068294-5068367	AT3G15055.1  tRNA  gene_syn 60531.TRNA-ILE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ile (anticodon: TAT)  transcript_id AT3G15055.1  
At3g15060	chr3:005069239	0.0	W/5069239-5069459,5069593-5070025	AT3G15060.1  CDS  gene_syn Arabidopsis Rab GTPase homolog A1g, AtRABA1g  gene AtRABA1g  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product AtRABA1g (Arabidopsis Rab GTPase homolog A1g); GTP binding  note Arabidopsis Rab GTPase homolog A1g (AtRABA1g); FUNCTIONS IN: GTP binding; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: AtRABA1f (Arabidopsis Rab GTPase homolog A1f); GTP binding (TAIR:AT5G60860.1); Has 22374 Blast hits to 22336 proteins in 611 species: Archae - 21; Bacteria - 95; Metazoa - 12471; Fungi - 2920; Plants - 1850; Viruses - 19; Other Eukaryotes - 4998 (source: NCBI BLink).  protein_id AT3G15060.1p  transcript_id AT3G15060.1  protein_id AT3G15060.1p  transcript_id AT3G15060.1  
At3g15070	chr3:005071627	0.0	C/5071627-5072344,5071216-5071538,5071012-5071110,5070746-5070901,5070472-5070636	AT3G15070.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G53190.2); Has 5164 Blast hits to 5155 proteins in 208 species: Archae - 0; Bacteria - 4; Metazoa - 1886; Fungi - 403; Plants - 1788; Viruses - 38; Other Eukaryotes - 1045 (source: NCBI BLink).  protein_id AT3G15070.1p  transcript_id AT3G15070.1  protein_id AT3G15070.1p  transcript_id AT3G15070.1  
At3g15080	chr3:005074319	0.0	W/5074319-5074405,5074505-5074574,5074674-5074752,5075127-5075208,5075409-5075517,5075656-5075744,5075821-5075885,5076002-5076080,5076160-5076327	AT3G15080.1  CDS  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function exonuclease activity|GO:0004527||IEA  go_component intracellular|GO:0005622||ISS  go_function exonuclease activity|GO:0004527||ISS  product exonuclease family protein  note exonuclease family protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T and DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: exonuclease family protein (TAIR:AT5G40310.1); Has 1314 Blast hits to 1314 proteins in 179 species: Archae - 0; Bacteria - 14; Metazoa - 651; Fungi - 418; Plants - 111; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).  protein_id AT3G15080.1p  transcript_id AT3G15080.1  protein_id AT3G15080.1p  transcript_id AT3G15080.1  
At3g15090	chr3:005076847	0.0	W/5076847-5077077,5077387-5077614,5077716-5077789,5077931-5078090,5078185-5078304,5078421-5078529,5078692-5078870	AT3G15090.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function zinc ion binding|GO:0008270||ISS  product oxidoreductase, zinc-binding dehydrogenase family protein  note oxidoreductase, zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, binding, zinc ion binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: oxidoreductase, zinc-binding dehydrogenase family protein (TAIR:AT1G23740.1); Has 20659 Blast hits to 20565 proteins in 1484 species: Archae - 253; Bacteria - 11042; Metazoa - 1064; Fungi - 2188; Plants - 463; Viruses - 0; Other Eukaryotes - 5649 (source: NCBI BLink).  protein_id AT3G15090.1p  transcript_id AT3G15090.1  protein_id AT3G15090.1p  transcript_id AT3G15090.1  
At3g15095	chr3:005081996	0.0	W/5081996-5084050	AT3G15095.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 9532 Blast hits to 5756 proteins in 534 species: Archae - 60; Bacteria - 889; Metazoa - 3753; Fungi - 648; Plants - 278; Viruses - 137; Other Eukaryotes - 3767 (source: NCBI BLink).  protein_id AT3G15095.1p  transcript_id AT3G15095.1  protein_id AT3G15095.1p  transcript_id AT3G15095.1  
At3g15095	chr3:005082392	0.0	W/5082392-5084050	AT3G15095.2  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 8978 Blast hits to 5536 proteins in 522 species: Archae - 55; Bacteria - 879; Metazoa - 3411; Fungi - 641; Plants - 264; Viruses - 140; Other Eukaryotes - 3588 (source: NCBI BLink).  protein_id AT3G15095.2p  transcript_id AT3G15095.2  protein_id AT3G15095.2p  transcript_id AT3G15095.2  
At3g15095	chr3:005082830	0.0	W/5082830-5084050	AT3G15095.3  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 5251 Blast hits to 2929 proteins in 311 species: Archae - 26; Bacteria - 385; Metazoa - 1873; Fungi - 354; Plants - 156; Viruses - 121; Other Eukaryotes - 2336 (source: NCBI BLink).  protein_id AT3G15095.3p  transcript_id AT3G15095.3  protein_id AT3G15095.3p  transcript_id AT3G15095.3  
At3g15110	chr3:005085476	0.0	C/5085476-5085823,5085089-5085310,5084688-5084713,5084394-5084598	AT3G15110.1  CDS  gene_syn F4B12.2  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 49 Blast hits to 49 proteins in 24 species: Archae - 0; Bacteria - 31; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G15110.1p  transcript_id AT3G15110.1  protein_id AT3G15110.1p  transcript_id AT3G15110.1  
At3g15111	chr3:005085860	0.0	W/5085860-5085976	AT3G15111.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G15111.1p  transcript_id AT3G15111.1  protein_id AT3G15111.1p  transcript_id AT3G15111.1  
At3g15115	chr3:005086696	0.0	C/5086696-5087352,5086219-5086581	AT3G15115.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53180.1); Has 26 Blast hits to 26 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G15115.1p  transcript_id AT3G15115.1  protein_id AT3G15115.1p  transcript_id AT3G15115.1  
At3g15120	chr3:005093773	0.0	C/5093773-5095482,5093216-5093326,5091301-5093062,5090915-5091153,5089769-5090628,5088487-5089669	AT3G15120.1  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATPase activity|GO:0016887||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: cell division cycle protein 48-related / CDC48-related (TAIR:AT1G05910.1); Has 65380 Blast hits to 45049 proteins in 2200 species: Archae - 999; Bacteria - 13338; Metazoa - 21190; Fungi - 6719; Plants - 3370; Viruses - 463; Other Eukaryotes - 19301 (source: NCBI BLink).  protein_id AT3G15120.1p  transcript_id AT3G15120.1  protein_id AT3G15120.1p  transcript_id AT3G15120.1  
At3g15130	chr3:005097153	0.0	C/5097153-5099222	AT3G15130.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G13650.1); Has 15332 Blast hits to 4933 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 50; Plants - 14960; Viruses - 0; Other Eukaryotes - 273 (source: NCBI BLink).  protein_id AT3G15130.1p  transcript_id AT3G15130.1  protein_id AT3G15130.1p  transcript_id AT3G15130.1  
At3g15140	chr3:005101439	0.0	C/5101439-5101717,5100940-5101142,5100592-5100672,5100212-5100337,5099991-5100114,5099712-5099912	AT3G15140.1  CDS  go_component chloroplast|GO:0009507||IEA  go_component intracellular|GO:0005622||ISS  go_function exonuclease activity|GO:0004527||ISS  product exonuclease family protein  note exonuclease family protein; FUNCTIONS IN: exonuclease activity; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease, RNase T and DNA polymerase III (InterPro:IPR013520); Has 439 Blast hits to 439 proteins in 90 species: Archae - 0; Bacteria - 29; Metazoa - 281; Fungi - 11; Plants - 34; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT3G15140.1p  transcript_id AT3G15140.1  protein_id AT3G15140.1p  transcript_id AT3G15140.1  
At3g15150	chr3:005103993	0.0	C/5103993-5104082,5103699-5103770,5103228-5103338,5103023-5103133,5102794-5102933,5102446-5102528,5102210-5102352	AT3G15150.1  CDS  go_function zinc ion binding|GO:0008270||IEA  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MIZ-type (InterPro:IPR004181); Has 205 Blast hits to 205 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 129; Fungi - 36; Plants - 24; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT3G15150.1p  transcript_id AT3G15150.1  protein_id AT3G15150.1p  transcript_id AT3G15150.1  
At3g15160	chr3:005104582	0.0	W/5104582-5104683,5104776-5104922,5105018-5105109,5105228-5105324,5105617-5105660,5105734-5105822,5106062-5106159,5106239-5106385,5106555-5106702,5106802-5106878,5107099-5107170,5107334-5107381,5107447-5107574,5107679-5107823,5107922-5108126,5108230-5108279	AT3G15160.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 67 Blast hits to 65 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 48; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G15160.1p  transcript_id AT3G15160.1  protein_id AT3G15160.1p  transcript_id AT3G15160.1  
At3g15170	chr3:005109912	0.0	W/5109912-5110110,5110624-5110907,5110986-5111435	AT3G15170.1  CDS  gene_syn ATNAC1, CUC1, CUP-SHAPED COTYLEDON1, anac054  gene CUC1  function Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl, auxins, ethylene). <i>Cuc</i> mutant was first recognized at the heart stage, where embryos lacking two distinct bulges of cotyledonary primordia were observed.  go_component cellular_component|GO:0005575||ND  go_process response to salt stress|GO:0009651|16359384|IEP  go_process response to ethylene stimulus|GO:0009723|16359384|IEP  go_process response to auxin stimulus|GO:0009733|16359384|IEP  go_process embryonic development|GO:0009790|9212461|IGI  go_process flower development|GO:0009908|9212461|IGI  go_process flower development|GO:0009908|9212461|IMP  go_process meristem initiation|GO:0010014|9212461|IGI  go_process meristem initiation|GO:0010014|9212461|IMP  go_process primary shoot apical meristem specification|GO:0010072|16359384|TAS  go_process formation of organ boundary|GO:0010160|9212461|IGI  go_process secondary shoot formation|GO:0010223|18346190|IMP  go_process gynoecium development|GO:0048467|10750709|IGI  go_process lateral root development|GO:0048527|16359384|TAS  go_process negative regulation of cell division|GO:0051782|17287247|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|16359384|TAS  product CUC1 (CUP-SHAPED COTYLEDON1); transcription factor  note CUP-SHAPED COTYLEDON1 (CUC1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 12 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: CUC2 (CUP-SHAPED COTYLEDON 2); transcription factor (TAIR:AT5G53950.1); Has 1635 Blast hits to 1632 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1635; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G15170.1p  transcript_id AT3G15170.1  protein_id AT3G15170.1p  transcript_id AT3G15170.1  
At3g15180	chr3:005111952	0.0	W/5111952-5112006,5112106-5112169,5112319-5112427,5112553-5112615,5112715-5112818,5113051-5113117,5113215-5113286,5113369-5113530,5113637-5113710,5113800-5113897,5114203-5114310,5114481-5114578,5114762-5114899,5115008-5115055,5115289-5115403,5115515-5115612,5115717-5115803	AT3G15180.1  CDS  go_component plasma membrane|GO:0005886|17151019|IDA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product proteasome-related  note proteasome-related; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 82 Blast hits to 82 proteins in 33 species: Archae - 0; Bacteria - 1; Metazoa - 56; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G15180.1p  transcript_id AT3G15180.1  protein_id AT3G15180.1p  transcript_id AT3G15180.1  
At3g15190	chr3:005116216	0.0	W/5116216-5116405,5116555-5116715,5117155-5117412	AT3G15190.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process translation|GO:0006412||IEA  go_function RNA binding|GO:0003723||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product chloroplast 30S ribosomal protein S20, putative  note chloroplast 30S ribosomal protein S20, putative; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S20 (InterPro:IPR002583); Has 2583 Blast hits to 2583 proteins in 880 species: Archae - 0; Bacteria - 1893; Metazoa - 2; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 657 (source: NCBI BLink).  protein_id AT3G15190.1p  transcript_id AT3G15190.1  protein_id AT3G15190.1p  transcript_id AT3G15190.1  
At3g15200	chr3:005117489	0.0	C/5117489-5119060	AT3G15200.1  CDS  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cytosolic ribosome; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G15010.1); Has 12209 Blast hits to 4262 proteins in 147 species: Archae - 1; Bacteria - 0; Metazoa - 100; Fungi - 114; Plants - 11628; Viruses - 0; Other Eukaryotes - 366 (source: NCBI BLink).  protein_id AT3G15200.1p  transcript_id AT3G15200.1  protein_id AT3G15200.1p  transcript_id AT3G15200.1  
At3g15210	chr3:005121472	0.0	W/5121472-5122140	AT3G15210.1  CDS  gene_syn ATERF-4, ATERF4, ERF4, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4, RAP2.5, RELATED TO AP2 5  gene ERF4  function Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-4). The protein contains one AP2 domain. Acts as a negative regulator of JA-responsive defense gene expression and resistance to the necrotrophic fungal pathogen Fusarium oxysporum and antagonizes JA inhibition of root elongation.  go_component nucleus|GO:0005634|10715325|TAS  go_component nucleus|GO:0005634|11487705|IC  go_component nuclear body|GO:0016604|16021341|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|10715325|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|10715325|TAS  go_process response to ethylene stimulus|GO:0009723|16021341|IMP  go_process response to abscisic acid stimulus|GO:0009737|16021341|IMP  go_process induced systemic resistance, jasmonic acid mediated signaling pathway|GO:0009864|16183832|IMP  go_process negative regulation of ethylene mediated signaling pathway|GO:0010105|10715325|TAS  go_process response to chitin|GO:0010200|17722694|IEP  go_function DNA binding|GO:0003677|10715325|TAS  go_function transcription factor activity|GO:0003700|10715325|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein binding|GO:0005515|16429262|IPI  go_function transcription repressor activity|GO:0016564|10715325|IDA  go_function transcription repressor activity|GO:0016564|10715325|TAS  go_function transcription repressor activity|GO:0016564|16183832|IGI  product ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4); DNA binding / protein binding / transcription factor/ transcription repressor  note ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4 (ERF4); FUNCTIONS IN: protein binding, transcription repressor activity, transcription factor activity, DNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nuclear body, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ERF8; DNA binding / transcription factor/ transcription repressor (TAIR:AT1G53170.1); Has 3978 Blast hits to 3737 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3968; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT3G15210.1p  transcript_id AT3G15210.1  protein_id AT3G15210.1p  transcript_id AT3G15210.1  
At3g15220	chr3:005131658	0.0	C/5131658-5131752,5131447-5131503,5131160-5131187,5130956-5131078,5130693-5130804,5130563-5130600,5130397-5130450,5129859-5129927,5129611-5129727,5129456-5129524,5129287-5129366,5128976-5129104,5128633-5128900,5128280-5128372,5128027-5128191,5127742-5127872,5127532-5127664,5127314-5127438,5127071-5127226,5126899-5126929	AT3G15220.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cytoplasm|GO:0005737|15469496|IDA  go_component spindle|GO:0005819|15469496|IDA  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: spindle, cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATMAP4K ALPHA1; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT1G53165.2); Has 97460 Blast hits to 95819 proteins in 3033 species: Archae - 88; Bacteria - 8614; Metazoa - 42541; Fungi - 8570; Plants - 18723; Viruses - 614; Other Eukaryotes - 18310 (source: NCBI BLink).  protein_id AT3G15220.1p  transcript_id AT3G15220.1  protein_id AT3G15220.1p  transcript_id AT3G15220.1  
At3g15240	chr3:005133681	0.0	W/5133681-5133856,5133948-5134001,5134496-5134630,5134792-5134897,5134997-5135038,5135131-5135187,5135279-5135797	AT3G15240.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G53900.2); Has 145 Blast hits to 145 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 4; Plants - 125; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G15240.2p  transcript_id AT3G15240.2  protein_id AT3G15240.2p  transcript_id AT3G15240.2  
At3g15250	chr3:005136503	0.0	C/5136503-5137183	AT3G15250.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53163.1); Has 475 Blast hits to 212 proteins in 55 species: Archae - 0; Bacteria - 19; Metazoa - 271; Fungi - 73; Plants - 18; Viruses - 1; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT3G15250.1p  transcript_id AT3G15250.1  protein_id AT3G15250.1p  transcript_id AT3G15250.1  
At3g15251	chr3:005137205	0.0	W/5137205-5137318	AT3G15251.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G15251.1p  transcript_id AT3G15251.1  protein_id AT3G15251.1p  transcript_id AT3G15251.1  
At3g15260	chr3:005138842	0.0	W/5138842-5138886,5139181-5139435,5139518-5139794,5139881-5140035,5140105-5140242	AT3G15260.1  CDS  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT4G28400.1); Has 4540 Blast hits to 4534 proteins in 402 species: Archae - 3; Bacteria - 375; Metazoa - 1354; Fungi - 535; Plants - 1305; Viruses - 11; Other Eukaryotes - 957 (source: NCBI BLink).  protein_id AT3G15260.1p  transcript_id AT3G15260.1  protein_id AT3G15260.1p  transcript_id AT3G15260.1  
At3g15260	chr3:005138842	0.0	W/5138842-5138886,5139181-5139435,5139518-5139794,5139881-5140035,5140105-5140242	AT3G15260.2  CDS  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT4G28400.1); Has 4540 Blast hits to 4534 proteins in 402 species: Archae - 3; Bacteria - 375; Metazoa - 1354; Fungi - 535; Plants - 1305; Viruses - 11; Other Eukaryotes - 957 (source: NCBI BLink).  protein_id AT3G15260.2p  transcript_id AT3G15260.2  protein_id AT3G15260.2p  transcript_id AT3G15260.2  
At3g15270	chr3:005140931	0.0	C/5140931-5141256,5140624-5140843	AT3G15270.1  CDS  gene_syn SPL5, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5  gene SPL5  function Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3 UTR.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of vegetative phase change|GO:0010321|16914499|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5); DNA binding / transcription factor  note SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5 (SPL5); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of vegetative phase change, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Squamosa promoter-binding protein (InterPro:IPR017238), Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4); DNA binding / transcription factor (TAIR:AT1G53160.2); Has 528 Blast hits to 528 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 528; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G15270.1p  transcript_id AT3G15270.1  protein_id AT3G15270.1p  transcript_id AT3G15270.1  
At3g15280	chr3:005144533	0.0	C/5144533-5144670,5144144-5144458	AT3G15280.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, 4 anthesis, petal differentiation and expansion stage; Has 19 Blast hits to 19 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G15280.1p  transcript_id AT3G15280.1  protein_id AT3G15280.1p  transcript_id AT3G15280.1  
At3g15290	chr3:005145054	0.0	W/5145054-5145239,5145528-5145749,5145859-5145971,5146250-5146613	AT3G15290.1  CDS  go_component peroxisome|GO:0005777|17951448|IDA  go_process fatty acid metabolic process|GO:0006631||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function coenzyme binding|GO:0050662||IEA  go_function 3-hydroxybutyryl-CoA dehydrogenase activity|GO:0008691||ISS  product 3-hydroxybutyryl-CoA dehydrogenase, putative  note 3-hydroxybutyryl-CoA dehydrogenase, putative; FUNCTIONS IN: coenzyme binding, oxidoreductase activity, 3-hydroxybutyryl-CoA dehydrogenase activity, binding, catalytic activity; INVOLVED IN: fatty acid metabolic process, metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 3-hydroxyacyl-CoA dehydrogenase, conserved site (InterPro:IPR006180), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), NAD(P)-binding (InterPro:IPR016040), 3-hydroxyacyl-CoA dehydrogenase, NAD binding (InterPro:IPR006176), 3-hydroxyacyl-CoA dehydrogenase, C-terminal (InterPro:IPR006108); BEST Arabidopsis thaliana protein match is: AIM1 (ABNORMAL INFLORESCENCE MERISTEM); enoyl-CoA hydratase (TAIR:AT4G29010.1); Has 10012 Blast hits to 9491 proteins in 1060 species: Archae - 201; Bacteria - 5136; Metazoa - 507; Fungi - 164; Plants - 85; Viruses - 0; Other Eukaryotes - 3919 (source: NCBI BLink).  protein_id AT3G15290.1p  transcript_id AT3G15290.1  protein_id AT3G15290.1p  transcript_id AT3G15290.1  
At3g15300	chr3:005147551	0.0	C/5147551-5148210	AT3G15300.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product VQ motif-containing protein  note VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT5G53830.1); Has 79 Blast hits to 79 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G15300.1p  transcript_id AT3G15300.1  protein_id AT3G15300.1p  transcript_id AT3G15300.1  
At3g15310	chr3:005152099	0.0	C/5152099-5153642	AT3G15310.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32621.1); similar to hypothetical protein 24.t00017 [Brassica oleracea] (GB:ABD64939.1); contains InterPro domain Protein of unknown function DUF635; (InterPro:IPR006912); contains InterPro domain Bacterial adhesion; (InterPro:IPR008966)  
At3g15320	chr3:005154208	0.0	C/5154208-5155071	AT3G15320.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32620.1); similar to hypothetical protein 24.t00018 [Brassica oleracea] (GB:ABD64940.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)  
At3g15330	chr3:005158749	0.0	W/5158749-5159597	AT3G15330.1  pseudogenic_transcript  pseudo  function pseudogene of the NLI interacting factor (NIF) protein family  
At3g15340	chr3:005161725	0.0	C/5161725-5161874,5161485-5161631,5161197-5161391,5161008-5161106,5160409-5160912,5160016-5160330	AT3G15340.2  CDS  gene_syn PPI2, proton pump interactor 2  gene PPI2  function Hypothetical protein similar to PPI1, a protein that interacts with the plasma membrane H+ ATPase AHA1  go_component cellular_component|GO:0005575||ND  go_process regulation of proton transport|GO:0010155|12182706|ISS  go_function protein binding|GO:0005515|12182706|ISS  product PPI2 (proton pump interactor 2); protein binding  note proton pump interactor 2 (PPI2); FUNCTIONS IN: protein binding; INVOLVED IN: regulation of proton transport; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36780.1); Has 9060 Blast hits to 6705 proteins in 534 species: Archae - 20; Bacteria - 691; Metazoa - 4080; Fungi - 800; Plants - 288; Viruses - 32; Other Eukaryotes - 3149 (source: NCBI BLink).  protein_id AT3G15340.2p  transcript_id AT3G15340.2  protein_id AT3G15340.2p  transcript_id AT3G15340.2  
At3g15340	chr3:005161973	0.0	C/5161973-5162305,5161725-5161901,5161485-5161631,5161197-5161391,5161008-5161106,5160409-5160912,5160016-5160330	AT3G15340.1  CDS  gene_syn PPI2, proton pump interactor 2  gene PPI2  function Hypothetical protein similar to PPI1, a protein that interacts with the plasma membrane H+ ATPase AHA1  go_component cellular_component|GO:0005575||ND  go_process regulation of proton transport|GO:0010155|12182706|ISS  go_function protein binding|GO:0005515|12182706|ISS  product PPI2 (proton pump interactor 2); protein binding  note proton pump interactor 2 (PPI2); FUNCTIONS IN: protein binding; INVOLVED IN: regulation of proton transport; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36780.1); Has 24475 Blast hits to 15280 proteins in 958 species: Archae - 93; Bacteria - 2441; Metazoa - 11140; Fungi - 2159; Plants - 763; Viruses - 92; Other Eukaryotes - 7787 (source: NCBI BLink).  protein_id AT3G15340.1p  transcript_id AT3G15340.1  protein_id AT3G15340.1p  transcript_id AT3G15340.1  
At3g15350	chr3:005167250	0.0	W/5167250-5167826,5167931-5168006,5168088-5168203,5168377-5168882	AT3G15350.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||ISS  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function acetylglucosaminyltransferase activity|GO:0008375||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein  note glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 14 (InterPro:IPR003406); BEST Arabidopsis thaliana protein match is: acetylglucosaminyltransferase (TAIR:AT1G53100.1); Has 693 Blast hits to 692 proteins in 87 species: Archae - 0; Bacteria - 18; Metazoa - 462; Fungi - 0; Plants - 188; Viruses - 14; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT3G15350.1p  transcript_id AT3G15350.1  protein_id AT3G15350.1p  transcript_id AT3G15350.1  
At3g15350	chr3:005167250	0.0	W/5167250-5167826,5167931-5168006,5168088-5168203,5168377-5168882	AT3G15350.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||ISS  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function acetylglucosaminyltransferase activity|GO:0008375||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein  note glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 14 (InterPro:IPR003406); BEST Arabidopsis thaliana protein match is: acetylglucosaminyltransferase (TAIR:AT1G53100.1); Has 693 Blast hits to 692 proteins in 87 species: Archae - 0; Bacteria - 18; Metazoa - 462; Fungi - 0; Plants - 188; Viruses - 14; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT3G15350.2p  transcript_id AT3G15350.2  protein_id AT3G15350.2p  transcript_id AT3G15350.2  
At3g15354	chr3:005171773	0.0	C/5171773-5172480,5171486-5171643,5170421-5171381,5170214-5170336,5169760-5170071,5169616-5169675,5169327-5169518	AT3G15354.1  CDS  gene_syn SPA1-RELATED 3, SPA3  gene SPA3  function Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA3 (and SPA4) predominantly regulates elongation growth in adult plants.  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function signal transducer activity|GO:0004871||ISS  go_function protein binding|GO:0005515|16854975|IPI  product SPA3 (SPA1-RELATED 3); protein binding / signal transducer  note SPA1-RELATED 3 (SPA3); FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; CONTAINS InterPro DOMAIN/s: Serine/threonine protein kinase (InterPro:IPR002290), WD40 repeat (InterPro:IPR001680), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), WD40 repeat-like (InterPro:IPR011046), Protein kinase, core (InterPro:IPR000719), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: SPA4 (SPA1-RELATED 4); protein binding / signal transducer (TAIR:AT1G53090.2); Has 16092 Blast hits to 11306 proteins in 400 species: Archae - 18; Bacteria - 2810; Metazoa - 6340; Fungi - 3140; Plants - 1455; Viruses - 2; Other Eukaryotes - 2327 (source: NCBI BLink).  protein_id AT3G15354.1p  transcript_id AT3G15354.1  protein_id AT3G15354.1p  transcript_id AT3G15354.1  
At3g15359	chr3:005173593	0.0	W/5173593-5173781	AT3G15359.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G15359.1p  transcript_id AT3G15359.1  protein_id AT3G15359.1p  transcript_id AT3G15359.1  
At3g15356	chr3:005174603	0.0	C/5174603-5175418	AT3G15356.1  CDS  go_component cell wall|GO:0005618|14595688|IDA  go_component cell wall|GO:0005618|15593128|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function sugar binding|GO:0005529||IEA  go_process biological_process|GO:0008150||ND  go_function carbohydrate binding|GO:0030246||ISS  product legume lectin family protein  note legume lectin family protein; FUNCTIONS IN: carbohydrate binding, sugar binding; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 7 plant structures; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), L-type lectin, plant (InterPro:IPR016363); BEST Arabidopsis thaliana protein match is: legume lectin family protein (TAIR:AT3G16530.1); Has 1383 Blast hits to 1370 proteins in 111 species: Archae - 0; Bacteria - 18; Metazoa - 0; Fungi - 0; Plants - 1349; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT3G15356.1p  transcript_id AT3G15356.1  protein_id AT3G15356.1p  transcript_id AT3G15356.1  
At3g15351	chr3:005176726	0.0	W/5176726-5176809,5177026-5177293,5177386-5177531	AT3G15351.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 21 Blast hits to 21 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G15351.1p  transcript_id AT3G15351.1  protein_id AT3G15351.1p  transcript_id AT3G15351.1  
At3g15351	chr3:005176726	0.0	W/5176726-5176809,5177026-5177340	AT3G15351.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 16 Blast hits to 16 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G15351.2p  transcript_id AT3G15351.2  protein_id AT3G15351.2p  transcript_id AT3G15351.2  
At3g15351	chr3:005177026	0.0	W/5177026-5177293,5177386-5177531	AT3G15351.3  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages.  protein_id AT3G15351.3p  transcript_id AT3G15351.3  protein_id AT3G15351.3p  transcript_id AT3G15351.3  
At3g15358	chr3:005178205	0.0	W/5178205-5178639	AT3G15358.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53035.1); Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G15358.1p  transcript_id AT3G15358.1  protein_id AT3G15358.1p  transcript_id AT3G15358.1  
At3g15352	chr3:005180266	0.0	W/5180266-5180490	AT3G15352.1  CDS  gene_syn ARABIDOPSIS THALIANA CYTOCHROME C OXIDASE 17, ATCOX17, COX17, CYTOCHROME C OXIDASE 17  gene COX17  function Encodes protein similar to yeast COX17, a copper-binding protein that mediates the delivery of Cu to the mitochondria for the assembly of a functional cytochrome oxidase complex.  go_component mitochondrial intermembrane space|GO:0005758||IEA  go_process response to bacterium|GO:0009617|12177498|IEP  go_process response to copper ion|GO:0046688|12177498|IEP  go_function copper chaperone activity|GO:0016531|12177498|IGI  product ATCOX17; copper chaperone  note ATCOX17; FUNCTIONS IN: copper chaperone activity; INVOLVED IN: response to copper ion, response to bacterium; LOCATED IN: mitochondrial intermembrane space; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase copper chaperone (InterPro:IPR007745); BEST Arabidopsis thaliana protein match is: cytochrome c oxidase copper chaperone family protein (TAIR:AT1G53030.1); Has 225 Blast hits to 225 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 40; Plants - 36; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT3G15352.1p  transcript_id AT3G15352.1  protein_id AT3G15352.1p  transcript_id AT3G15352.1  
At3g15353	chr3:005181276	0.0	C/5181276-5181325,5181020-5181067,5180825-5180936	AT3G15353.1  CDS  gene_syn METALLOTHIONEIN 3, MT3  gene MT3  function metallothionein, binds to and detoxifies excess copper and other metals, limiting oxidative damage  go_component cellular_component|GO:0005575||ND  go_process cellular copper ion homeostasis|GO:0006878|9112777|ISS  go_function copper ion binding|GO:0005507|9112777|IDA  product MT3 (METALLOTHIONEIN 3); copper ion binding  note METALLOTHIONEIN 3 (MT3); FUNCTIONS IN: copper ion binding; INVOLVED IN: cellular copper ion homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plant metallothionein, family 15 (InterPro:IPR000347); Has 220 Blast hits to 220 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 220; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G15353.1p  transcript_id AT3G15353.1  protein_id AT3G15353.1p  transcript_id AT3G15353.1  
At3g15355	chr3:005183858	0.0	W/5183858-5183929,5184447-5184602,5184693-5185448,5185534-5185597,5185680-5185819,5185913-5186224,5186340-5186669	AT3G15355.1  CDS  gene_syn PFU1, PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, UBC25, UBIQUITIN-CONJUGATING ENZYME 25  gene UBC25  go_process post-translational protein modification|GO:0043687||IEA  go_process regulation of protein metabolic process|GO:0051246||IEA  go_function small conjugating protein ligase activity|GO:0019787||IEA  go_component cellular_component|GO:0005575||ND  product UBC25 (UBIQUITIN-CONJUGATING ENZYME 25); small conjugating protein ligase  note UBIQUITIN-CONJUGATING ENZYME 25 (UBC25); FUNCTIONS IN: small conjugating protein ligase activity; INVOLVED IN: regulation of protein metabolic process, post-translational protein modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC26 (UBIQUITIN-CONJUGATING ENZYME 26); ubiquitin-protein ligase (TAIR:AT1G53020.1); Has 4538 Blast hits to 4520 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 2098; Fungi - 838; Plants - 798; Viruses - 13; Other Eukaryotes - 791 (source: NCBI BLink).  protein_id AT3G15355.1p  transcript_id AT3G15355.1  protein_id AT3G15355.1p  transcript_id AT3G15355.1  
At3g15357	chr3:005187164	0.0	W/5187164-5187595	AT3G15357.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: shoot apex, hypocotyl, root, leaf; Has 7002 Blast hits to 2057 proteins in 213 species: Archae - 4; Bacteria - 915; Metazoa - 2028; Fungi - 802; Plants - 311; Viruses - 232; Other Eukaryotes - 2710 (source: NCBI BLink).  protein_id AT3G15357.1p  transcript_id AT3G15357.1  protein_id AT3G15357.1p  transcript_id AT3G15357.1  
At3g15360	chr3:005188448	0.0	W/5188448-5188709,5189138-5189457	AT3G15360.1  CDS  gene_syn ARABIDOPSIS THALIANA MYOSIN 4, ARABIDOPSIS THIOREDOXIN M-TYPE 4, ATHM4, ATM4, MJK13.20, TRX-M4  gene TRX-M4  function encodes a prokaryotic thioredoxin  go_component cell wall|GO:0005618|15593128|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process response to oxidative stress|GO:0006979|11169189|IGI  go_process positive regulation of catalytic activity|GO:0043085|11169189|IDA  go_function enzyme activator activity|GO:0008047|11169189|IDA  product TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4); enzyme activator  note ARABIDOPSIS THIOREDOXIN M-TYPE 4 (TRX-M4); FUNCTIONS IN: enzyme activator activity; INVOLVED IN: response to oxidative stress, positive regulation of catalytic activity; LOCATED IN: thylakoid, chloroplast thylakoid membrane, cell wall, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin (InterPro:IPR005746), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATHM1; enzyme activator (TAIR:AT1G03680.1); Has 15391 Blast hits to 14241 proteins in 1747 species: Archae - 202; Bacteria - 6392; Metazoa - 2609; Fungi - 880; Plants - 1275; Viruses - 9; Other Eukaryotes - 4024 (source: NCBI BLink).  protein_id AT3G15360.1p  transcript_id AT3G15360.1  protein_id AT3G15360.1p  transcript_id AT3G15360.1  
At3g15370	chr3:005190649	0.0	W/5190649-5190781,5190872-5191181,5191667-5191982	AT3G15370.1  CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN 12, ATEXP12, ATEXPA12, ATHEXP ALPHA 1.24, EXP12, EXPANSIN 12  gene ATEXPA12  function member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_process plant-type cell wall organization|GO:0009664||ISS  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828||ISS  product ATEXPA12 (ARABIDOPSIS THALIANA EXPANSIN 12)  note ARABIDOPSIS THALIANA EXPANSIN 12 (ATEXPA12); INVOLVED IN: plant-type cell wall organization, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17) (TAIR:AT4G01630.1); Has 1433 Blast hits to 1432 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 27; Plants - 1375; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT3G15370.1p  transcript_id AT3G15370.1  protein_id AT3G15370.1p  transcript_id AT3G15370.1  
At3g15380	chr3:005193319	0.0	W/5193319-5193503,5193787-5194145,5194225-5194370,5194471-5194654,5194746-5194819,5194926-5195039,5195123-5195482,5195567-5195827,5195909-5196136,5196244-5196435	AT3G15380.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  product choline transporter-related  note choline transporter-related; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); BEST Arabidopsis thaliana protein match is: choline transporter-related (TAIR:AT4G38640.1); Has 687 Blast hits to 679 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 406; Fungi - 83; Plants - 66; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).  protein_id AT3G15380.1p  transcript_id AT3G15380.1  protein_id AT3G15380.1p  transcript_id AT3G15380.1  
At3g15390	chr3:005198976	0.0	C/5198976-5199531,5198839-5198864,5198290-5198358,5198124-5198194,5197787-5198028,5197614-5197693,5197451-5197507,5197291-5197358,5197063-5197184,5196908-5196969,5196689-5196808	AT3G15390.1  CDS  gene_syn SDE5, silencing defective 5  gene SDE5  function Encodes a novel protein that is similar to PRL1 interacting factor and is involved in virus induced silencing.  go_component cellular_component|GO:0005575||ND  go_process RNA interference, production of ta-siRNAs|GO:0010267|17397509|TAS  go_function molecular_function|GO:0003674||ND  product SDE5 (silencing defective 5)  note silencing defective 5 (SDE5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: RNA interference, production of ta-siRNAs; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1771 (InterPro:IPR013899); BEST Arabidopsis thaliana protein match is: PRLI-interacting factor, putative (TAIR:AT5G58720.1); Has 49 Blast hits to 49 proteins in 16 species: Archae - 0; Bacteria - 4; Metazoa - 11; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT3G15390.1p  transcript_id AT3G15390.1  protein_id AT3G15390.1p  transcript_id AT3G15390.1  
At3g15395	chr3:005201014	0.0	W/5201014-5201089,5201204-5201307	AT3G15395.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 15 Blast hits to 15 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G15395.1p  transcript_id AT3G15395.1  protein_id AT3G15395.1p  transcript_id AT3G15395.1  
At3g15395	chr3:005201014	0.0	W/5201014-5201089,5201204-5201307	AT3G15395.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 15 Blast hits to 15 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G15395.2p  transcript_id AT3G15395.2  protein_id AT3G15395.2p  transcript_id AT3G15395.2  
At3g15395	chr3:005201014	0.0	W/5201014-5201089,5201204-5201307	AT3G15395.3  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 15 Blast hits to 15 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G15395.3p  transcript_id AT3G15395.3  protein_id AT3G15395.3p  transcript_id AT3G15395.3  
At3g15395	chr3:005201014	0.0	W/5201014-5201089,5201204-5201307	AT3G15395.4  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 15 Blast hits to 15 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G15395.4p  transcript_id AT3G15395.4  protein_id AT3G15395.4p  transcript_id AT3G15395.4  
At3g15400	chr3:005201678	0.0	W/5201678-5202928	AT3G15400.1  CDS  gene_syn ARABIDOPSIS THALIANA ANTHER 20, ATA20  gene ATA20  function Encodes a protein with novel repeat sequences and a glycine-rich domain which has a 53% identity to GRP1, a petunia glycine-rich cell wall protein.  go_component plant-type cell wall|GO:0009505|9687065|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ATA20  note ATA20; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; Has 77171 Blast hits to 19711 proteins in 1301 species: Archae - 97; Bacteria - 27924; Metazoa - 20901; Fungi - 4266; Plants - 6864; Viruses - 885; Other Eukaryotes - 16234 (source: NCBI BLink).  protein_id AT3G15400.1p  transcript_id AT3G15400.1  protein_id AT3G15400.1p  transcript_id AT3G15400.1  
At3g15400	chr3:005202014	0.0	W/5202014-5202928	AT3G15400.2  CDS  gene_syn ARABIDOPSIS THALIANA ANTHER 20, ATA20  gene ATA20  function Encodes a protein with novel repeat sequences and a glycine-rich domain which has a 53% identity to GRP1, a petunia glycine-rich cell wall protein.  go_component plant-type cell wall|GO:0009505|9687065|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ATA20  note ATA20; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; Has 76573 Blast hits to 19205 proteins in 1262 species: Archae - 94; Bacteria - 27739; Metazoa - 20739; Fungi - 4203; Plants - 6781; Viruses - 883; Other Eukaryotes - 16134 (source: NCBI BLink).  protein_id AT3G15400.2p  transcript_id AT3G15400.2  protein_id AT3G15400.2p  transcript_id AT3G15400.2  
At3g15410	chr3:005203380	0.0	W/5203380-5203444,5203708-5203771,5203862-5203998,5204086-5204172,5204264-5204339,5204426-5204500,5204619-5204688,5204771-5204848,5204960-5205020,5205125-5205203,5205331-5205421,5205535-5205595,5205700-5205767,5205843-5205913,5206011-5206148,5206266-5206370,5206457-5206581,5206662-5206758,5206909-5206983,5207061-5207116,5207204-5207279	AT3G15410.1  CDS  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT2G17440.1); Has 82745 Blast hits to 26624 proteins in 944 species: Archae - 59; Bacteria - 8263; Metazoa - 44286; Fungi - 2097; Plants - 22427; Viruses - 19; Other Eukaryotes - 5594 (source: NCBI BLink).  protein_id AT3G15410.1p  transcript_id AT3G15410.1  protein_id AT3G15410.1p  transcript_id AT3G15410.1  
At3g15420	chr3:005208206	0.0	C/5208206-5208289,5208080-5208130,5207948-5207999,5207704-5207840	AT3G15420.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80745.1); Has 17 Blast hits to 17 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G15420.1p  transcript_id AT3G15420.1  protein_id AT3G15420.1p  transcript_id AT3G15420.1  
At3g15430	chr3:005209408	0.0	W/5209408-5209746,5209874-5210083,5210169-5210279,5210365-5210733,5210824-5210931,5211233-5211562	AT3G15430.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function Ran GTPase binding|GO:0008536||ISS  product regulator of chromosome condensation (RCC1) family protein  note regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: Ran GTPase binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: regulator of chromosome condensation (RCC1) family protein (TAIR:AT3G26100.2); Has 13355 Blast hits to 4140 proteins in 287 species: Archae - 48; Bacteria - 1354; Metazoa - 5756; Fungi - 735; Plants - 1385; Viruses - 4; Other Eukaryotes - 4073 (source: NCBI BLink).  protein_id AT3G15430.1p  transcript_id AT3G15430.1  protein_id AT3G15430.1p  transcript_id AT3G15430.1  
At3g15430	chr3:005209408	0.0	W/5209408-5209746,5209874-5210083,5210169-5210279,5210365-5210733,5210824-5210931,5211233-5211562	AT3G15430.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function Ran GTPase binding|GO:0008536||ISS  product regulator of chromosome condensation (RCC1) family protein  note regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: Ran GTPase binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: regulator of chromosome condensation (RCC1) family protein (TAIR:AT3G26100.2); Has 13355 Blast hits to 4140 proteins in 287 species: Archae - 48; Bacteria - 1354; Metazoa - 5756; Fungi - 735; Plants - 1385; Viruses - 4; Other Eukaryotes - 4073 (source: NCBI BLink).  protein_id AT3G15430.2p  transcript_id AT3G15430.2  protein_id AT3G15430.2p  transcript_id AT3G15430.2  
At3g15440	chr3:005211923	0.0	C/5211923-5212354	AT3G15440.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G15740.1); Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G15440.1p  transcript_id AT3G15440.1  protein_id AT3G15440.1p  transcript_id AT3G15440.1  
At3g15450	chr3:005213050	0.0	W/5213050-5213255,5213346-5213643,5213808-5213864	AT3G15450.3  CDS  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27450.1); Has 132 Blast hits to 132 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G15450.3p  transcript_id AT3G15450.3  protein_id AT3G15450.3p  transcript_id AT3G15450.3  
At3g15450	chr3:005213050	0.0	W/5213050-5213255,5213346-5213710,5213808-5213998	AT3G15450.1  CDS  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27450.1); Has 270 Blast hits to 270 proteins in 60 species: Archae - 0; Bacteria - 23; Metazoa - 2; Fungi - 2; Plants - 227; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT3G15450.1p  transcript_id AT3G15450.1  protein_id AT3G15450.1p  transcript_id AT3G15450.1  
At3g15450	chr3:005213050	0.0	W/5213050-5213255,5213346-5213766	AT3G15450.2  CDS  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27450.1); Has 166 Blast hits to 166 proteins in 33 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 152; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT3G15450.2p  transcript_id AT3G15450.2  protein_id AT3G15450.2p  transcript_id AT3G15450.2  
At3g15460	chr3:005215992	0.0	C/5215992-5216188,5215767-5215908,5215309-5215387,5215049-5215173,5214850-5214951,5214694-5214762,5214508-5214606,5214279-5214413	AT3G15460.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product brix domain-containing protein  note brix domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); BEST Arabidopsis thaliana protein match is: brix domain-containing protein (TAIR:AT1G52930.1); Has 299 Blast hits to 299 proteins in 145 species: Archae - 0; Bacteria - 0; Metazoa - 109; Fungi - 88; Plants - 33; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT3G15460.1p  transcript_id AT3G15460.1  protein_id AT3G15460.1p  transcript_id AT3G15460.1  
At3g15470	chr3:005218294	0.0	C/5218294-5219868,5218105-5218195,5217855-5218012,5217692-5217743,5217520-5217602,5217325-5217418,5216630-5217228	AT3G15470.1  CDS  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_process signal transduction|GO:0007165||ISS  go_function signal transducer activity|GO:0004871||ISS  product WD-40 repeat family protein  note WD-40 repeat family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: signal transduction; LOCATED IN: heterotrimeric G-protein complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein (TAIR:AT5G54200.1); Has 26859 Blast hits to 16455 proteins in 561 species: Archae - 48; Bacteria - 3965; Metazoa - 11807; Fungi - 5031; Plants - 2311; Viruses - 6; Other Eukaryotes - 3691 (source: NCBI BLink).  protein_id AT3G15470.1p  transcript_id AT3G15470.1  protein_id AT3G15470.1p  transcript_id AT3G15470.1  
At3g15480	chr3:005227577	0.0	C/5227577-5227666,5226809-5227014,5226489-5226720	AT3G15480.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52910.1); Has 159 Blast hits to 159 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 159; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G15480.1p  transcript_id AT3G15480.1  protein_id AT3G15480.1p  transcript_id AT3G15480.1  
At3g15490	chr3:005229785	0.0	W/5229785-5229856,5229992-5230095,5230187-5230646	AT3G15490.1  CDS  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14830.1); Has 186 Blast hits to 186 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 28; Plants - 141; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT3G15490.1p  transcript_id AT3G15490.1  protein_id AT3G15490.1p  transcript_id AT3G15490.1  
At3g15500	chr3:005234731	0.0	W/5234731-5234911,5235005-5235273,5235379-5235882	AT3G15500.1  CDS  gene_syn ANAC055, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 3, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 55, ATNAC3, NAC-DOMAIN ENCODING GENE  gene ANAC055  function Encodes an ATAF-like NAC-domain transcription factor that doesn t contain C-terminal sequences shared by CUC1, CUC2 and NAM. Note: this protein (AtNAC3) is not to be confused with the protein encoded by locus AT3G29035, which, on occasion, has also been referred to as AtNAC3.  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_process response to water deprivation|GO:0009414|15319476|IEP  go_process response to water deprivation|GO:0009414|15319476|IMP  go_process response to abscisic acid stimulus|GO:0009737|15319476|IEP  go_process jasmonic acid mediated signaling pathway|GO:0009867|11118137|TAS  go_process hyperosmotic salinity response|GO:0042538|15319476|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|15319476|IDA  product ANAC055 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 55); transcription factor  note ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 55 (ANAC055); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, response to water deprivation, hyperosmotic salinity response, response to abscisic acid stimulus, jasmonic acid mediated signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC019 (Arabidopsis NAC domain containing protein 19); transcription factor (TAIR:AT1G52890.1); Has 1644 Blast hits to 1641 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1644; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G15500.1p  transcript_id AT3G15500.1  protein_id AT3G15500.1p  transcript_id AT3G15500.1  
At3g15510	chr3:005243696	0.0	W/5243696-5243885,5244048-5244355,5244441-5245037	AT3G15510.1  CDS  gene_syn ANAC056, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 2, ARABIDOPSIS THALIANA NAC DOMAIN CONTAINING PROTEIN 2, ATNAC2, NAC-REGULATED SEED MORPHOLOGY 1, NARS1  gene ATNAC2  function Note of caution: not to be confused with another protein (AtNAC6 locus AT5G39610) which on occasion has also been referred to as AtNAC2.  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||NAS  product ATNAC2 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 2); transcription factor  note ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 2 (ATNAC2); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAM (NO APICAL MERISTEM); transcription factor (TAIR:AT1G52880.1); Has 1644 Blast hits to 1641 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1642; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G15510.1p  transcript_id AT3G15510.1  protein_id AT3G15510.1p  transcript_id AT3G15510.1  
At3g15518	chr3:005249221	0.0	W/5249221-5249541	AT3G15518.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G15518.1p  transcript_id AT3G15518.1  protein_id AT3G15518.1p  transcript_id AT3G15518.1  
At3g15520	chr3:005252259	0.0	C/5252259-5252432,5251847-5252107,5251670-5251759,5251384-5251479,5251067-5251174,5250928-5250977,5250745-5250847,5250580-5250633,5250299-5250457,5250101-5250223,5249965-5250014,5249739-5249871	AT3G15520.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||IEA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543||ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product peptidyl-prolyl cis-trans isomerase TLP38, chloroplast / thylakoid lumen PPIase of 38 kDa / cyclophilin / rotamase  note peptidyl-prolyl cis-trans isomerase TLP38, chloroplast / thylakoid lumen PPIase of 38 kDa / cyclophilin / rotamase; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: CYP38 (cyclophilin 38); peptidyl-prolyl cis-trans isomerase (TAIR:AT3G01480.1); Has 562 Blast hits to 560 proteins in 100 species: Archae - 1; Bacteria - 271; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 238 (source: NCBI BLink).  protein_id AT3G15520.1p  transcript_id AT3G15520.1  protein_id AT3G15520.1p  transcript_id AT3G15520.1  
At3g15530	chr3:005253707	0.0	C/5253707-5254193,5253253-5253632	AT3G15530.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  product methyltransferase  note methyltransferase; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: methyltransferase (TAIR:AT5G54400.1); Has 1872 Blast hits to 1872 proteins in 644 species: Archae - 84; Bacteria - 1456; Metazoa - 9; Fungi - 98; Plants - 47; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink).  protein_id AT3G15530.1p  transcript_id AT3G15530.1  protein_id AT3G15530.1p  transcript_id AT3G15530.1  
At3g15530	chr3:005253707	0.0	C/5253707-5254193,5253253-5253632	AT3G15530.2  CDS  go_process metabolic process|GO:0008152||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  product methyltransferase  note methyltransferase; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: methyltransferase (TAIR:AT5G54400.1); Has 1872 Blast hits to 1872 proteins in 644 species: Archae - 84; Bacteria - 1456; Metazoa - 9; Fungi - 98; Plants - 47; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink).  protein_id AT3G15530.2p  transcript_id AT3G15530.2  protein_id AT3G15530.2p  transcript_id AT3G15530.2  
At3g15534	chr3:005258876	0.0	W/5258876-5259082	AT3G15534.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52855.1); Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G15534.1p  transcript_id AT3G15534.1  protein_id AT3G15534.1p  transcript_id AT3G15534.1  
At3g15536	chr3:005260723	0.0	W/5260723-5261322	AT3G15536.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G15536.1  
At3g15540	chr3:005264100	0.0	W/5264100-5264508,5265102-5265195,5265288-5265378	AT3G15540.1  CDS  gene_syn IAA19, INDOLE-3-ACETIC ACID INDUCIBLE 19, MJK13.22, MSG2  gene IAA19  function IAA induced protein 19  go_component nucleus|GO:0005634||IEA  go_process gravitropism|GO:0009630||NAS  go_process phototropism|GO:0009638||NAS  go_process response to auxin stimulus|GO:0009733|12036262|TAS  go_process response to auxin stimulus|GO:0009733||NAS  go_process response to brassinosteroid stimulus|GO:0009741|16367964|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19); transcription factor  note INDOLE-3-ACETIC ACID INDUCIBLE 19 (IAA19); FUNCTIONS IN: transcription factor activity; INVOLVED IN: phototropism, response to auxin stimulus, gravitropism, response to brassinosteroid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA6 (INDOLE-3-ACETIC ACID 6); transcription factor (TAIR:AT1G52830.1); Has 1102 Blast hits to 1102 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1101; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G15540.1p  transcript_id AT3G15540.1  protein_id AT3G15540.1p  transcript_id AT3G15540.1  
At3g15548	chr3:005267063	0.0	W/5267063-5267164	AT3G15548.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G15548.1p  transcript_id AT3G15548.1  protein_id AT3G15548.1p  transcript_id AT3G15548.1  
At3g15550	chr3:005267351	0.0	W/5267351-5267509,5267639-5267754,5267835-5267953,5268049-5268211,5268295-5268503,5268584-5268902,5268991-5270095	AT3G15550.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 32 Blast hits to 31 proteins in 6 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G15550.1p  transcript_id AT3G15550.1  protein_id AT3G15550.1p  transcript_id AT3G15550.1  
At3g15570	chr3:005270930	0.0	C/5270930-5271700,5270267-5270854	AT3G15570.1  CDS  go_process response to light stimulus|GO:0009416||IEA  go_function signal transducer activity|GO:0004871||IEA  go_component cellular_component|GO:0005575||ND  go_process response to light stimulus|GO:0009416||ISS  go_function signal transducer activity|GO:0004871||ISS  product phototropic-responsive NPH3 family protein  note phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249); BEST Arabidopsis thaliana protein match is: phototropic-responsive NPH3 family protein (TAIR:AT1G52770.1); Has 410 Blast hits to 409 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 410; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G15570.1p  transcript_id AT3G15570.1  protein_id AT3G15570.1p  transcript_id AT3G15570.1  
At3g15578	chr3:005273691	0.0	W/5273691-5273873	AT3G15578.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G15578.1p  transcript_id AT3G15578.1  protein_id AT3G15578.1p  transcript_id AT3G15578.1  
At3g15580	chr3:005274970	0.0	C/5274970-5275000,5274820-5274875,5274607-5274659,5274252-5274370,5274075-5274163	AT3G15580.1  CDS  gene_syn APG8H, ATG8I, AUTOPHAGY 8H, AUTOPHAGY 8I  gene APG8H  function Encodes APG8, a component of autophagy conjugation pathway. Delivered to the lumens of vacuole under nitrogen-starvation condition.  go_component cytoplasm|GO:0005737||NAS  go_component vacuolar lumen|GO:0005775||NAS  go_process autophagy|GO:0006914|12070171|ISS  go_process autophagy|GO:0006914||ISS  go_function microtubule binding|GO:0008017||ISS  go_function Atg8 ligase activity|GO:0019776|12070171|ISS  go_function APG8 activating enzyme activity|GO:0019779|12070171|ISS  go_function APG8-specific protease activity|GO:0019786|12070171|ISS  product APG8H (AUTOPHAGY 8H); APG8 activating enzyme/ APG8-specific protease/ Atg8 ligase/ microtubule binding  note AUTOPHAGY 8H (APG8H); FUNCTIONS IN: microtubule binding, APG8-specific protease activity, APG8 activating enzyme activity, Atg8 ligase activity; INVOLVED IN: autophagy; LOCATED IN: vacuolar lumen, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: ATG8H (autophagy 8h); microtubule binding (TAIR:AT3G06420.1); Has 1141 Blast hits to 1139 proteins in 200 species: Archae - 0; Bacteria - 0; Metazoa - 574; Fungi - 124; Plants - 171; Viruses - 3; Other Eukaryotes - 269 (source: NCBI BLink).  protein_id AT3G15580.1p  transcript_id AT3G15580.1  protein_id AT3G15580.1p  transcript_id AT3G15580.1  
At3g15585	chr3:005275149	0.0	W/5275149-5275221	AT3G15585.1  tRNA  gene_syn 60524.TRNA-PHE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Phe (anticodon: GAA)  transcript_id AT3G15585.1  
At3g15590	chr3:005277630	0.0	C/5277630-5277658,5276919-5277471,5275568-5276818	AT3G15590.1  CDS  go_component mitochondrion|GO:0005739|15276431|IDA  go_function DNA binding|GO:0003677||ISS  product DNA-binding protein, putative  note DNA-binding protein, putative; FUNCTIONS IN: DNA binding; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT1G80270.3); Has 4141 Blast hits to 2233 proteins in 120 species: Archae - 0; Bacteria - 9; Metazoa - 154; Fungi - 32; Plants - 3825; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).  protein_id AT3G15590.1p  transcript_id AT3G15590.1  protein_id AT3G15590.1p  transcript_id AT3G15590.1  
At3g15600	chr3:005279432	0.0	W/5279432-5281417	AT3G15600.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G07770.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G43530.1); similar to hypothetical protein B14911_03489 [Bacillus sp. NRRL B-14911] (GB:ZP_01168655.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048)  
At3g15602	chr3:005283446	0.0	C/5283446-5285767	AT3G15602.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 9.9e-40 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At3g15604	chr3:005287380	0.0	C/5287380-5287544	AT3G15604.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G15604.1p  transcript_id AT3G15604.1  protein_id AT3G15604.1p  transcript_id AT3G15604.1  
At3g15605	chr3:005288774	0.0	W/5288774-5288933,5289040-5289222,5289315-5289595,5289780-5289806,5290032-5290124,5290287-5290365,5290474-5290564,5290662-5290941	AT3G15605.2  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504); BEST Arabidopsis thaliana protein match is: DNA binding / nucleic acid binding (TAIR:AT5G11470.1); Has 21 Blast hits to 19 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G15605.2p  transcript_id AT3G15605.2  protein_id AT3G15605.2p  transcript_id AT3G15605.2  
At3g15605	chr3:005288774	0.0	W/5288774-5288933,5289040-5289222,5289315-5289595,5289780-5289806,5290032-5290124,5290287-5290365,5290474-5290564,5290662-5290941	AT3G15605.3  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504); BEST Arabidopsis thaliana protein match is: DNA binding / nucleic acid binding (TAIR:AT5G11470.1); Has 21 Blast hits to 19 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G15605.3p  transcript_id AT3G15605.3  protein_id AT3G15605.3p  transcript_id AT3G15605.3  
At3g15605	chr3:005288774	0.0	W/5288774-5288933,5289040-5289222,5289315-5289595,5289780-5289806,5290032-5290124,5290287-5290371,5290474-5290564,5290662-5290941	AT3G15605.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: DNA binding / nucleic acid binding (TAIR:AT5G11470.1); Has 21 Blast hits to 19 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G15605.1p  transcript_id AT3G15605.1  protein_id AT3G15605.1p  transcript_id AT3G15605.1  
At3g15610	chr3:005292679	0.0	C/5292679-5292796,5292392-5292527,5292201-5292282,5291874-5292049,5291640-5291777,5291410-5291549,5291076-5291311	AT3G15610.1  CDS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT1G52730.2); Has 32268 Blast hits to 17031 proteins in 599 species: Archae - 64; Bacteria - 5060; Metazoa - 13300; Fungi - 6792; Plants - 2625; Viruses - 0; Other Eukaryotes - 4427 (source: NCBI BLink).  protein_id AT3G15610.1p  transcript_id AT3G15610.1  protein_id AT3G15610.1p  transcript_id AT3G15610.1  
At3g15620	chr3:005296189	0.0	C/5296189-5296548,5296017-5296088,5295825-5295905,5295554-5295733,5295403-5295474,5295096-5295182,5294912-5295010,5294752-5294835,5294570-5294656,5294417-5294488,5294201-5294344	AT3G15620.2  CDS  gene_syn 6-4 PHOTOLYASE, UV REPAIR DEFECTIVE 3, UVR3  gene UVR3  function Required for photorepair of 6-4 photoproducts in Arabidopsis thaliana.  go_process pyrimidine dimer repair|GO:0006290|9750104|IMP  go_process response to UV|GO:0009411|9750104|IMP  go_function DNA (6-4) photolyase activity|GO:0003914|9421527|IDA  go_function DNA (6-4) photolyase activity|GO:0003914|9421527|ISS  product UVR3 (UV REPAIR DEFECTIVE 3); DNA (6-4) photolyase  note UV REPAIR DEFECTIVE 3 (UVR3); FUNCTIONS IN: DNA (6-4) photolyase activity; INVOLVED IN: response to UV, pyrimidine dimer repair; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101); BEST Arabidopsis thaliana protein match is: CRY3 (cryptochrome 3); DNA binding / DNA photolyase/ FMN binding (TAIR:AT5G24850.1); Has 6628 Blast hits to 6615 proteins in 878 species: Archae - 61; Bacteria - 1783; Metazoa - 353; Fungi - 100; Plants - 499; Viruses - 0; Other Eukaryotes - 3832 (source: NCBI BLink).  protein_id AT3G15620.2p  transcript_id AT3G15620.2  protein_id AT3G15620.2p  transcript_id AT3G15620.2  
At3g15620	chr3:005296189	0.0	C/5296189-5296548,5296017-5296088,5295825-5295905,5295554-5295733,5295403-5295474,5295096-5295182,5294912-5295010,5294752-5294835,5294570-5294656,5294417-5294488,5294231-5294344,5294009-5294096,5293832-5293927,5293475-5293653	AT3G15620.1  CDS  gene_syn 6-4 PHOTOLYASE, UV REPAIR DEFECTIVE 3, UVR3  gene UVR3  function Required for photorepair of 6-4 photoproducts in Arabidopsis thaliana.  go_process pyrimidine dimer repair|GO:0006290|9750104|IMP  go_process response to UV|GO:0009411|9750104|IMP  go_function DNA (6-4) photolyase activity|GO:0003914|9421527|IDA  go_function DNA (6-4) photolyase activity|GO:0003914|9421527|ISS  product UVR3 (UV REPAIR DEFECTIVE 3); DNA (6-4) photolyase  note UV REPAIR DEFECTIVE 3 (UVR3); FUNCTIONS IN: DNA (6-4) photolyase activity; INVOLVED IN: response to UV, pyrimidine dimer repair; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101); BEST Arabidopsis thaliana protein match is: CRY2 (CRYPTOCHROME 2); blue light photoreceptor/ protein homodimerization (TAIR:AT1G04400.2); Has 7273 Blast hits to 7251 proteins in 889 species: Archae - 61; Bacteria - 1804; Metazoa - 358; Fungi - 100; Plants - 568; Viruses - 0; Other Eukaryotes - 4382 (source: NCBI BLink).  protein_id AT3G15620.1p  transcript_id AT3G15620.1  protein_id AT3G15620.1p  transcript_id AT3G15620.1  
At3g15630	chr3:005297188	0.0	C/5297188-5297511	AT3G15630.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52720.1); Has 35 Blast hits to 35 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G15630.1p  transcript_id AT3G15630.1  protein_id AT3G15630.1p  transcript_id AT3G15630.1  
At3g15640	chr3:005299273	0.0	W/5299273-5299450,5299667-5299752,5299947-5299997,5300869-5300935,5301062-5301141,5301303-5301371	AT3G15640.1  CDS  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_function metal ion binding|GO:0046872|12606038|IDA  go_component mitochondrion|GO:0005739|12606038|IDA  go_component mitochondrial envelope|GO:0005740||ISS  go_function cytochrome-c oxidase activity|GO:0004129||ISS  product cytochrome c oxidase family protein  note cytochrome c oxidase family protein; FUNCTIONS IN: cytochrome-c oxidase activity, metal ion binding; LOCATED IN: mitochondrial envelope, mitochondrion, chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase, subunit Vb (InterPro:IPR002124); BEST Arabidopsis thaliana protein match is: cytochrome c oxidase family protein (TAIR:AT1G80230.1); Has 343 Blast hits to 343 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 191; Fungi - 63; Plants - 56; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT3G15640.1p  transcript_id AT3G15640.1  protein_id AT3G15640.1p  transcript_id AT3G15640.1  
At3g15640	chr3:005299273	0.0	W/5299273-5299450,5299670-5299752,5299947-5299997,5300869-5300935,5301062-5301141,5301303-5301371	AT3G15640.2  CDS  go_component mitochondrion|GO:0005739|12606038|IDA  go_component mitochondrial envelope|GO:0005740||ISS  go_function cytochrome-c oxidase activity|GO:0004129||ISS  product cytochrome c oxidase family protein  note cytochrome c oxidase family protein; FUNCTIONS IN: cytochrome-c oxidase activity; LOCATED IN: mitochondrial envelope, mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase, subunit Vb (InterPro:IPR002124); BEST Arabidopsis thaliana protein match is: cytochrome c oxidase family protein (TAIR:AT1G80230.1); Has 341 Blast hits to 341 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 189; Fungi - 63; Plants - 56; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT3G15640.2p  transcript_id AT3G15640.2  protein_id AT3G15640.2p  transcript_id AT3G15640.2  
At3g15650	chr3:005306006	0.0	W/5306006-5306036,5306149-5306260,5306581-5306617,5306713-5306782,5306871-5306975,5307085-5307235,5307318-5307400,5307499-5307592,5307680-5307764	AT3G15650.1  CDS  go_function hydrolase activity|GO:0016787||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product phospholipase/carboxylesterase family protein  note phospholipase/carboxylesterase family protein; FUNCTIONS IN: hydrolase activity, carboxylesterase activity; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase/carboxylesterase (InterPro:IPR003140); BEST Arabidopsis thaliana protein match is: phospholipase/carboxylesterase family protein (TAIR:AT1G52700.1); Has 1540 Blast hits to 1531 proteins in 446 species: Archae - 2; Bacteria - 580; Metazoa - 300; Fungi - 165; Plants - 110; Viruses - 0; Other Eukaryotes - 383 (source: NCBI BLink).  protein_id AT3G15650.1p  transcript_id AT3G15650.1  protein_id AT3G15650.1p  transcript_id AT3G15650.1  
At3g15660	chr3:005309312	0.0	C/5309312-5309383,5308894-5309034,5308708-5308807,5308529-5308595,5308276-5308354,5308134-5308184	AT3G15660.1  CDS  gene_syn A. THALIANA GLUTAREDOXIN 4, ATGRX4, GLUTAREDOXIN 4, GRX4  gene GRX4  go_process cell redox homeostasis|GO:0045454||IEA  go_function metal ion binding|GO:0046872|12606038|IDA  go_component mitochondrion|GO:0005739|12606038|IDA  go_component mitochondrion|GO:0005739|12954611|IDA  product GRX4 (GLUTAREDOXIN 4); metal ion binding  note GLUTAREDOXIN 4 (GRX4); FUNCTIONS IN: metal ion binding; INVOLVED IN: cell redox homeostasis; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336), Glutaredoxin-related protein (InterPro:IPR004480); BEST Arabidopsis thaliana protein match is: thioredoxin family protein (TAIR:AT4G04950.1); Has 4103 Blast hits to 3965 proteins in 839 species: Archae - 12; Bacteria - 1387; Metazoa - 395; Fungi - 212; Plants - 231; Viruses - 0; Other Eukaryotes - 1866 (source: NCBI BLink).  protein_id AT3G15660.1p  transcript_id AT3G15660.1  protein_id AT3G15660.1p  transcript_id AT3G15660.1  
At3g15660	chr3:005309312	0.0	C/5309312-5309383,5308894-5309034,5308708-5308807,5308529-5308595,5308276-5308354,5308134-5308184	AT3G15660.2  CDS  gene_syn A. THALIANA GLUTAREDOXIN 4, ATGRX4, GLUTAREDOXIN 4, GRX4  gene GRX4  go_process cell redox homeostasis|GO:0045454||IEA  go_function metal ion binding|GO:0046872|12606038|IDA  go_component mitochondrion|GO:0005739|12606038|IDA  go_component mitochondrion|GO:0005739|12954611|IDA  product GRX4 (GLUTAREDOXIN 4); metal ion binding  note GLUTAREDOXIN 4 (GRX4); FUNCTIONS IN: metal ion binding; INVOLVED IN: cell redox homeostasis; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336), Glutaredoxin-related protein (InterPro:IPR004480); BEST Arabidopsis thaliana protein match is: thioredoxin family protein (TAIR:AT4G04950.1); Has 4103 Blast hits to 3965 proteins in 839 species: Archae - 12; Bacteria - 1387; Metazoa - 395; Fungi - 212; Plants - 231; Viruses - 0; Other Eukaryotes - 1866 (source: NCBI BLink).  protein_id AT3G15660.2p  transcript_id AT3G15660.2  protein_id AT3G15660.2p  transcript_id AT3G15660.2  
At3g15670	chr3:005310848	0.0	C/5310848-5310901,5310141-5310764	AT3G15670.1  CDS  go_component nucleus|GO:0005634|14617066|IDA  go_process embryonic development ending in seed dormancy|GO:0009793||ISS  go_function molecular_function|GO:0003674||ND  product late embryogenesis abundant protein, putative / LEA protein, putative  note late embryogenesis abundant protein, putative / LEA protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: nucleus; EXPRESSED DURING: dry seed stage; BEST Arabidopsis thaliana protein match is: late embryogenesis abundant protein, putative / LEA protein, putative (TAIR:AT1G52690.2); Has 9791 Blast hits to 5043 proteins in 926 species: Archae - 24; Bacteria - 3928; Metazoa - 1452; Fungi - 554; Plants - 1082; Viruses - 109; Other Eukaryotes - 2642 (source: NCBI BLink).  protein_id AT3G15670.1p  transcript_id AT3G15670.1  protein_id AT3G15670.1p  transcript_id AT3G15670.1  
At3g15680	chr3:005315437	0.0	W/5315437-5315840,5315958-5316048	AT3G15680.1  CDS  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function binding|GO:0005488||ISS  product zinc finger (Ran-binding) family protein  note zinc finger (Ran-binding) family protein; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: zinc finger (Ran-binding) family protein (TAIR:AT5G25490.1); Has 1423 Blast hits to 760 proteins in 123 species: Archae - 0; Bacteria - 2; Metazoa - 924; Fungi - 86; Plants - 218; Viruses - 0; Other Eukaryotes - 193 (source: NCBI BLink).  protein_id AT3G15680.1p  transcript_id AT3G15680.1  protein_id AT3G15680.1p  transcript_id AT3G15680.1  
At3g15690	chr3:005317108	0.0	W/5317108-5317117,5317766-5317957,5318126-5318202,5318403-5318462,5318587-5318790,5318906-5318968,5319061-5319129,5319231-5319276,5319365-5319435	AT3G15690.2  CDS  go_component chloroplast|GO:0009507|18431481|IDA  product biotin carboxyl carrier protein of acetyl-CoA carboxylase-related  note biotin carboxyl carrier protein of acetyl-CoA carboxylase-related; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: biotin/lipoyl attachment domain-containing protein (TAIR:AT1G52670.1); Has 1999 Blast hits to 1999 proteins in 727 species: Archae - 2; Bacteria - 1353; Metazoa - 8; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 561 (source: NCBI BLink).  protein_id AT3G15690.2p  transcript_id AT3G15690.2  protein_id AT3G15690.2p  transcript_id AT3G15690.2  
At3g15690	chr3:005317108	0.0	W/5317108-5317117,5317766-5317957,5318126-5318202,5318403-5318462,5318587-5318790,5318906-5318968,5319061-5319129,5319231-5319280,5319365-5319383	AT3G15690.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  product biotin carboxyl carrier protein of acetyl-CoA carboxylase-related  note biotin carboxyl carrier protein of acetyl-CoA carboxylase-related; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Single hybrid motif (InterPro:IPR011053); BEST Arabidopsis thaliana protein match is: biotin/lipoyl attachment domain-containing protein (TAIR:AT1G52670.1); Has 1218 Blast hits to 1218 proteins in 488 species: Archae - 0; Bacteria - 897; Metazoa - 6; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 246 (source: NCBI BLink).  protein_id AT3G15690.1p  transcript_id AT3G15690.1  protein_id AT3G15690.1p  transcript_id AT3G15690.1  
At3g15700	chr3:005321602	0.0	C/5321602-5322376,5321136-5321488	AT3G15700.1  CDS  go_process apoptosis|GO:0006915||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process defense response|GO:0006952||ISS  product disease resistance protein, putative  note disease resistance protein, putative; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182); BEST Arabidopsis thaliana protein match is: ATP binding (TAIR:AT1G52660.1); Has 5583 Blast hits to 5540 proteins in 215 species: Archae - 5; Bacteria - 23; Metazoa - 0; Fungi - 0; Plants - 5554; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G15700.1p  transcript_id AT3G15700.1  protein_id AT3G15700.1p  transcript_id AT3G15700.1  
At3g15710	chr3:005324707	0.0	C/5324707-5324785,5324457-5324569,5324307-5324378,5324183-5324218,5324037-5324082,5323874-5323961,5323713-5323770,5323564-5323614	AT3G15710.1  CDS  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process signal peptide processing|GO:0006465||IEA  go_process proteolysis|GO:0006508||IEA  go_function peptidase activity|GO:0008233||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component membrane|GO:0016020||ISS  go_process proteolysis|GO:0006508||ISS  go_function peptidase activity|GO:0008233||ISS  product signal peptidase, putative  note signal peptidase, putative; FUNCTIONS IN: peptidase activity; INVOLVED IN: proteolysis, signal peptide processing; LOCATED IN: endoplasmic reticulum, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S24, S26A and S26B, C-terminal (InterPro:IPR011056), Peptidase S26B, eukaryotic signal peptidase (InterPro:IPR001733), Peptidase S24, S26A, S26B and S26C (InterPro:IPR015927); BEST Arabidopsis thaliana protein match is: signal peptidase, putative (TAIR:AT1G52600.1); Has 543 Blast hits to 543 proteins in 218 species: Archae - 61; Bacteria - 66; Metazoa - 190; Fungi - 97; Plants - 49; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT3G15710.1p  transcript_id AT3G15710.1  protein_id AT3G15710.1p  transcript_id AT3G15710.1  
At3g15720	chr3:005327335	0.0	C/5327335-5327457,5327105-5327239,5326855-5327013,5326546-5326753,5326254-5326335,5326060-5326168,5325838-5325960,5325329-5325760	AT3G15720.1  CDS  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_function polygalacturonase activity|GO:0004650||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process carbohydrate metabolic process|GO:0005975||ISS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: response to cyclopentenone, carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, anchored to membrane, plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Parallel beta-helix repeat (InterPro:IPR006626), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT5G27530.1); Has 2739 Blast hits to 2729 proteins in 380 species: Archae - 2; Bacteria - 578; Metazoa - 8; Fungi - 1167; Plants - 896; Viruses - 2; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT3G15720.1p  transcript_id AT3G15720.1  protein_id AT3G15720.1p  transcript_id AT3G15720.1  
At3g15720	chr3:005327615	0.0	C/5327615-5327617,5327335-5327451,5327105-5327239,5326855-5327013,5326546-5326744,5326254-5326335,5326060-5326168,5325838-5325960,5325329-5325760	AT3G15720.2  CDS  go_function polygalacturonase activity|GO:0004650||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process carbohydrate metabolic process|GO:0005975||ISS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: response to cyclopentenone, carbohydrate metabolic process; LOCATED IN: anchored to membrane, plant-type cell wall; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT5G27530.1); Has 2742 Blast hits to 2728 proteins in 381 species: Archae - 2; Bacteria - 582; Metazoa - 8; Fungi - 1167; Plants - 897; Viruses - 2; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT3G15720.2p  transcript_id AT3G15720.2  protein_id AT3G15720.2p  transcript_id AT3G15720.2  
At3g15730	chr3:005330835	0.0	W/5330835-5330930,5331054-5332956,5333041-5333474	AT3G15730.1  CDS  gene_syn PHOSPHOLIPASE D, PHOSPHOLIPASE D ALPHA 1, PLD, PLDALPHA1  gene PLDALPHA1  function Encodes phospholipase D alpha 1 (PLD alpha 1). Positive regulator of abscisic acid (ABA) mediated stomatal movements. PLD alpha 1 plays an important role in seed deterioration and aging in Arabidopsis.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component nucleus|GO:0005634|10198096|IDA  go_component mitochondrion|GO:0005739|10198096|IDA  go_component plasma membrane|GO:0005886|10198096|IDA  go_component membrane|GO:0016020|10198096|IDA  go_component clathrin-coated vesicle|GO:0030136|10198096|IDA  go_process fatty acid metabolic process|GO:0006631|11239826|TAS  go_process fatty acid metabolic process|GO:0006631|17565616|IMP  go_process positive regulation of abscisic acid mediated signaling|GO:0009789|16614222|IMP  go_process seed germination|GO:0009845|17565616|IMP  go_process regulation of stomatal movement|GO:0010119|16614222|IMP  go_function phospholipase D activity|GO:0004630|11500544|IMP  go_function phospholipase D activity|GO:0004630|9353280|IDA  go_function phospholipase D activity|GO:0004630||IMP  go_function phospholipase D activity|GO:0004630||ISS  product PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1); phospholipase D  note PHOSPHOLIPASE D ALPHA 1 (PLDALPHA1); FUNCTIONS IN: phospholipase D activity; INVOLVED IN: response to cadmium ion, positive regulation of abscisic acid mediated signaling, fatty acid metabolic process, regulation of stomatal movement, seed germination; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phospholipase D (InterPro:IPR015679), Phospholipase D, plant (InterPro:IPR011402), C2 calcium-dependent membrane targeting (InterPro:IPR000008), Phospholipase D/Transphosphatidylase (InterPro:IPR001736); BEST Arabidopsis thaliana protein match is: PLDALPHA2 (phosphlipase d alpha 2); phospholipase D (TAIR:AT1G52570.1); Has 1400 Blast hits to 1052 proteins in 290 species: Archae - 0; Bacteria - 403; Metazoa - 307; Fungi - 281; Plants - 323; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT3G15730.1p  transcript_id AT3G15730.1  protein_id AT3G15730.1p  transcript_id AT3G15730.1  
At3g15740	chr3:005333879	0.0	C/5333879-5334553	AT3G15740.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G14970.1); Has 3312 Blast hits to 3301 proteins in 181 species: Archae - 0; Bacteria - 6; Metazoa - 1258; Fungi - 235; Plants - 1262; Viruses - 4; Other Eukaryotes - 547 (source: NCBI BLink).  protein_id AT3G15740.1p  transcript_id AT3G15740.1  protein_id AT3G15740.1p  transcript_id AT3G15740.1  
At3g15750	chr3:005335256	0.0	W/5335256-5335285,5335488-5335589,5335665-5335786,5335878-5336184	AT3G15750.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34570.1); Has 94 Blast hits to 94 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 43; Fungi - 14; Plants - 32; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G15750.1p  transcript_id AT3G15750.1  protein_id AT3G15750.1p  transcript_id AT3G15750.1  
At3g15760	chr3:005337734	0.0	W/5337734-5337896,5337975-5338219	AT3G15760.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52565.1); Has 21 Blast hits to 21 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G15760.1p  transcript_id AT3G15760.1  protein_id AT3G15760.1p  transcript_id AT3G15760.1  
At3g15770	chr3:005340243	0.0	W/5340243-5340247,5340483-5340754,5340843-5340933,5341012-5341078,5341163-5341216	AT3G15770.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25360.1); Has 74 Blast hits to 74 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G15770.1p  transcript_id AT3G15770.1  protein_id AT3G15770.1p  transcript_id AT3G15770.1  
At3g15770	chr3:005340243	0.0	W/5340243-5340247,5340486-5340754,5340843-5340933,5341012-5341078,5341163-5341216	AT3G15770.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25360.1); Has 74 Blast hits to 74 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G15770.2p  transcript_id AT3G15770.2  protein_id AT3G15770.2p  transcript_id AT3G15770.2  
At3g15780	chr3:005341434	0.0	W/5341434-5341644,5342209-5342351	AT3G15780.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 13 Blast hits to 13 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G15780.1p  transcript_id AT3G15780.1  protein_id AT3G15780.1p  transcript_id AT3G15780.1  
At3g15790	chr3:005343209	0.0	W/5343209-5343271,5343685-5344386	AT3G15790.1  CDS  gene_syn MBD11, METHYL-CPG-BINDING DOMAIN 11  gene MBD11  function Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.  go_component nucleus|GO:0005634||IEA  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  go_function methyl-CpG binding|GO:0008327|12787239|ISS  product MBD11; DNA binding / methyl-CpG binding  note MBD11; FUNCTIONS IN: methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); BEST Arabidopsis thaliana protein match is: MBD10; DNA binding / methyl-CpG binding (TAIR:AT1G15340.1); Has 8662 Blast hits to 5303 proteins in 426 species: Archae - 10; Bacteria - 660; Metazoa - 3520; Fungi - 810; Plants - 392; Viruses - 97; Other Eukaryotes - 3173 (source: NCBI BLink).  protein_id AT3G15790.1p  transcript_id AT3G15790.1  protein_id AT3G15790.1p  transcript_id AT3G15790.1  
At3g15800	chr3:005345051	0.0	W/5345051-5345563,5345988-5346305,5346620-5346988	AT3G15800.1  CDS  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT2G26600.1); Has 1382 Blast hits to 1373 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1379; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G15800.1p  transcript_id AT3G15800.1  protein_id AT3G15800.1p  transcript_id AT3G15800.1  
At3g15810	chr3:005348912	0.0	C/5348912-5349178,5348054-5348449	AT3G15810.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80120.1); Has 208 Blast hits to 208 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 7; Plants - 201; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G15810.1p  transcript_id AT3G15810.1  protein_id AT3G15810.1p  transcript_id AT3G15810.1  
At3g15820	chr3:005351217	0.0	W/5351217-5351657,5352236-5352373,5353247-5353573	AT3G15820.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product phosphatidic acid phosphatase-related / PAP2-related  note phosphatidic acid phosphatase-related / PAP2-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: phosphatidic acid phosphatase-related / PAP2-related (TAIR:AT3G15830.1); Has 40 Blast hits to 40 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT3G15820.1p  transcript_id AT3G15820.1  protein_id AT3G15820.1p  transcript_id AT3G15820.1  
At3g15830	chr3:005354974	0.0	W/5354974-5355399,5355535-5355672,5356001-5356327	AT3G15830.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product phosphatidic acid phosphatase-related / PAP2-related  note phosphatidic acid phosphatase-related / PAP2-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: phosphatidic acid phosphatase-related / PAP2-related (TAIR:AT3G15820.1); Has 38 Blast hits to 38 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT3G15830.1p  transcript_id AT3G15830.1  protein_id AT3G15830.1p  transcript_id AT3G15830.1  
At3g15840	chr3:005357966	0.0	C/5357966-5358070,5357811-5357889,5357394-5357507,5357181-5357293,5356977-5357087,5356782-5356904	AT3G15840.4  CDS  gene_syn PIFI, post-illumination chlorophyll fluorescence increase  gene PIFI  function Encodes a chloroplast-targeted protein localized in the stroma that is a novel component essential for NDH-mediated non-photochemical reduction of the plastoquinone pool in chlororespiratory electron transport.  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast stroma|GO:0009570|17573537|IDA  go_process chlororespiration|GO:0010478|17573537|IMP  go_function molecular_function|GO:0003674||ND  product PIFI (post-illumination chlorophyll fluorescence increase)  note post-illumination chlorophyll fluorescence increase (PIFI); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: chlororespiration; LOCATED IN: thylakoid, chloroplast stroma, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 31 Blast hits to 31 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G15840.4p  transcript_id AT3G15840.4  protein_id AT3G15840.4p  transcript_id AT3G15840.4  
At3g15840	chr3:005358346	0.0	C/5358346-5358418,5358144-5358252,5357966-5358050,5357811-5357880,5357394-5357507,5357181-5357293,5356977-5357087,5356782-5356904	AT3G15840.2  CDS  gene_syn PIFI, post-illumination chlorophyll fluorescence increase  gene PIFI  function Encodes a chloroplast-targeted protein localized in the stroma that is a novel component essential for NDH-mediated non-photochemical reduction of the plastoquinone pool in chlororespiratory electron transport.  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast stroma|GO:0009570|17573537|IDA  go_process chlororespiration|GO:0010478|17573537|IMP  go_function molecular_function|GO:0003674||ND  product PIFI (post-illumination chlorophyll fluorescence increase)  note post-illumination chlorophyll fluorescence increase (PIFI); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: chlororespiration; LOCATED IN: thylakoid, chloroplast stroma, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 31 Blast hits to 31 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G15840.2p  transcript_id AT3G15840.2  protein_id AT3G15840.2p  transcript_id AT3G15840.2  
At3g15840	chr3:005358346	0.0	C/5358346-5358418,5358144-5358252,5357966-5358050,5357811-5357889,5357394-5357507,5357181-5357293,5356973-5357087,5356782-5356900	AT3G15840.3  CDS  gene_syn PIFI, post-illumination chlorophyll fluorescence increase  gene PIFI  function Encodes a chloroplast-targeted protein localized in the stroma that is a novel component essential for NDH-mediated non-photochemical reduction of the plastoquinone pool in chlororespiratory electron transport.  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast stroma|GO:0009570|17573537|IDA  go_process chlororespiration|GO:0010478|17573537|IMP  go_function molecular_function|GO:0003674||ND  product PIFI (post-illumination chlorophyll fluorescence increase)  note post-illumination chlorophyll fluorescence increase (PIFI); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: chlororespiration; LOCATED IN: thylakoid, chloroplast stroma, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G15840.3p  transcript_id AT3G15840.3  protein_id AT3G15840.3p  transcript_id AT3G15840.3  
At3g15840	chr3:005358346	0.0	C/5358346-5358418,5358144-5358252,5357966-5358050,5357811-5357889,5357394-5357507,5357181-5357293,5356977-5357087,5356782-5356904	AT3G15840.1  CDS  gene_syn PIFI, post-illumination chlorophyll fluorescence increase  gene PIFI  function Encodes a chloroplast-targeted protein localized in the stroma that is a novel component essential for NDH-mediated non-photochemical reduction of the plastoquinone pool in chlororespiratory electron transport.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast stroma|GO:0009570|17573537|IDA  go_process chlororespiration|GO:0010478|17573537|IMP  go_function molecular_function|GO:0003674||ND  product PIFI (post-illumination chlorophyll fluorescence increase)  note post-illumination chlorophyll fluorescence increase (PIFI); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: chlororespiration; LOCATED IN: thylakoid, chloroplast stroma, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 31 Blast hits to 31 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G15840.1p  transcript_id AT3G15840.1  protein_id AT3G15840.1p  transcript_id AT3G15840.1  
At3g15850	chr3:005359087	0.0	W/5359087-5359611,5359702-5359842,5359930-5360070,5360598-5360704,5360797-5360998	AT3G15850.1  CDS  gene_syn ADS3, FAD5, FADB, FATTY ACID DESATURASE 5, FATTY ACID DESATURASE B, JB67  gene FAD5  function Chloroplastic enzyme responsible for the synthesis of 16:1 fatty acids from galactolipids and sulpholipids. Uses ferredoxin as electron donor.  go_component thylakoid|GO:0009579|12068126|TAS  go_process unsaturated fatty acid biosynthetic process|GO:0006636|8754681|IMP  go_process photoinhibition|GO:0010205|12068126|IMP  go_function 16:0 monogalactosyldiacylglycerol desaturase activity|GO:0009979||IMP  go_function oxidoreductase activity|GO:0016491||ISS  product FAD5 (FATTY ACID DESATURASE 5); 16:0 monogalactosyldiacylglycerol desaturase/ oxidoreductase  note FATTY ACID DESATURASE 5 (FAD5); FUNCTIONS IN: 16:0 monogalactosyldiacylglycerol desaturase activity, oxidoreductase activity; INVOLVED IN: photoinhibition, unsaturated fatty acid biosynthetic process; LOCATED IN: thylakoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1, core (InterPro:IPR015876), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: oxidoreductase (TAIR:AT3G15870.1); Has 2715 Blast hits to 2715 proteins in 596 species: Archae - 0; Bacteria - 1084; Metazoa - 698; Fungi - 152; Plants - 71; Viruses - 3; Other Eukaryotes - 707 (source: NCBI BLink).  protein_id AT3G15850.1p  transcript_id AT3G15850.1  protein_id AT3G15850.1p  transcript_id AT3G15850.1  
At3g15860	chr3:005361207	0.0	C/5361207-5361719	AT3G15860.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: pollen tube; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26090.1); Has 11 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G15860.1p  transcript_id AT3G15860.1  protein_id AT3G15860.1p  transcript_id AT3G15860.1  
At3g15870	chr3:005362911	0.0	W/5362911-5363411,5363519-5363659,5363807-5363947,5364030-5364136,5364230-5364425	AT3G15870.1  CDS  go_process lipid metabolic process|GO:0006629||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product oxidoreductase  note oxidoreductase; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: lipid metabolic process; EXPRESSED IN: sepal; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1, core (InterPro:IPR015876), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: FAD5 (FATTY ACID DESATURASE 5); 16:0 monogalactosyldiacylglycerol desaturase/ oxidoreductase (TAIR:AT3G15850.1); Has 2698 Blast hits to 2698 proteins in 597 species: Archae - 0; Bacteria - 1082; Metazoa - 683; Fungi - 152; Plants - 71; Viruses - 3; Other Eukaryotes - 707 (source: NCBI BLink).  protein_id AT3G15870.1p  transcript_id AT3G15870.1  protein_id AT3G15870.1p  transcript_id AT3G15870.1  
At3g15880	chr3:005371790	0.0	C/5371790-5371869,5371440-5371619,5371237-5371350,5370967-5371125,5370705-5370882,5370499-5370619,5369854-5369975,5369603-5369771,5369344-5369453,5369038-5369107,5368838-5368911,5368366-5368461,5368197-5368292,5367777-5367904,5367448-5367682,5367204-5367368,5367013-5367111,5366761-5366904,5366365-5366475,5366100-5366279,5365876-5366004,5365685-5365780,5365362-5365550,5365076-5365242,5364792-5364987	AT3G15880.1  CDS  gene_syn TOPLESS-RELATED 4, TPR4, WSIP2, WUS-INTERACTING PROTEIN 2  gene WSIP2  go_component endomembrane system|GO:0012505||IEA  go_process primary shoot apical meristem specification|GO:0010072|16763149|IGI  go_function protein binding|GO:0005515|16461579|IPI  product protein binding  note WUS-INTERACTING PROTEIN 2 (WSIP2); FUNCTIONS IN: protein binding; INVOLVED IN: primary shoot apical meristem specification; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594); BEST Arabidopsis thaliana protein match is: TPL (TOPLESS); protein binding / protein homodimerization/ transcription repressor (TAIR:AT1G15750.4); Has 17042 Blast hits to 10319 proteins in 464 species: Archae - 20; Bacteria - 3150; Metazoa - 6623; Fungi - 3314; Plants - 1252; Viruses - 0; Other Eukaryotes - 2683 (source: NCBI BLink).  protein_id AT3G15880.1p  transcript_id AT3G15880.1  protein_id AT3G15880.1p  transcript_id AT3G15880.1  
At3g15880	chr3:005371790	0.0	C/5371790-5371869,5371440-5371619,5371237-5371350,5370967-5371125,5370705-5370882,5370499-5370619,5369854-5369975,5369603-5369771,5369344-5369453,5369038-5369107,5368838-5368911,5368366-5368461,5368197-5368292,5367777-5367904,5367448-5367682,5367204-5367368,5367013-5367111,5366761-5366904,5366365-5366475,5366100-5366279,5365876-5366004,5365685-5365780,5365362-5365550,5365076-5365242,5364796-5364987,5364454-5364463	AT3G15880.2  CDS  gene_syn TOPLESS-RELATED 4, TPR4, WSIP2, WUS-INTERACTING PROTEIN 2  gene WSIP2  go_component endomembrane system|GO:0012505||IEA  go_process primary shoot apical meristem specification|GO:0010072|16763149|IGI  go_function protein binding|GO:0005515|16461579|IPI  product protein binding  note WUS-INTERACTING PROTEIN 2 (WSIP2); FUNCTIONS IN: protein binding; INVOLVED IN: primary shoot apical meristem specification; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594); BEST Arabidopsis thaliana protein match is: TPL (TOPLESS); protein binding / protein homodimerization/ transcription repressor (TAIR:AT1G15750.4); Has 17038 Blast hits to 10327 proteins in 464 species: Archae - 20; Bacteria - 3139; Metazoa - 6620; Fungi - 3321; Plants - 1253; Viruses - 0; Other Eukaryotes - 2685 (source: NCBI BLink).  protein_id AT3G15880.2p  transcript_id AT3G15880.2  protein_id AT3G15880.2p  transcript_id AT3G15880.2  
At3g15890	chr3:005374389	0.0	W/5374389-5374429,5374912-5375059,5375146-5375408,5375481-5376114	AT3G15890.1  CDS  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase, active site (InterPro:IPR008266), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT1G52540.1); Has 67986 Blast hits to 67126 proteins in 2605 species: Archae - 21; Bacteria - 5679; Metazoa - 30484; Fungi - 4272; Plants - 16828; Viruses - 225; Other Eukaryotes - 10477 (source: NCBI BLink).  protein_id AT3G15890.1p  transcript_id AT3G15890.1  protein_id AT3G15890.1p  transcript_id AT3G15890.1  
At3g15900	chr3:005376745	0.0	C/5376745-5376972,5376356-5376553	AT3G15900.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 15 Blast hits to 15 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G15900.1p  transcript_id AT3G15900.1  protein_id AT3G15900.1p  transcript_id AT3G15900.1  
At3g15909	chr3:005381603	0.0	W/5381603-5381740	AT3G15909.1  CDS  go_component mitochondrion|GO:0005739||IEA  product unknown protein  note unknown protein; LOCATED IN: mitochondrion; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G15909.1p  transcript_id AT3G15909.1  protein_id AT3G15909.1p  transcript_id AT3G15909.1  
At3g15910	chr3:005382061	0.0	W/5382061-5382496,5382582-5383069	AT3G15910.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G15910.1p  transcript_id AT3G15910.1  protein_id AT3G15910.1p  transcript_id AT3G15910.1  
At3g15920	chr3:005386686	0.0	C/5386686-5386955,5386498-5386608,5386296-5386394,5386117-5386203,5385935-5386043,5385057-5385763,5384762-5384926,5384437-5384679,5384106-5384324,5383768-5384025	AT3G15920.1  CDS  go_process signal transduction|GO:0007165|15358268|ISS  go_process intracellular signaling cascade|GO:0007242||ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product phox (PX) domain-containing protein  note phox (PX) domain-containing protein; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction, intracellular signaling cascade; CONTAINS InterPro DOMAIN/s: Phox-like (InterPro:IPR001683); BEST Arabidopsis thaliana protein match is: phox (PX) domain-containing protein (TAIR:AT4G32160.1); Has 32140 Blast hits to 19498 proteins in 1025 species: Archae - 337; Bacteria - 2422; Metazoa - 17764; Fungi - 2188; Plants - 1026; Viruses - 108; Other Eukaryotes - 8295 (source: NCBI BLink).  protein_id AT3G15920.1p  transcript_id AT3G15920.1  protein_id AT3G15920.1p  transcript_id AT3G15920.1  
At3g15930	chr3:005387444	0.0	W/5387444-5389425,5389609-5389690	AT3G15930.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G29760.1); Has 15165 Blast hits to 5336 proteins in 179 species: Archae - 0; Bacteria - 2; Metazoa - 128; Fungi - 114; Plants - 14518; Viruses - 0; Other Eukaryotes - 403 (source: NCBI BLink).  protein_id AT3G15930.1p  transcript_id AT3G15930.1  protein_id AT3G15930.1p  transcript_id AT3G15930.1  
At3g15935	chr3:005390599	0.0	C/5390599-5391763	AT3G15935.1  pseudogenic_transcript  pseudo  gene_syn MVC8.6  note pseudogene, hypothetical protein  
At3g15940	chr3:005395230	0.0	C/5395230-5396187,5394130-5394965,5393966-5394022,5393632-5393874	AT3G15940.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyl transferase family 1 protein  note glycosyl transferase family 1 protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: glycosyl transferase family 1 protein (TAIR:AT1G52420.1); Has 6481 Blast hits to 6467 proteins in 933 species: Archae - 176; Bacteria - 3946; Metazoa - 40; Fungi - 36; Plants - 110; Viruses - 0; Other Eukaryotes - 2173 (source: NCBI BLink).  protein_id AT3G15940.1p  transcript_id AT3G15940.1  protein_id AT3G15940.1p  transcript_id AT3G15940.1  
At3g15950	chr3:005402536	0.0	C/5402536-5402610,5402387-5402441,5402268-5402309,5402058-5402173,5401875-5401944,5401677-5401751,5401543-5401590,5401388-5401453,5400946-5400993,5400792-5400854,5400655-5400702,5400484-5400558,5400352-5400399,5400193-5400258,5400054-5400101,5399903-5399968,5399770-5399817,5399603-5399671,5399469-5399516,5399310-5399354,5399180-5399230,5399047-5399079,5398908-5398967,5398793-5398822,5398588-5398691,5397783-5398490	AT3G15950.2  CDS  gene_syn NAI2  gene NAI2  function Similar to TSK-associating protein 1 (TSA1), contains 10 EFE repeats, a novel repeat sequence unique to plants. Expressed preferentially in the roots.Protein is localized to ER bodies- an endoplasmic reticulum derived structure. Loss of function mutations lack ER bodies.  go_component peroxisome|GO:0005777|17951448|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component ER body|GO:0010168|18780803|IDA  go_process ER body organization|GO:0080119|18780803|IMP  product NAI2  note NAI2; INVOLVED IN: ER body organization, response to salt stress; LOCATED IN: peroxisome, membrane, ER body; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: TSA1 (TSK-ASSOCIATING PROTEIN 1); calcium ion binding / protein binding (TAIR:AT1G52410.2); Has 38175 Blast hits to 24986 proteins in 1483 species: Archae - 532; Bacteria - 5432; Metazoa - 17318; Fungi - 3657; Plants - 1512; Viruses - 263; Other Eukaryotes - 9461 (source: NCBI BLink).  protein_id AT3G15950.2p  transcript_id AT3G15950.2  protein_id AT3G15950.2p  transcript_id AT3G15950.2  
At3g15950	chr3:005402536	0.0	C/5402536-5402610,5402387-5402441,5402268-5402309,5402058-5402173,5401875-5401944,5401677-5401751,5401543-5401590,5401388-5401453,5401246-5401293,5401080-5401145,5400946-5400993,5400792-5400854,5400655-5400702,5400484-5400558,5400352-5400399,5400193-5400258,5400054-5400101,5399903-5399968,5399770-5399817,5399603-5399671,5399469-5399516,5399310-5399354,5399180-5399230,5399047-5399079,5398908-5398967,5398793-5398822,5398588-5398691,5397783-5398490	AT3G15950.1  CDS  gene_syn NAI2  gene NAI2  function Similar to TSK-associating protein 1 (TSA1), contains 10 EFE repeats, a novel repeat sequence unique to plants. Expressed preferentially in the roots.Protein is localized to ER bodies- an endoplasmic reticulum derived structure. Loss of function mutations lack ER bodies.  go_component peroxisome|GO:0005777|17951448|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component ER body|GO:0010168|18780803|IDA  go_process ER body organization|GO:0080119|18780803|IMP  product NAI2  note NAI2; INVOLVED IN: ER body organization, response to salt stress; LOCATED IN: peroxisome, membrane, ER body; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: TSA1 (TSK-ASSOCIATING PROTEIN 1); calcium ion binding / protein binding (TAIR:AT1G52410.2); Has 42613 Blast hits to 27321 proteins in 1576 species: Archae - 631; Bacteria - 6126; Metazoa - 19552; Fungi - 4057; Plants - 1673; Viruses - 281; Other Eukaryotes - 10293 (source: NCBI BLink).  protein_id AT3G15950.1p  transcript_id AT3G15950.1  protein_id AT3G15950.1p  transcript_id AT3G15950.1  
At3g15960	chr3:005406387	0.0	C/5406387-5406461,5406226-5406265,5406107-5406136,5405913-5406022,5405756-5405828,5405590-5405670,5405433-5405480,5404979-5405185,5404775-5404890,5404000-5404692	AT3G15960.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process mismatch repair|GO:0006298||IEA  go_function ATP binding|GO:0005524||IEA  go_function mismatched DNA binding|GO:0030983||IEA  product ATP binding / mismatched DNA binding  note ATP binding / mismatched DNA binding; FUNCTIONS IN: mismatched DNA binding, ATP binding; INVOLVED IN: mismatch repair; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, connector (InterPro:IPR007860); BEST Arabidopsis thaliana protein match is: TSA1 (TSK-ASSOCIATING PROTEIN 1); calcium ion binding / protein binding (TAIR:AT1G52410.2); Has 3030 Blast hits to 1469 proteins in 263 species: Archae - 5; Bacteria - 692; Metazoa - 909; Fungi - 420; Plants - 106; Viruses - 5; Other Eukaryotes - 893 (source: NCBI BLink).  protein_id AT3G15960.1p  transcript_id AT3G15960.1  protein_id AT3G15960.1p  transcript_id AT3G15960.1  
At3g15970	chr3:005408982	0.0	C/5408982-5410379	AT3G15970.1  CDS  go_process intracellular transport|GO:0046907||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein  note Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ran Binding Protein 1 (InterPro:IPR000156), Pleckstrin homology-type (InterPro:IPR011993), NUP50 (Nucleoporin 50 kDa) (InterPro:IPR015007); BEST Arabidopsis thaliana protein match is: Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein (TAIR:AT1G52380.1); Has 3389 Blast hits to 2190 proteins in 293 species: Archae - 18; Bacteria - 770; Metazoa - 1329; Fungi - 556; Plants - 137; Viruses - 6; Other Eukaryotes - 573 (source: NCBI BLink).  protein_id AT3G15970.1p  transcript_id AT3G15970.1  protein_id AT3G15970.1p  transcript_id AT3G15970.1  
At3g15980	chr3:005418311	0.0	C/5418311-5418313,5417918-5417938,5417771-5417832,5417553-5417607,5417333-5417369,5416895-5417220,5416662-5416793,5416423-5416571,5416173-5416241,5415787-5415937,5415613-5415678,5415112-5415300,5414837-5414977,5414622-5414696,5414348-5414524,5414178-5414269,5413973-5414089,5413638-5413752,5413467-5413538,5413030-5413226,5412851-5412944,5412660-5412766,5412289-5412418,5412015-5412194	AT3G15980.2  CDS  go_component membrane coat|GO:0030117||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function structural molecule activity|GO:0005198||IEA  go_function protein binding|GO:0005515||IEA  go_component COPI vesicle coat|GO:0030126||ISS  product coatomer protein complex, subunit beta 2 (beta prime), putative  note coatomer protein complex, subunit beta 2 (beta prime), putative; FUNCTIONS IN: protein binding, structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Coatomer, WD associated region (InterPro:IPR006692), Coatomer, beta&apos; subunit (InterPro:IPR016453), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: coatomer protein complex, subunit beta 2 (beta prime), putative (TAIR:AT1G52360.1); Has 57333 Blast hits to 24299 proteins in 627 species: Archae - 54; Bacteria - 5837; Metazoa - 26640; Fungi - 11198; Plants - 5332; Viruses - 3; Other Eukaryotes - 8269 (source: NCBI BLink).  protein_id AT3G15980.2p  transcript_id AT3G15980.2  protein_id AT3G15980.2p  transcript_id AT3G15980.2  
At3g15980	chr3:005418311	0.0	C/5418311-5418313,5417918-5417938,5417771-5417832,5417553-5417607,5417333-5417369,5416895-5417220,5416662-5416793,5416423-5416571,5416173-5416241,5415787-5415937,5415613-5415678,5415112-5415300,5414837-5414977,5414622-5414696,5414348-5414524,5414178-5414269,5413973-5414089,5413638-5413752,5413467-5413538,5413030-5413226,5412851-5412944,5412660-5412766,5412289-5412418,5412015-5412194	AT3G15980.3  CDS  go_component membrane coat|GO:0030117||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function structural molecule activity|GO:0005198||IEA  go_function protein binding|GO:0005515||IEA  go_component COPI vesicle coat|GO:0030126||ISS  product coatomer protein complex, subunit beta 2 (beta prime), putative  note coatomer protein complex, subunit beta 2 (beta prime), putative; FUNCTIONS IN: protein binding, structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Coatomer, WD associated region (InterPro:IPR006692), Coatomer, beta&apos; subunit (InterPro:IPR016453), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: coatomer protein complex, subunit beta 2 (beta prime), putative (TAIR:AT1G52360.1); Has 57333 Blast hits to 24299 proteins in 627 species: Archae - 54; Bacteria - 5837; Metazoa - 26640; Fungi - 11198; Plants - 5332; Viruses - 3; Other Eukaryotes - 8269 (source: NCBI BLink).  protein_id AT3G15980.3p  transcript_id AT3G15980.3  protein_id AT3G15980.3p  transcript_id AT3G15980.3  
At3g15980	chr3:005418311	0.0	C/5418311-5418313,5417918-5417938,5417771-5417832,5417553-5417607,5417333-5417369,5416895-5417220,5416662-5416793,5416423-5416571,5416173-5416241,5415787-5415937,5415613-5415678,5415112-5415300,5414837-5414977,5414622-5414696,5414348-5414524,5414178-5414269,5413973-5414089,5413638-5413752,5413467-5413538,5413030-5413226,5412851-5412944,5412660-5412766,5412289-5412418,5412062-5412194,5411699-5411718	AT3G15980.1  CDS  go_component membrane coat|GO:0030117||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function structural molecule activity|GO:0005198||IEA  go_function protein binding|GO:0005515||IEA  go_component COPI vesicle coat|GO:0030126||ISS  product coatomer protein complex, subunit beta 2 (beta prime), putative  note coatomer protein complex, subunit beta 2 (beta prime), putative; FUNCTIONS IN: protein binding, structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Coatomer, WD associated region (InterPro:IPR006692), Coatomer, beta  subunit (InterPro:IPR016453), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: coatomer protein complex, subunit beta 2 (beta prime), putative (TAIR:AT1G52360.1); Has 57297 Blast hits to 24232 proteins in 625 species: Archae - 56; Bacteria - 5864; Metazoa - 26606; Fungi - 11197; Plants - 5326; Viruses - 0; Other Eukaryotes - 8248 (source: NCBI BLink).  protein_id AT3G15980.1p  transcript_id AT3G15980.1  protein_id AT3G15980.1p  transcript_id AT3G15980.1  
At3g15990	chr3:005427081	0.0	W/5427081-5427398,5427830-5427878,5427966-5428173,5428536-5428707,5428785-5428850,5428945-5429058,5429137-5429253,5429342-5429468,5429553-5429839,5429917-5430107,5430197-5430282,5430367-5430443,5430530-5430679	AT3G15990.1  CDS  gene_syn MSL1.24, SULFATE TRANSPORTER 3;4, SULTR3;4  gene SULTR3;4  function Encodes sulfate transporter Sultr3;4.  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process sulfate transport|GO:0008272||IEA  go_function sulfate transmembrane transporter activity|GO:0015116||ISS  product SULTR3;4 (SULFATE TRANSPORTER 3;4); sulfate transmembrane transporter  note SULFATE TRANSPORTER 3;4 (SULTR3;4); FUNCTIONS IN: sulfate transmembrane transporter activity; INVOLVED IN: sulfate transport, transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Sulphate transporter (InterPro:IPR011547), Sulphate transporter/antisigma-factor antagonist STAS (InterPro:IPR002645), Sulphate anion transporter, conserved site (InterPro:IPR018045), Sulphate anion transporter (InterPro:IPR001902); BEST Arabidopsis thaliana protein match is: AST91 (SULFATE TRANSPORTER 91); sulfate transmembrane transporter (TAIR:AT1G23090.1); Has 6740 Blast hits to 6700 proteins in 1091 species: Archae - 34; Bacteria - 3425; Metazoa - 977; Fungi - 267; Plants - 322; Viruses - 0; Other Eukaryotes - 1715 (source: NCBI BLink).  protein_id AT3G15990.1p  transcript_id AT3G15990.1  protein_id AT3G15990.1p  transcript_id AT3G15990.1  
At3g16000	chr3:005433322	0.0	C/5433322-5433613,5433183-5433226,5432928-5433071,5431041-5432741	AT3G16000.1  CDS  gene_syn MAR BINDING FILAMENT-LIKE PROTEIN 1, MFP1  gene MFP1  function encodes a DNA-binding protein that binds to plastid DNA non-specifically and is associated with nucleoids and thylakoid membranes. The expression of the gene is correlated with the development of thylakoid membranes.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast thylakoid membrane|GO:0009535|12930969|IDA  go_component plastid nucleoid|GO:0042646|12930969|IDA  go_function DNA binding|GO:0003677|12930969|IDA  product MFP1 (MAR BINDING FILAMENT-LIKE PROTEIN 1); DNA binding  note MAR BINDING FILAMENT-LIKE PROTEIN 1 (MFP1); FUNCTIONS IN: DNA binding; LOCATED IN: chloroplast thylakoid membrane, chloroplast, plastid nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16730.1); Has 197293 Blast hits to 87684 proteins in 2437 species: Archae - 2340; Bacteria - 34930; Metazoa - 87467; Fungi - 13816; Plants - 7178; Viruses - 1043; Other Eukaryotes - 50519 (source: NCBI BLink).  protein_id AT3G16000.1p  transcript_id AT3G16000.1  protein_id AT3G16000.1p  transcript_id AT3G16000.1  
At3g16010	chr3:005434142	0.0	W/5434142-5434226,5434401-5436244	AT3G16010.1  CDS  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G06920.1); Has 23807 Blast hits to 6121 proteins in 194 species: Archae - 4; Bacteria - 31; Metazoa - 715; Fungi - 613; Plants - 21334; Viruses - 0; Other Eukaryotes - 1110 (source: NCBI BLink).  protein_id AT3G16010.1p  transcript_id AT3G16010.1  protein_id AT3G16010.1p  transcript_id AT3G16010.1  
At3g16020	chr3:005438287	0.0	W/5438287-5438449,5438518-5438651	AT3G16020.1  CDS  go_process lipid metabolic process|GO:0006629||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_function phospholipase C activity|GO:0004629||IEA  go_component cellular_component|GO:0005575||ND  product phospholipase C  note phospholipase C; FUNCTIONS IN: phospholipase C activity; INVOLVED IN: intracellular signaling cascade, lipid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific , X region (InterPro:IPR000909), F-box associated (InterPro:IPR006527); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G36820.1); Has 209 Blast hits to 204 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 209; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G16020.1p  transcript_id AT3G16020.1  protein_id AT3G16020.1p  transcript_id AT3G16020.1  
At3g16030	chr3:005439609	0.0	W/5439609-5439825,5439859-5440898,5441014-5441174,5441379-5441589,5441659-5441869,5441936-5442173,5442253-5442406,5442482-5442802	AT3G16030.1  CDS  gene_syn CALLUS EXPRESSION OF RBCS 101, CES101  gene CES101  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product CES101 (CALLUS EXPRESSION OF RBCS 101); ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding  note CALLUS EXPRESSION OF RBCS 101 (CES101); FUNCTIONS IN: in 7 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609), PAN-like, type 2 (InterPro:IPR013227), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: B120; ATP binding / protein kinase/ protein serine/threonine kinase/ sugar binding (TAIR:AT4G21390.1); Has 87470 Blast hits to 86061 proteins in 3095 species: Archae - 52; Bacteria - 7451; Metazoa - 38018; Fungi - 6909; Plants - 19884; Viruses - 415; Other Eukaryotes - 14741 (source: NCBI BLink).  protein_id AT3G16030.1p  transcript_id AT3G16030.1  protein_id AT3G16030.1p  transcript_id AT3G16030.1  
At3g16040	chr3:005443202	0.0	W/5443202-5443217,5443476-5443531,5443606-5443647,5443730-5443810	AT3G16040.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Translation machinery associated TMA7 (InterPro:IPR015157); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15270.1); Has 264 Blast hits to 264 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 48; Plants - 41; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT3G16040.1p  transcript_id AT3G16040.1  protein_id AT3G16040.1p  transcript_id AT3G16040.1  
At3g16050	chr3:005444121	0.0	C/5444121-5445065	AT3G16050.1  CDS  gene_syn A37, PYRIDOXINE BIOSYNTHESIS 1.2, atpdx1.2  gene A37  function Encodes a protein with pyridoxal phosphate synthase activity whose transcripts were detected mostly in roots and accumulate during senescence. The protein was found in very low abundance, which prevented a specific localisation.  go_process metabolic process|GO:0008152||IEA  go_component cytosol|GO:0005829|16157873|IDA  go_function protein heterodimerization activity|GO:0046982|16766694|IPI  product A37; protein heterodimerization  note A37; FUNCTIONS IN: protein heterodimerization activity; INVOLVED IN: metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Vitamin B6 biosynthesis protein (InterPro:IPR001852), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: RSR4 (REDUCED SUGAR RESPONSE 4); protein heterodimerization/ protein homodimerization (TAIR:AT5G01410.1); Has 1949 Blast hits to 1947 proteins in 544 species: Archae - 154; Bacteria - 818; Metazoa - 10; Fungi - 98; Plants - 131; Viruses - 0; Other Eukaryotes - 738 (source: NCBI BLink).  protein_id AT3G16050.1p  transcript_id AT3G16050.1  protein_id AT3G16050.1p  transcript_id AT3G16050.1  
At3g16060	chr3:005447503	0.0	W/5447503-5447640,5447843-5448052,5448449-5448619,5448740-5448841,5448937-5449014,5449120-5449201,5449485-5449644,5449732-5450034,5450127-5450345,5450431-5450776,5450871-5450936,5451017-5451196	AT3G16060.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_function microtubule motor activity|GO:0003777||ISS  product kinesin motor family protein  note kinesin motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: KINESIN-13A; ATP binding / microtubule motor (TAIR:AT3G16630.2); Has 7368 Blast hits to 7163 proteins in 235 species: Archae - 0; Bacteria - 4; Metazoa - 3690; Fungi - 887; Plants - 902; Viruses - 0; Other Eukaryotes - 1885 (source: NCBI BLink).  protein_id AT3G16060.1p  transcript_id AT3G16060.1  protein_id AT3G16060.1p  transcript_id AT3G16060.1  
At3g16070	chr3:005451864	0.0	C/5451864-5452316	AT3G16070.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15260.1); Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G16070.1p  transcript_id AT3G16070.1  protein_id AT3G16070.1p  transcript_id AT3G16070.1  
At3g16080	chr3:005454892	0.0	W/5454892-5454894,5454979-5455114,5455449-5455550,5455631-5455677	AT3G16080.1  CDS  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L37 (RPL37C)  note 60S ribosomal protein L37 (RPL37C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, ribosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L37e, conserved site (InterPro:IPR018267), Ribosomal protein, zinc-binding (InterPro:IPR011332), Ribosomal protein L37e (InterPro:IPR001569), Ribosomal protein L37ae/L37e, core (InterPro:IPR011331); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L37 (RPL37B) (TAIR:AT1G52300.1); Has 707 Blast hits to 707 proteins in 247 species: Archae - 202; Bacteria - 0; Metazoa - 220; Fungi - 103; Plants - 72; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT3G16080.1p  transcript_id AT3G16080.1  protein_id AT3G16080.1p  transcript_id AT3G16080.1  
At3g16090	chr3:005456513	0.0	W/5456513-5457045,5457135-5457311,5457470-5457619,5457755-5457960,5458107-5458266,5458358-5458511,5458596-5458694	AT3G16090.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G65040.2); Has 5161 Blast hits to 5147 proteins in 202 species: Archae - 0; Bacteria - 4; Metazoa - 1989; Fungi - 500; Plants - 1759; Viruses - 20; Other Eukaryotes - 889 (source: NCBI BLink).  protein_id AT3G16090.1p  transcript_id AT3G16090.1  protein_id AT3G16090.1p  transcript_id AT3G16090.1  
At3g16100	chr3:005459270	0.0	W/5459270-5459322,5459421-5459447,5459537-5459636,5459826-5459972,5460059-5460139,5460227-5460372,5460490-5460556	AT3G16100.1  CDS  gene_syn ARABIDOPSIS RAB GTPASE HOMOLOG G3C, ATRAB7D, ATRABG3C  gene ATRABG3C  go_component nucleus|GO:0005634|14617066|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C); GTP binding  note ARABIDOPSIS RAB GTPASE HOMOLOG G3C (ATRABG3C); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: AtRABG3d (Arabidopsis Rab GTPase homolog G3d); GTP binding (TAIR:AT1G52280.1); Has 20446 Blast hits to 20424 proteins in 613 species: Archae - 18; Bacteria - 114; Metazoa - 11379; Fungi - 2371; Plants - 1775; Viruses - 19; Other Eukaryotes - 4770 (source: NCBI BLink).  protein_id AT3G16100.1p  transcript_id AT3G16100.1  protein_id AT3G16100.1p  transcript_id AT3G16100.1  
At3g16110	chr3:005463158	0.0	C/5463158-5463666,5462941-5463070,5462680-5462848,5462353-5462471,5462156-5462236,5461974-5462063,5461815-5461886,5461661-5461729,5461501-5461581,5461275-5461409,5461140-5461193,5460955-5461050	AT3G16110.1  CDS  gene_syn ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, ATPDI4, ATPDIL1-6, PDI-LIKE 1-6, PDI4, PROTEIN DISULFIDE ISOMERASE 4  gene ATPDIL1-6  function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin).  go_process cell redox homeostasis|GO:0045454||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_function protein disulfide isomerase activity|GO:0003756|18574595|ISS  product ATPDIL1-6 (PDI-LIKE 1-6); protein disulfide isomerase  note PDI-LIKE 1-6 (ATPDIL1-6); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATPDIL1-5 (PDI-LIKE 1-5); protein disulfide isomerase (TAIR:AT1G52260.1); Has 7015 Blast hits to 5347 proteins in 985 species: Archae - 30; Bacteria - 1852; Metazoa - 2250; Fungi - 541; Plants - 723; Viruses - 1; Other Eukaryotes - 1618 (source: NCBI BLink).  protein_id AT3G16110.1p  transcript_id AT3G16110.1  protein_id AT3G16110.1p  transcript_id AT3G16110.1  
At3g16117	chr3:005464543	0.0	W/5464543-5464710	AT3G16117.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G16117.1p  transcript_id AT3G16117.1  protein_id AT3G16117.1p  transcript_id AT3G16117.1  
At3g16120	chr3:005465035	0.0	W/5465035-5465172,5465252-5465395	AT3G16120.1  CDS  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based process|GO:0007017||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_component microtubule associated complex|GO:0005875||ISS  go_process microtubule-based process|GO:0007017||ISS  go_function microtubule motor activity|GO:0003777||ISS  product dynein light chain, putative  note dynein light chain, putative; FUNCTIONS IN: microtubule motor activity; INVOLVED IN: microtubule-based process; LOCATED IN: microtubule associated complex; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Dynein light chain, type 1 and 2 (InterPro:IPR001372); BEST Arabidopsis thaliana protein match is: ROPGEF11 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 11); Rho guanyl-nucleotide exchange factor (TAIR:AT1G52240.2); Has 873 Blast hits to 873 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 488; Fungi - 70; Plants - 115; Viruses - 0; Other Eukaryotes - 200 (source: NCBI BLink).  protein_id AT3G16120.1p  transcript_id AT3G16120.1  protein_id AT3G16120.1p  transcript_id AT3G16120.1  
At3g16130	chr3:005466246	0.0	W/5466246-5466531,5466695-5467062,5467143-5467217,5467302-5467574,5467689-5468015,5468111-5468512	AT3G16130.1  CDS  gene_syn ATROPGEF13, ROPGEF13  gene ROPGEF13  function Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function Rho guanyl-nucleotide exchange factor activity|GO:0005089|15980860|ISS  product ROPGEF13; Rho guanyl-nucleotide exchange factor  note ROPGEF13; FUNCTIONS IN: Rho guanyl-nucleotide exchange factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: ROPGEF11 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 11); Rho guanyl-nucleotide exchange factor (TAIR:AT1G52240.1); Has 178 Blast hits to 177 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G16130.1p  transcript_id AT3G16130.1  protein_id AT3G16130.1p  transcript_id AT3G16130.1  
At3g16140	chr3:005469285	0.0	C/5469285-5469415,5468940-5469066,5468670-5468849	AT3G16140.1  CDS  gene_syn PSAH-1, PSI-H, photosystem I subunit H-1  gene PSAH-1  function Encodes subunit H of photosystem I reaction center subunit VI.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process photosynthesis|GO:0015979||IEA  go_component photosystem I reaction center|GO:0009538||ISS  go_process photosynthesis|GO:0015979||ISS  go_function molecular_function|GO:0003674||ND  product PSAH-1 (photosystem I subunit H-1)  note photosystem I subunit H-1 (PSAH-1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthesis; LOCATED IN: chloroplast thylakoid membrane, chloroplast, photosystem I reaction center; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre subunit VI (InterPro:IPR004928); BEST Arabidopsis thaliana protein match is: PSAH2 (PHOTOSYSTEM I SUBUNIT H2) (TAIR:AT1G52230.1); Has 72 Blast hits to 72 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G16140.1p  transcript_id AT3G16140.1  protein_id AT3G16140.1p  transcript_id AT3G16140.1  
At3g16150	chr3:005471794	0.0	W/5471794-5471955,5472031-5472264,5472353-5472439,5472539-5473033	AT3G16150.1  CDS  go_component cellular_component|GO:0005575||ND  go_process glycoprotein catabolic process|GO:0006516||ISS  go_function asparaginase activity|GO:0004067|16705405|IDA  go_function asparaginase activity|GO:0004067||ISS  product L-asparaginase, putative / L-asparagine amidohydrolase, putative  note L-asparaginase, putative / L-asparagine amidohydrolase, putative; FUNCTIONS IN: asparaginase activity; INVOLVED IN: glycoprotein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase T2, asparaginase 2 (InterPro:IPR000246); BEST Arabidopsis thaliana protein match is: L-asparaginase / L-asparagine amidohydrolase (TAIR:AT5G08100.1); Has 2315 Blast hits to 2278 proteins in 520 species: Archae - 67; Bacteria - 879; Metazoa - 428; Fungi - 143; Plants - 115; Viruses - 0; Other Eukaryotes - 683 (source: NCBI BLink).  protein_id AT3G16150.1p  transcript_id AT3G16150.1  protein_id AT3G16150.1p  transcript_id AT3G16150.1  
At3g16160	chr3:005474954	0.0	C/5474954-5475090,5474751-5474846,5474445-5474613,5474107-5474337,5473922-5474019,5473729-5473832,5473366-5473637	AT3G16160.1  CDS  go_component cellular_component|GO:0005575||ND  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tesmin/TSO1-like, CXC (InterPro:IPR005172); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT5G25790.1); Has 852 Blast hits to 519 proteins in 69 species: Archae - 0; Bacteria - 0; Metazoa - 287; Fungi - 0; Plants - 208; Viruses - 0; Other Eukaryotes - 357 (source: NCBI BLink).  protein_id AT3G16160.1p  transcript_id AT3G16160.1  protein_id AT3G16160.1p  transcript_id AT3G16160.1  
At3g16170	chr3:005476490	0.0	W/5476490-5476639,5476753-5476938,5477260-5477431,5477558-5477643,5477769-5477891,5478004-5478111,5478498-5478596,5478729-5478821,5478942-5479019,5479142-5479328,5479424-5479497,5479639-5479818,5479915-5479968,5480084-5480128	AT3G16170.1  CDS  go_component membrane|GO:0016020|17432890|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function AMP binding|GO:0016208||ISS  product acyl-activating enzyme 13 (AAE13)  note acyl-activating enzyme 13 (AAE13); FUNCTIONS IN: catalytic activity, AMP binding; INVOLVED IN: metabolic process; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT3G48990.1); Has 53767 Blast hits to 49694 proteins in 2304 species: Archae - 568; Bacteria - 29439; Metazoa - 2799; Fungi - 2958; Plants - 1240; Viruses - 1; Other Eukaryotes - 16762 (source: NCBI BLink).  protein_id AT3G16170.1p  transcript_id AT3G16170.1  protein_id AT3G16170.1p  transcript_id AT3G16170.1  
At3g16175	chr3:005480497	0.0	W/5480497-5480658,5480765-5480905,5481038-5481208	AT3G16175.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function acyl-CoA thioesterase activity|GO:0016291||ISS  go_function hydrolase activity, acting on ester bonds|GO:0016788||ISS  product thioesterase family protein  note thioesterase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Thioesterase superfamily (InterPro:IPR006683); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52191.1); Has 207 Blast hits to 207 proteins in 44 species: Archae - 0; Bacteria - 4; Metazoa - 96; Fungi - 4; Plants - 99; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G16175.1p  transcript_id AT3G16175.1  protein_id AT3G16175.1p  transcript_id AT3G16175.1  
At3g16180	chr3:005484841	0.0	C/5484841-5484943,5484537-5484754,5482452-5483008,5481477-5482374	AT3G16180.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process oligopeptide transport|GO:0006857||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT1G52190.1); Has 3416 Blast hits to 3236 proteins in 617 species: Archae - 0; Bacteria - 1225; Metazoa - 554; Fungi - 266; Plants - 1108; Viruses - 0; Other Eukaryotes - 263 (source: NCBI BLink).  protein_id AT3G16180.1p  transcript_id AT3G16180.1  protein_id AT3G16180.1p  transcript_id AT3G16180.1  
At3g16190	chr3:005491148	0.0	C/5491148-5491195,5490946-5491059,5490316-5490553,5490097-5490213,5489883-5489956	AT3G16190.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function catalytic activity|GO:0003824||ISS  product isochorismatase hydrolase family protein  note isochorismatase hydrolase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Isochorismatase hydrolase (InterPro:IPR000868); Has 3706 Blast hits to 3703 proteins in 851 species: Archae - 95; Bacteria - 2998; Metazoa - 0; Fungi - 127; Plants - 43; Viruses - 0; Other Eukaryotes - 443 (source: NCBI BLink).  protein_id AT3G16190.1p  transcript_id AT3G16190.1  protein_id AT3G16190.1p  transcript_id AT3G16190.1  
At3g16200	chr3:005493218	0.0	C/5493218-5493605,5492328-5492772,5492127-5492242,5491619-5492040	AT3G16200.1  CDS  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 70 Blast hits to 70 proteins in 9 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT3G16200.1p  transcript_id AT3G16200.1  protein_id AT3G16200.1p  transcript_id AT3G16200.1  
At3g16210	chr3:005494533	0.0	C/5494533-5495615	AT3G16210.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein-related (TAIR:AT1G32600.1); Has 1429 Blast hits to 1424 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1427; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G16210.1p  transcript_id AT3G16210.1  protein_id AT3G16210.1p  transcript_id AT3G16210.1  
At3g16220	chr3:005497713	0.0	W/5497713-5497793,5497927-5498077,5498155-5498267,5498363-5498428,5498502-5498592,5498691-5498755,5498862-5499068	AT3G16220.1  CDS  go_component cytoplasm|GO:0005737||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Predicted eukaryotic LigT (InterPro:IPR009210); BEST Arabidopsis thaliana protein match is: RNA binding / catalytic (TAIR:AT3G16230.1); Has 197 Blast hits to 196 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 146; Fungi - 9; Plants - 18; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT3G16220.1p  transcript_id AT3G16220.1  protein_id AT3G16220.1p  transcript_id AT3G16220.1  
At3g16230	chr3:005500563	0.0	W/5500563-5500588,5500759-5500807,5500946-5501069,5501158-5501279,5501363-5501400,5501476-5501555,5501692-5501759,5501868-5502147,5502239-5502351,5502431-5502496,5502603-5502693,5502800-5502867,5502991-5503031,5503120-5503303	AT3G16230.1  CDS  go_process RNA metabolic process|GO:0016070||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function RNA binding|GO:0003723||IEA  go_function catalytic activity|GO:0003824||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  product RNA binding / catalytic  note RNA binding / catalytic; FUNCTIONS IN: RNA binding, catalytic activity; INVOLVED IN: RNA metabolic process, regulation of transcription; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111), K Homology, type 1 (InterPro:IPR004088), Predicted eukaryotic LigT (InterPro:IPR009210), RNA ligase/cyclic nucleotide phosphodiesterase (InterPro:IPR009097); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16220.1); Has 210 Blast hits to 206 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 160; Fungi - 11; Plants - 20; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT3G16230.1p  transcript_id AT3G16230.1  protein_id AT3G16230.1p  transcript_id AT3G16230.1  
At3g16240	chr3:005505534	0.0	W/5505534-5505660,5505764-5506014,5506414-5506788	AT3G16240.1  CDS  gene_syn AQP1, ATTIP2;1, DELTA TONOPLAST INTEGRAL PROTEIN, DELTA-TIP, DELTA-TIP1, TIP2;1  gene DELTA-TIP  function Delta tonoplast intrinsic protein, functions as a water channel and ammonium (NH3) transporter. Highly expressed in flower, shoot, and stem. Expression shows diurnal regulation and is induced by ammonium (NH3). Protein localized to vacuolar membrane.  go_component cell wall|GO:0005618|16287169|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_process transport|GO:0006810||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_component plant-type vacuole membrane|GO:0009705|8624437|IDA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_function methylammonium transmembrane transporter activity|GO:0015200|15665250|IDA  go_function water channel activity|GO:0015250|8624437|IDA  go_function water channel activity|GO:0015250||ISS  go_function ammonia transporter activity|GO:0051739|15665250|IGI  product DELTA-TIP; ammonia transporter/ methylammonium transmembrane transporter/ water channel  note DELTA-TIP; FUNCTIONS IN: ammonia transporter activity, water channel activity, methylammonium transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: TIP2;2 (TONOPLAST INTRINSIC PROTEIN 2;2); water channel (TAIR:AT4G17340.1); Has 6901 Blast hits to 6871 proteins in 1254 species: Archae - 61; Bacteria - 2645; Metazoa - 1299; Fungi - 265; Plants - 1456; Viruses - 0; Other Eukaryotes - 1175 (source: NCBI BLink).  protein_id AT3G16240.1p  transcript_id AT3G16240.1  protein_id AT3G16240.1p  transcript_id AT3G16240.1  
At3g16250	chr3:005508093	0.0	C/5508093-5508320,5507747-5507857,5507593-5507649,5507439-5507501,5507286-5507348,5507091-5507183	AT3G16250.1  CDS  gene_syn NDF4, NDH-DEPENDENT CYCLIC ELECTRON FLOW 1  gene NDF4  function encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP. Contains a 4Fe-4S cluster.  go_component chloroplast|GO:0009507|15028209|IDA  go_function electron carrier activity|GO:0009055||IEA  go_function iron-sulfur cluster binding|GO:0051536||IEA  go_component chloroplast thylakoid membrane|GO:0009535|18785996|IDA  go_component NAD(P)H dehydrogenase complex (plastoquinone)|GO:0010598|18785996|IDA  go_component NAD(P)H dehydrogenase complex (plastoquinone)|GO:0010598|18785996|IMP  go_process photosynthetic electron transport in photosystem I|GO:0009773|18785996|IMP  go_function electron carrier activity|GO:0009055||ISS  product NDF4 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1); electron carrier/ iron-sulfur cluster binding  note NDH-DEPENDENT CYCLIC ELECTRON FLOW 1 (NDF4); FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding; INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: ferredoxin-related (TAIR:AT4G32590.1); Has 390 Blast hits to 390 proteins in 88 species: Archae - 2; Bacteria - 199; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 154 (source: NCBI BLink).  protein_id AT3G16250.1p  transcript_id AT3G16250.1  protein_id AT3G16250.1p  transcript_id AT3G16250.1  
At3g16260	chr3:005509397	0.0	W/5509397-5509792,5509871-5509960,5510038-5510082,5510174-5510228,5510323-5510366,5510483-5510878,5510969-5511234,5511318-5511462,5511551-5511601,5511697-5512689,5512771-5513118	AT3G16260.1  CDS  gene_syn TRNASE Z 4, TRZ4  gene TRZ4  function Encodes a tRNase Z.  go_component chloroplast|GO:0009507||IEA  go_process metabolic process|GO:0008152||ISS  go_process tRNA 3 -end processing|GO:0042780|19411372|IDA  go_function catalytic activity|GO:0003824||ISS  go_function 3 -tRNA processing endoribonuclease activity|GO:0042781|19411372|IDA  product TRZ4 (TRNASE Z 4); 3 -tRNA processing endoribonuclease/ catalytic  note TRNASE Z 4 (TRZ4); FUNCTIONS IN: 3 -tRNA processing endoribonuclease activity, catalytic activity; INVOLVED IN: tRNA 3 -end processing, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279); BEST Arabidopsis thaliana protein match is: TRZ3 (TRNASE Z 3); 3 -tRNA processing endoribonuclease/ catalytic (TAIR:AT1G52160.1); Has 3737 Blast hits to 2640 proteins in 877 species: Archae - 291; Bacteria - 2169; Metazoa - 223; Fungi - 156; Plants - 46; Viruses - 0; Other Eukaryotes - 852 (source: NCBI BLink).  protein_id AT3G16260.1p  transcript_id AT3G16260.1  protein_id AT3G16260.1p  transcript_id AT3G16260.1  
At3g16270	chr3:005513701	0.0	W/5513701-5513907,5514191-5514928,5515101-5515256,5515347-5516276,5516499-5516540	AT3G16270.1  CDS  gene_syn MYA6.8  go_component membrane|GO:0016020|17432890|IDA  go_process intracellular protein transport|GO:0006886||IEA  product unknown protein  note INVOLVED IN: intracellular protein transport; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), ENTH/VHS (InterPro:IPR008942); Has 113 Blast hits to 112 proteins in 49 species: Archae - 0; Bacteria - 3; Metazoa - 48; Fungi - 1; Plants - 23; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT3G16270.1p  transcript_id AT3G16270.1  protein_id AT3G16270.1p  transcript_id AT3G16270.1  
At3g16280	chr3:005518355	0.0	W/5518355-5519065	AT3G16280.1  CDS  function encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product DNA binding / transcription factor  note DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: shoot apex, leaf whorl, inflorescence meristem, hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: TINY2 (TINY2); DNA binding / transcription factor (TAIR:AT5G11590.1); Has 3867 Blast hits to 3710 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 4; Plants - 3852; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G16280.1p  transcript_id AT3G16280.1  protein_id AT3G16280.1p  transcript_id AT3G16280.1  
At3g16290	chr3:005523666	0.0	C/5523666-5524995,5523378-5523550,5523103-5523204,5522857-5523021,5522589-5522729,5522194-5522352,5522014-5522099,5521844-5521922,5521629-5521751,5521495-5521551,5521187-5521402	AT3G16290.1  CDS  gene_syn EMB2083, embryo defective 2083  gene EMB2083  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP-dependent peptidase activity|GO:0004176||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function metallopeptidase activity|GO:0008237||ISS  go_function ATPase activity|GO:0016887||ISS  product EMB2083 (embryo defective 2083); ATP binding / ATP-dependent peptidase/ ATPase/ metalloendopeptidase/ metallopeptidase/ nucleoside-triphosphatase/ nucleotide binding / serine-type endopeptidase  note embryo defective 2083 (EMB2083); FUNCTIONS IN: in 8 functions; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Peptidase M41 (InterPro:IPR000642), Peptidase S16, Lon protease, C-terminal region (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: VAR1 (VARIEGATED 1); ATP-dependent peptidase/ ATPase/ metallopeptidase (TAIR:AT5G42270.1); Has 29536 Blast hits to 25904 proteins in 1818 species: Archae - 856; Bacteria - 7365; Metazoa - 6159; Fungi - 2943; Plants - 1927; Viruses - 21; Other Eukaryotes - 10265 (source: NCBI BLink).  protein_id AT3G16290.1p  transcript_id AT3G16290.1  protein_id AT3G16290.1p  transcript_id AT3G16290.1  
At3g16300	chr3:005525924	0.0	C/5525924-5526207,5525491-5525845	AT3G16300.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane family protein  note integral membrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79780.1); Has 214 Blast hits to 214 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 214; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G16300.1p  transcript_id AT3G16300.1  protein_id AT3G16300.1p  transcript_id AT3G16300.1  
At3g16310	chr3:005527529	0.0	C/5527529-5528106,5527039-5527150,5526593-5526892	AT3G16310.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitotic phosphoprotein N  end (MPPN) family protein  note mitotic phosphoprotein N  end (MPPN) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: MPPN (InterPro:IPR007846), Nucleoporin, NUP53 (InterPro:IPR017389); Has 170 Blast hits to 170 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 124; Fungi - 5; Plants - 32; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G16310.1p  transcript_id AT3G16310.1  protein_id AT3G16310.1p  transcript_id AT3G16310.1  
At3g16320	chr3:005529534	0.0	W/5529534-5529641,5530126-5530198,5530300-5530409,5530549-5530595,5530770-5530867,5530987-5531276,5531440-5531568,5531794-5531971,5532180-5532358,5532475-5532540,5532676-5532795,5532992-5533068,5533300-5533419,5533506-5533725,5533937-5534218,5534409-5534465	AT3G16320.1  CDS  gene_syn CDC27a  gene CDC27a  function Subunit in the anaphase-promoting complex. Role in gametogenesis, control of mitotic progression and cell differentiation during the entire life cycle.  go_function binding|GO:0005488||IEA  go_component anaphase-promoting complex|GO:0005680|17944809|IPI  go_process cell cycle|GO:0007049||ISS  go_process gamete generation|GO:0007276|17944809|IGI  go_process regulation of cell division|GO:0051302|17944809|IGI  go_process regulation of unidimensional cell growth|GO:0051510|17944809|IGI  product CDC27a; binding  note CDC27a; FUNCTIONS IN: binding; INVOLVED IN: regulation of cell division, cell cycle, gamete generation, regulation of unidimensional cell growth; LOCATED IN: anaphase-promoting complex; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: HBT (HOBBIT); binding (TAIR:AT2G20000.1); Has 16438 Blast hits to 9148 proteins in 931 species: Archae - 1124; Bacteria - 6606; Metazoa - 1982; Fungi - 629; Plants - 337; Viruses - 0; Other Eukaryotes - 5760 (source: NCBI BLink).  protein_id AT3G16320.1p  transcript_id AT3G16320.1  protein_id AT3G16320.1p  transcript_id AT3G16320.1  
At3g16330	chr3:005535263	0.0	W/5535263-5535880	AT3G16330.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52140.1); Has 62 Blast hits to 62 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G16330.1p  transcript_id AT3G16330.1  protein_id AT3G16330.1p  transcript_id AT3G16330.1  
At3g16340	chr3:005539897	0.0	W/5539897-5540207,5540340-5540549,5540630-5540714,5540793-5540952,5541030-5541160,5541443-5541533,5541632-5541933,5542277-5542875,5542982-5543142,5543227-5543336,5543430-5543583,5543749-5543915,5543983-5544315,5544384-5544758,5544843-5544976,5545051-5545278,5545375-5545546,5545643-5545897,5545991-5546263	AT3G16340.1  CDS  gene_syn ATPDR1, PDR1, PLEIOTROPIC DRUG RESISTANCE 1  gene PDR1  go_component plasma membrane|GO:0005886|17317660|IDA  go_process multidrug transport|GO:0006855|16506311|ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product PDR1; ATPase, coupled to transmembrane movement of substances  note PDR1; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: multidrug transport; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525), Pleiotropic drug resistance protein PDR (InterPro:IPR005285); BEST Arabidopsis thaliana protein match is: PDR7 (PLEIOTROPIC DRUG RESISTANCE 7); ATPase, coupled to transmembrane movement of substances (TAIR:AT1G15210.1); Has 218271 Blast hits to 164349 proteins in 2520 species: Archae - 4503; Bacteria - 155155; Metazoa - 8597; Fungi - 4755; Plants - 3215; Viruses - 4; Other Eukaryotes - 42042 (source: NCBI BLink).  protein_id AT3G16340.1p  transcript_id AT3G16340.1  protein_id AT3G16340.1p  transcript_id AT3G16340.1  
At3g16350	chr3:005547828	0.0	W/5547828-5548233,5548551-5548762,5548852-5549397	AT3G16350.1  CDS  gene_syn T2O4.10  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 7 processes; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Zinc finger, CCHC-type (InterPro:IPR001878), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT5G47390.1); Has 2137 Blast hits to 1895 proteins in 207 species: Archae - 0; Bacteria - 110; Metazoa - 783; Fungi - 82; Plants - 935; Viruses - 13; Other Eukaryotes - 214 (source: NCBI BLink).  protein_id AT3G16350.1p  transcript_id AT3G16350.1  protein_id AT3G16350.1p  transcript_id AT3G16350.1  
At3g16360	chr3:005554484	0.0	W/5554484-5554641,5554715-5554783,5555018-5555089,5555283-5555367	AT3G16360.1  CDS  gene_syn AHP4, HPT PHOSPHOTRANSMITTER 4, T2O4.20  gene AHP4  function Encodes AHP4, a histidine-containing phosphotransmitter involved in Histidine (His)-to-Aspartate (Asp) phosphorelay signal transduction. AHP4 is one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).  go_component nucleus|GO:0005634|17122069|IDA  go_component cytoplasm|GO:0005737|17122069|IDA  go_process two-component signal transduction system (phosphorelay)|GO:0000160|11193423|ISS  go_process cytokinin mediated signaling|GO:0009736|17122069|IGI  go_process cytokinin mediated signaling|GO:0009736|17122069|IMP  go_function histidine phosphotransfer kinase activity|GO:0009927|10050311|IDA  go_function histidine phosphotransfer kinase activity|GO:0009927|11193423|ISS  go_function histidine phosphotransfer kinase activity|GO:0009927|17122069|ISS  go_function histidine phosphotransfer kinase activity|GO:0009927|9804162|IDA  go_function transferase activity, transferring phosphorus-containing groups|GO:0016772||ISS  product AHP4 (HPT PHOSPHOTRANSMITTER 4); histidine phosphotransfer kinase/ transferase, transferring phosphorus-containing groups  note HPT PHOSPHOTRANSMITTER 4 (AHP4); FUNCTIONS IN: transferase activity, transferring phosphorus-containing groups, histidine phosphotransfer kinase activity; INVOLVED IN: cytokinin mediated signaling, two-component signal transduction system (phosphorelay); LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, phosphotransfer (Hpt) region (InterPro:IPR008207); BEST Arabidopsis thaliana protein match is: AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1); histidine phosphotransfer kinase (TAIR:AT3G21510.1); Has 183 Blast hits to 182 proteins in 42 species: Archae - 0; Bacteria - 21; Metazoa - 0; Fungi - 22; Plants - 138; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G16360.1p  transcript_id AT3G16360.1  protein_id AT3G16360.1p  transcript_id AT3G16360.1  
At3g16370	chr3:005556928	0.0	W/5556928-5557171,5557252-5557382,5557476-5557709,5557795-5558050,5558155-5558351	AT3G16370.1  CDS  gene_syn T2O4.2  go_component apoplast|GO:0048046|18538804|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase, putative (TAIR:AT5G22810.1); Has 1979 Blast hits to 1962 proteins in 227 species: Archae - 0; Bacteria - 355; Metazoa - 1; Fungi - 24; Plants - 1578; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT3G16370.1p  transcript_id AT3G16370.1  protein_id AT3G16370.1p  transcript_id AT3G16370.1  
At3g16380	chr3:005560771	0.0	C/5560771-5560993,5560239-5560557,5559898-5560157,5559512-5559805,5559147-5559406,5558998-5559060,5558676-5558870	AT3G16380.1  CDS  gene_syn PAB6, POLY(A) BINDING PROTEIN 6, T2O4.4  gene PAB6  function polyadenylate-binding protein, putative / PABP, putative, similar to polyadenylate-binding protein (poly(A)-binding protein) from {Arabidopsis thaliana} SP:P42731, (Cucumis sativus) GI:7528270, {Homo sapiens} SP:Q13310, {Arabidopsis thaliana} SP:Q05196; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM). Member of the class III family of PABP proteins.  go_process translational initiation|GO:0006413|12586718|TAS  go_process mRNA metabolic process|GO:0016071|12586718|TAS  go_function RNA binding|GO:0003723||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product PAB6 (POLY(A) BINDING PROTEIN 6); RNA binding / translation initiation factor  note POLY(A) BINDING PROTEIN 6 (PAB6); FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: mRNA metabolic process, translational initiation; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: PAB2 (POLY(A) BINDING 2); RNA binding / translation initiation factor (TAIR:AT4G34110.1); Has 36856 Blast hits to 16014 proteins in 603 species: Archae - 26; Bacteria - 2042; Metazoa - 21941; Fungi - 3852; Plants - 4932; Viruses - 0; Other Eukaryotes - 4063 (source: NCBI BLink).  protein_id AT3G16380.1p  transcript_id AT3G16380.1  protein_id AT3G16380.1p  transcript_id AT3G16380.1  
At3g16390	chr3:005562602	0.0	W/5562602-5562796,5562893-5563162,5563418-5564356	AT3G16390.1  CDS  gene_syn NITRILE SPECIFIER PROTEIN 3, NSP3, T2O4.21  gene NSP3  function Encodes a nitrile-specifier protein NSP3. NSP3 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation.  go_component chloroplast|GO:0009507|18431481|IDA  go_process glucosinolate catabolic process|GO:0019762|18987211|IDA  go_process nitrile biosynthetic process|GO:0080028|18987211|IDA  go_function molecular_function|GO:0003674||ND  product NSP3 (NITRILE SPECIFIER PROTEIN 3)  note NITRILE SPECIFIER PROTEIN 3 (NSP3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: glucosinolate catabolic process, nitrile biosynthetic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Mannose-binding lectin (InterPro:IPR001229), Myrosinase-binding related, jacalin-like lectin (InterPro:IPR017388), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: NSP1 (NITRILE SPECIFIER PROTEIN 1) (TAIR:AT3G16400.2); Has 7892 Blast hits to 4645 proteins in 252 species: Archae - 10; Bacteria - 195; Metazoa - 5123; Fungi - 402; Plants - 1272; Viruses - 26; Other Eukaryotes - 864 (source: NCBI BLink).  protein_id AT3G16390.1p  transcript_id AT3G16390.1  protein_id AT3G16390.1p  transcript_id AT3G16390.1  
At3g16400	chr3:005566516	0.0	W/5566516-5566710,5566863-5567132,5567383-5568330	AT3G16400.1  CDS  gene_syn ATMLP-470, ATNSP1, MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-470, NITRILE SPECIFIER PROTEIN 1, NSP1, T2O4.9  gene NSP1  function Encodes a nitrile-specifier protein NSP1 responsible for constitutive and herbivore-induced simple nitrile formation in rosette leaves. NSP1 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation.  go_component cellular_component|GO:0005575||ND  go_process glucosinolate catabolic process|GO:0019762|18987211|IDA  go_process response to herbivore|GO:0080027|18987211|IMP  go_process nitrile biosynthetic process|GO:0080028|18987211|IDA  go_function molecular_function|GO:0003674||ND  product NSP1 (NITRILE SPECIFIER PROTEIN 1)  note NITRILE SPECIFIER PROTEIN 1 (NSP1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: glucosinolate catabolic process, response to herbivore, nitrile biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: rosette leaf, cotyledon, guard cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Mannose-binding lectin (InterPro:IPR001229), Myrosinase-binding related, jacalin-like lectin (InterPro:IPR017388), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: NSP4 (NITRILE SPECIFIER PROTEIN 4) (TAIR:AT3G16410.1); Has 9629 Blast hits to 5095 proteins in 263 species: Archae - 13; Bacteria - 236; Metazoa - 6389; Fungi - 499; Plants - 1332; Viruses - 40; Other Eukaryotes - 1120 (source: NCBI BLink).  protein_id AT3G16400.1p  transcript_id AT3G16400.1  protein_id AT3G16400.1p  transcript_id AT3G16400.1  
At3g16400	chr3:005566516	0.0	W/5566516-5566710,5566863-5567132,5567383-5568330	AT3G16400.2  CDS  gene_syn ATMLP-470, ATNSP1, MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-470, NITRILE SPECIFIER PROTEIN 1, NSP1, T2O4.9  gene NSP1  function Encodes a nitrile-specifier protein NSP1 responsible for constitutive and herbivore-induced simple nitrile formation in rosette leaves. NSP1 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation.  go_component cellular_component|GO:0005575||ND  go_process glucosinolate catabolic process|GO:0019762|18987211|IDA  go_process response to herbivore|GO:0080027|18987211|IMP  go_process nitrile biosynthetic process|GO:0080028|18987211|IDA  go_function molecular_function|GO:0003674||ND  product NSP1 (NITRILE SPECIFIER PROTEIN 1)  note MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-470 (ATMLP-470); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: glucosinolate catabolic process, response to herbivore, nitrile biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: rosette leaf, cotyledon, guard cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Mannose-binding lectin (InterPro:IPR001229), Myrosinase-binding related, jacalin-like lectin (InterPro:IPR017388), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: NSP4 (NITRILE SPECIFIER PROTEIN 4) (TAIR:AT3G16410.1); Has 9629 Blast hits to 5095 proteins in 263 species: Archae - 13; Bacteria - 236; Metazoa - 6389; Fungi - 499; Plants - 1332; Viruses - 40; Other Eukaryotes - 1120 (source: NCBI BLink).  protein_id AT3G16400.2p  transcript_id AT3G16400.2  protein_id AT3G16400.2p  transcript_id AT3G16400.2  
At3g16410	chr3:005572145	0.0	W/5572145-5572345,5572501-5572941,5573044-5573313,5573412-5574359	AT3G16410.1  CDS  gene_syn NITRILE SPECIFIER PROTEIN 4, NSP4, T2O4.17  gene NSP4  function Encodes a nitrile-specifier protein NSP4. NSP4 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation.  go_component cellular_component|GO:0005575||ND  go_process glucosinolate catabolic process|GO:0019762|18987211|IDA  go_process nitrile biosynthetic process|GO:0080028|18987211|IDA  go_function molecular_function|GO:0003674||ND  product NSP4 (NITRILE SPECIFIER PROTEIN 4)  note NITRILE SPECIFIER PROTEIN 4 (NSP4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: glucosinolate catabolic process, nitrile biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Mannose-binding lectin (InterPro:IPR001229), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: NSP1 (NITRILE SPECIFIER PROTEIN 1) (TAIR:AT3G16400.2); Has 9986 Blast hits to 5322 proteins in 273 species: Archae - 15; Bacteria - 210; Metazoa - 6379; Fungi - 489; Plants - 1758; Viruses - 39; Other Eukaryotes - 1096 (source: NCBI BLink).  protein_id AT3G16410.1p  transcript_id AT3G16410.1  protein_id AT3G16410.1p  transcript_id AT3G16410.1  
At3g16415	chr3:005575407	0.0	W/5575407-5577101	AT3G16415.1  pseudogenic_transcript  pseudo  gene_syn T2O4.18  note pseudogene, similar to myrosinase-binding protein related protein, blastp match of 48% identity and 5.8e-85 P-value to GP|1655830|gb|AAC08051.1||U59446 myrosinase-binding protein related protein {Brassica napus}  
At3g16420	chr3:005579560	0.0	W/5579560-5579760,5579858-5580301,5580423-5580674	AT3G16420.1  CDS  gene_syn JACALIN-RELATED LECTIN 30, JAL30, PBP1, PYK10-BINDING PROTEIN 1, T2O4.12  gene PBP1  function The PBP1(PYK10-binding protein 1) assists the PYK10 (beta-glucosidase complex) in its activity and may act like a molecular chaperone that facilitates the correct polymerization of PYK10, when tissues are damaged and subcellular structures are destroyed by pests.  go_component nucleus|GO:0005634|14617066|IDA  go_component cytosol|GO:0005829|15919674|IDA  go_process protein folding|GO:0006457|15919674|TAS  go_function copper ion binding|GO:0005507|16526091|IDA  product PBP1 (PYK10-BINDING PROTEIN 1); copper ion binding  note PYK10-BINDING PROTEIN 1 (PBP1); FUNCTIONS IN: copper ion binding; INVOLVED IN: protein folding; LOCATED IN: cytosol, nucleus; EXPRESSED IN: root, seed, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: JAL31 (JACALIN-RELATED LECTIN 31); copper ion binding (TAIR:AT3G16430.2); Has 1087 Blast hits to 516 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1085; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G16420.1p  transcript_id AT3G16420.1  protein_id AT3G16420.1p  transcript_id AT3G16420.1  
At3g16420	chr3:005579560	0.0	W/5579560-5579760,5579858-5580301,5580423-5580674	AT3G16420.2  CDS  gene_syn JACALIN-RELATED LECTIN 30, JAL30, PBP1, PYK10-BINDING PROTEIN 1, T2O4.12  gene PBP1  function The PBP1(PYK10-binding protein 1) assists the PYK10 (beta-glucosidase complex) in its activity and may act like a molecular chaperone that facilitates the correct polymerization of PYK10, when tissues are damaged and subcellular structures are destroyed by pests.  go_component nucleus|GO:0005634|14617066|IDA  go_function copper ion binding|GO:0005507|16526091|IDA  product PBP1 (PYK10-BINDING PROTEIN 1); copper ion binding  note PYK10-BINDING PROTEIN 1 (PBP1); FUNCTIONS IN: copper ion binding; LOCATED IN: nucleus; EXPRESSED IN: root, seed, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: JAL31 (JACALIN-RELATED LECTIN 31); copper ion binding (TAIR:AT3G16430.2); Has 1087 Blast hits to 516 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1085; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G16420.2p  transcript_id AT3G16420.2  protein_id AT3G16420.2p  transcript_id AT3G16420.2  
At3g16420	chr3:005579560	0.0	W/5579560-5579760,5579858-5580301,5580423-5580674	AT3G16420.3  CDS  gene_syn JACALIN-RELATED LECTIN 30, JAL30, PBP1, PYK10-BINDING PROTEIN 1, T2O4.12  gene PBP1  function The PBP1(PYK10-binding protein 1) assists the PYK10 (beta-glucosidase complex) in its activity and may act like a molecular chaperone that facilitates the correct polymerization of PYK10, when tissues are damaged and subcellular structures are destroyed by pests.  go_function copper ion binding|GO:0005507|16526091|IDA  product PBP1 (PYK10-BINDING PROTEIN 1); copper ion binding  note PYK10-BINDING PROTEIN 1 (PBP1); FUNCTIONS IN: copper ion binding; EXPRESSED IN: root, seed, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: JAL31 (JACALIN-RELATED LECTIN 31); copper ion binding (TAIR:AT3G16430.2); Has 1087 Blast hits to 516 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1085; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G16420.3p  transcript_id AT3G16420.3  protein_id AT3G16420.3p  transcript_id AT3G16420.3  
At3g16430	chr3:005581830	0.0	W/5581830-5582030,5582132-5582569,5582708-5582959	AT3G16430.1  CDS  gene_syn JACALIN-RELATED LECTIN 31, JAL31  gene JAL31  go_function copper ion binding|GO:0005507|16526091|IDA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product JAL31 (JACALIN-RELATED LECTIN 31); copper ion binding  note JACALIN-RELATED LECTIN 31 (JAL31); FUNCTIONS IN: copper ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: PBP1 (PYK10-BINDING PROTEIN 1); copper ion binding (TAIR:AT3G16420.3); Has 1046 Blast hits to 511 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1045; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G16430.1p  transcript_id AT3G16430.1  protein_id AT3G16430.1p  transcript_id AT3G16430.1  
At3g16430	chr3:005581830	0.0	W/5581830-5582030,5582132-5582569,5582708-5582959	AT3G16430.2  CDS  gene_syn JACALIN-RELATED LECTIN 31, JAL31  gene JAL31  go_function copper ion binding|GO:0005507|16526091|IDA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product JAL31 (JACALIN-RELATED LECTIN 31); copper ion binding  note JACALIN-RELATED LECTIN 31 (JAL31); FUNCTIONS IN: copper ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: PBP1 (PYK10-BINDING PROTEIN 1); copper ion binding (TAIR:AT3G16420.3); Has 1046 Blast hits to 511 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1045; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G16430.2p  transcript_id AT3G16430.2  protein_id AT3G16430.2p  transcript_id AT3G16430.2  
At3g16432	chr3:005583943	0.0	W/5583943-5584128	AT3G16432.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G16432.1p  transcript_id AT3G16432.1  protein_id AT3G16432.1p  transcript_id AT3G16432.1  
At3g16440	chr3:005586087	0.0	W/5586087-5586281,5586612-5587067,5587290-5587541	AT3G16440.1  CDS  gene_syn ATMLP-300B, MEE36, MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-300B, T2O4.19, maternal effect embryo arrest 36  gene ATMLP-300B  function myrosinase-binding protein-like protein (AtMLP-300B) mRNA,  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function molecular_function|GO:0003674||ND  product ATMLP-300B (MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-300B)  note MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-300B (ATMLP-300B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin lectin family protein (TAIR:AT3G16450.3); Has 1157 Blast hits to 514 proteins in 40 species: Archae - 0; Bacteria - 24; Metazoa - 0; Fungi - 0; Plants - 1130; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G16440.1p  transcript_id AT3G16440.1  protein_id AT3G16440.1p  transcript_id AT3G16440.1  
At3g16450	chr3:005588593	0.0	W/5588593-5588787,5588972-5589427,5589541-5589792	AT3G16450.1  CDS  gene_syn T2O4.11  go_component nucleus|GO:0005634|14617066|IDA  go_process response to cold|GO:0009409|14617066|IEP  go_function molecular_function|GO:0003674||ND  product jacalin lectin family protein  note jacalin lectin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cold; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.04 four leaves visible, seedling growth; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: ATMLP-300B (MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-300B) (TAIR:AT3G16440.1); Has 1134 Blast hits to 522 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1131; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G16450.1p  transcript_id AT3G16450.1  protein_id AT3G16450.1p  transcript_id AT3G16450.1  
At3g16450	chr3:005588593	0.0	W/5588593-5588787,5588972-5589427,5589541-5589792	AT3G16450.2  CDS  gene_syn T2O4.11  go_component nucleus|GO:0005634|14617066|IDA  go_process response to cold|GO:0009409|14617066|IEP  go_function molecular_function|GO:0003674||ND  product jacalin lectin family protein  note jacalin lectin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cold; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.04 four leaves visible, seedling growth; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: ATMLP-300B (MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-300B) (TAIR:AT3G16440.1); Has 1134 Blast hits to 522 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1131; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G16450.2p  transcript_id AT3G16450.2  protein_id AT3G16450.2p  transcript_id AT3G16450.2  
At3g16450	chr3:005588593	0.0	W/5588593-5588787,5588972-5589427,5589541-5589792	AT3G16450.3  CDS  gene_syn T2O4.11  go_process response to cold|GO:0009409|14617066|IEP  go_function molecular_function|GO:0003674||ND  product jacalin lectin family protein  note jacalin lectin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cold; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.04 four leaves visible, seedling growth; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: ATMLP-300B (MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-300B) (TAIR:AT3G16440.1); Has 1134 Blast hits to 522 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1131; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G16450.3p  transcript_id AT3G16450.3  protein_id AT3G16450.3p  transcript_id AT3G16450.3  
At3g16460	chr3:005593029	0.0	W/5593029-5593175,5593279-5594085,5594183-5594635,5594718-5595179,5595274-5595522	AT3G16460.1  CDS  gene_syn T2O4.14  go_component nucleus|GO:0005634|14617066|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function copper ion binding|GO:0005507|16526091|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process response to cold|GO:0009409|14617066|IEP  product jacalin lectin family protein  note jacalin lectin family protein; FUNCTIONS IN: copper ion binding; INVOLVED IN: response to cold; LOCATED IN: cytosol, nucleus, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: MBP1 (MYROSINASE-BINDING PROTEIN 1); protein binding (TAIR:AT1G52040.1); Has 131260 Blast hits to 34126 proteins in 1746 species: Archae - 331; Bacteria - 48540; Metazoa - 26646; Fungi - 8505; Plants - 10521; Viruses - 2266; Other Eukaryotes - 34451 (source: NCBI BLink).  protein_id AT3G16460.1p  transcript_id AT3G16460.1  protein_id AT3G16460.1p  transcript_id AT3G16460.1  
At3g16460	chr3:005593029	0.0	W/5593029-5593175,5593279-5594085,5594183-5594635,5594718-5595179,5595274-5595522	AT3G16460.2  CDS  gene_syn T2O4.14  go_component membrane|GO:0016020|17432890|IDA  go_function copper ion binding|GO:0005507|16526091|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process response to cold|GO:0009409|14617066|IEP  product jacalin lectin family protein  note jacalin lectin family protein; FUNCTIONS IN: copper ion binding; INVOLVED IN: response to cold; LOCATED IN: cytosol, nucleus, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: MBP1 (MYROSINASE-BINDING PROTEIN 1); protein binding (TAIR:AT1G52040.1); Has 131260 Blast hits to 34126 proteins in 1746 species: Archae - 331; Bacteria - 48540; Metazoa - 26646; Fungi - 8505; Plants - 10521; Viruses - 2266; Other Eukaryotes - 34451 (source: NCBI BLink).  protein_id AT3G16460.2p  transcript_id AT3G16460.2  protein_id AT3G16460.2p  transcript_id AT3G16460.2  
At3g16470	chr3:005597515	0.0	C/5597515-5597709,5596970-5597431,5596435-5596884,5596096-5596344	AT3G16470.1  CDS  gene_syn JASMONATE RESPONSIVE 1, JR1, T2O4.6  gene JR1  function JA-responsive gene  go_component nucleus|GO:0005634|14617066|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cold|GO:0009409|14617066|IEP  go_process response to wounding|GO:0009611|17675405|IEP  go_process response to wounding|GO:0009611|9648747|TAS  go_process response to jasmonic acid stimulus|GO:0009753|9648747|IEP  go_process response to jasmonic acid stimulus|GO:0009753||TAS  product JR1  note JR1; INVOLVED IN: response to jasmonic acid stimulus, response to salt stress, response to cold, response to wounding; LOCATED IN: chloroplast, nucleus, vacuole, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: MBP2 (MYROSINASE-BINDING PROTEIN 2); sugar binding / thioglucosidase binding (TAIR:AT1G52030.2); Has 1246 Blast hits to 544 proteins in 37 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1242; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G16470.1p  transcript_id AT3G16470.1  protein_id AT3G16470.1p  transcript_id AT3G16470.1  
At3g16470	chr3:005597515	0.0	C/5597515-5597709,5596970-5597431,5596435-5596884,5596096-5596344	AT3G16470.2  CDS  gene_syn JASMONATE RESPONSIVE 1, JR1, T2O4.6  gene JR1  function JA-responsive gene  go_component vacuole|GO:0005773|15539469|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cold|GO:0009409|14617066|IEP  go_process response to wounding|GO:0009611|17675405|IEP  go_process response to wounding|GO:0009611|9648747|TAS  go_process response to jasmonic acid stimulus|GO:0009753|9648747|IEP  go_process response to jasmonic acid stimulus|GO:0009753||TAS  product JR1  note JR1; INVOLVED IN: response to jasmonic acid stimulus, response to salt stress, response to cold, response to wounding; LOCATED IN: chloroplast, vacuole, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: MBP2 (MYROSINASE-BINDING PROTEIN 2); sugar binding / thioglucosidase binding (TAIR:AT1G52030.2); Has 1246 Blast hits to 544 proteins in 37 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1242; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G16470.2p  transcript_id AT3G16470.2  protein_id AT3G16470.2p  transcript_id AT3G16470.2  
At3g16480	chr3:005599906	0.0	W/5599906-5599944,5600234-5600467,5600550-5600846,5600933-5601100,5601212-5601379,5601469-5601546,5601620-5601686,5601808-5601905,5601995-5602064,5602154-5602224,5602310-5602359,5602453-5602565,5602670-5602716	AT3G16480.1  CDS  gene_syn MPPalpha, T2O4.13, mitochondrial processing peptidase alpha subunit  gene MPPalpha  go_component mitochondrion|GO:0005739|15276431|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process proteolysis|GO:0006508||IEA  go_function catalytic activity|GO:0003824||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function metal ion binding|GO:0046872||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|14730085|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component mitochondrial outer membrane|GO:0005741|14730085|IDA  go_component mitochondrial inner membrane|GO:0005743|14730085|IDA  go_component mitochondrial respiratory chain complex III|GO:0005750|18189341|IDA  go_component mitochondrial intermembrane space|GO:0005758|14730085|IDA  go_component mitochondrial matrix|GO:0005759|14730085|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process proteolysis|GO:0006508||ISS  go_function metalloendopeptidase activity|GO:0004222||ISS  product MPPalpha (mitochondrial processing peptidase alpha subunit); catalytic/ metal ion binding / metalloendopeptidase/ zinc ion binding  note mitochondrial processing peptidase alpha subunit (MPPalpha); FUNCTIONS IN: metalloendopeptidase activity, catalytic activity, zinc ion binding, metal ion binding; INVOLVED IN: proteolysis; LOCATED IN: in 8 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M16, zinc-binding site (InterPro:IPR001431), Peptidase M16, C-terminal (InterPro:IPR007863), Peptidase M16, N-terminal (InterPro:IPR011765), Metalloenzyme, LuxS/M16 peptidase-like, metal-binding (InterPro:IPR011249), Peptidase M16, core (InterPro:IPR011237); BEST Arabidopsis thaliana protein match is: mitochondrial processing peptidase alpha subunit, putative (TAIR:AT1G51980.1); Has 4301 Blast hits to 4224 proteins in 886 species: Archae - 10; Bacteria - 2091; Metazoa - 526; Fungi - 394; Plants - 137; Viruses - 3; Other Eukaryotes - 1140 (source: NCBI BLink).  protein_id AT3G16480.1p  transcript_id AT3G16480.1  protein_id AT3G16480.1p  transcript_id AT3G16480.1  
At3g16490	chr3:005605127	0.0	C/5605127-5605489,5604673-5604855,5603962-5604585	AT3G16490.1  CDS  gene_syn IQ-domain 26, IQD26  gene IQD26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product IQD26 (IQ-domain 26); calmodulin binding  note IQ-domain 26 (IQD26); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQD27 (IQ-domain 27); calmodulin binding (TAIR:AT1G51960.1); Has 408 Blast hits to 401 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 5; Plants - 398; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G16490.1p  transcript_id AT3G16490.1  protein_id AT3G16490.1p  transcript_id AT3G16490.1  
At3g16500	chr3:005613916	0.0	C/5613916-5614208,5613424-5613704,5613199-5613331,5612912-5612979,5612801-5612835	AT3G16500.1  CDS  gene_syn IAA26, INDOLE-3-ACETIC ACID 26, PAP1, PHYTOCHROME-ASSOCIATED PROTEIN 1  gene PAP1  function phytochrome-associated protein 1 (PAP1)  go_component nucleus|GO:0005634||IEA  go_process response to auxin stimulus|GO:0009733|12036262|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product PAP1 (PHYTOCHROME-ASSOCIATED PROTEIN 1); transcription factor  note PHYTOCHROME-ASSOCIATED PROTEIN 1 (PAP1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to auxin stimulus; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA18 (INDOLE-3-ACETIC ACID INDUCIBLE 18); transcription factor (TAIR:AT1G51950.1); Has 1199 Blast hits to 1197 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1199; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G16500.1p  transcript_id AT3G16500.1  protein_id AT3G16500.1p  transcript_id AT3G16500.1  
At3g16510	chr3:005617112	0.0	C/5617112-5618194	AT3G16510.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT4G15755.1); Has 20967 Blast hits to 13077 proteins in 656 species: Archae - 8; Bacteria - 1063; Metazoa - 8596; Fungi - 4170; Plants - 4469; Viruses - 443; Other Eukaryotes - 2218 (source: NCBI BLink).  protein_id AT3G16510.1p  transcript_id AT3G16510.1  protein_id AT3G16510.1p  transcript_id AT3G16510.1  
At3g16520	chr3:005619720	0.0	C/5619720-5620833,5619355-5619629	AT3G16520.3  CDS  gene_syn UDP-GLUCOSYL TRANSFERASE 88A1, UGT88A1  gene UGT88A1  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function quercetin 3-O-glucosyltransferase activity|GO:0080043|15352060|IDA  go_function quercetin 7-O-glucosyltransferase activity|GO:0080044|15352060|IDA  go_function quercetin 3 -O-glucosyltransferase activity|GO:0080045|15352060|IDA  go_function quercetin 4 -O-glucosyltransferase activity|GO:0080046|15352060|IDA  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-GLUCOSYL TRANSFERASE 88A1 (UGT88A1); FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT72B3 (UDP-GLUCOSYL TRANSFERASE 72B3); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT1G01420.1); Has 4707 Blast hits to 4683 proteins in 326 species: Archae - 0; Bacteria - 102; Metazoa - 1777; Fungi - 12; Plants - 2672; Viruses - 113; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT3G16520.3p  transcript_id AT3G16520.3  protein_id AT3G16520.3p  transcript_id AT3G16520.3  
At3g16520	chr3:005619720	0.0	C/5619720-5620833,5619408-5619629,5618807-5618826	AT3G16520.1  CDS  gene_syn UDP-GLUCOSYL TRANSFERASE 88A1, UGT88A1  gene UGT88A1  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function quercetin 3-O-glucosyltransferase activity|GO:0080043|15352060|IDA  go_function quercetin 7-O-glucosyltransferase activity|GO:0080044|15352060|IDA  go_function quercetin 3 -O-glucosyltransferase activity|GO:0080045|15352060|IDA  go_function quercetin 4 -O-glucosyltransferase activity|GO:0080046|15352060|IDA  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-GLUCOSYL TRANSFERASE 88A1 (UGT88A1); FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT72B3 (UDP-GLUCOSYL TRANSFERASE 72B3); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT1G01420.1); Has 4690 Blast hits to 4669 proteins in 325 species: Archae - 0; Bacteria - 100; Metazoa - 1769; Fungi - 12; Plants - 2665; Viruses - 113; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT3G16520.1p  transcript_id AT3G16520.1  protein_id AT3G16520.1p  transcript_id AT3G16520.1  
At3g16520	chr3:005619720	0.0	C/5619720-5620833,5619408-5619629,5618847-5618851	AT3G16520.2  CDS  gene_syn UDP-GLUCOSYL TRANSFERASE 88A1, UGT88A1  gene UGT88A1  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function quercetin 3-O-glucosyltransferase activity|GO:0080043|15352060|IDA  go_function quercetin 7-O-glucosyltransferase activity|GO:0080044|15352060|IDA  go_function quercetin 3 -O-glucosyltransferase activity|GO:0080045|15352060|IDA  go_function quercetin 4 -O-glucosyltransferase activity|GO:0080046|15352060|IDA  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-GLUCOSYL TRANSFERASE 88A1 (UGT88A1); FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT72B3 (UDP-GLUCOSYL TRANSFERASE 72B3); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT1G01420.1); Has 4690 Blast hits to 4669 proteins in 325 species: Archae - 0; Bacteria - 100; Metazoa - 1769; Fungi - 12; Plants - 2665; Viruses - 113; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT3G16520.2p  transcript_id AT3G16520.2  protein_id AT3G16520.2p  transcript_id AT3G16520.2  
At3g16530	chr3:005624586	0.0	C/5624586-5625416	AT3G16530.1  CDS  gene_syn MDC8.19  function Lectin like protein whose expression is induced upon treatment with chitin oligomers.  go_component cell wall|GO:0005618|15593128|IDA  go_component nucleus|GO:0005634|14617066|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function sugar binding|GO:0005529||IEA  go_process response to chitin|GO:0010200|15923325|IEP  go_function carbohydrate binding|GO:0030246||ISS  product legume lectin family protein  note legume lectin family protein; FUNCTIONS IN: carbohydrate binding, sugar binding; INVOLVED IN: response to chitin; LOCATED IN: apoplast, cell wall, nucleus, plant-type cell wall; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), L-type lectin, plant (InterPro:IPR016363); BEST Arabidopsis thaliana protein match is: legume lectin family protein (TAIR:AT3G15356.1); Has 1542 Blast hits to 1529 proteins in 115 species: Archae - 0; Bacteria - 18; Metazoa - 0; Fungi - 0; Plants - 1507; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT3G16530.1p  transcript_id AT3G16530.1  protein_id AT3G16530.1p  transcript_id AT3G16530.1  
At3g16540	chr3:005628449	0.0	C/5628449-5628857,5628135-5628377,5627817-5627991,5627443-5627702,5627238-5627365,5627040-5627153,5626752-5626802,5626290-5626577	AT3G16540.1  CDS  gene_syn DegP protease 11, DegP11  gene DegP11  function Encodes a putative DegP protease.  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_process proteolysis|GO:0006508||IEA  go_function catalytic activity|GO:0003824||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function protein binding|GO:0005515||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type peptidase activity|GO:0008236||ISS  product DegP11 (DegP protease 11); catalytic/ protein binding / serine-type endopeptidase/ serine-type peptidase  note DegP protease 11 (DegP11); FUNCTIONS IN: serine-type peptidase activity, protein binding, catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast thylakoid membrane; CONTAINS InterPro DOMAIN/s: Peptidase, trypsin-like serine and cysteine (InterPro:IPR009003), Serine endopeptidase DegP2 (InterPro:IPR015724), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1 and S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DEGP12 (DEGP PROTEASE 12); catalytic/ protein binding / serine-type endopeptidase/ serine-type peptidase (TAIR:AT3G16550.1); Has 5990 Blast hits to 5985 proteins in 1170 species: Archae - 44; Bacteria - 3799; Metazoa - 206; Fungi - 0; Plants - 142; Viruses - 2; Other Eukaryotes - 1797 (source: NCBI BLink).  protein_id AT3G16540.1p  transcript_id AT3G16540.1  protein_id AT3G16540.1p  transcript_id AT3G16540.1  
At3g16550	chr3:005632153	0.0	C/5632153-5632417,5631817-5632071,5631322-5631517,5630967-5631207,5630740-5630865,5630485-5630631,5630211-5630261,5629920-5630114	AT3G16550.1  CDS  gene_syn DEGP PROTEASE 12, DEGP12  gene DEGP12  function Encodes a putative DegP protease.  go_process proteolysis|GO:0006508||IEA  go_function catalytic activity|GO:0003824||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function protein binding|GO:0005515||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type peptidase activity|GO:0008236||ISS  product DEGP12 (DEGP PROTEASE 12); catalytic/ protein binding / serine-type endopeptidase/ serine-type peptidase  note DEGP PROTEASE 12 (DEGP12); FUNCTIONS IN: serine-type peptidase activity, protein binding, catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; CONTAINS InterPro DOMAIN/s: Peptidase, trypsin-like serine and cysteine (InterPro:IPR009003), Serine endopeptidase DegP2 (InterPro:IPR015724), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1 and S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DegP11 (DegP protease 11); catalytic/ protein binding / serine-type endopeptidase/ serine-type peptidase (TAIR:AT3G16540.1); Has 6071 Blast hits to 6065 proteins in 1177 species: Archae - 44; Bacteria - 3945; Metazoa - 167; Fungi - 4; Plants - 130; Viruses - 2; Other Eukaryotes - 1779 (source: NCBI BLink).  protein_id AT3G16550.1p  transcript_id AT3G16550.1  protein_id AT3G16550.1p  transcript_id AT3G16550.1  
At3g16552	chr3:005632852	0.0	W/5632852-5632924	AT3G16552.1  tRNA  gene_syn 60533.TRNA-LYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Lys (anticodon: CTT)  transcript_id AT3G16552.1  
At3g16555	chr3:005633426	0.0	W/5633426-5633737,5633805-5634542	AT3G16555.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51171.1); Has 503 Blast hits to 493 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 503; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G16555.1p  transcript_id AT3G16555.1  protein_id AT3G16555.1p  transcript_id AT3G16555.1  
At3g16560	chr3:005636614	0.0	C/5636614-5637702,5636268-5636532,5636051-5636178	AT3G16560.1  CDS  gene_syn MDC8.3  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C-related / PP2C-related  note protein phosphatase 2C-related / PP2C-related; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: PLL5; catalytic/ protein serine/threonine phosphatase (TAIR:AT1G07630.1); Has 3513 Blast hits to 3492 proteins in 225 species: Archae - 0; Bacteria - 26; Metazoa - 1174; Fungi - 399; Plants - 1200; Viruses - 5; Other Eukaryotes - 709 (source: NCBI BLink).  protein_id AT3G16560.1p  transcript_id AT3G16560.1  protein_id AT3G16560.1p  transcript_id AT3G16560.1  
At3g16565	chr3:005642592	0.0	C/5642592-5642675,5642366-5642512,5642142-5642254,5641649-5641741,5641446-5641548,5641284-5641358,5640703-5640798,5640531-5640581	AT3G16565.1  CDS  go_component cytoplasm|GO:0005737||IEA  go_process translation|GO:0006412||IEA  go_process alanyl-tRNA aminoacylation|GO:0006419||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function alanine-tRNA ligase activity|GO:0004813||IEA  go_function ATP binding|GO:0005524||IEA  product ATP binding / alanine-tRNA ligase/ nucleic acid binding / nucleotide binding  note ATP binding / alanine-tRNA ligase/ nucleic acid binding / nucleotide binding; FUNCTIONS IN: alanine-tRNA ligase activity, nucleotide binding, nucleic acid binding, ATP binding; INVOLVED IN: alanyl-tRNA aminoacylation, translation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Alanyl-tRNA synthetase, class IIc, N-terminal (InterPro:IPR018164), Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain (InterPro:IPR018163), Alanyl-tRNA synthetase, class IIc, conserved region (InterPro:IPR018165); BEST Arabidopsis thaliana protein match is: ALATS (ALANYL-TRNA SYNTHETASE); ATP binding / alanine-tRNA ligase/ ligase, forming aminoacyl-tRNA and related compounds / nucleic acid binding / nucleotide binding (TAIR:AT1G50200.1); Has 5784 Blast hits to 5784 proteins in 1519 species: Archae - 260; Bacteria - 3252; Metazoa - 301; Fungi - 157; Plants - 54; Viruses - 0; Other Eukaryotes - 1760 (source: NCBI BLink).  protein_id AT3G16565.1p  transcript_id AT3G16565.1  protein_id AT3G16565.1p  transcript_id AT3G16565.1  
At3g16565	chr3:005642592	0.0	C/5642592-5642675,5642366-5642512,5642142-5642254,5641649-5641741,5641446-5641548,5641284-5641358,5640703-5640798,5640531-5640590	AT3G16565.2  CDS  go_component cytoplasm|GO:0005737||IEA  go_process translation|GO:0006412||IEA  go_process alanyl-tRNA aminoacylation|GO:0006419||IEA  go_process tRNA aminoacylation|GO:0043039||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function alanine-tRNA ligase activity|GO:0004813||IEA  go_function ATP binding|GO:0005524||IEA  go_function ligase activity, forming aminoacyl-tRNA and related compounds|GO:0016876||IEA  product ATP binding / alanine-tRNA ligase/ ligase, forming aminoacyl-tRNA and related compounds / nucleic acid binding / nucleotide binding  note ATP binding / alanine-tRNA ligase/ ligase, forming aminoacyl-tRNA and related compounds / nucleic acid binding / nucleotide binding; FUNCTIONS IN: ligase activity, forming aminoacyl-tRNA and related compounds, alanine-tRNA ligase activity, nucleotide binding, ATP binding, nucleic acid binding; INVOLVED IN: alanyl-tRNA aminoacylation, tRNA aminoacylation, translation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Threonyl/alanyl tRNA synthetase, SAD (InterPro:IPR012947), Alanyl-tRNA synthetase, class IIc, N-terminal (InterPro:IPR018164), Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain (InterPro:IPR018163), Alanyl-tRNA synthetase, class IIc, conserved region (InterPro:IPR018165); BEST Arabidopsis thaliana protein match is: ALATS (ALANYL-TRNA SYNTHETASE); ATP binding / alanine-tRNA ligase/ ligase, forming aminoacyl-tRNA and related compounds / nucleic acid binding / nucleotide binding (TAIR:AT1G50200.1); Has 5883 Blast hits to 5883 proteins in 1528 species: Archae - 260; Bacteria - 3295; Metazoa - 305; Fungi - 155; Plants - 54; Viruses - 0; Other Eukaryotes - 1814 (source: NCBI BLink).  protein_id AT3G16565.2p  transcript_id AT3G16565.2  protein_id AT3G16565.2p  transcript_id AT3G16565.2  
At3g16570	chr3:005644748	0.0	W/5644748-5645164	AT3G16570.1  CDS  gene_syn RALFL23, ralf-like 23  gene RALFL23  function Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  go_component apoplast|GO:0048046|12611624|ISS  go_process cell-cell signaling|GO:0007267|12611624|ISS  go_function signal transducer activity|GO:0004871|12611624|TAS  product RALFL23 (ralf-like 23); signal transducer  note ralf-like 23 (RALFL23); FUNCTIONS IN: signal transducer activity; INVOLVED IN: cell-cell signaling; LOCATED IN: apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALFL33 (ralf-like 33); signal transducer (TAIR:AT4G15800.1); Has 152 Blast hits to 152 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 150; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G16570.1p  transcript_id AT3G16570.1  protein_id AT3G16570.1p  transcript_id AT3G16570.1  
At3g16580	chr3:005647577	0.0	C/5647577-5648725	AT3G16580.1  CDS  go_component vacuole|GO:0005773|14760709|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G14710.1); Has 659 Blast hits to 653 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 659; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G16580.1p  transcript_id AT3G16580.1  protein_id AT3G16580.1p  transcript_id AT3G16580.1  
At3g16590	chr3:005649932	0.0	C/5649932-5651056	AT3G16590.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G12170.1); Has 796 Blast hits to 777 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 794; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G16590.1p  transcript_id AT3G16590.1  protein_id AT3G16590.1p  transcript_id AT3G16590.1  
At3g16600	chr3:005655572	0.0	C/5655572-5655670,5655410-5655481,5655240-5655317,5654479-5655154,5654265-5654314,5653952-5654173,5653527-5653851,5653130-5653335,5652839-5653027	AT3G16600.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function DNA binding|GO:0003677||ISS  go_function helicase activity|GO:0004386||ISS  go_function protein binding|GO:0005515||ISS  go_function ATP binding|GO:0005524||ISS  go_function zinc ion binding|GO:0008270||ISS  product SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein  note SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; FUNCTIONS IN: in 6 functions; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein (TAIR:AT1G50410.1); Has 15442 Blast hits to 9956 proteins in 840 species: Archae - 59; Bacteria - 3197; Metazoa - 4789; Fungi - 3336; Plants - 1165; Viruses - 101; Other Eukaryotes - 2795 (source: NCBI BLink).  protein_id AT3G16600.1p  transcript_id AT3G16600.1  protein_id AT3G16600.1p  transcript_id AT3G16600.1  
At3g16610	chr3:005656371	0.0	C/5656371-5658335	AT3G16610.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, pedicel, flower, seed; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: CRR22 (CHLORORESPIRATORY REDUCTION22); endonuclease (TAIR:AT1G11290.1); Has 15276 Blast hits to 4787 proteins in 121 species: Archae - 0; Bacteria - 2; Metazoa - 84; Fungi - 46; Plants - 14839; Viruses - 0; Other Eukaryotes - 305 (source: NCBI BLink).  protein_id AT3G16610.1p  transcript_id AT3G16610.1  protein_id AT3G16610.1p  transcript_id AT3G16610.1  
At3g16620	chr3:005658469	0.0	C/5658469-5661738	AT3G16620.1  CDS  gene_syn ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, ATTOC120, TOC120, TRANSLOCON OUTER COMPLEX PROTEIN 120  gene TOC120  function component of TOC complex, plastid protein import machinery.  go_function GTP binding|GO:0005525||IEA  go_component chloroplast outer membrane|GO:0009707|10646606|IDA  go_component chloroplast outer membrane|GO:0009707||ISS  go_process protein targeting to chloroplast|GO:0045036|10646606|IDA  product ATTOC120; GTP binding  note ATTOC120; FUNCTIONS IN: GTP binding; INVOLVED IN: protein targeting to chloroplast; LOCATED IN: chloroplast outer membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chloroplast protein import component Toc86/159 (InterPro:IPR005690), AIG1 (InterPro:IPR006703); BEST Arabidopsis thaliana protein match is: TOC132 (MULTIMERIC TRANSLOCON COMPLEX IN THE OUTER ENVELOPE MEMBRANE 132); transmembrane receptor (TAIR:AT2G16640.1); Has 1844 Blast hits to 1587 proteins in 274 species: Archae - 6; Bacteria - 261; Metazoa - 667; Fungi - 178; Plants - 197; Viruses - 5; Other Eukaryotes - 530 (source: NCBI BLink).  protein_id AT3G16620.1p  transcript_id AT3G16620.1  protein_id AT3G16620.1p  transcript_id AT3G16620.1  
At3g16630	chr3:005667073	0.0	C/5667073-5667261,5666405-5666626,5665826-5666005,5665613-5665714,5665384-5665461,5665058-5665139,5664759-5664921,5664182-5664511,5663771-5663989,5663110-5663680,5662933-5662998,5662660-5662842	AT3G16630.1  CDS  gene_syn ATKINESIN-13A, KINESIN-13A  gene KINESIN-13A  function Kinesin-13A localized to entire Golgi stacks. Involved in trichome development.  go_component plasma membrane|GO:0005886|17317660|IDA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_component Golgi stack|GO:0005795|15574882|IDA  go_process trichome morphogenesis|GO:0010090|15574882|IMP  go_function microtubule motor activity|GO:0003777||ISS  product KINESIN-13A; ATP binding / microtubule motor  note KINESIN-13A; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: trichome morphogenesis; LOCATED IN: Golgi stack, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin motor family protein (TAIR:AT3G16060.1); Has 7415 Blast hits to 7170 proteins in 236 species: Archae - 2; Bacteria - 2; Metazoa - 3738; Fungi - 890; Plants - 888; Viruses - 0; Other Eukaryotes - 1895 (source: NCBI BLink).  protein_id AT3G16630.1p  transcript_id AT3G16630.1  protein_id AT3G16630.1p  transcript_id AT3G16630.1  
At3g16630	chr3:005667073	0.0	C/5667073-5667261,5666405-5666626,5665826-5666005,5665613-5665714,5665384-5665461,5665058-5665139,5664759-5664921,5664182-5664511,5663771-5663989,5663110-5663680,5662933-5662998,5662660-5662842	AT3G16630.2  CDS  gene_syn ATKINESIN-13A, KINESIN-13A  gene KINESIN-13A  function Kinesin-13A localized to entire Golgi stacks. Involved in trichome development.  go_component plasma membrane|GO:0005886|17317660|IDA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_component Golgi stack|GO:0005795|15574882|IDA  go_process trichome morphogenesis|GO:0010090|15574882|IMP  go_function microtubule motor activity|GO:0003777||ISS  product KINESIN-13A; ATP binding / microtubule motor  note KINESIN-13A; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: trichome morphogenesis; LOCATED IN: Golgi stack, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin motor family protein (TAIR:AT3G16060.1); Has 7415 Blast hits to 7170 proteins in 236 species: Archae - 2; Bacteria - 2; Metazoa - 3738; Fungi - 890; Plants - 888; Viruses - 0; Other Eukaryotes - 1895 (source: NCBI BLink).  protein_id AT3G16630.2p  transcript_id AT3G16630.2  protein_id AT3G16630.2p  transcript_id AT3G16630.2  
At3g16640	chr3:005670702	0.0	C/5670702-5670729,5670299-5670372,5669920-5670206,5669709-5669826	AT3G16640.1  CDS  gene_syn TCTP, TRANSLATIONALLY CONTROLLED TUMOR PROTEIN  gene TCTP  function Encodes a protein homologous to translationally controlled tumor protein (TCTP) from Drosophila. In flies, TCTP functions guanine nucleotide exchange factor in the TOR signaling pathway. TCTP is expressed throughout the plant with highest levels seen in meristematic regions of the shoot and root. Loss of function alleles are not transmitted through the male gametophyte due to defects in pollen tube growth. Hypomorphs, generated through RNAi, are dwarf and have smaller cells. These plants also have defects in lateral and primary root growth as well as root hair growth. The phenotypes are similar to TOR mutants suggesting that TCTP functions in the is pathway in Arabidopsis as well.  go_component nucleus|GO:0005634|14617066|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytoplasm|GO:0005737||ISS  go_process regulation of cell growth|GO:0001558|19060111|IMP  go_process pollen tube growth|GO:0009860|19060111|IMP  go_process auxin homeostasis|GO:0010252|19060111|IMP  go_process root development|GO:0048364|19060111|IMP  go_process lateral root development|GO:0048527|19060111|IMP  go_process root hair cell tip growth|GO:0048768|19060111|IMP  product TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)  note TRANSLATIONALLY CONTROLLED TUMOR PROTEIN (TCTP); INVOLVED IN: in 8 processes; LOCATED IN: in 6 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Translationally controlled tumour protein (InterPro:IPR018105), Translationally controlled tumour-associated TCTP (InterPro:IPR001983), Mss4/translationally controlled tumour-associated TCTP (InterPro:IPR011323), Translationally controlled tumour protein, conserved site (InterPro:IPR018103), Mss4-like (InterPro:IPR011057); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05540.1); Has 646 Blast hits to 646 proteins in 233 species: Archae - 0; Bacteria - 0; Metazoa - 349; Fungi - 110; Plants - 105; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT3G16640.1p  transcript_id AT3G16640.1  protein_id AT3G16640.1p  transcript_id AT3G16640.1  
At3g16650	chr3:005671133	0.0	W/5671133-5671263,5671376-5671400,5671747-5671849,5672115-5672196,5672354-5672419,5672642-5672726,5672862-5672954,5673139-5673202,5673316-5673401,5673503-5673604,5673706-5673786,5673919-5673979,5674078-5674144,5674224-5674301,5674447-5674511,5674646-5674723,5674934-5675106	AT3G16650.1  CDS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process response to salt stress|GO:0009651|11351099|IEP  go_function nucleotide binding|GO:0000166||ISS  product PP1/PP2A phosphatases pleiotropic regulator 2 (PRL2)  note PP1/PP2A phosphatases pleiotropic regulator 2 (PRL2); FUNCTIONS IN: nucleotide binding; INVOLVED IN: response to salt stress; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: PRL1 (PLEIOTROPIC REGULATORY LOCUS 1); basal transcription repressor/ nucleotide binding / protein binding (TAIR:AT4G15900.1); Has 58179 Blast hits to 24123 proteins in 639 species: Archae - 64; Bacteria - 6308; Metazoa - 27345; Fungi - 10914; Plants - 5200; Viruses - 0; Other Eukaryotes - 8348 (source: NCBI BLink).  protein_id AT3G16650.1p  transcript_id AT3G16650.1  protein_id AT3G16650.1p  transcript_id AT3G16650.1  
At3g16660	chr3:005676904	0.0	W/5676904-5677162,5677505-5677788	AT3G16660.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16670.1); Has 240 Blast hits to 177 proteins in 57 species: Archae - 0; Bacteria - 143; Metazoa - 38; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G16660.1p  transcript_id AT3G16660.1  protein_id AT3G16660.1p  transcript_id AT3G16660.1  
At3g16670	chr3:005681500	0.0	W/5681500-5681680,5681828-5682111	AT3G16670.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16660.1); Has 46 Blast hits to 46 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G16670.1p  transcript_id AT3G16670.1  protein_id AT3G16670.1p  transcript_id AT3G16670.1  
At3g16680	chr3:005683697	0.0	W/5683697-5683837,5683924-5684027,5684112-5684130	AT3G16680.1  CDS  go_component nucleus|GO:0005634||IEA  go_component endomembrane system|GO:0012505||IEA  go_process transcription|GO:0006350||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  product DNA binding / DNA-directed RNA polymerase  note DNA binding / DNA-directed RNA polymerase; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: RNA polymerase, Rpb5, N-terminal (InterPro:IPR005571), RNA polymerase, subunit H/Rpb5 C-terminal (InterPro:IPR000783); BEST Arabidopsis thaliana protein match is: NRPB5; DNA binding / DNA-directed RNA polymerase (TAIR:AT3G22320.1); Has 321 Blast hits to 321 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 120; Fungi - 106; Plants - 54; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT3G16680.1p  transcript_id AT3G16680.1  protein_id AT3G16680.1p  transcript_id AT3G16680.1  
At3g16690	chr3:005686392	0.0	C/5686392-5686425,5686239-5686275,5685924-5686134,5685403-5685567,5684787-5684906,5684563-5684688	AT3G16690.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  product nodulin MtN3 family protein  note nodulin MtN3 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: MtN3 and saliva related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), MtN3 and saliva related transmembrane protein (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G15920.1); Has 542 Blast hits to 523 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 187; Fungi - 0; Plants - 301; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT3G16690.1p  transcript_id AT3G16690.1  protein_id AT3G16690.1p  transcript_id AT3G16690.1  
At3g16700	chr3:005687809	0.0	W/5687809-5687916,5688065-5688230,5688439-5688491,5688827-5688889,5689216-5689266,5689331-5689448,5689549-5689664	AT3G16700.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function catalytic activity|GO:0003824||ISS  product fumarylacetoacetate hydrolase family protein  note fumarylacetoacetate hydrolase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Fumarylacetoacetase, C-terminal-like (InterPro:IPR002529), Fumarylacetoacetase, C-terminal-related (InterPro:IPR011234); BEST Arabidopsis thaliana protein match is: fumarylacetoacetate hydrolase family protein (TAIR:AT4G15940.1); Has 7547 Blast hits to 7448 proteins in 1055 species: Archae - 132; Bacteria - 3815; Metazoa - 259; Fungi - 271; Plants - 44; Viruses - 0; Other Eukaryotes - 3026 (source: NCBI BLink).  protein_id AT3G16700.1p  transcript_id AT3G16700.1  protein_id AT3G16700.1p  transcript_id AT3G16700.1  
At3g16700	chr3:005687809	0.0	W/5687809-5687916,5688065-5688230,5688439-5688491,5688827-5688889,5689216-5689338	AT3G16700.2  CDS  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function catalytic activity|GO:0003824||ISS  product fumarylacetoacetate hydrolase family protein  note fumarylacetoacetate hydrolase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Fumarylacetoacetase, C-terminal-like (InterPro:IPR002529), Fumarylacetoacetase, C-terminal-related (InterPro:IPR011234); BEST Arabidopsis thaliana protein match is: fumarylacetoacetate hydrolase family protein (TAIR:AT4G15940.1); Has 6484 Blast hits to 6395 proteins in 1029 species: Archae - 118; Bacteria - 3575; Metazoa - 247; Fungi - 263; Plants - 36; Viruses - 0; Other Eukaryotes - 2245 (source: NCBI BLink).  protein_id AT3G16700.2p  transcript_id AT3G16700.2  protein_id AT3G16700.2p  transcript_id AT3G16700.2  
At3g16710	chr3:005690020	0.0	W/5690020-5691543	AT3G16710.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.10 ten leaves visible, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G41170.1); Has 25882 Blast hits to 6002 proteins in 187 species: Archae - 3; Bacteria - 22; Metazoa - 744; Fungi - 522; Plants - 23419; Viruses - 0; Other Eukaryotes - 1172 (source: NCBI BLink).  protein_id AT3G16710.1p  transcript_id AT3G16710.1  protein_id AT3G16710.1p  transcript_id AT3G16710.1  
At3g16712	chr3:005691801	0.0	C/5691801-5692016	AT3G16712.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G16712.1p  transcript_id AT3G16712.1  protein_id AT3G16712.1p  transcript_id AT3G16712.1  
At3g16720	chr3:005692880	0.0	W/5692880-5693794	AT3G16720.1  CDS  gene_syn ARABIDOPSIS TOXICOS EN LEVADURA 2, ATL2  gene ATL2  function RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations.  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process defense response|GO:0006952|10480382|IDA  go_process response to chitin|GO:0010200|17722694|IEP  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product ATL2; protein binding / zinc ion binding  note ATL2; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: response to chitin, defense response; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G15975.1); Has 6548 Blast hits to 6529 proteins in 234 species: Archae - 0; Bacteria - 2; Metazoa - 2210; Fungi - 555; Plants - 2731; Viruses - 76; Other Eukaryotes - 974 (source: NCBI BLink).  protein_id AT3G16720.1p  transcript_id AT3G16720.1  protein_id AT3G16720.1p  transcript_id AT3G16720.1  
At3g16730	chr3:005698677	0.0	C/5698677-5698863,5698477-5698576,5698007-5698113,5697779-5697921,5697263-5697692,5696991-5697163,5696743-5696916,5696567-5696665,5696342-5696443,5696088-5696243,5695633-5696013	AT3G16730.1  CDS  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1032 (InterPro:IPR009378); Has 205 Blast hits to 173 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 138; Fungi - 5; Plants - 12; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT3G16730.1p  transcript_id AT3G16730.1  protein_id AT3G16730.1p  transcript_id AT3G16730.1  
At3g16740	chr3:005699476	0.0	W/5699476-5700651	AT3G16740.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G18780.1); Has 799 Blast hits to 770 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 797; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G16740.1p  transcript_id AT3G16740.1  protein_id AT3G16740.1p  transcript_id AT3G16740.1  
At3g16750	chr3:005701977	0.0	C/5701977-5702013,5701471-5701777,5701145-5701385	AT3G16750.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 4694 Blast hits to 1384 proteins in 164 species: Archae - 36; Bacteria - 1175; Metazoa - 1347; Fungi - 379; Plants - 64; Viruses - 23; Other Eukaryotes - 1670 (source: NCBI BLink).  protein_id AT3G16750.1p  transcript_id AT3G16750.1  protein_id AT3G16750.1p  transcript_id AT3G16750.1  
At3g16760	chr3:005703213	0.0	W/5703213-5704311,5704369-5704466,5704907-5705080	AT3G16760.2  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_function binding|GO:0005488||IEA  product tetratricopeptide repeat (TPR)-containing protein  note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: atToc64-III (Arabidopsis thaliana translocon at the outer membrane of chloroplasts 64-III); binding / carbon-nitrogen ligase, with glutamine as amido-N-donor (TAIR:AT3G17970.1); Has 14024 Blast hits to 7119 proteins in 597 species: Archae - 20; Bacteria - 3632; Metazoa - 3836; Fungi - 1559; Plants - 721; Viruses - 41; Other Eukaryotes - 4215 (source: NCBI BLink).  protein_id AT3G16760.2p  transcript_id AT3G16760.2  protein_id AT3G16760.2p  transcript_id AT3G16760.2  
At3g16760	chr3:005703213	0.0	W/5703213-5704466,5704907-5705080	AT3G16760.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_function binding|GO:0005488||IEA  product tetratricopeptide repeat (TPR)-containing protein  note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: atToc64-III (Arabidopsis thaliana translocon at the outer membrane of chloroplasts 64-III); binding / carbon-nitrogen ligase, with glutamine as amido-N-donor (TAIR:AT3G17970.1); Has 14532 Blast hits to 7522 proteins in 612 species: Archae - 34; Bacteria - 3553; Metazoa - 4101; Fungi - 1619; Plants - 751; Viruses - 43; Other Eukaryotes - 4431 (source: NCBI BLink).  protein_id AT3G16760.1p  transcript_id AT3G16760.1  protein_id AT3G16760.1p  transcript_id AT3G16760.1  
At3g16770	chr3:005705784	0.0	W/5705784-5705943,5706182-5706768	AT3G16770.1  CDS  gene_syn ATEBP, ERF72, ETHYLENE RESPONSE FACTOR 72, ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN, MGL6.1, RAP2.3, RELATED TO AP2 3  gene ATEBP  function Encodes a member of the ERF (ethylene response factor) subfamily B-2 of the plant specific ERF/AP2 transcription factor family (RAP2.3). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.It is localized to the nucleus and acts as a transcriptional activator through the GCC-box. It has been identified as a suppressor of Bax-induced cell death by functional screening in yeast and can also suppress Bax-induced cell death in tobacco plants. Overexpression of this gene in tobacco BY-2 cells confers resistance to H2O2 and heat stresses. Overexpression in Arabidopsis causes upregulation of PDF1.2 and GST6. It is part of the ethylene signaling pathway and is predicted to act downstream of EIN2 and CTR1, but not under EIN3.  go_component nucleus|GO:0005634|15980186|IDA  go_component nucleus|GO:0005634|9159183|TAS  go_process response to stress|GO:0006950|15980186|IMP  go_process cell death|GO:0008219|15980186|IMP  go_process response to ethylene stimulus|GO:0009723|9159183|IEP  go_process response to cytokinin stimulus|GO:0009735|16212609|IEP  go_process ethylene mediated signaling pathway|GO:0009873|9159183|TAS  go_process response to other organism|GO:0051707|10571872|IEP  go_function DNA binding|GO:0003677|9159183|IDA  go_function DNA binding|GO:0003677|9192694|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|10571872|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|15980186|IDA  go_function transcription factor activity|GO:0003700|9159183|TAS  go_function transcription factor activity|GO:0003700|9192694|TAS  go_function transcription factor activity|GO:0003700||ISS  go_function protein binding|GO:0005515|15980186|TAS  go_function transcription activator activity|GO:0016563|15980186|IDA  product ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN); DNA binding / protein binding / transcription activator/ transcription factor  note ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN (ATEBP); FUNCTIONS IN: protein binding, transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: RAP2.12; DNA binding / transcription factor (TAIR:AT1G53910.3); Has 3878 Blast hits to 3737 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3861; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT3G16770.1p  transcript_id AT3G16770.1  protein_id AT3G16770.1p  transcript_id AT3G16770.1  
At3g16780	chr3:005708982	0.0	W/5708982-5709093,5709460-5709582,5709678-5709991,5710078-5710130,5710222-5710249	AT3G16780.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L19 (RPL19B)  note 60S ribosomal protein L19 (RPL19B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, ribosome, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L19/L19e (InterPro:IPR000196), Ribosomal protein L19/L19e, domain 3 (InterPro:IPR015974), Ribosomal protein L19/L19e, domain 1 (InterPro:IPR015972); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L19 (RPL19C) (TAIR:AT4G02230.1); Has 848 Blast hits to 848 proteins in 295 species: Archae - 206; Bacteria - 0; Metazoa - 265; Fungi - 106; Plants - 93; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink).  protein_id AT3G16780.1p  transcript_id AT3G16780.1  protein_id AT3G16780.1p  transcript_id AT3G16780.1  
At3g16785	chr3:005711329	0.0	W/5711329-5711568,5711886-5711987,5712123-5712229,5712335-5712473,5712703-5712876,5713364-5713537,5713958-5714200,5714285-5714401,5714547-5714686,5714851-5715000,5715206-5715362,5715443-5715922,5716112-5716222,5716789-5716935,5717022-5717219,5717373-5717474,5717751-5717882,5718111-5718176,5718256-5718317,5718447-5718696	AT3G16785.1  CDS  gene_syn PHOSPHOLIPASE D, PHOSPHOLIPASE D P1, PHOSPHOLIPASE D ZETA 1, PHOSPHOLIPASE D ZETA1, PLD ZETA 1, PLDP1, PLDZ1, PLDZETA1  gene PLDP1  function Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins. This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains. Involved regulating root development in response to nutrient limitation. Does not appear to be involved in root hair patterning. Not induced upon Pi starvation.  go_process cellular response to phosphate starvation|GO:0016036|16617110|IEP  go_process root development|GO:0048364|16384909|IGI  go_function phospholipase D activity|GO:0004630|11891260|TAS  go_function phospholipase D activity|GO:0004630||ISS  product PLDP1 (PHOSPHOLIPASE D P1); phospholipase D  note PHOSPHOLIPASE D P1 (PLDP1); FUNCTIONS IN: phospholipase D activity; INVOLVED IN: cellular response to phosphate starvation, root development; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase D, eukaryota (InterPro:IPR016555), Pleckstrin homology-type (InterPro:IPR011993), Phospholipase D (InterPro:IPR015679), Phox-like (InterPro:IPR001683), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: PLDP2; phospholipase D (TAIR:AT3G05630.1); Has 2203 Blast hits to 1241 proteins in 381 species: Archae - 0; Bacteria - 676; Metazoa - 443; Fungi - 475; Plants - 519; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT3G16785.1p  transcript_id AT3G16785.1  protein_id AT3G16785.1p  transcript_id AT3G16785.1  
At3g16800	chr3:005721294	0.0	W/5721294-5721542,5721742-5722029,5722212-5722332,5722430-5722653,5722750-5722923	AT3G16800.1  CDS  go_function catalytic activity|GO:0003824||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT3G05640.2); Has 3956 Blast hits to 3951 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 1239; Fungi - 491; Plants - 1305; Viruses - 5; Other Eukaryotes - 916 (source: NCBI BLink).  protein_id AT3G16800.1p  transcript_id AT3G16800.1  protein_id AT3G16800.1p  transcript_id AT3G16800.1  
At3g16800	chr3:005721294	0.0	W/5721294-5721542,5721742-5722029,5722212-5722332,5722430-5722653,5722750-5722923	AT3G16800.2  CDS  go_function catalytic activity|GO:0003824||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT3G05640.2); Has 3956 Blast hits to 3951 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 1239; Fungi - 491; Plants - 1305; Viruses - 5; Other Eukaryotes - 916 (source: NCBI BLink).  protein_id AT3G16800.2p  transcript_id AT3G16800.2  protein_id AT3G16800.2p  transcript_id AT3G16800.2  
At3g16800	chr3:005721294	0.0	W/5721294-5721542,5721742-5722029,5722212-5722332,5722430-5722719	AT3G16800.3  CDS  go_function catalytic activity|GO:0003824||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C, N-terminal (InterPro:IPR014045), Protein phosphatase 2C (InterPro:IPR015655); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT3G05640.2); Has 3175 Blast hits to 3174 proteins in 211 species: Archae - 0; Bacteria - 0; Metazoa - 981; Fungi - 308; Plants - 1079; Viruses - 5; Other Eukaryotes - 802 (source: NCBI BLink).  protein_id AT3G16800.3p  transcript_id AT3G16800.3  protein_id AT3G16800.3p  transcript_id AT3G16800.3  
At3g16810	chr3:005727327	0.0	C/5727327-5727539,5727185-5727238,5727039-5727100,5726865-5726946,5726649-5726772,5726492-5726575,5726272-5726386,5725910-5726060,5725688-5725801,5725327-5725398,5725168-5725218,5725032-5725082,5724749-5724856,5724449-5724637,5724266-5724340,5723680-5723933,5723436-5723562	AT3G16810.1  CDS  gene_syn APUM24, Arabidopsis Pumilio 24  gene APUM24  go_component nucleolus|GO:0005730|15496452|IDA  go_function RNA binding|GO:0003723||IEA  go_function binding|GO:0005488||IEA  go_function RNA binding|GO:0003723||ISS  product APUM24 (Arabidopsis Pumilio 24); RNA binding / binding  note Arabidopsis Pumilio 24 (APUM24); FUNCTIONS IN: RNA binding, binding; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding region (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: APUM5 (Arabidopsis Pumilio 5); RNA binding / binding (TAIR:AT3G20250.1); Has 1729 Blast hits to 925 proteins in 171 species: Archae - 0; Bacteria - 1; Metazoa - 1021; Fungi - 301; Plants - 205; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink).  protein_id AT3G16810.1p  transcript_id AT3G16810.1  protein_id AT3G16810.1p  transcript_id AT3G16810.1  
At3g16820	chr3:005728868	0.0	C/5728868-5729174,5728016-5728650	AT3G16820.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G16740.1); Has 634 Blast hits to 509 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 634; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G16820.1p  transcript_id AT3G16820.1  protein_id AT3G16820.1p  transcript_id AT3G16820.1  
At3g16830	chr3:005731709	0.0	W/5731709-5731788,5731874-5732053,5732133-5732246,5732335-5732493,5732577-5732754,5732844-5732976,5733113-5733228,5733353-5733485,5733568-5733677,5733857-5733926,5734030-5734100,5734185-5734280,5734349-5734441,5734528-5734655,5734783-5735017,5735122-5735280,5735377-5735472,5735574-5735723,5735820-5735930,5736053-5736229,5736352-5736480,5736584-5736679,5736775-5736957,5737036-5737211,5737309-5737531	AT3G16830.1  CDS  gene_syn TOPLESS-RELATED 2, TPR2  gene TPR2  go_component endomembrane system|GO:0012505||IEA  go_process primary shoot apical meristem specification|GO:0010072|16763149|IGI  product TPR2 (TOPLESS-RELATED 2)  note TOPLESS-RELATED 2 (TPR2); INVOLVED IN: primary shoot apical meristem specification; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594); BEST Arabidopsis thaliana protein match is: TPR3 (TOPLESS-RELATED 3) (TAIR:AT5G27030.1); Has 10164 Blast hits to 6720 proteins in 387 species: Archae - 16; Bacteria - 2370; Metazoa - 3628; Fungi - 1973; Plants - 737; Viruses - 0; Other Eukaryotes - 1440 (source: NCBI BLink).  protein_id AT3G16830.1p  transcript_id AT3G16830.1  protein_id AT3G16830.1p  transcript_id AT3G16830.1  
At3g16840	chr3:005742856	0.0	C/5742856-5743042,5742328-5742642,5741668-5741852,5741401-5741595,5741099-5741275,5740458-5740846,5740086-5740266,5739808-5739930,5739612-5739728,5739354-5739458,5738959-5739099,5738785-5738850,5738481-5738639,5738178-5738259,5738020-5738078	AT3G16840.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ATP-dependent helicase activity|GO:0008026||ISS  product ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding  note ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (RH10) (TAIR:AT5G60990.1); Has 47629 Blast hits to 37227 proteins in 1876 species: Archae - 406; Bacteria - 10857; Metazoa - 14354; Fungi - 5782; Plants - 2214; Viruses - 278; Other Eukaryotes - 13738 (source: NCBI BLink).  protein_id AT3G16840.1p  transcript_id AT3G16840.1  protein_id AT3G16840.1p  transcript_id AT3G16840.1  
At3g16850	chr3:005748692	0.0	W/5748692-5748703,5749330-5749644,5749775-5749895,5749979-5750224,5750308-5750981	AT3G16850.1  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: vacuole, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT3G06770.2); Has 1652 Blast hits to 1646 proteins in 252 species: Archae - 2; Bacteria - 503; Metazoa - 5; Fungi - 295; Plants - 770; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT3G16850.1p  transcript_id AT3G16850.1  protein_id AT3G16850.1p  transcript_id AT3G16850.1  
At3g16851	chr3:005752258	0.0	W/5752258-5752410	AT3G16851.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G16851.1p  transcript_id AT3G16851.1  protein_id AT3G16851.1p  transcript_id AT3G16851.1  
At3g16857	chr3:005756113	0.0	W/5756113-5756299,5756797-5756949,5757033-5757473,5757547-5757623,5757702-5758847,5759071-5759139	AT3G16857.2  CDS  gene_syn ARABIDOPSIS RESPONSE REGULATOR 1, ARR1  gene ARR1  function Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway.  go_component nucleus|GO:0005634|11135105|IDA  go_process response to cytokinin stimulus|GO:0009735|16227453|IGI  go_process response to cytokinin stimulus|GO:0009735|18502977|IMP  go_process response to cytokinin stimulus|GO:0009735|18723577|IGI  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_process cytokinin mediated signaling|GO:0009736|18723577|IGI  go_process regulation of chlorophyll biosynthetic process|GO:0010380|18723577|IGI  go_process regulation of anthocyanin metabolic process|GO:0031537|18723577|IGI  go_process shoot development|GO:0048367|18723577|IGI  go_process primary root development|GO:0080022|18723577|IGI  go_function two-component response regulator activity|GO:0000156|11574878|ISS  go_function two-component response regulator activity|GO:0000156|12068096|ISS  go_function two-component response regulator activity|GO:0000156||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11135105|IDA  product ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1); transcription factor/ two-component response regulator  note ARABIDOPSIS RESPONSE REGULATOR 1 (ARR1); FUNCTIONS IN: transcription factor activity, two-component response regulator activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Response regulator, plant B-type (InterPro:IPR017053), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), CheY-like (InterPro:IPR011006), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Signal transduction response regulator, receiver region (InterPro:IPR001789), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ARR2 (ARABIDOPSIS RESPONSE REGULATOR 2); transcription factor/ two-component response regulator (TAIR:AT4G16110.1); Has 59028 Blast hits to 58278 proteins in 1756 species: Archae - 495; Bacteria - 49724; Metazoa - 35; Fungi - 293; Plants - 1437; Viruses - 5; Other Eukaryotes - 7039 (source: NCBI BLink).  protein_id AT3G16857.2p  transcript_id AT3G16857.2  protein_id AT3G16857.2p  transcript_id AT3G16857.2  
At3g16857	chr3:005756113	0.0	W/5756113-5756299,5756797-5756949,5757033-5757473,5757547-5757623,5757702-5758853	AT3G16857.1  CDS  gene_syn ARABIDOPSIS RESPONSE REGULATOR 1, ARR1  gene ARR1  function Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway.  go_component nucleus|GO:0005634|11135105|IDA  go_process response to cytokinin stimulus|GO:0009735|16227453|IGI  go_process response to cytokinin stimulus|GO:0009735|18502977|IMP  go_process response to cytokinin stimulus|GO:0009735|18723577|IGI  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_process cytokinin mediated signaling|GO:0009736|18723577|IGI  go_process regulation of chlorophyll biosynthetic process|GO:0010380|18723577|IGI  go_process regulation of anthocyanin metabolic process|GO:0031537|18723577|IGI  go_process shoot development|GO:0048367|18723577|IGI  go_process primary root development|GO:0080022|18723577|IGI  go_function two-component response regulator activity|GO:0000156|11574878|ISS  go_function two-component response regulator activity|GO:0000156|12068096|ISS  go_function two-component response regulator activity|GO:0000156||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11135105|IDA  product ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1); transcription factor/ two-component response regulator  note ARABIDOPSIS RESPONSE REGULATOR 1 (ARR1); FUNCTIONS IN: transcription factor activity, two-component response regulator activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Response regulator, plant B-type (InterPro:IPR017053), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), CheY-like (InterPro:IPR011006), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Signal transduction response regulator, receiver region (InterPro:IPR001789), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: ARR2 (ARABIDOPSIS RESPONSE REGULATOR 2); transcription factor/ two-component response regulator (TAIR:AT4G16110.1); Has 59025 Blast hits to 58276 proteins in 1756 species: Archae - 495; Bacteria - 49724; Metazoa - 35; Fungi - 293; Plants - 1436; Viruses - 5; Other Eukaryotes - 7037 (source: NCBI BLink).  protein_id AT3G16857.1p  transcript_id AT3G16857.1  protein_id AT3G16857.1p  transcript_id AT3G16857.1  
At3g16860	chr3:005761564	0.0	C/5761564-5762104,5759643-5761063	AT3G16860.1  CDS  gene_syn COBL8, COBRA-LIKE PROTEIN 8 PRECURSOR  gene COBL8  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12376623|TAS  go_component anchored to membrane|GO:0031225|12805593|TAS  go_process biological_process|GO:0008150||ND  product COBL8 (COBRA-LIKE PROTEIN 8 PRECURSOR)  note COBRA-LIKE PROTEIN 8 PRECURSOR (COBL8); INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918); BEST Arabidopsis thaliana protein match is: COBL7 (COBRA-LIKE 7) (TAIR:AT4G16120.1); Has 244 Blast hits to 240 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 244; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G16860.1p  transcript_id AT3G16860.1  protein_id AT3G16860.1p  transcript_id AT3G16860.1  
At3g16870	chr3:005764388	0.0	C/5764388-5764576,5763752-5764135	AT3G16870.1  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product zinc finger (GATA type) family protein  note zinc finger (GATA type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding / transcription factor/ zinc ion binding (TAIR:AT4G16141.1); Has 960 Blast hits to 940 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 101; Fungi - 415; Plants - 389; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT3G16870.1p  transcript_id AT3G16870.1  protein_id AT3G16870.1p  transcript_id AT3G16870.1  
At3g16880	chr3:005766733	0.0	W/5766733-5767830	AT3G16880.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box protein-related  note F-box protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G16740.1); Has 832 Blast hits to 808 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 830; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G16880.1p  transcript_id AT3G16880.1  protein_id AT3G16880.1p  transcript_id AT3G16880.1  
At3g16890	chr3:005768401	0.0	C/5768401-5770380	AT3G16890.1  CDS  gene_syn PENTATRICOPEPTIDE (PPR) DOMAIN PROTEIN 40, PPR40  gene PPR40  function Encodes a mitochondrial pentatricopeptide repeat (PPR) domain protein, PPR40, which provides a signalling link between mitochondrial electron transport and regulation of stress and hormonal responses. Mutations in PPR40 result in enhanced sensitivity to salt, ABA and oxidative stress, as well as reduced electron transport through Complex III (cytochrome c reductase).  go_component mitochondrion|GO:0005739|18305213|IDA  go_process response to oxidative stress|GO:0006979|18305213|IMP  go_process response to salt stress|GO:0009651|18305213|IMP  go_process response to abscisic acid stimulus|GO:0009737|18305213|IMP  go_process mitochondrial ATP synthesis coupled electron transport|GO:0042775|18305213|IMP  product PPR40 (PENTATRICOPEPTIDE (PPR) DOMAIN PROTEIN 40)  note PENTATRICOPEPTIDE (PPR) DOMAIN PROTEIN 40 (PPR40); INVOLVED IN: response to oxidative stress, response to salt stress, mitochondrial ATP synthesis coupled electron transport, response to abscisic acid stimulus; LOCATED IN: mitochondrion; EXPRESSED IN: embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: EMB2745 (EMBRYO DEFECTIVE 2745) (TAIR:AT5G39710.1); Has 23898 Blast hits to 5899 proteins in 187 species: Archae - 4; Bacteria - 20; Metazoa - 521; Fungi - 635; Plants - 21577; Viruses - 0; Other Eukaryotes - 1141 (source: NCBI BLink).  protein_id AT3G16890.1p  transcript_id AT3G16890.1  protein_id AT3G16890.1p  transcript_id AT3G16890.1  
At3g16895	chr3:005771432	0.0	C/5771432-5771516,5771022-5771188	AT3G16895.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17155.1); Has 24 Blast hits to 24 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G16895.1p  transcript_id AT3G16895.1  protein_id AT3G16895.1p  transcript_id AT3G16895.1  
At3g16900	chr3:005772106	0.0	W/5772106-5772324,5772438-5772662,5772736-5772849	AT3G16900.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01750.2); Has 98 Blast hits to 98 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G16900.1p  transcript_id AT3G16900.1  protein_id AT3G16900.1p  transcript_id AT3G16900.1  
At3g16910	chr3:005775190	0.0	C/5775190-5775411,5774211-5774801,5773231-5774127	AT3G16910.1  CDS  gene_syn AAE7, AC NON-UTILIZING 1, ACN1, ACYL-ACTIVATING ENZYME 7  gene AAE7  function Encodes a peroxisomal protein with acetyl-CoA synthetase activity that is responsible for the activation of acetate for entry into the glyoxylate cycle.  go_component peroxisome|GO:0005777|17951448|IDA  go_component peroxisome|GO:0005777|15533942|IDA  go_process acetate metabolic process|GO:0006083|15533942|IDA  go_process glyoxylate cycle|GO:0006097|15533942|IDA  go_function acetate-CoA ligase activity|GO:0003987|15533942|IDA  go_function AMP binding|GO:0016208||ISS  product AAE7 (ACYL-ACTIVATING ENZYME 7); AMP binding / acetate-CoA ligase  note ACYL-ACTIVATING ENZYME 7 (AAE7); FUNCTIONS IN: acetate-CoA ligase activity, AMP binding; INVOLVED IN: glyoxylate cycle, acetate metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AAE1 (ACYL ACTIVATING ENZYME 1); AMP binding (TAIR:AT1G20560.1); Has 47783 Blast hits to 44674 proteins in 2172 species: Archae - 550; Bacteria - 26274; Metazoa - 2721; Fungi - 2003; Plants - 1268; Viruses - 1; Other Eukaryotes - 14966 (source: NCBI BLink).  protein_id AT3G16910.1p  transcript_id AT3G16910.1  protein_id AT3G16910.1p  transcript_id AT3G16910.1  
At3g16920	chr3:005777430	0.0	C/5777430-5777886,5777177-5777336,5776663-5777092	AT3G16920.1  CDS  go_process cell wall macromolecule catabolic process|GO:0016998||IEA  go_function chitinase activity|GO:0004568||IEA  go_function chitinase activity|GO:0004568||ISS  product chitinase  note chitinase; FUNCTIONS IN: chitinase activity; INVOLVED IN: cell wall macromolecule catabolic process; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 19 (InterPro:IPR016283), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: POM1 (POM-POM1); chitinase (TAIR:AT1G05850.1); Has 1327 Blast hits to 1327 proteins in 313 species: Archae - 0; Bacteria - 304; Metazoa - 23; Fungi - 2; Plants - 976; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT3G16920.1p  transcript_id AT3G16920.1  protein_id AT3G16920.1p  transcript_id AT3G16920.1  
At3g16930	chr3:005778876	0.0	W/5778876-5779046,5779325-5779363	AT3G16930.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G16930.1p  transcript_id AT3G16930.1  protein_id AT3G16930.1p  transcript_id AT3G16930.1  
At3g16940	chr3:005781959	0.0	W/5781959-5782022,5782571-5782696,5782792-5782907,5783000-5783088,5783214-5783259,5783438-5783633,5783720-5784045,5784128-5785378,5785560-5785853,5785935-5785985	AT3G16940.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function transcription regulator activity|GO:0030528|12218065|TAS  product calmodulin-binding protein  note calmodulin-binding protein; FUNCTIONS IN: transcription regulator activity, calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CG-1 (InterPro:IPR005559), IQ calmodulin-binding region (InterPro:IPR000048), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: calmodulin binding / transcription regulator (TAIR:AT4G16150.1); Has 4839 Blast hits to 3114 proteins in 237 species: Archae - 5; Bacteria - 137; Metazoa - 2996; Fungi - 151; Plants - 358; Viruses - 23; Other Eukaryotes - 1169 (source: NCBI BLink).  protein_id AT3G16940.1p  transcript_id AT3G16940.1  protein_id AT3G16940.1p  transcript_id AT3G16940.1  
At3g16950	chr3:005790060	0.0	C/5790060-5790383,5789824-5789970,5789549-5789683,5789326-5789431,5789116-5789240,5788744-5788869,5788565-5788645,5788127-5788189,5787949-5788023,5787790-5787868,5787587-5787687,5787368-5787481,5787177-5787290,5786936-5787007,5786761-5786811	AT3G16950.1  CDS  gene_syn LIPOAMIDE DEHYDROGENASE, LIPOAMIDE DEHYDROGENASE 1, LPD1, ptlpd1  gene LPD1  function encodes a plastid lipoamide dehydrogenase, subunit of the pyruvate dehydrogenase complex which provides acetyl-CoA for de novo fatty acid biosynthesis. The gene is highly expressed in developing seeds.  go_component nucleolus|GO:0005730|15496452|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast stroma|GO:0009570|11056213|IDA  go_process acetyl-CoA biosynthetic process from pyruvate|GO:0006086|11056213|TAS  go_function dihydrolipoyl dehydrogenase activity|GO:0004148|11056213|ISS  product LPD1 (LIPOAMIDE DEHYDROGENASE 1); dihydrolipoyl dehydrogenase  note LIPOAMIDE DEHYDROGENASE 1 (LPD1); FUNCTIONS IN: dihydrolipoyl dehydrogenase activity; INVOLVED IN: acetyl-CoA biosynthetic process from pyruvate; LOCATED IN: nucleolus, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, class I, active site (InterPro:IPR012999), Pyridine nucleotide-disulphide oxidoreductase, dimerisation (InterPro:IPR004099), Dihydrolipoamide dehydrogenase (InterPro:IPR006258), FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), Mercuric reductase (InterPro:IPR000815), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: dihydrolipoyl dehydrogenase (TAIR:AT4G16155.1); Has 19267 Blast hits to 19253 proteins in 1785 species: Archae - 357; Bacteria - 10709; Metazoa - 675; Fungi - 263; Plants - 276; Viruses - 0; Other Eukaryotes - 6987 (source: NCBI BLink).  protein_id AT3G16950.1p  transcript_id AT3G16950.1  protein_id AT3G16950.1p  transcript_id AT3G16950.1  
At3g16950	chr3:005790060	0.0	C/5790060-5790383,5789824-5789970,5789549-5789683,5789326-5789431,5789116-5789240,5788744-5788869,5788565-5788645,5788127-5788189,5787949-5788023,5787790-5787868,5787587-5787687,5787368-5787481,5787177-5787290,5786936-5787007,5786785-5786811,5786508-5786690	AT3G16950.2  CDS  gene_syn LIPOAMIDE DEHYDROGENASE, LIPOAMIDE DEHYDROGENASE 1, LPD1, ptlpd1  gene LPD1  function encodes a plastid lipoamide dehydrogenase, subunit of the pyruvate dehydrogenase complex which provides acetyl-CoA for de novo fatty acid biosynthesis. The gene is highly expressed in developing seeds.  go_component chloroplast stroma|GO:0009570|11056213|IDA  go_process acetyl-CoA biosynthetic process from pyruvate|GO:0006086|11056213|TAS  go_function dihydrolipoyl dehydrogenase activity|GO:0004148|11056213|ISS  product LPD1 (LIPOAMIDE DEHYDROGENASE 1); dihydrolipoyl dehydrogenase  note LIPOAMIDE DEHYDROGENASE 1 (LPD1); FUNCTIONS IN: dihydrolipoyl dehydrogenase activity; INVOLVED IN: acetyl-CoA biosynthetic process from pyruvate; LOCATED IN: chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, class I, active site (InterPro:IPR012999), Pyridine nucleotide-disulphide oxidoreductase, dimerisation (InterPro:IPR004099), Dihydrolipoamide dehydrogenase (InterPro:IPR006258), FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), Mercuric reductase (InterPro:IPR000815), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: dihydrolipoyl dehydrogenase (TAIR:AT4G16155.1); Has 19145 Blast hits to 19131 proteins in 1783 species: Archae - 352; Bacteria - 10610; Metazoa - 675; Fungi - 263; Plants - 276; Viruses - 0; Other Eukaryotes - 6969 (source: NCBI BLink).  protein_id AT3G16950.2p  transcript_id AT3G16950.2  protein_id AT3G16950.2p  transcript_id AT3G16950.2  
At3g16960	chr3:005792054	0.0	C/5792054-5792264,5791812-5791945	AT3G16960.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: self-incompatibility protein-related (TAIR:AT3G16970.1); Has 10 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G16960.1p  transcript_id AT3G16960.1  protein_id AT3G16960.1p  transcript_id AT3G16960.1  
At3g16970	chr3:005793668	0.0	C/5793668-5794090	AT3G16970.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product self-incompatibility protein-related  note self-incompatibility protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: self-incompatibility protein-related (TAIR:AT3G17080.1); Has 88 Blast hits to 85 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G16970.1p  transcript_id AT3G16970.1  protein_id AT3G16970.1p  transcript_id AT3G16970.1  
At3g16980	chr3:005794526	0.0	W/5794526-5794554,5794809-5794884,5795324-5795482,5795619-5795699	AT3G16980.1  CDS  gene_syn NRPB9A, NRPD9A, NRPE9A  gene NRPB9A  function One of two highly similar, non-catalytic subunits common to nuclear DNA-directed RNA polymerases II, IV and V; homologous to budding yeast RPB9. Appears to be redundant with At4g16265  go_process transcription|GO:0006350||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function transcription regulator activity|GO:0030528||IEA  go_component DNA-directed RNA polymerase II, core complex|GO:0005665|19110459|IPI  go_component DNA-directed RNA polymerase V complex|GO:0080137|19110459|IPI  go_process transcription|GO:0006350||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product NRPB9A; DNA binding / DNA-directed RNA polymerase/ nucleic acid binding / transcription regulator/ zinc ion binding  note NRPB9A; FUNCTIONS IN: DNA-directed RNA polymerase activity, transcription regulator activity, DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: transcription, regulation of transcription; LOCATED IN: DNA-directed RNA polymerase V complex, DNA-directed RNA polymerase II, core complex; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, TFIIS-type (InterPro:IPR001222), DNA-directed RNA polymerase, M/15 kDa subunit (InterPro:IPR001529); BEST Arabidopsis thaliana protein match is: NRPB9B; DNA binding / DNA-directed RNA polymerase/ nucleic acid binding / transcription regulator/ zinc ion binding (TAIR:AT4G16265.1); Has 683 Blast hits to 681 proteins in 206 species: Archae - 100; Bacteria - 0; Metazoa - 200; Fungi - 161; Plants - 59; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).  protein_id AT3G16980.1p  transcript_id AT3G16980.1  protein_id AT3G16980.1p  transcript_id AT3G16980.1  
At3g16990	chr3:005796652	0.0	C/5796652-5796783,5796348-5796565,5795937-5796252	AT3G16990.1  CDS  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product TENA/THI-4 family protein  note TENA/THI-4 family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Haem oxygenase-like, multi-helical (InterPro:IPR016084), TENA/THI-4 protein/Coenzyme PQQ biosynthesis protein C (InterPro:IPR004305); Has 201 Blast hits to 201 proteins in 61 species: Archae - 21; Bacteria - 69; Metazoa - 0; Fungi - 17; Plants - 26; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT3G16990.1p  transcript_id AT3G16990.1  protein_id AT3G16990.1p  transcript_id AT3G16990.1  
At3g17000	chr3:005797296	0.0	W/5797296-5797406,5797895-5798026,5798125-5798209,5798349-5798512,5799030-5799467	AT3G17000.1  CDS  gene_syn UBC32, ubiquitin-conjugating enzyme 32  gene UBC32  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC32 (ubiquitin-conjugating enzyme 32); ubiquitin-protein ligase  note ubiquitin-conjugating enzyme 32 (UBC32); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC34 (ubiquitin-conjugating enzyme 34); ubiquitin-protein ligase (TAIR:AT1G17280.2); Has 5810 Blast hits to 5810 proteins in 294 species: Archae - 0; Bacteria - 0; Metazoa - 2855; Fungi - 1053; Plants - 896; Viruses - 16; Other Eukaryotes - 990 (source: NCBI BLink).  protein_id AT3G17000.1p  transcript_id AT3G17000.1  protein_id AT3G17000.1p  transcript_id AT3G17000.1  
At3g17010	chr3:005800460	0.0	W/5800460-5800564,5801321-5801612,5801706-5801950,5802037-5802303	AT3G17010.1  CDS  function transcriptional factor B3 family protein, contains Pfam profile PF02362: B3 DNA binding domain. Activated by AGAMOUS ina a cal-1, ap1-1 background. Expressed in stamen primordia, the placental region of developing carpels and the ovary.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcriptional factor B3 family protein  note transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT5G18000.1); Has 220 Blast hits to 200 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 0; Plants - 182; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT3G17010.1p  transcript_id AT3G17010.1  protein_id AT3G17010.1p  transcript_id AT3G17010.1  
At3g17020	chr3:005803880	0.0	C/5803880-5804063,5803413-5803522,5802728-5802925	AT3G17020.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process response to stress|GO:0006950||ISS  go_process response to cold|GO:0009409|14535880|IEP  go_function molecular_function|GO:0003674||ND  product universal stress protein (USP) family protein  note universal stress protein (USP) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cold, response to stress; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: universal stress protein (USP) family protein / early nodulin ENOD18 family protein (TAIR:AT3G03270.2); Has 1714 Blast hits to 1682 proteins in 394 species: Archae - 203; Bacteria - 983; Metazoa - 43; Fungi - 48; Plants - 391; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT3G17020.1p  transcript_id AT3G17020.1  protein_id AT3G17020.1p  transcript_id AT3G17020.1  
At3g17030	chr3:005808193	0.0	C/5808193-5808462,5807765-5807951,5807601-5807673,5807334-5807481,5807078-5807187,5806633-5806773,5806421-5806562,5806220-5806345,5805632-5805792,5805450-5805524,5805138-5805279,5804756-5805046,5804509-5804649	AT3G17030.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027); Has 10 Blast hits to 10 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G17030.1p  transcript_id AT3G17030.1  protein_id AT3G17030.1p  transcript_id AT3G17030.1  
At3g17040	chr3:005812027	0.0	C/5812027-5812605,5811642-5811785,5811230-5811535,5810906-5810965,5810515-5810760,5810149-5810259,5809798-5809974,5809378-5809713	AT3G17040.1  CDS  gene_syn HCF107, HIGH CHLOROPHYLL FLUORESCENT 107  gene HCF107  function It is a RNA tetratricopeptide repeat-containing protein required for normal processing of transcripts from the polycistronic chloroplast psbB-psbT-psbH-petB-petD operon coding for proteins of the photosystem II and cytochrome b6/f complexes. Localizes to the chloroplast membrane. Involved in regulating plastidial gene expression and biogenesis.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_function binding|GO:0005488||IEA  go_component chloroplast envelope|GO:0009941|15918885|IDA  go_process RNA processing|GO:0006396|11549768|IMP  go_process regulation of translation|GO:0006417|11549768|IMP  go_process plastid organization|GO:0009657|11549768|IMP  product HCF107 (HIGH CHLOROPHYLL FLUORESCENT 107); binding  note HIGH CHLOROPHYLL FLUORESCENT 107 (HCF107); FUNCTIONS IN: binding; INVOLVED IN: plastid organization, regulation of translation, RNA processing; LOCATED IN: chloroplast, plasma membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: EMB2770 (EMBRYO DEFECTIVE 2770); RNA splicing factor, transesterification mechanism (TAIR:AT4G03430.1); Has 5930 Blast hits to 3414 proteins in 593 species: Archae - 295; Bacteria - 1677; Metazoa - 1648; Fungi - 859; Plants - 368; Viruses - 0; Other Eukaryotes - 1083 (source: NCBI BLink).  protein_id AT3G17040.1p  transcript_id AT3G17040.1  protein_id AT3G17040.1p  transcript_id AT3G17040.1  
At3g17050	chr3:005814748	0.0	W/5814748-5816592	AT3G17050.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, glycine-rich protein, similar to glycine-rich protein TIGR:At1g53620.1 (Arabidopsis thaliana)  
At3g17060	chr3:005818208	0.0	C/5818208-5818458,5817815-5817977,5817527-5817733,5817206-5817453,5816953-5817118	AT3G17060.1  CDS  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT5G19730.1); Has 1231 Blast hits to 1203 proteins in 174 species: Archae - 0; Bacteria - 260; Metazoa - 1; Fungi - 128; Plants - 842; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G17060.1p  transcript_id AT3G17060.1  protein_id AT3G17060.1p  transcript_id AT3G17060.1  
At3g17070	chr3:005821048	0.0	W/5821048-5821296,5822319-5822679,5822756-5823165	AT3G17070.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT5G40150.1); Has 3116 Blast hits to 3101 proteins in 241 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 305; Plants - 2754; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT3G17070.1p  transcript_id AT3G17070.1  protein_id AT3G17070.1p  transcript_id AT3G17070.1  
At3g17080	chr3:005825339	0.0	W/5825339-5825743	AT3G17080.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product self-incompatibility protein-related  note self-incompatibility protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: self-incompatibility protein-related (TAIR:AT3G16970.1); Has 104 Blast hits to 101 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G17080.1p  transcript_id AT3G17080.1  protein_id AT3G17080.1p  transcript_id AT3G17080.1  
At3g17090	chr3:005826984	0.0	W/5826984-5827311,5827861-5828228,5828710-5828946,5829106-5829327	AT3G17090.1  CDS  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C family protein / PP2C family protein  note protein phosphatase 2C family protein / PP2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: endomembrane system, protein serine/threonine phosphatase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C family protein / PP2C family protein (TAIR:AT4G38520.2); Has 3505 Blast hits to 3503 proteins in 212 species: Archae - 0; Bacteria - 7; Metazoa - 1150; Fungi - 358; Plants - 1267; Viruses - 5; Other Eukaryotes - 718 (source: NCBI BLink).  protein_id AT3G17090.1p  transcript_id AT3G17090.1  protein_id AT3G17090.1p  transcript_id AT3G17090.1  
At3g17090	chr3:005826984	0.0	W/5826984-5827311,5827861-5828228,5828710-5828950,5829111-5829124	AT3G17090.2  CDS  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C family protein / PP2C family protein  note protein phosphatase 2C family protein / PP2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: endomembrane system, protein serine/threonine phosphatase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C family protein / PP2C family protein (TAIR:AT4G38520.2); Has 3419 Blast hits to 3417 proteins in 211 species: Archae - 0; Bacteria - 5; Metazoa - 1136; Fungi - 357; Plants - 1228; Viruses - 5; Other Eukaryotes - 688 (source: NCBI BLink).  protein_id AT3G17090.2p  transcript_id AT3G17090.2  protein_id AT3G17090.2p  transcript_id AT3G17090.2  
At3g17100	chr3:005831552	0.0	W/5831552-5832244	AT3G17100.1  CDS  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT3G06590.2); Has 95 Blast hits to 95 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G17100.1p  transcript_id AT3G17100.1  protein_id AT3G17100.1p  transcript_id AT3G17100.1  
At3g17100	chr3:005831552	0.0	W/5831552-5832244	AT3G17100.2  CDS  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT3G06590.2); Has 95 Blast hits to 95 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G17100.2p  transcript_id AT3G17100.2  protein_id AT3G17100.2p  transcript_id AT3G17100.2  
At3g17110	chr3:005837842	0.0	W/5837842-5838701	AT3G17110.1  pseudogenic_transcript  pseudo  note pseudogene, glycine-rich protein  
At3g17120	chr3:005842410	0.0	W/5842410-5842860,5842954-5843110,5843195-5843246	AT3G17120.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01960.1); Has 32 Blast hits to 32 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G17120.1p  transcript_id AT3G17120.1  protein_id AT3G17120.1p  transcript_id AT3G17120.1  
At3g17120	chr3:005842410	0.0	W/5842410-5842860,5842954-5843110,5843195-5843246	AT3G17120.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01960.1); Has 32 Blast hits to 32 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G17120.2p  transcript_id AT3G17120.2  protein_id AT3G17120.2p  transcript_id AT3G17120.2  
At3g17130	chr3:005844495	0.0	C/5844495-5845046	AT3G17130.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1); enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor (TAIR:AT1G47960.1); Has 36 Blast hits to 36 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G17130.1p  transcript_id AT3G17130.1  protein_id AT3G17130.1p  transcript_id AT3G17130.1  
At3g17140	chr3:005846554	0.0	C/5846554-5846589,5846002-5846304	AT3G17140.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  product invertase inhibitor-related  note invertase inhibitor-related; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1); enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor (TAIR:AT1G47960.1); Has 33 Blast hits to 33 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G17140.1p  transcript_id AT3G17140.1  protein_id AT3G17140.1p  transcript_id AT3G17140.1  
At3g17150	chr3:005847270	0.0	W/5847270-5847474,5847772-5848121	AT3G17150.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor  note enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: enzyme inhibitor/ pectinesterase (TAIR:AT3G17152.1); Has 73 Blast hits to 73 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G17150.1p  transcript_id AT3G17150.1  protein_id AT3G17150.1p  transcript_id AT3G17150.1  
At3g17152	chr3:005848812	0.0	W/5848812-5849001,5849207-5849544	AT3G17152.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  product enzyme inhibitor/ pectinesterase  note enzyme inhibitor/ pectinesterase; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor (TAIR:AT3G17150.1); Has 103 Blast hits to 103 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G17152.1p  transcript_id AT3G17152.1  protein_id AT3G17152.1p  transcript_id AT3G17152.1  
At3g17155	chr3:005850792	0.0	W/5850792-5850876,5851121-5851278	AT3G17155.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16895.1); Has 16 Blast hits to 16 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G17155.1p  transcript_id AT3G17155.1  protein_id AT3G17155.1p  transcript_id AT3G17155.1  
At3g17160	chr3:005852207	0.0	W/5852207-5852443,5852594-5852854	AT3G17160.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47970.1); Has 52518 Blast hits to 22905 proteins in 895 species: Archae - 191; Bacteria - 9602; Metazoa - 17412; Fungi - 7793; Plants - 2829; Viruses - 960; Other Eukaryotes - 13731 (source: NCBI BLink).  protein_id AT3G17160.1p  transcript_id AT3G17160.1  protein_id AT3G17160.1p  transcript_id AT3G17160.1  
At3g17170	chr3:005854608	0.0	C/5854608-5854853,5854460-5854514,5854308-5854364,5853818-5853895,5853186-5853694	AT3G17170.1  CDS  gene_syn REGULATOR OF FATTY-ACID COMPOSITION 3, RFC3  gene RFC3  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_component chloroplast|GO:0009507||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3); structural constituent of ribosome  note REGULATOR OF FATTY-ACID COMPOSITION 3 (RFC3); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EF1B/ribosomal protein S6 (InterPro:IPR014717), Ribosomal protein S6 (InterPro:IPR000529); Has 12520 Blast hits to 8352 proteins in 1408 species: Archae - 14; Bacteria - 2671; Metazoa - 4692; Fungi - 858; Plants - 331; Viruses - 258; Other Eukaryotes - 3696 (source: NCBI BLink).  protein_id AT3G17170.1p  transcript_id AT3G17170.1  protein_id AT3G17170.1p  transcript_id AT3G17170.1  
At3g17180	chr3:005858884	0.0	C/5858884-5859157,5858708-5858815,5858481-5858576,5858223-5858315,5857917-5858005,5857090-5857514,5856883-5856978,5856125-5856230,5855861-5856010	AT3G17180.1  CDS  gene_syn scpl33, serine carboxypeptidase-like 33  gene scpl33  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl33 (serine carboxypeptidase-like 33); serine-type carboxypeptidase  note serine carboxypeptidase-like 33 (scpl33); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, flower, root, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: SCPL34; serine-type carboxypeptidase (TAIR:AT5G23210.1); Has 2555 Blast hits to 2510 proteins in 313 species: Archae - 0; Bacteria - 191; Metazoa - 568; Fungi - 566; Plants - 899; Viruses - 0; Other Eukaryotes - 331 (source: NCBI BLink).  protein_id AT3G17180.1p  transcript_id AT3G17180.1  protein_id AT3G17180.1p  transcript_id AT3G17180.1  
At3g17185	chr3:005861491	0.0	W/5861491-5862437	AT3G17185.1  ncRNA  gene_syn ATTAS3, TAS3, TASIR-ARF, TRANS-ACTING SIRNA 3  gene TAS3  function Encodes a trans-acting siRNA (tasi-RNA) that regulates the expression of auxin response factor genes (ARF2, ARF4, ETT). One of 3 genomic loci that encode the TAS3 siRNA.  go_component cellular_component|GO:0005575||ND  go_process RNA interference|GO:0016246|15851028|IDA  go_process negative regulation of gene expression, epigenetic|GO:0045814|15851028|IDA  go_process leaf development|GO:0048366|16682354|IMP  go_function molecular_function|GO:0003674||ND  product TAS3 (TRANS-ACTING SIRNA 3); other RNA  note expressed protein  transcript_id AT3G17185.1  
At3g17185	chr3:005861491	0.0	W/5861491-5862437	AT3G17185.2  ncRNA  gene_syn ATTAS3, TAS3, TASIR-ARF, TRANS-ACTING SIRNA 3  gene TAS3  function Encodes a trans-acting siRNA (tasi-RNA) that regulates the expression of auxin response factor genes (ARF2, ARF4, ETT). One of 3 genomic loci that encode the TAS3 siRNA.  go_component cellular_component|GO:0005575||ND  go_process RNA interference|GO:0016246|15851028|IDA  go_process negative regulation of gene expression, epigenetic|GO:0045814|15851028|IDA  go_process leaf development|GO:0048366|16682354|IMP  go_function molecular_function|GO:0003674||ND  product TAS3 (TRANS-ACTING SIRNA 3); other RNA  transcript_id AT3G17185.2  
At3g17190	chr3:005867392	0.0	W/5867392-5867545,5867658-5867714,5867821-5867914,5868019-5868076	AT3G17190.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT3G17190.2p  transcript_id AT3G17190.2  protein_id AT3G17190.2p  transcript_id AT3G17190.2  
At3g17190	chr3:005867392	0.0	W/5867392-5867545,5867658-5867714,5867821-5867914,5868106-5868181	AT3G17190.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G17190.1p  transcript_id AT3G17190.1  protein_id AT3G17190.1p  transcript_id AT3G17190.1  
At3g17200	chr3:005869723	0.0	W/5869723-5870852	AT3G17200.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G13655.1); similar to hypothetical protein 23.t00046 [Brassica oleracea] (GB:ABD65629.1); contains domain no description (G3D.3.50.60.10); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446); contains domain Clavaminate synthase-like (SSF51197)  
At3g17203	chr3:005870787	0.0	W/5870787-5872854	AT3G17203.1  pseudogenic_transcript  pseudo  gene_syn MCE21.2  note pseudogene, gibberellin 2 beta-hydroxylase, blastp match of 50% identity and 1.1e-66 P-value to GP|5579092|gb|AAD45424.1||AF100954 gibberellin 2-oxidase-like protein {Pisum sativum}  
At3g17205	chr3:005873528	0.0	W/5873528-5873686,5874158-5874255,5874354-5874481,5874864-5874975,5875130-5875310,5875393-5875575,5875758-5875940,5876503-5876584,5876729-5876841,5876986-5877281,5877422-5877518,5877742-5877882,5878011-5878094,5878226-5878312,5878498-5878638,5878774-5878899,5879018-5879116,5879408-5879475,5879582-5879648,5879870-5880040,5880130-5880219,5880314-5880394,5880503-5880576,5880683-5880754,5880847-5880936,5881066-5881132	AT3G17205.1  CDS  gene_syn UBIQUITIN PROTEIN LIGASE 6, UPL6  gene UPL6  go_component ubiquitin ligase complex|GO:0000151|12969426|ISS  go_component intracellular|GO:0005622||ISS  go_process protein modification process|GO:0006464||ISS  go_process protein ubiquitination|GO:0016567|12969426|ISS  go_function ubiquitin-protein ligase activity|GO:0004842|12969426|ISS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UPL6 (UBIQUITIN PROTEIN LIGASE 6); ubiquitin-protein ligase  note UBIQUITIN PROTEIN LIGASE 6 (UPL6); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein modification process, protein ubiquitination; LOCATED IN: ubiquitin ligase complex, intracellular; CONTAINS InterPro DOMAIN/s: HECT (InterPro:IPR000569), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: UPL7; ubiquitin-protein ligase (TAIR:AT3G53090.2); Has 3380 Blast hits to 3333 proteins in 174 species: Archae - 0; Bacteria - 0; Metazoa - 2123; Fungi - 505; Plants - 160; Viruses - 0; Other Eukaryotes - 592 (source: NCBI BLink).  protein_id AT3G17205.1p  transcript_id AT3G17205.1  protein_id AT3G17205.1p  transcript_id AT3G17205.1  
At3g17205	chr3:005873528	0.0	W/5873528-5873686,5874158-5874255,5874354-5874481,5874864-5874975,5875130-5875310,5875393-5875575,5875758-5875940,5876503-5876584,5876771-5876841,5876986-5877281,5877422-5877518,5877742-5877882,5878011-5878094,5878226-5878312,5878498-5878638,5878774-5878899,5879018-5879116,5879408-5879475,5879582-5879648,5879870-5880040,5880130-5880219,5880314-5880394,5880503-5880576,5880683-5880754,5880847-5880936,5881066-5881132	AT3G17205.2  CDS  gene_syn UBIQUITIN PROTEIN LIGASE 6, UPL6  gene UPL6  go_component ubiquitin ligase complex|GO:0000151|12969426|ISS  go_component intracellular|GO:0005622||ISS  go_process protein modification process|GO:0006464||ISS  go_process protein ubiquitination|GO:0016567|12969426|ISS  go_function ubiquitin-protein ligase activity|GO:0004842|12969426|ISS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UPL6 (UBIQUITIN PROTEIN LIGASE 6); ubiquitin-protein ligase  note UBIQUITIN PROTEIN LIGASE 6 (UPL6); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein modification process, protein ubiquitination; LOCATED IN: ubiquitin ligase complex, intracellular; CONTAINS InterPro DOMAIN/s: HECT (InterPro:IPR000569), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: UPL7; ubiquitin-protein ligase (TAIR:AT3G53090.2); Has 3401 Blast hits to 3346 proteins in 174 species: Archae - 0; Bacteria - 0; Metazoa - 2135; Fungi - 507; Plants - 160; Viruses - 0; Other Eukaryotes - 599 (source: NCBI BLink).  protein_id AT3G17205.2p  transcript_id AT3G17205.2  protein_id AT3G17205.2p  transcript_id AT3G17205.2  
At3g17210	chr3:005882318	0.0	W/5882318-5882457,5882707-5882896	AT3G17210.1  CDS  gene_syn A. THALIANA HEAT STABLE PROTEIN 1, ATHS1, HEAT STABLE PROTEIN 1, HS1  gene HS1  function Encodes a heat stable protein with antimicrobial and antifungal activity.  go_component plasma membrane|GO:0005886|17644812|IDA  go_process defense response to bacterium|GO:0042742|17720140|IDA  go_process defense response to fungus|GO:0050832|17720140|IDA  product HS1 (HEAT STABLE PROTEIN 1)  note HEAT STABLE PROTEIN 1 (HS1); INVOLVED IN: defense response to bacterium, defense response to fungus; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Stress responsive alpha-beta barrel (InterPro:IPR013097), Dimeric alpha-beta barrel (InterPro:IPR011008); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22580.1); Has 291 Blast hits to 289 proteins in 75 species: Archae - 0; Bacteria - 105; Metazoa - 0; Fungi - 24; Plants - 114; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT3G17210.1p  transcript_id AT3G17210.1  protein_id AT3G17210.1p  transcript_id AT3G17210.1  
At3g17220	chr3:005883328	0.0	C/5883328-5883849	AT3G17220.1  CDS  gene_syn ATPMEI2, PMEI2  gene PMEI2  function Pectin methylesterase inhibitor AtPMEI2. Inactivates AtPPME1 in vitro. Localized to Brefeldin A-induced compartments, and was found in FYVE-induced endosomal aggregates.  go_component endomembrane system|GO:0012505|17971035|IDA  go_process pollen tube growth|GO:0009860|17971035|IDA  go_function pectinesterase inhibitor activity|GO:0046910|14675772|IDA  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product PMEI2; pectinesterase inhibitor  note PMEI2; FUNCTIONS IN: pectinesterase inhibitor activity; INVOLVED IN: pollen tube growth; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, pollen tube tip, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: PMEI1 (PECTIN METHYLESTERASE INHIBITOR 1); pectinesterase inhibitor (TAIR:AT1G48020.1); Has 127 Blast hits to 125 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G17220.1p  transcript_id AT3G17220.1  protein_id AT3G17220.1p  transcript_id AT3G17220.1  
At3g17225	chr3:005884374	0.0	C/5884374-5884931	AT3G17225.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT3G17230.1); Has 57 Blast hits to 55 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G17225.1p  transcript_id AT3G17225.1  protein_id AT3G17225.1p  transcript_id AT3G17225.1  
At3g17230	chr3:005888754	0.0	C/5888754-5889236,5886381-5886953	AT3G17230.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, embryo, sepal, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT3G17225.1); Has 99 Blast hits to 69 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G17230.1p  transcript_id AT3G17230.1  protein_id AT3G17230.1p  transcript_id AT3G17230.1  
At3g17240	chr3:005891783	0.0	C/5891783-5892166	AT3G17240.2  CDS  gene_syn LIPOAMIDE DEHYDROGENASE 2, mtLPD2  gene mtLPD2  function lipoamide dehydrogenase precursor  go_component mitochondrion|GO:0005739|17137349|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|11743114|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|14764908|IDA  go_component mitochondrial matrix|GO:0005759|11598235|ISS  go_function dihydrolipoyl dehydrogenase activity|GO:0004148|11598235|IMP  go_function dihydrolipoyl dehydrogenase activity|GO:0004148|11598235|ISS  product mtLPD2 (LIPOAMIDE DEHYDROGENASE 2); ATP binding / dihydrolipoyl dehydrogenase  note LIPOAMIDE DEHYDROGENASE 2 (mtLPD2); FUNCTIONS IN: dihydrolipoyl dehydrogenase activity, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, chloroplast, mitochondrial matrix; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Dihydrolipoamide dehydrogenase (InterPro:IPR006258), Pyridine nucleotide-disulphide oxidoreductase, class I, active site (InterPro:IPR012999); BEST Arabidopsis thaliana protein match is: mtLPD1 (mitochondrial lipoamide dehydrogenase 1); ATP binding / dihydrolipoyl dehydrogenase (TAIR:AT1G48030.2); Has 11236 Blast hits to 11236 proteins in 1575 species: Archae - 177; Bacteria - 7018; Metazoa - 574; Fungi - 209; Plants - 97; Viruses - 0; Other Eukaryotes - 3161 (source: NCBI BLink).  protein_id AT3G17240.2p  transcript_id AT3G17240.2  protein_id AT3G17240.2p  transcript_id AT3G17240.2  
At3g17240	chr3:005891894	0.0	C/5891894-5892166,5890278-5891528	AT3G17240.1  CDS  gene_syn LIPOAMIDE DEHYDROGENASE 2, mtLPD2  gene mtLPD2  function lipoamide dehydrogenase precursor  go_component mitochondrion|GO:0005739|17137349|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|11743114|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|14764908|IDA  go_component mitochondrial matrix|GO:0005759|11598235|ISS  go_function dihydrolipoyl dehydrogenase activity|GO:0004148|11598235|IMP  go_function dihydrolipoyl dehydrogenase activity|GO:0004148|11598235|ISS  product mtLPD2 (LIPOAMIDE DEHYDROGENASE 2); ATP binding / dihydrolipoyl dehydrogenase  note LIPOAMIDE DEHYDROGENASE 2 (mtLPD2); FUNCTIONS IN: dihydrolipoyl dehydrogenase activity, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, chloroplast, mitochondrial matrix; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), Dihydrolipoamide dehydrogenase (InterPro:IPR006258), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, class I, active site (InterPro:IPR012999), Mercuric reductase (InterPro:IPR000815), Pyridine nucleotide-disulphide oxidoreductase, dimerisation (InterPro:IPR004099); BEST Arabidopsis thaliana protein match is: mtLPD1 (mitochondrial lipoamide dehydrogenase 1); ATP binding / dihydrolipoyl dehydrogenase (TAIR:AT1G48030.2); Has 26061 Blast hits to 26042 proteins in 1938 species: Archae - 641; Bacteria - 15956; Metazoa - 773; Fungi - 325; Plants - 352; Viruses - 0; Other Eukaryotes - 8014 (source: NCBI BLink).  protein_id AT3G17240.1p  transcript_id AT3G17240.1  protein_id AT3G17240.1p  transcript_id AT3G17240.1  
At3g17240	chr3:005891894	0.0	C/5891894-5892166,5890278-5891528	AT3G17240.3  CDS  gene_syn LIPOAMIDE DEHYDROGENASE 2, mtLPD2  gene mtLPD2  function lipoamide dehydrogenase precursor  go_component mitochondrion|GO:0005739|17137349|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|11743114|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|14764908|IDA  go_component mitochondrial matrix|GO:0005759|11598235|ISS  go_function dihydrolipoyl dehydrogenase activity|GO:0004148|11598235|IMP  go_function dihydrolipoyl dehydrogenase activity|GO:0004148|11598235|ISS  product mtLPD2 (LIPOAMIDE DEHYDROGENASE 2); ATP binding / dihydrolipoyl dehydrogenase  note LIPOAMIDE DEHYDROGENASE 2 (mtLPD2); FUNCTIONS IN: dihydrolipoyl dehydrogenase activity, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, chloroplast, mitochondrial matrix; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Dihydrolipoamide dehydrogenase (InterPro:IPR006258), Pyridine nucleotide-disulphide oxidoreductase, class I, active site (InterPro:IPR012999), Mercuric reductase (InterPro:IPR000815), Pyridine nucleotide-disulphide oxidoreductase, dimerisation (InterPro:IPR004099); BEST Arabidopsis thaliana protein match is: mtLPD1 (mitochondrial lipoamide dehydrogenase 1); ATP binding / dihydrolipoyl dehydrogenase (TAIR:AT1G48030.2); Has 26061 Blast hits to 26042 proteins in 1938 species: Archae - 641; Bacteria - 15956; Metazoa - 773; Fungi - 325; Plants - 352; Viruses - 0; Other Eukaryotes - 8014 (source: NCBI BLink).  protein_id AT3G17240.3p  transcript_id AT3G17240.3  protein_id AT3G17240.3p  transcript_id AT3G17240.3  
At3g17250	chr3:005894139	0.0	C/5894139-5894426,5892875-5893855	AT3G17250.1  CDS  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C-related / PP2C-related  note protein phosphatase 2C-related / PP2C-related; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: catalytic/ protein serine/threonine phosphatase (TAIR:AT1G48040.1); Has 4330 Blast hits to 4314 proteins in 317 species: Archae - 3; Bacteria - 197; Metazoa - 1384; Fungi - 490; Plants - 1284; Viruses - 7; Other Eukaryotes - 965 (source: NCBI BLink).  protein_id AT3G17250.1p  transcript_id AT3G17250.1  protein_id AT3G17250.1p  transcript_id AT3G17250.1  
At3g17260	chr3:005896075	0.0	C/5896075-5897835	AT3G17260.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 2.6e-27 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays)  
At3g17261	chr3:005898002	0.0	C/5898002-5898109	AT3G17261.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G17261.1p  transcript_id AT3G17261.1  protein_id AT3G17261.1p  transcript_id AT3G17261.1  
At3g17265	chr3:005900199	0.0	C/5900199-5900637,5899515-5900113	AT3G17265.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G24700.1); Has 606 Blast hits to 587 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 606; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G17265.1p  transcript_id AT3G17265.1  protein_id AT3G17265.1p  transcript_id AT3G17265.1  
At3g17270	chr3:005902479	0.0	C/5902479-5902883	AT3G17270.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G17530.1); Has 462 Blast hits to 462 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 462; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G17270.1p  transcript_id AT3G17270.1  protein_id AT3G17270.1p  transcript_id AT3G17270.1  
At3g17280	chr3:005903453	0.0	C/5903453-5904613	AT3G17280.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G17540.1); Has 965 Blast hits to 945 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 963; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G17280.1p  transcript_id AT3G17280.1  protein_id AT3G17280.1p  transcript_id AT3G17280.1  
At3g17290	chr3:005905052	0.0	C/5905052-5906716	AT3G17290.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 3.1e-27 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays)  
At3g17300	chr3:005907616	0.0	W/5907616-5907669,5907760-5907804,5908278-5908375,5908617-5908695	AT3G17300.1  CDS  product unknown protein  note EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 28 Blast hits to 28 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G17300.1p  transcript_id AT3G17300.1  protein_id AT3G17300.1p  transcript_id AT3G17300.1  
At3g17300	chr3:005907659	0.0	W/5907659-5907669,5907760-5907796,5908278-5908375,5908617-5908695	AT3G17300.2  CDS  product unknown protein  note unknown protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 19 Blast hits to 19 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G17300.2p  transcript_id AT3G17300.2  protein_id AT3G17300.2p  transcript_id AT3G17300.2  
At3g17310	chr3:005912836	0.0	C/5912836-5912838,5912621-5912752,5912387-5912483,5912199-5912296,5912020-5912116,5911368-5911519,5911121-5911220,5910836-5910927,5909294-5910655	AT3G17310.1  CDS  go_process DNA methylation|GO:0006306||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_function methyltransferase activity|GO:0008168||ISS  product methyltransferase family protein  note methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, DNA binding; INVOLVED IN: DNA methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C-5 cytosine-specific DNA methylase (InterPro:IPR001525); BEST Arabidopsis thaliana protein match is: DRM2 (DOMAINS REARRANGED METHYLTRANSFERASE 2); N-methyltransferase (TAIR:AT5G14620.1); Has 86 Blast hits to 65 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G17310.1p  transcript_id AT3G17310.1  protein_id AT3G17310.1p  transcript_id AT3G17310.1  
At3g17310	chr3:005912836	0.0	C/5912836-5912838,5912621-5912752,5912387-5912483,5912199-5912296,5912020-5912116,5911368-5911519,5911121-5911220,5910836-5910927,5909294-5910655	AT3G17310.2  CDS  go_process DNA methylation|GO:0006306||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_function methyltransferase activity|GO:0008168||ISS  product methyltransferase family protein  note methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, DNA binding; INVOLVED IN: DNA methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C-5 cytosine-specific DNA methylase (InterPro:IPR001525); BEST Arabidopsis thaliana protein match is: DRM2 (DOMAINS REARRANGED METHYLTRANSFERASE 2); N-methyltransferase (TAIR:AT5G14620.1); Has 86 Blast hits to 65 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G17310.2p  transcript_id AT3G17310.2  protein_id AT3G17310.2p  transcript_id AT3G17310.2  
At3g17320	chr3:005915427	0.0	C/5915427-5916656	AT3G17320.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G16740.1); Has 721 Blast hits to 689 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 719; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G17320.1p  transcript_id AT3G17320.1  protein_id AT3G17320.1p  transcript_id AT3G17320.1  
At3g17330	chr3:005918874	0.0	C/5918874-5919068,5918251-5918730,5917948-5918160,5917253-5917846	AT3G17330.2  CDS  gene_syn ECT6, evolutionarily conserved C-terminal region 6  gene ECT6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ECT6 (evolutionarily conserved C-terminal region 6)  note evolutionarily conserved C-terminal region 6 (ECT6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: YT521-B-like protein (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: ECT7 (evolutionarily conserved C-terminal region 7) (TAIR:AT1G48110.2); Has 689 Blast hits to 688 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 344; Fungi - 82; Plants - 189; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT3G17330.2p  transcript_id AT3G17330.2  protein_id AT3G17330.2p  transcript_id AT3G17330.2  
At3g17330	chr3:005919389	0.0	C/5919389-5919458,5918874-5919304,5918251-5918730,5917948-5918160,5917253-5917846	AT3G17330.1  CDS  gene_syn ECT6, evolutionarily conserved C-terminal region 6  gene ECT6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ECT6 (evolutionarily conserved C-terminal region 6)  note evolutionarily conserved C-terminal region 6 (ECT6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: YT521-B-like protein (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: ECT7 (evolutionarily conserved C-terminal region 7) (TAIR:AT1G48110.2); Has 715 Blast hits to 696 proteins in 119 species: Archae - 0; Bacteria - 2; Metazoa - 345; Fungi - 82; Plants - 210; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT3G17330.1p  transcript_id AT3G17330.1  protein_id AT3G17330.1p  transcript_id AT3G17330.1  
At3g17340	chr3:005926687	0.0	C/5926687-5926846,5926324-5926496,5926031-5926198,5925604-5925714,5925411-5925488,5925052-5925248,5924927-5924987,5924750-5924824,5924588-5924665,5924428-5924490,5924252-5924335,5923995-5924170,5923525-5923564,5923295-5923438,5923015-5923134,5922709-5922924,5922320-5922481,5921548-5922220,5921175-5921380,5920856-5920991,5920613-5920764	AT3G17340.1  CDS  go_component nucleus|GO:0005634||IEA  go_component nuclear pore|GO:0005643||IEA  go_component cytoplasm|GO:0005737||IEA  go_process protein import into nucleus, docking|GO:0000059||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function binding|GO:0005488||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component nucleus|GO:0005634||ISS  go_component nuclear pore|GO:0005643||ISS  go_component cytoplasm|GO:0005737||ISS  go_process protein import into nucleus, docking|GO:0000059||ISS  go_function protein transporter activity|GO:0008565||ISS  product binding / protein transporter  note binding / protein transporter; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding / protein transporter (TAIR:AT3G59020.2); Has 11124 Blast hits to 4804 proteins in 282 species: Archae - 20; Bacteria - 339; Metazoa - 5690; Fungi - 1073; Plants - 347; Viruses - 393; Other Eukaryotes - 3262 (source: NCBI BLink).  protein_id AT3G17340.1p  transcript_id AT3G17340.1  protein_id AT3G17340.1p  transcript_id AT3G17340.1  
At3g17350	chr3:005934111	0.0	W/5934111-5934618,5934708-5935036	AT3G17350.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G50290.1); Has 113 Blast hits to 113 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G17350.1p  transcript_id AT3G17350.1  protein_id AT3G17350.1p  transcript_id AT3G17350.1  
At3g17360	chr3:005936108	0.0	W/5936108-5936617,5936704-5936859,5936927-5937010,5937094-5937213,5937290-5937403,5937506-5937598,5937689-5937849,5937921-5937995,5938357-5938444,5938525-5938583,5938662-5938725,5938807-5938872,5938971-5939108,5939203-5939307,5939435-5939670,5939756-5939825,5939898-5939951,5940042-5940100,5940467-5940533,5940615-5940644,5940805-5941999,5942130-5942206,5942305-5943615,5943709-5943816,5943908-5944071,5944164-5944236,5944351-5944425,5944737-5944976,5945121-5945219,5945307-5945381,5945471-5945529,5945621-5945732,5945832-5945927,5946038-5946205	AT3G17360.1  CDS  gene_syn PHRAGMOPLAST ORIENTING KINESIN 1, POK1  gene POK1  function PHRAGMOPLAST ORIENTING KINESIN 1 is one of the two Arabidopsis homologs isolated in yeast two-hybrid screen for interaction partners of maize gene TANGLED1 (TAN1). Based on sequence homology in their motor domains, POK1 and POK2 belong to the kinesin-12 class which also includes the well-characterized group of phragmoplast-associated kinesins AtPAKRPs. Both kinesins are composed of an N-terminal motor domain throughout the entire C terminus and putative cargo binding tail domains. The expression domains for POK1 constructs were more limited than those for POK2; both are expressed in tissues enriched for dividing cells. The phenotype of pok1/pok2 double mutants strongly resembles that of maize tan1 mutants, characterized by misoriented mitotic cytoskeletal arrays and misplaced cell walls.  go_component microtubule associated complex|GO:0005875||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_process cytokinesis|GO:0000910|19011093|IGI  go_function microtubule motor activity|GO:0003777||ISS  product POK1 (PHRAGMOPLAST ORIENTING KINESIN 1); ATP binding / microtubule motor  note PHRAGMOPLAST ORIENTING KINESIN 1 (POK1); FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: cytokinesis; LOCATED IN: microtubule associated complex; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin-related (InterPro:IPR010544), Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: POK2 (PHRAGMOPLAST ORIENTING KINESIN 2); ATP binding / microtubule motor (TAIR:AT3G19050.1); Has 75766 Blast hits to 39877 proteins in 1600 species: Archae - 997; Bacteria - 7495; Metazoa - 39272; Fungi - 5739; Plants - 3506; Viruses - 219; Other Eukaryotes - 18538 (source: NCBI BLink).  protein_id AT3G17360.1p  transcript_id AT3G17360.1  protein_id AT3G17360.1p  transcript_id AT3G17360.1  
At3g17365	chr3:005948589	0.0	C/5948589-5948766,5948383-5948496,5948158-5948226,5948044-5948063,5947906-5947958,5947763-5947793,5947604-5947682,5947357-5947496,5947144-5947179	AT3G17365.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  go_function catalytic activity|GO:0003824||ISS  product catalytic/ methyltransferase  note catalytic/ methyltransferase; FUNCTIONS IN: methyltransferase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: catalytic/ methyltransferase (TAIR:AT3G60910.1); Has 889 Blast hits to 888 proteins in 188 species: Archae - 17; Bacteria - 122; Metazoa - 263; Fungi - 34; Plants - 84; Viruses - 0; Other Eukaryotes - 369 (source: NCBI BLink).  protein_id AT3G17365.1p  transcript_id AT3G17365.1  protein_id AT3G17365.1p  transcript_id AT3G17365.1  
At3g17370	chr3:005949006	0.0	C/5949006-5949644	AT3G17370.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G63230.1); Has 15208 Blast hits to 4394 proteins in 142 species: Archae - 3; Bacteria - 18; Metazoa - 169; Fungi - 116; Plants - 14541; Viruses - 0; Other Eukaryotes - 361 (source: NCBI BLink).  protein_id AT3G17370.1p  transcript_id AT3G17370.1  protein_id AT3G17370.1p  transcript_id AT3G17370.1  
At3g17380	chr3:005950240	0.0	W/5950240-5950264,5950554-5950683,5951123-5951292,5951366-5951648,5951719-5951885,5951970-5952124	AT3G17380.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT3G22080.1); Has 1018 Blast hits to 792 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 66; Plants - 700; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT3G17380.1p  transcript_id AT3G17380.1  protein_id AT3G17380.1p  transcript_id AT3G17380.1  
At3g17390	chr3:005952484	0.0	C/5952484-5953665	AT3G17390.1  CDS  gene_syn MAT4, METHIONINE ADENOSYLTRANSFERASE 4, METHIONINE OVER-ACCUMULATOR 3, MTO3, S-ADENOSYLMETHIONINE SYNTHETASE, S-ADENOSYLMETHIONINE SYNTHETASE 3, SAMS3  gene MTO3  function S-adenosylmethionine synthetase  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process methionine metabolic process|GO:0006555|11844113|IMP  go_process S-adenosylmethionine biosynthetic process|GO:0006556||ISS  go_process response to cold|GO:0009409|16574749|IEP  go_process lignin biosynthetic process|GO:0009809|11844113|IMP  go_function methionine adenosyltransferase activity|GO:0004478|11844113|ISS  go_function methionine adenosyltransferase activity|GO:0004478||ISS  product MTO3 (METHIONINE OVER-ACCUMULATOR 3); methionine adenosyltransferase  note METHIONINE OVER-ACCUMULATOR 3 (MTO3); FUNCTIONS IN: methionine adenosyltransferase activity; INVOLVED IN: lignin biosynthetic process, methionine metabolic process, response to cold, S-adenosylmethionine biosynthetic process; LOCATED IN: nucleolus, cell wall, plasma membrane, membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine synthetase (InterPro:IPR002133); BEST Arabidopsis thaliana protein match is: SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1); methionine adenosyltransferase (TAIR:AT1G02500.2); Has 8022 Blast hits to 8021 proteins in 1637 species: Archae - 6; Bacteria - 2990; Metazoa - 309; Fungi - 109; Plants - 502; Viruses - 0; Other Eukaryotes - 4106 (source: NCBI BLink).  protein_id AT3G17390.1p  transcript_id AT3G17390.1  protein_id AT3G17390.1p  transcript_id AT3G17390.1  
At3g17400	chr3:005954887	0.0	W/5954887-5955444	AT3G17400.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G17620.1); Has 486 Blast hits to 486 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 484; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G17400.1p  transcript_id AT3G17400.1  protein_id AT3G17400.1p  transcript_id AT3G17400.1  
At3g17410	chr3:005956601	0.0	W/5956601-5956685,5956760-5957010,5957154-5957280,5957379-5957652,5957885-5958017,5958404-5958490,5958745-5958882	AT3G17410.1  CDS  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product serine/threonine protein kinase, putative  note serine/threonine protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase, putative (TAIR:AT1G48210.2); Has 80836 Blast hits to 79972 proteins in 3240 species: Archae - 50; Bacteria - 7423; Metazoa - 35632; Fungi - 5924; Plants - 18246; Viruses - 310; Other Eukaryotes - 13251 (source: NCBI BLink).  protein_id AT3G17410.1p  transcript_id AT3G17410.1  protein_id AT3G17410.1p  transcript_id AT3G17410.1  
At3g17420	chr3:005960751	0.0	C/5960751-5961313,5960442-5960669,5960184-5960354,5959957-5960086,5959650-5959865,5959462-5959557	AT3G17420.1  CDS  gene_syn GLYOXYSOMAL PROTEIN KINASE 1, GPK1  gene GPK1  function serine/threonine protein kinase-like protein  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product GPK1; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note GPK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G18500.2); Has 85823 Blast hits to 84769 proteins in 3065 species: Archae - 50; Bacteria - 8084; Metazoa - 37667; Fungi - 6442; Plants - 18412; Viruses - 420; Other Eukaryotes - 14748 (source: NCBI BLink).  protein_id AT3G17420.1p  transcript_id AT3G17420.1  protein_id AT3G17420.1p  transcript_id AT3G17420.1  
At3g17430	chr3:005966597	0.0	W/5966597-5966689,5967066-5967173,5967308-5967339,5967437-5967487,5967628-5967689,5967780-5968041,5968190-5968455,5968557-5968651,5968804-5968962	AT3G17430.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function organic anion transmembrane transporter activity|GO:0008514||ISS  product phosphate translocator-related  note phosphate translocator-related; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: phosphate translocator-related (TAIR:AT1G48230.1); Has 1446 Blast hits to 1445 proteins in 173 species: Archae - 0; Bacteria - 5; Metazoa - 374; Fungi - 259; Plants - 650; Viruses - 0; Other Eukaryotes - 158 (source: NCBI BLink).  protein_id AT3G17430.1p  transcript_id AT3G17430.1  protein_id AT3G17430.1p  transcript_id AT3G17430.1  
At3g17440	chr3:005972214	0.0	C/5972214-5972290,5971906-5971998,5971581-5971674,5971228-5971265,5970968-5971068,5970558-5970637,5970419-5970475,5970247-5970343,5970153-5970166	AT3G17440.2  CDS  gene_syn ATNPSN13, NOVEL PLANT SNARE 13, NPSN13  gene NPSN13  function member of NPSN Gene Family  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process intracellular protein transport|GO:0006886||IEA  go_function molecular_function|GO:0003674||ND  product NPSN13 (NOVEL PLANT SNARE 13)  note NOVEL PLANT SNARE 13 (NPSN13); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vesicle transport v-SNARE (InterPro:IPR007705), Target SNARE coiled-coil region (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: ATNPSN12; protein transporter (TAIR:AT1G48240.1); Has 267 Blast hits to 255 proteins in 64 species: Archae - 2; Bacteria - 14; Metazoa - 84; Fungi - 4; Plants - 72; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).  protein_id AT3G17440.2p  transcript_id AT3G17440.2  protein_id AT3G17440.2p  transcript_id AT3G17440.2  
At3g17440	chr3:005972214	0.0	C/5972214-5972290,5971906-5971998,5971581-5971674,5971228-5971265,5970968-5971068,5970558-5970637,5970419-5970475,5970251-5970343,5970092-5970166,5969909-5970010	AT3G17440.1  CDS  gene_syn ATNPSN13, NOVEL PLANT SNARE 13, NPSN13  gene NPSN13  function member of NPSN Gene Family  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process intracellular protein transport|GO:0006886||IEA  go_function molecular_function|GO:0003674||ND  product NPSN13 (NOVEL PLANT SNARE 13)  note NOVEL PLANT SNARE 13 (NPSN13); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vesicle transport v-SNARE (InterPro:IPR007705), Target SNARE coiled-coil region (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: ATNPSN12; protein transporter (TAIR:AT1G48240.1); Has 356 Blast hits to 342 proteins in 92 species: Archae - 2; Bacteria - 14; Metazoa - 100; Fungi - 10; Plants - 87; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).  protein_id AT3G17440.1p  transcript_id AT3G17440.1  protein_id AT3G17440.1p  transcript_id AT3G17440.1  
At3g17450	chr3:005973681	0.0	C/5973681-5975684,5973508-5973591,5973034-5973423,5972793-5972948	AT3G17450.1  CDS  go_function DNA binding|GO:0003677||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product hAT dimerisation domain-containing protein  note hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021), Protein of unknown function DUF1544 (InterPro:IPR011523); BEST Arabidopsis thaliana protein match is: DNA binding / protein dimerization (TAIR:AT4G15020.2); Has 789 Blast hits to 596 proteins in 56 species: Archae - 0; Bacteria - 8; Metazoa - 69; Fungi - 13; Plants - 607; Viruses - 15; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT3G17450.1p  transcript_id AT3G17450.1  protein_id AT3G17450.1p  transcript_id AT3G17450.1  
At3g17460	chr3:005976949	0.0	C/5976949-5977545	AT3G17460.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product PHD finger family protein  note PHD finger family protein; FUNCTIONS IN: protein binding, DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G09520.1); Has 27 Blast hits to 27 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G17460.1p  transcript_id AT3G17460.1  protein_id AT3G17460.1p  transcript_id AT3G17460.1  
At3g17465	chr3:005979201	0.0	C/5979201-5979572,5978813-5979022,5978544-5978648,5978348-5978461,5978059-5978232	AT3G17465.1  CDS  gene_syn RIBOSOMAL PROTEIN L3 PLASTID, RPL3P  gene RPL3P  function encodes a putative L3 ribosomal protein targeted to the plastid.  go_component mitochondrion|GO:0005739|14671022|IDA  go_component ribosome|GO:0005840||ISS  go_component ribosome|GO:0005840||NAS  go_process translation|GO:0006412||ISS  go_process translation|GO:0006412||NAS  go_function structural constituent of ribosome|GO:0003735||ISS  go_function structural constituent of ribosome|GO:0003735||NAS  product RPL3P (RIBOSOMAL PROTEIN L3 PLASTID); structural constituent of ribosome  note RIBOSOMAL PROTEIN L3 PLASTID (RPL3P); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: mitochondrion, ribosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L3 (InterPro:IPR000597), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: ribosomal protein L3 family protein (TAIR:AT2G43030.1); Has 5958 Blast hits to 5958 proteins in 1573 species: Archae - 191; Bacteria - 2910; Metazoa - 117; Fungi - 86; Plants - 52; Viruses - 0; Other Eukaryotes - 2602 (source: NCBI BLink).  protein_id AT3G17465.1p  transcript_id AT3G17465.1  protein_id AT3G17465.1p  transcript_id AT3G17465.1  
At3g17470	chr3:005979868	0.0	W/5979868-5980248,5980433-5981365,5981437-5981727,5981822-5981968	AT3G17470.1  CDS  gene_syn ATCRSH  go_process guanosine tetraphosphate metabolic process|GO:0015969||IEA  go_component chloroplast|GO:0009507|18535838|IDA  go_function calcium ion binding|GO:0005509||ISS  go_function GTP diphosphokinase activity|GO:0008728|18535838|IGI  product RelA/SpoT domain-containing protein / calcium-binding EF-hand family protein  note RelA/SpoT domain-containing protein / calcium-binding EF-hand family protein; FUNCTIONS IN: GTP diphosphokinase activity, calcium ion binding; INVOLVED IN: guanosine tetraphosphate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248), RelA/SpoT (InterPro:IPR007685); BEST Arabidopsis thaliana protein match is: RSH3 (RELA/SPOT HOMOLOG 3); GTP diphosphokinase (TAIR:AT1G54130.1); Has 9156 Blast hits to 9111 proteins in 1936 species: Archae - 2; Bacteria - 3932; Metazoa - 1073; Fungi - 862; Plants - 449; Viruses - 0; Other Eukaryotes - 2838 (source: NCBI BLink).  protein_id AT3G17470.1p  transcript_id AT3G17470.1  protein_id AT3G17470.1p  transcript_id AT3G17470.1  
At3g17480	chr3:005983199	0.0	W/5983199-5984320	AT3G17480.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product F-box family protein  note F-box family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G62270.1); Has 1147 Blast hits to 1118 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1145; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G17480.1p  transcript_id AT3G17480.1  protein_id AT3G17480.1p  transcript_id AT3G17480.1  
At3g17490	chr3:005984827	0.0	W/5984827-5985993	AT3G17490.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G47300.1); Has 950 Blast hits to 923 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 948; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G17490.1p  transcript_id AT3G17490.1  protein_id AT3G17490.1p  transcript_id AT3G17490.1  
At3g17500	chr3:005986685	0.0	W/5986685-5987804,5988302-5988498	AT3G17500.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G22350.1); Has 1053 Blast hits to 950 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1051; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G17500.1p  transcript_id AT3G17500.1  protein_id AT3G17500.1p  transcript_id AT3G17500.1  
At3g17510	chr3:005991129	0.0	C/5991129-5991215,5990918-5991025,5990761-5990841,5990482-5990661,5990184-5990399,5989988-5990092,5989781-5989897,5989627-5989689,5989460-5989534,5989309-5989371	AT3G17510.2  CDS  gene_syn CBL-INTERACTING PROTEIN KINASE 1, CIPK1, SNF1-RELATED PROTEIN KINASE 3.16, SnRK3.16  gene CIPK1  function Encodes a CBL-interacting protein kinase. Specifically interacts with ECT1 and ECT2.  go_component plasma membrane|GO:0005886|17092313|IDA  go_process response to osmotic stress|GO:0006970|17092313|IMP  go_process response to salt stress|GO:0009651|17092313|IMP  go_process response to abscisic acid stimulus|GO:0009737|17092313|IMP  go_function protein binding|GO:0005515|16113215|IPI  go_function kinase activity|GO:0016301||ISS  product CIPK1 (CBL-INTERACTING PROTEIN KINASE 1); kinase/ protein binding  note CBL-INTERACTING PROTEIN KINASE 1 (CIPK1); FUNCTIONS IN: protein binding, kinase activity; INVOLVED IN: response to salt stress, response to abscisic acid stimulus, response to osmotic stress; LOCATED IN: plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719), NAF/FISL domain (InterPro:IPR018451), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CIPK17 (CBL-INTERACTING PROTEIN KINASE 17); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT1G48260.1); Has 84077 Blast hits to 83010 proteins in 1933 species: Archae - 46; Bacteria - 7778; Metazoa - 35716; Fungi - 7829; Plants - 16231; Viruses - 465; Other Eukaryotes - 16012 (source: NCBI BLink).  protein_id AT3G17510.2p  transcript_id AT3G17510.2  protein_id AT3G17510.2p  transcript_id AT3G17510.2  
At3g17510	chr3:005992436	0.0	C/5992436-5992627,5992277-5992339,5991129-5991200,5990918-5991025,5990761-5990841,5990482-5990661,5990184-5990399,5989988-5990092,5989781-5989897,5989627-5989689,5989460-5989534,5989309-5989371	AT3G17510.1  CDS  gene_syn CBL-INTERACTING PROTEIN KINASE 1, CIPK1, SNF1-RELATED PROTEIN KINASE 3.16, SnRK3.16  gene CIPK1  function Encodes a CBL-interacting protein kinase. Specifically interacts with ECT1 and ECT2.  go_component plasma membrane|GO:0005886|17092313|IDA  go_process response to osmotic stress|GO:0006970|17092313|IMP  go_process response to salt stress|GO:0009651|17092313|IMP  go_process response to abscisic acid stimulus|GO:0009737|17092313|IMP  go_function protein binding|GO:0005515|16113215|IPI  go_function kinase activity|GO:0016301||ISS  product CIPK1 (CBL-INTERACTING PROTEIN KINASE 1); kinase/ protein binding  note CBL-INTERACTING PROTEIN KINASE 1 (CIPK1); FUNCTIONS IN: protein binding, kinase activity; INVOLVED IN: response to salt stress, response to abscisic acid stimulus, response to osmotic stress; LOCATED IN: plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CIPK17 (CBL-INTERACTING PROTEIN KINASE 17); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT1G48260.1); Has 93839 Blast hits to 92405 proteins in 2651 species: Archae - 68; Bacteria - 8414; Metazoa - 40750; Fungi - 8439; Plants - 17925; Viruses - 477; Other Eukaryotes - 17766 (source: NCBI BLink).  protein_id AT3G17510.1p  transcript_id AT3G17510.1  protein_id AT3G17510.1p  transcript_id AT3G17510.1  
At3g17520	chr3:005999462	0.0	C/5999462-6000358	AT3G17520.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||ISS  product late embryogenesis abundant domain-containing protein / LEA domain-containing protein  note late embryogenesis abundant domain-containing protein / LEA domain-containing protein; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: endomembrane system; EXPRESSED IN: cultured cell, seed, leaf; EXPRESSED DURING: dry seed stage, LP.04 four leaves visible; Has 34185 Blast hits to 18660 proteins in 1584 species: Archae - 165; Bacteria - 7752; Metazoa - 10377; Fungi - 3168; Plants - 2120; Viruses - 260; Other Eukaryotes - 10343 (source: NCBI BLink).  protein_id AT3G17520.1p  transcript_id AT3G17520.1  protein_id AT3G17520.1p  transcript_id AT3G17520.1  
At3g17530	chr3:006000860	0.0	W/6000860-6002026	AT3G17530.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G17540.1); Has 979 Blast hits to 955 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 977; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G17530.1p  transcript_id AT3G17530.1  protein_id AT3G17530.1p  transcript_id AT3G17530.1  
At3g17540	chr3:006002783	0.0	W/6002783-6003973	AT3G17540.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G17530.1); Has 983 Blast hits to 961 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 981; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G17540.1p  transcript_id AT3G17540.1  protein_id AT3G17540.1p  transcript_id AT3G17540.1  
At3g17550	chr3:006005114	0.0	C/6005114-6006004	AT3G17550.1  CDS  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_function phosphoprotein phosphatase activity|GO:0004721||IEA  product NLI interacting factor (NIF) family protein  note NLI interacting factor (NIF) family protein; FUNCTIONS IN: phosphoprotein phosphatase activity; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: FCP1-like phosphatase, phosphatase domain (InterPro:IPR011947), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: phosphoprotein phosphatase (TAIR:AT3G19595.1); Has 1183 Blast hits to 1183 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 459; Fungi - 216; Plants - 154; Viruses - 0; Other Eukaryotes - 354 (source: NCBI BLink).  protein_id AT3G17550.1p  transcript_id AT3G17550.1  protein_id AT3G17550.1p  transcript_id AT3G17550.1  
At3g17560	chr3:006006762	0.0	W/6006762-6008003	AT3G17560.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G62270.1); Has 709 Blast hits to 681 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 707; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G17560.1p  transcript_id AT3G17560.1  protein_id AT3G17560.1p  transcript_id AT3G17560.1  
At3g17570	chr3:006009413	0.0	W/6009413-6010558	AT3G17570.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G17530.1); Has 958 Blast hits to 937 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 956; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G17570.1p  transcript_id AT3G17570.1  protein_id AT3G17570.1p  transcript_id AT3G17570.1  
At3g17580	chr3:006015276	0.0	W/6015276-6015518	AT3G17580.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48330.1); Has 25 Blast hits to 25 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G17580.1p  transcript_id AT3G17580.1  protein_id AT3G17580.1p  transcript_id AT3G17580.1  
At3g17590	chr3:006019542	0.0	C/6019542-6019591,6019352-6019440,6019148-6019242,6018736-6018807,6018576-6018623,6018410-6018493,6018268-6018306,6018060-6018142,6017895-6017957,6017313-6017412	AT3G17590.1  CDS  gene_syn BSH, BUSHY, BUSHY GROWTH, CHE1  gene BSH  function Encodes the Arabidopsis homologue of yeast SNF5 and represents a conserved subunit of plant SWI/SNF complexes.  go_component nucleus|GO:0005634|10325430|IDA  go_process chromatin modification|GO:0016568|10325430|ISS  go_function chromatin binding|GO:0003682|10325430|ISS  go_function protein binding|GO:0005515|12140326|IPI  product BSH (BUSHY GROWTH); chromatin binding / protein binding  note BUSHY GROWTH (BSH); FUNCTIONS IN: protein binding, chromatin binding; INVOLVED IN: chromatin modification; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SNF5/SMARCB1/INI1 (InterPro:IPR006939); Has 451 Blast hits to 319 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 232; Fungi - 184; Plants - 19; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT3G17590.1p  transcript_id AT3G17590.1  protein_id AT3G17590.1p  transcript_id AT3G17590.1  
At3g17600	chr3:006020916	0.0	C/6020916-6021040,6020607-6020818,6020424-6020508,6020281-6020335	AT3G17600.1  CDS  gene_syn IAA31, INDOLE-3-ACETIC ACID INDUCIBLE 31  gene IAA31  function Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA31 shares several residues with the conserved domain II region, believed to act as a degron in many of the rapidly degraded Aux/IAA family members. An IAA31 fusion protein is quite long-lived, but can be degraded more rapidly in the presence of auxin. Unlike many other family members, IAA31 transcript levels do not rise in response to auxin. Nevertheless, overexpression of IAA31 leads to defects in auxin-related processes such as gravitropism, root development, shoot development, and cotyledon vascular development.  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process gravitropism|GO:0009630|18298415|IMP  go_process response to auxin stimulus|GO:0009733|12036262|TAS  go_process shoot system development|GO:0022621|18298415|IMP  go_process root development|GO:0048364|18298415|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product IAA31 (INDOLE-3-ACETIC ACID INDUCIBLE 31); transcription factor  note INDOLE-3-ACETIC ACID INDUCIBLE 31 (IAA31); FUNCTIONS IN: transcription factor activity; INVOLVED IN: shoot system development, response to auxin stimulus, gravitropism, root development; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: stem, rosette leaf, fruit, flower, root; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA30 (INDOLE-3-ACETIC ACID INDUCIBLE 30); transcription factor (TAIR:AT3G62100.1); Has 1152 Blast hits to 1152 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1151; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G17600.1p  transcript_id AT3G17600.1  protein_id AT3G17600.1p  transcript_id AT3G17600.1  
At3g17609	chr3:006023971	0.0	W/6023971-6024034,6024108-6024294,6024387-6024585	AT3G17609.2  CDS  gene_syn HY5-HOMOLOG, HYH  gene HYH  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to UV-B|GO:0010224|18266923|IEP  go_process anthocyanin metabolic process|GO:0046283|17217468|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  product HYH (HY5-HOMOLOG); DNA binding / transcription factor  note HY5-HOMOLOG (HYH); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: HY5 (ELONGATED HYPOCOTYL 5); DNA binding / double-stranded DNA binding / transcription factor (TAIR:AT5G11260.1); Has 1325 Blast hits to 1325 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 769; Fungi - 175; Plants - 289; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).  protein_id AT3G17609.2p  transcript_id AT3G17609.2  protein_id AT3G17609.2p  transcript_id AT3G17609.2  
At3g17609	chr3:006023971	0.0	W/6023971-6024034,6024150-6024294,6024387-6024585	AT3G17609.1  CDS  gene_syn HY5-HOMOLOG, HYH  gene HYH  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to UV-B|GO:0010224|18266923|IEP  go_process anthocyanin metabolic process|GO:0046283|17217468|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  product HYH (HY5-HOMOLOG); DNA binding / transcription factor  note HY5-HOMOLOG (HYH); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: HY5 (ELONGATED HYPOCOTYL 5); DNA binding / double-stranded DNA binding / transcription factor (TAIR:AT5G11260.1); Has 1305 Blast hits to 1305 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 757; Fungi - 173; Plants - 287; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT3G17609.1p  transcript_id AT3G17609.1  protein_id AT3G17609.1p  transcript_id AT3G17609.1  
At3g17609	chr3:006023971	0.0	W/6023971-6024034,6024153-6024294,6024387-6024585	AT3G17609.4  CDS  gene_syn HY5-HOMOLOG, HYH  gene HYH  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to UV-B|GO:0010224|18266923|IEP  go_process anthocyanin metabolic process|GO:0046283|17217468|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  product HYH (HY5-HOMOLOG); DNA binding / transcription factor  note HY5-HOMOLOG (HYH); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: HY5 (ELONGATED HYPOCOTYL 5); DNA binding / double-stranded DNA binding / transcription factor (TAIR:AT5G11260.1); Has 1327 Blast hits to 1327 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 751; Fungi - 182; Plants - 312; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT3G17609.4p  transcript_id AT3G17609.4  protein_id AT3G17609.4p  transcript_id AT3G17609.4  
At3g17609	chr3:006024131	0.0	W/6024131-6024294,6024387-6024585	AT3G17609.3  CDS  gene_syn HY5-HOMOLOG, HYH  gene HYH  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to UV-B|GO:0010224|18266923|IEP  go_process anthocyanin metabolic process|GO:0046283|17217468|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  product HYH (HY5-HOMOLOG); DNA binding / transcription factor  note HY5-HOMOLOG (HYH); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: HY5 (ELONGATED HYPOCOTYL 5); DNA binding / double-stranded DNA binding / transcription factor (TAIR:AT5G11260.1); Has 1253 Blast hits to 1253 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 741; Fungi - 155; Plants - 275; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT3G17609.3p  transcript_id AT3G17609.3  protein_id AT3G17609.3p  transcript_id AT3G17609.3  
At3g17611	chr3:006024946	0.0	W/6024946-6025161,6025385-6026173	AT3G17611.1  CDS  gene_syn ARABIDOPSIS RHOMBOID-LIKE PROTEIN 14, ATRBL14  gene ATRBL14  go_component intracellular|GO:0005622||IEA  go_component integral to membrane|GO:0016021||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product ATRBL14 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 14); zinc ion binding  note ARABIDOPSIS RHOMBOID-LIKE PROTEIN 14 (ATRBL14); FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: ATRBL15 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 15) (TAIR:AT3G58460.1); Has 479 Blast hits to 479 proteins in 160 species: Archae - 8; Bacteria - 189; Metazoa - 73; Fungi - 28; Plants - 84; Viruses - 3; Other Eukaryotes - 94 (source: NCBI BLink).  protein_id AT3G17611.1p  transcript_id AT3G17611.1  protein_id AT3G17611.1p  transcript_id AT3G17611.1  
At3g17611	chr3:006025454	0.0	W/6025454-6026173	AT3G17611.2  CDS  gene_syn ARABIDOPSIS RHOMBOID-LIKE PROTEIN 14, ATRBL14  gene ATRBL14  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product ATRBL14 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 14); zinc ion binding  note ARABIDOPSIS RHOMBOID-LIKE PROTEIN 14 (ATRBL14); FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); Has 153 Blast hits to 153 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 68; Fungi - 3; Plants - 66; Viruses - 3; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT3G17611.2p  transcript_id AT3G17611.2  protein_id AT3G17611.2p  transcript_id AT3G17611.2  
At3g17611	chr3:006025652	0.0	W/6025652-6026173	AT3G17611.3  CDS  gene_syn ARABIDOPSIS RHOMBOID-LIKE PROTEIN 14, ATRBL14  gene ATRBL14  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product ATRBL14 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 14); zinc ion binding  note ARABIDOPSIS RHOMBOID-LIKE PROTEIN 14 (ATRBL14); FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); Has 111 Blast hits to 111 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 67; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT3G17611.3p  transcript_id AT3G17611.3  protein_id AT3G17611.3p  transcript_id AT3G17611.3  
At3g17620	chr3:006026498	0.0	C/6026498-6027694	AT3G17620.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G16740.1); Has 933 Blast hits to 904 proteins in 58 species: Archae - 0; Bacteria - 30; Metazoa - 0; Fungi - 0; Plants - 901; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G17620.1p  transcript_id AT3G17620.1  protein_id AT3G17620.1p  transcript_id AT3G17620.1  
At3g17626	chr3:006028179	0.0	W/6028179-6028220,6028375-6028494	AT3G17626.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ribosomal protein L18 family protein (TAIR:AT1G48350.1); Has 336 Blast hits to 336 proteins in 121 species: Archae - 0; Bacteria - 241; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT3G17626.1p  transcript_id AT3G17626.1  protein_id AT3G17626.1p  transcript_id AT3G17626.1  
At3g17630	chr3:006029201	0.0	W/6029201-6029398,6029489-6030490,6030571-6031773	AT3G17630.1  CDS  gene_syn ATCHX19, CATION/H+ EXCHANGER 19, CHX19  gene ATCHX19  function member of Putative Na+/H+ antiporter family  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|IC  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product ATCHX19 (CATION/H+ EXCHANGER 19); monovalent cation:proton antiporter/ sodium:hydrogen antiporter  note CATION/H+ EXCHANGER 19 (ATCHX19); FUNCTIONS IN: monovalent cation:proton antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: ATCHX18; monovalent cation:proton antiporter/ sodium:hydrogen antiporter (TAIR:AT5G41610.1); Has 6156 Blast hits to 6130 proteins in 1203 species: Archae - 237; Bacteria - 4513; Metazoa - 55; Fungi - 151; Plants - 297; Viruses - 0; Other Eukaryotes - 903 (source: NCBI BLink).  protein_id AT3G17630.1p  transcript_id AT3G17630.1  protein_id AT3G17630.1p  transcript_id AT3G17630.1  
At3g17640	chr3:006032393	0.0	W/6032393-6033583	AT3G17640.1  CDS  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT1G03440.1); Has 30630 Blast hits to 12414 proteins in 655 species: Archae - 12; Bacteria - 1377; Metazoa - 6220; Fungi - 226; Plants - 20870; Viruses - 0; Other Eukaryotes - 1925 (source: NCBI BLink).  protein_id AT3G17640.1p  transcript_id AT3G17640.1  protein_id AT3G17640.1p  transcript_id AT3G17640.1  
At3g17650	chr3:006034307	0.0	W/6034307-6034742,6034968-6035125,6035224-6035321,6035406-6035540,6035668-6035857,6035960-6037087	AT3G17650.1  CDS  gene_syn PDE321, YELLOW STRIPE LIKE 5, YSL5, pigment defective 321  gene YSL5  function Arabidopsis thaliana metal-nicotianamine transporter YSL5  go_component plasma membrane|GO:0005886|17317660|IDA  go_process oligopeptide transport|GO:0006857||ISS  go_function oligopeptide transporter activity|GO:0015198||ISS  product YSL5 (YELLOW STRIPE LIKE 5); oligopeptide transporter  note YELLOW STRIPE LIKE 5 (YSL5); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: YSL8 (YELLOW STRIPE LIKE 8); oligopeptide transporter (TAIR:AT1G48370.1); Has 1023 Blast hits to 977 proteins in 284 species: Archae - 12; Bacteria - 462; Metazoa - 0; Fungi - 141; Plants - 264; Viruses - 1; Other Eukaryotes - 143 (source: NCBI BLink).  protein_id AT3G17650.1p  transcript_id AT3G17650.1  protein_id AT3G17650.1p  transcript_id AT3G17650.1  
At3g17660	chr3:006037717	0.0	W/6037717-6037767,6037859-6037917,6038008-6038098,6038181-6038235,6038324-6038414,6038510-6038711,6038861-6039008,6039091-6039092	AT3G17660.1  CDS  gene_syn AGD15, ARF-GAP domain 15  gene AGD15  function A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes; AGD15 belongs to the class 4, together with AGD14.  go_process regulation of ARF GTPase activity|GO:0032312||IEA  go_function ARF GTPase activator activity|GO:0008060||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_function DNA binding|GO:0003677||ISS  product AGD15 (ARF-GAP domain 15); ARF GTPase activator/ DNA binding / zinc ion binding  note ARF-GAP domain 15 (AGD15); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: AGD5 (ARF-GAP domain 5); ARF GTPase activator/ DNA binding / zinc ion binding (TAIR:AT5G54310.1); Has 2632 Blast hits to 2630 proteins in 165 species: Archae - 0; Bacteria - 0; Metazoa - 1538; Fungi - 406; Plants - 293; Viruses - 0; Other Eukaryotes - 395 (source: NCBI BLink).  protein_id AT3G17660.1p  transcript_id AT3G17660.1  protein_id AT3G17660.1p  transcript_id AT3G17660.1  
At3g17668	chr3:006039640	0.0	W/6039640-6039774,6039852-6039948,6040068-6040122,6040204-6040324	AT3G17668.1  CDS  gene_syn ENA, ENHANCER OF ATNSI ACTIVITY  gene ENA  go_component chloroplast|GO:0009507||IEA  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  product ENA (ENHANCER OF ATNSI ACTIVITY); heat shock protein binding / unfolded protein binding  note ENHANCER OF ATNSI ACTIVITY (ENA); FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, cysteine-rich region (InterPro:IPR001305); Has 103 Blast hits to 95 proteins in 30 species: Archae - 2; Bacteria - 13; Metazoa - 34; Fungi - 2; Plants - 26; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT3G17668.1p  transcript_id AT3G17668.1  protein_id AT3G17668.1p  transcript_id AT3G17668.1  
At3g17670	chr3:006040857	0.0	W/6040857-6041261,6041340-6041389,6041481-6041568,6041660-6041776,6041962-6042012	AT3G17670.1  CDS  gene_syn ENA, ENHANCER OF ATNSI ACTIVITY  go_component chloroplast|GO:0009507||IEA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026), Thioredoxin-like fold (InterPro:IPR012336); Has 1467 Blast hits to 1204 proteins in 262 species: Archae - 38; Bacteria - 722; Metazoa - 248; Fungi - 62; Plants - 97; Viruses - 0; Other Eukaryotes - 300 (source: NCBI BLink).  protein_id AT3G17670.1p  transcript_id AT3G17670.1  protein_id AT3G17670.1p  transcript_id AT3G17670.1  
At3g17675	chr3:006042667	0.0	C/6042667-6042781,6042244-6042449	AT3G17675.1  CDS  function Encodes a Plantacyanin/Basic blue family protein  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  product copper ion binding / electron carrier  note copper ion binding / electron carrier; FUNCTIONS IN: electron carrier activity, copper ion binding; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: plastocyanin-like domain-containing protein / mavicyanin, putative (TAIR:AT5G26330.1); Has 785 Blast hits to 776 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 785; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G17675.1p  transcript_id AT3G17675.1  protein_id AT3G17675.1p  transcript_id AT3G17675.1  
At3g17680	chr3:006044219	0.0	C/6044219-6044267,6043138-6044030	AT3G17680.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: KIP1-like (InterPro:IPR011684); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48405.1); Has 75 Blast hits to 73 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 2; Plants - 52; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT3G17680.1p  transcript_id AT3G17680.1  protein_id AT3G17680.1p  transcript_id AT3G17680.1  
At3g17690	chr3:006045382	0.0	W/6045382-6045774,6045865-6046056,6046128-6046226,6046304-6046690,6046780-6047025,6047115-6047260,6047334-6047411,6047491-6047620,6047731-6047971,6048062-6048339	AT3G17690.1  CDS  gene_syn ATCNGC19, CNGC19, CYCLIC NUCLEOTIDE GATED CHANNEL 19  gene CNGC19  function member of Cyclic nucleotide gated channel family  go_component membrane|GO:0016020||IEA  go_process ion transport|GO:0006811||IEA  go_function ion channel activity|GO:0005216||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function cyclic nucleotide binding|GO:0030551||ISS  product ATCNGC19; calmodulin binding / cyclic nucleotide binding / ion channel  note ATCNGC19; FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport; LOCATED IN: membrane; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding, conserved site (InterPro:IPR018488), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: CNBT1 (CYCLIC NUCLEOTIDE-BINDING TRANSPORTER 1); calmodulin binding / cyclic nucleotide binding / ion channel (TAIR:AT3G17700.1); Has 2180 Blast hits to 2136 proteins in 184 species: Archae - 0; Bacteria - 10; Metazoa - 1239; Fungi - 0; Plants - 576; Viruses - 0; Other Eukaryotes - 355 (source: NCBI BLink).  protein_id AT3G17690.1p  transcript_id AT3G17690.1  protein_id AT3G17690.1p  transcript_id AT3G17690.1  
At3g17700	chr3:006049074	0.0	W/6049074-6049568,6049662-6049853,6049949-6050047,6050134-6050271,6050352-6050600,6050705-6050947,6051076-6051221,6051322-6051399,6051527-6051656,6051810-6052056,6052172-6052449	AT3G17700.1  CDS  gene_syn ATCNGC20, CNBT1, CNGC20, CYCLIC NUCLEOTIDE-BINDING TRANSPORTER 1  gene CNBT1  function cyclic nucleotide-binding transporter 1, member of a family of cyclic nucleotide gated channels.  go_component chloroplast|GO:0009507||IEA  go_component membrane|GO:0016020||IEA  go_process response to nematode|GO:0009624|16478044|IEP  go_function ion channel activity|GO:0005216||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function cyclic nucleotide binding|GO:0030551||ISS  product CNBT1 (CYCLIC NUCLEOTIDE-BINDING TRANSPORTER 1); calmodulin binding / cyclic nucleotide binding / ion channel  note CYCLIC NUCLEOTIDE-BINDING TRANSPORTER 1 (CNBT1); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: response to nematode; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding, conserved site (InterPro:IPR018488), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: ATCNGC19; calmodulin binding / cyclic nucleotide binding / ion channel (TAIR:AT3G17690.1); Has 2137 Blast hits to 2094 proteins in 186 species: Archae - 0; Bacteria - 12; Metazoa - 1241; Fungi - 0; Plants - 593; Viruses - 0; Other Eukaryotes - 291 (source: NCBI BLink).  protein_id AT3G17700.1p  transcript_id AT3G17700.1  protein_id AT3G17700.1p  transcript_id AT3G17700.1  
At3g17710	chr3:006055597	0.0	W/6055597-6056703	AT3G17710.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G18340.1); Has 934 Blast hits to 907 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 932; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G17710.1p  transcript_id AT3G17710.1  protein_id AT3G17710.1p  transcript_id AT3G17710.1  
At3g17712	chr3:006056983	0.0	W/6056983-6057455,6057568-6058336,6058512-6059127,6059387-6059913	AT3G17712.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1740 (InterPro:IPR013633); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17740.1).  protein_id AT3G17712.1p  transcript_id AT3G17712.1  protein_id AT3G17712.1p  transcript_id AT3G17712.1  
At3g17715	chr3:006060714	0.0	W/6060714-6061941	AT3G17715.1  pseudogenic_transcript  pseudo  gene_syn MKP6.31  note pseudogene, similar to S-adenosylmethionine decarboxylase proenzyme 3 (EC 4.1.1.50) (AdoMetDC 3) (SamDC 3) (Contains: S-adenosylmethionine decarboxylase 3 alpha chain; S-adenosylmethionine decarboxylase 3 beta chain). (Leaf mustar-TRUNCATED-, similar to unknown protein GB:AAC69117 from (Arabidopsis thaliana); blastp match of 49% identity and 2.4e-52 P-value to SP|Q9SDM8|DCA3_BRAJU S-adenosylmethionine decarboxylase proenzyme 3 (EC 4.1.1.50) (AdoMetDC 3) (SamDC 3) (Contains: S-adenosylmethionine decarboxylase 3 alpha chain; S-adenosylmethionine decarboxylase 3 beta chain). (Leaf mustar-TRUNCATED-  
At3g17720	chr3:006062446	0.0	W/6062446-6062544,6062889-6063080,6063190-6063483	AT3G17720.1  CDS  go_process glutamate metabolic process|GO:0006536||IEA  go_process carboxylic acid metabolic process|GO:0019752||IEA  go_function catalytic activity|GO:0003824||IEA  go_function glutamate decarboxylase activity|GO:0004351||IEA  go_function carboxy-lyase activity|GO:0016831||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_process amino acid metabolic process|GO:0006520||ISS  go_function carboxy-lyase activity|GO:0016831||ISS  product pyridoxal-dependent decarboxylase family protein  note pyridoxal-dependent decarboxylase family protein; FUNCTIONS IN: pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity, glutamate decarboxylase activity; INVOLVED IN: amino acid metabolic process, carboxylic acid metabolic process, glutamate metabolic process; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Glutamate decarboxylase (InterPro:IPR010107), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: GAD5 (glutamate decarboxylase 5); calmodulin binding (TAIR:AT3G17760.2); Has 1093 Blast hits to 1093 proteins in 378 species: Archae - 82; Bacteria - 614; Metazoa - 49; Fungi - 169; Plants - 123; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT3G17720.1p  transcript_id AT3G17720.1  protein_id AT3G17720.1p  transcript_id AT3G17720.1  
At3g17730	chr3:006064379	0.0	W/6064379-6064535,6064672-6064949,6065508-6065813	AT3G17730.1  CDS  gene_syn Arabidopsis NAC domain containing protein 57, anac057  gene anac057  go_process regulation of transcription|GO:0045449||IEA  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac057 (Arabidopsis NAC domain containing protein 57); transcription factor  note Arabidopsis NAC domain containing protein 57 (anac057); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac028 (Arabidopsis NAC domain containing protein 28); transcription factor (TAIR:AT1G65910.1); Has 1628 Blast hits to 1625 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1628; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G17730.1p  transcript_id AT3G17730.1  protein_id AT3G17730.1p  transcript_id AT3G17730.1  
At3g17740	chr3:006072342	0.0	C/6072342-6072814,6071461-6072229,6070670-6071285,6069882-6070411,6069698-6069808,6068981-6069338,6068636-6068861,6068225-6068446,6068003-6068147	AT3G17740.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1740 (InterPro:IPR013633); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17712.1); Has 282 Blast hits to 237 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 124; Fungi - 103; Plants - 25; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT3G17740.1p  transcript_id AT3G17740.1  protein_id AT3G17740.1p  transcript_id AT3G17740.1  
At3g17750	chr3:006074228	0.0	W/6074228-6075383,6075536-6076796,6076943-6077222,6077390-6077497,6077582-6077860,6077961-6078104,6078240-6078428	AT3G17750.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G73460.1); Has 66475 Blast hits to 65314 proteins in 1897 species: Archae - 46; Bacteria - 5501; Metazoa - 28981; Fungi - 7789; Plants - 9204; Viruses - 362; Other Eukaryotes - 14592 (source: NCBI BLink).  protein_id AT3G17750.1p  transcript_id AT3G17750.1  protein_id AT3G17750.1p  transcript_id AT3G17750.1  
At3g17760	chr3:006080756	0.0	C/6080756-6080838,6080452-6080656,6080160-6080360,6079581-6080049,6079447-6079499,6078893-6079366	AT3G17760.1  CDS  gene_syn GAD5, glutamate decarboxylase 5  gene GAD5  go_process glutamate metabolic process|GO:0006536||IEA  go_process glutamate decarboxylation to succinate|GO:0006540||IEA  go_process carboxylic acid metabolic process|GO:0019752||IEA  go_component cellular_component|GO:0005575||ND  go_function calmodulin binding|GO:0005516|11782485|ISS  product GAD5 (glutamate decarboxylase 5); calmodulin binding  note glutamate decarboxylase 5 (GAD5); FUNCTIONS IN: calmodulin binding; INVOLVED IN: carboxylic acid metabolic process, glutamate metabolic process, glutamate decarboxylation to succinate; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Glutamate decarboxylase (InterPro:IPR010107), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: GAD4 (glutamate decarboxylase 4); calmodulin binding (TAIR:AT2G02010.1); Has 1679 Blast hits to 1676 proteins in 507 species: Archae - 124; Bacteria - 867; Metazoa - 134; Fungi - 219; Plants - 170; Viruses - 5; Other Eukaryotes - 160 (source: NCBI BLink).  protein_id AT3G17760.1p  transcript_id AT3G17760.1  protein_id AT3G17760.1p  transcript_id AT3G17760.1  
At3g17760	chr3:006080756	0.0	C/6080756-6080838,6080452-6080656,6080160-6080360,6079581-6080049,6079447-6079499,6078893-6079366	AT3G17760.2  CDS  gene_syn GAD5, glutamate decarboxylase 5  gene GAD5  go_process glutamate metabolic process|GO:0006536||IEA  go_process carboxylic acid metabolic process|GO:0019752||IEA  go_component cellular_component|GO:0005575||ND  go_function calmodulin binding|GO:0005516|11782485|ISS  product GAD5 (glutamate decarboxylase 5); calmodulin binding  note glutamate decarboxylase 5 (GAD5); FUNCTIONS IN: calmodulin binding; INVOLVED IN: carboxylic acid metabolic process, glutamate metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Glutamate decarboxylase (InterPro:IPR010107), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: GAD4 (glutamate decarboxylase 4); calmodulin binding (TAIR:AT2G02010.1).  protein_id AT3G17760.2p  transcript_id AT3G17760.2  protein_id AT3G17760.2p  transcript_id AT3G17760.2  
At3g17770	chr3:006085918	0.0	C/6085918-6085957,6085341-6085478,6085148-6085260,6085029-6085076,6084841-6084912,6084682-6084771,6084266-6084439,6084087-6084170,6083949-6084004,6083654-6083784,6083483-6083575,6083331-6083395,6083089-6083232,6082945-6082988,6082749-6082832,6082576-6082649,6082379-6082491,6082195-6082290,6081973-6082101	AT3G17770.1  CDS  go_process glycerol metabolic process|GO:0006071||IEA  go_function glycerone kinase activity|GO:0004371||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process glycerol metabolic process|GO:0006071||ISS  go_function glycerone kinase activity|GO:0004371||ISS  product dihydroxyacetone kinase family protein  note dihydroxyacetone kinase family protein; FUNCTIONS IN: glycerone kinase activity, ATP binding; INVOLVED IN: glycerol metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dak phosphatase (InterPro:IPR004007), Dihydroxyacetone kinase (InterPro:IPR012734), Dak kinase (InterPro:IPR004006); BEST Arabidopsis thaliana protein match is: dihydroxyacetone kinase family protein (TAIR:AT1G48430.1); Has 2619 Blast hits to 2616 proteins in 532 species: Archae - 8; Bacteria - 1790; Metazoa - 84; Fungi - 145; Plants - 38; Viruses - 0; Other Eukaryotes - 554 (source: NCBI BLink).  protein_id AT3G17770.1p  transcript_id AT3G17770.1  protein_id AT3G17770.1p  transcript_id AT3G17770.1  
At3g17780	chr3:006087016	0.0	W/6087016-6087187,6087335-6087417,6087916-6087971,6088050-6088128	AT3G17780.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48440.1); Has 58 Blast hits to 58 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G17780.1p  transcript_id AT3G17780.1  protein_id AT3G17780.1p  transcript_id AT3G17780.1  
At3g17790	chr3:006089779	0.0	W/6089779-6089982,6090090-6090246,6090333-6090988	AT3G17790.1  CDS  gene_syn ATACP5, ATPAP17, PAP17, PURPLE ACID PHOSPHATASE 17  gene PAP17  go_component cell surface|GO:0009986|10504579|ISS  go_process cellular phosphate ion homeostasis|GO:0030643|10504579|IEP  go_process response to hydrogen peroxide|GO:0042542|10504579|IEP  go_function acid phosphatase activity|GO:0003993|16244908|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  go_function phosphatase activity|GO:0016791|10504579|IDA  product PAP17; acid phosphatase/ phosphatase/ protein serine/threonine phosphatase  note PAP17; FUNCTIONS IN: phosphatase activity, protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: response to hydrogen peroxide, cellular phosphate ion homeostasis; LOCATED IN: cell surface; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: PAP3 (PURPLE ACID PHOSPHATASE 3); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT1G14700.1); Has 911 Blast hits to 906 proteins in 224 species: Archae - 2; Bacteria - 200; Metazoa - 324; Fungi - 6; Plants - 95; Viruses - 0; Other Eukaryotes - 284 (source: NCBI BLink).  protein_id AT3G17790.1p  transcript_id AT3G17790.1  protein_id AT3G17790.1p  transcript_id AT3G17790.1  
At3g17800	chr3:006092712	0.0	C/6092712-6092873,6092254-6092564,6091248-6092058	AT3G17800.2  CDS  function mRNA level of the MEB5.2 gene (At3g17800) remains unchanged after cutting the inflorescence stem  go_component chloroplast|GO:0009507||IEA  go_process response to UV-B|GO:0010224|12665302|IEP  go_process response to UV-B|GO:0010224|15474373|IGI  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to UV-B; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF760 (InterPro:IPR008479); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48450.1); Has 98 Blast hits to 98 proteins in 25 species: Archae - 0; Bacteria - 15; Metazoa - 1; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G17800.2p  transcript_id AT3G17800.2  protein_id AT3G17800.2p  transcript_id AT3G17800.2  
At3g17800	chr3:006092730	0.0	C/6092730-6092873,6092254-6092564,6091248-6092058	AT3G17800.1  CDS  function mRNA level of the MEB5.2 gene (At3g17800) remains unchanged after cutting the inflorescence stem  go_component chloroplast|GO:0009507||IEA  go_process response to UV-B|GO:0010224|12665302|IEP  go_process response to UV-B|GO:0010224|15474373|IGI  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to UV-B; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF760 (InterPro:IPR008479); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48450.1); Has 98 Blast hits to 98 proteins in 24 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G17800.1p  transcript_id AT3G17800.1  protein_id AT3G17800.1p  transcript_id AT3G17800.1  
At3g17810	chr3:006094279	0.0	W/6094279-6094560,6094713-6094976,6095092-6095262,6095456-6095568,6095660-6095843,6095930-6096039,6096133-6096289	AT3G17810.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process  de novo  pyrimidine base biosynthetic process|GO:0006207||IEA  go_process UMP biosynthetic process|GO:0006222||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function dihydroorotate dehydrogenase activity|GO:0004152||IEA  go_function dihydroorotate oxidase activity|GO:0004158||IEA  go_process  de novo  pyrimidine base biosynthetic process|GO:0006207||ISS  go_function oxidoreductase activity, acting on the CH-CH group of donors|GO:0016627||ISS  product dihydroorotate dehydrogenase family protein / dihydroorotate oxidase family protein  note dihydroorotate dehydrogenase family protein / dihydroorotate oxidase family protein; FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors, catalytic activity, dihydroorotate oxidase activity, dihydroorotate dehydrogenase activity; INVOLVED IN:  de novo  pyrimidine base biosynthetic process, UMP biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Dihydroorotate dehydrogenase, classes 1 and 2 (InterPro:IPR012135), Dihydroorotate dehydrogenase, class 1, core (InterPro:IPR005720); Has 3539 Blast hits to 3539 proteins in 1009 species: Archae - 112; Bacteria - 2115; Metazoa - 241; Fungi - 79; Plants - 25; Viruses - 0; Other Eukaryotes - 967 (source: NCBI BLink).  protein_id AT3G17810.1p  transcript_id AT3G17810.1  protein_id AT3G17810.1p  transcript_id AT3G17810.1  
At3g17820	chr3:006097503	0.0	W/6097503-6097576,6097837-6097876,6097952-6098055,6098159-6098207,6098287-6098393,6098470-6098557,6098643-6098846,6098926-6098979,6099064-6099408	AT3G17820.1  CDS  gene_syn ARABIDOPSIS THALIANA GLUTAMINE SYNTHASE CLONE KB6, ATGSKB6, GLN1.3, GLN1;3, GLUTAMINE SYNTHETASE 1.3, GLUTAMINE SYNTHETASE 1;3  gene GLN1.3  function encodes a cytosolic glutamine synthetase, the enzyme has low affinity with substrate ammonium  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function copper ion binding|GO:0005507|16526091|IDA  go_component cytosol|GO:0005829|10482686|TAS  go_process glutamine biosynthetic process|GO:0006542||TAS  go_process response to sucrose stimulus|GO:0009744|10482686|IEP  go_process response to glucose stimulus|GO:0009749|10482686|IEP  go_process response to fructose stimulus|GO:0009750|10482686|IEP  go_process nitrate assimilation|GO:0042128|16338958|TAS  go_function glutamate-ammonia ligase activity|GO:0004356|14757761|IDA  go_function glutamate-ammonia ligase activity|GO:0004356|1684022|IDA  go_function glutamate-ammonia ligase activity|GO:0004356|1684022|IEP  go_function glutamate-ammonia ligase activity|GO:0004356||ISS  product ATGSKB6; copper ion binding / glutamate-ammonia ligase  note ATGSKB6; FUNCTIONS IN: glutamate-ammonia ligase activity, copper ion binding; INVOLVED IN: in 6 processes; LOCATED IN: cytosol, cytosolic ribosome, chloroplast, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine synthetase, catalytic region (InterPro:IPR008146), Glutamine synthetase, beta-Grasp (InterPro:IPR008147), Glutamine synthetase/guanido kinase, catalytic region (InterPro:IPR014746); BEST Arabidopsis thaliana protein match is: ATGSR1; copper ion binding / glutamate-ammonia ligase (TAIR:AT5G37600.1); Has 7137 Blast hits to 7134 proteins in 1996 species: Archae - 99; Bacteria - 3006; Metazoa - 376; Fungi - 165; Plants - 1088; Viruses - 3; Other Eukaryotes - 2400 (source: NCBI BLink).  protein_id AT3G17820.1p  transcript_id AT3G17820.1  protein_id AT3G17820.1p  transcript_id AT3G17820.1  
At3g17830	chr3:006101868	0.0	W/6101868-6102134,6102239-6102307,6102405-6102500,6102589-6102713,6102980-6103175,6103280-6103455,6103540-6103669,6103750-6103910,6103995-6104065,6104144-6104225,6104323-6104503	AT3G17830.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process protein folding|GO:0006457||IEA  go_process response to heat|GO:0009408||IEA  go_function ATP binding|GO:0005524||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock family protein  note DNAJ heat shock family protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding, ATP binding; INVOLVED IN: protein folding, response to heat; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), Heat shock protein DnaJ, cysteine-rich region (InterPro:IPR001305), Chaperone DnaJ (InterPro:IPR012724), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock protein, putative (TAIR:AT1G80030.3); Has 20538 Blast hits to 19920 proteins in 2105 species: Archae - 124; Bacteria - 6183; Metazoa - 3744; Fungi - 1633; Plants - 1407; Viruses - 16; Other Eukaryotes - 7431 (source: NCBI BLink).  protein_id AT3G17830.1p  transcript_id AT3G17830.1  protein_id AT3G17830.1p  transcript_id AT3G17830.1  
At3g17840	chr3:006106092	0.0	W/6106092-6107442,6107838-6108430	AT3G17840.1  CDS  gene_syn RECEPTOR-LIKE KINASE 902, RLK902  gene RLK902  function Encodes a receptor-like kinase found at the cell surface of various tissues. Its function remains unknown.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component plasma membrane|GO:0005886|15388970|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product RLK902; ATP binding / kinase/ protein serine/threonine kinase  note RLK902; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: RKL1; ATP binding / kinase/ protein serine/threonine kinase (TAIR:AT1G48480.1); Has 98380 Blast hits to 78408 proteins in 2539 species: Archae - 48; Bacteria - 6629; Metazoa - 36189; Fungi - 5124; Plants - 37043; Viruses - 301; Other Eukaryotes - 13046 (source: NCBI BLink).  protein_id AT3G17840.1p  transcript_id AT3G17840.1  protein_id AT3G17840.1p  transcript_id AT3G17840.1  
At3g17845	chr3:006109203	0.0	C/6109203-6109325	AT3G17845.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G17845.1p  transcript_id AT3G17845.1  protein_id AT3G17845.1p  transcript_id AT3G17845.1  
At3g17850	chr3:006115531	0.0	C/6115531-6116245,6115112-6115176,6114824-6115006,6113393-6114745,6113126-6113298,6112738-6112981,6112494-6112586,6112280-6112420,6112106-6112198,6111785-6111989,6111394-6111479,6111099-6111187,6110942-6110993,6110807-6110863,6110548-6110724,6110351-6110428,6109854-6109940	AT3G17850.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: kinase (TAIR:AT1G48490.3); Has 93654 Blast hits to 91012 proteins in 3322 species: Archae - 87; Bacteria - 8430; Metazoa - 40487; Fungi - 8683; Plants - 16447; Viruses - 470; Other Eukaryotes - 19050 (source: NCBI BLink).  protein_id AT3G17850.1p  transcript_id AT3G17850.1  protein_id AT3G17850.1p  transcript_id AT3G17850.1  
At3g17860	chr3:006119968	0.0	W/6119968-6120052,6121129-6121328,6121589-6121803,6121879-6121969,6122051-6122354,6122452-6122512,6122589-6122691	AT3G17860.1  CDS  gene_syn JAI3, JASMONATE-INSENSITIVE 3, JASMONATE-ZIM-DOMAIN PROTEIN 3, JAZ3, TIFY6B  gene JAZ3  function JAZs are direct targets of the SCFCOI1 E3 ubiquitin-ligase and JA treatment induces their proteasome-mediated degradation. Furthermore, JAI3 negatively regulates the key transcriptional activator of JA responses, AtMYC2. The C-terminal portion of JAZ3, including the Jas domain, appears to be important for JAZ3-COI1 binding in the presence of coronatine.  go_process jasmonic acid mediated signaling pathway|GO:0009867|17637675|IMP  go_function molecular_function|GO:0003674||ND  product JAZ3 (JASMONATE-ZIM-DOMAIN PROTEIN 3)  note JASMONATE-ZIM-DOMAIN PROTEIN 3 (JAZ3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: jasmonic acid mediated signaling pathway; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: JAZ4 (JASMONATE-ZIM-DOMAIN PROTEIN 4) (TAIR:AT1G48500.1); Has 485 Blast hits to 215 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 194; Viruses - 0; Other Eukaryotes - 289 (source: NCBI BLink).  protein_id AT3G17860.1p  transcript_id AT3G17860.1  protein_id AT3G17860.1p  transcript_id AT3G17860.1  
At3g17860	chr3:006121083	0.0	W/6121083-6121328,6121589-6121803,6121879-6121969,6122051-6122354,6122452-6122512,6122589-6122691	AT3G17860.2  CDS  gene_syn JAI3, JASMONATE-INSENSITIVE 3, JASMONATE-ZIM-DOMAIN PROTEIN 3, JAZ3, TIFY6B  gene JAZ3  function JAZs are direct targets of the SCFCOI1 E3 ubiquitin-ligase and JA treatment induces their proteasome-mediated degradation. Furthermore, JAI3 negatively regulates the key transcriptional activator of JA responses, AtMYC2. The C-terminal portion of JAZ3, including the Jas domain, appears to be important for JAZ3-COI1 binding in the presence of coronatine.  go_process jasmonic acid mediated signaling pathway|GO:0009867|17637675|IMP  go_function molecular_function|GO:0003674||ND  product JAZ3 (JASMONATE-ZIM-DOMAIN PROTEIN 3)  note TIFY6B; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: jasmonic acid mediated signaling pathway; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: JAZ4 (JASMONATE-ZIM-DOMAIN PROTEIN 4) (TAIR:AT1G48500.1); Has 281 Blast hits to 205 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 194; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT3G17860.2p  transcript_id AT3G17860.2  protein_id AT3G17860.2p  transcript_id AT3G17860.2  
At3g17860	chr3:006121143	0.0	W/6121143-6121328,6121589-6121803,6121879-6121969,6122051-6122354,6122452-6122512,6122589-6122691	AT3G17860.3  CDS  gene_syn JAI3, JASMONATE-INSENSITIVE 3, JASMONATE-ZIM-DOMAIN PROTEIN 3, JAZ3, TIFY6B  gene JAZ3  function JAZs are direct targets of the SCFCOI1 E3 ubiquitin-ligase and JA treatment induces their proteasome-mediated degradation. Furthermore, JAI3 negatively regulates the key transcriptional activator of JA responses, AtMYC2. The C-terminal portion of JAZ3, including the Jas domain, appears to be important for JAZ3-COI1 binding in the presence of coronatine.  go_component chloroplast|GO:0009507||IEA  go_process jasmonic acid mediated signaling pathway|GO:0009867|17637675|IMP  go_function molecular_function|GO:0003674||ND  product JAZ3 (JASMONATE-ZIM-DOMAIN PROTEIN 3)  note TIFY6B; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: jasmonic acid mediated signaling pathway; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: JAZ4 (JASMONATE-ZIM-DOMAIN PROTEIN 4) (TAIR:AT1G48500.1); Has 237 Blast hits to 205 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 194; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT3G17860.3p  transcript_id AT3G17860.3  protein_id AT3G17860.3p  transcript_id AT3G17860.3  
At3g17880	chr3:006123534	0.0	W/6123534-6123646,6123766-6123799,6123961-6124101,6124197-6124284,6124361-6124441,6124525-6124589,6124749-6124889,6124976-6125089,6125293-6125323,6125779-6126113	AT3G17880.1  CDS  gene_syn ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, AT3G17870, ATHIP2, ATTDX, HIP, HSC-70 INTERACTING PROTEIN, TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN  gene ATTDX  function Encodes a thioredoxin-like disulfide reductase. The protein interacts with the yeast Hsp70 protein Ssb2 in vitro. This interaction is sensitive to the redox status of the thioredoxin domain of AtTDX.  go_process cell redox homeostasis|GO:0045454||IEA  go_component cellular_component|GO:0005575||ND  go_function protein binding|GO:0005515|12433921|IPI  go_function oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor|GO:0016671|12433921|IDA  product ATTDX (TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN); oxidoreductase, acting on sulfur group of donors, disulfide as acceptor / protein binding  note TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN (ATTDX); FUNCTIONS IN: protein binding, oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Thioredoxin fold (InterPro:IPR012335), Tetratricopeptide-like helical (InterPro:IPR011990), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like (InterPro:IPR017936), Tetratricopeptide region (InterPro:IPR013026), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1); binding (TAIR:AT4G22670.1); Has 17302 Blast hits to 15639 proteins in 1711 species: Archae - 246; Bacteria - 6945; Metazoa - 3312; Fungi - 1010; Plants - 1493; Viruses - 3; Other Eukaryotes - 4293 (source: NCBI BLink).  protein_id AT3G17880.1p  transcript_id AT3G17880.1  protein_id AT3G17880.1p  transcript_id AT3G17880.1  
At3g17880	chr3:006123534	0.0	W/6123534-6123646,6123766-6123799,6123982-6124101,6124197-6124284,6124361-6124441,6124525-6124589,6124749-6124889,6124976-6125089,6125293-6125323,6125779-6126113	AT3G17880.2  CDS  gene_syn ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, AT3G17870, ATHIP2, ATTDX, HIP, HSC-70 INTERACTING PROTEIN, TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN  gene ATTDX  function Encodes a thioredoxin-like disulfide reductase. The protein interacts with the yeast Hsp70 protein Ssb2 in vitro. This interaction is sensitive to the redox status of the thioredoxin domain of AtTDX.  go_process cell redox homeostasis|GO:0045454||IEA  go_component cellular_component|GO:0005575||ND  go_function protein binding|GO:0005515|12433921|IPI  go_function oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor|GO:0016671|12433921|IDA  product ATTDX (TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN); oxidoreductase, acting on sulfur group of donors, disulfide as acceptor / protein binding  note TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN (ATTDX); FUNCTIONS IN: protein binding, oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Thioredoxin fold (InterPro:IPR012335), Tetratricopeptide-like helical (InterPro:IPR011990), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Tetratricopeptide region (InterPro:IPR013026), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1); binding (TAIR:AT4G22670.1); Has 17249 Blast hits to 15596 proteins in 1713 species: Archae - 246; Bacteria - 6937; Metazoa - 3301; Fungi - 995; Plants - 1482; Viruses - 3; Other Eukaryotes - 4285 (source: NCBI BLink).  protein_id AT3G17880.2p  transcript_id AT3G17880.2  protein_id AT3G17880.2p  transcript_id AT3G17880.2  
At3g17890	chr3:006127227	0.0	W/6127227-6127508,6127580-6127759	AT3G17890.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 13 Blast hits to 13 proteins in 6 species: Archae - 0; Bacteria - 4; Metazoa - 5; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G17890.1p  transcript_id AT3G17890.1  protein_id AT3G17890.1p  transcript_id AT3G17890.1  
At3g17900	chr3:006128983	0.0	W/6128983-6129280,6129382-6129459,6129550-6130091,6130309-6130917,6131007-6131161,6131505-6131695,6131792-6131925,6132271-6132605,6132690-6132793,6132999-6133069	AT3G17900.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 25 Blast hits to 24 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 19; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G17900.1p  transcript_id AT3G17900.1  protein_id AT3G17900.1p  transcript_id AT3G17900.1  
At3g17910	chr3:006133581	0.0	W/6133581-6133776,6133871-6133971,6134480-6134718,6135202-6135376,6135598-6135881,6135984-6136053	AT3G17910.1  CDS  gene_syn SURF1, SURFEIT 1  gene SURF1  function Surfeit 1 (SURF1) mRNA. Similar to human SURF1 which is known to be involved in cytochrome c oxidase assembly.  go_component mitochondrion|GO:0005739|14671022|IDA  go_process respiratory chain complex IV assembly|GO:0008535||ISS  go_function molecular_function|GO:0003674||ND  product SURF1 (SURFEIT 1)  note SURFEIT 1 (SURF1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: respiratory chain complex IV assembly; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Surfeit locus 1 (InterPro:IPR002994); BEST Arabidopsis thaliana protein match is: cytochrome c oxidase assembly protein surfeit-related (TAIR:AT1G48510.1); Has 1319 Blast hits to 1317 proteins in 343 species: Archae - 0; Bacteria - 474; Metazoa - 109; Fungi - 83; Plants - 20; Viruses - 0; Other Eukaryotes - 633 (source: NCBI BLink).  protein_id AT3G17910.1p  transcript_id AT3G17910.1  protein_id AT3G17910.1p  transcript_id AT3G17910.1  
At3g17920	chr3:006137255	0.0	W/6137255-6137695,6137983-6138240,6138482-6138724,6138842-6138991,6139287-6140461,6140789-6140862,6140963-6141044,6141113-6141238,6141325-6141431,6141572-6141732,6141808-6142023	AT3G17920.1  CDS  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT1G48540.1); Has 5858 Blast hits to 4436 proteins in 310 species: Archae - 0; Bacteria - 1517; Metazoa - 3005; Fungi - 319; Plants - 276; Viruses - 6; Other Eukaryotes - 735 (source: NCBI BLink).  protein_id AT3G17920.1p  transcript_id AT3G17920.1  protein_id AT3G17920.1p  transcript_id AT3G17920.1  
At3g17920	chr3:006137838	0.0	W/6137838-6137888,6137983-6138240,6138482-6138724,6138842-6138991,6139287-6140461,6140789-6140862,6140963-6141044,6141113-6141238,6141325-6141431,6141572-6141732,6141808-6142023	AT3G17920.2  CDS  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT1G48540.1); Has 6478 Blast hits to 4195 proteins in 294 species: Archae - 0; Bacteria - 2217; Metazoa - 2917; Fungi - 385; Plants - 221; Viruses - 0; Other Eukaryotes - 738 (source: NCBI BLink).  protein_id AT3G17920.2p  transcript_id AT3G17920.2  protein_id AT3G17920.2p  transcript_id AT3G17920.2  
At3g17930	chr3:006143150	0.0	C/6143150-6143246,6142909-6143054,6142730-6142819,6142473-6142631,6142307-6142387	AT3G17930.1  CDS  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 195 Blast hits to 195 proteins in 62 species: Archae - 0; Bacteria - 98; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT3G17930.1p  transcript_id AT3G17930.1  protein_id AT3G17930.1p  transcript_id AT3G17930.1  
At3g17940	chr3:006145127	0.0	C/6145127-6145244,6144984-6145033,6144615-6144741,6144411-6144518,6143707-6144329	AT3G17940.1  CDS  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process hexose metabolic process|GO:0019318||IEA  go_function catalytic activity|GO:0003824||IEA  go_function isomerase activity|GO:0016853||IEA  go_function carbohydrate binding|GO:0030246||IEA  go_component cellular_component|GO:0005575||ND  go_process galactose metabolic process|GO:0006012||ISS  go_function aldose 1-epimerase activity|GO:0004034||ISS  product aldose 1-epimerase family protein  note aldose 1-epimerase family protein; FUNCTIONS IN: isomerase activity, carbohydrate binding, aldose 1-epimerase activity, catalytic activity; INVOLVED IN: galactose metabolic process, hexose metabolic process, carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Aldose 1-epimerase (InterPro:IPR008183), Aldose-1-epimerase (InterPro:IPR015443), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718); BEST Arabidopsis thaliana protein match is: aldose 1-epimerase family protein (TAIR:AT3G47800.1); Has 2630 Blast hits to 2627 proteins in 708 species: Archae - 12; Bacteria - 1382; Metazoa - 249; Fungi - 162; Plants - 126; Viruses - 0; Other Eukaryotes - 699 (source: NCBI BLink).  protein_id AT3G17940.1p  transcript_id AT3G17940.1  protein_id AT3G17940.1p  transcript_id AT3G17940.1  
At3g17950	chr3:006146311	0.0	W/6146311-6146379,6146603-6147169	AT3G17950.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; Has 25 Blast hits to 25 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G17950.1p  transcript_id AT3G17950.1  protein_id AT3G17950.1p  transcript_id AT3G17950.1  
At3g17950	chr3:006146651	0.0	W/6146651-6147169	AT3G17950.2  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; Has 17 Blast hits to 17 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G17950.2p  transcript_id AT3G17950.2  protein_id AT3G17950.2p  transcript_id AT3G17950.2  
At3g17970	chr3:006148030	0.0	W/6148030-6148232,6148783-6148935,6149069-6149193,6149547-6149672,6149860-6150042,6150126-6150270,6150350-6150518,6150623-6150757,6150901-6151101,6151203-6151330,6151417-6151468,6151570-6151639,6151715-6151794	AT3G17970.1  CDS  gene_syn AT3G17960, Arabidopsis thaliana translocon at the outer membrane of chloroplasts 64-III, atToc64-III  gene atToc64-III  go_component chloroplast|GO:0009507|18431481|IDA  go_function binding|GO:0005488||IEA  go_function carbon-nitrogen ligase activity, with glutamine as amido-N-donor|GO:0016884||IEA  product atToc64-III (Arabidopsis thaliana translocon at the outer membrane of chloroplasts 64-III); binding / carbon-nitrogen ligase, with glutamine as amido-N-donor  note Arabidopsis thaliana translocon at the outer membrane of chloroplasts 64-III (atToc64-III); FUNCTIONS IN: binding, carbon-nitrogen ligase activity, with glutamine as amido-N-donor; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Amidase signature enzyme (InterPro:IPR000120), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: ATTOC64-V (ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V); amidase/ binding / carbon-nitrogen ligase, with glutamine as amido-N-donor (TAIR:AT5G09420.1); Has 23124 Blast hits to 19628 proteins in 1532 species: Archae - 333; Bacteria - 9073; Metazoa - 3526; Fungi - 1641; Plants - 1212; Viruses - 0; Other Eukaryotes - 7339 (source: NCBI BLink).  protein_id AT3G17970.1p  transcript_id AT3G17970.1  protein_id AT3G17970.1p  transcript_id AT3G17970.1  
At3g17980	chr3:006152417	0.0	W/6152417-6152563,6152648-6152743,6152825-6153115	AT3G17980.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT1G48590.1); Has 3664 Blast hits to 3174 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 2342; Fungi - 407; Plants - 620; Viruses - 0; Other Eukaryotes - 295 (source: NCBI BLink).  protein_id AT3G17980.1p  transcript_id AT3G17980.1  protein_id AT3G17980.1p  transcript_id AT3G17980.1  
At3g17998	chr3:006154434	0.0	W/6154434-6154511	AT3G17998.1  CDS  gene_syn CPuORF30, Conserved peptide upstream open reading frame 30  gene CPuORF30  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF30 represents a conserved upstream opening reading frame relative to major ORF AT3G18000.1  product CPuORF30 (Conserved peptide upstream open reading frame 30)  note Conserved peptide upstream open reading frame 30 (CPuORF30); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G17998.1p  transcript_id AT3G17998.1  protein_id AT3G17998.1p  transcript_id AT3G17998.1  
At3g18000	chr3:006154578	0.0	W/6154578-6154593,6154722-6154837,6155020-6155157,6155256-6155393,6155483-6155626,6155867-6155977,6156070-6156211,6156304-6156584,6156661-6156822,6156904-6156957,6157049-6157123,6157233-6157331	AT3G18000.1  CDS  gene_syn AT3G17990, N-METHYLTRANSFERASE 1, NMT1, PEAMT, S-ADENOSYL-L-METHIONINE:PHOSPHOETHANOLAMINE N-METHYLTRANSFERASE, S-ADENOSYLMETHIONINE:PHOSPHO-ETHANOLAMINE, XIPOTL 1, XPL1  gene XPL1  function Arabidopsis thaliana N-methyltransferase-like protein mRNA.  go_component cytoplasm|GO:0005737|11115895|ISS  go_process phosphatidylcholine biosynthetic process|GO:0006656|11115895|IGI  go_process pollen development|GO:0009555|15295103|IMP  go_process response to salt stress|GO:0009651|12215503|IMP  go_process unidimensional cell growth|GO:0009826|15295103|IMP  go_process choline biosynthetic process|GO:0042425|15295103|IMP  go_process post-embryonic root development|GO:0048528|15295103|IMP  go_function phosphoethanolamine N-methyltransferase activity|GO:0000234|11115895|IGI  go_function phosphoethanolamine N-methyltransferase activity|GO:0000234||ISS  go_function methyltransferase activity|GO:0008168|11115895|ISS  product XPL1 (XIPOTL 1); methyltransferase/ phosphoethanolamine N-methyltransferase  note XIPOTL 1 (XPL1); FUNCTIONS IN: methyltransferase activity, phosphoethanolamine N-methyltransferase activity; INVOLVED IN: in 6 processes; LOCATED IN: cytoplasm; EXPRESSED IN: primary root apical meristem, primary root elongation zone, pollen tube; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: phosphoethanolamine N-methyltransferase 2, putative (NMT2) (TAIR:AT1G48600.2); Has 14083 Blast hits to 13890 proteins in 1507 species: Archae - 358; Bacteria - 9203; Metazoa - 227; Fungi - 549; Plants - 321; Viruses - 8; Other Eukaryotes - 3417 (source: NCBI BLink).  protein_id AT3G18000.1p  transcript_id AT3G18000.1  protein_id AT3G18000.1p  transcript_id AT3G18000.1  
At3g18010	chr3:006163048	0.0	C/6163048-6163183,6162582-6162944,6162391-6162452,6161155-6161646	AT3G18010.1  CDS  gene_syn WOX1, WUSCHEL related homeobox 1  gene WOX1  function Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. Its mRNA is expressed in the initiating vascular primordium of the cotyledons during heart and torpedo stages.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product WOX1 (WUSCHEL related homeobox 1); transcription factor  note WUSCHEL related homeobox 1 (WOX1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: cotyledon primordium, shoot; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: PFS2 (PRETTY FEW SEEDS 2); transcription factor (TAIR:AT2G01500.1); Has 329 Blast hits to 329 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 329; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G18010.1p  transcript_id AT3G18010.1  protein_id AT3G18010.1p  transcript_id AT3G18010.1  
At3g18020	chr3:006165449	0.0	W/6165449-6167515	AT3G18020.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62930.1); Has 16729 Blast hits to 4758 proteins in 131 species: Archae - 2; Bacteria - 12; Metazoa - 74; Fungi - 181; Plants - 15973; Viruses - 0; Other Eukaryotes - 487 (source: NCBI BLink).  protein_id AT3G18020.1p  transcript_id AT3G18020.1  protein_id AT3G18020.1p  transcript_id AT3G18020.1  
At3g18030	chr3:006168294	0.0	C/6168294-6168629,6167883-6168176	AT3G18030.1  CDS  gene_syn ARABIDOPSIS THALIANA HAL3-LIKE PROTEIN A, ATHAL3, ATHAL3A, HAL3, HAL3-LIKE PROTEIN A, HAL3A, HALOTOLERANCE DETERMINANT 3  gene HAL3A  function flavin mononucleotide flavoprotein involved in salt and osmotic tolerance HAL3A encodes for phosphopantothenoylcysteine decarboxylase being involved in Coenzyme A biosynthesis. HAL3A is predominant over another gene with the presumably same function (HAL3B).  go_component cellular_component|GO:0005575||ND  go_process coenzyme A biosynthetic process|GO:0015937|16415216|TAS  go_process hyperosmotic salinity response|GO:0042538|10652125|IEP  go_process hyperosmotic salinity response|GO:0042538|10652125|IMP  go_function phosphopantothenoylcysteine decarboxylase activity|GO:0004633|12860978|IDA  go_function phosphopantothenoylcysteine decarboxylase activity|GO:0004633|16415216|TAS  go_function FMN binding|GO:0010181|10986463|ISS  product ATHAL3A; FMN binding / phosphopantothenoylcysteine decarboxylase  note ATHAL3A; FUNCTIONS IN: phosphopantothenoylcysteine decarboxylase activity, FMN binding; INVOLVED IN: hyperosmotic salinity response, coenzyme A biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Flavoprotein (InterPro:IPR003382); BEST Arabidopsis thaliana protein match is: ATHAL3B; FMN binding / electron carrier/ phosphopantothenoylcysteine decarboxylase (TAIR:AT1G48605.1); Has 4650 Blast hits to 4650 proteins in 1330 species: Archae - 115; Bacteria - 2194; Metazoa - 101; Fungi - 179; Plants - 41; Viruses - 5; Other Eukaryotes - 2015 (source: NCBI BLink).  protein_id AT3G18030.1p  transcript_id AT3G18030.1  protein_id AT3G18030.1p  transcript_id AT3G18030.1  
At3g18035	chr3:006171349	0.0	C/6171349-6171558,6170381-6171262,6169772-6169837,6169384-6169668	AT3G18035.1  CDS  gene_syn HISTONE H1, HON4  gene HON4  function A linker histone like protein  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_component nucleosome|GO:0000786||ISS  go_process nucleosome assembly|GO:0006334||ISS  go_function DNA binding|GO:0003677||ISS  product HON4; DNA binding  note HON4; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), AT hook, DNA-binding, conserved site (InterPro:IPR017956), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: HON5 (High Mobility Group Family A 5); DNA binding (TAIR:AT1G48620.1); Has 1936 Blast hits to 1842 proteins in 314 species: Archae - 0; Bacteria - 296; Metazoa - 802; Fungi - 281; Plants - 360; Viruses - 17; Other Eukaryotes - 180 (source: NCBI BLink).  protein_id AT3G18035.1p  transcript_id AT3G18035.1  protein_id AT3G18035.1p  transcript_id AT3G18035.1  
At3g18040	chr3:006174800	0.0	W/6174800-6174817,6175495-6175903,6175996-6176123,6176215-6176274,6176379-6176528,6176841-6176996,6177110-6177247,6177391-6177464,6177556-6177657,6177766-6177997,6178085-6178150	AT3G18040.1  CDS  gene_syn MAP KINASE 9, MPK9  gene MPK9  function MAP KINASE 9  go_component mitochondrion|GO:0005739|14671022|IDA  go_process signal transduction|GO:0007165|12119167|IC  go_function MAP kinase activity|GO:0004707|11544109|ISS  go_function MAP kinase activity|GO:0004707|12119167|ISS  product MPK9 (MAP KINASE 9); MAP kinase  note MAP KINASE 9 (MPK9); FUNCTIONS IN: MAP kinase activity; INVOLVED IN: signal transduction; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: ATMPK8; MAP kinase (TAIR:AT1G18150.2); Has 89591 Blast hits to 88569 proteins in 3014 species: Archae - 49; Bacteria - 7786; Metazoa - 39071; Fungi - 8139; Plants - 17116; Viruses - 535; Other Eukaryotes - 16895 (source: NCBI BLink).  protein_id AT3G18040.1p  transcript_id AT3G18040.1  protein_id AT3G18040.1p  transcript_id AT3G18040.1  
At3g18040	chr3:006175741	0.0	W/6175741-6175903,6175996-6176123,6176215-6176274,6176379-6176528,6176841-6176996,6177110-6177247,6177391-6177464,6177556-6177657,6177766-6177997,6178085-6178150	AT3G18040.2  CDS  gene_syn MAP KINASE 9, MPK9  gene MPK9  function MAP KINASE 9  go_component mitochondrion|GO:0005739|14671022|IDA  go_process signal transduction|GO:0007165|12119167|IC  go_function MAP kinase activity|GO:0004707|11544109|ISS  go_function MAP kinase activity|GO:0004707|12119167|ISS  product MPK9 (MAP KINASE 9); MAP kinase  note MAP KINASE 9 (MPK9); FUNCTIONS IN: MAP kinase activity; INVOLVED IN: signal transduction; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATMPK15; MAP kinase/ kinase (TAIR:AT1G73670.1); Has 78328 Blast hits to 77653 proteins in 2029 species: Archae - 39; Bacteria - 6247; Metazoa - 33983; Fungi - 7653; Plants - 14912; Viruses - 394; Other Eukaryotes - 15100 (source: NCBI BLink).  protein_id AT3G18040.2p  transcript_id AT3G18040.2  protein_id AT3G18040.2p  transcript_id AT3G18040.2  
At3g18050	chr3:006180931	0.0	W/6180931-6181596,6182252-6182593	AT3G18050.1  CDS  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28100.1); Has 35 Blast hits to 35 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G18050.1p  transcript_id AT3G18050.1  protein_id AT3G18050.1p  transcript_id AT3G18050.1  
At3g18060	chr3:006183880	0.0	W/6183880-6184268,6184494-6184655,6184773-6184959,6185240-6185665,6186039-6186446,6186531-6186788	AT3G18060.1  CDS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), Nitrous oxide reductase, N-terminal (InterPro:IPR011045); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT2G01330.1); Has 34874 Blast hits to 15896 proteins in 540 species: Archae - 42; Bacteria - 5137; Metazoa - 15525; Fungi - 6232; Plants - 3080; Viruses - 0; Other Eukaryotes - 4858 (source: NCBI BLink).  protein_id AT3G18060.1p  transcript_id AT3G18060.1  protein_id AT3G18060.1p  transcript_id AT3G18060.1  
At3g18070	chr3:006187294	0.0	W/6187294-6187507,6187601-6187659,6187771-6187846,6187931-6188002,6188085-6188167,6188266-6188517,6188611-6188726,6188817-6189037,6189280-6189311,6189404-6189506,6189574-6189754,6189851-6189947	AT3G18070.1  CDS  gene_syn BETA GLUCOSIDASE 43, BGLU43  gene BGLU43  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU43 (BETA GLUCOSIDASE 43); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 43 (BGLU43); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU44 (B-S GLUCOSIDASE 44); (R)-amygdalin beta-glucosidase/ 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase/ beta-gentiobiose beta-glucosidase/ cellobiose glucosidase/ esculin beta-glucosidase/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT3G18080.1); Has 5757 Blast hits to 5525 proteins in 798 species: Archae - 100; Bacteria - 3122; Metazoa - 605; Fungi - 134; Plants - 855; Viruses - 0; Other Eukaryotes - 941 (source: NCBI BLink).  protein_id AT3G18070.1p  transcript_id AT3G18070.1  protein_id AT3G18070.1p  transcript_id AT3G18070.1  
At3g18070	chr3:006187294	0.0	W/6187294-6187507,6187601-6187659,6188266-6188517,6188611-6188726,6188817-6189037,6189280-6189311,6189404-6189506,6189574-6189754,6189851-6189947	AT3G18070.2  CDS  gene_syn BETA GLUCOSIDASE 43, BGLU43  gene BGLU43  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU43 (BETA GLUCOSIDASE 43); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 43 (BGLU43); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU44 (B-S GLUCOSIDASE 44); (R)-amygdalin beta-glucosidase/ 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase/ beta-gentiobiose beta-glucosidase/ cellobiose glucosidase/ esculin beta-glucosidase/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT3G18080.1); Has 7798 Blast hits to 5240 proteins in 788 species: Archae - 90; Bacteria - 4269; Metazoa - 949; Fungi - 226; Plants - 1392; Viruses - 0; Other Eukaryotes - 872 (source: NCBI BLink).  protein_id AT3G18070.2p  transcript_id AT3G18070.2  protein_id AT3G18070.2p  transcript_id AT3G18070.2  
At3g18080	chr3:006191586	0.0	W/6191586-6191826,6191900-6191958,6192066-6192141,6192219-6192290,6192369-6192456,6192530-6192782,6192899-6193014,6193113-6193333,6193424-6193455,6193548-6193650,6193765-6193945,6194028-6194124	AT3G18080.1  CDS  gene_syn B-S GLUCOSIDASE 44, BGLU44  gene BGLU44  go_component cell wall|GO:0005618|15593128|IDA  go_component cell wall|GO:0005618|16287169|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function cellobiose glucosidase activity|GO:0080079|15604686|IDA  go_function (R)-amygdalin beta-glucosidase activity|GO:0080080|15604686|IDA  go_function 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity|GO:0080081|15604686|IDA  go_function esculin beta-glucosidase activity|GO:0080082|15604686|IDA  go_function beta-gentiobiose beta-glucosidase activity|GO:0080083|15604686|IDA  product BGLU44 (B-S GLUCOSIDASE 44); (R)-amygdalin beta-glucosidase/ 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase/ beta-gentiobiose beta-glucosidase/ cellobiose glucosidase/ esculin beta-glucosidase/ hydrolase, hydrolyzing O-glycosyl compounds  note B-S GLUCOSIDASE 44 (BGLU44); FUNCTIONS IN: in 6 functions; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cytosolic ribosome, cell wall, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU43 (BETA GLUCOSIDASE 43); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT3G18070.1); Has 5752 Blast hits to 5520 proteins in 798 species: Archae - 100; Bacteria - 3116; Metazoa - 606; Fungi - 134; Plants - 855; Viruses - 0; Other Eukaryotes - 941 (source: NCBI BLink).  protein_id AT3G18080.1p  transcript_id AT3G18080.1  protein_id AT3G18080.1p  transcript_id AT3G18080.1  
At3g18090	chr3:006195323	0.0	W/6195323-6195385,6195757-6195984,6196159-6197039,6197423-6197714,6197854-6198747,6198843-6199150,6199703-6200204	AT3G18090.1  CDS  gene_syn NRPD2B, NUCLEAR RNA POLYMERASE D 2B  gene NRPD2B  function Encodes a subunit of RNA polymerase IV (aka RNA polymerase D). NRPD2b is closely related to NRPD2a, but has lower levels of transcription and does not affect endogenous siRNA when mutated.  go_component membrane|GO:0016020|17432890|IDA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_function ribonucleoside binding|GO:0032549||IEA  go_process transcription|GO:0006350||ISS  go_process gene silencing|GO:0016458|15692015|IMP  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product NRPD2b; DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding  note NRPD2b; FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding; INVOLVED IN: gene silencing, transcription; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, subunit 2, domain 6 (InterPro:IPR007120), RNA polymerase Rpb2, domain 7 (InterPro:IPR007641), RNA polymerase, beta subunit, protrusion (InterPro:IPR007644), DNA-directed RNA polymerase, subunit 2 (InterPro:IPR015712), RNA polymerase Rpb2, domain 3 (InterPro:IPR007645), RNA polymerase Rpb2, domain 2 (InterPro:IPR007642), RNA polymerase Rpb2, domain 4 (InterPro:IPR007646), RNA polymerase, beta subunit, conserved site (InterPro:IPR007121), RNA polymerase Rpb2, domain 5 (InterPro:IPR007647); BEST Arabidopsis thaliana protein match is: NRPD2A; DNA binding / DNA-directed RNA polymerase (TAIR:AT3G23780.1); Has 24537 Blast hits to 20236 proteins in 6224 species: Archae - 271; Bacteria - 9474; Metazoa - 379; Fungi - 4888; Plants - 1814; Viruses - 201; Other Eukaryotes - 7510 (source: NCBI BLink).  protein_id AT3G18090.1p  transcript_id AT3G18090.1  protein_id AT3G18090.1p  transcript_id AT3G18090.1  
At3g18100	chr3:006200689	0.0	W/6200689-6201154,6201640-6202112,6202247-6202446,6202582-6202734,6202866-6203180,6203559-6204062,6204151-6204583	AT3G18100.1  CDS  gene_syn AtMYB4R1, MYB4R1, myb domain protein 4R1  gene MYB4R1  function Member of the R2R3 transcription factor gene family.  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB4R1 (myb domain protein 4R1); transcription factor  note myb domain protein 4R1 (MYB4R1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: MYB3R-3 (myb domain protein 3R-3); DNA binding / transcription factor (TAIR:AT3G09370.2); Has 16341 Blast hits to 6133 proteins in 373 species: Archae - 0; Bacteria - 1500; Metazoa - 1765; Fungi - 937; Plants - 7953; Viruses - 9; Other Eukaryotes - 4177 (source: NCBI BLink).  protein_id AT3G18100.1p  transcript_id AT3G18100.1  protein_id AT3G18100.1p  transcript_id AT3G18100.1  
At3g18100	chr3:006201813	0.0	W/6201813-6202112,6202247-6202446,6202582-6202734,6202866-6203180,6203559-6204062,6204151-6204583	AT3G18100.2  CDS  gene_syn AtMYB4R1, MYB4R1, myb domain protein 4R1  gene MYB4R1  function Member of the R2R3 transcription factor gene family.  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB4R1 (myb domain protein 4R1); transcription factor  note myb domain protein 4R1 (MYB4R1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: MYB3R-3 (myb domain protein 3R-3); DNA binding / transcription factor (TAIR:AT3G09370.2); Has 14748 Blast hits to 5624 proteins in 351 species: Archae - 0; Bacteria - 4; Metazoa - 1735; Fungi - 893; Plants - 7949; Viruses - 9; Other Eukaryotes - 4158 (source: NCBI BLink).  protein_id AT3G18100.2p  transcript_id AT3G18100.2  protein_id AT3G18100.2p  transcript_id AT3G18100.2  
At3g18110	chr3:006206174	0.0	C/6206174-6209691,6205814-6206014,6205626-6205683,6204940-6205452	AT3G18110.1  CDS  gene_syn EMB1270, embryo defective 1270  gene EMB1270  go_component chloroplast|GO:0009507||IEA  go_process embryonic development ending in seed dormancy|GO:0009793|15647901|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product EMB1270 (embryo defective 1270)  note embryo defective 1270 (EMB1270); INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: PGR3 (PROTON GRADIENT REGULATION 3) (TAIR:AT4G31850.1); Has 35732 Blast hits to 6202 proteins in 197 species: Archae - 10; Bacteria - 34; Metazoa - 1105; Fungi - 778; Plants - 32150; Viruses - 0; Other Eukaryotes - 1655 (source: NCBI BLink).  protein_id AT3G18110.1p  transcript_id AT3G18110.1  protein_id AT3G18110.1p  transcript_id AT3G18110.1  
At3g18120	chr3:006210090	0.0	C/6210090-6210572	AT3G18120.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G17620.1); Has 356 Blast hits to 344 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 356; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G18120.1p  transcript_id AT3G18120.1  protein_id AT3G18120.1p  transcript_id AT3G18120.1  
At3g18130	chr3:006211493	0.0	C/6211493-6212371,6211109-6211210	AT3G18130.1  CDS  gene_syn RACK1C_AT, RECEPTOR FOR ACTIVATED C KINASE 1 C  gene RACK1C_AT  function Encodes a protein with similarity to mammalian RACKs. RACKs function to shuttle activated protein kinase C to different subcellular sites and may also function as a scaffold through physical interactions with other proteins. RACK1C has no phenotype on its own and probably acts redundantly with RACK1A and RACK1B.  go_component nucleolus|GO:0005730|15496452|IDA  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_process root development|GO:0048364|18947417|IGI  go_process shoot development|GO:0048367|18947417|IGI  go_function nucleotide binding|GO:0000166||ISS  product RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C); nucleotide binding  note RECEPTOR FOR ACTIVATED C KINASE 1 C (RACK1C_AT); FUNCTIONS IN: nucleotide binding; INVOLVED IN: shoot development, root development; LOCATED IN: nucleolus, heterotrimeric G-protein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: RACK1B_AT (RECEPTOR FOR ACTIVATED C KINASE 1 B); nucleotide binding (TAIR:AT1G48630.1); Has 65242 Blast hits to 27312 proteins in 714 species: Archae - 56; Bacteria - 6807; Metazoa - 29683; Fungi - 13105; Plants - 6052; Viruses - 6; Other Eukaryotes - 9533 (source: NCBI BLink).  protein_id AT3G18130.1p  transcript_id AT3G18130.1  protein_id AT3G18130.1p  transcript_id AT3G18130.1  
At3g18140	chr3:006214460	0.0	C/6214460-6214567,6214274-6214375,6214074-6214186,6213850-6213919,6213598-6213675,6213411-6213527,6213225-6213311	AT3G18140.2  CDS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT2G22040.1); Has 29694 Blast hits to 14848 proteins in 531 species: Archae - 54; Bacteria - 5021; Metazoa - 12756; Fungi - 5811; Plants - 2111; Viruses - 0; Other Eukaryotes - 3941 (source: NCBI BLink).  protein_id AT3G18140.2p  transcript_id AT3G18140.2  protein_id AT3G18140.2p  transcript_id AT3G18140.2  
At3g18140	chr3:006214460	0.0	C/6214460-6214567,6214274-6214375,6214074-6214186,6213850-6213919,6213598-6213675,6213411-6213527,6213229-6213311,6213069-6213148,6212930-6212989,6212743-6212849	AT3G18140.1  CDS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT2G22040.1); Has 56812 Blast hits to 22045 proteins in 616 species: Archae - 66; Bacteria - 6917; Metazoa - 26575; Fungi - 10652; Plants - 4787; Viruses - 0; Other Eukaryotes - 7815 (source: NCBI BLink).  protein_id AT3G18140.1p  transcript_id AT3G18140.1  protein_id AT3G18140.1p  transcript_id AT3G18140.1  
At3g18145	chr3:006214980	0.0	W/6214980-6217276	AT3G18145.1  pseudogenic_transcript  pseudo  gene_syn MRC8.13  note pseudogene, similar to putative carbamoyl phosphate synthase small subunit, blastp match of 89% identity and 4.4e-115 P-value to GP|21535793|emb|CAC85725.1||AJ319873 putative carbamoyl phosphate synthase small subunit {Nicotiana tabacum}  
At3g18150	chr3:006217929	0.0	W/6217929-6218848,6218959-6219132,6219225-6219500	AT3G18150.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G02910.1).  protein_id AT3G18150.1p  transcript_id AT3G18150.1  protein_id AT3G18150.1p  transcript_id AT3G18150.1  
At3g18160	chr3:006220918	0.0	W/6220918-6220931,6221083-6221244,6221336-6221526,6221624-6221754,6222043-6222170,6222326-6222532,6222680-6222923	AT3G18160.1  CDS  gene_syn MRC8.15, PEX3-1, peroxin 3-1  go_component mitochondrion|GO:0005739||IEA  go_component integral to peroxisomal membrane|GO:0005779||IEA  go_component peroxisome|GO:0005777||ISS  go_process peroxisome organization|GO:0007031|17478547|IMP  go_function molecular_function|GO:0003674||ND  product peroxin-3 family protein  note peroxin 3-1 (PEX3-1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: peroxisome organization; LOCATED IN: mitochondrion, peroxisome, integral to peroxisomal membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peroxin-3 (InterPro:IPR006966); BEST Arabidopsis thaliana protein match is: peroxin-3 family protein (TAIR:AT1G48635.1); Has 228 Blast hits to 228 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 109; Fungi - 90; Plants - 25; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G18160.1p  transcript_id AT3G18160.1  protein_id AT3G18160.1p  transcript_id AT3G18160.1  
At3g18160	chr3:006220918	0.0	W/6220918-6220997,6221095-6221244,6221336-6221526,6221624-6221754,6222043-6222170,6222326-6222532,6222680-6222923	AT3G18160.3  CDS  gene_syn MRC8.15, PEX3-1, peroxin 3-1  go_component integral to peroxisomal membrane|GO:0005779||IEA  go_component peroxisome|GO:0005777||ISS  go_process peroxisome organization|GO:0007031|17478547|IMP  go_function molecular_function|GO:0003674||ND  product peroxin-3 family protein  note peroxin-3 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: peroxisome organization; LOCATED IN: peroxisome, integral to peroxisomal membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peroxin-3 (InterPro:IPR006966); BEST Arabidopsis thaliana protein match is: peroxin-3 family protein (TAIR:AT1G48635.1).  protein_id AT3G18160.3p  transcript_id AT3G18160.3  protein_id AT3G18160.3p  transcript_id AT3G18160.3  
At3g18160	chr3:006221322	0.0	W/6221322-6221526,6221624-6221754,6222043-6222170,6222326-6222532,6222680-6222923	AT3G18160.2  CDS  gene_syn MRC8.15, PEX3-1, peroxin 3-1  go_component integral to peroxisomal membrane|GO:0005779||IEA  go_component peroxisome|GO:0005777||ISS  go_process peroxisome organization|GO:0007031|17478547|IMP  go_function molecular_function|GO:0003674||ND  product peroxin-3 family protein  note peroxin 3-1 (PEX3-1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: peroxisome organization; LOCATED IN: peroxisome, integral to peroxisomal membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peroxin-3 (InterPro:IPR006966); BEST Arabidopsis thaliana protein match is: peroxin-3 family protein (TAIR:AT1G48635.1); Has 225 Blast hits to 225 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 107; Fungi - 89; Plants - 25; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G18160.2p  transcript_id AT3G18160.2  protein_id AT3G18160.2p  transcript_id AT3G18160.2  
At3g18165	chr3:006223248	0.0	W/6223248-6223487,6223921-6224099,6224193-6224276,6224633-6224702,6224798-6224931,6225022-6225076	AT3G18165.1  CDS  gene_syn MOS4, Modifier of snc1,4  gene MOS4  function Encodes MOS4 (Modifier of snc1, 4), a nuclear protein homologous to human Breast Cancer-Amplified Sequence (BCAS2). MOS4 interacts with AtCDC5 and PRL1. All three proteins are essential for plant innate immunity.  go_component nucleolus|GO:0005730|15496452|IDA  go_component nucleus|GO:0005634|17575050|IDA  go_process defense response signaling pathway, resistance gene-dependent|GO:0009870|17575050|IMP  go_process defense response signaling pathway, resistance gene-independent|GO:0010204|17575050|IMP  go_process defense response to bacterium|GO:0042742|17575050|IMP  go_process defense response to fungus|GO:0050832|17575050|IMP  go_function molecular_function|GO:0003674||ND  product MOS4 (Modifier of snc1,4)  note Modifier of snc1,4 (MOS4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response signaling pathway, resistance gene-independent, defense response signaling pathway, resistance gene-dependent, defense response to fungus, defense response to bacterium; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Breast carcinoma amplified sequence 2 (InterPro:IPR008409); Has 264 Blast hits to 264 proteins in 102 species: Archae - 0; Bacteria - 2; Metazoa - 140; Fungi - 50; Plants - 20; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT3G18165.1p  transcript_id AT3G18165.1  protein_id AT3G18165.1p  transcript_id AT3G18165.1  
At3g18170	chr3:006228393	0.0	W/6228393-6229547	AT3G18170.1  CDS  go_function transferase activity, transferring glycosyl groups|GO:0016757||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product transferase, transferring glycosyl groups  note transferase, transferring glycosyl groups; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycosyltransferase AER61, uncharacterized (InterPro:IPR007657); BEST Arabidopsis thaliana protein match is: transferase, transferring glycosyl groups (TAIR:AT3G18180.1); Has 482 Blast hits to 481 proteins in 98 species: Archae - 0; Bacteria - 32; Metazoa - 170; Fungi - 6; Plants - 245; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT3G18170.1p  transcript_id AT3G18170.1  protein_id AT3G18170.1p  transcript_id AT3G18170.1  
At3g18180	chr3:006230270	0.0	W/6230270-6230426,6230512-6230607,6230719-6231878	AT3G18180.1  CDS  go_function transferase activity, transferring glycosyl groups|GO:0016757||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product transferase, transferring glycosyl groups  note transferase, transferring glycosyl groups; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Glycosyltransferase AER61, uncharacterized (InterPro:IPR007657); BEST Arabidopsis thaliana protein match is: transferase, transferring glycosyl groups (TAIR:AT3G18170.1); Has 486 Blast hits to 486 proteins in 101 species: Archae - 0; Bacteria - 17; Metazoa - 188; Fungi - 6; Plants - 250; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT3G18180.1p  transcript_id AT3G18180.1  protein_id AT3G18180.1p  transcript_id AT3G18180.1  
At3g18190	chr3:006232226	0.0	W/6232226-6233836	AT3G18190.1  CDS  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function unfolded protein binding|GO:0051082||IEA  product chaperonin, putative  note chaperonin, putative; FUNCTIONS IN: unfolded protein binding, protein binding, ATP binding; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin TCP-1, conserved site (InterPro:IPR002194), T-complex protein 1, delta subunit (InterPro:IPR012717); BEST Arabidopsis thaliana protein match is: T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative (TAIR:AT1G24510.1); Has 14434 Blast hits to 14373 proteins in 2596 species: Archae - 394; Bacteria - 6460; Metazoa - 1798; Fungi - 981; Plants - 478; Viruses - 2; Other Eukaryotes - 4321 (source: NCBI BLink).  protein_id AT3G18190.1p  transcript_id AT3G18190.1  protein_id AT3G18190.1p  transcript_id AT3G18190.1  
At3g18200	chr3:006235482	0.0	C/6235482-6235531,6235001-6235394,6234755-6234906,6234509-6234674	AT3G18200.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_function molecular_function|GO:0003674||ND  product nodulin MtN21 family protein  note nodulin MtN21 family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT1G75500.1); Has 1869 Blast hits to 1862 proteins in 245 species: Archae - 6; Bacteria - 587; Metazoa - 6; Fungi - 0; Plants - 611; Viruses - 0; Other Eukaryotes - 659 (source: NCBI BLink).  protein_id AT3G18200.2p  transcript_id AT3G18200.2  protein_id AT3G18200.2p  transcript_id AT3G18200.2  
At3g18200	chr3:006235869	0.0	C/6235869-6236059,6235698-6235760,6235482-6235598,6235001-6235394,6234755-6234906,6234509-6234674	AT3G18200.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_function molecular_function|GO:0003674||ND  product nodulin MtN21 family protein  note nodulin MtN21 family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT1G75500.1); Has 2966 Blast hits to 2946 proteins in 502 species: Archae - 23; Bacteria - 1241; Metazoa - 6; Fungi - 3; Plants - 648; Viruses - 0; Other Eukaryotes - 1045 (source: NCBI BLink).  protein_id AT3G18200.1p  transcript_id AT3G18200.1  protein_id AT3G18200.1p  transcript_id AT3G18200.1  
At3g18210	chr3:006240064	0.0	C/6240064-6240396,6239749-6239796,6239485-6239661,6239261-6239411,6239070-6239156,6238822-6238946,6238609-6238727,6238380-6238491,6238264-6238296	AT3G18210.1  CDS  go_process protein metabolic process|GO:0019538||IEA  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||IEA  go_component cellular_component|GO:0005575||ND  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding; INVOLVED IN: protein metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (TAIR:AT1G22950.1); Has 311 Blast hits to 310 proteins in 60 species: Archae - 0; Bacteria - 16; Metazoa - 224; Fungi - 0; Plants - 36; Viruses - 3; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT3G18210.1p  transcript_id AT3G18210.1  protein_id AT3G18210.1p  transcript_id AT3G18210.1  
At3g18210	chr3:006240064	0.0	C/6240064-6240396,6239749-6239796,6239485-6239661,6239261-6239411,6239070-6239156,6238822-6238946,6238609-6238727,6238380-6238491,6238264-6238296	AT3G18210.2  CDS  go_process protein metabolic process|GO:0019538||IEA  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||IEA  go_component cellular_component|GO:0005575||ND  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding; INVOLVED IN: protein metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (TAIR:AT1G22950.1); Has 311 Blast hits to 310 proteins in 60 species: Archae - 0; Bacteria - 16; Metazoa - 224; Fungi - 0; Plants - 36; Viruses - 3; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT3G18210.2p  transcript_id AT3G18210.2  protein_id AT3G18210.2p  transcript_id AT3G18210.2  
At3g18215	chr3:006240968	0.0	W/6240968-6241132,6241789-6242358	AT3G18215.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF599 (InterPro:IPR006747); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24600.1); Has 180 Blast hits to 180 proteins in 49 species: Archae - 0; Bacteria - 72; Metazoa - 0; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT3G18215.1p  transcript_id AT3G18215.1  protein_id AT3G18215.1p  transcript_id AT3G18215.1  
At3g18217	chr3:006244529	0.0	C/6244529-6244693	AT3G18217.1  miRNA  gene_syn MICRORNA 157C, MIR157C  gene MIR157C  function Encodes a microRNA that targets several SPL family members, including SPL3,4, and 5. By regulating the expression of SPL3 (and probably also SPL4 and SPL5), this microRNA regulates vegetative phase change. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGACAGAAGAUAGAGAGCAC  go_component cellular_component|GO:0005575||ND  go_process gene silencing by miRNA|GO:0035195|15200956|TAS  go_function molecular_function|GO:0003674||ND  product MIR157C (MICRORNA 157C); miRNA  transcript_id AT3G18217.1  
At3g18220	chr3:006248355	0.0	W/6248355-6248570,6248682-6248769,6248903-6249012,6249113-6249206,6249297-6249545,6249630-6249799	AT3G18220.1  CDS  go_component membrane|GO:0016020||IEA  go_function catalytic activity|GO:0003824||IEA  go_process biological_process|GO:0008150||ND  go_function phosphatidate phosphatase activity|GO:0008195||ISS  product phosphatidic acid phosphatase family protein / PAP2 family protein  note phosphatidic acid phosphatase family protein / PAP2 family protein; FUNCTIONS IN: catalytic activity, phosphatidate phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: LPP2 (LIPID PHOSPHATE PHOSPHATASE 2); acid phosphatase/ phosphatidate phosphatase (TAIR:AT1G15080.1); Has 1568 Blast hits to 1566 proteins in 247 species: Archae - 2; Bacteria - 195; Metazoa - 790; Fungi - 260; Plants - 112; Viruses - 2; Other Eukaryotes - 207 (source: NCBI BLink).  protein_id AT3G18220.1p  transcript_id AT3G18220.1  protein_id AT3G18220.1p  transcript_id AT3G18220.1  
At3g18230	chr3:006251495	0.0	W/6251495-6252705,6253182-6253971	AT3G18230.1  CDS  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  product octicosapeptide/Phox/Bem1p (PB1) domain-containing protein  note octicosapeptide/Phox/Bem1p (PB1) domain-containing protein; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (TAIR:AT2G01190.1); Has 2870 Blast hits to 2394 proteins in 241 species: Archae - 2; Bacteria - 93; Metazoa - 1285; Fungi - 484; Plants - 401; Viruses - 8; Other Eukaryotes - 597 (source: NCBI BLink).  protein_id AT3G18230.1p  transcript_id AT3G18230.1  protein_id AT3G18230.1p  transcript_id AT3G18230.1  
At3g18235	chr3:006255153	0.0	C/6255153-6255301,6255026-6255062,6254857-6254930,6254672-6254729	AT3G18235.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT3G18235.1p  transcript_id AT3G18235.1  protein_id AT3G18235.1p  transcript_id AT3G18235.1  
At3g18240	chr3:006255810	0.0	W/6255810-6256050,6256275-6256676,6257003-6257417,6257494-6257695	AT3G18240.1  CDS  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21460.1); Has 238 Blast hits to 222 proteins in 74 species: Archae - 0; Bacteria - 50; Metazoa - 50; Fungi - 25; Plants - 30; Viruses - 2; Other Eukaryotes - 81 (source: NCBI BLink).  protein_id AT3G18240.1p  transcript_id AT3G18240.1  protein_id AT3G18240.1p  transcript_id AT3G18240.1  
At3g18240	chr3:006255810	0.0	W/6255810-6256050,6256275-6256676,6257003-6257417,6257494-6257695	AT3G18240.2  CDS  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21460.1); Has 238 Blast hits to 222 proteins in 74 species: Archae - 0; Bacteria - 50; Metazoa - 50; Fungi - 25; Plants - 30; Viruses - 2; Other Eukaryotes - 81 (source: NCBI BLink).  protein_id AT3G18240.2p  transcript_id AT3G18240.2  protein_id AT3G18240.2p  transcript_id AT3G18240.2  
At3g18250	chr3:006258177	0.0	C/6258177-6258407	AT3G18250.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage; Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 2; Plants - 12; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G18250.1p  transcript_id AT3G18250.1  protein_id AT3G18250.1p  transcript_id AT3G18250.1  
At3g18260	chr3:006261390	0.0	C/6261390-6261504,6261024-6261204,6260761-6260902,6260590-6260659,6260328-6260497	AT3G18260.1  CDS  go_component endoplasmic reticulum|GO:0005783||IEA  go_component endoplasmic reticulum|GO:0005783||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product reticulon family protein (RTNLB9)  note reticulon family protein (RTNLB9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: reticulon family protein (TAIR:AT3G10260.3); Has 778 Blast hits to 778 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 500; Fungi - 2; Plants - 267; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G18260.1p  transcript_id AT3G18260.1  protein_id AT3G18260.1p  transcript_id AT3G18260.1  
At3g18270	chr3:006262010	0.0	W/6262010-6262441,6262578-6262688,6262991-6263207,6263374-6263707,6263787-6263848,6263949-6264025	AT3G18270.1  CDS  gene_syn CYP77A5P, CYTOCHROME P450, FAMILY 77, SUBFAMILY A, POLYPEPTIDE 5 PSEUDOGENE  gene CYP77A5P  function a cytochrome P450 pseudogene. the second half of the gene overlaps perfectly with the other gene model.  go_component chloroplast|GO:0009507|18431481|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  product CYP77A5P; catalytic  note CYP77A5P; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mandelate racemase/muconate lactonizing enzyme, N-terminal (InterPro:IPR013341), Mandelate racemase/muconate lactonizing enzyme (InterPro:IPR001354), Mandelate racemase/muconate lactonizing enzyme, C-terminal (InterPro:IPR013342); Has 4839 Blast hits to 4839 proteins in 852 species: Archae - 100; Bacteria - 2958; Metazoa - 60; Fungi - 82; Plants - 19; Viruses - 0; Other Eukaryotes - 1620 (source: NCBI BLink).  protein_id AT3G18270.1p  transcript_id AT3G18270.1  protein_id AT3G18270.1p  transcript_id AT3G18270.1  
At3g18280	chr3:006267102	0.0	W/6267102-6267392	AT3G18280.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT1G48750.1); Has 212 Blast hits to 209 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 212; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G18280.1p  transcript_id AT3G18280.1  protein_id AT3G18280.1p  transcript_id AT3G18280.1  
At3g18282	chr3:006268466	0.0	C/6268466-6268586,6268201-6268355	AT3G18282.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT3G18282.1p  transcript_id AT3G18282.1  protein_id AT3G18282.1p  transcript_id AT3G18282.1  
At3g18290	chr3:006274308	0.0	W/6274308-6274637,6274932-6275141,6275268-6275462,6275537-6275898,6276270-6276498,6276640-6276808,6276904-6278136,6278300-6278471,6278823-6279041,6279153-6279290,6279397-6279631,6279719-6279778,6279881-6279952,6280034-6280174	AT3G18290.1  CDS  gene_syn EMB2454, embryo defective 2454  gene EMB2454  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product EMB2454 (embryo defective 2454); protein binding / zinc ion binding  note embryo defective 2454 (EMB2454); FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: embryonic development ending in seed dormancy; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CTCHY-type (InterPro:IPR017921), Zinc finger, CHY-type (InterPro:IPR008913), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Haemerythrin/HHE cation-binding motif (InterPro:IPR012312); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G74770.1); Has 1219 Blast hits to 1175 proteins in 139 species: Archae - 0; Bacteria - 6; Metazoa - 560; Fungi - 110; Plants - 380; Viruses - 2; Other Eukaryotes - 161 (source: NCBI BLink).  protein_id AT3G18290.1p  transcript_id AT3G18290.1  protein_id AT3G18290.1p  transcript_id AT3G18290.1  
At3g18291	chr3:006280645	0.0	C/6280645-6280773	AT3G18291.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G18291.1p  transcript_id AT3G18291.1  protein_id AT3G18291.1p  transcript_id AT3G18291.1  
At3g18295	chr3:006281268	0.0	W/6281268-6281840,6281923-6282000	AT3G18295.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48770.1); Has 138 Blast hits to 138 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G18295.1p  transcript_id AT3G18295.1  protein_id AT3G18295.1p  transcript_id AT3G18295.1  
At3g18300	chr3:006283396	0.0	W/6283396-6284220	AT3G18300.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, root; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48780.1); Has 38 Blast hits to 38 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G18300.1p  transcript_id AT3G18300.1  protein_id AT3G18300.1p  transcript_id AT3G18300.1  
At3g18310	chr3:006284523	0.0	C/6284523-6287144	AT3G18310.1  CDS  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; Has 12 Blast hits to 12 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G18310.1p  transcript_id AT3G18310.1  protein_id AT3G18310.1p  transcript_id AT3G18310.1  
At3g18320	chr3:006290129	0.0	C/6290129-6290383,6289227-6289871	AT3G18320.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G44120.1); Has 782 Blast hits to 477 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 782; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G18320.1p  transcript_id AT3G18320.1  protein_id AT3G18320.1p  transcript_id AT3G18320.1  
At3g18330	chr3:006291127	0.0	C/6291127-6292257	AT3G18330.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G07140.2); Has 580 Blast hits to 558 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 580; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G18330.1p  transcript_id AT3G18330.1  protein_id AT3G18330.1p  transcript_id AT3G18330.1  
At3g18340	chr3:006294018	0.0	W/6294018-6294251,6294283-6295134	AT3G18340.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein-related (TAIR:AT2G07120.1); Has 559 Blast hits to 543 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 559; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G18340.1p  transcript_id AT3G18340.1  protein_id AT3G18340.1p  transcript_id AT3G18340.1  
At3g18350	chr3:006297524	0.0	W/6297524-6297708,6297955-6298189,6298268-6298437,6298524-6298663,6298734-6298911,6299024-6299361,6299507-6299751,6299832-6300188,6300270-6300500	AT3G18350.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF639 (InterPro:IPR006927); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48840.1); Has 84 Blast hits to 81 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G18350.1p  transcript_id AT3G18350.1  protein_id AT3G18350.1p  transcript_id AT3G18350.1  
At3g18360	chr3:006300827	0.0	C/6300827-6301684	AT3G18360.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product VQ motif-containing protein  note VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT1G68450.1); Has 690 Blast hits to 681 proteins in 128 species: Archae - 2; Bacteria - 23; Metazoa - 336; Fungi - 74; Plants - 141; Viruses - 15; Other Eukaryotes - 99 (source: NCBI BLink).  protein_id AT3G18360.1p  transcript_id AT3G18360.1  protein_id AT3G18360.1p  transcript_id AT3G18360.1  
At3g18362	chr3:006302112	0.0	W/6302112-6303924	AT3G18362.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G18362.1  
At3g18370	chr3:006306362	0.0	W/6306362-6306556,6307012-6307086,6307180-6307287,6307399-6307431,6307527-6307616,6307701-6307826,6307907-6308050,6308139-6308549,6308629-6308763,6308867-6309085,6309176-6309436,6309516-6309644,6309735-6310256	AT3G18370.1  CDS  gene_syn ATSYTF, NTMC2T3, NTMC2TYPE3, SYTF  gene ATSYTF  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ATSYTF  note ATSYTF; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14590.2); Has 4136 Blast hits to 3001 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 2874; Fungi - 254; Plants - 695; Viruses - 0; Other Eukaryotes - 313 (source: NCBI BLink).  protein_id AT3G18370.1p  transcript_id AT3G18370.1  protein_id AT3G18370.1p  transcript_id AT3G18370.1  
At3g18380	chr3:006313128	0.0	C/6313128-6313181,6312690-6312775,6312548-6312593,6312247-6312448,6312006-6312081,6311838-6311889,6311611-6311754,6311407-6311526,6311002-6311268	AT3G18380.1  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700||IEA  go_function sequence-specific DNA binding|GO:0043565||IEA  product sequence-specific DNA binding / transcription factor  note sequence-specific DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15215.2); Has 44 Blast hits to 42 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G18380.1p  transcript_id AT3G18380.1  protein_id AT3G18380.1p  transcript_id AT3G18380.1  
At3g18380	chr3:006313128	0.0	C/6313128-6313181,6312690-6312775,6312548-6312593,6312247-6312448,6312006-6312081,6311838-6311889,6311611-6311754,6311407-6311526,6311002-6311271	AT3G18380.2  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700||IEA  go_function sequence-specific DNA binding|GO:0043565||IEA  product sequence-specific DNA binding / transcription factor  note sequence-specific DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15215.2); Has 44 Blast hits to 42 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G18380.2p  transcript_id AT3G18380.2  protein_id AT3G18380.2p  transcript_id AT3G18380.2  
At3g18390	chr3:006313572	0.0	W/6313572-6314492,6314897-6315365,6315455-6315585,6316071-6316415,6316540-6316696,6316832-6317124,6317221-6317280,6317414-6317584	AT3G18390.1  CDS  gene_syn EMB1865, embryo defective 1865  gene EMB1865  go_component chloroplast|GO:0009507|18431481|IDA  go_function RNA binding|GO:0003723||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product EMB1865 (embryo defective 1865); RNA binding  note embryo defective 1865 (EMB1865); FUNCTIONS IN: RNA binding; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA binding (TAIR:AT3G23070.1); Has 1149 Blast hits to 1011 proteins in 124 species: Archae - 5; Bacteria - 10; Metazoa - 293; Fungi - 119; Plants - 305; Viruses - 46; Other Eukaryotes - 371 (source: NCBI BLink).  protein_id AT3G18390.1p  transcript_id AT3G18390.1  protein_id AT3G18390.1p  transcript_id AT3G18390.1  
At3g18400	chr3:006320440	0.0	C/6320440-6320593,6319535-6319803,6318745-6319266	AT3G18400.1  CDS  gene_syn Arabidopsis NAC domain containing protein 58, anac058  gene anac058  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac058 (Arabidopsis NAC domain containing protein 58); transcription factor  note Arabidopsis NAC domain containing protein 58 (anac058); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC038 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 38); transcription factor (TAIR:AT2G24430.2); Has 1651 Blast hits to 1646 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1645; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G18400.1p  transcript_id AT3G18400.1  protein_id AT3G18400.1p  transcript_id AT3G18400.1  
At3g18410	chr3:006323203	0.0	W/6323203-6323491,6323730-6323761	AT3G18410.1  CDS  go_component mitochondrion|GO:0005739|12837548|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial membrane|GO:0031966|16407270|IDA  go_component respiratory chain complex I|GO:0045271|16407270|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process photorespiration|GO:0009853|16407270|TAS  go_function molecular_function|GO:0003674||ND  product NADH-ubiquinone oxidoreductase-related  note NADH-ubiquinone oxidoreductase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, respiratory chain complex I; BEST Arabidopsis thaliana protein match is: NADH-ubiquinone oxidoreductase-related (TAIR:AT1G49140.1); Has 96 Blast hits to 96 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 54; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G18410.1p  transcript_id AT3G18410.1  protein_id AT3G18410.1p  transcript_id AT3G18410.1  
At3g18410	chr3:006323203	0.0	W/6323203-6323491,6323730-6323761	AT3G18410.2  CDS  go_component mitochondrion|GO:0005739|12837548|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial membrane|GO:0031966|16407270|IDA  go_component respiratory chain complex I|GO:0045271|16407270|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process photorespiration|GO:0009853|16407270|TAS  go_function molecular_function|GO:0003674||ND  product NADH-ubiquinone oxidoreductase-related  note NADH-ubiquinone oxidoreductase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, respiratory chain complex I; BEST Arabidopsis thaliana protein match is: NADH-ubiquinone oxidoreductase-related (TAIR:AT1G49140.1); Has 96 Blast hits to 96 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 54; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G18410.2p  transcript_id AT3G18410.2  protein_id AT3G18410.2p  transcript_id AT3G18410.2  
At3g18420	chr3:006324771	0.0	C/6324771-6325721	AT3G18420.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product tetratricopeptide repeat (TPR)-containing protein  note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: chloroplast lumen common family protein (TAIR:AT2G37400.1); Has 2006 Blast hits to 1561 proteins in 415 species: Archae - 271; Bacteria - 982; Metazoa - 160; Fungi - 19; Plants - 64; Viruses - 0; Other Eukaryotes - 510 (source: NCBI BLink).  protein_id AT3G18420.1p  transcript_id AT3G18420.1  protein_id AT3G18420.1p  transcript_id AT3G18420.1  
At3g18430	chr3:006326180	0.0	W/6326180-6326249,6326336-6326460,6326551-6326647,6326745-6326854,6327242-6327316,6327426-6327476	AT3G18430.1  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function calcium ion binding|GO:0005509||IEA  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: CAM9 (CALMODULIN 9); calcium ion binding (TAIR:AT3G51920.1); Has 3772 Blast hits to 3771 proteins in 389 species: Archae - 0; Bacteria - 11; Metazoa - 2178; Fungi - 257; Plants - 701; Viruses - 0; Other Eukaryotes - 625 (source: NCBI BLink).  protein_id AT3G18430.1p  transcript_id AT3G18430.1  protein_id AT3G18430.1p  transcript_id AT3G18430.1  
At3g18440	chr3:006328181	0.0	W/6328181-6328580,6328884-6329021,6329111-6329380,6329459-6329595,6329693-6329839,6329948-6330652	AT3G18440.1  CDS  gene_syn AtALMT9, aluminum-activated malate transporter 9  gene AtALMT9  function Belongs to the aluminum-activated malate transporter family. Encodes a vacuolar malate channel. Expressed in all parts of plants. Almost exclusively expressed in mesophyll cells of leaves.  go_component plant-type vacuole membrane|GO:0009705|18005230|IDA  go_process malate transport|GO:0015743|18005230|IMP  go_function anion channel activity|GO:0005253|18005230|IDA  product AtALMT9 (aluminum-activated malate transporter 9); anion channel  note aluminum-activated malate transporter 9 (AtALMT9); FUNCTIONS IN: anion channel activity; INVOLVED IN: malate transport; LOCATED IN: plant-type vacuole membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0005 (InterPro:IPR006214); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G18420.1); Has 451 Blast hits to 448 proteins in 133 species: Archae - 0; Bacteria - 228; Metazoa - 0; Fungi - 11; Plants - 197; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT3G18440.1p  transcript_id AT3G18440.1  protein_id AT3G18440.1p  transcript_id AT3G18440.1  
At3g18450	chr3:006331923	0.0	C/6331923-6332118,6331748-6331819,6331447-6331656,6331229-6331305	AT3G18450.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18460.1); Has 357 Blast hits to 356 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 54; Fungi - 19; Plants - 283; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G18450.1p  transcript_id AT3G18450.1  protein_id AT3G18450.1p  transcript_id AT3G18450.1  
At3g18460	chr3:006333747	0.0	C/6333747-6333948,6333567-6333638,6333244-6333453,6333048-6333118	AT3G18460.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18450.1); Has 426 Blast hits to 425 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 74; Fungi - 35; Plants - 310; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT3G18460.1p  transcript_id AT3G18460.1  protein_id AT3G18460.1p  transcript_id AT3G18460.1  
At3g18470	chr3:006335644	0.0	C/6335644-6335698,6335462-6335533,6335165-6335377,6335000-6335061	AT3G18470.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G49030.1); Has 531 Blast hits to 530 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 76; Plants - 317; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT3G18470.1p  transcript_id AT3G18470.1  protein_id AT3G18470.1p  transcript_id AT3G18470.1  
At3g18480	chr3:006336924	0.0	W/6336924-6337026,6337427-6337537,6337657-6337835,6337918-6338067,6338291-6338379,6338467-6338576,6338696-6338790,6338888-6338943,6339043-6339208,6339326-6339418,6339551-6339679,6339803-6339922,6340043-6340123,6340552-6340659,6340762-6340905,6340995-6341096,6341187-6341266,6341354-6341446,6341536-6341596	AT3G18480.1  CDS  gene_syn Arabidopsis thaliana CCAAT-displacement protein alternatively spliced product, AtCASP  gene AtCASP  function This gene is predicted to encode a protein that functions as a Golgi apparatus structural component, known as a golgin in mammals and yeast. A fluorescently-tagged version of CASP co-localizes with Golgi markers, and this localization appears to require the C-terminal (565 689aa) portion of the protein. The protein is inserted into a membrane in a type II orientation.  go_process intra-Golgi vesicle-mediated transport|GO:0006891||IEA  go_component Golgi apparatus|GO:0005794|16028120|IDA  go_component integral to membrane|GO:0016021|16028120|IDA  product AtCASP (Arabidopsis thaliana CCAAT-displacement protein alternatively spliced product)  note Arabidopsis thaliana CCAAT-displacement protein alternatively spliced product (AtCASP); INVOLVED IN: intra-Golgi vesicle-mediated transport; LOCATED IN: integral to membrane, Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CASP, C-terminal (InterPro:IPR012955); BEST Arabidopsis thaliana protein match is: ZWI (ZWICHEL); calmodulin binding / microtubule motor (TAIR:AT5G65930.2); Has 86890 Blast hits to 48701 proteins in 1834 species: Archae - 778; Bacteria - 9420; Metazoa - 42802; Fungi - 6212; Plants - 2919; Viruses - 362; Other Eukaryotes - 24397 (source: NCBI BLink).  protein_id AT3G18480.1p  transcript_id AT3G18480.1  protein_id AT3G18480.1p  transcript_id AT3G18480.1  
At3g18485	chr3:006342566	0.0	C/6342566-6343178,6341918-6342465	AT3G18485.1  CDS  gene_syn IAA-LEUCINE RESISTANT 2, ILR2  gene ILR2  function Encodes a novel protein with no predicted membrane-spanning domains that is polymorphic among Arabidopsis accessions. The protein may modulate a metal transporter. Mutants are resistant to IAA-Leu, IAA-Phe, and the divalent metals cobalt and manganese but remain sensitive to free IAA; they are defective in lateral root formation and primary root elongation.  go_component cytosol|GO:0005829|12904214|TAS  go_process response to metal ion|GO:0010038|12904214|IMP  go_process lateral root morphogenesis|GO:0010102|12904214|IMP  go_process auxin conjugate metabolic process|GO:0010249|12904214|IMP  go_process root development|GO:0048364|12904214|IMP  go_function molecular_function|GO:0003674||ND  product ILR2 (IAA-LEUCINE RESISTANT 2)  note IAA-LEUCINE RESISTANT 2 (ILR2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lateral root morphogenesis, auxin conjugate metabolic process, root development, response to metal ion; LOCATED IN: cytosol; Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 14; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G18485.1p  transcript_id AT3G18485.1  protein_id AT3G18485.1p  transcript_id AT3G18485.1  
At3g18490	chr3:006349090	0.0	C/6349090-6350592	AT3G18490.1  CDS  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT1G25510.1); Has 2892 Blast hits to 2875 proteins in 278 species: Archae - 0; Bacteria - 2; Metazoa - 942; Fungi - 584; Plants - 1188; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).  protein_id AT3G18490.1p  transcript_id AT3G18490.1  protein_id AT3G18490.1p  transcript_id AT3G18490.1  
At3g18500	chr3:006352544	0.0	W/6352544-6352856,6353031-6353200,6353271-6353336,6353502-6353554,6353648-6353729,6353817-6353906,6354203-6354295,6354379-6354411,6354499-6354605,6354700-6354808,6354886-6354971,6355068-6355152,6355238-6355297	AT3G18500.2  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein (TAIR:AT1G73875.1); Has 964 Blast hits to 937 proteins in 164 species: Archae - 0; Bacteria - 37; Metazoa - 442; Fungi - 164; Plants - 170; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).  protein_id AT3G18500.2p  transcript_id AT3G18500.2  protein_id AT3G18500.2p  transcript_id AT3G18500.2  
At3g18500	chr3:006352544	0.0	W/6352544-6352856,6353031-6353200,6353502-6353554,6353648-6353729,6353817-6353906,6354203-6354295,6354379-6354411,6354499-6354605,6354700-6354808,6354886-6354971,6355068-6355152,6355238-6355297	AT3G18500.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein (TAIR:AT1G73875.1); Has 845 Blast hits to 820 proteins in 150 species: Archae - 0; Bacteria - 8; Metazoa - 432; Fungi - 137; Plants - 160; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT3G18500.1p  transcript_id AT3G18500.1  protein_id AT3G18500.1p  transcript_id AT3G18500.1  
At3g18510	chr3:006355711	0.0	W/6355711-6355818,6355889-6355984	AT3G18510.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 6 Blast hits to 6 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G18510.1p  transcript_id AT3G18510.1  protein_id AT3G18510.1p  transcript_id AT3G18510.1  
At3g18518	chr3:006360135	0.0	W/6360135-6360296	AT3G18518.1  CDS  gene_syn DEVIL 7, DVL7, ROTUNDIFOLIA LIKE 20, RTFL20  gene RTFL20  function Member of a family of small polypeptides found only in angiosperm lineages.Contains a conserved 29 amino acid domain (RTF or DVL domain).  go_component cellular_component|GO:0005575||ND  go_process shoot development|GO:0048367|14871303|ISS  go_function molecular_function|GO:0003674||ND  product RTFL20 (ROTUNDIFOLIA LIKE 20)  note ROTUNDIFOLIA LIKE 20 (RTFL20); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: shoot development; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); BEST Arabidopsis thaliana protein match is: RTFL19 (ROTUNDIFOLIA LIKE 19) (TAIR:AT3G02493.1); Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G18518.1p  transcript_id AT3G18518.1  protein_id AT3G18518.1p  transcript_id AT3G18518.1  
At3g18520	chr3:006361605	0.0	W/6361605-6361739,6361834-6362019,6362147-6362249,6362366-6362430,6362570-6362645,6362965-6363029,6363132-6363187,6363352-6363475,6363586-6363711,6363828-6363878,6363992-6364060,6364279-6364387,6364531-6364610,6364713-6364795,6364877-6364922,6365004-6365178,6365258-6365367	AT3G18520.1  CDS  gene_syn HDA15, histone deacetylase 15  gene HDA15  function Encodes a protein with similarity to histone deacetylases. Plants expressing RNAi directed against this gene show a moderate resistance to agrobacterium-mediated root transformation.  go_component intracellular|GO:0005622||IEA  go_process DNA mediated transformation|GO:0009294|17827277|IMP  go_process histone deacetylation|GO:0016575||ISS  go_function histone deacetylase activity|GO:0004407|12466527|ISS  go_function histone deacetylase activity|GO:0004407||ISS  product HDA15; histone deacetylase  note HDA15; FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: DNA mediated transformation, histone deacetylation; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: HDA05 (HISTONE DEACETYLASE 5); histone deacetylase (TAIR:AT5G61060.1); Has 7052 Blast hits to 6932 proteins in 853 species: Archae - 124; Bacteria - 2001; Metazoa - 1139; Fungi - 418; Plants - 355; Viruses - 0; Other Eukaryotes - 3015 (source: NCBI BLink).  protein_id AT3G18520.1p  transcript_id AT3G18520.1  protein_id AT3G18520.1p  transcript_id AT3G18520.1  
At3g18520	chr3:006361605	0.0	W/6361605-6361739,6361834-6362019,6362147-6362249,6362366-6362430,6362570-6362645,6362965-6363029,6363132-6363187,6363352-6363475,6363586-6363711,6363828-6363878,6363992-6364060,6364279-6364387,6364531-6364610,6364713-6364795,6364877-6364922,6365004-6365182,6365258-6365399	AT3G18520.2  CDS  gene_syn HDA15, histone deacetylase 15  gene HDA15  function Encodes a protein with similarity to histone deacetylases. Plants expressing RNAi directed against this gene show a moderate resistance to agrobacterium-mediated root transformation.  go_component intracellular|GO:0005622||IEA  go_process DNA mediated transformation|GO:0009294|17827277|IMP  go_process histone deacetylation|GO:0016575||ISS  go_function histone deacetylase activity|GO:0004407|12466527|ISS  go_function histone deacetylase activity|GO:0004407||ISS  product HDA15; histone deacetylase  note HDA15; FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: DNA mediated transformation, histone deacetylation; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: HDA05 (HISTONE DEACETYLASE 5); histone deacetylase (TAIR:AT5G61060.1); Has 7056 Blast hits to 6934 proteins in 853 species: Archae - 124; Bacteria - 2001; Metazoa - 1143; Fungi - 418; Plants - 355; Viruses - 0; Other Eukaryotes - 3015 (source: NCBI BLink).  protein_id AT3G18520.2p  transcript_id AT3G18520.2  protein_id AT3G18520.2p  transcript_id AT3G18520.2  
At3g18524	chr3:006372361	0.0	C/6372361-6372409,6372190-6372239,6371928-6371960,6370773-6371846,6370078-6370632,6369863-6369973,6369673-6369762,6369497-6369568,6369308-6369418,6369094-6369220,6368774-6368967,6368486-6368629,6368151-6368354	AT3G18524.1  CDS  gene_syn ATMSH2, MSH2, MUTS HOMOLOG 2  gene MSH2  function Encodes a DNA mismatch repair homolog of human MutS gene, MSH6. MSH2 is involved in maintaining genome stability and repressing recombination of mismatched heteroduplexes.There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2 has different binding specificity to different mismatches in combination with MSH3, MSH6, or MSH7.  go_component plasma membrane|GO:0005886|14506206|IDA  go_process mismatch repair|GO:0006298|12970498|IMP  go_process mismatch repair|GO:0006298||ISS  go_process negative regulation of reciprocal meiotic recombination|GO:0045128|16311517|IMP  go_function damaged DNA binding|GO:0003684|10852942|IDA  go_function damaged DNA binding|GO:0003684||ISS  go_function protein binding|GO:0005515|10852942|IDA  go_function ATP binding|GO:0005524||ISS  go_function mismatched DNA binding|GO:0030983|11550901|IDA  product MSH2 (MUTS HOMOLOG 2); ATP binding / damaged DNA binding / mismatched DNA binding / protein binding  note MUTS HOMOLOG 2 (MSH2); FUNCTIONS IN: damaged DNA binding, protein binding, mismatched DNA binding, ATP binding; INVOLVED IN: mismatch repair, negative regulation of reciprocal meiotic recombination; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, clamp (InterPro:IPR007861), DNA mismatch repair protein MutS, connector (InterPro:IPR007860), DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS-like, N-terminal (InterPro:IPR007695), DNA mismatch repair protein, MSH2 (InterPro:IPR011184); BEST Arabidopsis thaliana protein match is: MSH3 (Arabidopsis homolog of DNA mismatch repair protein MSH3); damaged DNA binding / mismatched DNA binding / protein binding (TAIR:AT4G25540.1); Has 8549 Blast hits to 8478 proteins in 1513 species: Archae - 70; Bacteria - 4756; Metazoa - 603; Fungi - 531; Plants - 240; Viruses - 3; Other Eukaryotes - 2346 (source: NCBI BLink).  protein_id AT3G18524.1p  transcript_id AT3G18524.1  protein_id AT3G18524.1p  transcript_id AT3G18524.1  
At3g18530	chr3:006374739	0.0	C/6374739-6375050,6374587-6374643,6374356-6374484,6374068-6374262,6373535-6373927	AT3G18530.1  CDS  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT3G01450.1); Has 132 Blast hits to 132 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 69; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G18530.1p  transcript_id AT3G18530.1  protein_id AT3G18530.1p  transcript_id AT3G18530.1  
At3g18535	chr3:006375677	0.0	C/6375677-6377220	AT3G18535.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT3G18540  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G18535.1  
At3g18540	chr3:006375809	0.0	W/6375809-6376055,6376612-6376698,6376795-6376851,6376941-6377263,6377375-6377467	AT3G18540.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; Has 750 Blast hits to 146 proteins in 55 species: Archae - 4; Bacteria - 112; Metazoa - 257; Fungi - 73; Plants - 21; Viruses - 41; Other Eukaryotes - 242 (source: NCBI BLink).  protein_id AT3G18540.1p  transcript_id AT3G18540.1  protein_id AT3G18540.1p  transcript_id AT3G18540.1  
At3g18550	chr3:006383769	0.0	W/6383769-6384441,6384546-6384641,6384735-6385186,6385524-6385604	AT3G18550.1  CDS  gene_syn ATTCP18, BRANCHED 1, BRC1, TCP18  gene BRC1  function Encodes a TCP transcription factor, closely related to teosinte branched1, arrests axillary bud development and prevents axillary bud outgrowth.  go_component nucleus|GO:0005634|17307924|IDA  go_process secondary shoot formation|GO:0010223|17307924|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product BRC1 (BRANCHED 1); transcription factor  note BRANCHED 1 (BRC1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: secondary shoot formation, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: axillary bud, axillary bud meristem; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), CYC/TB1, R domain (InterPro:IPR017888), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP12 (TCP DOMAIN PROTEIN 12); transcription factor (TAIR:AT1G68800.1); Has 1384 Blast hits to 1384 proteins in 325 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 1378; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G18550.1p  transcript_id AT3G18550.1  protein_id AT3G18550.1p  transcript_id AT3G18550.1  
At3g18550	chr3:006383769	0.0	W/6383769-6384441,6384558-6384641,6384735-6385186,6385524-6385604	AT3G18550.2  CDS  gene_syn ATTCP18, BRANCHED 1, BRC1, TCP18  gene BRC1  function Encodes a TCP transcription factor, closely related to teosinte branched1, arrests axillary bud development and prevents axillary bud outgrowth.  go_component nucleus|GO:0005634|17307924|IDA  go_process secondary shoot formation|GO:0010223|17307924|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product BRC1 (BRANCHED 1); transcription factor  note BRANCHED 1 (BRC1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: secondary shoot formation, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: axillary bud, axillary bud meristem; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), CYC/TB1, R domain (InterPro:IPR017888), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP12 (TCP DOMAIN PROTEIN 12); transcription factor (TAIR:AT1G68800.1); Has 1387 Blast hits to 1387 proteins in 325 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 1378; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G18550.2p  transcript_id AT3G18550.2  protein_id AT3G18550.2p  transcript_id AT3G18550.2  
At3g18560	chr3:006393984	0.0	W/6393984-6394571	AT3G18560.1  CDS  product unknown protein  note unknown protein; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G49000.1); Has 49 Blast hits to 49 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G18560.1p  transcript_id AT3G18560.1  protein_id AT3G18560.1p  transcript_id AT3G18560.1  
At3g18570	chr3:006396072	0.0	C/6396072-6396572	AT3G18570.1  CDS  go_component monolayer-surrounded lipid storage body|GO:0012511||IEA  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  go_process lipid storage|GO:0019915||ISS  go_function molecular_function|GO:0003674||ND  product glycine-rich protein / oleosin  note glycine-rich protein / oleosin; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lipid storage; LOCATED IN: monolayer-surrounded lipid storage body, integral to membrane, membrane; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136); BEST Arabidopsis thaliana protein match is: glycine-rich protein / oleosin (TAIR:AT1G48990.1); Has 235 Blast hits to 235 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 235; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G18570.1p  transcript_id AT3G18570.1  protein_id AT3G18570.1p  transcript_id AT3G18570.1  
At3g18580	chr3:006397823	0.0	C/6397823-6398068,6397412-6397638,6397109-6397209,6396940-6397019	AT3G18580.1  CDS  go_function single-stranded DNA binding|GO:0003697||IEA  go_process biological_process|GO:0008150||ND  go_function single-stranded DNA binding|GO:0003697||ISS  product single-strand-binding family protein  note single-strand-binding family protein; FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Primosome PriB/single-strand DNA-binding (InterPro:IPR000424); BEST Arabidopsis thaliana protein match is: MTSSB (mitochondrially targeted single-stranded DNA binding protein); single-stranded DNA binding (TAIR:AT4G11060.1); Has 2679 Blast hits to 2679 proteins in 626 species: Archae - 0; Bacteria - 1405; Metazoa - 88; Fungi - 0; Plants - 38; Viruses - 20; Other Eukaryotes - 1128 (source: NCBI BLink).  protein_id AT3G18580.1p  transcript_id AT3G18580.1  protein_id AT3G18580.1p  transcript_id AT3G18580.1  
At3g18590	chr3:006398670	0.0	W/6398670-6398856,6398958-6399337	AT3G18590.1  CDS  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function copper ion binding|GO:0005507||ISS  product plastocyanin-like domain-containing protein  note plastocyanin-like domain-containing protein; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to membrane; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: plastocyanin-like domain-containing protein (TAIR:AT1G48940.1); Has 744 Blast hits to 735 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 741; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G18590.1p  transcript_id AT3G18590.1  protein_id AT3G18590.1p  transcript_id AT3G18590.1  
At3g18600	chr3:006402666	0.0	C/6402666-6403007,6402385-6402570,6401960-6402145,6401511-6401594,6401170-6401211,6401026-6401094,6400650-6400949,6400512-6400550,6400317-6400421,6400178-6400246,6399972-6400097,6399724-6399882	AT3G18600.1  CDS  go_component nucleolus|GO:0005730|15496452|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD/DEAH box helicase, putative  note DEAD/DEAH box helicase, putative; FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (TAIR:AT5G65900.1); Has 29656 Blast hits to 28392 proteins in 1750 species: Archae - 457; Bacteria - 11767; Metazoa - 5675; Fungi - 3332; Plants - 1362; Viruses - 12; Other Eukaryotes - 7051 (source: NCBI BLink).  protein_id AT3G18600.1p  transcript_id AT3G18600.1  protein_id AT3G18600.1p  transcript_id AT3G18600.1  
At3g18610	chr3:006407790	0.0	C/6407790-6407822,6407659-6407698,6407352-6407509,6407065-6407226,6406894-6406983,6406721-6406810,6406548-6406637,6406401-6406472,6406221-6406313,6406038-6406130,6405801-6405941,6405671-6405721,6405449-6405534,6405245-6405362,6405072-6405154,6404901-6404982,6404403-6404799,6404270-6404301	AT3G18610.1  CDS  gene_syn ATRANGAP1, PARALLEL1-LIKE 1, PARLL1, RAN GTPASE-ACTIVATING PROTEIN 1  gene ATRANGAP1  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function nucleic acid binding|GO:0003676||ISS  product ATRANGAP1 (RAN GTPASE-ACTIVATING PROTEIN 1); nucleic acid binding / nucleotide binding  note RAN GTPASE-ACTIVATING PROTEIN 1 (ATRANGAP1); FUNCTIONS IN: nucleotide binding, nucleic acid binding; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: ATNUC-L1; nucleic acid binding / nucleotide binding (TAIR:AT1G48920.1); Has 184696 Blast hits to 87025 proteins in 2184 species: Archae - 365; Bacteria - 19098; Metazoa - 86288; Fungi - 27823; Plants - 9254; Viruses - 1168; Other Eukaryotes - 40700 (source: NCBI BLink).  protein_id AT3G18610.1p  transcript_id AT3G18610.1  protein_id AT3G18610.1p  transcript_id AT3G18610.1  
At3g18620	chr3:006408849	0.0	W/6408849-6408866,6409331-6409553,6409641-6409939,6410219-6410716	AT3G18620.1  CDS  go_function zinc ion binding|GO:0008270||IEA  product zinc finger (DHHC type) family protein  note zinc finger (DHHC type) family protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: zinc finger (DHHC type) family protein (TAIR:AT4G22750.2); Has 3847 Blast hits to 3845 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 1924; Fungi - 480; Plants - 393; Viruses - 0; Other Eukaryotes - 1050 (source: NCBI BLink).  protein_id AT3G18620.1p  transcript_id AT3G18620.1  protein_id AT3G18620.1p  transcript_id AT3G18620.1  
At3g18630	chr3:006412717	0.0	C/6412717-6413002,6412387-6412616,6412140-6412298,6412021-6412051,6411786-6411921,6411553-6411636,6411325-6411391	AT3G18630.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process base-excision repair|GO:0006284||IEA  go_function uracil DNA N-glycosylase activity|GO:0004844||IEA  go_process DNA repair|GO:0006281||ISS  go_function uracil DNA N-glycosylase activity|GO:0004844||ISS  product uracil DNA glycosylase family protein  note uracil DNA glycosylase family protein; FUNCTIONS IN: uracil DNA N-glycosylase activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Uracil-DNA glycosylase (InterPro:IPR002043), Uracil-DNA glycosylase-like (InterPro:IPR005122); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10550.1); Has 3474 Blast hits to 3474 proteins in 1242 species: Archae - 0; Bacteria - 2123; Metazoa - 111; Fungi - 87; Plants - 30; Viruses - 206; Other Eukaryotes - 917 (source: NCBI BLink).  protein_id AT3G18630.1p  transcript_id AT3G18630.1  protein_id AT3G18630.1p  transcript_id AT3G18630.1  
At3g18640	chr3:006415588	0.0	C/6415588-6415829,6413738-6415496,6413617-6413646	AT3G18640.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger protein-related  note zinc finger protein-related; FUNCTIONS IN: zinc ion binding, nucleic acid binding; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26850.2); Has 2001 Blast hits to 1797 proteins in 176 species: Archae - 1; Bacteria - 29; Metazoa - 857; Fungi - 186; Plants - 139; Viruses - 45; Other Eukaryotes - 744 (source: NCBI BLink).  protein_id AT3G18640.1p  transcript_id AT3G18640.1  protein_id AT3G18640.1p  transcript_id AT3G18640.1  
At3g18650	chr3:006417344	0.0	C/6417344-6418504	AT3G18650.1  CDS  gene_syn AGAMOUS-LIKE 103, agl103  gene agl103  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product agl103 (AGAMOUS-LIKE 103); transcription factor  note AGAMOUS-LIKE 103 (agl103); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL52; transcription factor (TAIR:AT4G11250.1); Has 2873 Blast hits to 2546 proteins in 395 species: Archae - 0; Bacteria - 4; Metazoa - 214; Fungi - 71; Plants - 1866; Viruses - 0; Other Eukaryotes - 718 (source: NCBI BLink).  protein_id AT3G18650.1p  transcript_id AT3G18650.1  protein_id AT3G18650.1p  transcript_id AT3G18650.1  
At3g18660	chr3:006421883	0.0	C/6421883-6421959,6421558-6421794,6420818-6421425,6419940-6420712,6419211-6419483	AT3G18660.1  CDS  gene_syn PGSIP1, PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1  gene PGSIP1  function Plants expressing an RNAi construct specifically targeting PGSIP1 was shown to have a dramatically reduced amount of starch.  go_component chloroplast|GO:0009507||IEA  go_process starch metabolic process|GO:0005982||IMP  go_process biosynthetic process|GO:0009058||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1); transferase, transferring glycosyl groups  note PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1 (PGSIP1); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process, starch metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: PGSIP2 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 2); transferase, transferring glycosyl groups (TAIR:AT1G77130.1); Has 915 Blast hits to 911 proteins in 201 species: Archae - 0; Bacteria - 67; Metazoa - 224; Fungi - 180; Plants - 307; Viruses - 72; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT3G18660.1p  transcript_id AT3G18660.1  protein_id AT3G18660.1p  transcript_id AT3G18660.1  
At3g18660	chr3:006421883	0.0	C/6421883-6421959,6421558-6421794,6420818-6421437,6419940-6420712,6419211-6419483	AT3G18660.2  CDS  gene_syn PGSIP1, PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1  gene PGSIP1  function Plants expressing an RNAi construct specifically targeting PGSIP1 was shown to have a dramatically reduced amount of starch.  go_component chloroplast|GO:0009507||IEA  go_process starch metabolic process|GO:0005982||IMP  go_process biosynthetic process|GO:0009058||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1); transferase, transferring glycosyl groups  note PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1 (PGSIP1); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process, starch metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: PGSIP2 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 2); transferase, transferring glycosyl groups (TAIR:AT1G77130.1); Has 915 Blast hits to 911 proteins in 201 species: Archae - 0; Bacteria - 67; Metazoa - 224; Fungi - 180; Plants - 307; Viruses - 72; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT3G18660.2p  transcript_id AT3G18660.2  protein_id AT3G18660.2p  transcript_id AT3G18660.2  
At3g18670	chr3:006425841	0.0	C/6425841-6426471,6425642-6425752,6424850-6425289,6424135-6424749	AT3G18670.1  CDS  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04700.1); Has 3672 Blast hits to 2244 proteins in 159 species: Archae - 3; Bacteria - 165; Metazoa - 2001; Fungi - 139; Plants - 628; Viruses - 2; Other Eukaryotes - 734 (source: NCBI BLink).  protein_id AT3G18670.1p  transcript_id AT3G18670.1  protein_id AT3G18670.1p  transcript_id AT3G18670.1  
At3g18680	chr3:006427533	0.0	W/6427533-6427747,6427965-6428106,6428201-6428254,6428619-6428710,6428822-6429048,6429132-6429308,6429408-6429520	AT3G18680.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process  de novo  pyrimidine base biosynthetic process|GO:0006207||IEA  go_process amino acid biosynthetic process|GO:0008652||IEA  go_function UMP kinase activity|GO:0033862||IEA  go_process pyrimidine nucleotide biosynthetic process|GO:0006221||ISS  go_function uridylate kinase activity|GO:0009041||ISS  product aspartate/glutamate/uridylate kinase family protein  note aspartate/glutamate/uridylate kinase family protein; FUNCTIONS IN: uridylate kinase activity, UMP kinase activity; INVOLVED IN: amino acid biosynthetic process,  de novo  pyrimidine base biosynthetic process, pyrimidine nucleotide biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aspartate/glutamate/uridylate kinase (InterPro:IPR001048), Uridylate kinase, bacteria (InterPro:IPR015963); BEST Arabidopsis thaliana protein match is: aspartate/glutamate/uridylate kinase family protein (TAIR:AT3G10030.1); Has 6984 Blast hits to 6984 proteins in 1560 species: Archae - 243; Bacteria - 4607; Metazoa - 0; Fungi - 27; Plants - 115; Viruses - 0; Other Eukaryotes - 1992 (source: NCBI BLink).  protein_id AT3G18680.1p  transcript_id AT3G18680.1  protein_id AT3G18680.1p  transcript_id AT3G18680.1  
At3g18690	chr3:006429755	0.0	C/6429755-6430423	AT3G18690.1  CDS  gene_syn MAP kinase substrate 1, MKS1  gene MKS1  function Encodes a nuclear-localized member of a plant specific gene family involved in mediating responses to pathogens. Interacts with WRKY transcriptional regulators.  go_component nucleus|GO:0005634|15990873|IDA  go_process defense response signaling pathway, resistance gene-dependent|GO:0009870|15990873|TAS  go_process defense response signaling pathway, resistance gene-dependent|GO:0009870|18650934|IMP  go_function protein binding|GO:0005515|15990873|IPI  product MKS1 (MAP kinase substrate 1); protein binding  note MAP kinase substrate 1 (MKS1); FUNCTIONS IN: protein binding; INVOLVED IN: defense response signaling pathway, resistance gene-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); Has 70 Blast hits to 70 proteins in 8 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 1; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G18690.1p  transcript_id AT3G18690.1  protein_id AT3G18690.1p  transcript_id AT3G18690.1  
At3g18700	chr3:006432765	0.0	C/6432765-6432905,6432625-6432678,6432412-6432499,6432255-6432320,6431722-6431897	AT3G18700.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: ACA.l (autoinhibited Ca2+/ATPase II); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism / calmodulin binding (TAIR:AT1G13210.1); Has 135 Blast hits to 135 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 71; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G18700.1p  transcript_id AT3G18700.1  protein_id AT3G18700.1p  transcript_id AT3G18700.1  
At3g18710	chr3:006434234	0.0	C/6434234-6435481	AT3G18710.1  CDS  gene_syn ARABIDOPSIS THALIANA PLANT U-BOX 29, ATPUB29, PLANT U-BOX 29, PUB29  gene PUB29  function Encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process response to chitin|GO:0010200|17722694|IEP  go_process protein ubiquitination|GO:0016567|14657406|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|14657406|IDA  product PUB29 (PLANT U-BOX 29); ubiquitin-protein ligase  note PLANT U-BOX 29 (PUB29); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: response to chitin, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein (TAIR:AT5G09800.1); Has 1141 Blast hits to 1131 proteins in 70 species: Archae - 0; Bacteria - 12; Metazoa - 125; Fungi - 0; Plants - 908; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT3G18710.1p  transcript_id AT3G18710.1  protein_id AT3G18710.1p  transcript_id AT3G18710.1  
At3g18715	chr3:006441067	0.0	W/6441067-6441348	AT3G18715.1  CDS  gene_syn IDL4, INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 4  gene IDL4  function Similar to Inflorescance deficient in abscission (IDA). Involved in floral organ abscission.  go_process floral organ abscission|GO:0010227|18660431|IMP  product IDL4 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 4)  note INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 4 (IDL4); INVOLVED IN: floral organ abscission; EXPRESSED IN: leaf abscission zone, vascular tissue, fruit abscission zone, guard cell, flower abscission zone; BEST Arabidopsis thaliana protein match is: IDL2 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 2) (TAIR:AT5G64667.1); Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G18715.1p  transcript_id AT3G18715.1  protein_id AT3G18715.1p  transcript_id AT3G18715.1  
At3g18720	chr3:006445660	0.0	C/6445660-6445751,6444433-6445483	AT3G18720.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G56470.1); Has 182 Blast hits to 182 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 182; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G18720.1p  transcript_id AT3G18720.1  protein_id AT3G18720.1p  transcript_id AT3G18720.1  
At3g18730	chr3:006452779	0.0	C/6452779-6453045,6451854-6452654,6451166-6451342,6450867-6450958,6450278-6450376,6449437-6450166,6449189-6449318,6448860-6448976,6448540-6448640,6448272-6448389,6448035-6448147,6447843-6447954,6447530-6447634,6447376-6447442,6447175-6447295,6446911-6447084,6446631-6446748,6446062-6446555	AT3G18730.1  CDS  gene_syn BRU1, BRUSHY1, MGO3, MGOUN3, TONSOKU, TSK  gene TSK  function Encodes a protein with an important role in cell division control and plant morphogenesis and may also play a role in genome maintenance. May be involved in mitosis through interaction with TSA1. In cells synchronized for cell division, TSA1 and TSK relocalize to ends of spindle microtubules that are ahead of separating chromatids during metaphase and anaphase of mitosis.  go_component membrane|GO:0016020|17432890|IDA  go_component nucleus|GO:0005634|15125773|IDA  go_process G2/M transition of mitotic cell cycle|GO:0000086|15746155|IMP  go_process meristem structural organization|GO:0009933|15125773|IMP  go_process regulation of meristem organization|GO:0009934|14966212|IMP  go_process cell division|GO:0051301|15125773|IMP  go_function protein binding|GO:0005515|15964904|IPI  product TSK (TONSOKU); protein binding  note TONSOKU (TSK); FUNCTIONS IN: protein binding; INVOLVED IN: regulation of meristem organization, G2/M transition of mitotic cell cycle, meristem structural organization, cell division; LOCATED IN: nucleus, membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: emb2004 (embryo defective 2004) (TAIR:AT1G10510.1); Has 5351 Blast hits to 3131 proteins in 244 species: Archae - 55; Bacteria - 1085; Metazoa - 3198; Fungi - 11; Plants - 160; Viruses - 0; Other Eukaryotes - 842 (source: NCBI BLink).  protein_id AT3G18730.1p  transcript_id AT3G18730.1  protein_id AT3G18730.1p  transcript_id AT3G18730.1  
At3g18740	chr3:006453437	0.0	W/6453437-6453563,6453659-6453870	AT3G18740.1  CDS  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 60S ribosomal protein L30 (RPL30C)  note 60S ribosomal protein L30 (RPL30C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038), Ribosomal protein L30e (InterPro:IPR000231); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L30 (RPL30B) (TAIR:AT1G77940.1); Has 768 Blast hits to 768 proteins in 281 species: Archae - 141; Bacteria - 3; Metazoa - 274; Fungi - 97; Plants - 93; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).  protein_id AT3G18740.1p  transcript_id AT3G18740.1  protein_id AT3G18740.1p  transcript_id AT3G18740.1  
At3g18750	chr3:006456744	0.0	C/6456744-6456830,6456506-6456543,6456087-6456314,6455778-6455998,6454947-6455327,6454307-6454854	AT3G18750.2  CDS  gene_syn ARABIDOPSIS THALIANA WITH NO K 6, ATWNK6, WITH NO K (=LYSINE) 6, WNK6, ZIK5  gene WNK6  function Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its transcription is under the control of circadian rhythms.  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468|12506983|TAS  go_function protein kinase activity|GO:0004672|12506983|TAS  go_function kinase activity|GO:0016301||ISS  product WNK6 (WITH NO K (=LYSINE) 6); kinase/ protein kinase  note WITH NO K (=LYSINE) 6 (WNK6); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: WNK7; kinase/ protein kinase (TAIR:AT1G49160.2); Has 56172 Blast hits to 55776 proteins in 2045 species: Archae - 15; Bacteria - 2914; Metazoa - 24969; Fungi - 5503; Plants - 11858; Viruses - 241; Other Eukaryotes - 10672 (source: NCBI BLink).  protein_id AT3G18750.2p  transcript_id AT3G18750.2  protein_id AT3G18750.2p  transcript_id AT3G18750.2  
At3g18750	chr3:006456744	0.0	C/6456744-6456830,6456506-6456543,6456087-6456314,6455778-6455998,6455464-6455621,6454947-6455370,6454307-6454854	AT3G18750.1  CDS  gene_syn ARABIDOPSIS THALIANA WITH NO K 6, ATWNK6, WITH NO K (=LYSINE) 6, WNK6, ZIK5  gene WNK6  function Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its transcription is under the control of circadian rhythms.  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468|12506983|TAS  go_function protein kinase activity|GO:0004672|12506983|TAS  go_function kinase activity|GO:0016301||ISS  product WNK6 (WITH NO K (=LYSINE) 6); kinase/ protein kinase  note WITH NO K (=LYSINE) 6 (WNK6); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: WNK7; kinase/ protein kinase (TAIR:AT1G49160.2); Has 80396 Blast hits to 79431 proteins in 2590 species: Archae - 34; Bacteria - 5864; Metazoa - 35256; Fungi - 7083; Plants - 16832; Viruses - 406; Other Eukaryotes - 14921 (source: NCBI BLink).  protein_id AT3G18750.1p  transcript_id AT3G18750.1  protein_id AT3G18750.1p  transcript_id AT3G18750.1  
At3g18760	chr3:006459376	0.0	C/6459376-6459558,6457930-6458151	AT3G18760.2  CDS  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein S6 family protein  note ribosomal protein S6 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EF1B/ribosomal protein S6 (InterPro:IPR014717), Ribosomal protein S6 (InterPro:IPR000529); Has 20 Blast hits to 19 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G18760.2p  transcript_id AT3G18760.2  protein_id AT3G18760.2p  transcript_id AT3G18760.2  
At3g18760	chr3:006459376	0.0	C/6459376-6459558,6457930-6458166	AT3G18760.1  CDS  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein S6 family protein  note ribosomal protein S6 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EF1B/ribosomal protein S6 (InterPro:IPR014717), Ribosomal protein S6 (InterPro:IPR000529); Has 21 Blast hits to 20 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G18760.1p  transcript_id AT3G18760.1  protein_id AT3G18760.1p  transcript_id AT3G18760.1  
At3g18770	chr3:006461182	0.0	C/6461182-6462510,6460913-6461094,6460026-6460392	AT3G18770.1  CDS  go_component chloroplast|GO:0009507||IEA  product unknown protein  note LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 13 (InterPro:IPR018731); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49590.2); Has 376 Blast hits to 291 proteins in 100 species: Archae - 0; Bacteria - 15; Metazoa - 70; Fungi - 108; Plants - 62; Viruses - 7; Other Eukaryotes - 114 (source: NCBI BLink).  protein_id AT3G18770.1p  transcript_id AT3G18770.1  protein_id AT3G18770.1p  transcript_id AT3G18770.1  
At3g18773	chr3:006466304	0.0	W/6466304-6466966	AT3G18773.1  CDS  gene_syn MVE11.14  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G49200.1); Has 5809 Blast hits to 5793 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 1924; Fungi - 357; Plants - 2612; Viruses - 46; Other Eukaryotes - 870 (source: NCBI BLink).  protein_id AT3G18773.1p  transcript_id AT3G18773.1  protein_id AT3G18773.1p  transcript_id AT3G18773.1  
At3g18777	chr3:006470219	0.0	W/6470219-6471389	AT3G18777.1  pseudogenic_transcript  pseudo  gene_syn MVE11.15  note pseudogene, similar to RING-H2 zinc finger protein, similar to putative RING zinc finger protein GB:AAF16660 from (Arabidopsis thaliana); blastp match of 47% identity and 3.3e-31 P-value to GP|17016985|gb|AAL33552.1|AF436851_1|AF436851 RING-H2 zinc finger protein {Cucumis melo}  
At3g18779	chr3:006474542	0.0	C/6474542-6474685	AT3G18779.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G18779.1p  transcript_id AT3G18779.1  protein_id AT3G18779.1p  transcript_id AT3G18779.1  
At3g18780	chr3:006475535	0.0	W/6475535-6475988,6476067-6476680,6476767-6476832	AT3G18780.2  CDS  gene_syn ACT2, ACTIN 2, DEFORMED ROOT HAIRS 1, DER1, ENHANCER OF LRX1 2, ENL2, LIGHT STRESS-REGULATED 2, LSR2  gene ACT2  function Encodes an actin that is constitutively expressed in vegetative structures but not pollen. ACT2 is involved in tip growth of root hairs.  go_component nucleus|GO:0005634|14617066|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytoplasm|GO:0005737|11809837|IDA  go_process response to high light intensity|GO:0009644|11683875|IEP  go_process response to cytokinin stimulus|GO:0009735|16212609|IEP  go_process root epidermal cell differentiation|GO:0010053|15863435|IMP  go_process response to red light|GO:0010114|17076805|IEP  go_process response to far red light|GO:0010218|17076805|IEP  go_process root hair elongation|GO:0048767|12481103|IMP  go_process root hair cell tip growth|GO:0048768|19304937|IMP  go_function structural constituent of cytoskeleton|GO:0005200|11809837|TAS  go_function structural constituent of cytoskeleton|GO:0005200||ISS  product ACT2 (ACTIN 2); structural constituent of cytoskeleton  note ACTIN 2 (ACT2); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: in 7 processes; LOCATED IN: nucleus, membrane, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: ACT8 (ACTIN 8); copper ion binding / structural constituent of cytoskeleton (TAIR:AT1G49240.1); Has 11072 Blast hits to 10782 proteins in 2291 species: Archae - 6; Bacteria - 3; Metazoa - 4916; Fungi - 2954; Plants - 1095; Viruses - 2; Other Eukaryotes - 2096 (source: NCBI BLink).  protein_id AT3G18780.2p  transcript_id AT3G18780.2  protein_id AT3G18780.2p  transcript_id AT3G18780.2  
At3g18780	chr3:006475535	0.0	W/6475535-6475988,6476067-6476728	AT3G18780.1  CDS  gene_syn ACT2, ACTIN 2, DEFORMED ROOT HAIRS 1, DER1, ENHANCER OF LRX1 2, ENL2, LIGHT STRESS-REGULATED 2, LSR2  gene ACT2  function Encodes an actin that is constitutively expressed in vegetative structures but not pollen. ACT2 is involved in tip growth of root hairs.  go_component nucleus|GO:0005634|14617066|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytoplasm|GO:0005737|11809837|IDA  go_process response to high light intensity|GO:0009644|11683875|IEP  go_process response to cytokinin stimulus|GO:0009735|16212609|IEP  go_process root epidermal cell differentiation|GO:0010053|15863435|IMP  go_process response to red light|GO:0010114|17076805|IEP  go_process response to far red light|GO:0010218|17076805|IEP  go_process root hair elongation|GO:0048767|12481103|IMP  go_process root hair cell tip growth|GO:0048768|19304937|IMP  go_function structural constituent of cytoskeleton|GO:0005200|11809837|TAS  go_function structural constituent of cytoskeleton|GO:0005200||ISS  product ACT2 (ACTIN 2); structural constituent of cytoskeleton  note ACTIN 2 (ACT2); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: in 7 processes; LOCATED IN: nucleus, membrane, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: ACT8 (ACTIN 8); copper ion binding / structural constituent of cytoskeleton (TAIR:AT1G49240.1); Has 10901 Blast hits to 10642 proteins in 2290 species: Archae - 6; Bacteria - 3; Metazoa - 4832; Fungi - 2917; Plants - 1090; Viruses - 2; Other Eukaryotes - 2051 (source: NCBI BLink).  protein_id AT3G18780.1p  transcript_id AT3G18780.1  protein_id AT3G18780.1p  transcript_id AT3G18780.1  
At3g18790	chr3:006477853	0.0	W/6477853-6478755	AT3G18790.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isy1-like splicing (InterPro:IPR009360); Has 1075 Blast hits to 879 proteins in 176 species: Archae - 8; Bacteria - 11; Metazoa - 379; Fungi - 177; Plants - 27; Viruses - 9; Other Eukaryotes - 464 (source: NCBI BLink).  protein_id AT3G18790.1p  transcript_id AT3G18790.1  protein_id AT3G18790.1p  transcript_id AT3G18790.1  
At3g18800	chr3:006479746	0.0	W/6479746-6480339	AT3G18800.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; Has 37 Blast hits to 37 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G18800.1p  transcript_id AT3G18800.1  protein_id AT3G18800.1p  transcript_id AT3G18800.1  
At3g18810	chr3:006482900	0.0	C/6482900-6483593,6481958-6482620,6481790-6481860,6481627-6481703,6481336-6481480,6481078-6481239,6480701-6480991	AT3G18810.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function ATP binding|GO:0005524||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G49270.1); Has 315218 Blast hits to 128974 proteins in 3824 species: Archae - 484; Bacteria - 28056; Metazoa - 57829; Fungi - 19474; Plants - 24039; Viruses - 2588; Other Eukaryotes - 182748 (source: NCBI BLink).  protein_id AT3G18810.1p  transcript_id AT3G18810.1  protein_id AT3G18810.1p  transcript_id AT3G18810.1  
At3g18815	chr3:006483940	0.0	C/6483940-6484013	AT3G18815.1  tRNA  gene_syn 60504.TRNA-THR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Thr (anticodon: AGT)  transcript_id AT3G18815.1  
At3g18820	chr3:006484266	0.0	W/6484266-6484318,6485011-6485137,6485293-6485439,6485530-6485610,6485704-6485849,6485939-6486005	AT3G18820.1  CDS  gene_syn ARABIDOPSIS RAB GTPASE HOMOLOG G3F, ATRAB7B, ATRABG3F, RAB71, RAB7B, RABG3F  gene ATRAB7B  go_component nucleus|GO:0005634|14617066|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F); GTP binding  note ARABIDOPSIS RAB GTPASE HOMOLOG G3F (ATRAB7B); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RABG3E (RAB GTPASE HOMOLOG G3E); GTP binding (TAIR:AT1G49300.2); Has 21200 Blast hits to 21171 proteins in 622 species: Archae - 28; Bacteria - 122; Metazoa - 11542; Fungi - 2814; Plants - 1791; Viruses - 19; Other Eukaryotes - 4884 (source: NCBI BLink).  protein_id AT3G18820.1p  transcript_id AT3G18820.1  protein_id AT3G18820.1p  transcript_id AT3G18820.1  
At3g18827	chr3:006488234	0.0	W/6488234-6488426	AT3G18827.1  miRNA  gene_syn MICRORNA868A, MIR868A  gene MIR868A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: CUUCUUAAGUGCUGAUAAUGC  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR868A (MICRORNA868A); miRNA  transcript_id AT3G18827.1  
At3g18830	chr3:006491053	0.0	C/6491053-6491209,6490592-6490938,6489974-6490273,6489000-6489815	AT3G18830.1  CDS  gene_syn ATPLT5, POLYOL TRANSPORTER 5  gene ATPLT5  function This gene encodes a plasma membrane-localized polyol/cyclitol/monosaccharide-H+-symporter. The AtPLT5 symporter is able to catalyze the energy-dependent membrane passage of a wide range of linear polyols (three to six carbon backbone), of cyclic polyols (<i>myo</i>-inositol), and of numerous monosaccharides, including pyranose ring-forming and furanose ring-forming hexoses and pentoses. This gene belongs to a monosaccharide transporter-like (MST-like) superfamily.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component plasma membrane|GO:0005886|15598803|IDA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351|15598803|IDA  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function galactose transmembrane transporter activity|GO:0005354|15598803|IDA  go_function glucose transmembrane transporter activity|GO:0005355|15598803|IDA  go_function myo-inositol transmembrane transporter activity|GO:0005365|15598803|IDA  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  go_function monosaccharide transmembrane transporter activity|GO:0015145|15525644|IDA  go_function D-xylose transmembrane transporter activity|GO:0015148|15598803|IDA  go_function glycerol transmembrane transporter activity|GO:0015168|15598803|IDA  go_function mannitol transmembrane transporter activity|GO:0015575|15598803|IDA  go_function sorbitol transmembrane transporter activity|GO:0015576|15598803|IDA  go_function D-ribose transmembrane transporter activity|GO:0015591|15598803|IDA  product ATPLT5 (POLYOL TRANSPORTER 5); D-ribose transmembrane transporter/ D-xylose transmembrane transporter/ carbohydrate transmembrane transporter/ galactose transmembrane transporter/ glucose transmembrane transporter/ glycerol transmembrane transporter/ mannitol transmembrane transporter/ monosaccharide transmembrane transporter/ myo-inositol transmembrane transporter/ sorbitol transmembrane transporter/ sugar:hydrogen symporter  note POLYOL TRANSPORTER 5 (ATPLT5); FUNCTIONS IN: in 11 functions; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: mannitol transporter, putative (TAIR:AT2G16120.1); Has 26364 Blast hits to 25884 proteins in 1425 species: Archae - 416; Bacteria - 12868; Metazoa - 4802; Fungi - 5126; Plants - 1531; Viruses - 2; Other Eukaryotes - 1619 (source: NCBI BLink).  protein_id AT3G18830.1p  transcript_id AT3G18830.1  protein_id AT3G18830.1p  transcript_id AT3G18830.1  
At3g18840	chr3:006496198	0.0	W/6496198-6498028,6498560-6498784,6498900-6498940	AT3G18840.2  CDS  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 15153 Blast hits to 4638 proteins in 103 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 22; Plants - 14884; Viruses - 0; Other Eukaryotes - 200 (source: NCBI BLink).  protein_id AT3G18840.2p  transcript_id AT3G18840.2  protein_id AT3G18840.2p  transcript_id AT3G18840.2  
At3g18845	chr3:006498513	0.0	C/6498513-6498816	AT3G18845.1  pseudogenic_transcript  pseudo  function Encodes a Protease inhibitor/seed storage/LTP family protein [pseudogene]  
At3g18850	chr3:006500287	0.0	C/6500287-6500840,6500076-6500206,6499529-6499971	AT3G18850.1  CDS  gene_syn LPAT5  gene LPAT5  go_process metabolic process|GO:0008152||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_process metabolic process|GO:0008152||ISS  go_function acyltransferase activity|GO:0008415||ISS  product LPAT5; acyltransferase  note LPAT5; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: LPAT4 (LYSOPHOSPHATIDYL ACYLTRANSFERASE 4); acyltransferase (TAIR:AT1G75020.2); Has 1293 Blast hits to 1289 proteins in 331 species: Archae - 0; Bacteria - 399; Metazoa - 468; Fungi - 121; Plants - 94; Viruses - 6; Other Eukaryotes - 205 (source: NCBI BLink).  protein_id AT3G18850.1p  transcript_id AT3G18850.1  protein_id AT3G18850.1p  transcript_id AT3G18850.1  
At3g18850	chr3:006500287	0.0	C/6500287-6500840,6500076-6500206,6499529-6499971	AT3G18850.2  CDS  gene_syn LPAT5  gene LPAT5  go_process metabolic process|GO:0008152||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_process metabolic process|GO:0008152||ISS  go_function acyltransferase activity|GO:0008415||ISS  product LPAT5; acyltransferase  note LPAT5; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: LPAT4 (LYSOPHOSPHATIDYL ACYLTRANSFERASE 4); acyltransferase (TAIR:AT1G75020.2); Has 1293 Blast hits to 1289 proteins in 331 species: Archae - 0; Bacteria - 399; Metazoa - 468; Fungi - 121; Plants - 94; Viruses - 6; Other Eukaryotes - 205 (source: NCBI BLink).  protein_id AT3G18850.2p  transcript_id AT3G18850.2  protein_id AT3G18850.2p  transcript_id AT3G18850.2  
At3g18850	chr3:006500287	0.0	C/6500287-6500840,6500076-6500206,6499529-6499971	AT3G18850.3  CDS  gene_syn LPAT5  gene LPAT5  go_process metabolic process|GO:0008152||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_process metabolic process|GO:0008152||ISS  go_function acyltransferase activity|GO:0008415||ISS  product LPAT5; acyltransferase  note LPAT5; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: LPAT4 (LYSOPHOSPHATIDYL ACYLTRANSFERASE 4); acyltransferase (TAIR:AT1G75020.2); Has 1293 Blast hits to 1289 proteins in 331 species: Archae - 0; Bacteria - 399; Metazoa - 468; Fungi - 121; Plants - 94; Viruses - 6; Other Eukaryotes - 205 (source: NCBI BLink).  protein_id AT3G18850.3p  transcript_id AT3G18850.3  protein_id AT3G18850.3p  transcript_id AT3G18850.3  
At3g18850	chr3:006500287	0.0	C/6500287-6500840,6500076-6500206,6499529-6499971	AT3G18850.4  CDS  gene_syn LPAT5  gene LPAT5  go_process metabolic process|GO:0008152||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_process metabolic process|GO:0008152||ISS  go_function acyltransferase activity|GO:0008415||ISS  product LPAT5; acyltransferase  note LPAT5; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: LPAT4 (LYSOPHOSPHATIDYL ACYLTRANSFERASE 4); acyltransferase (TAIR:AT1G75020.2); Has 1293 Blast hits to 1289 proteins in 331 species: Archae - 0; Bacteria - 399; Metazoa - 468; Fungi - 121; Plants - 94; Viruses - 6; Other Eukaryotes - 205 (source: NCBI BLink).  protein_id AT3G18850.4p  transcript_id AT3G18850.4  protein_id AT3G18850.4p  transcript_id AT3G18850.4  
At3g18850	chr3:006500783	0.0	C/6500783-6500840,6500287-6500713,6500076-6500206,6499529-6499971	AT3G18850.5  CDS  gene_syn LPAT5  gene LPAT5  go_process metabolic process|GO:0008152||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_process metabolic process|GO:0008152||ISS  go_function acyltransferase activity|GO:0008415||ISS  product LPAT5; acyltransferase  note LPAT5; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: LPAT4 (LYSOPHOSPHATIDYL ACYLTRANSFERASE 4); acyltransferase (TAIR:AT1G75020.2); Has 1179 Blast hits to 1175 proteins in 318 species: Archae - 0; Bacteria - 349; Metazoa - 468; Fungi - 121; Plants - 93; Viruses - 6; Other Eukaryotes - 142 (source: NCBI BLink).  protein_id AT3G18850.5p  transcript_id AT3G18850.5  protein_id AT3G18850.5p  transcript_id AT3G18850.5  
At3g18860	chr3:006501774	0.0	W/6501774-6501839,6502278-6502609,6502926-6503029,6503247-6503315,6503526-6503586,6503801-6503940,6504362-6504551,6504726-6504787,6504964-6505052,6505530-6505602,6505683-6505742,6505839-6505985,6506073-6506111,6506215-6506252,6506338-6506424,6506529-6506694,6507016-6507093,6507203-6507339,6507599-6507675,6507798-6507867,6508073-6508138,6508221-6508352	AT3G18860.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PFU (PLAA family ubiquitin binding) (InterPro:IPR015155), WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), PUL (InterPro:IPR013535); BEST Arabidopsis thaliana protein match is: RACK1B_AT (RECEPTOR FOR ACTIVATED C KINASE 1 B); nucleotide binding (TAIR:AT1G48630.1); Has 34215 Blast hits to 17060 proteins in 561 species: Archae - 40; Bacteria - 4260; Metazoa - 15055; Fungi - 7264; Plants - 3193; Viruses - 0; Other Eukaryotes - 4403 (source: NCBI BLink).  protein_id AT3G18860.1p  transcript_id AT3G18860.1  protein_id AT3G18860.1p  transcript_id AT3G18860.1  
At3g18860	chr3:006501774	0.0	W/6501774-6501839,6502278-6502609,6502926-6503029,6503247-6503315,6503526-6503586,6503801-6503940,6504362-6504551,6504726-6504787,6504964-6505052,6505530-6505602,6505683-6505742,6505839-6505985,6506073-6506111,6506215-6506252,6506338-6506424,6506529-6506694,6507016-6507093,6507203-6507339,6507599-6507675,6507798-6507871,6508077-6508138,6508221-6508352	AT3G18860.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PFU (PLAA family ubiquitin binding) (InterPro:IPR015155), WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), PUL (InterPro:IPR013535); BEST Arabidopsis thaliana protein match is: RACK1B_AT (RECEPTOR FOR ACTIVATED C KINASE 1 B); nucleotide binding (TAIR:AT1G48630.1); Has 34224 Blast hits to 17074 proteins in 561 species: Archae - 40; Bacteria - 4252; Metazoa - 15051; Fungi - 7279; Plants - 3196; Viruses - 0; Other Eukaryotes - 4406 (source: NCBI BLink).  protein_id AT3G18860.2p  transcript_id AT3G18860.2  protein_id AT3G18860.2p  transcript_id AT3G18860.2  
At3g18870	chr3:006508515	0.0	C/6508515-6509339	AT3G18870.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial transcription termination factor-related / mTERF-related  note mitochondrial transcription termination factor-related / mTERF-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, LP.02 two leaves visible; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: mitochondrial transcription termination factor-related / mTERF-related (TAIR:AT2G34620.1); Has 423 Blast hits to 339 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 0; Plants - 352; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT3G18870.1p  transcript_id AT3G18870.1  protein_id AT3G18870.1p  transcript_id AT3G18870.1  
At3g18880	chr3:006509588	0.0	W/6509588-6509749,6509914-6510069	AT3G18880.1  CDS  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component cytosolic small ribosomal subunit|GO:0022627||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein S17 family protein  note ribosomal protein S17 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome, intracellular; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S17 (InterPro:IPR000266); BEST Arabidopsis thaliana protein match is: emb1129 (embryo defective 1129); structural constituent of ribosome (TAIR:AT1G49400.1); Has 4907 Blast hits to 4907 proteins in 1461 species: Archae - 81; Bacteria - 2923; Metazoa - 31; Fungi - 32; Plants - 65; Viruses - 0; Other Eukaryotes - 1775 (source: NCBI BLink).  protein_id AT3G18880.1p  transcript_id AT3G18880.1  protein_id AT3G18880.1p  transcript_id AT3G18880.1  
At3g18890	chr3:006511169	0.0	W/6511169-6511346,6511691-6511808,6511902-6511974,6512057-6512102,6512183-6512359,6512444-6512525,6512636-6512708,6512808-6512918,6513021-6513173,6513281-6513414,6513542-6513745,6513869-6514132,6514233-6514364,6514459-6514581,6514672-6514729	AT3G18890.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  product binding / catalytic/ coenzyme binding  note binding / catalytic/ coenzyme binding; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: cellular metabolic process, metabolic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: flavin reductase-related (TAIR:AT2G34460.1); Has 22640 Blast hits to 13883 proteins in 1103 species: Archae - 75; Bacteria - 3686; Metazoa - 9197; Fungi - 3839; Plants - 1321; Viruses - 607; Other Eukaryotes - 3915 (source: NCBI BLink).  protein_id AT3G18890.1p  transcript_id AT3G18890.1  protein_id AT3G18890.1p  transcript_id AT3G18890.1  
At3g18895	chr3:006516218	0.0	W/6516218-6516290	AT3G18895.1  miRNA  gene_syn MICRORNA418, MIR418  gene MIR418  function Encodes a microRNA. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence:TAATGTGATGATGAACTGACC  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR418 (MICRORNA418); miRNA  transcript_id AT3G18895.1  
At3g18900	chr3:006517181	0.0	W/6517181-6517218,6517294-6517360,6517444-6517536,6517626-6517739,6517839-6518174,6518261-6518541,6518647-6518746,6518857-6518916,6519009-6519077,6519171-6519299,6519411-6519664,6519821-6520032,6520098-6520792	AT3G18900.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451), Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G18910.1); Has 812 Blast hits to 788 proteins in 57 species: Archae - 0; Bacteria - 47; Metazoa - 23; Fungi - 0; Plants - 717; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT3G18900.1p  transcript_id AT3G18900.1  protein_id AT3G18900.1p  transcript_id AT3G18900.1  
At3g18910	chr3:006521760	0.0	W/6521760-6522926	AT3G18910.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18900.1); Has 733 Blast hits to 711 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 731; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G18910.1p  transcript_id AT3G18910.1  protein_id AT3G18910.1p  transcript_id AT3G18910.1  
At3g18930	chr3:006524110	0.0	C/6524110-6525345	AT3G18930.1  CDS  gene_syn AT3G18920  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G40250.1); Has 5776 Blast hits to 5756 proteins in 221 species: Archae - 0; Bacteria - 0; Metazoa - 1856; Fungi - 419; Plants - 2604; Viruses - 59; Other Eukaryotes - 838 (source: NCBI BLink).  protein_id AT3G18930.1p  transcript_id AT3G18930.1  protein_id AT3G18930.1p  transcript_id AT3G18930.1  
At3g18930	chr3:006524110	0.0	C/6524110-6525345	AT3G18930.2  CDS  gene_syn AT3G18920  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G40250.1); Has 5776 Blast hits to 5756 proteins in 221 species: Archae - 0; Bacteria - 0; Metazoa - 1856; Fungi - 419; Plants - 2604; Viruses - 59; Other Eukaryotes - 838 (source: NCBI BLink).  protein_id AT3G18930.2p  transcript_id AT3G18930.2  protein_id AT3G18930.2p  transcript_id AT3G18930.2  
At3g18940	chr3:006528991	0.0	C/6528991-6529050,6528529-6528694,6528241-6528299,6527947-6528065,6527480-6527717,6527251-6527374,6527081-6527160	AT3G18940.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product clast3-related  note clast3-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP010044 (InterPro:IPR016562); Has 170 Blast hits to 170 proteins in 73 species: Archae - 1; Bacteria - 0; Metazoa - 98; Fungi - 37; Plants - 26; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT3G18940.1p  transcript_id AT3G18940.1  protein_id AT3G18940.1p  transcript_id AT3G18940.1  
At3g18950	chr3:006536900	0.0	W/6536900-6538321	AT3G18950.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT1G49450.1); Has 22480 Blast hits to 12151 proteins in 451 species: Archae - 14; Bacteria - 3107; Metazoa - 9780; Fungi - 4621; Plants - 1980; Viruses - 0; Other Eukaryotes - 2978 (source: NCBI BLink).  protein_id AT3G18950.1p  transcript_id AT3G18950.1  protein_id AT3G18950.1p  transcript_id AT3G18950.1  
At3g18952	chr3:006540631	0.0	W/6540631-6540667	AT3G18952.1  tRNA  gene_syn 60573.TRNA-TYR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT3G18952.1  
At3g18955	chr3:006541298	0.0	W/6541298-6542228	AT3G18955.1  pseudogenic_transcript  pseudo  gene_syn K13E13.6  note pseudogene, hypothetical protein  
At3g18957	chr3:006541749	0.0	C/6541749-6541807,6541535-6541628	AT3G18957.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT3G18957.1p  transcript_id AT3G18957.1  protein_id AT3G18957.1p  transcript_id AT3G18957.1  
At3g18960	chr3:006542618	0.0	W/6542618-6542749,6543003-6543429,6543498-6543568	AT3G18960.1  CDS  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcriptional factor B3 family protein  note transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT4G01580.1); Has 219 Blast hits to 200 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 219; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G18960.1p  transcript_id AT3G18960.1  protein_id AT3G18960.1p  transcript_id AT3G18960.1  
At3g18970	chr3:006543699	0.0	C/6543699-6545117	AT3G18970.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G59200.1); Has 10856 Blast hits to 4515 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 11; Plants - 10690; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT3G18970.1p  transcript_id AT3G18970.1  protein_id AT3G18970.1p  transcript_id AT3G18970.1  
At3g18980	chr3:006546514	0.0	W/6546514-6547761	AT3G18980.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G18910.1); Has 525 Blast hits to 500 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 525; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G18980.1p  transcript_id AT3G18980.1  protein_id AT3G18980.1p  transcript_id AT3G18980.1  
At3g18980	chr3:006546514	0.0	W/6546514-6547761	AT3G18980.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G18910.1); Has 525 Blast hits to 500 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 525; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G18980.2p  transcript_id AT3G18980.2  protein_id AT3G18980.2p  transcript_id AT3G18980.2  
At3g18990	chr3:006551509	0.0	C/6551509-6551568,6549880-6550327,6549715-6549783,6549416-6549615,6549077-6549325	AT3G18990.1  CDS  gene_syn REDUCED VERNALIZATION RESPONSE 1, REM39, REPRODUCTIVE MERISTEM 39, VRN1  gene VRN1  function Required for vernalization. Essential for the complete repression of FLC in vernalized plants. Required for the methylation of histone H3  go_component nucleoplasm|GO:0005654|16549797|IDA  go_process vernalization response|GO:0010048|8998499|IMP  go_function transcription repressor activity|GO:0016564|12114624|IDA  product VRN1 (REDUCED VERNALIZATION RESPONSE 1); transcription repressor  note REDUCED VERNALIZATION RESPONSE 1 (VRN1); FUNCTIONS IN: transcription repressor activity; INVOLVED IN: vernalization response; LOCATED IN: nucleoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: RTV1 (related to vernalization1 1); DNA binding / transcription factor (TAIR:AT1G49480.1); Has 311 Blast hits to 270 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 311; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G18990.1p  transcript_id AT3G18990.1  protein_id AT3G18990.1p  transcript_id AT3G18990.1  
At3g19000	chr3:006554512	0.0	C/6554512-6554987,6554004-6554364	AT3G19000.2  CDS  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT3G19010.2); Has 5676 Blast hits to 5655 proteins in 676 species: Archae - 0; Bacteria - 704; Metazoa - 103; Fungi - 558; Plants - 2990; Viruses - 0; Other Eukaryotes - 1321 (source: NCBI BLink).  protein_id AT3G19000.2p  transcript_id AT3G19000.2  protein_id AT3G19000.2p  transcript_id AT3G19000.2  
At3g19000	chr3:006554512	0.0	C/6554512-6554987,6554037-6554364,6553668-6553922	AT3G19000.1  CDS  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT3G19010.1); Has 6199 Blast hits to 6163 proteins in 694 species: Archae - 0; Bacteria - 740; Metazoa - 132; Fungi - 658; Plants - 3109; Viruses - 0; Other Eukaryotes - 1560 (source: NCBI BLink).  protein_id AT3G19000.1p  transcript_id AT3G19000.1  protein_id AT3G19000.1p  transcript_id AT3G19000.1  
At3g19002	chr3:006554531	0.0	W/6554531-6555657	AT3G19002.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT3G19000  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G19002.1  
At3g19010	chr3:006557402	0.0	C/6557402-6557862,6556567-6556999	AT3G19010.2  CDS  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process flavonoid biosynthetic process|GO:0009813||ISS  go_function flavonol synthase activity|GO:0045431||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: flavonol synthase activity, oxidoreductase activity, iron ion binding; INVOLVED IN: flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT3G19000.2); Has 5494 Blast hits to 5470 proteins in 639 species: Archae - 0; Bacteria - 636; Metazoa - 98; Fungi - 565; Plants - 2998; Viruses - 0; Other Eukaryotes - 1197 (source: NCBI BLink).  protein_id AT3G19010.2p  transcript_id AT3G19010.2  protein_id AT3G19010.2p  transcript_id AT3G19010.2  
At3g19010	chr3:006557402	0.0	C/6557402-6557862,6556672-6556999,6556306-6556566	AT3G19010.1  CDS  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process flavonoid biosynthetic process|GO:0009813||ISS  go_function flavonol synthase activity|GO:0045431||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: flavonol synthase activity, oxidoreductase activity, iron ion binding; INVOLVED IN: flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT3G19000.1); Has 6168 Blast hits to 6134 proteins in 688 species: Archae - 0; Bacteria - 727; Metazoa - 131; Fungi - 671; Plants - 3106; Viruses - 0; Other Eukaryotes - 1533 (source: NCBI BLink).  protein_id AT3G19010.1p  transcript_id AT3G19010.1  protein_id AT3G19010.1p  transcript_id AT3G19010.1  
At3g19020	chr3:006559174	0.0	C/6559174-6562044	AT3G19020.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function structural constituent of cell wall|GO:0005199|12644681|ISS  go_function protein binding|GO:0005515|12644681|ISS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein / extensin family protein  note leucine-rich repeat family protein / extensin family protein; FUNCTIONS IN: structural constituent of cell wall, protein binding; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / extensin family protein (TAIR:AT1G49490.1); Has 596389 Blast hits to 138954 proteins in 3098 species: Archae - 1591; Bacteria - 114539; Metazoa - 217331; Fungi - 72608; Plants - 81054; Viruses - 13366; Other Eukaryotes - 95900 (source: NCBI BLink).  protein_id AT3G19020.1p  transcript_id AT3G19020.1  protein_id AT3G19020.1p  transcript_id AT3G19020.1  
At3g19025	chr3:006562629	0.0	W/6562629-6563635	AT3G19025.1  pseudogenic_transcript  pseudo  note pseudogene, similar to ethylene-induced esterase, blastp match of 45% identity and 7.4e-14 P-value to GP|14279437|gb|AAK58599.1|AF269158_1|AF269158 ethylene-induced esterase {Citrus sinensis}  
At3g19030	chr3:006564117	0.0	C/6564117-6564299	AT3G19030.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process pyridoxine biosynthetic process|GO:0008615||IEA  go_process homoserine biosynthetic process|GO:0009090||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pyridoxine biosynthetic process, homoserine biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G49500.1); Has 18 Blast hits to 18 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G19030.1p  transcript_id AT3G19030.1  protein_id AT3G19030.1p  transcript_id AT3G19030.1  
At3g19035	chr3:006565949	0.0	W/6565949-6566053	AT3G19035.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G19035.1p  transcript_id AT3G19035.1  protein_id AT3G19035.1p  transcript_id AT3G19035.1  
At3g19040	chr3:006575042	0.0	C/6575042-6575282,6574699-6574790,6574434-6574608,6572930-6574040,6572576-6572778,6572220-6572457,6571758-6572094,6571348-6571539,6571115-6571204,6570769-6570969,6570261-6570467,6569631-6570114,6569373-6569542,6569151-6569249,6569005-6569061,6567836-6568924,6567157-6567531	AT3G19040.1  CDS  gene_syn HAF2, HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 2, TAF1, TAF1B, TBP-ASSOCIATED FACTOR 1, TBP-ASSOCIATED FACTOR 1B  gene HAF2  function Encodes a protein similar to TATA-binding protein-associated factor TAF1 (a.k.a. TAFII250) with histone acetyltransferase activity. It is required in integrating light signals to regulate gene expression and growth.  go_component membrane|GO:0016020|17432890|IDA  go_component transcription factor TFIID complex|GO:0005669|15525647|TAS  go_process response to light stimulus|GO:0009416|15525647|IEP  go_process histone acetylation|GO:0016573|15525647|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription cofactor activity|GO:0003712|15525647|TAS  go_function histone acetyltransferase activity|GO:0004402|12466527|ISS  product HAF2 (HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 2); DNA binding / histone acetyltransferase/ transcription cofactor  note HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 2 (HAF2); FUNCTIONS IN: histone acetyltransferase activity, transcription cofactor activity, DNA binding; INVOLVED IN: histone acetylation, response to light stimulus; LOCATED IN: membrane, transcription factor TFIID complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), Bromodomain, conserved site (InterPro:IPR018359), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: HAF01; DNA binding / histone acetyltransferase (TAIR:AT1G32750.1); Has 11540 Blast hits to 6463 proteins in 562 species: Archae - 0; Bacteria - 45; Metazoa - 5198; Fungi - 1357; Plants - 1497; Viruses - 138; Other Eukaryotes - 3305 (source: NCBI BLink).  protein_id AT3G19040.1p  transcript_id AT3G19040.1  protein_id AT3G19040.1p  transcript_id AT3G19040.1  
At3g19045	chr3:006576296	0.0	W/6576296-6577256	AT3G19045.1  mRNA_TE_gene  pseudo  gene_syn K13E13.16  note Transposable element gene, pseudogene, hypothetical protein  
At3g19050	chr3:006578047	0.0	W/6578047-6578631,6578815-6578970,6579054-6579137,6579499-6579618,6579710-6579823,6579904-6579996,6580070-6580230,6580298-6580372,6580463-6580550,6580636-6580694,6580784-6580847,6580938-6581003,6581089-6581274,6581371-6581475,6581560-6581795,6581887-6581956,6582046-6582111,6582221-6582265,6582345-6582424,6582530-6582611,6582728-6584308,6584396-6584734,6584968-6587253,6587349-6587456,6587539-6587660,6587734-6587821,6587911-6587985,6588064-6588297,6588391-6588489,6588695-6588769,6588861-6588919,6589024-6589135,6589225-6589335,6589422-6589658,6589761-6589883,6589975-6590106	AT3G19050.1  CDS  gene_syn PHRAGMOPLAST ORIENTING KINESIN 2, POK2  gene POK2  function PHRAGMOPLAST ORIENTING KINESIN 2 is one of the two Arabidopsis homologs isolated in yeast two-hybrid screen for interaction partners of maize gene TANGLED1 (TAN1). Based on sequence homology in their motor domains, POK1 and POK2 belong to the kinesin-12 class which also includes the well-characterized group of phragmoplast-associated kinesins AtPAKRPs. Both kinesins are composed of an N-terminal motor domain throughout the entire C terminus and putative cargo binding tail domains. The expression domains for POK2 constructs were broader than those for POK1; both are expressed in tissues enriched for dividing cells. The phenotype of pok1/pok2 double mutants strongly resembles that of maize tan1 mutants, characterized by misoriented mitotic cytoskeletal arrays and misplaced cell walls.  go_component microtubule associated complex|GO:0005875||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_process cytokinesis|GO:0000910|19011093|IGI  go_function microtubule motor activity|GO:0003777||ISS  product POK2 (PHRAGMOPLAST ORIENTING KINESIN 2); ATP binding / microtubule motor  note PHRAGMOPLAST ORIENTING KINESIN 2 (POK2); FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: cytokinesis; LOCATED IN: microtubule associated complex; EXPRESSED IN: root vascular system, primary root tip, lateral root primordium; CONTAINS InterPro DOMAIN/s: Kinesin-related (InterPro:IPR010544), Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: POK1 (PHRAGMOPLAST ORIENTING KINESIN 1); ATP binding / microtubule motor (TAIR:AT3G17360.1); Has 158313 Blast hits to 60677 proteins in 2030 species: Archae - 2079; Bacteria - 19188; Metazoa - 78653; Fungi - 12185; Plants - 6710; Viruses - 713; Other Eukaryotes - 38785 (source: NCBI BLink).  protein_id AT3G19050.1p  transcript_id AT3G19050.1  protein_id AT3G19050.1p  transcript_id AT3G19050.1  
At3g19055	chr3:006592316	0.0	W/6592316-6592407,6592496-6592620,6592702-6592774,6592891-6592942	AT3G19055.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G19055.1p  transcript_id AT3G19055.1  protein_id AT3G19055.1p  transcript_id AT3G19055.1  
At3g19070	chr3:006593773	0.0	W/6593773-6593941,6594022-6594765,6594850-6594977	AT3G19070.1  CDS  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product cell wall protein-related  note cell wall protein-related; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); Has 17236 Blast hits to 7921 proteins in 499 species: Archae - 8; Bacteria - 696; Metazoa - 5150; Fungi - 3255; Plants - 1847; Viruses - 322; Other Eukaryotes - 5958 (source: NCBI BLink).  protein_id AT3G19070.1p  transcript_id AT3G19070.1  protein_id AT3G19070.1p  transcript_id AT3G19070.1  
At3g19080	chr3:006596082	0.0	W/6596082-6596395,6596616-6596718,6596798-6596972,6597396-6597546,6597638-6597755,6597891-6598065,6598164-6598223,6598304-6598470,6598542-6598667	AT3G19080.1  CDS  go_process biological_process|GO:0008150||ND  product SWIB complex BAF60b domain-containing protein  note SWIB complex BAF60b domain-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 (InterPro:IPR003121), DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: SWIB complex BAF60b domain-containing protein (TAIR:AT1G49520.1); Has 4138 Blast hits to 2158 proteins in 243 species: Archae - 0; Bacteria - 435; Metazoa - 1547; Fungi - 451; Plants - 545; Viruses - 50; Other Eukaryotes - 1110 (source: NCBI BLink).  protein_id AT3G19080.1p  transcript_id AT3G19080.1  protein_id AT3G19080.1p  transcript_id AT3G19080.1  
At3g19085	chr3:006599589	0.0	W/6599589-6599975,6600068-6600211	AT3G19085.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G26030.3); Has 176 Blast hits to 173 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 176; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G19085.1p  transcript_id AT3G19085.1  protein_id AT3G19085.1p  transcript_id AT3G19085.1  
At3g19090	chr3:006601466	0.0	W/6601466-6601918,6602078-6602159,6602301-6602395,6602484-6602555,6602637-6602716,6602795-6602873,6602950-6602997,6603085-6603153,6603241-6603366,6603446-6603709	AT3G19090.1  CDS  go_component nucleus|GO:0005634||IEA  go_component ribonucleoprotein complex|GO:0030529||IEA  go_process RNA processing|GO:0006396||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function RNA binding|GO:0003723||ISS  product RNA-binding protein, putative  note RNA-binding protein, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: ribonucleoprotein complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Lupus La protein (InterPro:IPR002344), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: La domain-containing protein (TAIR:AT2G43970.1); Has 708 Blast hits to 708 proteins in 104 species: Archae - 0; Bacteria - 2; Metazoa - 476; Fungi - 48; Plants - 130; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT3G19090.1p  transcript_id AT3G19090.1  protein_id AT3G19090.1p  transcript_id AT3G19090.1  
At3g19100	chr3:006605681	0.0	W/6605681-6606226,6606903-6607033,6607171-6607212,6607319-6607427,6607530-6607905,6608013-6608125,6608233-6608340,6608420-6608482,6608577-6608744,6608837-6608980	AT3G19100.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function calcium-dependent protein serine/threonine phosphatase activity|GO:0004723||ISS  go_function calcium ion binding|GO:0005509||ISS  go_function kinase activity|GO:0016301||ISS  product calcium-dependent protein kinase, putative / CDPK, putative  note calcium-dependent protein kinase, putative / CDPK, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase, putative / CDPK, putative (TAIR:AT1G49580.1); Has 88782 Blast hits to 87368 proteins in 2426 species: Archae - 71; Bacteria - 8151; Metazoa - 38639; Fungi - 8417; Plants - 15332; Viruses - 469; Other Eukaryotes - 17703 (source: NCBI BLink).  protein_id AT3G19100.1p  transcript_id AT3G19100.1  protein_id AT3G19100.1p  transcript_id AT3G19100.1  
At3g19120	chr3:006609678	0.0	C/6609678-6611018	AT3G19120.1  CDS  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12010.1); Has 450 Blast hits to 448 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 288; Fungi - 49; Plants - 98; Viruses - 3; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT3G19120.1p  transcript_id AT3G19120.1  protein_id AT3G19120.1p  transcript_id AT3G19120.1  
At3g19130	chr3:006613425	0.0	C/6613425-6613823,6612531-6613014,6612272-6612354,6612058-6612188,6611851-6611944,6611398-6611514	AT3G19130.1  CDS  gene_syn ATRBP47B, RNA-binding protein 47B  gene ATRBP47B  go_function RNA binding|GO:0003723|11105760|ISS  product ATRBP47B (RNA-binding protein 47B); RNA binding  note RNA-binding protein 47B (ATRBP47B); FUNCTIONS IN: RNA binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a); RNA binding (TAIR:AT1G49600.1); Has 30014 Blast hits to 17093 proteins in 630 species: Archae - 14; Bacteria - 1495; Metazoa - 16452; Fungi - 3232; Plants - 4155; Viruses - 9; Other Eukaryotes - 4657 (source: NCBI BLink).  protein_id AT3G19130.1p  transcript_id AT3G19130.1  protein_id AT3G19130.1p  transcript_id AT3G19130.1  
At3g19140	chr3:006614910	0.0	C/6614910-6615335	AT3G19140.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G14320.1); Has 3300 Blast hits to 3287 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 1126; Fungi - 116; Plants - 1711; Viruses - 2; Other Eukaryotes - 345 (source: NCBI BLink).  protein_id AT3G19140.1p  transcript_id AT3G19140.1  protein_id AT3G19140.1p  transcript_id AT3G19140.1  
At3g19150	chr3:006617362	0.0	C/6617362-6617655,6617203-6617258,6616930-6617110	AT3G19150.2  CDS  gene_syn ICK4, KIP-RELATED PROTEIN 6, KRP6  gene KRP6  function Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. Binds to D type cyclins. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. KRP6 appears to be targeted for degradation by RHF1a and RHF2a to allow mitotic divisions during gametogenesis. In addition, KRP6 transcript levels rise prior to and drop following the meitotic divisions of gametogenesis. Elevated levels of KRP6 negatively affect plant development and fertility.  go_component nucleus|GO:0005634||IEA  go_process DNA endoreduplication|GO:0042023||IMP  go_process negative regulation of cyclin-dependent protein kinase activity|GO:0045736|16376885|IDA  go_process negative regulation of cyclin-dependent protein kinase activity|GO:0045736||TAS  go_function cyclin-dependent protein kinase inhibitor activity|GO:0004861||TAS  go_function cyclin binding|GO:0030332||IPI  product KRP6 (KIP-RELATED PROTEIN 6); cyclin binding / cyclin-dependent protein kinase inhibitor  note KIP-RELATED PROTEIN 6 (KRP6); FUNCTIONS IN: cyclin binding, cyclin-dependent protein kinase inhibitor activity; INVOLVED IN: negative regulation of cyclin-dependent protein kinase activity, DNA endoreduplication; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: C tetrad of megaspores, D pollen mother cell meiosis stage, B meiosis of megaspore mother cell; CONTAINS InterPro DOMAIN/s: Cyclin-dependent kinase inhibitor (InterPro:IPR003175); Has 1943 Blast hits to 271 proteins in 62 species: Archae - 0; Bacteria - 82; Metazoa - 585; Fungi - 170; Plants - 30; Viruses - 3; Other Eukaryotes - 1073 (source: NCBI BLink).  protein_id AT3G19150.2p  transcript_id AT3G19150.2  protein_id AT3G19150.2p  transcript_id AT3G19150.2  
At3g19150	chr3:006617362	0.0	C/6617362-6617655,6617203-6617258,6616934-6617110,6616628-6616691	AT3G19150.1  CDS  gene_syn ICK4, KIP-RELATED PROTEIN 6, KRP6  gene KRP6  function Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. Binds to D type cyclins. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. KRP6 appears to be targeted for degradation by RHF1a and RHF2a to allow mitotic divisions during gametogenesis. In addition, KRP6 transcript levels rise prior to and drop following the meitotic divisions of gametogenesis. Elevated levels of KRP6 negatively affect plant development and fertility.  go_component nucleus|GO:0005634||IEA  go_process DNA endoreduplication|GO:0042023||IMP  go_process negative regulation of cyclin-dependent protein kinase activity|GO:0045736|16376885|IDA  go_process negative regulation of cyclin-dependent protein kinase activity|GO:0045736||TAS  go_function cyclin-dependent protein kinase inhibitor activity|GO:0004861||TAS  go_function cyclin binding|GO:0030332||IPI  product KRP6 (KIP-RELATED PROTEIN 6); cyclin binding / cyclin-dependent protein kinase inhibitor  note KIP-RELATED PROTEIN 6 (KRP6); FUNCTIONS IN: cyclin binding, cyclin-dependent protein kinase inhibitor activity; INVOLVED IN: negative regulation of cyclin-dependent protein kinase activity, DNA endoreduplication; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: C tetrad of megaspores, D pollen mother cell meiosis stage, B meiosis of megaspore mother cell; CONTAINS InterPro DOMAIN/s: Cyclin-dependent kinase inhibitor, plant (InterPro:IPR016701), Cyclin-dependent kinase inhibitor (InterPro:IPR003175); BEST Arabidopsis thaliana protein match is: ICK5; cyclin binding / cyclin-dependent protein kinase inhibitor (TAIR:AT1G49620.1); Has 2041 Blast hits to 383 proteins in 82 species: Archae - 0; Bacteria - 84; Metazoa - 594; Fungi - 170; Plants - 131; Viruses - 3; Other Eukaryotes - 1059 (source: NCBI BLink).  protein_id AT3G19150.1p  transcript_id AT3G19150.1  protein_id AT3G19150.1p  transcript_id AT3G19150.1  
At3g19160	chr3:006622722	0.0	C/6622722-6623236,6621993-6622470	AT3G19160.1  CDS  gene_syn ATIPT8, ATP/ADP ISOPENTENYLTRANSFERASES, MVI11.16, PGA22  gene ATIPT8  function Encodes cytokinin synthase.  go_component chloroplast|GO:0009507||IEA  go_process cytokinin biosynthetic process|GO:0009691|11313355|TAS  go_process cytokinin biosynthetic process|GO:0009691|17062755|IGI  go_function adenylate dimethylallyltransferase activity|GO:0009824|11313355|ISS  go_function adenylate dimethylallyltransferase activity|GO:0009824||ISS  product ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES); adenylate dimethylallyltransferase  note ATP/ADP ISOPENTENYLTRANSFERASES (ATIPT8); FUNCTIONS IN: adenylate dimethylallyltransferase activity; INVOLVED IN: cytokinin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: flower, leaf, endosperm; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.12 twelve leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: tRNA isopentenyltransferase (InterPro:IPR002627); BEST Arabidopsis thaliana protein match is: ATIPT1 (isopentenyltransferase 1); adenylate dimethylallyltransferase (TAIR:AT1G68460.1); Has 4860 Blast hits to 4743 proteins in 1415 species: Archae - 0; Bacteria - 2616; Metazoa - 165; Fungi - 106; Plants - 185; Viruses - 0; Other Eukaryotes - 1788 (source: NCBI BLink).  protein_id AT3G19160.1p  transcript_id AT3G19160.1  protein_id AT3G19160.1p  transcript_id AT3G19160.1  
At3g19170	chr3:006631589	0.0	C/6631589-6631874,6631148-6631322,6630599-6630773,6630338-6630470,6630137-6630207,6629831-6629914,6629644-6629734,6629012-6629532,6628770-6628934,6628481-6628699,6628281-6628408,6627855-6628044,6627110-6627193,6626924-6627021,6626485-6626749,6626233-6626395,6625967-6626147,6625804-6625875,6625578-6625719	AT3G19170.1  CDS  gene_syn ATPREP1, ATZNMP, PRESEQUENCE PROTEASE 1  gene ATPREP1  function Zinc metalloprotease pitrilysin subfamily A. Signal peptide degrading enzyme targeted to mitochondria and chloroplasts. Expressed only in siliques and flowers  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component mitochondrion|GO:0005739|14617063|IDA  go_component chloroplast|GO:0009507|14617063|IDA  go_process proteolysis|GO:0006508||ISS  go_process protein maturation by peptide bond cleavage|GO:0051605|14617063|IDA  go_function metalloendopeptidase activity|GO:0004222|12138166|IDA  go_function metalloendopeptidase activity|GO:0004222||ISS  product ATPREP1 (PRESEQUENCE PROTEASE 1); metalloendopeptidase  note PRESEQUENCE PROTEASE 1 (ATPREP1); FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: response to cadmium ion, proteolysis, protein maturation by peptide bond cleavage; LOCATED IN: mitochondrion, apoplast, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M16, zinc-binding site (InterPro:IPR001431), Peptidase M16, C-terminal (InterPro:IPR007863), Peptidase M16C associated (InterPro:IPR013578), Peptidase M16, N-terminal (InterPro:IPR011765), Metalloenzyme, LuxS/M16 peptidase-like, metal-binding (InterPro:IPR011249), Peptidase M16, core (InterPro:IPR011237); BEST Arabidopsis thaliana protein match is: ATPREP2 (ARABIDOPSIS THALIANA PRESEQUENCE PROTEASE 2); catalytic/ metal ion binding / metalloendopeptidase/ metallopeptidase/ zinc ion binding (TAIR:AT1G49630.3); Has 2647 Blast hits to 2626 proteins in 706 species: Archae - 4; Bacteria - 1412; Metazoa - 214; Fungi - 180; Plants - 51; Viruses - 0; Other Eukaryotes - 786 (source: NCBI BLink).  protein_id AT3G19170.1p  transcript_id AT3G19170.1  protein_id AT3G19170.1p  transcript_id AT3G19170.1  
At3g19180	chr3:006632810	0.0	W/6632810-6633112,6633412-6633525,6633603-6633740,6633816-6633920,6634012-6634134,6634345-6634713,6634816-6634911,6635056-6635172,6635581-6635646,6635732-6636484,6636592-6636782,6636869-6636953	AT3G19180.1  CDS  gene_syn ARC6H  gene ARC6H  go_process plastid fission|GO:0043572|12897262|IMP  product ARC6H  note ARC6H; INVOLVED IN: plastid fission; BEST Arabidopsis thaliana protein match is: ARC6 (ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6); protein binding (TAIR:AT5G42480.1); Has 194 Blast hits to 155 proteins in 53 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT3G19180.1p  transcript_id AT3G19180.1  protein_id AT3G19180.1p  transcript_id AT3G19180.1  
At3g19180	chr3:006632810	0.0	W/6632810-6633112,6633412-6633525,6633603-6633740,6633816-6633920,6634012-6634134,6634345-6634713,6634816-6634911,6635056-6635172,6635581-6635646,6635732-6636547	AT3G19180.2  CDS  gene_syn ARC6H  gene ARC6H  go_process plastid fission|GO:0043572|12897262|IMP  product ARC6H  note ARC6H; INVOLVED IN: plastid fission; BEST Arabidopsis thaliana protein match is: ARC6 (ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6); protein binding (TAIR:AT5G42480.1); Has 164 Blast hits to 152 proteins in 51 species: Archae - 0; Bacteria - 83; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT3G19180.2p  transcript_id AT3G19180.2  protein_id AT3G19180.2p  transcript_id AT3G19180.2  
At3g19184	chr3:006637555	0.0	W/6637555-6637701,6637781-6637870,6638074-6638108,6638207-6638369,6638461-6638667,6638753-6638933,6639025-6639035	AT3G19184.1  CDS  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT5G42700.1); Has 167 Blast hits to 157 proteins in 25 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT3G19184.1p  transcript_id AT3G19184.1  protein_id AT3G19184.1p  transcript_id AT3G19184.1  
At3g19190	chr3:006639879	0.0	W/6639879-6640085,6640612-6641612,6641751-6641899,6642161-6642309,6642393-6645317,6645523-6645635,6646216-6646339,6646598-6646711,6646757-6646897,6646990-6647122,6647633-6647829,6647904-6648236	AT3G19190.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATG2, C-terminal (InterPro:IPR015412); Has 603 Blast hits to 514 proteins in 156 species: Archae - 0; Bacteria - 19; Metazoa - 326; Fungi - 168; Plants - 38; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT3G19190.1p  transcript_id AT3G19190.1  protein_id AT3G19190.1p  transcript_id AT3G19190.1  
At3g19200	chr3:006649611	0.0	C/6649611-6650006,6649478-6649513	AT3G19200.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34420.1); Has 21 Blast hits to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G19200.1p  transcript_id AT3G19200.1  protein_id AT3G19200.1p  transcript_id AT3G19200.1  
At3g19210	chr3:006658695	0.0	C/6658695-6658876,6658080-6658451,6657714-6657800,6657380-6657620,6657186-6657311,6657038-6657094,6656856-6656942,6656365-6656460,6656115-6656165,6655766-6655840,6655595-6655681,6655292-6655383,6655094-6655226,6654497-6654616,6654310-6654423,6654127-6654210,6653955-6654032,6653809-6653867,6653478-6653661,6653228-6653326,6652799-6653107	AT3G19210.1  CDS  gene_syn ARABIDOPSIS HOMOLOG OF RAD54, ATRAD54, CHR25  gene ATRAD54  function Encodes RAD54, a member of the SWI2/SNF2 family of DNA-stimulated ATPases. Functions in DNA repair via homologous recombination.  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process double-strand break repair via homologous recombination|GO:0000724|17227544|IMP  go_process DNA repair|GO:0006281||ISS  go_process response to gamma radiation|GO:0010332|17227544|IEP  go_function DNA binding|GO:0003677||ISS  go_function helicase activity|GO:0004386||ISS  go_function ATP binding|GO:0005524||ISS  product ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54); ATP binding / DNA binding / helicase/ nucleic acid binding  note ARABIDOPSIS HOMOLOG OF RAD54 (ATRAD54); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: DNA repair, response to gamma radiation, double-strand break repair via homologous recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: hydathode, style (sensu Poaceae), root, petiole, cultured cell; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: ATRX; ATP binding / DNA binding / helicase/ nucleic acid binding (TAIR:AT1G08600.1); Has 12264 Blast hits to 10303 proteins in 1134 species: Archae - 83; Bacteria - 3016; Metazoa - 3150; Fungi - 2658; Plants - 747; Viruses - 120; Other Eukaryotes - 2490 (source: NCBI BLink).  protein_id AT3G19210.1p  transcript_id AT3G19210.1  protein_id AT3G19210.1p  transcript_id AT3G19210.1  
At3g19220	chr3:006659207	0.0	W/6659207-6659572,6660099-6660225,6660418-6660488	AT3G19220.1  CDS  gene_syn CYO1, MVI11.22, SCO2, SHI-YO-U MEANS COTYLEDON IN JAPANESE, SNOWY COTYLEDON 2  gene SCO2  function Encodes a zinc finger protein that is similar to DnaJ and is involved in cotyledon chloroplast biogenesis. Cyo1 is localized to the thylakoid membrane and has protein disulfide isomerase activity in vivo.Cyo1 is more highly expressed in light grown seedlings. Loss of function mutants have albino cotyledons and abnormal plastids.  go_component chloroplast thylakoid membrane|GO:0009535|17921316|IDA  go_process chloroplast organization|GO:0009658|17921316|IMP  go_function protein disulfide isomerase activity|GO:0003756|17921316|IDA  product SCO2 (SNOWY COTYLEDON 2); protein disulfide isomerase  note SNOWY COTYLEDON 2 (SCO2); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: chloroplast organization; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 17 Blast hits to 17 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G19220.1p  transcript_id AT3G19220.1  protein_id AT3G19220.1p  transcript_id AT3G19220.1  
At3g19230	chr3:006663456	0.0	C/6663456-6663519,6662744-6663287,6662189-6662655,6661967-6662102,6661803-6661874,6661651-6661719,6661492-6661563,6661241-6661312,6661088-6661151	AT3G19230.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT3G05990.1); Has 35251 Blast hits to 8844 proteins in 484 species: Archae - 17; Bacteria - 1355; Metazoa - 1470; Fungi - 120; Plants - 30491; Viruses - 0; Other Eukaryotes - 1798 (source: NCBI BLink).  protein_id AT3G19230.1p  transcript_id AT3G19230.1  protein_id AT3G19230.1p  transcript_id AT3G19230.1  
At3g19235	chr3:006663708	0.0	W/6663708-6663780	AT3G19235.1  tRNA  gene_syn 60554.TRNA-ARG-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: CCT)  transcript_id AT3G19235.1  
At3g19240	chr3:006664383	0.0	W/6664383-6666038,6666133-6666423	AT3G19240.1  CDS  go_component cellular_component|GO:0005575||ND  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Vacuolar import and degradation, Vid27-related (InterPro:IPR013863); BEST Arabidopsis thaliana protein match is: dem protein-related / defective embryo and meristems protein-related (TAIR:AT4G33400.1); Has 206 Blast hits to 202 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 117; Plants - 38; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT3G19240.1p  transcript_id AT3G19240.1  protein_id AT3G19240.1p  transcript_id AT3G19240.1  
At3g19250	chr3:006667930	0.0	C/6667930-6668008,6666842-6667845	AT3G19250.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: polyadenylate-binding protein-related / PABP-related (TAIR:AT3G19330.1); Has 55 Blast hits to 55 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G19250.1p  transcript_id AT3G19250.1  protein_id AT3G19250.1p  transcript_id AT3G19250.1  
At3g19260	chr3:006671123	0.0	C/6671123-6671257,6670713-6670924,6670430-6670585,6669950-6670135,6669679-6669857,6669448-6669470	AT3G19260.1  CDS  gene_syn LAG ONE HOMOLOGUE 2, LAG1 HOMOLOG 2, LOH2, LONGEVITY ASSURANCE GENE1 HOMOLOG 2  gene LOH2  function LAG1 homolog . Loss of function mutant is sensitive to AAL-toxin. LOH2 is presumed to function in sphingolipid metabolism.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component endoplasmic reticulum|GO:0005783|18643979|IDA  go_component Golgi apparatus|GO:0005794|18643979|IDA  go_process response to molecule of fungal origin|GO:0002238|18725200|IMP  go_function molecular_function|GO:0003674||ND  product LOH2 (LAG ONE HOMOLOGUE 2)  note LAG ONE HOMOLOGUE 2 (LOH2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to molecule of fungal origin; LOCATED IN: endoplasmic reticulum, Golgi apparatus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longevity assurance, LAG1/LAC1 (InterPro:IPR016439), TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) (TAIR:AT1G13580.2); Has 957 Blast hits to 957 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 524; Fungi - 203; Plants - 100; Viruses - 2; Other Eukaryotes - 128 (source: NCBI BLink).  protein_id AT3G19260.1p  transcript_id AT3G19260.1  protein_id AT3G19260.1p  transcript_id AT3G19260.1  
At3g19270	chr3:006676207	0.0	C/6676207-6676400,6675804-6676125,6675561-6675710,6675233-6675481,6675062-6675151,6674888-6674966,6674655-6674761,6674423-6674541,6673885-6673981	AT3G19270.1  CDS  gene_syn CYP707A4, CYTOCHROME P450, FAMILY 707, SUBFAMILY A, POLYPEPTIDE 4  gene CYP707A4  function Encodes a protein with ABA 8 -hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family.  go_process response to desiccation|GO:0009269|15064374|IEP  go_process drought recovery|GO:0009819|15044947|IEP  go_function (+)-abscisic acid 8 -hydroxylase activity|GO:0010295|15064374|IDA  go_function oxygen binding|GO:0019825||ISS  product CYP707A4; (+)-abscisic acid 8 -hydroxylase/ oxygen binding  note CYP707A4; FUNCTIONS IN: oxygen binding, (+)-abscisic acid 8 -hydroxylase activity; INVOLVED IN: drought recovery, response to desiccation; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP707A1; (+)-abscisic acid 8 -hydroxylase/ oxygen binding (TAIR:AT4G19230.1); Has 24258 Blast hits to 24088 proteins in 1301 species: Archae - 51; Bacteria - 4244; Metazoa - 10015; Fungi - 3421; Plants - 4758; Viruses - 6; Other Eukaryotes - 1763 (source: NCBI BLink).  protein_id AT3G19270.1p  transcript_id AT3G19270.1  protein_id AT3G19270.1p  transcript_id AT3G19270.1  
At3g19274	chr3:006678719	0.0	W/6678719-6678871	AT3G19274.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G19274.1p  transcript_id AT3G19274.1  protein_id AT3G19274.1p  transcript_id AT3G19274.1  
At3g19280	chr3:006683445	0.0	C/6683445-6683801,6682999-6683159,6682660-6682901,6682463-6682567,6682048-6682204,6681742-6681969,6681409-6681664	AT3G19280.1  CDS  gene_syn ATFUT11, FUCOSYLTRANSFERASE 11, FUCT, FUCT1, FUCTA, FUT11  gene FUT11  function Encodes a protein with core & 945;1,3-fucosyltransferase activity.  go_component membrane|GO:0016020||IEA  go_process protein amino acid N-linked glycosylation|GO:0006487|12770780|IDA  go_function fucosyltransferase activity|GO:0008417|11420147|ISS  go_function fucosyltransferase activity|GO:0008417|11743104|ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase activity|GO:0017083|11420147|ISS  product FUT11 (FUCOSYLTRANSFERASE 11); 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase/ fucosyltransferase/ transferase, transferring glycosyl groups  note FUCOSYLTRANSFERASE 11 (FUT11); FUNCTIONS IN: 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase activity, transferase activity, transferring glycosyl groups, fucosyltransferase activity; INVOLVED IN: protein amino acid N-linked glycosylation; LOCATED IN: membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 10 (InterPro:IPR001503); BEST Arabidopsis thaliana protein match is: FUT12 (FUCOSYLTRANSFERASE 12); fucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT1G49710.1); Has 1323 Blast hits to 1319 proteins in 146 species: Archae - 2; Bacteria - 116; Metazoa - 909; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 211 (source: NCBI BLink).  protein_id AT3G19280.1p  transcript_id AT3G19280.1  protein_id AT3G19280.1p  transcript_id AT3G19280.1  
At3g19290	chr3:006687956	0.0	W/6687956-6689074,6689163-6689207,6689284-6689333,6689429-6689458,6689710-6689713	AT3G19290.2  CDS  gene_syn ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABF4, ABRE BINDING FACTOR 4, AREB2, MVI11.7  gene ABF4  function bZIP transcription factor with specificity for abscisic acid-responsive elements (ABRE). Mediate ABA-dependent stress responses.  go_component nucleus|GO:0005634|16299177|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|11019812|TAS  go_process response to stress|GO:0006950|10636868|TAS  go_process response to stress|GO:0006950|11884679|IMP  go_process response to water deprivation|GO:0009414|16463099|IEP  go_process response to salt stress|GO:0009651|16463099|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463099|IEP  go_process abscisic acid mediated signaling|GO:0009738|11884679|IMP  go_function DNA binding|GO:0003677|10636868|IPI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|10636868|ISS  go_function transcription factor activity|GO:0003700|10760247|TAS  go_function transcription factor activity|GO:0003700|11019812|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function protein binding|GO:0005515|16299177|IPI  go_function transcription activator activity|GO:0016563|10636868|IDA  go_function transcription activator activity|GO:0016563|10636868|TAS  go_function transcription activator activity|GO:0016563|11005831|IDA  product ABF4 (ABRE BINDING FACTOR 4); DNA binding / protein binding / transcription activator/ transcription factor  note ABRE BINDING FACTOR 4 (ABF4); FUNCTIONS IN: protein binding, transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827); BEST Arabidopsis thaliana protein match is: ABF1 (ABSCISIC ACID RESPONSIVE ELEMENT-BINDING FACTOR 1); DNA binding / protein binding / transcription activator/ transcription factor (TAIR:AT1G49720.1).  protein_id AT3G19290.2p  transcript_id AT3G19290.2  protein_id AT3G19290.2p  transcript_id AT3G19290.2  
At3g19290	chr3:006687956	0.0	W/6687956-6689074,6689262-6689333,6689429-6689458,6689710-6689784	AT3G19290.1  CDS  gene_syn ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABF4, ABRE BINDING FACTOR 4, AREB2, MVI11.7  gene ABF4  function bZIP transcription factor with specificity for abscisic acid-responsive elements (ABRE). Mediate ABA-dependent stress responses.  go_component nucleus|GO:0005634|16299177|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|11019812|TAS  go_process response to stress|GO:0006950|10636868|TAS  go_process response to stress|GO:0006950|11884679|IMP  go_process response to water deprivation|GO:0009414|16463099|IEP  go_process response to salt stress|GO:0009651|16463099|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463099|IEP  go_process abscisic acid mediated signaling|GO:0009738|11884679|IMP  go_function DNA binding|GO:0003677|10636868|IPI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|10636868|ISS  go_function transcription factor activity|GO:0003700|10760247|TAS  go_function transcription factor activity|GO:0003700|11019812|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function protein binding|GO:0005515|16299177|IPI  go_function transcription activator activity|GO:0016563|10636868|IDA  go_function transcription activator activity|GO:0016563|10636868|TAS  go_function transcription activator activity|GO:0016563|11005831|IDA  product ABF4 (ABRE BINDING FACTOR 4); DNA binding / protein binding / transcription activator/ transcription factor  note ABRE BINDING FACTOR 4 (ABF4); FUNCTIONS IN: protein binding, transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: ABF1 (ABSCISIC ACID RESPONSIVE ELEMENT-BINDING FACTOR 1); DNA binding / protein binding / transcription activator/ transcription factor (TAIR:AT1G49720.1); Has 4550 Blast hits to 3981 proteins in 217 species: Archae - 0; Bacteria - 8; Metazoa - 1539; Fungi - 344; Plants - 1049; Viruses - 0; Other Eukaryotes - 1610 (source: NCBI BLink).  protein_id AT3G19290.1p  transcript_id AT3G19290.1  protein_id AT3G19290.1p  transcript_id AT3G19290.1  
At3g19300	chr3:006693126	0.0	C/6693126-6693210,6692281-6692832,6691811-6692095,6691472-6691733,6691337-6691389,6691189-6691256,6691008-6691097,6690826-6690910,6690242-6690753	AT3G19300.1  CDS  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G49730.1); Has 87190 Blast hits to 86046 proteins in 3244 species: Archae - 60; Bacteria - 7900; Metazoa - 38567; Fungi - 6673; Plants - 18753; Viruses - 532; Other Eukaryotes - 14705 (source: NCBI BLink).  protein_id AT3G19300.1p  transcript_id AT3G19300.1  protein_id AT3G19300.1p  transcript_id AT3G19300.1  
At3g19310	chr3:006694260	0.0	W/6694260-6694343,6694482-6694604,6694698-6694835,6694957-6695055,6695140-6695443,6695532-6695755,6695831-6695917,6696011-6696193	AT3G19310.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_function phospholipase C activity|GO:0004629||IEA  go_function phosphoric diester hydrolase activity|GO:0008081||IEA  product phospholipase C/ phosphoric diester hydrolase  note phospholipase C/ phosphoric diester hydrolase; FUNCTIONS IN: phospholipase C activity, phosphoric diester hydrolase activity; INVOLVED IN: intracellular signaling cascade, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific , X region (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946); BEST Arabidopsis thaliana protein match is: phospholipase C/ phosphoric diester hydrolase (TAIR:AT1G49740.1); Has 273 Blast hits to 271 proteins in 54 species: Archae - 0; Bacteria - 35; Metazoa - 4; Fungi - 110; Plants - 78; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT3G19310.1p  transcript_id AT3G19310.1  protein_id AT3G19310.1p  transcript_id AT3G19310.1  
At3g19320	chr3:006697160	0.0	C/6697160-6698073,6696395-6696962	AT3G19320.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT1G49750.1); Has 99359 Blast hits to 37135 proteins in 1584 species: Archae - 178; Bacteria - 11577; Metazoa - 27460; Fungi - 6417; Plants - 38990; Viruses - 2136; Other Eukaryotes - 12601 (source: NCBI BLink).  protein_id AT3G19320.1p  transcript_id AT3G19320.1  protein_id AT3G19320.1p  transcript_id AT3G19320.1  
At3g19323	chr3:006698514	0.0	W/6698514-6699154	AT3G19323.1  pseudogenic_transcript  pseudo  function pseudogene of poly(A) binding protein  
At3g19330	chr3:006699423	0.0	W/6699423-6699501,6699623-6700222,6700319-6700673,6700757-6700772	AT3G19330.2  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product polyadenylate-binding protein-related / PABP-related  note polyadenylate-binding protein-related / PABP-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: shoot apex, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19250.1); Has 54 Blast hits to 54 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G19330.2p  transcript_id AT3G19330.2  protein_id AT3G19330.2p  transcript_id AT3G19330.2  
At3g19330	chr3:006699423	0.0	W/6699423-6699501,6699623-6700222,6700319-6700673,6700773-6700776	AT3G19330.3  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product polyadenylate-binding protein-related / PABP-related  note polyadenylate-binding protein-related / PABP-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: shoot apex, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19250.1); Has 54 Blast hits to 54 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G19330.3p  transcript_id AT3G19330.3  protein_id AT3G19330.3p  transcript_id AT3G19330.3  
At3g19330	chr3:006699423	0.0	W/6699423-6699501,6699623-6700673,6700754-6700772	AT3G19330.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product polyadenylate-binding protein-related / PABP-related  note polyadenylate-binding protein-related / PABP-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: shoot apex, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19250.1); Has 66 Blast hits to 66 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G19330.1p  transcript_id AT3G19330.1  protein_id AT3G19330.1p  transcript_id AT3G19330.1  
At3g19340	chr3:006703972	0.0	C/6703972-6704071,6703746-6703840,6703543-6703656,6703345-6703449,6703191-6703262,6702961-6703073,6702724-6702858,6702551-6702619,6702378-6702465,6702212-6702283,6702027-6702127,6701822-6701939,6701694-6701753,6701387-6701608	AT3G19340.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  product unknown protein  note LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: aminopeptidase (TAIR:AT5G13940.1); Has 143 Blast hits to 138 proteins in 46 species: Archae - 0; Bacteria - 59; Metazoa - 12; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT3G19340.1p  transcript_id AT3G19340.1  protein_id AT3G19340.1p  transcript_id AT3G19340.1  
At3g19350	chr3:006705526	0.0	W/6705526-6705624,6705717-6705929	AT3G19350.1  CDS  gene_syn MATERNALLY EXPRESSED PAB C-TERMINAL, MPC  gene MPC  function Encodes a the C-terminal domain of poly(A) binding proteins. MPC is imprinted such that only the maternal allele is expressed in the endosperm. MPC is silenced by the action of MET1 and its expression is promoted by DEM.  go_component cellular_component|GO:0005575||ND  go_process regulation of translation|GO:0006417|18796636|TAS  go_function poly(A) binding|GO:0008143|18796636|ISS  product MPC (MATERNALLY EXPRESSED PAB C-TERMINAL); poly(A) binding  note MATERNALLY EXPRESSED PAB C-TERMINAL (MPC); FUNCTIONS IN: poly(A) binding; INVOLVED IN: regulation of translation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Polyadenylate-binding protein/Hyperplastic disc protein (InterPro:IPR002004); BEST Arabidopsis thaliana protein match is: PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor (TAIR:AT1G49760.1); Has 700 Blast hits to 698 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 450; Fungi - 77; Plants - 97; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT3G19350.1p  transcript_id AT3G19350.1  protein_id AT3G19350.1p  transcript_id AT3G19350.1  
At3g19360	chr3:006707544	0.0	W/6707544-6708435,6708596-6708864	AT3G19360.1  CDS  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product zinc finger (CCCH-type) family protein  note zinc finger (CCCH-type) family protein; FUNCTIONS IN: transcription factor activity, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein (TAIR:AT1G32360.1); Has 867 Blast hits to 602 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 415; Fungi - 61; Plants - 211; Viruses - 0; Other Eukaryotes - 180 (source: NCBI BLink).  protein_id AT3G19360.1p  transcript_id AT3G19360.1  protein_id AT3G19360.1p  transcript_id AT3G19360.1  
At3g19370	chr3:006711046	0.0	W/6711046-6711132,6711308-6712947,6713033-6713069,6713144-6713494	AT3G19370.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  product unknown protein  note LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869, plant (InterPro:IPR008587); BEST Arabidopsis thaliana protein match is: transport protein-related (TAIR:AT2G23360.1); Has 35914 Blast hits to 20425 proteins in 933 species: Archae - 357; Bacteria - 2527; Metazoa - 19254; Fungi - 2459; Plants - 1272; Viruses - 95; Other Eukaryotes - 9950 (source: NCBI BLink).  protein_id AT3G19370.1p  transcript_id AT3G19370.1  protein_id AT3G19370.1p  transcript_id AT3G19370.1  
At3g19370	chr3:006711046	0.0	W/6711046-6711132,6711308-6712947,6713033-6713069,6713144-6713494	AT3G19370.2  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  product unknown protein  note LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869, plant (InterPro:IPR008587); BEST Arabidopsis thaliana protein match is: transport protein-related (TAIR:AT2G23360.1); Has 35914 Blast hits to 20425 proteins in 933 species: Archae - 357; Bacteria - 2527; Metazoa - 19254; Fungi - 2459; Plants - 1272; Viruses - 95; Other Eukaryotes - 9950 (source: NCBI BLink).  protein_id AT3G19370.2p  transcript_id AT3G19370.2  protein_id AT3G19370.2p  transcript_id AT3G19370.2  
At3g19370	chr3:006711046	0.0	W/6711046-6711132,6711308-6712947,6713033-6713069,6713144-6713494	AT3G19370.3  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  product unknown protein  note LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869, plant (InterPro:IPR008587); BEST Arabidopsis thaliana protein match is: transport protein-related (TAIR:AT2G23360.1); Has 35914 Blast hits to 20425 proteins in 933 species: Archae - 357; Bacteria - 2527; Metazoa - 19254; Fungi - 2459; Plants - 1272; Viruses - 95; Other Eukaryotes - 9950 (source: NCBI BLink).  protein_id AT3G19370.3p  transcript_id AT3G19370.3  protein_id AT3G19370.3p  transcript_id AT3G19370.3  
At3g19380	chr3:006714602	0.0	C/6714602-6715867	AT3G19380.1  CDS  gene_syn PLANT U-BOX 25, PUB25  gene PUB25  go_component ubiquitin ligase complex|GO:0000151||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  go_process response to chitin|GO:0010200|17722694|IEP  product PUB25 (PLANT U-BOX 25); binding / ubiquitin-protein ligase  note PLANT U-BOX 25 (PUB25); FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: PUB26 (PLANT U-BOX 26); binding / ubiquitin-protein ligase (TAIR:AT1G49780.1); Has 1446 Blast hits to 1412 proteins in 94 species: Archae - 0; Bacteria - 16; Metazoa - 157; Fungi - 19; Plants - 1088; Viruses - 3; Other Eukaryotes - 163 (source: NCBI BLink).  protein_id AT3G19380.1p  transcript_id AT3G19380.1  protein_id AT3G19380.1p  transcript_id AT3G19380.1  
At3g19390	chr3:006723024	0.0	W/6723024-6723474,6723578-6723816,6723924-6724064,6724153-6724587,6724676-6724768	AT3G19390.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_function cysteine-type peptidase activity|GO:0008234||ISS  product cysteine proteinase, putative / thiol protease, putative  note cysteine proteinase, putative / thiol protease, putative; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Granulin (InterPro:IPR000118), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: cysteine proteinase, putative / thiol protease, putative (TAIR:AT5G43060.1); Has 7156 Blast hits to 6383 proteins in 610 species: Archae - 31; Bacteria - 127; Metazoa - 3743; Fungi - 6; Plants - 1232; Viruses - 124; Other Eukaryotes - 1893 (source: NCBI BLink).  protein_id AT3G19390.1p  transcript_id AT3G19390.1  protein_id AT3G19390.1p  transcript_id AT3G19390.1  
At3g19400	chr3:006725510	0.0	W/6725510-6725963,6726050-6726291,6726381-6726524,6726630-6726878	AT3G19400.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product cysteine proteinase, putative  note cysteine proteinase, putative; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: cysteine proteinase, putative / thiol protease, putative (TAIR:AT3G19390.1); Has 6158 Blast hits to 6100 proteins in 581 species: Archae - 27; Bacteria - 99; Metazoa - 2837; Fungi - 4; Plants - 1227; Viruses - 120; Other Eukaryotes - 1844 (source: NCBI BLink).  protein_id AT3G19400.1p  transcript_id AT3G19400.1  protein_id AT3G19400.1p  transcript_id AT3G19400.1  
At3g19400	chr3:006725510	0.0	W/6725510-6725963,6726050-6726291,6726381-6726557	AT3G19400.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product cysteine proteinase, putative  note cysteine proteinase, putative; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: cysteine proteinase, putative / thiol protease, putative (TAIR:AT3G19390.1); Has 5223 Blast hits to 5202 proteins in 539 species: Archae - 13; Bacteria - 42; Metazoa - 2499; Fungi - 0; Plants - 1125; Viruses - 111; Other Eukaryotes - 1433 (source: NCBI BLink).  protein_id AT3G19400.2p  transcript_id AT3G19400.2  protein_id AT3G19400.2p  transcript_id AT3G19400.2  
At3g19410	chr3:006729585	0.0	W/6729585-6730706	AT3G19410.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G18910.1); Has 597 Blast hits to 575 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 597; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G19410.1p  transcript_id AT3G19410.1  protein_id AT3G19410.1p  transcript_id AT3G19410.1  
At3g19420	chr3:006731824	0.0	W/6731824-6732369,6732456-6732512,6733025-6733090,6733587-6733763,6733838-6733924,6734015-6734079,6734152-6734228,6734313-6734359,6734433-6734563,6734658-6734727,6734842-6735354	AT3G19420.1  CDS  gene_syn ARABIDOPSIS THALIANA PTEN 2, ATPEN2  gene ATPEN2  go_process dephosphorylation|GO:0016311||IEA  go_function protein tyrosine phosphatase activity|GO:0004725||IEA  go_function phosphatase activity|GO:0016791||IEA  product ATPEN2 (ARABIDOPSIS THALIANA PTEN 2); phosphatase/ protein tyrosine phosphatase  note ARABIDOPSIS THALIANA PTEN 2 (ATPEN2); FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity; INVOLVED IN: dephosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Phosphatase tensin type (InterPro:IPR014019), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Tensin phosphatase, C2 domain (InterPro:IPR014020); BEST Arabidopsis thaliana protein match is: ATPEN3 (ARABIDOPSIS THALIANA PTEN 3); phosphatase/ protein tyrosine phosphatase/ protein tyrosine/serine/threonine phosphatase (TAIR:AT3G50110.1); Has 4513 Blast hits to 1446 proteins in 192 species: Archae - 0; Bacteria - 143; Metazoa - 819; Fungi - 446; Plants - 71; Viruses - 4; Other Eukaryotes - 3030 (source: NCBI BLink).  protein_id AT3G19420.1p  transcript_id AT3G19420.1  protein_id AT3G19420.1p  transcript_id AT3G19420.1  
At3g19430	chr3:006737436	0.0	C/6737436-6738330,6736948-6737342,6736382-6736771	AT3G19430.1  CDS  go_function structural constituent of cell wall|GO:0005199||IEA  product late embryogenesis abundant protein-related / LEA protein-related  note late embryogenesis abundant protein-related / LEA protein-related; FUNCTIONS IN: structural constituent of cell wall; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pistil-specific extensin-like protein (InterPro:IPR003882), Root cap (InterPro:IPR009646); BEST Arabidopsis thaliana protein match is: late embryogenesis abundant protein-related / LEA protein-related (TAIR:AT5G60520.1); Has 336529 Blast hits to 95408 proteins in 2596 species: Archae - 1415; Bacteria - 71244; Metazoa - 133949; Fungi - 43621; Plants - 30019; Viruses - 9453; Other Eukaryotes - 46828 (source: NCBI BLink).  protein_id AT3G19430.1p  transcript_id AT3G19430.1  protein_id AT3G19430.1p  transcript_id AT3G19430.1  
At3g19440	chr3:006740778	0.0	W/6740778-6741125,6741194-6741256,6741352-6741504,6741604-6741651,6741738-6741818,6741950-6742063,6742164-6742265,6742427-6742538,6742626-6742672,6742767-6743132	AT3G19440.1  CDS  go_process pseudouridine synthesis|GO:0001522||IEA  go_function pseudouridine synthase activity|GO:0009982|18599582|TAS  go_function pseudouridine synthase activity|GO:0009982||ISS  product pseudouridine synthase family protein  note pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase (InterPro:IPR006145); BEST Arabidopsis thaliana protein match is: pseudouridine synthase family protein (TAIR:AT1G78910.1); Has 11580 Blast hits to 11569 proteins in 1450 species: Archae - 12; Bacteria - 7208; Metazoa - 223; Fungi - 139; Plants - 126; Viruses - 0; Other Eukaryotes - 3872 (source: NCBI BLink).  protein_id AT3G19440.1p  transcript_id AT3G19440.1  protein_id AT3G19440.1p  transcript_id AT3G19440.1  
At3g19450	chr3:006744859	0.0	W/6744859-6744950,6745066-6745179,6745937-6746164,6746252-6746691,6746782-6747005	AT3G19450.1  CDS  gene_syn ATCAD4, CAD, CAD-C, CAD4, CINNAMYL ALCOHOL DEHYDROGENASE 4  gene ATCAD4  function Encodes a catalytically active cinnamyl alcohol dehydrogenase which uses p-coumaryl aldehyde as a preferred substrate. It can also use caffeyl, coniferyl and d-hydroxyconiferyl aldehydes as substrates.  go_component cellular_component|GO:0005575||ND  go_process lignin biosynthetic process|GO:0009809|15937231|IGI  go_process lignin biosynthetic process|GO:0009809|7870825|TAS  go_function cinnamyl-alcohol dehydrogenase activity|GO:0045551|14745009|IDA  product ATCAD4; cinnamyl-alcohol dehydrogenase  note ATCAD4; FUNCTIONS IN: cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: lignin biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: ATCAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5); cinnamyl-alcohol dehydrogenase (TAIR:AT4G34230.1); Has 25361 Blast hits to 25342 proteins in 1837 species: Archae - 364; Bacteria - 14499; Metazoa - 1300; Fungi - 2005; Plants - 1840; Viruses - 3; Other Eukaryotes - 5350 (source: NCBI BLink).  protein_id AT3G19450.1p  transcript_id AT3G19450.1  protein_id AT3G19450.1p  transcript_id AT3G19450.1  
At3g19460	chr3:006747600	0.0	W/6747600-6747663,6747929-6748109,6748357-6748498,6748601-6748670,6748759-6748904	AT3G19460.1  CDS  go_component endoplasmic reticulum|GO:0005783||IEA  go_component endoplasmic reticulum|GO:0005783||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product reticulon family protein (RTNLB11)  note reticulon family protein (RTNLB11); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: reticulon family protein (RTNLB10) (TAIR:AT2G15280.1); Has 872 Blast hits to 872 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 611; Fungi - 2; Plants - 245; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT3G19460.1p  transcript_id AT3G19460.1  protein_id AT3G19460.1p  transcript_id AT3G19460.1  
At3g19460	chr3:006747913	0.0	W/6747913-6748109,6748357-6748670,6748759-6748904	AT3G19460.2  CDS  go_component endoplasmic reticulum|GO:0005783||IEA  go_component endoplasmic reticulum|GO:0005783||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product reticulon family protein (RTNLB11)  note reticulon family protein (RTNLB11); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: reticulon family protein (RTNLB10) (TAIR:AT2G15280.1); Has 778 Blast hits to 778 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 530; Fungi - 0; Plants - 239; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G19460.2p  transcript_id AT3G19460.2  protein_id AT3G19460.2p  transcript_id AT3G19460.2  
At3g19470	chr3:006749766	0.0	W/6749766-6750914	AT3G19470.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein-related (TAIR:AT3G22770.1); Has 770 Blast hits to 739 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 769; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G19470.1p  transcript_id AT3G19470.1  protein_id AT3G19470.1p  transcript_id AT3G19470.1  
At3g19470	chr3:006749766	0.0	W/6749766-6750914	AT3G19470.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein-related (TAIR:AT3G22770.1); Has 770 Blast hits to 739 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 769; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G19470.2p  transcript_id AT3G19470.2  protein_id AT3G19470.2p  transcript_id AT3G19470.2  
At3g19480	chr3:006752590	0.0	W/6752590-6753100,6753183-6753670,6753747-6753842,6753979-6754650	AT3G19480.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process L-serine biosynthetic process|GO:0006564||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function phosphoglycerate dehydrogenase activity|GO:0004617||IEA  go_function binding|GO:0005488||IEA  go_function amino acid binding|GO:0016597||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_function cofactor binding|GO:0048037||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  product D-3-phosphoglycerate dehydrogenase, putative / 3-PGDH, putative  note D-3-phosphoglycerate dehydrogenase, putative / 3-PGDH, putative; FUNCTIONS IN: in 7 functions; INVOLVED IN: L-serine biosynthetic process, metabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: D-3-phosphoglycerate dehydrogenase (InterPro:IPR006236), D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), D-3-phosphogylcerate Dehydrogenase (InterPro:IPR015508), Amino acid-binding ACT (InterPro:IPR002912), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: EDA9 (embryo sac development arrest 9); ATP binding (TAIR:AT4G34200.1); Has 20814 Blast hits to 20813 proteins in 1550 species: Archae - 283; Bacteria - 9837; Metazoa - 666; Fungi - 748; Plants - 301; Viruses - 5; Other Eukaryotes - 8974 (source: NCBI BLink).  protein_id AT3G19480.1p  transcript_id AT3G19480.1  protein_id AT3G19480.1p  transcript_id AT3G19480.1  
At3g19490	chr3:006757888	0.0	C/6757888-6758127,6757488-6757664,6757270-6757398,6757002-6757178,6756802-6756908,6756499-6756619,6755922-6755983,6755506-6755808,6755119-6755413,6754875-6754994	AT3G19490.1  CDS  gene_syn ARABIDOPSIS THALIANA NA/H ANTIPORTER 1, ATNHD1, NHD1, SODIUM:HYDROGEN ANTIPORTER 1  gene NHD1  function member of Na+/H+ antiporter-Putative family  go_component chloroplast|GO:0009507||IEA  go_component integral to membrane|GO:0016021||IEA  go_process sodium ion transport|GO:0006814|11500563|ISS  go_function sodium:hydrogen antiporter activity|GO:0015385|11500563|ISS  go_function potassium:hydrogen antiporter activity|GO:0015386||ISS  product ATNHD1; potassium:hydrogen antiporter/ sodium:hydrogen antiporter  note ATNHD1; FUNCTIONS IN: sodium:hydrogen antiporter activity, potassium:hydrogen antiporter activity; INVOLVED IN: sodium ion transport; LOCATED IN: integral to membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Na+/H+ antiporter NhaD-like (InterPro:IPR018390), Divalent ion symporter (InterPro:IPR004680); BEST Arabidopsis thaliana protein match is: ATNHD2; potassium:hydrogen antiporter/ sodium:hydrogen antiporter (TAIR:AT1G49810.1); Has 1710 Blast hits to 1708 proteins in 442 species: Archae - 61; Bacteria - 940; Metazoa - 36; Fungi - 32; Plants - 32; Viruses - 0; Other Eukaryotes - 609 (source: NCBI BLink).  protein_id AT3G19490.1p  transcript_id AT3G19490.1  protein_id AT3G19490.1p  transcript_id AT3G19490.1  
At3g19500	chr3:006760537	0.0	C/6760537-6760893,6760335-6760439,6760134-6760199,6759555-6759656,6759289-6759471	AT3G19500.1  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product ethylene-responsive protein -related  note ethylene-responsive protein -related; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: shoot apex, embryo, pedicel, root; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: ethylene-responsive protein -related (TAIR:AT1G49830.1); Has 777 Blast hits to 777 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 777; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G19500.1p  transcript_id AT3G19500.1  protein_id AT3G19500.1p  transcript_id AT3G19500.1  
At3g19508	chr3:006762505	0.0	C/6762505-6762696,6762378-6762431	AT3G19508.1  CDS  go_component mitochondrion|GO:0005739||IEA  product unknown protein  note unknown protein; LOCATED IN: mitochondrion; Has 17 Blast hits to 17 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G19508.1p  transcript_id AT3G19508.1  protein_id AT3G19508.1p  transcript_id AT3G19508.1  
At3g19510	chr3:006765421	0.0	C/6765421-6766049,6765134-6765299,6764903-6765026,6764699-6764811,6764058-6764615,6763683-6763973,6763497-6763586,6763205-6763405	AT3G19510.1  CDS  gene_syn HAT3.1  gene HAT3.1  function Encodes a member of the PHD-finger homeodomain protein family. The HAT3.1 homeodomain is highly divergent in sequence even at positions that are almost invariable among homeodomains. HAT3.1 shows a preference for the sequence T(A/G)(A/C)ACCA, different from those bound by other homeodomains.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process positive regulation of transcription|GO:0045941|10982874|IDA  go_function DNA binding|GO:0003677|8106082|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|10982874|IDA  go_function sequence-specific DNA binding|GO:0043565|17530779|IDA  product HAT3.1; DNA binding / sequence-specific DNA binding / transcription activator/ transcription factor  note HAT3.1; FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding, transcription activator activity, DNA binding; INVOLVED IN: positive regulation of transcription, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Homeodomain-like (InterPro:IPR009057), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: PRHA (PATHOGENESIS RELATED HOMEODOMAIN PROTEIN A); protein binding / sequence-specific DNA binding / transcription activator/ transcription factor (TAIR:AT4G29940.1); Has 18877 Blast hits to 11236 proteins in 695 species: Archae - 76; Bacteria - 4330; Metazoa - 6247; Fungi - 2229; Plants - 913; Viruses - 209; Other Eukaryotes - 4873 (source: NCBI BLink).  protein_id AT3G19510.1p  transcript_id AT3G19510.1  protein_id AT3G19510.1p  transcript_id AT3G19510.1  
At3g19515	chr3:006771022	0.0	C/6771022-6771078,6770725-6770892,6770268-6770367,6770097-6770179,6769805-6769915,6769547-6769636,6769362-6769468,6769135-6769255,6768974-6769039,6768788-6768885,6768443-6768689,6767405-6768364,6767052-6767173,6766872-6766959	AT3G19515.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Apoptosis inhibitory 5 (InterPro:IPR008383); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23935.1); Has 489 Blast hits to 360 proteins in 69 species: Archae - 0; Bacteria - 3; Metazoa - 215; Fungi - 17; Plants - 81; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).  protein_id AT3G19515.2p  transcript_id AT3G19515.2  protein_id AT3G19515.2p  transcript_id AT3G19515.2  
At3g19520	chr3:006772773	0.0	W/6772773-6772853,6772948-6773094,6773232-6773427,6773501-6773625,6773716-6773802,6773907-6774209	AT3G19520.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28500.1); Has 77 Blast hits to 76 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G19520.1p  transcript_id AT3G19520.1  protein_id AT3G19520.1p  transcript_id AT3G19520.1  
At3g19520	chr3:006772773	0.0	W/6772773-6772853,6772948-6773094,6773232-6773427,6773501-6773625,6773716-6773802,6773907-6774209	AT3G19520.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28500.1); Has 77 Blast hits to 76 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G19520.2p  transcript_id AT3G19520.2  protein_id AT3G19520.2p  transcript_id AT3G19520.2  
At3g19530	chr3:006775265	0.0	C/6775265-6775549	AT3G19530.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G19530.1p  transcript_id AT3G19530.1  protein_id AT3G19530.1p  transcript_id AT3G19530.1  
At3g19540	chr3:006780762	0.0	W/6780762-6781247,6781584-6781928,6782007-6782633	AT3G19540.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF620 (InterPro:IPR006873); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G49840.1); Has 153 Blast hits to 150 proteins in 31 species: Archae - 0; Bacteria - 3; Metazoa - 14; Fungi - 12; Plants - 117; Viruses - 5; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G19540.1p  transcript_id AT3G19540.1  protein_id AT3G19540.1p  transcript_id AT3G19540.1  
At3g19550	chr3:006788122	0.0	C/6788122-6788165,6787462-6787750	AT3G19550.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; Has 16 Blast hits to 16 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G19550.1p  transcript_id AT3G19550.1  protein_id AT3G19550.1p  transcript_id AT3G19550.1  
At3g19553	chr3:006791528	0.0	C/6791528-6792507,6790988-6791447	AT3G19553.1  CDS  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_process amino acid transport|GO:0006865||IEA  go_function cationic amino acid transmembrane transporter activity|GO:0015326||ISS  product amino acid permease family protein  note amino acid permease family protein; FUNCTIONS IN: cationic amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport, transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease-associated region (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: amino acid permease family protein (TAIR:AT1G31830.2); Has 9165 Blast hits to 9158 proteins in 1063 species: Archae - 186; Bacteria - 7195; Metazoa - 728; Fungi - 324; Plants - 200; Viruses - 0; Other Eukaryotes - 532 (source: NCBI BLink).  protein_id AT3G19553.1p  transcript_id AT3G19553.1  protein_id AT3G19553.1p  transcript_id AT3G19553.1  
At3g19560	chr3:006793732	0.0	W/6793732-6794802	AT3G19560.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G51000.1); Has 662 Blast hits to 636 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 660; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G19560.1p  transcript_id AT3G19560.1  protein_id AT3G19560.1p  transcript_id AT3G19560.1  
At3g19570	chr3:006797778	0.0	W/6797778-6799226,6799742-6799861,6800381-6800497,6800613-6800702,6801106-6801198,6801279-6801293	AT3G19570.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF566 (InterPro:IPR007573); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G49890.1); Has 4345 Blast hits to 1557 proteins in 226 species: Archae - 6; Bacteria - 918; Metazoa - 1157; Fungi - 573; Plants - 151; Viruses - 57; Other Eukaryotes - 1483 (source: NCBI BLink).  protein_id AT3G19570.1p  transcript_id AT3G19570.1  protein_id AT3G19570.1p  transcript_id AT3G19570.1  
At3g19570	chr3:006797778	0.0	W/6797778-6799226,6799742-6799861,6800381-6800497,6800613-6800702,6801106-6801213,6801294-6801344	AT3G19570.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF566 (InterPro:IPR007573); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G49890.1); Has 4345 Blast hits to 1563 proteins in 227 species: Archae - 6; Bacteria - 918; Metazoa - 1154; Fungi - 576; Plants - 151; Viruses - 57; Other Eukaryotes - 1483 (source: NCBI BLink).  protein_id AT3G19570.2p  transcript_id AT3G19570.2  protein_id AT3G19570.2p  transcript_id AT3G19570.2  
At3g19580	chr3:006803293	0.0	C/6803293-6804114	AT3G19580.1  CDS  gene_syn ARABIDOPSIS ZINC-FINGER PROTEIN 2, AZF2, MMB12.27  gene AZF2  function Encodes zinc finger protein. mRNA levels are upregulated in response to ABA, high salt, and mild dessication. The protein is localized to the nucleus and acts as a transcriptional repressor.  go_component nucleus|GO:0005634|10806347|ISS  go_component nucleus|GO:0005634|15333755|IDA  go_process response to water deprivation|GO:0009414|10806347|IEP  go_process response to abscisic acid stimulus|GO:0009737|10806347|IEP  go_process embryonic development ending in seed dormancy|GO:0009793|10806347|IEP  go_process response to chitin|GO:0010200|17722694|IEP  go_process hyperosmotic salinity response|GO:0042538|10806347|IEP  go_function nucleic acid binding|GO:0003676||ISS  go_function DNA binding|GO:0003677|10806347|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  go_function transcription repressor activity|GO:0016564|15333755|IDA  product AZF2 (ARABIDOPSIS ZINC-FINGER PROTEIN 2); DNA binding / nucleic acid binding / transcription factor/ transcription repressor/ zinc ion binding  note ARABIDOPSIS ZINC-FINGER PROTEIN 2 (AZF2); FUNCTIONS IN: transcription repressor activity, transcription factor activity, DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: embryonic development ending in seed dormancy, response to water deprivation, hyperosmotic salinity response, response to chitin, response to abscisic acid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: STZ (salt tolerance zinc finger); nucleic acid binding / transcription factor/ transcription repressor/ zinc ion binding (TAIR:AT1G27730.1); Has 2901 Blast hits to 2329 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 2332; Fungi - 6; Plants - 496; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT3G19580.1p  transcript_id AT3G19580.1  protein_id AT3G19580.1p  transcript_id AT3G19580.1  
At3g19580	chr3:006803293	0.0	C/6803293-6804114	AT3G19580.2  CDS  gene_syn ARABIDOPSIS ZINC-FINGER PROTEIN 2, AZF2, MMB12.27  gene AZF2  function Encodes zinc finger protein. mRNA levels are upregulated in response to ABA, high salt, and mild dessication. The protein is localized to the nucleus and acts as a transcriptional repressor.  go_component nucleus|GO:0005634|10806347|ISS  go_component nucleus|GO:0005634|15333755|IDA  go_process response to water deprivation|GO:0009414|10806347|IEP  go_process response to abscisic acid stimulus|GO:0009737|10806347|IEP  go_process embryonic development ending in seed dormancy|GO:0009793|10806347|IEP  go_process response to chitin|GO:0010200|17722694|IEP  go_process hyperosmotic salinity response|GO:0042538|10806347|IEP  go_function nucleic acid binding|GO:0003676||ISS  go_function DNA binding|GO:0003677|10806347|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  go_function transcription repressor activity|GO:0016564|15333755|IDA  product AZF2 (ARABIDOPSIS ZINC-FINGER PROTEIN 2); DNA binding / nucleic acid binding / transcription factor/ transcription repressor/ zinc ion binding  note ARABIDOPSIS ZINC-FINGER PROTEIN 2 (AZF2); FUNCTIONS IN: transcription repressor activity, transcription factor activity, DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: embryonic development ending in seed dormancy, response to water deprivation, hyperosmotic salinity response, response to chitin, response to abscisic acid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: STZ (salt tolerance zinc finger); nucleic acid binding / transcription factor/ transcription repressor/ zinc ion binding (TAIR:AT1G27730.1); Has 2901 Blast hits to 2329 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 2332; Fungi - 6; Plants - 496; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT3G19580.2p  transcript_id AT3G19580.2  protein_id AT3G19580.2p  transcript_id AT3G19580.2  
At3g19590	chr3:006805798	0.0	W/6805798-6805914,6806019-6806149,6806376-6806458,6806714-6806980,6807096-6807171,6807244-6807324,6807736-6807814,6807901-6808001,6808287-6808374	AT3G19590.1  CDS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product WD-40 repeat family protein / mitotic checkpoint protein, putative  note WD-40 repeat family protein / mitotic checkpoint protein, putative; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein / mitotic checkpoint protein, putative (TAIR:AT1G49910.1); Has 5445 Blast hits to 4008 proteins in 309 species: Archae - 14; Bacteria - 1198; Metazoa - 1895; Fungi - 1134; Plants - 290; Viruses - 0; Other Eukaryotes - 914 (source: NCBI BLink).  protein_id AT3G19590.1p  transcript_id AT3G19590.1  protein_id AT3G19590.1p  transcript_id AT3G19590.1  
At3g19595	chr3:006808585	0.0	C/6808585-6809508	AT3G19595.1  CDS  go_component nucleus|GO:0005634||IEA  go_function phosphoprotein phosphatase activity|GO:0004721||IEA  product phosphoprotein phosphatase  note phosphoprotein phosphatase; FUNCTIONS IN: phosphoprotein phosphatase activity; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: FCP1-like phosphatase, phosphatase domain (InterPro:IPR011947), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: NLI interacting factor (NIF) family protein (TAIR:AT2G04930.1); Has 909 Blast hits to 907 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 310; Fungi - 117; Plants - 146; Viruses - 0; Other Eukaryotes - 336 (source: NCBI BLink).  protein_id AT3G19595.1p  transcript_id AT3G19595.1  protein_id AT3G19595.1p  transcript_id AT3G19595.1  
At3g19600	chr3:006810798	0.0	C/6810798-6811742	AT3G19600.1  CDS  go_component nucleus|GO:0005634||IEA  go_function phosphoprotein phosphatase activity|GO:0004721||IEA  go_process biological_process|GO:0008150||ND  product phosphoprotein phosphatase  note phosphoprotein phosphatase; FUNCTIONS IN: phosphoprotein phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: FCP1-like phosphatase, phosphatase domain (InterPro:IPR011947), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: phosphoprotein phosphatase (TAIR:AT3G19595.1); Has 784 Blast hits to 784 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 237; Fungi - 139; Plants - 136; Viruses - 0; Other Eukaryotes - 272 (source: NCBI BLink).  protein_id AT3G19600.1p  transcript_id AT3G19600.1  protein_id AT3G19600.1p  transcript_id AT3G19600.1  
At3g19610	chr3:006813869	0.0	C/6813869-6814660,6813516-6813782,6813342-6813433,6812493-6813264	AT3G19610.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF936, plant (InterPro:IPR010341); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G08760.1); Has 205 Blast hits to 170 proteins in 44 species: Archae - 0; Bacteria - 14; Metazoa - 33; Fungi - 8; Plants - 115; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT3G19610.1p  transcript_id AT3G19610.1  protein_id AT3G19610.1p  transcript_id AT3G19610.1  
At3g19615	chr3:006815073	0.0	C/6815073-6815354	AT3G19615.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G19615.1p  transcript_id AT3G19615.1  protein_id AT3G19615.1p  transcript_id AT3G19615.1  
At3g19620	chr3:006818012	0.0	C/6818012-6818308,6817532-6817921,6817185-6817452,6816320-6817087,6815613-6816235	AT3G19620.1  CDS  go_component cell wall|GO:0005618|15593128|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 3 protein  note glycosyl hydrolase family 3 protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: XYL4; hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase (TAIR:AT5G64570.1); Has 5080 Blast hits to 4452 proteins in 647 species: Archae - 16; Bacteria - 2432; Metazoa - 10; Fungi - 947; Plants - 291; Viruses - 0; Other Eukaryotes - 1384 (source: NCBI BLink).  protein_id AT3G19620.1p  transcript_id AT3G19620.1  protein_id AT3G19620.1p  transcript_id AT3G19620.1  
At3g19630	chr3:006820420	0.0	C/6820420-6820674,6820189-6820299,6819977-6820111,6819740-6819844,6819218-6819387,6819008-6819107,6818676-6818918	AT3G19630.1  CDS  go_component cytoplasm|GO:0005737||IEA  go_process rRNA processing|GO:0006364||IEA  go_function catalytic activity|GO:0003824||IEA  go_function RNA methyltransferase activity|GO:0008173||IEA  go_function iron-sulfur cluster binding|GO:0051536||IEA  product radical SAM domain-containing protein  note radical SAM domain-containing protein; FUNCTIONS IN: iron-sulfur cluster binding, catalytic activity, RNA methyltransferase activity; INVOLVED IN: rRNA processing; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00048 (InterPro:IPR004383), Radical SAM (InterPro:IPR007197); BEST Arabidopsis thaliana protein match is: radical SAM domain-containing protein (TAIR:AT2G39670.2); Has 4584 Blast hits to 4582 proteins in 1262 species: Archae - 4; Bacteria - 2878; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 3; Other Eukaryotes - 1621 (source: NCBI BLink).  protein_id AT3G19630.1p  transcript_id AT3G19630.1  protein_id AT3G19630.1p  transcript_id AT3G19630.1  
At3g19640	chr3:006820969	0.0	W/6820969-6821400,6821687-6821899,6821978-6822106,6822253-6822413,6822490-6822721,6822817-6823104	AT3G19640.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process metal ion transport|GO:0030001||IEA  go_function metal ion transmembrane transporter activity|GO:0046873||IEA  go_component membrane|GO:0016020||ISS  go_process metal ion transport|GO:0030001||ISS  go_function metal ion transmembrane transporter activity|GO:0046873||ISS  product magnesium transporter CorA-like family protein (MRS2-3)  note magnesium transporter CorA-like family protein (MRS2-3); FUNCTIONS IN: metal ion transmembrane transporter activity; INVOLVED IN: metal ion transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mg2+ transporter protein, CorA-like (InterPro:IPR002523); BEST Arabidopsis thaliana protein match is: magnesium transporter CorA-like family protein (MRS2-1) (TAIR:AT1G16010.2); Has 603 Blast hits to 521 proteins in 126 species: Archae - 0; Bacteria - 31; Metazoa - 102; Fungi - 198; Plants - 203; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT3G19640.1p  transcript_id AT3G19640.1  protein_id AT3G19640.1p  transcript_id AT3G19640.1  
At3g19650	chr3:006823543	0.0	W/6823543-6823613,6823928-6824171,6824467-6824515,6824630-6825174	AT3G19650.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product cyclin-related  note cyclin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase, putative (TAIR:AT1G20920.1); Has 5115 Blast hits to 3466 proteins in 242 species: Archae - 0; Bacteria - 193; Metazoa - 2936; Fungi - 571; Plants - 368; Viruses - 7; Other Eukaryotes - 1040 (source: NCBI BLink).  protein_id AT3G19650.1p  transcript_id AT3G19650.1  protein_id AT3G19650.1p  transcript_id AT3G19650.1  
At3g19660	chr3:006825678	0.0	C/6825678-6825872	AT3G19660.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, hypocotyl, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G19660.1p  transcript_id AT3G19660.1  protein_id AT3G19660.1p  transcript_id AT3G19660.1  
At3g19663	chr3:006826768	0.0	W/6826768-6826911	AT3G19663.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G19663.1p  transcript_id AT3G19663.1  protein_id AT3G19663.1p  transcript_id AT3G19663.1  
At3g19670	chr3:006836550	0.0	C/6836550-6836582,6836263-6836331,6835847-6836182,6835631-6835771,6835468-6835544,6834526-6834595,6833858-6833910,6833702-6833759,6833282-6833607,6833108-6833177,6832903-6833022,6832740-6832808,6832594-6832671,6832321-6832407,6832163-6832197,6831959-6832064,6831525-6831605,6831351-6831443,6831233-6831286,6831031-6831147,6830838-6830936,6830512-6830559,6830351-6830443,6830048-6830155,6829886-6829950,6829232-6829325,6828680-6828961,6828242-6828358	AT3G19670.1  CDS  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: FF (InterPro:IPR002713), WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis thaliana protein match is: protein binding (TAIR:AT1G44910.2); Has 13502 Blast hits to 9262 proteins in 461 species: Archae - 71; Bacteria - 487; Metazoa - 7005; Fungi - 1048; Plants - 690; Viruses - 29; Other Eukaryotes - 4172 (source: NCBI BLink).  protein_id AT3G19670.1p  transcript_id AT3G19670.1  protein_id AT3G19670.1p  transcript_id AT3G19670.1  
At3g19680	chr3:006840448	0.0	W/6840448-6841148,6841333-6842107	AT3G19680.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  product unknown protein  note unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1005 (InterPro:IPR010410); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G50040.1); Has 728 Blast hits to 127 proteins in 32 species: Archae - 0; Bacteria - 22; Metazoa - 26; Fungi - 20; Plants - 72; Viruses - 0; Other Eukaryotes - 588 (source: NCBI BLink).  protein_id AT3G19680.1p  transcript_id AT3G19680.1  protein_id AT3G19680.1p  transcript_id AT3G19680.1  
At3g19690	chr3:006842365	0.0	C/6842365-6842850	AT3G19690.1  CDS  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_component extracellular region|GO:0005576||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pathogenesis-related protein, putative  note pathogenesis-related protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related, conserved site (InterPro:IPR018244), Allergen V5/Tpx-1 related (InterPro:IPR001283), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: ATPRB1 (TAIR:AT2G14580.1); Has 2340 Blast hits to 2252 proteins in 297 species: Archae - 0; Bacteria - 51; Metazoa - 1405; Fungi - 220; Plants - 602; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT3G19690.1p  transcript_id AT3G19690.1  protein_id AT3G19690.1p  transcript_id AT3G19690.1  
At3g19700	chr3:006843662	0.0	W/6843662-6846248,6846403-6846791	AT3G19700.1  CDS  gene_syn HAIKU2, IKU2  gene IKU2  function Encodes leucine rich repeat (LRR) kinase. Iku2-3 identified in a screen for mutants with abnormal endosperm. Sporophytic recessive mutants have reduced embryo and endosperm size. Seed size is also reduced and the shape is abnormal suggesting an interaction between the endosperm and cell elongation in the integuments.  go_component endomembrane system|GO:0012505||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process endosperm development|GO:0009960|12692325|IMP  go_function protein kinase activity|GO:0004672||ISS  go_function ATP binding|GO:0005524||ISS  product IKU2 (HAIKU2); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase  note HAIKU2 (IKU2); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, endosperm development; LOCATED IN: endomembrane system; EXPRESSED IN: fruit; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: LRR XI-23; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT1G09970.1); Has 146346 Blast hits to 100220 proteins in 3251 species: Archae - 84; Bacteria - 12638; Metazoa - 59361; Fungi - 7343; Plants - 47328; Viruses - 429; Other Eukaryotes - 19163 (source: NCBI BLink).  protein_id AT3G19700.1p  transcript_id AT3G19700.1  protein_id AT3G19700.1p  transcript_id AT3G19700.1  
At3g19710	chr3:006849398	0.0	C/6849398-6849429,6849112-6849289,6848565-6848741,6848333-6848464,6848051-6848146,6847857-6847973,6847663-6847758,6847424-6847536,6847202-6847325	AT3G19710.1  CDS  gene_syn BCAT4, BRANCHED-CHAIN AMINOTRANSFERASE4  gene BCAT4  function Belongs to the branched-chain amino acid aminotransferase gene family. Encodes a methionine-oxo-acid transaminase. Involved in the methionine chain elongation pathway that leads to the ultimate biosynthesis of methionine-derived glucosinolates.  go_component cytosol|GO:0005829|17056707|IDA  go_process glucosinolate biosynthetic process|GO:0019761|17056707|IMP  go_function catalytic activity|GO:0003824||ISS  go_function methionine-oxo-acid transaminase activity|GO:0010326|17056707|IDA  product BCAT4 (BRANCHED-CHAIN AMINOTRANSFERASE4); catalytic/ methionine-oxo-acid transaminase  note BRANCHED-CHAIN AMINOTRANSFERASE4 (BCAT4); FUNCTIONS IN: methionine-oxo-acid transaminase activity, catalytic activity; INVOLVED IN: glucosinolate biosynthetic process; LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Branched-chain amino acid aminotransferase II (InterPro:IPR005786); BEST Arabidopsis thaliana protein match is: branched-chain amino acid aminotransferase 6 / branched-chain amino acid transaminase 6 (BCAT6) (TAIR:AT1G50110.1); Has 7527 Blast hits to 7527 proteins in 1357 species: Archae - 99; Bacteria - 3629; Metazoa - 243; Fungi - 244; Plants - 155; Viruses - 0; Other Eukaryotes - 3157 (source: NCBI BLink).  protein_id AT3G19710.1p  transcript_id AT3G19710.1  protein_id AT3G19710.1p  transcript_id AT3G19710.1  
At3g19720	chr3:006855027	0.0	C/6855027-6855389,6854698-6854865,6854480-6854602,6854182-6854403,6853972-6854105,6853788-6853880,6853610-6853673,6853174-6853222,6852808-6852890,6852417-6852574,6852212-6852272,6851838-6851900,6851650-6851750,6851488-6851545,6851049-6851381,6850788-6850952,6850591-6850686	AT3G19720.1  CDS  gene_syn ACCUMULATION AND REPLICATION OF CHLOROPLAST 5, ARC5  gene ARC5  function Encodes a novel chloroplast division protein. Mutants of exhibit defects in chloroplast constriction, have enlarged, dumbbell-shaped chloroplasts. The ARC5 gene product shares similarity with the dynamin family of GTPases, which mediate endocytosis, mitochondrial division, and other organellar fission and fusion events in eukaryotes. Phylogenetic analysis showed that ARC5 is related to a group of dynamin-like proteins unique to plants. A GFP ARC5 fusion protein localizes to a ring at the chloroplast division site. Chloroplast import and protease protection assays indicate that the ARC5 ring is positioned on the outer surface of the chloroplast. Facilitates separation of the two daughter chloroplasts.  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_component chloroplast outer membrane|GO:0009707|12642673|IDA  go_process chloroplast fission|GO:0010020|10417716|IMP  product ARC5 (ACCUMULATION AND REPLICATION OF CHLOROPLAST 5); GTP binding / GTPase  note ACCUMULATION AND REPLICATION OF CHLOROPLAST 5 (ARC5); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: chloroplast fission; LOCATED IN: chloroplast outer membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dynamin, GTPase region (InterPro:IPR001401); BEST Arabidopsis thaliana protein match is: dynamin family protein (TAIR:AT1G53140.1); Has 1632 Blast hits to 1631 proteins in 215 species: Archae - 0; Bacteria - 2; Metazoa - 846; Fungi - 334; Plants - 231; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).  protein_id AT3G19720.1p  transcript_id AT3G19720.1  protein_id AT3G19720.1p  transcript_id AT3G19720.1  
At3g19720	chr3:006855027	0.0	C/6855027-6855389,6854698-6854865,6854480-6854602,6854182-6854403,6853972-6854105,6853788-6853880,6853610-6853673,6853174-6853222,6852808-6852890,6852417-6852574,6852212-6852272,6851838-6851900,6851650-6851750,6851488-6851545,6851318-6851381,6851049-6851209,6850788-6850952,6850591-6850686	AT3G19720.2  CDS  gene_syn ACCUMULATION AND REPLICATION OF CHLOROPLAST 5, ARC5  gene ARC5  function Encodes a novel chloroplast division protein. Mutants of exhibit defects in chloroplast constriction, have enlarged, dumbbell-shaped chloroplasts. The ARC5 gene product shares similarity with the dynamin family of GTPases, which mediate endocytosis, mitochondrial division, and other organellar fission and fusion events in eukaryotes. Phylogenetic analysis showed that ARC5 is related to a group of dynamin-like proteins unique to plants. A GFP ARC5 fusion protein localizes to a ring at the chloroplast division site. Chloroplast import and protease protection assays indicate that the ARC5 ring is positioned on the outer surface of the chloroplast. Facilitates separation of the two daughter chloroplasts.  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_component chloroplast outer membrane|GO:0009707|12642673|IDA  go_process chloroplast fission|GO:0010020|10417716|IMP  product ARC5 (ACCUMULATION AND REPLICATION OF CHLOROPLAST 5); GTP binding / GTPase  note ACCUMULATION AND REPLICATION OF CHLOROPLAST 5 (ARC5); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: chloroplast fission; LOCATED IN: chloroplast outer membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dynamin, GTPase region (InterPro:IPR001401); BEST Arabidopsis thaliana protein match is: dynamin family protein (TAIR:AT1G53140.1); Has 1635 Blast hits to 1631 proteins in 215 species: Archae - 0; Bacteria - 2; Metazoa - 846; Fungi - 334; Plants - 231; Viruses - 0; Other Eukaryotes - 222 (source: NCBI BLink).  protein_id AT3G19720.2p  transcript_id AT3G19720.2  protein_id AT3G19720.2p  transcript_id AT3G19720.2  
At3g19740	chr3:006862377	0.0	C/6862377-6862930,6862163-6862287,6861949-6862043,6861631-6861855,6861199-6861283,6860895-6860946,6860276-6860427,6860081-6860175,6859571-6859765,6859450-6859488,6859017-6859124,6858522-6858611,6858353-6858428,6857953-6858049,6857796-6857865,6857527-6857703,6857303-6857425,6856992-6857075,6856682-6856866,6856464-6856602,6856320-6856379,6856154-6856225,6855944-6856051	AT3G19740.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process biological_process|GO:0008150||ND  go_function ATPase activity|GO:0016887||ISS  product ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding  note ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (TAIR:AT1G50140.2); Has 23534 Blast hits to 21772 proteins in 1833 species: Archae - 884; Bacteria - 7490; Metazoa - 4081; Fungi - 2281; Plants - 1485; Viruses - 84; Other Eukaryotes - 7229 (source: NCBI BLink).  protein_id AT3G19740.1p  transcript_id AT3G19740.1  protein_id AT3G19740.1p  transcript_id AT3G19740.1  
At3g19760	chr3:006863790	0.0	W/6863790-6864097,6864410-6864731,6864987-6865094,6865199-6865318,6865638-6865805,6865944-6866030,6866129-6866242	AT3G19760.1  CDS  go_component nucleus|GO:0005634|14617066|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function ATP-dependent helicase activity|GO:0008026||ISS  product eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative  note eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative; FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; LOCATED IN: nucleolus, nucleus, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 4A, putative / eIF-4A, putative (TAIR:AT1G51380.1); Has 32402 Blast hits to 31825 proteins in 1817 species: Archae - 512; Bacteria - 14379; Metazoa - 5291; Fungi - 3422; Plants - 1433; Viruses - 38; Other Eukaryotes - 7327 (source: NCBI BLink).  protein_id AT3G19760.1p  transcript_id AT3G19760.1  protein_id AT3G19760.1p  transcript_id AT3G19760.1  
At3g19770	chr3:006866916	0.0	W/6866916-6867007,6867349-6867496,6867578-6867748,6867839-6868018,6868143-6869114	AT3G19770.1  CDS  gene_syn ARABIDOPSIS THALIANA VACUOLAR PROTEIN SORTING 9A, ATVPS9A, MMB12.26, VPS9A  gene VPS9A  function Guanine nucleotide exchange factor VPS9a. Can ctivate all Rab5 members to GTP-bound forms in vitro. Required for embryogenesis. Regulates the localization of ARA7 and ARA6. Involved in postembryonic root development.  go_component membrane|GO:0016020|17432890|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process cell plate formation|GO:0000919|18055610|IMP  go_process transport|GO:0006810||ISS  go_process embryonic development|GO:0009790|18055610|IMP  go_process cell wall biogenesis|GO:0042546|18055610|IMP  go_process post-embryonic root development|GO:0048528|18055610|IMP  go_function Rho guanyl-nucleotide exchange factor activity|GO:0005089|18055610|IDA  product VPS9A; Rho guanyl-nucleotide exchange factor  note VPS9A; FUNCTIONS IN: Rho guanyl-nucleotide exchange factor activity; INVOLVED IN: embryonic development, cell plate formation, cell wall biogenesis, transport, post-embryonic root development; LOCATED IN: cytosol, nucleus, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar sorting protein 9, subgroup (InterPro:IPR013995), Vacuolar sorting protein 9 (InterPro:IPR003123); BEST Arabidopsis thaliana protein match is: VPS9B (TAIR:AT5G09320.1); Has 775 Blast hits to 767 proteins in 147 species: Archae - 0; Bacteria - 4; Metazoa - 438; Fungi - 141; Plants - 47; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink).  protein_id AT3G19770.1p  transcript_id AT3G19770.1  protein_id AT3G19770.1p  transcript_id AT3G19770.1  
At3g19770	chr3:006867742	0.0	W/6867742-6867748,6867843-6868018,6868143-6869114	AT3G19770.2  CDS  gene_syn ARABIDOPSIS THALIANA VACUOLAR PROTEIN SORTING 9A, ATVPS9A, MMB12.26, VPS9A  gene VPS9A  function Guanine nucleotide exchange factor VPS9a. Can ctivate all Rab5 members to GTP-bound forms in vitro. Required for embryogenesis. Regulates the localization of ARA7 and ARA6. Involved in postembryonic root development.  go_component membrane|GO:0016020|17432890|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process cell plate formation|GO:0000919|18055610|IMP  go_process transport|GO:0006810||ISS  go_process embryonic development|GO:0009790|18055610|IMP  go_process cell wall biogenesis|GO:0042546|18055610|IMP  go_process post-embryonic root development|GO:0048528|18055610|IMP  go_function Rho guanyl-nucleotide exchange factor activity|GO:0005089|18055610|IDA  product VPS9A; Rho guanyl-nucleotide exchange factor  note VPS9A; FUNCTIONS IN: Rho guanyl-nucleotide exchange factor activity; INVOLVED IN: embryonic development, cell plate formation, cell wall biogenesis, transport, post-embryonic root development; LOCATED IN: cytosol, nucleus, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar sorting protein 9, subgroup (InterPro:IPR013995), Vacuolar sorting protein 9 (InterPro:IPR003123); BEST Arabidopsis thaliana protein match is: VPS9B (TAIR:AT5G09320.1); Has 739 Blast hits to 733 proteins in 145 species: Archae - 0; Bacteria - 4; Metazoa - 430; Fungi - 139; Plants - 41; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).  protein_id AT3G19770.2p  transcript_id AT3G19770.2  protein_id AT3G19770.2p  transcript_id AT3G19770.2  
At3g19780	chr3:006870238	0.0	W/6870238-6870394,6870526-6870930,6871287-6871675,6871920-6873225,6873361-6873461,6873618-6873750,6873989-6874677	AT3G19780.1  CDS  gene_syn MMB12.5  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF179 (InterPro:IPR003774), Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G33780.1); Has 371 Blast hits to 359 proteins in 101 species: Archae - 0; Bacteria - 90; Metazoa - 100; Fungi - 6; Plants - 72; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).  protein_id AT3G19780.1p  transcript_id AT3G19780.1  protein_id AT3G19780.1p  transcript_id AT3G19780.1  
At3g19790	chr3:006874937	0.0	C/6874937-6875440	AT3G19790.1  CDS  gene_syn MMB12.25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 27 Blast hits to 21 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 2; Plants - 9; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G19790.1p  transcript_id AT3G19790.1  protein_id AT3G19790.1p  transcript_id AT3G19790.1  
At3g19790	chr3:006874937	0.0	C/6874937-6875440	AT3G19790.2  CDS  gene_syn MMB12.25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 27 Blast hits to 21 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 2; Plants - 9; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G19790.2p  transcript_id AT3G19790.2  protein_id AT3G19790.2p  transcript_id AT3G19790.2  
At3g19800	chr3:006876153	0.0	W/6876153-6876266,6876387-6876584,6876687-6876776,6876854-6876943,6877028-6877108,6877249-6877294,6877401-6877471	AT3G19800.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 18 Blast hits to 18 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G19800.1p  transcript_id AT3G19800.1  protein_id AT3G19800.1p  transcript_id AT3G19800.1  
At3g19800	chr3:006876153	0.0	W/6876153-6876266,6876396-6876584,6876687-6876776,6876854-6876943,6877028-6877108,6877249-6877294,6877401-6877471	AT3G19800.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 18 Blast hits to 18 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G19800.2p  transcript_id AT3G19800.2  protein_id AT3G19800.2p  transcript_id AT3G19800.2  
At3g19810	chr3:006878259	0.0	C/6878259-6878812,6877756-6878167	AT3G19810.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF177 (InterPro:IPR003772); Has 362 Blast hits to 362 proteins in 133 species: Archae - 0; Bacteria - 259; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT3G19810.1p  transcript_id AT3G19810.1  protein_id AT3G19810.1p  transcript_id AT3G19810.1  
At3g19820	chr3:006880375	0.0	C/6880375-6881616,6879835-6880278	AT3G19820.1  CDS  gene_syn CABBAGE 1, CBB1, DIM, DIM1, DIMINUTIA, DIMINUTO 1, DWARF 1, DWF1, ENHANCED VERY-LOW-FLUENCE RESPONSES 1, EVE1  gene DWF1  function Involved in the conversion of the early brassinosteroid precursor 24-methylenecholesterol to campesterol. Brassinosteroids affect cellular elongation. Mutants have dwarf phenotype. DWF1 is a Ca2+-dependent calmodulin-binding protein.  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component integral to membrane|GO:0016021|9761794|IDA  go_process steroid biosynthetic process|GO:0006694|9761794|IMP  go_process response to light stimulus|GO:0009416|7828854|IMP  go_process unidimensional cell growth|GO:0009826|7828854|IMP  go_process unidimensional cell growth|GO:0009826||TAS  go_process brassinosteroid biosynthetic process|GO:0016132|10069828|IDA  go_process brassinosteroid biosynthetic process|GO:0016132|10069828|IMP  go_process brassinosteroid biosynthetic process|GO:0016132|9761794|IMP  go_function catalytic activity|GO:0003824|9761794|IMP  go_function calmodulin binding|GO:0005516|16193053|IDA  product DWF1 (DWARF 1); calmodulin binding / catalytic  note DWARF 1 (DWF1); FUNCTIONS IN: calmodulin binding, catalytic activity; INVOLVED IN: response to light stimulus, steroid biosynthetic process, unidimensional cell growth, brassinosteroid biosynthetic process; LOCATED IN: integral to membrane, plasma membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAD-linked oxidase, FAD-binding, subdomain 2 (InterPro:IPR016168), FAD-binding, type 2 (InterPro:IPR016166), FAD linked oxidase, N-terminal (InterPro:IPR006094); Has 1654 Blast hits to 1654 proteins in 395 species: Archae - 19; Bacteria - 862; Metazoa - 147; Fungi - 311; Plants - 100; Viruses - 0; Other Eukaryotes - 215 (source: NCBI BLink).  protein_id AT3G19820.1p  transcript_id AT3G19820.1  protein_id AT3G19820.1p  transcript_id AT3G19820.1  
At3g19820	chr3:006880375	0.0	C/6880375-6881616,6879835-6880278	AT3G19820.2  CDS  gene_syn CABBAGE 1, CBB1, DIM, DIM1, DIMINUTIA, DIMINUTO 1, DWARF 1, DWF1, ENHANCED VERY-LOW-FLUENCE RESPONSES 1, EVE1  gene DWF1  function Involved in the conversion of the early brassinosteroid precursor 24-methylenecholesterol to campesterol. Brassinosteroids affect cellular elongation. Mutants have dwarf phenotype. DWF1 is a Ca2+-dependent calmodulin-binding protein.  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component integral to membrane|GO:0016021|9761794|IDA  go_process steroid biosynthetic process|GO:0006694|9761794|IMP  go_process response to light stimulus|GO:0009416|7828854|IMP  go_process unidimensional cell growth|GO:0009826|7828854|IMP  go_process unidimensional cell growth|GO:0009826||TAS  go_process brassinosteroid biosynthetic process|GO:0016132|10069828|IDA  go_process brassinosteroid biosynthetic process|GO:0016132|10069828|IMP  go_process brassinosteroid biosynthetic process|GO:0016132|9761794|IMP  go_function catalytic activity|GO:0003824|9761794|IMP  go_function calmodulin binding|GO:0005516|16193053|IDA  product DWF1 (DWARF 1); calmodulin binding / catalytic  note DWARF 1 (DWF1); FUNCTIONS IN: calmodulin binding, catalytic activity; INVOLVED IN: response to light stimulus, steroid biosynthetic process, unidimensional cell growth, brassinosteroid biosynthetic process; LOCATED IN: integral to membrane, plasma membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAD-linked oxidase, FAD-binding, subdomain 2 (InterPro:IPR016168), FAD-binding, type 2 (InterPro:IPR016166), FAD linked oxidase, N-terminal (InterPro:IPR006094); Has 1654 Blast hits to 1654 proteins in 395 species: Archae - 19; Bacteria - 862; Metazoa - 147; Fungi - 311; Plants - 100; Viruses - 0; Other Eukaryotes - 215 (source: NCBI BLink).  protein_id AT3G19820.2p  transcript_id AT3G19820.2  protein_id AT3G19820.2p  transcript_id AT3G19820.2  
At3g19830	chr3:006889151	0.0	C/6889151-6889974,6888646-6888887,6888501-6888519,6888181-6888386,6887851-6887960,6887640-6887738,6886506-6886998,6886338-6886426	AT3G19830.1  CDS  gene_syn NTMC2T5.2, NTMC2TYPE5.2  gene NTMC2T5.2  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NTMC2T5.2  note NTMC2T5.2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: NTMC2T5.1 (N-TERMINAL-TRANSMEMBRANE-C2 DOMAIN TYPE 5.1) (TAIR:AT1G50260.1); Has 975 Blast hits to 825 proteins in 128 species: Archae - 0; Bacteria - 2; Metazoa - 353; Fungi - 173; Plants - 380; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT3G19830.1p  transcript_id AT3G19830.1  protein_id AT3G19830.1p  transcript_id AT3G19830.1  
At3g19830	chr3:006889151	0.0	C/6889151-6889974,6888646-6888887,6888501-6888519,6888181-6888386,6887851-6887960,6887640-6887738,6886506-6886998,6886338-6886426	AT3G19830.2  CDS  gene_syn NTMC2T5.2, NTMC2TYPE5.2  gene NTMC2T5.2  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NTMC2T5.2  note NTMC2T5.2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: NTMC2T5.1 (N-TERMINAL-TRANSMEMBRANE-C2 DOMAIN TYPE 5.1) (TAIR:AT1G50260.1).  protein_id AT3G19830.2p  transcript_id AT3G19830.2  protein_id AT3G19830.2p  transcript_id AT3G19830.2  
At3g19840	chr3:006891850	0.0	W/6891850-6892288,6892411-6892541,6893082-6893119,6893357-6893861,6894173-6894256,6894857-6894997,6895128-6895234,6895493-6895613,6895848-6895988,6896395-6896541,6896667-6896789,6896973-6897227	AT3G19840.1  CDS  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product FF domain-containing protein / WW domain-containing protein  note FF domain-containing protein / WW domain-containing protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FF (InterPro:IPR002713), WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis thaliana protein match is: protein binding (TAIR:AT1G44910.2); Has 6807 Blast hits to 5122 proteins in 338 species: Archae - 15; Bacteria - 265; Metazoa - 3466; Fungi - 821; Plants - 326; Viruses - 6; Other Eukaryotes - 1908 (source: NCBI BLink).  protein_id AT3G19840.1p  transcript_id AT3G19840.1  protein_id AT3G19840.1p  transcript_id AT3G19840.1  
At3g19850	chr3:006901095	0.0	C/6901095-6901157,6899819-6900997,6898383-6898805	AT3G19850.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process response to light stimulus|GO:0009416||IEA  go_function signal transducer activity|GO:0004871||IEA  go_function protein binding|GO:0005515||IEA  go_process response to light stimulus|GO:0009416||ISS  go_function signal transducer activity|GO:0004871||ISS  product phototropic-responsive NPH3 family protein  note phototropic-responsive NPH3 family protein; FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: phototropic-responsive NPH3 family protein (TAIR:AT1G50280.1); Has 394 Blast hits to 386 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 394; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G19850.1p  transcript_id AT3G19850.1  protein_id AT3G19850.1p  transcript_id AT3G19850.1  
At3g19860	chr3:006903842	0.0	W/6903842-6903989,6904568-6904675,6904757-6904884,6905145-6905606,6905696-6905863	AT3G19860.2  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT4G36060.1); Has 639 Blast hits to 633 proteins in 109 species: Archae - 0; Bacteria - 14; Metazoa - 145; Fungi - 21; Plants - 396; Viruses - 8; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT3G19860.2p  transcript_id AT3G19860.2  protein_id AT3G19860.2p  transcript_id AT3G19860.2  
At3g19860	chr3:006904579	0.0	W/6904579-6904675,6904757-6904884,6905145-6905606,6905696-6905863	AT3G19860.1  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT4G36060.2); Has 569 Blast hits to 563 proteins in 98 species: Archae - 0; Bacteria - 10; Metazoa - 107; Fungi - 16; Plants - 392; Viruses - 6; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT3G19860.1p  transcript_id AT3G19860.1  protein_id AT3G19860.1p  transcript_id AT3G19860.1  
At3g19870	chr3:006907481	0.0	W/6907481-6908908,6909100-6909539,6909630-6911115	AT3G19870.1  CDS  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 49 Blast hits to 40 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT3G19870.1p  transcript_id AT3G19870.1  protein_id AT3G19870.1p  transcript_id AT3G19870.1  
At3g19880	chr3:006911435	0.0	C/6911435-6912604	AT3G19880.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G05080.1); Has 526 Blast hits to 497 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 526; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G19880.1p  transcript_id AT3G19880.1  protein_id AT3G19880.1p  transcript_id AT3G19880.1  
At3g19890	chr3:006914910	0.0	C/6914910-6916142	AT3G19890.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, trichome; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G32140.1); Has 521 Blast hits to 500 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 521; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G19890.1p  transcript_id AT3G19890.1  protein_id AT3G19890.1p  transcript_id AT3G19890.1  
At3g19895	chr3:006920790	0.0	C/6920790-6921211,6920517-6920633,6920224-6920416,6919805-6919971,6919506-6919680,6919069-6919130,6918601-6918682,6918440-6918497,6918194-6918300,6917937-6918020,6917773-6917843,6917530-6917656	AT3G19895.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12940.1); Has 71 Blast hits to 71 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 60; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT3G19895.1p  transcript_id AT3G19895.1  protein_id AT3G19895.1p  transcript_id AT3G19895.1  
At3g19900	chr3:006924282	0.0	C/6924282-6924557,6923748-6923882,6923455-6923511,6923061-6923195,6922852-6922917	AT3G19900.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 218 Blast hits to 218 proteins in 62 species: Archae - 0; Bacteria - 94; Metazoa - 0; Fungi - 2; Plants - 24; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT3G19900.1p  transcript_id AT3G19900.1  protein_id AT3G19900.1p  transcript_id AT3G19900.1  
At3g19910	chr3:006926497	0.0	W/6926497-6926817,6927024-6927357,6927448-6927488,6928211-6928252,6928455-6928576,6928665-6928773,6929271-6929324	AT3G19910.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: BB (BIG BROTHER); protein binding / ubiquitin-protein ligase/ zinc ion binding (TAIR:AT3G63530.2); Has 12471 Blast hits to 9694 proteins in 347 species: Archae - 2; Bacteria - 524; Metazoa - 4423; Fungi - 1242; Plants - 2787; Viruses - 179; Other Eukaryotes - 3314 (source: NCBI BLink).  protein_id AT3G19910.1p  transcript_id AT3G19910.1  protein_id AT3G19910.1p  transcript_id AT3G19910.1  
At3g19920	chr3:006931584	0.0	C/6931584-6931771,6931277-6931460,6930275-6930842,6929840-6930150	AT3G19920.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64230.1); Has 113 Blast hits to 113 proteins in 8 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 111; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G19920.1p  transcript_id AT3G19920.1  protein_id AT3G19920.1p  transcript_id AT3G19920.1  
At3g19930	chr3:006935048	0.0	W/6935048-6935180,6935267-6935586,6935668-6936297,6936380-6936841	AT3G19930.1  CDS  gene_syn ATSTP4, STP4, SUGAR TRANSPORTER 4  gene STP4  function Encodes a sucrose hydrogen symporter that is induced by wounding.  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component integral to plasma membrane|GO:0005887|8989877|ISS  go_component membrane|GO:0016020||ISS  go_process response to wounding|GO:0009611|8989877|IEP  go_process sucrose transport|GO:0015770|8989877|TAS  go_process defense response to fungus|GO:0050832|8989877|IEP  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function sucrose:hydrogen symporter activity|GO:0008506|8989877|IDA  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  go_function monosaccharide transmembrane transporter activity|GO:0015145|8989877|IDA  product STP4 (SUGAR TRANSPORTER 4); carbohydrate transmembrane transporter/ monosaccharide transmembrane transporter/ sucrose:hydrogen symporter/ sugar:hydrogen symporter  note SUGAR TRANSPORTER 4 (STP4); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, sucrose:hydrogen symporter activity, monosaccharide transmembrane transporter activity; INVOLVED IN: defense response to fungus, response to wounding, sucrose transport; LOCATED IN: plasma membrane, integral to plasma membrane, membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter, putative (TAIR:AT3G19940.1); Has 18531 Blast hits to 18180 proteins in 1178 species: Archae - 254; Bacteria - 7380; Metazoa - 3703; Fungi - 4676; Plants - 1458; Viruses - 2; Other Eukaryotes - 1058 (source: NCBI BLink).  protein_id AT3G19930.1p  transcript_id AT3G19930.1  protein_id AT3G19930.1p  transcript_id AT3G19930.1  
At3g19940	chr3:006938211	0.0	W/6938211-6938672,6938757-6939383,6939520-6939975	AT3G19940.1  CDS  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product sugar transporter, putative  note sugar transporter, putative; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: STP9 (SUGAR TRANSPORTER 9); carbohydrate transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT1G50310.1); Has 18991 Blast hits to 18648 proteins in 1188 species: Archae - 256; Bacteria - 7955; Metazoa - 3871; Fungi - 4434; Plants - 1335; Viruses - 0; Other Eukaryotes - 1140 (source: NCBI BLink).  protein_id AT3G19940.1p  transcript_id AT3G19940.1  protein_id AT3G19940.1p  transcript_id AT3G19940.1  
At3g19950	chr3:006942853	0.0	W/6942853-6943839	AT3G19950.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G55530.1); Has 7591 Blast hits to 7571 proteins in 232 species: Archae - 0; Bacteria - 6; Metazoa - 2575; Fungi - 757; Plants - 2818; Viruses - 60; Other Eukaryotes - 1375 (source: NCBI BLink).  protein_id AT3G19950.1p  transcript_id AT3G19950.1  protein_id AT3G19950.1p  transcript_id AT3G19950.1  
At3g19960	chr3:006949787	0.0	W/6949787-6950125,6950263-6950364,6950447-6950590,6950715-6950865,6950975-6951002,6951104-6951132,6951231-6951415,6951530-6951593,6951697-6951710,6951812-6951896,6952273-6952376,6952478-6952616,6952912-6953030,6953357-6953509,6953707-6953796,6953933-6954010,6954171-6954329,6954452-6954658,6954887-6955033,6955119-6955152,6955236-6955315,6955393-6955522,6955635-6955781,6955886-6955953,6956065-6956736	AT3G19960.2  CDS  gene_syn ARABIDOPSIS THALIANA MYOSIN 1, ATM1, MYOSIN  gene ATM1  function member of Myosin-like proteins  go_component cell plate|GO:0009504|15469496|IDA  go_component phragmoplast|GO:0009524|15469496|IDA  go_component myosin complex|GO:0016459||ISS  go_process actin filament-based movement|GO:0030048|11516337|TAS  go_function motor activity|GO:0003774|11516337|ISS  go_function motor activity|GO:0003774||ISS  product ATM1 (ARABIDOPSIS THALIANA MYOSIN 1); motor  note ARABIDOPSIS THALIANA MYOSIN 1 (ATM1); FUNCTIONS IN: motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: myosin complex, phragmoplast, cell plate; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Myosin head, motor region (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: VIIIA; motor (TAIR:AT1G50360.1).  protein_id AT3G19960.2p  transcript_id AT3G19960.2  protein_id AT3G19960.2p  transcript_id AT3G19960.2  
At3g19960	chr3:006949787	0.0	W/6949787-6950125,6950263-6950364,6950447-6950590,6950715-6950865,6950975-6951002,6951250-6951415,6951530-6951593,6951697-6951710,6951812-6951896,6952273-6952376,6952478-6952616,6952912-6953030,6953357-6953509,6953707-6953796,6953933-6954010,6954171-6954329,6954452-6954658,6954887-6955092,6955180-6955315,6955393-6955522,6955635-6955781,6955886-6955953,6956065-6956736	AT3G19960.1  CDS  gene_syn ARABIDOPSIS THALIANA MYOSIN 1, ATM1, MYOSIN  gene ATM1  function member of Myosin-like proteins  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cell plate|GO:0009504|15469496|IDA  go_component phragmoplast|GO:0009524|15469496|IDA  go_component myosin complex|GO:0016459||ISS  go_process actin filament-based movement|GO:0030048|11516337|TAS  go_function motor activity|GO:0003774|11516337|ISS  go_function motor activity|GO:0003774||ISS  product ATM1 (ARABIDOPSIS THALIANA MYOSIN 1); motor  note ARABIDOPSIS THALIANA MYOSIN 1 (ATM1); FUNCTIONS IN: motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: plasma membrane, myosin complex, phragmoplast, cell plate; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Myosin head, motor region (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: VIIIA; motor (TAIR:AT1G50360.1); Has 6021 Blast hits to 5322 proteins in 481 species: Archae - 2; Bacteria - 17; Metazoa - 4239; Fungi - 503; Plants - 380; Viruses - 1; Other Eukaryotes - 879 (source: NCBI BLink).  protein_id AT3G19960.1p  transcript_id AT3G19960.1  protein_id AT3G19960.1p  transcript_id AT3G19960.1  
At3g19970	chr3:006959644	0.0	W/6959644-6960380,6960469-6960574,6960746-6960936,6961097-6961367	AT3G19970.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF829, eukaryotic (InterPro:IPR008547); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G18245.1); Has 287 Blast hits to 287 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 165; Fungi - 47; Plants - 54; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT3G19970.1p  transcript_id AT3G19970.1  protein_id AT3G19970.1p  transcript_id AT3G19970.1  
At3g19980	chr3:006962008	0.0	W/6962008-6962088,6962375-6962521,6962609-6962676,6962918-6962975,6963464-6963574,6963658-6963708,6963814-6963957,6964048-6964143,6964237-6964308,6964678-6964761	AT3G19980.1  CDS  gene_syn ATFYPP3, EMB2736, EMBRYO DEFECTIVE 2736, FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3, SERINE/THREONINE PROTEIN PHOSPHATASE, STPP  gene ATFYPP3  function Encodes catalytic subunit of serine/threonine protein phosphatase 2A. It can associate with phytochromes A and B in vitro. Mutant plants display an accelerated flowering phenotype.  go_component protein phosphatase type 2A complex|GO:0000159|12468726|TAS  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process negative regulation of flower development|GO:0009910|12468726|IMP  go_function protein serine/threonine kinase activity|GO:0004674|12468726|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  go_function protein binding|GO:0005515|12468726|IDA  product ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3); protein binding / protein serine/threonine kinase/ protein serine/threonine phosphatase  note FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3 (ATFYPP3); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein serine/threonine phosphatase activity; INVOLVED IN: embryonic development ending in seed dormancy, negative regulation of flower development; LOCATED IN: nucleus, protein phosphatase type 2A complex, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: serine/threonine protein phosphatase, putative (TAIR:AT1G50370.1); Has 5299 Blast hits to 5198 proteins in 372 species: Archae - 51; Bacteria - 168; Metazoa - 2016; Fungi - 930; Plants - 608; Viruses - 7; Other Eukaryotes - 1519 (source: NCBI BLink).  protein_id AT3G19980.1p  transcript_id AT3G19980.1  protein_id AT3G19980.1p  transcript_id AT3G19980.1  
At3g19990	chr3:006965671	0.0	W/6965671-6966579,6966734-6967102	AT3G19990.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 76 Blast hits to 76 proteins in 25 species: Archae - 0; Bacteria - 28; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT3G19990.1p  transcript_id AT3G19990.1  protein_id AT3G19990.1p  transcript_id AT3G19990.1  
At3g20000	chr3:006967685	0.0	W/6967685-6967811,6968309-6968390,6968475-6968577,6968657-6968752,6968861-6968911,6969024-6969089,6969420-6969521,6969655-6969723,6969822-6969905,6970012-6970107,6970194-6970247	AT3G20000.1  CDS  gene_syn TOM40, TRANSLOCASE OF THE OUTER MITOCHONDRIAL MEMBRANE 40  gene TOM40  function Encodes a component of the TOM receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. With TOM22, functions as the transit peptide receptor at the surface of the mitochondrial outer membrane and facilitates the movement of preproteins into the translocation pore.  go_component mitochondrion|GO:0005739|15276431|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|14730085|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component mitochondrial outer membrane|GO:0005741|14730085|IDA  go_component mitochondrial outer membrane translocase complex|GO:0005742|11161051|IPI  go_component mitochondrial inner membrane|GO:0005743|14730085|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process protein targeting to mitochondrion|GO:0006626|11161051|ISS  go_process anion transport|GO:0006820||ISS  go_function voltage-gated anion channel activity|GO:0008308||ISS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450|11161051|ISS  product TOM40; P-P-bond-hydrolysis-driven protein transmembrane transporter/ voltage-gated anion channel  note TOM40; FUNCTIONS IN: voltage-gated anion channel activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein targeting to mitochondrion, anion transport; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Porin, eukaryotic type (InterPro:IPR001925); BEST Arabidopsis thaliana protein match is: porin family protein (TAIR:AT1G50400.1); Has 401 Blast hits to 401 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 229; Fungi - 95; Plants - 32; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT3G20000.1p  transcript_id AT3G20000.1  protein_id AT3G20000.1p  transcript_id AT3G20000.1  
At3g20010	chr3:006971352	0.0	W/6971352-6971457,6971563-6972239,6972768-6972839,6972914-6972991,6973090-6974068,6974451-6974581,6974826-6975047,6975171-6975734,6975860-6976069,6976236-6976340	AT3G20010.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function DNA binding|GO:0003677||ISS  go_function helicase activity|GO:0004386||ISS  go_function protein binding|GO:0005515||ISS  go_function ATP binding|GO:0005524||ISS  go_function zinc ion binding|GO:0008270||ISS  product SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein  note SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; FUNCTIONS IN: in 6 functions; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein (TAIR:AT1G50410.1); Has 16548 Blast hits to 10382 proteins in 1054 species: Archae - 56; Bacteria - 4060; Metazoa - 4770; Fungi - 3465; Plants - 1188; Viruses - 139; Other Eukaryotes - 2870 (source: NCBI BLink).  protein_id AT3G20010.1p  transcript_id AT3G20010.1  protein_id AT3G20010.1p  transcript_id AT3G20010.1  
At3g20015	chr3:006978746	0.0	C/6978746-6980158	AT3G20015.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartic-type endopeptidase  note aspartic-type endopeptidase; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT3G18490.1); Has 2556 Blast hits to 2540 proteins in 243 species: Archae - 0; Bacteria - 0; Metazoa - 850; Fungi - 401; Plants - 1179; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink).  protein_id AT3G20015.1p  transcript_id AT3G20015.1  protein_id AT3G20015.1p  transcript_id AT3G20015.1  
At3g20020	chr3:006987652	0.0	C/6987652-6987945,6987441-6987506,6987200-6987268,6987013-6987048,6986004-6986072,6985801-6985878,6985618-6985696,6985065-6985159,6984821-6984905,6984509-6984717,6984174-6984292,6984055-6984097	AT3G20020.2  CDS  gene_syn ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, ATPRMT6, PRMT6, PROTEIN ARGININE METHYLTRANSFERASE 6  gene PRMT6  go_component cytoplasm|GO:0005737||IEA  go_process protein amino acid methylation|GO:0006479||IEA  go_function protein methyltransferase activity|GO:0008276||IEA  go_function methyltransferase activity|GO:0008168||ISS  product PRMT6 (PROTEIN ARGININE METHYLTRANSFERASE 6); methyltransferase/ protein methyltransferase  note PROTEIN ARGININE METHYLTRANSFERASE 6 (PRMT6); FUNCTIONS IN: protein methyltransferase activity, methyltransferase activity; INVOLVED IN: protein amino acid methylation; LOCATED IN: cytoplasm; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal L11 methyltransferase (InterPro:IPR010456); BEST Arabidopsis thaliana protein match is: PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A); protein-arginine N-methyltransferase (TAIR:AT2G19670.1); Has 1790 Blast hits to 1776 proteins in 402 species: Archae - 26; Bacteria - 384; Metazoa - 823; Fungi - 168; Plants - 144; Viruses - 0; Other Eukaryotes - 245 (source: NCBI BLink).  protein_id AT3G20020.2p  transcript_id AT3G20020.2  protein_id AT3G20020.2p  transcript_id AT3G20020.2  
At3g20020	chr3:006987652	0.0	C/6987652-6987945,6987441-6987506,6987200-6987268,6987013-6987048,6986337-6986402,6986004-6986072,6985801-6985878,6985618-6985696,6985065-6985159,6984821-6984905,6984509-6984717,6984174-6984292,6984055-6984097	AT3G20020.1  CDS  gene_syn ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, ATPRMT6, PRMT6, PROTEIN ARGININE METHYLTRANSFERASE 6  gene PRMT6  go_process metabolic process|GO:0008152||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_function methyltransferase activity|GO:0008168||ISS  product PRMT6 (PROTEIN ARGININE METHYLTRANSFERASE 6); methyltransferase  note PROTEIN ARGININE METHYLTRANSFERASE 6 (PRMT6); FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A); protein-arginine N-methyltransferase (TAIR:AT2G19670.1); Has 3635 Blast hits to 3579 proteins in 972 species: Archae - 81; Bacteria - 1747; Metazoa - 1005; Fungi - 174; Plants - 198; Viruses - 0; Other Eukaryotes - 430 (source: NCBI BLink).  protein_id AT3G20020.1p  transcript_id AT3G20020.1  protein_id AT3G20020.1p  transcript_id AT3G20020.1  
At3g20030	chr3:006990254	0.0	W/6990254-6991462	AT3G20030.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G60560.1); Has 659 Blast hits to 637 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 657; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G20030.1p  transcript_id AT3G20030.1  protein_id AT3G20030.1p  transcript_id AT3G20030.1  
At3g20040	chr3:006995317	0.0	W/6995317-6995588,6995787-6995937,6996035-6996217,6996456-6996530,6996727-6996882,6997011-6997109,6997207-6997334,6997523-6997601,6997699-6998064	AT3G20040.1  CDS  gene_syn ATHXK4, HEXOKINASE-LIKE 2, HKL2  gene ATHXK4  go_process glycolysis|GO:0006096||IEA  go_process anaerobic glycolysis|GO:0019642||IEA  go_process glucose catabolic process to butanediol|GO:0019650||IEA  go_process glucose catabolic process to D-lactate and ethanol|GO:0019656||IEA  go_process glucose catabolic process to lactate and acetate|GO:0019658||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|18481082|IDA  go_function glucokinase activity|GO:0004340|18481082|IDA  go_function hexokinase activity|GO:0004396||ISS  go_function ATP binding|GO:0005524||ISS  go_function fructokinase activity|GO:0008865|18481082|IDA  product ATHXK4; ATP binding / fructokinase/ glucokinase/ hexokinase  note ATHXK4; FUNCTIONS IN: hexokinase activity, fructokinase activity, glucokinase activity, ATP binding; INVOLVED IN: glucose catabolic process to butanediol, glucose catabolic process to lactate and acetate, glycolysis, anaerobic glycolysis, glucose catabolic process to D-lactate and ethanol; LOCATED IN: mitochondrion; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Hexokinase (InterPro:IPR001312); BEST Arabidopsis thaliana protein match is: HKL1 (HEXOKINASE-LIKE 1); ATP binding / fructokinase/ glucokinase/ hexokinase (TAIR:AT1G50460.1); Has 1758 Blast hits to 1520 proteins in 231 species: Archae - 0; Bacteria - 30; Metazoa - 1023; Fungi - 390; Plants - 200; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).  protein_id AT3G20040.1p  transcript_id AT3G20040.1  protein_id AT3G20040.1p  transcript_id AT3G20040.1  
At3g20050	chr3:007002194	0.0	C/7002194-7002266,7001952-7002016,7001650-7001739,7001451-7001537,7001283-7001342,7001146-7001196,7000898-7000993,7000645-7000710,7000332-7000549,6999990-7000086,6999776-6999862,6999562-6999696,6999302-6999406,6999088-6999216,6998900-6999003,6998715-6998805,6998544-6998627	AT3G20050.1  CDS  gene_syn ARABIDOPSIS THALIANA T-COMPLEX PROTEIN 1 ALPHA SUBUNIT, ATTCP-1  gene ATTCP-1  function Encodes a putative cytoplasmic chaperonin that is similar to mouse Tcp-1 (t complex polypeptide 1).  go_process protein folding|GO:0006457||IEA  go_process cellular protein metabolic process|GO:0044267||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  product ATTCP-1; ATP binding / protein binding / unfolded protein binding  note ATTCP-1; FUNCTIONS IN: unfolded protein binding, protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin TCP-1, conserved site (InterPro:IPR002194), Chaperonin Cpn60 (InterPro:IPR001844), T-complex protein 1, alpha subunit (InterPro:IPR012715); BEST Arabidopsis thaliana protein match is: chaperonin, putative (TAIR:AT3G11830.1); Has 12444 Blast hits to 12406 proteins in 2232 species: Archae - 394; Bacteria - 5005; Metazoa - 1893; Fungi - 933; Plants - 446; Viruses - 0; Other Eukaryotes - 3773 (source: NCBI BLink).  protein_id AT3G20050.1p  transcript_id AT3G20050.1  protein_id AT3G20050.1p  transcript_id AT3G20050.1  
At3g20060	chr3:007003716	0.0	C/7003716-7003727,7003405-7003632,7003233-7003296,7003071-7003130,7002927-7002973	AT3G20060.2  CDS  gene_syn UBC19, ubiquitin-conjugating enzyme19  gene UBC19  function Encodes one of two ubiquitin-conjugating enzymes belonging to the E2-C gene family (the other being UBC19). Transcript is always found in dividing cells, but also in other non-dividing cells. Protein is localized to the cytoplasm as well as to the nucleus.  go_component nucleus|GO:0005634|12427990|IDA  go_component cytoplasm|GO:0005737|12427990|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_process cell proliferation|GO:0008283|12427990|IEP  go_function ubiquitin-protein ligase activity|GO:0004842|12427990|ISS  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC19 (ubiquitin-conjugating enzyme19); ubiquitin-protein ligase  note ubiquitin-conjugating enzyme19 (UBC19); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: cell proliferation, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme E2 H10 (InterPro:IPR015582), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC20 (ubiquitin-conjugating enzyme 20); ubiquitin-protein ligase (TAIR:AT1G50490.1); Has 6982 Blast hits to 6974 proteins in 302 species: Archae - 0; Bacteria - 0; Metazoa - 3388; Fungi - 1327; Plants - 1027; Viruses - 16; Other Eukaryotes - 1224 (source: NCBI BLink).  protein_id AT3G20060.2p  transcript_id AT3G20060.2  protein_id AT3G20060.2p  transcript_id AT3G20060.2  
At3g20060	chr3:007004165	0.0	C/7004165-7004283,7003716-7003743,7003405-7003632,7003233-7003296,7003071-7003130,7002927-7002973	AT3G20060.1  CDS  gene_syn UBC19, ubiquitin-conjugating enzyme19  gene UBC19  function Encodes one of two ubiquitin-conjugating enzymes belonging to the E2-C gene family (the other being UBC19). Transcript is always found in dividing cells, but also in other non-dividing cells. Protein is localized to the cytoplasm as well as to the nucleus.  go_component nucleus|GO:0005634|12427990|IDA  go_component cytoplasm|GO:0005737|12427990|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_process cell proliferation|GO:0008283|12427990|IEP  go_function ubiquitin-protein ligase activity|GO:0004842|12427990|ISS  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC19 (ubiquitin-conjugating enzyme19); ubiquitin-protein ligase  note ubiquitin-conjugating enzyme19 (UBC19); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: cell proliferation, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme E2 H10 (InterPro:IPR015582), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC20 (ubiquitin-conjugating enzyme 20); ubiquitin-protein ligase (TAIR:AT1G50490.1); Has 7103 Blast hits to 7095 proteins in 303 species: Archae - 0; Bacteria - 0; Metazoa - 3418; Fungi - 1355; Plants - 1062; Viruses - 16; Other Eukaryotes - 1252 (source: NCBI BLink).  protein_id AT3G20060.1p  transcript_id AT3G20060.1  protein_id AT3G20060.1p  transcript_id AT3G20060.1  
At3g20070	chr3:007006578	0.0	C/7006578-7006625,7006402-7006471,7006117-7006207,7005955-7006016,7005546-7005763,7005258-7005426,7004950-7005140	AT3G20070.1  CDS  gene_syn TITAN9, TTN9  gene TTN9  function Encodes a plant-specific protein of unknown function. Mutant embryos contain at most four small cells. The endosperm nucleoli are enlarged. Gene is expressed in siliques based on EST information.  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793|11788751|IMP  go_process endosperm development|GO:0009960|11788751|IMP  go_function molecular_function|GO:0003674||ND  product TTN9 (TITAN9)  note TITAN9 (TTN9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy, endosperm development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; Has 223 Blast hits to 189 proteins in 53 species: Archae - 0; Bacteria - 50; Metazoa - 54; Fungi - 6; Plants - 21; Viruses - 2; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT3G20070.1p  transcript_id AT3G20070.1  protein_id AT3G20070.1p  transcript_id AT3G20070.1  
At3g20070	chr3:007006578	0.0	C/7006578-7006625,7006402-7006471,7006117-7006207,7005955-7006016,7005546-7005763,7005258-7005426,7004950-7005140	AT3G20070.2  CDS  gene_syn TITAN9, TTN9  gene TTN9  function Encodes a plant-specific protein of unknown function. Mutant embryos contain at most four small cells. The endosperm nucleoli are enlarged. Gene is expressed in siliques based on EST information.  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793|11788751|IMP  go_process endosperm development|GO:0009960|11788751|IMP  go_function molecular_function|GO:0003674||ND  product TTN9 (TITAN9)  note TITAN9 (TTN9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy, endosperm development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; Has 223 Blast hits to 189 proteins in 53 species: Archae - 0; Bacteria - 50; Metazoa - 54; Fungi - 6; Plants - 21; Viruses - 2; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT3G20070.2p  transcript_id AT3G20070.2  protein_id AT3G20070.2p  transcript_id AT3G20070.2  
At3g20075	chr3:007007316	0.0	W/7007316-7007653	AT3G20075.1  pseudogenic_transcript  pseudo  gene_syn CYP705A14P, MAL21.1  gene CYP705A14P  function a pseudogene with cytochrome P450 domain  note pseudogene, cytochrome P450 (fragment), blastp match of 47% identity and 1.1e-15 P-value to SP|Q42799|C932_SOYBN Cytochrome P450 93A2 (EC 1.14.-.-). (Soybean) {Glycine max}  
At3g20080	chr3:007008813	0.0	W/7008813-7009733,7009813-7010463	AT3G20080.1  CDS  gene_syn CYP705A15, CYTOCHROME P450, FAMILY 705, SUBFAMILY A, POLYPEPTIDE 15  gene CYP705A15  function member of CYP705A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP705A15; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP705A15; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP705A4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G15380.1); Has 23248 Blast hits to 23126 proteins in 1238 species: Archae - 23; Bacteria - 2125; Metazoa - 10156; Fungi - 4484; Plants - 5586; Viruses - 6; Other Eukaryotes - 868 (source: NCBI BLink).  protein_id AT3G20080.1p  transcript_id AT3G20080.1  protein_id AT3G20080.1p  transcript_id AT3G20080.1  
At3g20080	chr3:007008813	0.0	W/7008813-7009733,7009813-7010463	AT3G20080.2  CDS  gene_syn CYP705A15, CYTOCHROME P450, FAMILY 705, SUBFAMILY A, POLYPEPTIDE 15  gene CYP705A15  function member of CYP705A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP705A15; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP705A15; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP705A4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G15380.1); Has 23248 Blast hits to 23126 proteins in 1238 species: Archae - 23; Bacteria - 2125; Metazoa - 10156; Fungi - 4484; Plants - 5586; Viruses - 6; Other Eukaryotes - 868 (source: NCBI BLink).  protein_id AT3G20080.2p  transcript_id AT3G20080.2  protein_id AT3G20080.2p  transcript_id AT3G20080.2  
At3g20080	chr3:007009224	0.0	W/7009224-7009733,7009813-7010463	AT3G20080.3  CDS  gene_syn CYP705A15, CYTOCHROME P450, FAMILY 705, SUBFAMILY A, POLYPEPTIDE 15  gene CYP705A15  function member of CYP705A  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP705A15; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP705A15; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP705A4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G15380.1); Has 22830 Blast hits to 22792 proteins in 1235 species: Archae - 23; Bacteria - 2123; Metazoa - 10094; Fungi - 4457; Plants - 5261; Viruses - 6; Other Eukaryotes - 866 (source: NCBI BLink).  protein_id AT3G20080.3p  transcript_id AT3G20080.3  protein_id AT3G20080.3p  transcript_id AT3G20080.3  
At3g20083	chr3:007011940	0.0	W/7011940-7013625	AT3G20083.1  pseudogenic_transcript  pseudo  gene_syn CYP705A16, MAL21.10  gene CYP705A16  function a member of A-type cytochrome P450  note pseudogene, cytochrome P450, blastp match of 45% identity and 6.0e-77 P-value to SP|O81973|C933_SOYBN Cytochrome P450 93A3 (EC 1.14.-.-) (P450 CP5). (Soybean) {Glycine max}  
At3g20085	chr3:007014165	0.0	W/7014165-7014340	AT3G20085.1  mRNA_TE_gene  pseudo  gene_syn MAL21.28  function similarity to Retrotransposon - like protein (Copia-like retroelement pol polyprotein-like).  note Transposable element gene, pseudogene, expressed protein  
At3g20087	chr3:007014522	0.0	W/7014522-7015284	AT3G20087.1  pseudogenic_transcript  pseudo  gene_syn CYP705A17P, MAL21.11  gene CYP705A17P  function a cytochrome P450 pseudogene  note pseudogene, cytochrome P450, blastp match of 40% identity and 1.3e-29 P-value to GP|6118407|gb|AAF04115.1|AF188612_1|AF188612 flavone synthase II {Callistephus chinensis}  
At3g20090	chr3:007017046	0.0	W/7017046-7017555,7017637-7018287	AT3G20090.1  CDS  gene_syn CYP705A18, CYTOCHROME P450, FAMILY 705, SUBFAMILY A, POLYPEPTIDE 18  gene CYP705A18  function member of CYP705A  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function oxygen binding|GO:0019825||ISS  product CYP705A18; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP705A18; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, sperm cell, embryo, hypocotyl, root; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP705A33; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G20960.1); Has 22660 Blast hits to 22619 proteins in 1225 species: Archae - 23; Bacteria - 1988; Metazoa - 10078; Fungi - 4433; Plants - 5287; Viruses - 3; Other Eukaryotes - 848 (source: NCBI BLink).  protein_id AT3G20090.1p  transcript_id AT3G20090.1  protein_id AT3G20090.1p  transcript_id AT3G20090.1  
At3g20100	chr3:007019014	0.0	W/7019014-7019931,7020026-7020649	AT3G20100.1  CDS  gene_syn CYP705A19, CYTOCHROME P450, FAMILY 705, SUBFAMILY A, POLYPEPTIDE 19  gene CYP705A19  function member of CYP705A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP705A19; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP705A19; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP705A2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G15350.1); Has 23317 Blast hits to 23174 proteins in 1223 species: Archae - 23; Bacteria - 2119; Metazoa - 10115; Fungi - 4456; Plants - 5627; Viruses - 6; Other Eukaryotes - 971 (source: NCBI BLink).  protein_id AT3G20100.1p  transcript_id AT3G20100.1  protein_id AT3G20100.1p  transcript_id AT3G20100.1  
At3g20110	chr3:007021495	0.0	W/7021495-7022403,7022490-7023113	AT3G20110.1  CDS  gene_syn CYP705A20, CYTOCHROME P450, FAMILY 705, SUBFAMILY A, POLYPEPTIDE 20  gene CYP705A20  function member of CYP705A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP705A20; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP705A20; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP705A19; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G20100.1); Has 24783 Blast hits to 24694 proteins in 1320 species: Archae - 28; Bacteria - 2983; Metazoa - 10210; Fungi - 4494; Plants - 5702; Viruses - 6; Other Eukaryotes - 1360 (source: NCBI BLink).  protein_id AT3G20110.1p  transcript_id AT3G20110.1  protein_id AT3G20110.1p  transcript_id AT3G20110.1  
At3g20120	chr3:007024576	0.0	W/7024576-7025082,7025160-7025789	AT3G20120.1  CDS  gene_syn CYP705A21, CYTOCHROME P450, FAMILY 705, SUBFAMILY A, POLYPEPTIDE 21  gene CYP705A21  function member of CYP705A  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP705A21; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP705A21; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973); BEST Arabidopsis thaliana protein match is: CYP705A20; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G20110.1); Has 23096 Blast hits to 23051 proteins in 1218 species: Archae - 23; Bacteria - 1992; Metazoa - 10253; Fungi - 4518; Plants - 5375; Viruses - 3; Other Eukaryotes - 932 (source: NCBI BLink).  protein_id AT3G20120.1p  transcript_id AT3G20120.1  protein_id AT3G20120.1p  transcript_id AT3G20120.1  
At3g20120	chr3:007024576	0.0	W/7024576-7025082,7025160-7025789	AT3G20120.2  CDS  gene_syn CYP705A21, CYTOCHROME P450, FAMILY 705, SUBFAMILY A, POLYPEPTIDE 21  gene CYP705A21  function member of CYP705A  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP705A21; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP705A21; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP705A20; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G20110.1); Has 23096 Blast hits to 23051 proteins in 1218 species: Archae - 23; Bacteria - 1992; Metazoa - 10253; Fungi - 4518; Plants - 5375; Viruses - 3; Other Eukaryotes - 932 (source: NCBI BLink).  protein_id AT3G20120.2p  transcript_id AT3G20120.2  protein_id AT3G20120.2p  transcript_id AT3G20120.2  
At3g20130	chr3:007026982	0.0	W/7026982-7027199,7027284-7027899,7027984-7028613	AT3G20130.2  CDS  gene_syn CYP705A22, CYTOCHROME P450, FAMILY 705, SUBFAMILY A, POLYPEPTIDE 22  gene CYP705A22  function member of CYP705A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process biological_process|GO:0008150||ND  go_function oxygen binding|GO:0019825||ISS  product CYP705A22; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP705A22; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root, carpel; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP705A19; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G20100.1); Has 22894 Blast hits to 22832 proteins in 1214 species: Archae - 21; Bacteria - 1873; Metazoa - 10220; Fungi - 4503; Plants - 5424; Viruses - 3; Other Eukaryotes - 850 (source: NCBI BLink).  protein_id AT3G20130.2p  transcript_id AT3G20130.2  protein_id AT3G20130.2p  transcript_id AT3G20130.2  
At3g20130	chr3:007026982	0.0	W/7026982-7027899,7027984-7028613	AT3G20130.1  CDS  gene_syn CYP705A22, CYTOCHROME P450, FAMILY 705, SUBFAMILY A, POLYPEPTIDE 22  gene CYP705A22  function member of CYP705A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process biological_process|GO:0008150||ND  go_function oxygen binding|GO:0019825||ISS  product CYP705A22; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP705A22; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root, carpel; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP705A30; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G20940.1); Has 23325 Blast hits to 23174 proteins in 1219 species: Archae - 21; Bacteria - 1873; Metazoa - 10348; Fungi - 4556; Plants - 5667; Viruses - 6; Other Eukaryotes - 854 (source: NCBI BLink).  protein_id AT3G20130.1p  transcript_id AT3G20130.1  protein_id AT3G20130.1p  transcript_id AT3G20130.1  
At3g20140	chr3:007029175	0.0	W/7029175-7030092,7030173-7030787	AT3G20140.1  CDS  gene_syn CYP705A23, CYTOCHROME P450, FAMILY 705, SUBFAMILY A, POLYPEPTIDE 23  gene CYP705A23  function member of CYP705A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP705A23; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP705A23; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP705A2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G15350.1); Has 23725 Blast hits to 23586 proteins in 1268 species: Archae - 23; Bacteria - 2307; Metazoa - 10298; Fungi - 4483; Plants - 5691; Viruses - 6; Other Eukaryotes - 917 (source: NCBI BLink).  protein_id AT3G20140.1p  transcript_id AT3G20140.1  protein_id AT3G20140.1p  transcript_id AT3G20140.1  
At3g20150	chr3:007031412	0.0	W/7031412-7031657,7031757-7031828,7031943-7032068,7032160-7032243,7032336-7032461,7032565-7032624,7032713-7032766,7032856-7032948,7033155-7033250,7033323-7033468,7033601-7033750,7033965-7034094,7034185-7035048,7035143-7035238,7035325-7035417,7035508-7036233,7036317-7036499	AT3G20150.1  CDS  go_component microtubule associated complex|GO:0005875||IEA  go_component chloroplast|GO:0009507||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product kinesin motor family protein  note kinesin motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex, chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin-related (InterPro:IPR010544), Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: KINESIN-12B; microtubule motor/ plus-end-directed microtubule motor (TAIR:AT3G23670.1); Has 29170 Blast hits to 20352 proteins in 800 species: Archae - 213; Bacteria - 1267; Metazoa - 16454; Fungi - 2299; Plants - 1484; Viruses - 54; Other Eukaryotes - 7399 (source: NCBI BLink).  protein_id AT3G20150.1p  transcript_id AT3G20150.1  protein_id AT3G20150.1p  transcript_id AT3G20150.1  
At3g20155	chr3:007037251	0.0	W/7037251-7037268,7037362-7037437,7037536-7037705,7037790-7037865,7037950-7038260	AT3G20155.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 24 Blast hits to 24 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G20155.1p  transcript_id AT3G20155.1  protein_id AT3G20155.1p  transcript_id AT3G20155.1  
At3g20160	chr3:007038995	0.0	W/7038995-7040029	AT3G20160.1  CDS  go_process isoprenoid biosynthetic process|GO:0008299||IEA  go_process isoprenoid biosynthetic process|GO:0008299||ISS  go_function farnesyltranstransferase activity|GO:0004311|9349257|ISS  product geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative  note geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative; FUNCTIONS IN: farnesyltranstransferase activity; INVOLVED IN: isoprenoid biosynthetic process; CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: GGPS6 (geranylgeranyl pyrophosphate synthase 6); farnesyltranstransferase (TAIR:AT1G49530.1); Has 11510 Blast hits to 11506 proteins in 1678 species: Archae - 213; Bacteria - 4913; Metazoa - 226; Fungi - 340; Plants - 292; Viruses - 6; Other Eukaryotes - 5520 (source: NCBI BLink).  protein_id AT3G20160.1p  transcript_id AT3G20160.1  protein_id AT3G20160.1p  transcript_id AT3G20160.1  
At3g20170	chr3:007041780	0.0	W/7041780-7043207	AT3G20170.1  CDS  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product armadillo/beta-catenin repeat family protein  note armadillo/beta-catenin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein / F-box family protein (TAIR:AT2G44900.1); Has 1861 Blast hits to 970 proteins in 152 species: Archae - 4; Bacteria - 25; Metazoa - 359; Fungi - 337; Plants - 997; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).  protein_id AT3G20170.1p  transcript_id AT3G20170.1  protein_id AT3G20170.1p  transcript_id AT3G20170.1  
At3g20180	chr3:007043769	0.0	C/7043769-7043841,7043385-7043668	AT3G20180.1  CDS  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  product metal ion binding  note metal ion binding; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: metal ion binding (TAIR:AT1G55780.1); Has 135 Blast hits to 135 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G20180.1p  transcript_id AT3G20180.1  protein_id AT3G20180.1p  transcript_id AT3G20180.1  
At3g20190	chr3:007044997	0.0	W/7044997-7045723,7045823-7046470,7046548-7047212	AT3G20190.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT1G50610.1); Has 56840 Blast hits to 42251 proteins in 1292 species: Archae - 27; Bacteria - 2158; Metazoa - 15822; Fungi - 2208; Plants - 30310; Viruses - 169; Other Eukaryotes - 6146 (source: NCBI BLink).  protein_id AT3G20190.1p  transcript_id AT3G20190.1  protein_id AT3G20190.1p  transcript_id AT3G20190.1  
At3g20200	chr3:007047895	0.0	W/7047895-7048072,7048174-7048250,7048352-7048473,7048563-7048768,7048853-7048904,7049005-7049368,7049454-7049555,7049642-7050028,7050127-7050888,7050958-7051030,7051126-7051145	AT3G20200.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process response to stress|GO:0006950||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), UspA (InterPro:IPR006016), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G16760.1); Has 81502 Blast hits to 80245 proteins in 3249 species: Archae - 56; Bacteria - 7550; Metazoa - 35586; Fungi - 6165; Plants - 18128; Viruses - 286; Other Eukaryotes - 13731 (source: NCBI BLink).  protein_id AT3G20200.1p  transcript_id AT3G20200.1  protein_id AT3G20200.1p  transcript_id AT3G20200.1  
At3g20210	chr3:007052482	0.0	W/7052482-7052670,7052767-7052931,7053021-7053177,7053271-7053356,7053443-7053642,7053752-7054010,7054088-7054294,7054388-7054525	AT3G20210.1  CDS  gene_syn DELTA VACUOLAR PROCESSING ENZYME, DELTA-VPE, DELTAVPE  gene DELTA-VPE  function Encodes a vacuolar processing enzyme with caspase-1-like activity that is specifically expressed in inner integument of developing seeds. Mutants display abnormal seed coat development. It is speculated to be involved in cell death of limited cell layers, the purpose of which is to form a seed coat.  go_component extracellular space|GO:0005615|15705955|IDA  go_process proteolysis|GO:0006508||ISS  go_process vacuolar protein processing|GO:0006624|14688293|ISS  go_process seed coat development|GO:0010214|15705955|IMP  go_process programmed cell death|GO:0012501|15705955|IMP  go_function cysteine-type endopeptidase activity|GO:0004197|15705955|IDA  go_function cysteine-type endopeptidase activity|GO:0004197||ISS  product DELTA-VPE; cysteine-type endopeptidase  note DELTA-VPE; FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: seed coat development, proteolysis, vacuolar protein processing, programmed cell death; LOCATED IN: extracellular space; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase C13, legumain (InterPro:IPR001096); BEST Arabidopsis thaliana protein match is: GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME); cysteine-type endopeptidase (TAIR:AT4G32940.1); Has 599 Blast hits to 597 proteins in 186 species: Archae - 4; Bacteria - 2; Metazoa - 234; Fungi - 78; Plants - 185; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT3G20210.1p  transcript_id AT3G20210.1  protein_id AT3G20210.1p  transcript_id AT3G20210.1  
At3g20220	chr3:007055060	0.0	W/7055060-7055416	AT3G20220.1  CDS  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive protein, putative  note auxin-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT4G38840.1); Has 616 Blast hits to 608 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 615; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G20220.1p  transcript_id AT3G20220.1  protein_id AT3G20220.1p  transcript_id AT3G20220.1  
At3g20230	chr3:007056515	0.0	C/7056515-7056679,7055639-7056037	AT3G20230.1  CDS  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_component chloroplast|GO:0009507||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 50S ribosomal protein L18 family  note 50S ribosomal protein L18 family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18/L5 (InterPro:IPR005484); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT1G08845.2); Has 911 Blast hits to 911 proteins in 312 species: Archae - 0; Bacteria - 630; Metazoa - 35; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).  protein_id AT3G20230.1p  transcript_id AT3G20230.1  protein_id AT3G20230.1p  transcript_id AT3G20230.1  
At3g20240	chr3:007057192	0.0	W/7057192-7057314,7057523-7057617,7057709-7058042,7058137-7058374,7058460-7058716	AT3G20240.1  CDS  go_component mitochondrial inner membrane|GO:0005743||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function transporter activity|GO:0005215||ISS  go_function binding|GO:0005488||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: transporter activity, binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: SHS1 (SODIUM HYPERSENSITIVE 1); binding / nucleotide transmembrane transporter/ transporter (TAIR:AT4G32400.1); Has 16786 Blast hits to 9647 proteins in 354 species: Archae - 0; Bacteria - 0; Metazoa - 7901; Fungi - 4785; Plants - 2484; Viruses - 0; Other Eukaryotes - 1616 (source: NCBI BLink).  protein_id AT3G20240.1p  transcript_id AT3G20240.1  protein_id AT3G20240.1p  transcript_id AT3G20240.1  
At3g20250	chr3:007062064	0.0	C/7062064-7062660,7060700-7062012,7060441-7060582,7060255-7060362,7059941-7060153,7059748-7059858,7059460-7059654,7059217-7059388,7059098-7059132	AT3G20250.1  CDS  gene_syn APUM5, Arabidopsis Pumilio 5  gene APUM5  go_component vacuole|GO:0005773|15539469|IDA  go_function RNA binding|GO:0003723||IEA  go_function binding|GO:0005488||IEA  go_function RNA binding|GO:0003723||ISS  product APUM5 (Arabidopsis Pumilio 5); RNA binding / binding  note Arabidopsis Pumilio 5 (APUM5); FUNCTIONS IN: RNA binding, binding; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding region (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: APUM6 (Arabidopsis Pumilio 6); RNA binding / binding (TAIR:AT4G25880.1); Has 3518 Blast hits to 1808 proteins in 189 species: Archae - 0; Bacteria - 5; Metazoa - 931; Fungi - 953; Plants - 586; Viruses - 0; Other Eukaryotes - 1043 (source: NCBI BLink).  protein_id AT3G20250.1p  transcript_id AT3G20250.1  protein_id AT3G20250.1p  transcript_id AT3G20250.1  
At3g20260	chr3:007065316	0.0	C/7065316-7065751,7064815-7065231,7064512-7064726,7064190-7064435	AT3G20260.1  CDS  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  product structural constituent of ribosome  note structural constituent of ribosome; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e (InterPro:IPR008195), Protein of unknown function DUF1666 (InterPro:IPR012870); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT1G73850.1); Has 279 Blast hits to 270 proteins in 66 species: Archae - 0; Bacteria - 2; Metazoa - 98; Fungi - 33; Plants - 59; Viruses - 15; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT3G20260.1p  transcript_id AT3G20260.1  protein_id AT3G20260.1p  transcript_id AT3G20260.1  
At3g20270	chr3:007067779	0.0	W/7067779-7068038,7068130-7068281,7068364-7068500,7068575-7068724,7068957-7069394,7069515-7069654,7069736-7070078,7070154-7070402,7070488-7070613,7070693-7070866	AT3G20270.1  CDS  go_function lipid binding|GO:0008289||IEA  go_process biological_process|GO:0008150||ND  go_function lipid binding|GO:0008289||ISS  product lipid-binding serum glycoprotein family protein  note lipid-binding serum glycoprotein family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Bactericidal permeability-increasing protein, alpha/beta domain (InterPro:IPR017943), Lipid-binding serum glycoprotein, N-terminal (InterPro:IPR017942), Lipid-binding serum glycoprotein, C-terminal (InterPro:IPR001124); BEST Arabidopsis thaliana protein match is: lipid-binding serum glycoprotein family protein (TAIR:AT1G04970.1); Has 353 Blast hits to 347 proteins in 49 species: Archae - 2; Bacteria - 0; Metazoa - 298; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT3G20270.1p  transcript_id AT3G20270.1  protein_id AT3G20270.1p  transcript_id AT3G20270.1  
At3g20270	chr3:007068879	0.0	W/7068879-7069394,7069515-7069654,7069736-7070078,7070154-7070402,7070488-7070613,7070693-7070866	AT3G20270.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_function lipid binding|GO:0008289||IEA  go_process biological_process|GO:0008150||ND  go_function lipid binding|GO:0008289||ISS  product lipid-binding serum glycoprotein family protein  note lipid-binding serum glycoprotein family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bactericidal permeability-increasing protein, alpha/beta domain (InterPro:IPR017943), Lipid-binding serum glycoprotein, C-terminal (InterPro:IPR001124), Lipid-binding serum glycoprotein, N-terminal (InterPro:IPR017942); BEST Arabidopsis thaliana protein match is: lipid-binding serum glycoprotein family protein (TAIR:AT1G04970.1); Has 344 Blast hits to 339 proteins in 49 species: Archae - 2; Bacteria - 0; Metazoa - 298; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT3G20270.2p  transcript_id AT3G20270.2  protein_id AT3G20270.2p  transcript_id AT3G20270.2  
At3g20280	chr3:007071475	0.0	W/7071475-7071867,7072006-7072102,7072184-7072306,7072722-7074340	AT3G20280.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product PHD finger family protein  note PHD finger family protein; FUNCTIONS IN: protein binding, DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT1G50620.1); Has 9770 Blast hits to 5029 proteins in 476 species: Archae - 22; Bacteria - 1974; Metazoa - 3487; Fungi - 1858; Plants - 150; Viruses - 195; Other Eukaryotes - 2084 (source: NCBI BLink).  protein_id AT3G20280.1p  transcript_id AT3G20280.1  protein_id AT3G20280.1p  transcript_id AT3G20280.1  
At3g20280	chr3:007072892	0.0	W/7072892-7074340	AT3G20280.2  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product PHD finger family protein  note PHD finger family protein; FUNCTIONS IN: protein binding, DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT1G50620.1); Has 10388 Blast hits to 4989 proteins in 471 species: Archae - 22; Bacteria - 1986; Metazoa - 3506; Fungi - 1868; Plants - 140; Viruses - 202; Other Eukaryotes - 2664 (source: NCBI BLink).  protein_id AT3G20280.2p  transcript_id AT3G20280.2  protein_id AT3G20280.2p  transcript_id AT3G20280.2  
At3g20290	chr3:007078571	0.0	C/7078571-7078655,7078387-7078466,7078011-7078079,7077871-7077928,7077671-7077726,7077549-7077591,7077409-7077470,7077091-7077204,7076877-7076979,7076692-7076741,7076347-7076475,7075997-7076248,7075797-7075876,7075565-7075691,7075349-7075492,7075057-7075242	AT3G20290.1  CDS  gene_syn ATEHD1, EPS15 HOMOLOGY DOMAIN 1  gene ATEHD1  function Encodes AtEHD1, one of the Arabidopsis Eps15 homology domain proteins involved in endocytosis (AtEHD2, At4g05520).  go_function GTPase activity|GO:0003924||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function GTP binding|GO:0005525||IEA  go_component cytoplasm|GO:0005737|18547399|IDA  go_component endosome|GO:0005768|18547399|IDA  go_component microsome|GO:0005792|18547399|IDA  go_component membrane|GO:0016020|18547399|IDA  go_process endocytosis|GO:0006897|18547399|IMP  go_function calcium ion binding|GO:0005509||ISS  product ATEHD1 (EPS15 HOMOLOGY DOMAIN 1); GTP binding / GTPase/ calcium ion binding  note EPS15 HOMOLOGY DOMAIN 1 (ATEHD1); FUNCTIONS IN: GTP binding, GTPase activity, calcium ion binding; INVOLVED IN: endocytosis; LOCATED IN: endosome, microsome, membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EPS15 homology (EH) (InterPro:IPR000261), Dynamin, GTPase region (InterPro:IPR001401), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: ATEHD2 (EPS15 HOMOLOGY DOMAIN 2); GTP binding / GTPase/ calcium ion binding (TAIR:AT4G05520.1); Has 2133 Blast hits to 1415 proteins in 190 species: Archae - 0; Bacteria - 44; Metazoa - 1401; Fungi - 361; Plants - 110; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).  protein_id AT3G20290.1p  transcript_id AT3G20290.1  protein_id AT3G20290.1p  transcript_id AT3G20290.1  
At3g20290	chr3:007078571	0.0	C/7078571-7078655,7078387-7078466,7078011-7078079,7077871-7077928,7077671-7077726,7077549-7077591,7077409-7077470,7077091-7077204,7076877-7076979,7076692-7076741,7076347-7076475,7075997-7076248,7075797-7075876,7075565-7075691,7075349-7075492,7075057-7075242	AT3G20290.2  CDS  gene_syn ATEHD1, EPS15 HOMOLOGY DOMAIN 1  gene ATEHD1  function Encodes AtEHD1, one of the Arabidopsis Eps15 homology domain proteins involved in endocytosis (AtEHD2, At4g05520).  go_function GTPase activity|GO:0003924||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function GTP binding|GO:0005525||IEA  go_component cytoplasm|GO:0005737|18547399|IDA  go_component endosome|GO:0005768|18547399|IDA  go_component microsome|GO:0005792|18547399|IDA  go_component membrane|GO:0016020|18547399|IDA  go_process endocytosis|GO:0006897|18547399|IMP  go_function calcium ion binding|GO:0005509||ISS  product ATEHD1 (EPS15 HOMOLOGY DOMAIN 1); GTP binding / GTPase/ calcium ion binding  note EPS15 HOMOLOGY DOMAIN 1 (ATEHD1); FUNCTIONS IN: GTP binding, GTPase activity, calcium ion binding; INVOLVED IN: endocytosis; LOCATED IN: endosome, microsome, membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EPS15 homology (EH) (InterPro:IPR000261), Dynamin, GTPase region (InterPro:IPR001401), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: ATEHD2 (EPS15 HOMOLOGY DOMAIN 2); GTP binding / GTPase/ calcium ion binding (TAIR:AT4G05520.1); Has 2133 Blast hits to 1415 proteins in 190 species: Archae - 0; Bacteria - 44; Metazoa - 1401; Fungi - 361; Plants - 110; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).  protein_id AT3G20290.2p  transcript_id AT3G20290.2  protein_id AT3G20290.2p  transcript_id AT3G20290.2  
At3g20300	chr3:007081357	0.0	C/7081357-7081809,7080460-7080909,7080062-7080380,7079832-7079968	AT3G20300.1  CDS  product unknown protein  note unknown protein; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G50630.1); Has 80 Blast hits to 80 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G20300.1p  transcript_id AT3G20300.1  protein_id AT3G20300.1p  transcript_id AT3G20300.1  
At3g20310	chr3:007085957	0.0	C/7085957-7086691	AT3G20310.1  CDS  gene_syn ATERF-7, ATERF7, ERF7, ETHYLINE RESPONSE FACTOR 7  gene ERF7  function Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-7). The protein contains one AP2 domain. Phosphorylated by PKS3 in vitro. Involved in ABA-mediated responses. Acts as a repressor of GCC box mediated transcription together with AtSin3 and HDA19.  go_component nucleus|GO:0005634|11487705|IC  go_component nucleus|GO:0005634|15994908|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|11487705|TAS  go_process response to water deprivation|GO:0009414|15994908|IMP  go_process response to abscisic acid stimulus|GO:0009737|15994908|IMP  go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677|11487705|TAS  go_function DNA binding|GO:0003677|15994908|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11487705|TAS  go_function transcription factor activity|GO:0003700|9687012|TAS  go_function protein binding|GO:0005515|15994908|IPI  go_function transcription repressor activity|GO:0016564|11487705|TAS  go_function transcription repressor activity|GO:0016564|15994908|IEP  product ERF7 (ETHYLINE RESPONSE FACTOR 7); DNA binding / protein binding / transcription factor/ transcription repressor  note ETHYLINE RESPONSE FACTOR 7 (ERF7); FUNCTIONS IN: protein binding, transcription repressor activity, transcription factor activity, DNA binding; INVOLVED IN: ethylene mediated signaling pathway, response to water deprivation, response to abscisic acid stimulus, regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ERF3 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 3); DNA binding / protein binding / transcription factor/ transcription repressor (TAIR:AT1G50640.1); Has 3804 Blast hits to 3650 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3797; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT3G20310.1p  transcript_id AT3G20310.1  protein_id AT3G20310.1p  transcript_id AT3G20310.1  
At3g20320	chr3:007089125	0.0	C/7089125-7089640,7088718-7089047,7088465-7088580,7087848-7087938,7087657-7087749	AT3G20320.1  CDS  gene_syn TGD2, TRIGALACTOSYLDIACYLGLYCEROL2  gene TGD2  function Encodes a permease-like component of an ABC transporter involved in lipid transfer from ER to chloroplast. A phosphatidic acid-binding protein with a predicted mycobacterial cell entry domain. It is tethered to the inner chloroplast envelope membrane facing the outer envelope membrane. Presumed bacterial orthologs of TGD1 and TGD2 in Gram-negative bacteria are typically organized in transcriptional units, suggesting their involvement in a common biological process.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component chloroplast inner membrane|GO:0009706|16818883|IDA  go_component membrane|GO:0016020|11152613|ISS  go_process lipid transport|GO:0006869|16818883|IMP  go_function lipid transporter activity|GO:0005319|16818883|IMP  go_function phospholipid binding|GO:0005543|16818883|IDA  product TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2); lipid transporter/ phospholipid binding  note TRIGALACTOSYLDIACYLGLYCEROL2 (TGD2); FUNCTIONS IN: phospholipid binding, lipid transporter activity; INVOLVED IN: lipid transport; LOCATED IN: chloroplast, chloroplast inner membrane, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mammalian cell entry related (InterPro:IPR003399); Has 499 Blast hits to 463 proteins in 145 species: Archae - 0; Bacteria - 304; Metazoa - 0; Fungi - 1; Plants - 29; Viruses - 0; Other Eukaryotes - 165 (source: NCBI BLink).  protein_id AT3G20320.1p  transcript_id AT3G20320.1  protein_id AT3G20320.1p  transcript_id AT3G20320.1  
At3g20320	chr3:007089125	0.0	C/7089125-7089640,7088718-7089047,7088589-7088591	AT3G20320.2  CDS  gene_syn TGD2, TRIGALACTOSYLDIACYLGLYCEROL2  gene TGD2  function Encodes a permease-like component of an ABC transporter involved in lipid transfer from ER to chloroplast. A phosphatidic acid-binding protein with a predicted mycobacterial cell entry domain. It is tethered to the inner chloroplast envelope membrane facing the outer envelope membrane. Presumed bacterial orthologs of TGD1 and TGD2 in Gram-negative bacteria are typically organized in transcriptional units, suggesting their involvement in a common biological process.  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component chloroplast inner membrane|GO:0009706|16818883|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component membrane|GO:0016020|11152613|ISS  go_process lipid transport|GO:0006869|16818883|IMP  go_function lipid transporter activity|GO:0005319|16818883|IMP  go_function phospholipid binding|GO:0005543|16818883|IDA  product TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2); lipid transporter/ phospholipid binding  note TRIGALACTOSYLDIACYLGLYCEROL2 (TGD2); FUNCTIONS IN: phospholipid binding, lipid transporter activity; INVOLVED IN: lipid transport; LOCATED IN: chloroplast, chloroplast envelope, chloroplast inner membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mammalian cell entry related (InterPro:IPR003399); Has 380 Blast hits to 380 proteins in 120 species: Archae - 0; Bacteria - 208; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).  protein_id AT3G20320.2p  transcript_id AT3G20320.2  protein_id AT3G20320.2p  transcript_id AT3G20320.2  
At3g20330	chr3:007091391	0.0	C/7091391-7091904,7091166-7091305,7090893-7091066,7090538-7090774,7090354-7090461	AT3G20330.1  CDS  function encodes aspartate carbamoyltransferase catalyzing the second step in the de novo pyrimidine ribonucleotide biosynthesis  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_process amino acid metabolic process|GO:0006520||ISS  go_process pyrimidine ribonucleotide biosynthetic process|GO:0009220|8041358|IGI  go_function aspartate carbamoyltransferase activity|GO:0004070|8041358|IGI  go_function amino acid binding|GO:0016597||ISS  go_function carboxyl- or carbamoyltransferase activity|GO:0016743||ISS  product aspartate carabmoyltransferase, chloroplast / aspartate transcarbamylase / ATCase (PYRB)  note aspartate carabmoyltransferase, chloroplast / aspartate transcarbamylase / ATCase (PYRB); FUNCTIONS IN: amino acid binding, aspartate carbamoyltransferase activity, carboxyl- or carbamoyltransferase activity; INVOLVED IN: amino acid metabolic process, pyrimidine ribonucleotide biosynthetic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding (InterPro:IPR006132), Aspartate/ornithine carbamoyltransferase (InterPro:IPR006130), Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region (InterPro:IPR006131), Aspartate carbamoyltransferase, eukaryotic (InterPro:IPR002082); BEST Arabidopsis thaliana protein match is: OTC (ORNITHINE CARBAMOYLTRANSFERASE); amino acid binding / carboxyl- or carbamoyltransferase/ ornithine carbamoyltransferase (TAIR:AT1G75330.1); Has 11482 Blast hits to 11482 proteins in 1641 species: Archae - 344; Bacteria - 5919; Metazoa - 197; Fungi - 195; Plants - 66; Viruses - 6; Other Eukaryotes - 4755 (source: NCBI BLink).  protein_id AT3G20330.1p  transcript_id AT3G20330.1  protein_id AT3G20330.1p  transcript_id AT3G20330.1  
At3g20340	chr3:007093075	0.0	C/7093075-7093422	AT3G20340.1  CDS  function Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress, N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21920.1); Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G20340.1p  transcript_id AT3G20340.1  protein_id AT3G20340.1p  transcript_id AT3G20340.1  
At3g20350	chr3:007096602	0.0	W/7096602-7096982,7097348-7097467,7097852-7099372	AT3G20350.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G50660.1); Has 12705 Blast hits to 9116 proteins in 652 species: Archae - 129; Bacteria - 887; Metazoa - 6299; Fungi - 925; Plants - 433; Viruses - 39; Other Eukaryotes - 3993 (source: NCBI BLink).  protein_id AT3G20350.1p  transcript_id AT3G20350.1  protein_id AT3G20350.1p  transcript_id AT3G20350.1  
At3g20360	chr3:007101291	0.0	C/7101291-7101589,7100891-7101060,7100502-7100781,7100221-7100402,7099952-7100112	AT3G20360.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT3G20370.1); Has 366 Blast hits to 278 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 7; Plants - 334; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT3G20360.1p  transcript_id AT3G20360.1  protein_id AT3G20360.1p  transcript_id AT3G20360.1  
At3g20362	chr3:007103817	0.0	W/7103817-7103838,7103892-7103916,7104154-7104250	AT3G20362.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G20362.1p  transcript_id AT3G20362.1  protein_id AT3G20362.1p  transcript_id AT3G20362.1  
At3g20365	chr3:007104309	0.0	W/7104309-7104392	AT3G20365.1  tRNA  gene_syn 60512.TRNA-TYR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT3G20365.1  
At3g20370	chr3:007105481	0.0	W/7105481-7105604,7105699-7105930,7106014-7106177,7106288-7106570,7106657-7106823,7106910-7107079	AT3G20370.1  CDS  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT3G20360.1); Has 451 Blast hits to 371 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 82; Fungi - 7; Plants - 342; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT3G20370.1p  transcript_id AT3G20370.1  protein_id AT3G20370.1p  transcript_id AT3G20370.1  
At3g20380	chr3:007108183	0.0	W/7108183-7108306,7108421-7108652,7108746-7108915,7109008-7109287,7109378-7109538,7109610-7109770	AT3G20380.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT3G20370.1); Has 275 Blast hits to 253 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 0; Plants - 241; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT3G20380.1p  transcript_id AT3G20380.1  protein_id AT3G20380.1p  transcript_id AT3G20380.1  
At3g20390	chr3:007111512	0.0	C/7111512-7111695,7111169-7111284,7111024-7111068,7110566-7110639,7110421-7110470,7110227-7110321	AT3G20390.1  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_function endoribonuclease activity|GO:0004521||ISS  product endoribonuclease L-PSP family protein  note endoribonuclease L-PSP family protein; FUNCTIONS IN: endoribonuclease activity; INVOLVED IN: response to cadmium ion; LOCATED IN: thylakoid, mitochondrion, chloroplast, plastid, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Endoribonuclease L-PSP (InterPro:IPR006175), Endoribonuclease L-PSP/chorismate mutase-like (InterPro:IPR013813), YjgF-like protein (InterPro:IPR006056); Has 6124 Blast hits to 6041 proteins in 1217 species: Archae - 83; Bacteria - 4022; Metazoa - 194; Fungi - 247; Plants - 42; Viruses - 0; Other Eukaryotes - 1536 (source: NCBI BLink).  protein_id AT3G20390.1p  transcript_id AT3G20390.1  protein_id AT3G20390.1p  transcript_id AT3G20390.1  
At3g20395	chr3:007113660	0.0	C/7113660-7113792,7112882-7113036,7112596-7112679,7112271-7112426,7112020-7112163	AT3G20395.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G66070.1); Has 6458 Blast hits to 6443 proteins in 211 species: Archae - 0; Bacteria - 6; Metazoa - 2258; Fungi - 455; Plants - 2655; Viruses - 19; Other Eukaryotes - 1065 (source: NCBI BLink).  protein_id AT3G20395.1p  transcript_id AT3G20395.1  protein_id AT3G20395.1p  transcript_id AT3G20395.1  
At3g20400	chr3:007114403	0.0	W/7114403-7114714	AT3G20400.1  CDS  gene_syn EMB2743, EMBRYO DEFECTIVE 2743  gene EMB2743  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product EMB2743 (EMBRYO DEFECTIVE 2743)  note EMBRYO DEFECTIVE 2743 (EMB2743); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated (InterPro:IPR006527); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G17620.1); Has 278 Blast hits to 273 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 278; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G20400.1p  transcript_id AT3G20400.1  protein_id AT3G20400.1p  transcript_id AT3G20400.1  
At3g20410	chr3:007116388	0.0	W/7116388-7117123,7117378-7117521,7117613-7117765,7117877-7117992,7118078-7118245,7118324-7118451,7118549-7118648,7118744-7118824	AT3G20410.1  CDS  gene_syn CPK9, calmodulin-domain protein kinase 9  gene CPK9  function calmodulin-domain protein kinase CDPK isoform 9 (CPK9)  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process signal transduction|GO:0007165|12068094|TAS  go_function calmodulin-dependent protein kinase activity|GO:0004683|12068094|ISS  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  go_function kinase activity|GO:0016301||ISS  product CPK9 (calmodulin-domain protein kinase 9); calmodulin-dependent protein kinase/ kinase  note calmodulin-domain protein kinase 9 (CPK9); FUNCTIONS IN: calmodulin-dependent protein kinase activity, kinase activity; INVOLVED IN: signal transduction, protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CPK33; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT1G50700.1); Has 101242 Blast hits to 95035 proteins in 2784 species: Archae - 68; Bacteria - 7886; Metazoa - 43896; Fungi - 12694; Plants - 16442; Viruses - 458; Other Eukaryotes - 19798 (source: NCBI BLink).  protein_id AT3G20410.1p  transcript_id AT3G20410.1  protein_id AT3G20410.1p  transcript_id AT3G20410.1  
At3g20420	chr3:007120419	0.0	C/7120419-7120895,7120140-7120295,7119683-7120047,7119371-7119548	AT3G20420.1  CDS  gene_syn ATRTL2, RNASE THREE-LIKE PROTEIN 2, RNASEIII-LIKE 2, RTL2  gene RTL2  function double-stranded RNA binding / ribonuclease III. Required for 3  external transcribed spacer (ETS) cleavage of the pre-rRNA in vivo. Localizes in the nucleus and cytoplasm.  go_process RNA processing|GO:0006396||IEA  go_component nucleus|GO:0005634|18158302|IDA  go_component cytoplasm|GO:0005737|18158302|IDA  go_function double-stranded RNA binding|GO:0003725||ISS  go_function ribonuclease III activity|GO:0004525|18158302|IMP  go_function ribonuclease III activity|GO:0004525||ISS  product RTL2 (RNASE THREE-LIKE PROTEIN 2); double-stranded RNA binding / ribonuclease III  note RNASE THREE-LIKE PROTEIN 2 (RTL2); FUNCTIONS IN: double-stranded RNA binding, ribonuclease III activity; INVOLVED IN: RNA processing; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA binding (InterPro:IPR001159), Ribonuclease III (InterPro:IPR000999); BEST Arabidopsis thaliana protein match is: RTL3 (RNase three-like protein 3); RNA binding / double-stranded RNA binding / ribonuclease III (TAIR:AT5G45150.1); Has 5251 Blast hits to 4980 proteins in 1469 species: Archae - 17; Bacteria - 2705; Metazoa - 487; Fungi - 235; Plants - 163; Viruses - 17; Other Eukaryotes - 1627 (source: NCBI BLink).  protein_id AT3G20420.1p  transcript_id AT3G20420.1  protein_id AT3G20420.1p  transcript_id AT3G20420.1  
At3g20430	chr3:007121480	0.0	W/7121480-7121757,7121869-7121974,7122507-7122650,7122805-7123074	AT3G20430.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 82 Blast hits to 82 proteins in 37 species: Archae - 0; Bacteria - 3; Metazoa - 49; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT3G20430.1p  transcript_id AT3G20430.1  protein_id AT3G20430.1p  transcript_id AT3G20430.1  
At3g20440	chr3:007130090	0.0	C/7130090-7130364,7129918-7129989,7129741-7129805,7128918-7129601,7128337-7128509,7127566-7127641,7127386-7127493,7127031-7127121,7126798-7126899,7126612-7126714,7125884-7126021,7125730-7125801,7125527-7125631,7125220-7125297,7125036-7125143,7124611-7124691,7124194-7124298,7123912-7123997,7123761-7123815,7123603-7123635	AT3G20440.1  CDS  gene_syn BE1, BRANCHING ENZYME 1, EMB2729, EMBRYO DEFECTIVE 2729  gene EMB2729  go_component chloroplast|GO:0009507|18431481|IDA  go_function catalytic activity|GO:0003824||IEA  go_function cation binding|GO:0043169||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function alpha-amylase activity|GO:0004556||ISS  product alpha-amylase/ catalytic/ cation binding  note EMBRYO DEFECTIVE 2729 (EMB2729); FUNCTIONS IN: cation binding, catalytic activity, alpha-amylase activity; INVOLVED IN: embryonic development ending in seed dormancy, carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl hydrolase, family 13, all-beta (InterPro:IPR013780), Immunoglobulin E-set (InterPro:IPR014756), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Alpha-amylase, C-terminal all beta (InterPro:IPR006048), Glycosyl hydrolase, family 13, catalytic region (InterPro:IPR006047), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: SBE2.1 (starch branching enzyme 2.1); 1,4-alpha-glucan branching enzyme (TAIR:AT2G36390.1); Has 4885 Blast hits to 4688 proteins in 1082 species: Archae - 40; Bacteria - 3215; Metazoa - 183; Fungi - 113; Plants - 762; Viruses - 0; Other Eukaryotes - 572 (source: NCBI BLink).  protein_id AT3G20440.1p  transcript_id AT3G20440.1  protein_id AT3G20440.1p  transcript_id AT3G20440.1  
At3g20440	chr3:007130090	0.0	C/7130090-7130364,7129918-7129989,7129741-7129805,7128918-7129601,7128337-7128509,7128162-7128251,7127566-7127641,7127386-7127493,7127031-7127121,7126798-7126899,7126612-7126714,7125884-7126021,7125730-7125801,7125527-7125631,7125220-7125297,7125036-7125143,7124611-7124691,7124194-7124298,7123912-7123997,7123761-7123815,7123603-7123635	AT3G20440.2  CDS  gene_syn BE1, BRANCHING ENZYME 1, EMB2729, EMBRYO DEFECTIVE 2729  gene EMB2729  go_function catalytic activity|GO:0003824||IEA  go_function cation binding|GO:0043169||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function alpha-amylase activity|GO:0004556||ISS  product alpha-amylase/ catalytic/ cation binding  note EMBRYO DEFECTIVE 2729 (EMB2729); FUNCTIONS IN: cation binding, catalytic activity, alpha-amylase activity; INVOLVED IN: embryonic development ending in seed dormancy, carbohydrate metabolic process; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl hydrolase, family 13, subfamily, catalytic region (InterPro:IPR006589), Glycosyl hydrolase, family 13, all-beta (InterPro:IPR013780), Immunoglobulin E-set (InterPro:IPR014756), Alpha-amylase, C-terminal all beta (InterPro:IPR006048), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic region (InterPro:IPR006047); BEST Arabidopsis thaliana protein match is: SBE2.1 (starch branching enzyme 2.1); 1,4-alpha-glucan branching enzyme (TAIR:AT2G36390.1).  protein_id AT3G20440.2p  transcript_id AT3G20440.2  protein_id AT3G20440.2p  transcript_id AT3G20440.2  
At3g20450	chr3:007130942	0.0	C/7130942-7131239,7130723-7130838	AT3G20450.1  CDS  go_component endoplasmic reticulum|GO:0005783||IEA  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, integral to membrane, endoplasmic reticulum; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: B-cell receptor-associated 31-like (InterPro:IPR008417); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11905.1); Has 64 Blast hits to 64 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G20450.1p  transcript_id AT3G20450.1  protein_id AT3G20450.1p  transcript_id AT3G20450.1  
At3g20460	chr3:007135050	0.0	W/7135050-7135259,7135523-7135585,7136028-7136117,7136251-7136310,7136537-7136602,7136707-7136772,7136857-7136932,7137046-7137110,7137234-7137326,7137412-7137492,7137567-7137651,7137750-7137856,7137970-7138029,7138191-7138244,7138481-7138540,7139145-7139259,7139354-7139469	AT3G20460.1  CDS  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product sugar transporter, putative  note sugar transporter, putative; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter, putative (TAIR:AT3G05165.3); Has 17047 Blast hits to 16548 proteins in 1166 species: Archae - 244; Bacteria - 5638; Metazoa - 4631; Fungi - 4215; Plants - 1317; Viruses - 0; Other Eukaryotes - 1002 (source: NCBI BLink).  protein_id AT3G20460.1p  transcript_id AT3G20460.1  protein_id AT3G20460.1p  transcript_id AT3G20460.1  
At3g20470	chr3:007140625	0.0	C/7140625-7141149	AT3G20470.1  CDS  gene_syn ATGRP-5, GLYCINE-RICH PROTEIN 5, GRP-5, GRP5  gene GRP5  function encodes a glycine-rich protein that is expressed more abundantly in immature seed pods than in stems and leaves. Expression is not detected in roots or flowers.  go_component plant-type cell wall|GO:0009505|11693524|TAS  go_process response to abscisic acid stimulus|GO:0009737|18657431|IEP  go_process response to salicylic acid stimulus|GO:0009751|18657431|IEP  go_function structural constituent of cell wall|GO:0005199|11693524|TAS  product GRP5 (GLYCINE-RICH PROTEIN 5); structural constituent of cell wall  note GLYCINE-RICH PROTEIN 5 (GRP5); FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: response to abscisic acid stimulus, response to salicylic acid stimulus; LOCATED IN: plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages.  protein_id AT3G20470.1p  transcript_id AT3G20470.1  protein_id AT3G20470.1p  transcript_id AT3G20470.1  
At3g20475	chr3:007143546	0.0	W/7143546-7143581,7143955-7143986,7144153-7144247,7144451-7144531,7144606-7144678,7144890-7144953,7145168-7145322,7145431-7145532,7145625-7145652,7145730-7145761,7145847-7145904,7146141-7146227,7146537-7146593,7146687-7146788,7146873-7146917,7147309-7147386,7147471-7147521,7147604-7147685,7148019-7148092,7148195-7148294,7148386-7148482,7148631-7148720,7148820-7148884,7148993-7149051,7149150-7149226,7149312-7149398,7149628-7149689,7149777-7149838,7149928-7149981,7150082-7150167,7150253-7150284,7150371-7150394,7150512-7150627,7150731-7150811	AT3G20475.1  CDS  gene_syn ATMSH5, MSH5, MUTS-HOMOLOGUE 5  gene MSH5  function Encodes MSH5, a homologue of the MutS-homolog family of genes required for normal levels of recombination in budding yeast, mouse and Caenorhabditis elegans. Involved in meiotic recombination. Required for the formation of Class I interference-sensitive crossovers. Transcripts of AtMSH5 are specific to reproductive tissues and expression of the protein is abundant during prophase I of meiosis. Involved in meiotic recombination. Required for the formation of Class I interference-sensitive crossovers.  go_function ATP binding|GO:0005524||IEA  go_function mismatched DNA binding|GO:0030983||IEA  go_component condensed nuclear chromosome|GO:0000794|18318687|IDA  go_process mismatch repair|GO:0006298||ISS  go_process reciprocal meiotic recombination|GO:0007131|18318687|IMP  go_process chiasma formation|GO:0051026|18318687|IMP  go_function damaged DNA binding|GO:0003684||ISS  go_function ATP binding|GO:0005524||ISS  product MSH5 (MUTS-HOMOLOGUE 5); ATP binding / damaged DNA binding / mismatched DNA binding  note MUTS-HOMOLOGUE 5 (MSH5); FUNCTIONS IN: damaged DNA binding, mismatched DNA binding, ATP binding; INVOLVED IN: mismatch repair, reciprocal meiotic recombination, chiasma formation; LOCATED IN: condensed nuclear chromosome; EXPRESSED IN: male gametophyte, flower, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, IL.00 inflorescence just visible; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS, core (InterPro:IPR007696); BEST Arabidopsis thaliana protein match is: MSH2 (MUTS HOMOLOG 2); ATP binding / damaged DNA binding / mismatched DNA binding / protein binding (TAIR:AT3G18524.1); Has 8088 Blast hits to 7961 proteins in 1494 species: Archae - 76; Bacteria - 4606; Metazoa - 591; Fungi - 549; Plants - 233; Viruses - 3; Other Eukaryotes - 2030 (source: NCBI BLink).  protein_id AT3G20475.1p  transcript_id AT3G20475.1  protein_id AT3G20475.1p  transcript_id AT3G20475.1  
At3g20480	chr3:007153197	0.0	C/7153197-7153369,7152989-7153112,7152668-7152895,7152409-7152558,7152119-7152328,7151964-7152023,7151770-7151850,7151497-7151658	AT3G20480.1  CDS  go_process lipid A biosynthetic process|GO:0009245||IEA  go_function tetraacyldisaccharide 4 -kinase activity|GO:0009029||IEA  go_component membrane|GO:0016020|11152613|ISS  go_process lipid A biosynthetic process|GO:0009245||ISS  go_function tetraacyldisaccharide 4 -kinase activity|GO:0009029||ISS  product tetraacyldisaccharide 4 -kinase family protein  note tetraacyldisaccharide 4 -kinase family protein; FUNCTIONS IN: tetraacyldisaccharide 4 -kinase activity; INVOLVED IN: lipid A biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: sepal, flower, root, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Tetraacyldisaccharide-1-P 4&apos;-kinase (InterPro:IPR003758); Has 3277 Blast hits to 3277 proteins in 778 species: Archae - 0; Bacteria - 1601; Metazoa - 2; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 1665 (source: NCBI BLink).  protein_id AT3G20480.1p  transcript_id AT3G20480.1  protein_id AT3G20480.1p  transcript_id AT3G20480.1  
At3g20490	chr3:007156064	0.0	C/7156064-7156382,7154887-7155583,7154568-7154799,7154338-7154400,7154178-7154243	AT3G20490.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; Has 719 Blast hits to 128 proteins in 43 species: Archae - 0; Bacteria - 23; Metazoa - 33; Fungi - 24; Plants - 20; Viruses - 0; Other Eukaryotes - 619 (source: NCBI BLink).  protein_id AT3G20490.1p  transcript_id AT3G20490.1  protein_id AT3G20490.1p  transcript_id AT3G20490.1  
At3g20500	chr3:007157926	0.0	W/7157926-7158072,7158552-7159220,7159406-7159594,7159693-7159781,7160025-7160244	AT3G20500.1  CDS  gene_syn ATPAP18, PAP18, PURPLE ACID PHOSPHATASE 18  gene PAP18  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function acid phosphatase activity|GO:0003993|16244908|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PAP18 (PURPLE ACID PHOSPHATASE 18); acid phosphatase/ protein serine/threonine phosphatase  note PURPLE ACID PHOSPHATASE 18 (PAP18); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: PAP22 (PURPLE ACID PHOSPHATASE 22); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT3G52820.1); Has 1308 Blast hits to 1297 proteins in 293 species: Archae - 2; Bacteria - 397; Metazoa - 190; Fungi - 60; Plants - 434; Viruses - 0; Other Eukaryotes - 225 (source: NCBI BLink).  protein_id AT3G20500.1p  transcript_id AT3G20500.1  protein_id AT3G20500.1p  transcript_id AT3G20500.1  
At3g20510	chr3:007160884	0.0	W/7160884-7161082,7161722-7161809,7161919-7161991	AT3G20510.1  CDS  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0136, Transmembrane (InterPro:IPR005349); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G50740.1); Has 312 Blast hits to 312 proteins in 83 species: Archae - 0; Bacteria - 25; Metazoa - 175; Fungi - 10; Plants - 97; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G20510.1p  transcript_id AT3G20510.1  protein_id AT3G20510.1p  transcript_id AT3G20510.1  
At3g20520	chr3:007162845	0.0	W/7162845-7162932,7163016-7163276,7163397-7163506,7163604-7164105,7164194-7164235,7164311-7164598,7164682-7164824,7164909-7165410,7165489-7165742	AT3G20520.1  CDS  gene_syn SHV3-LIKE 3, SVL3  gene SVL3  go_process glycerol metabolic process|GO:0006071||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function phosphoric diester hydrolase activity|GO:0008081||IEA  go_function glycerophosphodiester phosphodiesterase activity|GO:0008889||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process glycerol metabolic process|GO:0006071||ISS  go_function glycerophosphodiester phosphodiesterase activity|GO:0008889||ISS  product SVL3 (SHV3-LIKE 3); glycerophosphodiester phosphodiesterase/ phosphoric diester hydrolase  note SHV3-LIKE 3 (SVL3); FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: SHV3 (SHAVEN 3); glycerophosphodiester phosphodiesterase/ kinase (TAIR:AT4G26690.1); Has 727 Blast hits to 555 proteins in 195 species: Archae - 0; Bacteria - 495; Metazoa - 12; Fungi - 0; Plants - 181; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT3G20520.1p  transcript_id AT3G20520.1  protein_id AT3G20520.1p  transcript_id AT3G20520.1  
At3g20530	chr3:007166318	0.0	W/7166318-7166453,7166550-7166731,7166813-7167002,7167080-7167474,7167549-7167806	AT3G20530.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G18610.1); Has 82581 Blast hits to 81572 proteins in 2916 species: Archae - 50; Bacteria - 7463; Metazoa - 36172; Fungi - 6378; Plants - 18448; Viruses - 324; Other Eukaryotes - 13746 (source: NCBI BLink).  protein_id AT3G20530.1p  transcript_id AT3G20530.1  protein_id AT3G20530.1p  transcript_id AT3G20530.1  
At3g20540	chr3:007168261	0.0	W/7168261-7168376,7168822-7169527,7169647-7169838,7170077-7170756,7171060-7171534,7171647-7171742,7171967-7172059,7172143-7172337,7172561-7172653,7172740-7172946,7173025-7173114,7173196-7173357	AT3G20540.1  CDS  gene_syn POLGAMMA1, polymerase gamma 1  gene POLGAMMA1  go_component nucleoid|GO:0009295|16326926|IDA  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_process DNA replication|GO:0006260||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed DNA polymerase activity|GO:0003887||IEA  go_function 3 -5  exonuclease activity|GO:0008408||IEA  go_component mitochondrion|GO:0005739|16169894|IDA  go_component chloroplast|GO:0009507|16169894|IDA  go_process DNA replication|GO:0006260||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed DNA polymerase activity|GO:0003887||ISS  product POLGAMMA1 (polymerase gamma 1); 3 -5  exonuclease/ DNA binding / DNA-directed DNA polymerase/ nucleic acid binding  note polymerase gamma 1 (POLGAMMA1); FUNCTIONS IN: 3 -5  exonuclease activity, DNA binding, DNA-directed DNA polymerase activity, nucleic acid binding; INVOLVED IN: DNA replication, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: mitochondrion, chloroplast, nucleoid; EXPRESSED IN: male gametophyte; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: DNA-directed DNA polymerase, family A (InterPro:IPR001098), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), DNA polymerase A (InterPro:IPR002298), 3&apos;-5&apos; exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: POLGAMMA2 (polymerase gamma 2); DNA binding / DNA-directed DNA polymerase (TAIR:AT1G50840.1); Has 9011 Blast hits to 7622 proteins in 1412 species: Archae - 0; Bacteria - 3743; Metazoa - 134; Fungi - 0; Plants - 65; Viruses - 217; Other Eukaryotes - 4852 (source: NCBI BLink).  protein_id AT3G20540.1p  transcript_id AT3G20540.1  protein_id AT3G20540.1p  transcript_id AT3G20540.1  
At3g20541	chr3:007173677	0.0	W/7173677-7174331	AT3G20541.1  pseudogenic_transcript  pseudo  function unknown pseudogene  
At3g20550	chr3:007177226	0.0	C/7177226-7177600,7176734-7176765,7176588-7176654,7176419-7176476,7175974-7176066,7175337-7175451,7175175-7175222,7175038-7175083,7174879-7174949,7174695-7174734	AT3G20550.1  CDS  gene_syn DAWDLE, DDL  gene DDL  function Encodes a nuclear localized FHA (forhkead) domain containing protein.Mutant plants have shortened roots, delayed flowering time, altered floral organ number, defective floral organs and reduced fertility.Ddl mutants also show reduced levels of pri-miRNAs as well as mature miRNAs suggesting involvement in biogenesis of miRNAs. DDL does not affect transcription of miRNAs directly but may act through other proteins such as DCL.  go_component chloroplast|GO:0009507|15028209|IDA  go_component nucleus|GO:0005634|16679419|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process cell proliferation|GO:0008283|16679419|IMP  go_process gene silencing by miRNA, production of miRNAs|GO:0035196|18632581|IDA  go_process gene silencing by miRNA, production of miRNAs|GO:0035196|18632581|IMP  go_function molecular_function|GO:0003674||ND  product DDL (DAWDLE)  note DAWDLE (DDL); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell proliferation, gene silencing by miRNA, production of miRNAs; LOCATED IN: cytosol, nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24410.1); Has 19528 Blast hits to 10436 proteins in 542 species: Archae - 16; Bacteria - 879; Metazoa - 10684; Fungi - 2470; Plants - 1307; Viruses - 59; Other Eukaryotes - 4113 (source: NCBI BLink).  protein_id AT3G20550.1p  transcript_id AT3G20550.1  protein_id AT3G20550.1p  transcript_id AT3G20550.1  
At3g20555	chr3:007178474	0.0	C/7178474-7178614,7178200-7178391	AT3G20555.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44770.2); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G20555.1p  transcript_id AT3G20555.1  protein_id AT3G20555.1p  transcript_id AT3G20555.1  
At3g20557	chr3:007180140	0.0	W/7180140-7180358,7180471-7180533,7180621-7180731	AT3G20557.1  CDS  product unknown protein  note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G50930.1); Has 10 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G20557.1p  transcript_id AT3G20557.1  protein_id AT3G20557.1p  transcript_id AT3G20557.1  
At3g20557	chr3:007180140	0.0	W/7180140-7180358,7180471-7180575	AT3G20557.2  CDS  product unknown protein  note unknown protein; Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G20557.2p  transcript_id AT3G20557.2  protein_id AT3G20557.2p  transcript_id AT3G20557.2  
At3g20560	chr3:007182182	0.0	W/7182182-7182222,7182456-7182546,7182659-7182753,7182973-7183030,7183536-7183720,7183818-7183875,7184315-7184355,7184460-7184534,7184715-7184771,7185054-7185120,7185332-7185475,7185565-7185786,7185887-7186048,7186151-7186228,7186313-7186390	AT3G20560.1  CDS  gene_syn ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 12, ATPDI12, ATPDIL5-3, PDI-LIKE 5-3, PDI12, PROTEIN DISULFIDE ISOMERASE 12  gene ATPDIL5-3  function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin).  go_process cell redox homeostasis|GO:0045454||IEA  go_function protein disulfide isomerase activity|GO:0003756|18574595|ISS  product ATPDIL5-3 (PDI-LIKE 5-3); protein disulfide isomerase  note PDI-LIKE 5-3 (ATPDIL5-3); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: cell redox homeostasis; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336), Protein of unknown function DUF1692 (InterPro:IPR012936); BEST Arabidopsis thaliana protein match is: thioredoxin-related (TAIR:AT1G50950.1); Has 3941 Blast hits to 2783 proteins in 281 species: Archae - 8; Bacteria - 59; Metazoa - 2191; Fungi - 606; Plants - 520; Viruses - 3; Other Eukaryotes - 554 (source: NCBI BLink).  protein_id AT3G20560.1p  transcript_id AT3G20560.1  protein_id AT3G20560.1p  transcript_id AT3G20560.1  
At3g20570	chr3:007187267	0.0	C/7187267-7187453,7186754-7187178	AT3G20570.1  CDS  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function copper ion binding|GO:0005507||ISS  product plastocyanin-like domain-containing protein  note plastocyanin-like domain-containing protein; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: plastocyanin-like domain-containing protein (TAIR:AT5G25090.1); Has 845 Blast hits to 834 proteins in 61 species: Archae - 0; Bacteria - 13; Metazoa - 2; Fungi - 4; Plants - 804; Viruses - 2; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT3G20570.1p  transcript_id AT3G20570.1  protein_id AT3G20570.1p  transcript_id AT3G20570.1  
At3g20580	chr3:007189819	0.0	C/7189819-7190416,7189091-7189569,7188063-7189004	AT3G20580.1  CDS  gene_syn COBL10, COBRA-LIKE PROTEIN 10 PRECURSOR  gene COBL10  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12376623|TAS  go_component anchored to membrane|GO:0031225|12805594|TAS  go_process biological_process|GO:0008150||ND  product COBL10 (COBRA-LIKE PROTEIN 10 PRECURSOR)  note COBRA-LIKE PROTEIN 10 PRECURSOR (COBL10); INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918); BEST Arabidopsis thaliana protein match is: COBL11 (COBRA-LIKE PROTEIN 11 PRECURSOR) (TAIR:AT4G27110.1); Has 244 Blast hits to 240 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 244; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G20580.1p  transcript_id AT3G20580.1  protein_id AT3G20580.1p  transcript_id AT3G20580.1  
At3g20590	chr3:007191686	0.0	W/7191686-7192453	AT3G20590.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product non-race specific disease resistance protein, putative  note non-race specific disease resistance protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: NDR1 (non race-specific disease resistance 1); signal transducer (TAIR:AT3G20600.1); Has 356 Blast hits to 356 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 356; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G20590.1p  transcript_id AT3G20590.1  protein_id AT3G20590.1p  transcript_id AT3G20590.1  
At3g20600	chr3:007194877	0.0	W/7194877-7195536	AT3G20600.1  CDS  gene_syn NDR1, NON-RACE SPECIFIC DISEASE RESISTANCE PROTEIN, non race-specific disease resistance 1  gene NDR1  function Required for non-race specific resistance to bacterial and fungal pathogens.Mediates systemic acquired resistance (SAR) response.  go_component plasma membrane|GO:0005886|9395402|TAS  go_component membrane|GO:0016020|9395402|ISS  go_process defense response|GO:0006952|9395402|TAS  go_process plant-type hypersensitive response|GO:0009626|12581527|IMP  go_process defense response to bacterium, incompatible interaction|GO:0009816||IMP  go_process defense response to fungus, incompatible interaction|GO:0009817||IMP  go_function signal transducer activity|GO:0004871|9395402|TAS  product NDR1 (non race-specific disease resistance 1); signal transducer  note non race-specific disease resistance 1 (NDR1); FUNCTIONS IN: signal transducer activity; INVOLVED IN: defense response to fungus, incompatible interaction, defense response to bacterium, incompatible interaction, plant-type hypersensitive response, defense response; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: stem, rosette leaf, cauline leaf, root; EXPRESSED DURING: 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: non-race specific disease resistance protein, putative (TAIR:AT3G20590.1); Has 354 Blast hits to 354 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 354; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G20600.1p  transcript_id AT3G20600.1  protein_id AT3G20600.1p  transcript_id AT3G20600.1  
At3g20610	chr3:007196723	0.0	W/7196723-7197391	AT3G20610.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product non-race specific disease resistance protein, putative  note non-race specific disease resistance protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: NDR1 (non race-specific disease resistance 1); signal transducer (TAIR:AT3G20600.1); Has 76 Blast hits to 76 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G20610.1p  transcript_id AT3G20610.1  protein_id AT3G20610.1p  transcript_id AT3G20610.1  
At3g20620	chr3:007198817	0.0	C/7198817-7199969,7198708-7198730	AT3G20620.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: F-box associated type 1 (InterPro:IPR017451); Has 108 Blast hits to 108 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G20620.1p  transcript_id AT3G20620.1  protein_id AT3G20620.1p  transcript_id AT3G20620.1  
At3g20630	chr3:007208245	0.0	C/7208245-7208340,7207970-7208141,7207764-7207876,7207325-7207661,7207002-7207096,7206181-7206314,7206049-7206105,7205863-7205940,7205539-7205593,7205405-7205428,7205183-7205263,7204849-7205047,7204708-7204765,7204507-7204632,7204329-7204417,7204146-7204235,7203734-7203904,7203526-7203638,7203300-7203429,7203001-7203176	AT3G20630.1  CDS  gene_syn ATUBP14, TITAN6, TTN6, UBIQUITIN-SPECIFIC PROTEASE 14, UBP14  gene UBP14  function Encodes a ubiquitin-specific protease. Identical to TTN6. Loss of function mutations are embryo lethals, having development arrested at the preglobular/globular stage.  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793|11576424|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|11788751|IMP  go_process protein deubiquitination|GO:0016579|11576424|IDA  go_function ubiquitin-specific protease activity|GO:0004843|11576424|IDA  go_function ubiquitin-specific protease activity|GO:0004843||ISS  product UBP14 (UBIQUITIN-SPECIFIC PROTEASE 14); ubiquitin-specific protease  note UBIQUITIN-SPECIFIC PROTEASE 14 (UBP14); FUNCTIONS IN: ubiquitin-specific protease activity; INVOLVED IN: embryonic development ending in seed dormancy, protein deubiquitination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, UBP-type (InterPro:IPR001607), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), UBA-like (InterPro:IPR009060), Ubiquitinyl hydrolase (InterPro:IPR016652); Has 1504 Blast hits to 1425 proteins in 164 species: Archae - 0; Bacteria - 2; Metazoa - 865; Fungi - 287; Plants - 105; Viruses - 0; Other Eukaryotes - 245 (source: NCBI BLink).  protein_id AT3G20630.1p  transcript_id AT3G20630.1  protein_id AT3G20630.1p  transcript_id AT3G20630.1  
At3g20640	chr3:007212970	0.0	C/7212970-7213199,7212186-7212873,7211986-7212102,7211531-7211593,7211225-7211290,7211058-7211108,7210654-7210803	AT3G20640.1  CDS  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|12679534|ISS  product ethylene-responsive protein -related  note ethylene-responsive protein -related; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT1G61660.1); Has 2718 Blast hits to 1146 proteins in 107 species: Archae - 0; Bacteria - 21; Metazoa - 331; Fungi - 82; Plants - 843; Viruses - 0; Other Eukaryotes - 1441 (source: NCBI BLink).  protein_id AT3G20640.1p  transcript_id AT3G20640.1  protein_id AT3G20640.1p  transcript_id AT3G20640.1  
At3g20650	chr3:007223864	0.0	C/7223864-7223939,7223396-7223535,7223232-7223300,7223081-7223152,7222883-7222984,7222714-7222770,7222341-7222479,7222120-7222184,7221973-7222020,7221718-7221780,7221495-7221618,7221342-7221403,7221168-7221260	AT3G20650.2  CDS  go_component chloroplast|GO:0009507||IEA  go_process mRNA capping|GO:0006370||IEA  go_process mRNA capping|GO:0006370||ISS  go_function catalytic activity|GO:0003824||ISS  product mRNA capping enzyme family protein  note mRNA capping enzyme family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: mRNA capping; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: mRNA (guanine-N(7))-methyltransferase (InterPro:IPR016899), mRNA capping enzyme, large subunit (InterPro:IPR004971); BEST Arabidopsis thaliana protein match is: mRNA capping enzyme family protein (TAIR:AT3G52210.1); Has 733 Blast hits to 725 proteins in 207 species: Archae - 0; Bacteria - 12; Metazoa - 131; Fungi - 124; Plants - 46; Viruses - 135; Other Eukaryotes - 285 (source: NCBI BLink).  protein_id AT3G20650.2p  transcript_id AT3G20650.2  protein_id AT3G20650.2p  transcript_id AT3G20650.2  
At3g20650	chr3:007223864	0.0	C/7223864-7223939,7223396-7223535,7223232-7223300,7223081-7223152,7222883-7222984,7222714-7222770,7222341-7222479,7222120-7222184,7221973-7222023,7221718-7221780,7221495-7221618,7221342-7221403,7221168-7221260	AT3G20650.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process mRNA capping|GO:0006370||IEA  go_process mRNA capping|GO:0006370||ISS  go_function catalytic activity|GO:0003824||ISS  product mRNA capping enzyme family protein  note mRNA capping enzyme family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: mRNA capping; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: mRNA (guanine-N(7))-methyltransferase (InterPro:IPR016899), mRNA capping enzyme, large subunit (InterPro:IPR004971); BEST Arabidopsis thaliana protein match is: mRNA capping enzyme family protein (TAIR:AT3G52210.1); Has 739 Blast hits to 730 proteins in 207 species: Archae - 0; Bacteria - 12; Metazoa - 131; Fungi - 123; Plants - 46; Viruses - 135; Other Eukaryotes - 292 (source: NCBI BLink).  protein_id AT3G20650.1p  transcript_id AT3G20650.1  protein_id AT3G20650.1p  transcript_id AT3G20650.1  
At3g20655	chr3:007224218	0.0	C/7224218-7224290	AT3G20655.1  tRNA  gene_syn 60686.TRNA-ARG-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: ACG)  transcript_id AT3G20655.1  
At3g20660	chr3:007228099	0.0	C/7228099-7228510,7225271-7226439	AT3G20660.1  CDS  gene_syn Arabidopsis thaliana ORGANIC CATION/CARNITINE TRANSPORTER4, AtOCT4  gene AtOCT4  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product AtOCT4 (Arabidopsis thaliana ORGANIC CATION/CARNITINE TRANSPORTER4); carbohydrate transmembrane transporter/ sugar:hydrogen symporter  note Arabidopsis thaliana ORGANIC CATION/CARNITINE TRANSPORTER4 (AtOCT4); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast thylakoid membrane, membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: AtOCT1 (Arabidopsis thaliana ORGANIC CATION/CARNITINE TRANSPORTER1); carbohydrate transmembrane transporter/ carnitine transporter/ transporter (TAIR:AT1G73220.1); Has 17732 Blast hits to 17562 proteins in 1146 species: Archae - 294; Bacteria - 8210; Metazoa - 4427; Fungi - 3016; Plants - 991; Viruses - 0; Other Eukaryotes - 794 (source: NCBI BLink).  protein_id AT3G20660.1p  transcript_id AT3G20660.1  protein_id AT3G20660.1p  transcript_id AT3G20660.1  
At3g20670	chr3:007229472	0.0	W/7229472-7229660,7229754-7229963	AT3G20670.1  CDS  gene_syn HTA13  gene HTA13  function Encodes HTA13, a histone H2A protein.  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product HTA13; DNA binding  note HTA13; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: HTA10; DNA binding (TAIR:AT1G51060.1); Has 3273 Blast hits to 3273 proteins in 306 species: Archae - 0; Bacteria - 0; Metazoa - 2207; Fungi - 236; Plants - 450; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink).  protein_id AT3G20670.1p  transcript_id AT3G20670.1  protein_id AT3G20670.1p  transcript_id AT3G20670.1  
At3g20680	chr3:007230147	0.0	C/7230147-7231163	AT3G20680.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 16 Blast hits to 16 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G20680.1p  transcript_id AT3G20680.1  protein_id AT3G20680.1p  transcript_id AT3G20680.1  
At3g20690	chr3:007231570	0.0	C/7231570-7232682	AT3G20690.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box protein-related  note F-box protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein-related (TAIR:AT3G20700.1); Has 714 Blast hits to 691 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 714; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G20690.1p  transcript_id AT3G20690.1  protein_id AT3G20690.1p  transcript_id AT3G20690.1  
At3g20700	chr3:007233525	0.0	C/7233525-7234505	AT3G20700.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box protein-related (TAIR:AT3G20690.1); Has 493 Blast hits to 475 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 493; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G20700.1p  transcript_id AT3G20700.1  protein_id AT3G20700.1p  transcript_id AT3G20700.1  
At3g20705	chr3:007235948	0.0	C/7235948-7237084	AT3G20705.1  pseudogenic_transcript  pseudo  gene_syn F3H11.10  note pseudogene, hypothetical protein  
At3g20710	chr3:007237911	0.0	C/7237911-7238999	AT3G20710.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box protein-related  note F-box protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, root, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box protein-related (TAIR:AT3G20690.1); Has 703 Blast hits to 679 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G20710.1p  transcript_id AT3G20710.1  protein_id AT3G20710.1p  transcript_id AT3G20710.1  
At3g20720	chr3:007240098	0.0	W/7240098-7240209,7240291-7240379,7240691-7240800,7240895-7240949,7241249-7241337,7241585-7241651,7241727-7241789,7241999-7242115,7242282-7242375,7242460-7242539,7242630-7242702,7242808-7242851,7243333-7243400,7243539-7243621,7243727-7243884,7243965-7245087,7245394-7245677,7245897-7246109,7246199-7246355,7246465-7246754	AT3G20720.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 135 Blast hits to 133 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 117; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G20720.1p  transcript_id AT3G20720.1  protein_id AT3G20720.1p  transcript_id AT3G20720.1  
At3g20730	chr3:007247095	0.0	W/7247095-7247719,7247809-7248878	AT3G20730.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G12770.1); Has 14807 Blast hits to 4948 proteins in 149 species: Archae - 0; Bacteria - 5; Metazoa - 135; Fungi - 95; Plants - 14258; Viruses - 0; Other Eukaryotes - 314 (source: NCBI BLink).  protein_id AT3G20730.1p  transcript_id AT3G20730.1  protein_id AT3G20730.1p  transcript_id AT3G20730.1  
At3g20740	chr3:007252078	0.0	C/7252078-7252254,7250981-7251046,7250759-7250881,7250591-7250671,7250406-7250498,7250236-7250311,7250050-7250129,7249886-7249957,7249741-7249800,7249559-7249655,7249393-7249456,7249251-7249310,7249064-7249124	AT3G20740.1  CDS  gene_syn FERTILIZATION-INDEPENDENT ENDOSPERM, FERTILIZATION-INDEPENDENT ENDOSPERM 1, FIE, FIE1, FIS3  gene FIE  function Encodes a protein similar to the transcriptional regular of the animal Polycomb group and is involved in regulation of establishment of anterior-posterior polar axis in the endosperm and repression of flowering during vegetative phase. Mutation leads endosperm to develop in the absence of fertilization and flowers to form in seedlings and non-reproductive organs. Also exhibits maternal effect gametophytic lethal phenotype, which is suppressed by hypomethylation. Forms part of a large protein complex that can include VRN2 (VERNALIZATION 2), VIN3 (VERNALIZATION INSENSITIVE 3) and polycomb group proteins FERTILIZATION INDEPENDENT ENDOSPERM (FIE), CURLY LEAF (CLF) and SWINGER (SWN or EZA1). The complex has a role in establishing FLC (FLOWERING LOCUS C) repression during vernalization. In the ovule, the FIE transcript levels increase transiently just after fertilization.  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component polar nucleus|GO:0043078|10962025|IDA  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process reproduction|GO:0000003|11148284|IMP  go_process genetic imprinting|GO:0006349|16527743|IMP  go_process response to cold|GO:0009409|16983073|IEP  go_process negative regulation of flower development|GO:0009910|11698668|IMP  go_process endosperm development|GO:0009960|11090224|IMP  go_process vernalization response|GO:0010048|16983073|IMP  go_process histone methylation|GO:0016571|16527743|IMP  go_function nucleotide binding|GO:0000166||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription regulator activity|GO:0030528|11114524|ISS  product FIE (FERTILIZATION-INDEPENDENT ENDOSPERM); nucleotide binding / transcription factor/ transcription regulator  note FERTILIZATION-INDEPENDENT ENDOSPERM (FIE); FUNCTIONS IN: transcription factor activity, transcription regulator activity, nucleotide binding; INVOLVED IN: in 7 processes; LOCATED IN: CUL4 RING ubiquitin ligase complex, polar nucleus, heterotrimeric G-protein complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: protein binding / structural molecule (TAIR:AT1G79990.5); Has 12246 Blast hits to 8342 proteins in 397 species: Archae - 14; Bacteria - 2053; Metazoa - 4863; Fungi - 2664; Plants - 964; Viruses - 0; Other Eukaryotes - 1688 (source: NCBI BLink).  protein_id AT3G20740.1p  transcript_id AT3G20740.1  protein_id AT3G20740.1p  transcript_id AT3G20740.1  
At3g20750	chr3:007255016	0.0	W/7255016-7255114,7255513-7255953,7256054-7256140	AT3G20750.1  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function sequence-specific DNA binding|GO:0043565||IEA  go_function transcription factor activity|GO:0003700||ISS  product zinc finger (GATA type) family protein  note zinc finger (GATA type) family protein; FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: zinc finger (GATA type) family protein (TAIR:AT4G36620.1); Has 693 Blast hits to 688 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 273; Plants - 367; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT3G20750.1p  transcript_id AT3G20750.1  protein_id AT3G20750.1p  transcript_id AT3G20750.1  
At3g20760	chr3:007258660	0.0	C/7258660-7258891,7258506-7258586,7258065-7258320,7257634-7257944,7257456-7257547,7257187-7257366	AT3G20760.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, cotyledon; CONTAINS InterPro DOMAIN/s: Nse4 (InterPro:IPR014854); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51130.1); Has 190 Blast hits to 190 proteins in 77 species: Archae - 0; Bacteria - 4; Metazoa - 67; Fungi - 72; Plants - 37; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT3G20760.1p  transcript_id AT3G20760.1  protein_id AT3G20760.1p  transcript_id AT3G20760.1  
At3g20770	chr3:007260702	0.0	C/7260702-7262588	AT3G20770.1  CDS  gene_syn EIN3, ETHYLENE-INSENSITIVE3  gene EIN3  function ethylene-insensitive3  go_component nucleus|GO:0005634|12606727|TAS  go_component nucleus|GO:0005634|9215635|IDA  go_component nucleus|GO:0005634|9215635|TAS  go_process ethylene mediated signaling pathway|GO:0009873|12606727|TAS  go_process ethylene mediated signaling pathway|GO:0009873|9215635|IMP  go_process ethylene mediated signaling pathway|GO:0009873|9215635|TAS  go_process sugar mediated signaling|GO:0010182|12663220|TAS  go_process regulation of transcription|GO:0045449|9851977|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12606727|TAS  go_function transcription factor activity|GO:0003700|18466304|IDA  go_function transcription factor activity|GO:0003700|9215635|TAS  go_function transcription factor activity|GO:0003700|9851977|IDA  product EIN3 (ETHYLENE-INSENSITIVE3); transcription factor  note ETHYLENE-INSENSITIVE3 (EIN3); FUNCTIONS IN: transcription factor activity; INVOLVED IN: ethylene mediated signaling pathway, sugar mediated signaling, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ethylene insensitive 3 (InterPro:IPR006957); BEST Arabidopsis thaliana protein match is: EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1); transcription factor/ transcription regulator (TAIR:AT2G27050.1); Has 13412 Blast hits to 4474 proteins in 85 species: Archae - 12; Bacteria - 6; Metazoa - 252; Fungi - 618; Plants - 228; Viruses - 0; Other Eukaryotes - 12296 (source: NCBI BLink).  protein_id AT3G20770.1p  transcript_id AT3G20770.1  protein_id AT3G20770.1p  transcript_id AT3G20770.1  
At3g20780	chr3:007268417	0.0	C/7268417-7268498,7268275-7268327,7268084-7268181,7267880-7267985,7267597-7267734,7267408-7267459,7267233-7267297,7266826-7266932,7266583-7266685,7266390-7266475,7266101-7266297,7265666-7265781,7265435-7265520,7265206-7265278,7264941-7265032,7264698-7264836,7264527-7264621,7264271-7264445,7264025-7264174	AT3G20780.1  CDS  gene_syn ATTOP6B, BIN3, BRASSINOSTEROID INSENSITIVE 3, ELONGATED HYPOCOTYL 6, HYP6, RHL3, ROOT HAIRLESS 3, topoisomerase 6 subunit B  gene ATTOP6B  function Encodes putative eukaryotic homolog of archaebacterial topoisomerase VI subunit B, TOP6B. Is essential for endoreduplication and is involved in cell expansion and cell proliferation.  go_component DNA topoisomerase complex (ATP-hydrolyzing)|GO:0009330|11410368|ISS  go_process pattern specification process|GO:0007389|9165126|IMP  go_process response to brassinosteroid stimulus|GO:0009741|12119417|IMP  go_process trichome differentiation|GO:0010026|9165126|IMP  go_process DNA endoreduplication|GO:0042023|12401176|IMP  go_function DNA topoisomerase (ATP-hydrolyzing) activity|GO:0003918|11410368|ISS  go_function protein binding|GO:0005515|16339310|IPI  go_function identical protein binding|GO:0042802|16339310|IPI  product ATTOP6B (topoisomerase 6 subunit B); DNA topoisomerase (ATP-hydrolyzing)/ identical protein binding / protein binding  note topoisomerase 6 subunit B (ATTOP6B); FUNCTIONS IN: protein binding, DNA topoisomerase (ATP-hydrolyzing) activity, identical protein binding; INVOLVED IN: trichome differentiation, DNA endoreduplication, response to brassinosteroid stimulus, pattern specification process; LOCATED IN: DNA topoisomerase complex (ATP-hydrolyzing); EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase VI, subunit B, transducer (InterPro:IPR015320), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721), ATP-binding region, ATPase-like (InterPro:IPR003594); Has 649 Blast hits to 411 proteins in 106 species: Archae - 312; Bacteria - 26; Metazoa - 2; Fungi - 2; Plants - 17; Viruses - 0; Other Eukaryotes - 290 (source: NCBI BLink).  protein_id AT3G20780.1p  transcript_id AT3G20780.1  protein_id AT3G20780.1p  transcript_id AT3G20780.1  
At3g20790	chr3:007268802	0.0	W/7268802-7268930,7269032-7269172,7269261-7269309,7269457-7269474,7269665-7269780,7269874-7269987,7270175-7270225,7270304-7270392,7270473-7270533,7270620-7270697,7270790-7270897,7270986-7271099	AT3G20790.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process metabolic process|GO:0008152||ISS  go_function oxidoreductase activity|GO:0016491||ISS  product oxidoreductase family protein  note oxidoreductase family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase, N-terminal (InterPro:IPR000683), Oxidoreductase, C-terminal (InterPro:IPR004104), NAD(P)-binding (InterPro:IPR016040); Has 4552 Blast hits to 4552 proteins in 835 species: Archae - 82; Bacteria - 2763; Metazoa - 158; Fungi - 209; Plants - 21; Viruses - 0; Other Eukaryotes - 1319 (source: NCBI BLink).  protein_id AT3G20790.1p  transcript_id AT3G20790.1  protein_id AT3G20790.1p  transcript_id AT3G20790.1  
At3g20800	chr3:007273718	0.0	C/7273718-7273897,7273455-7273526,7273194-7273283,7273039-7273081,7272725-7272831,7272431-7272526,7271767-7271957,7271603-7271672,7271412-7271513	AT3G20800.1  CDS  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function molecular_function|GO:0003674||ND  product rcd1-like cell differentiation protein, putative  note rcd1-like cell differentiation protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: multicellular organismal development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cell differentiation, Rcd1-like (InterPro:IPR007216); BEST Arabidopsis thaliana protein match is: rcd1-like cell differentiation protein, putative (TAIR:AT5G12980.1); Has 357 Blast hits to 354 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 140; Fungi - 87; Plants - 64; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT3G20800.1p  transcript_id AT3G20800.1  protein_id AT3G20800.1p  transcript_id AT3G20800.1  
At3g20810	chr3:007275814	0.0	W/7275814-7276299,7276461-7276670,7277078-7277212,7277308-7277451,7277752-7277844,7277956-7278077,7278176-7278182	AT3G20810.3  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transcription factor activity|GO:0003700||ISS  product transcription factor jumonji (jmjC) domain-containing protein  note transcription factor jumonji (jmjC) domain-containing protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347); BEST Arabidopsis thaliana protein match is: transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT5G19840.1); Has 1279 Blast hits to 1270 proteins in 228 species: Archae - 0; Bacteria - 289; Metazoa - 630; Fungi - 126; Plants - 107; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).  protein_id AT3G20810.3p  transcript_id AT3G20810.3  protein_id AT3G20810.3p  transcript_id AT3G20810.3  
At3g20810	chr3:007275814	0.0	W/7275814-7276299,7276461-7276670,7277078-7277212,7277308-7277451,7277752-7277844,7277956-7278144	AT3G20810.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transcription factor activity|GO:0003700||ISS  product transcription factor jumonji (jmjC) domain-containing protein  note transcription factor jumonji (jmjC) domain-containing protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Cupin 4 (InterPro:IPR013109); BEST Arabidopsis thaliana protein match is: transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT5G19840.1); Has 1441 Blast hits to 1430 proteins in 241 species: Archae - 0; Bacteria - 331; Metazoa - 697; Fungi - 136; Plants - 113; Viruses - 3; Other Eukaryotes - 161 (source: NCBI BLink).  protein_id AT3G20810.1p  transcript_id AT3G20810.1  protein_id AT3G20810.1p  transcript_id AT3G20810.1  
At3g20810	chr3:007275814	0.0	W/7275814-7276332,7276461-7276670,7277078-7277212,7277308-7277451,7277752-7277844,7277956-7278144	AT3G20810.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transcription factor activity|GO:0003700||ISS  product transcription factor jumonji (jmjC) domain-containing protein  note transcription factor jumonji (jmjC) domain-containing protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Cupin 4 (InterPro:IPR013109); BEST Arabidopsis thaliana protein match is: transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT5G19840.1); Has 1439 Blast hits to 1428 proteins in 241 species: Archae - 0; Bacteria - 331; Metazoa - 695; Fungi - 136; Plants - 113; Viruses - 3; Other Eukaryotes - 161 (source: NCBI BLink).  protein_id AT3G20810.2p  transcript_id AT3G20810.2  protein_id AT3G20810.2p  transcript_id AT3G20810.2  
At3g20820	chr3:007280930	0.0	W/7280930-7282027	AT3G20820.1  CDS  go_component cell wall|GO:0005618|15593128|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response|GO:0006952||ISS  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction, defense response; LOCATED IN: apoplast, cell wall, chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT5G12940.1); Has 44499 Blast hits to 15701 proteins in 727 species: Archae - 21; Bacteria - 2656; Metazoa - 11718; Fungi - 478; Plants - 26751; Viruses - 0; Other Eukaryotes - 2875 (source: NCBI BLink).  protein_id AT3G20820.1p  transcript_id AT3G20820.1  protein_id AT3G20820.1p  transcript_id AT3G20820.1  
At3g20830	chr3:007285024	0.0	C/7285024-7286250	AT3G20830.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, hypocotyl, pedicel, root, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G51170.1); Has 63756 Blast hits to 53528 proteins in 1543 species: Archae - 19; Bacteria - 5673; Metazoa - 29533; Fungi - 7509; Plants - 7037; Viruses - 134; Other Eukaryotes - 13851 (source: NCBI BLink).  protein_id AT3G20830.1p  transcript_id AT3G20830.1  protein_id AT3G20830.1p  transcript_id AT3G20830.1  
At3g20840	chr3:007300764	0.0	W/7300764-7300881,7300958-7301399,7301490-7301572,7301705-7301713,7301796-7301884,7301971-7302044,7302131-7302181,7302279-7302355,7302589-7303370	AT3G20840.1  CDS  gene_syn PLETHORA 1, PLT1  gene PLT1  function Encodes a member of the AINTEGUMENTA-like (AIL) subclass of the AP2/EREBP family of transcription factors and is essential for quiescent center (QC) specification and stem cell activity. It is a key effector for establishment of the stem cell niche during embryonic pattern formation. It is transcribed in response to auxin accumulation and is dependent on auxin response transcription factors.  go_component nucleus|GO:0005634|15454085|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process pattern specification process|GO:0007389|15454085|IMP  go_process stem cell maintenance|GO:0019827|15454085|IMP  go_process root development|GO:0048364|15454085|IMP  go_process root development|GO:0048364|17960244|IGI  go_function transcription factor activity|GO:0003700|11118137|ISS  product PLT1 (PLETHORA 1); transcription factor  note PLETHORA 1 (PLT1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: stem cell maintenance, regulation of transcription, DNA-dependent, root development, pattern specification process; LOCATED IN: nucleus; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: PLT2 (PLETHORA 2); transcription factor (TAIR:AT1G51190.1); Has 4666 Blast hits to 3498 proteins in 218 species: Archae - 0; Bacteria - 4; Metazoa - 47; Fungi - 6; Plants - 4378; Viruses - 2; Other Eukaryotes - 229 (source: NCBI BLink).  protein_id AT3G20840.1p  transcript_id AT3G20840.1  protein_id AT3G20840.1p  transcript_id AT3G20840.1  
At3g20850	chr3:007304157	0.0	W/7304157-7304561	AT3G20850.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product proline-rich family protein  note proline-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, sperm cell, leaf; EXPRESSED DURING: LP.02 two leaves visible; Has 33791 Blast hits to 14744 proteins in 818 species: Archae - 81; Bacteria - 4503; Metazoa - 11563; Fungi - 3599; Plants - 8670; Viruses - 1259; Other Eukaryotes - 4116 (source: NCBI BLink).  protein_id AT3G20850.1p  transcript_id AT3G20850.1  protein_id AT3G20850.1p  transcript_id AT3G20850.1  
At3g20860	chr3:007306147	0.0	W/7306147-7306265,7306348-7306414,7306500-7306565,7306646-7306689,7306776-7306821,7306908-7306988,7307071-7307113,7307202-7307251,7307329-7307410,7307487-7307536,7307615-7307688,7307779-7307830,7307925-7308434	AT3G20860.1  CDS  gene_syn ATNEK5, MOE17.17, NIMA-RELATED KINASE5  gene ATNEK5  function Encodes a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes.  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product ATNEK5 (NIMA-RELATED KINASE5); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note NIMA-RELATED KINASE5 (ATNEK5); FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: NEK6 (NIMA (NEVER IN MITOSIS, GENE A)-RELATED 6); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT3G44200.1); Has 92545 Blast hits to 90778 proteins in 3046 species: Archae - 66; Bacteria - 8094; Metazoa - 40384; Fungi - 8230; Plants - 17840; Viruses - 452; Other Eukaryotes - 17479 (source: NCBI BLink).  protein_id AT3G20860.1p  transcript_id AT3G20860.1  protein_id AT3G20860.1p  transcript_id AT3G20860.1  
At3g20865	chr3:007308699	0.0	C/7308699-7308887	AT3G20865.1  CDS  gene_syn AGP40, arabinogalactan-protein 40  gene AGP40  function Encodes a putative arabinogalactan-protein (AGP40).  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product AGP40 (arabinogalactan-protein 40)  note arabinogalactan-protein 40 (AGP40); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 14 Blast hits to 14 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G20865.1p  transcript_id AT3G20865.1  protein_id AT3G20865.1p  transcript_id AT3G20865.1  
At3g20870	chr3:007312413	0.0	C/7312413-7312476,7311984-7312042,7311611-7311703,7311420-7311509,7311244-7311325,7310781-7310836,7310586-7310642,7310360-7310400,7310164-7310231,7309989-7310045,7309779-7309896,7309499-7309544	AT3G20870.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process metal ion transport|GO:0030001||IEA  go_function metal ion transmembrane transporter activity|GO:0046873||IEA  go_component membrane|GO:0016020||ISS  go_process metal ion transport|GO:0030001||ISS  go_function metal ion transmembrane transporter activity|GO:0046873||ISS  product metal transporter family protein  note metal transporter family protein; FUNCTIONS IN: metal ion transmembrane transporter activity; INVOLVED IN: metal ion transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: metal transporter family protein (TAIR:AT3G08650.2); Has 2198 Blast hits to 2183 proteins in 642 species: Archae - 78; Bacteria - 1120; Metazoa - 489; Fungi - 73; Plants - 72; Viruses - 0; Other Eukaryotes - 366 (source: NCBI BLink).  protein_id AT3G20870.1p  transcript_id AT3G20870.1  protein_id AT3G20870.1p  transcript_id AT3G20870.1  
At3g20880	chr3:007314977	0.0	C/7314977-7315792,7313759-7314181	AT3G20880.1  CDS  gene_syn MOE17.19  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) protein (WIP4)  note zinc finger (C2H2 type) protein (WIP4); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: central root cap of the primary root, quiescent center; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) protein (WIP5) (TAIR:AT1G51220.1); Has 11717 Blast hits to 8092 proteins in 128 species: Archae - 0; Bacteria - 0; Metazoa - 11037; Fungi - 67; Plants - 379; Viruses - 0; Other Eukaryotes - 234 (source: NCBI BLink).  protein_id AT3G20880.1p  transcript_id AT3G20880.1  protein_id AT3G20880.1p  transcript_id AT3G20880.1  
At3g20885	chr3:007319577	0.0	C/7319577-7319658	AT3G20885.1  tRNA  gene_syn 60485.TRNA-SER-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: GCT)  transcript_id AT3G20885.1  
At3g20890	chr3:007320218	0.0	W/7320218-7321054	AT3G20890.1  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA binding / nucleic acid binding / nucleotide binding  note RNA binding / nucleic acid binding / nucleotide binding; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT5G66010.1); Has 18009 Blast hits to 6834 proteins in 573 species: Archae - 17; Bacteria - 2353; Metazoa - 8618; Fungi - 803; Plants - 4240; Viruses - 179; Other Eukaryotes - 1799 (source: NCBI BLink).  protein_id AT3G20890.1p  transcript_id AT3G20890.1  protein_id AT3G20890.1p  transcript_id AT3G20890.1  
At3g20898	chr3:007323796	0.0	W/7323796-7323895,7323977-7324203	AT3G20898.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51355.1).  protein_id AT3G20898.1p  transcript_id AT3G20898.1  protein_id AT3G20898.1p  transcript_id AT3G20898.1  
At3g20900	chr3:007324637	0.0	C/7324637-7324670,7323984-7324156	AT3G20900.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G20900.1p  transcript_id AT3G20900.1  protein_id AT3G20900.1p  transcript_id AT3G20900.1  
At3g20910	chr3:007326495	0.0	W/7326495-7326497,7326822-7327086,7327166-7327254,7327357-7327431,7327784-7327948,7328055-7328369	AT3G20910.1  CDS  gene_syn NF-YA9, NUCLEAR FACTOR Y, SUBUNIT A9  gene NF-YA9  go_component nucleus|GO:0005634||IEA  go_component CCAAT-binding factor complex|GO:0016602||IEA  go_component CCAAT-binding factor complex|GO:0016602||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process negative regulation of gene-specific transcription|GO:0032582|19207209|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function specific transcriptional repressor activity|GO:0016566|19207209|IDA  product NF-YA9 (NUCLEAR FACTOR Y, SUBUNIT A9); specific transcriptional repressor/ transcription factor  note NUCLEAR FACTOR Y, SUBUNIT A9 (NF-YA9); FUNCTIONS IN: transcription factor activity, specific transcriptional repressor activity; INVOLVED IN: negative regulation of gene-specific transcription, regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: NF-YA1 (NUCLEAR FACTOR Y, SUBUNIT A1); transcription factor (TAIR:AT5G12840.4); Has 452 Blast hits to 452 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 127; Fungi - 97; Plants - 214; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT3G20910.1p  transcript_id AT3G20910.1  protein_id AT3G20910.1p  transcript_id AT3G20910.1  
At3g20920	chr3:007330600	0.0	C/7330600-7330698,7329934-7330245,7329527-7329731,7329123-7329351,7328763-7329012	AT3G20920.2  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein transport|GO:0015031||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component membrane|GO:0016020|11152613|ISS  product translocation protein-related  note translocation protein-related; FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translocation protein Sec62 (InterPro:IPR004728); Has 183 Blast hits to 183 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 80; Fungi - 44; Plants - 26; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT3G20920.2p  transcript_id AT3G20920.2  protein_id AT3G20920.2p  transcript_id AT3G20920.2  
At3g20920	chr3:007330600	0.0	C/7330600-7330698,7329934-7330248,7329527-7329731,7329123-7329351,7328763-7329012	AT3G20920.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein transport|GO:0015031||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component membrane|GO:0016020|11152613|ISS  product translocation protein-related  note translocation protein-related; FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translocation protein Sec62 (InterPro:IPR004728); Has 185 Blast hits to 185 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 80; Fungi - 46; Plants - 26; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT3G20920.1p  transcript_id AT3G20920.1  protein_id AT3G20920.1p  transcript_id AT3G20920.1  
At3g20930	chr3:007331739	0.0	W/7331739-7332049,7332139-7332236,7332321-7332531,7332621-7332718,7332810-7332875,7333017-7333094,7333282-7333350,7333442-7333548,7333663-7333749	AT3G20930.1  CDS  go_component chloroplast|GO:0009507||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: plastid developmental protein DAG, putative (TAIR:AT1G32580.1); Has 14751 Blast hits to 12137 proteins in 496 species: Archae - 6; Bacteria - 563; Metazoa - 8661; Fungi - 1738; Plants - 2443; Viruses - 0; Other Eukaryotes - 1340 (source: NCBI BLink).  protein_id AT3G20930.1p  transcript_id AT3G20930.1  protein_id AT3G20930.1p  transcript_id AT3G20930.1  
At3g20935	chr3:007334770	0.0	W/7334770-7335064,7335161-7335912	AT3G20935.1  CDS  gene_syn CYP705A28, MFD22.6  gene CYP705A28  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product CYP705A28; electron carrier/ heme binding / iron ion binding / monooxygenase  note CYP705A28; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, heme binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP705A30; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G20940.1).  protein_id AT3G20935.1p  transcript_id AT3G20935.1  protein_id AT3G20935.1p  transcript_id AT3G20935.1  
At3g20940	chr3:007339732	0.0	W/7339732-7340652,7340868-7341518	AT3G20940.1  CDS  gene_syn CYP705A30  gene CYP705A30  function a member of A-type cytochrome P450  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP705A30; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP705A30; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP705A32; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G20950.1); Has 23654 Blast hits to 23546 proteins in 1229 species: Archae - 23; Bacteria - 2087; Metazoa - 10311; Fungi - 4619; Plants - 5649; Viruses - 6; Other Eukaryotes - 959 (source: NCBI BLink).  protein_id AT3G20940.1p  transcript_id AT3G20940.1  protein_id AT3G20940.1p  transcript_id AT3G20940.1  
At3g20950	chr3:007342675	0.0	W/7342675-7342824,7343178-7343957,7344094-7344744	AT3G20950.1  CDS  gene_syn CYP705A32  gene CYP705A32  function member of CYP705A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP705A32; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP705A32; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP705A30; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G20940.1); Has 23921 Blast hits to 23844 proteins in 1265 species: Archae - 23; Bacteria - 2291; Metazoa - 10314; Fungi - 4601; Plants - 5634; Viruses - 3; Other Eukaryotes - 1055 (source: NCBI BLink).  protein_id AT3G20950.1p  transcript_id AT3G20950.1  protein_id AT3G20950.1p  transcript_id AT3G20950.1  
At3g20960	chr3:007345672	0.0	W/7345672-7346280,7346367-7347014	AT3G20960.1  CDS  gene_syn CYP705A33  gene CYP705A33  function member of CYP705A  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component cellular_component|GO:0005575||ND  go_function oxygen binding|GO:0019825||ISS  product CYP705A33; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP705A33; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP705A18; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G20090.1); Has 22915 Blast hits to 22868 proteins in 1233 species: Archae - 25; Bacteria - 2126; Metazoa - 10101; Fungi - 4375; Plants - 5351; Viruses - 3; Other Eukaryotes - 934 (source: NCBI BLink).  protein_id AT3G20960.1p  transcript_id AT3G20960.1  protein_id AT3G20960.1p  transcript_id AT3G20960.1  
At3g20966	chr3:007347786	0.0	W/7347786-7347935	AT3G20966.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G20966.1p  transcript_id AT3G20966.1  protein_id AT3G20966.1p  transcript_id AT3G20966.1  
At3g20970	chr3:007348277	0.0	W/7348277-7348499,7348644-7348805,7348882-7349057,7349520-7349623,7349727-7349838,7349995-7350069	AT3G20970.1  CDS  gene_syn ATNFU2, NFU4  gene NFU4  function Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU5 than to NFU1,2, and 3. Targeted to the mitochondrion.  go_component mitochondrion|GO:0005739|12553879|IDA  go_component mitochondrion|GO:0005739|15031412|ISS  go_process iron-sulfur cluster assembly|GO:0016226|12553879|IGI  go_process iron-sulfur cluster assembly|GO:0016226|15031412|ISS  go_function structural molecule activity|GO:0005198|12553879|TAS  product NFU4; structural molecule  note NFU4; FUNCTIONS IN: structural molecule activity; INVOLVED IN: iron-sulfur cluster assembly; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NIF system FeS cluster assembly, NifU, C-terminal (InterPro:IPR001075), HIRA-interacting protein 5 (InterPro:IPR017065), NIF system FeS cluster assembly, NifU-like scaffold, N-terminal (InterPro:IPR014824); BEST Arabidopsis thaliana protein match is: NFU5; ATP binding / structural molecule (TAIR:AT1G51390.1); Has 4494 Blast hits to 4454 proteins in 928 species: Archae - 9; Bacteria - 1784; Metazoa - 136; Fungi - 101; Plants - 104; Viruses - 2; Other Eukaryotes - 2358 (source: NCBI BLink).  protein_id AT3G20970.1p  transcript_id AT3G20970.1  protein_id AT3G20970.1p  transcript_id AT3G20970.1  
At3g20970	chr3:007348277	0.0	W/7348277-7348499,7348644-7348805,7348882-7349057,7349520-7349627	AT3G20970.2  CDS  gene_syn ATNFU2, NFU4  gene NFU4  function Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU5 than to NFU1,2, and 3. Targeted to the mitochondrion.  go_component mitochondrion|GO:0005739|12553879|IDA  go_component mitochondrion|GO:0005739|15031412|ISS  go_process iron-sulfur cluster assembly|GO:0016226|12553879|IGI  go_process iron-sulfur cluster assembly|GO:0016226|15031412|ISS  go_function structural molecule activity|GO:0005198|12553879|TAS  product NFU4; structural molecule  note NFU4; FUNCTIONS IN: structural molecule activity; INVOLVED IN: iron-sulfur cluster assembly; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NIF system FeS cluster assembly, NifU, C-terminal (InterPro:IPR001075), HIRA-interacting protein 5 (InterPro:IPR017065), NIF system FeS cluster assembly, NifU-like scaffold, N-terminal (InterPro:IPR014824); BEST Arabidopsis thaliana protein match is: NFU5; ATP binding / structural molecule (TAIR:AT1G51390.1); Has 2057 Blast hits to 2019 proteins in 312 species: Archae - 0; Bacteria - 399; Metazoa - 134; Fungi - 101; Plants - 26; Viruses - 0; Other Eukaryotes - 1397 (source: NCBI BLink).  protein_id AT3G20970.2p  transcript_id AT3G20970.2  protein_id AT3G20970.2p  transcript_id AT3G20970.2  
At3g20975	chr3:007350577	0.0	W/7350577-7355332	AT3G20975.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 8.6e-08 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At3g20978	chr3:007353907	0.0	C/7353907-7355339	AT3G20978.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT3G20975  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G20978.1  
At3g20980	chr3:007355963	0.0	W/7355963-7356372,7356476-7356603,7357287-7357966	AT3G20980.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G21000.1); Has 579 Blast hits to 477 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 27; Plants - 545; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G20980.1p  transcript_id AT3G20980.1  protein_id AT3G20980.1p  transcript_id AT3G20980.1  
At3g20990	chr3:007358840	0.0	W/7358840-7360154	AT3G20990.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 4.9e-07 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At3g20993	chr3:007360846	0.0	C/7360846-7360897,7360559-7360740	AT3G20993.1  CDS  gene_syn LCR56, Low-molecular-weight cysteine-rich 56  gene LCR56  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR56 (Low-molecular-weight cysteine-rich 56)  note Low-molecular-weight cysteine-rich 56 (LCR56); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); BEST Arabidopsis thaliana protein match is: LCR55 (Low-molecular-weight cysteine-rich 55) (TAIR:AT3G20997.1); Has 34 Blast hits to 34 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G20993.1p  transcript_id AT3G20993.1  protein_id AT3G20993.1p  transcript_id AT3G20993.1  
At3g20997	chr3:007363030	0.0	C/7363030-7363081,7362743-7362921	AT3G20997.1  CDS  gene_syn LCR55, Low-molecular-weight cysteine-rich 55  gene LCR55  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||IEA  product LCR55 (Low-molecular-weight cysteine-rich 55)  note Low-molecular-weight cysteine-rich 55 (LCR55); INVOLVED IN: defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: LCR56 (Low-molecular-weight cysteine-rich 56) (TAIR:AT3G20993.1); Has 31 Blast hits to 31 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G20997.1p  transcript_id AT3G20997.1  protein_id AT3G20997.1p  transcript_id AT3G20997.1  
At3g21000	chr3:007363921	0.0	W/7363921-7365138	AT3G21000.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20980.1); Has 713 Blast hits to 696 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 48; Plants - 645; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G21000.1p  transcript_id AT3G21000.1  protein_id AT3G21000.1p  transcript_id AT3G21000.1  
At3g21010	chr3:007366210	0.0	W/7366210-7367748	AT3G21010.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 4.6e-15 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)  
At3g21020	chr3:007368267	0.0	W/7368267-7369526	AT3G21020.1  mRNA_TE_gene  pseudo  gene_syn MSA6.32  note Transposable element gene, copia-like retrotransposon family, has a 5.4e-14 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At3g21030	chr3:007370168	0.0	W/7370168-7371403	AT3G21030.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.4e-16 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At3g21040	chr3:007372760	0.0	W/7372760-7374364	AT3G21040.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 5.7e-20 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At3g21050	chr3:007375158	0.0	W/7375158-7376420	AT3G21050.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 8.8e-18 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At3g21055	chr3:007376761	0.0	C/7376761-7377072	AT3G21055.1  CDS  gene_syn PSBTN, PSII-T, photosystem II subunit T  gene PSBTN  function Encodes photosystem II 5 kD protein subunit PSII-T. This is a nuclear-encoded gene (PsbTn) which also has a plastid-encoded paralog (PsbTc).  go_component chloroplast|GO:0009507||IEA  go_component chloroplast thylakoid lumen|GO:0009543||ISS  go_component chloroplast photosystem II|GO:0030095||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product PSBTN (photosystem II subunit T)  note photosystem II subunit T (PSBTN); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem II 5 kD protein (TAIR:AT1G51400.1); Has 59 Blast hits to 59 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G21055.1p  transcript_id AT3G21055.1  protein_id AT3G21055.1p  transcript_id AT3G21055.1  
At3g21060	chr3:007377822	0.0	W/7377822-7377840,7377924-7378022,7378140-7379227,7379313-7379559,7379752-7379942	AT3G21060.1  CDS  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: heterotrimeric G-protein complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT4G02730.1); Has 4301 Blast hits to 3013 proteins in 248 species: Archae - 10; Bacteria - 960; Metazoa - 1315; Fungi - 1005; Plants - 275; Viruses - 0; Other Eukaryotes - 736 (source: NCBI BLink).  protein_id AT3G21060.1p  transcript_id AT3G21060.1  protein_id AT3G21060.1p  transcript_id AT3G21060.1  
At3g21070	chr3:007383845	0.0	C/7383845-7383874,7383332-7383503,7383125-7383244,7382825-7383000,7382352-7382465,7382112-7382206,7381738-7381844,7381527-7381600,7381340-7381418,7380944-7381251,7380434-7380733	AT3G21070.2  CDS  gene_syn ATNADK-1, NAD KINASE 1, NADK1  gene NADK1  function Encodes a protein with NAD(H) kinase activity.  go_component cellular_component|GO:0005575||ND  go_process NADP biosynthetic process|GO:0006741|15711971|TAS  go_process response to virus|GO:0009615|15711971|IEP  go_process response to ionizing radiation|GO:0010212|15711971|IEP  go_process pyridine nucleotide biosynthetic process|GO:0019363||ISS  go_process response to hydrogen peroxide|GO:0042542|15711971|IEP  go_function NAD+ kinase activity|GO:0003951|15711971|IDA  go_function NAD+ kinase activity|GO:0003951||ISS  go_function calmodulin binding|GO:0005516|15247403|IDA  go_function NADH kinase activity|GO:0042736|15711971|IDA  product NADK1 (NAD KINASE 1); NAD+ kinase/ NADH kinase/ calmodulin binding  note NAD KINASE 1 (NADK1); FUNCTIONS IN: NAD+ kinase activity, NADH kinase activity, calmodulin binding; INVOLVED IN: response to hydrogen peroxide, response to virus, NADP biosynthetic process, pyridine nucleotide biosynthetic process, response to ionizing radiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: ATP-NAD kinase, PpnK-type (InterPro:IPR016064), ATP-NAD/AcoX kinase (InterPro:IPR002504), ATP-NAD kinase, PpnK-type, all-beta (InterPro:IPR017437); BEST Arabidopsis thaliana protein match is: NADK2; NAD+ kinase/ calmodulin binding (TAIR:AT1G21640.1); Has 5096 Blast hits to 5076 proteins in 1483 species: Archae - 167; Bacteria - 2805; Metazoa - 179; Fungi - 260; Plants - 64; Viruses - 0; Other Eukaryotes - 1621 (source: NCBI BLink).  protein_id AT3G21070.2p  transcript_id AT3G21070.2  protein_id AT3G21070.2p  transcript_id AT3G21070.2  
At3g21070	chr3:007383845	0.0	C/7383845-7383874,7383332-7383503,7383125-7383244,7382825-7383000,7382352-7382465,7382112-7382206,7381738-7381844,7381527-7381618,7381340-7381418,7380944-7381251,7380434-7380733	AT3G21070.1  CDS  gene_syn ATNADK-1, NAD KINASE 1, NADK1  gene NADK1  function Encodes a protein with NAD(H) kinase activity.  go_component cellular_component|GO:0005575||ND  go_process NADP biosynthetic process|GO:0006741|15711971|TAS  go_process response to virus|GO:0009615|15711971|IEP  go_process response to ionizing radiation|GO:0010212|15711971|IEP  go_process pyridine nucleotide biosynthetic process|GO:0019363||ISS  go_process response to hydrogen peroxide|GO:0042542|15711971|IEP  go_function NAD+ kinase activity|GO:0003951|15711971|IDA  go_function NAD+ kinase activity|GO:0003951||ISS  go_function calmodulin binding|GO:0005516|15247403|IDA  go_function NADH kinase activity|GO:0042736|15711971|IDA  product NADK1 (NAD KINASE 1); NAD+ kinase/ NADH kinase/ calmodulin binding  note NAD KINASE 1 (NADK1); FUNCTIONS IN: NAD+ kinase activity, NADH kinase activity, calmodulin binding; INVOLVED IN: response to hydrogen peroxide, response to virus, NADP biosynthetic process, pyridine nucleotide biosynthetic process, response to ionizing radiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: ATP-NAD kinase, PpnK-type (InterPro:IPR016064), ATP-NAD/AcoX kinase (InterPro:IPR002504), ATP-NAD kinase, PpnK-type, all-beta (InterPro:IPR017437); BEST Arabidopsis thaliana protein match is: NADK2; NAD+ kinase/ calmodulin binding (TAIR:AT1G21640.1); Has 5092 Blast hits to 5072 proteins in 1484 species: Archae - 167; Bacteria - 2803; Metazoa - 179; Fungi - 260; Plants - 64; Viruses - 0; Other Eukaryotes - 1619 (source: NCBI BLink).  protein_id AT3G21070.1p  transcript_id AT3G21070.1  protein_id AT3G21070.1p  transcript_id AT3G21070.1  
At3g21080	chr3:007389785	0.0	C/7389785-7389811,7389396-7389549,7389101-7389315,7388883-7389002,7388490-7388741	AT3G21080.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ABC transporter-related  note ABC transporter-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT3G21090.1); Has 119 Blast hits to 119 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 119; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G21080.1p  transcript_id AT3G21080.1  protein_id AT3G21080.1p  transcript_id AT3G21080.1  
At3g21090	chr3:007394702	0.0	C/7394702-7394933,7394170-7394249,7393342-7393803,7393102-7393224,7392857-7392988,7392502-7392786,7392149-7392421,7391953-7392060,7391497-7391877	AT3G21090.1  CDS  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ABC transporter family protein  note ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 (InterPro:IPR000412), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: CER5 (ECERIFERUM 5); ATPase, coupled to transmembrane movement of substances (TAIR:AT1G51500.1); Has 220121 Blast hits to 202487 proteins in 2591 species: Archae - 4147; Bacteria - 153709; Metazoa - 7189; Fungi - 4414; Plants - 2662; Viruses - 12; Other Eukaryotes - 47988 (source: NCBI BLink).  protein_id AT3G21090.1p  transcript_id AT3G21090.1  protein_id AT3G21090.1p  transcript_id AT3G21090.1  
At3g21100	chr3:007399162	0.0	W/7399162-7400006,7400353-7400526,7400654-7400833,7400936-7401039,7401163-7401405,7401499-7401604,7401714-7401870	AT3G21100.2  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA binding / nucleic acid binding / nucleotide binding  note RNA binding / nucleic acid binding / nucleotide binding; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, leaf whorl, embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nucleic acid binding / nucleotide binding (TAIR:AT1G51520.2); Has 198 Blast hits to 173 proteins in 35 species: Archae - 0; Bacteria - 2; Metazoa - 58; Fungi - 10; Plants - 112; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT3G21100.2p  transcript_id AT3G21100.2  protein_id AT3G21100.2p  transcript_id AT3G21100.2  
At3g21100	chr3:007400426	0.0	W/7400426-7400526,7400654-7400833,7400936-7401039,7401163-7401405,7401499-7401604,7401714-7401870	AT3G21100.1  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA binding / nucleic acid binding / nucleotide binding  note RNA binding / nucleic acid binding / nucleotide binding; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, leaf whorl, embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nucleic acid binding / nucleotide binding (TAIR:AT1G51520.2); Has 198 Blast hits to 173 proteins in 35 species: Archae - 0; Bacteria - 2; Metazoa - 58; Fungi - 10; Plants - 112; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT3G21100.1p  transcript_id AT3G21100.1  protein_id AT3G21100.1p  transcript_id AT3G21100.1  
At3g21110	chr3:007404935	0.0	C/7404935-7405273,7404724-7404825,7404468-7404597,7404269-7404361,7404090-7404178,7403851-7403931,7403591-7403680,7403377-7403466,7403232-7403282,7403088-7403134,7402851-7402908,7402696-7402761	AT3G21110.1  CDS  gene_syn 5 -PHOSPHORIBOSYL-4-(N-SUCCINOCARBOXAMIDE)-5-AMINOIMIDAZOLE SYNTHETASE, ATPURC, PUR7, PURC, PURIN 7, PURIN C, SAIRCAR SYNTHETASE  gene PUR7  function 5 -phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole synthetase (PUR7, syn. SAICAR synthetase), catalyzes aspartate addition at the alpha-amino group to the growing purine backbone.  go_component chloroplast|GO:0009507|18431481|IDA  go_process purine nucleotide biosynthetic process|GO:0006164|8938402|IGI  go_process purine nucleotide biosynthetic process|GO:0006164||ISS  go_process response to auxin stimulus|GO:0009733|8938402|IDA  go_function phosphoribosylaminoimidazolesuccinocarboxamide synthase activity|GO:0004639|8938402|IGI  go_function phosphoribosylaminoimidazolesuccinocarboxamide synthase activity|GO:0004639||ISS  product PUR7 (PURIN 7); phosphoribosylaminoimidazolesuccinocarboxamide synthase  note PURIN 7 (PUR7); FUNCTIONS IN: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity; INVOLVED IN: response to auxin stimulus, purine nucleotide biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SAICAR synthetase, conserved site (InterPro:IPR018236), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), SAICAR synthetase (InterPro:IPR001636); Has 4294 Blast hits to 4294 proteins in 1231 species: Archae - 96; Bacteria - 2239; Metazoa - 67; Fungi - 104; Plants - 27; Viruses - 0; Other Eukaryotes - 1761 (source: NCBI BLink).  protein_id AT3G21110.1p  transcript_id AT3G21110.1  protein_id AT3G21110.1p  transcript_id AT3G21110.1  
At3g21110	chr3:007404935	0.0	C/7404935-7405273,7404724-7404825,7404468-7404597,7404269-7404361,7404090-7404178,7403851-7403931,7403591-7403680,7403377-7403466,7403232-7403282,7403088-7403134,7402851-7402908,7402696-7402761	AT3G21110.2  CDS  gene_syn 5 -PHOSPHORIBOSYL-4-(N-SUCCINOCARBOXAMIDE)-5-AMINOIMIDAZOLE SYNTHETASE, ATPURC, PUR7, PURC, PURIN 7, PURIN C, SAIRCAR SYNTHETASE  gene PUR7  function 5 -phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole synthetase (PUR7, syn. SAICAR synthetase), catalyzes aspartate addition at the alpha-amino group to the growing purine backbone.  go_component chloroplast|GO:0009507|18431481|IDA  go_process purine nucleotide biosynthetic process|GO:0006164|8938402|IGI  go_process purine nucleotide biosynthetic process|GO:0006164||ISS  go_process response to auxin stimulus|GO:0009733|8938402|IDA  go_function phosphoribosylaminoimidazolesuccinocarboxamide synthase activity|GO:0004639|8938402|IGI  go_function phosphoribosylaminoimidazolesuccinocarboxamide synthase activity|GO:0004639||ISS  product PUR7 (PURIN 7); phosphoribosylaminoimidazolesuccinocarboxamide synthase  note PURIN 7 (PUR7); FUNCTIONS IN: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity; INVOLVED IN: response to auxin stimulus, purine nucleotide biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SAICAR synthetase, conserved site (InterPro:IPR018236), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), SAICAR synthetase (InterPro:IPR001636); Has 4294 Blast hits to 4294 proteins in 1231 species: Archae - 96; Bacteria - 2239; Metazoa - 67; Fungi - 104; Plants - 27; Viruses - 0; Other Eukaryotes - 1761 (source: NCBI BLink).  protein_id AT3G21110.2p  transcript_id AT3G21110.2  protein_id AT3G21110.2p  transcript_id AT3G21110.2  
At3g21120	chr3:007406326	0.0	W/7406326-7407429	AT3G21120.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G21130.1); Has 1083 Blast hits to 1060 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1081; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G21120.1p  transcript_id AT3G21120.1  protein_id AT3G21120.1p  transcript_id AT3G21120.1  
At3g21130	chr3:007408246	0.0	W/7408246-7409349	AT3G21130.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G21120.1); Has 726 Blast hits to 706 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 726; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G21130.1p  transcript_id AT3G21130.1  protein_id AT3G21130.1p  transcript_id AT3G21130.1  
At3g21140	chr3:007411826	0.0	C/7411826-7412086,7411410-7411607,7411199-7411301,7410763-7410842,7410605-7410682,7410394-7410485,7410181-7410292,7409927-7410052,7409696-7409809	AT3G21140.1  CDS  go_component chloroplast|GO:0009507||IEA  go_function FMN binding|GO:0010181||IEA  product FMN binding  note FMN binding; FUNCTIONS IN: FMN binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FMN-binding split barrel (InterPro:IPR012349), Pyridoxamine 5&apos;-phosphate oxidase-related, FMN-binding core (InterPro:IPR011576), FMN-binding split barrel, related (InterPro:IPR009002); BEST Arabidopsis thaliana protein match is: FMN binding (TAIR:AT1G51560.1); Has 478 Blast hits to 478 proteins in 176 species: Archae - 0; Bacteria - 293; Metazoa - 3; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).  protein_id AT3G21140.1p  transcript_id AT3G21140.1  protein_id AT3G21140.1p  transcript_id AT3G21140.1  
At3g21150	chr3:007412713	0.0	C/7412713-7413390	AT3G21150.1  CDS  go_component intracellular|GO:0005622||IEA  go_process response to chitin|GO:0010200|17722694|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (B-box type) family protein  note zinc finger (B-box type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding; INVOLVED IN: response to chitin, regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT4G15248.1); Has 570 Blast hits to 534 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 570; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G21150.1p  transcript_id AT3G21150.1  protein_id AT3G21150.1p  transcript_id AT3G21150.1  
At3g21160	chr3:007418167	0.0	C/7418167-7418328,7417917-7417964,7417542-7417703,7417257-7417369,7416858-7416923,7416537-7416708,7416001-7416090,7415643-7415767,7415479-7415544,7415176-7415284,7414982-7415083,7414766-7414846,7414516-7414686,7414129-7414380	AT3G21160.1  CDS  gene_syn MSA6.31  go_function mannosyl-oligosaccharide 1,2-alpha-mannosidase activity|GO:0004571||IEA  go_function calcium ion binding|GO:0005509||IEA  go_component Golgi apparatus|GO:0005794|16618929|IDA  product mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative  note mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative; FUNCTIONS IN: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, calcium ion binding; LOCATED IN: Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 47 (InterPro:IPR001382); BEST Arabidopsis thaliana protein match is: mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative (TAIR:AT1G51590.1); Has 1485 Blast hits to 1396 proteins in 139 species: Archae - 0; Bacteria - 8; Metazoa - 690; Fungi - 531; Plants - 79; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).  protein_id AT3G21160.1p  transcript_id AT3G21160.1  protein_id AT3G21160.1p  transcript_id AT3G21160.1  
At3g21170	chr3:007419976	0.0	W/7419976-7421160	AT3G21170.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10190.1); Has 786 Blast hits to 766 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 784; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G21170.1p  transcript_id AT3G21170.1  protein_id AT3G21170.1p  transcript_id AT3G21170.1  
At3g21175	chr3:007422832	0.0	W/7422832-7423125,7423242-7423328,7423408-7423541,7423630-7423761,7424133-7424238,7424366-7424437,7424536-7424598	AT3G21175.2  CDS  gene_syn TIFY2B, ZIM LIKE 1, ZIM-LIKE 1, ZML1  gene ZML1  function member of a novel family of plant-specific GATA-type transcription factors.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function sequence-specific DNA binding|GO:0043565||IEA  go_function transcription factor activity|GO:0003700||ISS  product ZML1 (ZIM-LIKE 1); sequence-specific DNA binding / transcription factor/ zinc ion binding  note ZIM-LIKE 1 (ZML1); FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Tify (InterPro:IPR010399), Zinc finger, GATA-type (InterPro:IPR000679), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: TIFY2A; sequence-specific DNA binding / transcription factor/ zinc ion binding (TAIR:AT1G51600.2); Has 1277 Blast hits to 1276 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 321; Plants - 912; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT3G21175.2p  transcript_id AT3G21175.2  protein_id AT3G21175.2p  transcript_id AT3G21175.2  
At3g21175	chr3:007422832	0.0	W/7422832-7423125,7423242-7423328,7423408-7423541,7423630-7423765	AT3G21175.3  CDS  gene_syn TIFY2B, ZIM LIKE 1, ZIM-LIKE 1, ZML1  gene ZML1  function member of a novel family of plant-specific GATA-type transcription factors.  go_function transcription factor activity|GO:0003700||ISS  product ZML1 (ZIM-LIKE 1); transcription factor  note ZIM-LIKE 1 (ZML1); FUNCTIONS IN: transcription factor activity; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: TIFY2A; sequence-specific DNA binding / transcription factor/ zinc ion binding (TAIR:AT1G51600.2); Has 656 Blast hits to 656 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 654; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G21175.3p  transcript_id AT3G21175.3  protein_id AT3G21175.3p  transcript_id AT3G21175.3  
At3g21175	chr3:007422832	0.0	W/7422832-7423125,7423242-7423334,7423408-7423541,7423630-7423761,7424133-7424238,7424366-7424437,7424536-7424598	AT3G21175.1  CDS  gene_syn TIFY2B, ZIM LIKE 1, ZIM-LIKE 1, ZML1  gene ZML1  function member of a novel family of plant-specific GATA-type transcription factors.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function sequence-specific DNA binding|GO:0043565||IEA  go_function transcription factor activity|GO:0003700||ISS  product ZML1 (ZIM-LIKE 1); sequence-specific DNA binding / transcription factor/ zinc ion binding  note ZIM-LIKE 1 (ZML1); FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Tify (InterPro:IPR010399), Zinc finger, GATA-type (InterPro:IPR000679), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: TIFY2A; sequence-specific DNA binding / transcription factor/ zinc ion binding (TAIR:AT1G51600.2); Has 1269 Blast hits to 1268 proteins in 134 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 318; Plants - 907; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT3G21175.1p  transcript_id AT3G21175.1  protein_id AT3G21175.1p  transcript_id AT3G21175.1  
At3g21180	chr3:007425770	0.0	W/7425770-7426072,7426169-7426208,7426296-7426408,7426479-7426610,7426705-7426794,7426879-7426948,7427057-7427127,7427207-7427290,7427376-7427453,7427535-7427606,7427700-7427783,7427862-7427944,7428029-7428137,7428209-7428264,7428356-7428398,7428479-7428562,7428650-7428787,7428923-7428988,7429074-7429172,7429343-7429453,7429606-7429773,7429898-7429957,7430047-7430211,7430298-7430414,7430500-7430598,7430695-7430832,7430911-7431011,7431120-7431165,7431259-7431393,7431471-7431578,7431664-7431755,7431836-7431941	AT3G21180.1  CDS  gene_syn ACA9, ATACA9, AUTOINHIBITED CA(2+)-ATPASE, AUTOINHIBITED CA(2+)-ATPASE 9  gene ACA9  function one of the type IIB calcium pump isoforms. encodes an autoinhibited Ca(2+)-ATPase that contains an N-terminal calmodulin binding autoinhibitory domain.  go_component plasma membrane|GO:0005886|15197266|IDA  go_process single fertilization|GO:0007338|15197266|IMP  go_process pollen development|GO:0009555|15197266|IMP  go_function calcium-transporting ATPase activity|GO:0005388|10748247|ISS  go_function calcium-transporting ATPase activity|GO:0005388|12805592|ISS  go_function calcium-transporting ATPase activity|GO:0005388|15197266|IDA  go_function calcium-transporting ATPase activity|GO:0005388||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function calmodulin binding|GO:0005516|15197266|IDA  product ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9); calcium-transporting ATPase/ calmodulin binding  note AUTOINHIBITED CA(2+)-ATPASE 9 (ACA9); FUNCTIONS IN: calmodulin binding, calcium-transporting ATPase activity; INVOLVED IN: single fertilization, pollen development; LOCATED IN: plasma membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, calcium-transporting, PMCA-type (InterPro:IPR006408), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), ATPase, P-type cation exchange, alpha subunit (InterPro:IPR006069), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068); BEST Arabidopsis thaliana protein match is: ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8); calcium-transporting ATPase/ calmodulin binding / protein self-association (TAIR:AT5G57110.2); Has 26111 Blast hits to 19734 proteins in 1833 species: Archae - 560; Bacteria - 15988; Metazoa - 3455; Fungi - 1741; Plants - 1138; Viruses - 3; Other Eukaryotes - 3226 (source: NCBI BLink).  protein_id AT3G21180.1p  transcript_id AT3G21180.1  protein_id AT3G21180.1p  transcript_id AT3G21180.1  
At3g21190	chr3:007434442	0.0	C/7434442-7434543,7433930-7434080,7433789-7433859,7433605-7433690,7432941-7433520,7432579-7432857	AT3G21190.1  CDS  go_component Golgi apparatus|GO:0005794|16618929|IDA  product unknown protein  note unknown protein; LOCATED IN: Golgi apparatus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51630.1); Has 401 Blast hits to 400 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 401; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G21190.1p  transcript_id AT3G21190.1  protein_id AT3G21190.1p  transcript_id AT3G21190.1  
At3g21200	chr3:007436091	0.0	W/7436091-7436450,7436553-7436633,7437090-7437194,7437331-7437480,7437588-7437845	AT3G21200.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 97 Blast hits to 97 proteins in 25 species: Archae - 0; Bacteria - 24; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT3G21200.1p  transcript_id AT3G21200.1  protein_id AT3G21200.1p  transcript_id AT3G21200.1  
At3g21210	chr3:007440180	0.0	C/7440180-7440756,7438241-7440078	AT3G21210.1  CDS  go_process response to stress|GO:0006950||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular signaling cascade, response to stress; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), UspA (InterPro:IPR006016), Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Zinc finger, PHD-type (InterPro:IPR001965), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT1G34480.1); Has 1530 Blast hits to 740 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 1494; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT3G21210.1p  transcript_id AT3G21210.1  protein_id AT3G21210.1p  transcript_id AT3G21210.1  
At3g21215	chr3:007445061	0.0	C/7445061-7445231,7444558-7444737,7444403-7444478,7444076-7444205,7443845-7443959,7443430-7443521,7443244-7443313,7443073-7443155,7442873-7442975	AT3G21215.1  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||ISS  product RNA-binding protein, putative  note RNA-binding protein, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nucleic acid binding / nucleotide binding (TAIR:AT2G42240.3); Has 4979 Blast hits to 2477 proteins in 281 species: Archae - 4; Bacteria - 187; Metazoa - 1334; Fungi - 563; Plants - 2059; Viruses - 356; Other Eukaryotes - 476 (source: NCBI BLink).  protein_id AT3G21215.1p  transcript_id AT3G21215.1  protein_id AT3G21215.1p  transcript_id AT3G21215.1  
At3g21220	chr3:007445917	0.0	W/7445917-7446963	AT3G21220.1  CDS  gene_syn ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, ATMAP2K_ALPHA, ATMKK5, MAP KINASE KINASE 5, MAP2K_A, MKK5  gene ATMKK5  function Encodes a mitogen-activated kinase kinase, dual specific protein kinase that is expressed in vegetative tissues and floral buds. Involved in innate immunity. This protein activates MPK3/MPK6 and early-defense genes redundantly with MKK4.In plants with both MKK5 and MKK6 levels reduced by RNAi plants, floral organs do not abscise suggestion a role for both proteins in mediating floral organ abscission.  go_process defense response, incompatible interaction|GO:0009814|11875555|IMP  go_process floral organ abscission|GO:0010227|18809915|IMP  go_process stomatal complex development|GO:0010374|17259259|IGI  go_process stomatal complex patterning|GO:0010375|17259259|IGI  go_function MAP kinase kinase activity|GO:0004708|9878570|ISS  go_function kinase activity|GO:0016301||ISS  product ATMKK5 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5); MAP kinase kinase/ kinase  note ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5 (ATMKK5); FUNCTIONS IN: MAP kinase kinase activity, kinase activity; INVOLVED IN: stomatal complex patterning, floral organ abscission, defense response, incompatible interaction, stomatal complex development; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATMKK4 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4); MAP kinase kinase/ kinase (TAIR:AT1G51660.1); Has 94754 Blast hits to 93537 proteins in 3315 species: Archae - 53; Bacteria - 8454; Metazoa - 41241; Fungi - 8407; Plants - 18504; Viruses - 491; Other Eukaryotes - 17604 (source: NCBI BLink).  protein_id AT3G21220.1p  transcript_id AT3G21220.1  protein_id AT3G21220.1p  transcript_id AT3G21220.1  
At3g21230	chr3:007450868	0.0	C/7450868-7451947,7448931-7449126,7448624-7448837,7448442-7448544,7448231-7448350	AT3G21230.1  CDS  gene_syn 4-coumarate:CoA ligase 5, 4CL5  gene 4CL5  function The gene encodes a 4-coumarate coenzyme A ligase being able to use sinapate as substrate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, 5-OH-ferulic acid, ferulic acid and sinapic acid. At4CL5 was unable to use cinnamic acid as substrate. Knockout of At4CL5 (4cl5) revealed no effect on syringyl lignin content indicating that the activity observed does probably not occur in vivo.  go_component cellular_component|GO:0005575||ND  go_process phenylpropanoid biosynthetic process|GO:0009699|16099486|IDA  go_function 4-coumarate-CoA ligase activity|GO:0016207|14769935|IDA  go_function 4-coumarate-CoA ligase activity|GO:0016207|16099486|IDA  product 4CL5 (4-coumarate:CoA ligase 5); 4-coumarate-CoA ligase  note 4-coumarate:CoA ligase 5 (4CL5); FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: 4CL2 (4-COUMARATE:COA LIGASE 2); 4-coumarate-CoA ligase (TAIR:AT3G21240.1); Has 56736 Blast hits to 52510 proteins in 2276 species: Archae - 569; Bacteria - 29609; Metazoa - 3151; Fungi - 3047; Plants - 1337; Viruses - 1; Other Eukaryotes - 19022 (source: NCBI BLink).  protein_id AT3G21230.1p  transcript_id AT3G21230.1  protein_id AT3G21230.1p  transcript_id AT3G21230.1  
At3g21240	chr3:007456280	0.0	C/7456280-7457314,7454931-7455343,7454721-7454823,7454497-7454616	AT3G21240.1  CDS  gene_syn 4-COUMARATE:COA LIGASE, 4-COUMARATE:COA LIGASE 2, 4CL2, AT4CL2  gene 4CL2  function encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, 5-OH-ferulic acid and cinnamic acid. At4CL2 was unable to use sinapic acid as substrate.  go_component cellular_component|GO:0005575||ND  go_process response to UV|GO:0009411|10417722|IEP  go_process response to wounding|GO:0009611|10417722|IEP  go_process response to fungus|GO:0009620|10417722|IEP  go_process phenylpropanoid metabolic process|GO:0009698|10417722|TAS  go_function 4-coumarate-CoA ligase activity|GO:0016207|10417722|IDA  product 4CL2 (4-COUMARATE:COA LIGASE 2); 4-coumarate-CoA ligase  note 4-COUMARATE:COA LIGASE 2 (4CL2); FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, response to UV, response to fungus, response to wounding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: 4CL1 (4-COUMARATE:COA LIGASE 1); 4-coumarate-CoA ligase (TAIR:AT1G51680.1); Has 57097 Blast hits to 52911 proteins in 2259 species: Archae - 610; Bacteria - 29698; Metazoa - 3105; Fungi - 3099; Plants - 1335; Viruses - 1; Other Eukaryotes - 19249 (source: NCBI BLink).  protein_id AT3G21240.1p  transcript_id AT3G21240.1  protein_id AT3G21240.1p  transcript_id AT3G21240.1  
At3g21250	chr3:007461001	0.0	C/7461001-7462491,7460583-7460903,7460455-7460508,7459723-7460334,7459481-7459645,7459100-7459394,7458732-7458946,7458344-7458649,7458203-7458266,7457875-7458114,7457668-7457789	AT3G21250.1  CDS  gene_syn ATMRP6  gene ATMRP6  function member of MRP subfamily  go_component plant-type vacuole|GO:0000325|16618929|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component vacuolar membrane|GO:0005774|16618929|IDA  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|11346655|ISS  product ATMRP6; ATPase, coupled to transmembrane movement of substances  note ATMRP6; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: response to cyclopentenone; LOCATED IN: vacuolar membrane, plasma membrane, plant-type vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATMRP14; ATPase, coupled to transmembrane movement of substances (TAIR:AT3G59140.1); Has 349065 Blast hits to 199268 proteins in 2521 species: Archae - 6508; Bacteria - 247674; Metazoa - 10439; Fungi - 4816; Plants - 3135; Viruses - 15; Other Eukaryotes - 76478 (source: NCBI BLink).  protein_id AT3G21250.1p  transcript_id AT3G21250.1  protein_id AT3G21250.1p  transcript_id AT3G21250.1  
At3g21260	chr3:007464730	0.0	C/7464730-7464848,7464501-7464636,7464269-7464412,7464132-7464167	AT3G21260.1  CDS  gene_syn GLTP3, GLYCOLIPID TRANSFER PROTEIN 3  go_component cytoplasm|GO:0005737||IEA  go_process glycolipid transport|GO:0046836||IEA  go_function glycolipid transporter activity|GO:0017089||IEA  go_function glycolipid binding|GO:0051861||IEA  product glycolipid transfer protein-related  note GLYCOLIPID TRANSFER PROTEIN 3 (GLTP3); FUNCTIONS IN: glycolipid transporter activity, glycolipid binding; INVOLVED IN: glycolipid transport; LOCATED IN: cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycolipid transfer protein, GLTP (InterPro:IPR014830); BEST Arabidopsis thaliana protein match is: GLTP2 (glycolipid transfer protein 2); glycolipid binding / glycolipid transporter (TAIR:AT1G21360.1); Has 298 Blast hits to 298 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 160; Fungi - 64; Plants - 55; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT3G21260.1p  transcript_id AT3G21260.1  protein_id AT3G21260.1p  transcript_id AT3G21260.1  
At3g21260	chr3:007465019	0.0	C/7465019-7465021,7464730-7464860,7464501-7464636,7464269-7464412,7464132-7464167	AT3G21260.2  CDS  gene_syn GLTP3, GLYCOLIPID TRANSFER PROTEIN 3  go_component cytoplasm|GO:0005737||IEA  go_process glycolipid transport|GO:0046836||IEA  go_function glycolipid transporter activity|GO:0017089||IEA  go_function glycolipid binding|GO:0051861||IEA  product glycolipid transfer protein-related  note GLYCOLIPID TRANSFER PROTEIN 3 (GLTP3); FUNCTIONS IN: glycolipid transporter activity, glycolipid binding; INVOLVED IN: glycolipid transport; LOCATED IN: cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycolipid transfer protein, GLTP (InterPro:IPR014830); BEST Arabidopsis thaliana protein match is: GLTP2 (glycolipid transfer protein 2); glycolipid binding / glycolipid transporter (TAIR:AT1G21360.1); Has 309 Blast hits to 309 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 169; Fungi - 64; Plants - 55; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT3G21260.2p  transcript_id AT3G21260.2  protein_id AT3G21260.2p  transcript_id AT3G21260.2  
At3g21260	chr3:007465587	0.0	C/7465587-7465785,7465324-7465379,7464730-7464860,7464501-7464636,7464269-7464412,7464132-7464167	AT3G21260.3  CDS  gene_syn GLTP3, GLYCOLIPID TRANSFER PROTEIN 3  go_component cytoplasm|GO:0005737||IEA  go_process glycolipid transport|GO:0046836||IEA  go_function glycolipid transporter activity|GO:0017089||IEA  go_function glycolipid binding|GO:0051861||IEA  product glycolipid transfer protein-related  note glycolipid transfer protein-related; FUNCTIONS IN: glycolipid transporter activity, glycolipid binding; INVOLVED IN: glycolipid transport; LOCATED IN: cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycolipid transfer protein, GLTP (InterPro:IPR014830); BEST Arabidopsis thaliana protein match is: GLTP2 (glycolipid transfer protein 2); glycolipid binding / glycolipid transporter (TAIR:AT1G21360.1).  protein_id AT3G21260.3p  transcript_id AT3G21260.3  protein_id AT3G21260.3p  transcript_id AT3G21260.3  
At3g21270	chr3:007474934	0.0	W/7474934-7475548	AT3G21270.1  CDS  gene_syn ADOF2  gene ADOF2  function Encodes Dof zinc finger protein adof2.  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product ADOF2; DNA binding / transcription factor  note ADOF2; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: ADOF1; DNA binding / transcription factor (TAIR:AT1G51700.1); Has 635 Blast hits to 627 proteins in 46 species: Archae - 0; Bacteria - 3; Metazoa - 2; Fungi - 4; Plants - 618; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT3G21270.1p  transcript_id AT3G21270.1  protein_id AT3G21270.1p  transcript_id AT3G21270.1  
At3g21280	chr3:007481863	0.0	C/7481863-7482037,7481448-7481593,7481307-7481342,7481095-7481202,7480766-7480866,7480531-7480654,7480316-7480375,7480113-7480231,7479903-7480011,7479488-7479576,7479274-7479343,7479107-7479187,7478936-7479028,7478812-7478860,7478392-7478499,7478166-7478296	AT3G21280.1  CDS  gene_syn UBIQUITIN-SPECIFIC PROTEASE 7, UBP7  gene UBP7  function Encodes a ubiquitin-specific protease.  go_process protein modification process|GO:0006464||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_component cellular_component|GO:0005575||ND  go_function ubiquitin-specific protease activity|GO:0004843||ISS  product UBP7 (UBIQUITIN-SPECIFIC PROTEASE 7); ubiquitin thiolesterase/ ubiquitin-specific protease  note UBIQUITIN-SPECIFIC PROTEASE 7 (UBP7); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: protein modification process, ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Ubiquitin (InterPro:IPR000626), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6); calmodulin binding / ubiquitin-specific protease (TAIR:AT1G51710.1); Has 3416 Blast hits to 3280 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 2010; Fungi - 495; Plants - 340; Viruses - 2; Other Eukaryotes - 569 (source: NCBI BLink).  protein_id AT3G21280.1p  transcript_id AT3G21280.1  protein_id AT3G21280.1p  transcript_id AT3G21280.1  
At3g21290	chr3:007482318	0.0	W/7482318-7482704,7483415-7483641,7484111-7484169,7484374-7484448,7484577-7484911,7485006-7485074,7485150-7485235,7485561-7487609,7487695-7487772,7487854-7487965,7488451-7488501,7488626-7488676	AT3G21290.1  CDS  gene_syn MXL8.16  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product dentin sialophosphoprotein-related  note dentin sialophosphoprotein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Occludin and RNA polymerase II elongation factor ELL domain (InterPro:IPR010844); Has 15416 Blast hits to 7392 proteins in 559 species: Archae - 48; Bacteria - 5567; Metazoa - 4037; Fungi - 1335; Plants - 339; Viruses - 108; Other Eukaryotes - 3982 (source: NCBI BLink).  protein_id AT3G21290.1p  transcript_id AT3G21290.1  protein_id AT3G21290.1p  transcript_id AT3G21290.1  
At3g21295	chr3:007489635	0.0	W/7489635-7489825,7490010-7490935,7491476-7492296	AT3G21295.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51745.1); Has 428 Blast hits to 314 proteins in 77 species: Archae - 0; Bacteria - 111; Metazoa - 87; Fungi - 55; Plants - 63; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).  protein_id AT3G21295.1p  transcript_id AT3G21295.1  protein_id AT3G21295.1p  transcript_id AT3G21295.1  
At3g21300	chr3:007495895	0.0	C/7495895-7496257,7495549-7495791,7495308-7495469,7495109-7495218,7494797-7494905,7494528-7494683,7494323-7494438,7494070-7494236,7493854-7493984,7493654-7493761	AT3G21300.1  CDS  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_function RNA methyltransferase activity|GO:0008173||IEA  go_function RNA methyltransferase activity|GO:0008173||ISS  product RNA methyltransferase family protein  note RNA methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, RNA binding, RNA methyltransferase activity; INVOLVED IN: RNA processing; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Methyltransferase small (InterPro:IPR007848), (Uracil-5)-methyltransferase (InterPro:IPR010280), 23S rRNA methyltransferase/RumA (InterPro:IPR001566), Deoxyribonuclease/rho motif-related TRAM (InterPro:IPR002792); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein (TAIR:AT2G28450.1); Has 5920 Blast hits to 5453 proteins in 1374 species: Archae - 144; Bacteria - 4401; Metazoa - 174; Fungi - 148; Plants - 63; Viruses - 6; Other Eukaryotes - 984 (source: NCBI BLink).  protein_id AT3G21300.1p  transcript_id AT3G21300.1  protein_id AT3G21300.1p  transcript_id AT3G21300.1  
At3g21310	chr3:007497774	0.0	W/7497774-7498286,7498373-7499011	AT3G21310.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF266, plant (InterPro:IPR004949); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51770.1); Has 332 Blast hits to 332 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 306; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT3G21310.1p  transcript_id AT3G21310.1  protein_id AT3G21310.1p  transcript_id AT3G21310.1  
At3g21320	chr3:007501085	0.0	C/7501085-7501312,7500407-7500957,7500268-7500319,7499408-7500199	AT3G21320.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ELF3 (EARLY FLOWERING 3); protein C-terminus binding / transcription factor (TAIR:AT2G25930.1); Has 39 Blast hits to 37 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G21320.1p  transcript_id AT3G21320.1  protein_id AT3G21320.1p  transcript_id AT3G21320.1  
At3g21330	chr3:007507720	0.0	W/7507720-7508841	AT3G21330.1  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: HEC2 (HECATE 2); DNA binding / transcription factor (TAIR:AT3G50330.1); Has 1545 Blast hits to 1544 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 5; Plants - 1536; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G21330.1p  transcript_id AT3G21330.1  protein_id AT3G21330.1p  transcript_id AT3G21330.1  
At3g21338	chr3:007511468	0.0	W/7511468-7511620	AT3G21338.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G21338.1p  transcript_id AT3G21338.1  protein_id AT3G21338.1p  transcript_id AT3G21338.1  
At3g21340	chr3:007515844	0.0	C/7515844-7515937,7515205-7515742,7514417-7514895,7514189-7514333,7514027-7514098,7513852-7513923,7513685-7513756,7513395-7513579,7513046-7513239,7512819-7512945,7512678-7512743,7512403-7512592,7511848-7512256	AT3G21340.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat protein kinase, putative  note leucine-rich repeat protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT2G04300.1); Has 109744 Blast hits to 87596 proteins in 3182 species: Archae - 44; Bacteria - 7745; Metazoa - 37880; Fungi - 6673; Plants - 41729; Viruses - 386; Other Eukaryotes - 15287 (source: NCBI BLink).  protein_id AT3G21340.1p  transcript_id AT3G21340.1  protein_id AT3G21340.1p  transcript_id AT3G21340.1  
At3g21350	chr3:007517106	0.0	W/7517106-7517365,7517543-7517717,7517825-7517894,7517981-7518103,7518183-7518292,7518429-7518587	AT3G21350.2  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription regulator activity|GO:0030528||IEA  product RNA polymerase transcriptional regulation mediator-related  note RNA polymerase transcriptional regulation mediator-related; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit 6, metazoa/plant (InterPro:IPR016820), MED6 mediator (InterPro:IPR007018).  protein_id AT3G21350.2p  transcript_id AT3G21350.2  protein_id AT3G21350.2p  transcript_id AT3G21350.2  
At3g21350	chr3:007517106	0.0	W/7517106-7517365,7517543-7517717,7517825-7517894,7518183-7518292,7518429-7518587	AT3G21350.1  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription regulator activity|GO:0030528||IEA  product RNA polymerase transcriptional regulation mediator-related  note RNA polymerase transcriptional regulation mediator-related; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit 6, metazoa/plant (InterPro:IPR016820), MED6 mediator (InterPro:IPR007018); Has 249 Blast hits to 249 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 93; Plants - 17; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT3G21350.1p  transcript_id AT3G21350.1  protein_id AT3G21350.1p  transcript_id AT3G21350.1  
At3g21352	chr3:007520033	0.0	W/7520033-7520138,7520242-7520360	AT3G21352.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 10 Blast hits to 10 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G21352.1p  transcript_id AT3G21352.1  protein_id AT3G21352.1p  transcript_id AT3G21352.1  
At3g21360	chr3:007522865	0.0	W/7522865-7523239,7523334-7523587,7523673-7524036	AT3G21360.1  CDS  go_component nucleus|GO:0005634|14617066|IDA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process biological_process|GO:0008150||ND  product electron carrier/ oxidoreductase  note electron carrier/ oxidoreductase; FUNCTIONS IN: electron carrier activity, oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Taurine catabolism dioxygenase TauD/TfdA (InterPro:IPR003819); Has 731 Blast hits to 725 proteins in 157 species: Archae - 0; Bacteria - 532; Metazoa - 44; Fungi - 12; Plants - 26; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT3G21360.1p  transcript_id AT3G21360.1  protein_id AT3G21360.1p  transcript_id AT3G21360.1  
At3g21370	chr3:007527424	0.0	C/7527424-7527579,7527212-7527281,7526927-7526982,7526462-7526537,7526278-7526355,7526073-7526160,7525685-7525949,7525470-7525579,7525156-7525373,7524968-7525005,7524785-7524887,7524590-7524701,7524286-7524499	AT3G21370.1  CDS  gene_syn BETA GLUCOSIDASE 19, BGLU19  gene BGLU19  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU19 (BETA GLUCOSIDASE 19); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 19 (BGLU19); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: seed; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU18 (BETA GLUCOSIDASE 18); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G52400.1); Has 5737 Blast hits to 5490 proteins in 796 species: Archae - 98; Bacteria - 3105; Metazoa - 607; Fungi - 134; Plants - 850; Viruses - 0; Other Eukaryotes - 943 (source: NCBI BLink).  protein_id AT3G21370.1p  transcript_id AT3G21370.1  protein_id AT3G21370.1p  transcript_id AT3G21370.1  
At3g21371	chr3:007527704	0.0	W/7527704-7527910	AT3G21371.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G21371.1p  transcript_id AT3G21371.1  protein_id AT3G21371.1p  transcript_id AT3G21371.1  
At3g21380	chr3:007528478	0.0	W/7528478-7528636,7529023-7529484,7529601-7530107,7530203-7530457	AT3G21380.1  CDS  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: MBP1 (MYROSINASE-BINDING PROTEIN 1); protein binding (TAIR:AT1G52040.1); Has 1279 Blast hits to 507 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1276; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G21380.1p  transcript_id AT3G21380.1  protein_id AT3G21380.1p  transcript_id AT3G21380.1  
At3g21390	chr3:007531971	0.0	W/7531971-7532102,7532261-7532371,7532795-7532906,7533187-7533314,7533594-7533746,7533910-7534062,7534207-7534425	AT3G21390.1  CDS  go_component mitochondrial inner membrane|GO:0005743||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function transporter activity|GO:0005215||ISS  go_function binding|GO:0005488||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: transporter activity, binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: mitochondrial substrate carrier family protein (TAIR:AT5G48970.1); Has 22049 Blast hits to 10311 proteins in 361 species: Archae - 0; Bacteria - 0; Metazoa - 10918; Fungi - 6094; Plants - 2986; Viruses - 0; Other Eukaryotes - 2051 (source: NCBI BLink).  protein_id AT3G21390.1p  transcript_id AT3G21390.1  protein_id AT3G21390.1p  transcript_id AT3G21390.1  
At3g21400	chr3:007536140	0.0	C/7536140-7536293,7535876-7536000,7534824-7535111	AT3G21400.1  CDS  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 17 Blast hits to 17 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G21400.1p  transcript_id AT3G21400.1  protein_id AT3G21400.1p  transcript_id AT3G21400.1  
At3g21410	chr3:007536719	0.0	C/7536719-7537951	AT3G21410.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product F-box family protein (FBW1)  note F-box family protein (FBW1); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), WD40 repeat, region (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: CEG (CEGENDUO) (TAIR:AT3G22650.1); Has 955 Blast hits to 933 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 953; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G21410.1p  transcript_id AT3G21410.1  protein_id AT3G21410.1p  transcript_id AT3G21410.1  
At3g21420	chr3:007541579	0.0	W/7541579-7541845,7542016-7542263,7542536-7542863,7542970-7543221	AT3G21420.1  CDS  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function oxidoreductase activity|GO:0016491||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G25310.1); Has 6203 Blast hits to 6161 proteins in 690 species: Archae - 0; Bacteria - 752; Metazoa - 123; Fungi - 675; Plants - 3109; Viruses - 0; Other Eukaryotes - 1544 (source: NCBI BLink).  protein_id AT3G21420.1p  transcript_id AT3G21420.1  protein_id AT3G21420.1p  transcript_id AT3G21420.1  
At3g21430	chr3:007552737	0.0	C/7552737-7552841,7552276-7552374,7552012-7552074,7551853-7551930,7551238-7551418,7550570-7550829,7549983-7550340,7549279-7549356,7548863-7549089,7548722-7548778,7548286-7548540,7547958-7548136,7547590-7547872,7547091-7547312,7546500-7546658,7545932-7546078,7545626-7545838,7545202-7545471,7544800-7544964	AT3G21430.2  CDS  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), DIRP (InterPro:IPR010561); BEST Arabidopsis thaliana protein match is: DNA binding / nucleic acid binding / transcription factor (TAIR:AT3G05380.2); Has 577 Blast hits to 527 proteins in 101 species: Archae - 0; Bacteria - 11; Metazoa - 324; Fungi - 37; Plants - 85; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).  protein_id AT3G21430.2p  transcript_id AT3G21430.2  protein_id AT3G21430.2p  transcript_id AT3G21430.2  
At3g21450	chr3:007555063	0.0	C/7555063-7555236,7554892-7555006,7554747-7554803,7554513-7554666,7554315-7554426,7553965-7554165	AT3G21450.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G26700.1); Has 26309 Blast hits to 26049 proteins in 798 species: Archae - 3; Bacteria - 508; Metazoa - 10301; Fungi - 733; Plants - 12653; Viruses - 125; Other Eukaryotes - 1986 (source: NCBI BLink).  protein_id AT3G21450.1p  transcript_id AT3G21450.1  protein_id AT3G21450.1p  transcript_id AT3G21450.1  
At3g21460	chr3:007557567	0.0	C/7557567-7557875	AT3G21460.1  CDS  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  product electron carrier/ protein disulfide oxidoreductase  note electron carrier/ protein disulfide oxidoreductase; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin family protein (TAIR:AT4G15700.1); Has 872 Blast hits to 870 proteins in 156 species: Archae - 0; Bacteria - 19; Metazoa - 227; Fungi - 162; Plants - 435; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT3G21460.1p  transcript_id AT3G21460.1  protein_id AT3G21460.1p  transcript_id AT3G21460.1  
At3g21465	chr3:007560750	0.0	W/7560750-7560885,7560964-7561071,7561165-7561319,7561430-7561523,7561619-7561689,7561766-7561872,7561991-7562112,7562553-7562641,7562757-7562816,7562901-7563005,7563083-7563202	AT3G21465.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G15640.1); Has 24 Blast hits to 24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G21465.1p  transcript_id AT3G21465.1  protein_id AT3G21465.1p  transcript_id AT3G21465.1  
At3g21465	chr3:007560750	0.0	W/7560750-7560885,7560964-7561071,7561165-7561319,7561430-7561523,7561619-7561689,7561766-7561872,7561991-7562112,7562553-7562698	AT3G21465.2  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G15640.1); Has 24 Blast hits to 24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G21465.2p  transcript_id AT3G21465.2  protein_id AT3G21465.2p  transcript_id AT3G21465.2  
At3g21470	chr3:007563746	0.0	W/7563746-7565074	AT3G21470.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: CRR4 (CHLORORESPIRATORY REDUCTION 4) (TAIR:AT2G45350.1); Has 16843 Blast hits to 5354 proteins in 152 species: Archae - 0; Bacteria - 2; Metazoa - 226; Fungi - 116; Plants - 16098; Viruses - 0; Other Eukaryotes - 401 (source: NCBI BLink).  protein_id AT3G21470.1p  transcript_id AT3G21470.1  protein_id AT3G21470.1p  transcript_id AT3G21470.1  
At3g21475	chr3:007567394	0.0	C/7567394-7567465	AT3G21475.1  tRNA  gene_syn 60473.TRNA-PRO-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: AGG)  transcript_id AT3G21475.1  
At3g21480	chr3:007567730	0.0	W/7567730-7567811,7568022-7568462,7568861-7570842,7571006-7571275,7571358-7571438,7571530-7571641,7571733-7571799,7571900-7571990	AT3G21480.1  CDS  go_component intracellular|GO:0005622||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: transcription coactivator (TAIR:AT4G03130.1); Has 489 Blast hits to 455 proteins in 115 species: Archae - 2; Bacteria - 37; Metazoa - 270; Fungi - 30; Plants - 45; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT3G21480.1p  transcript_id AT3G21480.1  protein_id AT3G21480.1p  transcript_id AT3G21480.1  
At3g21481	chr3:007572232	0.0	C/7572232-7572483	AT3G21481.1  pseudogenic_transcript  pseudo  function Pseudogene of AT4G34870; ROC5 (ROTAMASE CYP 5); peptidyl-prolyl cis-trans isomerase  
At3g21490	chr3:007573065	0.0	W/7573065-7573100,7573211-7573292,7573377-7573669	AT3G21490.1  CDS  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_process copper ion transport|GO:0006825||ISS  go_function copper ion binding|GO:0005507||ISS  product copper-binding family protein  note copper-binding family protein; FUNCTIONS IN: copper ion binding, metal ion binding; INVOLVED IN: copper ion transport, metal ion transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT1G57780.1); Has 592 Blast hits to 514 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 2; Plants - 582; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G21490.1p  transcript_id AT3G21490.1  protein_id AT3G21490.1p  transcript_id AT3G21490.1  
At3g21500	chr3:007576466	0.0	C/7576466-7576594,7576174-7576290,7575928-7576092,7575690-7575840,7575160-7575609,7574778-7575082,7574424-7574705,7574060-7574344,7573907-7573945	AT3G21500.1  CDS  gene_syn DXPS1  gene DXPS1  function Encodes a protein postulated to have 1-deoxy-D-xylulose 5-phosphate synthase activity.  go_process metabolic process|GO:0008152||IEA  go_process terpenoid biosynthetic process|GO:0016114||IEA  go_process terpenoid biosynthetic process|GO:0016114||ISS  go_function 1-deoxy-D-xylulose-5-phosphate synthase activity|GO:0008661|12777052|TAS  go_function 1-deoxy-D-xylulose-5-phosphate synthase activity|GO:0008661||ISS  product 1-deoxy-D-xylulose-5-phosphate synthase  note DXPS1; FUNCTIONS IN: 1-deoxy-D-xylulose-5-phosphate synthase activity; INVOLVED IN: metabolic process, terpenoid biosynthetic process; EXPRESSED IN: stem, embryo, sepal, stamen; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Transketolase, N-terminal (InterPro:IPR005474), Transketolase, C-terminal (InterPro:IPR005476), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Deoxyxylulose-5-phosphate synthase (InterPro:IPR005477), Transketolase C-terminal-like (InterPro:IPR015941), Transketolase, central region (InterPro:IPR005475); BEST Arabidopsis thaliana protein match is: CLA1 (CLOROPLASTOS ALTERADOS 1); 1-deoxy-D-xylulose-5-phosphate synthase (TAIR:AT4G15560.1); Has 18308 Blast hits to 17881 proteins in 1677 species: Archae - 154; Bacteria - 9091; Metazoa - 428; Fungi - 197; Plants - 261; Viruses - 0; Other Eukaryotes - 8177 (source: NCBI BLink).  protein_id AT3G21500.1p  transcript_id AT3G21500.1  protein_id AT3G21500.1p  transcript_id AT3G21500.1  
At3g21500	chr3:007576466	0.0	C/7576466-7576594,7576174-7576290,7575928-7576092,7575690-7575840,7575160-7575609,7574778-7575085,7574424-7574705,7574060-7574344,7573907-7573945	AT3G21500.2  CDS  gene_syn DXPS1  gene DXPS1  function Encodes a protein postulated to have 1-deoxy-D-xylulose 5-phosphate synthase activity.  go_process metabolic process|GO:0008152||IEA  go_process terpenoid biosynthetic process|GO:0016114||IEA  go_process terpenoid biosynthetic process|GO:0016114||ISS  go_function 1-deoxy-D-xylulose-5-phosphate synthase activity|GO:0008661|12777052|TAS  go_function 1-deoxy-D-xylulose-5-phosphate synthase activity|GO:0008661||ISS  product 1-deoxy-D-xylulose-5-phosphate synthase  note DXPS1; FUNCTIONS IN: 1-deoxy-D-xylulose-5-phosphate synthase activity; INVOLVED IN: metabolic process, terpenoid biosynthetic process; EXPRESSED IN: stem, embryo, sepal, stamen; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Transketolase, N-terminal (InterPro:IPR005474), Transketolase, C-terminal (InterPro:IPR005476), Transketolase C-terminal-like (InterPro:IPR015941), Deoxyxylulose-5-phosphate synthase (InterPro:IPR005477), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase, central region (InterPro:IPR005475); BEST Arabidopsis thaliana protein match is: CLA1 (CLOROPLASTOS ALTERADOS 1); 1-deoxy-D-xylulose-5-phosphate synthase (TAIR:AT4G15560.1); Has 18379 Blast hits to 17961 proteins in 1680 species: Archae - 154; Bacteria - 9132; Metazoa - 428; Fungi - 197; Plants - 262; Viruses - 0; Other Eukaryotes - 8206 (source: NCBI BLink).  protein_id AT3G21500.2p  transcript_id AT3G21500.2  protein_id AT3G21500.2p  transcript_id AT3G21500.2  
At3g21510	chr3:007579478	0.0	C/7579478-7579537,7579122-7579252,7578961-7579029,7578785-7578856,7578624-7578696,7578432-7578491	AT3G21510.1  CDS  gene_syn AHP1, HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1  gene AHP1  function Encodes AHP1, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).  go_component nucleus|GO:0005634|17122069|IDA  go_component cytoplasm|GO:0005737|11158442|NAS  go_component cytoplasm|GO:0005737|17122069|IDA  go_process two-component signal transduction system (phosphorelay)|GO:0000160|10050311|IMP  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_process cytokinin mediated signaling|GO:0009736|17122069|IGI  go_process cytokinin mediated signaling|GO:0009736|17122069|IMP  go_function histidine phosphotransfer kinase activity|GO:0009927|10050311|IDA  go_function histidine phosphotransfer kinase activity|GO:0009927|17122069|ISS  go_function histidine phosphotransfer kinase activity|GO:0009927|9804162|IDA  product AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1); histidine phosphotransfer kinase  note HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1 (AHP1); FUNCTIONS IN: histidine phosphotransfer kinase activity; INVOLVED IN: cytokinin mediated signaling, two-component signal transduction system (phosphorelay); LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, phosphotransfer (Hpt) region (InterPro:IPR008207); BEST Arabidopsis thaliana protein match is: AHP5 (HISTIDINE-CONTAINING PHOSPHOTRANSFER FACTOR 5); histidine phosphotransfer kinase (TAIR:AT1G03430.1); Has 195 Blast hits to 194 proteins in 45 species: Archae - 2; Bacteria - 26; Metazoa - 0; Fungi - 25; Plants - 138; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G21510.1p  transcript_id AT3G21510.1  protein_id AT3G21510.1p  transcript_id AT3G21510.1  
At3g21520	chr3:007582000	0.0	W/7582000-7582623	AT3G21520.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF679 (InterPro:IPR007770); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G21550.1); Has 151 Blast hits to 144 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G21520.1p  transcript_id AT3G21520.1  protein_id AT3G21520.1p  transcript_id AT3G21520.1  
At3g21530	chr3:007583685	0.0	C/7583685-7584448,7583387-7583594,7583184-7583313,7582828-7583102	AT3G21530.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product endonuclease/exonuclease/phosphatase family protein  note endonuclease/exonuclease/phosphatase family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein (TAIR:AT2G48030.1); Has 141 Blast hits to 141 proteins in 51 species: Archae - 0; Bacteria - 88; Metazoa - 0; Fungi - 2; Plants - 16; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT3G21530.1p  transcript_id AT3G21530.1  protein_id AT3G21530.1p  transcript_id AT3G21530.1  
At3g21540	chr3:007590623	0.0	C/7590623-7590856,7590209-7590424,7588973-7590094,7588607-7588729,7588267-7588448,7587748-7587979,7587310-7587519,7586998-7587126,7586812-7586880,7586500-7586622,7586368-7586418,7586100-7586276	AT3G21540.1  CDS  go_component nucleolus|GO:0005730|15496452|IDA  go_process rRNA processing|GO:0006364||IEA  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: rRNA processing; LOCATED IN: nucleolus, heterotrimeric G-protein complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), Small-subunit processome, Utp12 (InterPro:IPR007148); BEST Arabidopsis thaliana protein match is: TOZ (TORMOZEMBRYO DEFECTIVE); nucleotide binding (TAIR:AT5G16750.1); Has 88602 Blast hits to 24492 proteins in 650 species: Archae - 50; Bacteria - 7869; Metazoa - 42532; Fungi - 17309; Plants - 8227; Viruses - 0; Other Eukaryotes - 12615 (source: NCBI BLink).  protein_id AT3G21540.1p  transcript_id AT3G21540.1  protein_id AT3G21540.1p  transcript_id AT3G21540.1  
At3g21550	chr3:007591708	0.0	C/7591708-7592262	AT3G21550.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF679 (InterPro:IPR007770); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G21520.1); Has 153 Blast hits to 146 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G21550.1p  transcript_id AT3G21550.1  protein_id AT3G21550.1p  transcript_id AT3G21550.1  
At3g21560	chr3:007595884	0.0	W/7595884-7597374	AT3G21560.1  CDS  gene_syn MIL23.13, UGT84A2  gene UGT84A2  function Encodes a protein with sinapic acid:UDP-glucose glucosyltransferase activity. Mutants defective in this gene are hyper-fluorescent (which accumulate in their trichomes a compound that is likely to be 3 ,5 -dimethoxynaringenin chalcone or sinapoyltriacetic acid lactone, potential products of the concerted action of 4-coumarate CoA ligase and chalcone synthase on sinapic acid).  go_process metabolic process|GO:0008152||IEA  go_component cytoplasm|GO:0005737|17217457|IDA  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function sinapate 1-glucosyltransferase activity|GO:0050284|17217457|IMP  product UGT84A2; UDP-glycosyltransferase/ sinapate 1-glucosyltransferase  note UGT84A2; FUNCTIONS IN: UDP-glycosyltransferase activity, sinapate 1-glucosyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT84A3; UDP-glycosyltransferase/ sinapate 1-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT4G15490.1); Has 4906 Blast hits to 4871 proteins in 334 species: Archae - 0; Bacteria - 111; Metazoa - 1882; Fungi - 49; Plants - 2729; Viruses - 105; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT3G21560.1p  transcript_id AT3G21560.1  protein_id AT3G21560.1p  transcript_id AT3G21560.1  
At3g21570	chr3:007600297	0.0	C/7600297-7600707	AT3G21570.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 18 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G21570.1p  transcript_id AT3G21570.1  protein_id AT3G21570.1p  transcript_id AT3G21570.1  
At3g21580	chr3:007603358	0.0	C/7603358-7603720,7603131-7603247,7602812-7603048,7602562-7602726,7602386-7602461,7602253-7602317,7602009-7602161	AT3G21580.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process cobalt ion transport|GO:0006824||IEA  go_process cobalamin biosynthetic process|GO:0009236||IEA  go_function cobalt ion transmembrane transporter activity|GO:0015087||IEA  product cobalt ion transmembrane transporter  note cobalt ion transmembrane transporter; FUNCTIONS IN: cobalt ion transmembrane transporter activity; INVOLVED IN: cobalt ion transport, cobalamin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cobalt transport protein (InterPro:IPR003339); Has 867 Blast hits to 867 proteins in 369 species: Archae - 6; Bacteria - 721; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT3G21580.1p  transcript_id AT3G21580.1  protein_id AT3G21580.1p  transcript_id AT3G21580.1  
At3g21590	chr3:007605585	0.0	C/7605585-7605789,7605442-7605515,7605050-7605171,7604756-7604922,7604636-7604664	AT3G21590.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Senescence-associated (InterPro:IPR009686); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G15450.1); Has 71 Blast hits to 71 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G21590.1p  transcript_id AT3G21590.1  protein_id AT3G21590.1p  transcript_id AT3G21590.1  
At3g21600	chr3:007607768	0.0	C/7607768-7608364,7607561-7607682,7607216-7607386,7607077-7607086	AT3G21600.2  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product senescence/dehydration-associated protein-related  note senescence/dehydration-associated protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Senescence-associated (InterPro:IPR009686); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G15450.1); Has 77 Blast hits to 77 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G21600.2p  transcript_id AT3G21600.2  protein_id AT3G21600.2p  transcript_id AT3G21600.2  
At3g21600	chr3:007607768	0.0	C/7607768-7608364,7607561-7607682,7607220-7607386,7607014-7607098,7606735-7606888	AT3G21600.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product senescence/dehydration-associated protein-related  note senescence/dehydration-associated protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Senescence-associated (InterPro:IPR009686); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G15450.1); Has 79 Blast hits to 79 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 1; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G21600.1p  transcript_id AT3G21600.1  protein_id AT3G21600.1p  transcript_id AT3G21600.1  
At3g21610	chr3:007610041	0.0	C/7610041-7610205,7609833-7609883,7609637-7609729,7609377-7609436	AT3G21610.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase/vanadium-dependent haloperoxidase related (InterPro:IPR003832); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67600.1); Has 610 Blast hits to 610 proteins in 200 species: Archae - 0; Bacteria - 358; Metazoa - 0; Fungi - 0; Plants - 102; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).  protein_id AT3G21610.2p  transcript_id AT3G21610.2  protein_id AT3G21610.2p  transcript_id AT3G21610.2  
At3g21610	chr3:007610438	0.0	C/7610438-7610601,7610041-7610197,7609833-7609883,7609637-7609729,7609377-7609436	AT3G21610.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase/vanadium-dependent haloperoxidase related (InterPro:IPR003832); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67600.1); Has 626 Blast hits to 626 proteins in 204 species: Archae - 0; Bacteria - 365; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 158 (source: NCBI BLink).  protein_id AT3G21610.1p  transcript_id AT3G21610.1  protein_id AT3G21610.1p  transcript_id AT3G21610.1  
At3g21620	chr3:007613728	0.0	C/7613728-7614041,7613501-7613650,7613287-7613422,7613092-7613193,7612897-7613016,7612734-7612814,7612303-7612643,7611655-7612225,7611339-7611572,7611044-7611265	AT3G21620.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product early-responsive to dehydration protein-related / ERD protein-related  note early-responsive to dehydration protein-related / ERD protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G15430.2); Has 985 Blast hits to 872 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 168; Fungi - 458; Plants - 260; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).  protein_id AT3G21620.1p  transcript_id AT3G21620.1  protein_id AT3G21620.1p  transcript_id AT3G21620.1  
At3g21630	chr3:007617891	0.0	C/7617891-7618530,7617761-7617794,7617665-7617672,7617412-7617567,7617129-7617322,7616961-7617050,7616774-7616867,7616545-7616696,7616358-7616446,7616140-7616275,7615945-7616043,7615543-7615704	AT3G21630.1  CDS  gene_syn CERK1, CHITIN ELICITOR RECEPTOR KINASE 1, LYSM DOMAIN RECEPTOR-LIKE KINASE 1, LYSM RLK1  gene CERK1  function LysM receptor-like kinase. Essential in the perception and transduction of the chitin oligosaccharide elicitor. Involved in chitin-mediated plant innate immunity. Located in the plasma membrane.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|18042724|IDA  go_process defense response to fungus, incompatible interaction|GO:0009817|18263776|IMP  go_process response to chitin|GO:0010200|18263776|IMP  go_process detection of molecule of fungal origin|GO:0032491|18042724|IEP  go_process detection of molecule of fungal origin|GO:0032491|18042724|IMP  go_function receptor signaling protein activity|GO:0005057|18042724|IDA  go_function kinase activity|GO:0016301||ISS  go_function transmembrane receptor protein kinase activity|GO:0019199|18042724|IDA  product CERK1 (CHITIN ELICITOR RECEPTOR KINASE 1); kinase/ receptor signaling protein/ transmembrane receptor protein kinase  note CHITIN ELICITOR RECEPTOR KINASE 1 (CERK1); FUNCTIONS IN: transmembrane receptor protein kinase activity, receptor signaling protein activity, kinase activity; INVOLVED IN: defense response to fungus, incompatible interaction, response to chitin, detection of molecule of fungal origin; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), Protein kinase, ATP binding site (InterPro:IPR017441), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Transmembrane protein SKG6 (InterPro:IPR014805), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (TAIR:AT1G51940.1); Has 85124 Blast hits to 84115 proteins in 3513 species: Archae - 65; Bacteria - 7697; Metazoa - 37199; Fungi - 6577; Plants - 18635; Viruses - 547; Other Eukaryotes - 14404 (source: NCBI BLink).  protein_id AT3G21630.1p  transcript_id AT3G21630.1  protein_id AT3G21630.1p  transcript_id AT3G21630.1  
At3g21640	chr3:007621061	0.0	C/7621061-7621097,7620604-7620780,7620399-7620488,7619974-7620158,7619740-7619862,7619447-7619599,7619025-7619357	AT3G21640.1  CDS  gene_syn ATFKBP42, FKBP42, TWD1, TWISTED DWARF 1, UCU2, ULTRACURVATA 2  gene TWD1  function encodes a 42 kDa FK506-binding protein (AtFKBP42) that possesses similarity to multidomain peptidyl-prolyl cis/trans isomerases (PPIases, EC 5.2.1.8), which are known to be components of mammalian steroid hormone receptor complexes. The protein appears to be localized to the plasma membrane by electron microscopy and binds to HSP90.1 and calmodulin in vitro. It also aggregates citrate synthase in vitro but does NOT show PPIase activity in vivo. Mutants are reduced in size and exhibit disoriented growth in all organs.  go_component plasma membrane|GO:0005886|12410806|IDA  go_process leaf development|GO:0048366|12410806|IMP  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755|12410806|IDA  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755|12410806|ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  go_function calmodulin binding|GO:0005516|12410806|IDA  go_function FK506 binding|GO:0005528||ISS  product TWD1 (TWISTED DWARF 1); FK506 binding / calmodulin binding / peptidyl-prolyl cis-trans isomerase  note TWISTED DWARF 1 (TWD1); FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity, calmodulin binding; INVOLVED IN: leaf development; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026), Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: ROF1 (ROTAMASE FKBP 1); FK506 binding / calmodulin binding / peptidyl-prolyl cis-trans isomerase (TAIR:AT3G25230.2); Has 4381 Blast hits to 4077 proteins in 556 species: Archae - 12; Bacteria - 786; Metazoa - 2050; Fungi - 283; Plants - 409; Viruses - 0; Other Eukaryotes - 841 (source: NCBI BLink).  protein_id AT3G21640.1p  transcript_id AT3G21640.1  protein_id AT3G21640.1p  transcript_id AT3G21640.1  
At3g21650	chr3:007622159	0.0	C/7622159-7623412,7621680-7622066	AT3G21650.1  CDS  go_component protein phosphatase type 2A complex|GO:0000159||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein phosphatase type 2A regulator activity|GO:0008601||IEA  go_component protein phosphatase type 2A complex|GO:0000159||ISS  go_process signal transduction|GO:0007165||ISS  go_function protein phosphatase type 2A regulator activity|GO:0008601||ISS  product serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B , putative  note serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B , putative; FUNCTIONS IN: protein phosphatase type 2A regulator activity; INVOLVED IN: signal transduction; LOCATED IN: protein phosphatase type 2A complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2A, regulatory B subunit, B56 (InterPro:IPR002554); BEST Arabidopsis thaliana protein match is: ATB  GAMMA; poly(U) binding / protein phosphatase type 2A regulator (TAIR:AT4G15415.2); Has 900 Blast hits to 891 proteins in 146 species: Archae - 2; Bacteria - 7; Metazoa - 506; Fungi - 102; Plants - 157; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink).  protein_id AT3G21650.1p  transcript_id AT3G21650.1  protein_id AT3G21650.1p  transcript_id AT3G21650.1  
At3g21660	chr3:007626616	0.0	C/7626616-7626654,7626213-7626538,7625871-7626051,7625654-7625740,7625515-7625573,7625084-7625291,7624924-7624998,7624495-7624827	AT3G21660.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product UBX domain-containing protein  note UBX domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012), SEP (InterPro:IPR012989); BEST Arabidopsis thaliana protein match is: PUX5 (Arabidopsis thaliana serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma); protein binding (TAIR:AT4G15410.1); Has 901 Blast hits to 569 proteins in 154 species: Archae - 0; Bacteria - 31; Metazoa - 481; Fungi - 168; Plants - 100; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).  protein_id AT3G21660.1p  transcript_id AT3G21660.1  protein_id AT3G21660.1p  transcript_id AT3G21660.1  
At3g21670	chr3:007628952	0.0	C/7628952-7628954,7628751-7628868,7628455-7628672,7626942-7628375	AT3G21670.1  CDS  gene_syn MIL23.23  go_component membrane|GO:0016020||IEA  go_process oligopeptide transport|GO:0006857||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function transporter activity|GO:0005215||ISS  product nitrate transporter (NTP3)  note nitrate transporter (NTP3); FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter (NTP2) (TAIR:AT2G26690.1); Has 4540 Blast hits to 4334 proteins in 779 species: Archae - 0; Bacteria - 2064; Metazoa - 555; Fungi - 289; Plants - 1121; Viruses - 0; Other Eukaryotes - 511 (source: NCBI BLink).  protein_id AT3G21670.1p  transcript_id AT3G21670.1  protein_id AT3G21670.1p  transcript_id AT3G21670.1  
At3g21680	chr3:007633494	0.0	C/7633494-7633853	AT3G21680.1  CDS  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, root, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 6 Blast hits to 6 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G21680.1p  transcript_id AT3G21680.1  protein_id AT3G21680.1p  transcript_id AT3G21680.1  
At3g21690	chr3:007638750	0.0	W/7638750-7639070,7639195-7639826,7640794-7640850,7641073-7641311,7641406-7641524,7641618-7641704,7641796-7641861	AT3G21690.1  CDS  go_component plasma membrane|GO:0005886|17151019|IDA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: drug transporter activity, antiporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G61890.1); Has 6111 Blast hits to 6057 proteins in 1118 species: Archae - 150; Bacteria - 4001; Metazoa - 121; Fungi - 210; Plants - 709; Viruses - 0; Other Eukaryotes - 920 (source: NCBI BLink).  protein_id AT3G21690.1p  transcript_id AT3G21690.1  protein_id AT3G21690.1p  transcript_id AT3G21690.1  
At3g21700	chr3:007644581	0.0	W/7644581-7644949,7645056-7645179,7645260-7645396,7645835-7645918,7646026-7646190	AT3G21700.3  CDS  gene_syn ATSGP2, SGP2  gene SGP2  function Monomeric G protein. Expressed in root epidermal cells that are destined to become atrichoblasts. Also expressed during pollen development and in the pollen tube tip.  go_component intracellular|GO:0005622||IEA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_function GTP binding|GO:0005525||IEA  product SGP2; GTP binding  note SGP2; FUNCTIONS IN: GTP binding; INVOLVED IN: small GTPase mediated signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Miro-like (InterPro:IPR013684), Small GTPase, Tem1 (InterPro:IPR017231); BEST Arabidopsis thaliana protein match is: SGP1; GTP binding (TAIR:AT5G54840.1); Has 9820 Blast hits to 9813 proteins in 322 species: Archae - 2; Bacteria - 14; Metazoa - 5089; Fungi - 931; Plants - 1196; Viruses - 3; Other Eukaryotes - 2585 (source: NCBI BLink).  protein_id AT3G21700.3p  transcript_id AT3G21700.3  protein_id AT3G21700.3p  transcript_id AT3G21700.3  
At3g21700	chr3:007644581	0.0	W/7644581-7644949,7645056-7645179,7645263-7645396,7645835-7645918,7646026-7646190	AT3G21700.1  CDS  gene_syn ATSGP2, SGP2  gene SGP2  function Monomeric G protein. Expressed in root epidermal cells that are destined to become atrichoblasts. Also expressed during pollen development and in the pollen tube tip.  go_component intracellular|GO:0005622||IEA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_function GTP binding|GO:0005525||IEA  product SGP2; GTP binding  note SGP2; FUNCTIONS IN: GTP binding; INVOLVED IN: small GTPase mediated signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Miro-like (InterPro:IPR013684), Small GTPase, Tem1 (InterPro:IPR017231); BEST Arabidopsis thaliana protein match is: SGP1; GTP binding (TAIR:AT5G54840.1); Has 7844 Blast hits to 7841 proteins in 307 species: Archae - 2; Bacteria - 4; Metazoa - 4064; Fungi - 813; Plants - 1088; Viruses - 3; Other Eukaryotes - 1870 (source: NCBI BLink).  protein_id AT3G21700.1p  transcript_id AT3G21700.1  protein_id AT3G21700.1p  transcript_id AT3G21700.1  
At3g21700	chr3:007644581	0.0	W/7644581-7644949,7645056-7645179,7645263-7645396,7645835-7645954	AT3G21700.2  CDS  gene_syn ATSGP2, SGP2  gene SGP2  function Monomeric G protein. Expressed in root epidermal cells that are destined to become atrichoblasts. Also expressed during pollen development and in the pollen tube tip.  go_component intracellular|GO:0005622||IEA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_function GTP binding|GO:0005525||IEA  product SGP2; GTP binding  note SGP2; FUNCTIONS IN: GTP binding; INVOLVED IN: small GTPase mediated signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Miro-like (InterPro:IPR013684), Small GTPase, Tem1 (InterPro:IPR017231); BEST Arabidopsis thaliana protein match is: SGP1; GTP binding (TAIR:AT5G54840.1); Has 5044 Blast hits to 5041 proteins in 259 species: Archae - 2; Bacteria - 0; Metazoa - 2453; Fungi - 573; Plants - 808; Viruses - 0; Other Eukaryotes - 1208 (source: NCBI BLink).  protein_id AT3G21700.2p  transcript_id AT3G21700.2  protein_id AT3G21700.2p  transcript_id AT3G21700.2  
At3g21710	chr3:007648380	0.0	W/7648380-7648757,7648989-7649060,7649348-7649533	AT3G21710.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 24 Blast hits to 24 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G21710.2p  transcript_id AT3G21710.2  protein_id AT3G21710.2p  transcript_id AT3G21710.2  
At3g21710	chr3:007648380	0.0	W/7648380-7648757,7648989-7649138	AT3G21710.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G21710.1p  transcript_id AT3G21710.1  protein_id AT3G21710.1p  transcript_id AT3G21710.1  
At3g21720	chr3:007655844	0.0	C/7655844-7655873,7655321-7655727,7654095-7654697,7653226-7653818,7652789-7652886	AT3G21720.1  CDS  gene_syn ICL, ISOCITRATE LYASE  gene ICL  function Encodes a glyoxylate cycle enzyme isocitrate lyase (ICL).  go_process metabolic process|GO:0008152||IEA  go_process carboxylic acid metabolic process|GO:0019752||IEA  go_function catalytic activity|GO:0003824||IEA  go_function isocitrate lyase activity|GO:0004451||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function isocitrate lyase activity|GO:0004451||ISS  product ICL (ISOCITRATE LYASE); catalytic/ isocitrate lyase  note ISOCITRATE LYASE (ICL); FUNCTIONS IN: isocitrate lyase activity, catalytic activity; INVOLVED IN: carboxylic acid metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, seed, leaf; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Isocitrate lyase and phosphorylmutase, conserved site (InterPro:IPR018523), Isocitrate lyase (InterPro:IPR006254), Isocitrate lyase and phosphorylmutase (InterPro:IPR000918); Has 7280 Blast hits to 5570 proteins in 811 species: Archae - 84; Bacteria - 3246; Metazoa - 24; Fungi - 305; Plants - 114; Viruses - 0; Other Eukaryotes - 3507 (source: NCBI BLink).  protein_id AT3G21720.1p  transcript_id AT3G21720.1  protein_id AT3G21720.1p  transcript_id AT3G21720.1  
At3g21730	chr3:007661098	0.0	C/7661098-7661179,7660080-7660272,7659761-7659956	AT3G21730.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process folic acid and derivative metabolic process|GO:0006760||IEA  go_function dihydroneopterin aldolase activity|GO:0004150||IEA  go_process folic acid and derivative metabolic process|GO:0006760||ISS  go_function dihydroneopterin aldolase activity|GO:0004150||ISS  product dihydroneopterin aldolase family protein  note dihydroneopterin aldolase family protein; FUNCTIONS IN: dihydroneopterin aldolase activity; INVOLVED IN: folic acid and derivative metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Dihydroneopterin aldolase (InterPro:IPR006157), Dihydroneopterin aldolase family (InterPro:IPR006156); BEST Arabidopsis thaliana protein match is: dihydroneopterin aldolase, putative (TAIR:AT3G11750.1); Has 1648 Blast hits to 1648 proteins in 576 species: Archae - 4; Bacteria - 1123; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 461 (source: NCBI BLink).  protein_id AT3G21730.2p  transcript_id AT3G21730.2  protein_id AT3G21730.2p  transcript_id AT3G21730.2  
At3g21730	chr3:007661098	0.0	C/7661098-7661179,7660080-7660284,7659761-7659956	AT3G21730.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process folic acid and derivative metabolic process|GO:0006760||IEA  go_function dihydroneopterin aldolase activity|GO:0004150||IEA  go_process folic acid and derivative metabolic process|GO:0006760||ISS  go_function dihydroneopterin aldolase activity|GO:0004150||ISS  product dihydroneopterin aldolase family protein  note dihydroneopterin aldolase family protein; FUNCTIONS IN: dihydroneopterin aldolase activity; INVOLVED IN: folic acid and derivative metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Dihydroneopterin aldolase (InterPro:IPR006157), Dihydroneopterin aldolase family (InterPro:IPR006156); BEST Arabidopsis thaliana protein match is: dihydroneopterin aldolase, putative (TAIR:AT3G11750.1); Has 1648 Blast hits to 1648 proteins in 576 species: Archae - 4; Bacteria - 1123; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 461 (source: NCBI BLink).  protein_id AT3G21730.1p  transcript_id AT3G21730.1  protein_id AT3G21730.1p  transcript_id AT3G21730.1  
At3g21740	chr3:007663373	0.0	C/7663373-7663638,7662542-7663289	AT3G21740.1  CDS  gene_syn ACCUMULATION OF PHOTOSYSTEM ONE 4, APO4  gene APO4  function ACCUMULATION OF PHOTOSYSTEM ONE 4  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  product APO4 (ACCUMULATION OF PHOTOSYSTEM ONE 4)  note ACCUMULATION OF PHOTOSYSTEM ONE 4 (APO4); INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF794, plant (InterPro:IPR008512); BEST Arabidopsis thaliana protein match is: APO2 (ACCUMULATION OF PHOTOSYSTEM ONE 2) (TAIR:AT5G57930.2); Has 91 Blast hits to 64 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G21740.1p  transcript_id AT3G21740.1  protein_id AT3G21740.1p  transcript_id AT3G21740.1  
At3g21750	chr3:007664565	0.0	W/7664565-7665986	AT3G21750.1  CDS  gene_syn UDP-GLUCOSYL TRANSFERASE 71B1, UGT71B1  gene UGT71B1  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function quercetin 3-O-glucosyltransferase activity|GO:0080043|15352060|IDA  product UGT71B1 (UDP-GLUCOSYL TRANSFERASE 71B1); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring glycosyl groups  note UDP-GLUCOSYL TRANSFERASE 71B1 (UGT71B1); FUNCTIONS IN: quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT3G21760.1); Has 4700 Blast hits to 4677 proteins in 288 species: Archae - 0; Bacteria - 139; Metazoa - 1878; Fungi - 18; Plants - 2610; Viruses - 24; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT3G21750.1p  transcript_id AT3G21750.1  protein_id AT3G21750.1p  transcript_id AT3G21750.1  
At3g21755	chr3:007666808	0.0	C/7666808-7668565	AT3G21755.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT3G21760  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G21755.1  
At3g21755	chr3:007666867	0.0	C/7666867-7668552	AT3G21755.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT3G21760  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G21755.2  
At3g21760	chr3:007667099	0.0	W/7667099-7668556	AT3G21760.1  CDS  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT71B5 (UDP-GLUCOSYL TRANSFERASE 71B5); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT4G15280.1); Has 4683 Blast hits to 4661 proteins in 269 species: Archae - 0; Bacteria - 81; Metazoa - 1894; Fungi - 12; Plants - 2670; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT3G21760.1p  transcript_id AT3G21760.1  protein_id AT3G21760.1p  transcript_id AT3G21760.1  
At3g21770	chr3:007673345	0.0	W/7673345-7673566,7673733-7673921,7674004-7674166,7674246-7674661	AT3G21770.1  CDS  go_component cell wall|GO:0005618|14595688|IDA  go_component cell wall|GO:0005618|16287169|IDA  go_process response to oxidative stress|GO:0006979||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_function peroxidase activity|GO:0004601||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product peroxidase 30 (PER30) (P30) (PRXR9)  note peroxidase 30 (PER30) (P30) (PRXR9); FUNCTIONS IN: transferase activity, transferring glycosyl groups, peroxidase activity; INVOLVED IN: response to oxidative stress; LOCATED IN: cell wall, nucleus, cytoplasm, plant-type cell wall; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: RCI3 (RARE COLD INDUCIBLE GENE 3); peroxidase (TAIR:AT1G05260.1); Has 2896 Blast hits to 2881 proteins in 211 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 79; Plants - 2778; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT3G21770.1p  transcript_id AT3G21770.1  protein_id AT3G21770.1p  transcript_id AT3G21770.1  
At3g21780	chr3:007675051	0.0	C/7675051-7676490	AT3G21780.1  CDS  gene_syn UDP-glucosyl transferase 71B6, UGT71B6  gene UGT71B6  function Encodes a protein with UDP-glucosyl transferase activity that was shown to preferentially glucosylates abscisic acid (ABA), and not its catabolites. Moreover, UGT71B6 was shown to have a strict preference for the naturally-occurring ABA enantiomer, (+)-ABA, and not its  unnatural  relative, (-)-ABA. This is in contrast to the other identified UGT genes catalyzing the glucosylation of ABA which were shown to accept both stereoisomers as substrates.  go_component membrane|GO:0016020|17432890|IDA  go_process response to osmotic stress|GO:0006970|16623908|IEP  go_process response to salt stress|GO:0009651|16623908|IEP  go_process response to abscisic acid stimulus|GO:0009737|16623908|IEP  go_process abscisic acid catabolic process|GO:0046345|16083885|TAS  go_function UDP-glycosyltransferase activity|GO:0008194|16083885|IDA  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function abscisic acid glucosyltransferase activity|GO:0010294||IDA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UGT71B6 (UDP-glucosyl transferase 71B6); UDP-glycosyltransferase/ abscisic acid glucosyltransferase/ transferase, transferring glycosyl groups  note UDP-glucosyl transferase 71B6 (UGT71B6); FUNCTIONS IN: UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: response to salt stress, response to abscisic acid stimulus, response to osmotic stress, abscisic acid catabolic process; LOCATED IN: membrane; EXPRESSED IN: stem, rosette leaf, cultured cell, stamen, leaf; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT3G21790.1); Has 4323 Blast hits to 4304 proteins in 284 species: Archae - 0; Bacteria - 112; Metazoa - 1491; Fungi - 22; Plants - 2661; Viruses - 12; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT3G21780.1p  transcript_id AT3G21780.1  protein_id AT3G21780.1p  transcript_id AT3G21780.1  
At3g21781	chr3:007676054	0.0	W/7676054-7676384	AT3G21781.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT3G21780  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G21781.1  
At3g21790	chr3:007676927	0.0	C/7676927-7678414	AT3G21790.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function transferase activity, transferring hexosyl groups|GO:0016758||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT71B8 (UDP-GLUCOSYL TRANSFERASE 71B8); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ quercetin 4 -O-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT3G21800.1); Has 4493 Blast hits to 4475 proteins in 265 species: Archae - 0; Bacteria - 82; Metazoa - 1698; Fungi - 10; Plants - 2668; Viruses - 11; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT3G21790.1p  transcript_id AT3G21790.1  protein_id AT3G21790.1p  transcript_id AT3G21790.1  
At3g21791	chr3:007678715	0.0	C/7678715-7679271	AT3G21791.1  pseudogenic_transcript  pseudo  function Pseudogene of AT3G21790; UDP-glucoronosyl/UDP-glucosyl transferase family protein  
At3g21800	chr3:007680243	0.0	C/7680243-7681685	AT3G21800.1  CDS  gene_syn UDP-GLUCOSYL TRANSFERASE 71B8, UGT71B8  gene UGT71B8  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function quercetin 3-O-glucosyltransferase activity|GO:0080043|15352060|IDA  go_function quercetin 4 -O-glucosyltransferase activity|GO:0080046|15352060|IDA  product UGT71B8 (UDP-GLUCOSYL TRANSFERASE 71B8); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ quercetin 4 -O-glucosyltransferase/ transferase, transferring glycosyl groups  note UDP-GLUCOSYL TRANSFERASE 71B8 (UGT71B8); FUNCTIONS IN: quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, quercetin 4 -O-glucosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT3G21790.1); Has 4348 Blast hits to 4331 proteins in 255 species: Archae - 0; Bacteria - 65; Metazoa - 1595; Fungi - 9; Plants - 2650; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT3G21800.1p  transcript_id AT3G21800.1  protein_id AT3G21800.1p  transcript_id AT3G21800.1  
At3g21805	chr3:007682362	0.0	W/7682362-7682452	AT3G21805.1  snoRNA  gene_syn 60487.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT3G21805.1  
At3g21810	chr3:007684852	0.0	W/7684852-7684984,7686174-7686317,7686441-7686474,7686581-7686722,7686858-7686914,7686991-7687088,7687220-7687291,7687374-7687600,7687685-7687884,7688047-7688184,7688292-7688360	AT3G21810.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc finger (CCCH-type) family protein  note zinc finger (CCCH-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); Has 758 Blast hits to 705 proteins in 126 species: Archae - 7; Bacteria - 25; Metazoa - 362; Fungi - 44; Plants - 55; Viruses - 2; Other Eukaryotes - 263 (source: NCBI BLink).  protein_id AT3G21810.1p  transcript_id AT3G21810.1  protein_id AT3G21810.1p  transcript_id AT3G21810.1  
At3g21820	chr3:007691361	0.0	C/7691361-7691444,7691172-7691247,7690678-7691077,7690488-7690600,7690373-7690404,7690087-7690220,7689815-7689902,7689630-7689678,7689482-7689536,7689336-7689405,7689180-7689249,7689006-7689082,7688831-7688887,7688629-7688745	AT3G21820.1  CDS  gene_syn ATXR2, HISTONE-LYSINE N-METHYLTRANSFERASE ATXR2, SDG36, SET DOMAIN PROTEIN 36  gene ATXR2  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product ATXR2 (HISTONE-LYSINE N-METHYLTRANSFERASE ATXR2); zinc ion binding  note HISTONE-LYSINE N-METHYLTRANSFERASE ATXR2 (ATXR2); FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), SET (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: SDG37; zinc ion binding (TAIR:AT2G17900.1); Has 866 Blast hits to 863 proteins in 141 species: Archae - 0; Bacteria - 4; Metazoa - 316; Fungi - 209; Plants - 150; Viruses - 0; Other Eukaryotes - 187 (source: NCBI BLink).  protein_id AT3G21820.1p  transcript_id AT3G21820.1  protein_id AT3G21820.1p  transcript_id AT3G21820.1  
At3g21830	chr3:007693481	0.0	C/7693481-7693939	AT3G21830.1  CDS  gene_syn ARABIDOPSIS SKP1-LIKE 8, ASK8  gene ASK8  go_function protein binding|GO:0005515||IEA  go_component SCF ubiquitin ligase complex|GO:0019005|12970487|ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|12970487|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product ASK8 (ARABIDOPSIS SKP1-LIKE 8); protein binding / ubiquitin-protein ligase  note ARABIDOPSIS SKP1-LIKE 8 (ASK8); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: SCF ubiquitin ligase complex; EXPRESSED IN: fruit; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: ASK9 (ARABIDOPSIS SKP1-LIKE 9); protein binding / ubiquitin-protein ligase (TAIR:AT3G21850.1); Has 1045 Blast hits to 1043 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 455; Fungi - 108; Plants - 352; Viruses - 11; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT3G21830.1p  transcript_id AT3G21830.1  protein_id AT3G21830.1p  transcript_id AT3G21830.1  
At3g21840	chr3:007695490	0.0	C/7695490-7695867	AT3G21840.1  CDS  gene_syn ARABIDOPSIS SKP1-LIKE 7, ASK7  gene ASK7  go_function protein binding|GO:0005515||IEA  go_component SCF ubiquitin ligase complex|GO:0019005|12970487|ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|12970487|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product ASK7 (ARABIDOPSIS SKP1-LIKE 7); protein binding / ubiquitin-protein ligase  note ARABIDOPSIS SKP1-LIKE 7 (ASK7); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: SCF ubiquitin ligase complex; EXPRESSED IN: leaf whorl, male gametophyte, fruit, leaf; EXPRESSED DURING: LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: ASK8 (ARABIDOPSIS SKP1-LIKE 8); protein binding / ubiquitin-protein ligase (TAIR:AT3G21830.1); Has 993 Blast hits to 991 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 447; Fungi - 104; Plants - 337; Viruses - 7; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT3G21840.1p  transcript_id AT3G21840.1  protein_id AT3G21840.1p  transcript_id AT3G21840.1  
At3g21850	chr3:007697089	0.0	C/7697089-7697550	AT3G21850.1  CDS  gene_syn ARABIDOPSIS SKP1-LIKE 9, ASK9  gene ASK9  function one of Arabidopsis SKP1 homologues  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of mitotic cell cycle|GO:0007346|10500191|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product ASK9 (ARABIDOPSIS SKP1-LIKE 9); protein binding / ubiquitin-protein ligase  note ARABIDOPSIS SKP1-LIKE 9 (ASK9); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: regulation of mitotic cell cycle; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: ASK10 (ARABIDOPSIS SKP1-LIKE 10); protein binding / ubiquitin-protein ligase (TAIR:AT3G21860.1); Has 1095 Blast hits to 1093 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 491; Fungi - 110; Plants - 360; Viruses - 11; Other Eukaryotes - 123 (source: NCBI BLink).  protein_id AT3G21850.1p  transcript_id AT3G21850.1  protein_id AT3G21850.1p  transcript_id AT3G21850.1  
At3g21860	chr3:007699777	0.0	C/7699777-7700235	AT3G21860.1  CDS  gene_syn ARABIDOPSIS SKP1-LIKE 10, ASK10  gene ASK10  go_function protein binding|GO:0005515||IEA  go_component SCF ubiquitin ligase complex|GO:0019005|12970487|ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|12970487|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product ASK10 (ARABIDOPSIS SKP1-LIKE 10); protein binding / ubiquitin-protein ligase  note ARABIDOPSIS SKP1-LIKE 10 (ASK10); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: SCF ubiquitin ligase complex; EXPRESSED IN: whole plant; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: ASK9 (ARABIDOPSIS SKP1-LIKE 9); protein binding / ubiquitin-protein ligase (TAIR:AT3G21850.1); Has 1074 Blast hits to 1071 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 471; Fungi - 112; Plants - 353; Viruses - 11; Other Eukaryotes - 127 (source: NCBI BLink).  protein_id AT3G21860.1p  transcript_id AT3G21860.1  protein_id AT3G21860.1p  transcript_id AT3G21860.1  
At3g21865	chr3:007703099	0.0	C/7703099-7703218,7702589-7702840,7702465-7702512,7702296-7702352,7702116-7702217,7701744-7701809,7701490-7701591,7701308-7701412	AT3G21865.1  CDS  gene_syn PEX22, peroxin 22  gene PEX22  function Interacts with PEX4 in a yeast two-hybrid. The PEX4 and PEX22 pair may be important during the remodeling of peroxisome matrix contents as glyoxysomes transition to leaf peroxisomes.  go_component cellular_component|GO:0005575||ND  go_process peroxisome organization|GO:0007031|16272432|IMP  go_function protein binding|GO:0005515|16272432|IPI  product PEX22 (peroxin 22); protein binding  note peroxin 22 (PEX22); FUNCTIONS IN: protein binding; INVOLVED IN: peroxisome organization; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 58 Blast hits to 58 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT3G21865.1p  transcript_id AT3G21865.1  protein_id AT3G21865.1p  transcript_id AT3G21865.1  
At3g21870	chr3:007704428	0.0	C/7704428-7704813,7703927-7704173	AT3G21870.1  CDS  gene_syn CYCP2;1, cyclin p2;1  gene CYCP2;1  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase activity|GO:0004693||ISS  product CYCP2;1 (cyclin p2;1); cyclin-dependent protein kinase  note cyclin p2;1 (CYCP2;1); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Negative regulatory factor PREG (InterPro:IPR012389), Cyclin-like (InterPro:IPR011028), Cyclin, N-terminal (InterPro:IPR006671), Cyclin-related 2 (InterPro:IPR013922), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCP4;1 (cyclin p4;1); cyclin-dependent protein kinase (TAIR:AT2G44740.1); Has 933 Blast hits to 925 proteins in 163 species: Archae - 0; Bacteria - 16; Metazoa - 187; Fungi - 381; Plants - 128; Viruses - 0; Other Eukaryotes - 221 (source: NCBI BLink).  protein_id AT3G21870.1p  transcript_id AT3G21870.1  protein_id AT3G21870.1p  transcript_id AT3G21870.1  
At3g21880	chr3:007706748	0.0	W/7706748-7707233,7707313-7707540,7707627-7707877,7707964-7708093	AT3G21880.1  CDS  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (B-box type) family protein  note zinc finger (B-box type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: zinc finger (B-box type) family protein (TAIR:AT4G15250.1); Has 1680 Blast hits to 1221 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1615; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT3G21880.1p  transcript_id AT3G21880.1  protein_id AT3G21880.1p  transcript_id AT3G21880.1  
At3g21890	chr3:007709298	0.0	C/7709298-7709663	AT3G21890.1  CDS  go_component intracellular|GO:0005622||IEA  go_process response to UV-B|GO:0010224|18266923|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (B-box type) family protein  note zinc finger (B-box type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding; INVOLVED IN: response to UV-B, regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT4G15248.1); Has 963 Blast hits to 745 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 953; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT3G21890.1p  transcript_id AT3G21890.1  protein_id AT3G21890.1p  transcript_id AT3G21890.1  
At3g21900	chr3:007715393	0.0	W/7715393-7715731,7715930-7716343	AT3G21900.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product receptor-like protein kinase-related  note receptor-like protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase-related (TAIR:AT3G21910.1); Has 804 Blast hits to 783 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 804; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G21900.1p  transcript_id AT3G21900.1  protein_id AT3G21900.1p  transcript_id AT3G21900.1  
At3g21910	chr3:007717372	0.0	W/7717372-7717716,7717914-7718405	AT3G21910.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product receptor-like protein kinase-related  note receptor-like protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: pollen coat receptor kinase, putative (TAIR:AT3G21920.1); Has 890 Blast hits to 871 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 890; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G21910.1p  transcript_id AT3G21910.1  protein_id AT3G21910.1p  transcript_id AT3G21910.1  
At3g21920	chr3:007720692	0.0	W/7720692-7721048,7721262-7721741	AT3G21920.1  CDS  go_component extracellular region|GO:0005576|11431566|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pollen coat receptor kinase, putative  note pollen coat receptor kinase, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: extracellular region; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase-related (TAIR:AT3G21930.1); Has 822 Blast hits to 807 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 822; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G21920.1p  transcript_id AT3G21920.1  protein_id AT3G21920.1p  transcript_id AT3G21920.1  
At3g21930	chr3:007723223	0.0	W/7723223-7723645,7723859-7724338	AT3G21930.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product receptor-like protein kinase-related  note receptor-like protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: pollen coat receptor kinase, putative (TAIR:AT3G21920.1); Has 818 Blast hits to 803 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 818; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G21930.1p  transcript_id AT3G21930.1  protein_id AT3G21930.1p  transcript_id AT3G21930.1  
At3g21933	chr3:007725510	0.0	W/7725510-7726493	AT3G21933.1  pseudogenic_transcript  pseudo  gene_syn MZN24.6  note pseudogene, similar to receptor-like protein kinase homolog RK20-1, contains Pfam profile: PF01657 Domain of unknown function; blastp match of 30% identity and 1.1e-14 P-value to GP|4530126|gb|AAD21872.1||AF078082 receptor-like protein kinase homolog RK20-1 {Phaseolus vulgaris}  
At3g21937	chr3:007727543	0.0	W/7727543-7728522	AT3G21937.1  pseudogenic_transcript  pseudo  gene_syn MZN24.7  note pseudogene, similar to OJ1058_A12.21, contains Pfam profile: PF01657 Domain of unknown function; blastp match of 36% identity and 4.5e-26 P-value to GP|28411826|dbj|BAC57301.1||AP003863 OJ1058_A12.21 {Oryza sativa (japonica cultivar-group)}  
At3g21940	chr3:007729806	0.0	W/7729806-7730161,7730700-7731171	AT3G21940.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product receptor protein kinase-related  note receptor protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: beta-galactosidase (TAIR:AT3G21960.2); Has 849 Blast hits to 827 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 849; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G21940.1p  transcript_id AT3G21940.1  protein_id AT3G21940.1p  transcript_id AT3G21940.1  
At3g21945	chr3:007732458	0.0	W/7732458-7732589,7732954-7733280	AT3G21945.1  CDS  gene_syn MZN24.9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase-related (TAIR:AT2G31620.1).  protein_id AT3G21945.1p  transcript_id AT3G21945.1  protein_id AT3G21945.1p  transcript_id AT3G21945.1  
At3g21950	chr3:007734396	0.0	W/7734396-7734461,7735065-7735718,7735815-7736201	AT3G21950.1  CDS  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  product methyltransferase  note methyltransferase; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine:carboxyl methyltransferase family protein (TAIR:AT5G38020.1); Has 604 Blast hits to 596 proteins in 90 species: Archae - 0; Bacteria - 36; Metazoa - 12; Fungi - 1; Plants - 446; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).  protein_id AT3G21950.1p  transcript_id AT3G21950.1  protein_id AT3G21950.1p  transcript_id AT3G21950.1  
At3g21960	chr3:007737156	0.0	W/7737156-7737497,7737702-7738117,7738513-7738561,7738772-7738865,7739118-7739542	AT3G21960.2  CDS  go_component beta-galactosidase complex|GO:0009341||IEA  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  product beta-galactosidase  note beta-galactosidase; FUNCTIONS IN: beta-galactosidase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system, beta-galactosidase complex; EXPRESSED IN: leaf whorl, petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944), Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase-related (TAIR:AT2G31620.1).  protein_id AT3G21960.2p  transcript_id AT3G21960.2  protein_id AT3G21960.2p  transcript_id AT3G21960.2  
At3g21960	chr3:007737156	0.0	W/7737156-7737497,7737702-7738117,7739011-7739053,7739118-7739147	AT3G21960.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase-related (TAIR:AT2G31620.1); Has 915 Blast hits to 891 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 915; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G21960.1p  transcript_id AT3G21960.1  protein_id AT3G21960.1p  transcript_id AT3G21960.1  
At3g21965	chr3:007740234	0.0	W/7740234-7741147	AT3G21965.1  pseudogenic_transcript  pseudo  gene_syn MZN24.13  note pseudogene, similar to OJ1058_A12.21, contains Pfam profile: PF01657 Domain of unknown function; blastp match of 34% identity and 2.8e-22 P-value to GP|28411826|dbj|BAC57301.1||AP003863 OJ1058_A12.21 {Oryza sativa (japonica cultivar-group)}  
At3g21970	chr3:007742459	0.0	W/7742459-7742803,7743031-7743480	AT3G21970.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product receptor-like protein kinase-related  note receptor-like protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, flower, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: protein serine/threonine kinase (TAIR:AT3G29040.1); Has 850 Blast hits to 835 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 850; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G21970.1p  transcript_id AT3G21970.1  protein_id AT3G21970.1p  transcript_id AT3G21970.1  
At3g21980	chr3:007745143	0.0	W/7745143-7745466,7745808-7746161	AT3G21980.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product receptor-like protein kinase-related  note receptor-like protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase-related (TAIR:AT3G21990.1); Has 728 Blast hits to 722 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 728; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G21980.1p  transcript_id AT3G21980.1  protein_id AT3G21980.1p  transcript_id AT3G21980.1  
At3g21985	chr3:007746953	0.0	W/7746953-7748137	AT3G21985.1  pseudogenic_transcript  pseudo  gene_syn MZN24.16  note pseudogene, similar to putative receptor-like serine-threonine protein kinase, contains Pfam profile: PF01657 Domain of unknown function; blastp match of 36% identity and 1.9e-19 P-value to GP|18076589|emb|CAC83607.1||AJ306629 putative receptor-like serine-threonine protein kinase {Solanum tuberosum}  
At3g21990	chr3:007749413	0.0	W/7749413-7749739,7749976-7750419	AT3G21990.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product receptor-like protein kinase-related  note receptor-like protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: lipase (TAIR:AT4G20670.1); Has 918 Blast hits to 900 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 918; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G21990.1p  transcript_id AT3G21990.1  protein_id AT3G21990.1p  transcript_id AT3G21990.1  
At3g22000	chr3:007751844	0.0	W/7751844-7752185,7752645-7753124	AT3G22000.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product receptor-like protein kinase-related  note receptor-like protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase-related (TAIR:AT4G20680.1); Has 879 Blast hits to 859 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 879; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G22000.1p  transcript_id AT3G22000.1  protein_id AT3G22000.1p  transcript_id AT3G22000.1  
At3g22010	chr3:007754311	0.0	W/7754311-7754660,7755321-7755762	AT3G22010.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product receptor-like protein kinase-related  note receptor-like protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase-related (TAIR:AT4G20680.1); Has 854 Blast hits to 844 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 854; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G22010.1p  transcript_id AT3G22010.1  protein_id AT3G22010.1p  transcript_id AT3G22010.1  
At3g22020	chr3:007756577	0.0	W/7756577-7756807,7757006-7757372,7757466-7757491	AT3G22020.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase-related (TAIR:AT3G22040.1); Has 774 Blast hits to 762 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 774; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G22020.1p  transcript_id AT3G22020.1  protein_id AT3G22020.1p  transcript_id AT3G22020.1  
At3g22022	chr3:007757829	0.0	W/7757829-7758032	AT3G22022.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G22022.1p  transcript_id AT3G22022.1  protein_id AT3G22022.1p  transcript_id AT3G22022.1  
At3g22030	chr3:007759317	0.0	W/7759317-7759645,7760306-7760738	AT3G22030.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product receptor-like protein kinase-related  note receptor-like protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase-related (TAIR:AT3G22040.1); Has 556 Blast hits to 553 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 556; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G22030.1p  transcript_id AT3G22030.1  protein_id AT3G22030.1p  transcript_id AT3G22030.1  
At3g22040	chr3:007761807	0.0	W/7761807-7762136,7762232-7762675	AT3G22040.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product receptor-like protein kinase-related  note receptor-like protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase-related (TAIR:AT3G22050.1); Has 841 Blast hits to 826 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 841; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G22040.1p  transcript_id AT3G22040.1  protein_id AT3G22040.1p  transcript_id AT3G22040.1  
At3g22050	chr3:007764131	0.0	W/7764131-7764463,7764700-7765143	AT3G22050.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product receptor-like protein kinase-related  note receptor-like protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase-related (TAIR:AT3G22040.1); Has 857 Blast hits to 842 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 857; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G22050.1p  transcript_id AT3G22050.1  protein_id AT3G22050.1p  transcript_id AT3G22050.1  
At3g22053	chr3:007767433	0.0	W/7767433-7767767,7768075-7768115,7768226-7768299	AT3G22053.1  CDS  gene_syn MZN24.24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: receptor-like protein kinase-related (TAIR:AT3G22030.1).  protein_id AT3G22053.1p  transcript_id AT3G22053.1  protein_id AT3G22053.1p  transcript_id AT3G22053.1  
At3g22057	chr3:007769346	0.0	W/7769346-7769549,7769631-7769690,7770001-7770261	AT3G22057.1  CDS  gene_syn MZN24.25  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: receptor-like protein kinase-related (TAIR:AT3G22050.1).  protein_id AT3G22057.1p  transcript_id AT3G22057.1  protein_id AT3G22057.1p  transcript_id AT3G22057.1  
At3g22060	chr3:007771065	0.0	W/7771065-7771391,7771706-7772137	AT3G22060.1  CDS  function contains Pfam profile: PF01657 Domain of unknown function that is usually associated with protein kinase domain Pfam:PF00069, however this protein does not have the protein kinase domain  go_component cell wall|GO:0005618|15593128|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_process response to abscisic acid stimulus|GO:0009737|16258012|IEP  go_function molecular_function|GO:0003674||ND  product receptor protein kinase-related  note receptor protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: cell wall, vacuole; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase-related (TAIR:AT3G58310.1); Has 1061 Blast hits to 953 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1061; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G22060.1p  transcript_id AT3G22060.1  protein_id AT3G22060.1p  transcript_id AT3G22060.1  
At3g22072	chr3:007775329	0.0	W/7775329-7776207	AT3G22072.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT3G22070  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G22072.1  
At3g22070	chr3:007775530	0.0	C/7775530-7776066	AT3G22070.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product proline-rich family protein  note proline-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, inflorescence meristem, flower, root, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; Has 85546 Blast hits to 34495 proteins in 1407 species: Archae - 282; Bacteria - 13849; Metazoa - 29310; Fungi - 9755; Plants - 11418; Viruses - 3002; Other Eukaryotes - 17930 (source: NCBI BLink).  protein_id AT3G22070.1p  transcript_id AT3G22070.1  protein_id AT3G22070.1p  transcript_id AT3G22070.1  
At3g22080	chr3:007781576	0.0	C/7781576-7781718,7781121-7781293,7780718-7780892,7780476-7780639,7780135-7780289,7779047-7779243,7778735-7778907,7778347-7778629,7778110-7778276,7777818-7777975	AT3G22080.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT2G15710.1); Has 782 Blast hits to 451 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 82; Fungi - 12; Plants - 665; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT3G22080.1p  transcript_id AT3G22080.1  protein_id AT3G22080.1p  transcript_id AT3G22080.1  
At3g22090	chr3:007782956	0.0	W/7782956-7783121,7783230-7783462	AT3G22090.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G71470.1); Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G22090.1p  transcript_id AT3G22090.1  protein_id AT3G22090.1p  transcript_id AT3G22090.1  
At3g22100	chr3:007783711	0.0	C/7783711-7784469	AT3G22100.1  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); Has 133 Blast hits to 133 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 131; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G22100.1p  transcript_id AT3G22100.1  protein_id AT3G22100.1p  transcript_id AT3G22100.1  
At3g22104	chr3:007789814	0.0	W/7789814-7789879,7790636-7791721,7791811-7792179	AT3G22104.1  CDS  go_process response to light stimulus|GO:0009416||IEA  go_function signal transducer activity|GO:0004871||IEA  go_function protein binding|GO:0005515||IEA  product phototropic-responsive NPH3 protein-related  note phototropic-responsive NPH3 protein-related; FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: response to light stimulus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: phototropic-responsive NPH3 family protein (TAIR:AT3G19850.1); Has 443 Blast hits to 434 proteins in 27 species: Archae - 0; Bacteria - 4; Metazoa - 28; Fungi - 3; Plants - 386; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT3G22104.1p  transcript_id AT3G22104.1  protein_id AT3G22104.1p  transcript_id AT3G22104.1  
At3g22110	chr3:007792819	0.0	C/7792819-7793571	AT3G22110.1  CDS  gene_syn 20S PROTEASOME SUBUNIT PAC1, PAC1  gene PAC1  function Encodes the alpha-3 subunit of 20s proteasome.  go_component vacuole|GO:0005773|15215502|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function endopeptidase activity|GO:0004175||IEA  go_function threonine-type endopeptidase activity|GO:0004298||IEA  go_component proteasome core complex|GO:0005839|9373170|TAS  go_component proteasome core complex|GO:0005839|9611183|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_function peptidase activity|GO:0008233||ISS  product PAC1; endopeptidase/ peptidase/ threonine-type endopeptidase  note PAC1; FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: response to cadmium ion, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, cytosolic ribosome, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome alpha-subunit, conserved site (InterPro:IPR000426), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: PAE2; endopeptidase/ peptidase/ threonine-type endopeptidase (TAIR:AT3G14290.1); Has 5222 Blast hits to 5219 proteins in 380 species: Archae - 508; Bacteria - 104; Metazoa - 1931; Fungi - 1189; Plants - 614; Viruses - 0; Other Eukaryotes - 876 (source: NCBI BLink).  protein_id AT3G22110.1p  transcript_id AT3G22110.1  protein_id AT3G22110.1p  transcript_id AT3G22110.1  
At3g22120	chr3:007795283	0.0	C/7795283-7796287	AT3G22120.1  CDS  gene_syn CELL WALL-PLASMA MEMBRANE LINKER PROTEIN, CWLP  gene CWLP  function cell wall-plasma membrane linker protein homolog (CWLP)  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product CWLP (CELL WALL-PLASMA MEMBRANE LINKER PROTEIN); lipid binding  note CELL WALL-PLASMA MEMBRANE LINKER PROTEIN (CWLP); FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: lipid binding / structural constituent of cell wall (TAIR:AT4G15160.2); Has 283099 Blast hits to 74345 proteins in 2330 species: Archae - 1418; Bacteria - 64620; Metazoa - 106487; Fungi - 31524; Plants - 28247; Viruses - 8615; Other Eukaryotes - 42188 (source: NCBI BLink).  protein_id AT3G22120.1p  transcript_id AT3G22120.1  protein_id AT3G22120.1p  transcript_id AT3G22120.1  
At3g22121	chr3:007795606	0.0	W/7795606-7796327	AT3G22121.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT3G22120  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G22121.1  
At3g22133	chr3:007799042	0.0	W/7799042-7800000	AT3G22133.1  mRNA_TE_gene  pseudo  gene_syn MKA23.4  note Transposable element gene, pseudogene, hypothetical protein, similar to putative non-LTR retroelement reverse transcriptase GB:AAC33226.1 from (Arabidopsis thaliana)  
At3g22136	chr3:007801744	0.0	C/7801744-7802408	AT3G22136.1  mRNA_TE_gene  pseudo  gene_syn MKA23.8  note Transposable element gene, pseudogene, hypothetical protein, similar to putative non-LTR retroelement reverse transcriptase GB:AAD22368 from (Arabidopsis thaliana)  
At3g22142	chr3:007803604	0.0	C/7803604-7808046	AT3G22142.1  CDS  function Encodes a Protease inhibitor/seed storage/LTP family protein  go_process lipid transport|GO:0006869||IEA  go_function structural constituent of cell wall|GO:0005199||IEA  go_component cellular_component|GO:0005575||ND  product structural constituent of cell wall  note structural constituent of cell wall; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: lipid transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770), Extensin-like protein (InterPro:IPR003883); BEST Arabidopsis thaliana protein match is: CWLP (CELL WALL-PLASMA MEMBRANE LINKER PROTEIN); lipid binding (TAIR:AT3G22120.1); Has 837518 Blast hits to 44055 proteins in 1721 species: Archae - 3993; Bacteria - 206601; Metazoa - 284105; Fungi - 83513; Plants - 100325; Viruses - 25537; Other Eukaryotes - 133444 (source: NCBI BLink).  protein_id AT3G22142.1p  transcript_id AT3G22142.1  protein_id AT3G22142.1p  transcript_id AT3G22142.1  
At3g22150	chr3:007813028	0.0	W/7813028-7815490	AT3G22150.1  CDS  go_component chloroplast|GO:0009507||IEA  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G57430.1); Has 17039 Blast hits to 5252 proteins in 171 species: Archae - 2; Bacteria - 4; Metazoa - 101; Fungi - 62; Plants - 16511; Viruses - 0; Other Eukaryotes - 359 (source: NCBI BLink).  protein_id AT3G22150.1p  transcript_id AT3G22150.1  protein_id AT3G22150.1p  transcript_id AT3G22150.1  
At3g22160	chr3:007818148	0.0	C/7818148-7818726	AT3G22160.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product VQ motif-containing protein  note VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: stem, inflorescence meristem, sepal, stamen, leaf; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT4G15120.1); Has 217 Blast hits to 196 proteins in 42 species: Archae - 0; Bacteria - 10; Metazoa - 35; Fungi - 23; Plants - 91; Viruses - 8; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT3G22160.1p  transcript_id AT3G22160.1  protein_id AT3G22160.1p  transcript_id AT3G22160.1  
At3g22170	chr3:007823261	0.0	C/7823261-7825414,7823100-7823156,7822947-7823015,7822804-7822872,7822639-7822707,7822501-7822545,7822359-7822415	AT3G22170.1  CDS  gene_syn FAR-RED ELONGATED HYPOCOTYLS 3, FHY3  gene FHY3  function A component of the PHYA signaling network, mediates the FR-HIR response to far-red light in concert with FAR1.  go_component nucleus|GO:0005634|11889039|IDA  go_component nucleus|GO:0005634|18715961|IDA  go_process circadian rhythm|GO:0007623|17012604|IMP  go_process red, far-red light phototransduction|GO:0009585|11889039|IMP  go_process red or far red light signaling pathway|GO:0010017|18715961|IMP  go_process response to far red light|GO:0010218|18033885|IEP  go_process response to far red light|GO:0010218|18715961|IMP  go_function transcription factor activity|GO:0003700|18033885|IDA  go_function transcription activator activity|GO:0016563|18715961|IDA  product FHY3 (FAR-RED ELONGATED HYPOCOTYLS 3); transcription activator/ transcription factor  note FAR-RED ELONGATED HYPOCOTYLS 3 (FHY3); FUNCTIONS IN: transcription factor activity, transcription activator activity; INVOLVED IN: red or far red light signaling pathway, red, far-red light phototransduction, response to far red light, circadian rhythm; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527), Glycoside hydrolase, family 10 (InterPro:IPR001000); BEST Arabidopsis thaliana protein match is: FAR1 (FAR-RED IMPAIRED RESPONSE 1); transcription activator/ transcription factor (TAIR:AT4G15090.1); Has 864 Blast hits to 794 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 93; Plants - 764; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G22170.1p  transcript_id AT3G22170.1  protein_id AT3G22170.1p  transcript_id AT3G22170.1  
At3g22170	chr3:007823261	0.0	C/7823261-7825414,7823100-7823156,7822947-7823015,7822804-7822872,7822639-7822707,7822501-7822545,7822359-7822415	AT3G22170.2  CDS  gene_syn FAR-RED ELONGATED HYPOCOTYLS 3, FHY3  gene FHY3  function A component of the PHYA signaling network, mediates the FR-HIR response to far-red light in concert with FAR1.  go_component nucleus|GO:0005634|11889039|IDA  go_component nucleus|GO:0005634|18715961|IDA  go_process circadian rhythm|GO:0007623|17012604|IMP  go_process red, far-red light phototransduction|GO:0009585|11889039|IMP  go_process red or far red light signaling pathway|GO:0010017|18715961|IMP  go_process response to far red light|GO:0010218|18033885|IEP  go_process response to far red light|GO:0010218|18715961|IMP  go_function transcription factor activity|GO:0003700|18033885|IDA  go_function transcription activator activity|GO:0016563|18715961|IDA  product FHY3 (FAR-RED ELONGATED HYPOCOTYLS 3); transcription activator/ transcription factor  note FAR-RED ELONGATED HYPOCOTYLS 3 (FHY3); FUNCTIONS IN: transcription factor activity, transcription activator activity; INVOLVED IN: red or far red light signaling pathway, red, far-red light phototransduction, response to far red light, circadian rhythm; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527), Glycoside hydrolase, family 10 (InterPro:IPR001000); BEST Arabidopsis thaliana protein match is: FAR1 (FAR-RED IMPAIRED RESPONSE 1); transcription activator/ transcription factor (TAIR:AT4G15090.1); Has 864 Blast hits to 794 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 93; Plants - 764; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G22170.2p  transcript_id AT3G22170.2  protein_id AT3G22170.2p  transcript_id AT3G22170.2  
At3g22180	chr3:007827190	0.0	W/7827190-7827234,7827352-7827465,7827613-7827993,7828202-7828270,7828350-7828421,7828506-7828634,7828719-7828799,7828998-7829195,7829477-7830508	AT3G22180.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc finger (DHHC type) family protein  note zinc finger (DHHC type) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: zinc finger (DHHC type) family protein (TAIR:AT4G15080.1); Has 3569 Blast hits to 3559 proteins in 180 species: Archae - 0; Bacteria - 0; Metazoa - 1799; Fungi - 424; Plants - 397; Viruses - 0; Other Eukaryotes - 949 (source: NCBI BLink).  protein_id AT3G22180.1p  transcript_id AT3G22180.1  protein_id AT3G22180.1p  transcript_id AT3G22180.1  
At3g22183	chr3:007831129	0.0	W/7831129-7831371	AT3G22183.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G22183.1p  transcript_id AT3G22183.1  protein_id AT3G22183.1p  transcript_id AT3G22183.1  
At3g22190	chr3:007833429	0.0	C/7833429-7833512,7833110-7833331,7832771-7833004,7832556-7832669,7831735-7832209,7831280-7831419	AT3G22190.1  CDS  gene_syn IQ-domain 5, IQD5  gene IQD5  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product IQD5 (IQ-domain 5); calmodulin binding  note IQ-domain 5 (IQD5); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQD6 (IQ-domain 6); calmodulin binding (TAIR:AT2G26180.1); Has 480 Blast hits to 461 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 9; Plants - 439; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT3G22190.1p  transcript_id AT3G22190.1  protein_id AT3G22190.1p  transcript_id AT3G22190.1  
At3g22200	chr3:007835286	0.0	W/7835286-7835330,7835742-7835842,7835940-7836024,7836101-7836173,7836276-7836373,7836522-7836614,7836708-7836781,7836869-7836907,7836995-7837083,7837157-7837233,7837322-7837396,7837498-7837545,7837663-7837746,7837828-7837915,7837998-7838076,7838221-7838314,7838398-7838476,7838580-7838695,7838786-7838863	AT3G22200.1  CDS  gene_syn GABA-T, GAMMA-AMINOBUTYRATE TRANSAMINASE, HER1, HEXENAL RESPONSE1, POLLEN-PISTIL INCOMPATIBILITY 2, POP2  gene POP2  function Genetically redundant with POP3;mediates pollen tube guidance. Double mutants are self sterile; gamma-aminobutyrate transaminase subunit precursor; nuclear gene for mitochondrial product. Encodes gamma-aminobutyrate transaminase that uses pyruvate instead of alpha-ketoglutarate as cosubstrate. Mutations in POP2/HER1 render roots resistant to the inhibitory growth effects of the volatile organic compound E-2-hexenal implicated in plant defense.  go_component plasma membrane|GO:0005886|17151019|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process glutamate decarboxylation to succinate|GO:0006540|12859897|IMP  go_process response to oxidative stress|GO:0006979|12492832|IDA  go_process gamma-aminobutyric acid catabolic process|GO:0009450|12859897|IMP  go_process pollen tube growth|GO:0009860|12859897|IMP  go_process pollen tube growth|GO:0009860||NAS  go_process pollen tube adhesion|GO:0009865|8929415|IMP  go_process response to organic substance|GO:0010033|17971036|IMP  go_process fruit development|GO:0010154|17971036|IMP  go_process pollen tube guidance|GO:0010183|12859897|IMP  go_process beta-alanine catabolic process|GO:0019484|12859897|IMP  go_process shoot system development|GO:0022621|17971036|IMP  go_function 4-aminobutyrate transaminase activity|GO:0003867||ISS  go_function 4-aminobutyrate transaminase activity|GO:0003867||NAS  go_function 4-aminobutyrate:pyruvate transaminase activity|GO:0034387||IDA  product POP2 (POLLEN-PISTIL INCOMPATIBILITY 2); 4-aminobutyrate transaminase/ 4-aminobutyrate:pyruvate transaminase  note POLLEN-PISTIL INCOMPATIBILITY 2 (POP2); FUNCTIONS IN: 4-aminobutyrate:pyruvate transaminase activity, 4-aminobutyrate transaminase activity; INVOLVED IN: in 11 processes; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase class-III (InterPro:IPR005814), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: WIN1 (HOPW1-1-INTERACTING 1); N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase/ catalytic/ pyridoxal phosphate binding / transaminase (TAIR:AT1G80600.1); Has 23692 Blast hits to 23691 proteins in 1613 species: Archae - 417; Bacteria - 12248; Metazoa - 537; Fungi - 581; Plants - 241; Viruses - 14; Other Eukaryotes - 9654 (source: NCBI BLink).  protein_id AT3G22200.1p  transcript_id AT3G22200.1  protein_id AT3G22200.1p  transcript_id AT3G22200.1  
At3g22210	chr3:007839336	0.0	C/7839336-7839431,7839135-7839248	AT3G22210.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 15 Blast hits to 15 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G22210.1p  transcript_id AT3G22210.1  protein_id AT3G22210.1p  transcript_id AT3G22210.1  
At3g22220	chr3:007840552	0.0	C/7840552-7842358,7840262-7840466,7839979-7840172,7839808-7839887	AT3G22220.1  CDS  go_function DNA binding|GO:0003677||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product hAT dimerisation domain-containing protein  note hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021), Protein of unknown function DUF1544 (InterPro:IPR011523); BEST Arabidopsis thaliana protein match is: DNA binding / protein dimerization (TAIR:AT4G15020.2); Has 496 Blast hits to 443 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 490; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G22220.1p  transcript_id AT3G22220.1  protein_id AT3G22220.1p  transcript_id AT3G22220.1  
At3g22220	chr3:007840552	0.0	C/7840552-7842358,7840262-7840466,7839979-7840172,7839808-7839887	AT3G22220.2  CDS  go_function DNA binding|GO:0003677||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product hAT dimerisation domain-containing protein  note hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021), Protein of unknown function DUF1544 (InterPro:IPR011523); BEST Arabidopsis thaliana protein match is: DNA binding / protein dimerization (TAIR:AT4G15020.2); Has 496 Blast hits to 443 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 490; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G22220.2p  transcript_id AT3G22220.2  protein_id AT3G22220.2p  transcript_id AT3G22220.2  
At3g22230	chr3:007844136	0.0	C/7844136-7844543	AT3G22230.1  CDS  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L27 (RPL27B)  note 60S ribosomal protein L27 (RPL27B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L27e, conserved site (InterPro:IPR018262), Ribosomal protein L27e (InterPro:IPR001141); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L27 (RPL27C) (TAIR:AT4G15000.1); Has 603 Blast hits to 603 proteins in 228 species: Archae - 0; Bacteria - 0; Metazoa - 292; Fungi - 102; Plants - 95; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).  protein_id AT3G22230.1p  transcript_id AT3G22230.1  protein_id AT3G22230.1p  transcript_id AT3G22230.1  
At3g22231	chr3:007846533	0.0	C/7846533-7846563,7846268-7846421,7846080-7846140	AT3G22231.1  CDS  gene_syn PATHOGEN AND CIRCADIAN CONTROLLED 1, PCC1  gene PCC1  function Encodes a member of a novel 6 member Arabidopsis gene family. Expression of PCC1 is regulated by the circadian clock and is upregulated in response to both virulent and avirulent strains of Pseudomonas syringae pv. tomato.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_process response to bacterium|GO:0009617||IEP  go_process response to fungus|GO:0009620||IMP  go_function molecular_function|GO:0003674||ND  product PCC1 (PATHOGEN AND CIRCADIAN CONTROLLED 1)  note PATHOGEN AND CIRCADIAN CONTROLLED 1 (PCC1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to fungus, response to bacterium; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22235.2); Has 30 Blast hits to 30 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G22231.1p  transcript_id AT3G22231.1  protein_id AT3G22231.1p  transcript_id AT3G22231.1  
At3g22232	chr3:007849841	0.0	W/7849841-7850289	AT3G22232.1  pseudogenic_transcript  pseudo  gene_syn MKA23.1  note pseudogene, putative ribulose 1,5-bisphosphate carboxylase, similar to ribulose 1,5-bisphosphate carboxylase GB:AAA62120 from (Mentzelia decapetala); blastp match of 62% identity and 4.8e-31 P-value to GP|25053482|gb|AAN71865.1||AF297143 ribulose-1,5-bisphosphate carboxylase {Persicaria punctata}  
At3g22234	chr3:007852903	0.0	W/7852903-7853476	AT3G22234.1  pseudogenic_transcript  pseudo  gene_syn MMP21.1  note pseudogene, putative ribulose 1,5-bisphosphate carboxylase, similar to ribulose 1,5-bisphosphate carboxylase GB:AAA82567 from (Ludwigia peruviana); blastp match of 70% identity and 9.6e-53 P-value to GP|17224644|gb|AAL37058.1||AF307471 ribulose-1,5-bisphosphate carboxylase large subunit {Dioscorea pyrenaica}  
At3g22235	chr3:007855584	0.0	C/7855584-7855614,7855334-7855472,7854696-7854741	AT3G22235.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: PCC1 (PATHOGEN AND CIRCADIAN CONTROLLED 1) (TAIR:AT3G22231.1); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G22235.1p  transcript_id AT3G22235.1  protein_id AT3G22235.1p  transcript_id AT3G22235.1  
At3g22235	chr3:007855584	0.0	C/7855584-7855614,7855334-7855472,7854696-7854741	AT3G22235.2  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: PCC1 (PATHOGEN AND CIRCADIAN CONTROLLED 1) (TAIR:AT3G22231.1).  protein_id AT3G22235.2p  transcript_id AT3G22235.2  protein_id AT3G22235.2p  transcript_id AT3G22235.2  
At3g22237	chr3:007859877	0.0	W/7859877-7860331	AT3G22237.1  pseudogenic_transcript  pseudo  gene_syn MKA23.18  note pseudogene, putative ribulose 1,5-bisphosphate carboxylase, similar to ribulose 1,5-bisphosphate carboxylase GB:AAA62120 from (Mentzelia decapetala); blastp match of 62% identity and 4.8e-31 P-value to GP|25053482|gb|AAN71865.1||AF297143 ribulose-1,5-bisphosphate carboxylase {Persicaria punctata}  
At3g22238	chr3:007861995	0.0	W/7861995-7862568	AT3G22238.1  pseudogenic_transcript  pseudo  note pseudogene, putative ribulose 1,5-bisphosphate carboxylase, similar to ribulose 1,5-bisphosphate carboxylase GB:AAA82567 from (Ludwigia peruviana); blastp match of 70% identity and 9.6e-53 P-value to GP|17224644|gb|AAL37058.1||AF307471 ribulose-1,5-bisphosphate carboxylase large subunit {Dioscorea pyrenaica}  
At3g22240	chr3:007864645	0.0	C/7864645-7864675,7864428-7864569,7863788-7863833	AT3G22240.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22235.2); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G22240.1p  transcript_id AT3G22240.1  protein_id AT3G22240.1p  transcript_id AT3G22240.1  
At3g22250	chr3:007867806	0.0	W/7867806-7868271,7869006-7869661,7869790-7870053	AT3G22250.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; EXPRESSED IN: pedicel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT85A1; UDP-glycosyltransferase/ cis-zeatin O-beta-D-glucosyltransferase/ glucuronosyltransferase/ trans-zeatin O-beta-D-glucosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT1G22400.1); Has 4016 Blast hits to 3988 proteins in 290 species: Archae - 0; Bacteria - 83; Metazoa - 1139; Fungi - 11; Plants - 2673; Viruses - 87; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT3G22250.1p  transcript_id AT3G22250.1  protein_id AT3G22250.1p  transcript_id AT3G22250.1  
At3g22260	chr3:007871489	0.0	W/7871489-7871698,7871821-7871894,7872052-7872106,7872202-7872276,7872607-7872680,7872772-7872820,7873013-7873097,7873181-7873237,7873335-7873393	AT3G22260.2  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function cysteine-type peptidase activity|GO:0008234||ISS  product OTU-like cysteine protease family protein  note OTU-like cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: OTU-like cysteine protease family protein (TAIR:AT3G02070.1); Has 586 Blast hits to 576 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 289; Fungi - 51; Plants - 137; Viruses - 8; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT3G22260.2p  transcript_id AT3G22260.2  protein_id AT3G22260.2p  transcript_id AT3G22260.2  
At3g22260	chr3:007871489	0.0	W/7871489-7871698,7871821-7871894,7872052-7872106,7872202-7872276,7872607-7872680,7872772-7872820,7873013-7873097,7873181-7873237,7873350-7873393	AT3G22260.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function cysteine-type peptidase activity|GO:0008234||ISS  product OTU-like cysteine protease family protein  note OTU-like cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: OTU-like cysteine protease family protein (TAIR:AT3G02070.1); Has 587 Blast hits to 577 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 290; Fungi - 51; Plants - 137; Viruses - 8; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT3G22260.1p  transcript_id AT3G22260.1  protein_id AT3G22260.1p  transcript_id AT3G22260.1  
At3g22270	chr3:007874480	0.0	W/7874480-7874534,7874896-7875050,7875152-7875208,7875413-7875488,7875852-7877857	AT3G22270.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14990.1); Has 183 Blast hits to 181 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 88; Fungi - 10; Plants - 60; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT3G22270.1p  transcript_id AT3G22270.1  protein_id AT3G22270.1p  transcript_id AT3G22270.1  
At3g22275	chr3:007879681	0.0	C/7879681-7879754,7879510-7879600,7879207-7879419	AT3G22275.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G22275.1p  transcript_id AT3G22275.1  protein_id AT3G22275.1p  transcript_id AT3G22275.1  
At3g22290	chr3:007882082	0.0	W/7882082-7882169,7882267-7882349,7882859-7882934,7883051-7883118,7883388-7883484,7883899-7884023,7884116-7884199,7884468-7884614,7884795-7884903,7884989-7885108,7885193-7885260	AT3G22290.1  CDS  gene_syn AT3G22280  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1692 (InterPro:IPR012936); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G36050.2); Has 826 Blast hits to 779 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 344; Fungi - 171; Plants - 139; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink).  protein_id AT3G22290.1p  transcript_id AT3G22290.1  protein_id AT3G22290.1p  transcript_id AT3G22290.1  
At3g22300	chr3:007885737	0.0	W/7885737-7886078,7886230-7886613	AT3G22300.1  CDS  gene_syn RIBOSOMAL PROTEIN S10, RPS10  gene RPS10  function Nuclear-encoded gene for mitochondrial ribosomal small subunit protein S10  go_component mitochondrion|GO:0005739|7589523|IDA  go_component mitochondrial small ribosomal subunit|GO:0005763|7589523|ISS  go_component small ribosomal subunit|GO:0015935||ISS  go_process translation|GO:0006412|7589523|ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735|7589523|ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product RPS10 (RIBOSOMAL PROTEIN S10); structural constituent of ribosome  note RIBOSOMAL PROTEIN S10 (RPS10); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: mitochondrion, small ribosomal subunit, mitochondrial small ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S10, bacterial (InterPro:IPR005731), Ribosomal protein S10, conserved site (InterPro:IPR018268), Ribosomal protein S10 (InterPro:IPR001848); BEST Arabidopsis thaliana protein match is: PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1); ATP-dependent helicase/ DNA binding / RNA binding (TAIR:AT3G22310.1); Has 2301 Blast hits to 2301 proteins in 474 species: Archae - 0; Bacteria - 906; Metazoa - 2; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 1315 (source: NCBI BLink).  protein_id AT3G22300.1p  transcript_id AT3G22300.1  protein_id AT3G22300.1p  transcript_id AT3G22300.1  
At3g22310	chr3:007887382	0.0	W/7887382-7887810,7887911-7888038,7888127-7888538,7888672-7888770,7888873-7889097,7889179-7889340,7889429-7889806	AT3G22310.1  CDS  gene_syn ATRH9, PMH1, PUTATIVE MITOCHONDRIAL RNA HELICASE 1, RNA HELICASE 9  gene PMH1  function Sequence similarity ot DEAD-box RNA helicases. Binds RNA and DNA. Involved in drought, salt and cold stress responses.  go_process response to cold|GO:0009409|18725370|IEP  go_process response to water deprivation|GO:0009414|18725370|IMP  go_process response to salt stress|GO:0009651|18725370|IMP  go_function DNA binding|GO:0003677|18725370|IDA  go_function RNA binding|GO:0003723|18725370|IDA  go_function ATP-dependent helicase activity|GO:0008026||ISS  product PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1); ATP-dependent helicase/ DNA binding / RNA binding  note PUTATIVE MITOCHONDRIAL RNA HELICASE 1 (PMH1); FUNCTIONS IN: RNA binding, DNA binding, ATP-dependent helicase activity; INVOLVED IN: response to water deprivation, response to salt stress, response to cold; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: PMH2 (putative mitochondrial RNA helicase 2); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding (TAIR:AT3G22330.1); Has 127159 Blast hits to 59279 proteins in 2461 species: Archae - 875; Bacteria - 44336; Metazoa - 33596; Fungi - 10250; Plants - 9656; Viruses - 1105; Other Eukaryotes - 27341 (source: NCBI BLink).  protein_id AT3G22310.1p  transcript_id AT3G22310.1  protein_id AT3G22310.1p  transcript_id AT3G22310.1  
At3g22320	chr3:007891897	0.0	C/7891897-7892094,7891466-7891645,7891261-7891374,7891045-7891170	AT3G22320.1  CDS  gene_syn ATRPABC24.3, NRPB5, NRPD5, RNA POLYMERASE II FIFTH LARGEST SUBUNIT, A, RPB5A  gene NRPB5  function Non-catalytic subunit common to DNA-dependent RNA polymerases I, II, III and IV; homologous to budding yeast RPB5.  go_process transcription|GO:0006350||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_component DNA-directed RNA polymerase IV complex|GO:0000418|19110459|IPI  go_component DNA-directed RNA polymerase II, core complex|GO:0005665|19110459|IPI  go_process transcription|GO:0006350||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product NRPB5; DNA binding / DNA-directed RNA polymerase  note NRPB5; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: DNA-directed RNA polymerase II, core complex, DNA-directed RNA polymerase IV complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, Rpb5, N-terminal (InterPro:IPR005571), RNA polymerase, subunit H/Rpb5 C-terminal (InterPro:IPR000783), DNA-directed RNA polymerase, RPB5 subunit (InterPro:IPR014381); BEST Arabidopsis thaliana protein match is: RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C); DNA binding / DNA-directed RNA polymerase (TAIR:AT5G57980.1); Has 773 Blast hits to 773 proteins in 251 species: Archae - 165; Bacteria - 0; Metazoa - 133; Fungi - 144; Plants - 72; Viruses - 11; Other Eukaryotes - 248 (source: NCBI BLink).  protein_id AT3G22320.1p  transcript_id AT3G22320.1  protein_id AT3G22320.1p  transcript_id AT3G22320.1  
At3g22330	chr3:007892641	0.0	W/7892641-7893033,7893138-7893265,7893360-7893771,7893912-7894010,7894150-7894374,7894463-7894624,7894714-7895145	AT3G22330.1  CDS  gene_syn PMH2, putative mitochondrial RNA helicase 2  gene PMH2  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function ATP-dependent helicase activity|GO:0008026||ISS  product PMH2 (putative mitochondrial RNA helicase 2); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding  note putative mitochondrial RNA helicase 2 (PMH2); FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding; LOCATED IN: mitochondrion, nucleolus, cell wall; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1); ATP-dependent helicase/ DNA binding / RNA binding (TAIR:AT3G22310.1); Has 88907 Blast hits to 51552 proteins in 2242 species: Archae - 850; Bacteria - 34069; Metazoa - 21460; Fungi - 7605; Plants - 6680; Viruses - 588; Other Eukaryotes - 17655 (source: NCBI BLink).  protein_id AT3G22330.1p  transcript_id AT3G22330.1  protein_id AT3G22330.1p  transcript_id AT3G22330.1  
At3g22340	chr3:007897484	0.0	W/7897484-7898398	AT3G22340.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 4.2e-60 P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At3g22345	chr3:007899215	0.0	W/7899215-7900219	AT3G22345.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G03730.1); Has 217 Blast hits to 209 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 217; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G22345.1p  transcript_id AT3G22345.1  protein_id AT3G22345.1p  transcript_id AT3G22345.1  
At3g22350	chr3:007901905	0.0	W/7901905-7903041	AT3G22350.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G22730.1); Has 882 Blast hits to 859 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 880; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G22350.1p  transcript_id AT3G22350.1  protein_id AT3G22350.1p  transcript_id AT3G22350.1  
At3g22360	chr3:007904156	0.0	W/7904156-7904455,7904539-7904667,7904750-7905238,7905325-7905384	AT3G22360.1  CDS  gene_syn AOX1B  gene AOX1B  function encodes an alternative oxidase whose expression is limited to flowers and floral buds.  go_component mitochondrion|GO:0005739|14671022|IDA  go_process oxidation reduction|GO:0055114|9349280|TAS  go_function alternative oxidase activity|GO:0009916|9349280|ISS  go_function alternative oxidase activity|GO:0009916||ISS  product AOX1B; alternative oxidase  note AOX1B; FUNCTIONS IN: alternative oxidase activity; INVOLVED IN: oxidation reduction; LOCATED IN: mitochondrion; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, IL.00 inflorescence just visible; CONTAINS InterPro DOMAIN/s: Alternative oxidase (InterPro:IPR002680); BEST Arabidopsis thaliana protein match is: AOX1C; alternative oxidase (TAIR:AT3G27620.1); Has 1057 Blast hits to 1055 proteins in 175 species: Archae - 0; Bacteria - 81; Metazoa - 6; Fungi - 138; Plants - 255; Viruses - 0; Other Eukaryotes - 577 (source: NCBI BLink).  protein_id AT3G22360.1p  transcript_id AT3G22360.1  protein_id AT3G22360.1p  transcript_id AT3G22360.1  
At3g22370	chr3:007906890	0.0	W/7906890-7907276,7907359-7907487,7907788-7908276,7908357-7908416	AT3G22370.1  CDS  gene_syn ALTERNATIVE OXIDASE 1A, AOX1A, ATAOX1A  gene AOX1A  function Encodes an isoform of alternative oxidase that is expressed in rosettes, flowers, and root. The alternative oxidase of plant mitochondria transfers electrons from the ubiquinone pool to oxygen without energy conservations. It is regulated through transcriptional control and by pyruvate. Plays a role in shoot acclimation to low temperature. Also is capable of ameliorating reactive oxygen species production when the cytochrome pathway is inhibited.  go_component mitochondrion|GO:0005739|15276431|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|15642340|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process response to stress|GO:0006950|18567827|IEP  go_process response to cold|GO:0009409|16299170|IMP  go_process cellular respiration|GO:0045333|15642340|IDA  go_process oxidation reduction|GO:0055114|9349280|TAS  go_function alternative oxidase activity|GO:0009916|1438286|IGI  go_function alternative oxidase activity|GO:0009916|15642340|IDA  go_function alternative oxidase activity|GO:0009916||ISS  product AOX1A (ALTERNATIVE OXIDASE 1A); alternative oxidase  note ALTERNATIVE OXIDASE 1A (AOX1A); FUNCTIONS IN: alternative oxidase activity; INVOLVED IN: oxidation reduction, cellular respiration, response to cold, response to stress; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Alternative oxidase (InterPro:IPR002680); BEST Arabidopsis thaliana protein match is: AOX1B; alternative oxidase (TAIR:AT3G22360.1); Has 1058 Blast hits to 1058 proteins in 175 species: Archae - 0; Bacteria - 81; Metazoa - 6; Fungi - 138; Plants - 258; Viruses - 0; Other Eukaryotes - 575 (source: NCBI BLink).  protein_id AT3G22370.1p  transcript_id AT3G22370.1  protein_id AT3G22370.1p  transcript_id AT3G22370.1  
At3g22380	chr3:007913181	0.0	W/7913181-7913280,7913372-7913911,7914003-7914202,7914278-7914572,7914664-7914967,7915053-7915092,7915176-7915271,7915434-7915656,7915762-7915828,7915923-7915989,7916072-7916401,7916489-7918871,7918945-7918967	AT3G22380.2  CDS  gene_syn TIC, TIME FOR COFFEE  gene TIC  function Encodes a nucleus-acting plant-specific clock regulator working close to the central oscillator and affecting the circadian gating of light responses. Circadian gating is the alteration of circadian phase according to the photoperiod of the entraining day/light cycle and the rhythmic antagonism of light responses in the early subjective night. TIC differentially regulates CCA1 and PRR9 from LHY, with LHY expression as a dominant genetic target of TIC action.  go_component nucleus|GO:0005634|17496120|IDA  go_process regulation of circadian rhythm|GO:0042752|14555691|IMP  go_function molecular_function|GO:0003674||ND  product TIC (TIME FOR COFFEE)  note TIME FOR COFFEE (TIC); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of circadian rhythm; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: TKL (TIC-LIKE) (TAIR:AT3G63180.1); Has 17199 Blast hits to 11959 proteins in 522 species: Archae - 8; Bacteria - 995; Metazoa - 9257; Fungi - 3231; Plants - 621; Viruses - 81; Other Eukaryotes - 3006 (source: NCBI BLink).  protein_id AT3G22380.2p  transcript_id AT3G22380.2  protein_id AT3G22380.2p  transcript_id AT3G22380.2  
At3g22380	chr3:007913181	0.0	W/7913181-7913280,7913372-7913911,7914003-7914202,7914278-7914572,7914664-7914967,7915053-7915092,7915176-7915271,7915434-7915656,7915762-7915828,7915923-7915989,7916072-7916401,7916489-7918879	AT3G22380.1  CDS  gene_syn TIC, TIME FOR COFFEE  gene TIC  function Encodes a nucleus-acting plant-specific clock regulator working close to the central oscillator and affecting the circadian gating of light responses. Circadian gating is the alteration of circadian phase according to the photoperiod of the entraining day/light cycle and the rhythmic antagonism of light responses in the early subjective night. TIC differentially regulates CCA1 and PRR9 from LHY, with LHY expression as a dominant genetic target of TIC action.  go_component nucleus|GO:0005634|17496120|IDA  go_process regulation of circadian rhythm|GO:0042752|14555691|IMP  go_function molecular_function|GO:0003674||ND  product TIC (TIME FOR COFFEE)  note TIME FOR COFFEE (TIC); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of circadian rhythm; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: TKL (TIC-LIKE) (TAIR:AT3G63180.1); Has 32249 Blast hits to 19160 proteins in 688 species: Archae - 6; Bacteria - 1642; Metazoa - 17652; Fungi - 5442; Plants - 1247; Viruses - 173; Other Eukaryotes - 6087 (source: NCBI BLink).  protein_id AT3G22380.1p  transcript_id AT3G22380.1  protein_id AT3G22380.1p  transcript_id AT3G22380.1  
At3g22400	chr3:007927011	0.0	W/7927011-7927251,7927470-7927774,7928525-7928768,7928853-7929191,7929278-7929363,7929464-7929571,7929678-7929982,7930056-7930319,7930399-7931167	AT3G22400.1  CDS  gene_syn LOX5  gene LOX5  go_component chloroplast|GO:0009507|15028209|IDA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function lipoxygenase activity|GO:0016165||IEA  go_function oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|GO:0016702||IEA  go_function metal ion binding|GO:0046872||IEA  go_process root development|GO:0048364|17369372|IMP  go_function lipoxygenase activity|GO:0016165||ISS  product LOX5; electron carrier/ iron ion binding / lipoxygenase/ metal ion binding / oxidoreductase, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen  note LOX5; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding; INVOLVED IN: root development; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Lipoxygenase, C-terminal (InterPro:IPR013819), Lipoxygenase (InterPro:IPR000907), Lipoxygenase, plant (InterPro:IPR001246); BEST Arabidopsis thaliana protein match is: LOX1; lipoxygenase (TAIR:AT1G55020.1); Has 1114 Blast hits to 1104 proteins in 146 species: Archae - 0; Bacteria - 73; Metazoa - 482; Fungi - 35; Plants - 508; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT3G22400.1p  transcript_id AT3G22400.1  protein_id AT3G22400.1p  transcript_id AT3G22400.1  
At3g22410	chr3:007935590	0.0	C/7935590-7935664,7935388-7935505,7935213-7935301,7935088-7935134,7934928-7935019,7934086-7934219,7933328-7933975	AT3G22410.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05370.1); Has 1032 Blast hits to 1032 proteins in 165 species: Archae - 0; Bacteria - 0; Metazoa - 245; Fungi - 243; Plants - 390; Viruses - 0; Other Eukaryotes - 154 (source: NCBI BLink).  protein_id AT3G22410.1p  transcript_id AT3G22410.1  protein_id AT3G22410.1p  transcript_id AT3G22410.1  
At3g22415	chr3:007941337	0.0	W/7941337-7941540	AT3G22415.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G22415.1p  transcript_id AT3G22415.1  protein_id AT3G22415.1p  transcript_id AT3G22415.1  
At3g22420	chr3:007946652	0.0	W/7946652-7946726,7946806-7946843,7947004-7947231,7947339-7947559,7947656-7947813,7947891-7948263,7948345-7948958	AT3G22420.1  CDS  gene_syn ARABIDOPSIS THALIANA WITH NO K 2, ATWNK2, PROTEIN KINASE, WITH NO K 2, WNK2, ZIK3  gene WNK2  function Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its transcription is under the control of circadian rhythms.  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468|12506983|TAS  go_process photoperiodism, flowering|GO:0048573|18761494|IMP  go_function protein kinase activity|GO:0004672|12506983|TAS  go_function kinase activity|GO:0016301||ISS  product WNK2 (WITH NO K 2); kinase/ protein kinase  note WITH NO K 2 (WNK2); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: photoperiodism, flowering, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: WNK1 (WITH NO LYSINE (K) 1); kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT3G04910.1); Has 75368 Blast hits to 74687 proteins in 2673 species: Archae - 38; Bacteria - 5419; Metazoa - 32748; Fungi - 6577; Plants - 16097; Viruses - 366; Other Eukaryotes - 14123 (source: NCBI BLink).  protein_id AT3G22420.1p  transcript_id AT3G22420.1  protein_id AT3G22420.1p  transcript_id AT3G22420.1  
At3g22420	chr3:007946652	0.0	W/7946652-7946726,7946806-7946843,7947004-7947231,7947339-7947813,7947891-7948958	AT3G22420.2  CDS  gene_syn ARABIDOPSIS THALIANA WITH NO K 2, ATWNK2, PROTEIN KINASE, WITH NO K 2, WNK2, ZIK3  gene WNK2  function Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its transcription is under the control of circadian rhythms.  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468|12506983|TAS  go_process photoperiodism, flowering|GO:0048573|18761494|IMP  go_function protein kinase activity|GO:0004672|12506983|TAS  go_function kinase activity|GO:0016301||ISS  product WNK2 (WITH NO K 2); kinase/ protein kinase  note WITH NO K 2 (WNK2); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: photoperiodism, flowering, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: WNK1 (WITH NO LYSINE (K) 1); kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT3G04910.1); Has 61399 Blast hits to 61032 proteins in 2313 species: Archae - 23; Bacteria - 4026; Metazoa - 26896; Fungi - 5442; Plants - 12930; Viruses - 241; Other Eukaryotes - 11841 (source: NCBI BLink).  protein_id AT3G22420.2p  transcript_id AT3G22420.2  protein_id AT3G22420.2p  transcript_id AT3G22420.2  
At3g22421	chr3:007949116	0.0	C/7949116-7950396	AT3G22421.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein-related (TAIR:AT3G22940.1); Has 657 Blast hits to 628 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 657; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G22421.1p  transcript_id AT3G22421.1  protein_id AT3G22421.1p  transcript_id AT3G22421.1  
At3g22425	chr3:007951110	0.0	W/7951110-7951326,7951424-7951545,7951717-7951821,7951966-7952058,7952163-7952237,7952347-7952409,7952527-7952636,7952826-7952853	AT3G22425.2  CDS  gene_syn HISN5A, IGPD, IMIDAZOLEGLYCEROLPHOSPHATE DEHYDRATASE  gene IGPD  function Encodes imidazoleglycerolphosphate dehydratase.  go_component chloroplast|GO:0009507||IEA  go_process histidine biosynthetic process|GO:0000105|17434988|IMP  go_process histidine biosynthetic process|GO:0000105|8066131|IDA  go_process histidine biosynthetic process|GO:0000105||ISS  go_function imidazoleglycerol-phosphate dehydratase activity|GO:0004424|8066131|IDA  go_function imidazoleglycerol-phosphate dehydratase activity|GO:0004424||ISS  product IGPD; imidazoleglycerol-phosphate dehydratase  note IGPD; FUNCTIONS IN: imidazoleglycerol-phosphate dehydratase activity; INVOLVED IN: histidine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Imidazole glycerol-phosphate dehydratase (InterPro:IPR000807); BEST Arabidopsis thaliana protein match is: imidazoleglycerol-phosphate dehydratase, putative (TAIR:AT4G14910.1); Has 4917 Blast hits to 4915 proteins in 1281 species: Archae - 135; Bacteria - 2307; Metazoa - 2; Fungi - 151; Plants - 61; Viruses - 0; Other Eukaryotes - 2261 (source: NCBI BLink).  protein_id AT3G22425.2p  transcript_id AT3G22425.2  protein_id AT3G22425.2p  transcript_id AT3G22425.2  
At3g22425	chr3:007951110	0.0	W/7951110-7951326,7951424-7951545,7951717-7951821,7951966-7952058,7952163-7952409,7952527-7952537	AT3G22425.1  CDS  gene_syn HISN5A, IGPD, IMIDAZOLEGLYCEROLPHOSPHATE DEHYDRATASE  gene IGPD  function Encodes imidazoleglycerolphosphate dehydratase.  go_component chloroplast|GO:0009507||IEA  go_process histidine biosynthetic process|GO:0000105|17434988|IMP  go_process histidine biosynthetic process|GO:0000105|8066131|IDA  go_process histidine biosynthetic process|GO:0000105||ISS  go_function imidazoleglycerol-phosphate dehydratase activity|GO:0004424|8066131|IDA  go_function imidazoleglycerol-phosphate dehydratase activity|GO:0004424||ISS  product IGPD; imidazoleglycerol-phosphate dehydratase  note IGPD; FUNCTIONS IN: imidazoleglycerol-phosphate dehydratase activity; INVOLVED IN: histidine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Imidazole glycerol-phosphate dehydratase (InterPro:IPR000807); BEST Arabidopsis thaliana protein match is: imidazoleglycerol-phosphate dehydratase, putative (TAIR:AT4G14910.2); Has 4670 Blast hits to 4670 proteins in 1281 species: Archae - 135; Bacteria - 2306; Metazoa - 2; Fungi - 151; Plants - 60; Viruses - 0; Other Eukaryotes - 2016 (source: NCBI BLink).  protein_id AT3G22425.1p  transcript_id AT3G22425.1  protein_id AT3G22425.1p  transcript_id AT3G22425.1  
At3g22430	chr3:007953455	0.0	W/7953455-7954483	AT3G22430.1  CDS  gene_syn MCB17.18  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; Has 493 Blast hits to 438 proteins in 88 species: Archae - 2; Bacteria - 43; Metazoa - 185; Fungi - 27; Plants - 37; Viruses - 4; Other Eukaryotes - 195 (source: NCBI BLink).  protein_id AT3G22430.1p  transcript_id AT3G22430.1  protein_id AT3G22430.1p  transcript_id AT3G22430.1  
At3g22435	chr3:007956249	0.0	W/7956249-7956444,7957250-7957605	AT3G22435.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product XS domain-containing protein  note XS domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Region of unknown function XS (InterPro:IPR005380); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein (TAIR:AT5G59390.1); Has 67 Blast hits to 67 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G22435.1p  transcript_id AT3G22435.1  protein_id AT3G22435.1p  transcript_id AT3G22435.1  
At3g22436	chr3:007957898	0.0	C/7957898-7958020	AT3G22436.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G22436.1p  transcript_id AT3G22436.1  protein_id AT3G22436.1p  transcript_id AT3G22436.1  
At3g22440	chr3:007959854	0.0	W/7959854-7960766,7961101-7961276,7961377-7961886	AT3G22440.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT4G14900.1); Has 1107 Blast hits to 1058 proteins in 102 species: Archae - 0; Bacteria - 5; Metazoa - 133; Fungi - 62; Plants - 888; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT3G22440.1p  transcript_id AT3G22440.1  protein_id AT3G22440.1p  transcript_id AT3G22440.1  
At3g22450	chr3:007962443	0.0	W/7962443-7963378	AT3G22450.1  CDS  go_component intracellular|GO:0005622||IEA  go_component mitochondrion|GO:0005739||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  product structural constituent of ribosome  note structural constituent of ribosome; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: mitochondrion, ribosome, intracellular; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18/L5 (InterPro:IPR005484); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT1G08845.2); Has 216 Blast hits to 216 proteins in 58 species: Archae - 0; Bacteria - 58; Metazoa - 40; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT3G22450.1p  transcript_id AT3G22450.1  protein_id AT3G22450.1p  transcript_id AT3G22450.1  
At3g22460	chr3:007963855	0.0	W/7963855-7963896,7963989-7964098,7964191-7964248,7964337-7964600,7964677-7964769	AT3G22460.1  CDS  gene_syn O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1, OASA2  gene OASA2  function Encodes a member of a family of genes with O-acetylserine(thiol)lyase activity.  go_function catalytic activity|GO:0003824||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_process response to zinc ion|GO:0010043|14690510|IEP  go_process cysteine biosynthetic process|GO:0019344||ISS  go_function cysteine synthase activity|GO:0004124||ISS  product OASA2 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1); catalytic/ cysteine synthase/ pyridoxal phosphate binding  note O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1 (OASA2); FUNCTIONS IN: pyridoxal phosphate binding, cysteine synthase activity, catalytic activity; INVOLVED IN: response to zinc ion, cysteine biosynthetic process; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (InterPro:IPR001216), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926); BEST Arabidopsis thaliana protein match is: OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1); cysteine synthase (TAIR:AT4G14880.2); Has 9151 Blast hits to 9140 proteins in 1429 species: Archae - 162; Bacteria - 5180; Metazoa - 216; Fungi - 268; Plants - 324; Viruses - 0; Other Eukaryotes - 3001 (source: NCBI BLink).  protein_id AT3G22460.1p  transcript_id AT3G22460.1  protein_id AT3G22460.1p  transcript_id AT3G22460.1  
At3g22470	chr3:007966066	0.0	C/7966066-7967925	AT3G22470.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G12300.1); Has 28628 Blast hits to 6266 proteins in 192 species: Archae - 4; Bacteria - 32; Metazoa - 995; Fungi - 860; Plants - 25204; Viruses - 0; Other Eukaryotes - 1533 (source: NCBI BLink).  protein_id AT3G22470.1p  transcript_id AT3G22470.1  protein_id AT3G22470.1p  transcript_id AT3G22470.1  
At3g22480	chr3:007969080	0.0	W/7969080-7969526	AT3G22480.1  CDS  gene_syn PDF2, PREFOLDIN 2  gene PDF2  go_component prefoldin complex|GO:0016272||IEA  go_process protein folding|GO:0006457||IEA  go_function unfolded protein binding|GO:0051082||IEA  product prefoldin-related KE2 family protein  note PREFOLDIN 2 (PDF2); FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding; LOCATED IN: prefoldin complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin beta-like (InterPro:IPR002777), Prefoldin (InterPro:IPR009053); Has 303 Blast hits to 303 proteins in 148 species: Archae - 11; Bacteria - 0; Metazoa - 113; Fungi - 80; Plants - 37; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT3G22480.1p  transcript_id AT3G22480.1  protein_id AT3G22480.1p  transcript_id AT3G22480.1  
At3g22480	chr3:007969080	0.0	W/7969080-7969526	AT3G22480.2  CDS  gene_syn PDF2, PREFOLDIN 2  gene PDF2  go_component prefoldin complex|GO:0016272||IEA  go_process protein folding|GO:0006457||IEA  go_function unfolded protein binding|GO:0051082||IEA  product prefoldin-related KE2 family protein  note PREFOLDIN 2 (PDF2); FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding; LOCATED IN: prefoldin complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin beta-like (InterPro:IPR002777), Prefoldin (InterPro:IPR009053); Has 303 Blast hits to 303 proteins in 148 species: Archae - 11; Bacteria - 0; Metazoa - 113; Fungi - 80; Plants - 37; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT3G22480.2p  transcript_id AT3G22480.2  protein_id AT3G22480.2p  transcript_id AT3G22480.2  
At3g22490	chr3:007970421	0.0	C/7970421-7970738,7970039-7970344,7969785-7969949	AT3G22490.1  CDS  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||ISS  go_function molecular_function|GO:0003674||ND  product late embryogenesis abundant protein, putative / LEA protein, putative  note late embryogenesis abundant protein, putative / LEA protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Seed maturation protein (InterPro:IPR007011); BEST Arabidopsis thaliana protein match is: ATECP31 (TAIR:AT3G22500.1); Has 125 Blast hits to 114 proteins in 29 species: Archae - 2; Bacteria - 32; Metazoa - 7; Fungi - 0; Plants - 80; Viruses - 3; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G22490.1p  transcript_id AT3G22490.1  protein_id AT3G22490.1p  transcript_id AT3G22490.1  
At3g22492	chr3:007971071	0.0	W/7971071-7971575	AT3G22492.1  pseudogenic_transcript  pseudo  function pseudogene of prefoldin-related KE2 family protein  
At3g22500	chr3:007972554	0.0	C/7972554-7972865,7972181-7972474,7971920-7972084	AT3G22500.1  CDS  gene_syn ATECP31  gene ATECP31  function late embryogenesis abundant (LEA) protein  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||ISS  go_function molecular_function|GO:0003674||ND  product ATECP31  note ATECP31; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: seed; CONTAINS InterPro DOMAIN/s: Seed maturation protein (InterPro:IPR007011); BEST Arabidopsis thaliana protein match is: late embryogenesis abundant protein, putative / LEA protein, putative (TAIR:AT3G22490.1); Has 109 Blast hits to 104 proteins in 25 species: Archae - 0; Bacteria - 30; Metazoa - 4; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G22500.1p  transcript_id AT3G22500.1  protein_id AT3G22500.1p  transcript_id AT3G22500.1  
At3g22510	chr3:007973544	0.0	W/7973544-7973775,7973862-7973950,7974034-7974087	AT3G22510.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27990.1); Has 130 Blast hits to 130 proteins in 64 species: Archae - 0; Bacteria - 0; Metazoa - 45; Fungi - 42; Plants - 23; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT3G22510.1p  transcript_id AT3G22510.1  protein_id AT3G22510.1p  transcript_id AT3G22510.1  
At3g22520	chr3:007974984	0.0	W/7974984-7975042,7975577-7976121,7976208-7977406	AT3G22520.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14840.1); Has 433 Blast hits to 421 proteins in 115 species: Archae - 9; Bacteria - 63; Metazoa - 124; Fungi - 60; Plants - 41; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).  protein_id AT3G22520.1p  transcript_id AT3G22520.1  protein_id AT3G22520.1p  transcript_id AT3G22520.1  
At3g22530	chr3:007977774	0.0	C/7977774-7978370	AT3G22530.1  CDS  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14830.1); Has 37 Blast hits to 37 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G22530.1p  transcript_id AT3G22530.1  protein_id AT3G22530.1p  transcript_id AT3G22530.1  
At3g22540	chr3:007984233	0.0	C/7984233-7984565	AT3G22540.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1677, plant (InterPro:IPR012876); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14819.1); Has 129 Blast hits to 128 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G22540.1p  transcript_id AT3G22540.1  protein_id AT3G22540.1p  transcript_id AT3G22540.1  
At3g22550	chr3:007992078	0.0	C/7992078-7992805,7991827-7991902	AT3G22550.1  CDS  go_process response to salt stress|GO:0009651|11351099|IEP  go_function molecular_function|GO:0003674||ND  product senescence-associated protein-related  note senescence-associated protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: MARD1 (TAIR:AT3G63210.1); Has 303 Blast hits to 303 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 303; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G22550.1p  transcript_id AT3G22550.1  protein_id AT3G22550.1p  transcript_id AT3G22550.1  
At3g22555	chr3:007995486	0.0	W/7995486-7996636	AT3G22555.1  pseudogenic_transcript  pseudo  gene_syn F16J14.12  note pseudogene, putative DNA methyltransferase  
At3g22560	chr3:007998915	0.0	C/7998915-7999442	AT3G22560.1  CDS  go_component membrane|GO:0016020|17432890|IDA  go_process metabolic process|GO:0008152||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_process metabolic process|GO:0008152||ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product GCN5-related N-acetyltransferase (GNAT) family protein  note GCN5-related N-acetyltransferase (GNAT) family protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: GCN5-related N-acetyltransferase (GNAT) family protein (TAIR:AT2G32020.1); Has 4053 Blast hits to 4049 proteins in 826 species: Archae - 61; Bacteria - 3567; Metazoa - 0; Fungi - 54; Plants - 68; Viruses - 0; Other Eukaryotes - 303 (source: NCBI BLink).  protein_id AT3G22560.1p  transcript_id AT3G22560.1  protein_id AT3G22560.1p  transcript_id AT3G22560.1  
At3g22570	chr3:008000811	0.0	C/8000811-8001161	AT3G22570.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: root, pollen tube; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT3G22580.1); Has 43 Blast hits to 43 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G22570.1p  transcript_id AT3G22570.1  protein_id AT3G22570.1p  transcript_id AT3G22570.1  
At3g22580	chr3:008002762	0.0	C/8002762-8003145	AT3G22580.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT3G22600.1); Has 129 Blast hits to 129 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G22580.1p  transcript_id AT3G22580.1  protein_id AT3G22580.1p  transcript_id AT3G22580.1  
At3g22590	chr3:008003999	0.0	W/8003999-8005070,8005172-8005254,8005360-8005452	AT3G22590.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product RNA pol II accessory factor Cdc73 family protein  note RNA pol II accessory factor Cdc73 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II accessory factor, Cdc73 (InterPro:IPR007852); Has 392 Blast hits to 300 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 227; Fungi - 87; Plants - 21; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT3G22590.1p  transcript_id AT3G22590.1  protein_id AT3G22590.1p  transcript_id AT3G22590.1  
At3g22600	chr3:008007076	0.0	C/8007076-8007397,8006937-8006993,8006711-8006844	AT3G22600.1  CDS  go_process lipid transport|GO:0006869||IEA  go_function lipid binding|GO:0008289||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT4G14815.1); Has 636 Blast hits to 632 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 631; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G22600.1p  transcript_id AT3G22600.1  protein_id AT3G22600.1p  transcript_id AT3G22600.1  
At3g22620	chr3:008008615	0.0	W/8008615-8008942,8009041-8009067,8009159-8009415	AT3G22620.1  CDS  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: chloroplast envelope; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP)-related (TAIR:AT1G05450.2); Has 610 Blast hits to 566 proteins in 89 species: Archae - 0; Bacteria - 75; Metazoa - 46; Fungi - 29; Plants - 367; Viruses - 16; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT3G22620.1p  transcript_id AT3G22620.1  protein_id AT3G22620.1p  transcript_id AT3G22620.1  
At3g22630	chr3:008010617	0.0	C/8010617-8010774,8010394-8010517,8009709-8010041	AT3G22630.1  CDS  gene_syn 20S PROTEASOME BETA SUBUNIT D1, MULTICATALYTIC ENDOPEPTIDASE COMPLEX, PROTEASOME COMPONENT, BETA SUBUNIT, PBD1, PRCGB  gene PBD1  function Encodes 20S proteasome beta subunit PBD1 (PBD1).  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function threonine-type endopeptidase activity|GO:0004298||IEA  go_component proteasome core complex|GO:0005839|9373170|TAS  go_component proteasome core complex|GO:0005839|9611183|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_function peptidase activity|GO:0008233||ISS  product PBD1 (20S PROTEASOME BETA SUBUNIT D1); peptidase/ threonine-type endopeptidase  note 20S PROTEASOME BETA SUBUNIT D1 (PBD1); FUNCTIONS IN: peptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, apoplast, plasma membrane, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: PBD2 (20S PROTEASOME BETA SUBUNIT 2); peptidase/ threonine-type endopeptidase (TAIR:AT4G14800.1); Has 2789 Blast hits to 2789 proteins in 301 species: Archae - 337; Bacteria - 26; Metazoa - 1001; Fungi - 633; Plants - 333; Viruses - 0; Other Eukaryotes - 459 (source: NCBI BLink).  protein_id AT3G22630.1p  transcript_id AT3G22630.1  protein_id AT3G22630.1p  transcript_id AT3G22630.1  
At3g22640	chr3:008013317	0.0	C/8013317-8013883,8012989-8013069,8012590-8012898,8012186-8012495,8011902-8012095	AT3G22640.1  CDS  gene_syn PAP85  gene PAP85  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process biological_process|GO:0008150||ND  go_function nutrient reservoir activity|GO:0045735||ISS  product PAP85; nutrient reservoir  note PAP85; FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: stem, seed; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cupin family protein (TAIR:AT4G36700.1); Has 733 Blast hits to 730 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 675; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT3G22640.1p  transcript_id AT3G22640.1  protein_id AT3G22640.1p  transcript_id AT3G22640.1  
At3g22650	chr3:008014809	0.0	W/8014809-8015385,8015419-8015960	AT3G22650.1  CDS  gene_syn ATSFL61, CEG, CEGENDUO, S-LOCUS F-BOX 61, SFL61  gene CEG  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733|16525894|IEP  go_process lateral root formation|GO:0010311|16525894|IMP  go_function molecular_function|GO:0003674||ND  product CEG (CEGENDUO)  note CEGENDUO (CEG); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus, lateral root formation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (FBX15) (TAIR:AT4G04690.1); Has 759 Blast hits to 738 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 757; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G22650.1p  transcript_id AT3G22650.1  protein_id AT3G22650.1p  transcript_id AT3G22650.1  
At3g22660	chr3:008016237	0.0	C/8016237-8017118	AT3G22660.1  CDS  go_component cellular_component|GO:0005575||ND  product rRNA processing protein-related  note rRNA processing protein-related; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Eukaryotic rRNA processing (InterPro:IPR008610); Has 932 Blast hits to 837 proteins in 181 species: Archae - 0; Bacteria - 49; Metazoa - 367; Fungi - 161; Plants - 36; Viruses - 0; Other Eukaryotes - 319 (source: NCBI BLink).  protein_id AT3G22660.1p  transcript_id AT3G22660.1  protein_id AT3G22660.1p  transcript_id AT3G22660.1  
At3g22670	chr3:008017771	0.0	C/8017771-8019459	AT3G22670.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G04130.2); Has 17261 Blast hits to 5738 proteins in 177 species: Archae - 3; Bacteria - 20; Metazoa - 301; Fungi - 319; Plants - 15886; Viruses - 0; Other Eukaryotes - 732 (source: NCBI BLink).  protein_id AT3G22670.1p  transcript_id AT3G22670.1  protein_id AT3G22670.1p  transcript_id AT3G22670.1  
At3g22680	chr3:008019785	0.0	W/8019785-8019908,8020007-8020374	AT3G22680.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1950 (InterPro:IPR015270); Has 12 Blast hits to 12 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G22680.1p  transcript_id AT3G22680.1  protein_id AT3G22680.1p  transcript_id AT3G22680.1  
At3g22690	chr3:008022010	0.0	C/8022010-8024534,8021715-8021908,8021484-8021540,8020757-8020917	AT3G22690.1  CDS  go_component chloroplast|GO:0009507|19054358|IDA  go_process RNA modification|GO:0009451|19054358|IMP  go_process thylakoid membrane organization|GO:0010027|14576160|IMP  go_process photosystem II assembly|GO:0010207|19054358|IDA  go_process regulation of chlorophyll biosynthetic process|GO:0010380|19054358|IEP  go_process photosystem I assembly|GO:0048564|14576160|IDA  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: regulation of chlorophyll biosynthetic process, photosystem II assembly, photosystem I assembly, thylakoid membrane organization, RNA modification; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G16860.1); Has 17578 Blast hits to 5385 proteins in 178 species: Archae - 2; Bacteria - 4; Metazoa - 103; Fungi - 99; Plants - 16877; Viruses - 0; Other Eukaryotes - 493 (source: NCBI BLink).  protein_id AT3G22690.1p  transcript_id AT3G22690.1  protein_id AT3G22690.1p  transcript_id AT3G22690.1  
At3g22700	chr3:008024798	0.0	C/8024798-8025814	AT3G22700.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G22720.1); Has 905 Blast hits to 883 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 903; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G22700.1p  transcript_id AT3G22700.1  protein_id AT3G22700.1p  transcript_id AT3G22700.1  
At3g22710	chr3:008027077	0.0	C/8027077-8027274,8026779-8027024,8026202-8026738	AT3G22710.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G22720.1); Has 576 Blast hits to 549 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 576; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G22710.1p  transcript_id AT3G22710.1  protein_id AT3G22710.1p  transcript_id AT3G22710.1  
At3g22720	chr3:008028961	0.0	C/8028961-8030097	AT3G22720.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G22700.1); Has 761 Blast hits to 740 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 759; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G22720.1p  transcript_id AT3G22720.1  protein_id AT3G22720.1p  transcript_id AT3G22720.1  
At3g22723	chr3:008030474	0.0	W/8030474-8030629	AT3G22723.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G22723.1p  transcript_id AT3G22723.1  protein_id AT3G22723.1p  transcript_id AT3G22723.1  
At3g22730	chr3:008031341	0.0	C/8031341-8032459	AT3G22730.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G22350.1); Has 986 Blast hits to 962 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 984; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G22730.1p  transcript_id AT3G22730.1  protein_id AT3G22730.1p  transcript_id AT3G22730.1  
At3g22740	chr3:008035531	0.0	C/8035531-8035710,8034667-8034723,8034315-8034541,8034058-8034187,8033616-8033819,8033455-8033526,8033200-8033373	AT3G22740.1  CDS  gene_syn HMT3  gene HMT3  function homocysteine S-methyltransferase (HMT3)  go_component plasma membrane|GO:0005886|17317660|IDA  go_function homocysteine S-methyltransferase activity|GO:0008898||IEA  go_process biological_process|GO:0008150||ND  go_function homocysteine S-methyltransferase activity|GO:0008898||ISS  product HMT3; homocysteine S-methyltransferase  note HMT3; FUNCTIONS IN: homocysteine S-methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Homocysteine S-methyltransferase (InterPro:IPR003726); BEST Arabidopsis thaliana protein match is: HMT2 (HOMOCYSTEINE METHYLTRANSFERASE 2); homocysteine S-methyltransferase (TAIR:AT3G63250.1); Has 4562 Blast hits to 4558 proteins in 1031 species: Archae - 4; Bacteria - 2224; Metazoa - 297; Fungi - 97; Plants - 98; Viruses - 0; Other Eukaryotes - 1842 (source: NCBI BLink).  protein_id AT3G22740.1p  transcript_id AT3G22740.1  protein_id AT3G22740.1p  transcript_id AT3G22740.1  
At3g22750	chr3:008038799	0.0	C/8038799-8039096,8038593-8038714,8038316-8038515,8038060-8038234,8037841-8037975,8037364-8037570	AT3G22750.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), ATMRK serine/threonine protein kinase-like (InterPro:IPR015783), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT4G14780.1); Has 94157 Blast hits to 93036 proteins in 3595 species: Archae - 75; Bacteria - 8061; Metazoa - 41878; Fungi - 7877; Plants - 18896; Viruses - 493; Other Eukaryotes - 16877 (source: NCBI BLink).  protein_id AT3G22750.1p  transcript_id AT3G22750.1  protein_id AT3G22750.1p  transcript_id AT3G22750.1  
At3g22760	chr3:008044622	0.0	W/8044622-8044684,8044948-8045105,8045186-8045555,8045656-8046005,8046087-8046164,8046244-8046424,8046513-8046608,8046685-8046751,8046834-8046954,8047036-8047381	AT3G22760.1  CDS  gene_syn SOL1  gene SOL1  function CXC domain containing TSO1-like protein 1. The gene is expressed in stamens, pollen mother cells, and immature ovules.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transcription factor activity|GO:0003700|11118137|ISS  product SOL1; transcription factor  note SOL1; FUNCTIONS IN: transcription factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tesmin/TSO1-like, CXC (InterPro:IPR005172); BEST Arabidopsis thaliana protein match is: TCX2 (TESMIN/TSO1-LIKE CXC 2); transcription factor (TAIR:AT4G14770.1); Has 956 Blast hits to 512 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 423; Fungi - 0; Plants - 174; Viruses - 0; Other Eukaryotes - 359 (source: NCBI BLink).  protein_id AT3G22760.1p  transcript_id AT3G22760.1  protein_id AT3G22760.1p  transcript_id AT3G22760.1  
At3g22770	chr3:008047684	0.0	C/8047684-8048667	AT3G22770.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G19470.2); Has 516 Blast hits to 498 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 516; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G22770.1p  transcript_id AT3G22770.1  protein_id AT3G22770.1p  transcript_id AT3G22770.1  
At3g22780	chr3:008048927	0.0	W/8048927-8048992,8049279-8049439,8049527-8050073,8050192-8050580,8050668-8050742,8050850-8051030,8051134-8051229,8051330-8051396,8051480-8051633,8051707-8052058	AT3G22780.1  CDS  gene_syn ATTSO1, CHINESE FOR  UGLY , TSO1  gene TSO1  function putative DNA binding protein (tso1) mRNA, tso1-3 allele,  go_component nucleus|GO:0005634|10769244|IDA  go_process regulation of meristem organization|GO:0009934|10769244|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product TSO1 (CHINESE FOR  UGLY ); transcription factor  note CHINESE FOR  UGLY  (TSO1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of meristem organization; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tesmin/TSO1-like, CXC (InterPro:IPR005172); BEST Arabidopsis thaliana protein match is: TCX2 (TESMIN/TSO1-LIKE CXC 2); transcription factor (TAIR:AT4G14770.1); Has 912 Blast hits to 517 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 358; Fungi - 6; Plants - 168; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink).  protein_id AT3G22780.1p  transcript_id AT3G22780.1  protein_id AT3G22780.1p  transcript_id AT3G22780.1  
At3g22790	chr3:008057789	0.0	C/8057789-8057888,8053729-8057707,8052446-8053451	AT3G22790.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kinase interacting family protein  note kinase interacting family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053), KIP1-like (InterPro:IPR011684); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14760.1); Has 167995 Blast hits to 62112 proteins in 2147 species: Archae - 2214; Bacteria - 23421; Metazoa - 81973; Fungi - 11901; Plants - 6278; Viruses - 941; Other Eukaryotes - 41267 (source: NCBI BLink).  protein_id AT3G22790.1p  transcript_id AT3G22790.1  protein_id AT3G22790.1p  transcript_id AT3G22790.1  
At3g22800	chr3:008063063	0.0	C/8063063-8064475	AT3G22800.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function structural constituent of cell wall|GO:0005199|12644681|ISS  go_function protein binding|GO:0005515|12644681|ISS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein / extensin family protein  note leucine-rich repeat family protein / extensin family protein; FUNCTIONS IN: structural constituent of cell wall, protein binding; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / extensin family protein (TAIR:AT4G13340.1); Has 190262 Blast hits to 58140 proteins in 2022 species: Archae - 408; Bacteria - 29496; Metazoa - 65390; Fungi - 15285; Plants - 48236; Viruses - 5043; Other Eukaryotes - 26404 (source: NCBI BLink).  protein_id AT3G22800.1p  transcript_id AT3G22800.1  protein_id AT3G22800.1p  transcript_id AT3G22800.1  
At3g22810	chr3:008068595	0.0	W/8068595-8068903,8069355-8069465,8069724-8070156,8070248-8070490,8070576-8070625,8070927-8070984,8071345-8071559	AT3G22810.1  CDS  go_component cellular_component|GO:0005575||ND  go_process signal transduction|GO:0007165|15358268|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product phosphoinositide binding  note phosphoinositide binding; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pleckstrin-like, plant (InterPro:IPR013666), Protein of unknown function DUF828, plant (InterPro:IPR008546), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: phosphoinositide binding (TAIR:AT4G14740.2); Has 340 Blast hits to 175 proteins in 35 species: Archae - 3; Bacteria - 12; Metazoa - 17; Fungi - 2; Plants - 131; Viruses - 0; Other Eukaryotes - 175 (source: NCBI BLink).  protein_id AT3G22810.1p  transcript_id AT3G22810.1  protein_id AT3G22810.1p  transcript_id AT3G22810.1  
At3g22820	chr3:008073977	0.0	C/8073977-8074061,8073451-8073689	AT3G22820.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product allergen-related  note allergen-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14723.1); Has 132 Blast hits to 132 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G22820.1p  transcript_id AT3G22820.1  protein_id AT3G22820.1p  transcript_id AT3G22820.1  
At3g22830	chr3:008078981	0.0	W/8078981-8079340,8080035-8080895	AT3G22830.1  CDS  gene_syn AT-HSFA6B, HEAT SHOCK TRANSCRIPTION FACTOR A6B, HSFA6B  gene AT-HSFA6B  function member of Heat Stress Transcription Factor (Hsf) family  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AT-HSFA6B; DNA binding / transcription factor  note AT-HSFA6B; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: ATHSFA2; DNA binding / transcription factor (TAIR:AT2G26150.1); Has 1643 Blast hits to 1631 proteins in 173 species: Archae - 0; Bacteria - 9; Metazoa - 420; Fungi - 327; Plants - 459; Viruses - 4; Other Eukaryotes - 424 (source: NCBI BLink).  protein_id AT3G22830.1p  transcript_id AT3G22830.1  protein_id AT3G22830.1p  transcript_id AT3G22830.1  
At3g22840	chr3:008085302	0.0	C/8085302-8085445,8085117-8085215,8084628-8084972	AT3G22840.1  CDS  gene_syn EARLY LIGHT-INDUCABLE PROTEIN, ELIP, ELIP1  gene ELIP1  function Encodes an early light-inducible protein.  go_process response to cold|GO:0009409|16258011|IEP  go_function chlorophyll binding|GO:0016168||ISS  product ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN); chlorophyll binding  note EARLY LIGHT-INDUCABLE PROTEIN (ELIP1); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to cold; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2); chlorophyll binding (TAIR:AT4G14690.1); Has 240 Blast hits to 240 proteins in 42 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 180; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT3G22840.1p  transcript_id AT3G22840.1  protein_id AT3G22840.1p  transcript_id AT3G22840.1  
At3g22845	chr3:008087373	0.0	W/8087373-8087588,8087844-8088030,8088149-8088256,8088417-8088550	AT3G22845.1  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_process transport|GO:0006810||IEA  product emp24/gp25L/p24 protein-related  note emp24/gp25L/p24 protein-related; INVOLVED IN: transport; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family protein (TAIR:AT3G07680.1); Has 1355 Blast hits to 1355 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 771; Fungi - 319; Plants - 146; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT3G22845.1p  transcript_id AT3G22845.1  protein_id AT3G22845.1p  transcript_id AT3G22845.1  
At3g22850	chr3:008089067	0.0	W/8089067-8089266,8089543-8089783,8089870-8089990,8090091-8090275	AT3G22850.1  CDS  go_component plasma membrane|GO:0005886|17644812|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G43830.1); Has 828 Blast hits to 828 proteins in 285 species: Archae - 0; Bacteria - 440; Metazoa - 46; Fungi - 0; Plants - 196; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).  protein_id AT3G22850.1p  transcript_id AT3G22850.1  protein_id AT3G22850.1p  transcript_id AT3G22850.1  
At3g22860	chr3:008093219	0.0	C/8093219-8093248,8091502-8093124,8090654-8091418	AT3G22860.1  CDS  gene_syn ATEIF3C-2, ATTIF3C2, EIF3C-2, EUKARYOTIC INITIATION FACTOR 3C-2, TIF3C2  gene TIF3C2  function member of eIF3c - eukaryotic initiation factor 3c  go_component eukaryotic translation initiation factor 3 complex|GO:0005852||IEA  go_process translational initiation|GO:0006413||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_component eukaryotic translation initiation factor 3 complex|GO:0005852||ISS  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product TIF3C2; translation initiation factor  note TIF3C2; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: eukaryotic translation initiation factor 3 complex; EXPRESSED IN: sperm cell, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Proteasome component region PCI (InterPro:IPR000717), Winged helix repressor DNA-binding (InterPro:IPR011991), Eukaryotic translation initiation factor 3 subunit 8, N-terminal (InterPro:IPR008905); BEST Arabidopsis thaliana protein match is: EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C); translation initiation factor (TAIR:AT3G56150.1); Has 537 Blast hits to 406 proteins in 153 species: Archae - 0; Bacteria - 8; Metazoa - 248; Fungi - 89; Plants - 39; Viruses - 0; Other Eukaryotes - 153 (source: NCBI BLink).  protein_id AT3G22860.1p  transcript_id AT3G22860.1  protein_id AT3G22860.1p  transcript_id AT3G22860.1  
At3g22870	chr3:008096230	0.0	W/8096230-8097471	AT3G22870.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, sepal, flower, leaf; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G22421.1); Has 597 Blast hits to 569 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 593; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G22870.1p  transcript_id AT3G22870.1  protein_id AT3G22870.1p  transcript_id AT3G22870.1  
At3g22880	chr3:008100724	0.0	C/8100724-8100740,8100472-8100554,8099965-8100056,8099800-8099871,8099672-8099710,8099502-8099559,8099373-8099418,8099250-8099295,8099029-8099090,8098861-8098927,8098685-8098777,8098530-8098598,8098367-8098445,8098092-8098258,8097948-8097992	AT3G22880.1  CDS  gene_syn ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARLIM15, ATDMC1, DISRUPTION OF MEIOTIC CONTROL 1, DMC1  gene DMC1  function Expression of the AtDMC1 is restricted to pollen mother cells in anthers and to megaspore mother cells in ovules. Similar to meiosis-specific yeast DMC gene.  go_component nucleus|GO:0005634||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function DNA binding|GO:0003677||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function DNA-dependent ATPase activity|GO:0008094||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process DNA repair|GO:0006281||ISS  go_process meiosis|GO:0007126|9025299|TAS  go_process reciprocal meiotic recombination|GO:0007131||ISS  go_function damaged DNA binding|GO:0003684||ISS  go_function ATP binding|GO:0005524||ISS  go_function DNA-dependent ATPase activity|GO:0008094||ISS  product DMC1 (DISRUPTION OF MEIOTIC CONTROL 1); ATP binding / DNA binding / DNA-dependent ATPase/ damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding / protein binding  note DISRUPTION OF MEIOTIC CONTROL 1 (DMC1); FUNCTIONS IN: in 7 functions; INVOLVED IN: meiosis, DNA repair, reciprocal meiotic recombination; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA repair Rad51/transcription factor NusA, alpha-helical (InterPro:IPR010995), ATPase, AAA+ type, core (InterPro:IPR003593), Meiotic recombinase Dmc1 (InterPro:IPR011940), DNA repair and recombination, RecA-like (InterPro:IPR016467), Rad51, C-terminal (InterPro:IPR013632), RecA bacterial DNA recombination (InterPro:IPR001553); BEST Arabidopsis thaliana protein match is: ATRAD51; ATP binding / DNA binding / DNA-dependent ATPase/ damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / sequence-specific DNA binding (TAIR:AT5G20850.1); Has 8485 Blast hits to 8417 proteins in 2517 species: Archae - 531; Bacteria - 5101; Metazoa - 652; Fungi - 317; Plants - 359; Viruses - 21; Other Eukaryotes - 1504 (source: NCBI BLink).  protein_id AT3G22880.1p  transcript_id AT3G22880.1  protein_id AT3G22880.1p  transcript_id AT3G22880.1  
At3g22886	chr3:008108021	0.0	W/8108021-8108622	AT3G22886.1  miRNA  gene_syn MICRORNA 167A, MIR167A  gene MIR167A  function Encodes a microRNA that targets ARF family members ARF6 and ARF8. Essential for fertility of both ovules and anthers. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGAAGCUGCCAGCAUGAUCUA  go_component cellular_component|GO:0005575||ND  go_process gene silencing by miRNA|GO:0035195|15200956|TAS  go_process gene silencing by miRNA|GO:0035195|17021043|IMP  go_process cellular response to nitrogen levels|GO:0043562|18180456|IEP  go_process ovule development|GO:0048481|17021043|IMP  go_process anther development|GO:0048653|17021043|IMP  go_function molecular_function|GO:0003674||ND  product MIR167A (MICRORNA 167A); miRNA  transcript_id AT3G22886.1  
At3g22890	chr3:008112837	0.0	W/8112837-8113336,8113601-8114006,8114094-8114354,8114428-8114514,8114597-8114734	AT3G22890.1  CDS  gene_syn APS1, ATP SULFURYLASE 1  gene APS1  function encodes ATP sulfurylase, the first enzyme in the sulfate assimilation pathway of Arabidopsis.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process response to cadmium ion|GO:0046686|17075075|IEP  go_component chloroplast|GO:0009507|8058839|IDA  go_process response to salt stress|GO:0009651|11351099|IEP  go_function sulfate adenylyltransferase (ATP) activity|GO:0004781|7487067|TAS  product APS1 (ATP SULFURYLASE 1); sulfate adenylyltransferase (ATP)  note ATP SULFURYLASE 1 (APS1); FUNCTIONS IN: sulfate adenylyltransferase (ATP) activity; INVOLVED IN: response to cadmium ion, response to salt stress; LOCATED IN: chloroplast, plasma membrane, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), PUA-like (InterPro:IPR015947), ATP-sulfurylase (InterPro:IPR002650); BEST Arabidopsis thaliana protein match is: APS3; sulfate adenylyltransferase (ATP) (TAIR:AT4G14680.1); Has 1539 Blast hits to 1537 proteins in 426 species: Archae - 54; Bacteria - 514; Metazoa - 216; Fungi - 151; Plants - 136; Viruses - 0; Other Eukaryotes - 468 (source: NCBI BLink).  protein_id AT3G22890.1p  transcript_id AT3G22890.1  protein_id AT3G22890.1p  transcript_id AT3G22890.1  
At3g22900	chr3:008115645	0.0	W/8115645-8116169	AT3G22900.1  CDS  gene_syn NRPD7  gene NRPD7  function Non-catalytic subunit specific to DNA-directed RNA polymerase IV; homologous to budding yeast RPB7  go_process transcription|GO:0006350||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_component DNA-directed RNA polymerase IV complex|GO:0000418|19110459|IPI  go_process transcription|GO:0006350||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product NRPD7; DNA-directed RNA polymerase  note NRPD7; FUNCTIONS IN: DNA-directed RNA polymerase activity; INVOLVED IN: transcription; LOCATED IN: DNA-directed RNA polymerase IV complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), RNA polymerase Rpb7, N-terminal (InterPro:IPR005576); BEST Arabidopsis thaliana protein match is: NRPE7; DNA-directed RNA polymerase (TAIR:AT4G14660.1); Has 398 Blast hits to 398 proteins in 156 species: Archae - 34; Bacteria - 0; Metazoa - 116; Fungi - 116; Plants - 64; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT3G22900.1p  transcript_id AT3G22900.1  protein_id AT3G22900.1p  transcript_id AT3G22900.1  
At3g22910	chr3:008116335	0.0	C/8116335-8119388	AT3G22910.1  CDS  go_component membrane|GO:0016020||IEA  go_process ATP biosynthetic process|GO:0006754||IEA  go_process cation transport|GO:0006812||IEA  go_process calcium ion transport|GO:0006816||IEA  go_process metabolic process|GO:0008152||IEA  go_function calcium-transporting ATPase activity|GO:0005388|12805592|ISS  go_function calcium-transporting ATPase activity|GO:0005388||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  product calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13)  note calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13); FUNCTIONS IN: calmodulin binding, calcium-transporting ATPase activity; INVOLVED IN: cation transport, calcium ion transport, metabolic process, ATP biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, calcium-transporting, PMCA-type (InterPro:IPR006408), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA12) (TAIR:AT3G63380.1); Has 24850 Blast hits to 19682 proteins in 1843 species: Archae - 513; Bacteria - 14989; Metazoa - 3342; Fungi - 1673; Plants - 1075; Viruses - 3; Other Eukaryotes - 3255 (source: NCBI BLink).  protein_id AT3G22910.1p  transcript_id AT3G22910.1  protein_id AT3G22910.1p  transcript_id AT3G22910.1  
At3g22920	chr3:008122713	0.0	C/8122713-8123411	AT3G22920.1  CDS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative  note peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: ROC3; peptidyl-prolyl cis-trans isomerase (TAIR:AT2G16600.1); Has 5803 Blast hits to 5802 proteins in 822 species: Archae - 48; Bacteria - 956; Metazoa - 2174; Fungi - 763; Plants - 631; Viruses - 4; Other Eukaryotes - 1227 (source: NCBI BLink).  protein_id AT3G22920.1p  transcript_id AT3G22920.1  protein_id AT3G22920.1p  transcript_id AT3G22920.1  
At3g22930	chr3:008125533	0.0	C/8125533-8125835,8125366-8125446,8124286-8124423	AT3G22930.1  CDS  go_function calcium ion binding|GO:0005509||IEA  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calmodulin, putative  note calmodulin, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, LP.12 twelve leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: CAM8 (CALMODULIN 8); calcium ion binding (TAIR:AT4G14640.1); Has 70712 Blast hits to 24982 proteins in 1601 species: Archae - 0; Bacteria - 1213; Metazoa - 27649; Fungi - 9879; Plants - 4664; Viruses - 162; Other Eukaryotes - 27145 (source: NCBI BLink).  protein_id AT3G22930.1p  transcript_id AT3G22930.1  protein_id AT3G22930.1p  transcript_id AT3G22930.1  
At3g22937	chr3:008130269	0.0	C/8130269-8130907	AT3G22937.1  pseudogenic_transcript  pseudo  function unknown pseudogene  
At3g22940	chr3:008131468	0.0	W/8131468-8132706	AT3G22940.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G22421.1); Has 653 Blast hits to 626 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 653; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G22940.1p  transcript_id AT3G22940.1  protein_id AT3G22940.1p  transcript_id AT3G22940.1  
At3g22942	chr3:008134475	0.0	W/8134475-8134594,8135316-8135368,8135449-8135493,8135583-8135667	AT3G22942.1  CDS  gene_syn AGG2, G-PROTEIN GAMMA SUBUNIT 2  gene AGG2  function heterotrimeric G-protein gamma subunit 2(AGG2)  go_component plasma membrane|GO:0005886|17317660|IDA  go_component heterotrimeric G-protein complex|GO:0005834|11513956|ISS  go_process defense response to fungus, incompatible interaction|GO:0009817|18441222|IMP  go_process seed germination|GO:0009845|18441222|IMP  go_process basipetal auxin transport|GO:0010540|18441222|IMP  go_process lateral root development|GO:0048527|18441222|IMP  go_function molecular_function|GO:0003674||ND  product AGG2 (G-PROTEIN GAMMA SUBUNIT 2)  note G-PROTEIN GAMMA SUBUNIT 2 (AGG2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to fungus, incompatible interaction, basipetal auxin transport, seed germination, lateral root development; LOCATED IN: plasma membrane, heterotrimeric G-protein complex; EXPRESSED IN: root cortex, hydathode, root epidermis, differentiation zone, guard cell; BEST Arabidopsis thaliana protein match is: AGG1 (Arabidopsis Ggamma-subunit 1); GTP binding (TAIR:AT3G63420.2); Has 35 Blast hits to 35 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G22942.1p  transcript_id AT3G22942.1  protein_id AT3G22942.1p  transcript_id AT3G22942.1  
At3g22945	chr3:008135877	0.0	W/8135877-8136084	AT3G22945.1  pseudogenic_transcript  pseudo  gene_syn F5N5.13  note pseudogene, cyclophilin (fragment), blastp match of 59% identity and 2.2e-14 P-value to GP|1563719|emb|CAA69622.1||Y08320 cyclophylin {Digitalis lanata}  
At3g22950	chr3:008137322	0.0	C/8137322-8137513,8136364-8136723	AT3G22950.1  CDS  gene_syn ADP-ribosylation factor C1, ATARFC1  gene ATARFC1  function A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor GB:P91924 (Dugesia japonica), other ARFs and ARF-like proteins.  go_component intracellular|GO:0005622||IEA  go_component endomembrane system|GO:0012505||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function GTP binding|GO:0005525|12644670|ISS  product ATARFC1 (ADP-ribosylation factor C1); GTP binding  note ADP-ribosylation factor C1 (ATARFC1); FUNCTIONS IN: GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ARFA1D; GTP binding / phospholipase activator/ protein binding (TAIR:AT1G70490.3); Has 14008 Blast hits to 13998 proteins in 452 species: Archae - 21; Bacteria - 31; Metazoa - 6950; Fungi - 1702; Plants - 1833; Viruses - 3; Other Eukaryotes - 3468 (source: NCBI BLink).  protein_id AT3G22950.1p  transcript_id AT3G22950.1  protein_id AT3G22950.1p  transcript_id AT3G22950.1  
At3g22955	chr3:008138497	0.0	W/8138497-8138965	AT3G22955.1  mRNA_TE_gene  pseudo  gene_syn F5N5.3  note Transposable element gene, pseudogene, similar to orf315, blastp match of 48% identity and 2.0e-08 P-value to GP|9049281|dbj|BAA99291.1||AP000396 orf315 {Beta vulgaris}  
At3g22960	chr3:008139369	0.0	W/8139369-8139971,8140071-8140161,8140267-8140460,8140653-8140774,8140915-8141393,8141470-8141771	AT3G22960.1  CDS  gene_syn PKP-ALPHA, PKP1, PLASTIDIAL PYRUVATE KINASE 1  gene PKP-ALPHA  function encodes a chloroplast pyruvate kinase alpha subunit. Important for seed oil biosynthesis. Ubiquitously expressed, with significantly increased expression in maturing seeds.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component chloroplast|GO:0009507|17892448|IDA  go_component chloroplast stroma|GO:0009570|17557808|IDA  go_process glycolysis|GO:0006096||ISS  go_function pyruvate kinase activity|GO:0004743|17557808|IDA  go_function pyruvate kinase activity|GO:0004743||ISS  product PKP-ALPHA; pyruvate kinase  note PKP-ALPHA; FUNCTIONS IN: pyruvate kinase activity; INVOLVED IN: response to cadmium ion, glycolysis; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate kinase, C-terminal-like (InterPro:IPR015795), Pyruvate kinase, active site (InterPro:IPR018209), Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), Pyruvate kinase, alpha/beta (InterPro:IPR015794), Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate kinase (InterPro:IPR001697), Pyruvate kinase, barrel (InterPro:IPR015793); BEST Arabidopsis thaliana protein match is: PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1); pyruvate kinase (TAIR:AT5G52920.1); Has 6913 Blast hits to 6879 proteins in 1515 species: Archae - 99; Bacteria - 3207; Metazoa - 486; Fungi - 170; Plants - 279; Viruses - 0; Other Eukaryotes - 2672 (source: NCBI BLink).  protein_id AT3G22960.1p  transcript_id AT3G22960.1  protein_id AT3G22960.1p  transcript_id AT3G22960.1  
At3g22961	chr3:008142138	0.0	W/8142138-8142809	AT3G22961.1  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24093.1); Has 11 Blast hits to 11 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G22961.1p  transcript_id AT3G22961.1  protein_id AT3G22961.1p  transcript_id AT3G22961.1  
At3g22968	chr3:008152153	0.0	W/8152153-8152257	AT3G22968.1  CDS  gene_syn CPuORF59, Conserved peptide upstream open reading frame 59  gene CPuORF59  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF59 represents a conserved upstream opening reading frame relative to major ORF AT3G22970.1  product CPuORF59 (Conserved peptide upstream open reading frame 59)  note Conserved peptide upstream open reading frame 59 (CPuORF59); Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G22968.1p  transcript_id AT3G22968.1  protein_id AT3G22968.1p  transcript_id AT3G22968.1  
At3g22970	chr3:008152592	0.0	W/8152592-8152996,8153082-8153271,8153364-8153881	AT3G22970.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14620.1); Has 210 Blast hits to 209 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 208; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G22970.1p  transcript_id AT3G22970.1  protein_id AT3G22970.1p  transcript_id AT3G22970.1  
At3g22970	chr3:008152923	0.0	W/8152923-8152996,8153084-8153271,8153364-8153881	AT3G22970.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14620.1); Has 209 Blast hits to 209 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 207; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G22970.2p  transcript_id AT3G22970.2  protein_id AT3G22970.2p  transcript_id AT3G22970.2  
At3g22980	chr3:008160269	0.0	C/8160269-8163316	AT3G22980.1  CDS  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function translation factor activity, nucleic acid binding|GO:0008135||ISS  product elongation factor Tu family protein  note elongation factor Tu family protein; FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, GTPase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Elongation factor G, III and V (InterPro:IPR009022), Translation elongation factor EFG/EF2, domain IV (InterPro:IPR005517), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: LOS1; copper ion binding / translation elongation factor/ translation factor, nucleic acid binding (TAIR:AT1G56070.1); Has 50437 Blast hits to 41414 proteins in 4443 species: Archae - 1023; Bacteria - 26569; Metazoa - 3521; Fungi - 2240; Plants - 935; Viruses - 0; Other Eukaryotes - 16149 (source: NCBI BLink).  protein_id AT3G22980.1p  transcript_id AT3G22980.1  protein_id AT3G22980.1p  transcript_id AT3G22980.1  
At3g22990	chr3:008164015	0.0	W/8164015-8164207,8164305-8164474,8164558-8164691,8164789-8165045,8165245-8165350,8165444-8165582,8165674-8165801,8165890-8166145	AT3G22990.1  CDS  gene_syn LEAF AND FLOWER RELATED, LFR  gene LFR  function Armadillo-repeat containing protein. Involved in leaf and flower development. Located in nucleus. Broadly expressed throughout vegetative and floral tissues.  go_function binding|GO:0005488||IEA  go_component nucleus|GO:0005634|18846319|IDA  go_process flower development|GO:0009908|18846319|IMP  go_process leaf development|GO:0048366|18846319|IMP  product LFR (LEAF AND FLOWER RELATED); binding  note LEAF AND FLOWER RELATED (LFR); FUNCTIONS IN: binding; INVOLVED IN: flower development, leaf development; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); Has 44 Blast hits to 44 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 2; Plants - 14; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G22990.1p  transcript_id AT3G22990.1  protein_id AT3G22990.1p  transcript_id AT3G22990.1  
At3g23000	chr3:008172654	0.0	W/8172654-8173943	AT3G23000.1  CDS  gene_syn ATSR2, ATSRPK1, CBL-INTERACTING PROTEIN KINASE 7, CIPK7, PKS7, SNF1-RELATED PROTEIN KINASE 3.10, SnRK3.10  gene CIPK7  function Encodes a serine/threonine protein kinase with similarities to CBL-interacting protein kinases, SNF1 and SOS2.  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_process response to sucrose stimulus|GO:0009744|15665497|IEP  go_process response to glucose stimulus|GO:0009749|15665497|IEP  go_process response to fructose stimulus|GO:0009750|15665497|IEP  go_function kinase activity|GO:0016301||ISS  product CIPK7 (CBL-INTERACTING PROTEIN KINASE 7); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note CBL-INTERACTING PROTEIN KINASE 7 (CIPK7); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CIPK4 (CBL-interacting protein kinase 4); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT4G14580.1); Has 94259 Blast hits to 92718 proteins in 3023 species: Archae - 75; Bacteria - 8654; Metazoa - 40422; Fungi - 8634; Plants - 18076; Viruses - 483; Other Eukaryotes - 17915 (source: NCBI BLink).  protein_id AT3G23000.1p  transcript_id AT3G23000.1  protein_id AT3G23000.1p  transcript_id AT3G23000.1  
At3g23010	chr3:008174858	0.0	W/8174858-8176645	AT3G23010.1  CDS  gene_syn AtRLP36, Receptor Like Protein 36  gene AtRLP36  go_component cellular_component|GO:0005575||ND  go_process defense response|GO:0006952||ISS  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product AtRLP36 (Receptor Like Protein 36); protein binding  note Receptor Like Protein 36 (AtRLP36); FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction, defense response; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP38 (Receptor Like Protein 38); kinase/ protein binding (TAIR:AT3G23120.1); Has 61262 Blast hits to 17242 proteins in 751 species: Archae - 34; Bacteria - 3281; Metazoa - 17137; Fungi - 586; Plants - 36000; Viruses - 10; Other Eukaryotes - 4214 (source: NCBI BLink).  protein_id AT3G23010.1p  transcript_id AT3G23010.1  protein_id AT3G23010.1p  transcript_id AT3G23010.1  
At3g23020	chr3:008177215	0.0	C/8177215-8179743	AT3G23020.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G73710.1); Has 24235 Blast hits to 6171 proteins in 224 species: Archae - 8; Bacteria - 161; Metazoa - 541; Fungi - 500; Plants - 21890; Viruses - 0; Other Eukaryotes - 1135 (source: NCBI BLink).  protein_id AT3G23020.1p  transcript_id AT3G23020.1  protein_id AT3G23020.1p  transcript_id AT3G23020.1  
At3g23030	chr3:008181513	0.0	C/8181513-8181685,8181069-8181420	AT3G23030.1  CDS  gene_syn IAA2, INDOLE-3-ACETIC ACID INDUCIBLE 2  gene IAA2  function auxin inducible gene expressed in the nucleus  go_component nucleus|GO:0005634|8278386|IDA  go_process response to auxin stimulus|GO:0009733|7658471|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  product IAA2 (INDOLE-3-ACETIC ACID INDUCIBLE 2); transcription factor  note INDOLE-3-ACETIC ACID INDUCIBLE 2 (IAA2); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to auxin stimulus; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA1 (INDOLE-3-ACETIC ACID INDUCIBLE); protein binding / transcription factor (TAIR:AT4G14560.1); Has 1097 Blast hits to 1097 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1096; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G23030.1p  transcript_id AT3G23030.1  protein_id AT3G23030.1p  transcript_id AT3G23030.1  
At3g23040	chr3:008186080	0.0	W/8186080-8186146,8186781-8186890	AT3G23040.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G23040.1p  transcript_id AT3G23040.1  protein_id AT3G23040.1p  transcript_id AT3G23040.1  
At3g23050	chr3:008194768	0.0	W/8194768-8195006,8195564-8195817,8196075-8196210,8196523-8196584,8196676-8196716	AT3G23050.1  CDS  gene_syn AUXIN RESISTANT 2, AXR2, IAA7, INDOLE-3-ACETIC ACID 7  gene IAA7  function Transcription regulator acting as repressor of auxin-inducible gene expression. Plays role in the control of gravitropic growth and development in light-grown seedlings. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components.  go_component proteasome complex|GO:0000502|15994909|IDA  go_component nucleus|GO:0005634|15994909|IDA  go_component signalosome|GO:0008180|15994909|IDA  go_component SCF ubiquitin ligase complex|GO:0019005|15994909|IDA  go_process response to water deprivation|GO:0009414|8979397|IMP  go_process response to wounding|GO:0009611|16021335|IEP  go_process gravitropism|GO:0009630|2148800|IMP  go_process response to auxin stimulus|GO:0009733|12036262|TAS  go_process response to jasmonic acid stimulus|GO:0009753|16021335|IEP  go_process regulation of growth|GO:0040008|10859186|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product IAA7 (INDOLE-3-ACETIC ACID 7); transcription factor  note INDOLE-3-ACETIC ACID 7 (IAA7); FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: proteasome complex, signalosome, SCF ubiquitin ligase complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14); protein binding / transcription factor/ transcription repressor (TAIR:AT4G14550.1); Has 1025 Blast hits to 1025 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1024; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G23050.1p  transcript_id AT3G23050.1  protein_id AT3G23050.1p  transcript_id AT3G23050.1  
At3g23050	chr3:008194768	0.0	W/8194768-8195006,8195564-8195817,8196075-8196214	AT3G23050.2  CDS  gene_syn AUXIN RESISTANT 2, AXR2, IAA7, INDOLE-3-ACETIC ACID 7  gene IAA7  function Transcription regulator acting as repressor of auxin-inducible gene expression. Plays role in the control of gravitropic growth and development in light-grown seedlings. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components.  go_component proteasome complex|GO:0000502|15994909|IDA  go_component nucleus|GO:0005634|15994909|IDA  go_component signalosome|GO:0008180|15994909|IDA  go_component SCF ubiquitin ligase complex|GO:0019005|15994909|IDA  go_process response to water deprivation|GO:0009414|8979397|IMP  go_process response to wounding|GO:0009611|16021335|IEP  go_process gravitropism|GO:0009630|2148800|IMP  go_process response to auxin stimulus|GO:0009733|12036262|TAS  go_process response to jasmonic acid stimulus|GO:0009753|16021335|IEP  go_process regulation of growth|GO:0040008|10859186|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product IAA7 (INDOLE-3-ACETIC ACID 7); transcription factor  note INDOLE-3-ACETIC ACID 7 (IAA7); FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: proteasome complex, signalosome, SCF ubiquitin ligase complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14); protein binding / transcription factor/ transcription repressor (TAIR:AT4G14550.1); Has 809 Blast hits to 809 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 808; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G23050.2p  transcript_id AT3G23050.2  protein_id AT3G23050.2p  transcript_id AT3G23050.2  
At3g23060	chr3:008200868	0.0	W/8200868-8200973,8201364-8201463,8201542-8201956,8202041-8202543,8202631-8202681,8202770-8202842,8202922-8203116	AT3G23060.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: DRIP1 (DREB2A-INTERACTING PROTEIN 1); protein binding / ubiquitin-protein ligase/ zinc ion binding (TAIR:AT1G06770.2); Has 1611 Blast hits to 1596 proteins in 124 species: Archae - 0; Bacteria - 4; Metazoa - 1283; Fungi - 50; Plants - 118; Viruses - 3; Other Eukaryotes - 153 (source: NCBI BLink).  protein_id AT3G23060.1p  transcript_id AT3G23060.1  protein_id AT3G23060.1p  transcript_id AT3G23060.1  
At3g23070	chr3:008203548	0.0	W/8203548-8204402,8204572-8205049,8205133-8205263,8205557-8205913,8206026-8206182,8206270-8206562,8206641-8206700,8206833-8206922,8207019-8207243	AT3G23070.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_function RNA binding|GO:0003723||IEA  product RNA binding  note RNA binding; FUNCTIONS IN: RNA binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA binding (TAIR:AT4G14510.1); Has 525 Blast hits to 475 proteins in 91 species: Archae - 3; Bacteria - 33; Metazoa - 125; Fungi - 50; Plants - 253; Viruses - 3; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT3G23070.1p  transcript_id AT3G23070.1  protein_id AT3G23070.1p  transcript_id AT3G23070.1  
At3g23080	chr3:008208859	0.0	C/8208859-8209088,8208616-8208781,8208368-8208544,8208225-8208308,8207612-8208121	AT3G23080.2  CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14500.1); Has 247 Blast hits to 246 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 162; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G23080.2p  transcript_id AT3G23080.2  protein_id AT3G23080.2p  transcript_id AT3G23080.2  
At3g23080	chr3:008208859	0.0	C/8208859-8209181,8208616-8208781,8208368-8208544,8208225-8208308,8207612-8208121	AT3G23080.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14500.1); Has 247 Blast hits to 246 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 162; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G23080.1p  transcript_id AT3G23080.1  protein_id AT3G23080.1p  transcript_id AT3G23080.1  
At3g23085	chr3:008209764	0.0	C/8209764-8211155	AT3G23085.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 1.1e-91 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At3g23090	chr3:008216980	0.0	C/8216980-8216983,8215697-8216145,8215530-8215603,8215353-8215446,8215175-8215246,8214863-8214973,8214533-8214745	AT3G23090.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, leaf apex, hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Targeting for Xklp2 (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: WDL1 (TAIR:AT3G04630.3); Has 483 Blast hits to 450 proteins in 87 species: Archae - 2; Bacteria - 15; Metazoa - 188; Fungi - 17; Plants - 148; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).  protein_id AT3G23090.1p  transcript_id AT3G23090.1  protein_id AT3G23090.1p  transcript_id AT3G23090.1  
At3g23100	chr3:008220721	0.0	W/8220721-8220910,8221001-8221143,8221240-8221368,8221537-8221659,8221782-8221991	AT3G23100.1  CDS  gene_syn XRCC4  gene XRCC4  function A. thaliana homologue of the human DNA ligase IV-binding protein XRCC4. Yeast two-hybrid analysis demonstrated a strong interaction between A. thaliana DNA ligase IV and the A. thaliana homologue of the human DNA ligase IV-binding protein XRCC4. This interaction is shown to be mediated via the tandem BRCA C-terminal domains of A. thaliana DNA ligase IV protein.  go_component nucleus|GO:0005634||IEA  go_process double-strand break repair|GO:0006302||IEA  go_process DNA recombination|GO:0006310||IEA  go_process metabolic process|GO:0008152||IEA  go_function protein C-terminus binding|GO:0008022|11029705|IPI  product XRCC4; protein C-terminus binding  note XRCC4; FUNCTIONS IN: protein C-terminus binding; INVOLVED IN: double-strand break repair, metabolic process, DNA recombination; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Carbamoyl phosphate synthetase, large subunit, ATP-binding (InterPro:IPR005479), DNA double-strand break repair and VJ recombination XRCC4, C-terminal (InterPro:IPR014751); BEST Arabidopsis thaliana protein match is: tolA protein-related (TAIR:AT1G61410.1); Has 170 Blast hits to 163 proteins in 43 species: Archae - 0; Bacteria - 3; Metazoa - 80; Fungi - 6; Plants - 35; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT3G23100.1p  transcript_id AT3G23100.1  protein_id AT3G23100.1p  transcript_id AT3G23100.1  
At3g23100	chr3:008220721	0.0	W/8220721-8220910,8221001-8221143,8221240-8221368,8221537-8221659,8221782-8221991	AT3G23100.2  CDS  gene_syn XRCC4  gene XRCC4  function A. thaliana homologue of the human DNA ligase IV-binding protein XRCC4. Yeast two-hybrid analysis demonstrated a strong interaction between A. thaliana DNA ligase IV and the A. thaliana homologue of the human DNA ligase IV-binding protein XRCC4. This interaction is shown to be mediated via the tandem BRCA C-terminal domains of A. thaliana DNA ligase IV protein.  go_component nucleus|GO:0005634||IEA  go_process double-strand break repair|GO:0006302||IEA  go_process DNA recombination|GO:0006310||IEA  go_process metabolic process|GO:0008152||IEA  go_function protein C-terminus binding|GO:0008022|11029705|IPI  product XRCC4; protein C-terminus binding  note XRCC4; FUNCTIONS IN: protein C-terminus binding; INVOLVED IN: double-strand break repair, DNA recombination, metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Carbamoyl phosphate synthetase, large subunit, ATP-binding (InterPro:IPR005479), DNA double-strand break repair and VJ recombination XRCC4, C-terminal (InterPro:IPR014751); BEST Arabidopsis thaliana protein match is: tolA protein-related (TAIR:AT1G61410.1).  protein_id AT3G23100.2p  transcript_id AT3G23100.2  protein_id AT3G23100.2p  transcript_id AT3G23100.2  
At3g23110	chr3:008222364	0.0	C/8222364-8224871	AT3G23110.1  CDS  gene_syn AtRLP37, Receptor Like Protein 37  gene AtRLP37  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  go_function kinase activity|GO:0016301||ISS  product AtRLP37 (Receptor Like Protein 37); kinase/ protein binding  note Receptor Like Protein 37 (AtRLP37); FUNCTIONS IN: protein binding, kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP38 (Receptor Like Protein 38); kinase/ protein binding (TAIR:AT3G23120.1); Has 73523 Blast hits to 21009 proteins in 788 species: Archae - 37; Bacteria - 4548; Metazoa - 22901; Fungi - 777; Plants - 39703; Viruses - 19; Other Eukaryotes - 5538 (source: NCBI BLink).  protein_id AT3G23110.1p  transcript_id AT3G23110.1  protein_id AT3G23110.1p  transcript_id AT3G23110.1  
At3g23109	chr3:008226791	0.0	W/8226791-8227003	AT3G23109.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G61410; tolA protein-related  
At3g23120	chr3:008227222	0.0	C/8227222-8229576	AT3G23120.1  CDS  gene_syn AtRLP38, Receptor Like Protein 38  gene AtRLP38  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  go_function kinase activity|GO:0016301||ISS  product AtRLP38 (Receptor Like Protein 38); kinase/ protein binding  note Receptor Like Protein 38 (AtRLP38); FUNCTIONS IN: protein binding, kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP37 (Receptor Like Protein 37); kinase/ protein binding (TAIR:AT3G23110.1); Has 77194 Blast hits to 22480 proteins in 833 species: Archae - 38; Bacteria - 4733; Metazoa - 26029; Fungi - 914; Plants - 39721; Viruses - 22; Other Eukaryotes - 5737 (source: NCBI BLink).  protein_id AT3G23120.1p  transcript_id AT3G23120.1  protein_id AT3G23120.1p  transcript_id AT3G23120.1  
At3g23125	chr3:008236161	0.0	W/8236161-8236246	AT3G23125.1  miRNA  gene_syn MICRORNA 173, MIR173  gene MIR173  function Encodes a microRNA that targets the TAS1 and TAS2 families of tasiRNA-generating transcripts. Cleavage of TAS1 and TAS2 transcripts by miR173 initiates processing of these transcripts in a 21-nucleotide register. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUCGCUUGCAGAGAGAAAUCAC  go_process gene silencing by miRNA|GO:0035195|15851028|IDA  product MIR173 (MICRORNA 173); miRNA  transcript_id AT3G23125.1  
At3g23130	chr3:008242504	0.0	W/8242504-8243118	AT3G23130.1  CDS  gene_syn FLO10, FLORAL DEFECTIVE 10, FLORAL ORGAN NUMBER 1, FON1, SUP, SUPERMAN  gene SUP  function Flower-specific gene controlling the boundary of the stamen and carpel whorls. Similar to zinc finger transcription factors.  go_component intracellular|GO:0005622||IEA  go_process flower development|GO:0009908|7477325|IMP  go_process specification of floral organ identity|GO:0010093|7477325|IGI  go_process negative regulation of transcription|GO:0016481|11943180|IMP  go_function nucleic acid binding|GO:0003676||ISS  go_function DNA binding|GO:0003677|11943180|TAS  go_function DNA binding|GO:0003677|12433998|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11943180|IMP  go_function transcription factor activity|GO:0003700|7477325|TAS  go_function zinc ion binding|GO:0008270||ISS  product SUP (SUPERMAN); DNA binding / nucleic acid binding / transcription factor/ zinc ion binding  note SUPERMAN (SUP); FUNCTIONS IN: transcription factor activity, DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: flower development, negative regulation of transcription, specification of floral organ identity; LOCATED IN: intracellular; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: ZFP10 (ZINC-FINGER PROTEIN 10); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT2G37740.1); Has 402 Blast hits to 400 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 0; Plants - 372; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G23130.1p  transcript_id AT3G23130.1  protein_id AT3G23130.1p  transcript_id AT3G23130.1  
At3g23140	chr3:008250579	0.0	W/8250579-8251097	AT3G23140.1  CDS  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT5G43540.1); Has 334 Blast hits to 332 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 4; Plants - 316; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G23140.1p  transcript_id AT3G23140.1  protein_id AT3G23140.1p  transcript_id AT3G23140.1  
At3g23145	chr3:008252138	0.0	W/8252138-8252200,8252359-8252457,8252641-8252826,8252953-8253016,8253132-8253196	AT3G23145.1  CDS  gene_syn K14B15.3  go_component cytoplasm|GO:0005737||IEA  go_process translation|GO:0006412||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function ATP binding|GO:0005524||IEA  product ATP binding / aminoacyl-tRNA ligase/ nucleotide binding  note ATP binding / aminoacyl-tRNA ligase/ nucleotide binding; FUNCTIONS IN: nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300), Isoleucyl-tRNA synthetase (InterPro:IPR018353); BEST Arabidopsis thaliana protein match is: isoleucyl-tRNA synthetase, putative / isoleucine--tRNA ligase, putative (TAIR:AT4G10320.1).  protein_id AT3G23145.1p  transcript_id AT3G23145.1  protein_id AT3G23145.1p  transcript_id AT3G23145.1  
At3g23150	chr3:008255156	0.0	W/8255156-8256922,8257006-8257560	AT3G23150.1  CDS  gene_syn ETR2, ethylene response 2  gene ETR2  function Involved in ethylene perception in Arabidopsis  go_component endoplasmic reticulum membrane|GO:0005789||IEA  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process negative regulation of ethylene mediated signaling pathway|GO:0010105|9576967|TAS  go_function protein histidine kinase activity|GO:0004673||ISS  go_function glycogen synthase kinase 3 activity|GO:0004696|15703053|TAS  go_function receptor activity|GO:0004872|9576967|TAS  go_function ethylene binding|GO:0051740|15703053|IDA  product ETR2 (ethylene response 2); ethylene binding / glycogen synthase kinase 3/ protein histidine kinase/ receptor  note ethylene response 2 (ETR2); FUNCTIONS IN: ethylene binding, receptor activity, protein histidine kinase activity, glycogen synthase kinase 3 activity; INVOLVED IN: negative regulation of ethylene mediated signaling pathway; LOCATED IN: endomembrane system, endoplasmic reticulum membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), CheY-like (InterPro:IPR011006), Signal transduction histidine kinase, hybrid-type, ethylene sensor (InterPro:IPR014525), Signal transduction response regulator, receiver region (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region (InterPro:IPR003661), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: EIN4 (ETHYLENE INSENSITIVE 4); ethylene binding / glycogen synthase kinase 3/ protein histidine kinase/ receptor (TAIR:AT3G04580.2); Has 19082 Blast hits to 16433 proteins in 1273 species: Archae - 75; Bacteria - 15666; Metazoa - 8; Fungi - 838; Plants - 1037; Viruses - 6; Other Eukaryotes - 1452 (source: NCBI BLink).  protein_id AT3G23150.1p  transcript_id AT3G23150.1  protein_id AT3G23150.1p  transcript_id AT3G23150.1  
At3g23160	chr3:008260059	0.0	C/8260059-8261654	AT3G23160.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF668 (InterPro:IPR007700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04550.1); Has 214 Blast hits to 144 proteins in 12 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 207; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G23160.1p  transcript_id AT3G23160.1  protein_id AT3G23160.1p  transcript_id AT3G23160.1  
At3g23165	chr3:008265003	0.0	C/8265003-8265060,8264650-8264825	AT3G23165.1  CDS  gene_syn LCR42, Low-molecular-weight cysteine-rich 42  gene LCR42  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR42 (Low-molecular-weight cysteine-rich 42)  note Low-molecular-weight cysteine-rich 42 (LCR42); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: LCR41 (Low-molecular-weight cysteine-rich 41) (TAIR:AT3G04943.1); Has 9 Blast hits to 9 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G23165.1p  transcript_id AT3G23165.1  protein_id AT3G23165.1p  transcript_id AT3G23165.1  
At3g23167	chr3:008266528	0.0	C/8266528-8266585,8266218-8266393	AT3G23167.1  CDS  gene_syn LCR39, Low-molecular-weight cysteine-rich 39  gene LCR39  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR39 (Low-molecular-weight cysteine-rich 39)  note Low-molecular-weight cysteine-rich 39 (LCR39); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: LCR40 (Low-molecular-weight cysteine-rich 40) (TAIR:AT2G14935.1); Has 9 Blast hits to 9 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G23167.1p  transcript_id AT3G23167.1  protein_id AT3G23167.1p  transcript_id AT3G23167.1  
At3g23170	chr3:008268265	0.0	C/8268265-8268588	AT3G23170.1  CDS  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14450.1); Has 63 Blast hits to 63 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G23170.1p  transcript_id AT3G23170.1  protein_id AT3G23170.1p  transcript_id AT3G23170.1  
At3g23171	chr3:008269716	0.0	C/8269716-8269859	AT3G23171.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G23171.1p  transcript_id AT3G23171.1  protein_id AT3G23171.1p  transcript_id AT3G23171.1  
At3g23172	chr3:008272613	0.0	C/8272613-8272657,8272386-8272468,8272138-8272279	AT3G23172.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G23172.1p  transcript_id AT3G23172.1  protein_id AT3G23172.1p  transcript_id AT3G23172.1  
At3g23175	chr3:008274849	0.0	C/8274849-8274973,8274540-8274762,8274387-8274449,8274202-8274300	AT3G23175.1  CDS  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product lesion inducing protein-related  note lesion inducing protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: HR-like lesion-inducer (InterPro:IPR008637); BEST Arabidopsis thaliana protein match is: lesion inducing protein-related (TAIR:AT4G14420.1); Has 61 Blast hits to 61 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G23175.1p  transcript_id AT3G23175.1  protein_id AT3G23175.1p  transcript_id AT3G23175.1  
At3g23180	chr3:008277131	0.0	W/8277131-8277249,8277516-8277681,8277854-8277952,8278045-8278143,8278226-8278396	AT3G23180.1  CDS  go_component membrane|GO:0016020|11152613|ISS  go_process defense response|GO:0006952||ISS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: HR-like lesion-inducer (InterPro:IPR008637); BEST Arabidopsis thaliana protein match is: lesion inducing protein-related (TAIR:AT3G23190.1); Has 68 Blast hits to 68 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G23180.1p  transcript_id AT3G23180.1  protein_id AT3G23180.1p  transcript_id AT3G23180.1  
At3g23190	chr3:008279445	0.0	W/8279445-8279563,8279670-8279733,8279812-8279901,8279995-8280093,8280201-8280305,8280389-8280463,8280565-8280663	AT3G23190.1  CDS  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product lesion inducing protein-related  note lesion inducing protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: hypocotyl, root, callus; CONTAINS InterPro DOMAIN/s: HR-like lesion-inducer (InterPro:IPR008637); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23180.1); Has 68 Blast hits to 68 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G23190.1p  transcript_id AT3G23190.1  protein_id AT3G23190.1p  transcript_id AT3G23190.1  
At3g23200	chr3:008281659	0.0	W/8281659-8281789,8282184-8282316,8282409-8282603	AT3G23200.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53850.1); Has 100 Blast hits to 100 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G23200.1p  transcript_id AT3G23200.1  protein_id AT3G23200.1p  transcript_id AT3G23200.1  
At3g23210	chr3:008284857	0.0	C/8284857-8284915,8284281-8284685,8283940-8284017,8283680-8283842,8283255-8283512	AT3G23210.1  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT4G14410.1); Has 430 Blast hits to 428 proteins in 55 species: Archae - 2; Bacteria - 9; Metazoa - 31; Fungi - 0; Plants - 361; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT3G23210.1p  transcript_id AT3G23210.1  protein_id AT3G23210.1p  transcript_id AT3G23210.1  
At3g23220	chr3:008287969	0.0	W/8287969-8288388	AT3G23220.1  CDS  function encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.  go_component nucleus|GO:0005634|10715325|TAS  go_component nucleus|GO:0005634|9687012|TAS  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process ethylene mediated signaling pathway|GO:0009873|10715325|TAS  go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|10715325|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9687012|TAS  go_function transcription factor activity|GO:0003700||ISS  product DNA binding / transcription factor  note DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: ethylene mediated signaling pathway, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene-responsive factor, putative (TAIR:AT5G43410.1); Has 3805 Blast hits to 3664 proteins in 200 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3795; Viruses - 2; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT3G23220.1p  transcript_id AT3G23220.1  protein_id AT3G23220.1p  transcript_id AT3G23220.1  
At3g23230	chr3:008289647	0.0	C/8289647-8290066	AT3G23230.1  CDS  function encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS  go_process response to chitin|GO:0010200|17722694|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9687012|TAS  go_function transcription factor activity|GO:0003700||ISS  product ethylene-responsive factor, putative  note ethylene-responsive factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: ethylene mediated signaling pathway, response to chitin, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: shoot apex, hypocotyl, root, petiole, leaf; EXPRESSED DURING: LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT3G23220.1); Has 3834 Blast hits to 3685 proteins in 199 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 3819; Viruses - 2; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT3G23230.1p  transcript_id AT3G23230.1  protein_id AT3G23230.1p  transcript_id AT3G23230.1  
At3g23240	chr3:008295705	0.0	W/8295705-8296361	AT3G23240.1  CDS  gene_syn ATERF1, ERF1, ETHYLENE RESPONSE FACTOR 1  gene ERF1  function encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ERF1). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. EREBP like protein that binds GCC box of ethylene regulated promoters such as basic chitinases. Constitutive expression of ERF1 phenocopies ethylene over production. Involved in ethylene signaling cascade,downstream of EIN2 and EIN3.  go_component nucleus|GO:0005634|12509529|TAS  go_component nucleus|GO:0005634|9851977|TAS  go_process regulation of transcription, DNA-dependent|GO:0006355|10715325|TAS  go_process defense response|GO:0006952|12509529|IMP  go_process jasmonic acid mediated signaling pathway|GO:0009867|12509529|TAS  go_process ethylene mediated signaling pathway|GO:0009873|9851977|IGI  go_process ethylene mediated signaling pathway|GO:0009873|9851977|TAS  go_function DNA binding|GO:0003677|10715325|TAS  go_function DNA binding|GO:0003677|9851977|IDA  go_function transcription factor activity|GO:0003700|10715325|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9851977|TAS  go_function transcription activator activity|GO:0016563|10715325|TAS  product ERF1 (ETHYLENE RESPONSE FACTOR 1); DNA binding / transcription activator/ transcription factor  note ETHYLENE RESPONSE FACTOR 1 (ERF1); FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: ethylene mediated signaling pathway, regulation of transcription, DNA-dependent, jasmonic acid mediated signaling pathway, defense response; LOCATED IN: nucleus; EXPRESSED IN: stem, hypocotyl, stamen, leaf; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59); DNA binding / transcription activator/ transcription factor (TAIR:AT1G06160.1); Has 3856 Blast hits to 3679 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3840; Viruses - 2; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT3G23240.1p  transcript_id AT3G23240.1  protein_id AT3G23240.1p  transcript_id AT3G23240.1  
At3g23245	chr3:008300765	0.0	C/8300765-8300833,8300381-8300665	AT3G23245.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 3 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 0; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G23245.1p  transcript_id AT3G23245.1  protein_id AT3G23245.1p  transcript_id AT3G23245.1  
At3g23250	chr3:008309492	0.0	W/8309492-8309624,8309704-8309833,8310030-8310624	AT3G23250.1  CDS  gene_syn ATMYB15, ATY19, MYB DOMAIN PROTEIN 15, MYB15  gene MYB15  function Member of the R2R3 factor gene family.  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to chitin|GO:0010200|17722694|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB15 (MYB DOMAIN PROTEIN 15); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 15 (MYB15); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 7 processes; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB14 (MYB DOMAIN PROTEIN 14); DNA binding / transcription factor (TAIR:AT2G31180.1); Has 6366 Blast hits to 5891 proteins in 362 species: Archae - 0; Bacteria - 0; Metazoa - 651; Fungi - 315; Plants - 3788; Viruses - 4; Other Eukaryotes - 1608 (source: NCBI BLink).  protein_id AT3G23250.1p  transcript_id AT3G23250.1  protein_id AT3G23250.1p  transcript_id AT3G23250.1  
At3g23250	chr3:008309742	0.0	W/8309742-8309833,8310030-8310624	AT3G23250.2  CDS  gene_syn ATMYB15, ATY19, MYB DOMAIN PROTEIN 15, MYB15  gene MYB15  function Member of the R2R3 factor gene family.  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to chitin|GO:0010200|17722694|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB15 (MYB DOMAIN PROTEIN 15); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 15 (MYB15); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 7 processes; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: ATMYB13 (MYB DOMAIN PROTEIN 13); DNA binding / transcription factor (TAIR:AT1G06180.1); Has 5044 Blast hits to 4681 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 514; Fungi - 56; Plants - 3579; Viruses - 6; Other Eukaryotes - 889 (source: NCBI BLink).  protein_id AT3G23250.2p  transcript_id AT3G23250.2  protein_id AT3G23250.2p  transcript_id AT3G23250.2  
At3g23255	chr3:008311795	0.0	W/8311795-8311886,8311966-8312086,8312157-8312200,8312275-8312391,8312487-8312570,8312650-8312753,8312835-8312947	AT3G23255.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 29 Blast hits to 29 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G23255.1p  transcript_id AT3G23255.1  protein_id AT3G23255.1p  transcript_id AT3G23255.1  
At3g23260	chr3:008313334	0.0	W/8313334-8314422	AT3G23260.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G21130.1); Has 1028 Blast hits to 999 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1026; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G23260.1p  transcript_id AT3G23260.1  protein_id AT3G23260.1p  transcript_id AT3G23260.1  
At3g23270	chr3:008316436	0.0	W/8316436-8316486,8316667-8316753,8316896-8316985,8317069-8317143,8317231-8317329,8317419-8319473,8319580-8319711,8319789-8320337	AT3G23270.1  CDS  go_component cellular_component|GO:0005575||ND  go_process signal transduction|GO:0007165|15358268|ISS  go_function chromatin binding|GO:0003682||ISS  go_function Ran GTPase binding|GO:0008536||ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product regulator of chromosome condensation (RCC1) family protein  note regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: chromatin binding, phosphoinositide binding, Ran GTPase binding; INVOLVED IN: signal transduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Pleckstrin homology (InterPro:IPR001849), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Zinc finger, FYVE-type (InterPro:IPR000306), Zinc finger, FYVE-related (InterPro:IPR017455), Pleckstrin homology-type (InterPro:IPR011993), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT4G14368.1); Has 19808 Blast hits to 8160 proteins in 410 species: Archae - 42; Bacteria - 1537; Metazoa - 8626; Fungi - 1295; Plants - 1636; Viruses - 10; Other Eukaryotes - 6662 (source: NCBI BLink).  protein_id AT3G23270.1p  transcript_id AT3G23270.1  protein_id AT3G23270.1p  transcript_id AT3G23270.1  
At3g23280	chr3:008321588	0.0	W/8321588-8321689,8321786-8321900,8322143-8322223,8322320-8322408,8322510-8322601,8322723-8322804,8322912-8323014,8323099-8323170,8323363-8323448,8323543-8324109	AT3G23280.1  CDS  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein  note zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein (TAIR:AT4G14365.1); Has 22188 Blast hits to 12179 proteins in 569 species: Archae - 39; Bacteria - 1262; Metazoa - 12175; Fungi - 1011; Plants - 663; Viruses - 384; Other Eukaryotes - 6654 (source: NCBI BLink).  protein_id AT3G23280.1p  transcript_id AT3G23280.1  protein_id AT3G23280.1p  transcript_id AT3G23280.1  
At3g23280	chr3:008321588	0.0	W/8321588-8321689,8321786-8321900,8322143-8322223,8322320-8322408,8322510-8322601,8322723-8322804,8322912-8323014,8323363-8323448,8323543-8324109	AT3G23280.2  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein  note zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein (TAIR:AT4G14365.1); Has 22221 Blast hits to 12172 proteins in 569 species: Archae - 39; Bacteria - 1262; Metazoa - 12213; Fungi - 1009; Plants - 663; Viruses - 384; Other Eukaryotes - 6651 (source: NCBI BLink).  protein_id AT3G23280.2p  transcript_id AT3G23280.2  protein_id AT3G23280.2p  transcript_id AT3G23280.2  
At3g23290	chr3:008326958	0.0	W/8326958-8327242,8327708-8328010	AT3G23290.2  CDS  gene_syn LIGHT SENSITIVE HYPOCOTYLS 4, LSH4  gene LSH4  product LSH4 (LIGHT SENSITIVE HYPOCOTYLS 4)  note LIGHT SENSITIVE HYPOCOTYLS 4 (LSH4); EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: LSH3 (LIGHT SENSITIVE HYPOCOTYLS 3) (TAIR:AT2G31160.1); Has 185 Blast hits to 185 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G23290.2p  transcript_id AT3G23290.2  protein_id AT3G23290.2p  transcript_id AT3G23290.2  
At3g23300	chr3:008333521	0.0	W/8333521-8333760,8333843-8334007,8334088-8334270,8334351-8334945,8335070-8335182,8335277-8335497,8335584-8335902	AT3G23300.1  CDS  go_component nucleus|GO:0005634|14617066|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  product dehydration-responsive protein-related  note dehydration-responsive protein-related; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, plasma membrane, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive protein-related (TAIR:AT4G14360.2); Has 537 Blast hits to 524 proteins in 45 species: Archae - 0; Bacteria - 42; Metazoa - 0; Fungi - 0; Plants - 475; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT3G23300.1p  transcript_id AT3G23300.1  protein_id AT3G23300.1p  transcript_id AT3G23300.1  
At3g23310	chr3:008339799	0.0	W/8339799-8340022,8340368-8340542,8340942-8341025,8341106-8341347,8341445-8341670,8341823-8341902,8341998-8342082,8342234-8342365,8342455-8342568,8342682-8342729,8342865-8342949,8343041-8343097,8343201-8343355	AT3G23310.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase, C-terminal (InterPro:IPR017892), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G14350.3); Has 79428 Blast hits to 78405 proteins in 2456 species: Archae - 57; Bacteria - 7287; Metazoa - 33281; Fungi - 7809; Plants - 14818; Viruses - 393; Other Eukaryotes - 15783 (source: NCBI BLink).  protein_id AT3G23310.1p  transcript_id AT3G23310.1  protein_id AT3G23310.1p  transcript_id AT3G23310.1  
At3g23320	chr3:008344629	0.0	W/8344629-8345204	AT3G23320.1  CDS  gene_syn MLM24.4  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT5G65005.1); Has 121 Blast hits to 121 proteins in 6 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 119; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G23320.1p  transcript_id AT3G23320.1  protein_id AT3G23320.1p  transcript_id AT3G23320.1  
At3g23325	chr3:008345808	0.0	W/8345808-8345813,8345998-8346083,8346168-8346291,8346809-8346856	AT3G23325.1  CDS  go_component cellular_component|GO:0005575||ND  go_process mRNA processing|GO:0006397||ISS  go_function molecular_function|GO:0003674||ND  product splicing factor, putative  note splicing factor, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor 3B subunit 5/RDS3 complex subunit 10 (InterPro:IPR009846), Splicing factor 3B, subunit 5 (InterPro:IPR017089); BEST Arabidopsis thaliana protein match is: pre-mRNA splicing factor 10 kDa subunit, putative (TAIR:AT4G14342.1); Has 220 Blast hits to 220 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 90; Fungi - 61; Plants - 31; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT3G23325.1p  transcript_id AT3G23325.1  protein_id AT3G23325.1p  transcript_id AT3G23325.1  
At3g23326	chr3:008346393	0.0	W/8346393-8346639	AT3G23326.1  miRNA  gene_syn MICRORNA853A, MIR853A  gene MIR853A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCCCCUCUUUAGCUUGGAGAAG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR853A (MICRORNA853A); miRNA  transcript_id AT3G23326.1  
At3g23330	chr3:008347200	0.0	W/8347200-8347668,8347777-8349347	AT3G23330.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: DOT4 (DEFECTIVELY ORGANIZED TRIBUTARIES 4) (TAIR:AT4G18750.1); Has 14095 Blast hits to 5258 proteins in 169 species: Archae - 0; Bacteria - 10; Metazoa - 46; Fungi - 59; Plants - 13671; Viruses - 0; Other Eukaryotes - 309 (source: NCBI BLink).  protein_id AT3G23330.1p  transcript_id AT3G23330.1  protein_id AT3G23330.1p  transcript_id AT3G23330.1  
At3g23340	chr3:008351047	0.0	W/8351047-8351122,8351232-8351272,8351484-8351553,8351642-8351790,8351886-8351981,8352069-8352139,8352269-8352330,8352443-8352506,8352599-8352683,8352780-8352906,8352997-8353070,8353180-8353243,8353340-8353458,8353561-8353791	AT3G23340.1  CDS  gene_syn Casein Kinase I-like 10, ckl10  gene ckl10  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product ckl10 (Casein Kinase I-like 10); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note Casein Kinase I-like 10 (ckl10); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CKI1 (CASEIN KINASE I); kinase/ protein serine/threonine kinase (TAIR:AT4G14340.1); Has 42407 Blast hits to 42138 proteins in 1354 species: Archae - 10; Bacteria - 5142; Metazoa - 18660; Fungi - 4114; Plants - 5147; Viruses - 314; Other Eukaryotes - 9020 (source: NCBI BLink).  protein_id AT3G23340.1p  transcript_id AT3G23340.1  protein_id AT3G23340.1p  transcript_id AT3G23340.1  
At3g23350	chr3:008354104	0.0	W/8354104-8354210,8354293-8354415,8354494-8354661,8354754-8355201	AT3G23350.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Epsin, N-terminal (InterPro:IPR001026), Epsin-like, N-terminal (InterPro:IPR013809), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (TAIR:AT3G46540.1); Has 40 Blast hits to 40 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G23350.1p  transcript_id AT3G23350.1  protein_id AT3G23350.1p  transcript_id AT3G23350.1  
At3g23360	chr3:008356349	0.0	C/8356349-8356381,8356002-8356271,8355677-8355896,8355464-8355573,8355257-8355394	AT3G23360.1  CDS  go_function catalytic activity|GO:0003824||IEA  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: fruit; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT4G28400.1); Has 1019 Blast hits to 1017 proteins in 162 species: Archae - 0; Bacteria - 20; Metazoa - 330; Fungi - 90; Plants - 457; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT3G23360.1p  transcript_id AT3G23360.1  protein_id AT3G23360.1p  transcript_id AT3G23360.1  
At3g23370	chr3:008357613	0.0	W/8357613-8357667,8357806-8357899,8358219-8359545,8359666-8359743,8359863-8360162,8360249-8360505,8360588-8360792	AT3G23370.2  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504); Has 411 Blast hits to 244 proteins in 83 species: Archae - 2; Bacteria - 144; Metazoa - 92; Fungi - 54; Plants - 14; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT3G23370.2p  transcript_id AT3G23370.2  protein_id AT3G23370.2p  transcript_id AT3G23370.2  
At3g23370	chr3:008357613	0.0	W/8357613-8357667,8357806-8357899,8358219-8359743,8359863-8360162,8360249-8360505,8360588-8360792	AT3G23370.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504); Has 642 Blast hits to 275 proteins in 83 species: Archae - 2; Bacteria - 326; Metazoa - 93; Fungi - 68; Plants - 20; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).  protein_id AT3G23370.1p  transcript_id AT3G23370.1  protein_id AT3G23370.1p  transcript_id AT3G23370.1  
At3g23380	chr3:008373947	0.0	W/8373947-8374004,8374098-8374198,8374286-8374708	AT3G23380.1  CDS  gene_syn RIC5, ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 5  gene RIC5  function encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Gene is expressed predominantly in inflorescence and flower tissue.  go_component apical plasma membrane|GO:0016324|11752391|IDA  go_process pollen tube growth|GO:0009860|11752391|IMP  go_function protein binding|GO:0005515|11752391|IDA  product RIC5 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 5); protein binding  note ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 5 (RIC5); FUNCTIONS IN: protein binding; INVOLVED IN: pollen tube growth; LOCATED IN: apical plasma membrane; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095); BEST Arabidopsis thaliana protein match is: RIC1 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 1); protein binding (TAIR:AT2G33460.1); Has 141 Blast hits to 141 proteins in 33 species: Archae - 0; Bacteria - 8; Metazoa - 28; Fungi - 6; Plants - 86; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT3G23380.1p  transcript_id AT3G23380.1  protein_id AT3G23380.1p  transcript_id AT3G23380.1  
At3g23390	chr3:008375427	0.0	W/8375427-8375429,8375647-8375826,8376005-8376079,8376165-8376224	AT3G23390.1  CDS  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L36a/L44 (RPL36aA)  note 60S ribosomal protein L36a/L44 (RPL36aA); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, ribosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L44e (InterPro:IPR000552), Ribosomal protein, zinc-binding (InterPro:IPR011332); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L36a/L44 (RPL36aB) (TAIR:AT4G14320.1); Has 750 Blast hits to 748 proteins in 259 species: Archae - 104; Bacteria - 1; Metazoa - 299; Fungi - 120; Plants - 71; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink).  protein_id AT3G23390.1p  transcript_id AT3G23390.1  protein_id AT3G23390.1p  transcript_id AT3G23390.1  
At3g23400	chr3:008377950	0.0	C/8377950-8378225,8377556-8377792,8376941-8377067,8376636-8376850	AT3G23400.1  CDS  go_component nucleus|GO:0005634|14617066|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_process transport|GO:0006810||IEA  go_function structural molecule activity|GO:0005198||IEA  go_function transporter activity|GO:0005215||IEA  go_function binding|GO:0005488||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component plastoglobule|GO:0010287|16461379|IDA  go_function structural molecule activity|GO:0005198||ISS  product plastid-lipid associated protein PAP / fibrillin family protein  note plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity, transporter activity, binding; INVOLVED IN: transport; LOCATED IN: in 8 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lipocalin (InterPro:IPR002345), PAP fibrillin (InterPro:IPR006843); Has 244 Blast hits to 244 proteins in 61 species: Archae - 0; Bacteria - 74; Metazoa - 0; Fungi - 0; Plants - 168; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G23400.1p  transcript_id AT3G23400.1  protein_id AT3G23400.1p  transcript_id AT3G23400.1  
At3g23410	chr3:008382860	0.0	W/8382860-8383069,8383417-8383689,8384267-8386024	AT3G23410.1  CDS  go_component microsome|GO:0005792|15358540|IDA  go_function electron carrier activity|GO:0009055||ISS  go_function long-chain-alcohol oxidase activity|GO:0046577|15358540|IDA  product alcohol oxidase-related  note alcohol oxidase-related; FUNCTIONS IN: electron carrier activity, long-chain-alcohol oxidase activity; LOCATED IN: microsome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Long-chain fatty alcohol dehydrogenase (InterPro:IPR012400); BEST Arabidopsis thaliana protein match is: alcohol oxidase-related (TAIR:AT4G28570.1); Has 2182 Blast hits to 2100 proteins in 448 species: Archae - 25; Bacteria - 1177; Metazoa - 54; Fungi - 156; Plants - 85; Viruses - 0; Other Eukaryotes - 685 (source: NCBI BLink).  protein_id AT3G23410.1p  transcript_id AT3G23410.1  protein_id AT3G23410.1p  transcript_id AT3G23410.1  
At3g23420	chr3:008386782	0.0	C/8386782-8387324,8386346-8386630,8386273-8386302	AT3G23420.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G24580.1); Has 519 Blast hits to 495 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 519; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G23420.1p  transcript_id AT3G23420.1  protein_id AT3G23420.1p  transcript_id AT3G23420.1  
At3g23430	chr3:008392994	0.0	C/8392994-8393242,8391840-8391932,8391219-8391444,8390244-8390592,8390109-8390157,8389940-8390011,8389728-8389857,8389510-8389630,8389152-8389401,8388936-8389040,8388810-8388854,8388573-8388725,8388202-8388480,8387992-8388128,8387818-8387908	AT3G23430.1  CDS  gene_syn PHO1, phosphate 1  gene PHO1  function mutant is deficient in the transfer of phosphate from root epidermal and cortical cells to the xylem. encodes protein with the mainly hydrophilic N-terminal and the C-terminal containing 6 potential membrane-spanning domains.  go_component integral to membrane|GO:0016021||IEA  go_component integral to membrane|GO:0016021||ISS  go_process phosphate transport|GO:0006817||IMP  go_process cellular response to phosphate starvation|GO:0016036|17461783|IEP  product PHO1 (phosphate 1)  note phosphate 1 (PHO1); INVOLVED IN: cellular response to phosphate starvation, phosphate transport; LOCATED IN: integral to membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: EXS, C-terminal (InterPro:IPR004342), SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: EXS family protein / ERD1/XPR1/SYG1 family protein (TAIR:AT1G68740.1); Has 767 Blast hits to 736 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 233; Fungi - 274; Plants - 165; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT3G23430.1p  transcript_id AT3G23430.1  protein_id AT3G23430.1p  transcript_id AT3G23430.1  
At3g23440	chr3:008404358	0.0	C/8404358-8404684	AT3G23440.1  CDS  gene_syn EDA6, EMBRYO SAC DEVELOPMENT ARREST 6, MATERNAL EFFECT EMBRYO ARREST 37, MEE37  gene EDA6  go_component cellular_component|GO:0005575||ND  go_process megagametogenesis|GO:0009561|15634699|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function molecular_function|GO:0003674||ND  product EDA6 (EMBRYO SAC DEVELOPMENT ARREST 6)  note EMBRYO SAC DEVELOPMENT ARREST 6 (EDA6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy, megagametogenesis; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44060.1); Has 34 Blast hits to 34 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G23440.1p  transcript_id AT3G23440.1  protein_id AT3G23440.1p  transcript_id AT3G23440.1  
At3g23450	chr3:008410483	0.0	W/8410483-8411841	AT3G23450.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages.  protein_id AT3G23450.1p  transcript_id AT3G23450.1  protein_id AT3G23450.1p  transcript_id AT3G23450.1  
At3g23460	chr3:008412319	0.0	W/8412319-8412431,8412545-8412644,8412768-8412863,8412945-8412991,8413061-8413184,8413265-8413327,8413416-8413495,8413799-8413879,8413989-8414094,8414212-8414319	AT3G23460.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process lipid biosynthetic process|GO:0008610||IEA  go_function cyclopropane-fatty-acyl-phospholipid synthase activity|GO:0008825||IEA  product cyclopropane fatty acid synthase-related  note cyclopropane fatty acid synthase-related; FUNCTIONS IN: cyclopropane-fatty-acyl-phospholipid synthase activity; INVOLVED IN: lipid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, sepal, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cyclopropane-fatty-acyl-phospholipid synthase (InterPro:IPR003333); BEST Arabidopsis thaliana protein match is: cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative (TAIR:AT3G23510.1); Has 5948 Blast hits to 4401 proteins in 639 species: Archae - 0; Bacteria - 2541; Metazoa - 5; Fungi - 55; Plants - 84; Viruses - 0; Other Eukaryotes - 3263 (source: NCBI BLink).  protein_id AT3G23460.1p  transcript_id AT3G23460.1  protein_id AT3G23460.1p  transcript_id AT3G23460.1  
At3g23470	chr3:008415565	0.0	W/8415565-8415707,8415794-8415896,8415974-8416069,8416152-8416207,8416303-8416426,8416516-8416578,8416679-8416738,8416838-8416999,8417078-8417151,8417229-8417322,8417405-8417541,8417641-8417721,8417819-8417924,8418034-8418120	AT3G23470.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process lipid biosynthetic process|GO:0008610||IEA  go_function cyclopropane-fatty-acyl-phospholipid synthase activity|GO:0008825||IEA  go_process lipid biosynthetic process|GO:0008610||ISS  go_function cyclopropane-fatty-acyl-phospholipid synthase activity|GO:0008825||ISS  product cyclopropane-fatty-acyl-phospholipid synthase  note cyclopropane-fatty-acyl-phospholipid synthase; FUNCTIONS IN: cyclopropane-fatty-acyl-phospholipid synthase activity; INVOLVED IN: lipid biosynthetic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cyclopropane-fatty-acyl-phospholipid synthase (InterPro:IPR003333); BEST Arabidopsis thaliana protein match is: cyclopropane fatty acid synthase-related (TAIR:AT3G23480.1); Has 6742 Blast hits to 6734 proteins in 950 species: Archae - 28; Bacteria - 2782; Metazoa - 17; Fungi - 240; Plants - 103; Viruses - 0; Other Eukaryotes - 3572 (source: NCBI BLink).  protein_id AT3G23470.1p  transcript_id AT3G23470.1  protein_id AT3G23470.1p  transcript_id AT3G23470.1  
At3g23480	chr3:008420284	0.0	W/8420284-8420426,8420496-8420595,8420677-8420772,8420853-8420908,8421001-8421124,8421177-8421239,8421341-8421400,8421496-8421654,8421723-8421796,8421870-8421963,8422040-8422176,8422270-8422350,8422447-8422552,8422646-8422894	AT3G23480.1  CDS  go_process lipid biosynthetic process|GO:0008610||IEA  go_function cyclopropane-fatty-acyl-phospholipid synthase activity|GO:0008825||IEA  go_component cellular_component|GO:0005575||ND  product cyclopropane fatty acid synthase-related  note cyclopropane fatty acid synthase-related; FUNCTIONS IN: cyclopropane-fatty-acyl-phospholipid synthase activity; INVOLVED IN: lipid biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclopropane-fatty-acyl-phospholipid synthase (InterPro:IPR003333); BEST Arabidopsis thaliana protein match is: cyclopropane-fatty-acyl-phospholipid synthase (TAIR:AT3G23470.1); Has 6992 Blast hits to 6984 proteins in 918 species: Archae - 7; Bacteria - 2743; Metazoa - 59; Fungi - 223; Plants - 118; Viruses - 0; Other Eukaryotes - 3842 (source: NCBI BLink).  protein_id AT3G23480.1p  transcript_id AT3G23480.1  protein_id AT3G23480.1p  transcript_id AT3G23480.1  
At3g23490	chr3:008424144	0.0	C/8424144-8424415,8424005-8424076,8423365-8423473,8423238-8423291	AT3G23490.1  CDS  gene_syn CYANASE, CYN  gene CYN  function cyanase  go_process metabolic process|GO:0008152||IEA  go_function DNA binding|GO:0003677||IEA  go_function cyanate hydratase activity|GO:0008824||IEA  go_function hydro-lyase activity|GO:0016836||IEA  go_process cyanate metabolic process|GO:0009439||ISS  go_function cyanate hydratase activity|GO:0008824||ISS  product CYN (CYANASE); DNA binding / cyanate hydratase/ hydro-lyase  note CYANASE (CYN); FUNCTIONS IN: hydro-lyase activity, DNA binding, cyanate hydratase activity; INVOLVED IN: cyanate metabolic process, metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lambda repressor-like, DNA-binding (InterPro:IPR010982), Cyanase (InterPro:IPR008076), Cyanate lyase, C-terminal (InterPro:IPR003712); Has 681 Blast hits to 680 proteins in 266 species: Archae - 3; Bacteria - 542; Metazoa - 7; Fungi - 43; Plants - 28; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT3G23490.1p  transcript_id AT3G23490.1  protein_id AT3G23490.1p  transcript_id AT3G23490.1  
At3g23510	chr3:008428071	0.0	W/8428071-8428247,8429008-8429331,8429424-8429525,8429596-8429655,8429747-8429976,8430056-8430179,8430270-8430450,8430532-8430560,8430657-8430805,8430879-8430981,8431082-8431177,8431278-8431324,8431395-8431518,8431613-8431675,8431770-8431829,8431911-8432072,8432153-8432226,8432312-8432405,8432498-8432634,8432708-8432788,8432873-8432978,8433079-8433159	AT3G23510.1  CDS  gene_syn AT3G23500  go_component endomembrane system|GO:0012505||IEA  go_process lipid biosynthetic process|GO:0008610||IEA  go_function cyclopropane-fatty-acyl-phospholipid synthase activity|GO:0008825||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process lipid biosynthetic process|GO:0008610||ISS  go_function cyclopropane-fatty-acyl-phospholipid synthase activity|GO:0008825||ISS  product cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative  note cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative; FUNCTIONS IN: cyclopropane-fatty-acyl-phospholipid synthase activity, electron carrier activity, oxidoreductase activity; INVOLVED IN: lipid biosynthetic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), Cyclopropane-fatty-acyl-phospholipid synthase (InterPro:IPR003333), Adrenodoxin reductase (InterPro:IPR000759); BEST Arabidopsis thaliana protein match is: cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative (TAIR:AT3G23530.1); Has 11297 Blast hits to 11283 proteins in 1135 species: Archae - 75; Bacteria - 4090; Metazoa - 123; Fungi - 340; Plants - 162; Viruses - 0; Other Eukaryotes - 6507 (source: NCBI BLink).  protein_id AT3G23510.1p  transcript_id AT3G23510.1  protein_id AT3G23510.1p  transcript_id AT3G23510.1  
At3g23530	chr3:008437472	0.0	W/8437472-8437648,8438462-8438785,8438877-8438978,8439060-8439119,8439211-8439440,8439520-8439643,8439735-8439915,8439999-8440027,8440120-8440268,8440342-8440444,8440537-8440632,8440716-8440762,8440837-8440960,8441058-8441120,8441216-8441275,8441354-8441515,8441595-8441668,8441752-8441845,8441939-8442075,8442147-8442227,8442311-8442416,8442517-8442597	AT3G23530.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process lipid biosynthetic process|GO:0008610||IEA  go_function cyclopropane-fatty-acyl-phospholipid synthase activity|GO:0008825||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process lipid biosynthetic process|GO:0008610||ISS  go_function cyclopropane-fatty-acyl-phospholipid synthase activity|GO:0008825||ISS  product cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative  note cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative; FUNCTIONS IN: cyclopropane-fatty-acyl-phospholipid synthase activity, electron carrier activity, oxidoreductase activity; INVOLVED IN: lipid biosynthetic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), Cyclopropane-fatty-acyl-phospholipid synthase (InterPro:IPR003333), Adrenodoxin reductase (InterPro:IPR000759); BEST Arabidopsis thaliana protein match is: cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative (TAIR:AT3G23510.1); Has 11206 Blast hits to 11192 proteins in 1144 species: Archae - 79; Bacteria - 4001; Metazoa - 149; Fungi - 326; Plants - 159; Viruses - 0; Other Eukaryotes - 6492 (source: NCBI BLink).  protein_id AT3G23530.1p  transcript_id AT3G23530.1  protein_id AT3G23530.1p  transcript_id AT3G23530.1  
At3g23540	chr3:008443665	0.0	W/8443665-8443702,8444186-8444267,8444533-8444636,8444790-8444916,8445303-8445397,8445724-8445847,8445933-8446013,8446161-8446259,8446356-8446511,8446596-8446650,8446731-8446801,8447106-8447156,8447385-8447564,8447633-8448070	AT3G23540.1  CDS  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14290.1); Has 2970 Blast hits to 1825 proteins in 452 species: Archae - 14; Bacteria - 815; Metazoa - 445; Fungi - 204; Plants - 77; Viruses - 0; Other Eukaryotes - 1415 (source: NCBI BLink).  protein_id AT3G23540.1p  transcript_id AT3G23540.1  protein_id AT3G23540.1p  transcript_id AT3G23540.1  
At3g23540	chr3:008445381	0.0	W/8445381-8445397,8445724-8445847,8445933-8446013,8446161-8446259,8446356-8446511,8446596-8446650,8446731-8446801,8447106-8447156,8447385-8447564,8447633-8448070	AT3G23540.2  CDS  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14290.1); Has 1827 Blast hits to 682 proteins in 165 species: Archae - 0; Bacteria - 216; Metazoa - 205; Fungi - 177; Plants - 49; Viruses - 0; Other Eukaryotes - 1180 (source: NCBI BLink).  protein_id AT3G23540.2p  transcript_id AT3G23540.2  protein_id AT3G23540.2p  transcript_id AT3G23540.2  
At3g23550	chr3:008450392	0.0	C/8450392-8450649,8449522-8450066,8449300-8449386,8449160-8449216,8448835-8449073,8448637-8448755,8448435-8448539	AT3G23550.1  CDS  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: ALF5 (ABERRANT LATERAL ROOT FORMATION 5); antiporter/ drug transporter/ transporter (TAIR:AT3G23560.1); Has 6114 Blast hits to 6066 proteins in 1104 species: Archae - 128; Bacteria - 3763; Metazoa - 126; Fungi - 208; Plants - 685; Viruses - 0; Other Eukaryotes - 1204 (source: NCBI BLink).  protein_id AT3G23550.1p  transcript_id AT3G23550.1  protein_id AT3G23550.1p  transcript_id AT3G23550.1  
At3g23560	chr3:008456307	0.0	C/8456307-8456588,8455478-8456022,8455232-8455318,8455075-8455131,8454738-8454976,8454545-8454663,8454361-8454465	AT3G23560.1  CDS  gene_syn ABERRANT LATERAL ROOT FORMATION 5, ALF5  gene ALF5  function Member of the multidrug and toxic compound extrusion (MATE) family, protects roots from inhibitory compounds.  go_component membrane|GO:0016020||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_process response to toxin|GO:0009636|11449055|ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product ALF5 (ABERRANT LATERAL ROOT FORMATION 5); antiporter/ drug transporter/ transporter  note ABERRANT LATERAL ROOT FORMATION 5 (ALF5); FUNCTIONS IN: drug transporter activity, antiporter activity, transporter activity; INVOLVED IN: response to toxin; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT3G23550.1); Has 6510 Blast hits to 6474 proteins in 1114 species: Archae - 146; Bacteria - 4026; Metazoa - 125; Fungi - 208; Plants - 696; Viruses - 0; Other Eukaryotes - 1309 (source: NCBI BLink).  protein_id AT3G23560.1p  transcript_id AT3G23560.1  protein_id AT3G23560.1p  transcript_id AT3G23560.1  
At3g23570	chr3:008459461	0.0	C/8459461-8459608,8459346-8459367,8459044-8459170,8458730-8458820,8458518-8458607,8458329-8458429,8458052-8458192	AT3G23570.1  CDS  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process response to salt stress|GO:0009651|11351099|IEP  go_function hydrolase activity|GO:0016787||ISS  product dienelactone hydrolase family protein  note dienelactone hydrolase family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Dienelactone hydrolase (InterPro:IPR002925); BEST Arabidopsis thaliana protein match is: dienelactone hydrolase family protein (TAIR:AT3G23600.1); Has 1112 Blast hits to 1111 proteins in 310 species: Archae - 6; Bacteria - 500; Metazoa - 56; Fungi - 325; Plants - 130; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT3G23570.1p  transcript_id AT3G23570.1  protein_id AT3G23570.1p  transcript_id AT3G23570.1  
At3g23580	chr3:008460261	0.0	W/8460261-8460417,8460735-8460895,8461049-8461097,8461411-8461537,8461651-8461716,8461800-8461916,8462008-8462170,8462260-8462330,8462460-8462574	AT3G23580.1  CDS  gene_syn RIBONUCLEOTIDE REDUCTASE 2A, RNR2, RNR2A  gene RNR2A  function Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes (RNR2A). Functionally redundant with the ribonucleotide reductase TSO2. mRNA was shown to specifically accumulate during the S-phase of the cell cycle in synchronized tobacco BY2 cells. Critical for cell cycle progression, DNA damage repair and plant development.  go_component ribonucleoside-diphosphate reductase complex|GO:0005971|10542051|ISS  go_process DNA repair|GO:0006281|16399800|TAS  go_process multicellular organismal development|GO:0007275|16399800|IMP  go_process deoxyribonucleoside diphosphate metabolic process|GO:0009186||ISS  go_process ribonucleotide metabolic process|GO:0009259|10542051|TAS  go_process regulation of cell cycle|GO:0051726|16399800|IMP  go_function ribonucleoside-diphosphate reductase activity|GO:0004748|10542051|IDA  go_function ribonucleoside-diphosphate reductase activity|GO:0004748|7821432|ISS  go_function ribonucleoside-diphosphate reductase activity|GO:0004748||ISS  product RNR2A (RIBONUCLEOTIDE REDUCTASE 2A); ribonucleoside-diphosphate reductase  note RIBONUCLEOTIDE REDUCTASE 2A (RNR2A); FUNCTIONS IN: ribonucleoside-diphosphate reductase activity; INVOLVED IN: multicellular organismal development, deoxyribonucleoside diphosphate metabolic process, DNA repair, regulation of cell cycle, ribonucleotide metabolic process; LOCATED IN: ribonucleoside-diphosphate reductase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonucleotide reductase-related (InterPro:IPR012348), Ribonucleotide reductase (InterPro:IPR000358), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078); BEST Arabidopsis thaliana protein match is: TSO2 (TSO meaning  ugly  in Chinese); oxidoreductase/ ribonucleoside-diphosphate reductase/ transition metal ion binding (TAIR:AT3G27060.1); Has 7220 Blast hits to 7216 proteins in 1346 species: Archae - 10; Bacteria - 2303; Metazoa - 226; Fungi - 129; Plants - 138; Viruses - 659; Other Eukaryotes - 3755 (source: NCBI BLink).  protein_id AT3G23580.1p  transcript_id AT3G23580.1  protein_id AT3G23580.1p  transcript_id AT3G23580.1  
At3g23590	chr3:008467638	0.0	W/8467638-8467912,8468086-8468196,8468372-8468716,8468882-8469201,8469300-8469391,8469688-8470000,8470148-8470358,8470670-8470784,8470878-8471039,8471127-8471784,8471973-8472179,8472349-8473469	AT3G23590.1  CDS  gene_syn REF4-related 1, RFR1  gene RFR1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product RFR1 (REF4-related 1)  note REF4-related 1 (RFR1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: REF4 (REDUCED EPIDERMAL FLUORESCENCE 4) (TAIR:AT2G48110.1); Has 71 Blast hits to 68 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G23590.1p  transcript_id AT3G23590.1  protein_id AT3G23590.1p  transcript_id AT3G23590.1  
At3g23600	chr3:008473833	0.0	W/8473833-8473980,8474149-8474170,8474520-8474646,8474805-8474895,8474990-8475079,8475340-8475440,8475515-8475655	AT3G23600.1  CDS  go_component plasma membrane|GO:0005886|17644812|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function hydrolase activity|GO:0016787||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_function hydrolase activity|GO:0016787||ISS  product dienelactone hydrolase family protein  note dienelactone hydrolase family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: response to salt stress; LOCATED IN: apoplast, nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Dienelactone hydrolase (InterPro:IPR002925); BEST Arabidopsis thaliana protein match is: dienelactone hydrolase family protein (TAIR:AT3G23570.1); Has 675 Blast hits to 673 proteins in 155 species: Archae - 2; Bacteria - 132; Metazoa - 54; Fungi - 330; Plants - 132; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT3G23600.1p  transcript_id AT3G23600.1  protein_id AT3G23600.1p  transcript_id AT3G23600.1  
At3g23600	chr3:008473833	0.0	W/8473833-8473980,8474149-8474170,8474520-8474646,8474805-8474895,8474999-8475079,8475340-8475440,8475515-8475655	AT3G23600.2  CDS  go_component plasma membrane|GO:0005886|17644812|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function hydrolase activity|GO:0016787||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_function hydrolase activity|GO:0016787||ISS  product dienelactone hydrolase family protein  note dienelactone hydrolase family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: response to salt stress; LOCATED IN: apoplast, nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Dienelactone hydrolase (InterPro:IPR002925); BEST Arabidopsis thaliana protein match is: dienelactone hydrolase family protein (TAIR:AT3G23570.1); Has 578 Blast hits to 576 proteins in 115 species: Archae - 0; Bacteria - 44; Metazoa - 54; Fungi - 330; Plants - 131; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT3G23600.2p  transcript_id AT3G23600.2  protein_id AT3G23600.2p  transcript_id AT3G23600.2  
At3g23605	chr3:008476675	0.0	W/8476675-8477133	AT3G23605.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product UBX domain-containing protein  note UBX domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT4G14250.1); Has 67 Blast hits to 64 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT3G23605.1p  transcript_id AT3G23605.1  protein_id AT3G23605.1p  transcript_id AT3G23605.1  
At3g23610	chr3:008478280	0.0	W/8478280-8478281,8478517-8478682,8478783-8478918,8479022-8479142,8479254-8479399,8479496-8479521	AT3G23610.1  CDS  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_process dephosphorylation|GO:0016311||IEA  go_function protein tyrosine/serine/threonine phosphatase activity|GO:0008138||IEA  go_function phosphatase activity|GO:0016791||IEA  go_function protein tyrosine/serine/threonine phosphatase activity|GO:0008138||ISS  product dual specificity protein phosphatase (DsPTP1)  note dual specificity protein phosphatase (DsPTP1); FUNCTIONS IN: phosphatase activity, protein tyrosine/serine/threonine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation, dephosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase (InterPro:IPR000387), Protein-tyrosine phosphatase, dual specificity (InterPro:IPR000340); BEST Arabidopsis thaliana protein match is: MKP2 (MAPK PHOSPHATASE 2); MAP kinase phosphatase/ protein tyrosine/serine/threonine phosphatase (TAIR:AT3G06110.2); Has 3544 Blast hits to 3539 proteins in 306 species: Archae - 19; Bacteria - 112; Metazoa - 1971; Fungi - 285; Plants - 187; Viruses - 193; Other Eukaryotes - 777 (source: NCBI BLink).  protein_id AT3G23610.1p  transcript_id AT3G23610.1  protein_id AT3G23610.1p  transcript_id AT3G23610.1  
At3g23610	chr3:008478280	0.0	W/8478280-8478281,8478517-8478682,8478783-8478918,8479022-8479142,8479254-8479399,8479607-8479641	AT3G23610.2  CDS  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_process dephosphorylation|GO:0016311||IEA  go_function protein tyrosine/serine/threonine phosphatase activity|GO:0008138||IEA  go_function phosphatase activity|GO:0016791||IEA  go_function protein tyrosine/serine/threonine phosphatase activity|GO:0008138||ISS  product dual specificity protein phosphatase (DsPTP1)  note dual specificity protein phosphatase (DsPTP1); FUNCTIONS IN: phosphatase activity, protein tyrosine/serine/threonine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation, dephosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase (InterPro:IPR000387), Protein-tyrosine phosphatase, dual specificity (InterPro:IPR000340); BEST Arabidopsis thaliana protein match is: MKP2 (MAPK PHOSPHATASE 2); MAP kinase phosphatase/ protein tyrosine/serine/threonine phosphatase (TAIR:AT3G06110.2); Has 482 Blast hits to 481 proteins in 57 species: Archae - 3; Bacteria - 16; Metazoa - 401; Fungi - 27; Plants - 16; Viruses - 7; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT3G23610.2p  transcript_id AT3G23610.2  protein_id AT3G23610.2p  transcript_id AT3G23610.2  
At3g23620	chr3:008480147	0.0	W/8480147-8480215,8480404-8480607,8480914-8481159,8481273-8481515,8481598-8481663,8481757-8481873	AT3G23620.1  CDS  go_component nucleolus|GO:0005730|15496452|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product brix domain-containing protein  note brix domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); Has 321 Blast hits to 314 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 89; Plants - 29; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT3G23620.1p  transcript_id AT3G23620.1  protein_id AT3G23620.1p  transcript_id AT3G23620.1  
At3g23630	chr3:008488878	0.0	W/8488878-8489867	AT3G23630.1  CDS  gene_syn ATIPT7  gene ATIPT7  function Encodes an isopentenyl transferase involved in cytokinin biosynthesis.  go_function tRNA isopentenyltransferase activity|GO:0004811||IEA  go_function ATP binding|GO:0005524||IEA  go_process cytokinin biosynthetic process|GO:0009691|16139212|TAS  go_process cytokinin biosynthetic process|GO:0009691|17062755|IGI  go_function transferase activity, transferring alkyl or aryl (other than methyl) groups|GO:0016765||ISS  product ATIPT7; ATP binding / tRNA isopentenyltransferase/ transferase, transferring alkyl or aryl (other than methyl) groups  note ATIPT7; FUNCTIONS IN: transferase activity, transferring alkyl or aryl (other than methyl) groups, tRNA isopentenyltransferase activity, ATP binding; INVOLVED IN: cytokinin biosynthetic process; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: tRNA isopentenyltransferase (InterPro:IPR002627); BEST Arabidopsis thaliana protein match is: IPT5; ATP binding / tRNA isopentenyltransferase/ transferase, transferring alkyl or aryl (other than methyl) groups (TAIR:AT5G19040.1); Has 5383 Blast hits to 5045 proteins in 1438 species: Archae - 0; Bacteria - 2856; Metazoa - 161; Fungi - 121; Plants - 185; Viruses - 0; Other Eukaryotes - 2060 (source: NCBI BLink).  protein_id AT3G23630.1p  transcript_id AT3G23630.1  protein_id AT3G23630.1p  transcript_id AT3G23630.1  
At3g23633	chr3:008496690	0.0	C/8496690-8497163	AT3G23633.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated (InterPro:IPR006527); BEST Arabidopsis thaliana protein match is: F-box family protein (FBX9) (TAIR:AT2G04920.1); Has 396 Blast hits to 387 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G23633.1p  transcript_id AT3G23633.1  protein_id AT3G23633.1p  transcript_id AT3G23633.1  
At3g23633	chr3:008497001	0.0	C/8497001-8497163,8496690-8496859	AT3G23633.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated (InterPro:IPR006527); BEST Arabidopsis thaliana protein match is: F-box family protein (FBX9) (TAIR:AT2G04920.1).  protein_id AT3G23633.2p  transcript_id AT3G23633.2  protein_id AT3G23633.2p  transcript_id AT3G23633.2  
At3g23635	chr3:008497941	0.0	C/8497941-8498072	AT3G23635.1  CDS  gene_syn ROTUNDIFOLIA LIKE 13, RTFL13  gene RTFL13  go_component mitochondrion|GO:0005739||IEA  product RTFL13 (ROTUNDIFOLIA LIKE 13)  note ROTUNDIFOLIA LIKE 13 (RTFL13); LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G23635.1p  transcript_id AT3G23635.1  protein_id AT3G23635.1p  transcript_id AT3G23635.1  
At3g23637	chr3:008499727	0.0	C/8499727-8499888	AT3G23637.1  CDS  gene_syn DEVIL 21, DVL21  gene DVL21  function Member of a family of small polypeptides found only in angiosperm lineages.Contains a conserved 29 amino acid domain (RTF or DVL domain).  go_component cellular_component|GO:0005575||ND  go_process shoot development|GO:0048367|14871303|ISS  go_function molecular_function|GO:0003674||ND  product DVL21 (DEVIL 21)  note DEVIL 21 (DVL21); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: shoot development; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G23637.1p  transcript_id AT3G23637.1  protein_id AT3G23637.1p  transcript_id AT3G23637.1  
At3g23640	chr3:008502355	0.0	W/8502355-8502597,8502669-8502737,8502807-8502944,8503043-8503160,8503324-8503406,8503538-8503633,8503757-8503925,8504021-8504163,8504256-8504342,8504670-8504855,8505224-8505391,8505616-8505736,8505826-8505895,8506262-8506349,8506457-8506577,8506918-8507111,8507190-8507298,8507572-8507727,8508018-8508120,8508249-8508422,8508775-8508920,8509165-8509358	AT3G23640.1  CDS  gene_syn HGL1, heteroglycan glucosidase 1  gene HGL1  go_component chloroplast|GO:0009507|18431481|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product HGL1 (heteroglycan glucosidase 1); hydrolase, hydrolyzing O-glycosyl compounds  note heteroglycan glucosidase 1 (HGL1); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 31 (InterPro:IPR000322), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: RSW3 (RADIAL SWELLING 3); glucosidase/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT5G63840.1); Has 3075 Blast hits to 2833 proteins in 598 species: Archae - 51; Bacteria - 1416; Metazoa - 647; Fungi - 541; Plants - 148; Viruses - 0; Other Eukaryotes - 272 (source: NCBI BLink).  protein_id AT3G23640.1p  transcript_id AT3G23640.1  protein_id AT3G23640.1p  transcript_id AT3G23640.1  
At3g23640	chr3:008502355	0.0	W/8502355-8502597,8502669-8502737,8502807-8502944,8503043-8503160,8503324-8503406,8503538-8503633,8503757-8503925,8504021-8504163,8504256-8504342,8504670-8504855,8505224-8505391,8505616-8505736,8505826-8505895,8506262-8506349,8506457-8506577,8506918-8507111,8507190-8507298,8507572-8507727,8508018-8508120,8508249-8508422,8508775-8508920,8509165-8509358	AT3G23640.2  CDS  gene_syn HGL1, heteroglycan glucosidase 1  gene HGL1  go_component chloroplast|GO:0009507|18431481|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product HGL1 (heteroglycan glucosidase 1); hydrolase, hydrolyzing O-glycosyl compounds  note heteroglycan glucosidase 1 (HGL1); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 31 (InterPro:IPR000322), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: RSW3 (RADIAL SWELLING 3); glucosidase/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT5G63840.1); Has 3075 Blast hits to 2833 proteins in 598 species: Archae - 51; Bacteria - 1416; Metazoa - 647; Fungi - 541; Plants - 148; Viruses - 0; Other Eukaryotes - 272 (source: NCBI BLink).  protein_id AT3G23640.2p  transcript_id AT3G23640.2  protein_id AT3G23640.2p  transcript_id AT3G23640.2  
At3g23645	chr3:008509762	0.0	C/8509762-8510165	AT3G23645.1  pseudogenic_transcript  pseudo  function Encodes a Protease inhibitor/seed storage/LTP family protein [pseudogene]  
At3g23650	chr3:008511076	0.0	C/8511076-8511196,8510689-8510972	AT3G23650.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product protein kinase-related  note protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: protein kinase-related (TAIR:AT2G16620.1); Has 202 Blast hits to 202 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 202; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G23650.1p  transcript_id AT3G23650.1  protein_id AT3G23650.1p  transcript_id AT3G23650.1  
At3g23660	chr3:008516995	0.0	C/8516995-8517729,8516737-8516910,8516491-8516652,8515874-8516016,8515626-8515701,8515344-8515513,8515132-8515213,8514941-8515018,8514463-8514624,8514106-8514369,8513900-8514004,8513666-8513812	AT3G23660.1  CDS  go_component COPII vesicle coat|GO:0030127||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process ER to Golgi vesicle-mediated transport|GO:0006888||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product transport protein, putative  note transport protein, putative; FUNCTIONS IN: protein binding, transporter activity, zinc ion binding; INVOLVED IN: intracellular protein transport, transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24 helical region (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24 trunk region (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin region (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: transport protein, putative (TAIR:AT4G14160.2); Has 1026 Blast hits to 1015 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 445; Fungi - 277; Plants - 137; Viruses - 0; Other Eukaryotes - 167 (source: NCBI BLink).  protein_id AT3G23660.1p  transcript_id AT3G23660.1  protein_id AT3G23660.1p  transcript_id AT3G23660.1  
At3g23670	chr3:008519290	0.0	W/8519290-8519583,8519820-8519954,8520053-8520136,8520222-8520347,8520433-8520492,8520590-8520643,8520732-8520824,8521130-8521225,8521379-8521524,8521706-8521855,8521944-8522073,8522147-8522719,8523996-8524664,8524750-8525055	AT3G23670.2  CDS  gene_syn KINESIN-12B, PAKRP1L  gene KINESIN-12B  function Microtubule motor kinesin PAKRP1L/Kinesin-12B. Together with PAKRP1/Kinesin-12A, serve as linkers of the plus ends of antiparallel microtubules in the phragmoplast.  go_component microtubule associated complex|GO:0005875||IEA  go_component chloroplast|GO:0009507||IEA  go_process phragmoplast formation|GO:0000914|17720869|IGI  go_process microgametogenesis|GO:0055046|17720869|IMP  go_function microtubule motor activity|GO:0003777||ISS  go_function plus-end-directed microtubule motor activity|GO:0008574|17720869|IGI  product KINESIN-12B; microtubule motor/ plus-end-directed microtubule motor  note KINESIN-12B; FUNCTIONS IN: plus-end-directed microtubule motor activity, microtubule motor activity; INVOLVED IN: phragmoplast formation, microgametogenesis; LOCATED IN: microtubule associated complex, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin-related (InterPro:IPR010544), Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: PAKRP1 (PHRAGMOPLAST-ASSOCIATED KINESIN-RELATED PROTEIN 1); microtubule motor/ plus-end-directed microtubule motor (TAIR:AT4G14150.1); Has 12113 Blast hits to 10633 proteins in 420 species: Archae - 26; Bacteria - 215; Metazoa - 6652; Fungi - 1201; Plants - 1016; Viruses - 9; Other Eukaryotes - 2994 (source: NCBI BLink).  protein_id AT3G23670.2p  transcript_id AT3G23670.2  protein_id AT3G23670.2p  transcript_id AT3G23670.2  
At3g23670	chr3:008519290	0.0	W/8519290-8519583,8519820-8519954,8520053-8520136,8520222-8520347,8520433-8520492,8520590-8520643,8520732-8520824,8521130-8521225,8521379-8521524,8521706-8521855,8521944-8522073,8522147-8523358,8523443-8523541,8523632-8523784,8523861-8524664,8524750-8525055	AT3G23670.1  CDS  gene_syn KINESIN-12B, PAKRP1L  gene KINESIN-12B  function Microtubule motor kinesin PAKRP1L/Kinesin-12B. Together with PAKRP1/Kinesin-12A, serve as linkers of the plus ends of antiparallel microtubules in the phragmoplast.  go_component microtubule associated complex|GO:0005875||IEA  go_component chloroplast|GO:0009507||IEA  go_process phragmoplast formation|GO:0000914|17720869|IGI  go_process microgametogenesis|GO:0055046|17720869|IMP  go_function microtubule motor activity|GO:0003777||ISS  go_function plus-end-directed microtubule motor activity|GO:0008574|17720869|IGI  product KINESIN-12B; microtubule motor/ plus-end-directed microtubule motor  note KINESIN-12B; FUNCTIONS IN: plus-end-directed microtubule motor activity, microtubule motor activity; INVOLVED IN: phragmoplast formation, microgametogenesis; LOCATED IN: microtubule associated complex, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin-related (InterPro:IPR010544), Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: PAKRP1 (PHRAGMOPLAST-ASSOCIATED KINESIN-RELATED PROTEIN 1); microtubule motor/ plus-end-directed microtubule motor (TAIR:AT4G14150.1); Has 17387 Blast hits to 13709 proteins in 547 species: Archae - 71; Bacteria - 513; Metazoa - 10126; Fungi - 1605; Plants - 1149; Viruses - 19; Other Eukaryotes - 3904 (source: NCBI BLink).  protein_id AT3G23670.1p  transcript_id AT3G23670.1  protein_id AT3G23670.1p  transcript_id AT3G23670.1  
At3g23680	chr3:008527061	0.0	C/8527061-8527173,8526366-8526960	AT3G23680.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G23685.1); Has 353 Blast hits to 341 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 353; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G23680.1p  transcript_id AT3G23680.1  protein_id AT3G23680.1p  transcript_id AT3G23680.1  
At3g23685	chr3:008527239	0.0	W/8527239-8527982,8528069-8528317	AT3G23685.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein-related (TAIR:AT3G25090.1); Has 442 Blast hits to 428 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 442; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G23685.1p  transcript_id AT3G23685.1  protein_id AT3G23685.1p  transcript_id AT3G23685.1  
At3g23690	chr3:008530236	0.0	C/8530236-8530655,8529870-8530070,8529635-8529769,8529480-8529551,8529244-8529396,8529056-8529152,8528933-8528970	AT3G23690.1  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT5G48560.1); Has 1379 Blast hits to 1376 proteins in 117 species: Archae - 0; Bacteria - 4; Metazoa - 36; Fungi - 59; Plants - 1270; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT3G23690.1p  transcript_id AT3G23690.1  protein_id AT3G23690.1p  transcript_id AT3G23690.1  
At3g23700	chr3:008533307	0.0	C/8533307-8533742,8533148-8533209,8532916-8533075,8532704-8532824,8532541-8532622,8532357-8532460,8531991-8532069,8531856-8531906,8531689-8531772	AT3G23700.1  CDS  go_component nucleus|GO:0005634|14617066|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_function RNA binding|GO:0003723||IEA  go_process response to cold|GO:0009409|14617066|IEP  go_function RNA binding|GO:0003723||ISS  product S1 RNA-binding domain-containing protein  note S1 RNA-binding domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: response to cold; LOCATED IN: chloroplast stroma, nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), S1, RNA binding (InterPro:IPR003029); BEST Arabidopsis thaliana protein match is: RPS1 (RIBOSOMAL PROTEIN S1); RNA binding / structural constituent of ribosome (TAIR:AT5G30510.1); Has 19049 Blast hits to 12627 proteins in 1560 species: Archae - 136; Bacteria - 11493; Metazoa - 155; Fungi - 150; Plants - 198; Viruses - 0; Other Eukaryotes - 6917 (source: NCBI BLink).  protein_id AT3G23700.1p  transcript_id AT3G23700.1  protein_id AT3G23700.1p  transcript_id AT3G23700.1  
At3g23710	chr3:008534061	0.0	W/8534061-8534612,8534700-8534774,8535372-8535428,8535626-8535685,8535774-8535854,8535946-8535981,8536068-8536148	AT3G23710.1  CDS  go_component chloroplast|GO:0009507||IEA  go_component chloroplast inner membrane|GO:0009706||ISS  product chloroplast inner membrane import protein Tic22, putative  note chloroplast inner membrane import protein Tic22, putative; LOCATED IN: chloroplast, chloroplast inner membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tic22-like (InterPro:IPR007378); BEST Arabidopsis thaliana protein match is: chloroplast inner membrane import protein Tic22, putative (TAIR:AT4G33350.1); Has 72 Blast hits to 72 proteins in 30 species: Archae - 0; Bacteria - 32; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT3G23710.1p  transcript_id AT3G23710.1  protein_id AT3G23710.1p  transcript_id AT3G23710.1  
At3g23715	chr3:008536850	0.0	W/8536850-8536916,8537053-8537273	AT3G23715.1  CDS  gene_syn SCR-Like 13, SCRL13  gene SCRL13  function Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).  go_component endomembrane system|GO:0012505||IEA  product SCRL13 (SCR-Like 13)  note SCR-Like 13 (SCRL13); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: SCRL12 (SCR-Like 12) (TAIR:AT3G23727.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G23715.1p  transcript_id AT3G23715.1  protein_id AT3G23715.1p  transcript_id AT3G23715.1  
At3g23720	chr3:008537365	0.0	W/8537365-8537610	AT3G23720.1  mRNA_TE_gene  pseudo  note Transposable element gene  
At3g23725	chr3:008538452	0.0	W/8538452-8542993	AT3G23725.1  mRNA_TE_gene  pseudo  gene_syn MYM9.6  note Transposable element gene, gypsy-like retrotransposon family, has a 1.2e-164 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus)  
At3g23727	chr3:008544863	0.0	W/8544863-8544929,8545144-8545355	AT3G23727.1  CDS  gene_syn SCR-Like 12, SCRL12  gene SCRL12  function Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).  go_component endomembrane system|GO:0012505||IEA  product SCRL12 (SCR-Like 12)  note SCR-Like 12 (SCRL12); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: SCRL13 (SCR-Like 13) (TAIR:AT3G23715.1); Has 11 Blast hits to 11 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G23727.1p  transcript_id AT3G23727.1  protein_id AT3G23727.1p  transcript_id AT3G23727.1  
At3g23730	chr3:008550222	0.0	W/8550222-8550494,8550574-8550767,8550840-8551248	AT3G23730.1  CDS  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process cellular glucan metabolic process|GO:0006073||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762||IEA  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative  note xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16, active site (InterPro:IPR008263), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7); hydrolase, acting on glycosyl bonds / hydrolase, hydrolyzing O-glycosyl compounds / xyloglucan:xyloglucosyl transferase (TAIR:AT4G14130.1); Has 1381 Blast hits to 1373 proteins in 213 species: Archae - 0; Bacteria - 185; Metazoa - 0; Fungi - 277; Plants - 811; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT3G23730.1p  transcript_id AT3G23730.1  protein_id AT3G23730.1p  transcript_id AT3G23730.1  
At3g23740	chr3:008554466	0.0	C/8554466-8554730,8554150-8554259,8553978-8554071,8553738-8553904,8553491-8553584,8552607-8553307,8552284-8552382,8552077-8552175	AT3G23740.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: F mature embryo stage, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14120.1); Has 121 Blast hits to 102 proteins in 38 species: Archae - 0; Bacteria - 13; Metazoa - 17; Fungi - 39; Plants - 27; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT3G23740.1p  transcript_id AT3G23740.1  protein_id AT3G23740.1p  transcript_id AT3G23740.1  
At3g23750	chr3:008558332	0.0	W/8558332-8560597,8560743-8561263	AT3G23750.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_function protein kinase activity|GO:0004672||ISS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein / protein kinase family protein  note leucine-rich repeat family protein / protein kinase family protein; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: TMK1 (TRANSMEMBRANE KINASE 1); transmembrane receptor protein serine/threonine kinase (TAIR:AT1G66150.1); Has 123032 Blast hits to 100120 proteins in 3534 species: Archae - 85; Bacteria - 9593; Metazoa - 49390; Fungi - 7521; Plants - 38429; Viruses - 417; Other Eukaryotes - 17597 (source: NCBI BLink).  protein_id AT3G23750.1p  transcript_id AT3G23750.1  protein_id AT3G23750.1p  transcript_id AT3G23750.1  
At3g23760	chr3:008564320	0.0	C/8564320-8564640,8563162-8563318,8562965-8563071	AT3G23760.1  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: transferase, transferring glycosyl groups (TAIR:AT4G14100.1); Has 63 Blast hits to 60 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G23760.1p  transcript_id AT3G23760.1  protein_id AT3G23760.1p  transcript_id AT3G23760.1  
At3g23770	chr3:008565556	0.0	W/8565556-8565601,8565680-8567026,8567159-8567196	AT3G23770.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: MEE48 (maternal effect embryo arrest 48); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT4G14080.1); Has 1757 Blast hits to 1704 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 21; Plants - 1732; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G23770.1p  transcript_id AT3G23770.1  protein_id AT3G23770.1p  transcript_id AT3G23770.1  
At3g23780	chr3:008573403	0.0	C/8573403-8573819,8572455-8572682,8571123-8572003,8570452-8570743,8569427-8570320,8569025-8569329,8567971-8568472	AT3G23780.1  CDS  gene_syn DEFECTIVE IN MERISTEM SILENCING 2, DMS2, DRD2, NRPD2, NRPD2A, NRPE2  gene NRPD2A  function This gene encodes the second largest, catalytic subunit of the nuclear DNA-dependent RNA polymerase IV (aka RNA polymerase D). The NRPD2 protein is found at nuclear foci that overlap or are adjacent to chromocentromeres but are not fully coincident with chromocentromeres. The loss of NRPD2 leads to the loss of cytosine methylation at pericentromeric 5S genes and AtSN1 retroelements but has no discernible effect on centromere repeat methylation. This suggests that Pol IV primarily affects facultative heterochromatin rather than constitutive heterochromatin.  go_component DNA-directed RNA polymerase IV complex|GO:0000418|15766525|IPI  go_component DNA-directed RNA polymerase IV complex|GO:0000418|19110459|IPI  go_component nucleus|GO:0005634|16140984|IDA  go_component nuclear heterochromatin|GO:0005720|15766525|IDA  go_component RNA polymerase complex|GO:0030880|16140984|IPI  go_component DNA-directed RNA polymerase V complex|GO:0080137|19110459|IPI  go_process DNA methylation|GO:0006306|15766525|IDA  go_process DNA methylation|GO:0006306|18425128|IMP  go_process transcription|GO:0006350||ISS  go_process RNA interference, production of siRNA|GO:0030422|15766525|IMP  go_process gene silencing by RNA|GO:0031047|15692015|IMP  go_process posttranscriptional gene silencing by RNA|GO:0035194|16140984|IMP  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899|15766525|ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product NRPD2A; DNA binding / DNA-directed RNA polymerase  note NRPD2A; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: posttranscriptional gene silencing by RNA, RNA interference, production of siRNA, DNA methylation, transcription, gene silencing by RNA; LOCATED IN: DNA-directed RNA polymerase V complex, nuclear heterochromatin, RNA polymerase complex, nucleus, DNA-directed RNA polymerase IV complex; EXPRESSED IN: flower, root; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, subunit 2, domain 6 (InterPro:IPR007120), RNA polymerase Rpb2, domain 7 (InterPro:IPR007641), RNA polymerase, beta subunit, protrusion (InterPro:IPR007644), RNA polymerase Rpb2, domain 3 (InterPro:IPR007645), DNA-directed RNA polymerase, subunit 2 (InterPro:IPR015712), RNA polymerase Rpb2, domain 2 (InterPro:IPR007642), RNA polymerase Rpb2, domain 4 (InterPro:IPR007646), RNA polymerase, beta subunit, conserved site (InterPro:IPR007121), RNA polymerase Rpb2, domain 5 (InterPro:IPR007647); BEST Arabidopsis thaliana protein match is: NRPD2b; DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding (TAIR:AT3G18090.1); Has 24407 Blast hits to 19803 proteins in 5988 species: Archae - 271; Bacteria - 9406; Metazoa - 383; Fungi - 4889; Plants - 1849; Viruses - 205; Other Eukaryotes - 7404 (source: NCBI BLink).  protein_id AT3G23780.1p  transcript_id AT3G23780.1  protein_id AT3G23780.1p  transcript_id AT3G23780.1  
At3g23790	chr3:008575268	0.0	W/8575268-8575420,8575733-8575924,8576372-8576486,8577083-8577170,8577623-8577831,8577903-8578018,8578136-8578285,8578439-8578506,8578651-8578756,8578887-8579045,8579154-8579207,8579311-8579391,8579494-8579631,8579953-8580112,8580342-8580421,8580518-8580666,8580759-8580816,8580909-8581001	AT3G23790.1  CDS  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  product AMP-binding protein, putative  note AMP-binding protein, putative; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AAE15 (acyl-activating enzyme 15); long-chain-fatty-acid-[acyl-carrier-protein] ligase (TAIR:AT4G14070.1); Has 45635 Blast hits to 35589 proteins in 2065 species: Archae - 547; Bacteria - 27563; Metazoa - 2357; Fungi - 1749; Plants - 1465; Viruses - 1; Other Eukaryotes - 11953 (source: NCBI BLink).  protein_id AT3G23790.1p  transcript_id AT3G23790.1  protein_id AT3G23790.1p  transcript_id AT3G23790.1  
At3g23800	chr3:008581701	0.0	W/8581701-8581824,8581945-8582140,8582227-8582454,8582570-8582801,8582881-8582988,8583073-8583345,8583423-8583704	AT3G23800.1  CDS  gene_syn SBP3, selenium-binding protein 3  gene SBP3  go_function selenium binding|GO:0008430||IEA  go_component cellular_component|GO:0005575||ND  go_function selenium binding|GO:0008430||ISS  product SBP3 (selenium-binding protein 3); selenium binding  note selenium-binding protein 3 (SBP3); FUNCTIONS IN: selenium binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), Selenium-binding protein (InterPro:IPR008826); BEST Arabidopsis thaliana protein match is: SBP1 (selenium-binding protein 1); selenium binding (TAIR:AT4G14030.1); Has 765 Blast hits to 758 proteins in 153 species: Archae - 15; Bacteria - 126; Metazoa - 187; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 382 (source: NCBI BLink).  protein_id AT3G23800.1p  transcript_id AT3G23800.1  protein_id AT3G23800.1p  transcript_id AT3G23800.1  
At3g23805	chr3:008586467	0.0	W/8586467-8586823	AT3G23805.1  CDS  gene_syn RALFL24, ralf-like 24  gene RALFL24  function Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  go_component apoplast|GO:0048046|12611624|ISS  go_process cell-cell signaling|GO:0007267|12611624|ISS  go_function signal transducer activity|GO:0004871|12611624|TAS  product RALFL24 (ralf-like 24); signal transducer  note ralf-like 24 (RALFL24); FUNCTIONS IN: signal transducer activity; INVOLVED IN: cell-cell signaling; LOCATED IN: apoplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALFL31 (ralf-like 31); signal transducer (TAIR:AT4G13950.1); Has 148 Blast hits to 148 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 146; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G23805.1p  transcript_id AT3G23805.1  protein_id AT3G23805.1p  transcript_id AT3G23805.1  
At3g23810	chr3:008588961	0.0	C/8588961-8589671,8588013-8588759	AT3G23810.1  CDS  gene_syn ATSAHH2, S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2, SAHH2  gene SAHH2  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process one-carbon compound metabolic process|GO:0006730||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function adenosylhomocysteinase activity|GO:0004013||IEA  go_function binding|GO:0005488||IEA  go_process one-carbon compound metabolic process|GO:0006730||ISS  go_function adenosylhomocysteinase activity|GO:0004013||ISS  product SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2); adenosylhomocysteinase/ binding / catalytic  note S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2 (SAHH2); FUNCTIONS IN: adenosylhomocysteinase activity, binding, catalytic activity; INVOLVED IN: one-carbon compound metabolic process, metabolic process; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosyl-L-homocysteine hydrolase (InterPro:IPR000043), NAD(P)-binding (InterPro:IPR016040), S-adenosyl-L-homocysteine hydrolase, NAD binding (InterPro:IPR015878); BEST Arabidopsis thaliana protein match is: MEE58 (MATERNAL EFFECT EMBRYO ARREST 58); adenosylhomocysteinase/ copper ion binding (TAIR:AT4G13940.1); Has 6533 Blast hits to 6529 proteins in 950 species: Archae - 144; Bacteria - 1368; Metazoa - 431; Fungi - 95; Plants - 164; Viruses - 0; Other Eukaryotes - 4331 (source: NCBI BLink).  protein_id AT3G23810.1p  transcript_id AT3G23810.1  protein_id AT3G23810.1p  transcript_id AT3G23810.1  
At3g23820	chr3:008603645	0.0	W/8603645-8605027	AT3G23820.1  CDS  gene_syn GAE6, UDP-D-GLUCURONATE 4-EPIMERASE 6  gene GAE6  function UDP-D-glucuronate 4-epimerase  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_component cellular_component|GO:0005575||ND  go_process nucleotide-sugar metabolic process|GO:0009225||ISS  go_function catalytic activity|GO:0003824||ISS  go_function UDP-glucuronate 4-epimerase activity|GO:0050378|15247385|ISS  product GAE6 (UDP-D-GLUCURONATE 4-EPIMERASE 6); UDP-glucuronate 4-epimerase/ catalytic  note UDP-D-GLUCURONATE 4-EPIMERASE 6 (GAE6); FUNCTIONS IN: UDP-glucuronate 4-epimerase activity, catalytic activity; INVOLVED IN: cellular metabolic process, carbohydrate metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: GAE2 (UDP-D-GLUCURONATE 4-EPIMERASE 2); UDP-glucuronate 4-epimerase/ catalytic (TAIR:AT1G02000.1); Has 28168 Blast hits to 28166 proteins in 1685 species: Archae - 464; Bacteria - 13307; Metazoa - 638; Fungi - 276; Plants - 650; Viruses - 29; Other Eukaryotes - 12804 (source: NCBI BLink).  protein_id AT3G23820.1p  transcript_id AT3G23820.1  protein_id AT3G23820.1p  transcript_id AT3G23820.1  
At3g23830	chr3:008607557	0.0	C/8607557-8607677,8607399-8607467,8607092-8607198,8606762-8606875	AT3G23830.1  CDS  gene_syn GLYCINE-RICH RNA-BINDING PROTEIN 4, GR-RBP4, GRP4  gene GRP4  function encodes a glycine-rich RNA binding protein. Gene expression is induced by cold and reduced by ionic (salt) and non-ionic (mannitol) osmotic stress. Lines overexpressing the gene are slightly more tolerant to osmotic stress during germination.  go_process response to osmotic stress|GO:0006970|16207746|IEP  go_process response to osmotic stress|GO:0006970|16207746|IMP  go_process response to cold|GO:0009409|16207746|IEP  go_process response to salt stress|GO:0009651|16207746|IEP  go_process response to salt stress|GO:0009651|16207746|IMP  go_function double-stranded DNA binding|GO:0003690|16207746|IDA  go_function single-stranded DNA binding|GO:0003697|16207746|IDA  go_function RNA binding|GO:0003723|16207746|IDA  go_function RNA binding|GO:0003723||ISS  product GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4); RNA binding / double-stranded DNA binding / single-stranded DNA binding  note GLYCINE-RICH RNA-BINDING PROTEIN 4 (GRP4); FUNCTIONS IN: double-stranded DNA binding, single-stranded DNA binding, RNA binding; INVOLVED IN: response to salt stress, response to cold, response to osmotic stress; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2); ATP binding / RNA binding / double-stranded DNA binding / single-stranded DNA binding (TAIR:AT4G13850.3); Has 24029 Blast hits to 17847 proteins in 644 species: Archae - 8; Bacteria - 1161; Metazoa - 14013; Fungi - 2798; Plants - 3527; Viruses - 0; Other Eukaryotes - 2522 (source: NCBI BLink).  protein_id AT3G23830.1p  transcript_id AT3G23830.1  protein_id AT3G23830.1p  transcript_id AT3G23830.1  
At3g23830	chr3:008607557	0.0	C/8607557-8607677,8607399-8607467,8607092-8607198,8606762-8606875	AT3G23830.2  CDS  gene_syn GLYCINE-RICH RNA-BINDING PROTEIN 4, GR-RBP4, GRP4  gene GRP4  function encodes a glycine-rich RNA binding protein. Gene expression is induced by cold and reduced by ionic (salt) and non-ionic (mannitol) osmotic stress. Lines overexpressing the gene are slightly more tolerant to osmotic stress during germination.  go_process response to osmotic stress|GO:0006970|16207746|IEP  go_process response to osmotic stress|GO:0006970|16207746|IMP  go_process response to cold|GO:0009409|16207746|IEP  go_process response to salt stress|GO:0009651|16207746|IEP  go_process response to salt stress|GO:0009651|16207746|IMP  go_function double-stranded DNA binding|GO:0003690|16207746|IDA  go_function single-stranded DNA binding|GO:0003697|16207746|IDA  go_function RNA binding|GO:0003723|16207746|IDA  go_function RNA binding|GO:0003723||ISS  product GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4); RNA binding / double-stranded DNA binding / single-stranded DNA binding  note GLYCINE-RICH RNA-BINDING PROTEIN 4 (GRP4); FUNCTIONS IN: double-stranded DNA binding, single-stranded DNA binding, RNA binding; INVOLVED IN: response to salt stress, response to cold, response to osmotic stress; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2); ATP binding / RNA binding / double-stranded DNA binding / single-stranded DNA binding (TAIR:AT4G13850.3); Has 24029 Blast hits to 17847 proteins in 644 species: Archae - 8; Bacteria - 1161; Metazoa - 14013; Fungi - 2798; Plants - 3527; Viruses - 0; Other Eukaryotes - 2522 (source: NCBI BLink).  protein_id AT3G23830.2p  transcript_id AT3G23830.2  protein_id AT3G23830.2p  transcript_id AT3G23830.2  
At3g23840	chr3:008611177	0.0	W/8611177-8611611,8611732-8612559	AT3G23840.1  CDS  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT4G13840.1); Has 770 Blast hits to 770 proteins in 68 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 3; Plants - 765; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G23840.1p  transcript_id AT3G23840.1  protein_id AT3G23840.1p  transcript_id AT3G23840.1  
At3g23850	chr3:008615564	0.0	W/8615564-8615608,8615721-8615771,8616256-8616336,8616486-8616533	AT3G23850.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G23850.1p  transcript_id AT3G23850.1  protein_id AT3G23850.1p  transcript_id AT3G23850.1  
At3g23860	chr3:008616953	0.0	C/8616953-8617645	AT3G23860.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product GTP-binding protein-related  note GTP-binding protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: GTP-binding protein-related (TAIR:AT1G50920.1); Has 270 Blast hits to 270 proteins in 141 species: Archae - 2; Bacteria - 0; Metazoa - 107; Fungi - 80; Plants - 24; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT3G23860.1p  transcript_id AT3G23860.1  protein_id AT3G23860.1p  transcript_id AT3G23860.1  
At3g23870	chr3:008620253	0.0	W/8620253-8620439,8620514-8620604,8620695-8620855,8620944-8621071,8621153-8621290,8621368-8621460,8621546-8621755	AT3G23870.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product permease-related  note permease-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF803 (InterPro:IPR008521); BEST Arabidopsis thaliana protein match is: permease-related (TAIR:AT4G13800.1); Has 959 Blast hits to 946 proteins in 156 species: Archae - 0; Bacteria - 76; Metazoa - 363; Fungi - 237; Plants - 147; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).  protein_id AT3G23870.1p  transcript_id AT3G23870.1  protein_id AT3G23870.1p  transcript_id AT3G23870.1  
At3g23880	chr3:008622061	0.0	C/8622061-8623155	AT3G23880.1  CDS  go_component nucleus|GO:0005634|14617066|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G06240.1); Has 1320 Blast hits to 1317 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1318; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G23880.1p  transcript_id AT3G23880.1  protein_id AT3G23880.1p  transcript_id AT3G23880.1  
At3g23890	chr3:008624931	0.0	W/8624931-8625506,8625682-8625977,8626064-8626130,8626213-8626483,8626578-8626774,8626850-8627059,8627152-8627265,8627362-8627475,8627570-8627734,8627818-8628159,8628232-8628365,8628440-8628788,8628869-8629055,8629139-8629188,8629276-8629716,8629808-8629994,8630083-8630187,8630276-8630349,8630455-8630536,8630646-8631106	AT3G23890.1  CDS  gene_syn ATTOPII, TOPII, TOPOISOMERASE II  gene TOPII  function Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in proliferative tissues.  go_component nucleus|GO:0005634|7838729|IDA  go_component DNA topoisomerase complex (ATP-hydrolyzing)|GO:0009330||ISS  go_process DNA metabolic process|GO:0006259||ISS  go_process DNA topological change|GO:0006265||ISS  go_process chromosome segregation|GO:0007059||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA topoisomerase activity|GO:0003916|14558665|ISS  go_function DNA topoisomerase (ATP-hydrolyzing) activity|GO:0003918||ISS  go_function ATP binding|GO:0005524||ISS  go_function DNA-dependent ATPase activity|GO:0008094||ISS  product TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/ DNA-dependent ATPase  note TOPOISOMERASE II (TOPII); FUNCTIONS IN: DNA topoisomerase activity, DNA-dependent ATPase activity, DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, ATP binding; INVOLVED IN: DNA topological change, chromosome segregation, DNA metabolic process; LOCATED IN: DNA topoisomerase complex (ATP-hydrolyzing), nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase, type IIA, subunit A or C-terminal (InterPro:IPR002205), DNA topoisomerase, type IIA, conserved site (InterPro:IPR018522), DNA topoisomerase, type IIA, subunit A or C-terminal, alpha-beta (InterPro:IPR013758), DNA topoisomerase, type IIA, subunit B, region 2 (InterPro:IPR013506), DNA topoisomerase, type IIA, subunit A, alpha-helical (InterPro:IPR013757), ATP-binding region, ATPase-like (InterPro:IPR003594), DNA topoisomerase, type IIA, subunit B or N-terminal, alpha-beta (InterPro:IPR013759), DNA topoisomerase, type IIA, subunit B or N-terminal (InterPro:IPR001241), DNA topoisomerase II, eukaryotic-type (InterPro:IPR001154), DNA topoisomerase, type IIA, central (InterPro:IPR013760); BEST Arabidopsis thaliana protein match is: DNA topoisomerase, ATP-hydrolyzing, putative / DNA topoisomerase II, putative / DNA gyrase, putative (TAIR:AT5G04130.1); Has 34604 Blast hits to 32158 proteins in 4113 species: Archae - 105; Bacteria - 17933; Metazoa - 2638; Fungi - 1205; Plants - 377; Viruses - 140; Other Eukaryotes - 12206 (source: NCBI BLink).  protein_id AT3G23890.1p  transcript_id AT3G23890.1  protein_id AT3G23890.1p  transcript_id AT3G23890.1  
At3g23890	chr3:008624931	0.0	W/8624931-8625506,8625682-8625977,8626064-8626130,8626213-8626483,8626578-8626774,8626850-8627059,8627152-8627265,8627362-8627475,8627570-8627734,8627818-8628159,8628232-8628365,8628440-8628788,8628869-8629055,8629139-8629188,8629276-8629716,8629808-8629994,8630276-8630349,8630455-8630536,8630646-8631106	AT3G23890.2  CDS  gene_syn ATTOPII, TOPII, TOPOISOMERASE II  gene TOPII  function Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in proliferative tissues.  go_component nucleus|GO:0005634|7838729|IDA  go_component DNA topoisomerase complex (ATP-hydrolyzing)|GO:0009330||ISS  go_process DNA metabolic process|GO:0006259||ISS  go_process DNA topological change|GO:0006265||ISS  go_process chromosome segregation|GO:0007059||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA topoisomerase activity|GO:0003916|14558665|ISS  go_function DNA topoisomerase (ATP-hydrolyzing) activity|GO:0003918||ISS  go_function ATP binding|GO:0005524||ISS  go_function DNA-dependent ATPase activity|GO:0008094||ISS  product TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/ DNA-dependent ATPase  note TOPOISOMERASE II (TOPII); FUNCTIONS IN: DNA topoisomerase activity, DNA-dependent ATPase activity, DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, ATP binding; INVOLVED IN: DNA topological change, chromosome segregation, DNA metabolic process; LOCATED IN: DNA topoisomerase complex (ATP-hydrolyzing), nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase, type IIA, subunit A or C-terminal (InterPro:IPR002205), DNA topoisomerase, type IIA, conserved site (InterPro:IPR018522), DNA topoisomerase, type IIA, subunit A or C-terminal, alpha-beta (InterPro:IPR013758), DNA topoisomerase, type IIA, subunit B, region 2 (InterPro:IPR013506), DNA topoisomerase, type IIA, subunit A, alpha-helical (InterPro:IPR013757), ATP-binding region, ATPase-like (InterPro:IPR003594), DNA topoisomerase, type IIA, subunit B or N-terminal, alpha-beta (InterPro:IPR013759), DNA topoisomerase, type IIA, subunit B or N-terminal (InterPro:IPR001241), DNA topoisomerase II, eukaryotic-type (InterPro:IPR001154), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721), DNA topoisomerase, type IIA, central (InterPro:IPR013760); BEST Arabidopsis thaliana protein match is: DNA topoisomerase, ATP-hydrolyzing, putative / DNA topoisomerase II, putative / DNA gyrase, putative (TAIR:AT5G04130.1); Has 28583 Blast hits to 28300 proteins in 4076 species: Archae - 107; Bacteria - 16639; Metazoa - 711; Fungi - 453; Plants - 157; Viruses - 108; Other Eukaryotes - 10408 (source: NCBI BLink).  protein_id AT3G23890.2p  transcript_id AT3G23890.2  protein_id AT3G23890.2p  transcript_id AT3G23890.2  
At3g23900	chr3:008635276	0.0	C/8635276-8635852,8634745-8635182,8634109-8634616,8632717-8633998	AT3G23900.2  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Filamin/ABP280 repeat (InterPro:IPR001298), RNA recognition motif, RNP-1 (InterPro:IPR000504), Immunoglobulin-like fold (InterPro:IPR013783), Immunoglobulin E-set (InterPro:IPR014756), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Filamin/ABP280 repeat-like (InterPro:IPR017868); Has 90522 Blast hits to 37992 proteins in 1321 species: Archae - 47; Bacteria - 5688; Metazoa - 50883; Fungi - 8841; Plants - 4934; Viruses - 645; Other Eukaryotes - 19484 (source: NCBI BLink).  protein_id AT3G23900.2p  transcript_id AT3G23900.2  protein_id AT3G23900.2p  transcript_id AT3G23900.2  
At3g23900	chr3:008635276	0.0	C/8635276-8635852,8634745-8635182,8634109-8634616,8632737-8633998,8632587-8632651,8632404-8632484,8631941-8631973	AT3G23900.1  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Filamin/ABP280 repeat (InterPro:IPR001298), Immunoglobulin-like fold (InterPro:IPR013783), RNA recognition motif, RNP-1 (InterPro:IPR000504), Immunoglobulin E-set (InterPro:IPR014756), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Filamin/ABP280 repeat-like (InterPro:IPR017868); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23910.1); Has 96078 Blast hits to 41044 proteins in 1368 species: Archae - 58; Bacteria - 6421; Metazoa - 52911; Fungi - 9569; Plants - 5171; Viruses - 712; Other Eukaryotes - 21236 (source: NCBI BLink).  protein_id AT3G23900.1p  transcript_id AT3G23900.1  protein_id AT3G23900.1p  transcript_id AT3G23900.1  
At3g23910	chr3:008639295	0.0	C/8639295-8639344,8639103-8639214,8638955-8639018,8638771-8638872,8638608-8638672,8638449-8638529,8638009-8638088,8637718-8637934,8637532-8637587,8637267-8637395,8636970-8637153,8636594-8636719	AT3G23910.1  CDS  go_component cellular_component|GO:0005575||ND  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24255.2); Has 456 Blast hits to 427 proteins in 106 species: Archae - 19; Bacteria - 37; Metazoa - 146; Fungi - 47; Plants - 55; Viruses - 6; Other Eukaryotes - 146 (source: NCBI BLink).  protein_id AT3G23910.1p  transcript_id AT3G23910.1  protein_id AT3G23910.1p  transcript_id AT3G23910.1  
At3g23920	chr3:008641722	0.0	W/8641722-8642314,8642852-8643062,8643186-8643296,8643387-8644199	AT3G23920.1  CDS  gene_syn BAM1, BETA-AMYLASE 1, BETA-AMYLASE 7, BMY7, TR-BAMY  gene BAM1  function Encodes a chloroplast beta-amylase. Is necessary for leaf starch breakdown in the absence of BAM3.  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process starch catabolic process|GO:0005983|18390594|IMP  go_function beta-amylase activity|GO:0016161|18390594|IDA  go_function beta-amylase activity|GO:0016161||ISS  product BAM1 (BETA-AMYLASE 1); beta-amylase  note BETA-AMYLASE 1 (BAM1); FUNCTIONS IN: beta-amylase activity; INVOLVED IN: starch catabolic process; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14, conserved site (InterPro:IPR018238), Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 14B, plant (InterPro:IPR001371), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: CT-BMY (CHLOROPLAST BETA-AMYLASE); beta-amylase (TAIR:AT4G17090.1); Has 516 Blast hits to 515 proteins in 119 species: Archae - 0; Bacteria - 68; Metazoa - 0; Fungi - 0; Plants - 388; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT3G23920.1p  transcript_id AT3G23920.1  protein_id AT3G23920.1p  transcript_id AT3G23920.1  
At3g23930	chr3:008647028	0.0	W/8647028-8647418,8647492-8647775	AT3G23930.1  CDS  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13540.1); Has 9839 Blast hits to 6470 proteins in 434 species: Archae - 58; Bacteria - 550; Metazoa - 4915; Fungi - 656; Plants - 186; Viruses - 86; Other Eukaryotes - 3388 (source: NCBI BLink).  protein_id AT3G23930.1p  transcript_id AT3G23930.1  protein_id AT3G23930.1p  transcript_id AT3G23930.1  
At3g23940	chr3:008648780	0.0	W/8648780-8649307,8649406-8649477,8649578-8649625,8649799-8649953,8650123-8650317,8650395-8650506,8650591-8650660,8650747-8650805,8650914-8651037,8651132-8651202,8651282-8651383,8651595-8651675,8652018-8652176,8652273-8652323	AT3G23940.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_process metabolic process|GO:0008152||IEA  go_process branched chain family amino acid biosynthetic process|GO:0009082||IEA  go_process isoleucine biosynthetic process|GO:0009097||IEA  go_process valine biosynthetic process|GO:0009099||IEA  go_function catalytic activity|GO:0003824||IEA  go_function dihydroxy-acid dehydratase activity|GO:0004160||IEA  go_function catalytic activity|GO:0003824||ISS  product dehydratase family  note dehydratase family; FUNCTIONS IN: catalytic activity, dihydroxy-acid dehydratase activity; INVOLVED IN: branched chain family amino acid biosynthetic process, isoleucine biosynthetic process, metabolic process, valine biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Dihydroxy-acid dehydratase (InterPro:IPR004404), Dihydroxy-acid and 6-phosphogluconate dehydratase (InterPro:IPR000581); Has 10437 Blast hits to 10433 proteins in 1298 species: Archae - 138; Bacteria - 4265; Metazoa - 2; Fungi - 197; Plants - 21; Viruses - 0; Other Eukaryotes - 5814 (source: NCBI BLink).  protein_id AT3G23940.1p  transcript_id AT3G23940.1  protein_id AT3G23940.1p  transcript_id AT3G23940.1  
At3g23950	chr3:008652908	0.0	C/8652908-8654164	AT3G23950.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G23970.1); Has 266 Blast hits to 265 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 266; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G23950.1p  transcript_id AT3G23950.1  protein_id AT3G23950.1p  transcript_id AT3G23950.1  
At3g23955	chr3:008657314	0.0	C/8657314-8657399,8656787-8657219,8656140-8656237,8655886-8656042,8655648-8655794,8655266-8655550	AT3G23955.1  CDS  gene_syn F14O13.14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G25850.1).  protein_id AT3G23955.1p  transcript_id AT3G23955.1  protein_id AT3G23955.1p  transcript_id AT3G23955.1  
At3g23960	chr3:008657736	0.0	W/8657736-8658944	AT3G23960.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G31470.1); Has 642 Blast hits to 611 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 642; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G23960.1p  transcript_id AT3G23960.1  protein_id AT3G23960.1p  transcript_id AT3G23960.1  
At3g23970	chr3:008660447	0.0	C/8660447-8661688	AT3G23970.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G23950.1); Has 204 Blast hits to 203 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 203; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G23970.1p  transcript_id AT3G23970.1  protein_id AT3G23970.1p  transcript_id AT3G23970.1  
At3g23980	chr3:008667384	0.0	C/8667384-8667440,8666650-8667136,8665990-8666537,8665575-8665694,8665036-8665101,8664677-8664787,8664402-8664478,8664174-8664241,8663978-8664091,8663640-8663824,8663441-8663509,8662986-8663147,8662818-8662898	AT3G23980.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 26003 Blast hits to 15357 proteins in 1029 species: Archae - 180; Bacteria - 2829; Metazoa - 13108; Fungi - 2139; Plants - 868; Viruses - 84; Other Eukaryotes - 6795 (source: NCBI BLink).  protein_id AT3G23980.1p  transcript_id AT3G23980.1  protein_id AT3G23980.1p  transcript_id AT3G23980.1  
At3g23990	chr3:008669013	0.0	W/8669013-8669050,8669241-8669394,8669541-8669700,8669792-8670063,8670149-8670253,8670340-8670426,8670532-8670621,8670708-8670788,8670858-8670926,8671056-8671133,8671247-8671342,8671436-8671535,8671622-8671725,8671807-8671912,8671992-8672070,8672164-8672278	AT3G23990.1  CDS  gene_syn HEAT SHOCK PROTEIN 60, HEAT SHOCK PROTEIN 60-3B, HSP60, HSP60-3B  gene HSP60  function mitochondrial chaperonin HSP. assist in rapid assembly of the oligomeric protein structures in the mitochondria.  go_component mitochondrion|GO:0005739|15276431|IDA  go_component mitochondrion|GO:0005739|17137349|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|11743114|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial matrix|GO:0005759|16407270|IDA  go_component cytosol|GO:0005829|17883376|IEP  go_process mitochondrion organization|GO:0007005|1349837|TAS  go_process response to heat|GO:0009408|1349837|IEP  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_process chaperone-mediated protein complex assembly|GO:0051131||TAS  product HSP60 (HEAT SHOCK PROTEIN 60); ATP binding  note HEAT SHOCK PROTEIN 60 (HSP60); FUNCTIONS IN: ATP binding; INVOLVED IN: response to cadmium ion, response to cyclopentenone, chaperone-mediated protein complex assembly, response to heat, mitochondrion organization; LOCATED IN: cytosol, cytosolic ribosome, mitochondrion, plasma membrane, mitochondrial matrix; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: HSP60-2 (HEAT SHOCK PROTEIN 60-2); ATP binding (TAIR:AT2G33210.1); Has 24266 Blast hits to 24223 proteins in 5113 species: Archae - 384; Bacteria - 14003; Metazoa - 1402; Fungi - 903; Plants - 434; Viruses - 2; Other Eukaryotes - 7138 (source: NCBI BLink).  protein_id AT3G23990.1p  transcript_id AT3G23990.1  protein_id AT3G23990.1p  transcript_id AT3G23990.1  
At3g24000	chr3:008672774	0.0	W/8672774-8674646,8674757-8674881	AT3G24000.1  CDS  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: shoot apex, carpel; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G23330.1); Has 15874 Blast hits to 5333 proteins in 187 species: Archae - 1; Bacteria - 6; Metazoa - 100; Fungi - 81; Plants - 15349; Viruses - 0; Other Eukaryotes - 337 (source: NCBI BLink).  protein_id AT3G24000.1p  transcript_id AT3G24000.1  protein_id AT3G24000.1p  transcript_id AT3G24000.1  
At3g24005	chr3:008675260	0.0	W/8675260-8675746	AT3G24005.1  pseudogenic_transcript  pseudo  gene_syn F14O13.3  note pseudogene, chaperonin hsp60 (fragment), blastp match of 100% identity and 8.1e-06 P-value to GP|22758324|gb|AAN05528.1||AC027038 mitochondrial chaperonin-60 {Oryza sativa (japonica cultivar-group)}  
At3g24010	chr3:008678159	0.0	C/8678159-8678186,8677479-8677550,8677002-8677186,8676773-8676836,8676581-8676668,8676307-8676463,8676120-8676230	AT3G24010.1  CDS  gene_syn ARABIDOPSIS THALIANA INHIBITOR OF GROWTH 1, ATING1, ING1, INHIBITOR OF GROWTH 1  gene ING1  function ING1 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.  go_component nucleus|GO:0005634|19154204|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function methylated histone residue binding|GO:0035064|19154204|IDA  product ING1 (INHIBITOR OF GROWTH 1); DNA binding / methylated histone residue binding  note INHIBITOR OF GROWTH 1 (ING1); FUNCTIONS IN: methylated histone residue binding, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: PHD finger protein-related (TAIR:AT1G54390.6); Has 1223 Blast hits to 1148 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 807; Fungi - 297; Plants - 57; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT3G24010.1p  transcript_id AT3G24010.1  protein_id AT3G24010.1p  transcript_id AT3G24010.1  
At3g24020	chr3:008678827	0.0	W/8678827-8679558	AT3G24020.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function molecular_function|GO:0003674||ND  product disease resistance-responsive family protein  note disease resistance-responsive family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: disease resistance-responsive family protein (TAIR:AT4G13580.1); Has 390 Blast hits to 389 proteins in 32 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 386; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G24020.1p  transcript_id AT3G24020.1  protein_id AT3G24020.1p  transcript_id AT3G24020.1  
At3g24030	chr3:008680375	0.0	C/8680375-8680812,8679862-8680254	AT3G24030.1  CDS  go_process thiamin biosynthetic process|GO:0009228||IEA  go_function hydroxyethylthiazole kinase activity|GO:0004417||IEA  go_component cellular_component|GO:0005575||ND  go_function catalytic activity|GO:0003824||ISS  product hydroxyethylthiazole kinase family protein  note hydroxyethylthiazole kinase family protein; FUNCTIONS IN: catalytic activity, hydroxyethylthiazole kinase activity; INVOLVED IN: thiamin biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hydroxyethylthiazole kinase (InterPro:IPR000417), Hydroxyethylthiazole kinase, monofunctional (InterPro:IPR011144); Has 1376 Blast hits to 1376 proteins in 593 species: Archae - 84; Bacteria - 1080; Metazoa - 1; Fungi - 85; Plants - 22; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT3G24030.1p  transcript_id AT3G24030.1  protein_id AT3G24030.1p  transcript_id AT3G24030.1  
At3g24040	chr3:008682671	0.0	C/8682671-8683211,8682511-8682586,8682271-8682386,8681118-8681638	AT3G24040.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process biological_process|GO:0008150||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein  note glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 14 (InterPro:IPR003406); BEST Arabidopsis thaliana protein match is: glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein (TAIR:AT5G39990.1); Has 454 Blast hits to 452 proteins in 78 species: Archae - 0; Bacteria - 4; Metazoa - 239; Fungi - 0; Plants - 190; Viruses - 14; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT3G24040.1p  transcript_id AT3G24040.1  protein_id AT3G24040.1p  transcript_id AT3G24040.1  
At3g24050	chr3:008686060	0.0	W/8686060-8686218,8686797-8687462	AT3G24050.1  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product GATA transcription factor 1 (GATA-1)  note GATA transcription factor 1 (GATA-1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 3, putative (GATA-3) (TAIR:AT4G34680.2); Has 1004 Blast hits to 980 proteins in 134 species: Archae - 0; Bacteria - 2; Metazoa - 150; Fungi - 352; Plants - 444; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT3G24050.1p  transcript_id AT3G24050.1  protein_id AT3G24050.1p  transcript_id AT3G24050.1  
At3g24060	chr3:008689589	0.0	C/8689589-8690032	AT3G24060.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product self-incompatibility protein-related  note self-incompatibility protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24068.1); Has 40 Blast hits to 39 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G24060.1p  transcript_id AT3G24060.1  protein_id AT3G24060.1p  transcript_id AT3G24060.1  
At3g24065	chr3:008690737	0.0	C/8690737-8691144	AT3G24065.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24068.1); Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G24065.1p  transcript_id AT3G24065.1  protein_id AT3G24065.1p  transcript_id AT3G24065.1  
At3g24068	chr3:008692266	0.0	C/8692266-8692667	AT3G24068.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24065.1); Has 16 Blast hits to 16 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G24068.1p  transcript_id AT3G24068.1  protein_id AT3G24068.1p  transcript_id AT3G24068.1  
At3g24070	chr3:008693543	0.0	W/8693543-8694331	AT3G24070.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc knuckle (CCHC-type) family protein  note zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G13450.1); Has 72 Blast hits to 72 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G24070.1p  transcript_id AT3G24070.1  protein_id AT3G24070.1p  transcript_id AT3G24070.1  
At3g24080	chr3:008695191	0.0	C/8695191-8697107	AT3G24080.1  CDS  go_component cytosol|GO:0005829|18433157|IDA  go_process response to salt stress|GO:0009651|11351099|IEP  go_function molecular_function|GO:0003674||ND  product KRR1 family protein  note KRR1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: KRR1 interacting protein 1, subgroup (InterPro:IPR007851), KRR1 interacting protein 1 (InterPro:IPR018034); Has 54369 Blast hits to 29065 proteins in 1119 species: Archae - 151; Bacteria - 2845; Metazoa - 25262; Fungi - 5868; Plants - 1850; Viruses - 350; Other Eukaryotes - 18043 (source: NCBI BLink).  protein_id AT3G24080.1p  transcript_id AT3G24080.1  protein_id AT3G24080.1p  transcript_id AT3G24080.1  
At3g24080	chr3:008695305	0.0	C/8695305-8697107,8695191-8695280	AT3G24080.2  CDS  go_component cytosol|GO:0005829|18433157|IDA  go_process response to salt stress|GO:0009651|11351099|IEP  go_function molecular_function|GO:0003674||ND  product KRR1 family protein  note KRR1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: KRR1 interacting protein 1, subgroup (InterPro:IPR007851), KRR1 interacting protein 1 (InterPro:IPR018034); Has 18217 Blast hits to 12637 proteins in 580 species: Archae - 40; Bacteria - 807; Metazoa - 7917; Fungi - 1730; Plants - 546; Viruses - 110; Other Eukaryotes - 7067 (source: NCBI BLink).  protein_id AT3G24080.2p  transcript_id AT3G24080.2  protein_id AT3G24080.2p  transcript_id AT3G24080.2  
At3g24090	chr3:008700764	0.0	C/8700764-8700971,8700503-8700675,8700315-8700423,8700019-8700218,8699637-8699801,8699040-8699397,8698720-8698970,8698519-8698633,8698023-8698447,8697838-8697921	AT3G24090.1  CDS  go_component cytoplasm|GO:0005737||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process metabolic process|GO:0008152||IEA  go_process carbohydrate biosynthetic process|GO:0016051||IEA  go_function glutamine-fructose-6-phosphate transaminase (isomerizing) activity|GO:0004360||IEA  go_function sugar binding|GO:0005529||IEA  go_process metabolic process|GO:0008152||ISS  go_function transaminase activity|GO:0008483||ISS  product glutamine-fructose-6-phosphate transaminase (isomerizing)/ sugar binding / transaminase  note glutamine-fructose-6-phosphate transaminase (isomerizing)/ sugar binding / transaminase; FUNCTIONS IN: sugar binding, transaminase activity, glutamine-fructose-6-phosphate transaminase (isomerizing) activity; INVOLVED IN: carbohydrate biosynthetic process, carbohydrate metabolic process, metabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase, class-II (InterPro:IPR000583), Sugar isomerase (SIS) (InterPro:IPR001347), Glucosamine-fructose-6-phosphate aminotransferase, isomerising (InterPro:IPR005855), Glutamine amidotransferase, type II (InterPro:IPR017932); Has 13549 Blast hits to 13541 proteins in 1563 species: Archae - 282; Bacteria - 5465; Metazoa - 354; Fungi - 153; Plants - 57; Viruses - 14; Other Eukaryotes - 7224 (source: NCBI BLink).  protein_id AT3G24090.1p  transcript_id AT3G24090.1  protein_id AT3G24090.1p  transcript_id AT3G24090.1  
At3g24093	chr3:008701462	0.0	C/8701462-8702310	AT3G24093.1  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22961.1); Has 15 Blast hits to 15 proteins in 8 species: Archae - 0; Bacteria - 6; Metazoa - 1; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G24093.1p  transcript_id AT3G24093.1  protein_id AT3G24093.1p  transcript_id AT3G24093.1  
At3g24100	chr3:008703373	0.0	W/8703373-8703379,8703765-8703867,8703946-8704045	AT3G24100.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Four F5 protein (InterPro:IPR007513); BEST Arabidopsis thaliana protein match is: four F5 protein-related / 4F5 protein-related (TAIR:AT4G13615.1); Has 195 Blast hits to 195 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 136; Fungi - 12; Plants - 43; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G24100.1p  transcript_id AT3G24100.1  protein_id AT3G24100.1p  transcript_id AT3G24100.1  
At3g24110	chr3:008705218	0.0	C/8705218-8705413,8704884-8705086,8704635-8704815,8704429-8704538	AT3G24110.1  CDS  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium ion binding (TAIR:AT4G26470.1); Has 6074 Blast hits to 5052 proteins in 758 species: Archae - 0; Bacteria - 19; Metazoa - 2914; Fungi - 734; Plants - 1557; Viruses - 0; Other Eukaryotes - 850 (source: NCBI BLink).  protein_id AT3G24110.1p  transcript_id AT3G24110.1  protein_id AT3G24110.1p  transcript_id AT3G24110.1  
At3g24120	chr3:008707953	0.0	C/8707953-8708148,8707455-8707531,8707172-8707226,8706788-8706866,8706624-8706693,8705925-8706335	AT3G24120.1  CDS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: UNE16 (unfertilized embryo sac 16); transcription factor (TAIR:AT4G13640.1); Has 946 Blast hits to 937 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 39; Fungi - 0; Plants - 895; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT3G24120.1p  transcript_id AT3G24120.1  protein_id AT3G24120.1p  transcript_id AT3G24120.1  
At3g24120	chr3:008707953	0.0	C/8707953-8708148,8707455-8707531,8707172-8707226,8706788-8706866,8706624-8706693,8705925-8706344	AT3G24120.2  CDS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: UNE16 (unfertilized embryo sac 16); transcription factor (TAIR:AT4G13640.2); Has 910 Blast hits to 901 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 897; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT3G24120.2p  transcript_id AT3G24120.2  protein_id AT3G24120.2p  transcript_id AT3G24120.2  
At3g24130	chr3:008713147	0.0	C/8713147-8713361,8712871-8713030,8712553-8712771,8711663-8712076	AT3G24130.1  CDS  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT5G18990.1); Has 1207 Blast hits to 1182 proteins in 176 species: Archae - 2; Bacteria - 251; Metazoa - 1; Fungi - 127; Plants - 825; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G24130.1p  transcript_id AT3G24130.1  protein_id AT3G24130.1p  transcript_id AT3G24130.1  
At3g24140	chr3:008717755	0.0	C/8717755-8717772,8716953-8717618,8716406-8716840,8716090-8716175,8715525-8715564	AT3G24140.1  CDS  gene_syn FAMA, FMA  gene FMA  function Encodes a basic helix-loop-helix transcription factor whose activity is required to promote differentiation of stomatal guard cells and to halt proliferative divisions in their immediate precursors. Both transcript and protein are expressed in and are required for halting divisions at the end of the stomatal lineage. It also has a role in the promotion of guard cell fate and in controlling the transition from guard mother cell to guard cell.  go_component nucleus|GO:0005634|17088607|IDA  go_process guard cell differentiation|GO:0010052|17088607|IMP  go_process positive regulation of cell differentiation|GO:0045597|17088607|IMP  go_process positive regulation of transcription|GO:0045941|17088607|IDA  go_process negative regulation of cell division|GO:0051782|17088607|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription activator activity|GO:0016563|17088607|IDA  product FMA (FAMA); DNA binding / transcription activator/ transcription factor  note FAMA (FMA); FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: negative regulation of cell division, positive regulation of transcription, positive regulation of cell differentiation, guard cell differentiation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT1G22490.1); Has 1002 Blast hits to 988 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 51; Plants - 917; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT3G24140.1p  transcript_id AT3G24140.1  protein_id AT3G24140.1p  transcript_id AT3G24140.1  
At3g24150	chr3:008725486	0.0	C/8725486-8725586,8725285-8725399,8725090-8725204,8724273-8724973	AT3G24150.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32295.1); Has 17 Blast hits to 17 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G24150.1p  transcript_id AT3G24150.1  protein_id AT3G24150.1p  transcript_id AT3G24150.1  
At3g24160	chr3:008726241	0.0	W/8726241-8726294,8726381-8726455,8726774-8726869,8726959-8727034,8727120-8727218,8727336-8727406,8727508-8727612,8727732-8727869,8728338-8728440,8728585-8728793,8728955-8729023	AT3G24160.1  CDS  gene_syn PMP, PUTATIVE TYPE 1 MEMBRANE PROTEIN  gene PMP  function Encodes a putative Type 1 membrane protein (PMP).  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN)  note PUTATIVE TYPE 1 MEMBRANE PROTEIN (PMP); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G24160.1p  transcript_id AT3G24160.1  protein_id AT3G24160.1p  transcript_id AT3G24160.1  
At3g24170	chr3:008733966	0.0	C/8733966-8734115,8733798-8733862,8733642-8733711,8733363-8733434,8732654-8732857,8732358-8732431,8732182-8732265,8732006-8732093,8731815-8731896,8731411-8731484,8731187-8731294,8730986-8731050,8730528-8730641,8730274-8730373,8729952-8730005,8729762-8729857	AT3G24170.1  CDS  gene_syn ATGR1, glutathione-disulfide reductase  gene ATGR1  function Encodes a cytosolic glutathione reductase.  go_component peroxisome|GO:0005777|17951448|IDA  go_process glutathione metabolic process|GO:0006749||IEA  go_process cell redox homeostasis|GO:0045454||IEA  go_function glutathione-disulfide reductase activity|GO:0004362||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_function glutathione-disulfide reductase activity|GO:0004362||ISS  product ATGR1 (glutathione-disulfide reductase); FAD binding / NADP or NADPH binding / glutathione-disulfide reductase/ oxidoreductase  note glutathione-disulfide reductase (ATGR1); FUNCTIONS IN: NADP or NADPH binding, glutathione-disulfide reductase activity, oxidoreductase activity, FAD binding; INVOLVED IN: glutathione metabolic process, cell redox homeostasis; LOCATED IN: peroxisome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, class I, active site (InterPro:IPR012999), Pyridine nucleotide-disulphide oxidoreductase, dimerisation (InterPro:IPR004099), FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), Mercuric reductase (InterPro:IPR000815), Glutathione reductase, plant (InterPro:IPR006324), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: GR (GLUTATHIONE REDUCTASE); ATP binding / glutathione-disulfide reductase (TAIR:AT3G54660.1); Has 22499 Blast hits to 22477 proteins in 1871 species: Archae - 458; Bacteria - 13871; Metazoa - 769; Fungi - 322; Plants - 362; Viruses - 0; Other Eukaryotes - 6717 (source: NCBI BLink).  protein_id AT3G24170.1p  transcript_id AT3G24170.1  protein_id AT3G24170.1p  transcript_id AT3G24170.1  
At3g24170	chr3:008733966	0.0	C/8733966-8734115,8733798-8733862,8733642-8733711,8733363-8733434,8732654-8732857,8732358-8732431,8732182-8732265,8732006-8732093,8731815-8731896,8731411-8731484,8731187-8731294,8730986-8731050,8730528-8730641,8730274-8730373,8729952-8730005,8729762-8729857	AT3G24170.2  CDS  gene_syn ATGR1, glutathione-disulfide reductase  gene ATGR1  function Encodes a cytosolic glutathione reductase.  go_component peroxisome|GO:0005777|17951448|IDA  go_process glutathione metabolic process|GO:0006749||IEA  go_process cell redox homeostasis|GO:0045454||IEA  go_function glutathione-disulfide reductase activity|GO:0004362||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_function glutathione-disulfide reductase activity|GO:0004362||ISS  product ATGR1 (glutathione-disulfide reductase); FAD binding / NADP or NADPH binding / glutathione-disulfide reductase/ oxidoreductase  note glutathione-disulfide reductase (ATGR1); FUNCTIONS IN: glutathione-disulfide reductase activity, NADP or NADPH binding, oxidoreductase activity, FAD binding; INVOLVED IN: glutathione metabolic process, cell redox homeostasis; LOCATED IN: peroxisome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, class I, active site (InterPro:IPR012999), Pyridine nucleotide-disulphide oxidoreductase, dimerisation (InterPro:IPR004099), FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), Mercuric reductase (InterPro:IPR000815), Glutathione reductase, plant (InterPro:IPR006324), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: GR (GLUTATHIONE REDUCTASE); ATP binding / glutathione-disulfide reductase (TAIR:AT3G54660.1); Has 22499 Blast hits to 22477 proteins in 1871 species: Archae - 458; Bacteria - 13871; Metazoa - 769; Fungi - 322; Plants - 362; Viruses - 0; Other Eukaryotes - 6717 (source: NCBI BLink).  protein_id AT3G24170.2p  transcript_id AT3G24170.2  protein_id AT3G24170.2p  transcript_id AT3G24170.2  
At3g24170	chr3:008733966	0.0	C/8733966-8734115,8733798-8733862,8733642-8733711,8733363-8733434,8732654-8732857,8732358-8732431,8732182-8732265,8732006-8732093,8731815-8731896,8731411-8731484,8731187-8731294,8730986-8731050,8730528-8730641,8730274-8730373,8729952-8730005,8729762-8729857	AT3G24170.3  CDS  gene_syn ATGR1, glutathione-disulfide reductase  gene ATGR1  function Encodes a cytosolic glutathione reductase.  go_component peroxisome|GO:0005777|17951448|IDA  go_process glutathione metabolic process|GO:0006749||IEA  go_process cell redox homeostasis|GO:0045454||IEA  go_function glutathione-disulfide reductase activity|GO:0004362||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_function glutathione-disulfide reductase activity|GO:0004362||ISS  product ATGR1 (glutathione-disulfide reductase); FAD binding / NADP or NADPH binding / glutathione-disulfide reductase/ oxidoreductase  note glutathione-disulfide reductase (ATGR1); FUNCTIONS IN: NADP or NADPH binding, glutathione-disulfide reductase activity, oxidoreductase activity, FAD binding; INVOLVED IN: glutathione metabolic process, cell redox homeostasis; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, class I, active site (InterPro:IPR012999), Pyridine nucleotide-disulphide oxidoreductase, dimerisation (InterPro:IPR004099), FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), Mercuric reductase (InterPro:IPR000815), Glutathione reductase, plant (InterPro:IPR006324), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: GR (GLUTATHIONE REDUCTASE); ATP binding / glutathione-disulfide reductase (TAIR:AT3G54660.1); Has 22499 Blast hits to 22477 proteins in 1871 species: Archae - 458; Bacteria - 13871; Metazoa - 769; Fungi - 322; Plants - 362; Viruses - 0; Other Eukaryotes - 6717 (source: NCBI BLink).  protein_id AT3G24170.3p  transcript_id AT3G24170.3  protein_id AT3G24170.3p  transcript_id AT3G24170.3  
At3g24180	chr3:008741067	0.0	C/8741067-8741147,8740881-8740991,8740739-8740795,8740567-8740643,8740382-8740481,8740128-8740201,8739939-8740039,8739754-8739857,8739297-8739350,8739159-8739214,8739033-8739071,8738129-8738270,8737762-8737946,8737129-8737196,8736870-8736942,8736727-8736788,8735373-8736588,8735011-8735263	AT3G24180.1  CDS  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process sphingolipid metabolic process|GO:0006665||IEA  go_process glucosylceramide catabolic process|GO:0006680||IEA  go_function catalytic activity|GO:0003824||IEA  go_function glucosylceramidase activity|GO:0004348||IEA  product catalytic/ glucosylceramidase  note catalytic/ glucosylceramidase; FUNCTIONS IN: glucosylceramidase activity, catalytic activity; INVOLVED IN: glucosylceramide catabolic process, sphingolipid metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glucosylceramidase (InterPro:IPR006775), Six-hairpin glycosidase-like (InterPro:IPR008928), Beta-glucosidase, GBA2 type (InterPro:IPR014551); BEST Arabidopsis thaliana protein match is: catalytic/ glucosylceramidase (TAIR:AT5G49900.1); Has 652 Blast hits to 491 proteins in 117 species: Archae - 24; Bacteria - 224; Metazoa - 167; Fungi - 2; Plants - 140; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT3G24180.1p  transcript_id AT3G24180.1  protein_id AT3G24180.1p  transcript_id AT3G24180.1  
At3g24180	chr3:008741067	0.0	C/8741067-8741147,8740881-8740991,8740739-8740795,8740567-8740643,8740382-8740481,8740128-8740201,8739939-8740039,8739754-8739857,8739297-8739350,8739159-8739214,8739033-8739071,8738129-8738270,8737762-8737946,8737129-8737196,8736870-8736942,8736727-8736788,8735373-8736588,8735011-8735263	AT3G24180.2  CDS  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process sphingolipid metabolic process|GO:0006665||IEA  go_process glucosylceramide catabolic process|GO:0006680||IEA  go_function catalytic activity|GO:0003824||IEA  go_function glucosylceramidase activity|GO:0004348||IEA  product catalytic/ glucosylceramidase  note catalytic/ glucosylceramidase; FUNCTIONS IN: glucosylceramidase activity, catalytic activity; INVOLVED IN: glucosylceramide catabolic process, sphingolipid metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glucosylceramidase (InterPro:IPR006775), Six-hairpin glycosidase-like (InterPro:IPR008928), Beta-glucosidase, GBA2 type (InterPro:IPR014551); BEST Arabidopsis thaliana protein match is: catalytic/ glucosylceramidase (TAIR:AT5G49900.1); Has 652 Blast hits to 491 proteins in 117 species: Archae - 24; Bacteria - 224; Metazoa - 167; Fungi - 2; Plants - 140; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT3G24180.2p  transcript_id AT3G24180.2  protein_id AT3G24180.2p  transcript_id AT3G24180.2  
At3g24190	chr3:008743319	0.0	W/8743319-8743555,8743678-8743827,8743915-8744085,8744477-8744620,8744708-8744813,8744903-8745051,8745151-8745276,8745417-8745560,8746033-8746120,8746237-8746610,8746741-8747064,8747243-8747476,8747569-8747703	AT3G24190.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  product ABC1 family protein  note ABC1 family protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase, core (InterPro:IPR000719), Aminoglycoside phosphotransferase (InterPro:IPR002575), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ABC1 family protein (TAIR:AT1G79600.1); Has 7527 Blast hits to 7489 proteins in 1103 species: Archae - 67; Bacteria - 2650; Metazoa - 374; Fungi - 312; Plants - 357; Viruses - 14; Other Eukaryotes - 3753 (source: NCBI BLink).  protein_id AT3G24190.1p  transcript_id AT3G24190.1  protein_id AT3G24190.1p  transcript_id AT3G24190.1  
At3g24200	chr3:008751050	0.0	C/8751050-8751166,8750685-8750784,8750457-8750600,8750189-8750247,8749789-8749856,8749663-8749714,8749083-8749256,8748402-8748995,8748095-8748310	AT3G24200.2  CDS  go_process ubiquinone biosynthetic process|GO:0006744||IEA  go_process metabolic process|GO:0008152||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen|GO:0016709||IEA  go_function FAD binding|GO:0050660||IEA  go_function monooxygenase activity|GO:0004497||ISS  product FAD binding / monooxygenase/ oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen  note FAD binding / monooxygenase/ oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen; FUNCTIONS IN: oxidoreductase activity, FAD binding, monooxygenase activity, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen; INVOLVED IN: ubiquinone biosynthetic process, metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 (InterPro:IPR010971), Aromatic-ring hydroxylase-like (InterPro:IPR003042), Monooxygenase, FAD-binding (InterPro:IPR002938), Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site (InterPro:IPR018168); Has 6357 Blast hits to 6353 proteins in 914 species: Archae - 2; Bacteria - 3648; Metazoa - 130; Fungi - 342; Plants - 48; Viruses - 0; Other Eukaryotes - 2187 (source: NCBI BLink).  protein_id AT3G24200.2p  transcript_id AT3G24200.2  protein_id AT3G24200.2p  transcript_id AT3G24200.2  
At3g24200	chr3:008751568	0.0	C/8751568-8751575,8751050-8751152,8750685-8750784,8750457-8750600,8750189-8750247,8749789-8749856,8749663-8749714,8749083-8749256,8748402-8748995,8748095-8748310	AT3G24200.1  CDS  go_process ubiquinone biosynthetic process|GO:0006744||IEA  go_process metabolic process|GO:0008152||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen|GO:0016709||IEA  go_function FAD binding|GO:0050660||IEA  go_function monooxygenase activity|GO:0004497||ISS  product FAD binding / monooxygenase/ oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen  note FAD binding / monooxygenase/ oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen; FUNCTIONS IN: oxidoreductase activity, monooxygenase activity, FAD binding, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen; INVOLVED IN: ubiquinone biosynthetic process, metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 (InterPro:IPR010971), FAD dependent oxidoreductase (InterPro:IPR006076), Aromatic-ring hydroxylase-like (InterPro:IPR003042), Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site (InterPro:IPR018168); Has 6355 Blast hits to 6351 proteins in 914 species: Archae - 2; Bacteria - 3646; Metazoa - 130; Fungi - 342; Plants - 48; Viruses - 0; Other Eukaryotes - 2187 (source: NCBI BLink).  protein_id AT3G24200.1p  transcript_id AT3G24200.1  protein_id AT3G24200.1p  transcript_id AT3G24200.1  
At3g24210	chr3:008754134	0.0	C/8754134-8755627,8753712-8754041	AT3G24210.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT1G04780.1); Has 541 Blast hits to 475 proteins in 68 species: Archae - 0; Bacteria - 2; Metazoa - 345; Fungi - 2; Plants - 154; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT3G24210.1p  transcript_id AT3G24210.1  protein_id AT3G24210.1p  transcript_id AT3G24210.1  
At3g24216	chr3:008759713	0.0	C/8759713-8759814	AT3G24216.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G24216.1p  transcript_id AT3G24216.1  protein_id AT3G24216.1p  transcript_id AT3G24216.1  
At3g24220	chr3:008761439	0.0	W/8761439-8763172	AT3G24220.1  CDS  gene_syn ATNCED6, NCED6, NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 6  gene NCED6  function A member of gene NCED-related gene family, encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene declines during the first 12h of imbibition.  go_component chloroplast thylakoid membrane|GO:0009535|12834401|IDA  go_component chloroplast stroma|GO:0009570|12834401|IDA  go_process response to red or far red light|GO:0009639|17010113|IEP  go_process abscisic acid biosynthetic process|GO:0009688|12834401|TAS  go_process response to red light|GO:0010114|17449805|IEP  go_function 9-cis-epoxycarotenoid dioxygenase activity|GO:0045549|11532178|IDA  go_function 9-cis-epoxycarotenoid dioxygenase activity|GO:0045549|12834401|TAS  product NCED6 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 6); 9-cis-epoxycarotenoid dioxygenase  note NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 6 (NCED6); FUNCTIONS IN: 9-cis-epoxycarotenoid dioxygenase activity; INVOLVED IN: response to red or far red light, abscisic acid biosynthetic process, response to red light; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma; EXPRESSED IN: male gametophyte, flower, chalazal cyst, endosperm, seed; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, chalazal and micropylar domain establishment; CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: NCED9 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 9); 9-cis-epoxycarotenoid dioxygenase (TAIR:AT1G78390.1); Has 2149 Blast hits to 2128 proteins in 350 species: Archae - 10; Bacteria - 524; Metazoa - 236; Fungi - 118; Plants - 563; Viruses - 0; Other Eukaryotes - 698 (source: NCBI BLink).  protein_id AT3G24220.1p  transcript_id AT3G24220.1  protein_id AT3G24220.1p  transcript_id AT3G24220.1  
At3g24225	chr3:008768948	0.0	W/8768948-8769172	AT3G24225.1  CDS  gene_syn CLAVATA3/ESR-RELATED 19, CLE19, EMBRYO SURROUNDING REGION 19, ESR19  gene CLE19  function Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can partially replace CLV3 function in vivo. Regulates root meristem size in a SCR and SHR-independent pathway.  go_component apoplast|GO:0048046|11457943|RCA  go_process cell fate specification|GO:0001708|16055633|IMP  go_process signal transduction|GO:0007165||ISS  go_process regulation of root meristem growth|GO:0010082|12932329|IMP  go_function receptor binding|GO:0005102||ISS  go_function protein binding|GO:0005515|11457943|ISS  product CLE19 (CLAVATA3/ESR-RELATED 19); protein binding / receptor binding  note CLAVATA3/ESR-RELATED 19 (CLE19); FUNCTIONS IN: protein binding, receptor binding; INVOLVED IN: regulation of root meristem growth, cell fate specification, signal transduction; LOCATED IN: apoplast; EXPRESSED IN: root; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G24225.1p  transcript_id AT3G24225.1  protein_id AT3G24225.1p  transcript_id AT3G24225.1  
At3g24230	chr3:008774637	0.0	W/8774637-8774749,8775078-8775131,8775483-8775566,8775950-8776592,8776677-8776780,8776869-8777007,8777085-8777306	AT3G24230.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function lyase activity|GO:0016829||ISS  go_function pectate lyase activity|GO:0030570||ISS  product pectate lyase family protein  note pectate lyase family protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: pectate lyase family protein (TAIR:AT4G13710.1); Has 899 Blast hits to 894 proteins in 161 species: Archae - 0; Bacteria - 388; Metazoa - 0; Fungi - 105; Plants - 397; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G24230.1p  transcript_id AT3G24230.1  protein_id AT3G24230.1p  transcript_id AT3G24230.1  
At3g24240	chr3:008780551	0.0	W/8780551-8783446,8783621-8784150	AT3G24240.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT5G48940.1); Has 166598 Blast hits to 96353 proteins in 2483 species: Archae - 103; Bacteria - 14082; Metazoa - 61890; Fungi - 7001; Plants - 61978; Viruses - 341; Other Eukaryotes - 21203 (source: NCBI BLink).  protein_id AT3G24240.1p  transcript_id AT3G24240.1  protein_id AT3G24240.1p  transcript_id AT3G24240.1  
At3g24250	chr3:008786764	0.0	W/8786764-8787177	AT3G24250.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 27597 Blast hits to 6777 proteins in 597 species: Archae - 8; Bacteria - 16125; Metazoa - 5558; Fungi - 750; Plants - 2760; Viruses - 273; Other Eukaryotes - 2123 (source: NCBI BLink).  protein_id AT3G24250.1p  transcript_id AT3G24250.1  protein_id AT3G24250.1p  transcript_id AT3G24250.1  
At3g24255	chr3:008788949	0.0	W/8788949-8788998,8789079-8789190,8789275-8789342,8791118-8791236,8791335-8791399,8791478-8791558,8791714-8791793,8791868-8792084,8792215-8792270,8792407-8792535,8792649-8792832,8793083-8793208	AT3G24255.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23910.1).  protein_id AT3G24255.2p  transcript_id AT3G24255.2  protein_id AT3G24255.2p  transcript_id AT3G24255.2  
At3g24255	chr3:008789471	0.0	W/8789471-8789890,8789975-8790598,8790698-8790802,8791083-8791236,8791335-8791399,8791478-8791558,8791714-8791793,8791868-8792084,8792215-8792270,8792407-8792535,8792649-8792832,8793083-8793208	AT3G24255.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23910.1); Has 2302 Blast hits to 2235 proteins in 74 species: Archae - 4; Bacteria - 15; Metazoa - 871; Fungi - 12; Plants - 1295; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT3G24255.1p  transcript_id AT3G24255.1  protein_id AT3G24255.1p  transcript_id AT3G24255.1  
At3g24260	chr3:008793837	0.0	C/8793837-8794961	AT3G24260.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28870.1); Has 139 Blast hits to 137 proteins in 48 species: Archae - 5; Bacteria - 3; Metazoa - 37; Fungi - 2; Plants - 50; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT3G24260.1p  transcript_id AT3G24260.1  protein_id AT3G24260.1p  transcript_id AT3G24260.1  
At3g24270	chr3:008796899	0.0	C/8796899-8797031,8796541-8796821	AT3G24270.1  CDS  gene_syn APUM25, Arabidopsis Pumilio 25  gene APUM25  go_component endomembrane system|GO:0012505||IEA  go_function RNA binding|GO:0003723||IEA  go_function binding|GO:0005488||IEA  product APUM25 (Arabidopsis Pumilio 25); RNA binding / binding  note Arabidopsis Pumilio 25 (APUM25); FUNCTIONS IN: RNA binding, binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding region (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); Has 8 Blast hits to 8 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G24270.1p  transcript_id AT3G24270.1  protein_id AT3G24270.1p  transcript_id AT3G24270.1  
At3g24280	chr3:008799138	0.0	C/8799138-8799374	AT3G24280.1  CDS  gene_syn SMAP2, small acidic protein 2  gene SMAP2  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733|19307045|IMP  go_function molecular_function|GO:0003674||ND  product SMAP2 (small acidic protein 2)  note small acidic protein 2 (SMAP2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G24280.1p  transcript_id AT3G24280.1  protein_id AT3G24280.1p  transcript_id AT3G24280.1  
At3g24290	chr3:008801400	0.0	C/8801400-8802890	AT3G24290.1  CDS  gene_syn AMMONIUM TRANSPORTER 1;5, AMT1;5  gene AMT1;5  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_process ammonium transport|GO:0015696|17693533|IDA  go_function ammonium transmembrane transporter activity|GO:0008519|17693533|IDA  go_function ammonium transmembrane transporter activity|GO:0008519||ISS  product AMT1;5 (AMMONIUM TRANSPORTER 1;5); ammonium transmembrane transporter  note AMMONIUM TRANSPORTER 1;5 (AMT1;5); FUNCTIONS IN: ammonium transmembrane transporter activity; INVOLVED IN: ammonium transport, transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: root epidermis, root tip, root hair; CONTAINS InterPro DOMAIN/s: Ammonium transporter (InterPro:IPR001905), Ammonium transporter, conserved site (InterPro:IPR018047), Rh-like protein/ammonium transporter (InterPro:IPR010256); BEST Arabidopsis thaliana protein match is: AMT1;3 (AMMONIUM TRANSPORTER 1;3); ammonium transmembrane transporter (TAIR:AT3G24300.1); Has 8923 Blast hits to 8919 proteins in 1166 species: Archae - 146; Bacteria - 2588; Metazoa - 369; Fungi - 298; Plants - 288; Viruses - 0; Other Eukaryotes - 5234 (source: NCBI BLink).  protein_id AT3G24290.1p  transcript_id AT3G24290.1  protein_id AT3G24290.1p  transcript_id AT3G24290.1  
At3g24300	chr3:008805858	0.0	C/8805858-8807354	AT3G24300.1  CDS  gene_syn AMMONIUM TRANSPORTER 1;3, AMT1;3, ATAMT1;3  gene AMT1;3  function Encodes a plasma membrane localized ammonium transporter.  go_component plasma membrane|GO:0005886|17026539|IDA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_process ammonium transport|GO:0015696|17026539|IMP  go_function ammonium transmembrane transporter activity|GO:0008519|17026539|IMP  go_function ammonium transmembrane transporter activity|GO:0008519||ISS  product AMT1;3 (AMMONIUM TRANSPORTER 1;3); ammonium transmembrane transporter  note AMMONIUM TRANSPORTER 1;3 (AMT1;3); FUNCTIONS IN: ammonium transmembrane transporter activity; INVOLVED IN: ammonium transport, transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: root tip, root hair; CONTAINS InterPro DOMAIN/s: Ammonium transporter (InterPro:IPR001905), Ammonium transporter, conserved site (InterPro:IPR018047), Rh-like protein/ammonium transporter (InterPro:IPR010256); BEST Arabidopsis thaliana protein match is: AMT1;5 (AMMONIUM TRANSPORTER 1;5); ammonium transmembrane transporter (TAIR:AT3G24290.1); Has 8911 Blast hits to 8903 proteins in 1164 species: Archae - 146; Bacteria - 2595; Metazoa - 399; Fungi - 300; Plants - 290; Viruses - 0; Other Eukaryotes - 5181 (source: NCBI BLink).  protein_id AT3G24300.1p  transcript_id AT3G24300.1  protein_id AT3G24300.1p  transcript_id AT3G24300.1  
At3g24310	chr3:008812050	0.0	C/8812050-8812330,8811336-8811864	AT3G24310.1  CDS  gene_syn ATMYB71, K7M2_10, MYB DOMAIN PROTEIN 71, MYB305, SNAPDRAGON MYB PROTEIN 305 HOMOLOG, myb domain protein 305  gene MYB305  function snapdragon myb protein 305 homolog (myb)  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|8893552|ISS  go_function transcription factor activity|GO:0003700||ISS  product MYB305 (myb domain protein 305); DNA binding / transcription factor  note myb domain protein 305 (MYB305); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: AtMYB79 (myb domain protein 79); DNA binding / transcription factor (TAIR:AT4G13480.1); Has 6387 Blast hits to 5835 proteins in 352 species: Archae - 0; Bacteria - 0; Metazoa - 660; Fungi - 316; Plants - 3759; Viruses - 4; Other Eukaryotes - 1648 (source: NCBI BLink).  protein_id AT3G24310.1p  transcript_id AT3G24310.1  protein_id AT3G24310.1p  transcript_id AT3G24310.1  
At3g24315	chr3:008822156	0.0	C/8822156-8822445,8821708-8821777,8821552-8821607,8821297-8821372,8821148-8821184,8820932-8821046,8820599-8820836	AT3G24315.1  CDS  gene_syn AtSec20  gene AtSec20  go_function molecular_function|GO:0003674||ND  product AtSec20  note AtSec20; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sec20 (InterPro:IPR005606); Has 205 Blast hits to 205 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 64; Plants - 27; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT3G24315.1p  transcript_id AT3G24315.1  protein_id AT3G24315.1p  transcript_id AT3G24315.1  
At3g24320	chr3:008829459	0.0	C/8829459-8829571,8829135-8829276,8828947-8829044,8828611-8828686,8828358-8828477,8827856-8827903,8827702-8827766,8827486-8827571,8827210-8827374,8826835-8826944,8826637-8826742,8826465-8826540,8826323-8826381,8826162-8826229,8825881-8826054,8825480-8825689,8825095-8825351,8824860-8825003,8824729-8824786,8824303-8824602,8823558-8824205,8823229-8823462	AT3G24320.1  CDS  gene_syn ATMSH1, CHLOROPLAST MUTATOR, CHM, CHM1, MSH1, MUTL PROTEIN HOMOLOG 1  gene MSH1  function Promotes re-arrangements of mitochondrial genome. Mutations affects mitochondrial gene expression, and impairs mitochondrial function. Dual targeting of the protein to mitochondria and chloroplasts caused by alternative translation initiation.  go_function catalytic activity|GO:0003824||IEA  go_function nuclease activity|GO:0004518||IEA  go_function ATP binding|GO:0005524||IEA  go_function mismatched DNA binding|GO:0030983||IEA  go_component mitochondrion|GO:0005739|16169894|IDA  go_component chloroplast|GO:0009507|16169894|IDA  go_process mitochondrial genome maintenance|GO:0000002|8776901|IMP  go_process mismatch repair|GO:0006298||ISS  go_process mitochondrial DNA metabolic process|GO:0032042|12730382|IMP  go_function damaged DNA binding|GO:0003684||ISS  go_function ATP binding|GO:0005524||ISS  product MSH1 (MUTL PROTEIN HOMOLOG 1); ATP binding / catalytic/ damaged DNA binding / mismatched DNA binding / nuclease  note MUTL PROTEIN HOMOLOG 1 (MSH1); FUNCTIONS IN: damaged DNA binding, mismatched DNA binding, catalytic activity, ATP binding, nuclease activity; INVOLVED IN: mismatch repair, mitochondrial genome maintenance, mitochondrial DNA metabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase, trypsin-like serine and cysteine (InterPro:IPR009003), DNA mismatch repair protein MutS, N-terminal (InterPro:IPR016151), Excinuclease ABC, C subunit, N-terminal (InterPro:IPR000305), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS-like, N-terminal (InterPro:IPR007695); BEST Arabidopsis thaliana protein match is: MSH6 (MUTS HOMOLOG 6); damaged DNA binding (TAIR:AT4G02070.1); Has 8452 Blast hits to 7757 proteins in 1530 species: Archae - 115; Bacteria - 5390; Metazoa - 514; Fungi - 498; Plants - 196; Viruses - 3; Other Eukaryotes - 1736 (source: NCBI BLink).  protein_id AT3G24320.1p  transcript_id AT3G24320.1  protein_id AT3G24320.1p  transcript_id AT3G24320.1  
At3g24330	chr3:008830336	0.0	W/8830336-8831838	AT3G24330.1  CDS  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to membrane; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT3G04010.1); Has 1701 Blast hits to 1650 proteins in 132 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 27; Plants - 1657; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G24330.1p  transcript_id AT3G24330.1  protein_id AT3G24330.1p  transcript_id AT3G24330.1  
At3g24332	chr3:008830336	0.0	C/8830336-8831838	AT3G24332.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT3G24330  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G24332.1  
At3g24340	chr3:008834283	0.0	C/8834283-8835722,8834024-8834143,8832085-8833923	AT3G24340.1  CDS  gene_syn chr40, chromatin remodeling 40  gene chr40  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function DNA binding|GO:0003677||ISS  go_function helicase activity|GO:0004386||ISS  go_function ATP binding|GO:0005524||ISS  product chr40 (chromatin remodeling 40); ATP binding / DNA binding / helicase/ nucleic acid binding  note chromatin remodeling 40 (chr40); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chr31 (chromatin remodeling 31); ATP binding / DNA binding / helicase/ nucleic acid binding (TAIR:AT1G05490.1); Has 18122 Blast hits to 13315 proteins in 1252 species: Archae - 101; Bacteria - 6131; Metazoa - 4347; Fungi - 2994; Plants - 868; Viruses - 188; Other Eukaryotes - 3493 (source: NCBI BLink).  protein_id AT3G24340.1p  transcript_id AT3G24340.1  protein_id AT3G24340.1p  transcript_id AT3G24340.1  
At3g24350	chr3:008837733	0.0	W/8837733-8837976,8838212-8838468,8838557-8838729,8838927-8839136,8839243-8839402	AT3G24350.1  CDS  gene_syn ATSYP32, SYNTAXIN OF PLANTS 32, SYP32  gene SYP32  function member of Glycoside Hydrolase Family 17  go_component membrane|GO:0016020||IEA  go_process intracellular protein transport|GO:0006886|11115874|TAS  go_process membrane fusion|GO:0006944|11115874|TAS  go_function SNAP receptor activity|GO:0005484|11115874|TAS  product SYP32 (SYNTAXIN OF PLANTS 32); SNAP receptor  note SYNTAXIN OF PLANTS 32 (SYP32); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion, intracellular protein transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: SYP31 (SYNTAXIN OF PLANTS 31); SNAP receptor (TAIR:AT5G05760.1); Has 1018 Blast hits to 1017 proteins in 170 species: Archae - 0; Bacteria - 8; Metazoa - 464; Fungi - 253; Plants - 117; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).  protein_id AT3G24350.1p  transcript_id AT3G24350.1  protein_id AT3G24350.1p  transcript_id AT3G24350.1  
At3g24360	chr3:008842583	0.0	C/8842583-8842799,8842412-8842513,8841906-8841958,8841402-8841536,8841212-8841308,8840986-8841115,8840693-8840871,8840366-8840493,8840188-8840289,8839832-8839933	AT3G24360.2  CDS  go_component membrane|GO:0016020|17432890|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_process fatty acid beta-oxidation|GO:0006635||ISS  go_function 3-hydroxyisobutyryl-CoA hydrolase activity|GO:0003860||ISS  product enoyl-CoA hydratase/isomerase family protein  note enoyl-CoA hydratase/isomerase family protein; FUNCTIONS IN: 3-hydroxyisobutyryl-CoA hydrolase activity, catalytic activity; INVOLVED IN: fatty acid beta-oxidation, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: catalytic (TAIR:AT4G13360.1); Has 15062 Blast hits to 15059 proteins in 1074 species: Archae - 147; Bacteria - 9068; Metazoa - 799; Fungi - 364; Plants - 273; Viruses - 0; Other Eukaryotes - 4411 (source: NCBI BLink).  protein_id AT3G24360.2p  transcript_id AT3G24360.2  protein_id AT3G24360.2p  transcript_id AT3G24360.2  
At3g24360	chr3:008842583	0.0	C/8842583-8842799,8842412-8842513,8842175-8842239,8841402-8841536,8841212-8841308,8840986-8841115,8840693-8840871,8840366-8840493,8840188-8840289,8839832-8839933	AT3G24360.1  CDS  go_component membrane|GO:0016020|17432890|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_process fatty acid beta-oxidation|GO:0006635||ISS  go_function 3-hydroxyisobutyryl-CoA hydrolase activity|GO:0003860||ISS  product enoyl-CoA hydratase/isomerase family protein  note enoyl-CoA hydratase/isomerase family protein; FUNCTIONS IN: 3-hydroxyisobutyryl-CoA hydrolase activity, catalytic activity; INVOLVED IN: fatty acid beta-oxidation, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: catalytic (TAIR:AT4G13360.1); Has 14187 Blast hits to 14184 proteins in 1060 species: Archae - 149; Bacteria - 8600; Metazoa - 766; Fungi - 353; Plants - 272; Viruses - 0; Other Eukaryotes - 4047 (source: NCBI BLink).  protein_id AT3G24360.1p  transcript_id AT3G24360.1  protein_id AT3G24360.1p  transcript_id AT3G24360.1  
At3g24365	chr3:008843713	0.0	W/8843713-8848114	AT3G24365.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 8.7e-80 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g24370	chr3:008848781	0.0	C/8848781-8849344	AT3G24370.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G27800.1); contains domain Hedgehog/intein (Hint) domain (SSF51294)  
At3g24380	chr3:008850138	0.0	C/8850138-8850830	AT3G24380.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14774.1); similar to hypothetical protein 40.t00047 [Brassica oleracea] (GB:ABD65162.1)  
At3g24385	chr3:008851746	0.0	C/8851746-8852437	AT3G24385.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At3g24390	chr3:008852803	0.0	C/8852803-8857631	AT3G24390.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G27780.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G36860.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G25886.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At3g24400	chr3:008858484	0.0	C/8858484-8861822	AT3G24400.1  pseudogenic_transcript  pseudo  note pseudogene, protein kinase family, contains Pfam PF00069: Protein kinase domain; blastp match of 72% identity and 1.7e-148 P-value to GP|13397640|emb|CAC34703.1||AX088876 unnamed protein product {Brassica napus}  
At3g24420	chr3:008864495	0.0	C/8864495-8864883,8863111-8863543	AT3G24420.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT4G37470.1); Has 4615 Blast hits to 4615 proteins in 817 species: Archae - 22; Bacteria - 3290; Metazoa - 123; Fungi - 31; Plants - 154; Viruses - 2; Other Eukaryotes - 993 (source: NCBI BLink).  protein_id AT3G24420.1p  transcript_id AT3G24420.1  protein_id AT3G24420.1p  transcript_id AT3G24420.1  
At3g24430	chr3:008871956	0.0	C/8871956-8872154,8871700-8871848,8871560-8871610,8871249-8871404,8870768-8870911,8870545-8870687,8870395-8870464,8870094-8870189,8869863-8869952,8869691-8869744,8869364-8869487,8869134-8869258,8868909-8869031,8868731-8868805	AT3G24430.1  CDS  gene_syn HCF101, HIGH-CHLOROPHYLL-FLUORESCENCE 101  gene HCF101  function encodes a MRP-like protein with a nucleotide-binding domain.  go_component chloroplast|GO:0009507|18431481|IDA  go_function ATP binding|GO:0005524||IEA  product HCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101); ATP binding  note HIGH-CHLOROPHYLL-FLUORESCENCE 101 (HCF101); FUNCTIONS IN: ATP binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mrp, conserved site (InterPro:IPR000808), Protein of unknown function DUF59 (InterPro:IPR002744); BEST Arabidopsis thaliana protein match is: INDL (IND1(IRON-SULFUR PROTEIN REQUIRED FOR NADH DEHYDROGENASE)-LIKE) (TAIR:AT4G19540.1); Has 10747 Blast hits to 10728 proteins in 1499 species: Archae - 357; Bacteria - 5189; Metazoa - 314; Fungi - 278; Plants - 119; Viruses - 0; Other Eukaryotes - 4490 (source: NCBI BLink).  protein_id AT3G24430.1p  transcript_id AT3G24430.1  protein_id AT3G24430.1p  transcript_id AT3G24430.1  
At3g24440	chr3:008877747	0.0	C/8877747-8878171,8877375-8877667,8876207-8877297	AT3G24440.1  CDS  gene_syn VERNALIZATION 5, VIL1, VIN3-LIKE 1, VRN5  gene VRN5  function Encodes Vernalization Insensitive 3-like 1 (VIL1). VIL1 is involved in the photoperiod and vernalization of Arabidopsis by regulating expression of the related floral repressors Flowering Locus C (FLC) and Flowering Locus M (FLM). VIL1, along with VIN3 (Vernalization Insensitive 3) is necessary for the chromatin modification to FLC and FLM.  go_component chloroplast|GO:0009507||IEA  go_process regulation of flower development|GO:0009909|17114575|IGI  go_process vernalization response|GO:0010048|17114575|IMP  go_process chromatin modification|GO:0016568|17114575|IMP  go_process histone methylation|GO:0016571|17114575|IMP  go_function molecular_function|GO:0003674||ND  product VRN5 (VERNALIZATION 5)  note VERNALIZATION 5 (VRN5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: histone methylation, vernalization response, chromatin modification, regulation of flower development; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Fibronectin, type III-like fold (InterPro:IPR008957), Fibronectin, type III (InterPro:IPR003961); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30200.3); Has 136 Blast hits to 120 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 135; Viruses - 1; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G24440.1p  transcript_id AT3G24440.1  protein_id AT3G24440.1p  transcript_id AT3G24440.1  
At3g24450	chr3:008881390	0.0	C/8881390-8881611,8880970-8881045,8880286-8880410	AT3G24450.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_process copper ion transport|GO:0006825||ISS  go_function copper ion binding|GO:0005507||ISS  product copper-binding family protein  note copper-binding family protein; FUNCTIONS IN: copper ion binding, metal ion binding; INVOLVED IN: copper ion transport, metal ion transport; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT2G37390.1); Has 407 Blast hits to 390 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 404; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G24450.1p  transcript_id AT3G24450.1  protein_id AT3G24450.1p  transcript_id AT3G24450.1  
At3g24460	chr3:008889507	0.0	C/8889507-8889717,8889360-8889433,8889105-8889264,8888993-8889017,8888815-8888904,8888554-8888725,8888371-8888444,8886805-8886874,8886505-8886722,8886316-8886389,8886160-8886221	AT3G24460.1  CDS  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  product TMS membrane family protein / tumour differentially expressed (TDE) family protein  note TMS membrane family protein / tumour differentially expressed (TDE) family protein; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: TMS membrane protein/tumour differentially expressed protein (InterPro:IPR005016); BEST Arabidopsis thaliana protein match is: MEE55 (maternal effect embryo arrest 55) (TAIR:AT4G13345.1); Has 619 Blast hits to 597 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 386; Fungi - 104; Plants - 78; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT3G24460.1p  transcript_id AT3G24460.1  protein_id AT3G24460.1p  transcript_id AT3G24460.1  
At3g24465	chr3:008894877	0.0	C/8894877-8895140	AT3G24465.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38378.1); Has 42 Blast hits to 42 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G24465.1p  transcript_id AT3G24465.1  protein_id AT3G24465.1p  transcript_id AT3G24465.1  
At3g24480	chr3:008901154	0.0	C/8901154-8902638	AT3G24480.1  CDS  go_component cell wall|GO:0005618|16287169|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_function structural constituent of cell wall|GO:0005199|12644681|ISS  go_function protein binding|GO:0005515|12644681|ISS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein / extensin family protein  note leucine-rich repeat family protein / extensin family protein; FUNCTIONS IN: structural constituent of cell wall, protein binding; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / extensin family protein (TAIR:AT4G13340.1); Has 100342 Blast hits to 38265 proteins in 1525 species: Archae - 155; Bacteria - 10907; Metazoa - 30260; Fungi - 7648; Plants - 37941; Viruses - 2503; Other Eukaryotes - 10928 (source: NCBI BLink).  protein_id AT3G24480.1p  transcript_id AT3G24480.1  protein_id AT3G24480.1p  transcript_id AT3G24480.1  
At3g24490	chr3:008911022	0.0	W/8911022-8912023	AT3G24490.1  CDS  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MADF domain (InterPro:IPR006578); BEST Arabidopsis thaliana protein match is: ASIL1 (ARABIDOPSIS 6B-INTERACTING PROTEIN 1-LIKE 1); sequence-specific DNA binding / transcription factor (TAIR:AT1G54060.1); Has 2488 Blast hits to 1665 proteins in 165 species: Archae - 0; Bacteria - 71; Metazoa - 1163; Fungi - 123; Plants - 222; Viruses - 36; Other Eukaryotes - 873 (source: NCBI BLink).  protein_id AT3G24490.1p  transcript_id AT3G24490.1  protein_id AT3G24490.1p  transcript_id AT3G24490.1  
At3g24495	chr3:008917746	0.0	C/8917746-8918086,8917094-8917622,8916914-8917009,8916786-8916841,8916301-8916367,8916088-8916183,8915506-8915637,8915367-8915400,8915225-8915272,8914921-8915120,8914712-8914838,8914317-8914594,8913978-8914172,8913381-8913803,8913201-8913297,8912987-8913114,8912418-8912900	AT3G24495.1  CDS  gene_syn ARABIDOPSIS THALIANA MUTS HOMOLOG 7, ATMSH7, MSH6-2, MSH7, MUTS HOMOLOG 6-2, MUTS HOMOLOG 7  gene MSH7  function encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH7 exhibit moderate affinity for a (T/G) substrate and weak binding of (+T), suggesting MSH2*MSH7 may be specialized for lesions/base mispairs not tested or for (T/G) mispairs in special contexts.  go_process mismatch repair|GO:0006298||IEA  go_function ATP binding|GO:0005524||IEA  go_function mismatched DNA binding|GO:0030983||IEA  go_process mismatch repair|GO:0006298||ISS  go_function damaged DNA binding|GO:0003684||ISS  go_function ATP binding|GO:0005524||ISS  product MSH7 (MUTS HOMOLOG 7); ATP binding / damaged DNA binding / mismatched DNA binding  note MUTS HOMOLOG 7 (MSH7); FUNCTIONS IN: damaged DNA binding, mismatched DNA binding, ATP binding; INVOLVED IN: mismatch repair; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, connector (InterPro:IPR007860), DNA mismatch repair protein MutS, N-terminal (InterPro:IPR016151), DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS-homolog MSH6 (InterPro:IPR015536), DNA mismatch repair protein MutS-like, N-terminal (InterPro:IPR007695); BEST Arabidopsis thaliana protein match is: MSH6 (MUTS HOMOLOG 6); damaged DNA binding (TAIR:AT4G02070.1); Has 11266 Blast hits to 8790 proteins in 1512 species: Archae - 113; Bacteria - 6282; Metazoa - 865; Fungi - 831; Plants - 283; Viruses - 3; Other Eukaryotes - 2889 (source: NCBI BLink).  protein_id AT3G24495.1p  transcript_id AT3G24495.1  protein_id AT3G24495.1p  transcript_id AT3G24495.1  
At3g24500	chr3:008918755	0.0	W/8918755-8919201	AT3G24500.1  CDS  gene_syn ATMBF1C, MBF1C, MOB24.13, MULTIPROTEIN BRIDGING FACTOR 1C  gene MBF1C  function One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator. May serve as a bridging factor between a bZIP factor and TBP. Its expression is specifically elevated in response to pathogen infection, salinity, drought, heat, hydrogen peroxide, and application of abscisic acid or salicylic acid. Constitutive expression enhances the tolerance of transgenic plants to various biotic and abiotic stresses.  go_component nucleolus|GO:0005730|16283071|IDA  go_process transcription|GO:0006350||ISS  go_process response to heat|GO:0009408|15451167|IEP  go_process response to water deprivation|GO:0009414|15451167|IEP  go_process response to ethylene stimulus|GO:0009723||ISS  go_process response to abscisic acid stimulus|GO:0009737|14988493|IEP  go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS  go_process positive regulation of transcription|GO:0045941|14988493|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|9687012|TAS  go_function transcription coactivator activity|GO:0003713|14988493|IGI  go_function transcription coactivator activity|GO:0003713||ISS  product MBF1C (MULTIPROTEIN BRIDGING FACTOR 1C); DNA binding / transcription coactivator/ transcription factor  note MULTIPROTEIN BRIDGING FACTOR 1C (MBF1C); FUNCTIONS IN: transcription coactivator activity, transcription factor activity, DNA binding; INVOLVED IN: in 7 processes; LOCATED IN: nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lambda repressor-like, DNA-binding (InterPro:IPR010982), Multiprotein bridging factor 1, N-terminal (InterPro:IPR013729), Helix-turn-helix type 3 (InterPro:IPR001387); BEST Arabidopsis thaliana protein match is: MBF1B (MULTIPROTEIN BRIDGING FACTOR 1B); DNA binding / transcription coactivator (TAIR:AT3G58680.1); Has 527 Blast hits to 527 proteins in 193 species: Archae - 36; Bacteria - 12; Metazoa - 168; Fungi - 103; Plants - 85; Viruses - 2; Other Eukaryotes - 121 (source: NCBI BLink).  protein_id AT3G24500.1p  transcript_id AT3G24500.1  protein_id AT3G24500.1p  transcript_id AT3G24500.1  
At3g24503	chr3:008922930	0.0	C/8922930-8923029,8922247-8922389,8921342-8921728,8921045-8921134,8920785-8920958,8920558-8920695,8920323-8920460,8920091-8920152,8919732-8920005	AT3G24503.1  CDS  gene_syn ALDH1A, ALDH2C4, REDUCED EPIDERMAL FLUORESCENCE1, REF1  gene ALDH2C4  function Arabidopsis thaliana aldehyde dehydrogenase AtALDH1a mRNA. a sinapaldehyde dehydrogenase catalyzes both the oxidation of coniferylaldehyde and sinapaldehyde forming ferulic acid and sinapic acid, respectively  go_process phenylpropanoid biosynthetic process|GO:0009699|14729911|IDA  go_function 3-chloroallyl aldehyde dehydrogenase activity|GO:0004028||ISS  go_function aldehyde dehydrogenase (NAD) activity|GO:0004029|11999848|ISS  go_function coniferyl-aldehyde dehydrogenase activity|GO:0050269|14729911|IDA  product ALDH2C4; 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD)/ coniferyl-aldehyde dehydrogenase  note ALDH2C4; FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, coniferyl-aldehyde dehydrogenase activity, aldehyde dehydrogenase (NAD) activity; INVOLVED IN: phenylpropanoid biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: ALDH2B4 (ALDEHYDE DEHYDROGENASE 2B4); 3-chloroallyl aldehyde dehydrogenase/ ATP binding / aldehyde dehydrogenase (NAD) (TAIR:AT3G48000.1); Has 43644 Blast hits to 43358 proteins in 1803 species: Archae - 243; Bacteria - 19845; Metazoa - 2293; Fungi - 1318; Plants - 607; Viruses - 0; Other Eukaryotes - 19338 (source: NCBI BLink).  protein_id AT3G24503.1p  transcript_id AT3G24503.1  protein_id AT3G24503.1p  transcript_id AT3G24503.1  
At3g24506	chr3:008929024	0.0	C/8929024-8929281,8928366-8928557	AT3G24506.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17240.1); Has 4844 Blast hits to 666 proteins in 107 species: Archae - 0; Bacteria - 575; Metazoa - 816; Fungi - 30; Plants - 381; Viruses - 61; Other Eukaryotes - 2981 (source: NCBI BLink).  protein_id AT3G24506.1p  transcript_id AT3G24506.1  protein_id AT3G24506.1p  transcript_id AT3G24506.1  
At3g24508	chr3:008930156	0.0	W/8930156-8930213,8930351-8930544	AT3G24508.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24513.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G24508.1p  transcript_id AT3G24508.1  protein_id AT3G24508.1p  transcript_id AT3G24508.1  
At3g24510	chr3:008932026	0.0	W/8932026-8932083,8932443-8932645	AT3G24510.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, sepal, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24508.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G24510.1p  transcript_id AT3G24510.1  protein_id AT3G24510.1p  transcript_id AT3G24510.1  
At3g24513	chr3:008933920	0.0	W/8933920-8933977,8934191-8934390	AT3G24513.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24508.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G24513.1p  transcript_id AT3G24513.1  protein_id AT3G24513.1p  transcript_id AT3G24513.1  
At3g24515	chr3:008936060	0.0	C/8936060-8936207,8935915-8935984,8935743-8935848,8935538-8935636,8935338-8935448,8934569-8935264	AT3G24515.1  CDS  gene_syn UBC37, ubiquitin-conjugating enzyme 37  gene UBC37  go_process post-translational protein modification|GO:0043687||IEA  go_process regulation of protein metabolic process|GO:0051246||IEA  go_function small conjugating protein ligase activity|GO:0019787||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC37 (ubiquitin-conjugating enzyme 37); small conjugating protein ligase/ ubiquitin-protein ligase  note ubiquitin-conjugating enzyme 37 (UBC37); FUNCTIONS IN: ubiquitin-protein ligase activity, small conjugating protein ligase activity; INVOLVED IN: regulation of protein metabolic process, post-translational protein modification; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC11 (UBIQUITIN-CONJUGATING ENZYME 11); ubiquitin-protein ligase (TAIR:AT3G08690.1); Has 7488 Blast hits to 7480 proteins in 304 species: Archae - 0; Bacteria - 0; Metazoa - 3738; Fungi - 1409; Plants - 1069; Viruses - 22; Other Eukaryotes - 1250 (source: NCBI BLink).  protein_id AT3G24515.1p  transcript_id AT3G24515.1  protein_id AT3G24515.1p  transcript_id AT3G24515.1  
At3g24516	chr3:008937588	0.0	C/8937588-8937776	AT3G24516.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G24516.1p  transcript_id AT3G24516.1  protein_id AT3G24516.1p  transcript_id AT3G24516.1  
At3g24518	chr3:008938260	0.0	C/8938260-8942488	AT3G24518.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT3G24520  product other RNA  transcript_id AT3G24518.2  
At3g24517	chr3:008938552	0.0	C/8938552-8938641,8938106-8938507	AT3G24517.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G05752.1); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G24517.1p  transcript_id AT3G24517.1  protein_id AT3G24517.1p  transcript_id AT3G24517.1  
At3g24518	chr3:008941129	0.0	C/8941129-8942488	AT3G24518.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT3G24520  product other RNA  transcript_id AT3G24518.1  
At3g24520	chr3:008941455	0.0	W/8941455-8941682,8941767-8942531	AT3G24520.1  CDS  gene_syn AT-HSFC1, HEAT SHOCK TRANSCRIPTION FACTOR C1, HSFC1  gene AT-HSFC1  function member of Heat Stress Transcription Factor (Hsf) family  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AT-HSFC1; DNA binding / transcription factor  note AT-HSFC1; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: ATHSFA2; DNA binding / transcription factor (TAIR:AT2G26150.1); Has 1412 Blast hits to 1405 proteins in 164 species: Archae - 0; Bacteria - 2; Metazoa - 319; Fungi - 319; Plants - 457; Viruses - 0; Other Eukaryotes - 315 (source: NCBI BLink).  protein_id AT3G24520.1p  transcript_id AT3G24520.1  protein_id AT3G24520.1p  transcript_id AT3G24520.1  
At3g24530	chr3:008947643	0.0	C/8947643-8947786,8947286-8947396,8947110-8947208,8946912-8947022,8946518-8946821,8946294-8946433,8945678-8946214	AT3G24530.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process protein metabolic process|GO:0019538||ISS  go_function ATPase activity|GO:0016887||ISS  product AAA-type ATPase family protein / ankyrin repeat family protein  note AAA-type ATPase family protein / ankyrin repeat family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), CbxX/CfqX (InterPro:IPR000641), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT4G19150.1); Has 51244 Blast hits to 21153 proteins in 1023 species: Archae - 234; Bacteria - 4272; Metazoa - 26202; Fungi - 3227; Plants - 1610; Viruses - 559; Other Eukaryotes - 15140 (source: NCBI BLink).  protein_id AT3G24530.1p  transcript_id AT3G24530.1  protein_id AT3G24530.1p  transcript_id AT3G24530.1  
At3g24535	chr3:008952006	0.0	W/8952006-8952572	AT3G24535.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 1; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G24535.1p  transcript_id AT3G24535.1  protein_id AT3G24535.1p  transcript_id AT3G24535.1  
At3g24540	chr3:008952903	0.0	W/8952903-8953383,8953482-8953796,8953897-8953983,8954057-8954127,8954248-8954324,8954439-8954586,8954680-8954841,8955312-8955383,8955505-8955621	AT3G24540.1  CDS  gene_syn MOB24.4  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATPERK1 (PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1); ATP binding / protein kinase (TAIR:AT3G24550.1); Has 107178 Blast hits to 95489 proteins in 3503 species: Archae - 92; Bacteria - 9971; Metazoa - 45048; Fungi - 8690; Plants - 24565; Viruses - 1262; Other Eukaryotes - 17550 (source: NCBI BLink).  protein_id AT3G24540.1p  transcript_id AT3G24540.1  protein_id AT3G24540.1p  transcript_id AT3G24540.1  
At3g24542	chr3:008956257	0.0	W/8956257-8957391	AT3G24542.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G24542.1  
At3g24550	chr3:008960411	0.0	W/8960411-8960972,8961146-8961682,8961778-8961864,8961953-8962023,8962094-8962170,8962276-8962423,8962521-8962682,8962989-8963303	AT3G24550.1  CDS  gene_syn ATPERK1, MOB24.11, PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1  gene ATPERK1  function encodes an ortholog of Brassica napus proline extensin-like receptor kinase. Expression of the brassica gene is induced by wounding and fungal infection.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component plasma membrane|GO:0005886|12374299|ISS  go_component plasma membrane|GO:0005886|16618929|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process response to wounding|GO:0009611|12374299|ISS  go_process response to fungus|GO:0009620|12374299|ISS  go_function protein kinase activity|GO:0004672|12374299|ISS  go_function protein kinase activity|GO:0004672||ISS  go_function ATP binding|GO:0005524||ISS  product ATPERK1 (PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1); ATP binding / protein kinase  note PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1 (ATPERK1); FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, response to fungus, response to wounding; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G18470.1); Has 267997 Blast hits to 158013 proteins in 4212 species: Archae - 609; Bacteria - 37859; Metazoa - 112320; Fungi - 33989; Plants - 33964; Viruses - 6157; Other Eukaryotes - 43099 (source: NCBI BLink).  protein_id AT3G24550.1p  transcript_id AT3G24550.1  protein_id AT3G24550.1p  transcript_id AT3G24550.1  
At3g24560	chr3:008963788	0.0	W/8963788-8964049,8964127-8964321,8964395-8964555,8964636-8964812,8964891-8964993,8965071-8965180,8965277-8965366,8965451-8965531,8965606-8966316,8966402-8966494	AT3G24560.2  CDS  gene_syn RASPBERRY 3, RSY3  gene RSY3  function novel gene involved in embryogenesis  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function ligase activity, forming carbon-nitrogen bonds|GO:0016879||IEA  go_component chloroplast|GO:0009507|12068112|ISS  go_process chloroplast organization|GO:0009658|12068112|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|12068112|IMP  go_process suspensor development|GO:0010098|12068112|IMP  product RSY3 (RASPBERRY 3); ATP binding / ligase, forming carbon-nitrogen bonds / nucleotide binding  note RASPBERRY 3 (RSY3); FUNCTIONS IN: nucleotide binding, ligase activity, forming carbon-nitrogen bonds, ATP binding; INVOLVED IN: embryonic development ending in seed dormancy, suspensor development, chloroplast organization; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Lysidine-tRNA(Ile) synthetase, N-terminal (InterPro:IPR012795), PP-loop (InterPro:IPR011063); Has 4731 Blast hits to 4730 proteins in 1385 species: Archae - 4; Bacteria - 2530; Metazoa - 2; Fungi - 67; Plants - 43; Viruses - 0; Other Eukaryotes - 2085 (source: NCBI BLink).  protein_id AT3G24560.2p  transcript_id AT3G24560.2  protein_id AT3G24560.2p  transcript_id AT3G24560.2  
At3g24560	chr3:008964542	0.0	W/8964542-8964555,8964626-8964812,8964891-8964993,8965071-8965180,8965277-8965366,8965451-8965531,8965606-8966316,8966402-8966494	AT3G24560.1  CDS  gene_syn RASPBERRY 3, RSY3  gene RSY3  function novel gene involved in embryogenesis  go_component chloroplast|GO:0009507|12068112|ISS  go_process chloroplast organization|GO:0009658|12068112|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|12068112|IMP  go_process suspensor development|GO:0010098|12068112|IMP  product RSY3 (RASPBERRY 3)  note RASPBERRY 3 (RSY3); INVOLVED IN: embryonic development ending in seed dormancy, suspensor development, chloroplast organization; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PP-loop (InterPro:IPR011063); Has 1123 Blast hits to 1122 proteins in 204 species: Archae - 0; Bacteria - 374; Metazoa - 2; Fungi - 10; Plants - 14; Viruses - 0; Other Eukaryotes - 723 (source: NCBI BLink).  protein_id AT3G24560.1p  transcript_id AT3G24560.1  protein_id AT3G24560.1p  transcript_id AT3G24560.1  
At3g24560	chr3:008964747	0.0	W/8964747-8964812,8964891-8964993,8965071-8965180,8965274-8965531,8965606-8966316,8966402-8966494	AT3G24560.3  CDS  gene_syn RASPBERRY 3, RSY3  gene RSY3  function novel gene involved in embryogenesis  go_component chloroplast|GO:0009507|12068112|ISS  go_process chloroplast organization|GO:0009658|12068112|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|12068112|IMP  go_process suspensor development|GO:0010098|12068112|IMP  product RSY3 (RASPBERRY 3)  note RASPBERRY 3 (RSY3); INVOLVED IN: embryonic development ending in seed dormancy, suspensor development, chloroplast organization; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PP-loop (InterPro:IPR011063); Has 179 Blast hits to 178 proteins in 23 species: Archae - 0; Bacteria - 28; Metazoa - 2; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).  protein_id AT3G24560.3p  transcript_id AT3G24560.3  protein_id AT3G24560.3p  transcript_id AT3G24560.3  
At3g24570	chr3:008968378	0.0	C/8968378-8968530,8967239-8967378,8966675-8967089	AT3G24570.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_component integral to membrane|GO:0016021||IEA  go_component peroxisomal membrane|GO:0005778||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product peroxisomal membrane 22 kDa family protein  note peroxisomal membrane 22 kDa family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, integral to membrane, peroxisomal membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mpv17/PMP22 (InterPro:IPR007248); BEST Arabidopsis thaliana protein match is: peroxisomal membrane 22 kDa family protein (TAIR:AT5G43140.1); Has 898 Blast hits to 898 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 471; Fungi - 216; Plants - 153; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT3G24570.1p  transcript_id AT3G24570.1  protein_id AT3G24570.1p  transcript_id AT3G24570.1  
At3g24580	chr3:008969162	0.0	W/8969162-8970298	AT3G24580.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G19470.2); Has 758 Blast hits to 732 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 756; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G24580.1p  transcript_id AT3G24580.1  protein_id AT3G24580.1p  transcript_id AT3G24580.1  
At3g24590	chr3:008970694	0.0	W/8970694-8971164,8971366-8971503,8971581-8971667,8971742-8971809,8971909-8972020	AT3G24590.1  CDS  gene_syn PLSP1, plastidic type I signal peptidase 1  gene PLSP1  function Encodes a signal peptidase Plsp1 (plastidic type I signal peptidase 1). Required for thylakoid development. Functions in the maturation of the 75-kD component of the translocon at the outer envelope membrane of chloroplasts and oxygen evolving complex subunit 33 (OE33).  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component plastid envelope|GO:0009526|16275749|IDA  go_component chloroplast thylakoid membrane|GO:0009535|16275749|IDA  go_component membrane|GO:0016020||ISS  go_process proteolysis|GO:0006508||ISS  go_process thylakoid membrane organization|GO:0010027|16275749|IMP  go_function peptidase activity|GO:0008233|16275749|IMP  go_function peptidase activity|GO:0008233||ISS  product PLSP1 (plastidic type I signal peptidase 1); peptidase  note plastidic type I signal peptidase 1 (PLSP1); FUNCTIONS IN: peptidase activity; INVOLVED IN: proteolysis, thylakoid membrane organization; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane, plastid envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S24, S26A and S26B, C-terminal (InterPro:IPR011056), Peptidase S24, S26A, S26B and S26C (InterPro:IPR015927), Peptidase S26A, signal peptidase I (InterPro:IPR000223), Peptidase S26A (InterPro:IPR014037); BEST Arabidopsis thaliana protein match is: signal peptidase, putative (TAIR:AT1G06870.1); Has 5850 Blast hits to 5639 proteins in 1276 species: Archae - 0; Bacteria - 3588; Metazoa - 175; Fungi - 62; Plants - 105; Viruses - 0; Other Eukaryotes - 1920 (source: NCBI BLink).  protein_id AT3G24590.1p  transcript_id AT3G24590.1  protein_id AT3G24590.1p  transcript_id AT3G24590.1  
At3g24600	chr3:008974436	0.0	C/8974436-8974867,8973712-8974026,8972563-8973048,8972195-8972482	AT3G24600.1  CDS  go_component membrane|GO:0016020||IEA  go_component MHC class I protein complex|GO:0042612||IEA  go_process antigen processing and presentation|GO:0019882||IEA  product unknown protein  note INVOLVED IN: antigen processing and presentation; LOCATED IN: MHC class I protein complex, membrane; CONTAINS InterPro DOMAIN/s: MHC class I, alpha chain, C-terminal (InterPro:IPR010579), Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35170.1); Has 181 Blast hits to 96 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 181; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G24600.1p  transcript_id AT3G24600.1  protein_id AT3G24600.1p  transcript_id AT3G24600.1  
At3g24610	chr3:008978052	0.0	C/8978052-8978102,8977757-8977843,8977511-8977601,8976878-8976930,8976330-8976605,8975366-8976145	AT3G24610.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Kelch repeat type 1 (InterPro:IPR006652), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14288.1); Has 547 Blast hits to 440 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 33; Fungi - 0; Plants - 514; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G24610.1p  transcript_id AT3G24610.1  protein_id AT3G24610.1p  transcript_id AT3G24610.1  
At3g24612	chr3:008979067	0.0	C/8979067-8979153	AT3G24612.1  snoRNA  gene_syn 60474.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT3G24612.1  
At3g24614	chr3:008979284	0.0	C/8979284-8979423	AT3G24614.1  snoRNA  function Encodes a Z4 snoRNA. Gb: AJ240073  go_component box C/D snoRNP complex|GO:0031428||TAS  go_process rRNA methylation|GO:0031167||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  transcript_id AT3G24614.1  
At3g24615	chr3:008979504	0.0	C/8979504-8979605	AT3G24615.1  snoRNA  function Encodes a Z43 snoRNA. Gb: AJ240080  go_component box C/D snoRNP complex|GO:0031428||TAS  go_process rRNA methylation|GO:0031167||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  transcript_id AT3G24615.1  
At3g24620	chr3:008982541	0.0	C/8982541-8982793,8982350-8982466,8982098-8982252,8981942-8982016,8981588-8981860,8981185-8981505,8980695-8981072	AT3G24620.1  CDS  gene_syn ATROPGEF8, ROPGEF8  gene ROPGEF8  function Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.  go_process biological_process|GO:0008150||ND  go_function Rho guanyl-nucleotide exchange factor activity|GO:0005089|15980860|ISS  product ROPGEF8; Rho guanyl-nucleotide exchange factor  note ROPGEF8; FUNCTIONS IN: Rho guanyl-nucleotide exchange factor activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: ROPGEF9; Rho guanyl-nucleotide exchange factor (TAIR:AT4G13240.1); Has 176 Blast hits to 175 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 174; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G24620.1p  transcript_id AT3G24620.1  protein_id AT3G24620.1p  transcript_id AT3G24620.1  
At3g24630	chr3:008988398	0.0	W/8988398-8989873,8989945-8990077,8990172-8990737	AT3G24630.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; Has 5181 Blast hits to 2786 proteins in 257 species: Archae - 0; Bacteria - 306; Metazoa - 2104; Fungi - 320; Plants - 96; Viruses - 10; Other Eukaryotes - 2345 (source: NCBI BLink).  protein_id AT3G24630.1p  transcript_id AT3G24630.1  protein_id AT3G24630.1p  transcript_id AT3G24630.1  
At3g24640	chr3:008992326	0.0	W/8992326-8992387,8992479-8992539,8992660-8992761	AT3G24640.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function lyase activity|GO:0016829||ISS  product lyase  note lyase; FUNCTIONS IN: lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: late embryogenesis abundant domain-containing protein / LEA domain-containing protein (TAIR:AT4G13230.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G24640.1p  transcript_id AT3G24640.1  protein_id AT3G24640.1p  transcript_id AT3G24640.1  
At3g24650	chr3:008997911	0.0	W/8997911-8999590,8999791-8999883,9000029-9000129,9000263-9000309,9000427-9000503,9000616-9000780	AT3G24650.1  CDS  gene_syn ABA INSENSITIVE 3, ABI3, SIS10, SUGAR INSENSITIVE 10  gene ABI3  function Homologous to the maize transcription factor Viviparous-1. Full length ABI3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)], present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of ABI3 requires the B3 DNA-binding domain and an activation domain. In addition to the known N-terminal-located activation domain, a second transcription activation domain was found in the B1 region of ABI3. ABI3 is essential for seed maturation. Regulator of the transition between embryo maturation and early seedling development. Putative seed-specific transcriptional activator. Mutants exhibit decreased responsiveness to ABA suggesting that ABI3 protein participates in the ABA perception/transduction cascade. Based on double mutant analyses, ABI3 interacts genetically with both FUS3 and LEC1 and is involved in controlling accumulation of chlorophyll and anthocyanins, sensitivity to abscisic acid, and expression of the members of the 12S storage protein gene family. In addition, both FUS3 and LEC1 regulate positively the abundance of the ABI3 protein in the seed.  go_process regulation of transcription, DNA-dependent|GO:0006355|11019812|TAS  go_process response to heat|GO:0009408|10759505|IMP  go_process plastid organization|GO:0009657|10634906|IMP  go_process response to auxin stimulus|GO:0009733|12662310|IMP  go_process response to abscisic acid stimulus|GO:0009737|8055176|IMP  go_process embryonic development|GO:0009790|10753527|IEP  go_function DNA binding|GO:0003677|14767767|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11019812|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|1359917|ISS  go_function transcription activator activity|GO:0016563|1359917|ISS  go_function transcription activator activity|GO:0016563|16463099|IDA  go_function transcription activator activity|GO:0016563||ISS  go_function basal transcription repressor activity|GO:0017163|10753527|IEP  product ABI3 (ABA INSENSITIVE 3); DNA binding / basal transcription repressor/ transcription activator/ transcription factor  note ABA INSENSITIVE 3 (ABI3); FUNCTIONS IN: basal transcription repressor activity, transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: in 6 processes; EXPRESSED IN: lateral root, embryo, seed coat; EXPRESSED DURING: dry seed stage, seed maturation stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: FUS3 (FUSCA 3); DNA binding / transcription activator/ transcription factor (TAIR:AT3G26790.1); Has 4627 Blast hits to 2362 proteins in 250 species: Archae - 0; Bacteria - 117; Metazoa - 1432; Fungi - 353; Plants - 843; Viruses - 101; Other Eukaryotes - 1781 (source: NCBI BLink).  protein_id AT3G24650.1p  transcript_id AT3G24650.1  protein_id AT3G24650.1p  transcript_id AT3G24650.1  
At3g24660	chr3:009003641	0.0	W/9003641-9005021,9005108-9005751	AT3G24660.1  CDS  gene_syn TMKL1, transmembrane kinase-like 1  gene TMKL1  function member of Receptor kinase-like protein family  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product TMKL1 (transmembrane kinase-like 1); ATP binding / kinase/ protein serine/threonine kinase  note transmembrane kinase-like 1 (TMKL1); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: IMK2 (INFLORESCENCE MERISTEM RECEPTOR-LIKE KINASE 2); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT3G51740.1); Has 67239 Blast hits to 49750 proteins in 1719 species: Archae - 41; Bacteria - 4385; Metazoa - 19132; Fungi - 2632; Plants - 33001; Viruses - 183; Other Eukaryotes - 7865 (source: NCBI BLink).  protein_id AT3G24660.1p  transcript_id AT3G24660.1  protein_id AT3G24660.1p  transcript_id AT3G24660.1  
At3g24670	chr3:009008722	0.0	C/9008722-9008801,9008573-9008632,9008389-9008463,9006997-9007639,9006726-9006829,9006504-9006642,9006205-9006426	AT3G24670.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function pectate lyase activity|GO:0030570||ISS  product pectate lyase family protein  note pectate lyase family protein; FUNCTIONS IN: pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: lyase/ pectate lyase (TAIR:AT4G13210.1); Has 918 Blast hits to 913 proteins in 160 species: Archae - 0; Bacteria - 378; Metazoa - 0; Fungi - 131; Plants - 401; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT3G24670.1p  transcript_id AT3G24670.1  protein_id AT3G24670.1p  transcript_id AT3G24670.1  
At3g24675	chr3:009011349	0.0	C/9011349-9015500	AT3G24675.1  mRNA_TE_gene  pseudo  gene_syn MSD24.5  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.4e-31 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)  
At3g24680	chr3:009015500	0.0	C/9015500-9016963	AT3G24680.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to zinc finger protein, putative [Arabidopsis thaliana] (TAIR:AT2G15520.1); similar to 80C09_29 [Brassica rapa subsp. pekinensis] (GB:AAZ41840.1)  
At3g24690	chr3:009020738	0.0	W/9020738-9021007,9021084-9021290	AT3G24690.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT1G27090.1); Has 28 Blast hits to 27 proteins in 8 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G24690.1p  transcript_id AT3G24690.1  protein_id AT3G24690.1p  transcript_id AT3G24690.1  
At3g24700	chr3:009022281	0.0	W/9022281-9023030	AT3G24700.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G17265.1); Has 738 Blast hits to 724 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 738; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G24700.1p  transcript_id AT3G24700.1  protein_id AT3G24700.1p  transcript_id AT3G24700.1  
At3g24710	chr3:009024192	0.0	C/9024192-9024367,9023960-9024164	AT3G24710.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: flavodoxin family protein (TAIR:AT3G02280.1); Has 90 Blast hits to 90 proteins in 15 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G24710.1p  transcript_id AT3G24710.1  protein_id AT3G24710.1p  transcript_id AT3G24710.1  
At3g24715	chr3:009025849	0.0	W/9025849-9028074,9028155-9028328,9028408-9028494,9028631-9028783,9028907-9029070,9029156-9029303,9029394-9029516,9029589-9029676,9029758-9029948	AT3G24715.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  product ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G04700.1); Has 83470 Blast hits to 82444 proteins in 3326 species: Archae - 47; Bacteria - 6705; Metazoa - 38081; Fungi - 6395; Plants - 17698; Viruses - 396; Other Eukaryotes - 14148 (source: NCBI BLink).  protein_id AT3G24715.1p  transcript_id AT3G24715.1  protein_id AT3G24715.1p  transcript_id AT3G24715.1  
At3g24730	chr3:009030739	0.0	C/9030739-9030894,9030497-9030654,9030346-9030412,9030152-9030250	AT3G24730.1  CDS  go_component spliceosome|GO:0005681||IEA  go_process mitosis|GO:0007067||IEA  go_component spliceosome|GO:0005681||ISS  go_process mitosis|GO:0007067||ISS  go_function catalytic activity|GO:0003824||ISS  product catalytic  note catalytic; FUNCTIONS IN: catalytic activity; INVOLVED IN: mitosis; LOCATED IN: spliceosome; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), mRNA splicing factor, thioredoxin-like U5 snRNP (InterPro:IPR004123), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: YLS8; catalytic (TAIR:AT5G08290.1); Has 375 Blast hits to 375 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 170; Fungi - 94; Plants - 61; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT3G24730.1p  transcript_id AT3G24730.1  protein_id AT3G24730.1p  transcript_id AT3G24730.1  
At3g24740	chr3:009032397	0.0	W/9032397-9033461	AT3G24740.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT3G25910.1); Has 135 Blast hits to 134 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G24740.1p  transcript_id AT3G24740.1  protein_id AT3G24740.1p  transcript_id AT3G24740.1  
At3g24740	chr3:009032397	0.0	W/9032397-9033461	AT3G24740.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT3G25910.1); Has 135 Blast hits to 134 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G24740.2p  transcript_id AT3G24740.2  protein_id AT3G24740.2p  transcript_id AT3G24740.2  
At3g24750	chr3:009036735	0.0	W/9036735-9036962,9037056-9037311,9037539-9037564	AT3G24750.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; Has 16 Blast hits to 16 proteins in 7 species: Archae - 0; Bacteria - 6; Metazoa - 2; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G24750.1p  transcript_id AT3G24750.1  protein_id AT3G24750.1p  transcript_id AT3G24750.1  
At3g24760	chr3:009040108	0.0	W/9040108-9041259	AT3G24760.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT1G23390.1); Has 135 Blast hits to 135 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G24760.1p  transcript_id AT3G24760.1  protein_id AT3G24760.1p  transcript_id AT3G24760.1  
At3g24770	chr3:009046779	0.0	W/9046779-9047078	AT3G24770.1  CDS  gene_syn CLAVATA3/ESR-RELATED 41, CLE41  gene CLE41  function Belongs to a large gene family, called CLE for CLAVATA3/ESR-related, encoding small peptides with conserved carboxyl termini. The C-terminal 12 amino acid sequence of CLE41 is identical to that of a dodeca peptide (TDIF, tracheary element differentiation inhibitory factor) isolated from Arabidopsis and functions as a suppressor of plant stem cell differentiation. TDIF sequence is also identical to the C-terminal 12 amino acids of CLE44 (At4g13195).  go_component apoplast|GO:0048046|11457943|RCA  go_process signal transduction|GO:0007165||ISS  go_process phloem or xylem histogenesis|GO:0010087|16902140|IDA  go_function receptor binding|GO:0005102||ISS  go_function protein binding|GO:0005515|11457943|ISS  product CLE41 (CLAVATA3/ESR-RELATED 41); protein binding / receptor binding  note CLAVATA3/ESR-RELATED 41 (CLE41); FUNCTIONS IN: protein binding, receptor binding; INVOLVED IN: phloem or xylem histogenesis, signal transduction; LOCATED IN: apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: CLE44 (CLAVATA3/ESR-RELATED 44) (TAIR:AT4G13195.1); Has 15 Blast hits to 15 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G24770.1p  transcript_id AT3G24770.1  protein_id AT3G24770.1p  transcript_id AT3G24770.1  
At3g24780	chr3:009049446	0.0	W/9049446-9051593	AT3G24780.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterized conserved protein UCP015417, vWA (InterPro:IPR011205), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13210.1); Has 276 Blast hits to 231 proteins in 34 species: Archae - 0; Bacteria - 26; Metazoa - 5; Fungi - 23; Plants - 46; Viruses - 15; Other Eukaryotes - 161 (source: NCBI BLink).  protein_id AT3G24780.1p  transcript_id AT3G24780.1  protein_id AT3G24780.1p  transcript_id AT3G24780.1  
At3g24790	chr3:009052996	0.0	W/9052996-9053029,9053144-9053322,9053478-9053667,9053759-9054150,9054235-9054531	AT3G24790.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note ATP binding / kinase/ protein kinase/ protein serine/threonine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G07070.1); Has 83053 Blast hits to 81961 proteins in 3002 species: Archae - 50; Bacteria - 7147; Metazoa - 36903; Fungi - 6463; Plants - 18621; Viruses - 291; Other Eukaryotes - 13578 (source: NCBI BLink).  protein_id AT3G24790.1p  transcript_id AT3G24790.1  protein_id AT3G24790.1p  transcript_id AT3G24790.1  
At3g24800	chr3:009055653	0.0	W/9055653-9055741,9056085-9056113,9056201-9056380,9056467-9056556,9056629-9056868,9056951-9057148,9057302-9057420,9057508-9057795	AT3G24800.1  CDS  gene_syn PROTEOLYSIS 1, PRT1  gene PRT1  function Contains two ring finger domains and one ZZ domain. Week similarity to yeast Rad18p. Putative component of the N-end rule pathway (ubiquitin-dependent proteolysis).  go_component ubiquitin ligase complex|GO:0000151|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|9653113|TAS  go_function ubiquitin-protein ligase activity|GO:0004842|11019805|TAS  product PRT1 (PROTEOLYSIS 1); ubiquitin-protein ligase  note PROTEOLYSIS 1 (PRT1); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, ZZ-type (InterPro:IPR000433); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G18660.4); Has 3395 Blast hits to 2744 proteins in 211 species: Archae - 0; Bacteria - 0; Metazoa - 2572; Fungi - 223; Plants - 266; Viruses - 3; Other Eukaryotes - 331 (source: NCBI BLink).  protein_id AT3G24800.1p  transcript_id AT3G24800.1  protein_id AT3G24800.1p  transcript_id AT3G24800.1  
At3g24810	chr3:009060990	0.0	W/9060990-9061396,9061496-9061588,9061673-9061742	AT3G24810.1  CDS  gene_syn ICK3, KIP-RELATED PROTEIN 5, KRP5, kip-related protein 5  gene ICK3  function Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization.  go_component nucleus|GO:0005634||IEA  go_function cyclin-dependent protein kinase inhibitor activity|GO:0004861||IEA  go_component nucleus|GO:0005634||ISS  go_process cell cycle arrest|GO:0007050||ISS  go_process negative regulation of cyclin-dependent protein kinase activity|GO:0045736|16376885|IDA  go_function cyclin-dependent protein kinase inhibitor activity|GO:0004861||ISS  product ICK3; cyclin-dependent protein kinase inhibitor  note ICK3; FUNCTIONS IN: cyclin-dependent protein kinase inhibitor activity; INVOLVED IN: negative regulation of cyclin-dependent protein kinase activity, cell cycle arrest; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-dependent kinase inhibitor (InterPro:IPR003175), Cyclin-dependent kinase inhibitor, plant (InterPro:IPR016701); BEST Arabidopsis thaliana protein match is: ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE); cyclin binding / cyclin-dependent protein kinase inhibitor (TAIR:AT5G48820.1); Has 119 Blast hits to 119 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 119; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G24810.1p  transcript_id AT3G24810.1  protein_id AT3G24810.1p  transcript_id AT3G24810.1  
At3g24820	chr3:009064177	0.0	C/9064177-9064366,9063948-9064078,9063082-9063179,9062717-9062858	AT3G24820.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product BSD domain-containing protein  note BSD domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69030.1); Has 97 Blast hits to 97 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G24820.1p  transcript_id AT3G24820.1  protein_id AT3G24820.1p  transcript_id AT3G24820.1  
At3g24830	chr3:009064613	0.0	W/9064613-9064884,9065165-9065281,9065377-9065464,9065728-9065871	AT3G24830.1  CDS  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L13A (RPL13aB)  note 60S ribosomal protein L13A (RPL13aB); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13 (InterPro:IPR005822), Ribosomal protein L13, eukaryotic/archaeal (InterPro:IPR005755); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L13A (RPL13aA) (TAIR:AT3G07110.1); Has 1473 Blast hits to 1473 proteins in 438 species: Archae - 212; Bacteria - 283; Metazoa - 292; Fungi - 127; Plants - 164; Viruses - 0; Other Eukaryotes - 395 (source: NCBI BLink).  protein_id AT3G24830.1p  transcript_id AT3G24830.1  protein_id AT3G24830.1p  transcript_id AT3G24830.1  
At3g24840	chr3:009067301	0.0	W/9067301-9067307,9067396-9067705,9067785-9067884,9068040-9068306,9068402-9068479,9068568-9068669,9068757-9068806,9068906-9069005,9069100-9069186,9069273-9069341,9069431-9069503,9069585-9069952,9070038-9070112,9070203-9070256	AT3G24840.1  CDS  go_component intracellular|GO:0005622||IEA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||IEA  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative  note SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: intracellular; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative (TAIR:AT4G39170.1); Has 1796 Blast hits to 1790 proteins in 173 species: Archae - 0; Bacteria - 0; Metazoa - 679; Fungi - 347; Plants - 450; Viruses - 0; Other Eukaryotes - 320 (source: NCBI BLink).  protein_id AT3G24840.1p  transcript_id AT3G24840.1  protein_id AT3G24840.1p  transcript_id AT3G24840.1  
At3g24850	chr3:009071105	0.0	W/9071105-9072184	AT3G24850.1  CDS  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508), Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT5G24050.1); Has 65 Blast hits to 64 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G24850.1p  transcript_id AT3G24850.1  protein_id AT3G24850.1p  transcript_id AT3G24850.1  
At3g24860	chr3:009073642	0.0	W/9073642-9074574	AT3G24860.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function transcription factor activity|GO:0003700|11118137|ISS  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT2G44730.1); Has 700 Blast hits to 557 proteins in 131 species: Archae - 0; Bacteria - 29; Metazoa - 100; Fungi - 40; Plants - 346; Viruses - 61; Other Eukaryotes - 124 (source: NCBI BLink).  protein_id AT3G24860.1p  transcript_id AT3G24860.1  protein_id AT3G24860.1p  transcript_id AT3G24860.1  
At3g24870	chr3:009084139	0.0	C/9084139-9084278,9083976-9084075,9083785-9083882,9082346-9083708,9082118-9082237,9081706-9081909,9081200-9081388,9081023-9081103,9080849-9080906,9080257-9080774,9080104-9080157,9079734-9079779,9079316-9079512,9079184-9079237,9079019-9079099,9078673-9078810,9078471-9078587,9077796-9077896,9077516-9077710,9077022-9077400,9075237-9076772	AT3G24870.1  CDS  go_component apoplast|GO:0048046|18538804|IDA  go_function DNA binding|GO:0003677||IEA  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; LOCATED IN: apoplast; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: HSA (InterPro:IPR006562), SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), HAS subgroup (InterPro:IPR013999), Helicase/SANT-associated, DNA binding (InterPro:IPR014012), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT3G24880.1); Has 12195 Blast hits to 8492 proteins in 384 species: Archae - 4; Bacteria - 324; Metazoa - 5744; Fungi - 1803; Plants - 1188; Viruses - 30; Other Eukaryotes - 3102 (source: NCBI BLink).  protein_id AT3G24870.1p  transcript_id AT3G24870.1  protein_id AT3G24870.1p  transcript_id AT3G24870.1  
At3g24880	chr3:009095398	0.0	C/9095398-9095537,9095235-9095289,9095044-9095141,9093605-9094967,9093377-9093496,9092965-9093168,9092428-9092616,9092251-9092331,9092077-9092134,9091485-9092002,9091331-9091384,9090957-9091002,9090539-9090735,9090407-9090460,9090242-9090322,9089899-9090036,9089696-9089812,9089388-9089454,9089222-9089298,9089024-9089124,9088744-9088938,9088250-9088628,9086457-9087998	AT3G24880.1  CDS  go_function DNA binding|GO:0003677||IEA  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: HSA (InterPro:IPR006562), SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), HAS subgroup (InterPro:IPR013999), Helicase/SANT-associated, DNA binding (InterPro:IPR014012), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT3G24870.1); Has 15740 Blast hits to 10745 proteins in 438 species: Archae - 4; Bacteria - 401; Metazoa - 7721; Fungi - 2365; Plants - 1543; Viruses - 52; Other Eukaryotes - 3654 (source: NCBI BLink).  protein_id AT3G24880.1p  transcript_id AT3G24880.1  protein_id AT3G24880.1p  transcript_id AT3G24880.1  
At3g24890	chr3:009098179	0.0	W/9098179-9098334,9098466-9098515,9098616-9098634	AT3G24890.1  CDS  gene_syn ATVAMP728, VAMP728, VESICLE-ASSOCIATED MEMBRANE PROTEIN 728  gene ATVAMP728  function member of VAMP72 Gene Family  go_component integral to membrane|GO:0016021||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_component membrane|GO:0016020||ISS  go_function molecular_function|GO:0003674||ND  product ATVAMP728  note ATVAMP728; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: ATVAMP725 (TAIR:AT2G32670.1); Has 260 Blast hits to 259 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 8; Plants - 204; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT3G24890.1p  transcript_id AT3G24890.1  protein_id AT3G24890.1p  transcript_id AT3G24890.1  
At3g24900	chr3:009099183	0.0	C/9099183-9101837	AT3G24900.1  CDS  gene_syn AtRLP39, Receptor Like Protein 39  gene AtRLP39  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product AtRLP39 (Receptor Like Protein 39); protein binding  note Receptor Like Protein 39 (AtRLP39); FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP41 (Receptor Like Protein 41); kinase/ protein binding (TAIR:AT3G25010.1); Has 63801 Blast hits to 18576 proteins in 784 species: Archae - 41; Bacteria - 3769; Metazoa - 18480; Fungi - 799; Plants - 35670; Viruses - 14; Other Eukaryotes - 5028 (source: NCBI BLink).  protein_id AT3G24900.1p  transcript_id AT3G24900.1  protein_id AT3G24900.1p  transcript_id AT3G24900.1  
At3g24927	chr3:009103087	0.0	W/9103087-9103989	AT3G24927.1  pseudogenic_transcript  pseudo  gene_syn K7P8.20  function pseudogene of unknown protein  note expressed protein  
At3g24929	chr3:009104495	0.0	W/9104495-9104652,9104846-9105092,9105434-9105519,9105606-9105648	AT3G24929.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT3G24929.1p  transcript_id AT3G24929.1  protein_id AT3G24929.1p  transcript_id AT3G24929.1  
At3g24982	chr3:009106914	0.0	C/9106914-9108937,9106157-9106880	AT3G24982.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: stem, sepal, stamen, leaf; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP42 (Receptor Like Protein 42); protein binding (TAIR:AT3G25020.1); Has 63465 Blast hits to 18926 proteins in 758 species: Archae - 39; Bacteria - 3666; Metazoa - 18521; Fungi - 747; Plants - 35612; Viruses - 31; Other Eukaryotes - 4849 (source: NCBI BLink).  protein_id AT3G24982.1p  transcript_id AT3G24982.1  protein_id AT3G24982.1p  transcript_id AT3G24982.1  
At3g25010	chr3:009110103	0.0	C/9110103-9112748	AT3G25010.1  CDS  gene_syn AtRLP41, Receptor Like Protein 41  gene AtRLP41  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  go_function kinase activity|GO:0016301||ISS  product AtRLP41 (Receptor Like Protein 41); kinase/ protein binding  note Receptor Like Protein 41 (AtRLP41); FUNCTIONS IN: protein binding, kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP42 (Receptor Like Protein 42); protein binding (TAIR:AT3G25020.1); Has 63637 Blast hits to 18517 proteins in 772 species: Archae - 52; Bacteria - 3872; Metazoa - 18479; Fungi - 857; Plants - 35380; Viruses - 32; Other Eukaryotes - 4965 (source: NCBI BLink).  protein_id AT3G25010.1p  transcript_id AT3G25010.1  protein_id AT3G25010.1p  transcript_id AT3G25010.1  
At3g25011	chr3:009113168	0.0	C/9113168-9113281	AT3G25011.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G25011.1p  transcript_id AT3G25011.1  protein_id AT3G25011.1p  transcript_id AT3G25011.1  
At3g25013	chr3:009114071	0.0	W/9114071-9114097,9114360-9114388,9114469-9114508,9114840-9114903,9115003-9115178,9115527-9115670	AT3G25013.1  CDS  go_component integral to membrane|GO:0016021||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: ATVAMP725 (TAIR:AT2G32670.1).  protein_id AT3G25013.1p  transcript_id AT3G25013.1  protein_id AT3G25013.1p  transcript_id AT3G25013.1  
At3g25014	chr3:009114546	0.0	C/9114546-9114707	AT3G25014.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G25014.1p  transcript_id AT3G25014.1  protein_id AT3G25014.1p  transcript_id AT3G25014.1  
At3g25020	chr3:009116868	0.0	C/9116868-9119540	AT3G25020.1  CDS  gene_syn AtRLP42, Receptor Like Protein 42  gene AtRLP42  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product AtRLP42 (Receptor Like Protein 42); protein binding  note Receptor Like Protein 42 (AtRLP42); FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: protein binding (TAIR:AT3G24982.1); Has 64689 Blast hits to 19124 proteins in 780 species: Archae - 40; Bacteria - 4159; Metazoa - 19760; Fungi - 828; Plants - 34863; Viruses - 32; Other Eukaryotes - 5007 (source: NCBI BLink).  protein_id AT3G25020.1p  transcript_id AT3G25020.1  protein_id AT3G25020.1p  transcript_id AT3G25020.1  
At3g25030	chr3:009122650	0.0	W/9122650-9123402	AT3G25030.1  CDS  go_function protein binding|GO:0005515||ISS  go_function calmodulin binding|GO:0005516|11782485|IEP  go_function calmodulin binding|GO:0005516|11782485|TAS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, calmodulin binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G13100.3); Has 624 Blast hits to 618 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 360; Fungi - 45; Plants - 107; Viruses - 10; Other Eukaryotes - 102 (source: NCBI BLink).  protein_id AT3G25030.1p  transcript_id AT3G25030.1  protein_id AT3G25030.1p  transcript_id AT3G25030.1  
At3g25030	chr3:009122650	0.0	W/9122650-9123402	AT3G25030.2  CDS  go_function protein binding|GO:0005515||ISS  go_function calmodulin binding|GO:0005516|11782485|IEP  go_function calmodulin binding|GO:0005516|11782485|TAS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, calmodulin binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G13100.3); Has 624 Blast hits to 618 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 360; Fungi - 45; Plants - 107; Viruses - 10; Other Eukaryotes - 102 (source: NCBI BLink).  protein_id AT3G25030.2p  transcript_id AT3G25030.2  protein_id AT3G25030.2p  transcript_id AT3G25030.2  
At3g25040	chr3:009124479	0.0	W/9124479-9124569,9124898-9125163,9125271-9125386,9125549-9125622,9125865-9125928,9126015-9126051	AT3G25040.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process protein retention in ER lumen|GO:0006621||IEA  go_function ER retention sequence binding|GO:0046923||IEA  go_component integral to membrane|GO:0016021||ISS  go_process protein transport|GO:0015031||ISS  go_function receptor activity|GO:0004872||ISS  product ER lumen protein retaining receptor, putative / HDEL receptor, putative  note ER lumen protein retaining receptor, putative / HDEL receptor, putative; FUNCTIONS IN: ER retention sequence binding, receptor activity; INVOLVED IN: protein retention in ER lumen, protein transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ER lumen protein retaining receptor (InterPro:IPR000133); BEST Arabidopsis thaliana protein match is: ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2); KDEL sequence binding / receptor (TAIR:AT1G29330.1); Has 642 Blast hits to 641 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 271; Fungi - 121; Plants - 119; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).  protein_id AT3G25040.1p  transcript_id AT3G25040.1  protein_id AT3G25040.1p  transcript_id AT3G25040.1  
At3g25050	chr3:009126872	0.0	W/9126872-9127067,9127156-9127256,9127343-9127536,9127837-9128218	AT3G25050.1  CDS  gene_syn XTH3, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3  gene XTH3  function encodes a xyloglucan endotransglucosylase/hydrolase. Higher expression in flowers and in response to IAA treatment.  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process plant-type cell wall biogenesis|GO:0009832|11673616|ISS  go_process photoperiodism, flowering|GO:0048573|18799658|IMP  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762|11673616|ISS  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product XTH3 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3); hydrolase, acting on glycosyl bonds / xyloglucan:xyloglucosyl transferase  note XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3 (XTH3); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: photoperiodism, flowering, plant-type cell wall biogenesis; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16, active site (InterPro:IPR008263), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative (TAIR:AT4G13090.1); Has 1366 Blast hits to 1358 proteins in 216 species: Archae - 0; Bacteria - 211; Metazoa - 0; Fungi - 287; Plants - 796; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT3G25050.1p  transcript_id AT3G25050.1  protein_id AT3G25050.1p  transcript_id AT3G25050.1  
At3g25060	chr3:009128516	0.0	W/9128516-9130321	AT3G25060.1  CDS  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G29760.1); Has 13181 Blast hits to 4840 proteins in 138 species: Archae - 0; Bacteria - 2; Metazoa - 32; Fungi - 63; Plants - 12849; Viruses - 0; Other Eukaryotes - 235 (source: NCBI BLink).  protein_id AT3G25060.1p  transcript_id AT3G25060.1  protein_id AT3G25060.1p  transcript_id AT3G25060.1  
At3g25070	chr3:009132458	0.0	W/9132458-9132463,9132936-9133352,9133431-9133613,9133718-9133747	AT3G25070.1  CDS  gene_syn RIN4, RPM1 INTERACTING PROTEIN 4  gene RIN4  function Encodes a member of the R protein complex and may represent a virulence target of type III pili effector proteins (virulence factors) from bacterial pathogens, which is  guarded  by R protein complex (RPM1 and RPS2 proteins). RIN4 physically interacts with RPS2 and RPM1 in vivo. Bacterial avirulence (Avr) effectors AvrB, AvrRpm1, and AvrRpt2 induce a mobility shift in RIN4 and expression of AvrRpt2 induces rapid degradation of RIN4. RIN4 contains 2 sites for AvrRpt2 autocleavage, called RCS1 and RCS2. Overexpression of RIN4 inhibits multiple phenotypes associated with AvrRpt2 function and also inhibits PAMP-induced defense signaling. Attached to the plasma membrane at its carboxyl terminus. Cleaved by AvrRpt2 at two PxFGxW motifs, one releasing a large portion of RIN4 from the plasma membrane and both exposing amino-terminal residues that destabilized the carboxyl-terminal cleavage products by targeting them for N-end ubiquitylation and proteasomal degradation.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|15845764|TAS  go_component membrane|GO:0016020|11955429|IDA  go_component membrane|GO:0016020|15845764|IDA  go_process response to molecule of bacterial origin|GO:0002237|15935761|IMP  go_process protein amino acid phosphorylation|GO:0006468|11955429|IDA  go_process plant-type hypersensitive response|GO:0009626|12581527|IMP  go_process defense response to bacterium, incompatible interaction|GO:0009816||IMP  go_process defense response signaling pathway, resistance gene-independent|GO:0010204|15935761|IMP  go_function protein binding|GO:0005515|11955429|IPI  go_function protein binding|GO:0005515|12581526|IPI  go_function protein binding|GO:0005515|17012600|IPI  product RIN4 (RPM1 INTERACTING PROTEIN 4); protein binding  note RPM1 INTERACTING PROTEIN 4 (RIN4); FUNCTIONS IN: protein binding; INVOLVED IN: defense response signaling pathway, resistance gene-independent, defense response to bacterium, incompatible interaction, protein amino acid phosphorylation, response to molecule of bacterial origin, plant-type hypersensitive response; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Defence response, Rin4 (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: nitrate-responsive NOI protein, putative (TAIR:AT5G40645.1); Has 221 Blast hits to 216 proteins in 29 species: Archae - 0; Bacteria - 8; Metazoa - 17; Fungi - 2; Plants - 178; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT3G25070.1p  transcript_id AT3G25070.1  protein_id AT3G25070.1p  transcript_id AT3G25070.1  
At3g25080	chr3:009137105	0.0	W/9137105-9137213,9137396-9137484,9137575-9137892	AT3G25080.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57210.1); Has 57 Blast hits to 56 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G25080.1p  transcript_id AT3G25080.1  protein_id AT3G25080.1p  transcript_id AT3G25080.1  
At3g25090	chr3:009140512	0.0	C/9140512-9141094,9140039-9140433	AT3G25090.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G23685.1); Has 452 Blast hits to 433 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 452; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G25090.1p  transcript_id AT3G25090.1  protein_id AT3G25090.1p  transcript_id AT3G25090.1  
At3g25099	chr3:009143783	0.0	C/9143783-9143890	AT3G25099.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G25099.1p  transcript_id AT3G25099.1  protein_id AT3G25099.1p  transcript_id AT3G25099.1  
At3g25100	chr3:009144292	0.0	W/9144292-9146082	AT3G25100.1  CDS  gene_syn CDC45, cell division cycle 45  gene CDC45  function Required for normal meiosis, may act in the last round of DNA replication prior to meiosis, sequence similar to yeast CDC45  go_component cellular_component|GO:0005575||ND  go_process premeiotic DNA synthesis|GO:0006279|14660803|IMP  go_process gametophyte development|GO:0048229|14660803|IMP  go_function molecular_function|GO:0003674||ND  product CDC45 (cell division cycle 45)  note cell division cycle 45 (CDC45); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: gametophyte development, premeiotic DNA synthesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CDC45-like protein (InterPro:IPR003874); Has 1664 Blast hits to 1510 proteins in 194 species: Archae - 0; Bacteria - 21; Metazoa - 647; Fungi - 378; Plants - 135; Viruses - 37; Other Eukaryotes - 446 (source: NCBI BLink).  protein_id AT3G25100.1p  transcript_id AT3G25100.1  protein_id AT3G25100.1p  transcript_id AT3G25100.1  
At3g25110	chr3:009147941	0.0	C/9147941-9148273,9147707-9147840,9147489-9147602,9147249-9147344,9147083-9147170,9146930-9146998,9146589-9146843	AT3G25110.1  CDS  gene_syn Arabidopsis FatA acyl-ACP thioesterase, AtFaTA  gene AtFaTA  function Encodes a FatA acyl-ACP thioesterase  go_process fatty acid biosynthetic process|GO:0006633||IEA  go_process fatty acid biosynthetic process|GO:0006633||ISS  go_function acyl carrier activity|GO:0000036||ISS  go_function acyl-[acyl-carrier-protein] hydrolase activity|GO:0016297|12061798|IDA  product AtFaTA (Arabidopsis FatA acyl-ACP thioesterase); acyl carrier/ acyl-[acyl-carrier-protein] hydrolase  note Arabidopsis FatA acyl-ACP thioesterase (AtFaTA); FUNCTIONS IN: acyl-[acyl-carrier-protein] hydrolase activity, acyl carrier activity; INVOLVED IN: fatty acid biosynthetic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acyl-ACP thioesterase (InterPro:IPR002864); BEST Arabidopsis thaliana protein match is: acyl-(acyl carrier protein) thioesterase, putative / acyl-ACP thioesterase, putative / oleoyl-(acyl-carrier protein) hydrolase, putative / S-acyl fatty acid synthase thioesterase, putative (TAIR:AT4G13050.1); Has 654 Blast hits to 654 proteins in 248 species: Archae - 0; Bacteria - 435; Metazoa - 2; Fungi - 0; Plants - 209; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT3G25110.1p  transcript_id AT3G25110.1  protein_id AT3G25110.1p  transcript_id AT3G25110.1  
At3g25120	chr3:009150948	0.0	C/9150948-9151068,9150483-9150590,9150255-9150359,9149785-9150020	AT3G25120.1  CDS  go_component mitochondrial inner membrane|GO:0005743||IEA  go_process protein transport|GO:0015031||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744||ISS  go_process protein transport|GO:0015031||ISS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein  note mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein; FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: mitochondrial inner membrane, mitochondrial inner membrane presequence translocase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial import inner membrane translocase, subunit Tim17/22 (InterPro:IPR003397); Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 16; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G25120.1p  transcript_id AT3G25120.1  protein_id AT3G25120.1p  transcript_id AT3G25120.1  
At3g25130	chr3:009152434	0.0	W/9152434-9153654	AT3G25130.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 3823 Blast hits to 2495 proteins in 214 species: Archae - 10; Bacteria - 149; Metazoa - 1048; Fungi - 191; Plants - 116; Viruses - 12; Other Eukaryotes - 2297 (source: NCBI BLink).  protein_id AT3G25130.1p  transcript_id AT3G25130.1  protein_id AT3G25130.1p  transcript_id AT3G25130.1  
At3g25140	chr3:009154748	0.0	W/9154748-9154909,9155034-9156275,9156367-9156642	AT3G25140.1  CDS  gene_syn GALACTURONOSYLTRANSFERASE 8, GAUT8, QUA1, QUASIMODO 1  gene QUA1  function Quasimodo1, encodes a glycosyltransferase, involved in homogalacturonan biosynthesis; mutant shows cell adhesion defect and lower wall uronic acid content.  go_component mitochondrion|GO:0005739|15276431|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process homogalacturonan biosynthetic process|GO:0010289|12368506|IMP  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_process pectin biosynthetic process|GO:0045489|12368506|IMP  go_function transferase activity, transferring glycosyl groups|GO:0016757|12368506|ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS  product QUA1 (QUASIMODO 1); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note QUASIMODO 1 (QUA1); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: pectin biosynthetic process, carbohydrate biosynthetic process, homogalacturonan biosynthetic process; LOCATED IN: mitochondrion, Golgi apparatus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: GAUT9 (Galacturonosyltransferase 9); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT3G02350.1); Has 722 Blast hits to 721 proteins in 106 species: Archae - 0; Bacteria - 152; Metazoa - 125; Fungi - 0; Plants - 431; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT3G25140.1p  transcript_id AT3G25140.1  protein_id AT3G25140.1p  transcript_id AT3G25140.1  
At3g25150	chr3:009159309	0.0	C/9159309-9159362,9159085-9159222,9158712-9159000,9158329-9158594,9158042-9158219,9157837-9157958,9157688-9157747,9157541-9157604,9157161-9157456	AT3G25150.1  CDS  go_component intracellular|GO:0005622||IEA  go_process transport|GO:0006810||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process nucleocytoplasmic transport|GO:0006913||ISS  go_function RNA binding|GO:0003723||ISS  product nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein  note nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: transport, nucleocytoplasmic transport; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT5G60980.2); Has 8831 Blast hits to 5958 proteins in 510 species: Archae - 4; Bacteria - 1501; Metazoa - 3658; Fungi - 1165; Plants - 1341; Viruses - 20; Other Eukaryotes - 1142 (source: NCBI BLink).  protein_id AT3G25150.1p  transcript_id AT3G25150.1  protein_id AT3G25150.1p  transcript_id AT3G25150.1  
At3g25160	chr3:009161795	0.0	C/9161795-9162023,9161340-9161539,9161103-9161243,9160670-9160750,9160467-9160594,9160337-9160376	AT3G25160.1  CDS  go_component integral to membrane|GO:0016021||IEA  go_process protein retention in ER lumen|GO:0006621||IEA  go_function ER retention sequence binding|GO:0046923||IEA  go_component integral to membrane|GO:0016021||ISS  go_process protein transport|GO:0015031||ISS  go_function receptor activity|GO:0004872||ISS  product ER lumen protein retaining receptor family protein  note ER lumen protein retaining receptor family protein; FUNCTIONS IN: ER retention sequence binding, receptor activity; INVOLVED IN: protein retention in ER lumen, protein transport; LOCATED IN: integral to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ER lumen protein retaining receptor (InterPro:IPR000133); BEST Arabidopsis thaliana protein match is: ER lumen protein retaining receptor family protein (TAIR:AT4G38790.1); Has 626 Blast hits to 626 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 264; Fungi - 118; Plants - 121; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).  protein_id AT3G25160.1p  transcript_id AT3G25160.1  protein_id AT3G25160.1p  transcript_id AT3G25160.1  
At3g25165	chr3:009163602	0.0	C/9163602-9163826	AT3G25165.1  CDS  gene_syn RALFL25, ralf-like 25  gene RALFL25  function Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  go_component apoplast|GO:0048046|12611624|ISS  go_process cell-cell signaling|GO:0007267|12611624|ISS  go_function signal transducer activity|GO:0004871|12611624|TAS  product RALFL25 (ralf-like 25); signal transducer  note ralf-like 25 (RALFL25); FUNCTIONS IN: signal transducer activity; INVOLVED IN: cell-cell signaling; LOCATED IN: apoplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALFL26 (ralf-like 26); signal transducer (TAIR:AT3G25170.1); Has 18 Blast hits to 18 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G25165.1p  transcript_id AT3G25165.1  protein_id AT3G25165.1p  transcript_id AT3G25165.1  
At3g25170	chr3:009165975	0.0	C/9165975-9166205	AT3G25170.1  CDS  gene_syn MJL12.13, RALFL26, ralf-like 26  gene RALFL26  function Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  go_component apoplast|GO:0048046|12611624|ISS  go_process cell-cell signaling|GO:0007267|12611624|ISS  go_function signal transducer activity|GO:0004871|12611624|TAS  product RALFL26 (ralf-like 26); signal transducer  note ralf-like 26 (RALFL26); FUNCTIONS IN: signal transducer activity; INVOLVED IN: cell-cell signaling; LOCATED IN: apoplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALFL11 (ralf-like 11); signal transducer (TAIR:AT2G19030.1); Has 27 Blast hits to 27 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G25170.1p  transcript_id AT3G25170.1  protein_id AT3G25170.1p  transcript_id AT3G25170.1  
At3g25180	chr3:009168347	0.0	C/9168347-9169270,9167889-9168173	AT3G25180.2  CDS  gene_syn CYP82G1  gene CYP82G1  function member of CYP82G  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP82G1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP82G1; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP82C4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G31940.1); Has 12378 Blast hits to 12324 proteins in 861 species: Archae - 14; Bacteria - 684; Metazoa - 5490; Fungi - 1437; Plants - 4478; Viruses - 0; Other Eukaryotes - 275 (source: NCBI BLink).  protein_id AT3G25180.2p  transcript_id AT3G25180.2  protein_id AT3G25180.2p  transcript_id AT3G25180.2  
At3g25180	chr3:009168347	0.0	C/9168347-9169270,9167954-9168173,9167443-9167846	AT3G25180.1  CDS  gene_syn CYP82G1  gene CYP82G1  function member of CYP82G  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP82G1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP82G1; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP82C4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G31940.1); Has 23976 Blast hits to 23872 proteins in 1281 species: Archae - 32; Bacteria - 2208; Metazoa - 10388; Fungi - 4651; Plants - 5728; Viruses - 6; Other Eukaryotes - 963 (source: NCBI BLink).  protein_id AT3G25180.1p  transcript_id AT3G25180.1  protein_id AT3G25180.1p  transcript_id AT3G25180.1  
At3g25182	chr3:009171056	0.0	C/9171056-9172204	AT3G25182.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G24050; DNA binding protein  
At3g25190	chr3:009174505	0.0	W/9174505-9174861,9175312-9175614	AT3G25190.1  CDS  gene_syn MJL12.26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product nodulin, putative  note nodulin, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, hypocotyl, flower, root, leaf; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF125, transmembrane (InterPro:IPR008217); BEST Arabidopsis thaliana protein match is: nodulin, putative (TAIR:AT3G43660.1); Has 1001 Blast hits to 999 proteins in 333 species: Archae - 43; Bacteria - 601; Metazoa - 0; Fungi - 65; Plants - 91; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink).  protein_id AT3G25190.1p  transcript_id AT3G25190.1  protein_id AT3G25190.1p  transcript_id AT3G25190.1  
At3g25200	chr3:009176932	0.0	W/9176932-9176982,9177633-9177739,9177835-9177924,9178010-9178268	AT3G25200.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G53240.1); Has 44 Blast hits to 44 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G25200.1p  transcript_id AT3G25200.1  protein_id AT3G25200.1p  transcript_id AT3G25200.1  
At3g25210	chr3:009180348	0.0	W/9180348-9181487	AT3G25210.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G27800.1); Has 13348 Blast hits to 4225 proteins in 143 species: Archae - 3; Bacteria - 6; Metazoa - 114; Fungi - 126; Plants - 12736; Viruses - 0; Other Eukaryotes - 363 (source: NCBI BLink).  protein_id AT3G25210.1p  transcript_id AT3G25210.1  protein_id AT3G25210.1p  transcript_id AT3G25210.1  
At3g25220	chr3:009182691	0.0	W/9182691-9182757,9182872-9182921,9183407-9183469,9183774-9183864,9183972-9184076,9184378-9184463	AT3G25220.1  CDS  gene_syn FKBP15-1  gene FKBP15-1  function immunophilin (FKBP15-1)  go_component endomembrane system|GO:0012505||IEA  go_process protein folding|GO:0006457||IEA  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  go_function FK506 binding|GO:0005528||ISS  product FKBP15-1; FK506 binding / peptidyl-prolyl cis-trans isomerase  note FKBP15-1; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FKBP15-2; FK506 binding / peptidyl-prolyl cis-trans isomerase (TAIR:AT5G48580.1); Has 7694 Blast hits to 7231 proteins in 1184 species: Archae - 98; Bacteria - 3655; Metazoa - 1570; Fungi - 357; Plants - 445; Viruses - 0; Other Eukaryotes - 1569 (source: NCBI BLink).  protein_id AT3G25220.1p  transcript_id AT3G25220.1  protein_id AT3G25220.1p  transcript_id AT3G25220.1  
At3g25221	chr3:009184688	0.0	W/9184688-9184792	AT3G25221.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G25221.1p  transcript_id AT3G25221.1  protein_id AT3G25221.1p  transcript_id AT3G25221.1  
At3g25225	chr3:009184970	0.0	W/9184970-9186171	AT3G25225.1  pseudogenic_transcript  pseudo  gene_syn MJL12.18  note pseudogene, hypothetical protein  
At3g25230	chr3:009188257	0.0	W/9188257-9188440,9188525-9188611,9188794-9189054,9189143-9189217,9189310-9189390,9189480-9189674,9189759-9189851,9189966-9190141,9190234-9190356,9190433-9190579,9190675-9190802,9190934-9191028,9191132-9191175	AT3G25230.2  CDS  gene_syn ROF1, ROTAMASE FKBP 1  gene ROF1  function Encodes a a high molecular weight member of the FK506 binding protein (FKBP) family. It has three FKBP12-like domains, tetratricopeptide repeats, and a putative calmodulin binding domain.  go_component cellular_component|GO:0005575||ND  go_process response to wounding|GO:0009611|8914512|IEP  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function FK506 binding|GO:0005528||ISS  product ROF1 (ROTAMASE FKBP 1); FK506 binding / calmodulin binding / peptidyl-prolyl cis-trans isomerase  note ROTAMASE FKBP 1 (ROF1); FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity, calmodulin binding; INVOLVED IN: response to wounding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026), Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative (TAIR:AT5G48570.1); Has 16595 Blast hits to 10794 proteins in 1191 species: Archae - 157; Bacteria - 5603; Metazoa - 5133; Fungi - 1219; Plants - 1100; Viruses - 0; Other Eukaryotes - 3383 (source: NCBI BLink).  protein_id AT3G25230.2p  transcript_id AT3G25230.2  protein_id AT3G25230.2p  transcript_id AT3G25230.2  
At3g25230	chr3:009188257	0.0	W/9188257-9188440,9188525-9188611,9188794-9189054,9189143-9189217,9189310-9189390,9189480-9189674,9189759-9189851,9189966-9190141,9190234-9190356,9190433-9190579,9190675-9190802,9190934-9191030,9191129-9191137	AT3G25230.1  CDS  gene_syn ROF1, ROTAMASE FKBP 1  gene ROF1  function Encodes a a high molecular weight member of the FK506 binding protein (FKBP) family. It has three FKBP12-like domains, tetratricopeptide repeats, and a putative calmodulin binding domain.  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cellular_component|GO:0005575||ND  go_process response to wounding|GO:0009611|8914512|IEP  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function FK506 binding|GO:0005528||ISS  product ROF1 (ROTAMASE FKBP 1); FK506 binding / calmodulin binding / peptidyl-prolyl cis-trans isomerase  note ROTAMASE FKBP 1 (ROF1); FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity, calmodulin binding; INVOLVED IN: response to cadmium ion, response to wounding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026), Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative (TAIR:AT5G48570.1); Has 16647 Blast hits to 10747 proteins in 1191 species: Archae - 157; Bacteria - 5568; Metazoa - 5202; Fungi - 1210; Plants - 1104; Viruses - 0; Other Eukaryotes - 3406 (source: NCBI BLink).  protein_id AT3G25230.1p  transcript_id AT3G25230.1  protein_id AT3G25230.1p  transcript_id AT3G25230.1  
At3g25233	chr3:009191832	0.0	C/9191832-9191924	AT3G25233.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G25233.1p  transcript_id AT3G25233.1  protein_id AT3G25233.1p  transcript_id AT3G25233.1  
At3g25240	chr3:009192540	0.0	W/9192540-9193385	AT3G25240.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G07350.1); Has 205 Blast hits to 205 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 203; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G25240.1p  transcript_id AT3G25240.1  protein_id AT3G25240.1p  transcript_id AT3G25240.1  
At3g25250	chr3:009195566	0.0	W/9195566-9195945,9196064-9196949	AT3G25250.1  CDS  gene_syn AGC2, AGC2-1, OXI1, OXIDATIVE SIGNAL-INDUCIBLE1  gene AGC2-1  function Arabidopsis protein kinase  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product AGC2-1 (OXIDATIVE SIGNAL-INDUCIBLE1); kinase  note OXIDATIVE SIGNAL-INDUCIBLE1 (AGC2-1); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root, pollen tube, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G13000.1); Has 64828 Blast hits to 62447 proteins in 1848 species: Archae - 27; Bacteria - 7072; Metazoa - 28276; Fungi - 7677; Plants - 7055; Viruses - 209; Other Eukaryotes - 14512 (source: NCBI BLink).  protein_id AT3G25250.1p  transcript_id AT3G25250.1  protein_id AT3G25250.1p  transcript_id AT3G25250.1  
At3g25260	chr3:009199594	0.0	W/9199594-9199690,9199784-9200001,9200083-9200594,9201044-9201764	AT3G25260.1  CDS  gene_syn MJL12.27  go_component membrane|GO:0016020||IEA  go_process oligopeptide transport|GO:0006857||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: embryo, flower; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT3G25280.1); Has 3372 Blast hits to 3345 proteins in 614 species: Archae - 0; Bacteria - 1354; Metazoa - 419; Fungi - 193; Plants - 1089; Viruses - 0; Other Eukaryotes - 317 (source: NCBI BLink).  protein_id AT3G25260.1p  transcript_id AT3G25260.1  protein_id AT3G25260.1p  transcript_id AT3G25260.1  
At3g25265	chr3:009203563	0.0	C/9203563-9203623,9202880-9203064	AT3G25265.1  CDS  gene_syn LCR4, Low-molecular-weight cysteine-rich 4  gene LCR4  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR4 (Low-molecular-weight cysteine-rich 4)  note Low-molecular-weight cysteine-rich 4 (LCR4); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); BEST Arabidopsis thaliana protein match is: LCR14 (Low-molecular-weight cysteine-rich 14) (TAIR:AT2G25344.1); Has 21 Blast hits to 21 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G25265.1p  transcript_id AT3G25265.1  protein_id AT3G25265.1p  transcript_id AT3G25265.1  
At3g25270	chr3:009203934	0.0	C/9203934-9204965	AT3G25270.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT2G04420.1); Has 815 Blast hits to 810 proteins in 65 species: Archae - 10; Bacteria - 79; Metazoa - 0; Fungi - 0; Plants - 723; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G25270.1p  transcript_id AT3G25270.1  protein_id AT3G25270.1p  transcript_id AT3G25270.1  
At3g25280	chr3:009206183	0.0	W/9206183-9206279,9206360-9206577,9206679-9207187,9207295-9208036	AT3G25280.1  CDS  go_component membrane|GO:0016020||IEA  go_process oligopeptide transport|GO:0006857||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT3G25260.1); Has 2363 Blast hits to 2306 proteins in 444 species: Archae - 0; Bacteria - 529; Metazoa - 443; Fungi - 181; Plants - 1083; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).  protein_id AT3G25280.1p  transcript_id AT3G25280.1  protein_id AT3G25280.1p  transcript_id AT3G25280.1  
At3g25290	chr3:009208955	0.0	W/9208955-9209608,9209695-9209949,9210081-9210353	AT3G25290.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component membrane|GO:0016020|10080694|ISS  go_process multicellular organismal development|GO:0007275||ISS  product auxin-responsive family protein  note auxin-responsive family protein; INVOLVED IN: multicellular organismal development; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP037471 (InterPro:IPR017214), Protein of unknown function DUF568, DOMON-like (InterPro:IPR007613), DOMON related (InterPro:IPR005018), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT4G12980.1); Has 386 Blast hits to 386 proteins in 66 species: Archae - 0; Bacteria - 4; Metazoa - 51; Fungi - 67; Plants - 253; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT3G25290.1p  transcript_id AT3G25290.1  protein_id AT3G25290.1p  transcript_id AT3G25290.1  
At3g25290	chr3:009208955	0.0	W/9208955-9209608,9209695-9209949,9210081-9210353	AT3G25290.2  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component membrane|GO:0016020|10080694|ISS  go_process multicellular organismal development|GO:0007275||ISS  product auxin-responsive family protein  note auxin-responsive family protein; INVOLVED IN: multicellular organismal development; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP037471 (InterPro:IPR017214), Protein of unknown function DUF568, DOMON-like (InterPro:IPR007613), DOMON related (InterPro:IPR005018), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT4G12980.1); Has 386 Blast hits to 386 proteins in 66 species: Archae - 0; Bacteria - 4; Metazoa - 51; Fungi - 67; Plants - 253; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT3G25290.2p  transcript_id AT3G25290.2  protein_id AT3G25290.2p  transcript_id AT3G25290.2  
At3g25400	chr3:009213236	0.0	W/9213236-9213370,9213854-9214144	AT3G25400.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: NTP Pyrophosphohydrolase MazG-related, RS21-C6 (InterPro:IPR011394), EAR (InterPro:IPR009039), NTP pyrophosphohydrolase MazG, putative catalytic core (InterPro:IPR004518); Has 572 Blast hits to 572 proteins in 181 species: Archae - 11; Bacteria - 286; Metazoa - 71; Fungi - 1; Plants - 31; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink).  protein_id AT3G25400.1p  transcript_id AT3G25400.1  protein_id AT3G25400.1p  transcript_id AT3G25400.1  
At3g25410	chr3:009215928	0.0	C/9215928-9216331,9215625-9215720,9215232-9215538,9214908-9215155,9214565-9214805	AT3G25410.1  CDS  go_component chloroplast|GO:0009507||IEA  go_component membrane|GO:0016020||IEA  go_process sodium ion transport|GO:0006814||IEA  go_component membrane|GO:0016020||ISS  go_process sodium ion transport|GO:0006814||ISS  go_function transporter activity|GO:0005215||ISS  go_function bile acid:sodium symporter activity|GO:0008508||ISS  product bile acid:sodium symporter family protein  note bile acid:sodium symporter family protein; FUNCTIONS IN: transporter activity, bile acid:sodium symporter activity; INVOLVED IN: sodium ion transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bile acid:sodium symporter (InterPro:IPR002657); BEST Arabidopsis thaliana protein match is: bile acid:sodium symporter family protein (TAIR:AT4G12030.2); Has 2839 Blast hits to 2831 proteins in 563 species: Archae - 34; Bacteria - 1123; Metazoa - 325; Fungi - 0; Plants - 156; Viruses - 0; Other Eukaryotes - 1201 (source: NCBI BLink).  protein_id AT3G25410.1p  transcript_id AT3G25410.1  protein_id AT3G25410.1p  transcript_id AT3G25410.1  
At3g25420	chr3:009217832	0.0	W/9217832-9217971,9218098-9218243,9218388-9218458,9218549-9218671,9218756-9218862,9219002-9219035,9219216-9219317,9219402-9219731,9220041-9220146,9220224-9220338,9220425-9220538,9220613-9220658,9220753-9220836	AT3G25420.1  CDS  gene_syn scpl21, serine carboxypeptidase-like 21  gene scpl21  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl21 (serine carboxypeptidase-like 21); serine-type carboxypeptidase  note serine carboxypeptidase-like 21 (scpl21); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: stem, embryo, pollen tube, leaf; EXPRESSED DURING: LP.04 four leaves visible, C globular stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl20 (serine carboxypeptidase-like 20); serine-type carboxypeptidase (TAIR:AT4G12910.1); Has 2793 Blast hits to 2475 proteins in 249 species: Archae - 0; Bacteria - 76; Metazoa - 648; Fungi - 647; Plants - 1048; Viruses - 0; Other Eukaryotes - 374 (source: NCBI BLink).  protein_id AT3G25420.1p  transcript_id AT3G25420.1  protein_id AT3G25420.1p  transcript_id AT3G25420.1  
At3g25430	chr3:009221204	0.0	W/9221204-9221529,9221621-9221751,9221826-9222017,9222114-9222226,9222328-9222444,9222544-9222658,9222751-9222963,9223051-9223700	AT3G25430.1  CDS  go_component nucleus|GO:0005634||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process RNA modification|GO:0009451||ISS  go_function ribonuclease activity|GO:0004540||ISS  product CAF1 family ribonuclease  note CAF1 family ribonuclease; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: AHG2 (ABA-HYPERSENSITIVE GERMINATION 2); nucleic acid binding / ribonuclease (TAIR:AT1G55870.1); Has 240 Blast hits to 239 proteins in 86 species: Archae - 0; Bacteria - 6; Metazoa - 125; Fungi - 29; Plants - 28; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT3G25430.1p  transcript_id AT3G25430.1  protein_id AT3G25430.1p  transcript_id AT3G25430.1  
At3g25440	chr3:009223998	0.0	W/9223998-9224137,9224242-9224542,9224612-9225505	AT3G25440.1  CDS  go_component chloroplast|GO:0009507||IEA  go_function RNA binding|GO:0003723||IEA  go_process biological_process|GO:0008150||ND  product RNA binding  note RNA binding; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: shoot apex, leaf whorl, embryo, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA binding (TAIR:AT2G28480.1); Has 705 Blast hits to 571 proteins in 91 species: Archae - 3; Bacteria - 17; Metazoa - 202; Fungi - 48; Plants - 212; Viruses - 40; Other Eukaryotes - 183 (source: NCBI BLink).  protein_id AT3G25440.1p  transcript_id AT3G25440.1  protein_id AT3G25440.1p  transcript_id AT3G25440.1  
At3g25440	chr3:009224294	0.0	W/9224294-9224542,9224612-9225505	AT3G25440.2  CDS  go_function RNA binding|GO:0003723||IEA  go_process biological_process|GO:0008150||ND  product RNA binding  note RNA binding; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: shoot apex, leaf whorl, embryo, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA binding (TAIR:AT2G28480.1); Has 699 Blast hits to 566 proteins in 92 species: Archae - 3; Bacteria - 17; Metazoa - 201; Fungi - 48; Plants - 212; Viruses - 39; Other Eukaryotes - 179 (source: NCBI BLink).  protein_id AT3G25440.2p  transcript_id AT3G25440.2  protein_id AT3G25440.2p  transcript_id AT3G25440.2  
At3g25450	chr3:009226964	0.0	W/9226964-9231109	AT3G25450.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 6.7e-211 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At3g25460	chr3:009231581	0.0	C/9231581-9232666	AT3G25460.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G47300.1); Has 922 Blast hits to 903 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 921; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G25460.1p  transcript_id AT3G25460.1  protein_id AT3G25460.1p  transcript_id AT3G25460.1  
At3g25470	chr3:009233039	0.0	W/9233039-9233126,9233387-9233453,9233541-9233623,9233722-9233824,9233923-9234079,9234157-9234285,9234381-9234467,9234632-9234676,9234876-9235022	AT3G25470.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process hemolysis by symbiont of host erythrocytes|GO:0019836||IEA  go_function RNA binding|GO:0003723||IEA  product bacterial hemolysin-related  note bacterial hemolysin-related; FUNCTIONS IN: RNA binding; INVOLVED IN: hemolysis by symbiont of host erythrocytes; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding S4 (InterPro:IPR002942), Ribosomal RNA methyltransferase RrmJ/FtsJ (InterPro:IPR002877), Haemolysin A (InterPro:IPR004538); Has 2208 Blast hits to 2200 proteins in 804 species: Archae - 6; Bacteria - 1525; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 657 (source: NCBI BLink).  protein_id AT3G25470.1p  transcript_id AT3G25470.1  protein_id AT3G25470.1p  transcript_id AT3G25470.1  
At3g25480	chr3:009236012	0.0	C/9236012-9236598,9235787-9235889,9235591-9235695	AT3G25480.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product rhodanese-like domain-containing protein  note rhodanese-like domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT4G01050.1); Has 48 Blast hits to 48 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G25480.1p  transcript_id AT3G25480.1  protein_id AT3G25480.1p  transcript_id AT3G25480.1  
At3g25485	chr3:009236887	0.0	C/9236887-9240548	AT3G25485.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.3e-49 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At3g25490	chr3:009241725	0.0	W/9241725-9241836,9241924-9243113	AT3G25490.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function kinase activity|GO:0016301||ISS  product wall-associated kinase, putative  note wall-associated kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: WAK5 (WALL ASSOCIATED KINASE 5); kinase/ protein serine/threonine kinase (TAIR:AT1G21230.1); Has 84474 Blast hits to 83482 proteins in 3060 species: Archae - 62; Bacteria - 7622; Metazoa - 37104; Fungi - 6477; Plants - 18501; Viruses - 409; Other Eukaryotes - 14299 (source: NCBI BLink).  protein_id AT3G25490.1p  transcript_id AT3G25490.1  protein_id AT3G25490.1p  transcript_id AT3G25490.1  
At3g25495	chr3:009244325	0.0	W/9244325-9250768	AT3G25495.1  pseudogenic_transcript  pseudo  gene_syn MWL2.13  function pseudogene of leucine-rich repeat protein  note expressed protein  
At3g25500	chr3:009252953	0.0	C/9252953-9254826,9252661-9252866,9252235-9252479,9251320-9252150	AT3G25500.1  CDS  gene_syn AFH1, AHF1, ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, ATFH1, FH1, FORMIN HOMOLOGY 1, FORMIN-LIKE PROTEIN AHF1  gene AFH1  function Poly-L-proline-containing (PLP) protein that form part of the signal-transduction cascade that leads to rearrangement of the actin cytoskeleton. AFH1 is a nonprocessive formin that moves from the barbered end to the side of an actin filament after the nucleation event.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|10929945|IDA  go_process actin cytoskeleton organization|GO:0030036|10929945|TAS  go_process actin cytoskeleton organization|GO:0030036|17027489|IDA  go_function actin binding|GO:0003779|12417149|ISS  go_function actin binding|GO:0003779|15256004|ISS  go_function actin binding|GO:0003779||ISS  go_function protein binding|GO:0005515|10929945|IPI  go_function actin filament binding|GO:0051015|15994911|IDA  product AFH1 (FORMIN HOMOLOGY 1); actin binding / actin filament binding / protein binding  note FORMIN HOMOLOGY 1 (AFH1); FUNCTIONS IN: protein binding, actin binding, actin filament binding; INVOLVED IN: actin cytoskeleton organization; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding FH2 and DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: formin homology 2 domain-containing protein / FH2 domain-containing protein (TAIR:AT2G43800.1); Has 15619 Blast hits to 9330 proteins in 536 species: Archae - 8; Bacteria - 1017; Metazoa - 5934; Fungi - 2154; Plants - 2932; Viruses - 705; Other Eukaryotes - 2869 (source: NCBI BLink).  protein_id AT3G25500.1p  transcript_id AT3G25500.1  protein_id AT3G25500.1p  transcript_id AT3G25500.1  
At3g25510	chr3:009268208	0.0	C/9268208-9268797,9266922-9267954,9266473-9266832,9264484-9266262,9264351-9264401,9263005-9263372,9261773-9262889,9261379-9261672,9260838-9261191	AT3G25510.1  CDS  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: epidermis; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat 3 (InterPro:IPR011713), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT1G65850.1); Has 60296 Blast hits to 20536 proteins in 706 species: Archae - 50; Bacteria - 2790; Metazoa - 6771; Fungi - 428; Plants - 46427; Viruses - 24; Other Eukaryotes - 3806 (source: NCBI BLink).  protein_id AT3G25510.1p  transcript_id AT3G25510.1  protein_id AT3G25510.1p  transcript_id AT3G25510.1  
At3g25520	chr3:009271325	0.0	C/9271325-9271327,9270882-9270951,9270571-9270789,9270396-9270475,9270194-9270310,9269773-9270077,9269573-9269684	AT3G25520.1  CDS  gene_syn A. THALIANA RIBOSOMAL PROTEIN L5, ATL5, OLI5, OLIGOCELLULA 5, PGY3, PIGGYBACK3, RIBOSOMAL PROTEIN L5, RIBOSOMAL PROTEIN L5 A, RPL5A  gene ATL5  function Encodes ribosomal protein L5 that binds to 5S ribosomal RNA and in involved in its export from the nucleus to the cytoplasm. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2.  go_component nucleus|GO:0005634|12711688|IDA  go_component nucleolus|GO:0005730|12711688|IDA  go_component cytoplasm|GO:0005737|12711688|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process nucleocytoplasmic transport|GO:0006913|12711688|TAS  go_process adaxial/abaxial pattern formation|GO:0009955|18305008|IGI  go_function 5S rRNA binding|GO:0008097|12711688|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5); 5S rRNA binding / structural constituent of ribosome  note A. THALIANA RIBOSOMAL PROTEIN L5 (ATL5); FUNCTIONS IN: structural constituent of ribosome, 5S rRNA binding; INVOLVED IN: adaxial/abaxial pattern formation, nucleocytoplasmic transport, translation, ribosome biogenesis; LOCATED IN: in 10 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L5, eukaryotic (InterPro:IPR005485), Ribosomal protein L18/L5 (InterPro:IPR005484); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L5 (RPL5B) (TAIR:AT5G39740.1); Has 937 Blast hits to 936 proteins in 332 species: Archae - 245; Bacteria - 6; Metazoa - 325; Fungi - 105; Plants - 79; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).  protein_id AT3G25520.1p  transcript_id AT3G25520.1  protein_id AT3G25520.1p  transcript_id AT3G25520.1  
At3g25530	chr3:009273410	0.0	C/9273410-9273514,9273157-9273267,9272976-9273044,9272790-9272891,9272548-9272663,9272380-9272458,9272139-9272309,9271949-9272032	AT3G25530.2  CDS  gene_syn ATGHBDH, GHBDH, GLYOXYLATE REDUCTASE 1, GLYR1, GR1  gene GLYR1  function Encodes gamma-hydroxybutyrate dehydrogenase (AtGHBDH). Contains a NADP-binding domain. GHBDH is proposed to function in oxidative stress tolerance.  go_component cytosol|GO:0005829|18495639|IDA  go_process response to oxidative stress|GO:0006979|12882961|IMP  go_function 3-hydroxybutyrate dehydrogenase activity|GO:0003858|12882961|IMP  go_function phosphogluconate dehydrogenase (decarboxylating) activity|GO:0004616||ISS  product GLYR1 (GLYOXYLATE REDUCTASE 1); 3-hydroxybutyrate dehydrogenase/ phosphogluconate dehydrogenase (decarboxylating)  note GLYOXYLATE REDUCTASE 1 (GLYR1); FUNCTIONS IN: phosphogluconate dehydrogenase (decarboxylating) activity, 3-hydroxybutyrate dehydrogenase activity; INVOLVED IN: response to oxidative stress; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), 3-hydroxyacid dehydrogenase/reductase (InterPro:IPR015815), NAD(P)-binding (InterPro:IPR016040), 3-hydroxyisobutyrate dehydrogenase-related, conserved site (InterPro:IPR002204); BEST Arabidopsis thaliana protein match is: GLYR2 (GLYOXYLATE REDUCTASE 2); glyoxylate reductase (NADP)/ phosphogluconate dehydrogenase (decarboxylating) (TAIR:AT1G17650.1); Has 11880 Blast hits to 11858 proteins in 1267 species: Archae - 88; Bacteria - 5895; Metazoa - 341; Fungi - 311; Plants - 195; Viruses - 2; Other Eukaryotes - 5048 (source: NCBI BLink).  protein_id AT3G25530.2p  transcript_id AT3G25530.2  protein_id AT3G25530.2p  transcript_id AT3G25530.2  
At3g25530	chr3:009273410	0.0	C/9273410-9273514,9273157-9273267,9272976-9273077,9272790-9272891,9272548-9272663,9272380-9272458,9272139-9272309,9271949-9272032	AT3G25530.1  CDS  gene_syn ATGHBDH, GHBDH, GLYOXYLATE REDUCTASE 1, GLYR1, GR1  gene GLYR1  function Encodes gamma-hydroxybutyrate dehydrogenase (AtGHBDH). Contains a NADP-binding domain. GHBDH is proposed to function in oxidative stress tolerance.  go_component cytosol|GO:0005829|18495639|IDA  go_process response to oxidative stress|GO:0006979|12882961|IMP  go_function 3-hydroxybutyrate dehydrogenase activity|GO:0003858|12882961|IMP  go_function phosphogluconate dehydrogenase (decarboxylating) activity|GO:0004616||ISS  product GLYR1 (GLYOXYLATE REDUCTASE 1); 3-hydroxybutyrate dehydrogenase/ phosphogluconate dehydrogenase (decarboxylating)  note GLYOXYLATE REDUCTASE 1 (GLYR1); FUNCTIONS IN: phosphogluconate dehydrogenase (decarboxylating) activity, 3-hydroxybutyrate dehydrogenase activity; INVOLVED IN: response to oxidative stress; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), 3-hydroxyacid dehydrogenase/reductase (InterPro:IPR015815), 6-phosphogluconate dehydrogenase (InterPro:IPR006183), NAD(P)-binding (InterPro:IPR016040), 3-hydroxyisobutyrate dehydrogenase-related, conserved site (InterPro:IPR002204); BEST Arabidopsis thaliana protein match is: GLYR2 (GLYOXYLATE REDUCTASE 2); glyoxylate reductase (NADP)/ phosphogluconate dehydrogenase (decarboxylating) (TAIR:AT1G17650.1); Has 12372 Blast hits to 12352 proteins in 1312 species: Archae - 90; Bacteria - 6154; Metazoa - 360; Fungi - 334; Plants - 195; Viruses - 2; Other Eukaryotes - 5237 (source: NCBI BLink).  protein_id AT3G25530.1p  transcript_id AT3G25530.1  protein_id AT3G25530.1p  transcript_id AT3G25530.1  
At3g25540	chr3:009274752	0.0	W/9274752-9274889,9275157-9275395,9275472-9275627,9275706-9275891,9275973-9276154,9276230-9276261	AT3G25540.1  CDS  gene_syn LAG1, LAG1 HOMOLOG 1  gene LAG1  function LAG1 homolog 1  go_component plasma membrane|GO:0005886|14506206|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component endoplasmic reticulum|GO:0005783|18643979|IDA  go_component Golgi apparatus|GO:0005794|18643979|IDA  go_function molecular_function|GO:0003674||ND  product LAG1  note LAG1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: endoplasmic reticulum, Golgi apparatus, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Longevity assurance, LAG1/LAC1 (InterPro:IPR016439), TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) (TAIR:AT1G13580.2); Has 931 Blast hits to 931 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 501; Fungi - 203; Plants - 101; Viruses - 2; Other Eukaryotes - 124 (source: NCBI BLink).  protein_id AT3G25540.1p  transcript_id AT3G25540.1  protein_id AT3G25540.1p  transcript_id AT3G25540.1  
At3g25545	chr3:009277637	0.0	W/9277637-9278440	AT3G25545.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 17 Blast hits to 17 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G25545.1p  transcript_id AT3G25545.1  protein_id AT3G25545.1p  transcript_id AT3G25545.1  
At3g25550	chr3:009278878	0.0	W/9278878-9279038,9279114-9279435,9279531-9279587	AT3G25550.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G02030.1); Has 148 Blast hits to 148 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 146; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G25550.1p  transcript_id AT3G25550.1  protein_id AT3G25550.1p  transcript_id AT3G25550.1  
At3g25560	chr3:009282434	0.0	C/9282434-9282560,9282214-9282343,9282057-9282128,9281825-9281968,9281654-9281725,9281506-9281565,9281252-9281349,9280999-9281151,9280562-9280903,9280105-9280484,9279682-9280011	AT3G25560.1  CDS  gene_syn NIK2, NSP-INTERACTING KINASE 2  gene NIK2  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  product NIK2 (NSP-INTERACTING KINASE 2); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase  note NSP-INTERACTING KINASE 2 (NIK2); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: NIK1 (NSP-INTERACTING KINASE 1); kinase (TAIR:AT5G16000.1); Has 115889 Blast hits to 83320 proteins in 3137 species: Archae - 57; Bacteria - 8372; Metazoa - 37642; Fungi - 5578; Plants - 48760; Viruses - 399; Other Eukaryotes - 15081 (source: NCBI BLink).  protein_id AT3G25560.1p  transcript_id AT3G25560.1  protein_id AT3G25560.1p  transcript_id AT3G25560.1  
At3g25560	chr3:009282434	0.0	C/9282434-9282560,9282214-9282343,9282057-9282128,9281825-9281968,9281654-9281728,9281506-9281565,9281252-9281349,9280999-9281151,9280562-9280903,9280105-9280484,9279682-9280011	AT3G25560.2  CDS  gene_syn NIK2, NSP-INTERACTING KINASE 2  gene NIK2  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  product NIK2 (NSP-INTERACTING KINASE 2); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase  note NSP-INTERACTING KINASE 2 (NIK2); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: NIK1 (NSP-INTERACTING KINASE 1); kinase (TAIR:AT5G16000.1); Has 107273 Blast hits to 80918 proteins in 3119 species: Archae - 53; Bacteria - 7579; Metazoa - 35350; Fungi - 5480; Plants - 44023; Viruses - 399; Other Eukaryotes - 14389 (source: NCBI BLink).  protein_id AT3G25560.2p  transcript_id AT3G25560.2  protein_id AT3G25560.2p  transcript_id AT3G25560.2  
At3g25570	chr3:009287413	0.0	C/9287413-9288462	AT3G25570.1  CDS  go_process spermine biosynthetic process|GO:0006597||IEA  go_process spermidine biosynthetic process|GO:0008295||IEA  go_function adenosylmethionine decarboxylase activity|GO:0004014||IEA  go_component cellular_component|GO:0005575||ND  go_function adenosylmethionine decarboxylase activity|GO:0004014||ISS  product adenosylmethionine decarboxylase family protein  note adenosylmethionine decarboxylase family protein; FUNCTIONS IN: adenosylmethionine decarboxylase activity; INVOLVED IN: spermidine biosynthetic process, spermine biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine decarboxylase, core (InterPro:IPR016067), S-adenosylmethionine decarboxylase (InterPro:IPR001985), S-adenosylmethionine decarboxylase, conserved site (InterPro:IPR018166), S-adenosylmethionine decarboxylase subgroup (InterPro:IPR018167); BEST Arabidopsis thaliana protein match is: SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE); adenosylmethionine decarboxylase (TAIR:AT3G02470.4); Has 831 Blast hits to 815 proteins in 204 species: Archae - 0; Bacteria - 50; Metazoa - 175; Fungi - 104; Plants - 446; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT3G25570.1p  transcript_id AT3G25570.1  protein_id AT3G25570.1p  transcript_id AT3G25570.1  
At3g25572	chr3:009288728	0.0	C/9288728-9288871,9288595-9288615	AT3G25572.1  CDS  gene_syn CPuORF11, Conserved peptide upstream open reading frame 11  gene CPuORF11  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF11 represents a conserved upstream opening reading frame relative to major ORF AT3G25570.1  product CPuORF11 (Conserved peptide upstream open reading frame 11)  note Conserved peptide upstream open reading frame 11 (CPuORF11); CONTAINS InterPro DOMAIN/s: S-adenosyl-l-methionine decarboxylase leader peptide (InterPro:IPR012511); BEST Arabidopsis thaliana protein match is: CPuORF9 (Conserved peptide upstream open reading frame 9) (TAIR:AT3G02468.1); Has 24 Blast hits to 24 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G25572.1p  transcript_id AT3G25572.1  protein_id AT3G25572.1p  transcript_id AT3G25572.1  
At3g25573	chr3:009290313	0.0	W/9290313-9290504	AT3G25573.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G25573.1p  transcript_id AT3G25573.1  protein_id AT3G25573.1p  transcript_id AT3G25573.1  
At3g25577	chr3:009291686	0.0	W/9291686-9291928	AT3G25577.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25573.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G25577.1p  transcript_id AT3G25577.1  protein_id AT3G25577.1p  transcript_id AT3G25577.1  
At3g25580	chr3:009292557	0.0	W/9292557-9292577,9292659-9292934,9293736-9293894,9293972-9294148	AT3G25580.1  CDS  go_component cellular_component|GO:0005575||ND  product thioredoxin-related  note thioredoxin-related; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: TXND9 (THIOREDOXIN DOMAIN-CONTAINING PROTEIN 9 HOMOLOG) (TAIR:AT2G18990.1); Has 766 Blast hits to 766 proteins in 192 species: Archae - 11; Bacteria - 40; Metazoa - 335; Fungi - 115; Plants - 117; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink).  protein_id AT3G25580.1p  transcript_id AT3G25580.1  protein_id AT3G25580.1p  transcript_id AT3G25580.1  
At3g25585	chr3:009295856	0.0	W/9295856-9295992,9296094-9296103,9296194-9296244,9296333-9296410,9296512-9296711,9296797-9296891,9296972-9297040,9297142-9297211,9297322-9297385,9297483-9297523,9297602-9297686,9297759-9297821,9297900-9297958,9298031-9298156,9298250-9298271	AT3G25585.1  CDS  gene_syn AAPT2, AMINOALCOHOLPHOSPHOTRANSFERASE  gene AAPT2  function aminoalcoholphosphotransferase (AAPT2) mRNA, complete cds  go_component membrane|GO:0016020||IEA  go_process phospholipid biosynthetic process|GO:0008654||IEA  go_function phosphotransferase activity, for other substituted phosphate groups|GO:0016780||IEA  go_process phospholipid biosynthetic process|GO:0008654||ISS  go_function phosphatidyltransferase activity|GO:0030572||ISS  product AAPT2 (AMINOALCOHOLPHOSPHOTRANSFERASE); phosphatidyltransferase/ phosphotransferase, for other substituted phosphate groups  note AMINOALCOHOLPHOSPHOTRANSFERASE (AAPT2); FUNCTIONS IN: phosphatidyltransferase activity, phosphotransferase activity, for other substituted phosphate groups; INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Choline/ethanolaminephosphotransferase (InterPro:IPR014472), CDP-alcohol phosphatidyltransferase (InterPro:IPR000462); BEST Arabidopsis thaliana protein match is: AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1); phosphatidyltransferase/ phosphotransferase, for other substituted phosphate groups (TAIR:AT1G13560.1); Has 746 Blast hits to 738 proteins in 174 species: Archae - 6; Bacteria - 26; Metazoa - 346; Fungi - 148; Plants - 49; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).  protein_id AT3G25585.1p  transcript_id AT3G25585.1  protein_id AT3G25585.1p  transcript_id AT3G25585.1  
At3g25585	chr3:009295856	0.0	W/9295856-9295992,9296094-9296103,9296194-9296244,9296333-9296410,9296512-9296711,9296797-9296891,9296972-9297040,9297142-9297211,9297322-9297385,9297483-9297523,9297602-9297686,9297759-9297821,9297900-9297958,9298031-9298156,9298250-9298271	AT3G25585.2  CDS  gene_syn AAPT2, AMINOALCOHOLPHOSPHOTRANSFERASE  gene AAPT2  function aminoalcoholphosphotransferase (AAPT2) mRNA, complete cds  go_component membrane|GO:0016020||IEA  go_process phospholipid biosynthetic process|GO:0008654||IEA  go_function phosphotransferase activity, for other substituted phosphate groups|GO:0016780||IEA  go_process phospholipid biosynthetic process|GO:0008654||ISS  go_function phosphatidyltransferase activity|GO:0030572||ISS  product AAPT2 (AMINOALCOHOLPHOSPHOTRANSFERASE); phosphatidyltransferase/ phosphotransferase, for other substituted phosphate groups  note AMINOALCOHOLPHOSPHOTRANSFERASE (AAPT2); FUNCTIONS IN: phosphatidyltransferase activity, phosphotransferase activity, for other substituted phosphate groups; INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Choline/ethanolaminephosphotransferase (InterPro:IPR014472), CDP-alcohol phosphatidyltransferase (InterPro:IPR000462); BEST Arabidopsis thaliana protein match is: AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1); phosphatidyltransferase/ phosphotransferase, for other substituted phosphate groups (TAIR:AT1G13560.1); Has 746 Blast hits to 738 proteins in 174 species: Archae - 6; Bacteria - 26; Metazoa - 346; Fungi - 148; Plants - 49; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).  protein_id AT3G25585.2p  transcript_id AT3G25585.2  protein_id AT3G25585.2p  transcript_id AT3G25585.2  
At3g25585	chr3:009295856	0.0	W/9295856-9295992,9296094-9296103,9296194-9296244,9296333-9296410,9296512-9296711,9296797-9296891,9296972-9297040,9297142-9297211,9297322-9297385,9297483-9297523,9297602-9297686,9297759-9297821,9297900-9297958,9298031-9298156,9298250-9298271	AT3G25585.4  CDS  gene_syn AAPT2, AMINOALCOHOLPHOSPHOTRANSFERASE  gene AAPT2  function aminoalcoholphosphotransferase (AAPT2) mRNA, complete cds  go_component membrane|GO:0016020||IEA  go_process phospholipid biosynthetic process|GO:0008654||IEA  go_function phosphotransferase activity, for other substituted phosphate groups|GO:0016780||IEA  go_process phospholipid biosynthetic process|GO:0008654||ISS  go_function phosphatidyltransferase activity|GO:0030572||ISS  product AAPT2 (AMINOALCOHOLPHOSPHOTRANSFERASE); phosphatidyltransferase/ phosphotransferase, for other substituted phosphate groups  note AMINOALCOHOLPHOSPHOTRANSFERASE (AAPT2); FUNCTIONS IN: phosphatidyltransferase activity, phosphotransferase activity, for other substituted phosphate groups; INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Choline/ethanolaminephosphotransferase (InterPro:IPR014472), CDP-alcohol phosphatidyltransferase (InterPro:IPR000462); BEST Arabidopsis thaliana protein match is: AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1); phosphatidyltransferase/ phosphotransferase, for other substituted phosphate groups (TAIR:AT1G13560.1); Has 746 Blast hits to 738 proteins in 174 species: Archae - 6; Bacteria - 26; Metazoa - 346; Fungi - 148; Plants - 49; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).  protein_id AT3G25585.4p  transcript_id AT3G25585.4  protein_id AT3G25585.4p  transcript_id AT3G25585.4  
At3g25585	chr3:009296203	0.0	W/9296203-9296244,9296333-9296410,9296512-9296711,9296797-9296891,9296972-9297040,9297142-9297211,9297322-9297385,9297483-9297523,9297602-9297686,9297759-9297821,9297900-9297958,9298031-9298156,9298250-9298271	AT3G25585.3  CDS  gene_syn AAPT2, AMINOALCOHOLPHOSPHOTRANSFERASE  gene AAPT2  function aminoalcoholphosphotransferase (AAPT2) mRNA, complete cds  go_component membrane|GO:0016020||IEA  go_process phospholipid biosynthetic process|GO:0008654||IEA  go_function phosphotransferase activity, for other substituted phosphate groups|GO:0016780||IEA  go_process phospholipid biosynthetic process|GO:0008654||ISS  go_function phosphatidyltransferase activity|GO:0030572||ISS  product AAPT2 (AMINOALCOHOLPHOSPHOTRANSFERASE); phosphatidyltransferase/ phosphotransferase, for other substituted phosphate groups  note AMINOALCOHOLPHOSPHOTRANSFERASE (AAPT2); FUNCTIONS IN: phosphatidyltransferase activity, phosphotransferase activity, for other substituted phosphate groups; INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CDP-alcohol phosphatidyltransferase (InterPro:IPR000462); BEST Arabidopsis thaliana protein match is: AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1); phosphatidyltransferase/ phosphotransferase, for other substituted phosphate groups (TAIR:AT1G13560.2); Has 685 Blast hits to 679 proteins in 160 species: Archae - 0; Bacteria - 4; Metazoa - 342; Fungi - 146; Plants - 49; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).  protein_id AT3G25585.3p  transcript_id AT3G25585.3  protein_id AT3G25585.3p  transcript_id AT3G25585.3  
At3g25590	chr3:009302271	0.0	W/9302271-9303542	AT3G25590.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 178 Blast hits to 138 proteins in 40 species: Archae - 0; Bacteria - 4; Metazoa - 90; Fungi - 6; Plants - 22; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT3G25590.1p  transcript_id AT3G25590.1  protein_id AT3G25590.1p  transcript_id AT3G25590.1  
At3g25597	chr3:009306103	0.0	W/9306103-9306585	AT3G25597.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26140.1); Has 14 Blast hits to 14 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G25597.1p  transcript_id AT3G25597.1  protein_id AT3G25597.1p  transcript_id AT3G25597.1  
At3g25600	chr3:009307367	0.0	W/9307367-9307852	AT3G25600.1  CDS  gene_syn T5M7.6  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium ion binding  note calcium ion binding; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin, putative (TAIR:AT1G18530.1); Has 18765 Blast hits to 12295 proteins in 1258 species: Archae - 0; Bacteria - 92; Metazoa - 7486; Fungi - 4854; Plants - 3473; Viruses - 0; Other Eukaryotes - 2860 (source: NCBI BLink).  protein_id AT3G25600.1p  transcript_id AT3G25600.1  protein_id AT3G25600.1p  transcript_id AT3G25600.1  
At3g25610	chr3:009312955	0.0	C/9312955-9313353,9312358-9312807,9311384-9312279,9311196-9311306,9310842-9311118,9310658-9310746,9310260-9310578,9309954-9310178,9309673-9309864,9308942-9309592	AT3G25610.1  CDS  gene_syn T5M7.10  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process ATP biosynthetic process|GO:0006754||IEA  go_process metabolic process|GO:0008152||IEA  go_process phospholipid transport|GO:0015914||IEA  go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662||ISS  product haloacid dehalogenase-like hydrolase family protein  note haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: metabolic process, phospholipid transport, ATP biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, phospholipid-translocating, flippase (InterPro:IPR006539), ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), HAD superfamily hydrolase-like, type 3 (InterPro:IPR013200); BEST Arabidopsis thaliana protein match is: ACA.l (autoinhibited Ca2+/ATPase II); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism / calmodulin binding (TAIR:AT1G13210.1); Has 8438 Blast hits to 7431 proteins in 929 species: Archae - 91; Bacteria - 2011; Metazoa - 2748; Fungi - 1347; Plants - 683; Viruses - 3; Other Eukaryotes - 1555 (source: NCBI BLink).  protein_id AT3G25610.1p  transcript_id AT3G25610.1  protein_id AT3G25610.1p  transcript_id AT3G25610.1  
At3g25620	chr3:009319299	0.0	C/9319299-9319505,9318406-9319207,9317812-9318009,9317513-9317709	AT3G25620.1  CDS  gene_syn T5M7.11  go_component chloroplast|GO:0009507||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ABC transporter family protein  note ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT1G31770.1); Has 234840 Blast hits to 213483 proteins in 2603 species: Archae - 4260; Bacteria - 161045; Metazoa - 7782; Fungi - 4565; Plants - 2715; Viruses - 13; Other Eukaryotes - 54460 (source: NCBI BLink).  protein_id AT3G25620.1p  transcript_id AT3G25620.1  protein_id AT3G25620.1p  transcript_id AT3G25620.1  
At3g25630	chr3:009331656	0.0	C/9331656-9332465	AT3G25630.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 7.8e-20 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g25640	chr3:009333775	0.0	W/9333775-9334578	AT3G25640.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF617, plant (InterPro:IPR006460); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23100.1); Has 135 Blast hits to 134 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G25640.1p  transcript_id AT3G25640.1  protein_id AT3G25640.1p  transcript_id AT3G25640.1  
At3g25650	chr3:009336214	0.0	C/9336214-9336459,9335876-9336163	AT3G25650.1  CDS  gene_syn ARABIDOPSIS SKP1-LIKE 15, ASK15, T5M7.16  gene ASK15  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function protein binding|GO:0005515||IEA  go_component SCF ubiquitin ligase complex|GO:0019005|12970487|ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product ASK15 (ARABIDOPSIS SKP1-LIKE 15); protein binding / ubiquitin-protein ligase  note ARABIDOPSIS SKP1-LIKE 15 (ASK15); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: SCF ubiquitin ligase complex; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: ASK16 (ARABIDOPSIS SKP1-LIKE 16); protein binding / ubiquitin-protein ligase (TAIR:AT2G03190.1); Has 1088 Blast hits to 1086 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 477; Fungi - 109; Plants - 362; Viruses - 11; Other Eukaryotes - 129 (source: NCBI BLink).  protein_id AT3G25650.1p  transcript_id AT3G25650.1  protein_id AT3G25650.1p  transcript_id AT3G25650.1  
At3g25655	chr3:009337709	0.0	C/9337709-9337969	AT3G25655.1  CDS  gene_syn IDL1, INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 1  gene IDL1  function Similar to Inflorescence Deficient in Abscission (IDA). Involved in floral organ abscission.  go_component endomembrane system|GO:0012505||IEA  go_process floral organ abscission|GO:0010227|18660431|IMP  go_function molecular_function|GO:0003674||ND  product IDL1 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 1)  note INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 1 (IDL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: floral organ abscission; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G25655.1p  transcript_id AT3G25655.1  protein_id AT3G25655.1p  transcript_id AT3G25655.1  
At3g25660	chr3:009341517	0.0	C/9341517-9342044,9340997-9341308,9340728-9340907,9340550-9340644,9340389-9340464,9340234-9340311,9340002-9340145,9339807-9339920,9339640-9339726	AT3G25660.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_process translation|GO:0006412||IEA  go_function carbon-nitrogen ligase activity, with glutamine as amido-N-donor|GO:0016884||IEA  go_function glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity|GO:0050567||ISS  product glutamyl-tRNA(Gln) amidotransferase, putative  note glutamyl-tRNA(Gln) amidotransferase, putative; FUNCTIONS IN: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor; INVOLVED IN: translation; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Amidase signature enzyme (InterPro:IPR000120), Glutamyl-tRNA(Gln) amidotransferase A subunit (InterPro:IPR004412); BEST Arabidopsis thaliana protein match is: AtFAAH (Arabidopsis thaliana fatty acid amide hydrolase); N-(long-chain-acyl)ethanolamine deacylase/ amidase (TAIR:AT5G64440.1); Has 15107 Blast hits to 15078 proteins in 1431 species: Archae - 144; Bacteria - 6140; Metazoa - 510; Fungi - 887; Plants - 208; Viruses - 0; Other Eukaryotes - 7218 (source: NCBI BLink).  protein_id AT3G25660.1p  transcript_id AT3G25660.1  protein_id AT3G25660.1p  transcript_id AT3G25660.1  
At3g25670	chr3:009346095	0.0	C/9346095-9346301,9344532-9345752	AT3G25670.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT1G13230.1); Has 41843 Blast hits to 16308 proteins in 723 species: Archae - 22; Bacteria - 1965; Metazoa - 10838; Fungi - 363; Plants - 26120; Viruses - 0; Other Eukaryotes - 2535 (source: NCBI BLink).  protein_id AT3G25670.1p  transcript_id AT3G25670.1  protein_id AT3G25670.1p  transcript_id AT3G25670.1  
At3g25680	chr3:009349693	0.0	W/9349693-9349936,9350030-9350116,9350209-9350367,9350453-9350541,9350628-9350716,9350807-9350910,9350999-9351086,9351184-9351259,9351349-9351463,9351549-9352080,9352165-9352258	AT3G25680.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: S-layer homology region (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23890.1); Has 2048 Blast hits to 1685 proteins in 255 species: Archae - 25; Bacteria - 194; Metazoa - 982; Fungi - 118; Plants - 132; Viruses - 46; Other Eukaryotes - 551 (source: NCBI BLink).  protein_id AT3G25680.1p  transcript_id AT3G25680.1  protein_id AT3G25680.1p  transcript_id AT3G25680.1  
At3g25690	chr3:009354061	0.0	W/9354061-9354157,9354250-9354314,9354383-9355147,9355223-9356611,9356690-9356821,9356913-9357094,9357170-9357281,9357389-9357532,9357629-9357757	AT3G25690.1  CDS  gene_syn CHLOROPLAST UNUSUAL POSITIONING 1, CHUP1  gene CHUP1  function actin binding protein required for normal chloroplast positioning  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast outer membrane|GO:0009707|18715957|IDA  go_process chloroplast relocation|GO:0009902|18715957|IMP  product CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1)  note CHLOROPLAST UNUSUAL POSITIONING 1 (CHUP1); INVOLVED IN: chloroplast relocation; LOCATED IN: chloroplast outer membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT4G18570.1); Has 82204 Blast hits to 45261 proteins in 1810 species: Archae - 690; Bacteria - 8074; Metazoa - 39526; Fungi - 6397; Plants - 6095; Viruses - 1560; Other Eukaryotes - 19862 (source: NCBI BLink).  protein_id AT3G25690.1p  transcript_id AT3G25690.1  protein_id AT3G25690.1p  transcript_id AT3G25690.1  
At3g25700	chr3:009358937	0.0	W/9358937-9359585,9359892-9360295	AT3G25700.2  CDS  gene_syn T5M7.5  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  product chloroplast nucleoid DNA-binding protein-related  note chloroplast nucleoid DNA-binding protein-related; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT1G31450.1).  protein_id AT3G25700.2p  transcript_id AT3G25700.2  protein_id AT3G25700.2p  transcript_id AT3G25700.2  
At3g25700	chr3:009358937	0.0	W/9358937-9360295	AT3G25700.1  CDS  gene_syn T5M7.5  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  product chloroplast nucleoid DNA-binding protein-related  note chloroplast nucleoid DNA-binding protein-related; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT2G42980.1); Has 1904 Blast hits to 1886 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 523; Fungi - 75; Plants - 1159; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink).  protein_id AT3G25700.1p  transcript_id AT3G25700.1  protein_id AT3G25700.1p  transcript_id AT3G25700.1  
At3g25710	chr3:009369598	0.0	W/9369598-9370086,9370551-9371096	AT3G25710.1  CDS  gene_syn ATAIG1, BASIC HELIX-LOOP-HELIX 32, BHLH32  gene BHLH32  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product BHLH32 (BASIC HELIX-LOOP-HELIX 32); DNA binding / transcription factor  note BASIC HELIX-LOOP-HELIX 32 (BHLH32); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT1G68810.1); Has 1734 Blast hits to 1734 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 375; Fungi - 20; Plants - 1335; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G25710.1p  transcript_id AT3G25710.1  protein_id AT3G25710.1p  transcript_id AT3G25710.1  
At3g25715	chr3:009372374	0.0	C/9372374-9372447	AT3G25715.1  tRNA  gene_syn 60514.TRNA-ILE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ile (anticodon: AAT)  transcript_id AT3G25715.1  
At3g25716	chr3:009373219	0.0	C/9373219-9373413	AT3G25716.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G25716.1p  transcript_id AT3G25716.1  protein_id AT3G25716.1p  transcript_id AT3G25716.1  
At3g25717	chr3:009375472	0.0	C/9375472-9375594	AT3G25717.1  CDS  gene_syn DEVIL 6, DVL6, ROTUNDIFOLIA LIKE 16, RTFL16  gene RTFL16  go_component mitochondrion|GO:0005739||IEA  go_process shoot development|GO:0048367|14871303|ISS  go_function molecular_function|GO:0003674||ND  product RTFL16 (ROTUNDIFOLIA LIKE 16)  note ROTUNDIFOLIA LIKE 16 (RTFL16); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: shoot development; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); BEST Arabidopsis thaliana protein match is: RTFL17 (ROTUNDIFOLIA LIKE 17) (TAIR:AT1G13245.1); Has 46 Blast hits to 46 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G25717.1p  transcript_id AT3G25717.1  protein_id AT3G25717.1p  transcript_id AT3G25717.1  
At3g25719	chr3:009379916	0.0	C/9379916-9380068	AT3G25719.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G25719.1p  transcript_id AT3G25719.1  protein_id AT3G25719.1p  transcript_id AT3G25719.1  
At3g25720	chr3:009380234	0.0	W/9380234-9380285,9380609-9381405	AT3G25720.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10613.1); Has 363 Blast hits to 328 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 363; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G25720.1p  transcript_id AT3G25720.1  protein_id AT3G25720.1p  transcript_id AT3G25720.1  
At3g25725	chr3:009388313	0.0	W/9388313-9393066	AT3G25725.1  mRNA_TE_gene  pseudo  gene_syn K13N2.5  note Transposable element gene, copia-like retrotransposon family, has a 4.3e-213 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At3g25727	chr3:009394303	0.0	C/9394303-9394334,9394104-9394203,9393511-9393840	AT3G25727.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G02520.1); Has 23 Blast hits to 23 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G25727.1p  transcript_id AT3G25727.1  protein_id AT3G25727.1p  transcript_id AT3G25727.1  
At3g25730	chr3:009396505	0.0	W/9396505-9397506	AT3G25730.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: cotyledon, hypocotyl, flower, root, seed; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Transcriptional factor B3 (InterPro:IPR003340), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: RAV1; DNA binding / transcription factor/ transcription repressor (TAIR:AT1G13260.1); Has 4233 Blast hits to 3935 proteins in 213 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4206; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT3G25730.1p  transcript_id AT3G25730.1  protein_id AT3G25730.1p  transcript_id AT3G25730.1  
At3g25740	chr3:009397806	0.0	W/9397806-9397914,9398076-9398109,9398189-9398426,9398500-9398661,9398783-9398824,9398904-9398975,9399047-9399126,9399194-9399294,9399378-9399425,9399505-9399653	AT3G25740.1  CDS  gene_syn MAP1B, MAP1C, METHIONINE AMINOPEPTIDASE 1C  gene MAP1B  function Encodes a plastid localized methionine aminopeptidase. Formerly called MAP1C, now called MAP1B.  go_function aminopeptidase activity|GO:0004177||IEA  go_function metalloexopeptidase activity|GO:0008235||IEA  go_component chloroplast|GO:0009507|15681659|TAS  go_process proteolysis|GO:0006508||ISS  go_process N-terminal protein amino acid modification|GO:0031365|15681659|TAS  go_function metalloexopeptidase activity|GO:0008235||ISS  product MAP1B (METHIONINE AMINOPEPTIDASE 1C); aminopeptidase/ metalloexopeptidase  note METHIONINE AMINOPEPTIDASE 1C (MAP1B); FUNCTIONS IN: metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis, N-terminal protein amino acid modification; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24, structural domain (InterPro:IPR000994), Peptidase M24A, methionine aminopeptidase, subfamily 1 (InterPro:IPR002467), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: MAP1C (METHIONINE AMINOPEPTIDASE 1B); aminopeptidase/ metalloexopeptidase (TAIR:AT1G13270.1); Has 10804 Blast hits to 10787 proteins in 1556 species: Archae - 292; Bacteria - 5901; Metazoa - 295; Fungi - 133; Plants - 131; Viruses - 0; Other Eukaryotes - 4052 (source: NCBI BLink).  protein_id AT3G25740.1p  transcript_id AT3G25740.1  protein_id AT3G25740.1p  transcript_id AT3G25740.1  
At3g25750	chr3:009400955	0.0	W/9400955-9401447,9401535-9402088	AT3G25750.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G26160.1); Has 189 Blast hits to 187 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 189; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G25750.1p  transcript_id AT3G25750.1  protein_id AT3G25750.1p  transcript_id AT3G25750.1  
At3g25760	chr3:009403972	0.0	W/9403972-9404209,9404579-9405105	AT3G25760.1  CDS  gene_syn ALLENE OXIDE CYCLASE 1, AOC1, ERD12, early-responsive to dehydration 12  gene AOC1  function encodes allene oxide cyclase. One of four genes in Arabidopsis that encode this enzyme, which catalyzes an essential step in jasmonic acid biosynthesis. Gene expression is induced during senescence, a process that involves jasmonic acid signalling pathway.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process response to desiccation|GO:0009269|8075396|IEP  go_process response to water deprivation|GO:0009414|8075396|IEP  go_process jasmonic acid biosynthetic process|GO:0009695|11891244|TAS  go_process peptidyl-cysteine S-nitrosylation|GO:0018119|18297659|IDA  go_function allene-oxide cyclase activity|GO:0046423|11891244|ISS  product AOC1 (ALLENE OXIDE CYCLASE 1); allene-oxide cyclase  note ALLENE OXIDE CYCLASE 1 (AOC1); FUNCTIONS IN: allene-oxide cyclase activity; INVOLVED IN: response to water deprivation, response to desiccation, peptidyl-cysteine S-nitrosylation, jasmonic acid biosynthetic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: pollen tube; EXPRESSED DURING: 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Allene oxide cyclase (InterPro:IPR009410); BEST Arabidopsis thaliana protein match is: AOC2 (ALLENE OXIDE CYCLASE 2); allene-oxide cyclase (TAIR:AT3G25770.1); Has 102 Blast hits to 102 proteins in 23 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G25760.1p  transcript_id AT3G25760.1  protein_id AT3G25760.1p  transcript_id AT3G25760.1  
At3g25770	chr3:009406975	0.0	W/9406975-9407209,9407313-9407839	AT3G25770.1  CDS  gene_syn ALLENE OXIDE CYCLASE 2, AOC2  gene AOC2  function Encodes allene oxide cyclase. One of four genes in Arabidopsis that encode this enzyme, which catalyzes an essential step in jasmonic acid biosynthesis. Gene expression is induced during senescence, a process that involves jasmonic acid signalling pathway. Note: Nomenclature for Arabidopsis allene oxide cyclase 2 (AOC2, AT3G25770) gene is based on Stenzel et al. 2003 Plant Molecular Biology 51:895-911. AOC2 (AT3G25770) is also referred to as AOC3 in He et al. 2002 Plant Physiology, 128:876-884.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component stromule|GO:0010319|16923014|IDA  go_process response to cold|GO:0009409|16923014|IEP  go_process response to salt stress|GO:0009651|11351099|IEP  go_process jasmonic acid biosynthetic process|GO:0009695|11891244|TAS  go_function allene-oxide cyclase activity|GO:0046423|11891244|ISS  go_function allene-oxide cyclase activity|GO:0046423|17085685|IDA  product AOC2 (ALLENE OXIDE CYCLASE 2); allene-oxide cyclase  note ALLENE OXIDE CYCLASE 2 (AOC2); FUNCTIONS IN: allene-oxide cyclase activity; INVOLVED IN: response to salt stress, response to cold, jasmonic acid biosynthetic process; LOCATED IN: chloroplast thylakoid membrane, stromule, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: cotyledon, leaf; EXPRESSED DURING: seedling growth, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Allene oxide cyclase (InterPro:IPR009410); BEST Arabidopsis thaliana protein match is: AOC1 (ALLENE OXIDE CYCLASE 1); allene-oxide cyclase (TAIR:AT3G25760.1); Has 102 Blast hits to 102 proteins in 23 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G25770.1p  transcript_id AT3G25770.1  protein_id AT3G25770.1p  transcript_id AT3G25770.1  
At3g25780	chr3:009409362	0.0	W/9409362-9409608,9409880-9410409	AT3G25780.1  CDS  gene_syn ALLENE OXIDE CYCLASE 3, AOC3  gene AOC3  function Encodes allene oxide cyclase, one of the enzymes involved in jasmonic acid biosynthesis. One of four genes in Arabidopsis that encode this enzyme. mRNA expression is upregulated in senescing leaves. Note: Nomenclature for Arabidopsis allene oxide cyclase 3 (AOC3, AT3G25780) gene is based on Stenzel et al. 2003 Plant Molecular Biology 51:895-911. AOC3 (AT3G25780) is also referred to as AOC2 in He et al. 2002 Plant Physiology, 128:876-884.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component plasma membrane|GO:0005886|16618929|IDA  go_process response to fungus|GO:0009620|19220788|IEP  go_process jasmonic acid biosynthetic process|GO:0009695|11891244|TAS  go_function allene-oxide cyclase activity|GO:0046423|11891244|ISS  product AOC3 (ALLENE OXIDE CYCLASE 3); allene-oxide cyclase  note ALLENE OXIDE CYCLASE 3 (AOC3); FUNCTIONS IN: allene-oxide cyclase activity; INVOLVED IN: response to salt stress, response to fungus, jasmonic acid biosynthetic process; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Allene oxide cyclase (InterPro:IPR009410); BEST Arabidopsis thaliana protein match is: AOC4 (ALLENE OXIDE CYCLASE 4); allene-oxide cyclase (TAIR:AT1G13280.1); Has 102 Blast hits to 102 proteins in 23 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G25780.1p  transcript_id AT3G25780.1  protein_id AT3G25780.1p  transcript_id AT3G25780.1  
At3g25790	chr3:009413196	0.0	W/9413196-9413340,9413445-9413740,9414062-9414281,9414395-9414471,9414616-9414951	AT3G25790.1  CDS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677|11118137|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT1G13300.1); Has 895 Blast hits to 885 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 880; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT3G25790.1p  transcript_id AT3G25790.1  protein_id AT3G25790.1p  transcript_id AT3G25790.1  
At3g25795	chr3:009417551	0.0	C/9417551-9418705	AT3G25795.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G25795.1  
At3g25800	chr3:009425144	0.0	C/9425144-9425783,9424954-9425066,9424794-9424873,9424492-9424633,9424310-9424390,9423940-9424044,9423613-9423795,9423400-9423492,9423174-9423317,9423036-9423089	AT3G25800.2  CDS  gene_syn PDF1, PHOSPHATASE 2A REGULATORY SUBUNIT, PP2AA2, PR 65, PROTEIN PHOSPHATASE 2A SUBUNIT A2  gene PP2AA2  function one of three genes encoding the protein phosphatase 2A regulatory subunit  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process regulation of phosphorylation|GO:0042325|7811971|ISS  go_function protein phosphatase type 2A regulator activity|GO:0008601|7811971|ISS  product PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2); protein phosphatase type 2A regulator  note PROTEIN PHOSPHATASE 2A SUBUNIT A2 (PP2AA2); FUNCTIONS IN: protein phosphatase type 2A regulator activity; INVOLVED IN: response to cadmium ion, regulation of phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3); binding / protein phosphatase type 2A regulator (TAIR:AT1G13320.2); Has 2632 Blast hits to 1200 proteins in 185 species: Archae - 14; Bacteria - 52; Metazoa - 1274; Fungi - 464; Plants - 263; Viruses - 0; Other Eukaryotes - 565 (source: NCBI BLink).  protein_id AT3G25800.2p  transcript_id AT3G25800.2  protein_id AT3G25800.2p  transcript_id AT3G25800.2  
At3g25800	chr3:009425144	0.0	C/9425144-9425783,9424954-9425066,9424794-9424873,9424492-9424633,9424310-9424390,9423940-9424044,9423613-9423795,9423400-9423492,9423178-9423317,9423025-9423091,9422822-9422941	AT3G25800.1  CDS  gene_syn PDF1, PHOSPHATASE 2A REGULATORY SUBUNIT, PP2AA2, PR 65, PROTEIN PHOSPHATASE 2A SUBUNIT A2  gene PP2AA2  function one of three genes encoding the protein phosphatase 2A regulatory subunit  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process regulation of phosphorylation|GO:0042325|7811971|ISS  go_function protein phosphatase type 2A regulator activity|GO:0008601|7811971|ISS  product PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2); protein phosphatase type 2A regulator  note PROTEIN PHOSPHATASE 2A SUBUNIT A2 (PP2AA2); FUNCTIONS IN: protein phosphatase type 2A regulator activity; INVOLVED IN: response to cadmium ion, regulation of phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3); binding / protein phosphatase type 2A regulator (TAIR:AT1G13320.1); Has 2240 Blast hits to 1322 proteins in 186 species: Archae - 14; Bacteria - 62; Metazoa - 1252; Fungi - 260; Plants - 192; Viruses - 0; Other Eukaryotes - 460 (source: NCBI BLink).  protein_id AT3G25800.1p  transcript_id AT3G25800.1  protein_id AT3G25800.1p  transcript_id AT3G25800.1  
At3g25805	chr3:009427849	0.0	C/9427849-9428169,9427220-9427313,9427094-9427131,9426872-9427007,9426354-9426772	AT3G25805.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 68 Blast hits to 68 proteins in 32 species: Archae - 0; Bacteria - 46; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G25805.1p  transcript_id AT3G25805.1  protein_id AT3G25805.1p  transcript_id AT3G25805.1  
At3g25810	chr3:009430805	0.0	W/9430805-9431014,9431396-9431675,9431776-9432160,9432271-9432489,9432852-9432990,9433083-9433334,9433533-9433844	AT3G25810.1  CDS  go_component plastid|GO:0009536|12566586|IC  go_process monoterpene biosynthetic process|GO:0043693|12566586|IDA  go_function sesquiterpene synthase activity|GO:0010334|12566586|IDA  go_function (R)-limonene synthase activity|GO:0034002|12566586|IDA  go_function (E)-beta-ocimene synthase activity|GO:0034768|12566586|IDA  go_function pinene synthase activity|GO:0050550|12566586|IDA  go_function myrcene synthase activity|GO:0050551|12566586|IDA  go_function (4S)-limonene synthase activity|GO:0050552|12566586|IDA  go_function sabinene synthase activity|GO:0080015|12566586|IDA  product myrcene/ocimene synthase, putative  note myrcene/ocimene synthase, putative; FUNCTIONS IN: in 7 functions; INVOLVED IN: monoterpene biosynthetic process; LOCATED IN: plastid; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: ATTPS-CIN (terpene synthase-like sequence-1,8-cineole); (E)-beta-ocimene synthase/ myrcene synthase (TAIR:AT3G25830.1); Has 1104 Blast hits to 1090 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1100; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G25810.1p  transcript_id AT3G25810.1  protein_id AT3G25810.1p  transcript_id AT3G25810.1  
At3g25815	chr3:009434959	0.0	C/9434959-9438429	AT3G25815.1  mRNA_TE_gene  pseudo  gene_syn K13N2.18  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 3.7e-34 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At3g25820	chr3:009439282	0.0	W/9439282-9439491,9439617-9439893,9439990-9440371,9440465-9440683,9441149-9441287,9441360-9441611,9441730-9442053	AT3G25820.1  CDS  gene_syn ATTPS-CIN, terpene synthase-like sequence-1,8-cineole  gene ATTPS-CIN  function Encodes the monoterpene 1,8-cineole synthase, atTPS-Cin. This polypeptide was also shown to synthesize other monoterpenes albeit in minor quantities. The same polypeptide is encoded at two different loci, the result of gene duplication: at3g25820 and at3g25830.  go_process monoterpenoid biosynthetic process|GO:0016099|15299125|IDA  go_function (E)-beta-ocimene synthase activity|GO:0034768|15299125|IDA  go_function myrcene synthase activity|GO:0050551|15299125|IDA  product ATTPS-CIN (terpene synthase-like sequence-1,8-cineole); (E)-beta-ocimene synthase/ myrcene synthase  note terpene synthase-like sequence-1,8-cineole (ATTPS-CIN); FUNCTIONS IN: myrcene synthase activity, (E)-beta-ocimene synthase activity; INVOLVED IN: monoterpenoid biosynthetic process; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: ATTPS-CIN (terpene synthase-like sequence-1,8-cineole); (E)-beta-ocimene synthase/ myrcene synthase (TAIR:AT3G25830.1); Has 1098 Blast hits to 1085 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1095; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G25820.1p  transcript_id AT3G25820.1  protein_id AT3G25820.1p  transcript_id AT3G25820.1  
At3g25826	chr3:009444551	0.0	C/9444551-9446811	AT3G25826.1  mRNA_TE_gene  pseudo  gene_syn K9I22.2  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.1e-27 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At3g25830	chr3:009447545	0.0	W/9447545-9447754,9447880-9448156,9448253-9448634,9448728-9448946,9449412-9449550,9449623-9449874,9449993-9450316	AT3G25830.1  CDS  gene_syn ATTPS-CIN, terpene synthase-like sequence-1,8-cineole  gene ATTPS-CIN  function Encodes the monoterpene 1,8-cineole synthase, atTPS-Cin. This polypeptide was also shown to synthesize other monoterpenes albeit in minor quantities. The same polypeptide is encoded at two different loci, the result of gene duplication: at3g25820 and at3g25830.  go_process monoterpenoid biosynthetic process|GO:0016099|15299125|IDA  go_process monoterpenoid biosynthetic process|GO:0016099||ISS  go_function (E)-beta-ocimene synthase activity|GO:0034768|15299125|IDA  go_function myrcene synthase activity|GO:0050551|15299125|IDA  product ATTPS-CIN (terpene synthase-like sequence-1,8-cineole); (E)-beta-ocimene synthase/ myrcene synthase  note terpene synthase-like sequence-1,8-cineole (ATTPS-CIN); FUNCTIONS IN: myrcene synthase activity, (E)-beta-ocimene synthase activity; INVOLVED IN: monoterpenoid biosynthetic process; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: ATTPS-CIN (terpene synthase-like sequence-1,8-cineole); (E)-beta-ocimene synthase/ myrcene synthase (TAIR:AT3G25820.1); Has 1098 Blast hits to 1085 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1095; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G25830.1p  transcript_id AT3G25830.1  protein_id AT3G25830.1p  transcript_id AT3G25830.1  
At3g25840	chr3:009455832	0.0	C/9455832-9456322,9455550-9455737,9455084-9455289,9454866-9454934,9454601-9454676,9454348-9454504,9453956-9454247,9453766-9453880,9453519-9453682,9453270-9453344,9452993-9453181	AT3G25840.2  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component nucleus|GO:0005634|15469496|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function ATP binding|GO:0005524||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G13350.1); Has 106515 Blast hits to 80605 proteins in 1898 species: Archae - 88; Bacteria - 6982; Metazoa - 51323; Fungi - 12285; Plants - 9390; Viruses - 703; Other Eukaryotes - 25744 (source: NCBI BLink).  protein_id AT3G25840.2p  transcript_id AT3G25840.2  protein_id AT3G25840.2p  transcript_id AT3G25840.2  
At3g25840	chr3:009457090	0.0	C/9457090-9457446,9455832-9456751,9455550-9455737,9455084-9455289,9454866-9454934,9454601-9454676,9454348-9454504,9453956-9454247,9453766-9453880,9453519-9453682,9453270-9453344,9452993-9453181	AT3G25840.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component nucleus|GO:0005634|15469496|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function ATP binding|GO:0005524||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G13350.1); Has 132242 Blast hits to 94068 proteins in 2209 species: Archae - 141; Bacteria - 10146; Metazoa - 64521; Fungi - 15048; Plants - 10889; Viruses - 745; Other Eukaryotes - 30752 (source: NCBI BLink).  protein_id AT3G25840.1p  transcript_id AT3G25840.1  protein_id AT3G25840.1p  transcript_id AT3G25840.1  
At3g25850	chr3:009458178	0.0	C/9458178-9458954	AT3G25850.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT5G44770.1); Has 776 Blast hits to 427 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 766; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G25850.1p  transcript_id AT3G25850.1  protein_id AT3G25850.1p  transcript_id AT3G25850.1  
At3g25855	chr3:009460256	0.0	C/9460256-9460267,9460086-9460170,9459608-9459849	AT3G25855.1  CDS  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, LP.12 twelve leaves visible; Has 46 Blast hits to 46 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G25855.1p  transcript_id AT3G25855.1  protein_id AT3G25855.1p  transcript_id AT3G25855.1  
At3g25860	chr3:009460632	0.0	W/9460632-9461534,9461619-9461810,9461933-9462020,9462108-9462178,9462261-9462344,9462481-9462585	AT3G25860.1  CDS  gene_syn DIHYDROLIPOAMIDE S-ACETYLTRANSFERASE, LTA2, PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, PLE2  gene LTA2  function Nuclear encoded dihydrolipoamide S-acetyltransferase (LTA2) that encodes teh Pyruvate Decarboxylase E2 subunit. Mutant has embryo defect.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component chloroplast stroma|GO:0009570|10364395|IDA  go_process acetyl-CoA biosynthetic process from pyruvate|GO:0006086|10364395|TAS  go_process metabolic process|GO:0008152||ISS  go_function dihydrolipoyllysine-residue acetyltransferase activity|GO:0004742|10364395|IDA  go_function dihydrolipoyllysine-residue acetyltransferase activity|GO:0004742||ISS  product LTA2; dihydrolipoyllysine-residue acetyltransferase  note LTA2; FUNCTIONS IN: dihydrolipoyllysine-residue acetyltransferase activity; INVOLVED IN: metabolic process, acetyl-CoA biosynthetic process from pyruvate; LOCATED IN: cytosolic ribosome, chloroplast stroma, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), E3 binding (InterPro:IPR004167), 2-oxoacid dehydrogenase acyltransferase, catalytic domain (InterPro:IPR001078), Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: EMB3003 (embryo defective 3003); acyltransferase/ dihydrolipoyllysine-residue acetyltransferase/ protein binding (TAIR:AT1G34430.1); Has 17317 Blast hits to 15250 proteins in 1356 species: Archae - 40; Bacteria - 7253; Metazoa - 1064; Fungi - 626; Plants - 284; Viruses - 32; Other Eukaryotes - 8018 (source: NCBI BLink).  protein_id AT3G25860.1p  transcript_id AT3G25860.1  protein_id AT3G25860.1p  transcript_id AT3G25860.1  
At3g25870	chr3:009463665	0.0	C/9463665-9464177	AT3G25870.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13360.1); Has 19 Blast hits to 19 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G25870.1p  transcript_id AT3G25870.1  protein_id AT3G25870.1p  transcript_id AT3G25870.1  
At3g25880	chr3:009469987	0.0	C/9469987-9470033,9469713-9469875	AT3G25880.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  product auxin-resistance protein, putative  note auxin-resistance protein, putative; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: response to auxin stimulus, metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: AXR1 (AUXIN RESISTANT 1); small protein activating enzyme (TAIR:AT1G05180.1); Has 243 Blast hits to 243 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 138; Fungi - 61; Plants - 31; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT3G25880.1p  transcript_id AT3G25880.1  protein_id AT3G25880.1p  transcript_id AT3G25880.1  
At3g25882	chr3:009470521	0.0	C/9470521-9470889	AT3G25882.1  CDS  gene_syn NIM1-INTERACTING 2, NIMIN-2  gene NIMIN-2  function encodes a kinase that physically interacts with NPR1/NIM1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NIMIN-2 (NIM1-INTERACTING 2)  note NIM1-INTERACTING 2 (NIMIN-2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G25882.1p  transcript_id AT3G25882.1  protein_id AT3G25882.1p  transcript_id AT3G25882.1  
At3g25890	chr3:009476052	0.0	W/9476052-9477050	AT3G25890.1  CDS  function encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT1G68550.2); Has 2809 Blast hits to 2805 proteins in 172 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2803; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G25890.1p  transcript_id AT3G25890.1  protein_id AT3G25890.1p  transcript_id AT3G25890.1  
At3g25890	chr3:009476052	0.0	W/9476052-9477050	AT3G25890.2  CDS  function encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT1G68550.2); Has 2809 Blast hits to 2805 proteins in 172 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2803; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G25890.2p  transcript_id AT3G25890.2  protein_id AT3G25890.2p  transcript_id AT3G25890.2  
At3g25900	chr3:009480964	0.0	W/9480964-9481134,9481401-9481457,9481649-9481854,9481965-9482298,9482382-9482453,9482544-9482684	AT3G25900.1  CDS  gene_syn ATHMT-1, HMT-1  gene HMT-1  go_component cellular_component|GO:0005575||ND  go_process methionine biosynthetic process|GO:0009086|10747987|IDA  go_function homocysteine S-methyltransferase activity|GO:0008898|10747987|IDA  go_function homocysteine S-methyltransferase activity|GO:0008898||ISS  product HMT-1; homocysteine S-methyltransferase  note HMT-1; FUNCTIONS IN: homocysteine S-methyltransferase activity; INVOLVED IN: methionine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Homocysteine S-methyltransferase (InterPro:IPR003726); BEST Arabidopsis thaliana protein match is: HMT3; homocysteine S-methyltransferase (TAIR:AT3G22740.1); Has 4724 Blast hits to 4720 proteins in 1035 species: Archae - 4; Bacteria - 2227; Metazoa - 332; Fungi - 97; Plants - 98; Viruses - 0; Other Eukaryotes - 1966 (source: NCBI BLink).  protein_id AT3G25900.1p  transcript_id AT3G25900.1  protein_id AT3G25900.1p  transcript_id AT3G25900.1  
At3g25900	chr3:009480964	0.0	W/9480964-9481134,9481401-9481457,9481649-9481854,9481965-9482302,9482382-9482416	AT3G25900.2  CDS  gene_syn ATHMT-1, HMT-1  gene HMT-1  go_component cellular_component|GO:0005575||ND  go_process methionine biosynthetic process|GO:0009086|10747987|IDA  go_function homocysteine S-methyltransferase activity|GO:0008898|10747987|IDA  go_function homocysteine S-methyltransferase activity|GO:0008898||ISS  product HMT-1; homocysteine S-methyltransferase  note HMT-1; FUNCTIONS IN: homocysteine S-methyltransferase activity; INVOLVED IN: methionine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Homocysteine S-methyltransferase (InterPro:IPR003726); BEST Arabidopsis thaliana protein match is: HMT3; homocysteine S-methyltransferase (TAIR:AT3G22740.1); Has 3955 Blast hits to 3951 proteins in 983 species: Archae - 4; Bacteria - 1970; Metazoa - 318; Fungi - 91; Plants - 95; Viruses - 0; Other Eukaryotes - 1477 (source: NCBI BLink).  protein_id AT3G25900.2p  transcript_id AT3G25900.2  protein_id AT3G25900.2p  transcript_id AT3G25900.2  
At3g25905	chr3:009486348	0.0	C/9486348-9486623	AT3G25905.1  CDS  gene_syn CLAVATA3/ESR-RELATED 27, CLE27  gene CLE27  function Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.  go_component apoplast|GO:0048046|11457943|RCA  go_process signal transduction|GO:0007165||ISS  go_function receptor binding|GO:0005102||ISS  go_function protein binding|GO:0005515|11457943|ISS  product CLE27 (CLAVATA3/ESR-RELATED 27); protein binding / receptor binding  note CLAVATA3/ESR-RELATED 27 (CLE27); FUNCTIONS IN: protein binding, receptor binding; INVOLVED IN: signal transduction; LOCATED IN: apoplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G25905.1p  transcript_id AT3G25905.1  protein_id AT3G25905.1p  transcript_id AT3G25905.1  
At3g25910	chr3:009489836	0.0	W/9489836-9490954	AT3G25910.1  CDS  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24740.2); Has 1740 Blast hits to 672 proteins in 82 species: Archae - 0; Bacteria - 20; Metazoa - 1244; Fungi - 71; Plants - 255; Viruses - 6; Other Eukaryotes - 144 (source: NCBI BLink).  protein_id AT3G25910.1p  transcript_id AT3G25910.1  protein_id AT3G25910.1p  transcript_id AT3G25910.1  
At3g25920	chr3:009492475	0.0	C/9492475-9492558,9492040-9492403,9491596-9491747,9491268-9491501	AT3G25920.1  CDS  gene_syn MPE11.32, RIBOSOMAL PROTEIN CL15, RPL15  gene RPL15  function encodes a plastid ribosomal protein CL15, a constituent of the large subunit of the ribosomal complex  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component plastid large ribosomal subunit|GO:0000311|1581570|TAS  go_process translation|GO:0006412|1581570|TAS  go_function structural constituent of ribosome|GO:0003735|1581570|ISS  product RPL15; structural constituent of ribosome  note RPL15; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: plastid large ribosomal subunit, chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L15, bacterial-type (InterPro:IPR005749), Ribosomal protein L15 (InterPro:IPR001196); BEST Arabidopsis thaliana protein match is: ribosomal protein L15 family protein (TAIR:AT5G64670.1); Has 5186 Blast hits to 5186 proteins in 1470 species: Archae - 11; Bacteria - 2936; Metazoa - 65; Fungi - 59; Plants - 52; Viruses - 0; Other Eukaryotes - 2063 (source: NCBI BLink).  protein_id AT3G25920.1p  transcript_id AT3G25920.1  protein_id AT3G25920.1p  transcript_id AT3G25920.1  
At3g25930	chr3:009493673	0.0	C/9493673-9493871,9493462-9493553,9493185-9493297,9493032-9493092	AT3G25930.1  CDS  go_process response to stress|GO:0006950||IEA  go_component cellular_component|GO:0005575||ND  go_process response to stress|GO:0006950||ISS  go_function molecular_function|GO:0003674||ND  product universal stress protein (USP) family protein  note universal stress protein (USP) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729); BEST Arabidopsis thaliana protein match is: universal stress protein (USP) family protein (TAIR:AT1G68300.1); Has 79 Blast hits to 79 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G25930.1p  transcript_id AT3G25930.1  protein_id AT3G25930.1p  transcript_id AT3G25930.1  
At3g25940	chr3:009495104	0.0	W/9495104-9495221,9495314-9495354,9495568-9495636,9495722-9495778,9495868-9495942	AT3G25940.1  CDS  go_process regulation of transcription|GO:0045449||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function transcription regulator activity|GO:0030528||IEA  go_component nucleus|GO:0005634||ISS  go_process RNA elongation|GO:0006354||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcription factor S-II (TFIIS) domain-containing protein  note transcription factor S-II (TFIIS) domain-containing protein; FUNCTIONS IN: transcription factor activity, transcription regulator activity, DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: RNA elongation, regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, TFIIS-type (InterPro:IPR001222); Has 677 Blast hits to 677 proteins in 189 species: Archae - 101; Bacteria - 0; Metazoa - 272; Fungi - 122; Plants - 58; Viruses - 3; Other Eukaryotes - 121 (source: NCBI BLink).  protein_id AT3G25940.1p  transcript_id AT3G25940.1  protein_id AT3G25940.1p  transcript_id AT3G25940.1  
At3g25950	chr3:009496356	0.0	W/9496356-9497111	AT3G25950.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: stem, male gametophyte, sepal, pedicel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related (TAIR:AT5G14280.1); Has 41 Blast hits to 41 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G25950.1p  transcript_id AT3G25950.1  protein_id AT3G25950.1p  transcript_id AT3G25950.1  
At3g25960	chr3:009498439	0.0	W/9498439-9499932	AT3G25960.1  CDS  go_process glycolysis|GO:0006096||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function catalytic activity|GO:0003824||IEA  go_function pyruvate kinase activity|GO:0004743||IEA  go_function potassium ion binding|GO:0030955||IEA  go_process glycolysis|GO:0006096||ISS  go_function pyruvate kinase activity|GO:0004743||ISS  product pyruvate kinase, putative  note pyruvate kinase, putative; FUNCTIONS IN: pyruvate kinase activity, magnesium ion binding, potassium ion binding, catalytic activity; INVOLVED IN: glycolysis; EXPRESSED IN: stem, seed, leaf; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pyruvate kinase, C-terminal-like (InterPro:IPR015795), Pyruvate kinase, active site (InterPro:IPR018209), Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), Pyruvate kinase, alpha/beta (InterPro:IPR015794), Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate kinase (InterPro:IPR001697), Pyruvate kinase, barrel (InterPro:IPR015793); BEST Arabidopsis thaliana protein match is: pyruvate kinase, putative (TAIR:AT3G55650.1); Has 6878 Blast hits to 6803 proteins in 1517 species: Archae - 99; Bacteria - 3240; Metazoa - 490; Fungi - 168; Plants - 284; Viruses - 0; Other Eukaryotes - 2597 (source: NCBI BLink).  protein_id AT3G25960.1p  transcript_id AT3G25960.1  protein_id AT3G25960.1p  transcript_id AT3G25960.1  
At3g25970	chr3:009500116	0.0	C/9500116-9502056	AT3G25970.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G13650.1); Has 14785 Blast hits to 4784 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 27; Plants - 14377; Viruses - 0; Other Eukaryotes - 259 (source: NCBI BLink).  protein_id AT3G25970.1p  transcript_id AT3G25970.1  protein_id AT3G25970.1p  transcript_id AT3G25970.1  
At3g25980	chr3:009503232	0.0	W/9503232-9503307,9503396-9503411,9503513-9503643,9503726-9503846,9503941-9504044,9504140-9504261,9504343-9504402	AT3G25980.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process mitosis|GO:0007067||IEA  go_process mitotic cell cycle spindle assembly checkpoint|GO:0007094||ISS  go_function DNA binding|GO:0003677||ISS  product mitotic spindle checkpoint protein, putative (MAD2)  note mitotic spindle checkpoint protein, putative (MAD2); FUNCTIONS IN: DNA binding; INVOLVED IN: mitosis, mitotic cell cycle spindle assembly checkpoint; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding HORMA (InterPro:IPR003511); Has 426 Blast hits to 425 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 252; Fungi - 113; Plants - 29; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT3G25980.1p  transcript_id AT3G25980.1  protein_id AT3G25980.1p  transcript_id AT3G25980.1  
At3g25990	chr3:009506181	0.0	C/9506181-9506703,9505861-9505899,9505453-9505581,9505126-9505350,9504846-9505048	AT3G25990.1  CDS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product DNA-binding protein GT-1-related  note DNA-binding protein GT-1-related; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: DNA binding protein GT-1 (TAIR:AT1G13450.1); Has 409 Blast hits to 346 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 124; Fungi - 0; Plants - 285; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G25990.1p  transcript_id AT3G25990.1  protein_id AT3G25990.1p  transcript_id AT3G25990.1  
At3g26000	chr3:009507661	0.0	C/9507661-9508542,9507042-9507521	AT3G26000.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: F-box family protein-related (TAIR:AT3G27290.1); Has 60 Blast hits to 60 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G26000.1p  transcript_id AT3G26000.1  protein_id AT3G26000.1p  transcript_id AT3G26000.1  
At3g26010	chr3:009511901	0.0	W/9511901-9513145	AT3G26010.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G49990.1); Has 249 Blast hits to 248 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 249; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G26010.1p  transcript_id AT3G26010.1  protein_id AT3G26010.1p  transcript_id AT3G26010.1  
At3g26020	chr3:009514363	0.0	W/9514363-9515298,9515386-9515538,9515933-9516076,9516280-9516585	AT3G26020.3  CDS  go_component protein phosphatase type 2A complex|GO:0000159||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein phosphatase type 2A regulator activity|GO:0008601||IEA  go_component protein phosphatase type 2A complex|GO:0000159||ISS  go_process signal transduction|GO:0007165||ISS  go_function protein phosphatase type 2A regulator activity|GO:0008601||ISS  product serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B , putative  note serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B , putative; FUNCTIONS IN: protein phosphatase type 2A regulator activity; INVOLVED IN: signal transduction; LOCATED IN: protein phosphatase type 2A complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2A, regulatory B subunit, B56 (InterPro:IPR002554); BEST Arabidopsis thaliana protein match is: serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B , putative (TAIR:AT1G13460.2).  protein_id AT3G26020.3p  transcript_id AT3G26020.3  protein_id AT3G26020.3p  transcript_id AT3G26020.3  
At3g26020	chr3:009514363	0.0	W/9514363-9515298,9515386-9515589,9515722-9515754,9515966-9516076,9516280-9516585	AT3G26020.4  CDS  go_component protein phosphatase type 2A complex|GO:0000159||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein phosphatase type 2A regulator activity|GO:0008601||IEA  go_component protein phosphatase type 2A complex|GO:0000159||ISS  go_process signal transduction|GO:0007165||ISS  go_function protein phosphatase type 2A regulator activity|GO:0008601||ISS  product serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B , putative  note serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B , putative; FUNCTIONS IN: protein phosphatase type 2A regulator activity; INVOLVED IN: signal transduction; LOCATED IN: protein phosphatase type 2A complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2A, regulatory B subunit, B56 (InterPro:IPR002554); BEST Arabidopsis thaliana protein match is: serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B , putative (TAIR:AT1G13460.2).  protein_id AT3G26020.4p  transcript_id AT3G26020.4  protein_id AT3G26020.4p  transcript_id AT3G26020.4  
At3g26020	chr3:009514363	0.0	W/9514363-9515589,9516280-9516585	AT3G26020.1  CDS  go_component protein phosphatase type 2A complex|GO:0000159||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein phosphatase type 2A regulator activity|GO:0008601||IEA  go_component protein phosphatase type 2A complex|GO:0000159||ISS  go_process signal transduction|GO:0007165||ISS  go_function protein phosphatase type 2A regulator activity|GO:0008601||ISS  product serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B , putative  note serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B , putative; FUNCTIONS IN: protein phosphatase type 2A regulator activity; INVOLVED IN: signal transduction; LOCATED IN: protein phosphatase type 2A complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2A, regulatory B subunit, B56 (InterPro:IPR002554); BEST Arabidopsis thaliana protein match is: serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B , putative (TAIR:AT1G13460.2); Has 1159 Blast hits to 1024 proteins in 145 species: Archae - 0; Bacteria - 6; Metazoa - 613; Fungi - 117; Plants - 156; Viruses - 0; Other Eukaryotes - 267 (source: NCBI BLink).  protein_id AT3G26020.1p  transcript_id AT3G26020.1  protein_id AT3G26020.1p  transcript_id AT3G26020.1  
At3g26020	chr3:009514363	0.0	W/9514363-9515589,9516280-9516585	AT3G26020.2  CDS  go_component protein phosphatase type 2A complex|GO:0000159||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein phosphatase type 2A regulator activity|GO:0008601||IEA  go_component protein phosphatase type 2A complex|GO:0000159||ISS  go_process signal transduction|GO:0007165||ISS  go_function protein phosphatase type 2A regulator activity|GO:0008601||ISS  product serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B , putative  note serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B , putative; FUNCTIONS IN: protein phosphatase type 2A regulator activity; INVOLVED IN: signal transduction; LOCATED IN: protein phosphatase type 2A complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2A, regulatory B subunit, B56 (InterPro:IPR002554); BEST Arabidopsis thaliana protein match is: serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B , putative (TAIR:AT1G13460.2); Has 1159 Blast hits to 1024 proteins in 145 species: Archae - 0; Bacteria - 6; Metazoa - 613; Fungi - 117; Plants - 156; Viruses - 0; Other Eukaryotes - 267 (source: NCBI BLink).  protein_id AT3G26020.2p  transcript_id AT3G26020.2  protein_id AT3G26020.2p  transcript_id AT3G26020.2  
At3g26030	chr3:009517741	0.0	W/9517741-9518868,9518955-9519260	AT3G26030.1  CDS  gene_syn ATB  DELTA, MPE11.23  gene ATB  DELTA  function protein phosphatase 2A regulatory subunit isoform B  delta  go_process signal transduction|GO:0007165||IEA  go_function protein phosphatase type 2A regulator activity|GO:0008601||IEA  go_component protein phosphatase type 2A complex|GO:0000159||ISS  go_component nucleolus|GO:0005730|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process signal transduction|GO:0007165||ISS  go_function protein phosphatase type 2A regulator activity|GO:0008601||ISS  product ATB  DELTA; protein phosphatase type 2A regulator  note ATB  DELTA; FUNCTIONS IN: protein phosphatase type 2A regulator activity; INVOLVED IN: signal transduction; LOCATED IN: nucleolus, protein phosphatase type 2A complex, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2A, regulatory B subunit, B56 (InterPro:IPR002554); BEST Arabidopsis thaliana protein match is: serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B , putative (TAIR:AT3G26020.2); Has 867 Blast hits to 849 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 491; Fungi - 106; Plants - 156; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).  protein_id AT3G26030.1p  transcript_id AT3G26030.1  protein_id AT3G26030.1p  transcript_id AT3G26030.1  
At3g26040	chr3:009519741	0.0	W/9519741-9521069	AT3G26040.1  CDS  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT1G24420.1); Has 1260 Blast hits to 1255 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 46; Plants - 1214; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G26040.1p  transcript_id AT3G26040.1  protein_id AT3G26040.1p  transcript_id AT3G26040.1  
At3g26050	chr3:009521907	0.0	W/9521907-9521978,9522124-9522537,9522610-9523128,9523207-9523268,9523369-9523440,9523591-9523693,9523802-9523930,9524011-9524241	AT3G26050.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Targeting for Xklp2 (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27350.1); Has 5651 Blast hits to 1894 proteins in 233 species: Archae - 0; Bacteria - 757; Metazoa - 997; Fungi - 564; Plants - 231; Viruses - 18; Other Eukaryotes - 3084 (source: NCBI BLink).  protein_id AT3G26050.1p  transcript_id AT3G26050.1  protein_id AT3G26050.1p  transcript_id AT3G26050.1  
At3g26060	chr3:009524807	0.0	W/9524807-9525010,9525492-9525629,9525722-9525811,9525905-9526123	AT3G26060.1  CDS  gene_syn ATPRX Q  gene ATPRX Q  function encodes periredoxin Q which decomposes peroxides and plays a role in the protection of the photosynthetic apparatus  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_process cell redox homeostasis|GO:0045454||IEA  go_component chloroplast stromal thylakoid|GO:0009533|15322131|IDA  go_component chloroplast thylakoid membrane|GO:0009535|16507087|IDA  go_function antioxidant activity|GO:0016209||ISS  go_function peroxiredoxin activity|GO:0051920|16507087|IDA  product ATPRX Q; antioxidant/ peroxiredoxin  note ATPRX Q; FUNCTIONS IN: peroxiredoxin activity, antioxidant activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast stromal thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: 2-Cys Prx B (2-Cysteine peroxiredoxin B); antioxidant/ peroxiredoxin (TAIR:AT5G06290.1); Has 11635 Blast hits to 11635 proteins in 1563 species: Archae - 382; Bacteria - 6588; Metazoa - 725; Fungi - 257; Plants - 276; Viruses - 0; Other Eukaryotes - 3407 (source: NCBI BLink).  protein_id AT3G26060.1p  transcript_id AT3G26060.1  protein_id AT3G26060.1p  transcript_id AT3G26060.1  
At3g26070	chr3:009526904	0.0	W/9526904-9527206,9527324-9527437,9527528-9527623,9527791-9527865,9527969-9528036,9528127-9528199	AT3G26070.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_function structural molecule activity|GO:0005198||IEA  go_process biological_process|GO:0008150||ND  go_function structural molecule activity|GO:0005198||ISS  product plastid-lipid associated protein PAP / fibrillin family protein  note plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, plastoglobule; CONTAINS InterPro DOMAIN/s: PAP fibrillin (InterPro:IPR006843); BEST Arabidopsis thaliana protein match is: plastid-lipid associated protein PAP / fibrillin family protein (TAIR:AT3G26080.1); Has 335 Blast hits to 333 proteins in 69 species: Archae - 0; Bacteria - 86; Metazoa - 0; Fungi - 0; Plants - 212; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT3G26070.1p  transcript_id AT3G26070.1  protein_id AT3G26070.1p  transcript_id AT3G26070.1  
At3g26080	chr3:009528998	0.0	W/9528998-9529273,9529386-9529499,9529587-9529682,9529994-9530068,9530174-9530244,9530332-9530404	AT3G26080.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_function structural molecule activity|GO:0005198||IEA  go_process biological_process|GO:0008150||ND  go_function structural molecule activity|GO:0005198||ISS  product plastid-lipid associated protein PAP / fibrillin family protein  note plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; CONTAINS InterPro DOMAIN/s: PAP fibrillin (InterPro:IPR006843); BEST Arabidopsis thaliana protein match is: plastid-lipid associated protein PAP / fibrillin family protein (TAIR:AT3G26070.1); Has 261 Blast hits to 261 proteins in 62 species: Archae - 0; Bacteria - 74; Metazoa - 0; Fungi - 0; Plants - 182; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G26080.1p  transcript_id AT3G26080.1  protein_id AT3G26080.1p  transcript_id AT3G26080.1  
At3g26085	chr3:009530842	0.0	W/9530842-9530911,9531002-9531042,9531130-9531384,9531461-9531521,9531617-9531741,9531823-9531885,9531970-9532094,9532256-9532397	AT3G26085.1  CDS  go_component membrane|GO:0016020||IEA  go_process proteolysis|GO:0006508||ISS  go_function molecular_function|GO:0003674||ND  product CAAX amino terminal protease family protein  note CAAX amino terminal protease family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675); Has 720 Blast hits to 720 proteins in 241 species: Archae - 5; Bacteria - 612; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT3G26085.1p  transcript_id AT3G26085.1  protein_id AT3G26085.1p  transcript_id AT3G26085.1  
At3g26085	chr3:009530842	0.0	W/9530842-9530911,9531002-9531384,9531461-9531521,9531617-9531741,9531823-9531885,9531970-9532094,9532256-9532397	AT3G26085.2  CDS  go_component membrane|GO:0016020||IEA  go_process proteolysis|GO:0006508||ISS  go_function molecular_function|GO:0003674||ND  product CAAX amino terminal protease family protein  note CAAX amino terminal protease family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675); Has 720 Blast hits to 720 proteins in 241 species: Archae - 5; Bacteria - 612; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT3G26085.2p  transcript_id AT3G26085.2  protein_id AT3G26085.2p  transcript_id AT3G26085.2  
At3g26090	chr3:009532883	0.0	W/9532883-9532962,9533399-9533519,9533615-9533678,9533760-9533844,9533949-9534022,9534117-9534397,9534483-9534721,9534799-9534923,9535013-9535134,9535222-9535410	AT3G26090.1  CDS  gene_syn ATRGS1, REGULATOR OF G-PROTEIN SIGNALING 1, RGS1  gene RGS1  function Encodes ArRGS1, a putative membrane receptor for D-glucose. Also functions as a regulator of G-protein signaling. Has GTPase-accelerating activity. Regulates the activity of AtGPA1. Lines over-expressing the gene are more tolerant to dehydration and root elongation. These phenotypes are dependent on ABA.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component nucleus|GO:0005634|16714312|IDA  go_process response to water deprivation|GO:0009414|16714312|IMP  go_process response to abscisic acid stimulus|GO:0009737|16714312|IMP  go_process response to glucose stimulus|GO:0009749|17951432|IMP  go_function G-protein coupled receptor activity|GO:0004930|17951432|IMP  product RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptor  note REGULATOR OF G-PROTEIN SIGNALING 1 (RGS1); FUNCTIONS IN: G-protein coupled receptor activity; INVOLVED IN: response to water deprivation, response to abscisic acid stimulus, response to glucose stimulus; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of G protein signalling superfamily (InterPro:IPR016137), Regulator of G protein signalling (InterPro:IPR000342); Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G26090.1p  transcript_id AT3G26090.1  protein_id AT3G26090.1p  transcript_id AT3G26090.1  
At3g26100	chr3:009538063	0.0	W/9538063-9538281,9538377-9538726,9538811-9539212,9539425-9539809,9539907-9540149	AT3G26100.2  CDS  go_process biological_process|GO:0008150||ND  go_function Ran GTPase binding|GO:0008536||ISS  product regulator of chromosome condensation (RCC1) family protein  note regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: Ran GTPase binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: regulator of chromosome condensation (RCC1) family protein (TAIR:AT3G15430.2); Has 13018 Blast hits to 3813 proteins in 266 species: Archae - 62; Bacteria - 1274; Metazoa - 6169; Fungi - 625; Plants - 1234; Viruses - 2; Other Eukaryotes - 3652 (source: NCBI BLink).  protein_id AT3G26100.2p  transcript_id AT3G26100.2  protein_id AT3G26100.2p  transcript_id AT3G26100.2  
At3g26100	chr3:009538458	0.0	W/9538458-9538726,9538811-9539212,9539425-9539809,9539907-9540149	AT3G26100.1  CDS  go_process biological_process|GO:0008150||ND  go_function Ran GTPase binding|GO:0008536||ISS  product regulator of chromosome condensation (RCC1) family protein  note regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: Ran GTPase binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: regulator of chromosome condensation (RCC1) family protein (TAIR:AT3G15430.2); Has 13016 Blast hits to 3813 proteins in 266 species: Archae - 62; Bacteria - 1274; Metazoa - 6190; Fungi - 619; Plants - 1218; Viruses - 2; Other Eukaryotes - 3651 (source: NCBI BLink).  protein_id AT3G26100.1p  transcript_id AT3G26100.1  protein_id AT3G26100.1p  transcript_id AT3G26100.1  
At3g26110	chr3:009541573	0.0	W/9541573-9541959	AT3G26110.1  CDS  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: BCP1 (TAIR:AT1G24520.1); Has 20 Blast hits to 20 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G26110.1p  transcript_id AT3G26110.1  protein_id AT3G26110.1p  transcript_id AT3G26110.1  
At3g26115	chr3:009542301	0.0	W/9542301-9542375,9542525-9542833,9542921-9542963,9543043-9543372,9543486-9543615,9543724-9543894,9544003-9544246	AT3G26115.2  CDS  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_component cellular_component|GO:0005575||ND  product catalytic/ pyridoxal phosphate binding  note catalytic/ pyridoxal phosphate binding; FUNCTIONS IN: pyridoxal phosphate binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926); BEST Arabidopsis thaliana protein match is: D-CDES (D-CYSTEINE DESULFHYDRASE); 1-aminocyclopropane-1-carboxylate deaminase/ D-cysteine desulfhydrase/ catalytic (TAIR:AT1G48420.1); Has 1208 Blast hits to 1208 proteins in 458 species: Archae - 29; Bacteria - 836; Metazoa - 29; Fungi - 42; Plants - 43; Viruses - 0; Other Eukaryotes - 229 (source: NCBI BLink).  protein_id AT3G26115.2p  transcript_id AT3G26115.2  protein_id AT3G26115.2p  transcript_id AT3G26115.2  
At3g26115	chr3:009542301	0.0	W/9542301-9542375,9542525-9542833,9542921-9542963,9543043-9543372,9543486-9543615,9543724-9543894,9544021-9544246	AT3G26115.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_component cellular_component|GO:0005575||ND  product catalytic/ pyridoxal phosphate binding  note catalytic/ pyridoxal phosphate binding; FUNCTIONS IN: pyridoxal phosphate binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926); BEST Arabidopsis thaliana protein match is: D-CDES (D-CYSTEINE DESULFHYDRASE); 1-aminocyclopropane-1-carboxylate deaminase/ D-cysteine desulfhydrase/ catalytic (TAIR:AT1G48420.1); Has 1245 Blast hits to 1245 proteins in 471 species: Archae - 29; Bacteria - 861; Metazoa - 29; Fungi - 45; Plants - 43; Viruses - 0; Other Eukaryotes - 238 (source: NCBI BLink).  protein_id AT3G26115.1p  transcript_id AT3G26115.1  protein_id AT3G26115.1p  transcript_id AT3G26115.1  
At3g26120	chr3:009546398	0.0	W/9546398-9547106,9547351-9547900,9548286-9548423,9548545-9548686,9548878-9549186	AT3G26120.1  CDS  gene_syn TEL1, TERMINAL EAR1-LIKE 1  gene TEL1  function Similar to terminal ear1 in Zea mays. A member of mei2-like gene family; phylogenetic analysis revealed that TEL1 belongs to the third clade of mei2-like proteins (TEL clade), with conserved two N-terminal RNA recognition motifs (RRM), in addition to the C-terminal RRM, shared among all mei2-like proteins.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||ISS  product TEL1 (TERMINAL EAR1-LIKE 1); RNA binding / nucleic acid binding / nucleotide binding  note TERMINAL EAR1-LIKE 1 (TEL1); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: primary root apical meristem, cotyledon primordium, shoot apical meristem, floral meristem, embryonic shoot apical meristem; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), RNA recognition motif 2 (InterPro:IPR007201), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: TEL2 (TERMINAL EAR1-LIKE 2); RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT1G67770.1); Has 9288 Blast hits to 5976 proteins in 410 species: Archae - 8; Bacteria - 451; Metazoa - 3829; Fungi - 921; Plants - 2386; Viruses - 445; Other Eukaryotes - 1248 (source: NCBI BLink).  protein_id AT3G26120.1p  transcript_id AT3G26120.1  protein_id AT3G26120.1p  transcript_id AT3G26120.1  
At3g26125	chr3:009551812	0.0	W/9551812-9553437	AT3G26125.1  CDS  gene_syn CYP86C2  gene CYP86C2  function encodes a protein with cytochrome P450 domain  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP86C2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP86C2; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP86C3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G13140.1); Has 20441 Blast hits to 20389 proteins in 1070 species: Archae - 19; Bacteria - 1411; Metazoa - 9583; Fungi - 3942; Plants - 4699; Viruses - 3; Other Eukaryotes - 784 (source: NCBI BLink).  protein_id AT3G26125.1p  transcript_id AT3G26125.1  protein_id AT3G26125.1p  transcript_id AT3G26125.1  
At3g26130	chr3:009555216	0.0	C/9555216-9555611,9554281-9555046,9553708-9554201	AT3G26130.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 5 protein / cellulase family protein  note glycosyl hydrolase family 5 protein / cellulase family protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, male gametophyte, flower, root; EXPRESSED DURING: M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Ricin B-related lectin (InterPro:IPR008997), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 5 protein / cellulase family protein (TAIR:AT1G13130.1); Has 280 Blast hits to 272 proteins in 90 species: Archae - 0; Bacteria - 125; Metazoa - 0; Fungi - 73; Plants - 66; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT3G26130.1p  transcript_id AT3G26130.1  protein_id AT3G26130.1p  transcript_id AT3G26130.1  
At3g26134	chr3:009557436	0.0	C/9557436-9557799	AT3G26134.1  pseudogenic_transcript  pseudo  function unknown pseudogene  
At3g26140	chr3:009562735	0.0	C/9562735-9563070,9561883-9562130,9560486-9561003,9559742-9560166	AT3G26140.1  CDS  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 5 protein / cellulase family protein  note glycosyl hydrolase family 5 protein / cellulase family protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ricin B-related lectin (InterPro:IPR008997), Ricin B lectin (InterPro:IPR000772), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 5 protein / cellulase family protein (TAIR:AT1G13130.1); Has 226 Blast hits to 219 proteins in 77 species: Archae - 2; Bacteria - 79; Metazoa - 0; Fungi - 66; Plants - 65; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT3G26140.1p  transcript_id AT3G26140.1  protein_id AT3G26140.1p  transcript_id AT3G26140.1  
At3g26147	chr3:009565083	0.0	C/9565083-9565250	AT3G26147.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G26147.1p  transcript_id AT3G26147.1  protein_id AT3G26147.1p  transcript_id AT3G26147.1  
At3g26150	chr3:009566316	0.0	C/9566316-9567212,9565627-9566238	AT3G26150.1  CDS  gene_syn CYP71B16  gene CYP71B16  function putative cytochrome P450  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process biological_process|GO:0008150||ND  go_function oxygen binding|GO:0019825||ISS  product CYP71B16; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71B16; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP71B17; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G26160.1); Has 22956 Blast hits to 22810 proteins in 1215 species: Archae - 19; Bacteria - 1731; Metazoa - 10302; Fungi - 4336; Plants - 5742; Viruses - 3; Other Eukaryotes - 823 (source: NCBI BLink).  protein_id AT3G26150.1p  transcript_id AT3G26150.1  protein_id AT3G26150.1p  transcript_id AT3G26150.1  
At3g26160	chr3:009568975	0.0	C/9568975-9569871,9568280-9568891	AT3G26160.1  CDS  gene_syn CYP71B17  gene CYP71B17  function putative cytochrome P450  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71B17; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71B17; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP71B16; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G26150.1); Has 23431 Blast hits to 23280 proteins in 1239 species: Archae - 19; Bacteria - 1869; Metazoa - 10425; Fungi - 4468; Plants - 5800; Viruses - 3; Other Eukaryotes - 847 (source: NCBI BLink).  protein_id AT3G26160.1p  transcript_id AT3G26160.1  protein_id AT3G26160.1p  transcript_id AT3G26160.1  
At3g26165	chr3:009570418	0.0	C/9570418-9571979	AT3G26165.1  pseudogenic_transcript  pseudo  gene_syn CYP71B18, MTC11.8  gene CYP71B18  function putative cytochrome P450.  note pseudogene, cytochrome P450, potential frameshift mutation; blastp match of 49% identity and 5.6e-119 P-value to GP|16507125|gb|AAL24049.1|AF426451_1|AF426451 cytochrome P450 {Citrus sinensis}  
At3g26170	chr3:009574233	0.0	C/9574233-9575129,9573542-9574153	AT3G26170.1  CDS  gene_syn CYP71B19  gene CYP71B19  function putative cytochrome P450  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71B19; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71B19; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973); BEST Arabidopsis thaliana protein match is: CYP71B20; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G26180.1); Has 23231 Blast hits to 23057 proteins in 1235 species: Archae - 21; Bacteria - 1914; Metazoa - 10453; Fungi - 4246; Plants - 5729; Viruses - 3; Other Eukaryotes - 865 (source: NCBI BLink).  protein_id AT3G26170.1p  transcript_id AT3G26170.1  protein_id AT3G26170.1p  transcript_id AT3G26170.1  
At3g26180	chr3:009579097	0.0	C/9579097-9579993,9578407-9579018	AT3G26180.1  CDS  gene_syn CYP71B20  gene CYP71B20  function putative cytochrome P450  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71B20; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71B20; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973); BEST Arabidopsis thaliana protein match is: CYP71B19; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G26170.1); Has 23348 Blast hits to 23198 proteins in 1236 species: Archae - 21; Bacteria - 1877; Metazoa - 10444; Fungi - 4337; Plants - 5770; Viruses - 3; Other Eukaryotes - 896 (source: NCBI BLink).  protein_id AT3G26180.1p  transcript_id AT3G26180.1  protein_id AT3G26180.1p  transcript_id AT3G26180.1  
At3g26180	chr3:009579658	0.0	C/9579658-9579993,9579097-9579255,9578407-9579018	AT3G26180.2  CDS  gene_syn CYP71B20  gene CYP71B20  function putative cytochrome P450  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71B20; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71B20; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group IV (InterPro:IPR002403), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP71B19; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G26170.1); Has 27236 Blast hits to 23070 proteins in 1235 species: Archae - 21; Bacteria - 1880; Metazoa - 11933; Fungi - 4394; Plants - 8046; Viruses - 3; Other Eukaryotes - 959 (source: NCBI BLink).  protein_id AT3G26180.2p  transcript_id AT3G26180.2  protein_id AT3G26180.2p  transcript_id AT3G26180.2  
At3g26190	chr3:009584196	0.0	C/9584196-9585083,9583475-9584086	AT3G26190.1  CDS  gene_syn CYP71B21  gene CYP71B21  function putative cytochrome P450  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71B21; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71B21; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP71B22; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G26200.1); Has 23320 Blast hits to 23099 proteins in 1228 species: Archae - 21; Bacteria - 1774; Metazoa - 10450; Fungi - 4376; Plants - 5857; Viruses - 3; Other Eukaryotes - 839 (source: NCBI BLink).  protein_id AT3G26190.1p  transcript_id AT3G26190.1  protein_id AT3G26190.1p  transcript_id AT3G26190.1  
At3g26200	chr3:009589347	0.0	W/9589347-9590234,9590358-9590972	AT3G26200.1  CDS  gene_syn CYP71B22  gene CYP71B22  function putative cytochrome P450  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71B22; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71B22; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP71B21; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G26190.1); Has 23592 Blast hits to 23339 proteins in 1239 species: Archae - 23; Bacteria - 1760; Metazoa - 10617; Fungi - 4457; Plants - 5829; Viruses - 3; Other Eukaryotes - 903 (source: NCBI BLink).  protein_id AT3G26200.1p  transcript_id AT3G26200.1  protein_id AT3G26200.1p  transcript_id AT3G26200.1  
At3g26210	chr3:009594309	0.0	C/9594309-9595202,9593329-9593940	AT3G26210.1  CDS  gene_syn CYP71B23  gene CYP71B23  function putative cytochrome P450  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71B23; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71B23; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP71B7; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G13110.1); Has 23647 Blast hits to 23459 proteins in 1256 species: Archae - 21; Bacteria - 1906; Metazoa - 10562; Fungi - 4448; Plants - 5836; Viruses - 3; Other Eukaryotes - 871 (source: NCBI BLink).  protein_id AT3G26210.1p  transcript_id AT3G26210.1  protein_id AT3G26210.1p  transcript_id AT3G26210.1  
At3g26220	chr3:009596932	0.0	C/9596932-9597828,9596208-9596816	AT3G26220.1  CDS  gene_syn CYP71B3, CYTOCHROME P450 MONOOXYGENASE  gene CYP71B3  function cytochrome P450 monooxygenase  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71B3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71B3; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP71B24; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G26230.1); Has 23567 Blast hits to 23431 proteins in 1229 species: Archae - 23; Bacteria - 1888; Metazoa - 10384; Fungi - 4485; Plants - 5862; Viruses - 3; Other Eukaryotes - 922 (source: NCBI BLink).  protein_id AT3G26220.1p  transcript_id AT3G26220.1  protein_id AT3G26220.1p  transcript_id AT3G26220.1  
At3g26230	chr3:009599005	0.0	C/9599005-9599892,9598200-9598808	AT3G26230.1  CDS  gene_syn CYP71B24  gene CYP71B24  function putative cytochrome P450  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71B24; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71B24; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP71B3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G26220.1); Has 23842 Blast hits to 23700 proteins in 1250 species: Archae - 23; Bacteria - 2049; Metazoa - 10495; Fungi - 4491; Plants - 5867; Viruses - 6; Other Eukaryotes - 911 (source: NCBI BLink).  protein_id AT3G26230.1p  transcript_id AT3G26230.1  protein_id AT3G26230.1p  transcript_id AT3G26230.1  
At3g26235	chr3:009602005	0.0	W/9602005-9602062,9602145-9602399,9602499-9602773	AT3G26235.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G26235.1p  transcript_id AT3G26235.1  protein_id AT3G26235.1p  transcript_id AT3G26235.1  
At3g26240	chr3:009604335	0.0	C/9604335-9607103	AT3G26240.1  CDS  go_process intracellular signaling cascade|GO:0007242||IEA  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; INVOLVED IN: intracellular signaling cascade; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT3G26250.1); Has 1177 Blast hits to 494 proteins in 22 species: Archae - 0; Bacteria - 6; Metazoa - 8; Fungi - 2; Plants - 1157; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G26240.1p  transcript_id AT3G26240.1  protein_id AT3G26240.1p  transcript_id AT3G26240.1  
At3g26250	chr3:009611696	0.0	C/9611696-9613168	AT3G26250.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT3G26240.1); Has 1192 Blast hits to 496 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1175; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT3G26250.1p  transcript_id AT3G26250.1  protein_id AT3G26250.1p  transcript_id AT3G26250.1  
At3g26260	chr3:009613765	0.0	W/9613765-9618497	AT3G26260.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G29240.1); similar to cysteine-type peptidase [Arabidopsis thaliana] (TAIR:AT2G14010.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G44890.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At3g26265	chr3:009620523	0.0	C/9620523-9624054	AT3G26265.1  mRNA_TE_gene  pseudo  gene_syn MTC11.1  note Transposable element gene, Mutator-like transposase family, has a 2.1e-76 P-value blast match to Q9SLM0 /314-478 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g26270	chr3:009628296	0.0	C/9628296-9629195,9627602-9628207	AT3G26270.1  CDS  gene_syn CYP71B25  gene CYP71B25  function putative cytochrome P450  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71B25; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71B25; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP71B4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G26280.1); Has 23825 Blast hits to 23645 proteins in 1245 species: Archae - 23; Bacteria - 1915; Metazoa - 10513; Fungi - 4543; Plants - 5902; Viruses - 3; Other Eukaryotes - 926 (source: NCBI BLink).  protein_id AT3G26270.1p  transcript_id AT3G26270.1  protein_id AT3G26270.1p  transcript_id AT3G26270.1  
At3g26280	chr3:009631071	0.0	C/9631071-9631970,9630358-9630972	AT3G26280.1  CDS  gene_syn CYP71B4, CYTOCHROME P450 MONOOXYGENASE  gene CYP71B4  function cytochrome P450 monooxygenase  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71B4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71B4; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP71B25; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G26270.1); Has 23510 Blast hits to 23304 proteins in 1234 species: Archae - 21; Bacteria - 1802; Metazoa - 10576; Fungi - 4357; Plants - 5905; Viruses - 3; Other Eukaryotes - 846 (source: NCBI BLink).  protein_id AT3G26280.1p  transcript_id AT3G26280.1  protein_id AT3G26280.1p  transcript_id AT3G26280.1  
At3g26290	chr3:009634133	0.0	C/9634133-9634439,9633481-9634061,9632770-9633384	AT3G26290.1  CDS  gene_syn CYP71B26  gene CYP71B26  function putative cytochrome P450  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71B26; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71B26; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP71B34; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G26300.1); Has 23521 Blast hits to 23345 proteins in 1255 species: Archae - 23; Bacteria - 2051; Metazoa - 10355; Fungi - 4427; Plants - 5722; Viruses - 3; Other Eukaryotes - 940 (source: NCBI BLink).  protein_id AT3G26290.1p  transcript_id AT3G26290.1  protein_id AT3G26290.1p  transcript_id AT3G26290.1  
At3g26295	chr3:009636701	0.0	C/9636701-9638348	AT3G26295.1  pseudogenic_transcript  pseudo  gene_syn CYP71B33, F20C19.6  gene CYP71B33  function putative cytochrome P450.  note pseudogene, cytochrome P450, blastp match of 54% identity and 2.6e-115 P-value to GP|16507125|gb|AAL24049.1|AF426451_1|AF426451 cytochrome P450 {Citrus sinensis}  
At3g26300	chr3:009640560	0.0	C/9640560-9640866,9639886-9640466,9639199-9639813	AT3G26300.1  CDS  gene_syn CYP71B34  gene CYP71B34  function putative cytochrome P450  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71B34; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71B34; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP71B35; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G26310.1); Has 23491 Blast hits to 23326 proteins in 1266 species: Archae - 23; Bacteria - 2046; Metazoa - 10401; Fungi - 4386; Plants - 5727; Viruses - 3; Other Eukaryotes - 905 (source: NCBI BLink).  protein_id AT3G26300.1p  transcript_id AT3G26300.1  protein_id AT3G26300.1p  transcript_id AT3G26300.1  
At3g26310	chr3:009642476	0.0	C/9642476-9642779,9641788-9642368,9641089-9641706	AT3G26310.1  CDS  gene_syn CYP71B35  gene CYP71B35  function putative cytochrome P450  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71B35; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71B35; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973); BEST Arabidopsis thaliana protein match is: CYP71B34; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G26300.1); Has 23276 Blast hits to 23138 proteins in 1250 species: Archae - 23; Bacteria - 1920; Metazoa - 10369; Fungi - 4390; Plants - 5729; Viruses - 3; Other Eukaryotes - 842 (source: NCBI BLink).  protein_id AT3G26310.1p  transcript_id AT3G26310.1  protein_id AT3G26310.1p  transcript_id AT3G26310.1  
At3g26320	chr3:009645758	0.0	C/9645758-9646064,9645086-9645666,9644383-9644997	AT3G26320.1  CDS  gene_syn CYP71B36  gene CYP71B36  function putative cytochrome P450  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function oxygen binding|GO:0019825||ISS  product CYP71B36; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71B36; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, 4 leaf senescence stage, LP.02 two leaves visible; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP71B37; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G26330.1); Has 22725 Blast hits to 22537 proteins in 1223 species: Archae - 19; Bacteria - 1713; Metazoa - 10387; Fungi - 4189; Plants - 5690; Viruses - 3; Other Eukaryotes - 724 (source: NCBI BLink).  protein_id AT3G26320.1p  transcript_id AT3G26320.1  protein_id AT3G26320.1p  transcript_id AT3G26320.1  
At3g26330	chr3:009648230	0.0	C/9648230-9648536,9647559-9648139,9646873-9647487	AT3G26330.1  CDS  gene_syn CYP71B37  gene CYP71B37  function putative cytochrome P450  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71B37; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71B37; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP71B36; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G26320.1); Has 22986 Blast hits to 22809 proteins in 1231 species: Archae - 23; Bacteria - 1797; Metazoa - 10392; Fungi - 4263; Plants - 5752; Viruses - 3; Other Eukaryotes - 756 (source: NCBI BLink).  protein_id AT3G26330.1p  transcript_id AT3G26330.1  protein_id AT3G26330.1p  transcript_id AT3G26330.1  
At3g26340	chr3:009652453	0.0	C/9652453-9652572,9652218-9652347,9651905-9652011,9651259-9651393,9651047-9651150,9650823-9650923,9650600-9650724	AT3G26340.1  CDS  go_component proteasome core complex|GO:0005839||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function endopeptidase activity|GO:0004175||IEA  go_function threonine-type endopeptidase activity|GO:0004298||IEA  go_component proteasome core complex|GO:0005839||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_function endopeptidase activity|GO:0004175||ISS  product 20S proteasome beta subunit E, putative  note 20S proteasome beta subunit E, putative; FUNCTIONS IN: endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Peptidase T1A, proteasome beta-subunit (InterPro:IPR000243), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: PBE1; endopeptidase/ peptidase/ threonine-type endopeptidase (TAIR:AT1G13060.1); Has 4428 Blast hits to 4424 proteins in 409 species: Archae - 476; Bacteria - 181; Metazoa - 1589; Fungi - 914; Plants - 555; Viruses - 0; Other Eukaryotes - 713 (source: NCBI BLink).  protein_id AT3G26340.1p  transcript_id AT3G26340.1  protein_id AT3G26340.1p  transcript_id AT3G26340.1  
At3g26350	chr3:009653660	0.0	C/9653660-9654730	AT3G26350.1  CDS  go_component chloroplast|GO:0009507||IEA  product unknown protein  note LOCATED IN: chloroplast; EXPRESSED IN: pedicel, root, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13050.1); Has 3161 Blast hits to 2320 proteins in 288 species: Archae - 6; Bacteria - 135; Metazoa - 1071; Fungi - 426; Plants - 961; Viruses - 219; Other Eukaryotes - 343 (source: NCBI BLink).  protein_id AT3G26350.1p  transcript_id AT3G26350.1  protein_id AT3G26350.1p  transcript_id AT3G26350.1  
At3g26360	chr3:009656078	0.0	C/9656078-9656373,9655963-9655972	AT3G26360.1  CDS  product unknown protein  note unknown protein; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 14 Blast hits to 14 proteins in 7 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G26360.1p  transcript_id AT3G26360.1  protein_id AT3G26360.1p  transcript_id AT3G26360.1  
At3g26370	chr3:009656886	0.0	W/9656886-9657194,9657370-9657420,9657513-9657603,9657774-9657850,9657975-9658063,9658157-9658276,9658452-9658568,9658665-9658808,9658897-9659020,9659109-9659300,9659382-9659741	AT3G26370.1  CDS  go_component Golgi apparatus|GO:0005794|16618929|IDA  product unknown protein  note unknown protein; LOCATED IN: Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65470.1); Has 430 Blast hits to 424 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 430; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G26370.1p  transcript_id AT3G26370.1  protein_id AT3G26370.1p  transcript_id AT3G26370.1  
At3g26380	chr3:009660140	0.0	W/9660140-9660219,9660315-9660468,9660553-9660810,9660891-9661065,9661155-9661216,9661298-9661461,9661538-9661635,9661716-9661774,9661876-9662010,9662115-9662353,9662442-9662601,9662699-9662774,9662862-9663145	AT3G26380.1  CDS  go_component cell wall|GO:0005618|15593128|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process lactose catabolic process|GO:0005990||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function alpha-galactosidase activity|GO:0004557||ISS  product glycosyl hydrolase family protein 27 / alpha-galactosidase family protein / melibiase family protein  note glycosyl hydrolase family protein 27 / alpha-galactosidase family protein / melibiase family protein; FUNCTIONS IN: alpha-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: N-terminal protein myristoylation, carbohydrate metabolic process, metabolic process, lactose catabolic process; LOCATED IN: cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Glycoside hydrolase, family 27 (InterPro:IPR002241), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: alpha-galactosidase, putative / melibiase, putative / alpha-D-galactoside galactohydrolase, putative (TAIR:AT3G56310.1); Has 738 Blast hits to 734 proteins in 180 species: Archae - 0; Bacteria - 177; Metazoa - 230; Fungi - 167; Plants - 103; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT3G26380.1p  transcript_id AT3G26380.1  protein_id AT3G26380.1p  transcript_id AT3G26380.1  
At3g26390	chr3:009663450	0.0	C/9663450-9663950	AT3G26390.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G39782.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G26390.1p  transcript_id AT3G26390.1  protein_id AT3G26390.1p  transcript_id AT3G26390.1  
At3g26400	chr3:009666616	0.0	W/9666616-9667763,9668469-9668894,9669057-9669081	AT3G26400.1  CDS  gene_syn EIF4B1  gene EIF4B1  function member of eIF4B - eukaryotic initiation factor 4B  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function translation initiation factor activity|GO:0003743||ISS  product EIF4B1; translation initiation factor  note EIF4B1; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Plant specific eukaryotic initiation factor 4B (InterPro:IPR010433); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor, putative (EIF4B5) (TAIR:AT1G13020.1); Has 18556 Blast hits to 10722 proteins in 773 species: Archae - 11; Bacteria - 4801; Metazoa - 6738; Fungi - 1254; Plants - 3009; Viruses - 198; Other Eukaryotes - 2545 (source: NCBI BLink).  protein_id AT3G26400.1p  transcript_id AT3G26400.1  protein_id AT3G26400.1p  transcript_id AT3G26400.1  
At3g26410	chr3:009670860	0.0	C/9670860-9671273,9670461-9670778,9670306-9670380,9670153-9670227,9669508-9670059	AT3G26410.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process methylation|GO:0032259||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function methyltransferase activity|GO:0008168||IEA  product methyltransferase/ nucleic acid binding  note methyltransferase/ nucleic acid binding; FUNCTIONS IN: methyltransferase activity, nucleic acid binding; INVOLVED IN: methylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Putative RNA methylase (InterPro:IPR000241), tRNA guanosine-2&apos;-O-methyltransferase, TRM11 (InterPro:IPR016691), N-6 adenine-specific DNA methylase, conserved site (InterPro:IPR002052); Has 434 Blast hits to 428 proteins in 205 species: Archae - 104; Bacteria - 4; Metazoa - 143; Fungi - 86; Plants - 19; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT3G26410.1p  transcript_id AT3G26410.1  protein_id AT3G26410.1p  transcript_id AT3G26410.1  
At3g26420	chr3:009671953	0.0	W/9671953-9672063,9672429-9673055	AT3G26420.1  CDS  gene_syn ATRZ-1A  gene ATRZ-1A  function Zinc finger-containing glycine-rich RNA-binding protein. Cold-inducible. Contributes to the enhancement of freezing tolerance.  go_component cellular_component|GO:0005575||ND  go_process response to cold|GO:0009409|15941401|IMP  go_process cold acclimation|GO:0009631|16608866|IGI  go_function nucleotide binding|GO:0000166|15941401|IDA  go_function RNA binding|GO:0003723||ISS  product ATRZ-1A; RNA binding / nucleotide binding  note ATRZ-1A; FUNCTIONS IN: RNA binding, nucleotide binding; INVOLVED IN: cold acclimation, response to cold; LOCATED IN: cellular_component unknown; EXPRESSED IN: whole plant, pollen tube; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding / double-stranded DNA binding / single-stranded DNA binding (TAIR:AT2G21660.2); Has 22464 Blast hits to 17668 proteins in 851 species: Archae - 16; Bacteria - 1351; Metazoa - 12720; Fungi - 2401; Plants - 3509; Viruses - 8; Other Eukaryotes - 2459 (source: NCBI BLink).  protein_id AT3G26420.1p  transcript_id AT3G26420.1  protein_id AT3G26420.1p  transcript_id AT3G26420.1  
At3g26430	chr3:009674419	0.0	W/9674419-9674653,9674729-9674938,9675011-9675180,9675270-9675540,9675633-9675889	AT3G26430.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: ATFXG1 (alpha-fucosidase 1); alpha-L-fucosidase/ carboxylesterase (TAIR:AT1G67830.1); Has 1641 Blast hits to 1611 proteins in 79 species: Archae - 0; Bacteria - 59; Metazoa - 1; Fungi - 6; Plants - 1573; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G26430.1p  transcript_id AT3G26430.1  protein_id AT3G26430.1p  transcript_id AT3G26430.1  
At3g26440	chr3:009677418	0.0	W/9677418-9677449,9677545-9677656,9677739-9677858,9677938-9678042,9678129-9678215,9678300-9678415,9678504-9678605,9678674-9678787,9678877-9678933,9679016-9679136,9679233-9679307,9679414-9679449,9679568-9679681	AT3G26440.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13000.2); Has 192 Blast hits to 191 proteins in 15 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 179; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G26440.1p  transcript_id AT3G26440.1  protein_id AT3G26440.1p  transcript_id AT3G26440.1  
At3g26440	chr3:009677418	0.0	W/9677418-9677449,9677545-9677656,9677739-9677858,9677938-9678042,9678129-9678215,9678300-9678415,9678504-9678605,9678674-9678787,9678877-9678933,9679016-9679136,9679233-9679307,9679414-9679449,9679568-9679681	AT3G26440.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13000.2); Has 192 Blast hits to 191 proteins in 15 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 179; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G26440.2p  transcript_id AT3G26440.2  protein_id AT3G26440.2p  transcript_id AT3G26440.2  
At3g26440	chr3:009677418	0.0	W/9677418-9677449,9677545-9677656,9677739-9677858,9677938-9678042,9678129-9678215,9678300-9678415,9678504-9678605,9678674-9678787,9678877-9678933,9679016-9679136,9679233-9679307,9679414-9679494	AT3G26440.3  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13000.2); Has 191 Blast hits to 190 proteins in 15 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 178; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G26440.3p  transcript_id AT3G26440.3  protein_id AT3G26440.3p  transcript_id AT3G26440.3  
At3g26445	chr3:009680714	0.0	C/9680714-9680746,9680120-9680443	AT3G26445.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process protein amino acid N-linked glycosylation|GO:0006487||IEA  go_function beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity|GO:0003830||IEA  product glycosyl transferase family 17 protein  note glycosyl transferase family 17 protein; FUNCTIONS IN: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity; INVOLVED IN: protein amino acid N-linked glycosylation; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 17 (InterPro:IPR006813); BEST Arabidopsis thaliana protein match is: glycosyl transferase family 17 protein (TAIR:AT1G12990.1); Has 78 Blast hits to 70 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G26445.1p  transcript_id AT3G26445.1  protein_id AT3G26445.1p  transcript_id AT3G26445.1  
At3g26450	chr3:009683110	0.0	C/9683110-9683299,9681593-9681861	AT3G26450.1  CDS  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product major latex protein-related / MLP-related  note major latex protein-related / MLP-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: major latex protein-related / MLP-related (TAIR:AT3G26460.1); Has 219 Blast hits to 199 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 219; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G26450.1p  transcript_id AT3G26450.1  protein_id AT3G26450.1p  transcript_id AT3G26450.1  
At3g26460	chr3:009684418	0.0	C/9684418-9684607,9684053-9684321	AT3G26460.1  CDS  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product major latex protein-related / MLP-related  note major latex protein-related / MLP-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: major latex protein-related / MLP-related (TAIR:AT3G26450.1); Has 230 Blast hits to 209 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 230; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G26460.1p  transcript_id AT3G26460.1  protein_id AT3G26460.1p  transcript_id AT3G26460.1  
At3g26470	chr3:009686144	0.0	W/9686144-9686551,9686643-9686900	AT3G26470.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Disease resistance, plant (InterPro:IPR014011); BEST Arabidopsis thaliana protein match is: ADR1-L1 (ADR1-like 1); ATP binding / protein binding (TAIR:AT4G33300.2); Has 27 Blast hits to 27 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G26470.1p  transcript_id AT3G26470.1  protein_id AT3G26470.1p  transcript_id AT3G26470.1  
At3g26480	chr3:009690708	0.0	C/9690708-9690827,9690442-9690618,9690205-9690351,9689786-9690131,9689542-9689660,9689384-9689461,9689097-9689261,9688972-9689016,9688699-9688868,9688535-9688613,9688369-9688445,9688159-9688288,9687942-9688071,9687693-9687859,9687273-9687617	AT3G26480.1  CDS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: stem, hypocotyl, leaf; EXPRESSED DURING: LP.04 four leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT2G18900.1); Has 4279 Blast hits to 3034 proteins in 256 species: Archae - 26; Bacteria - 1455; Metazoa - 984; Fungi - 962; Plants - 270; Viruses - 0; Other Eukaryotes - 582 (source: NCBI BLink).  protein_id AT3G26480.1p  transcript_id AT3G26480.1  protein_id AT3G26480.1p  transcript_id AT3G26480.1  
At3g26483	chr3:009692369	0.0	C/9692369-9697032	AT3G26483.1  mRNA_TE_gene  pseudo  gene_syn F20C19.22  note Transposable element gene, copia-like retrotransposon family, has a 3.4e-252 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)  
At3g26486	chr3:009697583	0.0	W/9697583-9697898	AT3G26486.1  mRNA_TE_gene  pseudo  gene_syn F20C19.1  note Transposable element gene, pseudogene, hypothetical protein  
At3g26490	chr3:009704142	0.0	W/9704142-9704200,9704298-9704367,9704456-9705694,9705763-9706161	AT3G26490.1  CDS  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to light stimulus|GO:0009416||IEA  go_function signal transducer activity|GO:0004871||IEA  go_function protein binding|GO:0005515||IEA  go_process response to light stimulus|GO:0009416||ISS  go_function signal transducer activity|GO:0004871||ISS  product phototropic-responsive NPH3 family protein  note phototropic-responsive NPH3 family protein; FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: phototropic-responsive NPH3 family protein (TAIR:AT1G67900.2); Has 428 Blast hits to 411 proteins in 15 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 427; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G26490.1p  transcript_id AT3G26490.1  protein_id AT3G26490.1p  transcript_id AT3G26490.1  
At3g26500	chr3:009709357	0.0	C/9709357-9709944,9708940-9709106,9708195-9708855	AT3G26500.1  CDS  gene_syn MFE16.10  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT1G12970.1); Has 62208 Blast hits to 25174 proteins in 932 species: Archae - 28; Bacteria - 5614; Metazoa - 30035; Fungi - 1852; Plants - 20838; Viruses - 25; Other Eukaryotes - 3816 (source: NCBI BLink).  protein_id AT3G26500.1p  transcript_id AT3G26500.1  protein_id AT3G26500.1p  transcript_id AT3G26500.1  
At3g26510	chr3:009711886	0.0	C/9711886-9712542	AT3G26510.5  CDS  go_process biological_process|GO:0008150||ND  product octicosapeptide/Phox/Bem1p (PB1) domain-containing protein  note octicosapeptide/Phox/Bem1p (PB1) domain-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (TAIR:AT1G70640.1); Has 242 Blast hits to 240 proteins in 37 species: Archae - 0; Bacteria - 6; Metazoa - 18; Fungi - 14; Plants - 177; Viruses - 2; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT3G26510.5p  transcript_id AT3G26510.5  protein_id AT3G26510.5p  transcript_id AT3G26510.5  
At3g26510	chr3:009712444	0.0	C/9712444-9712588,9711886-9712331	AT3G26510.1  CDS  go_process biological_process|GO:0008150||ND  product octicosapeptide/Phox/Bem1p (PB1) domain-containing protein  note octicosapeptide/Phox/Bem1p (PB1) domain-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (TAIR:AT1G70640.1); Has 290 Blast hits to 276 proteins in 43 species: Archae - 0; Bacteria - 6; Metazoa - 20; Fungi - 22; Plants - 216; Viruses - 2; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT3G26510.1p  transcript_id AT3G26510.1  protein_id AT3G26510.1p  transcript_id AT3G26510.1  
At3g26510	chr3:009712444	0.0	C/9712444-9712588,9711886-9712331	AT3G26510.2  CDS  go_process biological_process|GO:0008150||ND  product octicosapeptide/Phox/Bem1p (PB1) domain-containing protein  note octicosapeptide/Phox/Bem1p (PB1) domain-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (TAIR:AT1G70640.1); Has 290 Blast hits to 276 proteins in 43 species: Archae - 0; Bacteria - 6; Metazoa - 20; Fungi - 22; Plants - 216; Viruses - 2; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT3G26510.2p  transcript_id AT3G26510.2  protein_id AT3G26510.2p  transcript_id AT3G26510.2  
At3g26510	chr3:009712444	0.0	C/9712444-9712588,9711886-9712331	AT3G26510.3  CDS  go_process biological_process|GO:0008150||ND  product octicosapeptide/Phox/Bem1p (PB1) domain-containing protein  note octicosapeptide/Phox/Bem1p (PB1) domain-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (TAIR:AT1G70640.1); Has 290 Blast hits to 276 proteins in 43 species: Archae - 0; Bacteria - 6; Metazoa - 20; Fungi - 22; Plants - 216; Viruses - 2; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT3G26510.3p  transcript_id AT3G26510.3  protein_id AT3G26510.3p  transcript_id AT3G26510.3  
At3g26510	chr3:009712444	0.0	C/9712444-9712588,9711886-9712331	AT3G26510.4  CDS  go_process biological_process|GO:0008150||ND  product octicosapeptide/Phox/Bem1p (PB1) domain-containing protein  note octicosapeptide/Phox/Bem1p (PB1) domain-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (TAIR:AT1G70640.1); Has 290 Blast hits to 276 proteins in 43 species: Archae - 0; Bacteria - 6; Metazoa - 20; Fungi - 22; Plants - 216; Viruses - 2; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT3G26510.4p  transcript_id AT3G26510.4  protein_id AT3G26510.4p  transcript_id AT3G26510.4  
At3g26511	chr3:009713088	0.0	C/9713088-9713186	AT3G26511.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G26511.1p  transcript_id AT3G26511.1  protein_id AT3G26511.1p  transcript_id AT3G26511.1  
At3g26520	chr3:009723317	0.0	C/9723317-9723703,9722770-9723144	AT3G26520.1  CDS  gene_syn GAMMA-TIP2, SALT-STRESS INDUCIBLE PROTEIN, SALT-STRESS INDUCIBLE TONOPLAST INTRINSIC PROTEIN, SITIP, TIP1;2, TIP2, TONOPLAST INTRINSIC PROTEIN 2  gene TIP2  function gamma tonoplast intrinsic protein 2 (TIP2). expressed throughout the plant and transcript level is increased upon NaCl or ABA treatments. NaCl stress-sensitive yeast mutant strains exhibit more resistance to salt when expressing this protein.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_process response to salt stress|GO:0009651|16183846|IEP  go_process water homeostasis|GO:0030104|10102577|IDA  go_function water channel activity|GO:0015250|11500536|ISS  go_function water channel activity|GO:0015250||ISS  product TIP2 (TONOPLAST INTRINSIC PROTEIN 2); water channel  note TONOPLAST INTRINSIC PROTEIN 2 (TIP2); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, response to salt stress, defense response to bacterium, water homeostasis; LOCATED IN: chloroplast, plasma membrane, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN); water channel (TAIR:AT2G36830.1); Has 6892 Blast hits to 6883 proteins in 1266 species: Archae - 57; Bacteria - 2663; Metazoa - 1285; Fungi - 271; Plants - 1454; Viruses - 0; Other Eukaryotes - 1162 (source: NCBI BLink).  protein_id AT3G26520.1p  transcript_id AT3G26520.1  protein_id AT3G26520.1p  transcript_id AT3G26520.1  
At3g26525	chr3:009725747	0.0	W/9725747-9729098	AT3G26525.1  mRNA_TE_gene  pseudo  gene_syn MFE16.4  note Transposable element gene, Mutator-like transposase family, has a 3.3e-87 P-value blast match to Q9SLM0 /314-478 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g26530	chr3:009731100	0.0	C/9731100-9735541	AT3G26530.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G08740.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G29240.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G44890.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At3g26539	chr3:009743729	0.0	C/9743729-9743842	AT3G26539.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G26539.1p  transcript_id AT3G26539.1  protein_id AT3G26539.1p  transcript_id AT3G26539.1  
At3g26540	chr3:009744542	0.0	C/9744542-9746644	AT3G26540.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G53360.1); Has 15875 Blast hits to 4616 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 85; Fungi - 48; Plants - 15521; Viruses - 0; Other Eukaryotes - 221 (source: NCBI BLink).  protein_id AT3G26540.1p  transcript_id AT3G26540.1  protein_id AT3G26540.1p  transcript_id AT3G26540.1  
At3g26550	chr3:009746995	0.0	C/9746995-9749040	AT3G26550.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT4G10370.1); Has 1426 Blast hits to 726 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 258; Fungi - 0; Plants - 1158; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT3G26550.1p  transcript_id AT3G26550.1  protein_id AT3G26550.1p  transcript_id AT3G26550.1  
At3g26560	chr3:009750607	0.0	C/9750607-9753719,9750122-9750515	AT3G26560.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_function RNA binding|GO:0003723||ISS  go_function ATP-dependent RNA helicase activity|GO:0004004||ISS  go_function ATP binding|GO:0005524||ISS  product ATP-dependent RNA helicase, putative  note ATP-dependent RNA helicase, putative; FUNCTIONS IN: in 6 functions; LOCATED IN: cytosol, mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated region (InterPro:IPR007502), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Region of unknown function DUF1605 (InterPro:IPR011709), S1, RNA binding (InterPro:IPR003029), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ESP3 (ENHANCED SILENCING PHENOTYPE 3); ATP binding / ATP-dependent RNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding (TAIR:AT1G32490.1); Has 44749 Blast hits to 27526 proteins in 1894 species: Archae - 128; Bacteria - 7760; Metazoa - 17585; Fungi - 4781; Plants - 2372; Viruses - 1049; Other Eukaryotes - 11074 (source: NCBI BLink).  protein_id AT3G26560.1p  transcript_id AT3G26560.1  protein_id AT3G26560.1p  transcript_id AT3G26560.1  
At3g26561	chr3:009753912	0.0	C/9753912-9754118	AT3G26561.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G26561.1p  transcript_id AT3G26561.1  protein_id AT3G26561.1p  transcript_id AT3G26561.1  
At3g26570	chr3:009756261	0.0	W/9756261-9756336,9756414-9757168,9757299-9757490,9757595-9758413	AT3G26570.1  CDS  gene_syn ORF02, PHOSPHATE TRANSPORTER 2;1, PHT2;1  gene PHT2;1  function low affinity phosphate transporter  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast envelope|GO:0009941|12172020|IDA  go_process phosphate transport|GO:0006817|12172020|IMP  go_function low affinity phosphate transmembrane transporter activity|GO:0009673|10559441|IDA  product PHT2;1 (PHOSPHATE TRANSPORTER 2;1); low affinity phosphate transmembrane transporter  note PHOSPHATE TRANSPORTER 2;1 (PHT2;1); FUNCTIONS IN: low affinity phosphate transmembrane transporter activity; INVOLVED IN: phosphate transport; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphate transporter (InterPro:IPR001204); Has 8054 Blast hits to 3710 proteins in 1015 species: Archae - 301; Bacteria - 4494; Metazoa - 729; Fungi - 400; Plants - 129; Viruses - 6; Other Eukaryotes - 1995 (source: NCBI BLink).  protein_id AT3G26570.1p  transcript_id AT3G26570.1  protein_id AT3G26570.1p  transcript_id AT3G26570.1  
At3g26570	chr3:009756416	0.0	W/9756416-9757168,9757299-9757490,9757595-9758413	AT3G26570.2  CDS  gene_syn ORF02, PHOSPHATE TRANSPORTER 2;1, PHT2;1  gene PHT2;1  function low affinity phosphate transporter  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast envelope|GO:0009941|12172020|IDA  go_process phosphate transport|GO:0006817|12172020|IMP  go_function low affinity phosphate transmembrane transporter activity|GO:0009673|10559441|IDA  product PHT2;1 (PHOSPHATE TRANSPORTER 2;1); low affinity phosphate transmembrane transporter  note PHOSPHATE TRANSPORTER 2;1 (PHT2;1); FUNCTIONS IN: low affinity phosphate transmembrane transporter activity; INVOLVED IN: phosphate transport; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphate transporter (InterPro:IPR001204); Has 8055 Blast hits to 3710 proteins in 1015 species: Archae - 301; Bacteria - 4494; Metazoa - 729; Fungi - 400; Plants - 130; Viruses - 6; Other Eukaryotes - 1995 (source: NCBI BLink).  protein_id AT3G26570.2p  transcript_id AT3G26570.2  protein_id AT3G26570.2p  transcript_id AT3G26570.2  
At3g26580	chr3:009758933	0.0	W/9758933-9759418,9759611-9759763,9759856-9760061,9760142-9760349	AT3G26580.1  CDS  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide region (InterPro:IPR013026); Has 2147 Blast hits to 1154 proteins in 168 species: Archae - 2; Bacteria - 99; Metazoa - 1301; Fungi - 180; Plants - 105; Viruses - 57; Other Eukaryotes - 403 (source: NCBI BLink).  protein_id AT3G26580.1p  transcript_id AT3G26580.1  protein_id AT3G26580.1p  transcript_id AT3G26580.1  
At3g26590	chr3:009764960	0.0	C/9764960-9765259,9763953-9764494,9763762-9763848,9762933-9762989,9762608-9762846,9762279-9762397,9762096-9762182,9761927-9761998	AT3G26590.1  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: drug transporter activity, antiporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT5G38030.1); Has 6281 Blast hits to 6219 proteins in 1131 species: Archae - 134; Bacteria - 4157; Metazoa - 119; Fungi - 210; Plants - 710; Viruses - 0; Other Eukaryotes - 951 (source: NCBI BLink).  protein_id AT3G26590.1p  transcript_id AT3G26590.1  protein_id AT3G26590.1p  transcript_id AT3G26590.1  
At3g26600	chr3:009769889	0.0	W/9769889-9771736	AT3G26600.1  CDS  gene_syn ARMADILLO REPEAT ONLY 4, ARO4  gene ARO4  function Armadillo repeat protein. One of a family of four in Arabidopsis. Expressed in vegetative tissues, anthers and ovules.  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product ARO4 (ARMADILLO REPEAT ONLY 4); binding  note ARMADILLO REPEAT ONLY 4 (ARO4); FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARO2 (ARMADILLO REPEAT ONLY 2); binding (TAIR:AT5G66200.1); Has 550 Blast hits to 439 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 135; Plants - 242; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT3G26600.1p  transcript_id AT3G26600.1  protein_id AT3G26600.1p  transcript_id AT3G26600.1  
At3g26605	chr3:009773018	0.0	W/9773018-9773500	AT3G26605.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 2.4e-51 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At3g26610	chr3:009777025	0.0	W/9777025-9777276,9777635-9777928,9778131-9778166,9778253-9778460,9779197-9779278,9779394-9779502,9779836-9780267	AT3G26610.1  CDS  gene_syn MFE16.14  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product polygalacturonase, putative / pectinase, putative  note polygalacturonase, putative / pectinase, putative; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: polygalacturonase (TAIR:AT1G10640.1); Has 2532 Blast hits to 2518 proteins in 313 species: Archae - 2; Bacteria - 546; Metazoa - 8; Fungi - 995; Plants - 893; Viruses - 2; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT3G26610.1p  transcript_id AT3G26610.1  protein_id AT3G26610.1p  transcript_id AT3G26610.1  
At3g26612	chr3:009781983	0.0	W/9781983-9783412	AT3G26612.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G26612.1  
At3g26614	chr3:009784890	0.0	C/9784890-9787571	AT3G26614.1  mRNA_TE_gene  pseudo  gene_syn MFE16.16  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 3.0e-39 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)  
At3g26616	chr3:009788105	0.0	C/9788105-9788141,9787574-9787962	AT3G26616.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G26616.1p  transcript_id AT3G26616.1  protein_id AT3G26616.1p  transcript_id AT3G26616.1  
At3g26618	chr3:009788854	0.0	W/9788854-9790161	AT3G26618.1  CDS  gene_syn ERF1-3, eukaryotic release factor 1-3  gene ERF1-3  go_component cytoplasm|GO:0005737||IEA  go_process translational termination|GO:0006415|15474304|IGI  go_process translational termination|GO:0006415||ISS  go_function translation release factor activity|GO:0003747|15474304|IGI  go_function translation release factor activity|GO:0003747||ISS  product ERF1-3 (eukaryotic release factor 1-3); translation release factor  note eukaryotic release factor 1-3 (ERF1-3); FUNCTIONS IN: translation release factor activity; INVOLVED IN: translational termination; LOCATED IN: cytoplasm; EXPRESSED IN: male gametophyte, pollen tube, leaf; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: eRF1 domain 2 (InterPro:IPR005141), eRF1 domain 3 (InterPro:IPR005142), eRF1 domain 1 (InterPro:IPR005140), Peptide chain release factor eRF/aRF subunit 1 (InterPro:IPR004403); BEST Arabidopsis thaliana protein match is: ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2); translation release factor (TAIR:AT1G12920.1); Has 801 Blast hits to 799 proteins in 274 species: Archae - 191; Bacteria - 2; Metazoa - 164; Fungi - 97; Plants - 79; Viruses - 1; Other Eukaryotes - 267 (source: NCBI BLink).  protein_id AT3G26618.1p  transcript_id AT3G26618.1  protein_id AT3G26618.1p  transcript_id AT3G26618.1  
At3g26620	chr3:009790628	0.0	W/9790628-9790780,9790900-9791112	AT3G26620.1  CDS  gene_syn LBD23, LOB DOMAIN-CONTAINING PROTEIN 23  gene LBD23  go_process biological_process|GO:0008150||ND  product LBD23 (LOB DOMAIN-CONTAINING PROTEIN 23)  note LOB DOMAIN-CONTAINING PROTEIN 23 (LBD23); INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD24 (LOB DOMAIN-CONTAINING PROTEIN 24) (TAIR:AT3G26660.1); Has 567 Blast hits to 564 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 567; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G26620.1p  transcript_id AT3G26620.1  protein_id AT3G26620.1p  transcript_id AT3G26620.1  
At3g26630	chr3:009791572	0.0	C/9791572-9792939	AT3G26630.1  CDS  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G66520.1); Has 11770 Blast hits to 4443 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 21; Plants - 11596; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink).  protein_id AT3G26630.1p  transcript_id AT3G26630.1  protein_id AT3G26630.1p  transcript_id AT3G26630.1  
At3g26640	chr3:009793276	0.0	W/9793276-9794316	AT3G26640.1  CDS  gene_syn LIGHT-REGULATED WD 2, LWD2  gene LWD2  go_component cellular_component|GO:0005575||ND  go_process entrainment of circadian clock by photoperiod|GO:0043153|18676661|IEP  go_process photoperiodism, flowering|GO:0048573|18676661|IMP  go_function nucleotide binding|GO:0000166||ISS  product LWD2 (LIGHT-REGULATED WD 2); nucleotide binding  note LIGHT-REGULATED WD 2 (LWD2); FUNCTIONS IN: nucleotide binding; INVOLVED IN: photoperiodism, flowering, entrainment of circadian clock by photoperiod; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: ATAN11 (ANTHOCYANIN11); nucleotide binding (TAIR:AT1G12910.1); Has 4143 Blast hits to 3818 proteins in 277 species: Archae - 6; Bacteria - 183; Metazoa - 2008; Fungi - 914; Plants - 518; Viruses - 0; Other Eukaryotes - 514 (source: NCBI BLink).  protein_id AT3G26640.1p  transcript_id AT3G26640.1  protein_id AT3G26640.1p  transcript_id AT3G26640.1  
At3g26650	chr3:009795226	0.0	W/9795226-9795255,9795334-9795441,9795626-9795930,9796016-9796260,9796346-9796848	AT3G26650.1  CDS  gene_syn GAPA, GAPA-1, GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT, GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 1, GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE A SUBUNIT  gene GAPA  function Encodes one of the two subunits forming the photosynthetic glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and as such a constituent of the supramolecular complex with phosphoribulokinase (PRK) thought to be linked by a small peptide encoded by CP12-2. GapA-1 is coordinately expressed by light with PRK and CP12-2. The enzyme activity, tested in leaf protein extracts dropped significantly after external sucrose treatment for the photosynthetic GAPDH (NADPH-dependent) but not for the cytosolic GAPDH (NADH-dependent).  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_component chloroplast stroma|GO:0009570|15533878|ISS  go_component stromule|GO:0010319|16923014|IDA  go_process glycolysis|GO:0006096||ISS  go_process response to cold|GO:0009409|16923014|IEP  go_process response to light stimulus|GO:0009416|15533878|IEP  go_process response to sucrose stimulus|GO:0009744|15533878|IEP  go_process peptidyl-cysteine S-nitrosylation|GO:0018119|18297659|IDA  go_process reductive pentose-phosphate cycle|GO:0019253|15533878|NAS  go_function protein binding|GO:0005515|16258009|IPI  go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943|3055302|TAS  go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943||ISS  product GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase/ protein binding  note GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT (GAPA); FUNCTIONS IN: protein binding, glyceraldehyde-3-phosphate dehydrogenase activity; INVOLVED IN: in 6 processes; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase (InterPro:IPR000173), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2); NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase (TAIR:AT1G12900.1); Has 17363 Blast hits to 17357 proteins in 3916 species: Archae - 27; Bacteria - 6622; Metazoa - 1319; Fungi - 1881; Plants - 2525; Viruses - 0; Other Eukaryotes - 4989 (source: NCBI BLink).  protein_id AT3G26650.1p  transcript_id AT3G26650.1  protein_id AT3G26650.1p  transcript_id AT3G26650.1  
At3g26660	chr3:009797458	0.0	C/9797458-9797610,9797136-9797348	AT3G26660.1  CDS  gene_syn LBD24, LOB DOMAIN-CONTAINING PROTEIN 24  gene LBD24  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  product LBD24 (LOB DOMAIN-CONTAINING PROTEIN 24)  note LOB DOMAIN-CONTAINING PROTEIN 24 (LBD24); INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD23 (LOB DOMAIN-CONTAINING PROTEIN 23) (TAIR:AT3G26620.1); Has 567 Blast hits to 564 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 567; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G26660.1p  transcript_id AT3G26660.1  protein_id AT3G26660.1p  transcript_id AT3G26660.1  
At3g26670	chr3:009800470	0.0	C/9800470-9800562,9800307-9800385,9800162-9800223,9799979-9800064,9799813-9799886,9799637-9799739,9799425-9799553,9799250-9799349,9799026-9799145,9798712-9798875,9798532-9798631,9798236-9798451	AT3G26670.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF803 (InterPro:IPR008521); BEST Arabidopsis thaliana protein match is: permease-related (TAIR:AT3G23870.1); Has 715 Blast hits to 711 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 298; Fungi - 244; Plants - 119; Viruses - 2; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT3G26670.1p  transcript_id AT3G26670.1  protein_id AT3G26670.1p  transcript_id AT3G26670.1  
At3g26670	chr3:009800470	0.0	C/9800470-9800562,9800307-9800385,9800162-9800223,9799979-9800064,9799813-9799886,9799637-9799739,9799425-9799553,9799250-9799349,9799026-9799145,9798712-9798875,9798532-9798631,9798236-9798451	AT3G26670.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF803 (InterPro:IPR008521); BEST Arabidopsis thaliana protein match is: permease-related (TAIR:AT3G23870.1); Has 715 Blast hits to 711 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 298; Fungi - 244; Plants - 119; Viruses - 2; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT3G26670.2p  transcript_id AT3G26670.2  protein_id AT3G26670.2p  transcript_id AT3G26670.2  
At3g26670	chr3:009800470	0.0	C/9800470-9800562,9800307-9800385,9800162-9800223,9799979-9800064,9799813-9799886,9799637-9799739,9799425-9799553,9799250-9799349,9799026-9799145,9798712-9798875,9798532-9798631,9798236-9798451	AT3G26670.3  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF803 (InterPro:IPR008521); BEST Arabidopsis thaliana protein match is: permease-related (TAIR:AT3G23870.1); Has 715 Blast hits to 711 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 298; Fungi - 244; Plants - 119; Viruses - 2; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT3G26670.3p  transcript_id AT3G26670.3  protein_id AT3G26670.3p  transcript_id AT3G26670.3  
At3g26680	chr3:009801309	0.0	W/9801309-9801765,9801865-9802045,9802123-9802362,9802466-9802610,9802693-9802827,9802929-9802995,9803072-9803149,9803271-9803323,9803419-9803517	AT3G26680.1  CDS  gene_syn ATSNM1, SENSITIVE TO NITROGEN MUSTARD 1, SNM1  gene SNM1  function involved in a SNM-dependent recombinational repair process of oxidatively induced DNA damage.  go_component cellular_component|GO:0005575||ND  go_process DNA repair|GO:0006281|15448639|IMP  go_process response to stress|GO:0006950|15448639|IEP  go_function molecular_function|GO:0003674||ND  product SNM1 (SENSITIVE TO NITROGEN MUSTARD 1)  note SENSITIVE TO NITROGEN MUSTARD 1 (SNM1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA repair, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA repair metallo-beta-lactamase (InterPro:IPR011084); BEST Arabidopsis thaliana protein match is: sterile alpha motif (SAM) domain-containing protein (TAIR:AT2G45700.1); Has 874 Blast hits to 838 proteins in 238 species: Archae - 113; Bacteria - 108; Metazoa - 258; Fungi - 157; Plants - 86; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).  protein_id AT3G26680.1p  transcript_id AT3G26680.1  protein_id AT3G26680.1p  transcript_id AT3G26680.1  
At3g26680	chr3:009801309	0.0	W/9801309-9801765,9801865-9802045,9802123-9802362,9802466-9802610,9802693-9802827,9802929-9802995,9803072-9803149,9803271-9803323,9803419-9803517	AT3G26680.2  CDS  gene_syn ATSNM1, SENSITIVE TO NITROGEN MUSTARD 1, SNM1  gene SNM1  function involved in a SNM-dependent recombinational repair process of oxidatively induced DNA damage.  go_component cellular_component|GO:0005575||ND  go_process DNA repair|GO:0006281|15448639|IMP  go_process response to stress|GO:0006950|15448639|IEP  go_function molecular_function|GO:0003674||ND  product SNM1 (SENSITIVE TO NITROGEN MUSTARD 1)  note SENSITIVE TO NITROGEN MUSTARD 1 (SNM1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA repair, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA repair metallo-beta-lactamase (InterPro:IPR011084); BEST Arabidopsis thaliana protein match is: sterile alpha motif (SAM) domain-containing protein (TAIR:AT2G45700.1); Has 874 Blast hits to 838 proteins in 238 species: Archae - 113; Bacteria - 108; Metazoa - 258; Fungi - 157; Plants - 86; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).  protein_id AT3G26680.2p  transcript_id AT3G26680.2  protein_id AT3G26680.2p  transcript_id AT3G26680.2  
At3g26680	chr3:009801309	0.0	W/9801309-9801765,9801865-9802045,9802123-9802362,9802466-9802610,9802693-9802827,9802929-9802995,9803072-9803149,9803271-9803323,9803419-9803517	AT3G26680.3  CDS  gene_syn ATSNM1, SENSITIVE TO NITROGEN MUSTARD 1, SNM1  gene SNM1  function involved in a SNM-dependent recombinational repair process of oxidatively induced DNA damage.  go_component cellular_component|GO:0005575||ND  go_process DNA repair|GO:0006281|15448639|IMP  go_process response to stress|GO:0006950|15448639|IEP  go_function molecular_function|GO:0003674||ND  product SNM1 (SENSITIVE TO NITROGEN MUSTARD 1)  note SENSITIVE TO NITROGEN MUSTARD 1 (SNM1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA repair, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA repair metallo-beta-lactamase (InterPro:IPR011084); BEST Arabidopsis thaliana protein match is: sterile alpha motif (SAM) domain-containing protein (TAIR:AT2G45700.1); Has 874 Blast hits to 838 proteins in 238 species: Archae - 113; Bacteria - 108; Metazoa - 258; Fungi - 157; Plants - 86; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).  protein_id AT3G26680.3p  transcript_id AT3G26680.3  protein_id AT3G26680.3p  transcript_id AT3G26680.3  
At3g26690	chr3:009805328	0.0	C/9805328-9805398,9805088-9805208,9804917-9805000,9804687-9804842,9804418-9804594	AT3G26690.1  CDS  gene_syn ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13, ATNUDT13, ATNUDX13  gene ATNUDX13  function Encodes AtNUDT13, a mitochondrial Nudix hydrolase specific for long-chain diadenosine polyphosphates.  go_component mitochondrion|GO:0005739||IDA  go_function hydrolase activity|GO:0016787||IDA  go_function hydrolase activity|GO:0016787||ISS  go_function bis(5 -adenosyl)-pentaphosphatase activity|GO:0034432|18815383|IDA  product ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13); bis(5 -adenosyl)-pentaphosphatase/ hydrolase  note ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13 (ATNUDX13); FUNCTIONS IN: hydrolase activity, bis(5 -adenosyl)-pentaphosphatase activity; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), NUDIX hydrolase, core (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: atnudt12 (Arabidopsis thaliana Nudix hydrolase homolog 12); hydrolase (TAIR:AT1G12880.1); Has 788 Blast hits to 786 proteins in 214 species: Archae - 0; Bacteria - 273; Metazoa - 219; Fungi - 72; Plants - 132; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).  protein_id AT3G26690.1p  transcript_id AT3G26690.1  protein_id AT3G26690.1p  transcript_id AT3G26690.1  
At3g26690	chr3:009805328	0.0	C/9805328-9805398,9805088-9805208,9804917-9805000,9804687-9804842,9804418-9804594	AT3G26690.2  CDS  gene_syn ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13, ATNUDT13, ATNUDX13  gene ATNUDX13  function Encodes AtNUDT13, a mitochondrial Nudix hydrolase specific for long-chain diadenosine polyphosphates.  go_component mitochondrion|GO:0005739||IDA  go_function hydrolase activity|GO:0016787||IDA  go_function hydrolase activity|GO:0016787||ISS  go_function bis(5 -adenosyl)-pentaphosphatase activity|GO:0034432|18815383|IDA  product ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13); bis(5 -adenosyl)-pentaphosphatase/ hydrolase  note ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13 (ATNUDX13); FUNCTIONS IN: hydrolase activity, bis(5 -adenosyl)-pentaphosphatase activity; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), NUDIX hydrolase, core (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: atnudt12 (Arabidopsis thaliana Nudix hydrolase homolog 12); hydrolase (TAIR:AT1G12880.1); Has 788 Blast hits to 786 proteins in 214 species: Archae - 0; Bacteria - 273; Metazoa - 219; Fungi - 72; Plants - 132; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).  protein_id AT3G26690.2p  transcript_id AT3G26690.2  protein_id AT3G26690.2p  transcript_id AT3G26690.2  
At3g26700	chr3:009810669	0.0	W/9810669-9810819,9810937-9811145,9811234-9811360,9811461-9811535,9811616-9811799,9811886-9812018,9812093-9812356	AT3G26700.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT1G79620.1); Has 66404 Blast hits to 65809 proteins in 2763 species: Archae - 22; Bacteria - 4899; Metazoa - 30594; Fungi - 4502; Plants - 16013; Viruses - 188; Other Eukaryotes - 10186 (source: NCBI BLink).  protein_id AT3G26700.1p  transcript_id AT3G26700.1  protein_id AT3G26700.1p  transcript_id AT3G26700.1  
At3g26710	chr3:009813550	0.0	W/9813550-9813885,9813983-9814104,9814177-9814329,9814414-9814606	AT3G26710.1  CDS  gene_syn CCB1, COFACTOR ASSEMBLY OF COMPLEX C  gene CCB1  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|18593701|IDA  go_process cytochrome b6f complex assembly|GO:0010190|18593701|IMP  go_function molecular_function|GO:0003674||ND  product CCB1 (COFACTOR ASSEMBLY OF COMPLEX C)  note COFACTOR ASSEMBLY OF COMPLEX C (CCB1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cytochrome b6f complex assembly; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 168 Blast hits to 168 proteins in 43 species: Archae - 0; Bacteria - 60; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT3G26710.1p  transcript_id AT3G26710.1  protein_id AT3G26710.1p  transcript_id AT3G26710.1  
At3g26720	chr3:009816707	0.0	W/9816707-9816910,9817001-9817084,9817155-9817243,9817323-9817497,9817626-9817745,9817828-9817911,9817987-9818058,9818143-9818256,9818361-9818461,9818544-9818637,9818728-9818895,9818991-9819080,9819332-9819397,9819491-9819547,9819649-9819868,9820029-9820162,9820253-9820315,9820403-9820462,9820550-9820621,9820725-9820772,9820852-9820971,9821071-9821136,9821247-9821359,9821442-9821526,9821677-9821787,9821869-9821964,9822055-9822102,9822660-9822728,9822820-9823056	AT3G26720.1  CDS  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process mannose metabolic process|GO:0006013||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function alpha-mannosidase activity|GO:0004559||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function mannosidase activity|GO:0015923||IEA  go_function carbohydrate binding|GO:0030246||IEA  go_function alpha-mannosidase activity|GO:0004559||ISS  product glycosyl hydrolase family 38 protein  note glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central region (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 38 protein (TAIR:AT5G13980.2); Has 818 Blast hits to 789 proteins in 110 species: Archae - 3; Bacteria - 62; Metazoa - 577; Fungi - 5; Plants - 72; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).  protein_id AT3G26720.1p  transcript_id AT3G26720.1  protein_id AT3G26720.1p  transcript_id AT3G26720.1  
At3g26720	chr3:009816707	0.0	W/9816707-9816910,9817001-9817084,9817155-9817243,9817323-9817497,9817626-9817745,9817828-9817911,9817987-9818058,9818143-9818256,9818361-9818461,9818544-9818637,9818728-9818895,9818991-9819080,9819332-9819397,9819491-9819547,9819649-9819868,9820029-9820162,9820253-9820315,9820403-9820462,9820550-9820621,9820725-9820772,9820852-9820971,9821071-9821136,9821247-9821359,9821442-9821526,9821677-9821787,9821869-9821964,9822055-9822102,9822660-9822728,9822950-9822958	AT3G26720.2  CDS  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process mannose metabolic process|GO:0006013||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function alpha-mannosidase activity|GO:0004559||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function mannosidase activity|GO:0015923||IEA  go_function carbohydrate binding|GO:0030246||IEA  go_function alpha-mannosidase activity|GO:0004559||ISS  product glycosyl hydrolase family 38 protein  note glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: plasma membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central region (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 38 protein (TAIR:AT5G13980.2); Has 822 Blast hits to 794 proteins in 108 species: Archae - 3; Bacteria - 62; Metazoa - 582; Fungi - 5; Plants - 69; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT3G26720.2p  transcript_id AT3G26720.2  protein_id AT3G26720.2p  transcript_id AT3G26720.2  
At3g26730	chr3:009823770	0.0	W/9823770-9823983,9824150-9824199,9824286-9825596,9825816-9825904,9826206-9826308,9826403-9826507,9826673-9826796,9826880-9827056,9827125-9827270	AT3G26730.1  CDS  go_component chloroplast|GO:0009507||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); Has 5616 Blast hits to 1874 proteins in 214 species: Archae - 3; Bacteria - 108; Metazoa - 2179; Fungi - 373; Plants - 239; Viruses - 6; Other Eukaryotes - 2708 (source: NCBI BLink).  protein_id AT3G26730.1p  transcript_id AT3G26730.1  protein_id AT3G26730.1p  transcript_id AT3G26730.1  
At3g26740	chr3:009827868	0.0	W/9827868-9828064,9828148-9828300,9828386-9828461	AT3G26740.1  CDS  gene_syn CCL, CCR-LIKE  gene CCL  function transcripts are differentially regulated at the level of mRNA stability at different times of day controlled by the circadian clock. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product CCL (CCR-LIKE)  note CCR-LIKE (CCL); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Light regulated Lir1 (InterPro:IPR009856); Has 44 Blast hits to 44 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G26740.1p  transcript_id AT3G26740.1  protein_id AT3G26740.1p  transcript_id AT3G26740.1  
At3g26742	chr3:009831400	0.0	W/9831400-9831555	AT3G26742.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G26742.1p  transcript_id AT3G26742.1  protein_id AT3G26742.1p  transcript_id AT3G26742.1  
At3g26744	chr3:009833786	0.0	C/9833786-9834790,9833379-9833603,9833116-9833286,9832953-9833036	AT3G26744.1  CDS  gene_syn A. THALIANA INDUCER OF CBP EXPRESSION 1, ATICE1, ICE1, INDUCER OF CBF EXPRESSION 1, SCREAM, SCRM  gene ICE1  function Encodes a MYC-like bHLH transcriptional activator that binds specifically to the MYC recognition sequences in the CBF3 promoter. Mutants are defective in cold-regulated gene expression. Cold stress triggers protein degradation of nuclear GFPICE1 protein, and the RING finger protein HOS1 is required. Sumoylation of ICE1 controls CBF3/DREB1A expression and freezing tolerance.  go_component nucleus|GO:0005634|12672693|IDA  go_process response to cold|GO:0009409|12672693|IEP  go_process stomatal lineage progression|GO:0010440|18641265|IMP  go_process protein ubiquitination|GO:0016567|16702557|IDA  go_process positive regulation of transcription|GO:0045941|12672693|IDA  go_process response to freezing|GO:0050826|17416732|IMP  go_function DNA binding|GO:0003677|12672693|IDA  go_function DNA binding|GO:0003677|16214899|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription activator activity|GO:0016563|12672693|IDA  product ICE1 (INDUCER OF CBF EXPRESSION 1); DNA binding / transcription activator/ transcription factor  note INDUCER OF CBF EXPRESSION 1 (ICE1); FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: response to freezing, positive regulation of transcription, response to cold, stomatal lineage progression, protein ubiquitination; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: SCRM2 (SCREAM 2); DNA binding / transcription factor (TAIR:AT1G12860.1); Has 1469 Blast hits to 1468 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 14; Plants - 1434; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G26744.1p  transcript_id AT3G26744.1  protein_id AT3G26744.1p  transcript_id AT3G26744.1  
At3g26744	chr3:009833786	0.0	C/9833786-9834790,9833379-9833603,9833116-9833286,9832953-9833036	AT3G26744.2  CDS  gene_syn A. THALIANA INDUCER OF CBP EXPRESSION 1, ATICE1, ICE1, INDUCER OF CBF EXPRESSION 1, SCREAM, SCRM  gene ICE1  function Encodes a MYC-like bHLH transcriptional activator that binds specifically to the MYC recognition sequences in the CBF3 promoter. Mutants are defective in cold-regulated gene expression. Cold stress triggers protein degradation of nuclear GFPICE1 protein, and the RING finger protein HOS1 is required. Sumoylation of ICE1 controls CBF3/DREB1A expression and freezing tolerance.  go_component nucleus|GO:0005634|12672693|IDA  go_process response to cold|GO:0009409|12672693|IEP  go_process stomatal lineage progression|GO:0010440|18641265|IMP  go_process protein ubiquitination|GO:0016567|16702557|IDA  go_process positive regulation of transcription|GO:0045941|12672693|IDA  go_process response to freezing|GO:0050826|17416732|IMP  go_function DNA binding|GO:0003677|12672693|IDA  go_function DNA binding|GO:0003677|16214899|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription activator activity|GO:0016563|12672693|IDA  product ICE1 (INDUCER OF CBF EXPRESSION 1); DNA binding / transcription activator/ transcription factor  note INDUCER OF CBF EXPRESSION 1 (ICE1); FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: response to freezing, positive regulation of transcription, response to cold, stomatal lineage progression, protein ubiquitination; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: SCRM2 (SCREAM 2); DNA binding / transcription factor (TAIR:AT1G12860.1); Has 1469 Blast hits to 1468 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 14; Plants - 1434; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G26744.2p  transcript_id AT3G26744.2  protein_id AT3G26744.2p  transcript_id AT3G26744.2  
At3g26744	chr3:009833786	0.0	C/9833786-9834790,9833379-9833603,9833116-9833286,9832953-9833036	AT3G26744.4  CDS  gene_syn A. THALIANA INDUCER OF CBP EXPRESSION 1, ATICE1, ICE1, INDUCER OF CBF EXPRESSION 1, SCREAM, SCRM  gene ICE1  function Encodes a MYC-like bHLH transcriptional activator that binds specifically to the MYC recognition sequences in the CBF3 promoter. Mutants are defective in cold-regulated gene expression. Cold stress triggers protein degradation of nuclear GFPICE1 protein, and the RING finger protein HOS1 is required. Sumoylation of ICE1 controls CBF3/DREB1A expression and freezing tolerance.  go_component nucleus|GO:0005634|12672693|IDA  go_process response to cold|GO:0009409|12672693|IEP  go_process stomatal lineage progression|GO:0010440|18641265|IMP  go_process protein ubiquitination|GO:0016567|16702557|IDA  go_process positive regulation of transcription|GO:0045941|12672693|IDA  go_process response to freezing|GO:0050826|17416732|IMP  go_function DNA binding|GO:0003677|12672693|IDA  go_function DNA binding|GO:0003677|16214899|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription activator activity|GO:0016563|12672693|IDA  product ICE1 (INDUCER OF CBF EXPRESSION 1); DNA binding / transcription activator/ transcription factor  note INDUCER OF CBF EXPRESSION 1 (ICE1); FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: response to freezing, positive regulation of transcription, response to cold, stomatal lineage progression, protein ubiquitination; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: SCRM2 (SCREAM 2); DNA binding / transcription factor (TAIR:AT1G12860.1); Has 1469 Blast hits to 1468 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 14; Plants - 1434; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G26744.4p  transcript_id AT3G26744.4  protein_id AT3G26744.4p  transcript_id AT3G26744.4  
At3g26747	chr3:009839184	0.0	W/9839184-9839257	AT3G26747.1  tRNA  gene_syn 60467.TRNA-VAL-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Val (anticodon: CAC)  transcript_id AT3G26747.1  
At3g26750	chr3:009840139	0.0	C/9840139-9841719	AT3G26750.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 13 Blast hits to 12 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G26750.1p  transcript_id AT3G26750.1  protein_id AT3G26750.1p  transcript_id AT3G26750.1  
At3g26760	chr3:009843639	0.0	W/9843639-9843658,9843758-9843838,9843943-9844211,9844367-9844899	AT3G26760.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT3G26770.1); Has 84997 Blast hits to 84832 proteins in 2251 species: Archae - 476; Bacteria - 46342; Metazoa - 5367; Fungi - 4499; Plants - 1586; Viruses - 5; Other Eukaryotes - 26722 (source: NCBI BLink).  protein_id AT3G26760.1p  transcript_id AT3G26760.1  protein_id AT3G26760.1p  transcript_id AT3G26760.1  
At3g26770	chr3:009845494	0.0	W/9845494-9845528,9845611-9845688,9845985-9846415,9846703-9847079	AT3G26770.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT3G26760.1); Has 84124 Blast hits to 83955 proteins in 2264 species: Archae - 482; Bacteria - 45536; Metazoa - 5627; Fungi - 4443; Plants - 1587; Viruses - 7; Other Eukaryotes - 26442 (source: NCBI BLink).  protein_id AT3G26770.1p  transcript_id AT3G26770.1  protein_id AT3G26770.1p  transcript_id AT3G26770.1  
At3g26775	chr3:009847232	0.0	C/9847232-9848665	AT3G26775.1  pseudogenic_transcript  pseudo  note pseudogene, F-box protein, similar to F-box protein  
At3g26780	chr3:009848747	0.0	W/9848747-9849286,9849618-9850277	AT3G26780.1  CDS  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process metabolic process|GO:0008152||ISS  go_function catalytic activity|GO:0003824||ISS  product catalytic  note catalytic; FUNCTIONS IN: catalytic activity; INVOLVED IN: N-terminal protein myristoylation, metabolic process; LOCATED IN: cytosol, mitochondrion; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078), Uncharacterised conserved protein UCP036920, phosphoglycerate mutase, plant X4/Y4 (InterPro:IPR017070); BEST Arabidopsis thaliana protein match is: phosphoglycerate/bisphosphoglycerate mutase family protein (TAIR:AT1G12850.1); Has 1971 Blast hits to 1926 proteins in 580 species: Archae - 6; Bacteria - 1165; Metazoa - 207; Fungi - 30; Plants - 128; Viruses - 0; Other Eukaryotes - 435 (source: NCBI BLink).  protein_id AT3G26780.1p  transcript_id AT3G26780.1  protein_id AT3G26780.1p  transcript_id AT3G26780.1  
At3g26782	chr3:009850594	0.0	W/9850594-9851529,9851639-9852682	AT3G26782.1  CDS  go_component mitochondrion|GO:0005739|14671022|IDA  product unknown protein  note LOCATED IN: mitochondrion; EXPRESSED IN: seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G23330.1); Has 13812 Blast hits to 4961 proteins in 140 species: Archae - 0; Bacteria - 2; Metazoa - 58; Fungi - 30; Plants - 13522; Viruses - 0; Other Eukaryotes - 200 (source: NCBI BLink).  protein_id AT3G26782.1p  transcript_id AT3G26782.1  protein_id AT3G26782.1p  transcript_id AT3G26782.1  
At3g26790	chr3:009855506	0.0	C/9855506-9855748,9855225-9855314,9855042-9855142,9854672-9854718,9854493-9854569,9854025-9854408	AT3G26790.1  CDS  gene_syn FUS3, FUSCA 3  gene FUS3  function Transcriptional factor with high similarity to the B3 region of the VP1/ABI3-like proteins. Full length FUS3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)], present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of FUS3 requires the B3 DNA-binding domain and an activation domain. FUS3 specifies cotyledon identity. Regulator of gene expression during late embryogenesis. Involved in the control foliar organ identity in Arabidopsis by regulating the synthesis of two hormones, abscisic acid and gibberellin. FUS3 together with LEC1 positively regulate the abundance of the ABI3 protein in the seed.  go_component cellular_component|GO:0005575||ND  go_process response to heat|GO:0009408|10759505|IMP  go_process response to auxin stimulus|GO:0009733|15363412|IEP  go_process embryonic development ending in seed dormancy|GO:0009793|9286105|IGI  go_process embryonic development ending in seed dormancy|GO:0009793||IMP  go_process positive regulation of abscisic acid biosynthetic process|GO:0010116|15363412|IMP  go_process somatic embryogenesis|GO:0010262|16034595|IMP  go_process negative regulation of gibberellin biosynthetic process|GO:0010373|15363412|IMP  go_function DNA binding|GO:0003677|14767767|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|9807814|ISS  product FUS3 (FUSCA 3); DNA binding / transcription activator/ transcription factor  note FUSCA 3 (FUS3); FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: in 6 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: ABI3 (ABA INSENSITIVE 3); DNA binding / basal transcription repressor/ transcription activator/ transcription factor (TAIR:AT3G24650.1); Has 675 Blast hits to 662 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 4; Plants - 302; Viruses - 0; Other Eukaryotes - 368 (source: NCBI BLink).  protein_id AT3G26790.1p  transcript_id AT3G26790.1  protein_id AT3G26790.1p  transcript_id AT3G26790.1  
At3g26800	chr3:009862173	0.0	W/9862173-9862778	AT3G26800.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24945.1); Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G26800.1p  transcript_id AT3G26800.1  protein_id AT3G26800.1p  transcript_id AT3G26800.1  
At3g26805	chr3:009863074	0.0	C/9863074-9863900	AT3G26805.1  pseudogenic_transcript  pseudo  gene_syn MDJ14.11  note pseudogene, aspartic protease, blastp match of 37% identity and 5.3e-11 P-value to GP|4389326|pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L. >GP|6729875|pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L  
At3g26810	chr3:009868342	0.0	W/9868342-9868793,9869110-9869605,9869685-9870464	AT3G26810.1  CDS  gene_syn AFB2, AUXIN SIGNALING F-BOX 2  gene AFB2  go_component plasma membrane|GO:0005886|17151019|IDA  go_process response to molecule of bacterial origin|GO:0002237|16627744|IEP  go_process pollen maturation|GO:0010152|18628351|IGI  go_process stamen development|GO:0048443|18628351|IGI  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function auxin binding|GO:0010011|15917797|IGI  product AFB2 (AUXIN SIGNALING F-BOX 2); auxin binding / ubiquitin-protein ligase  note AUXIN SIGNALING F-BOX 2 (AFB2); FUNCTIONS IN: auxin binding, ubiquitin-protein ligase activity; INVOLVED IN: stamen development, pollen maturation, response to molecule of bacterial origin; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: AFB3 (AUXIN SIGNALING F-BOX 3); auxin binding / ubiquitin-protein ligase (TAIR:AT1G12820.1); Has 2003 Blast hits to 1306 proteins in 118 species: Archae - 0; Bacteria - 2; Metazoa - 844; Fungi - 94; Plants - 935; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).  protein_id AT3G26810.1p  transcript_id AT3G26810.1  protein_id AT3G26810.1p  transcript_id AT3G26810.1  
At3g26812	chr3:009871960	0.0	C/9871960-9872165	AT3G26812.1  miRNA  gene_syn MICRORNA169I, MIR169I  gene MIR169I  function Encodes a microRNA that targets several HAP2 family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UAGCCAAGGAUGACUUGCCUG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR169I (MICRORNA169I); miRNA  transcript_id AT3G26812.1  
At3g26813	chr3:009872333	0.0	C/9872333-9872553	AT3G26813.1  miRNA  gene_syn MICRORNA169J, MIR169J  gene MIR169J  function Encodes a microRNA that targets several HAP2 family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UAGCCAAGGAUGACUUGCCUG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR169J (MICRORNA169J); miRNA  transcript_id AT3G26813.1  
At3g26815	chr3:009875525	0.0	C/9875525-9875737	AT3G26815.1  miRNA  gene_syn MICRORNA169K, MIR169K  gene MIR169K  function Encodes a microRNA that targets several HAP2 family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UAGCCAAGGAUGACUUGCCUG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR169K (MICRORNA169K); miRNA  transcript_id AT3G26815.1  
At3g26816	chr3:009875893	0.0	C/9875893-9876103	AT3G26816.1  miRNA  gene_syn MICRORNA169L, MIR169L  gene MIR169L  function Encodes a microRNA that targets several HAP2 family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UAGCCAAGGAUGACUUGCCUG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR169L (MICRORNA169L); miRNA  transcript_id AT3G26816.1  
At3g26818	chr3:009878168	0.0	C/9878168-9878379	AT3G26818.1  miRNA  gene_syn MICRORNA169M, MIR169M  gene MIR169M  function Encodes a microRNA that targets several HAP2 family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UAGCCAAGGAUGACUUGCCUG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR169M (MICRORNA169M); miRNA  transcript_id AT3G26818.1  
At3g26819	chr3:009878540	0.0	C/9878540-9878754	AT3G26819.1  miRNA  gene_syn MICRORNA169N, MIR169N  gene MIR169N  function Encodes a microRNA that targets several HAP2 family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UAGCCAAGGAUGACUUGCCUG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR169N (MICRORNA169N); miRNA  transcript_id AT3G26819.1  
At3g26820	chr3:009881128	0.0	W/9881128-9881305,9881404-9881508,9881852-9881903,9882084-9882139,9882230-9882388,9882485-9882589,9882801-9882916,9883031-9883152,9883257-9883365,9883485-9883615,9883718-9883767,9883867-9884084,9884188-9884301,9884516-9884603,9884678-9884788,9884877-9885067	AT3G26820.1  CDS  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product esterase/lipase/thioesterase family protein  note esterase/lipase/thioesterase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Diacylglycerol acyltransferase (InterPro:IPR007130), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: esterase/lipase/thioesterase family protein (TAIR:AT3G26840.1); Has 256 Blast hits to 252 proteins in 76 species: Archae - 0; Bacteria - 130; Metazoa - 4; Fungi - 2; Plants - 86; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT3G26820.1p  transcript_id AT3G26820.1  protein_id AT3G26820.1p  transcript_id AT3G26820.1  
At3g26830	chr3:009887990	0.0	W/9887990-9888874,9888973-9889560	AT3G26830.1  CDS  gene_syn CYP71B15, PAD3, PHYTOALEXIN DEFICIENT 3  gene PAD3  function Mutations in pad3 are defective in biosynthesis of the indole derived phytoalexin camalexin. Encodes a cytochrome P450 enzyme that catalyzes the conversion of dihydrocamalexic acid to camalexin.  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component microsome|GO:0005792|16766671|IDA  go_process response to bacterium|GO:0009617|17573535|IEP  go_process indole phytoalexin biosynthetic process|GO:0009700|8090752|IMP  go_process response to abscisic acid stimulus|GO:0009737|16258012|IEP  go_process camalexin biosynthetic process|GO:0010120|16766671|IDA  go_process camalexin biosynthetic process|GO:0010120|16766671|IMP  go_process camalexin biosynthetic process|GO:0010120|9136026|IMP  go_function monooxygenase activity|GO:0004497|10590168|ISS  go_function dihydrocamalexic acid decarboxylase activity|GO:0010298|16766671|IDA  go_function oxygen binding|GO:0019825||ISS  product PAD3 (PHYTOALEXIN DEFICIENT 3); dihydrocamalexic acid decarboxylase/ monooxygenase/ oxygen binding  note PHYTOALEXIN DEFICIENT 3 (PAD3); FUNCTIONS IN: dihydrocamalexic acid decarboxylase activity, monooxygenase activity, oxygen binding; INVOLVED IN: indole phytoalexin biosynthetic process, response to abscisic acid stimulus, response to bacterium, camalexin biosynthetic process; LOCATED IN: endoplasmic reticulum, microsome; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP71B28; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G13090.1); Has 22676 Blast hits to 22555 proteins in 1207 species: Archae - 21; Bacteria - 1769; Metazoa - 10289; Fungi - 4058; Plants - 5735; Viruses - 0; Other Eukaryotes - 804 (source: NCBI BLink).  protein_id AT3G26830.1p  transcript_id AT3G26830.1  protein_id AT3G26830.1p  transcript_id AT3G26830.1  
At3g26840	chr3:009892808	0.0	W/9892808-9893189,9893300-9893351,9893476-9893531,9893619-9893777,9893850-9893960,9894081-9894196,9894300-9894421,9894498-9894606,9894717-9894847,9894932-9895298,9895388-9895501,9895586-9895671,9895759-9895868,9895964-9896154	AT3G26840.1  CDS  go_component plastoglobule|GO:0010287|16414959|IDA  go_process metabolic process|GO:0008152||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_component plastoglobule|GO:0010287|16461379|IDA  go_function catalytic activity|GO:0003824||ISS  product esterase/lipase/thioesterase family protein  note esterase/lipase/thioesterase family protein; FUNCTIONS IN: catalytic activity, acyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: plastoglobule; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: esterase/lipase/thioesterase family protein (TAIR:AT3G26820.1); Has 398 Blast hits to 392 proteins in 113 species: Archae - 0; Bacteria - 201; Metazoa - 76; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT3G26840.1p  transcript_id AT3G26840.1  protein_id AT3G26840.1p  transcript_id AT3G26840.1  
At3g26850	chr3:009896648	0.0	C/9896648-9897415,9896541-9896570	AT3G26850.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: zinc finger protein-related (TAIR:AT3G18640.1); Has 91 Blast hits to 91 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 22; Fungi - 0; Plants - 49; Viruses - 4; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT3G26850.1p  transcript_id AT3G26850.1  protein_id AT3G26850.1p  transcript_id AT3G26850.1  
At3g26850	chr3:009896648	0.0	C/9896648-9897415,9896541-9896570	AT3G26850.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: zinc finger protein-related (TAIR:AT3G18640.1); Has 91 Blast hits to 91 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 22; Fungi - 0; Plants - 49; Viruses - 4; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT3G26850.2p  transcript_id AT3G26850.2  protein_id AT3G26850.2p  transcript_id AT3G26850.2  
At3g26855	chr3:009899147	0.0	C/9899147-9899350,9898680-9898967	AT3G26855.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: reverse transcriptase-related (TAIR:AT2G02650.1); Has 97 Blast hits to 97 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G26855.1p  transcript_id AT3G26855.1  protein_id AT3G26855.1p  transcript_id AT3G26855.1  
At3g26860	chr3:009901516	0.0	C/9901516-9901884	AT3G26860.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27331.1); Has 41 Blast hits to 41 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G26860.2p  transcript_id AT3G26860.2  protein_id AT3G26860.2p  transcript_id AT3G26860.2  
At3g26860	chr3:009901701	0.0	C/9901701-9901884,9901516-9901619	AT3G26860.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27331.1); Has 21 Blast hits to 21 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G26860.1p  transcript_id AT3G26860.1  protein_id AT3G26860.1p  transcript_id AT3G26860.1  
At3g26870	chr3:009903288	0.0	C/9903288-9903680	AT3G26870.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product self-incompatibility protein-related  note self-incompatibility protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: self-incompatibility protein-related (TAIR:AT3G27680.1); Has 49 Blast hits to 49 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G26870.1p  transcript_id AT3G26870.1  protein_id AT3G26870.1p  transcript_id AT3G26870.1  
At3g26872	chr3:009904307	0.0	C/9904307-9904684	AT3G26872.1  pseudogenic_transcript  pseudo  function Pseudogene of AT3G26880; self-incompatibility protein-related  
At3g26880	chr3:009906334	0.0	C/9906334-9906735	AT3G26880.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product self-incompatibility protein-related  note self-incompatibility protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28305.1); Has 93 Blast hits to 93 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G26880.1p  transcript_id AT3G26880.1  protein_id AT3G26880.1p  transcript_id AT3G26880.1  
At3g26890	chr3:009909318	0.0	C/9909318-9910463,9908835-9909086,9908348-9908428,9907639-9908052,9907456-9907512	AT3G26890.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41110.1); Has 276 Blast hits to 268 proteins in 89 species: Archae - 0; Bacteria - 34; Metazoa - 154; Fungi - 44; Plants - 39; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G26890.1p  transcript_id AT3G26890.1  protein_id AT3G26890.1p  transcript_id AT3G26890.1  
At3g26890	chr3:009909318	0.0	C/9909318-9910463,9908835-9909086,9908348-9908428,9907639-9908052,9907456-9907512	AT3G26890.2  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41110.1); Has 276 Blast hits to 268 proteins in 89 species: Archae - 0; Bacteria - 34; Metazoa - 154; Fungi - 44; Plants - 39; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G26890.2p  transcript_id AT3G26890.2  protein_id AT3G26890.2p  transcript_id AT3G26890.2  
At3g26890	chr3:009909318	0.0	C/9909318-9910463,9908835-9909086,9908348-9908428,9907639-9908052,9907456-9907512	AT3G26890.3  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41110.1); Has 276 Blast hits to 268 proteins in 89 species: Archae - 0; Bacteria - 34; Metazoa - 154; Fungi - 44; Plants - 39; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G26890.3p  transcript_id AT3G26890.3  protein_id AT3G26890.3p  transcript_id AT3G26890.3  
At3g26890	chr3:009909318	0.0	C/9909318-9910463,9908835-9909086,9908348-9908428,9907639-9908052,9907456-9907512	AT3G26890.4  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41110.1); Has 276 Blast hits to 268 proteins in 89 species: Archae - 0; Bacteria - 34; Metazoa - 154; Fungi - 44; Plants - 39; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G26890.4p  transcript_id AT3G26890.4  protein_id AT3G26890.4p  transcript_id AT3G26890.4  
At3g26890	chr3:009909318	0.0	C/9909318-9910463,9908835-9909086,9908348-9908428,9907639-9908052,9907456-9907512	AT3G26890.5  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41110.1); Has 276 Blast hits to 268 proteins in 89 species: Archae - 0; Bacteria - 34; Metazoa - 154; Fungi - 44; Plants - 39; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G26890.5p  transcript_id AT3G26890.5  protein_id AT3G26890.5p  transcript_id AT3G26890.5  
At3g26900	chr3:009914235	0.0	C/9914235-9914424,9913963-9914003,9913810-9913864,9913631-9913703,9913212-9913299,9913002-9913084,9912774-9912873,9912607-9912685,9912462-9912526,9912314-9912382	AT3G26900.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_function shikimate kinase activity|GO:0004765||IEA  go_function ATP binding|GO:0005524||IEA  go_process aromatic amino acid family biosynthetic process|GO:0009073|1338949|TAS  product shikimate kinase family protein  note shikimate kinase family protein; FUNCTIONS IN: shikimate kinase activity, ATP binding; INVOLVED IN: aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Shikimate kinase (InterPro:IPR000623); BEST Arabidopsis thaliana protein match is: shikimate kinase, putative (TAIR:AT2G21940.5); Has 2498 Blast hits to 2498 proteins in 802 species: Archae - 4; Bacteria - 1660; Metazoa - 27; Fungi - 1; Plants - 77; Viruses - 0; Other Eukaryotes - 729 (source: NCBI BLink).  protein_id AT3G26900.1p  transcript_id AT3G26900.1  protein_id AT3G26900.1p  transcript_id AT3G26900.1  
At3g26900	chr3:009914235	0.0	C/9914235-9914424,9913963-9914003,9913810-9913864,9913631-9913703,9913212-9913299,9913002-9913084,9912774-9912873,9912607-9912685,9912462-9912526,9912314-9912382	AT3G26900.2  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_function shikimate kinase activity|GO:0004765||IEA  go_function ATP binding|GO:0005524||IEA  go_process aromatic amino acid family biosynthetic process|GO:0009073|1338949|TAS  product shikimate kinase family protein  note shikimate kinase family protein; FUNCTIONS IN: shikimate kinase activity, ATP binding; INVOLVED IN: aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Shikimate kinase (InterPro:IPR000623); BEST Arabidopsis thaliana protein match is: shikimate kinase, putative (TAIR:AT2G21940.5); Has 2498 Blast hits to 2498 proteins in 802 species: Archae - 4; Bacteria - 1660; Metazoa - 27; Fungi - 1; Plants - 77; Viruses - 0; Other Eukaryotes - 729 (source: NCBI BLink).  protein_id AT3G26900.2p  transcript_id AT3G26900.2  protein_id AT3G26900.2p  transcript_id AT3G26900.2  
At3g26900	chr3:009914235	0.0	C/9914235-9914424,9913963-9914003,9913810-9913864,9913631-9913703,9913212-9913299,9913002-9913084,9912774-9912873,9912607-9912685,9912462-9912526,9912314-9912382	AT3G26900.3  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_function shikimate kinase activity|GO:0004765||IEA  go_function ATP binding|GO:0005524||IEA  go_process aromatic amino acid family biosynthetic process|GO:0009073|1338949|TAS  product shikimate kinase family protein  note shikimate kinase family protein; FUNCTIONS IN: shikimate kinase activity, ATP binding; INVOLVED IN: aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Shikimate kinase (InterPro:IPR000623); BEST Arabidopsis thaliana protein match is: shikimate kinase, putative (TAIR:AT2G21940.5); Has 2498 Blast hits to 2498 proteins in 802 species: Archae - 4; Bacteria - 1660; Metazoa - 27; Fungi - 1; Plants - 77; Viruses - 0; Other Eukaryotes - 729 (source: NCBI BLink).  protein_id AT3G26900.3p  transcript_id AT3G26900.3  protein_id AT3G26900.3p  transcript_id AT3G26900.3  
At3g26910	chr3:009918392	0.0	C/9918392-9918511,9917966-9918038,9917798-9917869,9917664-9917725,9917506-9917574,9917392-9917420,9917104-9917305,9916763-9917002,9916629-9916682,9915629-9916526,9915304-9915329	AT3G26910.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41100.2); Has 2340 Blast hits to 1334 proteins in 234 species: Archae - 0; Bacteria - 108; Metazoa - 539; Fungi - 338; Plants - 325; Viruses - 56; Other Eukaryotes - 974 (source: NCBI BLink).  protein_id AT3G26910.2p  transcript_id AT3G26910.2  protein_id AT3G26910.2p  transcript_id AT3G26910.2  
At3g26910	chr3:009918392	0.0	C/9918392-9918511,9917966-9918038,9917798-9917869,9917664-9917725,9917506-9917574,9917392-9917420,9917104-9917305,9916763-9917002,9916629-9916682,9915629-9916526,9915338-9915345	AT3G26910.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41100.2); Has 2402 Blast hits to 1313 proteins in 233 species: Archae - 0; Bacteria - 105; Metazoa - 526; Fungi - 332; Plants - 321; Viruses - 56; Other Eukaryotes - 1062 (source: NCBI BLink).  protein_id AT3G26910.1p  transcript_id AT3G26910.1  protein_id AT3G26910.1p  transcript_id AT3G26910.1  
At3g26920	chr3:009921241	0.0	W/9921241-9921840,9921917-9922066,9922157-9922429	AT3G26920.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13965.1); Has 1853 Blast hits to 1457 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 1849; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G26920.1p  transcript_id AT3G26920.1  protein_id AT3G26920.1p  transcript_id AT3G26920.1  
At3g26922	chr3:009922858	0.0	W/9922858-9922868,9922982-9923891	AT3G26922.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G52680.2).  protein_id AT3G26922.1p  transcript_id AT3G26922.1  protein_id AT3G26922.1p  transcript_id AT3G26922.1  
At3g26930	chr3:009925931	0.0	W/9925931-9926689,9926780-9926914,9927016-9927351	AT3G26930.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13965.1); Has 678 Blast hits to 661 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 21; Fungi - 0; Plants - 651; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G26930.1p  transcript_id AT3G26930.1  protein_id AT3G26930.1p  transcript_id AT3G26930.1  
At3g26934	chr3:009928826	0.0	C/9928826-9929123,9928606-9928652,9928316-9928432	AT3G26934.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G26934.1p  transcript_id AT3G26934.1  protein_id AT3G26934.1p  transcript_id AT3G26934.1  
At3g26932	chr3:009931469	0.0	C/9931469-9931714,9931153-9931372,9930460-9931073	AT3G26932.1  CDS  gene_syn DRB3, MQP17_7, dsRNA-binding protein 3  gene DRB3  go_component intracellular|GO:0005622||IEA  go_function RNA binding|GO:0003723||IEA  go_function double-stranded RNA binding|GO:0003725||IEA  go_process biological_process|GO:0008150||ND  go_function double-stranded RNA binding|GO:0003725||ISS  product DRB3 (dsRNA-binding protein 3); RNA binding / double-stranded RNA binding  note dsRNA-binding protein 3 (DRB3); FUNCTIONS IN: double-stranded RNA binding, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: DRB5 (DSRNA-BINDING PROTEIN 5); double-stranded RNA binding (TAIR:AT5G41070.1); Has 447 Blast hits to 404 proteins in 113 species: Archae - 0; Bacteria - 156; Metazoa - 100; Fungi - 0; Plants - 131; Viruses - 2; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT3G26932.1p  transcript_id AT3G26932.1  protein_id AT3G26932.1p  transcript_id AT3G26932.1  
At3g26932	chr3:009931469	0.0	C/9931469-9931714,9931153-9931372,9930460-9931073	AT3G26932.2  CDS  gene_syn DRB3, MQP17_7, dsRNA-binding protein 3  gene DRB3  go_component intracellular|GO:0005622||IEA  go_function RNA binding|GO:0003723||IEA  go_function double-stranded RNA binding|GO:0003725||IEA  go_process biological_process|GO:0008150||ND  go_function double-stranded RNA binding|GO:0003725||ISS  product DRB3 (dsRNA-binding protein 3); RNA binding / double-stranded RNA binding  note dsRNA-binding protein 3 (DRB3); FUNCTIONS IN: double-stranded RNA binding, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: DRB5 (DSRNA-BINDING PROTEIN 5); double-stranded RNA binding (TAIR:AT5G41070.1); Has 447 Blast hits to 404 proteins in 113 species: Archae - 0; Bacteria - 156; Metazoa - 100; Fungi - 0; Plants - 131; Viruses - 2; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT3G26932.2p  transcript_id AT3G26932.2  protein_id AT3G26932.2p  transcript_id AT3G26932.2  
At3g26935	chr3:009935135	0.0	C/9935135-9935218,9934344-9934526,9933943-9934239,9933618-9933851,9933001-9933534	AT3G26935.1  CDS  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc finger (DHHC type) family protein  note zinc finger (DHHC type) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: zinc finger (DHHC type) family protein (TAIR:AT5G41060.1); Has 3999 Blast hits to 3989 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 1952; Fungi - 537; Plants - 411; Viruses - 0; Other Eukaryotes - 1099 (source: NCBI BLink).  protein_id AT3G26935.1p  transcript_id AT3G26935.1  protein_id AT3G26935.1p  transcript_id AT3G26935.1  
At3g26940	chr3:009938840	0.0	C/9938840-9938936,9938333-9938526,9938042-9938231,9937556-9937956,9936707-9937123	AT3G26940.1  CDS  gene_syn CDG1, CONSTITUTIVE DIFFERENTIAL GROWTH 1  gene CDG1  function Receptor-like cytoplasmic kinase, RLCKVII subfamily  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product CDG1 (CONSTITUTIVE DIFFERENTIAL GROWTH 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note CONSTITUTIVE DIFFERENTIAL GROWTH 1 (CDG1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G02800.1); Has 83253 Blast hits to 82188 proteins in 2892 species: Archae - 50; Bacteria - 7224; Metazoa - 37020; Fungi - 6285; Plants - 18514; Viruses - 331; Other Eukaryotes - 13829 (source: NCBI BLink).  protein_id AT3G26940.1p  transcript_id AT3G26940.1  protein_id AT3G26940.1p  transcript_id AT3G26940.1  
At3g26950	chr3:009943087	0.0	C/9943087-9943411,9942837-9942999,9942518-9942718,9942180-9942425,9941954-9942098,9941628-9941859,9941202-9941536	AT3G26950.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; Has 17 Blast hits to 17 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G26950.1p  transcript_id AT3G26950.1  protein_id AT3G26950.1p  transcript_id AT3G26950.1  
At3g26960	chr3:009945276	0.0	C/9945276-9945459,9944859-9945199	AT3G26960.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41050.1); Has 49 Blast hits to 49 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G26960.1p  transcript_id AT3G26960.1  protein_id AT3G26960.1p  transcript_id AT3G26960.1  
At3g26980	chr3:009947315	0.0	C/9947315-9947444,9946612-9946782,9946467-9946528	AT3G26980.1  CDS  gene_syn MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 4 PRECURSOR, MUB4  gene MUB4  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product MUB4 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 4 PRECURSOR)  note MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 4 PRECURSOR (MUB4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Membrane-anchored ubiquitin-fold protein, HCG-1 (InterPro:IPR017000), Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: ATGP4 (TAIR:AT4G24990.1); Has 103 Blast hits to 103 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 7; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G26980.1p  transcript_id AT3G26980.1  protein_id AT3G26980.1p  transcript_id AT3G26980.1  
At3g26990	chr3:009951482	0.0	C/9951482-9951557,9950851-9951098,9950583-9950702,9950286-9950454,9949553-9949692,9949432-9949467,9948426-9949178	AT3G26990.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), Regulation of nuclear pre-mRNA protein (InterPro:IPR006569), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10060.1); Has 815 Blast hits to 806 proteins in 138 species: Archae - 0; Bacteria - 10; Metazoa - 490; Fungi - 159; Plants - 81; Viruses - 1; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT3G26990.1p  transcript_id AT3G26990.1  protein_id AT3G26990.1p  transcript_id AT3G26990.1  
At3g27000	chr3:009955743	0.0	C/9955743-9955784,9955343-9955453,9955090-9955224,9954930-9955001,9954772-9954850,9954601-9954650,9954416-9954519,9954259-9954327,9954097-9954160,9953624-9953692,9953445-9953528,9953290-9953348,9953138-9953204,9952966-9953049,9952787-9952867	AT3G27000.1  CDS  gene_syn ACTIN RELATED PROTEIN 2, ARP2, ATARP2, WRM, WURM  gene ARP2  function encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. its transcript level is down regulated by light and is expressed in very low levels in all organs examined.  go_function protein binding|GO:0005515||IEA  go_component Arp2/3 protein complex|GO:0005885|12837952|TAS  go_process cell morphogenesis|GO:0000902|12837952|IMP  go_process actin filament organization|GO:0007015|12837952|IMP  go_process response to light stimulus|GO:0009416|10561069|IEP  go_process multidimensional cell growth|GO:0009825|12837952|IMP  go_process trichome morphogenesis|GO:0010090|15296761|IMP  go_process actin filament-based process|GO:0030029|10561069|TAS  go_process actin cytoskeleton organization|GO:0030036|12837952|TAS  go_function structural constituent of cytoskeleton|GO:0005200||ISS  product ARP2 (ACTIN RELATED PROTEIN 2); protein binding / structural constituent of cytoskeleton  note ACTIN RELATED PROTEIN 2 (ARP2); FUNCTIONS IN: protein binding, structural constituent of cytoskeleton; INVOLVED IN: in 7 processes; LOCATED IN: Arp2/3 protein complex; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: actin, putative (TAIR:AT2G42100.1); Has 9919 Blast hits to 9749 proteins in 2146 species: Archae - 2; Bacteria - 5; Metazoa - 4827; Fungi - 1968; Plants - 1089; Viruses - 2; Other Eukaryotes - 2026 (source: NCBI BLink).  protein_id AT3G27000.1p  transcript_id AT3G27000.1  protein_id AT3G27000.1p  transcript_id AT3G27000.1  
At3g27010	chr3:009957810	0.0	C/9957810-9958754	AT3G27010.1  CDS  gene_syn AT-TCP20, PCF1  gene AT-TCP20  function Belongs to a TCP protein transcription factor family. Members of this family contain a predicted basic-helix-loop-helix domain involved in DNA binding. Related to rice PCF1 and PCF2 genes. Binds to the GCCCR element of CYCB1;1. Involved in regulation of expression of cell cycle control and ribosomal protein genes.  go_component cellular_component|GO:0005575||ND  go_process cell cycle|GO:0007049|16123132|TAS  go_process anatomical structure morphogenesis|GO:0009653|12631321|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12631321|IDA  go_function transcription factor activity|GO:0003700||ISS  product AT-TCP20; transcription factor  note AT-TCP20; FUNCTIONS IN: transcription factor activity; INVOLVED IN: anatomical structure morphogenesis, cell cycle; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.10 ten leaves visible, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor, putative (TAIR:AT5G41030.1); Has 345 Blast hits to 340 proteins in 103 species: Archae - 0; Bacteria - 6; Metazoa - 2; Fungi - 0; Plants - 336; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G27010.1p  transcript_id AT3G27010.1  protein_id AT3G27010.1p  transcript_id AT3G27010.1  
At3g27020	chr3:009964101	0.0	C/9964101-9964461,9963711-9963883,9963530-9963627,9963301-9963438,9962932-9963121,9962683-9962815,9961623-9962560	AT3G27020.1  CDS  gene_syn YELLOW STRIPE LIKE 6, YSL6  gene YSL6  function Arabidopsis thaliana metal-nicotianamine transporter YSL6  go_component plasma membrane|GO:0005886|17151019|IDA  go_process oligopeptide transport|GO:0006857||ISS  go_function oligopeptide transporter activity|GO:0015198||ISS  product YSL6 (YELLOW STRIPE LIKE 6); oligopeptide transporter  note YELLOW STRIPE LIKE 6 (YSL6); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: YSL4 (YELLOW STRIPE LIKE 4); oligopeptide transporter (TAIR:AT5G41000.1); Has 931 Blast hits to 905 proteins in 268 species: Archae - 12; Bacteria - 416; Metazoa - 0; Fungi - 139; Plants - 246; Viruses - 1; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT3G27020.1p  transcript_id AT3G27020.1  protein_id AT3G27020.1p  transcript_id AT3G27020.1  
At3g27025	chr3:009969851	0.0	W/9969851-9969947,9970098-9970687,9970785-9970977,9971065-9971084	AT3G27025.1  CDS  gene_syn MOJ10.10  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; Has 8 Blast hits to 8 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G27025.1p  transcript_id AT3G27025.1  protein_id AT3G27025.1p  transcript_id AT3G27025.1  
At3g27027	chr3:009971921	0.0	W/9971921-9972130	AT3G27027.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40980.1); Has 168 Blast hits to 167 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 168; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G27027.1p  transcript_id AT3G27027.1  protein_id AT3G27027.1p  transcript_id AT3G27027.1  
At3g27030	chr3:009974029	0.0	C/9974029-9974225,9972508-9972739	AT3G27030.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40970.1); Has 334 Blast hits to 167 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 334; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G27030.1p  transcript_id AT3G27030.1  protein_id AT3G27030.1p  transcript_id AT3G27030.1  
At3g27040	chr3:009977818	0.0	C/9977818-9977927,9977613-9977743,9976053-9976182,9975812-9975972,9975451-9975665,9974912-9975241	AT3G27040.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT2G01790.1); Has 478 Blast hits to 298 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 36; Plants - 426; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT3G27040.1p  transcript_id AT3G27040.1  protein_id AT3G27040.1p  transcript_id AT3G27040.1  
At3g27050	chr3:009979546	0.0	C/9979546-9979636,9979429-9979469,9979096-9979153,9978902-9978995,9978743-9978827,9978599-9978664,9978286-9978399	AT3G27050.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G27050.1p  transcript_id AT3G27050.1  protein_id AT3G27050.1p  transcript_id AT3G27050.1  
At3g27060	chr3:009980550	0.0	C/9980550-9981057,9979971-9980461	AT3G27060.1  CDS  gene_syn TSO meaning  ugly  in Chinese, TSO2  gene TSO2  function Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes. TSO2 transcription occurs predominantly at the S-phase of the cell cycle and its expression pattern is consistent with its role in dNDP biosynthesis during DNA replication in actively dividing cells. Critical for cell cycle progression, DNA damage repair and plant development.  go_function ribonucleoside-diphosphate reductase activity|GO:0004748||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function transition metal ion binding|GO:0046914||IEA  go_component cellular_component|GO:0005575||ND  go_process DNA replication|GO:0006260|16399800|IMP  go_process DNA repair|GO:0006281|16399800|TAS  go_process multicellular organismal development|GO:0007275|16399800|IMP  go_process deoxyribonucleoside diphosphate metabolic process|GO:0009186||ISS  go_process programmed cell death|GO:0012501|16399800|IMP  go_process regulation of cell cycle|GO:0051726|16399800|IMP  go_function ribonucleoside-diphosphate reductase activity|GO:0004748||ISS  product TSO2 (TSO meaning  ugly  in Chinese); oxidoreductase/ ribonucleoside-diphosphate reductase/ transition metal ion binding  note TSO meaning  ugly  in Chinese (TSO2); FUNCTIONS IN: oxidoreductase activity, transition metal ion binding, ribonucleoside-diphosphate reductase activity; INVOLVED IN: in 6 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonucleotide reductase-related (InterPro:IPR012348), Ribonucleotide reductase (InterPro:IPR000358), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078); BEST Arabidopsis thaliana protein match is: RNR2A (RIBONUCLEOTIDE REDUCTASE 2A); ribonucleoside-diphosphate reductase (TAIR:AT3G23580.1); Has 7056 Blast hits to 7052 proteins in 1318 species: Archae - 10; Bacteria - 2301; Metazoa - 226; Fungi - 129; Plants - 138; Viruses - 657; Other Eukaryotes - 3595 (source: NCBI BLink).  protein_id AT3G27060.1p  transcript_id AT3G27060.1  protein_id AT3G27060.1p  transcript_id AT3G27060.1  
At3g27070	chr3:009984608	0.0	C/9984608-9984685,9984351-9984429,9983915-9984084,9983762-9983809,9983404-9983490,9983167-9983271	AT3G27070.1  CDS  gene_syn TOM20-1, translocase outer membrane 20-1  gene TOM20-1  function Form of TOM20, which is a component of the TOM complex, involved in transport of nuclear-encoded mitochondrial proteins  go_component mitochondrial outer membrane translocase complex|GO:0005742|11161051|IDA  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744|11161051|TAS  go_process protein targeting to mitochondrion|GO:0006626|11161051|TAS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450|11161051|TAS  product TOM20-1 (translocase outer membrane 20-1); P-P-bond-hydrolysis-driven protein transmembrane transporter  note translocase outer membrane 20-1 (TOM20-1); FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein targeting to mitochondrion; LOCATED IN: mitochondrial outer membrane translocase complex, mitochondrial inner membrane presequence translocase complex; EXPRESSED IN: inflorescence meristem, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Plant specific mitochondrial import receptor subunit TOM20 (InterPro:IPR010547); BEST Arabidopsis thaliana protein match is: TOM20-3 (TRANSLOCASE OF OUTER MEMBRANE 20 KDA SUBUNIT 3); P-P-bond-hydrolysis-driven protein transmembrane transporter (TAIR:AT3G27080.1); Has 53 Blast hits to 53 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G27070.1p  transcript_id AT3G27070.1  protein_id AT3G27070.1p  transcript_id AT3G27070.1  
At3g27080	chr3:009986465	0.0	C/9986465-9986560,9986269-9986347,9985824-9985993,9985678-9985725,9985474-9985563,9985212-9985337	AT3G27080.1  CDS  gene_syn TOM20-3, TRANSLOCASE OF OUTER MEMBRANE 20 KDA SUBUNIT 3  gene TOM20-3  function Component of the TOM complex involved in transport of nuclear-encoded mitochondrial proteins  go_component mitochondrion|GO:0005739|14730085|IDA  go_component mitochondrial outer membrane|GO:0005741|14730085|IDA  go_component mitochondrial outer membrane translocase complex|GO:0005742|11161051|IDA  go_component mitochondrial inner membrane|GO:0005743|14730085|IDA  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744|11161051|TAS  go_process protein targeting to mitochondrion|GO:0006626|11161051|TAS  go_process protein targeting to mitochondrion|GO:0006626|17981999|IMP  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450|11161051|TAS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450|16461275|IDA  product TOM20-3 (TRANSLOCASE OF OUTER MEMBRANE 20 KDA SUBUNIT 3); P-P-bond-hydrolysis-driven protein transmembrane transporter  note TRANSLOCASE OF OUTER MEMBRANE 20 KDA SUBUNIT 3 (TOM20-3); FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein targeting to mitochondrion; LOCATED IN: mitochondrial outer membrane, mitochondrion, mitochondrial inner membrane, mitochondrial outer membrane translocase complex, mitochondrial inner membrane presequence translocase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide region (InterPro:IPR013026), Plant specific mitochondrial import receptor subunit TOM20 (InterPro:IPR010547); BEST Arabidopsis thaliana protein match is: TOM20-1 (translocase outer membrane 20-1); P-P-bond-hydrolysis-driven protein transmembrane transporter (TAIR:AT3G27070.1); Has 51 Blast hits to 51 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G27080.1p  transcript_id AT3G27080.1  protein_id AT3G27080.1p  transcript_id AT3G27080.1  
At3g27090	chr3:009990020	0.0	W/9990020-9990569,9990653-9990753,9990855-9990938,9991030-9991140,9991363-9991407	AT3G27090.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Development and cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42050.1); Has 642 Blast hits to 564 proteins in 35 species: Archae - 0; Bacteria - 2; Metazoa - 12; Fungi - 0; Plants - 155; Viruses - 0; Other Eukaryotes - 473 (source: NCBI BLink).  protein_id AT3G27090.1p  transcript_id AT3G27090.1  protein_id AT3G27090.1p  transcript_id AT3G27090.1  
At3g27095	chr3:009991972	0.0	C/9991972-9994181	AT3G27095.1  pseudogenic_transcript  pseudo  gene_syn MOJ10.17  note pseudogene, hypothetical protein, similar to putative CHP-rich zinc finger protein GB:AAD22655 from (Arabidopsis thaliana)  
At3g27100	chr3:009995922	0.0	C/9995922-9995923,9995738-9995837,9995556-9995650,9994732-9994990	AT3G27100.2  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, enhancer of yellow 2 (InterPro:IPR018783); Has 157 Blast hits to 157 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT3G27100.2p  transcript_id AT3G27100.2  protein_id AT3G27100.2p  transcript_id AT3G27100.2  
At3g27100	chr3:009995922	0.0	C/9995922-9995923,9995738-9995837,9995556-9995650,9994914-9994990,9994743-9994816	AT3G27100.1  CDS  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, enhancer of yellow 2 (InterPro:IPR018783); Has 197 Blast hits to 197 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 152; Fungi - 8; Plants - 24; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT3G27100.1p  transcript_id AT3G27100.1  protein_id AT3G27100.1p  transcript_id AT3G27100.1  
At3g27110	chr3:009998006	0.0	W/9998006-9998257,9998453-9998510,9998592-9998659,9998746-9998925,9999052-9999148,9999324-9999433,9999536-9999669,9999757-9999892	AT3G27110.1  CDS  go_component chloroplast|GO:0009507||IEA  go_component membrane|GO:0016020||IEA  go_process proteolysis|GO:0006508||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_component membrane|GO:0016020||ISS  go_process proteolysis|GO:0006508||ISS  go_function metalloendopeptidase activity|GO:0004222||ISS  product peptidase M48 family protein  note peptidase M48 family protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M48, Ste24p (InterPro:IPR001915); Has 1644 Blast hits to 1644 proteins in 511 species: Archae - 158; Bacteria - 1140; Metazoa - 0; Fungi - 9; Plants - 21; Viruses - 0; Other Eukaryotes - 316 (source: NCBI BLink).  protein_id AT3G27110.1p  transcript_id AT3G27110.1  protein_id AT3G27110.1p  transcript_id AT3G27110.1  
At3g27110	chr3:009998006	0.0	W/9998006-9998257,9998453-9998510,9998592-9998659,9998746-9998925,9999052-9999148,9999324-9999433,9999536-9999669,9999757-9999892	AT3G27110.2  CDS  go_component chloroplast|GO:0009507||IEA  go_component membrane|GO:0016020||IEA  go_process proteolysis|GO:0006508||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_component membrane|GO:0016020||ISS  go_process proteolysis|GO:0006508||ISS  go_function metalloendopeptidase activity|GO:0004222||ISS  product peptidase M48 family protein  note peptidase M48 family protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M48, Ste24p (InterPro:IPR001915); Has 1644 Blast hits to 1644 proteins in 511 species: Archae - 158; Bacteria - 1140; Metazoa - 0; Fungi - 9; Plants - 21; Viruses - 0; Other Eukaryotes - 316 (source: NCBI BLink).  protein_id AT3G27110.2p  transcript_id AT3G27110.2  protein_id AT3G27110.2p  transcript_id AT3G27110.2  
At3g27120	chr3:010003026	0.0	C/10003026-10003265,10002672-10002907,10002098-10002225,10001897-10002015,10001719-10001811,10001405-10001506,10001128-10001230,10000957-10001040,10000771-10000866,10000504-10000631,10000248-10000349	AT3G27120.1  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ATPase activity|GO:0016887||ISS  product ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding  note ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Vps4 oligomerisation, C-terminal (InterPro:IPR015415); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27130.1); Has 22542 Blast hits to 21000 proteins in 1788 species: Archae - 846; Bacteria - 7492; Metazoa - 3997; Fungi - 2438; Plants - 1420; Viruses - 17; Other Eukaryotes - 6332 (source: NCBI BLink).  protein_id AT3G27120.1p  transcript_id AT3G27120.1  protein_id AT3G27120.1p  transcript_id AT3G27120.1  
At3g27130	chr3:010003857	0.0	C/10003857-10004281,10003444-10003582,10003026-10003313,10002659-10002907	AT3G27130.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (TAIR:AT3G27120.1); Has 12 Blast hits to 12 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G27130.1p  transcript_id AT3G27130.1  protein_id AT3G27130.1p  transcript_id AT3G27130.1  
At3g27140	chr3:010008124	0.0	C/10008124-10008174,10007700-10007825,10007540-10007641,10007116-10007439,10006891-10007025	AT3G27140.1  CDS  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT4G08260.1); Has 2577 Blast hits to 2577 proteins in 210 species: Archae - 0; Bacteria - 2; Metazoa - 892; Fungi - 282; Plants - 993; Viruses - 3; Other Eukaryotes - 405 (source: NCBI BLink).  protein_id AT3G27140.1p  transcript_id AT3G27140.1  protein_id AT3G27140.1p  transcript_id AT3G27140.1  
At3g27150	chr3:010009692	0.0	C/10009692-10010960	AT3G27150.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT5G40680.1); Has 6535 Blast hits to 3577 proteins in 184 species: Archae - 6; Bacteria - 211; Metazoa - 5379; Fungi - 20; Plants - 574; Viruses - 50; Other Eukaryotes - 295 (source: NCBI BLink).  protein_id AT3G27150.1p  transcript_id AT3G27150.1  protein_id AT3G27150.1p  transcript_id AT3G27150.1  
At3g27160	chr3:010017531	0.0	W/10017531-10017961,10018734-10018854	AT3G27160.1  CDS  gene_syn GHS1, GLUCOSE HYPERSENSITIVE 1  gene GHS1  function GHS1 encodes plastid ribosomal protein S21  go_component chloroplast|GO:0009507|15028209|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product GHS1 (GLUCOSE HYPERSENSITIVE 1); structural constituent of ribosome  note GLUCOSE HYPERSENSITIVE 1 (GHS1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S21 (InterPro:IPR001911); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT5G63300.1); Has 1104 Blast hits to 1104 proteins in 439 species: Archae - 0; Bacteria - 917; Metazoa - 0; Fungi - 4; Plants - 51; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).  protein_id AT3G27160.1p  transcript_id AT3G27160.1  protein_id AT3G27160.1p  transcript_id AT3G27160.1  
At3g27170	chr3:010024147	0.0	W/10024147-10024322,10024403-10024603,10024708-10024885,10024968-10025500,10025571-10026720,10026817-10026921	AT3G27170.1  CDS  gene_syn ATCLC-B, CHLORIDE CHANNEL B, CLC-B  gene CLC-B  function member of Anion channel protein family  go_process chloride transport|GO:0006821||IEA  go_component intracellular|GO:0005622|8969232|TAS  go_process chloride transport|GO:0006821||ISS  go_function voltage-gated chloride channel activity|GO:0005247||ISS  go_function anion channel activity|GO:0005253||ISS  product CLC-B (CHLORIDE CHANNEL B); anion channel/ voltage-gated chloride channel  note CHLORIDE CHANNEL B (CLC-B); FUNCTIONS IN: anion channel activity, voltage-gated chloride channel activity; INVOLVED IN: chloride transport; LOCATED IN: intracellular; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Chloride channel, core (InterPro:IPR014743), Chloride channel, voltage gated (InterPro:IPR001807), Chloride channel plant CLC (InterPro:IPR002251), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: ATCLC-A (CHLORIDE CHANNEL A); anion channel/ nitrate transmembrane transporter/ voltage-gated chloride channel (TAIR:AT5G40890.1); Has 4429 Blast hits to 4202 proteins in 979 species: Archae - 81; Bacteria - 2469; Metazoa - 873; Fungi - 216; Plants - 190; Viruses - 0; Other Eukaryotes - 600 (source: NCBI BLink).  protein_id AT3G27170.1p  transcript_id AT3G27170.1  protein_id AT3G27170.1p  transcript_id AT3G27170.1  
At3g27180	chr3:010029899	0.0	C/10029899-10030062,10029671-10029785,10029471-10029582,10029333-10029377,10029186-10029253,10029047-10029101,10028873-10028952,10028714-10028797,10028474-10028587,10028217-10028335,10027994-10028111,10027772-10027905,10027506-10027659,10027353-10027432,10027163-10027277	AT3G27180.1  CDS  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; Has 2427 Blast hits to 2424 proteins in 805 species: Archae - 31; Bacteria - 2080; Metazoa - 80; Fungi - 19; Plants - 37; Viruses - 0; Other Eukaryotes - 180 (source: NCBI BLink).  protein_id AT3G27180.1p  transcript_id AT3G27180.1  protein_id AT3G27180.1p  transcript_id AT3G27180.1  
At3g27190	chr3:010042722	0.0	C/10042722-10042917,10042369-10042460,10042228-10042297,10042031-10042149,10041800-10041896,10041392-10041471,10040928-10041122,10040757-10040840,10040612-10040672,10040367-10040427,10040052-10040145,10039894-10039966,10039725-10039807,10039504-10039650	AT3G27190.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||IEA  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_process biosynthetic process|GO:0009058||ISS  go_function uracil phosphoribosyltransferase activity|GO:0004845||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative  note uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative; FUNCTIONS IN: uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding; INVOLVED IN: biosynthetic process, metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083), Uridine kinase (InterPro:IPR000764); BEST Arabidopsis thaliana protein match is: AtUK/UPRT1 (Uridine kinase/Uracil phosphoribosyltransferase 1); ATP binding / kinase/ uracil phosphoribosyltransferase/ uridine kinase (TAIR:AT5G40870.1); Has 7291 Blast hits to 7283 proteins in 1429 species: Archae - 126; Bacteria - 4934; Metazoa - 451; Fungi - 327; Plants - 366; Viruses - 2; Other Eukaryotes - 1085 (source: NCBI BLink).  protein_id AT3G27190.1p  transcript_id AT3G27190.1  protein_id AT3G27190.1p  transcript_id AT3G27190.1  
At3g27200	chr3:010044175	0.0	C/10044175-10044340,10043738-10044096	AT3G27200.1  CDS  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function copper ion binding|GO:0005507||ISS  product plastocyanin-like domain-containing protein  note plastocyanin-like domain-containing protein; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: plastocyanin-like domain-containing protein (TAIR:AT5G07475.1); Has 928 Blast hits to 899 proteins in 76 species: Archae - 0; Bacteria - 19; Metazoa - 19; Fungi - 18; Plants - 826; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT3G27200.1p  transcript_id AT3G27200.1  protein_id AT3G27200.1p  transcript_id AT3G27200.1  
At3g27210	chr3:010047081	0.0	C/10047081-10047222,10046823-10046915,10045937-10046017,10045458-10045846	AT3G27210.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40860.1); Has 132 Blast hits to 70 proteins in 18 species: Archae - 0; Bacteria - 6; Metazoa - 65; Fungi - 6; Plants - 38; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT3G27210.1p  transcript_id AT3G27210.1  protein_id AT3G27210.1p  transcript_id AT3G27210.1  
At3g27220	chr3:010053376	0.0	C/10053376-10053594,10053020-10053205,10052713-10052942,10052465-10052632,10052273-10052378,10051990-10052196,10051742-10051906	AT3G27220.1  CDS  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  product kelch repeat-containing protein  note kelch repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51540.1); Has 1151 Blast hits to 1014 proteins in 139 species: Archae - 9; Bacteria - 157; Metazoa - 780; Fungi - 24; Plants - 44; Viruses - 48; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT3G27220.1p  transcript_id AT3G27220.1  protein_id AT3G27220.1p  transcript_id AT3G27220.1  
At3g27230	chr3:010054224	0.0	W/10054224-10055456	AT3G27230.1  CDS  go_component Golgi apparatus|GO:0005794|16618929|IDA  product unknown protein  note LOCATED IN: Golgi apparatus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: methyltransferase (TAIR:AT5G40830.2); Has 184 Blast hits to 183 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 182; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G27230.1p  transcript_id AT3G27230.1  protein_id AT3G27230.1p  transcript_id AT3G27230.1  
At3g27240	chr3:010058311	0.0	C/10058311-10058370,10057758-10057969,10057081-10057360,10056922-10056993,10056725-10056841,10056559-10056624,10056144-10056260	AT3G27240.1  CDS  go_component mitochondrion|GO:0005739|15276431|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial respiratory chain|GO:0005746||ISS  go_component mitochondrial respiratory chain complex III|GO:0005750|18189341|IDA  go_function electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity|GO:0045153||ISS  product cytochrome c1, putative  note cytochrome c1, putative; FUNCTIONS IN: electron carrier activity, iron ion binding, heme binding, electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c1 (InterPro:IPR002326), Cytochrome c, monohaem (InterPro:IPR009056); BEST Arabidopsis thaliana protein match is: cytochrome c1, putative (TAIR:AT5G40810.1); Has 2901 Blast hits to 2901 proteins in 507 species: Archae - 0; Bacteria - 704; Metazoa - 170; Fungi - 165; Plants - 63; Viruses - 0; Other Eukaryotes - 1799 (source: NCBI BLink).  protein_id AT3G27240.1p  transcript_id AT3G27240.1  protein_id AT3G27240.1p  transcript_id AT3G27240.1  
At3g27250	chr3:010061633	0.0	W/10061633-10062481	AT3G27250.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40800.1); Has 38 Blast hits to 38 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G27250.1p  transcript_id AT3G27250.1  protein_id AT3G27250.1p  transcript_id AT3G27250.1  
At3g27260	chr3:010068411	0.0	W/10068411-10069643,10069721-10069763,10069859-10069921,10070151-10070221,10070300-10070372,10070646-10070726,10070816-10070925,10071296-10071365,10071509-10071651,10071849-10072403	AT3G27260.1  CDS  gene_syn GLOBAL TRANSCRIPTION FACTOR GROUP E, GTE8  gene GTE8  function Kinase like protein with similarity to yeast BDF1 and human RING3 protein, which have two bromodomains GTE8 has a single bromodomain  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product GTE8; DNA binding  note GTE8; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: ATBET9 (Arabidopsis thaliana Bromodomain and Extraterminal Domain protein 9); DNA binding (TAIR:AT5G14270.1); Has 12706 Blast hits to 9585 proteins in 753 species: Archae - 9; Bacteria - 1696; Metazoa - 5449; Fungi - 1538; Plants - 594; Viruses - 62; Other Eukaryotes - 3358 (source: NCBI BLink).  protein_id AT3G27260.1p  transcript_id AT3G27260.1  protein_id AT3G27260.1p  transcript_id AT3G27260.1  
At3g27270	chr3:010073315	0.0	W/10073315-10074064	AT3G27270.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: sperm cell, leaf whorl, embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related (TAIR:AT5G14280.1); Has 41 Blast hits to 41 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G27270.1p  transcript_id AT3G27270.1  protein_id AT3G27270.1p  transcript_id AT3G27270.1  
At3g27280	chr3:010076904	0.0	W/10076904-10077215,10077524-10078051	AT3G27280.1  CDS  gene_syn ATPHB4, PROHIBITIN 4  gene ATPHB4  function Part of protein complexes that are necessary for proficient mitochondrial function or biogenesis, thereby supporting cell division and differentiation in apical tissues  go_component mitochondrion|GO:0005739|15276431|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|17883375|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process response to stress|GO:0006950|17883375|IMP  product ATPHB4 (PROHIBITIN 4)  note PROHIBITIN 4 (ATPHB4); INVOLVED IN: response to stress; LOCATED IN: in 6 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prohibitin (InterPro:IPR000163), Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: ATPHB3 (PROHIBITIN 3) (TAIR:AT5G40770.1); Has 3602 Blast hits to 3602 proteins in 998 species: Archae - 140; Bacteria - 1889; Metazoa - 527; Fungi - 182; Plants - 175; Viruses - 11; Other Eukaryotes - 678 (source: NCBI BLink).  protein_id AT3G27280.1p  transcript_id AT3G27280.1  protein_id AT3G27280.1p  transcript_id AT3G27280.1  
At3g27280	chr3:010076904	0.0	W/10076904-10077215,10077524-10078051	AT3G27280.2  CDS  gene_syn ATPHB4, PROHIBITIN 4  gene ATPHB4  function Part of protein complexes that are necessary for proficient mitochondrial function or biogenesis, thereby supporting cell division and differentiation in apical tissues  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|17883375|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process response to stress|GO:0006950|17883375|IMP  product ATPHB4 (PROHIBITIN 4)  note PROHIBITIN 4 (ATPHB4); INVOLVED IN: response to stress; LOCATED IN: mitochondrion, plasma membrane, vacuole, respiratory chain complex I, plant-type cell wall; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prohibitin (InterPro:IPR000163), Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: ATPHB3 (PROHIBITIN 3) (TAIR:AT5G40770.1); Has 3602 Blast hits to 3602 proteins in 998 species: Archae - 140; Bacteria - 1889; Metazoa - 527; Fungi - 182; Plants - 175; Viruses - 11; Other Eukaryotes - 678 (source: NCBI BLink).  protein_id AT3G27280.2p  transcript_id AT3G27280.2  protein_id AT3G27280.2p  transcript_id AT3G27280.2  
At3g27283	chr3:010078590	0.0	C/10078590-10078820	AT3G27283.1  pseudogenic_transcript  pseudo  function Encodes a defensin-like (DEFL) family protein.  
At3g27290	chr3:010080600	0.0	C/10080600-10081265,10080038-10080520	AT3G27290.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G26000.1); Has 212 Blast hits to 206 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 144; Fungi - 4; Plants - 59; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G27290.1p  transcript_id AT3G27290.1  protein_id AT3G27290.1p  transcript_id AT3G27290.1  
At3g27300	chr3:010086115	0.0	C/10086115-10086288,10085930-10086015,10085789-10085852,10085529-10085715,10085287-10085444,10085136-10085204,10084989-10085047,10084855-10084891,10084632-10084703,10084359-10084506,10084136-10084231,10083989-10084059,10083760-10083875,10083631-10083676,10083318-10083485	AT3G27300.1  CDS  gene_syn G6PD5, glucose-6-phosphate dehydrogenase 5  gene G6PD5  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytosol|GO:0005829|15634201|ISS  go_process glucose metabolic process|GO:0006006|15634201|IDA  go_process glucose metabolic process|GO:0006006||ISS  go_process pentose-phosphate shunt, oxidative branch|GO:0009051|15634201|IDA  go_function glucose-6-phosphate dehydrogenase activity|GO:0004345|15634201|IDA  go_function glucose-6-phosphate dehydrogenase activity|GO:0004345||ISS  product G6PD5 (glucose-6-phosphate dehydrogenase 5); glucose-6-phosphate dehydrogenase  note glucose-6-phosphate dehydrogenase 5 (G6PD5); FUNCTIONS IN: glucose-6-phosphate dehydrogenase activity; INVOLVED IN: response to cadmium ion, pentose-phosphate shunt, oxidative branch, glucose metabolic process; LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose-6-phosphate dehydrogenase (InterPro:IPR001282); BEST Arabidopsis thaliana protein match is: G6PD6 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 6); glucose-6-phosphate dehydrogenase (TAIR:AT5G40760.1); Has 5512 Blast hits to 5496 proteins in 1288 species: Archae - 0; Bacteria - 3299; Metazoa - 673; Fungi - 121; Plants - 283; Viruses - 2; Other Eukaryotes - 1134 (source: NCBI BLink).  protein_id AT3G27300.1p  transcript_id AT3G27300.1  protein_id AT3G27300.1p  transcript_id AT3G27300.1  
At3g27300	chr3:010086115	0.0	C/10086115-10086288,10085930-10086015,10085789-10085852,10085529-10085715,10085287-10085444,10085136-10085204,10084989-10085047,10084855-10084891,10084632-10084703,10084359-10084506,10084136-10084231,10083989-10084059,10083760-10083875,10083631-10083676,10083318-10083485	AT3G27300.2  CDS  gene_syn G6PD5, glucose-6-phosphate dehydrogenase 5  gene G6PD5  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytosol|GO:0005829|15634201|ISS  go_process glucose metabolic process|GO:0006006|15634201|IDA  go_process glucose metabolic process|GO:0006006||ISS  go_process pentose-phosphate shunt, oxidative branch|GO:0009051|15634201|IDA  go_function glucose-6-phosphate dehydrogenase activity|GO:0004345|15634201|IDA  go_function glucose-6-phosphate dehydrogenase activity|GO:0004345||ISS  product G6PD5 (glucose-6-phosphate dehydrogenase 5); glucose-6-phosphate dehydrogenase  note glucose-6-phosphate dehydrogenase 5 (G6PD5); FUNCTIONS IN: glucose-6-phosphate dehydrogenase activity; INVOLVED IN: response to cadmium ion, pentose-phosphate shunt, oxidative branch, glucose metabolic process; LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose-6-phosphate dehydrogenase (InterPro:IPR001282); BEST Arabidopsis thaliana protein match is: G6PD6 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 6); glucose-6-phosphate dehydrogenase (TAIR:AT5G40760.1); Has 5512 Blast hits to 5496 proteins in 1288 species: Archae - 0; Bacteria - 3299; Metazoa - 673; Fungi - 121; Plants - 283; Viruses - 2; Other Eukaryotes - 1134 (source: NCBI BLink).  protein_id AT3G27300.2p  transcript_id AT3G27300.2  protein_id AT3G27300.2p  transcript_id AT3G27300.2  
At3g27300	chr3:010086115	0.0	C/10086115-10086288,10085930-10086015,10085789-10085852,10085529-10085715,10085287-10085444,10085136-10085204,10084989-10085047,10084855-10084891,10084632-10084703,10084359-10084506,10084136-10084231,10083989-10084059,10083760-10083875,10083631-10083676,10083318-10083485	AT3G27300.3  CDS  gene_syn G6PD5, glucose-6-phosphate dehydrogenase 5  gene G6PD5  go_component chloroplast|GO:0009507|18431481|IDA  go_component cytosol|GO:0005829|15634201|ISS  go_process glucose metabolic process|GO:0006006|15634201|IDA  go_process glucose metabolic process|GO:0006006||ISS  go_process pentose-phosphate shunt, oxidative branch|GO:0009051|15634201|IDA  go_function glucose-6-phosphate dehydrogenase activity|GO:0004345|15634201|IDA  go_function glucose-6-phosphate dehydrogenase activity|GO:0004345||ISS  product G6PD5 (glucose-6-phosphate dehydrogenase 5); glucose-6-phosphate dehydrogenase  note glucose-6-phosphate dehydrogenase 5 (G6PD5); FUNCTIONS IN: glucose-6-phosphate dehydrogenase activity; INVOLVED IN: pentose-phosphate shunt, oxidative branch, glucose metabolic process; LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose-6-phosphate dehydrogenase (InterPro:IPR001282); BEST Arabidopsis thaliana protein match is: G6PD6 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 6); glucose-6-phosphate dehydrogenase (TAIR:AT5G40760.1); Has 5512 Blast hits to 5496 proteins in 1288 species: Archae - 0; Bacteria - 3299; Metazoa - 673; Fungi - 121; Plants - 283; Viruses - 2; Other Eukaryotes - 1134 (source: NCBI BLink).  protein_id AT3G27300.3p  transcript_id AT3G27300.3  protein_id AT3G27300.3p  transcript_id AT3G27300.3  
At3g27310	chr3:010088991	0.0	C/10088991-10089077,10088696-10088792,10088536-10088607,10088280-10088347,10088075-10088204,10087891-10087995,10087360-10087556	AT3G27310.1  CDS  gene_syn K17E12.13, PLANT UBX DOMAIN-CONTAINING PROTEIN 1, PUX1  gene PUX1  function encodes a protein that contains a UBX domain and regulates AtCDC48 by inhibiting its ATPase activity and by promoting the disassembly of the active hexamer. Phenotypic analysis of pux1 plants revealed that the loss of PUX1 accelerated the growth of various plant organs including roots and inflorescence shoots. AtCDC48 and SYP31 colocalize at the division plane during cytokinesis and to interact in vitro and in vivo.  go_component soluble fraction|GO:0005625|15498773|IDA  go_process organ growth|GO:0035265|15498773|IMP  go_process protein complex disassembly|GO:0043241|15498773|IDA  product PUX1 (PLANT UBX DOMAIN-CONTAINING PROTEIN 1)  note PLANT UBX DOMAIN-CONTAINING PROTEIN 1 (PUX1); INVOLVED IN: protein complex disassembly, organ growth; LOCATED IN: soluble fraction; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012); Has 307 Blast hits to 306 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 194; Fungi - 33; Plants - 43; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT3G27310.1p  transcript_id AT3G27310.1  protein_id AT3G27310.1p  transcript_id AT3G27310.1  
At3g27320	chr3:010090307	0.0	W/10090307-10090592,10090689-10091151,10091854-10092391	AT3G27320.2  CDS  go_process metabolic process|GO:0008152||IEA  go_function hydrolase activity|GO:0016787||IEA  product hydrolase  note hydrolase; FUNCTIONS IN: hydrolase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: AtCXE16 (Arabidopsis thaliana carboxyesterase 16); hydrolase (TAIR:AT5G14310.1); Has 4330 Blast hits to 4322 proteins in 750 species: Archae - 47; Bacteria - 2238; Metazoa - 264; Fungi - 386; Plants - 631; Viruses - 3; Other Eukaryotes - 761 (source: NCBI BLink).  protein_id AT3G27320.2p  transcript_id AT3G27320.2  protein_id AT3G27320.2p  transcript_id AT3G27320.2  
At3g27320	chr3:010090307	0.0	W/10090307-10091151,10091854-10092391	AT3G27320.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function hydrolase activity|GO:0016787||IEA  product hydrolase  note hydrolase; FUNCTIONS IN: hydrolase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: AtCXE16 (Arabidopsis thaliana carboxyesterase 16); hydrolase (TAIR:AT5G14310.1); Has 4326 Blast hits to 4318 proteins in 749 species: Archae - 47; Bacteria - 2238; Metazoa - 264; Fungi - 384; Plants - 631; Viruses - 3; Other Eukaryotes - 759 (source: NCBI BLink).  protein_id AT3G27320.1p  transcript_id AT3G27320.1  protein_id AT3G27320.1p  transcript_id AT3G27320.1  
At3g27321	chr3:010092859	0.0	C/10092859-10093129	AT3G27321.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G08985; DNA-binding protein  
At3g27325	chr3:010096224	0.0	W/10096224-10096532,10096801-10097046,10097253-10097443,10097522-10097693,10097837-10097974,10098048-10098219,10098503-10098624,10098723-10098899,10099007-10099117,10099217-10099336,10099447-10099603,10099797-10099957,10100049-10100135,10100369-10100697,10100790-10100871,10101016-10101155,10101367-10101589,10101767-10102087	AT3G27325.1  CDS  go_component plasma membrane|GO:0005886|17151019|IDA  go_process GPI anchor metabolic process|GO:0006505||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  product hydrolase, acting on ester bonds  note hydrolase, acting on ester bonds; FUNCTIONS IN: hydrolase activity, acting on ester bonds; INVOLVED IN: intracellular protein transport, GPI anchor metabolic process; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: PGAP1-like (InterPro:IPR012908); Has 251 Blast hits to 242 proteins in 119 species: Archae - 0; Bacteria - 15; Metazoa - 89; Fungi - 109; Plants - 24; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT3G27325.1p  transcript_id AT3G27325.1  protein_id AT3G27325.1p  transcript_id AT3G27325.1  
At3g27327	chr3:010106739	0.0	W/10106739-10110813	AT3G27327.1  mRNA_TE_gene  pseudo  gene_syn K1G2.3  note Transposable element gene, copia-like retrotransposon family, has a 3.7e-320 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At3g27328	chr3:010111642	0.0	W/10111642-10111794	AT3G27328.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G27328.1p  transcript_id AT3G27328.1  protein_id AT3G27328.1p  transcript_id AT3G27328.1  
At3g27329	chr3:010114192	0.0	W/10114192-10114560	AT3G27329.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27331.1); Has 48 Blast hits to 48 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G27329.1p  transcript_id AT3G27329.1  protein_id AT3G27329.1p  transcript_id AT3G27329.1  
At3g27331	chr3:010115541	0.0	W/10115541-10115551,10115903-10116278	AT3G27331.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27329.1); Has 48 Blast hits to 48 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G27331.1p  transcript_id AT3G27331.1  protein_id AT3G27331.1p  transcript_id AT3G27331.1  
At3g27330	chr3:010118849	0.0	C/10118849-10120516,10118187-10118473,10118019-10118089,10117771-10117919,10117623-10117672,10117469-10117543,10116950-10117391	AT3G27330.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Protein of unknown function DUF23 (InterPro:IPR008166); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40720.1); Has 6969 Blast hits to 6918 proteins in 1619 species: Archae - 0; Bacteria - 145; Metazoa - 5625; Fungi - 356; Plants - 343; Viruses - 13; Other Eukaryotes - 487 (source: NCBI BLink).  protein_id AT3G27330.1p  transcript_id AT3G27330.1  protein_id AT3G27330.1p  transcript_id AT3G27330.1  
At3g27340	chr3:010121303	0.0	W/10121303-10121401,10121488-10121595,10122354-10122418,10122532-10122550	AT3G27340.2  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF971 (InterPro:IPR010376); Has 469 Blast hits to 469 proteins in 186 species: Archae - 0; Bacteria - 323; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).  protein_id AT3G27340.2p  transcript_id AT3G27340.2  protein_id AT3G27340.2p  transcript_id AT3G27340.2  
At3g27340	chr3:010121303	0.0	W/10121303-10121401,10121488-10121595,10122354-10122418,10122539-10122692	AT3G27340.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF971 (InterPro:IPR010376); Has 707 Blast hits to 707 proteins in 252 species: Archae - 0; Bacteria - 455; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 229 (source: NCBI BLink).  protein_id AT3G27340.1p  transcript_id AT3G27340.1  protein_id AT3G27340.1p  transcript_id AT3G27340.1  
At3g27340	chr3:010121303	0.0	W/10121303-10121401,10121488-10121595,10122354-10122418,10122563-10122692	AT3G27340.3  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF971 (InterPro:IPR010376); Has 623 Blast hits to 623 proteins in 244 species: Archae - 0; Bacteria - 406; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 194 (source: NCBI BLink).  protein_id AT3G27340.3p  transcript_id AT3G27340.3  protein_id AT3G27340.3p  transcript_id AT3G27340.3  
At3g27350	chr3:010126238	0.0	W/10126238-10126309,10126573-10127144,10127238-10127300,10127397-10127448,10127535-10127600	AT3G27350.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40700.1); Has 156 Blast hits to 128 proteins in 29 species: Archae - 0; Bacteria - 3; Metazoa - 69; Fungi - 4; Plants - 63; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT3G27350.1p  transcript_id AT3G27350.1  protein_id AT3G27350.1p  transcript_id AT3G27350.1  
At3g27360	chr3:010129459	0.0	C/10129459-10129869	AT3G27360.1  CDS  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product histone H3  note histone H3; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, chloroplast, nucleosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H3 (TAIR:AT5G65360.1); Has 10220 Blast hits to 10217 proteins in 5279 species: Archae - 0; Bacteria - 0; Metazoa - 7338; Fungi - 1307; Plants - 999; Viruses - 0; Other Eukaryotes - 576 (source: NCBI BLink).  protein_id AT3G27360.1p  transcript_id AT3G27360.1  protein_id AT3G27360.1p  transcript_id AT3G27360.1  
At3g27380	chr3:010132000	0.0	C/10132000-10132673,10131209-10131374	AT3G27380.1  CDS  gene_syn SDH2-1  gene SDH2-1  function One of three isoforms of the iron-sulfur component of the succinate dehydrogenase complex, a component of the mitochondrial respiratory chain complex II. The product of the nuclear encoded gene is imported into the mitochondrion. Expressed during germination and post-germinative growth.  go_component mitochondrion|GO:0005739|15276431|IDA  go_component mitochondrion|GO:0005739|11442063|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component succinate dehydrogenase complex|GO:0045281|11442063|ISS  go_process mitochondrial electron transport, succinate to ubiquinone|GO:0006121|11442063|ISS  go_function succinate dehydrogenase activity|GO:0000104|11442063|ISS  go_function electron carrier activity|GO:0009055|11442063|ISS  product SDH2-1; electron carrier/ succinate dehydrogenase  note SDH2-1; FUNCTIONS IN: electron carrier activity, succinate dehydrogenase activity; INVOLVED IN: mitochondrial electron transport, succinate to ubiquinone; LOCATED IN: mitochondrion, succinate dehydrogenase complex; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), Fumarate reductase, C-terminal (InterPro:IPR012285), 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), 4Fe-4S ferredoxin, iron-sulpur binding domain (InterPro:IPR017896), 4Fe-4S ferredoxin, iron-sulphur binding, conserved site (InterPro:IPR017900), Alpha-helical ferredoxin (InterPro:IPR009051), Succinate dehydrogenase/fumarate reductase iron-sulphur protein (InterPro:IPR004489); BEST Arabidopsis thaliana protein match is: SDH2-2; electron carrier/ succinate dehydrogenase (TAIR:AT5G40650.1); Has 6420 Blast hits to 6418 proteins in 1284 species: Archae - 112; Bacteria - 2983; Metazoa - 227; Fungi - 121; Plants - 98; Viruses - 0; Other Eukaryotes - 2879 (source: NCBI BLink).  protein_id AT3G27380.1p  transcript_id AT3G27380.1  protein_id AT3G27380.1p  transcript_id AT3G27380.1  
At3g27380	chr3:010132000	0.0	C/10132000-10132673,10131209-10131374	AT3G27380.2  CDS  gene_syn SDH2-1  gene SDH2-1  function One of three isoforms of the iron-sulfur component of the succinate dehydrogenase complex, a component of the mitochondrial respiratory chain complex II. The product of the nuclear encoded gene is imported into the mitochondrion. Expressed during germination and post-germinative growth.  go_component mitochondrion|GO:0005739|11442063|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component succinate dehydrogenase complex|GO:0045281|11442063|ISS  go_process mitochondrial electron transport, succinate to ubiquinone|GO:0006121|11442063|ISS  go_function succinate dehydrogenase activity|GO:0000104|11442063|ISS  go_function electron carrier activity|GO:0009055|11442063|ISS  product SDH2-1; electron carrier/ succinate dehydrogenase  note SDH2-1; FUNCTIONS IN: electron carrier activity, succinate dehydrogenase activity; INVOLVED IN: mitochondrial electron transport, succinate to ubiquinone; LOCATED IN: mitochondrion, succinate dehydrogenase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), Fumarate reductase, C-terminal (InterPro:IPR012285), 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), 4Fe-4S ferredoxin, iron-sulpur binding domain (InterPro:IPR017896), 4Fe-4S ferredoxin, iron-sulphur binding, conserved site (InterPro:IPR017900), Alpha-helical ferredoxin (InterPro:IPR009051), Succinate dehydrogenase/fumarate reductase iron-sulphur protein (InterPro:IPR004489); BEST Arabidopsis thaliana protein match is: SDH2-2; electron carrier/ succinate dehydrogenase (TAIR:AT5G40650.1); Has 6420 Blast hits to 6418 proteins in 1284 species: Archae - 112; Bacteria - 2983; Metazoa - 227; Fungi - 121; Plants - 98; Viruses - 0; Other Eukaryotes - 2879 (source: NCBI BLink).  protein_id AT3G27380.2p  transcript_id AT3G27380.2  protein_id AT3G27380.2p  transcript_id AT3G27380.2  
At3g27390	chr3:010136018	0.0	C/10136018-10136111,10135381-10135489,10134963-10135289,10134349-10134880,10134072-10134267,10133721-10133970,10133372-10133630	AT3G27390.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40640.1); Has 56 Blast hits to 56 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G27390.1p  transcript_id AT3G27390.1  protein_id AT3G27390.1p  transcript_id AT3G27390.1  
At3g27400	chr3:010140323	0.0	W/10140323-10140456,10141149-10141591,10141697-10141997,10142587-10142725,10142802-10143023	AT3G27400.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function pectate lyase activity|GO:0030570||ISS  product pectate lyase family protein  note pectate lyase family protein; FUNCTIONS IN: pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectate lyase family protein (TAIR:AT4G24780.1); Has 907 Blast hits to 902 proteins in 165 species: Archae - 0; Bacteria - 399; Metazoa - 0; Fungi - 104; Plants - 396; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT3G27400.1p  transcript_id AT3G27400.1  protein_id AT3G27400.1p  transcript_id AT3G27400.1  
At3g27410	chr3:010145244	0.0	C/10145244-10145642	AT3G27410.1  CDS  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G27410.1p  transcript_id AT3G27410.1  protein_id AT3G27410.1p  transcript_id AT3G27410.1  
At3g27416	chr3:010147371	0.0	C/10147371-10147886	AT3G27416.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 389 Blast hits to 362 proteins in 51 species: Archae - 0; Bacteria - 37; Metazoa - 207; Fungi - 19; Plants - 4; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT3G27416.1p  transcript_id AT3G27416.1  protein_id AT3G27416.1p  transcript_id AT3G27416.1  
At3g27415	chr3:010147375	0.0	W/10147375-10147902	AT3G27415.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 79 Blast hits to 73 proteins in 31 species: Archae - 2; Bacteria - 26; Metazoa - 37; Fungi - 1; Plants - 9; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G27415.1p  transcript_id AT3G27415.1  protein_id AT3G27415.1p  transcript_id AT3G27415.1  
At3g27420	chr3:010148949	0.0	W/10148949-10149203,10149274-10149378,10149465-10149551,10149637-10149695,10149819-10149972,10150065-10150139	AT3G27420.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40600.1); Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G27420.1p  transcript_id AT3G27420.1  protein_id AT3G27420.1p  transcript_id AT3G27420.1  
At3g27425	chr3:010151058	0.0	W/10151058-10151375	AT3G27425.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01324.1); Has 17 Blast hits to 17 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G27425.1p  transcript_id AT3G27425.1  protein_id AT3G27425.1p  transcript_id AT3G27425.1  
At3g27430	chr3:010152910	0.0	W/10152910-10153053,10153551-10153692,10153825-10153921,10153998-10154067,10154163-10154267,10154348-10154446,10154776-10154863,10154976-10155052	AT3G27430.2  CDS  gene_syn 20S PROTEASOME BETA SUBUNIT PBB1, PBB1  gene PBB1  function Encodes 20S proteasome beta subunit PBB1 (PBB1).  go_function endopeptidase activity|GO:0004175||IEA  go_function threonine-type endopeptidase activity|GO:0004298||IEA  go_component proteasome core complex|GO:0005839|9373170|TAS  go_component proteasome core complex|GO:0005839|9611183|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_function peptidase activity|GO:0008233||ISS  product PBB1; endopeptidase/ peptidase/ threonine-type endopeptidase  note PBB1; FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Peptidase T1A, proteasome beta-subunit (InterPro:IPR000243), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: PBB2; endopeptidase/ peptidase/ threonine-type endopeptidase (TAIR:AT5G40580.2); Has 4218 Blast hits to 4217 proteins in 393 species: Archae - 489; Bacteria - 170; Metazoa - 1568; Fungi - 857; Plants - 416; Viruses - 0; Other Eukaryotes - 718 (source: NCBI BLink).  protein_id AT3G27430.2p  transcript_id AT3G27430.2  protein_id AT3G27430.2p  transcript_id AT3G27430.2  
At3g27430	chr3:010152910	0.0	W/10152910-10153053,10153551-10153692,10153825-10153921,10153998-10154067,10154163-10154267,10154348-10154446,10154776-10154863,10154978-10155036	AT3G27430.1  CDS  gene_syn 20S PROTEASOME BETA SUBUNIT PBB1, PBB1  gene PBB1  function Encodes 20S proteasome beta subunit PBB1 (PBB1).  go_function endopeptidase activity|GO:0004175||IEA  go_function threonine-type endopeptidase activity|GO:0004298||IEA  go_component proteasome core complex|GO:0005839|9373170|TAS  go_component proteasome core complex|GO:0005839|9611183|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_function peptidase activity|GO:0008233||ISS  product PBB1; endopeptidase/ peptidase/ threonine-type endopeptidase  note PBB1; FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Peptidase T1A, proteasome beta-subunit (InterPro:IPR000243), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: PBB2; endopeptidase/ peptidase/ threonine-type endopeptidase (TAIR:AT5G40580.2); Has 4214 Blast hits to 4213 proteins in 393 species: Archae - 489; Bacteria - 170; Metazoa - 1567; Fungi - 854; Plants - 416; Viruses - 0; Other Eukaryotes - 718 (source: NCBI BLink).  protein_id AT3G27430.1p  transcript_id AT3G27430.1  protein_id AT3G27430.1p  transcript_id AT3G27430.1  
At3g27440	chr3:010155555	0.0	W/10155555-10155651,10155728-10155819,10155898-10155967,10156053-10156168,10156252-10156348,10156430-10156509,10156587-10156865,10156956-10157016,10157095-10157155,10157239-10157332,10157414-10157486,10157567-10157649,10157737-10157931	AT3G27440.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||IEA  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_component cellular_component|GO:0005575||ND  go_process biosynthetic process|GO:0009058||ISS  go_function uracil phosphoribosyltransferase activity|GO:0004845||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative  note uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative; FUNCTIONS IN: uracil phosphoribosyltransferase activity, kinase activity, phosphotransferase activity, alcohol group as acceptor, ATP binding; INVOLVED IN: biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083), Uridine kinase (InterPro:IPR000764); BEST Arabidopsis thaliana protein match is: ATP binding / kinase/ phosphotransferase, alcohol group as acceptor / uracil phosphoribosyltransferase (TAIR:AT4G26510.2); Has 7601 Blast hits to 7594 proteins in 1441 species: Archae - 128; Bacteria - 5054; Metazoa - 470; Fungi - 349; Plants - 367; Viruses - 2; Other Eukaryotes - 1231 (source: NCBI BLink).  protein_id AT3G27440.1p  transcript_id AT3G27440.1  protein_id AT3G27440.1p  transcript_id AT3G27440.1  
At3g27450	chr3:010158314	0.0	C/10158314-10159194	AT3G27450.1  pseudogenic_transcript  pseudo  note pseudogene, 40S ribosomal protein S21 (RPS21A), similar to 40S ribosomal subunit protein S21 GB:CAA70852 (Zea mays); contains Pfam profile: PF01249 ribosomal protein S21e; can not identify a start codon for an ORF; blastp match of 81% identity and 4.5e-23 P-value to GP|1707868|emb|CAA70852.1||Y09636 40S ribosomal subunit protein S21 {Zea mays}  
At3g27460	chr3:010161874	0.0	C/10161874-10161994,10161093-10161186,10160880-10160956,10160564-10160670,10160398-10160483,10160095-10160148,10159861-10160014,10159738-10159751,10159537-10159639	AT3G27460.2  CDS  go_component nucleus|GO:0005634|14505352|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1325 (InterPro:IPR010750); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40550.1).  protein_id AT3G27460.2p  transcript_id AT3G27460.2  protein_id AT3G27460.2p  transcript_id AT3G27460.2  
At3g27460	chr3:010161874	0.0	C/10161874-10161994,10161093-10161186,10160880-10160956,10160564-10160673,10160398-10160483,10160095-10160148,10159861-10160014,10159738-10159751,10159537-10159639	AT3G27460.1  CDS  go_component nucleus|GO:0005634|14505352|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1325 (InterPro:IPR010750); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40550.1); Has 219 Blast hits to 219 proteins in 103 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 71; Plants - 24; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT3G27460.1p  transcript_id AT3G27460.1  protein_id AT3G27460.1p  transcript_id AT3G27460.1  
At3g27470	chr3:010163947	0.0	W/10163947-10164051,10164170-10164334,10164420-10164524,10164604-10164687,10164763-10164878,10164980-10165081,10165152-10165265,10165356-10165412,10165525-10165591,10165664-10165717,10165824-10165898,10166293-10166328,10166434-10166550	AT3G27470.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67850.2); Has 190 Blast hits to 189 proteins in 14 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 179; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G27470.1p  transcript_id AT3G27470.1  protein_id AT3G27470.1p  transcript_id AT3G27470.1  
At3g27470	chr3:010163947	0.0	W/10163947-10164051,10164170-10164334,10164420-10164524,10164604-10164687,10164763-10164878,10164980-10165081,10165152-10165265,10165356-10165412,10165525-10165591,10165664-10165717,10165824-10165898,10166293-10166328,10166434-10166550	AT3G27470.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67850.2); Has 190 Blast hits to 189 proteins in 14 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 179; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G27470.2p  transcript_id AT3G27470.2  protein_id AT3G27470.2p  transcript_id AT3G27470.2  
At3g27473	chr3:010169242	0.0	C/10169242-10171230	AT3G27473.1  CDS  go_process intracellular signaling cascade|GO:0007242||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular signaling cascade; EXPRESSED IN: stem, sperm cell, root; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT5G42840.1); Has 1421 Blast hits to 571 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 81; Fungi - 0; Plants - 1321; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT3G27473.1p  transcript_id AT3G27473.1  protein_id AT3G27473.1p  transcript_id AT3G27473.1  
At3g27480	chr3:010173775	0.0	C/10173775-10175555,10173640-10173673	AT3G27480.1  CDS  go_process intracellular signaling cascade|GO:0007242||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular signaling cascade; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT3G27490.1); Has 1413 Blast hits to 597 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 0; Plants - 1269; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT3G27480.1p  transcript_id AT3G27480.1  protein_id AT3G27480.1p  transcript_id AT3G27480.1  
At3g27490	chr3:010178100	0.0	C/10178100-10180148	AT3G27490.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT3G27480.1); Has 1232 Blast hits to 475 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 1215; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT3G27490.1p  transcript_id AT3G27490.1  protein_id AT3G27490.1p  transcript_id AT3G27490.1  
At3g27500	chr3:010183003	0.0	C/10183003-10185081	AT3G27500.1  CDS  go_process intracellular signaling cascade|GO:0007242||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular signaling cascade; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT3G27473.1); Has 1403 Blast hits to 551 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 4; Plants - 1331; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT3G27500.1p  transcript_id AT3G27500.1  protein_id AT3G27500.1p  transcript_id AT3G27500.1  
At3g27503	chr3:010186433	0.0	C/10186433-10186499,10185960-10186189	AT3G27503.1  CDS  gene_syn SCR-Like 19, SCRL19  gene SCRL19  function Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).  go_component endomembrane system|GO:0012505||IEA  product SCRL19 (SCR-Like 19)  note SCR-Like 19 (SCRL19); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: SCRL18 (SCR-Like 18) (TAIR:AT2G14282.1); Has 9 Blast hits to 9 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G27503.1p  transcript_id AT3G27503.1  protein_id AT3G27503.1p  transcript_id AT3G27503.1  
At3g27510	chr3:010188240	0.0	C/10188240-10189562	AT3G27510.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT3G27500.1); Has 847 Blast hits to 431 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 847; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G27510.1p  transcript_id AT3G27510.1  protein_id AT3G27510.1p  transcript_id AT3G27510.1  
At3g27520	chr3:010192484	0.0	W/10192484-10192921,10193001-10193159	AT3G27520.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; Has 14 Blast hits to 14 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G27520.1p  transcript_id AT3G27520.1  protein_id AT3G27520.1p  transcript_id AT3G27520.1  
At3g27530	chr3:010199636	0.0	C/10199636-10199659,10199262-10199311,10199017-10199144,10198880-10198932,10198224-10198370,10198047-10198120,10197897-10197966,10197677-10197730,10197492-10197587,10197224-10197274,10197056-10197142,10196845-10196958,10196685-10196756,10196166-10196351,10195946-10196049,10195745-10195793,10195599-10195664,10194744-10195511,10193778-10194329	AT3G27530.1  CDS  gene_syn GC6, golgin candidate 6  gene GC6  function This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC6 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (225 aa) portion of the protein.  go_process intracellular protein transport|GO:0006886||IEA  go_function binding|GO:0005488||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component Golgi apparatus|GO:0005794|18182439|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process Golgi vesicle transport|GO:0048193||ISS  product GC6 (golgin candidate 6); binding / protein transporter  note golgin candidate 6 (GC6); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, Golgi vesicle transport; LOCATED IN: cytosol, Golgi apparatus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uso1/p115 like vesicle tethering protein, C-terminal (InterPro:IPR006955), Armadillo-type fold (InterPro:IPR016024); Has 7148 Blast hits to 5322 proteins in 525 species: Archae - 96; Bacteria - 687; Metazoa - 3604; Fungi - 544; Plants - 234; Viruses - 34; Other Eukaryotes - 1949 (source: NCBI BLink).  protein_id AT3G27530.1p  transcript_id AT3G27530.1  protein_id AT3G27530.1p  transcript_id AT3G27530.1  
At3g27540	chr3:010205489	0.0	W/10205489-10205551,10205779-10206888	AT3G27540.1  CDS  go_component membrane|GO:0016020||IEA  go_process protein amino acid N-linked glycosylation|GO:0006487||IEA  go_function acetylglucosaminyltransferase activity|GO:0008375||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyl transferase family 17 protein  note glycosyl transferase family 17 protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: protein amino acid N-linked glycosylation; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 17 (InterPro:IPR006813); BEST Arabidopsis thaliana protein match is: glycosyl transferase family 17 protein (TAIR:AT5G14480.1); Has 1095 Blast hits to 1095 proteins in 57 species: Archae - 0; Bacteria - 24; Metazoa - 46; Fungi - 23; Plants - 67; Viruses - 4; Other Eukaryotes - 931 (source: NCBI BLink).  protein_id AT3G27540.1p  transcript_id AT3G27540.1  protein_id AT3G27540.1p  transcript_id AT3G27540.1  
At3g27550	chr3:010209714	0.0	C/10209714-10209899,10209114-10209515,10208010-10208897	AT3G27550.1  CDS  go_function RNA binding|GO:0003723||IEA  product group II intron splicing factor CRS1-related  note group II intron splicing factor CRS1-related; FUNCTIONS IN: RNA binding; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: group II intron splicing factor CRS1-related (TAIR:AT4G13070.1); Has 9126 Blast hits to 4840 proteins in 369 species: Archae - 10; Bacteria - 3168; Metazoa - 2761; Fungi - 870; Plants - 511; Viruses - 93; Other Eukaryotes - 1713 (source: NCBI BLink).  protein_id AT3G27550.1p  transcript_id AT3G27550.1  protein_id AT3G27550.1p  transcript_id AT3G27550.1  
At3g27555	chr3:010210328	0.0	W/10210328-10210399	AT3G27555.1  tRNA  gene_syn 60484.TRNA-ASP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asp (anticodon: GTC)  transcript_id AT3G27555.1  
At3g27560	chr3:010212377	0.0	C/10212377-10212507,10211922-10212054,10211635-10211830,10211437-10211561,10211195-10211353,10210597-10210923	AT3G27560.1  CDS  gene_syn ATN1  gene ATN1  function encodes a protein with kinase domains, including catalytic domains for serine/threonine as well as tyrosine kinases. a member of multi-gene family and is expressed in all tissues examined.  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function protein tyrosine kinase activity|GO:0004713||ISS  go_function kinase activity|GO:0016301||ISS  product ATN1; kinase/ protein serine/threonine kinase/ protein serine/threonine/tyrosine kinase/ protein tyrosine kinase  note ATN1; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, protein serine/threonine kinase activity, protein tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Tyrosine-protein kinase, ATN1-like (InterPro:IPR015784); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT5G40540.1); Has 92336 Blast hits to 91219 proteins in 3392 species: Archae - 70; Bacteria - 7807; Metazoa - 41000; Fungi - 7885; Plants - 18621; Viruses - 460; Other Eukaryotes - 16493 (source: NCBI BLink).  protein_id AT3G27560.1p  transcript_id AT3G27560.1  protein_id AT3G27560.1p  transcript_id AT3G27560.1  
At3g27570	chr3:010216325	0.0	C/10216325-10216681,10216158-10216234,10215235-10215540,10215061-10215144,10214276-10214591	AT3G27570.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Sucraseferredoxin-like (InterPro:IPR009737), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40510.1); Has 291 Blast hits to 291 proteins in 98 species: Archae - 6; Bacteria - 47; Metazoa - 0; Fungi - 168; Plants - 40; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT3G27570.1p  transcript_id AT3G27570.1  protein_id AT3G27570.1p  transcript_id AT3G27570.1  
At3g27580	chr3:010218631	0.0	C/10218631-10219484,10217671-10218553	AT3G27580.1  CDS  gene_syn ATPK7, D6 PROTEIN KINASE LIKE 3, D6PKL3  gene ATPK7  function a member of a subfamily of Ser/Thr PKs in plants.  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein serine/threonine kinase activity|GO:0004674|1446831|ISS  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product ATPK7; kinase/ protein serine/threonine kinase  note ATPK7; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: D6PKL2 (D6 PROTEIN KINASE LIKE 2); kinase (TAIR:AT5G47750.1); Has 87171 Blast hits to 67301 proteins in 1792 species: Archae - 25; Bacteria - 7327; Metazoa - 39584; Fungi - 8839; Plants - 12876; Viruses - 352; Other Eukaryotes - 18168 (source: NCBI BLink).  protein_id AT3G27580.1p  transcript_id AT3G27580.1  protein_id AT3G27580.1p  transcript_id AT3G27580.1  
At3g27580	chr3:010218631	0.0	C/10218631-10219484,10217671-10218553	AT3G27580.2  CDS  gene_syn ATPK7, D6 PROTEIN KINASE LIKE 3, D6PKL3  gene ATPK7  function a member of a subfamily of Ser/Thr PKs in plants.  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein serine/threonine kinase activity|GO:0004674|1446831|ISS  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product ATPK7; kinase/ protein serine/threonine kinase  note ATPK7; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: D6PKL2 (D6 PROTEIN KINASE LIKE 2); kinase (TAIR:AT5G47750.1); Has 87171 Blast hits to 67301 proteins in 1792 species: Archae - 25; Bacteria - 7327; Metazoa - 39584; Fungi - 8839; Plants - 12876; Viruses - 352; Other Eukaryotes - 18168 (source: NCBI BLink).  protein_id AT3G27580.2p  transcript_id AT3G27580.2  protein_id AT3G27580.2p  transcript_id AT3G27580.2  
At3g27590	chr3:010221147	0.0	W/10221147-10221260,10221551-10221715	AT3G27590.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G05095.1); Has 18 Blast hits to 18 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G27590.1p  transcript_id AT3G27590.1  protein_id AT3G27590.1p  transcript_id AT3G27590.1  
At3g27600	chr3:010224573	0.0	C/10224573-10224948,10224428-10224549,10224236-10224364,10223743-10224057	AT3G27600.1  CDS  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  product RNA binding  note RNA binding; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061); BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (TAIR:AT1G14650.2); Has 65 Blast hits to 64 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 41; Fungi - 3; Plants - 20; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G27600.1p  transcript_id AT3G27600.1  protein_id AT3G27600.1p  transcript_id AT3G27600.1  
At3g27610	chr3:010228063	0.0	C/10228063-10228152,10227888-10227986,10227724-10227808,10227481-10227550,10227329-10227389,10227207-10227260,10226929-10227085,10226730-10226826,10226418-10226530,10226192-10226298,10225961-10226071,10225729-10225854	AT3G27610.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleotidyltransferase (TAIR:AT2G01220.2); Has 367 Blast hits to 361 proteins in 33 species: Archae - 6; Bacteria - 21; Metazoa - 0; Fungi - 3; Plants - 35; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink).  protein_id AT3G27610.1p  transcript_id AT3G27610.1  protein_id AT3G27610.1p  transcript_id AT3G27610.1  
At3g27620	chr3:010230284	0.0	C/10230284-10230595,10230060-10230188,10229433-10229921,10229289-10229348	AT3G27620.1  CDS  gene_syn AOX1C  gene AOX1C  function encodes an isoform of alternate oxidase. expressed in all tissues examined and expression is not induced by antimycin A, an inhibitor of complex III in the mitochondrial respiratory chain.  go_component mitochondrion|GO:0005739|14671022|IDA  go_process oxidation reduction|GO:0055114|9349280|TAS  go_function alternative oxidase activity|GO:0009916|9349280|ISS  go_function alternative oxidase activity|GO:0009916||ISS  product AOX1C; alternative oxidase  note AOX1C; FUNCTIONS IN: alternative oxidase activity; INVOLVED IN: oxidation reduction; LOCATED IN: mitochondrion; EXPRESSED IN: shoot, stem, root; CONTAINS InterPro DOMAIN/s: Alternative oxidase (InterPro:IPR002680); BEST Arabidopsis thaliana protein match is: AOX1B; alternative oxidase (TAIR:AT3G22360.1); Has 1069 Blast hits to 1063 proteins in 175 species: Archae - 0; Bacteria - 81; Metazoa - 6; Fungi - 138; Plants - 262; Viruses - 0; Other Eukaryotes - 582 (source: NCBI BLink).  protein_id AT3G27620.1p  transcript_id AT3G27620.1  protein_id AT3G27620.1p  transcript_id AT3G27620.1  
At3g27630	chr3:010231119	0.0	C/10231119-10231418	AT3G27630.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40460.1); Has 16 Blast hits to 16 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G27630.1p  transcript_id AT3G27630.1  protein_id AT3G27630.1p  transcript_id AT3G27630.1  
At3g27640	chr3:010232307	0.0	W/10232307-10232353,10232439-10232515,10232609-10232721,10232886-10232997,10233079-10233143,10233239-10233277,10233364-10233460,10233542-10233632,10233721-10233784,10233865-10233941,10234053-10234134,10234256-10234335,10234438-10234522,10234621-10234689,10234782-10234849,10234948-10234996,10235075-10235467	AT3G27640.1  CDS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT2G43770.1); Has 27275 Blast hits to 16307 proteins in 486 species: Archae - 38; Bacteria - 3510; Metazoa - 12231; Fungi - 5401; Plants - 2530; Viruses - 0; Other Eukaryotes - 3565 (source: NCBI BLink).  protein_id AT3G27640.1p  transcript_id AT3G27640.1  protein_id AT3G27640.1p  transcript_id AT3G27640.1  
At3g27650	chr3:010238731	0.0	W/10238731-10238814,10239951-10240346	AT3G27650.1  CDS  gene_syn LBD25, LOB DOMAIN-CONTAINING PROTEIN 25  gene LBD25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product LBD25 (LOB DOMAIN-CONTAINING PROTEIN 25)  note LOB DOMAIN-CONTAINING PROTEIN 25 (LBD25); INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB (LATERAL ORGAN BOUNDARIES) (TAIR:AT5G63090.4); Has 554 Blast hits to 551 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 554; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G27650.1p  transcript_id AT3G27650.1  protein_id AT3G27650.1p  transcript_id AT3G27650.1  
At3g27660	chr3:010243851	0.0	W/10243851-10244003,10244399-10244821	AT3G27660.1  CDS  gene_syn OLE3, OLEO4, OLEOSIN 3, OLEOSIN 4  gene OLEO4  function Encodes oleosin4 (Plant Cell, 2006, 18:1961), a protein found in oil bodies, involved in seed lipid accumulation. Functions in freezing tolerance of seeds. Note: also referred to as OLE3 in Plant Journal 2008, 55:798.  go_component monolayer-surrounded lipid storage body|GO:0012511||IEA  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  go_process seed germination|GO:0009845|18485063|IGI  go_process seed oilbody biogenesis|GO:0010344|18485063|IGI  go_process lipid storage|GO:0019915||ISS  go_process response to freezing|GO:0050826|18485063|IMP  go_function molecular_function|GO:0003674||ND  product OLEO4 (OLEOSIN 4)  note OLEOSIN 4 (OLEO4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to freezing, lipid storage, seed germination, seed oilbody biogenesis; LOCATED IN: monolayer-surrounded lipid storage body, integral to membrane, membrane; EXPRESSED IN: hypocotyl, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136); BEST Arabidopsis thaliana protein match is: OLEO2 (OLEOSIN 2) (TAIR:AT5G40420.1); Has 388 Blast hits to 388 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 388; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G27660.1p  transcript_id AT3G27660.1  protein_id AT3G27660.1p  transcript_id AT3G27660.1  
At3g27670	chr3:010245338	0.0	W/10245338-10245730,10245828-10246178,10246259-10246535,10246631-10247238,10247346-10247446,10247674-10247749,10247827-10247958,10248055-10248136,10248222-10248294,10248432-10248600,10248709-10248839,10248927-10249018,10249374-10249462,10249536-10249751,10249845-10249922,10250002-10250184,10250329-10251225,10251324-10252271,10252363-10252513,10252597-10252715,10252799-10253158	AT3G27670.1  CDS  gene_syn RESURRECTION1, RST1  gene RST1  function A novel protein, did not show high similarity to any protein of known function; reveals a novel genetic connection between lipid synthesis and embryo development. Expressed in all tissues examined including leaves, flowers, roots, stems, and siliques, but accumulation levels were not correlated with the degree to which different organs appeared affected by the mutation. Mutant plants showed alterations in the cuticular wax profiles and embryo development.  go_function binding|GO:0005488||IEA  go_process cuticle hydrocarbon biosynthetic process|GO:0006723|16183838|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|16183838|IMP  product RST1 (RESURRECTION1); binding  note RESURRECTION1 (RST1); FUNCTIONS IN: binding; INVOLVED IN: embryonic development ending in seed dormancy, cuticle hydrocarbon biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 59 Blast hits to 56 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G27670.1p  transcript_id AT3G27670.1  protein_id AT3G27670.1p  transcript_id AT3G27670.1  
At3g27680	chr3:010254886	0.0	C/10254886-10255290	AT3G27680.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product self-incompatibility protein-related  note self-incompatibility protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27329.1); Has 48 Blast hits to 48 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G27680.1p  transcript_id AT3G27680.1  protein_id AT3G27680.1p  transcript_id AT3G27680.1  
At3g27690	chr3:010256002	0.0	W/10256002-10256150,10256270-10256921	AT3G27690.1  CDS  gene_syn LHCB2, LHCB2.3, LHCB2.4, LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2  gene LHCB2.3  function Encodes Lhcb2.4. Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus.  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component light-harvesting complex|GO:0030076||ISS  go_process response to blue light|GO:0009637|18820083|IEP  go_process response to red light|GO:0010114|18820083|IEP  go_process response to far red light|GO:0010218|18820083|IEP  go_process photosynthesis|GO:0015979||ISS  go_function chlorophyll binding|GO:0016168||ISS  product LHCB2.3; chlorophyll binding  note LHCB2.3; FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light, photosynthesis; LOCATED IN: light-harvesting complex, thylakoid, chloroplast thylakoid membrane, chloroplast envelope; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: LHCB2.1; chlorophyll binding (TAIR:AT2G05100.1); Has 1764 Blast hits to 1702 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1535; Viruses - 0; Other Eukaryotes - 227 (source: NCBI BLink).  protein_id AT3G27690.1p  transcript_id AT3G27690.1  protein_id AT3G27690.1p  transcript_id AT3G27690.1  
At3g27700	chr3:010260623	0.0	C/10260623-10261330,10259035-10260204,10258359-10258673,10257681-10258214	AT3G27700.1  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); Has 3937 Blast hits to 2269 proteins in 214 species: Archae - 4; Bacteria - 261; Metazoa - 1077; Fungi - 214; Plants - 103; Viruses - 7; Other Eukaryotes - 2271 (source: NCBI BLink).  protein_id AT3G27700.1p  transcript_id AT3G27700.1  protein_id AT3G27700.1p  transcript_id AT3G27700.1  
At3g27700	chr3:010260623	0.0	C/10260623-10261330,10259035-10260204,10258359-10258673,10257681-10258214	AT3G27700.2  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); Has 3937 Blast hits to 2269 proteins in 214 species: Archae - 4; Bacteria - 261; Metazoa - 1077; Fungi - 214; Plants - 103; Viruses - 7; Other Eukaryotes - 2271 (source: NCBI BLink).  protein_id AT3G27700.2p  transcript_id AT3G27700.2  protein_id AT3G27700.2p  transcript_id AT3G27700.2  
At3g27710	chr3:010269304	0.0	W/10269304-10270917	AT3G27710.1  CDS  gene_syn ARI13, ARIADNE 13, ATARI13  gene ARI13  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger protein-related  note zinc finger protein-related; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: ARI1 (ARIADNE); protein binding / zinc ion binding (TAIR:AT4G34370.1); Has 2398 Blast hits to 2378 proteins in 166 species: Archae - 0; Bacteria - 2; Metazoa - 1163; Fungi - 403; Plants - 378; Viruses - 14; Other Eukaryotes - 438 (source: NCBI BLink).  protein_id AT3G27710.1p  transcript_id AT3G27710.1  protein_id AT3G27710.1p  transcript_id AT3G27710.1  
At3g27720	chr3:010271876	0.0	W/10271876-10272007,10272060-10272186,10272225-10272387,10272562-10273621	AT3G27720.1  CDS  gene_syn ARI14, ARIADNE 14, ATARI14  gene ARI14  go_function zinc ion binding|GO:0008270||IEA  product zinc finger protein-related  note zinc finger protein-related; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867); BEST Arabidopsis thaliana protein match is: zinc finger protein-related (TAIR:AT3G27710.1); Has 33871 Blast hits to 14759 proteins in 598 species: Archae - 61; Bacteria - 766; Metazoa - 16718; Fungi - 3717; Plants - 1782; Viruses - 843; Other Eukaryotes - 9984 (source: NCBI BLink).  protein_id AT3G27720.1p  transcript_id AT3G27720.1  protein_id AT3G27720.1p  transcript_id AT3G27720.1  
At3g27730	chr3:010280146	0.0	C/10280146-10280213,10279758-10279941,10279478-10279639,10279060-10279297,10278883-10278919,10278746-10278792,10278583-10278620,10278432-10278453,10278122-10278334,10277873-10278029,10277733-10277784,10277544-10277615,10277400-10277449,10277173-10277290,10277022-10277085,10276868-10276951,10276676-10276801,10276400-10276596,10276124-10276312,10275769-10276020,10275571-10275620,10275427-10275444,10275230-10275315,10274928-10275105,10274807-10274844,10274401-10274706,10273952-10274307	AT3G27730.1  CDS  gene_syn MER3, RCK, ROCK-N-ROLLERS  gene RCK  function DNA helicase required for interference-sensitive meiotic crossover events.  go_process reciprocal meiotic recombination|GO:0007131|15854901|IMP  go_process chiasma formation|GO:0051026|15854901|IMP  go_function DNA helicase activity|GO:0003678|15854901|ISS  go_function ATP binding|GO:0005524||ISS  go_function ATP-dependent helicase activity|GO:0008026||ISS  product RCK (ROCK-N-ROLLERS); ATP binding / ATP-dependent helicase/ DNA helicase  note ROCK-N-ROLLERS (RCK); FUNCTIONS IN: DNA helicase activity, ATP-dependent helicase activity, ATP binding; INVOLVED IN: reciprocal meiotic recombination, chiasma formation; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Sec63 domain (InterPro:IPR004179), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase, putative (TAIR:AT5G61140.1); Has 6679 Blast hits to 5790 proteins in 847 species: Archae - 508; Bacteria - 1974; Metazoa - 1171; Fungi - 930; Plants - 259; Viruses - 23; Other Eukaryotes - 1814 (source: NCBI BLink).  protein_id AT3G27730.1p  transcript_id AT3G27730.1  protein_id AT3G27730.1p  transcript_id AT3G27730.1  
At3g27740	chr3:010283654	0.0	C/10283654-10283792,10283345-10283477,10283168-10283256,10282639-10282680,10282427-10282536,10281976-10282323,10281625-10281790,10281470-10281519	AT3G27740.2  CDS  gene_syn CARA, CARBAMOYL PHOSPHATE SYNTHETASE A, CARBAMOYL PHOSPHATE SYNTHETASE SMALL SUBUNIT  gene CARA  function carbamoyl phosphate synthetase small subunit mRNA (carA),  go_component chloroplast|GO:0009507|18431481|IDA  go_process glutamine metabolic process|GO:0006541||IEA  go_process nitrogen compound metabolic process|GO:0006807||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function catalytic activity|GO:0003824||IEA  go_function carbamoyl-phosphate synthase activity|GO:0004086||IEA  go_function carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|GO:0004088||ISS  product CARA (CARBAMOYL PHOSPHATE SYNTHETASE A); carbamoyl-phosphate synthase (glutamine-hydrolyzing)/ carbamoyl-phosphate synthase/ catalytic  note CARBAMOYL PHOSPHATE SYNTHETASE A (CARA); FUNCTIONS IN: carbamoyl-phosphate synthase activity, carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity, catalytic activity; INVOLVED IN: nitrogen compound metabolic process, glutamine metabolic process, biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), Carbamoyl phosphate synthase, GATase region (InterPro:IPR001317), Carbamoyl phosphate synthase, small subunit, N-terminal (InterPro:IPR002474), Glutamine amidotransferase type 1 (InterPro:IPR017926), Carbamoyl phosphate synthase, small subunit (InterPro:IPR006274), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); BEST Arabidopsis thaliana protein match is: ASB1 (ANTHRANILATE SYNTHASE BETA SUBUNIT 1); anthranilate synthase (TAIR:AT1G25220.1); Has 18633 Blast hits to 15520 proteins in 2257 species: Archae - 383; Bacteria - 9084; Metazoa - 940; Fungi - 506; Plants - 125; Viruses - 0; Other Eukaryotes - 7595 (source: NCBI BLink).  protein_id AT3G27740.2p  transcript_id AT3G27740.2  protein_id AT3G27740.2p  transcript_id AT3G27740.2  
At3g27740	chr3:010283654	0.0	C/10283654-10283792,10283345-10283477,10283168-10283256,10283022-10283082,10282876-10282943,10282639-10282767,10282427-10282536,10281976-10282323,10281625-10281790,10281470-10281519	AT3G27740.1  CDS  gene_syn CARA, CARBAMOYL PHOSPHATE SYNTHETASE A, CARBAMOYL PHOSPHATE SYNTHETASE SMALL SUBUNIT  gene CARA  function carbamoyl phosphate synthetase small subunit mRNA (carA),  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process  de novo  pyrimidine base biosynthetic process|GO:0006207||IEA  go_process arginine biosynthetic process|GO:0006526||IEA  go_process glutamine metabolic process|GO:0006541||IEA  go_process nitrogen compound metabolic process|GO:0006807||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function catalytic activity|GO:0003824||IEA  go_function carbamoyl-phosphate synthase activity|GO:0004086||IEA  go_function carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|GO:0004088||ISS  product CARA (CARBAMOYL PHOSPHATE SYNTHETASE A); carbamoyl-phosphate synthase (glutamine-hydrolyzing)/ carbamoyl-phosphate synthase/ catalytic  note CARBAMOYL PHOSPHATE SYNTHETASE A (CARA); FUNCTIONS IN: carbamoyl-phosphate synthase activity, carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity, catalytic activity; INVOLVED IN: glutamine metabolic process, nitrogen compound metabolic process, arginine biosynthetic process,  de novo  pyrimidine base biosynthetic process, biosynthetic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), Carbamoyl phosphate synthase, GATase region (InterPro:IPR001317), Carbamoyl phosphate synthase, small subunit, N-terminal (InterPro:IPR002474), Glutamine amidotransferase type 1 (InterPro:IPR017926), Carbamoyl phosphate synthase, small subunit (InterPro:IPR006274), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); BEST Arabidopsis thaliana protein match is: ASB1 (ANTHRANILATE SYNTHASE BETA SUBUNIT 1); anthranilate synthase (TAIR:AT1G25220.1); Has 15561 Blast hits to 15544 proteins in 2264 species: Archae - 329; Bacteria - 7194; Metazoa - 876; Fungi - 339; Plants - 101; Viruses - 0; Other Eukaryotes - 6722 (source: NCBI BLink).  protein_id AT3G27740.1p  transcript_id AT3G27740.1  protein_id AT3G27740.1p  transcript_id AT3G27740.1  
At3g27750	chr3:010284820	0.0	W/10284820-10285488	AT3G27750.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: VPS9B (TAIR:AT5G09320.1); Has 54 Blast hits to 54 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G27750.1p  transcript_id AT3G27750.1  protein_id AT3G27750.1p  transcript_id AT3G27750.1  
At3g27770	chr3:010287152	0.0	C/10287152-10287474,10287026-10287059,10286729-10286938,10286525-10286614,10286331-10286396,10286149-10286240,10286019-10286066,10285818-10285902	AT3G27770.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62960.1); Has 94 Blast hits to 93 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G27770.1p  transcript_id AT3G27770.1  protein_id AT3G27770.1p  transcript_id AT3G27770.1  
At3g27770	chr3:010287397	0.0	C/10287397-10287461,10287152-10287280,10287026-10287059,10286729-10286938,10286525-10286614,10286331-10286396,10286149-10286240,10286019-10286066,10285818-10285902	AT3G27770.2  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62960.1); Has 90 Blast hits to 90 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G27770.2p  transcript_id AT3G27770.2  protein_id AT3G27770.2p  transcript_id AT3G27770.2  
At3g27785	chr3:010290569	0.0	C/10290569-10290712,10290012-10290460,10289779-10289905,10288767-10289360	AT3G27785.1  CDS  gene_syn AT3G27780, ATMYB118, MYB118  gene MYB118  function putative transcription factor (MYB118)  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634|19066902|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  go_function transcription activator activity|GO:0016563|19066902|IDA  product MYB118; DNA binding / transcription activator/ transcription factor  note MYB118; FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: embryo, rosette leaf, cauline leaf, fruit, flower; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB115 (myb domain protein 115); DNA binding / transcription factor (TAIR:AT5G40360.1); Has 7002 Blast hits to 5950 proteins in 373 species: Archae - 0; Bacteria - 0; Metazoa - 943; Fungi - 483; Plants - 3617; Viruses - 7; Other Eukaryotes - 1952 (source: NCBI BLink).  protein_id AT3G27785.1p  transcript_id AT3G27785.1  protein_id AT3G27785.1p  transcript_id AT3G27785.1  
At3g27800	chr3:010302153	0.0	C/10302153-10302201,10301928-10302055	AT3G27800.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: zinc knuckle (CCHC-type) family protein (TAIR:AT4G05360.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G27800.1p  transcript_id AT3G27800.1  protein_id AT3G27800.1p  transcript_id AT3G27800.1  
At3g27810	chr3:010307596	0.0	W/10307596-10307752,10308271-10308400,10309700-10310093	AT3G27810.1  CDS  gene_syn ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 21, AT3G27812, ATMYB21, ATMYB3, MYB DOMAIN PROTEIN 21, MYB21  gene ATMYB21  function Encodes a member of the R2R3-MYB transcription factor gene family. Induced by jasmonate. Involved in jasmonate response during stamen development.  go_function DNA binding|GO:0003677||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to jasmonic acid stimulus|GO:0009753|16805732|IEP  go_process stamen development|GO:0048443|16805732|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product ATMYB21 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 21); DNA binding / transcription factor  note ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 21 (ATMYB21); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: stamen development, response to jasmonic acid stimulus, regulation of transcription, DNA-dependent; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB24 (myb domain protein 24); DNA binding / transcription factor (TAIR:AT5G40350.1); Has 6255 Blast hits to 5729 proteins in 345 species: Archae - 0; Bacteria - 0; Metazoa - 675; Fungi - 287; Plants - 3732; Viruses - 6; Other Eukaryotes - 1555 (source: NCBI BLink).  protein_id AT3G27810.1p  transcript_id AT3G27810.1  protein_id AT3G27810.1p  transcript_id AT3G27810.1  
At3g27809	chr3:010308284	0.0	C/10308284-10308383,10307700-10307746	AT3G27809.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G27809.1p  transcript_id AT3G27809.1  protein_id AT3G27809.1p  transcript_id AT3G27809.1  
At3g27820	chr3:010315249	0.0	W/10315249-10315368,10315730-10315781,10315908-10315988,10316079-10316197,10316509-10316728,10316814-10316932,10317126-10317881	AT3G27820.1  CDS  gene_syn ATMDAR4, MDAR4, MONODEHYDROASCORBATE REDUCTASE 4  gene MDAR4  function Encodes a peroxisome membrane-bound monodehydroascorbate reductase, involved in the ascorbate-glutathione cycle which removes toxic H2O2  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component peroxisomal membrane|GO:0005778|16146528|IDA  go_process hydrogen peroxide catabolic process|GO:0042744|16146528|TAS  go_process hydrogen peroxide catabolic process|GO:0042744|17449810|IMP  go_function monodehydroascorbate reductase (NADH) activity|GO:0016656|16146528|IDA  go_function monodehydroascorbate reductase (NADH) activity|GO:0016656|17449810|IMP  product MDAR4 (MONODEHYDROASCORBATE REDUCTASE 4); monodehydroascorbate reductase (NADH)  note MONODEHYDROASCORBATE REDUCTASE 4 (MDAR4); FUNCTIONS IN: monodehydroascorbate reductase (NADH) activity; INVOLVED IN: hydrogen peroxide catabolic process; LOCATED IN: peroxisomal membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: monodehydroascorbate reductase, putative (TAIR:AT3G52880.2); Has 15621 Blast hits to 15601 proteins in 1690 species: Archae - 329; Bacteria - 11258; Metazoa - 643; Fungi - 356; Plants - 304; Viruses - 0; Other Eukaryotes - 2731 (source: NCBI BLink).  protein_id AT3G27820.1p  transcript_id AT3G27820.1  protein_id AT3G27820.1p  transcript_id AT3G27820.1  
At3g27825	chr3:010318262	0.0	W/10318262-10318333	AT3G27825.1  tRNA  gene_syn 60532.TRNA-PRO-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT3G27825.1  
At3g27830	chr3:010318576	0.0	W/10318576-10319151	AT3G27830.1  CDS  gene_syn RIBOSOMAL PROTEIN L12, RIBOSOMAL PROTEIN L12-A, RPL12, RPL12-A  gene RPL12-A  function 50S ribosomal protein L12-A  go_component nucleoid|GO:0009295|16326926|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component plastid large ribosomal subunit|GO:0000311|8125949|ISS  go_component large ribosomal subunit|GO:0015934||ISS  go_process translation|GO:0006412|8125949|TAS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product RPL12-A (RIBOSOMAL PROTEIN L12-A); structural constituent of ribosome  note RIBOSOMAL PROTEIN L12-A (RPL12-A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: cotyledon, juvenile leaf, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L7/L12 (InterPro:IPR000206), Ribosomal protein L12, chloroplast (InterPro:IPR015608), Ribosomal protein L7/L12, oligomerisation (InterPro:IPR008932), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719), Ribosomal protein L7/L12, C-terminal (InterPro:IPR013823); BEST Arabidopsis thaliana protein match is: RPL12-C (ribosomal protein l12-c); structural constituent of ribosome (TAIR:AT3G27850.1); Has 5862 Blast hits to 5862 proteins in 1566 species: Archae - 0; Bacteria - 3215; Metazoa - 132; Fungi - 80; Plants - 175; Viruses - 0; Other Eukaryotes - 2260 (source: NCBI BLink).  protein_id AT3G27830.1p  transcript_id AT3G27830.1  protein_id AT3G27830.1p  transcript_id AT3G27830.1  
At3g27831	chr3:010320029	0.0	C/10320029-10320092,10319481-10319650	AT3G27831.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||IEA  product unknown protein  note INVOLVED IN: defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27835.1); Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G27831.1p  transcript_id AT3G27831.1  protein_id AT3G27831.1p  transcript_id AT3G27831.1  
At3g27835	chr3:010322243	0.0	C/10322243-10322306,10321741-10321916	AT3G27835.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||IEA  product unknown protein  note INVOLVED IN: defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27831.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G27835.1p  transcript_id AT3G27835.1  protein_id AT3G27835.1p  transcript_id AT3G27835.1  
At3g27840	chr3:010323354	0.0	W/10323354-10323935	AT3G27840.1  CDS  gene_syn RPL12-B, ribosomal protein l12-b  gene RPL12-B  function 50S ribosomal protein L12-B  go_function structural constituent of ribosome|GO:0003735||IEA  go_component plastid large ribosomal subunit|GO:0000311|8125949|ISS  go_component large ribosomal subunit|GO:0015934||ISS  go_process translation|GO:0006412|8125949|TAS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product RPL12-B (ribosomal protein l12-b); structural constituent of ribosome  note ribosomal protein l12-b (RPL12-B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: plastid large ribosomal subunit, large ribosomal subunit; EXPRESSED IN: petiole; CONTAINS InterPro DOMAIN/s: Ribosomal protein L12, chloroplast (InterPro:IPR015608), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719), Ribosomal protein L7/L12, oligomerisation (InterPro:IPR008932), Ribosomal protein L7/L12, C-terminal (InterPro:IPR013823); BEST Arabidopsis thaliana protein match is: RPL12-A (RIBOSOMAL PROTEIN L12-A); structural constituent of ribosome (TAIR:AT3G27830.1); Has 5668 Blast hits to 5668 proteins in 1543 species: Archae - 0; Bacteria - 3187; Metazoa - 88; Fungi - 80; Plants - 172; Viruses - 0; Other Eukaryotes - 2141 (source: NCBI BLink).  protein_id AT3G27840.1p  transcript_id AT3G27840.1  protein_id AT3G27840.1p  transcript_id AT3G27840.1  
At3g27845	chr3:010324639	0.0	W/10324639-10324710	AT3G27845.1  tRNA  gene_syn 60532.TRNA-PRO-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT3G27845.1  
At3g27850	chr3:010324905	0.0	W/10324905-10325468	AT3G27850.1  CDS  gene_syn RPL12, RPL12-C, ribosomal protein l12-c  gene RPL12-C  function 50S ribosomal protein L12-C  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_function structural constituent of ribosome|GO:0003735||IEA  go_component plastid large ribosomal subunit|GO:0000311|8125949|ISS  go_component large ribosomal subunit|GO:0015934||ISS  go_process translation|GO:0006412|8125949|TAS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product RPL12-C (ribosomal protein l12-c); structural constituent of ribosome  note ribosomal protein l12-c (RPL12-C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: defense response to bacterium, translation; LOCATED IN: in 6 components; EXPRESSED IN: juvenile leaf, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L7/L12 (InterPro:IPR000206), Ribosomal protein L12, chloroplast (InterPro:IPR015608), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719), Ribosomal protein L7/L12, oligomerisation (InterPro:IPR008932), Ribosomal protein L7/L12, C-terminal (InterPro:IPR013823); BEST Arabidopsis thaliana protein match is: RPL12-A (RIBOSOMAL PROTEIN L12-A); structural constituent of ribosome (TAIR:AT3G27830.1); Has 5867 Blast hits to 5867 proteins in 1568 species: Archae - 0; Bacteria - 3215; Metazoa - 132; Fungi - 84; Plants - 175; Viruses - 0; Other Eukaryotes - 2261 (source: NCBI BLink).  protein_id AT3G27850.1p  transcript_id AT3G27850.1  protein_id AT3G27850.1p  transcript_id AT3G27850.1  
At3g27860	chr3:010326128	0.0	W/10326128-10328086	AT3G27860.1  CDS  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product PWWP domain-containing protein  note PWWP domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: PWWP domain-containing protein (TAIR:AT5G40340.1); Has 164 Blast hits to 155 proteins in 31 species: Archae - 0; Bacteria - 1; Metazoa - 56; Fungi - 9; Plants - 69; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT3G27860.1p  transcript_id AT3G27860.1  protein_id AT3G27860.1p  transcript_id AT3G27860.1  
At3g27865	chr3:010328510	0.0	W/10328510-10328601	AT3G27865.1  snoRNA  gene_syn 60532.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT3G27865.1  
At3g27870	chr3:010330950	0.0	W/10330950-10331342,10331407-10332727,10332817-10332925,10333018-10333294,10333384-10333472,10333554-10333662,10333774-10333971,10334040-10334165,10334240-10334338,10334414-10334605,10334677-10335288	AT3G27870.1  CDS  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process ATP biosynthetic process|GO:0006754||IEA  go_process metabolic process|GO:0008152||IEA  go_process phospholipid transport|GO:0015914||IEA  go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662||ISS  product haloacid dehalogenase-like hydrolase family protein  note haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: metabolic process, ATP biosynthetic process, phospholipid transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, phospholipid-translocating, flippase (InterPro:IPR006539), ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), HAD superfamily hydrolase-like, type 3 (InterPro:IPR013200), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: haloacid dehalogenase-like hydrolase family protein (TAIR:AT1G68710.1); Has 8622 Blast hits to 7751 proteins in 953 species: Archae - 89; Bacteria - 2041; Metazoa - 2980; Fungi - 1337; Plants - 533; Viruses - 3; Other Eukaryotes - 1639 (source: NCBI BLink).  protein_id AT3G27870.1p  transcript_id AT3G27870.1  protein_id AT3G27870.1p  transcript_id AT3G27870.1  
At3g27880	chr3:010338429	0.0	W/10338429-10339157	AT3G27880.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1645 (InterPro:IPR012442); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23710.1); Has 111 Blast hits to 111 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G27880.1p  transcript_id AT3G27880.1  protein_id AT3G27880.1p  transcript_id AT3G27880.1  
At3g27883	chr3:010339967	0.0	W/10339967-10345348	AT3G27883.1  mRNA_TE_gene  pseudo  gene_syn K16N12.11  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 4.1e-23 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At3g27884	chr3:010346155	0.0	C/10346155-10348282	AT3G27884.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G27884.1  
At3g27886	chr3:010348687	0.0	W/10348687-10349575	AT3G27886.1  mRNA_TE_gene  pseudo  gene_syn K16N12.12  note Transposable element gene, pseudogene, similar to SAE1-S9-protein, blastp match of 22% identity and 3.3e-08 P-value to GP|4760708|dbj|BAA77394.1||AB012866 SAE1-S9-protein {Brassica rapa}  
At3g27890	chr3:010351842	0.0	C/10351842-10351938,10351579-10351770,10350807-10351108	AT3G27890.1  CDS  gene_syn NADPH:QUINONE OXIDOREDUCTASE, NQR  gene NQR  function Encodes NAD(P)H:quinone reductase which is an FMN binding protein that catalyzes the reduction of quinone substrates to hydroquinones.The enzyme activity was confirmed by in vitro assay.  go_component plasma membrane|GO:0005886|15060130|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_function FMN reductase activity|GO:0008752||ISS  product NQR (NADPH:QUINONE OXIDOREDUCTASE); FMN reductase  note NADPH:QUINONE OXIDOREDUCTASE (NQR); FUNCTIONS IN: FMN reductase activity; INVOLVED IN: response to salt stress, defense response to bacterium; LOCATED IN: chloroplast stroma, chloroplast, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NADPH-dependent FMN reductase (InterPro:IPR005025); Has 2573 Blast hits to 2573 proteins in 777 species: Archae - 33; Bacteria - 2216; Metazoa - 4; Fungi - 32; Plants - 32; Viruses - 0; Other Eukaryotes - 256 (source: NCBI BLink).  protein_id AT3G27890.1p  transcript_id AT3G27890.1  protein_id AT3G27890.1p  transcript_id AT3G27890.1  
At3g27895	chr3:010352128	0.0	C/10352128-10352401	AT3G27895.1  mRNA_TE_gene  pseudo  gene_syn K16N12.5  note Transposable element gene, pseudogene, hypothetical protein  
At3g27900	chr3:010352905	0.0	C/10352905-10353639	AT3G27900.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1184 (InterPro:IPR009568); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34560.1); Has 15 Blast hits to 13 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G27900.1p  transcript_id AT3G27900.1  protein_id AT3G27900.1p  transcript_id AT3G27900.1  
At3g27906	chr3:010355861	0.0	C/10355861-10356424	AT3G27906.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19240.1); Has 12 Blast hits to 12 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G27906.1p  transcript_id AT3G27906.1  protein_id AT3G27906.1p  transcript_id AT3G27906.1  
At3g27910	chr3:010357232	0.0	C/10357232-10358116	AT3G27910.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing protein  note kelch repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Kelch repeat type 1 (InterPro:IPR006652), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G39240.1); Has 1979 Blast hits to 1495 proteins in 112 species: Archae - 2; Bacteria - 66; Metazoa - 1348; Fungi - 7; Plants - 469; Viruses - 33; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT3G27910.1p  transcript_id AT3G27910.1  protein_id AT3G27910.1p  transcript_id AT3G27910.1  
At3g27920	chr3:010363368	0.0	C/10363368-10363506,10363129-10363258,10361945-10362362	AT3G27920.1  CDS  gene_syn ATGL1, ATMYB0, GL1, GLABRA 1, MYB DOMAIN PROTEIN 0, TRICHOME DIFFERENTIATION PROTEIN GL1  gene ATMYB0  function Encodes a Myb-like protein that is required for induction of trichome development.  go_component nucleus|GO:0005634|9625690|TAS  go_process cell fate specification|GO:0001708|12244266|IMP  go_process gibberellic acid mediated signaling|GO:0009740|9625690|TAS  go_process regulation of protein localization|GO:0032880|18434419|IMP  go_process trichome patterning|GO:0048629||IMP  go_function DNA binding|GO:0003677|18434419|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9625690|TAS  go_function protein binding|GO:0005515|11063707|IPI  go_function transcription activator activity|GO:0016563|11290293|ISS  product ATMYB0 (MYB DOMAIN PROTEIN 0); DNA binding / protein binding / transcription activator/ transcription factor  note MYB DOMAIN PROTEIN 0 (ATMYB0); FUNCTIONS IN: protein binding, transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: cell fate specification, trichome patterning, regulation of protein localization, gibberellic acid mediated signaling; LOCATED IN: nucleus; EXPRESSED IN: shoot, shoot apex, flower, seed, leaf; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB23 (MYB DOMAIN PROTEIN 23); DNA binding / protein binding / transcription factor (TAIR:AT5G40330.1); Has 6381 Blast hits to 5849 proteins in 369 species: Archae - 0; Bacteria - 0; Metazoa - 663; Fungi - 303; Plants - 3777; Viruses - 3; Other Eukaryotes - 1635 (source: NCBI BLink).  protein_id AT3G27920.1p  transcript_id AT3G27920.1  protein_id AT3G27920.1p  transcript_id AT3G27920.1  
At3g27925	chr3:010368443	0.0	C/10368443-10368864,10368231-10368353,10367901-10368072,10367742-10367779,10367316-10367514,10367045-10367197,10366807-10366941,10366659-10366736	AT3G27925.1  CDS  gene_syn DEGP1, Deg1, DegP protease 1  gene DEGP1  function Encodes a DegP protease; nuclear gene encoding chloroplast-targeted protease that can degrade two lumenal proteins, plastocyanin and OE33, suggesting a role as a general-purpose protease in the thylakoid lumen. Involved in the degradation of D1 protein of PS II, hence participating in the repair of PS II damages caused by photoinhibition.  go_component nucleus|GO:0005634|14617066|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_component chloroplast thylakoid|GO:0009534|9507020|IDA  go_component chloroplast thylakoid membrane|GO:0009535|9507020|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  go_process proteolysis|GO:0006508||ISS  go_process photosystem II repair|GO:0010206|17351117|IMP  go_process protein catabolic process|GO:0030163|12376650|TAS  go_function serine-type endopeptidase activity|GO:0004252|12376650|IDA  go_function serine-type peptidase activity|GO:0008236|17351117|IDA  go_function serine-type peptidase activity|GO:0008236||ISS  product DEGP1 (DegP protease 1); serine-type endopeptidase/ serine-type peptidase  note DegP protease 1 (DEGP1); FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: photosystem II repair, proteolysis, protein catabolic process; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase, trypsin-like serine and cysteine (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1 and S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DEG8; peptidase/ serine-type peptidase (TAIR:AT5G39830.1); Has 11537 Blast hits to 11487 proteins in 1431 species: Archae - 58; Bacteria - 6143; Metazoa - 279; Fungi - 107; Plants - 206; Viruses - 7; Other Eukaryotes - 4737 (source: NCBI BLink).  protein_id AT3G27925.1p  transcript_id AT3G27925.1  protein_id AT3G27925.1p  transcript_id AT3G27925.1  
At3g27930	chr3:010372227	0.0	C/10372227-10372318,10371909-10372053,10371718-10371785,10371574-10371627,10371391-10371474,10371218-10371306,10371058-10371138,10370799-10370929,10370566-10370607,10370373-10370449,10370188-10370278,10370015-10370096,10369851-10369923,10369593-10369761	AT3G27930.1  CDS  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 19 Blast hits to 19 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G27930.1p  transcript_id AT3G27930.1  protein_id AT3G27930.1p  transcript_id AT3G27930.1  
At3g27940	chr3:010375897	0.0	W/10375897-10376358	AT3G27940.1  CDS  gene_syn LBD26, LOB DOMAIN-CONTAINING PROTEIN 26  gene LBD26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product LBD26 (LOB DOMAIN-CONTAINING PROTEIN 26)  note LOB DOMAIN-CONTAINING PROTEIN 26 (LBD26); INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD10 (LOB DOMAIN-CONTAINING PROTEIN 10) (TAIR:AT2G23660.2); Has 404 Blast hits to 404 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 404; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G27940.1p  transcript_id AT3G27940.1  protein_id AT3G27940.1p  transcript_id AT3G27940.1  
At3g27950	chr3:010378048	0.0	W/10378048-10378285,10378592-10378792,10378953-10379083,10379151-10379415,10379521-10379771	AT3G27950.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product early nodule-specific protein, putative  note early nodule-specific protein, putative; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT5G14450.1); Has 1614 Blast hits to 1599 proteins in 76 species: Archae - 0; Bacteria - 67; Metazoa - 1; Fungi - 4; Plants - 1533; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G27950.1p  transcript_id AT3G27950.1  protein_id AT3G27950.1p  transcript_id AT3G27950.1  
At3g27960	chr3:010380813	0.0	C/10380813-10382593,10380513-10380723	AT3G27960.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product kinesin light chain-related  note kinesin light chain-related; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: kinesin light chain-related (TAIR:AT1G27500.1); Has 9900 Blast hits to 4050 proteins in 336 species: Archae - 147; Bacteria - 2771; Metazoa - 5186; Fungi - 556; Plants - 162; Viruses - 3; Other Eukaryotes - 1075 (source: NCBI BLink).  protein_id AT3G27960.1p  transcript_id AT3G27960.1  protein_id AT3G27960.1p  transcript_id AT3G27960.1  
At3g27965	chr3:010385051	0.0	C/10385051-10385625	AT3G27965.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 5.5e-26 P-value blast match to GB:AAB82754 retrofit (TY1_Copia-element) (Oryza longistaminata)  
At3g27968	chr3:010388715	0.0	C/10388715-10388885	AT3G27968.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G27968.1p  transcript_id AT3G27968.1  protein_id AT3G27968.1p  transcript_id AT3G27968.1  
At3g27970	chr3:010389609	0.0	W/10389609-10389649,10389825-10389976,10390081-10390211,10390313-10390740,10390877-10390957,10391304-10391544	AT3G27970.1  CDS  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function exonuclease activity|GO:0004527||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component intracellular|GO:0005622||ISS  go_process biological_process|GO:0008150||ND  go_function exonuclease activity|GO:0004527||ISS  product exonuclease/ nucleic acid binding / zinc ion binding  note exonuclease/ nucleic acid binding / zinc ion binding; FUNCTIONS IN: zinc ion binding, exonuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T and DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: exonuclease family protein (TAIR:AT5G40310.1); Has 1007 Blast hits to 1001 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 537; Fungi - 260; Plants - 131; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT3G27970.1p  transcript_id AT3G27970.1  protein_id AT3G27970.1p  transcript_id AT3G27970.1  
At3g27990	chr3:010392675	0.0	C/10392675-10398175	AT3G27990.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G27990.1  
At3g27980	chr3:010393904	0.0	W/10393904-10394206,10394247-10394498,10394816-10395068,10395176-10395861	AT3G27980.1  CDS  go_component membrane|GO:0016020|17432890|IDA  go_process cell wall modification|GO:0042545||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: membrane, plant-type cell wall; EXPRESSED IN: flower, leaf; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectin methylesterase, putative (TAIR:AT1G11590.1); Has 1313 Blast hits to 1283 proteins in 210 species: Archae - 0; Bacteria - 314; Metazoa - 1; Fungi - 131; Plants - 867; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G27980.1p  transcript_id AT3G27980.1  protein_id AT3G27980.1p  transcript_id AT3G27980.1  
At3g27997	chr3:010400133	0.0	C/10400133-10401382	AT3G27997.1  pseudogenic_transcript  pseudo  function pseudogene of unknown protein  note expressed protein  
At3g27999	chr3:010402886	0.0	W/10402886-10403455	AT3G27999.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  product enzyme inhibitor/ pectinesterase  note enzyme inhibitor/ pectinesterase; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: enzyme inhibitor/ pectinesterase (TAIR:AT1G11593.1); Has 45 Blast hits to 43 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G27999.1p  transcript_id AT3G27999.1  protein_id AT3G27999.1p  transcript_id AT3G27999.1  
At3g28005	chr3:010406447	0.0	C/10406447-10407217	AT3G28005.1  mRNA_TE_gene  pseudo  gene_syn MMG15.3  note Transposable element gene, pseudogene, hypothetical protein  
At3g28007	chr3:010409591	0.0	C/10409591-10409633,10409456-10409492,10409135-10409351,10408727-10408888,10408499-10408618,10408243-10408419	AT3G28007.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  product nodulin MtN3 family protein  note nodulin MtN3 family protein; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: MtN3 and saliva related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), MtN3 and saliva related transmembrane protein (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: AtVEX1 (VEGETATIVE CELL EXPRESSED1) (TAIR:AT5G62850.1); Has 538 Blast hits to 529 proteins in 95 species: Archae - 0; Bacteria - 4; Metazoa - 185; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT3G28007.1p  transcript_id AT3G28007.1  protein_id AT3G28007.1p  transcript_id AT3G28007.1  
At3g28010	chr3:010414328	0.0	C/10414328-10415113	AT3G28010.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G38037.1); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Protein of unknown function DUF321; (InterPro:IPR005529)  
At3g28020	chr3:010419051	0.0	C/10419051-10419149,10418497-10418676,10418362-10418453,10418153-10418303,10417906-10418124	AT3G28020.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ATP binding / DNA binding (TAIR:AT3G48770.1); Has 26 Blast hits to 21 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G28020.1p  transcript_id AT3G28020.1  protein_id AT3G28020.1p  transcript_id AT3G28020.1  
At3g28030	chr3:010424321	0.0	W/10424321-10424408,10424487-10424737,10424827-10425008,10425094-10425151,10425600-10425709,10425795-10425921,10426231-10426308,10426395-10426448,10426552-10426736,10426817-10428473,10428607-10428801,10429138-10429223,10429302-10429539,10429644-10429780,10430005-10430089,10430181-10430597,10430687-10431178	AT3G28030.1  CDS  gene_syn ULTRAVIOLET HYPERSENSITIVE 3, UV REPAIR DEFECTIVE 1, UVH3, UVR1  gene UVH3  function Required for repair of pyrimidine-pyrimidinone (6-4) dimers.  go_component nucleus|GO:0005634||IEA  go_function DNA binding|GO:0003677||IEA  go_function single-stranded DNA binding|GO:0003697||IEA  go_function catalytic activity|GO:0003824||IEA  go_function nuclease activity|GO:0004518||IEA  go_function endonuclease activity|GO:0004519||IEA  go_process DNA repair|GO:0006281||ISS  go_process response to heat|GO:0009408|15923322|IMP  go_process non-photoreactive DNA repair|GO:0010213|9383080|IMP  go_process response to UV-B|GO:0010224|11402206|IGI  go_function nuclease activity|GO:0004518||ISS  product UVH3 (ULTRAVIOLET HYPERSENSITIVE 3); DNA binding / catalytic/ endonuclease/ nuclease/ single-stranded DNA binding  note ULTRAVIOLET HYPERSENSITIVE 3 (UVH3); FUNCTIONS IN: single-stranded DNA binding, DNA binding, catalytic activity, endonuclease activity, nuclease activity; INVOLVED IN: DNA repair, response to UV-B, response to heat, non-photoreactive DNA repair; LOCATED IN: nucleus; EXPRESSED IN: stem, leaf whorl, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Xeroderma pigmentosum group G protein (InterPro:IPR001044), XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG I (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: DNA repair protein, putative (TAIR:AT1G01880.1); Has 6883 Blast hits to 4829 proteins in 438 species: Archae - 372; Bacteria - 243; Metazoa - 2259; Fungi - 1095; Plants - 377; Viruses - 64; Other Eukaryotes - 2473 (source: NCBI BLink).  protein_id AT3G28030.1p  transcript_id AT3G28030.1  protein_id AT3G28030.1p  transcript_id AT3G28030.1  
At3g28040	chr3:010435139	0.0	W/10435139-10436685,10436765-10438268	AT3G28040.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT3G56370.1); Has 154227 Blast hits to 98331 proteins in 3092 species: Archae - 92; Bacteria - 12457; Metazoa - 64370; Fungi - 7122; Plants - 50297; Viruses - 226; Other Eukaryotes - 19663 (source: NCBI BLink).  protein_id AT3G28040.1p  transcript_id AT3G28040.1  protein_id AT3G28040.1p  transcript_id AT3G28040.1  
At3g28050	chr3:010442984	0.0	W/10442984-10443174,10443263-10443328,10443839-10443952,10444101-10444329,10444422-10444583,10444692-10444843,10445027-10445216	AT3G28050.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  product nodulin MtN21 family protein  note nodulin MtN21 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT5G40240.1); Has 1000 Blast hits to 992 proteins in 148 species: Archae - 10; Bacteria - 254; Metazoa - 4; Fungi - 7; Plants - 617; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT3G28050.1p  transcript_id AT3G28050.1  protein_id AT3G28050.1p  transcript_id AT3G28050.1  
At3g28060	chr3:010445860	0.0	W/10445860-10445969,10446044-10446146,10446236-10446397,10446471-10446619,10446723-10446846	AT3G28060.1  CDS  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product nodulin MtN21 family protein  note nodulin MtN21 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT5G40210.1); Has 580 Blast hits to 575 proteins in 27 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 0; Plants - 561; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT3G28060.1p  transcript_id AT3G28060.1  protein_id AT3G28060.1p  transcript_id AT3G28060.1  
At3g28070	chr3:010447964	0.0	W/10447964-10448169,10448282-10448347,10448451-10448564,10449265-10449511,10450227-10450388,10450475-10450623,10450707-10450845	AT3G28070.1  CDS  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product nodulin MtN21 family protein  note nodulin MtN21 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT3G28080.1); Has 1514 Blast hits to 1505 proteins in 240 species: Archae - 12; Bacteria - 594; Metazoa - 6; Fungi - 2; Plants - 619; Viruses - 0; Other Eukaryotes - 281 (source: NCBI BLink).  protein_id AT3G28070.1p  transcript_id AT3G28070.1  protein_id AT3G28070.1p  transcript_id AT3G28070.1  
At3g28070	chr3:010447964	0.0	W/10447964-10448169,10448282-10448347,10448451-10448564,10449265-10449511,10450227-10450388,10450475-10450630	AT3G28070.3  CDS  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product nodulin MtN21 family protein  note nodulin MtN21 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT3G28100.1); Has 979 Blast hits to 971 proteins in 146 species: Archae - 4; Bacteria - 271; Metazoa - 0; Fungi - 2; Plants - 609; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT3G28070.3p  transcript_id AT3G28070.3  protein_id AT3G28070.3p  transcript_id AT3G28070.3  
At3g28070	chr3:010448455	0.0	W/10448455-10448564,10449265-10449511,10450227-10450388,10450475-10450623,10450707-10450845	AT3G28070.2  CDS  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product nodulin MtN21 family protein  note nodulin MtN21 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT3G28100.1); Has 1017 Blast hits to 1010 proteins in 132 species: Archae - 2; Bacteria - 265; Metazoa - 4; Fungi - 2; Plants - 609; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).  protein_id AT3G28070.2p  transcript_id AT3G28070.2  protein_id AT3G28070.2p  transcript_id AT3G28070.2  
At3g28080	chr3:010451567	0.0	W/10451567-10451763,10451838-10451903,10452020-10452133,10453378-10453624,10454444-10454605,10454696-10454844,10454930-10455071	AT3G28080.1  CDS  go_component membrane|GO:0016020||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product nodulin MtN21 family protein  note nodulin MtN21 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT3G28070.1); Has 1413 Blast hits to 1404 proteins in 252 species: Archae - 11; Bacteria - 562; Metazoa - 6; Fungi - 0; Plants - 621; Viruses - 0; Other Eukaryotes - 213 (source: NCBI BLink).  protein_id AT3G28080.1p  transcript_id AT3G28080.1  protein_id AT3G28080.1p  transcript_id AT3G28080.1  
At3g28080	chr3:010451567	0.0	W/10451567-10451763,10451862-10451903,10452020-10452133,10453378-10453624,10454444-10454605,10454696-10454844,10454930-10455071	AT3G28080.2  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product nodulin MtN21 family protein  note nodulin MtN21 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT3G28070.1); Has 1287 Blast hits to 1279 proteins in 202 species: Archae - 9; Bacteria - 437; Metazoa - 4; Fungi - 0; Plants - 618; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).  protein_id AT3G28080.2p  transcript_id AT3G28080.2  protein_id AT3G28080.2p  transcript_id AT3G28080.2  
At3g28100	chr3:010456151	0.0	W/10456151-10456347,10456431-10456496,10456625-10456738,10458770-10459016,10460214-10460375,10460454-10460602,10460687-10460813	AT3G28100.1  CDS  go_component membrane|GO:0016020||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product nodulin MtN21 family protein  note nodulin MtN21 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT3G28070.1); Has 1662 Blast hits to 1653 proteins in 290 species: Archae - 24; Bacteria - 733; Metazoa - 11; Fungi - 3; Plants - 622; Viruses - 0; Other Eukaryotes - 269 (source: NCBI BLink).  protein_id AT3G28100.1p  transcript_id AT3G28100.1  protein_id AT3G28100.1p  transcript_id AT3G28100.1  
At3g28110	chr3:010461763	0.0	W/10461763-10462827	AT3G28110.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G27590.1)  
At3g28120	chr3:010463844	0.0	C/10463844-10463969	AT3G28120.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G28120.1p  transcript_id AT3G28120.1  protein_id AT3G28120.1p  transcript_id AT3G28120.1  
At3g28130	chr3:010465587	0.0	W/10465587-10465780,10465881-10465946,10466087-10466200,10467732-10467978,10468077-10468238,10468315-10468463,10468569-10468704	AT3G28130.2  CDS  go_component membrane|GO:0016020||IEA  go_process biological_process|GO:0008150||ND  product nodulin MtN21 family protein  note nodulin MtN21 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT3G28100.1); Has 1441 Blast hits to 1429 proteins in 229 species: Archae - 12; Bacteria - 550; Metazoa - 8; Fungi - 0; Plants - 614; Viruses - 0; Other Eukaryotes - 257 (source: NCBI BLink).  protein_id AT3G28130.2p  transcript_id AT3G28130.2  protein_id AT3G28130.2p  transcript_id AT3G28130.2  
At3g28130	chr3:010465987	0.0	W/10465987-10465988,10466087-10466200,10467732-10467978,10468077-10468238,10468315-10468463,10468569-10468704	AT3G28130.1  CDS  go_component membrane|GO:0016020||IEA  go_process biological_process|GO:0008150||ND  product nodulin MtN21 family protein  note nodulin MtN21 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT3G28100.1); Has 1052 Blast hits to 1046 proteins in 127 species: Archae - 2; Bacteria - 299; Metazoa - 4; Fungi - 0; Plants - 604; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).  protein_id AT3G28130.1p  transcript_id AT3G28130.1  protein_id AT3G28130.1p  transcript_id AT3G28130.1  
At3g28140	chr3:010470552	0.0	W/10470552-10470989,10471227-10471295	AT3G28140.2  CDS  go_component intracellular|GO:0005622||IEA  go_process RNA metabolic process|GO:0016070||IEA  go_function calmodulin binding|GO:0005516|11782485|ISS  product calmodulin-binding protein  note calmodulin-binding protein; FUNCTIONS IN: calmodulin binding; INVOLVED IN: RNA metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA ligase/cyclic nucleotide phosphodiesterase (InterPro:IPR009097); BEST Arabidopsis thaliana protein match is: calmodulin-binding protein (TAIR:AT5G40190.1); Has 47 Blast hits to 47 proteins in 18 species: Archae - 0; Bacteria - 25; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G28140.2p  transcript_id AT3G28140.2  protein_id AT3G28140.2p  transcript_id AT3G28140.2  
At3g28140	chr3:010470552	0.0	W/10470552-10471106	AT3G28140.1  CDS  go_component intracellular|GO:0005622||IEA  go_process RNA metabolic process|GO:0016070||IEA  go_function calmodulin binding|GO:0005516|11782485|ISS  product calmodulin-binding protein  note calmodulin-binding protein; FUNCTIONS IN: calmodulin binding; INVOLVED IN: RNA metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA ligase/cyclic nucleotide phosphodiesterase (InterPro:IPR009097); BEST Arabidopsis thaliana protein match is: calmodulin-binding protein (TAIR:AT5G40190.1); Has 53 Blast hits to 53 proteins in 21 species: Archae - 0; Bacteria - 31; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G28140.1p  transcript_id AT3G28140.1  protein_id AT3G28140.1p  transcript_id AT3G28140.1  
At3g28150	chr3:010473537	0.0	C/10473537-10473735,10472805-10473085,10471960-10472724	AT3G28150.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G15900.1); Has 706 Blast hits to 688 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 706; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G28150.1p  transcript_id AT3G28150.1  protein_id AT3G28150.1p  transcript_id AT3G28150.1  
At3g28153	chr3:010478206	0.0	C/10478206-10483699	AT3G28153.1  mRNA_TE_gene  pseudo  gene_syn MMG15.19  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.3e-30 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At3g28155	chr3:010485962	0.0	C/10485962-10485991,10485785-10485868,10485615-10485681,10485430-10485504,10485301-10485353	AT3G28155.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: MOR1 (MICROTUBULE ORGANIZATION 1); microtubule binding (TAIR:AT2G35630.1); Has 17 Blast hits to 17 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G28155.1p  transcript_id AT3G28155.1  protein_id AT3G28155.1p  transcript_id AT3G28155.1  
At3g28157	chr3:010493154	0.0	W/10493154-10493681	AT3G28157.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At3g28160	chr3:010494656	0.0	W/10494656-10496791	AT3G28160.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.4e-06 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At3g28170	chr3:010498361	0.0	W/10498361-10498487,10498498-10498579,10499351-10499425,10499814-10499899,10499989-10500166,10500285-10500360	AT3G28170.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G28170.1p  transcript_id AT3G28170.1  protein_id AT3G28170.1p  transcript_id AT3G28170.1  
At3g28180	chr3:010506110	0.0	W/10506110-10506745,10506886-10507194,10507913-10508317,10508396-10509067	AT3G28180.1  CDS  gene_syn ATCSLC04, ATCSLC4, CELLULOSE-SYNTHASE LIKE C4, CSLC04, CSLC4  gene ATCSLC04  function encodes a gene similar to cellulose synthase  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  product ATCSLC04 (CELLULOSE-SYNTHASE LIKE C4); cellulose synthase/ transferase, transferring glycosyl groups  note CELLULOSE-SYNTHASE LIKE C4 (ATCSLC04); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: ATCSLC5 (CELLULOSE-SYNTHASE LIKE C5); cellulose synthase/ transferase, transferring glycosyl groups (TAIR:AT4G31590.1); Has 3330 Blast hits to 3326 proteins in 880 species: Archae - 98; Bacteria - 2514; Metazoa - 13; Fungi - 71; Plants - 316; Viruses - 16; Other Eukaryotes - 302 (source: NCBI BLink).  protein_id AT3G28180.1p  transcript_id AT3G28180.1  protein_id AT3G28180.1p  transcript_id AT3G28180.1  
At3g28190	chr3:010512235	0.0	W/10512235-10512298,10512410-10512441,10512528-10512560,10512647-10512679,10512773-10512868,10512977-10513057	AT3G28190.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G28190.1p  transcript_id AT3G28190.1  protein_id AT3G28190.1p  transcript_id AT3G28190.1  
At3g28193	chr3:010514634	0.0	C/10514634-10514762	AT3G28193.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G28193.1p  transcript_id AT3G28193.1  protein_id AT3G28193.1p  transcript_id AT3G28193.1  
At3g28200	chr3:010518082	0.0	W/10518082-10519032	AT3G28200.1  CDS  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT5G40150.1); Has 3211 Blast hits to 3198 proteins in 254 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 357; Plants - 2802; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT3G28200.1p  transcript_id AT3G28200.1  protein_id AT3G28200.1p  transcript_id AT3G28200.1  
At3g28210	chr3:010520585	0.0	W/10520585-10520692,10520771-10521223	AT3G28210.1  CDS  gene_syn PMZ  gene PMZ  function Encodes a putative zinc finger protein (PMZ).  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process response to abscisic acid stimulus|GO:0009737|16258012|IEP  go_process response to chitin|GO:0010200|17722694|IEP  product PMZ; zinc ion binding  note PMZ; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin, response to abscisic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type, AN1-like) family protein (TAIR:AT3G57480.1); Has 370 Blast hits to 364 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 203; Fungi - 75; Plants - 45; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT3G28210.1p  transcript_id AT3G28210.1  protein_id AT3G28210.1p  transcript_id AT3G28210.1  
At3g28216	chr3:010523278	0.0	C/10523278-10523424	AT3G28216.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G28216.1p  transcript_id AT3G28216.1  protein_id AT3G28216.1p  transcript_id AT3G28216.1  
At3g28220	chr3:010524420	0.0	W/10524420-10524760,10524858-10525030,10525202-10525484,10526089-10526246,10526340-10526497	AT3G28220.1  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process response to salt stress|GO:0009651|11351099|IEP  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: vacuole, chloroplast envelope; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: ZW9 (TAIR:AT1G58270.1); Has 753 Blast hits to 633 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 281; Fungi - 0; Plants - 424; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT3G28220.1p  transcript_id AT3G28220.1  protein_id AT3G28220.1p  transcript_id AT3G28220.1  
At3g28223	chr3:010528510	0.0	C/10528510-10528921,10527669-10528420	AT3G28223.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527); BEST Arabidopsis thaliana protein match is: F-box family protein-related (TAIR:AT3G28330.1); Has 107 Blast hits to 106 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G28223.1p  transcript_id AT3G28223.1  protein_id AT3G28223.1p  transcript_id AT3G28223.1  
At3g28230	chr3:010529314	0.0	W/10529314-10529373,10529457-10529656,10529740-10529803,10529910-10529978,10530068-10530199	AT3G28230.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: EMB2777 (EMBRYO DEFECTIVE 2777) (TAIR:AT2G43650.1); Has 288 Blast hits to 267 proteins in 129 species: Archae - 0; Bacteria - 2; Metazoa - 105; Fungi - 75; Plants - 28; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT3G28230.2p  transcript_id AT3G28230.2  protein_id AT3G28230.2p  transcript_id AT3G28230.2  
At3g28230	chr3:010529314	0.0	W/10529314-10529373,10529460-10529656,10529740-10529803,10529910-10529978,10530068-10530199	AT3G28230.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: EMB2777 (EMBRYO DEFECTIVE 2777) (TAIR:AT2G43650.1); Has 285 Blast hits to 273 proteins in 127 species: Archae - 0; Bacteria - 4; Metazoa - 98; Fungi - 72; Plants - 28; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT3G28230.1p  transcript_id AT3G28230.1  protein_id AT3G28230.1p  transcript_id AT3G28230.1  
At3g28240	chr3:010530925	0.0	C/10530925-10531851	AT3G28240.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G10670.1); similar to hypothetical protein 40.t00048 [Brassica oleracea] (GB:ABD65163.1)  
At3g28243	chr3:010532389	0.0	C/10532389-10532502	AT3G28243.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G28243.1p  transcript_id AT3G28243.1  protein_id AT3G28243.1p  transcript_id AT3G28243.1  
At3g28250	chr3:010533324	0.0	W/10533324-10533689	AT3G28250.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycosyl hydrolase family protein 17  note glycosyl hydrolase family protein 17; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family protein 17 (TAIR:AT2G43670.1); Has 663 Blast hits to 628 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 661; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G28250.1p  transcript_id AT3G28250.1  protein_id AT3G28250.1p  transcript_id AT3G28250.1  
At3g28260	chr3:010534540	0.0	W/10534540-10534585,10534998-10535098,10536118-10536144	AT3G28260.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G28260.1p  transcript_id AT3G28260.1  protein_id AT3G28260.1p  transcript_id AT3G28260.1  
At3g28270	chr3:010538725	0.0	W/10538725-10539849	AT3G28270.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: AT14A (TAIR:AT3G28300.1); Has 443 Blast hits to 436 proteins in 133 species: Archae - 26; Bacteria - 121; Metazoa - 105; Fungi - 15; Plants - 94; Viruses - 1; Other Eukaryotes - 81 (source: NCBI BLink).  protein_id AT3G28270.1p  transcript_id AT3G28270.1  protein_id AT3G28270.1p  transcript_id AT3G28270.1  
At3g28270	chr3:010538725	0.0	W/10538725-10539849	AT3G28270.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: AT14A (TAIR:AT3G28300.1); Has 443 Blast hits to 436 proteins in 133 species: Archae - 26; Bacteria - 121; Metazoa - 105; Fungi - 15; Plants - 94; Viruses - 1; Other Eukaryotes - 81 (source: NCBI BLink).  protein_id AT3G28270.2p  transcript_id AT3G28270.2  protein_id AT3G28270.2p  transcript_id AT3G28270.2  
At3g28280	chr3:010540790	0.0	C/10540790-10541571,10540646-10540700	AT3G28280.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: F-box family protein-related (TAIR:AT3G28330.1); Has 37 Blast hits to 36 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G28280.1p  transcript_id AT3G28280.1  protein_id AT3G28280.1p  transcript_id AT3G28280.1  
At3g28290	chr3:010547873	0.0	W/10547873-10549030	AT3G28290.1  CDS  gene_syn AT14A  gene AT14A  function Encodes a protein with sequence similarity to integrins. Localized to the cytoplasm and plasma membrane. Expressed in all tissues assayed.  go_component cytoplasm|GO:0005737|10196471|IDA  go_component plasma membrane|GO:0005886|10196471|IDA  product AT14A  note AT14A; LOCATED IN: plasma membrane, cytoplasm; EXPRESSED IN: stem, fruit, flower, root, leaf; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: AT14A (TAIR:AT3G28300.1); Has 134 Blast hits to 134 proteins in 31 species: Archae - 4; Bacteria - 28; Metazoa - 4; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT3G28290.1p  transcript_id AT3G28290.1  protein_id AT3G28290.1p  transcript_id AT3G28290.1  
At3g28291	chr3:010550927	0.0	W/10550927-10551106	AT3G28291.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G28291.1p  transcript_id AT3G28291.1  protein_id AT3G28291.1p  transcript_id AT3G28291.1  
At3g28295	chr3:010561580	0.0	W/10561580-10562089	AT3G28295.1  mRNA_TE_gene  pseudo  gene_syn MZF16.27  note Transposable element gene, gypsy-like retrotransposon family, has a 6.4e-29 P-value blast match to aF23C08 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)  
At3g28300	chr3:010566106	0.0	W/10566106-10567263	AT3G28300.1  CDS  gene_syn AT14A, AT14A PROTEIN, MZF16.9  gene AT14A  function Possesses a transmembrane domain and a small region that has sequence similarities to integrins from fungi, insects and humans. Is localized to plasma membrane and cytoplasm.  go_component cytoplasm|GO:0005737|10196471|IDA  go_component cytoplasm|GO:0005737|9807828|TAS  go_component cytoplasm|GO:0005737||ISS  go_component plasma membrane|GO:0005886|10196471|IDA  go_component plasma membrane|GO:0005886|9807828|TAS  go_component plasma membrane|GO:0005886||ISS  go_component integrin complex|GO:0008305|10196471|ISS  product AT14A  note AT14A; LOCATED IN: integrin complex, plasma membrane, cytoplasm; EXPRESSED IN: stem, fruit, flower, root, leaf; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: AT14A (TAIR:AT3G28290.1); Has 134 Blast hits to 134 proteins in 31 species: Archae - 4; Bacteria - 28; Metazoa - 4; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT3G28300.1p  transcript_id AT3G28300.1  protein_id AT3G28300.1p  transcript_id AT3G28300.1  
At3g28310	chr3:010576961	0.0	W/10576961-10577149,10577253-10577375	AT3G28310.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; EXPRESSED DURING: LP.10 ten leaves visible; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: AT14A (TAIR:AT3G28300.1); Has 41 Blast hits to 41 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G28310.1p  transcript_id AT3G28310.1  protein_id AT3G28310.1p  transcript_id AT3G28310.1  
At3g28315	chr3:010577487	0.0	C/10577487-10581488	AT3G28315.1  mRNA_TE_gene  pseudo  gene_syn MZF16.12  note Transposable element gene, copia-like retrotransposon family, has a 1.3e-224 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At3g28320	chr3:010581942	0.0	W/10581942-10582784	AT3G28320.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: AT14A (TAIR:AT3G28300.1); Has 84 Blast hits to 84 proteins in 12 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT3G28320.1p  transcript_id AT3G28320.1  protein_id AT3G28320.1p  transcript_id AT3G28320.1  
At3g28321	chr3:010583134	0.0	C/10583134-10583277	AT3G28321.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G28321.1p  transcript_id AT3G28321.1  protein_id AT3G28321.1p  transcript_id AT3G28321.1  
At3g28330	chr3:010587646	0.0	C/10587646-10587712,10586566-10587548	AT3G28330.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sepal, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28223.1); Has 40 Blast hits to 39 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G28330.1p  transcript_id AT3G28330.1  protein_id AT3G28330.1p  transcript_id AT3G28330.1  
At3g28340	chr3:010589396	0.0	C/10589396-10590493	AT3G28340.1  CDS  gene_syn GATL10, Galacturonosyltransferase-like 10  gene GATL10  function Encodes a protein with putative galacturonosyltransferase activity.  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS  product GATL10 (Galacturonosyltransferase-like 10); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring hexosyl groups  note Galacturonosyltransferase-like 10 (GATL10); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: LGT8 (GLUCOSYL TRANSFERASE FAMILY 8); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT1G70090.2); Has 1262 Blast hits to 1256 proteins in 225 species: Archae - 0; Bacteria - 511; Metazoa - 222; Fungi - 2; Plants - 419; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT3G28340.1p  transcript_id AT3G28340.1  protein_id AT3G28340.1p  transcript_id AT3G28340.1  
At3g28345	chr3:010598539	0.0	C/10598539-10598775,10598230-10598284,10597932-10598110,10597387-10597844,10596344-10596884,10595375-10596256,10593921-10595291	AT3G28345.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process transport|GO:0006810||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ABC transporter family protein  note ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: plasma membrane; EXPRESSED IN: shoot apex, inflorescence meristem, cotyledon, hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PGP17 (P-GLYCOPROTEIN 17); ATP binding / ATPase/ ATPase, coupled to transmembrane movement of substances / nucleoside-triphosphatase/ nucleotide binding (TAIR:AT3G28380.1); Has 489607 Blast hits to 231708 proteins in 2670 species: Archae - 8630; Bacteria - 329147; Metazoa - 15141; Fungi - 7888; Plants - 4658; Viruses - 47; Other Eukaryotes - 124096 (source: NCBI BLink).  protein_id AT3G28345.1p  transcript_id AT3G28345.1  protein_id AT3G28345.1p  transcript_id AT3G28345.1  
At3g28350	chr3:010608359	0.0	W/10608359-10610924	AT3G28350.1  pseudogenic_transcript  pseudo  function Pseudogene of AT3G28350; unknown protein  note similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28370.1); similar to hypothetical protein OsI_021564 [Oryza sativa (indica cultivar-group)] (GB:EAZ00332.1)  
At3g28360	chr3:010616104	0.0	C/10616104-10616301,10614957-10615011,10614667-10614845,10614140-10614597,10613506-10614046,10612531-10613409,10611071-10612447	AT3G28360.1  CDS  gene_syn P-GLYCOPROTEIN 16, PGP16  gene PGP16  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product PGP16 (P-GLYCOPROTEIN 16); ATPase, coupled to transmembrane movement of substances  note P-GLYCOPROTEIN 16 (PGP16); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: integral to membrane; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PGP18 (P-GLYCOPROTEIN 18); ATPase, coupled to transmembrane movement of substances (TAIR:AT3G28390.1); Has 479799 Blast hits to 229718 proteins in 2670 species: Archae - 8528; Bacteria - 323883; Metazoa - 14961; Fungi - 7549; Plants - 4473; Viruses - 42; Other Eukaryotes - 120363 (source: NCBI BLink).  protein_id AT3G28360.1p  transcript_id AT3G28360.1  protein_id AT3G28360.1p  transcript_id AT3G28360.1  
At3g28370	chr3:010620627	0.0	W/10620627-10620699,10620916-10621085,10621194-10621256,10621363-10621382,10621479-10621523,10621595-10621656,10621751-10621878,10622022-10622133,10622283-10622384,10623130-10623209,10623236-10623259	AT3G28370.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51430.1); Has 4868 Blast hits to 3782 proteins in 461 species: Archae - 132; Bacteria - 466; Metazoa - 2329; Fungi - 449; Plants - 205; Viruses - 14; Other Eukaryotes - 1273 (source: NCBI BLink).  protein_id AT3G28370.1p  transcript_id AT3G28370.1  protein_id AT3G28370.1p  transcript_id AT3G28370.1  
At3g28380	chr3:010627965	0.0	C/10627965-10628201,10627619-10627673,10627331-10627509,10626798-10627255,10626168-10626708,10625199-10626080,10623742-10625112	AT3G28380.1  CDS  gene_syn P-GLYCOPROTEIN 17, PGP17  gene PGP17  go_component plasma membrane|GO:0005886|17317660|IDA  go_process transport|GO:0006810||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATPase activity|GO:0016887||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||IEA  product PGP17 (P-GLYCOPROTEIN 17); ATP binding / ATPase/ ATPase, coupled to transmembrane movement of substances / nucleoside-triphosphatase/ nucleotide binding  note P-GLYCOPROTEIN 17 (PGP17); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: transport; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PGP18 (P-GLYCOPROTEIN 18); ATPase, coupled to transmembrane movement of substances (TAIR:AT3G28390.1); Has 497376 Blast hits to 233677 proteins in 2673 species: Archae - 8729; Bacteria - 334341; Metazoa - 15095; Fungi - 7799; Plants - 4757; Viruses - 41; Other Eukaryotes - 126614 (source: NCBI BLink).  protein_id AT3G28380.1p  transcript_id AT3G28380.1  protein_id AT3G28380.1p  transcript_id AT3G28380.1  
At3g28390	chr3:010633767	0.0	C/10633767-10633967,10633319-10633373,10633005-10633183,10632465-10632922,10631848-10632388,10630882-10631754,10629425-10630795	AT3G28390.1  CDS  gene_syn P-GLYCOPROTEIN 18, PGP18  gene PGP18  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product PGP18 (P-GLYCOPROTEIN 18); ATPase, coupled to transmembrane movement of substances  note P-GLYCOPROTEIN 18 (PGP18); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PGP17 (P-GLYCOPROTEIN 17); ATP binding / ATPase/ ATPase, coupled to transmembrane movement of substances / nucleoside-triphosphatase/ nucleotide binding (TAIR:AT3G28380.1); Has 489541 Blast hits to 232271 proteins in 2678 species: Archae - 8663; Bacteria - 330183; Metazoa - 15067; Fungi - 7962; Plants - 4596; Viruses - 43; Other Eukaryotes - 123027 (source: NCBI BLink).  protein_id AT3G28390.1p  transcript_id AT3G28390.1  protein_id AT3G28390.1p  transcript_id AT3G28390.1  
At3g28400	chr3:010635918	0.0	C/10635918-10637945	AT3G28400.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 4.6e-39 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays)  
At3g28410	chr3:010641154	0.0	C/10641154-10642071,10640861-10641037,10640152-10640454	AT3G28410.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G02700.1); Has 1447 Blast hits to 1424 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 5; Plants - 1442; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G28410.1p  transcript_id AT3G28410.1  protein_id AT3G28410.1p  transcript_id AT3G28410.1  
At3g28412	chr3:010643772	0.0	C/10643772-10645328	AT3G28412.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 4.3e-08 P-value blast match to GB:AAC34906 reverse transcriptase (LINE-element) (Forficula auricularia)  
At3g28415	chr3:010651343	0.0	C/10651343-10651540,10650998-10651052,10650707-10650861,10650155-10650612,10649543-10650083,10648573-10649460,10647123-10648493	AT3G28415.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process transport|GO:0006810||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATPase activity|GO:0016887||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||IEA  product P-glycoprotein, putative  note P-glycoprotein, putative; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PGP17 (P-GLYCOPROTEIN 17); ATP binding / ATPase/ ATPase, coupled to transmembrane movement of substances / nucleoside-triphosphatase/ nucleotide binding (TAIR:AT3G28380.1); Has 486699 Blast hits to 232075 proteins in 2671 species: Archae - 8573; Bacteria - 327845; Metazoa - 14938; Fungi - 7684; Plants - 4554; Viruses - 35; Other Eukaryotes - 123070 (source: NCBI BLink).  protein_id AT3G28415.1p  transcript_id AT3G28415.1  protein_id AT3G28415.1p  transcript_id AT3G28415.1  
At3g28420	chr3:010654674	0.0	C/10654674-10655324	AT3G28420.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G28420.1p  transcript_id AT3G28420.1  protein_id AT3G28420.1p  transcript_id AT3G28420.1  
At3g28430	chr3:010662352	0.0	C/10662352-10662404,10661929-10661980,10661779-10661855,10661565-10661698,10661382-10661478,10661244-10661301,10661044-10661152,10660820-10660943,10660481-10660667,10660003-10660328,10659791-10659879,10659641-10659711,10659329-10659439,10659179-10659244,10658912-10659049,10658716-10658821,10658558-10658629,10658383-10658441,10658128-10658287,10657830-10657981,10657441-10657713	AT3G28430.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; Has 186 Blast hits to 180 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 96; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT3G28430.1p  transcript_id AT3G28430.1  protein_id AT3G28430.1p  transcript_id AT3G28430.1  
At3g28440	chr3:010665022	0.0	C/10665022-10665150	AT3G28440.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G28440.1p  transcript_id AT3G28440.1  protein_id AT3G28440.1p  transcript_id AT3G28440.1  
At3g28450	chr3:010667359	0.0	W/10667359-10669176	AT3G28450.1  CDS  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT1G27190.1); Has 63413 Blast hits to 39692 proteins in 1414 species: Archae - 23; Bacteria - 3381; Metazoa - 13925; Fungi - 1676; Plants - 38569; Viruses - 146; Other Eukaryotes - 5693 (source: NCBI BLink).  protein_id AT3G28450.1p  transcript_id AT3G28450.1  protein_id AT3G28450.1p  transcript_id AT3G28450.1  
At3g28455	chr3:010670723	0.0	C/10670723-10670931,10670220-10670256	AT3G28455.1  CDS  gene_syn CLAVATA3/ESR-RELATED 25, CLE25  gene CLE25  function Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can not replace CLV3 function in vivo.  go_component apoplast|GO:0048046|11457943|RCA  go_process signal transduction|GO:0007165||ISS  go_function receptor binding|GO:0005102||ISS  go_function protein binding|GO:0005515|11457943|ISS  product CLE25 (CLAVATA3/ESR-RELATED 25); protein binding / receptor binding  note CLAVATA3/ESR-RELATED 25 (CLE25); FUNCTIONS IN: protein binding, receptor binding; INVOLVED IN: signal transduction; LOCATED IN: apoplast; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G28455.1p  transcript_id AT3G28455.1  protein_id AT3G28455.1p  transcript_id AT3G28455.1  
At3g28460	chr3:010674144	0.0	C/10674144-10674297,10673975-10674066,10673795-10673893,10673611-10673715,10673433-10673537,10673183-10673321,10672976-10673091,10672825-10672881,10672673-10672750	AT3G28460.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function methylase putative (InterPro:IPR016065); Has 3137 Blast hits to 3137 proteins in 859 species: Archae - 2; Bacteria - 1604; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 1510 (source: NCBI BLink).  protein_id AT3G28460.1p  transcript_id AT3G28460.1  protein_id AT3G28460.1p  transcript_id AT3G28460.1  
At3g28470	chr3:010675592	0.0	C/10675592-10675724,10675371-10675500,10674579-10675269	AT3G28470.1  CDS  gene_syn ATMYB35, DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, TDF1  gene TDF1  function Member of the R2R3 factor gene family.  go_component nucleus|GO:0005634|18397379|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process anther morphogenesis|GO:0048654|17666023|IDA  go_process tapetal layer development|GO:0048658|18397379|IMP  go_process microgametogenesis|GO:0055046|18397379|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product TDF1 (DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1); DNA binding / transcription factor  note DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1 (TDF1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: tapetal layer development, anther morphogenesis, regulation of transcription, DNA-dependent, microgametogenesis; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: ATMYB103 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 103); DNA binding / transcription factor (TAIR:AT5G56110.1); Has 6309 Blast hits to 5808 proteins in 351 species: Archae - 0; Bacteria - 0; Metazoa - 661; Fungi - 299; Plants - 3769; Viruses - 5; Other Eukaryotes - 1575 (source: NCBI BLink).  protein_id AT3G28470.1p  transcript_id AT3G28470.1  protein_id AT3G28470.1p  transcript_id AT3G28470.1  
At3g28480	chr3:010678159	0.0	C/10678159-10678262,10677988-10678074,10677845-10677902,10677644-10677748,10677186-10677243,10676907-10677082,10676746-10676806,10676266-10676567	AT3G28480.1  CDS  go_component plasma membrane|GO:0005886|17151019|IDA  go_process protein metabolic process|GO:0019538||IEA  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||IEA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process peptidyl-proline hydroxylation to 4-hydroxy-L-proline|GO:0018401||ISS  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding; INVOLVED IN: protein metabolic process, peptidyl-proline hydroxylation to 4-hydroxy-L-proline; LOCATED IN: Golgi apparatus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), 2OG-Fe(II) oxygenase (InterPro:IPR005123), Metridin-like ShK toxin (InterPro:IPR003582); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT3G28490.1); Has 1937 Blast hits to 1910 proteins in 220 species: Archae - 0; Bacteria - 195; Metazoa - 1028; Fungi - 52; Plants - 228; Viruses - 14; Other Eukaryotes - 420 (source: NCBI BLink).  protein_id AT3G28480.1p  transcript_id AT3G28480.1  protein_id AT3G28480.1p  transcript_id AT3G28480.1  
At3g28490	chr3:010680536	0.0	C/10680536-10680654,10680395-10680452,10680186-10680293,10679973-10680030,10679712-10679887,10679562-10679622,10679150-10679436	AT3G28490.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process protein metabolic process|GO:0019538||IEA  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||IEA  go_process peptidyl-proline hydroxylation to 4-hydroxy-L-proline|GO:0018401||ISS  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding; INVOLVED IN: protein metabolic process, peptidyl-proline hydroxylation to 4-hydroxy-L-proline; LOCATED IN: endomembrane system; EXPRESSED IN: petal, male gametophyte, sepal, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), 2OG-Fe(II) oxygenase (InterPro:IPR005123), Metridin-like ShK toxin (InterPro:IPR003582); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT3G28480.1); Has 1902 Blast hits to 1877 proteins in 217 species: Archae - 0; Bacteria - 194; Metazoa - 1009; Fungi - 53; Plants - 225; Viruses - 14; Other Eukaryotes - 407 (source: NCBI BLink).  protein_id AT3G28490.1p  transcript_id AT3G28490.1  protein_id AT3G28490.1p  transcript_id AT3G28490.1  
At3g28500	chr3:010682204	0.0	W/10682204-10682551	AT3G28500.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_process translational elongation|GO:0006414||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic ribosome|GO:0022626|17934214|IDA  go_process translational elongation|GO:0006414||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S acidic ribosomal protein P2 (RPP2C)  note 60S acidic ribosomal protein P2 (RPP2C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P2 (RPP2E) (TAIR:AT5G40040.1); Has 918 Blast hits to 917 proteins in 250 species: Archae - 48; Bacteria - 1; Metazoa - 282; Fungi - 204; Plants - 184; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink).  protein_id AT3G28500.1p  transcript_id AT3G28500.1  protein_id AT3G28500.1p  transcript_id AT3G28500.1  
At3g28510	chr3:010685656	0.0	W/10685656-10687248	AT3G28510.1  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATPase activity|GO:0016887||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT3G28540.2); Has 32600 Blast hits to 22316 proteins in 1764 species: Archae - 779; Bacteria - 5145; Metazoa - 10551; Fungi - 3473; Plants - 1856; Viruses - 172; Other Eukaryotes - 10624 (source: NCBI BLink).  protein_id AT3G28510.1p  transcript_id AT3G28510.1  protein_id AT3G28510.1p  transcript_id AT3G28510.1  
At3g28520	chr3:010688323	0.0	W/10688323-10689759	AT3G28520.1  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function ATP binding|GO:0005524||ISS  go_function ATPase activity|GO:0016887||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT3G28540.2); Has 13003 Blast hits to 12349 proteins in 1590 species: Archae - 676; Bacteria - 3800; Metazoa - 2227; Fungi - 1517; Plants - 1247; Viruses - 31; Other Eukaryotes - 3505 (source: NCBI BLink).  protein_id AT3G28520.1p  transcript_id AT3G28520.1  protein_id AT3G28520.1p  transcript_id AT3G28520.1  
At3g28530	chr3:010690637	0.0	W/10690637-10690714	AT3G28530.1  CDS  go_process galactose metabolic process|GO:0006012||IEA  go_function UDP-glucose 4-epimerase activity|GO:0003978||IEA  go_component cellular_component|GO:0005575||ND  product UDP-glucose 4-epimerase  note UDP-glucose 4-epimerase; FUNCTIONS IN: UDP-glucose 4-epimerase activity; INVOLVED IN: galactose metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: UDP-glucose 4-epimerase (InterPro:IPR005886); Has 37 Blast hits to 37 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G28530.1p  transcript_id AT3G28530.1  protein_id AT3G28530.1p  transcript_id AT3G28530.1  
At3g28540	chr3:010694444	0.0	W/10694444-10695962,10696002-10696009	AT3G28540.2  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATP binding|GO:0005524||ISS  go_function ATPase activity|GO:0016887||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT3G28510.1); Has 13149 Blast hits to 12625 proteins in 1600 species: Archae - 650; Bacteria - 3752; Metazoa - 2364; Fungi - 1519; Plants - 1194; Viruses - 31; Other Eukaryotes - 3639 (source: NCBI BLink).  protein_id AT3G28540.2p  transcript_id AT3G28540.2  protein_id AT3G28540.2p  transcript_id AT3G28540.2  
At3g28540	chr3:010694444	0.0	W/10694444-10695976	AT3G28540.1  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATP binding|GO:0005524||ISS  go_function ATPase activity|GO:0016887||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT3G28510.1); Has 13107 Blast hits to 12603 proteins in 1595 species: Archae - 648; Bacteria - 3752; Metazoa - 2354; Fungi - 1512; Plants - 1194; Viruses - 31; Other Eukaryotes - 3616 (source: NCBI BLink).  protein_id AT3G28540.1p  transcript_id AT3G28540.1  protein_id AT3G28540.1p  transcript_id AT3G28540.1  
At3g28550	chr3:010700873	0.0	C/10700873-10703929	AT3G28550.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process plant-type cell wall organization|GO:0009664||IEA  go_function structural constituent of cell wall|GO:0005199||IEA  product proline-rich extensin-like family protein  note proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Extensin-like region (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: proline-rich extensin-like family protein (TAIR:AT3G54580.1); Has 376965 Blast hits to 36053 proteins in 1344 species: Archae - 902; Bacteria - 51389; Metazoa - 152451; Fungi - 54673; Plants - 56136; Viruses - 10873; Other Eukaryotes - 50541 (source: NCBI BLink).  protein_id AT3G28550.1p  transcript_id AT3G28550.1  protein_id AT3G28550.1p  transcript_id AT3G28550.1  
At3g28560	chr3:010707603	0.0	W/10707603-10708376	AT3G28560.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT3G28510.1); Has 323 Blast hits to 302 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 2; Plants - 282; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT3G28560.1p  transcript_id AT3G28560.1  protein_id AT3G28560.1p  transcript_id AT3G28560.1  
At3g28570	chr3:010710534	0.0	W/10710534-10711889	AT3G28570.1  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ATP binding|GO:0005524||ISS  go_function ATPase activity|GO:0016887||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (TAIR:AT3G28610.1); Has 13856 Blast hits to 13144 proteins in 1616 species: Archae - 754; Bacteria - 3778; Metazoa - 2741; Fungi - 1859; Plants - 1329; Viruses - 28; Other Eukaryotes - 3367 (source: NCBI BLink).  protein_id AT3G28570.1p  transcript_id AT3G28570.1  protein_id AT3G28570.1p  transcript_id AT3G28570.1  
At3g28580	chr3:010715736	0.0	W/10715736-10717238	AT3G28580.1  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process response to abscisic acid stimulus|GO:0009737|16258012|IEP  go_function ATP binding|GO:0005524||ISS  go_function ATPase activity|GO:0016887||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AATP1 (AAA-ATPase 1); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (TAIR:AT5G40010.1); Has 21424 Blast hits to 16294 proteins in 1659 species: Archae - 765; Bacteria - 4226; Metazoa - 6237; Fungi - 2167; Plants - 1408; Viruses - 64; Other Eukaryotes - 6557 (source: NCBI BLink).  protein_id AT3G28580.1p  transcript_id AT3G28580.1  protein_id AT3G28580.1p  transcript_id AT3G28580.1  
At3g28590	chr3:010718320	0.0	W/10718320-10718333,10718457-10718682	AT3G28590.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G28590.1p  transcript_id AT3G28590.1  protein_id AT3G28590.1p  transcript_id AT3G28590.1  
At3g28600	chr3:010722437	0.0	W/10722437-10723870	AT3G28600.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATP binding|GO:0005524||ISS  go_function ATPase activity|GO:0016887||ISS  product ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding  note ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (TAIR:AT3G28610.1); Has 14119 Blast hits to 13245 proteins in 1613 species: Archae - 754; Bacteria - 4087; Metazoa - 2495; Fungi - 1833; Plants - 1285; Viruses - 28; Other Eukaryotes - 3637 (source: NCBI BLink).  protein_id AT3G28600.1p  transcript_id AT3G28600.1  protein_id AT3G28600.1p  transcript_id AT3G28600.1  
At3g28610	chr3:010724990	0.0	W/10724990-10726414	AT3G28610.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATP binding|GO:0005524||ISS  go_function ATPase activity|GO:0016887||ISS  product ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding  note ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (TAIR:AT3G28600.1); Has 13613 Blast hits to 12896 proteins in 1602 species: Archae - 701; Bacteria - 4104; Metazoa - 2436; Fungi - 1692; Plants - 1201; Viruses - 28; Other Eukaryotes - 3451 (source: NCBI BLink).  protein_id AT3G28610.1p  transcript_id AT3G28610.1  protein_id AT3G28610.1p  transcript_id AT3G28610.1  
At3g28611	chr3:010726555	0.0	C/10726555-10727331	AT3G28611.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G43210; endo/excinuclease amino terminal domain-containing protein  
At3g28620	chr3:010727826	0.0	W/10727826-10728461	AT3G28620.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G43200.1); Has 5202 Blast hits to 5188 proteins in 206 species: Archae - 0; Bacteria - 6; Metazoa - 1702; Fungi - 437; Plants - 2112; Viruses - 25; Other Eukaryotes - 920 (source: NCBI BLink).  protein_id AT3G28620.1p  transcript_id AT3G28620.1  protein_id AT3G28620.1p  transcript_id AT3G28620.1  
At3g28630	chr3:010729065	0.0	W/10729065-10729130,10729242-10729591,10729688-10729970,10730081-10730366,10730542-10730564	AT3G28630.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF569 (InterPro:IPR007679), Actin_cross-linking (InterPro:IPR008999); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G59710.1); Has 121 Blast hits to 110 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G28630.1p  transcript_id AT3G28630.1  protein_id AT3G28630.1p  transcript_id AT3G28630.1  
At3g28630	chr3:010729272	0.0	W/10729272-10729591,10729688-10729970,10730081-10730366,10730542-10730564	AT3G28630.2  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF569 (InterPro:IPR007679), Actin_cross-linking (InterPro:IPR008999); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G59710.1); Has 120 Blast hits to 109 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 116; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G28630.2p  transcript_id AT3G28630.2  protein_id AT3G28630.2p  transcript_id AT3G28630.2  
At3g28640	chr3:010731518	0.0	C/10731518-10732723	AT3G28640.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G28660.1); Has 12381 Blast hits to 4522 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 44; Fungi - 15; Plants - 12177; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink).  protein_id AT3G28640.1p  transcript_id AT3G28640.1  protein_id AT3G28640.1p  transcript_id AT3G28640.1  
At3g28650	chr3:010735729	0.0	W/10735729-10737726	AT3G28650.1  CDS  go_process intracellular signaling cascade|GO:0007242||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular signaling cascade; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT3G27473.1); Has 1271 Blast hits to 475 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 1254; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G28650.1p  transcript_id AT3G28650.1  protein_id AT3G28650.1p  transcript_id AT3G28650.1  
At3g28660	chr3:010739400	0.0	C/10739400-10740914	AT3G28660.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G28640.1); Has 11252 Blast hits to 4552 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 23; Plants - 11012; Viruses - 0; Other Eukaryotes - 170 (source: NCBI BLink).  protein_id AT3G28660.1p  transcript_id AT3G28660.1  protein_id AT3G28660.1p  transcript_id AT3G28660.1  
At3g28670	chr3:010744183	0.0	W/10744183-10744263,10744352-10744564,10744659-10744754,10744962-10745050,10745134-10745262,10745430-10745550,10745867-10745951,10746051-10746160,10746245-10746393,10746492-10746588,10746678-10746983	AT3G28670.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process biological_process|GO:0008150||ND  product oxidoreductase/ zinc ion binding  note oxidoreductase/ zinc ion binding; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); Has 106 Blast hits to 105 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 76; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G28670.1p  transcript_id AT3G28670.1  protein_id AT3G28670.1p  transcript_id AT3G28670.1  
At3g28674	chr3:010747818	0.0	C/10747818-10747994	AT3G28674.1  CDS  product unknown protein  note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04853.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G28674.1p  transcript_id AT3G28674.1  protein_id AT3G28674.1p  transcript_id AT3G28674.1  
At3g28680	chr3:010749533	0.0	C/10749533-10749733,10749341-10749453,10749092-10749252,10748903-10748994,10748751-10748783	AT3G28680.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type peptidase activity|GO:0008236||IEA  product prolylcarboxypeptidase-related  note prolylcarboxypeptidase-related; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase S28 (InterPro:IPR008758); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase S28 family protein (TAIR:AT5G22860.2); Has 386 Blast hits to 386 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 293; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT3G28680.1p  transcript_id AT3G28680.1  protein_id AT3G28680.1p  transcript_id AT3G28680.1  
At3g28685	chr3:010752431	0.0	W/10752431-10752503	AT3G28685.1  tRNA  gene_syn 60555.TRNA-ALA-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: AGC)  transcript_id AT3G28685.1  
At3g28690	chr3:010755412	0.0	W/10755412-10755466,10755910-10756235,10756327-10756462,10756560-10756696,10756787-10756910,10756995-10757494	AT3G28690.3  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT5G15080.1).  protein_id AT3G28690.3p  transcript_id AT3G28690.3  protein_id AT3G28690.3p  transcript_id AT3G28690.3  
At3g28690	chr3:010755481	0.0	W/10755481-10755619,10755910-10756235,10756327-10756462,10756560-10756696,10756787-10756910,10756995-10757494	AT3G28690.2  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT5G15080.1); Has 81261 Blast hits to 80406 proteins in 2696 species: Archae - 46; Bacteria - 7535; Metazoa - 35534; Fungi - 6152; Plants - 18142; Viruses - 344; Other Eukaryotes - 13508 (source: NCBI BLink).  protein_id AT3G28690.2p  transcript_id AT3G28690.2  protein_id AT3G28690.2p  transcript_id AT3G28690.2  
At3g28690	chr3:010756002	0.0	W/10756002-10756235,10756327-10756462,10756560-10756696,10756787-10756910,10756995-10757494	AT3G28690.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT5G15080.1); Has 80605 Blast hits to 79755 proteins in 2727 species: Archae - 46; Bacteria - 7470; Metazoa - 35340; Fungi - 6047; Plants - 17947; Viruses - 344; Other Eukaryotes - 13411 (source: NCBI BLink).  protein_id AT3G28690.1p  transcript_id AT3G28690.1  protein_id AT3G28690.1p  transcript_id AT3G28690.1  
At3g28695	chr3:010759393	0.0	C/10759393-10759465	AT3G28695.1  tRNA  gene_syn 60555.TRNA-ALA-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: AGC)  transcript_id AT3G28695.1  
At3g28700	chr3:010759580	0.0	W/10759580-10759778,10759843-10759904,10759984-10760127,10760231-10760341,10760436-10760628,10760759-10760817,10760935-10760987,10761075-10761297,10761376-10761484,10761572-10761834	AT3G28700.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF185 (InterPro:IPR003788); Has 2768 Blast hits to 2759 proteins in 547 species: Archae - 0; Bacteria - 829; Metazoa - 127; Fungi - 67; Plants - 18; Viruses - 0; Other Eukaryotes - 1727 (source: NCBI BLink).  protein_id AT3G28700.1p  transcript_id AT3G28700.1  protein_id AT3G28700.1p  transcript_id AT3G28700.1  
At3g28705	chr3:010767373	0.0	C/10767373-10772669	AT3G28705.1  mRNA_TE_gene  pseudo  gene_syn MZN14.20  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.8e-25 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)  
At3g28710	chr3:010775414	0.0	C/10775414-10775594,10774993-10775113,10774575-10774682,10774379-10774481,10774184-10774264,10773998-10774083,10773823-10773882,10773684-10773732,10773471-10773605,10773144-10773275	AT3G28710.1  CDS  go_component plant-type vacuole|GO:0000325|16618929|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_function hydrogen ion transmembrane transporter activity|GO:0015078||IEA  go_component vacuolar membrane|GO:0005774|16618929|IDA  go_process proton transport|GO:0015992||ISS  go_function proton-transporting ATPase activity, rotational mechanism|GO:0046961||ISS  product H+-transporting two-sector ATPase, putative  note H+-transporting two-sector ATPase, putative; FUNCTIONS IN: hydrogen ion transmembrane transporter activity, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: proton transport, ATP synthesis coupled proton transport; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: cultured cell, callus; CONTAINS InterPro DOMAIN/s: ATPase, V0/A0 complex, subunit C/D (InterPro:IPR002843), ATPase, V0 complex, subunit D (InterPro:IPR016727); BEST Arabidopsis thaliana protein match is: H+-transporting two-sector ATPase, putative (TAIR:AT3G28715.1); Has 443 Blast hits to 442 proteins in 188 species: Archae - 14; Bacteria - 1; Metazoa - 206; Fungi - 98; Plants - 47; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT3G28710.1p  transcript_id AT3G28710.1  protein_id AT3G28710.1p  transcript_id AT3G28710.1  
At3g28715	chr3:010778025	0.0	W/10778025-10778205,10778470-10778590,10778820-10778927,10779046-10779148,10779262-10779342,10779443-10779528,10779625-10779684,10779772-10779820,10779904-10780038,10780219-10780350	AT3G28715.1  CDS  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_function hydrogen ion transmembrane transporter activity|GO:0015078||IEA  go_process proton transport|GO:0015992||ISS  go_function proton-transporting ATPase activity, rotational mechanism|GO:0046961||ISS  product H+-transporting two-sector ATPase, putative  note H+-transporting two-sector ATPase, putative; FUNCTIONS IN: hydrogen ion transmembrane transporter activity, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: proton transport, ATP synthesis coupled proton transport; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: ATPase, V0/A0 complex, subunit C/D (InterPro:IPR002843), ATPase, V0 complex, subunit D (InterPro:IPR016727); BEST Arabidopsis thaliana protein match is: H+-transporting two-sector ATPase, putative (TAIR:AT3G28710.1); Has 448 Blast hits to 447 proteins in 191 species: Archae - 19; Bacteria - 1; Metazoa - 206; Fungi - 98; Plants - 47; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT3G28715.1p  transcript_id AT3G28715.1  protein_id AT3G28715.1p  transcript_id AT3G28715.1  
At3g28720	chr3:010782276	0.0	W/10782276-10784339	AT3G28720.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58100.1); Has 1801 Blast hits to 252 proteins in 55 species: Archae - 0; Bacteria - 510; Metazoa - 284; Fungi - 57; Plants - 57; Viruses - 0; Other Eukaryotes - 893 (source: NCBI BLink).  protein_id AT3G28720.1p  transcript_id AT3G28720.1  protein_id AT3G28720.1p  transcript_id AT3G28720.1  
At3g28730	chr3:010784954	0.0	W/10784954-10785007,10785294-10785479,10785556-10785661,10785752-10785888,10785967-10786050,10786132-10786226,10786314-10786422,10786558-10786644,10786743-10786835,10786915-10787112,10787200-10787345,10787436-10787583,10787664-10787771,10787853-10788035,10788194-10788272,10788371-10788498	AT3G28730.1  CDS  gene_syn ARABIDOPSIS THALIANA HIGH MOBILITY GROUP, ATHMG, NFD, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D, SSRP1  gene ATHMG  function encodes a component of the FAcilitates Chromatin Transcription (FACT) complex, SSRP1  go_component nucleus|GO:0005634|15546350|IDA  go_component nuclear euchromatin|GO:0005719|15546350|IDA  go_component FACT complex|GO:0035101|15546350|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  product ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP); transcription factor  note ARABIDOPSIS THALIANA HIGH MOBILITY GROUP (ATHMG); FUNCTIONS IN: transcription factor activity; LOCATED IN: FACT complex, nuclear euchromatin, nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Structure-specific recognition protein (InterPro:IPR000969), High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: high mobility group (HMG1/2) family protein (TAIR:AT4G23800.1); Has 6512 Blast hits to 5814 proteins in 532 species: Archae - 0; Bacteria - 11; Metazoa - 4809; Fungi - 567; Plants - 416; Viruses - 13; Other Eukaryotes - 696 (source: NCBI BLink).  protein_id AT3G28730.1p  transcript_id AT3G28730.1  protein_id AT3G28730.1p  transcript_id AT3G28730.1  
At3g28740	chr3:010790028	0.0	C/10790028-10790552,10789468-10789851,10788764-10789384	AT3G28740.1  CDS  gene_syn CYP81D1  gene CYP81D1  function Encodes a member of the cytochrome p450 family. Expression is upregulated in response to cis-jasmonate treatment. Overexpression induces synthesis of volatile compounds that affect chemical ecology and insect interactions.  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process defense response to insect|GO:0002213|18356298|IMP  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function oxygen binding|GO:0019825||ISS  product CYP81D1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP81D1; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: response to cyclopentenone, defense response to insect; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP81D7; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT2G23190.1); Has 25224 Blast hits to 25134 proteins in 1377 species: Archae - 32; Bacteria - 3166; Metazoa - 10384; Fungi - 4685; Plants - 5706; Viruses - 3; Other Eukaryotes - 1248 (source: NCBI BLink).  protein_id AT3G28740.1p  transcript_id AT3G28740.1  protein_id AT3G28740.1p  transcript_id AT3G28740.1  
At3g28750	chr3:010791772	0.0	C/10791772-10792773	AT3G28750.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39880.1); Has 30 Blast hits to 25 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G28750.1p  transcript_id AT3G28750.1  protein_id AT3G28750.1p  transcript_id AT3G28750.1  
At3g28760	chr3:010795226	0.0	C/10795226-10795304,10794727-10794972,10794477-10794643,10794296-10794394,10794152-10794220,10793933-10794073,10793745-10793834,10793495-10793662,10793331-10793412,10793126-10793253	AT3G28760.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 3-dehydroquinate synthase, prokaryotic-type (InterPro:IPR002812); Has 259 Blast hits to 259 proteins in 76 species: Archae - 86; Bacteria - 48; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT3G28760.1p  transcript_id AT3G28760.1  protein_id AT3G28760.1p  transcript_id AT3G28760.1  
At3g28760	chr3:010795226	0.0	C/10795226-10795304,10794727-10795038,10794477-10794643,10794296-10794394,10794152-10794220,10793933-10794073,10793745-10793834,10793495-10793662,10793331-10793412,10793126-10793253	AT3G28760.2  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 3-dehydroquinate synthase, prokaryotic-type (InterPro:IPR002812); Has 259 Blast hits to 259 proteins in 76 species: Archae - 86; Bacteria - 48; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT3G28760.2p  transcript_id AT3G28760.2  protein_id AT3G28760.2p  transcript_id AT3G28760.2  
At3g28770	chr3:010796716	0.0	W/10796716-10797057,10797253-10802790,10802872-10803237	AT3G28770.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, epidermis; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1216 (InterPro:IPR009605); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28820.1); Has 819067 Blast hits to 116690 proteins in 2310 species: Archae - 2815; Bacteria - 104433; Metazoa - 305721; Fungi - 73300; Plants - 28513; Viruses - 4248; Other Eukaryotes - 300037 (source: NCBI BLink).  protein_id AT3G28770.1p  transcript_id AT3G28770.1  protein_id AT3G28770.1p  transcript_id AT3G28770.1  
At3g28780	chr3:010808019	0.0	C/10808019-10808369,10806131-10807804	AT3G28780.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process pollen exine formation|GO:0010584||IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen exine formation; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1216 (InterPro:IPR009605); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28840.1); Has 396910 Blast hits to 92924 proteins in 2691 species: Archae - 1125; Bacteria - 125616; Metazoa - 97313; Fungi - 29013; Plants - 31379; Viruses - 6861; Other Eukaryotes - 105603 (source: NCBI BLink).  protein_id AT3G28780.1p  transcript_id AT3G28780.1  protein_id AT3G28780.1p  transcript_id AT3G28780.1  
At3g28790	chr3:010815232	0.0	C/10815232-10815588,10813935-10815143,10813577-10813837	AT3G28790.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1216 (InterPro:IPR009605); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28830.1); Has 150549 Blast hits to 71952 proteins in 2277 species: Archae - 526; Bacteria - 25513; Metazoa - 54919; Fungi - 26965; Plants - 6110; Viruses - 2966; Other Eukaryotes - 33550 (source: NCBI BLink).  protein_id AT3G28790.1p  transcript_id AT3G28790.1  protein_id AT3G28790.1p  transcript_id AT3G28790.1  
At3g28800	chr3:010817053	0.0	C/10817053-10818113	AT3G28800.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 2.5e-23 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g28810	chr3:010823591	0.0	C/10823591-10823941,10822825-10823514,10822471-10822734	AT3G28810.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1216 (InterPro:IPR009605); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28820.1); Has 14697 Blast hits to 4881 proteins in 580 species: Archae - 24; Bacteria - 2522; Metazoa - 2735; Fungi - 1516; Plants - 214; Viruses - 105; Other Eukaryotes - 7581 (source: NCBI BLink).  protein_id AT3G28810.1p  transcript_id AT3G28810.1  protein_id AT3G28810.1p  transcript_id AT3G28810.1  
At3g28820	chr3:010827714	0.0	W/10827714-10828064,10828347-10829036,10829133-10829396	AT3G28820.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1216 (InterPro:IPR009605); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28810.1); Has 15757 Blast hits to 5144 proteins in 609 species: Archae - 26; Bacteria - 2474; Metazoa - 2889; Fungi - 1560; Plants - 210; Viruses - 125; Other Eukaryotes - 8473 (source: NCBI BLink).  protein_id AT3G28820.1p  transcript_id AT3G28820.1  protein_id AT3G28820.1p  transcript_id AT3G28820.1  
At3g28830	chr3:010831233	0.0	W/10831233-10831586,10831673-10832665,10832748-10833020	AT3G28830.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1216 (InterPro:IPR009605); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28790.1); Has 83045 Blast hits to 33807 proteins in 1716 species: Archae - 192; Bacteria - 18046; Metazoa - 27193; Fungi - 11447; Plants - 2647; Viruses - 992; Other Eukaryotes - 22528 (source: NCBI BLink).  protein_id AT3G28830.1p  transcript_id AT3G28830.1  protein_id AT3G28830.1p  transcript_id AT3G28830.1  
At3g28840	chr3:010838469	0.0	W/10838469-10838813,10838904-10839734	AT3G28840.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1216 (InterPro:IPR009605); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28780.1); Has 171504 Blast hits to 51377 proteins in 2103 species: Archae - 315; Bacteria - 71680; Metazoa - 33281; Fungi - 10135; Plants - 10165; Viruses - 2476; Other Eukaryotes - 43452 (source: NCBI BLink).  protein_id AT3G28840.1p  transcript_id AT3G28840.1  protein_id AT3G28840.1p  transcript_id AT3G28840.1  
At3g28850	chr3:010848669	0.0	W/10848669-10849955	AT3G28850.1  CDS  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  product glutaredoxin family protein  note glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: N-terminal protein myristoylation, cell redox homeostasis; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin family protein (TAIR:AT5G39865.1); Has 422 Blast hits to 412 proteins in 81 species: Archae - 0; Bacteria - 39; Metazoa - 112; Fungi - 14; Plants - 211; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT3G28850.1p  transcript_id AT3G28850.1  protein_id AT3G28850.1p  transcript_id AT3G28850.1  
At3g28855	chr3:010853866	0.0	C/10853866-10854553	AT3G28855.1  mRNA_TE_gene  pseudo  gene_syn MLD15.1  note Transposable element gene, pseudogene, hypothetical protein  
At3g28857	chr3:010856188	0.0	C/10856188-10856313,10855781-10855933	AT3G28857.1  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription regulator activity|GO:0030528||IEA  product transcription regulator  note transcription regulator; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092); BEST Arabidopsis thaliana protein match is: PRE1 (PACLOBUTRAZOL RESISTANCE1); DNA binding / transcription factor (TAIR:AT5G39860.1); Has 72 Blast hits to 72 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G28857.1p  transcript_id AT3G28857.1  protein_id AT3G28857.1p  transcript_id AT3G28857.1  
At3g28860	chr3:010877032	0.0	C/10877032-10877286,10876896-10876950,10875845-10876020,10875026-10875226,10874533-10874792,10874122-10874438,10873812-10874035,10872910-10873729,10872589-10872830,10870287-10871495	AT3G28860.1  CDS  gene_syn ABCB19, ATABCB19, ATMDR1, ATMDR11, ATP BINDING CASSETTE SUBFAMILY B19, ATPGP19, MDR1, MDR11, MULTIDRUG RESISTANCE PROTEIN 11, P-GLYCOPROTEIN 19, PGP19  gene ABCB19  function Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR11 and PGP19. Possibly regulates auxin-dependent responses by influencing basipetal auxin transport in the root. Acts upstream of phyA in regulating hypocotyl elongation and gravitropic response. Exerts nonredundant, partially overlapping functions with the ABC transporter encoded by AtPGP1.  go_component plasma membrane|GO:0005886|16601150|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_process regulation of cell size|GO:0008361|15908594|IMP  go_process response to blue light|GO:0009637|15908594|IMP  go_process response to red or far red light|GO:0009639|15908594|IMP  go_process photomorphogenesis|GO:0009640|15908594|IMP  go_process response to auxin stimulus|GO:0009733|15908594|IMP  go_process auxin polar transport|GO:0009926|11701880|IMP  go_process positive gravitropism|GO:0009958|15908594|IMP  go_process response to far red light|GO:0010218|15908594|IMP  go_process basipetal auxin transport|GO:0010540|11701880|IMP  go_process acropetal auxin transport|GO:0010541|17557805|IMP  go_process anthocyanin accumulation in tissues in response to UV light|GO:0043481|15908594|IMP  go_process root development|GO:0048364|17557805|IMP  go_process stamen development|GO:0048443|18628351|IGI  go_process lateral root development|GO:0048527|17557807|IMP  go_function auxin efflux transmembrane transporter activity|GO:0010329|16601150|IDA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ABCB19; ATPase, coupled to transmembrane movement of substances / auxin efflux transmembrane transporter  note ABCB19; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, auxin efflux transmembrane transporter activity; INVOLVED IN: in 14 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABCB1 (ATP BINDING CASSETTE SUBFAMILY B1); ATPase, coupled to transmembrane movement of substances / auxin efflux transmembrane transporter/ calmodulin binding (TAIR:AT2G36910.1); Has 490410 Blast hits to 230951 proteins in 2665 species: Archae - 8571; Bacteria - 331768; Metazoa - 14999; Fungi - 7818; Plants - 4470; Viruses - 33; Other Eukaryotes - 122751 (source: NCBI BLink).  protein_id AT3G28860.1p  transcript_id AT3G28860.1  protein_id AT3G28860.1p  transcript_id AT3G28860.1  
At3g28865	chr3:010880168	0.0	C/10880168-10889469	AT3G28865.1  mRNA_TE_gene  pseudo  gene_syn MLD15.3  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 5.8e-16 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At3g28870	chr3:010890355	0.0	W/10890355-10890727,10890809-10890855,10890956-10891356,10891533-10891620,10891681-10891839	AT3G28870.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Sec63 domain (InterPro:IPR004179); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24260.1); Has 392 Blast hits to 388 proteins in 87 species: Archae - 0; Bacteria - 8; Metazoa - 234; Fungi - 20; Plants - 74; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT3G28870.1p  transcript_id AT3G28870.1  protein_id AT3G28870.1p  transcript_id AT3G28870.1  
At3g28880	chr3:010892435	0.0	W/10892435-10892499,10892779-10893261,10893375-10893399,10893475-10893843,10893924-10894054,10894147-10894255,10894335-10894480,10894729-10895383,10895467-10895768,10895862-10895895	AT3G28880.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT2G03430.1); Has 24044 Blast hits to 11144 proteins in 504 species: Archae - 34; Bacteria - 1424; Metazoa - 11857; Fungi - 1058; Plants - 420; Viruses - 227; Other Eukaryotes - 9024 (source: NCBI BLink).  protein_id AT3G28880.1p  transcript_id AT3G28880.1  protein_id AT3G28880.1p  transcript_id AT3G28880.1  
At3g28890	chr3:010896706	0.0	C/10896706-10898841	AT3G28890.1  CDS  gene_syn AtRLP43, Receptor Like Protein 43  gene AtRLP43  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  go_function kinase activity|GO:0016301||ISS  product AtRLP43 (Receptor Like Protein 43); kinase/ protein binding  note Receptor Like Protein 43 (AtRLP43); FUNCTIONS IN: protein binding, kinase activity; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: stem, inflorescence meristem, leaf whorl, stamen, leaf; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP34 (Receptor Like Protein 34); kinase/ protein binding (TAIR:AT3G11010.1); Has 64490 Blast hits to 19880 proteins in 785 species: Archae - 43; Bacteria - 4419; Metazoa - 19107; Fungi - 633; Plants - 35463; Viruses - 5; Other Eukaryotes - 4820 (source: NCBI BLink).  protein_id AT3G28890.1p  transcript_id AT3G28890.1  protein_id AT3G28890.1p  transcript_id AT3G28890.1  
At3g28890	chr3:010896706	0.0	C/10896706-10898841	AT3G28890.2  CDS  gene_syn AtRLP43, Receptor Like Protein 43  gene AtRLP43  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  go_function kinase activity|GO:0016301||ISS  product AtRLP43 (Receptor Like Protein 43); kinase/ protein binding  note Receptor Like Protein 43 (AtRLP43); FUNCTIONS IN: protein binding, kinase activity; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: stem, inflorescence meristem, leaf whorl, stamen, leaf; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP34 (Receptor Like Protein 34); kinase/ protein binding (TAIR:AT3G11010.1).  protein_id AT3G28890.2p  transcript_id AT3G28890.2  protein_id AT3G28890.2p  transcript_id AT3G28890.2  
At3g28899	chr3:010902327	0.0	W/10902327-10902515	AT3G28899.1  CDS  product unknown protein  note unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G28899.1p  transcript_id AT3G28899.1  protein_id AT3G28899.1p  transcript_id AT3G28899.1  
At3g28900	chr3:010904337	0.0	C/10904337-10904415,10904150-10904229,10903037-10903146,10902864-10902957	AT3G28900.1  CDS  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L34 (RPL34C)  note 60S ribosomal protein L34 (RPL34C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e, conserved site (InterPro:IPR018065), Ribosomal protein L34e (InterPro:IPR008195); BEST Arabidopsis thaliana protein match is: RPL34 (RIBOSOMAL PROTEIN L34); structural constituent of ribosome (TAIR:AT1G69620.1); Has 578 Blast hits to 578 proteins in 226 species: Archae - 26; Bacteria - 0; Metazoa - 236; Fungi - 98; Plants - 100; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).  protein_id AT3G28900.1p  transcript_id AT3G28900.1  protein_id AT3G28900.1p  transcript_id AT3G28900.1  
At3g28910	chr3:010911443	0.0	W/10911443-10911575,10911902-10912031,10912148-10912856	AT3G28910.1  CDS  gene_syn ATMYB30, MYB DOMAIN PROTEIN 30, MYB30  gene MYB30  function transcription factor myb homologue  go_process response to bacterium|GO:0009617|10571865|IEP  go_process plant-type hypersensitive response|GO:0009626|10571865|IEP  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process very-long-chain fatty acid biosynthetic process|GO:0042761|18326828|IMP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|10571865|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB30 (MYB DOMAIN PROTEIN 30); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 30 (MYB30); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 11 processes; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB96 (myb domain protein 96); DNA binding / transcription factor (TAIR:AT5G62470.2); Has 7153 Blast hits to 5897 proteins in 379 species: Archae - 0; Bacteria - 9; Metazoa - 966; Fungi - 330; Plants - 3730; Viruses - 10; Other Eukaryotes - 2108 (source: NCBI BLink).  protein_id AT3G28910.1p  transcript_id AT3G28910.1  protein_id AT3G28910.1p  transcript_id AT3G28910.1  
At3g28915	chr3:010917551	0.0	C/10917551-10922630	AT3G28915.1  mRNA_TE_gene  pseudo  gene_syn MLD15.9  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 7.3e-24 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At3g28917	chr3:010925014	0.0	W/10925014-10925316	AT3G28917.1  CDS  gene_syn MIF2, MINI ZINC FINGER 2  gene MIF2  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677|16412086|ISS  product MIF2 (MINI ZINC FINGER 2); DNA binding  note MINI ZINC FINGER 2 (MIF2); FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: stem, fruit, flower, inflorescence; CONTAINS InterPro DOMAIN/s: ZF-HD homeobox protein Cys/His-rich dimerisation region (InterPro:IPR006456); BEST Arabidopsis thaliana protein match is: MIF3 (MINI ZINC FINGER) (TAIR:AT1G18835.1); Has 224 Blast hits to 224 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 224; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G28917.1p  transcript_id AT3G28917.1  protein_id AT3G28917.1p  transcript_id AT3G28917.1  
At3g28918	chr3:010932966	0.0	W/10932966-10933058	AT3G28918.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G28918.1p  transcript_id AT3G28918.1  protein_id AT3G28918.1p  transcript_id AT3G28918.1  
At3g28920	chr3:010940598	0.0	C/10940598-10941536	AT3G28920.1  CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 34, AtHB34  gene AtHB34  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677|16428600|ISS  go_function transcription factor activity|GO:0003700||ISS  product AtHB34 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 34); DNA binding / transcription factor  note ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 34 (AtHB34); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein Cys/His-rich dimerisation region (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: AtHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23); DNA binding / transcription factor (TAIR:AT5G39760.1); Has 369 Blast hits to 363 proteins in 70 species: Archae - 0; Bacteria - 8; Metazoa - 31; Fungi - 30; Plants - 274; Viruses - 5; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT3G28920.1p  transcript_id AT3G28920.1  protein_id AT3G28920.1p  transcript_id AT3G28920.1  
At3g28923	chr3:010954202	0.0	W/10954202-10954708	AT3G28923.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G01080; beta-galactosidase  
At3g28925	chr3:010957887	0.0	W/10957887-10957923,10958041-10958114,10958330-10958426,10958533-10958619,10958680-10958793,10958834-10958879,10959293-10959581	AT3G28925.1  CDS  product unknown protein  note BEST Arabidopsis thaliana protein match is: ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3); ATP binding / transporter (TAIR:AT5G48600.1); Has 57 Blast hits to 45 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT3G28925.1p  transcript_id AT3G28925.1  protein_id AT3G28925.1p  transcript_id AT3G28925.1  
At3g28930	chr3:010960604	0.0	C/10960604-10960728,10960448-10960520,10960286-10960378,10960118-10960201,10959890-10960027	AT3G28930.1  CDS  gene_syn AIG2, AVRRPT2-INDUCED GENE 2  gene AIG2  function avrRpt2-induced gene that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2  go_component cellular_component|GO:0005575||ND  go_process response to bacterium|GO:0009617|8742710|IEP  go_function molecular_function|GO:0003674||ND  product AIG2 (AVRRPT2-INDUCED GENE 2)  note AVRRPT2-INDUCED GENE 2 (AIG2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to bacterium; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Butirosin biosynthesis, BtrG-like (InterPro:IPR013024), AIG2-like (InterPro:IPR009288); BEST Arabidopsis thaliana protein match is: avirulence-responsive protein, putative / avirulence induced gene (AIG) protein, putative (TAIR:AT3G28940.1); Has 162 Blast hits to 162 proteins in 47 species: Archae - 2; Bacteria - 25; Metazoa - 0; Fungi - 39; Plants - 61; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT3G28930.1p  transcript_id AT3G28930.1  protein_id AT3G28930.1p  transcript_id AT3G28930.1  
At3g28940	chr3:010969187	0.0	C/10969187-10969311,10969008-10969080,10968705-10968797,10968534-10968617,10968324-10968458	AT3G28940.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process response to bacterium|GO:0009617||ISS  go_function molecular_function|GO:0003674||ND  product avirulence-responsive protein, putative / avirulence induced gene (AIG) protein, putative  note avirulence-responsive protein, putative / avirulence induced gene (AIG) protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to bacterium; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: AIG2-like (InterPro:IPR009288); BEST Arabidopsis thaliana protein match is: AIG2 (AVRRPT2-INDUCED GENE 2) (TAIR:AT3G28930.1); Has 163 Blast hits to 163 proteins in 50 species: Archae - 2; Bacteria - 27; Metazoa - 0; Fungi - 42; Plants - 61; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT3G28940.1p  transcript_id AT3G28940.1  protein_id AT3G28940.1p  transcript_id AT3G28940.1  
At3g28945	chr3:010970273	0.0	C/10970273-10975947	AT3G28945.1  mRNA_TE_gene  pseudo  gene_syn K5K13.5  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.5e-29 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At3g28950	chr3:010977249	0.0	C/10977249-10977370,10977103-10977175,10976917-10977009,10976734-10976817,10976359-10976484	AT3G28950.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related  note avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Butirosin biosynthesis, BtrG-like (InterPro:IPR013024), AIG2-like (InterPro:IPR009288); BEST Arabidopsis thaliana protein match is: avirulence-responsive protein, putative / avirulence induced gene (AIG) protein, putative (TAIR:AT3G28940.1); Has 208 Blast hits to 208 proteins in 61 species: Archae - 2; Bacteria - 43; Metazoa - 0; Fungi - 58; Plants - 60; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT3G28950.1p  transcript_id AT3G28950.1  protein_id AT3G28950.1p  transcript_id AT3G28950.1  
At3g28955	chr3:010978068	0.0	C/10978068-10978935	AT3G28955.1  mRNA_TE_gene  pseudo  gene_syn K5K13.16  note Transposable element gene, pseudogene, hypothetical protein, contains similarity to many putative replication proteins, A1  
At3g28956	chr3:010981264	0.0	C/10981264-10981380,10981035-10981187,10980789-10980932	AT3G28956.1  CDS  go_process cellular metabolic process|GO:0044237||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  product catalytic/ nucleotide binding  note catalytic/ nucleotide binding; FUNCTIONS IN: nucleotide binding, catalytic activity; INVOLVED IN: cellular metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HRDC-like (InterPro:IPR010997), RNA polymerase II, Rpb4, core (InterPro:IPR006590); BEST Arabidopsis thaliana protein match is: catalytic/ nucleotide binding (TAIR:AT5G62950.1); Has 103 Blast hits to 103 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 71; Fungi - 8; Plants - 21; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G28956.1p  transcript_id AT3G28956.1  protein_id AT3G28956.1p  transcript_id AT3G28956.1  
At3g28958	chr3:010982706	0.0	W/10982706-10982831,10982913-10983090,10983175-10983300,10983435-10983532	AT3G28958.1  CDS  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function copper ion binding|GO:0005507||ISS  product plastocyanin-like domain-containing protein  note plastocyanin-like domain-containing protein; FUNCTIONS IN: electron carrier activity, copper ion binding; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: copper ion binding / electron carrier (TAIR:AT1G45063.2); Has 18 Blast hits to 15 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G28958.1p  transcript_id AT3G28958.1  protein_id AT3G28958.1p  transcript_id AT3G28958.1  
At3g28960	chr3:010985677	0.0	C/10985677-10985767,10984994-10985601,10984245-10984763	AT3G28960.1  CDS  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product amino acid transporter family protein  note amino acid transporter family protein; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid transporter family protein (TAIR:AT5G15240.1); Has 3307 Blast hits to 3250 proteins in 207 species: Archae - 8; Bacteria - 41; Metazoa - 1550; Fungi - 565; Plants - 669; Viruses - 8; Other Eukaryotes - 466 (source: NCBI BLink).  protein_id AT3G28960.1p  transcript_id AT3G28960.1  protein_id AT3G28960.1p  transcript_id AT3G28960.1  
At3g28970	chr3:010989722	0.0	C/10989722-10989782,10989359-10989485,10989107-10989158,10988944-10989019,10988782-10988864,10988605-10988701,10988490-10988535,10988323-10988402,10987970-10988235	AT3G28970.1  CDS  gene_syn AAR3, antiauxin-resistant 3  gene AAR3  function Identified in a screen for mutants resistant to an anti-auxin. Encodes a protein with unknown function that shares homology with DCN protein family.  go_component nucleus|GO:0005634|17905859|ISS  go_process auxin mediated signaling pathway|GO:0009734|17905859|IMP  go_function molecular_function|GO:0003674||ND  product AAR3 (antiauxin-resistant 3)  note antiauxin-resistant 3 (AAR3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: auxin mediated signaling pathway; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Defective in cullin neddylation (InterPro:IPR014764), Protein of unknown function DUF298 (InterPro:IPR005176); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12760.1); Has 580 Blast hits to 580 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 388; Fungi - 90; Plants - 57; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT3G28970.1p  transcript_id AT3G28970.1  protein_id AT3G28970.1p  transcript_id AT3G28970.1  
At3g28980	chr3:010994575	0.0	C/10994575-10994925,10993779-10994492,10993403-10993675	AT3G28980.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1216 (InterPro:IPR009605); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28810.1); Has 17108 Blast hits to 7421 proteins in 835 species: Archae - 58; Bacteria - 4755; Metazoa - 3964; Fungi - 2337; Plants - 320; Viruses - 172; Other Eukaryotes - 5502 (source: NCBI BLink).  protein_id AT3G28980.1p  transcript_id AT3G28980.1  protein_id AT3G28980.1p  transcript_id AT3G28980.1  
At3g28985	chr3:010998027	0.0	W/10998027-10998339	AT3G28985.1  pseudogenic_transcript  pseudo  function Encodes a ECA1 gametogenesis related family protein [pseudogene]  
At3g28990	chr3:011003011	0.0	C/11003011-11003046,11002791-11002896,11002351-11002475	AT3G28990.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55240.1); Has 110 Blast hits to 110 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G28990.1p  transcript_id AT3G28990.1  protein_id AT3G28990.1p  transcript_id AT3G28990.1  
At3g29000	chr3:011005791	0.0	W/11005791-11006375	AT3G29000.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function calcium ion binding|GO:0005509||IEA  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), S100/CaBP-9k-type, calcium binding (InterPro:IPR001751), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT5G39670.1); Has 10843 Blast hits to 7320 proteins in 950 species: Archae - 0; Bacteria - 573; Metazoa - 4336; Fungi - 1923; Plants - 1633; Viruses - 68; Other Eukaryotes - 2310 (source: NCBI BLink).  protein_id AT3G29000.1p  transcript_id AT3G29000.1  protein_id AT3G29000.1p  transcript_id AT3G29000.1  
At3g29010	chr3:011006945	0.0	W/11006945-11007123,11007206-11007444,11007531-11007679,11007756-11007977	AT3G29010.1  CDS  go_process protein modification process|GO:0006464||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  product catalytic  note catalytic; FUNCTIONS IN: catalytic activity; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Biotin/lipoate A/B protein ligase (InterPro:IPR004143); Has 614 Blast hits to 614 proteins in 283 species: Archae - 6; Bacteria - 514; Metazoa - 5; Fungi - 19; Plants - 15; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT3G29010.1p  transcript_id AT3G29010.1  protein_id AT3G29010.1p  transcript_id AT3G29010.1  
At3g29020	chr3:011009116	0.0	C/11009116-11009413,11008614-11009017	AT3G29020.1  CDS  gene_syn AtMYB110, MYB110, myb domain protein 110  gene MYB110  function Encodes a putative transcription factor (MYB110).  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product MYB110 (myb domain protein 110); DNA binding / transcription factor  note myb domain protein 110 (MYB110); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB105 (myb domain protein 105); DNA binding / transcription factor (TAIR:AT1G69560.1); Has 5981 Blast hits to 5343 proteins in 368 species: Archae - 0; Bacteria - 0; Metazoa - 687; Fungi - 331; Plants - 3235; Viruses - 5; Other Eukaryotes - 1723 (source: NCBI BLink).  protein_id AT3G29020.1p  transcript_id AT3G29020.1  protein_id AT3G29020.1p  transcript_id AT3G29020.1  
At3g29020	chr3:011009116	0.0	C/11009116-11009419,11008730-11009017,11008233-11008558	AT3G29020.2  CDS  gene_syn AtMYB110, MYB110, myb domain protein 110  gene MYB110  function Encodes a putative transcription factor (MYB110).  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product MYB110 (myb domain protein 110); DNA binding / transcription factor  note myb domain protein 110 (MYB110); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb transcription factor (InterPro:IPR015495), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: MYB105 (myb domain protein 105); DNA binding / transcription factor (TAIR:AT1G69560.1); Has 5710 Blast hits to 5348 proteins in 368 species: Archae - 0; Bacteria - 0; Metazoa - 556; Fungi - 325; Plants - 3194; Viruses - 3; Other Eukaryotes - 1632 (source: NCBI BLink).  protein_id AT3G29020.2p  transcript_id AT3G29020.2  protein_id AT3G29020.2p  transcript_id AT3G29020.2  
At3g29030	chr3:011012903	0.0	C/11012903-11013068,11012259-11012550,11011538-11011847	AT3G29030.1  CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN 5, ARABIDOPSIS THALIANA EXPANSIN A5, ATEXP5, ATEXPA5, ATHEXP ALPHA 1.4, EXP5, EXPA5, EXPANSIN 5, EXPANSIN A5  gene EXPA5  function Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828||ISS  go_process plant-type cell wall modification during multidimensional cell growth|GO:0009831|7568110|ISS  product EXPA5 (EXPANSIN A5)  note EXPANSIN A5 (EXPA5); INVOLVED IN: plant-type cell wall modification during multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15) (TAIR:AT2G03090.1); Has 1448 Blast hits to 1447 proteins in 130 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 33; Plants - 1374; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT3G29030.1p  transcript_id AT3G29030.1  protein_id AT3G29030.1p  transcript_id AT3G29030.1  
At3g29032	chr3:011016131	0.0	W/11016131-11020822	AT3G29032.1  mRNA_TE_gene  pseudo  gene_syn K5K13.17  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to GB:AAC02672 polyprotein (Ty1_Copia-element) (Arabidopsis arenosa)  
At3g29033	chr3:011024007	0.0	W/11024007-11024044,11024246-11024535,11024632-11024792,11024875-11024889	AT3G29033.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT1G44085.1); Has 240 Blast hits to 203 proteins in 59 species: Archae - 0; Bacteria - 12; Metazoa - 117; Fungi - 43; Plants - 49; Viruses - 2; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT3G29033.1p  transcript_id AT3G29033.1  protein_id AT3G29033.1p  transcript_id AT3G29033.1  
At3g29037	chr3:011027795	0.0	C/11027795-11028197	AT3G29037.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G35760; beta-galactosidase  
At3g29036	chr3:011028475	0.0	C/11028475-11028585	AT3G29036.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G29036.1p  transcript_id AT3G29036.1  protein_id AT3G29036.1p  transcript_id AT3G29036.1  
At3g29034	chr3:011030343	0.0	C/11030343-11030603	AT3G29034.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G29034.1p  transcript_id AT3G29034.1  protein_id AT3G29034.1p  transcript_id AT3G29034.1  
At3g29035	chr3:011033839	0.0	W/11033839-11034049,11034129-11034406,11034539-11035006	AT3G29035.1  CDS  gene_syn ANAC059, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 3, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 59, ATNAC3  gene ATNAC3  function Encodes a protein with transcription factor activity. Note: this protein (AT3G29035) on occasion has also been referred to as AtNAC3, not to be confused with the AtNAC3 found at locus AT3G15500.  go_component nucleus|GO:0005634|16581911|IDA  go_process multicellular organismal development|GO:0007275||ISS  go_process response to salt stress|GO:0009651|16359384|IEP  go_process response to ethylene stimulus|GO:0009723|16359384|IEP  go_process response to auxin stimulus|GO:0009733|16359384|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|16359384|IPI  go_function transcription factor activity|GO:0003700|16359384|ISS  go_function protein heterodimerization activity|GO:0046982|16359384|IPI  product ATNAC3 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 3); protein heterodimerization/ transcription factor  note ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 3 (ATNAC3); FUNCTIONS IN: transcription factor activity, protein heterodimerization activity; INVOLVED IN: response to ethylene stimulus, multicellular organismal development, response to auxin stimulus, response to salt stress; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ATNAC6 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 6); protein heterodimerization/ protein homodimerization/ transcription factor (TAIR:AT5G39610.1); Has 1617 Blast hits to 1615 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1617; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G29035.1p  transcript_id AT3G29035.1  protein_id AT3G29035.1p  transcript_id AT3G29035.1  
At3g29040	chr3:011037461	0.0	W/11037461-11037787,11038000-11038440	AT3G29040.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine kinase activity|GO:0004674||ISS  product protein serine/threonine kinase  note protein serine/threonine kinase; FUNCTIONS IN: protein serine/threonine kinase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase-related (TAIR:AT3G21970.1); Has 840 Blast hits to 825 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 840; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G29040.1p  transcript_id AT3G29040.1  protein_id AT3G29040.1p  transcript_id AT3G29040.1  
At3g29050	chr3:011040491	0.0	C/11040491-11040701,11040174-11040252,11039509-11039941	AT3G29050.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product receptor-like protein kinase-related  note receptor-like protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: pollen coat receptor kinase, putative (TAIR:AT3G21920.1); Has 420 Blast hits to 417 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 420; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G29050.1p  transcript_id AT3G29050.1  protein_id AT3G29050.1p  transcript_id AT3G29050.1  
At3g29060	chr3:011047772	0.0	C/11047772-11048465,11047439-11047697,11047322-11047370,11047168-11047239,11046964-11047093,11046765-11046885,11046360-11046618,11046165-11046269,11046046-11046090,11045809-11045961,11045422-11045700,11045182-11045321,11044990-11045086	AT3G29060.1  CDS  go_component integral to membrane|GO:0016021||IEA  go_component integral to membrane|GO:0016021||ISS  product unknown protein  note LOCATED IN: integral to membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: EXS, C-terminal (InterPro:IPR004342), SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14040.1); Has 970 Blast hits to 889 proteins in 159 species: Archae - 2; Bacteria - 5; Metazoa - 379; Fungi - 260; Plants - 176; Viruses - 28; Other Eukaryotes - 120 (source: NCBI BLink).  protein_id AT3G29060.1p  transcript_id AT3G29060.1  protein_id AT3G29060.1p  transcript_id AT3G29060.1  
At3g29070	chr3:011050193	0.0	W/11050193-11050438,11050521-11050730,11050860-11050936,11051009-11051153	AT3G29070.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_process intracellular protein transport|GO:0006886||ISS  go_function protein transmembrane transporter activity|GO:0008320||ISS  product protein transmembrane transporter  note protein transmembrane transporter; FUNCTIONS IN: protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: mitochondrion, integral to membrane, membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family protein (TAIR:AT1G26690.1); Has 951 Blast hits to 949 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 480; Fungi - 267; Plants - 124; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT3G29070.1p  transcript_id AT3G29070.1  protein_id AT3G29070.1p  transcript_id AT3G29070.1  
At3g29075	chr3:011052183	0.0	C/11052183-11052629,11051645-11052082	AT3G29075.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11440.1); Has 101257 Blast hits to 35557 proteins in 1171 species: Archae - 141; Bacteria - 8540; Metazoa - 34827; Fungi - 8697; Plants - 4163; Viruses - 767; Other Eukaryotes - 44122 (source: NCBI BLink).  protein_id AT3G29075.1p  transcript_id AT3G29075.1  protein_id AT3G29075.1p  transcript_id AT3G29075.1  
At3g29076	chr3:011056624	0.0	C/11056624-11061530	AT3G29076.1  mRNA_TE_gene  pseudo  gene_syn MXE2.2  note Transposable element gene, gypsy-like retrotransposon family, has a 9.1e-318 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At3g29077	chr3:011063493	0.0	W/11063493-11063884	AT3G29077.1  pseudogenic_transcript  pseudo  function Pseudogene of AT3G26880; self-incompatibility protein-related  
At3g29078	chr3:011065643	0.0	C/11065643-11069288	AT3G29078.1  mRNA_TE_gene  pseudo  gene_syn MXE2.3  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 5.3e-30 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)  
At3g29080	chr3:011069352	0.0	W/11069352-11069495,11069629-11069990,11070102-11070204,11070474-11070562,11070642-11070772,11070818-11070864,11070915-11071376	AT3G29080.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G29080.1p  transcript_id AT3G29080.1  protein_id AT3G29080.1p  transcript_id AT3G29080.1  
At3g29090	chr3:011073804	0.0	W/11073804-11074049,11074119-11074223,11074434-11074511,11074654-11074841,11074916-11075089,11075173-11075335	AT3G29090.1  CDS  gene_syn A. THALIANA PECTIN METHYLESTERASE 31, ATPME31, PECTIN METHYLESTERASE 31, PME31  gene PME31  function Encodes an atypical pectin methylesterase that does not require salt for its activity and has a blockwise mode of pectin demethylesterification.  go_component cell wall|GO:0005618||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_process pectin metabolic process|GO:0045488|18936961|IDA  go_function pectinesterase activity|GO:0030599|18936961|IDA  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT5G19730.1); Has 1302 Blast hits to 1274 proteins in 216 species: Archae - 2; Bacteria - 331; Metazoa - 1; Fungi - 130; Plants - 836; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G29090.1p  transcript_id AT3G29090.1  protein_id AT3G29090.1p  transcript_id AT3G29090.1  
At3g29095	chr3:011075578	0.0	W/11075578-11075649	AT3G29095.1  tRNA  gene_syn 60470.TRNA-PRO-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: AGG)  transcript_id AT3G29095.1  
At3g29100	chr3:011076318	0.0	C/11076318-11076581,11075916-11076239	AT3G29100.1  CDS  gene_syn ATVTI13, VTI13  gene VTI13  function Encodes a member of the Arabidopsis v-SNARE (vesicle soluble NSF attachment protein receptor) family that has 3 members: VTI11, VTI12, and VTI13. This gene is not expressed at levels detectable by RT-PCR. However, one EST corresponding to this gene has been isolated.  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process intra-Golgi vesicle-mediated transport|GO:0006891|11115874|TAS  go_process membrane fusion|GO:0006944|10831610|IPI  go_function SNARE binding|GO:0000149|11115874|TAS  go_function receptor activity|GO:0004872|11115874|TAS  product VTI13; SNARE binding / receptor  note VTI13; FUNCTIONS IN: SNARE binding, receptor activity; INVOLVED IN: membrane fusion, intra-Golgi vesicle-mediated transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Vesicle transport v-SNARE (InterPro:IPR007705); BEST Arabidopsis thaliana protein match is: SGR4 (SHOOT GRAVITROPSIM 4); receptor (TAIR:AT5G39510.1); Has 508 Blast hits to 506 proteins in 141 species: Archae - 2; Bacteria - 0; Metazoa - 229; Fungi - 94; Plants - 90; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT3G29100.1p  transcript_id AT3G29100.1  protein_id AT3G29100.1p  transcript_id AT3G29100.1  
At3g29105	chr3:011081010	0.0	W/11081010-11081545	AT3G29105.1  pseudogenic_transcript  pseudo  gene_syn MXE2.8  note pseudogene, nonspecific lipid transfer protein, similar to nonspecific lipid transfer protein GB:AAB47967 (Hordeum vulgare); blastp match of 44% identity and 8.4e-18 P-value to SP|Q43681|NLTP_VIGUN Probable nonspecific lipid-transfer protein AKCS9 precursor (LTP). (Cowpea) {Vigna unguiculata}  
At3g29110	chr3:011085739	0.0	C/11085739-11085891,11085378-11085654,11084865-11085243,11084570-11084791,11084354-11084495,11083352-11083600,11082155-11082442	AT3G29110.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function lyase activity|GO:0016829||IEA  product terpene synthase/cyclase family protein  note terpene synthase/cyclase family protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; EXPRESSED IN: sperm cell, root; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase/cyclase family protein (TAIR:AT4G20210.1); Has 1057 Blast hits to 1049 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1054; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G29110.1p  transcript_id AT3G29110.1  protein_id AT3G29110.1p  transcript_id AT3G29110.1  
At3g29120	chr3:011098505	0.0	W/11098505-11099198	AT3G29120.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 5.8e-98 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At3g29130	chr3:011103191	0.0	C/11103191-11103294,11102723-11102875,11102546-11102648	AT3G29130.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 109 Blast hits to 109 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 88; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G29130.1p  transcript_id AT3G29130.1  protein_id AT3G29130.1p  transcript_id AT3G29130.1  
At3g29140	chr3:011105805	0.0	W/11105805-11106007,11106051-11106144	AT3G29140.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, sperm cell; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G29140.1p  transcript_id AT3G29140.1  protein_id AT3G29140.1p  transcript_id AT3G29140.1  
At3g29150	chr3:011108313	0.0	C/11108313-11109194	AT3G29150.1  pseudogenic_transcript  pseudo  function pseudogene of F-box family protein  
At3g29152	chr3:011114112	0.0	C/11114112-11114426	AT3G29152.1  CDS  function Encodes a Protease inhibitor/seed storage/LTP family protein  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  product unknown protein  note INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT5G38170.1); Has 124 Blast hits to 124 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G29152.1p  transcript_id AT3G29152.1  protein_id AT3G29152.1p  transcript_id AT3G29152.1  
At3g29153	chr3:011116077	0.0	C/11116077-11120577	AT3G29153.1  mRNA_TE_gene  pseudo  gene_syn MXE2.14  note Transposable element gene, copia-like retrotransposon family, has a 5.3e-238 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)  
At3g29156	chr3:011122868	0.0	C/11122868-11127592	AT3G29156.1  mRNA_TE_gene  pseudo  gene_syn MXE2.15  note Transposable element gene, copia-like retrotransposon family, has a 2.9e-175 P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At3g29160	chr3:011131318	0.0	C/11131318-11131510,11131004-11131188,11130727-11130909,11130500-11130631,11130217-11130402,11130052-11130141,11129883-11129966,11129659-11129799,11129292-11129522,11128893-11129006	AT3G29160.1  CDS  gene_syn AKIN11, Arabidopsis SNF1 kinase homolog 11, SNF1-RELATED PROTEIN KINASE, SNF1-RELATED PROTEIN KINASE 1.2, SnRK1.2  gene AKIN11  function encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1. It has also been shown to interact with the WD protein PDL1.  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468|10220464|IDA  go_process protein amino acid autophosphorylation|GO:0046777|10220464|IDA  go_function protein kinase activity|GO:0004672|10220464|IDA  go_function protein kinase activity|GO:0004672||ISS  go_function protein binding|GO:0005515|10220464|IPI  product AKIN11 (Arabidopsis SNF1 kinase homolog 11); protein binding / protein kinase  note Arabidopsis SNF1 kinase homolog 11 (AKIN11); FUNCTIONS IN: protein binding, protein kinase activity; INVOLVED IN: protein amino acid autophosphorylation, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Protein kinase, ATP binding site (InterPro:IPR017441), Kinase-associated KA1 (InterPro:IPR001772), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Snf1-like protein AMPK (InterPro:IPR015741), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: AKIN10 (Arabidopsis SNF1 kinase homolog 10); protein binding / protein kinase (TAIR:AT3G01090.3); Has 96840 Blast hits to 95119 proteins in 3340 species: Archae - 76; Bacteria - 8498; Metazoa - 42112; Fungi - 8757; Plants - 18361; Viruses - 483; Other Eukaryotes - 18553 (source: NCBI BLink).  protein_id AT3G29160.1p  transcript_id AT3G29160.1  protein_id AT3G29160.1p  transcript_id AT3G29160.1  
At3g29160	chr3:011131318	0.0	C/11131318-11131510,11131004-11131188,11130727-11130909,11130500-11130631,11130217-11130402,11130052-11130141,11129883-11129966,11129659-11129799,11129292-11129522,11128893-11129006	AT3G29160.2  CDS  gene_syn AKIN11, Arabidopsis SNF1 kinase homolog 11, SNF1-RELATED PROTEIN KINASE, SNF1-RELATED PROTEIN KINASE 1.2, SnRK1.2  gene AKIN11  function encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1. It has also been shown to interact with the WD protein PDL1.  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468|10220464|IDA  go_process protein amino acid autophosphorylation|GO:0046777|10220464|IDA  go_function protein kinase activity|GO:0004672|10220464|IDA  go_function protein kinase activity|GO:0004672||ISS  go_function protein binding|GO:0005515|10220464|IPI  product AKIN11 (Arabidopsis SNF1 kinase homolog 11); protein binding / protein kinase  note Arabidopsis SNF1 kinase homolog 11 (AKIN11); FUNCTIONS IN: protein binding, protein kinase activity; INVOLVED IN: protein amino acid autophosphorylation, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Kinase-associated KA1 (InterPro:IPR001772), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Snf1-like protein AMPK (InterPro:IPR015741), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: AKIN10 (Arabidopsis SNF1 kinase homolog 10); protein binding / protein kinase (TAIR:AT3G01090.3); Has 96840 Blast hits to 95119 proteins in 3340 species: Archae - 76; Bacteria - 8498; Metazoa - 42112; Fungi - 8757; Plants - 18361; Viruses - 483; Other Eukaryotes - 18553 (source: NCBI BLink).  protein_id AT3G29160.2p  transcript_id AT3G29160.2  protein_id AT3G29160.2p  transcript_id AT3G29160.2  
At3g29160	chr3:011131318	0.0	C/11131318-11131510,11131004-11131188,11130727-11130909,11130500-11130631,11130217-11130402,11130052-11130141,11129883-11129966,11129768-11129794	AT3G29160.3  CDS  gene_syn AKIN11, Arabidopsis SNF1 kinase homolog 11, SNF1-RELATED PROTEIN KINASE, SNF1-RELATED PROTEIN KINASE 1.2, SnRK1.2  gene AKIN11  function encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1. It has also been shown to interact with the WD protein PDL1.  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468|10220464|IDA  go_process protein amino acid autophosphorylation|GO:0046777|10220464|IDA  go_function protein kinase activity|GO:0004672|10220464|IDA  go_function protein kinase activity|GO:0004672||ISS  go_function protein binding|GO:0005515|10220464|IPI  product AKIN11 (Arabidopsis SNF1 kinase homolog 11); protein binding / protein kinase  note Arabidopsis SNF1 kinase homolog 11 (AKIN11); FUNCTIONS IN: protein binding, protein kinase activity; INVOLVED IN: protein amino acid autophosphorylation, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Snf1-like protein AMPK (InterPro:IPR015741), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: AKIN10 (Arabidopsis SNF1 kinase homolog 10); protein binding / protein kinase (TAIR:AT3G01090.3); Has 96808 Blast hits to 95103 proteins in 3339 species: Archae - 76; Bacteria - 8498; Metazoa - 42096; Fungi - 8755; Plants - 18355; Viruses - 483; Other Eukaryotes - 18545 (source: NCBI BLink).  protein_id AT3G29160.3p  transcript_id AT3G29160.3  protein_id AT3G29160.3p  transcript_id AT3G29160.3  
At3g29170	chr3:011137257	0.0	C/11137257-11137542,11136240-11136319	AT3G29170.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0414 (InterPro:IPR008590); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19350.1); Has 167 Blast hits to 167 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 114; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G29170.1p  transcript_id AT3G29170.1  protein_id AT3G29170.1p  transcript_id AT3G29170.1  
At3g29175	chr3:011142520	0.0	C/11142520-11147668	AT3G29175.1  mRNA_TE_gene  pseudo  gene_syn MUO22.1  note Transposable element gene, Mutator-like transposase family, has a 3.8e-22 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At3g29180	chr3:011149073	0.0	W/11149073-11149223,11149321-11149404,11149536-11150106,11150187-11150349,11150489-11150617,11150712-11150906,11150986-11151108,11151197-11151322	AT3G29180.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39430.1); Has 151 Blast hits to 151 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT3G29180.1p  transcript_id AT3G29180.1  protein_id AT3G29180.1p  transcript_id AT3G29180.1  
At3g29185	chr3:011156974	0.0	C/11156974-11157207,11156794-11156888,11155954-11156304,11155686-11155872,11155468-11155611,11155265-11155382,11155092-11155198	AT3G29185.2  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 38 Blast hits to 38 proteins in 17 species: Archae - 0; Bacteria - 23; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G29185.2p  transcript_id AT3G29185.2  protein_id AT3G29185.2p  transcript_id AT3G29185.2  
At3g29185	chr3:011156974	0.0	C/11156974-11157207,11156794-11156888,11156184-11156304,11155954-11156072,11155686-11155872,11155468-11155611,11155092-11155382	AT3G29185.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 58 Blast hits to 58 proteins in 28 species: Archae - 0; Bacteria - 43; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G29185.1p  transcript_id AT3G29185.1  protein_id AT3G29185.1p  transcript_id AT3G29185.1  
At3g29187	chr3:011157910	0.0	C/11157910-11158916	AT3G29187.1  mRNA_TE_gene  pseudo  gene_syn MXO21.2  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 9.2e-08 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)  
At3g29190	chr3:011163094	0.0	C/11163094-11163336,11162290-11162566,11161691-11162069,11161392-11161613,11161151-11161292,11159772-11160020,11159373-11159666	AT3G29190.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function lyase activity|GO:0016829||IEA  product lyase/ magnesium ion binding  note lyase/ magnesium ion binding; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase/cyclase family protein (TAIR:AT4G20200.1); Has 1028 Blast hits to 1018 proteins in 138 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1023; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G29190.1p  transcript_id AT3G29190.1  protein_id AT3G29190.1p  transcript_id AT3G29190.1  
At3g29195	chr3:011163557	0.0	C/11163557-11163724	AT3G29195.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G29195.1p  transcript_id AT3G29195.1  protein_id AT3G29195.1p  transcript_id AT3G29195.1  
At3g29200	chr3:011166044	0.0	C/11166044-11166258,11165621-11165846,11165463-11165549,11165147-11165290,11164934-11165026,11164582-11164839	AT3G29200.1  CDS  gene_syn ARABIDOPSIS THALIANA CHORISMATE MUTASE 1, ATCM1, CHORISMATE MUTASE 1, CM1  gene CM1  function L-ascorbate peroxidase  go_component cytosol|GO:0005829|9291097|TAS  go_component plastid|GO:0009536|8224252|TAS  go_process aromatic amino acid family biosynthetic process|GO:0009073|8224252|TAS  go_function chorismate mutase activity|GO:0004106|8224252|IGI  go_function L-ascorbate peroxidase activity|GO:0016688|9291097|ISS  product CM1 (CHORISMATE MUTASE 1); L-ascorbate peroxidase/ chorismate mutase  note CHORISMATE MUTASE 1 (CM1); FUNCTIONS IN: L-ascorbate peroxidase activity, chorismate mutase activity; INVOLVED IN: aromatic amino acid family biosynthetic process; LOCATED IN: cytosol, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chorismate mutase of the AroQ class, eukaryotic type (InterPro:IPR008238), Chorismate mutase (InterPro:IPR002701); BEST Arabidopsis thaliana protein match is: CM3 (chorismate mutase 3); chorismate mutase (TAIR:AT1G69370.1); Has 176 Blast hits to 176 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 98; Plants - 71; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT3G29200.1p  transcript_id AT3G29200.1  protein_id AT3G29200.1p  transcript_id AT3G29200.1  
At3g29205	chr3:011170646	0.0	C/11170646-11175547	AT3G29205.1  mRNA_TE_gene  pseudo  gene_syn MXO21.5  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.2e-28 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At3g29210	chr3:011177290	0.0	W/11177290-11179972	AT3G29210.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G47260.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G14130.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G44500.1); similar to hypothetical protein 26.t00072 [Brassica oleracea] (GB:ABD65017.1)  
At3g29220	chr3:011185678	0.0	W/11185678-11186271	AT3G29220.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30843.1); similar to unknown [Lycopersicon esculentum] (GB:AAK84482.1)  
At3g29225	chr3:011186825	0.0	W/11186825-11188002	AT3G29225.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 9.2e-15 P-value blast match to GB:CAA30503 pol polypeptide (Ty1_Copia-element) (Drosophila melanogaster)  
At3g29230	chr3:011188803	0.0	W/11188803-11190605	AT3G29230.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G08070.1); Has 15379 Blast hits to 5335 proteins in 184 species: Archae - 0; Bacteria - 2; Metazoa - 159; Fungi - 95; Plants - 14731; Viruses - 0; Other Eukaryotes - 392 (source: NCBI BLink).  protein_id AT3G29230.1p  transcript_id AT3G29230.1  protein_id AT3G29230.1p  transcript_id AT3G29230.1  
At3g29240	chr3:011191780	0.0	W/11191780-11191924,11192060-11192868	AT3G29240.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF179 (InterPro:IPR003774); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G33780.1); Has 633 Blast hits to 633 proteins in 194 species: Archae - 0; Bacteria - 372; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink).  protein_id AT3G29240.1p  transcript_id AT3G29240.1  protein_id AT3G29240.1p  transcript_id AT3G29240.1  
At3g29240	chr3:011191780	0.0	W/11191780-11191924,11192060-11192868	AT3G29240.2  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF179 (InterPro:IPR003774); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G33780.1); Has 633 Blast hits to 633 proteins in 194 species: Archae - 0; Bacteria - 372; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink).  protein_id AT3G29240.2p  transcript_id AT3G29240.2  protein_id AT3G29240.2p  transcript_id AT3G29240.2  
At3g29250	chr3:011194821	0.0	C/11194821-11194948,11193767-11194535	AT3G29250.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function copper ion binding|GO:0005507|16526091|IDA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product copper ion binding / oxidoreductase  note copper ion binding / oxidoreductase; FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT3G29260.1); Has 78893 Blast hits to 78743 proteins in 2201 species: Archae - 450; Bacteria - 43823; Metazoa - 4149; Fungi - 4257; Plants - 1479; Viruses - 4; Other Eukaryotes - 24731 (source: NCBI BLink).  protein_id AT3G29250.1p  transcript_id AT3G29250.1  protein_id AT3G29250.1p  transcript_id AT3G29250.1  
At3g29250	chr3:011194827	0.0	C/11194827-11194840,11193767-11194535	AT3G29250.2  CDS  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product oxidoreductase  note oxidoreductase; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT3G29260.1); Has 78984 Blast hits to 78833 proteins in 2198 species: Archae - 452; Bacteria - 43867; Metazoa - 4198; Fungi - 4254; Plants - 1473; Viruses - 7; Other Eukaryotes - 24733 (source: NCBI BLink).  protein_id AT3G29250.2p  transcript_id AT3G29250.2  protein_id AT3G29250.2p  transcript_id AT3G29250.2  
At3g29252	chr3:011198726	0.0	C/11198726-11198975	AT3G29252.1  pseudogenic_transcript  pseudo  function  pseudogene of short-chain dehydrogenase/reductase (SDR) family
At3g29255	chr3:011209586	0.0	W/11209586-11209793,11209880-11209918,11210000-11210067,11210814-11211014,11211092-11211176,11211345-11211511,11211607-11211798,11212071-11212184,11212290-11212532,11212599-11212697,11213046-11213102,11213178-11213711,11213796-11213909	AT3G29255.1  CDS  pseudo  function pseudogene of short-chain dehydrogenase/reductase (SDR) family  <11209586 11213909 gene  gene_syn MXO21.12  <11209586 11209793 CDS  go_function catalytic activity|GO:0003824||IEA  go_function intramolecular transferase activity|GO:0016866||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product catalytic/ intramolecular transferase  note catalytic/ intramolecular transferase; FUNCTIONS IN: catalytic activity, intramolecular transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Terpene synthase, conserved site (InterPro:IPR002365), Squalene cyclase (InterPro:IPR018333), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: ATPEN3 (putative pentacyclic triterpene synthase 3); catalytic/ lupeol synthase (TAIR:AT5G36150.1).  protein_id AT3G29255.1p  transcript_id AT3G29255.1  <11209586 11209793 mRNA  protein_id AT3G29255.1p  transcript_id AT3G29255.1  
At3g29260	chr3:011216821	0.0	C/11216821-11216834,11215952-11216717	AT3G29260.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: oxidoreductase (TAIR:AT3G29250.2); Has 81866 Blast hits to 81713 proteins in 2228 species: Archae - 465; Bacteria - 44986; Metazoa - 4660; Fungi - 4443; Plants - 1560; Viruses - 5; Other Eukaryotes - 25747 (source: NCBI BLink).  protein_id AT3G29260.1p  transcript_id AT3G29260.1  protein_id AT3G29260.1p  transcript_id AT3G29260.1  
At3g29265	chr3:011231712	0.0	W/11231712-11232422	AT3G29265.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana] (TAIR:AT5G32482.1); similar to Zinc knuckle containing protein [Brassica oleracea] (GB:ABD64973.1)  
At3g29270	chr3:011235326	0.0	W/11235326-11236117	AT3G29270.1  CDS  go_function ubiquitin-protein ligase activity|GO:0004842|15644464|IDA  product ubiquitin-protein ligase  note ubiquitin-protein ligase; FUNCTIONS IN: ubiquitin-protein ligase activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G69330.1); Has 190 Blast hits to 190 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 97; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G29270.1p  transcript_id AT3G29270.1  protein_id AT3G29270.1p  transcript_id AT3G29270.1  
At3g29270	chr3:011235326	0.0	W/11235326-11236117	AT3G29270.2  CDS  go_function ubiquitin-protein ligase activity|GO:0004842|15644464|IDA  product ubiquitin-protein ligase  note ubiquitin-protein ligase; FUNCTIONS IN: ubiquitin-protein ligase activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G69330.1); Has 190 Blast hits to 190 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 97; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G29270.2p  transcript_id AT3G29270.2  protein_id AT3G29270.2p  transcript_id AT3G29270.2  
At3g29280	chr3:011237944	0.0	C/11237944-11237947,11237705-11237863,11237329-11237402,11237156-11237235,11236864-11237015,11236705-11236772	AT3G29280.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 16 Blast hits to 16 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G29280.1p  transcript_id AT3G29280.1  protein_id AT3G29280.1p  transcript_id AT3G29280.1  
At3g29290	chr3:011238421	0.0	W/11238421-11239872,11239955-11240125	AT3G29290.1  CDS  gene_syn emb2076, embryo defective 2076  gene emb2076  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product emb2076 (embryo defective 2076)  note embryo defective 2076 (emb2076); INVOLVED IN: embryonic development ending in seed dormancy; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G02860.1); Has 15330 Blast hits to 5300 proteins in 159 species: Archae - 2; Bacteria - 16; Metazoa - 228; Fungi - 233; Plants - 14096; Viruses - 0; Other Eukaryotes - 755 (source: NCBI BLink).  protein_id AT3G29290.1p  transcript_id AT3G29290.1  protein_id AT3G29290.1p  transcript_id AT3G29290.1  
At3g29300	chr3:011247011	0.0	W/11247011-11247652	AT3G29300.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; Has 422 Blast hits to 320 proteins in 68 species: Archae - 0; Bacteria - 60; Metazoa - 92; Fungi - 75; Plants - 9; Viruses - 1; Other Eukaryotes - 185 (source: NCBI BLink).  protein_id AT3G29300.1p  transcript_id AT3G29300.1  protein_id AT3G29300.1p  transcript_id AT3G29300.1  
At3g29305	chr3:011249457	0.0	C/11249457-11249491,11249141-11249272,11249010-11249062,11248862-11248921,11248672-11248772	AT3G29305.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G29305.1p  transcript_id AT3G29305.1  protein_id AT3G29305.1p  transcript_id AT3G29305.1  
At3g29310	chr3:011249712	0.0	W/11249712-11250308,11250394-11251452	AT3G29310.1  CDS  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product calmodulin-binding protein-related  note calmodulin-binding protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 892 Blast hits to 787 proteins in 167 species: Archae - 0; Bacteria - 26; Metazoa - 415; Fungi - 85; Plants - 78; Viruses - 14; Other Eukaryotes - 274 (source: NCBI BLink).  protein_id AT3G29310.1p  transcript_id AT3G29310.1  protein_id AT3G29310.1p  transcript_id AT3G29310.1  
At3g29320	chr3:011252871	0.0	W/11252871-11253108,11253233-11253474,11253544-11253645,11253806-11253982,11254104-11254379,11254634-11254905,11255055-11255172,11255251-11255613,11255706-11255858,11255946-11256074,11256210-11256446,11256578-11256654,11256890-11257076,11257166-11257366,11257471-11257587	AT3G29320.1  CDS  gene_syn ATPHS1, MUO10.17  function Encodes a plastidic alpha-glucan phosphorylase. In vitro, the enzyme has a preference for maltooligosaccharides, such as maltoheptaose.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component plastid|GO:0009536|15173560|TAS  go_process response to temperature stimulus|GO:0009266|16913860|IEP  go_process response to water deprivation|GO:0009414|15173560|IMP  go_function phosphorylase activity|GO:0004645|15173560|IMP  go_function phosphorylase activity|GO:0004645||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glucan phosphorylase, putative  note glucan phosphorylase, putative; FUNCTIONS IN: phosphorylase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: response to water deprivation, response to temperature stimulus; LOCATED IN: chloroplast stroma, chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 35 (InterPro:IPR000811), Glycogen/starch/alpha-glucan phosphorylase (InterPro:IPR011833); BEST Arabidopsis thaliana protein match is: PHS2 (ALPHA-GLUCAN PHOSPHORYLASE 2); phosphorylase/ transferase, transferring glycosyl groups (TAIR:AT3G46970.1); Has 4048 Blast hits to 3659 proteins in 978 species: Archae - 77; Bacteria - 2358; Metazoa - 463; Fungi - 104; Plants - 148; Viruses - 2; Other Eukaryotes - 896 (source: NCBI BLink).  protein_id AT3G29320.1p  transcript_id AT3G29320.1  protein_id AT3G29320.1p  transcript_id AT3G29320.1  
At3g29330	chr3:011258757	0.0	C/11258757-11259053,11258030-11258149,11257702-11257983	AT3G29330.1  CDS  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: stem, embryo; EXPRESSED DURING: D bilateral stage; Has 22 Blast hits to 20 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G29330.1p  transcript_id AT3G29330.1  protein_id AT3G29330.1p  transcript_id AT3G29330.1  
At3g29340	chr3:011262225	0.0	C/11262225-11262440,11261384-11262106,11259587-11260600	AT3G29340.1  CDS  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT4G04404.1); Has 34908 Blast hits to 14185 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 33161; Fungi - 33; Plants - 626; Viruses - 0; Other Eukaryotes - 1088 (source: NCBI BLink).  protein_id AT3G29340.1p  transcript_id AT3G29340.1  protein_id AT3G29340.1p  transcript_id AT3G29340.1  
At3g29350	chr3:011265343	0.0	C/11265343-11265408,11264993-11265123,11264841-11264912,11264682-11264757	AT3G29350.2  CDS  gene_syn AHP2, HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2  gene AHP2  function Encodes AHP2, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function in His-to-Asp phosphorelay signal transduction and as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).  go_component nucleus|GO:0005634|17122069|IDA  go_component cytoplasm|GO:0005737|11158442|NAS  go_component cytoplasm|GO:0005737|17122069|IDA  go_process two-component signal transduction system (phosphorelay)|GO:0000160|11158442|IDA  go_process signal transduction|GO:0007165||ISS  go_process cytokinin mediated signaling|GO:0009736|11828030|IMP  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_process cytokinin mediated signaling|GO:0009736|17122069|IGI  go_process cytokinin mediated signaling|GO:0009736|17122069|IMP  go_function signal transducer activity|GO:0004871||ISS  go_function protein binding|GO:0005515|11370868|IPI  go_function histidine phosphotransfer kinase activity|GO:0009927|10050311|IDA  go_function histidine phosphotransfer kinase activity|GO:0009927|11158442|IPI  go_function histidine phosphotransfer kinase activity|GO:0009927|17122069|ISS  go_function histidine phosphotransfer kinase activity|GO:0009927|9804162|IDA  product AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2); histidine phosphotransfer kinase/ protein binding / signal transducer  note HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2 (AHP2); FUNCTIONS IN: protein binding, histidine phosphotransfer kinase activity, signal transducer activity; INVOLVED IN: signal transduction, cytokinin mediated signaling, two-component signal transduction system (phosphorelay); LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, phosphotransfer (Hpt) region (InterPro:IPR008207); BEST Arabidopsis thaliana protein match is: AHP3 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3); histidine phosphotransfer kinase (TAIR:AT5G39340.1); Has 157 Blast hits to 156 proteins in 28 species: Archae - 2; Bacteria - 6; Metazoa - 0; Fungi - 11; Plants - 136; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G29350.2p  transcript_id AT3G29350.2  protein_id AT3G29350.2p  transcript_id AT3G29350.2  
At3g29350	chr3:011265343	0.0	C/11265343-11265408,11264993-11265123,11264841-11264912,11264686-11264757,11264545-11264617,11264379-11264435	AT3G29350.1  CDS  gene_syn AHP2, HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2  gene AHP2  function Encodes AHP2, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function in His-to-Asp phosphorelay signal transduction and as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).  go_component nucleus|GO:0005634|17122069|IDA  go_component cytoplasm|GO:0005737|11158442|NAS  go_component cytoplasm|GO:0005737|17122069|IDA  go_process two-component signal transduction system (phosphorelay)|GO:0000160|11158442|IDA  go_process signal transduction|GO:0007165||ISS  go_process cytokinin mediated signaling|GO:0009736|11828030|IMP  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_process cytokinin mediated signaling|GO:0009736|17122069|IGI  go_process cytokinin mediated signaling|GO:0009736|17122069|IMP  go_function signal transducer activity|GO:0004871||ISS  go_function protein binding|GO:0005515|11370868|IPI  go_function histidine phosphotransfer kinase activity|GO:0009927|10050311|IDA  go_function histidine phosphotransfer kinase activity|GO:0009927|11158442|IPI  go_function histidine phosphotransfer kinase activity|GO:0009927|17122069|ISS  go_function histidine phosphotransfer kinase activity|GO:0009927|9804162|IDA  product AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2); histidine phosphotransfer kinase/ protein binding / signal transducer  note HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2 (AHP2); FUNCTIONS IN: protein binding, histidine phosphotransfer kinase activity, signal transducer activity; INVOLVED IN: signal transduction, cytokinin mediated signaling, two-component signal transduction system (phosphorelay); LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, phosphotransfer (Hpt) region (InterPro:IPR008207); BEST Arabidopsis thaliana protein match is: AHP3 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3); histidine phosphotransfer kinase (TAIR:AT5G39340.1); Has 204 Blast hits to 203 proteins in 49 species: Archae - 2; Bacteria - 44; Metazoa - 0; Fungi - 17; Plants - 138; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G29350.1p  transcript_id AT3G29350.1  protein_id AT3G29350.1p  transcript_id AT3G29350.1  
At3g29360	chr3:011267375	0.0	C/11267375-11268817	AT3G29360.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_function UDP-glucose 6-dehydrogenase activity|GO:0003979||ISS  product UDP-glucose 6-dehydrogenase, putative  note UDP-glucose 6-dehydrogenase, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucose/GDP-mannose dehydrogenase, N-terminal (InterPro:IPR001732), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding (InterPro:IPR014028), UDP-glucose/GDP-mannose dehydrogenase, C-terminal (InterPro:IPR014027), NAD(P)-binding (InterPro:IPR016040), UDP-glucose/GDP-mannose dehydrogenase, dimerisation (InterPro:IPR014026), Nucleotide sugar dehydrogenase (InterPro:IPR017476); BEST Arabidopsis thaliana protein match is: UDP-glucose 6-dehydrogenase, putative (TAIR:AT5G39320.1); Has 10030 Blast hits to 10014 proteins in 1239 species: Archae - 198; Bacteria - 3909; Metazoa - 183; Fungi - 74; Plants - 116; Viruses - 14; Other Eukaryotes - 5536 (source: NCBI BLink).  protein_id AT3G29360.1p  transcript_id AT3G29360.1  protein_id AT3G29360.1p  transcript_id AT3G29360.1  
At3g29360	chr3:011267375	0.0	C/11267375-11268817	AT3G29360.2  CDS  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_function UDP-glucose 6-dehydrogenase activity|GO:0003979||ISS  product UDP-glucose 6-dehydrogenase, putative  note UDP-glucose 6-dehydrogenase, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucose/GDP-mannose dehydrogenase, N-terminal (InterPro:IPR001732), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding (InterPro:IPR014028), UDP-glucose/GDP-mannose dehydrogenase, C-terminal (InterPro:IPR014027), NAD(P)-binding (InterPro:IPR016040), UDP-glucose/GDP-mannose dehydrogenase, dimerisation (InterPro:IPR014026), Nucleotide sugar dehydrogenase (InterPro:IPR017476); BEST Arabidopsis thaliana protein match is: UDP-glucose 6-dehydrogenase, putative (TAIR:AT5G39320.1); Has 10030 Blast hits to 10014 proteins in 1239 species: Archae - 198; Bacteria - 3909; Metazoa - 183; Fungi - 74; Plants - 116; Viruses - 14; Other Eukaryotes - 5536 (source: NCBI BLink).  protein_id AT3G29360.2p  transcript_id AT3G29360.2  protein_id AT3G29360.2p  transcript_id AT3G29360.2  
At3g29365	chr3:011274127	0.0	W/11274127-11274967	AT3G29365.1  pseudogenic_transcript  pseudo  gene_syn ARABIDOPSIS THALIANA EXPANSIN A19, ATEXP19, ATEXPA19, ATHEXP ALPHA 1.21P, EXP19, EXPANSIN 19, MUO10.8  gene ATEXPA19  function member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)  note pseudogene, putative expansin (EXP19), Note: sequencing error makes gene appear to be a pseudogene, see: http://www.bio.psu.edu/expansins; blastp match of 57% identity and 3.7e-66 P-value to GP|20502784|gb|AAM22625.1|AF428178_1|AF428178 expansin 11 precursor {Rumex palustris}  
At3g29370	chr3:011278652	0.0	W/11278652-11278957	AT3G29370.1  CDS  gene_syn MUO10.6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39240.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G29370.1p  transcript_id AT3G29370.1  protein_id AT3G29370.1p  transcript_id AT3G29370.1  
At3g29375	chr3:011280151	0.0	W/11280151-11280261,11280452-11280599,11280772-11280917,11281062-11281220,11281298-11281495,11281584-11281829	AT3G29375.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product XH domain-containing protein  note XH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Region of unknown function XH (InterPro:IPR005379); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein / XS zinc finger domain-containing protein (TAIR:AT1G80790.1); Has 4264 Blast hits to 727 proteins in 156 species: Archae - 0; Bacteria - 69; Metazoa - 238; Fungi - 192; Plants - 142; Viruses - 50; Other Eukaryotes - 3573 (source: NCBI BLink).  protein_id AT3G29375.1p  transcript_id AT3G29375.1  protein_id AT3G29375.1p  transcript_id AT3G29375.1  
At3g29380	chr3:011282684	0.0	C/11282684-11283524,11282407-11282576	AT3G29380.1  CDS  gene_syn MUO10.22  go_component nucleus|GO:0005634||IEA  go_component transcription factor complex|GO:0005667||IEA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function translation initiation factor activity|GO:0003743||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function transcription regulator activity|GO:0030528||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||ISS  product transcription factor IIB (TFIIB) family protein  note transcription factor IIB (TFIIB) family protein; FUNCTIONS IN: protein binding, RNA polymerase II transcription factor activity, transcription regulator activity, zinc ion binding, translation initiation factor activity; INVOLVED IN: response to cadmium ion; LOCATED IN: transcription factor complex, nucleus; EXPRESSED IN: flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Cyclin-like (InterPro:IPR011028), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-related (InterPro:IPR013763), Zinc finger, TFIIB-type (InterPro:IPR013137), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2) (TAIR:AT3G10330.1); Has 1088 Blast hits to 1086 proteins in 246 species: Archae - 325; Bacteria - 0; Metazoa - 165; Fungi - 101; Plants - 75; Viruses - 9; Other Eukaryotes - 413 (source: NCBI BLink).  protein_id AT3G29380.1p  transcript_id AT3G29380.1  protein_id AT3G29380.1p  transcript_id AT3G29380.1  
At3g29385	chr3:011285302	0.0	C/11285302-11285402,11285157-11285205,11284848-11285059,11284669-11284770,11284395-11284587	AT3G29385.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G07980.1); Has 37 Blast hits to 37 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G29385.1p  transcript_id AT3G29385.1  protein_id AT3G29385.1p  transcript_id AT3G29385.1  
At3g29390	chr3:011289675	0.0	W/11289675-11289754,11290279-11290435,11290842-11290943,11291016-11291050,11291130-11291205,11291362-11291484,11291557-11291634,11291895-11291988,11292105-11292222,11292336-11292828,11294033-11294330,11294442-11294524	AT3G29390.1  CDS  gene_syn RIK, RS2-Interacting KH protein  gene RIK  function Nuclear localized K-homology containing protein that interacts with AS1.  go_component nucleus|GO:0005634|16243907|TAS  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723|16243907|TAS  product RIK (RS2-Interacting KH protein); RNA binding  note RS2-Interacting KH protein (RIK); FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; Has 9000 Blast hits to 5389 proteins in 438 species: Archae - 14; Bacteria - 585; Metazoa - 2735; Fungi - 1241; Plants - 2321; Viruses - 566; Other Eukaryotes - 1538 (source: NCBI BLink).  protein_id AT3G29390.1p  transcript_id AT3G29390.1  protein_id AT3G29390.1p  transcript_id AT3G29390.1  
At3g29400	chr3:011297339	0.0	C/11297339-11299315	AT3G29400.1  CDS  gene_syn ATEXO70E1, exocyst subunit EXO70 family protein E1  gene ATEXO70E1  function A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.  go_component exocyst|GO:0000145||IEA  go_process exocytosis|GO:0006887||IEA  go_component exocyst|GO:0000145||ISS  go_process vesicle docking during exocytosis|GO:0006904||ISS  go_function protein binding|GO:0005515||ISS  product ATEXO70E1 (exocyst subunit EXO70 family protein E1); protein binding  note exocyst subunit EXO70 family protein E1 (ATEXO70E1); FUNCTIONS IN: protein binding; INVOLVED IN: exocytosis, vesicle docking during exocytosis; LOCATED IN: exocyst; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: ATEXO70E2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN E2); protein binding (TAIR:AT5G61010.2); Has 555 Blast hits to 552 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 62; Plants - 365; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT3G29400.1p  transcript_id AT3G29400.1  protein_id AT3G29400.1p  transcript_id AT3G29400.1  
At3g29410	chr3:011304803	0.0	C/11304803-11305060,11304444-11304717,11303979-11304354,11303683-11303904,11303276-11303414,11302948-11303196,11302574-11302867	AT3G29410.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function lyase activity|GO:0016829||IEA  product terpene synthase/cyclase family protein  note terpene synthase/cyclase family protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; EXPRESSED IN: embryo, flower, root, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase/cyclase family protein (TAIR:AT3G14490.1); Has 1080 Blast hits to 1067 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1077; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G29410.1p  transcript_id AT3G29410.1  protein_id AT3G29410.1p  transcript_id AT3G29410.1  
At3g29420	chr3:011307007	0.0	W/11307007-11307026,11307940-11308078	AT3G29420.1  CDS  gene_syn MUO10.7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product geranylgeranyl pyrophosphate synthase-related / GGPP synthetase-related / farnesyltranstransferase-related  note geranylgeranyl pyrophosphate synthase-related / GGPP synthetase-related / farnesyltranstransferase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: GGPS3 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 3); farnesyltranstransferase (TAIR:AT3G14550.1); Has 115 Blast hits to 115 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G29420.1p  transcript_id AT3G29420.1  protein_id AT3G29420.1p  transcript_id AT3G29420.1  
At3g29430	chr3:011311427	0.0	W/11311427-11311909,11312014-11312604	AT3G29430.1  CDS  gene_syn MUO10.10  go_process isoprenoid biosynthetic process|GO:0008299||IEA  product geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative  note geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative; INVOLVED IN: isoprenoid biosynthetic process; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative (TAIR:AT3G32040.1); Has 11720 Blast hits to 11716 proteins in 1680 species: Archae - 213; Bacteria - 4928; Metazoa - 277; Fungi - 301; Plants - 280; Viruses - 6; Other Eukaryotes - 5715 (source: NCBI BLink).  protein_id AT3G29430.1p  transcript_id AT3G29430.1  protein_id AT3G29430.1p  transcript_id AT3G29430.1  
At3g29431	chr3:011313003	0.0	C/11313003-11313140	AT3G29431.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G29431.1p  transcript_id AT3G29431.1  protein_id AT3G29431.1p  transcript_id AT3G29431.1  
At3g29440	chr3:011321695	0.0	C/11321695-11322100	AT3G29440.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 6.9e-10 P-value blast match to GB:AAC24836 pol polyprotein (Ty1_Copia-element) (Candida albicans)  
At3g29450	chr3:011322669	0.0	W/11322669-11322787,11322967-11323118,11323218-11323510,11323578-11324582	AT3G29450.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: hAT dimerisation domain-containing protein (TAIR:AT1G19260.1); Has 263 Blast hits to 248 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 149; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G29450.1p  transcript_id AT3G29450.1  protein_id AT3G29450.1p  transcript_id AT3G29450.1  
At3g29460	chr3:011324941	0.0	C/11324941-11326338	AT3G29460.1  mRNA_TE_gene  pseudo  gene_syn MUO10.20  note Transposable element gene, copia-like retrotransposon family, has a 4.0e-34 P-value blast match to GB:BAA11674 ORF(AA 1-1338) (Ty1_Copia-element) (Nicotiana tabacum)  
At3g29470	chr3:011326620	0.0	C/11326620-11327360	AT3G29470.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G04135.1); similar to Integrase, catalytic re (GB:ABE86211.1)  
At3g29480	chr3:011329729	0.0	W/11329729-11333533	AT3G29480.1  mRNA_TE_gene  pseudo  gene_syn T13B17.100  note Transposable element gene, gypsy-like retrotransposon family, has a 4.3e-232 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At3g29510	chr3:011336745	0.0	W/11336745-11341397	AT3G29510.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.6e-122 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)  
At3g29515	chr3:011341766	0.0	C/11341766-11346095	AT3G29515.1  mRNA_TE_gene  pseudo  gene_syn T13B17.4  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.6e-11 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)  
At3g29520	chr3:011351105	0.0	C/11351105-11351578	AT3G29520.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At3g29525	chr3:011353722	0.0	C/11353722-11354141	AT3G29525.1  mRNA_TE_gene  pseudo  gene_syn T13B17.7  note Transposable element gene, copia-like retrotransposon family, has a 9.0e-22 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At3g29540	chr3:011354327	0.0	W/11354327-11354735	AT3G29540.1  mRNA_TE_gene  pseudo  gene_syn T13B17.8  note Transposable element gene, copia-like retrotransposon family, has a 6.4e-26 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At3g29545	chr3:011355482	0.0	C/11355482-11355629	AT3G29545.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At3g29550	chr3:011355655	0.0	W/11355655-11356974	AT3G29550.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 5.7e-22 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At3g29560	chr3:011360152	0.0	C/11360152-11360208,11359946-11360079,11359691-11359762,11359512-11359611	AT3G29560.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G29560.1p  transcript_id AT3G29560.1  protein_id AT3G29560.1p  transcript_id AT3G29560.1  
At3g29570	chr3:011363806	0.0	C/11363806-11364789	AT3G29570.1  CDS  product unknown protein  note unknown protein; Has 230 Blast hits to 136 proteins in 49 species: Archae - 0; Bacteria - 12; Metazoa - 76; Fungi - 41; Plants - 27; Viruses - 9; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT3G29570.1p  transcript_id AT3G29570.1  protein_id AT3G29570.1p  transcript_id AT3G29570.1  
At3g29572	chr3:011371117	0.0	C/11371117-11372459	AT3G29572.1  mRNA_TE_gene  pseudo  gene_syn MWE13.3  note Transposable element gene, pseudogene, hypothetical protein  
At3g29575	chr3:011383267	0.0	C/11383267-11383657,11382416-11382720	AT3G29575.1  CDS  gene_syn ABI FIVE BINDING PROTEIN 3, AFP3  gene AFP3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product AFP3 (ABI FIVE BINDING PROTEIN 3)  note ABI FIVE BINDING PROTEIN 3 (AFP3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1675 (InterPro:IPR012463); BEST Arabidopsis thaliana protein match is: TMAC2 (TWO OR MORE ABRES-CONTAINING GENE 2) (TAIR:AT3G02140.1); Has 97 Blast hits to 94 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G29575.1p  transcript_id AT3G29575.1  protein_id AT3G29575.1p  transcript_id AT3G29575.1  
At3g29575	chr3:011383267	0.0	C/11383267-11383657,11382416-11382720	AT3G29575.3  CDS  gene_syn ABI FIVE BINDING PROTEIN 3, AFP3  gene AFP3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product AFP3 (ABI FIVE BINDING PROTEIN 3)  note ABI FIVE BINDING PROTEIN 3 (AFP3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1675 (InterPro:IPR012463); BEST Arabidopsis thaliana protein match is: TMAC2 (TWO OR MORE ABRES-CONTAINING GENE 2) (TAIR:AT3G02140.1); Has 97 Blast hits to 94 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G29575.3p  transcript_id AT3G29575.3  protein_id AT3G29575.3p  transcript_id AT3G29575.3  
At3g29575	chr3:011383267	0.0	C/11383267-11383657,11382416-11382720	AT3G29575.4  CDS  gene_syn ABI FIVE BINDING PROTEIN 3, AFP3  gene AFP3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product AFP3 (ABI FIVE BINDING PROTEIN 3)  note ABI FIVE BINDING PROTEIN 3 (AFP3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1675 (InterPro:IPR012463); BEST Arabidopsis thaliana protein match is: TMAC2 (TWO OR MORE ABRES-CONTAINING GENE 2) (TAIR:AT3G02140.1); Has 97 Blast hits to 94 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G29575.4p  transcript_id AT3G29575.4  protein_id AT3G29575.4p  transcript_id AT3G29575.4  
At3g29577	chr3:011389498	0.0	W/11389498-11391907	AT3G29577.1  mRNA_TE_gene  pseudo  gene_syn MTO24.1  note Transposable element gene, gypsy-like retrotransposon family, has a 4.0e-133 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At3g29578	chr3:011392690	0.0	C/11392690-11393979	AT3G29578.1  mRNA_TE_gene  pseudo  gene_syn MTO24.2  note Transposable element gene, copia-like retrotransposon family, has a 2.1e-48 P-value blast match to GB:CAA37924 orf 2 (Ty1_Copia-element) (Arabidopsis thaliana)  
At3g29580	chr3:011395765	0.0	C/11395765-11395871,11395513-11395679,11395130-11395413,11394675-11395037	AT3G29580.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT3G58210.1); Has 220 Blast hits to 198 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G29580.1p  transcript_id AT3G29580.1  protein_id AT3G29580.1p  transcript_id AT3G29580.1  
At3g29590	chr3:011398917	0.0	C/11398917-11400266	AT3G29590.1  CDS  gene_syn AT5MAT  gene AT5MAT  function At3g29590 (At5MAT) encodes a malonyl-CoA:anthocyanidin 5-O-glucoside-6-O-malonyltransferase that is coordinately expressed with a epistatic 5-O-anthocyanidin glucosyltransferase (At4g14090). The enzyme is involved in the malonylation of anthocyanins in Arabidopsis.  go_component cellular_component|GO:0005575||ND  go_process anthocyanin biosynthetic process|GO:0009718|17292360|IDA  go_function transferase activity|GO:0016740||ISS  go_function O-malonyltransferase activity|GO:0050736|17292360|IDA  product AT5MAT; O-malonyltransferase/ transferase  note AT5MAT; FUNCTIONS IN: O-malonyltransferase activity, transferase activity; INVOLVED IN: anthocyanin biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase/ transferase, transferring acyl groups other than amino-acyl groups (TAIR:AT5G39050.1); Has 1071 Blast hits to 1061 proteins in 103 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 25; Plants - 1046; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G29590.1p  transcript_id AT3G29590.1  protein_id AT3G29590.1p  transcript_id AT3G29590.1  
At3g29595	chr3:011405081	0.0	W/11405081-11406287	AT3G29595.1  mRNA_TE_gene  pseudo  gene_syn MTO24.6  note Transposable element gene, Mutator-like transposase family, has a 3.4e-63 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g29600	chr3:011407409	0.0	C/11407409-11408067	AT3G29600.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G54926.1)  
At3g29610	chr3:011409602	0.0	W/11409602-11410090	AT3G29610.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G31406.1)  
At3g29612	chr3:011410573	0.0	C/11410573-11412365	AT3G29612.1  mRNA_TE_gene  pseudo  gene_syn MTO24.9  note Transposable element gene, pseudogene, hypothetical protein  
At3g29615	chr3:011416487	0.0	W/11416487-11424660	AT3G29615.1  mRNA_TE_gene  pseudo  gene_syn MTO24.12  note Transposable element gene, gypsy-like retrotransposon family, has a 6.2e-313 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At3g29618	chr3:011433299	0.0	W/11433299-11434653	AT3G29618.1  mRNA_TE_gene  pseudo  gene_syn MTO24.13  note Transposable element gene, Mutator-like transposase family, has a 3.5e-16 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g29620	chr3:011444217	0.0	W/11444217-11444885	AT3G29620.1  mRNA_TE_gene  pseudo  note Transposable element gene, transposase IS4 family protein, contains Pfam profile: PF01609 transposase DDE domain  
At3g29630	chr3:011447178	0.0	C/11447178-11448524	AT3G29630.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function transferase activity, transferring hexosyl groups|GO:0016758||IEA  go_component cellular_component|GO:0005575||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyltransferase family protein  note glycosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, hypocotyl, guard cell, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: glycosyltransferase family protein (TAIR:AT1G50580.1); Has 2736 Blast hits to 2712 proteins in 187 species: Archae - 0; Bacteria - 44; Metazoa - 72; Fungi - 6; Plants - 2610; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G29630.1p  transcript_id AT3G29630.1  protein_id AT3G29630.1p  transcript_id AT3G29630.1  
At3g29633	chr3:011452942	0.0	C/11452942-11453037	AT3G29633.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G29633.1p  transcript_id AT3G29633.1  protein_id AT3G29633.1p  transcript_id AT3G29633.1  
At3g29634	chr3:011454659	0.0	C/11454659-11461849	AT3G29634.1  mRNA_TE_gene  pseudo  gene_syn MTO24.20  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 2.3e-159 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At3g29635	chr3:011465851	0.0	C/11465851-11467227	AT3G29635.1  CDS  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT3G29680.1); Has 1121 Blast hits to 1112 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 28; Plants - 1091; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G29635.1p  transcript_id AT3G29635.1  protein_id AT3G29635.1p  transcript_id AT3G29635.1  
At3g29636	chr3:011468620	0.0	C/11468620-11468857,11468393-11468536,11468171-11468306,11467964-11468045	AT3G29636.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product transferase-related  note transferase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT3G29635.1); Has 88 Blast hits to 88 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G29636.1p  transcript_id AT3G29636.1  protein_id AT3G29636.1p  transcript_id AT3G29636.1  
At3g29638	chr3:011473584	0.0	W/11473584-11473794,11473918-11473972,11474135-11474295,11474554-11474829,11474906-11475192,11475311-11475559	AT3G29638.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: hAT dimerisation domain-containing protein / transposase-related (TAIR:AT4G10200.1); Has 156 Blast hits to 129 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 64; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G29638.1p  transcript_id AT3G29638.1  protein_id AT3G29638.1p  transcript_id AT3G29638.1  
At3g29639	chr3:011479672	0.0	C/11479672-11479733,11478732-11479215	AT3G29639.1  CDS  product unknown protein  note CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue C-terminal (InterPro:IPR012921); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT5G11430.1); Has 23 Blast hits to 23 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G29639.1p  transcript_id AT3G29639.1  protein_id AT3G29639.1p  transcript_id AT3G29639.1  
At3g29640	chr3:011488046	0.0	W/11488046-11488561	AT3G29640.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G29632.1); similar to hypothetical protein 26.t00020 [Brassica oleracea] (GB:ABD65000.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057)  
At3g29641	chr3:011490749	0.0	C/11490749-11493971	AT3G29641.1  mRNA_TE_gene  pseudo  gene_syn T13J10.1  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.3e-84 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g29632	chr3:011495187	0.0	W/11495187-11495699	AT3G29632.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G29640.1); similar to hypothetical protein 26.t00020 [Brassica oleracea] (GB:ABD65000.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057)  
At3g29642	chr3:011497888	0.0	W/11497888-11499349	AT3G29642.1  mRNA_TE_gene  pseudo  gene_syn T13J10.10  note Transposable element gene, Mutator-like transposase family, has a 4.7e-20 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At3g29644	chr3:011499199	0.0	C/11499199-11501366	AT3G29644.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT3G29642  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G29644.1  
At3g29644	chr3:011499500	0.0	C/11499500-11500873	AT3G29644.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT3G29642  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G29644.2  
At3g29643	chr3:011504663	0.0	W/11504663-11508363	AT3G29643.1  mRNA_TE_gene  pseudo  gene_syn T13J10.11  note Transposable element gene, pseudogene, similar to putative helicase, blastp match of 40% identity and 6.6e-123 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)}  
At3g29647	chr3:011508519	0.0	W/11508519-11509043	AT3G29647.1  mRNA_TE_gene  pseudo  gene_syn T13J10.8  note Transposable element gene, pseudogene, hypothetical protein  
At3g29648	chr3:011514936	0.0	W/11514936-11517766	AT3G29648.1  mRNA_TE_gene  pseudo  gene_syn MOD1.1  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 2.5e-169 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At3g29650	chr3:011517826	0.0	W/11517826-11521441	AT3G29650.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp1/En/Spm), has a 5.1e-81 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)  
At3g29660	chr3:011522524	0.0	W/11522524-11524021	AT3G29660.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G37120.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G18420.1); contains domain UBC-like (SSF54495)  
At3g29670	chr3:011527952	0.0	W/11527952-11529307	AT3G29670.1  CDS  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, inflorescence meristem, hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT3G29635.1); Has 1126 Blast hits to 1116 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 30; Plants - 1094; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G29670.1p  transcript_id AT3G29670.1  protein_id AT3G29670.1p  transcript_id AT3G29670.1  
At3g29680	chr3:011531449	0.0	C/11531449-11532804	AT3G29680.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: AACT1 (anthocyanin 5-aromatic acyltransferase 1); transferase/ transferase, transferring acyl groups other than amino-acyl groups (TAIR:AT5G61160.1); Has 889 Blast hits to 879 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 15; Plants - 874; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G29680.1p  transcript_id AT3G29680.1  protein_id AT3G29680.1p  transcript_id AT3G29680.1  
At3g29690	chr3:011541486	0.0	C/11541486-11541549,11540770-11541248	AT3G29690.1  CDS  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product transferase-related  note transferase-related; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT3G29680.1); Has 277 Blast hits to 277 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 275; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G29690.1p  transcript_id AT3G29690.1  protein_id AT3G29690.1p  transcript_id AT3G29690.1  
At3g29695	chr3:011542027	0.0	W/11542027-11544471	AT3G29695.1  mRNA_TE_gene  pseudo  gene_syn MOD1.6  note Transposable element gene, Mutator-like transposase family, has a 3.8e-82 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g29700	chr3:011545357	0.0	W/11545357-11545932	AT3G29700.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G32070.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G23490.1)  
At3g29710	chr3:011546270	0.0	C/11546270-11549066	AT3G29710.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G23480.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35794.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G04330.1); similar to retinitis pigmentosa GTPase regulator-like protein [Takifugu rubripes] (GB:AAG00554.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048)  
At3g29720	chr3:011551282	0.0	C/11551282-11551369,11549418-11549992	AT3G29720.1  CDS  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product transferase-related  note transferase-related; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT3G29680.1); Has 316 Blast hits to 316 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 316; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G29720.1p  transcript_id AT3G29720.1  protein_id AT3G29720.1p  transcript_id AT3G29720.1  
At3g29725	chr3:011554630	0.0	C/11554630-11555987	AT3G29725.1  pseudogenic_transcript  pseudo  gene_syn MOD1.11  note pseudogene, N-hydroxycinnamoyl/benzoyltransferase, blastp match of 38% identity and 1.6e-55 P-value to GP|10187185|emb|CAC09066.1||AX025514 cDNA~Lemon acyl transferase {Citrus limon}  
At3g29727	chr3:011558897	0.0	C/11558897-11560688	AT3G29727.1  mRNA_TE_gene  pseudo  gene_syn MOD1.13  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 5.9e-09 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)  
At3g29730	chr3:011561514	0.0	C/11561514-11564092	AT3G29730.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 6.3e-42 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At3g29732	chr3:011565143	0.0	C/11565143-11568987	AT3G29732.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 9.9e-152 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At3g29734	chr3:011570475	0.0	W/11570475-11573321	AT3G29734.1  mRNA_TE_gene  pseudo  gene_syn MOD1.16  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 6.5e-179 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At3g29736	chr3:011573558	0.0	W/11573558-11575204	AT3G29736.1  mRNA_TE_gene  pseudo  gene_syn MOD1.28  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 7.4e-29 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At3g29738	chr3:011575434	0.0	C/11575434-11575640	AT3G29738.1  mRNA_TE_gene  pseudo  gene_syn MOD1.30  note Transposable element gene, pseudogene, hypothetical protein  
At3g29739	chr3:011575683	0.0	W/11575683-11577116	AT3G29739.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp1/En/Spm), has a 1.8e-33 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)  
At3g29740	chr3:011578468	0.0	W/11578468-11578608,11578725-11578847	AT3G29740.1  CDS  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT2G40440.1); Has 31 Blast hits to 28 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G29740.1p  transcript_id AT3G29740.1  protein_id AT3G29740.1p  transcript_id AT3G29740.1  
At3g29750	chr3:011580409	0.0	C/11580409-11580600,11579597-11580331,11579383-11579518,11579125-11579327	AT3G29750.1  CDS  go_component cytoplasm|GO:0005737||IEA  go_process translation|GO:0006412||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_process proteolysis|GO:0006508||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function ATP binding|GO:0005524||IEA  product ATP binding / aminoacyl-tRNA ligase/ aspartic-type endopeptidase/ nucleotide binding  note ATP binding / aminoacyl-tRNA ligase/ aspartic-type endopeptidase/ nucleotide binding; FUNCTIONS IN: aspartic-type endopeptidase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: proteolysis, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (D, K and N)-like (InterPro:IPR018150), Peptidase aspartic, catalytic (InterPro:IPR009007), Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: ATP binding / aminoacyl-tRNA ligase/ nucleotide binding (TAIR:AT3G30770.1); Has 136 Blast hits to 135 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G29750.1p  transcript_id AT3G29750.1  protein_id AT3G29750.1p  transcript_id AT3G29750.1  
At3g29755	chr3:011581316	0.0	W/11581316-11585251	AT3G29755.1  mRNA_TE_gene  pseudo  gene_syn MOD1.19  note Transposable element gene, gypsy-like retrotransposon family, has a 5.5e-180 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At3g29760	chr3:011590822	0.0	C/11590822-11591833,11590659-11590740,11590502-11590568,11590238-11590423,11590064-11590114	AT3G29760.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NLI interacting factor (NIF) family protein  note NLI interacting factor (NIF) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: NLI interacting factor (NIF) family protein (TAIR:AT2G36540.1); Has 1080 Blast hits to 720 proteins in 195 species: Archae - 0; Bacteria - 190; Metazoa - 254; Fungi - 96; Plants - 94; Viruses - 82; Other Eukaryotes - 364 (source: NCBI BLink).  protein_id AT3G29760.1p  transcript_id AT3G29760.1  protein_id AT3G29760.1p  transcript_id AT3G29760.1  
At3g29762	chr3:011593203	0.0	C/11593203-11593470	AT3G29762.1  pseudogenic_transcript  pseudo  gene_syn MOD1.3  note pseudogene, RNA polymerase A beta prime subunit (fragment), similar to RNA polymerase A beta prime subunit GB:CAB48413 (Chloroplast Sinapis alba)  
At3g29763	chr3:011593924	0.0	C/11593924-11595441	AT3G29763.1  CDS  gene_syn T26G12.23  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: hAT dimerisation domain-containing protein (TAIR:AT1G19260.1); Has 438 Blast hits to 418 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 306; Fungi - 1; Plants - 128; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G29763.1p  transcript_id AT3G29763.1  protein_id AT3G29763.1p  transcript_id AT3G29763.1  
At3g29765	chr3:011595467	0.0	C/11595467-11597077	AT3G29765.1  CDS  gene_syn T26G12.24  go_function protein dimerization activity|GO:0046983||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product hAT dimerisation domain-containing protein  note hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906); BEST Arabidopsis thaliana protein match is: hAT dimerisation domain-containing protein (TAIR:AT1G19260.1); Has 434 Blast hits to 420 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 296; Fungi - 1; Plants - 135; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G29765.1p  transcript_id AT3G29765.1  protein_id AT3G29765.1p  transcript_id AT3G29765.1  
At3g29766	chr3:011597405	0.0	C/11597405-11599821	AT3G29766.1  mRNA_TE_gene  pseudo  gene_syn T26G12.17  note Transposable element gene, pseudogene, similar to putative transposable element, similar to transposase (Tip100) GB:BAA36225 (Ipomoea purpurea); blastp match of 55% identity and 1.0e-224 P-value to GP|13122426|dbj|BAB32907.1||AP003047 putative transposable element {Oryza sativa (japonica cultivar-group)}  
At3g29764	chr3:011601686	0.0	C/11601686-11602012	AT3G29764.1  pseudogenic_transcript  pseudo  gene_syn T26G12.1  note pseudogene, DNA-directed RNA polymerase Beta chain (fragment), blastp match of 55% identity and 1.5e-06 P-value to GP|6006460|emb|CAB56784.1||AJ012560 RNA polymerase {Ginkgo biloba}  
At3g29788	chr3:011602028	0.0	C/11602028-11603824	AT3G29788.1  pseudogenic_transcript  pseudo  function unknown pseudogene  
At3g29767	chr3:011604027	0.0	C/11604027-11606698	AT3G29767.1  mRNA_TE_gene  pseudo  gene_syn T26G12.3  note Transposable element gene, pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 35% identity and 7.4e-43 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}  
At3g29768	chr3:011608200	0.0	C/11608200-11610741	AT3G29768.1  mRNA_TE_gene  pseudo  gene_syn T26G12.4  note Transposable element gene, copia-like retrotransposon family, has a 1.4e-85 P-value blast match to GB:BAA11674 ORF(AA 1-1338) (Ty1_Copia-element) (Nicotiana tabacum)  
At3g29789	chr3:011611247	0.0	C/11611247-11611576	AT3G29789.1  pseudogenic_transcript  pseudo  function Pseudogene of AT3G29785  
At3g29785	chr3:011612357	0.0	C/11612357-11612686	AT3G29785.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 149 Blast hits to 149 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G29785.1p  transcript_id AT3G29785.1  protein_id AT3G29785.1p  transcript_id AT3G29785.1  
At3g29771	chr3:011618421	0.0	W/11618421-11619305	AT3G29771.1  mRNA_TE_gene  pseudo  gene_syn T26G12.6  note Transposable element gene, pseudogene, hypothetical protein  
At3g29772	chr3:011619998	0.0	W/11619998-11621219	AT3G29772.1  mRNA_TE_gene  pseudo  gene_syn T26G12.7  note Transposable element gene, pseudogene, similar to B1129H01.3, blastp match of 51% identity and 1.2e-59 P-value to GP|20161194|dbj|BAB90121.1||AP003370 B1129H01.3 {Oryza sativa (japonica cultivar-group)}  
At3g29773	chr3:011627225	0.0	W/11627225-11630679	AT3G29773.1  pseudogenic_transcript  pseudo  gene_syn T26G12.8  note pseudogene, similar to OSJNBb0043H09.1, blastp match of 34% identity and 6.6e-21 P-value to GP|21740634|emb|CAD40195.1||AL606611 OSJNBb0043H09.1 {Oryza sativa (japonica cultivar-group)}  
At3g29769	chr3:011634015	0.0	W/11634015-11637053	AT3G29769.1  mRNA_TE_gene  pseudo  gene_syn T26G12.9  note Transposable element gene, gypsy-like retrotransposon family, has a 5.5e-252 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At3g29774	chr3:011639507	0.0	W/11639507-11640914	AT3G29774.1  mRNA_TE_gene  pseudo  gene_syn T26G12.10  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.6e-07 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At3g29770	chr3:011648471	0.0	W/11648471-11648851,11649604-11649840,11649929-11650072,11650155-11650565	AT3G29770.1  CDS  gene_syn ARABIDOPSIS THALIANA METHYL ESTERASE 11, ATMES11, MES11, METHYL ESTERASE 11  gene MES11  function Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.  go_component chloroplast|GO:0009507||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function hydrolase activity|GO:0016787||ISS  product MES11 (METHYL ESTERASE 11); hydrolase  note METHYL ESTERASE 11 (MES11); FUNCTIONS IN: hydrolase activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: MES15 (METHYL ESTERASE 15); hydrolase (TAIR:AT1G69240.1); Has 1848 Blast hits to 1848 proteins in 464 species: Archae - 9; Bacteria - 962; Metazoa - 62; Fungi - 41; Plants - 349; Viruses - 0; Other Eukaryotes - 425 (source: NCBI BLink).  protein_id AT3G29770.1p  transcript_id AT3G29770.1  protein_id AT3G29770.1p  transcript_id AT3G29770.1  
At3g29786	chr3:011651649	0.0	W/11651649-11652437	AT3G29786.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G43320.1)  
At3g29776	chr3:011653006	0.0	W/11653006-11657482	AT3G29776.1  mRNA_TE_gene  pseudo  gene_syn T26G12.14  note Transposable element gene, copia-like retrotransposon family, has a 1.3e-178 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At3g29777	chr3:011658757	0.0	C/11658757-11659845	AT3G29777.1  mRNA_TE_gene  pseudo  gene_syn T26G12.15  note Transposable element gene, Mutator-like transposase family, has a 5.6e-22 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g29778	chr3:011660602	0.0	W/11660602-11663681	AT3G29778.1  mRNA_TE_gene  pseudo  gene_syn T26G12.16  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 8.1e-43 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)  
At3g29775	chr3:011665356	0.0	W/11665356-11669402	AT3G29775.1  mRNA_TE_gene  pseudo  gene_syn T26G12.20  note Transposable element gene, copia-like retrotransposon family, has a 2.8e-246 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At3g29779	chr3:011669830	0.0	W/11669830-11670426	AT3G29779.1  mRNA_TE_gene  pseudo  gene_syn T26G12.21  note Transposable element gene, pseudogene, similar to SAE1-S9-protein, blastp match of 33% identity and 2.8e-14 P-value to GP|4760708|dbj|BAA77394.1||AB012866 SAE1-S9-protein {Brassica rapa}  
At3g29780	chr3:011671741	0.0	W/11671741-11672094	AT3G29780.1  CDS  gene_syn RALFL27, ralf-like 27  gene RALFL27  function Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  go_component apoplast|GO:0048046|12611624|ISS  go_process cell-cell signaling|GO:0007267|12611624|ISS  go_function signal transducer activity|GO:0004871|12611624|TAS  product RALFL27 (ralf-like 27); signal transducer  note ralf-like 27 (RALFL27); FUNCTIONS IN: signal transducer activity; INVOLVED IN: cell-cell signaling; LOCATED IN: apoplast; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); Has 14 Blast hits to 14 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G29780.1p  transcript_id AT3G29780.1  protein_id AT3G29780.1p  transcript_id AT3G29780.1  
At3g29781	chr3:011676199	0.0	W/11676199-11678062	AT3G29781.1  mRNA_TE_gene  pseudo  gene_syn T26G12.19  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 6.7e-83 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota)  
At3g29783	chr3:011679182	0.0	W/11679182-11683251	AT3G29783.1  mRNA_TE_gene  pseudo  gene_syn T26G12.22  note Transposable element gene, copia-like retrotransposon family, has a 4.3e-193 P-value blast match to gb|AAO73523.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At3g29782	chr3:011684240	0.0	W/11684240-11688370	AT3G29782.1  mRNA_TE_gene  pseudo  gene_syn K17E7.1  note Transposable element gene, copia-like retrotransposon family, has a 3.6e-182 P-value blast match to GB:BAA11674 ORF(AA 1-1338) (Ty1_Copia-element) (Nicotiana tabacum)  
At3g29784	chr3:011690059	0.0	W/11690059-11691067	AT3G29784.1  mRNA_TE_gene  pseudo  gene_syn K17E7.2  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 1.5e-28 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)  
At3g29787	chr3:011691624	0.0	W/11691624-11692551	AT3G29787.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 4.8e-35 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At3g29790	chr3:011693502	0.0	C/11693502-11693622,11693095-11693408	AT3G29790.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G33528.1); Has 10 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G29790.1p  transcript_id AT3G29790.1  protein_id AT3G29790.1p  transcript_id AT3G29790.1  
At3g29791	chr3:011695756	0.0	W/11695756-11695762,11696166-11696342,11696475-11696562,11696666-11696771	AT3G29791.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G29791.1p  transcript_id AT3G29791.1  protein_id AT3G29791.1p  transcript_id AT3G29791.1  
At3g29792	chr3:011697578	0.0	W/11697578-11702083	AT3G29792.1  mRNA_TE_gene  pseudo  gene_syn K17E7.6  note Transposable element gene, copia-like retrotransposon family, has a 1.7e-243 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At3g29796	chr3:011708561	0.0	W/11708561-11708831,11709421-11709628,11710091-11710348,11710763-11710870,11710932-11711105,11711518-11711725,11712864-11713028	AT3G29796.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 39 Blast hits to 27 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT3G29796.1p  transcript_id AT3G29796.1  protein_id AT3G29796.1p  transcript_id AT3G29796.1  
At3g29797	chr3:011717613	0.0	W/11717613-11718083	AT3G29797.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G30247.1); Has 44 Blast hits to 44 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G29797.1p  transcript_id AT3G29797.1  protein_id AT3G29797.1p  transcript_id AT3G29797.1  
At3g29798	chr3:011719128	0.0	C/11719128-11719512	AT3G29798.1  mRNA_TE_gene  pseudo  gene_syn K17E7.9  note Transposable element gene, pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 30% identity and 4.0e-08 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}  
At3g29800	chr3:011720096	0.0	W/11720096-11720884,11721019-11721354,11721906-11722103	AT3G29800.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function ATP binding|GO:0005524||IEA  go_process biological_process|GO:0008150||ND  go_function ATP binding|GO:0005524||ISS  go_function ATPase activity|GO:0016887||ISS  product AAA-type ATPase family  note AAA-type ATPase family; FUNCTIONS IN: ATPase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT5G17740.1); Has 1346 Blast hits to 1340 proteins in 234 species: Archae - 48; Bacteria - 149; Metazoa - 274; Fungi - 300; Plants - 375; Viruses - 5; Other Eukaryotes - 195 (source: NCBI BLink).  protein_id AT3G29800.1p  transcript_id AT3G29800.1  protein_id AT3G29800.1p  transcript_id AT3G29800.1  
At3g29805	chr3:011726640	0.0	C/11726640-11727261	AT3G29805.1  mRNA_TE_gene  pseudo  gene_syn K17E7.11  note Transposable element gene, pseudogene, hypothetical protein  
At3g29810	chr3:011728212	0.0	W/11728212-11728290,11728553-11728632,11728748-11729204,11729288-11729444,11729521-11729789,11729875-11730158	AT3G29810.1  CDS  gene_syn COBL2, COBRA-LIKE PROTEIN 2 PRECURSOR  gene COBL2  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12376623|TAS  go_component anchored to membrane|GO:0031225|12805590|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product COBL2 (COBRA-LIKE PROTEIN 2 PRECURSOR)  note COBRA-LIKE PROTEIN 2 PRECURSOR (COBL2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918), COBRA-like (InterPro:IPR017391); BEST Arabidopsis thaliana protein match is: COBL1 (COBRA-LIKE PROTEIN 1 PRECURSOR) (TAIR:AT3G02210.1); Has 245 Blast hits to 241 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 245; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G29810.1p  transcript_id AT3G29810.1  protein_id AT3G29810.1p  transcript_id AT3G29810.1  
At3g29820	chr3:011733308	0.0	W/11733308-11734816	AT3G29820.1  mRNA_TE_gene  pseudo  gene_syn K17E7.13  note Transposable element gene, pseudogene, similar to putative reverse transcriptase, blastp match of 23% identity and 1.1e-09 P-value to GP|13786450|gb|AAK39575.1|AC025296_10|AC025296 putative reverse transcriptase {Oryza sativa}  
At3g29830	chr3:011737049	0.0	W/11737049-11737981,11738296-11738469,11738560-11738847	AT3G29830.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G56400.1); Has 834 Blast hits to 814 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 833; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G29830.1p  transcript_id AT3G29830.1  protein_id AT3G29830.1p  transcript_id AT3G29830.1  
At3g29970	chr3:011745299	0.0	W/11745299-11745322,11745995-11746083,11746331-11746481	AT3G29970.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product germination protein-related  note germination protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, 4 leaf senescence stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: B12D (InterPro:IPR010530); BEST Arabidopsis thaliana protein match is: senescence-associated protein, putative (TAIR:AT3G48140.1); Has 77 Blast hits to 77 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G29970.1p  transcript_id AT3G29970.1  protein_id AT3G29970.1p  transcript_id AT3G29970.1  
At3g30110	chr3:011746725	0.0	C/11746725-11748496	AT3G30110.1  pseudogenic_transcript  pseudo  gene_syn K17E7.16  note pseudogene, hypothetical protein  
At3g30120	chr3:011752005	0.0	C/11752005-11756485	AT3G30120.1  pseudogenic_transcript  pseudo  gene_syn K17E7.17  note pseudogene, similar to CTV.22, blastp match of 29% identity and 4.9e-74 P-value to GP|24461867|gb|AAN62354.1|AF506028_23|AF506028 CTV.22 {Poncirus trifoliata}  
At3g30122	chr3:011758491	0.0	C/11758491-11760858	AT3G30122.1  pseudogenic_transcript  pseudo  gene_syn AT3G30140, K17E7.18  function pseudogene similar to peptide chain release factor protein  note expressed protein  
At3g30145	chr3:011767113	0.0	C/11767113-11772223	AT3G30145.1  mRNA_TE_gene  pseudo  gene_syn T20F20.2  note Transposable element gene, pseudogene, putative helicase protein, blastp match of 39% identity and 7.7e-124 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)}  
At3g30147	chr3:011777211	0.0	C/11777211-11778152	AT3G30147.1  pseudogenic_transcript  pseudo  gene_syn T20F20.3  note pseudogene, hypothetical protein  
At3g30150	chr3:011782156	0.0	C/11782156-11783112	AT3G30150.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G31990.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At3g30160	chr3:011785188	0.0	C/11785188-11785377,11784990-11785075	AT3G30160.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G35320.1); Has 9 Blast hits to 9 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G30160.1p  transcript_id AT3G30160.1  protein_id AT3G30160.1p  transcript_id AT3G30160.1  
At3g30170	chr3:011793902	0.0	W/11793902-11797216	AT3G30170.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 3.2e-51 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At3g30180	chr3:011810867	0.0	W/11810867-11811057,11811151-11811475,11811900-11812049,11812133-11812378,11812457-11812543,11812629-11812707,11813017-11813123,11813213-11813337,11813422-11813509	AT3G30180.1  CDS  gene_syn BR6OX2, BRASSINOSTEROID-6-OXIDASE 2, CYP85A2  gene BR6OX2  function Encodes a cytochrome p450 enzyme that catalyzes the last reaction in the production of brassinolide. It is capable of converting 6-deoxocastasterone into castasterone, a C-6 oxidation, as well as the further conversion of castasterone into brassinolide by a Baeyer-Villinger oxidation reaction at C-6, resulting in the formation of an unusual seven-membered lactone ring. The enzyme possesses high affinity for both C28- and C27-Brassinosteroids. The expression of the gene using a CYP85A2 promoter:LUC fusion construct was shown to be under circadian and light control.  go_component endomembrane system|GO:0012505||IEA  go_process circadian rhythm|GO:0007623|16531479|IEP  go_process response to light stimulus|GO:0009416|16531479|IEP  go_process brassinosteroid biosynthetic process|GO:0016132|15710611|IDA  go_function monooxygenase activity|GO:0004497|15710611|IDA  go_function monooxygenase activity|GO:0004497|16024588|IDA  go_function oxygen binding|GO:0019825||ISS  product BR6OX2 (BRASSINOSTEROID-6-OXIDASE 2); monooxygenase/ oxygen binding  note BRASSINOSTEROID-6-OXIDASE 2 (BR6OX2); FUNCTIONS IN: monooxygenase activity, oxygen binding; INVOLVED IN: response to light stimulus, circadian rhythm, brassinosteroid biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: BR6OX1 (BRASSINOSTEROID-6-OXIDASE 1); monooxygenase/ oxygen binding (TAIR:AT5G38970.1); Has 20929 Blast hits to 20891 proteins in 1194 species: Archae - 21; Bacteria - 2546; Metazoa - 9309; Fungi - 3450; Plants - 4631; Viruses - 3; Other Eukaryotes - 969 (source: NCBI BLink).  protein_id AT3G30180.1p  transcript_id AT3G30180.1  protein_id AT3G30180.1p  transcript_id AT3G30180.1  
At3g30183	chr3:011815719	0.0	W/11815719-11816978	AT3G30183.1  mRNA_TE_gene  pseudo  gene_syn T20F20.10  note Transposable element gene, pseudogene, putative Ser-Thr protein kinase protein, blastp match of 28% identity and 4.5e-08 P-value to GP|21450442|gb|AAM54146.1|AC104616_5|AC104616 putative reverse transcriptase. {Oryza sativa (japonica cultivar-group)}  
At3g30187	chr3:011819877	0.0	C/11819877-11820755	AT3G30187.1  pseudogenic_transcript  pseudo  gene_syn T20F20.11  note pseudogene, hypothetical protein  
At3g30190	chr3:011821274	0.0	W/11821274-11822341	AT3G30190.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G24370.1); similar to conserved hypothetical protein [Asparagus officinalis] (GB:ABB55318.1); contains InterPro domain Protein of unknown function DUF635; (InterPro:IPR006912); contains InterPro domain Bacterial adhesion; (InterPro:IPR008966)  
At3g30200	chr3:011834189	0.0	C/11834189-11834262,11831989-11832060,11831475-11831589,11831042-11831277,11829737-11829864,11829348-11829445,11828757-11828960,11828580-11828672,11828405-11828510,11828037-11828329,11827855-11827944,11827752-11827775	AT3G30200.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Transposase, Ptta/En/Spm, plant (InterPro:IPR004252); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G40087.1); Has 94 Blast hits to 94 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G30200.1p  transcript_id AT3G30200.1  protein_id AT3G30200.1p  transcript_id AT3G30200.1  
At3g30210	chr3:011838567	0.0	W/11838567-11838744,11839404-11839533,11839791-11840313	AT3G30210.1  CDS  gene_syn ATMYB121, MYB DOMAIN PROTEIN 121, MYB121  gene MYB121  function Encodes a putative transcription factor, member of the R2R3 factor gene family (MYB121).  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB121 (MYB DOMAIN PROTEIN 121); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 121 (MYB121); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to abscisic acid stimulus, regulation of transcription, DNA-dependent; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB305 (myb domain protein 305); DNA binding / transcription factor (TAIR:AT3G24310.1); Has 6497 Blast hits to 5950 proteins in 372 species: Archae - 0; Bacteria - 0; Metazoa - 762; Fungi - 324; Plants - 3768; Viruses - 6; Other Eukaryotes - 1637 (source: NCBI BLink).  protein_id AT3G30210.1p  transcript_id AT3G30210.1  protein_id AT3G30210.1p  transcript_id AT3G30210.1  
At3g30211	chr3:011841552	0.0	C/11841552-11845610	AT3G30211.1  mRNA_TE_gene  pseudo  gene_syn MIL15.4  note Transposable element gene, gypsy-like retrotransposon family, has a 4.5e-83 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At3g30212	chr3:011845992	0.0	W/11845992-11847428	AT3G30212.1  mRNA_TE_gene  pseudo  gene_syn MIL15.5  note Transposable element gene, copia-like retrotransposon family, has a 4.6e-19 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At3g30213	chr3:011854479	0.0	W/11854479-11857261	AT3G30213.1  mRNA_TE_gene  pseudo  gene_syn MIL15.6  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.2e-53 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g30214	chr3:011860800	0.0	C/11860800-11861666	AT3G30214.1  pseudogenic_transcript  pseudo  gene_syn MIL15.7  function pseudogene of unknown protein  note expressed protein  
At3g30216	chr3:011865714	0.0	W/11865714-11866320	AT3G30216.1  mRNA_TE_gene  pseudo  gene_syn MIL15.9  note Transposable element gene, pseudogene, hypothetical protein, contains some similarity to polyproteins  
At3g30218	chr3:011867790	0.0	W/11867790-11871278	AT3G30218.1  mRNA_TE_gene  pseudo  gene_syn MIL15.10  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 8.1e-82 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At3g30219	chr3:011871571	0.0	W/11871571-11876783	AT3G30219.1  mRNA_TE_gene  pseudo  gene_syn MIL15.11  note Transposable element gene, gypsy-like retrotransposon family, has a 6.7e-200 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At3g30220	chr3:011878300	0.0	C/11878300-11878458,11878021-11878184,11877866-11877980	AT3G30220.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43150.1); Has 26 Blast hits to 26 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G30220.1p  transcript_id AT3G30220.1  protein_id AT3G30220.1p  transcript_id AT3G30220.1  
At3g30222	chr3:011878632	0.0	C/11878632-11878907	AT3G30222.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G30222.1p  transcript_id AT3G30222.1  protein_id AT3G30222.1p  transcript_id AT3G30222.1  
At3g30230	chr3:011881334	0.0	C/11881334-11881788,11880443-11880759,11880165-11880292,11879405-11880002,11879235-11879320	AT3G30230.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product myosin heavy chain-related  note myosin heavy chain-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT5G32590.1); Has 763 Blast hits to 730 proteins in 164 species: Archae - 21; Bacteria - 71; Metazoa - 388; Fungi - 72; Plants - 103; Viruses - 1; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT3G30230.1p  transcript_id AT3G30230.1  protein_id AT3G30230.1p  transcript_id AT3G30230.1  
At3g30235	chr3:011882266	0.0	W/11882266-11882365,11882737-11882831,11882983-11883147,11883214-11883251,11883517-11883625	AT3G30235.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: hAT dimerisation domain-containing protein (TAIR:AT1G19260.1).  protein_id AT3G30235.1p  transcript_id AT3G30235.1  protein_id AT3G30235.1p  transcript_id AT3G30235.1  
At3g30240	chr3:011883825	0.0	W/11883825-11884487	AT3G30240.1  mRNA_TE_gene  pseudo  note Transposable element gene, contains InterPro domain Retrotransposon gag protein; (InterPro:IPR005162)  
At3g30245	chr3:011887094	0.0	W/11887094-11887485	AT3G30245.1  pseudogenic_transcript  pseudo  function Encodes a defensin-like (DEFL) family protein.  
At3g30247	chr3:011888221	0.0	C/11888221-11888697	AT3G30247.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G29797.1); Has 50 Blast hits to 50 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G30247.1p  transcript_id AT3G30247.1  protein_id AT3G30247.1p  transcript_id AT3G30247.1  
At3g30250	chr3:011890759	0.0	C/11890759-11891432	AT3G30250.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G31150.1); contains InterPro domain von Willebrand factor, type A; (InterPro:IPR002035)  
At3g30260	chr3:011909119	0.0	W/11909119-11909303,11911013-11911091,11911199-11911263,11911364-11911463,11911641-11911682,11912249-11912290,11912490-11912620,11912775-11912880	AT3G30260.1  CDS  gene_syn AGAMOUS-LIKE 79, AGL79  gene AGL79  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product AGL79 (AGAMOUS-LIKE 79); DNA binding / transcription factor  note AGAMOUS-LIKE 79 (AGL79); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: CAL (CAULIFLOWER); DNA binding / transcription factor (TAIR:AT1G26310.1); Has 5278 Blast hits to 5273 proteins in 691 species: Archae - 0; Bacteria - 0; Metazoa - 561; Fungi - 202; Plants - 4462; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT3G30260.1p  transcript_id AT3G30260.1  protein_id AT3G30260.1p  transcript_id AT3G30260.1  
At3g30280	chr3:011914366	0.0	W/11914366-11915697	AT3G30280.1  CDS  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT4G15390.1); Has 1234 Blast hits to 1228 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 33; Plants - 1199; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G30280.1p  transcript_id AT3G30280.1  protein_id AT3G30280.1p  transcript_id AT3G30280.1  
At3g30281	chr3:011915863	0.0	C/11915863-11916781	AT3G30281.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G19260; hAT dimerisation domain-containing protein  
At3g30290	chr3:011919229	0.0	C/11919229-11919546,11918993-11919142,11918563-11918898,11917654-11917836,11917430-11917557,11917230-11917341	AT3G30290.1  CDS  gene_syn CYP702A8  gene CYP702A8  function a member of cytochrome P450 gene family  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function oxygen binding|GO:0019825||ISS  product CYP702A8; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP702A8; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group IV (InterPro:IPR002403), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, C-terminal region (InterPro:IPR017973); BEST Arabidopsis thaliana protein match is: CYP702A2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G15300.1); Has 19134 Blast hits to 19102 proteins in 1076 species: Archae - 21; Bacteria - 2071; Metazoa - 9122; Fungi - 2833; Plants - 4304; Viruses - 6; Other Eukaryotes - 777 (source: NCBI BLink).  protein_id AT3G30290.1p  transcript_id AT3G30290.1  protein_id AT3G30290.1p  transcript_id AT3G30290.1  
At3g30300	chr3:011924057	0.0	C/11924057-11924254,11923819-11923903,11923633-11923703,11923466-11923554,11923149-11923392,11922963-11923075,11922788-11922878,11922562-11922690,11921929-11922479,11921390-11921852	AT3G30300.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: EDA30 (embryo sac development arrest 30) (TAIR:AT3G03810.1); Has 512 Blast hits to 417 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 512; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G30300.1p  transcript_id AT3G30300.1  protein_id AT3G30300.1p  transcript_id AT3G30300.1  
At3g30310	chr3:011928702	0.0	W/11928702-11929227	AT3G30310.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35920.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At3g30320	chr3:011931287	0.0	W/11931287-11931465,11931612-11931725,11932390-11932563,11932614-11933116,11933224-11933376,11933730-11934694	AT3G30320.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G30320.1p  transcript_id AT3G30320.1  protein_id AT3G30320.1p  transcript_id AT3G30320.1  
At3g30330	chr3:011936237	0.0	C/11936237-11941273	AT3G30330.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 1.7e-83 P-value blast match to At1g36190.1/92-340 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At3g30335	chr3:011941473	0.0	C/11941473-11945087	AT3G30335.1  mRNA_TE_gene  pseudo  gene_syn T6J22.11  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 2.2e-129 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays)  
At3g30340	chr3:011956626	0.0	W/11956626-11956813,11957095-11957157,11957253-11957369,11957455-11957857,11958111-11958262,11958798-11958969	AT3G30340.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  product nodulin MtN21 family protein  note nodulin MtN21 family protein; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT4G01440.1); Has 2660 Blast hits to 2648 proteins in 349 species: Archae - 17; Bacteria - 949; Metazoa - 4; Fungi - 0; Plants - 636; Viruses - 0; Other Eukaryotes - 1054 (source: NCBI BLink).  protein_id AT3G30340.1p  transcript_id AT3G30340.1  protein_id AT3G30340.1p  transcript_id AT3G30340.1  
At3g30345	chr3:011959167	0.0	W/11959167-11959239	AT3G30345.1  tRNA  gene_syn 60622.TRNA-LYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Lys (anticodon: CTT)  transcript_id AT3G30345.1  
At3g30350	chr3:011961677	0.0	C/11961677-11961764,11961481-11961548,11961285-11961390,11960850-11960896,11960552-11960734	AT3G30350.1  CDS  gene_syn GLV3, GOLVEN 3  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G30350.1p  transcript_id AT3G30350.1  protein_id AT3G30350.1p  transcript_id AT3G30350.1  
At3g30360	chr3:011964523	0.0	W/11964523-11965063	AT3G30360.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G18420.1); similar to hypothetical protein 26.t00076 [Brassica oleracea] (GB:ABD65021.1)  
At3g30370	chr3:011965180	0.0	C/11965180-11965719	AT3G30370.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transposase, MuDR, plant (InterPro:IPR004332); BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (TAIR:AT1G18050.1); Has 28 Blast hits to 28 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G30370.1p  transcript_id AT3G30370.1  protein_id AT3G30370.1p  transcript_id AT3G30370.1  
At3g30380	chr3:011974424	0.0	W/11974424-11974722,11975451-11975487,11975556-11975792,11975869-11975916,11975993-11976432,11976499-11976571	AT3G30380.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01690.1).  protein_id AT3G30380.2p  transcript_id AT3G30380.2  protein_id AT3G30380.2p  transcript_id AT3G30380.2  
At3g30380	chr3:011974424	0.0	W/11974424-11974722,11975451-11975487,11975556-11975792,11975869-11975916,11975993-11976571	AT3G30380.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01690.1); Has 3127 Blast hits to 3124 proteins in 513 species: Archae - 3; Bacteria - 775; Metazoa - 627; Fungi - 135; Plants - 158; Viruses - 6; Other Eukaryotes - 1423 (source: NCBI BLink).  protein_id AT3G30380.1p  transcript_id AT3G30380.1  protein_id AT3G30380.1p  transcript_id AT3G30380.1  
At3g30390	chr3:011978404	0.0	C/11978404-11978827,11978168-11978320,11977887-11978090,11977330-11977795,11977112-11977247	AT3G30390.1  CDS  function Encodes a putative amino acid transporter.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product amino acid transporter family protein  note amino acid transporter family protein; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid transporter family protein (TAIR:AT5G38820.1); Has 3086 Blast hits to 3031 proteins in 263 species: Archae - 5; Bacteria - 246; Metazoa - 1241; Fungi - 453; Plants - 507; Viruses - 5; Other Eukaryotes - 629 (source: NCBI BLink).  protein_id AT3G30390.1p  transcript_id AT3G30390.1  protein_id AT3G30390.1p  transcript_id AT3G30390.1  
At3g30390	chr3:011978404	0.0	C/11978404-11978827,11978168-11978320,11977887-11978090,11977330-11977795,11977112-11977247	AT3G30390.2  CDS  function Encodes a putative amino acid transporter.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product amino acid transporter family protein  note amino acid transporter family protein; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid transporter family protein (TAIR:AT5G38820.1); Has 3086 Blast hits to 3031 proteins in 263 species: Archae - 5; Bacteria - 246; Metazoa - 1241; Fungi - 453; Plants - 507; Viruses - 5; Other Eukaryotes - 629 (source: NCBI BLink).  protein_id AT3G30390.2p  transcript_id AT3G30390.2  protein_id AT3G30390.2p  transcript_id AT3G30390.2  
At3g30383	chr3:011984655	0.0	W/11984655-11985002	AT3G30383.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G30387.1); Has 36 Blast hits to 36 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G30383.1p  transcript_id AT3G30383.1  protein_id AT3G30383.1p  transcript_id AT3G30383.1  
At3g30384	chr3:011986517	0.0	W/11986517-11986866	AT3G30384.1  pseudogenic_transcript  pseudo  function Encodes a ECA1 gametogenesis related family protein [pseudogene]  
At3g30385	chr3:011988381	0.0	W/11988381-11988728	AT3G30385.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G30387.1); Has 45 Blast hits to 45 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G30385.1p  transcript_id AT3G30385.1  protein_id AT3G30385.1p  transcript_id AT3G30385.1  
At3g30386	chr3:011990241	0.0	W/11990241-11990588	AT3G30386.1  pseudogenic_transcript  pseudo  function Encodes a ECA1 gametogenesis related family protein [pseudogene]  
At3g30387	chr3:011992105	0.0	W/11992105-11992452	AT3G30387.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G30385.1); Has 45 Blast hits to 45 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G30387.1p  transcript_id AT3G30387.1  protein_id AT3G30387.1p  transcript_id AT3G30387.1  
At3g30388	chr3:011993964	0.0	W/11993964-11994308	AT3G30388.1  pseudogenic_transcript  pseudo  function Encodes a ECA1 gametogenesis related family protein [pseudogene]  
At3g30391	chr3:011996835	0.0	C/11996835-11996939	AT3G30391.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G30391.1p  transcript_id AT3G30391.1  protein_id AT3G30391.1p  transcript_id AT3G30391.1  
At3g30393	chr3:011998920	0.0	W/11998920-12003671	AT3G30393.1  mRNA_TE_gene  pseudo  gene_syn MVA11.3  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 7.1e-144 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At3g30396	chr3:012004587	0.0	W/12004587-12007067	AT3G30396.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 3.1e-39 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At3g30400	chr3:012009590	0.0	C/12009590-12012152	AT3G30400.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.1e-46 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g30405	chr3:012019426	0.0	W/12019426-12025026	AT3G30405.1  mRNA_TE_gene  pseudo  gene_syn MVA11.8  note Transposable element gene, gypsy-like retrotransposon family, has a 1.1e-154 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At3g30410	chr3:012025652	0.0	C/12025652-12027384	AT3G30410.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 5.4e-26 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At3g30411	chr3:012028453	0.0	C/12028453-12033525	AT3G30411.1  mRNA_TE_gene  pseudo  gene_syn MVA11.10  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At3g30413	chr3:012033720	0.0	C/12033720-12038688	AT3G30413.1  mRNA_TE_gene  pseudo  gene_syn MVA11.11  note Transposable element gene, gypsy-like retrotransposon family, has a 5.9e-221 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At3g30415	chr3:012039061	0.0	W/12039061-12041042	AT3G30415.1  pseudogenic_transcript  pseudo  gene_syn MVA11.13  note pseudogene, putative urophorphyrin III methylase, blastp match of 80% identity and 2.7e-49 P-value to GP|20161485|dbj|BAB90408.1||AP003681 uroporphyrin-III C-methyltransferase-like protein {Oryza sativa (japonica cultivar-group)}  
At3g30416	chr3:012043707	0.0	W/12043707-12049221	AT3G30416.1  mRNA_TE_gene  pseudo  gene_syn MVA11.14  note Transposable element gene, pseudogene, hypothetical protein  
At3g30418	chr3:012050702	0.0	C/12050702-12056135	AT3G30418.1  mRNA_TE_gene  pseudo  gene_syn MVA11.15  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 6.5e-204 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g30420	chr3:012057058	0.0	W/12057058-12060589	AT3G30420.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G54430.1); similar to putative helicase [Oryza sativa (japonica cultivar-group)] (GB:AAV44035.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Protein of unknown function DUF889, eukaryote; (InterPro:IPR010285)  
At3g30430	chr3:012064952	0.0	W/12064952-12065296	AT3G30430.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G35280.1); Has 13 Blast hits to 13 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G30430.1p  transcript_id AT3G30430.1  protein_id AT3G30430.1p  transcript_id AT3G30430.1  
At3g30433	chr3:012066910	0.0	C/12066910-12069949	AT3G30433.1  mRNA_TE_gene  pseudo  gene_syn MSJ3.2  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.8e-80 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g30436	chr3:012071273	0.0	W/12071273-12073068	AT3G30436.1  mRNA_TE_gene  pseudo  gene_syn MSJ3.3  note Transposable element gene, gypsy-like retrotransposon family, has a 1.0e-72 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At3g30440	chr3:012077917	0.0	W/12077917-12081875	AT3G30440.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G47260.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G32840.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G04010.1); similar to hypothetical protein 26.t00072 [Brassica oleracea] (GB:ABD65017.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At3g30450	chr3:012083626	0.0	W/12083626-12087431	AT3G30450.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT3G47270.1); similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT2G04970.1); similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT2G14140.1); similar to Agenet domain containing protein [Brassica oleracea] (GB:ABD65016.1); contains InterPro domain Protein of unknown function DUF1299; (InterPro:IPR010725); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623)  
At3g30455	chr3:012088253	0.0	C/12088253-12090153	AT3G30455.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 1.6e-79 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g30456	chr3:012094413	0.0	C/12094413-12094580	AT3G30456.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G30456.1p  transcript_id AT3G30456.1  protein_id AT3G30456.1p  transcript_id AT3G30456.1  
At3g30460	chr3:012104433	0.0	W/12104433-12104876	AT3G30460.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G02340.1); Has 6918 Blast hits to 6902 proteins in 221 species: Archae - 0; Bacteria - 6; Metazoa - 2421; Fungi - 545; Plants - 2677; Viruses - 56; Other Eukaryotes - 1213 (source: NCBI BLink).  protein_id AT3G30460.1p  transcript_id AT3G30460.1  protein_id AT3G30460.1p  transcript_id AT3G30460.1  
At3g30465	chr3:012106539	0.0	W/12106539-12111597	AT3G30465.1  mRNA_TE_gene  pseudo  gene_syn MSJ3.10  note Transposable element gene, pseudogene, hypothetical protein  
At3g30470	chr3:012112100	0.0	C/12112100-12112689	AT3G30470.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35030.1); contains InterPro domain Protein of unknown function DUF730; (InterPro:IPR007989)  
At3g30480	chr3:012114452	0.0	W/12114452-12114991	AT3G30480.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G24915.1); similar to GRF zinc finger containing protein [Brassica oleracea] (GB:ABD64950.1); contains InterPro domain Zinc finger, GRF-type; (InterPro:IPR010666)  
At3g30490	chr3:012115435	0.0	C/12115435-12115976	AT3G30490.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G24910.1)  
At3g30500	chr3:012116792	0.0	W/12116792-12117802	AT3G30500.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07690.1); similar to hypothetical protein 31.t00082 [Brassica oleracea] (GB:ABD65101.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At3g30505	chr3:012118403	0.0	C/12118403-12120419	AT3G30505.1  mRNA_TE_gene  pseudo  gene_syn MSJ3.17  note Transposable element gene, Mutator-like transposase family, has a 4.4e-49 P-value blast match to O22273 /233-373 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g30510	chr3:012120577	0.0	W/12120577-12120728	AT3G30510.1  mRNA_TE_gene  pseudo  gene_syn MSJ3.14  note Transposable element gene  
At3g30520	chr3:012130340	0.0	W/12130340-12130438,12130719-12130841,12130923-12131582,12131769-12131872,12131966-12132173	AT3G30520.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G42870.1); Has 24 Blast hits to 24 proteins in 7 species: Archae - 0; Bacteria - 8; Metazoa - 3; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G30520.1p  transcript_id AT3G30520.1  protein_id AT3G30520.1p  transcript_id AT3G30520.1  
At3g30530	chr3:012139512	0.0	W/12139512-12140033	AT3G30530.1  CDS  gene_syn ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 42, ATBZIP42  gene ATBZIP42  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function protein homodimerization activity|GO:0042803|16709202|IPI  go_function protein heterodimerization activity|GO:0046982|16709202|IPI  product ATBZIP42 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 42); DNA binding / protein heterodimerization/ protein homodimerization/ transcription factor  note ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 42 (ATBZIP42); FUNCTIONS IN: transcription factor activity, protein heterodimerization activity, protein homodimerization activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: inflorescence meristem, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: AtbZIP43 (Arabidopsis thaliana basic leucine-zipper 43); DNA binding / transcription factor (TAIR:AT5G38800.1); Has 1055 Blast hits to 1055 proteins in 117 species: Archae - 0; Bacteria - 2; Metazoa - 126; Fungi - 18; Plants - 863; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT3G30530.1p  transcript_id AT3G30530.1  protein_id AT3G30530.1p  transcript_id AT3G30530.1  
At3g30540	chr3:012146269	0.0	C/12146269-12146475,12146149-12146220,12145883-12146077,12145417-12145751,12144792-12145038	AT3G30540.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product (1-4)-beta-mannan endohydrolase family  note (1-4)-beta-mannan endohydrolase family; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: (1-4)-beta-mannan endohydrolase, putative (TAIR:AT3G10900.1); Has 416 Blast hits to 412 proteins in 108 species: Archae - 2; Bacteria - 96; Metazoa - 0; Fungi - 114; Plants - 183; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT3G30540.1p  transcript_id AT3G30540.1  protein_id AT3G30540.1p  transcript_id AT3G30540.1  
At3g30550	chr3:012147807	0.0	W/12147807-12150275	AT3G30550.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07450.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05890.1); similar to hypothetical protein 31.t00031 [Brassica oleracea] (GB:ABD65118.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At3g30560	chr3:012151949	0.0	W/12151949-12157542	AT3G30560.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to AT hook motif-containing protein-related [Arabidopsis thaliana] (TAIR:AT1G35940.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13250.1); similar to AT hook motif-containing protein-related [Arabidopsis thaliana] (TAIR:AT3G42100.1); similar to hypothetical protein 27.t00039 [Brassica oleracea] (GB:ABD65060.1); similar to hypothetical protein 31.t00030 [Brassica oleracea] (GB:ABD65117.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE80108.1); contains InterPro domain Protein of unknown function DUF889, eukaryote; (InterPro:IPR010285)  
At3g30570	chr3:012160336	0.0	W/12160336-12164591	AT3G30570.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 7.9e-38 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At3g30580	chr3:012167767	0.0	C/12167767-12168153	AT3G30580.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38790.1); Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 32; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT3G30580.1p  transcript_id AT3G30580.1  protein_id AT3G30580.1p  transcript_id AT3G30580.1  
At3g30582	chr3:012170739	0.0	C/12170739-12175434	AT3G30582.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.9e-156 P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At3g30585	chr3:012175446	0.0	W/12175446-12176849	AT3G30585.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 2.8e-33 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At3g30587	chr3:012177593	0.0	C/12177593-12180256	AT3G30587.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At3g30590	chr3:012180789	0.0	W/12180789-12181319	AT3G30590.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G24910.1)  
At3g30600	chr3:012185598	0.0	W/12185598-12186206	AT3G30600.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30470.1); contains InterPro domain Protein of unknown function DUF730; (InterPro:IPR007989)  
At3g30610	chr3:012186691	0.0	C/12186691-12187029	AT3G30610.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G12685.1)  
At3g30620	chr3:012189146	0.0	C/12189146-12191103	AT3G30620.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila)  
At3g30630	chr3:012192618	0.0	C/12192618-12195308	AT3G30630.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.1e-300 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g30640	chr3:012196035	0.0	C/12196035-12198898	AT3G30640.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G24930.1); similar to Y55B1BR.3 [Caenorhabditis elegans] (GB:NP_497198.1); similar to myosin heavy chain [Cryptosporidium hominis TU502] (GB:XP_666163.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At3g30645	chr3:012199272	0.0	C/12199272-12199881	AT3G30645.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G24930.1); similar to hypothetical protein 27.t00096 [Brassica oleracea] (GB:ABD65084.1)  
At3g30650	chr3:012200801	0.0	W/12200801-12202177	AT3G30650.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G10175.1)  
At3g30655	chr3:012203578	0.0	W/12203578-12206596	AT3G30655.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.9e-253 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g30660	chr3:012207108	0.0	W/12207108-12207341	AT3G30660.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G31753.1)  
At3g30663	chr3:012210366	0.0	C/12210366-12211703	AT3G30663.1  mRNA_TE_gene  pseudo  gene_syn MED5.2  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 6.0e-44 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At3g30665	chr3:012212483	0.0	C/12212483-12213396	AT3G30665.1  mRNA_TE_gene  pseudo  gene_syn MED5.3  note Transposable element gene, pseudogene, hypothetical protein  
At3g30668	chr3:012215244	0.0	C/12215244-12223941	AT3G30668.1  mRNA_TE_gene  pseudo  gene_syn MED5.4  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 6.6e-229 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g30670	chr3:012227087	0.0	C/12227087-12227956	AT3G30670.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G40125.1)  
At3g30680	chr3:012228316	0.0	C/12228316-12232218	AT3G30680.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 2.3e-152 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At3g30685	chr3:012234878	0.0	C/12234878-12236714	AT3G30685.1  mRNA_TE_gene  pseudo  gene_syn MED5.8  note Transposable element gene, pseudogene, similar to Hypothetical protein with similarity to putative Ac-like transposases, similar to Ac-like transposase GB:AAD25149 from (Arabidopsis thaliana); blastp match of 53% identity and 4.2e-89 P-value to GP|20042974|gb|AAM08782.1|AC016780_12|AC016780 Hypothetical protein with similarity to putative Ac-like transposases {Oryza sativa}  
At3g30690	chr3:012244881	0.0	C/12244881-12245501	AT3G30690.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30700.1)  
At3g30695	chr3:012247335	0.0	C/12247335-12253398	AT3G30695.1  mRNA_TE_gene  pseudo  gene_syn MED5.10  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.4e-308 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g30700	chr3:012254560	0.0	C/12254560-12255180	AT3G30700.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30690.1)  
At3g30703	chr3:012257910	0.0	W/12257910-12259649	AT3G30703.1  mRNA_TE_gene  pseudo  gene_syn MED5.12  note Transposable element gene, gypsy-like retrotransposon family, has a 6.1e-20 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At3g30705	chr3:012271619	0.0	C/12271619-12271726	AT3G30705.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G30705.1p  transcript_id AT3G30705.1  protein_id AT3G30705.1p  transcript_id AT3G30705.1  
At3g30708	chr3:012280455	0.0	C/12280455-12284671	AT3G30708.1  mRNA_TE_gene  pseudo  gene_syn MED5.15  note Transposable element gene, gypsy-like retrotransposon family, has a 4.3e-90 P-value blast match to gb|AAL06420.1|AF378078_1 reverse transcriptase (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At3g30709	chr3:012286486	0.0	C/12286486-12287153	AT3G30709.1  mRNA_TE_gene  pseudo  gene_syn F21A17.17  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.4e-19 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g30711	chr3:012288029	0.0	W/12288029-12290924	AT3G30711.1  mRNA_TE_gene  pseudo  gene_syn F21A17.2  note Transposable element gene, gypsy-like retrotransposon family, has a 2.9e-123 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At3g30710	chr3:012291812	0.0	C/12291812-12294137	AT3G30710.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to myosin heavy chain-related [Arabidopsis thaliana] (TAIR:AT4G08113.1); similar to hypothetical protein 26.t00052 [Brassica oleracea] (GB:ABD65035.1); contains InterPro domain Protein of unknown function DUF1633; (InterPro:IPR012436)  
At3g30712	chr3:012295250	0.0	W/12295250-12295639	AT3G30712.1  mRNA_TE_gene  pseudo  gene_syn F21A17.4  note Transposable element gene, pseudogene, hypothetical protein  
At3g30714	chr3:012300955	0.0	C/12300955-12301347	AT3G30714.1  pseudogenic_transcript  pseudo  function Pseudogene of AT3G26870; self-incompatibility protein-related  
At3g30713	chr3:012305273	0.0	C/12305273-12308582	AT3G30713.1  mRNA_TE_gene  pseudo  gene_syn F21A17.9  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.0e-08 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g30715	chr3:012309891	0.0	W/12309891-12311169	AT3G30715.1  mRNA_TE_gene  pseudo  gene_syn F21A17.10  function pseudogene of unknown protein  note Transposable element gene, expressed protein  
At3g30716	chr3:012319861	0.0	C/12319861-12326858	AT3G30716.1  mRNA_TE_gene  pseudo  gene_syn F21A17.13  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 6.9e-27 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g30717	chr3:012329195	0.0	W/12329195-12331993	AT3G30717.1  mRNA_TE_gene  pseudo  gene_syn F21A17.14  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.6e-176 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g30718	chr3:012334541	0.0	W/12334541-12337941	AT3G30718.1  mRNA_TE_gene  pseudo  gene_syn F21A17.15  note Transposable element gene, gypsy-like retrotransposon family, has a 7.7e-111 P-value blast match to F21A17 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)  
At3g30719	chr3:012341579	0.0	W/12341579-12342433	AT3G30719.1  mRNA_TE_gene  pseudo  gene_syn F21A17.16  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 5.1e-49 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota)  
At3g30721	chr3:012344260	0.0	W/12344260-12346596	AT3G30721.1  mRNA_TE_gene  pseudo  gene_syn F21A17.19  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 6.7e-134 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At3g30722	chr3:012346922	0.0	W/12346922-12348706	AT3G30722.1  mRNA_TE_gene  pseudo  gene_syn F21A17.20  note Transposable element gene, CACTA-like transposase family (Tnp1/En/Spm), has a 4.1e-24 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)  
At3g30720	chr3:012349461	0.0	W/12349461-12349478,12349565-12349726	AT3G30720.1  CDS  gene_syn QQS, QUA-QUINE STARCH  gene QQS  go_component cytosol|GO:0005829|19154206|IDA  go_process starch biosynthetic process|GO:0019252|19154206|IMP  go_function molecular_function|GO:0003674||ND  product QQS (QUA-QUINE STARCH)  note QUA-QUINE STARCH (QQS); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: starch biosynthetic process; LOCATED IN: cytosol; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 15 growth stages; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G30720.1p  transcript_id AT3G30720.1  protein_id AT3G30720.1p  transcript_id AT3G30720.1  
At3g30724	chr3:012350379	0.0	C/12350379-12350887	AT3G30724.1  mRNA_TE_gene  pseudo  gene_syn T4A2.6  note Transposable element gene, pseudogene, hypothetical protein, similar to putative GB:AAC67331 GI:3785984 non-LTR retroelement reverse transcriptase from (Arabidopsis thaliana)  
At3g30725	chr3:012352509	0.0	W/12352509-12352844	AT3G30725.1  CDS  gene_syn Arabidopsis thaliana GLUTAMINE DUMPER 6, AtGDU6  gene AtGDU6  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product AtGDU6 (Arabidopsis thaliana GLUTAMINE DUMPER 6)  note Arabidopsis thaliana GLUTAMINE DUMPER 6 (AtGDU6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 59 Blast hits to 59 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G30725.1p  transcript_id AT3G30725.1  protein_id AT3G30725.1p  transcript_id AT3G30725.1  
At3g30727	chr3:012355011	0.0	C/12355011-12356851	AT3G30727.1  mRNA_TE_gene  pseudo  gene_syn T4A2.1  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 9.6e-10 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At3g30730	chr3:012357396	0.0	C/12357396-12357599	AT3G30730.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot, shoot apex, leaf; EXPRESSED DURING: LP.04 four leaves visible; Has 43 Blast hits to 43 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G30730.1p  transcript_id AT3G30730.1  protein_id AT3G30730.1p  transcript_id AT3G30730.1  
At3g30733	chr3:012359738	0.0	C/12359738-12360033	AT3G30733.1  pseudogenic_transcript  pseudo  gene_syn T4A2.3  note pseudogene, similar to Hypothetical protein B0432.13, blastp match of 45% identity and 8.6e-10 P-value to GP|16950380|gb|AAB37893.2||U80836 Hypothetical protein B0432.13 {Caenorhabditis elegans}  
At3g30737	chr3:012361641	0.0	C/12361641-12366047	AT3G30737.1  mRNA_TE_gene  pseudo  gene_syn T4A2.4  note Transposable element gene, pseudogene, similar to putative helicase, blastp match of 48% identity and 0. P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)}  
At3g30740	chr3:012367902	0.0	W/12367902-12368118	AT3G30740.1  pseudogenic_transcript  pseudo  note 40S ribosomal protein S25 (RPS25C), pseudogene, similar to GB:P46301 GI:1173234 40S RIBOSOMAL PROTEIN S25 from (Lycopersicon esculentum); blastp match of 75% identity and 7.2e-09 P-value to SP|P46301|RS25_LYCES 40S ribosomal protein S25. (Tomato) {Lycopersicon esculentum}  
At3g30742	chr3:012371346	0.0	C/12371346-12372820	AT3G30742.1  mRNA_TE_gene  pseudo  gene_syn MIF6.2  note Transposable element gene, pseudogene, similar to putative non-LTR retroelement reverse transcriptase, similar to GB:S65812 from (Arabidopsis thaliana); blastp match of 25% identity and 4.4e-25 P-value to GP|10140689|gb|AAG13524.1|AC068924_29|AC068924 putative non-LTR retroelement reverse transcriptase {Oryza sativa (japonica cultivar-group)}  
At3g30743	chr3:012374580	0.0	W/12374580-12378046	AT3G30743.1  mRNA_TE_gene  pseudo  gene_syn MIF6.3  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 3.7e-94 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At3g30751	chr3:012378588	0.0	C/12378588-12379102	AT3G30751.1  mRNA_TE_gene  pseudo  note Transposable element gene  
At3g30744	chr3:012379790	0.0	W/12379790-12381090	AT3G30744.1  mRNA_TE_gene  pseudo  gene_syn MIF6.4  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 8.2e-41 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At3g30745	chr3:012387772	0.0	W/12387772-12391875	AT3G30745.1  mRNA_TE_gene  pseudo  gene_syn MIF6.5  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 3.2e-26 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At3g30747	chr3:012393632	0.0	W/12393632-12396810	AT3G30747.1  mRNA_TE_gene  pseudo  gene_syn MIF6.6  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element)  
At3g30746	chr3:012400029	0.0	W/12400029-12402317	AT3G30746.1  mRNA_TE_gene  pseudo  gene_syn MIF6.7  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 2.6e-53 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At3g30749	chr3:012403103	0.0	W/12403103-12412091	AT3G30749.1  mRNA_TE_gene  pseudo  gene_syn MIF6.8  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 9.4e-205 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g30748	chr3:012415657	0.0	W/12415657-12418078	AT3G30748.1  mRNA_TE_gene  pseudo  gene_syn MIF6.10  note Transposable element gene, Mutator-like transposase family, has a 5.8e-42 P-value blast match to O22273 /233-373 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g30750	chr3:012420556	0.0	W/12420556-12420993	AT3G30750.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G24910.1)  
At3g30755	chr3:012421545	0.0	C/12421545-12422098	AT3G30755.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G30480.1); similar to GRF zinc finger containing protein [Brassica oleracea] (GB:ABD64950.1)  
At3g30760	chr3:012425497	0.0	W/12425497-12425980	AT3G30760.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30470.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30600.1); contains InterPro domain Protein of unknown function DUF730; (InterPro:IPR007989)  
At3g30763	chr3:012428278	0.0	C/12428278-12431476	AT3G30763.1  mRNA_TE_gene  pseudo  gene_syn MIF6.14  note Transposable element gene, pseudogene, hypothetical protein, contains some similarity to pol polyprotein retrotransposons  
At3g30764	chr3:012433702	0.0	C/12433702-12435973	AT3G30764.1  mRNA_TE_gene  pseudo  gene_syn MIF6.15  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 5.4e-27 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g30766	chr3:012437099	0.0	C/12437099-12437662	AT3G30766.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, temporary automated functional assignment  
At3g30765	chr3:012438212	0.0	W/12438212-12440001	AT3G30765.1  mRNA_TE_gene  pseudo  gene_syn MIF6.17  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 4.6e-111 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota)  
At3g30767	chr3:012440599	0.0	W/12440599-12441915	AT3G30767.1  mRNA_TE_gene  pseudo  gene_syn MIF6.31  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 8.3e-46 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At3g30768	chr3:012444673	0.0	C/12444673-12444807	AT3G30768.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G30768.1p  transcript_id AT3G30768.1  protein_id AT3G30768.1p  transcript_id AT3G30768.1  
At3g30769	chr3:012445010	0.0	C/12445010-12445132	AT3G30769.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G30769.1p  transcript_id AT3G30769.1  protein_id AT3G30769.1p  transcript_id AT3G30769.1  
At3g30770	chr3:012445493	0.0	W/12445493-12445729,12445850-12445947,12446063-12446259,12446479-12446567,12446812-12446842,12446926-12448085	AT3G30770.1  CDS  go_component cytoplasm|GO:0005737||IEA  go_process translation|GO:0006412||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function ATP binding|GO:0005524||IEA  product ATP binding / aminoacyl-tRNA ligase/ nucleotide binding  note ATP binding / aminoacyl-tRNA ligase/ nucleotide binding; FUNCTIONS IN: aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (D, K and N)-like (InterPro:IPR018150); BEST Arabidopsis thaliana protein match is: ATP binding / aminoacyl-tRNA ligase/ aspartic-type endopeptidase/ nucleotide binding (TAIR:AT3G29750.1); Has 43 Blast hits to 41 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G30770.1p  transcript_id AT3G30770.1  protein_id AT3G30770.1p  transcript_id AT3G30770.1  
At3g30775	chr3:012450560	0.0	C/12450560-12451126,12449344-12449995,12449011-12449251,12448880-12448919	AT3G30775.1  CDS  gene_syn ARABIDOPSIS THALIANA PROLINE OXIDASE, AT-POX, ATPDH, ATPOX, EARLY RESPONSIVE TO DEHYDRATION 5, ERD5, PRO1, PRODH, PROLINE DEHYDROGENASE, PROLINE OXIDASE  gene ERD5  function Encodes a proline oxidase that is predicted to localize to the inner mitochondrial membrane, its mRNA expression induced by high levels of Al and by osmotic stress. The promoter contains an L-proline-inducible element.  go_component mitochondrion|GO:0005739|8776899|IDA  go_process glutamate biosynthetic process|GO:0006537||ISS  go_process proline catabolic process|GO:0006562|8776899|IGI  go_process proline catabolic process|GO:0006562||ISS  go_process hypotonic response|GO:0006971|12376638|TAS  go_process response to oxidative stress|GO:0006979|9449849|IEP  go_process response to heat|GO:0009408|8776899|IEP  go_process response to cold|GO:0009409|8776899|IEP  go_process response to water deprivation|GO:0009414|8075396|IEP  go_process drought recovery|GO:0009819|12376638|TAS  go_function proline dehydrogenase activity|GO:0004657|8776899|IMP  go_function proline dehydrogenase activity|GO:0004657|8776899|ISS  go_function proline dehydrogenase activity|GO:0004657||ISS  product ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5); proline dehydrogenase  note EARLY RESPONSIVE TO DEHYDRATION 5 (ERD5); FUNCTIONS IN: proline dehydrogenase activity; INVOLVED IN: in 8 processes; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Proline dehydrogenase (InterPro:IPR002872), Proline oxidase (InterPro:IPR015659); BEST Arabidopsis thaliana protein match is: proline oxidase, putative / osmotic stress-responsive proline dehydrogenase, putative (TAIR:AT5G38710.1); Has 1547 Blast hits to 1535 proteins in 553 species: Archae - 1; Bacteria - 795; Metazoa - 180; Fungi - 126; Plants - 52; Viruses - 2; Other Eukaryotes - 391 (source: NCBI BLink).  protein_id AT3G30775.1p  transcript_id AT3G30775.1  protein_id AT3G30775.1p  transcript_id AT3G30775.1  
At3g30778	chr3:012459185	0.0	C/12459185-12459304	AT3G30778.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G30778.1p  transcript_id AT3G30778.1  protein_id AT3G30778.1p  transcript_id AT3G30778.1  
At3g30780	chr3:012462579	0.0	C/12462579-12464771	AT3G30780.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 1.4e-100 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At3g30790	chr3:012467942	0.0	C/12467942-12471863	AT3G30790.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 1.0e-149 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays)  
At3g30800	chr3:012476150	0.0	C/12476150-12477890	AT3G30800.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 3.6e-27 P-value blast match to GB:CAB39733 rotease, reverse transcriptase, ribonuclease H, integrase (Gypsy_Ty3-element) (Drosophila buzzatii)  
At3g30802	chr3:012479457	0.0	W/12479457-12484302	AT3G30802.1  mRNA_TE_gene  pseudo  gene_syn F11I2.6  note Transposable element gene, gypsy-like retrotransposon family, has a 4.3e-311 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At3g30803	chr3:012485527	0.0	C/12485527-12487452	AT3G30803.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 2.0e-16 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At3g30805	chr3:012489715	0.0	C/12489715-12489925,12488978-12489267	AT3G30805.1  CDS  gene_syn K11J14.1  go_component cytoplasm|GO:0005737||IEA  go_process translation|GO:0006412||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_process lysyl-tRNA aminoacylation|GO:0006430||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function lysine-tRNA ligase activity|GO:0004824||IEA  go_function ATP binding|GO:0005524||IEA  product ATP binding / aminoacyl-tRNA ligase/ lysine-tRNA ligase/ nucleotide binding  note ATP binding / aminoacyl-tRNA ligase/ lysine-tRNA ligase/ nucleotide binding; FUNCTIONS IN: aminoacyl-tRNA ligase activity, nucleotide binding, lysine-tRNA ligase activity, ATP binding; INVOLVED IN: lysyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (D, K and N) (InterPro:IPR004364), Aminoacyl-tRNA synthetase, class II (D, K and N)-like (InterPro:IPR018150), Lysyl-tRNA synthetase, class II, C-terminal (InterPro:IPR018149); BEST Arabidopsis thaliana protein match is: ATKRS-1 (ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 1); ATP binding / aminoacyl-tRNA ligase/ lysine-tRNA ligase/ nucleic acid binding / nucleotide binding (TAIR:AT3G11710.1).  protein_id AT3G30805.1p  transcript_id AT3G30805.1  protein_id AT3G30805.1p  transcript_id AT3G30805.1  
At3g30810	chr3:012492823	0.0	W/12492823-12496380	AT3G30810.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G04070.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07530.1); similar to myosin heavy chain-related [Arabidopsis thaliana] (TAIR:AT4G08113.1); contains InterPro domain Protein of unknown function DUF1633; (InterPro:IPR012436)  
At3g30811	chr3:012496550	0.0	C/12496550-12500646	AT3G30811.1  mRNA_TE_gene  pseudo  gene_syn K11J14.3  note Transposable element gene, gypsy-like retrotransposon family, has a 1.2e-187 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At3g30812	chr3:012502459	0.0	C/12502459-12502638	AT3G30812.1  pseudogenic_transcript  pseudo  gene_syn K11J14.21  note pseudogene, similar to lysyl-tRNA synthetase, blastp match of 58% identity and 2.1e-10 P-value to GP|10798642|emb|CAC12821.1||AJ299251 lysyl-tRNA synthetase {Nicotiana tabacum}  
At3g30814	chr3:012504367	0.0	W/12504367-12507970	AT3G30814.1  mRNA_TE_gene  pseudo  gene_syn K11J14.5  note Transposable element gene, gypsy-like retrotransposon family, has a 7.7e-109 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus)  
At3g30813	chr3:012508310	0.0	C/12508310-12508892	AT3G30813.1  pseudogenic_transcript  pseudo  gene_syn K11J14.6  note pseudogene, similar to Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LYSRS). (Tomato), blastp match of 43% identity and 1.5e-23 P-value to SP|Q43776|SYK_LYCES Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LYSRS). (Tomato) {Lycopersicon esculentum}  
At3g30815	chr3:012509270	0.0	W/12509270-12510646	AT3G30815.1  mRNA_TE_gene  pseudo  gene_syn K11J14.7  note Transposable element gene, copia-like retrotransposon family, has a 5.4e-34 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At3g30817	chr3:012511289	0.0	C/12511289-12511589	AT3G30817.1  pseudogenic_transcript  pseudo  gene_syn K11J14.8  note pseudogene, similar to LYSYL tRNA SYNTHETASE, blastp match of 69% identity and 1.2e-35 P-value to GP|19068778|emb|CAD25246.1||AL590444 LYSYL tRNA SYNTHETASE {Encephalitozoon cuniculi}  
At3g30816	chr3:012511659	0.0	W/12511659-12513384	AT3G30816.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28120.1)  
At3g30818	chr3:012514117	0.0	C/12514117-12515169	AT3G30818.1  mRNA_TE_gene  pseudo  gene_syn K11J14.10  note Transposable element gene, copia-like retrotransposon family, has a 2.4e-94 P-value blast match to reverse transcriptase (Ty1_Copia-element) (Arabidopsis thaliana)  
At3g30819	chr3:012519334	0.0	C/12519334-12524170	AT3G30819.1  mRNA_TE_gene  pseudo  gene_syn K11J14.14  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 6.0e-78 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g30821	chr3:012524492	0.0	W/12524492-12528871	AT3G30821.1  mRNA_TE_gene  pseudo  gene_syn K11J14.23  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.7e-81 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g30820	chr3:012529843	0.0	W/12529843-12530120,12530201-12530480,12530576-12531235	AT3G30820.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14000.1); Has 18 Blast hits to 16 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 2; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G30820.1p  transcript_id AT3G30820.1  protein_id AT3G30820.1p  transcript_id AT3G30820.1  
At3g30825	chr3:012532940	0.0	W/12532940-12536466	AT3G30825.1  mRNA_TE_gene  pseudo  gene_syn K11J14.17  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.3e-219 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g30827	chr3:012537688	0.0	W/12537688-12538749	AT3G30827.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At3g30830	chr3:012539534	0.0	C/12539534-12541519	AT3G30830.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 6.8e-26 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At3g30831	chr3:012542475	0.0	C/12542475-12546242	AT3G30831.1  mRNA_TE_gene  pseudo  gene_syn K11J14.25  note Transposable element gene, copia-like retrotransposon family, has a 3.0e-263 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At3g30832	chr3:012547923	0.0	C/12547923-12549512	AT3G30832.1  mRNA_TE_gene  pseudo  gene_syn K11J14.30  note Transposable element gene, copia-like retrotransposon family, has a 4.7e-138 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At3g30833	chr3:012550247	0.0	C/12550247-12554744	AT3G30833.1  mRNA_TE_gene  pseudo  gene_syn K11J14.22  note Transposable element gene, gypsy-like retrotransposon family, has a 3.7e-188 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At3g30834	chr3:012555934	0.0	C/12555934-12557495	AT3G30834.1  mRNA_TE_gene  pseudo  gene_syn K11J14.15  note Transposable element gene, copia-like retrotransposon family, has a 1.2e-90 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At3g30836	chr3:012563428	0.0	C/12563428-12566928	AT3G30836.1  mRNA_TE_gene  pseudo  gene_syn K11J14.24  note Transposable element gene, CACTA-like transposase family (Tnp1/En/Spm), has a 7.5e-125 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)  
At3g30837	chr3:012567174	0.0	C/12567174-12569997	AT3G30837.1  mRNA_TE_gene  pseudo  gene_syn K11J14.20  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 1.8e-261 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At3g30835	chr3:012571103	0.0	C/12571103-12571932	AT3G30835.1  pseudogenic_transcript  pseudo  gene_syn K11J14.26  note pseudogene, hypothetical protein  
At3g30839	chr3:012575631	0.0	W/12575631-12576593	AT3G30839.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.2e-11 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At3g30838	chr3:012579885	0.0	C/12579885-12585786	AT3G30838.1  mRNA_TE_gene  pseudo  gene_syn MJI6.1  note Transposable element gene, gypsy-like retrotransposon family, has a 2.2e-163 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At3g30840	chr3:012588936	0.0	C/12588936-12589026,12588452-12588537	AT3G30840.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G30840.1p  transcript_id AT3G30840.1  protein_id AT3G30840.1p  transcript_id AT3G30840.1  
At3g30841	chr3:012591595	0.0	W/12591595-12591906,12591984-12592129,12592207-12592483,12592568-12592840,12592922-12593401	AT3G30841.1  CDS  gene_syn MJI6.21  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  product 2,3-biphosphoglycerate-independent phosphoglycerate mutase-related / phosphoglyceromutase-related  note 2,3-biphosphoglycerate-independent phosphoglycerate mutase-related / phosphoglyceromutase-related; FUNCTIONS IN: catalytic activity, metal ion binding; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cofactor-independent phosphoglycerate mutase, archaeal (InterPro:IPR004456), Metalloenzyme (InterPro:IPR006124), Alkaline-phosphatase-like, core domain (InterPro:IPR017850); BEST Arabidopsis thaliana protein match is: catalytic/ metal ion binding / phosphoglycerate mutase (TAIR:AT4G09520.1); Has 534 Blast hits to 533 proteins in 195 species: Archae - 193; Bacteria - 213; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).  protein_id AT3G30841.1p  transcript_id AT3G30841.1  protein_id AT3G30841.1p  transcript_id AT3G30841.1  
At3g30842	chr3:012600125	0.0	C/12600125-12600432,12599922-12600042,12599687-12599775,12599063-12599147,12598799-12598958,12598649-12598725,12598426-12598570,12598038-12598339,12597350-12597948,12597104-12597264,12596797-12597015,12596494-12596604,12596315-12596418,12595911-12596243,12595543-12595818,12595383-12595466,12595175-12595308,12594698-12595097,12594342-12594596,12593959-12594216	AT3G30842.1  CDS  gene_syn ATPDR10, MJI6.16, PDR10, PLEIOTROPIC DRUG RESISTANCE 10  gene PDR10  go_component membrane|GO:0016020||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATPase activity|GO:0016887||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process multidrug transport|GO:0006855|16506311|ISS  product PDR10 (PLEIOTROPIC DRUG RESISTANCE 10); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding  note PLEIOTROPIC DRUG RESISTANCE 10 (PDR10); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: multidrug transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: PDR12 (PLEIOTROPIC DRUG RESISTANCE 12); ATPase, coupled to transmembrane movement of substances (TAIR:AT1G15520.1); Has 211543 Blast hits to 152137 proteins in 2461 species: Archae - 4514; Bacteria - 150291; Metazoa - 7770; Fungi - 4871; Plants - 2799; Viruses - 4; Other Eukaryotes - 41294 (source: NCBI BLink).  protein_id AT3G30842.1p  transcript_id AT3G30842.1  protein_id AT3G30842.1p  transcript_id AT3G30842.1  
At3g30844	chr3:012602729	0.0	C/12602729-12606196	AT3G30844.1  mRNA_TE_gene  pseudo  gene_syn MJI6.3  note Transposable element gene, copia-like retrotransposon family, has a 8.6e-95 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)  
At3g30843	chr3:012607271	0.0	C/12607271-12608250	AT3G30843.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G08056.1); similar to Integrase, catalytic re (GB:ABE86211.1)  
At3g30846	chr3:012614651	0.0	C/12614651-12619019	AT3G30846.1  mRNA_TE_gene  pseudo  gene_syn MJI6.5  note Transposable element gene, gypsy-like retrotransposon family, has a 1.0e-303 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At3g30847	chr3:012622014	0.0	C/12622014-12622528	AT3G30847.1  pseudogenic_transcript  pseudo  gene_syn MJI6.2  note pseudogene, hypothetical protein  
At3g30845	chr3:012624437	0.0	C/12624437-12624754	AT3G30845.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G30845.1p  transcript_id AT3G30845.1  protein_id AT3G30845.1p  transcript_id AT3G30845.1  
At3g30848	chr3:012626126	0.0	W/12626126-12626840	AT3G30848.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G31915.1); similar to hypothetical protein 26.t00020 [Brassica oleracea] (GB:ABD65000.1)  
At3g30849	chr3:012629618	0.0	W/12629618-12629719	AT3G30849.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G30849.1p  transcript_id AT3G30849.1  protein_id AT3G30849.1p  transcript_id AT3G30849.1  
At3g30852	chr3:012633709	0.0	C/12633709-12635506	AT3G30852.1  mRNA_TE_gene  pseudo  gene_syn MJI6.9  note Transposable element gene, pseudogene, similar to putative non-LTR retroelement reverse transcriptase, blastp match of 22% identity and 7.8e-07 P-value to GP|10140689|gb|AAG13524.1|AC068924_29|AC068924 putative non-LTR retroelement reverse transcriptase {Oryza sativa (japonica cultivar-group)}  
At3g30859	chr3:012637092	0.0	W/12637092-12637895	AT3G30859.1  mRNA_TE_gene  pseudo  gene_syn MJI6.10  note Transposable element gene, Mutator-like transposase family, has a 1.6e-42 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g30867	chr3:012646169	0.0	W/12646169-12647549	AT3G30867.1  pseudogenic_transcript  pseudo  gene_syn MJI6.18  note pseudogene, putative SNF8 protein homolog, similar to SNF8 protein homolog GB:T04827 GI:7488343 from (Arabidopsis thaliana); blastp match of 70% identity and 4.2e-25 P-value to GP|5670007|gb|AAD46560.1||AF156102 ELL complex EAP30 subunit {Homo sapiens}  
At3g30875	chr3:012647725	0.0	C/12647725-12654422	AT3G30875.1  pseudogenic_transcript  pseudo  gene_syn MJI6.22  note pseudogene, putative multidrug resistance protein, similar to multidrug resistance protein 1 homolog GB:T06165 GI:7442649 from (Hordeum vulgare); blastp match of 54% identity and 0. P-value to GP|2292907|emb|CAA71179.1||Y10099 P-glycoprotein homologue {Hordeum vulgare subsp. vulgare}  
At3g30885	chr3:012656980	0.0	W/12656980-12657779	AT3G30885.1  pseudogenic_transcript  pseudo  gene_syn MJI6.19  note pseudogene, putative phosphate/phosphoenolpyruvate translocator precursor, similar to phosphate/phosphoenolpyruvate translocator precursor GB:AAB40646 GI:1778141 from (Arabidopsis thaliana)  
At3g31005	chr3:012662598	0.0	C/12662598-12670958	AT3G31005.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G66520; PDE194 (PIGMENT DEFECTIVE 194); formyltetrahydrofolate deformylase/ hydroxymethyl-, formyl- and related transferase  
At3g31023	chr3:012663148	0.0	C/12663148-12666444	AT3G31023.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.0e-152 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At3g31051	chr3:012667227	0.0	W/12667227-12667370	AT3G31051.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G31051.1p  transcript_id AT3G31051.1  protein_id AT3G31051.1p  transcript_id AT3G31051.1  
At3g31068	chr3:012667704	0.0	C/12667704-12667826	AT3G31068.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G31068.1p  transcript_id AT3G31068.1  protein_id AT3G31068.1p  transcript_id AT3G31068.1  
At3g31161	chr3:012670276	0.0	W/12670276-12670499	AT3G31161.1  pseudogenic_transcript  pseudo  gene_syn T22P15.1  note pseudogene, hypothetical protein  
At3g31300	chr3:012674427	0.0	W/12674427-12674618	AT3G31300.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G32903.1)  
At3g31310	chr3:012677228	0.0	W/12677228-12678717	AT3G31310.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G60930.1)  
At3g31312	chr3:012679591	0.0	C/12679591-12680669	AT3G31312.1  mRNA_TE_gene  pseudo  gene_syn T22B15.3  note Transposable element gene, gypsy-like retrotransposon family, has a 3.1e-46 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At3g31314	chr3:012681684	0.0	C/12681684-12683179	AT3G31314.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 2.3e-23 P-value blast match to At5g59620.1/14-257 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At3g31317	chr3:012685821	0.0	C/12685821-12691103	AT3G31317.1  mRNA_TE_gene  pseudo  gene_syn T22B15.6  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 6.9e-32 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At3g31320	chr3:012694627	0.0	W/12694627-12696002	AT3G31320.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G40133.1); similar to hypothetical protein 31.t00084 [Brassica oleracea] (GB:ABD65102.1)  
At3g31330	chr3:012697412	0.0	C/12697412-12697778	AT3G31330.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G34855.1)  
At3g31340	chr3:012698079	0.0	W/12698079-12700757	AT3G31340.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 7.3e-111 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g31350	chr3:012702587	0.0	W/12702587-12702672,12702730-12702785,12702864-12703222	AT3G31350.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: fruit; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G31350.1p  transcript_id AT3G31350.1  protein_id AT3G31350.1p  transcript_id AT3G31350.1  
At3g31355	chr3:012704091	0.0	C/12704091-12704807	AT3G31355.1  mRNA_TE_gene  pseudo  gene_syn T22B15.10  note Transposable element gene, pseudogene, hypothetical protein, similar to putative retroelement pol polyprotein GB:AAD25683 GI:6598522 from (Arabidopsis thaliana)  
At3g31356	chr3:012708257	0.0	C/12708257-12711435	AT3G31356.1  mRNA_TE_gene  pseudo  gene_syn T22B15.12  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.8e-06 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g31357	chr3:012713010	0.0	W/12713010-12713628	AT3G31357.1  mRNA_TE_gene  pseudo  gene_syn T22B15.56  note Transposable element gene, pseudogene, hypothetical protein, similar to putative Athila retroelement ORF1 protein GB:AAD15359 from (Arabidopsis thaliana)  
At3g31358	chr3:012713992	0.0	C/12713992-12716114	AT3G31358.1  mRNA_TE_gene  pseudo  gene_syn T22B15.13  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.8e-151 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g31359	chr3:012716833	0.0	C/12716833-12722775	AT3G31359.1  mRNA_TE_gene  pseudo  gene_syn T22B15.14  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.7e-77 P-value blast match to gb|AAL06419.1|AF378075_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At3g31360	chr3:012723412	0.0	C/12723412-12724422	AT3G31360.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.2e-25 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g31365	chr3:012725745	0.0	C/12725745-12729587	AT3G31365.1  mRNA_TE_gene  pseudo  gene_syn T22B15.16  note Transposable element gene, pseudogene, putative helicase, similar to putative helicase GB:AAD15468 GI:4263825 from (Arabidopsis thaliana); blastp match of 34% identity and 8.2e-111 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)}  
At3g31367	chr3:012735171	0.0	C/12735171-12737948	AT3G31367.1  mRNA_TE_gene  pseudo  gene_syn T22B15.17  note Transposable element gene, gypsy-like retrotransposon family, has a 1.1e-71 P-value blast match to GB:226407 retrotransposon del1-46 (Gypsy_Ty3-element) (Lilium henryi)  
At3g31370	chr3:012739412	0.0	W/12739412-12740362	AT3G31370.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G31915.1); similar to hypothetical protein 24.t00018 [Brassica oleracea] (GB:ABD64940.1)  
At3g31373	chr3:012742861	0.0	W/12742861-12745393	AT3G31373.1  mRNA_TE_gene  pseudo  gene_syn T22B15.20  note Transposable element gene, pseudogene, putative replication protein, similar to putative replication protein GB:BAB02796 from (Arabidopsis thaliana)  
At3g31374	chr3:012745879	0.0	W/12745879-12747374	AT3G31374.1  mRNA_TE_gene  pseudo  gene_syn T22B15.46  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 7.1e-31 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g31375	chr3:012748365	0.0	W/12748365-12752403	AT3G31375.1  mRNA_TE_gene  pseudo  gene_syn T22B15.21  note Transposable element gene, gypsy-like retrotransposon family, has a 1.1e-98 P-value blast match to T22B15 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)  
At3g31377	chr3:012753386	0.0	W/12753386-12754761	AT3G31377.1  mRNA_TE_gene  pseudo  gene_syn T22B15.33  note Transposable element gene, pseudogene, putative replication protein A1, similar to putative replication protein A1 GB:AAD32756 GI:4895168 from (Arabidopsis thaliana)  
At3g31380	chr3:012758024	0.0	W/12758024-12758958	AT3G31380.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 4.2e-20 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At3g31390	chr3:012760805	0.0	C/12760805-12762223	AT3G31390.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.6e-31 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g31395	chr3:012762661	0.0	W/12762661-12766244	AT3G31395.1  mRNA_TE_gene  pseudo  gene_syn T22B15.24  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.3e-23 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At3g31400	chr3:012768984	0.0	W/12768984-12769103,12769392-12769481	AT3G31400.1  CDS  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G32120.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G31400.1p  transcript_id AT3G31400.1  protein_id AT3G31400.1p  transcript_id AT3G31400.1  
At3g31401	chr3:012770519	0.0	C/12770519-12770650	AT3G31401.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G31401.1p  transcript_id AT3G31401.1  protein_id AT3G31401.1p  transcript_id AT3G31401.1  
At3g31402	chr3:012773535	0.0	C/12773535-12773539,12773204-12773355,12772998-12773096,12772654-12772914,12772280-12772479,12771506-12771868,12770931-12771032	AT3G31402.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: protein dimerization (TAIR:AT2G06541.2).  protein_id AT3G31402.1p  transcript_id AT3G31402.1  protein_id AT3G31402.1p  transcript_id AT3G31402.1  
At3g31402	chr3:012773535	0.0	C/12773535-12773539,12773204-12773355,12773027-12773096,12772654-12772697,12772280-12772479,12771506-12771868,12770931-12771032	AT3G31402.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: protein dimerization (TAIR:AT2G06541.2).  protein_id AT3G31402.2p  transcript_id AT3G31402.2  protein_id AT3G31402.2p  transcript_id AT3G31402.2  
At3g31403	chr3:012776573	0.0	W/12776573-12778649	AT3G31403.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 6.0e-61 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g31406	chr3:012779538	0.0	W/12779538-12780473	AT3G31406.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G29610.1)  
At3g31410	chr3:012780479	0.0	C/12780479-12783581	AT3G31410.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G32140.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048)  
At3g31415	chr3:012784200	0.0	C/12784200-12784490	AT3G31415.1  CDS  go_function magnesium ion binding|GO:0000287||IEA  go_function lyase activity|GO:0016829||IEA  go_component cellular_component|GO:0005575||ND  product terpene synthase/cyclase family protein  note terpene synthase/cyclase family protein; FUNCTIONS IN: lyase activity, magnesium ion binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949); BEST Arabidopsis thaliana protein match is: terpene synthase/cyclase family protein (TAIR:AT3G32030.1); Has 397 Blast hits to 395 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 396; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G31415.1p  transcript_id AT3G31415.1  protein_id AT3G31415.1p  transcript_id AT3G31415.1  
At3g31425	chr3:012784676	0.0	C/12784676-12786759	AT3G31425.1  pseudogenic_transcript  pseudo  gene_syn T22C2.1  note pseudogene, putative (+)-delta-cadinene synthase, similar to 5-epi-aristolochene syntase-like protein; terpene synthase from GI:9294130 (Arabidopsis thaliana); blastp match of 38% identity and 1.8e-47 P-value to GP|9864189|gb|AAG01339.1||AF288465 terpene synthase {Citrus junos}  
At3g31420	chr3:012787914	0.0	C/12787914-12792017	AT3G31420.1  mRNA_TE_gene  pseudo  gene_syn T22C2.2  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 9.2e-45 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)  
At3g31422	chr3:012792940	0.0	C/12792940-12795066	AT3G31422.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 4.9e-70 P-value blast match to GB:CAA38906 Tam3-transposase (hAT-element) (Antirrhinum majus)  
At3g31430	chr3:012795861	0.0	C/12795861-12796871	AT3G31430.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18636.1); Has 200 Blast hits to 200 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G31430.1p  transcript_id AT3G31430.1  protein_id AT3G31430.1p  transcript_id AT3G31430.1  
At3g31440	chr3:012800324	0.0	C/12800324-12806091	AT3G31440.1  mRNA_TE_gene  pseudo  gene_syn T22C2.4  note Transposable element gene, pseudogene, similar to putative helicase, blastp match of 41% identity and 1.3e-254 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)}  
At3g31442	chr3:012803911	0.0	C/12803911-12804796	AT3G31442.1  mRNA_TE_gene  pseudo  gene_syn SADHU NON-CODING RETROTRANSPOSON, SADHU7-2  gene SADHU7-2  function Member of Sadhu non-coding retrotransposon family  note Transposable element gene  
At3g31450	chr3:012810851	0.0	W/12810851-12813187	AT3G31450.1  mRNA_TE_gene  pseudo  gene_syn T22C2.5  note Transposable element gene, Mutator-like transposase family, has a 9.3e-64 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g31460	chr3:012814911	0.0	C/12814911-12815570	AT3G31460.1  mRNA_TE_gene  pseudo  note Transposable element gene, retroelement pol polyprotein -related  
At3g31470	chr3:012818516	0.0	C/12818516-12820597	AT3G31470.1  mRNA_TE_gene  pseudo  gene_syn T22C2.8  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.7e-22 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At3g31475	chr3:012820631	0.0	W/12820631-12821686	AT3G31475.1  mRNA_TE_gene  pseudo  gene_syn T22C2.9  note Transposable element gene, pseudogene, similar to putative non-LTR retroelement reverse transcriptase, blastp match of 26% identity and 1.4e-10 P-value to GP|10140689|gb|AAG13524.1|AC068924_29|AC068924 putative non-LTR retroelement reverse transcriptase {Oryza sativa (japonica cultivar-group)}  
At3g31490	chr3:012825337	0.0	C/12825337-12827347	AT3G31490.1  mRNA_TE_gene  pseudo  gene_syn T22C2.10  note Transposable element gene, gypsy-like retrotransposon family, has a 1.2e-123 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At3g31500	chr3:012828688	0.0	W/12828688-12830731	AT3G31500.1  mRNA_TE_gene  pseudo  gene_syn T22C2.11  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.9e-82 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g31510	chr3:012833343	0.0	W/12833343-12835647	AT3G31510.1  pseudogenic_transcript  pseudo  gene_syn T22C2.13  note pseudogene, hypothetical protein  
At3g31530	chr3:012838149	0.0	W/12838149-12842889	AT3G31530.1  mRNA_TE_gene  pseudo  gene_syn T22C2.15  note Transposable element gene, gypsy-like retrotransposon family, has a 7.7e-172 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays)  
At3g31540	chr3:012843392	0.0	C/12843392-12845748	AT3G31540.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G06603.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G34590.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G60930.1); similar to hypothetical protein 27.t00126 [Brassica oleracea] (GB:ABD65062.1)  
At3g31630	chr3:012852502	0.0	W/12852502-12859789	AT3G31630.1  mRNA_TE_gene  pseudo  gene_syn T1O13.2  note Transposable element gene, gypsy-like retrotransposon family, has a 4.6e-319 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At3g31720	chr3:012861831	0.0	W/12861831-12864017	AT3G31720.1  mRNA_TE_gene  pseudo  gene_syn T1O13.3  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 5.0e-12 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)  
At3g31810	chr3:012868798	0.0	W/12868798-12870124	AT3G31810.1  mRNA_TE_gene  pseudo  gene_syn T1O13.4  note Transposable element gene, pseudogene, hypothetical protein  
At3g31900	chr3:012875071	0.0	W/12875071-12875104,12875381-12875652,12875763-12875894,12875977-12876058,12876645-12876890,12876941-12877024,12877091-12877422	AT3G31900.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G32280.1); Has 116 Blast hits to 114 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 34; Plants - 65; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G31900.1p  transcript_id AT3G31900.1  protein_id AT3G31900.1p  transcript_id AT3G31900.1  
At3g31902	chr3:012879031	0.0	C/12879031-12879375	AT3G31902.1  pseudogenic_transcript  pseudo  gene_syn T1O13.23  note pseudogene, MADS-box protein, blastp match of 47% identity and 2.3e-06 P-value to GP|4103757|gb|AAD03486.1||AF027376 MADS1 {Corylus avellana}  
At3g31903	chr3:012879906	0.0	W/12879906-12880236	AT3G31903.1  pseudogenic_transcript  pseudo  gene_syn T1O13.21  note pseudogene, transcription factor (fragment), blastp match of 40% identity and 1.6e-06 P-value to GP|15290141|dbj|BAB63832.1||AP003627 P0459B04.16 {Oryza sativa (japonica cultivar-group)}  
At3g31904	chr3:012885376	0.0	C/12885376-12891812	AT3G31904.1  mRNA_TE_gene  pseudo  gene_syn T1O13.9  note Transposable element gene, pseudogene, helicase, blastp match of 41% identity and 4.0e-264 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)}  
At3g31905	chr3:012892774	0.0	C/12892774-12895070	AT3G31905.1  mRNA_TE_gene  pseudo  gene_syn T1O13.10  note Transposable element gene, pseudogene, hypothetical protein  
At3g31906	chr3:012896942	0.0	W/12896942-12898508	AT3G31906.1  pseudogenic_transcript  pseudo  gene_syn T1O13.11  note pseudogene, ATP-dependent CLPB protein, blastp match of 74% identity and 9.9e-102 P-value to GP|9651530|gb|AAF91178.1|AF203700_1|AF203700 ClpB {Phaseolus lunatus}  
At3g31908	chr3:012902409	0.0	C/12902409-12903522	AT3G31908.1  pseudogenic_transcript  pseudo  gene_syn T1O13.12  note pseudogene, similar to aintegumenta-like protein, blastp match of 58% identity and 3.6e-07 P-value to GP|21304225|gb|AAL47210.1||AY062179 aintegumenta-like protein {Oryza sativa}  
At3g31909	chr3:012906598	0.0	W/12906598-12907864	AT3G31909.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 3.0e-54 P-value blast match to Q9S9L1 /206-367 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g31910	chr3:012909407	0.0	C/12909407-12909614,12908835-12909319,12908396-12908713,12908028-12908165,12907877-12907927	AT3G31910.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1985 (InterPro:IPR015410); BEST Arabidopsis thaliana protein match is: Ulp1 protease family protein (TAIR:AT5G45570.1); Has 221 Blast hits to 211 proteins in 56 species: Archae - 0; Bacteria - 55; Metazoa - 45; Fungi - 3; Plants - 63; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT3G31910.1p  transcript_id AT3G31910.1  protein_id AT3G31910.1p  transcript_id AT3G31910.1  
At3g31915	chr3:012909851	0.0	W/12909851-12912291	AT3G31915.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G31370.1); similar to hypothetical protein 24.t00018 [Brassica oleracea] (GB:ABD64940.1)  
At3g31920	chr3:012920070	0.0	C/12920070-12926590	AT3G31920.1  mRNA_TE_gene  pseudo  gene_syn T1O13.19  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 3.0e-163 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At3g31930	chr3:012928342	0.0	W/12928342-12929220	AT3G31930.1  mRNA_TE_gene  pseudo  gene_syn T1O13.1  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28940.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At3g31935	chr3:012933228	0.0	W/12933228-12938295	AT3G31935.1  mRNA_TE_gene  pseudo  gene_syn F8N14.4  note Transposable element gene, gypsy-like retrotransposon family, has a 9.3e-157 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At3g31940	chr3:012940786	0.0	W/12940786-12941768	AT3G31940.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07460.1)  
At3g31945	chr3:012942324	0.0	C/12942324-12949134	AT3G31945.1  mRNA_TE_gene  pseudo  gene_syn F8N14.10  note Transposable element gene, gypsy-like retrotransposon family, has a 5.5e-171 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At3g31950	chr3:012950113	0.0	W/12950113-12950636,12950748-12950852,12950928-12951401,12951837-12951878,12952031-12952096,12952164-12952304,12952422-12952593	AT3G31950.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: nucleic acid binding / zinc ion binding (TAIR:AT4G06526.1); Has 13 Blast hits to 13 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G31950.1p  transcript_id AT3G31950.1  protein_id AT3G31950.1p  transcript_id AT3G31950.1  
At3g31955	chr3:012954001	0.0	C/12954001-12954422	AT3G31955.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G04210.1)  
At3g31960	chr3:012954903	0.0	W/12954903-12955983	AT3G31960.1  pseudogenic_transcript  pseudo  gene_syn VPS22  function Pseudogene of AT3G31960  note similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G27040.3); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G27040.4); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G27040.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO38986.1); contains InterPro domain EAP30 (InterPro:IPR007286)  
At3g31970	chr3:012962491	0.0	C/12962491-12967061	AT3G31970.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 5.3e-294 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At3g31980	chr3:012972404	0.0	C/12972404-12976508	AT3G31980.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13250.1); similar to ATP binding / helicase [Arabidopsis thaliana] (TAIR:AT5G37110.1); similar to AT hook motif-containing protein-related [Arabidopsis thaliana] (TAIR:AT3G42100.1); similar to helicase-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD01692.1); similar to hypothetical protein 27.t00039 [Brassica oleracea] (GB:ABD65060.1); similar to hypothetical protein 31.t00030 [Brassica oleracea] (GB:ABD65117.1); contains InterPro domain Protein of unknown function DUF889, eukaryote; (InterPro:IPR010285)  
At3g31990	chr3:012978898	0.0	C/12978898-12981090	AT3G31990.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G07630.1); similar to hypothetical protein 31.t00031 [Brassica oleracea] (GB:ABD65118.1); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At3g31993	chr3:012981628	0.0	C/12981628-12982740	AT3G31993.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 3.3e-25 P-value blast match to At1g15560.1/58-302 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At3g31996	chr3:012982726	0.0	W/12982726-12983028	AT3G31996.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At3g32000	chr3:012984313	0.0	W/12984313-12987051	AT3G32000.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 5.4e-305 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g32010	chr3:012988334	0.0	W/12988334-12990208	AT3G32010.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), similar to putative transposon protein GB:CAB80809 from (Arabidopsis thaliana)  
At3g32020	chr3:012992006	0.0	W/12992006-12992614	AT3G32020.2  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At3g32023	chr3:012993299	0.0	C/12993299-12994435	AT3G32023.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 2.7e-54 P-value blast match to At1g15560.1/58-302 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At3g32021	chr3:012994952	0.0	C/12994952-12998969	AT3G32021.1  mRNA_TE_gene  pseudo  gene_syn T8O3.2  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 1.8e-154 P-value blast match to GB:AAA66266 unknown protein ORF1 transposable element En-1 (CACTA-element) (Zea mays)  
At3g32022	chr3:013003010	0.0	C/13003010-13007712	AT3G32022.1  mRNA_TE_gene  pseudo  gene_syn T8O3.3  note Transposable element gene, pseudogene, helicase, blastp match of 37% identity and 5.2e-207 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)}  
At3g32024	chr3:013008566	0.0	C/13008566-13009829	AT3G32024.1  mRNA_TE_gene  pseudo  gene_syn T8O3.4  note Transposable element gene, pseudogene, hypothetical protein  
At3g32026	chr3:013010636	0.0	C/13010636-13011960	AT3G32026.1  mRNA_TE_gene  pseudo  gene_syn T8O3.5  note Transposable element gene, pseudogene, hypothetical protein  
At3g32027	chr3:013012603	0.0	C/13012603-13013955	AT3G32027.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At3g32028	chr3:013014606	0.0	C/13014606-13016975	AT3G32028.1  mRNA_TE_gene  pseudo  gene_syn T8O3.7  note Transposable element gene, pseudogene, replication protein A1  
At3g32033	chr3:013017167	0.0	C/13017167-13019596	AT3G32033.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 9.2e-19 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g32029	chr3:013020879	0.0	C/13020879-13022411	AT3G32029.1  mRNA_TE_gene  pseudo  gene_syn T8O3.9  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 8.2e-76 P-value blast match to gb|AAL06422.1|AF378081_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At3g32031	chr3:013024557	0.0	C/13024557-13026492	AT3G32031.1  mRNA_TE_gene  pseudo  gene_syn T8O3.10  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.0e-53 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g32032	chr3:013028679	0.0	W/13028679-13030475	AT3G32032.1  mRNA_TE_gene  pseudo  gene_syn T8O3.11  note Transposable element gene, gypsy-like retrotransposon family, has a 5.1e-65 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At3g32030	chr3:013035094	0.0	C/13035094-13035348,13034680-13034953,13034196-13034577,13033505-13033723,13033227-13033365,13032884-13033132,13032458-13032754	AT3G32030.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function lyase activity|GO:0016829||IEA  product terpene synthase/cyclase family protein  note terpene synthase/cyclase family protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase/cyclase family protein (TAIR:AT3G14490.1); Has 1079 Blast hits to 1068 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1074; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G32030.1p  transcript_id AT3G32030.1  protein_id AT3G32030.1p  transcript_id AT3G32030.1  
At3g32035	chr3:013035628	0.0	W/13035628-13036373	AT3G32035.1  mRNA_TE_gene  pseudo  gene_syn T8O3.13  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 4.3e-16 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)  
At3g32036	chr3:013040231	0.0	C/13040231-13040344	AT3G32036.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G32036.1p  transcript_id AT3G32036.1  protein_id AT3G32036.1p  transcript_id AT3G32036.1  
At3g32040	chr3:013048518	0.0	C/13048518-13049009,13047822-13048412	AT3G32040.1  CDS  go_process isoprenoid biosynthetic process|GO:0008299||IEA  product geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative  note geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative; INVOLVED IN: isoprenoid biosynthetic process; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative (TAIR:AT3G29430.1); Has 11595 Blast hits to 11591 proteins in 1671 species: Archae - 213; Bacteria - 4923; Metazoa - 223; Fungi - 270; Plants - 286; Viruses - 6; Other Eukaryotes - 5674 (source: NCBI BLink).  protein_id AT3G32040.1p  transcript_id AT3G32040.1  protein_id AT3G32040.1p  transcript_id AT3G32040.1  
At3g32043	chr3:013053130	0.0	C/13053130-13058318	AT3G32043.1  mRNA_TE_gene  pseudo  gene_syn F1M23.2  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 9.2e-40 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At3g32047	chr3:013061048	0.0	W/13061048-13061054,13061129-13062036,13062117-13062710	AT3G32047.1  CDS  gene_syn F1M23.15  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process biological_process|GO:0008150||ND  product electron carrier/ heme binding / iron ion binding / monooxygenase  note electron carrier/ heme binding / iron ion binding / monooxygenase; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, heme binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP705A13; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT2G14100.1); Has 23935 Blast hits to 23769 proteins in 1271 species: Archae - 25; Bacteria - 2173; Metazoa - 10414; Fungi - 4650; Plants - 5683; Viruses - 6; Other Eukaryotes - 984 (source: NCBI BLink).  protein_id AT3G32047.1p  transcript_id AT3G32047.1  protein_id AT3G32047.1p  transcript_id AT3G32047.1  
At3g32050	chr3:013068484	0.0	C/13068484-13068582,13068115-13068364,13067626-13067804	AT3G32050.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14780.1); Has 18 Blast hits to 18 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G32050.1p  transcript_id AT3G32050.1  protein_id AT3G32050.1p  transcript_id AT3G32050.1  
At3g32052	chr3:013069789	0.0	W/13069789-13069953	AT3G32052.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G32052.1p  transcript_id AT3G32052.1  protein_id AT3G32052.1p  transcript_id AT3G32052.1  
At3g32060	chr3:013073033	0.0	W/13073033-13074690	AT3G32060.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 4.0e-63 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g32070	chr3:013075710	0.0	W/13075710-13076285	AT3G32070.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G29700.1)  
At3g32080	chr3:013076748	0.0	C/13076748-13078338	AT3G32080.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G29710.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048)  
At3g32090	chr3:013078956	0.0	W/13078956-13079189,13079280-13079327,13079529-13079702,13079829-13079921	AT3G32090.1  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700||IEA  go_function sequence-specific DNA binding|GO:0043565||IEA  product transcription factor-related  note transcription factor-related; FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY40; transcription factor (TAIR:AT1G80840.1); Has 123 Blast hits to 123 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 123; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G32090.1p  transcript_id AT3G32090.1  protein_id AT3G32090.1p  transcript_id AT3G32090.1  
At3g32091	chr3:013080593	0.0	W/13080593-13088056	AT3G32091.1  mRNA_TE_gene  pseudo  gene_syn F1M23.10  note Transposable element gene, gypsy-like retrotransposon family, has a 1.3e-109 P-value blast match to F1M23 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)  
At3g32092	chr3:013088116	0.0	C/13088116-13091973	AT3G32092.1  mRNA_TE_gene  pseudo  gene_syn F1M23.12  note Transposable element gene, gypsy-like retrotransposon family, has a 7.1e-99 P-value blast match to F1M23-4 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)  
At3g32093	chr3:013092825	0.0	W/13092825-13093479	AT3G32093.1  mRNA_TE_gene  pseudo  gene_syn F1M23.13  note Transposable element gene, pseudogene, similar to Putative polyprotein, similar to GB:AAF07317 from (Simian immunodeficiency virus); blastp match of 54% identity and 7.9e-29 P-value to GP|18652529|gb|AAL77162.1|AC091732_13|AC091732 Putative polyprotein {Oryza sativa}  
At3g32095	chr3:013094381	0.0	W/13094381-13095857	AT3G32095.1  mRNA_TE_gene  pseudo  gene_syn F1M23.14  note Transposable element gene, pseudogene, hypothetical protein  
At3g32100	chr3:013096971	0.0	W/13096971-13097020,13097115-13097304	AT3G32100.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G32100.1p  transcript_id AT3G32100.1  protein_id AT3G32100.1p  transcript_id AT3G32100.1  
At3g32110	chr3:013097952	0.0	W/13097952-13103951	AT3G32110.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.9e-52 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)  
At3g32112	chr3:013105076	0.0	W/13105076-13108692	AT3G32112.1  mRNA_TE_gene  pseudo  gene_syn F1M23.17  note Transposable element gene, copia-like retrotransposon family, has a 1.8e-135 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At3g32115	chr3:013109258	0.0	W/13109258-13113938	AT3G32115.1  mRNA_TE_gene  pseudo  gene_syn F1M23.18  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.7e-25 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At3g32116	chr3:013116266	0.0	W/13116266-13118455	AT3G32116.1  mRNA_TE_gene  pseudo  gene_syn F1M23.19  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 5.9e-284 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g32118	chr3:013119182	0.0	W/13119182-13121222	AT3G32118.1  mRNA_TE_gene  pseudo  gene_syn F1M23.20  note Transposable element gene, pseudogene, hypothetical protein, similar to GB:S66306 from (Arabidopsis thaliana) (Plant Mol. Biol. 29 (3), 441-452 (1995))  
At3g32120	chr3:013124466	0.0	W/13124466-13124571,13124857-13124939,13125227-13125316	AT3G32120.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G31400.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G32120.1p  transcript_id AT3G32120.1  protein_id AT3G32120.1p  transcript_id AT3G32120.1  
At3g32130	chr3:013127479	0.0	W/13127479-13127869,13127912-13128165	AT3G32130.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT3G25270.1); Has 64 Blast hits to 64 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G32130.1p  transcript_id AT3G32130.1  protein_id AT3G32130.1p  transcript_id AT3G32130.1  
At3g32135	chr3:013134079	0.0	W/13134079-13136427	AT3G32135.1  mRNA_TE_gene  pseudo  gene_syn F1M23.24  note Transposable element gene, Mutator-like transposase family, has a 7.4e-59 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g32140	chr3:013138221	0.0	C/13138221-13139009	AT3G32140.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G31410.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048)  
At3g32150	chr3:013143627	0.0	W/13143627-13143736,13144023-13144140,13144246-13144489,13144572-13144825	AT3G32150.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G32190.1); Has 59 Blast hits to 59 proteins in 23 species: Archae - 0; Bacteria - 16; Metazoa - 11; Fungi - 4; Plants - 16; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT3G32150.1p  transcript_id AT3G32150.1  protein_id AT3G32150.1p  transcript_id AT3G32150.1  
At3g32160	chr3:013145440	0.0	W/13145440-13145598,13145666-13145953	AT3G32160.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43150.1); Has 24 Blast hits to 24 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G32160.1p  transcript_id AT3G32160.1  protein_id AT3G32160.1p  transcript_id AT3G32160.1  
At3g32164	chr3:013147028	0.0	C/13147028-13152346	AT3G32164.1  mRNA_TE_gene  pseudo  gene_syn F1M23.28  note Transposable element gene, gypsy-like retrotransposon family, has a 1.6e-209 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At3g32168	chr3:013157222	0.0	W/13157222-13160003	AT3G32168.1  mRNA_TE_gene  pseudo  gene_syn F1M23.3  note Transposable element gene, gypsy-like retrotransposon family, has a 9.9e-94 P-value blast match to F1M23-3 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)  
At3g32172	chr3:013160004	0.0	W/13160004-13161119	AT3G32172.1  mRNA_TE_gene  pseudo  gene_syn F9K1.1  note Transposable element gene, gypsy-like retrotransposon family, has a 8.7e-53 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At3g32176	chr3:013161120	0.0	W/13161120-13161444	AT3G32176.1  mRNA_TE_gene  pseudo  gene_syn F6H5.15  note Transposable element gene, gypsy-like retrotransposon family, has a 1.8e-16 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At3g32180	chr3:013162624	0.0	C/13162624-13162782,13162413-13162556	AT3G32180.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G32160.1); Has 34 Blast hits to 22 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G32180.1p  transcript_id AT3G32180.1  protein_id AT3G32180.1p  transcript_id AT3G32180.1  
At3g32190	chr3:013164408	0.0	C/13164408-13164557,13164012-13164328,13163650-13163969,13163278-13163567	AT3G32190.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT5G32590.1); Has 3427 Blast hits to 2785 proteins in 322 species: Archae - 42; Bacteria - 251; Metazoa - 1744; Fungi - 282; Plants - 106; Viruses - 23; Other Eukaryotes - 979 (source: NCBI BLink).  protein_id AT3G32190.1p  transcript_id AT3G32190.1  protein_id AT3G32190.1p  transcript_id AT3G32190.1  
At3g32195	chr3:013165571	0.0	W/13165571-13170335	AT3G32195.1  mRNA_TE_gene  pseudo  gene_syn F6H5.3  note Transposable element gene, gypsy-like retrotransposon family, has a 8.8e-102 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At3g32200	chr3:013171081	0.0	C/13171081-13171527	AT3G32200.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT5G32590.1); Has 16 Blast hits to 16 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G32200.1p  transcript_id AT3G32200.1  protein_id AT3G32200.1p  transcript_id AT3G32200.1  
At3g32205	chr3:013173565	0.0	C/13173565-13177241	AT3G32205.1  mRNA_TE_gene  pseudo  gene_syn F6H5.5  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.3e-22 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At3g32210	chr3:013189475	0.0	C/13189475-13191327	AT3G32210.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), similar to putative Athila retroelement ORF1 protein GB:AAD19770 GI:4388732 from (Arabidopsis thaliana)  
At3g32220	chr3:013192233	0.0	C/13192233-13192745	AT3G32220.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.5e-59 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g32223	chr3:013194999	0.0	C/13194999-13197009	AT3G32223.1  mRNA_TE_gene  pseudo  gene_syn F6H5.9  note Transposable element gene, gypsy-like retrotransposon family, has a 2.8e-124 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus)  
At3g32226	chr3:013198631	0.0	W/13198631-13202352	AT3G32226.1  mRNA_TE_gene  pseudo  gene_syn F6H5.11  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 5.2e-146 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At3g32230	chr3:013203901	0.0	W/13203901-13208938	AT3G32230.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 9.8e-150 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays)  
At3g32240	chr3:013209736	0.0	W/13209736-13212216	AT3G32240.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 4.9e-90 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At3g32250	chr3:013213926	0.0	W/13213926-13216637	AT3G32250.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.7e-106 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g32260	chr3:013219168	0.0	W/13219168-13219305,13219396-13219507,13219721-13219817,13220277-13220339,13220528-13220683,13220782-13220905,13221023-13221076,13221271-13221456	AT3G32260.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G36510.1); Has 44 Blast hits to 41 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G32260.1p  transcript_id AT3G32260.1  protein_id AT3G32260.1p  transcript_id AT3G32260.1  
At3g32270	chr3:013222099	0.0	W/13222099-13223011	AT3G32270.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07310.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At3g32275	chr3:013231439	0.0	W/13231439-13233121	AT3G32275.1  mRNA_TE_gene  pseudo  gene_syn F6H5.20  note Transposable element gene, pseudogene, hypothetical protein  
At3g32280	chr3:013233832	0.0	W/13233832-13234026,13234180-13234303,13238174-13238445,13238557-13238688,13238771-13238863,13239450-13239758,13239855-13240154	AT3G32280.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G31900.1); Has 312 Blast hits to 280 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 97; Fungi - 64; Plants - 128; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT3G32280.1p  transcript_id AT3G32280.1  protein_id AT3G32280.1p  transcript_id AT3G32280.1  
At3g32290	chr3:013241231	0.0	W/13241231-13243286	AT3G32290.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 9.0e-22 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At3g32295	chr3:013245762	0.0	W/13245762-13249019	AT3G32295.1  mRNA_TE_gene  pseudo  gene_syn F6H5.1  note Transposable element gene, gypsy-like retrotransposon family, has a 5.9e-207 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays)  
At3g32300	chr3:013249035	0.0	C/13249035-13251125	AT3G32300.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At3g32305	chr3:013253568	0.0	C/13253568-13256745	AT3G32305.1  mRNA_TE_gene  pseudo  gene_syn F6H5.25  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element)  
At3g32310	chr3:013263527	0.0	W/13263527-13264055	AT3G32310.1  pseudogenic_transcript  pseudo  gene_syn T8N9.1  note pseudogene, similar to Hypothetical protein, blastp match of 45% identity and 2.6e-33 P-value to GP|20219037|gb|AAM15781.1|AC104428_2|AC104428 Hypothetical protein {Oryza sativa (japonica cultivar-group)}  
At3g32313	chr3:013265495	0.0	C/13265495-13265805	AT3G32313.1  pseudogenic_transcript  pseudo  gene_syn T8N9.2  note pseudogene, similar to MADS-box transcription factor CDM37, blastp match of 42% identity and 4.5e-06 P-value to GP|27804365|gb|AAO22984.1||AY173059 MADS-box transcription factor CDM37 {Chrysanthemum x morifolium}  
At3g32316	chr3:013266253	0.0	W/13266253-13267125	AT3G32316.1  pseudogenic_transcript  pseudo  gene_syn T8N9.3  note pseudogene, similar to AGAMOUS homolog, blastp match of 37% identity and 1.3e-07 P-value to GP|2981133|gb|AAC06238.1||AF052571 AGAMOUS homolog {Populus balsamifera subsp. trichocarpa}  
At3g32320	chr3:013270925	0.0	C/13270925-13275593	AT3G32320.1  mRNA_TE_gene  pseudo  gene_syn T8N9.5  note Transposable element gene, pseudogene, similar to putative helicase, blastp match of 43% identity and 9.6e-170 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)}  
At3g32330	chr3:013276082	0.0	W/13276082-13276339,13276430-13277155	AT3G32330.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DNA repair protein-related  note DNA repair protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G32280.1); Has 764 Blast hits to 762 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 398; Fungi - 212; Plants - 79; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT3G32330.1p  transcript_id AT3G32330.1  protein_id AT3G32330.1p  transcript_id AT3G32330.1  
At3g32340	chr3:013278562	0.0	C/13278562-13281228	AT3G32340.1  mRNA_TE_gene  pseudo  gene_syn T8N9.7  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element)  
At3g32360	chr3:013282356	0.0	C/13282356-13287540	AT3G32360.1  mRNA_TE_gene  pseudo  gene_syn T8N9.104  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 6.8e-18 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)  
At3g32370	chr3:013289193	0.0	W/13289193-13289828	AT3G32370.1  pseudogenic_transcript  pseudo  gene_syn T8N9.9  note pseudogene, similar to Hypothetical protein, blastp match of 49% identity and 3.6e-40 P-value to GP|20219037|gb|AAM15781.1|AC104428_2|AC104428 Hypothetical protein {Oryza sativa (japonica cultivar-group)}  
At3g32371	chr3:013292015	0.0	W/13292015-13292467	AT3G32371.1  pseudogenic_transcript  pseudo  gene_syn T8N9.11  note pseudogene, similar to P0459B04.16, blastp match of 41% identity and 4.6e-09 P-value to GP|15290141|dbj|BAB63832.1||AP003627 P0459B04.16 {Oryza sativa (japonica cultivar-group)}  
At3g32373	chr3:013297852	0.0	C/13297852-13302758	AT3G32373.1  mRNA_TE_gene  pseudo  gene_syn F1D9.1  note Transposable element gene, pseudogene, similar to putative helicase, similar to helicase GI:10177991 from (Arabidopsis thaliana); blastp match of 43% identity and 3.2e-258 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)}  
At3g32375	chr3:013304501	0.0	W/13304501-13306236	AT3G32375.1  pseudogenic_transcript  pseudo  gene_syn F1D9.30  note pseudogene, putative heat shock protein, similar to heat shock protein GI:3360502 from (Plectonema boryanum); blastp match of 80% identity and 2.6e-110 P-value to GP|9651530|gb|AAF91178.1|AF203700_1|AF203700 ClpB {Phaseolus lunatus}  
At3g32377	chr3:013311477	0.0	C/13311477-13313243	AT3G32377.1  pseudogenic_transcript  pseudo  gene_syn F1D9.3  note pseudogene, similar to aintegumenta-like protein, blastp match of 59% identity and 1.0e-09 P-value to GP|21304225|gb|AAL47210.1||AY062179 aintegumenta-like protein {Oryza sativa}  
At3g32383	chr3:013314146	0.0	W/13314146-13318012	AT3G32383.1  mRNA_TE_gene  pseudo  gene_syn F1D9.6  note Transposable element gene, gypsy-like retrotransposon family, has a 5.7e-05 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At3g32385	chr3:013318348	0.0	C/13318348-13322975	AT3G32385.1  mRNA_TE_gene  pseudo  gene_syn F1D9.7  note Transposable element gene, gypsy-like retrotransposon family, has a 4.7e-188 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At3g32387	chr3:013323220	0.0	W/13323220-13325196	AT3G32387.1  pseudogenic_transcript  pseudo  gene_syn F1D9.8  note pseudogene, putative clpB heat shock protein, blastp match of 63% identity and 5.8e-148 P-value to GP|9651530|gb|AAF91178.1|AF203700_1|AF203700 ClpB {Phaseolus lunatus}  
At3g32389	chr3:013333768	0.0	W/13333768-13338330	AT3G32389.1  mRNA_TE_gene  pseudo  gene_syn F1D9.9  note Transposable element gene, pseudogene, hypothetical protein  
At3g32391	chr3:013340018	0.0	W/13340018-13341938	AT3G32391.1  mRNA_TE_gene  pseudo  gene_syn F1D9.10  note Transposable element gene, pseudogene, hypothetical protein  
At3g32393	chr3:013344240	0.0	W/13344240-13349880	AT3G32393.1  mRNA_TE_gene  pseudo  gene_syn F1D9.11  function pseudogene of Ulp1 protease family protein  note Transposable element gene, pseudogene, expressed protein  
At3g32394	chr3:013350684	0.0	W/13350684-13351341	AT3G32394.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42750.1); contains domain Hedgehog/intein (Hint) domain (SSF51294)  
At3g32395	chr3:013351859	0.0	C/13351859-13352788	AT3G32395.1  mRNA_TE_gene  pseudo  gene_syn F1D9.27  note Transposable element gene, pseudogene, hypothetical protein, similar to putative transposon protein GI:7267531 from (Arabidopsis thaliana)  
At3g32397	chr3:013353209	0.0	C/13353209-13355722	AT3G32397.1  mRNA_TE_gene  pseudo  gene_syn F1D9.12  note Transposable element gene, Mutator-like transposase family, has a 2.1e-81 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g32400	chr3:013360562	0.0	C/13360562-13360572,13359888-13360101,13359660-13359781,13359444-13359570,13359235-13359306,13358983-13359081,13358806-13358847,13358615-13358695,13358456-13358530,13358312-13358393,13358120-13358182,13357976-13357986,13357848-13357919,13357633-13357749,13357475-13357543,13357289-13357355,13356995-13357137	AT3G32400.1  CDS  go_process cellular component organization|GO:0016043||IEA  go_process actin cytoskeleton organization|GO:0030036||IEA  go_function actin binding|GO:0003779|12417149|ISS  go_function actin binding|GO:0003779|15256004|ISS  go_function actin binding|GO:0003779||ISS  product formin homology 2 domain-containing protein / FH2 domain-containing protein  note formin homology 2 domain-containing protein / FH2 domain-containing protein; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding FH2 and DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: formin homology 2 domain-containing protein / FH2 domain-containing protein (TAIR:AT2G25050.1); Has 7185 Blast hits to 4548 proteins in 329 species: Archae - 14; Bacteria - 332; Metazoa - 2992; Fungi - 742; Plants - 1725; Viruses - 466; Other Eukaryotes - 914 (source: NCBI BLink).  protein_id AT3G32400.1p  transcript_id AT3G32400.1  protein_id AT3G32400.1p  transcript_id AT3G32400.1  
At3g32405	chr3:013361797	0.0	C/13361797-13367722	AT3G32405.1  mRNA_TE_gene  pseudo  gene_syn F1D9.15  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At3g32410	chr3:013368435	0.0	C/13368435-13369133	AT3G32410.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: formin homology 2 domain-containing protein / FH2 domain-containing protein (TAIR:AT2G25050.1); Has 35 Blast hits to 35 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G32410.1p  transcript_id AT3G32410.1  protein_id AT3G32410.1p  transcript_id AT3G32410.1  
At3g32415	chr3:013369797	0.0	W/13369797-13373676	AT3G32415.1  mRNA_TE_gene  pseudo  gene_syn F1D9.17  note Transposable element gene, copia-like retrotransposon family, has a 8.1e-225 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At3g32425	chr3:013380744	0.0	C/13380744-13383624	AT3G32425.1  mRNA_TE_gene  pseudo  gene_syn F1D9.19  note Transposable element gene, Mutator-like transposase family, has a 3.5e-44 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At3g32435	chr3:013384213	0.0	C/13384213-13384773	AT3G32435.1  mRNA_TE_gene  pseudo  gene_syn F1D9.25  note Transposable element gene, pseudogene, similar to putative reverse transcriptase, similar to putative non-LTR retroelement reverse transcriptase GI:4335720 from (Arabidopsis thaliana); blastp match of 31% identity and 1.0e-11 P-value to GP|27311287|gb|AAO00713.1||AC078894 putative reverse transcriptase {Oryza sativa (japonica cultivar-group)}  
At3g32445	chr3:013384833	0.0	W/13384833-13387113	AT3G32445.1  pseudogenic_transcript  pseudo  gene_syn F1D9.20  note pseudogene, putative ribonucleotide reductase, blastp match of 60% identity and 6.2e-22 P-value to SP|O04974|LU1B_LYCPN 2-isopropylmalate synthase B (EC 4.1.3.12) (Alpha-isopropylmalate synthase B) (Alpha-IPM synthetase B). (Tomato) {Lycopersicon pennellii}  
At3g32455	chr3:013392364	0.0	W/13392364-13393527	AT3G32455.1  mRNA_TE_gene  pseudo  gene_syn F1D9.23  note Transposable element gene, Mutator-like transposase family, has a 2.5e-24 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At3g32465	chr3:013393627	0.0	C/13393627-13393749	AT3G32465.1  mRNA_TE_gene  pseudo  gene_syn F1D9.28  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 0.00075 P-value blast match to GB:AAA29366 ORF1 (LINE-element) (Anopheles gambiae)  
At3g32475	chr3:013397145	0.0	C/13397145-13399945	AT3G32475.1  mRNA_TE_gene  pseudo  gene_syn F1D9.2  note Transposable element gene, pseudogene, hypothetical protein  
At3g32677	chr3:013400635	0.0	C/13400635-13402913	AT3G32677.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 1.7e-40 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At3g32880	chr3:013404997	0.0	C/13404997-13406508	AT3G32880.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila)  
At3g32890	chr3:013407992	0.0	C/13407992-13410776	AT3G32890.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 6.3e-291 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g32893	chr3:013414236	0.0	C/13414236-13415897	AT3G32893.1  mRNA_TE_gene  pseudo  gene_syn T7B9.3  note Transposable element gene, pseudogene, hypothetical protein  
At3g32894	chr3:013416371	0.0	C/13416371-13421837	AT3G32894.1  mRNA_TE_gene  pseudo  gene_syn T7B9.4  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.6e-177 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g32905	chr3:013424037	0.0	C/13424037-13424294	AT3G32905.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G32905.1p  transcript_id AT3G32905.1  protein_id AT3G32905.1p  transcript_id AT3G32905.1  
At3g32896	chr3:013424905	0.0	W/13424905-13425045,13425407-13425664,13425750-13425833	AT3G32896.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G32896.1p  transcript_id AT3G32896.1  protein_id AT3G32896.1p  transcript_id AT3G32896.1  
At3g32902	chr3:013427803	0.0	C/13427803-13428501	AT3G32902.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G07710.1)  
At3g32903	chr3:013429387	0.0	W/13429387-13430063	AT3G32903.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G41750.1)  
At3g32895	chr3:013431016	0.0	W/13431016-13435542	AT3G32895.1  mRNA_TE_gene  pseudo  gene_syn T7B9.8  note Transposable element gene, gypsy-like retrotransposon family, has a 5.6e-155 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus)  
At3g32897	chr3:013436156	0.0	C/13436156-13438015	AT3G32897.1  mRNA_TE_gene  pseudo  gene_syn T7B9.9  note Transposable element gene, pseudogene, hypothetical protein  
At3g32898	chr3:013438976	0.0	C/13438976-13439677	AT3G32898.1  mRNA_TE_gene  pseudo  gene_syn T7B9.1  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 5.0e-61 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g32899	chr3:013442612	0.0	C/13442612-13448710	AT3G32899.1  mRNA_TE_gene  pseudo  gene_syn T7B9.12  note Transposable element gene, gypsy-like retrotransposon family, has a 7.0e-240 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At3g32904	chr3:013452574	0.0	C/13452574-13452807,13452242-13452379,13451715-13452145,13451438-13451627	AT3G32904.1  CDS  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43720.1); Has 195 Blast hits to 75 proteins in 21 species: Archae - 0; Bacteria - 16; Metazoa - 73; Fungi - 5; Plants - 58; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT3G32904.1p  transcript_id AT3G32904.1  protein_id AT3G32904.1p  transcript_id AT3G32904.1  
At3g32901	chr3:013455549	0.0	C/13455549-13457496	AT3G32901.1  mRNA_TE_gene  pseudo  gene_syn T7B9.15  note Transposable element gene, Mutator-like transposase family, has a 7.2e-81 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g32900	chr3:013458903	0.0	W/13458903-13462417	AT3G32900.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G34900.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G04010.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G44500.1); similar to hypothetical protein 26.t00072 [Brassica oleracea] (GB:ABD65017.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At3g32910	chr3:013464088	0.0	W/13464088-13465615	AT3G32910.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G03990.1); similar to Agenet domain containing protein [Brassica oleracea] (GB:ABD65016.1); contains domain HIPIP (high potential iron protein) (SSF57652); contains domain no description (G3D.4.10.490.10)  
At3g32912	chr3:013465780	0.0	C/13465780-13467015	AT3G32912.1  mRNA_TE_gene  pseudo  gene_syn T7B9.17  note Transposable element gene, Mutator-like transposase family, has a 1.1e-75 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g32914	chr3:013467652	0.0	C/13467652-13473530	AT3G32914.1  mRNA_TE_gene  pseudo  gene_syn T7B9.18  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.2e-42 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)  
At3g32917	chr3:013476577	0.0	C/13476577-13479549	AT3G32917.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.0e-114 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At3g32920	chr3:013486615	0.0	C/13486615-13486713,13486382-13486441,13486097-13486252,13485841-13485997,13485629-13485735,13485399-13485500	AT3G32920.1  CDS  go_process DNA metabolic process|GO:0006259||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function DNA binding|GO:0003677||IEA  go_function ATP binding|GO:0005524||IEA  go_function DNA-dependent ATPase activity|GO:0008094||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component cellular_component|GO:0005575||ND  go_process DNA repair|GO:0006281||ISS  go_process DNA recombination|GO:0006310||ISS  go_process SOS response|GO:0009432||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA-dependent ATPase activity|GO:0008094||ISS  product ATP binding / DNA binding / DNA-dependent ATPase/ nucleoside-triphosphatase/ nucleotide binding  note ATP binding / DNA binding / DNA-dependent ATPase/ nucleoside-triphosphatase/ nucleotide binding; FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: DNA repair, SOS response, DNA recombination, DNA metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), RecA (InterPro:IPR013765), RecA bacterial DNA recombination (InterPro:IPR001553); BEST Arabidopsis thaliana protein match is: recA family protein (TAIR:AT2G19490.1); Has 11803 Blast hits to 11748 proteins in 3144 species: Archae - 17; Bacteria - 8782; Metazoa - 0; Fungi - 2; Plants - 62; Viruses - 43; Other Eukaryotes - 2897 (source: NCBI BLink).  protein_id AT3G32920.1p  transcript_id AT3G32920.1  protein_id AT3G32920.1p  transcript_id AT3G32920.1  
At3g32925	chr3:013486981	0.0	C/13486981-13488632	AT3G32925.1  mRNA_TE_gene  pseudo  gene_syn T7B9.21  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 3.1e-13 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At3g32930	chr3:013489595	0.0	W/13489595-13489883,13489983-13490075,13490267-13490439,13490510-13490704	AT3G32930.1  CDS  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 50 Blast hits to 50 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G32930.1p  transcript_id AT3G32930.1  protein_id AT3G32930.1p  transcript_id AT3G32930.1  
At3g32940	chr3:013493391	0.0	C/13493391-13493630,13493244-13493312,13493129-13493156,13492976-13493058,13492714-13492791,13492578-13492628,13492336-13492470,13491089-13492228	AT3G32940.1  CDS  go_function RNA binding|GO:0003723||IEA  product RNA binding  note RNA binding; FUNCTIONS IN: RNA binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087); BEST Arabidopsis thaliana protein match is: splicing factor-related (TAIR:AT5G51300.3); Has 1491 Blast hits to 1318 proteins in 193 species: Archae - 0; Bacteria - 23; Metazoa - 783; Fungi - 273; Plants - 119; Viruses - 10; Other Eukaryotes - 283 (source: NCBI BLink).  protein_id AT3G32940.1p  transcript_id AT3G32940.1  protein_id AT3G32940.1p  transcript_id AT3G32940.1  
At3g32950	chr3:013495365	0.0	C/13495365-13498632	AT3G32950.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp1/En/Spm), has a 0. P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)  
At3g32960	chr3:013499677	0.0	W/13499677-13500222,13500317-13500415	AT3G32960.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1985 (InterPro:IPR015410); Has 73 Blast hits to 73 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G32960.1p  transcript_id AT3G32960.1  protein_id AT3G32960.1p  transcript_id AT3G32960.1  
At3g32962	chr3:013502564	0.0	W/13502564-13503104	AT3G32962.1  mRNA_TE_gene  pseudo  gene_syn T15D2.8  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 1.6e-49 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At3g32964	chr3:013503321	0.0	W/13503321-13506924	AT3G32964.1  mRNA_TE_gene  pseudo  gene_syn T15D2.6  note Transposable element gene, CACTA-like transposase family (Tnp1/En/Spm), has a 2.7e-181 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)  
At3g32966	chr3:013510191	0.0	W/13510191-13513415	AT3G32966.1  mRNA_TE_gene  pseudo  gene_syn T15D2.2  note Transposable element gene, pseudogene, hypothetical protein  
At3g32968	chr3:013513867	0.0	C/13513867-13515598	AT3G32968.1  mRNA_TE_gene  pseudo  gene_syn T15D2.3  note Transposable element gene, Mutator-like transposase family, has a 2.2e-26 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At3g32970	chr3:013518960	0.0	C/13518960-13520041	AT3G32970.1  mRNA_TE_gene  pseudo  gene_syn T15D2.5  note Transposable element gene, pseudogene, hypothetical protein  
At3g32975	chr3:013521212	0.0	C/13521212-13524114	AT3G32975.1  mRNA_TE_gene  pseudo  gene_syn T15D2.39  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.3e-133 P-value blast match to gb|AAL06422.1|AF378081_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At3g32980	chr3:013529722	0.0	C/13529722-13529949,13527616-13527807,13526947-13527115,13526404-13526873	AT3G32980.1  CDS  gene_syn T15D2.9  go_component cell wall|GO:0005618|14595688|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase 32 (PER32) (P32) (PRXR3)  note peroxidase 32 (PER32) (P32) (PRXR3); FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: cell wall, vacuole, membrane; EXPRESSED IN: leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: PRXCB (PEROXIDASE CB); peroxidase (TAIR:AT3G49120.1); Has 2796 Blast hits to 2782 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 42; Plants - 2725; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT3G32980.1p  transcript_id AT3G32980.1  protein_id AT3G32980.1p  transcript_id AT3G32980.1  
At3g32990	chr3:013534183	0.0	C/13534183-13536711	AT3G32990.1  pseudogenic_transcript  pseudo  gene_syn T15D2.7  note pseudogene, ATP synthase C subunit, blastp match of 86% identity and 9.3e-27 P-value to SP|P06286|ATPH_TOBAC ATP synthase C chain (EC 3.6.3.14) (Lipid-binding protein) (Subunit III). (Common tobacco) {Nicotiana tabacum}  
At3g33000	chr3:013537077	0.0	C/13537077-13537851	AT3G33000.1  pseudogenic_transcript  pseudo  gene_syn T15D2.36  note pseudogene, ATP synthase A subunit, blastp match of 68% identity and 1.3e-82 P-value to SP|P06288|ATPI_TOBAC ATP synthase A chain precursor (EC 3.6.3.14) (Subunit IV). (Belladonna, Deadly nightshade) {Atropa belladonna}  
At3g33002	chr3:013538067	0.0	C/13538067-13538776	AT3G33002.1  pseudogenic_transcript  pseudo  gene_syn T15D2.11  note pseudogene, ribosomal protein S2p family, blastp match of 84% identity and 7.7e-92 P-value to SP|Q9BBS6|RR2_LOTJA Chloroplast 30S ribosomal protein S2. {Lotus japonicus}  
At3g33004	chr3:013538953	0.0	C/13538953-13541488	AT3G33004.1  pseudogenic_transcript  pseudo  gene_syn T15D2.12  note pseudogene, DNA-directed RNA polymerase beta-chain  
At3g33005	chr3:013544797	0.0	W/13544797-13547327	AT3G33005.1  mRNA_TE_gene  pseudo  gene_syn T15D2.13  note Transposable element gene, Mutator-like transposase family, has a 5.7e-73 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g33006	chr3:013550422	0.0	W/13550422-13553113	AT3G33006.1  mRNA_TE_gene  pseudo  gene_syn T15D2.15  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.0e-261 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g33008	chr3:013553322	0.0	W/13553322-13553735	AT3G33008.1  mRNA_TE_gene  pseudo  gene_syn T15D2.25  note Transposable element gene, pseudogene, hypothetical protein  
At3g33009	chr3:013557524	0.0	C/13557524-13561767	AT3G33009.1  mRNA_TE_gene  pseudo  gene_syn T15D2.33  note Transposable element gene, pseudogene, hypothetical protein  
At3g33011	chr3:013563190	0.0	C/13563190-13566382	AT3G33011.1  mRNA_TE_gene  pseudo  gene_syn T15D2.18  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element)  
At3g33010	chr3:013568395	0.0	C/13568395-13571420	AT3G33010.1  mRNA_TE_gene  pseudo  gene_syn T15D2.17  note Transposable element gene, pseudogene, hypothetical protein  
At3g33025	chr3:013571980	0.0	W/13571980-13573065	AT3G33025.1  pseudogenic_transcript  pseudo  gene_syn T15D2.19  note pseudogene, hypothetical protein  
At3g33030	chr3:013574217	0.0	W/13574217-13575308	AT3G33030.1  mRNA_TE_gene  pseudo  gene_syn T15D2.20  note Transposable element gene, copia-like retrotransposon family, has a 7.8e-50 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea)  
At3g33035	chr3:013576128	0.0	C/13576128-13579562	AT3G33035.1  mRNA_TE_gene  pseudo  gene_syn T15D2.21  note Transposable element gene, CACTA-like transposase family (Tnp1/En/Spm), has a 2.1e-204 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)  
At3g33045	chr3:013579593	0.0	C/13579593-13580782	AT3G33045.1  mRNA_TE_gene  pseudo  gene_syn T15D2.22  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 2.0e-66 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At3g33055	chr3:013581147	0.0	W/13581147-13583974	AT3G33055.1  mRNA_TE_gene  pseudo  gene_syn T15D2.23  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.2e-282 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g33058	chr3:013601800	0.0	W/13601800-13606148	AT3G33058.1  mRNA_TE_gene  pseudo  gene_syn F23H6.17  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.4e-112 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g33085	chr3:013607765	0.0	W/13607765-13608786	AT3G33085.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At3g33083	chr3:013609396	0.0	W/13609396-13611925	AT3G33083.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 4.1e-144 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus)  
At3g33082	chr3:013612062	0.0	C/13612062-13612560	AT3G33082.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At3g33081	chr3:013614162	0.0	C/13614162-13616153	AT3G33081.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At3g33079	chr3:013617214	0.0	C/13617214-13619474	AT3G33079.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.7e-203 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g33064	chr3:013620209	0.0	W/13620209-13620925	AT3G33064.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G41770.1)  
At3g33066	chr3:013624114	0.0	C/13624114-13628913	AT3G33066.1  mRNA_TE_gene  pseudo  gene_syn F23H6.5  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 6.1e-125 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At3g33072	chr3:013631493	0.0	C/13631493-13634029	AT3G33072.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At3g33071	chr3:013635040	0.0	C/13635040-13637775	AT3G33071.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.9e-280 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g33074	chr3:013639231	0.0	C/13639231-13639834	AT3G33074.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At3g33075	chr3:013640060	0.0	C/13640060-13640618	AT3G33075.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At3g33077	chr3:013645176	0.0	W/13645176-13647900	AT3G33077.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 5.7e-286 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g33073	chr3:013648307	0.0	C/13648307-13649212	AT3G33073.1  mRNA_TE_gene  pseudo  note Transposable element gene  
At3g33067	chr3:013649581	0.0	W/13649581-13651310	AT3G33067.1  mRNA_TE_gene  pseudo  note Transposable element gene, Athila retroelement ORF2 -related, temporary automated functional assignment  
At3g33065	chr3:013658664	0.0	C/13658664-13659333	AT3G33065.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At3g33070	chr3:013663874	0.0	C/13663874-13667883	AT3G33070.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 4.8e-191 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At3g33084	chr3:013675144	0.0	W/13675144-13680170	AT3G33084.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.6e-186 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At3g33076	chr3:013739731	0.0	C/13739731-13744449	AT3G33076.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 4.2e-187 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At3g33069	chr3:013803173	0.0	W/13803173-13805953	AT3G33069.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.6e-294 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g33080	chr3:013816642	0.0	C/13816642-13817171	AT3G33080.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30650.1)  
At3g33091	chr3:013818738	0.0	C/13818738-13820758	AT3G33091.1  mRNA_TE_gene  pseudo  gene_syn T18B3.8  note Transposable element gene, pseudogene, hypothetical protein  
At3g33094	chr3:013821470	0.0	C/13821470-13821634	AT3G33094.1  mRNA_TE_gene  pseudo  gene_syn T18B3.4  note Transposable element gene, pseudogene, hypothetical protein  
At3g33097	chr3:013826473	0.0	C/13826473-13828506	AT3G33097.1  mRNA_TE_gene  pseudo  gene_syn T18B3.3  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.0e-210 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g33100	chr3:013830490	0.0	C/13830490-13833069	AT3G33100.1  mRNA_TE_gene  pseudo  gene_syn T18B3.2  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 0. P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g33103	chr3:013841651	0.0	C/13841651-13842464	AT3G33103.1  pseudogenic_transcript  pseudo  gene_syn T18B3.10  note pseudogene, cytochrome oxidase assembly protein cox-11-related, blastp match of 82% identity and 9.7e-30 P-value to GP|28301938|gb|AAO38831.1||AC091532 putative cytochrome c oxidase assembly protein {Oryza sativa (japonica cultivar-group)}  
At3g33106	chr3:013871109	0.0	W/13871109-13873859	AT3G33106.1  mRNA_TE_gene  pseudo  gene_syn T18B3.5  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 0. P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g33109	chr3:013874589	0.0	W/13874589-13876252	AT3G33109.1  mRNA_TE_gene  pseudo  gene_syn T18B3.9  note Transposable element gene, pseudogene, hypothetical protein  
At3g33112	chr3:013878668	0.0	W/13878668-13881307	AT3G33112.1  mRNA_TE_gene  pseudo  gene_syn T18B3.6  note Transposable element gene, gypsy-like retrotransposon family, has a 3.8e-100 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays)  
At3g33115	chr3:013885025	0.0	W/13885025-13890380	AT3G33115.1  mRNA_TE_gene  pseudo  gene_syn T18B3.7  note Transposable element gene, gypsy-like retrotransposon family, has a 2.9e-169 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays)  
At3g33118	chr3:013890950	0.0	C/13890950-13893141	AT3G33118.1  mRNA_TE_gene  pseudo  gene_syn T26P13.2  note Transposable element gene, pseudogene, hypothetical protein  
At3g33121	chr3:013896073	0.0	W/13896073-13897796	AT3G33121.1  mRNA_TE_gene  pseudo  gene_syn T26P13.3  note Transposable element gene, gypsy-like retrotransposon family, has a 1.0e-10 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At3g33124	chr3:013904219	0.0	W/13904219-13909256	AT3G33124.1  mRNA_TE_gene  pseudo  gene_syn T26P13.4  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 6.5e-171 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g33127	chr3:013910237	0.0	W/13910237-13912297	AT3G33127.1  mRNA_TE_gene  pseudo  gene_syn T26P13.5  note Transposable element gene, pseudogene, hypothetical protein  
At3g33130	chr3:013919325	0.0	W/13919325-13922822	AT3G33130.1  mRNA_TE_gene  pseudo  gene_syn T26P13.6  note Transposable element gene, gypsy-like retrotransposon family, has a 1.9e-256 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At3g33131	chr3:013923674	0.0	W/13923674-13924515	AT3G33131.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32610.1)  
At3g33133	chr3:013926894	0.0	W/13926894-13930704	AT3G33133.1  mRNA_TE_gene  pseudo  gene_syn T26P13.7  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.6e-222 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g33136	chr3:013934223	0.0	C/13934223-13939903	AT3G33136.1  mRNA_TE_gene  pseudo  gene_syn T26P13.8  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.5e-192 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g33139	chr3:013943130	0.0	C/13943130-13945162	AT3G33139.1  mRNA_TE_gene  pseudo  gene_syn T26P13.9  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.6e-40 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g33142	chr3:013950958	0.0	W/13950958-13954678	AT3G33142.1  mRNA_TE_gene  pseudo  gene_syn T26P13.10  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 7.5e-203 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g33145	chr3:013955339	0.0	C/13955339-13955956	AT3G33145.1  mRNA_TE_gene  pseudo  gene_syn T26P13.11  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 2.3e-33 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At3g33148	chr3:013956614	0.0	C/13956614-13959337	AT3G33148.1  mRNA_TE_gene  pseudo  gene_syn T26P13.12  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 1.5e-165 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At3g33151	chr3:013960517	0.0	C/13960517-13963601	AT3G33151.1  mRNA_TE_gene  pseudo  gene_syn T26P13.13  note Transposable element gene, CACTA-like transposase family (Tnp1/En/Spm), has a 7.6e-76 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)  
At3g33154	chr3:013965599	0.0	W/13965599-13969030	AT3G33154.1  mRNA_TE_gene  pseudo  gene_syn T14A11.3  note Transposable element gene, gypsy-like retrotransposon family, has a 6.5e-36 P-value blast match to GB:CAB39733 rotease, reverse transcriptase, ribonuclease H, integrase (Gypsy_Ty3-element) (Drosophila buzzatii)  
At3g33157	chr3:013969697	0.0	W/13969697-13972020	AT3G33157.1  mRNA_TE_gene  pseudo  gene_syn T14A11.4  note Transposable element gene, pseudogene, hypothetical protein  
At3g33160	chr3:013974397	0.0	W/13974397-13976208	AT3G33160.1  mRNA_TE_gene  pseudo  gene_syn T14A11.5  note Transposable element gene, Mutator-like transposase family, has a 1.4e-61 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g33163	chr3:013976809	0.0	W/13976809-13978162	AT3G33163.1  mRNA_TE_gene  pseudo  gene_syn T14A11.6  note Transposable element gene, pseudogene, hypothetical protein  
At3g33166	chr3:013980394	0.0	C/13980394-13982869	AT3G33166.1  mRNA_TE_gene  pseudo  gene_syn T14A11.7  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 1.2e-29 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At3g33169	chr3:013983888	0.0	C/13983888-13987724	AT3G33169.1  mRNA_TE_gene  pseudo  gene_syn T14A11.8  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 2.0e-140 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At3g33172	chr3:013997644	0.0	C/13997644-14000072	AT3G33172.1  mRNA_TE_gene  pseudo  gene_syn T14A11.9  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.4e-244 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g33175	chr3:014003225	0.0	C/14003225-14005209	AT3G33175.1  mRNA_TE_gene  pseudo  gene_syn T14A11.10  note Transposable element gene, pseudogene, hypothetical protein  
At3g33178	chr3:014006544	0.0	W/14006544-14013004	AT3G33178.1  mRNA_TE_gene  pseudo  gene_syn T14A11.11  note Transposable element gene, gypsy-like retrotransposon family, has a 7.1e-194 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At3g33181	chr3:014013961	0.0	W/14013961-14017579	AT3G33181.1  mRNA_TE_gene  pseudo  gene_syn T14A11.12  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.3e-216 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g33185	chr3:014017703	0.0	W/14017703-14019028	AT3G33185.1  mRNA_TE_gene  pseudo  gene_syn T14A11.13  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 6.6e-87 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At3g33187	chr3:014021325	0.0	C/14021325-14021392,14020687-14020885	AT3G33187.1  CDS  function Encodes a defensin-like (DEFL) family protein.  product unknown protein  note Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G33187.1p  transcript_id AT3G33187.1  protein_id AT3G33187.1p  transcript_id AT3G33187.1  
At3g33189	chr3:014028344	0.0	W/14028344-14029295	AT3G33189.1  mRNA_TE_gene  pseudo  gene_syn T14A11.14  note Transposable element gene, pseudogene, hypothetical protein  
At3g33193	chr3:014030705	0.0	W/14030705-14035993	AT3G33193.1  mRNA_TE_gene  pseudo  gene_syn T14A11.15  note Transposable element gene, gypsy-like retrotransposon family, has a 4.4e-232 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus)  
At3g33293	chr3:014037347	0.0	C/14037347-14037626,14037060-14037217	AT3G33293.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT3G30230.1); Has 17 Blast hits to 17 proteins in 3 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G33293.1p  transcript_id AT3G33293.1  protein_id AT3G33293.1p  transcript_id AT3G33293.1  
At3g33393	chr3:014038109	0.0	C/14038109-14038234,14037798-14038025	AT3G33393.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35604.1); Has 15 Blast hits to 15 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G33393.1p  transcript_id AT3G33393.1  protein_id AT3G33393.1p  transcript_id AT3G33393.1  
At3g33494	chr3:014038360	0.0	W/14038360-14038648,14038896-14038951,14039035-14039112,14039185-14039358	AT3G33494.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G33494.1p  transcript_id AT3G33494.1  protein_id AT3G33494.1p  transcript_id AT3G33494.1  
At3g33595	chr3:014039966	0.0	C/14039966-14046583	AT3G33595.1  mRNA_TE_gene  pseudo  gene_syn T4P3.17  note Transposable element gene, pseudogene, similar to putative helicase, similar to putative helicase GB:AAD20107 (Arabidopsis thaliana) and putative helicase GB:AAD32757 (Arabidopsis thaliana); blastp match of 41% identity and 3.3e-195 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)}  
At3g33585	chr3:014047985	0.0	C/14047985-14050223	AT3G33585.1  mRNA_TE_gene  pseudo  gene_syn T4P3.16  note Transposable element gene, pseudogene, hypothetical protein, similar to hypothetical proteins: GB:AAD48951 (Arabidopsis thaliana), GB:AAC95166 (Arabidopsis thaliana), GB:AAD20106 (Arabidopsis thaliana) and replication factor A1: GB:AAD32756 (Arabidopsis thaliana)  
At3g33575	chr3:014052167	0.0	W/14052167-14055691	AT3G33575.1  mRNA_TE_gene  pseudo  gene_syn T4P3.15  note Transposable element gene, pseudogene, hypothetical protein, similar to hypothetical protein which contains similarity to T. cruzi 3  end fragment (PID:g161956) GB:AAB61080 (Arabidopsis thaliana)  
At3g33572	chr3:014055707	0.0	C/14055707-14056099	AT3G33572.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07523.1)  
At3g33570	chr3:014058308	0.0	C/14058308-14059944	AT3G33570.1  mRNA_TE_gene  pseudo  gene_syn T4P3.14  note Transposable element gene, Mutator-like transposase family, has a 4.5e-70 P-value blast match to O22278 /203-375 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g33565	chr3:014060883	0.0	W/14060883-14064624	AT3G33565.1  mRNA_TE_gene  pseudo  gene_syn T4P3.18  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.0e-22 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)  
At3g33555	chr3:014068926	0.0	W/14068926-14069748	AT3G33555.1  mRNA_TE_gene  pseudo  gene_syn T4P3.13  note Transposable element gene, pseudogene, hypothetical protein, similar to hypothetical protein GB:AAD26889 (Arabidopsis thaliana)  
At3g33545	chr3:014072061	0.0	W/14072061-14073143	AT3G33545.1  mRNA_TE_gene  pseudo  gene_syn T4P3.12  note Transposable element gene, pseudogene, similar to putative non-LTR retroelement reverse transcriptase, similar to reverse transcriptase - Arabidopsis thaliana retrotransposon Ta11-1. GB:S65812 (S65812); blastp match of 33% identity and 2.9e-26 P-value to GP|10140689|gb|AAG13524.1|AC068924_29|AC068924 putative non-LTR retroelement reverse transcriptase {Oryza sativa (japonica cultivar-group)}  
At3g33537	chr3:014076385	0.0	C/14076385-14080142	AT3G33537.1  mRNA_TE_gene  pseudo  gene_syn T4P3.11  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 7.8e-289 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g33528	chr3:014083353	0.0	C/14083353-14083368,14083055-14083234,14082795-14082961	AT3G33528.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G07526.3); Has 13 Blast hits to 13 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G33528.1p  transcript_id AT3G33528.1  protein_id AT3G33528.1p  transcript_id AT3G33528.1  
At3g33530	chr3:014085354	0.0	W/14085354-14086318,14086729-14087188,14087259-14087275,14087349-14087467,14087556-14087737,14087930-14088066,14088238-14088282,14088368-14088434,14089089-14089218,14089291-14089429,14089871-14089946,14090019-14090201,14090392-14090552,14090909-14091014,14091203-14091407,14091504-14091790,14092020-14092141,14092323-14092467,14092546-14092638,14092803-14092876,14092972-14093025,14093140-14093449	AT3G33530.2  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G26610.1).  protein_id AT3G33530.2p  transcript_id AT3G33530.2  protein_id AT3G33530.2p  transcript_id AT3G33530.2  
At3g33530	chr3:014085354	0.0	W/14085354-14086318,14086729-14087211,14087349-14087467,14087556-14087737,14087930-14088066,14088368-14088434,14089089-14089218,14089291-14089429,14089871-14089946,14090019-14090201,14090392-14090552,14090909-14091014,14091203-14091407,14091504-14091790,14092020-14092141,14092323-14092467,14092546-14092638,14092803-14092876,14092972-14093025,14093140-14093449	AT3G33530.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G26610.1); Has 114 Blast hits to 95 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 73; Fungi - 4; Plants - 18; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT3G33530.1p  transcript_id AT3G33530.1  protein_id AT3G33530.1p  transcript_id AT3G33530.1  
At3g33520	chr3:014094604	0.0	C/14094604-14095476,14094457-14094520,14094293-14094377,14094157-14094207,14094012-14094074,14093791-14093920	AT3G33520.1  CDS  gene_syn ACTIN-RELATED PROTEIN 6, ARP6, ATARP6, EARLY IN SHORT DAYS 1, ESD1, SUF3, SUPPRESSOR OF FRI 3  gene ATARP6  function Encodes ACTIN-RELATED PROTEIN6 (ARP6), a putative component of a chromatin-remodeling complex. Required for both histone acetylation and methylation of the FLC chromatin in Arabidopsis. Along with PIE1 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6. Located at specific regions of the nuclear periphery. Expression throughout plants shown by in-situ and immunolocalization methods. Mutants show defects in fertility, leaf, flower and inflorescence development and shorter flowering times.  go_component nucleus|GO:0005634|11891255|TAS  go_component nucleus|GO:0005634|16155178|IDA  go_component nucleus|GO:0005634|17470967|IDA  go_component chromatin remodeling complex|GO:0016585|16495307|IMP  go_process chromatin remodeling|GO:0006338|17220196|IMP  go_process cell proliferation|GO:0008283|16141450|IMP  go_process negative regulation of flower development|GO:0009910|16141450|IMP  go_process negative regulation of flower development|GO:0009910|7482765|TAS  go_process histone methylation|GO:0016571|16495307|IMP  go_process histone acetylation|GO:0016573|16495307|IMP  go_process actin filament-based process|GO:0030029|11891255|TAS  go_function structural constituent of cytoskeleton|GO:0005200|11891255|ISS  go_function structural constituent of cytoskeleton|GO:0005200||ISS  product ATARP6; structural constituent of cytoskeleton  note ATARP6; FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: in 6 processes; LOCATED IN: nucleus, chromatin remodeling complex; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: actin, putative (TAIR:AT2G42100.1); Has 9321 Blast hits to 9120 proteins in 2023 species: Archae - 0; Bacteria - 2; Metazoa - 4601; Fungi - 1797; Plants - 1027; Viruses - 2; Other Eukaryotes - 1892 (source: NCBI BLink).  protein_id AT3G33520.1p  transcript_id AT3G33520.1  protein_id AT3G33520.1p  transcript_id AT3G33520.1  
At3g33448	chr3:014097799	0.0	W/14097799-14098531	AT3G33448.1  mRNA_TE_gene  pseudo  note Transposable element gene  
At3g33377	chr3:014100407	0.0	W/14100407-14102277	AT3G33377.1  mRNA_TE_gene  pseudo  gene_syn T4P3.7  note Transposable element gene, Mutator-like transposase family, has a 1.0e-42 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g33235	chr3:014102699	0.0	W/14102699-14105290	AT3G33235.1  mRNA_TE_gene  pseudo  gene_syn T4P3.6  note Transposable element gene, pseudogene, hypothetical protein, similar to hypothetical protein GB:AAD20105 (Arabidopsis thaliana)  
At3g35003	chr3:014105722	0.0	C/14105722-14106276	AT3G35003.1  mRNA_TE_gene  pseudo  gene_syn F21A14.13  note Transposable element gene, pseudogene, hypothetical protein  
At3g33230	chr3:014106869	0.0	W/14106869-14107511	AT3G33230.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14340.1)  
At3g33225	chr3:014108280	0.0	C/14108280-14111122	AT3G33225.1  mRNA_TE_gene  pseudo  gene_syn T4P3.5  note Transposable element gene, pseudogene, hypothetical protein, similar to hypothetical protein GB:AAD36941 (Arabidopsis thaliana)  
At3g33215	chr3:014113040	0.0	W/14113040-14114246	AT3G33215.1  mRNA_TE_gene  pseudo  gene_syn T4P3.4  note Transposable element gene, pseudogene, hypothetical protein, similar to unknown protein GB:AAD20653 (Arabidopsis thaliana) and similar to putative reverse transcriptase GB:AAD15474 (Arabidopsis thaliana)  
At3g33205	chr3:014119919	0.0	W/14119919-14122157	AT3G33205.1  pseudogenic_transcript  pseudo  gene_syn T4P3.3  note pseudogene, hypothetical protein, similar to hypothetical protein GB:AAD22504 (Arabidopsis thaliana)  
At3g33201	chr3:014122407	0.0	C/14122407-14126545	AT3G33201.1  mRNA_TE_gene  pseudo  gene_syn T4P3.2  note Transposable element gene, gypsy-like retrotransposon family, has a 2.2e-137 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At3g33197	chr3:014128922	0.0	W/14128922-14132041	AT3G33197.1  mRNA_TE_gene  pseudo  gene_syn T4P3.10  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 5.9e-130 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g34299	chr3:014133048	0.0	W/14133048-14134676	AT3G34299.1  mRNA_TE_gene  pseudo  gene_syn F21A14.2  note Transposable element gene, Mutator-like transposase family, has a 1.1e-40 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g35707	chr3:014136757	0.0	C/14136757-14138239	AT3G35707.1  mRNA_TE_gene  pseudo  gene_syn F21A14.12  note Transposable element gene, pseudogene, hypothetical protein  
At3g36411	chr3:014141584	0.0	C/14141584-14142132	AT3G36411.1  mRNA_TE_gene  pseudo  gene_syn F21A14.11  note Transposable element gene, gypsy-like retrotransposon family, has a 1.6e-09 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At3g37820	chr3:014146316	0.0	W/14146316-14151204	AT3G37820.1  mRNA_TE_gene  pseudo  gene_syn F21A14.5  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.5e-185 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g38525	chr3:014152323	0.0	W/14152323-14154341	AT3G38525.1  mRNA_TE_gene  pseudo  gene_syn F21A14.6  note Transposable element gene, pseudogene, hypothetical protein  
At3g39230	chr3:014160795	0.0	C/14160795-14163605	AT3G39230.1  mRNA_TE_gene  pseudo  gene_syn F21A14.10  note Transposable element gene, gypsy-like retrotransposon family, has a 3.1e-251 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus)  
At3g39935	chr3:014167164	0.0	W/14167164-14168635	AT3G39935.1  mRNA_TE_gene  pseudo  gene_syn F21A14.7  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 8.6e-31 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g40640	chr3:014170241	0.0	C/14170241-14170714	AT3G40640.1  mRNA_TE_gene  pseudo  gene_syn F21A14.9  note Transposable element gene, pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 36% identity and 8.9e-19 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}  
At3g41345	chr3:014171525	0.0	C/14171525-14172161	AT3G41345.1  mRNA_TE_gene  pseudo  gene_syn F21A14.8  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 2.6e-18 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At3g41761	chr3:014195917	0.0	W/14195917-14196078	AT3G41761.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G41761.1  
At3g41768	chr3:014197677	0.0	W/14197677-14199484	AT3G41768.1  rRNA  gene_syn 68121.RRNA00001  go_component cytosolic small ribosomal subunit|GO:0022627|2798101|ISS  go_process translation|GO:0006412|2798101|ISS  go_function molecular_function|GO:0003674||ND  product rRNA  note 18SrRNA  transcript_id AT3G41768.1  
At3g41979	chr3:014199753	0.0	W/14199753-14199916	AT3G41979.1  rRNA  gene_syn 68121.RRNA00002  go_component cytosolic large ribosomal subunit|GO:0022625||TAS  go_process peptide biosynthetic process|GO:0043043||TAS  go_function molecular_function|GO:0003674||ND  product rRNA  note 5SrRNA  transcript_id AT3G41979.1  
At3g42047	chr3:014227679	0.0	C/14227679-14228304	AT3G42047.1  pseudogenic_transcript  pseudo  function unknown pseudogene  
At3g42050	chr3:014232199	0.0	C/14232199-14232228,14231853-14231978,14231563-14231665,14231406-14231478,14231074-14231139,14230899-14230983,14230321-14230482,14229876-14230001,14229547-14229672,14229217-14229396,14228846-14229094	AT3G42050.1  CDS  go_component plant-type vacuole|GO:0000325|16618929|IDA  go_component vacuole|GO:0005773|14760709|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_function binding|GO:0005488||IEA  go_function hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances|GO:0016820||IEA  go_function proton-transporting ATPase activity, rotational mechanism|GO:0046961||IEA  go_component vacuolar membrane|GO:0005774|16618929|IDA  product vacuolar ATP synthase subunit H family protein  note vacuolar ATP synthase subunit H family protein; FUNCTIONS IN: binding, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: vacuolar membrane, chloroplast, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, V1 complex, subunit H, C-terminal (InterPro:IPR011987), ATPase, V1 complex, subunit H (InterPro:IPR004908), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); Has 376 Blast hits to 350 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 175; Fungi - 86; Plants - 40; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT3G42050.1p  transcript_id AT3G42050.1  protein_id AT3G42050.1p  transcript_id AT3G42050.1  
At3g42052	chr3:014235495	0.0	W/14235495-14242638	AT3G42052.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 4.0e-162 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At3g42054	chr3:014243235	0.0	W/14243235-14245161	AT3G42054.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 4.4e-63 P-value blast match to gb|AAL06420.1|AF378078_1 reverse transcriptase (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At3g42057	chr3:014246667	0.0	W/14246667-14250629	AT3G42057.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.6e-177 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At3g42060	chr3:014254072	0.0	C/14254072-14254269,14253656-14253979,14253100-14253553,14252906-14253019,14252255-14252814,14252048-14252187,14251600-14251948	AT3G42060.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product myosin heavy chain-related  note myosin heavy chain-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT2G15420.1); Has 57 Blast hits to 57 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 1; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G42060.1p  transcript_id AT3G42060.1  protein_id AT3G42060.1p  transcript_id AT3G42060.1  
At3g42065	chr3:014255659	0.0	W/14255659-14257652	AT3G42065.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.5e-45 P-value blast match to GB:CAB39733 rotease, reverse transcriptase, ribonuclease H, integrase (Gypsy_Ty3-element) (Drosophila buzzatii)  
At3g42070	chr3:014257869	0.0	W/14257869-14259092	AT3G42070.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G38380.1); similar to hypothetical protein 26.t00034 [Brassica oleracea] (GB:ABD65011.1)  
At3g42080	chr3:014260594	0.0	W/14260594-14261167	AT3G42080.1  mRNA_TE_gene  pseudo  note Transposable element gene, contains InterPro domain t-snare; (InterPro:IPR010989)  
At3g42083	chr3:014261959	0.0	W/14261959-14263704	AT3G42083.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), contains Pfam profile PF03078: ATHILA ORF-1 family  
At3g42086	chr3:014267220	0.0	C/14267220-14272239	AT3G42086.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 1.5e-98 P-value blast match to GB:AAA66266 unknown protein ORF1 transposable element En-1 (CACTA-element) (Zea mays)  
At3g42090	chr3:014274222	0.0	W/14274222-14274699	AT3G42090.1  mRNA_TE_gene  pseudo  note Transposable element gene, contains domain LIN-9 RELATED (PTHR21689); contains domain ALWAYS EARLY (PTHR21689:SF2)  
At3g42100	chr3:014275159	0.0	C/14275159-14281278	AT3G42100.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to AT hook motif-containing protein-related [Arabidopsis thaliana] (TAIR:AT1G35940.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13250.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30560.1); similar to Protein of unknown function DUF889, eukaryote [Medicago truncatula] (GB:ABE82731.1); similar to putative helicase [Oryza sativa (japonica cultivar-group)] (GB:AAV44035.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE80108.1); contains InterPro domain Protein of unknown function DUF889, eukaryote; (InterPro:IPR010285); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637)  
At3g42110	chr3:014282285	0.0	C/14282285-14284706	AT3G42110.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35920.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13270.1); similar to hypothetical protein 31.t00031 [Brassica oleracea] (GB:ABD65118.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At3g42115	chr3:014290248	0.0	C/14290248-14294330	AT3G42115.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.2e-28 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At3g42120	chr3:014295721	0.0	W/14295721-14296950	AT3G42120.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G12610.1)  
At3g42130	chr3:014298850	0.0	C/14298850-14298883,14298241-14298404	AT3G42130.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 6941 Blast hits to 2776 proteins in 346 species: Archae - 0; Bacteria - 771; Metazoa - 3098; Fungi - 376; Plants - 2008; Viruses - 49; Other Eukaryotes - 639 (source: NCBI BLink).  protein_id AT3G42130.1p  transcript_id AT3G42130.1  protein_id AT3G42130.1p  transcript_id AT3G42130.1  
At3g42140	chr3:014302879	0.0	C/14302879-14303018,14302547-14302833,14302060-14302454	AT3G42140.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding / zinc ion binding  note nucleic acid binding / zinc ion binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, petal, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G31430.1); Has 141 Blast hits to 141 proteins in 19 species: Archae - 0; Bacteria - 2; Metazoa - 10; Fungi - 8; Plants - 106; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT3G42140.1p  transcript_id AT3G42140.1  protein_id AT3G42140.1p  transcript_id AT3G42140.1  
At3g42148	chr3:014308062	0.0	C/14308062-14308169	AT3G42148.1  CDS  product unknown protein  note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G04078.1); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G42148.1p  transcript_id AT3G42148.1  protein_id AT3G42148.1p  transcript_id AT3G42148.1  
At3g42150	chr3:014310567	0.0	W/14310567-14310616,14311213-14311465	AT3G42150.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21930.1); Has 23 Blast hits to 23 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G42150.1p  transcript_id AT3G42150.1  protein_id AT3G42150.1p  transcript_id AT3G42150.1  
At3g42150	chr3:014310567	0.0	W/14310567-14310616,14311213-14311465	AT3G42150.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21930.1); Has 23 Blast hits to 23 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G42150.2p  transcript_id AT3G42150.2  protein_id AT3G42150.2p  transcript_id AT3G42150.2  
At3g42150	chr3:014310567	0.0	W/14310567-14310616,14311213-14311465	AT3G42150.3  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21930.1); Has 23 Blast hits to 23 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G42150.3p  transcript_id AT3G42150.3  protein_id AT3G42150.3p  transcript_id AT3G42150.3  
At3g42155	chr3:014313424	0.0	C/14313424-14313498,14312795-14312997,14312480-14312620,14312295-14312376	AT3G42155.1  CDS  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_component cellular_component|GO:0005575||ND  product catalytic/ hydrolase, hydrolyzing O-glycosyl compounds  note catalytic/ hydrolase, hydrolyzing O-glycosyl compounds; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); Has 558 Blast hits to 557 proteins in 93 species: Archae - 0; Bacteria - 55; Metazoa - 92; Fungi - 2; Plants - 399; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT3G42155.1p  transcript_id AT3G42155.1  protein_id AT3G42155.1p  transcript_id AT3G42155.1  
At3g42160	chr3:014314583	0.0	W/14314583-14314653,14314792-14315069,14315522-14315634	AT3G42160.1  CDS  go_component cell wall|GO:0005618||IEA  go_process cell wall modification|GO:0042545||IEA  go_function pectinesterase activity|GO:0030599||IEA  product pectinesterase-related  note pectinesterase-related; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall; CONTAINS InterPro DOMAIN/s: Pectinesterase, catalytic (InterPro:IPR000070); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT1G11370.1); Has 239 Blast hits to 239 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 239; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G42160.1p  transcript_id AT3G42160.1  protein_id AT3G42160.1p  transcript_id AT3G42160.1  
At3g42170	chr3:014321838	0.0	W/14321838-14323928	AT3G42170.1  CDS  function transposase-like gene with conserved domains from the family of hAT transposases that includes hobo from Drosophila melanogaster, Activator (Ac) from maize, and Tam3 from snapdragon but lacks several amino acids known to be essential for Ac transposition5. The DAYSLEEPER gene lacks 8 bp duplications and TIRs (a common feature of transcriptionally silent hAT transposases), however, DAYSLEEPER expression was detected, and several expressed sequence tags are available. The expression seems to be under the control of factors determining the circadian rhythm. DAYSLEEPER was isolated as a factor binding to a motif (Kubox1) present in the upstream region of the Arabidopsis DNA repair gene Ku70. Mutant plants lacking DAYSLEEPER or strongly overexpressing this gene do not develop in a normal manner.  go_process post-embryonic development|GO:0009791|16015335|IMP  go_function DNA binding|GO:0003677|16015335|IPI  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: post-embryonic development; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656); BEST Arabidopsis thaliana protein match is: DNA binding / protein dimerization (TAIR:AT1G18560.1).  protein_id AT3G42170.1p  transcript_id AT3G42170.1  protein_id AT3G42170.1p  transcript_id AT3G42170.1  
At3g42180	chr3:014328426	0.0	C/14328426-14328644,14327891-14328045,14325105-14325480,14324300-14324962	AT3G42180.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product catalytic/ transferase, transferring glycosyl groups  note catalytic/ transferase, transferring glycosyl groups; FUNCTIONS IN: transferase activity, transferring glycosyl groups, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: XGD1 (XYLOGALACTURONAN DEFICIENT 1); UDP-xylosyltransferase/ catalytic (TAIR:AT5G33290.1); Has 933 Blast hits to 931 proteins in 93 species: Archae - 0; Bacteria - 8; Metazoa - 316; Fungi - 4; Plants - 498; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT3G42180.1p  transcript_id AT3G42180.1  protein_id AT3G42180.1p  transcript_id AT3G42180.1  
At3g42180	chr3:014328426	0.0	C/14328426-14328644,14327891-14328045,14326618-14326717	AT3G42180.3  CDS  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product catalytic/ transferase, transferring glycosyl groups  note catalytic/ transferase, transferring glycosyl groups; FUNCTIONS IN: transferase activity, transferring glycosyl groups, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; Has 23 Blast hits to 23 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G42180.3p  transcript_id AT3G42180.3  protein_id AT3G42180.3p  transcript_id AT3G42180.3  
At3g42174	chr3:014330084	0.0	W/14330084-14334031	AT3G42174.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.1e-277 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)  
At3g42178	chr3:014338697	0.0	W/14338697-14344357	AT3G42178.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.1e-197 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g42179	chr3:014344962	0.0	W/14344962-14345450	AT3G42179.1  mRNA_TE_gene  pseudo  note Transposable element gene, contains InterPro domain Arabidopsis retrotransposon ORF-1 protein; (InterPro:IPR004312)  
At3g42181	chr3:014350964	0.0	W/14350964-14351182	AT3G42181.1  mRNA_TE_gene  pseudo  note Transposable element gene  
At3g42182	chr3:014352785	0.0	C/14352785-14356741	AT3G42182.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element)  
At3g42186	chr3:014356952	0.0	C/14356952-14359522	AT3G42186.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.1e-118 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)  
At3g42190	chr3:014364926	0.0	W/14364926-14371068	AT3G42190.1  mRNA_TE_gene  pseudo  gene_syn F26B15.2  note Transposable element gene, similar to cysteine-type peptidase [Arabidopsis thaliana] (TAIR:AT3G42820.1); contains domain Cysteine proteinases (SSF54001)  
At3g42200	chr3:014372702	0.0	W/14372702-14373200	AT3G42200.1  mRNA_TE_gene  pseudo  gene_syn F26B15.1  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42810.1); similar to hypothetical protein 26.t00076 [Brassica oleracea] (GB:ABD65021.1)  
At3g42203	chr3:014374609	0.0	C/14374609-14377539	AT3G42203.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 8.5e-39 P-value blast match to Q9SHN7 /450-633 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g42206	chr3:014378346	0.0	W/14378346-14380009	AT3G42206.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to pol polyprotein, blastp match of 35% identity and 3.4e-12 P-value to GP|14586969|gb|AAK70407.1|AF369930_2|AF369930 pol polyprotein {Citrus x paradisi}  
At3g42220	chr3:014380475	0.0	C/14380475-14384179	AT3G42220.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 1.9e-166 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At3g42230	chr3:014385163	0.0	C/14385163-14388016	AT3G42230.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp1/En/Spm), has a 1.0e-42 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)  
At3g42233	chr3:014388225	0.0	W/14388225-14389905	AT3G42233.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.2e-82 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)  
At3g42236	chr3:014391714	0.0	W/14391714-14394404	AT3G42236.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.7e-198 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g42240	chr3:014397330	0.0	C/14397330-14398293	AT3G42240.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G43940.1)  
At3g42245	chr3:014401324	0.0	W/14401324-14403205	AT3G42245.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.2e-95 P-value blast match to GB:AAC64917 gag-pol polyprotein (Ty1_Copia-element) (Glycine max)  
At3g42250	chr3:014403683	0.0	W/14403683-14403985	AT3G42250.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48720.1); similar to putative polyprotein [Oryza sativa (japonica cultivar-group)] (GB:AAP46257.1); similar to putative gag-pol polyprotein [Oryza sativa] (GB:AAL58228.1); similar to retrotransposon protein, putative, unclassified [Oryza sativa (japonica cultivar-group)] (GB:ABA99612.1)  
At3g42251	chr3:014406118	0.0	W/14406118-14406834	AT3G42251.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to contains similarity to Arabidopsis thaliana hypothetical protein (GB:AC004483)  
At3g42252	chr3:014407296	0.0	W/14407296-14408909	AT3G42252.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.5e-85 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g42253	chr3:014411778	0.0	W/14411778-14413179	AT3G42253.1  mRNA_TE_gene  pseudo  note Transposable element gene, Athila retroelement ORF2 -related, temporary automated functional assignment  
At3g42254	chr3:014415004	0.0	W/14415004-14415398	AT3G42254.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05560.1)  
At3g42255	chr3:014416062	0.0	W/14416062-14419442	AT3G42255.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to Hypothetical protein with similarity to putative Ac-like transposases, similar to Ac-like transposase; blastp match of 50% identity and 2.2e-60 P-value to GP|20042974|gb|AAM08782.1|AC016780_12|AC016780 Hypothetical protein with similarity to putative Ac-like transposases {Oryza sativa}  
At3g42256	chr3:014423424	0.0	C/14423424-14432589	AT3G42256.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 8.8e-238 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g42257	chr3:014434094	0.0	W/14434094-14435671	AT3G42257.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 6.0e-204 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g42258	chr3:014436561	0.0	C/14436561-14438817	AT3G42258.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 9.2e-52 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g42260	chr3:014440090	0.0	C/14440090-14441496	AT3G42260.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.3e-60 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g42270	chr3:014441782	0.0	W/14441782-14444827	AT3G42270.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 9.1e-62 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g42280	chr3:014447818	0.0	C/14447818-14448962	AT3G42280.1  mRNA_TE_gene  pseudo  gene_syn T14K23.1  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 2.3e-71 P-value blast match to At1g15560.1/58-302 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At3g42290	chr3:014449068	0.0	W/14449068-14451268	AT3G42290.1  mRNA_TE_gene  pseudo  gene_syn T14K23.2  note Transposable element gene, retrotransposon family  
At3g42300	chr3:014454332	0.0	W/14454332-14455596	AT3G42300.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42120.1)  
At3g42305	chr3:014456327	0.0	C/14456327-14459109	AT3G42305.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 1.1e-101 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays)  
At3g42310	chr3:014459818	0.0	W/14459818-14459894,14460280-14460377,14461427-14461497	AT3G42310.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 60 Blast hits to 60 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 0; Plants - 12; Viruses - 28; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G42310.1p  transcript_id AT3G42310.1  protein_id AT3G42310.1p  transcript_id AT3G42310.1  
At3g42313	chr3:014464231	0.0	W/14464231-14468082	AT3G42313.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 7.2e-227 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At3g42316	chr3:014469182	0.0	C/14469182-14470707	AT3G42316.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 1.9e-38 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)  
At3g42320	chr3:014478406	0.0	C/14478406-14482649	AT3G42320.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G64410.1); similar to hypothetical protein 27.t00039 [Brassica oleracea] (GB:ABD65060.1); contains domain HELICASE-RELATED (PTHR10492)  
At3g42330	chr3:014484419	0.0	W/14484419-14485333	AT3G42330.1  mRNA_TE_gene  pseudo  note Transposable element gene, contains InterPro domain DNA polymerase III clamp loader subunit, C-terminal; (InterPro:IPR008921)  
At3g42340	chr3:014487638	0.0	W/14487638-14488619	AT3G42340.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52960.1); similar to hypothetical protein 31.t00030 [Brassica oleracea] (GB:ABD65117.1); contains InterPro domain Protein of unknown function DUF889, eukaryote; (InterPro:IPR010285)  
At3g42350	chr3:014489927	0.0	C/14489927-14492587	AT3G42350.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G06095.1); contains domain RAS-RELATED GTPASE (PTHR11708); contains domain RAC-GTP BINDING PROTEIN (PTHR11708:SF12)  
At3g42353	chr3:014497056	0.0	C/14497056-14497541	AT3G42353.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to Mutator-like transposase  
At3g42356	chr3:014498824	0.0	W/14498824-14499696	AT3G42356.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 5.0e-15 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g42360	chr3:014500246	0.0	W/14500246-14501565	AT3G42360.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to Putative 22 kDa kafirin cluster; Ty3-Gypsy type, various predicted proteins, Arabidopsis thaliana; blastp match of 29% identity and 3.7e-07 P-value to GP|18767374|gb|AAL79340.1|AC099402_4|AC099402 Putative 22 kDa kafirin cluster; Ty3-Gypsy type {Oryza sativa}  
At3g42380	chr3:014503610	0.0	W/14503610-14503729,14503804-14503917	AT3G42380.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G42380.1p  transcript_id AT3G42380.1  protein_id AT3G42380.1p  transcript_id AT3G42380.1  
At3g42383	chr3:014504127	0.0	C/14504127-14508029	AT3G42383.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 5.1e-209 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At3g42385	chr3:014509500	0.0	W/14509500-14509760	AT3G42385.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G42385.1p  transcript_id AT3G42385.1  protein_id AT3G42385.1p  transcript_id AT3G42385.1  
At3g42386	chr3:014509932	0.0	W/14509932-14514632	AT3G42386.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 6.5e-116 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus)  
At3g42390	chr3:014518215	0.0	C/14518215-14518467,14518021-14518148	AT3G42390.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G42390.1p  transcript_id AT3G42390.1  protein_id AT3G42390.1p  transcript_id AT3G42390.1  
At3g42400	chr3:014520618	0.0	W/14520618-14522766	AT3G42400.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G33200.1); similar to hypothetical protein 31.t00031 [Brassica oleracea] (GB:ABD65118.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At3g42410	chr3:014523578	0.0	W/14523578-14526725	AT3G42410.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to replication protein-related [Arabidopsis thaliana] (TAIR:AT5G37100.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At3g42420	chr3:014527365	0.0	W/14527365-14533619	AT3G42420.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to putative helicase, various predicted proteins, including predicted Helicases.; blastp match of 36% identity and 1.7e-100 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)}  
At3g42430	chr3:014543380	0.0	W/14543380-14544510	AT3G42430.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G37045.1)  
At3g42431	chr3:014546388	0.0	W/14546388-14553611	AT3G42431.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.5e-78 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g42432	chr3:014556920	0.0	C/14556920-14558482	AT3G42432.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.4e-45 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g42433	chr3:014558641	0.0	C/14558641-14560743	AT3G42433.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 0.00033 P-value blast match to GB:AAD12998 pol polyprotein (Ty1_Copia-element) (Zea mays)  
At3g42434	chr3:014564581	0.0	W/14564581-14569779	AT3G42434.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 8.5e-111 P-value blast match to gb|AAL06419.1|AF378075_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At3g42436	chr3:014570230	0.0	W/14570230-14571625	AT3G42436.1  mRNA_TE_gene  pseudo  function pseudogene of unknown protein  note Transposable element gene  
At3g42438	chr3:014574279	0.0	W/14574279-14576753	AT3G42438.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 5.5e-79 P-value blast match to Q9S9W4 /247-408 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g42440	chr3:014577331	0.0	W/14577331-14577824	AT3G42440.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35090.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At3g42445	chr3:014581046	0.0	C/14581046-14583365	AT3G42445.1  mRNA_TE_gene  pseudo  note Transposable element gene, Athila retroelement ORF2 -related  
At3g42450	chr3:014586114	0.0	W/14586114-14588382	AT3G42450.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana] (TAIR:AT1G42630.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878)  
At3g42460	chr3:014590291	0.0	C/14590291-14591220	AT3G42460.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05570.1); similar to hypothetical protein 31.t00082 [Brassica oleracea] (GB:ABD65101.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At3g42470	chr3:014594163	0.0	C/14594163-14599355	AT3G42470.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp1/En/Spm), has a 2.0e-16 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)  
At3g42466	chr3:014599197	0.0	W/14599197-14604217	AT3G42466.1  pseudogenic_transcript  pseudo  function Pseudogene of AT2G26730; leucine-rich repeat transmembrane protein kinase, putative  
At3g42473	chr3:014607143	0.0	W/14607143-14607221,14607713-14607867	AT3G42473.1  CDS  gene_syn LCR47, Low-molecular-weight cysteine-rich 47  gene LCR47  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR47 (Low-molecular-weight cysteine-rich 47)  note Low-molecular-weight cysteine-rich 47 (LCR47); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G32619.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G42473.1p  transcript_id AT3G42473.1  protein_id AT3G42473.1p  transcript_id AT3G42473.1  
At3g42475	chr3:014609702	0.0	C/14609702-14609824	AT3G42475.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G42475.1p  transcript_id AT3G42475.1  protein_id AT3G42475.1p  transcript_id AT3G42475.1  
At3g42471	chr3:014610379	0.0	C/14610379-14613555	AT3G42471.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element)  
At3g42472	chr3:014616954	0.0	W/14616954-14617834	AT3G42472.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 5.4e-39 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At3g42474	chr3:014618794	0.0	W/14618794-14619274	AT3G42474.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 7.5e-38 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At3g42476	chr3:014620897	0.0	W/14620897-14621554	AT3G42476.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 3.8e-19 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At3g42478	chr3:014624308	0.0	W/14624308-14627037	AT3G42478.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 3.5e-62 P-value blast match to Q9S9L6 /322-461 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g42480	chr3:014628219	0.0	C/14628219-14628635	AT3G42480.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G03979.1)  
At3g42490	chr3:014629450	0.0	C/14629450-14630400	AT3G42490.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35080.1)  
At3g42500	chr3:014631289	0.0	C/14631289-14631925	AT3G42500.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G44860.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At3g42510	chr3:014632932	0.0	C/14632932-14633419	AT3G42510.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G44870.1)  
At3g42520	chr3:014633957	0.0	W/14633957-14634483	AT3G42520.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G44875.1)  
At3g42530	chr3:014635040	0.0	C/14635040-14639783	AT3G42530.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G10350.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G03970.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G44880.1); similar to hypothetical protein 23.t00036 [Brassica oleracea] (GB:ABD65624.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At3g42535	chr3:014642479	0.0	W/14642479-14644281	AT3G42535.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 2.7e-10 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At3g42540	chr3:014645107	0.0	W/14645107-14646442	AT3G42540.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G43940.1)  
At3g42542	chr3:014649989	0.0	W/14649989-14650234	AT3G42542.1  pseudogenic_transcript  pseudo  function Encodes a defensin-like (DEFL) family protein.  
At3g42545	chr3:014657060	0.0	W/14657060-14662717	AT3G42545.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 5.5e-26 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At3g42550	chr3:014669116	0.0	C/14669116-14669135,14668330-14668536,14668099-14668216,14667817-14668015,14666989-14667096,14666837-14666883,14666617-14666754,14666436-14666527,14666239-14666335,14666095-14666161,14665938-14666009,14665728-14665855	AT3G42550.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartic-type endopeptidase  note aspartic-type endopeptidase; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT1G08210.1); Has 2053 Blast hits to 2039 proteins in 254 species: Archae - 0; Bacteria - 0; Metazoa - 621; Fungi - 270; Plants - 1017; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink).  protein_id AT3G42550.1p  transcript_id AT3G42550.1  protein_id AT3G42550.1p  transcript_id AT3G42550.1  
At3g42553	chr3:014671479	0.0	W/14671479-14675564	AT3G42553.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 8.6e-22 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At3g42556	chr3:014676967	0.0	W/14676967-14677308	AT3G42556.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G51320.1); contains InterPro domain Protein of unknown function DUF321; (InterPro:IPR005529)  
At3g42557	chr3:014677796	0.0	W/14677796-14678149	AT3G42557.1  pseudogenic_transcript  pseudo  function Encodes a defensin-like (DEFL) family protein.  
At3g42560	chr3:014680265	0.0	W/14680265-14680414,14680475-14680546,14680686-14680760	AT3G42560.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36300.1); Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G42560.1p  transcript_id AT3G42560.1  protein_id AT3G42560.1p  transcript_id AT3G42560.1  
At3g42565	chr3:014683051	0.0	C/14683051-14683410	AT3G42565.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36370.1); Has 67 Blast hits to 64 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G42565.1p  transcript_id AT3G42565.1  protein_id AT3G42565.1p  transcript_id AT3G42565.1  
At3g42570	chr3:014689058	0.0	W/14689058-14689162,14690000-14690347	AT3G42570.1  CDS  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component cellular_component|GO:0005575||ND  go_function peroxidase activity|GO:0004601||ISS  product peroxidase-related  note peroxidase-related; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT3G17070.1); Has 2246 Blast hits to 2245 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2245; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G42570.1p  transcript_id AT3G42570.1  protein_id AT3G42570.1p  transcript_id AT3G42570.1  
At3g42580	chr3:014690821	0.0	W/14690821-14695927	AT3G42580.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G12100.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G45090.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At3g42590	chr3:014696258	0.0	W/14696258-14696950	AT3G42590.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G12110.1); similar to hypothetical protein 40.t00047 [Brassica oleracea] (GB:ABD65162.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050)  
At3g42600	chr3:014697763	0.0	W/14697763-14698422	AT3G42600.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G12120.1); similar to hypothetical protein 40.t00047 [Brassica oleracea] (GB:ABD65162.1); contains domain Prokaryotic type I DNA topoisomerase (SSF56712)  
At3g42610	chr3:014699145	0.0	W/14699145-14699844	AT3G42610.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28484.1)  
At3g42620	chr3:014700363	0.0	C/14700363-14700970	AT3G42620.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G06690.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At3g42621	chr3:014701782	0.0	W/14701782-14703452	AT3G42621.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 7.2e-90 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g42622	chr3:014704742	0.0	C/14704742-14709298	AT3G42622.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At3g42624	chr3:014712749	0.0	W/14712749-14714635	AT3G42624.1  mRNA_TE_gene  pseudo  note Transposable element gene, transposon protein -related, temporary automated functional assignment  
At3g42626	chr3:014717888	0.0	C/14717888-14720449	AT3G42626.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 6.8e-78 P-value blast match to Q9SL18 /349-510 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g42628	chr3:014720735	0.0	C/14720735-14720872	AT3G42628.1  CDS  go_process tricarboxylic acid cycle|GO:0006099||IEA  go_function phosphoenolpyruvate carboxylase activity|GO:0008964||IEA  go_component cytosol|GO:0005829|18433157|IDA  product phosphoenolpyruvate carboxylase-related / PEP carboxylase-related  note phosphoenolpyruvate carboxylase-related / PEP carboxylase-related; FUNCTIONS IN: phosphoenolpyruvate carboxylase activity; INVOLVED IN: tricarboxylic acid cycle; LOCATED IN: cytosol; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Phosphoenolpyruvate carboxylase (InterPro:IPR001449); BEST Arabidopsis thaliana protein match is: ATPPC2 (PHOSPHOENOLPYRUVATE CARBOXYLASE 2); catalytic/ phosphoenolpyruvate carboxylase (TAIR:AT2G42600.2); Has 206 Blast hits to 206 proteins in 63 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 205; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G42628.1p  transcript_id AT3G42628.1  protein_id AT3G42628.1p  transcript_id AT3G42628.1  
At3g42630	chr3:014722314	0.0	W/14722314-14722403,14722478-14723635	AT3G42630.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14190.1); Has 2597 Blast hits to 1529 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2553; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT3G42630.1p  transcript_id AT3G42630.1  protein_id AT3G42630.1p  transcript_id AT3G42630.1  
At3g42640	chr3:014724309	0.0	W/14724309-14724359,14724445-14724801,14724881-14725195,14725276-14725722,14725804-14725926,14726003-14726107,14726195-14726504,14726601-14727115,14727184-14727357,14727444-14727626,14727705-14727874,14727966-14728062	AT3G42640.1  CDS  gene_syn AHA8, Arabidopsis H(+)-ATPase 8  gene AHA8  go_component plasma membrane|GO:0005886|14506206|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process ATP biosynthetic process|GO:0006754||IEA  go_process cation transport|GO:0006812||IEA  go_process metabolic process|GO:0008152||IEA  go_function ATPase activity|GO:0016887||ISS  product AHA8 (Arabidopsis H(+)-ATPase 8); ATPase  note Arabidopsis H(+)-ATPase 8 (AHA8); FUNCTIONS IN: ATPase activity; INVOLVED IN: cation transport, metabolic process, ATP biosynthetic process; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type, plasma-membrane proton-efflux (InterPro:IPR006534), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: AHA6 (Arabidopsis H(+)-ATPase 6); ATPase (TAIR:AT2G07560.1); Has 20898 Blast hits to 18521 proteins in 1835 species: Archae - 419; Bacteria - 11597; Metazoa - 3330; Fungi - 1528; Plants - 1082; Viruses - 3; Other Eukaryotes - 2939 (source: NCBI BLink).  protein_id AT3G42640.1p  transcript_id AT3G42640.1  protein_id AT3G42640.1p  transcript_id AT3G42640.1  
At3g42645	chr3:014729821	0.0	C/14729821-14734029	AT3G42645.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 3.4e-127 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At3g42646	chr3:014734668	0.0	C/14734668-14735311	AT3G42646.1  pseudogenic_transcript  pseudo  function pseudogene of lactoylglutathione lyase family protein  
At3g42650	chr3:014739356	0.0	C/14739356-14741466	AT3G42650.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 7.9e-100 P-value blast match to At1g36190.1/92-340 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At3g42653	chr3:014743147	0.0	C/14743147-14745900	AT3G42653.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 1.1e-117 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays)  
At3g42656	chr3:014746448	0.0	W/14746448-14747209	AT3G42656.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to OJ1029_F04.11, similar to Ac-like transposase; blastp match of 46% identity and 2.1e-11 P-value to GP|20146365|dbj|BAB89146.1||AP003445 OJ1029_F04.11 {Oryza sativa (japonica cultivar-group)}  
At3g42658	chr3:014749400	0.0	C/14749400-14750294	AT3G42658.1  mRNA_TE_gene  pseudo  gene_syn SADHU NON-CODING RETROTRANSPOSON, SADHU3-2  gene SADHU3-2  function Member of Sadhu non-coding retrotransposon family.In some natural accessions the allele is methylated and silenced.  note Transposable element gene  
At3g42660	chr3:014751280	0.0	W/14751280-14751556,14751640-14752766,14752901-14753077,14753172-14753285,14753597-14753701,14753912-14754046,14754139-14754194,14754289-14754391,14754473-14754589,14754858-14754984,14755082-14755212,14755309-14755701	AT3G42660.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product nucleotide binding  note nucleotide binding; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08390.1); Has 30747 Blast hits to 15361 proteins in 528 species: Archae - 50; Bacteria - 5853; Metazoa - 12286; Fungi - 6007; Plants - 2368; Viruses - 3; Other Eukaryotes - 4180 (source: NCBI BLink).  protein_id AT3G42660.1p  transcript_id AT3G42660.1  protein_id AT3G42660.1p  transcript_id AT3G42660.1  
At3g42670	chr3:014760037	0.0	C/14760037-14760085,14759690-14759922,14758178-14759593,14757930-14758067,14755906-14757840	AT3G42670.1  CDS  gene_syn CHR38, CHROMATIN REMODELING 38, CLASSY1, CLSY  gene CHR38  function Encodes a nuclear localized SNF domain containing protein involved in RNA silencing. Mutants were identified in a screen for defects in the spread of RNA silencing. CLSY1 may affect production of dsRNA from the locus to be silenced.  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_component nucleolus|GO:0005730|17526749|IDA  go_process gene silencing by RNA|GO:0031047|17526749|IMP  go_function DNA binding|GO:0003677||ISS  go_function helicase activity|GO:0004386||ISS  go_function ATP binding|GO:0005524||ISS  product CHR38 (CHROMATIN REMODELING 38); ATP binding / DNA binding / helicase/ nucleic acid binding  note CHROMATIN REMODELING 38 (CHR38); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: gene silencing by RNA; LOCATED IN: nucleolus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: CHR42 (chromatin remodeling 42); ATP binding / DNA binding / helicase/ nucleic acid binding (TAIR:AT5G20420.1); Has 9134 Blast hits to 8199 proteins in 887 species: Archae - 56; Bacteria - 2075; Metazoa - 2703; Fungi - 2049; Plants - 645; Viruses - 55; Other Eukaryotes - 1551 (source: NCBI BLink).  protein_id AT3G42670.1p  transcript_id AT3G42670.1  protein_id AT3G42670.1p  transcript_id AT3G42670.1  
At3g42680	chr3:014762871	0.0	C/14762871-14763400	AT3G42680.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05647.1)  
At3g42690	chr3:014766989	0.0	W/14766989-14770763	AT3G42690.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G04130.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G20750.1); similar to hypothetical protein 23.t00036 [Brassica oleracea] (GB:ABD65624.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At3g42700	chr3:014772634	0.0	W/14772634-14773296	AT3G42700.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G04130.1)  
At3g42710	chr3:014774425	0.0	C/14774425-14775123	AT3G42710.1  mRNA_TE_gene  pseudo  gene_syn F7P3.3  note Transposable element gene, pseudogene, hypothetical protein  
At3g42711	chr3:014776071	0.0	C/14776071-14777102	AT3G42711.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 4.7e-08 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At3g42712	chr3:014780327	0.0	C/14780327-14782489	AT3G42712.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 1.6e-81 P-value blast match to Q9ZQM3 /24-192 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g42713	chr3:014785863	0.0	C/14785863-14787110	AT3G42713.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to putative AP endonuclease/reverse transcriptase, similar to putative non-LTR retroelement reverse transcriptase; blastp match of 33% identity and 1.4e-28 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}  
At3g42728	chr3:014787740	0.0	W/14787740-14787859	AT3G42728.1  CDS  product unknown protein  note unknown protein; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G42728.1p  transcript_id AT3G42728.1  protein_id AT3G42728.1p  transcript_id AT3G42728.1  
At3g42714	chr3:014792552	0.0	W/14792552-14792851	AT3G42714.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to unnamed protein product, similar to putative helicase; blastp match of 60% identity and 4.3e-10 P-value to GP|6815072|dbj|BAA90359.1||AP001080 unnamed protein product {Oryza sativa (japonica cultivar-group)}  
At3g42715	chr3:014795811	0.0	W/14795811-14798513	AT3G42715.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.4e-209 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g42716	chr3:014799890	0.0	W/14799890-14801814	AT3G42716.1  mRNA_TE_gene  pseudo  note Transposable element gene, Athila retroelement ORF2 -related, temporary automated functional assignment  
At3g42719	chr3:014803536	0.0	W/14803536-14804201	AT3G42719.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At3g42726	chr3:014805356	0.0	W/14805356-14805643	AT3G42726.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.3e-12 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At3g42727	chr3:014806176	0.0	C/14806176-14808341	AT3G42727.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At3g42717	chr3:014815118	0.0	W/14815118-14820859	AT3G42717.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.8e-229 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g42718	chr3:014821960	0.0	W/14821960-14823996	AT3G42718.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to putative Athila retroelement ORF1 protein  
At3g42720	chr3:014828338	0.0	C/14828338-14830962	AT3G42720.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 7.7e-41 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At3g42721	chr3:014831701	0.0	C/14831701-14835583	AT3G42721.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 2.2e-145 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At3g42722	chr3:014837718	0.0	W/14837718-14837960	AT3G42722.1  pseudogenic_transcript  pseudo  function pseudogene of the F-box protein family  
At3g42723	chr3:014841022	0.0	C/14841022-14841189,14840744-14840868,14839475-14840654,14838392-14839375	AT3G42723.1  CDS  go_component cytoplasm|GO:0005737||IEA  go_process translation|GO:0006412||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function ATP binding|GO:0005524||IEA  product ATP binding / aminoacyl-tRNA ligase/ nucleotide binding  note ATP binding / aminoacyl-tRNA ligase/ nucleotide binding; FUNCTIONS IN: nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (D, K and N)-like (InterPro:IPR018150), Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: ATP binding / aminoacyl-tRNA ligase/ aspartic-type endopeptidase/ nucleotide binding (TAIR:AT3G29750.1); Has 27 Blast hits to 25 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G42723.1p  transcript_id AT3G42723.1  protein_id AT3G42723.1p  transcript_id AT3G42723.1  
At3g42724	chr3:014841392	0.0	W/14841392-14842638	AT3G42724.1  pseudogenic_transcript  pseudo  note pseudogene, F-box protein, similar to F-box protein  
At3g42725	chr3:014843082	0.0	C/14843082-14843690	AT3G42725.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 6 Blast hits to 6 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G42725.1p  transcript_id AT3G42725.1  protein_id AT3G42725.1p  transcript_id AT3G42725.1  
At3g42730	chr3:014845236	0.0	W/14845236-14851103	AT3G42730.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G27780.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G36860.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G34740.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At3g42740	chr3:014851876	0.0	W/14851876-14852568	AT3G42740.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14774.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05564.1); similar to hypothetical protein 40.t00047 [Brassica oleracea] (GB:ABD65162.1)  
At3g42750	chr3:014853372	0.0	W/14853372-14854029	AT3G42750.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G32394.1)  
At3g42760	chr3:014854614	0.0	C/14854614-14855560	AT3G42760.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05303.1); similar to hypothetical protein 31.t00082 [Brassica oleracea] (GB:ABD65101.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At3g42763	chr3:014856137	0.0	C/14856137-14858983	AT3G42763.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 2.5e-80 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g42766	chr3:014861485	0.0	W/14861485-14865389	AT3G42766.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 4.1e-274 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)  
At3g42770	chr3:014867122	0.0	W/14867122-14868000,14868082-14868225,14868304-14868554,14869526-14869677,14869911-14870083	AT3G42770.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G44060.1); Has 1279 Blast hits to 1226 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1277; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G42770.1p  transcript_id AT3G42770.1  protein_id AT3G42770.1p  transcript_id AT3G42770.1  
At3g42780	chr3:014871213	0.0	W/14871213-14871743	AT3G42780.1  CDS  gene_syn T21C14.1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09130.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G42780.1p  transcript_id AT3G42780.1  protein_id AT3G42780.1p  transcript_id AT3G42780.1  
At3g42783	chr3:014871922	0.0	C/14871922-14875383	AT3G42783.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 7.1e-172 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At3g42786	chr3:014876476	0.0	W/14876476-14877255	AT3G42786.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09130.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G42786.1p  transcript_id AT3G42786.1  protein_id AT3G42786.1p  transcript_id AT3G42786.1  
At3g42790	chr3:014879519	0.0	C/14879519-14879618,14879380-14879412,14878890-14879118,14878683-14878812,14878128-14878388	AT3G42790.1  CDS  gene_syn AL3, ALFIN-LIKE 3  gene AL3  function AL3 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.  go_component nucleus|GO:0005634|19154204|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function methylated histone residue binding|GO:0035064|19154204|ISS  product AL3 (ALFIN-LIKE 3); DNA binding / methylated histone residue binding  note ALFIN-LIKE 3 (AL3); FUNCTIONS IN: methylated histone residue binding, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: AL5 (ALFIN-LIKE 5); DNA binding / methylated histone residue binding (TAIR:AT5G20510.1); Has 1236 Blast hits to 1209 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 669; Fungi - 222; Plants - 284; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT3G42790.1p  transcript_id AT3G42790.1  protein_id AT3G42790.1p  transcript_id AT3G42790.1  
At3g42791	chr3:014888342	0.0	W/14888342-14891215	AT3G42791.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.7e-56 P-value blast match to GB:BAA11674 ORF(AA 1-1338) (Ty1_Copia-element) (Nicotiana tabacum)  
At3g42792	chr3:014892081	0.0	W/14892081-14892895	AT3G42792.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-related transposase, temporary automated functional assignment  
At3g42794	chr3:014895823	0.0	W/14895823-14899217	AT3G42794.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 3.2e-05 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At3g42796	chr3:014899844	0.0	W/14899844-14900608	AT3G42796.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.5e-31 P-value blast match to reverse transcriptase (Ty1_Copia-element) (Arabidopsis thaliana)  
At3g42798	chr3:014901653	0.0	W/14901653-14902694	AT3G42798.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to OSJNBb0043H09.1, similar to En/Spm-like transposon protein; blastp match of 52% identity and 1.8e-07 P-value to GP|21740634|emb|CAD40195.1||AL606611 OSJNBb0043H09.1 {Oryza sativa (japonica cultivar-group)}  
At3g42800	chr3:014905837	0.0	W/14905837-14906862	AT3G42800.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: petal, leaf apex, root, carpel; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54200.1); Has 1013 Blast hits to 290 proteins in 80 species: Archae - 0; Bacteria - 68; Metazoa - 274; Fungi - 62; Plants - 48; Viruses - 0; Other Eukaryotes - 561 (source: NCBI BLink).  protein_id AT3G42800.1p  transcript_id AT3G42800.1  protein_id AT3G42800.1p  transcript_id AT3G42800.1  
At3g42803	chr3:014908575	0.0	W/14908575-14910194	AT3G42803.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to P0707D10.17, similar to putative non-LTR retroelement reverse transcriptase; blastp match of 25% identity and 1.1e-14 P-value to GP|13603432|dbj|BAB40159.1||AP002910 P0707D10.17 {Oryza sativa (japonica cultivar-group)}  
At3g42806	chr3:014914008	0.0	W/14914008-14918667	AT3G42806.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 2.2e-53 P-value blast match to Q9SHN7 /450-633 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g42810	chr3:014919657	0.0	W/14919657-14920215	AT3G42810.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G18420.1); similar to hypothetical protein 26.t00076 [Brassica oleracea] (GB:ABD65021.1)  
At3g42820	chr3:014921037	0.0	C/14921037-14927032	AT3G42820.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G35770.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G08340.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At3g42830	chr3:014930552	0.0	C/14930552-14930678,14930408-14930458,14930262-14930321,14929842-14929913,14929714-14929751	AT3G42830.1  CDS  go_component ubiquitin ligase complex|GO:0000151|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_function ubiquitin-protein ligase activity|GO:0004842|11019805|TAS  product ring-box protein Roc1/Rbx1/Hrt1, putative  note ring-box protein Roc1/Rbx1/Hrt1, putative; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: RBX1 (RING-BOX 1); protein binding (TAIR:AT5G20570.1); Has 826 Blast hits to 824 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 429; Fungi - 141; Plants - 81; Viruses - 3; Other Eukaryotes - 172 (source: NCBI BLink).  protein_id AT3G42830.1p  transcript_id AT3G42830.1  protein_id AT3G42830.1p  transcript_id AT3G42830.1  
At3g42835	chr3:014931950	0.0	W/14931950-14932252	AT3G42835.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retroelement reverse transcriptase -related, temporary automated functional assignment  
At3g42836	chr3:014932439	0.0	C/14932439-14935117	AT3G42836.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 3.5e-21 P-value blast match to MVA11 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)  
At3g42837	chr3:014936240	0.0	W/14936240-14938777	AT3G42837.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 4.7e-110 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element)  
At3g42850	chr3:014945193	0.0	C/14945193-14945291,14945018-14945125,14944857-14944925,14944680-14944763,14944517-14944593,14944366-14944432,14944239-14944296,14944094-14944161,14943927-14943989,14943790-14943843,14943600-14943702,14943415-14943524,14943214-14943333,14943043-14943099,14942746-14942897,14942514-14942664,14942354-14942437,14942151-14942267,14941952-14942085,14941791-14941872,14941634-14941721,14941428-14941567,14941277-14941353,14941033-14941209,14940781-14940946,14940617-14940688,14940321-14940524,14940114-14940227	AT3G42850.1  CDS  go_component cytoplasm|GO:0005737||IEA  go_process metabolic process|GO:0008152||IEA  go_process phosphorylation|GO:0016310||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||IEA  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_function galactokinase activity|GO:0004335||ISS  go_function ATP binding|GO:0005524||ISS  product galactokinase, putative  note galactokinase, putative; FUNCTIONS IN: kinase activity, phosphotransferase activity, alcohol group as acceptor, galactokinase activity, ATP binding; INVOLVED IN: metabolic process, phosphorylation; LOCATED IN: cytoplasm; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Mevalonate and galactokinase (InterPro:IPR006206), GHMP kinase (InterPro:IPR006204), Galactokinase, glycosyltransferase (InterPro:IPR012369), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721), GHMP kinase, C-terminal (InterPro:IPR013750); BEST Arabidopsis thaliana protein match is: ARA1 (ARABINOSE KINASE); ATP binding / L-arabinokinase/ galactokinase (TAIR:AT4G16130.1); Has 2076 Blast hits to 2073 proteins in 724 species: Archae - 61; Bacteria - 1278; Metazoa - 155; Fungi - 85; Plants - 70; Viruses - 0; Other Eukaryotes - 427 (source: NCBI BLink).  protein_id AT3G42850.1p  transcript_id AT3G42850.1  protein_id AT3G42850.1p  transcript_id AT3G42850.1  
At3g42860	chr3:014947723	0.0	C/14947723-14948097,14947430-14947636,14946458-14946994	AT3G42860.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc knuckle (CCHC-type) family protein  note zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, CCHC retroviral-type (InterPro:IPR013084), Zinc finger, GRF-type (InterPro:IPR010666); BEST Arabidopsis thaliana protein match is: CSDP1 (cold shock domain protein 1); RNA binding / double-stranded DNA binding / nucleic acid binding / single-stranded DNA binding (TAIR:AT4G36020.1); Has 24952 Blast hits to 9613 proteins in 338 species: Archae - 0; Bacteria - 0; Metazoa - 1228; Fungi - 645; Plants - 731; Viruses - 21786; Other Eukaryotes - 562 (source: NCBI BLink).  protein_id AT3G42860.1p  transcript_id AT3G42860.1  protein_id AT3G42860.1p  transcript_id AT3G42860.1  
At3g42870	chr3:014949456	0.0	W/14949456-14949520,14950272-14950860,14950947-14951031,14951080-14951279	AT3G42870.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G30520.1); Has 9 Blast hits to 9 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G42870.1p  transcript_id AT3G42870.1  protein_id AT3G42870.1p  transcript_id AT3G42870.1  
At3g42875	chr3:014951431	0.0	W/14951431-14952669	AT3G42875.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to putative transposase, similar to En/Spm-like transposon protein, putative; blastp match of 37% identity and 2.1e-18 P-value to GP|15987055|gb|AAL11884.1|AF412282_1|AF412282 putative transposase {Zea mays}  
At3g42880	chr3:014954587	0.0	W/14954587-14955919,14956009-14956577	AT3G42880.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATP binding / kinase/ protein serine/threonine kinase (TAIR:AT5G20690.1); Has 63810 Blast hits to 43211 proteins in 2219 species: Archae - 36; Bacteria - 3954; Metazoa - 16112; Fungi - 1804; Plants - 35355; Viruses - 154; Other Eukaryotes - 6395 (source: NCBI BLink).  protein_id AT3G42880.1p  transcript_id AT3G42880.1  protein_id AT3G42880.1p  transcript_id AT3G42880.1  
At3g42883	chr3:014957142	0.0	C/14957142-14959892	AT3G42883.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.5e-10 P-value blast match to GB:CAA26446 ORF2 (Ty1_Copia-element) (Drosophila melanogaster)  
At3g42886	chr3:014963295	0.0	W/14963295-14966755	AT3G42886.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.0e-89 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At3g42890	chr3:014966924	0.0	W/14966924-14969056	AT3G42890.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.4e-10 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At3g42900	chr3:014970609	0.0	W/14970609-14972658	AT3G42900.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 3.7e-44 P-value blast match to Q9SHN7 /450-633 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g42910	chr3:014974103	0.0	C/14974103-14977761	AT3G42910.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G28250.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At3g42913	chr3:014979792	0.0	W/14979792-14982680	AT3G42913.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.8e-227 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g42916	chr3:014983525	0.0	W/14983525-14985656	AT3G42916.1  mRNA_TE_gene  pseudo  note Transposable element gene, transposon protein -related, temporary automated functional assignment  
At3g42920	chr3:014986919	0.0	C/14986919-14987428	AT3G42920.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G04390.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1)  
At3g42922	chr3:014989934	0.0	W/14989934-14990452	AT3G42922.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to Mutator-like transposase  
At3g42924	chr3:014993668	0.0	C/14993668-14994581	AT3G42924.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.2e-102 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element)  
At3g42927	chr3:014994906	0.0	W/14994906-14997452	AT3G42927.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 3.2e-94 P-value blast match to F18P9 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)  
At3g42930	chr3:014998007	0.0	C/14998007-14999235	AT3G42930.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 1.0e-43 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At3g42935	chr3:015001676	0.0	W/15001676-15003980	AT3G42935.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 9.9e-27 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At3g42940	chr3:015006613	0.0	W/15006613-15007194	AT3G42940.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G24480.1); Has 38 Blast hits to 38 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G42940.1p  transcript_id AT3G42940.1  protein_id AT3G42940.1p  transcript_id AT3G42940.1  
At3g42945	chr3:015010801	0.0	W/15010801-15013507	AT3G42945.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 2.1e-74 P-value blast match to Q9SJR8 /172-333 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g42950	chr3:015015383	0.0	W/15015383-15015787,15015914-15016034,15016366-15016614,15017045-15017198,15017275-15017800	AT3G42950.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT1G19170.1); Has 2496 Blast hits to 2489 proteins in 316 species: Archae - 2; Bacteria - 615; Metazoa - 8; Fungi - 925; Plants - 839; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT3G42950.1p  transcript_id AT3G42950.1  protein_id AT3G42950.1p  transcript_id AT3G42950.1  
At3g42960	chr3:015019263	0.0	C/15019263-15019656,15018735-15019159	AT3G42960.1  CDS  gene_syn ALCOHOL DEHYDROGENASE, ARABIDOPSIS TAPETUM 1, ASD, ATA1  gene ATA1  function Arabidopsis homolog of TASSELSEED2. Expressed specifically in tapetal cells.  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process flower development|GO:0009908|9351239|ISS  go_function oxidoreductase activity|GO:0016491||ISS  product ATA1 (ARABIDOPSIS TAPETUM 1); binding / catalytic/ oxidoreductase  note ARABIDOPSIS TAPETUM 1 (ATA1); FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: flower development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT3G51680.1); Has 78027 Blast hits to 77885 proteins in 2184 species: Archae - 439; Bacteria - 44288; Metazoa - 4048; Fungi - 3805; Plants - 1473; Viruses - 7; Other Eukaryotes - 23967 (source: NCBI BLink).  protein_id AT3G42960.1p  transcript_id AT3G42960.1  protein_id AT3G42960.1p  transcript_id AT3G42960.1  
At3g42970	chr3:015024807	0.0	W/15024807-15024967,15025045-15025144	AT3G42970.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G42970.1p  transcript_id AT3G42970.1  protein_id AT3G42970.1p  transcript_id AT3G42970.1  
At3g42980	chr3:015027589	0.0	W/15027589-15029109	AT3G42980.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14450.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42400.1); similar to hypothetical protein 31.t00031 [Brassica oleracea] (GB:ABD65118.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At3g42990	chr3:015030354	0.0	W/15030354-15030378,15030788-15031152	AT3G42990.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G42990.1p  transcript_id AT3G42990.1  protein_id AT3G42990.1p  transcript_id AT3G42990.1  
At3g42993	chr3:015031624	0.0	W/15031624-15037037	AT3G42993.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 4.2e-156 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At3g42996	chr3:015038985	0.0	W/15038985-15043310	AT3G42996.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.4e-235 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At3g43000	chr3:015044566	0.0	C/15044566-15046814	AT3G43000.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At3g43005	chr3:015048332	0.0	W/15048332-15048949	AT3G43005.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 1.3e-32 P-value blast match to O22273 /233-373 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g43020	chr3:015052579	0.0	W/15052579-15057585	AT3G43020.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, predicted proteins, Arabidopsis thaliana  
At3g43025	chr3:015058239	0.0	C/15058239-15058928	AT3G43025.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At3g43040	chr3:015060571	0.0	W/15060571-15061578	AT3G43040.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, includes At2g10370, At5g36050, At1g35090, At1g44860, At4g19300, At1g42400, At3g43040, At3g42500  
At3g43050	chr3:015062529	0.0	W/15062529-15064576	AT3G43050.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 5.0e-39 P-value blast match to Q9SUF8 /145-308 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g43060	chr3:015065459	0.0	C/15065459-15067927	AT3G43060.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At3g43070	chr3:015068972	0.0	W/15068972-15071172	AT3G43070.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At3g43080	chr3:015072355	0.0	C/15072355-15075080	AT3G43080.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 2.8e-60 P-value blast match to Q9S9L6 /322-461 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g43083	chr3:015077161	0.0	C/15077161-15077221,15075840-15076015	AT3G43083.1  CDS  gene_syn LCR33, Low-molecular-weight cysteine-rich 33  gene LCR33  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR33 (Low-molecular-weight cysteine-rich 33)  note Low-molecular-weight cysteine-rich 33 (LCR33); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); Has 10 Blast hits to 10 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G43083.1p  transcript_id AT3G43083.1  protein_id AT3G43083.1p  transcript_id AT3G43083.1  
At3g43090	chr3:015083044	0.0	C/15083044-15084520	AT3G43090.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 8.4e-12 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At3g43095	chr3:015087294	0.0	C/15087294-15088694	AT3G43095.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to putative non-LTR retroelement reverse transcriptase  
At3g43100	chr3:015089891	0.0	W/15089891-15091170	AT3G43100.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30550.1); similar to Nucleic acid-binding, OB-fold [Medicago truncatula] (GB:ABD32456.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At3g43110	chr3:015091710	0.0	C/15091710-15092285	AT3G43110.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G20790.1); Has 16 Blast hits to 16 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G43110.1p  transcript_id AT3G43110.1  protein_id AT3G43110.1p  transcript_id AT3G43110.1  
At3g43120	chr3:015094644	0.0	W/15094644-15095097,15095284-15095312	AT3G43120.1  CDS  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  go_function calmodulin binding|GO:0005516|11782485|IEP  go_function calmodulin binding|GO:0005516|11782485|TAS  product auxin-responsive protein-related  note auxin-responsive protein-related; FUNCTIONS IN: calmodulin binding; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative / small auxin up RNA (SAUR_B) (TAIR:AT5G20810.1); Has 734 Blast hits to 723 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 733; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G43120.1p  transcript_id AT3G43120.1  protein_id AT3G43120.1p  transcript_id AT3G43120.1  
At3g43123	chr3:015098333	0.0	C/15098333-15098851	AT3G43123.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to putative non-LTR retroelement reverse transcriptase  
At3g43126	chr3:015100476	0.0	W/15100476-15104216	AT3G43126.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 6.3e-145 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays)  
At3g43128	chr3:015105385	0.0	W/15105385-15107529	AT3G43128.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 5.1e-95 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At3g43130	chr3:015110606	0.0	C/15110606-15112253	AT3G43130.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, predicted proteins, Arabidopsis thaliana  
At3g43140	chr3:015112431	0.0	W/15112431-15112845	AT3G43140.1  mRNA_TE_gene  pseudo  note Transposable element gene  
At3g43141	chr3:015113157	0.0	C/15113157-15115856	AT3G43141.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.1e-194 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g43142	chr3:015118447	0.0	C/15118447-15121602	AT3G43142.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 5.0e-273 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g43144	chr3:015124181	0.0	C/15124181-15129553	AT3G43144.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 5.9e-97 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At3g43146	chr3:015134145	0.0	W/15134145-15136307	AT3G43146.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 3.9e-55 P-value blast match to Q9ZQM3 /24-192 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g43147	chr3:015137565	0.0	W/15137565-15138176	AT3G43147.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At3g43148	chr3:015139995	0.0	W/15139995-15140019,15140235-15140303,15140551-15140943,15141161-15141808,15141902-15142029,15142115-15142143,15142245-15142325,15142389-15142792,15142879-15143123	AT3G43148.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT5G32590.1).  protein_id AT3G43148.1p  transcript_id AT3G43148.1  protein_id AT3G43148.1p  transcript_id AT3G43148.1  
At3g43150	chr3:015143695	0.0	W/15143695-15143889,15143956-15144345	AT3G43150.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G32160.1); Has 30 Blast hits to 28 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G43150.1p  transcript_id AT3G43150.1  protein_id AT3G43150.1p  transcript_id AT3G43150.1  
At3g43151	chr3:015145329	0.0	C/15145329-15146641	AT3G43151.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 7.6e-74 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At3g43152	chr3:015147242	0.0	W/15147242-15149791	AT3G43152.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.3e-274 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g43153	chr3:015150853	0.0	C/15150853-15150916,15150673-15150766,15150516-15150586,15150427-15150467,15150104-15150343	AT3G43153.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product cAMP-dependent protein kinase inhibitor-related  note cAMP-dependent protein kinase inhibitor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G43153.1p  transcript_id AT3G43153.1  protein_id AT3G43153.1p  transcript_id AT3G43153.1  
At3g43154	chr3:015151222	0.0	W/15151222-15152538	AT3G43154.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At3g43156	chr3:015154032	0.0	W/15154032-15155912	AT3G43156.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.1e-260 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g43157	chr3:015156980	0.0	W/15156980-15158401	AT3G43157.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to putative Athila retroelement ORF1 protein  
At3g43158	chr3:015161434	0.0	W/15161434-15162615	AT3G43158.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to putative transposon protein  
At3g43160	chr3:015166561	0.0	W/15166561-15166633,15166704-15166796,15166889-15167165,15167636-15167875,15167953-15168032,15168101-15168225	AT3G43160.1  CDS  gene_syn MEE38, maternal effect embryo arrest 38  gene MEE38  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function molecular_function|GO:0003674||ND  product MEE38 (maternal effect embryo arrest 38)  note maternal effect embryo arrest 38 (MEE38); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage, E expanded cotyledon stage; Has 18 Blast hits to 17 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 1; Plants - 2; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT3G43160.1p  transcript_id AT3G43160.1  protein_id AT3G43160.1p  transcript_id AT3G43160.1  
At3g43170	chr3:015172658	0.0	C/15172658-15172754,15172502-15172565,15172148-15172388	AT3G43170.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54330.1); Has 63 Blast hits to 63 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G43170.1p  transcript_id AT3G43170.1  protein_id AT3G43170.1p  transcript_id AT3G43170.1  
At3g43175	chr3:015173888	0.0	C/15173888-15177508	AT3G43175.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 5.4e-49 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At3g43180	chr3:015178043	0.0	W/15178043-15178426,15178519-15178642,15178870-15178937	AT3G43180.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G45560.1); Has 150 Blast hits to 149 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 35; Plants - 77; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT3G43180.1p  transcript_id AT3G43180.1  protein_id AT3G43180.1p  transcript_id AT3G43180.1  
At3g43190	chr3:015182474	0.0	C/15182474-15182577,15182099-15182377,15181825-15182017,15181407-15181742,15181228-15181323,15180983-15181156,15180775-15180891,15180522-15180688,15180200-15180424,15179551-15180114,15179334-15179472,15179204-15179236	AT3G43190.1  CDS  gene_syn ATSUS4, SUS4  gene SUS4  function Encodes a protein with sucrose synthase activity (SUS4).  go_component vacuole|GO:0005773|14760709|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to hypoxia|GO:0001666|17257168|TAS  go_process sucrose biosynthetic process|GO:0005986||ISS  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function sucrose synthase activity|GO:0016157|17257168|IDA  go_function sucrose synthase activity|GO:0016157|17257168|IGI  go_function sucrose synthase activity|GO:0016157||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product SUS4; UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups  note SUS4; FUNCTIONS IN: UDP-glycosyltransferase activity, sucrose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: sucrose biosynthetic process, response to hypoxia; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Sucrose synthase, plants and cyanobacteria (InterPro:IPR012820), Sucrose synthase (InterPro:IPR000368), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: SUS1 (SUCROSE SYNTHASE 1); UDP-glycosyltransferase/ sucrose synthase (TAIR:AT5G20830.2); Has 5004 Blast hits to 4999 proteins in 882 species: Archae - 180; Bacteria - 2552; Metazoa - 92; Fungi - 52; Plants - 473; Viruses - 0; Other Eukaryotes - 1655 (source: NCBI BLink).  protein_id AT3G43190.1p  transcript_id AT3G43190.1  protein_id AT3G43190.1p  transcript_id AT3G43190.1  
At3g43200	chr3:015185766	0.0	C/15185766-15186590	AT3G43200.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein, predicted proteins, Arabidopsis thaliana  
At3g43205	chr3:015187016	0.0	C/15187016-15187420	AT3G43205.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 9.5e-21 P-value blast match to GB:AAD12998 pol polyprotein (Ty1_Copia-element) (Zea mays)  
At3g43210	chr3:015191429	0.0	W/15191429-15191657,15191758-15191847,15191933-15192033,15192127-15192240,15192319-15192400,15192604-15192671,15192823-15192882,15192948-15193072,15193221-15193419,15193843-15193980,15194158-15194244,15194329-15195213,15195299-15195606,15195691-15196021	AT3G43210.1  CDS  gene_syn TES, TETRASPORE  gene TES  function Required for cytokinesis in pollen. In mutants, all four microspore nuclei remain within the same cytoplasm after meiosis.  go_component microtubule associated complex|GO:0005875||IEA  go_process male meiosis cytokinesis|GO:0007112|9217006|IMP  go_process radial microtubular system formation|GO:0010245|12694597|IMP  go_function microtubule motor activity|GO:0003777|12694597|ISS  go_function microtubule motor activity|GO:0003777||ISS  product TES (TETRASPORE); microtubule motor  note TETRASPORE (TES); FUNCTIONS IN: microtubule motor activity; INVOLVED IN: male meiosis cytokinesis, radial microtubular system formation; LOCATED IN: microtubule associated complex; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: HIK (HINKEL); ATP binding / microtubule motor (TAIR:AT1G18370.1); Has 11001 Blast hits to 10043 proteins in 382 species: Archae - 29; Bacteria - 228; Metazoa - 5536; Fungi - 1130; Plants - 1001; Viruses - 3; Other Eukaryotes - 3074 (source: NCBI BLink).  protein_id AT3G43210.1p  transcript_id AT3G43210.1  protein_id AT3G43210.1p  transcript_id AT3G43210.1  
At3g43220	chr3:015202579	0.0	C/15202579-15202653,15202272-15202473,15202014-15202179,15201607-15201829,15201185-15201261,15200737-15200924,15200546-15200643,15200339-15200472,15200101-15200232,15199478-15199838,15199096-15199217,15198909-15199019,15198270-15198458,15197792-15197965,15197364-15197478,15197123-15197212	AT3G43220.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|GO:0004439||ISS  product phosphoinositide phosphatase family protein  note phosphoinositide phosphatase family protein; FUNCTIONS IN: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Synaptojanin, N-terminal (InterPro:IPR002013); BEST Arabidopsis thaliana protein match is: phosphoinositide phosphatase family protein (TAIR:AT5G20840.1); Has 1532 Blast hits to 1173 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 655; Fungi - 428; Plants - 166; Viruses - 0; Other Eukaryotes - 283 (source: NCBI BLink).  protein_id AT3G43220.1p  transcript_id AT3G43220.1  protein_id AT3G43220.1p  transcript_id AT3G43220.1  
At3g43220	chr3:015202579	0.0	C/15202579-15202653,15202272-15202473,15202014-15202179,15201607-15201829,15201185-15201261,15200737-15200924,15200546-15200643,15200339-15200472,15200101-15200232,15199478-15199838,15199096-15199217,15198909-15199019,15198270-15198458,15197904-15197965,15197453-15197478	AT3G43220.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|GO:0004439||ISS  product phosphoinositide phosphatase family protein  note phosphoinositide phosphatase family protein; FUNCTIONS IN: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Synaptojanin, N-terminal (InterPro:IPR002013); BEST Arabidopsis thaliana protein match is: phosphoinositide phosphatase family protein (TAIR:AT5G20840.1).  protein_id AT3G43220.2p  transcript_id AT3G43220.2  protein_id AT3G43220.2p  transcript_id AT3G43220.2  
At3g43230	chr3:015207776	0.0	W/15207776-15208651,15208791-15208991,15209085-15209280,15209415-15209599	AT3G43230.1  CDS  go_component cellular_component|GO:0005575||ND  go_process signal transduction|GO:0007165|15358268|ISS  go_function zinc ion binding|GO:0008270||ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product zinc finger (FYVE type) family protein  note zinc finger (FYVE type) family protein; FUNCTIONS IN: phosphoinositide binding, zinc ion binding; INVOLVED IN: signal transduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, FYVE-type (InterPro:IPR000306), Zinc finger, FYVE-related (InterPro:IPR017455), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Ysc84 actin-binding domain (InterPro:IPR007461); BEST Arabidopsis thaliana protein match is: phosphoinositide binding / zinc ion binding (TAIR:AT1G29800.2); Has 3031 Blast hits to 2947 proteins in 232 species: Archae - 0; Bacteria - 157; Metazoa - 1828; Fungi - 464; Plants - 196; Viruses - 3; Other Eukaryotes - 383 (source: NCBI BLink).  protein_id AT3G43230.1p  transcript_id AT3G43230.1  protein_id AT3G43230.1p  transcript_id AT3G43230.1  
At3g43240	chr3:015214288	0.0	C/15214288-15214440,15213852-15214043,15213581-15213634,15213404-15213492,15212996-15213272,15212832-15212888,15212669-15212700,15212386-15212521,15212126-15212299,15211487-15211726,15210990-15211292,15210776-15210913,15210596-15210694,15210400-15210500,15210221-15210311,15210032-15210139	AT3G43240.1  CDS  go_component intracellular|GO:0005622||IEA  go_function DNA binding|GO:0003677||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component intracellular|GO:0005622||ISS  go_function DNA binding|GO:0003677||ISS  product ARID/BRIGHT DNA-binding domain-containing protein  note ARID/BRIGHT DNA-binding domain-containing protein; FUNCTIONS IN: protein binding, DNA binding, zinc ion binding; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), AT-rich interaction region (InterPro:IPR001606); Has 87 Blast hits to 80 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 21; Fungi - 7; Plants - 56; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G43240.1p  transcript_id AT3G43240.1  protein_id AT3G43240.1p  transcript_id AT3G43240.1  
At3g43250	chr3:015216713	0.0	W/15216713-15217462	AT3G43250.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product cell cycle control protein-related  note cell cycle control protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF572 (InterPro:IPR007590); BEST Arabidopsis thaliana protein match is: cell cycle control protein-related (TAIR:AT2G32050.1); Has 1163 Blast hits to 959 proteins in 163 species: Archae - 0; Bacteria - 13; Metazoa - 433; Fungi - 176; Plants - 62; Viruses - 0; Other Eukaryotes - 479 (source: NCBI BLink).  protein_id AT3G43250.1p  transcript_id AT3G43250.1  protein_id AT3G43250.1p  transcript_id AT3G43250.1  
At3g43251	chr3:015217858	0.0	C/15217858-15218346	AT3G43251.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G26880; tRNA/rRNA methyltransferase (SpoU) family protein  
At3g43260	chr3:015219454	0.0	W/15219454-15219612,15219850-15219918,15220010-15220107,15221074-15221370,15221446-15221584,15221676-15221723	AT3G43260.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: PBS lyase HEAT-like repeat-containing protein (TAIR:AT3G62530.1); Has 43 Blast hits to 39 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G43260.1p  transcript_id AT3G43260.1  protein_id AT3G43260.1p  transcript_id AT3G43260.1  
At3g43270	chr3:015224806	0.0	C/15224806-15225124,15223192-15223758,15222402-15223099	AT3G43270.1  CDS  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase inhibitor (InterPro:IPR006501), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: enzyme inhibitor/ pectinesterase (TAIR:AT4G33220.1); Has 1380 Blast hits to 1337 proteins in 184 species: Archae - 0; Bacteria - 247; Metazoa - 1; Fungi - 134; Plants - 998; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G43270.1p  transcript_id AT3G43270.1  protein_id AT3G43270.1p  transcript_id AT3G43270.1  
At3g43280	chr3:015229778	0.0	C/15229778-15230251	AT3G43280.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: seed; EXPRESSED DURING: E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19240.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G43280.1p  transcript_id AT3G43280.1  protein_id AT3G43280.1p  transcript_id AT3G43280.1  
At3g43290	chr3:015230568	0.0	W/15230568-15230661,15230713-15230927,15231011-15231115	AT3G43290.1  CDS  go_process gluconeogenesis|GO:0006094||IEA  go_process glycolysis|GO:0006096||IEA  go_process aerobic glycerol catabolic process|GO:0019564||IEA  go_process glucose catabolic process to butanediol|GO:0019650||IEA  go_process acetate fermentation|GO:0019654||IEA  go_process glucose catabolic process to D-lactate and ethanol|GO:0019656||IEA  go_process glucose catabolic process to lactate and acetate|GO:0019658||IEA  go_process glyceraldehyde-3-phosphate catabolic process|GO:0019683||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 8 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; EXPRESSED DURING: LP.10 ten leaves visible; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G43290.1p  transcript_id AT3G43290.1  protein_id AT3G43290.1p  transcript_id AT3G43290.1  
At3g43291	chr3:015231277	0.0	C/15231277-15231441	AT3G43291.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G43291.1p  transcript_id AT3G43291.1  protein_id AT3G43291.1p  transcript_id AT3G43291.1  
At3g43300	chr3:015244932	0.0	C/15244932-15245034,15244116-15244164,15243535-15243775,15243247-15243368,15243115-15243173,15242942-15242999,15242783-15242867,15242481-15242675,15241992-15242050,15241658-15241727,15241502-15241570,15240998-15241120,15240860-15240921,15240684-15240821,15240471-15240567,15240277-15240375,15239945-15240139,15239764-15239874,15239509-15239693,15238721-15239344,15238156-15238573,15237539-15237778,15237305-15237428,15237051-15237199,15236513-15236869,15236144-15236310,15235834-15236075,15235491-15235657,15235240-15235353,15234952-15235088,15234622-15234877,15234436-15234531,15234235-15234300	AT3G43300.1  CDS  gene_syn ARABIDOPSIS THALIANA HOPM INTERACTOR 7, ATMIN7  gene ATMIN7  function AtMIN7 is an immunity associated Arabidopsis protein targeted by HopM1, a conserved Pseudomonas syringae virulence protein. AtMIN7 encodes one of the eight members of the Arabidopsis adenosine diphosphate (ADP) ribosylation factor (ARF) guanine nucleotide exchange factor (GEF) protein family. The AFR GEF proteins are key components of the vesicle trafficking system in eukaryotic cells. HopM1 mediates the destruction of AtMIN7 via the host proteasome.  go_component intracellular|GO:0005622||IEA  go_process defense response to bacterium|GO:0042742|16840699|IMP  go_function guanyl-nucleotide exchange factor activity|GO:0005085||ISS  go_function protein binding|GO:0005515|16840699|IPI  product ATMIN7 (ARABIDOPSIS THALIANA HOPM INTERACTOR 7); guanyl-nucleotide exchange factor/ protein binding  note ARABIDOPSIS THALIANA HOPM INTERACTOR 7 (ATMIN7); FUNCTIONS IN: protein binding, guanyl-nucleotide exchange factor activity; INVOLVED IN: defense response to bacterium; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904), Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF1981, SEC7 associated (InterPro:IPR015403); BEST Arabidopsis thaliana protein match is: guanine nucleotide exchange family protein (TAIR:AT3G60860.1); Has 2331 Blast hits to 2001 proteins in 179 species: Archae - 0; Bacteria - 24; Metazoa - 1327; Fungi - 462; Plants - 164; Viruses - 0; Other Eukaryotes - 354 (source: NCBI BLink).  protein_id AT3G43300.1p  transcript_id AT3G43300.1  protein_id AT3G43300.1p  transcript_id AT3G43300.1  
At3g43302	chr3:015246180	0.0	W/15246180-15250302	AT3G43302.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 3.7e-143 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At3g43303	chr3:015250630	0.0	W/15250630-15251025	AT3G43303.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At3g43304	chr3:015251803	0.0	W/15251803-15260553	AT3G43304.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 5.1e-231 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g43307	chr3:015262136	0.0	W/15262136-15265104	AT3G43307.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.6e-72 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At3g43310	chr3:015265923	0.0	C/15265923-15268370	AT3G43310.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein, hypothetical protein At2g15420 - Arabidopsis thaliana, EMBL:AC006920  
At3g43315	chr3:015271837	0.0	C/15271837-15275043	AT3G43315.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 7.0e-37 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At3g43320	chr3:015275461	0.0	C/15275461-15276993	AT3G43320.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G37050.1); similar to putative DNA/RNA binding protein [Brassica napus] (GB:AAM82603.1); contains domain Retrovirus zinc finger-like domains (SSF57756)  
At3g43330	chr3:015279347	0.0	W/15279347-15281908	AT3G43330.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30560.1); similar to hypothetical protein 31.t00030 [Brassica oleracea] (GB:ABD65117.1); contains domain HELICASE-RELATED (PTHR10492)  
At3g43340	chr3:015285744	0.0	C/15285744-15285851,15285241-15285297,15284861-15284920	AT3G43340.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: SVR1 (SUPPRESSOR OF VARIEGATION 1); RNA binding / pseudouridine synthase (TAIR:AT2G39140.1); Has 614 Blast hits to 614 proteins in 211 species: Archae - 0; Bacteria - 450; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink).  protein_id AT3G43340.1p  transcript_id AT3G43340.1  protein_id AT3G43340.1p  transcript_id AT3G43340.1  
At3g43350	chr3:015286073	0.0	W/15286073-15290808	AT3G43350.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52960.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G64410.1); similar to hypothetical protein 27.t00039 [Brassica oleracea] (GB:ABD65060.1); contains InterPro domain Protein of unknown function DUF889, eukaryote; (InterPro:IPR010285)  
At3g43352	chr3:015299365	0.0	C/15299365-15299640	AT3G43352.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.6e-09 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At3g43355	chr3:015302249	0.0	C/15302249-15304269	AT3G43355.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, temporary automated functional assignment  
At3g43356	chr3:015304571	0.0	C/15304571-15306362	AT3G43356.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 6.2e-93 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g43357	chr3:015307272	0.0	W/15307272-15312506	AT3G43357.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 9.3e-50 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)  
At3g43358	chr3:015313040	0.0	C/15313040-15316207	AT3G43358.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 7.8e-69 P-value blast match to GB:AAD12998 pol polyprotein (Ty1_Copia-element) (Zea mays)  
At3g43359	chr3:015316172	0.0	W/15316172-15317224	AT3G43359.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to putative helicase, blastp match of 49% identity and 3.0e-51 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)}  
At3g43360	chr3:015320762	0.0	W/15320762-15322789	AT3G43360.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 6.1e-82 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g43370	chr3:015323338	0.0	W/15323338-15324286	AT3G43370.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05303.1); similar to hypothetical protein 31.t00082 [Brassica oleracea] (GB:ABD65101.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At3g43380	chr3:015324813	0.0	C/15324813-15325460	AT3G43380.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G27800.1); contains domain Hedgehog/intein (Hint) domain (SSF51294)  
At3g43390	chr3:015326264	0.0	C/15326264-15330946	AT3G43390.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G27780.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G36860.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G14770.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1)  
At3g43400	chr3:015332136	0.0	W/15332136-15332346,15332590-15332680,15332759-15332813,15332902-15333010,15333084-15333131,15333213-15333307,15333383-15333395,15333684-15333703	AT3G43400.1  CDS  go_component cytoskeleton|GO:0005856||IEA  go_process phagocytosis|GO:0006909||IEA  go_function molecular_function|GO:0003674||ND  product phagocytosis and cell motility protein ELMO1-related  note phagocytosis and cell motility protein ELMO1-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: phagocytosis; LOCATED IN: cytoskeleton; CONTAINS InterPro DOMAIN/s: Engulfment and cell motility, ELMO (InterPro:IPR006816); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67400.1); Has 518 Blast hits to 518 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 358; Fungi - 4; Plants - 104; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT3G43400.1p  transcript_id AT3G43400.1  protein_id AT3G43400.1p  transcript_id AT3G43400.1  
At3g43402	chr3:015335424	0.0	C/15335424-15335516	AT3G43402.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G43402.1p  transcript_id AT3G43402.1  protein_id AT3G43402.1p  transcript_id AT3G43402.1  
At3g43410	chr3:015340939	0.0	C/15340939-15341109,15340504-15340701	AT3G43410.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35945.1); Has 16 Blast hits to 16 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G43410.1p  transcript_id AT3G43410.1  protein_id AT3G43410.1p  transcript_id AT3G43410.1  
At3g43420	chr3:015345339	0.0	W/15345339-15345545	AT3G43420.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G43420.1p  transcript_id AT3G43420.1  protein_id AT3G43420.1p  transcript_id AT3G43420.1  
At3g43425	chr3:015348513	0.0	W/15348513-15352811	AT3G43425.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.2e-17 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)  
At3g43430	chr3:015354758	0.0	C/15354758-15355261	AT3G43430.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G20885.1); Has 3917 Blast hits to 3904 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 1237; Fungi - 246; Plants - 1924; Viruses - 15; Other Eukaryotes - 495 (source: NCBI BLink).  protein_id AT3G43430.1p  transcript_id AT3G43430.1  protein_id AT3G43430.1p  transcript_id AT3G43430.1  
At3g43431	chr3:015355849	0.0	C/15355849-15355986	AT3G43431.1  CDS  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G43431.1p  transcript_id AT3G43431.1  protein_id AT3G43431.1p  transcript_id AT3G43431.1  
At3g43432	chr3:015359783	0.0	C/15359783-15360004	AT3G43432.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G43432.1p  transcript_id AT3G43432.1  protein_id AT3G43432.1p  transcript_id AT3G43432.1  
At3g43433	chr3:015360394	0.0	W/15360394-15361514	AT3G43433.1  mRNA_TE_gene  pseudo  note Transposable element gene, putative Ta11-related non-LTR retroelement protein, temporary automated functional assignment  
At3g43436	chr3:015361697	0.0	W/15361697-15365347	AT3G43436.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 4.4e-14 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)  
At3g43440	chr3:015367670	0.0	W/15367670-15367776,15368003-15368087,15368183-15368285,15368361-15368418,15369102-15369198,15369296-15369428,15369522-15369579,15369699-15369774	AT3G43440.1  CDS  gene_syn JASMONATE-ZIM-DOMAIN PROTEIN 11, JAZ11, TIFY3A  gene JAZ11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product JAZ11 (JASMONATE-ZIM-DOMAIN PROTEIN 11)  note JASMONATE-ZIM-DOMAIN PROTEIN 11 (JAZ11); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: JAZ12 (JASMONATE-ZIM-DOMAIN PROTEIN 12) (TAIR:AT5G20900.1); Has 341 Blast hits to 203 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 341; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G43440.1p  transcript_id AT3G43440.1  protein_id AT3G43440.1p  transcript_id AT3G43440.1  
At3g43442	chr3:015373325	0.0	W/15373325-15375447	AT3G43442.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 1.3e-33 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At3g43444	chr3:015377568	0.0	W/15377568-15381608	AT3G43444.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.9e-293 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At3g43447	chr3:015382326	0.0	W/15382326-15384011	AT3G43447.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 8.7e-53 P-value blast match to Q9ZQM3 /24-192 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g43450	chr3:015385287	0.0	C/15385287-15385955	AT3G43450.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G20760.1); similar to hypothetical protein 40.t00047 [Brassica oleracea] (GB:ABD65162.1)  
At3g43460	chr3:015387806	0.0	C/15387806-15390501	AT3G43460.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G31150.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains domain Cysteine proteinases (SSF54001)  
At3g43470	chr3:015393070	0.0	C/15393070-15393281,15392620-15392778,15391568-15392573	AT3G43470.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding / zinc ion binding  note nucleic acid binding / zinc ion binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: zinc knuckle (CCHC-type) family protein (TAIR:AT2G15180.1); Has 11 Blast hits to 9 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G43470.1p  transcript_id AT3G43470.1  protein_id AT3G43470.1p  transcript_id AT3G43470.1  
At3g43480	chr3:015393978	0.0	C/15393978-15394463	AT3G43480.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: nucleic acid binding / zinc ion binding (TAIR:AT3G43470.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G43480.1p  transcript_id AT3G43480.1  protein_id AT3G43480.1p  transcript_id AT3G43480.1  
At3g43485	chr3:015394570	0.0	W/15394570-15396641	AT3G43485.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 5.6e-45 P-value blast match to GB:BAA11674 ORF(AA 1-1338) (Ty1_Copia-element) (Nicotiana tabacum)  
At3g43490	chr3:015398859	0.0	W/15398859-15399138,15399330-15399436,15399536-15399702,15399851-15400079	AT3G43490.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc knuckle (CCHC-type) family protein  note zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: zinc knuckle (CCHC-type) family protein (TAIR:AT3G43590.1); Has 41 Blast hits to 41 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 10; Plants - 12; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT3G43490.1p  transcript_id AT3G43490.1  protein_id AT3G43490.1p  transcript_id AT3G43490.1  
At3g43500	chr3:015400257	0.0	C/15400257-15400718	AT3G43500.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G42080.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G43500.1p  transcript_id AT3G43500.1  protein_id AT3G43500.1p  transcript_id AT3G43500.1  
At3g43505	chr3:015402751	0.0	C/15402751-15402799,15402413-15402594	AT3G43505.1  CDS  gene_syn LCR30, Low-molecular-weight cysteine-rich 30  gene LCR30  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR30 (Low-molecular-weight cysteine-rich 30)  note Low-molecular-weight cysteine-rich 30 (LCR30); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); BEST Arabidopsis thaliana protein match is: LCR54 (Low-molecular-weight cysteine-rich 54) (TAIR:AT3G61182.1); Has 22 Blast hits to 22 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G43505.1p  transcript_id AT3G43505.1  protein_id AT3G43505.1p  transcript_id AT3G43505.1  
At3g43510	chr3:015403872	0.0	C/15403872-15405378	AT3G43510.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.3e-11 P-value blast match to GB:BAA11674 ORF(AA 1-1338) (Ty1_Copia-element) (Nicotiana tabacum)  
At3g43520	chr3:015406088	0.0	W/15406088-15406535,15407271-15407405,15407560-15407699	AT3G43520.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0136, Transmembrane (InterPro:IPR005349); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G26240.1); Has 432 Blast hits to 415 proteins in 105 species: Archae - 4; Bacteria - 70; Metazoa - 210; Fungi - 11; Plants - 99; Viruses - 7; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT3G43520.1p  transcript_id AT3G43520.1  protein_id AT3G43520.1p  transcript_id AT3G43520.1  
At3g43521	chr3:015408945	0.0	W/15408945-15409667	AT3G43521.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to putative non-LTR retroelement reverse transcriptase  
At3g43522	chr3:015410131	0.0	W/15410131-15410499	AT3G43522.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to putative Ta11-like non-LTR retroelement protein  
At3g43523	chr3:015413769	0.0	W/15413769-15416019	AT3G43523.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 3.0e-50 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays)  
At3g43524	chr3:015420060	0.0	W/15420060-15420530	AT3G43524.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to putative Ta11-like non-LTR retroelement protein  
At3g43526	chr3:015423007	0.0	W/15423007-15425340	AT3G43526.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 3.0e-29 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g43528	chr3:015426468	0.0	W/15426468-15426713	AT3G43528.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G37120.1)  
At3g43530	chr3:015427145	0.0	C/15427145-15430076	AT3G43530.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15600.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G07770.1); similar to hypothetical protein PFB0115w [Plasmodium falciparum 3D7] (GB:NP_472952.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048)  
At3g43540	chr3:015430770	0.0	W/15430770-15431017,15431095-15431298,15431388-15431445,15431523-15431585,15431883-15431958,15432088-15432203,15432333-15432422,15432666-15432797,15432901-15433035	AT3G43540.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1350 (InterPro:IPR010765); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47860.1); Has 341 Blast hits to 279 proteins in 66 species: Archae - 0; Bacteria - 178; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).  protein_id AT3G43540.1p  transcript_id AT3G43540.1  protein_id AT3G43540.1p  transcript_id AT3G43540.1  
At3g43540	chr3:015431063	0.0	W/15431063-15431298,15431388-15431445,15431523-15431585,15431883-15431958,15432088-15432203,15432333-15432422,15432666-15432797,15432901-15433035	AT3G43540.2  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1350 (InterPro:IPR010765); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47860.1); Has 243 Blast hits to 203 proteins in 61 species: Archae - 0; Bacteria - 130; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT3G43540.2p  transcript_id AT3G43540.2  protein_id AT3G43540.2p  transcript_id AT3G43540.2  
At3g43546	chr3:015440476	0.0	C/15440476-15446894	AT3G43546.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 9.5e-10 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At3g43550	chr3:015448635	0.0	W/15448635-15448878,15448969-15449099,15449188-15449412,15449501-15449760,15449864-15449870	AT3G43550.1  CDS  gene_syn F22J12.1  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function lipase activity|GO:0016298||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298||ISS  product carboxylesterase/ hydrolase, acting on ester bonds / lipase  note carboxylesterase/ hydrolase, acting on ester bonds / lipase; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase, putative (TAIR:AT1G59406.1); Has 1541 Blast hits to 1529 proteins in 76 species: Archae - 0; Bacteria - 51; Metazoa - 1; Fungi - 0; Plants - 1486; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G43550.1p  transcript_id AT3G43550.1  protein_id AT3G43550.1p  transcript_id AT3G43550.1  
At3g43563	chr3:015458938	0.0	C/15458938-15460869	AT3G43563.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, temporary automated functional assignment  
At3g43566	chr3:015461541	0.0	C/15461541-15466805	AT3G43566.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.9e-210 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g43570	chr3:015473345	0.0	W/15473345-15473588,15473680-15473810,15473899-15474123,15474228-15474315,15474403-15474483,15474572-15474765	AT3G43570.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function lipase activity|GO:0016298||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298||ISS  product GDSL-motif lipase, putative  note GDSL-motif lipase, putative; FUNCTIONS IN: hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase, putative (TAIR:AT1G59406.1); Has 1652 Blast hits to 1634 proteins in 111 species: Archae - 0; Bacteria - 125; Metazoa - 1; Fungi - 2; Plants - 1518; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G43570.1p  transcript_id AT3G43570.1  protein_id AT3G43570.1p  transcript_id AT3G43570.1  
At3g43572	chr3:015479021	0.0	C/15479021-15479233	AT3G43572.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G43572.1p  transcript_id AT3G43572.1  protein_id AT3G43572.1p  transcript_id AT3G43572.1  
At3g43574	chr3:015479819	0.0	C/15479819-15480028	AT3G43574.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G43574.1p  transcript_id AT3G43574.1  protein_id AT3G43574.1p  transcript_id AT3G43574.1  
At3g43571	chr3:015480920	0.0	W/15480920-15482338	AT3G43571.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 2.5e-57 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At3g43573	chr3:015487248	0.0	W/15487248-15491948	AT3G43573.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.7e-27 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At3g43575	chr3:015493460	0.0	C/15493460-15497791	AT3G43575.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 9.0e-44 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At3g43580	chr3:015502992	0.0	W/15502992-15503606	AT3G43580.1  CDS  go_component beta-galactosidase complex|GO:0009341||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  product beta-galactosidase  note beta-galactosidase; FUNCTIONS IN: beta-galactosidase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: beta-galactosidase complex; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G43580.1p  transcript_id AT3G43580.1  protein_id AT3G43580.1p  transcript_id AT3G43580.1  
At3g43583	chr3:015506774	0.0	C/15506774-15507076	AT3G43583.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 13230 Blast hits to 4668 proteins in 535 species: Archae - 12; Bacteria - 2483; Metazoa - 2246; Fungi - 915; Plants - 2734; Viruses - 914; Other Eukaryotes - 3926 (source: NCBI BLink).  protein_id AT3G43583.1p  transcript_id AT3G43583.1  protein_id AT3G43583.1p  transcript_id AT3G43583.1  
At3g43586	chr3:015507668	0.0	C/15507668-15509301	AT3G43586.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At3g43590	chr3:015509753	0.0	W/15509753-15510067,15510232-15510372,15510465-15510626,15510725-15510883,15511138-15511254,15511393-15511626,15511728-15512255	AT3G43590.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function nucleic acid binding|GO:0003676||ISS  product zinc knuckle (CCHC-type) family protein  note zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, CCHC retroviral-type (InterPro:IPR013084); BEST Arabidopsis thaliana protein match is: zinc knuckle (CCHC-type) family protein (TAIR:AT5G36240.1); Has 13506 Blast hits to 9951 proteins in 365 species: Archae - 0; Bacteria - 49; Metazoa - 2783; Fungi - 1082; Plants - 832; Viruses - 7462; Other Eukaryotes - 1298 (source: NCBI BLink).  protein_id AT3G43590.1p  transcript_id AT3G43590.1  protein_id AT3G43590.1p  transcript_id AT3G43590.1  
At3g43600	chr3:015517243	0.0	C/15517243-15517375,15515332-15517163,15515049-15515258,15514754-15514972,15513714-15514670,15513524-15513619,15513343-15513441,15513078-15513267,15512778-15513007	AT3G43600.1  CDS  gene_syn AAO2, ALDEHYDE OXIDASE 2  gene AAO2  function Encodes aldehyde oxidase AAO2.  go_process abscisic acid biosynthetic process|GO:0009688|10972874|TAS  go_function aldehyde oxidase activity|GO:0004031|10739959|IDA  product AAO2 (ALDEHYDE OXIDASE 2); aldehyde oxidase  note ALDEHYDE OXIDASE 2 (AAO2); FUNCTIONS IN: aldehyde oxidase activity; INVOLVED IN: abscisic acid biosynthetic process; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde oxidase/xanthine dehydrogenase (InterPro:IPR016208), Ferredoxin (InterPro:IPR001041), Molybdopterin dehydrogenase, FAD-binding (InterPro:IPR002346), Oxidoreductase, molybdopterin binding (InterPro:IPR000572), [2Fe-2S]-binding (InterPro:IPR002888), FAD-binding, type 2 (InterPro:IPR016166), CO dehydrogenase flavoprotein, C-terminal (InterPro:IPR005107), 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 (InterPro:IPR016169), Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead (InterPro:IPR000674), Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding (InterPro:IPR008274); BEST Arabidopsis thaliana protein match is: AAO1 (ARABIDOPSIS ALDEHYDE OXIDASE 1); aldehyde oxidase/ indole-3-acetaldehyde oxidase (TAIR:AT5G20960.2); Has 13456 Blast hits to 13092 proteins in 777 species: Archae - 169; Bacteria - 6444; Metazoa - 964; Fungi - 74; Plants - 146; Viruses - 0; Other Eukaryotes - 5659 (source: NCBI BLink).  protein_id AT3G43600.1p  transcript_id AT3G43600.1  protein_id AT3G43600.1p  transcript_id AT3G43600.1  
At3g43610	chr3:015523775	0.0	C/15523775-15523927,15522785-15523486,15522147-15522344,15521753-15522061,15521254-15521369,15520073-15521176,15519794-15519935,15519545-15519701,15519300-15519463,15519030-15519112,15518617-15518716,15518314-15518375,15518021-15518180,15517772-15517945	AT3G43610.1  CDS  go_component spindle pole|GO:0000922||IEA  go_component microtubule organizing center|GO:0005815||IEA  go_component chloroplast|GO:0009507||IEA  go_process microtubule cytoskeleton organization|GO:0000226||IEA  go_function tubulin binding|GO:0015631||ISS  product tubulin binding  note tubulin binding; FUNCTIONS IN: tubulin binding; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: chloroplast, spindle pole, microtubule organizing center; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: SPC98 (SPINDLE POLE BODY COMPONENT 98); tubulin binding (TAIR:AT5G06680.1); Has 847 Blast hits to 758 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 477; Fungi - 181; Plants - 101; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT3G43610.1p  transcript_id AT3G43610.1  protein_id AT3G43610.1p  transcript_id AT3G43610.1  
At3g43620	chr3:015525398	0.0	W/15525398-15526063	AT3G43620.1  mRNA_TE_gene  pseudo  note Transposable element gene, retrotransposon family, predicted proteins - Arabidopsis thaliana  
At3g43622	chr3:015527180	0.0	C/15527180-15530149	AT3G43622.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.7e-37 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At3g43623	chr3:015530342	0.0	W/15530342-15530473	AT3G43623.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G43623.1p  transcript_id AT3G43623.1  protein_id AT3G43623.1p  transcript_id AT3G43623.1  
At3g43625	chr3:015532185	0.0	C/15532185-15538492	AT3G43625.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.3e-32 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)  
At3g43630	chr3:015538816	0.0	W/15538816-15539418	AT3G43630.1  CDS  gene_syn F22J12.3  go_process biological_process|GO:0008150||ND  product nodulin, putative  note nodulin, putative; INVOLVED IN: biological_process unknown; EXPRESSED IN: cotyledon, leaf; EXPRESSED DURING: 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF125, transmembrane (InterPro:IPR008217); BEST Arabidopsis thaliana protein match is: nodulin, putative (TAIR:AT3G43660.1); Has 1020 Blast hits to 1016 proteins in 333 species: Archae - 33; Bacteria - 618; Metazoa - 0; Fungi - 66; Plants - 96; Viruses - 0; Other Eukaryotes - 207 (source: NCBI BLink).  protein_id AT3G43630.1p  transcript_id AT3G43630.1  protein_id AT3G43630.1p  transcript_id AT3G43630.1  
At3g43635	chr3:015541165	0.0	W/15541165-15545922	AT3G43635.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to gb|AAO73521.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At3g43640	chr3:015546872	0.0	W/15546872-15548354	AT3G43640.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.4e-25 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At3g43650	chr3:015549783	0.0	C/15549783-15551111	AT3G43650.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 3.0e-43 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At3g43652	chr3:015552162	0.0	C/15552162-15554963	AT3G43652.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 5.2e-105 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays)  
At3g43654	chr3:015555355	0.0	C/15555355-15559710	AT3G43654.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 4.7e-150 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus)  
At3g43657	chr3:015561486	0.0	C/15561486-15562115	AT3G43657.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 1.7e-16 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota)  
At3g43660	chr3:015565332	0.0	W/15565332-15565928	AT3G43660.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product nodulin, putative  note nodulin, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF125, transmembrane (InterPro:IPR008217); BEST Arabidopsis thaliana protein match is: nodulin, putative (TAIR:AT3G43630.1); Has 1038 Blast hits to 1034 proteins in 345 species: Archae - 39; Bacteria - 639; Metazoa - 0; Fungi - 57; Plants - 101; Viruses - 0; Other Eukaryotes - 202 (source: NCBI BLink).  protein_id AT3G43660.1p  transcript_id AT3G43660.1  protein_id AT3G43660.1p  transcript_id AT3G43660.1  
At3g43670	chr3:015567144	0.0	W/15567144-15567578,15567684-15568155,15568265-15568563,15568645-15568758,15568836-15569288,15569363-15569460,15569542-15569734	AT3G43670.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process cellular amine metabolic process|GO:0009308||IEA  go_function copper ion binding|GO:0005507||IEA  go_function amine oxidase activity|GO:0008131||IEA  go_function quinone binding|GO:0048038||IEA  go_function copper ion binding|GO:0005507||ISS  product copper amine oxidase, putative  note copper amine oxidase, putative; FUNCTIONS IN: amine oxidase activity, quinone binding, copper ion binding; INVOLVED IN: cellular amine metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal region (InterPro:IPR016182), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: copper amine oxidase, putative (TAIR:AT1G62810.1); Has 1084 Blast hits to 1082 proteins in 163 species: Archae - 4; Bacteria - 242; Metazoa - 216; Fungi - 284; Plants - 134; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink).  protein_id AT3G43670.1p  transcript_id AT3G43670.1  protein_id AT3G43670.1p  transcript_id AT3G43670.1  
At3g43675	chr3:015571415	0.0	C/15571415-15575045	AT3G43675.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.3e-132 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At3g43680	chr3:015576456	0.0	W/15576456-15578269	AT3G43680.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G60930.1); similar to hypothetical protein TTHERM_00155290 [Tetrahymena thermophila SB210] (GB:XP_001009657.1)  
At3g43681	chr3:015578892	0.0	C/15578892-15584429	AT3G43681.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 3.6e-219 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At3g43682	chr3:015584589	0.0	W/15584589-15584785,15585122-15585184,15585234-15585426	AT3G43682.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G43682.1p  transcript_id AT3G43682.1  protein_id AT3G43682.1p  transcript_id AT3G43682.1  
At3g43684	chr3:015585532	0.0	C/15585532-15587105	AT3G43684.1  mRNA_TE_gene  pseudo  note Transposable element gene, contains InterPro domain Retrotransposon gag protein; (InterPro:IPR005162)  
At3g43686	chr3:015587720	0.0	W/15587720-15590947	AT3G43686.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 2.0e-142 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At3g43688	chr3:015592267	0.0	W/15592267-15597394	AT3G43688.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At3g43690	chr3:015598179	0.0	W/15598179-15600798	AT3G43690.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family protein, has a 1.4e-29 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At3g43700	chr3:015601944	0.0	W/15601944-15602365,15602502-15602847,15602936-15603224,15603309-15603499	AT3G43700.1  CDS  gene_syn ATBPM6, BTB-POZ and MATH domain 6  gene ATBPM6  go_function protein binding|GO:0005515||IEA  go_function protein binding|GO:0005515||ISS  product ATBPM6 (BTB-POZ and MATH domain 6); protein binding  note BTB-POZ and MATH domain 6 (ATBPM6); FUNCTIONS IN: protein binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: ATBPM5 (BTB-POZ and MATH domain 5); protein binding (TAIR:AT5G21010.1); Has 6150 Blast hits to 5952 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 4947; Fungi - 96; Plants - 828; Viruses - 58; Other Eukaryotes - 221 (source: NCBI BLink).  protein_id AT3G43700.1p  transcript_id AT3G43700.1  protein_id AT3G43700.1p  transcript_id AT3G43700.1  
At3g43710	chr3:015605608	0.0	W/15605608-15606744	AT3G43710.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G23580.1); Has 1939 Blast hits to 1688 proteins in 129 species: Archae - 6; Bacteria - 37; Metazoa - 1094; Fungi - 4; Plants - 661; Viruses - 66; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT3G43710.1p  transcript_id AT3G43710.1  protein_id AT3G43710.1p  transcript_id AT3G43710.1  
At3g43715	chr3:015606866	0.0	C/15606866-15607606	AT3G43715.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to putative non-LTR retroelement reverse transcriptase  
At3g43720	chr3:015616736	0.0	C/15616736-15617099,15615863-15615943,15615549-15615679	AT3G43720.2  CDS  go_component membrane|GO:0016020|11152613|ISS  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT2G27130.1); Has 404 Blast hits to 402 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 404; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G43720.2p  transcript_id AT3G43720.2  protein_id AT3G43720.2p  transcript_id AT3G43720.2  
At3g43720	chr3:015616736	0.0	C/15616736-15617099,15615863-15615943,15615549-15615685	AT3G43720.1  CDS  go_component membrane|GO:0016020|11152613|ISS  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT2G27130.1); Has 405 Blast hits to 401 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 405; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G43720.1p  transcript_id AT3G43720.1  protein_id AT3G43720.1p  transcript_id AT3G43720.1  
At3g43722	chr3:015620912	0.0	C/15620912-15621007	AT3G43722.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G43722.1p  transcript_id AT3G43722.1  protein_id AT3G43722.1p  transcript_id AT3G43722.1  
At3g43723	chr3:015622167	0.0	W/15622167-15626684	AT3G43723.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 8.2e-252 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At3g43726	chr3:015629330	0.0	C/15629330-15630085	AT3G43726.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to P0703B11.15, blastp match of 44% identity and 1.3e-42 P-value to GP|18844826|dbj|BAB85296.1||AP003302 P0703B11.15 {Oryza sativa (japonica cultivar-group)}  
At3g43730	chr3:015633913	0.0	W/15633913-15636942	AT3G43730.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to ring-infested erythrocyte surface antigen, contains Pfam profile PF03384: Drosophila protein of unknown function, DUF287; blastp match of 34% identity and 2.6e-07 P-value to GP|6525240|gb|AAF15366.1|AF206632_1|AF206632 ring-infested erythrocyte surface antigen {Plasmodium falciparum}  
At3g43740	chr3:015644127	0.0	W/15644127-15644350,15644588-15644659,15644750-15644893,15645036-15645107,15645214-15645285,15645374-15645446	AT3G43740.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein, putative (TAIR:AT5G21090.1); Has 46091 Blast hits to 10999 proteins in 538 species: Archae - 35; Bacteria - 1487; Metazoa - 3857; Fungi - 312; Plants - 37771; Viruses - 0; Other Eukaryotes - 2629 (source: NCBI BLink).  protein_id AT3G43740.1p  transcript_id AT3G43740.1  protein_id AT3G43740.1p  transcript_id AT3G43740.1  
At3g43740	chr3:015644127	0.0	W/15644127-15644350,15644588-15644893,15645036-15645107,15645214-15645285,15645374-15645446	AT3G43740.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein, putative (TAIR:AT5G21090.1); Has 30110 Blast hits to 8485 proteins in 461 species: Archae - 19; Bacteria - 908; Metazoa - 1339; Fungi - 119; Plants - 25977; Viruses - 0; Other Eukaryotes - 1748 (source: NCBI BLink).  protein_id AT3G43740.2p  transcript_id AT3G43740.2  protein_id AT3G43740.2p  transcript_id AT3G43740.2  
At3g43750	chr3:015646460	0.0	W/15646460-15646738,15646805-15647566	AT3G43750.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G45580.1); Has 1773 Blast hits to 1762 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 860; Fungi - 280; Plants - 344; Viruses - 0; Other Eukaryotes - 289 (source: NCBI BLink).  protein_id AT3G43750.1p  transcript_id AT3G43750.1  protein_id AT3G43750.1p  transcript_id AT3G43750.1  
At3g43760	chr3:015648213	0.0	C/15648213-15649422	AT3G43760.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G11710.1); similar to putative AP endonuclease/reverse transcriptase [Brassica napus] (GB:AAM82604.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446)  
At3g43770	chr3:015650587	0.0	C/15650587-15651000	AT3G43770.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G45230.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G39205.1); contains domain GAG-POL-RELATED RETROTRANSPOSON (PTHR11439)  
At3g43780	chr3:015651304	0.0	W/15651304-15653034	AT3G43780.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, predicted proteins, Arabidopsis thaliana  
At3g43790	chr3:015655443	0.0	W/15655443-15655584,15655665-15655705,15655788-15655848,15655921-15656023,15656116-15656218,15656331-15656384,15656480-15656542,15656629-15656678,15656774-15656849,15657086-15657280,15657402-15657489,15657769-15657854,15658066-15658173,15658247-15658291,15658387-15658475,15658589-15658632,15658760-15658848	AT3G43790.1  CDS  gene_syn ZIFL2, ZINC INDUCED FACILITATOR-like 2  gene ZIFL2  go_component membrane|GO:0016020||ISS  go_process response to nematode|GO:0009624|16478044|IEP  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product ZIFL2 (ZINC INDUCED FACILITATOR-like 2); carbohydrate transmembrane transporter/ sugar:hydrogen symporter  note ZINC INDUCED FACILITATOR-like 2 (ZIFL2); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: response to nematode; LOCATED IN: membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ZIF1 (ZINC INDUCED FACILITATOR 1); carbohydrate transmembrane transporter/ sugar:hydrogen symporter/ tetracycline:hydrogen antiporter (TAIR:AT5G13740.1); Has 12572 Blast hits to 12154 proteins in 1537 species: Archae - 228; Bacteria - 8331; Metazoa - 939; Fungi - 1499; Plants - 189; Viruses - 0; Other Eukaryotes - 1386 (source: NCBI BLink).  protein_id AT3G43790.1p  transcript_id AT3G43790.1  protein_id AT3G43790.1p  transcript_id AT3G43790.1  
At3g43790	chr3:015655443	0.0	W/15655443-15655584,15655665-15655705,15655788-15655848,15655921-15656023,15656116-15656218,15656331-15656384,15656480-15656542,15656629-15656678,15656774-15656849,15657086-15657280,15657402-15657489,15657769-15657854,15658066-15658173,15658247-15658291,15658387-15658475,15658589-15658650,15658760-15658848	AT3G43790.2  CDS  gene_syn ZIFL2, ZINC INDUCED FACILITATOR-like 2  gene ZIFL2  go_component membrane|GO:0016020||ISS  go_process response to nematode|GO:0009624|16478044|IEP  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product ZIFL2 (ZINC INDUCED FACILITATOR-like 2); carbohydrate transmembrane transporter/ sugar:hydrogen symporter  note ZINC INDUCED FACILITATOR-like 2 (ZIFL2); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: response to nematode; LOCATED IN: membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ZIF1 (ZINC INDUCED FACILITATOR 1); carbohydrate transmembrane transporter/ sugar:hydrogen symporter/ tetracycline:hydrogen antiporter (TAIR:AT5G13740.1); Has 12559 Blast hits to 12104 proteins in 1535 species: Archae - 228; Bacteria - 8319; Metazoa - 945; Fungi - 1500; Plants - 186; Viruses - 0; Other Eukaryotes - 1381 (source: NCBI BLink).  protein_id AT3G43790.2p  transcript_id AT3G43790.2  protein_id AT3G43790.2p  transcript_id AT3G43790.2  
At3g43790	chr3:015655443	0.0	W/15655443-15655584,15655665-15655705,15655788-15655848,15655921-15656023,15656116-15656218,15656331-15656384,15656480-15656542,15656629-15656678,15656774-15656849,15657086-15657280,15657402-15657489,15657769-15657854,15658066-15658173,15658247-15658291,15658387-15658475,15658589-15658650,15658760-15658848	AT3G43790.3  CDS  gene_syn ZIFL2, ZINC INDUCED FACILITATOR-like 2  gene ZIFL2  go_component membrane|GO:0016020||ISS  go_process response to nematode|GO:0009624|16478044|IEP  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product ZIFL2 (ZINC INDUCED FACILITATOR-like 2); carbohydrate transmembrane transporter/ sugar:hydrogen symporter  note ZINC INDUCED FACILITATOR-like 2 (ZIFL2); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: response to nematode; LOCATED IN: membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ZIF1 (ZINC INDUCED FACILITATOR 1); carbohydrate transmembrane transporter/ sugar:hydrogen symporter/ tetracycline:hydrogen antiporter (TAIR:AT5G13740.1); Has 12559 Blast hits to 12104 proteins in 1535 species: Archae - 228; Bacteria - 8319; Metazoa - 945; Fungi - 1500; Plants - 186; Viruses - 0; Other Eukaryotes - 1381 (source: NCBI BLink).  protein_id AT3G43790.3p  transcript_id AT3G43790.3  protein_id AT3G43790.3p  transcript_id AT3G43790.3  
At3g43800	chr3:015660929	0.0	W/15660929-15661255,15661428-15661784	AT3G43800.1  CDS  gene_syn ATGSTU27, GLUTATHIONE S-TRANSFERASE TAU 27  gene ATGSTU27  function Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27); glutathione transferase  note GLUTATHIONE S-TRANSFERASE TAU 27 (ATGSTU27); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTU19 (GLUTATHIONE S-TRANSFERASE TAU 19); glutathione binding / glutathione transferase (TAIR:AT1G78380.1); Has 3093 Blast hits to 3086 proteins in 601 species: Archae - 0; Bacteria - 1231; Metazoa - 306; Fungi - 107; Plants - 1026; Viruses - 0; Other Eukaryotes - 423 (source: NCBI BLink).  protein_id AT3G43800.1p  transcript_id AT3G43800.1  protein_id AT3G43800.1p  transcript_id AT3G43800.1  
At3g43810	chr3:015666280	0.0	C/15666280-15666355,15664619-15664992	AT3G43810.1  CDS  gene_syn CALMODULIN 7, CAM7  gene CAM7  function EF hand domain protein encodes a calmodulin. Can functionally complement a yeast CaM mutant.  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_process detection of calcium ion|GO:0005513|11855649|ISS  go_process regulation of photomorphogenesis|GO:0010099|18621945|IMP  go_process calcium-mediated signaling|GO:0019722|11855649|IGI  go_function calcium ion binding|GO:0005509||ISS  product CAM7 (CALMODULIN 7); calcium ion binding  note CALMODULIN 7 (CAM7); FUNCTIONS IN: calcium ion binding; INVOLVED IN: detection of calcium ion, calcium-mediated signaling, regulation of photomorphogenesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: CAM3 (CALMODULIN 3); calcium ion binding (TAIR:AT3G56800.1); Has 26519 Blast hits to 18174 proteins in 1446 species: Archae - 0; Bacteria - 129; Metazoa - 12446; Fungi - 5646; Plants - 4207; Viruses - 0; Other Eukaryotes - 4091 (source: NCBI BLink).  protein_id AT3G43810.1p  transcript_id AT3G43810.1  protein_id AT3G43810.1p  transcript_id AT3G43810.1  
At3g43820	chr3:015668523	0.0	C/15668523-15669776	AT3G43820.1  pseudogenic_transcript  pseudo  note pseudogene, copper amine oxidase protein family, similar to SP|Q43077 Amine oxidase (copper-containing) precursor (EC 1.4.3.6) {Pisum sativum}; contains Pfam profile PF01179: Copper amine oxidase, enzyme domain; blastp match of 57% identity and 2.6e-48 P-value to GP|5733089|gb|AAD49420.1|AF172681_1|AF172681 amine oxidase {Canavalia lineata}  
At3g43825	chr3:015670223	0.0	W/15670223-15674704	AT3G43825.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 8.3e-106 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At3g43826	chr3:015675393	0.0	C/15675393-15676148	AT3G43826.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At3g43828	chr3:015677383	0.0	C/15677383-15678009	AT3G43828.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 5.8e-16 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota)  
At3g43829	chr3:015678709	0.0	C/15678709-15678855	AT3G43829.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G43829.1p  transcript_id AT3G43829.1  protein_id AT3G43829.1p  transcript_id AT3G43829.1  
At3g43830	chr3:015678861	0.0	C/15678861-15679850	AT3G43830.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.0e-15 P-value blast match to GB:226407 retrotransposon del1-46 (Gypsy_Ty3-element) (Lilium henryi)  
At3g43832	chr3:015682293	0.0	C/15682293-15682874	AT3G43832.1  pseudogenic_transcript  pseudo  note pseudogene, similar to putative carboxyl-terminal proteinase, blastp match of 45% identity and 6.4e-30 P-value to GP|21389708|gb|AAK84952.2||AY039662 putative carboxyl-terminal proteinase {Gossypium hirsutum}  
At3g43833	chr3:015687706	0.0	W/15687706-15688109,15688356-15688632	AT3G43833.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G43833.1p  transcript_id AT3G43833.1  protein_id AT3G43833.1p  transcript_id AT3G43833.1  
At3g43835	chr3:015692317	0.0	W/15692317-15697566	AT3G43835.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 3.4e-26 P-value blast match to GB:NP_038604 L1 repeat, Tf subfamily, member 26 (LINE-element) (Mus musculus)  
At3g43840	chr3:015700352	0.0	W/15700352-15700446,15700600-15700654,15700751-15700855	AT3G43840.1  CDS  go_component cytoplasm|GO:0005737||IEA  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function oxidoreductase activity, acting on the CH-CH group of donors|GO:0016627||IEA  product oxidoreductase, acting on the CH-CH group of donors  note oxidoreductase, acting on the CH-CH group of donors; FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system, integral to membrane, cytoplasm; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal (InterPro:IPR001104); BEST Arabidopsis thaliana protein match is: 3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein (TAIR:AT2G16530.2); Has 102 Blast hits to 102 proteins in 25 species: Archae - 0; Bacteria - 2; Metazoa - 48; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT3G43840.1p  transcript_id AT3G43840.1  protein_id AT3G43840.1p  transcript_id AT3G43840.1  
At3g43850	chr3:015703959	0.0	C/15703959-15704152,15703573-15703868,15702319-15702475,15702085-15702250	AT3G43850.1  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G21940.1); Has 126 Blast hits to 126 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G43850.1p  transcript_id AT3G43850.1  protein_id AT3G43850.1p  transcript_id AT3G43850.1  
At3g43860	chr3:015707183	0.0	W/15707183-15707407,15707496-15707708,15707818-15708018,15708198-15708275,15708384-15708533,15708610-15708718,15708813-15708976,15709118-15709438	AT3G43860.1  CDS  gene_syn Arabidopsis thaliana Glycosyl Hydrolase 9A4, AtGH9A4  gene AtGH9A4  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product AtGH9A4 (Arabidopsis thaliana Glycosyl Hydrolase 9A4); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds  note Arabidopsis thaliana Glycosyl Hydrolase 9A4 (AtGH9A4); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: AtGH9B13 (Arabidopsis thaliana glycosyl hydrolase 9B13); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT4G02290.1); Has 1126 Blast hits to 1121 proteins in 190 species: Archae - 0; Bacteria - 326; Metazoa - 139; Fungi - 14; Plants - 619; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT3G43860.1p  transcript_id AT3G43860.1  protein_id AT3G43860.1p  transcript_id AT3G43860.1  
At3g43862	chr3:015714896	0.0	C/15714896-15716641	AT3G43862.1  mRNA_TE_gene  pseudo  note Transposable element gene, Athila retroelement ORF2 -related, temporary automated functional assignment  
At3g43863	chr3:015717074	0.0	C/15717074-15717829	AT3G43863.1  mRNA_TE_gene  pseudo  note Transposable element gene  
At3g43864	chr3:015718055	0.0	C/15718055-15720790	AT3G43864.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 0. P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At3g43867	chr3:015721998	0.0	C/15721998-15726638	AT3G43867.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 8.2e-284 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At3g43870	chr3:015728176	0.0	W/15728176-15728260,15728347-15728445,15728540-15728622,15728854-15729150	AT3G43870.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44210.1); Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G43870.1p  transcript_id AT3G43870.1  protein_id AT3G43870.1p  transcript_id AT3G43870.1  
At3g43880	chr3:015738496	0.0	C/15738496-15738616,15738173-15738315	AT3G43880.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G07526.3); Has 10 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G43880.1p  transcript_id AT3G43880.1  protein_id AT3G43880.1p  transcript_id AT3G43880.1  
At3g43890	chr3:015741468	0.0	C/15741468-15743453	AT3G43890.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT1G69150.1); Has 1145 Blast hits to 539 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 39; Fungi - 1; Plants - 1090; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT3G43890.1p  transcript_id AT3G43890.1  protein_id AT3G43890.1p  transcript_id AT3G43890.1  
At3g43900	chr3:015746840	0.0	W/15746840-15747094	AT3G43900.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43910.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G43900.1p  transcript_id AT3G43900.1  protein_id AT3G43900.1p  transcript_id AT3G43900.1  
At3g43910	chr3:015751387	0.0	W/15751387-15751548,15752000-15752105,15752191-15752237,15752330-15752449,15752537-15752689	AT3G43910.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G26840.1); Has 659 Blast hits to 659 proteins in 10 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 635 (source: NCBI BLink).  protein_id AT3G43910.1p  transcript_id AT3G43910.1  protein_id AT3G43910.1p  transcript_id AT3G43910.1  
At3g43920	chr3:015753548	0.0	W/15753548-15753681,15753769-15753934,15754077-15754190,15754587-15754721,15754818-15754891,15755003-15755066,15755142-15755273,15755370-15755522,15755653-15755782,15755868-15755973,15756053-15756245,15756334-15756494,15756577-15756902,15757102-15757373,15757459-15757979,15758060-15758154,15758262-15758491,15758580-15758789,15758872-15759339,15759430-15759702,15759801-15760127,15760199-15760331,15760433-15760544,15760626-15760830	AT3G43920.2  CDS  gene_syn ATDCL3, DCL3, DICER-LIKE 3  gene DCL3  function Encodes a ribonuclease III family protein that is required for endogenous RDR2-dependent siRNA (but not miRNA) formation.  go_component nucleus|GO:0005634|15024409|IDA  go_component nucleolus|GO:0005730|16839878|IDA  go_process RNA processing|GO:0006396||ISS  go_process maintenance of DNA methylation|GO:0010216|16699516|IMP  go_process RNA interference, production of ta-siRNAs|GO:0010267|16699516|IMP  go_process RNA interference, production of siRNA|GO:0030422|15024409|IMP  go_process gene silencing by miRNA, production of miRNAs|GO:0035196|16810317|IGI  go_function RNA binding|GO:0003723||ISS  go_function double-stranded RNA binding|GO:0003725|15821876|IDA  go_function ribonuclease III activity|GO:0004525||ISS  product ribonuclease III family protein  note DICER-LIKE 3 (DCL3); FUNCTIONS IN: double-stranded RNA binding, RNA binding, ribonuclease III activity; INVOLVED IN: maintenance of DNA methylation, RNA interference, production of siRNA, RNA interference, production of ta-siRNAs, gene silencing by miRNA, production of miRNAs, RNA processing; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), Argonaute and Dicer protein, PAZ (InterPro:IPR003100), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), Ribonuclease III (InterPro:IPR000999); BEST Arabidopsis thaliana protein match is: DCL1 (DICER-LIKE 1); ATP-dependent helicase/ double-stranded RNA binding / protein binding / ribonuclease III (TAIR:AT1G01040.1).  protein_id AT3G43920.2p  transcript_id AT3G43920.2  protein_id AT3G43920.2p  transcript_id AT3G43920.2  
At3g43920	chr3:015753548	0.0	W/15753548-15753681,15753769-15753934,15754077-15754190,15754587-15754721,15755142-15755273,15755370-15755522,15755653-15755782,15755868-15755973,15756053-15756245,15756334-15756494,15756577-15756902,15757102-15757373,15757459-15757979,15758060-15758154,15758262-15758491,15758580-15758789,15758872-15759339,15759430-15759702,15759801-15760127,15760199-15760331,15760433-15760544,15760626-15760830	AT3G43920.1  CDS  gene_syn ATDCL3, DCL3, DICER-LIKE 3  gene DCL3  function Encodes a ribonuclease III family protein that is required for endogenous RDR2-dependent siRNA (but not miRNA) formation.  go_component nucleus|GO:0005634|15024409|IDA  go_component nucleolus|GO:0005730|16839878|IDA  go_process RNA processing|GO:0006396||ISS  go_process maintenance of DNA methylation|GO:0010216|16699516|IMP  go_process RNA interference, production of ta-siRNAs|GO:0010267|16699516|IMP  go_process RNA interference, production of siRNA|GO:0030422|15024409|IMP  go_process gene silencing by miRNA, production of miRNAs|GO:0035196|16810317|IGI  go_function RNA binding|GO:0003723||ISS  go_function double-stranded RNA binding|GO:0003725|15821876|IDA  go_function ribonuclease III activity|GO:0004525||ISS  product ribonuclease III family protein  note DICER-LIKE 3 (DCL3); FUNCTIONS IN: double-stranded RNA binding, RNA binding, ribonuclease III activity; INVOLVED IN: maintenance of DNA methylation, RNA interference, production of siRNA, RNA interference, production of ta-siRNAs, gene silencing by miRNA, production of miRNAs, RNA processing; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), Argonaute and Dicer protein, PAZ (InterPro:IPR003100), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), Ribonuclease III (InterPro:IPR000999); BEST Arabidopsis thaliana protein match is: DCL1 (DICER-LIKE 1); ATP-dependent helicase/ double-stranded RNA binding / protein binding / ribonuclease III (TAIR:AT1G01040.1); Has 8747 Blast hits to 5515 proteins in 1491 species: Archae - 109; Bacteria - 4430; Metazoa - 1169; Fungi - 484; Plants - 186; Viruses - 35; Other Eukaryotes - 2334 (source: NCBI BLink).  protein_id AT3G43920.1p  transcript_id AT3G43920.1  protein_id AT3G43920.1p  transcript_id AT3G43920.1  
At3g43920	chr3:015753548	0.0	W/15753548-15753681,15753769-15753943,15754077-15754190,15754587-15754721,15754818-15754891,15755003-15755066,15755142-15755273,15755370-15755522,15755653-15755782,15755868-15755973,15756053-15756245,15756334-15756494,15756577-15756902,15757102-15757373,15757459-15757979,15758060-15758154,15758262-15758491,15758580-15758789,15758872-15759339,15759430-15759702,15759801-15760127,15760199-15760331,15760433-15760544,15760626-15760830	AT3G43920.3  CDS  gene_syn ATDCL3, DCL3, DICER-LIKE 3  gene DCL3  function Encodes a ribonuclease III family protein that is required for endogenous RDR2-dependent siRNA (but not miRNA) formation.  go_component nucleus|GO:0005634|15024409|IDA  go_component nucleolus|GO:0005730|16839878|IDA  go_process RNA processing|GO:0006396||ISS  go_process maintenance of DNA methylation|GO:0010216|16699516|IMP  go_process RNA interference, production of ta-siRNAs|GO:0010267|16699516|IMP  go_process RNA interference, production of siRNA|GO:0030422|15024409|IMP  go_process gene silencing by miRNA, production of miRNAs|GO:0035196|16810317|IGI  go_function RNA binding|GO:0003723||ISS  go_function double-stranded RNA binding|GO:0003725|15821876|IDA  go_function ribonuclease III activity|GO:0004525||ISS  product ribonuclease III family protein  note DICER-LIKE 3 (DCL3); FUNCTIONS IN: double-stranded RNA binding, RNA binding, ribonuclease III activity; INVOLVED IN: maintenance of DNA methylation, RNA interference, production of siRNA, RNA interference, production of ta-siRNAs, gene silencing by miRNA, production of miRNAs, RNA processing; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Argonaute and Dicer protein, PAZ (InterPro:IPR003100), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), Ribonuclease III (InterPro:IPR000999); BEST Arabidopsis thaliana protein match is: DCL1 (DICER-LIKE 1); ATP-dependent helicase/ double-stranded RNA binding / protein binding / ribonuclease III (TAIR:AT1G01040.1).  protein_id AT3G43920.3p  transcript_id AT3G43920.3  protein_id AT3G43920.3p  transcript_id AT3G43920.3  
At3g43930	chr3:015763056	0.0	C/15763056-15763263,15762820-15762911,15762615-15762717,15762336-15762541,15762125-15762256,15761933-15762040,15761779-15761868,15761491-15761696,15761205-15761394	AT3G43930.2  CDS  go_component intracellular|GO:0005622||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G26270.1); Has 208 Blast hits to 206 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 52; Plants - 24; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT3G43930.2p  transcript_id AT3G43930.2  protein_id AT3G43930.2p  transcript_id AT3G43930.2  
At3g43930	chr3:015763056	0.0	C/15763056-15763263,15762820-15762911,15762615-15762717,15762336-15762541,15762125-15762256,15761933-15762040,15761779-15761868,15761491-15761696,15761241-15761394,15760948-15761157	AT3G43930.1  CDS  go_component intracellular|GO:0005622||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G26270.1); Has 208 Blast hits to 206 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 52; Plants - 24; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT3G43930.1p  transcript_id AT3G43930.1  protein_id AT3G43930.1p  transcript_id AT3G43930.1  
At3g43940	chr3:015765298	0.0	C/15765298-15765371,15765141-15765222,15764874-15765020,15764729-15764784,15764538-15764658,15764265-15764393	AT3G43940.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 18 Blast hits to 18 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G43940.1p  transcript_id AT3G43940.1  protein_id AT3G43940.1p  transcript_id AT3G43940.1  
At3g43950	chr3:015766361	0.0	W/15766361-15767014	AT3G43950.1  CDS  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product phosphotransferase, alcohol group as acceptor  note phosphotransferase, alcohol group as acceptor; FUNCTIONS IN: phosphotransferase activity, alcohol group as acceptor; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3- and 4-kinase, catalytic (InterPro:IPR000403); BEST Arabidopsis thaliana protein match is: phosphatidylinositol 3- and 4-kinase family protein (TAIR:AT1G27570.2); Has 81 Blast hits to 81 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G43950.1p  transcript_id AT3G43950.1  protein_id AT3G43950.1p  transcript_id AT3G43950.1  
At3g43955	chr3:015768820	0.0	C/15768820-15773629	AT3G43955.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At3g43960	chr3:015775181	0.0	C/15775181-15775628,15774747-15774988,15774525-15774662,15774122-15774424	AT3G43960.1  CDS  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product cysteine proteinase, putative  note cysteine proteinase, putative; FUNCTIONS IN: cysteine-type peptidase activity, cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: cysteine proteinase, putative (TAIR:AT3G19400.1); Has 6105 Blast hits to 6024 proteins in 578 species: Archae - 21; Bacteria - 72; Metazoa - 2875; Fungi - 4; Plants - 1197; Viruses - 122; Other Eukaryotes - 1814 (source: NCBI BLink).  protein_id AT3G43960.1p  transcript_id AT3G43960.1  protein_id AT3G43960.1p  transcript_id AT3G43960.1  
At3g43970	chr3:015777734	0.0	C/15777734-15777948,15777408-15777561	AT3G43970.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G53240.1); Has 42 Blast hits to 42 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G43970.1p  transcript_id AT3G43970.1  protein_id AT3G43970.1p  transcript_id AT3G43970.1  
At3g43980	chr3:015779174	0.0	C/15779174-15779235,15778645-15778744,15778555-15778563	AT3G43980.1  CDS  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S29 (RPS29A)  note 40S ribosomal protein S29 (RPS29A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Ribosomal protein S14 (InterPro:IPR001209); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S29 (RPS29C) (TAIR:AT4G33865.1); Has 693 Blast hits to 693 proteins in 260 species: Archae - 152; Bacteria - 0; Metazoa - 228; Fungi - 88; Plants - 102; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).  protein_id AT3G43980.1p  transcript_id AT3G43980.1  protein_id AT3G43980.1p  transcript_id AT3G43980.1  
At3g43990	chr3:015784921	0.0	C/15784921-15785178,15784696-15784758,15783693-15784367,15782783-15782848,15782538-15782618	AT3G43990.1  CDS  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product bromo-adjacent homology (BAH) domain-containing protein  note bromo-adjacent homology (BAH) domain-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Bromo adjacent region (InterPro:IPR001025); BEST Arabidopsis thaliana protein match is: bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT4G23120.1); Has 263 Blast hits to 261 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 89; Fungi - 0; Plants - 161; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT3G43990.1p  transcript_id AT3G43990.1  protein_id AT3G43990.1p  transcript_id AT3G43990.1  
At3g44000	chr3:015787227	0.0	C/15787227-15788739	AT3G44000.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 1.9e-07 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At3g44005	chr3:015795417	0.0	C/15795417-15796016	AT3G44005.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At3g44006	chr3:015796238	0.0	W/15796238-15796417	AT3G44006.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G44006.1p  transcript_id AT3G44006.1  protein_id AT3G44006.1p  transcript_id AT3G44006.1  
At3g44010	chr3:015801071	0.0	C/15801071-15801132,15800264-15800363,15800175-15800183	AT3G44010.1  CDS  gene_syn T15B3.150  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S29 (RPS29B)  note 40S ribosomal protein S29 (RPS29B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein S14 (InterPro:IPR001209); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S29 (RPS29C) (TAIR:AT4G33865.1); Has 693 Blast hits to 693 proteins in 260 species: Archae - 152; Bacteria - 0; Metazoa - 228; Fungi - 88; Plants - 102; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).  protein_id AT3G44010.1p  transcript_id AT3G44010.1  protein_id AT3G44010.1p  transcript_id AT3G44010.1  
At3g44020	chr3:015801382	0.0	W/15801382-15801687,15801780-15801816,15802326-15802409,15802509-15802561	AT3G44020.1  CDS  go_component chloroplast thylakoid lumen|GO:0009543|11719511|ISS  product thylakoid lumenal P17.1 protein  note thylakoid lumenal P17.1 protein; LOCATED IN: chloroplast thylakoid lumen; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; Has 37 Blast hits to 37 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT3G44020.1p  transcript_id AT3G44020.1  protein_id AT3G44020.1p  transcript_id AT3G44020.1  
At3g44030	chr3:015803993	0.0	W/15803993-15806948	AT3G44030.1  pseudogenic_transcript  pseudo  note pseudogene, similar to OSJNBb0043H09.1, blastp match of 40% identity and 8.4e-38 P-value to GP|21740634|emb|CAD40195.1||AL606611 OSJNBb0043H09.1 {Oryza sativa (japonica cultivar-group)}  
At3g44035	chr3:015808431	0.0	W/15808431-15810650	AT3G44035.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.8e-13 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At3g44042	chr3:015813075	0.0	C/15813075-15814056	AT3G44042.1  mRNA_TE_gene  pseudo  gene_syn SADHU NON-CODING RETROTRANSPOSON, SADHU3-1  gene SADHU3-1  function Member of Sadhu non-coding retrotransposon family.In some natural accessions the allele is methylated and silenced.  note Transposable element gene  
At3g44045	chr3:015817539	0.0	W/15817539-15818150	AT3G44045.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 6.6e-08 P-value blast match to GB:CAA26446 ORF2 (Ty1_Copia-element) (Drosophila melanogaster)  
At3g44050	chr3:015818738	0.0	W/15818738-15819022,15819276-15819431,15819512-15819595,15819679-15819798,15819881-15819994,15820078-15820170,15820537-15820626,15820749-15820819,15820894-15820968,15821054-15821141,15821242-15821300,15821396-15821459,15821551-15821616,15821693-15821845,15821975-15822079,15822175-15822327,15822509-15822559,15822644-15822739,15822858-15822917,15823004-15823083,15823166-15824792	AT3G44050.1  CDS  gene_syn F26G5.1  go_component microtubule associated complex|GO:0005875||IEA  go_component chloroplast|GO:0009507||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product kinesin motor protein-related  note kinesin motor protein-related; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: POK2 (PHRAGMOPLAST ORIENTING KINESIN 2); ATP binding / microtubule motor (TAIR:AT3G19050.1); Has 95118 Blast hits to 52160 proteins in 1788 species: Archae - 1018; Bacteria - 10182; Metazoa - 45566; Fungi - 6723; Plants - 3836; Viruses - 331; Other Eukaryotes - 27462 (source: NCBI BLink).  protein_id AT3G44050.1p  transcript_id AT3G44050.1  protein_id AT3G44050.1p  transcript_id AT3G44050.1  
At3g44060	chr3:015825525	0.0	C/15825525-15826391,15825296-15825439,15824938-15825210	AT3G44060.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G44090.1); Has 1204 Blast hits to 1170 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1204; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44060.1p  transcript_id AT3G44060.1  protein_id AT3G44060.1p  transcript_id AT3G44060.1  
At3g44070	chr3:015828760	0.0	C/15828760-15829088,15828177-15828678	AT3G44070.1  CDS  go_component beta-galactosidase complex|GO:0009341||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  product beta-galactosidase  note beta-galactosidase; FUNCTIONS IN: beta-galactosidase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: beta-galactosidase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944); BEST Arabidopsis thaliana protein match is: beta-galactosidase (TAIR:AT5G26622.1); Has 22 Blast hits to 22 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44070.1p  transcript_id AT3G44070.1  protein_id AT3G44070.1p  transcript_id AT3G44070.1  
At3g44080	chr3:015836595	0.0	C/15836595-15837126,15836211-15836422,15835998-15836138,15835632-15835910	AT3G44080.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G44090.1); Has 936 Blast hits to 829 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 935; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44080.1p  transcript_id AT3G44080.1  protein_id AT3G44080.1p  transcript_id AT3G44080.1  
At3g44090	chr3:015839123	0.0	W/15839123-15840067,15840171-15840257,15840345-15840596,15840694-15840759	AT3G44090.1  CDS  go_component cellular_component|GO:0005575||ND  product F-box family protein  note F-box family protein; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G44060.1); Has 983 Blast hits to 954 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 983; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44090.1p  transcript_id AT3G44090.1  protein_id AT3G44090.1p  transcript_id AT3G44090.1  
At3g44091	chr3:015843163	0.0	W/15843163-15843282	AT3G44091.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G44091.1p  transcript_id AT3G44091.1  protein_id AT3G44091.1p  transcript_id AT3G44091.1  
At3g44093	chr3:015849043	0.0	C/15849043-15853462	AT3G44093.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 3.4e-162 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus)  
At3g44096	chr3:015859368	0.0	C/15859368-15863166	AT3G44096.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 4.8e-23 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)  
At3g44100	chr3:015867183	0.0	C/15867183-15867273,15866627-15866725,15866356-15866516,15866162-15866269	AT3G44100.1  CDS  go_component cell wall|GO:0005618|15593128|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MD-2-related lipid recognition domain-containing protein / ML domain-containing protein  note MD-2-related lipid recognition domain-containing protein / ML domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, vacuole, anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: MD-2-related lipid-recognition (InterPro:IPR003172); BEST Arabidopsis thaliana protein match is: MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (TAIR:AT3G11780.1); Has 181 Blast hits to 181 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 83; Plants - 77; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT3G44100.1p  transcript_id AT3G44100.1  protein_id AT3G44100.1p  transcript_id AT3G44100.1  
At3g44110	chr3:015870907	0.0	C/15870907-15871059,15870480-15870645,15870261-15870399,15869834-15870110,15869537-15869735,15869115-15869443	AT3G44110.1  CDS  gene_syn ATJ, ATJ3  gene ATJ3  function homologous to the co-chaperon DNAJ protein from E coli  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein folding|GO:0006457||ISS  go_function protein binding|GO:0005515||ISS  product ATJ3; protein binding  note ATJ3; FUNCTIONS IN: protein binding; INVOLVED IN: protein folding; LOCATED IN: nucleolus, cell wall, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), Heat shock protein DnaJ, cysteine-rich region (InterPro:IPR001305); BEST Arabidopsis thaliana protein match is: ATJ2; protein binding (TAIR:AT5G22060.1); Has 19050 Blast hits to 18840 proteins in 2093 species: Archae - 130; Bacteria - 5696; Metazoa - 3572; Fungi - 1595; Plants - 1303; Viruses - 63; Other Eukaryotes - 6691 (source: NCBI BLink).  protein_id AT3G44110.1p  transcript_id AT3G44110.1  protein_id AT3G44110.1p  transcript_id AT3G44110.1  
At3g44110	chr3:015870907	0.0	C/15870907-15871059,15870480-15870645,15870261-15870399,15869834-15870110,15869537-15869735,15869384-15869443,15869179-15869216	AT3G44110.2  CDS  gene_syn ATJ, ATJ3  gene ATJ3  function homologous to the co-chaperon DNAJ protein from E coli  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein folding|GO:0006457||ISS  go_function protein binding|GO:0005515||ISS  product ATJ3; protein binding  note ATJ3; FUNCTIONS IN: protein binding; INVOLVED IN: protein folding; LOCATED IN: nucleolus, cell wall, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), Heat shock protein DnaJ, cysteine-rich region (InterPro:IPR001305), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: ATJ2; protein binding (TAIR:AT5G22060.1); Has 18744 Blast hits to 18617 proteins in 2093 species: Archae - 130; Bacteria - 5631; Metazoa - 3563; Fungi - 1595; Plants - 1299; Viruses - 63; Other Eukaryotes - 6463 (source: NCBI BLink).  protein_id AT3G44110.2p  transcript_id AT3G44110.2  protein_id AT3G44110.2p  transcript_id AT3G44110.2  
At3g44115	chr3:015874991	0.0	W/15874991-15875338	AT3G44115.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G57760.1); Has 39 Blast hits to 39 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44115.1p  transcript_id AT3G44115.1  protein_id AT3G44115.1p  transcript_id AT3G44115.1  
At3g44117	chr3:015876726	0.0	W/15876726-15877074	AT3G44117.1  pseudogenic_transcript  pseudo  function Encodes a ECA1 gametogenesis related family protein [pseudogene]  
At3g44120	chr3:015878609	0.0	C/15878609-15879763	AT3G44120.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G07140.2); Has 739 Blast hits to 719 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 739; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44120.1p  transcript_id AT3G44120.1  protein_id AT3G44120.1p  transcript_id AT3G44120.1  
At3g44130	chr3:015881870	0.0	W/15881870-15882665,15883390-15883502,15883606-15883638	AT3G44130.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G18340.1); Has 527 Blast hits to 520 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 527; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44130.1p  transcript_id AT3G44130.1  protein_id AT3G44130.1p  transcript_id AT3G44130.1  
At3g44140	chr3:015885357	0.0	C/15885357-15885380,15885077-15885268	AT3G44140.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44140.1p  transcript_id AT3G44140.1  protein_id AT3G44140.1p  transcript_id AT3G44140.1  
At3g44150	chr3:015887617	0.0	W/15887617-15887937,15888227-15888334,15888417-15888728	AT3G44150.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11800.1); Has 46 Blast hits to 44 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G44150.1p  transcript_id AT3G44150.1  protein_id AT3G44150.1p  transcript_id AT3G44150.1  
At3g44160	chr3:015891781	0.0	C/15891781-15891814,15891126-15891192,15890974-15891009,15890706-15890850,15890449-15890607,15890281-15890351,15890113-15890191,15889888-15890003,15889638-15889785,15889474-15889543,15889225-15889388	AT3G44160.1  CDS  go_component outer membrane|GO:0019867||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function molecular_function|GO:0003674||ND  product chloroplast outer membrane protein-related  note chloroplast outer membrane protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: outer membrane; CONTAINS InterPro DOMAIN/s: Bacterial surface antigen (D15) (InterPro:IPR000184); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48620.1); Has 532 Blast hits to 532 proteins in 164 species: Archae - 0; Bacteria - 318; Metazoa - 2; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).  protein_id AT3G44160.1p  transcript_id AT3G44160.1  protein_id AT3G44160.1p  transcript_id AT3G44160.1  
At3g44170	chr3:015894790	0.0	W/15894790-15895257	AT3G44170.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26090.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44170.1p  transcript_id AT3G44170.1  protein_id AT3G44170.1p  transcript_id AT3G44170.1  
At3g44171	chr3:015896201	0.0	C/15896201-15896356	AT3G44171.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G44171.1p  transcript_id AT3G44171.1  protein_id AT3G44171.1p  transcript_id AT3G44171.1  
At3g44175	chr3:015898567	0.0	W/15898567-15900327	AT3G44175.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to putative reverse transcriptase, similar to reverse transcriptase, putative; blastp match of 28% identity and 4.2e-46 P-value to GP|20279456|gb|AAM18736.1|AC092548_14|AC092548 putative reverse transcriptase {Oryza sativa (japonica cultivar-group)}  
At3g44180	chr3:015900795	0.0	W/15900795-15901136,15901213-15901356,15901594-15901716	AT3G44180.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product syntaxin-related family protein  note syntaxin-related family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G44060.1); Has 301 Blast hits to 288 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 301; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44180.1p  transcript_id AT3G44180.1  protein_id AT3G44180.1p  transcript_id AT3G44180.1  
At3g44190	chr3:015903281	0.0	C/15903281-15903402,15902886-15903142,15902356-15902807,15902004-15902276	AT3G44190.1  CDS  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function electron carrier activity|GO:0009055||ISS  product pyridine nucleotide-disulphide oxidoreductase family protein  note pyridine nucleotide-disulphide oxidoreductase family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: pyridine nucleotide-disulphide oxidoreductase family protein (TAIR:AT5G22140.1); Has 7985 Blast hits to 7982 proteins in 1377 species: Archae - 232; Bacteria - 5932; Metazoa - 151; Fungi - 459; Plants - 140; Viruses - 0; Other Eukaryotes - 1071 (source: NCBI BLink).  protein_id AT3G44190.1p  transcript_id AT3G44190.1  protein_id AT3G44190.1p  transcript_id AT3G44190.1  
At3g44200	chr3:015906788	0.0	W/15906788-15906885,15906970-15907036,15907101-15907166,15907253-15907299,15907425-15907470,15907557-15907637,15907724-15907766,15907857-15907906,15908291-15908372,15908448-15908497,15908716-15908789,15909023-15909074,15909172-15909816,15909896-15911365	AT3G44200.1  CDS  gene_syn NIMA (NEVER IN MITOSIS, GENE A)-RELATED 6, ATNEK6, IBO1, NEK6, NIMA-RELATED KINASE6  gene NEK6  function Encodes AtNek5, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes.Interacts physically with plant kinesins ARK1 and ARK2. Mutants show defects in root epidermal cell morphology, trichome branching and other epidermal cell abnormalities suggesting a rol e in epidermal cell differentiation. NEK6 co-localizes with cortical microtubules.  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cortical microtubule|GO:0055028|18266916|IDA  go_process microtubule-based process|GO:0007017|17971038|IMP  go_process epidermal cell differentiation|GO:0009913|17971038|IMP  go_function kinase activity|GO:0016301||ISS  product NEK6 (NIMA (NEVER IN MITOSIS, GENE A)-RELATED 6); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note NIMA (NEVER IN MITOSIS, GENE A)-RELATED 6 (NEK6); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: microtubule-based process, epidermal cell differentiation; LOCATED IN: cortical microtubule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATNEK1 (ARABIDOPSIS THALIANA NIMA-RELATED SERINE/THREONINE KINASE 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT1G54510.1); Has 93100 Blast hits to 90716 proteins in 3043 species: Archae - 52; Bacteria - 8252; Metazoa - 40664; Fungi - 8454; Plants - 17542; Viruses - 472; Other Eukaryotes - 17664 (source: NCBI BLink).  protein_id AT3G44200.1p  transcript_id AT3G44200.1  protein_id AT3G44200.1p  transcript_id AT3G44200.1  
At3g44205	chr3:015913021	0.0	C/15913021-15915321	AT3G44205.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 1.5e-40 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At3g44210	chr3:015916270	0.0	W/15916270-15916346,15916442-15916520,15916676-15916766,15917023-15917162,15917288-15917332	AT3G44210.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43870.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44210.1p  transcript_id AT3G44210.1  protein_id AT3G44210.1p  transcript_id AT3G44210.1  
At3g44212	chr3:015917928	0.0	C/15917928-15918131	AT3G44212.1  pseudogenic_transcript  pseudo  function Encodes a Maternally expressed gene (MEG) family protein [pseudogene]  
At3g44215	chr3:015919239	0.0	C/15919239-15923690	AT3G44215.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.8e-150 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At3g44220	chr3:015928216	0.0	W/15928216-15928518,15929328-15929645	AT3G44220.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product harpin-induced family protein / HIN1 family protein / harpin-responsive family protein  note harpin-induced family protein / HIN1 family protein / harpin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: harpin-induced family protein / HIN1 family protein / harpin-responsive family protein (TAIR:AT5G22200.1); Has 559 Blast hits to 559 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 559; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44220.1p  transcript_id AT3G44220.1  protein_id AT3G44220.1p  transcript_id AT3G44220.1  
At3g44230	chr3:015932134	0.0	W/15932134-15932748	AT3G44230.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22160.1); Has 9 Blast hits to 9 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44230.1p  transcript_id AT3G44230.1  protein_id AT3G44230.1p  transcript_id AT3G44230.1  
At3g44235	chr3:015933284	0.0	W/15933284-15933635,15933716-15933963	AT3G44235.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22150.1); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44235.1p  transcript_id AT3G44235.1  protein_id AT3G44235.1p  transcript_id AT3G44235.1  
At3g44240	chr3:015940184	0.0	W/15940184-15940903	AT3G44240.1  CDS  go_component nucleus|GO:0005634||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process RNA modification|GO:0009451||ISS  go_function ribonuclease activity|GO:0004540||ISS  product CCR4-NOT transcription complex protein, putative  note CCR4-NOT transcription complex protein, putative; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: CCR4-NOT transcription complex protein, putative (TAIR:AT1G61470.1); Has 607 Blast hits to 607 proteins in 154 species: Archae - 0; Bacteria - 0; Metazoa - 215; Fungi - 93; Plants - 203; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT3G44240.1p  transcript_id AT3G44240.1  protein_id AT3G44240.1p  transcript_id AT3G44240.1  
At3g44245	chr3:015942984	0.0	C/15942984-15944564	AT3G44245.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At3g44250	chr3:015949627	0.0	C/15949627-15950224,15949254-15949540,15948505-15949119	AT3G44250.1  CDS  gene_syn CYP71B38  gene CYP71B38  function putative cytochrome P450  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71B38; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71B38; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, sepal, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973); BEST Arabidopsis thaliana protein match is: CYP71B5 (CYTOCHROME P450 71B5); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G53280.1); Has 23344 Blast hits to 23176 proteins in 1242 species: Archae - 23; Bacteria - 1801; Metazoa - 10466; Fungi - 4366; Plants - 5882; Viruses - 3; Other Eukaryotes - 803 (source: NCBI BLink).  protein_id AT3G44250.1p  transcript_id AT3G44250.1  protein_id AT3G44250.1p  transcript_id AT3G44250.1  
At3g44260	chr3:015952213	0.0	C/15952213-15953055	AT3G44260.1  CDS  go_component nucleus|GO:0005634||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process RNA modification|GO:0009451||ISS  go_process response to biotic stimulus|GO:0009607|17953483|IEP  go_process response to wounding|GO:0009611|17953483|IEP  go_function ribonuclease activity|GO:0004540||ISS  product CCR4-NOT transcription complex protein, putative  note CCR4-NOT transcription complex protein, putative; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: response to biotic stimulus, response to wounding, RNA modification; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: CCR4-NOT transcription complex protein, putative (TAIR:AT5G22250.1); Has 627 Blast hits to 625 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 94; Plants - 213; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT3G44260.1p  transcript_id AT3G44260.1  protein_id AT3G44260.1p  transcript_id AT3G44260.1  
At3g44261	chr3:015954539	0.0	C/15954539-15954667	AT3G44261.1  CDS  product unknown protein  note unknown protein; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44261.1p  transcript_id AT3G44261.1  protein_id AT3G44261.1p  transcript_id AT3G44261.1  
At3g44262	chr3:015956886	0.0	C/15956886-15957093	AT3G44262.1  pseudogenic_transcript  pseudo  note pseudogene, similar to putative subtilase, blastp match of 44% identity and 1.5e-11 P-value to GP|20160947|dbj|BAB89882.1||AP003299 putative subtilase {Oryza sativa (japonica cultivar-group)}  
At3g44264	chr3:015958387	0.0	C/15958387-15959820	AT3G44264.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.7e-99 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element)  
At3g44267	chr3:015960323	0.0	W/15960323-15961773	AT3G44267.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 5.1e-114 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At3g44270	chr3:015962693	0.0	W/15962693-15963828	AT3G44270.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.1e-26 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At3g44274	chr3:015965748	0.0	C/15965748-15966251	AT3G44274.1  pseudogenic_transcript  pseudo  function unknown pseudogene  
At3g44280	chr3:015970377	0.0	C/15970377-15970532,15968760-15968930	AT3G44280.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22280.1); Has 47 Blast hits to 47 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44280.1p  transcript_id AT3G44280.1  protein_id AT3G44280.1p  transcript_id AT3G44280.1  
At3g44290	chr3:015974839	0.0	C/15974839-15975019,15973759-15974012,15973385-15973618,15972909-15973247	AT3G44290.1  CDS  gene_syn Arabidopsis NAC domain containing protein 60, anac060  gene anac060  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac060 (Arabidopsis NAC domain containing protein 60); transcription factor  note Arabidopsis NAC domain containing protein 60 (anac060); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac089 (Arabidopsis NAC domain containing protein 89); transcription factor (TAIR:AT5G22290.1); Has 1486 Blast hits to 1483 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1486; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44290.1p  transcript_id AT3G44290.1  protein_id AT3G44290.1p  transcript_id AT3G44290.1  
At3g44300	chr3:015983351	0.0	W/15983351-15983459,15983531-15983710,15984258-15984551,15984644-15984925,15985018-15985172	AT3G44300.1  CDS  gene_syn NIT2, NITRILASE 2, NITRILE AMINOHYDROLASE, nitrilase 2  gene NIT2  function Encodes an enzyme that catalyzes the hydrolysis of indole-3-acetonitrile (IAN) to indole-3-acetic acid (IAA) (nitrile aminohydrolase, EC 3.5.5.1) and IAN to indole-3-acetamide (IAM) at lower levels. Mutants have reduced sensitivity to IAN and are sensitive to IAA. This enzyme likely participates in other non-auxin-related metabolic pathways.  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cellular_component|GO:0005575||ND  go_process response to bacterium|GO:0009617||IEP  go_process indoleacetic acid biosynthetic process|GO:0009684|9763705|TAS  go_function nitrilase activity|GO:0000257|11525507|IDA  go_function indole-3-acetonitrile nitrilase activity|GO:0080061|8022831|IDA  go_function indole-3-acetonitrile nitrile hydratase activity|GO:0080109|12430025|IDA  product NIT2 (nitrilase 2); indole-3-acetonitrile nitrilase/ indole-3-acetonitrile nitrile hydratase/ nitrilase  note nitrilase 2 (NIT2); FUNCTIONS IN: indole-3-acetonitrile nitrilase activity, indole-3-acetonitrile nitrile hydratase activity, nitrilase activity; INVOLVED IN: response to cadmium ion, response to bacterium, indoleacetic acid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon, cultured cell; CONTAINS InterPro DOMAIN/s: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (InterPro:IPR003010), Nitrilase/cyanide hydratase, conserved site (InterPro:IPR000132); BEST Arabidopsis thaliana protein match is: NIT1; indole-3-acetonitrile nitrilase/ indole-3-acetonitrile nitrile hydratase/ nitrilase (TAIR:AT3G44310.3); Has 5100 Blast hits to 5051 proteins in 1006 species: Archae - 99; Bacteria - 2884; Metazoa - 349; Fungi - 369; Plants - 200; Viruses - 11; Other Eukaryotes - 1188 (source: NCBI BLink).  protein_id AT3G44300.1p  transcript_id AT3G44300.1  protein_id AT3G44300.1p  transcript_id AT3G44300.1  
At3g44310	chr3:015986901	0.0	W/15986901-15987030,15987123-15987302,15987932-15988225,15988319-15988600,15988687-15988841	AT3G44310.1  CDS  gene_syn ATNIT1, NIT1, NITI, NITRILASE 1, NITRILE AMINOHYDROLASE  gene NIT1  function Mutants are resistant to indole-3-acetonitrile (IAN). NIT1 catalyzes the terminal activation step in indole-acetic acid biosynthesis. Predominantly expressed isoform of nitrilase isoenzyme family. Aggregation of NIT1 in cells directly abutting wound sites is one of the earliest events associated with wound and herbicide-induced cell death. The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide. It is also involved in the conversion of IAN to IAM (indole-3-acetamide) and other non-auxin-related metabolic processes.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process indoleacetic acid biosynthetic process|GO:0009684|9763705|TAS  go_function nitrilase activity|GO:0000257|11525507|IDA  go_function indole-3-acetonitrile nitrilase activity|GO:0080061|8022831|IDA  go_function indole-3-acetonitrile nitrile hydratase activity|GO:0080109|12430025|IDA  product NIT1; indole-3-acetonitrile nitrilase/ indole-3-acetonitrile nitrile hydratase/ nitrilase  note NIT1; FUNCTIONS IN: indole-3-acetonitrile nitrilase activity, indole-3-acetonitrile nitrile hydratase activity, nitrilase activity; INVOLVED IN: indoleacetic acid biosynthetic process; LOCATED IN: apoplast, chloroplast, plasma membrane; EXPRESSED IN: guard cell, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (InterPro:IPR003010), Nitrilase/cyanide hydratase, conserved site (InterPro:IPR000132); BEST Arabidopsis thaliana protein match is: NIT2 (nitrilase 2); indole-3-acetonitrile nitrilase/ indole-3-acetonitrile nitrile hydratase/ nitrilase (TAIR:AT3G44300.1); Has 4979 Blast hits to 4931 proteins in 987 species: Archae - 85; Bacteria - 2796; Metazoa - 347; Fungi - 370; Plants - 196; Viruses - 11; Other Eukaryotes - 1174 (source: NCBI BLink).  protein_id AT3G44310.1p  transcript_id AT3G44310.1  protein_id AT3G44310.1p  transcript_id AT3G44310.1  
At3g44310	chr3:015986901	0.0	W/15986901-15987030,15987123-15987302,15987932-15988225,15988319-15988600,15988687-15988841	AT3G44310.3  CDS  gene_syn ATNIT1, NIT1, NITI, NITRILASE 1, NITRILE AMINOHYDROLASE  gene NIT1  function Mutants are resistant to indole-3-acetonitrile (IAN). NIT1 catalyzes the terminal activation step in indole-acetic acid biosynthesis. Predominantly expressed isoform of nitrilase isoenzyme family. Aggregation of NIT1 in cells directly abutting wound sites is one of the earliest events associated with wound and herbicide-induced cell death. The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide. It is also involved in the conversion of IAN to IAM (indole-3-acetamide) and other non-auxin-related metabolic processes.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process indoleacetic acid biosynthetic process|GO:0009684|9763705|TAS  go_function nitrilase activity|GO:0000257|11525507|IDA  go_function indole-3-acetonitrile nitrilase activity|GO:0080061|8022831|IDA  go_function indole-3-acetonitrile nitrile hydratase activity|GO:0080109|12430025|IDA  product NIT1; indole-3-acetonitrile nitrilase/ indole-3-acetonitrile nitrile hydratase/ nitrilase  note NIT1; FUNCTIONS IN: indole-3-acetonitrile nitrilase activity, indole-3-acetonitrile nitrile hydratase activity, nitrilase activity; INVOLVED IN: indoleacetic acid biosynthetic process; LOCATED IN: apoplast, chloroplast, plasma membrane; EXPRESSED IN: guard cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (InterPro:IPR003010), Nitrilase/cyanide hydratase, conserved site (InterPro:IPR000132); BEST Arabidopsis thaliana protein match is: NIT2 (nitrilase 2); indole-3-acetonitrile nitrilase/ indole-3-acetonitrile nitrile hydratase/ nitrilase (TAIR:AT3G44300.1); Has 4979 Blast hits to 4931 proteins in 987 species: Archae - 85; Bacteria - 2796; Metazoa - 347; Fungi - 370; Plants - 196; Viruses - 11; Other Eukaryotes - 1174 (source: NCBI BLink).  protein_id AT3G44310.3p  transcript_id AT3G44310.3  protein_id AT3G44310.3p  transcript_id AT3G44310.3  
At3g44310	chr3:015987988	0.0	W/15987988-15988225,15988319-15988600,15988687-15988841	AT3G44310.2  CDS  gene_syn ATNIT1, NIT1, NITI, NITRILASE 1, NITRILE AMINOHYDROLASE  gene NIT1  function Mutants are resistant to indole-3-acetonitrile (IAN). NIT1 catalyzes the terminal activation step in indole-acetic acid biosynthesis. Predominantly expressed isoform of nitrilase isoenzyme family. Aggregation of NIT1 in cells directly abutting wound sites is one of the earliest events associated with wound and herbicide-induced cell death. The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide. It is also involved in the conversion of IAN to IAM (indole-3-acetamide) and other non-auxin-related metabolic processes.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process indoleacetic acid biosynthetic process|GO:0009684|9763705|TAS  go_function nitrilase activity|GO:0000257|11525507|IDA  go_function indole-3-acetonitrile nitrilase activity|GO:0080061|8022831|IDA  go_function indole-3-acetonitrile nitrile hydratase activity|GO:0080109|12430025|IDA  product NIT1; indole-3-acetonitrile nitrilase/ indole-3-acetonitrile nitrile hydratase/ nitrilase  note NIT1; FUNCTIONS IN: indole-3-acetonitrile nitrilase activity, indole-3-acetonitrile nitrile hydratase activity, nitrilase activity; INVOLVED IN: indoleacetic acid biosynthetic process; LOCATED IN: apoplast, chloroplast, plasma membrane; EXPRESSED IN: guard cell, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (InterPro:IPR003010), Nitrilase/cyanide hydratase, conserved site (InterPro:IPR000132); BEST Arabidopsis thaliana protein match is: NIT2 (nitrilase 2); indole-3-acetonitrile nitrilase/ indole-3-acetonitrile nitrile hydratase/ nitrilase (TAIR:AT3G44300.1); Has 3163 Blast hits to 3143 proteins in 752 species: Archae - 25; Bacteria - 1705; Metazoa - 245; Fungi - 276; Plants - 171; Viruses - 0; Other Eukaryotes - 741 (source: NCBI BLink).  protein_id AT3G44310.2p  transcript_id AT3G44310.2  protein_id AT3G44310.2p  transcript_id AT3G44310.2  
At3g44320	chr3:015993419	0.0	W/15993419-15993548,15993644-15993823,15994576-15994869,15994953-15995234,15995339-15995493	AT3G44320.1  CDS  gene_syn NIT3, NITRILASE 3  gene NIT3  function This enzyme catalyzes the hydrolysis of indole-3-acetonitrile (IAN) to indole-3-acetic acid (IAA) (EC 3.5.5.1) and IAN to indole-3-acetamide (IAM) at lower levels. It is the only one of the four Arabidopsis nitrilases whose mRNA levels are strongly induced when plants experience sulphur deprivation. This enzyme likely participates in other non-auxin-related metabolic pathways.  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cellular_component|GO:0005575||ND  go_process cellular response to sulfate starvation|GO:0009970|11967096|IEP  go_process glucosinolate catabolic process|GO:0019762|11525507|TAS  go_function nitrilase activity|GO:0000257|11525507|IDA  go_function indole-3-acetonitrile nitrilase activity|GO:0080061|8022831|IDA  go_function indole-3-acetonitrile nitrile hydratase activity|GO:0080109|12430025|IDA  product NIT3 (NITRILASE 3); indole-3-acetonitrile nitrilase/ indole-3-acetonitrile nitrile hydratase/ nitrilase  note NITRILASE 3 (NIT3); FUNCTIONS IN: indole-3-acetonitrile nitrilase activity, indole-3-acetonitrile nitrile hydratase activity, nitrilase activity; INVOLVED IN: cellular response to sulfate starvation, response to cadmium ion, glucosinolate catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (InterPro:IPR003010), Nitrilase/cyanide hydratase, conserved site (InterPro:IPR000132); BEST Arabidopsis thaliana protein match is: NIT1; indole-3-acetonitrile nitrilase/ indole-3-acetonitrile nitrile hydratase/ nitrilase (TAIR:AT3G44310.3); Has 4814 Blast hits to 4765 proteins in 969 species: Archae - 92; Bacteria - 2789; Metazoa - 339; Fungi - 369; Plants - 202; Viruses - 11; Other Eukaryotes - 1012 (source: NCBI BLink).  protein_id AT3G44320.1p  transcript_id AT3G44320.1  protein_id AT3G44320.1p  transcript_id AT3G44320.1  
At3g44325	chr3:015996572	0.0	C/15996572-15999922	AT3G44325.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 3.4e-28 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea)  
At3g44326	chr3:016000933	0.0	C/16000933-16002024	AT3G44326.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G27310.1); Has 56 Blast hits to 56 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44326.1p  transcript_id AT3G44326.1  protein_id AT3G44326.1p  transcript_id AT3G44326.1  
At3g44330	chr3:016006754	0.0	W/16006754-16007045,16007122-16007282,16007377-16007480,16007775-16007841,16008342-16008434,16008505-16008669,16008781-16008921,16009000-16009077,16009490-16009602,16009718-16009778,16009930-16010097,16010211-16010312,16010429-16010518,16010609-16010671	AT3G44330.1  CDS  go_component mitochondrion|GO:0005739|15276431|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein processing|GO:0016485||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  product unknown protein  note INVOLVED IN: protein processing; LOCATED IN: mitochondrion, endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nicalin (InterPro:IPR016574), EF-HAND 1 (InterPro:IPR018247), Nicastrin (InterPro:IPR008710); Has 192 Blast hits to 192 proteins in 79 species: Archae - 6; Bacteria - 5; Metazoa - 124; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT3G44330.1p  transcript_id AT3G44330.1  protein_id AT3G44330.1p  transcript_id AT3G44330.1  
At3g44340	chr3:016018965	0.0	C/16018965-16019873,16018485-16018664,16018307-16018381,16018108-16018206,16017765-16017876,16017361-16017488,16016870-16016989,16016620-16016700,16016252-16016329,16016060-16016152,16015744-16015798,16015484-16015560,16015218-16015289,16014999-16015082,16014536-16014655,16014381-16014449,16014048-16014125,16013777-16013915,16013500-16013664,16012970-16013115,16012702-16012881,16012244-16012332,16012084-16012144	AT3G44340.2  CDS  gene_syn CEF, clone eighty-four  gene CEF  function homologous to yeast and animal Sec24 proteins; expression in yeast cells enhances their survival under oxidative stress conditions.  go_component chloroplast|GO:0009507||IEA  go_component COPII vesicle coat|GO:0030127||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process response to oxidative stress|GO:0006979||IEP  go_process vesicle-mediated transport|GO:0016192||ISS  go_function transporter activity|GO:0005215||ISS  product CEF (clone eighty-four); protein binding / transporter/ zinc ion binding  note clone eighty-four (CEF); FUNCTIONS IN: protein binding, transporter activity, zinc ion binding; INVOLVED IN: response to oxidative stress, vesicle-mediated transport; LOCATED IN: COPII vesicle coat, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24 helical region (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24 trunk region (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin region (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G32640.2); Has 108020 Blast hits to 48877 proteins in 1450 species: Archae - 52; Bacteria - 12698; Metazoa - 58027; Fungi - 14362; Plants - 8878; Viruses - 2054; Other Eukaryotes - 11949 (source: NCBI BLink).  protein_id AT3G44340.2p  transcript_id AT3G44340.2  protein_id AT3G44340.2p  transcript_id AT3G44340.2  
At3g44340	chr3:016018965	0.0	C/16018965-16019873,16018485-16018664,16018307-16018381,16018108-16018206,16017765-16017876,16017361-16017488,16016870-16016989,16016620-16016700,16016252-16016329,16016060-16016152,16015744-16015798,16015484-16015560,16015218-16015289,16014999-16015082,16014536-16014655,16014381-16014449,16014048-16014125,16013777-16013915,16013500-16013664,16012970-16013115,16012702-16012881,16012244-16012332,16012113-16012144,16011923-16012032	AT3G44340.1  CDS  gene_syn CEF, clone eighty-four  gene CEF  function homologous to yeast and animal Sec24 proteins; expression in yeast cells enhances their survival under oxidative stress conditions.  go_component chloroplast|GO:0009507||IEA  go_component COPII vesicle coat|GO:0030127||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process response to oxidative stress|GO:0006979||IEP  go_process vesicle-mediated transport|GO:0016192||ISS  go_function transporter activity|GO:0005215||ISS  product CEF (clone eighty-four); protein binding / transporter/ zinc ion binding  note clone eighty-four (CEF); FUNCTIONS IN: protein binding, transporter activity, zinc ion binding; INVOLVED IN: response to oxidative stress, vesicle-mediated transport; LOCATED IN: COPII vesicle coat, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24 helical region (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24 trunk region (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin region (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G32640.2); Has 106980 Blast hits to 48671 proteins in 1445 species: Archae - 52; Bacteria - 12523; Metazoa - 57382; Fungi - 14299; Plants - 8759; Viruses - 2036; Other Eukaryotes - 11929 (source: NCBI BLink).  protein_id AT3G44340.1p  transcript_id AT3G44340.1  protein_id AT3G44340.1p  transcript_id AT3G44340.1  
At3g44350	chr3:016024331	0.0	C/16024331-16024487,16023693-16023976,16022836-16023081	AT3G44350.1  CDS  gene_syn Arabidopsis NAC domain containing protein 61, anac061  gene anac061  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_process response to chitin|GO:0010200|17722694|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac061 (Arabidopsis NAC domain containing protein 61); transcription factor  note Arabidopsis NAC domain containing protein 61 (anac061); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, response to chitin, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, leaf whorl, stamen, leaf; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac090 (Arabidopsis NAC domain containing protein 90); transcription factor (TAIR:AT5G22380.1); Has 1450 Blast hits to 1448 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1450; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44350.1p  transcript_id AT3G44350.1  protein_id AT3G44350.1p  transcript_id AT3G44350.1  
At3g44350	chr3:016024331	0.0	C/16024331-16024487,16023693-16023976,16022836-16023120	AT3G44350.2  CDS  gene_syn Arabidopsis NAC domain containing protein 61, anac061  gene anac061  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_process response to chitin|GO:0010200|17722694|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac061 (Arabidopsis NAC domain containing protein 61); transcription factor  note Arabidopsis NAC domain containing protein 61 (anac061); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, response to chitin, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, leaf whorl, stamen, leaf; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac090 (Arabidopsis NAC domain containing protein 90); transcription factor (TAIR:AT5G22380.1); Has 1448 Blast hits to 1446 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1448; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44350.2p  transcript_id AT3G44350.2  protein_id AT3G44350.2p  transcript_id AT3G44350.2  
At3g44370	chr3:016034735	0.0	C/16034735-16035147,16034440-16034546,16034199-16034326,16033590-16033661,16033320-16033421,16033114-16033170,16032838-16032903,16032292-16032339,16031532-16031711,16031389-16031444,16031170-16031287,16030991-16031077,16030790-16030899,16030515-16030671	AT3G44370.1  CDS  go_component mitochondrion|GO:0005739|15276431|IDA  go_process protein insertion into membrane|GO:0051205||IEA  go_function binding|GO:0005488||IEA  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: protein insertion into membrane; LOCATED IN: mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), 60 kDa inner membrane insertion protein (InterPro:IPR001708), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: OXA1 family protein (TAIR:AT1G65080.1); Has 855 Blast hits to 855 proteins in 302 species: Archae - 6; Bacteria - 403; Metazoa - 148; Fungi - 83; Plants - 52; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).  protein_id AT3G44370.1p  transcript_id AT3G44370.1  protein_id AT3G44370.1p  transcript_id AT3G44370.1  
At3g44380	chr3:016036254	0.0	C/16036254-16036814	AT3G44380.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Water Stress and Hypersensitive response (InterPro:IPR013990), Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52330.1); Has 88 Blast hits to 87 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44380.1p  transcript_id AT3G44380.1  protein_id AT3G44380.1p  transcript_id AT3G44380.1  
At3g44390	chr3:016039319	0.0	C/16039319-16039600	AT3G44390.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 4.1e-12 P-value blast match to GB:AAC24836 pol polyprotein (Ty1_Copia-element) (Candida albicans)  
At3g44400	chr3:016049094	0.0	C/16049094-16049668,16047884-16048964,16047462-16047806,16046331-16047353	AT3G44400.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane, endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: RPP1 (recognition of peronospora parasitica 1); LRR domain binding (TAIR:AT3G44480.1); Has 18687 Blast hits to 12724 proteins in 503 species: Archae - 22; Bacteria - 1525; Metazoa - 1607; Fungi - 128; Plants - 14158; Viruses - 6; Other Eukaryotes - 1241 (source: NCBI BLink).  protein_id AT3G44400.1p  transcript_id AT3G44400.1  protein_id AT3G44400.1p  transcript_id AT3G44400.1  
At3g44400	chr3:016049094	0.0	C/16049094-16049668,16047884-16048964,16047462-16047806,16046331-16047353	AT3G44400.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane, endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: RPP1 (recognition of peronospora parasitica 1); LRR domain binding (TAIR:AT3G44480.1); Has 18687 Blast hits to 12724 proteins in 503 species: Archae - 22; Bacteria - 1525; Metazoa - 1607; Fungi - 128; Plants - 14158; Viruses - 6; Other Eukaryotes - 1241 (source: NCBI BLink).  protein_id AT3G44400.2p  transcript_id AT3G44400.2  protein_id AT3G44400.2p  transcript_id AT3G44400.2  
At3g44410	chr3:016055051	0.0	C/16055051-16055770	AT3G44410.1  pseudogenic_transcript  pseudo  note pseudogene, disease resistence protein, putative, similar to disease resistance protein RPP1-WsB (Arabidopsis thaliana) gi|3860165|gb|AAC72978  
At3g44420	chr3:016056297	0.0	W/16056297-16056844	AT3G44420.2  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At3g44425	chr3:016057731	0.0	W/16057731-16060385	AT3G44425.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 3.1e-41 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At3g44428	chr3:016067393	0.0	C/16067393-16067725	AT3G44428.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G45285.1); Has 11 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44428.1p  transcript_id AT3G44428.1  protein_id AT3G44428.1p  transcript_id AT3G44428.1  
At3g44430	chr3:016068301	0.0	W/16068301-16068921	AT3G44430.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44430.1p  transcript_id AT3G44430.1  protein_id AT3G44430.1p  transcript_id AT3G44430.1  
At3g44440	chr3:016070982	0.0	W/16070982-16071074,16071125-16071256	AT3G44440.1  CDS  gene_syn F14L2.2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, leaf; EXPRESSED DURING: LP.10 ten leaves visible; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44440.1p  transcript_id AT3G44440.1  protein_id AT3G44440.1p  transcript_id AT3G44440.1  
At3g44444	chr3:016072449	0.0	C/16072449-16072637	AT3G44444.1  miRNA  gene_syn MICRORNA849A, MIR849A  gene MIR849A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UAACUAAACAUUGGUGUAGUA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR849A (MICRORNA849A); miRNA  transcript_id AT3G44444.1  
At3g44450	chr3:016074228	0.0	C/16074228-16074578	AT3G44450.1  CDS  gene_syn F14L2.1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52740.1); Has 31 Blast hits to 31 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44450.1p  transcript_id AT3G44450.1  protein_id AT3G44450.1p  transcript_id AT3G44450.1  
At3g44460	chr3:016080916	0.0	C/16080916-16081722,16080700-16080771,16080557-16080586,16080115-16080201	AT3G44460.1  CDS  gene_syn AtbZIP67, DPBF2, basic leucine zipper transcription factor 67  gene DPBF2  function basic leucine zipper transcription factor (BZIP67), identical to basic leucine zipper transcription factor GI:18656053 from (Arabidopsis thaliana); identical to cDNA basic leucine zipper transcription factor (atbzip67 gene) GI:18656052. Located in the nucleus and expressed during seed maturation in the cotyledons.  go_component nucleus|GO:0005634|15642716|IDA  go_process positive regulation of gene-specific transcription|GO:0043193|19207209|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription activator activity|GO:0016563|19207209|IDA  go_function transcription activator binding|GO:0033613|19207209|IPI  product DPBF2; DNA binding / transcription activator/ transcription activator binding / transcription factor  note DPBF2; FUNCTIONS IN: transcription activator binding, transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: positive regulation of gene-specific transcription; LOCATED IN: nucleus; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: ABI5 (ABA INSENSITIVE 5); DNA binding / transcription activator/ transcription factor (TAIR:AT2G36270.1); Has 834 Blast hits to 766 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 2; Plants - 684; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT3G44460.1p  transcript_id AT3G44460.1  protein_id AT3G44460.1p  transcript_id AT3G44460.1  
At3g44470	chr3:016084755	0.0	C/16084755-16086568	AT3G44470.2  mRNA_TE_gene  pseudo  note Transposable element gene  transcript_id AT3G44470.2  
At3g44470	chr3:016085842	0.0	C/16085842-16086568	AT3G44470.1  mRNA_TE_gene  pseudo  note Transposable element gene  
At3g44480	chr3:016095861	0.0	C/16095861-16096041,16095230-16095773,16093996-16095103,16093610-16093909,16092089-16093502,16091970-16091999,16090878-16090885	AT3G44480.1  CDS  gene_syn RPP1, cog1, recognition of peronospora parasitica 1  gene RPP1  function Encodes a TIR-NB-LRR R-protein RPP1 that confers resistance to Peronospora parasitica (downy mildew).  go_component Golgi membrane|GO:0000139|16889647|IDA  go_component endoplasmic reticulum membrane|GO:0005789|16889647|IDA  go_component plasma membrane|GO:0005886|16889647|IDA  go_process response to oomycetes|GO:0002239|15894715|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_process defense response|GO:0006952|9811793|TAS  go_process defense response|GO:0006952||ISS  go_process defense response to fungus, incompatible interaction|GO:0009817|16889647|IMP  go_process defense response to fungus, incompatible interaction|GO:0009817|9811793|TAS  go_function LRR domain binding|GO:0030275|9811793|ISS  product RPP1 (recognition of peronospora parasitica 1); LRR domain binding  note recognition of peronospora parasitica 1 (RPP1); FUNCTIONS IN: LRR domain binding; INVOLVED IN: defense response to fungus, incompatible interaction, N-terminal protein myristoylation, response to oomycetes, defense response; LOCATED IN: plasma membrane, endoplasmic reticulum membrane, Golgi membrane; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat 3 (InterPro:IPR011713), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putative (TAIR:AT3G44630.3); Has 31686 Blast hits to 18061 proteins in 640 species: Archae - 34; Bacteria - 1610; Metazoa - 4189; Fungi - 239; Plants - 23084; Viruses - 14; Other Eukaryotes - 2516 (source: NCBI BLink).  protein_id AT3G44480.1p  transcript_id AT3G44480.1  protein_id AT3G44480.1p  transcript_id AT3G44480.1  
At3g44490	chr3:016097479	0.0	W/16097479-16097553,16097645-16097735,16097820-16097890,16097985-16098083,16098163-16098229,16098313-16098386	AT3G44490.1  CDS  gene_syn hda17, histone deacetylase 17  gene hda17  go_component nucleus|GO:0005634||IEA  go_process histone deacetylation|GO:0016575||IEA  go_function histone deacetylase activity|GO:0004407|12466527|ISS  product hda17 (histone deacetylase 17); histone deacetylase  note histone deacetylase 17 (hda17); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: histone deacetylation; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: HDA9 (HISTONE DEACETYLASE 9); histone deacetylase (TAIR:AT3G44680.1); Has 956 Blast hits to 956 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 455; Fungi - 218; Plants - 130; Viruses - 0; Other Eukaryotes - 153 (source: NCBI BLink).  protein_id AT3G44490.1p  transcript_id AT3G44490.1  protein_id AT3G44490.1p  transcript_id AT3G44490.1  
At3g44500	chr3:016101417	0.0	W/16101417-16106081	AT3G44500.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G47260.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G14130.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G04010.1); similar to hypothetical protein 26.t00072 [Brassica oleracea] (GB:ABD65017.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At3g44510	chr3:016110404	0.0	C/16110404-16110450,16109113-16109374,16108251-16108601	AT3G44510.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, root; BEST Arabidopsis thaliana protein match is: esterase/lipase/thioesterase family protein (TAIR:AT1G08310.2); Has 177 Blast hits to 176 proteins in 15 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44510.1p  transcript_id AT3G44510.1  protein_id AT3G44510.1p  transcript_id AT3G44510.1  
At3g44516	chr3:016112675	0.0	W/16112675-16113221	AT3G44516.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G31990; unknown protein  
At3g44530	chr3:016116026	0.0	W/16116026-16116133,16116669-16116944,16117041-16117292,16117442-16117833,16118105-16119101,16119525-16119735,16119838-16119939,16120026-16120266,16120355-16120477,16120700-16120814,16120888-16121247	AT3G44530.1  CDS  gene_syn Arabidopsis homolog of histone chaperone HIRA, HIRA  gene HIRA  function Encodes a nuclear localized WD-repeat containing protein involved in negative regulation of knox gene expression via epigenetic mechanism of chromatin re-organization. Interacts physically and genetically with AS1. Expressed in meristem and leaf primordia. Homozygous mutants are embryo lethal. Phenotype of cosuppressed lines is variable but show effects on leaf development similar to as1/as2.  go_component nucleus|GO:0005634|16243907|IDA  go_process negative regulation of gene expression, epigenetic|GO:0045814|16243907|TAS  go_function nucleotide binding|GO:0000166||ISS  go_function protein binding|GO:0005515|16243907|IPI  product HIRA (Arabidopsis homolog of histone chaperone HIRA); nucleotide binding / protein binding  note Arabidopsis homolog of histone chaperone HIRA (HIRA); FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: negative regulation of gene expression, epigenetic; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), TUP1-like enhancer of split (InterPro:IPR011494), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: FAS2 (FASCIATA 2); nucleotide binding / protein binding (TAIR:AT5G64630.2); Has 44436 Blast hits to 20443 proteins in 594 species: Archae - 56; Bacteria - 5173; Metazoa - 20377; Fungi - 8854; Plants - 3941; Viruses - 0; Other Eukaryotes - 6035 (source: NCBI BLink).  protein_id AT3G44530.1p  transcript_id AT3G44530.1  protein_id AT3G44530.1p  transcript_id AT3G44530.1  
At3g44540	chr3:016124079	0.0	W/16124079-16124154,16124650-16124753,16124892-16125097,16125258-16125358,16125802-16125994,16126083-16126244,16126346-16126427,16126968-16127237,16127381-16127508,16127610-16127769	AT3G44540.1  CDS  gene_syn FAR4, FATTY ACID REDUCTASE 4  gene FAR4  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process microsporogenesis|GO:0009556||ISS  go_function oxidoreductase activity, acting on the CH-CH group of donors|GO:0016627||ISS  product FAR4 (FATTY ACID REDUCTASE 4); binding / catalytic/ oxidoreductase, acting on the CH-CH group of donors  note FATTY ACID REDUCTASE 4 (FAR4); FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors, binding, catalytic activity; INVOLVED IN: microsporogenesis, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Male sterility (InterPro:IPR004262), NAD(P)-binding (InterPro:IPR016040), Male sterility, NAD-binding (InterPro:IPR013120); BEST Arabidopsis thaliana protein match is: FAR1 (FATTY ACID REDUCTASE 1); fatty acyl-CoA reductase (alcohol-forming)/ oxidoreductase, acting on the CH-CH group of donors (TAIR:AT5G22500.1); Has 1406 Blast hits to 1380 proteins in 190 species: Archae - 0; Bacteria - 170; Metazoa - 865; Fungi - 111; Plants - 136; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).  protein_id AT3G44540.1p  transcript_id AT3G44540.1  protein_id AT3G44540.1p  transcript_id AT3G44540.1  
At3g44540	chr3:016124079	0.0	W/16124079-16124154,16124650-16124753,16124892-16125097,16125258-16125358,16125802-16125994,16126083-16126244,16126346-16126427,16126968-16127237,16127436-16127508,16127610-16127644	AT3G44540.2  CDS  gene_syn FAR4, FATTY ACID REDUCTASE 4  gene FAR4  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process microsporogenesis|GO:0009556||ISS  go_function oxidoreductase activity, acting on the CH-CH group of donors|GO:0016627||ISS  product FAR4 (FATTY ACID REDUCTASE 4); binding / catalytic/ oxidoreductase, acting on the CH-CH group of donors  note FATTY ACID REDUCTASE 4 (FAR4); FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors, binding, catalytic activity; INVOLVED IN: microsporogenesis, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Male sterility, NAD-binding (InterPro:IPR013120); BEST Arabidopsis thaliana protein match is: FAR1 (FATTY ACID REDUCTASE 1); fatty acyl-CoA reductase (alcohol-forming)/ oxidoreductase, acting on the CH-CH group of donors (TAIR:AT5G22500.1); Has 1392 Blast hits to 1372 proteins in 190 species: Archae - 0; Bacteria - 170; Metazoa - 855; Fungi - 111; Plants - 133; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).  protein_id AT3G44540.2p  transcript_id AT3G44540.2  protein_id AT3G44540.2p  transcript_id AT3G44540.2  
At3g44550	chr3:016138060	0.0	W/16138060-16138135,16138510-16138613,16138716-16138921,16139026-16139126,16139221-16139416,16139505-16139666,16139832-16139913,16140057-16140326,16140991-16141118,16141244-16141409	AT3G44550.1  CDS  gene_syn FAR5, FATTY ACID REDUCTASE 5  gene FAR5  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process microsporogenesis|GO:0009556||ISS  go_function oxidoreductase activity, acting on the CH-CH group of donors|GO:0016627||ISS  product FAR5 (FATTY ACID REDUCTASE 5); binding / catalytic/ oxidoreductase, acting on the CH-CH group of donors  note FATTY ACID REDUCTASE 5 (FAR5); FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors, binding, catalytic activity; INVOLVED IN: microsporogenesis, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Male sterility (InterPro:IPR004262), NAD(P)-binding (InterPro:IPR016040), Male sterility, NAD-binding (InterPro:IPR013120); BEST Arabidopsis thaliana protein match is: FAR8 (FATTY ACID REDUCTASE 8); fatty acyl-CoA reductase (alcohol-forming)/ oxidoreductase, acting on the CH-CH group of donors (TAIR:AT3G44560.1); Has 1876 Blast hits to 1847 proteins in 338 species: Archae - 2; Bacteria - 455; Metazoa - 880; Fungi - 207; Plants - 136; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink).  protein_id AT3G44550.1p  transcript_id AT3G44550.1  protein_id AT3G44550.1p  transcript_id AT3G44550.1  
At3g44560	chr3:016151177	0.0	W/16151177-16151252,16151566-16151669,16151816-16152021,16152116-16152216,16152697-16152892,16152982-16153143,16153295-16153376,16153560-16153829,16153995-16154122,16154232-16154397	AT3G44560.1  CDS  gene_syn FAR8, FATTY ACID REDUCTASE 8  gene FAR8  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_process microsporogenesis|GO:0009556||ISS  go_function oxidoreductase activity, acting on the CH-CH group of donors|GO:0016627||ISS  go_function fatty acyl-CoA reductase (alcohol-forming) activity|GO:0080019|19062129|IDA  product FAR8 (FATTY ACID REDUCTASE 8); fatty acyl-CoA reductase (alcohol-forming)/ oxidoreductase, acting on the CH-CH group of donors  note FATTY ACID REDUCTASE 8 (FAR8); FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors, fatty acyl-CoA reductase (alcohol-forming) activity; INVOLVED IN: microsporogenesis, metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Male sterility (InterPro:IPR004262), NAD(P)-binding (InterPro:IPR016040), Male sterility, NAD-binding (InterPro:IPR013120); BEST Arabidopsis thaliana protein match is: FAR5 (FATTY ACID REDUCTASE 5); binding / catalytic/ oxidoreductase, acting on the CH-CH group of donors (TAIR:AT3G44550.1); Has 1765 Blast hits to 1740 proteins in 316 species: Archae - 0; Bacteria - 436; Metazoa - 870; Fungi - 157; Plants - 137; Viruses - 0; Other Eukaryotes - 165 (source: NCBI BLink).  protein_id AT3G44560.1p  transcript_id AT3G44560.1  protein_id AT3G44560.1p  transcript_id AT3G44560.1  
At3g44570	chr3:016159141	0.0	W/16159141-16159355,16159443-16159678,16159753-16159835	AT3G44570.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G30820.1); Has 16 Blast hits to 16 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44570.1p  transcript_id AT3G44570.1  protein_id AT3G44570.1p  transcript_id AT3G44570.1  
At3g44580	chr3:016160512	0.0	C/16160512-16161003	AT3G44580.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14000.1); Has 12 Blast hits to 12 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44580.1p  transcript_id AT3G44580.1  protein_id AT3G44580.1p  transcript_id AT3G44580.1  
At3g44590	chr3:016163983	0.0	W/16163983-16164070,16164301-16164521,16164632-16164658	AT3G44590.1  CDS  go_process translational elongation|GO:0006414||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic ribosome|GO:0022626|17934214|IDA  go_process translational elongation|GO:0006414||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S acidic ribosomal protein P2 (RPP2D)  note 60S acidic ribosomal protein P2 (RPP2D); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P2 (RPP2A) (TAIR:AT2G27720.1); Has 1572 Blast hits to 1571 proteins in 289 species: Archae - 42; Bacteria - 0; Metazoa - 608; Fungi - 352; Plants - 295; Viruses - 0; Other Eukaryotes - 275 (source: NCBI BLink).  protein_id AT3G44590.1p  transcript_id AT3G44590.1  protein_id AT3G44590.1p  transcript_id AT3G44590.1  
At3g44590	chr3:016163983	0.0	W/16163983-16164070,16164301-16164521,16164632-16164658	AT3G44590.2  CDS  go_process translational elongation|GO:0006414||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic ribosome|GO:0022626|17934214|IDA  go_process translational elongation|GO:0006414||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S acidic ribosomal protein P2 (RPP2D)  note 60S acidic ribosomal protein P2 (RPP2D); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P2 (RPP2A) (TAIR:AT2G27720.1); Has 1572 Blast hits to 1571 proteins in 289 species: Archae - 42; Bacteria - 0; Metazoa - 608; Fungi - 352; Plants - 295; Viruses - 0; Other Eukaryotes - 275 (source: NCBI BLink).  protein_id AT3G44590.2p  transcript_id AT3G44590.2  protein_id AT3G44590.2p  transcript_id AT3G44590.2  
At3g44600	chr3:016169017	0.0	C/16169017-16169201,16168764-16168849,16168587-16168675,16168141-16168380,16167927-16168048,16167564-16167639,16167328-16167435,16167070-16167246,16166411-16166628,16166115-16166247,16165787-16166010,16165534-16165687,16165368-16165451	AT3G44600.1  CDS  gene_syn CYCLOPHILIN71, CYP71  gene CYP71  function Cyclophilin71 is a WD40 domain cyclophilin, which functions in gene repression, organogenesis and meristem development. CYP71 physically interacts with histone H3.  go_component nucleus|GO:0005634|17704213|IDA  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process protein folding|GO:0006457||ISS  go_process regulation of flower development|GO:0009909|17704213|IMP  go_process meristem structural organization|GO:0009933|17704213|IMP  go_process regulation of root meristem growth|GO:0010082|17704213|IMP  go_process leaf vascular tissue pattern formation|GO:0010305|17704213|IMP  go_process leaf formation|GO:0010338|17704213|IMP  go_process leaf shaping|GO:0010358|17704213|IMP  go_process regulation of histone methylation|GO:0031060|17704213|IMP  go_process carpel development|GO:0048440|17704213|IMP  go_process stamen development|GO:0048443|17704213|IMP  go_process sepal formation|GO:0048453|17704213|IMP  go_function chromatin binding|GO:0003682|17704213|IDA  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  go_function histone binding|GO:0042393|17704213|IDA  product CYP71 (CYCLOPHILIN71); chromatin binding / histone binding / peptidyl-prolyl cis-trans isomerase  note CYCLOPHILIN71 (CYP71); FUNCTIONS IN: chromatin binding, peptidyl-prolyl cis-trans isomerase activity, histone binding; INVOLVED IN: in 11 processes; LOCATED IN: nucleus, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative (TAIR:AT2G36130.1); Has 13415 Blast hits to 13148 proteins in 1536 species: Archae - 84; Bacteria - 4354; Metazoa - 2578; Fungi - 1198; Plants - 783; Viruses - 0; Other Eukaryotes - 4418 (source: NCBI BLink).  protein_id AT3G44600.1p  transcript_id AT3G44600.1  protein_id AT3G44600.1p  transcript_id AT3G44600.1  
At3g44605	chr3:016175446	0.0	W/16175446-16180455	AT3G44605.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 9.1e-38 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At3g44610	chr3:016191563	0.0	C/16191563-16192107,16188790-16189223,16188266-16188642	AT3G44610.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: D6PKL2 (D6 PROTEIN KINASE LIKE 2); kinase (TAIR:AT5G47750.1); Has 74925 Blast hits to 55932 proteins in 1508 species: Archae - 18; Bacteria - 5814; Metazoa - 35736; Fungi - 8083; Plants - 8698; Viruses - 253; Other Eukaryotes - 16323 (source: NCBI BLink).  protein_id AT3G44610.1p  transcript_id AT3G44610.1  protein_id AT3G44610.1p  transcript_id AT3G44610.1  
At3g44620	chr3:016193858	0.0	W/16193858-16194223,16194620-16194755,16194915-16194982,16195052-16195138,16195360-16195422	AT3G44620.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function protein tyrosine phosphatase activity|GO:0004725||IEA  go_process protein amino acid dephosphorylation|GO:0006470||ISS  go_function protein tyrosine phosphatase activity|GO:0004725||ISS  product protein tyrosine phosphatase  note protein tyrosine phosphatase; FUNCTIONS IN: protein tyrosine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase/arsenate reductase (InterPro:IPR000106), Protein-tyrosine phosphatase, low molecular weight (InterPro:IPR017867); Has 2989 Blast hits to 2989 proteins in 980 species: Archae - 0; Bacteria - 2116; Metazoa - 277; Fungi - 94; Plants - 18; Viruses - 0; Other Eukaryotes - 484 (source: NCBI BLink).  protein_id AT3G44620.1p  transcript_id AT3G44620.1  protein_id AT3G44620.1p  transcript_id AT3G44620.1  
At3g44630	chr3:016196292	0.0	W/16196292-16196460,16196548-16197091,16197218-16198406,16198487-16198792,16198896-16200303,16200395-16200423	AT3G44630.1  CDS  go_component intrinsic to membrane|GO:0031224||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952|9395402|TAS  go_process defense response|GO:0006952||ISS  product disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putative  note disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: RPP1 (recognition of peronospora parasitica 1); LRR domain binding (TAIR:AT3G44480.1); Has 27799 Blast hits to 16167 proteins in 619 species: Archae - 24; Bacteria - 1623; Metazoa - 3384; Fungi - 191; Plants - 21118; Viruses - 4; Other Eukaryotes - 1455 (source: NCBI BLink).  protein_id AT3G44630.1p  transcript_id AT3G44630.1  protein_id AT3G44630.1p  transcript_id AT3G44630.1  
At3g44630	chr3:016196292	0.0	W/16196292-16196460,16196548-16197091,16197218-16198406,16198487-16198792,16198896-16200303,16200395-16200423	AT3G44630.2  CDS  go_component intrinsic to membrane|GO:0031224||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952|9395402|TAS  go_process defense response|GO:0006952||ISS  product disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putative  note disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putative; FUNCTIONS IN: protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: RPP1 (recognition of peronospora parasitica 1); LRR domain binding (TAIR:AT3G44480.1); Has 27799 Blast hits to 16167 proteins in 619 species: Archae - 24; Bacteria - 1623; Metazoa - 3384; Fungi - 191; Plants - 21118; Viruses - 4; Other Eukaryotes - 1455 (source: NCBI BLink).  protein_id AT3G44630.2p  transcript_id AT3G44630.2  protein_id AT3G44630.2p  transcript_id AT3G44630.2  
At3g44630	chr3:016196292	0.0	W/16196292-16196460,16196548-16197091,16197218-16198406,16198487-16198792,16198896-16200410	AT3G44630.3  CDS  go_component intrinsic to membrane|GO:0031224||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952|9395402|TAS  go_process defense response|GO:0006952||ISS  product disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putative  note disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: RPP1 (recognition of peronospora parasitica 1); LRR domain binding (TAIR:AT3G44480.1); Has 27835 Blast hits to 16226 proteins in 620 species: Archae - 24; Bacteria - 1666; Metazoa - 3382; Fungi - 193; Plants - 21110; Viruses - 4; Other Eukaryotes - 1456 (source: NCBI BLink).  protein_id AT3G44630.3p  transcript_id AT3G44630.3  protein_id AT3G44630.3p  transcript_id AT3G44630.3  
At3g44640	chr3:016207540	0.0	C/16207540-16209058	AT3G44640.1  mRNA_TE_gene  pseudo  note Transposable element gene, transposase IS4 family protein, contains Pfam profile: PF01609 transposase DDE domain  
At3g44650	chr3:016209849	0.0	C/16209849-16212164	AT3G44650.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 5.1e-43 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At3g44660	chr3:016215749	0.0	C/16215749-16215785,16215608-16215688,16215460-16215530,16215267-16215365,16215121-16215187,16214964-16215037	AT3G44660.1  CDS  gene_syn hda10, histone deacetylase 10  gene hda10  go_function histone deacetylase activity|GO:0004407|12466527|ISS  product hda10 (histone deacetylase 10); histone deacetylase  note histone deacetylase 10 (hda10); FUNCTIONS IN: histone deacetylase activity; CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: hda17 (histone deacetylase 17); histone deacetylase (TAIR:AT3G44490.1); Has 895 Blast hits to 895 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 431; Fungi - 212; Plants - 117; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).  protein_id AT3G44660.1p  transcript_id AT3G44660.1  protein_id AT3G44660.1p  transcript_id AT3G44660.1  
At3g44670	chr3:016217242	0.0	W/16217242-16217410,16217524-16218067,16218194-16219319,16219409-16219708,16219816-16221160,16221250-16221425	AT3G44670.1  CDS  go_component intrinsic to membrane|GO:0031224||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952|9811793|TAS  go_process defense response|GO:0006952||ISS  go_process defense response to bacterium|GO:0042742|9811793|ISS  product ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor  note ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor; FUNCTIONS IN: transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: defense response to bacterium, N-terminal protein myristoylation, defense response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat 3 (InterPro:IPR011713), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: RPP1 (recognition of peronospora parasitica 1); LRR domain binding (TAIR:AT3G44480.1); Has 30054 Blast hits to 17809 proteins in 664 species: Archae - 40; Bacteria - 2262; Metazoa - 3691; Fungi - 206; Plants - 21128; Viruses - 26; Other Eukaryotes - 2701 (source: NCBI BLink).  protein_id AT3G44670.1p  transcript_id AT3G44670.1  protein_id AT3G44670.1p  transcript_id AT3G44670.1  
At3g44670	chr3:016217242	0.0	W/16217242-16217410,16217524-16218067,16218194-16219319,16219409-16219708,16219816-16221160,16221250-16221425	AT3G44670.2  CDS  go_component intrinsic to membrane|GO:0031224||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952|9811793|TAS  go_process defense response|GO:0006952||ISS  go_process defense response to bacterium|GO:0042742|9811793|ISS  product ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor  note ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor; FUNCTIONS IN: protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: defense response to bacterium, defense response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat 3 (InterPro:IPR011713), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: RPP1 (recognition of peronospora parasitica 1); LRR domain binding (TAIR:AT3G44480.1); Has 30054 Blast hits to 17809 proteins in 664 species: Archae - 40; Bacteria - 2262; Metazoa - 3691; Fungi - 206; Plants - 21128; Viruses - 26; Other Eukaryotes - 2701 (source: NCBI BLink).  protein_id AT3G44670.2p  transcript_id AT3G44670.2  protein_id AT3G44670.2p  transcript_id AT3G44670.2  
At3g44680	chr3:016229716	0.0	C/16229716-16229752,16228960-16229072,16228721-16228838,16228573-16228647,16228279-16228498,16228129-16228192,16227947-16228039,16227755-16227863,16227598-16227647,16227413-16227503,16227265-16227335,16227072-16227170,16226926-16226992,16226769-16226842	AT3G44680.1  CDS  gene_syn HDA09, HDA9, HISTONE DEACETYLASE, HISTONE DEACETYLASE 9  gene HDA9  function Class I RPD3 type protein  go_component nucleus|GO:0005634||IEA  go_process histone deacetylation|GO:0016575||IEA  go_component nucleus|GO:0005634||ISS  go_process histone deacetylation|GO:0016575||ISS  go_function histone deacetylase activity|GO:0004407|12466527|ISS  go_function histone deacetylase activity|GO:0004407||ISS  product HDA9 (HISTONE DEACETYLASE 9); histone deacetylase  note HISTONE DEACETYLASE 9 (HDA9); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: histone deacetylation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: HD1 (HISTONE DEACETYLASE 1); basal transcription repressor/ histone deacetylase/ protein binding (TAIR:AT4G38130.2); Has 6581 Blast hits to 6456 proteins in 845 species: Archae - 124; Bacteria - 1990; Metazoa - 1145; Fungi - 363; Plants - 276; Viruses - 0; Other Eukaryotes - 2683 (source: NCBI BLink).  protein_id AT3G44680.1p  transcript_id AT3G44680.1  protein_id AT3G44680.1p  transcript_id AT3G44680.1  
At3g44690	chr3:016230685	0.0	C/16230685-16234215	AT3G44690.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; Has 351 Blast hits to 275 proteins in 72 species: Archae - 0; Bacteria - 23; Metazoa - 119; Fungi - 26; Plants - 8; Viruses - 2; Other Eukaryotes - 173 (source: NCBI BLink).  protein_id AT3G44690.1p  transcript_id AT3G44690.1  protein_id AT3G44690.1p  transcript_id AT3G44690.1  
At3g44700	chr3:016237159	0.0	C/16237159-16237736,16236343-16236871	AT3G44700.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44710.1); Has 579 Blast hits to 379 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 579; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44700.1p  transcript_id AT3G44700.1  protein_id AT3G44700.1p  transcript_id AT3G44700.1  
At3g44704	chr3:016244193	0.0	C/16244193-16244348	AT3G44704.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G44704.1p  transcript_id AT3G44704.1  protein_id AT3G44704.1p  transcript_id AT3G44704.1  
At3g44705	chr3:016244952	0.0	W/16244952-16250205	AT3G44705.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.6e-46 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At3g44710	chr3:016251942	0.0	C/16251942-16253456	AT3G44710.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22540.1); Has 511 Blast hits to 447 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 509; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G44710.1p  transcript_id AT3G44710.1  protein_id AT3G44710.1p  transcript_id AT3G44710.1  
At3g44713	chr3:016260205	0.0	W/16260205-16261149,16261325-16261762,16261987-16262484	AT3G44713.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14800.1); Has 60 Blast hits to 55 proteins in 20 species: Archae - 2; Bacteria - 9; Metazoa - 2; Fungi - 2; Plants - 31; Viruses - 1; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT3G44713.1p  transcript_id AT3G44713.1  protein_id AT3G44713.1p  transcript_id AT3G44713.1  
At3g44716	chr3:016263230	0.0	W/16263230-16263560,16263645-16263689,16264010-16264038	AT3G44716.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44716.2p  transcript_id AT3G44716.2  protein_id AT3G44716.2p  transcript_id AT3G44716.2  
At3g44716	chr3:016263230	0.0	W/16263230-16263560,16263645-16263751	AT3G44716.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44716.1p  transcript_id AT3G44716.1  protein_id AT3G44716.1p  transcript_id AT3G44716.1  
At3g44717	chr3:016264449	0.0	C/16264449-16264931	AT3G44717.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G03495; nucleotide binding protein  
At3g44718	chr3:016266111	0.0	C/16266111-16266314	AT3G44718.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20619.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44718.1p  transcript_id AT3G44718.1  protein_id AT3G44718.1p  transcript_id AT3G44718.1  
At3g44720	chr3:016271759	0.0	W/16271759-16273033	AT3G44720.1  CDS  gene_syn ADT4, arogenate dehydratase 4  gene ADT4  function Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identi& 64257;ed in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250].  go_process L-phenylalanine biosynthetic process|GO:0009094||IEA  go_component chloroplast|GO:0009507|19136569|IDA  go_process L-phenylalanine biosynthetic process|GO:0009094||ISS  go_function prephenate dehydratase activity|GO:0004664||ISS  go_function arogenate dehydratase activity|GO:0047769|17726025|IDA  product ADT4 (arogenate dehydratase 4); arogenate dehydratase/ prephenate dehydratase  note arogenate dehydratase 4 (ADT4); FUNCTIONS IN: arogenate dehydratase activity, prephenate dehydratase activity; INVOLVED IN: L-phenylalanine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prephenate dehydratase (InterPro:IPR001086), Prephenate dehydratase, conserved site (InterPro:IPR018528); BEST Arabidopsis thaliana protein match is: ADT5 (arogenate dehydratase 5); arogenate dehydratase/ prephenate dehydratase (TAIR:AT5G22630.1); Has 4942 Blast hits to 4941 proteins in 1194 species: Archae - 120; Bacteria - 2080; Metazoa - 0; Fungi - 69; Plants - 134; Viruses - 0; Other Eukaryotes - 2539 (source: NCBI BLink).  protein_id AT3G44720.1p  transcript_id AT3G44720.1  protein_id AT3G44720.1p  transcript_id AT3G44720.1  
At3g44730	chr3:016285888	0.0	W/16285888-16286013,16286212-16286358,16286524-16286901,16287043-16287111,16287206-16287433,16287567-16287648,16287731-16287826,16287914-16288093,16288267-16288373,16288479-16288657,16288752-16288916,16289009-16289262,16289354-16289517,16289597-16289791,16289883-16290628,16290705-16290852	AT3G44730.1  CDS  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product kinesin motor protein-related  note kinesin motor protein-related; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATP binding / microtubule motor (TAIR:AT2G47500.1); Has 7983 Blast hits to 7559 proteins in 254 species: Archae - 0; Bacteria - 32; Metazoa - 4083; Fungi - 900; Plants - 932; Viruses - 0; Other Eukaryotes - 2036 (source: NCBI BLink).  protein_id AT3G44730.1p  transcript_id AT3G44730.1  protein_id AT3G44730.1p  transcript_id AT3G44730.1  
At3g44735	chr3:016292049	0.0	C/16292049-16292118,16291886-16291950,16291388-16291498	AT3G44735.1  CDS  gene_syn ATPSK3, PHYTOSULFOKINE 3 PRECURSOR, PHYTOSULFOKINE PEPTIDE, PSK1  gene PSK1  function Phytosulfokine 3 precursor, coding for a unique plant peptide growth factor.  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell proliferation|GO:0008283||IEA  go_function growth factor activity|GO:0008083||IEA  product PSK1; growth factor  note PSK1; FUNCTIONS IN: growth factor activity; INVOLVED IN: cell proliferation; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phytosulfokine (InterPro:IPR009438); Has 52 Blast hits to 52 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44735.1p  transcript_id AT3G44735.1  protein_id AT3G44735.1p  transcript_id AT3G44735.1  
At3g44740	chr3:016297562	0.0	C/16297562-16297687,16297350-16297454,16297174-16297244,16296858-16297071,16296530-16296754,16296410-16296454	AT3G44740.1  CDS  go_component cytoplasm|GO:0005737||IEA  go_component endomembrane system|GO:0012505||IEA  go_process translation|GO:0006412||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_process glycyl-tRNA aminoacylation|GO:0006426||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function glycine-tRNA ligase activity|GO:0004820||IEA  go_function ATP binding|GO:0005524||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||ISS  go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS  go_function ATP binding|GO:0005524||ISS  product ATP binding / aminoacyl-tRNA ligase/ glycine-tRNA ligase/ nucleotide binding  note ATP binding / aminoacyl-tRNA ligase/ glycine-tRNA ligase/ nucleotide binding; FUNCTIONS IN: glycine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: translation, tRNA aminoacylation for protein translation, glycyl-tRNA aminoacylation; LOCATED IN: endomembrane system, cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (G, H, P and S), conserved region (InterPro:IPR002314), Glycyl-tRNA synthetase, alpha2 dimer, C-terminal (InterPro:IPR018160); BEST Arabidopsis thaliana protein match is: glycyl-tRNA synthetase / glycine--tRNA ligase (TAIR:AT1G29880.1); Has 2112 Blast hits to 1719 proteins in 565 species: Archae - 218; Bacteria - 665; Metazoa - 233; Fungi - 205; Plants - 56; Viruses - 0; Other Eukaryotes - 735 (source: NCBI BLink).  protein_id AT3G44740.1p  transcript_id AT3G44740.1  protein_id AT3G44740.1p  transcript_id AT3G44740.1  
At3g44750	chr3:016298045	0.0	W/16298045-16298057,16298292-16298362,16298447-16298672,16298779-16298814,16298885-16298979,16299106-16299259,16299348-16299426,16299522-16299585	AT3G44750.1  CDS  gene_syn ATHD2A, HD2A, HDA3, HDT1, HISTONE DEACETYLASE 2A, HISTONE DEACETYLASE 3  gene HDA3  function Encodes a histone deacetylase. Controls the development of adaxial/abaxial leaf polarity. Two lines with RNAi-directed against this gene show reduced Agrobacterium-mediated DNA transformation of the roots.  go_component nucleolus|GO:0005730|15496452|IDA  go_component nucleolus|GO:0005730|17293570|TAS  go_process DNA mediated transformation|GO:0009294|17827277|IMP  go_process polarity specification of adaxial/abaxial axis|GO:0009944|17293570|IMP  go_function nucleic acid binding|GO:0003676||ISS  go_function histone deacetylase activity|GO:0004407|12466527|ISS  go_function zinc ion binding|GO:0008270||ISS  product HDA3 (HISTONE DEACETYLASE 3); histone deacetylase/ nucleic acid binding / zinc ion binding  note HISTONE DEACETYLASE 3 (HDA3); FUNCTIONS IN: histone deacetylase activity, zinc ion binding, nucleic acid binding; INVOLVED IN: DNA mediated transformation, polarity specification of adaxial/abaxial axis; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: HD2B (HISTONE DEACETYLASE 2B); histone deacetylase (TAIR:AT5G22650.2); Has 5751 Blast hits to 4257 proteins in 335 species: Archae - 10; Bacteria - 274; Metazoa - 2884; Fungi - 830; Plants - 293; Viruses - 83; Other Eukaryotes - 1377 (source: NCBI BLink).  protein_id AT3G44750.1p  transcript_id AT3G44750.1  protein_id AT3G44750.1p  transcript_id AT3G44750.1  
At3g44755	chr3:016302003	0.0	W/16302003-16302101,16302201-16302317,16302405-16302599,16302693-16302731	AT3G44755.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46360.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44755.1p  transcript_id AT3G44755.1  protein_id AT3G44755.1p  transcript_id AT3G44755.1  
At3g44757	chr3:016304047	0.0	W/16304047-16304615	AT3G44757.1  pseudogenic_transcript  pseudo  function unknown pseudogene  
At3g44760	chr3:016305648	0.0	W/16305648-16306217	AT3G44760.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower, root; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44770.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44760.1p  transcript_id AT3G44760.1  protein_id AT3G44760.1p  transcript_id AT3G44760.1  
At3g44765	chr3:016311975	0.0	W/16311975-16314027	AT3G44765.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G44765.1  
At3g44770	chr3:016316080	0.0	W/16316080-16316255,16316406-16316459,16316719-16316935,16317002-16317136,16317231-16317435,16317516-16317628,16317706-16317789,16317885-16317973,16319014-16319458	AT3G44770.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29550.1); Has 56 Blast hits to 55 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44770.1p  transcript_id AT3G44770.1  protein_id AT3G44770.1p  transcript_id AT3G44770.1  
At3g44770	chr3:016316698	0.0	W/16316698-16316892,16317002-16317136,16317231-16317435,16317516-16317628,16317706-16317789,16317885-16318109	AT3G44770.2  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29550.1).  protein_id AT3G44770.2p  transcript_id AT3G44770.2  protein_id AT3G44770.2p  transcript_id AT3G44770.2  
At3g44780	chr3:016322584	0.0	C/16322584-16322604,16322261-16322464,16322026-16322098,16321624-16321949	AT3G44780.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: sperm cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19515.2); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44780.1p  transcript_id AT3G44780.1  protein_id AT3G44780.1p  transcript_id AT3G44780.1  
At3g44783	chr3:016326040	0.0	W/16326040-16326162	AT3G44783.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G44783.1p  transcript_id AT3G44783.1  protein_id AT3G44783.1p  transcript_id AT3G44783.1  
At3g44784	chr3:016327458	0.0	C/16327458-16327634	AT3G44784.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G44784.1p  transcript_id AT3G44784.1  protein_id AT3G44784.1p  transcript_id AT3G44784.1  
At3g44785	chr3:016328221	0.0	C/16328221-16328448	AT3G44785.1  CDS  go_component nucleus|GO:0005634||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product U2AF splicing factor subunit, putative / U2 auxiliary factor 38 kDa subunit, putative  note U2AF splicing factor subunit, putative / U2 auxiliary factor 38 kDa subunit, putative; FUNCTIONS IN: RNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), U2 auxiliary factor small subunit (InterPro:IPR009145); BEST Arabidopsis thaliana protein match is: U2AF35B; RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding (TAIR:AT5G42820.2); Has 437 Blast hits to 437 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 226; Fungi - 79; Plants - 66; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT3G44785.1p  transcript_id AT3G44785.1  protein_id AT3G44785.1p  transcript_id AT3G44785.1  
At3g44790	chr3:016328792	0.0	W/16328792-16328889,16328995-16329143,16329257-16329531,16329813-16330265	AT3G44790.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT3G44800.1); Has 672 Blast hits to 602 proteins in 98 species: Archae - 7; Bacteria - 49; Metazoa - 163; Fungi - 12; Plants - 293; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink).  protein_id AT3G44790.1p  transcript_id AT3G44790.1  protein_id AT3G44790.1p  transcript_id AT3G44790.1  
At3g44793	chr3:016330898	0.0	W/16330898-16331896	AT3G44793.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 1.1e-48 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At3g44796	chr3:016335174	0.0	W/16335174-16340018	AT3G44796.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 2.2e-307 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At3g44798	chr3:016342295	0.0	W/16342295-16343014	AT3G44798.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G44798.1  
At3g44800	chr3:016343333	0.0	W/16343333-16343430,16343529-16343689,16343779-16344074,16344361-16344815,16345135-16345393,16345550-16345852,16345905-16346027	AT3G44800.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT3G44790.1); Has 956 Blast hits to 775 proteins in 107 species: Archae - 0; Bacteria - 47; Metazoa - 313; Fungi - 14; Plants - 441; Viruses - 1; Other Eukaryotes - 140 (source: NCBI BLink).  protein_id AT3G44800.1p  transcript_id AT3G44800.1  protein_id AT3G44800.1p  transcript_id AT3G44800.1  
At3g44805	chr3:016350395	0.0	W/16350395-16350580,16350658-16350965,16351063-16351144,16351267-16351437	AT3G44805.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT3G44800.1); Has 169 Blast hits to 101 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 169; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44805.1p  transcript_id AT3G44805.1  protein_id AT3G44805.1p  transcript_id AT3G44805.1  
At3g44810	chr3:016359072	0.0	C/16359072-16359983,16358840-16358986,16358496-16358783	AT3G44810.1  CDS  go_process biological_process|GO:0008150||ND  product F-box family protein  note F-box family protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G42770.1); Has 1177 Blast hits to 1139 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1177; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44810.1p  transcript_id AT3G44810.1  protein_id AT3G44810.1p  transcript_id AT3G44810.1  
At3g44820	chr3:016364362	0.0	C/16364362-16364411,16364080-16364149,16361864-16363699	AT3G44820.1  CDS  go_process response to light stimulus|GO:0009416||IEA  go_function signal transducer activity|GO:0004871||IEA  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process response to light stimulus|GO:0009416||ISS  go_function signal transducer activity|GO:0004871||ISS  product protein binding / signal transducer  note protein binding / signal transducer; FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: phototropic-responsive NPH3 family protein (TAIR:AT1G30440.1); Has 447 Blast hits to 434 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 21; Fungi - 0; Plants - 426; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44820.1p  transcript_id AT3G44820.1  protein_id AT3G44820.1p  transcript_id AT3G44820.1  
At3g44830	chr3:016368890	0.0	W/16368890-16369284,16369964-16370186,16370362-16370648,16370775-16371114,16371212-16371477,16371870-16372356	AT3G44830.1  CDS  go_process lipid metabolic process|GO:0006629||IEA  go_function phosphatidylcholine-sterol O-acyltransferase activity|GO:0004607||IEA  go_component cellular_component|GO:0005575||ND  go_process lipid metabolic process|GO:0006629||ISS  go_function phosphatidylcholine-sterol O-acyltransferase activity|GO:0004607||ISS  product lecithin:cholesterol acyltransferase family protein / LACT family protein  note lecithin:cholesterol acyltransferase family protein / LACT family protein; FUNCTIONS IN: phosphatidylcholine-sterol O-acyltransferase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lecithin:cholesterol acyltransferase (InterPro:IPR003386); BEST Arabidopsis thaliana protein match is: ATPDAT; phosphatidylcholine-sterol O-acyltransferase (TAIR:AT5G13640.1); Has 503 Blast hits to 455 proteins in 173 species: Archae - 0; Bacteria - 7; Metazoa - 183; Fungi - 111; Plants - 104; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT3G44830.1p  transcript_id AT3G44830.1  protein_id AT3G44830.1p  transcript_id AT3G44830.1  
At3g44840	chr3:016373691	0.0	C/16373691-16373759,16372930-16373574,16372499-16372831	AT3G44840.1  CDS  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757||ISS  product S-adenosyl-L-methionine:carboxyl methyltransferase family protein  note S-adenosyl-L-methionine:carboxyl methyltransferase family protein; FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: FAMT (farnesoic acid carboxyl-O-methyltransferase); S-adenosylmethionine-dependent methyltransferase/ farnesoic acid O-methyltransferase (TAIR:AT3G44860.1); Has 581 Blast hits to 577 proteins in 89 species: Archae - 0; Bacteria - 31; Metazoa - 10; Fungi - 3; Plants - 437; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).  protein_id AT3G44840.1p  transcript_id AT3G44840.1  protein_id AT3G44840.1p  transcript_id AT3G44840.1  
At3g44850	chr3:016376728	0.0	C/16376728-16376931,16375339-16376307,16375193-16375240,16374617-16375000	AT3G44850.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase-related  note protein kinase-related; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G22840.1); Has 29545 Blast hits to 22651 proteins in 747 species: Archae - 2; Bacteria - 751; Metazoa - 13664; Fungi - 4576; Plants - 3934; Viruses - 16; Other Eukaryotes - 6602 (source: NCBI BLink).  protein_id AT3G44850.1p  transcript_id AT3G44850.1  protein_id AT3G44850.1p  transcript_id AT3G44850.1  
At3g44860	chr3:016379689	0.0	W/16379689-16379757,16379864-16380508,16380607-16380939	AT3G44860.1  CDS  gene_syn FAMT, farnesoic acid carboxyl-O-methyltransferase  gene FAMT  function Encodes a farnesoic acid carboxyl-O-methyltransferase.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757||ISS  go_function farnesoic acid O-methyltransferase activity|GO:0019010|16165084|IDA  product FAMT (farnesoic acid carboxyl-O-methyltransferase); S-adenosylmethionine-dependent methyltransferase/ farnesoic acid O-methyltransferase  note farnesoic acid carboxyl-O-methyltransferase (FAMT); FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, farnesoic acid O-methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine:carboxyl methyltransferase family protein (TAIR:AT3G44870.1); Has 593 Blast hits to 584 proteins in 89 species: Archae - 0; Bacteria - 31; Metazoa - 10; Fungi - 3; Plants - 443; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).  protein_id AT3G44860.1p  transcript_id AT3G44860.1  protein_id AT3G44860.1p  transcript_id AT3G44860.1  
At3g44870	chr3:016382277	0.0	W/16382277-16382345,16382436-16383071,16383171-16383605	AT3G44870.1  CDS  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757||ISS  product S-adenosyl-L-methionine:carboxyl methyltransferase family protein  note S-adenosyl-L-methionine:carboxyl methyltransferase family protein; FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: FAMT (farnesoic acid carboxyl-O-methyltransferase); S-adenosylmethionine-dependent methyltransferase/ farnesoic acid O-methyltransferase (TAIR:AT3G44860.1); Has 601 Blast hits to 592 proteins in 92 species: Archae - 0; Bacteria - 36; Metazoa - 10; Fungi - 3; Plants - 442; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT3G44870.1p  transcript_id AT3G44870.1  protein_id AT3G44870.1p  transcript_id AT3G44870.1  
At3g44880	chr3:016383858	0.0	W/16383858-16384271,16384575-16384810,16384905-16385031,16385120-16385256,16385340-16385499,16385572-16385856,16385950-16386204	AT3G44880.1  CDS  gene_syn ACCELERATED CELL DEATH 1, ACD1, LETHAL LEAF-SPOT 1 HOMOLOG, LLS1, PAO, PHEOPHORBIDE A OXYGENASE  gene ACD1  function Encodes a pheide a oxygenase (PAO). Accelerated cell death (acd1) mutants show rapid, spreading necrotic responses to both virulent and avirulent Pseudomonas syringae pv. maculicola or pv. tomato pathogens and to ethylene.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast inner membrane|GO:0009706|14657372|TAS  go_process cell death|GO:0008219|8220484|IMP  go_process defense response to bacterium, incompatible interaction|GO:0009816|8220484|IMP  go_process flower development|GO:0009908|16113212|IMP  go_process fruit development|GO:0010154|16113212|IMP  go_process chlorophyll catabolic process|GO:0015996|16113212|IMP  go_function pheophorbide a oxygenase activity|GO:0032441|14657372|IDA  go_function iron-sulfur cluster binding|GO:0051536|14657372|ISS  product ACD1 (ACCELERATED CELL DEATH 1); iron-sulfur cluster binding / pheophorbide a oxygenase  note ACCELERATED CELL DEATH 1 (ACD1); FUNCTIONS IN: iron-sulfur cluster binding, pheophorbide a oxygenase activity; INVOLVED IN: flower development, defense response to bacterium, incompatible interaction, chlorophyll catabolic process, cell death, fruit development; LOCATED IN: chloroplast, chloroplast inner membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rieske [2Fe-2S] iron-sulphur domain (InterPro:IPR017941), Rieske [2Fe-2S] region (InterPro:IPR005806), Pheophorbide a oxygenase (InterPro:IPR013626); BEST Arabidopsis thaliana protein match is: ACD1-LIKE (ACD1-LIKE); 2 iron, 2 sulfur cluster binding / electron carrier/ oxidoreductase (TAIR:AT4G25650.1); Has 3000 Blast hits to 2997 proteins in 448 species: Archae - 4; Bacteria - 1942; Metazoa - 40; Fungi - 8; Plants - 267; Viruses - 0; Other Eukaryotes - 739 (source: NCBI BLink).  protein_id AT3G44880.1p  transcript_id AT3G44880.1  protein_id AT3G44880.1p  transcript_id AT3G44880.1  
At3g44890	chr3:016386505	0.0	W/16386505-16386657,16386992-16387119,16387276-16387321,16387463-16387560,16387644-16387691,16387843-16387963	AT3G44890.1  CDS  gene_syn RIBOSOMAL PROTEIN L9, RPL9  gene RPL9  function Plastid ribosomal protein CL9  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component plastid large ribosomal subunit|GO:0000311|1581570|TAS  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412|1581570|TAS  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735|1581570|ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product RPL9 (RIBOSOMAL PROTEIN L9); structural constituent of ribosome  note RIBOSOMAL PROTEIN L9 (RPL9); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: plastid large ribosomal subunit, ribosome, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L9 (InterPro:IPR000244), Ribosomal protein L9 N-terminal-like (InterPro:IPR009027); Has 4806 Blast hits to 4806 proteins in 1402 species: Archae - 0; Bacteria - 2971; Metazoa - 2; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 1777 (source: NCBI BLink).  protein_id AT3G44890.1p  transcript_id AT3G44890.1  protein_id AT3G44890.1p  transcript_id AT3G44890.1  
At3g44900	chr3:016388724	0.0	W/16388724-16388987,16389078-16390136,16390230-16391360	AT3G44900.1  CDS  gene_syn ATCHX4, CATION/H+ EXCHANGER 4, CHX4  gene ATCHX4  function member of Putative Na+/H+ antiporter family  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|IC  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product ATCHX4 (CATION/H+ EXCHANGER 4); monovalent cation:proton antiporter/ sodium:hydrogen antiporter  note CATION/H+ EXCHANGER 4 (ATCHX4); FUNCTIONS IN: monovalent cation:proton antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: embryo, male gametophyte, pollen tube, leaf; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123), Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: ATCHX3; monovalent cation:proton antiporter (TAIR:AT5G22900.1); Has 2073 Blast hits to 2055 proteins in 680 species: Archae - 109; Bacteria - 1539; Metazoa - 0; Fungi - 82; Plants - 270; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT3G44900.1p  transcript_id AT3G44900.1  protein_id AT3G44900.1p  transcript_id AT3G44900.1  
At3g44910	chr3:016393209	0.0	C/16393209-16394255,16392064-16393134	AT3G44910.1  CDS  gene_syn ATCHX12, CATION/H+ EXCHANGER 12, CHX12  gene ATCHX12  function member of Putative Na+/H+ antiporter family  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|IC  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product ATCHX12; monovalent cation:proton antiporter/ sodium:hydrogen antiporter  note ATCHX12; FUNCTIONS IN: monovalent cation:proton antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte, pollen tube; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: ATCHX10 (CATION/H+ EXCHANGER 10); monovalent cation:proton antiporter/ sodium:hydrogen antiporter (TAIR:AT3G44930.1); Has 878 Blast hits to 862 proteins in 291 species: Archae - 45; Bacteria - 484; Metazoa - 0; Fungi - 84; Plants - 224; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT3G44910.1p  transcript_id AT3G44910.1  protein_id AT3G44910.1p  transcript_id AT3G44910.1  
At3g44920	chr3:016398239	0.0	C/16398239-16399141,16397038-16398150	AT3G44920.1  CDS  gene_syn ATCHX11, CATION/H+ EXCHANGER 11, CHX11  gene ATCHX11  function member of Putative Na+/H+ antiporter family  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|IC  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product ATCHX11; monovalent cation:proton antiporter/ sodium:hydrogen antiporter  note ATCHX11; FUNCTIONS IN: monovalent cation:proton antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: ATCHX10 (CATION/H+ EXCHANGER 10); monovalent cation:proton antiporter/ sodium:hydrogen antiporter (TAIR:AT3G44930.1); Has 1218 Blast hits to 1209 proteins in 444 species: Archae - 74; Bacteria - 774; Metazoa - 0; Fungi - 78; Plants - 223; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT3G44920.1p  transcript_id AT3G44920.1  protein_id AT3G44920.1p  transcript_id AT3G44920.1  
At3g44930	chr3:016404460	0.0	C/16404460-16404672,16403253-16404278,16402058-16403170	AT3G44930.1  CDS  gene_syn ATCHX10, CATION/H+ EXCHANGER 10, CHX10  gene ATCHX10  function member of Putative Na+/H+ antiporter family  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|IC  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product ATCHX10 (CATION/H+ EXCHANGER 10); monovalent cation:proton antiporter/ sodium:hydrogen antiporter  note CATION/H+ EXCHANGER 10 (ATCHX10); FUNCTIONS IN: monovalent cation:proton antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: ATCHX11; monovalent cation:proton antiporter/ sodium:hydrogen antiporter (TAIR:AT3G44920.1); Has 1874 Blast hits to 1862 proteins in 651 species: Archae - 113; Bacteria - 1325; Metazoa - 0; Fungi - 78; Plants - 233; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).  protein_id AT3G44930.1p  transcript_id AT3G44930.1  protein_id AT3G44930.1p  transcript_id AT3G44930.1  
At3g44935	chr3:016409003	0.0	W/16409003-16409317,16409593-16409610	AT3G44935.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28420.1); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44935.1p  transcript_id AT3G44935.1  protein_id AT3G44935.1p  transcript_id AT3G44935.1  
At3g44940	chr3:016415084	0.0	C/16415084-16415134,16413861-16414562	AT3G44940.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1635 (InterPro:IPR012862); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22930.1); Has 57 Blast hits to 57 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT3G44940.1p  transcript_id AT3G44940.1  protein_id AT3G44940.1p  transcript_id AT3G44940.1  
At3g44950	chr3:016421045	0.0	W/16421045-16421170,16421194-16421286	AT3G44950.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 10917 Blast hits to 3523 proteins in 398 species: Archae - 8; Bacteria - 5691; Metazoa - 2009; Fungi - 551; Plants - 1172; Viruses - 162; Other Eukaryotes - 1324 (source: NCBI BLink).  protein_id AT3G44950.1p  transcript_id AT3G44950.1  protein_id AT3G44950.1p  transcript_id AT3G44950.1  
At3g44955	chr3:016427041	0.0	C/16427041-16427112	AT3G44955.1  tRNA  gene_syn 67246.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: TCC)  transcript_id AT3G44955.1  
At3g44960	chr3:016427795	0.0	W/16427795-16427899,16428359-16428427,16428549-16428672,16428754-16428814,16428887-16429151	AT3G44960.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 14 Blast hits to 14 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44960.1p  transcript_id AT3G44960.1  protein_id AT3G44960.1p  transcript_id AT3G44960.1  
At3g44970	chr3:016432443	0.0	W/16432443-16432651,16432738-16433062,16433169-16433321,16433414-16433662,16433914-16434006,16434072-16434150,16434253-16434359,16434624-16434848	AT3G44970.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product cytochrome P450 family protein  note cytochrome P450 family protein; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, shoot apex, cotyledon, hypocotyl, leaf; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group IV (InterPro:IPR002403), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP708A2; oxygen binding / thalianol hydroxylase (TAIR:AT5G48000.6); Has 22437 Blast hits to 22383 proteins in 1247 species: Archae - 23; Bacteria - 3579; Metazoa - 9571; Fungi - 3470; Plants - 4633; Viruses - 6; Other Eukaryotes - 1155 (source: NCBI BLink).  protein_id AT3G44970.1p  transcript_id AT3G44970.1  protein_id AT3G44970.1p  transcript_id AT3G44970.1  
At3g44980	chr3:016441023	0.0	W/16441023-16441031,16441139-16441281,16441561-16441639,16441756-16441909,16441971-16442098	AT3G44980.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G07215.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G44980.1p  transcript_id AT3G44980.1  protein_id AT3G44980.1p  transcript_id AT3G44980.1  
At3g44990	chr3:016448477	0.0	C/16448477-16448678,16448037-16448137,16447724-16447941,16447280-16447640	AT3G44990.1  CDS  gene_syn ATXTR8, XTR8, XYLOGLUCAN ENDO-TRANSGLYCOSYLASE-RELATED 8  gene XTR8  function xyloglucan endo-transglycosylase  go_component cell wall|GO:0005618||IEA  go_component apoplast|GO:0048046||IEA  go_process cell wall biogenesis|GO:0042546||TAS  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762||ISS  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product XTR8 (XYLOGLUCAN ENDO-TRANSGLYCOSYLASE-RELATED 8); hydrolase, acting on glycosyl bonds / xyloglucan:xyloglucosyl transferase  note XYLOGLUCAN ENDO-TRANSGLYCOSYLASE-RELATED 8 (XTR8); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: cell wall biogenesis; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative (TAIR:AT2G36870.1); Has 1215 Blast hits to 1209 proteins in 188 species: Archae - 2; Bacteria - 153; Metazoa - 0; Fungi - 203; Plants - 794; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT3G44990.1p  transcript_id AT3G44990.1  protein_id AT3G44990.1p  transcript_id AT3G44990.1  
At3g45000	chr3:016460348	0.0	W/16460348-16460359,16460447-16460536,16460626-16460728,16460819-16460940,16461027-16461221,16461327-16461407	AT3G45000.1  CDS  gene_syn VPS24, VPS24.2  gene VPS24.2  go_component ESCRT III complex|GO:0000815|17090720|ISS  go_process vesicle-mediated transport|GO:0016192|16488176|ISS  product VPS24.2  note VPS24.2; INVOLVED IN: vesicle-mediated transport; LOCATED IN: ESCRT III complex; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: VPS24.1 (TAIR:AT5G22950.1); Has 802 Blast hits to 802 proteins in 157 species: Archae - 4; Bacteria - 4; Metazoa - 339; Fungi - 160; Plants - 202; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT3G45000.1p  transcript_id AT3G45000.1  protein_id AT3G45000.1p  transcript_id AT3G45000.1  
At3g45000	chr3:016460707	0.0	W/16460707-16460728,16460819-16460940,16461027-16461221,16461327-16461407	AT3G45000.2  CDS  gene_syn VPS24, VPS24.2  gene VPS24.2  go_component ESCRT III complex|GO:0000815|17090720|ISS  go_process vesicle-mediated transport|GO:0016192|16488176|ISS  product VPS24.2  note VPS24.2; INVOLVED IN: vesicle-mediated transport; LOCATED IN: ESCRT III complex; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: VPS24.1 (TAIR:AT5G22950.1).  protein_id AT3G45000.2p  transcript_id AT3G45000.2  protein_id AT3G45000.2p  transcript_id AT3G45000.2  
At3g45010	chr3:016466328	0.0	W/16466328-16466671,16467025-16467193,16467295-16467414,16467488-16467631,16467708-16467858,16467962-16468056,16468149-16468407,16468509-16468642,16468729-16468845	AT3G45010.1  CDS  gene_syn scpl48, serine carboxypeptidase-like 48  gene scpl48  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl48 (serine carboxypeptidase-like 48); serine-type carboxypeptidase  note serine carboxypeptidase-like 48 (scpl48); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl47 (serine carboxypeptidase-like 47); serine-type carboxypeptidase (TAIR:AT5G22980.1); Has 2457 Blast hits to 2380 proteins in 257 species: Archae - 0; Bacteria - 89; Metazoa - 594; Fungi - 575; Plants - 898; Viruses - 0; Other Eukaryotes - 301 (source: NCBI BLink).  protein_id AT3G45010.1p  transcript_id AT3G45010.1  protein_id AT3G45010.1p  transcript_id AT3G45010.1  
At3g45020	chr3:016469167	0.0	C/16469167-16469568	AT3G45020.1  CDS  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  product 50S ribosomal protein-related  note 50S ribosomal protein-related; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18/L5 (InterPro:IPR005484); Has 216 Blast hits to 216 proteins in 79 species: Archae - 0; Bacteria - 146; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT3G45020.1p  transcript_id AT3G45020.1  protein_id AT3G45020.1p  transcript_id AT3G45020.1  
At3g45030	chr3:016472195	0.0	C/16472195-16472312,16471923-16472036,16471606-16471748	AT3G45030.1  CDS  go_process translation|GO:0006412||IEA  go_function RNA binding|GO:0003723||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component small ribosomal subunit|GO:0015935||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S20 (RPS20A)  note 40S ribosomal protein S20 (RPS20A); FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, small ribosomal subunit; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Ribosomal protein S10, conserved site (InterPro:IPR018268), Ribosomal protein S10, eukaryotic/archaeal (InterPro:IPR005729), Ribosomal protein S10 (InterPro:IPR001848); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S20 (RPS20C) (TAIR:AT5G62300.2); Has 5001 Blast hits to 5001 proteins in 1494 species: Archae - 173; Bacteria - 2599; Metazoa - 280; Fungi - 90; Plants - 120; Viruses - 0; Other Eukaryotes - 1739 (source: NCBI BLink).  protein_id AT3G45030.1p  transcript_id AT3G45030.1  protein_id AT3G45030.1p  transcript_id AT3G45030.1  
At3g45040	chr3:016475509	0.0	C/16475509-16475702,16475286-16475398,16475005-16475208,16474822-16474926,16474557-16474627,16474403-16474483,16474106-16474320,16473799-16473988,16473629-16473694,16473453-16473541,16473233-16473347,16473101-16473152,16472801-16473015	AT3G45040.1  CDS  function Encodes a putative dolichol kinase.  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process phospholipid biosynthetic process|GO:0008654||ISS  go_function dolichol kinase activity|GO:0004168|16361393|ISS  go_function phosphatidate cytidylyltransferase activity|GO:0004605||ISS  product phosphatidate cytidylyltransferase family protein  note phosphatidate cytidylyltransferase family protein; FUNCTIONS IN: phosphatidate cytidylyltransferase activity, dolichol kinase activity; INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidate cytidylyltransferase (InterPro:IPR000374); Has 295 Blast hits to 293 proteins in 158 species: Archae - 4; Bacteria - 36; Metazoa - 95; Fungi - 85; Plants - 20; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT3G45040.1p  transcript_id AT3G45040.1  protein_id AT3G45040.1p  transcript_id AT3G45040.1  
At3g45050	chr3:016476023	0.0	W/16476023-16476077,16476512-16476696,16476787-16476935,16477020-16477107	AT3G45050.2  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 13 Blast hits to 13 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G45050.2p  transcript_id AT3G45050.2  protein_id AT3G45050.2p  transcript_id AT3G45050.2  
At3g45050	chr3:016476023	0.0	W/16476023-16476077,16476512-16476696,16476787-16476935,16477020-16477107	AT3G45050.3  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 13 Blast hits to 13 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G45050.3p  transcript_id AT3G45050.3  protein_id AT3G45050.3p  transcript_id AT3G45050.3  
At3g45050	chr3:016476023	0.0	W/16476023-16476077,16476512-16476696,16476787-16476935,16477020-16477107	AT3G45050.4  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 13 Blast hits to 13 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G45050.4p  transcript_id AT3G45050.4  protein_id AT3G45050.4p  transcript_id AT3G45050.4  
At3g45050	chr3:016476023	0.0	W/16476023-16476077,16476512-16476696,16476787-16476939	AT3G45050.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 13 Blast hits to 13 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G45050.1p  transcript_id AT3G45050.1  protein_id AT3G45050.1p  transcript_id AT3G45050.1  
At3g45060	chr3:016478547	0.0	C/16478547-16479386,16477671-16478459	AT3G45060.1  CDS  gene_syn ATNRT2.6  gene ATNRT2.6  function member of High affinity nitrate transporter family  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_function nitrate transmembrane transporter activity|GO:0015112||ISS  product ATNRT2.6; nitrate transmembrane transporter  note ATNRT2.6; FUNCTIONS IN: nitrate transmembrane transporter activity; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: sepal, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ATNRT2.3; nitrate transmembrane transporter (TAIR:AT5G60780.1); Has 3769 Blast hits to 3688 proteins in 826 species: Archae - 41; Bacteria - 3196; Metazoa - 24; Fungi - 197; Plants - 158; Viruses - 0; Other Eukaryotes - 153 (source: NCBI BLink).  protein_id AT3G45060.1p  transcript_id AT3G45060.1  protein_id AT3G45060.1p  transcript_id AT3G45060.1  
At3g45070	chr3:016486378	0.0	C/16486378-16487349	AT3G45070.1  CDS  go_function sulfotransferase activity|GO:0008146||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function sulfotransferase activity|GO:0008146||ISS  product sulfotransferase family protein  note sulfotransferase family protein; FUNCTIONS IN: sulfotransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Sulfotransferase (InterPro:IPR000863); BEST Arabidopsis thaliana protein match is: sulfotransferase family protein (TAIR:AT3G45080.1); Has 2245 Blast hits to 2207 proteins in 147 species: Archae - 0; Bacteria - 151; Metazoa - 1459; Fungi - 1; Plants - 307; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink).  protein_id AT3G45070.1p  transcript_id AT3G45070.1  protein_id AT3G45070.1p  transcript_id AT3G45070.1  
At3g45080	chr3:016488716	0.0	C/16488716-16489705	AT3G45080.1  CDS  go_function sulfotransferase activity|GO:0008146||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function sulfotransferase activity|GO:0008146||ISS  product sulfotransferase family protein  note sulfotransferase family protein; FUNCTIONS IN: sulfotransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Sulfotransferase (InterPro:IPR000863); BEST Arabidopsis thaliana protein match is: sulfotransferase family protein (TAIR:AT3G45070.1); Has 2231 Blast hits to 2198 proteins in 148 species: Archae - 0; Bacteria - 136; Metazoa - 1451; Fungi - 1; Plants - 308; Viruses - 0; Other Eukaryotes - 335 (source: NCBI BLink).  protein_id AT3G45080.1p  transcript_id AT3G45080.1  protein_id AT3G45080.1p  transcript_id AT3G45080.1  
At3g45090	chr3:016494300	0.0	C/16494300-16494400,16493513-16493806,16492848-16492929,16492267-16492659,16491450-16492169,16491240-16491362,16490752-16491135	AT3G45090.2  CDS  go_component endomembrane system|GO:0012505||IEA  product 2-phosphoglycerate kinase-related  note 2-phosphoglycerate kinase-related; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: 2-phosphoglycerate kinase-related (TAIR:AT5G60760.1); Has 12161 Blast hits to 4444 proteins in 347 species: Archae - 70; Bacteria - 5401; Metazoa - 2660; Fungi - 705; Plants - 230; Viruses - 130; Other Eukaryotes - 2965 (source: NCBI BLink).  protein_id AT3G45090.2p  transcript_id AT3G45090.2  protein_id AT3G45090.2p  transcript_id AT3G45090.2  
At3g45090	chr3:016494300	0.0	C/16494300-16494452,16493513-16493811,16492848-16492929,16492267-16492659,16491450-16492169,16491240-16491362,16490752-16491135	AT3G45090.1  CDS  product 2-phosphoglycerate kinase-related  note 2-phosphoglycerate kinase-related; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: 2-phosphoglycerate kinase-related (TAIR:AT5G60760.1); Has 12160 Blast hits to 4447 proteins in 347 species: Archae - 70; Bacteria - 5403; Metazoa - 2657; Fungi - 708; Plants - 231; Viruses - 127; Other Eukaryotes - 2964 (source: NCBI BLink).  protein_id AT3G45090.1p  transcript_id AT3G45090.1  protein_id AT3G45090.1p  transcript_id AT3G45090.1  
At3g45093	chr3:016496811	0.0	W/16496811-16496868,16497106-16497290	AT3G45093.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G43401.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G45093.1p  transcript_id AT3G45093.1  protein_id AT3G45093.1p  transcript_id AT3G45093.1  
At3g45095	chr3:016499710	0.0	C/16499710-16504054	AT3G45095.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.4e-140 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)  
At3g45100	chr3:016504648	0.0	W/16504648-16504767,16505071-16505643,16505741-16505895,16505991-16506081,16506183-16506299,16506402-16506505,16506593-16506683,16506766-16506858	AT3G45100.1  CDS  gene_syn SETH2  gene SETH2  function encodes Arabidopsis homolog of a conserved protein involved in the first step of the GPI biosynthetic pathway.  go_process GPI anchor biosynthetic process|GO:0006506||IEA  go_process biosynthetic process|GO:0009058||IEA  go_component cellular_component|GO:0005575||ND  go_process GPI anchor biosynthetic process|GO:0006506||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product SETH2; transferase, transferring glycosyl groups  note SETH2; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: GPI anchor biosynthetic process, biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: PIGA, GPI anchor biosynthesis (InterPro:IPR013234), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: glycosyl transferase family 1 protein (TAIR:AT1G73160.1); Has 12338 Blast hits to 12320 proteins in 1382 species: Archae - 604; Bacteria - 8264; Metazoa - 143; Fungi - 111; Plants - 108; Viruses - 0; Other Eukaryotes - 3108 (source: NCBI BLink).  protein_id AT3G45100.1p  transcript_id AT3G45100.1  protein_id AT3G45100.1p  transcript_id AT3G45100.1  
At3g45100	chr3:016504648	0.0	W/16504648-16504767,16505071-16505643,16505741-16505895,16505991-16506081,16506183-16506299,16506402-16506505,16506593-16506683,16506766-16506858	AT3G45100.2  CDS  gene_syn SETH2  gene SETH2  function encodes Arabidopsis homolog of a conserved protein involved in the first step of the GPI biosynthetic pathway.  go_process GPI anchor biosynthetic process|GO:0006506||IEA  go_process biosynthetic process|GO:0009058||IEA  go_component cellular_component|GO:0005575||ND  go_process GPI anchor biosynthetic process|GO:0006506||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product SETH2; transferase, transferring glycosyl groups  note SETH2; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: GPI anchor biosynthetic process, biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: PIGA, GPI anchor biosynthesis (InterPro:IPR013234), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: glycosyl transferase family 1 protein (TAIR:AT1G73160.1); Has 12338 Blast hits to 12320 proteins in 1382 species: Archae - 604; Bacteria - 8264; Metazoa - 143; Fungi - 111; Plants - 108; Viruses - 0; Other Eukaryotes - 3108 (source: NCBI BLink).  protein_id AT3G45100.2p  transcript_id AT3G45100.2  protein_id AT3G45100.2p  transcript_id AT3G45100.2  
At3g45110	chr3:016508170	0.0	W/16508170-16508532	AT3G45110.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G45110.1p  transcript_id AT3G45110.1  protein_id AT3G45110.1p  transcript_id AT3G45110.1  
At3g45120	chr3:016511730	0.0	C/16511730-16512050	AT3G45120.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G17900.1)  
At3g45130	chr3:016517334	0.0	C/16517334-16517522,16516199-16516393,16515909-16515998,16515616-16515810,16515280-16515531,16515029-16515217,16514827-16514940,16514629-16514751,16514419-16514541,16514218-16514316,16514096-16514152,16513961-16514007,16513740-16513883,16513401-16513659,16513239-16513322,16513049-16513155,16512552-16512555	AT3G45130.1  CDS  gene_syn LAS1  gene LAS1  go_component cellular_component|GO:0005575||ND  go_process pentacyclic triterpenoid biosynthetic process|GO:0019745||ISS  go_function lanosterol synthase activity|GO:0000250|16445886|IDA  product LAS1; lanosterol synthase  note LAS1; FUNCTIONS IN: lanosterol synthase activity; INVOLVED IN: pentacyclic triterpenoid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Terpene synthase, conserved site (InterPro:IPR002365), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Squalene cyclase (InterPro:IPR018333), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: CAS1 (cycloartenol synthase 1); cycloartenol synthase (TAIR:AT2G07050.1); Has 1444 Blast hits to 1246 proteins in 359 species: Archae - 2; Bacteria - 672; Metazoa - 72; Fungi - 162; Plants - 338; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink).  protein_id AT3G45130.1p  transcript_id AT3G45130.1  protein_id AT3G45130.1p  transcript_id AT3G45130.1  
At3g45140	chr3:016525437	0.0	W/16525437-16525788,16526118-16526930,16527035-16527120,16527456-16527566,16527653-16527954,16528108-16528374,16528474-16529233	AT3G45140.1  CDS  gene_syn ARABIODOPSIS THALIANA LIPOXYGENASE 2, ATLOX2, LIPOXYGENASE 2, LOX2  gene LOX2  function Chloroplast lipoxygenase required for wound-induced jasmonic acid accumulation in Arabidopsis.Mutants are resistant to Staphylococcus aureus and accumulate salicylic acid upon infection.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast|GO:0009507|7567995|TAS  go_component chloroplast|GO:0009507|8290626|ISS  go_process response to water deprivation|GO:0009414|8290626|TAS  go_process response to wounding|GO:0009611|8290626|IEP  go_process response to fungus|GO:0009620|19220788|IEP  go_process response to salt stress|GO:0009651|11351099|IEP  go_process jasmonic acid biosynthetic process|GO:0009695|7567995|IMP  go_process jasmonic acid biosynthetic process|GO:0009695|7567995|TAS  go_process jasmonic acid biosynthetic process|GO:0009695|8290626|TAS  go_process response to jasmonic acid stimulus|GO:0009753|15860010|IEP  go_process response to jasmonic acid stimulus|GO:0009753|8290626|IEP  go_process response to other organism|GO:0051707|8290626|TAS  go_function lipoxygenase activity|GO:0016165|7567995|IMP  product LOX2 (LIPOXYGENASE 2); lipoxygenase  note LIPOXYGENASE 2 (LOX2); FUNCTIONS IN: lipoxygenase activity; INVOLVED IN: in 7 processes; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Lipoxygenase, C-terminal (InterPro:IPR013819), Lipoxygenase (InterPro:IPR000907), Lipoxygenase, plant (InterPro:IPR001246); BEST Arabidopsis thaliana protein match is: lipoxygenase family protein (TAIR:AT1G67560.1); Has 1102 Blast hits to 1092 proteins in 146 species: Archae - 0; Bacteria - 64; Metazoa - 477; Fungi - 37; Plants - 508; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT3G45140.1p  transcript_id AT3G45140.1  protein_id AT3G45140.1p  transcript_id AT3G45140.1  
At3g45150	chr3:016531179	0.0	W/16531179-16531676	AT3G45150.1  CDS  gene_syn TCP domain protein 16, TCP16  gene TCP16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product TCP16 (TCP domain protein 16); transcription factor  note TCP domain protein 16 (TCP16); FUNCTIONS IN: transcription factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor, putative (TAIR:AT5G41030.1); Has 897 Blast hits to 897 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 897; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G45150.1p  transcript_id AT3G45150.1  protein_id AT3G45150.1p  transcript_id AT3G45150.1  
At3g45160	chr3:016533655	0.0	C/16533655-16533930	AT3G45160.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G45160.1p  transcript_id AT3G45160.1  protein_id AT3G45160.1p  transcript_id AT3G45160.1  
At3g45170	chr3:016537538	0.0	W/16537538-16537693,16537774-16538232	AT3G45170.1  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product zinc finger (GATA type) family protein  note zinc finger (GATA type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: zinc finger (GATA type) family protein (TAIR:AT5G66320.2); Has 969 Blast hits to 928 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 66; Fungi - 446; Plants - 411; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT3G45170.1p  transcript_id AT3G45170.1  protein_id AT3G45170.1p  transcript_id AT3G45170.1  
At3g45180	chr3:016538991	0.0	C/16538991-16539212	AT3G45180.1  CDS  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product ubiquitin family protein  note ubiquitin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: UBL5 (UBIQUITIN-LIKE PROTEIN 5) (TAIR:AT5G42300.1); Has 300 Blast hits to 300 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 142; Fungi - 77; Plants - 44; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT3G45180.1p  transcript_id AT3G45180.1  protein_id AT3G45180.1p  transcript_id AT3G45180.1  
At3g45190	chr3:016548123	0.0	C/16548123-16548161,16547519-16547622,16547145-16547231,16546957-16547032,16546768-16546842,16546592-16546645,16546190-16546249,16545996-16546112,16545508-16545602,16545218-16545426,16544702-16544799,16544448-16544551,16544183-16544345,16543781-16543903,16543284-16543427,16542985-16543185,16542884-16542913,16542731-16542801,16541994-16542636	AT3G45190.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product SIT4 phosphatase-associated family protein  note SIT4 phosphatase-associated family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SIT4 phosphatase-associated protein (InterPro:IPR007587); BEST Arabidopsis thaliana protein match is: SIT4 phosphatase-associated family protein (TAIR:AT1G07990.1); Has 913 Blast hits to 820 proteins in 169 species: Archae - 2; Bacteria - 85; Metazoa - 357; Fungi - 190; Plants - 72; Viruses - 2; Other Eukaryotes - 205 (source: NCBI BLink).  protein_id AT3G45190.1p  transcript_id AT3G45190.1  protein_id AT3G45190.1p  transcript_id AT3G45190.1  
At3g45200	chr3:016548828	0.0	C/16548828-16549730	AT3G45200.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64870.1); Has 41 Blast hits to 41 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G45200.1p  transcript_id AT3G45200.1  protein_id AT3G45200.1p  transcript_id AT3G45200.1  
At3g45210	chr3:016557482	0.0	C/16557482-16557928	AT3G45210.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF584 (InterPro:IPR007608); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G60680.1); Has 202 Blast hits to 202 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 202; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G45210.1p  transcript_id AT3G45210.1  protein_id AT3G45210.1p  transcript_id AT3G45210.1  
At3g45220	chr3:016565941	0.0	C/16565941-16566330,16564881-16565672	AT3G45220.1  CDS  go_function serine-type endopeptidase inhibitor activity|GO:0004867||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function serine-type endopeptidase inhibitor activity|GO:0004867||ISS  product serpin, putative / serine protease inhibitor, putative  note serpin, putative / serine protease inhibitor, putative; FUNCTIONS IN: serine-type endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Protease inhibitor I4, serpin, plant (InterPro:IPR015554), Protease inhibitor I4, serpin (InterPro:IPR000215); BEST Arabidopsis thaliana protein match is: serine-type endopeptidase inhibitor (TAIR:AT2G25240.1); Has 4801 Blast hits to 4751 proteins in 328 species: Archae - 54; Bacteria - 217; Metazoa - 3724; Fungi - 1; Plants - 217; Viruses - 426; Other Eukaryotes - 162 (source: NCBI BLink).  protein_id AT3G45220.1p  transcript_id AT3G45220.1  protein_id AT3G45220.1p  transcript_id AT3G45220.1  
At3g45230	chr3:016569123	0.0	W/16569123-16569650	AT3G45230.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 9069 Blast hits to 3057 proteins in 443 species: Archae - 18; Bacteria - 881; Metazoa - 741; Fungi - 552; Plants - 1780; Viruses - 503; Other Eukaryotes - 4594 (source: NCBI BLink).  protein_id AT3G45230.1p  transcript_id AT3G45230.1  protein_id AT3G45230.1p  transcript_id AT3G45230.1  
At3g45240	chr3:016572612	0.0	C/16572612-16572902,16572455-16572529,16572318-16572362,16572058-16572132,16571847-16571934,16571637-16571761,16571448-16571543,16571171-16571353,16570985-16571063,16570774-16570907	AT3G45240.1  CDS  gene_syn ATSNAK2, F18N11.1, GEMINIVIRUS REP INTERACTING KINASE 1, GRIK1  gene GRIK1  function Encodes a geminivirus Rep interacting kinase (GRIK; GRIK1/AT3G45240, GRIK2/AT5G60550). GRIKs are SnRK1 (SNF1-related kinases) activating kinases. Both GRIKs specifically bind to the SnRK1 catalytic subunit and phosphorylate the equivalent threonine residue in its activation loop in vitro.  go_process protein amino acid phosphorylation|GO:0006468|17237223|IDA  go_process protein amino acid phosphorylation|GO:0006468|19339507|IDA  go_function kinase activity|GO:0016301|17237223|IDA  go_function kinase activity|GO:0016301|19339507|IDA  go_function kinase activity|GO:0016301||ISS  product GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1); kinase  note GEMINIVIRUS REP INTERACTING KINASE 1 (GRIK1); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2); kinase (TAIR:AT5G60550.1); Has 85920 Blast hits to 84478 proteins in 3310 species: Archae - 55; Bacteria - 7984; Metazoa - 37527; Fungi - 8076; Plants - 15556; Viruses - 453; Other Eukaryotes - 16269 (source: NCBI BLink).  protein_id AT3G45240.1p  transcript_id AT3G45240.1  protein_id AT3G45240.1p  transcript_id AT3G45240.1  
At3g45240	chr3:016572612	0.0	C/16572612-16572902,16572455-16572529,16572318-16572362,16572058-16572132,16571847-16571934,16571637-16571761,16571448-16571543,16571171-16571353,16570985-16571063,16570774-16570907	AT3G45240.2  CDS  gene_syn ATSNAK2, F18N11.1, GEMINIVIRUS REP INTERACTING KINASE 1, GRIK1  gene GRIK1  function Encodes a geminivirus Rep interacting kinase (GRIK; GRIK1/AT3G45240, GRIK2/AT5G60550). GRIKs are SnRK1 (SNF1-related kinases) activating kinases. Both GRIKs specifically bind to the SnRK1 catalytic subunit and phosphorylate the equivalent threonine residue in its activation loop in vitro.  go_process protein amino acid phosphorylation|GO:0006468|17237223|IDA  go_process protein amino acid phosphorylation|GO:0006468|19339507|IDA  go_function kinase activity|GO:0016301|17237223|IDA  go_function kinase activity|GO:0016301|19339507|IDA  go_function kinase activity|GO:0016301||ISS  product GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1); kinase  note GEMINIVIRUS REP INTERACTING KINASE 1 (GRIK1); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2); kinase (TAIR:AT5G60550.1); Has 85920 Blast hits to 84478 proteins in 3310 species: Archae - 55; Bacteria - 7984; Metazoa - 37527; Fungi - 8076; Plants - 15556; Viruses - 453; Other Eukaryotes - 16269 (source: NCBI BLink).  protein_id AT3G45240.2p  transcript_id AT3G45240.2  protein_id AT3G45240.2p  transcript_id AT3G45240.2  
At3g45242	chr3:016573089	0.0	C/16573089-16573166	AT3G45242.1  CDS  gene_syn CPuORF61, Conserved peptide upstream open reading frame 61  gene CPuORF61  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF61 represents a conserved upstream opening reading frame relative to major ORF AT3G45240.1  product CPuORF61 (Conserved peptide upstream open reading frame 61)  note Conserved peptide upstream open reading frame 61 (CPuORF61); BEST Arabidopsis thaliana protein match is: CPuORF62 (Conserved peptide upstream open reading frame 62) (TAIR:AT5G60548.1); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G45242.1p  transcript_id AT3G45242.1  protein_id AT3G45242.1p  transcript_id AT3G45242.1  
At3g45243	chr3:016575823	0.0	W/16575823-16576173	AT3G45243.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G45245.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G45243.1p  transcript_id AT3G45243.1  protein_id AT3G45243.1p  transcript_id AT3G45243.1  
At3g45245	chr3:016578384	0.0	W/16578384-16578734	AT3G45245.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G45243.1); Has 11 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G45245.1p  transcript_id AT3G45245.1  protein_id AT3G45245.1p  transcript_id AT3G45245.1  
At3g45248	chr3:016581929	0.0	W/16581929-16582273	AT3G45248.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G45245.1); Has 9 Blast hits to 9 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G45248.1p  transcript_id AT3G45248.1  protein_id AT3G45248.1p  transcript_id AT3G45248.1  
At3g45250	chr3:016583723	0.0	W/16583723-16584148	AT3G45250.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 9.2e-08 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At3g45252	chr3:016586074	0.0	W/16586074-16586364	AT3G45252.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G45248.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G45252.1p  transcript_id AT3G45252.1  protein_id AT3G45252.1p  transcript_id AT3G45252.1  
At3g45253	chr3:016589291	0.0	C/16589291-16594622	AT3G45253.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 3.0e-48 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)  
At3g45256	chr3:016595099	0.0	W/16595099-16596232	AT3G45256.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to putative AP endonuclease/reverse transcriptase, similar to putative non-LTR retroelement reverse transcriptase; blastp match of 32% identity and 8.5e-42 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}  
At3g45260	chr3:016598406	0.0	C/16598406-16598550,16597824-16598223,16596850-16597645	AT3G45260.1  CDS  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT5G60470.1); Has 46509 Blast hits to 17661 proteins in 205 species: Archae - 0; Bacteria - 7; Metazoa - 42260; Fungi - 233; Plants - 385; Viruses - 0; Other Eukaryotes - 3624 (source: NCBI BLink).  protein_id AT3G45260.1p  transcript_id AT3G45260.1  protein_id AT3G45260.1p  transcript_id AT3G45260.1  
At3g45270	chr3:016601323	0.0	C/16601323-16603563	AT3G45270.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 5.7e-58 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At3g45275	chr3:016605894	0.0	W/16605894-16606238	AT3G45275.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G45285.1); Has 9 Blast hits to 9 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G45275.1p  transcript_id AT3G45275.1  protein_id AT3G45275.1p  transcript_id AT3G45275.1  
At3g45280	chr3:016613149	0.0	C/16613149-16613304,16612615-16612740,16612355-16612523,16612176-16612261,16612024-16612092,16611898-16611942,16611697-16611759,16611558-16611634,16611445-16611457	AT3G45280.1  CDS  gene_syn ATSYP72, SYNTAXIN OF PLANTS 72, SYP72  gene SYP72  function syntaxin of plants 72 (SYP72)  go_component integral to membrane|GO:0016021|11115874|TAS  go_process intracellular protein transport|GO:0006886|11115874|TAS  go_function protein transporter activity|GO:0008565|11115874|TAS  product SYP72 (SYNTAXIN OF PLANTS 72); protein transporter  note SYNTAXIN OF PLANTS 72 (SYP72); FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport; LOCATED IN: integral to membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012); BEST Arabidopsis thaliana protein match is: SYP71 (SYNTAXIN OF PLANTS 71); protein transporter (TAIR:AT3G09740.1); Has 468 Blast hits to 468 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 209; Fungi - 39; Plants - 114; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).  protein_id AT3G45280.1p  transcript_id AT3G45280.1  protein_id AT3G45280.1p  transcript_id AT3G45280.1  
At3g45285	chr3:016614566	0.0	W/16614566-16614901	AT3G45285.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44428.1); Has 12 Blast hits to 11 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G45285.1p  transcript_id AT3G45285.1  protein_id AT3G45285.1p  transcript_id AT3G45285.1  
At3g45290	chr3:016617586	0.0	W/16617586-16617735,16618082-16618139,16618314-16618516,16619143-16619259,16619391-16619451,16619545-16619633,16619737-16619811,16619898-16619986,16620063-16620112,16620216-16620256,16620338-16620511,16620586-16620621,16620733-16620800,16620910-16620970,16621098-16621352	AT3G45290.1  CDS  gene_syn ATMLO3, MILDEW RESISTANCE LOCUS O 3, MLO3  gene MLO3  function A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO3 belongs to the clade IV, with AtMLO2, AtMLO6 and AtMLO12. The gene is expressed during early seedling growth, in primary root and lateral root primordia, in fruit abscission zone, in vascular system of cotyledons and in trichomes of young leaves,; it was not expressed in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).  go_component integral to membrane|GO:0016021||IEA  go_process cell death|GO:0008219||IEA  go_component plasma membrane|GO:0005886||ISS  go_process defense response|GO:0006952||ISS  go_process cell death|GO:0008219||ISS  go_function calmodulin binding|GO:0005516||ISS  product MLO3 (MILDEW RESISTANCE LOCUS O 3); calmodulin binding  note MILDEW RESISTANCE LOCUS O 3 (MLO3); FUNCTIONS IN: calmodulin binding; INVOLVED IN: cell death, defense response; LOCATED IN: integral to membrane, plasma membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326); BEST Arabidopsis thaliana protein match is: MLO12 (MILDEW RESISTANCE LOCUS O 12); calmodulin binding (TAIR:AT2G39200.1); Has 294 Blast hits to 290 proteins in 34 species: Archae - 0; Bacteria - 9; Metazoa - 0; Fungi - 0; Plants - 282; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G45290.1p  transcript_id AT3G45290.1  protein_id AT3G45290.1p  transcript_id AT3G45290.1  
At3g45300	chr3:016624738	0.0	C/16624738-16624848,16624304-16624387,16624163-16624220,16623932-16624056,16623808-16623852,16623536-16623584,16623306-16623415,16623136-16623212,16622967-16623017,16622809-16622873,16622450-16622604,16622321-16622361,16622181-16622235,16622013-16622069,16621659-16621805	AT3G45300.1  CDS  gene_syn ATIVD, ISOVALERYL-COA-DEHYDROGENASE, ISOVALERYL-COA-DEHYDROGENASE PRECURSOR, IVD  gene IVD  function Encodes isovaleryl-coenzyme a dehydrogenase.  go_component mitochondrion|GO:0005739|17137349|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|14764908|IDA  go_component mitochondrial matrix|GO:0005759|11402190|IDA  go_process leucine catabolic process|GO:0006552|11402190|IDA  go_function isovaleryl-CoA dehydrogenase activity|GO:0008470|10380813|ISS  go_function isovaleryl-CoA dehydrogenase activity|GO:0008470|11402190|IDA  product IVD (ISOVALERYL-COA-DEHYDROGENASE); ATP binding / isovaleryl-CoA dehydrogenase  note ISOVALERYL-COA-DEHYDROGENASE (IVD); FUNCTIONS IN: isovaleryl-CoA dehydrogenase activity, ATP binding; INVOLVED IN: leucine catabolic process; LOCATED IN: mitochondrion, mitochondrial matrix; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal (InterPro:IPR013764), Acyl-CoA oxidase/dehydrogenase, type 1 (InterPro:IPR006090), Acyl-CoA dehydrogenase/oxidase, middle and N-terminal (InterPro:IPR009100), Acyl-CoA dehydrogenase/oxidase, N-terminal (InterPro:IPR013786), Acyl-CoA dehydrogenase/oxidase, central region (InterPro:IPR006091), Acyl-CoA dehydrogenase, conserved site (InterPro:IPR006089), Acyl-CoA dehydrogenase/oxidase C-terminal (InterPro:IPR009075), Acyl-CoA dehydrogenase, N-terminal (InterPro:IPR006092); BEST Arabidopsis thaliana protein match is: ACX4 (ACYL-COA OXIDASE 4); acyl-CoA oxidase/ oxidoreductase (TAIR:AT3G51840.1); Has 31884 Blast hits to 31665 proteins in 1179 species: Archae - 261; Bacteria - 16847; Metazoa - 1482; Fungi - 514; Plants - 171; Viruses - 0; Other Eukaryotes - 12609 (source: NCBI BLink).  protein_id AT3G45300.1p  transcript_id AT3G45300.1  protein_id AT3G45300.1p  transcript_id AT3G45300.1  
At3g45310	chr3:016630280	0.0	C/16630280-16630473,16630085-16630206,16629817-16629932,16629649-16629722,16629300-16629564,16629091-16629222,16628871-16629006,16628704-16628741	AT3G45310.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product cysteine proteinase, putative  note cysteine proteinase, putative; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: AALP (Arabidopsis aleurain-like protease); cysteine-type peptidase (TAIR:AT5G60360.1); Has 6209 Blast hits to 6164 proteins in 602 species: Archae - 25; Bacteria - 133; Metazoa - 2840; Fungi - 4; Plants - 1213; Viruses - 129; Other Eukaryotes - 1865 (source: NCBI BLink).  protein_id AT3G45310.1p  transcript_id AT3G45310.1  protein_id AT3G45310.1p  transcript_id AT3G45310.1  
At3g45310	chr3:016630280	0.0	C/16630280-16630473,16630085-16630206,16629817-16629932,16629649-16629722,16629300-16629564,16629091-16629222,16628874-16629006,16628704-16628741	AT3G45310.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product cysteine proteinase, putative  note cysteine proteinase, putative; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: AALP (Arabidopsis aleurain-like protease); cysteine-type peptidase (TAIR:AT5G60360.2); Has 6202 Blast hits to 6160 proteins in 602 species: Archae - 25; Bacteria - 133; Metazoa - 2836; Fungi - 4; Plants - 1212; Viruses - 129; Other Eukaryotes - 1863 (source: NCBI BLink).  protein_id AT3G45310.2p  transcript_id AT3G45310.2  protein_id AT3G45310.2p  transcript_id AT3G45310.2  
At3g45320	chr3:016631646	0.0	W/16631646-16632146	AT3G45320.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G60330.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G45320.1p  transcript_id AT3G45320.1  protein_id AT3G45320.1p  transcript_id AT3G45320.1  
At3g45330	chr3:016632440	0.0	C/16632440-16634488	AT3G45330.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product lectin protein kinase family protein  note lectin protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: stem, leaf whorl, cauline leaf, root, cultured cell; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin protein kinase family protein (TAIR:AT5G60320.1); Has 74998 Blast hits to 74253 proteins in 2794 species: Archae - 34; Bacteria - 7319; Metazoa - 31918; Fungi - 5287; Plants - 18450; Viruses - 310; Other Eukaryotes - 11680 (source: NCBI BLink).  protein_id AT3G45330.1p  transcript_id AT3G45330.1  protein_id AT3G45330.1p  transcript_id AT3G45330.1  
At3g45340	chr3:016636472	0.0	W/16636472-16638835	AT3G45340.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 3.3e-47 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g45350	chr3:016639041	0.0	W/16639041-16640511	AT3G45350.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14330.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At3g45360	chr3:016641619	0.0	W/16641619-16641999	AT3G45360.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G04394.1)  
At3g45370	chr3:016642780	0.0	W/16642780-16643632	AT3G45370.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14340.1)  
At3g45380	chr3:016644521	0.0	C/16644521-16647172	AT3G45380.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G04400.1); similar to P. falciparum RESA-like protein with DnaJ domain [Plasmodium falciparum 3D7] (GB:NP_703336.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048)  
At3g45390	chr3:016648740	0.0	C/16648740-16649974,16647921-16648500	AT3G45390.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product lectin protein kinase family protein  note lectin protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Tyrosine protein kinase (InterPro:IPR001245), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: lectin protein kinase family protein (TAIR:AT3G45330.1); Has 18546 Blast hits to 11569 proteins in 348 species: Archae - 0; Bacteria - 42; Metazoa - 390; Fungi - 40; Plants - 17996; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT3G45390.1p  transcript_id AT3G45390.1  protein_id AT3G45390.1p  transcript_id AT3G45390.1  
At3g45400	chr3:016651963	0.0	W/16651963-16652832,16652922-16653479	AT3G45400.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product exostosin family protein  note exostosin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: EDA5 (embryo sac development arrest 5); catalytic (TAIR:AT3G03650.1); Has 827 Blast hits to 822 proteins in 82 species: Archae - 0; Bacteria - 4; Metazoa - 186; Fungi - 4; Plants - 567; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT3G45400.1p  transcript_id AT3G45400.1  protein_id AT3G45400.1p  transcript_id AT3G45400.1  
At3g45410	chr3:016654019	0.0	C/16654019-16656013	AT3G45410.1  CDS  function encodes a receptor-like kinase that has serine/threonine kinase activity whose expression is induced by high salt stress. This induction is inhibited by tobacco ethylene receptor.  go_component plasma membrane|GO:0005886|15067507|IDA  go_process response to salt stress|GO:0009651|15067507|IEP  go_process response to ethylene stimulus|GO:0009723|15067507|IEP  go_function transmembrane receptor protein serine/threonine kinase activity|GO:0004675|15067507|IDA  go_function kinase activity|GO:0016301||ISS  product lectin protein kinase family protein  note lectin protein kinase family protein; FUNCTIONS IN: transmembrane receptor protein serine/threonine kinase activity, kinase activity; INVOLVED IN: response to ethylene stimulus, response to salt stress; LOCATED IN: plasma membrane; EXPRESSED IN: flower, root, leaf; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin protein kinase family protein (TAIR:AT3G45420.1); Has 83545 Blast hits to 82553 proteins in 3104 species: Archae - 45; Bacteria - 7581; Metazoa - 36008; Fungi - 6509; Plants - 19390; Viruses - 349; Other Eukaryotes - 13663 (source: NCBI BLink).  protein_id AT3G45410.1p  transcript_id AT3G45410.1  protein_id AT3G45410.1p  transcript_id AT3G45410.1  
At3g45420	chr3:016657263	0.0	C/16657263-16659266	AT3G45420.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function kinase activity|GO:0016301||ISS  product lectin protein kinase family protein  note lectin protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin protein kinase family protein (TAIR:AT3G45410.1); Has 86033 Blast hits to 84943 proteins in 3095 species: Archae - 45; Bacteria - 7776; Metazoa - 37180; Fungi - 6768; Plants - 19628; Viruses - 380; Other Eukaryotes - 14256 (source: NCBI BLink).  protein_id AT3G45420.1p  transcript_id AT3G45420.1  protein_id AT3G45420.1p  transcript_id AT3G45420.1  
At3g45430	chr3:016660759	0.0	C/16660759-16662600	AT3G45430.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product lectin protein kinase family protein  note lectin protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin protein kinase family protein (TAIR:AT5G60300.3); Has 80606 Blast hits to 79659 proteins in 2813 species: Archae - 36; Bacteria - 7194; Metazoa - 34872; Fungi - 6225; Plants - 18773; Viruses - 345; Other Eukaryotes - 13161 (source: NCBI BLink).  protein_id AT3G45430.1p  transcript_id AT3G45430.1  protein_id AT3G45430.1p  transcript_id AT3G45430.1  
At3g45440	chr3:016664875	0.0	C/16664875-16666884	AT3G45440.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product lectin protein kinase family protein  note lectin protein kinase family protein; FUNCTIONS IN: carbohydrate binding, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin protein kinase family protein (TAIR:AT5G60320.1); Has 79787 Blast hits to 78909 proteins in 2919 species: Archae - 41; Bacteria - 7004; Metazoa - 34595; Fungi - 6209; Plants - 18686; Viruses - 326; Other Eukaryotes - 12926 (source: NCBI BLink).  protein_id AT3G45440.1p  transcript_id AT3G45440.1  protein_id AT3G45440.1p  transcript_id AT3G45440.1  
At3g45443	chr3:016669168	0.0	C/16669168-16669296,16668523-16668687	AT3G45443.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G45443.1p  transcript_id AT3G45443.1  protein_id AT3G45443.1p  transcript_id AT3G45443.1  
At3g45446	chr3:016669846	0.0	C/16669846-16671931	AT3G45446.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 8.8e-37 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At3g45450	chr3:016673146	0.0	W/16673146-16673438,16673499-16673505,16673596-16673679,16673769-16673834,16673963-16674151,16674293-16674309,16674396-16674573,16674689-16674880	AT3G45450.1  CDS  go_process protein metabolic process|GO:0019538||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||ISS  product Clp amino terminal domain-containing protein  note Clp amino terminal domain-containing protein; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: protein metabolic process; CONTAINS InterPro DOMAIN/s: Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: HSP93-III; ATP binding / ATPase/ DNA binding / nuclease/ nucleoside-triphosphatase/ nucleotide binding / protein binding (TAIR:AT3G48870.1); Has 10427 Blast hits to 10232 proteins in 1512 species: Archae - 9; Bacteria - 6643; Metazoa - 4; Fungi - 178; Plants - 200; Viruses - 4; Other Eukaryotes - 3389 (source: NCBI BLink).  protein_id AT3G45450.1p  transcript_id AT3G45450.1  protein_id AT3G45450.1p  transcript_id AT3G45450.1  
At3g45460	chr3:016679711	0.0	C/16679711-16680043,16678947-16679632,16678680-16678830	AT3G45460.1  CDS  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT3G45480.1); Has 1224 Blast hits to 1216 proteins in 129 species: Archae - 0; Bacteria - 0; Metazoa - 569; Fungi - 178; Plants - 264; Viruses - 0; Other Eukaryotes - 213 (source: NCBI BLink).  protein_id AT3G45460.1p  transcript_id AT3G45460.1  protein_id AT3G45460.1p  transcript_id AT3G45460.1  
At3g45470	chr3:016680705	0.0	C/16680705-16681261,16680505-16680616	AT3G45470.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger protein-related  note zinc finger protein-related; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger protein-related (TAIR:AT2G25360.1); Has 2185 Blast hits to 2179 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 1096; Fungi - 392; Plants - 335; Viruses - 2; Other Eukaryotes - 360 (source: NCBI BLink).  protein_id AT3G45470.1p  transcript_id AT3G45470.1  protein_id AT3G45470.1p  transcript_id AT3G45470.1  
At3g45480	chr3:016684317	0.0	C/16684317-16684592,16683530-16684236,16683263-16683428	AT3G45480.1  CDS  go_function zinc ion binding|GO:0008270||IEA  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: sepal; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT3G45460.1); Has 1700 Blast hits to 1671 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 786; Fungi - 254; Plants - 356; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink).  protein_id AT3G45480.1p  transcript_id AT3G45480.1  protein_id AT3G45480.1p  transcript_id AT3G45480.1  
At3g45490	chr3:016687524	0.0	C/16687524-16687838,16687066-16687386	AT3G45490.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem; BEST Arabidopsis thaliana protein match is: zinc finger protein-related (TAIR:AT2G25370.1); Has 70 Blast hits to 67 proteins in 6 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G45490.1p  transcript_id AT3G45490.1  protein_id AT3G45490.1p  transcript_id AT3G45490.1  
At3g45500	chr3:016689474	0.0	C/16689474-16689693,16689052-16689166,16688772-16688852,16688594-16688681,16688418-16688519	AT3G45500.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G45580.1); Has 40 Blast hits to 38 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G45500.1p  transcript_id AT3G45500.1  protein_id AT3G45500.1p  transcript_id AT3G45500.1  
At3g45510	chr3:016691090	0.0	C/16691090-16691728,16690790-16690924	AT3G45510.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT3G45480.1); Has 1119 Blast hits to 1107 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 547; Fungi - 120; Plants - 281; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).  protein_id AT3G45510.1p  transcript_id AT3G45510.1  protein_id AT3G45510.1p  transcript_id AT3G45510.1  
At3g45520	chr3:016692706	0.0	C/16692706-16696797	AT3G45520.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.0e-308 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At3g45525	chr3:016697596	0.0	C/16697596-16697828,16697273-16697393	AT3G45525.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT3G45480.1); Has 27 Blast hits to 25 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G45525.1p  transcript_id AT3G45525.1  protein_id AT3G45525.1p  transcript_id AT3G45525.1  
At3g45530	chr3:016701341	0.0	C/16701341-16703335,16701133-16701216	AT3G45530.1  CDS  go_process intracellular signaling cascade|GO:0007242||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular signaling cascade; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Zinc finger, PHD-type (InterPro:IPR001965), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT3G27473.1); Has 1427 Blast hits to 498 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 0; Plants - 1403; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G45530.1p  transcript_id AT3G45530.1  protein_id AT3G45530.1p  transcript_id AT3G45530.1  
At3g45540	chr3:016707566	0.0	C/16707566-16707649,16706596-16707359,16706312-16706510	AT3G45540.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G26130.1); Has 2227 Blast hits to 2209 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 1108; Fungi - 354; Plants - 376; Viruses - 0; Other Eukaryotes - 389 (source: NCBI BLink).  protein_id AT3G45540.1p  transcript_id AT3G45540.1  protein_id AT3G45540.1p  transcript_id AT3G45540.1  
At3g45550	chr3:016709445	0.0	C/16709445-16712000	AT3G45550.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 8.1e-36 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)  
At3g45555	chr3:016712368	0.0	C/16712368-16713009	AT3G45555.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G45580.1); Has 1936 Blast hits to 1920 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 1022; Fungi - 288; Plants - 322; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink).  protein_id AT3G45555.1p  transcript_id AT3G45555.1  protein_id AT3G45555.1p  transcript_id AT3G45555.1  
At3g45560	chr3:016722408	0.0	C/16722408-16722674,16721577-16722162,16721280-16721368,16720364-16720591,16720153-16720293,16719630-16719830	AT3G45560.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G45580.1); Has 339 Blast hits to 289 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 56; Fungi - 26; Plants - 221; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT3G45560.1p  transcript_id AT3G45560.1  protein_id AT3G45560.1p  transcript_id AT3G45560.1  
At3g45570	chr3:016725826	0.0	C/16725826-16726116,16725094-16725741	AT3G45570.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G45580.1); Has 1043 Blast hits to 1033 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 477; Fungi - 140; Plants - 262; Viruses - 2; Other Eukaryotes - 162 (source: NCBI BLink).  protein_id AT3G45570.1p  transcript_id AT3G45570.1  protein_id AT3G45570.1p  transcript_id AT3G45570.1  
At3g45577	chr3:016728910	0.0	W/16728910-16729266	AT3G45577.1  CDS  go_component tRNA-intron endonuclease complex|GO:0000214||IEA  go_process tRNA splicing, via endonucleolytic cleavage and ligation|GO:0006388||IEA  go_function tRNA-intron endonuclease activity|GO:0000213||IEA  product tRNA-intron endonuclease  note tRNA-intron endonuclease; FUNCTIONS IN: tRNA-intron endonuclease activity; INVOLVED IN: tRNA splicing, via endonucleolytic cleavage and ligation; LOCATED IN: tRNA-intron endonuclease complex; CONTAINS InterPro DOMAIN/s: tRNA intron endonuclease, N-terminal domain-like (InterPro:IPR006678); BEST Arabidopsis thaliana protein match is: ATSEN1 (SPLICING ENDONUCLEASE 1); nuclease/ nucleic acid binding / tRNA-intron endonuclease (TAIR:AT3G45590.2); Has 82 Blast hits to 82 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G45577.1p  transcript_id AT3G45577.1  protein_id AT3G45577.1p  transcript_id AT3G45577.1  
At3g45580	chr3:016731188	0.0	C/16731188-16731511,16730356-16731098,16730139-16730236,16729989-16730050	AT3G45580.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G45570.1); Has 2218 Blast hits to 2200 proteins in 156 species: Archae - 0; Bacteria - 2; Metazoa - 1093; Fungi - 386; Plants - 370; Viruses - 1; Other Eukaryotes - 366 (source: NCBI BLink).  protein_id AT3G45580.1p  transcript_id AT3G45580.1  protein_id AT3G45580.1p  transcript_id AT3G45580.1  
At3g45590	chr3:016733062	0.0	W/16733062-16733775	AT3G45590.1  CDS  gene_syn ATSEN1, SPLICING ENDONUCLEASE 1  gene ATSEN1  function Encodes a catalytic subunit of tRNA splicing endonuclease.  go_component tRNA-intron endonuclease complex|GO:0000214||IEA  go_process tRNA splicing, via endonucleolytic cleavage and ligation|GO:0006388||IEA  go_function tRNA-intron endonuclease activity|GO:0000213||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function nuclease activity|GO:0004518||IEA  go_component tRNA-intron endonuclease complex|GO:0000214||ISS  go_process tRNA splicing, via endonucleolytic cleavage and ligation|GO:0006388||ISS  go_function tRNA-intron endonuclease activity|GO:0000213||ISS  product ATSEN1 (SPLICING ENDONUCLEASE 1); nuclease/ nucleic acid binding / tRNA-intron endonuclease  note SPLICING ENDONUCLEASE 1 (ATSEN1); FUNCTIONS IN: tRNA-intron endonuclease activity, nucleic acid binding, nuclease activity; INVOLVED IN: tRNA splicing, via endonucleolytic cleavage and ligation; LOCATED IN: tRNA-intron endonuclease complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA-intron endonuclease (InterPro:IPR006676), tRNA intron endonuclease, catalytic domain-like (InterPro:IPR006677), tRNA intron endonuclease, N-terminal domain-like (InterPro:IPR006678), Endonuclease TnsA, N-terminal/resolvase Hjc/tRNA endonuclease, C-terminal (InterPro:IPR011856); BEST Arabidopsis thaliana protein match is: SEN2 (splicing endonuclease 2); nuclease/ tRNA-intron endonuclease (TAIR:AT5G60230.2); Has 345 Blast hits to 345 proteins in 156 species: Archae - 87; Bacteria - 0; Metazoa - 95; Fungi - 92; Plants - 45; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT3G45590.1p  transcript_id AT3G45590.1  protein_id AT3G45590.1p  transcript_id AT3G45590.1  
At3g45590	chr3:016733062	0.0	W/16733062-16733775	AT3G45590.2  CDS  gene_syn ATSEN1, SPLICING ENDONUCLEASE 1  gene ATSEN1  function Encodes a catalytic subunit of tRNA splicing endonuclease.  go_component tRNA-intron endonuclease complex|GO:0000214||IEA  go_process tRNA splicing, via endonucleolytic cleavage and ligation|GO:0006388||IEA  go_function tRNA-intron endonuclease activity|GO:0000213||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function nuclease activity|GO:0004518||IEA  go_component tRNA-intron endonuclease complex|GO:0000214||ISS  go_process tRNA splicing, via endonucleolytic cleavage and ligation|GO:0006388||ISS  go_function tRNA-intron endonuclease activity|GO:0000213||ISS  product ATSEN1 (SPLICING ENDONUCLEASE 1); nuclease/ nucleic acid binding / tRNA-intron endonuclease  note SPLICING ENDONUCLEASE 1 (ATSEN1); FUNCTIONS IN: tRNA-intron endonuclease activity, nuclease activity, nucleic acid binding; INVOLVED IN: tRNA splicing, via endonucleolytic cleavage and ligation; LOCATED IN: tRNA-intron endonuclease complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA intron endonuclease, catalytic domain-like (InterPro:IPR006677), tRNA-intron endonuclease (InterPro:IPR006676), tRNA intron endonuclease, N-terminal domain-like (InterPro:IPR006678), Endonuclease TnsA, N-terminal/resolvase Hjc/tRNA endonuclease, C-terminal (InterPro:IPR011856); BEST Arabidopsis thaliana protein match is: SEN2 (splicing endonuclease 2); nuclease/ tRNA-intron endonuclease (TAIR:AT5G60230.2); Has 345 Blast hits to 345 proteins in 156 species: Archae - 87; Bacteria - 0; Metazoa - 95; Fungi - 92; Plants - 45; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT3G45590.2p  transcript_id AT3G45590.2  protein_id AT3G45590.2p  transcript_id AT3G45590.2  
At3g45600	chr3:016735342	0.0	C/16735342-16735854,16733973-16734317	AT3G45600.1  CDS  gene_syn TET3, TETRASPANIN3  gene TET3  function Member of TETRASPANIN family  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process aging|GO:0007568||ISS  go_function molecular_function|GO:0003674||ND  product TET3 (TETRASPANIN3)  note TETRASPANIN3 (TET3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499), Tetraspanin, subgroup (InterPro:IPR000301); BEST Arabidopsis thaliana protein match is: TET4 (TETRASPANIN4) (TAIR:AT5G60220.1); Has 402 Blast hits to 402 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 181; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G45600.1p  transcript_id AT3G45600.1  protein_id AT3G45600.1p  transcript_id AT3G45600.1  
At3g45610	chr3:016740329	0.0	C/16740329-16740352,16739530-16740243	AT3G45610.1  CDS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product Dof-type zinc finger domain-containing protein  note Dof-type zinc finger domain-containing protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT5G60200.1); Has 622 Blast hits to 618 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 613; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G45610.1p  transcript_id AT3G45610.1  protein_id AT3G45610.1p  transcript_id AT3G45610.1  
At3g45620	chr3:016745918	0.0	W/16745918-16746034,16746405-16746656,16746753-16746896,16746979-16747683,16747766-16747993	AT3G45620.1  CDS  function This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|IPI  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  go_function protein binding|GO:0005515|18223036|IPI  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT4G35140.1); Has 10404 Blast hits to 7235 proteins in 384 species: Archae - 16; Bacteria - 2165; Metazoa - 3910; Fungi - 2095; Plants - 739; Viruses - 0; Other Eukaryotes - 1479 (source: NCBI BLink).  protein_id AT3G45620.1p  transcript_id AT3G45620.1  protein_id AT3G45620.1p  transcript_id AT3G45620.1  
At3g45630	chr3:016753098	0.0	C/16753098-16753190,16752766-16752893,16752525-16752675,16752325-16752434,16752122-16752205,16751987-16752035,16751771-16751862,16751497-16751623,16751098-16751177,16749662-16751016,16749427-16749537,16748751-16749340	AT3G45630.1  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: protein binding, RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA binding / nucleic acid binding / nucleotide binding / protein binding / zinc ion binding (TAIR:AT5G60170.1); Has 1885 Blast hits to 933 proteins in 202 species: Archae - 0; Bacteria - 444; Metazoa - 427; Fungi - 276; Plants - 89; Viruses - 2; Other Eukaryotes - 647 (source: NCBI BLink).  protein_id AT3G45630.1p  transcript_id AT3G45630.1  protein_id AT3G45630.1p  transcript_id AT3G45630.1  
At3g45638	chr3:016755215	0.0	C/16755215-16756263	AT3G45638.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G45638.1  
At3g45638	chr3:016755470	0.0	C/16755470-16756290	AT3G45638.2  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G45638.2  
At3g45640	chr3:016756918	0.0	W/16756918-16757075,16757159-16757288,16757377-16757514,16757616-16757948,16758041-16758224,16758307-16758476	AT3G45640.1  CDS  gene_syn ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3, ATMPK3, MITOGEN-ACTIVATED PROTEIN KINASE 3, MPK3, T6D9.4  gene ATMPK3  function Encodes a mitogen-activated kinase whose mRNA levels increase in response to touch, cold, salinity stress and chitin oligomers.Also functions in ovule development. Heterozygous MPK3 mutants in a homozygous MPK6 background are female sterile due to defects in integument development. MPK3 can be dephosphorylated by MKP2 in vitro.  go_process activation of MAPK activity involved in osmosensory signaling pathway|GO:0000169|12220631|IDA  go_process response to stress|GO:0006950|12119167|TAS  go_process response to osmotic stress|GO:0006970|12220631|IDA  go_process response to oxidative stress|GO:0006979|10717008|IEP  go_process response to oxidative stress|GO:0006979|12119167|TAS  go_process signal transduction|GO:0007165|12119167|IC  go_process response to cold|GO:0009409|8570631|IEP  go_process response to wounding|GO:0009611|17953483|IEP  go_process response to bacterium|GO:0009617|19318610|IEP  go_process abscisic acid mediated signaling|GO:0009738|12434021|TAS  go_process camalexin biosynthetic process|GO:0010120|18378893|IMP  go_process response to chitin|GO:0010200|15923325|IEP  go_process stomatal complex development|GO:0010374|17259259|IGI  go_process stomatal complex patterning|GO:0010375|17259259|IGI  go_process ovule development|GO:0048481|18364464|IGI  go_process priming of cellular response to stress|GO:0080136|19318610|IMP  go_function protein kinase activity|GO:0004672|12434021|TAS  go_function MAP kinase activity|GO:0004707|12119167|ISS  go_function protein binding|GO:0005515|12506203|IPI  go_function kinase activity|GO:0016301||ISS  product ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3); MAP kinase/ kinase/ protein binding / protein kinase  note ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3 (ATMPK3); FUNCTIONS IN: protein binding, MAP kinase activity, protein kinase activity, kinase activity; INVOLVED IN: in 15 processes; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6); MAP kinase/ kinase (TAIR:AT2G43790.1); Has 90908 Blast hits to 89800 proteins in 3238 species: Archae - 47; Bacteria - 7261; Metazoa - 40202; Fungi - 8268; Plants - 17249; Viruses - 438; Other Eukaryotes - 17443 (source: NCBI BLink).  protein_id AT3G45640.1p  transcript_id AT3G45640.1  protein_id AT3G45640.1p  transcript_id AT3G45640.1  
At3g45650	chr3:016759253	0.0	W/16759253-16759352,16759453-16759670,16759754-16760271,16760348-16760868,16760947-16761266	AT3G45650.1  CDS  gene_syn NAXT1, NITRATE EXCRETION TRANSPORTER1  gene NAXT1  function Encodes a nitrate efflux transporter NAXT1 (for NITRATE EXCRETION TRANSPORTER1). Localized to the plasma membrane. NAXT1 belongs to a subclass of seven NAXT members from the large NITRATE TRANSPORTER1/PEPTIDE TRANSPORTER family and is mainly expressed in the cortex of mature roots.  go_component plasma membrane|GO:0005886|17993627|IDA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_process response to acidity|GO:0010447|17993627|IMP  go_process nitrate transport|GO:0015706|17993627|IMP  go_function transporter activity|GO:0005215||ISS  go_function nitrate efflux transmembrane transporter activity|GO:0010542|17993627|IMP  product NAXT1 (NITRATE EXCRETION TRANSPORTER1); nitrate efflux transmembrane transporter/ transporter  note NITRATE EXCRETION TRANSPORTER1 (NAXT1); FUNCTIONS IN: transporter activity, nitrate efflux transmembrane transporter activity; INVOLVED IN: oligopeptide transport, nitrate transport, response to acidity; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: root cortex; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT3G45660.1); Has 1875 Blast hits to 1849 proteins in 285 species: Archae - 0; Bacteria - 196; Metazoa - 397; Fungi - 182; Plants - 1076; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT3G45650.1p  transcript_id AT3G45650.1  protein_id AT3G45650.1p  transcript_id AT3G45650.1  
At3g45660	chr3:016762205	0.0	W/16762205-16762301,16762399-16762616,16762709-16763226,16763316-16763836,16763922-16764241	AT3G45660.1  CDS  gene_syn T6D9.2  go_component membrane|GO:0016020||IEA  go_process oligopeptide transport|GO:0006857||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: NAXT1 (NITRATE EXCRETION TRANSPORTER1); nitrate efflux transmembrane transporter/ transporter (TAIR:AT3G45650.1); Has 2634 Blast hits to 2603 proteins in 469 species: Archae - 0; Bacteria - 703; Metazoa - 416; Fungi - 205; Plants - 1077; Viruses - 0; Other Eukaryotes - 233 (source: NCBI BLink).  protein_id AT3G45660.1p  transcript_id AT3G45660.1  protein_id AT3G45660.1p  transcript_id AT3G45660.1  
At3g45670	chr3:016765320	0.0	W/16765320-16766459	AT3G45670.1  CDS  gene_syn T6D9.3  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase-related  note protein kinase-related; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase-related (TAIR:AT3G46140.1); Has 78951 Blast hits to 78263 proteins in 2854 species: Archae - 45; Bacteria - 7059; Metazoa - 33745; Fungi - 7032; Plants - 16215; Viruses - 439; Other Eukaryotes - 14416 (source: NCBI BLink).  protein_id AT3G45670.1p  transcript_id AT3G45670.1  protein_id AT3G45670.1p  transcript_id AT3G45670.1  
At3g45673	chr3:016768075	0.0	C/16768075-16768257	AT3G45673.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G45673.1p  transcript_id AT3G45673.1  protein_id AT3G45673.1p  transcript_id AT3G45673.1  
At3g45680	chr3:016770995	0.0	W/16770995-16771088,16771170-16771387,16771469-16772010,16772086-16772908	AT3G45680.1  CDS  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_process response to nematode|GO:0009624|16478044|IEP  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport, response to nematode; LOCATED IN: membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region, conserved site (InterPro:IPR018456), TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT3G45710.1); Has 2367 Blast hits to 2314 proteins in 371 species: Archae - 0; Bacteria - 529; Metazoa - 412; Fungi - 151; Plants - 1093; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink).  protein_id AT3G45680.1p  transcript_id AT3G45680.1  protein_id AT3G45680.1p  transcript_id AT3G45680.1  
At3g45690	chr3:016776268	0.0	W/16776268-16776355,16776448-16776665,16776738-16777276,16777350-16777803,16777899-16778150	AT3G45690.1  CDS  go_component membrane|GO:0016020||IEA  go_process oligopeptide transport|GO:0006857||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region, conserved site (InterPro:IPR018456), TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT3G45680.1); Has 2451 Blast hits to 2431 proteins in 367 species: Archae - 0; Bacteria - 678; Metazoa - 380; Fungi - 122; Plants - 1067; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink).  protein_id AT3G45690.1p  transcript_id AT3G45690.1  protein_id AT3G45690.1p  transcript_id AT3G45690.1  
At3g45700	chr3:016778765	0.0	W/16778765-16778846,16778929-16779146,16779649-16780190,16780264-16781068	AT3G45700.1  CDS  go_component membrane|GO:0016020||IEA  go_process oligopeptide transport|GO:0006857||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region, conserved site (InterPro:IPR018456), TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT3G45710.1); Has 2018 Blast hits to 1979 proteins in 299 species: Archae - 0; Bacteria - 337; Metazoa - 400; Fungi - 91; Plants - 1068; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT3G45700.1p  transcript_id AT3G45700.1  protein_id AT3G45700.1p  transcript_id AT3G45700.1  
At3g45710	chr3:016782719	0.0	W/16782719-16782815,16782889-16783106,16783182-16783723,16783792-16784617	AT3G45710.1  CDS  go_component membrane|GO:0016020||IEA  go_process oligopeptide transport|GO:0006857||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region, conserved site (InterPro:IPR018456), TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT3G45700.1); Has 2261 Blast hits to 2209 proteins in 358 species: Archae - 2; Bacteria - 435; Metazoa - 410; Fungi - 126; Plants - 1083; Viruses - 0; Other Eukaryotes - 205 (source: NCBI BLink).  protein_id AT3G45710.1p  transcript_id AT3G45710.1  protein_id AT3G45710.1p  transcript_id AT3G45710.1  
At3g45720	chr3:016785046	0.0	W/16785046-16785136,16785223-16785440,16785519-16786057,16786126-16786945	AT3G45720.1  CDS  go_component membrane|GO:0016020||IEA  go_process oligopeptide transport|GO:0006857||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT3G45680.1); Has 2649 Blast hits to 2599 proteins in 424 species: Archae - 2; Bacteria - 787; Metazoa - 404; Fungi - 138; Plants - 1080; Viruses - 0; Other Eukaryotes - 238 (source: NCBI BLink).  protein_id AT3G45720.1p  transcript_id AT3G45720.1  protein_id AT3G45720.1p  transcript_id AT3G45720.1  
At3g45730	chr3:016790072	0.0	W/16790072-16790290	AT3G45730.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G45730.1p  transcript_id AT3G45730.1  protein_id AT3G45730.1p  transcript_id AT3G45730.1  
At3g45740	chr3:016790830	0.0	W/16790830-16790936,16791031-16791134,16791279-16791314,16791398-16791471,16791607-16791647,16791757-16791828,16791926-16792112,16792392-16792487,16792567-16792634,16792736-16792922,16793031-16793114,16793206-16793280	AT3G45740.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process metabolic process|GO:0008152||IEA  go_function hydrolase activity|GO:0016787||IEA  product hydrolase family protein / HAD-superfamily protein  note hydrolase family protein / HAD-superfamily protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIA, CECR5 (InterPro:IPR006353), HAD-superfamily hydrolase, subfamily IIA (InterPro:IPR006357); Has 367 Blast hits to 355 proteins in 105 species: Archae - 5; Bacteria - 2; Metazoa - 102; Fungi - 197; Plants - 14; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT3G45740.1p  transcript_id AT3G45740.1  protein_id AT3G45740.1p  transcript_id AT3G45740.1  
At3g45750	chr3:016797332	0.0	C/16797332-16797380,16797048-16797236,16796784-16796963,16796438-16796622,16795956-16796051,16795597-16795642,16795237-16795343,16795037-16795141,16793855-16794946	AT3G45750.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G45760.1); Has 1149 Blast hits to 1070 proteins in 154 species: Archae - 0; Bacteria - 1; Metazoa - 699; Fungi - 196; Plants - 80; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).  protein_id AT3G45750.1p  transcript_id AT3G45750.1  protein_id AT3G45750.1p  transcript_id AT3G45750.1  
At3g45755	chr3:016799249	0.0	W/16799249-16800514	AT3G45755.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G09510.1); similar to 80C09_29 [Brassica rapa subsp. pekinensis] (GB:AAZ41840.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446)  
At3g45760	chr3:016804711	0.0	C/16804711-16804759,16804420-16804608,16804151-16804330,16803808-16803992,16803599-16803694,16803298-16803343,16803062-16803168,16802341-16802780,16801996-16802128	AT3G45760.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G45750.1); Has 369 Blast hits to 363 proteins in 105 species: Archae - 0; Bacteria - 1; Metazoa - 179; Fungi - 80; Plants - 61; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT3G45760.1p  transcript_id AT3G45760.1  protein_id AT3G45760.1p  transcript_id AT3G45760.1  
At3g45770	chr3:016807415	0.0	C/16807415-16807460,16807148-16807279,16806889-16807032,16806708-16806810,16806513-16806612,16806364-16806440,16806201-16806279,16805926-16806044,16805753-16805846	AT3G45770.2  CDS  gene_syn F16L2.2  go_component mitochondrion|GO:0005739|17137349|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function zinc ion binding|GO:0008270||ISS  product oxidoreductase, zinc-binding dehydrogenase family protein  note oxidoreductase, zinc-binding dehydrogenase family protein; FUNCTIONS IN: zinc ion binding, ATP binding; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: NQR; binding / catalytic/ oxidoreductase/ zinc ion binding (TAIR:AT1G49670.1); Has 11801 Blast hits to 11757 proteins in 1177 species: Archae - 97; Bacteria - 6500; Metazoa - 687; Fungi - 1092; Plants - 320; Viruses - 0; Other Eukaryotes - 3105 (source: NCBI BLink).  protein_id AT3G45770.2p  transcript_id AT3G45770.2  protein_id AT3G45770.2p  transcript_id AT3G45770.2  
At3g45770	chr3:016807593	0.0	C/16807593-16807774,16807415-16807512,16807148-16807279,16806889-16807032,16806708-16806810,16806513-16806612,16806364-16806440,16806201-16806279,16805926-16806044,16805753-16805846	AT3G45770.1  CDS  gene_syn F16L2.2  go_component nucleus|GO:0005634|14617066|IDA  go_component mitochondrion|GO:0005739|17137349|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function zinc ion binding|GO:0008270||ISS  product oxidoreductase, zinc-binding dehydrogenase family protein  note oxidoreductase, zinc-binding dehydrogenase family protein; FUNCTIONS IN: zinc ion binding, ATP binding; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: mitochondrion, chloroplast, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: NQR; binding / catalytic/ oxidoreductase/ zinc ion binding (TAIR:AT1G49670.1); Has 15702 Blast hits to 15648 proteins in 1321 species: Archae - 139; Bacteria - 8514; Metazoa - 1237; Fungi - 1345; Plants - 386; Viruses - 0; Other Eukaryotes - 4081 (source: NCBI BLink).  protein_id AT3G45770.1p  transcript_id AT3G45770.1  protein_id AT3G45770.1p  transcript_id AT3G45770.1  
At3g45775	chr3:016809432	0.0	C/16809432-16813871	AT3G45775.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 9.5e-189 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)  
At3g45780	chr3:016818557	0.0	W/16818557-16819257,16819797-16819979,16820253-16820344,16820440-16820707,16820803-16821025,16821123-16821193,16821282-16821388,16821472-16821521,16821645-16821749,16821833-16821892,16821989-16822155,16822249-16822333,16822420-16822500,16822605-16822708,16822792-16822841,16822942-16823048,16823146-16823274,16823362-16823526,16823615-16823755,16823859-16823960	AT3G45780.1  CDS  gene_syn F16L2.3, JK224, NONPHOTOTROPIC HYPOCOTYL 1, NPH1, PHOT1, PHOTOTROPIN, PHOTOTROPIN 1, ROOT PHOTOTROPISM 1, RPT1  gene PHOT1  function Blue-light photoreceptor. Contains a light activated serine-threonine kinase domain and LOV1 and LOV2 repeats. Mutants are defective in blue-light response. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT1 undergoes blue-light-dependent autophosphorylation. At least eight phosphorylation sites have been identified in PHOT1. Phosphorylation of serine851 in the activation loop of PHOT1 appears to be required for stomatal opening, chloroplast accumulation, leaf flattening, and phototropism, and phosphorylation of serine849 may also contribute to the regulation of these responses. Phosphorylation-dependent binding of 14-3-3 proteins to the Hinge1 region of PHOT1 appears to require serine350 and serine376.  go_component vacuole|GO:0005773|15539469|IDA  go_component cytoplasm|GO:0005737|12172018|IDA  go_component internal side of plasma membrane|GO:0009898|12172018|IDA  go_process response to blue light|GO:0009637|15749755|IGI  go_process phototropism|GO:0009638|9405347|IMP  go_process chloroplast avoidance movement|GO:0009903|11371609|IMP  go_process chloroplast accumulation movement|GO:0009904|11371609|IMP  go_process regulation of stomatal movement|GO:0010119|11740564|IMP  go_process regulation of proton transport|GO:0010155|15821287|IGI  go_process negative regulation of anion channel activity by blue light|GO:0010362|17319842|IMP  go_process protein amino acid autophosphorylation|GO:0046777|12383086|TAS  go_process protein amino acid autophosphorylation|GO:0046777|18378899|IDA  go_function protein serine/threonine kinase activity|GO:0004674|9831559|IDA  go_function protein binding|GO:0005515|16777956|IPI  go_function blue light photoreceptor activity|GO:0009882|9831559|IDA  go_function FMN binding|GO:0010181|16150710|TAS  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product PHOT1 (PHOTOTROPIN 1); FMN binding / blue light photoreceptor/ kinase/ protein binding / protein serine/threonine kinase  note PHOTOTROPIN 1 (PHOT1); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, FMN binding, kinase activity, blue light photoreceptor activity; INVOLVED IN: in 8 processes; LOCATED IN: internal side of plasma membrane, vacuole, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), PAS-associated, C-terminal (InterPro:IPR000700), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: PHOT2 (PHOTOTROPIN 2); FMN binding / blue light photoreceptor/ kinase/ protein serine/threonine kinase (TAIR:AT5G58140.2); Has 82421 Blast hits to 79238 proteins in 2147 species: Archae - 161; Bacteria - 11281; Metazoa - 34874; Fungi - 8201; Plants - 11663; Viruses - 407; Other Eukaryotes - 15834 (source: NCBI BLink).  protein_id AT3G45780.1p  transcript_id AT3G45780.1  protein_id AT3G45780.1p  transcript_id AT3G45780.1  
At3g45780	chr3:016818557	0.0	W/16818557-16819257,16819797-16819979,16820253-16820344,16820440-16820707,16820803-16821025,16821123-16821193,16821282-16821388,16821472-16821521,16821645-16821749,16821833-16821892,16821989-16822155,16822249-16822333,16822420-16822500,16822605-16822708,16822792-16822841,16822942-16823048,16823146-16823274,16823362-16823526,16823615-16823755,16823859-16823960	AT3G45780.2  CDS  gene_syn F16L2.3, JK224, NONPHOTOTROPIC HYPOCOTYL 1, NPH1, PHOT1, PHOTOTROPIN, PHOTOTROPIN 1, ROOT PHOTOTROPISM 1, RPT1  gene PHOT1  function Blue-light photoreceptor. Contains a light activated serine-threonine kinase domain and LOV1 and LOV2 repeats. Mutants are defective in blue-light response. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT1 undergoes blue-light-dependent autophosphorylation. At least eight phosphorylation sites have been identified in PHOT1. Phosphorylation of serine851 in the activation loop of PHOT1 appears to be required for stomatal opening, chloroplast accumulation, leaf flattening, and phototropism, and phosphorylation of serine849 may also contribute to the regulation of these responses. Phosphorylation-dependent binding of 14-3-3 proteins to the Hinge1 region of PHOT1 appears to require serine350 and serine376.  go_component vacuole|GO:0005773|15539469|IDA  go_component cytoplasm|GO:0005737|12172018|IDA  go_component internal side of plasma membrane|GO:0009898|12172018|IDA  go_process response to blue light|GO:0009637|15749755|IGI  go_process phototropism|GO:0009638|9405347|IMP  go_process chloroplast avoidance movement|GO:0009903|11371609|IMP  go_process chloroplast accumulation movement|GO:0009904|11371609|IMP  go_process regulation of stomatal movement|GO:0010119|11740564|IMP  go_process regulation of proton transport|GO:0010155|15821287|IGI  go_process negative regulation of anion channel activity by blue light|GO:0010362|17319842|IMP  go_process protein amino acid autophosphorylation|GO:0046777|12383086|TAS  go_process protein amino acid autophosphorylation|GO:0046777|18378899|IDA  go_function protein serine/threonine kinase activity|GO:0004674|9831559|IDA  go_function protein binding|GO:0005515|16777956|IPI  go_function blue light photoreceptor activity|GO:0009882|9831559|IDA  go_function FMN binding|GO:0010181|16150710|TAS  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product PHOT1 (PHOTOTROPIN 1); FMN binding / blue light photoreceptor/ kinase/ protein binding / protein serine/threonine kinase  note PHOTOTROPIN 1 (PHOT1); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, FMN binding, kinase activity, blue light photoreceptor activity; INVOLVED IN: in 8 processes; LOCATED IN: internal side of plasma membrane, vacuole, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), PAS-associated, C-terminal (InterPro:IPR000700), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: PHOT2 (PHOTOTROPIN 2); FMN binding / blue light photoreceptor/ kinase/ protein serine/threonine kinase (TAIR:AT5G58140.2); Has 82421 Blast hits to 79238 proteins in 2147 species: Archae - 161; Bacteria - 11281; Metazoa - 34874; Fungi - 8201; Plants - 11663; Viruses - 407; Other Eukaryotes - 15834 (source: NCBI BLink).  protein_id AT3G45780.2p  transcript_id AT3G45780.2  protein_id AT3G45780.2p  transcript_id AT3G45780.2  
At3g45790	chr3:016825153	0.0	C/16825153-16826222,16825005-16825065	AT3G45790.1  CDS  gene_syn F16L2.1  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase-related  note protein kinase-related; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase-related (TAIR:AT3G46140.1); Has 87573 Blast hits to 86760 proteins in 3009 species: Archae - 69; Bacteria - 7529; Metazoa - 38159; Fungi - 7887; Plants - 17402; Viruses - 581; Other Eukaryotes - 15946 (source: NCBI BLink).  protein_id AT3G45790.1p  transcript_id AT3G45790.1  protein_id AT3G45790.1p  transcript_id AT3G45790.1  
At3g45800	chr3:016831836	0.0	C/16831836-16832207,16831622-16831727,16831487-16831543,16831387-16831434,16831222-16831287,16831066-16831134,16830891-16830971,16830657-16830734,16830435-16830566,16830268-16830339,16829482-16830173	AT3G45800.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G11620.1); Has 126 Blast hits to 123 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 116; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT3G45800.1p  transcript_id AT3G45800.1  protein_id AT3G45800.1p  transcript_id AT3G45800.1  
At3g45810	chr3:016837086	0.0	C/16837086-16837569,16836776-16836938,16836536-16836698,16835475-16836281,16835265-16835360,16835001-16835116,16834804-16834906,16834592-16834695,16834340-16834499,16834009-16834233,16833603-16833731,16833409-16833487,16832883-16832992	AT3G45810.1  CDS  go_component membrane|GO:0016020|17432890|IDA  go_process oxidation reduction|GO:0055114||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function iron ion binding|GO:0005506||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor|GO:0050664||IEA  go_function superoxide-generating NADPH oxidase activity|GO:0016175||ISS  product ferric reductase-like transmembrane component family protein  note ferric reductase-like transmembrane component family protein; FUNCTIONS IN: in 8 functions; INVOLVED IN: oxidation reduction; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, flower, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-HAND 1 (InterPro:IPR018247), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), NADPH oxidase Respiratory burst (InterPro:IPR013623), Ferric reductase, NAD binding (InterPro:IPR013121), EF-HAND 2 (InterPro:IPR018249), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: FAD binding / calcium ion binding / electron carrier/ iron ion binding / oxidoreductase/ oxidoreductase, acting on NADH or NADPH, with oxygen as acceptor / peroxidase/ superoxide-generating NADPH oxidase (TAIR:AT5G60010.1); Has 1283 Blast hits to 1181 proteins in 204 species: Archae - 2; Bacteria - 109; Metazoa - 597; Fungi - 177; Plants - 272; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink).  protein_id AT3G45810.1p  transcript_id AT3G45810.1  protein_id AT3G45810.1p  transcript_id AT3G45810.1  
At3g45820	chr3:016840952	0.0	C/16840952-16840983,16840836-16840893,16840163-16840351,16840030-16840089	AT3G45820.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G45820.1p  transcript_id AT3G45820.1  protein_id AT3G45820.1p  transcript_id AT3G45820.1  
At3g45830	chr3:016841277	0.0	W/16841277-16845173	AT3G45830.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02290.1); Has 400 Blast hits to 350 proteins in 75 species: Archae - 0; Bacteria - 2; Metazoa - 199; Fungi - 10; Plants - 60; Viruses - 2; Other Eukaryotes - 127 (source: NCBI BLink).  protein_id AT3G45830.1p  transcript_id AT3G45830.1  protein_id AT3G45830.1p  transcript_id AT3G45830.1  
At3g45840	chr3:016849189	0.0	C/16849189-16849887,16849027-16849097,16847930-16848935	AT3G45840.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein / UV-B light-insensitive protein, putative (TAIR:AT5G59940.1); Has 976 Blast hits to 478 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 975; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G45840.1p  transcript_id AT3G45840.1  protein_id AT3G45840.1p  transcript_id AT3G45840.1  
At3g45850	chr3:016860784	0.0	C/16860784-16860950,16860569-16860698,16860326-16860481,16859756-16860232,16859564-16859661,16859296-16859452,16859147-16859216,16859002-16859078,16858849-16858902,16858690-16858770,16858470-16858581,16858291-16858377,16858038-16858213,16857774-16857935,16857508-16857615,16857273-16857431,16857105-16857188,16856817-16857022,16856609-16856710,16856417-16856526,16856182-16856333,16855814-16856065	AT3G45850.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product kinesin motor protein-related  note kinesin motor protein-related; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin motor protein-related (TAIR:AT2G28620.1); Has 51195 Blast hits to 33804 proteins in 1398 species: Archae - 511; Bacteria - 4991; Metazoa - 25409; Fungi - 4042; Plants - 2382; Viruses - 131; Other Eukaryotes - 13729 (source: NCBI BLink).  protein_id AT3G45850.1p  transcript_id AT3G45850.1  protein_id AT3G45850.1p  transcript_id AT3G45850.1  
At3g45851	chr3:016861431	0.0	W/16861431-16861535	AT3G45851.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G45851.1p  transcript_id AT3G45851.1  protein_id AT3G45851.1p  transcript_id AT3G45851.1  
At3g45860	chr3:016865198	0.0	C/16865198-16866041,16864973-16865107,16864769-16864890,16864385-16864595,16864057-16864294,16863824-16863980,16863401-16863724	AT3G45860.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952|11135117|TAS  go_function kinase activity|GO:0016301||ISS  product receptor-like protein kinase, putative  note receptor-like protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G23270.1); Has 86309 Blast hits to 85382 proteins in 3207 species: Archae - 45; Bacteria - 7570; Metazoa - 38145; Fungi - 6647; Plants - 19006; Viruses - 355; Other Eukaryotes - 14541 (source: NCBI BLink).  protein_id AT3G45860.1p  transcript_id AT3G45860.1  protein_id AT3G45860.1p  transcript_id AT3G45860.1  
At3g45870	chr3:016867246	0.0	W/16867246-16867499,16867577-16867693,16867779-16868052,16868147-16868302,16868382-16868533,16868634-16868838	AT3G45870.1  CDS  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  product integral membrane family protein / nodulin MtN21-related  note integral membrane family protein / nodulin MtN21-related; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT4G19185.1); Has 2381 Blast hits to 2369 proteins in 430 species: Archae - 23; Bacteria - 1346; Metazoa - 6; Fungi - 3; Plants - 624; Viruses - 0; Other Eukaryotes - 379 (source: NCBI BLink).  protein_id AT3G45870.1p  transcript_id AT3G45870.1  protein_id AT3G45870.1p  transcript_id AT3G45870.1  
At3g45870	chr3:016867633	0.0	W/16867633-16867693,16867784-16868052,16868147-16868302,16868382-16868533,16868634-16868838	AT3G45870.2  CDS  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  product integral membrane family protein / nodulin MtN21-related  note integral membrane family protein / nodulin MtN21-related; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT4G19185.1); Has 1064 Blast hits to 1059 proteins in 168 species: Archae - 11; Bacteria - 392; Metazoa - 6; Fungi - 3; Plants - 596; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT3G45870.2p  transcript_id AT3G45870.2  protein_id AT3G45870.2p  transcript_id AT3G45870.2  
At3g45880	chr3:016870897	0.0	C/16870897-16871544,16870633-16870808,16870366-16870436,16870129-16870259,16869855-16869866	AT3G45880.1  CDS  go_process phospholipid biosynthetic process|GO:0008654||IEA  go_component cellular_component|GO:0005575||ND  product unknown protein  note INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, root, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347); BEST Arabidopsis thaliana protein match is: transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT5G19840.1); Has 836 Blast hits to 833 proteins in 185 species: Archae - 0; Bacteria - 185; Metazoa - 390; Fungi - 96; Plants - 69; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT3G45880.1p  transcript_id AT3G45880.1  protein_id AT3G45880.1p  transcript_id AT3G45880.1  
At3g45890	chr3:016871697	0.0	W/16871697-16872398,16872472-16872747,16872849-16872905,16873015-16873213,16873293-16873408,16873544-16873720,16873801-16874100	AT3G45890.1  CDS  gene_syn ROOT UVB SENSITIVE 1, RUS1  gene RUS1  function Encodes RUS1 (root UVB sensitive 1), a protein that contains DUF647 (domain of unknown function 647), a domain highly conserved in eukaryotes. The primary root of rus1 is hypersensitive to very low-fluence-rate (VLF) UVB.  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process response to UV-B|GO:0010224|19075229|IMP  go_process developmental process|GO:0032502|19075229|IMP  product RUS1 (ROOT UVB SENSITIVE 1)  note ROOT UVB SENSITIVE 1 (RUS1); INVOLVED IN: response to UV-B, developmental process; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF647 (InterPro:IPR006968); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13770.1); Has 291 Blast hits to 291 proteins in 93 species: Archae - 0; Bacteria - 2; Metazoa - 100; Fungi - 41; Plants - 105; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT3G45890.1p  transcript_id AT3G45890.1  protein_id AT3G45890.1p  transcript_id AT3G45890.1  
At3g45900	chr3:016875418	0.0	C/16875418-16875984,16875282-16875337,16875002-16875197,16874566-16874916	AT3G45900.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G53020.1); Has 840 Blast hits to 789 proteins in 137 species: Archae - 20; Bacteria - 38; Metazoa - 468; Fungi - 43; Plants - 57; Viruses - 0; Other Eukaryotes - 214 (source: NCBI BLink).  protein_id AT3G45900.1p  transcript_id AT3G45900.1  protein_id AT3G45900.1p  transcript_id AT3G45900.1  
At3g45910	chr3:016876882	0.0	C/16876882-16877075,16876338-16876746	AT3G45910.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G45910.1p  transcript_id AT3G45910.1  protein_id AT3G45910.1p  transcript_id AT3G45910.1  
At3g45920	chr3:016882182	0.0	W/16882182-16882339,16882451-16882871	AT3G45920.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  product receptor protein kinase-related  note receptor protein kinase-related; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: MEE39 (maternal effect embryo arrest 39); kinase (TAIR:AT3G46330.1); Has 48747 Blast hits to 48515 proteins in 1555 species: Archae - 10; Bacteria - 4473; Metazoa - 19657; Fungi - 3154; Plants - 13971; Viruses - 145; Other Eukaryotes - 7337 (source: NCBI BLink).  protein_id AT3G45920.1p  transcript_id AT3G45920.1  protein_id AT3G45920.1p  transcript_id AT3G45920.1  
At3g45930	chr3:016883390	0.0	W/16883390-16883701	AT3G45930.1  CDS  gene_syn F16L2.140  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product histone H4  note histone H4; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125), Histone H4 (InterPro:IPR001951); BEST Arabidopsis thaliana protein match is: histone H4 (TAIR:AT5G59970.1); Has 2716 Blast hits to 2716 proteins in 361 species: Archae - 0; Bacteria - 0; Metazoa - 1566; Fungi - 282; Plants - 355; Viruses - 6; Other Eukaryotes - 507 (source: NCBI BLink).  protein_id AT3G45930.1p  transcript_id AT3G45930.1  protein_id AT3G45930.1p  transcript_id AT3G45930.1  
At3g45935	chr3:016885891	0.0	W/16885891-16885964	AT3G45935.1  tRNA  gene_syn 67251.TRNA-VAL-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Val (anticodon: AAC)  transcript_id AT3G45935.1  
At3g45940	chr3:016888965	0.0	C/16888965-16889171,16888230-16888893,16887703-16888151,16886744-16887557,16886226-16886698	AT3G45940.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product alpha-xylosidase, putative  note alpha-xylosidase, putative; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, sepal, flower, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 31 (InterPro:IPR000322), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase (TAIR:AT1G68560.1); Has 3128 Blast hits to 2874 proteins in 601 species: Archae - 49; Bacteria - 1425; Metazoa - 679; Fungi - 551; Plants - 142; Viruses - 2; Other Eukaryotes - 280 (source: NCBI BLink).  protein_id AT3G45940.1p  transcript_id AT3G45940.1  protein_id AT3G45940.1p  transcript_id AT3G45940.1  
At3g45950	chr3:016889461	0.0	C/16889461-16890618	AT3G45950.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product splicing factor-related  note splicing factor-related; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: SMP1 (SWELLMAP 1); nucleic acid binding / single-stranded RNA binding (TAIR:AT1G65660.1); Has 291 Blast hits to 289 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 90; Plants - 32; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT3G45950.1p  transcript_id AT3G45950.1  protein_id AT3G45950.1p  transcript_id AT3G45950.1  
At3g45955	chr3:016891639	0.0	W/16891639-16891712	AT3G45955.1  tRNA  gene_syn 67251.TRNA-VAL-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Val (anticodon: AAC)  transcript_id AT3G45955.1  
At3g45960	chr3:016892826	0.0	W/16892826-16892946,16893035-16893329,16893414-16893789	AT3G45960.2  CDS  gene_syn ATEXLA3, ATEXPL3, ATHEXP BETA 2.3, EXPL3, F16L2_170, arabidopsis thaliana expansin-like a3  gene ATEXLA3  function member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)  go_component membrane|GO:0016020|17432890|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process plant-type cell wall organization|GO:0009664||ISS  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  product ATEXLA3 (arabidopsis thaliana expansin-like a3)  note arabidopsis thaliana expansin-like a3 (ATEXLA3); INVOLVED IN: plant-type cell wall organization, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: membrane, plant-type cell wall; EXPRESSED IN: leaf apex, hypocotyl, flower, root, leaf; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: ATEXLA1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A1) (TAIR:AT3G45970.1); Has 1261 Blast hits to 1260 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1253; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT3G45960.2p  transcript_id AT3G45960.2  protein_id AT3G45960.2p  transcript_id AT3G45960.2  
At3g45960	chr3:016893058	0.0	W/16893058-16893329,16893414-16893789	AT3G45960.1  CDS  gene_syn ATEXLA3, ATEXPL3, ATHEXP BETA 2.3, EXPL3, F16L2_170, arabidopsis thaliana expansin-like a3  gene ATEXLA3  function member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)  go_component membrane|GO:0016020|17432890|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process plant-type cell wall organization|GO:0009664||ISS  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  product ATEXLA3 (arabidopsis thaliana expansin-like a3)  note arabidopsis thaliana expansin-like a3 (ATEXLA3); INVOLVED IN: plant-type cell wall organization, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: membrane, plant-type cell wall; EXPRESSED IN: leaf apex, hypocotyl, flower, root, leaf; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: ATEXLA1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A1) (TAIR:AT3G45970.1); Has 1170 Blast hits to 1169 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1164; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G45960.1p  transcript_id AT3G45960.1  protein_id AT3G45960.1p  transcript_id AT3G45960.1  
At3g45965	chr3:016894163	0.0	W/16894163-16894236	AT3G45965.1  tRNA  gene_syn 67251.TRNA-VAL-3  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Val (anticodon: AAC)  transcript_id AT3G45965.1  
At3g45970	chr3:016896238	0.0	W/16896238-16896358,16896435-16896729,16896808-16897189	AT3G45970.1  CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN-LIKE A1, ATEXLA1, ATEXPL1, ATHEXP BETA 2.1, EXPANSIN L1, EXPL1  gene ATEXLA1  function member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)  go_component cell wall|GO:0005618|14595688|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  product ATEXLA1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A1)  note ARABIDOPSIS THALIANA EXPANSIN-LIKE A1 (ATEXLA1); INVOLVED IN: unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: ATEXLA2 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A2) (TAIR:AT4G38400.1); Has 1257 Blast hits to 1256 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1252; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G45970.1p  transcript_id AT3G45970.1  protein_id AT3G45970.1p  transcript_id AT3G45970.1  
At3g45980	chr3:016897492	0.0	C/16897492-16897944	AT3G45980.1  CDS  gene_syn H2B, HISTONE 2B, HISTONE H2B, HTB9  gene HTB9  function Encodes a histone 2B (H2B) protein. This protein can be ubiquitinated in planta, and this modification depends on the HUB1 and HUB2 E3 ubiquitin ligases as well as the UBC1 and UBC2 E2 ubiquitin conjugating enzymes. Lysine 146 appears to be the site of the ubiquitin addition.  go_component nucleolus|GO:0005730|15496452|IDA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product HTB9; DNA binding  note HTB9; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: HTB11; DNA binding (TAIR:AT3G46030.1); Has 3058 Blast hits to 2913 proteins in 297 species: Archae - 0; Bacteria - 65; Metazoa - 1899; Fungi - 176; Plants - 374; Viruses - 0; Other Eukaryotes - 544 (source: NCBI BLink).  protein_id AT3G45980.1p  transcript_id AT3G45980.1  protein_id AT3G45980.1p  transcript_id AT3G45980.1  
At3g45990	chr3:016904010	0.0	C/16904010-16904136,16901019-16901142,16900778-16900928	AT3G45990.1  CDS  go_component intracellular|GO:0005622||IEA  go_function actin binding|GO:0003779||IEA  go_component intracellular|GO:0005622||ISS  go_process biological_process|GO:0008150||ND  product actin-depolymerizing factor, putative  note actin-depolymerizing factor, putative; FUNCTIONS IN: actin binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: stem, sperm cell, embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Actin-binding, cofilin/tropomyosin type (InterPro:IPR002108), ADF/Cofilin/Destrin (InterPro:IPR017904); BEST Arabidopsis thaliana protein match is: ADF2 (ACTIN DEPOLYMERIZING FACTOR 2); actin binding (TAIR:AT3G46000.1); Has 980 Blast hits to 979 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 461; Fungi - 97; Plants - 307; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).  protein_id AT3G45990.1p  transcript_id AT3G45990.1  protein_id AT3G45990.1p  transcript_id AT3G45990.1  
At3g46000	chr3:016908820	0.0	C/16908820-16908822,16907975-16908234,16907743-16907893	AT3G46000.1  CDS  gene_syn ACTIN DEPOLYMERIZING FACTOR 2, ADF2  gene ADF2  function Encodes depolymerizing factor 2.  go_component plasma membrane|GO:0005886|17317660|IDA  go_function actin binding|GO:0003779||IEA  go_component intracellular|GO:0005622||ISS  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process biological_process|GO:0008150||ND  product ADF2 (ACTIN DEPOLYMERIZING FACTOR 2); actin binding  note ACTIN DEPOLYMERIZING FACTOR 2 (ADF2); FUNCTIONS IN: actin binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, intracellular, plasma membrane, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding, cofilin/tropomyosin type (InterPro:IPR002108); BEST Arabidopsis thaliana protein match is: ADF4 (ACTIN DEPOLYMERIZING FACTOR 4); actin binding (TAIR:AT5G59890.1); Has 1068 Blast hits to 1067 proteins in 202 species: Archae - 0; Bacteria - 3; Metazoa - 524; Fungi - 99; Plants - 307; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).  protein_id AT3G46000.1p  transcript_id AT3G46000.1  protein_id AT3G46000.1p  transcript_id AT3G46000.1  
At3g46010	chr3:016910643	0.0	C/16910643-16910678,16909934-16910199,16909679-16909829	AT3G46010.2  CDS  gene_syn ACTIN DEPOLYMERIZING FACTOR 1, ADF1, ATADF1, atadf  gene ADF1  function Actin-depolymerizing factor (ADF) and cofilin define a family of actin-binding proteins essential for the rapid turnover of filamentous actin in vivo.  go_component intracellular|GO:0005622||IEA  go_component intracellular|GO:0005622||ISS  go_process actin filament organization|GO:0007015|11402164|IMP  go_function actin binding|GO:0003779|11025548|TAS  product ADF1 (ACTIN DEPOLYMERIZING FACTOR 1); actin binding  note ACTIN DEPOLYMERIZING FACTOR 1 (ADF1); FUNCTIONS IN: actin binding; INVOLVED IN: actin filament organization; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding, cofilin/tropomyosin type (InterPro:IPR002108); BEST Arabidopsis thaliana protein match is: ADF4 (ACTIN DEPOLYMERIZING FACTOR 4); actin binding (TAIR:AT5G59890.1); Has 1060 Blast hits to 1059 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 505; Fungi - 110; Plants - 307; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).  protein_id AT3G46010.2p  transcript_id AT3G46010.2  protein_id AT3G46010.2p  transcript_id AT3G46010.2  
At3g46010	chr3:016910676	0.0	C/16910676-16910678,16909934-16910199,16909679-16909829	AT3G46010.1  CDS  gene_syn ACTIN DEPOLYMERIZING FACTOR 1, ADF1, ATADF1, atadf  gene ADF1  function Actin-depolymerizing factor (ADF) and cofilin define a family of actin-binding proteins essential for the rapid turnover of filamentous actin in vivo.  go_component intracellular|GO:0005622||IEA  go_component intracellular|GO:0005622||ISS  go_process actin filament organization|GO:0007015|11402164|IMP  go_function actin binding|GO:0003779|11025548|TAS  product ADF1 (ACTIN DEPOLYMERIZING FACTOR 1); actin binding  note ACTIN DEPOLYMERIZING FACTOR 1 (ADF1); FUNCTIONS IN: actin binding; INVOLVED IN: actin filament organization; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding, cofilin/tropomyosin type (InterPro:IPR002108); BEST Arabidopsis thaliana protein match is: ADF4 (ACTIN DEPOLYMERIZING FACTOR 4); actin binding (TAIR:AT5G59890.1); Has 1060 Blast hits to 1059 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 505; Fungi - 110; Plants - 307; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).  protein_id AT3G46010.1p  transcript_id AT3G46010.1  protein_id AT3G46010.1p  transcript_id AT3G46010.1  
At3g46020	chr3:016913214	0.0	C/16913214-16913250,16913064-16913132,16912887-16912993,16912511-16912606	AT3G46020.1  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA-binding protein, putative  note RNA-binding protein, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT5G59860.1); Has 20832 Blast hits to 15264 proteins in 631 species: Archae - 8; Bacteria - 979; Metazoa - 12428; Fungi - 2358; Plants - 2944; Viruses - 0; Other Eukaryotes - 2115 (source: NCBI BLink).  protein_id AT3G46020.1p  transcript_id AT3G46020.1  protein_id AT3G46020.1p  transcript_id AT3G46020.1  
At3g46030	chr3:016913614	0.0	C/16913614-16914051	AT3G46030.1  CDS  gene_syn HTB11  gene HTB11  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product HTB11; DNA binding  note HTB11; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: HTB9; DNA binding (TAIR:AT3G45980.1); Has 2721 Blast hits to 2706 proteins in 276 species: Archae - 0; Bacteria - 1; Metazoa - 1863; Fungi - 166; Plants - 361; Viruses - 0; Other Eukaryotes - 330 (source: NCBI BLink).  protein_id AT3G46030.1p  transcript_id AT3G46030.1  protein_id AT3G46030.1p  transcript_id AT3G46030.1  
At3g46040	chr3:016914891	0.0	W/16914891-16915023,16915103-16915263,16915431-16915529	AT3G46040.1  CDS  gene_syn RPS15AD, ribosomal protein S15A D  gene RPS15AD  function Regulated by TCP20.  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product RPS15AD (ribosomal protein S15A D); structural constituent of ribosome  note ribosomal protein S15A D (RPS15AD); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8 (InterPro:IPR000630); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S15A (RPS15aF) (TAIR:AT5G59850.1); Has 2074 Blast hits to 2074 proteins in 728 species: Archae - 184; Bacteria - 862; Metazoa - 327; Fungi - 130; Plants - 161; Viruses - 0; Other Eukaryotes - 410 (source: NCBI BLink).  protein_id AT3G46040.1p  transcript_id AT3G46040.1  protein_id AT3G46040.1p  transcript_id AT3G46040.1  
At3g46050	chr3:016916072	0.0	W/16916072-16917184	AT3G46050.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT5G03000.1); Has 4360 Blast hits to 2908 proteins in 198 species: Archae - 12; Bacteria - 178; Metazoa - 3123; Fungi - 46; Plants - 680; Viruses - 163; Other Eukaryotes - 158 (source: NCBI BLink).  protein_id AT3G46050.1p  transcript_id AT3G46050.1  protein_id AT3G46050.1p  transcript_id AT3G46050.1  
At3g46060	chr3:016917908	0.0	W/16917908-16917980,16918164-16918236,16918340-16918440,16918975-16919040,16919143-16919240,16919327-16919389,16919480-16919572,16919657-16919740	AT3G46060.1  CDS  gene_syn ARA-3, ARA3, ATRAB8A, ATRABE1C, SMALL GTP-BINDING PROTEIN  gene ATRAB8A  function small GTP-binding protein (ara-3)  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process ethylene mediated signaling pathway|GO:0009873|12692329|IEP  go_function GTP binding|GO:0005525|1748311|ISS  go_function GTP binding|GO:0005525||ISS  product ATRAB8A; GTP binding  note ATRAB8A; FUNCTIONS IN: GTP binding; INVOLVED IN: ethylene mediated signaling pathway; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: Ras-related GTP-binding family protein (TAIR:AT5G59840.1); Has 23629 Blast hits to 23576 proteins in 647 species: Archae - 17; Bacteria - 115; Metazoa - 13122; Fungi - 2888; Plants - 2228; Viruses - 19; Other Eukaryotes - 5240 (source: NCBI BLink).  protein_id AT3G46060.1p  transcript_id AT3G46060.1  protein_id AT3G46060.1p  transcript_id AT3G46060.1  
At3g46060	chr3:016917908	0.0	W/16917908-16917980,16918164-16918236,16918340-16918440,16918975-16919040,16919143-16919240,16919327-16919389,16919480-16919572,16919657-16919740	AT3G46060.2  CDS  gene_syn ARA-3, ARA3, ATRAB8A, ATRABE1C, SMALL GTP-BINDING PROTEIN  gene ATRAB8A  function small GTP-binding protein (ara-3)  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process ethylene mediated signaling pathway|GO:0009873|12692329|IEP  go_function GTP binding|GO:0005525|1748311|ISS  go_function GTP binding|GO:0005525||ISS  product ATRAB8A; GTP binding  note ARA3; FUNCTIONS IN: GTP binding; INVOLVED IN: ethylene mediated signaling pathway; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: Ras-related GTP-binding family protein (TAIR:AT5G59840.1); Has 23629 Blast hits to 23576 proteins in 647 species: Archae - 17; Bacteria - 115; Metazoa - 13122; Fungi - 2888; Plants - 2228; Viruses - 19; Other Eukaryotes - 5240 (source: NCBI BLink).  protein_id AT3G46060.2p  transcript_id AT3G46060.2  protein_id AT3G46060.2p  transcript_id AT3G46060.2  
At3g46060	chr3:016917908	0.0	W/16917908-16917980,16918164-16918236,16918340-16918440,16918975-16919040,16919143-16919240,16919327-16919389,16919480-16919572,16919657-16919740	AT3G46060.3  CDS  gene_syn ARA-3, ARA3, ATRAB8A, ATRABE1C, SMALL GTP-BINDING PROTEIN  gene ATRAB8A  function small GTP-binding protein (ara-3)  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process ethylene mediated signaling pathway|GO:0009873|12692329|IEP  go_function GTP binding|GO:0005525|1748311|ISS  go_function GTP binding|GO:0005525||ISS  product ATRAB8A; GTP binding  note ARA3; FUNCTIONS IN: GTP binding; INVOLVED IN: ethylene mediated signaling pathway; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: Ras-related GTP-binding family protein (TAIR:AT5G59840.1); Has 23629 Blast hits to 23576 proteins in 647 species: Archae - 17; Bacteria - 115; Metazoa - 13122; Fungi - 2888; Plants - 2228; Viruses - 19; Other Eukaryotes - 5240 (source: NCBI BLink).  protein_id AT3G46060.3p  transcript_id AT3G46060.3  protein_id AT3G46060.3p  transcript_id AT3G46060.3  
At3g46070	chr3:016920445	0.0	C/16920445-16920957	AT3G46070.1  CDS  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT3G46080.1); Has 731 Blast hits to 714 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 288; Fungi - 0; Plants - 441; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G46070.1p  transcript_id AT3G46070.1  protein_id AT3G46070.1p  transcript_id AT3G46070.1  
At3g46080	chr3:016922753	0.0	C/16922753-16923247	AT3G46080.1  CDS  go_component intracellular|GO:0005622||IEA  go_process response to chitin|GO:0010200|17722694|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: response to chitin, regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: ZAT7; nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT3G46090.1); Has 792 Blast hits to 768 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 319; Fungi - 0; Plants - 471; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G46080.1p  transcript_id AT3G46080.1  protein_id AT3G46080.1p  transcript_id AT3G46080.1  
At3g46086	chr3:016925142	0.0	C/16925142-16925258	AT3G46086.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G46086.1p  transcript_id AT3G46086.1  protein_id AT3G46086.1p  transcript_id AT3G46086.1  
At3g46090	chr3:016926304	0.0	C/16926304-16926810	AT3G46090.1  CDS  gene_syn ZAT7  gene ZAT7  go_component intracellular|GO:0005622||IEA  go_process response to chitin|GO:0010200|17722694|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product ZAT7; nucleic acid binding / transcription factor/ zinc ion binding  note ZAT7; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: response to chitin, regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT3G46080.1); Has 685 Blast hits to 663 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 209; Fungi - 0; Plants - 474; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G46090.1p  transcript_id AT3G46090.1  protein_id AT3G46090.1p  transcript_id AT3G46090.1  
At3g46100	chr3:016930700	0.0	C/16930700-16930984,16930437-16930532,16930252-16930340,16929978-16930107,16929776-16929868,16929531-16929605,16929269-16929386,16929045-16929187,16928842-16928970,16928444-16928746	AT3G46100.1  CDS  gene_syn ATHRS1, HISTIDYL-TRNA SYNTHETASE, HISTIDYL-TRNA SYNTHETASE 1  gene ATHRS1  function histidyl-tRNA synthetase  go_component chloroplast|GO:0009507|18431481|IDA  go_component mitochondrion|GO:0005739|16251277|IDA  go_component mitochondrion|GO:0005739|9684861|IDA  go_component chloroplast|GO:0009507|16251277|IDA  go_component chloroplast|GO:0009507|9684861|IDA  go_process histidyl-tRNA aminoacylation|GO:0006427|9684861|ISS  go_function histidine-tRNA ligase activity|GO:0004821|9684861|ISS  go_function histidine-tRNA ligase activity|GO:0004821||ISS  product ATHRS1 (HISTIDYL-TRNA SYNTHETASE 1); histidine-tRNA ligase  note HISTIDYL-TRNA SYNTHETASE 1 (ATHRS1); FUNCTIONS IN: histidine-tRNA ligase activity; INVOLVED IN: histidyl-tRNA aminoacylation; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histidyl-tRNA synthetase, class IIa, subgroup (InterPro:IPR015807), Aminoacyl-tRNA synthetase, class II (G, H, P and S), conserved region (InterPro:IPR002314), Anticodon-binding (InterPro:IPR004154), Aminoacyl-tRNA synthetase, class II, conserved region (InterPro:IPR006195), Histidyl-tRNA synthetase, class IIa (InterPro:IPR004516); BEST Arabidopsis thaliana protein match is: ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding (TAIR:AT5G03406.1); Has 8315 Blast hits to 8292 proteins in 1671 species: Archae - 164; Bacteria - 4173; Metazoa - 214; Fungi - 95; Plants - 45; Viruses - 0; Other Eukaryotes - 3624 (source: NCBI BLink).  protein_id AT3G46100.1p  transcript_id AT3G46100.1  protein_id AT3G46100.1p  transcript_id AT3G46100.1  
At3g46110	chr3:016932244	0.0	W/16932244-16932397,16932484-16932553,16932648-16933355,16933489-16933588	AT3G46110.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  product unknown protein  note unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF966 (InterPro:IPR010369); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59790.1); Has 108 Blast hits to 89 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G46110.1p  transcript_id AT3G46110.1  protein_id AT3G46110.1p  transcript_id AT3G46110.1  
At3g46110	chr3:016932244	0.0	W/16932244-16932397,16932484-16932553,16932648-16933359	AT3G46110.2  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  product unknown protein  note unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF966 (InterPro:IPR010369); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59790.1); Has 108 Blast hits to 89 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G46110.2p  transcript_id AT3G46110.2  protein_id AT3G46110.2p  transcript_id AT3G46110.2  
At3g46120	chr3:016939599	0.0	C/16939599-16939766,16939291-16939500,16936832-16937026,16936621-16936704,16936195-16936505,16935921-16936119	AT3G46120.1  CDS  gene_syn ATPAP19, PAP19, PURPLE ACID PHOSPHATASE 19  gene PAP19  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function acid phosphatase activity|GO:0003993|16244908|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PAP19 (PURPLE ACID PHOSPHATASE 19); acid phosphatase/ protein serine/threonine phosphatase  note PURPLE ACID PHOSPHATASE 19 (PAP19); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: PAP11 (PURPLE ACID PHOSPHATASE 11); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT2G18130.1); Has 963 Blast hits to 956 proteins in 212 species: Archae - 0; Bacteria - 198; Metazoa - 165; Fungi - 62; Plants - 437; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT3G46120.1p  transcript_id AT3G46120.1  protein_id AT3G46120.1p  transcript_id AT3G46120.1  
At3g46130	chr3:016945433	0.0	W/16945433-16945550,16945621-16945750,16945854-16946376	AT3G46130.1  CDS  gene_syn ATMYB48, ATMYB48-1, ATMYB48-2, ATMYB48-3, MYB DOMAIN PROTEIN 111, MYB DOMAIN PROTEIN 48, MYB111, PFG3, PRODUCTION OF FLAVONOL GLYCOSIDES 3  gene MYB111  function Encodes a putative transcription factor (MYB48) that functions to regulate flavonol biosynthesis primarily in cotyledons.  go_component nucleus|GO:0005634|16531467|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|11597504|ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_process flavonol biosynthetic process|GO:0051555|17419845|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB111 (MYB DOMAIN PROTEIN 111); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 111 (MYB111); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 10 processes; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB59 (MYB DOMAIN PROTEIN 59); DNA binding / transcription factor (TAIR:AT5G59780.3); Has 6397 Blast hits to 5907 proteins in 354 species: Archae - 0; Bacteria - 0; Metazoa - 633; Fungi - 301; Plants - 3845; Viruses - 3; Other Eukaryotes - 1615 (source: NCBI BLink).  protein_id AT3G46130.1p  transcript_id AT3G46130.1  protein_id AT3G46130.1p  transcript_id AT3G46130.1  
At3g46130	chr3:016945465	0.0	W/16945465-16945492,16945621-16945750,16945854-16946376	AT3G46130.3  CDS  gene_syn ATMYB48, ATMYB48-1, ATMYB48-2, ATMYB48-3, MYB DOMAIN PROTEIN 111, MYB DOMAIN PROTEIN 48, MYB111, PFG3, PRODUCTION OF FLAVONOL GLYCOSIDES 3  gene MYB111  function Encodes a putative transcription factor (MYB48) that functions to regulate flavonol biosynthesis primarily in cotyledons.  go_component nucleus|GO:0005634|16531467|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|11597504|ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_process flavonol biosynthetic process|GO:0051555|17419845|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB111 (MYB DOMAIN PROTEIN 111); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 111 (MYB111); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 10 processes; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: MYB59 (MYB DOMAIN PROTEIN 59); DNA binding / transcription factor (TAIR:AT5G59780.3); Has 5674 Blast hits to 5395 proteins in 311 species: Archae - 0; Bacteria - 0; Metazoa - 434; Fungi - 151; Plants - 3731; Viruses - 3; Other Eukaryotes - 1355 (source: NCBI BLink).  protein_id AT3G46130.3p  transcript_id AT3G46130.3  protein_id AT3G46130.3p  transcript_id AT3G46130.3  
At3g46130	chr3:016945695	0.0	W/16945695-16945750,16945854-16946376	AT3G46130.2  CDS  gene_syn ATMYB48, ATMYB48-1, ATMYB48-2, ATMYB48-3, MYB DOMAIN PROTEIN 111, MYB DOMAIN PROTEIN 48, MYB111, PFG3, PRODUCTION OF FLAVONOL GLYCOSIDES 3  gene MYB111  function Encodes a putative transcription factor (MYB48) that functions to regulate flavonol biosynthesis primarily in cotyledons.  go_component nucleus|GO:0005634|16531467|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|11597504|ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_process flavonol biosynthetic process|GO:0051555|17419845|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB111 (MYB DOMAIN PROTEIN 111); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 111 (MYB111); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 10 processes; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB59 (MYB DOMAIN PROTEIN 59); DNA binding / transcription factor (TAIR:AT5G59780.3); Has 3901 Blast hits to 3900 proteins in 259 species: Archae - 0; Bacteria - 0; Metazoa - 248; Fungi - 55; Plants - 3138; Viruses - 3; Other Eukaryotes - 457 (source: NCBI BLink).  protein_id AT3G46130.2p  transcript_id AT3G46130.2  protein_id AT3G46130.2p  transcript_id AT3G46130.2  
At3g46140	chr3:016948090	0.0	W/16948090-16949220	AT3G46140.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase-related  note protein kinase-related; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase-related (TAIR:AT3G45790.1); Has 83644 Blast hits to 82848 proteins in 3025 species: Archae - 69; Bacteria - 7191; Metazoa - 36423; Fungi - 7471; Plants - 16584; Viruses - 566; Other Eukaryotes - 15340 (source: NCBI BLink).  protein_id AT3G46140.1p  transcript_id AT3G46140.1  protein_id AT3G46140.1p  transcript_id AT3G46140.1  
At3g46150	chr3:016950015	0.0	C/16950015-16950145,16949858-16949916,16949531-16949769	AT3G46150.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G46150.1p  transcript_id AT3G46150.1  protein_id AT3G46150.1p  transcript_id AT3G46150.1  
At3g46160	chr3:016950955	0.0	W/16950955-16952136	AT3G46160.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase-related  note protein kinase-related; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G18530.1); Has 76288 Blast hits to 71684 proteins in 1770 species: Archae - 42; Bacteria - 5853; Metazoa - 34643; Fungi - 6763; Plants - 14130; Viruses - 539; Other Eukaryotes - 14318 (source: NCBI BLink).  protein_id AT3G46160.1p  transcript_id AT3G46160.1  protein_id AT3G46160.1p  transcript_id AT3G46160.1  
At3g46170	chr3:016952723	0.0	C/16952723-16953589	AT3G46170.1  CDS  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: response to cadmium ion; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT3G55290.1); Has 84920 Blast hits to 84770 proteins in 2314 species: Archae - 479; Bacteria - 45825; Metazoa - 6221; Fungi - 4265; Plants - 1820; Viruses - 5; Other Eukaryotes - 26305 (source: NCBI BLink).  protein_id AT3G46170.1p  transcript_id AT3G46170.1  protein_id AT3G46170.1p  transcript_id AT3G46170.1  
At3g46180	chr3:016956687	0.0	C/16956687-16956800,16956463-16956576,16956219-16956377,16956029-16956127,16955859-16955938,16955642-16955754,16955216-16955304,16955036-16955122,16954881-16954949,16954671-16954790	AT3G46180.1  CDS  gene_syn ATUTR5, UDP-GALACTOSE TRANSPORTER 5, UTR5  gene UTR5  go_function galactose transmembrane transporter activity|GO:0005354||ISS  product UTR5 (UDP-GALACTOSE TRANSPORTER 5); galactose transmembrane transporter  note UDP-GALACTOSE TRANSPORTER 5 (UTR5); FUNCTIONS IN: galactose transmembrane transporter activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: UAA transporter (InterPro:IPR013657); BEST Arabidopsis thaliana protein match is: UDP-galactose/UDP-glucose transporter-related (TAIR:AT5G59740.1); Has 812 Blast hits to 812 proteins in 169 species: Archae - 0; Bacteria - 4; Metazoa - 473; Fungi - 123; Plants - 110; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).  protein_id AT3G46180.1p  transcript_id AT3G46180.1  protein_id AT3G46180.1p  transcript_id AT3G46180.1  
At3g46183	chr3:016957635	0.0	C/16957635-16962212	AT3G46183.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.7e-230 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)  
At3g46186	chr3:016963251	0.0	W/16963251-16963628	AT3G46186.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein, similar to non-LTR reverse transcriptase, putative  
At3g46190	chr3:016965889	0.0	W/16965889-16966085,16966192-16966358,16966489-16966542,16966626-16966776,16966867-16967015,16967188-16967345	AT3G46190.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: ZW9 (TAIR:AT1G58270.1); Has 613 Blast hits to 593 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 266; Fungi - 7; Plants - 306; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT3G46190.1p  transcript_id AT3G46190.1  protein_id AT3G46190.1p  transcript_id AT3G46190.1  
At3g46200	chr3:016969283	0.0	W/16969283-16969369,16969448-16969522,16969660-16969716,16969788-16969873,16969982-16970040,16970155-16970303,16970401-16970544,16970623-16970781,16970898-16971017	AT3G46200.1  CDS  gene_syn Arabidopsis thaliana Nudix hydrolase homolog 9, aTNUDT9  gene aTNUDT9  go_component cytosol|GO:0005829|15878881|RCA  go_function hydrolase activity|GO:0016787||IEA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product aTNUDT9 (Arabidopsis thaliana Nudix hydrolase homolog 9); hydrolase  note Arabidopsis thaliana Nudix hydrolase homolog 9 (aTNUDT9); FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), NUDIX hydrolase, core (InterPro:IPR000086); Has 81 Blast hits to 81 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 52; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT3G46200.1p  transcript_id AT3G46200.1  protein_id AT3G46200.1p  transcript_id AT3G46200.1  
At3g46206	chr3:016974646	0.0	C/16974646-16974765	AT3G46206.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G46206.1p  transcript_id AT3G46206.1  protein_id AT3G46206.1p  transcript_id AT3G46206.1  
At3g46210	chr3:016978384	0.0	C/16978384-16978489,16978182-16978295,16977965-16978065,16977861-16977881,16977564-16977636,16977423-16977490,16977211-16977343,16976960-16977063	AT3G46210.1  CDS  go_process RNA processing|GO:0006396||IEA  go_function 3 -5 -exoribonuclease activity|GO:0000175||IEA  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process RNA processing|GO:0006396||ISS  go_function 3 -5 -exoribonuclease activity|GO:0000175||ISS  go_function RNA binding|GO:0003723||ISS  product 3  exoribonuclease family domain 1-containing protein  note 3  exoribonuclease family domain 1-containing protein; FUNCTIONS IN: 3 -5 -exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G07110.1); Has 4158 Blast hits to 4158 proteins in 1112 species: Archae - 168; Bacteria - 2351; Metazoa - 276; Fungi - 152; Plants - 96; Viruses - 0; Other Eukaryotes - 1115 (source: NCBI BLink).  protein_id AT3G46210.1p  transcript_id AT3G46210.1  protein_id AT3G46210.1p  transcript_id AT3G46210.1  
At3g46210	chr3:016978384	0.0	C/16978384-16978489,16978182-16978295,16977965-16978065,16977861-16977881,16977564-16977636,16977423-16977490,16977211-16977343,16976960-16977063	AT3G46210.2  CDS  go_process RNA processing|GO:0006396||IEA  go_function 3 -5 -exoribonuclease activity|GO:0000175||IEA  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process RNA processing|GO:0006396||ISS  go_function 3 -5 -exoribonuclease activity|GO:0000175||ISS  go_function RNA binding|GO:0003723||ISS  product 3  exoribonuclease family domain 1-containing protein  note 3  exoribonuclease family domain 1-containing protein; FUNCTIONS IN: 3 -5 -exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G07110.1); Has 4158 Blast hits to 4158 proteins in 1112 species: Archae - 168; Bacteria - 2351; Metazoa - 276; Fungi - 152; Plants - 96; Viruses - 0; Other Eukaryotes - 1115 (source: NCBI BLink).  protein_id AT3G46210.2p  transcript_id AT3G46210.2  protein_id AT3G46210.2p  transcript_id AT3G46210.2  
At3g46210	chr3:016978384	0.0	C/16978384-16978489,16978182-16978295,16977965-16978065,16977861-16977881,16977564-16977636,16977423-16977490,16977211-16977343,16976960-16977063	AT3G46210.3  CDS  go_process RNA processing|GO:0006396||IEA  go_function 3 -5 -exoribonuclease activity|GO:0000175||IEA  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process RNA processing|GO:0006396||ISS  go_function 3 -5 -exoribonuclease activity|GO:0000175||ISS  go_function RNA binding|GO:0003723||ISS  product 3  exoribonuclease family domain 1-containing protein  note 3  exoribonuclease family domain 1-containing protein; FUNCTIONS IN: 3 -5 -exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G07110.1); Has 4158 Blast hits to 4158 proteins in 1112 species: Archae - 168; Bacteria - 2351; Metazoa - 276; Fungi - 152; Plants - 96; Viruses - 0; Other Eukaryotes - 1115 (source: NCBI BLink).  protein_id AT3G46210.3p  transcript_id AT3G46210.3  protein_id AT3G46210.3p  transcript_id AT3G46210.3  
At3g46210	chr3:016978384	0.0	C/16978384-16978489,16978182-16978295,16977965-16978065,16977861-16977881,16977564-16977636,16977423-16977490,16977211-16977343,16976960-16977063	AT3G46210.4  CDS  go_process RNA processing|GO:0006396||IEA  go_function 3 -5 -exoribonuclease activity|GO:0000175||IEA  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process RNA processing|GO:0006396||ISS  go_function 3 -5 -exoribonuclease activity|GO:0000175||ISS  go_function RNA binding|GO:0003723||ISS  product 3  exoribonuclease family domain 1-containing protein  note 3  exoribonuclease family domain 1-containing protein; FUNCTIONS IN: 3 -5 -exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G07110.1); Has 4158 Blast hits to 4158 proteins in 1112 species: Archae - 168; Bacteria - 2351; Metazoa - 276; Fungi - 152; Plants - 96; Viruses - 0; Other Eukaryotes - 1115 (source: NCBI BLink).  protein_id AT3G46210.4p  transcript_id AT3G46210.4  protein_id AT3G46210.4p  transcript_id AT3G46210.4  
At3g46210	chr3:016978384	0.0	C/16978384-16978489,16978182-16978295,16977965-16978065,16977861-16977881,16977564-16977636,16977423-16977490,16977211-16977343,16976960-16977063	AT3G46210.5  CDS  go_process RNA processing|GO:0006396||IEA  go_function 3 -5 -exoribonuclease activity|GO:0000175||IEA  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process RNA processing|GO:0006396||ISS  go_function 3 -5 -exoribonuclease activity|GO:0000175||ISS  go_function RNA binding|GO:0003723||ISS  product 3  exoribonuclease family domain 1-containing protein  note 3  exoribonuclease family domain 1-containing protein; FUNCTIONS IN: 3 -5 -exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G07110.1); Has 4158 Blast hits to 4158 proteins in 1112 species: Archae - 168; Bacteria - 2351; Metazoa - 276; Fungi - 152; Plants - 96; Viruses - 0; Other Eukaryotes - 1115 (source: NCBI BLink).  protein_id AT3G46210.5p  transcript_id AT3G46210.5  protein_id AT3G46210.5p  transcript_id AT3G46210.5  
At3g46220	chr3:016979174	0.0	W/16979174-16979347,16979538-16979849,16979941-16980207,16980370-16980417,16980591-16980656,16980793-16980896,16981014-16981107,16981182-16981238,16981350-16981737,16981832-16981986,16982114-16982179,16982263-16982331,16982410-16982502,16982617-16982682,16983000-16983046,16983139-16983202,16983296-16983373,16983454-16983516,16983661-16983753,16983860-16983970	AT3G46220.1  CDS  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2042 (InterPro:IPR018611); Has 419 Blast hits to 403 proteins in 105 species: Archae - 2; Bacteria - 16; Metazoa - 245; Fungi - 35; Plants - 31; Viruses - 3; Other Eukaryotes - 87 (source: NCBI BLink).  protein_id AT3G46220.1p  transcript_id AT3G46220.1  protein_id AT3G46220.1p  transcript_id AT3G46220.1  
At3g46230	chr3:016984263	0.0	C/16984263-16984733	AT3G46230.1  CDS  gene_syn ATHSP17.4, SMALL HEAT-SHOCK PROTEIN 17.4  gene ATHSP17.4  function member of the class I small heat-shock protein (sHSP) family, which accounts for the majority of sHSPs in maturing seeds  go_component cellular_component|GO:0005575||ND  go_process response to heat|GO:0009408|8883386|IEP  product ATHSP17.4  note ATHSP17.4; INVOLVED IN: response to heat; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) (TAIR:AT1G53540.1); Has 4388 Blast hits to 4388 proteins in 962 species: Archae - 105; Bacteria - 2471; Metazoa - 62; Fungi - 214; Plants - 997; Viruses - 0; Other Eukaryotes - 539 (source: NCBI BLink).  protein_id AT3G46230.1p  transcript_id AT3G46230.1  protein_id AT3G46230.1p  transcript_id AT3G46230.1  
At3g46240	chr3:016987578	0.0	C/16987578-16988064,16986614-16987129,16986408-16986461,16986082-16986237,16985843-16985955	AT3G46240.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product protein kinase-related  note protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl; BEST Arabidopsis thaliana protein match is: receptor protein kinase-related (TAIR:AT3G46270.1); Has 37201 Blast hits to 10704 proteins in 826 species: Archae - 61; Bacteria - 10344; Metazoa - 8962; Fungi - 3053; Plants - 5233; Viruses - 654; Other Eukaryotes - 8894 (source: NCBI BLink).  protein_id AT3G46240.1p  transcript_id AT3G46240.1  protein_id AT3G46240.1p  transcript_id AT3G46240.1  
At3g46250	chr3:016990102	0.0	C/16990102-16992407	AT3G46250.1  pseudogenic_transcript  pseudo  gene_syn F12M12.220  note pseudogene, similar to leaf senescence-associated receptor-like protein kinase, serine/threonine-specific receptor protein kinase, Arabidopsis thaliana, PIR:S71277; blastp match of 31% identity and 2.8e-15 P-value to GP|9837280|gb|AAG00510.1||AF285172 leaf senescence-associated receptor-like protein kinase {Phaseolus vulgaris}  
At3g46260	chr3:016999911	0.0	C/16999911-16999992,16998999-16999536,16998163-16998847	AT3G46260.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product protein kinase-related  note protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: receptor protein kinase-related (TAIR:AT3G46270.1); Has 402 Blast hits to 400 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 402; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G46260.1p  transcript_id AT3G46260.1  protein_id AT3G46260.1p  transcript_id AT3G46260.1  
At3g46270	chr3:017004153	0.0	C/17004153-17004237,17002686-17003220,17001812-17002341,17001085-17001252,17000887-17000981	AT3G46270.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product receptor protein kinase-related  note receptor protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: protein kinase-related (TAIR:AT3G46280.1); Has 2698 Blast hits to 1337 proteins in 202 species: Archae - 2; Bacteria - 476; Metazoa - 858; Fungi - 261; Plants - 642; Viruses - 15; Other Eukaryotes - 444 (source: NCBI BLink).  protein_id AT3G46270.1p  transcript_id AT3G46270.1  protein_id AT3G46270.1p  transcript_id AT3G46270.1  
At3g46280	chr3:017008341	0.0	C/17008341-17008410,17007704-17008238,17006862-17007370,17006568-17006606,17005859-17006026,17005672-17005766	AT3G46280.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product protein kinase-related  note protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: receptor protein kinase-related (TAIR:AT3G46270.1); Has 428 Blast hits to 425 proteins in 35 species: Archae - 0; Bacteria - 3; Metazoa - 8; Fungi - 8; Plants - 407; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G46280.1p  transcript_id AT3G46280.1  protein_id AT3G46280.1p  transcript_id AT3G46280.1  
At3g46290	chr3:017013009	0.0	W/17013009-17015501	AT3G46290.1  CDS  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT5G59700.1); Has 84021 Blast hits to 83080 proteins in 3289 species: Archae - 46; Bacteria - 7437; Metazoa - 37100; Fungi - 6558; Plants - 18598; Viruses - 354; Other Eukaryotes - 13928 (source: NCBI BLink).  protein_id AT3G46290.1p  transcript_id AT3G46290.1  protein_id AT3G46290.1p  transcript_id AT3G46290.1  
At3g46300	chr3:017016019	0.0	C/17016019-17016444	AT3G46300.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46310.1); Has 19 Blast hits to 19 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G46300.1p  transcript_id AT3G46300.1  protein_id AT3G46300.1p  transcript_id AT3G46300.1  
At3g46310	chr3:017017451	0.0	C/17017451-17017825	AT3G46310.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46300.1); Has 19 Blast hits to 19 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G46310.1p  transcript_id AT3G46310.1  protein_id AT3G46310.1p  transcript_id AT3G46310.1  
At3g46320	chr3:017020043	0.0	C/17020043-17020354	AT3G46320.1  CDS  gene_syn F18L15.40  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_component nucleosome|GO:0000786||ISS  go_component nucleus|GO:0005634||ISS  go_process nucleosome assembly|GO:0006334||ISS  go_process chromosome organization|GO:0051276||ISS  go_function DNA binding|GO:0003677||ISS  product histone H4  note histone H4; FUNCTIONS IN: DNA binding; INVOLVED IN: chromosome organization, nucleosome assembly; LOCATED IN: nucleus, nucleosome; CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125), Histone H4 (InterPro:IPR001951); BEST Arabidopsis thaliana protein match is: histone H4 (TAIR:AT5G59970.1); Has 2716 Blast hits to 2716 proteins in 361 species: Archae - 0; Bacteria - 0; Metazoa - 1566; Fungi - 282; Plants - 355; Viruses - 6; Other Eukaryotes - 507 (source: NCBI BLink).  protein_id AT3G46320.1p  transcript_id AT3G46320.1  protein_id AT3G46320.1p  transcript_id AT3G46320.1  
At3g46330	chr3:017024797	0.0	C/17024797-17024884,17024015-17024552,17023407-17023885,17023147-17023291,17022983-17023054,17022796-17022867,17022635-17022712,17022380-17022531,17022082-17022287,17021832-17021958,17021414-17021672,17020887-17021307	AT3G46330.1  CDS  gene_syn MEE39, maternal effect embryo arrest 39  gene MEE39  go_component endomembrane system|GO:0012505||IEA  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function kinase activity|GO:0016301||ISS  product MEE39 (maternal effect embryo arrest 39); kinase  note maternal effect embryo arrest 39 (MEE39); FUNCTIONS IN: kinase activity; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT5G59650.1); Has 108299 Blast hits to 88100 proteins in 3309 species: Archae - 44; Bacteria - 7735; Metazoa - 38475; Fungi - 6613; Plants - 39874; Viruses - 363; Other Eukaryotes - 15195 (source: NCBI BLink).  protein_id AT3G46330.1p  transcript_id AT3G46330.1  protein_id AT3G46330.1p  transcript_id AT3G46330.1  
At3g46340	chr3:017026658	0.0	W/17026658-17026748,17027940-17028480,17028561-17029036,17029124-17029268,17029357-17029428,17029501-17029572,17029657-17029734,17029825-17029985,17030065-17030318,17030403-17030529,17030611-17030676,17031067-17031256,17031446-17031842	AT3G46340.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat protein kinase, putative  note leucine-rich repeat protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, pedicel, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT3G46400.1); Has 110964 Blast hits to 86826 proteins in 3270 species: Archae - 42; Bacteria - 7762; Metazoa - 37877; Fungi - 6409; Plants - 43718; Viruses - 325; Other Eukaryotes - 14831 (source: NCBI BLink).  protein_id AT3G46340.1p  transcript_id AT3G46340.1  protein_id AT3G46340.1p  transcript_id AT3G46340.1  
At3g46345	chr3:017032489	0.0	W/17032489-17032836	AT3G46345.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to non-LTR reverse transcriptase, putative  
At3g46350	chr3:017036427	0.0	W/17036427-17036511,17037345-17037891,17037972-17038275,17038356-17038455,17038536-17038680,17038769-17038840,17038919-17038990,17039082-17039159,17039246-17039415,17039499-17039749,17039860-17039986,17040077-17040142,17040896-17041085,17041272-17041680	AT3G46350.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat protein kinase, putative  note leucine-rich repeat protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT3G46340.1); Has 97405 Blast hits to 83782 proteins in 3175 species: Archae - 40; Bacteria - 7008; Metazoa - 36858; Fungi - 6377; Plants - 32798; Viruses - 329; Other Eukaryotes - 13995 (source: NCBI BLink).  protein_id AT3G46350.1p  transcript_id AT3G46350.1  protein_id AT3G46350.1p  transcript_id AT3G46350.1  
At3g46360	chr3:017043451	0.0	C/17043451-17043500,17043038-17043138,17042849-17042968,17042501-17042695,17042215-17042342	AT3G46360.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44755.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G46360.1p  transcript_id AT3G46360.1  protein_id AT3G46360.1p  transcript_id AT3G46360.1  
At3g46370	chr3:017051955	0.0	W/17051955-17052313,17052399-17052874,17052969-17053113,17053216-17053287,17053361-17053432,17053515-17053592,17053689-17053861,17053981-17054198,17054318-17054444,17054560-17054625,17054802-17054991,17055109-17055514	AT3G46370.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat protein kinase, putative  note leucine-rich repeat protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT3G46400.1); Has 108118 Blast hits to 86087 proteins in 3145 species: Archae - 46; Bacteria - 7249; Metazoa - 37920; Fungi - 6378; Plants - 41571; Viruses - 347; Other Eukaryotes - 14607 (source: NCBI BLink).  protein_id AT3G46370.1p  transcript_id AT3G46370.1  protein_id AT3G46370.1p  transcript_id AT3G46370.1  
At3g46375	chr3:017055919	0.0	W/17055919-17057277	AT3G46375.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.3e-32 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At3g46380	chr3:017059836	0.0	C/17059836-17059896,17059665-17059757,17059218-17059417	AT3G46380.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G46380.1p  transcript_id AT3G46380.1  protein_id AT3G46380.1p  transcript_id AT3G46380.1  
At3g46382	chr3:017063425	0.0	W/17063425-17064105	AT3G46382.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to P0416D03.16, similar to non-LTR reverse transcriptase, putative; blastp match of 31% identity and 2.5e-08 P-value to GP|12328468|dbj|BAB21128.1||AP002872 P0416D03.16 {Oryza sativa (japonica cultivar-group)}  
At3g46384	chr3:017064271	0.0	W/17064271-17065121	AT3G46384.1  pseudogenic_transcript  pseudo  note pseudogene, receptor-related protein kinase homolog, similar to receptor-like protein kinase homolog; blastp match of 48% identity and 1.1e-26 P-value to GP|9837280|gb|AAG00510.1||AF285172 leaf senescence-associated receptor-like protein kinase {Phaseolus vulgaris}  
At3g46385	chr3:017065485	0.0	C/17065485-17066571	AT3G46385.1  pseudogenic_transcript  pseudo  function pseudogene of unknown protein  note expressed protein  
At3g46387	chr3:017067675	0.0	W/17067675-17068604	AT3G46387.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 4.6e-41 P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element)  
At3g46390	chr3:017071564	0.0	C/17071564-17071683,17071255-17071344	AT3G46390.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32337.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G46390.1p  transcript_id AT3G46390.1  protein_id AT3G46390.1p  transcript_id AT3G46390.1  
At3g46400	chr3:017073196	0.0	W/17073196-17073274,17073462-17074005,17074112-17074590,17074699-17074843,17074947-17075018,17075101-17075172,17075256-17075333,17075444-17075598,17075705-17075940,17076061-17076187,17076261-17076326,17076618-17076807,17076920-17077328	AT3G46400.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat protein kinase, putative  note leucine-rich repeat protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT3G46370.1); Has 109288 Blast hits to 88665 proteins in 3285 species: Archae - 56; Bacteria - 7774; Metazoa - 38584; Fungi - 6768; Plants - 40391; Viruses - 357; Other Eukaryotes - 15358 (source: NCBI BLink).  protein_id AT3G46400.1p  transcript_id AT3G46400.1  protein_id AT3G46400.1p  transcript_id AT3G46400.1  
At3g46410	chr3:017079093	0.0	W/17079093-17079185,17079359-17079485,17079553-17079618,17079903-17080092,17080285-17080684	AT3G46410.1  CDS  go_component peroxisome|GO:0005777|12154131|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: peroxisome; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT3G46340.1); Has 74023 Blast hits to 73405 proteins in 2874 species: Archae - 38; Bacteria - 6057; Metazoa - 33372; Fungi - 5326; Plants - 17164; Viruses - 263; Other Eukaryotes - 11803 (source: NCBI BLink).  protein_id AT3G46410.1p  transcript_id AT3G46410.1  protein_id AT3G46410.1p  transcript_id AT3G46410.1  
At3g46420	chr3:017082108	0.0	W/17082108-17082189,17082678-17083218,17083365-17083840,17083945-17084089,17084200-17084271,17084377-17084448,17084539-17084616,17084699-17084807,17085027-17085176,17085313-17085439,17085540-17085605,17085714-17085903,17086126-17086534	AT3G46420.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat family protein / protein kinase family protein  note leucine-rich repeat family protein / protein kinase family protein; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT3G46340.1); Has 112574 Blast hits to 87354 proteins in 3312 species: Archae - 44; Bacteria - 7639; Metazoa - 38227; Fungi - 6525; Plants - 44866; Viruses - 341; Other Eukaryotes - 14932 (source: NCBI BLink).  protein_id AT3G46420.1p  transcript_id AT3G46420.1  protein_id AT3G46420.1p  transcript_id AT3G46420.1  
At3g46430	chr3:017087687	0.0	W/17087687-17087807,17087970-17088012,17088494-17088497	AT3G46430.1  CDS  go_component mitochondrion|GO:0005739|15276431|IDA  go_component mitochondrial respiratory chain complex III|GO:0005750|18189341|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, mitochondrial respiratory chain complex III; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59613.1); Has 26 Blast hits to 26 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G46430.1p  transcript_id AT3G46430.1  protein_id AT3G46430.1p  transcript_id AT3G46430.1  
At3g46440	chr3:017091534	0.0	C/17091534-17091611,17090852-17090938,17090680-17090767,17090425-17090581,17090254-17090342,17090090-17090167,17089888-17089981,17089665-17089795,17089534-17089574,17089268-17089450	AT3G46440.1  CDS  gene_syn UXS5  gene UXS5  function encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.  go_component chloroplast|GO:0009507||IEA  go_process nucleotide-sugar metabolic process|GO:0009225||ISS  go_process D-xylose metabolic process|GO:0042732|12481102|TAS  go_function catalytic activity|GO:0003824||ISS  go_function UDP-glucuronate decarboxylase activity|GO:0048040|12481102|ISS  product UXS5; UDP-glucuronate decarboxylase/ catalytic  note UXS5; FUNCTIONS IN: UDP-glucuronate decarboxylase activity, catalytic activity; INVOLVED IN: D-xylose metabolic process, nucleotide-sugar metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: UXS3 (UDP-GLUCURONIC ACID DECARBOXYLASE 3); UDP-glucuronate decarboxylase/ catalytic (TAIR:AT5G59290.2); Has 30760 Blast hits to 30726 proteins in 1740 species: Archae - 508; Bacteria - 14211; Metazoa - 590; Fungi - 263; Plants - 813; Viruses - 72; Other Eukaryotes - 14303 (source: NCBI BLink).  protein_id AT3G46440.1p  transcript_id AT3G46440.1  protein_id AT3G46440.1p  transcript_id AT3G46440.1  
At3g46440	chr3:017091534	0.0	C/17091534-17091611,17090852-17090938,17090680-17090767,17090425-17090581,17090254-17090342,17090090-17090167,17089888-17089981,17089665-17089795,17089534-17089574,17089268-17089450	AT3G46440.2  CDS  gene_syn UXS5  gene UXS5  function encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.  go_component chloroplast|GO:0009507||IEA  go_process nucleotide-sugar metabolic process|GO:0009225||ISS  go_process D-xylose metabolic process|GO:0042732|12481102|TAS  go_function catalytic activity|GO:0003824||ISS  go_function UDP-glucuronate decarboxylase activity|GO:0048040|12481102|ISS  product UXS5; UDP-glucuronate decarboxylase/ catalytic  note UXS5; FUNCTIONS IN: UDP-glucuronate decarboxylase activity, catalytic activity; INVOLVED IN: D-xylose metabolic process, nucleotide-sugar metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: UXS3 (UDP-GLUCURONIC ACID DECARBOXYLASE 3); UDP-glucuronate decarboxylase/ catalytic (TAIR:AT5G59290.2); Has 30760 Blast hits to 30726 proteins in 1740 species: Archae - 508; Bacteria - 14211; Metazoa - 590; Fungi - 263; Plants - 813; Viruses - 72; Other Eukaryotes - 14303 (source: NCBI BLink).  protein_id AT3G46440.2p  transcript_id AT3G46440.2  protein_id AT3G46440.2p  transcript_id AT3G46440.2  
At3g46450	chr3:017094972	0.0	C/17094972-17095319,17094721-17094878,17094458-17094553,17094101-17094357,17093787-17094007,17093297-17093677	AT3G46450.1  CDS  go_component cellular_component|GO:0005575||ND  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  note SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251); BEST Arabidopsis thaliana protein match is: SFH3 (SEC14-LIKE 3); phosphatidylinositol transporter (TAIR:AT2G21540.2); Has 673 Blast hits to 673 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 227; Plants - 213; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT3G46450.1p  transcript_id AT3G46450.1  protein_id AT3G46450.1p  transcript_id AT3G46450.1  
At3g46450	chr3:017094972	0.0	C/17094972-17095319,17094721-17094902,17094458-17094553,17094101-17094357,17093787-17094007,17093297-17093677	AT3G46450.2  CDS  go_component cellular_component|GO:0005575||ND  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  note SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251); BEST Arabidopsis thaliana protein match is: SFH3 (SEC14-LIKE 3); phosphatidylinositol transporter (TAIR:AT2G21540.2); Has 673 Blast hits to 673 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 227; Plants - 213; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT3G46450.2p  transcript_id AT3G46450.2  protein_id AT3G46450.2p  transcript_id AT3G46450.2  
At3g46460	chr3:017097273	0.0	C/17097273-17097315,17097071-17097173,17096709-17096806,17096515-17096615,17096322-17096399,17096120-17096197	AT3G46460.1  CDS  gene_syn UBC13, ubiquitin-conjugating enzyme 13  gene UBC13  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC13 (ubiquitin-conjugating enzyme 13); ubiquitin-protein ligase  note ubiquitin-conjugating enzyme 13 (UBC13); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC14 (ubiquitin-conjugating enzyme 14); ubiquitin-protein ligase (TAIR:AT3G55380.1); Has 7555 Blast hits to 7535 proteins in 307 species: Archae - 0; Bacteria - 0; Metazoa - 3565; Fungi - 1492; Plants - 1176; Viruses - 19; Other Eukaryotes - 1303 (source: NCBI BLink).  protein_id AT3G46460.1p  transcript_id AT3G46460.1  protein_id AT3G46460.1p  transcript_id AT3G46460.1  
At3g46470	chr3:017100840	0.0	C/17100840-17100973,17100589-17100753,17100420-17100499,17100227-17100376,17099916-17099986	AT3G46470.1  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding / nucleotide binding  note nucleic acid binding / nucleotide binding; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G46470.1p  transcript_id AT3G46470.1  protein_id AT3G46470.1p  transcript_id AT3G46470.1  
At3g46480	chr3:017103173	0.0	W/17103173-17103280,17103470-17103587,17103671-17103706,17103838-17103889,17104402-17104523,17104598-17104695,17104772-17104830,17104929-17104985,17105098-17105143,17105339-17105418,17105510-17105594	AT3G46480.1  CDS  gene_syn F12A12.1  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors  note iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (TAIR:AT3G46490.1); Has 5626 Blast hits to 5619 proteins in 672 species: Archae - 0; Bacteria - 725; Metazoa - 128; Fungi - 689; Plants - 2694; Viruses - 0; Other Eukaryotes - 1390 (source: NCBI BLink).  protein_id AT3G46480.1p  transcript_id AT3G46480.1  protein_id AT3G46480.1p  transcript_id AT3G46480.1  
At3g46482	chr3:017105741	0.0	C/17105741-17106055	AT3G46482.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At3g46484	chr3:017106790	0.0	W/17106790-17110692	AT3G46484.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 2.9e-151 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At3g46487	chr3:017111429	0.0	W/17111429-17114136	AT3G46487.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 1.1e-38 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At3g46490	chr3:017115629	0.0	W/17115629-17115736,17115849-17116044,17116132-17116230,17116303-17116354,17118273-17118394,17118474-17118571,17118649-17118707,17118839-17118895,17119005-17119050,17119207-17119286,17119376-17119451	AT3G46490.1  CDS  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process secondary metabolic process|GO:0019748||ISS  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors  note iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding; INVOLVED IN: secondary metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT1G35190.1); Has 6005 Blast hits to 5976 proteins in 675 species: Archae - 0; Bacteria - 732; Metazoa - 131; Fungi - 710; Plants - 2759; Viruses - 0; Other Eukaryotes - 1673 (source: NCBI BLink).  protein_id AT3G46490.1p  transcript_id AT3G46490.1  protein_id AT3G46490.1p  transcript_id AT3G46490.1  
At3g46500	chr3:017120793	0.0	W/17120793-17120868,17120956-17121039,17121103-17121154,17121385-17121506,17121594-17121691,17121769-17121827,17121920-17121976,17122088-17122133,17122353-17122432,17122521-17122602	AT3G46500.1  CDS  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, iron ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (TAIR:AT3G46480.1); Has 5521 Blast hits to 5515 proteins in 666 species: Archae - 0; Bacteria - 721; Metazoa - 126; Fungi - 682; Plants - 2652; Viruses - 0; Other Eukaryotes - 1340 (source: NCBI BLink).  protein_id AT3G46500.1p  transcript_id AT3G46500.1  protein_id AT3G46500.1p  transcript_id AT3G46500.1  
At3g46510	chr3:017126270	0.0	C/17126270-17126539,17125885-17126001,17125342-17125791,17124106-17125251	AT3G46510.1  CDS  gene_syn ARABIDOPSIS THALIANA PLANT U-BOX 13, ATPUB13, PLANT U-BOX 13, PUB13  gene PUB13  function Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.  go_component nucleus|GO:0005634|18552232|IDA  go_component cytosol|GO:0005829|18552232|IDA  go_process protein ubiquitination|GO:0016567|14657406|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|14657406|IDA  product PUB13 (PLANT U-BOX 13); ubiquitin-protein ligase  note PLANT U-BOX 13 (PUB13); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding / structural constituent of ribosome / ubiquitin-protein ligase (TAIR:AT2G28830.1); Has 5408 Blast hits to 3791 proteins in 238 species: Archae - 4; Bacteria - 43; Metazoa - 2182; Fungi - 547; Plants - 2010; Viruses - 3; Other Eukaryotes - 619 (source: NCBI BLink).  protein_id AT3G46510.1p  transcript_id AT3G46510.1  protein_id AT3G46510.1p  transcript_id AT3G46510.1  
At3g46520	chr3:017128567	0.0	W/17128567-17128626,17128709-17129102,17129202-17129815,17129916-17129981	AT3G46520.1  CDS  gene_syn ACT12, ACTIN, ACTIN-12  gene ACT12  function Member of actin subclass composed of ACT12 and ACT4. RNA is expressed at very low levels in vegetative organs, low levels in flowers and very high levels in pollen. Expression of an ACT12/GUS fusion was found in vascular tissues, tapetum, developing and mature pollen, the root cap and in a ring of pericycle tissues during lateral root initiation and early development.  go_component mitochondrion|GO:0005739|14671022|IDA  go_component cytoskeleton|GO:0005856||TAS  go_process cytoskeleton organization|GO:0007010||TAS  go_function structural constituent of cytoskeleton|GO:0005200|8771777|ISS  go_function structural constituent of cytoskeleton|GO:0005200||ISS  product ACT12 (ACTIN-12); structural constituent of cytoskeleton  note ACTIN-12 (ACT12); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: cytoskeleton organization; LOCATED IN: mitochondrion, cytoskeleton; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: ACT4 (ACTIN 4); structural constituent of cytoskeleton (TAIR:AT5G59370.2); Has 11109 Blast hits to 10815 proteins in 2294 species: Archae - 8; Bacteria - 3; Metazoa - 4919; Fungi - 2961; Plants - 1101; Viruses - 2; Other Eukaryotes - 2115 (source: NCBI BLink).  protein_id AT3G46520.1p  transcript_id AT3G46520.1  protein_id AT3G46520.1p  transcript_id AT3G46520.1  
At3g46530	chr3:017130739	0.0	C/17130739-17133246	AT3G46530.1  CDS  gene_syn RECOGNITION OF PERONOSPORA PARASITICA 13, RPP13  gene RPP13  function Confers resistance to the biotrophic oomycete, Peronospora parasitica. Encodes an NBS-LRR type R protein with a putative amino-terminal leucine zipper. Fungal protein ATR13 induces RPP13 gene expression and disease resistance.  go_component plasma membrane|GO:0005886|17317660|IDA  go_function ATP binding|GO:0005524||IEA  go_component cytoplasm|GO:0005737|10743658|TAS  go_process defense response|GO:0006952|10743658|TAS  go_process defense response|GO:0006952||ISS  go_process plant-type hypersensitive response|GO:0009626|18198274|IMP  go_process defense response, incompatible interaction|GO:0009814|10743658|IMP  product RPP13 (RECOGNITION OF PERONOSPORA PARASITICA 13); ATP binding  note RECOGNITION OF PERONOSPORA PARASITICA 13 (RPP13); FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, incompatible interaction, plant-type hypersensitive response, defense response; LOCATED IN: plasma membrane, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS class), putative (TAIR:AT3G46730.1); Has 9152 Blast hits to 8915 proteins in 289 species: Archae - 5; Bacteria - 104; Metazoa - 142; Fungi - 21; Plants - 8858; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT3G46530.1p  transcript_id AT3G46530.1  protein_id AT3G46530.1p  transcript_id AT3G46530.1  
At3g46540	chr3:017135269	0.0	C/17135269-17135411,17135051-17135173,17134788-17134949,17134204-17134699	AT3G46540.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function binding|GO:0005488||ISS  product epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related  note epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Epsin, N-terminal (InterPro:IPR001026), Epsin-like, N-terminal (InterPro:IPR013809), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23350.1); Has 663 Blast hits to 663 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 371; Fungi - 139; Plants - 100; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT3G46540.1p  transcript_id AT3G46540.1  protein_id AT3G46540.1p  transcript_id AT3G46540.1  
At3g46550	chr3:017136612	0.0	C/17136612-17137874	AT3G46550.1  CDS  gene_syn SOS5, salt overly sensitive 5  gene SOS5  function Isolated in a screen for salt hypersensitive mutants. Mutants have thinner cell walls, abnormal siliques and root growth is inhibited under salt stress. The gene has similarity to arabinogalactan proteins and domains associated with cell adhesion.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_component external side of plasma membrane|GO:0009897|12509519|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process response to stress|GO:0006950|12509519|IMP  go_process cell adhesion|GO:0007155|12509519|ISS  go_process multidimensional cell growth|GO:0009825|12509519|IMP  go_function protein binding|GO:0005515|12509519|TAS  go_function polysaccharide binding|GO:0030247|12509519|TAS  product SOS5 (salt overly sensitive 5); polysaccharide binding / protein binding  note salt overly sensitive 5 (SOS5); FUNCTIONS IN: protein binding, polysaccharide binding; INVOLVED IN: multidimensional cell growth, cell adhesion, response to stress; LOCATED IN: anchored to plasma membrane, plasma membrane, external side of plasma membrane, anchored to membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FLA10 (TAIR:AT3G60900.1); Has 687 Blast hits to 640 proteins in 93 species: Archae - 4; Bacteria - 81; Metazoa - 28; Fungi - 17; Plants - 488; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT3G46550.1p  transcript_id AT3G46550.1  protein_id AT3G46550.1p  transcript_id AT3G46550.1  
At3g46560	chr3:017138632	0.0	W/17138632-17138726,17139115-17139301	AT3G46560.1  CDS  gene_syn TIM9, emb2474, embryo defective 2474  gene TIM9  function Encodes a small zinc finger-like protein that is a component of the mitochondrial protein import apparatus.  go_component mitochondrion|GO:0005739|14730085|IDA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_component mitochondrial intermembrane space|GO:0005758|14730085|IDA  go_process protein targeting to mitochondrion|GO:0006626||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product TIM9; P-P-bond-hydrolysis-driven protein transmembrane transporter  note TIM9; FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: embryonic development ending in seed dormancy, protein targeting to mitochondrion; LOCATED IN: mitochondrion, mitochondrial inner membrane, mitochondrial intermembrane space; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Tim10/DDP-type (InterPro:IPR004217); Has 390 Blast hits to 390 proteins in 134 species: Archae - 0; Bacteria - 0; Metazoa - 213; Fungi - 115; Plants - 36; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT3G46560.1p  transcript_id AT3G46560.1  protein_id AT3G46560.1p  transcript_id AT3G46560.1  
At3g46570	chr3:017145797	0.0	C/17145797-17146867	AT3G46570.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT5G24318.2); Has 1381 Blast hits to 1370 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1378; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G46570.1p  transcript_id AT3G46570.1  protein_id AT3G46570.1p  transcript_id AT3G46570.1  
At3g46580	chr3:017148397	0.0	W/17148397-17148567,17148870-17148995,17149077-17149328	AT3G46580.1  CDS  gene_syn MBD05, MBD5, MDB05, METHYL-CPG-BINDING DOMAIN PROTEIN 05, METHYL-CPG-BINDING DOMAIN PROTEIN 5  gene MBD5  function Protein containing a putative methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.  go_component perinucleolar chromocenter|GO:0010370|15805479|IDA  go_function methyl-CpG binding|GO:0008327|12787239|IDA  go_function methyl-CpG binding|GO:0008327|12787239|ISS  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product MBD5 (METHYL-CPG-BINDING DOMAIN PROTEIN 5); DNA binding / methyl-CpG binding  note METHYL-CPG-BINDING DOMAIN PROTEIN 5 (MBD5); FUNCTIONS IN: methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: perinucleolar chromocenter; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); BEST Arabidopsis thaliana protein match is: MBD6; DNA binding / DNA demethylase/ methyl-CpG binding (TAIR:AT5G59380.1); Has 77 Blast hits to 76 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 56; Fungi - 2; Plants - 16; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G46580.1p  transcript_id AT3G46580.1  protein_id AT3G46580.1p  transcript_id AT3G46580.1  
At3g46585	chr3:017149752	0.0	W/17149752-17149823	AT3G46585.1  tRNA  gene_syn 67254.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: TCC)  transcript_id AT3G46585.1  
At3g46590	chr3:017153642	0.0	W/17153642-17153722,17153817-17154363,17154449-17154592,17154679-17154741,17154831-17154910,17154994-17155190,17155278-17155571,17155639-17155702,17155773-17155946	AT3G46590.3  CDS  gene_syn ATTRP2, TRF-LIKE 1, TRFL1, TRP2  gene TRFL1  function Encodes a protein that specifically binds plant telomeric DNA (TTTAGGG)n repeats. Involved in bending DNA. Expressed throughout the plant with highest levels in flowers.  go_component nucleus|GO:0005634||ISS  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function DNA bending activity|GO:0008301|15688221|IDA  go_function telomeric DNA binding|GO:0042162|15688221|IDA  product TRFL1 (TRF-LIKE 1); DNA bending/ DNA binding / telomeric DNA binding  note TRF-LIKE 1 (TRFL1); FUNCTIONS IN: DNA bending activity, DNA binding, telomeric DNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Ubiquitin (InterPro:IPR000626), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRP1 (TELOMERIC REPEAT BINDING PROTEIN 1); DNA binding / double-stranded telomeric DNA binding (TAIR:AT5G59430.2); Has 158 Blast hits to 150 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT3G46590.3p  transcript_id AT3G46590.3  protein_id AT3G46590.3p  transcript_id AT3G46590.3  
At3g46590	chr3:017153642	0.0	W/17153642-17153722,17153817-17154381,17154449-17154592,17154679-17154741,17154831-17154910,17154994-17155190,17155278-17155571,17155639-17155702,17155773-17155946	AT3G46590.2  CDS  gene_syn ATTRP2, TRF-LIKE 1, TRFL1, TRP2  gene TRFL1  function Encodes a protein that specifically binds plant telomeric DNA (TTTAGGG)n repeats. Involved in bending DNA. Expressed throughout the plant with highest levels in flowers.  go_component nucleus|GO:0005634||ISS  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function DNA bending activity|GO:0008301|15688221|IDA  go_function telomeric DNA binding|GO:0042162|15688221|IDA  product TRFL1 (TRF-LIKE 1); DNA bending/ DNA binding / telomeric DNA binding  note TRF-LIKE 1 (TRFL1); FUNCTIONS IN: DNA bending activity, DNA binding, telomeric DNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Ubiquitin (InterPro:IPR000626), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRP1 (TELOMERIC REPEAT BINDING PROTEIN 1); DNA binding / double-stranded telomeric DNA binding (TAIR:AT5G59430.2); Has 158 Blast hits to 150 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT3G46590.2p  transcript_id AT3G46590.2  protein_id AT3G46590.2p  transcript_id AT3G46590.2  
At3g46590	chr3:017153642	0.0	W/17153642-17153722,17153820-17154381,17154449-17154592,17154679-17154741,17154831-17154910,17154994-17155190,17155278-17155571,17155639-17155702,17155773-17155946	AT3G46590.1  CDS  gene_syn ATTRP2, TRF-LIKE 1, TRFL1, TRP2  gene TRFL1  function Encodes a protein that specifically binds plant telomeric DNA (TTTAGGG)n repeats. Involved in bending DNA. Expressed throughout the plant with highest levels in flowers.  go_component nucleus|GO:0005634||ISS  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function DNA bending activity|GO:0008301|15688221|IDA  go_function telomeric DNA binding|GO:0042162|15688221|IDA  product TRFL1 (TRF-LIKE 1); DNA bending/ DNA binding / telomeric DNA binding  note TRF-LIKE 1 (TRFL1); FUNCTIONS IN: DNA bending activity, DNA binding, telomeric DNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Ubiquitin (InterPro:IPR000626), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRP1 (TELOMERIC REPEAT BINDING PROTEIN 1); DNA binding / double-stranded telomeric DNA binding (TAIR:AT5G59430.4); Has 158 Blast hits to 150 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT3G46590.1p  transcript_id AT3G46590.1  protein_id AT3G46590.1p  transcript_id AT3G46590.1  
At3g46600	chr3:017158048	0.0	W/17158048-17159799	AT3G46600.1  CDS  go_component cellular_component|GO:0005575||ND  go_process response to chitin|GO:0010200|17722694|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product scarecrow transcription factor family protein  note scarecrow transcription factor family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to chitin, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: scarecrow-like transcription factor 11 (SCL11) (TAIR:AT5G59450.1); Has 1351 Blast hits to 1311 proteins in 188 species: Archae - 0; Bacteria - 3; Metazoa - 2; Fungi - 0; Plants - 1346; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G46600.1p  transcript_id AT3G46600.1  protein_id AT3G46600.1p  transcript_id AT3G46600.1  
At3g46600	chr3:017158052	0.0	W/17158052-17158209,17158302-17159799	AT3G46600.3  CDS  go_component cellular_component|GO:0005575||ND  go_process response to chitin|GO:0010200|17722694|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product scarecrow transcription factor family protein  note scarecrow transcription factor family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to chitin, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202), Methionine sulphoxide reductase A (InterPro:IPR002569); BEST Arabidopsis thaliana protein match is: scarecrow-like transcription factor 11 (SCL11) (TAIR:AT5G59450.1); Has 1326 Blast hits to 1308 proteins in 187 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 1323; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G46600.3p  transcript_id AT3G46600.3  protein_id AT3G46600.3p  transcript_id AT3G46600.3  
At3g46600	chr3:017158379	0.0	W/17158379-17158381,17158441-17159799	AT3G46600.2  CDS  go_component cellular_component|GO:0005575||ND  go_process response to chitin|GO:0010200|17722694|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product scarecrow transcription factor family protein  note scarecrow transcription factor family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to chitin, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: scarecrow-like transcription factor 11 (SCL11) (TAIR:AT5G59450.1); Has 1326 Blast hits to 1308 proteins in 187 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 1323; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G46600.2p  transcript_id AT3G46600.2  protein_id AT3G46600.2p  transcript_id AT3G46600.2  
At3g46610	chr3:017160224	0.0	C/17160224-17162221	AT3G46610.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G14350.1); Has 16155 Blast hits to 5026 proteins in 163 species: Archae - 3; Bacteria - 20; Metazoa - 276; Fungi - 236; Plants - 14815; Viruses - 0; Other Eukaryotes - 805 (source: NCBI BLink).  protein_id AT3G46610.1p  transcript_id AT3G46610.1  protein_id AT3G46610.1p  transcript_id AT3G46610.1  
At3g46613	chr3:017165791	0.0	W/17165791-17166225	AT3G46613.1  CDS  gene_syn DEVIL 15, DVL15, ROTUNDIFOLIA LIKE 4, RTFL4  gene RTFL4  function Encodes a small is a member of an angiosperm specific gene family.  go_component cellular_component|GO:0005575||ND  go_process shoot development|GO:0048367|14871303|ISS  go_function molecular_function|GO:0003674||ND  product RTFL4 (ROTUNDIFOLIA LIKE 4)  note ROTUNDIFOLIA LIKE 4 (RTFL4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: shoot development; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); BEST Arabidopsis thaliana protein match is: RTFL5 (ROTUNDIFOLIA LIKE 5) (TAIR:AT5G59510.1); Has 3372 Blast hits to 380 proteins in 85 species: Archae - 0; Bacteria - 43; Metazoa - 1300; Fungi - 264; Plants - 80; Viruses - 0; Other Eukaryotes - 1685 (source: NCBI BLink).  protein_id AT3G46613.1p  transcript_id AT3G46613.1  protein_id AT3G46613.1p  transcript_id AT3G46613.1  
At3g46614	chr3:017170381	0.0	C/17170381-17171044	AT3G46614.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G46614.1  
At3g46616	chr3:017173732	0.0	C/17173732-17173752,17173557-17173651,17173444-17173480	AT3G46616.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT3G46616.1p  transcript_id AT3G46616.1  protein_id AT3G46616.1p  transcript_id AT3G46616.1  
At3g46620	chr3:017178837	0.0	C/17178837-17180024	AT3G46620.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process response to chitin|GO:0010200|17722694|IEP  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Protein of unknown function DUF1117 (InterPro:IPR010543); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G59550.1); Has 5953 Blast hits to 5931 proteins in 209 species: Archae - 0; Bacteria - 6; Metazoa - 2088; Fungi - 498; Plants - 2518; Viruses - 31; Other Eukaryotes - 812 (source: NCBI BLink).  protein_id AT3G46620.1p  transcript_id AT3G46620.1  protein_id AT3G46620.1p  transcript_id AT3G46620.1  
At3g46630	chr3:017182009	0.0	C/17182009-17182346,17181497-17181611,17181138-17181308	AT3G46630.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: defective chloroplasts and leaves protein-related / DCL protein-related (TAIR:AT1G45230.1); Has 102 Blast hits to 102 proteins in 23 species: Archae - 0; Bacteria - 7; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT3G46630.1p  transcript_id AT3G46630.1  protein_id AT3G46630.1p  transcript_id AT3G46630.1  
At3g46640	chr3:017183248	0.0	W/17183248-17184219	AT3G46640.1  CDS  gene_syn LUX, LUX ARRHYTHMO, PCL1, PHYTOCLOCK 1  gene PCL1  function Encodes a myb family transcription factor with a single Myb DNA-binding domain (type SHAQKYF) that is unique to plants and is essential for circadian rhythms, specifically for transcriptional regulation within the circadian clock. LUX is required for normal rhythmic expression of multiple clock outputs in both constant light and darkness. It is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter.  go_process circadian rhythm|GO:0007623|16006522|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product PCL1 (PHYTOCLOCK 1); DNA binding / transcription factor  note PHYTOCLOCK 1 (PCL1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: circadian rhythm, regulation of transcription; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT5G59570.1); Has 952 Blast hits to 952 proteins in 52 species: Archae - 0; Bacteria - 29; Metazoa - 18; Fungi - 7; Plants - 883; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT3G46640.1p  transcript_id AT3G46640.1  protein_id AT3G46640.1p  transcript_id AT3G46640.1  
At3g46640	chr3:017183248	0.0	W/17183248-17184219	AT3G46640.2  CDS  gene_syn LUX, LUX ARRHYTHMO, PCL1, PHYTOCLOCK 1  gene PCL1  function Encodes a myb family transcription factor with a single Myb DNA-binding domain (type SHAQKYF) that is unique to plants and is essential for circadian rhythms, specifically for transcriptional regulation within the circadian clock. LUX is required for normal rhythmic expression of multiple clock outputs in both constant light and darkness. It is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter.  go_process circadian rhythm|GO:0007623|16006522|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product PCL1 (PHYTOCLOCK 1); DNA binding / transcription factor  note PHYTOCLOCK 1 (PCL1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: circadian rhythm, regulation of transcription; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT5G59570.1); Has 952 Blast hits to 952 proteins in 52 species: Archae - 0; Bacteria - 29; Metazoa - 18; Fungi - 7; Plants - 883; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT3G46640.2p  transcript_id AT3G46640.2  protein_id AT3G46640.2p  transcript_id AT3G46640.2  
At3g46650	chr3:017187380	0.0	C/17187380-17187812,17186590-17187244,17185561-17185780	AT3G46650.1  CDS  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glycosyltransferase/ transferase, transferring glycosyl groups  note UDP-glycosyltransferase/ transferase, transferring glycosyl groups; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT3G46680.1); Has 4025 Blast hits to 4005 proteins in 288 species: Archae - 0; Bacteria - 144; Metazoa - 1154; Fungi - 14; Plants - 2683; Viruses - 9; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT3G46650.1p  transcript_id AT3G46650.1  protein_id AT3G46650.1p  transcript_id AT3G46650.1  
At3g46658	chr3:017188870	0.0	W/17188870-17191167	AT3G46658.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT3G46660  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G46658.1  
At3g46660	chr3:017190367	0.0	C/17190367-17190862,17189406-17190286	AT3G46660.1  CDS  gene_syn UDP-GLUCOSYL TRANSFERASE 76E12, UGT76E12  gene UGT76E12  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function quercetin 3-O-glucosyltransferase activity|GO:0080043|15352060|IDA  go_function quercetin 7-O-glucosyltransferase activity|GO:0080044|15352060|IDA  product UGT76E12 (UDP-GLUCOSYL TRANSFERASE 76E12); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ quercetin 7-O-glucosyltransferase/ transferase, transferring glycosyl groups  note UDP-GLUCOSYL TRANSFERASE 76E12 (UGT76E12); FUNCTIONS IN: quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT76E11 (UDP-GLUCOSYL TRANSFERASE 76E11); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ quercetin 7-O-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT3G46670.1); Has 4906 Blast hits to 4874 proteins in 316 species: Archae - 0; Bacteria - 143; Metazoa - 1916; Fungi - 13; Plants - 2719; Viruses - 92; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT3G46660.1p  transcript_id AT3G46660.1  protein_id AT3G46660.1p  transcript_id AT3G46660.1  
At3g46666	chr3:017191598	0.0	C/17191598-17191852	AT3G46666.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G46666.1p  transcript_id AT3G46666.1  protein_id AT3G46666.1p  transcript_id AT3G46666.1  
At3g46668	chr3:017191668	0.0	W/17191668-17195280	AT3G46668.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G46668.1  
At3g46670	chr3:017193750	0.0	C/17193750-17194227,17192795-17193672	AT3G46670.1  CDS  gene_syn UDP-GLUCOSYL TRANSFERASE 76E11, UGT76E11  gene UGT76E11  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function quercetin 3-O-glucosyltransferase activity|GO:0080043|15352060|IDA  go_function quercetin 7-O-glucosyltransferase activity|GO:0080044|15352060|IDA  product UGT76E11 (UDP-GLUCOSYL TRANSFERASE 76E11); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ quercetin 7-O-glucosyltransferase/ transferase, transferring glycosyl groups  note UDP-GLUCOSYL TRANSFERASE 76E11 (UGT76E11); FUNCTIONS IN: quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT76E12 (UDP-GLUCOSYL TRANSFERASE 76E12); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ quercetin 7-O-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT3G46660.1); Has 4780 Blast hits to 4752 proteins in 309 species: Archae - 0; Bacteria - 134; Metazoa - 1857; Fungi - 16; Plants - 2685; Viruses - 61; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT3G46670.1p  transcript_id AT3G46670.1  protein_id AT3G46670.1p  transcript_id AT3G46670.1  
At3g46680	chr3:017196260	0.0	C/17196260-17196743,17195318-17196183	AT3G46680.1  CDS  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT3G46690.1); Has 4688 Blast hits to 4669 proteins in 311 species: Archae - 0; Bacteria - 117; Metazoa - 1808; Fungi - 14; Plants - 2657; Viruses - 68; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT3G46680.1p  transcript_id AT3G46680.1  protein_id AT3G46680.1p  transcript_id AT3G46680.1  
At3g46690	chr3:017198717	0.0	C/17198717-17199197,17197760-17198637	AT3G46690.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT3G46680.1); Has 4780 Blast hits to 4754 proteins in 319 species: Archae - 0; Bacteria - 156; Metazoa - 1823; Fungi - 16; Plants - 2681; Viruses - 82; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT3G46690.1p  transcript_id AT3G46690.1  protein_id AT3G46690.1p  transcript_id AT3G46690.1  
At3g46700	chr3:017201383	0.0	C/17201383-17201848,17200430-17201307	AT3G46700.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glycosyltransferase/ transferase, transferring glycosyl groups  note UDP-glycosyltransferase/ transferase, transferring glycosyl groups; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT3G46680.1); Has 4611 Blast hits to 4592 proteins in 298 species: Archae - 0; Bacteria - 128; Metazoa - 1724; Fungi - 9; Plants - 2660; Viruses - 66; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT3G46700.1p  transcript_id AT3G46700.1  protein_id AT3G46700.1p  transcript_id AT3G46700.1  
At3g46710	chr3:017206489	0.0	C/17206489-17209032	AT3G46710.1  CDS  go_process apoptosis|GO:0006915||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative  note disease resistance protein (CC-NBS-LRR class), putative; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS class), putative (TAIR:AT3G46730.1); Has 9759 Blast hits to 9451 proteins in 354 species: Archae - 4; Bacteria - 306; Metazoa - 418; Fungi - 38; Plants - 8934; Viruses - 6; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT3G46710.1p  transcript_id AT3G46710.1  protein_id AT3G46710.1p  transcript_id AT3G46710.1  
At3g46720	chr3:017211871	0.0	C/17211871-17212348,17210930-17211795	AT3G46720.1  CDS  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, hypocotyl, flower, root; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT3G46690.1); Has 4581 Blast hits to 4560 proteins in 297 species: Archae - 0; Bacteria - 117; Metazoa - 1697; Fungi - 9; Plants - 2672; Viruses - 65; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT3G46720.1p  transcript_id AT3G46720.1  protein_id AT3G46720.1p  transcript_id AT3G46720.1  
At3g46730	chr3:017213069	0.0	C/17213069-17215612	AT3G46730.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process apoptosis|GO:0006915||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS class), putative  note disease resistance protein (CC-NBS class), putative; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182); BEST Arabidopsis thaliana protein match is: RPP13 (RECOGNITION OF PERONOSPORA PARASITICA 13); ATP binding (TAIR:AT3G46530.1); Has 10031 Blast hits to 9692 proteins in 352 species: Archae - 6; Bacteria - 295; Metazoa - 367; Fungi - 58; Plants - 9230; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT3G46730.1p  transcript_id AT3G46730.1  protein_id AT3G46730.1p  transcript_id AT3G46730.1  
At3g46740	chr3:017218106	0.0	C/17218106-17219296,17217606-17217827,17217410-17217517,17217099-17217290,17216772-17217020,17216431-17216685,17216104-17216343	AT3G46740.1  CDS  gene_syn TOC75-III, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 75-III  gene TOC75-III  function Component of the translocon outer membrane (TOC) complex. Forms the outer envelope translocation channel (beta-barrel). Plays a role in preprotein conductance. Imported into chloroplast. Expressed in young dividing photosynthetic tissues. Knockout mutants are embryo lethal with arrested development at the two-cell stage. Knockout mutants have abnormal etioplasts.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||IEA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_component toc complex|GO:0010006|10646606|ISS  go_component integral to chloroplast outer membrane|GO:0031359|15908591|IDA  go_process chloroplast organization|GO:0009658|10998188|ISS  go_process protein targeting to chloroplast|GO:0045036|12951325|IDA  go_process embryonic morphogenesis|GO:0048598|15908591|IMP  product TOC75-III (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 75-III); P-P-bond-hydrolysis-driven protein transmembrane transporter  note TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 75-III (TOC75-III); FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein targeting to chloroplast, chloroplast organization, embryonic morphogenesis; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial surface antigen (D15) (InterPro:IPR000184), Chloroplast envelope protein translocase, IAP75 (InterPro:IPR005689), Surface antigen variable number (InterPro:IPR010827); BEST Arabidopsis thaliana protein match is: TOC75-IV (TAIR:AT4G09080.1); Has 3080 Blast hits to 1559 proteins in 255 species: Archae - 0; Bacteria - 599; Metazoa - 1279; Fungi - 73; Plants - 584; Viruses - 22; Other Eukaryotes - 523 (source: NCBI BLink).  protein_id AT3G46740.1p  transcript_id AT3G46740.1  protein_id AT3G46740.1p  transcript_id AT3G46740.1  
At3g46750	chr3:017219944	0.0	W/17219944-17220046,17220155-17220469,17220559-17221052,17221126-17221336,17221418-17221461	AT3G46750.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; Has 2417 Blast hits to 1790 proteins in 216 species: Archae - 6; Bacteria - 126; Metazoa - 1171; Fungi - 217; Plants - 99; Viruses - 8; Other Eukaryotes - 790 (source: NCBI BLink).  protein_id AT3G46750.1p  transcript_id AT3G46750.1  protein_id AT3G46750.1p  transcript_id AT3G46750.1  
At3g46760	chr3:017222027	0.0	W/17222027-17223040	AT3G46760.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, flower, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: lectin protein kinase family protein (TAIR:AT5G59270.1); Has 76193 Blast hits to 75303 proteins in 1913 species: Archae - 44; Bacteria - 5964; Metazoa - 33391; Fungi - 5873; Plants - 17560; Viruses - 376; Other Eukaryotes - 12985 (source: NCBI BLink).  protein_id AT3G46760.1p  transcript_id AT3G46760.1  protein_id AT3G46760.1p  transcript_id AT3G46760.1  
At3g46770	chr3:017224064	0.0	W/17224064-17224171,17224420-17224777,17224870-17224982,17225065-17225316	AT3G46770.1  CDS  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcriptional factor B3 family protein  note transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT5G60140.1); Has 69 Blast hits to 66 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G46770.1p  transcript_id AT3G46770.1  protein_id AT3G46770.1p  transcript_id AT3G46770.1  
At3g46770	chr3:017224510	0.0	W/17224510-17224777,17224870-17224982,17225065-17225316	AT3G46770.2  CDS  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcriptional factor B3 family protein  note transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT5G60130.1); Has 30 Blast hits to 29 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G46770.2p  transcript_id AT3G46770.2  protein_id AT3G46770.2p  transcript_id AT3G46770.2  
At3g46780	chr3:017228766	0.0	W/17228766-17229182,17229460-17229927,17230054-17230122,17230274-17230332,17230502-17231021	AT3G46780.1  CDS  gene_syn PLASTID TRANSCRIPTIONALLY ACTIVE 16, PTAC16  gene PTAC16  go_component nucleoid|GO:0009295|16326926|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_component plastid chromosome|GO:0009508|16326926|IDA  product PTAC16 (PLASTID TRANSCRIPTIONALLY ACTIVE 16); binding / catalytic  note PLASTID TRANSCRIPTIONALLY ACTIVE 16 (PTAC16); FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: in 6 components; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: binding / catalytic/ coenzyme binding (TAIR:AT3G18890.1); Has 939 Blast hits to 790 proteins in 244 species: Archae - 1; Bacteria - 344; Metazoa - 68; Fungi - 66; Plants - 99; Viruses - 22; Other Eukaryotes - 339 (source: NCBI BLink).  protein_id AT3G46780.1p  transcript_id AT3G46780.1  protein_id AT3G46780.1p  transcript_id AT3G46780.1  
At3g46790	chr3:017231975	0.0	C/17231975-17233948	AT3G46790.1  CDS  gene_syn CHLORORESPIRATORY REDUCTION 2, CRR2  gene CRR2  function Encodes a member of a PCMP (plant combinatorial and modular protein) family (PCMP-H subfamily) with 9 pentatricopeptide (PPR) repeats. The protein is involved the intergenic processing of chloroplast RNA between rps7 and ndhB, which is essential for ndhB translation.  go_component chloroplast|GO:0009507|14617084|ISS  go_process chloroplast RNA processing|GO:0031425|14617084|IMP  go_process polycistronic mRNA processing|GO:0031426|14617084|IMP  product CRR2 (CHLORORESPIRATORY REDUCTION 2)  note CHLORORESPIRATORY REDUCTION 2 (CRR2); INVOLVED IN: chloroplast RNA processing, polycistronic mRNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G57430.1); Has 13259 Blast hits to 4978 proteins in 169 species: Archae - 0; Bacteria - 4; Metazoa - 88; Fungi - 38; Plants - 12912; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).  protein_id AT3G46790.1p  transcript_id AT3G46790.1  protein_id AT3G46790.1p  transcript_id AT3G46790.1  
At3g46800	chr3:017234494	0.0	C/17234494-17236542	AT3G46800.1  CDS  go_process intracellular signaling cascade|GO:0007242||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular signaling cascade; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT3G46810.1); Has 1549 Blast hits to 576 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 75; Fungi - 9; Plants - 1448; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT3G46800.1p  transcript_id AT3G46800.1  protein_id AT3G46800.1p  transcript_id AT3G46800.1  
At3g46810	chr3:017238472	0.0	C/17238472-17240532	AT3G46810.1  CDS  go_process intracellular signaling cascade|GO:0007242||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular signaling cascade; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT3G46800.1); Has 1395 Blast hits to 541 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 60; Fungi - 0; Plants - 1326; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G46810.1p  transcript_id AT3G46810.1  protein_id AT3G46810.1p  transcript_id AT3G46810.1  
At3g46820	chr3:017243788	0.0	C/17243788-17243992,17242706-17243265,17242447-17242620	AT3G46820.1  CDS  gene_syn TOPP5  gene TOPP5  function Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers.  go_component protein phosphatase type 1 complex|GO:0000164|7678768|ISS  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722|7678768|ISS  product TOPP5; protein serine/threonine phosphatase  note TOPP5; FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: protein phosphatase type 1 complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: TOPP2; protein serine/threonine phosphatase (TAIR:AT5G59160.3); Has 5512 Blast hits to 5373 proteins in 443 species: Archae - 49; Bacteria - 326; Metazoa - 2061; Fungi - 932; Plants - 614; Viruses - 12; Other Eukaryotes - 1518 (source: NCBI BLink).  protein_id AT3G46820.1p  transcript_id AT3G46820.1  protein_id AT3G46820.1p  transcript_id AT3G46820.1  
At3g46830	chr3:017248198	0.0	C/17248198-17248362,17246699-17247187	AT3G46830.1  CDS  gene_syn ARABIDOPSIS RAB GTPASE HOMOLOG A2C, ATRAB-A2C, ATRAB11A, ATRABA2C, RAB GTPASE HOMOLOG A2C, RAB-A2C  gene ATRABA2C  go_component plasma membrane|GO:0005886|17317660|IDA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_component endosome|GO:0005768|18239134|IDA  go_component cell plate|GO:0009504|18239134|IDA  go_function GTP binding|GO:0005525||ISS  product ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C); GTP binding  note ARABIDOPSIS RAB GTPASE HOMOLOG A2C (ATRABA2C); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: endosome, plasma membrane, cell plate; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: ATRABA2D (HOARABIDOPSIS RAB GTPASE HOMOLOG A2D); GTP binding (TAIR:AT5G59150.1); Has 23118 Blast hits to 23078 proteins in 640 species: Archae - 19; Bacteria - 105; Metazoa - 12740; Fungi - 3037; Plants - 2133; Viruses - 19; Other Eukaryotes - 5065 (source: NCBI BLink).  protein_id AT3G46830.1p  transcript_id AT3G46830.1  protein_id AT3G46830.1p  transcript_id AT3G46830.1  
At3g46840	chr3:017251011	0.0	W/17251011-17251109,17251213-17251307,17251413-17251504,17251637-17251889,17251986-17252493,17252595-17252689,17252771-17252986,17253067-17253178,17253247-17253454,17253575-17254113	AT3G46840.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product subtilase family protein  note subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT3G46850.1); Has 3586 Blast hits to 3224 proteins in 580 species: Archae - 92; Bacteria - 2063; Metazoa - 89; Fungi - 157; Plants - 860; Viruses - 0; Other Eukaryotes - 325 (source: NCBI BLink).  protein_id AT3G46840.1p  transcript_id AT3G46840.1  protein_id AT3G46840.1p  transcript_id AT3G46840.1  
At3g46850	chr3:017256338	0.0	W/17256338-17256433,17256536-17256630,17256740-17256831,17256953-17257205,17257297-17257807,17257902-17257996,17258078-17258293,17258380-17258491,17258580-17258787,17258910-17259442	AT3G46850.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product subtilase family protein  note subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT3G46840.1); Has 3407 Blast hits to 3226 proteins in 563 species: Archae - 91; Bacteria - 1876; Metazoa - 37; Fungi - 138; Plants - 870; Viruses - 0; Other Eukaryotes - 395 (source: NCBI BLink).  protein_id AT3G46850.1p  transcript_id AT3G46850.1  protein_id AT3G46850.1p  transcript_id AT3G46850.1  
At3g46860	chr3:017260234	0.0	W/17260234-17260294,17260403-17260599	AT3G46860.1  CDS  function Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.  go_function serine-type endopeptidase inhibitor activity|GO:0004867||IEA  go_component cellular_component|GO:0005575||ND  go_process defense response|GO:0006952|18674922|ISS  go_process response to wounding|GO:0009611||ISS  go_function serine-type endopeptidase inhibitor activity|GO:0004867||ISS  product serine protease inhibitor, potato inhibitor I-type family protein  note serine protease inhibitor, potato inhibitor I-type family protein; FUNCTIONS IN: serine-type endopeptidase inhibitor activity; INVOLVED IN: response to wounding, defense response; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I13, potato inhibitor I (InterPro:IPR000864); BEST Arabidopsis thaliana protein match is: protease inhibitor, putative (TAIR:AT2G38870.1); Has 73 Blast hits to 73 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G46860.1p  transcript_id AT3G46860.1  protein_id AT3G46860.1p  transcript_id AT3G46860.1  
At3g46870	chr3:017263011	0.0	W/17263011-17263394,17263633-17264022	AT3G46870.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62350.1); Has 3561 Blast hits to 1614 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 53; Plants - 3447; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT3G46870.1p  transcript_id AT3G46870.1  protein_id AT3G46870.1p  transcript_id AT3G46870.1  
At3g46875	chr3:017264580	0.0	W/17264580-17264661	AT3G46875.1  tRNA  gene_syn 67255.TRNA-SER-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT3G46875.1  
At3g46880	chr3:017265293	0.0	W/17265293-17265409,17265501-17265543,17265800-17265900,17265970-17266086,17266183-17266266	AT3G46880.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59080.1); Has 24 Blast hits to 24 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G46880.1p  transcript_id AT3G46880.1  protein_id AT3G46880.1p  transcript_id AT3G46880.1  
At3g46890	chr3:017266416	0.0	C/17266416-17267030	AT3G46890.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: MEE60 (maternal effect embryo arrest 60) (TAIR:AT5G05950.1); Has 61 Blast hits to 61 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G46890.1p  transcript_id AT3G46890.1  protein_id AT3G46890.1p  transcript_id AT3G46890.1  
At3g46900	chr3:017268887	0.0	W/17268887-17269363	AT3G46900.1  CDS  gene_syn COPT2  gene COPT2  function encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_process copper ion transport|GO:0006825||ISS  go_process high-affinity copper ion transport|GO:0015678|12650623|IGI  go_function copper ion transmembrane transporter activity|GO:0005375||ISS  go_function high affinity copper ion transmembrane transporter activity|GO:0015089|12650623|IGI  product COPT2; copper ion transmembrane transporter/ high affinity copper ion transmembrane transporter  note COPT2; FUNCTIONS IN: high affinity copper ion transmembrane transporter activity, copper ion transmembrane transporter activity; INVOLVED IN: copper ion transport, high-affinity copper ion transport; LOCATED IN: anchored to plasma membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Ctr copper transporter (InterPro:IPR007274); BEST Arabidopsis thaliana protein match is: copper transporter, putative (TAIR:AT2G26975.1); Has 321 Blast hits to 320 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 167; Fungi - 34; Plants - 81; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT3G46900.1p  transcript_id AT3G46900.1  protein_id AT3G46900.1p  transcript_id AT3G46900.1  
At3g46901	chr3:017271248	0.0	C/17271248-17271421	AT3G46901.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G46901.1p  transcript_id AT3G46901.1  protein_id AT3G46901.1p  transcript_id AT3G46901.1  
At3g46904	chr3:017273696	0.0	W/17273696-17273806	AT3G46904.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G46904.1p  transcript_id AT3G46904.1  protein_id AT3G46904.1p  transcript_id AT3G46904.1  
At3g46910	chr3:017278636	0.0	W/17278636-17278687,17278772-17278884,17278965-17279302,17279412-17279652	AT3G46910.1  CDS  go_component cullin-RING ubiquitin ligase complex|GO:0031461||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin protein ligase binding|GO:0031625||IEA  product ubiquitin protein ligase binding  note ubiquitin protein ligase binding; FUNCTIONS IN: ubiquitin protein ligase binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cullin-RING ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: Cullin, N-terminal region (InterPro:IPR001373), Cullin repeat-like (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: CUL4 (CULLIN4); protein binding / ubiquitin-protein ligase (TAIR:AT5G46210.1); Has 362 Blast hits to 362 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 246; Fungi - 37; Plants - 64; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT3G46910.1p  transcript_id AT3G46910.1  protein_id AT3G46910.1p  transcript_id AT3G46910.1  
At3g46911	chr3:017279711	0.0	W/17279711-17280176	AT3G46911.1  pseudogenic_transcript  pseudo  function pseudogene of CUL4 (protein binding / ubiquitin-protein ligase)  
At3g46920	chr3:017282520	0.0	C/17282520-17284857,17282235-17282467,17282081-17282152,17281857-17282009,17281593-17281756,17281351-17281498,17280884-17281006,17280704-17280791,17280430-17280626	AT3G46920.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, protein kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G16270.1); Has 83354 Blast hits to 82275 proteins in 3383 species: Archae - 53; Bacteria - 6385; Metazoa - 38452; Fungi - 6355; Plants - 17795; Viruses - 390; Other Eukaryotes - 13924 (source: NCBI BLink).  protein_id AT3G46920.1p  transcript_id AT3G46920.1  protein_id AT3G46920.1p  transcript_id AT3G46920.1  
At3g46930	chr3:017286160	0.0	W/17286160-17286274,17286395-17286957,17287110-17287559,17287733-17288032	AT3G46930.1  CDS  gene_syn F13I12.1  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G58950.1); Has 95732 Blast hits to 94542 proteins in 3822 species: Archae - 53; Bacteria - 7974; Metazoa - 42905; Fungi - 8003; Plants - 19104; Viruses - 490; Other Eukaryotes - 17203 (source: NCBI BLink).  protein_id AT3G46930.1p  transcript_id AT3G46930.1  protein_id AT3G46930.1p  transcript_id AT3G46930.1  
At3g46940	chr3:017288367	0.0	C/17288367-17288867	AT3G46940.1  CDS  gene_syn F13I12.6  go_process dUTP metabolic process|GO:0046080||IEA  go_function dUTP diphosphatase activity|GO:0004170||IEA  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process 2 -deoxyribonucleotide metabolic process|GO:0009394||ISS  go_function dUTP diphosphatase activity|GO:0004170||ISS  product deoxyuridine 5 -triphosphate nucleotidohydrolase family  note deoxyuridine 5 -triphosphate nucleotidohydrolase family; FUNCTIONS IN: hydrolase activity, dUTP diphosphatase activity; INVOLVED IN: 2 -deoxyribonucleotide metabolic process, dUTP metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DeoxyUTP pyrophosphatase subfamily 1 (InterPro:IPR008181), DeoxyUTP pyrophosphatase (InterPro:IPR008180); Has 5469 Blast hits to 5455 proteins in 1432 species: Archae - 13; Bacteria - 2270; Metazoa - 201; Fungi - 106; Plants - 30; Viruses - 721; Other Eukaryotes - 2128 (source: NCBI BLink).  protein_id AT3G46940.1p  transcript_id AT3G46940.1  protein_id AT3G46940.1p  transcript_id AT3G46940.1  
At3g46950	chr3:017289452	0.0	W/17289452-17290804	AT3G46950.1  CDS  gene_syn F13I12.5  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial transcription termination factor-related / mTERF-related  note mitochondrial transcription termination factor-related / mTERF-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: mitochondrial transcription termination factor-related / mTERF-related (TAIR:AT1G61960.1); Has 548 Blast hits to 419 proteins in 29 species: Archae - 0; Bacteria - 2; Metazoa - 35; Fungi - 2; Plants - 505; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G46950.1p  transcript_id AT3G46950.1  protein_id AT3G46950.1p  transcript_id AT3G46950.1  
At3g46960	chr3:017297933	0.0	C/17297933-17298067,17297153-17297410,17296726-17296986,17296556-17296624,17296380-17296458,17296097-17296287,17295914-17296021,17295709-17295810,17295423-17295623,17295178-17295288,17294814-17294881,17294347-17294716,17294089-17294244,17293880-17293990,17293655-17293708,17293233-17293490,17293021-17293130,17292678-17292831,17292154-17292607,17291852-17292066,17291518-17291756,17291299-17291425,17291004-17291216	AT3G46960.1  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides|GO:0016818||IEA  go_process biological_process|GO:0008150||ND  go_function ATP-dependent helicase activity|GO:0008026||ISS  product ATP binding / ATP-dependent helicase/ helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding  note ATP binding / ATP-dependent helicase/ helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding; FUNCTIONS IN: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DSH, C-terminal (InterPro:IPR012961), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), RNA helicase, ATP-dependent, SK12/DOB1 (InterPro:IPR016438), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: HEN2 (hua enhancer 2); ATP-dependent helicase/ RNA helicase (TAIR:AT2G06990.1); Has 7311 Blast hits to 5276 proteins in 657 species: Archae - 463; Bacteria - 1480; Metazoa - 1237; Fungi - 1015; Plants - 265; Viruses - 46; Other Eukaryotes - 2805 (source: NCBI BLink).  protein_id AT3G46960.1p  transcript_id AT3G46960.1  protein_id AT3G46960.1p  transcript_id AT3G46960.1  
At3g46970	chr3:017305908	0.0	C/17305908-17306111,17305542-17305721,17305282-17305458,17305116-17305201,17304772-17304961,17304587-17304679,17304149-17304333,17303946-17304063,17303745-17303873,17303437-17303655,17303151-17303354,17302744-17302902,17302215-17302478,17301871-17302061,17301625-17301751	AT3G46970.1  CDS  gene_syn ALPHA-GLUCAN PHOSPHORYLASE 2, ATPHS2, PHS2  gene PHS2  function Encodes a cytosolic alpha-glucan phosphorylase. In vitro, the enzyme has a preference for branched polysaccharides, such as glycogen.  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytosol|GO:0005829|15173560|TAS  go_process response to water deprivation|GO:0009414|15173560|IMP  go_function phosphorylase activity|GO:0004645|16980562|IDA  go_function phosphorylase activity|GO:0004645||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product PHS2 (ALPHA-GLUCAN PHOSPHORYLASE 2); phosphorylase/ transferase, transferring glycosyl groups  note ALPHA-GLUCAN PHOSPHORYLASE 2 (PHS2); FUNCTIONS IN: phosphorylase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: response to cadmium ion, response to water deprivation; LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 35 (InterPro:IPR000811), Glycogen/starch/alpha-glucan phosphorylase (InterPro:IPR011833); BEST Arabidopsis thaliana protein match is: glucan phosphorylase, putative (TAIR:AT3G29320.1); Has 3734 Blast hits to 3693 proteins in 980 species: Archae - 57; Bacteria - 2129; Metazoa - 462; Fungi - 85; Plants - 172; Viruses - 2; Other Eukaryotes - 827 (source: NCBI BLink).  protein_id AT3G46970.1p  transcript_id AT3G46970.1  protein_id AT3G46970.1p  transcript_id AT3G46970.1  
At3g46980	chr3:017309438	0.0	C/17309438-17309899,17309099-17309325,17308627-17308990,17308418-17308462,17308186-17308332,17307859-17308023	AT3G46980.2  CDS  gene_syn PHOSPHATE TRANSPORTER 4;3, PHT4;3  gene PHT4;3  function Encodes an inorganic phosphate transporter (PHT4;3).  go_component membrane|GO:0016020||ISS  go_function inorganic phosphate transmembrane transporter activity|GO:0005315|18086223|IDA  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function organic anion transmembrane transporter activity|GO:0008514||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product transporter-related  note PHOSPHATE TRANSPORTER 4;3 (PHT4;3); FUNCTIONS IN: organic anion transmembrane transporter activity, carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, inorganic phosphate transmembrane transporter activity; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: PHT4;2 (PHOSPHATE TRANSPORTER 4;2); carbohydrate transmembrane transporter/ inorganic phosphate transmembrane transporter/ organic anion transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT2G38060.1); Has 21534 Blast hits to 21324 proteins in 1332 species: Archae - 224; Bacteria - 16011; Metazoa - 2590; Fungi - 434; Plants - 253; Viruses - 0; Other Eukaryotes - 2022 (source: NCBI BLink).  protein_id AT3G46980.2p  transcript_id AT3G46980.2  protein_id AT3G46980.2p  transcript_id AT3G46980.2  
At3g46980	chr3:017309438	0.0	C/17309438-17309899,17309099-17309325,17308627-17308990,17308418-17308462,17308186-17308332,17307886-17308023,17307776-17307809,17307416-17307595,17307294-17307298	AT3G46980.1  CDS  gene_syn PHOSPHATE TRANSPORTER 4;3, PHT4;3  gene PHT4;3  function Encodes an inorganic phosphate transporter (PHT4;3).  go_component membrane|GO:0016020||ISS  go_function inorganic phosphate transmembrane transporter activity|GO:0005315|18086223|IDA  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function organic anion transmembrane transporter activity|GO:0008514||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product transporter-related  note PHOSPHATE TRANSPORTER 4;3 (PHT4;3); FUNCTIONS IN: organic anion transmembrane transporter activity, carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, inorganic phosphate transmembrane transporter activity; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: PHT4;2 (PHOSPHATE TRANSPORTER 4;2); carbohydrate transmembrane transporter/ inorganic phosphate transmembrane transporter/ organic anion transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT2G38060.1); Has 22459 Blast hits to 22212 proteins in 1366 species: Archae - 254; Bacteria - 16634; Metazoa - 2715; Fungi - 448; Plants - 258; Viruses - 0; Other Eukaryotes - 2150 (source: NCBI BLink).  protein_id AT3G46980.1p  transcript_id AT3G46980.1  protein_id AT3G46980.1p  transcript_id AT3G46980.1  
At3g46980	chr3:017309438	0.0	C/17309438-17309899,17309099-17309325,17308627-17308990,17308418-17308462,17308186-17308332,17307886-17308023,17307776-17307809,17307416-17307595,17307294-17307301	AT3G46980.3  CDS  gene_syn PHOSPHATE TRANSPORTER 4;3, PHT4;3  gene PHT4;3  function Encodes an inorganic phosphate transporter (PHT4;3).  go_component membrane|GO:0016020||ISS  go_function inorganic phosphate transmembrane transporter activity|GO:0005315|18086223|IDA  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function organic anion transmembrane transporter activity|GO:0008514||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product transporter-related  note PHOSPHATE TRANSPORTER 4;3 (PHT4;3); FUNCTIONS IN: organic anion transmembrane transporter activity, carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, inorganic phosphate transmembrane transporter activity; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: PHT4;2 (PHOSPHATE TRANSPORTER 4;2); carbohydrate transmembrane transporter/ inorganic phosphate transmembrane transporter/ organic anion transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT2G38060.1); Has 22460 Blast hits to 22213 proteins in 1366 species: Archae - 254; Bacteria - 16634; Metazoa - 2714; Fungi - 450; Plants - 258; Viruses - 0; Other Eukaryotes - 2150 (source: NCBI BLink).  protein_id AT3G46980.3p  transcript_id AT3G46980.3  protein_id AT3G46980.3p  transcript_id AT3G46980.3  
At3g46990	chr3:017311901	0.0	W/17311901-17313544	AT3G46990.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF740 (InterPro:IPR008004); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58930.1); Has 183 Blast hits to 183 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 71; Fungi - 5; Plants - 52; Viruses - 1; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT3G46990.1p  transcript_id AT3G46990.1  protein_id AT3G46990.1p  transcript_id AT3G46990.1  
At3g47000	chr3:017316374	0.0	C/17316374-17316539,17316071-17316275,17315697-17315787,17315457-17315602,17315124-17315367,17314937-17315041,17314654-17314836,17314380-17314581,17313811-17314295	AT3G47000.1  CDS  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_component cellular_component|GO:0005575||ND  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 3 protein  note glycosyl hydrolase family 3 protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT3G47010.1); Has 6353 Blast hits to 5926 proteins in 906 species: Archae - 20; Bacteria - 3224; Metazoa - 6; Fungi - 919; Plants - 287; Viruses - 0; Other Eukaryotes - 1897 (source: NCBI BLink).  protein_id AT3G47000.1p  transcript_id AT3G47000.1  protein_id AT3G47000.1p  transcript_id AT3G47000.1  
At3g47010	chr3:017319350	0.0	C/17319350-17319518,17319034-17319238,17318589-17318679,17318367-17318512,17318037-17318280,17317847-17317951,17317594-17317776,17317317-17317518,17316758-17317242	AT3G47010.1  CDS  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_component cellular_component|GO:0005575||ND  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product hydrolase, hydrolyzing O-glycosyl compounds  note hydrolase, hydrolyzing O-glycosyl compounds; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 3 protein (TAIR:AT3G47000.1); Has 6130 Blast hits to 5733 proteins in 885 species: Archae - 20; Bacteria - 3085; Metazoa - 6; Fungi - 910; Plants - 282; Viruses - 0; Other Eukaryotes - 1827 (source: NCBI BLink).  protein_id AT3G47010.1p  transcript_id AT3G47010.1  protein_id AT3G47010.1p  transcript_id AT3G47010.1  
At3g47020	chr3:017319862	0.0	W/17319862-17320099,17320193-17320311,17320379-17320587,17320702-17321077	AT3G47020.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G47030.1); Has 338 Blast hits to 318 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 338; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G47020.1p  transcript_id AT3G47020.1  protein_id AT3G47020.1p  transcript_id AT3G47020.1  
At3g47021	chr3:017321211	0.0	W/17321211-17321519	AT3G47021.1  pseudogenic_transcript  pseudo  function Pseudogene of AT4G39930; unknown protein  
At3g47030	chr3:017322171	0.0	W/17322171-17323415	AT3G47030.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G47020.1); Has 460 Blast hits to 438 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 460; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G47030.1p  transcript_id AT3G47030.1  protein_id AT3G47030.1p  transcript_id AT3G47030.1  
At3g47040	chr3:017326940	0.0	C/17326940-17327105,17326602-17326806,17326314-17326479,17325879-17326024,17325550-17325793,17325362-17325466,17325096-17325278,17324813-17325014,17324231-17324724	AT3G47040.1  CDS  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_component cellular_component|GO:0005575||ND  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 3 protein  note glycosyl hydrolase family 3 protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, root; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 3 protein (TAIR:AT3G47000.1); Has 6289 Blast hits to 5866 proteins in 911 species: Archae - 20; Bacteria - 3203; Metazoa - 6; Fungi - 918; Plants - 283; Viruses - 0; Other Eukaryotes - 1859 (source: NCBI BLink).  protein_id AT3G47040.1p  transcript_id AT3G47040.1  protein_id AT3G47040.1p  transcript_id AT3G47040.1  
At3g47050	chr3:017330692	0.0	C/17330692-17330857,17330345-17330549,17330001-17330091,17329764-17329909,17329430-17329673,17329238-17329342,17328983-17329165,17328684-17328887	AT3G47050.2  CDS  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 3 protein  note glycosyl hydrolase family 3 protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: sperm cell, pollen tube; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 3 protein (TAIR:AT3G47000.1); Has 5388 Blast hits to 5388 proteins in 895 species: Archae - 18; Bacteria - 2840; Metazoa - 6; Fungi - 744; Plants - 262; Viruses - 0; Other Eukaryotes - 1518 (source: NCBI BLink).  protein_id AT3G47050.2p  transcript_id AT3G47050.2  protein_id AT3G47050.2p  transcript_id AT3G47050.2  
At3g47050	chr3:017330692	0.0	C/17330692-17330857,17330345-17330549,17330001-17330091,17329764-17329909,17329430-17329673,17329238-17329342,17328983-17329165,17328692-17328887,17328092-17328594	AT3G47050.1  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 3 protein  note glycosyl hydrolase family 3 protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: vacuole; EXPRESSED IN: sperm cell, pollen tube; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 3 protein (TAIR:AT3G47000.1); Has 6186 Blast hits to 5772 proteins in 904 species: Archae - 20; Bacteria - 3108; Metazoa - 6; Fungi - 917; Plants - 284; Viruses - 0; Other Eukaryotes - 1851 (source: NCBI BLink).  protein_id AT3G47050.1p  transcript_id AT3G47050.1  protein_id AT3G47050.1p  transcript_id AT3G47050.1  
At3g47060	chr3:017332999	0.0	W/17332999-17333823,17333951-17334013,17334089-17334223,17334338-17334403,17334521-17334706,17334799-17334885,17334973-17335086,17335164-17335288,17335380-17335488,17335568-17335693,17335792-17336112,17336201-17336324,17336486-17336613	AT3G47060.1  CDS  gene_syn FtsH protease 7, ftsh7  gene ftsh7  function encodes an FtsH protease that is localized to the chloroplast  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_process proteolysis|GO:0006508||IEA  go_process protein catabolic process|GO:0030163||IEA  go_component chloroplast|GO:0009507|14630971|IDA  go_function ATP-dependent peptidase activity|GO:0004176|11299370|ISS  go_function metallopeptidase activity|GO:0008237||ISS  go_function ATPase activity|GO:0016887||ISS  product ftsh7 (FtsH protease 7); ATP-dependent peptidase/ ATPase/ metallopeptidase  note FtsH protease 7 (ftsh7); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: proteolysis, protein catabolic process; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: ftsh9 (FtsH protease 9); ATP-dependent peptidase/ ATPase/ metallopeptidase (TAIR:AT5G58870.1); Has 28432 Blast hits to 26734 proteins in 1901 species: Archae - 888; Bacteria - 9609; Metazoa - 4081; Fungi - 2370; Plants - 1802; Viruses - 23; Other Eukaryotes - 9659 (source: NCBI BLink).  protein_id AT3G47060.1p  transcript_id AT3G47060.1  protein_id AT3G47060.1p  transcript_id AT3G47060.1  
At3g47070	chr3:017337205	0.0	C/17337205-17337507	AT3G47070.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast thylakoid membrane|GO:0009535|12524456|ISS  product unknown protein  note unknown protein; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G47070.1p  transcript_id AT3G47070.1  protein_id AT3G47070.1p  transcript_id AT3G47070.1  
At3g47080	chr3:017338829	0.0	C/17338829-17340129,17338415-17338661	AT3G47080.1  CDS  go_function binding|GO:0005488||IEA  product binding  note binding; FUNCTIONS IN: binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT2G29670.1); Has 258 Blast hits to 170 proteins in 23 species: Archae - 8; Bacteria - 77; Metazoa - 1; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT3G47080.1p  transcript_id AT3G47080.1  protein_id AT3G47080.1p  transcript_id AT3G47080.1  
At3g47090	chr3:017341978	0.0	C/17341978-17344645,17341512-17341873	AT3G47090.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT3G47580.1); Has 142774 Blast hits to 94252 proteins in 3436 species: Archae - 84; Bacteria - 11965; Metazoa - 57634; Fungi - 6496; Plants - 47795; Viruses - 290; Other Eukaryotes - 18510 (source: NCBI BLink).  protein_id AT3G47090.1p  transcript_id AT3G47090.1  protein_id AT3G47090.1p  transcript_id AT3G47090.1  
At3g47100	chr3:017345570	0.0	W/17345570-17345920	AT3G47100.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G47100.1p  transcript_id AT3G47100.1  protein_id AT3G47100.1p  transcript_id AT3G47100.1  
At3g47110	chr3:017347575	0.0	C/17347575-17350296,17347103-17347458	AT3G47110.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: EFR (EF-TU RECEPTOR); ATP binding / kinase/ protein serine/threonine kinase (TAIR:AT5G20480.1); Has 139064 Blast hits to 88744 proteins in 3367 species: Archae - 80; Bacteria - 11246; Metazoa - 56434; Fungi - 5881; Plants - 47746; Viruses - 249; Other Eukaryotes - 17428 (source: NCBI BLink).  protein_id AT3G47110.1p  transcript_id AT3G47110.1  protein_id AT3G47110.1p  transcript_id AT3G47110.1  
At3g47120	chr3:017352597	0.0	C/17352597-17352769,17352403-17352512,17352126-17352313,17351886-17352035,17351334-17351771	AT3G47120.1  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT5G19960.1); Has 20793 Blast hits to 16950 proteins in 655 species: Archae - 10; Bacteria - 1203; Metazoa - 11844; Fungi - 2178; Plants - 3009; Viruses - 0; Other Eukaryotes - 2549 (source: NCBI BLink).  protein_id AT3G47120.1p  transcript_id AT3G47120.1  protein_id AT3G47120.1p  transcript_id AT3G47120.1  
At3g47130	chr3:017353714	0.0	W/17353714-17353893,17353949-17354851	AT3G47130.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G47150.1); Has 367 Blast hits to 358 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 367; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G47130.1p  transcript_id AT3G47130.1  protein_id AT3G47130.1p  transcript_id AT3G47130.1  
At3g47140	chr3:017357026	0.0	W/17357026-17357065,17357167-17357801	AT3G47140.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein-related (TAIR:AT3G47130.1); Has 308 Blast hits to 302 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 308; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G47140.1p  transcript_id AT3G47140.1  protein_id AT3G47140.1p  transcript_id AT3G47140.1  
At3g47150	chr3:017358591	0.0	W/17358591-17359145,17359238-17359765	AT3G47150.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein-related (TAIR:AT3G47130.1); Has 766 Blast hits to 749 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 764; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G47150.1p  transcript_id AT3G47150.1  protein_id AT3G47150.1p  transcript_id AT3G47150.1  
At3g47160	chr3:017361812	0.0	C/17361812-17361879,17360995-17361145,17360846-17360912,17360524-17360758,17360238-17360454	AT3G47160.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G58787.1); Has 864 Blast hits to 863 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 394; Fungi - 32; Plants - 173; Viruses - 107; Other Eukaryotes - 158 (source: NCBI BLink).  protein_id AT3G47160.1p  transcript_id AT3G47160.1  protein_id AT3G47160.1p  transcript_id AT3G47160.1  
At3g47165	chr3:017363360	0.0	C/17363360-17363833	AT3G47165.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.4e-14 P-value blast match to GB:AAC24836 pol polyprotein (Ty1_Copia-element) (Candida albicans)  
At3g47170	chr3:017369843	0.0	C/17369843-17370494,17368672-17369426	AT3G47170.1  CDS  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT5G07080.1); Has 1176 Blast hits to 1170 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 19; Plants - 1156; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G47170.1p  transcript_id AT3G47170.1  protein_id AT3G47170.1p  transcript_id AT3G47170.1  
At3g47180	chr3:017372821	0.0	C/17372821-17373453	AT3G47180.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G19910.1); Has 4824 Blast hits to 4709 proteins in 210 species: Archae - 0; Bacteria - 30; Metazoa - 1696; Fungi - 230; Plants - 1989; Viruses - 36; Other Eukaryotes - 843 (source: NCBI BLink).  protein_id AT3G47180.1p  transcript_id AT3G47180.1  protein_id AT3G47180.1p  transcript_id AT3G47180.1  
At3g47190	chr3:017375584	0.0	C/17375584-17376032,17374820-17375138,17374513-17374740	AT3G47190.1  CDS  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process ethylene biosynthetic process|GO:0009693||ISS  go_function 1-aminocyclopropane-1-carboxylate oxidase activity|GO:0009815||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate oxidase activity, oxidoreductase activity, iron ion binding; INVOLVED IN: ethylene biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT5G58660.1); Has 5116 Blast hits to 5106 proteins in 633 species: Archae - 0; Bacteria - 601; Metazoa - 109; Fungi - 378; Plants - 2979; Viruses - 0; Other Eukaryotes - 1049 (source: NCBI BLink).  protein_id AT3G47190.1p  transcript_id AT3G47190.1  protein_id AT3G47190.1p  transcript_id AT3G47190.1  
At3g47200	chr3:017377658	0.0	C/17377658-17379088	AT3G47200.1  CDS  go_component plasma membrane|GO:0005886|16618929|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G47250.3); Has 483 Blast hits to 448 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 483; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G47200.1p  transcript_id AT3G47200.1  protein_id AT3G47200.1p  transcript_id AT3G47200.1  
At3g47200	chr3:017377658	0.0	C/17377658-17379088	AT3G47200.2  CDS  go_component plasma membrane|GO:0005886|16618929|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G47250.3); Has 483 Blast hits to 448 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 483; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G47200.2p  transcript_id AT3G47200.2  protein_id AT3G47200.2p  transcript_id AT3G47200.2  
At3g47210	chr3:017385545	0.0	W/17385545-17386969	AT3G47210.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: petal, inflorescence meristem, hypocotyl, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G47250.3); Has 703 Blast hits to 487 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 702; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G47210.1p  transcript_id AT3G47210.1  protein_id AT3G47210.1p  transcript_id AT3G47210.1  
At3g47220	chr3:017388119	0.0	W/17388119-17388427,17388549-17388748,17388830-17388968,17389054-17389352,17389471-17389591,17389750-17389899,17389978-17390061,17390150-17390443	AT3G47220.1  CDS  go_process lipid metabolic process|GO:0006629||IEA  go_process signal transduction|GO:0007165||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_function phosphoinositide phospholipase C activity|GO:0004435||IEA  go_function phospholipase C activity|GO:0004629||IEA  go_function phosphoric diester hydrolase activity|GO:0008081||IEA  go_process lipid metabolic process|GO:0006629||ISS  go_process signal transduction|GO:0007165||ISS  go_process intracellular signaling cascade|GO:0007242||ISS  go_function phosphoinositide phospholipase C activity|GO:0004435||ISS  product phosphoinositide-specific phospholipase C family protein  note phosphoinositide-specific phospholipase C family protein; FUNCTIONS IN: phosphoinositide phospholipase C activity, phospholipase C activity, phosphoric diester hydrolase activity; INVOLVED IN: signal transduction, intracellular signaling cascade, lipid metabolic process; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific , X region (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phospholipase C, phosphoinositol-specific, C-terminal (PLC) (InterPro:IPR001192), C2 calcium-dependent membrane targeting (InterPro:IPR000008), Phospholipase C, phosphatidylinositol-specific, Y domain (InterPro:IPR001711); BEST Arabidopsis thaliana protein match is: phosphoinositide-specific phospholipase C family protein (TAIR:AT3G47290.1); Has 2090 Blast hits to 1481 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 1610; Fungi - 144; Plants - 181; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink).  protein_id AT3G47220.1p  transcript_id AT3G47220.1  protein_id AT3G47220.1p  transcript_id AT3G47220.1  
At3g47230	chr3:017392099	0.0	C/17392099-17393699	AT3G47230.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G12505.1); contains domain no description (G3D.3.50.60.10); contains domain Clavaminate synthase-like (SSF51197)  
At3g47240	chr3:017393861	0.0	C/17393861-17394988	AT3G47240.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G54926.1)  
At3g47250	chr3:017400124	0.0	C/17400124-17401566	AT3G47250.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G47200.2); Has 496 Blast hits to 450 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 496; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G47250.1p  transcript_id AT3G47250.1  protein_id AT3G47250.1p  transcript_id AT3G47250.1  
At3g47250	chr3:017400124	0.0	C/17400124-17401566	AT3G47250.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G47200.2); Has 496 Blast hits to 450 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 496; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G47250.2p  transcript_id AT3G47250.2  protein_id AT3G47250.2p  transcript_id AT3G47250.2  
At3g47250	chr3:017400124	0.0	C/17400124-17401566	AT3G47250.3  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G47200.2); Has 496 Blast hits to 450 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 496; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G47250.3p  transcript_id AT3G47250.3  protein_id AT3G47250.3p  transcript_id AT3G47250.3  
At3g47260	chr3:017403129	0.0	W/17403129-17407827	AT3G47260.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G14130.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G04010.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G44500.1); similar to hypothetical protein 26.t00072 [Brassica oleracea] (GB:ABD65017.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At3g47270	chr3:017409792	0.0	W/17409792-17413813	AT3G47270.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT3G30450.1); similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT2G04970.1); similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT2G14140.1); similar to PREDICTED: hypothetical protein [Rattus norve (GB:XP_001063529.1); contains InterPro domain Protein of unknown function DUF1299; (InterPro:IPR010725); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623)  
At3g47280	chr3:017414407	0.0	C/17414407-17417056	AT3G47280.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 6.4e-82 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g47290	chr3:017420606	0.0	W/17420606-17420911,17421429-17421619,17421700-17421835,17421932-17422248,17422349-17422466,17422645-17422794,17422861-17422944,17423036-17423329	AT3G47290.1  CDS  go_process lipid metabolic process|GO:0006629||IEA  go_process signal transduction|GO:0007165||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_function phosphoinositide phospholipase C activity|GO:0004435||IEA  go_function phospholipase C activity|GO:0004629||IEA  go_function phosphoric diester hydrolase activity|GO:0008081||IEA  go_process signal transduction|GO:0007165||ISS  go_process intracellular signaling cascade|GO:0007242||ISS  go_function phospholipase C activity|GO:0004629||ISS  product phosphoinositide-specific phospholipase C family protein  note phosphoinositide-specific phospholipase C family protein; FUNCTIONS IN: phospholipase C activity, phosphoinositide phospholipase C activity, phosphoric diester hydrolase activity; INVOLVED IN: signal transduction, intracellular signaling cascade, lipid metabolic process; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific , X region (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phospholipase C, phosphoinositol-specific, C-terminal (PLC) (InterPro:IPR001192), C2 calcium-dependent membrane targeting (InterPro:IPR000008), Phospholipase C, phosphatidylinositol-specific, Y domain (InterPro:IPR001711); BEST Arabidopsis thaliana protein match is: phosphoinositide-specific phospholipase C family protein (TAIR:AT3G47220.1); Has 2199 Blast hits to 1617 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 1697; Fungi - 148; Plants - 187; Viruses - 0; Other Eukaryotes - 167 (source: NCBI BLink).  protein_id AT3G47290.1p  transcript_id AT3G47290.1  protein_id AT3G47290.1p  transcript_id AT3G47290.1  
At3g47295	chr3:017428054	0.0	W/17428054-17428141,17428244-17428371	AT3G47295.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G47295.1p  transcript_id AT3G47295.1  protein_id AT3G47295.1p  transcript_id AT3G47295.1  
At3g47300	chr3:017429412	0.0	C/17429412-17429555,17429276-17429340,17428875-17429193,17428685-17428786	AT3G47300.1  CDS  gene_syn SELT, SELT-LIKE PROTEIN PRECURSOR  gene SELT  go_process cell redox homeostasis|GO:0045454||IEA  go_function selenium binding|GO:0008430||IEA  product SELT (SELT-LIKE PROTEIN PRECURSOR); selenium binding  note SELT-LIKE PROTEIN PRECURSOR (SELT); FUNCTIONS IN: selenium binding; INVOLVED IN: cell redox homeostasis; CONTAINS InterPro DOMAIN/s: SelT/selW/selH selenoprotein (InterPro:IPR011893); BEST Arabidopsis thaliana protein match is: selenoprotein-related (TAIR:AT5G58640.1); Has 176 Blast hits to 176 proteins in 54 species: Archae - 0; Bacteria - 2; Metazoa - 119; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT3G47300.1p  transcript_id AT3G47300.1  protein_id AT3G47300.1p  transcript_id AT3G47300.1  
At3g47310	chr3:017430152	0.0	W/17430152-17432359	AT3G47310.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 1.3e-79 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g47320	chr3:017433459	0.0	W/17433459-17433966	AT3G47320.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G37385.1)  
At3g47330	chr3:017434493	0.0	C/17434493-17436912	AT3G47330.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09370.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23930.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G37390.1); similar to hypothetical protein 23.t00036 [Brassica oleracea] (GB:ABD65624.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048)  
At3g47340	chr3:017440964	0.0	C/17440964-17441043,17440403-17440541,17440219-17440314,17439804-17440136,17439564-17439725,17439125-17439427,17438787-17439044	AT3G47340.3  CDS  gene_syn ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, ASN1, AT-ASN1, DARK INDUCIBLE 6, DIN6, GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, GLUTAMINE-DEPENDENT ASPARAGINE SYNTHETASE  gene ASN1  function encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene s expression pattern is responding to the level of sugar in the cell.  go_process amino acid catabolic process|GO:0009063|11080291|TAS  go_process response to light stimulus|GO:0009416|7846154|IEP  go_process response to absence of light|GO:0009646|16805736|TAS  go_process response to salt stress|GO:0009651|11351099|IEP  go_process response to sucrose stimulus|GO:0009744|16463203|IEP  go_process response to sucrose stimulus|GO:0009744|7846154|IEP  go_process response to glucose stimulus|GO:0009749|16463203|IEP  go_process response to fructose stimulus|GO:0009750|16463203|IEP  go_process cellular response to sucrose starvation|GO:0043617|16354162|IEP  go_function asparagine synthase (glutamine-hydrolyzing) activity|GO:0004066|7846154|ISS  product ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1); asparagine synthase (glutamine-hydrolyzing)  note GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1 (ASN1); FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity; INVOLVED IN: in 8 processes; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamine amidotransferase, class-II (InterPro:IPR000583), Asparagine synthase (InterPro:IPR001962), Asparagine synthase, glutamine-hydrolyzing (InterPro:IPR006426), Glutamine amidotransferase, type II (InterPro:IPR017932); BEST Arabidopsis thaliana protein match is: ASN2 (ASPARAGINE SYNTHETASE 2); asparagine synthase (glutamine-hydrolyzing) (TAIR:AT5G65010.2); Has 6923 Blast hits to 6900 proteins in 1103 species: Archae - 190; Bacteria - 3091; Metazoa - 193; Fungi - 167; Plants - 229; Viruses - 5; Other Eukaryotes - 3048 (source: NCBI BLink).  protein_id AT3G47340.3p  transcript_id AT3G47340.3  protein_id AT3G47340.3p  transcript_id AT3G47340.3  
At3g47340	chr3:017440964	0.0	C/17440964-17441043,17440403-17440541,17440219-17440314,17439804-17440136,17439564-17439725,17439125-17439427,17438910-17439044,17438659-17438826,17438445-17438567	AT3G47340.2  CDS  gene_syn ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, ASN1, AT-ASN1, DARK INDUCIBLE 6, DIN6, GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, GLUTAMINE-DEPENDENT ASPARAGINE SYNTHETASE  gene ASN1  function encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene s expression pattern is responding to the level of sugar in the cell.  go_process amino acid catabolic process|GO:0009063|11080291|TAS  go_process response to light stimulus|GO:0009416|7846154|IEP  go_process response to absence of light|GO:0009646|16805736|TAS  go_process response to salt stress|GO:0009651|11351099|IEP  go_process response to sucrose stimulus|GO:0009744|16463203|IEP  go_process response to sucrose stimulus|GO:0009744|7846154|IEP  go_process response to glucose stimulus|GO:0009749|16463203|IEP  go_process response to fructose stimulus|GO:0009750|16463203|IEP  go_process cellular response to sucrose starvation|GO:0043617|16354162|IEP  go_function asparagine synthase (glutamine-hydrolyzing) activity|GO:0004066|7846154|ISS  product ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1); asparagine synthase (glutamine-hydrolyzing)  note GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1 (ASN1); FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity; INVOLVED IN: in 8 processes; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamine amidotransferase, class-II (InterPro:IPR000583), Asparagine synthase (InterPro:IPR001962), Asparagine synthase, glutamine-hydrolyzing (InterPro:IPR006426), Glutamine amidotransferase, type II (InterPro:IPR017932); BEST Arabidopsis thaliana protein match is: ASN2 (ASPARAGINE SYNTHETASE 2); asparagine synthase (glutamine-hydrolyzing) (TAIR:AT5G65010.2); Has 7219 Blast hits to 7027 proteins in 1103 species: Archae - 190; Bacteria - 3243; Metazoa - 198; Fungi - 171; Plants - 233; Viruses - 5; Other Eukaryotes - 3179 (source: NCBI BLink).  protein_id AT3G47340.2p  transcript_id AT3G47340.2  protein_id AT3G47340.2p  transcript_id AT3G47340.2  
At3g47340	chr3:017440964	0.0	C/17440964-17441043,17440403-17440541,17440219-17440314,17439804-17440136,17439564-17439725,17439125-17439427,17438910-17439044,17438659-17438826,17438460-17438567,17438136-17438366	AT3G47340.1  CDS  gene_syn ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, ASN1, AT-ASN1, DARK INDUCIBLE 6, DIN6, GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, GLUTAMINE-DEPENDENT ASPARAGINE SYNTHETASE  gene ASN1  function encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene s expression pattern is responding to the level of sugar in the cell.  go_process amino acid catabolic process|GO:0009063|11080291|TAS  go_process response to light stimulus|GO:0009416|7846154|IEP  go_process response to absence of light|GO:0009646|16805736|TAS  go_process response to salt stress|GO:0009651|11351099|IEP  go_process response to sucrose stimulus|GO:0009744|16463203|IEP  go_process response to sucrose stimulus|GO:0009744|7846154|IEP  go_process response to glucose stimulus|GO:0009749|16463203|IEP  go_process response to fructose stimulus|GO:0009750|16463203|IEP  go_process cellular response to sucrose starvation|GO:0043617|16354162|IEP  go_function asparagine synthase (glutamine-hydrolyzing) activity|GO:0004066|7846154|ISS  product ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1); asparagine synthase (glutamine-hydrolyzing)  note GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1 (ASN1); FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity; INVOLVED IN: in 8 processes; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase, class-II (InterPro:IPR000583), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Asparagine synthase (InterPro:IPR001962), Glutamine amidotransferase, type II (InterPro:IPR017932), Asparagine synthase, glutamine-hydrolyzing (InterPro:IPR006426); BEST Arabidopsis thaliana protein match is: ASN2 (ASPARAGINE SYNTHETASE 2); asparagine synthase (glutamine-hydrolyzing) (TAIR:AT5G65010.1); Has 7230 Blast hits to 7038 proteins in 1104 species: Archae - 190; Bacteria - 3243; Metazoa - 198; Fungi - 171; Plants - 235; Viruses - 5; Other Eukaryotes - 3188 (source: NCBI BLink).  protein_id AT3G47340.1p  transcript_id AT3G47340.1  protein_id AT3G47340.1p  transcript_id AT3G47340.1  
At3g47341	chr3:017441421	0.0	W/17441421-17441567	AT3G47341.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G47341.1p  transcript_id AT3G47341.1  protein_id AT3G47341.1p  transcript_id AT3G47341.1  
At3g47342	chr3:017445382	0.0	W/17445382-17445459	AT3G47342.1  snoRNA  gene_syn 67257.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT3G47342.1  
At3g47347	chr3:017445810	0.0	W/17445810-17445886	AT3G47347.1  snoRNA  gene_syn 67257.SNORNA00002  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT3G47347.1  
At3g47348	chr3:017445963	0.0	W/17445963-17446047	AT3G47348.1  snoRNA  gene_syn 67257.SNORNA00003  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT3G47348.1  
At3g47350	chr3:017446848	0.0	W/17446848-17447027,17447395-17447587,17447698-17447783,17448245-17448376,17448664-17448792,17448888-17448954,17449525-17449703	AT3G47350.2  CDS  gene_syn AtHSD2, hydroxysteroid dehydrogenase 2  gene AtHSD2  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note hydroxysteroid dehydrogenase 2 (AtHSD2); FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: AtHSD3 (hydroxysteroid dehydrogenase 3); binding / catalytic/ oxidoreductase (TAIR:AT3G47360.1).  protein_id AT3G47350.2p  transcript_id AT3G47350.2  protein_id AT3G47350.2p  transcript_id AT3G47350.2  
At3g47350	chr3:017446848	0.0	W/17446848-17447027,17447395-17447587,17447698-17447783,17448245-17448376,17448664-17448792,17448888-17449094	AT3G47350.1  CDS  gene_syn AtHSD2, hydroxysteroid dehydrogenase 2  gene AtHSD2  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note hydroxysteroid dehydrogenase 2 (AtHSD2); FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: AtHSD3 (hydroxysteroid dehydrogenase 3); binding / catalytic/ oxidoreductase (TAIR:AT3G47360.1); Has 77537 Blast hits to 77398 proteins in 2328 species: Archae - 466; Bacteria - 42972; Metazoa - 6578; Fungi - 4530; Plants - 1688; Viruses - 2; Other Eukaryotes - 21301 (source: NCBI BLink).  protein_id AT3G47350.1p  transcript_id AT3G47350.1  protein_id AT3G47350.1p  transcript_id AT3G47350.1  
At3g47360	chr3:017451112	0.0	W/17451112-17451294,17451640-17451832,17451959-17452044,17452196-17452327,17452416-17452544,17452637-17452843	AT3G47360.1  CDS  gene_syn AtHSD3, hydroxysteroid dehydrogenase 3  gene AtHSD3  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product AtHSD3 (hydroxysteroid dehydrogenase 3); binding / catalytic/ oxidoreductase  note hydroxysteroid dehydrogenase 3 (AtHSD3); FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT3G47350.1); Has 74899 Blast hits to 74759 proteins in 2247 species: Archae - 456; Bacteria - 41775; Metazoa - 6155; Fungi - 4255; Plants - 1665; Viruses - 2; Other Eukaryotes - 20591 (source: NCBI BLink).  protein_id AT3G47360.1p  transcript_id AT3G47360.1  protein_id AT3G47360.1p  transcript_id AT3G47360.1  
At3g47370	chr3:017454326	0.0	C/17454326-17454437,17453946-17454059,17453671-17453813	AT3G47370.1  CDS  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function RNA binding|GO:0003723||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component small ribosomal subunit|GO:0015935||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S20 (RPS20B)  note 40S ribosomal protein S20 (RPS20B); FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S10, conserved site (InterPro:IPR018268), Ribosomal protein S10, eukaryotic/archaeal (InterPro:IPR005729), Ribosomal protein S10 (InterPro:IPR001848); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S20 (RPS20C) (TAIR:AT5G62300.2); Has 5010 Blast hits to 5010 proteins in 1497 species: Archae - 173; Bacteria - 2606; Metazoa - 280; Fungi - 91; Plants - 120; Viruses - 0; Other Eukaryotes - 1740 (source: NCBI BLink).  protein_id AT3G47370.1p  transcript_id AT3G47370.1  protein_id AT3G47370.1p  transcript_id AT3G47370.1  
At3g47370	chr3:017454326	0.0	C/17454326-17454437,17453946-17454059,17453671-17453813	AT3G47370.2  CDS  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function RNA binding|GO:0003723||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component small ribosomal subunit|GO:0015935||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S20 (RPS20B)  note 40S ribosomal protein S20 (RPS20B); FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S10, conserved site (InterPro:IPR018268), Ribosomal protein S10, eukaryotic/archaeal (InterPro:IPR005729), Ribosomal protein S10 (InterPro:IPR001848); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S20 (RPS20C) (TAIR:AT5G62300.2); Has 5010 Blast hits to 5010 proteins in 1497 species: Archae - 173; Bacteria - 2606; Metazoa - 280; Fungi - 91; Plants - 120; Viruses - 0; Other Eukaryotes - 1740 (source: NCBI BLink).  protein_id AT3G47370.2p  transcript_id AT3G47370.2  protein_id AT3G47370.2p  transcript_id AT3G47370.2  
At3g47370	chr3:017454326	0.0	C/17454326-17454437,17453946-17454059,17453671-17453813	AT3G47370.3  CDS  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function RNA binding|GO:0003723||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component small ribosomal subunit|GO:0015935||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S20 (RPS20B)  note 40S ribosomal protein S20 (RPS20B); FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S10, conserved site (InterPro:IPR018268), Ribosomal protein S10, eukaryotic/archaeal (InterPro:IPR005729), Ribosomal protein S10 (InterPro:IPR001848); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S20 (RPS20C) (TAIR:AT5G62300.2); Has 5010 Blast hits to 5010 proteins in 1497 species: Archae - 173; Bacteria - 2606; Metazoa - 280; Fungi - 91; Plants - 120; Viruses - 0; Other Eukaryotes - 1740 (source: NCBI BLink).  protein_id AT3G47370.3p  transcript_id AT3G47370.3  protein_id AT3G47370.3p  transcript_id AT3G47370.3  
At3g47380	chr3:017457795	0.0	W/17457795-17458403	AT3G47380.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22) (TAIR:AT5G62350.1); Has 390 Blast hits to 387 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 390; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G47380.1p  transcript_id AT3G47380.1  protein_id AT3G47380.1p  transcript_id AT3G47380.1  
At3g47390	chr3:017462094	0.0	W/17462094-17462450,17462553-17462687,17462764-17462863,17462939-17463064,17463155-17463468,17463575-17463694,17463800-17463956,17464033-17464262,17464395-17464655	AT3G47390.1  CDS  go_process riboflavin biosynthetic process|GO:0009231||IEA  go_function catalytic activity|GO:0003824||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function 5-amino-6-(5-phosphoribosylamino)uracil reductase activity|GO:0008703||IEA  go_function diaminohydroxyphosphoribosylaminopyrimidine deaminase activity|GO:0008835||IEA  go_function hydrolase activity|GO:0016787||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_function zinc ion binding|GO:0008270||ISS  go_function hydrolase activity|GO:0016787||ISS  product cytidine/deoxycytidylate deaminase family protein  note cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: riboflavin biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP02464 (InterPro:IPR012816), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Riboflavin-specific deaminase, C-terminal (InterPro:IPR011549), Bacterial bifunctional deaminase-reductase, C-terminal (InterPro:IPR002734), Riboflavin biosynthesis protein RibD (InterPro:IPR004794); BEST Arabidopsis thaliana protein match is: cytidine/deoxycytidylate deaminase family protein (TAIR:AT4G20960.1); Has 5155 Blast hits to 5155 proteins in 1224 species: Archae - 129; Bacteria - 2674; Metazoa - 23; Fungi - 93; Plants - 54; Viruses - 14; Other Eukaryotes - 2168 (source: NCBI BLink).  protein_id AT3G47390.1p  transcript_id AT3G47390.1  protein_id AT3G47390.1p  transcript_id AT3G47390.1  
At3g47400	chr3:017465629	0.0	W/17465629-17466379,17466767-17467102,17467191-17467888	AT3G47400.1  CDS  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: hypocotyl, root, flower, carpel; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase inhibitor (InterPro:IPR006501), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT5G51490.1); Has 1858 Blast hits to 1664 proteins in 264 species: Archae - 2; Bacteria - 436; Metazoa - 15; Fungi - 176; Plants - 966; Viruses - 76; Other Eukaryotes - 187 (source: NCBI BLink).  protein_id AT3G47400.1p  transcript_id AT3G47400.1  protein_id AT3G47400.1p  transcript_id AT3G47400.1  
At3g47410	chr3:017468795	0.0	C/17468795-17469460	AT3G47410.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G47410.1p  transcript_id AT3G47410.1  protein_id AT3G47410.1p  transcript_id AT3G47410.1  
At3g47420	chr3:017473216	0.0	C/17473216-17474209,17472541-17473118	AT3G47420.1  CDS  go_process carbohydrate transport|GO:0008643||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  product glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative  note glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative; FUNCTIONS IN: sugar:hydrogen symporter activity; INVOLVED IN: carbohydrate transport; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: transporter, putative (TAIR:AT4G25220.1); Has 15274 Blast hits to 15146 proteins in 1243 species: Archae - 264; Bacteria - 11298; Metazoa - 817; Fungi - 1662; Plants - 129; Viruses - 0; Other Eukaryotes - 1104 (source: NCBI BLink).  protein_id AT3G47420.1p  transcript_id AT3G47420.1  protein_id AT3G47420.1p  transcript_id AT3G47420.1  
At3g47430	chr3:017480798	0.0	W/17480798-17480985,17481197-17481692	AT3G47430.1  CDS  gene_syn PEX11B  gene PEX11B  function member of the peroxin11 (PEX11) gene family, located on the peroxisome membrane, controls peroxisome proliferation.  go_component peroxisomal membrane|GO:0005778|17220199|IDA  go_component peroxisomal membrane|GO:0005778||ISS  go_process peroxisome organization|GO:0007031|17478547|IMP  go_process response to light stimulus|GO:0009416|17220199|IEP  go_process peroxisome fission|GO:0016559|17220199|IMP  go_process peroxisome fission|GO:0016559||ISS  go_function molecular_function|GO:0003674||ND  product PEX11B  note PEX11B; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: peroxisome fission, response to light stimulus, peroxisome organization; LOCATED IN: peroxisomal membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peroxisomal biogenesis factor 11 (InterPro:IPR008733); BEST Arabidopsis thaliana protein match is: PEX11A (PEROXIN 11A) (TAIR:AT1G47750.1); Has 217 Blast hits to 217 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 69; Fungi - 55; Plants - 73; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT3G47430.1p  transcript_id AT3G47430.1  protein_id AT3G47430.1p  transcript_id AT3G47430.1  
At3g47440	chr3:017482054	0.0	W/17482054-17482192,17482272-17482522,17482607-17482987	AT3G47440.1  CDS  gene_syn TIP5;1, tonoplast intrinsic protein 5;1  gene TIP5;1  function Encodes AtTIP5;1, functions as water and urea channels in pollen.  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_process urea transport|GO:0015840|19022253|IDA  go_function urea transmembrane transporter activity|GO:0015204|19022253|IDA  go_function water channel activity|GO:0015250|19022253|IDA  go_function water channel activity|GO:0015250||ISS  product TIP5;1 (tonoplast intrinsic protein 5;1); urea transmembrane transporter/ water channel  note tonoplast intrinsic protein 5;1 (TIP5;1); FUNCTIONS IN: water channel activity, urea transmembrane transporter activity; INVOLVED IN: urea transport, transport; LOCATED IN: membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: TIP2;2 (TONOPLAST INTRINSIC PROTEIN 2;2); water channel (TAIR:AT4G17340.1); Has 6229 Blast hits to 6220 proteins in 1185 species: Archae - 57; Bacteria - 2344; Metazoa - 1238; Fungi - 209; Plants - 1439; Viruses - 0; Other Eukaryotes - 942 (source: NCBI BLink).  protein_id AT3G47440.1p  transcript_id AT3G47440.1  protein_id AT3G47440.1p  transcript_id AT3G47440.1  
At3g47450	chr3:017485851	0.0	C/17485851-17486249,17485584-17485769,17485421-17485507,17485268-17485347,17485090-17485171,17484922-17484942,17484574-17484619,17484293-17484411,17484091-17484204,17483903-17484004,17483729-17483822,17483526-17483631,17483195-17483444	AT3G47450.1  CDS  gene_syn ATNOA1, ATNOS1, NO ASSOCIATED 1, NOA1, NOS1, RESISTANT TO INHIBITION WITH FOSMIDOMYCIN 1, RIF1  gene NOA1  function Encodes a protein with similarity to the bacterial YqeH GTPase required for proper ribosome assembly. In Arabidopsis, mutant analyses show that this protein regulates growth and hormonal signaling in plants. It also attenuates oxidative stress and reactive oxygen species (ROS). It also seems to be involved in regulating leaf senescence and cell death. This gene product is also involved in nitric oxide biosynthesis in response to ABA but not exogenous H2O2. This protein also appears to be required for proper plastid biogenesis. Levels of several plastid-localized proteins, including RBCL, ClpP1, and the MEP biosynthesis enzymes DXS and DXR are altered in rif1-1 mutants. This protein was originally characterized as a mitrochondrial-localized nitric oxide synthase, but, the synthase activity was later disproven. In addition, new studies with GFP fusion proteins and chloroplast import assays suggest that this protein is found in chloroplasts.  go_component chloroplast|GO:0009507|18431481|IDA  go_component mitochondrion|GO:0005739|16272429|IDA  go_component mitochondrion|GO:0005739|18469163|IDA  go_component chloroplast|GO:0009507|18469163|IDA  go_process nitric oxide biosynthetic process|GO:0006809|14526079|IDA  go_process response to oxidative stress|GO:0006979|16272429|IDA  go_process plastid organization|GO:0009657|18469163|IMP  go_process thylakoid membrane organization|GO:0010027|18469163|IMP  go_process response to ozone|GO:0010193|19054359|IMP  go_process regulation of isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway|GO:0010322|18469163|IMP  go_process leaf development|GO:0048366|18469163|IMP  go_process regulation of protein metabolic process|GO:0051246|18469163|IMP  go_function GTPase activity|GO:0003924|18801746|IDA  go_function nitric-oxide synthase activity|GO:0004517|18801746|IDA  product NOA1 (NO ASSOCIATED 1); GTPase/ nitric-oxide synthase  note NO ASSOCIATED 1 (NOA1); FUNCTIONS IN: nitric-oxide synthase activity, GTPase activity; INVOLVED IN: in 8 processes; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: GTP binding (TAIR:AT3G57180.1); Has 753 Blast hits to 708 proteins in 336 species: Archae - 6; Bacteria - 470; Metazoa - 135; Fungi - 23; Plants - 57; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT3G47450.1p  transcript_id AT3G47450.1  protein_id AT3G47450.1p  transcript_id AT3G47450.1  
At3g47450	chr3:017485851	0.0	C/17485851-17486249,17485584-17485769,17485421-17485507,17485268-17485347,17485090-17485171,17484922-17484942,17484574-17484619,17484293-17484411,17484091-17484204,17483903-17484004,17483733-17483822,17483526-17483635,17483195-17483444	AT3G47450.2  CDS  gene_syn ATNOA1, ATNOS1, NO ASSOCIATED 1, NOA1, NOS1, RESISTANT TO INHIBITION WITH FOSMIDOMYCIN 1, RIF1  gene NOA1  function Encodes a protein with similarity to the bacterial YqeH GTPase required for proper ribosome assembly. In Arabidopsis, mutant analyses show that this protein regulates growth and hormonal signaling in plants. It also attenuates oxidative stress and reactive oxygen species (ROS). It also seems to be involved in regulating leaf senescence and cell death. This gene product is also involved in nitric oxide biosynthesis in response to ABA but not exogenous H2O2. This protein also appears to be required for proper plastid biogenesis. Levels of several plastid-localized proteins, including RBCL, ClpP1, and the MEP biosynthesis enzymes DXS and DXR are altered in rif1-1 mutants. This protein was originally characterized as a mitrochondrial-localized nitric oxide synthase, but, the synthase activity was later disproven. In addition, new studies with GFP fusion proteins and chloroplast import assays suggest that this protein is found in chloroplasts.  go_component chloroplast|GO:0009507|18431481|IDA  go_component mitochondrion|GO:0005739|16272429|IDA  go_component mitochondrion|GO:0005739|18469163|IDA  go_component chloroplast|GO:0009507|18469163|IDA  go_process nitric oxide biosynthetic process|GO:0006809|14526079|IDA  go_process response to oxidative stress|GO:0006979|16272429|IDA  go_process plastid organization|GO:0009657|18469163|IMP  go_process thylakoid membrane organization|GO:0010027|18469163|IMP  go_process response to ozone|GO:0010193|19054359|IMP  go_process regulation of isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway|GO:0010322|18469163|IMP  go_process leaf development|GO:0048366|18469163|IMP  go_process regulation of protein metabolic process|GO:0051246|18469163|IMP  go_function GTPase activity|GO:0003924|18801746|IDA  go_function nitric-oxide synthase activity|GO:0004517|18801746|IDA  product NOA1 (NO ASSOCIATED 1); GTPase/ nitric-oxide synthase  note NO ASSOCIATED 1 (NOA1); FUNCTIONS IN: nitric-oxide synthase activity, GTPase activity; INVOLVED IN: in 8 processes; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: GTP binding (TAIR:AT3G57180.1); Has 763 Blast hits to 709 proteins in 337 species: Archae - 6; Bacteria - 470; Metazoa - 144; Fungi - 24; Plants - 57; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT3G47450.2p  transcript_id AT3G47450.2  protein_id AT3G47450.2p  transcript_id AT3G47450.2  
At3g47460	chr3:017486765	0.0	W/17486765-17487082,17487171-17487851,17487929-17488072,17488150-17488440,17488521-17488706,17488787-17488942,17489030-17489089,17489324-17489386,17489775-17489866,17489996-17490092,17490568-17490684,17490826-17491044,17491171-17491311,17491389-17491556,17491790-17491974,17492143-17492236,17492323-17492411,17492494-17492719,17492880-17492954,17493065-17493178	AT3G47460.1  CDS  gene_syn ATSMC2  gene ATSMC2  function member of SMC subfamily  go_component chromosome|GO:0005694||IEA  go_process chromosome organization|GO:0051276||IEA  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  product ATSMC2; transporter  note ATSMC2; FUNCTIONS IN: transporter activity; INVOLVED IN: chromosome organization; LOCATED IN: chromosome; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2); transporter (TAIR:AT5G62410.1); Has 82942 Blast hits to 43344 proteins in 1955 species: Archae - 943; Bacteria - 10288; Metazoa - 39173; Fungi - 5752; Plants - 2754; Viruses - 432; Other Eukaryotes - 23600 (source: NCBI BLink).  protein_id AT3G47460.1p  transcript_id AT3G47460.1  protein_id AT3G47460.1p  transcript_id AT3G47460.1  
At3g47470	chr3:017494565	0.0	C/17494565-17494773,17494189-17494337,17493843-17494109,17493622-17493752	AT3G47470.1  CDS  gene_syn CAB4, LHCA4, LHCI-730, LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4  gene LHCA4  function Encodes a chlorophyll a/b-binding protein that is more similar to the PSI Cab proteins than the PSII cab proteins. The predicted protein is about 20 amino acids shorter than most known Cab proteins.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process photosynthesis, light harvesting|GO:0009765||IEA  go_component plastoglobule|GO:0010287|16461379|IDA  go_component light-harvesting complex|GO:0030076||ISS  go_process photosynthesis|GO:0015979||ISS  go_function chlorophyll binding|GO:0016168||ISS  go_function chlorophyll binding|GO:0016168||NAS  product LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4); chlorophyll binding  note LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4 (LHCA4); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: LHCA2; chlorophyll binding (TAIR:AT3G61470.1); Has 1753 Blast hits to 1678 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1502; Viruses - 0; Other Eukaryotes - 249 (source: NCBI BLink).  protein_id AT3G47470.1p  transcript_id AT3G47470.1  protein_id AT3G47470.1p  transcript_id AT3G47470.1  
At3g47480	chr3:017496354	0.0	C/17496354-17496905	AT3G47480.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function calcium ion binding|GO:0005509||IEA  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT5G39670.1); Has 8600 Blast hits to 6017 proteins in 944 species: Archae - 0; Bacteria - 11; Metazoa - 3626; Fungi - 1866; Plants - 1874; Viruses - 0; Other Eukaryotes - 1223 (source: NCBI BLink).  protein_id AT3G47480.1p  transcript_id AT3G47480.1  protein_id AT3G47480.1p  transcript_id AT3G47480.1  
At3g47490	chr3:017498337	0.0	W/17498337-17498834,17500099-17500137,17500484-17500568,17500649-17500731	AT3G47490.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_function endonuclease activity|GO:0004519||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function endonuclease activity|GO:0004519||ISS  product HNH endonuclease domain-containing protein  note HNH endonuclease domain-containing protein; FUNCTIONS IN: nucleic acid binding, endonuclease activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HNH nuclease (InterPro:IPR003615), HNH endonuclease (InterPro:IPR002711); BEST Arabidopsis thaliana protein match is: HNH endonuclease domain-containing protein (TAIR:AT1G18680.1); Has 67 Blast hits to 67 proteins in 15 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT3G47490.1p  transcript_id AT3G47490.1  protein_id AT3G47490.1p  transcript_id AT3G47490.1  
At3g47490	chr3:017498337	0.0	W/17498337-17498867	AT3G47490.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function endonuclease activity|GO:0004519||ISS  product HNH endonuclease domain-containing protein  note HNH endonuclease domain-containing protein; FUNCTIONS IN: nucleic acid binding, endonuclease activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: HNH endonuclease domain-containing protein (TAIR:AT1G18680.1); Has 44 Blast hits to 44 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G47490.2p  transcript_id AT3G47490.2  protein_id AT3G47490.2p  transcript_id AT3G47490.2  
At3g47500	chr3:017505824	0.0	C/17505824-17505964,17504276-17505481	AT3G47500.1  CDS  gene_syn CDF3, CYCLING DOF FACTOR 3  gene CDF3  function Dof-type zinc finger domain-containing protein, identical to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Interacts with LKP2 and FKF1, but its overexpression does not change flowering time under short or long day conditions.  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|16002617|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  go_function protein binding|GO:0005515|16002617|IPI  product CDF3 (CYCLING DOF FACTOR 3); DNA binding / protein binding / transcription factor  note CYCLING DOF FACTOR 3 (CDF3); FUNCTIONS IN: protein binding, transcription factor activity, DNA binding; INVOLVED IN: regulation of timing of transition from vegetative to reproductive phase, regulation of transcription; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: CDF1 (CYCLING DOF FACTOR 1); DNA binding / protein binding / transcription factor (TAIR:AT5G62430.1); Has 694 Blast hits to 686 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 8; Plants - 618; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT3G47500.1p  transcript_id AT3G47500.1  protein_id AT3G47500.1p  transcript_id AT3G47500.1  
At3g47510	chr3:017511173	0.0	W/17511173-17511257,17511346-17511404,17511502-17511615	AT3G47510.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G47510.1p  transcript_id AT3G47510.1  protein_id AT3G47510.1p  transcript_id AT3G47510.1  
At3g47520	chr3:017513657	0.0	W/17513657-17514868	AT3G47520.1  CDS  gene_syn MALATE DEHYDROGENASE, MDH  gene MDH  function Encodes a protein with NAD-dependent malate dehydrogenase activity, located in chloroplasts.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function malate dehydrogenase activity|GO:0016615||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_function L-malate dehydrogenase activity|GO:0030060||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component chloroplast|GO:0009507|9774405|IDA  go_component stromule|GO:0010319|16923014|IDA  go_process response to cold|GO:0009409|16923014|IEP  go_function malate dehydrogenase activity|GO:0016615||ISS  product MDH (MALATE DEHYDROGENASE); L-malate dehydrogenase/ binding / catalytic/ malate dehydrogenase/ oxidoreductase/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor  note MALATE DEHYDROGENASE (MDH); FUNCTIONS IN: in 6 functions; INVOLVED IN: response to cold; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Malate dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria (InterPro:IPR010097), NAD(P)-binding (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Lactate/malate dehydrogenase (InterPro:IPR001236), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: PMDH2 (peroxisomal NAD-malate dehydrogenase 2); malate dehydrogenase (TAIR:AT5G09660.2); Has 10304 Blast hits to 10302 proteins in 2468 species: Archae - 175; Bacteria - 5792; Metazoa - 1107; Fungi - 251; Plants - 634; Viruses - 0; Other Eukaryotes - 2345 (source: NCBI BLink).  protein_id AT3G47520.1p  transcript_id AT3G47520.1  protein_id AT3G47520.1p  transcript_id AT3G47520.1  
At3g47530	chr3:017517382	0.0	C/17517382-17519157	AT3G47530.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21065.1); Has 11323 Blast hits to 4797 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 50; Fungi - 34; Plants - 11063; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).  protein_id AT3G47530.1p  transcript_id AT3G47530.1  protein_id AT3G47530.1p  transcript_id AT3G47530.1  
At3g47540	chr3:017521044	0.0	W/17521044-17521320,17521630-17521997	AT3G47540.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process cell wall macromolecule catabolic process|GO:0016998||IEA  go_function chitinase activity|GO:0004568||IEA  go_function chitinase activity|GO:0004568||ISS  product chitinase, putative  note chitinase, putative; FUNCTIONS IN: chitinase activity; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 19 (InterPro:IPR016283), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: chitinase, putative (TAIR:AT2G43590.1); Has 1014 Blast hits to 1010 proteins in 213 species: Archae - 0; Bacteria - 121; Metazoa - 9; Fungi - 2; Plants - 879; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G47540.1p  transcript_id AT3G47540.1  protein_id AT3G47540.1p  transcript_id AT3G47540.1  
At3g47543	chr3:017522656	0.0	C/17522656-17522829	AT3G47543.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G47543.1p  transcript_id AT3G47543.1  protein_id AT3G47543.1p  transcript_id AT3G47543.1  
At3g47550	chr3:017523841	0.0	W/17523841-17524116,17524195-17524266,17524369-17524433,17524579-17524732,17524811-17524894,17524965-17525054,17525153-17525278	AT3G47550.3  CDS  go_function zinc ion binding|GO:0008270||IEA  go_process response to salt stress|GO:0009651|11351099|IEP  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: response to salt stress; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G62460.1); Has 1346 Blast hits to 1345 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 706; Fungi - 79; Plants - 322; Viruses - 29; Other Eukaryotes - 210 (source: NCBI BLink).  protein_id AT3G47550.3p  transcript_id AT3G47550.3  protein_id AT3G47550.3p  transcript_id AT3G47550.3  
At3g47550	chr3:017523841	0.0	W/17523841-17524116,17524195-17524266,17524369-17524433,17524579-17524732,17524811-17524894,17524965-17525054,17525153-17525278	AT3G47550.6  CDS  go_function zinc ion binding|GO:0008270||IEA  go_process response to salt stress|GO:0009651|11351099|IEP  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: response to salt stress; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G62460.1); Has 1346 Blast hits to 1345 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 706; Fungi - 79; Plants - 322; Viruses - 29; Other Eukaryotes - 210 (source: NCBI BLink).  protein_id AT3G47550.6p  transcript_id AT3G47550.6  protein_id AT3G47550.6p  transcript_id AT3G47550.6  
At3g47550	chr3:017523841	0.0	W/17523841-17524116,17524195-17524266,17524369-17524433,17524579-17524732,17524811-17524894,17524965-17525054,17525160-17525168	AT3G47550.2  CDS  go_function zinc ion binding|GO:0008270||IEA  go_process response to salt stress|GO:0009651|11351099|IEP  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: response to salt stress; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G62460.1); Has 1346 Blast hits to 1345 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 706; Fungi - 79; Plants - 322; Viruses - 29; Other Eukaryotes - 210 (source: NCBI BLink).  protein_id AT3G47550.2p  transcript_id AT3G47550.2  protein_id AT3G47550.2p  transcript_id AT3G47550.2  
At3g47550	chr3:017523841	0.0	W/17523841-17524116,17524195-17524266,17524369-17524433,17524579-17524732,17524811-17524942	AT3G47550.1  CDS  go_function zinc ion binding|GO:0008270||IEA  go_process response to salt stress|GO:0009651|11351099|IEP  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: response to salt stress; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G62460.1); Has 1343 Blast hits to 1342 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 706; Fungi - 79; Plants - 319; Viruses - 29; Other Eukaryotes - 210 (source: NCBI BLink).  protein_id AT3G47550.1p  transcript_id AT3G47550.1  protein_id AT3G47550.1p  transcript_id AT3G47550.1  
At3g47560	chr3:017526843	0.0	C/17526843-17526977,17526287-17526572,17525859-17526189,17525575-17525779	AT3G47560.2  CDS  go_function catalytic activity|GO:0003824||ISS  product esterase/lipase/thioesterase family protein  note esterase/lipase/thioesterase family protein; FUNCTIONS IN: catalytic activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: esterase/lipase/thioesterase family protein (TAIR:AT1G29840.1); Has 502 Blast hits to 502 proteins in 144 species: Archae - 0; Bacteria - 257; Metazoa - 2; Fungi - 21; Plants - 99; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).  protein_id AT3G47560.2p  transcript_id AT3G47560.2  protein_id AT3G47560.2p  transcript_id AT3G47560.2  
At3g47560	chr3:017526843	0.0	C/17526843-17526977,17526490-17526572,17526287-17526408,17526031-17526189,17525859-17525952,17525575-17525779	AT3G47560.1  CDS  go_function catalytic activity|GO:0003824||ISS  product esterase/lipase/thioesterase family protein  note esterase/lipase/thioesterase family protein; FUNCTIONS IN: catalytic activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1749 (InterPro:IPR013744); BEST Arabidopsis thaliana protein match is: esterase/lipase/thioesterase family protein (TAIR:AT1G29840.1); Has 2014 Blast hits to 2013 proteins in 403 species: Archae - 28; Bacteria - 797; Metazoa - 9; Fungi - 47; Plants - 123; Viruses - 0; Other Eukaryotes - 1010 (source: NCBI BLink).  protein_id AT3G47560.1p  transcript_id AT3G47560.1  protein_id AT3G47560.1p  transcript_id AT3G47560.1  
At3g47570	chr3:017527611	0.0	W/17527611-17530281,17530387-17530748	AT3G47570.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT3G47580.1); Has 147269 Blast hits to 95682 proteins in 3462 species: Archae - 104; Bacteria - 13034; Metazoa - 59554; Fungi - 6918; Plants - 48316; Viruses - 310; Other Eukaryotes - 19033 (source: NCBI BLink).  protein_id AT3G47570.1p  transcript_id AT3G47570.1  protein_id AT3G47570.1p  transcript_id AT3G47570.1  
At3g47580	chr3:017532687	0.0	W/17532687-17535360,17535449-17535810	AT3G47580.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT3G47090.1); Has 141138 Blast hits to 91962 proteins in 3377 species: Archae - 90; Bacteria - 11267; Metazoa - 57018; Fungi - 6584; Plants - 47754; Viruses - 283; Other Eukaryotes - 18142 (source: NCBI BLink).  protein_id AT3G47580.1p  transcript_id AT3G47580.1  protein_id AT3G47580.1p  transcript_id AT3G47580.1  
At3g47590	chr3:017537234	0.0	C/17537234-17537515,17536944-17537026,17536569-17536849,17536393-17536486,17536133-17536322	AT3G47590.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product esterase/lipase/thioesterase family protein  note esterase/lipase/thioesterase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1749 (InterPro:IPR013744); BEST Arabidopsis thaliana protein match is: esterase/lipase/thioesterase family protein (TAIR:AT1G29840.1); Has 2709 Blast hits to 2708 proteins in 612 species: Archae - 40; Bacteria - 1392; Metazoa - 7; Fungi - 48; Plants - 140; Viruses - 7; Other Eukaryotes - 1075 (source: NCBI BLink).  protein_id AT3G47590.1p  transcript_id AT3G47590.1  protein_id AT3G47590.1p  transcript_id AT3G47590.1  
At3g47600	chr3:017540903	0.0	C/17540903-17541035,17540490-17540619,17539627-17540365	AT3G47600.1  CDS  gene_syn ATMYB94, ATMYBCP70, MYB DOMAIN PROTEIN 94, MYB94, myb domain protein 94  gene ATMYB94  function Encodes a putative transcription factor (MYB94).  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ATMYB94 (MYB DOMAIN PROTEIN 94); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 94 (ATMYB94); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 8 processes; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB96 (myb domain protein 96); DNA binding / transcription factor (TAIR:AT5G62470.2); Has 6320 Blast hits to 5870 proteins in 370 species: Archae - 0; Bacteria - 0; Metazoa - 666; Fungi - 312; Plants - 3730; Viruses - 4; Other Eukaryotes - 1608 (source: NCBI BLink).  protein_id AT3G47600.1p  transcript_id AT3G47600.1  protein_id AT3G47600.1p  transcript_id AT3G47600.1  
At3g47610	chr3:017549178	0.0	W/17549178-17549330,17549782-17550405,17550484-17550582,17550854-17551204	AT3G47610.1  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function transcription regulator activity|GO:0030528||IEA  product transcription regulator/ zinc ion binding  note transcription regulator/ zinc ion binding; FUNCTIONS IN: transcription regulator activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2HC5-type (InterPro:IPR009349); Has 247 Blast hits to 233 proteins in 128 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 80; Plants - 16; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT3G47610.1p  transcript_id AT3G47610.1  protein_id AT3G47610.1p  transcript_id AT3G47610.1  
At3g47620	chr3:017559004	0.0	W/17559004-17560473	AT3G47620.1  CDS  gene_syn AtTCP14, TEOSINTE BRANCHED1, CYCLOIDEA and PCF (TCP) 14  gene AtTCP14  function Encodes a transcription factor AtTCP14 that regulates seed germination. AtTCP14 shows elevated expression level just prior to germination. AtTCP14 is predominantly expressed in the vascular tissue of the embryo, and affects gene expression in radicles in a non-cell-autonomous manner.  go_component cellular_component|GO:0005575||ND  go_process response to abscisic acid stimulus|GO:0009737|17953649|IMP  go_process response to gibberellin stimulus|GO:0009739|17953649|IMP  go_process regulation of seed germination|GO:0010029|17953649|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AtTCP14 (TEOSINTE BRANCHED1, CYCLOIDEA and PCF (TCP) 14); transcription factor  note TEOSINTE BRANCHED1, CYCLOIDEA and PCF (TCP) 14 (AtTCP14); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of seed germination, response to gibberellin stimulus, response to abscisic acid stimulus, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor, putative (TAIR:AT1G69690.1); Has 897 Blast hits to 828 proteins in 126 species: Archae - 2; Bacteria - 61; Metazoa - 373; Fungi - 44; Plants - 293; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).  protein_id AT3G47620.1p  transcript_id AT3G47620.1  protein_id AT3G47620.1p  transcript_id AT3G47620.1  
At3g47630	chr3:017564903	0.0	C/17564903-17565031,17564743-17564805,17564580-17564648,17564322-17564414,17564142-17564246,17563982-17564059,17563725-17563853,17563532-17563637,17563254-17563444	AT3G47630.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial matrix Mmp37 (InterPro:IPR015222); Has 224 Blast hits to 224 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 92; Plants - 19; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT3G47630.1p  transcript_id AT3G47630.1  protein_id AT3G47630.1p  transcript_id AT3G47630.1  
At3g47630	chr3:017565055	0.0	C/17565055-17565162,17564903-17564959,17564743-17564805,17564580-17564648,17564322-17564414,17564142-17564246,17563982-17564059,17563725-17563853,17563532-17563637,17563254-17563444	AT3G47630.2  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial matrix Mmp37 (InterPro:IPR015222); Has 226 Blast hits to 226 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 96; Fungi - 92; Plants - 19; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT3G47630.2p  transcript_id AT3G47630.2  protein_id AT3G47630.2p  transcript_id AT3G47630.2  
At3g47640	chr3:017568035	0.0	W/17568035-17568093,17568184-17568287,17568396-17568523,17568670-17569101	AT3G47640.1  CDS  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT3G19860.2); Has 218 Blast hits to 218 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 0; Plants - 194; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT3G47640.1p  transcript_id AT3G47640.1  protein_id AT3G47640.1p  transcript_id AT3G47640.1  
At3g47650	chr3:017569576	0.0	W/17569576-17569743,17569839-17569905,17569988-17570084,17570184-17570262	AT3G47650.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  product bundle-sheath defective protein 2 family / bsd2 family  note bundle-sheath defective protein 2 family / bsd2 family; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, cysteine-rich region (InterPro:IPR001305); Has 47 Blast hits to 47 proteins in 18 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G47650.1p  transcript_id AT3G47650.1  protein_id AT3G47650.1p  transcript_id AT3G47650.1  
At3g47660	chr3:017571192	0.0	W/17571192-17571217,17571321-17571351,17571429-17571515,17571599-17571688,17571778-17571858,17572006-17572188,17572277-17574436,17574519-17574665,17574746-17574805	AT3G47660.1  CDS  go_function zinc ion binding|GO:0008270||IEA  go_function chromatin binding|GO:0003682||ISS  go_function Ran GTPase binding|GO:0008536||ISS  product Ran GTPase binding / chromatin binding / zinc ion binding  note Ran GTPase binding / chromatin binding / zinc ion binding; FUNCTIONS IN: chromatin binding, zinc ion binding, Ran GTPase binding; EXPRESSED IN: leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Zinc finger, FYVE-type (InterPro:IPR000306), Zinc finger, FYVE-related (InterPro:IPR017455), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Pleckstrin homology-type (InterPro:IPR011993), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Ran GTPase binding / chromatin binding / zinc ion binding (TAIR:AT5G19420.1); Has 14478 Blast hits to 5779 proteins in 291 species: Archae - 46; Bacteria - 1220; Metazoa - 6820; Fungi - 630; Plants - 1211; Viruses - 3; Other Eukaryotes - 4548 (source: NCBI BLink).  protein_id AT3G47660.1p  transcript_id AT3G47660.1  protein_id AT3G47660.1p  transcript_id AT3G47660.1  
At3g47670	chr3:017575019	0.0	C/17575019-17575849	AT3G47670.1  CDS  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor  note enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: ATPME1; pectinesterase (TAIR:AT1G53840.1); Has 480 Blast hits to 475 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 480; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G47670.1p  transcript_id AT3G47670.1  protein_id AT3G47670.1p  transcript_id AT3G47670.1  
At3g47675	chr3:017576463	0.0	C/17576463-17576537,17576278-17576397,17576101-17576196	AT3G47675.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G39690.1); Has 29 Blast hits to 29 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G47675.1p  transcript_id AT3G47675.1  protein_id AT3G47675.1p  transcript_id AT3G47675.1  
At3g47680	chr3:017577483	0.0	C/17577483-17578391	AT3G47680.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: ATGSTT3 (GLUTATHIONE S-TRANSFERASE THETA 3); glutathione transferase (TAIR:AT5G41220.1); Has 256 Blast hits to 256 proteins in 17 species: Archae - 0; Bacteria - 1; Metazoa - 18; Fungi - 0; Plants - 235; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G47680.1p  transcript_id AT3G47680.1  protein_id AT3G47680.1p  transcript_id AT3G47680.1  
At3g47690	chr3:017581353	0.0	W/17581353-17581460,17581834-17581902,17581990-17582076,17582178-17582284,17582368-17582510,17582603-17582649,17582755-17582868,17583191-17583346	AT3G47690.1  CDS  gene_syn ATEB1A  gene ATEB1A  function encodes a homolog of animal microtubule-end-binding protein. There are two other members of this family. EB1 forms foci at regions where the minus ends of microtubules are gathered during mitosis and early cytokinesis.  go_component microtubule organizing center|GO:0005815|14557818|IDA  go_component spindle microtubule|GO:0005876|18281505|IDA  go_component phragmoplast|GO:0009524|18281505|IDA  go_component preprophase band|GO:0009574|18281505|IDA  go_component cortical microtubule, transverse to long axis|GO:0010005|14557818|IDA  go_process cytoskeleton organization|GO:0007010|14557818|TAS  go_process thigmotropism|GO:0009652|18281505|IMP  go_function microtubule binding|GO:0008017|14557818|IDA  go_function microtubule binding|GO:0008017||ISS  product ATEB1A; microtubule binding  note ATEB1A; FUNCTIONS IN: microtubule binding; INVOLVED IN: thigmotropism, cytoskeleton organization; LOCATED IN: spindle microtubule, cortical microtubule, transverse to long axis, preprophase band, phragmoplast, microtubule organizing center; CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), EB1, C-terminal (InterPro:IPR004953); BEST Arabidopsis thaliana protein match is: ATEB1B (END BINDING PROTEIN 1B); microtubule binding (TAIR:AT5G62500.1); Has 751 Blast hits to 712 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 489; Fungi - 91; Plants - 57; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).  protein_id AT3G47690.1p  transcript_id AT3G47690.1  protein_id AT3G47690.1p  transcript_id AT3G47690.1  
At3g47700	chr3:017586284	0.0	C/17586284-17586578,17586035-17586136,17585748-17585848,17583773-17585662	AT3G47700.1  CDS  gene_syn MAG2, maigo2  gene MAG2  function Involved in transportation of seed storage proteins from the ER to the vacuole. Mutant seed cell accumulates the precursors of 12S globulin and 2S albumin instead of the vacuolar-located mature proteins.  go_component cytosol|GO:0005829|17194767|IDA  go_component extrinsic to endoplasmic reticulum membrane|GO:0042406|17194767|IDA  go_process protein targeting to vacuole|GO:0006623|17194767|IMP  go_process ER to Golgi vesicle-mediated transport|GO:0006888|17194767|IMP  go_function molecular_function|GO:0003674||ND  product MAG2 (maigo2)  note maigo2 (MAG2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ER to Golgi vesicle-mediated transport, protein targeting to vacuole; LOCATED IN: cytosol, extrinsic to endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RINT-1/TIP-1 (InterPro:IPR007528); BEST Arabidopsis thaliana protein match is: chromosome structural maintenance protein-related (TAIR:AT1G08400.1); Has 203 Blast hits to 203 proteins in 89 species: Archae - 6; Bacteria - 27; Metazoa - 93; Fungi - 45; Plants - 28; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G47700.1p  transcript_id AT3G47700.1  protein_id AT3G47700.1p  transcript_id AT3G47700.1  
At3g47710	chr3:017590729	0.0	W/17590729-17590857,17591306-17591455	AT3G47710.1  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product bHLH family protein  note bHLH family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092); BEST Arabidopsis thaliana protein match is: bHLH family protein (TAIR:AT1G74500.1); Has 72 Blast hits to 72 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G47710.1p  transcript_id AT3G47710.1  protein_id AT3G47710.1p  transcript_id AT3G47710.1  
At3g47720	chr3:017592771	0.0	W/17592771-17593249,17593343-17593590,17593663-17593772,17593853-17593966	AT3G47720.1  CDS  gene_syn SIMILAR TO RCD ONE 4, SRO4, T23J7_50  gene SRO4  function Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation.  go_component nucleus|GO:0005634||IEA  go_function NAD+ ADP-ribosyltransferase activity|GO:0003950||IEA  go_process biological_process|GO:0008150||ND  product SRO4 (SIMILAR TO RCD ONE 4); NAD+ ADP-ribosyltransferase  note SIMILAR TO RCD ONE 4 (SRO4); FUNCTIONS IN: NAD+ ADP-ribosyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Poly(ADP-ribose) polymerase, catalytic region (InterPro:IPR012317); BEST Arabidopsis thaliana protein match is: SRO5 (SIMILAR TO RCD ONE 5); NAD+ ADP-ribosyltransferase (TAIR:AT5G62520.1); Has 84 Blast hits to 81 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G47720.1p  transcript_id AT3G47720.1  protein_id AT3G47720.1p  transcript_id AT3G47720.1  
At3g47730	chr3:017598460	0.0	C/17598460-17598828,17598021-17598252,17597762-17597931,17597505-17597690,17597326-17597421,17597034-17597237,17596795-17596954,17596480-17596706,17596168-17596285,17595992-17596068,17595803-17595892,17595549-17595692,17595174-17595464,17595001-17595081,17594747-17594923,17594342-17594671	AT3G47730.1  CDS  gene_syn ATATH1  gene ATATH1  function member of ATH subfamily  go_component mitochondrion|GO:0005739||IEA  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ATATH1; ATPase, coupled to transmembrane movement of substances / transporter  note ATATH1; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: response to cyclopentenone; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATATH11; ATPase, coupled to transmembrane movement of substances / transporter (TAIR:AT5G61730.1); Has 223052 Blast hits to 206969 proteins in 2559 species: Archae - 4285; Bacteria - 153575; Metazoa - 6839; Fungi - 3031; Plants - 2265; Viruses - 6; Other Eukaryotes - 53051 (source: NCBI BLink).  protein_id AT3G47730.1p  transcript_id AT3G47730.1  protein_id AT3G47730.1p  transcript_id AT3G47730.1  
At3g47740	chr3:017600651	0.0	W/17600651-17600722,17600877-17601243,17601320-17601399,17601488-17601632,17601725-17601862,17601966-17602090,17602174-17602359,17602453-17602615,17602696-17602821,17602914-17602997,17603101-17603438,17603536-17603736,17603839-17603948,17604042-17604126,17604217-17604345,17604471-17604965	AT3G47740.1  CDS  gene_syn ATATH2  gene ATATH2  function member of ATH subfamily  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ATATH2; ATPase, coupled to transmembrane movement of substances / transporter  note ATATH2; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATATH6; ATPase, coupled to transmembrane movement of substances / transporter (TAIR:AT3G47780.1); Has 227833 Blast hits to 209957 proteins in 2563 species: Archae - 4341; Bacteria - 157356; Metazoa - 6743; Fungi - 3194; Plants - 2304; Viruses - 12; Other Eukaryotes - 53883 (source: NCBI BLink).  protein_id AT3G47740.1p  transcript_id AT3G47740.1  protein_id AT3G47740.1p  transcript_id AT3G47740.1  
At3g47750	chr3:017606427	0.0	W/17606427-17606498,17606603-17606923,17607024-17607146,17607237-17607381,17607664-17607783,17607862-17607992,17608074-17608232,17608342-17608504,17608553-17608708,17608805-17608888,17608978-17609324,17609398-17609598,17609821-17609930,17610007-17610091,17610164-17610292,17610395-17610889	AT3G47750.1  CDS  gene_syn ABCA4, ATATH3, ATP BINDING CASSETTE SUBFAMILY A4  gene ABCA4  function member of ATH subfamily  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ABCA4 (ATP BINDING CASSETTE SUBFAMILY A4); ATPase, coupled to transmembrane movement of substances / transporter  note ATP BINDING CASSETTE SUBFAMILY A4 (ABCA4); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATATH4; ATPase, coupled to transmembrane movement of substances / transporter (TAIR:AT3G47760.1); Has 228733 Blast hits to 210743 proteins in 2571 species: Archae - 4316; Bacteria - 157919; Metazoa - 6863; Fungi - 3464; Plants - 2463; Viruses - 9; Other Eukaryotes - 53699 (source: NCBI BLink).  protein_id AT3G47750.1p  transcript_id AT3G47750.1  protein_id AT3G47750.1p  transcript_id AT3G47750.1  
At3g47760	chr3:017611787	0.0	W/17611787-17611858,17612013-17612376,17612852-17612980,17613471-17613590,17613682-17613806,17613899-17614057,17614184-17614259,17614397-17614552,17614645-17614713,17614809-17615155,17615245-17615427,17615558-17615667,17615763-17615847,17615925-17616053,17616145-17616639	AT3G47760.1  CDS  gene_syn ATATH4  gene ATATH4  function member of ATH subfamily  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ATATH4; ATPase, coupled to transmembrane movement of substances / transporter  note ATATH4; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABCA4 (ATP BINDING CASSETTE SUBFAMILY A4); ATPase, coupled to transmembrane movement of substances / transporter (TAIR:AT3G47750.1); Has 229950 Blast hits to 211306 proteins in 2575 species: Archae - 4333; Bacteria - 158202; Metazoa - 7075; Fungi - 3372; Plants - 2399; Viruses - 12; Other Eukaryotes - 54557 (source: NCBI BLink).  protein_id AT3G47760.1p  transcript_id AT3G47760.1  protein_id AT3G47760.1p  transcript_id AT3G47760.1  
At3g47770	chr3:017618055	0.0	W/17618055-17618126,17618205-17618513,17618845-17618989,17619273-17619443,17619521-17619645,17619799-17619957,17620169-17620331,17620411-17620536,17620629-17620712,17620798-17621144,17621227-17621427,17621543-17621652,17621783-17621867,17621947-17622075,17622202-17622678	AT3G47770.1  CDS  gene_syn ATATH5  gene ATATH5  function member of ATH subfamily  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ATATH5; ATPase, coupled to transmembrane movement of substances / transporter  note ATATH5; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABCA4 (ATP BINDING CASSETTE SUBFAMILY A4); ATPase, coupled to transmembrane movement of substances / transporter (TAIR:AT3G47750.1); Has 224018 Blast hits to 207089 proteins in 2549 species: Archae - 4348; Bacteria - 155113; Metazoa - 6520; Fungi - 3020; Plants - 2281; Viruses - 9; Other Eukaryotes - 52727 (source: NCBI BLink).  protein_id AT3G47770.1p  transcript_id AT3G47770.1  protein_id AT3G47770.1p  transcript_id AT3G47770.1  
At3g47780	chr3:017624500	0.0	W/17624500-17624571,17624760-17625126,17625204-17625283,17625360-17625504,17625747-17625866,17625960-17626084,17626201-17626359,17626474-17626636,17626726-17626851,17626947-17627030,17627132-17627478,17627559-17627759,17627900-17628009,17628101-17628185,17628264-17628392,17628478-17628972	AT3G47780.1  CDS  gene_syn ATATH6  gene ATATH6  function member of ATH subfamily  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ATATH6; ATPase, coupled to transmembrane movement of substances / transporter  note ATATH6; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: response to cyclopentenone; LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATATH2; ATPase, coupled to transmembrane movement of substances / transporter (TAIR:AT3G47740.1); Has 232944 Blast hits to 214131 proteins in 2583 species: Archae - 4371; Bacteria - 159557; Metazoa - 7175; Fungi - 3476; Plants - 2430; Viruses - 16; Other Eukaryotes - 55919 (source: NCBI BLink).  protein_id AT3G47780.1p  transcript_id AT3G47780.1  protein_id AT3G47780.1p  transcript_id AT3G47780.1  
At3g47790	chr3:017629584	0.0	W/17629584-17629655,17629744-17630056,17630148-17630212,17630294-17630438,17630524-17630643,17630717-17630841,17630941-17631099,17631188-17631350,17631425-17631550,17631631-17631714,17631781-17632115,17632197-17632397,17632495-17632604,17632699-17632783,17632855-17632983,17633056-17633161,17633253-17633341,17633433-17633711	AT3G47790.1  CDS  gene_syn ATATH7  gene ATATH7  function member of ATH subfamily  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ATATH7; ATPase, coupled to transmembrane movement of substances / transporter  note ATATH7; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: N-terminal protein myristoylation; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATATH6; ATPase, coupled to transmembrane movement of substances / transporter (TAIR:AT3G47780.1); Has 232735 Blast hits to 212504 proteins in 2574 species: Archae - 4358; Bacteria - 159962; Metazoa - 7002; Fungi - 3326; Plants - 2525; Viruses - 14; Other Eukaryotes - 55548 (source: NCBI BLink).  protein_id AT3G47790.1p  transcript_id AT3G47790.1  protein_id AT3G47790.1p  transcript_id AT3G47790.1  
At3g47800	chr3:017634971	0.0	W/17634971-17635154,17635244-17635293,17635557-17635680,17635778-17635876,17636379-17636998	AT3G47800.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process hexose metabolic process|GO:0019318||IEA  go_process galactose metabolic process|GO:0006012||ISS  go_function aldose 1-epimerase activity|GO:0004034||ISS  product aldose 1-epimerase family protein  note aldose 1-epimerase family protein; FUNCTIONS IN: aldose 1-epimerase activity; INVOLVED IN: galactose metabolic process, hexose metabolic process, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Aldose 1-epimerase (InterPro:IPR008183), Aldose-1-epimerase (InterPro:IPR015443), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718); BEST Arabidopsis thaliana protein match is: aldose 1-epimerase family protein (TAIR:AT5G15140.1); Has 2620 Blast hits to 2617 proteins in 700 species: Archae - 4; Bacteria - 1373; Metazoa - 249; Fungi - 164; Plants - 126; Viruses - 0; Other Eukaryotes - 704 (source: NCBI BLink).  protein_id AT3G47800.1p  transcript_id AT3G47800.1  protein_id AT3G47800.1p  transcript_id AT3G47800.1  
At3g47810	chr3:017638886	0.0	C/17638886-17639017,17638095-17638232,17637256-17637558	AT3G47810.1  CDS  gene_syn ATVPS29, MAG1, MAIGO 1, VACUOLAR PROTEIN SORTING 29, VPS29  gene MAG1  function Homolog of yeast retromer subunit VPS29. Part of a retromer-like protein complex involved in endosome to lysosome protein transport.  go_function hydrolase activity|GO:0016787||IEA  go_component multivesicular body|GO:0005771|16582012|IDA  go_component microsome|GO:0005792|16582012|IDA  go_component membrane|GO:0016020|16582012|IDA  go_component retromer complex|GO:0030904|16582012|IDA  go_component retromer complex|GO:0030904|16582012|ISS  go_process protein targeting to vacuole|GO:0006623|19004783|IMP  go_process endosome to lysosome transport|GO:0008333|16582012|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product MAG1 (MAIGO 1); hydrolase/ protein serine/threonine phosphatase  note MAIGO 1 (MAG1); FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: endosome to lysosome transport, protein targeting to vacuole; LOCATED IN: retromer complex, microsome, membrane, multivesicular body; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Uncharacterised protein family UPF0025 (InterPro:IPR000979); Has 718 Blast hits to 700 proteins in 320 species: Archae - 60; Bacteria - 277; Metazoa - 167; Fungi - 99; Plants - 36; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT3G47810.1p  transcript_id AT3G47810.1  protein_id AT3G47810.1p  transcript_id AT3G47810.1  
At3g47810	chr3:017638886	0.0	C/17638886-17639017,17638095-17638232,17637256-17637558	AT3G47810.2  CDS  gene_syn ATVPS29, MAG1, MAIGO 1, VACUOLAR PROTEIN SORTING 29, VPS29  gene MAG1  function Homolog of yeast retromer subunit VPS29. Part of a retromer-like protein complex involved in endosome to lysosome protein transport.  go_function hydrolase activity|GO:0016787||IEA  go_component multivesicular body|GO:0005771|16582012|IDA  go_component microsome|GO:0005792|16582012|IDA  go_component membrane|GO:0016020|16582012|IDA  go_component retromer complex|GO:0030904|16582012|IDA  go_component retromer complex|GO:0030904|16582012|ISS  go_process protein targeting to vacuole|GO:0006623|19004783|IMP  go_process endosome to lysosome transport|GO:0008333|16582012|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product MAG1 (MAIGO 1); hydrolase/ protein serine/threonine phosphatase  note MAIGO 1 (MAG1); FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: endosome to lysosome transport, protein targeting to vacuole; LOCATED IN: retromer complex, microsome, membrane, multivesicular body; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Uncharacterised protein family UPF0025 (InterPro:IPR000979); Has 718 Blast hits to 700 proteins in 320 species: Archae - 60; Bacteria - 277; Metazoa - 167; Fungi - 99; Plants - 36; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT3G47810.2p  transcript_id AT3G47810.2  protein_id AT3G47810.2p  transcript_id AT3G47810.2  
At3g47810	chr3:017638886	0.0	C/17638886-17639017,17638095-17638232,17637256-17637558	AT3G47810.3  CDS  gene_syn ATVPS29, MAG1, MAIGO 1, VACUOLAR PROTEIN SORTING 29, VPS29  gene MAG1  function Homolog of yeast retromer subunit VPS29. Part of a retromer-like protein complex involved in endosome to lysosome protein transport.  go_function hydrolase activity|GO:0016787||IEA  go_component multivesicular body|GO:0005771|16582012|IDA  go_component microsome|GO:0005792|16582012|IDA  go_component membrane|GO:0016020|16582012|IDA  go_component retromer complex|GO:0030904|16582012|IDA  go_component retromer complex|GO:0030904|16582012|ISS  go_process protein targeting to vacuole|GO:0006623|19004783|IMP  go_process endosome to lysosome transport|GO:0008333|16582012|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product MAG1 (MAIGO 1); hydrolase/ protein serine/threonine phosphatase  note MAIGO 1 (MAG1); FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: endosome to lysosome transport, protein targeting to vacuole; LOCATED IN: retromer complex, microsome, membrane, multivesicular body; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Uncharacterised protein family UPF0025 (InterPro:IPR000979); Has 718 Blast hits to 700 proteins in 320 species: Archae - 60; Bacteria - 277; Metazoa - 167; Fungi - 99; Plants - 36; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT3G47810.3p  transcript_id AT3G47810.3  protein_id AT3G47810.3p  transcript_id AT3G47810.3  
At3g47820	chr3:017644434	0.0	W/17644434-17645963	AT3G47820.1  CDS  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  product armadillo/beta-catenin repeat family protein / U-box domain-containing protein  note armadillo/beta-catenin repeat family protein / U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: PUB38 (PLANT U-BOX 38); ubiquitin-protein ligase (TAIR:AT5G65200.1); Has 2270 Blast hits to 1530 proteins in 157 species: Archae - 0; Bacteria - 8; Metazoa - 420; Fungi - 323; Plants - 1292; Viruses - 0; Other Eukaryotes - 227 (source: NCBI BLink).  protein_id AT3G47820.1p  transcript_id AT3G47820.1  protein_id AT3G47820.1p  transcript_id AT3G47820.1  
At3g47830	chr3:017647069	0.0	W/17647069-17647458,17647665-17647865,17647964-17648020,17648113-17648346	AT3G47830.1  CDS  gene_syn T23J7.2  go_process DNA repair|GO:0006281||IEA  go_process base-excision repair|GO:0006284||IEA  go_function catalytic activity|GO:0003824||IEA  product HhH-GPD base excision DNA repair protein-related  note HhH-GPD base excision DNA repair protein-related; FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, base-excision repair; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: DML1 (DEMETER-LIKE 1); DNA N-glycosylase/ DNA-(apurinic or apyrimidinic site) lyase/ protein binding (TAIR:AT2G36490.1); Has 3071 Blast hits to 3071 proteins in 905 species: Archae - 142; Bacteria - 1551; Metazoa - 101; Fungi - 60; Plants - 102; Viruses - 0; Other Eukaryotes - 1115 (source: NCBI BLink).  protein_id AT3G47830.1p  transcript_id AT3G47830.1  protein_id AT3G47830.1p  transcript_id AT3G47830.1  
At3g47833	chr3:017648721	0.0	W/17648721-17648774,17648862-17648930,17649193-17649295,17649774-17649829	AT3G47833.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62575.1); Has 26 Blast hits to 26 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G47833.1p  transcript_id AT3G47833.1  protein_id AT3G47833.1p  transcript_id AT3G47833.1  
At3g47836	chr3:017651612	0.0	C/17651612-17651649,17650349-17650502	AT3G47836.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G47836.2p  transcript_id AT3G47836.2  protein_id AT3G47836.2p  transcript_id AT3G47836.2  
At3g47836	chr3:017651612	0.0	C/17651612-17651649,17650349-17650505	AT3G47836.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G47836.1p  transcript_id AT3G47836.1  protein_id AT3G47836.1p  transcript_id AT3G47836.1  
At3g47840	chr3:017651912	0.0	W/17651912-17654032	AT3G47840.1  CDS  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G53360.1); Has 15526 Blast hits to 4906 proteins in 141 species: Archae - 0; Bacteria - 5; Metazoa - 98; Fungi - 37; Plants - 15139; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).  protein_id AT3G47840.1p  transcript_id AT3G47840.1  protein_id AT3G47840.1p  transcript_id AT3G47840.1  
At3g47850	chr3:017655494	0.0	C/17655494-17656000,17654918-17655034,17654550-17654816,17654256-17654423	AT3G47850.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; Has 47 Blast hits to 47 proteins in 27 species: Archae - 0; Bacteria - 5; Metazoa - 12; Fungi - 6; Plants - 17; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT3G47850.1p  transcript_id AT3G47850.1  protein_id AT3G47850.1p  transcript_id AT3G47850.1  
At3g47860	chr3:017658187	0.0	C/17658187-17658269,17657836-17658001,17657510-17657755,17657140-17657430,17656778-17657053	AT3G47860.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||IEA  go_function binding|GO:0005488||IEA  product apolipoprotein D-related  note apolipoprotein D-related; FUNCTIONS IN: transporter activity, binding; INVOLVED IN: transport; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipocalin (InterPro:IPR002345), Lipocalin-like (InterPro:IPR013208), Calycin (InterPro:IPR012674), Calycin-like (InterPro:IPR011038); Has 153 Blast hits to 153 proteins in 59 species: Archae - 0; Bacteria - 10; Metazoa - 67; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT3G47860.1p  transcript_id AT3G47860.1  protein_id AT3G47860.1p  transcript_id AT3G47860.1  
At3g47870	chr3:017660021	0.0	C/17660021-17661007	AT3G47870.1  CDS  gene_syn LBD27, LOB DOMAIN-CONTAINING PROTEIN 27  gene LBD27  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product LBD27 (LOB DOMAIN-CONTAINING PROTEIN 27)  note LOB DOMAIN-CONTAINING PROTEIN 27 (LBD27); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD22 (LOB DOMAIN-CONTAINING PROTEIN 22) (TAIR:AT3G13850.1); Has 2048 Blast hits to 1579 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 93; Fungi - 26; Plants - 490; Viruses - 0; Other Eukaryotes - 1439 (source: NCBI BLink).  protein_id AT3G47870.1p  transcript_id AT3G47870.1  protein_id AT3G47870.1p  transcript_id AT3G47870.1  
At3g47875	chr3:017663475	0.0	C/17663475-17666891	AT3G47875.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 9.1e-40 P-value blast match to GB:BAA20419 reverse transcriptase (LINE-element) (Mus musculus)  
At3g47890	chr3:017671062	0.0	C/17671062-17673530,17670851-17670979,17670548-17670739,17670422-17670471,17670003-17670315,17669778-17669904,17669500-17669700,17669138-17669233,17668685-17668866,17668359-17668574,17668000-17668275,17667765-17667912,17667563-17667696,17667337-17667423,17667172-17667258	AT3G47890.1  CDS  go_component intracellular|GO:0005622||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_function zinc ion binding|GO:0008270||IEA  product ubiquitin thiolesterase/ zinc ion binding  note ubiquitin thiolesterase/ zinc ion binding; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: ubiquitin thiolesterase/ zinc ion binding (TAIR:AT3G47910.2); Has 2375 Blast hits to 1982 proteins in 179 species: Archae - 11; Bacteria - 61; Metazoa - 1259; Fungi - 109; Plants - 225; Viruses - 3; Other Eukaryotes - 707 (source: NCBI BLink).  protein_id AT3G47890.1p  transcript_id AT3G47890.1  protein_id AT3G47890.1p  transcript_id AT3G47890.1  
At3g47910	chr3:017678856	0.0	C/17678856-17681444,17678638-17678766,17678291-17678482,17678162-17678211,17677728-17678040,17677517-17677643,17677230-17677427,17676816-17676911,17676293-17676474,17675966-17676181,17675591-17675866,17675357-17675504,17675133-17675266,17674903-17674989,17674737-17674820	AT3G47910.1  CDS  go_component intracellular|GO:0005622||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_function zinc ion binding|GO:0008270||IEA  product ubiquitin thiolesterase/ zinc ion binding  note ubiquitin thiolesterase/ zinc ion binding; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: ubiquitin thiolesterase/ zinc ion binding (TAIR:AT3G47890.1); Has 3208 Blast hits to 2688 proteins in 238 species: Archae - 9; Bacteria - 136; Metazoa - 1545; Fungi - 250; Plants - 220; Viruses - 4; Other Eukaryotes - 1044 (source: NCBI BLink).  protein_id AT3G47910.1p  transcript_id AT3G47910.1  protein_id AT3G47910.1p  transcript_id AT3G47910.1  
At3g47910	chr3:017678856	0.0	C/17678856-17681444,17678638-17678766,17678291-17678482,17678162-17678211,17677728-17678040,17677517-17677643,17677230-17677430,17676816-17676911,17676293-17676474,17675966-17676181,17675591-17675866,17675357-17675504,17675133-17675266,17674903-17674989,17674737-17674820	AT3G47910.2  CDS  go_component intracellular|GO:0005622||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_function zinc ion binding|GO:0008270||IEA  product ubiquitin thiolesterase/ zinc ion binding  note ubiquitin thiolesterase/ zinc ion binding; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: ubiquitin thiolesterase/ zinc ion binding (TAIR:AT3G47890.1); Has 2920 Blast hits to 2518 proteins in 231 species: Archae - 9; Bacteria - 136; Metazoa - 1307; Fungi - 236; Plants - 222; Viruses - 6; Other Eukaryotes - 1004 (source: NCBI BLink).  protein_id AT3G47910.2p  transcript_id AT3G47910.2  protein_id AT3G47910.2p  transcript_id AT3G47910.2  
At3g47920	chr3:017682952	0.0	W/17682952-17683854	AT3G47920.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41590.1); Has 124 Blast hits to 122 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G47920.1p  transcript_id AT3G47920.1  protein_id AT3G47920.1p  transcript_id AT3G47920.1  
At3g47930	chr3:017684500	0.0	W/17684500-17685174,17685308-17685558,17685841-17686026,17686119-17686483,17686879-17686940	AT3G47930.2  CDS  gene_syn ATGLDH, L-GALACTONO-1,4-LACTONE DEHYDOROGENASE  gene ATGLDH  function L-Galactono-1,4-lactone dehydrogenase, catalyzes the final step of ascorbate biosynthesis  go_component mitochondrion|GO:0005739|12837548|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process L-ascorbic acid biosynthetic process|GO:0019853|9374475|TAS  go_function galactonolactone dehydrogenase activity|GO:0016633|18190525|IDA  go_function L-gulono-1,4-lactone dehydrogenase activity|GO:0080049|18190525|IDA  product ATGLDH (L-GALACTONO-1,4-LACTONE DEHYDOROGENASE); L-gulono-1,4-lactone dehydrogenase/ galactonolactone dehydrogenase  note L-GALACTONO-1,4-LACTONE DEHYDOROGENASE (ATGLDH); FUNCTIONS IN: galactonolactone dehydrogenase activity, L-gulono-1,4-lactone dehydrogenase activity; INVOLVED IN: L-ascorbic acid biosynthetic process; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-arabinono-1,4-lactone oxidase (InterPro:IPR007173), FAD-binding, type 2 (InterPro:IPR016166), Galactonolactone dehydrogenase (InterPro:IPR010029), Actin-binding FH2 (InterPro:IPR015425), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT5G11540.1); Has 3747 Blast hits to 3746 proteins in 849 species: Archae - 61; Bacteria - 2021; Metazoa - 239; Fungi - 279; Plants - 169; Viruses - 0; Other Eukaryotes - 978 (source: NCBI BLink).  protein_id AT3G47930.2p  transcript_id AT3G47930.2  protein_id AT3G47930.2p  transcript_id AT3G47930.2  
At3g47930	chr3:017684500	0.0	W/17684500-17685174,17685308-17685558,17685841-17686026,17686119-17686539,17686879-17687019,17687268-17687426	AT3G47930.1  CDS  gene_syn ATGLDH, L-GALACTONO-1,4-LACTONE DEHYDOROGENASE  gene ATGLDH  function L-Galactono-1,4-lactone dehydrogenase, catalyzes the final step of ascorbate biosynthesis  go_component mitochondrion|GO:0005739|12837548|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process L-ascorbic acid biosynthetic process|GO:0019853|9374475|TAS  go_function galactonolactone dehydrogenase activity|GO:0016633|18190525|IDA  go_function L-gulono-1,4-lactone dehydrogenase activity|GO:0080049|18190525|IDA  product ATGLDH (L-GALACTONO-1,4-LACTONE DEHYDOROGENASE); L-gulono-1,4-lactone dehydrogenase/ galactonolactone dehydrogenase  note L-GALACTONO-1,4-LACTONE DEHYDOROGENASE (ATGLDH); FUNCTIONS IN: galactonolactone dehydrogenase activity, L-gulono-1,4-lactone dehydrogenase activity; INVOLVED IN: L-ascorbic acid biosynthetic process; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-arabinono-1,4-lactone oxidase (InterPro:IPR007173), FAD-binding, type 2 (InterPro:IPR016166), Galactonolactone dehydrogenase (InterPro:IPR010029), Actin-binding FH2 (InterPro:IPR015425), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT5G11540.1); Has 3980 Blast hits to 3962 proteins in 867 species: Archae - 61; Bacteria - 2032; Metazoa - 365; Fungi - 297; Plants - 202; Viruses - 2; Other Eukaryotes - 1021 (source: NCBI BLink).  protein_id AT3G47930.1p  transcript_id AT3G47930.1  protein_id AT3G47930.1p  transcript_id AT3G47930.1  
At3g47940	chr3:017688795	0.0	C/17688795-17689402,17688232-17688676	AT3G47940.1  CDS  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock protein, putative  note DNAJ heat shock protein, putative; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT2G20560.1); Has 19462 Blast hits to 18661 proteins in 2040 species: Archae - 133; Bacteria - 6045; Metazoa - 3755; Fungi - 1709; Plants - 1428; Viruses - 15; Other Eukaryotes - 6377 (source: NCBI BLink).  protein_id AT3G47940.1p  transcript_id AT3G47940.1  protein_id AT3G47940.1p  transcript_id AT3G47940.1  
At3g47950	chr3:017693015	0.0	W/17693015-17693080,17693154-17693273,17693383-17693481,17693563-17693700,17693847-17693981,17694125-17694304,17694449-17694895,17694991-17695113,17695211-17695315,17695411-17695555,17695708-17695872,17695951-17696189,17696282-17696314,17696411-17696492,17696603-17696763,17696872-17697057,17697164-17697346,17697427-17697605,17697705-17697801	AT3G47950.1  CDS  gene_syn AHA4  gene AHA4  function mutant has Slight reduction in root and shoot growth; Exaggerated defects in salt stress; Plasma Membrane H+ ATPase  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_process response to salt stress|GO:0009651|11532165|IMP  go_function hydrogen-exporting ATPase activity, phosphorylative mechanism|GO:0008553|11532165|ISS  go_function ATPase activity|GO:0016887||ISS  product AHA4; ATPase/ hydrogen-exporting ATPase, phosphorylative mechanism  note AHA4; FUNCTIONS IN: ATPase activity, hydrogen-exporting ATPase activity, phosphorylative mechanism; INVOLVED IN: response to salt stress; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type, plasma-membrane proton-efflux (InterPro:IPR006534), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: AHA11 (Arabidopsis H(+)-ATPase 11); ATPase (TAIR:AT5G62670.1); Has 20879 Blast hits to 18609 proteins in 1827 species: Archae - 407; Bacteria - 11455; Metazoa - 3394; Fungi - 1580; Plants - 1116; Viruses - 3; Other Eukaryotes - 2924 (source: NCBI BLink).  protein_id AT3G47950.1p  transcript_id AT3G47950.1  protein_id AT3G47950.1p  transcript_id AT3G47950.1  
At3g47960	chr3:017700555	0.0	C/17700555-17700681,17699771-17699988,17699137-17699690,17698126-17699047	AT3G47960.1  CDS  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process oligopeptide transport|GO:0006857||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT5G62680.1); Has 2355 Blast hits to 2218 proteins in 361 species: Archae - 0; Bacteria - 385; Metazoa - 535; Fungi - 246; Plants - 1124; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT3G47960.1p  transcript_id AT3G47960.1  protein_id AT3G47960.1p  transcript_id AT3G47960.1  
At3g47965	chr3:017708679	0.0	C/17708679-17708709,17708096-17708199	AT3G47965.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G47965.1p  transcript_id AT3G47965.1  protein_id AT3G47965.1p  transcript_id AT3G47965.1  
At3g47980	chr3:017710477	0.0	W/17710477-17710804,17711502-17711635,17711760-17711907,17712396-17712502,17712590-17712631	AT3G47980.1  CDS  go_component chloroplast|GO:0009507||IEA  go_component integral to membrane|GO:0016021||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane HPP family protein  note integral membrane HPP family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: HPP (InterPro:IPR007065); BEST Arabidopsis thaliana protein match is: integral membrane HPP family protein (TAIR:AT5G62720.1); Has 1073 Blast hits to 1073 proteins in 283 species: Archae - 0; Bacteria - 504; Metazoa - 0; Fungi - 41; Plants - 30; Viruses - 0; Other Eukaryotes - 498 (source: NCBI BLink).  protein_id AT3G47980.1p  transcript_id AT3G47980.1  protein_id AT3G47980.1p  transcript_id AT3G47980.1  
At3g47990	chr3:017716023	0.0	C/17716023-17716051,17715852-17715890,17715488-17715554,17715330-17715403,17714827-17714965,17714652-17714744,17714514-17714579,17714241-17714360,17713832-17713945,17713367-17713702	AT3G47990.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / ubiquitin-protein ligase/ zinc ion binding (TAIR:AT1G12760.2); Has 6345 Blast hits to 6324 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 2274; Fungi - 448; Plants - 2629; Viruses - 17; Other Eukaryotes - 977 (source: NCBI BLink).  protein_id AT3G47990.1p  transcript_id AT3G47990.1  protein_id AT3G47990.1p  transcript_id AT3G47990.1  
At3g48000	chr3:017719768	0.0	C/17719768-17719843,17719415-17719552,17719174-17719316,17718929-17719082,17718607-17718836,17718426-17718515,17718178-17718351,17717948-17718085,17717711-17717848,17717559-17717620,17717082-17717355	AT3G48000.1  CDS  gene_syn ALDEHYDE DEHYDROGENASE 2, ALDEHYDE DEHYDROGENASE 2A, ALDEHYDE DEHYDROGENASE 2B4, ALDH2, ALDH2A, ALDH2B4  gene ALDH2B4  function Encodes a putative (NAD+) aldehyde dehydrogenase.  go_component mitochondrion|GO:0005739|17137349|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function 3-chloroallyl aldehyde dehydrogenase activity|GO:0004028||ISS  go_function aldehyde dehydrogenase (NAD) activity|GO:0004029|11999848|ISS  product ALDH2B4 (ALDEHYDE DEHYDROGENASE 2B4); 3-chloroallyl aldehyde dehydrogenase/ ATP binding / aldehyde dehydrogenase (NAD)  note ALDEHYDE DEHYDROGENASE 2B4 (ALDH2B4); FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, aldehyde dehydrogenase (NAD) activity, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: ALDH2B7; 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) (TAIR:AT1G23800.1); Has 43552 Blast hits to 43259 proteins in 1793 species: Archae - 242; Bacteria - 19685; Metazoa - 2302; Fungi - 1320; Plants - 606; Viruses - 0; Other Eukaryotes - 19397 (source: NCBI BLink).  protein_id AT3G48000.1p  transcript_id AT3G48000.1  protein_id AT3G48000.1p  transcript_id AT3G48000.1  
At3g48010	chr3:017723549	0.0	C/17723549-17724028,17723169-17723384,17722780-17723096,17722575-17722686,17722265-17722501,17721785-17722179,17721335-17721695	AT3G48010.1  CDS  gene_syn ATCNGC16, CNGC16, CYCLIC NUCLEOTIDE-GATED CHANNEL 16  gene ATCNGC16  function member of Cyclic nucleotide gated channel family  go_component membrane|GO:0016020||IEA  go_process ion transport|GO:0006811||IEA  go_function ion channel activity|GO:0005216||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function cyclic nucleotide binding|GO:0030551||ISS  product ATCNGC16; calmodulin binding / cyclic nucleotide binding / ion channel  note ATCNGC16; FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding, conserved site (InterPro:IPR018488), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: CNGC18 (CYCLIC NUCLEOTIDE-GATED CHANNEL 18); calmodulin binding / cyclic nucleotide binding / ion channel (TAIR:AT5G14870.1); Has 2570 Blast hits to 2386 proteins in 208 species: Archae - 0; Bacteria - 27; Metazoa - 1332; Fungi - 18; Plants - 661; Viruses - 0; Other Eukaryotes - 532 (source: NCBI BLink).  protein_id AT3G48010.1p  transcript_id AT3G48010.1  protein_id AT3G48010.1p  transcript_id AT3G48010.1  
At3g48020	chr3:017724593	0.0	W/17724593-17725000	AT3G48020.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible; BEST Arabidopsis thaliana protein match is: F-box family protein-related (TAIR:AT5G62860.1); Has 38 Blast hits to 38 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G48020.1p  transcript_id AT3G48020.1  protein_id AT3G48020.1p  transcript_id AT3G48020.1  
At3g48030	chr3:017727879	0.0	C/17727879-17727954,17726977-17727142,17725410-17726217	AT3G48030.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process response to hypoxia|GO:0001666||ISS  product hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein  note hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: response to hypoxia; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Hypoxia induced protein conserved region (InterPro:IPR007667); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G23980.1); Has 6706 Blast hits to 6689 proteins in 224 species: Archae - 0; Bacteria - 6; Metazoa - 2119; Fungi - 610; Plants - 2790; Viruses - 41; Other Eukaryotes - 1140 (source: NCBI BLink).  protein_id AT3G48030.1p  transcript_id AT3G48030.1  protein_id AT3G48030.1p  transcript_id AT3G48030.1  
At3g48040	chr3:017731561	0.0	W/17731561-17731665,17731991-17732078,17732277-17732386,17732480-17732543,17732639-17732703,17732805-17732870,17732972-17733075,17733217-17733241	AT3G48040.1  CDS  gene_syn ARAC8, ATRAC8, ATROP10, RHO-RELATED PROTEIN FROM PLANTS 10, ROP10  gene ROP10  function Encodes a member of the Rop subfamily of Rho GTPases in Arabidopsis that contains a putative farnesylation motif. It is localized to the plasma membrane and involved in the negative regulation of ABA signalling.  go_component plasma membrane|GO:0005886|12417701|IDA  go_component plasma membrane|GO:0005886|12417701|TAS  go_process abscisic acid mediated signaling|GO:0009738|12417701|TAS  go_process negative regulation of abscisic acid mediated signaling|GO:0009788|12417701|TAS  go_function GTPase activity|GO:0003924|12644670|ISS  go_function GTP binding|GO:0005525||ISS  product ROP10 (RHO-RELATED PROTEIN FROM PLANTS 10); GTP binding / GTPase  note RHO-RELATED PROTEIN FROM PLANTS 10 (ROP10); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: negative regulation of abscisic acid mediated signaling, abscisic acid mediated signaling; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Ras (InterPro:IPR013753), Ras small GTPase, Rho type (InterPro:IPR003578); BEST Arabidopsis thaliana protein match is: ARAC10; GTP binding (TAIR:AT5G62880.1); Has 19433 Blast hits to 19408 proteins in 557 species: Archae - 8; Bacteria - 37; Metazoa - 10864; Fungi - 2340; Plants - 1721; Viruses - 19; Other Eukaryotes - 4444 (source: NCBI BLink).  protein_id AT3G48040.1p  transcript_id AT3G48040.1  protein_id AT3G48040.1p  transcript_id AT3G48040.1  
At3g48050	chr3:017739275	0.0	C/17739275-17739412,17738690-17739061,17734270-17738601	AT3G48050.1  CDS  go_component nucleus|GO:0005634||IEA  go_process transcription|GO:0006350||IEA  go_function DNA binding|GO:0003677||IEA  go_function protein binding|GO:0005515||IEA  go_function transcription regulator activity|GO:0030528||IEA  go_function DNA binding|GO:0003677||ISS  product DNA binding / protein binding / transcription regulator  note DNA binding / protein binding / transcription regulator; FUNCTIONS IN: protein binding, transcription regulator activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), TFIIS N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal (InterPro:IPR014765), Bromo adjacent region (InterPro:IPR001025), Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal (InterPro:IPR010990); BEST Arabidopsis thaliana protein match is: bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT3G48060.1); Has 5017 Blast hits to 3180 proteins in 326 species: Archae - 12; Bacteria - 1044; Metazoa - 2041; Fungi - 498; Plants - 263; Viruses - 23; Other Eukaryotes - 1136 (source: NCBI BLink).  protein_id AT3G48050.1p  transcript_id AT3G48050.1  protein_id AT3G48050.1p  transcript_id AT3G48050.1  
At3g48050	chr3:017739275	0.0	C/17739275-17739412,17738690-17739061,17734270-17738601	AT3G48050.2  CDS  go_component nucleus|GO:0005634||IEA  go_process transcription|GO:0006350||IEA  go_function DNA binding|GO:0003677||IEA  go_function protein binding|GO:0005515||IEA  go_function transcription regulator activity|GO:0030528||IEA  go_function DNA binding|GO:0003677||ISS  product DNA binding / protein binding / transcription regulator  note DNA binding / protein binding / transcription regulator; FUNCTIONS IN: protein binding, transcription regulator activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: TFIIS N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), Transcription elongation factor, TFIIS/CRSP70, N-terminal (InterPro:IPR014765), Bromo adjacent region (InterPro:IPR001025), Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal (InterPro:IPR010990); BEST Arabidopsis thaliana protein match is: bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT3G48060.1); Has 5017 Blast hits to 3180 proteins in 326 species: Archae - 12; Bacteria - 1044; Metazoa - 2041; Fungi - 498; Plants - 263; Viruses - 23; Other Eukaryotes - 1136 (source: NCBI BLink).  protein_id AT3G48050.2p  transcript_id AT3G48050.2  protein_id AT3G48050.2p  transcript_id AT3G48050.2  
At3g48057	chr3:017742109	0.0	W/17742109-17742291	AT3G48057.1  miRNA  gene_syn MICRORNA843A, MIR843A  gene MIR843A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUUAGGUCGAGCUUCAUUGGA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR843A (MICRORNA843A); miRNA  transcript_id AT3G48057.1  
At3g48058	chr3:017742335	0.0	W/17742335-17742715	AT3G48058.1  pseudogenic_transcript  pseudo  function pseudogene of Rac-like GTP-binding protein  
At3g48060	chr3:017748235	0.0	C/17748235-17748372,17747648-17748019,17743234-17747559	AT3G48060.1  CDS  go_component nucleus|GO:0005634||IEA  go_process transcription|GO:0006350||IEA  go_function DNA binding|GO:0003677||IEA  go_function protein binding|GO:0005515||IEA  go_function transcription regulator activity|GO:0030528||IEA  go_function DNA binding|GO:0003677||ISS  product bromo-adjacent homology (BAH) domain-containing protein  note bromo-adjacent homology (BAH) domain-containing protein; FUNCTIONS IN: protein binding, transcription regulator activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: TFIIS N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), Bromo adjacent region (InterPro:IPR001025), Transcription elongation factor, TFIIS/CRSP70, N-terminal (InterPro:IPR014765), Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal (InterPro:IPR010990); BEST Arabidopsis thaliana protein match is: DNA binding / protein binding / transcription regulator (TAIR:AT3G48050.2); Has 5097 Blast hits to 2789 proteins in 313 species: Archae - 2; Bacteria - 730; Metazoa - 2273; Fungi - 517; Plants - 264; Viruses - 14; Other Eukaryotes - 1297 (source: NCBI BLink).  protein_id AT3G48060.1p  transcript_id AT3G48060.1  protein_id AT3G48060.1p  transcript_id AT3G48060.1  
At3g48070	chr3:017750878	0.0	W/17750878-17750952,17751025-17751091,17751161-17751971,17752198-17752297	AT3G48070.2  CDS  go_component chloroplast|GO:0009507||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT5G62910.1); Has 377 Blast hits to 373 proteins in 132 species: Archae - 0; Bacteria - 1; Metazoa - 148; Fungi - 94; Plants - 85; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT3G48070.2p  transcript_id AT3G48070.2  protein_id AT3G48070.2p  transcript_id AT3G48070.2  
At3g48070	chr3:017750878	0.0	W/17750878-17750952,17751025-17751091,17751161-17751978	AT3G48070.1  CDS  go_component chloroplast|GO:0009507||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT5G62910.1); Has 379 Blast hits to 375 proteins in 132 species: Archae - 0; Bacteria - 1; Metazoa - 148; Fungi - 96; Plants - 85; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT3G48070.1p  transcript_id AT3G48070.1  protein_id AT3G48070.1p  transcript_id AT3G48070.1  
At3g48080	chr3:017754828	0.0	C/17754828-17755145,17753995-17754747,17753104-17753922	AT3G48080.1  CDS  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_component cellular_component|GO:0005575||ND  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  go_function signal transducer activity|GO:0004871||ISS  go_function lipase activity|GO:0016298||ISS  product lipase class 3 family protein / disease resistance protein-related  note lipase class 3 family protein / disease resistance protein-related; FUNCTIONS IN: lipase activity, triacylglycerol lipase activity, signal transducer activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: EDS1 (enhanced disease susceptibility 1); lipase/ signal transducer/ triacylglycerol lipase (TAIR:AT3G48090.1); Has 422 Blast hits to 380 proteins in 34 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 392; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT3G48080.1p  transcript_id AT3G48080.1  protein_id AT3G48080.1p  transcript_id AT3G48080.1  
At3g48090	chr3:017756567	0.0	C/17756567-17757292,17756390-17756470,17755553-17756293	AT3G48090.2  CDS  gene_syn EDS1, EDS1 PROTEIN, enhanced disease susceptibility 1  gene EDS1  function Component of R gene-mediated disease resistance in Arabidopsis thaliana with homology to eukaryotic lipases.  go_process response to singlet oxygen|GO:0000304|16790029|IGI  go_process response to hypoxia|GO:0001666|18055613|IMP  go_process lipid metabolic process|GO:0006629||ISS  go_process defense response|GO:0006952||ISS  go_process plant-type hypersensitive response|GO:0009626|17997306|IMP  go_process systemic acquired resistance|GO:0009627|17419843|IEP  go_process systemic acquired resistance, salicylic acid mediated signaling pathway|GO:0009862|10077677|IGI  go_process regulation of hydrogen peroxide metabolic process|GO:0010310|18055613|IMP  go_process aerenchyma formation|GO:0010618|18055613|IMP  go_function triacylglycerol lipase activity|GO:0004806||ISS  go_function signal transducer activity|GO:0004871|10077677|TAS  go_function lipase activity|GO:0016298|10077677|ISS  product EDS1 (enhanced disease susceptibility 1); lipase/ signal transducer/ triacylglycerol lipase  note enhanced disease susceptibility 1 (EDS1); FUNCTIONS IN: lipase activity, triacylglycerol lipase activity, signal transducer activity; INVOLVED IN: in 9 processes; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: lipase class 3 family protein / disease resistance protein-related (TAIR:AT3G48080.1); Has 426 Blast hits to 384 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 392; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT3G48090.2p  transcript_id AT3G48090.2  protein_id AT3G48090.2p  transcript_id AT3G48090.2  
At3g48090	chr3:017757375	0.0	C/17757375-17757692,17756567-17757298,17756390-17756470,17755553-17756293	AT3G48090.1  CDS  gene_syn EDS1, EDS1 PROTEIN, enhanced disease susceptibility 1  gene EDS1  function Component of R gene-mediated disease resistance in Arabidopsis thaliana with homology to eukaryotic lipases.  go_process response to singlet oxygen|GO:0000304|16790029|IGI  go_process response to hypoxia|GO:0001666|18055613|IMP  go_process lipid metabolic process|GO:0006629||ISS  go_process defense response|GO:0006952||ISS  go_process plant-type hypersensitive response|GO:0009626|17997306|IMP  go_process systemic acquired resistance|GO:0009627|17419843|IEP  go_process systemic acquired resistance, salicylic acid mediated signaling pathway|GO:0009862|10077677|IGI  go_process regulation of hydrogen peroxide metabolic process|GO:0010310|18055613|IMP  go_process aerenchyma formation|GO:0010618|18055613|IMP  go_function triacylglycerol lipase activity|GO:0004806||ISS  go_function signal transducer activity|GO:0004871|10077677|TAS  go_function lipase activity|GO:0016298|10077677|ISS  product EDS1 (enhanced disease susceptibility 1); lipase/ signal transducer/ triacylglycerol lipase  note enhanced disease susceptibility 1 (EDS1); FUNCTIONS IN: lipase activity, triacylglycerol lipase activity, signal transducer activity; INVOLVED IN: in 9 processes; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: lipase class 3 family protein / disease resistance protein-related (TAIR:AT3G48080.1); Has 429 Blast hits to 387 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 394; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT3G48090.1p  transcript_id AT3G48090.1  protein_id AT3G48090.1p  transcript_id AT3G48090.1  
At3g48100	chr3:017760590	0.0	C/17760590-17760740,17760407-17760486,17760235-17760312,17760037-17760107,17759112-17759286	AT3G48100.1  CDS  gene_syn ARABIDOPSIS RESPONSE REGULATOR 5, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, ARR5, ATRR2, IBC6, INDUCED BY CYTOKININ 6  gene ARR5  function Encodes a transcription repressor that mediates a negative feedback loop in cytokinin signalling. ARR5 expression is upregulated by Class I KNOX genes. Arr5 protein is stabilized by cytokinin in a two-component phosphorelay.  go_component nucleus|GO:0005634|18642946|IDA  go_component cytoplasm|GO:0005737|18642946|IDA  go_process circadian rhythm|GO:0007623|16326927|IMP  go_process response to cytokinin stimulus|GO:0009735|11115887|IEP  go_process response to cytokinin stimulus|GO:0009735|16407152|IEP  go_process response to cytokinin stimulus|GO:0009735|9634588|IEP  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_process cytokinin mediated signaling|GO:0009736|18065689|IMP  go_process response to red light|GO:0010114|14973166|IMP  go_function two-component response regulator activity|GO:0000156|11574878|ISS  go_function two-component response regulator activity|GO:0000156|12068096|ISS  go_function two-component response regulator activity|GO:0000156|18065689|IMP  go_function two-component response regulator activity|GO:0000156|9607306|ISS  go_function two-component response regulator activity|GO:0000156||ISS  go_function transcription regulator activity|GO:0030528|12068096|TAS  product ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5); transcription regulator/ two-component response regulator  note ARABIDOPSIS RESPONSE REGULATOR 5 (ARR5); FUNCTIONS IN: transcription regulator activity, two-component response regulator activity; INVOLVED IN: response to red light, cytokinin mediated signaling, circadian rhythm, response to cytokinin stimulus; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver region (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: ARR6 (RESPONSE REGULATOR 6); transcription regulator/ two-component response regulator (TAIR:AT5G62920.1); Has 28410 Blast hits to 28092 proteins in 1515 species: Archae - 166; Bacteria - 24015; Metazoa - 12; Fungi - 346; Plants - 680; Viruses - 2; Other Eukaryotes - 3189 (source: NCBI BLink).  protein_id AT3G48100.1p  transcript_id AT3G48100.1  protein_id AT3G48100.1p  transcript_id AT3G48100.1  
At3g48110	chr3:017763111	0.0	W/17763111-17763353,17763445-17763709,17763948-17764003,17764121-17764198,17764354-17764428,17764523-17764593,17764685-17764801,17764898-17764999,17765152-17765278,17765537-17765620,17765814-17765900,17766218-17766319,17766539-17766602,17766758-17766813,17767102-17767173,17767276-17767358,17767472-17767520,17767609-17767671,17767813-17767902,17768004-17768090,17768229-17768300,17768412-17768470,17768641-17768734,17768948-17769166,17769324-17769418,17769606-17769696,17769798-17769902,17769988-17770026,17770127-17770216,17770367-17770468,17770543-17770624,17770704-17770789,17770866-17770964	AT3G48110.1  CDS  gene_syn EDD, EDD1, EMBRYO-DEFECTIVE-DEVELOPMENT 1, GLYCYL-TRNA SYNTHETASE  gene EDD1  function glycine-tRNA ligase  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component mitochondrion|GO:0005739|16251277|IDA  go_component chloroplast|GO:0009507|16251277|IDA  go_component chloroplast|GO:0009507|9707529|IDA  go_process glycyl-tRNA aminoacylation|GO:0006426|9707529|ISS  go_process embryonic development ending in seed dormancy|GO:0009793|16297076|IMP  go_process regulation of embryonic development|GO:0045995|9707529|IMP  go_function glycine-tRNA ligase activity|GO:0004820|9707529|ISS  product EDD1 (EMBRYO-DEFECTIVE-DEVELOPMENT 1); glycine-tRNA ligase  note EMBRYO-DEFECTIVE-DEVELOPMENT 1 (EDD1); FUNCTIONS IN: glycine-tRNA ligase activity; INVOLVED IN: embryonic development ending in seed dormancy, regulation of embryonic development, glycyl-tRNA aminoacylation; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycyl-tRNA synthetase, class IIc, beta subunit, N-terminal (InterPro:IPR002311), Glycyl-tRNA synthetase, class II, heterodimeric (InterPro:IPR006194), Glycyl-tRNA synthetase, class IIc, beta subunit (InterPro:IPR015944), Glycyl-tRNA synthetase, class IIc, alpha subunit (InterPro:IPR002310); Has 8275 Blast hits to 8266 proteins in 1009 species: Archae - 4; Bacteria - 3853; Metazoa - 1; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 4395 (source: NCBI BLink).  protein_id AT3G48110.1p  transcript_id AT3G48110.1  protein_id AT3G48110.1p  transcript_id AT3G48110.1  
At3g48115	chr3:017771170	0.0	C/17771170-17772038	AT3G48115.2  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G48115.2  
At3g48115	chr3:017771184	0.0	C/17771184-17772926	AT3G48115.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G48115.1  
At3g48120	chr3:017772137	0.0	W/17772137-17772700,17773076-17773127,17773843-17773929,17774050-17774114,17774218-17774385,17774500-17774550	AT3G48120.1  CDS  gene_syn T24C20.2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, root, stamen; EXPRESSED DURING: 4 anthesis; Has 21691 Blast hits to 11696 proteins in 534 species: Archae - 8; Bacteria - 584; Metazoa - 13416; Fungi - 2268; Plants - 1103; Viruses - 109; Other Eukaryotes - 4203 (source: NCBI BLink).  protein_id AT3G48120.1p  transcript_id AT3G48120.1  protein_id AT3G48120.1p  transcript_id AT3G48120.1  
At3g48130	chr3:017774952	0.0	C/17774952-17775128	AT3G48130.1  pseudogenic_transcript  pseudo  gene_syn RSU1  gene RSU1  function ribosomal protein L13 homolog  note 60S ribosomal protein L13 (RPL13A), pseudogene, ribosomal protein L13 - Arabidopsis thaliana,PIR2:S37271; blastp match of 72% identity and 1.9e-15 P-value to SP|P41129|R132_BRANA 60S ribosomal protein L13-2 (Cold induced protein C24B). (Rape) {Brassica napus}  
At3g48131	chr3:017775456	0.0	C/17775456-17775587	AT3G48131.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G48131.1p  transcript_id AT3G48131.1  protein_id AT3G48131.1p  transcript_id AT3G48131.1  
At3g48140	chr3:017778471	0.0	W/17778471-17778497,17778655-17778743,17779149-17779299	AT3G48140.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process leaf senescence|GO:0010150||ISS  go_function molecular_function|GO:0003674||ND  product senescence-associated protein, putative  note senescence-associated protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: leaf senescence; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: B12D (InterPro:IPR010530); BEST Arabidopsis thaliana protein match is: germination protein-related (TAIR:AT3G29970.1); Has 78 Blast hits to 78 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G48140.1p  transcript_id AT3G48140.1  protein_id AT3G48140.1p  transcript_id AT3G48140.1  
At3g48150	chr3:017782480	0.0	C/17782480-17782565,17781704-17782016,17780006-17781256,17779800-17779889	AT3G48150.1  CDS  gene_syn ANAPHASE-PROMOTING COMPLEX SUBUNIT 8, APC8, CDC23  gene APC8  function anaphase-promoting complex or cyclosome subunit  go_component anaphase-promoting complex|GO:0005680||IEA  go_process regulation of mitotic metaphase/anaphase transition|GO:0030071||IEA  go_function binding|GO:0005488||IEA  go_process cell cycle|GO:0007049||ISS  product APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8); binding  note ANAPHASE-PROMOTING COMPLEX SUBUNIT 8 (APC8); FUNCTIONS IN: binding; INVOLVED IN: cell cycle, regulation of mitotic metaphase/anaphase transition; LOCATED IN: anaphase-promoting complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Cdc23 (InterPro:IPR007192), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: HBT (HOBBIT); binding (TAIR:AT2G20000.1); Has 11307 Blast hits to 6705 proteins in 703 species: Archae - 676; Bacteria - 4016; Metazoa - 1822; Fungi - 564; Plants - 316; Viruses - 0; Other Eukaryotes - 3913 (source: NCBI BLink).  protein_id AT3G48150.1p  transcript_id AT3G48150.1  protein_id AT3G48150.1p  transcript_id AT3G48150.1  
At3g48160	chr3:017783641	0.0	W/17783641-17783774,17783852-17783919,17784009-17784061,17784146-17784223,17784334-17784387,17784479-17784590,17784753-17784820,17784912-17784987,17785095-17785156,17785254-17785659,17785746-17785846	AT3G48160.2  CDS  gene_syn DEL1, DP-E2F-LIKE 1, DP-E2F-LIKE PROTEIN 1, E2F-LIKE 3, E2FE, E2L3  gene DEL1  function E2F-like protein, an inhibitor of the endocycle, preserves the mitotic state of proliferating cells by suppressing transcription of genes that are required for cells to enter the DNA endoreduplication cycle.  go_component nucleus|GO:0005634|11867638|IDA  go_process negative regulation of DNA endoreduplication|GO:0032876|18787127|IGI  go_process DNA endoreduplication|GO:0042023|15649366|IMP  go_function DNA binding|GO:0003677|11867638|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  product DEL1 (DP-E2F-LIKE 1); DNA binding / transcription factor  note DP-E2F-LIKE 1 (DEL1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: negative regulation of DNA endoreduplication, DNA endoreduplication; LOCATED IN: nucleus; EXPRESSED IN: shoot apex, vascular tissue, flower, cortex, adult leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Transcription factor E2F/dimerisation partner (TDP) (InterPro:IPR003316), E2F Family (InterPro:IPR015633); BEST Arabidopsis thaliana protein match is: DEL3 (DP-E2F-LIKE PROTEIN 3); DNA binding / transcription factor (TAIR:AT3G01330.1); Has 935 Blast hits to 692 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 631; Fungi - 6; Plants - 179; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT3G48160.2p  transcript_id AT3G48160.2  protein_id AT3G48160.2p  transcript_id AT3G48160.2  
At3g48160	chr3:017783641	0.0	W/17783641-17783774,17783852-17783919,17784009-17784061,17784146-17784223,17784334-17784387,17784479-17784590,17784753-17784820,17784912-17784987,17785095-17785156,17785254-17785688	AT3G48160.1  CDS  gene_syn DEL1, DP-E2F-LIKE 1, DP-E2F-LIKE PROTEIN 1, E2F-LIKE 3, E2FE, E2L3  gene DEL1  function E2F-like protein, an inhibitor of the endocycle, preserves the mitotic state of proliferating cells by suppressing transcription of genes that are required for cells to enter the DNA endoreduplication cycle.  go_component nucleus|GO:0005634|11867638|IDA  go_process negative regulation of DNA endoreduplication|GO:0032876|18787127|IGI  go_process DNA endoreduplication|GO:0042023|15649366|IMP  go_function DNA binding|GO:0003677|11867638|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  product DEL1 (DP-E2F-LIKE 1); DNA binding / transcription factor  note DP-E2F-LIKE 1 (DEL1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: negative regulation of DNA endoreduplication, DNA endoreduplication; LOCATED IN: nucleus; EXPRESSED IN: shoot apex, vascular tissue, flower, cortex, adult leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Transcription factor E2F/dimerisation partner (TDP) (InterPro:IPR003316), E2F Family (InterPro:IPR015633); BEST Arabidopsis thaliana protein match is: DEL3 (DP-E2F-LIKE PROTEIN 3); DNA binding / transcription factor (TAIR:AT3G01330.1); Has 935 Blast hits to 692 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 631; Fungi - 6; Plants - 179; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT3G48160.1p  transcript_id AT3G48160.1  protein_id AT3G48160.1p  transcript_id AT3G48160.1  
At3g48170	chr3:017789810	0.0	C/17789810-17789918,17789312-17789454,17789138-17789218,17788910-17789058,17788633-17788725,17788422-17788545,17788243-17788308,17788058-17788124,17787889-17787965,17787332-17787445,17787123-17787200,17786884-17787035,17786736-17786796,17786530-17786636,17786290-17786380	AT3G48170.1  CDS  gene_syn ALDH10A9  gene ALDH10A9  function Arabidopsis thaliana putative betaine aldehyde dehydrogenase  go_component peroxisome|GO:0005777|17951448|IDA  go_process metabolic process|GO:0008152||IEA  go_process glycine betaine biosynthetic process from choline|GO:0019285||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function 3-chloroallyl aldehyde dehydrogenase activity|GO:0004028||ISS  product ALDH10A9; 3-chloroallyl aldehyde dehydrogenase/ oxidoreductase  note ALDH10A9; FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, oxidoreductase activity; INVOLVED IN: glycine betaine biosynthetic process from choline, metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: ALDH10A8; 3-chloroallyl aldehyde dehydrogenase/ oxidoreductase (TAIR:AT1G74920.1); Has 43975 Blast hits to 43722 proteins in 1828 species: Archae - 247; Bacteria - 20401; Metazoa - 2275; Fungi - 1320; Plants - 601; Viruses - 0; Other Eukaryotes - 19131 (source: NCBI BLink).  protein_id AT3G48170.1p  transcript_id AT3G48170.1  protein_id AT3G48170.1p  transcript_id AT3G48170.1  
At3g48180	chr3:017790571	0.0	C/17790571-17790804	AT3G48180.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19020.1); Has 56 Blast hits to 56 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G48180.1p  transcript_id AT3G48180.1  protein_id AT3G48180.1p  transcript_id AT3G48180.1  
At3g48185	chr3:017793050	0.0	C/17793050-17793307	AT3G48185.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G48185.1p  transcript_id AT3G48185.1  protein_id AT3G48185.1p  transcript_id AT3G48185.1  
At3g48190	chr3:017797628	0.0	W/17797628-17800135,17801863-17801971,17802058-17802201,17802546-17802707,17802818-17803013,17803104-17803260,17803380-17803516,17803613-17803700,17804055-17804158,17804480-17804578,17805227-17805283,17805505-17805586,17806126-17806200,17806721-17806762,17806838-17806908,17807141-17807189,17807321-17807392,17807816-17807953,17808052-17808138,17808219-17808403,17808772-17809354,17809437-17809508,17809640-17809810,17809889-17810014,17810486-17810613,17811174-17811330,17811434-17811480,17811560-17811623,17811784-17811858,17812333-17812452,17812659-17812844,17813055-17813176,17813255-17813324,17813419-17813546,17813703-17813844,17813950-17814090,17814187-17814422,17814943-17815129,17815206-17815427,17815928-17815999,17816328-17816397,17816895-17817012,17817109-17817232,17817637-17817771,17818013-17818105,17818581-17818628,17818716-17818820,17819081-17819167,17819484-17819801,17820088-17820200,17820552-17820618,17820707-17820781,17821280-17821402,17821645-17821809,17821887-17821985,17822327-17822478,17822599-17822803,17823033-17823047,17823208-17823291,17823408-17823491,17824231-17824311,17824428-17824517,17824594-17824656,17824935-17825075,17825160-17825216,17825304-17825363,17825823-17825917,17826028-17826136,17826329-17826418,17826521-17826600,17826699-17826777,17826876-17826922,17827001-17827100,17827238-17827369,17827491-17827625,17827713-17827778,17828032-17828175,17828284-17828361	AT3G48190.1  CDS  gene_syn ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ATATM, ATAXIA-TELANGIECTASIA MUTATED, ATM  gene ATM  function encodes a homolog of the human ATM gene, which is mutated in ataxia telangiectasia, a chromosome instability disorder. Characterization of mutants suggest a role in repairing DNA in response to ionizing radiation as well as during meiosis. The protein has kinase domains and shows kinase activity in orthologs. There is also evidence that ATM might be involved in the telomerase-independent process known as Alternative Lengthening of Telomeres.  go_component chloroplast|GO:0009507|15028209|IDA  go_process DNA repair|GO:0006281|12509526|IMP  go_process meiosis|GO:0007126|12509526|IMP  go_process reciprocal meiotic recombination|GO:0007131|12509526|IMP  go_process response to ionizing radiation|GO:0010212|12509526|IMP  go_process response to gamma radiation|GO:0010332|17227549|IMP  go_process regulation of telomere maintenance|GO:0032204|17989233|IGI  go_process multicellular organism reproduction|GO:0032504|16166376|IGI  go_process regulation of chromosome organization|GO:0033044|17989233|IGI  go_process telomere maintenance in response to DNA damage|GO:0043247|16166376|TAS  go_function 1-phosphatidylinositol-3-phosphate 5-kinase activity|GO:0000285|12509526|TAS  product ATM (ATAXIA-TELANGIECTASIA MUTATED); 1-phosphatidylinositol-3-phosphate 5-kinase  note ATAXIA-TELANGIECTASIA MUTATED (ATM); FUNCTIONS IN: 1-phosphatidylinositol-3-phosphate 5-kinase activity; INVOLVED IN: in 9 processes; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3- and 4-kinase, catalytic (InterPro:IPR000403), Protein kinase-like (InterPro:IPR011009), PIK-related kinase, FAT (InterPro:IPR003151), Ataxia-Telangiectasia Mutated (InterPro:IPR015519), PIK-related kinase (InterPro:IPR014009), PWWP (InterPro:IPR000313), PIK-related kinase, FATC (InterPro:IPR003152), Phosphatidylinositol 3- and 4-kinase, conserved site (InterPro:IPR018936); BEST Arabidopsis thaliana protein match is: ATRAD3; binding / inositol or phosphatidylinositol kinase/ phosphotransferase, alcohol group as acceptor / protein serine/threonine kinase (TAIR:AT5G40820.1); Has 297 Blast hits to 269 proteins in 70 species: Archae - 0; Bacteria - 3; Metazoa - 126; Fungi - 43; Plants - 116; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G48190.1p  transcript_id AT3G48190.1  protein_id AT3G48190.1p  transcript_id AT3G48190.1  
At3g48195	chr3:017831186	0.0	C/17831186-17832388,17829857-17830846,17829496-17829721,17829139-17829281,17828706-17828960	AT3G48195.1  CDS  go_process cell communication|GO:0007154||IEA  go_function protein binding|GO:0005515||IEA  go_function phosphoinositide binding|GO:0035091||IEA  go_process intracellular signaling cascade|GO:0007242||ISS  product phox (PX) domain-containing protein  note phox (PX) domain-containing protein; FUNCTIONS IN: protein binding, phosphoinositide binding; INVOLVED IN: intracellular signaling cascade, cell communication; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Phox-like (InterPro:IPR001683); Has 542 Blast hits to 489 proteins in 75 species: Archae - 0; Bacteria - 11; Metazoa - 472; Fungi - 6; Plants - 12; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT3G48195.1p  transcript_id AT3G48195.1  protein_id AT3G48195.1p  transcript_id AT3G48195.1  
At3g48200	chr3:017837159	0.0	C/17837159-17837371,17836892-17837027,17836659-17836795,17836363-17836564,17836047-17836285,17835834-17835945,17835608-17835752,17835371-17835513,17835106-17835275,17834708-17834998,17834575-17834630,17834226-17834440,17832949-17834156	AT3G48200.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 140 Blast hits to 100 proteins in 24 species: Archae - 0; Bacteria - 73; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT3G48200.1p  transcript_id AT3G48200.1  protein_id AT3G48200.1p  transcript_id AT3G48200.1  
At3g48201	chr3:017838135	0.0	C/17838135-17838266	AT3G48201.1  miRNA  gene_syn MICRORNA861A, MIR861A  gene MIR861A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: GAUGGAUAUGUCUUCAAGGAC  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR861A (MICRORNA861A); miRNA  transcript_id AT3G48201.1  
At3g48205	chr3:017840654	0.0	W/17840654-17840831,17841139-17841257	AT3G48205.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G48205.1p  transcript_id AT3G48205.1  protein_id AT3G48205.1p  transcript_id AT3G48205.1  
At3g48208	chr3:017846073	0.0	W/17846073-17846342	AT3G48208.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G48208.1p  transcript_id AT3G48208.1  protein_id AT3G48208.1p  transcript_id AT3G48208.1  
At3g48209	chr3:017847681	0.0	W/17847681-17847884	AT3G48209.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G48209.1p  transcript_id AT3G48209.1  protein_id AT3G48209.1p  transcript_id AT3G48209.1  
At3g48210	chr3:017849435	0.0	W/17849435-17849618,17849787-17849852,17849999-17850145,17850313-17850426,17850520-17850609,17850718-17850840,17850959-17851170,17851385-17851396	AT3G48210.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Kinetochore-Ndc80 complex, subunit Spc25 (InterPro:IPR013255); Has 142 Blast hits to 142 proteins in 51 species: Archae - 0; Bacteria - 2; Metazoa - 61; Fungi - 34; Plants - 34; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT3G48210.1p  transcript_id AT3G48210.1  protein_id AT3G48210.1p  transcript_id AT3G48210.1  
At3g48220	chr3:017853514	0.0	C/17853514-17853557,17852284-17852884	AT3G48220.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28223.1); Has 37 Blast hits to 36 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G48220.1p  transcript_id AT3G48220.1  protein_id AT3G48220.1p  transcript_id AT3G48220.1  
At3g48230	chr3:017855715	0.0	W/17855715-17855783,17855964-17856050,17856206-17856418,17856527-17856700,17856824-17856877,17857421-17857567,17857642-17858019	AT3G48230.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18460.1); Has 435 Blast hits to 402 proteins in 18 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 10; Plants - 419; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G48230.1p  transcript_id AT3G48230.1  protein_id AT3G48230.1p  transcript_id AT3G48230.1  
At3g48231	chr3:017858739	0.0	C/17858739-17858823,17858379-17858536	AT3G48231.1  CDS  gene_syn LCR48, Low-molecular-weight cysteine-rich 48  gene LCR48  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR48 (Low-molecular-weight cysteine-rich 48)  note Low-molecular-weight cysteine-rich 48 (LCR48); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: LCR49 (Low-molecular-weight cysteine-rich 49) (TAIR:AT2G33233.1); Has 25 Blast hits to 25 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G48231.1p  transcript_id AT3G48231.1  protein_id AT3G48231.1p  transcript_id AT3G48231.1  
At3g48235	chr3:017863754	0.0	W/17863754-17865925	AT3G48235.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to Hypothetical protein with similarity to putative Ac-like transposases, similar to Ac-like transposase; blastp match of 43% identity and 7.9e-100 P-value to GP|20042974|gb|AAM08782.1|AC016780_12|AC016780 Hypothetical protein with similarity to putative Ac-like transposases {Oryza sativa}  
At3g48237	chr3:017866533	0.0	C/17866533-17866685	AT3G48237.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G48237.1p  transcript_id AT3G48237.1  protein_id AT3G48237.1p  transcript_id AT3G48237.1  
At3g48240	chr3:017867381	0.0	W/17867381-17867537,17867622-17868007	AT3G48240.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product octicosapeptide/Phox/Bem1p (PB1) domain-containing protein  note octicosapeptide/Phox/Bem1p (PB1) domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (TAIR:AT5G63130.1); Has 176 Blast hits to 176 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 176; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G48240.1p  transcript_id AT3G48240.1  protein_id AT3G48240.1p  transcript_id AT3G48240.1  
At3g48250	chr3:017870064	0.0	C/17870064-17871929	AT3G48250.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G02490.1); Has 9687 Blast hits to 3402 proteins in 122 species: Archae - 2; Bacteria - 0; Metazoa - 72; Fungi - 107; Plants - 9293; Viruses - 0; Other Eukaryotes - 213 (source: NCBI BLink).  protein_id AT3G48250.1p  transcript_id AT3G48250.1  protein_id AT3G48250.1p  transcript_id AT3G48250.1  
At3g48260	chr3:017875152	0.0	C/17875152-17875220,17875041-17875078,17874709-17874936,17874407-17874630,17874170-17874327,17873921-17874086,17873639-17873767,17873012-17873550	AT3G48260.1  CDS  gene_syn WNK3  gene WNK3  function Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases.  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468|12506983|TAS  go_function protein kinase activity|GO:0004672|12506983|TAS  go_function kinase activity|GO:0016301||ISS  product WNK3; kinase/ protein kinase  note WNK3; FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: WNK1 (WITH NO LYSINE (K) 1); kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT3G04910.1); Has 77843 Blast hits to 76999 proteins in 2478 species: Archae - 32; Bacteria - 5953; Metazoa - 33448; Fungi - 6946; Plants - 16548; Viruses - 386; Other Eukaryotes - 14530 (source: NCBI BLink).  protein_id AT3G48260.1p  transcript_id AT3G48260.1  protein_id AT3G48260.1p  transcript_id AT3G48260.1  
At3g48270	chr3:017876571	0.0	W/17876571-17877428,17877562-17878173	AT3G48270.1  CDS  gene_syn CYP71A26, T29H11.210  gene CYP71A26  function putative cytochrome P450  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71A26; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71A26; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP71A22; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G48310.1); Has 23140 Blast hits to 22976 proteins in 1218 species: Archae - 21; Bacteria - 1873; Metazoa - 10250; Fungi - 4369; Plants - 5837; Viruses - 3; Other Eukaryotes - 787 (source: NCBI BLink).  protein_id AT3G48270.1p  transcript_id AT3G48270.1  protein_id AT3G48270.1p  transcript_id AT3G48270.1  
At3g48280	chr3:017879594	0.0	W/17879594-17880451,17880550-17881164	AT3G48280.1  CDS  gene_syn CYP71A25, T29H11.200  gene CYP71A25  function putative cytochrome P450  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71A25; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71A25; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP71A26; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G48270.1); Has 22959 Blast hits to 22808 proteins in 1229 species: Archae - 21; Bacteria - 1905; Metazoa - 10203; Fungi - 4247; Plants - 5810; Viruses - 3; Other Eukaryotes - 770 (source: NCBI BLink).  protein_id AT3G48280.1p  transcript_id AT3G48280.1  protein_id AT3G48280.1p  transcript_id AT3G48280.1  
At3g48290	chr3:017882590	0.0	W/17882590-17883453,17883532-17884134	AT3G48290.1  CDS  gene_syn CYP71A24, T29H11.190  gene CYP71A24  function putative cytochrome P450  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71A24; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71A24; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP71A22; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G48310.1); Has 22285 Blast hits to 22128 proteins in 1181 species: Archae - 21; Bacteria - 1636; Metazoa - 10045; Fungi - 4200; Plants - 5670; Viruses - 3; Other Eukaryotes - 710 (source: NCBI BLink).  protein_id AT3G48290.1p  transcript_id AT3G48290.1  protein_id AT3G48290.1p  transcript_id AT3G48290.1  
At3g48300	chr3:017885524	0.0	W/17885524-17886375,17886519-17887118	AT3G48300.1  CDS  gene_syn CYP71A23  gene CYP71A23  function putative cytochrome P450  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function oxygen binding|GO:0019825||ISS  product CYP71A23; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71A23; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973); BEST Arabidopsis thaliana protein match is: CYP71A26; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G48270.1); Has 23030 Blast hits to 22912 proteins in 1230 species: Archae - 21; Bacteria - 1888; Metazoa - 10200; Fungi - 4377; Plants - 5727; Viruses - 3; Other Eukaryotes - 814 (source: NCBI BLink).  protein_id AT3G48300.1p  transcript_id AT3G48300.1  protein_id AT3G48300.1p  transcript_id AT3G48300.1  
At3g48298	chr3:017885542	0.0	C/17885542-17885667	AT3G48298.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G48298.1p  transcript_id AT3G48298.1  protein_id AT3G48298.1p  transcript_id AT3G48298.1  
At3g48310	chr3:017888192	0.0	W/17888192-17889052,17889138-17889749	AT3G48310.1  CDS  gene_syn CYP71A22  gene CYP71A22  function putative cytochrome P450  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function oxygen binding|GO:0019825||ISS  product CYP71A22; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71A22; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP71A21; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G48320.1); Has 23087 Blast hits to 22936 proteins in 1213 species: Archae - 19; Bacteria - 1820; Metazoa - 10220; Fungi - 4477; Plants - 5757; Viruses - 3; Other Eukaryotes - 791 (source: NCBI BLink).  protein_id AT3G48310.1p  transcript_id AT3G48310.1  protein_id AT3G48310.1p  transcript_id AT3G48310.1  
At3g48320	chr3:017891241	0.0	W/17891241-17892101,17892193-17892804	AT3G48320.1  CDS  gene_syn CYP71A21  gene CYP71A21  function putative cytochrome P450  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71A21; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71A21; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP71A22; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G48310.1); Has 22738 Blast hits to 22579 proteins in 1204 species: Archae - 21; Bacteria - 1730; Metazoa - 10172; Fungi - 4386; Plants - 5702; Viruses - 3; Other Eukaryotes - 724 (source: NCBI BLink).  protein_id AT3G48320.1p  transcript_id AT3G48320.1  protein_id AT3G48320.1p  transcript_id AT3G48320.1  
At3g48330	chr3:017893970	0.0	C/17893970-17893975,17893541-17893811,17893300-17893464,17892969-17893219	AT3G48330.1  CDS  gene_syn ATPIMT1, PIMT1, PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 1  gene PIMT1  function encodes protein-L-isoaspartate methyltransferase. Important for maintaining viability as the seed ages. Involved in germination.  go_function protein-L-isoaspartate (D-aspartate) O-methyltransferase activity|GO:0004719||IEA  go_component cellular_component|GO:0005575||ND  go_process protein modification process|GO:0006464||ISS  go_process aging|GO:0007568|19011119|IMP  go_process response to salt stress|GO:0009651|19011119|IMP  go_process response to abscisic acid stimulus|GO:0009737|19011119|IEP  go_process seed germination|GO:0009845|19011119|IMP  go_function protein-L-isoaspartate (D-aspartate) O-methyltransferase activity|GO:0004719||ISS  product PIMT1 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 1); protein-L-isoaspartate (D-aspartate) O-methyltransferase  note PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 1 (PIMT1); FUNCTIONS IN: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity; INVOLVED IN: response to salt stress, protein modification process, aging, seed germination, response to abscisic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: seedling, seed; EXPRESSED DURING: dry seed stage; CONTAINS InterPro DOMAIN/s: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (InterPro:IPR000682); BEST Arabidopsis thaliana protein match is: PIMT2 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 2); protein-L-isoaspartate (D-aspartate) O-methyltransferase (TAIR:AT5G50240.1); Has 3988 Blast hits to 3988 proteins in 932 species: Archae - 177; Bacteria - 2371; Metazoa - 290; Fungi - 76; Plants - 60; Viruses - 0; Other Eukaryotes - 1014 (source: NCBI BLink).  protein_id AT3G48330.1p  transcript_id AT3G48330.1  protein_id AT3G48330.1p  transcript_id AT3G48330.1  
At3g48330	chr3:017893970	0.0	C/17893970-17893975,17893541-17893811,17893300-17893464,17892969-17893219	AT3G48330.2  CDS  gene_syn ATPIMT1, PIMT1, PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 1  gene PIMT1  function encodes protein-L-isoaspartate methyltransferase. Important for maintaining viability as the seed ages. Involved in germination.  go_function protein-L-isoaspartate (D-aspartate) O-methyltransferase activity|GO:0004719||IEA  go_component cellular_component|GO:0005575||ND  go_process protein modification process|GO:0006464||ISS  go_process aging|GO:0007568|19011119|IMP  go_process response to salt stress|GO:0009651|19011119|IMP  go_process response to abscisic acid stimulus|GO:0009737|19011119|IEP  go_process seed germination|GO:0009845|19011119|IMP  go_function protein-L-isoaspartate (D-aspartate) O-methyltransferase activity|GO:0004719||ISS  product PIMT1 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 1); protein-L-isoaspartate (D-aspartate) O-methyltransferase  note PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 1 (PIMT1); FUNCTIONS IN: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity; INVOLVED IN: response to salt stress, protein modification process, aging, seed germination, response to abscisic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: seedling, seed; EXPRESSED DURING: dry seed stage; CONTAINS InterPro DOMAIN/s: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (InterPro:IPR000682); BEST Arabidopsis thaliana protein match is: PIMT2 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 2); protein-L-isoaspartate (D-aspartate) O-methyltransferase (TAIR:AT5G50240.1); Has 3988 Blast hits to 3988 proteins in 932 species: Archae - 177; Bacteria - 2371; Metazoa - 290; Fungi - 76; Plants - 60; Viruses - 0; Other Eukaryotes - 1014 (source: NCBI BLink).  protein_id AT3G48330.2p  transcript_id AT3G48330.2  protein_id AT3G48330.2p  transcript_id AT3G48330.2  
At3g48275	chr3:017894411	0.0	W/17894411-17894482	AT3G48275.1  tRNA  gene_syn 67262.TRNA-THR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Thr (anticodon: TGT)  transcript_id AT3G48275.1  
At3g48340	chr3:017897934	0.0	W/17897934-17898186,17898323-17898699,17898814-17899074	AT3G48340.1  CDS  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product cysteine-type endopeptidase/ cysteine-type peptidase  note cysteine-type endopeptidase/ cysteine-type peptidase; FUNCTIONS IN: cysteine-type peptidase activity, cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: cysteine proteinase, putative (TAIR:AT3G48350.1); Has 6143 Blast hits to 6088 proteins in 586 species: Archae - 30; Bacteria - 108; Metazoa - 2828; Fungi - 6; Plants - 1214; Viruses - 122; Other Eukaryotes - 1835 (source: NCBI BLink).  protein_id AT3G48340.1p  transcript_id AT3G48340.1  protein_id AT3G48340.1p  transcript_id AT3G48340.1  
At3g48344	chr3:017902088	0.0	C/17902088-17902255	AT3G48344.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G48344.1p  transcript_id AT3G48344.1  protein_id AT3G48344.1p  transcript_id AT3G48344.1  
At3g48346	chr3:017903304	0.0	W/17903304-17903462	AT3G48346.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G48346.1p  transcript_id AT3G48346.1  protein_id AT3G48346.1p  transcript_id AT3G48346.1  
At3g48350	chr3:017905752	0.0	W/17905752-17906193,17906356-17906735,17907098-17907370	AT3G48350.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product cysteine proteinase, putative  note cysteine proteinase, putative; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: cysteine proteinase, putative (TAIR:AT5G50260.1); Has 6178 Blast hits to 6131 proteins in 589 species: Archae - 25; Bacteria - 112; Metazoa - 2823; Fungi - 4; Plants - 1257; Viruses - 120; Other Eukaryotes - 1837 (source: NCBI BLink).  protein_id AT3G48350.1p  transcript_id AT3G48350.1  protein_id AT3G48350.1p  transcript_id AT3G48350.1  
At3g48360	chr3:017910313	0.0	C/17910313-17910471,17910093-17910235,17909585-17909888,17908972-17909312,17908482-17908629	AT3G48360.1  CDS  gene_syn ATBT2, BT2, BTB AND TAZ DOMAIN PROTEIN 2  gene BT2  function encodes a protein (BT2) that is an essential component of the TAC1-mediated telomerase activation pathway. Acts redundantly with BT3 and BT1 during female gametophyte development and with BT3 during male gametophyte development.  go_component nucleus|GO:0005634|19054356|IDA  go_component cytoplasm|GO:0005737|19054356|IDA  go_process embryo sac development|GO:0009553|19054356|IGI  go_process pollen development|GO:0009555|19054356|IGI  go_process response to auxin stimulus|GO:0009733|19054356|IEP  go_process positive regulation of telomerase activity|GO:0051973|17220202|IPI  go_function transcription factor activity|GO:0003700|17220202|IMP  go_function protein binding|GO:0005515||ISS  go_function transcription regulator activity|GO:0030528|10748221|TAS  product BT2 (BTB AND TAZ DOMAIN PROTEIN 2); protein binding / transcription factor/ transcription regulator  note BTB AND TAZ DOMAIN PROTEIN 2 (BT2); FUNCTIONS IN: protein binding, transcription factor activity, transcription regulator activity; INVOLVED IN: response to auxin stimulus, embryo sac development, positive regulation of telomerase activity, pollen development; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), Zinc finger, TAZ-type (InterPro:IPR000197), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BT1 (BTB AND TAZ DOMAIN PROTEIN 1); protein binding / transcription regulator (TAIR:AT5G63160.1); Has 919 Blast hits to 919 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 640; Fungi - 0; Plants - 236; Viruses - 2; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT3G48360.1p  transcript_id AT3G48360.1  protein_id AT3G48360.1p  transcript_id AT3G48360.1  
At3g48370	chr3:017914248	0.0	C/17914248-17914992	AT3G48370.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 7.2e-35 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea)  
At3g48380	chr3:017916468	0.0	W/17916468-17916642,17916892-17917248,17917334-17917602,17917701-17917788,17917892-17918052,17918201-17918291,17918552-17918674,17918761-17918808,17918892-17918968,17919240-17919328,17919409-17919520,17919606-17919708,17919870-17920099	AT3G48380.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Peptidase C78, ubiquitin fold modifier-specific peptidase 1 and 2 (InterPro:IPR012462); Has 257 Blast hits to 257 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 209; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT3G48380.2p  transcript_id AT3G48380.2  protein_id AT3G48380.2p  transcript_id AT3G48380.2  
At3g48380	chr3:017916468	0.0	W/17916468-17916642,17916892-17917248,17917334-17917602,17917701-17917788,17917892-17918067,17918201-17918291,17918552-17918674,17918761-17918808,17918892-17918968,17919240-17919328,17919409-17919520,17919606-17919708,17919870-17920099	AT3G48380.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Peptidase C78, ubiquitin fold modifier-specific peptidase 1 and 2 (InterPro:IPR012462); Has 257 Blast hits to 257 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 209; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT3G48380.1p  transcript_id AT3G48380.1  protein_id AT3G48380.1p  transcript_id AT3G48380.1  
At3g48390	chr3:017921274	0.0	W/17921274-17921358,17921454-17923270	AT3G48390.1  CDS  go_component cellular_component|GO:0005575||ND  product MA3 domain-containing protein  note MA3 domain-containing protein; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891); BEST Arabidopsis thaliana protein match is: MA3 domain-containing protein (TAIR:AT5G63190.2); Has 1440 Blast hits to 588 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 993; Fungi - 6; Plants - 337; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT3G48390.1p  transcript_id AT3G48390.1  protein_id AT3G48390.1p  transcript_id AT3G48390.1  
At3g48400	chr3:017923678	0.0	W/17923678-17925426,17925479-17925589	AT3G48400.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT5G22355.1); Has 1475 Blast hits to 501 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 21; Fungi - 0; Plants - 1448; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G48400.1p  transcript_id AT3G48400.1  protein_id AT3G48400.1p  transcript_id AT3G48400.1  
At3g48410	chr3:017928010	0.0	C/17928010-17928100,17926959-17927221,17926624-17926835,17926224-17926488,17925786-17926112	AT3G48410.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT2G36290.1); Has 636 Blast hits to 632 proteins in 162 species: Archae - 4; Bacteria - 324; Metazoa - 12; Fungi - 21; Plants - 191; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT3G48410.1p  transcript_id AT3G48410.1  protein_id AT3G48410.1p  transcript_id AT3G48410.1  
At3g48420	chr3:017929743	0.0	W/17929743-17930057,17930126-17930196,17930282-17930440,17930675-17930741,17930935-17931030,17931125-17931171,17931255-17931335,17931428-17931551	AT3G48420.1  CDS  gene_syn T29H11.1  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity|GO:0016787||ISS  product haloacid dehalogenase-like hydrolase family protein  note haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: haloacid dehalogenase-like hydrolase family protein (TAIR:AT4G39970.1); Has 7388 Blast hits to 7387 proteins in 1159 species: Archae - 34; Bacteria - 5445; Metazoa - 112; Fungi - 80; Plants - 209; Viruses - 3; Other Eukaryotes - 1505 (source: NCBI BLink).  protein_id AT3G48420.1p  transcript_id AT3G48420.1  protein_id AT3G48420.1p  transcript_id AT3G48420.1  
At3g48425	chr3:017931910	0.0	W/17931910-17932146,17932447-17932539,17932808-17932952,17933149-17933350,17933459-17933537,17933856-17933917,17934030-17934116,17934215-17934318,17934408-17934493	AT3G48425.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_process DNA repair|GO:0006281||IEA  go_function nuclease activity|GO:0004518||IEA  go_function hydrolase activity|GO:0016787||ISS  product endonuclease/exonuclease/phosphatase family protein  note endonuclease/exonuclease/phosphatase family protein; FUNCTIONS IN: hydrolase activity, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), Exodeoxyribonuclease III xth (InterPro:IPR004808); BEST Arabidopsis thaliana protein match is: ARP; DNA-(apurinic or apyrimidinic site) lyase (TAIR:AT2G41460.1); Has 3937 Blast hits to 3936 proteins in 1101 species: Archae - 54; Bacteria - 2118; Metazoa - 201; Fungi - 59; Plants - 62; Viruses - 0; Other Eukaryotes - 1443 (source: NCBI BLink).  protein_id AT3G48425.1p  transcript_id AT3G48425.1  protein_id AT3G48425.1p  transcript_id AT3G48425.1  
At3g48430	chr3:017935609	0.0	W/17935609-17936488,17936688-17936766,17936898-17936965,17937071-17937221,17937304-17937926,17937997-17938488,17938586-17938968,17939050-17940456	AT3G48430.1  CDS  gene_syn REF6, RELATIVE OF EARLY FLOWERING 6  gene REF6  function Relative of Early Flowering 6 (REF6) encodes a Jumonji N/C and zinc finger domain-containing protein that acts as a positive regulator of flowering in an FLC-dependent pathway. REF6 mutants have hyperacetylation of histone H4 at the FLC locus. REF6 interacts with BES1 in a Y2H assay and in vitro. REF6 may play a role in brassinoteroid signaling by affecting histone methylation in the promoters of BR-responsive genes. It is most closely related to the JHDM3 subfamily of JmjN/C proteins.  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634|15377760|IDA  go_process response to brassinosteroid stimulus|GO:0009741|18467490|IMP  go_process unidimensional cell growth|GO:0009826|18467490|IMP  go_process vegetative to reproductive phase transition|GO:0010228|15377760|IMP  go_process histone H3-K9 demethylation|GO:0033169|18467490|IMP  go_process negative regulation of histone acetylation|GO:0035067|15377760|IMP  go_process leaf development|GO:0048366|18467490|IMP  go_function transcription factor activity|GO:0003700||ISS  product REF6 (RELATIVE OF EARLY FLOWERING 6); nucleic acid binding / transcription factor/ zinc ion binding  note RELATIVE OF EARLY FLOWERING 6 (REF6); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, C2H2-like (InterPro:IPR015880), Transcription factor jumonji (InterPro:IPR013129), Zinc finger, C2H2-type (InterPro:IPR007087), Transcription factor jumonji, JmjN (InterPro:IPR003349), Zinc finger, C2H2-type/integrase, DNA-binding (InterPro:IPR013087); BEST Arabidopsis thaliana protein match is: ELF6 (EARLY FLOWERING 6); transcription factor (TAIR:AT5G04240.1); Has 89828 Blast hits to 30176 proteins in 751 species: Archae - 0; Bacteria - 9; Metazoa - 85212; Fungi - 1523; Plants - 293; Viruses - 3; Other Eukaryotes - 2788 (source: NCBI BLink).  protein_id AT3G48430.1p  transcript_id AT3G48430.1  protein_id AT3G48430.1p  transcript_id AT3G48430.1  
At3g48440	chr3:017941402	0.0	W/17941402-17941827,17942102-17942170,17942340-17942459,17942551-17942838,17942931-17943206,17943409-17943576	AT3G48440.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc finger (CCCH-type) family protein  note zinc finger (CCCH-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein (TAIR:AT5G63260.1); Has 1145 Blast hits to 712 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 339; Fungi - 164; Plants - 533; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).  protein_id AT3G48440.1p  transcript_id AT3G48440.1  protein_id AT3G48440.1p  transcript_id AT3G48440.1  
At3g48450	chr3:017944780	0.0	C/17944780-17944788,17944342-17944578,17944232-17944255	AT3G48450.1  CDS  go_component cellular_component|GO:0005575||ND  go_process response to nitrate|GO:0010167||ISS  go_function molecular_function|GO:0003674||ND  product nitrate-responsive NOI protein, putative  note nitrate-responsive NOI protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to nitrate; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Defence response, Rin4 (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: nitrate-responsive NOI protein, putative (TAIR:AT5G63270.1); Has 153 Blast hits to 152 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G48450.1p  transcript_id AT3G48450.1  protein_id AT3G48450.1p  transcript_id AT3G48450.1  
At3g48460	chr3:017949496	0.0	W/17949496-17950137,17950499-17950680,17950761-17951082	AT3G48460.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process glycerol biosynthetic process|GO:0006114||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: glycerol biosynthetic process, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: lipase, putative (TAIR:AT1G28650.1); Has 1735 Blast hits to 1709 proteins in 121 species: Archae - 0; Bacteria - 160; Metazoa - 1; Fungi - 6; Plants - 1561; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT3G48460.1p  transcript_id AT3G48460.1  protein_id AT3G48460.1p  transcript_id AT3G48460.1  
At3g48470	chr3:017951689	0.0	W/17951689-17951854,17952022-17952204,17952332-17952503,17952942-17953097,17953317-17953405,17953728-17954096,17954302-17954439,17954536-17954670,17954756-17955261,17955367-17956130,17956220-17956418,17956578-17956754	AT3G48470.1  CDS  gene_syn EMB2423, EMBRYO DEFECTIVE 2423  gene EMB2423  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product EMB2423 (EMBRYO DEFECTIVE 2423)  note EMBRYO DEFECTIVE 2423 (EMB2423); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; Has 192 Blast hits to 187 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 93; Fungi - 60; Plants - 31; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT3G48470.1p  transcript_id AT3G48470.1  protein_id AT3G48470.1p  transcript_id AT3G48470.1  
At3g48480	chr3:017958981	0.0	C/17958981-17959062,17958352-17958592,17958098-17958271,17957886-17958014,17957701-17957782,17957510-17957620,17957326-17957403	AT3G48480.1  CDS  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_component cellular_component|GO:0005575||ND  product cysteine-type peptidase  note cysteine-type peptidase; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: Ulp1 protease family protein (TAIR:AT4G33620.1); Has 53 Blast hits to 53 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G48480.1p  transcript_id AT3G48480.1  protein_id AT3G48480.1p  transcript_id AT3G48480.1  
At3g48490	chr3:017961338	0.0	W/17961338-17961431,17961532-17961800	AT3G48490.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; Has 8 Blast hits to 8 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G48490.1p  transcript_id AT3G48490.1  protein_id AT3G48490.1p  transcript_id AT3G48490.1  
At3g48500	chr3:017962209	0.0	W/17962209-17962937,17963029-17963088,17963183-17963212,17963291-17963364,17963505-17963586,17963674-17963747,17963869-17963935,17964021-17964113,17964227-17964403,17964481-17964531,17964769-17964920,17964991-17965408	AT3G48500.1  CDS  gene_syn PDE312, PIGMENT DEFECTIVE 312, PLASTID TRANSCRIPTIONALLY ACTIVE 10, PTAC10  gene PDE312  go_component nucleoid|GO:0009295|16326926|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_function RNA binding|GO:0003723||IEA  go_component plastid chromosome|GO:0009508|16326926|IDA  product RNA binding  note PIGMENT DEFECTIVE 312 (PDE312); FUNCTIONS IN: RNA binding; LOCATED IN: plastid chromosome, chloroplast, nucleoid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), S1, RNA binding (InterPro:IPR003029); Has 76 Blast hits to 74 proteins in 29 species: Archae - 0; Bacteria - 6; Metazoa - 7; Fungi - 7; Plants - 22; Viruses - 14; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT3G48500.1p  transcript_id AT3G48500.1  protein_id AT3G48500.1p  transcript_id AT3G48500.1  
At3g48500	chr3:017962209	0.0	W/17962209-17962937,17963029-17963088,17963183-17963212,17963291-17963364,17963505-17963747,17963869-17963935,17964021-17964113,17964227-17964403,17964481-17964531,17964769-17964920,17964991-17965408	AT3G48500.2  CDS  gene_syn PDE312, PIGMENT DEFECTIVE 312, PLASTID TRANSCRIPTIONALLY ACTIVE 10, PTAC10  gene PDE312  go_component chloroplast|GO:0009507|18431481|IDA  go_function RNA binding|GO:0003723||IEA  go_component plastid chromosome|GO:0009508|16326926|IDA  product RNA binding  note PIGMENT DEFECTIVE 312 (PDE312); FUNCTIONS IN: RNA binding; LOCATED IN: plastid chromosome, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), S1, RNA binding (InterPro:IPR003029); Has 68 Blast hits to 66 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 7; Plants - 20; Viruses - 14; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT3G48500.2p  transcript_id AT3G48500.2  protein_id AT3G48500.2p  transcript_id AT3G48500.2  
At3g48510	chr3:017967568	0.0	C/17967568-17968452	AT3G48510.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G63350.1); Has 35 Blast hits to 35 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G48510.1p  transcript_id AT3G48510.1  protein_id AT3G48510.1p  transcript_id AT3G48510.1  
At3g48515	chr3:017974591	0.0	C/17974591-17974626	AT3G48515.1  tRNA  gene_syn 67263.TRNA-TYR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT3G48515.1  
At3g48520	chr3:017975104	0.0	C/17975104-17976624	AT3G48520.1  CDS  gene_syn CYP94B3  gene CYP94B3  function member of CYP94B  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP94B3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP94B3; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP94B1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT5G63450.1); Has 20131 Blast hits to 20051 proteins in 1053 species: Archae - 19; Bacteria - 1533; Metazoa - 9387; Fungi - 3690; Plants - 4694; Viruses - 3; Other Eukaryotes - 805 (source: NCBI BLink).  protein_id AT3G48520.1p  transcript_id AT3G48520.1  protein_id AT3G48520.1p  transcript_id AT3G48520.1  
At3g48523	chr3:017979164	0.0	C/17979164-17983387	AT3G48523.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At3g48526	chr3:017984171	0.0	W/17984171-17985383	AT3G48526.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 5.7e-41 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element)  
At3g48530	chr3:017987559	0.0	W/17987559-17987763,17988146-17988318,17988437-17988592,17988686-17988961,17989040-17989203,17989292-17989592	AT3G48530.1  CDS  gene_syn KING1, SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1  gene KING1  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product KING1 (SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1)  note SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1 (KING1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein (TAIR:AT1G69800.2); Has 1838 Blast hits to 1829 proteins in 530 species: Archae - 94; Bacteria - 923; Metazoa - 290; Fungi - 92; Plants - 72; Viruses - 0; Other Eukaryotes - 367 (source: NCBI BLink).  protein_id AT3G48530.1p  transcript_id AT3G48530.1  protein_id AT3G48530.1p  transcript_id AT3G48530.1  
At3g48540	chr3:017991825	0.0	C/17991825-17992015,17991618-17991693,17991181-17991220,17990979-17991037,17990825-17990862,17990595-17990658,17990275-17990328,17989974-17990075,17989798-17989872	AT3G48540.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function hydrolase activity|GO:0016787||IEA  go_process biological_process|GO:0008150||ND  go_function zinc ion binding|GO:0008270||ISS  go_function hydrolase activity|GO:0016787||ISS  product cytidine/deoxycytidylate deaminase family protein  note cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: hydrolase activity, zinc ion binding, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Cytidine deaminase (InterPro:IPR015517); Has 2325 Blast hits to 2322 proteins in 709 species: Archae - 45; Bacteria - 1087; Metazoa - 181; Fungi - 86; Plants - 21; Viruses - 65; Other Eukaryotes - 840 (source: NCBI BLink).  protein_id AT3G48540.1p  transcript_id AT3G48540.1  protein_id AT3G48540.1p  transcript_id AT3G48540.1  
At3g48550	chr3:017994048	0.0	W/17994048-17994394,17994466-17994595	AT3G48550.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT2G01940.3); Has 40 Blast hits to 40 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G48550.1p  transcript_id AT3G48550.1  protein_id AT3G48550.1p  transcript_id AT3G48550.1  
At3g48560	chr3:018001530	0.0	C/18001530-18003542	AT3G48560.1  CDS  gene_syn ACETOHYDROXY ACID SYNTHASE, ACETOLACTATE SYNTHASE, AHAS, ALS, CHLORSULFURON/IMIDAZOLINONE RESISTANT 1, CSR1, IMIDAZOLE RESISTANT 1, IMR1, TRIAZOLOPYRIMIDINE RESISTANT 5, TZP5  gene CSR1  function Catalyzes the formation of acetolactate from pyruvate, the first step in valine and isoleucine biosynthesis. Requires FAD, thiamine pyrophosphate and Mg. Inhibited by the sulphonylurea herbicide, chlorsulphuron, and the imidazolinone herbicide, imazapyr. The obtained crystal structure of acetohydroxyacid synthase AHAS, EC 2.2.1.6)in complex with herbicides of the sulphonylurea and imidazolinone family reveals the molecular basis for substrate/inhibitor binding.  go_component chloroplast|GO:0009507|18431481|IDA  go_process branched chain family amino acid biosynthetic process|GO:0009082||TAS  go_function acetolactate synthase activity|GO:0003984|8177214|IDA  go_function pyruvate decarboxylase activity|GO:0004737||TAS  product CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1); acetolactate synthase/ pyruvate decarboxylase  note CHLORSULFURON/IMIDAZOLINONE RESISTANT 1 (CSR1); FUNCTIONS IN: acetolactate synthase activity, pyruvate decarboxylase activity; INVOLVED IN: branched chain family amino acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TPP-binding enzymes, conserved site (InterPro:IPR000399), Thiamine pyrophosphate enzyme, central region (InterPro:IPR012000), Acetolactate synthase, large subunit, biosynthetic (InterPro:IPR012846), Thiamine pyrophosphate enzyme, N-terminal TPP binding region (InterPro:IPR012001), Thiamine pyrophosphate enzyme, C-terminal TPP-binding (InterPro:IPR011766); BEST Arabidopsis thaliana protein match is: pyruvate decarboxylase family protein (TAIR:AT5G17380.1); Has 22222 Blast hits to 21939 proteins in 1524 species: Archae - 268; Bacteria - 9392; Metazoa - 230; Fungi - 588; Plants - 450; Viruses - 23; Other Eukaryotes - 11271 (source: NCBI BLink).  protein_id AT3G48560.1p  transcript_id AT3G48560.1  protein_id AT3G48560.1p  transcript_id AT3G48560.1  
At3g48570	chr3:018004819	0.0	C/18004819-18004912,18004604-18004719	AT3G48570.1  CDS  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein targeting|GO:0006605||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process protein transport|GO:0015031||IEA  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||IEA  go_process protein targeting|GO:0006605||ISS  go_process intracellular protein transport|GO:0006886||ISS  product protein transport protein SEC61 gamma subunit, putative  note protein transport protein SEC61 gamma subunit, putative; FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, protein targeting, protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein translocase SEC61 complex gamma subunit (InterPro:IPR008158), Protein secE/sec61-gamma protein (InterPro:IPR001901); BEST Arabidopsis thaliana protein match is: protein transport protein SEC61 gamma subunit, putative (TAIR:AT5G50460.1); Has 405 Blast hits to 405 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 184; Fungi - 85; Plants - 66; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT3G48570.1p  transcript_id AT3G48570.1  protein_id AT3G48570.1p  transcript_id AT3G48570.1  
At3g48580	chr3:018007238	0.0	W/18007238-18007427,18007514-18007614,18007716-18007906,18007990-18008341	AT3G48580.1  CDS  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process cellular glucan metabolic process|GO:0006073||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762||IEA  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative  note xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, apoplast, cell wall; EXPRESSED IN: embryo, flower, pedicel, carpel; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: XTH3 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3); hydrolase, acting on glycosyl bonds / xyloglucan:xyloglucosyl transferase (TAIR:AT3G25050.1); Has 1045 Blast hits to 1039 proteins in 157 species: Archae - 2; Bacteria - 141; Metazoa - 0; Fungi - 58; Plants - 789; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT3G48580.1p  transcript_id AT3G48580.1  protein_id AT3G48580.1p  transcript_id AT3G48580.1  
At3g48590	chr3:018009238	0.0	C/18009238-18009938,18008893-18008896	AT3G48590.1  CDS  gene_syn ATHAP5A, HAP5A, NF-YC1, NUCLEAR FACTOR Y, SUBUNIT C1  gene NF-YC1  function Encodes a protein with similarity to a subunit of the CCAAT promoter motif binding complex of yeast.One of two members of this class (HAP5A) and expressed in vegetative and reproductive tissues.  go_component nucleus|GO:0005634|10446203|IC  go_component nucleus|GO:0005634|17138697|IDA  go_component nucleus|GO:0005634||ISS  go_component CCAAT-binding factor complex|GO:0016602|9662544|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355|10446203|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355|9662544|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process positive regulation of gene-specific transcription|GO:0043193|19207209|IDA  go_function DNA binding|GO:0003677|10446203|ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9662544|ISS  go_function transcription activator activity|GO:0016563|19207209|IDA  product NF-YC1 (NUCLEAR FACTOR Y, SUBUNIT C1); DNA binding / transcription activator/ transcription factor  note NUCLEAR FACTOR Y, SUBUNIT C1 (NF-YC1); FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, positive regulation of gene-specific transcription; LOCATED IN: CCAAT-binding factor complex, nucleus; EXPRESSED IN: flower, root, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4); DNA binding / transcription factor (TAIR:AT5G63470.2); Has 930 Blast hits to 930 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 364; Fungi - 232; Plants - 254; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT3G48590.1p  transcript_id AT3G48590.1  protein_id AT3G48590.1p  transcript_id AT3G48590.1  
At3g48600	chr3:018011145	0.0	C/18011145-18011363,18010687-18011016,18010289-18010291	AT3G48600.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SWIB complex BAF60b domain-containing protein  note SWIB complex BAF60b domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 (InterPro:IPR003121); BEST Arabidopsis thaliana protein match is: SWIB complex BAF60b domain-containing protein (TAIR:AT1G31760.1); Has 193 Blast hits to 188 proteins in 49 species: Archae - 0; Bacteria - 8; Metazoa - 1; Fungi - 52; Plants - 116; Viruses - 3; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT3G48600.1p  transcript_id AT3G48600.1  protein_id AT3G48600.1p  transcript_id AT3G48600.1  
At3g48610	chr3:018013370	0.0	C/18013370-18013959,18012690-18013192,18011653-18012122	AT3G48610.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||ISS  product phosphoesterase family protein  note phosphoesterase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoesterase (InterPro:IPR007312); BEST Arabidopsis thaliana protein match is: hydrolase, acting on ester bonds (TAIR:AT1G07230.1); Has 1486 Blast hits to 1406 proteins in 237 species: Archae - 10; Bacteria - 1240; Metazoa - 0; Fungi - 98; Plants - 90; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT3G48610.1p  transcript_id AT3G48610.1  protein_id AT3G48610.1p  transcript_id AT3G48610.1  
At3g48620	chr3:018016175	0.0	W/18016175-18016272,18016622-18016691,18016764-18016859,18016964-18017079,18017184-18017322,18017430-18017502,18017587-18017750	AT3G48620.1  CDS  go_component outer membrane|GO:0019867||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: outer membrane; CONTAINS InterPro DOMAIN/s: Bacterial surface antigen (D15) (InterPro:IPR000184); BEST Arabidopsis thaliana protein match is: chloroplast outer membrane protein-related (TAIR:AT3G44160.1); Has 304 Blast hits to 304 proteins in 68 species: Archae - 0; Bacteria - 126; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT3G48620.1p  transcript_id AT3G48620.1  protein_id AT3G48620.1p  transcript_id AT3G48620.1  
At3g48630	chr3:018018687	0.0	C/18018687-18018782,18018536-18018594,18018234-18018465	AT3G48630.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44150.1); Has 35 Blast hits to 35 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G48630.1p  transcript_id AT3G48630.1  protein_id AT3G48630.1p  transcript_id AT3G48630.1  
At3g48640	chr3:018021650	0.0	C/18021650-18022324	AT3G48640.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66670.2); Has 30 Blast hits to 30 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G48640.1p  transcript_id AT3G48640.1  protein_id AT3G48640.1p  transcript_id AT3G48640.1  
At3g48650	chr3:018024663	0.0	W/18024663-18026149	AT3G48650.1  pseudogenic_transcript  pseudo  note pseudogene, At14a-related protein, similar to At14a (GI:11994571 and GI:11994573) (Arabidopsis thaliana)  
At3g48660	chr3:018029659	0.0	W/18029659-18029863,18030069-18030133	AT3G48660.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G63500.1); Has 168 Blast hits to 167 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 168; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G48660.1p  transcript_id AT3G48660.1  protein_id AT3G48660.1p  transcript_id AT3G48660.1  
At3g48670	chr3:018031240	0.0	W/18031240-18031636,18031722-18032443,18032518-18032607,18032685-18032972,18033080-18033289,18033379-18033615	AT3G48670.1  CDS  go_process response to cadmium ion|GO:0046686|17075075|IEP  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product XH/XS domain-containing protein / XS zinc finger domain-containing protein  note XH/XS domain-containing protein / XS zinc finger domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Region of unknown function XS (InterPro:IPR005380), Region of unknown function XH (InterPro:IPR005379), Region of unknown function, putative Zinc finger, XS and XH (InterPro:IPR005381); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein / XS zinc finger domain-containing protein (TAIR:AT3G12550.1); Has 63472 Blast hits to 34880 proteins in 1446 species: Archae - 654; Bacteria - 5742; Metazoa - 32286; Fungi - 3507; Plants - 1699; Viruses - 217; Other Eukaryotes - 19367 (source: NCBI BLink).  protein_id AT3G48670.1p  transcript_id AT3G48670.1  protein_id AT3G48670.1p  transcript_id AT3G48670.1  
At3g48670	chr3:018031240	0.0	W/18031240-18031636,18031722-18032443,18032518-18032607,18032685-18032972,18033080-18033289,18033379-18033615	AT3G48670.2  CDS  go_process response to cadmium ion|GO:0046686|17075075|IEP  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product XH/XS domain-containing protein / XS zinc finger domain-containing protein  note XH/XS domain-containing protein / XS zinc finger domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Region of unknown function XS (InterPro:IPR005380), Region of unknown function XH (InterPro:IPR005379), Region of unknown function, putative Zinc finger, XS and XH (InterPro:IPR005381); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein / XS zinc finger domain-containing protein (TAIR:AT3G12550.1); Has 63472 Blast hits to 34880 proteins in 1446 species: Archae - 654; Bacteria - 5742; Metazoa - 32286; Fungi - 3507; Plants - 1699; Viruses - 217; Other Eukaryotes - 19367 (source: NCBI BLink).  protein_id AT3G48670.2p  transcript_id AT3G48670.2  protein_id AT3G48670.2p  transcript_id AT3G48670.2  
At3g48675	chr3:018034192	0.0	W/18034192-18034551	AT3G48675.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52975.1); Has 91 Blast hits to 88 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G48675.1p  transcript_id AT3G48675.1  protein_id AT3G48675.1p  transcript_id AT3G48675.1  
At3g48680	chr3:018035107	0.0	W/18035107-18035500,18036397-18036773	AT3G48680.1  CDS  gene_syn GAMMA CAL2, GAMMA CARBONIC ANHYDRASE-LIKE 2  gene GAMMA CAL2  function Encodes a mitochondrial gamma carbonic anhydrase-like protein. Component of the NADH dehydrogenase complex.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_function transferase activity|GO:0016740||IEA  go_component mitochondrion|GO:0005739|11743114|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|12837548|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial membrane|GO:0031966|16407270|IDA  go_component respiratory chain complex I|GO:0045271|16407270|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process photorespiration|GO:0009853|16407270|TAS  product GAMMA CAL2 (GAMMA CARBONIC ANHYDRASE-LIKE 2); transferase  note GAMMA CARBONIC ANHYDRASE-LIKE 2 (GAMMA CAL2); FUNCTIONS IN: transferase activity; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, plasma membrane, chloroplast, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), Bacterial transferase hexapeptide repeat (InterPro:IPR001451); BEST Arabidopsis thaliana protein match is: GAMMA CAL1 (GAMMA CARBONIC ANHYDRASE LIKE 1); carbonate dehydratase (TAIR:AT5G63510.1); Has 4199 Blast hits to 4180 proteins in 982 species: Archae - 91; Bacteria - 2240; Metazoa - 11; Fungi - 8; Plants - 94; Viruses - 0; Other Eukaryotes - 1755 (source: NCBI BLink).  protein_id AT3G48680.1p  transcript_id AT3G48680.1  protein_id AT3G48680.1p  transcript_id AT3G48680.1  
At3g48690	chr3:018037186	0.0	C/18037186-18038160	AT3G48690.1  CDS  gene_syn ARABIDOPSIS THALIANA CARBOXYESTERASE 12, ATCXE12, CXE12  gene CXE12  function Encodes a protein with carboxylesterase whose activity was tested using both pNA and 2,4-D-methyl.  go_component cytoplasm|GO:0005737|17519238|NAS  go_process response to salt stress|GO:0009651|11351099|IEP  go_function carboxylesterase activity|GO:0004091|17519238|IDA  product CXE12; carboxylesterase  note CXE12; FUNCTIONS IN: carboxylesterase activity; INVOLVED IN: response to salt stress; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDXG, active site (InterPro:IPR002168), Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: ATCXE13 (ARABIDOPSIS THALIANA CARBOXYESTERASE 13); hydrolase (TAIR:AT3G48700.1); Has 5661 Blast hits to 5648 proteins in 836 species: Archae - 51; Bacteria - 2783; Metazoa - 732; Fungi - 549; Plants - 670; Viruses - 3; Other Eukaryotes - 873 (source: NCBI BLink).  protein_id AT3G48690.1p  transcript_id AT3G48690.1  protein_id AT3G48690.1p  transcript_id AT3G48690.1  
At3g48700	chr3:018038825	0.0	C/18038825-18039814	AT3G48700.1  CDS  gene_syn ARABIDOPSIS THALIANA CARBOXYESTERASE 13, ATCXE13  gene ATCXE13  go_process metabolic process|GO:0008152||IEA  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  product ATCXE13 (ARABIDOPSIS THALIANA CARBOXYESTERASE 13); hydrolase  note ARABIDOPSIS THALIANA CARBOXYESTERASE 13 (ATCXE13); FUNCTIONS IN: hydrolase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Lipase, GDXG, active site (InterPro:IPR002168), Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: CXE12; carboxylesterase (TAIR:AT3G48690.1); Has 6462 Blast hits to 6442 proteins in 908 species: Archae - 51; Bacteria - 3065; Metazoa - 1130; Fungi - 583; Plants - 666; Viruses - 3; Other Eukaryotes - 964 (source: NCBI BLink).  protein_id AT3G48700.1p  transcript_id AT3G48700.1  protein_id AT3G48700.1p  transcript_id AT3G48700.1  
At3g48710	chr3:018041024	0.0	W/18041024-18041290,18041378-18041411,18041524-18041603,18041746-18041805,18041896-18042009,18042092-18042172,18042275-18042346,18043031-18043445,18043525-18043616,18043708-18043738,18043853-18043995	AT3G48710.1  CDS  product unknown protein  note EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G63550.2); Has 48226 Blast hits to 25734 proteins in 1103 species: Archae - 54; Bacteria - 6881; Metazoa - 21026; Fungi - 4604; Plants - 1514; Viruses - 306; Other Eukaryotes - 13841 (source: NCBI BLink).  protein_id AT3G48710.1p  transcript_id AT3G48710.1  protein_id AT3G48710.1p  transcript_id AT3G48710.1  
At3g48720	chr3:018046527	0.0	W/18046527-18046958,18048435-18049295	AT3G48720.1  CDS  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT5G63560.1); Has 1508 Blast hits to 1495 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 159; Plants - 1348; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G48720.1p  transcript_id AT3G48720.1  protein_id AT3G48720.1p  transcript_id AT3G48720.1  
At3g48730	chr3:018049697	0.0	W/18049697-18049873,18050132-18050305,18050383-18051027,18051128-18051550	AT3G48730.1  CDS  gene_syn GSA2, glutamate-1-semialdehyde 2,1-aminomutase 2  gene GSA2  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function catalytic activity|GO:0003824||IEA  go_function transaminase activity|GO:0008483||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_function glutamate-1-semialdehyde 2,1-aminomutase activity|GO:0042286||IEA  go_component chloroplast|GO:0009507||ISS  go_process porphyrin biosynthetic process|GO:0006779|7908550|TAS  go_function glutamate-1-semialdehyde 2,1-aminomutase activity|GO:0042286||ISS  product GSA2 (glutamate-1-semialdehyde 2,1-aminomutase 2); catalytic/ glutamate-1-semialdehyde 2,1-aminomutase/ pyridoxal phosphate binding / transaminase  note glutamate-1-semialdehyde 2,1-aminomutase 2 (GSA2); FUNCTIONS IN: glutamate-1-semialdehyde 2,1-aminomutase activity, pyridoxal phosphate binding, transaminase activity, catalytic activity; INVOLVED IN: porphyrin biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase class-III (InterPro:IPR005814), Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase (InterPro:IPR004639), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: GSA1 (GLUTAMATE-1-SEMIALDEHYDE-2,1-AMINOMUTASE); glutamate-1-semialdehyde 2,1-aminomutase (TAIR:AT5G63570.1); Has 22952 Blast hits to 22949 proteins in 1683 species: Archae - 419; Bacteria - 12643; Metazoa - 453; Fungi - 515; Plants - 232; Viruses - 10; Other Eukaryotes - 8680 (source: NCBI BLink).  protein_id AT3G48730.1p  transcript_id AT3G48730.1  protein_id AT3G48730.1p  transcript_id AT3G48730.1  
At3g48740	chr3:018054612	0.0	C/18054612-18054663,18054441-18054477,18054127-18054337,18053863-18054024,18053648-18053767,18052814-18053101	AT3G48740.1  CDS  gene_syn T21J18.1  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  product nodulin MtN3 family protein  note nodulin MtN3 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MtN3 and saliva related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), MtN3 and saliva related transmembrane protein (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: MTN3 (Arabidopsis homolog of Medicago truncatula MTN3) (TAIR:AT5G23660.1); Has 582 Blast hits to 540 proteins in 94 species: Archae - 0; Bacteria - 2; Metazoa - 226; Fungi - 0; Plants - 290; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT3G48740.1p  transcript_id AT3G48740.1  protein_id AT3G48740.1p  transcript_id AT3G48740.1  
At3g48745	chr3:018069078	0.0	W/18069078-18069149	AT3G48745.1  tRNA  gene_syn 67264.TRNA-GLN-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gln (anticodon: TTG)  transcript_id AT3G48745.1  
At3g48750	chr3:018072238	0.0	W/18072238-18072246,18072320-18072504,18072589-18072709,18072805-18072978,18073235-18073398,18073597-18073684,18073787-18073840,18074207-18074296	AT3G48750.1  CDS  gene_syn CDC2, CDC2A, CDC2AAT, CDK2, CDKA1, CDKA;1, CELL DIVISION CONTROL 2, CYCLIN-DEPENDENT KINASE A;1, P34CDC2  gene CDC2  function A-type cyclin-dependent kinase. Together with its specific inhibitor, the Kip-related protein, KRP2 they regulate the mitosis-to-endocycle transition during leaf development. Dominant negative mutations abolish cell division. Loss of function phenotype has reduced fertility with failure to transmit via pollen. Pollen development is arrested at the second mitotic division. Expression is regulated by environmental and chemical signals. Part of the promoter is responsible for expression in trichomes. Functions as a positive regulator of cell proliferation during development of the male gametophyte, embryo and endosperm. Phosphorylation of threonine 161 is required for activation of its associated kinase.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component preprophase band|GO:0009574|9428718|TAS  go_component cortical microtubule, transverse to long axis|GO:0010005|9428718|IDA  go_process cytokinesis|GO:0000910|7664733|IMP  go_process meiosis|GO:0007126|17369369|IMP  go_process positive regulation of cell proliferation|GO:0008284|16460514|IMP  go_process response to cold|GO:0009409|8570631|IEP  go_process pollen development|GO:0009555|16311592|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|16460514|IMP  go_process DNA endoreduplication|GO:0042023|15863515|IMP  go_process gametophyte development|GO:0048229|17764501|IMP  go_function protein kinase activity|GO:0004672|16920782|IDA  go_function cyclin-dependent protein kinase activity|GO:0004693|1937013|ISS  go_function protein binding|GO:0005515|15863515|IPI  go_function protein binding|GO:0005515|17426018|IPI  go_function kinase activity|GO:0016301|17369369|IMP  go_function kinase activity|GO:0016301||ISS  product CDC2 (CELL DIVISION CONTROL 2); cyclin-dependent protein kinase/ kinase/ protein binding / protein kinase  note CELL DIVISION CONTROL 2 (CDC2); FUNCTIONS IN: protein binding, protein kinase activity, kinase activity, cyclin-dependent protein kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: cytosol, cortical microtubule, transverse to long axis, nucleus, plasma membrane, preprophase band; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CDKB1;2 (cyclin-dependent kinase B1;2); cyclin binding / kinase/ protein serine/threonine kinase (TAIR:AT2G38620.2); Has 92304 Blast hits to 90701 proteins in 2897 species: Archae - 55; Bacteria - 7783; Metazoa - 40110; Fungi - 8640; Plants - 17540; Viruses - 441; Other Eukaryotes - 17735 (source: NCBI BLink).  protein_id AT3G48750.1p  transcript_id AT3G48750.1  protein_id AT3G48750.1p  transcript_id AT3G48750.1  
At3g48760	chr3:018075902	0.0	W/18075902-18076012,18076444-18076626,18076744-18077040,18077140-18077373,18077479-18078084	AT3G48760.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc finger (DHHC type) family protein  note zinc finger (DHHC type) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: zinc finger (DHHC type) family protein (TAIR:AT3G26935.1); Has 3966 Blast hits to 3956 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 1949; Fungi - 525; Plants - 408; Viruses - 0; Other Eukaryotes - 1084 (source: NCBI BLink).  protein_id AT3G48760.1p  transcript_id AT3G48760.1  protein_id AT3G48760.1p  transcript_id AT3G48760.1  
At3g48770	chr3:018086428	0.0	C/18086428-18086817,18086133-18086279,18084790-18084987,18084107-18084317,18079261-18084014	AT3G48770.1  CDS  go_component chloroplast|GO:0009507||IEA  go_function DNA binding|GO:0003677||IEA  go_function ATP binding|GO:0005524||IEA  go_process biological_process|GO:0008150||ND  product ATP binding / DNA binding  note ATP binding / DNA binding; FUNCTIONS IN: DNA binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, BED-type predicted (InterPro:IPR003656), ATP-binding region, ATPase-like (InterPro:IPR003594), Protein of unknown function DUF1544 (InterPro:IPR011523); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28020.1); Has 467 Blast hits to 403 proteins in 110 species: Archae - 4; Bacteria - 103; Metazoa - 114; Fungi - 38; Plants - 137; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT3G48770.1p  transcript_id AT3G48770.1  protein_id AT3G48770.1p  transcript_id AT3G48770.1  
At3g48780	chr3:018089346	0.0	W/18089346-18089471,18089573-18089638,18089724-18089812,18089977-18090122,18090205-18090329,18090420-18090513,18090606-18090769,18090922-18091083,18091393-18091519,18091610-18091776,18091873-18091980,18092181-18092276	AT3G48780.1  CDS  gene_syn ATSPT1, SERINE PALMITOYLTRANSFERASE 1, SPT1  gene SPT1  function Encodes one of the two LCB2 subunits (LCB2a and LCB2b) of serine palmitoyltransferase, an enzyme involved in sphingolipid biosynthesis. LCB2a and LCB2b are functional redundant. Double mutants are gametophytic lethal.  go_component endomembrane system|GO:0012505||IEA  go_process pollen development|GO:0009555|18208516|IMP  go_process photomorphogenesis|GO:0009640|18208516|IMP  go_process sphingolipid biosynthetic process|GO:0030148|18208516|IMP  go_process sphingolipid biosynthetic process|GO:0030148||ISS  go_function serine C-palmitoyltransferase activity|GO:0004758|18208516|IGI  go_function serine C-palmitoyltransferase activity|GO:0004758||ISS  product SPT1 (SERINE PALMITOYLTRANSFERASE 1); serine C-palmitoyltransferase  note SERINE PALMITOYLTRANSFERASE 1 (SPT1); FUNCTIONS IN: serine C-palmitoyltransferase activity; INVOLVED IN: photomorphogenesis, pollen development, sphingolipid biosynthetic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase, class-II, pyridoxal-phosphate binding site (InterPro:IPR001917), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: LCB2; protein binding / serine C-palmitoyltransferase (TAIR:AT5G23670.2); Has 6676 Blast hits to 6657 proteins in 1230 species: Archae - 45; Bacteria - 3755; Metazoa - 626; Fungi - 393; Plants - 138; Viruses - 6; Other Eukaryotes - 1713 (source: NCBI BLink).  protein_id AT3G48780.1p  transcript_id AT3G48780.1  protein_id AT3G48780.1p  transcript_id AT3G48780.1  
At3g48790	chr3:018093404	0.0	W/18093404-18093547,18093635-18093728,18093828-18093970,18094058-18094219,18094412-18094538,18094606-18094772,18094866-18094973,18095074-18095181	AT3G48790.1  CDS  go_process metabolic process|GO:0008152||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function catalytic activity|GO:0003824||IEA  go_function transferase activity|GO:0016740||IEA  go_function transferase activity, transferring nitrogenous groups|GO:0016769||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_component cellular_component|GO:0005575||ND  go_process sphingolipid biosynthetic process|GO:0030148||ISS  go_function serine C-palmitoyltransferase activity|GO:0004758||ISS  product serine C-palmitoyltransferase, putative  note serine C-palmitoyltransferase, putative; FUNCTIONS IN: pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, serine C-palmitoyltransferase activity, transferase activity, catalytic activity; INVOLVED IN: biosynthetic process, metabolic process, sphingolipid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase, class-II, pyridoxal-phosphate binding site (InterPro:IPR001917), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: SPT1 (SERINE PALMITOYLTRANSFERASE 1); serine C-palmitoyltransferase (TAIR:AT3G48780.1); Has 6588 Blast hits to 6573 proteins in 1226 species: Archae - 47; Bacteria - 3730; Metazoa - 606; Fungi - 389; Plants - 136; Viruses - 6; Other Eukaryotes - 1674 (source: NCBI BLink).  protein_id AT3G48790.1p  transcript_id AT3G48790.1  protein_id AT3G48790.1p  transcript_id AT3G48790.1  
At3g48800	chr3:018095825	0.0	C/18095825-18096661	AT3G48800.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product sterile alpha motif (SAM) domain-containing protein  note sterile alpha motif (SAM) domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Sterile alpha motif-type (InterPro:IPR013761), Sterile alpha motif SAM (InterPro:IPR001660), Sterile alpha motif homology (InterPro:IPR010993), Sterile alpha motif homology 2 (InterPro:IPR011510); BEST Arabidopsis thaliana protein match is: sterile alpha motif (SAM) domain-containing protein (TAIR:AT5G23680.1); Has 310 Blast hits to 310 proteins in 56 species: Archae - 0; Bacteria - 11; Metazoa - 251; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G48800.1p  transcript_id AT3G48800.1  protein_id AT3G48800.1p  transcript_id AT3G48800.1  
At3g48810	chr3:018097048	0.0	W/18097048-18099027	AT3G48810.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G64320.1); Has 23279 Blast hits to 5960 proteins in 187 species: Archae - 3; Bacteria - 18; Metazoa - 695; Fungi - 579; Plants - 20944; Viruses - 0; Other Eukaryotes - 1040 (source: NCBI BLink).  protein_id AT3G48810.1p  transcript_id AT3G48810.1  protein_id AT3G48810.1p  transcript_id AT3G48810.1  
At3g48820	chr3:018102765	0.0	C/18102765-18102852,18102586-18102632,18102378-18102467,18102182-18102259,18101984-18102084,18101601-18101793,18101408-18101498,18101108-18101172,18100849-18101003,18100659-18100740,18100385-18100494,18100106-18100301	AT3G48820.2  CDS  go_process protein amino acid glycosylation|GO:0006486||IEA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component membrane|GO:0016020||ISS  go_function sialyltransferase activity|GO:0008373||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyl transferase family 29 protein / sialyltransferase family protein  note glycosyl transferase family 29 protein / sialyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, sialyltransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: Golgi apparatus, membrane; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 29 (InterPro:IPR001675); BEST Arabidopsis thaliana protein match is: glycosyl transferase family 29 protein / sialyltransferase family protein (TAIR:AT1G08660.1); Has 1842 Blast hits to 1830 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 1691; Fungi - 0; Plants - 88; Viruses - 14; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT3G48820.2p  transcript_id AT3G48820.2  protein_id AT3G48820.2p  transcript_id AT3G48820.2  
At3g48820	chr3:018102765	0.0	C/18102765-18102852,18102586-18102659,18102378-18102467,18102182-18102259,18101984-18102084,18101601-18101793,18101408-18101498,18101108-18101172,18100849-18101003,18100659-18100740,18100385-18100494,18100106-18100301	AT3G48820.1  CDS  go_process protein amino acid glycosylation|GO:0006486||IEA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component membrane|GO:0016020||ISS  go_function sialyltransferase activity|GO:0008373||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyl transferase family 29 protein / sialyltransferase family protein  note glycosyl transferase family 29 protein / sialyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, sialyltransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: Golgi apparatus, membrane; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 29 (InterPro:IPR001675); BEST Arabidopsis thaliana protein match is: glycosyl transferase family 29 protein / sialyltransferase family protein (TAIR:AT1G08660.1); Has 1842 Blast hits to 1830 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 1691; Fungi - 0; Plants - 88; Viruses - 14; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT3G48820.1p  transcript_id AT3G48820.1  protein_id AT3G48820.1p  transcript_id AT3G48820.1  
At3g48830	chr3:018103272	0.0	W/18103272-18103349,18103442-18103529,18103697-18103801,18103898-18103995,18104086-18104169,18104287-18104420,18104526-18104598,18104683-18104728,18104888-18104997,18105090-18105197,18105270-18105329,18105429-18105490,18105591-18105903,18106097-18106190,18107681-18107760,18107838-18107897,18107985-18108130,18108201-18108318,18108446-18108531,18108731-18108800,18108918-18108959,18109061-18109216,18109346-18109434,18109552-18109575,18109671-18109758,18109913-18109980,18110051-18110216	AT3G48830.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process RNA processing|GO:0006396||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_process RNA processing|GO:0006396||ISS  go_function RNA binding|GO:0003723||ISS  go_function polynucleotide adenylyltransferase activity|GO:0004652||ISS  product polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein  note polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: polynucleotide adenylyltransferase activity, RNA binding, nucleotide binding, nucleic acid binding, nucleotidyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Polynucleotide adenylyltransferase region (InterPro:IPR002646), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: polynucleotide adenylyltransferase family protein (TAIR:AT5G23690.1); Has 8005 Blast hits to 7486 proteins in 1487 species: Archae - 2; Bacteria - 3572; Metazoa - 1145; Fungi - 573; Plants - 347; Viruses - 8; Other Eukaryotes - 2358 (source: NCBI BLink).  protein_id AT3G48830.1p  transcript_id AT3G48830.1  protein_id AT3G48830.1p  transcript_id AT3G48830.1  
At3g48840	chr3:018114066	0.0	C/18114066-18114070,18113794-18113887,18113537-18113604,18113339-18113456,18113119-18113210,18112994-18113017,18112721-18112889	AT3G48840.1  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product nucleic acid binding / nucleotide binding  note nucleic acid binding / nucleotide binding; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT5G41690.1); Has 38 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G48840.1p  transcript_id AT3G48840.1  protein_id AT3G48840.1p  transcript_id AT3G48840.1  
At3g48850	chr3:018116133	0.0	C/18116133-18116420,18115440-18115845,18115141-18115355,18114906-18115030,18114759-18114816	AT3G48850.1  CDS  go_component chloroplast|GO:0009507||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_function binding|GO:0005488||ISS  product mitochondrial phosphate transporter, putative  note mitochondrial phosphate transporter, putative; FUNCTIONS IN: binding; INVOLVED IN: transport; LOCATED IN: mitochondrial inner membrane, chloroplast, membrane; EXPRESSED IN: stem, sepal, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: mitochondrial phosphate transporter (TAIR:AT5G14040.1); Has 12061 Blast hits to 8299 proteins in 335 species: Archae - 0; Bacteria - 0; Metazoa - 6218; Fungi - 3147; Plants - 1764; Viruses - 0; Other Eukaryotes - 932 (source: NCBI BLink).  protein_id AT3G48850.1p  transcript_id AT3G48850.1  protein_id AT3G48850.1p  transcript_id AT3G48850.1  
At3g48860	chr3:018117619	0.0	W/18117619-18118014,18118134-18118321,18118612-18118687,18118816-18118857,18118940-18119002,18119227-18119276,18119378-18119405,18119513-18119587,18119678-18119788,18119876-18119936,18120097-18120213,18120303-18120415,18120515-18120584,18120771-18120812,18121153-18121193,18121475-18121607,18121726-18121853	AT3G48860.2  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23700.1); Has 10525 Blast hits to 8056 proteins in 648 species: Archae - 115; Bacteria - 834; Metazoa - 5986; Fungi - 1019; Plants - 560; Viruses - 53; Other Eukaryotes - 1958 (source: NCBI BLink).  protein_id AT3G48860.2p  transcript_id AT3G48860.2  protein_id AT3G48860.2p  transcript_id AT3G48860.2  
At3g48860	chr3:018117619	0.0	W/18117619-18118014,18118134-18118321,18118612-18118687,18118816-18118857,18118940-18119002,18119227-18119276,18119378-18119405,18119513-18119587,18119678-18119788,18119876-18119936,18120097-18120213,18120303-18120415,18120515-18120584,18120771-18120865	AT3G48860.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23700.1); Has 10390 Blast hits to 7902 proteins in 643 species: Archae - 109; Bacteria - 823; Metazoa - 5940; Fungi - 1010; Plants - 540; Viruses - 53; Other Eukaryotes - 1915 (source: NCBI BLink).  protein_id AT3G48860.1p  transcript_id AT3G48860.1  protein_id AT3G48860.1p  transcript_id AT3G48860.1  
At3g48870	chr3:018125375	0.0	C/18125375-18126008,18125125-18125240,18124911-18125033,18124635-18124820,18124322-18124537,18123996-18124213,18123819-18123894,18123640-18123729,18122363-18123562	AT3G48870.1  CDS  gene_syn ATCLPC, ATHSP93-III, HSP93-III  gene HSP93-III  function Encodes a nuclear encoded protein with similarity to Clpa regulatory subunit of CLP protease complex. The protein is localized to the chloroplast stroma. May function redundantly with TIC complex in chloroplast protein import.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastid stroma|GO:0009532|14593120|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function DNA binding|GO:0003677||IEA  go_function nuclease activity|GO:0004518||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component chloroplast|GO:0009507|15659100|IDA  go_component chloroplast stroma|GO:0009570|10427773|IDA  go_component Tic complex|GO:0031897|15659100|TAS  go_process chloroplast organization|GO:0009658|15659100|ISS  go_process protein import into chloroplast stroma|GO:0045037|15659100|ISS  go_function ATP binding|GO:0005524||ISS  go_function ATPase activity|GO:0016887||ISS  product HSP93-III; ATP binding / ATPase/ DNA binding / nuclease/ nucleoside-triphosphatase/ nucleotide binding / protein binding  note HSP93-III; FUNCTIONS IN: in 7 functions; INVOLVED IN: protein import into chloroplast stroma, chloroplast organization; LOCATED IN: in 7 components; EXPRESSED IN: guard cell, leaf; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase associated with various cellular activities, AAA-2 (InterPro:IPR013093), ATPase, AAA+ type, core (InterPro:IPR003593), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), UvrB/UvrC protein (InterPro:IPR001943), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: CLPC1; ATP binding / ATP-dependent peptidase/ ATPase (TAIR:AT5G50920.1); Has 18895 Blast hits to 18018 proteins in 1827 species: Archae - 296; Bacteria - 9869; Metazoa - 469; Fungi - 538; Plants - 411; Viruses - 8; Other Eukaryotes - 7304 (source: NCBI BLink).  protein_id AT3G48870.1p  transcript_id AT3G48870.1  protein_id AT3G48870.1p  transcript_id AT3G48870.1  
At3g48880	chr3:018127873	0.0	W/18127873-18128237,18128444-18129008	AT3G48880.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G11580.1); Has 230 Blast hits to 226 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 0; Plants - 188; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G48880.1p  transcript_id AT3G48880.1  protein_id AT3G48880.1p  transcript_id AT3G48880.1  
At3g48880	chr3:018127873	0.0	W/18127873-18128237,18128444-18129008	AT3G48880.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G11580.1); Has 230 Blast hits to 226 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 0; Plants - 188; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G48880.2p  transcript_id AT3G48880.2  protein_id AT3G48880.2p  transcript_id AT3G48880.2  
At3g48890	chr3:018129669	0.0	W/18129669-18129976,18130960-18131353	AT3G48890.1  CDS  gene_syn ATMP2, Arabidopsis thaliana membrane-associated progesterone binding protein 3, AtMAPR3, MEMBRANE STEROID BINDING PROTEIN 2, MSBP2  gene ATMP2  function putative progesterone-binding protein homolog (Atmp2) mRNA,  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_function heme binding|GO:0020037||IEA  go_component nucleus|GO:0005634|18433157|IDA  product ATMP2; heme binding  note ATMP2; FUNCTIONS IN: heme binding; LOCATED IN: chloroplast thylakoid membrane, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b5, heme-binding site (InterPro:IPR018506), Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: MSBP1 (membrane steroid binding protein 1); steroid binding (TAIR:AT5G52240.1); Has 783 Blast hits to 783 proteins in 139 species: Archae - 0; Bacteria - 2; Metazoa - 377; Fungi - 218; Plants - 123; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT3G48890.1p  transcript_id AT3G48890.1  protein_id AT3G48890.1p  transcript_id AT3G48890.1  
At3g48900	chr3:018131854	0.0	W/18131854-18131921,18132011-18132168,18132382-18132443,18132545-18132672,18132813-18132864,18132941-18133013,18133109-18133182,18133551-18133610,18133732-18133894,18134010-18134109,18134437-18134519,18134622-18134722,18135082-18135218,18135696-18136239	AT3G48900.2  CDS  go_component chromatin|GO:0000785||IEA  go_component nucleus|GO:0005634||IEA  go_process DNA repair|GO:0006281||IEA  go_process chromatin assembly or disassembly|GO:0006333||IEA  go_function DNA binding|GO:0003677||IEA  go_function chromatin binding|GO:0003682||IEA  go_function catalytic activity|GO:0003824||IEA  go_function nuclease activity|GO:0004518||IEA  go_process DNA repair|GO:0006281||ISS  go_function nuclease activity|GO:0004518||ISS  product DNA binding / catalytic/ chromatin binding / nuclease  note DNA binding / catalytic/ chromatin binding / nuclease; FUNCTIONS IN: chromatin binding, DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair, chromatin assembly or disassembly; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), Chromo domain-like (InterPro:IPR016197), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), Chromo domain (InterPro:IPR000953), XPG I (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: DNA repair protein, putative (TAIR:AT1G01880.1); Has 1619 Blast hits to 1427 proteins in 251 species: Archae - 187; Bacteria - 0; Metazoa - 535; Fungi - 447; Plants - 112; Viruses - 9; Other Eukaryotes - 329 (source: NCBI BLink).  protein_id AT3G48900.2p  transcript_id AT3G48900.2  protein_id AT3G48900.2p  transcript_id AT3G48900.2  
At3g48900	chr3:018132449	0.0	W/18132449-18132672,18132813-18132864,18132941-18133013,18133109-18133182,18133551-18133610,18133732-18133894,18134010-18134109,18134437-18134519,18134622-18134722,18135082-18135218,18135696-18136239	AT3G48900.1  CDS  go_component chromatin|GO:0000785||IEA  go_component nucleus|GO:0005634||IEA  go_component endomembrane system|GO:0012505||IEA  go_process DNA repair|GO:0006281||IEA  go_process chromatin assembly or disassembly|GO:0006333||IEA  go_function DNA binding|GO:0003677||IEA  go_function chromatin binding|GO:0003682||IEA  go_function catalytic activity|GO:0003824||IEA  go_function nuclease activity|GO:0004518||IEA  go_process DNA repair|GO:0006281||ISS  go_function nuclease activity|GO:0004518||ISS  product DNA binding / catalytic/ chromatin binding / nuclease  note DNA binding / catalytic/ chromatin binding / nuclease; FUNCTIONS IN: chromatin binding, DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair, chromatin assembly or disassembly; LOCATED IN: chromatin, endomembrane system, nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), Chromo domain-like (InterPro:IPR016197), Chromo domain (InterPro:IPR000953), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG I (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: UVH3 (ULTRAVIOLET HYPERSENSITIVE 3); DNA binding / catalytic/ endonuclease/ nuclease/ single-stranded DNA binding (TAIR:AT3G28030.1); Has 1196 Blast hits to 1194 proteins in 241 species: Archae - 177; Bacteria - 0; Metazoa - 418; Fungi - 278; Plants - 81; Viruses - 9; Other Eukaryotes - 233 (source: NCBI BLink).  protein_id AT3G48900.1p  transcript_id AT3G48900.1  protein_id AT3G48900.1p  transcript_id AT3G48900.1  
At3g48920	chr3:018139392	0.0	W/18139392-18139542,18139745-18139874,18140057-18140561	AT3G48920.1  CDS  gene_syn AtMYB45, myb domain protein 45  gene AtMYB45  function Member of the R2R3 factor gene family.  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product AtMYB45 (myb domain protein 45); DNA binding / transcription factor  note myb domain protein 45 (AtMYB45); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, response to salicylic acid stimulus; EXPRESSED IN: sperm cell, sepal, hypocotyl; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: AtMYB18 (myb domain protein 18); DNA binding / transcription factor (TAIR:AT4G25560.1); Has 6348 Blast hits to 5827 proteins in 358 species: Archae - 0; Bacteria - 0; Metazoa - 668; Fungi - 286; Plants - 3737; Viruses - 3; Other Eukaryotes - 1654 (source: NCBI BLink).  protein_id AT3G48920.1p  transcript_id AT3G48920.1  protein_id AT3G48920.1p  transcript_id AT3G48920.1  
At3g48930	chr3:018142178	0.0	C/18142178-18142189,18142026-18142066,18141830-18141930,18141380-18141524,18141208-18141297,18141017-18141110	AT3G48930.1  CDS  gene_syn EMB1080, embryo defective 1080  gene EMB1080  go_component cell wall|GO:0005618|16287169|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product EMB1080 (embryo defective 1080); structural constituent of ribosome  note embryo defective 1080 (EMB1080); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: embryonic development ending in seed dormancy, translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S17 (InterPro:IPR000266); BEST Arabidopsis thaliana protein match is: RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA); structural constituent of ribosome (TAIR:AT5G23740.1); Has 956 Blast hits to 954 proteins in 334 species: Archae - 160; Bacteria - 168; Metazoa - 241; Fungi - 98; Plants - 94; Viruses - 0; Other Eukaryotes - 195 (source: NCBI BLink).  protein_id AT3G48930.1p  transcript_id AT3G48930.1  protein_id AT3G48930.1p  transcript_id AT3G48930.1  
At3g48940	chr3:018144043	0.0	C/18144043-18144163,18143735-18143776,18143385-18143472,18143176-18143257,18142863-18143057	AT3G48940.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product remorin family protein  note remorin family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal region (InterPro:IPR005516), Remorin, N-terminal region (InterPro:IPR005518); BEST Arabidopsis thaliana protein match is: remorin family protein (TAIR:AT5G23750.1); Has 1587 Blast hits to 1015 proteins in 197 species: Archae - 1; Bacteria - 219; Metazoa - 143; Fungi - 104; Plants - 300; Viruses - 0; Other Eukaryotes - 820 (source: NCBI BLink).  protein_id AT3G48940.1p  transcript_id AT3G48940.1  protein_id AT3G48940.1p  transcript_id AT3G48940.1  
At3g48950	chr3:018148017	0.0	W/18148017-18148358,18148715-18148838,18148922-18149167,18149290-18149987	AT3G48950.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT2G23900.1); Has 2362 Blast hits to 2358 proteins in 310 species: Archae - 2; Bacteria - 567; Metazoa - 8; Fungi - 842; Plants - 838; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT3G48950.1p  transcript_id AT3G48950.1  protein_id AT3G48950.1p  transcript_id AT3G48950.1  
At3g48960	chr3:018151307	0.0	C/18151307-18151412,18151023-18151156,18150766-18150924,18150444-18150665	AT3G48960.1  CDS  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L13 (RPL13C)  note 60S ribosomal protein L13 (RPL13C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, ribosome; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13e, conserved site (InterPro:IPR018256), Ribosomal protein L13e (InterPro:IPR001380); BEST Arabidopsis thaliana protein match is: ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1); structural constituent of ribosome (TAIR:AT3G49010.3); Has 542 Blast hits to 542 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 223; Fungi - 113; Plants - 98; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT3G48960.1p  transcript_id AT3G48960.1  protein_id AT3G48960.1p  transcript_id AT3G48960.1  
At3g48970	chr3:018153291	0.0	C/18153291-18153296,18153092-18153173,18152408-18152742	AT3G48970.1  CDS  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_process copper ion transport|GO:0006825||ISS  go_function copper ion binding|GO:0005507||ISS  product copper-binding family protein  note copper-binding family protein; FUNCTIONS IN: copper ion binding, metal ion binding; INVOLVED IN: copper ion transport, metal ion transport; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: metal ion binding (TAIR:AT3G56891.1); Has 532 Blast hits to 513 proteins in 44 species: Archae - 0; Bacteria - 31; Metazoa - 0; Fungi - 0; Plants - 498; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G48970.1p  transcript_id AT3G48970.1  protein_id AT3G48970.1p  transcript_id AT3G48970.1  
At3g48980	chr3:018155416	0.0	W/18155416-18155595,18155864-18156468,18156663-18156855,18157263-18157327,18157403-18157613,18157857-18158222	AT3G48980.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro:IPR008539); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23850.1); Has 462 Blast hits to 458 proteins in 90 species: Archae - 0; Bacteria - 36; Metazoa - 203; Fungi - 74; Plants - 116; Viruses - 2; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT3G48980.1p  transcript_id AT3G48980.1  protein_id AT3G48980.1p  transcript_id AT3G48980.1  
At3g48990	chr3:018161091	0.0	C/18161091-18161294,18160220-18160897,18159731-18160100,18159378-18159481,18159031-18159219	AT3G48990.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function catalytic activity|GO:0003824||IEA  go_function AMP binding|GO:0016208||ISS  product AMP-dependent synthetase and ligase family protein  note AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: catalytic activity, AMP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: apoplast, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: 4-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putative (TAIR:AT4G05160.1); Has 56117 Blast hits to 51778 proteins in 2278 species: Archae - 561; Bacteria - 29860; Metazoa - 2967; Fungi - 3087; Plants - 1292; Viruses - 1; Other Eukaryotes - 18349 (source: NCBI BLink).  protein_id AT3G48990.1p  transcript_id AT3G48990.1  protein_id AT3G48990.1p  transcript_id AT3G48990.1  
At3g49000	chr3:018162903	0.0	W/18162903-18162974,18163049-18163202,18163295-18163407,18163513-18163585,18163751-18163902,18164045-18164185,18164288-18164380,18164505-18164616,18164775-18164933,18165012-18165049,18165120-18165212,18165298-18165381,18165475-18165627,18165712-18165846	AT3G49000.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process transcription|GO:0006350||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product RNA polymerase III subunit RPC82 family protein  note RNA polymerase III subunit RPC82 family protein; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase III subunit RPC82-related, helix-turn-helix (InterPro:IPR013197), RNA polymerase III Rpc82, C -terminal (InterPro:IPR008806); Has 175 Blast hits to 170 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 89; Fungi - 45; Plants - 23; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT3G49000.1p  transcript_id AT3G49000.1  protein_id AT3G49000.1p  transcript_id AT3G49000.1  
At3g49010	chr3:018167942	0.0	C/18167942-18168047,18167710-18167843,18166971-18167192	AT3G49010.5  CDS  gene_syn 40S RIBOSOMAL PROTEIN, ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1, ATBBC1, BBC1, BREAST BASIC CONSERVED 1, RSU2  gene ATBBC1  function Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1).  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component ribosome|GO:0005840||ISS  go_component ribosome|GO:0005840||TAS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||ISS  go_process translation|GO:0006412||TAS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735|7557437|ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1); structural constituent of ribosome  note ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1 (ATBBC1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13e (InterPro:IPR001380); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L13 (RPL13D) (TAIR:AT5G23900.1); Has 543 Blast hits to 539 proteins in 205 species: Archae - 0; Bacteria - 0; Metazoa - 225; Fungi - 113; Plants - 98; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT3G49010.5p  transcript_id AT3G49010.5  protein_id AT3G49010.5p  transcript_id AT3G49010.5  
At3g49010	chr3:018167942	0.0	C/18167942-18168047,18167710-18167843,18167291-18167449,18166971-18167192	AT3G49010.1  CDS  gene_syn 40S RIBOSOMAL PROTEIN, ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1, ATBBC1, BBC1, BREAST BASIC CONSERVED 1, RSU2  gene ATBBC1  function Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1).  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component ribosome|GO:0005840||ISS  go_component ribosome|GO:0005840||TAS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process translation|GO:0006412||TAS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735|7557437|ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1); structural constituent of ribosome  note ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1 (ATBBC1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13e, conserved site (InterPro:IPR018256), Ribosomal protein L13e (InterPro:IPR001380); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L13 (RPL13D) (TAIR:AT5G23900.1); Has 546 Blast hits to 546 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 227; Fungi - 113; Plants - 98; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT3G49010.1p  transcript_id AT3G49010.1  protein_id AT3G49010.1p  transcript_id AT3G49010.1  
At3g49010	chr3:018167942	0.0	C/18167942-18168047,18167710-18167843,18167291-18167449,18166971-18167192	AT3G49010.2  CDS  gene_syn 40S RIBOSOMAL PROTEIN, ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1, ATBBC1, BBC1, BREAST BASIC CONSERVED 1, RSU2  gene ATBBC1  function Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1).  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component ribosome|GO:0005840||ISS  go_component ribosome|GO:0005840||TAS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process translation|GO:0006412||TAS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735|7557437|ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1); structural constituent of ribosome  note ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1 (ATBBC1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 8 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13e, conserved site (InterPro:IPR018256), Ribosomal protein L13e (InterPro:IPR001380); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L13 (RPL13D) (TAIR:AT5G23900.1); Has 546 Blast hits to 546 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 227; Fungi - 113; Plants - 98; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT3G49010.2p  transcript_id AT3G49010.2  protein_id AT3G49010.2p  transcript_id AT3G49010.2  
At3g49010	chr3:018167942	0.0	C/18167942-18168047,18167710-18167843,18167291-18167449,18166971-18167192	AT3G49010.3  CDS  gene_syn 40S RIBOSOMAL PROTEIN, ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1, ATBBC1, BBC1, BREAST BASIC CONSERVED 1, RSU2  gene ATBBC1  function Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1).  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component ribosome|GO:0005840||ISS  go_component ribosome|GO:0005840||TAS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process translation|GO:0006412||TAS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735|7557437|ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1); structural constituent of ribosome  note ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1 (ATBBC1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 8 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13e, conserved site (InterPro:IPR018256), Ribosomal protein L13e (InterPro:IPR001380); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L13 (RPL13D) (TAIR:AT5G23900.1); Has 546 Blast hits to 546 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 227; Fungi - 113; Plants - 98; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT3G49010.3p  transcript_id AT3G49010.3  protein_id AT3G49010.3p  transcript_id AT3G49010.3  
At3g49010	chr3:018167942	0.0	C/18167942-18168047,18167710-18167843,18167297-18167449,18166971-18167192	AT3G49010.4  CDS  gene_syn 40S RIBOSOMAL PROTEIN, ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1, ATBBC1, BBC1, BREAST BASIC CONSERVED 1, RSU2  gene ATBBC1  function Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1).  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component ribosome|GO:0005840||ISS  go_component ribosome|GO:0005840||TAS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||ISS  go_process translation|GO:0006412||TAS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735|7557437|ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1); structural constituent of ribosome  note ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1 (ATBBC1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13e, conserved site (InterPro:IPR018256), Ribosomal protein L13e (InterPro:IPR001380); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L13 (RPL13D) (TAIR:AT5G23900.1); Has 546 Blast hits to 546 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 227; Fungi - 113; Plants - 98; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT3G49010.4p  transcript_id AT3G49010.4  protein_id AT3G49010.4p  transcript_id AT3G49010.4  
At3g49020	chr3:018169079	0.0	W/18169079-18169092,18169168-18170050,18170131-18170265,18170349-18170660	AT3G49020.1  CDS  go_component nucleus|GO:0005634|14617066|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G04230.1); Has 1258 Blast hits to 1229 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1257; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G49020.1p  transcript_id AT3G49020.1  protein_id AT3G49020.1p  transcript_id AT3G49020.1  
At3g49030	chr3:018173138	0.0	W/18173138-18173151,18173258-18174143,18174238-18174372,18174473-18174769	AT3G49030.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G04230.1); Has 1494 Blast hits to 1461 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1494; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G49030.1p  transcript_id AT3G49030.1  protein_id AT3G49030.1p  transcript_id AT3G49030.1  
At3g49040	chr3:018177676	0.0	W/18177676-18177689,18177846-18178701,18178861-18178926,18179028-18179339	AT3G49040.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G49020.1); Has 1087 Blast hits to 1061 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1087; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G49040.1p  transcript_id AT3G49040.1  protein_id AT3G49040.1p  transcript_id AT3G49040.1  
At3g49050	chr3:018181498	0.0	W/18181498-18182205,18182287-18182345,18182662-18182790,18182995-18183130,18183212-18183613	AT3G49050.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_process lipid catabolic process|GO:0016042||IEA  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function calmodulin binding|GO:0005516||ISS  product lipase class 3 family protein / calmodulin-binding heat-shock protein, putative  note lipase class 3 family protein / calmodulin-binding heat-shock protein, putative; FUNCTIONS IN: triacylglycerol lipase activity, calmodulin binding; INVOLVED IN: lipid catabolic process, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921), Mono- and diacylglycerol lipase, N-terminal (InterPro:IPR005592); BEST Arabidopsis thaliana protein match is: lipase class 3 family protein / calmodulin-binding heat-shock protein-related (TAIR:AT4G00500.2); Has 391 Blast hits to 390 proteins in 95 species: Archae - 0; Bacteria - 3; Metazoa - 133; Fungi - 62; Plants - 124; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT3G49050.1p  transcript_id AT3G49050.1  protein_id AT3G49050.1p  transcript_id AT3G49050.1  
At3g49051	chr3:018184291	0.0	C/18184291-18184431	AT3G49051.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G49051.1p  transcript_id AT3G49051.1  protein_id AT3G49051.1p  transcript_id AT3G49051.1  
At3g49055	chr3:018186180	0.0	C/18186180-18186968,18186010-18186086,18185822-18185933,18185605-18185721,18185166-18185513	AT3G49055.1  CDS  product unknown protein  note unknown protein; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24560.1); Has 42257 Blast hits to 22827 proteins in 1235 species: Archae - 554; Bacteria - 3576; Metazoa - 23751; Fungi - 2674; Plants - 1649; Viruses - 136; Other Eukaryotes - 9917 (source: NCBI BLink).  protein_id AT3G49055.1p  transcript_id AT3G49055.1  protein_id AT3G49055.1p  transcript_id AT3G49055.1  
At3g49060	chr3:018191704	0.0	C/18191704-18191878,18191064-18191185,18190652-18190773,18190459-18190563,18190074-18190219,18189803-18189966,18189349-18189495,18188473-18189000,18187650-18188375,18187386-18187568	AT3G49060.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein / U-box domain-containing protein  note protein kinase family protein / U-box domain-containing protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), U box (InterPro:IPR003613), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein / U-box domain-containing protein (TAIR:AT2G45910.1); Has 59614 Blast hits to 59090 proteins in 2745 species: Archae - 31; Bacteria - 4081; Metazoa - 26762; Fungi - 3416; Plants - 16307; Viruses - 190; Other Eukaryotes - 8827 (source: NCBI BLink).  protein_id AT3G49060.1p  transcript_id AT3G49060.1  protein_id AT3G49060.1p  transcript_id AT3G49060.1  
At3g49070	chr3:018192479	0.0	C/18192479-18193729	AT3G49070.1  CDS  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  product unknown protein  note unknown protein; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19250.1); Has 88 Blast hits to 88 proteins in 9 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G49070.1p  transcript_id AT3G49070.1  protein_id AT3G49070.1p  transcript_id AT3G49070.1  
At3g49080	chr3:018195979	0.0	C/18195979-18196657,18195061-18195501,18194773-18194853,18194500-18194591	AT3G49080.1  CDS  gene_syn AT3G49090  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component cytosolic small ribosomal subunit|GO:0022627||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein S9 family protein  note ribosomal protein S9 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S9 (InterPro:IPR000754), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721); BEST Arabidopsis thaliana protein match is: RPS9 (RIBOSOMAL PROTEIN S9); structural constituent of ribosome (TAIR:AT1G74970.1); Has 5624 Blast hits to 5609 proteins in 1600 species: Archae - 138; Bacteria - 2917; Metazoa - 148; Fungi - 89; Plants - 121; Viruses - 18; Other Eukaryotes - 2193 (source: NCBI BLink).  protein_id AT3G49080.1p  transcript_id AT3G49080.1  protein_id AT3G49080.1p  transcript_id AT3G49080.1  
At3g49100	chr3:018196944	0.0	W/18196944-18197015,18197207-18197275,18197822-18197915,18198222-18198298	AT3G49100.1  CDS  go_component signal recognition particle|GO:0048500||IEA  go_process SRP-dependent cotranslational protein targeting to membrane|GO:0006614||IEA  go_process negative regulation of translational elongation|GO:0045900||IEA  go_function protein binding|GO:0005515||IEA  go_function 7S RNA binding|GO:0008312||IEA  go_function signal recognition particle binding|GO:0005047||ISS  product signal recognition particle 9 kDa protein, putative / SRP9, putative  note signal recognition particle 9 kDa protein, putative / SRP9, putative; FUNCTIONS IN: protein binding, 7S RNA binding, signal recognition particle binding; INVOLVED IN: negative regulation of translational elongation, SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: signal recognition particle; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Signal recognition particle, SRP9 subunit (InterPro:IPR008832), Signal recognition particle, SRP9/SRP14 subunit (InterPro:IPR009018); Has 176 Blast hits to 176 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 10; Plants - 27; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT3G49100.1p  transcript_id AT3G49100.1  protein_id AT3G49100.1p  transcript_id AT3G49100.1  
At3g49110	chr3:018200713	0.0	W/18200713-18200946,18201507-18201698,18202163-18202331,18202422-18202891	AT3G49110.1  CDS  gene_syn ATPCA, ATPRX33, F2K15.4, PEROXIDASE 33, PEROXIDASE CA, PRX33, PRXCA  gene PRXCA  function Class III peroxidase Perx33. Expressed in roots. Located in the cell wall. Involved in cell elongation. Expression activated by light. May play a role in generating H2O2 during defense response.  go_component vacuole|GO:0005773|15539469|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component plant-type cell wall|GO:0009505|16284776|IDA  go_process oxygen and reactive oxygen species metabolic process|GO:0006800|16889645|IMP  go_process response to light stimulus|GO:0009416|16284776|IEP  go_process unidimensional cell growth|GO:0009826|16284776|IMP  go_process defense response to bacterium|GO:0042742|16889645|IMP  go_process defense response to fungus|GO:0050832|16889645|IMP  go_function peroxidase activity|GO:0004601|16889645|IMP  go_function peroxidase activity|GO:0004601||ISS  product PRXCA (PEROXIDASE CA); peroxidase  note PEROXIDASE CA (PRXCA); FUNCTIONS IN: peroxidase activity; INVOLVED IN: oxygen and reactive oxygen species metabolic process, defense response to fungus, defense response to bacterium, response to light stimulus, unidimensional cell growth; LOCATED IN: vacuole, plant-type cell wall; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: PRXCB (PEROXIDASE CB); peroxidase (TAIR:AT3G49120.1); Has 2802 Blast hits to 2789 proteins in 180 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 25; Plants - 2745; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT3G49110.1p  transcript_id AT3G49110.1  protein_id AT3G49110.1p  transcript_id AT3G49110.1  
At3g49115	chr3:018205775	0.0	W/18205775-18205975	AT3G49115.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G49115.1p  transcript_id AT3G49115.1  protein_id AT3G49115.1p  transcript_id AT3G49115.1  
At3g49120	chr3:018207819	0.0	W/18207819-18208049,18208803-18208994,18209312-18209480,18209572-18210041	AT3G49120.1  CDS  gene_syn ARABIDOPSIS THALIANA PEROXIDASE CB, ATPCB, ATPERX34, F2K15.3, PEROXIDASE 34, PEROXIDASE CB, PERX34, PRXCB  gene PRXCB  function Class III peroxidase Perx34. Expressed in roots, leaves and stems. Located in the cell wall. Involved in cell elongation. Expression activated by light. May play a role in generating H2O2 during defense response.  go_component cell wall|GO:0005618|14595688|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_component plant-type cell wall|GO:0009505|16284776|IDA  go_process oxygen and reactive oxygen species metabolic process|GO:0006800|16889645|IMP  go_process response to light stimulus|GO:0009416|16284776|IEP  go_process unidimensional cell growth|GO:0009826|16284776|IMP  go_process defense response to bacterium|GO:0042742|16889645|IMP  go_process defense response to fungus|GO:0050832|16889645|IMP  go_function peroxidase activity|GO:0004601|16889645|IMP  go_function peroxidase activity|GO:0004601||ISS  product PRXCB (PEROXIDASE CB); peroxidase  note PEROXIDASE CB (PRXCB); FUNCTIONS IN: peroxidase activity; INVOLVED IN: oxygen and reactive oxygen species metabolic process, defense response to fungus, defense response to bacterium, response to light stimulus, unidimensional cell growth; LOCATED IN: apoplast, cell wall, plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: stem, guard cell, root, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: PRXCA (PEROXIDASE CA); peroxidase (TAIR:AT3G49110.1); Has 2771 Blast hits to 2757 proteins in 165 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 2729; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT3G49120.1p  transcript_id AT3G49120.1  protein_id AT3G49120.1p  transcript_id AT3G49120.1  
At3g49130	chr3:018210453	0.0	W/18210453-18210486,18210560-18210673,18210736-18211260,18211318-18211443,18211584-18211708	AT3G49130.1  CDS  gene_syn F2K15.1  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  product RNA binding  note RNA binding; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061); BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (TAIR:AT5G06520.1); Has 146 Blast hits to 131 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 59; Fungi - 4; Plants - 54; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT3G49130.1p  transcript_id AT3G49130.1  protein_id AT3G49130.1p  transcript_id AT3G49130.1  
At3g49140	chr3:018215802	0.0	C/18215802-18217848,18215494-18215613,18215289-18215385,18214743-18214962,18214282-18214384,18214121-18214188,18213981-18214016	AT3G49140.2  CDS  gene_syn F2K15.2  product unknown protein  note EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: EMB2758 (embryo defective 2758) (TAIR:AT4G33990.1).  protein_id AT3G49140.2p  transcript_id AT3G49140.2  protein_id AT3G49140.2p  transcript_id AT3G49140.2  
At3g49140	chr3:018215802	0.0	C/18215802-18217848,18215494-18215613,18215289-18215385,18214743-18214962,18214282-18214384,18214121-18214188,18213992-18214016,18213696-18213856,18213424-18213588,18212981-18213286,18212598-18212750,18212394-18212489,18212187-18212273	AT3G49140.1  CDS  gene_syn F2K15.2  product unknown protein  note EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: EMB2758 (embryo defective 2758) (TAIR:AT4G33990.1); Has 45368 Blast hits to 16108 proteins in 635 species: Archae - 60; Bacteria - 10333; Metazoa - 8211; Fungi - 3499; Plants - 14806; Viruses - 492; Other Eukaryotes - 7967 (source: NCBI BLink).  protein_id AT3G49140.1p  transcript_id AT3G49140.1  protein_id AT3G49140.1p  transcript_id AT3G49140.1  
At3g49150	chr3:018218858	0.0	W/18218858-18219799,18219885-18220025,18220116-18220381,18221186-18221605,18221754-18221877	AT3G49150.1  CDS  go_component integral to membrane|GO:0016021||IEA  go_process protein insertion into membrane|GO:0051205||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein insertion into membrane; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), 60 kDa inner membrane insertion protein (InterPro:IPR001708), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G59240.1); Has 1228 Blast hits to 1197 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 2; Plants - 1199; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G49150.1p  transcript_id AT3G49150.1  protein_id AT3G49150.1p  transcript_id AT3G49150.1  
At3g49160	chr3:018224006	0.0	C/18224006-18224415,18222329-18223933,18222132-18222249	AT3G49160.1  CDS  function Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.  go_process glycolysis|GO:0006096||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function catalytic activity|GO:0003824||IEA  go_function pyruvate kinase activity|GO:0004743||IEA  go_function potassium ion binding|GO:0030955||IEA  go_component cellular_component|GO:0005575||ND  go_process glycolysis|GO:0006096||ISS  go_function pyruvate kinase activity|GO:0004743||ISS  product pyruvate kinase family protein  note pyruvate kinase family protein; FUNCTIONS IN: pyruvate kinase activity, magnesium ion binding, potassium ion binding, catalytic activity; INVOLVED IN: glycolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), Pyruvate kinase (InterPro:IPR001697), Pyruvate kinase, barrel (InterPro:IPR015793); BEST Arabidopsis thaliana protein match is: pyruvate kinase, putative (TAIR:AT5G63680.1); Has 9334 Blast hits to 6190 proteins in 1498 species: Archae - 156; Bacteria - 5277; Metazoa - 728; Fungi - 277; Plants - 371; Viruses - 0; Other Eukaryotes - 2525 (source: NCBI BLink).  protein_id AT3G49160.1p  transcript_id AT3G49160.1  protein_id AT3G49160.1p  transcript_id AT3G49160.1  
At3g49162	chr3:018225379	0.0	C/18225379-18226805	AT3G49162.1  pseudogenic_transcript  pseudo  function pseudogene of glycoside hydrolase family 28 protein  
At3g49170	chr3:018227530	0.0	C/18227530-18229600,18226954-18227435	AT3G49170.1  CDS  gene_syn EMB2261, embryo defective 2261  gene EMB2261  go_component chloroplast|GO:0009507||IEA  go_process embryonic development ending in seed dormancy|GO:0009793|15647901|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product EMB2261 (embryo defective 2261)  note embryo defective 2261 (EMB2261); INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G57430.1); Has 18066 Blast hits to 5364 proteins in 182 species: Archae - 0; Bacteria - 10; Metazoa - 201; Fungi - 92; Plants - 17317; Viruses - 0; Other Eukaryotes - 446 (source: NCBI BLink).  protein_id AT3G49170.1p  transcript_id AT3G49170.1  protein_id AT3G49170.1p  transcript_id AT3G49170.1  
At3g49180	chr3:018229810	0.0	W/18229810-18230013,18230091-18230338,18230423-18230570,18230727-18230914,18231159-18231286,18231387-18231637,18231725-18231874	AT3G49180.1  CDS  gene_syn RID3, ROOT INITIATION DEFECTIVE 3  gene RID3  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product RID3 (ROOT INITIATION DEFECTIVE 3); nucleotide binding  note ROOT INITIATION DEFECTIVE 3 (RID3); FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: RACK1B_AT (RECEPTOR FOR ACTIVATED C KINASE 1 B); nucleotide binding (TAIR:AT1G48630.1); Has 31679 Blast hits to 16014 proteins in 539 species: Archae - 34; Bacteria - 5028; Metazoa - 13259; Fungi - 6114; Plants - 2509; Viruses - 0; Other Eukaryotes - 4735 (source: NCBI BLink).  protein_id AT3G49180.1p  transcript_id AT3G49180.1  protein_id AT3G49180.1p  transcript_id AT3G49180.1  
At3g49190	chr3:018234170	0.0	C/18234170-18234376,18233397-18234002,18233230-18233296,18233024-18233124,18232722-18232931,18232365-18232502,18231988-18232227	AT3G49190.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product condensation domain-containing protein  note condensation domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1298 (InterPro:IPR009721), Uncharacterised protein family UPF0089 (InterPro:IPR004255); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49200.1); Has 751 Blast hits to 745 proteins in 114 species: Archae - 2; Bacteria - 611; Metazoa - 3; Fungi - 2; Plants - 110; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT3G49190.1p  transcript_id AT3G49190.1  protein_id AT3G49190.1p  transcript_id AT3G49190.1  
At3g49200	chr3:018237416	0.0	C/18237416-18237646,18236633-18237250,18236432-18236498,18236250-18236350,18235947-18236156,18235689-18235826,18235445-18235603	AT3G49200.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1298 (InterPro:IPR009721), Uncharacterised protein family UPF0089 (InterPro:IPR004255); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49210.1); Has 629 Blast hits to 624 proteins in 93 species: Archae - 2; Bacteria - 499; Metazoa - 5; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT3G49200.1p  transcript_id AT3G49200.1  protein_id AT3G49200.1p  transcript_id AT3G49200.1  
At3g49210	chr3:018240931	0.0	C/18240931-18241161,18239406-18240029,18239214-18239280,18239016-18239137,18238710-18238919,18238464-18238601,18238216-18238380	AT3G49210.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1298 (InterPro:IPR009721), Uncharacterised protein family UPF0089 (InterPro:IPR004255); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49200.1); Has 551 Blast hits to 544 proteins in 87 species: Archae - 2; Bacteria - 422; Metazoa - 5; Fungi - 0; Plants - 111; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT3G49210.1p  transcript_id AT3G49210.1  protein_id AT3G49210.1p  transcript_id AT3G49210.1  
At3g49220	chr3:018249840	0.0	W/18249840-18250801,18250955-18251091,18252950-18253647	AT3G49220.1  CDS  go_component cell wall|GO:0005618||IEA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase inhibitor (InterPro:IPR006501), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: PMEPCRF (PECTIN METHYLESTERASE PCR FRAGMENT F); pectinesterase (TAIR:AT5G53370.1); Has 1605 Blast hits to 1561 proteins in 271 species: Archae - 0; Bacteria - 403; Metazoa - 1; Fungi - 128; Plants - 1073; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G49220.1p  transcript_id AT3G49220.1  protein_id AT3G49220.1p  transcript_id AT3G49220.1  
At3g49230	chr3:018254405	0.0	W/18254405-18254532,18254850-18254907	AT3G49230.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G49230.1p  transcript_id AT3G49230.1  protein_id AT3G49230.1p  transcript_id AT3G49230.1  
At3g49240	chr3:018256086	0.0	W/18256086-18257975	AT3G49240.1  CDS  gene_syn emb1796, embryo defective 1796  gene emb1796  go_component mitochondrion|GO:0005739|17137349|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_function ATP binding|GO:0005524|17137349|IDA  go_process embryonic development ending in seed dormancy|GO:0009793|15647901|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product emb1796 (embryo defective 1796); ATP binding  note embryo defective 1796 (emb1796); FUNCTIONS IN: ATP binding; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: GRP23 (GLUTAMINE-RICH PROTEIN23); binding (TAIR:AT1G10270.1); Has 15556 Blast hits to 5876 proteins in 216 species: Archae - 25; Bacteria - 95; Metazoa - 311; Fungi - 220; Plants - 14033; Viruses - 0; Other Eukaryotes - 872 (source: NCBI BLink).  protein_id AT3G49240.1p  transcript_id AT3G49240.1  protein_id AT3G49240.1p  transcript_id AT3G49240.1  
At3g49250	chr3:018260783	0.0	C/18260783-18260803,18260220-18260475,18259902-18260133,18259574-18259765,18259154-18259474,18258824-18259043,18258613-18258633	AT3G49250.1  CDS  gene_syn DEFECTIVE IN MERISTEM SILENCING 3, DMS3  gene DMS3  function Similar to hinge-domain region of structural maintenance of chromosomes (SMC)proteins.Putative chromosome architecture protein that can potentialy link nucleic acids in facilitating an RNA1-mediated epigenetic modification involving secondary siRNA and spreading of DNA methylation.  go_component cellular_component|GO:0005575||ND  go_process DNA methylation|GO:0006306|18425128|IMP  go_process gene silencing by RNA|GO:0031047|18425128|IMP  go_function molecular_function|GO:0003674||ND  product DMS3 (DEFECTIVE IN MERISTEM SILENCING 3)  note DEFECTIVE IN MERISTEM SILENCING 3 (DMS3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA methylation, gene silencing by RNA; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24280.1); Has 47 Blast hits to 46 proteins in 11 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G49250.1p  transcript_id AT3G49250.1  protein_id AT3G49250.1p  transcript_id AT3G49250.1  
At3g49260	chr3:018262755	0.0	W/18262755-18262832,18263887-18264210,18264558-18264780,18264867-18264952,18265039-18265104,18265221-18265859	AT3G49260.1  CDS  gene_syn IQ-domain 21, iqd21  gene iqd21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product iqd21 (IQ-domain 21); calmodulin binding  note IQ-domain 21 (iqd21); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQD5 (IQ-domain 5); calmodulin binding (TAIR:AT3G22190.1); Has 512 Blast hits to 509 proteins in 49 species: Archae - 0; Bacteria - 2; Metazoa - 73; Fungi - 5; Plants - 419; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT3G49260.1p  transcript_id AT3G49260.1  protein_id AT3G49260.1p  transcript_id AT3G49260.1  
At3g49260	chr3:018262755	0.0	W/18262755-18262832,18263887-18264210,18264558-18264780,18264867-18264952,18265039-18265104,18265221-18265859	AT3G49260.2  CDS  gene_syn IQ-domain 21, iqd21  gene iqd21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product iqd21 (IQ-domain 21); calmodulin binding  note IQ-domain 21 (iqd21); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQD5 (IQ-domain 5); calmodulin binding (TAIR:AT3G22190.1); Has 512 Blast hits to 509 proteins in 49 species: Archae - 0; Bacteria - 2; Metazoa - 73; Fungi - 5; Plants - 419; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT3G49260.2p  transcript_id AT3G49260.2  protein_id AT3G49260.2p  transcript_id AT3G49260.2  
At3g49270	chr3:018268164	0.0	C/18268164-18268230,18267968-18268026,18267493-18267813	AT3G49270.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49305.1); Has 50 Blast hits to 32 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 24; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G49270.1p  transcript_id AT3G49270.1  protein_id AT3G49270.1p  transcript_id AT3G49270.1  
At3g49270	chr3:018268164	0.0	C/18268164-18268230,18267968-18268026,18267493-18267813	AT3G49270.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49305.1); Has 50 Blast hits to 32 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 24; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G49270.2p  transcript_id AT3G49270.2  protein_id AT3G49270.2p  transcript_id AT3G49270.2  
At3g49270	chr3:018268164	0.0	C/18268164-18268230,18267968-18268026,18267498-18267813,18267400-18267416	AT3G49270.3  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49305.1); Has 48 Blast hits to 33 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G49270.3p  transcript_id AT3G49270.3  protein_id AT3G49270.3p  transcript_id AT3G49270.3  
At3g49280	chr3:018270025	0.0	W/18270025-18270934	AT3G49280.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G13655.1); similar to hypothetical protein 23.t00046 [Brassica oleracea] (GB:ABD65629.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446)  
At3g49290	chr3:018273407	0.0	W/18273407-18273484,18273750-18273832,18273923-18274073,18274186-18274285,18274354-18274446,18274531-18274573,18274663-18274754,18274831-18274955,18275048-18275221	AT3G49290.1  CDS  gene_syn ABIL2, ABL INTERACTOR-LIKE PROTEIN 2  gene ABIL2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ABIL2 (ABL INTERACTOR-LIKE PROTEIN 2)  note ABL INTERACTOR-LIKE PROTEIN 2 (ABIL2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3) (TAIR:AT5G24310.1); Has 186 Blast hits to 177 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 17; Plants - 105; Viruses - 3; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT3G49290.1p  transcript_id AT3G49290.1  protein_id AT3G49290.1p  transcript_id AT3G49290.1  
At3g49290	chr3:018273407	0.0	W/18273407-18273484,18273750-18273832,18273923-18274073,18274186-18274285,18274354-18274446,18274531-18274573,18274663-18274754,18274831-18274955,18275048-18275221	AT3G49290.2  CDS  gene_syn ABIL2, ABL INTERACTOR-LIKE PROTEIN 2  gene ABIL2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ABIL2 (ABL INTERACTOR-LIKE PROTEIN 2)  note ABL INTERACTOR-LIKE PROTEIN 2 (ABIL2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3) (TAIR:AT5G24310.1); Has 186 Blast hits to 177 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 17; Plants - 105; Viruses - 3; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT3G49290.2p  transcript_id AT3G49290.2  protein_id AT3G49290.2p  transcript_id AT3G49290.2  
At3g49300	chr3:018277524	0.0	C/18277524-18277590,18277321-18277373,18276968-18277108	AT3G49300.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product proline-rich family protein  note proline-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49305.1); Has 1287 Blast hits to 453 proteins in 103 species: Archae - 0; Bacteria - 44; Metazoa - 426; Fungi - 53; Plants - 605; Viruses - 23; Other Eukaryotes - 136 (source: NCBI BLink).  protein_id AT3G49300.1p  transcript_id AT3G49300.1  protein_id AT3G49300.1p  transcript_id AT3G49300.1  
At3g49305	chr3:018280319	0.0	C/18280319-18280385,18280048-18280100,18279750-18279866	AT3G49305.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G49300.1); Has 10 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G49305.1p  transcript_id AT3G49305.1  protein_id AT3G49305.1p  transcript_id AT3G49305.1  
At3g49307	chr3:018282955	0.0	C/18282955-18283009,18282602-18282654,18282324-18282446	AT3G49307.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Expressed protein  note Expressed protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 9 Blast hits to 9 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G49307.1p  transcript_id AT3G49307.1  protein_id AT3G49307.1p  transcript_id AT3G49307.1  
At3g49310	chr3:018287841	0.0	C/18287841-18287991,18287089-18287233,18286828-18286996,18286191-18286461,18285789-18286054,18285489-18285704,18285308-18285410,18285084-18285145	AT3G49310.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF791 (InterPro:IPR008509), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27720.1); Has 550 Blast hits to 545 proteins in 201 species: Archae - 5; Bacteria - 285; Metazoa - 85; Fungi - 33; Plants - 99; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT3G49310.1p  transcript_id AT3G49310.1  protein_id AT3G49310.1p  transcript_id AT3G49310.1  
At3g49320	chr3:018290420	0.0	C/18290420-18290629,18290033-18290179,18289864-18289962,18289332-18289523,18288903-18289022,18288699-18288770,18288381-18288605	AT3G49320.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Metal-dependent protein hydrolase (InterPro:IPR003226); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41970.1); Has 458 Blast hits to 456 proteins in 209 species: Archae - 0; Bacteria - 122; Metazoa - 129; Fungi - 87; Plants - 29; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).  protein_id AT3G49320.1p  transcript_id AT3G49320.1  protein_id AT3G49320.1p  transcript_id AT3G49320.1  
At3g49330	chr3:018291488	0.0	W/18291488-18292048	AT3G49330.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT5G24370.1); Has 24 Blast hits to 24 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G49330.1p  transcript_id AT3G49330.1  protein_id AT3G49330.1p  transcript_id AT3G49330.1  
At3g49340	chr3:018294133	0.0	C/18294133-18294577,18293347-18293927	AT3G49340.1  CDS  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product cysteine proteinase, putative  note cysteine proteinase, putative; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: cysteine proteinase, putative (TAIR:AT2G27420.1); Has 6149 Blast hits to 6096 proteins in 575 species: Archae - 33; Bacteria - 97; Metazoa - 2812; Fungi - 4; Plants - 1230; Viruses - 120; Other Eukaryotes - 1853 (source: NCBI BLink).  protein_id AT3G49340.1p  transcript_id AT3G49340.1  protein_id AT3G49340.1p  transcript_id AT3G49340.1  
At3g49350	chr3:018299689	0.0	C/18299689-18299846,18299324-18299459,18299178-18299227,18298985-18299038,18297663-18298884	AT3G49350.1  CDS  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of Rab GTPase activity|GO:0032313||IEA  go_function RAB GTPase activator activity|GO:0005097||IEA  product RAB GTPase activator  note RAB GTPase activator; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: RabGAP/TBC domain-containing protein (TAIR:AT5G24390.1); Has 3275 Blast hits to 2795 proteins in 165 species: Archae - 0; Bacteria - 0; Metazoa - 1978; Fungi - 539; Plants - 345; Viruses - 0; Other Eukaryotes - 413 (source: NCBI BLink).  protein_id AT3G49350.1p  transcript_id AT3G49350.1  protein_id AT3G49350.1p  transcript_id AT3G49350.1  
At3g49360	chr3:018304132	0.0	C/18304132-18304283,18303891-18304026,18303189-18303680	AT3G49360.1  CDS  go_component plasma membrane|GO:0005886|17151019|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process pentose-phosphate shunt|GO:0006098||IEA  go_function 6-phosphogluconolactonase activity|GO:0017057||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function catalytic activity|GO:0003824||ISS  product glucosamine/galactosamine-6-phosphate isomerase family protein  note glucosamine/galactosamine-6-phosphate isomerase family protein; FUNCTIONS IN: 6-phosphogluconolactonase activity, catalytic activity; INVOLVED IN: pentose-phosphate shunt, carbohydrate metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glucosamine/galactosamine-6-phosphate isomerase (InterPro:IPR006148), 6-phosphogluconolactonase (InterPro:IPR005900); BEST Arabidopsis thaliana protein match is: glucosamine/galactosamine-6-phosphate isomerase-related (TAIR:AT5G24410.1); Has 2024 Blast hits to 2023 proteins in 713 species: Archae - 0; Bacteria - 1149; Metazoa - 146; Fungi - 181; Plants - 85; Viruses - 0; Other Eukaryotes - 463 (source: NCBI BLink).  protein_id AT3G49360.1p  transcript_id AT3G49360.1  protein_id AT3G49360.1p  transcript_id AT3G49360.1  
At3g49370	chr3:018307367	0.0	C/18307367-18307906,18307135-18307265,18306907-18306948,18306674-18306782,18306510-18306588,18306107-18306403,18305916-18306025,18305619-18305723,18305453-18305515,18305182-18305349,18304954-18305094	AT3G49370.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function calcium-dependent protein serine/threonine phosphatase activity|GO:0004723||ISS  go_function calcium ion binding|GO:0005509||ISS  go_function kinase activity|GO:0016301||ISS  product calcium-dependent protein kinase, putative / CDPK, putative  note calcium-dependent protein kinase, putative / CDPK, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), EF-Hand type (InterPro:IPR011992), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase, putative / CDPK, putative (TAIR:AT5G24430.1); Has 88705 Blast hits to 87345 proteins in 2181 species: Archae - 75; Bacteria - 8289; Metazoa - 38638; Fungi - 8561; Plants - 14895; Viruses - 488; Other Eukaryotes - 17759 (source: NCBI BLink).  protein_id AT3G49370.1p  transcript_id AT3G49370.1  protein_id AT3G49370.1p  transcript_id AT3G49370.1  
At3g49380	chr3:018313347	0.0	C/18313347-18313490,18312856-18313083,18312477-18312680,18311909-18312391	AT3G49380.1  CDS  gene_syn IQ-domain 15, iqd15  gene iqd15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product iqd15 (IQ-domain 15); calmodulin binding  note IQ-domain 15 (iqd15); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: iqd17 (IQ-domain 17); calmodulin binding (TAIR:AT4G00820.1); Has 359 Blast hits to 358 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 358; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G49380.1p  transcript_id AT3G49380.1  protein_id AT3G49380.1p  transcript_id AT3G49380.1  
At3g49390	chr3:018317230	0.0	C/18317230-18317658,18316437-18316544,18316309-18316353,18316146-18316218,18315949-18316061,18315799-18315858,18315632-18315679,18315481-18315546,18315200-18315261,18314901-18314958	AT3G49390.1  CDS  gene_syn CID10  gene CID10  function RNA-binding protein, putative, RNA-binding protein RBP37, Arabidopsis thaliana, PIR:T04196.Member of a family of PAB2 domain containing proteins.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  go_function protein binding|GO:0005515|15650869|ISS  product CID10; RNA binding / protein binding  note CID10; FUNCTIONS IN: protein binding, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: RNA-binding protein, putative (TAIR:AT1G32790.1); Has 1264 Blast hits to 1124 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 624; Fungi - 149; Plants - 332; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT3G49390.1p  transcript_id AT3G49390.1  protein_id AT3G49390.1p  transcript_id AT3G49390.1  
At3g49390	chr3:018317230	0.0	C/18317230-18317658,18316437-18316544,18316309-18316353,18316146-18316218,18315949-18316061,18315799-18315858,18315632-18315679,18315481-18315546,18315200-18315261,18314901-18314958	AT3G49390.2  CDS  gene_syn CID10  gene CID10  function RNA-binding protein, putative, RNA-binding protein RBP37, Arabidopsis thaliana, PIR:T04196.Member of a family of PAB2 domain containing proteins.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  go_function protein binding|GO:0005515|15650869|ISS  product CID10; RNA binding / protein binding  note CID10; FUNCTIONS IN: protein binding, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: RNA-binding protein, putative (TAIR:AT1G32790.1); Has 1264 Blast hits to 1124 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 624; Fungi - 149; Plants - 332; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT3G49390.2p  transcript_id AT3G49390.2  protein_id AT3G49390.2p  transcript_id AT3G49390.2  
At3g49400	chr3:018324257	0.0	C/18324257-18324373,18324092-18324176,18323748-18323850,18323583-18323667,18323422-18323508,18323031-18323119,18322841-18322910,18321926-18322347,18321697-18321778,18321179-18321352,18321040-18321093,18320812-18320904,18320667-18320732,18320529-18320575,18319748-18320446,18319249-18319654	AT3G49400.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, embryo, flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); Has 724 Blast hits to 645 proteins in 140 species: Archae - 0; Bacteria - 177; Metazoa - 195; Fungi - 136; Plants - 78; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).  protein_id AT3G49400.1p  transcript_id AT3G49400.1  protein_id AT3G49400.1p  transcript_id AT3G49400.1  
At3g49410	chr3:018325015	0.0	W/18325015-18325149,18325332-18325575,18325657-18325746,18325846-18325936,18326037-18326103,18326442-18326484,18326593-18326764,18326843-18326941,18327082-18327150,18327359-18327497,18327662-18327863,18328276-18328403,18328488-18328527,18328653-18328858	AT3G49410.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24450.1); Has 2742 Blast hits to 2135 proteins in 237 species: Archae - 15; Bacteria - 209; Metazoa - 826; Fungi - 438; Plants - 163; Viruses - 84; Other Eukaryotes - 1007 (source: NCBI BLink).  protein_id AT3G49410.1p  transcript_id AT3G49410.1  protein_id AT3G49410.1p  transcript_id AT3G49410.1  
At3g49420	chr3:018329855	0.0	W/18329855-18329885,18330118-18330209,18330310-18330390,18330511-18330608,18330691-18330772,18331032-18331070	AT3G49420.1  CDS  go_process vesicle-mediated transport|GO:0016192||IEA  go_component cellular_component|GO:0005575||ND  go_process vesicle-mediated transport|GO:0016192||ISS  go_function molecular_function|GO:0003674||ND  product Got1-like family protein  note Got1-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Got1-like protein (InterPro:IPR007305); BEST Arabidopsis thaliana protein match is: Got1-like family protein (TAIR:AT5G01430.1); Has 318 Blast hits to 318 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 75; Plants - 52; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT3G49420.1p  transcript_id AT3G49420.1  protein_id AT3G49420.1p  transcript_id AT3G49420.1  
At3g49430	chr3:018332668	0.0	W/18332668-18332754,18332874-18332939,18333018-18333092,18333247-18333388,18333472-18333518,18333603-18333660,18333797-18333846,18333930-18333986,18334217-18334368,18334458-18334538,18334650-18334716,18334809-18334829	AT3G49430.1  CDS  gene_syn SRp34a, Ser/Arg-rich protein 34a  gene SRp34a  go_component nucleolus|GO:0005730|15496452|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process RNA splicing|GO:0008380|16807317|NAS  go_function RNA binding|GO:0003723||ISS  product SRp34a (Ser/Arg-rich protein 34a); RNA binding / nucleic acid binding / nucleotide binding  note Ser/Arg-rich protein 34a (SRp34a); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA splicing; LOCATED IN: nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: SF2/ASF-like splicing modulator (SRP30) (TAIR:AT1G09140.2); Has 29978 Blast hits to 14258 proteins in 625 species: Archae - 6; Bacteria - 2128; Metazoa - 19406; Fungi - 2132; Plants - 2358; Viruses - 738; Other Eukaryotes - 3210 (source: NCBI BLink).  protein_id AT3G49430.1p  transcript_id AT3G49430.1  protein_id AT3G49430.1p  transcript_id AT3G49430.1  
At3g49430	chr3:018332668	0.0	W/18332668-18332754,18332874-18332939,18333018-18333092,18333247-18333388,18333472-18333518,18333603-18333660,18333797-18333846,18333930-18333986,18334217-18334368,18334458-18334617	AT3G49430.2  CDS  gene_syn SRp34a, Ser/Arg-rich protein 34a  gene SRp34a  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process RNA splicing|GO:0008380|16807317|NAS  go_function RNA binding|GO:0003723||ISS  product SRp34a (Ser/Arg-rich protein 34a); RNA binding / nucleic acid binding / nucleotide binding  note Ser/Arg-rich protein 34a (SRp34a); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA splicing; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: SF2/ASF-like splicing modulator (SRP30) (TAIR:AT1G09140.2); Has 20686 Blast hits to 12122 proteins in 541 species: Archae - 6; Bacteria - 575; Metazoa - 13831; Fungi - 1523; Plants - 1904; Viruses - 513; Other Eukaryotes - 2334 (source: NCBI BLink).  protein_id AT3G49430.2p  transcript_id AT3G49430.2  protein_id AT3G49430.2p  transcript_id AT3G49430.2  
At3g49440	chr3:018335715	0.0	C/18335715-18336317	AT3G49440.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G31470.1); Has 283 Blast hits to 279 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 283; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G49440.1p  transcript_id AT3G49440.1  protein_id AT3G49440.1p  transcript_id AT3G49440.1  
At3g49450	chr3:018337305	0.0	C/18337305-18338498	AT3G49450.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G31470.1); Has 936 Blast hits to 907 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 936; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G49450.1p  transcript_id AT3G49450.1  protein_id AT3G49450.1p  transcript_id AT3G49450.1  
At3g49460	chr3:018340557	0.0	C/18340557-18340616,18340351-18340431	AT3G49460.1  CDS  go_component cytosolic ribosome|GO:0022626|17934214|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product 60S acidic ribosomal protein-related  note 60S acidic ribosomal protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosolic ribosome; BEST Arabidopsis thaliana protein match is: 60s acidic ribosomal protein P1, putative (TAIR:AT5G24510.1); Has 122 Blast hits to 122 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 30; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G49460.1p  transcript_id AT3G49460.1  protein_id AT3G49460.1p  transcript_id AT3G49460.1  
At3g49470	chr3:018341072	0.0	W/18341072-18341170,18341244-18341328,18341720-18341838,18341923-18342273	AT3G49470.1  CDS  gene_syn NACA2, NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2  gene NACA2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2)  note NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2 (NACA2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Nascent polypeptide-associated complex, alpha subunit (InterPro:IPR016641), Nascent polypeptide-associated complex NAC (InterPro:IPR002715); BEST Arabidopsis thaliana protein match is: nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative (TAIR:AT4G10480.1); Has 1168 Blast hits to 1151 proteins in 231 species: Archae - 23; Bacteria - 6; Metazoa - 522; Fungi - 246; Plants - 124; Viruses - 7; Other Eukaryotes - 240 (source: NCBI BLink).  protein_id AT3G49470.1p  transcript_id AT3G49470.1  protein_id AT3G49470.1p  transcript_id AT3G49470.1  
At3g49480	chr3:018342544	0.0	C/18342544-18343473	AT3G49480.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G05080.1); Has 443 Blast hits to 431 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 441; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G49480.1p  transcript_id AT3G49480.1  protein_id AT3G49480.1p  transcript_id AT3G49480.1  
At3g49490	chr3:018348360	0.0	C/18348360-18348648,18346739-18348198,18346386-18346484,18346143-18346317,18344926-18345764	AT3G49490.1  CDS  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 715 Blast hits to 169 proteins in 55 species: Archae - 0; Bacteria - 27; Metazoa - 87; Fungi - 47; Plants - 18; Viruses - 0; Other Eukaryotes - 536 (source: NCBI BLink).  protein_id AT3G49490.1p  transcript_id AT3G49490.1  protein_id AT3G49490.1p  transcript_id AT3G49490.1  
At3g49500	chr3:018350491	0.0	C/18350491-18353205,18349193-18350068	AT3G49500.1  CDS  gene_syn RDR6, RNA-DEPENDENT RNA POLYMERASE 6, SDE1, SGS2, SILENCING DEFECTIVE 1, SUPPRESSOR OF GENE SILENCING 2  gene RDR6  function Encodes RNA-dependent RNA polymerase. Involved in trans-acting siRNA and other siRNA biogenesis. Required for post-transcriptional gene silencing and natural virus resistance.  go_component nucleus|GO:0005634|17384170|IDA  go_process virus induced gene silencing|GO:0009616|17090584|IMP  go_process RNA interference, production of ta-siRNAs|GO:0010267|16131612|IMP  go_process RNA interference, production of ta-siRNAs|GO:0010267|16682354|IMP  go_process RNA interference|GO:0016246|10850496|IMP  go_process posttranscriptional gene silencing|GO:0016441|10850496|TAS  go_process RNA interference, production of siRNA|GO:0030422|15851028|TAS  go_process gene silencing by RNA|GO:0031047|17384170|IMP  go_process gene silencing by miRNA, production of miRNAs|GO:0035196|16682356|IMP  go_process leaf development|GO:0048366|16006579|IGI  go_process carpel development|GO:0048440|17468259|IGI  go_process defense response to virus|GO:0051607|16682354|IMP  go_function nucleic acid binding|GO:0003676||ISS  go_function RNA-directed RNA polymerase activity|GO:0003968|10850496|ISS  product RDR6 (RNA-DEPENDENT RNA POLYMERASE 6); RNA-directed RNA polymerase/ nucleic acid binding  note RNA-DEPENDENT RNA POLYMERASE 6 (RDR6); FUNCTIONS IN: RNA-directed RNA polymerase activity, nucleic acid binding; INVOLVED IN: in 10 processes; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-dependent RNA polymerase, eukaryotic-type (InterPro:IPR007855); BEST Arabidopsis thaliana protein match is: RDR1 (RNA-DEPENDENT RNA POLYMERASE 1); RNA-directed RNA polymerase/ nucleic acid binding (TAIR:AT1G14790.1); Has 369 Blast hits to 354 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 59; Fungi - 161; Plants - 114; Viruses - 2; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT3G49500.1p  transcript_id AT3G49500.1  protein_id AT3G49500.1p  transcript_id AT3G49500.1  
At3g49510	chr3:018353891	0.0	W/18353891-18354976,18355606-18356508	AT3G49510.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G49520.1); Has 1122 Blast hits to 657 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1120; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G49510.1p  transcript_id AT3G49510.1  protein_id AT3G49510.1p  transcript_id AT3G49510.1  
At3g49520	chr3:018359584	0.0	W/18359584-18360750	AT3G49520.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G49510.1); Has 566 Blast hits to 542 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 566; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G49520.1p  transcript_id AT3G49520.1  protein_id AT3G49520.1p  transcript_id AT3G49520.1  
At3g49530	chr3:018364540	0.0	C/18364540-18364717,18363989-18364269,18363655-18363894,18363266-18363562,18362961-18363170,18362639-18362842	AT3G49530.1  CDS  gene_syn Arabidopsis NAC domain containing protein 62, anac062  gene anac062  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_process response to chitin|GO:0010200|17722694|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac062 (Arabidopsis NAC domain containing protein 62); transcription factor  note Arabidopsis NAC domain containing protein 62 (anac062); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, response to chitin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: TIP (TCV-INTERACTING PROTEIN); transcription coactivator/ transcription factor (TAIR:AT5G24590.2); Has 1568 Blast hits to 1566 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1568; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G49530.1p  transcript_id AT3G49530.1  protein_id AT3G49530.1p  transcript_id AT3G49530.1  
At3g49540	chr3:018365800	0.0	W/18365800-18365895,18365999-18366403	AT3G49540.1  CDS  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; Has 8326 Blast hits to 4596 proteins in 687 species: Archae - 16; Bacteria - 1991; Metazoa - 1984; Fungi - 842; Plants - 266; Viruses - 74; Other Eukaryotes - 3153 (source: NCBI BLink).  protein_id AT3G49540.1p  transcript_id AT3G49540.1  protein_id AT3G49540.1p  transcript_id AT3G49540.1  
At3g49550	chr3:018368201	0.0	W/18368201-18368644	AT3G49550.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24610.1); Has 28 Blast hits to 28 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G49550.1p  transcript_id AT3G49550.1  protein_id AT3G49550.1p  transcript_id AT3G49550.1  
At3g49551	chr3:018368821	0.0	C/18368821-18368988	AT3G49551.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G49551.1p  transcript_id AT3G49551.1  protein_id AT3G49551.1p  transcript_id AT3G49551.1  
At3g49560	chr3:018370644	0.0	W/18370644-18370946,18371028-18371143,18371208-18371331,18371407-18371555,18371637-18371699,18371791-18371821	AT3G49560.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process protein transport|GO:0015031||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744||ISS  go_component plastid|GO:0009536|16618929|IDA  go_process protein transport|GO:0015031||ISS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein  note mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein; FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sterile alpha motif SAM (InterPro:IPR001660), Mitochondrial import inner membrane translocase, subunit Tim17/22 (InterPro:IPR003397); BEST Arabidopsis thaliana protein match is: mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (TAIR:AT5G24650.1); Has 56 Blast hits to 54 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G49560.1p  transcript_id AT3G49560.1  protein_id AT3G49560.1p  transcript_id AT3G49560.1  
At3g49570	chr3:018372659	0.0	C/18372659-18372952	AT3G49570.1  CDS  gene_syn LSU3, RESPONSE TO LOW SULFUR 3  gene LSU3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product LSU3 (RESPONSE TO LOW SULFUR 3)  note RESPONSE TO LOW SULFUR 3 (LSU3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: LSU2 (RESPONSE TO LOW SULFUR 2) (TAIR:AT5G24660.1); Has 43 Blast hits to 43 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G49570.1p  transcript_id AT3G49570.1  protein_id AT3G49570.1p  transcript_id AT3G49570.1  
At3g49580	chr3:018375435	0.0	C/18375435-18375719	AT3G49580.1  CDS  gene_syn LSU1, RESPONSE TO LOW SULFUR 1  gene LSU1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product LSU1 (RESPONSE TO LOW SULFUR 1)  note RESPONSE TO LOW SULFUR 1 (LSU1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: LSU3 (RESPONSE TO LOW SULFUR 3) (TAIR:AT3G49570.1); Has 45 Blast hits to 45 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G49580.1p  transcript_id AT3G49580.1  protein_id AT3G49580.1p  transcript_id AT3G49580.1  
At3g49590	chr3:018377892	0.0	W/18377892-18379202,18379311-18379492,18379786-18380104	AT3G49590.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 13 (InterPro:IPR018731); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18770.1); Has 1841 Blast hits to 549 proteins in 149 species: Archae - 0; Bacteria - 58; Metazoa - 305; Fungi - 125; Plants - 73; Viruses - 5; Other Eukaryotes - 1275 (source: NCBI BLink).  protein_id AT3G49590.1p  transcript_id AT3G49590.1  protein_id AT3G49590.1p  transcript_id AT3G49590.1  
At3g49590	chr3:018377892	0.0	W/18377892-18379202,18379311-18379492,18379786-18380104	AT3G49590.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 13 (InterPro:IPR018731); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18770.1); Has 1841 Blast hits to 549 proteins in 149 species: Archae - 0; Bacteria - 58; Metazoa - 305; Fungi - 125; Plants - 73; Viruses - 5; Other Eukaryotes - 1275 (source: NCBI BLink).  protein_id AT3G49590.2p  transcript_id AT3G49590.2  protein_id AT3G49590.2p  transcript_id AT3G49590.2  
At3g49600	chr3:018386586	0.0	C/18386586-18386662,18385905-18386498,18385494-18385749,18384360-18385069,18383946-18384054,18383550-18383728,18383132-18383416,18382847-18383054,18382515-18382586,18381845-18382057,18381344-18381607,18381114-18381255,18380942-18381036	AT3G49600.1  CDS  gene_syn ATUBP26, SUP32, UBIQUITIN-SPECIFIC PROTEASE 26, UBP26  gene UBP26  function Encodes a ubiquitin-specific protease which catalyzes deubiquitination of histone H2B and is required for heterochromatin silencing.Loss of function mutations display autonomous endosperm development and embryo arrest. Loss of function also results in an increase in expression of the PcG complex target gene PHE1.  go_component nucleolus|GO:0005730|15496452|IDA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_process seed development|GO:0048316|18723879|IMP  go_function ubiquitin-specific protease activity|GO:0004843||ISS  product UBP26 (UBIQUITIN-SPECIFIC PROTEASE 26); ubiquitin thiolesterase/ ubiquitin-specific protease  note UBIQUITIN-SPECIFIC PROTEASE 26 (UBP26); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: seed development; LOCATED IN: nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin-specific peptidase, DUSP domain (InterPro:IPR006615), Ubiquitin (InterPro:IPR000626), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12); ubiquitin thiolesterase/ ubiquitin-specific protease (TAIR:AT5G06600.3); Has 5569 Blast hits to 5148 proteins in 193 species: Archae - 0; Bacteria - 4; Metazoa - 3117; Fungi - 836; Plants - 461; Viruses - 3; Other Eukaryotes - 1148 (source: NCBI BLink).  protein_id AT3G49600.1p  transcript_id AT3G49600.1  protein_id AT3G49600.1p  transcript_id AT3G49600.1  
At3g49601	chr3:018387504	0.0	C/18387504-18389279	AT3G49601.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf21 (InterPro:IPR013170); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37820.1); Has 58354 Blast hits to 32469 proteins in 1203 species: Archae - 56; Bacteria - 5471; Metazoa - 26539; Fungi - 6511; Plants - 2874; Viruses - 282; Other Eukaryotes - 16621 (source: NCBI BLink).  protein_id AT3G49601.1p  transcript_id AT3G49601.1  protein_id AT3G49601.1p  transcript_id AT3G49601.1  
At3g49610	chr3:018390413	0.0	C/18390413-18391417	AT3G49610.1  CDS  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508), Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT5G24050.1); Has 61 Blast hits to 61 proteins in 3 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G49610.1p  transcript_id AT3G49610.1  protein_id AT3G49610.1p  transcript_id AT3G49610.1  
At3g49620	chr3:018393823	0.0	W/18393823-18393934,18394016-18394131,18394215-18394333,18394678-18394741,18394863-18394930,18395279-18395337,18395417-18395561,18395655-18395674,18395756-18395802,18396161-18396241,18396334-18396423,18396510-18396662	AT3G49620.1  CDS  gene_syn DARK INDUCIBLE 11, DIN11  gene DIN11  function encodes a protein similar to 2-oxoacid-dependent dioxygenase. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene s expression pattern is responding to the level of sugar in the cell.  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process aging|GO:0007568|11240919|IEP  go_process aging|GO:0007568|11240919|TAS  go_process cellular response to starvation|GO:0009267|11080291|TAS  go_process response to light stimulus|GO:0009416|11240919|IEP  go_process response to sucrose stimulus|GO:0009744|11240919|IEP  go_function oxidoreductase activity|GO:0016491||ISS  product DIN11 (DARK INDUCIBLE 11); iron ion binding / oxidoreductase  note DARK INDUCIBLE 11 (DIN11); FUNCTIONS IN: oxidoreductase activity, iron ion binding; INVOLVED IN: response to light stimulus, aging, response to sucrose stimulus, cellular response to starvation; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoacid-dependent oxidase, putative (TAIR:AT3G49630.1); Has 6126 Blast hits to 6089 proteins in 682 species: Archae - 0; Bacteria - 739; Metazoa - 127; Fungi - 675; Plants - 2959; Viruses - 0; Other Eukaryotes - 1626 (source: NCBI BLink).  protein_id AT3G49620.1p  transcript_id AT3G49620.1  protein_id AT3G49620.1p  transcript_id AT3G49620.1  
At3g49630	chr3:018397759	0.0	W/18397759-18398022,18398109-18398227,18398615-18398678,18398755-18398822,18398940-18398998,18399099-18399215,18399306-18399353,18399433-18399479,18399779-18399859,18399938-18400027,18400103-18400255	AT3G49630.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process aging|GO:0007568|11240919|TAS  go_process cellular response to starvation|GO:0009267|11080291|TAS  go_function oxidoreductase activity|GO:0016491||ISS  product 2-oxoacid-dependent oxidase, putative  note 2-oxoacid-dependent oxidase, putative; FUNCTIONS IN: oxidoreductase activity, iron ion binding; INVOLVED IN: aging, cellular response to starvation; LOCATED IN: endomembrane system; EXPRESSED IN: stem, root, carpel; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: DIN11 (DARK INDUCIBLE 11); iron ion binding / oxidoreductase (TAIR:AT3G49620.1); Has 5842 Blast hits to 5818 proteins in 658 species: Archae - 0; Bacteria - 694; Metazoa - 110; Fungi - 667; Plants - 2904; Viruses - 0; Other Eukaryotes - 1467 (source: NCBI BLink).  protein_id AT3G49630.1p  transcript_id AT3G49630.1  protein_id AT3G49630.1p  transcript_id AT3G49630.1  
At3g49640	chr3:018402574	0.0	C/18402574-18402593,18401915-18402067,18401708-18401816,18401483-18401619,18401255-18401391,18400994-18401100,18400783-18400910,18400480-18400561	AT3G49640.2  CDS  go_process tRNA processing|GO:0008033||IEA  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function tRNA dihydrouridine synthase activity|GO:0017150||IEA  go_function FAD binding|GO:0050660||IEA  go_process regulation of nitrogen utilization|GO:0006808||ISS  product FAD binding / catalytic/ tRNA dihydrouridine synthase  note FAD binding / catalytic/ tRNA dihydrouridine synthase; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity; INVOLVED IN: regulation of nitrogen utilization, oxidation reduction, tRNA processing, metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269), tRNA-dihydrouridine synthase, conserved site (InterPro:IPR018517); BEST Arabidopsis thaliana protein match is: nitrogen regulation family protein (TAIR:AT5G67220.1); Has 6902 Blast hits to 6900 proteins in 1405 species: Archae - 45; Bacteria - 4057; Metazoa - 406; Fungi - 342; Plants - 89; Viruses - 0; Other Eukaryotes - 1963 (source: NCBI BLink).  protein_id AT3G49640.2p  transcript_id AT3G49640.2  protein_id AT3G49640.2p  transcript_id AT3G49640.2  
At3g49640	chr3:018402765	0.0	C/18402765-18402809,18402574-18402679,18401915-18402053,18401708-18401816,18401483-18401619,18401255-18401391,18400994-18401100,18400783-18400910,18400480-18400561	AT3G49640.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process tRNA processing|GO:0008033||IEA  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function tRNA dihydrouridine synthase activity|GO:0017150||IEA  go_function FAD binding|GO:0050660||IEA  go_process regulation of nitrogen utilization|GO:0006808||ISS  product FAD binding / catalytic/ tRNA dihydrouridine synthase  note FAD binding / catalytic/ tRNA dihydrouridine synthase; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity; INVOLVED IN: regulation of nitrogen utilization, oxidation reduction, tRNA processing, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269), tRNA-dihydrouridine synthase, conserved site (InterPro:IPR018517); BEST Arabidopsis thaliana protein match is: nitrogen regulation family protein (TAIR:AT5G67220.1); Has 7045 Blast hits to 7042 proteins in 1406 species: Archae - 47; Bacteria - 4080; Metazoa - 412; Fungi - 346; Plants - 90; Viruses - 0; Other Eukaryotes - 2070 (source: NCBI BLink).  protein_id AT3G49640.1p  transcript_id AT3G49640.1  protein_id AT3G49640.1p  transcript_id AT3G49640.1  
At3g49645	chr3:018404366	0.0	C/18404366-18404427,18404202-18404269,18403984-18404124,18403766-18403807,18403536-18403654,18403343-18403444,18403129-18403257	AT3G49645.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 15 Blast hits to 15 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G49645.1p  transcript_id AT3G49645.1  protein_id AT3G49645.1p  transcript_id AT3G49645.1  
At3g49650	chr3:018409355	0.0	C/18409355-18409402,18409201-18409272,18408998-18409114,18408745-18408830,18408473-18408617,18408284-18408379,18407845-18407936,18407428-18407670,18407203-18407353,18407052-18407114,18406739-18406972,18406567-18406665,18406369-18406482,18405722-18406276,18405260-18405586	AT3G49650.1  CDS  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product kinesin motor protein-related  note kinesin motor protein-related; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATP binding / microtubule motor (TAIR:AT1G18550.1); Has 8744 Blast hits to 8296 proteins in 295 species: Archae - 13; Bacteria - 75; Metazoa - 4247; Fungi - 972; Plants - 892; Viruses - 75; Other Eukaryotes - 2470 (source: NCBI BLink).  protein_id AT3G49650.1p  transcript_id AT3G49650.1  protein_id AT3G49650.1p  transcript_id AT3G49650.1  
At3g49660	chr3:018413690	0.0	W/18413690-18414355,18414936-18415223	AT3G49660.1  CDS  go_component chloroplast|GO:0009507||IEA  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_process G-protein coupled receptor protein signaling pathway|GO:0007186||ISS  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: G-protein coupled receptor protein signaling pathway; LOCATED IN: chloroplast, heterotrimeric G-protein complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT4G02730.1); Has 87639 Blast hits to 32327 proteins in 763 species: Archae - 68; Bacteria - 8107; Metazoa - 40531; Fungi - 16825; Plants - 8416; Viruses - 9; Other Eukaryotes - 13683 (source: NCBI BLink).  protein_id AT3G49660.1p  transcript_id AT3G49660.1  protein_id AT3G49660.1p  transcript_id AT3G49660.1  
At3g49668	chr3:018417565	0.0	C/18417565-18418278	AT3G49668.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT3G49670  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G49668.1  
At3g49670	chr3:018417741	0.0	W/18417741-18420327,18420415-18420836	AT3G49670.1  CDS  gene_syn BAM2, BARELY ANY MERISTEM 2  gene BAM2  function Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM1,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM2 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs.  go_component plasma membrane|GO:0005886|17317660|IDA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_process regulation of meristem organization|GO:0009934|18780746|IGI  go_process regulation of meristem growth|GO:0010075|16367950|IGI  go_process microsporocyte differentiation|GO:0010480|16751349|IGI  go_process gametophyte development|GO:0048229|16367950|IGI  go_process leaf development|GO:0048366|16367950|IGI  go_process floral organ development|GO:0048437|16367950|IGI  go_process anther development|GO:0048653|16751349|IGI  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product BAM2 (BARELY ANY MERISTEM 2); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase  note BARELY ANY MERISTEM 2 (BAM2); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: in 9 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: BAM1 (BARELY ANY MERISTEM 1); ATP binding / kinase/ protein serine/threonine kinase (TAIR:AT5G65700.1); Has 146421 Blast hits to 98483 proteins in 3509 species: Archae - 76; Bacteria - 12392; Metazoa - 57570; Fungi - 7156; Plants - 48977; Viruses - 404; Other Eukaryotes - 19846 (source: NCBI BLink).  protein_id AT3G49670.1p  transcript_id AT3G49670.1  protein_id AT3G49670.1p  transcript_id AT3G49670.1  
At3g49680	chr3:018422768	0.0	W/18422768-18422893,18422969-18423051,18423133-18423310,18423963-18424142,18424248-18424379,18424471-18424569,18424647-18424763,18424955-18425050,18425153-18425265,18425356-18425473	AT3G49680.1  CDS  gene_syn ATBCAT-3, BCAT3, BRANCHED-CHAIN AMINOTRANSFERASE 3  gene BCAT3  function Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.  go_component chloroplast|GO:0009507|18431481|IDA  go_process metabolic process|GO:0008152||IEA  go_process branched chain family amino acid metabolic process|GO:0009081||IEA  go_component chloroplast|GO:0009507|12068099|IDA  go_function catalytic activity|GO:0003824||ISS  go_function branched-chain-amino-acid transaminase activity|GO:0004084|12068099|IGI  product BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3); branched-chain-amino-acid transaminase/ catalytic  note BRANCHED-CHAIN AMINOTRANSFERASE 3 (BCAT3); FUNCTIONS IN: branched-chain-amino-acid transaminase activity, catalytic activity; INVOLVED IN: branched chain family amino acid metabolic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Aminotransferase, class IV, conserved site (InterPro:IPR018300), Branched-chain amino acid aminotransferase II (InterPro:IPR005786); BEST Arabidopsis thaliana protein match is: ATBCAT-5; branched-chain-amino-acid transaminase/ catalytic (TAIR:AT5G65780.1); Has 8507 Blast hits to 8505 proteins in 1374 species: Archae - 99; Bacteria - 4035; Metazoa - 244; Fungi - 260; Plants - 157; Viruses - 0; Other Eukaryotes - 3712 (source: NCBI BLink).  protein_id AT3G49680.1p  transcript_id AT3G49680.1  protein_id AT3G49680.1p  transcript_id AT3G49680.1  
At3g49680	chr3:018422768	0.0	W/18422768-18422893,18422975-18423051,18423133-18423310,18423963-18424142,18424248-18424379,18424471-18424569,18424647-18424763,18424955-18425050,18425153-18425265,18425356-18425473	AT3G49680.2  CDS  gene_syn ATBCAT-3, BCAT3, BRANCHED-CHAIN AMINOTRANSFERASE 3  gene BCAT3  function Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.  go_component chloroplast|GO:0009507|18431481|IDA  go_process metabolic process|GO:0008152||IEA  go_process branched chain family amino acid metabolic process|GO:0009081||IEA  go_component chloroplast|GO:0009507|12068099|IDA  go_function catalytic activity|GO:0003824||ISS  go_function branched-chain-amino-acid transaminase activity|GO:0004084|12068099|IGI  product BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3); branched-chain-amino-acid transaminase/ catalytic  note BRANCHED-CHAIN AMINOTRANSFERASE 3 (BCAT3); FUNCTIONS IN: branched-chain-amino-acid transaminase activity, catalytic activity; INVOLVED IN: branched chain family amino acid metabolic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Aminotransferase, class IV, conserved site (InterPro:IPR018300), Branched-chain amino acid aminotransferase II (InterPro:IPR005786); BEST Arabidopsis thaliana protein match is: ATBCAT-5; branched-chain-amino-acid transaminase/ catalytic (TAIR:AT5G65780.1); Has 8519 Blast hits to 8517 proteins in 1377 species: Archae - 99; Bacteria - 4045; Metazoa - 244; Fungi - 262; Plants - 157; Viruses - 0; Other Eukaryotes - 3712 (source: NCBI BLink).  protein_id AT3G49680.2p  transcript_id AT3G49680.2  protein_id AT3G49680.2p  transcript_id AT3G49680.2  
At3g49690	chr3:018427941	0.0	W/18427941-18428076,18428212-18428341,18428434-18429100	AT3G49690.1  CDS  gene_syn ATMYB84, MYB DOMAIN PROTEIN 84, MYB84, RAX3, REGULATOR OF AXILLARY MERISTEMS3  gene MYB84  function Putative homolog of the Blind gene in tomato. Together with RAX1 and RAX3 belong to the class R2R3 MYB genes; encoded by the Myb-like transcription factor MYB84, regulates axillary meristem formation.   go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB84 (MYB DOMAIN PROTEIN 84); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 84 (MYB84); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, response to salicylic acid stimulus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB68 (MYB DOMAIN PROTEIN 68); DNA binding / transcription factor (TAIR:AT5G65790.1); Has 6114 Blast hits to 5726 proteins in 347 species: Archae - 0; Bacteria - 0; Metazoa - 591; Fungi - 256; Plants - 3788; Viruses - 3; Other Eukaryotes - 1476 (source: NCBI BLink).  protein_id AT3G49690.1p  transcript_id AT3G49690.1  protein_id AT3G49690.1p  transcript_id AT3G49690.1  
At3g49700	chr3:018435995	0.0	C/18435995-18436141,18435770-18435901,18435525-18435685,18434470-18435442	AT3G49700.1  CDS  gene_syn 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 9, ACS9, ETHYLENE OVERPRODUCING 3, ETO3  gene ACS9  function encodes a a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family. Mutants produce elevated levels of ethylene as etiolated seedlings.  go_process regulation of translation|GO:0006417|9952448|IDA  go_process ethylene biosynthetic process|GO:0009693|9952448|IMP  go_process ethylene biosynthetic process|GO:0009693||ISS  go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847|12968022|IDA  go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847||ISS  product ACS9 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 9); 1-aminocyclopropane-1-carboxylate synthase  note 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 9 (ACS9); FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate synthase activity; INVOLVED IN: ethylene biosynthetic process, regulation of translation; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase, class I and II (InterPro:IPR004839), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: ACS5 (ACC SYNTHASE 5); 1-aminocyclopropane-1-carboxylate synthase (TAIR:AT5G65800.1); Has 19964 Blast hits to 19960 proteins in 1688 species: Archae - 522; Bacteria - 11366; Metazoa - 597; Fungi - 473; Plants - 925; Viruses - 0; Other Eukaryotes - 6081 (source: NCBI BLink).  protein_id AT3G49700.1p  transcript_id AT3G49700.1  protein_id AT3G49700.1p  transcript_id AT3G49700.1  
At3g49710	chr3:018437845	0.0	W/18437845-18440010	AT3G49710.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 15949 Blast hits to 5184 proteins in 176 species: Archae - 0; Bacteria - 8; Metazoa - 127; Fungi - 71; Plants - 15381; Viruses - 0; Other Eukaryotes - 362 (source: NCBI BLink).  protein_id AT3G49710.1p  transcript_id AT3G49710.1  protein_id AT3G49710.1p  transcript_id AT3G49710.1  
At3g49720	chr3:018441533	0.0	C/18441533-18441655,18441384-18441423,18441261-18441299,18440741-18441115,18440597-18440652,18440192-18440344	AT3G49720.1  CDS  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65810.1); Has 32 Blast hits to 32 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G49720.1p  transcript_id AT3G49720.1  protein_id AT3G49720.1p  transcript_id AT3G49720.1  
At3g49720	chr3:018441533	0.0	C/18441533-18441655,18441384-18441423,18441261-18441299,18440741-18441115,18440597-18440652,18440192-18440344	AT3G49720.2  CDS  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65810.1); Has 32 Blast hits to 32 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G49720.2p  transcript_id AT3G49720.2  protein_id AT3G49720.2p  transcript_id AT3G49720.2  
At3g49725	chr3:018444884	0.0	C/18444884-18445397,18444726-18444790,18444552-18444614,18444371-18444460,18444180-18444292,18444012-18444089,18443773-18443917,18443626-18443681,18443486-18443536,18443342-18443396,18443198-18443254,18442980-18443099,18442448-18442903	AT3G49725.1  CDS  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_function GTP binding|GO:0005525||IEA  product GTP binding  note GTP binding; FUNCTIONS IN: GTP binding; LOCATED IN: intracellular, chloroplast; CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HflX (InterPro:IPR016496), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: GTP-binding family protein (TAIR:AT5G57960.1).  protein_id AT3G49725.1p  transcript_id AT3G49725.1  protein_id AT3G49725.1p  transcript_id AT3G49725.1  
At3g49730	chr3:018445730	0.0	C/18445730-18447646	AT3G49730.1  CDS  product unknown protein  note EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G65820.1); Has 25923 Blast hits to 13097 proteins in 1477 species: Archae - 105; Bacteria - 3757; Metazoa - 995; Fungi - 405; Plants - 17052; Viruses - 21; Other Eukaryotes - 3588 (source: NCBI BLink).  protein_id AT3G49730.1p  transcript_id AT3G49730.1  protein_id AT3G49730.1p  transcript_id AT3G49730.1  
At3g49740	chr3:018447788	0.0	W/18447788-18450001	AT3G49740.1  CDS  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G02010.1); Has 15938 Blast hits to 4694 proteins in 124 species: Archae - 0; Bacteria - 18; Metazoa - 46; Fungi - 79; Plants - 15470; Viruses - 0; Other Eukaryotes - 325 (source: NCBI BLink).  protein_id AT3G49740.1p  transcript_id AT3G49740.1  protein_id AT3G49740.1p  transcript_id AT3G49740.1  
At3g49744	chr3:018450232	0.0	C/18450232-18450405	AT3G49744.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G49744.1p  transcript_id AT3G49744.1  protein_id AT3G49744.1p  transcript_id AT3G49744.1  
At3g49750	chr3:018450604	0.0	C/18450604-18451428	AT3G49750.1  CDS  gene_syn AtRLP44, Receptor Like Protein 44  gene AtRLP44  go_component plasma membrane|GO:0005886|17644812|IDA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product AtRLP44 (Receptor Like Protein 44); protein binding  note Receptor Like Protein 44 (AtRLP44); FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT5G65830.1); Has 37763 Blast hits to 9232 proteins in 488 species: Archae - 16; Bacteria - 1150; Metazoa - 1956; Fungi - 137; Plants - 32378; Viruses - 0; Other Eukaryotes - 2126 (source: NCBI BLink).  protein_id AT3G49750.1p  transcript_id AT3G49750.1  protein_id AT3G49750.1p  transcript_id AT3G49750.1  
At3g49760	chr3:018455569	0.0	C/18455569-18456039	AT3G49760.1  CDS  gene_syn Arabidopsis thaliana basic leucine-zipper 5, AtbZIP5  gene AtbZIP5  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  product AtbZIP5 (Arabidopsis thaliana basic leucine-zipper 5); DNA binding / transcription factor  note Arabidopsis thaliana basic leucine-zipper 5 (AtbZIP5); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: pericycle, root stele, root, primary root elongation zone, primary root differentiation zone; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: AtbZIP6 (Arabidopsis thaliana basic leucine-zipper 6); DNA binding / transcription factor (TAIR:AT2G22850.1); Has 876 Blast hits to 876 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 70; Fungi - 2; Plants - 793; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT3G49760.1p  transcript_id AT3G49760.1  protein_id AT3G49760.1p  transcript_id AT3G49760.1  
At3g49765	chr3:018460141	0.0	W/18460141-18460581	AT3G49765.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 7.7e-20 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element)  
At3g49770	chr3:018461568	0.0	C/18461568-18461789,18461134-18461484	AT3G49770.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G49770.1p  transcript_id AT3G49770.1  protein_id AT3G49770.1p  transcript_id AT3G49770.1  
At3g49780	chr3:018465750	0.0	W/18465750-18465866,18466132-18466254	AT3G49780.1  CDS  gene_syn ATPSK3 (FORMER SYMBOL), ATPSK4, PHYTOSULFOKINE 4 PRECURSOR  gene ATPSK4  function Phytosulfokine 3 precursor, coding for a unique plant peptide growth factor. Plants overexpressing this gene (under a 35S promoter), develop normal cotyledons and hypocotyls but their growth, in particular that of their roots, was faster than that of wildtype.  go_function growth factor activity|GO:0008083||IEA  go_component extracellular matrix|GO:0031012|11706167|ISS  go_component extracellular matrix|GO:0031012|18643977|IDA  go_process cell proliferation|GO:0008283|11706167|ISS  go_process response to wounding|GO:0009611|16829587|IEP  go_process organ morphogenesis|GO:0009887|11706167|ISS  go_process cell differentiation|GO:0030154|11706167|ISS  product ATPSK4 (PHYTOSULFOKINE 4 PRECURSOR); growth factor  note PHYTOSULFOKINE 4 PRECURSOR (ATPSK4); FUNCTIONS IN: growth factor activity; INVOLVED IN: cell differentiation, cell proliferation, organ morphogenesis, response to wounding; LOCATED IN: extracellular matrix; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Phytosulfokine (InterPro:IPR009438); BEST Arabidopsis thaliana protein match is: ATPSK5 (PHYTOSULFOKINE 5 PRECURSOR); growth factor (TAIR:AT5G65870.1); Has 84 Blast hits to 84 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G49780.1p  transcript_id AT3G49780.1  protein_id AT3G49780.1p  transcript_id AT3G49780.1  
At3g49790	chr3:018468296	0.0	C/18468296-18469396	AT3G49790.1  CDS  go_function ATP binding|GO:0005524||IEA  go_process biological_process|GO:0008150||ND  product ATP binding  note ATP binding; FUNCTIONS IN: ATP binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: ATP-binding region, ATPase-like (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: carbohydrate binding (TAIR:AT1G10150.1); Has 54 Blast hits to 54 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G49790.1p  transcript_id AT3G49790.1  protein_id AT3G49790.1p  transcript_id AT3G49790.1  
At3g49796	chr3:018471057	0.0	W/18471057-18471302	AT3G49796.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G49796.1p  transcript_id AT3G49796.1  protein_id AT3G49796.1p  transcript_id AT3G49796.1  
At3g49800	chr3:018473088	0.0	C/18473088-18473676,18472714-18472901,18471957-18472466	AT3G49800.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product BSD domain-containing protein  note BSD domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT5G65910.1); Has 131 Blast hits to 121 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 1; Plants - 111; Viruses - 2; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G49800.1p  transcript_id AT3G49800.1  protein_id AT3G49800.1p  transcript_id AT3G49800.1  
At3g49810	chr3:018474936	0.0	C/18474936-18476282	AT3G49810.1  CDS  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  product U-box domain-containing protein  note U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein (TAIR:AT5G65920.1); Has 1192 Blast hits to 1152 proteins in 72 species: Archae - 0; Bacteria - 14; Metazoa - 67; Fungi - 24; Plants - 1010; Viruses - 3; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT3G49810.1p  transcript_id AT3G49810.1  protein_id AT3G49810.1p  transcript_id AT3G49810.1  
At3g49820	chr3:018481237	0.0	W/18481237-18481722	AT3G49820.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, hypocotyl, root, leaf; EXPRESSED DURING: LP.12 twelve leaves visible, LP.08 eight leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65925.1); Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G49820.1p  transcript_id AT3G49820.1  protein_id AT3G49820.1p  transcript_id AT3G49820.1  
At3g49830	chr3:018482383	0.0	W/18482383-18483134,18483271-18483940	AT3G49830.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function DNA helicase activity|GO:0003678||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process biological_process|GO:0008150||ND  product DNA helicase-related  note DNA helicase-related; FUNCTIONS IN: DNA helicase activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: TIP49, C-terminal (InterPro:IPR010339), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: DNA helicase, putative (TAIR:AT5G67630.1); Has 826 Blast hits to 824 proteins in 229 species: Archae - 56; Bacteria - 70; Metazoa - 260; Fungi - 205; Plants - 64; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).  protein_id AT3G49830.1p  transcript_id AT3G49830.1  protein_id AT3G49830.1p  transcript_id AT3G49830.1  
At3g49832	chr3:018484001	0.0	W/18484001-18484495	AT3G49832.1  pseudogenic_transcript  pseudo  function pseudogene of kelch repeat-containing F-box family  
At3g49840	chr3:018484551	0.0	W/18484551-18484662,18484830-18485040,18485122-18485288,18485359-18485504,18485584-18485646,18485718-18485810,18485897-18486058,18486154-18486334,18486449-18486687	AT3G49840.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G67610.1); Has 53 Blast hits to 53 proteins in 12 species: Archae - 0; Bacteria - 4; Metazoa - 3; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G49840.1p  transcript_id AT3G49840.1  protein_id AT3G49840.1p  transcript_id AT3G49840.1  
At3g49845	chr3:018487339	0.0	W/18487339-18487387,18487466-18487745,18487920-18487965	AT3G49845.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: XYPPX repeat (InterPro:IPR006031); Has 14038 Blast hits to 7746 proteins in 541 species: Archae - 8; Bacteria - 1083; Metazoa - 5225; Fungi - 1793; Plants - 3748; Viruses - 424; Other Eukaryotes - 1757 (source: NCBI BLink).  protein_id AT3G49845.1p  transcript_id AT3G49845.1  protein_id AT3G49845.1p  transcript_id AT3G49845.1  
At3g49850	chr3:018489451	0.0	W/18489451-18489600,18489678-18489892,18489997-18490081,18490194-18490277,18490378-18490731	AT3G49850.1  CDS  gene_syn ATTRB3, TBP2, TELOMERE REPEAT BINDING FACTOR 3, TELOMERE-BINDING PROTEIN 2, TRB3  gene TRB3  function Encodes a telomeric DNA binding protein. In vitro, the protein preferentially binds double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function double-stranded telomeric DNA binding|GO:0003691|15060584|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function protein homodimerization activity|GO:0042803|15060584|IPI  go_function single-stranded telomeric DNA binding|GO:0043047|15060584|IDA  product TRB3 (TELOMERE REPEAT BINDING FACTOR 3); DNA binding / double-stranded telomeric DNA binding / protein homodimerization/ single-stranded telomeric DNA binding / transcription factor  note TELOMERE REPEAT BINDING FACTOR 3 (TRB3); FUNCTIONS IN: single-stranded telomeric DNA binding, transcription factor activity, protein homodimerization activity, DNA binding, double-stranded telomeric DNA binding; INVOLVED IN: in 7 processes; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Histone H1/H5 (InterPro:IPR005818), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: TRB2; DNA binding / double-stranded telomeric DNA binding / protein homodimerization/ single-stranded telomeric DNA binding / transcription factor (TAIR:AT5G67580.2); Has 364 Blast hits to 360 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 24; Fungi - 47; Plants - 247; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT3G49850.1p  transcript_id AT3G49850.1  protein_id AT3G49850.1p  transcript_id AT3G49850.1  
At3g49860	chr3:018492070	0.0	C/18492070-18492165,18491948-18491980,18491723-18491844,18491476-18491637,18491261-18491378	AT3G49860.1  CDS  gene_syn ADP-ribosylation factor-like A1B, ATARLA1B  gene ATARLA1B  function A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.  go_component intracellular|GO:0005622||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525|12644670|ISS  product ATARLA1B (ADP-ribosylation factor-like A1B); GTP binding  note ADP-ribosylation factor-like A1B (ATARLA1B); FUNCTIONS IN: GTP binding; INVOLVED IN: intracellular protein transport, protein transport, small GTPase mediated signal transduction; LOCATED IN: intracellular; EXPRESSED IN: male gametophyte, hypocotyl, root, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), GTP-binding protein SAR1 (InterPro:IPR006687), Ras small GTPase, Ras type (InterPro:IPR003577), ARF/SAR superfamily (InterPro:IPR006689), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: ATARLA1C (ADP-ribosylation factor-like A1C); GTP binding (TAIR:AT3G49870.1); Has 13246 Blast hits to 13242 proteins in 433 species: Archae - 9; Bacteria - 146; Metazoa - 6735; Fungi - 1694; Plants - 1563; Viruses - 3; Other Eukaryotes - 3096 (source: NCBI BLink).  protein_id AT3G49860.1p  transcript_id AT3G49860.1  protein_id AT3G49860.1p  transcript_id AT3G49860.1  
At3g49870	chr3:018493984	0.0	C/18493984-18494021,18493456-18493537,18493324-18493356,18493111-18493232,18492873-18493034,18492674-18492791	AT3G49870.1  CDS  gene_syn ADP-ribosylation factor-like A1C, ATARLA1C  gene ATARLA1C  function A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_function GTP binding|GO:0005525|12644670|ISS  product ATARLA1C (ADP-ribosylation factor-like A1C); GTP binding  note ADP-ribosylation factor-like A1C (ATARLA1C); FUNCTIONS IN: GTP binding; LOCATED IN: nucleus, plasma membrane, vacuole, cytoplasm; EXPRESSED IN: male gametophyte, cultured cell, callus, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ATARLA1D (ADP-ribosylation factor-like A1D); GTP binding (TAIR:AT5G67560.1); Has 15144 Blast hits to 15138 proteins in 631 species: Archae - 17; Bacteria - 444; Metazoa - 7542; Fungi - 1835; Plants - 1622; Viruses - 3; Other Eukaryotes - 3681 (source: NCBI BLink).  protein_id AT3G49870.1p  transcript_id AT3G49870.1  protein_id AT3G49870.1p  transcript_id AT3G49870.1  
At3g49880	chr3:018496907	0.0	W/18496907-18497452,18497544-18498398	AT3G49880.1  CDS  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_component cellular_component|GO:0005575||ND  product glycosyl hydrolase family protein 43  note glycosyl hydrolase family protein 43; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 43 (InterPro:IPR006710); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family protein 43 (TAIR:AT5G67540.2); Has 528 Blast hits to 528 proteins in 105 species: Archae - 0; Bacteria - 368; Metazoa - 1; Fungi - 88; Plants - 27; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT3G49880.1p  transcript_id AT3G49880.1  protein_id AT3G49880.1p  transcript_id AT3G49880.1  
At3g49890	chr3:018499296	0.0	W/18499296-18499487,18499756-18499900,18499998-18500068,18500153-18500368,18500463-18500501	AT3G49890.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; Has 14 Blast hits to 14 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G49890.1p  transcript_id AT3G49890.1  protein_id AT3G49890.1p  transcript_id AT3G49890.1  
At3g49900	chr3:018502439	0.0	C/18502439-18502614,18502250-18502319,18501518-18502036,18500635-18501423	AT3G49900.1  CDS  go_function protein binding|GO:0005515||IEA  go_function protein binding|GO:0005515||ISS  product BTB/POZ domain-containing protein  note BTB/POZ domain-containing protein; FUNCTIONS IN: protein binding; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: phototropic-responsive NPH3 family protein (TAIR:AT5G13600.1); Has 648 Blast hits to 374 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 643; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G49900.1p  transcript_id AT3G49900.1  protein_id AT3G49900.1p  transcript_id AT3G49900.1  
At3g49910	chr3:018504311	0.0	W/18504311-18504751	AT3G49910.1  CDS  gene_syn F3A4.4  go_component nucleus|GO:0005634|14617066|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process response to cold|GO:0009409|14617066|IEP  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L26 (RPL26A)  note 60S ribosomal protein L26 (RPL26A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: response to cold, translation; LOCATED IN: in 8 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Ribosomal protein L26, eukaryotic/archaeal (InterPro:IPR005756), Ribosomal protein L24, SH3-like (InterPro:IPR014723), KOW (InterPro:IPR005824), Ribosomal protein L24/L26, conserved site (InterPro:IPR005825); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L26 (RPL26B) (TAIR:AT5G67510.1); Has 870 Blast hits to 870 proteins in 315 species: Archae - 232; Bacteria - 6; Metazoa - 311; Fungi - 91; Plants - 68; Viruses - 0; Other Eukaryotes - 162 (source: NCBI BLink).  protein_id AT3G49910.1p  transcript_id AT3G49910.1  protein_id AT3G49910.1p  transcript_id AT3G49910.1  
At3g49920	chr3:018507651	0.0	C/18507651-18507699,18507414-18507481,18506645-18506813,18506225-18506312,18505836-18506142	AT3G49920.1  CDS  gene_syn ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 5, ATVDAC5, F3A4.1, VDAC5, VOLTAGE DEPENDENT ANION CHANNEL 5  gene VDAC5  function Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.  go_component mitochondrial outer membrane|GO:0005741||IEA  go_process anion transport|GO:0006820||IEA  go_function voltage-gated anion channel activity|GO:0008308||IEA  go_component mitochondrial outer membrane|GO:0005741||ISS  go_process anion transport|GO:0006820||ISS  go_function voltage-gated anion channel activity|GO:0008308||ISS  product VDAC5 (VOLTAGE DEPENDENT ANION CHANNEL 5); voltage-gated anion channel  note VOLTAGE DEPENDENT ANION CHANNEL 5 (VDAC5); FUNCTIONS IN: voltage-gated anion channel activity; INVOLVED IN: anion transport; LOCATED IN: mitochondrial outer membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Porin, eukaryotic type (InterPro:IPR001925); BEST Arabidopsis thaliana protein match is: VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2); voltage-gated anion channel (TAIR:AT5G67500.1); Has 178 Blast hits to 175 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 4; Plants - 169; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G49920.1p  transcript_id AT3G49920.1  protein_id AT3G49920.1p  transcript_id AT3G49920.1  
At3g49925	chr3:018507812	0.0	W/18507812-18507885	AT3G49925.1  tRNA  gene_syn 67268.TRNA-VAL-1, 67269.TRNA-VAL-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Val (anticodon: AAC)  transcript_id AT3G49925.1  
At3g49930	chr3:018510246	0.0	W/18510246-18510893	AT3G49930.1  CDS  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1); DNA binding / nucleic acid binding / transcription factor/ transcription repressor/ zinc ion binding (TAIR:AT5G67450.1); Has 6274 Blast hits to 4361 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 5613; Fungi - 17; Plants - 476; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).  protein_id AT3G49930.1p  transcript_id AT3G49930.1  protein_id AT3G49930.1p  transcript_id AT3G49930.1  
At3g49940	chr3:018514465	0.0	W/18514465-18514648,18514743-18515302	AT3G49940.1  CDS  gene_syn LBD38, LOB DOMAIN-CONTAINING PROTEIN 38  gene LBD38  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38)  note LOB DOMAIN-CONTAINING PROTEIN 38 (LBD38); INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD37 (LOB DOMAIN-CONTAINING PROTEIN 37) (TAIR:AT5G67420.1); Has 325 Blast hits to 325 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 325; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G49940.1p  transcript_id AT3G49940.1  protein_id AT3G49940.1p  transcript_id AT3G49940.1  
At3g49950	chr3:018522570	0.0	W/18522570-18523802	AT3G49950.1  CDS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product scarecrow transcription factor family protein  note scarecrow transcription factor family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: shoot apex; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G67411.1); Has 1165 Blast hits to 1150 proteins in 165 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1163; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G49950.1p  transcript_id AT3G49950.1  protein_id AT3G49950.1p  transcript_id AT3G49950.1  
At3g49960	chr3:018525395	0.0	C/18525395-18525610,18525106-18525306,18524814-18524979,18524313-18524719	AT3G49960.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase 73 (PER73) (P73) (PRXR11) (TAIR:AT5G67400.1); Has 2922 Blast hits to 2910 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 105; Plants - 2773; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT3G49960.1p  transcript_id AT3G49960.1  protein_id AT3G49960.1p  transcript_id AT3G49960.1  
At3g49970	chr3:018529034	0.0	C/18529034-18529066,18528366-18528950,18527824-18528312,18527216-18527689	AT3G49970.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process response to light stimulus|GO:0009416||IEA  go_function signal transducer activity|GO:0004871||IEA  go_function protein binding|GO:0005515||IEA  go_process response to light stimulus|GO:0009416||ISS  go_function signal transducer activity|GO:0004871||ISS  product phototropic-responsive protein, putative  note phototropic-responsive protein, putative; FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: protein binding / signal transducer (TAIR:AT5G67385.1); Has 417 Blast hits to 407 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 0; Plants - 403; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G49970.1p  transcript_id AT3G49970.1  protein_id AT3G49970.1p  transcript_id AT3G49970.1  
At3g49980	chr3:018530329	0.0	C/18530329-18531477	AT3G49980.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G47300.1); Has 931 Blast hits to 907 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 927; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G49980.1p  transcript_id AT3G49980.1  protein_id AT3G49980.1p  transcript_id AT3G49980.1  
At3g49990	chr3:018532492	0.0	C/18532492-18534000	AT3G49990.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Low temperature viability protein (InterPro:IPR007307); Has 1404 Blast hits to 1163 proteins in 173 species: Archae - 5; Bacteria - 61; Metazoa - 489; Fungi - 146; Plants - 69; Viruses - 17; Other Eukaryotes - 617 (source: NCBI BLink).  protein_id AT3G49990.1p  transcript_id AT3G49990.1  protein_id AT3G49990.1p  transcript_id AT3G49990.1  
At3g50000	chr3:018534487	0.0	W/18534487-18534782,18535005-18535134,18535268-18535462,18535589-18535746,18535844-18535934,18536055-18536120,18536210-18536292,18536371-18536434,18536533-18536601,18536684-18536743	AT3G50000.1  CDS  gene_syn ATCKA2, ATPK15D, CASEIN KINASE II, ALPHA CHAIN 2, CKA2  gene CKA2  function casein kinase II catalytic subunit alpha  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301|8061317|IDA  go_function kinase activity|GO:0016301||ISS  product CKA2 (CASEIN KINASE II, ALPHA CHAIN 2); kinase  note CASEIN KINASE II, ALPHA CHAIN 2 (CKA2); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CKA1 (CASEIN KINASE ALPHA 1); kinase (TAIR:AT5G67380.1); Has 64670 Blast hits to 63945 proteins in 1579 species: Archae - 29; Bacteria - 5349; Metazoa - 28246; Fungi - 7540; Plants - 8884; Viruses - 282; Other Eukaryotes - 14340 (source: NCBI BLink).  protein_id AT3G50000.1p  transcript_id AT3G50000.1  protein_id AT3G50000.1p  transcript_id AT3G50000.1  
At3g50010	chr3:018537248	0.0	C/18537248-18539557	AT3G50010.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT5G48320.1); Has 1160 Blast hits to 467 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1159; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G50010.1p  transcript_id AT3G50010.1  protein_id AT3G50010.1p  transcript_id AT3G50010.1  
At3g50020	chr3:018542606	0.0	C/18542606-18542687,18542165-18542373	AT3G50020.1  CDS  function Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.  go_function serine-type endopeptidase inhibitor activity|GO:0004867||IEA  go_process defense response|GO:0006952|18674922|ISS  go_process response to wounding|GO:0009611||ISS  go_function serine-type endopeptidase inhibitor activity|GO:0004867||ISS  product serine protease inhibitor, potato inhibitor I-type family protein  note serine protease inhibitor, potato inhibitor I-type family protein; FUNCTIONS IN: serine-type endopeptidase inhibitor activity; INVOLVED IN: response to wounding, defense response; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I13, potato inhibitor I (InterPro:IPR000864); Has 21 Blast hits to 21 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G50020.1p  transcript_id AT3G50020.1  protein_id AT3G50020.1p  transcript_id AT3G50020.1  
At3g50022	chr3:018543560	0.0	C/18543560-18543709	AT3G50022.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G50022.1p  transcript_id AT3G50022.1  protein_id AT3G50022.1p  transcript_id AT3G50022.1  
At3g50030	chr3:018547412	0.0	C/18547412-18548132,18547156-18547342,18546490-18547087	AT3G50030.1  CDS  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT5G43120.1); Has 844 Blast hits to 815 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 572; Fungi - 109; Plants - 78; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT3G50030.1p  transcript_id AT3G50030.1  protein_id AT3G50030.1p  transcript_id AT3G50030.1  
At3g50040	chr3:018550389	0.0	C/18550389-18551019,18550257-18550301,18549752-18550173,18549489-18549656	AT3G50040.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37440.2); Has 40 Blast hits to 40 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G50040.1p  transcript_id AT3G50040.1  protein_id AT3G50040.1p  transcript_id AT3G50040.1  
At3g50050	chr3:018556844	0.0	C/18556844-18557115,18556645-18556765,18556131-18556558,18555862-18556018,18555685-18555767,18555497-18555596,18555277-18555349,18554973-18555149,18554754-18554878,18554567-18554668,18554386-18554483,18554138-18554300	AT3G50050.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT5G43100.1); Has 3656 Blast hits to 3640 proteins in 302 species: Archae - 0; Bacteria - 0; Metazoa - 1507; Fungi - 547; Plants - 1201; Viruses - 0; Other Eukaryotes - 401 (source: NCBI BLink).  protein_id AT3G50050.1p  transcript_id AT3G50050.1  protein_id AT3G50050.1p  transcript_id AT3G50050.1  
At3g50060	chr3:018558146	0.0	C/18558146-18559051	AT3G50060.1  CDS  gene_syn MYB77  gene MYB77  function Encodes a member of the R2R3 transcription factor gene family. Expressed in response to potassium deprivation and auxin. Involved in lateral root development. Interacts with ARF7 and regulates the expression of some auxin responsive genes.  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to chitin|GO:0010200|17722694|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_process lateral root development|GO:0048527|17675404|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB77; DNA binding / transcription factor  note MYB77; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 10 processes; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYBR1 (MYB DOMAIN PROTEIN R1); DNA binding / transcription factor (TAIR:AT5G67300.1); Has 6338 Blast hits to 5580 proteins in 358 species: Archae - 0; Bacteria - 2; Metazoa - 707; Fungi - 353; Plants - 3396; Viruses - 3; Other Eukaryotes - 1877 (source: NCBI BLink).  protein_id AT3G50060.1p  transcript_id AT3G50060.1  protein_id AT3G50060.1p  transcript_id AT3G50060.1  
At3g50070	chr3:018566199	0.0	C/18566199-18566669,18565919-18566120,18565702-18565832,18565322-18565603	AT3G50070.1  CDS  gene_syn CYCD3;3, CYCLIN D3;3  gene CYCD3;3  function Encode CYCD3;3, a CYCD3 D-type cyclin. Important for determining cell number in developing lateral organs. Mediating cytokinin effects in apical growth and development.  go_component nucleus|GO:0005634||IEA  go_process regulation of cell proliferation|GO:0042127|17726100|IGI  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase activity|GO:0004693||ISS  product CYCD3;3 (CYCLIN D3;3); cyclin-dependent protein kinase  note CYCLIN D3;3 (CYCD3;3); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle, regulation of cell proliferation; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCD3;2 (CYCLIN D3;2); cyclin-dependent protein kinase (TAIR:AT5G67260.1); Has 2404 Blast hits to 2402 proteins in 237 species: Archae - 0; Bacteria - 0; Metazoa - 1315; Fungi - 263; Plants - 599; Viruses - 3; Other Eukaryotes - 224 (source: NCBI BLink).  protein_id AT3G50070.1p  transcript_id AT3G50070.1  protein_id AT3G50070.1p  transcript_id AT3G50070.1  
At3g50080	chr3:018572788	0.0	W/18572788-18574356	AT3G50080.1  CDS  gene_syn VFB2, VIER F-BOX PROTEINE 2  gene VFB2  function Encodes an F-box protein. Based on genetic analysis appears to be functionally redundant with VFB1,3, and 4. When expression of all 4 genes is reduced plants show defects in growth and reduced expression of auxin response genes.  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cytoplasm|GO:0005737|17435085|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_function ubiquitin-protein ligase activity|GO:0004842|12169662|ISS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product VFB2 (VIER F-BOX PROTEINE 2); ubiquitin-protein ligase  note VIER F-BOX PROTEINE 2 (VFB2); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: N-terminal protein myristoylation, ubiquitin-dependent protein catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: SKIP2 (SKP1/ASK1 INTERACTING PROTEIN 2); ubiquitin-protein ligase (TAIR:AT5G67250.1); Has 3034 Blast hits to 1737 proteins in 145 species: Archae - 0; Bacteria - 13; Metazoa - 1436; Fungi - 220; Plants - 1042; Viruses - 0; Other Eukaryotes - 323 (source: NCBI BLink).  protein_id AT3G50080.1p  transcript_id AT3G50080.1  protein_id AT3G50080.1p  transcript_id AT3G50080.1  
At3g50090	chr3:018575432	0.0	W/18575432-18575446,18575542-18575622,18575714-18575782,18575878-18576021,18576124-18576240,18576321-18576359,18576480-18576572,18576658-18576789,18576874-18576987,18577071-18577172,18577274-18577336	AT3G50090.1  CDS  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function exonuclease activity|GO:0004527||IEA  go_component intracellular|GO:0005622||ISS  go_process biological_process|GO:0008150||ND  go_function exonuclease activity|GO:0004527||ISS  product exonuclease family protein  note exonuclease family protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T and DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: SDN1 (SMALL RNA DEGRADING NUCLEASE 1); 3 -5  exonuclease/ exonuclease (TAIR:AT3G50100.1); Has 1045 Blast hits to 1034 proteins in 165 species: Archae - 0; Bacteria - 4; Metazoa - 547; Fungi - 292; Plants - 107; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT3G50090.1p  transcript_id AT3G50090.1  protein_id AT3G50090.1p  transcript_id AT3G50090.1  
At3g50100	chr3:018578411	0.0	W/18578411-18578443,18578551-18578730,18578807-18578884,18578969-18579037,18579120-18579263,18579360-18579476,18579563-18579632,18579719-18579819,18579916-18580047,18580119-18580226,18580311-18580412,18580499-18580594	AT3G50100.1  CDS  gene_syn SDN1, SMALL RNA DEGRADING NUCLEASE 1  gene SDN1  function Encodes an exonuclease that degrades single-stranded small RNAs in vitro and limits the accumulation of small RNAs in vivo.  go_component intracellular|GO:0005622||IEA  go_component intracellular|GO:0005622||ISS  go_process miRNA catabolic process|GO:0010587|18787168|IDA  go_function exonuclease activity|GO:0004527||ISS  go_function 3 -5  exonuclease activity|GO:0008408|18787168|IDA  product SDN1 (SMALL RNA DEGRADING NUCLEASE 1); 3 -5  exonuclease/ exonuclease  note SMALL RNA DEGRADING NUCLEASE 1 (SDN1); FUNCTIONS IN: 3 -5  exonuclease activity, exonuclease activity; INVOLVED IN: miRNA catabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T and DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: SDN3 (SMALL RNA DEGRADING NUCLEASE 3); exonuclease/ nucleic acid binding (TAIR:AT5G67240.1); Has 1471 Blast hits to 1461 proteins in 234 species: Archae - 0; Bacteria - 115; Metazoa - 638; Fungi - 420; Plants - 160; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).  protein_id AT3G50100.1p  transcript_id AT3G50100.1  protein_id AT3G50100.1p  transcript_id AT3G50100.1  
At3g50110	chr3:018583354	0.0	C/18583354-18583929,18583009-18583110,18582858-18582914,18582612-18582677,18582294-18582470,18582112-18582198,18581962-18582026,18581796-18581872,18581673-18581719,18581440-18581570,18581295-18581364,18580777-18581220	AT3G50110.1  CDS  gene_syn ARABIDOPSIS THALIANA PTEN 3, ATPEN3  gene ATPEN3  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_process dephosphorylation|GO:0016311||IEA  go_function protein tyrosine phosphatase activity|GO:0004725||IEA  go_function protein tyrosine/serine/threonine phosphatase activity|GO:0008138||IEA  go_function phosphatase activity|GO:0016791||IEA  go_component cellular_component|GO:0005575||ND  product ATPEN3 (ARABIDOPSIS THALIANA PTEN 3); phosphatase/ protein tyrosine phosphatase/ protein tyrosine/serine/threonine phosphatase  note ARABIDOPSIS THALIANA PTEN 3 (ATPEN3); FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation, dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Phosphatase tensin type (InterPro:IPR014019), Protein-tyrosine phosphatase, dual specificity (InterPro:IPR000340), Tensin phosphatase, C2 domain (InterPro:IPR014020); BEST Arabidopsis thaliana protein match is: ATPEN2 (ARABIDOPSIS THALIANA PTEN 2); phosphatase/ protein tyrosine phosphatase (TAIR:AT3G19420.1); Has 4300 Blast hits to 1958 proteins in 193 species: Archae - 2; Bacteria - 2161; Metazoa - 1223; Fungi - 404; Plants - 85; Viruses - 3; Other Eukaryotes - 422 (source: NCBI BLink).  protein_id AT3G50110.1p  transcript_id AT3G50110.1  protein_id AT3G50110.1p  transcript_id AT3G50110.1  
At3g50120	chr3:018586606	0.0	C/18586606-18587246,18585994-18586523,18585157-18585581	AT3G50120.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, leaf apex, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50170.1); Has 535 Blast hits to 475 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 535; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G50120.1p  transcript_id AT3G50120.1  protein_id AT3G50120.1p  transcript_id AT3G50120.1  
At3g50123	chr3:018587974	0.0	W/18587974-18588117	AT3G50123.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G50123.1p  transcript_id AT3G50123.1  protein_id AT3G50123.1p  transcript_id AT3G50123.1  
At3g50130	chr3:018590474	0.0	C/18590474-18591222,18589842-18590362,18589111-18589535	AT3G50130.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: leaf apex, flower, root, carpel; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50140.1); Has 11332 Blast hits to 5843 proteins in 426 species: Archae - 26; Bacteria - 736; Metazoa - 4251; Fungi - 1025; Plants - 3281; Viruses - 557; Other Eukaryotes - 1456 (source: NCBI BLink).  protein_id AT3G50130.1p  transcript_id AT3G50130.1  protein_id AT3G50130.1p  transcript_id AT3G50130.1  
At3g50140	chr3:018593892	0.0	C/18593892-18594562,18593251-18593774,18592472-18592896	AT3G50140.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: leaf whorl, cotyledon, root, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, LP.12 twelve leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50190.1); Has 12821 Blast hits to 5335 proteins in 365 species: Archae - 30; Bacteria - 880; Metazoa - 4569; Fungi - 1105; Plants - 3176; Viruses - 1058; Other Eukaryotes - 2003 (source: NCBI BLink).  protein_id AT3G50140.1p  transcript_id AT3G50140.1  protein_id AT3G50140.1p  transcript_id AT3G50140.1  
At3g50150	chr3:018596947	0.0	C/18596947-18597551,18596373-18596872,18595809-18596233	AT3G50150.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50170.1); Has 522 Blast hits to 470 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 522; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G50150.1p  transcript_id AT3G50150.1  protein_id AT3G50150.1p  transcript_id AT3G50150.1  
At3g50160	chr3:018600260	0.0	C/18600260-18600903,18599577-18600013,18598826-18599256	AT3G50160.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50150.1); Has 513 Blast hits to 463 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 513; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G50160.1p  transcript_id AT3G50160.1  protein_id AT3G50160.1p  transcript_id AT3G50160.1  
At3g50170	chr3:018603068	0.0	C/18603068-18603738,18602337-18602949	AT3G50170.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, pedicel, flower, seed; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50120.1); Has 403 Blast hits to 400 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 403; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G50170.2p  transcript_id AT3G50170.2  protein_id AT3G50170.2p  transcript_id AT3G50170.2  
At3g50170	chr3:018603068	0.0	C/18603068-18603738,18602426-18602949,18601857-18602287	AT3G50170.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, pedicel, flower, seed; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50120.1); Has 543 Blast hits to 474 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 543; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G50170.1p  transcript_id AT3G50170.1  protein_id AT3G50170.1p  transcript_id AT3G50170.1  
At3g50180	chr3:018606297	0.0	C/18606297-18607162,18605718-18606181,18604943-18605379	AT3G50180.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: petiole, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50120.1); Has 18011 Blast hits to 9351 proteins in 578 species: Archae - 36; Bacteria - 1514; Metazoa - 7757; Fungi - 1678; Plants - 3698; Viruses - 831; Other Eukaryotes - 2497 (source: NCBI BLink).  protein_id AT3G50180.1p  transcript_id AT3G50180.1  protein_id AT3G50180.1p  transcript_id AT3G50180.1  
At3g50190	chr3:018610550	0.0	C/18610550-18611169,18610005-18610432,18609164-18609597	AT3G50190.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50140.1); Has 512 Blast hits to 461 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 510; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G50190.1p  transcript_id AT3G50190.1  protein_id AT3G50190.1p  transcript_id AT3G50190.1  
At3g50200	chr3:018612654	0.0	C/18612654-18613323,18612462-18612487	AT3G50200.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50170.2); Has 76 Blast hits to 61 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G50200.1p  transcript_id AT3G50200.1  protein_id AT3G50200.1p  transcript_id AT3G50200.1  
At3g50210	chr3:018615787	0.0	C/18615787-18615809,18615655-18615718,18615509-18615576,18615366-18615424,18615121-18615280,18615011-18615030,18614886-18614932,18614717-18614797,18614554-18614643,18614338-18614478	AT3G50210.2  CDS  go_function oxidoreductase activity|GO:0016491||IEA  go_process aging|GO:0007568|11240919|TAS  go_process cellular response to starvation|GO:0009267|11080291|TAS  go_function oxidoreductase activity|GO:0016491||ISS  product 2-oxoacid-dependent oxidase, putative  note 2-oxoacid-dependent oxidase, putative; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: aging, cellular response to starvation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: DIN11 (DARK INDUCIBLE 11); iron ion binding / oxidoreductase (TAIR:AT3G49620.1); Has 5610 Blast hits to 5602 proteins in 678 species: Archae - 0; Bacteria - 725; Metazoa - 121; Fungi - 630; Plants - 2877; Viruses - 0; Other Eukaryotes - 1257 (source: NCBI BLink).  protein_id AT3G50210.2p  transcript_id AT3G50210.2  protein_id AT3G50210.2p  transcript_id AT3G50210.2  
At3g50210	chr3:018616196	0.0	C/18616196-18616229,18615995-18616110,18615787-18615905,18615655-18615718,18615509-18615576,18615366-18615424,18615121-18615280,18615011-18615030,18614886-18614932,18614717-18614797,18614554-18614643,18614338-18614478	AT3G50210.1  CDS  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process aging|GO:0007568|11240919|TAS  go_process cellular response to starvation|GO:0009267|11080291|TAS  go_function oxidoreductase activity|GO:0016491||ISS  product 2-oxoacid-dependent oxidase, putative  note 2-oxoacid-dependent oxidase, putative; FUNCTIONS IN: oxidoreductase activity, iron ion binding; INVOLVED IN: aging, cellular response to starvation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: DIN11 (DARK INDUCIBLE 11); iron ion binding / oxidoreductase (TAIR:AT3G49620.1); Has 6172 Blast hits to 6127 proteins in 685 species: Archae - 0; Bacteria - 736; Metazoa - 131; Fungi - 690; Plants - 2990; Viruses - 0; Other Eukaryotes - 1625 (source: NCBI BLink).  protein_id AT3G50210.1p  transcript_id AT3G50210.1  protein_id AT3G50210.1p  transcript_id AT3G50210.1  
At3g50210	chr3:018616196	0.0	C/18616196-18616229,18615995-18616110,18615787-18615905,18615655-18615718,18615509-18615576,18615366-18615424,18615121-18615280,18615011-18615030,18614886-18614932,18614717-18614797,18614554-18614643,18614338-18614478	AT3G50210.3  CDS  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process aging|GO:0007568|11240919|TAS  go_process cellular response to starvation|GO:0009267|11080291|TAS  go_function oxidoreductase activity|GO:0016491||ISS  product 2-oxoacid-dependent oxidase, putative  note 2-oxoacid-dependent oxidase, putative; FUNCTIONS IN: oxidoreductase activity, iron ion binding; INVOLVED IN: aging, cellular response to starvation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: DIN11 (DARK INDUCIBLE 11); iron ion binding / oxidoreductase (TAIR:AT3G49620.1); Has 6172 Blast hits to 6127 proteins in 685 species: Archae - 0; Bacteria - 736; Metazoa - 131; Fungi - 690; Plants - 2990; Viruses - 0; Other Eukaryotes - 1625 (source: NCBI BLink).  protein_id AT3G50210.3p  transcript_id AT3G50210.3  protein_id AT3G50210.3p  transcript_id AT3G50210.3  
At3g50220	chr3:018617672	0.0	C/18617672-18618640	AT3G50220.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, inflorescence meristem, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579, plant (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G67210.1); Has 161 Blast hits to 161 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 152; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT3G50220.1p  transcript_id AT3G50220.1  protein_id AT3G50220.1p  transcript_id AT3G50220.1  
At3g50230	chr3:018620599	0.0	W/18620599-18622012,18622632-18623200	AT3G50230.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, embryo, flower, cultured cell, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT5G67200.1); Has 74315 Blast hits to 52629 proteins in 1701 species: Archae - 47; Bacteria - 5539; Metazoa - 20395; Fungi - 2996; Plants - 36785; Viruses - 165; Other Eukaryotes - 8388 (source: NCBI BLink).  protein_id AT3G50230.1p  transcript_id AT3G50230.1  protein_id AT3G50230.1p  transcript_id AT3G50230.1  
At3g50240	chr3:018628617	0.0	C/18628617-18628784,18628181-18628327,18627963-18628112,18627647-18627894,18627352-18627539,18627151-18627275,18626946-18626982,18626763-18626854,18626480-18626587,18626289-18626402,18626113-18626203,18625914-18626023,18625733-18625828,18625424-18625654,18625249-18625329,18625081-18625152,18624899-18624992,18624797-18624828,18624627-18624724,18624454-18624543,18624136-18624351,18623871-18624042,18623380-18623775	AT3G50240.1  CDS  gene_syn KICP-02  gene KICP-02  function Encodes a kinesin-related protein.  go_component microtubule associated complex|GO:0005875||IEA  go_component chloroplast|GO:0009507||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product KICP-02; ATP binding / microtubule motor  note KICP-02; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: FRA1 (FRAGILE FIBER 1); microtubule motor (TAIR:AT5G47820.2); Has 54384 Blast hits to 35182 proteins in 1298 species: Archae - 348; Bacteria - 4032; Metazoa - 29098; Fungi - 3952; Plants - 2215; Viruses - 104; Other Eukaryotes - 14635 (source: NCBI BLink).  protein_id AT3G50240.1p  transcript_id AT3G50240.1  protein_id AT3G50240.1p  transcript_id AT3G50240.1  
At3g50250	chr3:018630032	0.0	C/18630032-18630478	AT3G50250.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19270.1); Has 6 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G50250.1p  transcript_id AT3G50250.1  protein_id AT3G50250.1p  transcript_id AT3G50250.1  
At3g50260	chr3:018634687	0.0	W/18634687-18635148	AT3G50260.1  CDS  gene_syn ATERF 011, CEJ1, COOPERATIVELY REGULATED BY ETHYLENE AND JASMONATE 1  gene CEJ1  function encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to chitin|GO:0010200|17722694|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product CEJ1 (COOPERATIVELY REGULATED BY ETHYLENE AND JASMONATE 1); DNA binding / transcription factor  note COOPERATIVELY REGULATED BY ETHYLENE AND JASMONATE 1 (CEJ1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to chitin, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT5G67190.1); Has 3640 Blast hits to 3587 proteins in 188 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3636; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G50260.1p  transcript_id AT3G50260.1  protein_id AT3G50260.1p  transcript_id AT3G50260.1  
At3g50270	chr3:018635926	0.0	W/18635926-18637278	AT3G50270.1  CDS  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT3G50280.1); Has 1357 Blast hits to 1348 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 159; Plants - 1198; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G50270.1p  transcript_id AT3G50270.1  protein_id AT3G50270.1p  transcript_id AT3G50270.1  
At3g50280	chr3:018637854	0.0	W/18637854-18639185	AT3G50280.1  CDS  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT3G50300.1); Has 1311 Blast hits to 1305 proteins in 147 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 126; Plants - 1179; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G50280.1p  transcript_id AT3G50280.1  protein_id AT3G50280.1p  transcript_id AT3G50280.1  
At3g50290	chr3:018640172	0.0	W/18640172-18640993	AT3G50290.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_process biological_process|GO:0008150||ND  product transferase, transferring acyl groups other than amino-acyl groups  note transferase, transferring acyl groups other than amino-acyl groups; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT3G50280.1).  protein_id AT3G50290.1p  transcript_id AT3G50290.1  protein_id AT3G50290.1p  transcript_id AT3G50290.1  
At3g50295	chr3:018641798	0.0	W/18641798-18642664	AT3G50295.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At3g50300	chr3:018644043	0.0	W/18644043-18645389	AT3G50300.1  CDS  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT3G50280.1); Has 1226 Blast hits to 1222 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 146; Plants - 1078; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G50300.1p  transcript_id AT3G50300.1  protein_id AT3G50300.1p  transcript_id AT3G50300.1  
At3g50301	chr3:018645924	0.0	W/18645924-18646505	AT3G50301.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G49230; zinc finger (C3HC4-type RING finger) family protein  
At3g50310	chr3:018648296	0.0	C/18648296-18649324	AT3G50310.1  CDS  gene_syn MAPKKK20, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20  gene MAPKKK20  function member of MEKK subfamily  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product MAPKKK20; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note MAPKKK20; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: MAPKKK19; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G67080.1); Has 83405 Blast hits to 82391 proteins in 2424 species: Archae - 50; Bacteria - 6312; Metazoa - 37081; Fungi - 7557; Plants - 16601; Viruses - 443; Other Eukaryotes - 15361 (source: NCBI BLink).  protein_id AT3G50310.1p  transcript_id AT3G50310.1  protein_id AT3G50310.1p  transcript_id AT3G50310.1  
At3g50320	chr3:018654448	0.0	C/18654448-18654683,18653836-18654034	AT3G50320.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G50320.1p  transcript_id AT3G50320.1  protein_id AT3G50320.1p  transcript_id AT3G50320.1  
At3g50330	chr3:018657423	0.0	C/18657423-18658118	AT3G50330.1  CDS  gene_syn HEC2, HECATE 2  gene HEC2  go_component nucleus|GO:0005634||IEA  go_process transmitting tissue development|GO:0010500|17855426|IGI  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process carpel formation|GO:0048462|17855426|IMP  go_process ovary septum development|GO:0080126|17855426|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product HEC2 (HECATE 2); DNA binding / transcription factor  note HECATE 2 (HEC2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: ovary septum development, transmitting tissue development, carpel formation, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: gynoecium developmental stages, flower development stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: HEC1 (HECATE 1); transcription factor (TAIR:AT5G67060.1); Has 1605 Blast hits to 1605 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1605; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G50330.1p  transcript_id AT3G50330.1  protein_id AT3G50330.1p  transcript_id AT3G50330.1  
At3g50337	chr3:018663068	0.0	C/18663068-18663235	AT3G50337.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G50337.1p  transcript_id AT3G50337.1  protein_id AT3G50337.1p  transcript_id AT3G50337.1  
At3g50340	chr3:018665333	0.0	C/18665333-18666544	AT3G50340.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G67020.1); Has 59 Blast hits to 59 proteins in 21 species: Archae - 0; Bacteria - 23; Metazoa - 0; Fungi - 3; Plants - 32; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G50340.1p  transcript_id AT3G50340.1  protein_id AT3G50340.1p  transcript_id AT3G50340.1  
At3g50350	chr3:018672906	0.0	W/18672906-18672930,18673083-18673499,18673603-18673706	AT3G50350.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G33985.1); Has 93 Blast hits to 93 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G50350.1p  transcript_id AT3G50350.1  protein_id AT3G50350.1p  transcript_id AT3G50350.1  
At3g50360	chr3:018674421	0.0	W/18674421-18674423,18674654-18674808,18674888-18674915,18675009-18675161,18675244-18675346,18675435-18675502	AT3G50360.1  CDS  gene_syn ATCEN2, CEN1, CENTRIN 1, CENTRIN2  gene ATCEN2  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function calcium ion binding|GO:0005509||IEA  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product ATCEN2 (CENTRIN2); calcium ion binding  note CENTRIN2 (ATCEN2); FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: caltractin, putative / centrin, putative (TAIR:AT4G37010.2); Has 25773 Blast hits to 16030 proteins in 1342 species: Archae - 0; Bacteria - 125; Metazoa - 11739; Fungi - 5407; Plants - 4427; Viruses - 2; Other Eukaryotes - 4073 (source: NCBI BLink).  protein_id AT3G50360.1p  transcript_id AT3G50360.1  protein_id AT3G50360.1p  transcript_id AT3G50360.1  
At3g50370	chr3:018683786	0.0	C/18683786-18683863,18682601-18683673,18679231-18682516,18678944-18679134,18678700-18678847,18678183-18678381,18677824-18678096,18677099-18677745,18676436-18677011	AT3G50370.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; Has 43668 Blast hits to 22560 proteins in 1277 species: Archae - 119; Bacteria - 4801; Metazoa - 19184; Fungi - 3840; Plants - 1250; Viruses - 317; Other Eukaryotes - 14157 (source: NCBI BLink).  protein_id AT3G50370.1p  transcript_id AT3G50370.1  protein_id AT3G50370.1p  transcript_id AT3G50370.1  
At3g50373	chr3:018684845	0.0	C/18684845-18685121,18684659-18684828	AT3G50373.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G51360.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G50373.1p  transcript_id AT3G50373.1  protein_id AT3G50373.1p  transcript_id AT3G50373.1  
At3g50376	chr3:018685472	0.0	W/18685472-18686071	AT3G50376.1  pseudogenic_transcript  pseudo  function pseudogene of NLI interacting factor (NIF) family protein  
At3g50380	chr3:018700253	0.0	C/18700253-18700533,18700074-18700167,18697779-18699997,18697339-18697432,18695999-18696742,18695666-18695915,18695097-18695569,18694852-18694978,18694653-18694774,18693869-18694503,18693626-18693743,18693425-18693541,18693231-18693325,18692785-18692927,18692631-18692686,18692312-18692525,18691617-18692036,18691268-18691545,18691108-18691193,18690951-18691037,18690750-18690872,18690608-18690665,18690359-18690516,18690118-18690283,18689933-18690029,18689448-18689767,18689224-18689340,18688972-18689139,18688671-18688796,18688483-18688572,18688264-18688370,18688028-18688176,18687843-18687925,18687669-18687764,18687462-18687584,18687237-18687320,18686962-18687102,18686527-18686883	AT3G50380.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process protein localization|GO:0008104||IEA  product unknown protein  note INVOLVED IN: protein localization; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein (InterPro:IPR009543); Has 239 Blast hits to 235 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 71; Plants - 23; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT3G50380.1p  transcript_id AT3G50380.1  protein_id AT3G50380.1p  transcript_id AT3G50380.1  
At3g50390	chr3:018702137	0.0	W/18702137-18703546	AT3G50390.1  CDS  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: heterotrimeric G-protein complex; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT2G26490.1); Has 24623 Blast hits to 12904 proteins in 510 species: Archae - 30; Bacteria - 3554; Metazoa - 10491; Fungi - 5076; Plants - 2026; Viruses - 0; Other Eukaryotes - 3446 (source: NCBI BLink).  protein_id AT3G50390.1p  transcript_id AT3G50390.1  protein_id AT3G50390.1p  transcript_id AT3G50390.1  
At3g50400	chr3:018704797	0.0	W/18704797-18705058,18705158-18705288,18705509-18705757,18705830-18706088,18706214-18706437	AT3G50400.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT2G23540.1); Has 1904 Blast hits to 1887 proteins in 190 species: Archae - 0; Bacteria - 300; Metazoa - 1; Fungi - 18; Plants - 1566; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT3G50400.1p  transcript_id AT3G50400.1  protein_id AT3G50400.1p  transcript_id AT3G50400.1  
At3g50410	chr3:018709872	0.0	W/18709872-18710633	AT3G50410.1  CDS  gene_syn OBF BINDING PROTEIN 1, OBP1  gene OBP1  function Arabidopsis Dof protein containing a single 51-amino acid zinc finger DNA-binding domain, which may play an important roles in plant growth and development.  go_process response to auxin stimulus|GO:0009733|10758484|IEP  go_process response to salicylic acid stimulus|GO:0009751|10758484|IEP  go_process cell wall modification|GO:0042545|18665917|IMP  go_process positive regulation of cell cycle|GO:0045787|18665917|IMP  go_process positive regulation of transcription|GO:0045941|10758484|TAS  go_function DNA binding|GO:0003677|8718629|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  go_function protein binding|GO:0005515|8718629|IPI  product OBP1 (OBF BINDING PROTEIN 1); DNA binding / protein binding / transcription factor  note OBF BINDING PROTEIN 1 (OBP1); FUNCTIONS IN: protein binding, transcription factor activity, DNA binding; INVOLVED IN: response to auxin stimulus, positive regulation of transcription, positive regulation of cell cycle, cell wall modification, response to salicylic acid stimulus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT5G66940.1); Has 652 Blast hits to 648 proteins in 50 species: Archae - 0; Bacteria - 6; Metazoa - 13; Fungi - 5; Plants - 615; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT3G50410.1p  transcript_id AT3G50410.1  protein_id AT3G50410.1p  transcript_id AT3G50410.1  
At3g50420	chr3:018713604	0.0	C/18713604-18713649,18713280-18713407,18713104-18713183,18710871-18713001	AT3G50420.1  CDS  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G13650.1); Has 17052 Blast hits to 4902 proteins in 134 species: Archae - 0; Bacteria - 2; Metazoa - 113; Fungi - 83; Plants - 16532; Viruses - 0; Other Eukaryotes - 322 (source: NCBI BLink).  protein_id AT3G50420.1p  transcript_id AT3G50420.1  protein_id AT3G50420.1p  transcript_id AT3G50420.1  
At3g50430	chr3:018713718	0.0	W/18713718-18713783,18713881-18713946,18714039-18714092,18714188-18714292,18714362-18714448,18714529-18715113,18715229-18715660,18715759-18715820,18715903-18716008,18716103-18716182,18716395-18716640,18716720-18716759	AT3G50430.1  CDS  product unknown protein  note unknown protein; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 44 Blast hits to 44 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G50430.1p  transcript_id AT3G50430.1  protein_id AT3G50430.1p  transcript_id AT3G50430.1  
At3g50440	chr3:018717989	0.0	C/18717989-18718435,18717750-18717887,18717392-18717673	AT3G50440.1  CDS  gene_syn ARABIDOPSIS THALIANA METHYL ESTERASE 10, ATMES10, MES10, METHYL ESTERASE 10  gene MES10  function Encodes a protein shown to have methyl jasmonate esterase activity in vitro. This protein does not act on methyl IAA, MeSA, MeGA4, or MEGA9 in vitro.  go_function hydrolase activity|GO:0016787||ISS  go_function hydrolase activity, acting on ester bonds|GO:0016788|18467465|IDA  go_function methyl jasmonate esterase activity|GO:0080032|18467465|IDA  product MES10 (METHYL ESTERASE 10); hydrolase/ hydrolase, acting on ester bonds / methyl jasmonate esterase  note METHYL ESTERASE 10 (MES10); FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on ester bonds, methyl jasmonate esterase activity; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: MES1 (METHYL ESTERASE 1); hydrolase, acting on ester bonds / methyl indole-3-acetate esterase/ methyl jasmonate esterase/ methyl salicylate esterase (TAIR:AT2G23620.1); Has 963 Blast hits to 963 proteins in 230 species: Archae - 1; Bacteria - 491; Metazoa - 1; Fungi - 21; Plants - 334; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).  protein_id AT3G50440.1p  transcript_id AT3G50440.1  protein_id AT3G50440.1p  transcript_id AT3G50440.1  
At3g50450	chr3:018722415	0.0	W/18722415-18722710,18722862-18723135	AT3G50450.1  CDS  gene_syn HOMOLOG OF RPW8 1, HR1  gene HR1  function Homolog of RPW8  go_component endomembrane system|GO:0012505||IEA  go_process response to other organism|GO:0051707||ISS  go_function molecular_function|GO:0003674||ND  product HR1 (HOMOLOG OF RPW8 1)  note HOMOLOG OF RPW8 1 (HR1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Disease resistance, plant (InterPro:IPR014011), Mildew-resistance, broad-spectrum (InterPro:IPR008808); BEST Arabidopsis thaliana protein match is: HR3 (HOMOLOG OF RPW8 3) (TAIR:AT3G50470.1); Has 52 Blast hits to 52 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G50450.1p  transcript_id AT3G50450.1  protein_id AT3G50450.1p  transcript_id AT3G50450.1  
At3g50460	chr3:018727840	0.0	W/18727840-18728135,18728328-18728649	AT3G50460.1  CDS  gene_syn HOMOLOG OF RPW8 2, HR2  gene HR2  function Homolog of RPW8  go_process response to other organism|GO:0051707||ISS  go_function molecular_function|GO:0003674||ND  product HR2 (HOMOLOG OF RPW8 2)  note HOMOLOG OF RPW8 2 (HR2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; CONTAINS InterPro DOMAIN/s: Disease resistance, plant (InterPro:IPR014011), Mildew-resistance, broad-spectrum (InterPro:IPR008808); BEST Arabidopsis thaliana protein match is: HR3 (HOMOLOG OF RPW8 3) (TAIR:AT3G50470.1); Has 51 Blast hits to 51 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G50460.1p  transcript_id AT3G50460.1  protein_id AT3G50460.1p  transcript_id AT3G50460.1  
At3g50470	chr3:018729146	0.0	W/18729146-18729441,18729817-18730162	AT3G50470.1  CDS  gene_syn HOMOLOG OF RPW8 3, HR3, INTRACELLULAR MILDEW A 10, MLA10  gene HR3  function Homolog of RPW8  go_process response to other organism|GO:0051707||ISS  go_function molecular_function|GO:0003674||ND  product HR3 (HOMOLOG OF RPW8 3)  note HOMOLOG OF RPW8 3 (HR3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; CONTAINS InterPro DOMAIN/s: Disease resistance, plant (InterPro:IPR014011), Mildew-resistance, broad-spectrum (InterPro:IPR008808); BEST Arabidopsis thaliana protein match is: HR2 (HOMOLOG OF RPW8 2) (TAIR:AT3G50460.1); Has 68 Blast hits to 68 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 2; Plants - 56; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G50470.1p  transcript_id AT3G50470.1  protein_id AT3G50470.1p  transcript_id AT3G50470.1  
At3g50480	chr3:018733287	0.0	W/18733287-18733597,18733889-18734180	AT3G50480.1  CDS  gene_syn HOMOLOG OF RPW8 4, HR4  gene HR4  function Homolog of RPW8  go_component endomembrane system|GO:0012505||IEA  go_process response to other organism|GO:0051707||ISS  go_function molecular_function|GO:0003674||ND  product HR4 (HOMOLOG OF RPW8 4)  note HOMOLOG OF RPW8 4 (HR4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Disease resistance, plant (InterPro:IPR014011), Mildew-resistance, broad-spectrum (InterPro:IPR008808); BEST Arabidopsis thaliana protein match is: HR3 (HOMOLOG OF RPW8 3) (TAIR:AT3G50470.1); Has 76 Blast hits to 60 proteins in 13 species: Archae - 14; Bacteria - 4; Metazoa - 1; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT3G50480.1p  transcript_id AT3G50480.1  protein_id AT3G50480.1p  transcript_id AT3G50480.1  
At3g50490	chr3:018738630	0.0	W/18738630-18739261	AT3G50490.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.3e-13 P-value blast match to GB:AAC24836 pol polyprotein (Ty1_Copia-element) (Candida albicans)  
At3g50500	chr3:018743728	0.0	C/18743728-18743904,18743423-18743497,18743222-18743323,18743092-18743145,18742904-18742996,18742602-18742694,18742378-18742482,18742170-18742268,18741805-18742095	AT3G50500.1  CDS  gene_syn PROTEIN KINASE, SNF1-RELATED PROTEIN KINASE 2-2, SNF1-RELATED PROTEIN KINASE 2.2, SNRK2-2, SNRK2.2, SPK-2-2, SRK2D  gene SNRK2.2  function encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Enzyme involved in the ABA signaling during seed germination, dormancy and seedling growth.  go_component cytosol|GO:0005829|18433157|IDA  go_process response to osmotic stress|GO:0006970|15292193|IDA  go_process response to salt stress|GO:0009651|15292193|IDA  go_process response to abscisic acid stimulus|GO:0009737|15292193|IDA  go_process response to abscisic acid stimulus|GO:0009737|17307925|IDA  go_process response to gibberellin stimulus|GO:0009739|18941053|IGI  go_process positive regulation of abscisic acid mediated signaling|GO:0009789|17307925|IGI  go_process regulation of seed germination|GO:0010029|18941053|IGI  go_function protein kinase activity|GO:0004672|17307925|IDA  go_function kinase activity|GO:0016301|15292193|IDA  go_function kinase activity|GO:0016301||ISS  product SNRK2.2 (SNF1-RELATED PROTEIN KINASE 2.2); kinase/ protein kinase  note SNF1-RELATED PROTEIN KINASE 2.2 (SNRK2.2); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: in 6 processes; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Plant protein serine/threonine kinase-like (InterPro:IPR015740), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: SNRK2.3 (SUCROSE NONFERMENTING 1(SNF1)-RELATED PROTEIN KINASE 2.3); kinase/ protein kinase (TAIR:AT5G66880.1); Has 84990 Blast hits to 83685 proteins in 2200 species: Archae - 45; Bacteria - 7541; Metazoa - 36889; Fungi - 8111; Plants - 15418; Viruses - 451; Other Eukaryotes - 16535 (source: NCBI BLink).  protein_id AT3G50500.1p  transcript_id AT3G50500.1  protein_id AT3G50500.1p  transcript_id AT3G50500.1  
At3g50505	chr3:018744808	0.0	C/18744808-18744879	AT3G50505.1  tRNA  gene_syn 67271.TRNA-GLU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Glu (anticodon: TTC)  transcript_id AT3G50505.1  
At3g50510	chr3:018745002	0.0	C/18745002-18745598	AT3G50510.1  CDS  gene_syn LBD28, LOB DOMAIN-CONTAINING PROTEIN 28  gene LBD28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product LBD28 (LOB DOMAIN-CONTAINING PROTEIN 28)  note LOB DOMAIN-CONTAINING PROTEIN 28 (LBD28); INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD10 (LOB DOMAIN-CONTAINING PROTEIN 10) (TAIR:AT2G23660.2); Has 504 Blast hits to 501 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 504; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G50510.1p  transcript_id AT3G50510.1  protein_id AT3G50510.1p  transcript_id AT3G50510.1  
At3g50520	chr3:018748058	0.0	W/18748058-18748077,18748162-18748240,18748418-18748468,18748548-18748658,18748811-18748942,18749023-18749098,18749195-18749418	AT3G50520.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function catalytic activity|GO:0003824||ISS  product phosphoglycerate/bisphosphoglycerate mutase family protein  note phosphoglycerate/bisphosphoglycerate mutase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078), Phosphoglycerate/bisphosphoglycerate mutase (InterPro:IPR001345); BEST Arabidopsis thaliana protein match is: phosphoglycerate/bisphosphoglycerate mutase family protein (TAIR:AT5G04120.1); Has 9399 Blast hits to 9238 proteins in 1349 species: Archae - 57; Bacteria - 5794; Metazoa - 739; Fungi - 340; Plants - 143; Viruses - 0; Other Eukaryotes - 2326 (source: NCBI BLink).  protein_id AT3G50520.1p  transcript_id AT3G50520.1  protein_id AT3G50520.1p  transcript_id AT3G50520.1  
At3g50530	chr3:018753833	0.0	W/18753833-18754390,18754496-18754626,18754715-18754756,18754836-18754944,18755027-18755105,18755199-18755495,18755563-18755675,18755753-18755860,18755950-18756012,18756098-18756265,18756350-18756487	AT3G50530.1  CDS  gene_syn CDPK-related kinase, CRK  gene CRK  function CDPK-related kinase  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function calcium-dependent protein serine/threonine phosphatase activity|GO:0004723||ISS  go_function calcium ion binding|GO:0005509||ISS  go_function kinase activity|GO:0016301||ISS  product CRK (CDPK-related kinase); ATP binding / calcium ion binding / calcium-dependent protein serine/threonine phosphatase/ kinase/ protein kinase/ protein serine/threonine kinase  note CDPK-related kinase (CRK); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CRK1 (CDPK-RELATED KINASE 1); calcium ion binding / calcium-dependent protein serine/threonine phosphatase/ calmodulin-dependent protein kinase/ kinase (TAIR:AT2G41140.1); Has 86284 Blast hits to 84900 proteins in 1987 species: Archae - 77; Bacteria - 8190; Metazoa - 37362; Fungi - 8541; Plants - 13918; Viruses - 521; Other Eukaryotes - 17675 (source: NCBI BLink).  protein_id AT3G50530.1p  transcript_id AT3G50530.1  protein_id AT3G50530.1p  transcript_id AT3G50530.1  
At3g50540	chr3:018757749	0.0	W/18757749-18757823,18758066-18758140	AT3G50540.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G50540.1p  transcript_id AT3G50540.1  protein_id AT3G50540.1p  transcript_id AT3G50540.1  
At3g50550	chr3:018759486	0.0	W/18759486-18759546,18759776-18759844,18760082-18760095	AT3G50550.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G50550.2p  transcript_id AT3G50550.2  protein_id AT3G50550.2p  transcript_id AT3G50550.2  
At3g50550	chr3:018759486	0.0	W/18759486-18759616,18759702-18759844,18760082-18760095	AT3G50550.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 74941 Blast hits to 18323 proteins in 819 species: Archae - 262; Bacteria - 31363; Metazoa - 17441; Fungi - 7022; Plants - 2364; Viruses - 970; Other Eukaryotes - 15519 (source: NCBI BLink).  protein_id AT3G50550.1p  transcript_id AT3G50550.1  protein_id AT3G50550.1p  transcript_id AT3G50550.1  
At3g50560	chr3:018763694	0.0	C/18763694-18763835,18762566-18762831,18762053-18762146,18761836-18761947,18761247-18761451	AT3G50560.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT5G10050.1); Has 18677 Blast hits to 18675 proteins in 1420 species: Archae - 161; Bacteria - 12385; Metazoa - 1272; Fungi - 507; Plants - 217; Viruses - 0; Other Eukaryotes - 4135 (source: NCBI BLink).  protein_id AT3G50560.1p  transcript_id AT3G50560.1  protein_id AT3G50560.1p  transcript_id AT3G50560.1  
At3g50570	chr3:018766918	0.0	C/18766918-18767487	AT3G50570.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, 4 leaf senescence stage, LP.02 two leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G44224.1); Has 999 Blast hits to 649 proteins in 130 species: Archae - 0; Bacteria - 228; Metazoa - 356; Fungi - 62; Plants - 137; Viruses - 5; Other Eukaryotes - 211 (source: NCBI BLink).  protein_id AT3G50570.1p  transcript_id AT3G50570.1  protein_id AT3G50570.1p  transcript_id AT3G50570.1  
At3g50580	chr3:018768767	0.0	C/18768767-18769519	AT3G50580.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G44191.1); Has 116179 Blast hits to 44611 proteins in 1670 species: Archae - 379; Bacteria - 19713; Metazoa - 42232; Fungi - 14182; Plants - 14876; Viruses - 3891; Other Eukaryotes - 20906 (source: NCBI BLink).  protein_id AT3G50580.1p  transcript_id AT3G50580.1  protein_id AT3G50580.1p  transcript_id AT3G50580.1  
At3g50590	chr3:018771292	0.0	W/18771292-18771427,18771509-18771618,18771725-18771890,18771977-18772077,18772174-18772246,18772351-18772486,18772594-18772754,18772880-18773039,18773086-18773185,18773370-18773446,18773580-18773631,18773722-18773814,18773897-18774043,18774116-18774278,18774597-18774827,18774938-18775092,18775477-18775605,18775713-18775830,18775911-18776106,18776286-18776397,18776481-18776635,18776940-18778329,18778448-18778642,18778744-18779220	AT3G50590.1  CDS  gene_syn AT3G50600  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product nucleotide binding  note nucleotide binding; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); Has 1880 Blast hits to 1646 proteins in 270 species: Archae - 0; Bacteria - 344; Metazoa - 848; Fungi - 287; Plants - 145; Viruses - 23; Other Eukaryotes - 233 (source: NCBI BLink).  protein_id AT3G50590.1p  transcript_id AT3G50590.1  protein_id AT3G50590.1p  transcript_id AT3G50590.1  
At3g50610	chr3:018779723	0.0	C/18779723-18780412	AT3G50610.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66816.1); Has 58 Blast hits to 28 proteins in 9 species: Archae - 0; Bacteria - 2; Metazoa - 7; Fungi - 4; Plants - 39; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G50610.1p  transcript_id AT3G50610.1  protein_id AT3G50610.1p  transcript_id AT3G50610.1  
At3g50620	chr3:018786718	0.0	C/18786718-18786747,18786073-18786302,18785719-18785977,18785472-18785651,18785240-18785395,18784993-18785160	AT3G50620.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nodulation protein-related  note nodulation protein-related; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G15730.1); Has 94 Blast hits to 94 proteins in 26 species: Archae - 0; Bacteria - 40; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G50620.1p  transcript_id AT3G50620.1  protein_id AT3G50620.1p  transcript_id AT3G50620.1  
At3g50625	chr3:018791543	0.0	W/18791543-18796042	AT3G50625.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 6.1e-96 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element)  
At3g50630	chr3:018800508	0.0	W/18800508-18800834,18800911-18800972,18801057-18801224,18801294-18801366	AT3G50630.1  CDS  gene_syn ICK2, KIP-RELATED PROTEIN 2, KRP2  gene KRP2  function Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. Gene was isolated from a yeast two hybrid screen as an interacting protein of CDC2A. Recombinant protein has a strong kinase inhibitor activity in vitro. Transcript is expressed in all tissues examined but is differentially distributed from ICK1. Controls the onset of the endoreduplication cycle through inhibition of CDKA;1. The KRP2 protein abundance is regulated by proteolysis through CDKB1;1 phosphorylation.  go_component nucleus|GO:0005634||IEA  go_process DNA endoreduplication|GO:0042023|15863515|IMP  go_process negative regulation of cyclin-dependent protein kinase activity|GO:0045736|10758489|ISS  go_process negative regulation of cyclin-dependent protein kinase activity|GO:0045736|16376885|IDA  go_function cyclin-dependent protein kinase inhibitor activity|GO:0004861|10758489|ISS  go_function protein binding|GO:0005515|15863515|IPI  go_function kinase inhibitor activity|GO:0019210|10758489|IDA  product KRP2 (KIP-RELATED PROTEIN 2); cyclin-dependent protein kinase inhibitor/ kinase inhibitor/ protein binding  note KIP-RELATED PROTEIN 2 (KRP2); FUNCTIONS IN: protein binding, kinase inhibitor activity, cyclin-dependent protein kinase inhibitor activity; INVOLVED IN: negative regulation of cyclin-dependent protein kinase activity, DNA endoreduplication; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-dependent kinase inhibitor (InterPro:IPR003175), Cyclin-dependent kinase inhibitor, plant (InterPro:IPR016701); BEST Arabidopsis thaliana protein match is: ICK1; cyclin-dependent protein kinase inhibitor (TAIR:AT2G23430.1); Has 59 Blast hits to 59 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G50630.1p  transcript_id AT3G50630.1  protein_id AT3G50630.1p  transcript_id AT3G50630.1  
At3g50640	chr3:018804183	0.0	C/18804183-18804639,18804027-18804070	AT3G50640.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66800.1); Has 34 Blast hits to 34 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G50640.1p  transcript_id AT3G50640.1  protein_id AT3G50640.1p  transcript_id AT3G50640.1  
At3g50650	chr3:018806472	0.0	C/18806472-18808100	AT3G50650.1  CDS  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product scarecrow-like transcription factor 7 (SCL7)  note scarecrow-like transcription factor 7 (SCL7); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: scarecrow transcription factor family protein (TAIR:AT5G66770.1); Has 1788 Blast hits to 1748 proteins in 287 species: Archae - 0; Bacteria - 20; Metazoa - 185; Fungi - 88; Plants - 1413; Viruses - 12; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT3G50650.1p  transcript_id AT3G50650.1  protein_id AT3G50650.1p  transcript_id AT3G50650.1  
At3g50651	chr3:018808691	0.0	W/18808691-18808882	AT3G50651.1  CDS  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G50651.1p  transcript_id AT3G50651.1  protein_id AT3G50651.1p  transcript_id AT3G50651.1  
At3g50660	chr3:018816948	0.0	C/18816948-18817168,18816543-18816867,18816305-18816457,18815892-18816206,18815647-18815739,18815477-18815555,18815260-18815369,18814262-18814507	AT3G50660.1  CDS  gene_syn CLM, CLOMAZONE-RESISTANT, CYP90B1, CYTOCHROME P450 90B1, DWARF 4, DWF4, SAV1, SHADE AVOIDANCE 1, SNP2, STEROID 22-ALPHA-HYDROXYLASE, SUPPRESSOR OF NPH4 2  gene DWF4  function Encodes a 22& 945; hydroxylase whose reaction is a rate-limiting step in brassinosteroid biosynthetic pathway. The protein is a member of CYP90B gene family. CLM is an epi-allele with small, compressed rosette, reduced internode length, and reduced fertility, appears in selfed ddm mutant plants possibly due to loss of cytosine methylation. Transcripts accumulate in actively growing tissues, and GUS expression is negatively regulated by brassinosteroids. Localized in the endoplasmic reticulum. The in vitro expressed protein can perform the C-22 hydroxylation of a variety of C27-, C28- and C29-sterols. Cholesterol was the best substrate, followed by campesterol. Sitosterol was a poor substrate.  go_component endoplasmic reticulum|GO:0005783|16407451|IDA  go_process response to brassinosteroid stimulus|GO:0009741|16407451|IEP  go_process response to brassinosteroid stimulus|GO:0009741|16407451|IMP  go_process unidimensional cell growth|GO:0009826|9490745|IMP  go_process leaf shaping|GO:0010358|17908154|IMP  go_process brassinosteroid biosynthetic process|GO:0016132|9490746|IMP  go_process leaf development|GO:0048366|17908154|IMP  go_function steroid 22-alpha hydroxylase activity|GO:0010012|11319239|IDA  go_function steroid 22-alpha hydroxylase activity|GO:0010012|16460510|IDA  product DWF4 (DWARF 4); steroid 22-alpha hydroxylase  note DWARF 4 (DWF4); FUNCTIONS IN: steroid 22-alpha hydroxylase activity; INVOLVED IN: leaf shaping, response to brassinosteroid stimulus, leaf development, unidimensional cell growth, brassinosteroid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973); BEST Arabidopsis thaliana protein match is: CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT5G05690.1); Has 22150 Blast hits to 22103 proteins in 1226 species: Archae - 32; Bacteria - 3030; Metazoa - 9493; Fungi - 3641; Plants - 4766; Viruses - 3; Other Eukaryotes - 1185 (source: NCBI BLink).  protein_id AT3G50660.1p  transcript_id AT3G50660.1  protein_id AT3G50660.1p  transcript_id AT3G50660.1  
At3g50665	chr3:018826040	0.0	W/18826040-18826111	AT3G50665.1  tRNA  gene_syn 67272.TRNA-GLU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Glu (anticodon: TTC)  transcript_id AT3G50665.1  
At3g50670	chr3:018829394	0.0	C/18829394-18829492,18828974-18829088,18828824-18828903,18828658-18828733,18828506-18828570,18828232-18828411	AT3G50670.2  CDS  gene_syn U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K, U1 SNRNP 70K TRUNCATED PROTEIN, U1-70K, U1SNRNP, U1SNRNP-SPECIFIC PROTEIN  gene U1-70K  function Encodes U1 snRNP 70K  go_function nucleotide binding|GO:0000166||IEA  go_component nucleus|GO:0005634|15133128|IDA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|8776903|IDA  go_function RNA binding|GO:0003723||ISS  product U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K); RNA binding / nucleotide binding  note U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K (U1-70K); FUNCTIONS IN: RNA binding, nucleotide binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: U1 small nuclear ribonucleoprotein 70 kDa, putative (TAIR:AT2G43370.1); Has 363 Blast hits to 363 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 186; Fungi - 79; Plants - 51; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT3G50670.2p  transcript_id AT3G50670.2  protein_id AT3G50670.2p  transcript_id AT3G50670.2  
At3g50670	chr3:018829394	0.0	C/18829394-18829492,18828974-18829088,18828824-18828903,18828658-18828733,18828506-18828570,18828349-18828411,18827358-18827439,18827046-18827259,18826476-18826965	AT3G50670.1  CDS  gene_syn U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K, U1 SNRNP 70K TRUNCATED PROTEIN, U1-70K, U1SNRNP, U1SNRNP-SPECIFIC PROTEIN  gene U1-70K  function Encodes U1 snRNP 70K  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component nucleus|GO:0005634|15133128|IDA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|8776903|IDA  go_function RNA binding|GO:0003723||ISS  product U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K); RNA binding / nucleic acid binding / nucleotide binding  note U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K (U1-70K); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: U1 small nuclear ribonucleoprotein 70 kDa, putative (TAIR:AT2G43370.1); Has 48145 Blast hits to 26970 proteins in 1063 species: Archae - 42; Bacteria - 3162; Metazoa - 26718; Fungi - 5748; Plants - 3805; Viruses - 329; Other Eukaryotes - 8341 (source: NCBI BLink).  protein_id AT3G50670.1p  transcript_id AT3G50670.1  protein_id AT3G50670.1p  transcript_id AT3G50670.1  
At3g50674	chr3:018831163	0.0	W/18831163-18831244,18831407-18831507	AT3G50674.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G66790.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G50674.1p  transcript_id AT3G50674.1  protein_id AT3G50674.1p  transcript_id AT3G50674.1  
At3g50680	chr3:018833331	0.0	C/18833331-18833805	AT3G50680.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to putative reverse transcriptase  
At3g50682	chr3:018833968	0.0	C/18833968-18834096	AT3G50682.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G50682.1p  transcript_id AT3G50682.1  protein_id AT3G50682.1p  transcript_id AT3G50682.1  
At3g50685	chr3:018834272	0.0	C/18834272-18834748	AT3G50685.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G50685.1p  transcript_id AT3G50685.1  protein_id AT3G50685.1p  transcript_id AT3G50685.1  
At3g50690	chr3:018835991	0.0	C/18835991-18837097,18835271-18835507	AT3G50690.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 79321 Blast hits to 33428 proteins in 1262 species: Archae - 436; Bacteria - 8197; Metazoa - 29512; Fungi - 13019; Plants - 4257; Viruses - 1007; Other Eukaryotes - 22893 (source: NCBI BLink).  protein_id AT3G50690.1p  transcript_id AT3G50690.1  protein_id AT3G50690.1p  transcript_id AT3G50690.1  
At3g50695	chr3:018838994	0.0	C/18838994-18839131	AT3G50695.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G50695.1p  transcript_id AT3G50695.1  protein_id AT3G50695.1p  transcript_id AT3G50695.1  
At3g50700	chr3:018840945	0.0	W/18840945-18841074,18841152-18841548,18841632-18841831,18842198-18842829	AT3G50700.1  CDS  gene_syn Arabidopsis thaliana Indeterminate(ID)-Domain 2, AtIDD2  gene AtIDD2  function zinc finger protein, similar to maize Indeterminate1 (ID1)  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product AtIDD2 (Arabidopsis thaliana Indeterminate(ID)-Domain 2); nucleic acid binding / transcription factor/ zinc ion binding  note Arabidopsis thaliana Indeterminate(ID)-Domain 2 (AtIDD2); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT5G66730.1); Has 46579 Blast hits to 17142 proteins in 285 species: Archae - 0; Bacteria - 568; Metazoa - 42959; Fungi - 334; Plants - 432; Viruses - 2; Other Eukaryotes - 2284 (source: NCBI BLink).  protein_id AT3G50700.1p  transcript_id AT3G50700.1  protein_id AT3G50700.1p  transcript_id AT3G50700.1  
At3g50710	chr3:018845816	0.0	C/18845816-18846673,18845604-18845732,18845199-18845495	AT3G50710.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G56420.2); Has 1289 Blast hits to 1257 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1289; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G50710.1p  transcript_id AT3G50710.1  protein_id AT3G50710.1p  transcript_id AT3G50710.1  
At3g50720	chr3:018849234	0.0	C/18849234-18849430,18848692-18848827,18848372-18848567,18848154-18848275,18847924-18848079,18847519-18847845	AT3G50720.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine-protein kinase, ATN1-like (InterPro:IPR015784), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT3G50730.1); Has 89673 Blast hits to 88665 proteins in 3455 species: Archae - 72; Bacteria - 7748; Metazoa - 40256; Fungi - 7378; Plants - 18337; Viruses - 414; Other Eukaryotes - 15468 (source: NCBI BLink).  protein_id AT3G50720.1p  transcript_id AT3G50720.1  protein_id AT3G50720.1p  transcript_id AT3G50720.1  
At3g50730	chr3:018852977	0.0	C/18852977-18853137,18852741-18852876,18852413-18852605,18852205-18852326,18851973-18852131,18851533-18851874	AT3G50730.1  CDS  gene_syn F18B3.10  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine-protein kinase, ATN1-like (InterPro:IPR015784), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT3G50720.1); Has 90508 Blast hits to 89354 proteins in 3309 species: Archae - 68; Bacteria - 8199; Metazoa - 40392; Fungi - 7265; Plants - 18421; Viruses - 434; Other Eukaryotes - 15729 (source: NCBI BLink).  protein_id AT3G50730.1p  transcript_id AT3G50730.1  protein_id AT3G50730.1p  transcript_id AT3G50730.1  
At3g50740	chr3:018855348	0.0	C/18855348-18856811	AT3G50740.1  CDS  gene_syn F18B3.20, UDP-glucosyl transferase 72E1, UGT72E1  gene UGT72E1  function UGT72E1 is an UDPG:coniferyl alcohol glucosyltransferase which specifically glucosylates sinapyl- and coniferyl aldehydes. The enzyme is thought to be involved in lignin metabolism.  go_process lignin metabolic process|GO:0009808|15907484|TAS  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function coniferyl-alcohol glucosyltransferase activity|GO:0047209|15907484|IDA  product UGT72E1 (UDP-glucosyl transferase 72E1); UDP-glycosyltransferase/ coniferyl-alcohol glucosyltransferase/ transferase, transferring glycosyl groups  note UDP-glucosyl transferase 72E1 (UGT72E1); FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups, coniferyl-alcohol glucosyltransferase activity; INVOLVED IN: lignin metabolic process; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT72E2; UDP-glycosyltransferase/ coniferyl-alcohol glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT5G66690.1); Has 5085 Blast hits to 5064 proteins in 314 species: Archae - 0; Bacteria - 152; Metazoa - 2174; Fungi - 15; Plants - 2659; Viruses - 57; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT3G50740.1p  transcript_id AT3G50740.1  protein_id AT3G50740.1p  transcript_id AT3G50740.1  
At3g50750	chr3:018862823	0.0	C/18862823-18863062,18862147-18862737	AT3G50750.1  CDS  gene_syn F18B3.30  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  go_function transcription regulator activity|GO:0030528|11970900|TAS  product brassinosteroid signalling positive regulator-related  note brassinosteroid signalling positive regulator-related; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: BZR1, transcriptional repressor (InterPro:IPR008540); BEST Arabidopsis thaliana protein match is: BZR1 (BRASSINAZOLE-RESISTANT 1); DNA binding / transcription regulator/ transcription repressor (TAIR:AT1G75080.2); Has 1695 Blast hits to 222 proteins in 42 species: Archae - 0; Bacteria - 4; Metazoa - 14; Fungi - 22; Plants - 157; Viruses - 0; Other Eukaryotes - 1498 (source: NCBI BLink).  protein_id AT3G50750.1p  transcript_id AT3G50750.1  protein_id AT3G50750.1p  transcript_id AT3G50750.1  
At3g50751	chr3:018863690	0.0	W/18863690-18863869	AT3G50751.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G50751.1p  transcript_id AT3G50751.1  protein_id AT3G50751.1p  transcript_id AT3G50751.1  
At3g50755	chr3:018864775	0.0	W/18864775-18865254	AT3G50755.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 3.3e-35 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea)  
At3g50760	chr3:018868074	0.0	W/18868074-18869099	AT3G50760.1  CDS  gene_syn F18B3.40, GATL2, Galacturonosyltransferase-like 2  gene GATL2  function Encodes a protein with putative galacturonosyltransferase activity.  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS  product GATL2 (Galacturonosyltransferase-like 2); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note Galacturonosyltransferase-like 2 (GATL2); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: PARVUS (PARVUS); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT1G19300.1); Has 1045 Blast hits to 1039 proteins in 211 species: Archae - 0; Bacteria - 421; Metazoa - 130; Fungi - 0; Plants - 415; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT3G50760.1p  transcript_id AT3G50760.1  protein_id AT3G50760.1p  transcript_id AT3G50760.1  
At3g50764	chr3:018871491	0.0	C/18871491-18871631	AT3G50764.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G50764.1p  transcript_id AT3G50764.1  protein_id AT3G50764.1p  transcript_id AT3G50764.1  
At3g50770	chr3:018873987	0.0	W/18873987-18874604	AT3G50770.1  CDS  go_component chloroplast|GO:0009507||IEA  go_function calcium ion binding|GO:0005509||IEA  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calmodulin-related protein, putative  note calmodulin-related protein, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT1G76650.1); Has 14747 Blast hits to 8757 proteins in 1181 species: Archae - 0; Bacteria - 41; Metazoa - 5705; Fungi - 3717; Plants - 3127; Viruses - 0; Other Eukaryotes - 2157 (source: NCBI BLink).  protein_id AT3G50770.1p  transcript_id AT3G50770.1  protein_id AT3G50770.1p  transcript_id AT3G50770.1  
At3g50780	chr3:018876715	0.0	C/18876715-18877341,18875662-18876597	AT3G50780.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PRLI-interacting factor-related (TAIR:AT1G63850.1); Has 173 Blast hits to 173 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G50780.1p  transcript_id AT3G50780.1  protein_id AT3G50780.1p  transcript_id AT3G50780.1  
At3g50790	chr3:018881557	0.0	C/18881557-18881940,18881351-18881479,18881071-18881202,18880846-18880988,18880670-18880767,18880476-18880570,18880340-18880393,18880074-18880265	AT3G50790.1  CDS  go_function carboxylesterase activity|GO:0004091||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||ISS  go_function hydrolase activity|GO:0016787||ISS  product late embryogenesis abundant protein, putative / LEA protein, putative  note late embryogenesis abundant protein, putative / LEA protein, putative; FUNCTIONS IN: hydrolase activity, carboxylesterase activity; INVOLVED IN: embryonic development ending in seed dormancy; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0017, hydrolase-like, conserved site (InterPro:IPR000952), AB-hydrolase YheT, putative (InterPro:IPR012020), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: embryogenesis-associated protein-related (TAIR:AT5G49950.1); Has 1742 Blast hits to 1741 proteins in 599 species: Archae - 0; Bacteria - 910; Metazoa - 298; Fungi - 122; Plants - 62; Viruses - 0; Other Eukaryotes - 350 (source: NCBI BLink).  protein_id AT3G50790.1p  transcript_id AT3G50790.1  protein_id AT3G50790.1p  transcript_id AT3G50790.1  
At3g50800	chr3:018882444	0.0	C/18882444-18882902	AT3G50800.1  CDS  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66580.1); Has 126 Blast hits to 126 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 126; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G50800.1p  transcript_id AT3G50800.1  protein_id AT3G50800.1p  transcript_id AT3G50800.1  
At3g50808	chr3:018887859	0.0	C/18887859-18888047,18887614-18887757	AT3G50808.1  CDS  product unknown protein  note unknown protein.  protein_id AT3G50808.1p  transcript_id AT3G50808.1  protein_id AT3G50808.1p  transcript_id AT3G50808.1  
At3g50810	chr3:018889738	0.0	C/18889738-18889868,18889286-18889418,18889002-18889202	AT3G50810.1  CDS  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37235.1); Has 105 Blast hits to 105 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G50810.1p  transcript_id AT3G50810.1  protein_id AT3G50810.1p  transcript_id AT3G50810.1  
At3g50820	chr3:018892072	0.0	C/18892072-18892311,18891568-18891861,18891008-18891469	AT3G50820.1  CDS  gene_syn MSP-2, OEC33, OXYGEN EVOLVING COMPLEX SUBUNIT 33 KDA, PHOTOSYSTEM II SUBUNIT O-2, PSBO, PSBO-2, PSBO2  gene PSBO2  function Encodes a protein which is an extrinsic subunit of photosystem II and which has been proposed to play a central role in stabilization of the catalytic manganese cluster. In <i>Arabidopsis thaliana</i> the PsbO proteins are encoded by two genes: <i>psbO1</i> and <i>psbO2</i>. PsbO2 is the minor isoform in the wild-type. Mutants defective in this gene have been shown to be affected in the dephosphorylation of the D1 protein of PSII.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  go_component thylakoid|GO:0009579|15722336|IEP  go_component oxygen evolving complex|GO:0009654||ISS  go_component plastoglobule|GO:0010287|16414959|IDA  go_component plastoglobule|GO:0010287|16461379|IDA  go_component chloroplast photosystem II|GO:0030095||ISS  go_process photoinhibition|GO:0010205|17217465|IMP  go_process photosystem II assembly|GO:0010207|15722336|IMP  go_process photosynthesis, light reaction|GO:0019684|12123820|ISS  go_process regulation of protein amino acid dephosphorylation|GO:0035304|17217465|IMP  go_process photosystem II stabilization|GO:0042549|15722336|IMP  go_function poly(U) binding|GO:0008266|17511964|IDA  go_function oxygen evolving activity|GO:0010242|12123820|ISS  product PSBO2 (PHOTOSYSTEM II SUBUNIT O-2); oxygen evolving/ poly(U) binding  note PHOTOSYSTEM II SUBUNIT O-2 (PSBO2); FUNCTIONS IN: oxygen evolving activity, poly(U) binding; INVOLVED IN: photosystem II stabilization, photosystem II assembly, photoinhibition, photosynthesis, light reaction, regulation of protein amino acid dephosphorylation; LOCATED IN: in 9 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II manganese-stabilizing protein PsbO (InterPro:IPR002628); BEST Arabidopsis thaliana protein match is: PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1); oxygen evolving/ poly(U) binding (TAIR:AT5G66570.1); Has 456 Blast hits to 454 proteins in 123 species: Archae - 0; Bacteria - 117; Metazoa - 1; Fungi - 0; Plants - 161; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).  protein_id AT3G50820.1p  transcript_id AT3G50820.1  protein_id AT3G50820.1p  transcript_id AT3G50820.1  
At3g50825	chr3:018893404	0.0	C/18893404-18893484	AT3G50825.1  snoRNA  gene_syn 67273.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT3G50825.1  
At3g50830	chr3:018895177	0.0	C/18895177-18895355,18894715-18894822,18894547-18894617,18894109-18894362	AT3G50830.1  CDS  gene_syn ATCOR413-PM2, COLD-REGULATED 413-PLASMA MEMBRANE 2, COR413-PM2  gene COR413-PM2  function cold acclimation protein WCOR413-like protein beta form. Transcript is not detectable.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|12746512|ISS  go_process response to stress|GO:0006950|12746512|IEP  go_function molecular_function|GO:0003674||ND  product COR413-PM2 (COLD-REGULATED 413-PLASMA MEMBRANE 2)  note COLD-REGULATED 413-PLASMA MEMBRANE 2 (COR413-PM2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cold acclimation WCOR413 (InterPro:IPR008892); BEST Arabidopsis thaliana protein match is: stress-responsive protein, putative (TAIR:AT4G37220.1); Has 97 Blast hits to 96 proteins in 25 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G50830.1p  transcript_id AT3G50830.1  protein_id AT3G50830.1p  transcript_id AT3G50830.1  
At3g50835	chr3:018896871	0.0	W/18896871-18896943	AT3G50835.1  tRNA  gene_syn 67273.TRNA-VAL-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Val (anticodon: TAC)  transcript_id AT3G50835.1  
At3g50840	chr3:018898349	0.0	C/18898349-18898374,18898193-18898265,18896982-18898106,18896353-18896838	AT3G50840.1  CDS  go_process response to light stimulus|GO:0009416||IEA  go_function signal transducer activity|GO:0004871||IEA  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process response to light stimulus|GO:0009416||ISS  go_function signal transducer activity|GO:0004871||ISS  product phototropic-responsive NPH3 family protein  note phototropic-responsive NPH3 family protein; FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: phototropic-responsive NPH3 family protein (TAIR:AT5G66560.1); Has 439 Blast hits to 427 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 3; Plants - 430; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G50840.1p  transcript_id AT3G50840.1  protein_id AT3G50840.1p  transcript_id AT3G50840.1  
At3g50845	chr3:018901096	0.0	C/18901096-18901209,18900895-18900998,18900629-18900728,18900475-18900520,18900107-18900207	AT3G50845.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF59 (InterPro:IPR002744); BEST Arabidopsis thaliana protein match is: vacuolar sorting signal binding (TAIR:AT1G68310.2); Has 415 Blast hits to 414 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 216; Fungi - 86; Plants - 41; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT3G50845.1p  transcript_id AT3G50845.1  protein_id AT3G50845.1p  transcript_id AT3G50845.1  
At3g50850	chr3:018901389	0.0	C/18901389-18902144	AT3G50850.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49560.1); Has 842 Blast hits to 842 proteins in 139 species: Archae - 0; Bacteria - 14; Metazoa - 344; Fungi - 278; Plants - 140; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT3G50850.1p  transcript_id AT3G50850.1  protein_id AT3G50850.1p  transcript_id AT3G50850.1  
At3g50860	chr3:018902346	0.0	W/18902346-18902414,18902517-18902559,18902683-18902744,18902842-18902938,18903482-18903552,18903711-18903802,18903893-18903959	AT3G50860.1  CDS  go_component membrane coat|GO:0030117||IEA  go_process transport|GO:0006810||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process protein transport|GO:0015031||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function protein binding|GO:0005515||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component clathrin vesicle coat|GO:0030125||ISS  go_process intracellular protein transport|GO:0006886||ISS  product clathrin adaptor complex small chain family protein  note clathrin adaptor complex small chain family protein; FUNCTIONS IN: protein transporter activity, protein binding; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport, protein transport; LOCATED IN: membrane coat, clathrin vesicle coat; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adaptor protein complex, sigma subunit (InterPro:IPR016635), Clathrin adaptor, sigma subunit/coatomer, zeta subunit (InterPro:IPR000804), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: clathrin adaptor complex small chain family protein (TAIR:AT2G19790.1); Has 1471 Blast hits to 1469 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 751; Fungi - 281; Plants - 166; Viruses - 0; Other Eukaryotes - 273 (source: NCBI BLink).  protein_id AT3G50860.1p  transcript_id AT3G50860.1  protein_id AT3G50860.1p  transcript_id AT3G50860.1  
At3g50870	chr3:018911112	0.0	W/18911112-18911630,18912001-18912369	AT3G50870.1  CDS  gene_syn MNP, MONOPOLE  gene MNP  function mutant has Embryo defect; GATA Factor Transcriptional Regulator  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product MNP (MONOPOLE); transcription factor  note MONOPOLE (MNP); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: zinc finger (GATA type) family protein (TAIR:AT4G36620.1); Has 1434 Blast hits to 1364 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 336; Fungi - 600; Plants - 409; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT3G50870.1p  transcript_id AT3G50870.1  protein_id AT3G50870.1p  transcript_id AT3G50870.1  
At3g50880	chr3:018913509	0.0	W/18913509-18914330	AT3G50880.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process DNA repair|GO:0006281||IEA  go_process base-excision repair|GO:0006284||IEA  go_function catalytic activity|GO:0003824||IEA  go_process base-excision repair|GO:0006284||ISS  product HhH-GPD base excision DNA repair family protein  note HhH-GPD base excision DNA repair family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: HhH-GPD base excision DNA repair family protein (TAIR:AT1G19480.2); Has 3297 Blast hits to 3297 proteins in 551 species: Archae - 37; Bacteria - 1149; Metazoa - 0; Fungi - 92; Plants - 45; Viruses - 0; Other Eukaryotes - 1974 (source: NCBI BLink).  protein_id AT3G50880.1p  transcript_id AT3G50880.1  protein_id AT3G50880.1p  transcript_id AT3G50880.1  
At3g50890	chr3:018916420	0.0	W/18916420-18917169	AT3G50890.1  CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 28, AtHB28  gene AtHB28  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677|16428600|ISS  go_function transcription factor activity|GO:0003700||ISS  product AtHB28 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 28); DNA binding / transcription factor  note ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 28 (AtHB28); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein Cys/His-rich dimerisation region (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: AtHB24 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 24); DNA binding / transcription factor (TAIR:AT2G18350.1); Has 258 Blast hits to 249 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 258; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G50890.1p  transcript_id AT3G50890.1  protein_id AT3G50890.1p  transcript_id AT3G50890.1  
At3g50895	chr3:018917433	0.0	W/18917433-18917506	AT3G50895.1  tRNA  gene_syn 67273.TRNA-ASN-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asn (anticodon: GTT)  transcript_id AT3G50895.1  
At3g50900	chr3:018918122	0.0	W/18918122-18918466	AT3G50900.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66490.1); Has 21 Blast hits to 21 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G50900.1p  transcript_id AT3G50900.1  protein_id AT3G50900.1p  transcript_id AT3G50900.1  
At3g50910	chr3:018920189	0.0	W/18920189-18920954,18921330-18921752,18921845-18921999	AT3G50910.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66480.1); Has 38 Blast hits to 37 proteins in 15 species: Archae - 0; Bacteria - 5; Metazoa - 6; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT3G50910.1p  transcript_id AT3G50910.1  protein_id AT3G50910.1p  transcript_id AT3G50910.1  
At3g50920	chr3:018923222	0.0	C/18923222-18923380,18922892-18923117,18922733-18922806,18922403-18922630	AT3G50920.2  CDS  go_component membrane|GO:0016020||IEA  go_function catalytic activity|GO:0003824||IEA  go_process biological_process|GO:0008150||ND  product phosphatidic acid phosphatase-related / PAP2-related  note phosphatidic acid phosphatase-related / PAP2-related; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: phosphatidic acid phosphatase-related / PAP2-related (TAIR:AT5G66450.2); Has 226 Blast hits to 226 proteins in 101 species: Archae - 0; Bacteria - 16; Metazoa - 73; Fungi - 69; Plants - 40; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT3G50920.2p  transcript_id AT3G50920.2  protein_id AT3G50920.2p  transcript_id AT3G50920.2  
At3g50920	chr3:018923222	0.0	C/18923222-18923533,18922892-18923117,18922733-18922806,18922403-18922630	AT3G50920.1  CDS  go_component chloroplast|GO:0009507||IEA  go_component membrane|GO:0016020||IEA  go_function catalytic activity|GO:0003824||IEA  go_process biological_process|GO:0008150||ND  product phosphatidic acid phosphatase-related / PAP2-related  note phosphatidic acid phosphatase-related / PAP2-related; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: phosphatidic acid phosphatase-related / PAP2-related (TAIR:AT5G66450.1); Has 226 Blast hits to 226 proteins in 101 species: Archae - 0; Bacteria - 16; Metazoa - 73; Fungi - 69; Plants - 40; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT3G50920.1p  transcript_id AT3G50920.1  protein_id AT3G50920.1p  transcript_id AT3G50920.1  
At3g50925	chr3:018926014	0.0	C/18926014-18926083,18925658-18925860	AT3G50925.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G50925.1p  transcript_id AT3G50925.1  protein_id AT3G50925.1p  transcript_id AT3G50925.1  
At3g50930	chr3:018929817	0.0	W/18929817-18931547	AT3G50930.1  CDS  gene_syn BCS1, CYTOCHROME BC1 SYNTHESIS  gene BCS1  go_component mitochondrion|GO:0005739|15276431|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_function ATP binding|GO:0005524||ISS  go_function ATPase activity|GO:0016887||ISS  product BCS1 (CYTOCHROME BC1 SYNTHESIS); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding  note CYTOCHROME BC1 SYNTHESIS (BCS1); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT3G50940.1); Has 14639 Blast hits to 13488 proteins in 1548 species: Archae - 792; Bacteria - 3998; Metazoa - 3028; Fungi - 1834; Plants - 1282; Viruses - 24; Other Eukaryotes - 3681 (source: NCBI BLink).  protein_id AT3G50930.1p  transcript_id AT3G50930.1  protein_id AT3G50930.1p  transcript_id AT3G50930.1  
At3g50940	chr3:018934086	0.0	W/18934086-18935072,18935160-18935528	AT3G50940.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATP binding|GO:0005524||ISS  go_function ATPase activity|GO:0016887||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: BCS1 (CYTOCHROME BC1 SYNTHESIS); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (TAIR:AT3G50930.1); Has 15101 Blast hits to 13958 proteins in 1624 species: Archae - 770; Bacteria - 4132; Metazoa - 3106; Fungi - 1896; Plants - 1365; Viruses - 28; Other Eukaryotes - 3804 (source: NCBI BLink).  protein_id AT3G50940.1p  transcript_id AT3G50940.1  protein_id AT3G50940.1p  transcript_id AT3G50940.1  
At3g50950	chr3:018936127	0.0	W/18936127-18938685	AT3G50950.1  CDS  go_process apoptosis|GO:0006915||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative  note disease resistance protein (CC-NBS-LRR class), putative; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182); BEST Arabidopsis thaliana protein match is: RPP8 (RECOGNITION OF PERONOSPORA PARASITICA 8); nucleotide binding (TAIR:AT5G43470.2); Has 10683 Blast hits to 9585 proteins in 351 species: Archae - 2; Bacteria - 172; Metazoa - 185; Fungi - 106; Plants - 10108; Viruses - 8; Other Eukaryotes - 102 (source: NCBI BLink).  protein_id AT3G50950.1p  transcript_id AT3G50950.1  protein_id AT3G50950.1p  transcript_id AT3G50950.1  
At3g50950	chr3:018936127	0.0	W/18936127-18938685	AT3G50950.2  CDS  go_process apoptosis|GO:0006915||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative  note disease resistance protein (CC-NBS-LRR class), putative; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182); BEST Arabidopsis thaliana protein match is: RPP8 (RECOGNITION OF PERONOSPORA PARASITICA 8); nucleotide binding (TAIR:AT5G43470.2); Has 10683 Blast hits to 9585 proteins in 351 species: Archae - 2; Bacteria - 172; Metazoa - 185; Fungi - 106; Plants - 10108; Viruses - 8; Other Eukaryotes - 102 (source: NCBI BLink).  protein_id AT3G50950.2p  transcript_id AT3G50950.2  protein_id AT3G50950.2p  transcript_id AT3G50950.2  
At3g50960	chr3:018940143	0.0	C/18940143-18940226,18939932-18940006,18939810-18939857,18939582-18939724,18939423-18939495,18939270-18939331,18939086-18939183,18938891-18939000	AT3G50960.1  CDS  gene_syn PLP3a, Phosducin-like protein 3 homolog  gene PLP3a  function Encodes a protein that functions in microtubule assembly. PLP3a can bind to several different tubulin family members in Y2H assays. Plants with reduced levels of both PLP3a and PLP3b (At5g66410) show defects in cytokinesis, cortical microtubule array formation, oriented cell growth, and maintenance of proper ploidy.  go_component nucleus|GO:0005634|18390592|IDA  go_component cytoplasm|GO:0005737|18390592|IDA  go_process nuclear division|GO:0000280|18390592|IGI  go_process cytokinesis|GO:0000910|18390592|IGI  go_process nucleolus organization|GO:0007000|18390592|IGI  go_process cortical microtubule organization|GO:0043622|18390592|IGI  go_process anisotropic cell growth|GO:0051211|18390592|IGI  go_function beta-tubulin binding|GO:0048487|18390592|IPI  product PLP3a (Phosducin-like protein 3 homolog); beta-tubulin binding  note Phosducin-like protein 3 homolog (PLP3a); FUNCTIONS IN: beta-tubulin binding; INVOLVED IN: cortical microtubule organization, nucleolus organization, nuclear division, anisotropic cell growth, cytokinesis; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: PLP3b (Phosducin-like protein 3 homolog); beta-tubulin binding (TAIR:AT5G66410.1); Has 689 Blast hits to 685 proteins in 164 species: Archae - 4; Bacteria - 39; Metazoa - 318; Fungi - 99; Plants - 90; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).  protein_id AT3G50960.1p  transcript_id AT3G50960.1  protein_id AT3G50960.1p  transcript_id AT3G50960.1  
At3g50970	chr3:018940825	0.0	W/18940825-18941406	AT3G50970.1  CDS  gene_syn LOW TEMPERATURE-INDUCED 30, LTI30, XERO2  gene LTI30  function Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer freeze tolerance. Located in membranes. mRNA upregulated by water deprivation and abscisic acid.  go_component membrane|GO:0016020|15356392|IDA  go_process response to stress|GO:0006950||ISS  go_process response to cold|GO:0009409|11292073|IEP  go_process response to water deprivation|GO:0009414|7948863|IEP  go_process response to water|GO:0009415||ISS  go_process cold acclimation|GO:0009631|15356392|IGI  go_process response to abscisic acid stimulus|GO:0009737|11292073|IEP  go_function molecular_function|GO:0003674||ND  product LTI30 (LOW TEMPERATURE-INDUCED 30)  note LOW TEMPERATURE-INDUCED 30 (LTI30); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 6 processes; LOCATED IN: membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: COR47 (COLD-REGULATED 47) (TAIR:AT1G20440.1); Has 2237 Blast hits to 892 proteins in 131 species: Archae - 0; Bacteria - 4; Metazoa - 62; Fungi - 5; Plants - 2155; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT3G50970.1p  transcript_id AT3G50970.1  protein_id AT3G50970.1p  transcript_id AT3G50970.1  
At3g50980	chr3:018942034	0.0	W/18942034-18942216,18942518-18942721	AT3G50980.1  CDS  gene_syn DEHYDRIN XERO 1, XERO1  gene XERO1  go_process response to stress|GO:0006950||IEA  go_process response to water|GO:0009415||IEA  go_component cellular_component|GO:0005575||ND  go_process response to stress|GO:0006950||ISS  go_process response to water|GO:0009415||ISS  go_function molecular_function|GO:0003674||ND  product XERO1 (DEHYDRIN XERO 1)  note DEHYDRIN XERO 1 (XERO1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to water, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, leaf whorl, petal, inflorescence meristem, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); Has 1358 Blast hits to 936 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1357; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G50980.1p  transcript_id AT3G50980.1  protein_id AT3G50980.1p  transcript_id AT3G50980.1  
At3g50990	chr3:018943155	0.0	W/18943155-18943412,18943508-18943699,18943780-18943945,18944187-18944605	AT3G50990.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product electron carrier/ heme binding / peroxidase  note electron carrier/ heme binding / peroxidase; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase 72 (PER72) (P72) (PRXR8) (TAIR:AT5G66390.1); Has 2976 Blast hits to 2961 proteins in 221 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 185; Plants - 2751; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT3G50990.1p  transcript_id AT3G50990.1  protein_id AT3G50990.1p  transcript_id AT3G50990.1  
At3g51000	chr3:018946209	0.0	C/18946209-18946499,18945942-18946121,18945600-18945841,18945258-18945516	AT3G51000.1  CDS  go_function catalytic activity|GO:0003824||IEA  go_function epoxide hydrolase activity|GO:0004301||ISS  product epoxide hydrolase, putative  note epoxide hydrolase, putative; FUNCTIONS IN: epoxide hydrolase activity, catalytic activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: epoxide hydrolase, putative (TAIR:AT3G05600.1); Has 12966 Blast hits to 12935 proteins in 1112 species: Archae - 43; Bacteria - 8093; Metazoa - 667; Fungi - 360; Plants - 323; Viruses - 5; Other Eukaryotes - 3475 (source: NCBI BLink).  protein_id AT3G51000.1p  transcript_id AT3G51000.1  protein_id AT3G51000.1p  transcript_id AT3G51000.1  
At3g51010	chr3:018947772	0.0	C/18947772-18948048,18947330-18947451,18946880-18947047	AT3G51010.1  CDS  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 13 Blast hits to 13 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G51010.1p  transcript_id AT3G51010.1  protein_id AT3G51010.1p  transcript_id AT3G51010.1  
At3g51020	chr3:018949645	0.0	W/18949645-18949677,18949769-18949844,18949929-18950221	AT3G51020.1  CDS  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66370.1); Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G51020.1p  transcript_id AT3G51020.1  protein_id AT3G51020.1p  transcript_id AT3G51020.1  
At3g51030	chr3:018951866	0.0	C/18951866-18951955,18951339-18951461,18951123-18951254	AT3G51030.1  CDS  gene_syn ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, ATTRX H1, ATTRX1, THIOREDOXIN  gene ATTRX1  function encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells.  go_process cell redox homeostasis|GO:0045454||IEA  go_component cytosol|GO:0005829|7777559|TAS  go_function oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor|GO:0016671|7777559|IDA  product ATTRX1; oxidoreductase, acting on sulfur group of donors, disulfide as acceptor  note ATTRX1; FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: cell redox homeostasis; LOCATED IN: cytosol; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATTRX5; oxidoreductase, acting on sulfur group of donors, disulfide as acceptor (TAIR:AT1G45145.1); Has 11761 Blast hits to 11521 proteins in 1699 species: Archae - 139; Bacteria - 5211; Metazoa - 1641; Fungi - 624; Plants - 1203; Viruses - 3; Other Eukaryotes - 2940 (source: NCBI BLink).  protein_id AT3G51030.1p  transcript_id AT3G51030.1  protein_id AT3G51030.1p  transcript_id AT3G51030.1  
At3g51040	chr3:018952794	0.0	C/18952794-18953060,18952281-18952709	AT3G51040.1  CDS  gene_syn RTE1-HOMOLOG, RTH  gene RTH  function Encodes a protein of 231 amino acids with 51% identity to RTE1 over 209 amino acids.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product RTH (RTE1-HOMOLOG)  note RTE1-HOMOLOG (RTH); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF778 (InterPro:IPR008496); BEST Arabidopsis thaliana protein match is: RTE1 (REVERSION-TO-ETHYLENE SENSITIVITY1) (TAIR:AT2G26070.1); Has 210 Blast hits to 210 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT3G51040.1p  transcript_id AT3G51040.1  protein_id AT3G51040.1p  transcript_id AT3G51040.1  
At3g51040	chr3:018952794	0.0	C/18952794-18953060,18952281-18952709	AT3G51040.2  CDS  gene_syn RTE1-HOMOLOG, RTH  gene RTH  function Encodes a protein of 231 amino acids with 51% identity to RTE1 over 209 amino acids.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product RTH (RTE1-HOMOLOG)  note RTE1-HOMOLOG (RTH); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF778 (InterPro:IPR008496); BEST Arabidopsis thaliana protein match is: RTE1 (REVERSION-TO-ETHYLENE SENSITIVITY1) (TAIR:AT2G26070.1); Has 210 Blast hits to 210 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT3G51040.2p  transcript_id AT3G51040.2  protein_id AT3G51040.2p  transcript_id AT3G51040.2  
At3g51040	chr3:018952794	0.0	C/18952794-18953060,18952281-18952709	AT3G51040.3  CDS  gene_syn RTE1-HOMOLOG, RTH  gene RTH  function Encodes a protein of 231 amino acids with 51% identity to RTE1 over 209 amino acids.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product RTH (RTE1-HOMOLOG)  note RTE1-HOMOLOG (RTH); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF778 (InterPro:IPR008496); BEST Arabidopsis thaliana protein match is: RTE1 (REVERSION-TO-ETHYLENE SENSITIVITY1) (TAIR:AT2G26070.1); Has 210 Blast hits to 210 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT3G51040.3p  transcript_id AT3G51040.3  protein_id AT3G51040.3p  transcript_id AT3G51040.3  
At3g51050	chr3:018954023	0.0	W/18954023-18954085,18954342-18954500,18954771-18955022,18955126-18955245,18955326-18955406,18955590-18955685,18955802-18955897,18956013-18956066,18956153-18956359,18956442-18956567,18956668-18956733,18956828-18957130,18957225-18957698	AT3G51050.1  CDS  go_component plasma membrane|GO:0005886|17151019|IDA  go_component integrin complex|GO:0008305||ISS  go_component integral to membrane|GO:0016021||ISS  go_process cell-matrix adhesion|GO:0007160||ISS  go_function molecular_function|GO:0003674||ND  product FG-GAP repeat-containing protein  note FG-GAP repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell-matrix adhesion; LOCATED IN: integrin complex, integral to membrane, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FG-GAP (InterPro:IPR013517); Has 68 Blast hits to 63 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT3G51050.1p  transcript_id AT3G51050.1  protein_id AT3G51050.1p  transcript_id AT3G51050.1  
At3g51057	chr3:018962793	0.0	C/18962793-18962897	AT3G51057.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G51057.1p  transcript_id AT3G51057.1  protein_id AT3G51057.1p  transcript_id AT3G51057.1  
At3g51060	chr3:018964606	0.0	W/18964606-18965299,18965712-18966130	AT3G51060.1  CDS  gene_syn SHI RELATED SEQUENCE 1, SRS1, STY1, STYLISH 1  gene STY1  function A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. STY1/STY2 double mutants showed defective style, stigma as well as serrated leaves.  go_component nucleus|GO:0005634|12361963|ISS  go_process negative regulation of gibberellic acid mediated signaling|GO:0009938||NAS  go_process xylem and phloem pattern formation|GO:0010051|12361963|IGI  go_process auxin homeostasis|GO:0010252|16740145|IGI  go_process style development|GO:0048479|12361963|IGI  go_process stigma development|GO:0048480|12361963|IGI  go_function transcription factor activity|GO:0003700||NAS  go_function protein heterodimerization activity|GO:0046982|16740146|IPI  product STY1 (STYLISH 1); protein heterodimerization/ transcription factor  note STYLISH 1 (STY1); FUNCTIONS IN: transcription factor activity, protein heterodimerization activity; INVOLVED IN: auxin homeostasis, style development, xylem and phloem pattern formation, negative regulation of gibberellic acid mediated signaling, stigma development; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Protein of unknown function DUF702 (InterPro:IPR007818), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510); BEST Arabidopsis thaliana protein match is: SHI (SHORT INTERNODES); protein binding / protein heterodimerization/ transcription factor (TAIR:AT5G66350.1); Has 127 Blast hits to 127 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 30; Fungi - 9; Plants - 81; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT3G51060.1p  transcript_id AT3G51060.1  protein_id AT3G51060.1p  transcript_id AT3G51060.1  
At3g51075	chr3:018968743	0.0	C/18968743-18972285	AT3G51075.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT3G51070  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G51075.1  
At3g51070	chr3:018969068	0.0	W/18969068-18970372,18970462-18970611,18970715-18971096,18971187-18971361,18971452-18971724,18971807-18972001,18972084-18972291	AT3G51070.1  CDS  go_process biological_process|GO:0008150||ND  product dehydration-responsive protein-related  note dehydration-responsive protein-related; INVOLVED IN: biological_process unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive protein-related (TAIR:AT5G64030.1); Has 119504 Blast hits to 53409 proteins in 1835 species: Archae - 218; Bacteria - 12704; Metazoa - 48744; Fungi - 10450; Plants - 4324; Viruses - 777; Other Eukaryotes - 42287 (source: NCBI BLink).  protein_id AT3G51070.1p  transcript_id AT3G51070.1  protein_id AT3G51070.1p  transcript_id AT3G51070.1  
At3g51080	chr3:018973639	0.0	W/18973639-18973896,18973988-18974668	AT3G51080.1  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product zinc finger (GATA type) family protein  note zinc finger (GATA type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: zinc finger (GATA type) family protein (TAIR:AT5G66320.2); Has 917 Blast hits to 901 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 362; Plants - 408; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT3G51080.1p  transcript_id AT3G51080.1  protein_id AT3G51080.1p  transcript_id AT3G51080.1  
At3g51090	chr3:018979470	0.0	C/18979470-18979853,18979050-18979181,18978890-18978949,18978686-18978762,18978550-18978606,18978400-18978466,18978192-18978311	AT3G51090.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1640 (InterPro:IPR012439); BEST Arabidopsis thaliana protein match is: metal ion binding (TAIR:AT2G16460.1); Has 369 Blast hits to 367 proteins in 118 species: Archae - 2; Bacteria - 7; Metazoa - 171; Fungi - 104; Plants - 48; Viruses - 2; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT3G51090.1p  transcript_id AT3G51090.1  protein_id AT3G51090.1p  transcript_id AT3G51090.1  
At3g51100	chr3:018981994	0.0	C/18981994-18982174,18981479-18981618,18981110-18981179,18980925-18981018,18980531-18980651	AT3G51100.3  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 32 Blast hits to 32 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G51100.3p  transcript_id AT3G51100.3  protein_id AT3G51100.3p  transcript_id AT3G51100.3  
At3g51100	chr3:018981994	0.0	C/18981994-18982174,18981479-18981648,18981110-18981179,18980921-18981018	AT3G51100.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 28 Blast hits to 28 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G51100.2p  transcript_id AT3G51100.2  protein_id AT3G51100.2p  transcript_id AT3G51100.2  
At3g51100	chr3:018981994	0.0	C/18981994-18982174,18981479-18981648,18981110-18981179,18980925-18981018,18980531-18980651	AT3G51100.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30 Blast hits to 30 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G51100.1p  transcript_id AT3G51100.1  protein_id AT3G51100.1p  transcript_id AT3G51100.1  
At3g51110	chr3:018983711	0.0	W/18983711-18984952	AT3G51110.1  CDS  go_component intracellular|GO:0005622||IEA  go_process RNA processing|GO:0006396||IEA  go_function binding|GO:0005488||IEA  go_component intracellular|GO:0005622||ISS  go_process RNA processing|GO:0006396||ISS  product crooked neck protein, putative / cell cycle protein, putative  note crooked neck protein, putative / cell cycle protein, putative; FUNCTIONS IN: binding; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: crooked neck protein, putative / cell cycle protein, putative (TAIR:AT5G41770.1); Has 3183 Blast hits to 1420 proteins in 170 species: Archae - 2; Bacteria - 8; Metazoa - 1451; Fungi - 897; Plants - 412; Viruses - 0; Other Eukaryotes - 413 (source: NCBI BLink).  protein_id AT3G51110.1p  transcript_id AT3G51110.1  protein_id AT3G51110.1p  transcript_id AT3G51110.1  
At3g51120	chr3:018991504	0.0	C/18991504-18991886,18991101-18991180,18990769-18990956,18989323-18990196,18989080-18989207,18988868-18988927,18988734-18988784,18988575-18988623,18988148-18988282,18987869-18988041,18986026-18987783	AT3G51120.1  CDS  go_component nucleus|GO:0005634||IEA  go_process transcription initiation|GO:0006352||IEA  go_process histone modification|GO:0016570||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function nucleic acid binding|GO:0003676||ISS  product DNA binding / nucleic acid binding / protein binding / zinc ion binding  note DNA binding / nucleic acid binding / protein binding / zinc ion binding; FUNCTIONS IN: protein binding, DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: histone modification, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Plus-3 domain, subgroup (InterPro:IPR018144), Zinc finger, PHD-type (InterPro:IPR001965), GYF (InterPro:IPR003169), SWIB/MDM2 (InterPro:IPR003121), Plus-3 (InterPro:IPR004343), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: DNA binding / nucleic acid binding / protein binding / zinc ion binding (TAIR:AT2G16485.1); Has 1774 Blast hits to 1307 proteins in 196 species: Archae - 0; Bacteria - 211; Metazoa - 777; Fungi - 160; Plants - 235; Viruses - 18; Other Eukaryotes - 373 (source: NCBI BLink).  protein_id AT3G51120.1p  transcript_id AT3G51120.1  protein_id AT3G51120.1p  transcript_id AT3G51120.1  
At3g51130	chr3:018994219	0.0	W/18994219-18994348,18994658-18994740,18994836-18994910,18995096-18995163,18995243-18995348,18995438-18995498,18995593-18995759,18995881-18995943,18996016-18996063,18996215-18996328,18996404-18996494,18996598-18996671,18996926-18997030,18997133-18997180	AT3G51130.1  CDS  go_component cellular_component|GO:0005575||ND  go_process response to salt stress|GO:0009651|11351099|IEP  product unknown protein  note unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0183 (InterPro:IPR005373); Has 201 Blast hits to 198 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 114; Fungi - 55; Plants - 18; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT3G51130.1p  transcript_id AT3G51130.1  protein_id AT3G51130.1p  transcript_id AT3G51130.1  
At3g51135	chr3:018997643	0.0	C/18997643-18997715	AT3G51135.1  tRNA  gene_syn 67274.TRNA-GLU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Glu (anticodon: CTC)  transcript_id AT3G51135.1  
At3g51140	chr3:018998182	0.0	W/18998182-18998330,18998420-18998511,18998759-18999203,18999287-18999437	AT3G51140.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast inner membrane|GO:0009706|12766230|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: CDF1 (CELL GROWTH DEFECT FACTOR 1) (TAIR:AT5G23040.1); Has 133 Blast hits to 133 proteins in 42 species: Archae - 0; Bacteria - 60; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT3G51140.1p  transcript_id AT3G51140.1  protein_id AT3G51140.1p  transcript_id AT3G51140.1  
At3g51150	chr3:019002006	0.0	W/19002006-19002210,19002291-19002380,19002459-19002559,19002661-19002774,19002849-19002930,19003015-19003082,19003173-19003238,19003322-19003446,19003696-19004032,19004252-19004386,19004474-19004690,19004772-19005661,19005774-19006093,19006182-19006509	AT3G51150.1  CDS  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product kinesin motor family protein  note kinesin motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin motor family protein (TAIR:AT5G66310.1); Has 8122 Blast hits to 7748 proteins in 301 species: Archae - 0; Bacteria - 56; Metazoa - 4158; Fungi - 909; Plants - 934; Viruses - 3; Other Eukaryotes - 2062 (source: NCBI BLink).  protein_id AT3G51150.1p  transcript_id AT3G51150.1  protein_id AT3G51150.1p  transcript_id AT3G51150.1  
At3g51160	chr3:019007232	0.0	C/19007232-19008353	AT3G51160.1  CDS  gene_syn GDP-D-MANNOSE-4,6-DEHYDRATASE, GDP-D-MANNOSE-4,6-DEHYDRATASE 2, GMD2, MUR1, MURUS 1, MUR_1  gene MUR1  function Catalyzes the first step in the de novo synthesis of GDP-L-fucose.  go_component cytosol|GO:0005829|18433157|IDA  go_process unidimensional cell growth|GO:0009826|12366804|IMP  go_process  de novo  GDP-L-fucose biosynthetic process|GO:0042351|9050909|IMP  go_function GDP-mannose 4,6-dehydratase activity|GO:0008446|9050909|IDA  go_function GDP-mannose 4,6-dehydratase activity|GO:0008446|9050909|ISS  product MUR1 (MURUS 1); GDP-mannose 4,6-dehydratase  note MURUS 1 (MUR1); FUNCTIONS IN: GDP-mannose 4,6-dehydratase activity; INVOLVED IN:  de novo  GDP-L-fucose biosynthetic process, unidimensional cell growth; LOCATED IN: cytosol; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040), GDP-mannose 4,6-dehydratase (InterPro:IPR006368); BEST Arabidopsis thaliana protein match is: GMD1 (GDP-D-MANNOSE 4,6-DEHYDRATASE 1); GDP-mannose 4,6-dehydratase/ binding / catalytic/ coenzyme binding (TAIR:AT5G66280.1); Has 16982 Blast hits to 16978 proteins in 1526 species: Archae - 353; Bacteria - 7783; Metazoa - 341; Fungi - 87; Plants - 313; Viruses - 24; Other Eukaryotes - 8081 (source: NCBI BLink).  protein_id AT3G51160.1p  transcript_id AT3G51160.1  protein_id AT3G51160.1p  transcript_id AT3G51160.1  
At3g51171	chr3:019010856	0.0	W/19010856-19011626	AT3G51171.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G16555.1); Has 537 Blast hits to 535 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 537; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G51171.1p  transcript_id AT3G51171.1  protein_id AT3G51171.1p  transcript_id AT3G51171.1  
At3g51180	chr3:019013720	0.0	W/19013720-19013785,19014367-19014549,19014643-19014767,19014851-19016042	AT3G51180.1  CDS  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc finger (CCCH-type) family protein  note zinc finger (CCCH-type) family protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein (TAIR:AT5G66270.1); Has 323 Blast hits to 284 proteins in 94 species: Archae - 0; Bacteria - 43; Metazoa - 103; Fungi - 53; Plants - 78; Viruses - 3; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT3G51180.1p  transcript_id AT3G51180.1  protein_id AT3G51180.1p  transcript_id AT3G51180.1  
At3g51190	chr3:019017105	0.0	C/19017105-19017547,19016606-19016945	AT3G51190.1  CDS  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product structural constituent of ribosome  note structural constituent of ribosome; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Ribosomal protein L2, domain 3 (InterPro:IPR014726), Ribosomal protein L2 (InterPro:IPR002171); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L8 (RPL8C) (TAIR:AT4G36130.1); Has 7467 Blast hits to 7466 proteins in 2205 species: Archae - 236; Bacteria - 3125; Metazoa - 352; Fungi - 188; Plants - 931; Viruses - 0; Other Eukaryotes - 2635 (source: NCBI BLink).  protein_id AT3G51190.1p  transcript_id AT3G51190.1  protein_id AT3G51190.1p  transcript_id AT3G51190.1  
At3g51200	chr3:019018853	0.0	C/19018853-19019173	AT3G51200.1  CDS  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT5G66260.1); Has 595 Blast hits to 585 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 594; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G51200.1p  transcript_id AT3G51200.1  protein_id AT3G51200.1p  transcript_id AT3G51200.1  
At3g51210	chr3:019020886	0.0	W/19020886-19020888,19021001-19021201	AT3G51210.1  CDS  go_function sulfotransferase activity|GO:0008146||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product flavonol 3-sulfotransferase-related  note flavonol 3-sulfotransferase-related; FUNCTIONS IN: sulfotransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Sulfotransferase (InterPro:IPR000863); BEST Arabidopsis thaliana protein match is: sulfotransferase family protein (TAIR:AT5G43690.1); Has 116 Blast hits to 116 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G51210.1p  transcript_id AT3G51210.1  protein_id AT3G51210.1p  transcript_id AT3G51210.1  
At3g51220	chr3:019022499	0.0	C/19022499-19022612,19021943-19022389	AT3G51220.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17940.1); Has 88 Blast hits to 88 proteins in 22 species: Archae - 0; Bacteria - 2; Metazoa - 7; Fungi - 13; Plants - 46; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT3G51220.1p  transcript_id AT3G51220.1  protein_id AT3G51220.1p  transcript_id AT3G51220.1  
At3g51230	chr3:019024186	0.0	C/19024186-19024285,19023565-19024040	AT3G51230.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66230.1); Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G51230.1p  transcript_id AT3G51230.1  protein_id AT3G51230.1p  transcript_id AT3G51230.1  
At3g51238	chr3:019025110	0.0	C/19025110-19026779	AT3G51238.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT3G51240  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G51238.1  
At3g51240	chr3:019025409	0.0	W/19025409-19025768,19025859-19026287,19026371-19026658	AT3G51240.1  CDS  gene_syn F3 H, F3H, FLAVANONE 3-HYDROXYLASE, TRANSPARENT TESTA 6, TT6  gene F3H  function Encodes flavanone 3-hydroxylase that is coordinately expressed with chalcone synthase and chalcone isomerases. Regulates flavonoid biosynthesis.  go_component cellular_component|GO:0005575||ND  go_process response to sucrose stimulus|GO:0009744|16384906|IEP  go_process flavonoid biosynthetic process|GO:0009813|8685272|ISS  go_process flavonoid biosynthetic process|GO:0009813|9770503|IMP  go_process response to UV-B|GO:0010224|12271060|IMP  go_function naringenin 3-dioxygenase activity|GO:0045486|9770503|IMP  product F3H (FLAVANONE 3-HYDROXYLASE); naringenin 3-dioxygenase  note FLAVANONE 3-HYDROXYLASE (F3H); FUNCTIONS IN: naringenin 3-dioxygenase activity; INVOLVED IN: response to UV-B, response to sucrose stimulus, flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G10490.1); Has 5684 Blast hits to 5668 proteins in 676 species: Archae - 0; Bacteria - 696; Metazoa - 104; Fungi - 569; Plants - 3091; Viruses - 0; Other Eukaryotes - 1224 (source: NCBI BLink).  protein_id AT3G51240.1p  transcript_id AT3G51240.1  protein_id AT3G51240.1p  transcript_id AT3G51240.1  
At3g51250	chr3:019028227	0.0	W/19028227-19029188,19029463-19029629,19030057-19030141,19030265-19030442	AT3G51250.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product senescence/dehydration-associated protein-related  note senescence/dehydration-associated protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Senescence-associated (InterPro:IPR009686); BEST Arabidopsis thaliana protein match is: ERD7 (EARLY-RESPONSIVE TO DEHYDRATION 7) (TAIR:AT2G17840.1); Has 204 Blast hits to 204 proteins in 60 species: Archae - 0; Bacteria - 2; Metazoa - 79; Fungi - 29; Plants - 83; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT3G51250.1p  transcript_id AT3G51250.1  protein_id AT3G51250.1p  transcript_id AT3G51250.1  
At3g51260	chr3:019031086	0.0	W/19031086-19031258,19031789-19032203,19032582-19032636,19032658-19032746	AT3G51260.2  CDS  gene_syn 20s proteasome alpha subunit pad1, PAD1  gene PAD1  function 20S proteosomal alpha subunits. Interacts with SnRK, SKP1/ASK1 during proteasomal binding of an SCF ubiquitin ligase.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_function endopeptidase activity|GO:0004175||IEA  go_function threonine-type endopeptidase activity|GO:0004298||IEA  go_component nucleus|GO:0005634|11387208|IDA  go_component spindle|GO:0005819|11387208|IDA  go_component proteasome core complex|GO:0005839|9373170|TAS  go_component proteasome core complex|GO:0005839|9611183|TAS  go_component phragmoplast|GO:0009524|11387208|IDA  go_component proteasome core complex, alpha-subunit complex|GO:0019773||NAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_function peptidase activity|GO:0008233||ISS  product PAD1 (20s proteasome alpha subunit pad1); endopeptidase/ peptidase/ threonine-type endopeptidase  note 20s proteasome alpha subunit pad1 (PAD1); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome alpha-subunit, conserved site (InterPro:IPR000426), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: PAD2 (PROTEASOME ALPHA SUBUNIT D 2); endopeptidase/ peptidase/ threonine-type endopeptidase (TAIR:AT5G66140.1); Has 4181 Blast hits to 4181 proteins in 337 species: Archae - 486; Bacteria - 0; Metazoa - 1516; Fungi - 951; Plants - 494; Viruses - 0; Other Eukaryotes - 734 (source: NCBI BLink).  protein_id AT3G51260.2p  transcript_id AT3G51260.2  protein_id AT3G51260.2p  transcript_id AT3G51260.2  
At3g51260	chr3:019031086	0.0	W/19031086-19031258,19031789-19032203,19032582-19032746	AT3G51260.1  CDS  gene_syn 20s proteasome alpha subunit pad1, PAD1  gene PAD1  function 20S proteosomal alpha subunits. Interacts with SnRK, SKP1/ASK1 during proteasomal binding of an SCF ubiquitin ligase.  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_function endopeptidase activity|GO:0004175||IEA  go_function threonine-type endopeptidase activity|GO:0004298||IEA  go_component nucleus|GO:0005634|11387208|IDA  go_component spindle|GO:0005819|11387208|IDA  go_component proteasome core complex|GO:0005839|9373170|TAS  go_component proteasome core complex|GO:0005839|9611183|TAS  go_component phragmoplast|GO:0009524|11387208|IDA  go_component proteasome core complex, alpha-subunit complex|GO:0019773||NAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_function peptidase activity|GO:0008233||ISS  product PAD1 (20s proteasome alpha subunit pad1); endopeptidase/ peptidase/ threonine-type endopeptidase  note 20s proteasome alpha subunit pad1 (PAD1); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: in 9 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome alpha-subunit, conserved site (InterPro:IPR000426), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: PAD2 (PROTEASOME ALPHA SUBUNIT D 2); endopeptidase/ peptidase/ threonine-type endopeptidase (TAIR:AT5G66140.1); Has 4200 Blast hits to 4200 proteins in 339 species: Archae - 484; Bacteria - 0; Metazoa - 1529; Fungi - 950; Plants - 496; Viruses - 0; Other Eukaryotes - 741 (source: NCBI BLink).  protein_id AT3G51260.1p  transcript_id AT3G51260.1  protein_id AT3G51260.1p  transcript_id AT3G51260.1  
At3g51265	chr3:019033393	0.0	C/19033393-19033464	AT3G51265.1  tRNA  gene_syn 67274.TRNA-ASP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asp (anticodon: GTC)  transcript_id AT3G51265.1  
At3g51270	chr3:019033851	0.0	W/19033851-19033934,19034053-19034099,19034193-19034263,19034382-19034495,19034593-19034768,19034868-19034956,19035181-19035298,19035493-19035566,19035660-19035707,19035853-19036015,19036197-19036328,19036419-19036517,19036602-19036772	AT3G51270.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  product ATP binding / catalytic/ protein serine/threonine kinase  note ATP binding / catalytic/ protein serine/threonine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, catalytic activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RIO-like kinase (InterPro:IPR018934), RIO kinase (InterPro:IPR000687), Protein kinase-like (InterPro:IPR011009), RIO2 kinase, winged helix, N-terminal (InterPro:IPR015285); BEST Arabidopsis thaliana protein match is: RIO1 family protein (TAIR:AT5G37350.1); Has 12154 Blast hits to 7675 proteins in 577 species: Archae - 256; Bacteria - 1067; Metazoa - 4621; Fungi - 1373; Plants - 446; Viruses - 297; Other Eukaryotes - 4094 (source: NCBI BLink).  protein_id AT3G51270.1p  transcript_id AT3G51270.1  protein_id AT3G51270.1p  transcript_id AT3G51270.1  
At3g51280	chr3:019037229	0.0	W/19037229-19037378,19037465-19037677,19037764-19037919,19038008-19038781	AT3G51280.1  CDS  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  product male sterility MS5, putative  note male sterility MS5, putative; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: ATSDI1 (SULPHUR DEFICIENCY-INDUCED 1); binding (TAIR:AT5G48850.1); Has 753 Blast hits to 582 proteins in 92 species: Archae - 6; Bacteria - 185; Metazoa - 0; Fungi - 1; Plants - 101; Viruses - 0; Other Eukaryotes - 460 (source: NCBI BLink).  protein_id AT3G51280.1p  transcript_id AT3G51280.1  protein_id AT3G51280.1p  transcript_id AT3G51280.1  
At3g51290	chr3:019039980	0.0	W/19039980-19040706,19040779-19040975,19041350-19041573,19041681-19041807,19041904-19042437	AT3G51290.1  CDS  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  product proline-rich family protein  note proline-rich family protein; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT3G60320.1); Has 34091 Blast hits to 17701 proteins in 932 species: Archae - 107; Bacteria - 4016; Metazoa - 13252; Fungi - 3462; Plants - 6890; Viruses - 1341; Other Eukaryotes - 5023 (source: NCBI BLink).  protein_id AT3G51290.1p  transcript_id AT3G51290.1  protein_id AT3G51290.1p  transcript_id AT3G51290.1  
At3g51300	chr3:019043197	0.0	W/19043197-19043295,19043386-19043473,19043565-19043674,19043758-19043821,19043902-19044032,19044114-19044215	AT3G51300.1  CDS  gene_syn ARABIDOPSIS THALIANA RHO-RELATED PROTEIN FROM PLANTS 1, ARAC11, ATRAC11, ATROP1, RHO-RELATED PROTEIN FROM PLANTS 1, ROP1, ROP1AT  gene ROP1  function Encodes a pollen-specific Rop GTPase, member of the Rho family of small GTP binding proteins that interacts with RIC3 and RIC4 to control tip growth in pollen tubes. These three proteins promote the proper targeting of exocytic vesicles in the pollen tube tip. ROP1 activity is regulated by the REN1 GTPase activator protein.  go_component nucleus|GO:0005634|15469496|IDA  go_component nucleolus|GO:0005730|15469496|IDA  go_component cytoplasm|GO:0005737|15469496|IDA  go_component spindle|GO:0005819|15469496|IDA  go_component plasma membrane|GO:0005886|11402196|TAS  go_component phragmoplast|GO:0009524|15469496|IDA  go_component apical part of cell|GO:0045177|19108776|IDA  go_process pollen tube growth|GO:0009860|10488239|IMP  go_process regulation of exocytosis|GO:0017157|18591430|IDA  go_process regulation of actin filament polymerization|GO:0030833|15824136|IGI  go_process regulation of actin filament depolymerization|GO:0030834|15824136|IGI  go_process establishment of vesicle localization|GO:0051650|18591430|IDA  go_function GTPase activity|GO:0003924|9765526|ISS  go_function protein binding|GO:0005515|15824136|IPI  go_function GTP binding|GO:0005525|9765526|ISS  go_function GTP binding|GO:0005525||ISS  go_function GTPase activating protein binding|GO:0032794|19108776|IPI  product ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1); GTP binding / GTPase activating protein binding / GTPase/ protein binding  note RHO-RELATED PROTEIN FROM PLANTS 1 (ROP1); FUNCTIONS IN: protein binding, GTP binding, GTPase activity, GTPase activating protein binding; INVOLVED IN: regulation of actin filament polymerization, pollen tube growth, regulation of exocytosis, establishment of vesicle localization, regulation of actin filament depolymerization; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rho type (InterPro:IPR003578); BEST Arabidopsis thaliana protein match is: ARAC1; GTP binding (TAIR:AT2G17800.2); Has 19562 Blast hits to 19535 proteins in 570 species: Archae - 9; Bacteria - 50; Metazoa - 10868; Fungi - 2388; Plants - 1725; Viruses - 19; Other Eukaryotes - 4503 (source: NCBI BLink).  protein_id AT3G51300.1p  transcript_id AT3G51300.1  protein_id AT3G51300.1p  transcript_id AT3G51300.1  
At3g51310	chr3:019049238	0.0	C/19049238-19049321,19049030-19049126,19048817-19048940,19048541-19048726,19048367-19048454,19048148-19048204,19047951-19048040,19047741-19047863,19047476-19047610,19047124-19047240,19046761-19047000,19046614-19046679,19046396-19046485,19046232-19046321,19045979-19046068,19045761-19045829,19045588-19045668,19045400-19045507,19045220-19045323,19044969-19045088,19044634-19044847	AT3G51310.1  CDS  gene_syn VPS35 HOMOLOG C, VPS35C  gene VPS35C  function Homolog of yeast retromer subunit VPS35. Part of a retromer-like protein complex involved in endosome to lysosome protein transport.  go_component membrane|GO:0016020|17432890|IDA  go_component multivesicular body|GO:0005771|16582012|IDA  go_component microsome|GO:0005792|16582012|IDA  go_component membrane|GO:0016020|16582012|IDA  go_component retromer complex|GO:0030904|16582012|IDA  go_component retromer complex|GO:0030904|16582012|ISS  go_process intracellular protein transport|GO:0006886||ISS  go_process endosome to lysosome transport|GO:0008333|16582012|ISS  go_process retrograde transport, endosome to Golgi|GO:0042147||ISS  go_function molecular_function|GO:0003674||ND  product VPS35C (VPS35 HOMOLOG C)  note VPS35 HOMOLOG C (VPS35C); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport, endosome to lysosome transport, retrograde transport, endosome to Golgi; LOCATED IN: retromer complex, microsome, membrane, multivesicular body; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 35 (InterPro:IPR005378); BEST Arabidopsis thaliana protein match is: VPS35A (VPS35 HOMOLOG A) (TAIR:AT2G17790.1); Has 475 Blast hits to 390 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 173; Fungi - 151; Plants - 39; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).  protein_id AT3G51310.1p  transcript_id AT3G51310.1  protein_id AT3G51310.1p  transcript_id AT3G51310.1  
At3g51320	chr3:019049853	0.0	C/19049853-19051445	AT3G51320.1  CDS  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT3G62890.1); Has 12158 Blast hits to 4373 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 18; Plants - 12009; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT3G51320.1p  transcript_id AT3G51320.1  protein_id AT3G51320.1p  transcript_id AT3G51320.1  
At3g51325	chr3:019052259	0.0	W/19052259-19052531	AT3G51325.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G55970.2); Has 4110 Blast hits to 4100 proteins in 188 species: Archae - 0; Bacteria - 0; Metazoa - 1526; Fungi - 265; Plants - 1765; Viruses - 0; Other Eukaryotes - 554 (source: NCBI BLink).  protein_id AT3G51325.1p  transcript_id AT3G51325.1  protein_id AT3G51325.1p  transcript_id AT3G51325.1  
At3g51330	chr3:019055854	0.0	C/19055854-19056152,19055624-19055765,19055303-19055538,19054879-19055109,19054627-19054762,19054370-19054443,19054155-19054254,19053970-19054036,19053790-19053861,19053480-19053712	AT3G51330.1  CDS  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: anchored to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, 4 leaf senescence stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT3G51350.1); Has 1444 Blast hits to 1435 proteins in 152 species: Archae - 0; Bacteria - 8; Metazoa - 179; Fungi - 153; Plants - 984; Viruses - 2; Other Eukaryotes - 118 (source: NCBI BLink).  protein_id AT3G51330.1p  transcript_id AT3G51330.1  protein_id AT3G51330.1p  transcript_id AT3G51330.1  
At3g51340	chr3:019059487	0.0	C/19059487-19059788,19059235-19059376,19058917-19059149,19058467-19058697,19058205-19058340,19057891-19057964,19057650-19057773,19057487-19057547,19057310-19057381,19057013-19057230	AT3G51340.1  CDS  gene_syn F26O13.2  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartic-type endopeptidase  note aspartic-type endopeptidase; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT3G51330.1); Has 1313 Blast hits to 1306 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 127; Fungi - 137; Plants - 966; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT3G51340.1p  transcript_id AT3G51340.1  protein_id AT3G51340.1p  transcript_id AT3G51340.1  
At3g51350	chr3:019062950	0.0	C/19062950-19063248,19062661-19062802,19062340-19062572,19061835-19062065,19061609-19061744,19061415-19061488,19061100-19061199,19060954-19061020,19060806-19060877,19060485-19060717	AT3G51350.1  CDS  gene_syn F26O13.3  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: anchored to membrane; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT3G51330.1); Has 1990 Blast hits to 1979 proteins in 231 species: Archae - 2; Bacteria - 26; Metazoa - 475; Fungi - 311; Plants - 1045; Viruses - 2; Other Eukaryotes - 129 (source: NCBI BLink).  protein_id AT3G51350.1p  transcript_id AT3G51350.1  protein_id AT3G51350.1p  transcript_id AT3G51350.1  
At3g51360	chr3:019066301	0.0	C/19066301-19066560,19066070-19066208,19065760-19065989,19065431-19065652,19065213-19065348,19065034-19065113,19064852-19064948,19064707-19064773,19064539-19064610,19064294-19064457	AT3G51360.1  CDS  gene_syn F26O13.1  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT2G17760.1); Has 1706 Blast hits to 1700 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 409; Fungi - 216; Plants - 970; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).  protein_id AT3G51360.1p  transcript_id AT3G51360.1  protein_id AT3G51360.1p  transcript_id AT3G51360.1  
At3g51370	chr3:019070054	0.0	W/19070054-19070366,19070445-19070812,19071418-19071654,19071754-19071975	AT3G51370.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C family protein / PP2C family protein (TAIR:AT5G66080.1); Has 3627 Blast hits to 3625 proteins in 218 species: Archae - 0; Bacteria - 13; Metazoa - 1230; Fungi - 371; Plants - 1273; Viruses - 3; Other Eukaryotes - 737 (source: NCBI BLink).  protein_id AT3G51370.1p  transcript_id AT3G51370.1  protein_id AT3G51370.1p  transcript_id AT3G51370.1  
At3g51370	chr3:019070387	0.0	W/19070387-19070812,19071418-19071654,19071754-19071975	AT3G51370.2  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C family protein / PP2C family protein (TAIR:AT5G66080.1); Has 3320 Blast hits to 3319 proteins in 210 species: Archae - 0; Bacteria - 6; Metazoa - 1150; Fungi - 338; Plants - 1182; Viruses - 3; Other Eukaryotes - 641 (source: NCBI BLink).  protein_id AT3G51370.2p  transcript_id AT3G51370.2  protein_id AT3G51370.2p  transcript_id AT3G51370.2  
At3g51375	chr3:019073450	0.0	W/19073450-19073541	AT3G51375.1  miRNA  gene_syn MICRORNA 171A, MIR171A  gene MIR171A  function Encodes a microRNA that targets several SCL family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGAUUGAGCCGCGCCAAUAUC  go_component cellular_component|GO:0005575||ND  go_process gene silencing by miRNA|GO:0035195|15200956|TAS  go_function molecular_function|GO:0003674||ND  product MIR171A (MICRORNA 171A); miRNA  transcript_id AT3G51375.1  
At3g51380	chr3:019074274	0.0	C/19074274-19074426,19074036-19074194	AT3G51380.1  CDS  gene_syn IQ-domain 20, IQD20  gene IQD20  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product IQD20 (IQ-domain 20); calmodulin binding  note IQ-domain 20 (IQD20); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQD19 (IQ-domain 19); calmodulin binding (TAIR:AT4G14750.1); Has 385 Blast hits to 384 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 2; Plants - 364; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G51380.1p  transcript_id AT3G51380.1  protein_id AT3G51380.1p  transcript_id AT3G51380.1  
At3g51390	chr3:019075718	0.0	W/19075718-19075802,19075905-19076019,19076106-19076180,19076271-19076342,19076672-19076803,19076919-19076952,19077077-19077186,19077298-19077381,19077485-19077568,19077662-19077727,19077801-19077966	AT3G51390.1  CDS  go_component plasma membrane|GO:0005886|17151019|IDA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc finger (DHHC type) family protein  note zinc finger (DHHC type) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: zinc finger (DHHC type) family protein (TAIR:AT3G48760.1); Has 3834 Blast hits to 3831 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 1910; Fungi - 473; Plants - 394; Viruses - 0; Other Eukaryotes - 1057 (source: NCBI BLink).  protein_id AT3G51390.1p  transcript_id AT3G51390.1  protein_id AT3G51390.1p  transcript_id AT3G51390.1  
At3g51400	chr3:019078086	0.0	C/19078086-19078919	AT3G51400.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF241, plant (InterPro:IPR004320); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35720.1); Has 229 Blast hits to 227 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 229; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G51400.1p  transcript_id AT3G51400.1  protein_id AT3G51400.1p  transcript_id AT3G51400.1  
At3g51410	chr3:019081357	0.0	C/19081357-19082205	AT3G51410.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, male gametophyte, sepal, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF241, plant (InterPro:IPR004320); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35680.1); Has 250 Blast hits to 246 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 17; Fungi - 2; Plants - 227; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G51410.1p  transcript_id AT3G51410.1  protein_id AT3G51410.1p  transcript_id AT3G51410.1  
At3g51420	chr3:019084082	0.0	W/19084082-19084480,19084557-19084867,19084952-19085075,19085173-19085451	AT3G51420.1  CDS  gene_syn ATSSL4, SSL4, STRICTOSIDINE SYNTHASE-LIKE 4  gene SSL4  go_component endomembrane system|GO:0012505||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function strictosidine synthase activity|GO:0016844||IEA  go_process alkaloid biosynthetic process|GO:0009821||ISS  go_function strictosidine synthase activity|GO:0016844||ISS  product SSL4 (STRICTOSIDINE SYNTHASE-LIKE 4); strictosidine synthase  note STRICTOSIDINE SYNTHASE-LIKE 4 (SSL4); FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: alkaloid biosynthetic process, biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Strictosidine synthase, conserved region (InterPro:IPR018119), Strictosidine synthase (InterPro:IPR004141), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: YLS2; strictosidine synthase (TAIR:AT3G51430.1); Has 925 Blast hits to 920 proteins in 207 species: Archae - 3; Bacteria - 290; Metazoa - 196; Fungi - 4; Plants - 277; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink).  protein_id AT3G51420.1p  transcript_id AT3G51420.1  protein_id AT3G51420.1p  transcript_id AT3G51420.1  
At3g51430	chr3:019086548	0.0	W/19086548-19086946,19087023-19087333,19087420-19087543,19087628-19087909	AT3G51430.1  CDS  gene_syn YELLOW-LEAF-SPECIFIC GENE 2, YLS2  gene YLS2  function strictosidine synthase-like protein  go_function strictosidine synthase activity|GO:0016844||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process response to ethylene stimulus|GO:0009723|11230571|IEP  go_process response to abscisic acid stimulus|GO:0009737|11230571|IEP  go_process alkaloid biosynthetic process|GO:0009821||ISS  go_process leaf senescence|GO:0010150|11230571|IEP  go_function strictosidine synthase activity|GO:0016844||ISS  product YLS2; strictosidine synthase  note YLS2; FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: response to ethylene stimulus, leaf senescence, alkaloid biosynthetic process, response to abscisic acid stimulus; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Strictosidine synthase, conserved region (InterPro:IPR018119), Strictosidine synthase (InterPro:IPR004141), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: strictosidine synthase family protein (TAIR:AT3G51440.1); Has 1025 Blast hits to 1020 proteins in 234 species: Archae - 13; Bacteria - 360; Metazoa - 197; Fungi - 8; Plants - 282; Viruses - 0; Other Eukaryotes - 165 (source: NCBI BLink).  protein_id AT3G51430.1p  transcript_id AT3G51430.1  protein_id AT3G51430.1p  transcript_id AT3G51430.1  
At3g51440	chr3:019089114	0.0	W/19089114-19089512,19089586-19089896,19089988-19090111,19090256-19090537	AT3G51440.1  CDS  go_process biosynthetic process|GO:0009058||IEA  go_function strictosidine synthase activity|GO:0016844||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process alkaloid biosynthetic process|GO:0009821||ISS  go_function strictosidine synthase activity|GO:0016844||ISS  product strictosidine synthase family protein  note strictosidine synthase family protein; FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: alkaloid biosynthetic process, biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Strictosidine synthase, conserved region (InterPro:IPR018119), Strictosidine synthase (InterPro:IPR004141), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: YLS2; strictosidine synthase (TAIR:AT3G51430.1); Has 1156 Blast hits to 1151 proteins in 269 species: Archae - 13; Bacteria - 456; Metazoa - 195; Fungi - 19; Plants - 279; Viruses - 0; Other Eukaryotes - 194 (source: NCBI BLink).  protein_id AT3G51440.1p  transcript_id AT3G51440.1  protein_id AT3G51440.1p  transcript_id AT3G51440.1  
At3g51450	chr3:019091013	0.0	W/19091013-19091411,19091478-19091788,19091886-19092009,19092112-19092393	AT3G51450.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function strictosidine synthase activity|GO:0016844||IEA  go_process alkaloid biosynthetic process|GO:0009821||ISS  go_function strictosidine synthase activity|GO:0016844||ISS  product strictosidine synthase family protein  note strictosidine synthase family protein; FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: alkaloid biosynthetic process, biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Strictosidine synthase, conserved region (InterPro:IPR018119), Strictosidine synthase (InterPro:IPR004141), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: YLS2; strictosidine synthase (TAIR:AT3G51430.1); Has 1009 Blast hits to 1004 proteins in 213 species: Archae - 15; Bacteria - 329; Metazoa - 196; Fungi - 12; Plants - 277; Viruses - 0; Other Eukaryotes - 180 (source: NCBI BLink).  protein_id AT3G51450.1p  transcript_id AT3G51450.1  protein_id AT3G51450.1p  transcript_id AT3G51450.1  
At3g51460	chr3:019093007	0.0	W/19093007-19093151,19093246-19093329,19093470-19093597,19093689-19093780,19093956-19094013,19094129-19094185,19094284-19094317,19094416-19094496,19094840-19094946,19095101-19095187,19095276-19095353,19095505-19095575,19095661-19095759,19095857-19095956,19096039-19096147,19096240-19096312,19096436-19096529,19096672-19096764,19096858-19096924,19097006-19097142	AT3G51460.1  CDS  gene_syn RHD4, ROOT HAIR DEFECTIVE4  gene RHD4  function Encodes RHD4 (ROOT HAIR DEFECTIVE4), a phosphatidylinositol-4-phosphate phosphatase required for root hair development.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component plasma membrane of cell tip|GO:0031520|18281508|IDA  go_process root hair cell tip growth|GO:0048768|18281508|IMP  go_function phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|GO:0004439||ISS  go_function phosphatidylinositol-4-phosphate phosphatase activity|GO:0043812|18281508|IDA  product RHD4 (ROOT HAIR DEFECTIVE4); phosphatidylinositol-4,5-bisphosphate 5-phosphatase/ phosphatidylinositol-4-phosphate phosphatase  note ROOT HAIR DEFECTIVE4 (RHD4); FUNCTIONS IN: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity, phosphatidylinositol-4-phosphate phosphatase activity; INVOLVED IN: root hair cell tip growth; LOCATED IN: plasma membrane of cell tip, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Synaptojanin, N-terminal (InterPro:IPR002013); BEST Arabidopsis thaliana protein match is: ATSAC1B (SUPPRESSOR OF ACTIN 1B); phosphatidylinositol-4,5-bisphosphate 5-phosphatase (TAIR:AT5G66020.1); Has 1235 Blast hits to 1168 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 460; Fungi - 378; Plants - 150; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).  protein_id AT3G51460.1p  transcript_id AT3G51460.1  protein_id AT3G51460.1p  transcript_id AT3G51460.1  
At3g51470	chr3:019099098	0.0	C/19099098-19099244,19098757-19098933,19097924-19098685	AT3G51470.1  CDS  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT2G33700.1); Has 4518 Blast hits to 4493 proteins in 371 species: Archae - 3; Bacteria - 309; Metazoa - 1375; Fungi - 473; Plants - 1331; Viruses - 9; Other Eukaryotes - 1018 (source: NCBI BLink).  protein_id AT3G51470.1p  transcript_id AT3G51470.1  protein_id AT3G51470.1p  transcript_id AT3G51470.1  
At3g51478	chr3:019099921	0.0	W/19099921-19100439	AT3G51478.1  pseudogenic_transcript  pseudo  function pseudogene of glutamate receptor family  
At3g51480	chr3:019101256	0.0	W/19101256-19101514,19101798-19103113,19103212-19103489,19103581-19103612,19103702-19104108,19104262-19104681	AT3G51480.1  CDS  gene_syn ATGLR3.6, GLR3.6, GLUTAMATE RECEPTOR 3.6  gene ATGLR3.6  function member of Putative ligand-gated ion channel subunit family  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process cellular calcium ion homeostasis|GO:0006874|11379626|NAS  go_process response to light stimulus|GO:0009416|11379626|NAS  go_function intracellular ligand-gated ion channel activity|GO:0005217||ISS  product ATGLR3.6 (GLUTAMATE RECEPTOR 3.6); intracellular ligand-gated ion channel  note GLUTAMATE RECEPTOR 3.6 (ATGLR3.6); FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), GPCR, family 3, gamma-aminobutyric acid receptor, type B (InterPro:IPR002455), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: ATGLR3.3; intracellular ligand-gated ion channel (TAIR:AT1G42540.1); Has 4814 Blast hits to 4702 proteins in 320 species: Archae - 31; Bacteria - 412; Metazoa - 3804; Fungi - 0; Plants - 311; Viruses - 0; Other Eukaryotes - 256 (source: NCBI BLink).  protein_id AT3G51480.1p  transcript_id AT3G51480.1  protein_id AT3G51480.1p  transcript_id AT3G51480.1  
At3g51490	chr3:019107484	0.0	C/19107484-19107562,19106831-19107397,19105835-19106757,19105585-19105748,19105018-19105474	AT3G51490.1  CDS  gene_syn TMT3, TONOPLAST MONOSACCHARIDE TRANSPORTER3  gene TMT3  go_component plant-type vacuole membrane|GO:0009705|17158605|IDA  go_component membrane|GO:0016020||ISS  go_process response to cold|GO:0009409|17158605|IEP  go_process response to water deprivation|GO:0009414|17158605|IEP  go_process response to salt stress|GO:0009651|17158605|IEP  go_process response to sucrose stimulus|GO:0009744|17158605|IEP  go_process response to glucose stimulus|GO:0009749|17158605|IEP  go_process response to fructose stimulus|GO:0009750|17158605|IEP  go_function nucleoside transmembrane transporter activity|GO:0005337||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product TMT3 (TONOPLAST MONOSACCHARIDE TRANSPORTER3); carbohydrate transmembrane transporter/ nucleoside transmembrane transporter/ sugar:hydrogen symporter  note TONOPLAST MONOSACCHARIDE TRANSPORTER3 (TMT3); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, nucleoside transmembrane transporter activity; INVOLVED IN: in 6 processes; LOCATED IN: plant-type vacuole membrane, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2); carbohydrate transmembrane transporter/ nucleoside transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT4G35300.1); Has 30975 Blast hits to 23523 proteins in 1442 species: Archae - 394; Bacteria - 13253; Metazoa - 6148; Fungi - 7564; Plants - 2032; Viruses - 0; Other Eukaryotes - 1584 (source: NCBI BLink).  protein_id AT3G51490.1p  transcript_id AT3G51490.1  protein_id AT3G51490.1p  transcript_id AT3G51490.1  
At3g51500	chr3:019108353	0.0	W/19108353-19108703	AT3G51500.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 13 Blast hits to 13 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G51500.1p  transcript_id AT3G51500.1  protein_id AT3G51500.1p  transcript_id AT3G51500.1  
At3g51510	chr3:019109118	0.0	W/19109118-19109468,19109570-19109686,19109765-19109842	AT3G51510.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 22 Blast hits to 22 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G51510.1p  transcript_id AT3G51510.1  protein_id AT3G51510.1p  transcript_id AT3G51510.1  
At3g51520	chr3:019110739	0.0	W/19110739-19110887,19110973-19111133,19111221-19111327,19111412-19111567,19111772-19111858,19112016-19112113,19112208-19112295,19112420-19112518	AT3G51520.1  CDS  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function diacylglycerol O-acyltransferase activity|GO:0004144||ISS  product diacylglycerol acyltransferase family  note diacylglycerol acyltransferase family; FUNCTIONS IN: diacylglycerol O-acyltransferase activity, transferase activity, transferring acyl groups other than amino-acyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Diacylglycerol acyltransferase (InterPro:IPR007130); Has 889 Blast hits to 882 proteins in 180 species: Archae - 0; Bacteria - 135; Metazoa - 472; Fungi - 110; Plants - 62; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT3G51520.1p  transcript_id AT3G51520.1  protein_id AT3G51520.1p  transcript_id AT3G51520.1  
At3g51530	chr3:019114448	0.0	C/19114448-19114497,19113497-19114364,19113292-19113426,19112873-19113187	AT3G51530.1  CDS  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G52680.2); Has 1266 Blast hits to 1239 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1266; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G51530.1p  transcript_id AT3G51530.1  protein_id AT3G51530.1p  transcript_id AT3G51530.1  
At3g51540	chr3:019115342	0.0	W/19115342-19115444,19115687-19115783,19115885-19115996,19116072-19116737,19116872-19117210	AT3G51540.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: trichome; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G08670.1); Has 20970 Blast hits to 8605 proteins in 577 species: Archae - 52; Bacteria - 2014; Metazoa - 8530; Fungi - 3256; Plants - 370; Viruses - 659; Other Eukaryotes - 6089 (source: NCBI BLink).  protein_id AT3G51540.1p  transcript_id AT3G51540.1  protein_id AT3G51540.1p  transcript_id AT3G51540.1  
At3g51550	chr3:019117877	0.0	C/19117877-19120564	AT3G51550.1  CDS  gene_syn FER, FERONIA  gene FER  function Encodes a synergid-expressed, plasma-membrane localized receptor-like kinase that accumulates asymetrically in the synergid membrnane at the filiform apparatus and mediates male-female gametophyte interactions during pollen tube reception.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component plasma membrane|GO:0005886|17673660|IDA  go_component filiform apparatus|GO:0043680|17673660|IDA  go_process pollen tube reception|GO:0010483|17673660|IMP  go_process protein amino acid autophosphorylation|GO:0046777|17673660|IDA  go_function protein kinase activity|GO:0004672|17673660|IDA  go_function kinase activity|GO:0016301||ISS  product FER (FERONIA); kinase/ protein kinase  note FERONIA (FER); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: pollen tube reception, protein amino acid autophosphorylation; LOCATED IN: filiform apparatus, plasma membrane, membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G04690.1); Has 81933 Blast hits to 81006 proteins in 3073 species: Archae - 46; Bacteria - 7093; Metazoa - 36361; Fungi - 6132; Plants - 18396; Viruses - 372; Other Eukaryotes - 13533 (source: NCBI BLink).  protein_id AT3G51550.1p  transcript_id AT3G51550.1  protein_id AT3G51550.1p  transcript_id AT3G51550.1  
At3g51560	chr3:019125501	0.0	C/19125501-19125913,19124355-19125411,19123970-19124266,19122515-19123888,19121808-19122428	AT3G51560.1  CDS  gene_syn T18N14.3  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product ATP binding / protein binding / transmembrane receptor  note ATP binding / protein binding / transmembrane receptor; FUNCTIONS IN: transmembrane receptor activity, protein binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G19520.1); Has 21328 Blast hits to 14518 proteins in 620 species: Archae - 16; Bacteria - 1433; Metazoa - 3776; Fungi - 201; Plants - 15127; Viruses - 18; Other Eukaryotes - 757 (source: NCBI BLink).  protein_id AT3G51560.1p  transcript_id AT3G51560.1  protein_id AT3G51560.1p  transcript_id AT3G51560.1  
At3g51570	chr3:019126358	0.0	W/19126358-19126842,19126960-19128106,19128209-19128529,19128617-19130016,19130129-19130456	AT3G51570.1  CDS  gene_syn T18N14.4  go_component membrane|GO:0016020|17432890|IDA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, protein binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G45060.1); Has 14032 Blast hits to 10418 proteins in 393 species: Archae - 8; Bacteria - 737; Metazoa - 1709; Fungi - 67; Plants - 10965; Viruses - 2; Other Eukaryotes - 544 (source: NCBI BLink).  protein_id AT3G51570.1p  transcript_id AT3G51570.1  protein_id AT3G51570.1p  transcript_id AT3G51570.1  
At3g51580	chr3:019132885	0.0	C/19132885-19133016,19132348-19132807,19131825-19131943,19131167-19131628	AT3G51580.1  CDS  gene_syn T18N14.6  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 1438 Blast hits to 1284 proteins in 200 species: Archae - 0; Bacteria - 339; Metazoa - 353; Fungi - 200; Plants - 269; Viruses - 37; Other Eukaryotes - 240 (source: NCBI BLink).  protein_id AT3G51580.1p  transcript_id AT3G51580.1  protein_id AT3G51580.1p  transcript_id AT3G51580.1  
At3g51590	chr3:019136314	0.0	C/19136314-19136654,19135828-19135846	AT3G51590.1  CDS  gene_syn LIPID TRANSFER PROTEIN 12, LTP12, T18N14.1  gene LTP12  function Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The LTP12 promoter is active exclusively in the tapetum during the uninucleate microspore and bicellular pollen stages. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.  go_process lipid transport|GO:0006869||IEA  go_function lipid binding|GO:0008289||IEA  go_component plant-type cell wall|GO:0009505|10940464|ISS  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product LTP12 (LIPID TRANSFER PROTEIN 12); lipid binding  note LIPID TRANSFER PROTEIN 12 (LTP12); FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: plant-type cell wall; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: D pollen mother cell meiosis stage, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding (TAIR:AT5G59320.1); Has 821 Blast hits to 820 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 817; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G51590.1p  transcript_id AT3G51590.1  protein_id AT3G51590.1p  transcript_id AT3G51590.1  
At3g51600	chr3:019138778	0.0	C/19138778-19139124,19138661-19138670	AT3G51600.1  CDS  gene_syn LTP5, Lipid transfer protein 5, T18N14.5  gene LTP5  function Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.  go_component cell wall|GO:0005618|15593128|IDA  go_process lipid transport|GO:0006869|10940464|ISS  go_function lipid transporter activity|GO:0005319|10940464|ISS  product LTP5 (Lipid transfer protein 5); lipid transporter  note Lipid transfer protein 5 (LTP5); FUNCTIONS IN: lipid transporter activity; INVOLVED IN: lipid transport; LOCATED IN: cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: LP1; calmodulin binding (TAIR:AT2G38540.1); Has 811 Blast hits to 810 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 807; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G51600.1p  transcript_id AT3G51600.1  protein_id AT3G51600.1p  transcript_id AT3G51600.1  
At3g51610	chr3:019141837	0.0	C/19141837-19141986,19141693-19141755,19141553-19141608,19141060-19141153,19140864-19140924,19140204-19140285,19140021-19140076,19139861-19139924,19139715-19139781	AT3G51610.1  CDS  gene_syn T18N14.2  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 23 Blast hits to 23 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G51610.1p  transcript_id AT3G51610.1  protein_id AT3G51610.1p  transcript_id AT3G51610.1  
At3g51620	chr3:019143859	0.0	W/19143859-19144086,19144440-19144625,19144776-19144868,19145232-19145414,19145494-19145596,19145679-19145864,19146251-19147317,19147397-19147782,19147887-19147944	AT3G51620.2  CDS  gene_syn T18N14.7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61690.1); Has 258 Blast hits to 245 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 29; Plants - 92; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT3G51620.2p  transcript_id AT3G51620.2  protein_id AT3G51620.2p  transcript_id AT3G51620.2  
At3g51620	chr3:019143859	0.0	W/19143859-19144086,19144440-19144625,19144776-19144868,19145494-19145596,19145679-19145864,19146251-19147317,19147397-19147782,19147873-19147891	AT3G51620.1  CDS  gene_syn T18N14.7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: nucleotidyltransferase family protein (TAIR:AT3G56320.1); Has 160 Blast hits to 133 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 21; Plants - 98; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT3G51620.1p  transcript_id AT3G51620.1  protein_id AT3G51620.1p  transcript_id AT3G51620.1  
At3g51632	chr3:019149198	0.0	W/19149198-19149386	AT3G51632.1  CDS  gene_syn CPuORF44, Conserved peptide upstream open reading frame 44  gene CPuORF44  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF44 represents a conserved upstream opening reading frame relative to major ORF AT3G51630.1  product CPuORF44 (Conserved peptide upstream open reading frame 44)  note Conserved peptide upstream open reading frame 44 (CPuORF44); Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G51632.1p  transcript_id AT3G51632.1  protein_id AT3G51632.1p  transcript_id AT3G51632.1  
At3g51630	chr3:019149487	0.0	W/19149487-19149564,19149828-19150093,19150198-19150421,19150508-19150665,19150758-19151085,19151329-19151924	AT3G51630.1  CDS  gene_syn ATWNK5, WITH NO LYSINE (K) KINASE 5, WNK5, ZIK1  gene WNK5  function Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases.  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468|12506983|TAS  go_process photoperiodism, flowering|GO:0048573|18761494|IMP  go_function protein kinase activity|GO:0004672|12506983|TAS  product WNK5 (WITH NO LYSINE (K) KINASE 5); protein kinase  note WITH NO LYSINE (K) KINASE 5 (WNK5); FUNCTIONS IN: protein kinase activity; INVOLVED IN: photoperiodism, flowering, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: WNK4 (WITH NO K (=LYSINE) 4); kinase/ protein kinase (TAIR:AT5G58350.1); Has 76159 Blast hits to 75368 proteins in 2050 species: Archae - 40; Bacteria - 6493; Metazoa - 31553; Fungi - 6791; Plants - 16582; Viruses - 370; Other Eukaryotes - 14330 (source: NCBI BLink).  protein_id AT3G51630.1p  transcript_id AT3G51630.1  protein_id AT3G51630.1p  transcript_id AT3G51630.1  
At3g51636	chr3:019153592	0.0	W/19153592-19153732	AT3G51636.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G51636.1p  transcript_id AT3G51636.1  protein_id AT3G51636.1p  transcript_id AT3G51636.1  
At3g51640	chr3:019153918	0.0	W/19153918-19153944,19155976-19156934,19157041-19157134	AT3G51640.2  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51650.1).  protein_id AT3G51640.2p  transcript_id AT3G51640.2  protein_id AT3G51640.2p  transcript_id AT3G51640.2  
At3g51640	chr3:019154342	0.0	W/19154342-19155769,19155976-19156934,19157041-19157134	AT3G51640.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51650.1); Has 25330 Blast hits to 12415 proteins in 835 species: Archae - 31; Bacteria - 2255; Metazoa - 10387; Fungi - 2427; Plants - 849; Viruses - 177; Other Eukaryotes - 9204 (source: NCBI BLink).  protein_id AT3G51640.1p  transcript_id AT3G51640.1  protein_id AT3G51640.1p  transcript_id AT3G51640.1  
At3g51642	chr3:019157826	0.0	C/19157826-19157936	AT3G51642.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G51642.1p  transcript_id AT3G51642.1  protein_id AT3G51642.1p  transcript_id AT3G51642.1  
At3g51644	chr3:019158276	0.0	C/19158276-19158416	AT3G51644.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G51644.1p  transcript_id AT3G51644.1  protein_id AT3G51644.1p  transcript_id AT3G51644.1  
At3g51650	chr3:019159497	0.0	W/19159497-19160924,19161109-19162067,19162174-19162267	AT3G51650.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51640.1); Has 26672 Blast hits to 13283 proteins in 848 species: Archae - 33; Bacteria - 2345; Metazoa - 10960; Fungi - 2574; Plants - 906; Viruses - 195; Other Eukaryotes - 9659 (source: NCBI BLink).  protein_id AT3G51650.1p  transcript_id AT3G51650.1  protein_id AT3G51650.1p  transcript_id AT3G51650.1  
At3g51660	chr3:019164966	0.0	C/19164966-19165076,19164229-19164456	AT3G51660.1  CDS  go_component peroxisome|GO:0005777|17951448|IDA  go_process inflammatory response|GO:0006954||ISS  go_process response to other organism|GO:0051707||ISS  go_function molecular_function|GO:0003674||ND  product macrophage migration inhibitory factor family protein / MIF family protein  note macrophage migration inhibitory factor family protein / MIF family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: inflammatory response, response to other organism; LOCATED IN: peroxisome; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tautomerase (InterPro:IPR014347), Macrophage migration inhibitory factor (InterPro:IPR001398); BEST Arabidopsis thaliana protein match is: macrophage migration inhibitory factor family protein / MIF family protein (TAIR:AT5G01650.2); Has 238 Blast hits to 238 proteins in 65 species: Archae - 0; Bacteria - 18; Metazoa - 119; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT3G51660.1p  transcript_id AT3G51660.1  protein_id AT3G51660.1p  transcript_id AT3G51660.1  
At3g51670	chr3:019168912	0.0	W/19168912-19169610,19170127-19170251,19170345-19170486,19170585-19170848	AT3G51670.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  note SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), GOLD (InterPro:IPR009038), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT1G72160.1); Has 2055 Blast hits to 2052 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 913; Fungi - 508; Plants - 445; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).  protein_id AT3G51670.1p  transcript_id AT3G51670.1  protein_id AT3G51670.1p  transcript_id AT3G51670.1  
At3g51680	chr3:019174576	0.0	C/19174576-19174667,19173622-19174441	AT3G51680.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon, root; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT3G26770.1); Has 81122 Blast hits to 80966 proteins in 2318 species: Archae - 472; Bacteria - 43589; Metazoa - 5637; Fungi - 4452; Plants - 1674; Viruses - 5; Other Eukaryotes - 25293 (source: NCBI BLink).  protein_id AT3G51680.1p  transcript_id AT3G51680.1  protein_id AT3G51680.1p  transcript_id AT3G51680.1  
At3g51690	chr3:019177967	0.0	C/19177967-19178107,19177388-19177673,19176731-19177299	AT3G51690.1  CDS  function DNA helicase homolog PIF1.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF889, eukaryote (InterPro:IPR010285); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51700.1); Has 543 Blast hits to 541 proteins in 127 species: Archae - 0; Bacteria - 65; Metazoa - 119; Fungi - 67; Plants - 160; Viruses - 2; Other Eukaryotes - 130 (source: NCBI BLink).  protein_id AT3G51690.1p  transcript_id AT3G51690.1  protein_id AT3G51690.1p  transcript_id AT3G51690.1  
At3g51700	chr3:019181002	0.0	C/19181002-19181145,19180146-19180431,19179443-19180047	AT3G51700.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF889, eukaryote (InterPro:IPR010285); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51690.1); Has 713 Blast hits to 710 proteins in 170 species: Archae - 0; Bacteria - 130; Metazoa - 126; Fungi - 106; Plants - 162; Viruses - 4; Other Eukaryotes - 185 (source: NCBI BLink).  protein_id AT3G51700.1p  transcript_id AT3G51700.1  protein_id AT3G51700.1p  transcript_id AT3G51700.1  
At3g51710	chr3:019182484	0.0	W/19182484-19182897,19182980-19183996	AT3G51710.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function sugar binding|GO:0005529||IEA  go_process biological_process|GO:0008150||ND  go_function sugar binding|GO:0005529||ISS  product curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein  note curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein; FUNCTIONS IN: sugar binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609), CW (InterPro:IPR006583); BEST Arabidopsis thaliana protein match is: SD2-5 (S-DOMAIN-2 5); carbohydrate binding / kinase/ protein kinase (TAIR:AT4G32300.1); Has 846 Blast hits to 834 proteins in 45 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 844; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G51710.1p  transcript_id AT3G51710.1  protein_id AT3G51710.1p  transcript_id AT3G51710.1  
At3g51720	chr3:019185119	0.0	W/19185119-19185259,19185436-19186518	AT3G51720.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38370.1); Has 5187 Blast hits to 4108 proteins in 541 species: Archae - 110; Bacteria - 625; Metazoa - 2648; Fungi - 294; Plants - 305; Viruses - 9; Other Eukaryotes - 1196 (source: NCBI BLink).  protein_id AT3G51720.1p  transcript_id AT3G51720.1  protein_id AT3G51720.1p  transcript_id AT3G51720.1  
At3g51730	chr3:019186970	0.0	W/19186970-19187060,19187291-19187439,19187556-19187753,19188057-19188116,19188293-19188436	AT3G51730.1  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function molecular_function|GO:0003674||ND  product saposin B domain-containing protein  note saposin B domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Saposin B (InterPro:IPR008139), Saposin-like (InterPro:IPR011001), Saposin-like type B, 1 (InterPro:IPR007856), Saposin-like type B, 2 (InterPro:IPR008138); BEST Arabidopsis thaliana protein match is: saposin B domain-containing protein (TAIR:AT5G01800.1); Has 852 Blast hits to 399 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 693; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT3G51730.1p  transcript_id AT3G51730.1  protein_id AT3G51730.1p  transcript_id AT3G51730.1  
At3g51740	chr3:019189248	0.0	W/19189248-19191120,19191205-19191842	AT3G51740.1  CDS  gene_syn IMK2, INFLORESCENCE MERISTEM RECEPTOR-LIKE KINASE 2  gene IMK2  function encodes a leucine-repeat receptor kinase expressed in inflorescence meristem. Locus association was made from performing sequence analysis with IMK3 (MRLK) whose locus association was provided by the authors.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_component membrane|GO:0016020||NAS  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein kinase activity|GO:0004672||NAS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product IMK2 (INFLORESCENCE MERISTEM RECEPTOR-LIKE KINASE 2); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note INFLORESCENCE MERISTEM RECEPTOR-LIKE KINASE 2 (IMK2); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: cell wall, plasma membrane, membrane, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: MRLK (MERISTEMATIC RECEPTOR-LIKE KINASE); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase (TAIR:AT3G56100.1); Has 131162 Blast hits to 92000 proteins in 2738 species: Archae - 72; Bacteria - 9807; Metazoa - 55316; Fungi - 6355; Plants - 42393; Viruses - 410; Other Eukaryotes - 16809 (source: NCBI BLink).  protein_id AT3G51740.1p  transcript_id AT3G51740.1  protein_id AT3G51740.1p  transcript_id AT3G51740.1  
At3g51750	chr3:019197034	0.0	C/19197034-19197307,19196706-19196761	AT3G51750.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G51750.2p  transcript_id AT3G51750.2  protein_id AT3G51750.2p  transcript_id AT3G51750.2  
At3g51750	chr3:019197034	0.0	C/19197034-19197307,19196706-19196764	AT3G51750.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G51750.1p  transcript_id AT3G51750.1  protein_id AT3G51750.1p  transcript_id AT3G51750.1  
At3g51760	chr3:019199160	0.0	C/19199160-19199405,19198541-19199074	AT3G51760.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 15 Blast hits to 15 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G51760.1p  transcript_id AT3G51760.1  protein_id AT3G51760.1p  transcript_id AT3G51760.1  
At3g51760	chr3:019199160	0.0	C/19199160-19199405,19198541-19199074	AT3G51760.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 15 Blast hits to 15 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G51760.2p  transcript_id AT3G51760.2  protein_id AT3G51760.2p  transcript_id AT3G51760.2  
At3g51770	chr3:019201948	0.0	C/19201948-19203974,19201549-19201840,19200951-19201260,19200328-19200554	AT3G51770.1  CDS  gene_syn ETHYLENE OVERPRODUCER 1, ETHYLENE OVERPRODUCER1, ETO1  gene ETO1  function Encodes a negative regulator of 1-aminocyclopropane-1-carboxylic acid synthase5(ACS5), which catalyze the rate-limiting step in ethylene biosynthesis. ETO1 directly interacts with ACS5 and inhibits its enzyme activity and targets it for degradation via proteasome-dependent pathway. It also interacts with CUL3 (a component of ubiquitin ligase complexes). eto1 (and eto3) mutations elevate ethylene biosynthesis by affecting the posttranscriptional regulation of ACS  go_component cellular_component|GO:0005575||ND  go_process ethylene biosynthetic process|GO:0009693||IMP  go_process sugar mediated signaling|GO:0010182|12663220|TAS  go_process regulation of ethylene biosynthetic process|GO:0010364|15118728|IDA  go_process stem cell division|GO:0017145|17656722|IMP  go_process proteasomal ubiquitin-dependent protein catabolic process|GO:0043161|15118728|IPI  go_process post-embryonic root development|GO:0048528|17656722|IMP  go_function protein binding, bridging|GO:0030674|15118728|IPI  product ETO1 (ETHYLENE OVERPRODUCER 1); protein binding, bridging  note ETHYLENE OVERPRODUCER 1 (ETO1); FUNCTIONS IN: protein binding, bridging; INVOLVED IN: in 6 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: EOL2 (ETO1-LIKE 2); binding / protein binding (TAIR:AT5G58550.1); Has 968 Blast hits to 796 proteins in 185 species: Archae - 28; Bacteria - 406; Metazoa - 123; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 306 (source: NCBI BLink).  protein_id AT3G51770.1p  transcript_id AT3G51770.1  protein_id AT3G51770.1p  transcript_id AT3G51770.1  
At3g51770	chr3:019201948	0.0	C/19201948-19203998,19201549-19201840,19200951-19201260,19200328-19200554	AT3G51770.2  CDS  gene_syn ETHYLENE OVERPRODUCER 1, ETHYLENE OVERPRODUCER1, ETO1  gene ETO1  function Encodes a negative regulator of 1-aminocyclopropane-1-carboxylic acid synthase5(ACS5), which catalyze the rate-limiting step in ethylene biosynthesis. ETO1 directly interacts with ACS5 and inhibits its enzyme activity and targets it for degradation via proteasome-dependent pathway. It also interacts with CUL3 (a component of ubiquitin ligase complexes). eto1 (and eto3) mutations elevate ethylene biosynthesis by affecting the posttranscriptional regulation of ACS  go_component cellular_component|GO:0005575||ND  go_process ethylene biosynthetic process|GO:0009693||IMP  go_process sugar mediated signaling|GO:0010182|12663220|TAS  go_process regulation of ethylene biosynthetic process|GO:0010364|15118728|IDA  go_process stem cell division|GO:0017145|17656722|IMP  go_process proteasomal ubiquitin-dependent protein catabolic process|GO:0043161|15118728|IPI  go_process post-embryonic root development|GO:0048528|17656722|IMP  go_function protein binding, bridging|GO:0030674|15118728|IPI  product ETO1 (ETHYLENE OVERPRODUCER 1); protein binding, bridging  note ETHYLENE OVERPRODUCER 1 (ETO1); FUNCTIONS IN: protein binding, bridging; INVOLVED IN: in 6 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), BTB/POZ fold (InterPro:IPR011333), Tetratricopeptide region (InterPro:IPR013026), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: EOL2 (ETO1-LIKE 2); binding / protein binding (TAIR:AT5G58550.1); Has 968 Blast hits to 796 proteins in 185 species: Archae - 28; Bacteria - 406; Metazoa - 123; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 306 (source: NCBI BLink).  protein_id AT3G51770.2p  transcript_id AT3G51770.2  protein_id AT3G51770.2p  transcript_id AT3G51770.2  
At3g51780	chr3:019207971	0.0	C/19207971-19208178,19207539-19207795,19207315-19207461,19207029-19207226	AT3G51780.1  CDS  gene_syn ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 4, ATBAG4  gene ATBAG4  function A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. BD domain of ATBAG4 had highest similarity to human DB domain of BAG protein. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.  go_function protein binding|GO:0005515||IEA  go_process apoptosis|GO:0006915||ISS  go_process response to heat|GO:0009408|16636050|IEP  go_process response to cold|GO:0009409|16636050|IEP  go_process response to salt stress|GO:0009651|16636050|IMP  go_process vegetative to reproductive phase transition|GO:0010228|16636050|IMP  go_process regulation of apoptosis|GO:0042981||ISS  go_function protein binding|GO:0005515||ISS  product ATBAG4 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 4); protein binding  note ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 4 (ATBAG4); FUNCTIONS IN: protein binding; INVOLVED IN: in 6 processes; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Apoptosis regulator Bcl-2 protein, BAG (InterPro:IPR003103), Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: ATBAG3 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 3); protein binding (TAIR:AT5G07220.1); Has 172 Blast hits to 172 proteins in 36 species: Archae - 0; Bacteria - 5; Metazoa - 36; Fungi - 10; Plants - 112; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G51780.1p  transcript_id AT3G51780.1  protein_id AT3G51780.1p  transcript_id AT3G51780.1  
At3g51790	chr3:019209893	0.0	C/19209893-19210663	AT3G51790.1  CDS  gene_syn ARABIDOPSIS TRANSMEMBRANE PROTEIN G1P-RELATED 1, ATG1  gene ATG1  function putative transmembrane protein G1p (AtG1) mRNA, complete  go_process cytochrome complex assembly|GO:0017004||IEA  go_process cytochrome complex assembly|GO:0017004||ISS  go_function molecular_function|GO:0003674||ND  product ATG1 (ARABIDOPSIS TRANSMEMBRANE PROTEIN G1P-RELATED 1)  note ARABIDOPSIS TRANSMEMBRANE PROTEIN G1P-RELATED 1 (ATG1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cytochrome complex assembly; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CcmE/CycJ protein (InterPro:IPR004329), Nucleic acid-binding, OB-fold (InterPro:IPR012340); Has 2577 Blast hits to 2577 proteins in 539 species: Archae - 0; Bacteria - 1223; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 1339 (source: NCBI BLink).  protein_id AT3G51790.1p  transcript_id AT3G51790.1  protein_id AT3G51790.1p  transcript_id AT3G51790.1  
At3g51800	chr3:019213475	0.0	C/19213475-19213568,19213281-19213365,19213036-19213185,19212790-19212943,19212088-19212303,19211866-19212002,19211688-19211779,19211426-19211599,19211261-19211337	AT3G51800.1  CDS  gene_syn ATG2  gene ATG2  function putative nuclear DNA-binding protein G2p (AtG2) mRNA,  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process proteolysis|GO:0006508||IEA  go_process cellular process|GO:0009987||IEA  go_function aminopeptidase activity|GO:0004177||IEA  go_function metalloexopeptidase activity|GO:0008235||IEA  go_process proteolysis|GO:0006508||ISS  go_function metalloexopeptidase activity|GO:0008235||ISS  product ATG2; aminopeptidase/ metalloexopeptidase  note ATG2; FUNCTIONS IN: metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis, cellular process; LOCATED IN: nucleolus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24, structural domain (InterPro:IPR000994), Proliferation-associated protein 1 (InterPro:IPR004545), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: MAP2A (METHIONINE AMINOPEPTIDASE 2A); aminopeptidase/ metalloexopeptidase (TAIR:AT2G44180.1); Has 4707 Blast hits to 4704 proteins in 1250 species: Archae - 148; Bacteria - 2478; Metazoa - 403; Fungi - 355; Plants - 114; Viruses - 0; Other Eukaryotes - 1209 (source: NCBI BLink).  protein_id AT3G51800.1p  transcript_id AT3G51800.1  protein_id AT3G51800.1p  transcript_id AT3G51800.1  
At3g51800	chr3:019213475	0.0	C/19213475-19213568,19213281-19213365,19213036-19213185,19212790-19212943,19212088-19212303,19211866-19212002,19211688-19211779,19211426-19211626,19211261-19211337	AT3G51800.2  CDS  gene_syn ATG2  gene ATG2  function putative nuclear DNA-binding protein G2p (AtG2) mRNA,  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process proteolysis|GO:0006508||IEA  go_process cellular process|GO:0009987||IEA  go_function aminopeptidase activity|GO:0004177||IEA  go_function metalloexopeptidase activity|GO:0008235||IEA  go_process proteolysis|GO:0006508||ISS  go_function metalloexopeptidase activity|GO:0008235||ISS  product ATG2; aminopeptidase/ metalloexopeptidase  note ATG2; FUNCTIONS IN: metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis, cellular process; LOCATED IN: nucleolus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24, structural domain (InterPro:IPR000994), Proliferation-associated protein 1 (InterPro:IPR004545), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: MAP2A (METHIONINE AMINOPEPTIDASE 2A); aminopeptidase/ metalloexopeptidase (TAIR:AT2G44180.1); Has 4701 Blast hits to 4698 proteins in 1250 species: Archae - 148; Bacteria - 2478; Metazoa - 403; Fungi - 355; Plants - 114; Viruses - 0; Other Eukaryotes - 1203 (source: NCBI BLink).  protein_id AT3G51800.2p  transcript_id AT3G51800.2  protein_id AT3G51800.2p  transcript_id AT3G51800.2  
At3g51810	chr3:019214818	0.0	W/19214818-19214935,19215121-19215461	AT3G51810.1  CDS  gene_syn ARABIDOPSIS THALIANA LATE EMBRYOGENESIS ABUNDANT 1, AT3, ATEM1, EM1, EM1 PROTEIN, GEA1, GUANINE NUCLEOTIDE EXCHANGE FACTOR FOR ADP RIBOSYLATION FACTORS 1, LATE EMBRYOGENESIS ABUNDANT 1  gene EM1  function Encodes a ABA-inducible protein that accumulates during seed maturation, in parallel with its corresponding mRNA but with a 3 d delay. During germination, AtEm1 protein undergoes two successive cleavages before being degraded. Both proteins are more stable than the corresponding mRNA. The gene can be activated by the basic leucine zipper transcription factor ABI5. Expressed predominantly in provascular tissues with the strongest expression in the root tip.  go_component cellular_component|GO:0005575||ND  go_process response to abscisic acid stimulus|GO:0009737|8492809|TAS  go_process embryonic development ending in seed dormancy|GO:0009793||TAS  go_function molecular_function|GO:0003674||ND  product EM1 (LATE EMBRYOGENESIS ABUNDANT 1)  note LATE EMBRYOGENESIS ABUNDANT 1 (EM1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy, response to abscisic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, seed; EXPRESSED DURING: dry seed stage, seedling growth, seed maturation stage; CONTAINS InterPro DOMAIN/s: Small hydrophilic plant seed protein (InterPro:IPR000389); BEST Arabidopsis thaliana protein match is: GEA6 (LATE EMBRYOGENESIS ABUNDANT 6) (TAIR:AT2G40170.1); Has 949 Blast hits to 437 proteins in 112 species: Archae - 30; Bacteria - 224; Metazoa - 207; Fungi - 20; Plants - 265; Viruses - 11; Other Eukaryotes - 192 (source: NCBI BLink).  protein_id AT3G51810.1p  transcript_id AT3G51810.1  protein_id AT3G51810.1p  transcript_id AT3G51810.1  
At3g51820	chr3:019218784	0.0	C/19218784-19218934,19218658-19218702,19218489-19218574,19218217-19218304,19218049-19218134,19217874-19217960,19217735-19217800,19217577-19217660,19217419-19217480,19217265-19217340,19217031-19217175,19216591-19216667,19216459-19216506,19216301-19216363	AT3G51820.1  CDS  gene_syn ATG4, CHLG, G4  gene G4  function Encodes a protein with chlorophyll synthase activity. This enzyme has been shown to perform the esterification of chlorophyllide (a and b), the last step of chlorophyll biosynthesis. Although it can use either geranylgeranyl pyrophosphate (GGPP) or phytyl pyrophosphate (PhyPP) as substrates, the esterification reaction was faster with GGPP than with PhyPP.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|8552034|TAS  go_process chlorophyll biosynthetic process|GO:0015995||TAS  go_function chlorophyll synthetase activity|GO:0046408||IDA  product G4; chlorophyll synthetase  note G4; FUNCTIONS IN: chlorophyll synthetase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Bacteriochlorophyll/chlorophyll synthetase (InterPro:IPR006372), Chlorophyll synthase, ChlG (InterPro:IPR011799), UbiA prenyltransferase (InterPro:IPR000537); BEST Arabidopsis thaliana protein match is: homogentisate farnesyltransferase/ homogentisate geranylgeranyltransferase/ homogentisate solanesyltransferase (TAIR:AT3G11945.2); Has 1946 Blast hits to 1946 proteins in 482 species: Archae - 214; Bacteria - 1000; Metazoa - 53; Fungi - 16; Plants - 120; Viruses - 0; Other Eukaryotes - 543 (source: NCBI BLink).  protein_id AT3G51820.1p  transcript_id AT3G51820.1  protein_id AT3G51820.1p  transcript_id AT3G51820.1  
At3g51830	chr3:019220237	0.0	W/19220237-19220387,19220523-19220597,19220688-19220815,19220918-19221009,19221090-19221147,19221260-19221316,19221396-19221429,19221568-19221648,19221728-19221834,19222184-19222270,19222352-19222429,19222603-19222667,19222889-19222987,19223137-19223236,19223600-19223708,19223817-19223889,19224222-19224315,19224413-19224496,19224804-19224870,19224965-19225092	AT3G51830.1  CDS  gene_syn ATG5, SAC DOMAIN-CONTAINING PROTEIN 8, SAC8, TRANSMEMBRANE PROTEIN G5P  gene SAC8  function putative transmembrane protein G5p (AtG5) mRNA, complete  go_function phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|GO:0004439||ISS  product ATG5; phosphatidylinositol-4,5-bisphosphate 5-phosphatase  note ATG5; FUNCTIONS IN: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Synaptojanin, N-terminal (InterPro:IPR002013); BEST Arabidopsis thaliana protein match is: RHD4 (ROOT HAIR DEFECTIVE4); phosphatidylinositol-4,5-bisphosphate 5-phosphatase/ phosphatidylinositol-4-phosphate phosphatase (TAIR:AT3G51460.1); Has 1237 Blast hits to 1167 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 460; Fungi - 370; Plants - 156; Viruses - 0; Other Eukaryotes - 251 (source: NCBI BLink).  protein_id AT3G51830.1p  transcript_id AT3G51830.1  protein_id AT3G51830.1p  transcript_id AT3G51830.1  
At3g51840	chr3:019228981	0.0	C/19228981-19229008,19228487-19228591,19228297-19228403,19228123-19228200,19227914-19228037,19227731-19227804,19227562-19227621,19227349-19227458,19226896-19227055,19226698-19226774,19226435-19226606,19225861-19225953,19225653-19225775	AT3G51840.1  CDS  gene_syn ACX4, ACYL-COA OXIDASE 4, ATG6, ATSCX, SHORT-CHAIN ACYL COA OXIDASE  gene ACX4  function Encodes a short-chain acyl-CoA oxidase, which catalyzes the first step of peroxisomal fatty acid beta-oxidation during early, post-germinative growth in oilseed species. Null mutants virtually lack short-chain acyl-CoA and are resistant to 2,4-dichlorophenoxybutyric acid, which is converted to the herbicide and auxin analogue 2,4-dichlorophenoxyacetic acid by beta-oxidation. Despite the almost complete loss of short-chain activity, lipid catabolism and seedling growth and establishment was unaltered in the acx4 mutant. However, double mutants in acx3acx4 (acx3 encodes medium chain acyl CoA oxidase) were not viable and arrested during embryogenesis.  go_component peroxisome|GO:0005777|17951448|IDA  go_component peroxisome|GO:0005777|10212254|IDA  go_process fatty acid beta-oxidation|GO:0006635|10212254|IDA  go_process fatty acid beta-oxidation|GO:0006635|12682048|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|12682048|IGI  go_process short-chain fatty acid metabolic process|GO:0046459|15743450|TAS  go_function acyl-CoA oxidase activity|GO:0003997|10212254|IDA  go_function acyl-CoA oxidase activity|GO:0003997|12682048|IMP  go_function oxidoreductase activity|GO:0016491||ISS  product ACX4 (ACYL-COA OXIDASE 4); acyl-CoA oxidase/ oxidoreductase  note ACYL-COA OXIDASE 4 (ACX4); FUNCTIONS IN: oxidoreductase activity, acyl-CoA oxidase activity; INVOLVED IN: embryonic development ending in seed dormancy, fatty acid beta-oxidation, short-chain fatty acid metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal (InterPro:IPR013764), Acyl-CoA oxidase/dehydrogenase, type 1 (InterPro:IPR006090), Acyl-CoA dehydrogenase/oxidase, middle and N-terminal (InterPro:IPR009100), Acyl-CoA dehydrogenase/oxidase, N-terminal (InterPro:IPR013786), Acyl-CoA dehydrogenase/oxidase, central region (InterPro:IPR006091), Acyl-CoA dehydrogenase, conserved site (InterPro:IPR006089), Acyl-CoA dehydrogenase/oxidase C-terminal (InterPro:IPR009075), Acyl-CoA dehydrogenase, N-terminal (InterPro:IPR006092); BEST Arabidopsis thaliana protein match is: IVD (ISOVALERYL-COA-DEHYDROGENASE); ATP binding / isovaleryl-CoA dehydrogenase (TAIR:AT3G45300.1); Has 25444 Blast hits to 25413 proteins in 1142 species: Archae - 245; Bacteria - 13843; Metazoa - 1454; Fungi - 515; Plants - 195; Viruses - 0; Other Eukaryotes - 9192 (source: NCBI BLink).  protein_id AT3G51840.1p  transcript_id AT3G51840.1  protein_id AT3G51840.1p  transcript_id AT3G51840.1  
At3g51850	chr3:019232667	0.0	W/19232667-19233291,19233501-19233644,19233799-19233951,19234097-19234212,19234303-19234470,19234666-19234896,19235377-19235526	AT3G51850.1  CDS  gene_syn CALCIUM-DEPENDENT PROTEIN KINASE 13, CPK13  gene CPK13  function member of Calcium Dependent Protein Kinase  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  go_function kinase activity|GO:0016301||ISS  product CPK13; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note CPK13; FUNCTIONS IN: in 7 functions; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), Tyrosine protein kinase (InterPro:IPR001245), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: ATCDPK1 (CALCIUM-DEPENDENT PROTEIN KINASE 1); calmodulin-dependent protein kinase/ kinase/ protein kinase (TAIR:AT1G18890.1); Has 93361 Blast hits to 88446 proteins in 2616 species: Archae - 70; Bacteria - 7731; Metazoa - 40158; Fungi - 11733; Plants - 14547; Viruses - 368; Other Eukaryotes - 18754 (source: NCBI BLink).  protein_id AT3G51850.1p  transcript_id AT3G51850.1  protein_id AT3G51850.1p  transcript_id AT3G51850.1  
At3g51860	chr3:019239458	0.0	W/19239458-19239742,19240226-19240293,19240649-19240677,19240771-19240967,19241178-19241399,19241469-19241606,19241698-19241814,19242009-19242062,19242168-19242284,19242367-19242519	AT3G51860.1  CDS  gene_syn ATCAX3, ATHCX1, CALCIUM/PROTON EXCHANGER CAX1-LIKE PROTEIN, CATION EXCHANGER 3, CAX1-LIKE, CAX3  gene CAX3  go_component vacuole|GO:0005773|16055687|IDA  go_component vacuolar membrane|GO:0005774|16055687|IDA  go_component plant-type vacuole membrane|GO:0009705|11562366|IDA  go_process phosphorus metabolic process|GO:0006793|16055687|IGI  go_process cation transport|GO:0006812||ISS  go_process sodium ion transport|GO:0006814|16055687|IGI  go_process cellular calcium ion homeostasis|GO:0006874|16055687|IGI  go_process cellular zinc ion homeostasis|GO:0006882|16055687|IGI  go_process response to nematode|GO:0009624|16478044|IEP  go_process lithium ion transport|GO:0010351|16055687|IGI  go_process cellular manganese ion homeostasis|GO:0030026|16055687|IGI  go_process response to calcium ion|GO:0051592|16055687|IMP  go_function calcium:cation antiporter activity|GO:0015368||ISS  go_function calcium:hydrogen antiporter activity|GO:0015369|11562366|ISS  go_function calcium:hydrogen antiporter activity|GO:0015369|16055687|IDA  go_function calcium:hydrogen antiporter activity|GO:0015369|16055687|IMP  go_function cation:cation antiporter activity|GO:0015491|11500563|NAS  go_function cation:cation antiporter activity|GO:0015491||ISS  product CAX3 (CATION EXCHANGER 3); calcium:cation antiporter/ calcium:hydrogen antiporter/ cation:cation antiporter  note CATION EXCHANGER 3 (CAX3); FUNCTIONS IN: cation:cation antiporter activity, calcium:cation antiporter activity, calcium:hydrogen antiporter activity; INVOLVED IN: in 9 processes; LOCATED IN: plant-type vacuole membrane, vacuolar membrane, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sodium/calcium exchanger membrane region (InterPro:IPR004837), Calcium/proton exchanger superfamily (InterPro:IPR004798), Calcium/proton exchanger (InterPro:IPR004713); BEST Arabidopsis thaliana protein match is: CAX1 (cation exchanger 1); calcium ion transmembrane transporter/ calcium:cation antiporter/ calcium:hydrogen antiporter (TAIR:AT2G38170.1); Has 2400 Blast hits to 2283 proteins in 629 species: Archae - 20; Bacteria - 1370; Metazoa - 16; Fungi - 476; Plants - 160; Viruses - 0; Other Eukaryotes - 358 (source: NCBI BLink).  protein_id AT3G51860.1p  transcript_id AT3G51860.1  protein_id AT3G51860.1p  transcript_id AT3G51860.1  
At3g51870	chr3:019243978	0.0	W/19243978-19244325,19244451-19244507,19244600-19244662,19244750-19244806,19245127-19245210,19245596-19245664,19245742-19245854,19245943-19246112,19246259-19246337,19246506-19246611	AT3G51870.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process response to nematode|GO:0009624|16478044|IEP  go_function transporter activity|GO:0005215||ISS  go_function binding|GO:0005488||ISS  product binding / transporter  note binding / transporter; FUNCTIONS IN: transporter activity, binding; INVOLVED IN: transport, response to nematode; LOCATED IN: mitochondrial inner membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: mitochondrial substrate carrier family protein (TAIR:AT5G01500.1); Has 19771 Blast hits to 10112 proteins in 366 species: Archae - 0; Bacteria - 0; Metazoa - 9880; Fungi - 5333; Plants - 2663; Viruses - 5; Other Eukaryotes - 1890 (source: NCBI BLink).  protein_id AT3G51870.1p  transcript_id AT3G51870.1  protein_id AT3G51870.1p  transcript_id AT3G51870.1  
At3g51880	chr3:019248424	0.0	C/19248424-19248491,19248061-19248183,19247906-19247963,19247767-19247811,19247601-19247681,19247436-19247525,19247241-19247333	AT3G51880.2  CDS  gene_syn HIGH MOBILITY GROUP B 1, HMGB1, NFD1, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1  gene HMGB1  function Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. In interphase cells, HMGB1 is found throughout the nucleus, whereas in mitotic cells it is not chromatin-associated.  go_component chromatin|GO:0000785|12653554|TAS  go_component nuclear chromatin|GO:0000790|17114349|IDA  go_component nucleus|GO:0005634|17114349|IDA  go_component cytosol|GO:0005829|17114349|IDA  go_process chromatin assembly or disassembly|GO:0006333|12653554|TAS  go_function DNA binding|GO:0003677|9461286|IDA  go_function DNA binding|GO:0003677|9461286|ISS  go_function chromatin binding|GO:0003682|12653554|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function structural constituent of chromatin|GO:0030527|12653554|TAS  product HMGB1 (HIGH MOBILITY GROUP B 1); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor  note HIGH MOBILITY GROUP B 1 (HMGB1); FUNCTIONS IN: chromatin binding, transcription factor activity, structural constituent of chromatin, DNA binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: nuclear chromatin, chromatin, cytosol, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: HMGB3 (HIGH MOBILITY GROUP B 3); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor (TAIR:AT1G20696.3); Has 15244 Blast hits to 9644 proteins in 494 species: Archae - 8; Bacteria - 281; Metazoa - 7788; Fungi - 1624; Plants - 792; Viruses - 218; Other Eukaryotes - 4533 (source: NCBI BLink).  protein_id AT3G51880.2p  transcript_id AT3G51880.2  protein_id AT3G51880.2p  transcript_id AT3G51880.2  
At3g51880	chr3:019248424	0.0	C/19248424-19248491,19248061-19248183,19247906-19247963,19247767-19247811,19247601-19247681,19247457-19247525,19247241-19247333	AT3G51880.1  CDS  gene_syn HIGH MOBILITY GROUP B 1, HMGB1, NFD1, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1  gene HMGB1  function Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. In interphase cells, HMGB1 is found throughout the nucleus, whereas in mitotic cells it is not chromatin-associated.  go_component chromatin|GO:0000785|12653554|TAS  go_component nuclear chromatin|GO:0000790|17114349|IDA  go_component nucleus|GO:0005634|17114349|IDA  go_component cytosol|GO:0005829|17114349|IDA  go_process chromatin assembly or disassembly|GO:0006333|12653554|TAS  go_function DNA binding|GO:0003677|9461286|IDA  go_function DNA binding|GO:0003677|9461286|ISS  go_function chromatin binding|GO:0003682|12653554|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function structural constituent of chromatin|GO:0030527|12653554|TAS  product HMGB1 (HIGH MOBILITY GROUP B 1); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor  note HIGH MOBILITY GROUP B 1 (HMGB1); FUNCTIONS IN: chromatin binding, transcription factor activity, structural constituent of chromatin, DNA binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: nuclear chromatin, chromatin, cytosol, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: HMGB3 (HIGH MOBILITY GROUP B 3); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor (TAIR:AT1G20696.3); Has 22896 Blast hits to 12639 proteins in 616 species: Archae - 20; Bacteria - 558; Metazoa - 11398; Fungi - 2358; Plants - 1129; Viruses - 394; Other Eukaryotes - 7039 (source: NCBI BLink).  protein_id AT3G51880.1p  transcript_id AT3G51880.1  protein_id AT3G51880.1p  transcript_id AT3G51880.1  
At3g51880	chr3:019248424	0.0	C/19248424-19248491,19248061-19248183,19247906-19247963,19247767-19247811,19247601-19247681,19247457-19247525,19247241-19247333	AT3G51880.3  CDS  gene_syn HIGH MOBILITY GROUP B 1, HMGB1, NFD1, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1  gene HMGB1  function Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. In interphase cells, HMGB1 is found throughout the nucleus, whereas in mitotic cells it is not chromatin-associated.  go_component chromatin|GO:0000785|12653554|TAS  go_component nuclear chromatin|GO:0000790|17114349|IDA  go_component nucleus|GO:0005634|17114349|IDA  go_component cytosol|GO:0005829|17114349|IDA  go_process chromatin assembly or disassembly|GO:0006333|12653554|TAS  go_function DNA binding|GO:0003677|9461286|IDA  go_function DNA binding|GO:0003677|9461286|ISS  go_function chromatin binding|GO:0003682|12653554|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function structural constituent of chromatin|GO:0030527|12653554|TAS  product HMGB1 (HIGH MOBILITY GROUP B 1); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor  note HIGH MOBILITY GROUP B 1 (HMGB1); FUNCTIONS IN: chromatin binding, transcription factor activity, structural constituent of chromatin, DNA binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: nuclear chromatin, chromatin, cytosol, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: HMGB3 (HIGH MOBILITY GROUP B 3); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor (TAIR:AT1G20696.3); Has 22896 Blast hits to 12639 proteins in 616 species: Archae - 20; Bacteria - 558; Metazoa - 11398; Fungi - 2358; Plants - 1129; Viruses - 394; Other Eukaryotes - 7039 (source: NCBI BLink).  protein_id AT3G51880.3p  transcript_id AT3G51880.3  protein_id AT3G51880.3p  transcript_id AT3G51880.3  
At3g51890	chr3:019250577	0.0	C/19250577-19250890,19250086-19250239,19249686-19249994	AT3G51890.1  CDS  go_component clathrin coat of trans-Golgi network vesicle|GO:0030130||IEA  go_component clathrin coat of coated pit|GO:0030132||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function structural molecule activity|GO:0005198||IEA  go_function protein binding|GO:0005515||IEA  product protein binding / structural molecule  note protein binding / structural molecule; FUNCTIONS IN: protein binding, structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: clathrin coat of trans-Golgi network vesicle, clathrin coat of coated pit; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin light chain (InterPro:IPR000996); BEST Arabidopsis thaliana protein match is: protein binding / structural molecule (TAIR:AT2G40060.1); Has 258 Blast hits to 256 proteins in 83 species: Archae - 0; Bacteria - 2; Metazoa - 126; Fungi - 42; Plants - 56; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT3G51890.1p  transcript_id AT3G51890.1  protein_id AT3G51890.1p  transcript_id AT3G51890.1  
At3g51895	chr3:019255332	0.0	C/19255332-19255677,19255000-19255207,19254137-19254308,19253918-19253983,19253565-19253678,19253140-19253256,19252816-19252942,19252438-19252724,19252112-19252302,19251944-19252029,19251771-19251847,19251503-19251688	AT3G51895.1  CDS  gene_syn AST12, SULFATE TRANSPORTER 1, SULFATE TRANSPORTER 3;1, SULTR3;1  gene SULTR3;1  function Encodes a sulfate transporter.  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process sulfate transport|GO:0008272||IEA  go_function transporter activity|GO:0005215||IEA  go_function secondary active sulfate transmembrane transporter activity|GO:0008271||IEA  go_process sulfate transport|GO:0008272||ISS  go_function sulfate transmembrane transporter activity|GO:0015116||ISS  product SULTR3;1 (SULFATE TRANSPORTER 3;1); secondary active sulfate transmembrane transporter/ sulfate transmembrane transporter/ transporter  note SULFATE TRANSPORTER 3;1 (SULTR3;1); FUNCTIONS IN: secondary active sulfate transmembrane transporter activity, transporter activity, sulfate transmembrane transporter activity; INVOLVED IN: sulfate transport, transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sulphate transporter (InterPro:IPR011547), Sulphate transporter/antisigma-factor antagonist STAS (InterPro:IPR002645), Sulphate anion transporter, conserved site (InterPro:IPR018045), Sulphate anion transporter (InterPro:IPR001902); BEST Arabidopsis thaliana protein match is: SULTR3;2 (sulfate transporter 3;2); sulfate transmembrane transporter (TAIR:AT4G02700.1); Has 6777 Blast hits to 6716 proteins in 1094 species: Archae - 34; Bacteria - 3452; Metazoa - 989; Fungi - 286; Plants - 322; Viruses - 0; Other Eukaryotes - 1694 (source: NCBI BLink).  protein_id AT3G51895.1p  transcript_id AT3G51895.1  protein_id AT3G51895.1p  transcript_id AT3G51895.1  
At3g51910	chr3:019265294	0.0	W/19265294-19265557,19266065-19266619	AT3G51910.1  CDS  gene_syn ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A7A, AT-HSFA7A, HEAT SHOCK TRANSCRIPTION FACTOR A7A, HSFA7A  gene HSFA7A  function member of Heat Stress Transcription Factor (Hsf) family  go_component nucleus|GO:0005634||IEA  go_process response to heat|GO:0009408|15247379|IEP  go_process response to high light intensity|GO:0009644|17059409|IEP  go_process regulation of cellular protein metabolic process|GO:0032268|19244141|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AT-HSFA7A; DNA binding / transcription factor  note AT-HSFA7A; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to high light intensity, response to heat, regulation of cellular protein metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: AT-HSFA7B; DNA binding / transcription factor (TAIR:AT3G63350.1); Has 1369 Blast hits to 1364 proteins in 163 species: Archae - 0; Bacteria - 11; Metazoa - 307; Fungi - 324; Plants - 458; Viruses - 0; Other Eukaryotes - 269 (source: NCBI BLink).  protein_id AT3G51910.1p  transcript_id AT3G51910.1  protein_id AT3G51910.1p  transcript_id AT3G51910.1  
At3g51915	chr3:019267700	0.0	C/19267700-19267784,19267234-19267331	AT3G51915.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT3G51915.1p  transcript_id AT3G51915.1  protein_id AT3G51915.1p  transcript_id AT3G51915.1  
At3g51920	chr3:019269239	0.0	C/19269239-19269314,19268985-19269145,19268817-19268894,19268178-19268318	AT3G51920.1  CDS  gene_syn CALMODULIN 9, CALMODULIN LIKE PROTEIN 9, CAM9, CML9  gene CAM9  function encodes a divergent member of calmodulin, which is an EF-hand family of Ca2+-binding proteins. This gene is expressed in leaves, flowers and siliques. The gene functionally complements yeast calmodulin 1 (CAM1) but only when selected against the plasmid harboring wild-type yeast sequences. Also the protein does not form formed a complex with a basic amphiphilic helical peptide in the presence of Ca2+ in vitro. Authors suggest that this gene may represent a Ca2+-binding sensor protein that interacts with a more limited set of target proteins than do more conventional CaM isoforms. Mutations in this gene alter plant responses to abiotic stress and abscisic acid.  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_process detection of calcium ion|GO:0005513|11855649|ISS  go_process response to water deprivation|GO:0009414|18643966|IMP  go_process response to salt stress|GO:0009651|18643966|IMP  go_process response to abscisic acid stimulus|GO:0009737|18643966|IMP  go_process calcium-mediated signaling|GO:0019722|11855649|IGI  go_function calcium ion binding|GO:0005509||ISS  product CAM9 (CALMODULIN 9); calcium ion binding  note CALMODULIN 9 (CAM9); FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to water deprivation, response to salt stress, detection of calcium ion, calcium-mediated signaling, response to abscisic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: CAM1 (CALMODULIN 1); calcium ion binding (TAIR:AT5G37780.1); Has 17416 Blast hits to 13182 proteins in 1279 species: Archae - 0; Bacteria - 59; Metazoa - 7582; Fungi - 4536; Plants - 2801; Viruses - 0; Other Eukaryotes - 2438 (source: NCBI BLink).  protein_id AT3G51920.1p  transcript_id AT3G51920.1  protein_id AT3G51920.1p  transcript_id AT3G51920.1  
At3g51930	chr3:019271672	0.0	W/19271672-19272919	AT3G51930.1  CDS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT2G26490.1); Has 13850 Blast hits to 8647 proteins in 450 species: Archae - 22; Bacteria - 2402; Metazoa - 5458; Fungi - 2876; Plants - 1125; Viruses - 0; Other Eukaryotes - 1967 (source: NCBI BLink).  protein_id AT3G51930.1p  transcript_id AT3G51930.1  protein_id AT3G51930.1p  transcript_id AT3G51930.1  
At3g51940	chr3:019275070	0.0	C/19275070-19275157,19273708-19274981	AT3G51940.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G03990.1); Has 134 Blast hits to 107 proteins in 33 species: Archae - 0; Bacteria - 32; Metazoa - 27; Fungi - 16; Plants - 34; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT3G51940.1p  transcript_id AT3G51940.1  protein_id AT3G51940.1p  transcript_id AT3G51940.1  
At3g51950	chr3:019279734	0.0	C/19279734-19280407,19279470-19279634,19279196-19279381,19279041-19279108,19278667-19278955,19278410-19278589,19278244-19278304	AT3G51950.1  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein  note zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT3G63450.2); Has 123 Blast hits to 104 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 2; Plants - 110; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G51950.1p  transcript_id AT3G51950.1  protein_id AT3G51950.1p  transcript_id AT3G51950.1  
At3g51950	chr3:019279734	0.0	C/19279734-19280407,19279470-19279634,19279196-19279381,19279041-19279108,19278667-19278955,19278410-19278589,19278244-19278304	AT3G51950.2  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein  note zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT3G63450.2); Has 123 Blast hits to 104 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 2; Plants - 110; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G51950.2p  transcript_id AT3G51950.2  protein_id AT3G51950.2p  transcript_id AT3G51950.2  
At3g51960	chr3:019284006	0.0	C/19284006-19284064,19283654-19283849,19283262-19283565,19282828-19282952	AT3G51960.1  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  product bZIP family transcription factor  note bZIP family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT2G16770.1); Has 91 Blast hits to 91 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 6; Plants - 78; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G51960.1p  transcript_id AT3G51960.1  protein_id AT3G51960.1p  transcript_id AT3G51960.1  
At3g51960	chr3:019284006	0.0	C/19284006-19284064,19283654-19283849,19283262-19283568,19282828-19282952	AT3G51960.2  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  product bZIP family transcription factor  note bZIP family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT2G16770.1); Has 91 Blast hits to 91 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 17; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G51960.2p  transcript_id AT3G51960.2  protein_id AT3G51960.2p  transcript_id AT3G51960.2  
At3g51970	chr3:019284420	0.0	W/19284420-19285457	AT3G51970.1  CDS  gene_syn Arabidopsis thaliana sterol O-acyltransferase 1, AtSAT1  gene AtSAT1  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function acyltransferase activity|GO:0008415||ISS  product AtSAT1 (Arabidopsis thaliana sterol O-acyltransferase 1); acyltransferase  note Arabidopsis thaliana sterol O-acyltransferase 1 (AtSAT1); FUNCTIONS IN: acyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Wax synthase (InterPro:IPR017088); BEST Arabidopsis thaliana protein match is: long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein (TAIR:AT5G55340.1); Has 427 Blast hits to 425 proteins in 122 species: Archae - 0; Bacteria - 242; Metazoa - 0; Fungi - 24; Plants - 114; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT3G51970.1p  transcript_id AT3G51970.1  protein_id AT3G51970.1p  transcript_id AT3G51970.1  
At3g51980	chr3:019287283	0.0	C/19287283-19287502,19287113-19287204,19286886-19287036,19286650-19286777,19286396-19286554,19286121-19286306,19285811-19286023	AT3G51980.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein (TAIR:AT3G09350.1); Has 470 Blast hits to 470 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 227; Fungi - 113; Plants - 80; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT3G51980.1p  transcript_id AT3G51980.1  protein_id AT3G51980.1p  transcript_id AT3G51980.1  
At3g51990	chr3:019287989	0.0	W/19287989-19289077	AT3G51990.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G28390.1); Has 79739 Blast hits to 78968 proteins in 3126 species: Archae - 60; Bacteria - 6820; Metazoa - 35549; Fungi - 6114; Plants - 17567; Viruses - 401; Other Eukaryotes - 13228 (source: NCBI BLink).  protein_id AT3G51990.1p  transcript_id AT3G51990.1  protein_id AT3G51990.1p  transcript_id AT3G51990.1  
At3g52000	chr3:019293071	0.0	W/19293071-19293416,19293496-19293600,19293705-19294702	AT3G52000.1  CDS  gene_syn scpl36, serine carboxypeptidase-like 36  gene scpl36  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl36 (serine carboxypeptidase-like 36); serine-type carboxypeptidase  note serine carboxypeptidase-like 36 (scpl36); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl37 (serine carboxypeptidase-like 37); serine-type carboxypeptidase (TAIR:AT3G52010.1); Has 2834 Blast hits to 2786 proteins in 356 species: Archae - 0; Bacteria - 431; Metazoa - 575; Fungi - 569; Plants - 881; Viruses - 0; Other Eukaryotes - 378 (source: NCBI BLink).  protein_id AT3G52000.1p  transcript_id AT3G52000.1  protein_id AT3G52000.1p  transcript_id AT3G52000.1  
At3g52003	chr3:019295209	0.0	W/19295209-19295436	AT3G52003.1  pseudogenic_transcript  pseudo  function pseudogene of TON1 microtubule organization protein  
At3g52010	chr3:019296244	0.0	W/19296244-19296592,19296711-19296815,19296919-19297928	AT3G52010.1  CDS  gene_syn scpl37, serine carboxypeptidase-like 37  gene scpl37  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl37 (serine carboxypeptidase-like 37); serine-type carboxypeptidase  note serine carboxypeptidase-like 37 (scpl37); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl36 (serine carboxypeptidase-like 36); serine-type carboxypeptidase (TAIR:AT3G52000.1); Has 2494 Blast hits to 2435 proteins in 263 species: Archae - 0; Bacteria - 109; Metazoa - 575; Fungi - 567; Plants - 892; Viruses - 0; Other Eukaryotes - 351 (source: NCBI BLink).  protein_id AT3G52010.1p  transcript_id AT3G52010.1  protein_id AT3G52010.1p  transcript_id AT3G52010.1  
At3g52020	chr3:019299309	0.0	W/19299309-19299699,19299845-19299949,19300067-19301076	AT3G52020.1  CDS  gene_syn scpl39, serine carboxypeptidase-like 39  gene scpl39  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl39 (serine carboxypeptidase-like 39); serine-type carboxypeptidase  note serine carboxypeptidase-like 39 (scpl39); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl40 (serine carboxypeptidase-like 40); serine-type carboxypeptidase (TAIR:AT3G63470.1); Has 2792 Blast hits to 2730 proteins in 367 species: Archae - 0; Bacteria - 360; Metazoa - 586; Fungi - 560; Plants - 907; Viruses - 0; Other Eukaryotes - 379 (source: NCBI BLink).  protein_id AT3G52020.1p  transcript_id AT3G52020.1  protein_id AT3G52020.1p  transcript_id AT3G52020.1  
At3g52030	chr3:019301872	0.0	W/19301872-19302029,19302118-19302318,19302406-19302460,19302551-19302649,19302865-19303031,19303227-19303316,19303474-19303616,19303686-19303770,19303861-19304227	AT3G52030.1  CDS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function molecular_function|GO:0003674||ND  product F-box family protein / WD-40 repeat family protein  note F-box family protein / WD-40 repeat family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); Has 450 Blast hits to 441 proteins in 109 species: Archae - 0; Bacteria - 30; Metazoa - 277; Fungi - 69; Plants - 35; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT3G52030.1p  transcript_id AT3G52030.1  protein_id AT3G52030.1p  transcript_id AT3G52030.1  
At3g52040	chr3:019304712	0.0	C/19304712-19304802,19304583-19304635,19304368-19304496	AT3G52040.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 21 Blast hits to 21 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G52040.1p  transcript_id AT3G52040.1  protein_id AT3G52040.1p  transcript_id AT3G52040.1  
At3g52050	chr3:019305159	0.0	W/19305159-19305353,19305583-19305796,19305884-19305963,19306175-19306213,19306334-19306352,19307082-19307135,19307795-19307922,19308002-19308070,19308185-19308270,19308401-19308510,19308690-19308740,19308825-19308883,19308975-19309019,19309110-19309184,19309276-19309398	AT3G52050.3  CDS  go_function DNA binding|GO:0003677||IEA  go_function catalytic activity|GO:0003824||IEA  go_function 5 -3  exonuclease activity|GO:0008409||IEA  go_function catalytic activity|GO:0003824||ISS  product 5 -3  exonuclease family protein  note 5 -3  exonuclease family protein; FUNCTIONS IN: 5 -3  exonuclease activity, DNA binding, catalytic activity; CONTAINS InterPro DOMAIN/s: 5&apos;-3&apos; exonuclease (InterPro:IPR002421), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918); BEST Arabidopsis thaliana protein match is: 5 -3  exonuclease family protein (TAIR:AT1G34380.2); Has 6752 Blast hits to 6747 proteins in 1396 species: Archae - 3; Bacteria - 3268; Metazoa - 5; Fungi - 10; Plants - 48; Viruses - 26; Other Eukaryotes - 3392 (source: NCBI BLink).  protein_id AT3G52050.3p  transcript_id AT3G52050.3  protein_id AT3G52050.3p  transcript_id AT3G52050.3  
At3g52050	chr3:019305159	0.0	W/19305159-19305353,19305583-19305796,19305884-19305963,19306175-19306213,19306334-19306352,19307795-19307922,19308002-19308070,19308185-19308270,19308401-19308510,19308690-19308740,19308825-19308931	AT3G52050.5  CDS  go_function DNA binding|GO:0003677||IEA  go_function catalytic activity|GO:0003824||IEA  go_function 5 -3  exonuclease activity|GO:0008409||IEA  go_function catalytic activity|GO:0003824||ISS  product 5 -3  exonuclease family protein  note 5 -3  exonuclease family protein; FUNCTIONS IN: 5 -3  exonuclease activity, DNA binding, catalytic activity; CONTAINS InterPro DOMAIN/s: 5 -3  exonuclease (InterPro:IPR002421), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918); BEST Arabidopsis thaliana protein match is: 5 -3  exonuclease family protein (TAIR:AT1G34380.2).  protein_id AT3G52050.5p  transcript_id AT3G52050.5  protein_id AT3G52050.5p  transcript_id AT3G52050.5  
At3g52050	chr3:019305228	0.0	W/19305228-19305353,19305583-19305796,19305884-19305963,19306175-19306213,19306334-19306352,19307082-19307135,19307795-19307922,19308002-19308070,19308185-19308270,19308401-19308510,19308690-19308740,19308825-19308883,19308975-19309019,19309110-19309184,19309276-19309398	AT3G52050.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_function DNA binding|GO:0003677||IEA  go_function catalytic activity|GO:0003824||IEA  go_function 5 -3  exonuclease activity|GO:0008409||IEA  go_function catalytic activity|GO:0003824||ISS  product 5 -3  exonuclease family protein  note 5 -3  exonuclease family protein; FUNCTIONS IN: 5 -3  exonuclease activity, DNA binding, catalytic activity; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: 5&apos;-3&apos; exonuclease (InterPro:IPR002421), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918); BEST Arabidopsis thaliana protein match is: 5 -3  exonuclease family protein (TAIR:AT1G34380.2); Has 6752 Blast hits to 6747 proteins in 1396 species: Archae - 3; Bacteria - 3268; Metazoa - 5; Fungi - 10; Plants - 48; Viruses - 26; Other Eukaryotes - 3392 (source: NCBI BLink).  protein_id AT3G52050.1p  transcript_id AT3G52050.1  protein_id AT3G52050.1p  transcript_id AT3G52050.1  
At3g52050	chr3:019305228	0.0	W/19305228-19305353,19305583-19305796,19305884-19305963,19306175-19306213,19306334-19306352,19307082-19307135,19307795-19307922,19308002-19308070,19308185-19308270,19308401-19308510,19308690-19308740,19308825-19308883,19308975-19309019,19309110-19309184,19309276-19309398	AT3G52050.2  CDS  go_component mitochondrion|GO:0005739||IEA  go_function DNA binding|GO:0003677||IEA  go_function catalytic activity|GO:0003824||IEA  go_function 5 -3  exonuclease activity|GO:0008409||IEA  go_function catalytic activity|GO:0003824||ISS  product 5 -3  exonuclease family protein  note 5 -3  exonuclease family protein; FUNCTIONS IN: 5 -3  exonuclease activity, DNA binding, catalytic activity; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: 5&apos;-3&apos; exonuclease (InterPro:IPR002421), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918); BEST Arabidopsis thaliana protein match is: 5 -3  exonuclease family protein (TAIR:AT1G34380.2); Has 6752 Blast hits to 6747 proteins in 1396 species: Archae - 3; Bacteria - 3268; Metazoa - 5; Fungi - 10; Plants - 48; Viruses - 26; Other Eukaryotes - 3392 (source: NCBI BLink).  protein_id AT3G52050.2p  transcript_id AT3G52050.2  protein_id AT3G52050.2p  transcript_id AT3G52050.2  
At3g52050	chr3:019305228	0.0	W/19305228-19305353,19305583-19305796,19305884-19305963,19306175-19306213,19306334-19306352,19307118-19307135,19307795-19307922,19308002-19308070,19308185-19308270,19308401-19308510,19308690-19308740,19308825-19308883,19308975-19309019,19309110-19309184,19309276-19309398	AT3G52050.4  CDS  go_component mitochondrion|GO:0005739||IEA  go_function DNA binding|GO:0003677||IEA  go_function catalytic activity|GO:0003824||IEA  go_function 5 -3  exonuclease activity|GO:0008409||IEA  go_function catalytic activity|GO:0003824||ISS  product 5 -3  exonuclease family protein  note 5 -3  exonuclease family protein; FUNCTIONS IN: 5 -3  exonuclease activity, DNA binding, catalytic activity; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: 5 -3  exonuclease (InterPro:IPR002421), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918); BEST Arabidopsis thaliana protein match is: 5 -3  exonuclease family protein (TAIR:AT1G34380.2); Has 6795 Blast hits to 6788 proteins in 1392 species: Archae - 3; Bacteria - 3268; Metazoa - 5; Fungi - 2; Plants - 48; Viruses - 26; Other Eukaryotes - 3443 (source: NCBI BLink).  protein_id AT3G52050.4p  transcript_id AT3G52050.4  protein_id AT3G52050.4p  transcript_id AT3G52050.4  
At3g52055	chr3:019310059	0.0	C/19310059-19310362	AT3G52055.1  pseudogenic_transcript  pseudo  function Encodes a Plantacyanin/Basic blue family protein [pseudogene]  
At3g52060	chr3:019310987	0.0	C/19310987-19312027	AT3G52060.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF266, plant (InterPro:IPR004949); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22070.1); Has 327 Blast hits to 327 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 304; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT3G52060.1p  transcript_id AT3G52060.1  protein_id AT3G52060.1p  transcript_id AT3G52060.1  
At3g52060	chr3:019310987	0.0	C/19310987-19312027	AT3G52060.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF266, plant (InterPro:IPR004949); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22070.1); Has 327 Blast hits to 327 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 304; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT3G52060.2p  transcript_id AT3G52060.2  protein_id AT3G52060.2p  transcript_id AT3G52060.2  
At3g52072	chr3:019312684	0.0	C/19312684-19314577	AT3G52072.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT3G52070  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G52072.1  
At3g52070	chr3:019312753	0.0	W/19312753-19313093,19313260-19313260	AT3G52070.2  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 13 Blast hits to 13 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G52070.2p  transcript_id AT3G52070.2  protein_id AT3G52070.2p  transcript_id AT3G52070.2  
At3g52070	chr3:019312753	0.0	W/19312753-19313097	AT3G52070.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 13 Blast hits to 13 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G52070.1p  transcript_id AT3G52070.1  protein_id AT3G52070.1p  transcript_id AT3G52070.1  
At3g52072	chr3:019313960	0.0	C/19313960-19314731	AT3G52072.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT3G52070  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G52072.2  
At3g52080	chr3:019315090	0.0	W/19315090-19315260,19315335-19316339,19316433-19317038,19317112-19317735	AT3G52080.1  CDS  gene_syn cation/hydrogen exchanger 28, chx28  gene chx28  function encodes a cation:proton exchanger expressed in pollen  go_component membrane|GO:0016020|17432890|IDA  go_process cation transport|GO:0006812|11500563|IC  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  product chx28 (cation/hydrogen exchanger 28); monovalent cation:proton antiporter  note cation/hydrogen exchanger 28 (chx28); FUNCTIONS IN: monovalent cation:proton antiporter activity; INVOLVED IN: cation transport; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, flower, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: ATCHX15; monovalent cation:proton antiporter/ sodium:hydrogen antiporter (TAIR:AT2G13620.1); Has 1527 Blast hits to 1512 proteins in 472 species: Archae - 111; Bacteria - 966; Metazoa - 0; Fungi - 85; Plants - 231; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).  protein_id AT3G52080.1p  transcript_id AT3G52080.1  protein_id AT3G52080.1p  transcript_id AT3G52080.1  
At3g52090	chr3:019318946	0.0	C/19318946-19318998,19318775-19318864,19318607-19318685,19318227-19318322,19318069-19318101	AT3G52090.1  CDS  gene_syn ATRPB13.6, NRPB11, NRPD11, NRPE11, RNA POLYMERASE II 13.6 KDA SUBUNIT  gene NRPB11  function Non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB11 and the E. oli RNA polymerase alpha subunit.  go_process transcription|GO:0006350||IEA  go_component DNA-directed RNA polymerase IV complex|GO:0000418|19110459|IPI  go_component DNA-directed RNA polymerase II, core complex|GO:0005665|19110459|IPI  go_component DNA-directed RNA polymerase II, holoenzyme|GO:0016591|8617787|IPI  go_component DNA-directed RNA polymerase V complex|GO:0080137|19110459|IPI  go_process transcription|GO:0006350||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899|8617787|ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product NRPB11; DNA binding / DNA-directed RNA polymerase  note NRPB11; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: DNA-directed RNA polymerase V complex, DNA-directed RNA polymerase II, core complex, DNA-directed RNA polymerase II, holoenzyme, DNA-directed RNA polymerase IV complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase Rpb11, 13-16 kDa subunit, conserved site (InterPro:IPR008193), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); BEST Arabidopsis thaliana protein match is: ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT); DNA binding / DNA-directed RNA polymerase/ protein dimerization (TAIR:AT2G29540.2); Has 627 Blast hits to 627 proteins in 167 species: Archae - 22; Bacteria - 0; Metazoa - 211; Fungi - 211; Plants - 54; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).  protein_id AT3G52090.1p  transcript_id AT3G52090.1  protein_id AT3G52090.1p  transcript_id AT3G52090.1  
At3g52100	chr3:019319343	0.0	W/19319343-19319374,19319490-19319829,19319908-19319961,19320103-19320277,19320356-19320405,19320516-19320608,19320689-19320777,19320861-19320939,19321151-19321233,19321340-19321418,19321544-19321922,19322054-19322543,19322626-19322773	AT3G52100.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product PHD finger family protein  note PHD finger family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT3G08020.1); Has 1617 Blast hits to 1505 proteins in 126 species: Archae - 0; Bacteria - 9; Metazoa - 1281; Fungi - 40; Plants - 95; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).  protein_id AT3G52100.1p  transcript_id AT3G52100.1  protein_id AT3G52100.1p  transcript_id AT3G52100.1  
At3g52105	chr3:019323394	0.0	W/19323394-19323606	AT3G52105.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 16 Blast hits to 16 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G52105.1p  transcript_id AT3G52105.1  protein_id AT3G52105.1p  transcript_id AT3G52105.1  
At3g52110	chr3:019325482	0.0	C/19325482-19325632,19325347-19325402,19325180-19325229,19324630-19325085,19324459-19324542,19324195-19324360,19323925-19324050	AT3G52110.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; Has 162 Blast hits to 150 proteins in 47 species: Archae - 0; Bacteria - 7; Metazoa - 35; Fungi - 9; Plants - 16; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT3G52110.1p  transcript_id AT3G52110.1  protein_id AT3G52110.1p  transcript_id AT3G52110.1  
At3g52115	chr3:019326333	0.0	W/19326333-19327449,19327596-19328245	AT3G52115.1  CDS  gene_syn ARABIDOPSIS THALIANA GAMMA RESPONSE GENE 1, ATCOM1, ATGR1, COM1  gene ATGR1  function Induced in response to ionizing radiation, shows basal expression in mitotically active cells and high expression in endoreduplicating cells. May be involved in DNA damage-induced growth arrest. Protein sequence contains a PEST destruction box.  go_process meiotic DNA double-strand break processing|GO:0000706|18007598|IGI  go_process response to DNA damage stimulus|GO:0006974|11023598|IEP  go_process gamete generation|GO:0007276|18007598|IMP  go_process response to ionizing radiation|GO:0010212|11023598|IEP  product ATGR1 (ARABIDOPSIS THALIANA GAMMA RESPONSE GENE 1)  note ARABIDOPSIS THALIANA GAMMA RESPONSE GENE 1 (ATGR1); INVOLVED IN: meiotic DNA double-strand break processing, response to ionizing radiation, gamete generation, response to DNA damage stimulus; EXPRESSED IN: bud, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: DNA repair protein Sae2/CtIP (InterPro:IPR013882); BEST Arabidopsis thaliana protein match is: protein transport protein-related (TAIR:AT5G52280.1); Has 21644 Blast hits to 13620 proteins in 822 species: Archae - 315; Bacteria - 1493; Metazoa - 12610; Fungi - 1407; Plants - 578; Viruses - 76; Other Eukaryotes - 5165 (source: NCBI BLink).  protein_id AT3G52115.1p  transcript_id AT3G52115.1  protein_id AT3G52115.1p  transcript_id AT3G52115.1  
At3g52120	chr3:019329243	0.0	W/19329243-19329630,19330107-19330233,19330367-19330473,19330680-19330841,19330930-19331076,19331153-19331347,19331455-19331633,19331712-19331738	AT3G52120.1  CDS  go_component intracellular|GO:0005622||IEA  go_process RNA processing|GO:0006396||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_component intracellular|GO:0005622||ISS  go_process RNA processing|GO:0006396||ISS  go_function nucleic acid binding|GO:0003676||ISS  go_function RNA binding|GO:0003723||ISS  product SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein  note SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061), D111/G-patch (InterPro:IPR000467); BEST Arabidopsis thaliana protein match is: D111/G-patch domain-containing protein (TAIR:AT3G52350.1); Has 1163 Blast hits to 1052 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 893; Fungi - 94; Plants - 131; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT3G52120.1p  transcript_id AT3G52120.1  protein_id AT3G52120.1p  transcript_id AT3G52120.1  
At3g52120	chr3:019329243	0.0	W/19329243-19329630,19330107-19330233,19330367-19330473,19330680-19330841,19330930-19331076,19331153-19331466	AT3G52120.2  CDS  go_component intracellular|GO:0005622||IEA  go_process RNA processing|GO:0006396||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_component intracellular|GO:0005622||ISS  go_process RNA processing|GO:0006396||ISS  go_function nucleic acid binding|GO:0003676||ISS  go_function RNA binding|GO:0003723||ISS  product SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein  note SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061), D111/G-patch (InterPro:IPR000467); Has 408 Blast hits to 361 proteins in 64 species: Archae - 0; Bacteria - 0; Metazoa - 315; Fungi - 10; Plants - 67; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT3G52120.2p  transcript_id AT3G52120.2  protein_id AT3G52120.2p  transcript_id AT3G52120.2  
At3g52130	chr3:019332081	0.0	C/19332081-19332458	AT3G52130.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT3G07450.1); Has 48 Blast hits to 48 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G52130.1p  transcript_id AT3G52130.1  protein_id AT3G52130.1p  transcript_id AT3G52130.1  
At3g52140	chr3:019333232	0.0	W/19333232-19333538,19333688-19333749,19333953-19334142,19334223-19334363,19334459-19334615,19334696-19334889,19334999-19335100,19335701-19335836,19335941-19336069,19336287-19336602,19336699-19336803,19336968-19337195,19337267-19337407,19337872-19338006,19338097-19338267,19338347-19338433,19338541-19338675,19338841-19338978,19339077-19339145,19339249-19339407,19339613-19339669,19339746-19339786,19339881-19340000,19340086-19340395,19340504-19340611,19340706-19340777,19340894-19341295	AT3G52140.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product tetratricopeptide repeat (TPR)-containing protein  note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT1G15290.1); Has 9395 Blast hits to 2929 proteins in 282 species: Archae - 109; Bacteria - 2193; Metazoa - 5294; Fungi - 854; Plants - 176; Viruses - 9; Other Eukaryotes - 760 (source: NCBI BLink).  protein_id AT3G52140.1p  transcript_id AT3G52140.1  protein_id AT3G52140.1p  transcript_id AT3G52140.1  
At3g52150	chr3:019342074	0.0	W/19342074-19342391,19342480-19342581,19342661-19342963,19343052-19343090	AT3G52150.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: CP33; RNA binding (TAIR:AT3G52380.1); Has 25844 Blast hits to 15833 proteins in 627 species: Archae - 20; Bacteria - 2067; Metazoa - 14187; Fungi - 2805; Plants - 3913; Viruses - 0; Other Eukaryotes - 2852 (source: NCBI BLink).  protein_id AT3G52150.1p  transcript_id AT3G52150.1  protein_id AT3G52150.1p  transcript_id AT3G52150.1  
At3g52150	chr3:019342074	0.0	W/19342074-19342391,19342480-19342581,19342661-19342963,19343052-19343090	AT3G52150.2  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: thylakoid, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: CP33; RNA binding (TAIR:AT3G52380.1); Has 25844 Blast hits to 15833 proteins in 627 species: Archae - 20; Bacteria - 2067; Metazoa - 14187; Fungi - 2805; Plants - 3913; Viruses - 0; Other Eukaryotes - 2852 (source: NCBI BLink).  protein_id AT3G52150.2p  transcript_id AT3G52150.2  protein_id AT3G52150.2p  transcript_id AT3G52150.2  
At3g52155	chr3:019343740	0.0	W/19343740-19343923,19344011-19344110,19344187-19344366,19344444-19344561,19344648-19344722	AT3G52155.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  product unknown protein  note LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078); Has 1050 Blast hits to 1050 proteins in 239 species: Archae - 0; Bacteria - 476; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 552 (source: NCBI BLink).  protein_id AT3G52155.1p  transcript_id AT3G52155.1  protein_id AT3G52155.1p  transcript_id AT3G52155.1  
At3g52160	chr3:019346283	0.0	C/19346283-19346591,19345616-19346200,19345069-19345530	AT3G52160.1  CDS  gene_syn 3-KETOACYL-COA SYNTHASE 15, KCS15  gene KCS15  function Encodes KCS15, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).  go_component membrane|GO:0016020||IEA  go_process fatty acid biosynthetic process|GO:0006633||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_function acyltransferase activity|GO:0008415||ISS  product KCS15 (3-KETOACYL-COA SYNTHASE 15); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups  note 3-KETOACYL-COA SYNTHASE 15 (KCS15); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: fatty acid biosynthetic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: KCS10 (3-KETOACYL-COA SYNTHASE 10); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups (TAIR:AT2G26250.1); Has 2864 Blast hits to 2859 proteins in 653 species: Archae - 0; Bacteria - 617; Metazoa - 0; Fungi - 0; Plants - 2149; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT3G52160.1p  transcript_id AT3G52160.1  protein_id AT3G52160.1p  transcript_id AT3G52160.1  
At3g52170	chr3:019348966	0.0	C/19348966-19349099,19347792-19348881,19347244-19347413,19347039-19347144	AT3G52170.1  CDS  gene_syn T25B15.1  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677|16167891|ISS  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G58210.4); Has 171 Blast hits to 150 proteins in 58 species: Archae - 6; Bacteria - 49; Metazoa - 41; Fungi - 4; Plants - 38; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT3G52170.1p  transcript_id AT3G52170.1  protein_id AT3G52170.1p  transcript_id AT3G52170.1  
At3g52180	chr3:019353434	0.0	C/19353434-19353459,19353198-19353327,19353010-19353112,19352666-19352742,19352495-19352571,19352298-19352378,19351518-19351650,19351267-19351326,19350842-19350898,19350574-19350708	AT3G52180.2  CDS  gene_syn ATPTPKIS1, DSP4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, SEX4, STARCH-EXCESS 4, T25B15.2  gene SEX4  function Encodes a plant-specific protein phosphatase that contains a protein tyrosine phosphatase (PTP) catalytic domain and a kinase interaction sequence (KIS) domain. This protein interacts with the plant SnRK AKIN11. Binds starch. Localized in the chloroplast.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|16623901|IDA  go_component chloroplast|GO:0009507|16772378|IDA  go_process starch metabolic process|GO:0005982|16513634|IMP  go_process starch metabolic process|GO:0005982|16623901|TAS  go_process protein amino acid dephosphorylation|GO:0006470||ISS  go_function protein tyrosine/serine/threonine phosphatase activity|GO:0008138||ISS  go_function polysaccharide binding|GO:0030247|16623901|IDA  product SEX4 (STARCH-EXCESS 4); polysaccharide binding / protein tyrosine/serine/threonine phosphatase  note STARCH-EXCESS 4 (SEX4); FUNCTIONS IN: protein tyrosine/serine/threonine phosphatase activity, polysaccharide binding; INVOLVED IN: protein amino acid dephosphorylation, starch metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase (InterPro:IPR000387), Protein-tyrosine phosphatase, dual specificity (InterPro:IPR000340); BEST Arabidopsis thaliana protein match is: protein phosphatase-related (TAIR:AT3G10940.1); Has 353 Blast hits to 353 proteins in 64 species: Archae - 6; Bacteria - 0; Metazoa - 210; Fungi - 4; Plants - 83; Viruses - 2; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT3G52180.2p  transcript_id AT3G52180.2  protein_id AT3G52180.2p  transcript_id AT3G52180.2  
At3g52180	chr3:019353434	0.0	C/19353434-19353459,19353198-19353327,19353010-19353112,19352666-19352742,19352495-19352571,19352298-19352378,19351518-19351650,19351267-19351326,19350842-19350898,19350613-19350708,19350287-19350346,19350105-19350212,19349884-19350015	AT3G52180.1  CDS  gene_syn ATPTPKIS1, DSP4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, SEX4, STARCH-EXCESS 4, T25B15.2  gene SEX4  function Encodes a plant-specific protein phosphatase that contains a protein tyrosine phosphatase (PTP) catalytic domain and a kinase interaction sequence (KIS) domain. This protein interacts with the plant SnRK AKIN11. Binds starch. Localized in the chloroplast.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast|GO:0009507|16623901|IDA  go_component chloroplast|GO:0009507|16772378|IDA  go_process starch metabolic process|GO:0005982|16513634|IMP  go_process starch metabolic process|GO:0005982|16623901|TAS  go_process protein amino acid dephosphorylation|GO:0006470||ISS  go_function protein tyrosine/serine/threonine phosphatase activity|GO:0008138||ISS  go_function polysaccharide binding|GO:0030247|16623901|IDA  product SEX4 (STARCH-EXCESS 4); polysaccharide binding / protein tyrosine/serine/threonine phosphatase  note STARCH-EXCESS 4 (SEX4); FUNCTIONS IN: protein tyrosine/serine/threonine phosphatase activity, polysaccharide binding; INVOLVED IN: protein amino acid dephosphorylation, starch metabolic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase (InterPro:IPR000387), Protein-tyrosine phosphatase, dual specificity (InterPro:IPR000340); BEST Arabidopsis thaliana protein match is: protein phosphatase-related (TAIR:AT3G10940.1); Has 552 Blast hits to 552 proteins in 75 species: Archae - 6; Bacteria - 4; Metazoa - 373; Fungi - 4; Plants - 98; Viruses - 2; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT3G52180.1p  transcript_id AT3G52180.1  protein_id AT3G52180.1p  transcript_id AT3G52180.1  
At3g52190	chr3:019356719	0.0	C/19356719-19356910,19356362-19356462,19355744-19355876,19355572-19355663,19355276-19355375,19354987-19355059,19354781-19354901,19354573-19354692,19354406-19354476,19354117-19354310	AT3G52190.1  CDS  gene_syn PHF1, PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR1, T25B15.3  gene PHF1  function Encodes a plant specific protein structurally related to the SEC12 proteins of the early secretory pathway. Mutation of PHF1 impairs Pi transport. Expression was detected in all tissues, and was induced by Pi starvation. Localized in endoplasmic reticulum (ER), and mutation of PHF1 resulted in ER retention and reduced accumulation of the plasma membrane PHT1;1 transporter.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component endoplasmic reticulum|GO:0005783|16284308|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process phosphate transport|GO:0006817|16284308|IMP  go_process ER to Golgi vesicle-mediated transport|GO:0006888|16284308|IMP  go_process cellular response to phosphate starvation|GO:0016036|17400898|IEP  go_function nucleotide binding|GO:0000166||ISS  product PHF1 (PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR1); nucleotide binding  note PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR1 (PHF1); FUNCTIONS IN: nucleotide binding; INVOLVED IN: cellular response to phosphate starvation, ER to Golgi vesicle-mediated transport, phosphate transport; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein / St12p protein, putative (TAIR:AT5G50650.1); Has 4771 Blast hits to 3174 proteins in 283 species: Archae - 28; Bacteria - 1616; Metazoa - 1257; Fungi - 975; Plants - 213; Viruses - 0; Other Eukaryotes - 682 (source: NCBI BLink).  protein_id AT3G52190.1p  transcript_id AT3G52190.1  protein_id AT3G52190.1p  transcript_id AT3G52190.1  
At3g52200	chr3:019360317	0.0	W/19360317-19360411,19360795-19360851,19361009-19361063,19361145-19361178,19361556-19361605,19361700-19361744,19361913-19361986,19362126-19362195,19362610-19362801,19362898-19362942,19363049-19363122,19363430-19363499,19363755-19364144,19364228-19364288,19364362-19364406,19364492-19364575,19364959-19365035,19365106-19365168,19365307-19365377,19365476-19365536,19365692-19365752,19365835-19365915,19366033-19366091	AT3G52200.1  CDS  gene_syn DIHYDROLIPOAMIDE S-ACETYLTRANSFERASE, LTA3  gene LTA3  function dihydrolipoamide S-acetyltransferase (LTA3) mRNA, nuclear  go_component mitochondrion|GO:0005739|17137349|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_process acetyl-CoA biosynthetic process from pyruvate|GO:0006086||IEA  go_process pyruvate metabolic process|GO:0006090||IEA  go_process metabolic process|GO:0008152||IEA  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|14764908|IDA  go_function dihydrolipoyllysine-residue acetyltransferase activity|GO:0004742||ISS  product LTA3; ATP binding / dihydrolipoyllysine-residue acetyltransferase  note LTA3; FUNCTIONS IN: dihydrolipoyllysine-residue acetyltransferase activity, ATP binding; INVOLVED IN: pyruvate metabolic process, metabolic process, acetyl-CoA biosynthetic process from pyruvate; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), Dihydrolipoamide acetyltransferase, long form (InterPro:IPR006257), E3 binding (InterPro:IPR004167), 2-oxoacid dehydrogenase acyltransferase, catalytic domain (InterPro:IPR001078), Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: dihydrolipoamide S-acetyltransferase, putative (TAIR:AT3G13930.1); Has 21522 Blast hits to 14109 proteins in 1329 species: Archae - 67; Bacteria - 9444; Metazoa - 933; Fungi - 534; Plants - 345; Viruses - 0; Other Eukaryotes - 10199 (source: NCBI BLink).  protein_id AT3G52200.1p  transcript_id AT3G52200.1  protein_id AT3G52200.1p  transcript_id AT3G52200.1  
At3g52210	chr3:019367035	0.0	W/19367035-19367136,19367221-19367299,19367393-19367487,19367578-19367649,19367729-19367838,19367937-19368056,19368140-19368232,19368490-19368558,19368677-19368765,19368844-19368941,19369153-19369293	AT3G52210.3  CDS  go_process mRNA capping|GO:0006370||IEA  go_component cellular_component|GO:0005575||ND  go_process mRNA capping|GO:0006370||ISS  go_function molecular_function|GO:0003674||ND  product mRNA capping enzyme family protein  note mRNA capping enzyme family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mRNA capping; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: mRNA capping enzyme, large subunit (InterPro:IPR004971); BEST Arabidopsis thaliana protein match is: mRNA capping enzyme family protein (TAIR:AT3G20650.1); Has 334 Blast hits to 332 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 127; Fungi - 111; Plants - 46; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT3G52210.3p  transcript_id AT3G52210.3  protein_id AT3G52210.3p  transcript_id AT3G52210.3  
At3g52210	chr3:019367035	0.0	W/19367035-19367136,19367221-19367299,19367396-19367487,19367578-19367649,19367729-19367838,19367937-19368056,19368140-19368232,19368490-19368558,19368677-19368765,19368844-19368941,19369153-19369293	AT3G52210.1  CDS  go_process mRNA capping|GO:0006370||IEA  go_component cellular_component|GO:0005575||ND  go_process mRNA capping|GO:0006370||ISS  go_function molecular_function|GO:0003674||ND  product mRNA capping enzyme family protein  note mRNA capping enzyme family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mRNA capping; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: mRNA capping enzyme, large subunit (InterPro:IPR004971); BEST Arabidopsis thaliana protein match is: mRNA capping enzyme family protein (TAIR:AT3G20650.1); Has 337 Blast hits to 335 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 127; Fungi - 111; Plants - 46; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT3G52210.1p  transcript_id AT3G52210.1  protein_id AT3G52210.1p  transcript_id AT3G52210.1  
At3g52210	chr3:019367035	0.0	W/19367035-19367136,19367221-19367299,19367396-19367487,19367578-19367649,19367729-19367838,19367937-19368056,19368140-19368232,19368490-19368558,19368684-19368699	AT3G52210.2  CDS  go_process mRNA capping|GO:0006370||IEA  go_component cellular_component|GO:0005575||ND  go_process mRNA capping|GO:0006370||ISS  go_function molecular_function|GO:0003674||ND  product mRNA capping enzyme family protein  note mRNA capping enzyme family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mRNA capping; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: mRNA capping enzyme, large subunit (InterPro:IPR004971); BEST Arabidopsis thaliana protein match is: mRNA capping enzyme family protein (TAIR:AT3G20650.1); Has 323 Blast hits to 322 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 127; Fungi - 111; Plants - 45; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT3G52210.2p  transcript_id AT3G52210.2  protein_id AT3G52210.2p  transcript_id AT3G52210.2  
At3g52220	chr3:019370938	0.0	C/19370938-19370980,19370531-19370620,19370019-19370286,19369580-19369892	AT3G52220.1  CDS  gene_syn T25B15.5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 9607 Blast hits to 4937 proteins in 278 species: Archae - 10; Bacteria - 152; Metazoa - 4787; Fungi - 1223; Plants - 656; Viruses - 23; Other Eukaryotes - 2756 (source: NCBI BLink).  protein_id AT3G52220.1p  transcript_id AT3G52220.1  protein_id AT3G52220.1p  transcript_id AT3G52220.1  
At3g52230	chr3:019371325	0.0	W/19371325-19371609,19372245-19372397	AT3G52230.1  CDS  gene_syn T25B15.4  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast outer membrane|GO:0009707|12177442|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast outer membrane, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 22 Blast hits to 22 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G52230.1p  transcript_id AT3G52230.1  protein_id AT3G52230.1p  transcript_id AT3G52230.1  
At3g52240	chr3:019375768	0.0	C/19375768-19375799,19375559-19375682,19375317-19375482,19375050-19375221,19374510-19374819,19372902-19374140	AT3G52240.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 178 Blast hits to 153 proteins in 51 species: Archae - 0; Bacteria - 13; Metazoa - 52; Fungi - 22; Plants - 39; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT3G52240.1p  transcript_id AT3G52240.1  protein_id AT3G52240.1p  transcript_id AT3G52240.1  
At3g52250	chr3:019376629	0.0	W/19376629-19376806,19377518-19378654,19378882-19379952,19380516-19383100	AT3G52250.1  CDS  function Encodes a protein with a putative role in mRNA splicing.  go_function DNA binding|GO:0003677||IEA  go_process RNA splicing|GO:0008380|15575968|ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product DNA binding / transcription factor  note DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: RNA splicing; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SANT, eukarya (InterPro:IPR017884); Has 710 Blast hits to 668 proteins in 117 species: Archae - 0; Bacteria - 36; Metazoa - 494; Fungi - 36; Plants - 56; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT3G52250.1p  transcript_id AT3G52250.1  protein_id AT3G52250.1p  transcript_id AT3G52250.1  
At3g52260	chr3:019386350	0.0	C/19386350-19386440,19386212-19386272,19386098-19386125,19385974-19386020,19385796-19385886,19385486-19385654,19385224-19385308,19385033-19385117,19384834-19384909,19384650-19384717,19384456-19384525,19383916-19384000,19383614-19383710,19383452-19383508	AT3G52260.2  CDS  go_process pseudouridine synthesis|GO:0001522||IEA  go_function RNA binding|GO:0003723||IEA  go_function pseudouridine synthase activity|GO:0009982||IEA  go_component cellular_component|GO:0005575||ND  go_function pseudouridine synthase activity|GO:0009982||ISS  product pseudouridine synthase family protein  note pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity, RNA binding; INVOLVED IN: pseudouridine synthesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, RluD (InterPro:IPR006225), Pseudouridine synthase (InterPro:IPR006145), Pseudouridine synthase, conserved site (InterPro:IPR006224); BEST Arabidopsis thaliana protein match is: pseudouridine synthase family protein (TAIR:AT5G51140.1); Has 11676 Blast hits to 11666 proteins in 1471 species: Archae - 12; Bacteria - 7372; Metazoa - 209; Fungi - 130; Plants - 123; Viruses - 0; Other Eukaryotes - 3830 (source: NCBI BLink).  protein_id AT3G52260.2p  transcript_id AT3G52260.2  protein_id AT3G52260.2p  transcript_id AT3G52260.2  
At3g52260	chr3:019386350	0.0	C/19386350-19386440,19386212-19386272,19386098-19386125,19385974-19386020,19385796-19385886,19385486-19385654,19385224-19385308,19385033-19385117,19384834-19384909,19384650-19384717,19384460-19384525,19383983-19384000	AT3G52260.1  CDS  go_process pseudouridine synthesis|GO:0001522||IEA  go_function RNA binding|GO:0003723||IEA  go_function pseudouridine synthase activity|GO:0009982||IEA  go_component cellular_component|GO:0005575||ND  go_function pseudouridine synthase activity|GO:0009982||ISS  product pseudouridine synthase family protein  note pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity, RNA binding; INVOLVED IN: pseudouridine synthesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase (InterPro:IPR006145), Pseudouridine synthase, conserved site (InterPro:IPR006224), RNA-binding S4 (InterPro:IPR002942); Has 10690 Blast hits to 10690 proteins in 1452 species: Archae - 12; Bacteria - 7071; Metazoa - 175; Fungi - 128; Plants - 101; Viruses - 0; Other Eukaryotes - 3203 (source: NCBI BLink).  protein_id AT3G52260.1p  transcript_id AT3G52260.1  protein_id AT3G52260.1p  transcript_id AT3G52260.1  
At3g52270	chr3:019388657	0.0	C/19388657-19388902,19388155-19388263,19387988-19388041,19387800-19387930,19387642-19387710,19387412-19387558,19387180-19387287	AT3G52270.1  CDS  go_component transcription factor TFIIF complex|GO:0005674||IEA  go_process transcription initiation from RNA polymerase II promoter|GO:0006367||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  go_function ATP binding|GO:0005524||IEA  product ATP binding / RNA polymerase II transcription factor  note ATP binding / RNA polymerase II transcription factor; FUNCTIONS IN: RNA polymerase II transcription factor activity, ATP binding; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: transcription factor TFIIF complex; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, F mature embryo stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Transcription initiation factor IIF, beta subunit (InterPro:IPR003196); BEST Arabidopsis thaliana protein match is: transcription initiation factor IIF beta subunit (TFIIF-beta) family protein (TAIR:AT1G75510.1); Has 235 Blast hits to 234 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 80; Plants - 35; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT3G52270.1p  transcript_id AT3G52270.1  protein_id AT3G52270.1p  transcript_id AT3G52270.1  
At3g52280	chr3:019391179	0.0	C/19391179-19391289,19390752-19390952,19390592-19390669,19389932-19390156,19389754-19389852,19389617-19389675,19389385-19389535,19389103-19389288	AT3G52280.1  CDS  gene_syn GENERAL TRANSCRIPTION FACTOR GROUP E6, GTE6  gene GTE6  function Bromodomain containing nuclear-localized protein involved in leaf development. GTE6 binds to the promoter and intron of AS1 and regulates its expression via histone acetylation.  go_component nucleus|GO:0005634|16166385|IDA  go_process chromatin remodeling|GO:0006338|16166385|IDA  go_function DNA binding|GO:0003677||ISS  go_function H3/H4 histone acetyltransferase activity|GO:0004406|16166385|IDA  product GTE6 (GENERAL TRANSCRIPTION FACTOR GROUP E6); DNA binding / H3/H4 histone acetyltransferase  note GENERAL TRANSCRIPTION FACTOR GROUP E6 (GTE6); FUNCTIONS IN: DNA binding, H3/H4 histone acetyltransferase activity; INVOLVED IN: chromatin remodeling; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor GTE6 (InterPro:IPR017413), Bromodomain, conserved site (InterPro:IPR018359), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: IMB1 (IMBIBITION-INDUCIBLE 1); DNA binding (TAIR:AT2G34900.1); Has 4590 Blast hits to 3633 proteins in 200 species: Archae - 5; Bacteria - 22; Metazoa - 3124; Fungi - 517; Plants - 257; Viruses - 0; Other Eukaryotes - 665 (source: NCBI BLink).  protein_id AT3G52280.1p  transcript_id AT3G52280.1  protein_id AT3G52280.1p  transcript_id AT3G52280.1  
At3g52285	chr3:019392674	0.0	C/19392674-19392745	AT3G52285.1  tRNA  gene_syn 60681.TRNA-PRO-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: AGG)  transcript_id AT3G52285.1  
At3g52290	chr3:019394441	0.0	W/19394441-19394509,19394633-19394929,19395031-19395246,19395397-19395516,19395606-19396196	AT3G52290.1  CDS  gene_syn IQ-domain 3, IQD3  gene IQD3  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product IQD3 (IQ-domain 3); calmodulin binding  note IQ-domain 3 (IQD3); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: iqd2 (IQ-domain 2); calmodulin binding (TAIR:AT5G03040.2); Has 440 Blast hits to 432 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 5; Plants - 418; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT3G52290.1p  transcript_id AT3G52290.1  protein_id AT3G52290.1p  transcript_id AT3G52290.1  
At3g52300	chr3:019396689	0.0	W/19396689-19396859,19397282-19397363,19397652-19397716,19397820-19397906,19398018-19398119	AT3G52300.1  CDS  gene_syn ATP SYNTHASE D CHAIN, MITOCHONDRIAL, ATPQ  gene ATPQ  go_component nucleolus|GO:0005730|15496452|IDA  go_component mitochondrion|GO:0005739|15276431|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function hydrogen ion transmembrane transporter activity|GO:0015078||IEA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|12681508|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  product ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL); hydrogen ion transmembrane transporter  note ATP SYNTHASE D CHAIN, MITOCHONDRIAL (ATPQ); FUNCTIONS IN: hydrogen ion transmembrane transporter activity; INVOLVED IN: response to salt stress; LOCATED IN: in 8 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F0 complex, subunit D, mitochondrial (InterPro:IPR008689); Has 220 Blast hits to 220 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 31; Plants - 39; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G52300.1p  transcript_id AT3G52300.1  protein_id AT3G52300.1p  transcript_id AT3G52300.1  
At3g52300	chr3:019396689	0.0	W/19396689-19396859,19397282-19397363,19397652-19397720,19397820-19397866	AT3G52300.2  CDS  gene_syn ATP SYNTHASE D CHAIN, MITOCHONDRIAL, ATPQ  gene ATPQ  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|12681508|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  product ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL)  note ATP SYNTHASE D CHAIN, MITOCHONDRIAL (ATPQ); INVOLVED IN: response to salt stress; LOCATED IN: in 6 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; Has 131 Blast hits to 131 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 93; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G52300.2p  transcript_id AT3G52300.2  protein_id AT3G52300.2p  transcript_id AT3G52300.2  
At3g52302	chr3:019398656	0.0	C/19398656-19398754	AT3G52302.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G52302.1p  transcript_id AT3G52302.1  protein_id AT3G52302.1p  transcript_id AT3G52302.1  
At3g52310	chr3:019399378	0.0	W/19399378-19399741,19399835-19399908,19400478-19400713,19400801-19400956,19401069-19401252,19401336-19401586,19401675-19402012,19402096-19402376,19402455-19402562,19402640-19402861	AT3G52310.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process transport|GO:0006810||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ABC transporter family protein  note ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: plasma membrane; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 (InterPro:IPR000412), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT5G06530.2); Has 233755 Blast hits to 212999 proteins in 2656 species: Archae - 4206; Bacteria - 159693; Metazoa - 8196; Fungi - 4697; Plants - 2782; Viruses - 7; Other Eukaryotes - 54174 (source: NCBI BLink).  protein_id AT3G52310.1p  transcript_id AT3G52310.1  protein_id AT3G52310.1p  transcript_id AT3G52310.1  
At3g52320	chr3:019403020	0.0	C/19403020-19404192	AT3G52320.1  CDS  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G62660.1); Has 1061 Blast hits to 1047 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1059; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G52320.1p  transcript_id AT3G52320.1  protein_id AT3G52320.1p  transcript_id AT3G52320.1  
At3g52330	chr3:019406019	0.0	C/19406019-19406207,19405394-19405878,19405144-19405270,19404955-19405077	AT3G52330.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G52320.1); Has 295 Blast hits to 289 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 295; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G52330.1p  transcript_id AT3G52330.1  protein_id AT3G52330.1p  transcript_id AT3G52330.1  
At3g52340	chr3:019407412	0.0	W/19407412-19407471,19407549-19407953,19408045-19408239,19408317-19408607,19408689-19408875,19408977-19409023,19409096-19409182	AT3G52340.1  CDS  gene_syn ATSPP2, SPP2, SUCROSE-6F-PHOSPHATE PHOSPHOHYDROLASE 2, SUCROSE-PHOSPHATASE 2  gene SPP2  function sucrose-phosphatase (SPP2)  go_process sucrose biosynthetic process|GO:0005986||IEA  go_process metabolic process|GO:0008152||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function catalytic activity|GO:0003824||IEA  go_function phosphatase activity|GO:0016791||IEA  go_function sucrose-phosphatase activity|GO:0050307||IEA  go_process sucrose biosynthetic process|GO:0005986||ISS  go_function sucrose-phosphatase activity|GO:0050307||ISS  product SPP2 (SUCROSE-6F-PHOSPHATE PHOSPHOHYDROLASE 2); catalytic/ magnesium ion binding / phosphatase/ sucrose-phosphatase  note SUCROSE-6F-PHOSPHATE PHOSPHOHYDROLASE 2 (SPP2); FUNCTIONS IN: phosphatase activity, magnesium ion binding, catalytic activity, sucrose-phosphatase activity; INVOLVED IN: sucrose biosynthetic process, metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sucrose-6F-phosphate phosphohydrolase, plant and cyanobacteria (InterPro:IPR006380), Sucrose-6-phosphate phosphohydrolase C-terminal (InterPro:IPR013679), HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Sucrose-phosphate phosphatase (InterPro:IPR006378), Sucrose phosphatase, plant and cyanobacteria (InterPro:IPR012847); BEST Arabidopsis thaliana protein match is: sucrose-phosphatase 1 (SPP1) (TAIR:AT2G35840.2); Has 506 Blast hits to 504 proteins in 180 species: Archae - 3; Bacteria - 350; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT3G52340.1p  transcript_id AT3G52340.1  protein_id AT3G52340.1p  transcript_id AT3G52340.1  
At3g52340	chr3:019407412	0.0	W/19407412-19407471,19407549-19407953,19408045-19408239,19408317-19408607,19408689-19408875,19408977-19409023,19409096-19409182	AT3G52340.2  CDS  gene_syn ATSPP2, SPP2, SUCROSE-6F-PHOSPHATE PHOSPHOHYDROLASE 2, SUCROSE-PHOSPHATASE 2  gene SPP2  function sucrose-phosphatase (SPP2)  go_process sucrose biosynthetic process|GO:0005986||IEA  go_process metabolic process|GO:0008152||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function catalytic activity|GO:0003824||IEA  go_function phosphatase activity|GO:0016791||IEA  go_function sucrose-phosphatase activity|GO:0050307||IEA  go_process sucrose biosynthetic process|GO:0005986||ISS  go_function sucrose-phosphatase activity|GO:0050307||ISS  product SPP2 (SUCROSE-6F-PHOSPHATE PHOSPHOHYDROLASE 2); catalytic/ magnesium ion binding / phosphatase/ sucrose-phosphatase  note SUCROSE-6F-PHOSPHATE PHOSPHOHYDROLASE 2 (SPP2); FUNCTIONS IN: phosphatase activity, magnesium ion binding, catalytic activity, sucrose-phosphatase activity; INVOLVED IN: sucrose biosynthetic process, metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sucrose-6F-phosphate phosphohydrolase, plant and cyanobacteria (InterPro:IPR006380), Sucrose-6-phosphate phosphohydrolase C-terminal (InterPro:IPR013679), HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Sucrose-phosphate phosphatase (InterPro:IPR006378), Sucrose phosphatase, plant and cyanobacteria (InterPro:IPR012847); BEST Arabidopsis thaliana protein match is: sucrose-phosphatase 1 (SPP1) (TAIR:AT2G35840.2); Has 506 Blast hits to 504 proteins in 180 species: Archae - 3; Bacteria - 350; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT3G52340.2p  transcript_id AT3G52340.2  protein_id AT3G52340.2p  transcript_id AT3G52340.2  
At3g52340	chr3:019407412	0.0	W/19407412-19407471,19407549-19407953,19408045-19408239,19408317-19408607,19408689-19408875,19408977-19409023,19409096-19409182	AT3G52340.3  CDS  gene_syn ATSPP2, SPP2, SUCROSE-6F-PHOSPHATE PHOSPHOHYDROLASE 2, SUCROSE-PHOSPHATASE 2  gene SPP2  function sucrose-phosphatase (SPP2)  go_process sucrose biosynthetic process|GO:0005986||IEA  go_process metabolic process|GO:0008152||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function catalytic activity|GO:0003824||IEA  go_function phosphatase activity|GO:0016791||IEA  go_function sucrose-phosphatase activity|GO:0050307||IEA  go_process sucrose biosynthetic process|GO:0005986||ISS  go_function sucrose-phosphatase activity|GO:0050307||ISS  product SPP2 (SUCROSE-6F-PHOSPHATE PHOSPHOHYDROLASE 2); catalytic/ magnesium ion binding / phosphatase/ sucrose-phosphatase  note SUCROSE-6F-PHOSPHATE PHOSPHOHYDROLASE 2 (SPP2); FUNCTIONS IN: phosphatase activity, magnesium ion binding, sucrose-phosphatase activity, catalytic activity; INVOLVED IN: sucrose biosynthetic process, metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sucrose-6F-phosphate phosphohydrolase, plant and cyanobacteria (InterPro:IPR006380), Sucrose-6-phosphate phosphohydrolase C-terminal (InterPro:IPR013679), HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Sucrose-phosphate phosphatase (InterPro:IPR006378), Sucrose phosphatase, plant and cyanobacteria (InterPro:IPR012847); BEST Arabidopsis thaliana protein match is: sucrose-phosphatase 1 (SPP1) (TAIR:AT2G35840.2); Has 506 Blast hits to 504 proteins in 180 species: Archae - 3; Bacteria - 350; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT3G52340.3p  transcript_id AT3G52340.3  protein_id AT3G52340.3p  transcript_id AT3G52340.3  
At3g52345	chr3:019409368	0.0	C/19409368-19409439	AT3G52345.1  tRNA  gene_syn 60681.TRNA-CYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Cys (anticodon: GCA)  transcript_id AT3G52345.1  
At3g52350	chr3:019409606	0.0	C/19409606-19410148	AT3G52350.1  CDS  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component intracellular|GO:0005622||ISS  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product D111/G-patch domain-containing protein  note D111/G-patch domain-containing protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: D111/G-patch (InterPro:IPR000467); BEST Arabidopsis thaliana protein match is: D111/G-patch domain-containing protein (TAIR:AT5G08535.1); Has 897 Blast hits to 897 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 648; Fungi - 104; Plants - 104; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT3G52350.1p  transcript_id AT3G52350.1  protein_id AT3G52350.1p  transcript_id AT3G52350.1  
At3g52360	chr3:019412343	0.0	W/19412343-19412463,19412556-19412695	AT3G52360.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35850.1); Has 14 Blast hits to 14 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G52360.1p  transcript_id AT3G52360.1  protein_id AT3G52360.1p  transcript_id AT3G52360.1  
At3g52370	chr3:019417549	0.0	W/19417549-19418800,19419491-19419549	AT3G52370.1  CDS  gene_syn FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 15 PRECURSOR, FLA15  gene FLA15  go_component endomembrane system|GO:0012505||IEA  go_process cell adhesion|GO:0007155||ISS  product FLA15 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 15 PRECURSOR)  note FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 15 PRECURSOR (FLA15); INVOLVED IN: cell adhesion; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FLA16 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 PRECURSOR) (TAIR:AT2G35860.1); Has 934 Blast hits to 889 proteins in 194 species: Archae - 6; Bacteria - 394; Metazoa - 153; Fungi - 10; Plants - 151; Viruses - 3; Other Eukaryotes - 217 (source: NCBI BLink).  protein_id AT3G52370.1p  transcript_id AT3G52370.1  protein_id AT3G52370.1p  transcript_id AT3G52370.1  
At3g52380	chr3:019421619	0.0	W/19421619-19422056,19422159-19422260,19422335-19422643,19422715-19422855	AT3G52380.1  CDS  gene_syn CP33, PDE322, PIGMENT DEFECTIVE 322  gene CP33  function chloroplast RNA-binding protein  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast|GO:0009507|7894017|IDA  go_component chloroplast|GO:0009507|7894017|ISS  go_function RNA binding|GO:0003723|7894017|ISS  go_function RNA binding|GO:0003723||ISS  product CP33; RNA binding  note CP33; FUNCTIONS IN: RNA binding; LOCATED IN: thylakoid, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative (TAIR:AT2G37220.1); Has 28952 Blast hits to 17590 proteins in 646 species: Archae - 20; Bacteria - 2156; Metazoa - 15736; Fungi - 3446; Plants - 4252; Viruses - 7; Other Eukaryotes - 3335 (source: NCBI BLink).  protein_id AT3G52380.1p  transcript_id AT3G52380.1  protein_id AT3G52380.1p  transcript_id AT3G52380.1  
At3g52390	chr3:019425158	0.0	C/19425158-19425183,19425011-19425036,19424813-19424913,19424668-19424725,19424545-19424588,19424361-19424441,19424179-19424249,19423985-19424095,19423809-19423891,19423450-19423666,19423277-19423360,19423105-19423174	AT3G52390.2  CDS  go_function endodeoxyribonuclease activity, producing 5 -phosphomonoesters|GO:0016888||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function deoxyribonuclease activity|GO:0004536||ISS  product tatD-related deoxyribonuclease family protein  note tatD-related deoxyribonuclease family protein; FUNCTIONS IN: endodeoxyribonuclease activity, producing 5 -phosphomonoesters, deoxyribonuclease activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Deoxyribonuclease, TatD Mg-dependent (InterPro:IPR012278), Deoxyribonuclease, TatD (InterPro:IPR015992), Deoxyribonuclease, TatD-related, conserved site (InterPro:IPR018228), Deoxyribonuclease, TatD-related (InterPro:IPR001130); BEST Arabidopsis thaliana protein match is: tatD-related deoxyribonuclease family protein (TAIR:AT3G03500.1); Has 6157 Blast hits to 6145 proteins in 1444 species: Archae - 70; Bacteria - 3648; Metazoa - 246; Fungi - 124; Plants - 47; Viruses - 0; Other Eukaryotes - 2022 (source: NCBI BLink).  protein_id AT3G52390.2p  transcript_id AT3G52390.2  protein_id AT3G52390.2p  transcript_id AT3G52390.2  
At3g52390	chr3:019425162	0.0	C/19425162-19425183,19425011-19425031,19424813-19424913,19424668-19424725,19424545-19424588,19424361-19424441,19424179-19424249,19423985-19424095,19423809-19423891,19423450-19423666,19423277-19423360,19423105-19423174	AT3G52390.1  CDS  go_function endodeoxyribonuclease activity, producing 5 -phosphomonoesters|GO:0016888||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function deoxyribonuclease activity|GO:0004536||ISS  product tatD-related deoxyribonuclease family protein  note tatD-related deoxyribonuclease family protein; FUNCTIONS IN: endodeoxyribonuclease activity, producing 5 -phosphomonoesters, deoxyribonuclease activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Deoxyribonuclease, TatD Mg-dependent (InterPro:IPR012278), Deoxyribonuclease, TatD (InterPro:IPR015992), Deoxyribonuclease, TatD-related, conserved site (InterPro:IPR018228), Deoxyribonuclease, TatD-related (InterPro:IPR001130); BEST Arabidopsis thaliana protein match is: tatD-related deoxyribonuclease family protein (TAIR:AT3G03500.1); Has 6164 Blast hits to 6150 proteins in 1444 species: Archae - 70; Bacteria - 3648; Metazoa - 247; Fungi - 126; Plants - 47; Viruses - 0; Other Eukaryotes - 2026 (source: NCBI BLink).  protein_id AT3G52390.1p  transcript_id AT3G52390.1  protein_id AT3G52390.1p  transcript_id AT3G52390.1  
At3g52400	chr3:019426462	0.0	C/19426462-19427032,19425835-19426289	AT3G52400.1  CDS  gene_syn ATSYP122, SYNTAXIN OF PLANTS 122, SYP122  gene SYP122  function syntaxin protein, involved in the negative regulation of defense pathways such as programmed cell death, salicylic acid signalling pathway, jasmonic acid signalling pathway  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component plasma membrane|GO:0005886|15342780|IDA  go_process protein targeting to membrane|GO:0006612|17662029|IDA  go_process intracellular protein transport|GO:0006886|11115874|TAS  go_process intracellular protein transport|GO:0006886||ISS  go_process membrane fusion|GO:0006944|11115874|TAS  go_process salicylic acid mediated signaling pathway|GO:0009863|17241452|IGI  go_process jasmonic acid mediated signaling pathway|GO:0009867|17241452|IGI  go_process regulation of plant-type hypersensitive response|GO:0010363|17241452|IGI  go_process negative regulation of programmed cell death|GO:0043069|17241452|IGI  go_process defense response to fungus|GO:0050832|15342780|IGI  go_process negative regulation of cellular defense response|GO:0051245|17241452|IGI  go_function SNAP receptor activity|GO:0005484|11115874|TAS  product SYP122 (SYNTAXIN OF PLANTS 122); SNAP receptor  note SYNTAXIN OF PLANTS 122 (SYP122); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: in 9 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: SYP121 (SYNTAXIN OF PLANTS 121); SNAP receptor/ protein anchor (TAIR:AT3G11820.1); Has 1853 Blast hits to 1853 proteins in 207 species: Archae - 2; Bacteria - 28; Metazoa - 906; Fungi - 350; Plants - 261; Viruses - 0; Other Eukaryotes - 306 (source: NCBI BLink).  protein_id AT3G52400.1p  transcript_id AT3G52400.1  protein_id AT3G52400.1p  transcript_id AT3G52400.1  
At3g52410	chr3:019428300	0.0	W/19428300-19428920	AT3G52410.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G36010.1); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Protein of unknown function DUF321; (InterPro:IPR005529)  
At3g52420	chr3:019429775	0.0	W/19429775-19429969	AT3G52420.1  CDS  gene_syn ATOEP7, OEP7, OUTER ENVELOPE MEMBRANE PROTEIN 7  gene OEP7  function encodes a 7 kDa chloroplast outer envelope membrane protein.  go_component integral to chloroplast outer membrane|GO:0031359|11595795|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product OEP7 (OUTER ENVELOPE MEMBRANE PROTEIN 7)  note OUTER ENVELOPE MEMBRANE PROTEIN 7 (OEP7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to chloroplast outer membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; Has 49 Blast hits to 49 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G52420.1p  transcript_id AT3G52420.1  protein_id AT3G52420.1p  transcript_id AT3G52420.1  
At3g52430	chr3:019431566	0.0	W/19431566-19431856,19432958-19434292	AT3G52430.1  CDS  gene_syn PAD4, PHYTOALEXIN DEFICIENT 4  gene PAD4  function Encodes a lipase-like gene that is important for salicylic acid signaling and function in resistance (R) gene-mediated and basal plant disease resistance. PAD4 can interact directly with EDS1, another disease resistance signaling protein. Expressed at elevated level in response to green peach aphid (GPA) feeding, and modulates the GPA feeding-induced leaf senescence through a mechanism that doesn t require camalexin synthesis and salicylic acid (SA) signaling.  go_component cellular_component|GO:0005575||ND  go_process response to hypoxia|GO:0001666|18055613|IMP  go_process defense response to insect|GO:0002213|17725549|IMP  go_process lipid metabolic process|GO:0006629||ISS  go_process response to insect|GO:0009625|16299172|IMP  go_process systemic acquired resistance|GO:0009627|17419843|IEP  go_process defense response to bacterium, incompatible interaction|GO:0009816|9136026|IMP  go_process systemic acquired resistance, salicylic acid mediated signaling pathway|GO:0009862|10557364|TAS  go_process systemic acquired resistance, salicylic acid mediated signaling pathway|GO:0009862|11574472|IMP  go_process leaf senescence|GO:0010150|16299172|IMP  go_process regulation of hydrogen peroxide metabolic process|GO:0010310|18055613|IMP  go_process aerenchyma formation|GO:0010618|18055613|IMP  go_process negative regulation of defense response|GO:0031348|16732289|IMP  go_process response to other organism|GO:0051707|16531493|IEP  go_function triacylglycerol lipase activity|GO:0004806||ISS  go_function protein binding|GO:0005515|11574472|IPI  go_function lipase activity|GO:0016298|10557364|ISS  product PAD4 (PHYTOALEXIN DEFICIENT 4); lipase/ protein binding / triacylglycerol lipase  note PHYTOALEXIN DEFICIENT 4 (PAD4); FUNCTIONS IN: protein binding, lipase activity, triacylglycerol lipase activity; INVOLVED IN: in 12 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: SAG101 (SENESCENCE-ASSOCIATED GENE 101); carboxylesterase/ triacylglycerol lipase (TAIR:AT5G14930.2); Has 556 Blast hits to 483 proteins in 57 species: Archae - 0; Bacteria - 18; Metazoa - 19; Fungi - 5; Plants - 468; Viruses - 1; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT3G52430.1p  transcript_id AT3G52430.1  protein_id AT3G52430.1p  transcript_id AT3G52430.1  
At3g52440	chr3:019435447	0.0	W/19435447-19436190	AT3G52440.1  CDS  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product Dof-type zinc finger domain-containing protein  note Dof-type zinc finger domain-containing protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT1G21340.1); Has 624 Blast hits to 616 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 617; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G52440.1p  transcript_id AT3G52440.1  protein_id AT3G52440.1p  transcript_id AT3G52440.1  
At3g52450	chr3:019440943	0.0	C/19440943-19442250	AT3G52450.1  CDS  gene_syn PLANT U-BOX 22, PUB22  gene PUB22  function Encodes a cytoplasmically localized U-box domain E3 ubiquitin ligase protein that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity.  go_component cytosol|GO:0005829|18664614|IDA  go_process respiratory burst during defense response|GO:0002679|18771922|IGI  go_process defense response|GO:0006952|18771922|IGI  go_process response to water deprivation|GO:0009414|18664614|IMP  go_process response to chitin|GO:0010200|17722694|IEP  go_process protein ubiquitination|GO:0016567|18664614|IDA  go_process protein autoubiquitination|GO:0051865|18771922|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|18664614|IGI  product PUB22 (PLANT U-BOX 22); ubiquitin-protein ligase  note PLANT U-BOX 22 (PUB22); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: in 6 processes; LOCATED IN: cytosol; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: PUB23 (PLANT U-BOX 23); ubiquitin-protein ligase (TAIR:AT2G35930.1); Has 1493 Blast hits to 1488 proteins in 141 species: Archae - 0; Bacteria - 24; Metazoa - 220; Fungi - 62; Plants - 1000; Viruses - 3; Other Eukaryotes - 184 (source: NCBI BLink).  protein_id AT3G52450.1p  transcript_id AT3G52450.1  protein_id AT3G52450.1p  transcript_id AT3G52450.1  
At3g52460	chr3:019446970	0.0	W/19446970-19447872	AT3G52460.1  CDS  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G27260.1); Has 12166 Blast hits to 7359 proteins in 574 species: Archae - 22; Bacteria - 978; Metazoa - 3608; Fungi - 1600; Plants - 3785; Viruses - 412; Other Eukaryotes - 1761 (source: NCBI BLink).  protein_id AT3G52460.1p  transcript_id AT3G52460.1  protein_id AT3G52460.1p  transcript_id AT3G52460.1  
At3g52470	chr3:019450750	0.0	W/19450750-19451376	AT3G52470.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product harpin-induced family protein / HIN1 family protein / harpin-responsive family protein  note harpin-induced family protein / HIN1 family protein / harpin-responsive family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: NHL12 (TAIR:AT2G35960.1); Has 615 Blast hits to 615 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 615; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G52470.1p  transcript_id AT3G52470.1  protein_id AT3G52470.1p  transcript_id AT3G52470.1  
At3g52480	chr3:019452478	0.0	C/19452478-19453107	AT3G52480.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; Has 11 Blast hits to 11 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G52480.1p  transcript_id AT3G52480.1  protein_id AT3G52480.1p  transcript_id AT3G52480.1  
At3g52490	chr3:019457583	0.0	C/19457583-19458721,19457049-19457247,19455850-19456959	AT3G52490.1  CDS  go_process protein metabolic process|GO:0019538||IEA  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  product heat shock protein-related  note heat shock protein-related; FUNCTIONS IN: protein binding; INVOLVED IN: protein metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: heat shock protein-related (TAIR:AT4G29920.1); Has 4159 Blast hits to 4008 proteins in 1277 species: Archae - 17; Bacteria - 3234; Metazoa - 1; Fungi - 125; Plants - 177; Viruses - 0; Other Eukaryotes - 605 (source: NCBI BLink).  protein_id AT3G52490.1p  transcript_id AT3G52490.1  protein_id AT3G52490.1p  transcript_id AT3G52490.1  
At3g52500	chr3:019465644	0.0	C/19465644-19467053	AT3G52500.1  CDS  go_component cell wall|GO:0005618|14595688|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cell wall, membrane, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT4G16563.1); Has 1465 Blast hits to 1453 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 206; Fungi - 100; Plants - 1115; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT3G52500.1p  transcript_id AT3G52500.1  protein_id AT3G52500.1p  transcript_id AT3G52500.1  
At3g52510	chr3:019470303	0.0	C/19470303-19470378,19469652-19470226	AT3G52510.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G52320.1); Has 185 Blast hits to 183 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 185; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G52510.1p  transcript_id AT3G52510.1  protein_id AT3G52510.1p  transcript_id AT3G52510.1  
At3g52520	chr3:019473483	0.0	W/19473483-19473884	AT3G52520.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06280.3); Has 12 Blast hits to 12 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G52520.1p  transcript_id AT3G52520.1  protein_id AT3G52520.1p  transcript_id AT3G52520.1  
At3g52525	chr3:019475159	0.0	W/19475159-19475638	AT3G52525.1  CDS  gene_syn ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ATOFP6, OFP6, OVATE FAMILY PROTEIN 6  gene OFP6  go_process biological_process|GO:0008150||ND  product OFP6 (OVATE FAMILY PROTEIN 6)  note OVATE FAMILY PROTEIN 6 (OFP6); INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623, plant (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36026.1); Has 221 Blast hits to 221 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 221; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G52525.1p  transcript_id AT3G52525.1  protein_id AT3G52525.1p  transcript_id AT3G52525.1  
At3g52527	chr3:019478103	0.0	C/19478103-19478451	AT3G52527.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 3.6e-22 P-value blast match to GB:AAC02672 polyprotein (Ty1_Copia-element) (Arabidopsis arenosa)  
At3g52530	chr3:019484867	0.0	C/19484867-19485922	AT3G52530.1  CDS  gene_syn F3C22.5  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT3G57700.1); Has 23148 Blast hits to 22918 proteins in 923 species: Archae - 5; Bacteria - 1649; Metazoa - 5931; Fungi - 624; Plants - 12803; Viruses - 52; Other Eukaryotes - 2084 (source: NCBI BLink).  protein_id AT3G52530.1p  transcript_id AT3G52530.1  protein_id AT3G52530.1p  transcript_id AT3G52530.1  
At3g52535	chr3:019487129	0.0	W/19487129-19487469	AT3G52535.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT3G52540  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G52535.2  
At3g52535	chr3:019487129	0.0	W/19487129-19488556	AT3G52535.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT3G52540  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G52535.1  
At3g52540	chr3:019488716	0.0	C/19488716-19489564	AT3G52540.1  CDS  gene_syn ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 18, ATOFP18, F3C22.1, OFP18, OVATE FAMILY PROTEIN 18  gene OFP18  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product OFP18 (OVATE FAMILY PROTEIN 18)  note OVATE FAMILY PROTEIN 18 (OFP18); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623, plant (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: OFP15 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 15) (TAIR:AT2G36050.1); Has 363 Blast hits to 224 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 43; Plants - 111; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT3G52540.1p  transcript_id AT3G52540.1  protein_id AT3G52540.1p  transcript_id AT3G52540.1  
At3g52550	chr3:019492376	0.0	C/19492376-19492912	AT3G52550.1  CDS  gene_syn F3C22.7  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: OFP18 (OVATE FAMILY PROTEIN 18) (TAIR:AT3G52540.1); Has 8441 Blast hits to 1494 proteins in 132 species: Archae - 0; Bacteria - 23; Metazoa - 6800; Fungi - 346; Plants - 265; Viruses - 154; Other Eukaryotes - 853 (source: NCBI BLink).  protein_id AT3G52550.1p  transcript_id AT3G52550.1  protein_id AT3G52550.1p  transcript_id AT3G52550.1  
At3g52560	chr3:019495266	0.0	C/19495266-19495331,19494903-19495028,19494678-19494818	AT3G52560.3  CDS  gene_syn F3C22.2, METHYL METHANESULFONATE2 ZWEI HOMOLOGE 4, MMZ4, UBIQUITIN E2 VARIANT 1D, UBIQUITIN E2 VARIANT 1D-4, UEV1D, UEV1D-4  gene UEV1D-4  function MMZ4/UEV1D encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1D-4, a predicted splice variant, can interact relatively weakly with UBC35/UBC13A and UBC36/UBC13B in a yeast-2-hybrid UEV1D-4 can also significantly, but not totally, functionally complement an mms2 mutation in budding yeast by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS. uev1d-1 mutants are more sensitive than wild type plants to the DNA damaging agent MMS in seed germination and pollen germination assays.  go_component UBC13-MMS2 complex|GO:0031372|18178771|IPI  go_process postreplication repair|GO:0006301|18178771|IGI  go_process response to DNA damage stimulus|GO:0006974|18178771|IMP  go_function ubiquitin-protein ligase activity|GO:0004842|18178771|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|18178771|IPI  product UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4); protein binding / ubiquitin-protein ligase  note UBIQUITIN E2 VARIANT 1D-4 (UEV1D-4); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: postreplication repair, response to DNA damage stimulus; LOCATED IN: UBC13-MMS2 complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme family protein (TAIR:AT2G36060.2); Has 874 Blast hits to 874 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 517; Fungi - 101; Plants - 142; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).  protein_id AT3G52560.3p  transcript_id AT3G52560.3  protein_id AT3G52560.3p  transcript_id AT3G52560.3  
At3g52560	chr3:019495921	0.0	C/19495921-19495954,19495266-19495408,19494903-19495028,19494678-19494818	AT3G52560.2  CDS  gene_syn F3C22.2, METHYL METHANESULFONATE2 ZWEI HOMOLOGE 4, MMZ4, UBIQUITIN E2 VARIANT 1D, UBIQUITIN E2 VARIANT 1D-4, UEV1D, UEV1D-4  gene UEV1D-4  function MMZ4/UEV1D encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1D-4, a predicted splice variant, can interact relatively weakly with UBC35/UBC13A and UBC36/UBC13B in a yeast-2-hybrid UEV1D-4 can also significantly, but not totally, functionally complement an mms2 mutation in budding yeast by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS. uev1d-1 mutants are more sensitive than wild type plants to the DNA damaging agent MMS in seed germination and pollen germination assays.  go_component UBC13-MMS2 complex|GO:0031372|18178771|IPI  go_process postreplication repair|GO:0006301|18178771|IGI  go_process response to DNA damage stimulus|GO:0006974|18178771|IMP  go_function ubiquitin-protein ligase activity|GO:0004842|18178771|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|18178771|IPI  product UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4); protein binding / ubiquitin-protein ligase  note UBIQUITIN E2 VARIANT 1D-4 (UEV1D-4); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: postreplication repair, response to DNA damage stimulus; LOCATED IN: UBC13-MMS2 complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme family protein (TAIR:AT2G36060.2); Has 1001 Blast hits to 1001 proteins in 172 species: Archae - 0; Bacteria - 0; Metazoa - 573; Fungi - 109; Plants - 175; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).  protein_id AT3G52560.2p  transcript_id AT3G52560.2  protein_id AT3G52560.2p  transcript_id AT3G52560.2  
At3g52560	chr3:019495921	0.0	C/19495921-19495954,19495269-19495408,19494903-19495028,19494678-19494818	AT3G52560.1  CDS  gene_syn F3C22.2, METHYL METHANESULFONATE2 ZWEI HOMOLOGE 4, MMZ4, UBIQUITIN E2 VARIANT 1D, UBIQUITIN E2 VARIANT 1D-4, UEV1D, UEV1D-4  gene UEV1D-4  function MMZ4/UEV1D encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1D-4, a predicted splice variant, can interact relatively weakly with UBC35/UBC13A and UBC36/UBC13B in a yeast-2-hybrid UEV1D-4 can also significantly, but not totally, functionally complement an mms2 mutation in budding yeast by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS. uev1d-1 mutants are more sensitive than wild type plants to the DNA damaging agent MMS in seed germination and pollen germination assays.  go_component UBC13-MMS2 complex|GO:0031372|18178771|IPI  go_process postreplication repair|GO:0006301|18178771|IGI  go_process response to DNA damage stimulus|GO:0006974|18178771|IMP  go_function ubiquitin-protein ligase activity|GO:0004842|18178771|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|18178771|IPI  product UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4); protein binding / ubiquitin-protein ligase  note UBIQUITIN E2 VARIANT 1D-4 (UEV1D-4); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: postreplication repair, response to DNA damage stimulus; LOCATED IN: UBC13-MMS2 complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme family protein (TAIR:AT2G36060.1); Has 2025 Blast hits to 2025 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 1095; Fungi - 259; Plants - 359; Viruses - 0; Other Eukaryotes - 312 (source: NCBI BLink).  protein_id AT3G52560.1p  transcript_id AT3G52560.1  protein_id AT3G52560.1p  transcript_id AT3G52560.1  
At3g52561	chr3:019497188	0.0	C/19497188-19497487	AT3G52561.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 54 Blast hits to 54 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G52561.1p  transcript_id AT3G52561.1  protein_id AT3G52561.1p  transcript_id AT3G52561.1  
At3g52565	chr3:019500988	0.0	W/19500988-19501067	AT3G52565.1  tRNA  gene_syn 67282.TRNA-LEU-1, 67283.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: TAG)  transcript_id AT3G52565.1  
At3g52570	chr3:019501145	0.0	W/19501145-19501403,19501483-19501721,19501870-19501982,19502314-19502454,19502540-19502795	AT3G52570.1  CDS  gene_syn F3C22.3  go_component mitochondrion|GO:0005739|17137349|IDA  go_function ATP binding|GO:0005524|17137349|IDA  product ATP binding  note ATP binding; FUNCTIONS IN: ATP binding; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT4G10030.1); Has 1653 Blast hits to 1653 proteins in 547 species: Archae - 7; Bacteria - 978; Metazoa - 145; Fungi - 101; Plants - 46; Viruses - 0; Other Eukaryotes - 376 (source: NCBI BLink).  protein_id AT3G52570.1p  transcript_id AT3G52570.1  protein_id AT3G52570.1p  transcript_id AT3G52570.1  
At3g52580	chr3:019503324	0.0	W/19503324-19503326,19503598-19503717,19503795-19503840,19504237-19504322,19504419-19504548,19504634-19504701	AT3G52580.1  CDS  gene_syn F3C22.6  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S14 (RPS14C)  note 40S ribosomal protein S14 (RPS14C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S11 (InterPro:IPR001971), Ribosomal S11, conserved site (InterPro:IPR018102); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S14 (RPS14B) (TAIR:AT3G11510.1); Has 6258 Blast hits to 6258 proteins in 1752 species: Archae - 169; Bacteria - 2837; Metazoa - 489; Fungi - 109; Plants - 512; Viruses - 0; Other Eukaryotes - 2142 (source: NCBI BLink).  protein_id AT3G52580.1p  transcript_id AT3G52580.1  protein_id AT3G52580.1p  transcript_id AT3G52580.1  
At3g52590	chr3:019505668	0.0	W/19505668-19505770,19505858-19505944,19506030-19506132,19506512-19506578,19506655-19506681	AT3G52590.1  CDS  gene_syn EARLY-RESPONSIVE TO DEHYDRATION 16, EMB2167, EMBRYO DEFECTIVE 2167, ERD16, F3C22.8, HAP4, HAPLESS 4, UBIQUITIN EXTENSION PROTEIN 1, UBQ1  gene UBQ1  function Ubiquitin extension protein  go_component ribosome|GO:0005840|2165066|IDA  go_component ribosome|GO:0005840|2165066|IEP  go_process response to water deprivation|GO:0009414|8075396|IEP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process protein ubiquitination|GO:0016567|2165066|TAS  go_function structural constituent of ribosome|GO:0003735|2165066|ISS  go_function protein binding|GO:0005515||ISS  product UBQ1 (UBIQUITIN EXTENSION PROTEIN 1); protein binding / structural constituent of ribosome  note UBIQUITIN EXTENSION PROTEIN 1 (UBQ1); FUNCTIONS IN: structural constituent of ribosome, protein binding; INVOLVED IN: embryonic development ending in seed dormancy, response to water deprivation, protein ubiquitination; LOCATED IN: ribosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L40e (InterPro:IPR001975), Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: ubiquitin extension protein 2 (UBQ2) / 60S ribosomal protein L40 (RPL40A) (TAIR:AT2G36170.1); Has 9166 Blast hits to 5436 proteins in 615 species: Archae - 0; Bacteria - 7; Metazoa - 4228; Fungi - 959; Plants - 1966; Viruses - 162; Other Eukaryotes - 1844 (source: NCBI BLink).  protein_id AT3G52590.1p  transcript_id AT3G52590.1  protein_id AT3G52590.1p  transcript_id AT3G52590.1  
At3g52600	chr3:019507569	0.0	C/19507569-19508833,19507359-19507473,19507080-19507274	AT3G52600.2  CDS  gene_syn Arabidopsis thaliana cell wall invertase 2, AtcwINV2, F3C22.4  gene AtcwINV2  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product AtcwINV2 (Arabidopsis thaliana cell wall invertase 2); hydrolase, hydrolyzing O-glycosyl compounds  note Arabidopsis thaliana cell wall invertase 2 (AtcwINV2); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 32 (InterPro:IPR001362), Glycosyl hydrolases family 32, N-terminal (InterPro:IPR013148), Glycosyl hydrolase family 32, C-terminal (InterPro:IPR013189), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: AtcwINV4 (Arabidopsis thaliana cell wall invertase 4); hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT2G36190.1); Has 2173 Blast hits to 2155 proteins in 631 species: Archae - 4; Bacteria - 1180; Metazoa - 5; Fungi - 182; Plants - 637; Viruses - 0; Other Eukaryotes - 165 (source: NCBI BLink).  protein_id AT3G52600.2p  transcript_id AT3G52600.2  protein_id AT3G52600.2p  transcript_id AT3G52600.2  
At3g52600	chr3:019509090	0.0	C/19509090-19509273,19508934-19508942,19507569-19508838,19507359-19507473,19507080-19507274	AT3G52600.1  CDS  gene_syn Arabidopsis thaliana cell wall invertase 2, AtcwINV2, F3C22.4  gene AtcwINV2  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process sucrose catabolic process, using beta-fructofuranosidase|GO:0019575||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product AtcwINV2 (Arabidopsis thaliana cell wall invertase 2); hydrolase, hydrolyzing O-glycosyl compounds  note Arabidopsis thaliana cell wall invertase 2 (AtcwINV2); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 32 (InterPro:IPR001362), Glycoside hydrolase, family 32, active site (InterPro:IPR018053), Glycosyl hydrolases family 32, N-terminal (InterPro:IPR013148), Glycosyl hydrolase family 32, C-terminal (InterPro:IPR013189), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: AtcwINV4 (Arabidopsis thaliana cell wall invertase 4); hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT2G36190.1); Has 2210 Blast hits to 2188 proteins in 633 species: Archae - 4; Bacteria - 1192; Metazoa - 5; Fungi - 190; Plants - 638; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink).  protein_id AT3G52600.1p  transcript_id AT3G52600.1  protein_id AT3G52600.1p  transcript_id AT3G52600.1  
At3g52605	chr3:019510338	0.0	C/19510338-19511326	AT3G52605.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT3G52610  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G52605.2  
At3g52605	chr3:019510344	0.0	C/19510344-19511335	AT3G52605.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT3G52610  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G52605.1  
At3g52610	chr3:019510513	0.0	W/19510513-19511310,19511664-19511832,19512087-19512547	AT3G52610.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 38 Blast hits to 37 proteins in 11 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G52610.1p  transcript_id AT3G52610.1  protein_id AT3G52610.1p  transcript_id AT3G52610.1  
At3g52620	chr3:019513113	0.0	W/19513113-19513226,19513407-19513556	AT3G52620.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G52620.1p  transcript_id AT3G52620.1  protein_id AT3G52620.1p  transcript_id AT3G52620.1  
At3g52630	chr3:019514184	0.0	W/19514184-19514442,19514532-19514596	AT3G52630.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Replication factor A protein 3 (InterPro:IPR013970), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G18590.1); Has 58 Blast hits to 58 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G52630.1p  transcript_id AT3G52630.1  protein_id AT3G52630.1p  transcript_id AT3G52630.1  
At3g52630	chr3:019514184	0.0	W/19514184-19514442,19514532-19514596	AT3G52630.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Replication factor A protein 3 (InterPro:IPR013970), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G18590.1); Has 58 Blast hits to 58 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G52630.2p  transcript_id AT3G52630.2  protein_id AT3G52630.2p  transcript_id AT3G52630.2  
At3g52640	chr3:019520206	0.0	C/19520206-19520290,19520002-19520115,19519803-19519917,19519159-19519241,19518934-19519010,19518455-19518532,19517765-19517836,19517589-19517662,19517358-19517490,19517179-19517250,19516973-19517092,19516683-19516754,19516436-19516576,19515625-19516245	AT3G52640.3  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process protein processing|GO:0016485||IEA  product nicastrin-related  note nicastrin-related; INVOLVED IN: protein processing; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nicastrin (InterPro:IPR008710); Has 193 Blast hits to 191 proteins in 65 species: Archae - 0; Bacteria - 2; Metazoa - 141; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT3G52640.3p  transcript_id AT3G52640.3  protein_id AT3G52640.3p  transcript_id AT3G52640.3  
At3g52640	chr3:019520206	0.0	C/19520206-19520290,19520002-19520115,19519803-19519917,19519159-19519241,19518934-19519010,19518455-19518532,19517765-19517836,19517589-19517662,19517358-19517490,19517179-19517250,19516973-19517092,19516683-19516754,19516436-19516576,19515629-19516245,19515078-19515342	AT3G52640.2  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process protein processing|GO:0016485||IEA  product nicastrin-related  note nicastrin-related; INVOLVED IN: protein processing; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nicastrin (InterPro:IPR008710); Has 194 Blast hits to 191 proteins in 65 species: Archae - 0; Bacteria - 2; Metazoa - 141; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT3G52640.2p  transcript_id AT3G52640.2  protein_id AT3G52640.2p  transcript_id AT3G52640.2  
At3g52640	chr3:019520206	0.0	C/19520206-19520290,19520002-19520115,19519803-19519917,19519159-19519241,19518934-19519010,19518455-19518532,19517765-19517836,19517589-19517662,19517358-19517490,19517179-19517250,19516973-19517092,19516683-19516754,19516436-19516576,19516161-19516245,19515629-19516073,19515078-19515342	AT3G52640.1  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process protein processing|GO:0016485||IEA  product nicastrin-related  note nicastrin-related; INVOLVED IN: protein processing; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nicastrin (InterPro:IPR008710); Has 192 Blast hits to 189 proteins in 65 species: Archae - 0; Bacteria - 2; Metazoa - 141; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT3G52640.1p  transcript_id AT3G52640.1  protein_id AT3G52640.1p  transcript_id AT3G52640.1  
At3g52660	chr3:019522598	0.0	W/19522598-19522957,19523035-19523151,19523225-19523365,19523547-19523726,19523855-19524062,19524148-19524326,19524415-19524500,19524591-19524735	AT3G52660.1  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT4G00830.2); Has 38310 Blast hits to 18447 proteins in 765 species: Archae - 82; Bacteria - 1496; Metazoa - 21619; Fungi - 3054; Plants - 3146; Viruses - 763; Other Eukaryotes - 8150 (source: NCBI BLink).  protein_id AT3G52660.1p  transcript_id AT3G52660.1  protein_id AT3G52660.1p  transcript_id AT3G52660.1  
At3g52660	chr3:019522598	0.0	W/19522598-19522957,19523035-19523151,19523225-19523365,19523547-19523726,19523855-19524062,19524148-19524326,19524415-19524500,19524591-19524735	AT3G52660.2  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT4G00830.2); Has 38310 Blast hits to 18447 proteins in 765 species: Archae - 82; Bacteria - 1496; Metazoa - 21619; Fungi - 3054; Plants - 3146; Viruses - 763; Other Eukaryotes - 8150 (source: NCBI BLink).  protein_id AT3G52660.2p  transcript_id AT3G52660.2  protein_id AT3G52660.2p  transcript_id AT3G52660.2  
At3g52670	chr3:019525247	0.0	W/19525247-19525427,19525527-19526101,19526233-19526319,19526426-19526737	AT3G52670.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G52680.2); Has 1292 Blast hits to 1248 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1290; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G52670.1p  transcript_id AT3G52670.1  protein_id AT3G52670.1p  transcript_id AT3G52670.1  
At3g52680	chr3:019527075	0.0	W/19527075-19527100,19527326-19528196,19528276-19528410,19528500-19528838	AT3G52680.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G00160.1); Has 1517 Blast hits to 1484 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1517; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G52680.1p  transcript_id AT3G52680.1  protein_id AT3G52680.1p  transcript_id AT3G52680.1  
At3g52680	chr3:019527075	0.0	W/19527075-19527100,19527326-19528196,19528276-19528410,19528500-19528838	AT3G52680.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G00160.1); Has 1517 Blast hits to 1484 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1517; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G52680.2p  transcript_id AT3G52680.2  protein_id AT3G52680.2p  transcript_id AT3G52680.2  
At3g52690	chr3:019530736	0.0	W/19530736-19531197,19531282-19531410,19531503-19531811	AT3G52690.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G52680.2); Has 462 Blast hits to 454 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 462; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G52690.1p  transcript_id AT3G52690.1  protein_id AT3G52690.1p  transcript_id AT3G52690.1  
At3g52700	chr3:019532708	0.0	C/19532708-19533093,19532610-19532631	AT3G52700.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G52700.2p  transcript_id AT3G52700.2  protein_id AT3G52700.2p  transcript_id AT3G52700.2  
At3g52705	chr3:019533920	0.0	C/19533920-19534238	AT3G52705.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 7.3e-24 P-value blast match to reverse transcriptase (Ty1_Copia-element) (Arabidopsis thaliana)  
At3g52710	chr3:019534638	0.0	W/19534638-19535507	AT3G52710.1  CDS  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36220.1); Has 43 Blast hits to 43 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G52710.1p  transcript_id AT3G52710.1  protein_id AT3G52710.1p  transcript_id AT3G52710.1  
At3g52700	chr3:019538342	0.0	C/19538342-19538403,19533179-19533207,19532708-19533116,19532416-19532566	AT3G52700.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G52700.1p  transcript_id AT3G52700.1  protein_id AT3G52700.1p  transcript_id AT3G52700.1  
At3g52720	chr3:019541044	0.0	C/19541044-19541116,19540431-19540752,19539891-19539993,19539617-19539811	AT3G52720.2  CDS  gene_syn A. THALIANA ALPHA CARBONIC ANHYDRASE 1, ACA1, ALPHA CARBONIC ANHYDRASE 1, ATACA1  gene ACA1  go_component endomembrane system|GO:0012505||IEA  go_process one-carbon compound metabolic process|GO:0006730||IEA  go_function carbonate dehydratase activity|GO:0004089||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process one-carbon compound metabolic process|GO:0006730||ISS  go_function carbonate dehydratase activity|GO:0004089||ISS  go_function zinc ion binding|GO:0008270||ISS  product ACA1 (ALPHA CARBONIC ANHYDRASE 1); carbonate dehydratase/ zinc ion binding  note ALPHA CARBONIC ANHYDRASE 1 (ACA1); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: one-carbon compound metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, alpha-class, catalytic domain (InterPro:IPR001148), Carbonic anhydrase, CAH1-like (InterPro:IPR018340), Carbonic anhydrase, alpha-class, conserved site (InterPro:IPR018338); BEST Arabidopsis thaliana protein match is: ATACA2 (ALPHA CARBONIC ANHYDRASE 2); carbonate dehydratase/ zinc ion binding (TAIR:AT2G28210.1); Has 2288 Blast hits to 2279 proteins in 291 species: Archae - 0; Bacteria - 338; Metazoa - 1639; Fungi - 52; Plants - 153; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).  protein_id AT3G52720.2p  transcript_id AT3G52720.2  protein_id AT3G52720.2p  transcript_id AT3G52720.2  
At3g52720	chr3:019541044	0.0	C/19541044-19541116,19540431-19540752,19539891-19539993,19539629-19539811,19538804-19538977	AT3G52720.1  CDS  gene_syn A. THALIANA ALPHA CARBONIC ANHYDRASE 1, ACA1, ALPHA CARBONIC ANHYDRASE 1, ATACA1  gene ACA1  go_component endomembrane system|GO:0012505||IEA  go_process one-carbon compound metabolic process|GO:0006730||IEA  go_function carbonate dehydratase activity|GO:0004089||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process one-carbon compound metabolic process|GO:0006730||ISS  go_function carbonate dehydratase activity|GO:0004089||ISS  go_function zinc ion binding|GO:0008270||ISS  product ACA1 (ALPHA CARBONIC ANHYDRASE 1); carbonate dehydratase/ zinc ion binding  note ALPHA CARBONIC ANHYDRASE 1 (ACA1); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: one-carbon compound metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, alpha-class, catalytic domain (InterPro:IPR001148), Carbonic anhydrase, CAH1-like (InterPro:IPR018340), Carbonic anhydrase, alpha-class, conserved site (InterPro:IPR018338); BEST Arabidopsis thaliana protein match is: ACA7 (ALPHA CARBONIC ANHYDRASE 7); carbonate dehydratase/ zinc ion binding (TAIR:AT1G08080.1); Has 2424 Blast hits to 2412 proteins in 310 species: Archae - 0; Bacteria - 340; Metazoa - 1744; Fungi - 52; Plants - 158; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink).  protein_id AT3G52720.1p  transcript_id AT3G52720.1  protein_id AT3G52720.1p  transcript_id AT3G52720.1  
At3g52730	chr3:019544048	0.0	C/19544048-19544167,19543699-19543746,19543146-19543196	AT3G52730.1  CDS  go_component membrane|GO:0016020|17432890|IDA  go_process mitochondrial electron transport, ubiquinol to cytochrome c|GO:0006122||IEA  go_function ubiquinol-cytochrome-c reductase activity|GO:0008121||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial envelope|GO:0005740||ISS  go_component mitochondrial respiratory chain complex III|GO:0005750|18189341|IDA  go_process mitochondrial electron transport, ubiquinol to cytochrome c|GO:0006122||ISS  go_function ubiquinol-cytochrome-c reductase activity|GO:0008121||ISS  product ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein  note ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein; FUNCTIONS IN: ubiquinol-cytochrome-c reductase activity; INVOLVED IN: mitochondrial electron transport, ubiquinol to cytochrome c; LOCATED IN: mitochondrial envelope, mitochondrion, mitochondrial respiratory chain complex III, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquinol-cytochrome C reductase, UQCRX/QCR9-like (InterPro:IPR008027); Has 46 Blast hits to 46 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 16; Plants - 27; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G52730.1p  transcript_id AT3G52730.1  protein_id AT3G52730.1p  transcript_id AT3G52730.1  
At3g52740	chr3:019546446	0.0	C/19546446-19546868	AT3G52740.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44450.1); Has 33 Blast hits to 33 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G52740.1p  transcript_id AT3G52740.1  protein_id AT3G52740.1p  transcript_id AT3G52740.1  
At3g52742	chr3:019547358	0.0	C/19547358-19549011	AT3G52742.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G52742.1  
At3g52748	chr3:019548972	0.0	W/19548972-19549589	AT3G52748.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G52748.1  
At3g52750	chr3:019551815	0.0	C/19551815-19552435,19551148-19551447,19550967-19551057,19550465-19550589,19550224-19550316,19550073-19550138,19549841-19549966	AT3G52750.1  CDS  gene_syn FTSZ2-2  gene FTSZ2-2  function Nuclear gene that encodes a plastidial division protein (FtsZ2-2).  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process protein polymerization|GO:0051258||IEA  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_component chloroplast|GO:0009507|11554751|IDA  go_component chloroplast stroma|GO:0009570|11743110|IDA  go_function structural molecule activity|GO:0005198||ISS  product FTSZ2-2; GTP binding / GTPase/ structural molecule  note FTSZ2-2; FUNCTIONS IN: structural molecule activity, GTP binding, GTPase activity; INVOLVED IN: protein polymerization; LOCATED IN: chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cell division protein FtsZ, N-terminal (InterPro:IPR000158), Tubulin/FtsZ, GTPase (InterPro:IPR003008), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: FTSZ2-1; protein binding / structural molecule (TAIR:AT2G36250.2); Has 7609 Blast hits to 7609 proteins in 1847 species: Archae - 286; Bacteria - 3592; Metazoa - 4; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 3630 (source: NCBI BLink).  protein_id AT3G52750.1p  transcript_id AT3G52750.1  protein_id AT3G52750.1p  transcript_id AT3G52750.1  
At3g52760	chr3:019553932	0.0	C/19553932-19554705	AT3G52760.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane Yip1 family protein  note integral membrane Yip1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Yip1 domain (InterPro:IPR006977); BEST Arabidopsis thaliana protein match is: integral membrane Yip1 family protein (TAIR:AT2G36300.1); Has 419 Blast hits to 419 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 233; Fungi - 81; Plants - 41; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT3G52760.1p  transcript_id AT3G52760.1  protein_id AT3G52760.1p  transcript_id AT3G52760.1  
At3g52765	chr3:019555036	0.0	W/19555036-19555107	AT3G52765.1  tRNA  gene_syn 67283.TRNA-ASP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asp (anticodon: GTC)  transcript_id AT3G52765.1  
At3g52770	chr3:019557891	0.0	C/19557891-19558094	AT3G52770.1  CDS  gene_syn LITTLE ZIPPER 3, ZPR3  gene ZPR3  function ZPR3 is a small-leucine zipper containing protein that is involved in the establishment of leaf polarity.  go_component nucleus|GO:0005634|18408069|IDA  go_process adaxial/abaxial axis specification|GO:0009943|18055602|IMP  go_process meristem maintenance|GO:0010073|18408069|IGI  go_process regulation of meristem growth|GO:0010075|18055602|IMP  go_process leaf vascular tissue pattern formation|GO:0010305|18055602|IMP  go_process leaf shaping|GO:0010358|18055602|IMP  go_process negative regulation of transcription factor activity|GO:0043433|18408069|IPI  go_function protein binding|GO:0005515|18055602|IPI  product ZPR3 (LITTLE ZIPPER 3); protein binding  note LITTLE ZIPPER 3 (ZPR3); FUNCTIONS IN: protein binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: central zone, shoot apex, embryo; EXPRESSED DURING: D bilateral stage, E expanded cotyledon stage; Has 44 Blast hits to 44 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G52770.1p  transcript_id AT3G52770.1  protein_id AT3G52770.1p  transcript_id AT3G52770.1  
At3g52780	chr3:019564058	0.0	C/19564058-19564195,19562844-19563141,19562462-19562705,19561962-19562296,19561812-19561882	AT3G52780.2  CDS  gene_syn ATPAP20, PAP20  gene PAP20  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function acid phosphatase activity|GO:0003993|16244908|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PAP20; acid phosphatase/ protein serine/threonine phosphatase  note PAP20; FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: PAP22 (PURPLE ACID PHOSPHATASE 22); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT3G52820.1); Has 1335 Blast hits to 1323 proteins in 288 species: Archae - 0; Bacteria - 418; Metazoa - 176; Fungi - 58; Plants - 430; Viruses - 0; Other Eukaryotes - 253 (source: NCBI BLink).  protein_id AT3G52780.2p  transcript_id AT3G52780.2  protein_id AT3G52780.2p  transcript_id AT3G52780.2  
At3g52780	chr3:019564058	0.0	C/19564058-19564195,19562844-19563141,19562462-19562705,19561966-19562296,19561796-19561884,19561525-19561708	AT3G52780.1  CDS  gene_syn ATPAP20, PAP20  gene PAP20  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function acid phosphatase activity|GO:0003993|16244908|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PAP20; acid phosphatase/ protein serine/threonine phosphatase  note PAP20; FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: PAP22 (PURPLE ACID PHOSPHATASE 22); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT3G52820.1); Has 1372 Blast hits to 1357 proteins in 286 species: Archae - 2; Bacteria - 419; Metazoa - 178; Fungi - 60; Plants - 437; Viruses - 0; Other Eukaryotes - 276 (source: NCBI BLink).  protein_id AT3G52780.1p  transcript_id AT3G52780.1  protein_id AT3G52780.1p  transcript_id AT3G52780.1  
At3g52790	chr3:019566004	0.0	C/19566004-19566333	AT3G52790.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process cell wall macromolecule catabolic process|GO:0016998||IEA  go_process cell wall macromolecule catabolic process|GO:0016998||ISS  go_function molecular_function|GO:0003674||ND  product peptidoglycan-binding LysM domain-containing protein  note peptidoglycan-binding LysM domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392); BEST Arabidopsis thaliana protein match is: peptidoglycan-binding LysM domain-containing protein (TAIR:AT5G62150.1); Has 30 Blast hits to 30 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G52790.1p  transcript_id AT3G52790.1  protein_id AT3G52790.1p  transcript_id AT3G52790.1  
At3g52800	chr3:019569806	0.0	W/19569806-19570318	AT3G52800.1  CDS  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process response to chitin|GO:0010200|17722694|IEP  product zinc finger (AN1-like) family protein  note zinc finger (AN1-like) family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: response to chitin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: zinc finger (AN1-like) family protein (TAIR:AT2G36320.1); Has 767 Blast hits to 761 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 385; Fungi - 2; Plants - 269; Viruses - 6; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT3G52800.1p  transcript_id AT3G52800.1  protein_id AT3G52800.1p  transcript_id AT3G52800.1  
At3g52810	chr3:019573482	0.0	C/19573482-19573640,19573091-19573382,19572001-19572395,19571622-19571795,19571423-19571511,19571089-19571293	AT3G52810.1  CDS  gene_syn ATPAP21, PAP21, PURPLE ACID PHOSPHATASE 21  gene PAP21  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function acid phosphatase activity|GO:0003993|16244908|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PAP21 (PURPLE ACID PHOSPHATASE 21); acid phosphatase/ protein serine/threonine phosphatase  note PURPLE ACID PHOSPHATASE 21 (PAP21); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, sepal, fruit, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: PAP22 (PURPLE ACID PHOSPHATASE 22); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT3G52820.1); Has 1367 Blast hits to 1357 proteins in 296 species: Archae - 2; Bacteria - 415; Metazoa - 231; Fungi - 60; Plants - 431; Viruses - 0; Other Eukaryotes - 228 (source: NCBI BLink).  protein_id AT3G52810.1p  transcript_id AT3G52810.1  protein_id AT3G52810.1p  transcript_id AT3G52810.1  
At3g52820	chr3:019576792	0.0	C/19576792-19576938,19576072-19576363,19575368-19575762,19574793-19574966,19574597-19574685,19574236-19574443	AT3G52820.1  CDS  gene_syn ATPAP22, PAP22, PURPLE ACID PHOSPHATASE 22  gene PAP22  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function acid phosphatase activity|GO:0003993|16244908|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PAP22 (PURPLE ACID PHOSPHATASE 22); acid phosphatase/ protein serine/threonine phosphatase  note PURPLE ACID PHOSPHATASE 22 (PAP22); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: PAP21 (PURPLE ACID PHOSPHATASE 21); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT3G52810.1); Has 1327 Blast hits to 1314 proteins in 282 species: Archae - 2; Bacteria - 387; Metazoa - 214; Fungi - 58; Plants - 439; Viruses - 0; Other Eukaryotes - 227 (source: NCBI BLink).  protein_id AT3G52820.1p  transcript_id AT3G52820.1  protein_id AT3G52820.1p  transcript_id AT3G52820.1  
At3g52830	chr3:019578005	0.0	W/19578005-19578265	AT3G52830.1  CDS  gene_syn F8J2.1  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT5G54700.1); Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G52830.1p  transcript_id AT3G52830.1  protein_id AT3G52830.1p  transcript_id AT3G52830.1  
At3g52840	chr3:019581244	0.0	W/19581244-19581417,19581646-19581741,19581834-19581946,19582029-19582095,19582193-19582285,19582361-19582504,19583152-19583240,19583347-19583452,19583535-19583619,19583700-19583818,19583904-19584065,19584329-19584504,19584610-19584719,19584800-19584909,19585013-19585123,19585213-19585323,19585697-19585902,19585986-19586097	AT3G52840.1  CDS  gene_syn BGAL2, beta-galactosidase 2  gene BGAL2  go_component apoplast|GO:0048046|18538804|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process lactose catabolic process|GO:0005990||IEA  go_process lactose catabolic process, using glucoside 3-dehydrogenase|GO:0019513||IEA  go_process lactose catabolic process via UDP-galactose|GO:0019515||IEA  go_function catalytic activity|GO:0003824||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  go_function cation binding|GO:0043169||IEA  go_function beta-galactosidase activity|GO:0004565||ISS  product BGAL2 (beta-galactosidase 2); beta-galactosidase/ catalytic/ cation binding  note beta-galactosidase 2 (BGAL2); FUNCTIONS IN: cation binding, beta-galactosidase activity, catalytic activity; INVOLVED IN: lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process; LOCATED IN: apoplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: BGAL12 (beta-galactosidase 12); beta-galactosidase/ catalytic/ cation binding (TAIR:AT4G26140.1); Has 1237 Blast hits to 1164 proteins in 255 species: Archae - 11; Bacteria - 346; Metazoa - 335; Fungi - 120; Plants - 370; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT3G52840.1p  transcript_id AT3G52840.1  protein_id AT3G52840.1p  transcript_id AT3G52840.1  
At3g52850	chr3:019587999	0.0	W/19587999-19588287,19588386-19589078,19589351-19589439,19589559-19589628,19589722-19589805,19589980-19590056,19590156-19590237,19590659-19590741,19590833-19590899,19591162-19591290,19591383-19591495,19591595-19591690	AT3G52850.1  CDS  gene_syn ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, ATELP, ATELP1, ATVSR1, BP-80, BP80, BP80B, VACUOLAR SORTING RECEPTOR HOMOLOG 1, VSR-1, VSR1  gene VSR1  function Encodes the Vacuolar Sorting Receptor-1 (VSR-1)/Epidermal Growth Factor Receptor-like protein1(VSR-1/ATELP1). Binds vacuolar targeting signals. Involved in sorting seed storage proteins into vacuoles.  go_component Golgi apparatus|GO:0005794|10871276|IDA  go_component trans-Golgi network|GO:0005802|10871276|TAS  go_component trans-Golgi network|GO:0005802|9159954|IDA  go_component plasma membrane|GO:0005886|10561538|IDA  go_component plasma membrane|GO:0005886|10561538|IEP  go_component plasma membrane|GO:0005886|10561538|ISS  go_component integral to plasma membrane|GO:0005887||ISS  go_component Golgi transport complex|GO:0017119|10888666|IPI  go_process protein targeting to vacuole|GO:0006623|10871276|TAS  go_process protein targeting to vacuole|GO:0006623|17293568|IMP  go_process protein targeting to vacuole|GO:0006623||ISS  go_process Golgi to vacuole transport|GO:0006896|17012602|IDA  go_process Golgi to vacuole transport|GO:0006896|9159954|ISS  go_process vacuolar transport|GO:0007034|15632053|IMP  go_function amino-terminal vacuolar sorting propeptide binding|GO:0009940|10871276|IDA  product VSR1 (VACUOLAR SORTING RECEPTOR HOMOLOG 1); amino-terminal vacuolar sorting propeptide binding  note VACUOLAR SORTING RECEPTOR HOMOLOG 1 (VSR1); FUNCTIONS IN: amino-terminal vacuolar sorting propeptide binding; INVOLVED IN: vacuolar transport, Golgi to vacuole transport, protein targeting to vacuole; LOCATED IN: trans-Golgi network, Golgi apparatus, plasma membrane, integral to plasma membrane, Golgi transport complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), EGF-type aspartate/asparagine hydroxylation conserved site (InterPro:IPR000152), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-like, type 3 (InterPro:IPR000742), Growth factor, receptor (InterPro:IPR009030), EGF-like region, conserved site (InterPro:IPR013032); BEST Arabidopsis thaliana protein match is: vacuolar sorting receptor, putative (TAIR:AT2G30290.1); Has 11056 Blast hits to 5053 proteins in 182 species: Archae - 0; Bacteria - 61; Metazoa - 10199; Fungi - 2; Plants - 319; Viruses - 0; Other Eukaryotes - 475 (source: NCBI BLink).  protein_id AT3G52850.1p  transcript_id AT3G52850.1  protein_id AT3G52850.1p  transcript_id AT3G52850.1  
At3g52860	chr3:019592522	0.0	C/19592522-19592741,19592216-19592331,19591998-19592132	AT3G52860.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; Has 68 Blast hits to 68 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 36; Fungi - 13; Plants - 13; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G52860.1p  transcript_id AT3G52860.1  protein_id AT3G52860.1p  transcript_id AT3G52860.1  
At3g52870	chr3:019595457	0.0	C/19595457-19595686,19595232-19595346,19594955-19595020,19594771-19594859,19594565-19594652,19594332-19594478,19594142-19594234,19593912-19594013,19593365-19593805	AT3G52870.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product calmodulin-binding family protein  note calmodulin-binding family protein; FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: calmodulin-binding family protein (TAIR:AT3G13600.1); Has 194 Blast hits to 147 proteins in 38 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 80; Plants - 105; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G52870.1p  transcript_id AT3G52870.1  protein_id AT3G52870.1p  transcript_id AT3G52870.1  
At3g52880	chr3:019604316	0.0	C/19604316-19604366,19603667-19603738,19603488-19603539,19603302-19603382,19603022-19603140,19602711-19602930,19602513-19602631,19602196-19602321,19601961-19602101,19601477-19601800	AT3G52880.1  CDS  gene_syn ATMDAR1, monodehydroascorbate reductase 1  gene ATMDAR1  function Encodes a peroxisomal monodehydroascorbate reductase, involved in the ascorbate-glutathione cycle which removes toxic H2O2  go_component peroxisome|GO:0005777|17951448|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component peroxisomal matrix|GO:0005782|16146528|IDA  go_process peptidyl-cysteine S-nitrosylation|GO:0018119|18297659|IDA  go_process hydrogen peroxide catabolic process|GO:0042744|16146528|TAS  go_function monodehydroascorbate reductase (NADH) activity|GO:0016656|16146528|IDA  product monodehydroascorbate reductase, putative  note monodehydroascorbate reductase 1 (ATMDAR1); FUNCTIONS IN: monodehydroascorbate reductase (NADH) activity; INVOLVED IN: response to cadmium ion, peptidyl-cysteine S-nitrosylation, hydrogen peroxide catabolic process; LOCATED IN: peroxisomal matrix, apoplast, chloroplast, peroxisome, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156); BEST Arabidopsis thaliana protein match is: ATMDAR2; monodehydroascorbate reductase (NADH) (TAIR:AT5G03630.1); Has 18461 Blast hits to 18443 proteins in 1775 species: Archae - 388; Bacteria - 12678; Metazoa - 760; Fungi - 444; Plants - 401; Viruses - 0; Other Eukaryotes - 3790 (source: NCBI BLink).  protein_id AT3G52880.1p  transcript_id AT3G52880.1  protein_id AT3G52880.1p  transcript_id AT3G52880.1  
At3g52880	chr3:019604316	0.0	C/19604316-19604366,19603899-19603994,19603667-19603738,19603488-19603539,19603302-19603382,19603022-19603140,19602711-19602930,19602513-19602631,19602196-19602321,19601961-19602101,19601477-19601800	AT3G52880.2  CDS  gene_syn ATMDAR1, monodehydroascorbate reductase 1  gene ATMDAR1  function Encodes a peroxisomal monodehydroascorbate reductase, involved in the ascorbate-glutathione cycle which removes toxic H2O2  go_component peroxisome|GO:0005777|17951448|IDA  go_component peroxisomal matrix|GO:0005782|16146528|IDA  go_process peptidyl-cysteine S-nitrosylation|GO:0018119|18297659|IDA  go_process hydrogen peroxide catabolic process|GO:0042744|16146528|TAS  go_function monodehydroascorbate reductase (NADH) activity|GO:0016656|16146528|IDA  product monodehydroascorbate reductase, putative  note monodehydroascorbate reductase 1 (ATMDAR1); FUNCTIONS IN: monodehydroascorbate reductase (NADH) activity; INVOLVED IN: peptidyl-cysteine S-nitrosylation, hydrogen peroxide catabolic process; LOCATED IN: peroxisomal matrix, peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027); BEST Arabidopsis thaliana protein match is: ATMDAR2; monodehydroascorbate reductase (NADH) (TAIR:AT5G03630.1).  protein_id AT3G52880.2p  transcript_id AT3G52880.2  protein_id AT3G52880.2p  transcript_id AT3G52880.2  
At3g52890	chr3:019609150	0.0	W/19609150-19611071,19611150-19612032	AT3G52890.1  CDS  gene_syn KCBP-interacting protein kinase, KIPK, PROTEIN KINASE KIPK  gene KIPK  function KCBP-interacting protein kinase interacts specifically with the tail region of KCBP  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672|10788494|IDA  go_function protein binding|GO:0005515|10788494|IDA  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product KIPK (KCBP-interacting protein kinase); kinase/ protein binding / protein kinase  note KCBP-interacting protein kinase (KIPK); FUNCTIONS IN: protein binding, protein kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT2G36350.1); Has 92992 Blast hits to 65860 proteins in 2388 species: Archae - 27; Bacteria - 8168; Metazoa - 42371; Fungi - 9686; Plants - 11708; Viruses - 387; Other Eukaryotes - 20645 (source: NCBI BLink).  protein_id AT3G52890.1p  transcript_id AT3G52890.1  protein_id AT3G52890.1p  transcript_id AT3G52890.1  
At3g52890	chr3:019609150	0.0	W/19609150-19611071,19611150-19612032	AT3G52890.2  CDS  gene_syn KCBP-interacting protein kinase, KIPK, PROTEIN KINASE KIPK  gene KIPK  function KCBP-interacting protein kinase interacts specifically with the tail region of KCBP  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672|10788494|IDA  go_function protein binding|GO:0005515|10788494|IDA  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product KIPK (KCBP-interacting protein kinase); kinase/ protein binding / protein kinase  note KCBP-interacting protein kinase (KIPK); FUNCTIONS IN: protein binding, protein kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT2G36350.1); Has 92992 Blast hits to 65860 proteins in 2388 species: Archae - 27; Bacteria - 8168; Metazoa - 42371; Fungi - 9686; Plants - 11708; Viruses - 387; Other Eukaryotes - 20645 (source: NCBI BLink).  protein_id AT3G52890.2p  transcript_id AT3G52890.2  protein_id AT3G52890.2p  transcript_id AT3G52890.2  
At3g52900	chr3:019613134	0.0	W/19613134-19613361,19613431-19613541,19613610-19613690,19613778-19613852	AT3G52900.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF662 (InterPro:IPR007033); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36355.1); Has 213 Blast hits to 211 proteins in 51 species: Archae - 2; Bacteria - 8; Metazoa - 81; Fungi - 2; Plants - 71; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT3G52900.1p  transcript_id AT3G52900.1  protein_id AT3G52900.1p  transcript_id AT3G52900.1  
At3g52905	chr3:019615323	0.0	C/19615323-19615471,19615141-19615198,19614658-19614726,19614470-19614565,19614286-19614375,19614142-19614192	AT3G52905.1  CDS  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_process DNA repair|GO:0006281||IEA  go_process DNA recombination|GO:0006310||IEA  go_process response to DNA damage stimulus|GO:0006974||IEA  go_function recombinase activity|GO:0000150||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function nuclease activity|GO:0004518||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_component cellular_component|GO:0005575||ND  product DNA binding / hydrolase, acting on ester bonds / nuclease/ nucleic acid binding / recombinase  note DNA binding / hydrolase, acting on ester bonds / nuclease/ nucleic acid binding / recombinase; FUNCTIONS IN: hydrolase activity, acting on ester bonds, recombinase activity, DNA binding, nuclease activity, nucleic acid binding; INVOLVED IN: DNA repair, response to DNA damage stimulus, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, DNA recombination; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Resolvase, RNase H-like fold (InterPro:IPR006641), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Resolvase, holliday junction-type, YqgF-like (InterPro:IPR005227); Has 2745 Blast hits to 2745 proteins in 744 species: Archae - 0; Bacteria - 1542; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 1187 (source: NCBI BLink).  protein_id AT3G52905.1p  transcript_id AT3G52905.1  protein_id AT3G52905.1p  transcript_id AT3G52905.1  
At3g52910	chr3:019618037	0.0	C/19618037-19618268,19617745-19617939,19617150-19617447,19616177-19616594	AT3G52910.1  CDS  gene_syn AtGRF4, GROWTH-REGULATING FACTOR 4  gene AtGRF4  function Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flower.  go_component nucleus|GO:0005634|12974814|ISS  go_process leaf development|GO:0048366|12974814|TAS  go_function transcription activator activity|GO:0016563|12974814|ISS  product AtGRF4 (GROWTH-REGULATING FACTOR 4); transcription activator  note GROWTH-REGULATING FACTOR 4 (AtGRF4); FUNCTIONS IN: transcription activator activity; INVOLVED IN: leaf development; LOCATED IN: nucleus; EXPRESSED IN: apical meristem, flower, root; CONTAINS InterPro DOMAIN/s: Glutamine-Leucine-Glutamine, QLQ (InterPro:IPR014978), WRC (InterPro:IPR014977); BEST Arabidopsis thaliana protein match is: AtGRF3 (GROWTH-REGULATING FACTOR 3); transcription activator (TAIR:AT2G36400.1); Has 1055 Blast hits to 747 proteins in 36 species: Archae - 0; Bacteria - 4; Metazoa - 331; Fungi - 4; Plants - 352; Viruses - 0; Other Eukaryotes - 364 (source: NCBI BLink).  protein_id AT3G52910.1p  transcript_id AT3G52910.1  protein_id AT3G52910.1p  transcript_id AT3G52910.1  
At3g52920	chr3:019624601	0.0	W/19624601-19624828,19625315-19625425,19625658-19625738,19625859-19625981	AT3G52920.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  product unknown protein  note unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF662 (InterPro:IPR007033); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36410.1); Has 2316 Blast hits to 1969 proteins in 271 species: Archae - 54; Bacteria - 179; Metazoa - 1055; Fungi - 129; Plants - 121; Viruses - 9; Other Eukaryotes - 769 (source: NCBI BLink).  protein_id AT3G52920.1p  transcript_id AT3G52920.1  protein_id AT3G52920.1p  transcript_id AT3G52920.1  
At3g52920	chr3:019624601	0.0	W/19624601-19624828,19625315-19625425,19625658-19625738,19625868-19625981	AT3G52920.2  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  product unknown protein  note unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF662 (InterPro:IPR007033); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36410.2); Has 2724 Blast hits to 2187 proteins in 299 species: Archae - 56; Bacteria - 223; Metazoa - 1325; Fungi - 123; Plants - 123; Viruses - 5; Other Eukaryotes - 869 (source: NCBI BLink).  protein_id AT3G52920.2p  transcript_id AT3G52920.2  protein_id AT3G52920.2p  transcript_id AT3G52920.2  
At3g52930	chr3:019628847	0.0	C/19628847-19628874,19628297-19628524,19627383-19628203	AT3G52930.1  CDS  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function catalytic activity|GO:0003824||IEA  go_function fructose-bisphosphate aldolase activity|GO:0004332||IEA  go_component mitochondrion|GO:0005739|12953116|IDA  go_component mitochondrial envelope|GO:0005740|12953116|IDA  go_process pentose-phosphate shunt|GO:0006098||TAS  product fructose-bisphosphate aldolase, putative  note fructose-bisphosphate aldolase, putative; FUNCTIONS IN: fructose-bisphosphate aldolase activity, catalytic activity; INVOLVED IN: response to cadmium ion, response to salt stress, pentose-phosphate shunt; LOCATED IN: in 7 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741); BEST Arabidopsis thaliana protein match is: fructose-bisphosphate aldolase, putative (TAIR:AT2G36460.1); Has 4403 Blast hits to 4398 proteins in 740 species: Archae - 0; Bacteria - 427; Metazoa - 1257; Fungi - 2; Plants - 339; Viruses - 0; Other Eukaryotes - 2378 (source: NCBI BLink).  protein_id AT3G52930.1p  transcript_id AT3G52930.1  protein_id AT3G52930.1p  transcript_id AT3G52930.1  
At3g52940	chr3:019633065	0.0	C/19633065-19633112,19632850-19632967,19632688-19632758,19632519-19632575,19632317-19632408,19631929-19631976,19631661-19631781,19631527-19631573,19631350-19631435,19631130-19631206,19631030-19631053	AT3G52940.2  CDS  gene_syn ELL1, EXTRA-LONG-LIFESPAN 1, FACKEL, FK, HYD2  gene FK  function Encodes a sterol C-14 reductase required for cell division and expansion and is involved in proper organization of the embryo.  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process embryonic development ending in seed dormancy|GO:0009793|10859166|IMP  go_process sterol biosynthetic process|GO:0016126|10859166|TAS  go_process sterol biosynthetic process|GO:0016126|10859167|TAS  go_function delta14-sterol reductase activity|GO:0050613|10859166|IGI  go_function delta14-sterol reductase activity|GO:0050613|10859167|IMP  product FK (FACKEL); delta14-sterol reductase  note FACKEL (FK); FUNCTIONS IN: delta14-sterol reductase activity; INVOLVED IN: embryonic development ending in seed dormancy, sterol biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sterol reductase, conserved site (InterPro:IPR018083), Ergosterol biosynthesis ERG4/ERG24 (InterPro:IPR001171); BEST Arabidopsis thaliana protein match is: DWF5 (DWARF 5); sterol delta7 reductase (TAIR:AT1G50430.1); Has 676 Blast hits to 674 proteins in 138 species: Archae - 0; Bacteria - 34; Metazoa - 211; Fungi - 255; Plants - 109; Viruses - 3; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT3G52940.2p  transcript_id AT3G52940.2  protein_id AT3G52940.2p  transcript_id AT3G52940.2  
At3g52940	chr3:019633065	0.0	C/19633065-19633112,19632850-19632967,19632688-19632758,19632519-19632575,19632317-19632408,19631929-19631976,19631661-19631781,19631527-19631573,19631354-19631435,19631130-19631206,19630934-19631053,19630715-19630789,19630369-19630522	AT3G52940.1  CDS  gene_syn ELL1, EXTRA-LONG-LIFESPAN 1, FACKEL, FK, HYD2  gene FK  function Encodes a sterol C-14 reductase required for cell division and expansion and is involved in proper organization of the embryo.  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process embryonic development ending in seed dormancy|GO:0009793|10859166|IMP  go_process sterol biosynthetic process|GO:0016126|10859166|TAS  go_process sterol biosynthetic process|GO:0016126|10859167|TAS  go_function delta14-sterol reductase activity|GO:0050613|10859166|IGI  go_function delta14-sterol reductase activity|GO:0050613|10859167|IMP  product FK (FACKEL); delta14-sterol reductase  note FACKEL (FK); FUNCTIONS IN: delta14-sterol reductase activity; INVOLVED IN: embryonic development ending in seed dormancy, sterol biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sterol reductase, conserved site (InterPro:IPR018083), Ergosterol biosynthesis ERG4/ERG24 (InterPro:IPR001171); BEST Arabidopsis thaliana protein match is: DWF5 (DWARF 5); sterol delta7 reductase (TAIR:AT1G50430.1); Has 880 Blast hits to 876 proteins in 167 species: Archae - 0; Bacteria - 66; Metazoa - 239; Fungi - 265; Plants - 159; Viruses - 3; Other Eukaryotes - 148 (source: NCBI BLink).  protein_id AT3G52940.1p  transcript_id AT3G52940.1  protein_id AT3G52940.1p  transcript_id AT3G52940.1  
At3g52941	chr3:019633330	0.0	C/19633330-19633473	AT3G52941.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G52941.1p  transcript_id AT3G52941.1  protein_id AT3G52941.1p  transcript_id AT3G52941.1  
At3g52950	chr3:019634866	0.0	W/19634866-19636536	AT3G52950.1  CDS  go_component chloroplast|GO:0009507||IEA  product CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein  note CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (TAIR:AT2G36500.1); Has 4350 Blast hits to 3179 proteins in 762 species: Archae - 510; Bacteria - 2895; Metazoa - 2; Fungi - 91; Plants - 155; Viruses - 0; Other Eukaryotes - 697 (source: NCBI BLink).  protein_id AT3G52950.1p  transcript_id AT3G52950.1  protein_id AT3G52950.1p  transcript_id AT3G52950.1  
At3g52955	chr3:019637128	0.0	W/19637128-19637210	AT3G52955.1  tRNA  gene_syn 67284.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: TAA)  transcript_id AT3G52955.1  
At3g52957	chr3:019638399	0.0	C/19638399-19639278	AT3G52957.1  pseudogenic_transcript  pseudo  function Pseudogene of AT2G33200; F-box family protein  
At3g52960	chr3:019639699	0.0	W/19639699-19640403	AT3G52960.1  CDS  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_function oxidoreductase activity|GO:0016491||IEA  go_process peptidyl-cysteine S-nitrosylation|GO:0018119|18297659|IDA  go_function antioxidant activity|GO:0016209||ISS  product peroxiredoxin type 2, putative  note peroxiredoxin type 2, putative; FUNCTIONS IN: oxidoreductase activity, antioxidant activity; INVOLVED IN: defense response to bacterium, peptidyl-cysteine S-nitrosylation; LOCATED IN: thylakoid, chloroplast stroma, chloroplast, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336), Redoxin (InterPro:IPR013740); BEST Arabidopsis thaliana protein match is: TPX1 (thioredoxin-dependent peroxidase 1); antioxidant/ oxidoreductase (TAIR:AT1G65980.1); Has 3329 Blast hits to 3329 proteins in 622 species: Archae - 43; Bacteria - 1005; Metazoa - 160; Fungi - 217; Plants - 175; Viruses - 0; Other Eukaryotes - 1729 (source: NCBI BLink).  protein_id AT3G52960.1p  transcript_id AT3G52960.1  protein_id AT3G52960.1p  transcript_id AT3G52960.1  
At3g52970	chr3:019642749	0.0	C/19642749-19643259,19642105-19642517,19641400-19642026	AT3G52970.1  CDS  gene_syn CYP76G1, CYTOCHROME P450, FAMILY 76, SUBFAMILY G, POLYPEPTIDE 1  gene CYP76G1  function member of CYP76G  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP76G1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP76G1; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP76C4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT2G45550.1); Has 23115 Blast hits to 22933 proteins in 1198 species: Archae - 30; Bacteria - 1769; Metazoa - 10400; Fungi - 4431; Plants - 5705; Viruses - 3; Other Eukaryotes - 777 (source: NCBI BLink).  protein_id AT3G52970.1p  transcript_id AT3G52970.1  protein_id AT3G52970.1p  transcript_id AT3G52970.1  
At3g52980	chr3:019645660	0.0	W/19645660-19646212,19646276-19646534,19646629-19646962	AT3G52980.1  CDS  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT2G05160.1); Has 117 Blast hits to 83 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G52980.1p  transcript_id AT3G52980.1  protein_id AT3G52980.1p  transcript_id AT3G52980.1  
At3g52990	chr3:019649046	0.0	W/19649046-19649114,19649246-19649342,19649435-19649532,19649627-19649782,19649888-19649965,19650040-19650171,19650281-19650361,19650485-19650556,19650641-19650730,19650818-19650962,19651093-19651181,19651320-19651415,19651526-19651593,19651687-19651786,19651872-19651931,19652085-19652237	AT3G52990.1  CDS  go_component membrane|GO:0016020|17432890|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function magnesium ion binding|GO:0000287||IEA  go_function catalytic activity|GO:0003824||IEA  go_function pyruvate kinase activity|GO:0004743||IEA  go_function potassium ion binding|GO:0030955||IEA  go_process glycolysis|GO:0006096||ISS  go_function pyruvate kinase activity|GO:0004743||ISS  product pyruvate kinase, putative  note pyruvate kinase, putative; FUNCTIONS IN: pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity; INVOLVED IN: response to cadmium ion, glycolysis; LOCATED IN: membrane; EXPRESSED IN: guard cell, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate kinase, alpha/beta (InterPro:IPR015794), Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), Pyruvate kinase (InterPro:IPR001697), Pyruvate kinase, C-terminal-like (InterPro:IPR015795), Pyruvate kinase, barrel (InterPro:IPR015793); BEST Arabidopsis thaliana protein match is: pyruvate kinase, putative (TAIR:AT2G36580.1); Has 6549 Blast hits to 6522 proteins in 1516 species: Archae - 99; Bacteria - 3191; Metazoa - 483; Fungi - 169; Plants - 286; Viruses - 0; Other Eukaryotes - 2321 (source: NCBI BLink).  protein_id AT3G52990.1p  transcript_id AT3G52990.1  protein_id AT3G52990.1p  transcript_id AT3G52990.1  
At3g52990	chr3:019649336	0.0	W/19649336-19649342,19649435-19649532,19649627-19649782,19649888-19649965,19650040-19650171,19650281-19650361,19650485-19650556,19650641-19650730,19650818-19650962,19651093-19651181,19651320-19651415,19651526-19651593,19651687-19651786,19651872-19651931,19652085-19652237	AT3G52990.2  CDS  go_component membrane|GO:0016020|17432890|IDA  go_function magnesium ion binding|GO:0000287||IEA  go_function catalytic activity|GO:0003824||IEA  go_function pyruvate kinase activity|GO:0004743||IEA  go_function potassium ion binding|GO:0030955||IEA  go_process glycolysis|GO:0006096||ISS  go_function pyruvate kinase activity|GO:0004743||ISS  product pyruvate kinase, putative  note pyruvate kinase, putative; FUNCTIONS IN: pyruvate kinase activity, magnesium ion binding, potassium ion binding, catalytic activity; INVOLVED IN: glycolysis; LOCATED IN: membrane; EXPRESSED IN: guard cell, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate kinase, alpha/beta (InterPro:IPR015794), Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), Pyruvate kinase (InterPro:IPR001697), Pyruvate kinase, C-terminal-like (InterPro:IPR015795), Pyruvate kinase, barrel (InterPro:IPR015793); BEST Arabidopsis thaliana protein match is: pyruvate kinase, putative (TAIR:AT2G36580.1); Has 6217 Blast hits to 6201 proteins in 1514 species: Archae - 98; Bacteria - 3172; Metazoa - 469; Fungi - 169; Plants - 284; Viruses - 0; Other Eukaryotes - 2025 (source: NCBI BLink).  protein_id AT3G52990.2p  transcript_id AT3G52990.2  protein_id AT3G52990.2p  transcript_id AT3G52990.2  
At3g53000	chr3:019654278	0.0	W/19654278-19654589,19654733-19654851,19655330-19655801	AT3G53000.1  CDS  gene_syn AtPP2-A15, Phloem protein 2-A15  gene AtPP2-A15  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function carbohydrate binding|GO:0030246|12529520|ISS  product AtPP2-A15 (Phloem protein 2-A15); carbohydrate binding  note Phloem protein 2-A15 (AtPP2-A15); FUNCTIONS IN: carbohydrate binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: AtPP2-A12 (Phloem protein 2-A12); carbohydrate binding (TAIR:AT1G12710.1); Has 289 Blast hits to 286 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 289; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G53000.1p  transcript_id AT3G53000.1  protein_id AT3G53000.1p  transcript_id AT3G53000.1  
At3g53010	chr3:019657323	0.0	C/19657323-19657928,19656603-19656890	AT3G53010.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF303, acetylesterase putative (InterPro:IPR005181); BEST Arabidopsis thaliana protein match is: hydrolase (TAIR:AT4G34215.2); Has 199 Blast hits to 199 proteins in 58 species: Archae - 0; Bacteria - 119; Metazoa - 0; Fungi - 1; Plants - 56; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT3G53010.1p  transcript_id AT3G53010.1  protein_id AT3G53010.1p  transcript_id AT3G53010.1  
At3g53015	chr3:019659301	0.0	C/19659301-19659413	AT3G53015.1  miRNA  gene_syn MICRORNA771A, MIR771A  gene MIR771A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UGAGCCUCUGUGGUAGCCCUC  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR771A (MICRORNA771A); miRNA  transcript_id AT3G53015.1  
At3g53016	chr3:019659571	0.0	C/19659571-19659676	AT3G53016.1  miRNA  gene_syn MICRORNA851A, MIR851A  gene MIR851A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCUCGGUUCGCGAUCCACAAG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR851A (MICRORNA851A); miRNA  transcript_id AT3G53016.1  
At3g53020	chr3:019661902	0.0	C/19661902-19661912,19661448-19661523,19661249-19661350,19660996-19661144,19660749-19660902	AT3G53020.1  CDS  gene_syn RIBOSOMAL PROTEIN L24, RPL24, RPL24B, SHORT VALVE1, STV1  gene STV1  function RPL24B encodes ribosomal protein L24, homolog of cytosolic RPL24, found in archaea and higher eukaryotes. Arabidopsis has two RPL24 homologs, RPL24A (AT2G36620) and RPL24B. Mutants showed defects in apical-basal gynoecium patterning similar to previously described ett and mp mutants. Transformation of stv1-1 mutant with a uORF-eliminated ETT construct partially suppressed the stv1 gynoecium phenotype, implying that STV1 could influence ETT translation through its uORFs. Regulated by TCP20.  go_component nucleolus|GO:0005730|15496452|IDA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process auxin mediated signaling pathway|GO:0009734|16227452|IMP  go_process ribosome biogenesis|GO:0042254||ISS  go_process gynoecium development|GO:0048467|16227452|IMP  go_function structural constituent of ribosome|GO:0003735||ISS  product STV1 (SHORT VALVE1); structural constituent of ribosome  note SHORT VALVE1 (STV1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: auxin mediated signaling pathway, gynoecium development, translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, ribosome, nucleolus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L24e (InterPro:IPR000988); BEST Arabidopsis thaliana protein match is: RPL24A (ribosomal protein L24); structural constituent of ribosome (TAIR:AT2G36620.1); Has 956 Blast hits to 950 proteins in 248 species: Archae - 55; Bacteria - 20; Metazoa - 367; Fungi - 199; Plants - 124; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink).  protein_id AT3G53020.1p  transcript_id AT3G53020.1  protein_id AT3G53020.1p  transcript_id AT3G53020.1  
At3g53030	chr3:019662412	0.0	W/19662412-19662606,19662717-19663649,19663806-19663853,19663949-19664362	AT3G53030.1  CDS  gene_syn SRPK4, Ser/Arg-rich protein kinase 4  gene SRPK4  function Encodes a protein kinase SRPK4 that specifically targets Arabidopsis Ser/Arg-rich (SR) slicing factors involved in RNA metabolism. In vitro kinase assay showed that SRPK4 phosphorylates the SR protein RSp31.  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468|16807317|IDA  go_process response to oxidative stress|GO:0006979|18433157|IDA  go_function protein kinase activity|GO:0004672|16807317|IDA  go_function protein kinase activity|GO:0004672|18433157|IDA  go_function kinase activity|GO:0016301||ISS  product SRPK4 (Ser/Arg-rich protein kinase 4); kinase/ protein kinase  note Ser/Arg-rich protein kinase 4 (SRPK4); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: response to oxidative stress, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase-related (TAIR:AT3G44850.1); Has 29409 Blast hits to 22383 proteins in 735 species: Archae - 2; Bacteria - 723; Metazoa - 13625; Fungi - 4686; Plants - 3868; Viruses - 16; Other Eukaryotes - 6489 (source: NCBI BLink).  protein_id AT3G53030.1p  transcript_id AT3G53030.1  protein_id AT3G53030.1p  transcript_id AT3G53030.1  
At3g53040	chr3:019665419	0.0	C/19665419-19666405,19665182-19665339,19664797-19665091	AT3G53040.1  CDS  go_process embryonic development ending in seed dormancy|GO:0009793||ISS  product late embryogenesis abundant protein, putative / LEA protein, putative  note late embryogenesis abundant protein, putative / LEA protein, putative; INVOLVED IN: embryonic development ending in seed dormancy; EXPRESSED IN: seed; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein (InterPro:IPR004238); BEST Arabidopsis thaliana protein match is: ATECP63 (EMBRYONIC CELL PROTEIN 63) (TAIR:AT2G36640.1); Has 44467 Blast hits to 24949 proteins in 1800 species: Archae - 475; Bacteria - 11822; Metazoa - 13897; Fungi - 3876; Plants - 2992; Viruses - 372; Other Eukaryotes - 11033 (source: NCBI BLink).  protein_id AT3G53040.1p  transcript_id AT3G53040.1  protein_id AT3G53040.1p  transcript_id AT3G53040.1  
At3g53050	chr3:019669084	0.0	W/19669084-19669434,19669511-19669588	AT3G53050.1  CDS  go_component beta-galactosidase complex|GO:0009341||IEA  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  go_function sugar binding|GO:0005529||IEA  go_function sugar binding|GO:0005529||ISS  product galactose-binding lectin family protein  note galactose-binding lectin family protein; FUNCTIONS IN: sugar binding, beta-galactosidase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system, beta-galactosidase complex; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922); BEST Arabidopsis thaliana protein match is: galactose-binding lectin family protein (TAIR:AT3G53080.1); Has 184 Blast hits to 184 proteins in 31 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 176; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G53050.1p  transcript_id AT3G53050.1  protein_id AT3G53050.1p  transcript_id AT3G53050.1  
At3g53060	chr3:019670166	0.0	W/19670166-19670423	AT3G53060.1  CDS  gene_syn ARABIDOPSIS SKP1-LIKE 6, ASK6  gene ASK6  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function protein binding|GO:0005515||IEA  go_component SCF ubiquitin ligase complex|GO:0019005|12970487|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product ASK6 (ARABIDOPSIS SKP1-LIKE 6); protein binding / ubiquitin-protein ligase  note ARABIDOPSIS SKP1-LIKE 6 (ASK6); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: SCF ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: ASK5 (ARABIDOPSIS SKP1-LIKE 5); protein binding / ubiquitin-protein ligase (TAIR:AT3G60020.1); Has 901 Blast hits to 901 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 392; Fungi - 105; Plants - 308; Viruses - 9; Other Eukaryotes - 87 (source: NCBI BLink).  protein_id AT3G53060.1p  transcript_id AT3G53060.1  protein_id AT3G53060.1p  transcript_id AT3G53060.1  
At3g53065	chr3:019672873	0.0	W/19672873-19673247,19673326-19673400,19673463-19673471	AT3G53065.1  CDS  go_component beta-galactosidase complex|GO:0009341||IEA  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  go_function sugar binding|GO:0005529||IEA  product beta-galactosidase/ sugar binding  note beta-galactosidase/ sugar binding; FUNCTIONS IN: sugar binding, beta-galactosidase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system, beta-galactosidase complex; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922); BEST Arabidopsis thaliana protein match is: beta-galactosidase/ sugar binding (TAIR:AT3G53075.1); Has 180 Blast hits to 180 proteins in 27 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G53065.1p  transcript_id AT3G53065.1  protein_id AT3G53065.1p  transcript_id AT3G53065.1  
At3g53070	chr3:019674533	0.0	W/19674533-19674622,19674715-19674942	AT3G53070.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  product beta-galactosidase-related  note beta-galactosidase-related; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: galactose-binding lectin family protein (TAIR:AT3G53080.1); Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G53070.1p  transcript_id AT3G53070.1  protein_id AT3G53070.1p  transcript_id AT3G53070.1  
At3g53075	chr3:019676524	0.0	W/19676524-19676907,19676991-19677104	AT3G53075.1  CDS  go_component beta-galactosidase complex|GO:0009341||IEA  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  go_function sugar binding|GO:0005529||IEA  product beta-galactosidase/ sugar binding  note beta-galactosidase/ sugar binding; FUNCTIONS IN: sugar binding, beta-galactosidase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system, beta-galactosidase complex; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922); BEST Arabidopsis thaliana protein match is: galactose-binding lectin family protein (TAIR:AT3G53080.1); Has 206 Blast hits to 206 proteins in 31 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 194; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT3G53075.1p  transcript_id AT3G53075.1  protein_id AT3G53075.1p  transcript_id AT3G53075.1  
At3g53080	chr3:019678013	0.0	W/19678013-19678366,19678465-19678578	AT3G53080.1  CDS  go_component beta-galactosidase complex|GO:0009341||IEA  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process lactose catabolic process|GO:0005990||IEA  go_process lactose catabolic process, using glucoside 3-dehydrogenase|GO:0019513||IEA  go_process lactose catabolic process via UDP-galactose|GO:0019515||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  go_function sugar binding|GO:0005529||IEA  go_function sugar binding|GO:0005529||ISS  product galactose-binding lectin family protein  note galactose-binding lectin family protein; FUNCTIONS IN: sugar binding, beta-galactosidase activity; INVOLVED IN: lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process; LOCATED IN: endomembrane system, beta-galactosidase complex; EXPRESSED IN: leaf whorl, petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922); BEST Arabidopsis thaliana protein match is: beta-galactosidase/ sugar binding (TAIR:AT3G53075.1); Has 231 Blast hits to 231 proteins in 32 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 0; Plants - 208; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT3G53080.1p  transcript_id AT3G53080.1  protein_id AT3G53080.1p  transcript_id AT3G53080.1  
At3g53090	chr3:019679273	0.0	W/19679273-19679296,19679744-19679866,19679997-19680237,19680326-19680888,19681063-19682022,19682100-19682422,19682538-19682816,19682929-19683181,19683291-19683461,19683577-19683669,19683748-19683855,19683980-19684096,19684189-19684278,19684370-19684453	AT3G53090.1  CDS  gene_syn UPL7  gene UPL7  function encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.  go_component ubiquitin ligase complex|GO:0000151|12969426|ISS  go_component intracellular|GO:0005622||ISS  go_process protein modification process|GO:0006464||ISS  go_process protein ubiquitination|GO:0016567|12969426|ISS  go_function ubiquitin-protein ligase activity|GO:0004842|12969426|ISS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UPL7; ubiquitin-protein ligase  note UPL7; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein modification process, protein ubiquitination; LOCATED IN: ubiquitin ligase complex, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HECT (InterPro:IPR000569), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: UPL6 (UBIQUITIN PROTEIN LIGASE 6); ubiquitin-protein ligase (TAIR:AT3G17205.2); Has 3419 Blast hits to 3299 proteins in 174 species: Archae - 0; Bacteria - 0; Metazoa - 2201; Fungi - 498; Plants - 164; Viruses - 0; Other Eukaryotes - 556 (source: NCBI BLink).  protein_id AT3G53090.1p  transcript_id AT3G53090.1  protein_id AT3G53090.1p  transcript_id AT3G53090.1  
At3g53090	chr3:019679273	0.0	W/19679273-19679296,19679744-19679866,19679997-19680237,19680326-19680888,19681063-19682022,19682100-19682422,19682538-19682816,19682929-19683181,19683291-19683461,19683577-19683669,19683748-19683855,19683980-19684096,19684189-19684278,19684370-19684453	AT3G53090.2  CDS  gene_syn UPL7  gene UPL7  function encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.  go_component ubiquitin ligase complex|GO:0000151|12969426|ISS  go_component intracellular|GO:0005622||ISS  go_process protein modification process|GO:0006464||ISS  go_process protein ubiquitination|GO:0016567|12969426|ISS  go_function ubiquitin-protein ligase activity|GO:0004842|12969426|ISS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UPL7; ubiquitin-protein ligase  note UPL7; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein modification process, protein ubiquitination; LOCATED IN: ubiquitin ligase complex, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HECT (InterPro:IPR000569), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: UPL6 (UBIQUITIN PROTEIN LIGASE 6); ubiquitin-protein ligase (TAIR:AT3G17205.2); Has 3419 Blast hits to 3299 proteins in 174 species: Archae - 0; Bacteria - 0; Metazoa - 2201; Fungi - 498; Plants - 164; Viruses - 0; Other Eukaryotes - 556 (source: NCBI BLink).  protein_id AT3G53090.2p  transcript_id AT3G53090.2  protein_id AT3G53090.2p  transcript_id AT3G53090.2  
At3g53100	chr3:019686302	0.0	C/19686302-19686542,19686056-19686186,19685742-19685975,19685335-19685590,19684989-19685182	AT3G53100.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: carboxylesterase/ hydrolase, acting on ester bonds / lipase (TAIR:AT5G03810.1); Has 1819 Blast hits to 1803 proteins in 179 species: Archae - 0; Bacteria - 253; Metazoa - 1; Fungi - 17; Plants - 1530; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT3G53100.1p  transcript_id AT3G53100.1  protein_id AT3G53100.1p  transcript_id AT3G53100.1  
At3g53110	chr3:019687968	0.0	W/19687968-19688204,19688309-19688602,19688681-19688908,19689036-19689101,19689495-19689893,19689991-19690099,19690183-19690271,19690355-19690423	AT3G53110.1  CDS  gene_syn LOS4, LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4  gene LOS4  function Encodes a putative DEAD-Box RNA Helicase and has RNA-dependent ATPase activity. Mutant is Sensitive to chilling stress and heat stress. Germination of the mutant is inhibited by ABA. LOS4 may be involved in temperature sensing. Is enriched in the nuclear envelope and also located in the cytoplasm. LOS4 is involved in export of poly A RNA.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component nuclear envelope|GO:0005635|15598798|IDA  go_component cytoplasm|GO:0005737|15598798|IDA  go_process response to heat|GO:0009408|15598798|IMP  go_process response to cold|GO:0009409|12165572|IMP  go_process response to cold|GO:0009409|15598798|IMP  go_process response to abscisic acid stimulus|GO:0009737|15598798|IMP  go_process poly(A)+ mRNA export from nucleus|GO:0016973|15598798|IDA  go_function RNA helicase activity|GO:0003724|12165572|ISS  go_function ATP-dependent helicase activity|GO:0008026||ISS  go_function RNA-dependent ATPase activity|GO:0008186|15598798|IDA  product LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4); ATP-dependent helicase/ RNA helicase/ RNA-dependent ATPase  note LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4 (LOS4); FUNCTIONS IN: RNA helicase activity, RNA-dependent ATPase activity, ATP-dependent helicase activity; INVOLVED IN: poly(A)+ mRNA export from nucleus, response to cold, response to heat, response to abscisic acid stimulus; LOCATED IN: nuclear envelope, plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative (TAIR:AT3G19760.1); Has 26871 Blast hits to 26664 proteins in 1729 species: Archae - 416; Bacteria - 11269; Metazoa - 4775; Fungi - 3045; Plants - 1323; Viruses - 19; Other Eukaryotes - 6024 (source: NCBI BLink).  protein_id AT3G53110.1p  transcript_id AT3G53110.1  protein_id AT3G53110.1p  transcript_id AT3G53110.1  
At3g53120	chr3:019692477	0.0	C/19692477-19692490,19691968-19692150,19691786-19691873,19691316-19691355,19691182-19691228,19690970-19691090,19690729-19690889	AT3G53120.1  CDS  gene_syn VPS37-1  gene VPS37-1  go_component ESCRT I complex|GO:0000813|17090720|ISS  product VPS37-1  note VPS37-1; LOCATED IN: ESCRT I complex; CONTAINS InterPro DOMAIN/s: Modifier of rudimentary, Modr (InterPro:IPR009851); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36680.1); Has 356 Blast hits to 356 proteins in 75 species: Archae - 0; Bacteria - 4; Metazoa - 251; Fungi - 14; Plants - 42; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT3G53120.1p  transcript_id AT3G53120.1  protein_id AT3G53120.1p  transcript_id AT3G53120.1  
At3g53130	chr3:019692812	0.0	W/19692812-19693309,19693459-19693755,19693845-19694042,19694132-19694233,19694332-19694472,19694542-19694649,19694811-19694893,19694991-19695153,19695249-19695278	AT3G53130.1  CDS  gene_syn CYP97C1, CYTOCHROME P450 97C1, LUT1, LUTEIN DEFICIENT 1  gene LUT1  function Lutein-deficient 1 (LUT1) required for lutein biosynthesis, member of the xanthophyll class of carotenoids. Involved in epsilon ring hydroxylation. Maps at 67.3 cM on chromosome 3.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast|GO:0009507|8837513|TAS  go_process carotenoid biosynthetic process|GO:0016117|8837513|IMP  go_function epsilon hydroxylase activity|GO:0009974|8837513|IMP  go_function oxygen binding|GO:0019825||ISS  product LUT1 (LUTEIN DEFICIENT 1); epsilon hydroxylase/ oxygen binding  note LUTEIN DEFICIENT 1 (LUT1); FUNCTIONS IN: epsilon hydroxylase activity, oxygen binding; INVOLVED IN: carotenoid biosynthetic process; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3); carotene beta-ring hydroxylase/ oxygen binding (TAIR:AT1G31800.1); Has 22205 Blast hits to 22133 proteins in 1165 species: Archae - 35; Bacteria - 2022; Metazoa - 10095; Fungi - 4022; Plants - 5085; Viruses - 3; Other Eukaryotes - 943 (source: NCBI BLink).  protein_id AT3G53130.1p  transcript_id AT3G53130.1  protein_id AT3G53130.1p  transcript_id AT3G53130.1  
At3g53140	chr3:019695692	0.0	W/19695692-19696069,19696179-19696515,19696624-19696688,19697056-19697355	AT3G53140.1  CDS  go_function methyltransferase activity|GO:0008168||IEA  go_function O-methyltransferase activity|GO:0008171||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_process biological_process|GO:0008150||ND  product O-diphenol-O-methyl transferase, putative  note O-diphenol-O-methyl transferase, putative; FUNCTIONS IN: methyltransferase activity, protein dimerization activity, O-methyltransferase activity; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: ATOMT1 (O-METHYLTRANSFERASE 1); caffeate O-methyltransferase/ myricetin 3 -O-methyltransferase/ quercetin 3-O-methyltransferase (TAIR:AT5G54160.1); Has 1925 Blast hits to 1921 proteins in 388 species: Archae - 0; Bacteria - 516; Metazoa - 73; Fungi - 340; Plants - 919; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT3G53140.1p  transcript_id AT3G53140.1  protein_id AT3G53140.1p  transcript_id AT3G53140.1  
At3g53150	chr3:019697736	0.0	C/19697736-19699259	AT3G53150.1  CDS  gene_syn UDP-glucosyl transferase 73D1, UGT73D1  gene UGT73D1  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function transferase activity, transferring hexosyl groups|GO:0016758||IEA  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  product UGT73D1 (UDP-glucosyl transferase 73D1); UDP-glycosyltransferase/ transferase, transferring hexosyl groups  note UDP-glucosyl transferase 73D1 (UGT73D1); FUNCTIONS IN: transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: stem, sepal, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: DOGT1 (DON-GLUCOSYLTRANSFERASE 1); UDP-glycosyltransferase/ cis-zeatin O-beta-D-glucosyltransferase/ glucosyltransferase/ quercetin 4 -O-glucosyltransferase/ quercetin 7-O-glucosyltransferase/ trans-zeatin O-beta-D-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT2G36800.1); Has 4611 Blast hits to 4577 proteins in 274 species: Archae - 0; Bacteria - 65; Metazoa - 1780; Fungi - 7; Plants - 2697; Viruses - 36; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT3G53150.1p  transcript_id AT3G53150.1  protein_id AT3G53150.1p  transcript_id AT3G53150.1  
At3g53160	chr3:019702485	0.0	C/19702485-19703957	AT3G53160.1  CDS  gene_syn UDP-glucosyl transferase 73C7, UGT73C7  gene UGT73C7  go_component cellular_component|GO:0005575||ND  go_process response to other organism|GO:0051707|16306146|IEP  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UGT73C7 (UDP-glucosyl transferase 73C7); UDP-glycosyltransferase/ transferase, transferring glycosyl groups  note UDP-glucosyl transferase 73C7 (UGT73C7); FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: response to other organism; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, stem, leaf whorl, embryo, stamen; EXPRESSED DURING: 4 anthesis, D bilateral stage; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT2G36770.1); Has 4229 Blast hits to 4192 proteins in 279 species: Archae - 0; Bacteria - 150; Metazoa - 1372; Fungi - 7; Plants - 2647; Viruses - 31; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT3G53160.1p  transcript_id AT3G53160.1  protein_id AT3G53160.1p  transcript_id AT3G53160.1  
At3g53170	chr3:019706341	0.0	C/19706341-19706417,19705922-19706231,19704729-19705835	AT3G53170.1  CDS  go_component nucleolus|GO:0005730|15496452|IDA  go_process glutamine biosynthetic process|GO:0006542||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: glutamine biosynthetic process; LOCATED IN: nucleolus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G48730.1); Has 17188 Blast hits to 5538 proteins in 167 species: Archae - 1; Bacteria - 16; Metazoa - 307; Fungi - 211; Plants - 16025; Viruses - 0; Other Eukaryotes - 628 (source: NCBI BLink).  protein_id AT3G53170.1p  transcript_id AT3G53170.1  protein_id AT3G53170.1p  transcript_id AT3G53170.1  
At3g53180	chr3:019707068	0.0	W/19707068-19707229,19707434-19707783,19707872-19707987,19708065-19708170,19708313-19708469,19708542-19708637,19708704-19708752,19708882-19709153,19709269-19709441,19709527-19709647,19709731-19709783,19709876-19710005,19710083-19710228,19710299-19710487,19710564-19710796,19710880-19711022,19711126-19711188	AT3G53180.1  CDS  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process glutamine biosynthetic process|GO:0006542||IEA  go_process nitrogen compound metabolic process|GO:0006807||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function glutamate-ammonia ligase activity|GO:0004356||IEA  go_process nitrogen fixation|GO:0009399||ISS  go_function glutamate-ammonia ligase activity|GO:0004356||ISS  product catalytic/ glutamate-ammonia ligase  note catalytic/ glutamate-ammonia ligase; FUNCTIONS IN: glutamate-ammonia ligase activity, catalytic activity; INVOLVED IN: nitrogen compound metabolic process, N-terminal protein myristoylation, nitrogen fixation, metabolic process, glutamine biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine synthetase, catalytic region (InterPro:IPR008146), Glutamine synthetase, beta-Grasp (InterPro:IPR008147), Glutamine synthetase/guanido kinase, catalytic region (InterPro:IPR014746), Amidohydrolase 2 (InterPro:IPR006992); Has 10584 Blast hits to 10580 proteins in 1411 species: Archae - 190; Bacteria - 5115; Metazoa - 86; Fungi - 146; Plants - 34; Viruses - 0; Other Eukaryotes - 5013 (source: NCBI BLink).  protein_id AT3G53180.1p  transcript_id AT3G53180.1  protein_id AT3G53180.1p  transcript_id AT3G53180.1  
At3g53190	chr3:019714171	0.0	W/19714171-19714310,19714516-19714770,19715542-19715750,19716126-19716376,19716469-19716660,19716850-19717058,19717342-19717537	AT3G53190.1  CDS  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function lyase activity|GO:0016829||ISS  go_function pectate lyase activity|GO:0030570||ISS  product pectate lyase family protein  note pectate lyase family protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectate lyase family protein (TAIR:AT5G04310.1); Has 972 Blast hits to 967 proteins in 165 species: Archae - 0; Bacteria - 422; Metazoa - 0; Fungi - 142; Plants - 397; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT3G53190.1p  transcript_id AT3G53190.1  protein_id AT3G53190.1p  transcript_id AT3G53190.1  
At3g53200	chr3:019719271	0.0	C/19719271-19719394,19719053-19719182,19718868-19718968,19718426-19718787	AT3G53200.1  CDS  gene_syn AtMYB27, myb domain protein 27  gene AtMYB27  function Member of the R2R3 factor gene family.  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to chitin|GO:0010200|17722694|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product AtMYB27 (myb domain protein 27); DNA binding / transcription factor  note myb domain protein 27 (AtMYB27); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to chitin, regulation of transcription, DNA-dependent; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB111 (MYB DOMAIN PROTEIN 111); DNA binding / transcription factor (TAIR:AT3G46130.1); Has 6352 Blast hits to 5796 proteins in 357 species: Archae - 0; Bacteria - 0; Metazoa - 694; Fungi - 284; Plants - 3763; Viruses - 5; Other Eukaryotes - 1606 (source: NCBI BLink).  protein_id AT3G53200.1p  transcript_id AT3G53200.1  protein_id AT3G53200.1p  transcript_id AT3G53200.1  
At3g53210	chr3:019720182	0.0	W/19720182-19720366,19720450-19720512,19720592-19720708,19720845-19721247,19721329-19721480,19721575-19721764	AT3G53210.1  CDS  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  product nodulin MtN21 family protein  note nodulin MtN21 family protein; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT1G75500.1); Has 2469 Blast hits to 2459 proteins in 336 species: Archae - 6; Bacteria - 855; Metazoa - 4; Fungi - 0; Plants - 649; Viruses - 0; Other Eukaryotes - 955 (source: NCBI BLink).  protein_id AT3G53210.1p  transcript_id AT3G53210.1  protein_id AT3G53210.1p  transcript_id AT3G53210.1  
At3g53220	chr3:019722032	0.0	W/19722032-19722166,19722272-19722297,19722396-19722615	AT3G53220.1  CDS  go_process cell redox homeostasis|GO:0045454||IEA  go_component cellular_component|GO:0005575||ND  product thioredoxin family protein  note thioredoxin family protein; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATTRX2 (THIOREDOXIN 2); oxidoreductase, acting on sulfur group of donors, disulfide as acceptor (TAIR:AT5G39950.1); Has 5551 Blast hits to 5551 proteins in 1246 species: Archae - 50; Bacteria - 2270; Metazoa - 620; Fungi - 298; Plants - 607; Viruses - 0; Other Eukaryotes - 1706 (source: NCBI BLink).  protein_id AT3G53220.1p  transcript_id AT3G53220.1  protein_id AT3G53220.1p  transcript_id AT3G53220.1  
At3g53230	chr3:019723416	0.0	W/19723416-19723444,19723542-19723707,19723936-19724164,19724285-19725051,19725139-19725714,19725809-19726489	AT3G53230.1  CDS  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function nucleotide binding|GO:0000166||IEA  go_function binding|GO:0005488||IEA  go_function ATP binding|GO:0005524||IEA  go_function hydrolase activity|GO:0016787||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_function ATP binding|GO:0005524||ISS  product cell division cycle protein 48, putative / CDC48, putative  note cell division cycle protein 48, putative / CDC48, putative; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle protein 48, putative / CDC48, putative (TAIR:AT5G03340.1); Has 44293 Blast hits to 25363 proteins in 1885 species: Archae - 996; Bacteria - 15540; Metazoa - 7206; Fungi - 4097; Plants - 3052; Viruses - 60; Other Eukaryotes - 13342 (source: NCBI BLink).  protein_id AT3G53230.1p  transcript_id AT3G53230.1  protein_id AT3G53230.1p  transcript_id AT3G53230.1  
At3g53232	chr3:019731137	0.0	C/19731137-19731310	AT3G53232.1  CDS  gene_syn DEVIL 20, DVL20, ROTUNDIFOLIA LIKE 1, RTFL1  gene RTFL1  go_component cellular_component|GO:0005575||ND  go_process shoot development|GO:0048367|14871303|ISS  go_function molecular_function|GO:0003674||ND  product RTFL1 (ROTUNDIFOLIA LIKE 1)  note ROTUNDIFOLIA LIKE 1 (RTFL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: shoot development; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); BEST Arabidopsis thaliana protein match is: ROT4 (ROTUNDIFOLIA4) (TAIR:AT2G36985.1); Has 31 Blast hits to 31 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G53232.1p  transcript_id AT3G53232.1  protein_id AT3G53232.1p  transcript_id AT3G53232.1  
At3g53235	chr3:019734491	0.0	C/19734491-19734695,19734350-19734383,19733838-19733943	AT3G53235.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G53235.1p  transcript_id AT3G53235.1  protein_id AT3G53235.1p  transcript_id AT3G53235.1  
At3g53240	chr3:019735927	0.0	W/19735927-19736137,19736214-19736369,19736462-19736536,19736719-19736793,19736889-19739047	AT3G53240.1  CDS  gene_syn AtRLP45, Receptor Like Protein 45  gene AtRLP45  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|TAS  go_function protein binding|GO:0005515||ISS  product AtRLP45 (Receptor Like Protein 45); protein binding  note Receptor Like Protein 45 (AtRLP45); FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP15 (Receptor Like Protein 15); protein binding (TAIR:AT1G74190.1); Has 71649 Blast hits to 18371 proteins in 761 species: Archae - 46; Bacteria - 3975; Metazoa - 20446; Fungi - 812; Plants - 40945; Viruses - 12; Other Eukaryotes - 5413 (source: NCBI BLink).  protein_id AT3G53240.1p  transcript_id AT3G53240.1  protein_id AT3G53240.1p  transcript_id AT3G53240.1  
At3g53250	chr3:019742968	0.0	W/19742968-19743297	AT3G53250.1  CDS  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT2G37030.1); Has 448 Blast hits to 446 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 447; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G53250.1p  transcript_id AT3G53250.1  protein_id AT3G53250.1p  transcript_id AT3G53250.1  
At3g53260	chr3:019746216	0.0	C/19746216-19746619,19744256-19746005	AT3G53260.1  CDS  gene_syn PAL2, PHENYLALANINE AMMONIA-LYASE 2  gene PAL2  function Encodes phenylalanine lyase.  go_component cytoplasm|GO:0005737||IEA  go_process defense response|GO:0006952|7888622|TAS  go_process response to oxidative stress|GO:0006979|15634198|IEP  go_process response to wounding|GO:0009611|7888622|TAS  go_process phenylpropanoid biosynthetic process|GO:0009699|7888622|TAS  go_function phenylalanine ammonia-lyase activity|GO:0045548|7888622|ISS  go_function phenylalanine ammonia-lyase activity|GO:0045548|7888622|TAS  product PAL2; phenylalanine ammonia-lyase  note PAL2; FUNCTIONS IN: phenylalanine ammonia-lyase activity; INVOLVED IN: response to oxidative stress, phenylpropanoid biosynthetic process, response to wounding, defense response; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phenylalanine/histidine ammonia-lyase (InterPro:IPR001106), L-Aspartase-like (InterPro:IPR008948), Phenylalanine ammonia-lyase (InterPro:IPR005922); BEST Arabidopsis thaliana protein match is: pal1 (Phe ammonia lyase 1); phenylalanine ammonia-lyase (TAIR:AT2G37040.1); Has 3115 Blast hits to 3110 proteins in 832 species: Archae - 21; Bacteria - 1672; Metazoa - 68; Fungi - 91; Plants - 781; Viruses - 0; Other Eukaryotes - 482 (source: NCBI BLink).  protein_id AT3G53260.1p  transcript_id AT3G53260.1  protein_id AT3G53260.1p  transcript_id AT3G53260.1  
At3g53270	chr3:019752112	0.0	C/19752112-19752168,19751868-19751994,19751650-19751763,19751221-19751413,19751088-19751133,19750844-19750919,19750406-19750635	AT3G53270.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 65 Blast hits to 65 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 39; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G53270.1p  transcript_id AT3G53270.1  protein_id AT3G53270.1p  transcript_id AT3G53270.1  
At3g53270	chr3:019752112	0.0	C/19752112-19752168,19751868-19751994,19751650-19751763,19751221-19751413,19751088-19751133,19750844-19750919,19750406-19750635	AT3G53270.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 65 Blast hits to 65 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 39; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G53270.2p  transcript_id AT3G53270.2  protein_id AT3G53270.2p  transcript_id AT3G53270.2  
At3g53270	chr3:019752112	0.0	C/19752112-19752168,19751868-19751994,19751650-19751763,19751221-19751413,19751088-19751133,19750844-19750919,19750406-19750635	AT3G53270.3  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 65 Blast hits to 65 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 39; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G53270.3p  transcript_id AT3G53270.3  protein_id AT3G53270.3p  transcript_id AT3G53270.3  
At3g53270	chr3:019752112	0.0	C/19752112-19752168,19751868-19751994,19751650-19751763,19751221-19751413,19751088-19751133,19750844-19750919,19750406-19750635	AT3G53270.4  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 65 Blast hits to 65 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 39; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G53270.4p  transcript_id AT3G53270.4  protein_id AT3G53270.4p  transcript_id AT3G53270.4  
At3g53270	chr3:019752112	0.0	C/19752112-19752168,19751868-19751994,19751650-19751763,19751221-19751413,19751088-19751133,19750844-19750919,19750406-19750635	AT3G53270.5  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 65 Blast hits to 65 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 39; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G53270.5p  transcript_id AT3G53270.5  protein_id AT3G53270.5p  transcript_id AT3G53270.5  
At3g53280	chr3:019755749	0.0	W/19755749-19756630,19756852-19757466	AT3G53280.1  CDS  gene_syn CYP71B5, CYTOCHROME P450 71B5  gene CYP71B5  function cytochrome P450 monooxygenase  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71B5 (CYTOCHROME P450 71B5); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYTOCHROME P450 71B5 (CYP71B5); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP71B38; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G44250.1); Has 23505 Blast hits to 23343 proteins in 1252 species: Archae - 21; Bacteria - 1956; Metazoa - 10410; Fungi - 4367; Plants - 5884; Viruses - 3; Other Eukaryotes - 864 (source: NCBI BLink).  protein_id AT3G53280.1p  transcript_id AT3G53280.1  protein_id AT3G53280.1p  transcript_id AT3G53280.1  
At3g53290	chr3:019758157	0.0	W/19758157-19758867,19759091-19759603	AT3G53290.1  CDS  gene_syn CYP71B30P, CYTOCHROME P450, FAMILY 71, SUBFAMILY B, POLYPEPTIDE 30 PSEUDOGENE  gene CYP71B30P  function missing N-term 80 AA not found between end of 71B5 and start of this sequence probably a pseudogene, from http://drnelson.utmem.edu/biblioD.html  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function oxygen binding|GO:0019825||ISS  product CYP71B30P; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71B30P; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP71B8; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT5G35715.1); Has 21426 Blast hits to 21373 proteins in 1139 species: Archae - 23; Bacteria - 1765; Metazoa - 9782; Fungi - 3528; Plants - 5504; Viruses - 3; Other Eukaryotes - 821 (source: NCBI BLink).  protein_id AT3G53290.1p  transcript_id AT3G53290.1  protein_id AT3G53290.1p  transcript_id AT3G53290.1  
At3g53294	chr3:019759983	0.0	C/19759983-19760108	AT3G53294.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G53294.1p  transcript_id AT3G53294.1  protein_id AT3G53294.1p  transcript_id AT3G53294.1  
At3g53300	chr3:019760525	0.0	W/19760525-19761412,19761626-19762234	AT3G53300.1  CDS  gene_syn CYP71B31, CYTOCHROME P450, FAMILY 71, SUBFAMILY B, POLYPEPTIDE 31, F4P12.1  gene CYP71B31  function putative cytochrome P450  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71B31; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71B31; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; EXPRESSED IN: male gametophyte, sepal, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP71B8; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT5G35715.1); Has 23780 Blast hits to 23602 proteins in 1264 species: Archae - 21; Bacteria - 1977; Metazoa - 10527; Fungi - 4491; Plants - 5827; Viruses - 3; Other Eukaryotes - 934 (source: NCBI BLink).  protein_id AT3G53300.1p  transcript_id AT3G53300.1  protein_id AT3G53300.1p  transcript_id AT3G53300.1  
At3g53305	chr3:019763618	0.0	W/19763618-19764125,19764513-19764554,19764661-19765100,19765242-19765268	AT3G53305.1  CDS  gene_syn CYP71B32, CYTOCHROME P450, FAMILY 71, SUBFAMILY B, POLYPEPTIDE 32  gene CYP71B32  function putative cytochrome P450  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71B32; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71B32; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group IV (InterPro:IPR002403), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP71B8; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT5G35715.1); Has 19136 Blast hits to 16931 proteins in 977 species: Archae - 16; Bacteria - 1175; Metazoa - 8393; Fungi - 2056; Plants - 6922; Viruses - 3; Other Eukaryotes - 571 (source: NCBI BLink).  protein_id AT3G53305.1p  transcript_id AT3G53305.1  protein_id AT3G53305.1p  transcript_id AT3G53305.1  
At3g53310	chr3:019768297	0.0	C/19768297-19768368,19767443-19767896,19767280-19767359,19766927-19767181	AT3G53310.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcriptional factor B3 family protein  note transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT3G06160.1); Has 6006 Blast hits to 2515 proteins in 234 species: Archae - 0; Bacteria - 1572; Metazoa - 1744; Fungi - 641; Plants - 439; Viruses - 134; Other Eukaryotes - 1476 (source: NCBI BLink).  protein_id AT3G53310.1p  transcript_id AT3G53310.1  protein_id AT3G53310.1p  transcript_id AT3G53310.1  
At3g53320	chr3:019772176	0.0	C/19772176-19772278,19771764-19771982,19771420-19771686,19770999-19771036,19770840-19770905,19770447-19770594,19769734-19770365,19769397-19769585	AT3G53320.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37070.1); Has 10077 Blast hits to 5050 proteins in 411 species: Archae - 0; Bacteria - 1106; Metazoa - 4046; Fungi - 1512; Plants - 226; Viruses - 108; Other Eukaryotes - 3079 (source: NCBI BLink).  protein_id AT3G53320.1p  transcript_id AT3G53320.1  protein_id AT3G53320.1p  transcript_id AT3G53320.1  
At3g53330	chr3:019772930	0.0	W/19772930-19773199,19773276-19773938	AT3G53330.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function copper ion binding|GO:0005507||ISS  product plastocyanin-like domain-containing protein  note plastocyanin-like domain-containing protein; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: copper ion binding / electron carrier (TAIR:AT1G45063.2); Has 19425 Blast hits to 8514 proteins in 655 species: Archae - 52; Bacteria - 2434; Metazoa - 4879; Fungi - 1958; Plants - 6741; Viruses - 1107; Other Eukaryotes - 2254 (source: NCBI BLink).  protein_id AT3G53330.1p  transcript_id AT3G53330.1  protein_id AT3G53330.1p  transcript_id AT3G53330.1  
At3g53340	chr3:019775768	0.0	C/19775768-19775991,19775477-19775606,19775363-19775368,19775152-19775226,19774999-19775055,19774667-19774705	AT3G53340.1  CDS  gene_syn NF-YB10, NUCLEAR FACTOR Y, SUBUNIT B10  gene NF-YB10  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YB10 (NUCLEAR FACTOR Y, SUBUNIT B10); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT B10 (NF-YB10); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: NF-YB8 (NUCLEAR FACTOR Y, SUBUNIT B8); transcription factor (TAIR:AT2G37060.3); Has 978 Blast hits to 978 proteins in 180 species: Archae - 0; Bacteria - 0; Metazoa - 379; Fungi - 221; Plants - 296; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT3G53340.1p  transcript_id AT3G53340.1  protein_id AT3G53340.1p  transcript_id AT3G53340.1  
At3g53342	chr3:019777135	0.0	W/19777135-19777353	AT3G53342.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G18692.1); Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G53342.1p  transcript_id AT3G53342.1  protein_id AT3G53342.1p  transcript_id AT3G53342.1  
At3g53350	chr3:019781536	0.0	C/19781536-19781555,19781273-19781444,19780190-19781182	AT3G53350.2  CDS  go_process biological_process|GO:0008150||ND  product myosin heavy chain-related  note myosin heavy chain-related; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT2G37080.1); Has 98208 Blast hits to 51032 proteins in 1967 species: Archae - 929; Bacteria - 11096; Metazoa - 50397; Fungi - 7513; Plants - 3609; Viruses - 432; Other Eukaryotes - 24232 (source: NCBI BLink).  protein_id AT3G53350.2p  transcript_id AT3G53350.2  protein_id AT3G53350.2p  transcript_id AT3G53350.2  
At3g53350	chr3:019781536	0.0	C/19781536-19781555,19781273-19781444,19780190-19781182	AT3G53350.3  CDS  go_process biological_process|GO:0008150||ND  product myosin heavy chain-related  note myosin heavy chain-related; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT2G37080.1); Has 98208 Blast hits to 51032 proteins in 1967 species: Archae - 929; Bacteria - 11096; Metazoa - 50397; Fungi - 7513; Plants - 3609; Viruses - 432; Other Eukaryotes - 24232 (source: NCBI BLink).  protein_id AT3G53350.3p  transcript_id AT3G53350.3  protein_id AT3G53350.3p  transcript_id AT3G53350.3  
At3g53350	chr3:019781536	0.0	C/19781536-19781555,19781273-19781444,19780190-19781188	AT3G53350.1  CDS  go_component nucleus|GO:0005634|14617066|IDA  go_process biological_process|GO:0008150||ND  product myosin heavy chain-related  note myosin heavy chain-related; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT2G37080.1); Has 100058 Blast hits to 52021 proteins in 1985 species: Archae - 1000; Bacteria - 11469; Metazoa - 51124; Fungi - 7714; Plants - 3675; Viruses - 450; Other Eukaryotes - 24626 (source: NCBI BLink).  protein_id AT3G53350.1p  transcript_id AT3G53350.1  protein_id AT3G53350.1p  transcript_id AT3G53350.1  
At3g53360	chr3:019784502	0.0	W/19784502-19786808	AT3G53360.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G03580.1); Has 18265 Blast hits to 5217 proteins in 170 species: Archae - 0; Bacteria - 6; Metazoa - 170; Fungi - 45; Plants - 17630; Viruses - 0; Other Eukaryotes - 414 (source: NCBI BLink).  protein_id AT3G53360.1p  transcript_id AT3G53360.1  protein_id AT3G53360.1p  transcript_id AT3G53360.1  
At3g53365	chr3:019787255	0.0	W/19787255-19787702	AT3G53365.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G53365.1  
At3g53370	chr3:019788711	0.0	C/19788711-19788737,19788159-19788362	AT3G53370.1  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product DNA-binding S1FA family protein  note DNA-binding S1FA family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA binding protein S1FA (InterPro:IPR006779); Has 54 Blast hits to 54 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G53370.1p  transcript_id AT3G53370.1  protein_id AT3G53370.1p  transcript_id AT3G53370.1  
At3g53380	chr3:019789204	0.0	C/19789204-19791351	AT3G53380.1  CDS  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product lectin protein kinase family protein  note lectin protein kinase family protein; FUNCTIONS IN: carbohydrate binding, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin protein kinase family protein (TAIR:AT5G03140.1); Has 89055 Blast hits to 87935 proteins in 3185 species: Archae - 51; Bacteria - 7859; Metazoa - 38715; Fungi - 7038; Plants - 19887; Viruses - 400; Other Eukaryotes - 15105 (source: NCBI BLink).  protein_id AT3G53380.1p  transcript_id AT3G53380.1  protein_id AT3G53380.1p  transcript_id AT3G53380.1  
At3g53390	chr3:019792781	0.0	W/19792781-19792963,19793174-19793491,19793595-19793703,19793792-19793885,19794335-19794422,19794517-19794600,19794788-19794884,19794970-19795057,19795197-19795302,19795382-19795474,19796012-19796428	AT3G53390.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT2G37160.2); Has 10454 Blast hits to 6014 proteins in 361 species: Archae - 24; Bacteria - 2782; Metazoa - 3495; Fungi - 1897; Plants - 786; Viruses - 0; Other Eukaryotes - 1470 (source: NCBI BLink).  protein_id AT3G53390.1p  transcript_id AT3G53390.1  protein_id AT3G53390.1p  transcript_id AT3G53390.1  
At3g53390	chr3:019792781	0.0	W/19792781-19792963,19793174-19793491,19793595-19793703,19793792-19793885,19794335-19794422,19794517-19794600,19794788-19794884,19794970-19795057,19795197-19795307,19795387-19795474,19796012-19796428	AT3G53390.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT2G37160.2); Has 10454 Blast hits to 6014 proteins in 361 species: Archae - 24; Bacteria - 2782; Metazoa - 3495; Fungi - 1897; Plants - 786; Viruses - 0; Other Eukaryotes - 1470 (source: NCBI BLink).  protein_id AT3G53390.2p  transcript_id AT3G53390.2  protein_id AT3G53390.2p  transcript_id AT3G53390.2  
At3g53402	chr3:019798340	0.0	W/19798340-19798456	AT3G53402.1  CDS  gene_syn CPuORF46, Conserved peptide upstream open reading frame 46  gene CPuORF46  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF46 represents a conserved upstream opening reading frame relative to major ORF AT3G53400.1  go_component mitochondrion|GO:0005739||IEA  product CPuORF46 (Conserved peptide upstream open reading frame 46)  note Conserved peptide upstream open reading frame 46 (CPuORF46); LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: CPUORF47 (CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 47) (TAIR:AT5G03190.3); Has 4 Blast hits to 4 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G53402.1p  transcript_id AT3G53402.1  protein_id AT3G53402.1p  transcript_id AT3G53402.1  
At3g53400	chr3:019798526	0.0	W/19798526-19799926	AT3G53400.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: CPUORF47 (CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 47) (TAIR:AT5G03190.1); Has 120 Blast hits to 120 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G53400.1p  transcript_id AT3G53400.1  protein_id AT3G53400.1p  transcript_id AT3G53400.1  
At3g53403	chr3:019800361	0.0	C/19800361-19800695	AT3G53403.1  pseudogenic_transcript  pseudo  function Pseudogene of AT3G53410; zinc finger (C3HC4-type RING finger) family protein  
At3g53410	chr3:019801979	0.0	C/19801979-19802274,19801389-19801875,19801175-19801291	AT3G53410.1  CDS  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G09770.1); Has 1550 Blast hits to 1550 proteins in 165 species: Archae - 0; Bacteria - 0; Metazoa - 783; Fungi - 60; Plants - 277; Viruses - 82; Other Eukaryotes - 348 (source: NCBI BLink).  protein_id AT3G53410.1p  transcript_id AT3G53410.1  protein_id AT3G53410.1p  transcript_id AT3G53410.1  
At3g53420	chr3:019805148	0.0	C/19805148-19805454,19804384-19804679,19804116-19804256,19803906-19804025	AT3G53420.1  CDS  gene_syn PIP2, PIP2;1, PIP2A, PLASMA MEMBRANE INTRINSIC PROTEIN 2, PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, PLASMA MEMBRANE INTRINSIC PROTEIN 2A  gene PIP2A  function a member of the plasma membrane intrinsic protein subfamily PIP2. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed specifically in the vascular bundles and protein level increases slightly during leaf dev  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component plasma membrane|GO:0005886|7920711|IDA  go_component plasma membrane|GO:0005886|7920711|TAS  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_process water transport|GO:0006833|7920711|IDA  go_process response to water deprivation|GO:0009414|16235111|IEP  go_process response to salt stress|GO:0009651|16183846|IEP  go_function water channel activity|GO:0015250|7920711|IDA  go_function water channel activity|GO:0015250||ISS  product PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A); water channel  note PLASMA MEMBRANE INTRINSIC PROTEIN 2A (PIP2A); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, response to salt stress, response to water deprivation, water transport; LOCATED IN: plasma membrane, chloroplast, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2); water channel (TAIR:AT2G37170.1); Has 6844 Blast hits to 6836 proteins in 1260 species: Archae - 57; Bacteria - 2660; Metazoa - 1276; Fungi - 294; Plants - 1492; Viruses - 2; Other Eukaryotes - 1063 (source: NCBI BLink).  protein_id AT3G53420.1p  transcript_id AT3G53420.1  protein_id AT3G53420.1p  transcript_id AT3G53420.1  
At3g53420	chr3:019805148	0.0	C/19805148-19805454,19804384-19804679,19804116-19804256,19803906-19804025	AT3G53420.2  CDS  gene_syn PIP2, PIP2;1, PIP2A, PLASMA MEMBRANE INTRINSIC PROTEIN 2, PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, PLASMA MEMBRANE INTRINSIC PROTEIN 2A  gene PIP2A  function a member of the plasma membrane intrinsic protein subfamily PIP2. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed specifically in the vascular bundles and protein level increases slightly during leaf dev  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component plasma membrane|GO:0005886|7920711|IDA  go_component plasma membrane|GO:0005886|7920711|TAS  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_process water transport|GO:0006833|7920711|IDA  go_process response to water deprivation|GO:0009414|16235111|IEP  go_process response to salt stress|GO:0009651|16183846|IEP  go_function water channel activity|GO:0015250|7920711|IDA  go_function water channel activity|GO:0015250||ISS  product PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A); water channel  note PLASMA MEMBRANE INTRINSIC PROTEIN 2A (PIP2A); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, response to salt stress, response to water deprivation, water transport; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2); water channel (TAIR:AT2G37170.1); Has 6844 Blast hits to 6836 proteins in 1260 species: Archae - 57; Bacteria - 2660; Metazoa - 1276; Fungi - 294; Plants - 1492; Viruses - 2; Other Eukaryotes - 1063 (source: NCBI BLink).  protein_id AT3G53420.2p  transcript_id AT3G53420.2  protein_id AT3G53420.2p  transcript_id AT3G53420.2  
At3g53430	chr3:019809895	0.0	C/19809895-19810395	AT3G53430.1  CDS  go_component membrane|GO:0016020|17432890|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_component cytosolic large ribosomal subunit|GO:0022625||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L12 (RPL12B)  note 60S ribosomal protein L12 (RPL12B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, ribosome, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L11 (InterPro:IPR000911); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L12 (RPL12A) (TAIR:AT2G37190.1); Has 1163 Blast hits to 1163 proteins in 435 species: Archae - 208; Bacteria - 279; Metazoa - 292; Fungi - 110; Plants - 81; Viruses - 0; Other Eukaryotes - 193 (source: NCBI BLink).  protein_id AT3G53430.1p  transcript_id AT3G53430.1  protein_id AT3G53430.1p  transcript_id AT3G53430.1  
At3g53440	chr3:019810936	0.0	W/19810936-19812474	AT3G53440.1  CDS  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), MYB-like (InterPro:IPR017877); Has 5013 Blast hits to 2696 proteins in 201 species: Archae - 0; Bacteria - 63; Metazoa - 2538; Fungi - 339; Plants - 161; Viruses - 23; Other Eukaryotes - 1889 (source: NCBI BLink).  protein_id AT3G53440.1p  transcript_id AT3G53440.1  protein_id AT3G53440.1p  transcript_id AT3G53440.1  
At3g53440	chr3:019810936	0.0	W/19810936-19812474	AT3G53440.2  CDS  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), MYB-like (InterPro:IPR017877); Has 5013 Blast hits to 2696 proteins in 201 species: Archae - 0; Bacteria - 63; Metazoa - 2538; Fungi - 339; Plants - 161; Viruses - 23; Other Eukaryotes - 1889 (source: NCBI BLink).  protein_id AT3G53440.2p  transcript_id AT3G53440.2  protein_id AT3G53440.2p  transcript_id AT3G53440.2  
At3g53450	chr3:019815308	0.0	C/19815308-19815430,19814823-19814920,19814677-19814707,19814301-19814400,19813393-19813463,19813148-19813291,19812977-19813057	AT3G53450.1  CDS  go_process lysine biosynthetic process via diaminopimelate|GO:0009089||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lysine biosynthetic process via diaminopimelate; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37210.1); Has 3213 Blast hits to 3211 proteins in 782 species: Archae - 6; Bacteria - 1871; Metazoa - 10; Fungi - 79; Plants - 196; Viruses - 0; Other Eukaryotes - 1051 (source: NCBI BLink).  protein_id AT3G53450.1p  transcript_id AT3G53450.1  protein_id AT3G53450.1p  transcript_id AT3G53450.1  
At3g53460	chr3:019821037	0.0	C/19821037-19821423,19820787-19820888,19819903-19820376,19819738-19819803	AT3G53460.1  CDS  gene_syn CHLOROPLAST RNA-BINDING PROTEIN 29, CP29  gene CP29  function Encodes a nuclear gene with a consensus RNA-binding domain that is localized to the chloroplast.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast|GO:0009507|7894017|IDA  go_function RNA binding|GO:0003723|7894017|ISS  go_function RNA binding|GO:0003723||ISS  go_function poly(U) binding|GO:0008266|17511964|IDA  product CP29; RNA binding / poly(U) binding  note CP29; FUNCTIONS IN: RNA binding, poly(U) binding; LOCATED IN: thylakoid, chloroplast stroma, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative (TAIR:AT2G37220.1); Has 76348 Blast hits to 29282 proteins in 1341 species: Archae - 80; Bacteria - 8896; Metazoa - 40135; Fungi - 7374; Plants - 11426; Viruses - 473; Other Eukaryotes - 7964 (source: NCBI BLink).  protein_id AT3G53460.1p  transcript_id AT3G53460.1  protein_id AT3G53460.1p  transcript_id AT3G53460.1  
At3g53460	chr3:019821037	0.0	C/19821037-19821423,19820787-19820888,19819903-19820376,19819738-19819803	AT3G53460.2  CDS  gene_syn CHLOROPLAST RNA-BINDING PROTEIN 29, CP29  gene CP29  function Encodes a nuclear gene with a consensus RNA-binding domain that is localized to the chloroplast.  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast|GO:0009507|7894017|IDA  go_function RNA binding|GO:0003723|7894017|ISS  go_function RNA binding|GO:0003723||ISS  go_function poly(U) binding|GO:0008266|17511964|IDA  product CP29; RNA binding / poly(U) binding  note CP29; FUNCTIONS IN: RNA binding, poly(U) binding; LOCATED IN: thylakoid, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative (TAIR:AT2G37220.1); Has 76348 Blast hits to 29282 proteins in 1341 species: Archae - 80; Bacteria - 8896; Metazoa - 40135; Fungi - 7374; Plants - 11426; Viruses - 473; Other Eukaryotes - 7964 (source: NCBI BLink).  protein_id AT3G53460.2p  transcript_id AT3G53460.2  protein_id AT3G53460.2p  transcript_id AT3G53460.2  
At3g53470	chr3:019822813	0.0	W/19822813-19822942,19823018-19823298	AT3G53470.2  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 16 Blast hits to 16 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G53470.2p  transcript_id AT3G53470.2  protein_id AT3G53470.2p  transcript_id AT3G53470.2  
At3g53470	chr3:019822813	0.0	W/19822813-19822942,19823021-19823298	AT3G53470.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 16 Blast hits to 16 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G53470.1p  transcript_id AT3G53470.1  protein_id AT3G53470.1p  transcript_id AT3G53470.1  
At3g53480	chr3:019825366	0.0	W/19825366-19825757,19825841-19825964,19826051-19826136,19826213-19826297,19826403-19826562,19826647-19826723,19826819-19826872,19826951-19827041,19827133-19827434,19827523-19827804,19827895-19828208,19828294-19828454,19828542-19828645,19828742-19828895,19828988-19829116,19829188-19829261,19829356-19829688,19829772-19830062,19830156-19830239,19830326-19830459,19830546-19830773,19830858-19831284,19831378-19831644	AT3G53480.1  CDS  gene_syn ABCG37, ATPDR9, PDR9, PLEIOTROPIC DRUG RESISTANCE 9  gene PDR9  go_component plasma membrane|GO:0005886|16618929|IDA  go_process multidrug transport|GO:0006855|16506311|ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product PDR9 (PLEIOTROPIC DRUG RESISTANCE 9); ATPase, coupled to transmembrane movement of substances  note PLEIOTROPIC DRUG RESISTANCE 9 (PDR9); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: multidrug transport; LOCATED IN: plasma membrane; EXPRESSED IN: leaf whorl, hypocotyl, flower, root, callus; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 (InterPro:IPR000412), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PDR5 (PLEIOTROPIC DRUG RESISTANCE 5); ATPase, coupled to transmembrane movement of substances (TAIR:AT2G37280.1); Has 245182 Blast hits to 169705 proteins in 2597 species: Archae - 4997; Bacteria - 176124; Metazoa - 8472; Fungi - 4651; Plants - 3154; Viruses - 7; Other Eukaryotes - 47777 (source: NCBI BLink).  protein_id AT3G53480.1p  transcript_id AT3G53480.1  protein_id AT3G53480.1p  transcript_id AT3G53480.1  
At3g53490	chr3:019832666	0.0	W/19832666-19832744,19832869-19833044,19833418-19833610,19833795-19834024	AT3G53490.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G02720.1); Has 34 Blast hits to 34 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G53490.1p  transcript_id AT3G53490.1  protein_id AT3G53490.1p  transcript_id AT3G53490.1  
At3g53500	chr3:019835873	0.0	C/19835873-19835896,19835660-19835755,19835370-19835563,19835180-19835281,19834557-19834872	AT3G53500.1  CDS  gene_syn RSZ32  gene RSZ32  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|12176998|TAS  go_process RNA splicing|GO:0008380|16807317|NAS  go_function nucleic acid binding|GO:0003676||ISS  product zinc knuckle (CCHC-type) family protein  note RSZ32; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, CCHC retroviral-type (InterPro:IPR013084); BEST Arabidopsis thaliana protein match is: RSZ33; nucleic acid binding / nucleotide binding / zinc ion binding (TAIR:AT2G37340.3); Has 16003 Blast hits to 13014 proteins in 382 species: Archae - 0; Bacteria - 4; Metazoa - 5442; Fungi - 739; Plants - 919; Viruses - 8095; Other Eukaryotes - 804 (source: NCBI BLink).  protein_id AT3G53500.1p  transcript_id AT3G53500.1  protein_id AT3G53500.1p  transcript_id AT3G53500.1  
At3g53500	chr3:019836401	0.0	C/19836401-19836507,19835873-19835912,19835660-19835755,19835370-19835563,19835180-19835281,19834557-19834872	AT3G53500.2  CDS  gene_syn RSZ32  gene RSZ32  go_component mitochondrion|GO:0005739||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|12176998|TAS  go_process RNA splicing|GO:0008380|16807317|NAS  go_function nucleic acid binding|GO:0003676||ISS  product zinc knuckle (CCHC-type) family protein  note RSZ32; FUNCTIONS IN: zinc ion binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: RSZ33; nucleic acid binding / nucleotide binding / zinc ion binding (TAIR:AT2G37340.1); Has 19457 Blast hits to 16188 proteins in 516 species: Archae - 6; Bacteria - 235; Metazoa - 7507; Fungi - 1066; Plants - 1444; Viruses - 8093; Other Eukaryotes - 1106 (source: NCBI BLink).  protein_id AT3G53500.2p  transcript_id AT3G53500.2  protein_id AT3G53500.2p  transcript_id AT3G53500.2  
At3g53510	chr3:019837302	0.0	C/19837302-19839521	AT3G53510.1  CDS  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ABC transporter family protein  note ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 (InterPro:IPR000412), Pigment precursor permease (InterPro:IPR005284), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT2G37360.1); Has 228569 Blast hits to 208343 proteins in 2649 species: Archae - 4215; Bacteria - 158777; Metazoa - 7672; Fungi - 4160; Plants - 2792; Viruses - 12; Other Eukaryotes - 50941 (source: NCBI BLink).  protein_id AT3G53510.1p  transcript_id AT3G53510.1  protein_id AT3G53510.1p  transcript_id AT3G53510.1  
At3g53520	chr3:019841635	0.0	W/19841635-19842255,19842504-19842651,19842740-19842819,19843105-19843188,19843282-19843356,19843462-19843554,19843851-19844057	AT3G53520.1  CDS  gene_syn ATUXS1, UDP-GLUCURONIC ACID DECARBOXYLASE 1, UXS1  gene UXS1  function Encodes an isoform of UDP-glucuronic acid decarboxylase, which is predicted to be membrane-bound by PSORT analysis. This enzyme produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.  go_component membrane|GO:0016020|17432890|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component membrane|GO:0016020|12481102|TAS  go_process nucleotide-sugar metabolic process|GO:0009225||ISS  go_process D-xylose metabolic process|GO:0042732|12481102|IDA  go_function catalytic activity|GO:0003824||ISS  go_function UDP-glucuronate decarboxylase activity|GO:0048040|12481102|IDA  product UXS1 (UDP-GLUCURONIC ACID DECARBOXYLASE 1); UDP-glucuronate decarboxylase/ catalytic  note UDP-GLUCURONIC ACID DECARBOXYLASE 1 (UXS1); FUNCTIONS IN: UDP-glucuronate decarboxylase activity, catalytic activity; INVOLVED IN: D-xylose metabolic process, nucleotide-sugar metabolic process; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: AUD1; UDP-glucuronate decarboxylase/ catalytic/ dTDP-glucose 4,6-dehydratase (TAIR:AT3G62830.2); Has 33636 Blast hits to 33602 proteins in 1738 species: Archae - 507; Bacteria - 15229; Metazoa - 692; Fungi - 259; Plants - 902; Viruses - 82; Other Eukaryotes - 15965 (source: NCBI BLink).  protein_id AT3G53520.1p  transcript_id AT3G53520.1  protein_id AT3G53520.1p  transcript_id AT3G53520.1  
At3g53520	chr3:019841635	0.0	W/19841635-19842255,19842504-19842651,19842740-19842819,19843105-19843188,19843282-19843356,19843468-19843554,19843851-19844057	AT3G53520.2  CDS  gene_syn ATUXS1, UDP-GLUCURONIC ACID DECARBOXYLASE 1, UXS1  gene UXS1  function Encodes an isoform of UDP-glucuronic acid decarboxylase, which is predicted to be membrane-bound by PSORT analysis. This enzyme produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.  go_component membrane|GO:0016020|17432890|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component membrane|GO:0016020|12481102|TAS  go_process nucleotide-sugar metabolic process|GO:0009225||ISS  go_process D-xylose metabolic process|GO:0042732|12481102|IDA  go_function catalytic activity|GO:0003824||ISS  go_function UDP-glucuronate decarboxylase activity|GO:0048040|12481102|IDA  product UXS1 (UDP-GLUCURONIC ACID DECARBOXYLASE 1); UDP-glucuronate decarboxylase/ catalytic  note UDP-GLUCURONIC ACID DECARBOXYLASE 1 (UXS1); FUNCTIONS IN: UDP-glucuronate decarboxylase activity, catalytic activity; INVOLVED IN: D-xylose metabolic process, nucleotide-sugar metabolic process; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: AUD1; UDP-glucuronate decarboxylase/ catalytic/ dTDP-glucose 4,6-dehydratase (TAIR:AT3G62830.2); Has 31528 Blast hits to 31508 proteins in 1721 species: Archae - 497; Bacteria - 14542; Metazoa - 671; Fungi - 246; Plants - 844; Viruses - 78; Other Eukaryotes - 14650 (source: NCBI BLink).  protein_id AT3G53520.2p  transcript_id AT3G53520.2  protein_id AT3G53520.2p  transcript_id AT3G53520.2  
At3g53520	chr3:019841635	0.0	W/19841635-19842255,19842504-19842651,19842740-19842819,19843105-19843188,19843282-19843360,19843468-19843520	AT3G53520.3  CDS  gene_syn ATUXS1, UDP-GLUCURONIC ACID DECARBOXYLASE 1, UXS1  gene UXS1  function Encodes an isoform of UDP-glucuronic acid decarboxylase, which is predicted to be membrane-bound by PSORT analysis. This enzyme produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.  go_component membrane|GO:0016020|17432890|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component membrane|GO:0016020|12481102|TAS  go_process nucleotide-sugar metabolic process|GO:0009225||ISS  go_process D-xylose metabolic process|GO:0042732|12481102|IDA  go_function catalytic activity|GO:0003824||ISS  go_function UDP-glucuronate decarboxylase activity|GO:0048040|12481102|IDA  product UXS1 (UDP-GLUCURONIC ACID DECARBOXYLASE 1); UDP-glucuronate decarboxylase/ catalytic  note UDP-GLUCURONIC ACID DECARBOXYLASE 1 (UXS1); FUNCTIONS IN: UDP-glucuronate decarboxylase activity, catalytic activity; INVOLVED IN: D-xylose metabolic process, nucleotide-sugar metabolic process; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: AUD1; UDP-glucuronate decarboxylase/ catalytic/ dTDP-glucose 4,6-dehydratase (TAIR:AT3G62830.2); Has 26646 Blast hits to 26635 proteins in 1697 species: Archae - 463; Bacteria - 12812; Metazoa - 612; Fungi - 209; Plants - 744; Viruses - 67; Other Eukaryotes - 11739 (source: NCBI BLink).  protein_id AT3G53520.3p  transcript_id AT3G53520.3  protein_id AT3G53520.3p  transcript_id AT3G53520.3  
At3g53530	chr3:019845199	0.0	W/19845199-19845702,19845808-19845889,19846423-19846583	AT3G53530.2  CDS  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_process metal ion transport|GO:0030001||ISS  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121), Copper chaperone, chloroplast-targeted, predicted (InterPro:IPR016578); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT2G37390.1); Has 307 Blast hits to 295 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 307; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G53530.2p  transcript_id AT3G53530.2  protein_id AT3G53530.2p  transcript_id AT3G53530.2  
At3g53530	chr3:019845199	0.0	W/19845199-19845702,19845808-19845889,19846426-19846583	AT3G53530.1  CDS  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_process metal ion transport|GO:0030001||ISS  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121), Copper chaperone, chloroplast-targeted, predicted (InterPro:IPR016578); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT2G37390.1); Has 451 Blast hits to 426 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 449; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G53530.1p  transcript_id AT3G53530.1  protein_id AT3G53530.1p  transcript_id AT3G53530.1  
At3g53540	chr3:019850598	0.0	C/19850598-19850670,19849720-19849811,19847799-19849622,19847546-19847726,19846805-19847409	AT3G53540.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  product unknown protein  note unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28760.2); Has 1434 Blast hits to 670 proteins in 158 species: Archae - 2; Bacteria - 296; Metazoa - 329; Fungi - 179; Plants - 159; Viruses - 2; Other Eukaryotes - 467 (source: NCBI BLink).  protein_id AT3G53540.1p  transcript_id AT3G53540.1  protein_id AT3G53540.1p  transcript_id AT3G53540.1  
At3g53550	chr3:019856870	0.0	W/19856870-19856875,19857123-19857273,19857454-19857662,19857759-19857848,19857994-19858308	AT3G53550.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44850.1); Has 264 Blast hits to 243 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 264; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G53550.1p  transcript_id AT3G53550.1  protein_id AT3G53550.1p  transcript_id AT3G53550.1  
At3g53560	chr3:019859954	0.0	C/19859954-19860976	AT3G53560.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_function binding|GO:0005488||IEA  go_component chloroplast thylakoid lumen|GO:0009543||ISS  go_process biological_process|GO:0008150||ND  product chloroplast lumen common family protein  note chloroplast lumen common family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: chloroplast lumen common family protein (TAIR:AT2G37400.1); Has 1030 Blast hits to 893 proteins in 216 species: Archae - 63; Bacteria - 452; Metazoa - 103; Fungi - 14; Plants - 65; Viruses - 0; Other Eukaryotes - 333 (source: NCBI BLink).  protein_id AT3G53560.1p  transcript_id AT3G53560.1  protein_id AT3G53560.1p  transcript_id AT3G53560.1  
At3g53570	chr3:019863958	0.0	C/19863958-19864083,19863632-19863806,19863503-19863529,19863222-19863375,19863090-19863138,19862863-19862977,19862553-19862644,19862276-19862432,19862123-19862187,19861932-19862029,19861728-19861833,19861449-19861646	AT3G53570.3  CDS  gene_syn AFC1, AME2, ARABIDOPSIS FUS3-COMPLEMENTING GENE 1, CLK/STY (LAMMER-TYPE) PROTEIN KINASE  gene AFC1  function a member of a CDC2-related kinase subfamily, the LAMMER kinases. activates STE12-dependent functions in yeast.  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_process regulation of transcription|GO:0045449|7991592|TAS  go_function kinase activity|GO:0016301||ISS  product AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note ARABIDOPSIS FUS3-COMPLEMENTING GENE 1 (AFC1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2); kinase/ protein kinase (TAIR:AT4G24740.1); Has 63884 Blast hits to 62792 proteins in 1506 species: Archae - 25; Bacteria - 4293; Metazoa - 29575; Fungi - 7888; Plants - 7934; Viruses - 289; Other Eukaryotes - 13880 (source: NCBI BLink).  protein_id AT3G53570.3p  transcript_id AT3G53570.3  protein_id AT3G53570.3p  transcript_id AT3G53570.3  
At3g53570	chr3:019863958	0.0	C/19863958-19864125,19863632-19863806,19863503-19863529,19863222-19863375,19863090-19863138,19862863-19862977,19862553-19862644,19862276-19862432,19862123-19862187,19861932-19862029,19861728-19861833,19861449-19861646	AT3G53570.1  CDS  gene_syn AFC1, AME2, ARABIDOPSIS FUS3-COMPLEMENTING GENE 1, CLK/STY (LAMMER-TYPE) PROTEIN KINASE  gene AFC1  function a member of a CDC2-related kinase subfamily, the LAMMER kinases. activates STE12-dependent functions in yeast.  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_process regulation of transcription|GO:0045449|7991592|TAS  go_function kinase activity|GO:0016301||ISS  product AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note ARABIDOPSIS FUS3-COMPLEMENTING GENE 1 (AFC1); FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2); kinase/ protein kinase (TAIR:AT4G24740.1); Has 63892 Blast hits to 62800 proteins in 1506 species: Archae - 25; Bacteria - 4293; Metazoa - 29581; Fungi - 7888; Plants - 7940; Viruses - 289; Other Eukaryotes - 13876 (source: NCBI BLink).  protein_id AT3G53570.1p  transcript_id AT3G53570.1  protein_id AT3G53570.1p  transcript_id AT3G53570.1  
At3g53570	chr3:019863958	0.0	C/19863958-19864125,19863632-19863806,19863503-19863529,19863222-19863375,19863090-19863138,19862863-19862977,19862553-19862644,19862276-19862432,19862123-19862187,19861932-19862029,19861728-19861833,19861449-19861646	AT3G53570.2  CDS  gene_syn AFC1, AME2, ARABIDOPSIS FUS3-COMPLEMENTING GENE 1, CLK/STY (LAMMER-TYPE) PROTEIN KINASE  gene AFC1  function a member of a CDC2-related kinase subfamily, the LAMMER kinases. activates STE12-dependent functions in yeast.  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_process regulation of transcription|GO:0045449|7991592|TAS  go_function kinase activity|GO:0016301||ISS  product AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note ARABIDOPSIS FUS3-COMPLEMENTING GENE 1 (AFC1); FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2); kinase/ protein kinase (TAIR:AT4G24740.1); Has 63892 Blast hits to 62800 proteins in 1506 species: Archae - 25; Bacteria - 4293; Metazoa - 29581; Fungi - 7888; Plants - 7940; Viruses - 289; Other Eukaryotes - 13876 (source: NCBI BLink).  protein_id AT3G53570.2p  transcript_id AT3G53570.2  protein_id AT3G53570.2p  transcript_id AT3G53570.2  
At3g53570	chr3:019863958	0.0	C/19863958-19864125,19863632-19863806,19863503-19863529,19863222-19863375,19863090-19863138,19862863-19862977,19862553-19862644,19862276-19862432,19862123-19862187,19861932-19862029,19861728-19861833,19861449-19861646	AT3G53570.4  CDS  gene_syn AFC1, AME2, ARABIDOPSIS FUS3-COMPLEMENTING GENE 1, CLK/STY (LAMMER-TYPE) PROTEIN KINASE  gene AFC1  function a member of a CDC2-related kinase subfamily, the LAMMER kinases. activates STE12-dependent functions in yeast.  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_process regulation of transcription|GO:0045449|7991592|TAS  go_function kinase activity|GO:0016301||ISS  product AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note ARABIDOPSIS FUS3-COMPLEMENTING GENE 1 (AFC1); FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2); kinase/ protein kinase (TAIR:AT4G24740.1); Has 63892 Blast hits to 62800 proteins in 1506 species: Archae - 25; Bacteria - 4293; Metazoa - 29581; Fungi - 7888; Plants - 7940; Viruses - 289; Other Eukaryotes - 13876 (source: NCBI BLink).  protein_id AT3G53570.4p  transcript_id AT3G53570.4  protein_id AT3G53570.4p  transcript_id AT3G53570.4  
At3g53580	chr3:019864784	0.0	W/19864784-19865059,19865166-19865333,19865411-19865481,19865582-19865639,19865743-19865922,19866011-19866095,19866218-19866277,19866379-19866452,19866791-19866907	AT3G53580.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process lysine biosynthetic process via diaminopimelate|GO:0009089||IEA  go_function diaminopimelate epimerase activity|GO:0008837|15652176|IGI  go_function diaminopimelate epimerase activity|GO:0008837||ISS  product diaminopimelate epimerase family protein  note diaminopimelate epimerase family protein; FUNCTIONS IN: diaminopimelate epimerase activity; INVOLVED IN: lysine biosynthetic process via diaminopimelate; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Diaminopimelate epimerase, active site (InterPro:IPR018510), Diaminopimelate epimerase (InterPro:IPR001653); Has 5079 Blast hits to 5075 proteins in 1167 species: Archae - 51; Bacteria - 2343; Metazoa - 5; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 2658 (source: NCBI BLink).  protein_id AT3G53580.1p  transcript_id AT3G53580.1  protein_id AT3G53580.1p  transcript_id AT3G53580.1  
At3g53590	chr3:019871587	0.0	C/19871587-19871651,19871273-19871416,19871107-19871178,19870962-19871033,19870796-19870870,19870627-19870695,19870446-19870514,19870253-19870324,19870087-19870170,19869934-19869991,19869217-19869565,19868977-19869075,19868601-19868884,19868458-19868509,19868081-19868352,19867775-19867963,19867379-19867705	AT3G53590.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATP binding / kinase/ protein serine/threonine kinase (TAIR:AT5G01950.1); Has 139742 Blast hits to 97753 proteins in 3156 species: Archae - 72; Bacteria - 11485; Metazoa - 52007; Fungi - 7106; Plants - 51324; Viruses - 346; Other Eukaryotes - 17402 (source: NCBI BLink).  protein_id AT3G53590.1p  transcript_id AT3G53590.1  protein_id AT3G53590.1p  transcript_id AT3G53590.1  
At3g53600	chr3:019875532	0.0	W/19875532-19876059	AT3G53600.1  CDS  go_component intracellular|GO:0005622||IEA  go_process response to chitin|GO:0010200|17722694|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: response to chitin, regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (ZAT11) (TAIR:AT2G37430.1); Has 612 Blast hits to 593 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 148; Fungi - 1; Plants - 463; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G53600.1p  transcript_id AT3G53600.1  protein_id AT3G53600.1p  transcript_id AT3G53600.1  
At3g53610	chr3:019878192	0.0	C/19878192-19878264,19877691-19877763,19877502-19877602,19877335-19877400,19877084-19877181,19876929-19876991,19876740-19876832,19876531-19876614	AT3G53610.1  CDS  gene_syn ATRAB8, AtRABE1a, AtRab8B, GTPASE ATRAB8  gene ATRAB8  function GTPase AtRAB8 (atrab8)  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product ATRAB8; GTP binding  note ATRAB8; FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: Ras-related GTP-binding family protein (TAIR:AT5G59840.1); Has 23667 Blast hits to 23622 proteins in 651 species: Archae - 17; Bacteria - 124; Metazoa - 13119; Fungi - 2896; Plants - 2235; Viruses - 19; Other Eukaryotes - 5257 (source: NCBI BLink).  protein_id AT3G53610.1p  transcript_id AT3G53610.1  protein_id AT3G53610.1p  transcript_id AT3G53610.1  
At3g53610	chr3:019878192	0.0	C/19878192-19878264,19877691-19877763,19877502-19877602,19877335-19877400,19877084-19877181,19876929-19876991,19876740-19876832,19876531-19876614	AT3G53610.2  CDS  gene_syn ATRAB8, AtRABE1a, AtRab8B, GTPASE ATRAB8  gene ATRAB8  function GTPase AtRAB8 (atrab8)  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product ATRAB8; GTP binding  note ATRAB8; FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: Ras-related GTP-binding family protein (TAIR:AT5G59840.1); Has 23667 Blast hits to 23622 proteins in 651 species: Archae - 17; Bacteria - 124; Metazoa - 13119; Fungi - 2896; Plants - 2235; Viruses - 19; Other Eukaryotes - 5257 (source: NCBI BLink).  protein_id AT3G53610.2p  transcript_id AT3G53610.2  protein_id AT3G53610.2p  transcript_id AT3G53610.2  
At3g53610	chr3:019878192	0.0	C/19878192-19878264,19877691-19877763,19877502-19877602,19877335-19877400,19877084-19877181,19876929-19876991,19876740-19876832,19876531-19876614	AT3G53610.3  CDS  gene_syn ATRAB8, AtRABE1a, AtRab8B, GTPASE ATRAB8  gene ATRAB8  function GTPase AtRAB8 (atrab8)  go_component plasma membrane|GO:0005886|17317660|IDA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product ATRAB8; GTP binding  note ATRAB8; FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: Ras-related GTP-binding family protein (TAIR:AT5G59840.1); Has 23667 Blast hits to 23622 proteins in 651 species: Archae - 17; Bacteria - 124; Metazoa - 13119; Fungi - 2896; Plants - 2235; Viruses - 19; Other Eukaryotes - 5257 (source: NCBI BLink).  protein_id AT3G53610.3p  transcript_id AT3G53610.3  protein_id AT3G53610.3p  transcript_id AT3G53610.3  
At3g53611	chr3:019878542	0.0	W/19878542-19878694	AT3G53611.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G53611.1p  transcript_id AT3G53611.1  protein_id AT3G53611.1p  transcript_id AT3G53611.1  
At3g53620	chr3:019881491	0.0	W/19881491-19881626,19881737-19881765,19882066-19882131,19882216-19882323,19882712-19882777,19882860-19882980,19883057-19883138,19883266-19883308	AT3G53620.1  CDS  gene_syn Arabidopsis thaliana pyrophosphorylase 4, AtPPa4  gene AtPPa4  function Encodes a soluble protein with inorganic pyrophosphatase activity that is highly specific for Mg-inorganic pyrophosphate.  go_component cytoplasm|GO:0005737||IEA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component membrane|GO:0016020||ISS  go_process metabolic process|GO:0008152||ISS  go_function inorganic diphosphatase activity|GO:0004427||IDA  product AtPPa4 (Arabidopsis thaliana pyrophosphorylase 4); inorganic diphosphatase  note Arabidopsis thaliana pyrophosphorylase 4 (AtPPa4); FUNCTIONS IN: inorganic diphosphatase activity; INVOLVED IN: response to cadmium ion, metabolic process; LOCATED IN: membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inorganic pyrophosphatase (InterPro:IPR008162); BEST Arabidopsis thaliana protein match is: AtPPa1 (Arabidopsis thaliana pyrophosphorylase 1); inorganic diphosphatase (TAIR:AT1G01050.1); Has 4127 Blast hits to 4127 proteins in 1147 species: Archae - 108; Bacteria - 2773; Metazoa - 194; Fungi - 190; Plants - 182; Viruses - 0; Other Eukaryotes - 680 (source: NCBI BLink).  protein_id AT3G53620.1p  transcript_id AT3G53620.1  protein_id AT3G53620.1p  transcript_id AT3G53620.1  
At3g53630	chr3:019883986	0.0	W/19883986-19884563,19885562-19885568	AT3G53630.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G18692.1); Has 27 Blast hits to 27 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G53630.1p  transcript_id AT3G53630.1  protein_id AT3G53630.1p  transcript_id AT3G53630.1  
At3g53640	chr3:019887007	0.0	C/19887007-19888935	AT3G53640.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component nucleus|GO:0005634|15469496|IDA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G13350.1); Has 68411 Blast hits to 66193 proteins in 1688 species: Archae - 62; Bacteria - 5094; Metazoa - 31322; Fungi - 8135; Plants - 8129; Viruses - 377; Other Eukaryotes - 15292 (source: NCBI BLink).  protein_id AT3G53640.1p  transcript_id AT3G53640.1  protein_id AT3G53640.1p  transcript_id AT3G53640.1  
At3g53650	chr3:019889358	0.0	W/19889358-19889774	AT3G53650.1  CDS  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product histone H2B, putative  note histone H2B, putative; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H2B, putative (TAIR:AT5G02570.1); Has 2705 Blast hits to 2699 proteins in 275 species: Archae - 0; Bacteria - 2; Metazoa - 1852; Fungi - 166; Plants - 360; Viruses - 0; Other Eukaryotes - 325 (source: NCBI BLink).  protein_id AT3G53650.1p  transcript_id AT3G53650.1  protein_id AT3G53650.1p  transcript_id AT3G53650.1  
At3g53668	chr3:019890708	0.0	W/19890708-19890833	AT3G53668.1  CDS  gene_syn CPuORF51, Conserved peptide upstream open reading frame 51  gene CPuORF51  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF51 represents a conserved upstream opening reading frame relative to major ORF AT3G53670.1  go_component endomembrane system|GO:0012505||IEA  product CPuORF51 (Conserved peptide upstream open reading frame 51)  note Conserved peptide upstream open reading frame 51 (CPuORF51); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: CPuORF52 (Conserved peptide upstream open reading frame 52) (TAIR:AT2G37478.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G53668.1p  transcript_id AT3G53668.1  protein_id AT3G53668.1p  transcript_id AT3G53668.1  
At3g53670	chr3:019891104	0.0	W/19891104-19891391,19891891-19892214	AT3G53670.1  CDS  gene_syn AT3G53660  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37480.1); Has 146 Blast hits to 143 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 11; Plants - 128; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G53670.1p  transcript_id AT3G53670.1  protein_id AT3G53670.1p  transcript_id AT3G53670.1  
At3g53680	chr3:019896789	0.0	C/19896789-19897412,19896633-19896701,19896340-19896538,19896120-19896198,19895826-19895954,19895657-19895722,19895477-19895558,19895324-19895383,19895174-19895226,19894930-19895099,19894575-19894664,19894347-19894486,19894203-19894259,19893882-19894127,19893684-19893745,19893530-19893586,19893342-19893435,19893105-19893245,19892863-19892964	AT3G53680.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product PHD finger transcription factor, putative  note PHD finger transcription factor, putative; FUNCTIONS IN: protein binding, DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT2G37520.1); Has 2475 Blast hits to 2033 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 1857; Fungi - 159; Plants - 315; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).  protein_id AT3G53680.1p  transcript_id AT3G53680.1  protein_id AT3G53680.1p  transcript_id AT3G53680.1  
At3g53690	chr3:019899161	0.0	C/19899161-19900044,19898997-19899075	AT3G53690.1  CDS  gene_syn F5K20.1  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT3G14250.1); Has 2398 Blast hits to 2381 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 1173; Fungi - 447; Plants - 364; Viruses - 0; Other Eukaryotes - 414 (source: NCBI BLink).  protein_id AT3G53690.1p  transcript_id AT3G53690.1  protein_id AT3G53690.1p  transcript_id AT3G53690.1  
At3g53700	chr3:019900303	0.0	W/19900303-19902567	AT3G53700.1  CDS  gene_syn F5K20.2, MEE40, maternal effect embryo arrest 40  gene MEE40  go_component chloroplast|GO:0009507|18431481|IDA  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  product MEE40 (maternal effect embryo arrest 40)  note maternal effect embryo arrest 40 (MEE40); INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G64320.1); Has 24904 Blast hits to 6278 proteins in 203 species: Archae - 6; Bacteria - 40; Metazoa - 903; Fungi - 880; Plants - 21695; Viruses - 0; Other Eukaryotes - 1380 (source: NCBI BLink).  protein_id AT3G53700.1p  transcript_id AT3G53700.1  protein_id AT3G53700.1p  transcript_id AT3G53700.1  
At3g53710	chr3:019904652	0.0	C/19904652-19905419,19904477-19904566,19903730-19904251	AT3G53710.1  CDS  gene_syn AGD6  gene AGD6  function A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.  go_process regulation of ARF GTPase activity|GO:0032312||IEA  go_function ARF GTPase activator activity|GO:0008060||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component nucleus|GO:0005634||ISS  go_component cytosol|GO:0005829|18433157|IDA  go_function DNA binding|GO:0003677||ISS  product AGD6; ARF GTPase activator/ DNA binding / zinc ion binding  note AGD6; FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: AGD7; ARF GTPase activator/ DNA binding / zinc ion binding (TAIR:AT2G37550.2); Has 3237 Blast hits to 3009 proteins in 191 species: Archae - 0; Bacteria - 37; Metazoa - 1773; Fungi - 521; Plants - 302; Viruses - 0; Other Eukaryotes - 604 (source: NCBI BLink).  protein_id AT3G53710.1p  transcript_id AT3G53710.1  protein_id AT3G53710.1p  transcript_id AT3G53710.1  
At3g53710	chr3:019904652	0.0	C/19904652-19905419,19904477-19904566,19903730-19904251	AT3G53710.2  CDS  gene_syn AGD6  gene AGD6  function A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.  go_process regulation of ARF GTPase activity|GO:0032312||IEA  go_function ARF GTPase activator activity|GO:0008060||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component nucleus|GO:0005634||ISS  go_component cytosol|GO:0005829|18433157|IDA  go_function DNA binding|GO:0003677||ISS  product AGD6; ARF GTPase activator/ DNA binding / zinc ion binding  note AGD6; FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: AGD7; ARF GTPase activator/ DNA binding / zinc ion binding (TAIR:AT2G37550.2); Has 3237 Blast hits to 3009 proteins in 191 species: Archae - 0; Bacteria - 37; Metazoa - 1773; Fungi - 521; Plants - 302; Viruses - 0; Other Eukaryotes - 604 (source: NCBI BLink).  protein_id AT3G53710.2p  transcript_id AT3G53710.2  protein_id AT3G53710.2p  transcript_id AT3G53710.2  
At3g53720	chr3:019909848	0.0	C/19909848-19910027,19908711-19909745,19907211-19907447,19906273-19906986,19905826-19906188	AT3G53720.1  CDS  gene_syn ATCHX20, CATION/H+ EXCHANGER 20, CHX20  gene ATCHX20  function member of Putative Na+/H+ antiporter family. Involved in the osmoregulation through K(+) fluxes and possibly pH modulation of an active endomembrane system in guard cells.  go_component endomembrane system|GO:0012505|15347787|IDA  go_component endomembrane system|GO:0012505|17337534|IDA  go_process cation transport|GO:0006812|11500563|IC  go_process cellular potassium ion homeostasis|GO:0030007|17337534|IMP  go_process water homeostasis|GO:0030104|15347787|IMP  go_process water homeostasis|GO:0030104|17337534|IMP  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product ATCHX20 (CATION/H+ EXCHANGER 20); monovalent cation:proton antiporter/ sodium:hydrogen antiporter  note CATION/H+ EXCHANGER 20 (ATCHX20); FUNCTIONS IN: monovalent cation:proton antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cellular potassium ion homeostasis, cation transport, water homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: ATCHX18; monovalent cation:proton antiporter/ sodium:hydrogen antiporter (TAIR:AT5G41610.1); Has 5864 Blast hits to 5842 proteins in 1175 species: Archae - 238; Bacteria - 4326; Metazoa - 9; Fungi - 116; Plants - 300; Viruses - 0; Other Eukaryotes - 875 (source: NCBI BLink).  protein_id AT3G53720.1p  transcript_id AT3G53720.1  protein_id AT3G53720.1p  transcript_id AT3G53720.1  
At3g53730	chr3:019912659	0.0	C/19912659-19912970	AT3G53730.1  CDS  gene_syn F5K20.30  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product histone H4  note histone H4; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125), Histone H4 (InterPro:IPR001951); BEST Arabidopsis thaliana protein match is: histone H4 (TAIR:AT5G59970.1); Has 2716 Blast hits to 2716 proteins in 361 species: Archae - 0; Bacteria - 0; Metazoa - 1566; Fungi - 282; Plants - 355; Viruses - 6; Other Eukaryotes - 507 (source: NCBI BLink).  protein_id AT3G53730.1p  transcript_id AT3G53730.1  protein_id AT3G53730.1p  transcript_id AT3G53730.1  
At3g53740	chr3:019914712	0.0	C/19914712-19914813,19914068-19914267,19913921-19913957	AT3G53740.2  CDS  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L36 (RPL36B)  note 60S ribosomal protein L36 (RPL36B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L36e (InterPro:IPR000509); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L36 (RPL36A) (TAIR:AT2G37600.2); Has 586 Blast hits to 586 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 295; Fungi - 95; Plants - 95; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT3G53740.2p  transcript_id AT3G53740.2  protein_id AT3G53740.2p  transcript_id AT3G53740.2  
At3g53740	chr3:019914712	0.0	C/19914712-19914813,19914068-19914267,19913921-19913957	AT3G53740.3  CDS  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L36 (RPL36B)  note 60S ribosomal protein L36 (RPL36B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L36e (InterPro:IPR000509); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L36 (RPL36A) (TAIR:AT2G37600.2); Has 586 Blast hits to 586 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 295; Fungi - 95; Plants - 95; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT3G53740.3p  transcript_id AT3G53740.3  protein_id AT3G53740.3p  transcript_id AT3G53740.3  
At3g53740	chr3:019914712	0.0	C/19914712-19914813,19914068-19914267,19913921-19913957	AT3G53740.4  CDS  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L36 (RPL36B)  note 60S ribosomal protein L36 (RPL36B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L36e (InterPro:IPR000509); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L36 (RPL36A) (TAIR:AT2G37600.2); Has 586 Blast hits to 586 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 295; Fungi - 95; Plants - 95; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT3G53740.4p  transcript_id AT3G53740.4  protein_id AT3G53740.4p  transcript_id AT3G53740.4  
At3g53740	chr3:019914712	0.0	C/19914712-19914813,19914175-19914267,19914068-19914147,19913921-19913957	AT3G53740.1  CDS  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L36 (RPL36B)  note 60S ribosomal protein L36 (RPL36B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L36e (InterPro:IPR000509); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L36 (RPL36A) (TAIR:AT2G37600.2); Has 563 Blast hits to 563 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 281; Fungi - 93; Plants - 95; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).  protein_id AT3G53740.1p  transcript_id AT3G53740.1  protein_id AT3G53740.1p  transcript_id AT3G53740.1  
At3g53750	chr3:019915924	0.0	W/19915924-19915983,19916122-19916515,19916599-19917212,19917306-19917371	AT3G53750.1  CDS  gene_syn ACT3, actin 3  gene ACT3  function Member of the Actin gene family. Expressed in mature pollen.  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleus|GO:0005634|14617066|IDA  go_component cytoskeleton|GO:0005856||TAS  go_process cytoskeleton organization|GO:0007010||TAS  go_function structural constituent of cytoskeleton|GO:0005200|8597657|ISS  go_function structural constituent of cytoskeleton|GO:0005200||ISS  product ACT3 (actin 3); structural constituent of cytoskeleton  note actin 3 (ACT3); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: cytoskeleton organization; LOCATED IN: cell wall, cytoskeleton, nucleus; EXPRESSED IN: epidermal cell, mesophyll cell, male gametophyte, trichome, seed; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: ACT1 (ACTIN 1); structural constituent of cytoskeleton (TAIR:AT2G37620.2); Has 11143 Blast hits to 10824 proteins in 2294 species: Archae - 8; Bacteria - 4; Metazoa - 4943; Fungi - 2966; Plants - 1107; Viruses - 2; Other Eukaryotes - 2113 (source: NCBI BLink).  protein_id AT3G53750.1p  transcript_id AT3G53750.1  protein_id AT3G53750.1p  transcript_id AT3G53750.1  
At3g53760	chr3:019922095	0.0	C/19922095-19922264,19921717-19922014,19921473-19921609,19921258-19921356,19920908-19921028,19920559-19920831,19920286-19920366,19920126-19920209,19919885-19919971,19919740-19919795,19919414-19919596,19919032-19919257,19918848-19918936,19918511-19918664,19918312-19918434,19918182-19918238	AT3G53760.1  CDS  go_component spindle pole|GO:0000922||IEA  go_component microtubule organizing center|GO:0005815||IEA  go_process microtubule cytoskeleton organization|GO:0000226||IEA  go_function tubulin binding|GO:0015631||ISS  product tubulin family protein  note tubulin family protein; FUNCTIONS IN: tubulin binding; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: spindle pole, microtubule organizing center; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: SPC98 (SPINDLE POLE BODY COMPONENT 98); tubulin binding (TAIR:AT5G06680.1); Has 936 Blast hits to 885 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 476; Fungi - 206; Plants - 82; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink).  protein_id AT3G53760.1p  transcript_id AT3G53760.1  protein_id AT3G53760.1p  transcript_id AT3G53760.1  
At3g53770	chr3:019923328	0.0	W/19923328-19923389,19923514-19923826	AT3G53770.1  CDS  go_process response to stress|GO:0006950||IEA  go_function molecular_function|GO:0003674||ND  product late embryogenesis abundant protein-related / LEA protein-related  note late embryogenesis abundant protein-related / LEA protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein 3 (InterPro:IPR004926); Has 77 Blast hits to 63 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G53770.1p  transcript_id AT3G53770.1  protein_id AT3G53770.1p  transcript_id AT3G53770.1  
At3g53775	chr3:019924377	0.0	W/19924377-19924448	AT3G53775.1  tRNA  gene_syn 67287.TRNA-LYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Lys (anticodon: TTT)  transcript_id AT3G53775.1  
At3g53780	chr3:019925872	0.0	C/19925872-19926025,19925595-19925758,19925258-19925502,19924960-19925086,19924729-19924851	AT3G53780.1  CDS  gene_syn ARABIDOPSIS RHOMBOID-LIKE PROTEIN 4, ATRBL4  gene ATRBL4  go_component plasma membrane|GO:0005886|17317660|IDA  product rhomboid family protein  note ARABIDOPSIS RHOMBOID-LIKE PROTEIN 4 (ATRBL4); LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: ATRBL1 (Arabidopsis thaliana Rhomboid-like 1) (TAIR:AT2G29050.1); Has 4199 Blast hits to 4199 proteins in 1044 species: Archae - 90; Bacteria - 2305; Metazoa - 471; Fungi - 88; Plants - 178; Viruses - 0; Other Eukaryotes - 1067 (source: NCBI BLink).  protein_id AT3G53780.1p  transcript_id AT3G53780.1  protein_id AT3G53780.1p  transcript_id AT3G53780.1  
At3g53780	chr3:019926287	0.0	C/19926287-19926648,19925872-19926035,19925595-19925758,19925258-19925502,19924960-19925086,19924729-19924851	AT3G53780.2  CDS  gene_syn ARABIDOPSIS RHOMBOID-LIKE PROTEIN 4, ATRBL4  gene ATRBL4  go_component plasma membrane|GO:0005886|17317660|IDA  product rhomboid family protein  note ARABIDOPSIS RHOMBOID-LIKE PROTEIN 4 (ATRBL4); LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: ATRBL1 (Arabidopsis thaliana Rhomboid-like 1) (TAIR:AT2G29050.1); Has 4233 Blast hits to 4233 proteins in 1045 species: Archae - 90; Bacteria - 2317; Metazoa - 471; Fungi - 88; Plants - 178; Viruses - 0; Other Eukaryotes - 1089 (source: NCBI BLink).  protein_id AT3G53780.2p  transcript_id AT3G53780.2  protein_id AT3G53780.2p  transcript_id AT3G53780.2  
At3g53790	chr3:019928478	0.0	W/19928478-19928543,19928632-19928944,19929071-19929208,19929284-19929596,19929701-19929880,19929987-19930050,19930139-19930267	AT3G53790.1  CDS  gene_syn TRF-LIKE 4, TRFL4  gene TRFL4  function Arabidopsis thaliana telomere-binding protein, putative (At3g53790)  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product TRFL4 (TRF-LIKE 4); DNA binding  note TRF-LIKE 4 (TRFL4); FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRFL2 (TRF-LIKE 2); DNA binding (TAIR:AT1G07540.1); Has 158 Blast hits to 154 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 1; Plants - 142; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT3G53790.1p  transcript_id AT3G53790.1  protein_id AT3G53790.1p  transcript_id AT3G53790.1  
At3g53800	chr3:019930942	0.0	W/19930942-19931027,19931354-19931496,19931590-19931640,19931719-19931940,19932021-19932123,19932233-19932719	AT3G53800.1  CDS  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product armadillo/beta-catenin repeat family protein  note armadillo/beta-catenin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein (TAIR:AT3G09350.1); Has 461 Blast hits to 458 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 169; Fungi - 134; Plants - 93; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT3G53800.1p  transcript_id AT3G53800.1  protein_id AT3G53800.1p  transcript_id AT3G53800.1  
At3g53810	chr3:019933153	0.0	C/19933153-19935186	AT3G53810.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product lectin protein kinase, putative  note lectin protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: RLK (receptor lectin kinase); kinase (TAIR:AT2G37710.1); Has 82898 Blast hits to 81826 proteins in 3172 species: Archae - 50; Bacteria - 7522; Metazoa - 35928; Fungi - 6412; Plants - 19172; Viruses - 401; Other Eukaryotes - 13413 (source: NCBI BLink).  protein_id AT3G53810.1p  transcript_id AT3G53810.1  protein_id AT3G53810.1p  transcript_id AT3G53810.1  
At3g53820	chr3:019938706	0.0	W/19938706-19939134	AT3G53820.1  CDS  go_component intracellular|GO:0005622||IEA  go_component mitochondrion|GO:0005739||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: mitochondrion, intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: TAC1 (TELOMERASE ACTIVATOR1); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT3G09290.1); Has 271 Blast hits to 269 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 37; Fungi - 0; Plants - 233; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G53820.1p  transcript_id AT3G53820.1  protein_id AT3G53820.1p  transcript_id AT3G53820.1  
At3g53830	chr3:019940814	0.0	W/19940814-19941018,19941119-19941192,19941299-19941383,19941511-19941609,19941694-19941921,19941977-19942264,19942417-19942460,19942573-19942755,19942853-19942943,19943310-19943353,19943470-19943592	AT3G53830.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function chromatin binding|GO:0003682||ISS  go_function Ran GTPase binding|GO:0008536||ISS  product regulator of chromosome condensation (RCC1) family protein / UVB-resistance protein-related  note regulator of chromosome condensation (RCC1) family protein / UVB-resistance protein-related; FUNCTIONS IN: chromatin binding, Ran GTPase binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: regulator of chromosome condensation (RCC1) family protein (TAIR:AT3G55580.1); Has 13744 Blast hits to 4505 proteins in 298 species: Archae - 54; Bacteria - 1458; Metazoa - 5848; Fungi - 527; Plants - 1255; Viruses - 0; Other Eukaryotes - 4602 (source: NCBI BLink).  protein_id AT3G53830.1p  transcript_id AT3G53830.1  protein_id AT3G53830.1p  transcript_id AT3G53830.1  
At3g53840	chr3:019945571	0.0	W/19945571-19946372,19946458-19946517,19946662-19947719	AT3G53840.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase-related (TAIR:AT5G02070.1); Has 83829 Blast hits to 82945 proteins in 3263 species: Archae - 48; Bacteria - 6869; Metazoa - 37315; Fungi - 6348; Plants - 18718; Viruses - 422; Other Eukaryotes - 14109 (source: NCBI BLink).  protein_id AT3G53840.1p  transcript_id AT3G53840.1  protein_id AT3G53840.1p  transcript_id AT3G53840.1  
At3g53850	chr3:019948864	0.0	C/19948864-19948994,19948560-19948692,19948262-19948462	AT3G53850.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702); BEST Arabidopsis thaliana protein match is: integral membrane protein, putative (TAIR:AT5G02060.1); Has 100 Blast hits to 100 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G53850.1p  transcript_id AT3G53850.1  protein_id AT3G53850.1p  transcript_id AT3G53850.1  
At3g53860	chr3:019950690	0.0	C/19950690-19951270,19949850-19950114	AT3G53860.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31600.1); Has 29 Blast hits to 28 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G53860.1p  transcript_id AT3G53860.1  protein_id AT3G53860.1p  transcript_id AT3G53860.1  
At3g53870	chr3:019951547	0.0	W/19951547-19951576,19951669-19951816,19951892-19952063,19952298-19952484,19952570-19952782	AT3G53870.1  CDS  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function RNA binding|GO:0003723||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_component cytosolic small ribosomal subunit|GO:0022627||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S3 (RPS3B)  note 40S ribosomal protein S3 (RPS3B); FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: response to salt stress, translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, membrane; EXPRESSED IN: root, leaf; CONTAINS InterPro DOMAIN/s: K Homology, prokaryotic type (InterPro:IPR009019), K Homology, type 2 (InterPro:IPR004044), K Homology (InterPro:IPR004087), Ribosomal protein S3, C-terminal (InterPro:IPR001351), Ribosomal protein S3, conserved site (InterPro:IPR018280), Ribosomal protein S3, eukaryotic/archaeal (InterPro:IPR005703); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S3 (RPS3A) (TAIR:AT2G31610.1); Has 3922 Blast hits to 3921 proteins in 1187 species: Archae - 174; Bacteria - 1977; Metazoa - 296; Fungi - 95; Plants - 101; Viruses - 0; Other Eukaryotes - 1279 (source: NCBI BLink).  protein_id AT3G53870.1p  transcript_id AT3G53870.1  protein_id AT3G53870.1p  transcript_id AT3G53870.1  
At3g53880	chr3:019953238	0.0	W/19953238-19953357,19953544-19953594,19953929-19954005,19954116-19954203,19954372-19954647,19954737-19954985,19955085-19955171	AT3G53880.1  CDS  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function oxidoreductase activity|GO:0016491||IEA  product aldo/keto reductase family protein  note aldo/keto reductase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Aldo/keto reductase, conserved site (InterPro:IPR018170); BEST Arabidopsis thaliana protein match is: aldo/keto reductase family protein (TAIR:AT2G37770.2); Has 14387 Blast hits to 14361 proteins in 1377 species: Archae - 174; Bacteria - 7837; Metazoa - 1872; Fungi - 1124; Plants - 971; Viruses - 0; Other Eukaryotes - 2409 (source: NCBI BLink).  protein_id AT3G53880.1p  transcript_id AT3G53880.1  protein_id AT3G53880.1p  transcript_id AT3G53880.1  
At3g53890	chr3:019956000	0.0	C/19956000-19956049,19955753-19955885,19955582-19955647	AT3G53890.1  CDS  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S21 (RPS21B)  note 40S ribosomal protein S21 (RPS21B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S21e (InterPro:IPR001931), Ribosomal protein S21e, conserved site (InterPro:IPR018279); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT5G27700.1); Has 478 Blast hits to 478 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 224; Fungi - 90; Plants - 74; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT3G53890.1p  transcript_id AT3G53890.1  protein_id AT3G53890.1p  transcript_id AT3G53890.1  
At3g53890	chr3:019956000	0.0	C/19956000-19956049,19955753-19955885,19955582-19955647	AT3G53890.2  CDS  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S21 (RPS21B)  note 40S ribosomal protein S21 (RPS21B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S21e (InterPro:IPR001931), Ribosomal protein S21e, conserved site (InterPro:IPR018279); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT5G27700.1); Has 478 Blast hits to 478 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 224; Fungi - 90; Plants - 74; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT3G53890.2p  transcript_id AT3G53890.2  protein_id AT3G53890.2p  transcript_id AT3G53890.2  
At3g53900	chr3:019958655	0.0	C/19958655-19958699,19958489-19958567,19958200-19958258,19958032-19958109,19957860-19957941,19957704-19957752,19957566-19957627,19957335-19957402,19957207-19957262,19957065-19957112,19956914-19956983	AT3G53900.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process uracil salvage|GO:0006223||IEA  go_process nucleoside metabolic process|GO:0009116||IEA  go_function uracil phosphoribosyltransferase activity|GO:0004845||IEA  go_process nucleoside metabolic process|GO:0009116||ISS  go_function uracil phosphoribosyltransferase activity|GO:0004845||ISS  product uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative  note uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative; FUNCTIONS IN: uracil phosphoribosyltransferase activity; INVOLVED IN: uracil salvage, nucleoside metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836), Uracil phosphoribosyl transferase (InterPro:IPR005765); BEST Arabidopsis thaliana protein match is: AtUK/UPRT1 (Uridine kinase/Uracil phosphoribosyltransferase 1); ATP binding / kinase/ uracil phosphoribosyltransferase/ uridine kinase (TAIR:AT5G40870.1); Has 3809 Blast hits to 3809 proteins in 1278 species: Archae - 118; Bacteria - 2275; Metazoa - 197; Fungi - 227; Plants - 120; Viruses - 0; Other Eukaryotes - 872 (source: NCBI BLink).  protein_id AT3G53900.1p  transcript_id AT3G53900.1  protein_id AT3G53900.1p  transcript_id AT3G53900.1  
At3g53900	chr3:019958869	0.0	C/19958869-19959006,19958655-19958756,19958489-19958567,19958200-19958258,19958032-19958109,19957860-19957941,19957704-19957752,19957566-19957627,19957335-19957402,19957207-19957262,19957065-19957112,19956914-19956983	AT3G53900.2  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process uracil salvage|GO:0006223||IEA  go_process nucleoside metabolic process|GO:0009116||IEA  go_function uracil phosphoribosyltransferase activity|GO:0004845||IEA  go_process nucleoside metabolic process|GO:0009116||ISS  go_function uracil phosphoribosyltransferase activity|GO:0004845||ISS  product uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative  note uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative; FUNCTIONS IN: uracil phosphoribosyltransferase activity; INVOLVED IN: uracil salvage, nucleoside metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836), Uracil phosphoribosyl transferase (InterPro:IPR005765); BEST Arabidopsis thaliana protein match is: AtUK/UPRT1 (Uridine kinase/Uracil phosphoribosyltransferase 1); ATP binding / kinase/ uracil phosphoribosyltransferase/ uridine kinase (TAIR:AT5G40870.1); Has 3809 Blast hits to 3809 proteins in 1278 species: Archae - 118; Bacteria - 2275; Metazoa - 197; Fungi - 227; Plants - 120; Viruses - 0; Other Eukaryotes - 872 (source: NCBI BLink).  protein_id AT3G53900.2p  transcript_id AT3G53900.2  protein_id AT3G53900.2p  transcript_id AT3G53900.2  
At3g53910	chr3:019960425	0.0	C/19960425-19960446,19959965-19960224,19959856-19959900	AT3G53910.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process malate metabolic process|GO:0006108||IEA  go_function catalytic activity|GO:0003824||IEA  go_function L-malate dehydrogenase activity|GO:0030060||IEA  product malate dehydrogenase-related  note malate dehydrogenase-related; FUNCTIONS IN: L-malate dehydrogenase activity, catalytic activity; INVOLVED IN: malate metabolic process, carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Malate dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria (InterPro:IPR010097), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: MDH (MALATE DEHYDROGENASE); L-malate dehydrogenase/ binding / catalytic/ malate dehydrogenase/ oxidoreductase/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor (TAIR:AT3G47520.1); Has 466 Blast hits to 466 proteins in 114 species: Archae - 0; Bacteria - 56; Metazoa - 187; Fungi - 2; Plants - 208; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT3G53910.1p  transcript_id AT3G53910.1  protein_id AT3G53910.1p  transcript_id AT3G53910.1  
At3g53920	chr3:019963785	0.0	C/19963785-19963820,19963583-19963684,19963416-19963494,19963058-19963224,19962500-19962973,19962181-19962411,19961840-19961980,19961542-19961745,19961041-19961322	AT3G53920.1  CDS  gene_syn RNA POLYMERASE SIGMA-SUBUNIT, RNA POLYMERASE SIGMA-SUBUNIT C, SIG3, SIGC, SIGMA FACTOR 3  gene SIGC  function Encodes a sigma-like transcription factor, Sigma 3 (SIG3 or SIGC). As a subunit of chloroplast RNA polymerase, SIG3 confers the ability to recognize promoter sequences on the core enzyme. SIG3 transcribes specifically the psbN gene in plastids.  go_component chloroplast|GO:0009507|9405719|IDA  go_process transcription initiation|GO:0006352|9280303|TAS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process photosynthesis, dark reaction|GO:0019685||NAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899|17175536|IMP  go_function DNA-directed RNA polymerase activity|GO:0003899|9280303|ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  go_function sigma factor activity|GO:0016987|9280303|ISS  product SIGC (RNA POLYMERASE SIGMA-SUBUNIT C); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor  note RNA POLYMERASE SIGMA-SUBUNIT C (SIGC); FUNCTIONS IN: DNA-directed RNA polymerase activity, transcription factor activity, sigma factor activity, DNA binding; INVOLVED IN: photosynthesis, dark reaction, regulation of transcription, DNA-dependent, transcription initiation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor, region 2 (InterPro:IPR013325), Winged helix repressor DNA-binding (InterPro:IPR011991), RNA polymerase sigma-70 region 3 (InterPro:IPR007624), RNA polymerase sigma-70 (InterPro:IPR014284), RNA polymerase sigma factor, regions 3 and 4 (InterPro:IPR013324), RNA polymerase sigma factor, SigB/SigC/SigD, plastid (InterPro:IPR016262), RNA polymerase sigma-70 region 2 (InterPro:IPR007627), RNA polymerase sigma-70 region 4 (InterPro:IPR007630), RNA polymerase sigma-70 factor (InterPro:IPR000943); BEST Arabidopsis thaliana protein match is: SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor (TAIR:AT1G08540.1); Has 15530 Blast hits to 15526 proteins in 1566 species: Archae - 0; Bacteria - 9365; Metazoa - 0; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 5992 (source: NCBI BLink).  protein_id AT3G53920.1p  transcript_id AT3G53920.1  protein_id AT3G53920.1p  transcript_id AT3G53920.1  
At3g53930	chr3:019966541	0.0	W/19966541-19966801,19967148-19967265,19967360-19967418,19967659-19967723,19967908-19968001,19968079-19968159,19968257-19968365,19968650-19968722,19968798-19969168,19969265-19969629,19969720-19969966,19970075-19970145,19970356-19970580	AT3G53930.2  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G37840.1); Has 98078 Blast hits to 96052 proteins in 3237 species: Archae - 59; Bacteria - 8644; Metazoa - 42760; Fungi - 8819; Plants - 18865; Viruses - 502; Other Eukaryotes - 18429 (source: NCBI BLink).  protein_id AT3G53930.2p  transcript_id AT3G53930.2  protein_id AT3G53930.2p  transcript_id AT3G53930.2  
At3g53930	chr3:019966541	0.0	W/19966541-19966801,19967148-19967265,19967360-19967418,19967659-19967723,19967908-19968001,19968079-19968159,19968257-19968365,19968650-19968722,19968798-19969168,19969268-19969629,19969720-19969966,19970075-19970145,19970356-19970580	AT3G53930.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G37840.1); Has 98103 Blast hits to 96076 proteins in 3237 species: Archae - 59; Bacteria - 8644; Metazoa - 42773; Fungi - 8821; Plants - 18871; Viruses - 502; Other Eukaryotes - 18433 (source: NCBI BLink).  protein_id AT3G53930.1p  transcript_id AT3G53930.1  protein_id AT3G53930.1p  transcript_id AT3G53930.1  
At3g53940	chr3:019973271	0.0	C/19973271-19973564,19972932-19973108,19972704-19972853,19972509-19972610,19971777-19971847,19971595-19971662,19971258-19971493	AT3G53940.1  CDS  go_component mitochondrial inner membrane|GO:0005743||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function transporter activity|GO:0005215||ISS  go_function binding|GO:0005488||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: transporter activity, binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: mitochondrial substrate carrier family protein (TAIR:AT2G37890.1); Has 22773 Blast hits to 10507 proteins in 363 species: Archae - 0; Bacteria - 0; Metazoa - 11593; Fungi - 6281; Plants - 2717; Viruses - 2; Other Eukaryotes - 2180 (source: NCBI BLink).  protein_id AT3G53940.1p  transcript_id AT3G53940.1  protein_id AT3G53940.1p  transcript_id AT3G53940.1  
At3g53950	chr3:019975704	0.0	W/19975704-19977341	AT3G53950.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glyoxal oxidase-related  note glyoxal oxidase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Galactose oxidase, beta-propeller (InterPro:IPR015916), Immunoglobulin E-set (InterPro:IPR014756), Glyoxal oxidase, N-terminal (InterPro:IPR009880), Region of unknown function DUF1929 (InterPro:IPR015202); BEST Arabidopsis thaliana protein match is: glyoxal oxidase-related (TAIR:AT1G75620.1); Has 569 Blast hits to 562 proteins in 113 species: Archae - 0; Bacteria - 232; Metazoa - 1; Fungi - 172; Plants - 153; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT3G53950.1p  transcript_id AT3G53950.1  protein_id AT3G53950.1p  transcript_id AT3G53950.1  
At3g53960	chr3:019980742	0.0	C/19980742-19980886,19980411-19980628,19979470-19980014,19978306-19979206	AT3G53960.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process oligopeptide transport|GO:0006857||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region, conserved site (InterPro:IPR018456), TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT2G37900.1); Has 3547 Blast hits to 3464 proteins in 645 species: Archae - 0; Bacteria - 1265; Metazoa - 445; Fungi - 278; Plants - 1143; Viruses - 0; Other Eukaryotes - 416 (source: NCBI BLink).  protein_id AT3G53960.1p  transcript_id AT3G53960.1  protein_id AT3G53960.1p  transcript_id AT3G53960.1  
At3g53965	chr3:019984941	0.0	W/19984941-19985011	AT3G53965.1  tRNA  gene_syn 67287.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: GCC)  transcript_id AT3G53965.1  
At3g53970	chr3:019985208	0.0	W/19985208-19985382,19985466-19985637,19985716-19985862,19986230-19986304,19986389-19986469,19986562-19986593,19986686-19986758,19986880-19986960,19987060-19987132	AT3G53970.1  CDS  go_function molecular_function|GO:0003674||ND  product proteasome inhibitor-related  note proteasome inhibitor-related; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PI31 proteasome regulator (InterPro:IPR013886); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48530.1); Has 3642 Blast hits to 2517 proteins in 204 species: Archae - 2; Bacteria - 191; Metazoa - 2796; Fungi - 315; Plants - 64; Viruses - 13; Other Eukaryotes - 261 (source: NCBI BLink).  protein_id AT3G53970.1p  transcript_id AT3G53970.1  protein_id AT3G53970.1p  transcript_id AT3G53970.1  
At3g53970	chr3:019985208	0.0	W/19985208-19985382,19985466-19985637,19985716-19985862,19986230-19986304,19986389-19986469,19986562-19986593,19986686-19986762	AT3G53970.2  CDS  go_function molecular_function|GO:0003674||ND  product proteasome inhibitor-related  note proteasome inhibitor-related; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PI31 proteasome regulator (InterPro:IPR013886); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48530.1); Has 104 Blast hits to 104 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 73; Fungi - 12; Plants - 18; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G53970.2p  transcript_id AT3G53970.2  protein_id AT3G53970.2p  transcript_id AT3G53970.2  
At3g53980	chr3:019987876	0.0	C/19987876-19988203,19987760-19987776	AT3G53980.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT5G05960.1); Has 89 Blast hits to 89 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G53980.1p  transcript_id AT3G53980.1  protein_id AT3G53980.1p  transcript_id AT3G53980.1  
At3g53980	chr3:019987876	0.0	C/19987876-19988203,19987760-19987776	AT3G53980.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT5G05960.1); Has 89 Blast hits to 89 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G53980.2p  transcript_id AT3G53980.2  protein_id AT3G53980.2p  transcript_id AT3G53980.2  
At3g53990	chr3:019990845	0.0	C/19990845-19991019,19990558-19990763	AT3G53990.2  CDS  go_component cellular_component|GO:0005575||ND  go_process response to stress|GO:0006950||ISS  go_process response to cold|GO:0009409|14535880|IEP  go_function molecular_function|GO:0003674||ND  product universal stress protein (USP) family protein  note universal stress protein (USP) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cold, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729); BEST Arabidopsis thaliana protein match is: universal stress protein (USP) family protein / early nodulin ENOD18 family protein (TAIR:AT3G03270.2); Has 126 Blast hits to 126 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 126; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G53990.2p  transcript_id AT3G53990.2  protein_id AT3G53990.2p  transcript_id AT3G53990.2  
At3g53990	chr3:019990845	0.0	C/19990845-19991019,19990654-19990763,19990449-19990567,19989658-19989736	AT3G53990.1  CDS  go_component cellular_component|GO:0005575||ND  go_process response to stress|GO:0006950||ISS  go_process response to cold|GO:0009409|14535880|IEP  go_function molecular_function|GO:0003674||ND  product universal stress protein (USP) family protein  note universal stress protein (USP) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cold, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: universal stress protein (USP) family protein / early nodulin ENOD18 family protein (TAIR:AT3G03270.2); Has 2509 Blast hits to 2475 proteins in 563 species: Archae - 245; Bacteria - 1658; Metazoa - 47; Fungi - 64; Plants - 395; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).  protein_id AT3G53990.1p  transcript_id AT3G53990.1  protein_id AT3G53990.1p  transcript_id AT3G53990.1  
At3g54000	chr3:019996757	0.0	W/19996757-19997065,19997164-19997442,19997541-19997805,19997895-19997984,19998082-19998197	AT3G54000.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP022260 (InterPro:IPR016802); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59050.1); Has 43 Blast hits to 43 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G54000.1p  transcript_id AT3G54000.1  protein_id AT3G54000.1p  transcript_id AT3G54000.1  
At3g54000	chr3:019996757	0.0	W/19996757-19997065,19997164-19997442,19997541-19997858	AT3G54000.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; Has 30 Blast hits to 30 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G54000.2p  transcript_id AT3G54000.2  protein_id AT3G54000.2p  transcript_id AT3G54000.2  
At3g54000	chr3:019996757	0.0	W/19996757-19997065,19997164-19997442,19997541-19997858	AT3G54000.3  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; Has 30 Blast hits to 30 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G54000.3p  transcript_id AT3G54000.3  protein_id AT3G54000.3p  transcript_id AT3G54000.3  
At3g54010	chr3:020001042	0.0	W/20001042-20001115,20001229-20001313,20001384-20001453,20001547-20001644,20001854-20001976,20002091-20002123,20002229-20002287,20002400-20002481,20002577-20002735,20002832-20002889,20003050-20003198,20003308-20003405,20003499-20003568,20003650-20003709,20003870-20003926,20004004-20004072,20004186-20004263,20004357-20004458,20004545-20004616,20004752-20005063	AT3G54010.1  CDS  gene_syn DEI1, PAS1, PASTICCINO 1  gene PAS1  function Immunophilin-like protein similar to the p59 FK506-binding protein (FKBP52). Shows rotamase activity and contains an FKBP-like domain and three tetratricopeptide repeat units. Members of this class of mutation show ectopic cell proliferation in cotyledons. Gene may be alternatively spliced.  go_function binding|GO:0005488||IEA  go_component nucleus|GO:0005634|9566922|ISS  go_process response to cytokinin stimulus|GO:0009735|9449673|IMP  go_process embryonic development|GO:0009790|9449673|IMP  go_process unidimensional cell growth|GO:0009826|9449673|IMP  go_process cell differentiation|GO:0030154|9449673|IMP  go_process root development|GO:0048364|9449673|IMP  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  go_function FK506 binding|GO:0005528||ISS  product PAS1 (PASTICCINO 1); FK506 binding / binding / peptidyl-prolyl cis-trans isomerase  note PASTICCINO 1 (PAS1); FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity, binding; INVOLVED IN: embryonic development, cell differentiation, root development, response to cytokinin stimulus, unidimensional cell growth; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026), Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative (TAIR:AT5G48570.1); Has 5272 Blast hits to 4419 proteins in 381 species: Archae - 23; Bacteria - 308; Metazoa - 2833; Fungi - 504; Plants - 585; Viruses - 0; Other Eukaryotes - 1019 (source: NCBI BLink).  protein_id AT3G54010.1p  transcript_id AT3G54010.1  protein_id AT3G54010.1p  transcript_id AT3G54010.1  
At3g54010	chr3:020001588	0.0	W/20001588-20001644,20001854-20001976,20002091-20002123,20002229-20002287,20002400-20002481,20002577-20002735,20002832-20002889,20003050-20003198,20003308-20003405,20003499-20003568,20003650-20003709,20003870-20003926,20004004-20004072,20004186-20004263,20004357-20004458,20004545-20004616,20004752-20005063	AT3G54010.2  CDS  gene_syn DEI1, PAS1, PASTICCINO 1  gene PAS1  function Immunophilin-like protein similar to the p59 FK506-binding protein (FKBP52). Shows rotamase activity and contains an FKBP-like domain and three tetratricopeptide repeat units. Members of this class of mutation show ectopic cell proliferation in cotyledons. Gene may be alternatively spliced.  go_function binding|GO:0005488||IEA  go_component nucleus|GO:0005634|9566922|ISS  go_process response to cytokinin stimulus|GO:0009735|9449673|IMP  go_process embryonic development|GO:0009790|9449673|IMP  go_process unidimensional cell growth|GO:0009826|9449673|IMP  go_process cell differentiation|GO:0030154|9449673|IMP  go_process root development|GO:0048364|9449673|IMP  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  go_function FK506 binding|GO:0005528||ISS  product PAS1 (PASTICCINO 1); FK506 binding / binding / peptidyl-prolyl cis-trans isomerase  note PASTICCINO 1 (PAS1); FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity, binding; INVOLVED IN: embryonic development, cell differentiation, root development, response to cytokinin stimulus, unidimensional cell growth; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026), Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: ROF1 (ROTAMASE FKBP 1); FK506 binding / calmodulin binding / peptidyl-prolyl cis-trans isomerase (TAIR:AT3G25230.2); Has 4735 Blast hits to 4192 proteins in 349 species: Archae - 23; Bacteria - 226; Metazoa - 2491; Fungi - 461; Plants - 645; Viruses - 0; Other Eukaryotes - 889 (source: NCBI BLink).  protein_id AT3G54010.2p  transcript_id AT3G54010.2  protein_id AT3G54010.2p  transcript_id AT3G54010.2  
At3g54020	chr3:020006098	0.0	W/20006098-20006130,20006220-20006309,20006553-20006639,20006731-20006799,20006884-20006964,20007051-20007122,20007208-20007268,20007359-20007461,20007536-20007678,20007752-20007858,20007949-20008020	AT3G54020.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product phosphatidic acid phosphatase-related / PAP2-related  note phosphatidic acid phosphatase-related / PAP2-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37940.1); Has 326 Blast hits to 326 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 217; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT3G54020.1p  transcript_id AT3G54020.1  protein_id AT3G54020.1p  transcript_id AT3G54020.1  
At3g54030	chr3:020011162	0.0	W/20011162-20011246,20011327-20011535,20011631-20011766,20011887-20012020,20012110-20012215,20012320-20012405,20012554-20012910,20013001-20013114,20013245-20013490	AT3G54030.1  CDS  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function binding|GO:0005488||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein tyrosine kinase activity, binding, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase-related (TAIR:AT5G59010.1); Has 20805 Blast hits to 20441 proteins in 833 species: Archae - 4; Bacteria - 1199; Metazoa - 6064; Fungi - 164; Plants - 12136; Viruses - 94; Other Eukaryotes - 1144 (source: NCBI BLink).  protein_id AT3G54030.1p  transcript_id AT3G54030.1  protein_id AT3G54030.1p  transcript_id AT3G54030.1  
At3g54040	chr3:020015233	0.0	C/20015233-20015299,20014685-20015005,20014032-20014195	AT3G54040.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product photoassimilate-responsive protein-related  note photoassimilate-responsive protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: PAR1 (InterPro:IPR009489); BEST Arabidopsis thaliana protein match is: photoassimilate-responsive protein, putative (TAIR:AT5G52390.1); Has 27 Blast hits to 27 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G54040.1p  transcript_id AT3G54040.1  protein_id AT3G54040.1p  transcript_id AT3G54040.1  
At3g54050	chr3:020016951	0.0	W/20016951-20017397,20017523-20017750,20017846-20018352,20018456-20018527	AT3G54050.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function phosphoric ester hydrolase activity|GO:0042578||IEA  go_component stromule|GO:0010319|16923014|IDA  go_process fructose metabolic process|GO:0006000||ISS  go_process response to cold|GO:0009409|16923014|IEP  go_function fructose 1,6-bisphosphate 1-phosphatase activity|GO:0042132||ISS  product fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative  note fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative; FUNCTIONS IN: fructose 1,6-bisphosphate 1-phosphatase activity, phosphoric ester hydrolase activity; INVOLVED IN: response to cold, fructose metabolic process; LOCATED IN: apoplast, stromule, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Inositol monophosphatase/Fructose-1,6-bisphosphatase (InterPro:IPR017955), Fructose-1,6-bisphosphatase (InterPro:IPR000146); BEST Arabidopsis thaliana protein match is: fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative (TAIR:AT1G43670.1); Has 2353 Blast hits to 2350 proteins in 800 species: Archae - 24; Bacteria - 1225; Metazoa - 332; Fungi - 108; Plants - 224; Viruses - 0; Other Eukaryotes - 440 (source: NCBI BLink).  protein_id AT3G54050.1p  transcript_id AT3G54050.1  protein_id AT3G54050.1p  transcript_id AT3G54050.1  
At3g54060	chr3:020020653	0.0	C/20020653-20020826,20020322-20020556,20019958-20020140,20019248-20019875,20019076-20019160,20018902-20018925	AT3G54060.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37960.2); Has 370 Blast hits to 266 proteins in 69 species: Archae - 0; Bacteria - 111; Metazoa - 103; Fungi - 60; Plants - 14; Viruses - 2; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT3G54060.2p  transcript_id AT3G54060.2  protein_id AT3G54060.2p  transcript_id AT3G54060.2  
At3g54060	chr3:020020653	0.0	C/20020653-20020826,20020322-20020556,20019958-20020140,20019248-20019875,20019076-20019160,20018915-20018980	AT3G54060.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37960.2); Has 390 Blast hits to 273 proteins in 70 species: Archae - 0; Bacteria - 122; Metazoa - 106; Fungi - 64; Plants - 14; Viruses - 2; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT3G54060.1p  transcript_id AT3G54060.1  protein_id AT3G54060.1p  transcript_id AT3G54060.1  
At3g54070	chr3:020023471	0.0	C/20023471-20023603,20022901-20023368,20022642-20022809,20022104-20022417,20021330-20021971	AT3G54070.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35810.1); Has 8683 Blast hits to 4877 proteins in 256 species: Archae - 15; Bacteria - 482; Metazoa - 4947; Fungi - 391; Plants - 733; Viruses - 31; Other Eukaryotes - 2084 (source: NCBI BLink).  protein_id AT3G54070.1p  transcript_id AT3G54070.1  protein_id AT3G54070.1p  transcript_id AT3G54070.1  
At3g54080	chr3:020025397	0.0	W/20025397-20026449	AT3G54080.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function sugar binding|GO:0005529||IEA  go_process biological_process|GO:0008150||ND  product sugar binding  note sugar binding; FUNCTIONS IN: sugar binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: legume lectin family protein (TAIR:AT5G01090.1); Has 83 Blast hits to 83 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G54080.1p  transcript_id AT3G54080.1  protein_id AT3G54080.1p  transcript_id AT3G54080.1  
At3g54085	chr3:020026780	0.0	C/20026780-20027016	AT3G54085.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Yos1-like (InterPro:IPR013880); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37975.1); Has 139 Blast hits to 139 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 16; Plants - 26; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT3G54085.1p  transcript_id AT3G54085.1  protein_id AT3G54085.1p  transcript_id AT3G54085.1  
At3g54085	chr3:020026780	0.0	C/20026780-20027016	AT3G54085.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Yos1-like (InterPro:IPR013880); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37975.1).  protein_id AT3G54085.2p  transcript_id AT3G54085.2  protein_id AT3G54085.2p  transcript_id AT3G54085.2  
At3g54090	chr3:020028145	0.0	W/20028145-20028867,20029143-20029835	AT3G54090.1  CDS  go_component nucleoid|GO:0009295|16326926|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process sucrose biosynthetic process|GO:0005986||IEA  go_process sucrose catabolic process, using beta-fructofuranosidase|GO:0019575||IEA  go_process acetate fermentation|GO:0019654||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_function kinase activity|GO:0016301||ISS  product pfkB-type carbohydrate kinase family protein  note pfkB-type carbohydrate kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase; LOCATED IN: nucleus, chloroplast, nucleoid, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: kinase (TAIR:AT1G69200.1); Has 2702 Blast hits to 2702 proteins in 696 species: Archae - 59; Bacteria - 1976; Metazoa - 4; Fungi - 2; Plants - 163; Viruses - 0; Other Eukaryotes - 498 (source: NCBI BLink).  protein_id AT3G54090.1p  transcript_id AT3G54090.1  protein_id AT3G54090.1p  transcript_id AT3G54090.1  
At3g54100	chr3:020037299	0.0	C/20037299-20037874,20036308-20036380,20036148-20036218,20035957-20036045,20035727-20035859,20035369-20035601,20034810-20035286,20034451-20034715	AT3G54100.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37980.1); Has 434 Blast hits to 424 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 434; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G54100.1p  transcript_id AT3G54100.1  protein_id AT3G54100.1p  transcript_id AT3G54100.1  
At3g54110	chr3:020038890	0.0	W/20038890-20038967,20039518-20039733,20039834-20039912,20040006-20040139,20040222-20040320,20040412-20040516,20040600-20040677,20040761-20040847,20040952-20040996	AT3G54110.1  CDS  gene_syn ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ATPUMP1, ATUCP1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, PUMP1, UCP, UCP1, UNCOUPLING PROTEIN 1  gene PUMP1  function Member of Uncoupling protein PUMP2 family. Encodes a mitochondrial uncoupling protein AtUCP1 involved in maintain the redox poise of the mitochondrial electron transport chain to facilitate photosynthetic metabolism. Disruption of UCP1 results in a photosynthetic phenotype. Specifically there is a restriction in photorespiration with a decrease in the rate of oxidation of photorespiratory glycine in the mitochondrion. This change leads to an associated reduced photosynthetic carbon assimilation rate.  go_component mitochondrion|GO:0005739|15276431|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial inner membrane|GO:0005743|17148605|IDA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process photorespiration|GO:0009853|17148605|IMP  go_process photosynthesis|GO:0015979|17148605|IMP  go_function binding|GO:0005488||ISS  go_function oxidative phosphorylation uncoupler activity|GO:0017077|17148605|IDA  go_function oxidative phosphorylation uncoupler activity|GO:0017077||ISS  product PUMP1 (PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1); binding / oxidative phosphorylation uncoupler  note PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1 (PUMP1); FUNCTIONS IN: oxidative phosphorylation uncoupler activity, binding; INVOLVED IN: transport, photosynthesis, photorespiration; LOCATED IN: mitochondrion, mitochondrial inner membrane, plasma membrane, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial brown fat uncoupling protein (InterPro:IPR002030), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: ATUCP2 (UNCOUPLING PROTEIN 2); oxidative phosphorylation uncoupler (TAIR:AT5G58970.1); Has 19047 Blast hits to 9666 proteins in 359 species: Archae - 0; Bacteria - 0; Metazoa - 9597; Fungi - 5127; Plants - 2695; Viruses - 3; Other Eukaryotes - 1625 (source: NCBI BLink).  protein_id AT3G54110.1p  transcript_id AT3G54110.1  protein_id AT3G54110.1p  transcript_id AT3G54110.1  
At3g54120	chr3:020042064	0.0	C/20042064-20042133,20041781-20041961,20041505-20041716,20041269-20041417	AT3G54120.1  CDS  go_component endoplasmic reticulum|GO:0005783||IEA  go_component endoplasmic reticulum|GO:0005783||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product reticulon family protein (RTNLB12)  note reticulon family protein (RTNLB12); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: BTI3 (VIRB2-INTERACTING PROTEIN 3) (TAIR:AT5G41600.1); Has 442 Blast hits to 442 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 180; Fungi - 0; Plants - 252; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT3G54120.1p  transcript_id AT3G54120.1  protein_id AT3G54120.1p  transcript_id AT3G54120.1  
At3g54130	chr3:020044175	0.0	C/20044175-20044429,20042895-20043482	AT3G54130.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product josephin family protein  note josephin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Machado-Joseph disease protein MJD (InterPro:IPR006155), Ubiquitin interacting motif (InterPro:IPR003903); BEST Arabidopsis thaliana protein match is: JOSL (JOSEPHIN-LIKE PROTEIN) (TAIR:AT2G29640.1); Has 303 Blast hits to 301 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 212; Fungi - 12; Plants - 35; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT3G54130.1p  transcript_id AT3G54130.1  protein_id AT3G54130.1p  transcript_id AT3G54130.1  
At3g54140	chr3:020048049	0.0	C/20048049-20048154,20047438-20047655,20046800-20047353,20045885-20046719	AT3G54140.1  CDS  gene_syn ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, ATPTR1, PEPTIDE TRANSPORTER 1, PTR1  gene PTR1  function Encodes a di- and tri-peptide transporter that recognizes a variety of different amino acid combinations. GFP-tagged PTR1 localizes to the plasma membrane and has 8 to 11 predicted transmembrane domains. PTR1 is expressed in a number of different vascular tissues throughout the plant based on promoter:GUS expression analysis. ptr1 mutants have a lower dry weight than wild type plants when both are grown with Pro-Ala or Ala-Ala dipeptides as their nitrogen source, suggesting that PTR1 plays a role in dipeptide uptake in the roots. Furthermore N content of ptr1 mutants is lower than that of wild type plants when grown with Pro-Ala or a mixture of dipeptides as nitrogen source  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component plasma membrane|GO:0005886|15500465|IDA  go_component membrane|GO:0016020||ISS  go_process nitrogen compound metabolic process|GO:0006807|18753286|IMP  go_process oligopeptide transport|GO:0006857||ISS  go_process dipeptide transport|GO:0042938|15500465|IDA  go_process tripeptide transport|GO:0042939|15500465|IDA  go_function transporter activity|GO:0005215||ISS  go_function dipeptide transporter activity|GO:0042936|15500465|IDA  go_function dipeptide transporter activity|GO:0042936|15500465|IGI  go_function tripeptide transporter activity|GO:0042937|15500465|IDA  product PTR1 (PEPTIDE TRANSPORTER 1); dipeptide transporter/ transporter/ tripeptide transporter  note PEPTIDE TRANSPORTER 1 (PTR1); FUNCTIONS IN: dipeptide transporter activity, tripeptide transporter activity, transporter activity; INVOLVED IN: dipeptide transport, oligopeptide transport, nitrogen compound metabolic process, tripeptide transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 40 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region, conserved site (InterPro:IPR018456), TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: PTR5 (PEPTIDE TRANSPORTER 5); dipeptide transporter/ transporter (TAIR:AT5G01180.1); Has 4947 Blast hits to 4594 proteins in 809 species: Archae - 0; Bacteria - 2163; Metazoa - 708; Fungi - 320; Plants - 1143; Viruses - 0; Other Eukaryotes - 613 (source: NCBI BLink).  protein_id AT3G54140.1p  transcript_id AT3G54140.1  protein_id AT3G54140.1p  transcript_id AT3G54140.1  
At3g54150	chr3:020052593	0.0	C/20052593-20052742,20051142-20051768,20050802-20050996	AT3G54150.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  product embryo-abundant protein-related  note embryo-abundant protein-related; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: embryo-abundant protein-related (TAIR:AT1G55450.1); Has 627 Blast hits to 623 proteins in 230 species: Archae - 4; Bacteria - 322; Metazoa - 59; Fungi - 83; Plants - 109; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT3G54150.1p  transcript_id AT3G54150.1  protein_id AT3G54150.1p  transcript_id AT3G54150.1  
At3g54160	chr3:020053468	0.0	W/20053468-20054319,20054494-20054634,20054716-20055027	AT3G54160.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product syntaxin-related family protein  note syntaxin-related family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G62430.1); Has 634 Blast hits to 617 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 634; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G54160.1p  transcript_id AT3G54160.1  protein_id AT3G54160.1p  transcript_id AT3G54160.1  
At3g54170	chr3:020056848	0.0	W/20056848-20056917,20057002-20057110,20057194-20057230,20057330-20057417,20057517-20057581,20057672-20057749,20057870-20057917,20058295-20058348,20058623-20058784,20058930-20058999,20059083-20059138,20059241-20059396	AT3G54170.1  CDS  gene_syn ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37, ATFIP37, FIP37, FKBP12 INTERACTING PROTEIN 37  gene ATFIP37  function Encodes protein that binds FKBP12. This interaction is disrupted by FK506 but not by cyclosporin A.  go_component cellular_component|GO:0005575||ND  go_function protein binding|GO:0005515|9807817|IPI  product ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37); protein binding  note ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37 (ATFIP37); FUNCTIONS IN: protein binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; Has 17429 Blast hits to 10520 proteins in 712 species: Archae - 243; Bacteria - 1250; Metazoa - 9486; Fungi - 1162; Plants - 554; Viruses - 48; Other Eukaryotes - 4686 (source: NCBI BLink).  protein_id AT3G54170.1p  transcript_id AT3G54170.1  protein_id AT3G54170.1p  transcript_id AT3G54170.1  
At3g54180	chr3:020059882	0.0	W/20059882-20060509,20060604-20060673,20060877-20061015,20061158-20061250	AT3G54180.1  CDS  gene_syn CDC2-LIKE GENE, CDC2B, CDKB1;1, CYCLIN-DEPENDENT KINASE B1;1, P34(CDC2)-LIKE PROTEIN  gene CDKB1;1  function Arabidopsis homolog of yeast cdc2, a protein kinase (cyclin-dependent kinase) that plays a central role in control of the mitotic cell cycle.  go_component cellular_component|GO:0005575||ND  go_process unidimensional cell growth|GO:0009826|10521519|IMP  go_process stomatal complex formation|GO:0010376|15031414|IEP  go_process stomatal complex formation|GO:0010376|16949857|TAS  go_process DNA endoreduplication|GO:0042023|15863515|TAS  go_process cotyledon development|GO:0048825|10521519|IEP  go_function cyclin-dependent protein kinase activity|GO:0004693|1618302|ISS  go_function protein binding|GO:0005515|17426018|IPI  go_function kinase activity|GO:0016301||ISS  product CDKB1;1 (CYCLIN-DEPENDENT KINASE B1;1); cyclin-dependent protein kinase/ kinase/ protein binding  note CYCLIN-DEPENDENT KINASE B1;1 (CDKB1;1); FUNCTIONS IN: protein binding, kinase activity, cyclin-dependent protein kinase activity; INVOLVED IN: DNA endoreduplication, cotyledon development, stomatal complex formation, unidimensional cell growth; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CDKB1;2 (cyclin-dependent kinase B1;2); cyclin binding / kinase/ protein serine/threonine kinase (TAIR:AT2G38620.2); Has 74347 Blast hits to 73471 proteins in 1903 species: Archae - 41; Bacteria - 5523; Metazoa - 33187; Fungi - 7717; Plants - 12101; Viruses - 388; Other Eukaryotes - 15390 (source: NCBI BLink).  protein_id AT3G54180.1p  transcript_id AT3G54180.1  protein_id AT3G54180.1p  transcript_id AT3G54180.1  
At3g54190	chr3:020063689	0.0	C/20063689-20063880,20063409-20063556,20063181-20063331,20062965-20063090,20062806-20062886,20062463-20062655,20062101-20062371,20061759-20062000	AT3G54190.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38630.1); Has 77 Blast hits to 77 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT3G54190.1p  transcript_id AT3G54190.1  protein_id AT3G54190.1p  transcript_id AT3G54190.1  
At3g54200	chr3:020065731	0.0	W/20065731-20066438	AT3G54200.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05975.1); Has 405 Blast hits to 404 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 405; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G54200.1p  transcript_id AT3G54200.1  protein_id AT3G54200.1p  transcript_id AT3G54200.1  
At3g54210	chr3:020068160	0.0	C/20068160-20068385,20067672-20068081	AT3G54210.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  product ribosomal protein L17 family protein  note ribosomal protein L17 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L17 (InterPro:IPR000456); BEST Arabidopsis thaliana protein match is: ribosomal protein L17 family protein (TAIR:AT5G09770.1); Has 5385 Blast hits to 5385 proteins in 1530 species: Archae - 0; Bacteria - 3017; Metazoa - 102; Fungi - 83; Plants - 73; Viruses - 0; Other Eukaryotes - 2110 (source: NCBI BLink).  protein_id AT3G54210.1p  transcript_id AT3G54210.1  protein_id AT3G54210.1p  transcript_id AT3G54210.1  
At3g54220	chr3:020070550	0.0	W/20070550-20072081,20072196-20072625	AT3G54220.1  CDS  gene_syn SCARECROW, SCR, SGR1, SHOOT GRAVITROPISM 1  gene SCR  function Encodes a member of a novel family having similarity to DNA binding proteins containing basic-leucine zipper regions; scr is expressed in cortex/endodermal initial cells and in the endodermal cell lineage. Regulates the radial organization of the root. Is required cell-autonomously for distal specification of the quiescent center, which in turn regulates stem cell fate of immediately surrounding cells. SCR appears to be a direct target of SHR.  go_component nucleus|GO:0005634|15314023|IDA  go_process asymmetric cell division|GO:0008356|8756724|IMP  go_process gravitropism|GO:0009630|10322541|IMP  go_process radial pattern formation|GO:0009956|10631180|IMP  go_process maintenance of protein location in nucleus|GO:0051457|17446396|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|8756724|ISS  go_function protein binding|GO:0005515|17446396|IPI  go_function protein binding|GO:0005515|17785527|IPI  go_function protein homodimerization activity|GO:0042803|17446396|IPI  go_function sequence-specific DNA binding|GO:0043565|17446396|IDA  product SCR (SCARECROW); protein binding / protein homodimerization/ sequence-specific DNA binding / transcription factor  note SCARECROW (SCR); FUNCTIONS IN: protein binding, transcription factor activity, sequence-specific DNA binding, protein homodimerization activity; INVOLVED IN: maintenance of protein location in nucleus, radial pattern formation, gravitropism, asymmetric cell division; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: scarecrow transcription factor family protein (TAIR:AT5G41920.1); Has 3194 Blast hits to 3061 proteins in 349 species: Archae - 0; Bacteria - 22; Metazoa - 831; Fungi - 322; Plants - 1550; Viruses - 19; Other Eukaryotes - 450 (source: NCBI BLink).  protein_id AT3G54220.1p  transcript_id AT3G54220.1  protein_id AT3G54220.1p  transcript_id AT3G54220.1  
At3g54230	chr3:020073872	0.0	W/20073872-20073919,20074104-20074144,20074346-20075060,20075151-20075222,20075310-20075402,20075493-20075572,20075723-20075873,20076592-20076676,20076818-20076909,20077002-20077070,20077630-20077809,20077965-20078157,20078768-20079595,20079692-20079879,20079954-20080142	AT3G54230.1  CDS  go_component intracellular|GO:0005622||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function nucleic acid binding|GO:0003676||ISS  product nucleic acid binding / nucleotide binding / zinc ion binding  note nucleic acid binding / nucleotide binding / zinc ion binding; FUNCTIONS IN: nucleotide binding, zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), D111/G-patch (InterPro:IPR000467), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT4G34140.1); Has 20642 Blast hits to 13667 proteins in 535 species: Archae - 6; Bacteria - 801; Metazoa - 11771; Fungi - 2522; Plants - 2184; Viruses - 3; Other Eukaryotes - 3355 (source: NCBI BLink).  protein_id AT3G54230.1p  transcript_id AT3G54230.1  protein_id AT3G54230.1p  transcript_id AT3G54230.1  
At3g54240	chr3:020080926	0.0	W/20080926-20080935,20081028-20081290,20081366-20082145	AT3G54240.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, sepal, flower, pollen tube, seed; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT2G36290.1); Has 734 Blast hits to 733 proteins in 176 species: Archae - 6; Bacteria - 390; Metazoa - 6; Fungi - 26; Plants - 190; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT3G54240.1p  transcript_id AT3G54240.1  protein_id AT3G54240.1p  transcript_id AT3G54240.1  
At3g54250	chr3:020084479	0.0	C/20084479-20084688,20084176-20084374,20084029-20084092,20083724-20083868,20083372-20083458,20083136-20083293,20082988-20083036,20082795-20082919,20082468-20082690	AT3G54250.1  CDS  go_process isoprenoid biosynthetic process|GO:0008299||IEA  go_process phosphorylation|GO:0016310||IEA  go_function diphosphomevalonate decarboxylase activity|GO:0004163||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||IEA  go_component cellular_component|GO:0005575||ND  go_function diphosphomevalonate decarboxylase activity|GO:0004163||ISS  product mevalonate diphosphate decarboxylase, putative  note mevalonate diphosphate decarboxylase, putative; FUNCTIONS IN: diphosphomevalonate decarboxylase activity, kinase activity, ATP binding; INVOLVED IN: isoprenoid biosynthetic process, phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Diphosphomevalonate decarboxylase (InterPro:IPR005935), GHMP kinase (InterPro:IPR006204), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721), GHMP kinase, C-terminal (InterPro:IPR013750); BEST Arabidopsis thaliana protein match is: MVD1 (MEVALONATE DIPHOSPHATE DECARBOXYLASE 1); diphosphomevalonate decarboxylase/ protein homodimerization (TAIR:AT2G38700.1); Has 861 Blast hits to 861 proteins in 341 species: Archae - 24; Bacteria - 368; Metazoa - 103; Fungi - 98; Plants - 34; Viruses - 0; Other Eukaryotes - 234 (source: NCBI BLink).  protein_id AT3G54250.1p  transcript_id AT3G54250.1  protein_id AT3G54250.1p  transcript_id AT3G54250.1  
At3g54260	chr3:020086435	0.0	C/20086435-20086745,20086077-20086248,20085810-20085991,20085503-20085652,20085097-20085421	AT3G54260.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42570.1); Has 731 Blast hits to 699 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 730; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G54260.1p  transcript_id AT3G54260.1  protein_id AT3G54260.1p  transcript_id AT3G54260.1  
At3g54270	chr3:020089676	0.0	C/20089676-20089735,20089279-20089584,20088820-20088921,20088528-20088722,20088155-20088445,20087815-20088001,20087605-20087651,20087419-20087508	AT3G54270.1  CDS  go_process sucrose biosynthetic process|GO:0005986||IEA  go_process metabolic process|GO:0008152||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function catalytic activity|GO:0003824||IEA  go_function phosphatase activity|GO:0016791||IEA  go_function sucrose-phosphatase activity|GO:0050307||IEA  go_process sucrose biosynthetic process|GO:0005986||ISS  go_function sucrose-phosphatase activity|GO:0050307||ISS  product sucrose-phosphatase 3 (SPP3)  note sucrose-phosphatase 3 (SPP3); FUNCTIONS IN: phosphatase activity, magnesium ion binding, sucrose-phosphatase activity, catalytic activity; INVOLVED IN: sucrose biosynthetic process, metabolic process; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Sucrose-6F-phosphate phosphohydrolase, plant and cyanobacteria (InterPro:IPR006380), Sucrose-6-phosphate phosphohydrolase C-terminal (InterPro:IPR013679), HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Sucrose phosphatase, plant and cyanobacteria (InterPro:IPR012847), Sucrose-phosphate phosphatase (InterPro:IPR006378); BEST Arabidopsis thaliana protein match is: sucrose-phosphatase 1 (SPP1) (TAIR:AT2G35840.2); Has 462 Blast hits to 456 proteins in 164 species: Archae - 9; Bacteria - 285; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT3G54270.1p  transcript_id AT3G54270.1  protein_id AT3G54270.1p  transcript_id AT3G54270.1  
At3g54280	chr3:020092361	0.0	W/20092361-20092412,20092538-20092632,20093461-20093678,20093823-20093877,20094488-20094569,20094844-20095181,20095537-20095636,20095729-20096323,20096473-20096605,20096719-20096787,20097030-20097241,20097357-20097597,20097803-20097976,20098140-20098565,20098653-20099096,20099237-20099356,20099427-20099870,20100019-20100557,20100914-20101406,20101486-20101554,20101697-20101801,20101905-20102135,20102231-20102494,20102600-20102649,20102892-20103001,20103090-20103172,20103351-20103563,20103646-20103807	AT3G54280.1  CDS  gene_syn ATBTAF1, BTAF1, CHA16, CHR16, RGD3, ROOT GROWTH DEFECTIVE 3  gene RGD3  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function binding|GO:0005488||IEA  go_function ATP binding|GO:0005524||IEA  go_function DNA binding|GO:0003677||ISS  go_function helicase activity|GO:0004386||ISS  go_function ATP binding|GO:0005524||ISS  product RGD3 (ROOT GROWTH DEFECTIVE 3); ATP binding / DNA binding / binding / helicase/ nucleic acid binding  note ROOT GROWTH DEFECTIVE 3 (RGD3); FUNCTIONS IN: binding, helicase activity, DNA binding, nucleic acid binding, ATP binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), DEAD-like helicase, N-terminal (InterPro:IPR014001), Armadillo-type fold (InterPro:IPR016024), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: ATCHR12; ATP binding / DNA binding / helicase/ nucleic acid binding (TAIR:AT3G06010.1); Has 12994 Blast hits to 10757 proteins in 1097 species: Archae - 75; Bacteria - 2902; Metazoa - 3356; Fungi - 2768; Plants - 782; Viruses - 135; Other Eukaryotes - 2976 (source: NCBI BLink).  protein_id AT3G54280.1p  transcript_id AT3G54280.1  protein_id AT3G54280.1p  transcript_id AT3G54280.1  
At3g54290	chr3:020105200	0.0	C/20105200-20105845,20104961-20105109,20104623-20104880	AT3G54290.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haemerythrin/HHE cation-binding motif (InterPro:IPR012312); Has 35 Blast hits to 35 proteins in 7 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G54290.1p  transcript_id AT3G54290.1  protein_id AT3G54290.1p  transcript_id AT3G54290.1  
At3g54300	chr3:020109938	0.0	C/20109938-20110127,20109639-20109837,20109432-20109552,20108355-20108567	AT3G54300.1  CDS  gene_syn ATVAMP727, VAMP727, VESICLE-ASSOCIATED MEMBRANE PROTEIN 727  gene ATVAMP727  function Encodes a member of Synaptobrevin -like protein family. VAMP727 is a R-SNARE and interacts with SYP22/VTI11/SYP51. It is required for trafficking of storage proteins to the protein storage vacuoles (PSV) and also for PSV organization and biogenesis. Loss of function mutations have no phenotype but double mutants with SYP22 are embryo lethal.  go_component endosome|GO:0005768|15876431|TAS  go_component endosome|GO:0005768|18984676|IDA  go_component membrane|GO:0016020||ISS  go_component SNARE complex|GO:0031201|18984676|IPI  go_process protein targeting to vacuole|GO:0006623|18984676|IMP  go_process vacuole organization|GO:0007033|18984676|IMP  go_function molecular_function|GO:0003674||ND  product ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)  note VESICLE-ASSOCIATED MEMBRANE PROTEIN 727 (ATVAMP727); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vacuole organization, protein targeting to vacuole; LOCATED IN: SNARE complex, endosome, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: ATVAMP725 (TAIR:AT2G32670.1); Has 1749 Blast hits to 1748 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 819; Fungi - 288; Plants - 362; Viruses - 0; Other Eukaryotes - 280 (source: NCBI BLink).  protein_id AT3G54300.1p  transcript_id AT3G54300.1  protein_id AT3G54300.1p  transcript_id AT3G54300.1  
At3g54300	chr3:020109938	0.0	C/20109938-20110127,20109639-20109837,20109432-20109552,20108355-20108567	AT3G54300.2  CDS  gene_syn ATVAMP727, VAMP727, VESICLE-ASSOCIATED MEMBRANE PROTEIN 727  gene ATVAMP727  function Encodes a member of Synaptobrevin -like protein family. VAMP727 is a R-SNARE and interacts with SYP22/VTI11/SYP51. It is required for trafficking of storage proteins to the protein storage vacuoles (PSV) and also for PSV organization and biogenesis. Loss of function mutations have no phenotype but double mutants with SYP22 are embryo lethal.  go_component endosome|GO:0005768|15876431|TAS  go_component endosome|GO:0005768|18984676|IDA  go_component membrane|GO:0016020||ISS  go_component SNARE complex|GO:0031201|18984676|IPI  go_process protein targeting to vacuole|GO:0006623|18984676|IMP  go_process vacuole organization|GO:0007033|18984676|IMP  go_function molecular_function|GO:0003674||ND  product ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)  note VESICLE-ASSOCIATED MEMBRANE PROTEIN 727 (ATVAMP727); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vacuole organization, protein targeting to vacuole; LOCATED IN: SNARE complex, endosome, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: ATVAMP725 (TAIR:AT2G32670.1); Has 1749 Blast hits to 1748 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 819; Fungi - 288; Plants - 362; Viruses - 0; Other Eukaryotes - 280 (source: NCBI BLink).  protein_id AT3G54300.2p  transcript_id AT3G54300.2  protein_id AT3G54300.2p  transcript_id AT3G54300.2  
At3g54310	chr3:020112545	0.0	C/20112545-20112944,20112056-20112216,20111918-20111965,20111698-20111805,20111316-20111588,20111153-20111239	AT3G54310.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, hypocotyl, root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38430.1); Has 16 Blast hits to 15 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G54310.1p  transcript_id AT3G54310.1  protein_id AT3G54310.1p  transcript_id AT3G54310.1  
At3g54320	chr3:020114809	0.0	W/20114809-20115020,20115127-20115209,20115339-20115347,20115466-20115554,20115649-20115773,20116059-20116135,20117776-20118467,20118570-20118599	AT3G54320.1  CDS  gene_syn ACTIVATOR OF SPO(MIN)::LUC1, ASML1, WRI, WRI1, WRINKLED, WRINKLED 1  gene WRI1  function WRINKLED1 encodes transcription factor of the AP2/ERWEBP class. Protein has two plant-specific (AP2/EREB) DNA-binding domains and is involved in the control of storage compound biosynthesis in Arabidopsis. Mutants have wrinkled seed phenotype, due to a defect in the incorporation of sucrose and glucose into triacylglycerols. Transgenic sGsL plants (21-day-old) grown on 6% sucrose for 24 hours had 2-fold increase in levels of expressions (sGsL line carries a single copy of T-DNA containing the Spomin::GUS-Spomin::LUC dual reporter genes in the upper arm of chromosome 5 of ecotype Col-0. The sporamin .minimal. promoter directs sugar-inducible expression of the LUC and GUS reporters in leaves). Regulation by LEC2 promotes fatty acid accumulation during seed maturation.  go_component nucleus|GO:0005634|10948255|IC  go_process regulation of carbohydrate metabolic process|GO:0006109|9733529|IMP  go_process regulation of glycolysis|GO:0006110|16553903|IMP  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process lipid biosynthetic process|GO:0008610|9733529|IMP  go_process response to sucrose stimulus|GO:0009744|15753106|IEP  go_process triglyceride biosynthetic process|GO:0019432|15500472|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|15500472|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRI1 (WRINKLED 1); DNA binding / transcription factor  note WRINKLED 1 (WRI1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ovule development protein, putative (TAIR:AT1G79700.2); Has 8944 Blast hits to 3879 proteins in 264 species: Archae - 18; Bacteria - 30; Metazoa - 3633; Fungi - 140; Plants - 4570; Viruses - 81; Other Eukaryotes - 472 (source: NCBI BLink).  protein_id AT3G54320.1p  transcript_id AT3G54320.1  protein_id AT3G54320.1p  transcript_id AT3G54320.1  
At3g54320	chr3:020114809	0.0	W/20114809-20115020,20115127-20115209,20115339-20115347,20115466-20115554,20115649-20115773,20116059-20116135,20117776-20118473	AT3G54320.3  CDS  gene_syn ACTIVATOR OF SPO(MIN)::LUC1, ASML1, WRI, WRI1, WRINKLED, WRINKLED 1  gene WRI1  function WRINKLED1 encodes transcription factor of the AP2/ERWEBP class. Protein has two plant-specific (AP2/EREB) DNA-binding domains and is involved in the control of storage compound biosynthesis in Arabidopsis. Mutants have wrinkled seed phenotype, due to a defect in the incorporation of sucrose and glucose into triacylglycerols. Transgenic sGsL plants (21-day-old) grown on 6% sucrose for 24 hours had 2-fold increase in levels of expressions (sGsL line carries a single copy of T-DNA containing the Spomin::GUS-Spomin::LUC dual reporter genes in the upper arm of chromosome 5 of ecotype Col-0. The sporamin .minimal. promoter directs sugar-inducible expression of the LUC and GUS reporters in leaves). Regulation by LEC2 promotes fatty acid accumulation during seed maturation.  go_component nucleus|GO:0005634|10948255|IC  go_process regulation of carbohydrate metabolic process|GO:0006109|9733529|IMP  go_process regulation of glycolysis|GO:0006110|16553903|IMP  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process lipid biosynthetic process|GO:0008610|9733529|IMP  go_process response to sucrose stimulus|GO:0009744|15753106|IEP  go_process triglyceride biosynthetic process|GO:0019432|15500472|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|15500472|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRI1 (WRINKLED 1); DNA binding / transcription factor  note WRINKLED 1 (WRI1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ovule development protein, putative (TAIR:AT1G79700.2); Has 8942 Blast hits to 3880 proteins in 264 species: Archae - 18; Bacteria - 30; Metazoa - 3633; Fungi - 139; Plants - 4571; Viruses - 81; Other Eukaryotes - 470 (source: NCBI BLink).  protein_id AT3G54320.3p  transcript_id AT3G54320.3  protein_id AT3G54320.3p  transcript_id AT3G54320.3  
At3g54320	chr3:020115133	0.0	W/20115133-20115214,20115466-20115554,20115649-20115773,20116059-20116135,20117776-20118473	AT3G54320.2  CDS  gene_syn ACTIVATOR OF SPO(MIN)::LUC1, ASML1, WRI, WRI1, WRINKLED, WRINKLED 1  gene WRI1  function WRINKLED1 encodes transcription factor of the AP2/ERWEBP class. Protein has two plant-specific (AP2/EREB) DNA-binding domains and is involved in the control of storage compound biosynthesis in Arabidopsis. Mutants have wrinkled seed phenotype, due to a defect in the incorporation of sucrose and glucose into triacylglycerols. Transgenic sGsL plants (21-day-old) grown on 6% sucrose for 24 hours had 2-fold increase in levels of expressions (sGsL line carries a single copy of T-DNA containing the Spomin::GUS-Spomin::LUC dual reporter genes in the upper arm of chromosome 5 of ecotype Col-0. The sporamin .minimal. promoter directs sugar-inducible expression of the LUC and GUS reporters in leaves). Regulation by LEC2 promotes fatty acid accumulation during seed maturation.  go_component nucleus|GO:0005634|10948255|IC  go_process regulation of carbohydrate metabolic process|GO:0006109|9733529|IMP  go_process regulation of glycolysis|GO:0006110|16553903|IMP  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process lipid biosynthetic process|GO:0008610|9733529|IMP  go_process response to sucrose stimulus|GO:0009744|15753106|IEP  go_process triglyceride biosynthetic process|GO:0019432|15500472|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|15500472|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRI1 (WRINKLED 1); DNA binding / transcription factor  note WRINKLED 1 (WRI1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ovule development protein, putative (TAIR:AT1G79700.2); Has 7478 Blast hits to 3378 proteins in 250 species: Archae - 18; Bacteria - 28; Metazoa - 3629; Fungi - 134; Plants - 3148; Viruses - 81; Other Eukaryotes - 440 (source: NCBI BLink).  protein_id AT3G54320.2p  transcript_id AT3G54320.2  protein_id AT3G54320.2p  transcript_id AT3G54320.2  
At3g54340	chr3:020120900	0.0	C/20120900-20121087,20120732-20120798,20120587-20120648,20120403-20120502,20120189-20120230,20119868-20119912,20119428-20119622	AT3G54340.1  CDS  gene_syn AP3, APETALA 3, FLORAL HOMEOTIC PROTEIN APETALA 3  gene AP3  function Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies petal and stamen identities. Associates with PISTILLATA.  go_component nucleus|GO:0005634|8698240|IDA  go_process petal development|GO:0048441|16679456|IDA  go_process stamen development|GO:0048443|16679456|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP3 (APETALA 3); DNA binding / transcription factor  note APETALA 3 (AP3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: stamen development, petal development; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGL71 (AGAMOUS-LIKE 71); transcription factor (TAIR:AT5G51870.1); Has 4961 Blast hits to 4959 proteins in 666 species: Archae - 0; Bacteria - 0; Metazoa - 550; Fungi - 206; Plants - 4135; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT3G54340.1p  transcript_id AT3G54340.1  protein_id AT3G54340.1p  transcript_id AT3G54340.1  
At3g54350	chr3:020125963	0.0	C/20125963-20126031,20123414-20124955,20123277-20123328,20122898-20123046,20122708-20122794,20122457-20122585,20122298-20122378	AT3G54350.1  CDS  gene_syn emb1967, embryo defective 1967  gene emb1967  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product emb1967 (embryo defective 1967)  note embryo defective 1967 (emb1967); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: forkhead-associated domain-containing protein / FHA domain-containing protein (TAIR:AT1G75530.1); Has 312 Blast hits to 207 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 221; Fungi - 14; Plants - 42; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT3G54350.1p  transcript_id AT3G54350.1  protein_id AT3G54350.1p  transcript_id AT3G54350.1  
At3g54350	chr3:020125963	0.0	C/20125963-20126031,20123414-20124955,20123277-20123328,20122898-20123046,20122708-20122794,20122457-20122585,20122298-20122378	AT3G54350.2  CDS  gene_syn emb1967, embryo defective 1967  gene emb1967  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product emb1967 (embryo defective 1967)  note embryo defective 1967 (emb1967); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: forkhead-associated domain-containing protein / FHA domain-containing protein (TAIR:AT1G75530.1); Has 312 Blast hits to 207 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 221; Fungi - 14; Plants - 42; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT3G54350.2p  transcript_id AT3G54350.2  protein_id AT3G54350.2p  transcript_id AT3G54350.2  
At3g54350	chr3:020125963	0.0	C/20125963-20126031,20123414-20124955,20123277-20123328,20122898-20123046,20122708-20122794,20122457-20122585,20122298-20122378	AT3G54350.3  CDS  gene_syn emb1967, embryo defective 1967  gene emb1967  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product emb1967 (embryo defective 1967)  note embryo defective 1967 (emb1967); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: forkhead-associated domain-containing protein / FHA domain-containing protein (TAIR:AT1G75530.1); Has 312 Blast hits to 207 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 221; Fungi - 14; Plants - 42; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT3G54350.3p  transcript_id AT3G54350.3  protein_id AT3G54350.3p  transcript_id AT3G54350.3  
At3g54360	chr3:020131193	0.0	C/20131193-20131581,20130871-20131105,20130606-20130751,20129884-20129971,20129656-20129802,20128734-20128883,20128570-20128632	AT3G54360.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); Has 679 Blast hits to 624 proteins in 99 species: Archae - 16; Bacteria - 83; Metazoa - 469; Fungi - 12; Plants - 26; Viruses - 8; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT3G54360.1p  transcript_id AT3G54360.1  protein_id AT3G54360.1p  transcript_id AT3G54360.1  
At3g54363	chr3:020132239	0.0	C/20132239-20132535	AT3G54363.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G54363.1p  transcript_id AT3G54363.1  protein_id AT3G54363.1p  transcript_id AT3G54363.1  
At3g54366	chr3:020132886	0.0	W/20132886-20133750	AT3G54366.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G54366.1  
At3g54380	chr3:020136515	0.0	C/20136515-20136752,20136145-20136245,20135634-20135855,20135035-20135253,20134858-20134943,20134648-20134744,20134250-20134342,20133985-20134149	AT3G54380.1  CDS  gene_syn T14E10.7  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SAC3/GANP family protein  note SAC3/GANP family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro:IPR005062); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G06290.1); Has 388 Blast hits to 386 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 169; Fungi - 127; Plants - 53; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT3G54380.1p  transcript_id AT3G54380.1  protein_id AT3G54380.1p  transcript_id AT3G54380.1  
At3g54380	chr3:020136515	0.0	C/20136515-20136752,20136145-20136245,20135634-20135855,20135035-20135253,20134858-20134943,20134648-20134744,20134250-20134342,20134068-20134163	AT3G54380.2  CDS  gene_syn T14E10.7  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SAC3/GANP family protein  note SAC3/GANP family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro:IPR005062); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G06290.1); Has 384 Blast hits to 383 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 169; Fungi - 125; Plants - 51; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT3G54380.2p  transcript_id AT3G54380.2  protein_id AT3G54380.2p  transcript_id AT3G54380.2  
At3g54390	chr3:020138348	0.0	C/20138348-20138863,20137912-20138286	AT3G54390.1  CDS  gene_syn T14E10.5  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT5G05550.2); Has 177 Blast hits to 174 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 2; Plants - 170; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G54390.1p  transcript_id AT3G54390.1  protein_id AT3G54390.1p  transcript_id AT3G54390.1  
At3g54400	chr3:020142156	0.0	C/20142156-20142599,20140881-20141358,20140291-20140646	AT3G54400.1  CDS  gene_syn T14E10.1  go_component cell wall|GO:0005618|14595688|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: apoplast, cell wall, chloroplast, plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: aspartic-type endopeptidase (TAIR:AT5G07030.1); Has 2550 Blast hits to 2536 proteins in 258 species: Archae - 0; Bacteria - 0; Metazoa - 903; Fungi - 313; Plants - 1121; Viruses - 0; Other Eukaryotes - 213 (source: NCBI BLink).  protein_id AT3G54400.1p  transcript_id AT3G54400.1  protein_id AT3G54400.1p  transcript_id AT3G54400.1  
At3g54410	chr3:020144918	0.0	W/20144918-20145235	AT3G54410.1  CDS  gene_syn T14E10.3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1163 (InterPro:IPR009544); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70040.1); Has 19 Blast hits to 19 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G54410.1p  transcript_id AT3G54410.1  protein_id AT3G54410.1p  transcript_id AT3G54410.1  
At3g54420	chr3:020145935	0.0	W/20145935-20146349,20146628-20147034	AT3G54420.1  CDS  gene_syn ATCHITIV, ATEP3, CHITINASE CLASS IV, CHIV, T14E10.4  gene ATEP3  function encodes an EP3 chitinase that is expressed during somatic embryogenesis in  nursing  cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs.  go_component cell wall|GO:0005618|14595688|IDA  go_process plant-type hypersensitive response|GO:0009626|9426222|TAS  go_process somatic embryogenesis|GO:0010262|11525512|IEP  go_function chitinase activity|GO:0004568|11525512|ISS  go_function chitinase activity|GO:0004568||ISS  product ATEP3; chitinase  note ATEP3; FUNCTIONS IN: chitinase activity; INVOLVED IN: somatic embryogenesis, plant-type hypersensitive response; LOCATED IN: cell wall; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: chitinase, putative (TAIR:AT2G43590.1); Has 1822 Blast hits to 1634 proteins in 370 species: Archae - 0; Bacteria - 351; Metazoa - 33; Fungi - 115; Plants - 1227; Viruses - 18; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT3G54420.1p  transcript_id AT3G54420.1  protein_id AT3G54420.1p  transcript_id AT3G54420.1  
At3g54430	chr3:020147506	0.0	C/20147506-20147851,20147224-20147429	AT3G54430.1  CDS  gene_syn SHI-RELATED SEQUENCE 6, SRS6, T14E10.2  gene SRS6  function A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SRS6 (SHI-RELATED SEQUENCE 6)  note SHI-RELATED SEQUENCE 6 (SRS6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: LRP1 (LATERAL ROOT PRIMORDIUM 1); protein homodimerization (TAIR:AT5G12330.2); Has 81 Blast hits to 81 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G54430.1p  transcript_id AT3G54430.1  protein_id AT3G54430.1p  transcript_id AT3G54430.1  
At3g54440	chr3:020156890	0.0	C/20156890-20157019,20156378-20156617,20155981-20156127,20155296-20155374,20154648-20154831,20154486-20154551,20154060-20154299,20153379-20153585,20152949-20153252,20152416-20152575,20152175-20152283,20151821-20151956,20150503-20150558,20150127-20150426,20149899-20150021,20148812-20149486,20148494-20148664	AT3G54440.2  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  go_function carbohydrate binding|GO:0030246||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycoside hydrolase family 2 protein  note glycoside hydrolase family 2 protein; FUNCTIONS IN: carbohydrate binding, cation binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, guard cell; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase family 2, immunoglobulin-like beta-sandwich (InterPro:IPR006102), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 42, domain 5 (InterPro:IPR004199), Glycoside hydrolase family 2, TIM barrel (InterPro:IPR006103), Glycoside hydrolase, family 2 (InterPro:IPR006101), Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718), Glycoside hydrolase family 2, carbohydrate-binding (InterPro:IPR006104), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycoside hydrolase, families 2 and 20, immunoglobulin-like beta-sandwich (InterPro:IPR013812), Galactose-binding like (InterPro:IPR008979); Has 3912 Blast hits to 3882 proteins in 802 species: Archae - 5; Bacteria - 2505; Metazoa - 162; Fungi - 155; Plants - 26; Viruses - 0; Other Eukaryotes - 1059 (source: NCBI BLink).  protein_id AT3G54440.2p  transcript_id AT3G54440.2  protein_id AT3G54440.2p  transcript_id AT3G54440.2  
At3g54440	chr3:020156890	0.0	C/20156890-20157019,20156378-20156617,20155981-20156127,20155296-20155374,20154648-20154831,20154486-20154551,20154060-20154299,20153379-20153585,20152949-20153252,20152416-20152575,20152175-20152283,20151821-20151956,20150503-20150558,20150127-20150426,20149899-20150021,20148815-20149486,20148494-20148664	AT3G54440.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  go_function carbohydrate binding|GO:0030246||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycoside hydrolase family 2 protein  note glycoside hydrolase family 2 protein; FUNCTIONS IN: carbohydrate binding, cation binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, guard cell; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase family 2, immunoglobulin-like beta-sandwich (InterPro:IPR006102), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 42, domain 5 (InterPro:IPR004199), Glycoside hydrolase family 2, TIM barrel (InterPro:IPR006103), Glycoside hydrolase, family 2 (InterPro:IPR006101), Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718), Glycoside hydrolase family 2, carbohydrate-binding (InterPro:IPR006104), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycoside hydrolase, families 2 and 20, immunoglobulin-like beta-sandwich (InterPro:IPR013812), Galactose-binding like (InterPro:IPR008979); Has 3990 Blast hits to 3960 proteins in 807 species: Archae - 5; Bacteria - 2582; Metazoa - 162; Fungi - 155; Plants - 26; Viruses - 0; Other Eukaryotes - 1060 (source: NCBI BLink).  protein_id AT3G54440.1p  transcript_id AT3G54440.1  protein_id AT3G54440.1p  transcript_id AT3G54440.1  
At3g54450	chr3:020158534	0.0	W/20158534-20158603,20158688-20158905,20159003-20159254,20159581-20159858,20160939-20161329,20161479-20161937	AT3G54450.1  CDS  go_process oligopeptide transport|GO:0006857||IEA  go_function transporter activity|GO:0005215||IEA  go_component membrane|GO:0016020|11152613|ISS  product transporter  note transporter; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region, conserved site (InterPro:IPR018456), TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT1G22540.1); Has 4773 Blast hits to 4570 proteins in 803 species: Archae - 0; Bacteria - 2213; Metazoa - 549; Fungi - 313; Plants - 1144; Viruses - 0; Other Eukaryotes - 554 (source: NCBI BLink).  protein_id AT3G54450.1p  transcript_id AT3G54450.1  protein_id AT3G54450.1p  transcript_id AT3G54450.1  
At3g54460	chr3:020166591	0.0	C/20166591-20167186,20163811-20166363,20163511-20163724,20163155-20163427,20163008-20163067,20162795-20162925,20162383-20162497,20162050-20162244	AT3G54460.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function zinc ion binding|GO:0008270||IEA  product SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein  note SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein; FUNCTIONS IN: in 6 functions; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Zinc finger, RING-type (InterPro:IPR001841), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), SNF2-related (InterPro:IPR000330), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: RAD5; ATP binding / ATP-dependent helicase/ DNA binding / helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding / protein binding / zinc ion binding (TAIR:AT5G22750.1); Has 9972 Blast hits to 7434 proteins in 743 species: Archae - 46; Bacteria - 1980; Metazoa - 2958; Fungi - 2768; Plants - 684; Viruses - 107; Other Eukaryotes - 1429 (source: NCBI BLink).  protein_id AT3G54460.1p  transcript_id AT3G54460.1  protein_id AT3G54460.1p  transcript_id AT3G54460.1  
At3g54470	chr3:020169457	0.0	C/20169457-20170245,20169281-20169364,20169020-20169102,20168848-20168935,20168512-20168766,20168285-20168416	AT3G54470.1  CDS  function encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5 -phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cellular_component|GO:0005575||ND  go_process nucleoside metabolic process|GO:0009116||ISS  go_process pyrimidine ribonucleotide biosynthetic process|GO:0009220|8041358|IGI  go_function orotate phosphoribosyltransferase activity|GO:0004588|8041358|IGI  go_function orotate phosphoribosyltransferase activity|GO:0004588||ISS  go_function orotidine-5 -phosphate decarboxylase activity|GO:0004590|8041358|IGI  go_function orotidine-5 -phosphate decarboxylase activity|GO:0004590||ISS  product uridine 5 -monophosphate synthase / UMP synthase (PYRE-F) (UMPS)  note uridine 5 -monophosphate synthase / UMP synthase (PYRE-F) (UMPS); FUNCTIONS IN: orotidine-5 -phosphate decarboxylase activity, orotate phosphoribosyltransferase activity; INVOLVED IN: response to cadmium ion, pyrimidine ribonucleotide biosynthetic process, nucleoside metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Orotidine 5&apos;-phosphate decarboxylase, subfamily 1, core (InterPro:IPR014732), Orotidine 5&apos;-phosphate decarboxylase, active site (InterPro:IPR018089), Ribulose-phosphate binding barrel (InterPro:IPR011060), Phosphoribosyltransferase (InterPro:IPR000836), Orotate phosphoribosyl transferase (InterPro:IPR004467), Orotidine 5&apos;-phosphate decarboxylase, core (InterPro:IPR001754); Has 6124 Blast hits to 6084 proteins in 1822 species: Archae - 266; Bacteria - 3028; Metazoa - 164; Fungi - 671; Plants - 43; Viruses - 2; Other Eukaryotes - 1950 (source: NCBI BLink).  protein_id AT3G54470.1p  transcript_id AT3G54470.1  protein_id AT3G54470.1p  transcript_id AT3G54470.1  
At3g54480	chr3:020173163	0.0	C/20173163-20173325,20172518-20172711	AT3G54480.2  CDS  gene_syn SKIP5, SKP1/ASK-INTERACTING PROTEIN 5, SKP5  gene SKIP5  function Encodes an SKP1 interacting partner (SKIP5).  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SKIP5 (SKP1/ASK-INTERACTING PROTEIN 5)  note SKP1/ASK-INTERACTING PROTEIN 5 (SKIP5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); Has 22 Blast hits to 22 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G54480.2p  transcript_id AT3G54480.2  protein_id AT3G54480.2p  transcript_id AT3G54480.2  
At3g54480	chr3:020173163	0.0	C/20173163-20173325,20172567-20172711,20172403-20172481,20171435-20171493,20170883-20171261	AT3G54480.1  CDS  gene_syn SKIP5, SKP1/ASK-INTERACTING PROTEIN 5, SKP5  gene SKIP5  function Encodes an SKP1 interacting partner (SKIP5).  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SKIP5 (SKP1/ASK-INTERACTING PROTEIN 5)  note SKP1/ASK-INTERACTING PROTEIN 5 (SKIP5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); Has 26 Blast hits to 26 proteins in 7 species: Archae - 2; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G54480.1p  transcript_id AT3G54480.1  protein_id AT3G54480.1p  transcript_id AT3G54480.1  
At3g54490	chr3:020173673	0.0	W/20173673-20173957,20174646-20174822,20174979-20175092,20175172-20175297	AT3G54490.1  CDS  gene_syn RNA POLYMERASE II FIFTH LARGEST SUBUNIT, E, RPB5E  gene RPB5E  function NRPE5-like protein of unknown function; homologous to budding yeast RPB5  go_component nucleus|GO:0005634||IEA  go_process transcription|GO:0006350||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_process transcription|GO:0006350||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product RPB5E (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, E); DNA binding / DNA-directed RNA polymerase  note RNA POLYMERASE II FIFTH LARGEST SUBUNIT, E (RPB5E); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: RNA polymerase, Rpb5, N-terminal (InterPro:IPR005571), RNA polymerase, subunit H/Rpb5 C-terminal (InterPro:IPR000783), DNA-directed RNA polymerase, RPB5 subunit (InterPro:IPR014381); BEST Arabidopsis thaliana protein match is: NRPE5; DNA binding / DNA-directed RNA polymerase (TAIR:AT3G57080.1); Has 562 Blast hits to 562 proteins in 200 species: Archae - 72; Bacteria - 0; Metazoa - 132; Fungi - 144; Plants - 73; Viruses - 0; Other Eukaryotes - 141 (source: NCBI BLink).  protein_id AT3G54490.1p  transcript_id AT3G54490.1  protein_id AT3G54490.1p  transcript_id AT3G54490.1  
At3g54500	chr3:020178158	0.0	C/20178158-20178275,20177935-20178064,20177408-20177690,20176528-20177226,20176306-20176457,20175792-20176119	AT3G54500.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G64170.2); Has 91 Blast hits to 91 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 7; Plants - 52; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G54500.2p  transcript_id AT3G54500.2  protein_id AT3G54500.2p  transcript_id AT3G54500.2  
At3g54500	chr3:020178714	0.0	C/20178714-20178737,20178161-20178491,20177935-20178064,20177408-20177690,20176528-20177226,20176306-20176457,20175792-20176119	AT3G54500.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G64170.2); Has 108 Blast hits to 102 proteins in 33 species: Archae - 0; Bacteria - 4; Metazoa - 36; Fungi - 7; Plants - 52; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G54500.1p  transcript_id AT3G54500.1  protein_id AT3G54500.1p  transcript_id AT3G54500.1  
At3g54510	chr3:020180339	0.0	W/20180339-20180631,20180697-20180840,20180929-20180992,20181074-20181286,20181364-20181528,20181602-20181900,20182005-20182284,20182383-20182661,20182731-20182964,20183053-20183220	AT3G54510.2  CDS  go_component membrane|GO:0016020||IEA  product early-responsive to dehydration protein-related / ERD protein-related  note early-responsive to dehydration protein-related / ERD protein-related; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: HYP1 (HYPOTHETICAL PROTEIN 1) (TAIR:AT3G01100.1); Has 903 Blast hits to 822 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 448; Plants - 240; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT3G54510.2p  transcript_id AT3G54510.2  protein_id AT3G54510.2p  transcript_id AT3G54510.2  
At3g54510	chr3:020180689	0.0	W/20180689-20180840,20180929-20180992,20181074-20181286,20181364-20181528,20181602-20181900,20182005-20182284,20182383-20182661,20182731-20182964,20183053-20183220	AT3G54510.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  product early-responsive to dehydration protein-related / ERD protein-related  note early-responsive to dehydration protein-related / ERD protein-related; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: HYP1 (HYPOTHETICAL PROTEIN 1) (TAIR:AT3G01100.1); Has 822 Blast hits to 808 proteins in 129 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 381; Plants - 228; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT3G54510.1p  transcript_id AT3G54510.1  protein_id AT3G54510.1p  transcript_id AT3G54510.1  
At3g54520	chr3:020184955	0.0	C/20184955-20185173,20184701-20184868,20184291-20184437,20184031-20184207,20183746-20183934	AT3G54520.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54530.1); Has 63 Blast hits to 61 proteins in 14 species: Archae - 0; Bacteria - 4; Metazoa - 8; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT3G54520.1p  transcript_id AT3G54520.1  protein_id AT3G54520.1p  transcript_id AT3G54520.1  
At3g54530	chr3:020187279	0.0	C/20187279-20187509,20187031-20187198,20186776-20186919,20186505-20186681,20186145-20186423	AT3G54530.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54520.1); Has 130 Blast hits to 130 proteins in 36 species: Archae - 2; Bacteria - 18; Metazoa - 47; Fungi - 2; Plants - 10; Viruses - 2; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT3G54530.1p  transcript_id AT3G54530.1  protein_id AT3G54530.1p  transcript_id AT3G54530.1  
At3g54540	chr3:020190393	0.0	W/20190393-20192564	AT3G54540.1  CDS  gene_syn ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 4, ATGCN4  gene ATGCN4  function member of GCN subfamily  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  product ATGCN4; transporter  note ATGCN4; FUNCTIONS IN: transporter activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATGCN3; transporter (TAIR:AT1G64550.1); Has 354706 Blast hits to 201016 proteins in 2547 species: Archae - 6982; Bacteria - 254370; Metazoa - 8936; Fungi - 4438; Plants - 2866; Viruses - 52; Other Eukaryotes - 77062 (source: NCBI BLink).  protein_id AT3G54540.1p  transcript_id AT3G54540.1  protein_id AT3G54540.1p  transcript_id AT3G54540.1  
At3g54550	chr3:020194322	0.0	C/20194322-20194663,20194043-20194235,20193627-20193958	AT3G54550.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38820.2); Has 212 Blast hits to 212 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 210; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G54550.1p  transcript_id AT3G54550.1  protein_id AT3G54550.1p  transcript_id AT3G54550.1  
At3g54560	chr3:020196532	0.0	W/20196532-20196645,20197170-20197466	AT3G54560.1  CDS  gene_syn HTA11  gene HTA11  function Encodes HTA11, a histone H2A protein.  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_function DNA binding|GO:0003677||IEA  go_process flower development|GO:0009908|17988222|IGI  go_process defense response to bacterium|GO:0042742|17988222|IGI  go_function DNA binding|GO:0003677||ISS  product HTA11; DNA binding  note HTA11; FUNCTIONS IN: DNA binding; INVOLVED IN: flower development, defense response to bacterium; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: HTA8 (HISTONE H2A 8); DNA binding (TAIR:AT2G38810.3); Has 3234 Blast hits to 3234 proteins in 276 species: Archae - 0; Bacteria - 0; Metazoa - 2169; Fungi - 241; Plants - 444; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink).  protein_id AT3G54560.1p  transcript_id AT3G54560.1  protein_id AT3G54560.1p  transcript_id AT3G54560.1  
At3g54570	chr3:020197949	0.0	C/20197949-20199202	AT3G54570.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product calmodulin-binding protein-related  note calmodulin-binding protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Calmodulin-binding, plant (InterPro:IPR012417); BEST Arabidopsis thaliana protein match is: calmodulin-binding protein-related (TAIR:AT2G38800.1); Has 137 Blast hits to 110 proteins in 35 species: Archae - 0; Bacteria - 7; Metazoa - 6; Fungi - 7; Plants - 67; Viruses - 7; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT3G54570.1p  transcript_id AT3G54570.1  protein_id AT3G54570.1p  transcript_id AT3G54570.1  
At3g54580	chr3:020200927	0.0	C/20200927-20203782	AT3G54580.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process plant-type cell wall organization|GO:0009664||IEA  go_function structural constituent of cell wall|GO:0005199||IEA  product proline-rich extensin-like family protein  note proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, root, pollen tube; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Extensin-like region (InterPro:IPR006706); Has 414371 Blast hits to 41379 proteins in 1437 species: Archae - 1027; Bacteria - 59890; Metazoa - 165000; Fungi - 61911; Plants - 58558; Viruses - 11522; Other Eukaryotes - 56463 (source: NCBI BLink).  protein_id AT3G54580.1p  transcript_id AT3G54580.1  protein_id AT3G54580.1p  transcript_id AT3G54580.1  
At3g54590	chr3:020206223	0.0	W/20206223-20206660,20206811-20208472	AT3G54590.1  CDS  gene_syn ATHRGP1, HYDROXYPROLINE-RICH GLYCOPROTEIN  gene ATHRGP1  function Encodes a hydroxyproline-rich glycoprotein.  go_component endomembrane system|GO:0012505||IEA  go_process plant-type cell wall organization|GO:0009664||IEA  go_function structural constituent of cell wall|GO:0005199||IEA  product ATHRGP1 (HYDROXYPROLINE-RICH GLYCOPROTEIN); structural constituent of cell wall  note HYDROXYPROLINE-RICH GLYCOPROTEIN (ATHRGP1); FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Extensin-like region (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: proline-rich extensin-like family protein (TAIR:AT3G54580.1); Has 1020 Blast hits to 838 proteins in 193 species: Archae - 6; Bacteria - 100; Metazoa - 336; Fungi - 98; Plants - 193; Viruses - 22; Other Eukaryotes - 265 (source: NCBI BLink).  protein_id AT3G54590.1p  transcript_id AT3G54590.1  protein_id AT3G54590.1p  transcript_id AT3G54590.1  
At3g54600	chr3:020211048	0.0	W/20211048-20211227,20211458-20211931,20212025-20212390,20212697-20212876	AT3G54600.1  CDS  go_component endomembrane system|GO:0012505||IEA  product DJ-1 family protein  note DJ-1 family protein; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: ThiJ/PfpI (InterPro:IPR002818); BEST Arabidopsis thaliana protein match is: YLS5 (TAIR:AT2G38860.2); Has 2977 Blast hits to 1806 proteins in 669 species: Archae - 176; Bacteria - 2553; Metazoa - 7; Fungi - 4; Plants - 52; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink).  protein_id AT3G54600.1p  transcript_id AT3G54600.1  protein_id AT3G54600.1p  transcript_id AT3G54600.1  
At3g54610	chr3:020213593	0.0	W/20213593-20214225,20214313-20214377,20214487-20214567,20214667-20214738,20214983-20215151,20215422-20215465,20215711-20215810,20216210-20216278,20216363-20216417,20216647-20216765,20216875-20216968,20217081-20217222,20217312-20217375	AT3G54610.1  CDS  gene_syn BGT, BIG TOP, GCN5, GENERAL CONTROL NON-REPRESSIBLE 5, HAC3, HAG01, HAG1, HAT1, HISTONE ACETYLTRANSFERASE 1, HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 1  gene HAG1  function Encodes a histone acetyltransferase that is plays a role in the determination of the embryonic root-shoot axis. It is also required to regulate the floral meristem activity by modulating the extent of expression of WUS and AG. In other eukaryotes, this protein is recruited to specific promoters by DNA binding transcription factors and is thought to promote transcription by acetylating the N-terminal tail of histone H3. The enzyme has indeed been shown to catalyse primarily the acetylation of H3 histone with only traces of H4 and H2A/B being acetylated. Non-acetylated H3 peptide or an H3 peptide that had been previously acetylated on K9 both serve as excellent substrates for HAG1-catalyzed acetylation. However, prior acetylation of H3 lysine 14 blocks radioactive acetylation of the peptide by HAG1. HAG1 is specific for histone H3 lysine 14.  go_component nucleus|GO:0005634|14617066|IDA  go_component histone acetyltransferase complex|GO:0000123|11266554|IPI  go_component nucleus|GO:0005634|16763149|IDA  go_component nucleus|GO:0005634|17877703|IDA  go_process response to light stimulus|GO:0009416|17085686|IMP  go_process flower development|GO:0009908|12740375|IMP  go_process root morphogenesis|GO:0010015|17085686|IMP  go_process histone acetylation|GO:0016573|17085686|IDA  go_process positive regulation of transcription|GO:0045941|11266554|TAS  go_function DNA binding|GO:0003677|17085686|IDA  go_function histone acetyltransferase activity|GO:0004402|11266554|IDA  go_function histone acetyltransferase activity|GO:0004402|12466527|ISS  go_function H3 histone acetyltransferase activity|GO:0010484|17877703|IDA  product GCN5; DNA binding / H3 histone acetyltransferase/ histone acetyltransferase  note GCN5; FUNCTIONS IN: histone acetyltransferase activity, H3 histone acetyltransferase activity, DNA binding; INVOLVED IN: flower development, histone acetylation, positive regulation of transcription, response to light stimulus, root morphogenesis; LOCATED IN: histone acetyltransferase complex, nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Bromodomain, conserved site (InterPro:IPR018359), Acyl-CoA N-acyltransferase (InterPro:IPR016181), Bromodomain (InterPro:IPR001487); Has 12289 Blast hits to 4589 proteins in 262 species: Archae - 4; Bacteria - 1273; Metazoa - 4444; Fungi - 1063; Plants - 272; Viruses - 1; Other Eukaryotes - 5232 (source: NCBI BLink).  protein_id AT3G54610.1p  transcript_id AT3G54610.1  protein_id AT3G54610.1p  transcript_id AT3G54610.1  
At3g54620	chr3:020219886	0.0	C/20219886-20220341,20219718-20219778,20219065-20219251,20218606-20218789	AT3G54620.2  CDS  gene_syn ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 25, ATBZIP25, BASIC LEUCINE ZIPPER 25, BASIC LEUCINE ZIPPER O2 HOMOLOG 4, BZIP25, BZO2H4  gene BZIP25  function bZIP transcription factor-like protein mRNA  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function protein heterodimerization activity|GO:0046982|16709202|IPI  product BZIP25 (BASIC LEUCINE ZIPPER 25); protein heterodimerization/ transcription factor  note BASIC LEUCINE ZIPPER 25 (BZIP25); FUNCTIONS IN: transcription factor activity, protein heterodimerization activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); Has 397 Blast hits to 397 proteins in 39 species: Archae - 0; Bacteria - 4; Metazoa - 21; Fungi - 6; Plants - 363; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G54620.2p  transcript_id AT3G54620.2  protein_id AT3G54620.2p  transcript_id AT3G54620.2  
At3g54620	chr3:020219886	0.0	C/20219886-20220341,20219718-20219778,20219065-20219251,20218714-20218789,20218484-20218609,20218085-20218390	AT3G54620.1  CDS  gene_syn ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 25, ATBZIP25, BASIC LEUCINE ZIPPER 25, BASIC LEUCINE ZIPPER O2 HOMOLOG 4, BZIP25, BZO2H4  gene BZIP25  function bZIP transcription factor-like protein mRNA  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function protein heterodimerization activity|GO:0046982|16709202|IPI  product BZIP25 (BASIC LEUCINE ZIPPER 25); protein heterodimerization/ transcription factor  note BASIC LEUCINE ZIPPER 25 (BZIP25); FUNCTIONS IN: transcription factor activity, protein heterodimerization activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: BZO2H1; DNA binding / protein heterodimerization/ sequence-specific DNA binding / transcription factor (TAIR:AT4G02640.1); Has 1596 Blast hits to 1594 proteins in 146 species: Archae - 2; Bacteria - 12; Metazoa - 133; Fungi - 111; Plants - 1292; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT3G54620.1p  transcript_id AT3G54620.1  protein_id AT3G54620.1p  transcript_id AT3G54620.1  
At3g54625	chr3:020220810	0.0	W/20220810-20223024	AT3G54625.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT3G54630  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G54625.1  
At3g54630	chr3:020221195	0.0	C/20221195-20222901	AT3G54630.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Kinetochore protein Ndc80 (InterPro:IPR005550); Has 19800 Blast hits to 12108 proteins in 845 species: Archae - 345; Bacteria - 1709; Metazoa - 11031; Fungi - 1499; Plants - 797; Viruses - 39; Other Eukaryotes - 4380 (source: NCBI BLink).  protein_id AT3G54630.1p  transcript_id AT3G54630.1  protein_id AT3G54630.1p  transcript_id AT3G54630.1  
At3g54640	chr3:020225115	0.0	C/20225115-20225303,20224714-20224860,20224555-20224620,20224277-20224462,20223870-20223947,20223699-20223776,20223543-20223602,20223331-20223465	AT3G54640.1  CDS  gene_syn TRP3, TRYPTOPHAN SYNTHASE ALPHA CHAIN, TRYPTOPHAN-REQUIRING 3, TSA1  gene TSA1  function Catalyzes the conversion of indole-3-glycerolphosphate to indole, the penultimate reaction in the biosynthesis of tryptophan. Functions as a heterocomplex with tryptophan synthase beta subunit (TSA2).  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast|GO:0009507|7890741|IDA  go_process tryptophan biosynthetic process|GO:0000162|7476868|TAS  go_process defense response to bacterium|GO:0042742|19095898|IMP  go_process callose deposition in cell wall during defense response|GO:0052544|19095898|IMP  go_function tryptophan synthase activity|GO:0004834|7476868|IGI  product TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN); tryptophan synthase  note TRYPTOPHAN SYNTHASE ALPHA CHAIN (TSA1); FUNCTIONS IN: tryptophan synthase activity; INVOLVED IN: tryptophan biosynthetic process, defense response to bacterium, callose deposition in cell wall during defense response; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tryptophan synthase, alpha chain, active site (InterPro:IPR018204), Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060), Tryptophan synthase, alpha chain (InterPro:IPR002028); BEST Arabidopsis thaliana protein match is: tryptophan synthase, alpha subunit, putative (TAIR:AT4G02610.1); Has 5573 Blast hits to 5573 proteins in 1307 species: Archae - 155; Bacteria - 2655; Metazoa - 5; Fungi - 121; Plants - 97; Viruses - 0; Other Eukaryotes - 2540 (source: NCBI BLink).  protein_id AT3G54640.1p  transcript_id AT3G54640.1  protein_id AT3G54640.1p  transcript_id AT3G54640.1  
At3g54650	chr3:020228260	0.0	C/20228260-20228882,20227970-20228071,20227590-20227734,20227319-20227503,20227094-20227198,20226891-20226988,20226600-20226799,20226366-20226518,20226158-20226256,20226004-20226075	AT3G54650.1  CDS  gene_syn FBL17  gene FBL17  go_component chloroplast|GO:0009507||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_process pollen development|GO:0009555|19277118|IMP  go_process embryonic development|GO:0009790|19277118|IMP  go_process seed development|GO:0048316|19277118|IMP  go_process generative cell mitosis|GO:0055047|19277118|IMP  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product FBL17; ubiquitin-protein ligase  note FBL17; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: embryonic development, generative cell mitosis, seed development, pollen development, ubiquitin-dependent protein catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); Has 1265 Blast hits to 887 proteins in 101 species: Archae - 0; Bacteria - 21; Metazoa - 649; Fungi - 49; Plants - 355; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink).  protein_id AT3G54650.1p  transcript_id AT3G54650.1  protein_id AT3G54650.1p  transcript_id AT3G54650.1  
At3g54660	chr3:020232700	0.0	C/20232700-20233100,20232335-20232560,20231971-20232249,20231709-20231885,20231487-20231540,20231209-20231357,20230980-20231043,20230733-20230903,20230507-20230641,20230356-20230397	AT3G54660.1  CDS  gene_syn ATGR2, EMB2360, GLUTATHIONE REDUCTASE, GR  gene GR  function Encodes glutathione reductase that is most likely localized in the chloroplast.  go_component mitochondrion|GO:0005739|17137349|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|12954611|IDA  go_component chloroplast|GO:0009507||ISS  go_process glutathione metabolic process|GO:0006749||IDA  go_function glutathione-disulfide reductase activity|GO:0004362||IDA  go_function glutathione-disulfide reductase activity|GO:0004362||ISS  product GR (GLUTATHIONE REDUCTASE); ATP binding / glutathione-disulfide reductase  note GLUTATHIONE REDUCTASE (GR); FUNCTIONS IN: glutathione-disulfide reductase activity, ATP binding; INVOLVED IN: glutathione metabolic process; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, class I, active site (InterPro:IPR012999), Glutathione reductase, plant (InterPro:IPR006324), Pyridine nucleotide-disulphide oxidoreductase, dimerisation (InterPro:IPR004099); BEST Arabidopsis thaliana protein match is: ATGR1 (glutathione-disulfide reductase); FAD binding / NADP or NADPH binding / glutathione-disulfide reductase/ oxidoreductase (TAIR:AT3G24170.3); Has 21050 Blast hits to 21028 proteins in 1857 species: Archae - 427; Bacteria - 12740; Metazoa - 690; Fungi - 299; Plants - 313; Viruses - 0; Other Eukaryotes - 6581 (source: NCBI BLink).  protein_id AT3G54660.1p  transcript_id AT3G54660.1  protein_id AT3G54660.1p  transcript_id AT3G54660.1  
At3g54670	chr3:020235818	0.0	W/20235818-20236258,20236361-20236597,20236704-20236937,20237101-20237339,20237761-20238027,20238450-20238720,20239179-20239325,20239478-20239625,20239722-20239829,20239906-20240045,20240221-20240316,20240395-20240603,20241078-20241247,20241856-20241965,20242049-20242425,20242690-20242941,20243338-20243559,20243653-20243701	AT3G54670.1  CDS  gene_syn ATSMC1, SMC1, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, TITAN8, TTN8  gene TTN8  function cohesin  go_component chloroplast|GO:0009507|15028209|IDA  go_process chromosome organization|GO:0051276||IEA  go_component nucleus|GO:0005634||ISS  go_component cohesin complex|GO:0008278|11846874|ISS  go_process chromosome segregation|GO:0007059||ISS  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  go_function ATP binding|GO:0005524||ISS  product TTN8 (TITAN8); ATP binding / transporter  note TITAN8 (TTN8); FUNCTIONS IN: transporter activity, ATP binding; INVOLVED IN: chromosome segregation, chromosome organization; LOCATED IN: cohesin complex, nucleus, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3); ATP binding / transporter (TAIR:AT5G48600.1); Has 160413 Blast hits to 69827 proteins in 2302 species: Archae - 1512; Bacteria - 19527; Metazoa - 72133; Fungi - 10672; Plants - 4930; Viruses - 881; Other Eukaryotes - 50758 (source: NCBI BLink).  protein_id AT3G54670.1p  transcript_id AT3G54670.1  protein_id AT3G54670.1p  transcript_id AT3G54670.1  
At3g54670	chr3:020240428	0.0	W/20240428-20240603,20241078-20241247,20241856-20241965,20242049-20242425,20242690-20242941,20243332-20243559,20243653-20243701	AT3G54670.2  CDS  gene_syn ATSMC1, SMC1, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, TITAN8, TTN8  gene TTN8  function cohesin  go_component nucleus|GO:0005634||ISS  go_component cohesin complex|GO:0008278|11846874|ISS  go_process chromosome segregation|GO:0007059||ISS  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  go_function ATP binding|GO:0005524||ISS  product TTN8 (TITAN8); ATP binding / transporter  note TITAN8 (TTN8); FUNCTIONS IN: transporter activity, ATP binding; INVOLVED IN: chromosome segregation; LOCATED IN: cohesin complex, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3); ATP binding / transporter (TAIR:AT5G48600.1); Has 30435 Blast hits to 20320 proteins in 1518 species: Archae - 437; Bacteria - 4229; Metazoa - 12780; Fungi - 1934; Plants - 649; Viruses - 99; Other Eukaryotes - 10307 (source: NCBI BLink).  protein_id AT3G54670.2p  transcript_id AT3G54670.2  protein_id AT3G54670.2p  transcript_id AT3G54670.2  
At3g54680	chr3:020244568	0.0	W/20244568-20245202,20245689-20245689	AT3G54680.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product proteophosphoglycan-related  note proteophosphoglycan-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; Has 4087 Blast hits to 405 proteins in 103 species: Archae - 2; Bacteria - 51; Metazoa - 124; Fungi - 85; Plants - 81; Viruses - 11; Other Eukaryotes - 3733 (source: NCBI BLink).  protein_id AT3G54680.1p  transcript_id AT3G54680.1  protein_id AT3G54680.1p  transcript_id AT3G54680.1  
At3g54690	chr3:020246586	0.0	W/20246586-20247257,20247350-20247573,20247654-20247810	AT3G54690.1  CDS  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function sugar binding|GO:0005529||IEA  go_function isomerase activity|GO:0016853||IEA  product sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein  note sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein; FUNCTIONS IN: isomerase activity, sugar binding; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: KpsF/GutQ (InterPro:IPR004800), Sugar isomerase (SIS) (InterPro:IPR001347), Cystathionine beta-synthase, core (InterPro:IPR000644); Has 5872 Blast hits to 5870 proteins in 1010 species: Archae - 105; Bacteria - 3081; Metazoa - 10; Fungi - 90; Plants - 20; Viruses - 2; Other Eukaryotes - 2564 (source: NCBI BLink).  protein_id AT3G54690.1p  transcript_id AT3G54690.1  protein_id AT3G54690.1p  transcript_id AT3G54690.1  
At3g54700	chr3:020248463	0.0	C/20248463-20250070	AT3G54700.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process transport|GO:0006810||IEA  go_process phosphate transport|GO:0006817||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function phosphate transmembrane transporter activity|GO:0015114||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product carbohydrate transmembrane transporter/ phosphate transmembrane transporter/ sugar:hydrogen symporter  note carbohydrate transmembrane transporter/ phosphate transmembrane transporter/ sugar:hydrogen symporter; FUNCTIONS IN: phosphate transmembrane transporter activity, carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, phosphate transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Phosphate permease (InterPro:IPR004738), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ATPT2 (ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2); carbohydrate transmembrane transporter/ inorganic phosphate transmembrane transporter/ phosphate transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT2G38940.1); Has 16563 Blast hits to 16495 proteins in 1155 species: Archae - 293; Bacteria - 11195; Metazoa - 1380; Fungi - 2226; Plants - 802; Viruses - 0; Other Eukaryotes - 667 (source: NCBI BLink).  protein_id AT3G54700.1p  transcript_id AT3G54700.1  protein_id AT3G54700.1p  transcript_id AT3G54700.1  
At3g54710	chr3:020251885	0.0	W/20251885-20252030,20252119-20252238,20252388-20252619,20252719-20253351,20253468-20253624,20253714-20253804,20253950-20254031	AT3G54710.1  CDS  gene_syn ARABIDOPSIS HOMOLOG OF YEAST CDT1, ARABIDOPSIS HOMOLOG OF YEAST CDT1 B, ARABIDOPSIS HOMOLOG OF YEAST CDT1 BARABIDOPSIS HOMOLOG OF YEAST CDT1 B, ATCDT1B, CDT1, CDT1B  gene CDT1B  function Encodes a cyclin-dependent protein kinase. Involved in nuclear DNA replication and plastid division.  go_process DNA replication|GO:0006260|15928083|IMP  go_process chloroplast organization|GO:0009658|15928083|IMP  go_function cyclin-dependent protein kinase activity|GO:0004693|15358564|ISS  product CDT1B (ARABIDOPSIS HOMOLOG OF YEAST CDT1 BARABIDOPSIS HOMOLOG OF YEAST CDT1 B); cyclin-dependent protein kinase  note ARABIDOPSIS HOMOLOG OF YEAST CDT1 BARABIDOPSIS HOMOLOG OF YEAST CDT1 B (CDT1B); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: chloroplast organization, DNA replication; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: DNA replication factor CDT1-like (InterPro:IPR014939); BEST Arabidopsis thaliana protein match is: CDT1A (ARABIDOPSIS HOMOLOG OF YEAST CDT1 A); cyclin-dependent protein kinase/ protein binding (TAIR:AT2G31270.1); Has 152 Blast hits to 133 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 2; Plants - 43; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT3G54710.1p  transcript_id AT3G54710.1  protein_id AT3G54710.1p  transcript_id AT3G54710.1  
At3g54720	chr3:020256838	0.0	C/20256838-20257815,20256465-20256707,20256229-20256381,20256069-20256131,20255906-20255993,20255720-20255803,20255515-20255603,20255325-20255438,20255097-20255237,20254852-20255016	AT3G54720.1  CDS  gene_syn ALTERED MERISTEM PROGRAM 1, AMP1, CONSTITUTIVE MORPHOGENESIS 2, COP2, HAUPTLING, HPT, PRIMORDIA TIMING, PT  gene AMP1  function Encodes glutamate carboxypeptidase. Various alleles show-increased cotyledon number and rate of leaf initiation, show transformation of leaves to cotyledons, altered flowering time and photomorphogenesis and an increased level of cytokinin biosynthesis. Involved in ethylene enhanced hypocotyl elongation in the light. Strong genetic interaction between TGH and AMP1.  go_component cellular_component|GO:0005575||ND  go_process proteolysis|GO:0006508||ISS  go_process photomorphogenesis|GO:0009640|12271066|IMP  go_process embryonic development|GO:0009790|17553903|IGI  go_process embryonic development|GO:0009790|17553903|IMP  go_process flower development|GO:0009908|17553903|IGI  go_process negative regulation of flower development|GO:0009910||IMP  go_process leaf vascular tissue pattern formation|GO:0010305|17553903|IGI  go_process root development|GO:0048364|17553903|IGI  go_process meristem development|GO:0048507|17553903|IGI  go_process meristem development|GO:0048507|17553903|IMP  go_function carboxypeptidase activity|GO:0004180|11549767|ISS  go_function dipeptidase activity|GO:0016805|11549767|ISS  product AMP1 (ALTERED MERISTEM PROGRAM 1); carboxypeptidase/ dipeptidase  note ALTERED MERISTEM PROGRAM 1 (AMP1); FUNCTIONS IN: carboxypeptidase activity, dipeptidase activity; INVOLVED IN: in 8 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Transferrin receptor-like, dimerisation (InterPro:IPR007365), Peptidase M28 (InterPro:IPR007484); BEST Arabidopsis thaliana protein match is: peptidase M28 family protein (TAIR:AT5G19740.1); Has 2370 Blast hits to 2343 proteins in 389 species: Archae - 10; Bacteria - 825; Metazoa - 623; Fungi - 274; Plants - 72; Viruses - 0; Other Eukaryotes - 566 (source: NCBI BLink).  protein_id AT3G54720.1p  transcript_id AT3G54720.1  protein_id AT3G54720.1p  transcript_id AT3G54720.1  
At3g54730	chr3:020259259	0.0	W/20259259-20259622,20259990-20259994	AT3G54730.3  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: OFP9 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 9) (TAIR:AT4G04030.1).  protein_id AT3G54730.3p  transcript_id AT3G54730.3  protein_id AT3G54730.3p  transcript_id AT3G54730.3  
At3g54730	chr3:020259259	0.0	W/20259259-20259640,20259990-20259994	AT3G54730.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: OFP9 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 9) (TAIR:AT4G04030.1).  protein_id AT3G54730.2p  transcript_id AT3G54730.2  protein_id AT3G54730.2p  transcript_id AT3G54730.2  
At3g54730	chr3:020259259	0.0	W/20259259-20259640,20260195-20260289	AT3G54730.4  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: OFP9 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 9) (TAIR:AT4G04030.1).  protein_id AT3G54730.4p  transcript_id AT3G54730.4  protein_id AT3G54730.4p  transcript_id AT3G54730.4  
At3g54730	chr3:020259259	0.0	W/20259259-20260422	AT3G54730.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19850.2); Has 20 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 11; Viruses - 3; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G54730.1p  transcript_id AT3G54730.1  protein_id AT3G54730.1p  transcript_id AT3G54730.1  
At3g54740	chr3:020262949	0.0	W/20262949-20264115,20264218-20264264,20264364-20264466	AT3G54740.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11850.2); Has 237 Blast hits to 221 proteins in 29 species: Archae - 3; Bacteria - 4; Metazoa - 8; Fungi - 3; Plants - 199; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT3G54740.2p  transcript_id AT3G54740.2  protein_id AT3G54740.2p  transcript_id AT3G54740.2  
At3g54740	chr3:020263093	0.0	W/20263093-20264115,20264218-20264264,20264364-20264466	AT3G54740.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11850.2); Has 217 Blast hits to 202 proteins in 21 species: Archae - 3; Bacteria - 4; Metazoa - 2; Fungi - 0; Plants - 199; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G54740.1p  transcript_id AT3G54740.1  protein_id AT3G54740.1p  transcript_id AT3G54740.1  
At3g54750	chr3:020268372	0.0	C/20268372-20268416,20268196-20268269,20267994-20268126,20267810-20267892,20267576-20267726,20267304-20267494,20266822-20267036,20266634-20266732,20266154-20266275,20265839-20265940,20265596-20265705,20265389-20265476,20265147-20265283,20264833-20265052	AT3G54750.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 113 Blast hits to 113 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G54750.1p  transcript_id AT3G54750.1  protein_id AT3G54750.1p  transcript_id AT3G54750.1  
At3g54750	chr3:020268372	0.0	C/20268372-20268416,20268196-20268269,20267994-20268126,20267810-20267892,20267576-20267726,20267304-20267494,20266822-20267036,20266634-20266732,20266154-20266275,20265839-20265940,20265596-20265705,20265389-20265476,20265147-20265283,20264833-20265052	AT3G54750.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 113 Blast hits to 113 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G54750.2p  transcript_id AT3G54750.2  protein_id AT3G54750.2p  transcript_id AT3G54750.2  
At3g54760	chr3:020269659	0.0	C/20269659-20272037	AT3G54760.1  CDS  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  product dentin sialophosphoprotein-related  note dentin sialophosphoprotein-related; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: guard cell, cultured cell; BEST Arabidopsis thaliana protein match is: PWWP domain-containing protein (TAIR:AT5G02950.1); Has 22290 Blast hits to 12629 proteins in 895 species: Archae - 109; Bacteria - 4489; Metazoa - 8055; Fungi - 2114; Plants - 799; Viruses - 230; Other Eukaryotes - 6494 (source: NCBI BLink).  protein_id AT3G54760.1p  transcript_id AT3G54760.1  protein_id AT3G54760.1p  transcript_id AT3G54760.1  
At3g54770	chr3:020275642	0.0	C/20275642-20275731,20275447-20275555,20275033-20275156,20274909-20274951,20274564-20274810,20273863-20273906	AT3G54770.2  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: root, carpel; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT1G20880.1); Has 2038 Blast hits to 1778 proteins in 199 species: Archae - 0; Bacteria - 22; Metazoa - 1110; Fungi - 161; Plants - 634; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).  protein_id AT3G54770.2p  transcript_id AT3G54770.2  protein_id AT3G54770.2p  transcript_id AT3G54770.2  
At3g54770	chr3:020275642	0.0	C/20275642-20275827,20275414-20275555,20275033-20275156,20274909-20274951,20274564-20274810,20273863-20273906	AT3G54770.1  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: root, carpel; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT1G20880.1); Has 8153 Blast hits to 6386 proteins in 368 species: Archae - 0; Bacteria - 234; Metazoa - 5038; Fungi - 627; Plants - 1645; Viruses - 0; Other Eukaryotes - 609 (source: NCBI BLink).  protein_id AT3G54770.1p  transcript_id AT3G54770.1  protein_id AT3G54770.1p  transcript_id AT3G54770.1  
At3g54780	chr3:020278985	0.0	W/20278985-20279200,20279615-20280490,20280620-20281429	AT3G54780.3  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G38970.1); Has 2736 Blast hits to 2719 proteins in 408 species: Archae - 32; Bacteria - 845; Metazoa - 929; Fungi - 102; Plants - 270; Viruses - 4; Other Eukaryotes - 554 (source: NCBI BLink).  protein_id AT3G54780.3p  transcript_id AT3G54780.3  protein_id AT3G54780.3p  transcript_id AT3G54780.3  
At3g54780	chr3:020278985	0.0	W/20278985-20279200,20279618-20280490,20280620-20281429	AT3G54780.2  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G38970.1); Has 2779 Blast hits to 2761 proteins in 406 species: Archae - 32; Bacteria - 845; Metazoa - 931; Fungi - 111; Plants - 298; Viruses - 4; Other Eukaryotes - 558 (source: NCBI BLink).  protein_id AT3G54780.2p  transcript_id AT3G54780.2  protein_id AT3G54780.2p  transcript_id AT3G54780.2  
At3g54780	chr3:020278985	0.0	W/20278985-20279200,20279618-20281429	AT3G54780.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G38970.1); Has 3231 Blast hits to 3212 proteins in 474 species: Archae - 51; Bacteria - 1057; Metazoa - 1015; Fungi - 120; Plants - 311; Viruses - 4; Other Eukaryotes - 673 (source: NCBI BLink).  protein_id AT3G54780.1p  transcript_id AT3G54780.1  protein_id AT3G54780.1p  transcript_id AT3G54780.1  
At3g54790	chr3:020284088	0.0	C/20284088-20284255,20283895-20284011,20281990-20283813,20281830-20281895	AT3G54790.2  CDS  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  product armadillo/beta-catenin repeat family protein / U-box domain-containing protein  note armadillo/beta-catenin repeat family protein / U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding / ubiquitin-protein ligase (TAIR:AT2G23140.1); Has 4308 Blast hits to 2838 proteins in 217 species: Archae - 0; Bacteria - 30; Metazoa - 1221; Fungi - 398; Plants - 2164; Viruses - 3; Other Eukaryotes - 492 (source: NCBI BLink).  protein_id AT3G54790.2p  transcript_id AT3G54790.2  protein_id AT3G54790.2p  transcript_id AT3G54790.2  
At3g54790	chr3:020284088	0.0	C/20284088-20284363,20283895-20284011,20281990-20283813,20281830-20281895	AT3G54790.1  CDS  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  product armadillo/beta-catenin repeat family protein / U-box domain-containing protein  note armadillo/beta-catenin repeat family protein / U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding / ubiquitin-protein ligase (TAIR:AT2G23140.1); Has 4298 Blast hits to 2844 proteins in 217 species: Archae - 0; Bacteria - 30; Metazoa - 1223; Fungi - 403; Plants - 2153; Viruses - 3; Other Eukaryotes - 486 (source: NCBI BLink).  protein_id AT3G54790.1p  transcript_id AT3G54790.1  protein_id AT3G54790.1p  transcript_id AT3G54790.1  
At3g54800	chr3:020286378	0.0	W/20286378-20286530,20286694-20286768,20286856-20286909,20286997-20287062,20287144-20287357,20287424-20287470,20287557-20287657,20287793-20287953,20288032-20288103,20288188-20288633,20288699-20288926,20289026-20289178,20289267-20289506,20289587-20289688,20289791-20289880	AT3G54800.1  CDS  go_process signal transduction|GO:0007165|15358268|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein  note pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769), Lipid-binding START (InterPro:IPR002913), Pleckstrin homology-type (InterPro:IPR011993), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein (TAIR:AT2G28320.1); Has 311 Blast hits to 305 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 0; Plants - 194; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT3G54800.1p  transcript_id AT3G54800.1  protein_id AT3G54800.1p  transcript_id AT3G54800.1  
At3g54800	chr3:020286378	0.0	W/20286378-20286530,20286694-20286768,20286856-20286909,20286997-20287062,20287144-20287357,20287424-20287470,20287557-20287657,20287793-20287953,20288032-20288103,20288188-20288633,20288699-20288926,20289026-20289178,20289267-20289506,20289587-20289688,20289791-20289880	AT3G54800.2  CDS  go_process signal transduction|GO:0007165|15358268|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein  note pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769), Pleckstrin homology-type (InterPro:IPR011993), Lipid-binding START (InterPro:IPR002913), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein (TAIR:AT2G28320.1); Has 311 Blast hits to 305 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 0; Plants - 194; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT3G54800.2p  transcript_id AT3G54800.2  protein_id AT3G54800.2p  transcript_id AT3G54800.2  
At3g54802	chr3:020291590	0.0	C/20291590-20291742	AT3G54802.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G54802.1p  transcript_id AT3G54802.1  protein_id AT3G54802.1p  transcript_id AT3G54802.1  
At3g54804	chr3:020293147	0.0	C/20293147-20293251	AT3G54804.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G54804.1p  transcript_id AT3G54804.1  protein_id AT3G54804.1p  transcript_id AT3G54804.1  
At3g54810	chr3:020296957	0.0	W/20296957-20297184,20297496-20298236	AT3G54810.1  CDS  gene_syn BLUE MICROPYLAR END 3, BLUE MICROPYLAR END 3-ZINC FINGER, BME3, BME3-ZF, T5N23.3  gene BME3  function Encodes a protein containing a GATA type zinc finger domain that is expressed in the embryo axis and involved in germination. Mutants have a reduced rate of germination even when stratified.  go_component nucleus|GO:0005634||IEA  go_process seed germination|GO:0009845|16359389|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product zinc finger (GATA type) family protein  note BLUE MICROPYLAR END 3 (BME3); FUNCTIONS IN: transcription factor activity; INVOLVED IN: seed germination; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: zinc finger (GATA type) family protein (TAIR:AT1G08010.2); Has 889 Blast hits to 873 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 350; Plants - 426; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT3G54810.1p  transcript_id AT3G54810.1  protein_id AT3G54810.1p  transcript_id AT3G54810.1  
At3g54810	chr3:020296957	0.0	W/20296957-20297184,20297496-20298236	AT3G54810.2  CDS  gene_syn BLUE MICROPYLAR END 3, BLUE MICROPYLAR END 3-ZINC FINGER, BME3, BME3-ZF, T5N23.3  gene BME3  function Encodes a protein containing a GATA type zinc finger domain that is expressed in the embryo axis and involved in germination. Mutants have a reduced rate of germination even when stratified.  go_component nucleus|GO:0005634||IEA  go_process seed germination|GO:0009845|16359389|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product zinc finger (GATA type) family protein  note BLUE MICROPYLAR END 3 (BME3); FUNCTIONS IN: transcription factor activity; INVOLVED IN: seed germination; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: zinc finger (GATA type) family protein (TAIR:AT1G08010.2); Has 889 Blast hits to 873 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 350; Plants - 426; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT3G54810.2p  transcript_id AT3G54810.2  protein_id AT3G54810.2p  transcript_id AT3G54810.2  
At3g54820	chr3:020302117	0.0	W/20302117-20302420,20302538-20302833,20303389-20303529,20303619-20303738	AT3G54820.1  CDS  gene_syn PIP2;5, PIP2D, PLASMA MEMBRANE INTRINSIC PROTEIN 2;5, PLASMA MEMBRANE INTRINSIC PROTEIN 2D  gene PIP2;5  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_function water channel activity|GO:0015250|11500536|ISS  go_function water channel activity|GO:0015250||ISS  product PIP2;5 (PLASMA MEMBRANE INTRINSIC PROTEIN 2;5); water channel  note PLASMA MEMBRANE INTRINSIC PROTEIN 2;5 (PIP2;5); FUNCTIONS IN: water channel activity; INVOLVED IN: transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2); water channel (TAIR:AT2G37170.1); Has 6824 Blast hits to 6815 proteins in 1262 species: Archae - 57; Bacteria - 2642; Metazoa - 1283; Fungi - 291; Plants - 1508; Viruses - 2; Other Eukaryotes - 1041 (source: NCBI BLink).  protein_id AT3G54820.1p  transcript_id AT3G54820.1  protein_id AT3G54820.1p  transcript_id AT3G54820.1  
At3g54823	chr3:020305300	0.0	C/20305300-20309796	AT3G54823.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 4.4e-203 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At3g54826	chr3:020310354	0.0	W/20310354-20310522,20311150-20311652	AT3G54826.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, Zim17-type (InterPro:IPR007853); Has 284 Blast hits to 284 proteins in 134 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 79; Plants - 58; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT3G54826.1p  transcript_id AT3G54826.1  protein_id AT3G54826.1p  transcript_id AT3G54826.1  
At3g54830	chr3:020314843	0.0	C/20314843-20315030,20314471-20314757,20313944-20314158,20313821-20313844,20313281-20313461,20312982-20313201,20312754-20312889,20312569-20312632,20312355-20312477,20312239-20312282,20312072-20312147,20311901-20311983	AT3G54830.1  CDS  gene_syn T5N23.1  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_function amine transmembrane transporter activity|GO:0005275||ISS  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product amino acid transporter family protein  note amino acid transporter family protein; FUNCTIONS IN: amino acid transmembrane transporter activity, amine transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid transporter family protein (TAIR:AT2G39130.1); Has 3280 Blast hits to 3275 proteins in 239 species: Archae - 4; Bacteria - 150; Metazoa - 1453; Fungi - 619; Plants - 616; Viruses - 3; Other Eukaryotes - 435 (source: NCBI BLink).  protein_id AT3G54830.1p  transcript_id AT3G54830.1  protein_id AT3G54830.1p  transcript_id AT3G54830.1  
At3g54840	chr3:020318597	0.0	W/20318597-20318621,20318856-20318935,20319374-20319457,20319600-20319694,20319791-20319896,20320210-20320299,20320404-20320490,20320723-20320737	AT3G54840.2  CDS  gene_syn ARA-6, ARA6, ATRAB5C, ATRABF1, RABF1  gene ARA6  function Encodes a novel Rab-like GTP-ase that is localized to the peripheral membrane of the endosome.  go_component early endosome|GO:0005769|11532937|IDA  go_component external side of endosome membrane|GO:0010009|11532937|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_process early endosome to late endosome transport|GO:0045022|11532937|IMP  go_function GTPase activity|GO:0003924|11532937|IDA  go_function GTP binding|GO:0005525||ISS  product ARA6; GTP binding / GTPase  note ARA6; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: early endosome to late endosome transport, N-terminal protein myristoylation; LOCATED IN: external side of endosome membrane, early endosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab5-related (InterPro:IPR015599); BEST Arabidopsis thaliana protein match is: ARA7; GTP binding (TAIR:AT4G19640.1); Has 20889 Blast hits to 20862 proteins in 589 species: Archae - 17; Bacteria - 98; Metazoa - 11653; Fungi - 2460; Plants - 1804; Viruses - 19; Other Eukaryotes - 4838 (source: NCBI BLink).  protein_id AT3G54840.2p  transcript_id AT3G54840.2  protein_id AT3G54840.2p  transcript_id AT3G54840.2  
At3g54840	chr3:020318597	0.0	W/20318597-20318621,20318856-20318935,20319374-20319457,20319600-20319694,20319791-20319896,20320210-20320299,20320404-20320490,20320741-20320782	AT3G54840.1  CDS  gene_syn ARA-6, ARA6, ATRAB5C, ATRABF1, RABF1  gene ARA6  function Encodes a novel Rab-like GTP-ase that is localized to the peripheral membrane of the endosome.  go_component early endosome|GO:0005769|11532937|IDA  go_component external side of endosome membrane|GO:0010009|11532937|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_process early endosome to late endosome transport|GO:0045022|11532937|IMP  go_function GTPase activity|GO:0003924|11532937|IDA  go_function GTP binding|GO:0005525||ISS  product ARA6; GTP binding / GTPase  note ARA6; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: early endosome to late endosome transport, N-terminal protein myristoylation; LOCATED IN: external side of endosome membrane, early endosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab5-related (InterPro:IPR015599); BEST Arabidopsis thaliana protein match is: ARA7; GTP binding (TAIR:AT4G19640.1); Has 21014 Blast hits to 20985 proteins in 591 species: Archae - 17; Bacteria - 98; Metazoa - 11727; Fungi - 2484; Plants - 1810; Viruses - 19; Other Eukaryotes - 4859 (source: NCBI BLink).  protein_id AT3G54840.1p  transcript_id AT3G54840.1  protein_id AT3G54840.1p  transcript_id AT3G54840.1  
At3g54850	chr3:020321524	0.0	W/20321524-20321805,20322052-20322168,20322257-20322670,20322763-20323848	AT3G54850.1  CDS  gene_syn ATPUB14, PUB14  gene PUB14  function Encodes a protein with ubiquitin ligase activity.  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein ubiquitination|GO:0016567|15231834|ISS  go_function ubiquitin-protein ligase activity|GO:0004842|15231834|IDA  product PUB14; ubiquitin-protein ligase  note PUB14; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: PUB13 (PLANT U-BOX 13); ubiquitin-protein ligase (TAIR:AT3G46510.1); Has 4733 Blast hits to 3199 proteins in 227 species: Archae - 2; Bacteria - 25; Metazoa - 1577; Fungi - 540; Plants - 2027; Viruses - 3; Other Eukaryotes - 559 (source: NCBI BLink).  protein_id AT3G54850.1p  transcript_id AT3G54850.1  protein_id AT3G54850.1p  transcript_id AT3G54850.1  
At3g54860	chr3:020329789	0.0	C/20329789-20329841,20329664-20329703,20329303-20329383,20329026-20329220,20328811-20328921,20328635-20328700,20328456-20328563,20328307-20328351,20327960-20328016,20327475-20327569,20327157-20327208,20327022-20327075,20326750-20326812,20326535-20326641,20326242-20326364,20326067-20326148,20325887-20325957,20325248-20325328,20324826-20324883,20324670-20324722,20324468-20324561,20324286-20324375	AT3G54860.1  CDS  gene_syn ATVPS33, VACUOLAR PROTEIN SORTING 33, VPS33  gene ATVPS33  function Homologous to yeast VPS33. Forms a complex with VCL1 and AtVPS11. Involved in vacuolar biogenesis.  go_component plant-type vacuole membrane|GO:0009705|12589039|IDA  go_process vacuole organization|GO:0007033|12589039|TAS  go_process protein secretion|GO:0009306||ISS  go_function protein transporter activity|GO:0008565||ISS  product vacuolar protein sorting protein, putative  note ATVPS33; FUNCTIONS IN: protein transporter activity; INVOLVED IN: vacuole organization, protein secretion; LOCATED IN: plant-type vacuole membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); BEST Arabidopsis thaliana protein match is: VPS45 (VACUOLAR PROTEIN SORTING 45); protein transporter (TAIR:AT1G77140.1); Has 1277 Blast hits to 1259 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 645; Fungi - 277; Plants - 92; Viruses - 0; Other Eukaryotes - 263 (source: NCBI BLink).  protein_id AT3G54860.1p  transcript_id AT3G54860.1  protein_id AT3G54860.1p  transcript_id AT3G54860.1  
At3g54860	chr3:020329789	0.0	C/20329789-20329841,20329664-20329703,20329303-20329383,20329026-20329220,20328811-20328921,20328635-20328700,20328456-20328563,20328307-20328351,20327960-20328016,20327475-20327569,20327334-20327381,20327157-20327208,20327022-20327075,20326750-20326812,20326535-20326641,20326242-20326364,20326067-20326148,20325887-20325957,20325248-20325328,20324826-20324883,20324670-20324722,20324468-20324561,20324286-20324375	AT3G54860.2  CDS  gene_syn ATVPS33, VACUOLAR PROTEIN SORTING 33, VPS33  gene ATVPS33  function Homologous to yeast VPS33. Forms a complex with VCL1 and AtVPS11. Involved in vacuolar biogenesis.  go_component plant-type vacuole membrane|GO:0009705|12589039|IDA  go_process vacuole organization|GO:0007033|12589039|TAS  go_process protein secretion|GO:0009306||ISS  go_function protein transporter activity|GO:0008565||ISS  product vacuolar protein sorting protein, putative  note ATVPS33; FUNCTIONS IN: protein transporter activity; INVOLVED IN: vacuole organization, protein secretion; LOCATED IN: plant-type vacuole membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); BEST Arabidopsis thaliana protein match is: VPS45 (VACUOLAR PROTEIN SORTING 45); protein transporter (TAIR:AT1G77140.1).  protein_id AT3G54860.2p  transcript_id AT3G54860.2  protein_id AT3G54860.2p  transcript_id AT3G54860.2  
At3g54870	chr3:020330806	0.0	W/20330806-20331106,20331314-20331414,20331510-20331632,20331722-20331907,20332031-20332252,20332352-20332490,20332576-20332725,20332862-20332950,20333114-20333326,20333434-20333568,20333779-20333958,20334052-20334231,20334373-20334492,20334607-20334735,20334815-20334950,20335053-20335145,20335235-20335360,20335621-20335823	AT3G54870.1  CDS  gene_syn ARK1, CA-ROP2 ENHANCER 1, CAE1, MORPHOGENESIS OF ROOT HAIR 2, MRH2  gene MRH2  function Armadillo-repeat containing kinesin-related protein. Plays a role during transition to root-hair tip growth.Mutants have short, branched root hairs and an excess of endoplasmic microtubles. Phenotype suggests ARK1 plays a role in modulating microtubule depolymerization during root hair tip growth.  go_component microtubule associated complex|GO:0005875||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of microtubule polymerization or depolymerization|GO:0031110|17971038|IMP  go_process root hair cell differentiation|GO:0048765|16367956|IMP  go_process root hair cell tip growth|GO:0048768|17957256|IMP  go_process root hair cell tip growth|GO:0048768|17971038|IMP  go_function microtubule motor activity|GO:0003777||ISS  go_function actin binding|GO:0003779|17957256|IDA  go_function microtubule binding|GO:0008017|17957256|IDA  product MRH2 (MORPHOGENESIS OF ROOT HAIR 2); actin binding / microtubule binding / microtubule motor  note MORPHOGENESIS OF ROOT HAIR 2 (MRH2); FUNCTIONS IN: microtubule binding, actin binding, microtubule motor activity; INVOLVED IN: root hair cell tip growth, root hair cell differentiation, regulation of microtubule polymerization or depolymerization; LOCATED IN: microtubule associated complex, chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ARK3 (ARMADILLO REPEAT KINESIN 3); ATP binding / binding / microtubule motor (TAIR:AT1G12430.1); Has 114127 Blast hits to 58890 proteins in 1965 species: Archae - 814; Bacteria - 10835; Metazoa - 54251; Fungi - 7726; Plants - 4108; Viruses - 369; Other Eukaryotes - 36024 (source: NCBI BLink).  protein_id AT3G54870.1p  transcript_id AT3G54870.1  protein_id AT3G54870.1p  transcript_id AT3G54870.1  
At3g54880	chr3:020337657	0.0	C/20337657-20337786,20337400-20337487,20337228-20337294,20337078-20337131	AT3G54880.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25360.1); Has 72 Blast hits to 72 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G54880.1p  transcript_id AT3G54880.1  protein_id AT3G54880.1p  transcript_id AT3G54880.1  
At3g54890	chr3:020340732	0.0	C/20340732-20340922,20340316-20340418,20339881-20340228	AT3G54890.4  CDS  gene_syn LHCA1, LHCI-730  gene LHCA1  function Encodes a component of the light harvesting complex associated with photosystem I.  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_component light-harvesting complex|GO:0030076||ISS  go_process response to blue light|GO:0009637|18820083|IEP  go_process photosynthesis, light harvesting in photosystem I|GO:0009768|16098971|IMP  go_process response to red light|GO:0010114|18820083|IEP  go_process response to far red light|GO:0010218|18820083|IEP  go_process photosynthesis|GO:0015979||ISS  go_function chlorophyll binding|GO:0016168||ISS  product LHCA1; chlorophyll binding  note LHCA1; FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light, photosynthesis, light harvesting in photosystem I, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast thylakoid membrane, chloroplast, plastoglobule, membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: LHCB4.3 (light harvesting complex PSII); chlorophyll binding (TAIR:AT2G40100.1); Has 1630 Blast hits to 1562 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1432; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink).  protein_id AT3G54890.4p  transcript_id AT3G54890.4  protein_id AT3G54890.4p  transcript_id AT3G54890.4  
At3g54890	chr3:020340732	0.0	C/20340732-20340922,20340316-20340418,20339940-20340228,20339706-20339848	AT3G54890.1  CDS  gene_syn LHCA1, LHCI-730  gene LHCA1  function Encodes a component of the light harvesting complex associated with photosystem I.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_component light-harvesting complex|GO:0030076||ISS  go_process response to blue light|GO:0009637|18820083|IEP  go_process photosynthesis, light harvesting in photosystem I|GO:0009768|16098971|IMP  go_process response to red light|GO:0010114|18820083|IEP  go_process response to far red light|GO:0010218|18820083|IEP  go_process photosynthesis|GO:0015979||ISS  go_function chlorophyll binding|GO:0016168||ISS  product LHCA1; chlorophyll binding  note LHCA1; FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light, photosynthesis, light harvesting in photosystem I, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: LHCB4.2 (light harvesting complex PSII); chlorophyll binding (TAIR:AT3G08940.2); Has 1794 Blast hits to 1712 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1512; Viruses - 0; Other Eukaryotes - 280 (source: NCBI BLink).  protein_id AT3G54890.1p  transcript_id AT3G54890.1  protein_id AT3G54890.1p  transcript_id AT3G54890.1  
At3g54890	chr3:020340732	0.0	C/20340732-20340922,20340316-20340418,20340070-20340228,20339940-20339967,20339706-20339848	AT3G54890.2  CDS  gene_syn LHCA1, LHCI-730  gene LHCA1  function Encodes a component of the light harvesting complex associated with photosystem I.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_component light-harvesting complex|GO:0030076||ISS  go_process response to blue light|GO:0009637|18820083|IEP  go_process photosynthesis, light harvesting in photosystem I|GO:0009768|16098971|IMP  go_process response to red light|GO:0010114|18820083|IEP  go_process response to far red light|GO:0010218|18820083|IEP  go_process photosynthesis|GO:0015979||ISS  go_function chlorophyll binding|GO:0016168||ISS  product LHCA1; chlorophyll binding  note LHCA1; FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light, photosynthesis, light harvesting in photosystem I, photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: LHCA6; chlorophyll binding (TAIR:AT1G19150.1); Has 1659 Blast hits to 1593 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1469; Viruses - 0; Other Eukaryotes - 188 (source: NCBI BLink).  protein_id AT3G54890.2p  transcript_id AT3G54890.2  protein_id AT3G54890.2p  transcript_id AT3G54890.2  
At3g54890	chr3:020340732	0.0	C/20340732-20340922,20340316-20340418,20340082-20340228,20339961-20340014	AT3G54890.3  CDS  gene_syn LHCA1, LHCI-730  gene LHCA1  function Encodes a component of the light harvesting complex associated with photosystem I.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_component light-harvesting complex|GO:0030076||ISS  go_process response to blue light|GO:0009637|18820083|IEP  go_process photosynthesis, light harvesting in photosystem I|GO:0009768|16098971|IMP  go_process response to red light|GO:0010114|18820083|IEP  go_process response to far red light|GO:0010218|18820083|IEP  go_process photosynthesis|GO:0015979||ISS  go_function chlorophyll binding|GO:0016168||ISS  product LHCA1; chlorophyll binding  note LHCA1; FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light, photosynthesis, light harvesting in photosystem I, photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: LHCA6; chlorophyll binding (TAIR:AT1G19150.1); Has 1375 Blast hits to 1320 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1212; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink).  protein_id AT3G54890.3p  transcript_id AT3G54890.3  protein_id AT3G54890.3p  transcript_id AT3G54890.3  
At3g54900	chr3:020341850	0.0	C/20341850-20342371	AT3G54900.1  CDS  gene_syn ATGRXCP, CAX INTERACTING PROTEIN 1, CXIP1, GLUTAREDOXIN  gene CXIP1  function A.thaliana PICOT protein.It activates CAX1 gene Calcium transport activity.In other organisms, PICOT proteins appear to play a negative regulatory role in cellular stress responses.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|16829529|IDA  go_process cation transport|GO:0006812|12480930|IDA  go_function glutathione disulfide oxidoreductase activity|GO:0015038|16829529|IGI  go_function antiporter activity|GO:0015297|12480930|IDA  product CXIP1 (CAX INTERACTING PROTEIN 1); antiporter/ glutathione disulfide oxidoreductase  note CAX INTERACTING PROTEIN 1 (CXIP1); FUNCTIONS IN: antiporter activity, glutathione disulfide oxidoreductase activity; INVOLVED IN: cation transport; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336), Glutaredoxin-related protein (InterPro:IPR004480); BEST Arabidopsis thaliana protein match is: thioredoxin family protein (TAIR:AT4G04950.1); Has 4043 Blast hits to 3902 proteins in 844 species: Archae - 12; Bacteria - 1379; Metazoa - 353; Fungi - 190; Plants - 250; Viruses - 0; Other Eukaryotes - 1859 (source: NCBI BLink).  protein_id AT3G54900.1p  transcript_id AT3G54900.1  protein_id AT3G54900.1p  transcript_id AT3G54900.1  
At3g54910	chr3:020343564	0.0	C/20343564-20344277,20343361-20343501,20342967-20343233	AT3G54910.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G10400.2); Has 661 Blast hits to 647 proteins in 8 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 657; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G54910.1p  transcript_id AT3G54910.1  protein_id AT3G54910.1p  transcript_id AT3G54910.1  
At3g54910	chr3:020343564	0.0	C/20343564-20344277,20343361-20343501,20342967-20343233	AT3G54910.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G10400.2); Has 661 Blast hits to 647 proteins in 8 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 657; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G54910.2p  transcript_id AT3G54910.2  protein_id AT3G54910.2p  transcript_id AT3G54910.2  
At3g54910	chr3:020343564	0.0	C/20343564-20344277,20343361-20343501,20342967-20343233	AT3G54910.3  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G10400.2); Has 661 Blast hits to 647 proteins in 8 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 657; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G54910.3p  transcript_id AT3G54910.3  protein_id AT3G54910.3p  transcript_id AT3G54910.3  
At3g54920	chr3:020345311	0.0	W/20345311-20345447,20345530-20346430,20347001-20347209,20348219-20348477	AT3G54920.1  CDS  gene_syn PMR6, powdery mildew resistant 6  gene PMR6  function Powdery mildew resistant mutant encodes a pectate lyase-like protein  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_component anchored to plasma membrane|GO:0046658|12215508|ISS  go_process defense response, incompatible interaction|GO:0009814|12215508|IMP  go_process cell wall modification during multidimensional cell growth|GO:0042547|12215508|IMP  go_function lyase activity|GO:0016829||ISS  go_function pectate lyase activity|GO:0030570|12215508|ISS  go_function pectate lyase activity|GO:0030570||ISS  product PMR6 (powdery mildew resistant 6); lyase/ pectate lyase  note powdery mildew resistant 6 (PMR6); FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: cell wall modification during multidimensional cell growth, defense response, incompatible interaction; LOCATED IN: anchored to plasma membrane, anchored to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectate lyase family protein (TAIR:AT5G04310.1); Has 1942 Blast hits to 1741 proteins in 295 species: Archae - 3; Bacteria - 668; Metazoa - 330; Fungi - 289; Plants - 498; Viruses - 6; Other Eukaryotes - 148 (source: NCBI BLink).  protein_id AT3G54920.1p  transcript_id AT3G54920.1  protein_id AT3G54920.1p  transcript_id AT3G54920.1  
At3g54925	chr3:020349539	0.0	C/20349539-20349952	AT3G54925.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55254.1); Has 68 Blast hits to 65 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G54925.1p  transcript_id AT3G54925.1  protein_id AT3G54925.1p  transcript_id AT3G54925.1  
At3g54930	chr3:020351472	0.0	C/20351472-20352659,20351084-20351389	AT3G54930.1  CDS  gene_syn T15C9.2  go_component protein phosphatase type 2A complex|GO:0000159||IEA  go_component chloroplast|GO:0009507||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein phosphatase type 2A regulator activity|GO:0008601||IEA  go_component protein phosphatase type 2A complex|GO:0000159||ISS  go_process signal transduction|GO:0007165||ISS  go_function protein phosphatase type 2A regulator activity|GO:0008601||ISS  product serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B , putative  note serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B , putative; FUNCTIONS IN: protein phosphatase type 2A regulator activity; INVOLVED IN: signal transduction; LOCATED IN: chloroplast, protein phosphatase type 2A complex; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2A, regulatory B subunit, B56 (InterPro:IPR002554); BEST Arabidopsis thaliana protein match is: ATB  BETA; protein phosphatase type 2A regulator (TAIR:AT3G09880.1); Has 896 Blast hits to 891 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 495; Fungi - 97; Plants - 156; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink).  protein_id AT3G54930.1p  transcript_id AT3G54930.1  protein_id AT3G54930.1p  transcript_id AT3G54930.1  
At3g54940	chr3:020354402	0.0	W/20354402-20354866,20355299-20355418,20355508-20355751,20355853-20356127	AT3G54940.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product cysteine-type endopeptidase/ cysteine-type peptidase  note cysteine-type endopeptidase/ cysteine-type peptidase; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, sepal, carpel; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: cysteine proteinase A494, putative / thiol protease, putative (TAIR:AT2G21430.1); Has 4307 Blast hits to 4303 proteins in 494 species: Archae - 13; Bacteria - 22; Metazoa - 1920; Fungi - 0; Plants - 1027; Viruses - 110; Other Eukaryotes - 1215 (source: NCBI BLink).  protein_id AT3G54940.2p  transcript_id AT3G54940.2  protein_id AT3G54940.2p  transcript_id AT3G54940.2  
At3g54950	chr3:020359623	0.0	C/20359623-20360774,20359076-20359390	AT3G54950.1  CDS  gene_syn PATATIN-LIKE PROTEIN 6, PATATIN-LIKE PROTEIN 7, PLA IIIA, PLP7, T15C9.3  gene PLA IIIA  go_process response to other organism|GO:0051707|16297072|IEP  product PLA IIIA (PATATIN-LIKE PROTEIN 6)  note PATATIN-LIKE PROTEIN 6 (PLA IIIA); INVOLVED IN: response to other organism; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: PLP6 (PATATIN-LIKE PROTEIN 6); nutrient reservoir (TAIR:AT2G39220.1); Has 702 Blast hits to 700 proteins in 137 species: Archae - 0; Bacteria - 219; Metazoa - 22; Fungi - 24; Plants - 308; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).  protein_id AT3G54950.1p  transcript_id AT3G54950.1  protein_id AT3G54950.1p  transcript_id AT3G54950.1  
At3g54960	chr3:020366248	0.0	C/20366248-20366822,20365844-20365973,20365303-20365468,20365099-20365217,20364931-20365011,20364667-20364753,20364474-20364548,20364316-20364384,20364162-20364242,20363895-20364068	AT3G54960.2  CDS  gene_syn ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, ATPDI1, ATPDIL1-3, PDI-LIKE 1-3, PDI1, PROTEIN DISULFIDE ISOMERASE 1, T15C9.4  gene ATPDIL1-3  function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process response to endoplasmic reticulum stress|GO:0034976|18574595|IEP  go_function protein disulfide isomerase activity|GO:0003756|18574595|ISS  product ATPDIL1-3 (PDI-LIKE 1-3); protein disulfide isomerase  note PDI-LIKE 1-3 (ATPDIL1-3); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: response to endoplasmic reticulum stress; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Protein disulphide isomerase (InterPro:IPR005792), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATPDIL1-4 (PDI-LIKE 1-4); protein disulfide isomerase (TAIR:AT5G60640.2); Has 1804 Blast hits to 1243 proteins in 238 species: Archae - 8; Bacteria - 516; Metazoa - 1006; Fungi - 110; Plants - 84; Viruses - 1; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT3G54960.2p  transcript_id AT3G54960.2  protein_id AT3G54960.2p  transcript_id AT3G54960.2  
At3g54960	chr3:020366248	0.0	C/20366248-20366822,20365844-20365973,20365303-20365468,20365099-20365217,20364931-20365011,20364667-20364753,20364474-20364548,20364316-20364384,20364162-20364242,20363934-20364068,20363788-20363844,20363514-20363678	AT3G54960.1  CDS  gene_syn ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, ATPDI1, ATPDIL1-3, PDI-LIKE 1-3, PDI1, PROTEIN DISULFIDE ISOMERASE 1, T15C9.4  gene ATPDIL1-3  function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process response to endoplasmic reticulum stress|GO:0034976|18574595|IEP  go_function protein disulfide isomerase activity|GO:0003756|18574595|ISS  product ATPDIL1-3 (PDI-LIKE 1-3); protein disulfide isomerase  note PDI-LIKE 1-3 (ATPDIL1-3); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: response to endoplasmic reticulum stress; LOCATED IN: endoplasmic reticulum, plasma membrane, chloroplast; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Disulphide isomerase (InterPro:IPR005788), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Protein disulphide isomerase (InterPro:IPR005792), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATPDIL1-4 (PDI-LIKE 1-4); protein disulfide isomerase (TAIR:AT5G60640.1); Has 18341 Blast hits to 12098 proteins in 1676 species: Archae - 137; Bacteria - 7011; Metazoa - 4075; Fungi - 1057; Plants - 1340; Viruses - 11; Other Eukaryotes - 4710 (source: NCBI BLink).  protein_id AT3G54960.1p  transcript_id AT3G54960.1  protein_id AT3G54960.1p  transcript_id AT3G54960.1  
At3g54970	chr3:020369989	0.0	C/20369989-20370070,20369447-20369912,20369195-20369312,20368939-20369048,20368768-20368853,20368500-20368645,20368329-20368382	AT3G54970.1  CDS  gene_syn T15C9.1  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  product catalytic  note catalytic; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544); Has 61 Blast hits to 61 proteins in 29 species: Archae - 0; Bacteria - 29; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT3G54970.1p  transcript_id AT3G54970.1  protein_id AT3G54970.1p  transcript_id AT3G54970.1  
At3g54970	chr3:020369989	0.0	C/20369989-20370070,20369447-20369912,20369195-20369312,20368939-20369048,20368768-20368853,20368573-20368625	AT3G54970.2  CDS  gene_syn T15C9.1  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  product catalytic  note catalytic; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544); Has 25 Blast hits to 25 proteins in 11 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G54970.2p  transcript_id AT3G54970.2  protein_id AT3G54970.2p  transcript_id AT3G54970.2  
At3g54980	chr3:020370293	0.0	W/20370293-20372848	AT3G54980.1  CDS  gene_syn T15C9.5  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G39230.1); Has 28127 Blast hits to 6106 proteins in 192 species: Archae - 5; Bacteria - 29; Metazoa - 1019; Fungi - 863; Plants - 24710; Viruses - 0; Other Eukaryotes - 1501 (source: NCBI BLink).  protein_id AT3G54980.1p  transcript_id AT3G54980.1  protein_id AT3G54980.1p  transcript_id AT3G54980.1  
At3g54990	chr3:020376104	0.0	C/20376104-20376522,20375964-20375989,20375582-20375612,20375349-20375436,20375036-20375215	AT3G54990.2  CDS  gene_syn SCHLAFMUTZE, SMZ, T15C9.6  gene SMZ  function Encodes a AP2 domain transcription factor that can repress flowering. SMZ and its paralogous gene, SNARCHZAPFEN (SNZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering.  go_component nucleus|GO:0005634|10948255|IC  go_component nucleus|GO:0005634|7919989|TAS  go_process regulation of transcription, DNA-dependent|GO:0006355|7756828|TAS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process multicellular organismal development|GO:0007275|9192694|ISS  go_process negative regulation of flower development|GO:0009910|14573523|IMP  go_function DNA binding|GO:0003677|7756828|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|7919989|TAS  go_function transcription factor activity|GO:0003700||ISS  product SMZ (SCHLAFMUTZE); DNA binding / transcription factor  note SCHLAFMUTZE (SMZ); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: multicellular organismal development, negative regulation of flower development, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: SNZ (SCHNARCHZAPFEN); DNA binding / transcription factor (TAIR:AT2G39250.1); Has 3045 Blast hits to 2698 proteins in 176 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 0; Plants - 2976; Viruses - 11; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT3G54990.2p  transcript_id AT3G54990.2  protein_id AT3G54990.2p  transcript_id AT3G54990.2  
At3g54990	chr3:020376104	0.0	C/20376104-20376522,20375964-20375989,20375582-20375612,20375349-20375436,20375067-20375215,20374180-20374259,20373718-20373965	AT3G54990.1  CDS  gene_syn SCHLAFMUTZE, SMZ, T15C9.6  gene SMZ  function Encodes a AP2 domain transcription factor that can repress flowering. SMZ and its paralogous gene, SNARCHZAPFEN (SNZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering.  go_component nucleus|GO:0005634|10948255|IC  go_component nucleus|GO:0005634|7919989|TAS  go_process regulation of transcription, DNA-dependent|GO:0006355|7756828|TAS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process multicellular organismal development|GO:0007275|9192694|ISS  go_process negative regulation of flower development|GO:0009910|14573523|IMP  go_function DNA binding|GO:0003677|7756828|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|7919989|TAS  go_function transcription factor activity|GO:0003700||ISS  product SMZ (SCHLAFMUTZE); DNA binding / transcription factor  note SCHLAFMUTZE (SMZ); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: multicellular organismal development, negative regulation of flower development, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: SNZ (SCHNARCHZAPFEN); DNA binding / transcription factor (TAIR:AT2G39250.1); Has 3022 Blast hits to 2717 proteins in 176 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 0; Plants - 2948; Viruses - 11; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT3G54990.1p  transcript_id AT3G54990.1  protein_id AT3G54990.1p  transcript_id AT3G54990.1  
At3g55000	chr3:020381612	0.0	W/20381612-20381698,20381892-20382024,20382130-20382218,20382321-20382443,20382944-20383068,20383162-20383187,20383283-20383439,20383535-20383577	AT3G55000.1  CDS  gene_syn T15C9.7, TON1, TON1A, TONNEAU 1  gene TON1A  function Encodes a protein of unknown function that is involved in cortical microtubule organization. Mutants exhibit abnormal cell growth and patterns of division. TON1A can functionally complement TON1B and their roles appear to be redundant in plants. Encodes a novel protein that is similar to human FOP and OFD1 centrosomal proteins. Localizes to the preprophase band, cytoplasm and cell cortex where it is probably associated with the cortical cytoskeleton. TON1A associates with plant centrins CEN1 and CEN2.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytoplasm|GO:0005737|18757558|IDA  go_component microsome|GO:0005792||NAS  go_component cell cortex|GO:0005938|18757558|IDA  go_component preprophase band|GO:0009574|18757558|IDA  go_component cortical cytoskeleton|GO:0030863|18757558|IDA  go_process microtubule cytoskeleton organization|GO:0000226||NAS  product TON1A (TONNEAU 1)  note TONNEAU 1 (TON1A); INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif (InterPro:IPR006594); BEST Arabidopsis thaliana protein match is: TON1B (tonneau 1b) (TAIR:AT3G55005.1); Has 170 Blast hits to 167 proteins in 51 species: Archae - 0; Bacteria - 2; Metazoa - 96; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT3G55000.1p  transcript_id AT3G55000.1  protein_id AT3G55000.1p  transcript_id AT3G55000.1  
At3g55005	chr3:020384131	0.0	W/20384131-20384217,20384526-20384658,20384924-20385012,20385117-20385239,20385681-20385805,20385892-20386062,20386148-20386193	AT3G55005.1  CDS  gene_syn TON1B, tonneau 1b  gene TON1B  function Encodes a protein of unknown function that is involved in cortical microtubule organization. Mutants exhibit abnormal cell growth and patterns of division. TON1B appears to be redundant with TON1A. Encodes a novel protein that is similar to human FOP and OFD1 centrosomal proteins. Localizes to the preprophase band, cytoplasm and cell cortex where it is probably associated with the cortical cytoskeleton. TON1B associates with plant centrin CEN1.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component microsome|GO:0005792||NAS  go_process microtubule cytoskeleton organization|GO:0000226||NAS  go_function molecular_function|GO:0003674||ND  product TON1B (tonneau 1b)  note tonneau 1b (TON1B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: plasma membrane, microsome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif (InterPro:IPR006594); BEST Arabidopsis thaliana protein match is: TON1A (TONNEAU 1) (TAIR:AT3G55000.1); Has 159 Blast hits to 157 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 92; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT3G55005.1p  transcript_id AT3G55005.1  protein_id AT3G55005.1p  transcript_id AT3G55005.1  
At3g55010	chr3:020386818	0.0	W/20386818-20387121,20387208-20387302,20387374-20387475,20387559-20387618,20387701-20387873,20387947-20388049,20388133-20388291,20388376-20388549	AT3G55010.1  CDS  gene_syn ATPURM, PUR5  gene PUR5  function encoding phosphoribosylformylglycinamidine cyclo-ligase (syn. AIR synthetase)that phosphorylates 5-phosphoribosyl-N-formylglycinamidine (FGAM) to form 5-aminoimidazole ribonucleotide (AIR)  go_component mitochondrion|GO:0005739|17137349|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_function ATP binding|GO:0005524|17137349|IDA  go_process purine nucleotide biosynthetic process|GO:0006164|7920700|IGI  go_process purine nucleotide biosynthetic process|GO:0006164|8108507|IGI  go_function phosphoribosylformylglycinamidine cyclo-ligase activity|GO:0004641|7920700|IGI  go_function phosphoribosylformylglycinamidine cyclo-ligase activity|GO:0004641|8108507|IGI  go_function phosphoribosylformylglycinamidine cyclo-ligase activity|GO:0004641||ISS  product PUR5; ATP binding / phosphoribosylformylglycinamidine cyclo-ligase  note PUR5; FUNCTIONS IN: phosphoribosylformylglycinamidine cyclo-ligase activity, ATP binding; INVOLVED IN: purine nucleotide biosynthetic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PurM, N-terminal-like (InterPro:IPR016188), AIR synthase related protein (InterPro:IPR000728), AIR synthase related protein, C-terminal (InterPro:IPR010918), Phosphoribosylformylglycinamidine cyclo-ligase (InterPro:IPR004733); Has 6475 Blast hits to 6437 proteins in 1446 species: Archae - 232; Bacteria - 2956; Metazoa - 197; Fungi - 90; Plants - 37; Viruses - 2; Other Eukaryotes - 2961 (source: NCBI BLink).  protein_id AT3G55010.1p  transcript_id AT3G55010.1  protein_id AT3G55010.1p  transcript_id AT3G55010.1  
At3g55010	chr3:020386818	0.0	W/20386818-20387121,20387208-20387302,20387374-20387475,20387559-20387618,20387701-20387873,20387947-20388049,20388133-20388291,20388376-20388549	AT3G55010.2  CDS  gene_syn ATPURM, PUR5  gene PUR5  function encoding phosphoribosylformylglycinamidine cyclo-ligase (syn. AIR synthetase)that phosphorylates 5-phosphoribosyl-N-formylglycinamidine (FGAM) to form 5-aminoimidazole ribonucleotide (AIR)  go_component mitochondrion|GO:0005739|17137349|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_function ATP binding|GO:0005524|17137349|IDA  go_process purine nucleotide biosynthetic process|GO:0006164|7920700|IGI  go_process purine nucleotide biosynthetic process|GO:0006164|8108507|IGI  go_function phosphoribosylformylglycinamidine cyclo-ligase activity|GO:0004641|7920700|IGI  go_function phosphoribosylformylglycinamidine cyclo-ligase activity|GO:0004641|8108507|IGI  go_function phosphoribosylformylglycinamidine cyclo-ligase activity|GO:0004641||ISS  product PUR5; ATP binding / phosphoribosylformylglycinamidine cyclo-ligase  note PUR5; FUNCTIONS IN: phosphoribosylformylglycinamidine cyclo-ligase activity, ATP binding; INVOLVED IN: purine nucleotide biosynthetic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PurM, N-terminal-like (InterPro:IPR016188), AIR synthase related protein (InterPro:IPR000728), AIR synthase related protein, C-terminal (InterPro:IPR010918), Phosphoribosylformylglycinamidine cyclo-ligase (InterPro:IPR004733); Has 6475 Blast hits to 6437 proteins in 1446 species: Archae - 232; Bacteria - 2956; Metazoa - 197; Fungi - 90; Plants - 37; Viruses - 2; Other Eukaryotes - 2961 (source: NCBI BLink).  protein_id AT3G55010.2p  transcript_id AT3G55010.2  protein_id AT3G55010.2p  transcript_id AT3G55010.2  
At3g55020	chr3:020394631	0.0	C/20394631-20394713,20394097-20394166,20393204-20393806,20392903-20393082,20392682-20392795,20392506-20392564,20392065-20392131,20391923-20391974,20391747-20391839,20391503-20391586,20390983-20391389,20390767-20390828,20390588-20390657,20390231-20390311,20390044-20390145,20389647-20389771,20389415-20389482,20389278-20389291	AT3G55020.1  CDS  go_process regulation of Rab GTPase activity|GO:0032313||IEA  go_function RAB GTPase activator activity|GO:0005097||IEA  go_component cytosol|GO:0005829|18433157|IDA  product RabGAP/TBC domain-containing protein  note RabGAP/TBC domain-containing protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: RAB GTPase activator (TAIR:AT2G39280.1); Has 6656 Blast hits to 6055 proteins in 369 species: Archae - 11; Bacteria - 418; Metazoa - 3748; Fungi - 845; Plants - 321; Viruses - 33; Other Eukaryotes - 1280 (source: NCBI BLink).  protein_id AT3G55020.1p  transcript_id AT3G55020.1  protein_id AT3G55020.1p  transcript_id AT3G55020.1  
At3g55030	chr3:020396860	0.0	W/20396860-20397040,20397349-20397446,20397527-20397577,20397676-20397789,20397877-20397933,20398024-20398224	AT3G55030.1  CDS  gene_syn PGPS2, phosphatidylglycerolphosphate synthase 2  gene PGPS2  function Encodes a phosphatidylglycerolphosphate synthase.  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_process phospholipid biosynthetic process|GO:0008654||IEA  go_component microsome|GO:0005792|11741606|IDA  go_function CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity|GO:0008444|11741606|IDA  go_function CDP-alcohol phosphatidyltransferase activity|GO:0017169||ISS  product PGPS2 (phosphatidylglycerolphosphate synthase 2); CDP-alcohol phosphatidyltransferase/ CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase  note phosphatidylglycerolphosphate synthase 2 (PGPS2); FUNCTIONS IN: CDP-alcohol phosphatidyltransferase activity, CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity; INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: microsome, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (InterPro:IPR004570), CDP-alcohol phosphatidyltransferase (InterPro:IPR000462); BEST Arabidopsis thaliana protein match is: PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1); CDP-alcohol phosphatidyltransferase/ CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase (TAIR:AT2G39290.1); Has 5257 Blast hits to 5257 proteins in 1276 species: Archae - 0; Bacteria - 2659; Metazoa - 104; Fungi - 77; Plants - 61; Viruses - 0; Other Eukaryotes - 2356 (source: NCBI BLink).  protein_id AT3G55030.1p  transcript_id AT3G55030.1  protein_id AT3G55030.1p  transcript_id AT3G55030.1  
At3g55040	chr3:020400121	0.0	C/20400121-20400305,20399981-20400040,20399822-20399882,20399657-20399743,20399477-20399575,20399275-20399377,20399108-20399184,20398913-20399020,20398718-20398816	AT3G55040.1  CDS  gene_syn GSTL2  gene GSTL2  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  product GSTL2  note GSTL2; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: In2-1 protein, putative (TAIR:AT5G02790.1); Has 1880 Blast hits to 1846 proteins in 386 species: Archae - 0; Bacteria - 527; Metazoa - 334; Fungi - 60; Plants - 694; Viruses - 0; Other Eukaryotes - 265 (source: NCBI BLink).  protein_id AT3G55040.1p  transcript_id AT3G55040.1  protein_id AT3G55040.1p  transcript_id AT3G55040.1  
At3g55050	chr3:020400990	0.0	C/20400990-20401922,20400669-20400890	AT3G55050.1  CDS  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product serine/threonine protein phosphatase 2C (PP2C6)  note serine/threonine protein phosphatase 2C (PP2C6); FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C family protein / PP2C family protein (TAIR:AT3G12620.2); Has 3613 Blast hits to 3612 proteins in 213 species: Archae - 0; Bacteria - 4; Metazoa - 1244; Fungi - 391; Plants - 1257; Viruses - 0; Other Eukaryotes - 717 (source: NCBI BLink).  protein_id AT3G55050.1p  transcript_id AT3G55050.1  protein_id AT3G55050.1p  transcript_id AT3G55050.1  
At3g55050	chr3:020400990	0.0	C/20400990-20401922,20400669-20400890	AT3G55050.2  CDS  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product serine/threonine protein phosphatase 2C (PP2C6)  note serine/threonine protein phosphatase 2C (PP2C6); FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C family protein / PP2C family protein (TAIR:AT3G12620.2); Has 3613 Blast hits to 3612 proteins in 213 species: Archae - 0; Bacteria - 4; Metazoa - 1244; Fungi - 391; Plants - 1257; Viruses - 0; Other Eukaryotes - 717 (source: NCBI BLink).  protein_id AT3G55050.2p  transcript_id AT3G55050.2  protein_id AT3G55050.2p  transcript_id AT3G55050.2  
At3g55060	chr3:020405936	0.0	C/20405936-20406222,20403917-20405810,20403598-20403804,20403189-20403491	AT3G55060.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G39300.1); Has 49477 Blast hits to 26239 proteins in 1256 species: Archae - 559; Bacteria - 3722; Metazoa - 27620; Fungi - 3642; Plants - 1692; Viruses - 190; Other Eukaryotes - 12052 (source: NCBI BLink).  protein_id AT3G55060.1p  transcript_id AT3G55060.1  protein_id AT3G55060.1p  transcript_id AT3G55060.1  
At3g55070	chr3:020408377	0.0	W/20408377-20408697,20409059-20409253,20409428-20409550,20409695-20409889,20410160-20410293,20410436-20410622,20410786-20410887	AT3G55070.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), CT11-RanBPM (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G37880.1); Has 669 Blast hits to 649 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 334; Fungi - 200; Plants - 87; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT3G55070.1p  transcript_id AT3G55070.1  protein_id AT3G55070.1p  transcript_id AT3G55070.1  
At3g55070	chr3:020408377	0.0	W/20408377-20408697,20409059-20409253,20409428-20409550,20409695-20409889,20410160-20410297	AT3G55070.2  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), CT11-RanBPM (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G37880.1); Has 611 Blast hits to 608 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 313; Fungi - 169; Plants - 83; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT3G55070.2p  transcript_id AT3G55070.2  protein_id AT3G55070.2p  transcript_id AT3G55070.2  
At3g55080	chr3:020414554	0.0	C/20414554-20414595,20414392-20414451,20414041-20414148,20413482-20413554,20413303-20413343,20413138-20413218,20412827-20412877,20412582-20412665,20412266-20412399,20411946-20412034,20411715-20411863,20411476-20411625	AT3G55080.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SET domain-containing protein  note SET domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: SET domain-containing protein (TAIR:AT3G07670.1); Has 692 Blast hits to 692 proteins in 134 species: Archae - 0; Bacteria - 0; Metazoa - 217; Fungi - 180; Plants - 187; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT3G55080.2p  transcript_id AT3G55080.2  protein_id AT3G55080.2p  transcript_id AT3G55080.2  
At3g55080	chr3:020415714	0.0	C/20415714-20415830,20415291-20415385,20414769-20414832,20414554-20414664,20414392-20414451,20414041-20414148,20413482-20413554,20413303-20413343,20413138-20413218,20412827-20412862,20412582-20412665,20412266-20412399,20411946-20412034,20411715-20411863,20411476-20411625	AT3G55080.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SET domain-containing protein  note SET domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: SET domain-containing protein (TAIR:AT3G07670.1); Has 740 Blast hits to 740 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 220; Fungi - 201; Plants - 207; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).  protein_id AT3G55080.1p  transcript_id AT3G55080.1  protein_id AT3G55080.1p  transcript_id AT3G55080.1  
At3g55090	chr3:020416342	0.0	C/20416342-20418552	AT3G55090.1  CDS  go_component membrane|GO:0016020||IEA  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ATPase, coupled to transmembrane movement of substances  note ATPase, coupled to transmembrane movement of substances; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: response to cyclopentenone; LOCATED IN: membrane; EXPRESSED IN: sepal, flower, root, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT2G39350.1); Has 224110 Blast hits to 205285 proteins in 2634 species: Archae - 4189; Bacteria - 156088; Metazoa - 7361; Fungi - 4084; Plants - 2674; Viruses - 9; Other Eukaryotes - 49705 (source: NCBI BLink).  protein_id AT3G55090.1p  transcript_id AT3G55090.1  protein_id AT3G55090.1p  transcript_id AT3G55090.1  
At3g55100	chr3:020420352	0.0	C/20420352-20422340	AT3G55100.1  CDS  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ABC transporter family protein  note ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: membrane; EXPRESSED IN: leaf whorl, petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 (InterPro:IPR000412), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT3G55110.1); Has 231988 Blast hits to 211467 proteins in 2645 species: Archae - 4320; Bacteria - 159529; Metazoa - 7713; Fungi - 4310; Plants - 2734; Viruses - 12; Other Eukaryotes - 53370 (source: NCBI BLink).  protein_id AT3G55100.1p  transcript_id AT3G55100.1  protein_id AT3G55100.1p  transcript_id AT3G55100.1  
At3g55110	chr3:020424766	0.0	C/20424766-20426892	AT3G55110.1  CDS  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ABC transporter family protein  note ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 (InterPro:IPR000412), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATWBC19 (White-Brown Complex homolog 19); ATPase, coupled to transmembrane movement of substances (TAIR:AT3G55130.1); Has 227231 Blast hits to 207994 proteins in 2641 species: Archae - 4288; Bacteria - 157682; Metazoa - 7085; Fungi - 4180; Plants - 2671; Viruses - 12; Other Eukaryotes - 51313 (source: NCBI BLink).  protein_id AT3G55110.1p  transcript_id AT3G55110.1  protein_id AT3G55110.1p  transcript_id AT3G55110.1  
At3g55120	chr3:020431283	0.0	C/20431283-20431415,20431041-20431199,20430718-20430941,20430248-20430472	AT3G55120.1  CDS  gene_syn A11, CFI, CHALCONE FLAVANONE ISOMERASE, CHI, TRANSPARENT TESTA 5, TT5  gene TT5  function Catalyzes the conversion of chalcones into flavanones. Required for the accumulation of purple anthocyanins in leaves and stems.  go_component nucleus|GO:0005634|15817473|IDA  go_component endoplasmic reticulum|GO:0005783|11489181|IDA  go_component endoplasmic reticulum|GO:0005783|15817473|IDA  go_component plant-type vacuole membrane|GO:0009705|11489181|IDA  go_component extrinsic to endoplasmic reticulum membrane|GO:0042406|11489181|IDA  go_process response to UV|GO:0009411|8587977|IMP  go_process response to sucrose stimulus|GO:0009744|16384906|IEP  go_process flavonoid biosynthetic process|GO:0009813|1354004|IMP  go_process flavonoid biosynthetic process|GO:0009813|8528278|IMP  go_process response to UV-B|GO:0010224|12271060|IMP  go_function chalcone isomerase activity|GO:0045430|1354004|IMP  product TT5 (TRANSPARENT TESTA 5); chalcone isomerase  note TRANSPARENT TESTA 5 (TT5); FUNCTIONS IN: chalcone isomerase activity; INVOLVED IN: response to UV, response to UV-B, response to sucrose stimulus, flavonoid biosynthetic process; LOCATED IN: plant-type vacuole membrane, extrinsic to endoplasmic reticulum membrane, endoplasmic reticulum, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone isomerase, subgroup (InterPro:IPR003466), Chalcone isomerase, 3-layer sandwich (InterPro:IPR016088), Chalcone isomerase (InterPro:IPR016087); BEST Arabidopsis thaliana protein match is: chalcone isomerase (TAIR:AT5G66220.1); Has 320 Blast hits to 320 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 320; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G55120.1p  transcript_id AT3G55120.1  protein_id AT3G55120.1p  transcript_id AT3G55120.1  
At3g55130	chr3:020434111	0.0	C/20434111-20436288	AT3G55130.1  CDS  gene_syn ATWBC19, White-Brown Complex homolog 19  gene ATWBC19  function Encodes a vacuole localized protein of the ABC transporter White-Brown Complex (WBC) family. When overexpressed in planta, confers resistance to kanamycin.  go_component vacuolar lumen|GO:0005775|16116418|IDA  go_process vacuolar transport|GO:0007034|16116418|IMP  go_process antibiotic transport|GO:0042891|16774843|TAS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ATWBC19 (White-Brown Complex homolog 19); ATPase, coupled to transmembrane movement of substances  note White-Brown Complex homolog 19 (ATWBC19); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: antibiotic transport, vacuolar transport; LOCATED IN: vacuolar lumen; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 (InterPro:IPR000412), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT3G55110.1); Has 229947 Blast hits to 210149 proteins in 2644 species: Archae - 4287; Bacteria - 159361; Metazoa - 7139; Fungi - 4183; Plants - 2676; Viruses - 12; Other Eukaryotes - 52289 (source: NCBI BLink).  protein_id AT3G55130.1p  transcript_id AT3G55130.1  protein_id AT3G55130.1p  transcript_id AT3G55130.1  
At3g55140	chr3:020438819	0.0	W/20438819-20438945,20439115-20439466,20439551-20439761,20439833-20439901,20439989-20440225	AT3G55140.1  CDS  go_function lyase activity|GO:0016829||ISS  go_function pectate lyase activity|GO:0030570||ISS  product pectate lyase family protein  note pectate lyase family protein; FUNCTIONS IN: lyase activity, pectate lyase activity; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectate lyase family protein (TAIR:AT3G09540.1); Has 992 Blast hits to 988 proteins in 172 species: Archae - 0; Bacteria - 486; Metazoa - 0; Fungi - 93; Plants - 380; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT3G55140.1p  transcript_id AT3G55140.1  protein_id AT3G55140.1p  transcript_id AT3G55140.1  
At3g55140	chr3:020439060	0.0	W/20439060-20439466,20439551-20439761,20439833-20439901,20439989-20440225	AT3G55140.2  CDS  go_function lyase activity|GO:0016829||ISS  go_function pectate lyase activity|GO:0030570||ISS  product pectate lyase family protein  note pectate lyase family protein; FUNCTIONS IN: lyase activity, pectate lyase activity; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectate lyase family protein (TAIR:AT3G09540.1); Has 834 Blast hits to 830 proteins in 154 species: Archae - 0; Bacteria - 369; Metazoa - 0; Fungi - 77; Plants - 378; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT3G55140.2p  transcript_id AT3G55140.2  protein_id AT3G55140.2p  transcript_id AT3G55140.2  
At3g55150	chr3:020440655	0.0	C/20440655-20442565	AT3G55150.1  CDS  gene_syn ATEXO70H1, exocyst subunit EXO70 family protein H1  gene ATEXO70H1  function A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.  go_component exocyst|GO:0000145||IEA  go_process exocytosis|GO:0006887||IEA  go_component exocyst|GO:0000145||ISS  go_process vesicle docking during exocytosis|GO:0006904||ISS  go_function protein binding|GO:0005515||ISS  product ATEXO70H1 (exocyst subunit EXO70 family protein H1); protein binding  note exocyst subunit EXO70 family protein H1 (ATEXO70H1); FUNCTIONS IN: protein binding; INVOLVED IN: exocytosis, vesicle docking during exocytosis; LOCATED IN: exocyst; EXPRESSED IN: sperm cell, root, pollen tube; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: ATEXO70H2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H2); protein binding (TAIR:AT2G39380.1); Has 508 Blast hits to 504 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 108; Fungi - 28; Plants - 365; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT3G55150.1p  transcript_id AT3G55150.1  protein_id AT3G55150.1p  transcript_id AT3G55150.1  
At3g55160	chr3:020449757	0.0	C/20449757-20452400,20449179-20449663,20448734-20449002,20448085-20448645,20445724-20447969,20445412-20445656	AT3G55160.1  CDS  product unknown protein  note EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357); Has 244 Blast hits to 237 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 124; Fungi - 72; Plants - 17; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT3G55160.1p  transcript_id AT3G55160.1  protein_id AT3G55160.1p  transcript_id AT3G55160.1  
At3g55170	chr3:020454290	0.0	C/20454290-20454293,20454053-20454188,20453279-20453435,20453136-20453210	AT3G55170.1  CDS  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L35 (RPL35C)  note 60S ribosomal protein L35 (RPL35C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, ribosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L29 (InterPro:IPR001854), Ribosomal protein L29, conserved site (InterPro:IPR018254); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L35 (RPL35A) (TAIR:AT3G09500.1); Has 875 Blast hits to 875 proteins in 318 species: Archae - 116; Bacteria - 162; Metazoa - 237; Fungi - 93; Plants - 90; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).  protein_id AT3G55170.1p  transcript_id AT3G55170.1  protein_id AT3G55170.1p  transcript_id AT3G55170.1  
At3g55170	chr3:020454290	0.0	C/20454290-20454293,20454053-20454188,20453279-20453435,20453136-20453210	AT3G55170.2  CDS  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L35 (RPL35C)  note 60S ribosomal protein L35 (RPL35C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, ribosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L29 (InterPro:IPR001854), Ribosomal protein L29, conserved site (InterPro:IPR018254); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L35 (RPL35A) (TAIR:AT3G09500.1); Has 875 Blast hits to 875 proteins in 318 species: Archae - 116; Bacteria - 162; Metazoa - 237; Fungi - 93; Plants - 90; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).  protein_id AT3G55170.2p  transcript_id AT3G55170.2  protein_id AT3G55170.2p  transcript_id AT3G55170.2  
At3g55180	chr3:020454903	0.0	W/20454903-20454920,20455070-20455199,20455292-20455438,20455629-20455759,20455974-20456111,20456192-20456290,20456407-20456682	AT3G55180.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product esterase/lipase/thioesterase family protein  note esterase/lipase/thioesterase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT2G39400.1); Has 2419 Blast hits to 2415 proteins in 759 species: Archae - 19; Bacteria - 1491; Metazoa - 128; Fungi - 96; Plants - 256; Viruses - 35; Other Eukaryotes - 394 (source: NCBI BLink).  protein_id AT3G55180.1p  transcript_id AT3G55180.1  protein_id AT3G55180.1p  transcript_id AT3G55180.1  
At3g55190	chr3:020458007	0.0	W/20458007-20458009,20458083-20458115,20458202-20458328,20458410-20458556,20458908-20459038,20459112-20459252,20459362-20459460,20459612-20459890	AT3G55190.1  CDS  go_process glycerol biosynthetic process|GO:0006114||IEA  go_component cellular_component|GO:0005575||ND  go_function catalytic activity|GO:0003824||ISS  product esterase/lipase/thioesterase family protein  note esterase/lipase/thioesterase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: glycerol biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: esterase/lipase/thioesterase family protein (TAIR:AT2G39420.1); Has 1957 Blast hits to 1951 proteins in 632 species: Archae - 23; Bacteria - 1155; Metazoa - 101; Fungi - 85; Plants - 249; Viruses - 34; Other Eukaryotes - 310 (source: NCBI BLink).  protein_id AT3G55190.1p  transcript_id AT3G55190.1  protein_id AT3G55190.1p  transcript_id AT3G55190.1  
At3g55200	chr3:020460533	0.0	W/20460533-20463547,20463645-20464136,20464224-20464361	AT3G55200.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_component nucleus|GO:0005634||ISS  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product splicing factor, putative  note splicing factor, putative; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: WD40 repeat (InterPro:IPR001680), Cleavage and polyadenylation specificity factor, A subunit, C-terminal (InterPro:IPR004871); BEST Arabidopsis thaliana protein match is: splicing factor, putative (TAIR:AT3G55220.1); Has 768 Blast hits to 695 proteins in 165 species: Archae - 0; Bacteria - 2; Metazoa - 341; Fungi - 160; Plants - 119; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).  protein_id AT3G55200.1p  transcript_id AT3G55200.1  protein_id AT3G55200.1p  transcript_id AT3G55200.1  
At3g55210	chr3:020465215	0.0	W/20465215-20465392,20465491-20465789,20465875-20466240	AT3G55210.1  CDS  gene_syn Arabidopsis NAC domain containing protein 63, anac063  gene anac063  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac063 (Arabidopsis NAC domain containing protein 63); transcription factor  note Arabidopsis NAC domain containing protein 63 (anac063); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC093 (Arabidopsis NAC domain containing protein 93); transcription factor (TAIR:AT5G39690.1); Has 1332 Blast hits to 1328 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1330; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G55210.1p  transcript_id AT3G55210.1  protein_id AT3G55210.1p  transcript_id AT3G55210.1  
At3g55220	chr3:020467930	0.0	C/20467930-20470944,20467341-20467832,20467116-20467253	AT3G55220.1  CDS  gene_syn T26I12.100  go_component nucleus|GO:0005634||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component nucleus|GO:0005634||ISS  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product splicing factor, putative  note splicing factor, putative; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: WD40 repeat (InterPro:IPR001680), Cleavage and polyadenylation specificity factor, A subunit, C-terminal (InterPro:IPR004871); BEST Arabidopsis thaliana protein match is: splicing factor, putative (TAIR:AT3G55200.1); Has 768 Blast hits to 695 proteins in 165 species: Archae - 0; Bacteria - 2; Metazoa - 341; Fungi - 160; Plants - 119; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).  protein_id AT3G55220.1p  transcript_id AT3G55220.1  protein_id AT3G55220.1p  transcript_id AT3G55220.1  
At3g55230	chr3:020471824	0.0	W/20471824-20472744	AT3G55230.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_function molecular_function|GO:0003674||ND  product disease resistance-responsive family protein  note disease resistance-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: disease resistance-responsive protein-related / dirigent protein-related (TAIR:AT2G39430.1); Has 382 Blast hits to 381 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 378; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G55230.1p  transcript_id AT3G55230.1  protein_id AT3G55230.1p  transcript_id AT3G55230.1  
At3g55240	chr3:020474670	0.0	C/20474670-20474705,20474441-20474546,20473876-20474021	AT3G55240.1  CDS  function Overexpression leads to PEL (Pseudo-Etiolation in Light) phenotype.  go_component endomembrane system|GO:0012505||IEA  go_process developmental process|GO:0032502|17227551|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: developmental process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28990.1); Has 117 Blast hits to 117 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G55240.1p  transcript_id AT3G55240.1  protein_id AT3G55240.1p  transcript_id AT3G55240.1  
At3g55250	chr3:020479302	0.0	W/20479302-20479649,20479761-20479925,20480004-20480324	AT3G55250.1  CDS  go_component nucleus|GO:0005634|14617066|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G55250.1p  transcript_id AT3G55250.1  protein_id AT3G55250.1p  transcript_id AT3G55250.1  
At3g55252	chr3:020480799	0.0	C/20480799-20481299	AT3G55252.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55254.1); Has 81 Blast hits to 78 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G55252.1p  transcript_id AT3G55252.1  protein_id AT3G55252.1p  transcript_id AT3G55252.1  
At3g55254	chr3:020482287	0.0	C/20482287-20482790	AT3G55254.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55252.1); Has 76 Blast hits to 73 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G55254.1p  transcript_id AT3G55254.1  protein_id AT3G55254.1p  transcript_id AT3G55254.1  
At3g55258	chr3:020487981	0.0	C/20487981-20488469	AT3G55258.1  pseudogenic_transcript  pseudo  function pseudogene similar to self-incompatibility  
At3g55260	chr3:020489317	0.0	W/20489317-20489661,20489763-20489846,20489930-20489965,20490113-20490224,20490329-20490399,20490513-20490643,20490802-20490818,20490950-20490998,20491286-20491386,20491596-20491655,20491748-20491781,20491917-20492015,20492161-20492220,20492322-20492572,20492683-20492858	AT3G55260.1  CDS  gene_syn ATHEX2, BETA-HEXOSAMINIDASE 1, HEXO1  gene HEXO1  function Encodes a protein with & 946;-hexosaminidase activity (the enzyme is active with p-nitrophenyl-& 946;-N-acetylglucosaminide as substrate but displayed only a minor activity toward p-nitrophenyl-& 946;-N-acetylgalactosaminide). The enzyme displays no distinct preference for a specific terminal GlcNAc residue and indeed cleaved the asialoagalactodabsylglycopeptide GnGn to a mixture of products.  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_component vacuole|GO:0005773|17644627|IDA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function beta-N-acetylhexosaminidase activity|GO:0004563|17644627|IDA  go_function hexosaminidase activity|GO:0015929|17636254|IDA  product HEXO1 (BETA-HEXOSAMINIDASE 1); beta-N-acetylhexosaminidase/ hexosaminidase/ hydrolase, hydrolyzing O-glycosyl compounds  note BETA-HEXOSAMINIDASE 1 (HEXO1); FUNCTIONS IN: hexosaminidase activity, beta-N-acetylhexosaminidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: vacuole, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 20, catalytic core (InterPro:IPR015883), Beta-N-acetylhexosaminidase-like (InterPro:IPR015882), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 20 (InterPro:IPR001540), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: HEXO3 (BETA-HEXOSAMINIDASE 3); beta-N-acetylhexosaminidase/ hexosaminidase (TAIR:AT1G65590.1); Has 2245 Blast hits to 2206 proteins in 442 species: Archae - 0; Bacteria - 1144; Metazoa - 401; Fungi - 132; Plants - 62; Viruses - 0; Other Eukaryotes - 506 (source: NCBI BLink).  protein_id AT3G55260.1p  transcript_id AT3G55260.1  protein_id AT3G55260.1p  transcript_id AT3G55260.1  
At3g55270	chr3:020496775	0.0	W/20496775-20499071,20499352-20499408	AT3G55270.1  CDS  gene_syn MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, MKP1  gene MKP1  function MAP kinase phosphatase (MKP1)  go_component cellular_component|GO:0005575||ND  go_process response to salt stress|GO:0009651|12456655|IMP  go_process response to UV-C|GO:0010225|11274055|IMP  go_function MAP kinase tyrosine/serine/threonine phosphatase activity|GO:0017017|12456655|ISS  go_function MAP kinase tyrosine/serine/threonine phosphatase activity|GO:0017017||ISS  product MKP1 (MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1); MAP kinase tyrosine/serine/threonine phosphatase  note MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1 (MKP1); FUNCTIONS IN: MAP kinase tyrosine/serine/threonine phosphatase activity; INVOLVED IN: response to UV-C, response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Protein-tyrosine phosphatase (InterPro:IPR000387), Protein-tyrosine phosphatase, dual specificity (InterPro:IPR000340); BEST Arabidopsis thaliana protein match is: MKP2 (MAPK PHOSPHATASE 2); MAP kinase phosphatase/ protein tyrosine/serine/threonine phosphatase (TAIR:AT3G06110.2); Has 531 Blast hits to 455 proteins in 88 species: Archae - 0; Bacteria - 42; Metazoa - 313; Fungi - 58; Plants - 35; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT3G55270.1p  transcript_id AT3G55270.1  protein_id AT3G55270.1p  transcript_id AT3G55270.1  
At3g55280	chr3:020500667	0.0	W/20500667-20500682,20501000-20501073,20501092-20501363,20501435-20501519	AT3G55280.3  CDS  gene_syn RIBOSOMAL PROTEIN L23AB, RPL23AB  gene RPL23AB  function 60S ribosomal protein L23A (RPL23aB). Paralog of RPL23aA  go_component membrane|GO:0016020|17432890|IDA  go_function nucleotide binding|GO:0000166||IEA  go_component intracellular|GO:0005622||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_component cytosolic large ribosomal subunit|GO:0022625||ISS  go_process translation|GO:0006412||ISS  go_process response to oxidative stress|GO:0006979|18566829|IEP  go_process response to cold|GO:0009409|18566829|IEP  go_process response to high light intensity|GO:0009644|18566829|IEP  go_process ribosome biogenesis|GO:0042254||ISS  go_function RNA binding|GO:0003723||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product RPL23AB (RIBOSOMAL PROTEIN L23AB); RNA binding / nucleotide binding / structural constituent of ribosome  note RIBOSOMAL PROTEIN L23AB (RPL23AB); FUNCTIONS IN: structural constituent of ribosome, RNA binding, nucleotide binding; INVOLVED IN: response to oxidative stress, response to high light intensity, response to cold, translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, intracellular, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L23, conserved site (InterPro:IPR001014), Ribosomal protein L23/L15e, core (InterPro:IPR012678), Ribosomal protein L23/L25, N-terminal (InterPro:IPR005633), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ribosomal protein L25/L23 (InterPro:IPR013025); BEST Arabidopsis thaliana protein match is: RPL23AA (RIBOSOMAL PROTEIN L23AA); RNA binding / nucleotide binding / structural constituent of ribosome (TAIR:AT2G39460.2); Has 1921 Blast hits to 1921 proteins in 626 species: Archae - 218; Bacteria - 732; Metazoa - 340; Fungi - 99; Plants - 86; Viruses - 0; Other Eukaryotes - 446 (source: NCBI BLink).  protein_id AT3G55280.3p  transcript_id AT3G55280.3  protein_id AT3G55280.3p  transcript_id AT3G55280.3  
At3g55280	chr3:020500667	0.0	W/20500667-20500682,20501000-20501363,20501435-20501519	AT3G55280.1  CDS  gene_syn RIBOSOMAL PROTEIN L23AB, RPL23AB  gene RPL23AB  function 60S ribosomal protein L23A (RPL23aB). Paralog of RPL23aA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_function nucleotide binding|GO:0000166||IEA  go_component intracellular|GO:0005622||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_component cytosolic large ribosomal subunit|GO:0022625||ISS  go_process translation|GO:0006412||ISS  go_process response to oxidative stress|GO:0006979|18566829|IEP  go_process response to cold|GO:0009409|18566829|IEP  go_process response to high light intensity|GO:0009644|18566829|IEP  go_process ribosome biogenesis|GO:0042254||ISS  go_function RNA binding|GO:0003723||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product RPL23AB (RIBOSOMAL PROTEIN L23AB); RNA binding / nucleotide binding / structural constituent of ribosome  note RIBOSOMAL PROTEIN L23AB (RPL23AB); FUNCTIONS IN: structural constituent of ribosome, RNA binding, nucleotide binding; INVOLVED IN: response to oxidative stress, response to high light intensity, response to cold, translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, intracellular, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L23, conserved site (InterPro:IPR001014), Ribosomal protein L23/L15e, core (InterPro:IPR012678), Ribosomal protein L23/L25, N-terminal (InterPro:IPR005633), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ribosomal protein L25/L23 (InterPro:IPR013025); BEST Arabidopsis thaliana protein match is: RPL23AA (RIBOSOMAL PROTEIN L23AA); RNA binding / nucleotide binding / structural constituent of ribosome (TAIR:AT2G39460.2); Has 1925 Blast hits to 1925 proteins in 626 species: Archae - 218; Bacteria - 732; Metazoa - 342; Fungi - 99; Plants - 86; Viruses - 0; Other Eukaryotes - 448 (source: NCBI BLink).  protein_id AT3G55280.1p  transcript_id AT3G55280.1  protein_id AT3G55280.1p  transcript_id AT3G55280.1  
At3g55280	chr3:020500667	0.0	W/20500667-20500682,20501000-20501363,20501435-20501519	AT3G55280.2  CDS  gene_syn RIBOSOMAL PROTEIN L23AB, RPL23AB  gene RPL23AB  function 60S ribosomal protein L23A (RPL23aB). Paralog of RPL23aA  go_component membrane|GO:0016020|17432890|IDA  go_function nucleotide binding|GO:0000166||IEA  go_component intracellular|GO:0005622||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_component cytosolic large ribosomal subunit|GO:0022625||ISS  go_process translation|GO:0006412||ISS  go_process response to oxidative stress|GO:0006979|18566829|IEP  go_process response to cold|GO:0009409|18566829|IEP  go_process response to high light intensity|GO:0009644|18566829|IEP  go_process ribosome biogenesis|GO:0042254||ISS  go_function RNA binding|GO:0003723||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product RPL23AB (RIBOSOMAL PROTEIN L23AB); RNA binding / nucleotide binding / structural constituent of ribosome  note RIBOSOMAL PROTEIN L23AB (RPL23AB); FUNCTIONS IN: structural constituent of ribosome, RNA binding, nucleotide binding; INVOLVED IN: response to oxidative stress, response to high light intensity, response to cold, translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, intracellular, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L23, conserved site (InterPro:IPR001014), Ribosomal protein L23/L15e, core (InterPro:IPR012678), Ribosomal protein L23/L25, N-terminal (InterPro:IPR005633), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ribosomal protein L25/L23 (InterPro:IPR013025); BEST Arabidopsis thaliana protein match is: RPL23AA (RIBOSOMAL PROTEIN L23AA); RNA binding / nucleotide binding / structural constituent of ribosome (TAIR:AT2G39460.2); Has 1925 Blast hits to 1925 proteins in 626 species: Archae - 218; Bacteria - 732; Metazoa - 342; Fungi - 99; Plants - 86; Viruses - 0; Other Eukaryotes - 448 (source: NCBI BLink).  protein_id AT3G55280.2p  transcript_id AT3G55280.2  protein_id AT3G55280.2p  transcript_id AT3G55280.2  
At3g55290	chr3:020502653	0.0	W/20502653-20502670,20502906-20503730	AT3G55290.1  CDS  go_component peroxisome|GO:0005777|17951448|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: binding / catalytic/ oxidoreductase (TAIR:AT3G55310.1); Has 87000 Blast hits to 86846 proteins in 2263 species: Archae - 490; Bacteria - 46954; Metazoa - 5904; Fungi - 4527; Plants - 1824; Viruses - 5; Other Eukaryotes - 27296 (source: NCBI BLink).  protein_id AT3G55290.1p  transcript_id AT3G55290.1  protein_id AT3G55290.1p  transcript_id AT3G55290.1  
At3g55290	chr3:020502653	0.0	W/20502653-20502670,20502909-20503730	AT3G55290.2  CDS  go_component peroxisome|GO:0005777|17951448|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: binding / catalytic/ oxidoreductase (TAIR:AT3G55310.1); Has 86959 Blast hits to 86805 proteins in 2259 species: Archae - 491; Bacteria - 46954; Metazoa - 5904; Fungi - 4483; Plants - 1829; Viruses - 5; Other Eukaryotes - 27293 (source: NCBI BLink).  protein_id AT3G55290.2p  transcript_id AT3G55290.2  protein_id AT3G55290.2p  transcript_id AT3G55290.2  
At3g55300	chr3:020504036	0.0	C/20504036-20504901	AT3G55300.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 4.5e-28 P-value blast match to GB:CAA37924 orf 2 (Ty1_Copia-element) (Arabidopsis thaliana)  
At3g55310	chr3:020505873	0.0	W/20505873-20505890,20506137-20506958	AT3G55310.1  CDS  go_component membrane|GO:0016020|17432890|IDA  go_process metabolic process|GO:0008152||IEA  go_process fatty acid elongation, saturated fatty acid|GO:0019367||IEA  go_process fatty acid elongation, unsaturated fatty acid|GO:0019368||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product binding / catalytic/ oxidoreductase  note binding / catalytic/ oxidoreductase; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: fatty acid elongation, unsaturated fatty acid, metabolic process, fatty acid elongation, saturated fatty acid; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT3G55290.2); Has 87137 Blast hits to 86983 proteins in 2306 species: Archae - 493; Bacteria - 46788; Metazoa - 6046; Fungi - 4538; Plants - 1842; Viruses - 5; Other Eukaryotes - 27425 (source: NCBI BLink).  protein_id AT3G55310.1p  transcript_id AT3G55310.1  protein_id AT3G55310.1p  transcript_id AT3G55310.1  
At3g55320	chr3:020512986	0.0	C/20512986-20513393,20512820-20512874,20512556-20512731,20512243-20512443,20511330-20511589,20510858-20511168,20510548-20510768,20510118-20510458,20509190-20509971,20508855-20509096,20507391-20508620	AT3G55320.1  CDS  gene_syn P-GLYCOPROTEIN 20, PGP20  gene PGP20  go_component plasma membrane|GO:0005886|17317660|IDA  go_process transport|GO:0006810||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product PGP20 (P-GLYCOPROTEIN 20); ATPase, coupled to transmembrane movement of substances  note P-GLYCOPROTEIN 20 (PGP20); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PGP6 (P-GLYCOPROTEIN 6); ATPase, coupled to transmembrane movement of substances (TAIR:AT2G39480.1); Has 420255 Blast hits to 212634 proteins in 2617 species: Archae - 7547; Bacteria - 290800; Metazoa - 15470; Fungi - 7867; Plants - 4362; Viruses - 13; Other Eukaryotes - 94196 (source: NCBI BLink).  protein_id AT3G55320.1p  transcript_id AT3G55320.1  protein_id AT3G55320.1p  transcript_id AT3G55320.1  
At3g55330	chr3:020515140	0.0	C/20515140-20515275,20514937-20515017,20514781-20514863,20514580-20514702,20514437-20514508,20514225-20514321,20514031-20514131	AT3G55330.1  CDS  gene_syn PPL1, PsbP-like protein 1  gene PPL1  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_process photosynthesis|GO:0015979||IEA  go_function calcium ion binding|GO:0005509||IEA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  go_component oxygen evolving complex|GO:0009654||ISS  go_component chloroplast photosystem II|GO:0030095||ISS  product PPL1 (PsbP-like protein 1); calcium ion binding  note PsbP-like protein 1 (PPL1); FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); BEST Arabidopsis thaliana protein match is: PPL2 (PsbP-like protein 2); calcium ion binding (TAIR:AT2G39470.2); Has 438 Blast hits to 438 proteins in 83 species: Archae - 0; Bacteria - 94; Metazoa - 0; Fungi - 0; Plants - 222; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT3G55330.1p  transcript_id AT3G55330.1  protein_id AT3G55330.1p  transcript_id AT3G55330.1  
At3g55340	chr3:020515672	0.0	W/20515672-20516126,20516213-20516387,20516576-20516622,20516716-20517832	AT3G55340.1  CDS  gene_syn PHIP1, PHRAGMOPLASTIN INTERACTING PROTEIN 1  gene PHIP1  function Plant-specific protein. Interacts with phragmoplastin, Rop1 and Rop2. Involved in cell plate formation.  go_component extrinsic to membrane|GO:0019898|18621982|IDA  go_process cell plate formation involved in plant-type cell wall biogenesis|GO:0009920|18621982|IDA  go_function RNA binding|GO:0003723||ISS  go_function mRNA binding|GO:0003729|18621982|IPI  product PHIP1 (PHRAGMOPLASTIN INTERACTING PROTEIN 1); RNA binding / mRNA binding  note PHRAGMOPLASTIN INTERACTING PROTEIN 1 (PHIP1); FUNCTIONS IN: mRNA binding, RNA binding; INVOLVED IN: cell plate formation involved in plant-type cell wall biogenesis; LOCATED IN: extrinsic to membrane; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative (TAIR:AT2G35410.1); Has 15411 Blast hits to 10891 proteins in 453 species: Archae - 9; Bacteria - 409; Metazoa - 7991; Fungi - 1891; Plants - 1545; Viruses - 16; Other Eukaryotes - 3550 (source: NCBI BLink).  protein_id AT3G55340.1p  transcript_id AT3G55340.1  protein_id AT3G55340.1p  transcript_id AT3G55340.1  
At3g55350	chr3:020518518	0.0	W/20518518-20518707,20519660-20520690	AT3G55350.1  CDS  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63270.1); Has 871 Blast hits to 871 proteins in 106 species: Archae - 0; Bacteria - 2; Metazoa - 401; Fungi - 40; Plants - 421; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT3G55350.1p  transcript_id AT3G55350.1  protein_id AT3G55350.1p  transcript_id AT3G55350.1  
At3g55360	chr3:020522788	0.0	C/20522788-20522856,20522564-20522603,20521347-20522101,20521186-20521254	AT3G55360.1  CDS  gene_syn ATTSC13, CER10, ECR, ENOYL-COA REDUCTASE, TSC13  gene CER10  function Enoyl-CoA reductase is involved in all very long chain fatty acids (VLCFA) elongation reactions that are required for cuticular wax, storage lipid and sphingolipid metabolism. The protein is located in the ER, but in contrast to its yeast homolog TSC13 is not particularly enriched in the nuclear envelope-vacuole junction. Mutants in this gene show abnormal organ morphology and stem glossiness. Cells in all tissues are only about 1/3 of the size of wild type cells. The morphological changes are most likely to result from the reduction in the VLCFA content of sphingolipids. Mutants also show abnormalities in the endocytic membrane organization and transport.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum membrane|GO:0005789|15829606|IDA  go_component fatty acid elongase complex|GO:0009923|15829606|TAS  go_process sphingolipid metabolic process|GO:0006665|15829606|IMP  go_process wax biosynthetic process|GO:0010025|15829606|IMP  go_function 3-oxo-5-alpha-steroid 4-dehydrogenase activity|GO:0003865||ISS  go_function fatty acid elongase activity|GO:0009922|15829606|IMP  go_function trans-2-enoyl-CoA reductase (NADPH) activity|GO:0019166|14673020|IGI  product CER10; 3-oxo-5-alpha-steroid 4-dehydrogenase/ fatty acid elongase/ trans-2-enoyl-CoA reductase (NADPH)  note CER10; FUNCTIONS IN: fatty acid elongase activity, trans-2-enoyl-CoA reductase (NADPH) activity, 3-oxo-5-alpha-steroid 4-dehydrogenase activity; INVOLVED IN: wax biosynthetic process, sphingolipid metabolic process; LOCATED IN: endoplasmic reticulum, fatty acid elongase complex, plasma membrane, endoplasmic reticulum membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal (InterPro:IPR001104); BEST Arabidopsis thaliana protein match is: 3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein (TAIR:AT5G16010.1); Has 845 Blast hits to 845 proteins in 186 species: Archae - 0; Bacteria - 42; Metazoa - 307; Fungi - 95; Plants - 97; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink).  protein_id AT3G55360.1p  transcript_id AT3G55360.1  protein_id AT3G55360.1p  transcript_id AT3G55360.1  
At3g55370	chr3:020527198	0.0	W/20527198-20527251,20527866-20528568,20528662-20528876	AT3G55370.1  CDS  gene_syn OBF-BINDING PROTEIN 3, OBP3, ZINC FINGER PROTEIN OBP3  gene OBP3  function Encodes a nuclear localized Dof domain containing transcription factor expressed primarily in roots. Responsive to salicylic acid. Transgenic overexpressors have yellow leaves and short, defective roots.  go_component nucleus|GO:0005634|15659636|IDA  go_process photomorphogenesis|GO:0009640|15659636|IMP  go_process positive regulation of transcription|GO:0045941|12887587|IEP  go_function DNA binding|GO:0003677|10758484|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  go_function transcription factor activity|GO:0003700|12887587|IEP  product OBP3 (OBF-BINDING PROTEIN 3); DNA binding / transcription factor  note OBF-BINDING PROTEIN 3 (OBP3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: positive regulation of transcription, photomorphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT2G37590.1); Has 630 Blast hits to 622 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 619; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G55370.1p  transcript_id AT3G55370.1  protein_id AT3G55370.1p  transcript_id AT3G55370.1  
At3g55370	chr3:020527198	0.0	W/20527198-20527251,20527866-20528876	AT3G55370.2  CDS  gene_syn OBF-BINDING PROTEIN 3, OBP3, ZINC FINGER PROTEIN OBP3  gene OBP3  function Encodes a nuclear localized Dof domain containing transcription factor expressed primarily in roots. Responsive to salicylic acid. Transgenic overexpressors have yellow leaves and short, defective roots.  go_component nucleus|GO:0005634|15659636|IDA  go_process photomorphogenesis|GO:0009640|15659636|IMP  go_process positive regulation of transcription|GO:0045941|12887587|IEP  go_function DNA binding|GO:0003677|10758484|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  go_function transcription factor activity|GO:0003700|12887587|IEP  product OBP3 (OBF-BINDING PROTEIN 3); DNA binding / transcription factor  note OBF-BINDING PROTEIN 3 (OBP3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: positive regulation of transcription, photomorphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT2G37590.1); Has 645 Blast hits to 633 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 2; Plants - 619; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT3G55370.2p  transcript_id AT3G55370.2  protein_id AT3G55370.2p  transcript_id AT3G55370.2  
At3g55380	chr3:020531520	0.0	W/20531520-20531565,20531685-20531787,20532039-20532136,20532221-20532321,20532740-20532895	AT3G55380.1  CDS  gene_syn UBC14, ubiquitin-conjugating enzyme 14  gene UBC14  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC14 (ubiquitin-conjugating enzyme 14); ubiquitin-protein ligase  note ubiquitin-conjugating enzyme 14 (UBC14); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC13 (ubiquitin-conjugating enzyme 13); ubiquitin-protein ligase (TAIR:AT3G46460.1); Has 7429 Blast hits to 7405 proteins in 304 species: Archae - 0; Bacteria - 0; Metazoa - 3551; Fungi - 1467; Plants - 1109; Viruses - 19; Other Eukaryotes - 1283 (source: NCBI BLink).  protein_id AT3G55380.1p  transcript_id AT3G55380.1  protein_id AT3G55380.1p  transcript_id AT3G55380.1  
At3g55390	chr3:020534785	0.0	W/20534785-20535005,20535090-20535225,20535393-20535620	AT3G55390.1  CDS  product integral membrane family protein  note integral membrane family protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); Has 176 Blast hits to 176 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 176; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G55390.1p  transcript_id AT3G55390.1  protein_id AT3G55390.1p  transcript_id AT3G55390.1  
At3g55400	chr3:020538694	0.0	C/20538694-20538999,20538317-20538610,20538062-20538229,20537786-20537910,20537517-20537610,20537123-20537221,20536798-20536978,20536577-20536692,20536263-20536481	AT3G55400.2  CDS  gene_syn OVA1, OVULE ABORTION 1  gene OVA1  go_component chloroplast|GO:0009507|18431481|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function methionine-tRNA ligase activity|GO:0004825||IEA  go_function ATP binding|GO:0005524||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16251277|IDA  go_component chloroplast|GO:0009507|16251277|IDA  go_process tRNA aminoacylation for protein translation|GO:0006418||ISS  go_process ovule development|GO:0048481|16297076|IMP  go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS  go_function ATP binding|GO:0005524||ISS  product OVA1 (OVULE ABORTION 1); ATP binding / aminoacyl-tRNA ligase/ methionine-tRNA ligase/ nucleotide binding  note OVULE ABORTION 1 (OVA1); FUNCTIONS IN: methionine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: ovule development, tRNA aminoacylation for protein translation; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Methionyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR014758), Aminoacyl-tRNA synthetase, class I (M) (InterPro:IPR015413), Methionyl-tRNA synthetase, class Ia (InterPro:IPR002304), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080); BEST Arabidopsis thaliana protein match is: methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (TAIR:AT4G13780.1); Has 16635 Blast hits to 16005 proteins in 1688 species: Archae - 575; Bacteria - 8369; Metazoa - 352; Fungi - 329; Plants - 97; Viruses - 3; Other Eukaryotes - 6910 (source: NCBI BLink).  protein_id AT3G55400.2p  transcript_id AT3G55400.2  protein_id AT3G55400.2p  transcript_id AT3G55400.2  
At3g55400	chr3:020538694	0.0	C/20538694-20538999,20538317-20538610,20538062-20538229,20537786-20537910,20537517-20537610,20537123-20537221,20536798-20536978,20536577-20536692,20536326-20536481,20536084-20536212,20535809-20535991	AT3G55400.1  CDS  gene_syn OVA1, OVULE ABORTION 1  gene OVA1  go_component chloroplast|GO:0009507|18431481|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function methionine-tRNA ligase activity|GO:0004825||IEA  go_function ATP binding|GO:0005524||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16251277|IDA  go_component chloroplast|GO:0009507|16251277|IDA  go_process tRNA aminoacylation for protein translation|GO:0006418||ISS  go_process ovule development|GO:0048481|16297076|IMP  go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS  go_function ATP binding|GO:0005524||ISS  product OVA1 (OVULE ABORTION 1); ATP binding / aminoacyl-tRNA ligase/ methionine-tRNA ligase/ nucleotide binding  note OVULE ABORTION 1 (OVA1); FUNCTIONS IN: methionine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: ovule development, tRNA aminoacylation for protein translation; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Methionyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR014758), Aminoacyl-tRNA synthetase, class I (M) (InterPro:IPR015413), Methionyl-tRNA synthetase, class Ia (InterPro:IPR002304), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080); BEST Arabidopsis thaliana protein match is: methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (TAIR:AT4G13780.1); Has 17619 Blast hits to 16751 proteins in 1692 species: Archae - 620; Bacteria - 8971; Metazoa - 364; Fungi - 366; Plants - 102; Viruses - 3; Other Eukaryotes - 7193 (source: NCBI BLink).  protein_id AT3G55400.1p  transcript_id AT3G55400.1  protein_id AT3G55400.1p  transcript_id AT3G55400.1  
At3g55410	chr3:020541897	0.0	W/20541897-20543444,20543564-20543790,20543866-20544198,20544427-20544673,20544774-20544902,20544988-20545203,20545290-20545413,20545499-20545728	AT3G55410.1  CDS  go_process glycolysis|GO:0006096||IEA  go_process metabolic process|GO:0008152||IEA  go_function oxoglutarate dehydrogenase (succinyl-transferring) activity|GO:0004591||IEA  go_function oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor|GO:0016624||IEA  go_function thiamin pyrophosphate binding|GO:0030976||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function oxoglutarate dehydrogenase (succinyl-transferring) activity|GO:0004591||ISS  product 2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative  note 2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, oxoglutarate dehydrogenase (succinyl-transferring) activity, thiamin pyrophosphate binding; INVOLVED IN: glycolysis, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxoglutarate dehydrogenase, E1 component (InterPro:IPR011603), Transketolase, central region (InterPro:IPR005475), Dehydrogenase, E1 component (InterPro:IPR001017); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative (TAIR:AT5G65750.1); Has 8671 Blast hits to 8650 proteins in 1117 species: Archae - 2; Bacteria - 2472; Metazoa - 454; Fungi - 192; Plants - 54; Viruses - 0; Other Eukaryotes - 5497 (source: NCBI BLink).  protein_id AT3G55410.1p  transcript_id AT3G55410.1  protein_id AT3G55410.1p  transcript_id AT3G55410.1  
At3g55420	chr3:020547920	0.0	W/20547920-20548570	AT3G55420.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 15 Blast hits to 15 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G55420.1p  transcript_id AT3G55420.1  protein_id AT3G55420.1p  transcript_id AT3G55420.1  
At3g55430	chr3:020551543	0.0	C/20551543-20552004,20549806-20550693	AT3G55430.1  CDS  go_component cell wall|GO:0005618|15593128|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative  note glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT2G39640.1); Has 1789 Blast hits to 1736 proteins in 128 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 34; Plants - 1749; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G55430.1p  transcript_id AT3G55430.1  protein_id AT3G55430.1p  transcript_id AT3G55430.1  
At3g55440	chr3:020553794	0.0	W/20553794-20553832,20554160-20554235,20554526-20554649,20554994-20555078,20555173-20555305,20555484-20555578,20555689-20555767,20555854-20555936,20556028-20556078	AT3G55440.1  CDS  gene_syn ATCTIMC, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, TPI, TRIOSEPHOSPHATE ISOMERASE  gene TPI  function Encodes triosephosphate isomerase.  go_component cell wall|GO:0005618|16287169|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component mitochondrion|GO:0005739|12953116|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component cytosol|GO:0005829||ISS  go_process glycolysis|GO:0006096|12881492|IC  go_process metabolic process|GO:0008152||ISS  go_process peptidyl-cysteine S-nitrosylation|GO:0018119|18297659|IDA  go_process cellular carbohydrate metabolic process|GO:0044262|12881492|IDA  go_function triose-phosphate isomerase activity|GO:0004807|12881492|IDA  go_function triose-phosphate isomerase activity|GO:0004807||ISS  product TPI (TRIOSEPHOSPHATE ISOMERASE); triose-phosphate isomerase  note TRIOSEPHOSPHATE ISOMERASE (TPI); FUNCTIONS IN: triose-phosphate isomerase activity; INVOLVED IN: in 6 processes; LOCATED IN: in 8 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Triosephosphate isomerase (InterPro:IPR000652); BEST Arabidopsis thaliana protein match is: TIM (TRIOSEPHOSPHATE ISOMERASE); catalytic/ triose-phosphate isomerase (TAIR:AT2G21170.1); Has 7876 Blast hits to 7874 proteins in 2153 species: Archae - 36; Bacteria - 3426; Metazoa - 906; Fungi - 171; Plants - 409; Viruses - 0; Other Eukaryotes - 2928 (source: NCBI BLink).  protein_id AT3G55440.1p  transcript_id AT3G55440.1  protein_id AT3G55440.1p  transcript_id AT3G55440.1  
At3g55450	chr3:020558129	0.0	W/20558129-20558159,20558389-20558696,20558789-20558924,20559003-20559148,20559228-20559351,20559539-20559963	AT3G55450.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: BIK1 (BOTRYTIS-INDUCED KINASE1); kinase (TAIR:AT2G39660.1); Has 84851 Blast hits to 83842 proteins in 3112 species: Archae - 46; Bacteria - 7571; Metazoa - 37439; Fungi - 6485; Plants - 18818; Viruses - 339; Other Eukaryotes - 14153 (source: NCBI BLink).  protein_id AT3G55450.1p  transcript_id AT3G55450.1  protein_id AT3G55450.1p  transcript_id AT3G55450.1  
At3g55460	chr3:020561024	0.0	W/20561024-20561199,20561300-20561377,20562478-20562648,20562790-20562821,20563004-20563082,20563165-20563314,20563400-20563502	AT3G55460.1  CDS  gene_syn SCL30  gene SCL30  function encodes an SC35-like splicing factor that is localized to nuclear specks.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component nuclear speck|GO:0016607|15133128|IDA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|12176998|TAS  go_process response to oxidative stress|GO:0006979|18433157|IDA  go_process RNA splicing|GO:0008380|16807317|NAS  go_function RNA binding|GO:0003723||ISS  product SCL30; RNA binding / nucleic acid binding / nucleotide binding  note SCL30; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: response to oxidative stress, nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: SCL30a; RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT3G13570.1); Has 15783 Blast hits to 12793 proteins in 581 species: Archae - 0; Bacteria - 760; Metazoa - 9440; Fungi - 1905; Plants - 1981; Viruses - 118; Other Eukaryotes - 1579 (source: NCBI BLink).  protein_id AT3G55460.1p  transcript_id AT3G55460.1  protein_id AT3G55460.1p  transcript_id AT3G55460.1  
At3g55470	chr3:020564356	0.0	W/20564356-20564422,20564521-20564586,20565555-20565696,20565800-20565935,20566033-20566092	AT3G55470.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT1G63220.1); Has 1761 Blast hits to 1679 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 1025; Fungi - 76; Plants - 508; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).  protein_id AT3G55470.1p  transcript_id AT3G55470.1  protein_id AT3G55470.1p  transcript_id AT3G55470.1  
At3g55470	chr3:020564356	0.0	W/20564356-20564422,20564521-20564586,20565558-20565696,20565800-20565935,20566033-20566092	AT3G55470.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT1G63220.1); Has 2047 Blast hits to 1977 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 1188; Fungi - 130; Plants - 573; Viruses - 0; Other Eukaryotes - 156 (source: NCBI BLink).  protein_id AT3G55470.2p  transcript_id AT3G55470.2  protein_id AT3G55470.2p  transcript_id AT3G55470.2  
At3g55480	chr3:020570471	0.0	C/20570471-20570629,20569758-20570387,20569478-20569651,20569150-20569276,20568959-20569068,20568601-20568801,20567324-20568267,20566870-20567133,20566372-20566726	AT3G55480.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_component membrane coat|GO:0030117||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  product adaptin family protein  note adaptin family protein; FUNCTIONS IN: protein binding, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: beta-adaptin, putative (TAIR:AT4G11380.1); Has 2205 Blast hits to 1398 proteins in 174 species: Archae - 0; Bacteria - 749; Metazoa - 715; Fungi - 369; Plants - 87; Viruses - 0; Other Eukaryotes - 285 (source: NCBI BLink).  protein_id AT3G55480.1p  transcript_id AT3G55480.1  protein_id AT3G55480.1p  transcript_id AT3G55480.1  
At3g55480	chr3:020570956	0.0	C/20570956-20571171,20570793-20570869,20570471-20570720,20569758-20570387,20569478-20569651,20569150-20569276,20568959-20569068,20568601-20568801,20567324-20568267,20566870-20567133,20566372-20566726	AT3G55480.2  CDS  go_component Golgi apparatus|GO:0005794||IEA  go_component membrane coat|GO:0030117||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process endocytosis|GO:0006897||IEA  go_process protein transport|GO:0015031||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function protein transporter activity|GO:0008565||IEA  product adaptin family protein  note adaptin family protein; FUNCTIONS IN: protein transporter activity, protein binding, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, endocytosis, protein transport; LOCATED IN: membrane coat, Golgi apparatus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adaptor protein complex AP-3, beta subunit (InterPro:IPR017108), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: beta-adaptin, putative (TAIR:AT4G11380.1); Has 2205 Blast hits to 1398 proteins in 174 species: Archae - 0; Bacteria - 749; Metazoa - 715; Fungi - 369; Plants - 87; Viruses - 0; Other Eukaryotes - 285 (source: NCBI BLink).  protein_id AT3G55480.2p  transcript_id AT3G55480.2  protein_id AT3G55480.2p  transcript_id AT3G55480.2  
At3g55490	chr3:020573371	0.0	C/20573371-20573415,20573220-20573288,20573029-20573129,20572785-20572877,20572391-20572530,20572171-20572280	AT3G55490.1  CDS  product unknown protein  note CONTAINS InterPro DOMAIN/s: GINS complex, Psf3 component (InterPro:IPR010492); BEST Arabidopsis thaliana protein match is: TTN10 (TITAN 10) (TAIR:AT1G19080.1); Has 224 Blast hits to 224 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 76; Plants - 22; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT3G55490.1p  transcript_id AT3G55490.1  protein_id AT3G55490.1p  transcript_id AT3G55490.1  
At3g55500	chr3:020575949	0.0	C/20575949-20576102,20575500-20575818,20575073-20575382	AT3G55500.1  CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN A16, ATEXP16, ATEXPA16, ATHEXP ALPHA 1.7, EXP16, EXPANSIN 16  gene ATEXPA16  function expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_process syncytium formation|GO:0006949|16942607|IEP  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828||ISS  go_process plant-type cell wall modification during multidimensional cell growth|GO:0009831||ISS  product ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)  note ARABIDOPSIS THALIANA EXPANSIN A16 (ATEXPA16); INVOLVED IN: syncytium formation, plant-type cell wall modification during multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4) (TAIR:AT2G39700.1); Has 1438 Blast hits to 1437 proteins in 128 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 28; Plants - 1380; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT3G55500.1p  transcript_id AT3G55500.1  protein_id AT3G55500.1p  transcript_id AT3G55500.1  
At3g55510	chr3:020579232	0.0	W/20579232-20579340,20579506-20579569,20579788-20579896,20580033-20580521,20580800-20581099,20581185-20581508,20581614-20581820,20581942-20582124	AT3G55510.1  CDS  gene_syn RBL, REBELOTE  gene RBL  go_component nucleus|GO:0005634|18441215|IDA  go_process floral meristem determinacy|GO:0010582|18441215|IGI  product RBL (REBELOTE)  note REBELOTE (RBL); INVOLVED IN: floral meristem determinacy; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0120 (InterPro:IPR005343); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G18220.1); Has 281 Blast hits to 268 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 103; Fungi - 93; Plants - 38; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT3G55510.1p  transcript_id AT3G55510.1  protein_id AT3G55510.1p  transcript_id AT3G55510.1  
At3g55512	chr3:020587904	0.0	W/20587904-20588027	AT3G55512.1  miRNA  gene_syn MICRORNA172D, MIR172D  gene MIR172D  function Encodes a microRNA that targets several genes containing AP2 domains including AP2. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: AGAAUCUUGAUGAUGCUGCAG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR172D (MICRORNA172D); miRNA  transcript_id AT3G55512.1  
At3g55515	chr3:020590923	0.0	W/20590923-20591162	AT3G55515.1  CDS  gene_syn DEVIL 8, DVL8, ROTUNDIFOLIA LIKE 7, RTFL7  gene RTFL7  go_component cellular_component|GO:0005575||ND  go_process shoot development|GO:0048367|14871303|ISS  go_function molecular_function|GO:0003674||ND  product RTFL7 (ROTUNDIFOLIA LIKE 7)  note ROTUNDIFOLIA LIKE 7 (RTFL7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: shoot development; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); BEST Arabidopsis thaliana protein match is: RTFL8 (ROTUNDIFOLIA LIKE 8) (TAIR:AT2G39705.1); Has 90 Blast hits to 90 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G55515.1p  transcript_id AT3G55515.1  protein_id AT3G55515.1p  transcript_id AT3G55515.1  
At3g55520	chr3:020594177	0.0	W/20594177-20594285,20594402-20594535,20594621-20594700,20594792-20594884,20594972-20595128	AT3G55520.1  CDS  go_process protein folding|GO:0006457||IEA  go_component chloroplast thylakoid lumen|GO:0009543||ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  go_function FK506 binding|GO:0005528||ISS  product immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative  note immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: chloroplast thylakoid lumen; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative (TAIR:AT5G48570.1); Has 5600 Blast hits to 5092 proteins in 939 species: Archae - 4; Bacteria - 2207; Metazoa - 1606; Fungi - 351; Plants - 420; Viruses - 0; Other Eukaryotes - 1012 (source: NCBI BLink).  protein_id AT3G55520.1p  transcript_id AT3G55520.1  protein_id AT3G55520.1p  transcript_id AT3G55520.1  
At3g55530	chr3:020597108	0.0	C/20597108-20597188,20596980-20597034,20596849-20596901,20596533-20596761,20596324-20596435,20595794-20595839,20595510-20595629,20595300-20595425	AT3G55530.1  CDS  gene_syn SALT- AND DROUGHT-INDUCED RING FINGER1, SDIR1  gene SDIR1  function Encodes an intracellular membrane localized protein with E3 ligase activity that is involved in regulation of ABA signaling. Loss of function alleles show decreased sensitivity to ABA. Overexpression results in increased sensitivity to ABA.  go_component microsome|GO:0005792|17573536|IDA  go_component intracellular membrane-bounded organelle|GO:0043231|17573536|IDA  go_process response to water deprivation|GO:0009414|17573536|IEP  go_process response to salt stress|GO:0009651|17573536|IEP  go_process response to abscisic acid stimulus|GO:0009737|17573536|IEP  go_process positive regulation of abscisic acid mediated signaling|GO:0009789|17573536|IMP  go_function ubiquitin-protein ligase activity|GO:0004842|17573536|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product SDIR1 (SALT- AND DROUGHT-INDUCED RING FINGER1); protein binding / ubiquitin-protein ligase/ zinc ion binding  note SALT- AND DROUGHT-INDUCED RING FINGER1 (SDIR1); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: response to salt stress, response to water deprivation, positive regulation of abscisic acid mediated signaling, response to abscisic acid stimulus; LOCATED IN: intracellular membrane-bounded organelle, microsome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G04790.1); Has 6660 Blast hits to 6639 proteins in 221 species: Archae - 0; Bacteria - 6; Metazoa - 2357; Fungi - 500; Plants - 2687; Viruses - 79; Other Eukaryotes - 1031 (source: NCBI BLink).  protein_id AT3G55530.1p  transcript_id AT3G55530.1  protein_id AT3G55530.1p  transcript_id AT3G55530.1  
At3g55540	chr3:020598218	0.0	W/20598218-20598451,20598637-20598904,20599028-20599158,20599243-20599614	AT3G55540.1  CDS  go_component intracellular|GO:0005622||IEA  go_process transport|GO:0006810||IEA  go_component intracellular|GO:0005622||ISS  go_component nucleus|GO:0005634||ISS  go_process protein import into nucleus|GO:0006606||ISS  go_function protein transporter activity|GO:0008565||ISS  product nuclear transport factor 2 (NTF2) family protein  note nuclear transport factor 2 (NTF2) family protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: transport, protein import into nucleus; LOCATED IN: nucleus, intracellular; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222); BEST Arabidopsis thaliana protein match is: nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT1G69250.2); Has 165 Blast hits to 115 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 17; Plants - 142; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G55540.1p  transcript_id AT3G55540.1  protein_id AT3G55540.1p  transcript_id AT3G55540.1  
At3g55550	chr3:020600019	0.0	C/20600019-20602073	AT3G55550.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product lectin protein kinase, putative  note lectin protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: RLK (receptor lectin kinase); kinase (TAIR:AT2G37710.1); Has 86229 Blast hits to 85142 proteins in 3260 species: Archae - 47; Bacteria - 7439; Metazoa - 37868; Fungi - 6742; Plants - 19531; Viruses - 366; Other Eukaryotes - 14236 (source: NCBI BLink).  protein_id AT3G55550.1p  transcript_id AT3G55550.1  protein_id AT3G55550.1p  transcript_id AT3G55550.1  
At3g55560	chr3:020604904	0.0	C/20604904-20605836	AT3G55560.1  CDS  gene_syn AGF2, AT-hook protein of GA feedback 2  gene AGF2  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product AGF2 (AT-hook protein of GA feedback 2)  note AT-hook protein of GA feedback 2 (AGF2); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: DNA-binding protein-related (TAIR:AT4G14465.1); Has 448 Blast hits to 446 proteins in 30 species: Archae - 0; Bacteria - 8; Metazoa - 16; Fungi - 3; Plants - 417; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G55560.1p  transcript_id AT3G55560.1  protein_id AT3G55560.1p  transcript_id AT3G55560.1  
At3g55566	chr3:020608742	0.0	W/20608742-20608840	AT3G55566.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G55566.1p  transcript_id AT3G55566.1  protein_id AT3G55566.1p  transcript_id AT3G55566.1  
At3g55570	chr3:020610623	0.0	C/20610623-20610671,20610166-20610446	AT3G55570.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41761.1); Has 47 Blast hits to 47 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G55570.1p  transcript_id AT3G55570.1  protein_id AT3G55570.1p  transcript_id AT3G55570.1  
At3g55573	chr3:020611297	0.0	C/20611297-20611428	AT3G55573.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G55573.1p  transcript_id AT3G55573.1  protein_id AT3G55573.1p  transcript_id AT3G55573.1  
At3g55580	chr3:020612766	0.0	W/20612766-20613006,20613128-20613201,20613293-20613377,20613449-20613562,20613650-20613886,20614043-20614273,20614612-20614655,20615000-20615182,20615288-20615378,20615480-20615523,20615608-20615730	AT3G55580.1  CDS  gene_syn F1I16.1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function binding|GO:0005488||ISS  product regulator of chromosome condensation (RCC1) family protein  note regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, leaf whorl, sepal, flower, carpel; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: regulator of chromosome condensation (RCC1) family protein / UVB-resistance protein-related (TAIR:AT3G53830.1); Has 15001 Blast hits to 4588 proteins in 301 species: Archae - 60; Bacteria - 1594; Metazoa - 6197; Fungi - 778; Plants - 1401; Viruses - 2; Other Eukaryotes - 4969 (source: NCBI BLink).  protein_id AT3G55580.1p  transcript_id AT3G55580.1  protein_id AT3G55580.1p  transcript_id AT3G55580.1  
At3g55590	chr3:020617479	0.0	W/20617479-20617589,20617718-20617780,20617883-20618131,20618210-20618881	AT3G55590.1  CDS  gene_syn F1I16.2  go_process biosynthetic process|GO:0009058||IEA  go_function transferase activity|GO:0016740||IEA  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_process biosynthetic process|GO:0009058||ISS  go_function nucleotidyltransferase activity|GO:0016779||ISS  product GDP-mannose pyrophosphorylase, putative  note GDP-mannose pyrophosphorylase, putative; FUNCTIONS IN: transferase activity, nucleotidyltransferase activity; INVOLVED IN: biosynthetic process; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), Bacterial transferase hexapeptide repeat (InterPro:IPR001451), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: CYT1 (CYTOKINESIS DEFECTIVE 1); mannose-1-phosphate guanylyltransferase/ nucleotidyltransferase (TAIR:AT2G39770.1); Has 18382 Blast hits to 18373 proteins in 1725 species: Archae - 602; Bacteria - 10862; Metazoa - 375; Fungi - 237; Plants - 248; Viruses - 2; Other Eukaryotes - 6056 (source: NCBI BLink).  protein_id AT3G55590.1p  transcript_id AT3G55590.1  protein_id AT3G55590.1p  transcript_id AT3G55590.1  
At3g55600	chr3:020620682	0.0	W/20620682-20620768,20620848-20620915,20621120-20621192,20621438-20621553,20621639-20621740,20621901-20622000,20622165-20622341	AT3G55600.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: cation exchanger, putative (CAX10) (TAIR:AT1G54110.1); Has 167 Blast hits to 167 proteins in 56 species: Archae - 0; Bacteria - 8; Metazoa - 84; Fungi - 28; Plants - 42; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G55600.1p  transcript_id AT3G55600.1  protein_id AT3G55600.1p  transcript_id AT3G55600.1  
At3g55605	chr3:020622668	0.0	W/20622668-20622922,20623278-20623639,20623730-20623889	AT3G55605.1  CDS  go_component mitochondrial matrix|GO:0005759||IEA  go_component mitochondrial matrix|GO:0005759||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial glycoprotein family protein / MAM33 family protein  note mitochondrial glycoprotein family protein / MAM33 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrial matrix; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial glycoprotein (InterPro:IPR003428); BEST Arabidopsis thaliana protein match is: mitochondrial glycoprotein family protein / MAM33 family protein (TAIR:AT2G39795.1); Has 264 Blast hits to 264 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 83; Plants - 119; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT3G55605.1p  transcript_id AT3G55605.1  protein_id AT3G55605.1p  transcript_id AT3G55605.1  
At3g55610	chr3:020628930	0.0	C/20628930-20628989,20628555-20628626,20628364-20628467,20628181-20628283,20627925-20628086,20627466-20627743,20626970-20627120,20626712-20626876,20626532-20626609,20626294-20626383,20626124-20626210,20625930-20626016,20625740-20625836,20625553-20625656,20625361-20625436,20625005-20625159	AT3G55610.2  CDS  gene_syn DELTA 1-PYRROLINE-5-CARBOXYLATE SYNTHASE 2, P5CS2  gene P5CS2  function encodes delta 1-pyrroline-5-carboxylate synthetase B. Gene expression is induced by dehydration, high salt and ABA. Knock-out mutations in P5CS2 are embryo-lethal. P5CS2 appears to be present in different cells and/or different subcellular locations from P5CS1 in a tissue-dependent manner.  go_function catalytic activity|GO:0003824||IEA  go_function glutamate 5-kinase activity|GO:0004349||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cytoplasm|GO:0005737|17971042|IDA  go_component chloroplast|GO:0009507|17971042|IDA  go_process proline biosynthetic process|GO:0006561|17971042|IMP  go_process proline biosynthetic process|GO:0006561|9351242|TAS  go_process response to abscisic acid stimulus|GO:0009737|9351242|IEP  go_process embryonic development ending in seed dormancy|GO:0009793|17971042|IMP  go_process hyperosmotic salinity response|GO:0042538|9351242|IEP  product P5CS2 (DELTA 1-PYRROLINE-5-CARBOXYLATE SYNTHASE 2); catalytic/ glutamate 5-kinase/ oxidoreductase  note DELTA 1-PYRROLINE-5-CARBOXYLATE SYNTHASE 2 (P5CS2); FUNCTIONS IN: oxidoreductase activity, catalytic activity, glutamate 5-kinase activity; INVOLVED IN: embryonic development ending in seed dormancy, hyperosmotic salinity response, proline biosynthetic process, response to abscisic acid stimulus; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, C globular stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: delta l-pyrroline-5-carboxylate synthetase (InterPro:IPR005766), Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Glutamate 5-kinase (InterPro:IPR001057), Aspartate/glutamate/uridylate kinase (InterPro:IPR001048), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Glutamate 5-kinase, ProB-related (InterPro:IPR005715), Aldehyde dehydrogenase, C-terminal (InterPro:IPR016163); BEST Arabidopsis thaliana protein match is: P5CS1 (DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1); delta1-pyrroline-5-carboxylate synthetase (TAIR:AT2G39800.1); Has 9874 Blast hits to 9868 proteins in 1348 species: Archae - 74; Bacteria - 5101; Metazoa - 126; Fungi - 177; Plants - 113; Viruses - 0; Other Eukaryotes - 4283 (source: NCBI BLink).  protein_id AT3G55610.2p  transcript_id AT3G55610.2  protein_id AT3G55610.2p  transcript_id AT3G55610.2  
At3g55610	chr3:020628930	0.0	C/20628930-20628989,20628555-20628626,20628364-20628467,20628181-20628283,20627925-20628086,20627466-20627743,20626970-20627120,20626712-20626876,20626532-20626609,20626294-20626383,20626124-20626210,20625930-20626016,20625740-20625836,20625553-20625656,20625361-20625436,20625009-20625159,20624836-20624904,20624655-20624721,20624482-20624552,20624278-20624386	AT3G55610.1  CDS  gene_syn DELTA 1-PYRROLINE-5-CARBOXYLATE SYNTHASE 2, P5CS2  gene P5CS2  function encodes delta 1-pyrroline-5-carboxylate synthetase B. Gene expression is induced by dehydration, high salt and ABA. Knock-out mutations in P5CS2 are embryo-lethal. P5CS2 appears to be present in different cells and/or different subcellular locations from P5CS1 in a tissue-dependent manner.  go_function catalytic activity|GO:0003824||IEA  go_function glutamate 5-kinase activity|GO:0004349||IEA  go_function glutamate-5-semialdehyde dehydrogenase activity|GO:0004350||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cytoplasm|GO:0005737|17971042|IDA  go_component chloroplast|GO:0009507|17971042|IDA  go_process proline biosynthetic process|GO:0006561|17971042|IMP  go_process proline biosynthetic process|GO:0006561|9351242|TAS  go_process response to abscisic acid stimulus|GO:0009737|9351242|IEP  go_process embryonic development ending in seed dormancy|GO:0009793|17971042|IMP  go_process hyperosmotic salinity response|GO:0042538|9351242|IEP  product P5CS2 (DELTA 1-PYRROLINE-5-CARBOXYLATE SYNTHASE 2); catalytic/ glutamate 5-kinase/ glutamate-5-semialdehyde dehydrogenase/ oxidoreductase  note DELTA 1-PYRROLINE-5-CARBOXYLATE SYNTHASE 2 (P5CS2); FUNCTIONS IN: oxidoreductase activity, glutamate-5-semialdehyde dehydrogenase activity, catalytic activity, glutamate 5-kinase activity; INVOLVED IN: embryonic development ending in seed dormancy, hyperosmotic salinity response, proline biosynthetic process, response to abscisic acid stimulus; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, C globular stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Glutamate 5-kinase (InterPro:IPR001057), Aspartate/glutamate/uridylate kinase (InterPro:IPR001048), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, C-terminal (InterPro:IPR016163), Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Gamma-glutamyl phosphate reductase GPR (InterPro:IPR000965), delta l-pyrroline-5-carboxylate synthetase (InterPro:IPR005766), Glutamate 5-kinase, ProB-related (InterPro:IPR005715); BEST Arabidopsis thaliana protein match is: P5CS1 (DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1); delta1-pyrroline-5-carboxylate synthetase (TAIR:AT2G39800.1); Has 10582 Blast hits to 10574 proteins in 1356 species: Archae - 93; Bacteria - 5216; Metazoa - 129; Fungi - 176; Plants - 115; Viruses - 0; Other Eukaryotes - 4853 (source: NCBI BLink).  protein_id AT3G55610.1p  transcript_id AT3G55610.1  protein_id AT3G55610.1p  transcript_id AT3G55610.1  
At3g55620	chr3:020634581	0.0	W/20634581-20634590,20634679-20634775,20634870-20634955,20635057-20635101,20635474-20635604,20635854-20635964,20636055-20636312	AT3G55620.1  CDS  gene_syn emb1624, embryo defective 1624  gene emb1624  go_component nucleolus|GO:0005730|15496452|IDA  go_function ribosome binding|GO:0043022||IEA  go_process translational initiation|GO:0006413||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function translation initiation factor activity|GO:0003743||ISS  product emb1624 (embryo defective 1624); ribosome binding / translation initiation factor  note embryo defective 1624 (emb1624); FUNCTIONS IN: ribosome binding, translation initiation factor activity; INVOLVED IN: embryonic development ending in seed dormancy, translational initiation; LOCATED IN: nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF6 (InterPro:IPR002769); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 6, putative / eIF-6, putative (TAIR:AT2G39820.1); Has 595 Blast hits to 595 proteins in 239 species: Archae - 161; Bacteria - 0; Metazoa - 147; Fungi - 92; Plants - 45; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).  protein_id AT3G55620.1p  transcript_id AT3G55620.1  protein_id AT3G55620.1p  transcript_id AT3G55620.1  
At3g55630	chr3:020636785	0.0	W/20636785-20636794,20636895-20637025,20637105-20637170,20637237-20637346,20637424-20637484,20637575-20637592,20637740-20637796,20637874-20637934,20638011-20638057,20638125-20638202,20638283-20638435,20638516-20638722,20638806-20638884,20638969-20639243,20639336-20639395	AT3G55630.1  CDS  gene_syn A. THALIANA DHFS-FPGS HOMOLOG D, ATDFD  gene ATDFD  go_component cytosol|GO:0005829|11752472|IDA  go_process one-carbon compound metabolic process|GO:0006730|11752472|TAS  go_function tetrahydrofolylpolyglutamate synthase activity|GO:0004326|11752472|IGI  product ATDFD (A. THALIANA DHFS-FPGS HOMOLOG D); tetrahydrofolylpolyglutamate synthase  note A. THALIANA DHFS-FPGS HOMOLOG D (ATDFD); FUNCTIONS IN: tetrahydrofolylpolyglutamate synthase activity; INVOLVED IN: one-carbon compound metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Folylpolyglutamate synthetase, conserved site (InterPro:IPR018109), Mur ligase, central (InterPro:IPR013221), Mur ligase, C-terminal (InterPro:IPR004101), Folylpolyglutamate synthetase (InterPro:IPR001645); BEST Arabidopsis thaliana protein match is: ATDFB (A. THALIANA DHFS-FPGS HOMOLOG B); tetrahydrofolylpolyglutamate synthase (TAIR:AT5G05980.2); Has 5050 Blast hits to 5048 proteins in 1342 species: Archae - 23; Bacteria - 2469; Metazoa - 146; Fungi - 233; Plants - 62; Viruses - 0; Other Eukaryotes - 2117 (source: NCBI BLink).  protein_id AT3G55630.1p  transcript_id AT3G55630.1  protein_id AT3G55630.1p  transcript_id AT3G55630.1  
At3g55630	chr3:020636785	0.0	W/20636785-20636794,20636895-20637025,20637105-20637170,20637237-20637346,20637424-20637484,20637575-20637658,20637740-20637793,20637874-20637934,20638011-20638057,20638125-20638202,20638283-20638435,20638516-20638722,20638806-20638884,20638969-20639243,20639336-20639395	AT3G55630.2  CDS  gene_syn A. THALIANA DHFS-FPGS HOMOLOG D, ATDFD  gene ATDFD  go_component cytosol|GO:0005829|11752472|IDA  go_process one-carbon compound metabolic process|GO:0006730|11752472|TAS  go_function tetrahydrofolylpolyglutamate synthase activity|GO:0004326|11752472|IGI  product ATDFD (A. THALIANA DHFS-FPGS HOMOLOG D); tetrahydrofolylpolyglutamate synthase  note A. THALIANA DHFS-FPGS HOMOLOG D (ATDFD); FUNCTIONS IN: tetrahydrofolylpolyglutamate synthase activity; INVOLVED IN: one-carbon compound metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mur ligase, central (InterPro:IPR013221), Mur ligase, C-terminal (InterPro:IPR004101), Folylpolyglutamate synthetase (InterPro:IPR001645); BEST Arabidopsis thaliana protein match is: ATDFB (A. THALIANA DHFS-FPGS HOMOLOG B); tetrahydrofolylpolyglutamate synthase (TAIR:AT5G05980.2); Has 5038 Blast hits to 5037 proteins in 1341 species: Archae - 23; Bacteria - 2465; Metazoa - 146; Fungi - 231; Plants - 63; Viruses - 0; Other Eukaryotes - 2110 (source: NCBI BLink).  protein_id AT3G55630.2p  transcript_id AT3G55630.2  protein_id AT3G55630.2p  transcript_id AT3G55630.2  
At3g55630	chr3:020636785	0.0	W/20636785-20636794,20636895-20637025,20637105-20637170,20637237-20637346,20637424-20637484,20637575-20637658,20637740-20637796,20637874-20637934,20638011-20638057,20638125-20638202,20638283-20638435,20638516-20638722,20638806-20638884,20638969-20639243,20639336-20639395	AT3G55630.3  CDS  gene_syn A. THALIANA DHFS-FPGS HOMOLOG D, ATDFD  gene ATDFD  go_component cytosol|GO:0005829|11752472|IDA  go_process one-carbon compound metabolic process|GO:0006730|11752472|TAS  go_function tetrahydrofolylpolyglutamate synthase activity|GO:0004326|11752472|IGI  product ATDFD (A. THALIANA DHFS-FPGS HOMOLOG D); tetrahydrofolylpolyglutamate synthase  note A. THALIANA DHFS-FPGS HOMOLOG D (ATDFD); FUNCTIONS IN: tetrahydrofolylpolyglutamate synthase activity; INVOLVED IN: one-carbon compound metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Folylpolyglutamate synthetase, conserved site (InterPro:IPR018109), Mur ligase, central (InterPro:IPR013221), Mur ligase, C-terminal (InterPro:IPR004101), Folylpolyglutamate synthetase (InterPro:IPR001645); BEST Arabidopsis thaliana protein match is: ATDFB (A. THALIANA DHFS-FPGS HOMOLOG B); tetrahydrofolylpolyglutamate synthase (TAIR:AT5G05980.2); Has 5076 Blast hits to 5075 proteins in 1341 species: Archae - 23; Bacteria - 2465; Metazoa - 146; Fungi - 231; Plants - 63; Viruses - 0; Other Eukaryotes - 2148 (source: NCBI BLink).  protein_id AT3G55630.3p  transcript_id AT3G55630.3  protein_id AT3G55630.3p  transcript_id AT3G55630.3  
At3g55640	chr3:020640048	0.0	W/20640048-20640236,20640560-20640736,20640827-20640976,20641123-20641224,20641315-20641385,20641486-20641553,20642170-20642411	AT3G55640.1  CDS  go_component plasma membrane|GO:0005886|14506206|IDA  go_process transport|GO:0006810||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function transporter activity|GO:0005215||ISS  go_function binding|GO:0005488||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: transporter activity, binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrial inner membrane, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: mitochondrial substrate carrier family protein (TAIR:AT3G53940.1); Has 21212 Blast hits to 10226 proteins in 357 species: Archae - 0; Bacteria - 0; Metazoa - 10460; Fungi - 6053; Plants - 2702; Viruses - 0; Other Eukaryotes - 1997 (source: NCBI BLink).  protein_id AT3G55640.1p  transcript_id AT3G55640.1  protein_id AT3G55640.1p  transcript_id AT3G55640.1  
At3g55646	chr3:020645087	0.0	W/20645087-20645242,20645442-20645505,20645708-20645850,20645963-20646023,20646132-20646148	AT3G55646.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G39855.2); Has 39 Blast hits to 39 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G55646.1p  transcript_id AT3G55646.1  protein_id AT3G55646.1p  transcript_id AT3G55646.1  
At3g55650	chr3:020647085	0.0	W/20647085-20648617	AT3G55650.1  CDS  go_process glycolysis|GO:0006096||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function catalytic activity|GO:0003824||IEA  go_function pyruvate kinase activity|GO:0004743||IEA  go_function potassium ion binding|GO:0030955||IEA  go_component mitochondrion|GO:0005739|12953116|IDA  go_process glycolysis|GO:0006096||ISS  go_function pyruvate kinase activity|GO:0004743||ISS  product pyruvate kinase, putative  note pyruvate kinase, putative; FUNCTIONS IN: pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity; INVOLVED IN: glycolysis; LOCATED IN: mitochondrion; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Pyruvate kinase, C-terminal-like (InterPro:IPR015795), Pyruvate kinase, active site (InterPro:IPR018209), Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), Pyruvate kinase, alpha/beta (InterPro:IPR015794), Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate kinase (InterPro:IPR001697), Pyruvate kinase, barrel (InterPro:IPR015793); BEST Arabidopsis thaliana protein match is: pyruvate kinase, putative (TAIR:AT3G55810.1); Has 6877 Blast hits to 6803 proteins in 1519 species: Archae - 99; Bacteria - 3250; Metazoa - 487; Fungi - 169; Plants - 285; Viruses - 0; Other Eukaryotes - 2587 (source: NCBI BLink).  protein_id AT3G55650.1p  transcript_id AT3G55650.1  protein_id AT3G55650.1p  transcript_id AT3G55650.1  
At3g55660	chr3:020650972	0.0	C/20650972-20651290,20650770-20650886,20650520-20650674,20650374-20650448,20650006-20650284,20649551-20649916,20649051-20649479	AT3G55660.1  CDS  gene_syn ATROPGEF6, KINASE PARTNER PROTEIN-LIKE, KPP-LIKE, ROPGEF6  gene ROPGEF6  function Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function Rho guanyl-nucleotide exchange factor activity|GO:0005089|15980860|ISS  product ROPGEF6; Rho guanyl-nucleotide exchange factor  note ROPGEF6; FUNCTIONS IN: Rho guanyl-nucleotide exchange factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: ROPGEF5 (ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 5); Rho guanyl-nucleotide exchange factor (TAIR:AT5G05940.1); Has 175 Blast hits to 174 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 175; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G55660.1p  transcript_id AT3G55660.1  protein_id AT3G55660.1p  transcript_id AT3G55660.1  
At3g55665	chr3:020653712	0.0	W/20653712-20654218	AT3G55665.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55672.1); Has 70 Blast hits to 67 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G55665.1p  transcript_id AT3G55665.1  protein_id AT3G55665.1p  transcript_id AT3G55665.1  
At3g55670	chr3:020659473	0.0	C/20659473-20659503,20658801-20658931,20658474-20658731,20658013-20658249	AT3G55670.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G52680.2); Has 274 Blast hits to 168 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 274; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G55670.1p  transcript_id AT3G55670.1  protein_id AT3G55670.1p  transcript_id AT3G55670.1  
At3g55672	chr3:020660960	0.0	W/20660960-20661460	AT3G55672.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55665.1); Has 80 Blast hits to 77 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G55672.1p  transcript_id AT3G55672.1  protein_id AT3G55672.1p  transcript_id AT3G55672.1  
At3g55677	chr3:020663996	0.0	W/20663996-20664493	AT3G55677.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55672.1); Has 75 Blast hits to 72 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G55677.1p  transcript_id AT3G55677.1  protein_id AT3G55677.1p  transcript_id AT3G55677.1  
At3g55680	chr3:020666106	0.0	C/20666106-20666315,20665685-20666026	AT3G55680.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: pedicel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: enzyme inhibitor/ pectinesterase (TAIR:AT2G31425.1); Has 11 Blast hits to 11 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G55680.1p  transcript_id AT3G55680.1  protein_id AT3G55680.1p  transcript_id AT3G55680.1  
At3g55690	chr3:020667035	0.0	W/20667035-20667304,20667394-20667829,20667945-20668061,20668146-20668204	AT3G55690.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G39870.1); Has 48 Blast hits to 45 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G55690.1p  transcript_id AT3G55690.1  protein_id AT3G55690.1p  transcript_id AT3G55690.1  
At3g55700	chr3:020671202	0.0	W/20671202-20671691,20672386-20673278	AT3G55700.1  CDS  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT3G55710.1); Has 4494 Blast hits to 4480 proteins in 282 species: Archae - 0; Bacteria - 99; Metazoa - 1664; Fungi - 14; Plants - 2673; Viruses - 24; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT3G55700.1p  transcript_id AT3G55700.1  protein_id AT3G55700.1p  transcript_id AT3G55700.1  
At3g55710	chr3:020673847	0.0	W/20673847-20674330,20674901-20675811	AT3G55710.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT3G55700.1); Has 4764 Blast hits to 4746 proteins in 315 species: Archae - 0; Bacteria - 100; Metazoa - 1850; Fungi - 11; Plants - 2665; Viruses - 111; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT3G55710.1p  transcript_id AT3G55710.1  protein_id AT3G55710.1p  transcript_id AT3G55710.1  
At3g55720	chr3:020679893	0.0	W/20679893-20680198,20680328-20681338	AT3G55720.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF620 (InterPro:IPR006873); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05840.1); Has 107 Blast hits to 105 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G55720.1p  transcript_id AT3G55720.1  protein_id AT3G55720.1p  transcript_id AT3G55720.1  
At3g55730	chr3:020683627	0.0	C/20683627-20683963,20682114-20682976	AT3G55730.1  CDS  gene_syn AtMYB109, MYB109, myb domain protein 109  gene MYB109  function putative transcription factor MYB109 (MYB109) mRNA,  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product MYB109 (myb domain protein 109); DNA binding / transcription factor  note myb domain protein 109 (MYB109); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 8 processes; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB25 (myb domain protein 25); DNA binding / transcription factor (TAIR:AT2G39880.1); Has 6304 Blast hits to 5573 proteins in 360 species: Archae - 0; Bacteria - 0; Metazoa - 728; Fungi - 369; Plants - 3427; Viruses - 6; Other Eukaryotes - 1774 (source: NCBI BLink).  protein_id AT3G55730.1p  transcript_id AT3G55730.1  protein_id AT3G55730.1p  transcript_id AT3G55730.1  
At3g55734	chr3:020691647	0.0	W/20691647-20691806	AT3G55734.1  miRNA  gene_syn AT-MIR393B, MICRORNA393B, MIR393B  gene MIR393B  function Encodes a microRNA that targets several TIR1/AFB family members and one bHLH family member. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCCAAAGGGAUCGCAUUGAUCC. Targets are: F-box proteins and bHLH transcription factor  product MIR393B (MICRORNA393B); miRNA  transcript_id AT3G55734.1  
At3g55735	chr3:020693686	0.0	W/20693686-20693757	AT3G55735.1  tRNA  gene_syn 67296.TRNA-MET-1  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Met (anticodon: CAT)  transcript_id AT3G55735.1  
At3g55740	chr3:020695786	0.0	W/20695786-20695876,20696496-20696720,20696808-20696902,20696983-20697172,20697269-20697393,20697479-20697694,20697780-20698157	AT3G55740.1  CDS  gene_syn ATPROT2, PROLINE TRANSPORTER 2, PROT2  gene PROT2  function Encodes a proline transporter with affinity for gly betaine, proline, and GABA. Protein is expressed most highly in the roots.  go_component plasma membrane|GO:0005886|15618414|IDA  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_process response to water deprivation|GO:0009414|8776904|IEP  go_process response to salt stress|GO:0009651|8776904|IEP  go_process proline transport|GO:0015824|8776904|IGI  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  go_function L-proline transmembrane transporter activity|GO:0015193|8776904|IGI  product PROT2 (PROLINE TRANSPORTER 2); L-proline transmembrane transporter/ amino acid transmembrane transporter  note PROLINE TRANSPORTER 2 (PROT2); FUNCTIONS IN: amino acid transmembrane transporter activity, L-proline transmembrane transporter activity; INVOLVED IN: proline transport, response to salt stress, response to water deprivation, amino acid transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: PROT1 (PROLINE TRANSPORTER 1); L-proline transmembrane transporter/ amino acid transmembrane transporter (TAIR:AT2G39890.2); Has 888 Blast hits to 887 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 114; Fungi - 89; Plants - 662; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT3G55740.1p  transcript_id AT3G55740.1  protein_id AT3G55740.1p  transcript_id AT3G55740.1  
At3g55740	chr3:020696573	0.0	W/20696573-20696720,20696808-20696902,20696983-20697172,20697269-20697393,20697479-20697694,20697780-20698157	AT3G55740.2  CDS  gene_syn ATPROT2, PROLINE TRANSPORTER 2, PROT2  gene PROT2  function Encodes a proline transporter with affinity for gly betaine, proline, and GABA. Protein is expressed most highly in the roots.  go_component plasma membrane|GO:0005886|15618414|IDA  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_process response to water deprivation|GO:0009414|8776904|IEP  go_process response to salt stress|GO:0009651|8776904|IEP  go_process proline transport|GO:0015824|8776904|IGI  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  go_function L-proline transmembrane transporter activity|GO:0015193|8776904|IGI  product PROT2 (PROLINE TRANSPORTER 2); L-proline transmembrane transporter/ amino acid transmembrane transporter  note PROLINE TRANSPORTER 2 (PROT2); FUNCTIONS IN: amino acid transmembrane transporter activity, L-proline transmembrane transporter activity; INVOLVED IN: proline transport, response to salt stress, response to water deprivation, amino acid transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: PROT1 (PROLINE TRANSPORTER 1); L-proline transmembrane transporter/ amino acid transmembrane transporter (TAIR:AT2G39890.2); Has 845 Blast hits to 844 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 76; Plants - 642; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT3G55740.2p  transcript_id AT3G55740.2  protein_id AT3G55740.2p  transcript_id AT3G55740.2  
At3g55750	chr3:020698641	0.0	W/20698641-20698669,20698787-20698822,20699196-20699424,20699512-20699553	AT3G55750.1  CDS  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L35a (RPL35aD)  note 60S ribosomal protein L35a (RPL35aD); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, membrane; EXPRESSED IN: guard cell, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L35Ae (InterPro:IPR001780), Ribosomal protein L35Ae, conserved site (InterPro:IPR018266); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L35a (RPL35aB) (TAIR:AT1G41880.1); Has 539 Blast hits to 539 proteins in 185 species: Archae - 19; Bacteria - 0; Metazoa - 228; Fungi - 97; Plants - 93; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).  protein_id AT3G55750.1p  transcript_id AT3G55750.1  protein_id AT3G55750.1p  transcript_id AT3G55750.1  
At3g55760	chr3:020700648	0.0	W/20700648-20701173,20701261-20701904,20701983-20702173,20702511-20702886	AT3G55760.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  product unknown protein  note unknown protein; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G42430.1); Has 105 Blast hits to 72 proteins in 26 species: Archae - 0; Bacteria - 2; Metazoa - 12; Fungi - 9; Plants - 41; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT3G55760.1p  transcript_id AT3G55760.1  protein_id AT3G55760.1p  transcript_id AT3G55760.1  
At3g55760	chr3:020700648	0.0	W/20700648-20701173,20701261-20701904,20701983-20702173,20702511-20702886	AT3G55760.2  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G42430.1); Has 105 Blast hits to 72 proteins in 26 species: Archae - 0; Bacteria - 2; Metazoa - 12; Fungi - 9; Plants - 41; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT3G55760.2p  transcript_id AT3G55760.2  protein_id AT3G55760.2p  transcript_id AT3G55760.2  
At3g55770	chr3:020703799	0.0	W/20703799-20703933,20704085-20704184,20704283-20704317,20704411-20704500,20704591-20704614	AT3G55770.6  CDS  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product LIM domain-containing protein  note LIM domain-containing protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781); BEST Arabidopsis thaliana protein match is: LIM domain-containing protein (TAIR:AT2G39900.1).  protein_id AT3G55770.6p  transcript_id AT3G55770.6  protein_id AT3G55770.6p  transcript_id AT3G55770.6  
At3g55770	chr3:020703799	0.0	W/20703799-20703933,20704085-20704184,20704283-20704317,20704411-20704500,20704876-20705115	AT3G55770.1  CDS  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product LIM domain-containing protein  note LIM domain-containing protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781); BEST Arabidopsis thaliana protein match is: LIM domain-containing protein (TAIR:AT2G39900.1); Has 4177 Blast hits to 2942 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 3497; Fungi - 56; Plants - 295; Viruses - 0; Other Eukaryotes - 329 (source: NCBI BLink).  protein_id AT3G55770.1p  transcript_id AT3G55770.1  protein_id AT3G55770.1p  transcript_id AT3G55770.1  
At3g55770	chr3:020703799	0.0	W/20703799-20703933,20704085-20704184,20704283-20704317,20704411-20704500,20704876-20705115	AT3G55770.2  CDS  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product LIM domain-containing protein  note LIM domain-containing protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781); BEST Arabidopsis thaliana protein match is: LIM domain-containing protein (TAIR:AT2G39900.1); Has 4177 Blast hits to 2942 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 3497; Fungi - 56; Plants - 295; Viruses - 0; Other Eukaryotes - 329 (source: NCBI BLink).  protein_id AT3G55770.2p  transcript_id AT3G55770.2  protein_id AT3G55770.2p  transcript_id AT3G55770.2  
At3g55770	chr3:020703799	0.0	W/20703799-20703933,20704085-20704184,20704283-20704317,20704411-20704500,20704876-20705115	AT3G55770.3  CDS  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product LIM domain-containing protein  note LIM domain-containing protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781); BEST Arabidopsis thaliana protein match is: LIM domain-containing protein (TAIR:AT2G39900.1); Has 4177 Blast hits to 2942 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 3497; Fungi - 56; Plants - 295; Viruses - 0; Other Eukaryotes - 329 (source: NCBI BLink).  protein_id AT3G55770.3p  transcript_id AT3G55770.3  protein_id AT3G55770.3p  transcript_id AT3G55770.3  
At3g55770	chr3:020703799	0.0	W/20703799-20703933,20704085-20704184,20704283-20704317,20704411-20704500,20704876-20705115	AT3G55770.4  CDS  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product LIM domain-containing protein  note LIM domain-containing protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781); BEST Arabidopsis thaliana protein match is: LIM domain-containing protein (TAIR:AT2G39900.1); Has 4177 Blast hits to 2942 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 3497; Fungi - 56; Plants - 295; Viruses - 0; Other Eukaryotes - 329 (source: NCBI BLink).  protein_id AT3G55770.4p  transcript_id AT3G55770.4  protein_id AT3G55770.4p  transcript_id AT3G55770.4  
At3g55770	chr3:020703799	0.0	W/20703799-20703933,20704085-20704184,20704283-20704317,20704411-20704500,20704876-20705115	AT3G55770.5  CDS  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product LIM domain-containing protein  note LIM domain-containing protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781); BEST Arabidopsis thaliana protein match is: LIM domain-containing protein (TAIR:AT2G39900.1); Has 4177 Blast hits to 2942 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 3497; Fungi - 56; Plants - 295; Viruses - 0; Other Eukaryotes - 329 (source: NCBI BLink).  protein_id AT3G55770.5p  transcript_id AT3G55770.5  protein_id AT3G55770.5p  transcript_id AT3G55770.5  
At3g55780	chr3:020705627	0.0	W/20705627-20706745,20706851-20707021	AT3G55780.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, embryo, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT3G61810.1); Has 1370 Blast hits to 1361 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 1363; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G55780.1p  transcript_id AT3G55780.1  protein_id AT3G55780.1p  transcript_id AT3G55780.1  
At3g55790	chr3:020708280	0.0	W/20708280-20708591	AT3G55790.1  CDS  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; Has 676 Blast hits to 510 proteins in 100 species: Archae - 0; Bacteria - 88; Metazoa - 317; Fungi - 25; Plants - 173; Viruses - 2; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT3G55790.1p  transcript_id AT3G55790.1  protein_id AT3G55790.1p  transcript_id AT3G55790.1  
At3g55795	chr3:020709173	0.0	W/20709173-20709244	AT3G55795.1  tRNA  gene_syn 67296.TRNA-MET-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Met (anticodon: CAT)  transcript_id AT3G55795.1  
At3g55800	chr3:020709640	0.0	W/20709640-20709753,20709843-20709968,20710060-20710245,20710337-20710418,20710509-20710730,20710806-20710906,20710986-20711057,20711143-20711421	AT3G55800.1  CDS  gene_syn SBPASE, sedoheptulose-bisphosphatase  gene SBPASE  function Encodes the chloroplast enzyme sedoheptulose-1,7-bisphosphatase (SBPase), involved in the carbon reduction of the Calvin cycle. Increase in SBPase activity in transgenic lines accumulate up to 50% more sucrose and starch than wild-type.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_process carbohydrate metabolic process|GO:0005975||ISS  go_process sucrose biosynthetic process|GO:0005986|15863701|IDA  go_process carbohydrate biosynthetic process|GO:0016051|15863701|IDA  go_process starch biosynthetic process|GO:0019252|15863701|IDA  go_process reductive pentose-phosphate cycle|GO:0019253|7811976|ISS  go_function phosphoric ester hydrolase activity|GO:0042578||ISS  go_function sedoheptulose-bisphosphatase activity|GO:0050278|15863701|IMP  product SBPASE (sedoheptulose-bisphosphatase); phosphoric ester hydrolase/ sedoheptulose-bisphosphatase  note sedoheptulose-bisphosphatase (SBPASE); FUNCTIONS IN: sedoheptulose-bisphosphatase activity, phosphoric ester hydrolase activity; INVOLVED IN: in 6 processes; LOCATED IN: thylakoid, apoplast, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Inositol monophosphatase/Fructose-1,6-bisphosphatase (InterPro:IPR017955), Fructose-1,6-bisphosphatase (InterPro:IPR000146); BEST Arabidopsis thaliana protein match is: fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative (TAIR:AT1G43670.1); Has 2297 Blast hits to 2293 proteins in 803 species: Archae - 22; Bacteria - 1217; Metazoa - 313; Fungi - 108; Plants - 250; Viruses - 0; Other Eukaryotes - 387 (source: NCBI BLink).  protein_id AT3G55800.1p  transcript_id AT3G55800.1  protein_id AT3G55800.1p  transcript_id AT3G55800.1  
At3g55810	chr3:020713116	0.0	C/20713116-20713236,20711705-20713062	AT3G55810.1  CDS  go_process glycolysis|GO:0006096||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function catalytic activity|GO:0003824||IEA  go_function pyruvate kinase activity|GO:0004743||IEA  go_function potassium ion binding|GO:0030955||IEA  go_process glycolysis|GO:0006096||ISS  go_function pyruvate kinase activity|GO:0004743||ISS  product pyruvate kinase, putative  note pyruvate kinase, putative; FUNCTIONS IN: pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity; INVOLVED IN: glycolysis; CONTAINS InterPro DOMAIN/s: Pyruvate kinase, C-terminal-like (InterPro:IPR015795), Pyruvate kinase, active site (InterPro:IPR018209), Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), Pyruvate kinase, alpha/beta (InterPro:IPR015794), Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate kinase (InterPro:IPR001697), Pyruvate kinase, barrel (InterPro:IPR015793); BEST Arabidopsis thaliana protein match is: pyruvate kinase, putative (TAIR:AT3G55650.1); Has 6559 Blast hits to 6530 proteins in 1518 species: Archae - 98; Bacteria - 3191; Metazoa - 476; Fungi - 169; Plants - 279; Viruses - 0; Other Eukaryotes - 2346 (source: NCBI BLink).  protein_id AT3G55810.1p  transcript_id AT3G55810.1  protein_id AT3G55810.1p  transcript_id AT3G55810.1  
At3g55820	chr3:020714041	0.0	W/20714041-20714655	AT3G55820.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); Has 18 Blast hits to 18 proteins in 7 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G55820.1p  transcript_id AT3G55820.1  protein_id AT3G55820.1p  transcript_id AT3G55820.1  
At3g55830	chr3:020715101	0.0	W/20715101-20715312,20715873-20716269,20716537-20716700,20716797-20716867,20716973-20717133	AT3G55830.1  CDS  gene_syn ECTOPICALLY PARTING CELLS, EPC1  gene EPC1  function A member of the Glycosyltransferase Family 64, homologous to Poplar cambium-expressed GT64 gene. The EPC1 protein plays a critical role during plant development in maintaining the integrity of organs via cell-cell adhesion, thereby providing mechanical strength and facilitating the movement of metabolites throughout the plant.  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process phloem or xylem histogenesis|GO:0010087|16045474|IMP  go_process cell-cell adhesion|GO:0016337|16045474|IMP  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function UDP-glucosyltransferase activity|GO:0035251|16045474|ISS  product EPC1 (ECTOPICALLY PARTING CELLS); UDP-glucosyltransferase/ transferase, transferring glycosyl groups  note ECTOPICALLY PARTING CELLS (EPC1); FUNCTIONS IN: UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: phloem or xylem histogenesis, cell-cell adhesion; LOCATED IN: Golgi apparatus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EXTL2, alpha-1,4-N-acetylhexosaminyltransferase (InterPro:IPR015338); BEST Arabidopsis thaliana protein match is: glycosyltransferase family protein 47 (TAIR:AT5G04500.1); Has 509 Blast hits to 509 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 433; Fungi - 2; Plants - 48; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT3G55830.1p  transcript_id AT3G55830.1  protein_id AT3G55830.1p  transcript_id AT3G55830.1  
At3g55840	chr3:020717530	0.0	C/20717530-20718816	AT3G55840.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Hs1pro-1, C-terminal (InterPro:IPR009743), Hs1pro-1, N-terminal (InterPro:IPR009869); BEST Arabidopsis thaliana protein match is: HSPRO2 (ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2) (TAIR:AT2G40000.1); Has 43 Blast hits to 43 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G55840.1p  transcript_id AT3G55840.1  protein_id AT3G55840.1p  transcript_id AT3G55840.1  
At3g55850	chr3:020725411	0.0	C/20725411-20725489,20725162-20725325,20724923-20725024,20724649-20724721,20724353-20724459,20724154-20724277,20723826-20724020,20723579-20723664,20723122-20723229,20722865-20722960,20722684-20722782,20722516-20722590,20722311-20722442,20722117-20722232,20721866-20722040	AT3G55850.1  CDS  gene_syn LAF3, LAF3 ISF1, LAF3 ISF2, LAF3 ISOFORM 2, LONG AFTER FAR-RED 3, LONG AFTER FAR-RED 3 ISOFORM 1  gene LAF3  function Encodes a product that might regulate nucleo-cytoplasmic trafficking of an intermediate(s) involved in phyA signal transduction. Differs from isoform 2 only in the first few N-terminal amino acids.  go_function hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds|GO:0016810||IEA  go_component perinuclear region of cytoplasm|GO:0048471|14645728|IDA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product LAF3 (LONG AFTER FAR-RED 3); hydrolase/ hydrolase, acting on carbon-nitrogen (but not peptide) bonds  note LAF3 ISOFORM 2 (LAF3 ISF2); FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds; INVOLVED IN: biological_process unknown; LOCATED IN: perinuclear region of cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amidohydrolase 3 (InterPro:IPR013108), Metal-dependent hydrolase, composite (InterPro:IPR011059); Has 3670 Blast hits to 3654 proteins in 658 species: Archae - 51; Bacteria - 2002; Metazoa - 22; Fungi - 120; Plants - 25; Viruses - 0; Other Eukaryotes - 1450 (source: NCBI BLink).  protein_id AT3G55850.1p  transcript_id AT3G55850.1  protein_id AT3G55850.1p  transcript_id AT3G55850.1  
At3g55850	chr3:020725563	0.0	C/20725563-20725608,20725411-20725464,20725162-20725325,20724923-20725024,20724649-20724721,20724353-20724459,20724154-20724277,20723826-20724020,20723579-20723664,20723122-20723229,20722865-20722960,20722684-20722782,20722516-20722590,20722311-20722442,20722117-20722232,20721866-20722040	AT3G55850.2  CDS  gene_syn LAF3, LAF3 ISF1, LAF3 ISF2, LAF3 ISOFORM 2, LONG AFTER FAR-RED 3, LONG AFTER FAR-RED 3 ISOFORM 1  gene LAF3  function Encodes a product that might regulate nucleo-cytoplasmic trafficking of an intermediate(s) involved in phyA signal transduction. Differs from isoform 2 only in the first few N-terminal amino acids.  go_function hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds|GO:0016810||IEA  go_component perinuclear region of cytoplasm|GO:0048471|14645728|IDA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product LAF3 (LONG AFTER FAR-RED 3); hydrolase/ hydrolase, acting on carbon-nitrogen (but not peptide) bonds  note LONG AFTER FAR-RED 3 (LAF3); FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds; INVOLVED IN: biological_process unknown; LOCATED IN: perinuclear region of cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amidohydrolase 3 (InterPro:IPR013108), Metal-dependent hydrolase, composite (InterPro:IPR011059); Has 3672 Blast hits to 3656 proteins in 658 species: Archae - 51; Bacteria - 2002; Metazoa - 22; Fungi - 120; Plants - 25; Viruses - 0; Other Eukaryotes - 1452 (source: NCBI BLink).  protein_id AT3G55850.2p  transcript_id AT3G55850.2  protein_id AT3G55850.2p  transcript_id AT3G55850.2  
At3g55860	chr3:020728857	0.0	C/20728857-20728962,20728558-20728766,20728403-20728476,20728134-20728199,20727836-20727845	AT3G55860.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G55860.1p  transcript_id AT3G55860.1  protein_id AT3G55860.1p  transcript_id AT3G55860.1  
At3g55870	chr3:020731326	0.0	W/20731326-20731390,20731477-20731655,20731776-20731927,20732012-20732127,20732223-20732469,20732558-20732614,20732705-20732857,20733045-20733125,20733252-20733338,20733424-20733765	AT3G55870.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process tryptophan biosynthetic process|GO:0000162||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function anthranilate synthase activity|GO:0004049||IEA  go_function oxo-acid-lyase activity|GO:0016833||IEA  product anthranilate synthase, alpha subunit, putative  note anthranilate synthase, alpha subunit, putative; FUNCTIONS IN: oxo-acid-lyase activity, anthranilate synthase activity; INVOLVED IN: tryptophan biosynthetic process, biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, sepal, flower, carpel, cultured cell; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Anthranilate synthase component I, N-terminal (InterPro:IPR006805), Chorismate binding, C-terminal (InterPro:IPR015890), Anthranilate synthase component I and chorismate binding protein (InterPro:IPR005801), Anthranilate synthase component I (InterPro:IPR005256); BEST Arabidopsis thaliana protein match is: ASA1 (ANTHRANILATE SYNTHASE ALPHA SUBUNIT 1); anthranilate synthase (TAIR:AT5G05730.1); Has 10567 Blast hits to 10566 proteins in 1353 species: Archae - 159; Bacteria - 5734; Metazoa - 4; Fungi - 204; Plants - 112; Viruses - 0; Other Eukaryotes - 4354 (source: NCBI BLink).  protein_id AT3G55870.1p  transcript_id AT3G55870.1  protein_id AT3G55870.1p  transcript_id AT3G55870.1  
At3g55880	chr3:020736682	0.0	W/20736682-20736994,20737316-20737584,20738260-20738325	AT3G55880.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40095.1); Has 53 Blast hits to 53 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G55880.2p  transcript_id AT3G55880.2  protein_id AT3G55880.2p  transcript_id AT3G55880.2  
At3g55880	chr3:020736682	0.0	W/20736682-20736994,20737316-20737599	AT3G55880.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40095.1); Has 53 Blast hits to 53 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G55880.1p  transcript_id AT3G55880.1  protein_id AT3G55880.1p  transcript_id AT3G55880.1  
At3g55890	chr3:020740908	0.0	W/20740908-20741003,20741293-20741336,20741421-20741529,20741626-20741681,20741808-20741868	AT3G55890.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product yippee family protein  note yippee family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Yippee-like protein (InterPro:IPR004910); BEST Arabidopsis thaliana protein match is: yippee family protein (TAIR:AT2G40110.1); Has 696 Blast hits to 696 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 399; Fungi - 132; Plants - 111; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT3G55890.1p  transcript_id AT3G55890.1  protein_id AT3G55890.1p  transcript_id AT3G55890.1  
At3g55900	chr3:020742330	0.0	C/20742330-20742653	AT3G55900.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); Has 33 Blast hits to 33 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G55900.1p  transcript_id AT3G55900.1  protein_id AT3G55900.1p  transcript_id AT3G55900.1  
At3g55910	chr3:020742900	0.0	W/20742900-20743052,20743146-20743274	AT3G55910.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G55910.1p  transcript_id AT3G55910.1  protein_id AT3G55910.1p  transcript_id AT3G55910.1  
At3g55920	chr3:020744969	0.0	C/20744969-20745049,20744812-20744877,20744668-20744737,20744354-20744401,20744232-20744255,20743930-20744112,20743765-20743840,20743529-20743667	AT3G55920.1  CDS  go_component plasma membrane|GO:0005886|17644812|IDA  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||IEA  go_process protein folding|GO:0006457||ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative  note peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: CYP5 (CYCLOPHILIN 5); peptidyl-prolyl cis-trans isomerase (TAIR:AT2G29960.1); Has 11444 Blast hits to 11423 proteins in 1516 species: Archae - 82; Bacteria - 3675; Metazoa - 2381; Fungi - 963; Plants - 746; Viruses - 4; Other Eukaryotes - 3593 (source: NCBI BLink).  protein_id AT3G55920.1p  transcript_id AT3G55920.1  protein_id AT3G55920.1p  transcript_id AT3G55920.1  
At3g55930	chr3:020746535	0.0	C/20746535-20746964,20745382-20746265	AT3G55930.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product RNA splicing factor-related  note RNA splicing factor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pre-mRNA-splicing factor 3 (InterPro:IPR013881); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein family protein / snRNP family protein (TAIR:AT1G28060.1); Has 410 Blast hits to 388 proteins in 147 species: Archae - 0; Bacteria - 8; Metazoa - 131; Fungi - 97; Plants - 36; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).  protein_id AT3G55930.1p  transcript_id AT3G55930.1  protein_id AT3G55930.1p  transcript_id AT3G55930.1  
At3g55940	chr3:020747787	0.0	W/20747787-20748086,20748169-20748365,20748450-20748585,20748661-20748897,20748972-20749213,20749292-20749409,20749501-20749644,20749726-20749812,20749891-20750184	AT3G55940.1  CDS  go_component plasma membrane|GO:0005886|14506206|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_process signal transduction|GO:0007165||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_function phosphoinositide phospholipase C activity|GO:0004435||IEA  go_function phospholipase C activity|GO:0004629||IEA  go_function phosphoric diester hydrolase activity|GO:0008081||IEA  go_process signal transduction|GO:0007165||ISS  go_function phospholipase C activity|GO:0004629||ISS  product phosphoinositide-specific phospholipase C, putative  note phosphoinositide-specific phospholipase C, putative; FUNCTIONS IN: phosphoinositide phospholipase C activity, phospholipase C activity, phosphoric diester hydrolase activity; INVOLVED IN: signal transduction, intracellular signaling cascade, lipid metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific , X region (InterPro:IPR000909), Phospholipase C, phosphoinositol-specific, EF-hand-like (InterPro:IPR015359), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phospholipase C, phosphoinositol-specific, C-terminal (PLC) (InterPro:IPR001192), C2 calcium-dependent membrane targeting (InterPro:IPR000008), Phospholipase C, phosphatidylinositol-specific, Y domain (InterPro:IPR001711); BEST Arabidopsis thaliana protein match is: ATPLC2 (PHOSPHOLIPASE C 2); phospholipase C (TAIR:AT3G08510.2); Has 6686 Blast hits to 2964 proteins in 282 species: Archae - 0; Bacteria - 594; Metazoa - 3312; Fungi - 887; Plants - 379; Viruses - 42; Other Eukaryotes - 1472 (source: NCBI BLink).  protein_id AT3G55940.1p  transcript_id AT3G55940.1  protein_id AT3G55940.1p  transcript_id AT3G55940.1  
At3g55950	chr3:020753903	0.0	C/20753903-20756347	AT3G55950.1  CDS  gene_syn ARABIDOPSIS THALIANA CRINKLY4 RELATED 3, CCR3  gene CCR3  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product CCR3 (ARABIDOPSIS THALIANA CRINKLY4 RELATED 3); kinase  note ARABIDOPSIS THALIANA CRINKLY4 RELATED 3 (CCR3); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CCR4 (ARABIDOPSIS THALIANA CRINKLY4 RELATED 4); kinase (TAIR:AT5G47850.1); Has 85214 Blast hits to 83448 proteins in 2972 species: Archae - 54; Bacteria - 7430; Metazoa - 36680; Fungi - 6563; Plants - 18996; Viruses - 574; Other Eukaryotes - 14917 (source: NCBI BLink).  protein_id AT3G55950.1p  transcript_id AT3G55950.1  protein_id AT3G55950.1p  transcript_id AT3G55950.1  
At3g55960	chr3:020762596	0.0	C/20762596-20762892,20761674-20761802,20761467-20761587,20761278-20761359,20761024-20761177,20760797-20760931	AT3G55960.1  CDS  go_function phosphatase activity|GO:0016791||IEA  go_process biological_process|GO:0008150||ND  product NLI interacting factor (NIF) family protein  note NLI interacting factor (NIF) family protein; FUNCTIONS IN: phosphatase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Dullard-like phosphatase domain (InterPro:IPR011948), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: NLI interacting factor (NIF) family protein (TAIR:AT1G29780.1); Has 1602 Blast hits to 1601 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 629; Fungi - 284; Plants - 140; Viruses - 0; Other Eukaryotes - 549 (source: NCBI BLink).  protein_id AT3G55960.1p  transcript_id AT3G55960.1  protein_id AT3G55960.1p  transcript_id AT3G55960.1  
At3g55970	chr3:020768759	0.0	C/20768759-20769264,20768060-20768396,20766970-20767218	AT3G55970.1  CDS  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, iron ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT5G05600.1); Has 6100 Blast hits to 6067 proteins in 692 species: Archae - 0; Bacteria - 722; Metazoa - 115; Fungi - 685; Plants - 3108; Viruses - 0; Other Eukaryotes - 1470 (source: NCBI BLink).  protein_id AT3G55970.1p  transcript_id AT3G55970.1  protein_id AT3G55970.1p  transcript_id AT3G55970.1  
At3g55980	chr3:020776857	0.0	W/20776857-20778599	AT3G55980.1  CDS  gene_syn ATSZF1, SALT-INDUCIBLE ZINC FINGER 1, SZF1  gene SZF1  go_component cellular_component|GO:0005575||ND  go_process response to chitin|GO:0010200|17722694|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product SZF1 (SALT-INDUCIBLE ZINC FINGER 1); transcription factor  note SALT-INDUCIBLE ZINC FINGER 1 (SZF1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to chitin, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: CZF1; transcription factor (TAIR:AT2G40140.2); Has 1281 Blast hits to 1076 proteins in 129 species: Archae - 2; Bacteria - 37; Metazoa - 725; Fungi - 18; Plants - 246; Viruses - 2; Other Eukaryotes - 251 (source: NCBI BLink).  protein_id AT3G55980.1p  transcript_id AT3G55980.1  protein_id AT3G55980.1p  transcript_id AT3G55980.1  
At3g55990	chr3:020780410	0.0	W/20780410-20780993,20781097-20781268,20781407-20781606,20781705-20781863,20782583-20782931	AT3G55990.1  CDS  gene_syn ESK1, ESKIMO 1  gene ESK1  function Encodes ESK1 (Eskimo1). A member of a large gene family of DUF231 domain proteins whose members encode a total of 45 proteins of unknown function. ESK1 functions as a negative regulator of cold acclimation. Mutations in the ESK1 gene provides strong freezing tolerance.  go_component cellular_component|GO:0005575||ND  go_process response to cold|GO:0009409|9636231|IMP  go_process positive regulation of transcription|GO:0045941|9636231|IEP  go_function molecular_function|GO:0003674||ND  go_process response to water deprivation|GO:0009414|17316173|IMP  go_process response to salt stress|GO:0009651|17316173|IMP  go_process response to freezing|GO:0050826|17316173|IMP  product ESK1 (ESKIMO 1)  note ESKIMO 1 (ESK1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to freezing, response to salt stress, response to water deprivation, positive regulation of transcription, response to cold; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, fruit, flower, root, leaf; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40150.1); Has 713 Blast hits to 695 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 713; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G55990.1p  transcript_id AT3G55990.1  protein_id AT3G55990.1p  transcript_id AT3G55990.1  
At3g56000	chr3:020785370	0.0	C/20785370-20785684,20785186-20785284,20784816-20785077,20784617-20784727,20784395-20784531,20784206-20784319,20783720-20784108,20783462-20783642	AT3G56000.1  CDS  gene_syn ATCSLA14, CELLULOSE SYNTHASE LIKE A14, CSLA14  gene ATCSLA14  function encodes a gene similar to cellulose synthase  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  product ATCSLA14; cellulose synthase/ transferase, transferring glycosyl groups  note ATCSLA14; FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: ATCSLA03 (CELLULOSE SYNTHASE-LIKE A3); cellulose synthase/ transferase, transferring glycosyl groups (TAIR:AT1G23480.2); Has 2686 Blast hits to 2681 proteins in 748 species: Archae - 101; Bacteria - 1926; Metazoa - 7; Fungi - 72; Plants - 295; Viruses - 11; Other Eukaryotes - 274 (source: NCBI BLink).  protein_id AT3G56000.1p  transcript_id AT3G56000.1  protein_id AT3G56000.1p  transcript_id AT3G56000.1  
At3g56010	chr3:020788758	0.0	W/20788758-20788793,20789087-20789656	AT3G56010.1  CDS  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 9 Blast hits to 9 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G56010.1p  transcript_id AT3G56010.1  protein_id AT3G56010.1p  transcript_id AT3G56010.1  
At3g56020	chr3:020791032	0.0	C/20791032-20791043,20790826-20790891	AT3G56020.1  CDS  gene_syn F27K19.200  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L41 (RPL41G)  note 60S ribosomal protein L41 (RPL41G); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, ribosome; CONTAINS InterPro DOMAIN/s: Ribosomal protein L41 (InterPro:IPR007836); Has 170 Blast hits to 170 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 77; Fungi - 35; Plants - 49; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G56020.1p  transcript_id AT3G56020.1  protein_id AT3G56020.1p  transcript_id AT3G56020.1  
At3g56030	chr3:020791259	0.0	W/20791259-20792314	AT3G56030.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G40240.1); Has 6707 Blast hits to 2251 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 57; Fungi - 13; Plants - 6562; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT3G56030.1p  transcript_id AT3G56030.1  protein_id AT3G56030.1p  transcript_id AT3G56030.1  
At3g56040	chr3:020796761	0.0	C/20796761-20797482,20796469-20796646,20796238-20796387,20795935-20796096,20795657-20795829,20795506-20795572,20794982-20795148,20794565-20794723,20794214-20794305,20794042-20794136,20793825-20793902,20793649-20793744,20793474-20793548,20793299-20793390,20793047-20793209,20792905-20792965,20792689-20792810	AT3G56040.1  CDS  gene_syn UDP-GLUCOSE PYROPHOSPHORYLASE 3, UGP3  gene UGP3  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product UGP3 (UDP-GLUCOSE PYROPHOSPHORYLASE 3)  note UDP-GLUCOSE PYROPHOSPHORYLASE 3 (UGP3); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 118 Blast hits to 116 proteins in 55 species: Archae - 0; Bacteria - 6; Metazoa - 10; Fungi - 36; Plants - 45; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT3G56040.1p  transcript_id AT3G56040.1  protein_id AT3G56040.1p  transcript_id AT3G56040.1  
At3g56050	chr3:020800601	0.0	C/20800601-20800706,20800451-20800511,20799541-20799953,20799225-20799415,20799010-20799142,20798322-20798917	AT3G56050.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G40270.1); Has 27201 Blast hits to 26977 proteins in 983 species: Archae - 2; Bacteria - 1104; Metazoa - 10204; Fungi - 529; Plants - 12748; Viruses - 142; Other Eukaryotes - 2472 (source: NCBI BLink).  protein_id AT3G56050.1p  transcript_id AT3G56050.1  protein_id AT3G56050.1p  transcript_id AT3G56050.1  
At3g56050	chr3:020800601	0.0	C/20800601-20800706,20800451-20800511,20799541-20799953,20799225-20799415,20799010-20799142,20798322-20798917	AT3G56050.2  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G40270.1); Has 27201 Blast hits to 26977 proteins in 983 species: Archae - 2; Bacteria - 1104; Metazoa - 10204; Fungi - 529; Plants - 12748; Viruses - 142; Other Eukaryotes - 2472 (source: NCBI BLink).  protein_id AT3G56050.2p  transcript_id AT3G56050.2  protein_id AT3G56050.2p  transcript_id AT3G56050.2  
At3g56060	chr3:020805902	0.0	C/20805902-20805983,20805133-20805774,20804116-20804522,20803488-20804026,20803328-20803391	AT3G56060.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process cellular alcohol metabolic process|GO:0006066||IEA  go_function oxidoreductase activity, acting on CH-OH group of donors|GO:0016614||IEA  go_function FAD binding|GO:0050660||IEA  go_function aldehyde-lyase activity|GO:0016832||ISS  product glucose-methanol-choline (GMC) oxidoreductase family protein  note glucose-methanol-choline (GMC) oxidoreductase family protein; FUNCTIONS IN: aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding; INVOLVED IN: cellular alcohol metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Glucose-methanol-choline oxidoreductase (InterPro:IPR012132), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867); BEST Arabidopsis thaliana protein match is: glucose-methanol-choline (GMC) oxidoreductase family protein (TAIR:AT5G51950.1); Has 8246 Blast hits to 8129 proteins in 681 species: Archae - 2; Bacteria - 2348; Metazoa - 724; Fungi - 1039; Plants - 126; Viruses - 15; Other Eukaryotes - 3992 (source: NCBI BLink).  protein_id AT3G56060.1p  transcript_id AT3G56060.1  protein_id AT3G56060.1p  transcript_id AT3G56060.1  
At3g56070	chr3:020806987	0.0	C/20806987-20807517	AT3G56070.1  CDS  gene_syn ROC2, ROTAMASE CYCLOPHILIN 2, ROTAMASE CYP 2  gene ROC2  function rotamase cyclophilin 2 (ROC2) exhibiting peptidyl-prolyl cis-trans isomerase activity involved in signal transduction.  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytosol|GO:0005829|9426607|ISS  go_process protein folding|GO:0006457||ISS  go_process signal transduction|GO:0007165|9426607|ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755|9426607|ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  go_function cyclosporin A binding|GO:0016018|9426607|ISS  product ROC2 (ROTAMASE CYCLOPHILIN 2); cyclosporin A binding / peptidyl-prolyl cis-trans isomerase  note ROTAMASE CYCLOPHILIN 2 (ROC2); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity, cyclosporin A binding; INVOLVED IN: protein folding, response to cadmium ion, signal transduction; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: ROC3; peptidyl-prolyl cis-trans isomerase (TAIR:AT2G16600.1); Has 11648 Blast hits to 11630 proteins in 1512 species: Archae - 82; Bacteria - 3668; Metazoa - 2402; Fungi - 955; Plants - 730; Viruses - 4; Other Eukaryotes - 3807 (source: NCBI BLink).  protein_id AT3G56070.1p  transcript_id AT3G56070.1  protein_id AT3G56070.1p  transcript_id AT3G56070.1  
At3g56070	chr3:020806987	0.0	C/20806987-20807517	AT3G56070.2  CDS  gene_syn ROC2, ROTAMASE CYCLOPHILIN 2, ROTAMASE CYP 2  gene ROC2  function rotamase cyclophilin 2 (ROC2) exhibiting peptidyl-prolyl cis-trans isomerase activity involved in signal transduction.  go_component cytosol|GO:0005829|9426607|ISS  go_process protein folding|GO:0006457||ISS  go_process signal transduction|GO:0007165|9426607|ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755|9426607|ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  go_function cyclosporin A binding|GO:0016018|9426607|ISS  product ROC2 (ROTAMASE CYCLOPHILIN 2); cyclosporin A binding / peptidyl-prolyl cis-trans isomerase  note ROTAMASE CYCLOPHILIN 2 (ROC2); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity, cyclosporin A binding; INVOLVED IN: protein folding, signal transduction; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: ROC3; peptidyl-prolyl cis-trans isomerase (TAIR:AT2G16600.1); Has 11648 Blast hits to 11630 proteins in 1512 species: Archae - 82; Bacteria - 3668; Metazoa - 2402; Fungi - 955; Plants - 730; Viruses - 4; Other Eukaryotes - 3807 (source: NCBI BLink).  protein_id AT3G56070.2p  transcript_id AT3G56070.2  protein_id AT3G56070.2p  transcript_id AT3G56070.2  
At3g56080	chr3:020811889	0.0	C/20811889-20812054,20811687-20811797,20811414-20811585,20811070-20811315,20810795-20810989,20810526-20810709	AT3G56080.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product dehydration-responsive protein-related  note dehydration-responsive protein-related; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive family protein (TAIR:AT2G40280.1); Has 619 Blast hits to 598 proteins in 99 species: Archae - 0; Bacteria - 144; Metazoa - 1; Fungi - 1; Plants - 467; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G56080.1p  transcript_id AT3G56080.1  protein_id AT3G56080.1p  transcript_id AT3G56080.1  
At3g56085	chr3:020813517	0.0	C/20813517-20813589	AT3G56085.1  tRNA  gene_syn 67298.TRNA-LYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Lys (anticodon: CTT)  transcript_id AT3G56085.1  
At3g56090	chr3:020815674	0.0	C/20815674-20815984,20815424-20815507,20815271-20815331,20815083-20815170,20814817-20814878,20814649-20814714,20814482-20814545,20814350-20814393	AT3G56090.1  CDS  gene_syn ATFER3, ferritin 3  gene ATFER3  function Encodes FERRITIN 3, AtFER3. Ferritins are a class of 24-mer multi-meric proteins found in all kingdoms of life. Function as the main iron store in mammals. Evidence suggests that Arabidopsis ferritins are essential to protect cells against oxidative damage, but they do not constitute the major iron pool.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function binding|GO:0005488||IEA  go_function ferric iron binding|GO:0008199||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function transition metal ion binding|GO:0046914||IEA  go_component chloroplast|GO:0009507|11672431|ISS  go_process response to reactive oxygen species|GO:0000302|18826427|IGI  go_process iron ion transport|GO:0006826|18826427|IGI  go_process iron ion transport|GO:0006826||ISS  go_process cellular iron ion homeostasis|GO:0006879||ISS  go_process flower development|GO:0009908|18826427|IGI  go_process response to iron ion|GO:0010039|11672431|IEP  go_process photosynthesis|GO:0015979|18826427|IGI  go_process leaf development|GO:0048366|18826427|IGI  go_process iron ion homeostasis|GO:0055072|18826427|IGI  go_function ferric iron binding|GO:0008199||ISS  product ATFER3 (ferritin 3); binding / ferric iron binding / oxidoreductase/ transition metal ion binding  note ferritin 3 (ATFER3); FUNCTIONS IN: oxidoreductase activity, ferric iron binding, binding, transition metal ion binding; INVOLVED IN: in 8 processes; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ferritin, N-terminal (InterPro:IPR001519), Ferritin-related (InterPro:IPR012347), Ferritin, conserved site (InterPro:IPR014034), Ferritin-like (InterPro:IPR009040), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078), Ferritin and Dps (InterPro:IPR008331); BEST Arabidopsis thaliana protein match is: ATFER4 (ferritin 4); binding / ferric iron binding / oxidoreductase/ transition metal ion binding (TAIR:AT2G40300.1); Has 2732 Blast hits to 2727 proteins in 759 species: Archae - 121; Bacteria - 1074; Metazoa - 1123; Fungi - 6; Plants - 218; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink).  protein_id AT3G56090.1p  transcript_id AT3G56090.1  protein_id AT3G56090.1p  transcript_id AT3G56090.1  
At3g56100	chr3:020818787	0.0	C/20818787-20819517,20817935-20818674,20817792-20817851,20817074-20817702	AT3G56100.1  CDS  gene_syn IMK3, MERISTEMATIC RECEPTOR-LIKE KINASE, MRLK  gene MRLK  function Protein kinase expressed in meristematic cells. Phosphorylates AGL24.  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component membrane|GO:0016020||NAS  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein kinase activity|GO:0004672||NAS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function protein binding|GO:0005515||NAS  go_function ATP binding|GO:0005524||ISS  product MRLK (MERISTEMATIC RECEPTOR-LIKE KINASE); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase  note MERISTEMATIC RECEPTOR-LIKE KINASE (MRLK); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: IMK2 (INFLORESCENCE MERISTEM RECEPTOR-LIKE KINASE 2); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT3G51740.1); Has 105464 Blast hits to 78057 proteins in 2140 species: Archae - 67; Bacteria - 7472; Metazoa - 39788; Fungi - 5453; Plants - 38752; Viruses - 322; Other Eukaryotes - 13610 (source: NCBI BLink).  protein_id AT3G56100.1p  transcript_id AT3G56100.1  protein_id AT3G56100.1p  transcript_id AT3G56100.1  
At3g56110	chr3:020822228	0.0	C/20822228-20822857	AT3G56110.1  CDS  gene_syn PRA1.B1, PRENYLATED RAB ACCEPTOR 1.B1  gene PRA1.B1  go_component endoplasmic reticulum|GO:0005783|18583532|IDA  go_process vesicle-mediated transport|GO:0016192|18583532|IDA  go_function molecular_function|GO:0003674||ND  product PRA1.B1 (PRENYLATED RAB ACCEPTOR 1.B1)  note PRENYLATED RAB ACCEPTOR 1.B1 (PRA1.B1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: PRA1.B2 (PRENYLATED RAB ACCEPTOR 1.B2) (TAIR:AT2G40380.1); Has 388 Blast hits to 388 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 101; Fungi - 73; Plants - 185; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT3G56110.1p  transcript_id AT3G56110.1  protein_id AT3G56110.1p  transcript_id AT3G56110.1  
At3g56120	chr3:020823243	0.0	W/20823243-20823337,20823525-20823622,20823709-20823813,20824236-20824298,20824487-20824560,20824667-20825156,20825269-20825367,20825463-20825606,20825888-20825994,20826135-20826209,20826301-20826357	AT3G56120.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Met-10+ like family protein  note Met-10+ like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function Met10 (InterPro:IPR003402); BEST Arabidopsis thaliana protein match is: Met-10+ like family protein (TAIR:AT4G27340.1); Has 933 Blast hits to 801 proteins in 255 species: Archae - 252; Bacteria - 75; Metazoa - 244; Fungi - 94; Plants - 62; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).  protein_id AT3G56120.1p  transcript_id AT3G56120.1  protein_id AT3G56120.1p  transcript_id AT3G56120.1  
At3g56130	chr3:020826852	0.0	W/20826852-20826885,20827146-20827319,20827623-20827693,20827901-20827954,20828138-20828404,20828504-20828566,20828651-20828719,20828799-20828844,20828940-20829007	AT3G56130.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_function binding|GO:0005488||ISS  product biotin/lipoyl attachment domain-containing protein  note biotin/lipoyl attachment domain-containing protein; FUNCTIONS IN: binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: biotin/lipoyl attachment domain-containing protein (TAIR:AT1G52670.1); Has 1272 Blast hits to 1272 proteins in 462 species: Archae - 11; Bacteria - 891; Metazoa - 0; Fungi - 2; Plants - 68; Viruses - 0; Other Eukaryotes - 300 (source: NCBI BLink).  protein_id AT3G56130.1p  transcript_id AT3G56130.1  protein_id AT3G56130.1p  transcript_id AT3G56130.1  
At3g56130	chr3:020827850	0.0	W/20827850-20827954,20828138-20828404,20828504-20828566,20828651-20828719,20828799-20828844,20828940-20829007	AT3G56130.2  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_function binding|GO:0005488||ISS  product biotin/lipoyl attachment domain-containing protein  note biotin/lipoyl attachment domain-containing protein; FUNCTIONS IN: binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: biotin/lipoyl attachment domain-containing protein (TAIR:AT1G52670.1); Has 1244 Blast hits to 1244 proteins in 456 species: Archae - 11; Bacteria - 870; Metazoa - 0; Fungi - 2; Plants - 68; Viruses - 0; Other Eukaryotes - 293 (source: NCBI BLink).  protein_id AT3G56130.2p  transcript_id AT3G56130.2  protein_id AT3G56130.2p  transcript_id AT3G56130.2  
At3g56130	chr3:020827887	0.0	W/20827887-20827958,20828138-20828404,20828504-20828566,20828651-20828719,20828799-20828844,20828940-20829007	AT3G56130.3  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_function binding|GO:0005488||ISS  product biotin/lipoyl attachment domain-containing protein  note biotin/lipoyl attachment domain-containing protein; FUNCTIONS IN: binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: biotin/lipoyl attachment domain-containing protein (TAIR:AT1G52670.1); Has 1039 Blast hits to 1039 proteins in 369 species: Archae - 11; Bacteria - 701; Metazoa - 0; Fungi - 2; Plants - 65; Viruses - 0; Other Eukaryotes - 260 (source: NCBI BLink).  protein_id AT3G56130.3p  transcript_id AT3G56130.3  protein_id AT3G56130.3p  transcript_id AT3G56130.3  
At3g56140	chr3:020829407	0.0	W/20829407-20830062,20830147-20830276,20830587-20831117,20831304-20831411,20831599-20832147,20832280-20832393,20832520-20832669	AT3G56140.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF399 (InterPro:IPR007314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40400.2); Has 354 Blast hits to 354 proteins in 86 species: Archae - 0; Bacteria - 111; Metazoa - 36; Fungi - 6; Plants - 172; Viruses - 6; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT3G56140.1p  transcript_id AT3G56140.1  protein_id AT3G56140.1p  transcript_id AT3G56140.1  
At3g56150	chr3:020836797	0.0	C/20836797-20836820,20834954-20836708,20833790-20834713	AT3G56150.1  CDS  gene_syn ATEIF3C-1, ATTIF3C1, EIF3C, EIF3C-1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 8, EUKARYOTIC TRANSLATION INITIATION FACTOR 3C, TIF3C1  gene EIF3C  function member of eIF3c - eukaryotic initiation factor 3c  go_process translational initiation|GO:0006413||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_function translation initiation factor activity|GO:0003743||ISS  product EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C); translation initiation factor  note EUKARYOTIC TRANSLATION INITIATION FACTOR 3C (EIF3C); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Proteasome component region PCI (InterPro:IPR000717), Eukaryotic translation initiation factor 3 subunit 8, N-terminal (InterPro:IPR008905); BEST Arabidopsis thaliana protein match is: TIF3C2; translation initiation factor (TAIR:AT3G22860.1); Has 9790 Blast hits to 6300 proteins in 446 species: Archae - 5; Bacteria - 1023; Metazoa - 3575; Fungi - 1028; Plants - 866; Viruses - 85; Other Eukaryotes - 3208 (source: NCBI BLink).  protein_id AT3G56150.1p  transcript_id AT3G56150.1  protein_id AT3G56150.1p  transcript_id AT3G56150.1  
At3g56160	chr3:020841299	0.0	C/20841299-20841541,20841153-20841246,20840796-20840903,20840588-20840655,20840319-20840397,20839889-20839947,20839734-20839802,20839375-20839488,20839034-20839055,20838782-20838849,20838309-20838394,20838067-20838187,20837890-20837991,20837733-20837810	AT3G56160.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process sodium ion transport|GO:0006814||IEA  go_function bile acid:sodium symporter activity|GO:0008508||IEA  product bile acid:sodium symporter  note bile acid:sodium symporter; FUNCTIONS IN: bile acid:sodium symporter activity; INVOLVED IN: sodium ion transport; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bile acid:sodium symporter (InterPro:IPR002657); Has 1967 Blast hits to 1962 proteins in 589 species: Archae - 26; Bacteria - 1122; Metazoa - 92; Fungi - 62; Plants - 76; Viruses - 0; Other Eukaryotes - 589 (source: NCBI BLink).  protein_id AT3G56160.1p  transcript_id AT3G56160.1  protein_id AT3G56160.1p  transcript_id AT3G56160.1  
At3g56170	chr3:020842614	0.0	W/20842614-20842730,20842905-20842960,20843049-20843163,20843263-20843373,20843461-20843648,20843754-20843810,20843898-20844126,20844221-20844319	AT3G56170.1  CDS  gene_syn CA-2+ DEPENDENT NUCLEASE, CAN  gene CAN  function Encodes a calcium-dependent nuclease with similarity to staphylococcal nuclease.  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function nuclease activity|GO:0004518|10760589|IDA  go_function nuclease activity|GO:0004518||ISS  product CAN (CA-2+ DEPENDENT NUCLEASE); nuclease  note CA-2+ DEPENDENT NUCLEASE (CAN); FUNCTIONS IN: nuclease activity; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Staphylococcal nuclease (SNase-like) (InterPro:IPR006021), Staphylococcal nuclease (SNase-like), OB-fold (InterPro:IPR016071), Thermonuclease active site (InterPro:IPR002071); BEST Arabidopsis thaliana protein match is: Ca(2+)-dependent nuclease, putative (TAIR:AT2G40410.2); Has 2111 Blast hits to 2111 proteins in 407 species: Archae - 10; Bacteria - 984; Metazoa - 0; Fungi - 107; Plants - 53; Viruses - 2; Other Eukaryotes - 955 (source: NCBI BLink).  protein_id AT3G56170.1p  transcript_id AT3G56170.1  protein_id AT3G56170.1p  transcript_id AT3G56170.1  
At3g56180	chr3:020844765	0.0	W/20844765-20845019,20845097-20845333,20845426-20845548	AT3G56180.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G10986.1); Has 108 Blast hits to 108 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 106; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G56180.1p  transcript_id AT3G56180.1  protein_id AT3G56180.1p  transcript_id AT3G56180.1  
At3g56190	chr3:020848212	0.0	C/20848212-20848213,20847710-20847759,20847551-20847619,20847376-20847455,20846993-20847144,20846603-20846762,20846458-20846505,20846289-20846369,20846119-20846199	AT3G56190.2  CDS  gene_syn ALPHA-SNAP2, ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2, ASNAP  gene ALPHA-SNAP2  function Encodes one of two alpha-SNAPs (soluble NSF attachment protein) in Arabidopsis  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process intracellular protein transport|GO:0006886||IEA  go_function binding|GO:0005488||IEA  go_function soluble NSF attachment protein activity|GO:0005483||ISS  product ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2); binding / soluble NSF attachment protein  note ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2 (ALPHA-SNAP2); FUNCTIONS IN: soluble NSF attachment protein activity, binding; INVOLVED IN: intracellular protein transport; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: male gametophyte, cultured cell, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: NSF attachment protein (InterPro:IPR000744), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: ALPHA-SNAP1; binding / soluble NSF attachment protein (TAIR:AT3G56450.1); Has 531 Blast hits to 530 proteins in 180 species: Archae - 3; Bacteria - 19; Metazoa - 263; Fungi - 99; Plants - 53; Viruses - 11; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT3G56190.2p  transcript_id AT3G56190.2  protein_id AT3G56190.2p  transcript_id AT3G56190.2  
At3g56190	chr3:020848212	0.0	C/20848212-20848356,20847710-20847759,20847551-20847623,20847376-20847455,20846993-20847144,20846603-20846762,20846458-20846505,20846289-20846369,20846119-20846199	AT3G56190.1  CDS  gene_syn ALPHA-SNAP2, ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2, ASNAP  gene ALPHA-SNAP2  function Encodes one of two alpha-SNAPs (soluble NSF attachment protein) in Arabidopsis  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process intracellular protein transport|GO:0006886||IEA  go_function binding|GO:0005488||IEA  go_function soluble NSF attachment protein activity|GO:0005483||ISS  product ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2); binding / soluble NSF attachment protein  note ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2 (ALPHA-SNAP2); FUNCTIONS IN: soluble NSF attachment protein activity, binding; INVOLVED IN: intracellular protein transport; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: male gametophyte, cultured cell, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: NSF attachment protein (InterPro:IPR000744), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: ALPHA-SNAP1; binding / soluble NSF attachment protein (TAIR:AT3G56450.1); Has 882 Blast hits to 810 proteins in 204 species: Archae - 23; Bacteria - 60; Metazoa - 468; Fungi - 102; Plants - 92; Viruses - 11; Other Eukaryotes - 126 (source: NCBI BLink).  protein_id AT3G56190.1p  transcript_id AT3G56190.1  protein_id AT3G56190.1p  transcript_id AT3G56190.1  
At3g56200	chr3:020850087	0.0	W/20850087-20850450,20850555-20850707,20850796-20850999,20851097-20851562,20851659-20851779	AT3G56200.1  CDS  function Encodes a putative amino acid transporter.  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product amino acid transporter family protein  note amino acid transporter family protein; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid transporter family protein (TAIR:AT2G40420.1); Has 3151 Blast hits to 3119 proteins in 286 species: Archae - 5; Bacteria - 256; Metazoa - 1326; Fungi - 423; Plants - 449; Viruses - 3; Other Eukaryotes - 689 (source: NCBI BLink).  protein_id AT3G56200.1p  transcript_id AT3G56200.1  protein_id AT3G56200.1p  transcript_id AT3G56200.1  
At3g56210	chr3:020855416	0.0	C/20855416-20855445,20855220-20855283,20854731-20854838,20854548-20854646,20854309-20854434,20853995-20854143	AT3G56210.1  CDS  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 32 Blast hits to 32 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G56210.1p  transcript_id AT3G56210.1  protein_id AT3G56210.1p  transcript_id AT3G56210.1  
At3g56210	chr3:020855416	0.0	C/20855416-20855445,20855220-20855283,20854731-20854838,20854548-20854646,20854309-20854434,20853995-20854143	AT3G56210.2  CDS  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 32 Blast hits to 32 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G56210.2p  transcript_id AT3G56210.2  protein_id AT3G56210.2p  transcript_id AT3G56210.2  
At3g56210	chr3:020855416	0.0	C/20855416-20855445,20855220-20855283,20854731-20854838,20854548-20854646,20854309-20854434,20853995-20854143	AT3G56210.4  CDS  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 32 Blast hits to 32 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G56210.4p  transcript_id AT3G56210.4  protein_id AT3G56210.4p  transcript_id AT3G56210.4  
At3g56220	chr3:020858941	0.0	W/20858941-20859021,20859717-20859845,20859927-20860100,20860216-20860302	AT3G56220.1  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription regulator activity|GO:0030528||IEA  product transcription regulator  note transcription regulator; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40435.1); Has 138 Blast hits to 138 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G56220.1p  transcript_id AT3G56220.1  protein_id AT3G56220.1p  transcript_id AT3G56220.1  
At3g56230	chr3:020861926	0.0	C/20861926-20862135,20861611-20861793,20860899-20861354	AT3G56230.1  CDS  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product speckle-type POZ protein-related  note speckle-type POZ protein-related; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: speckle-type POZ protein-related (TAIR:AT1G01640.2); Has 4612 Blast hits to 4516 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 3803; Fungi - 2; Plants - 625; Viruses - 36; Other Eukaryotes - 146 (source: NCBI BLink).  protein_id AT3G56230.1p  transcript_id AT3G56230.1  protein_id AT3G56230.1p  transcript_id AT3G56230.1  
At3g56240	chr3:020864394	0.0	C/20864394-20864402,20863855-20863930,20863460-20863740	AT3G56240.1  CDS  gene_syn CCH, COPPER CHAPERONE, COPPER HOMEOSTASIS FACTOR  gene CCH  function CCH protein belongs to a family of eukaryotic proteins that participate in intracellular copper homeostasis by delivering this metal to the secretory pathway; mainly located along the vascular bundles of senescing leaves and petioles as well as in stem sieve elements; hypothesized to have a role in copper mobilization from decaying organs towards reproductive structures, as a result of metalloprotein breakdown. The plant-specific C-terminal domain of the CCH protein forms amyloid-like fibrils in vitro.  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process response to reactive oxygen species|GO:0000302|9701579|IGI  go_process high-affinity iron ion transport|GO:0006827|9701579|IGI  go_process cellular copper ion homeostasis|GO:0006878|9701579|IMP  go_process cellular copper ion homeostasis|GO:0006878|9701579|TAS  go_process aging|GO:0007568|9701579|IEP  go_function copper chaperone activity|GO:0016531|9701579|ISS  product CCH (COPPER CHAPERONE); copper chaperone  note COPPER CHAPERONE (CCH); FUNCTIONS IN: copper chaperone activity; INVOLVED IN: in 6 processes; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1); metal ion binding (TAIR:AT1G66240.1); Has 1264 Blast hits to 1164 proteins in 239 species: Archae - 8; Bacteria - 230; Metazoa - 149; Fungi - 122; Plants - 698; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT3G56240.1p  transcript_id AT3G56240.1  protein_id AT3G56240.1p  transcript_id AT3G56240.1  
At3g56250	chr3:020866120	0.0	W/20866120-20866441,20866800-20866941,20867221-20867281,20867697-20867840	AT3G56250.1  CDS  product unknown protein  note unknown protein; Has 86 Blast hits to 60 proteins in 30 species: Archae - 0; Bacteria - 6; Metazoa - 14; Fungi - 18; Plants - 10; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT3G56250.1p  transcript_id AT3G56250.1  protein_id AT3G56250.1p  transcript_id AT3G56250.1  
At3g56260	chr3:020868586	0.0	C/20868586-20868773,20868199-20868541	AT3G56260.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 15 Blast hits to 14 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 6; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G56260.1p  transcript_id AT3G56260.1  protein_id AT3G56260.1p  transcript_id AT3G56260.1  
At3g56270	chr3:020870220	0.0	W/20870220-20870420,20870715-20871854	AT3G56270.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40480.1); Has 136 Blast hits to 136 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT3G56270.1p  transcript_id AT3G56270.1  protein_id AT3G56270.1p  transcript_id AT3G56270.1  
At3g56275	chr3:020872831	0.0	W/20872831-20873472	AT3G56275.1  pseudogenic_transcript  pseudo  function pseudogene of unknown protein  note expressed protein  
At3g56277	chr3:020874308	0.0	C/20874308-20874656	AT3G56277.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 4.6e-16 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element)  
At3g56280	chr3:020876567	0.0	W/20876567-20877445	AT3G56280.1  pseudogenic_transcript  pseudo  note pseudogene, protein kinase family, contains protein kinase domain, Pfam:PF00069; blastp match of 44% identity and 9.2e-11 P-value to GP|3947676|emb|CAA21067.1||AL031652 dJ1119D9.1 (PAK5 (KIAA1264) (P21-Rho-binding domain containing serine/threonine protein kinase)) {Homo sapiens}  
At3g56290	chr3:020879254	0.0	C/20879254-20879541,20879022-20879085,20878743-20878912	AT3G56290.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 20 Blast hits to 20 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G56290.1p  transcript_id AT3G56290.1  protein_id AT3G56290.1p  transcript_id AT3G56290.1  
At3g56300	chr3:020880169	0.0	W/20880169-20880350,20880538-20880601,20880703-20880852,20880941-20881111,20881198-20881265,20881303-20881480,20881562-20881676,20881758-20881847,20881915-20882366	AT3G56300.1  CDS  go_component cytoplasm|GO:0005737||IEA  go_process translation|GO:0006412||IEA  go_process cysteinyl-tRNA aminoacylation|GO:0006423||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function cysteine-tRNA ligase activity|GO:0004817||IEA  go_function ATP binding|GO:0005524||IEA  go_process cysteinyl-tRNA aminoacylation|GO:0006423||ISS  go_function cysteine-tRNA ligase activity|GO:0004817||ISS  go_function ATP binding|GO:0005524||ISS  product tRNA synthetase class I (C) family protein  note tRNA synthetase class I (C) family protein; FUNCTIONS IN: cysteine-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: cysteinyl-tRNA aminoacylation, translation; LOCATED IN: cytoplasm; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cysteinyl-tRNA synthetase, class Ia (InterPro:IPR002308), Cysteinyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR015803), Cysteinyl-tRNA synthetase, class Ia, C-terminal (InterPro:IPR015804); BEST Arabidopsis thaliana protein match is: tRNA synthetase class I (C) family protein (TAIR:AT5G38830.1); Has 8133 Blast hits to 7887 proteins in 1621 species: Archae - 141; Bacteria - 3265; Metazoa - 367; Fungi - 179; Plants - 66; Viruses - 3; Other Eukaryotes - 4112 (source: NCBI BLink).  protein_id AT3G56300.1p  transcript_id AT3G56300.1  protein_id AT3G56300.1p  transcript_id AT3G56300.1  
At3g56310	chr3:020882886	0.0	W/20882886-20883112,20883296-20883354,20883473-20883529,20883626-20883660,20883866-20883969,20884060-20884132,20884300-20884358,20884459-20884524,20884627-20884710,20884836-20884900,20884994-20885076,20885148-20885238,20885341-20885399,20885494-20885745	AT3G56310.1  CDS  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process lactose catabolic process|GO:0005990||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function alpha-galactosidase activity|GO:0004557||ISS  product alpha-galactosidase, putative / melibiase, putative / alpha-D-galactoside galactohydrolase, putative  note alpha-galactosidase, putative / melibiase, putative / alpha-D-galactoside galactohydrolase, putative; FUNCTIONS IN: alpha-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process, metabolic process, lactose catabolic process; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Glycoside hydrolase, family 27 (InterPro:IPR002241), Glycoside hydrolase, clan GH-D (InterPro:IPR000111), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: AtAGAL2 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 2); alpha-galactosidase/ catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT5G08370.2); Has 886 Blast hits to 883 proteins in 192 species: Archae - 0; Bacteria - 199; Metazoa - 241; Fungi - 192; Plants - 105; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT3G56310.1p  transcript_id AT3G56310.1  protein_id AT3G56310.1p  transcript_id AT3G56310.1  
At3g56310	chr3:020882886	0.0	W/20882886-20883112,20883296-20883354,20883473-20883529,20883903-20883969,20884060-20884132,20884300-20884358,20884459-20884524,20884627-20884710,20884836-20884900,20884994-20885076,20885148-20885238,20885341-20885399,20885494-20885745	AT3G56310.2  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function alpha-galactosidase activity|GO:0004557||ISS  product alpha-galactosidase, putative / melibiase, putative / alpha-D-galactoside galactohydrolase, putative  note alpha-galactosidase, putative / melibiase, putative / alpha-D-galactoside galactohydrolase, putative; FUNCTIONS IN: alpha-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process, metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Glycoside hydrolase, family 27 (InterPro:IPR002241), Glycoside hydrolase, clan GH-D (InterPro:IPR000111), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: AtAGAL2 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 2); alpha-galactosidase/ catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT5G08370.2); Has 849 Blast hits to 846 proteins in 186 species: Archae - 0; Bacteria - 186; Metazoa - 241; Fungi - 190; Plants - 105; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).  protein_id AT3G56310.2p  transcript_id AT3G56310.2  protein_id AT3G56310.2p  transcript_id AT3G56310.2  
At3g56320	chr3:020888379	0.0	C/20888379-20888624,20888115-20888294,20887933-20888025,20887645-20887827,20887464-20887566,20887182-20887364,20886625-20887106,20886193-20886534	AT3G56320.1  CDS  go_component chloroplast|GO:0009507||IEA  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_process biological_process|GO:0008150||ND  go_function nucleotidyltransferase activity|GO:0016779||ISS  product nucleotidyltransferase family protein  note nucleotidyltransferase family protein; FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Nucleotidyltransferase (InterPro:IPR002934); BEST Arabidopsis thaliana protein match is: nucleotidyltransferase family protein (TAIR:AT2G40520.4); Has 259 Blast hits to 242 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 55; Fungi - 72; Plants - 92; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT3G56320.1p  transcript_id AT3G56320.1  protein_id AT3G56320.1p  transcript_id AT3G56320.1  
At3g56330	chr3:020890250	0.0	W/20890250-20890881,20890990-20891190,20891284-20891584,20891673-20891735,20891829-20891933	AT3G56330.1  CDS  gene_syn T5P19.2  go_process tRNA processing|GO:0008033||IEA  go_function RNA binding|GO:0003723||IEA  go_function tRNA (guanine-N2-)-methyltransferase activity|GO:0004809||IEA  go_process tRNA processing|GO:0008033||ISS  go_function RNA binding|GO:0003723||ISS  go_function tRNA (guanine-N2-)-methyltransferase activity|GO:0004809||ISS  product N2,N2-dimethylguanosine tRNA methyltransferase family protein  note N2,N2-dimethylguanosine tRNA methyltransferase family protein; FUNCTIONS IN: RNA binding, tRNA (guanine-N2-)-methyltransferase activity; INVOLVED IN: tRNA processing; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: N2,N2-dimethylguanosine tRNA methyltransferase (InterPro:IPR002905); BEST Arabidopsis thaliana protein match is: N2,N2-dimethylguanosine tRNA methyltransferase family protein (TAIR:AT5G15810.1); Has 704 Blast hits to 691 proteins in 245 species: Archae - 151; Bacteria - 57; Metazoa - 170; Fungi - 91; Plants - 58; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).  protein_id AT3G56330.1p  transcript_id AT3G56330.1  protein_id AT3G56330.1p  transcript_id AT3G56330.1  
At3g56340	chr3:020893341	0.0	C/20893341-20893343,20893138-20893230,20892964-20893048,20892726-20892859,20892309-20892386	AT3G56340.1  CDS  gene_syn T5P19.4  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S26 (RPS26C)  note 40S ribosomal protein S26 (RPS26C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S26e (InterPro:IPR000892); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S26 (RPS26A) (TAIR:AT2G40510.1); Has 605 Blast hits to 605 proteins in 200 species: Archae - 32; Bacteria - 0; Metazoa - 279; Fungi - 107; Plants - 80; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT3G56340.1p  transcript_id AT3G56340.1  protein_id AT3G56340.1p  transcript_id AT3G56340.1  
At3g56350	chr3:020895316	0.0	C/20895316-20895625,20895164-20895210,20894951-20895076,20894564-20894620,20894384-20894461,20894155-20894262	AT3G56350.1  CDS  gene_syn T5P19.1  go_component endomembrane system|GO:0012505||IEA  go_process superoxide metabolic process|GO:0006801||IEA  go_function superoxide dismutase activity|GO:0004784||IEA  go_function metal ion binding|GO:0046872||IEA  go_component mitochondrion|GO:0005739||ISS  go_process removal of superoxide radicals|GO:0019430||ISS  go_function superoxide dismutase activity|GO:0004784||ISS  product superoxide dismutase (Mn), putative / manganese superoxide dismutase, putative  note superoxide dismutase (Mn), putative / manganese superoxide dismutase, putative; FUNCTIONS IN: superoxide dismutase activity, metal ion binding; INVOLVED IN: superoxide metabolic process, removal of superoxide radicals; LOCATED IN: mitochondrion, endomembrane system; EXPRESSED IN: male gametophyte, seed; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Manganese and iron superoxide dismutase (InterPro:IPR001189); BEST Arabidopsis thaliana protein match is: MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1); metal ion binding / superoxide dismutase (TAIR:AT3G10920.1); Has 7816 Blast hits to 7815 proteins in 2190 species: Archae - 145; Bacteria - 5077; Metazoa - 360; Fungi - 544; Plants - 252; Viruses - 1; Other Eukaryotes - 1437 (source: NCBI BLink).  protein_id AT3G56350.1p  transcript_id AT3G56350.1  protein_id AT3G56350.1p  transcript_id AT3G56350.1  
At3g56360	chr3:020896641	0.0	W/20896641-20897342	AT3G56360.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05250.1); Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G56360.1p  transcript_id AT3G56360.1  protein_id AT3G56360.1p  transcript_id AT3G56360.1  
At3g56370	chr3:020900961	0.0	C/20900961-20902390,20899403-20900867	AT3G56370.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT5G01890.1); Has 151611 Blast hits to 99679 proteins in 3264 species: Archae - 101; Bacteria - 11605; Metazoa - 63918; Fungi - 7104; Plants - 48989; Viruses - 405; Other Eukaryotes - 19489 (source: NCBI BLink).  protein_id AT3G56370.1p  transcript_id AT3G56370.1  protein_id AT3G56370.1p  transcript_id AT3G56370.1  
At3g56380	chr3:020905480	0.0	W/20905480-20905615,20905724-20905803,20905898-20905975,20906097-20906167,20906272-20906368	AT3G56380.1  CDS  gene_syn ARABIDOPSIS RESPONSE REGULATOR 17, ARR17, RESPONSE REGULATOR 17, RR17  gene ARR17  function response regulator 17  go_component cellular_component|GO:0005575||ND  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_function two-component response regulator activity|GO:0000156|11574878|ISS  go_function two-component response regulator activity|GO:0000156|12068096|ISS  go_function two-component response regulator activity|GO:0000156||ISS  go_function transcription regulator activity|GO:0030528|12068096|TAS  product ARR17 (ARABIDOPSIS RESPONSE REGULATOR 17); transcription regulator/ two-component response regulator  note ARABIDOPSIS RESPONSE REGULATOR 17 (ARR17); FUNCTIONS IN: transcription regulator activity, two-component response regulator activity; INVOLVED IN: cytokinin mediated signaling; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver region (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16); transcription regulator/ two-component response regulator (TAIR:AT2G40670.1); Has 24581 Blast hits to 24223 proteins in 1402 species: Archae - 170; Bacteria - 20307; Metazoa - 11; Fungi - 438; Plants - 688; Viruses - 6; Other Eukaryotes - 2961 (source: NCBI BLink).  protein_id AT3G56380.1p  transcript_id AT3G56380.1  protein_id AT3G56380.1p  transcript_id AT3G56380.1  
At3g56390	chr3:020907354	0.0	W/20907354-20907590	AT3G56390.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G56390.1p  transcript_id AT3G56390.1  protein_id AT3G56390.1p  transcript_id AT3G56390.1  
At3g56400	chr3:020910093	0.0	C/20910093-20910409,20909734-20909835,20909082-20909547	AT3G56400.1  CDS  gene_syn ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, ATWRKY70, WRKY DNA-BINDING PROTEIN 70, WRKY70  gene WRKY70  function member of WRKY Transcription Factor; Group III. Function as activator of SA-dependent defense genes and a repressor of JA-regulated genes. WRKY70-controlled suppression of JA-signaling is partly executed by NPR1.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to jasmonic acid stimulus|GO:0009753|16623907|IMP  go_process indole glucosinolate biosynthetic process|GO:0009759|16623907|IMP  go_process systemic acquired resistance, salicylic acid mediated signaling pathway|GO:0009862|16623907|IMP  go_process induced systemic resistance, jasmonic acid mediated signaling pathway|GO:0009864|16623907|IMP  go_process camalexin biosynthetic process|GO:0010120|16623907|IMP  go_process response to chitin|GO:0010200|17722694|IEP  go_process regulation of defense response|GO:0031347|17096590|IMP  go_process defense response to bacterium|GO:0042742|16623907|IMP  go_process defense response to fungus|GO:0050832|16925600|IMP  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|17096590|IMP  go_function transcription factor activity|GO:0003700||ISS  go_function transcription repressor activity|GO:0016564|16623907|IMP  product WRKY70; transcription factor/ transcription repressor  note WRKY70; FUNCTIONS IN: transcription repressor activity, transcription factor activity; INVOLVED IN: in 10 processes; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY54; transcription factor (TAIR:AT2G40750.1); Has 1891 Blast hits to 1623 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1881; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT3G56400.1p  transcript_id AT3G56400.1  protein_id AT3G56400.1p  transcript_id AT3G56400.1  
At3g56408	chr3:020915497	0.0	W/20915497-20921340	AT3G56408.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT3G56410  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G56408.1  
At3g56410	chr3:020920733	0.0	C/20920733-20920877,20916320-20920641	AT3G56410.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05190.1); Has 4453 Blast hits to 3149 proteins in 370 species: Archae - 15; Bacteria - 402; Metazoa - 1490; Fungi - 323; Plants - 240; Viruses - 54; Other Eukaryotes - 1929 (source: NCBI BLink).  protein_id AT3G56410.1p  transcript_id AT3G56410.1  protein_id AT3G56410.1p  transcript_id AT3G56410.1  
At3g56410	chr3:020921021	0.0	C/20921021-20921134,20920733-20920904,20916320-20920641	AT3G56410.2  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05190.1); Has 4436 Blast hits to 3147 proteins in 369 species: Archae - 15; Bacteria - 401; Metazoa - 1486; Fungi - 320; Plants - 239; Viruses - 48; Other Eukaryotes - 1927 (source: NCBI BLink).  protein_id AT3G56410.2p  transcript_id AT3G56410.2  protein_id AT3G56410.2p  transcript_id AT3G56410.2  
At3g56420	chr3:020922852	0.0	C/20922852-20922890,20922600-20922752,20922383-20922505,20922140-20922289	AT3G56420.1  CDS  go_process cell redox homeostasis|GO:0045454||IEA  go_component cellular_component|GO:0005575||ND  product unknown protein  note INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATCXXS2 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1); protein disulfide isomerase (TAIR:AT2G40790.1); Has 6839 Blast hits to 6830 proteins in 1457 species: Archae - 125; Bacteria - 3259; Metazoa - 916; Fungi - 420; Plants - 647; Viruses - 6; Other Eukaryotes - 1466 (source: NCBI BLink).  protein_id AT3G56420.1p  transcript_id AT3G56420.1  protein_id AT3G56420.1p  transcript_id AT3G56420.1  
At3g56430	chr3:020925001	0.0	C/20925001-20925696,20924446-20924718,20923653-20923988	AT3G56430.1  CDS  go_component vacuole|GO:0005773|14760709|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial import inner membrane translocase, subunit Tim21 (InterPro:IPR013261); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40800.1); Has 4137 Blast hits to 1696 proteins in 174 species: Archae - 12; Bacteria - 151; Metazoa - 1948; Fungi - 384; Plants - 114; Viruses - 61; Other Eukaryotes - 1467 (source: NCBI BLink).  protein_id AT3G56430.1p  transcript_id AT3G56430.1  protein_id AT3G56430.1p  transcript_id AT3G56430.1  
At3g56440	chr3:020926874	0.0	W/20926874-20927602,20927850-20928081,20928458-20928581,20928707-20928797	AT3G56440.1  CDS  gene_syn AtATG18d  gene AtATG18d  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product AtATG18d  note AtATG18d; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: AtATG18c (TAIR:AT2G40810.2); Has 1093 Blast hits to 1046 proteins in 176 species: Archae - 0; Bacteria - 24; Metazoa - 508; Fungi - 305; Plants - 110; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).  protein_id AT3G56440.1p  transcript_id AT3G56440.1  protein_id AT3G56440.1p  transcript_id AT3G56440.1  
At3g56450	chr3:020930557	0.0	W/20930557-20930965,20931260-20931360,20931811-20931962,20932202-20932352,20932450-20932497,20932585-20932869	AT3G56450.1  CDS  gene_syn ALPHA-SNAP1  gene ALPHA-SNAP1  function member of alpha-SNAP Gene Family  go_component plasma membrane|GO:0005886|17644812|IDA  go_process intracellular protein transport|GO:0006886||IEA  go_function binding|GO:0005488||IEA  go_function soluble NSF attachment protein activity|GO:0005483||ISS  product ALPHA-SNAP1; binding / soluble NSF attachment protein  note ALPHA-SNAP1; FUNCTIONS IN: soluble NSF attachment protein activity, binding; INVOLVED IN: intracellular protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: NSF attachment protein (InterPro:IPR000744), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2); binding / soluble NSF attachment protein (TAIR:AT3G56190.1); Has 468 Blast hits to 468 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 233; Fungi - 99; Plants - 50; Viruses - 11; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT3G56450.1p  transcript_id AT3G56450.1  protein_id AT3G56450.1p  transcript_id AT3G56450.1  
At3g56460	chr3:020933970	0.0	C/20933970-20934425,20933778-20933869,20933437-20933695,20933199-20933342,20933029-20933124	AT3G56460.1  CDS  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function zinc ion binding|GO:0008270||ISS  product oxidoreductase, zinc-binding dehydrogenase family protein  note oxidoreductase, zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, binding, zinc ion binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Quinone oxidoreductase/zeta-crystallin, conserved site (InterPro:IPR002364), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: oxidoreductase, zinc-binding dehydrogenase family protein (TAIR:AT4G21580.1); Has 27533 Blast hits to 27426 proteins in 1649 species: Archae - 279; Bacteria - 14496; Metazoa - 1760; Fungi - 2501; Plants - 878; Viruses - 3; Other Eukaryotes - 7616 (source: NCBI BLink).  protein_id AT3G56460.1p  transcript_id AT3G56460.1  protein_id AT3G56460.1p  transcript_id AT3G56460.1  
At3g56470	chr3:020934815	0.0	W/20934815-20934831,20934931-20936017	AT3G56470.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G57790.1); Has 270 Blast hits to 265 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 270; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G56470.1p  transcript_id AT3G56470.1  protein_id AT3G56470.1p  transcript_id AT3G56470.1  
At3g56480	chr3:020938705	0.0	C/20938705-20938986,20938492-20938620,20938291-20938383,20938025-20938171,20937881-20937949,20937714-20937797,20937439-20937622,20937235-20937351,20937097-20937155,20936873-20937004,20936623-20936772,20936480-20936506	AT3G56480.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product myosin heavy chain-related  note myosin heavy chain-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40820.1); Has 375 Blast hits to 348 proteins in 90 species: Archae - 0; Bacteria - 43; Metazoa - 126; Fungi - 17; Plants - 68; Viruses - 1; Other Eukaryotes - 120 (source: NCBI BLink).  protein_id AT3G56480.1p  transcript_id AT3G56480.1  protein_id AT3G56480.1p  transcript_id AT3G56480.1  
At3g56490	chr3:020941532	0.0	W/20941532-20941641,20942202-20942259,20942615-20942704,20942830-20942947,20943062-20943129	AT3G56490.1  CDS  go_component plasma membrane|GO:0005886|17644812|IDA  go_function catalytic activity|GO:0003824||IEA  go_process biological_process|GO:0008150||ND  go_function protein kinase C binding|GO:0005080||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc-binding protein, putative / protein kinase C inhibitor, putative  note zinc-binding protein, putative / protein kinase C inhibitor, putative; FUNCTIONS IN: protein kinase C binding, zinc ion binding, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histidine triad-like motif (InterPro:IPR011146), Histidine triad (HIT) protein (InterPro:IPR001310), Histidine triad motif (InterPro:IPR011151); BEST Arabidopsis thaliana protein match is: zinc-binding protein, putative / protein kinase C inhibitor, putative (TAIR:AT1G31160.1); Has 5450 Blast hits to 5449 proteins in 1437 species: Archae - 95; Bacteria - 2606; Metazoa - 283; Fungi - 87; Plants - 62; Viruses - 0; Other Eukaryotes - 2317 (source: NCBI BLink).  protein_id AT3G56490.1p  transcript_id AT3G56490.1  protein_id AT3G56490.1p  transcript_id AT3G56490.1  
At3g56500	chr3:020943638	0.0	W/20943638-20943970	AT3G56500.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product serine-rich protein-related  note serine-rich protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: stem; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 86 Blast hits to 84 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G56500.1p  transcript_id AT3G56500.1  protein_id AT3G56500.1p  transcript_id AT3G56500.1  
At3g56510	chr3:020945983	0.0	C/20945983-20946235,20945806-20945869,20945595-20945662,20945413-20945502,20945193-20945323,20944796-20944945,20944348-20944365	AT3G56510.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function TATA-binding protein binding|GO:0017025||ISS  product TBP-binding protein, putative  note TBP-binding protein, putative; FUNCTIONS IN: TATA-binding protein binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504); Has 399 Blast hits to 393 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 177; Fungi - 131; Plants - 26; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT3G56510.1p  transcript_id AT3G56510.1  protein_id AT3G56510.1p  transcript_id AT3G56510.1  
At3g56510	chr3:020945983	0.0	C/20945983-20946235,20945806-20945869,20945595-20945662,20945413-20945502,20945193-20945323,20944796-20944945,20944348-20944365	AT3G56510.2  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function TATA-binding protein binding|GO:0017025||ISS  product TBP-binding protein, putative  note TBP-binding protein, putative; FUNCTIONS IN: TATA-binding protein binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504); Has 399 Blast hits to 393 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 177; Fungi - 131; Plants - 26; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT3G56510.2p  transcript_id AT3G56510.2  protein_id AT3G56510.2p  transcript_id AT3G56510.2  
At3g56520	chr3:020947563	0.0	C/20947563-20947731,20947107-20947465	AT3G56520.1  CDS  go_process regulation of transcription|GO:0045449||IEA  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product no apical meristem (NAM) family protein  note no apical meristem (NAM) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac095 (Arabidopsis NAC domain containing protein 95); transcription factor (TAIR:AT5G41090.1); Has 922 Blast hits to 920 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 922; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G56520.1p  transcript_id AT3G56520.1  protein_id AT3G56520.1p  transcript_id AT3G56520.1  
At3g56530	chr3:020949745	0.0	C/20949745-20950045,20949390-20949658,20948911-20949300	AT3G56530.1  CDS  gene_syn Arabidopsis NAC domain containing protein 64, anac064  gene anac064  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac064 (Arabidopsis NAC domain containing protein 64); transcription factor  note Arabidopsis NAC domain containing protein 64 (anac064); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC093 (Arabidopsis NAC domain containing protein 93); transcription factor (TAIR:AT5G39690.1); Has 1367 Blast hits to 1362 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1367; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G56530.1p  transcript_id AT3G56530.1  protein_id AT3G56530.1p  transcript_id AT3G56530.1  
At3g56540	chr3:020950823	0.0	W/20950823-20951213,20951370-20951474,20951594-20951892	AT3G56540.1  CDS  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product serine carboxypeptidase, putative  note serine carboxypeptidase, putative; FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl39 (serine carboxypeptidase-like 39); serine-type carboxypeptidase (TAIR:AT3G52020.1); Has 2454 Blast hits to 2419 proteins in 297 species: Archae - 0; Bacteria - 186; Metazoa - 560; Fungi - 555; Plants - 821; Viruses - 0; Other Eukaryotes - 332 (source: NCBI BLink).  protein_id AT3G56540.1p  transcript_id AT3G56540.1  protein_id AT3G56540.1p  transcript_id AT3G56540.1  
At3g56550	chr3:020952896	0.0	C/20952896-20954641	AT3G56550.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21065.1); Has 11077 Blast hits to 4653 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 33; Fungi - 19; Plants - 10895; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink).  protein_id AT3G56550.1p  transcript_id AT3G56550.1  protein_id AT3G56550.1p  transcript_id AT3G56550.1  
At3g56560	chr3:020955404	0.0	W/20955404-20955592,20956165-20956465,20956671-20956867	AT3G56560.1  CDS  gene_syn Arabidopsis NAC domain containing protein 65, anac065  gene anac065  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac065 (Arabidopsis NAC domain containing protein 65); transcription factor  note Arabidopsis NAC domain containing protein 65 (anac065); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac063 (Arabidopsis NAC domain containing protein 63); transcription factor (TAIR:AT3G55210.1); Has 933 Blast hits to 933 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 933; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G56560.1p  transcript_id AT3G56560.1  protein_id AT3G56560.1p  transcript_id AT3G56560.1  
At3g56570	chr3:020958660	0.0	W/20958660-20958670,20958751-20959123,20959202-20959398,20960047-20960380,20960457-20961137	AT3G56570.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SET domain-containing protein  note SET domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RuBisCO-cytochrome methylase, RMS1 (InterPro:IPR011383), SET (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putative (TAIR:AT1G14030.1); Has 27821 Blast hits to 11986 proteins in 532 species: Archae - 37; Bacteria - 1179; Metazoa - 14295; Fungi - 2535; Plants - 1065; Viruses - 772; Other Eukaryotes - 7938 (source: NCBI BLink).  protein_id AT3G56570.1p  transcript_id AT3G56570.1  protein_id AT3G56570.1p  transcript_id AT3G56570.1  
At3g56580	chr3:020962563	0.0	W/20962563-20963525	AT3G56580.1  CDS  gene_syn T5P19.5  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: RHC1A; protein binding / zinc ion binding (TAIR:AT2G40830.3); Has 7019 Blast hits to 6954 proteins in 216 species: Archae - 0; Bacteria - 6; Metazoa - 2420; Fungi - 600; Plants - 2628; Viruses - 11; Other Eukaryotes - 1354 (source: NCBI BLink).  protein_id AT3G56580.1p  transcript_id AT3G56580.1  protein_id AT3G56580.1p  transcript_id AT3G56580.1  
At3g56580	chr3:020962563	0.0	W/20962563-20963525	AT3G56580.2  CDS  gene_syn T5P19.5  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: RHC1A; protein binding / zinc ion binding (TAIR:AT2G40830.3); Has 7019 Blast hits to 6954 proteins in 216 species: Archae - 0; Bacteria - 6; Metazoa - 2420; Fungi - 600; Plants - 2628; Viruses - 11; Other Eukaryotes - 1354 (source: NCBI BLink).  protein_id AT3G56580.2p  transcript_id AT3G56580.2  protein_id AT3G56580.2p  transcript_id AT3G56580.2  
At3g56580	chr3:020962563	0.0	W/20962563-20963525	AT3G56580.3  CDS  gene_syn T5P19.5  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: RHC1A; protein binding / zinc ion binding (TAIR:AT2G40830.3); Has 7019 Blast hits to 6954 proteins in 216 species: Archae - 0; Bacteria - 6; Metazoa - 2420; Fungi - 600; Plants - 2628; Viruses - 11; Other Eukaryotes - 1354 (source: NCBI BLink).  protein_id AT3G56580.3p  transcript_id AT3G56580.3  protein_id AT3G56580.3p  transcript_id AT3G56580.3  
At3g56590	chr3:020965105	0.0	W/20965105-20965351,20966324-20966436,20966525-20966896,20966974-20967625,20967699-20967784	AT3G56590.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G10810.1); Has 14277 Blast hits to 9531 proteins in 665 species: Archae - 26; Bacteria - 1625; Metazoa - 4928; Fungi - 2262; Plants - 3165; Viruses - 515; Other Eukaryotes - 1756 (source: NCBI BLink).  protein_id AT3G56590.2p  transcript_id AT3G56590.2  protein_id AT3G56590.2p  transcript_id AT3G56590.2  
At3g56590	chr3:020965105	0.0	W/20965105-20965351,20966324-20966436,20966525-20966896,20966974-20967675	AT3G56590.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G10810.1); Has 22948 Blast hits to 13764 proteins in 833 species: Archae - 42; Bacteria - 2594; Metazoa - 8521; Fungi - 3551; Plants - 4342; Viruses - 788; Other Eukaryotes - 3110 (source: NCBI BLink).  protein_id AT3G56590.1p  transcript_id AT3G56590.1  protein_id AT3G56590.1p  transcript_id AT3G56590.1  
At3g56600	chr3:020969087	0.0	W/20969087-20970697	AT3G56600.1  CDS  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_process biological_process|GO:0008150||ND  go_function inositol or phosphatidylinositol kinase activity|GO:0004428||ISS  product inositol or phosphatidylinositol kinase/ phosphotransferase, alcohol group as acceptor  note inositol or phosphatidylinositol kinase/ phosphotransferase, alcohol group as acceptor; FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor; INVOLVED IN: biological_process unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3- and 4-kinase, catalytic (InterPro:IPR000403); BEST Arabidopsis thaliana protein match is: phosphatidylinositol 3- and 4-kinase family protein (TAIR:AT2G40850.1); Has 351 Blast hits to 346 proteins in 104 species: Archae - 0; Bacteria - 2; Metazoa - 110; Fungi - 42; Plants - 129; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT3G56600.1p  transcript_id AT3G56600.1  protein_id AT3G56600.1p  transcript_id AT3G56600.1  
At3g56610	chr3:020971686	0.0	C/20971686-20972072	AT3G56610.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, embryo, sepal, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G56610.1p  transcript_id AT3G56610.1  protein_id AT3G56610.1p  transcript_id AT3G56610.1  
At3g56620	chr3:020974308	0.0	C/20974308-20974495,20974156-20974218,20973956-20974072,20973599-20973827,20973264-20973422,20973022-20973173,20972696-20972921	AT3G56620.1  CDS  go_component membrane|GO:0016020||IEA  product integral membrane family protein / nodulin MtN21-related  note integral membrane family protein / nodulin MtN21-related; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT2G40900.1); Has 2295 Blast hits to 2284 proteins in 442 species: Archae - 13; Bacteria - 1085; Metazoa - 6; Fungi - 0; Plants - 640; Viruses - 0; Other Eukaryotes - 551 (source: NCBI BLink).  protein_id AT3G56620.1p  transcript_id AT3G56620.1  protein_id AT3G56620.1p  transcript_id AT3G56620.1  
At3g56630	chr3:020978953	0.0	W/20978953-20979410,20979471-20980512	AT3G56630.1  CDS  gene_syn CYP94D2, CYTOCHROME P450, FAMILY 94, SUBFAMILY D, POLYPEPTIDE 2  gene CYP94D2  function member of CYP94D  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process biological_process|GO:0008150||ND  go_function oxygen binding|GO:0019825||ISS  product CYP94D2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP94D2; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP94D1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G34540.1); Has 20704 Blast hits to 20653 proteins in 1088 species: Archae - 19; Bacteria - 1543; Metazoa - 9512; Fungi - 3964; Plants - 4898; Viruses - 3; Other Eukaryotes - 765 (source: NCBI BLink).  protein_id AT3G56630.1p  transcript_id AT3G56630.1  protein_id AT3G56630.1p  transcript_id AT3G56630.1  
At3g56640	chr3:020981967	0.0	W/20981967-20984336	AT3G56640.1  CDS  go_component exocyst|GO:0000145|18492870|IDA  go_process pollen germination|GO:0009846|18492870|IMP  go_process pollen tube growth|GO:0009860|18492870|IMP  product exocyst complex subunit Sec15-like family protein  note exocyst complex subunit Sec15-like family protein; INVOLVED IN: pollen germination, pollen tube growth; LOCATED IN: exocyst; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Exocyst complex subunit Sec15-like (InterPro:IPR007225); BEST Arabidopsis thaliana protein match is: exocyst complex subunit Sec15-like family protein (TAIR:AT4G02350.1); Has 315 Blast hits to 311 proteins in 129 species: Archae - 3; Bacteria - 0; Metazoa - 150; Fungi - 86; Plants - 46; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT3G56640.1p  transcript_id AT3G56640.1  protein_id AT3G56640.1p  transcript_id AT3G56640.1  
At3g56650	chr3:020984807	0.0	W/20984807-20985107,20985318-20985634,20985743-20985913	AT3G56650.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  product thylakoid lumenal 20 kDa protein  note thylakoid lumenal 20 kDa protein; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast stroma, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); BEST Arabidopsis thaliana protein match is: thylakoid lumenal 29.8 kDa protein (TAIR:AT1G77090.1); Has 70 Blast hits to 70 proteins in 23 species: Archae - 0; Bacteria - 20; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G56650.1p  transcript_id AT3G56650.1  protein_id AT3G56650.1p  transcript_id AT3G56650.1  
At3g56660	chr3:020986776	0.0	C/20986776-20988213,20986217-20986641	AT3G56660.1  CDS  gene_syn BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49, BZIP49  gene BZIP49  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  product BZIP49 (BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49); DNA binding / transcription factor  note BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49 (BZIP49); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: BZIP17; DNA binding / transcription activator/ transcription factor (TAIR:AT2G40950.1); Has 682 Blast hits to 682 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 320; Fungi - 103; Plants - 177; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT3G56660.1p  transcript_id AT3G56660.1  protein_id AT3G56660.1p  transcript_id AT3G56660.1  
At3g56670	chr3:020989591	0.0	C/20989591-20989995,20989035-20989331	AT3G56670.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G50220.1); Has 29 Blast hits to 23 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G56670.1p  transcript_id AT3G56670.1  protein_id AT3G56670.1p  transcript_id AT3G56670.1  
At3g56680	chr3:020991537	0.0	W/20991537-20991657,20992157-20992784,20992884-20993145,20993396-20993446	AT3G56680.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Single-stranded nucleic acid binding R3H (InterPro:IPR001374); BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT2G40960.1); Has 298 Blast hits to 298 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 166; Fungi - 36; Plants - 94; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G56680.1p  transcript_id AT3G56680.1  protein_id AT3G56680.1p  transcript_id AT3G56680.1  
At3g56690	chr3:020998235	0.0	C/20998235-20998531,20997996-20998142,20997112-20997902,20996520-20996724,20996177-20996384,20995593-20996083,20994713-20995139,20994544-20994624,20994265-20994455,20994007-20994185,20993869-20993920	AT3G56690.1  CDS  gene_syn CAM INTERACTING PROTEIN 111, CIP111  gene CIP111  function encodes a protein similar to ATPases and binds to calmodulin in vitro. This is a single-copy gene and is expressed in all tissues examined.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_function calmodulin binding|GO:0005516|11346951|IDA  go_function calmodulin binding|GO:0005516|11782485|TAS  go_function ATPase activity|GO:0016887|11346951|ISS  go_function ATPase activity|GO:0016887||ISS  product CIP111 (CAM INTERACTING PROTEIN 111); ATPase/ calmodulin binding  note CAM INTERACTING PROTEIN 111 (CIP111); FUNCTIONS IN: calmodulin binding, ATPase activity; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: cell division cycle protein 48, putative / CDC48, putative (TAIR:AT5G03340.1); Has 43336 Blast hits to 22235 proteins in 1827 species: Archae - 1450; Bacteria - 13685; Metazoa - 7792; Fungi - 4478; Plants - 3139; Viruses - 48; Other Eukaryotes - 12744 (source: NCBI BLink).  protein_id AT3G56690.1p  transcript_id AT3G56690.1  protein_id AT3G56690.1p  transcript_id AT3G56690.1  
At3g56700	chr3:021001767	0.0	C/21001767-21002058,21001584-21001687,21001296-21001495,21001159-21001196,21000830-21001001,21000519-21000680,20999974-21000426,20999731-20999893	AT3G56700.1  CDS  gene_syn FAR6, FATTY ACID REDUCTASE 6  gene FAR6  go_component chloroplast|GO:0009507||IEA  go_process metabolic process|GO:0008152||IEA  go_process microsporogenesis|GO:0009556||ISS  go_function oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor|GO:0016628||ISS  go_function fatty acyl-CoA reductase (alcohol-forming) activity|GO:0080019|19062129|IDA  product FAR6 (FATTY ACID REDUCTASE 6); fatty acyl-CoA reductase (alcohol-forming)/ oxidoreductase, acting on the CH-CH group of donors, NAD or NADP as acceptor  note FATTY ACID REDUCTASE 6 (FAR6); FUNCTIONS IN: fatty acyl-CoA reductase (alcohol-forming) activity, oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor; INVOLVED IN: microsporogenesis, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: inflorescence meristem, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Male sterility (InterPro:IPR004262), NAD(P)-binding (InterPro:IPR016040), Male sterility, NAD-binding (InterPro:IPR013120); BEST Arabidopsis thaliana protein match is: MS2 (MALE STERILITY 2); fatty acyl-CoA reductase (alcohol-forming)/ oxidoreductase, acting on the CH-CH group of donors, NAD or NADP as acceptor (TAIR:AT3G11980.1); Has 1606 Blast hits to 1587 proteins in 283 species: Archae - 0; Bacteria - 339; Metazoa - 853; Fungi - 139; Plants - 136; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).  protein_id AT3G56700.1p  transcript_id AT3G56700.1  protein_id AT3G56700.1p  transcript_id AT3G56700.1  
At3g56705	chr3:021004259	0.0	W/21004259-21004809	AT3G56705.1  snRNA  gene_syn 68067.SNRNA00001, U2 SMALL NUCLEOLAR RNA 6, U2.6  gene U2.6  go_component snRNP U2|GO:0005686||TAS  go_process nuclear mRNA cis splicing, via spliceosome|GO:0045292||TAS  go_function RNA splicing factor activity, transesterification mechanism|GO:0031202||TAS  product U2.6 (U2 SMALL NUCLEOLAR RNA 6); snRNA  note gi|17665|emb|X52312.1|ATU26 Arabidopsis thaliana U2.6 snRNA gene for U2 snRNA  transcript_id AT3G56705.1  
At3g56710	chr3:021007053	0.0	C/21007053-21007508	AT3G56710.1  CDS  gene_syn SIB1, SIGMA FACTOR BINDING PROTEIN 1  gene SIB1  function Sig1 binding protein; interacts with Sig1R4. As well as Sig1, SibI is imported into chloroplasts and its expression is light-dependent in mature chloroplasts.  go_component chloroplast|GO:0009507|11943170|IEP  go_process biological_process|GO:0008150||ND  go_function binding|GO:0005488||ISS  go_function protein binding|GO:0005515|11943170|IPI  product SIB1 (SIGMA FACTOR BINDING PROTEIN 1); binding / protein binding  note SIGMA FACTOR BINDING PROTEIN 1 (SIB1); FUNCTIONS IN: protein binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: sigA-binding protein-related (TAIR:AT2G41180.1); Has 21 Blast hits to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G56710.1p  transcript_id AT3G56710.1  protein_id AT3G56710.1p  transcript_id AT3G56710.1  
At3g56720	chr3:021011354	0.0	W/21011354-21011492,21011671-21012294,21012378-21012461,21012665-21012756,21012846-21012920,21013118-21013264	AT3G56720.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 5618 Blast hits to 4117 proteins in 284 species: Archae - 6; Bacteria - 147; Metazoa - 3194; Fungi - 606; Plants - 492; Viruses - 13; Other Eukaryotes - 1160 (source: NCBI BLink).  protein_id AT3G56720.1p  transcript_id AT3G56720.1  protein_id AT3G56720.1p  transcript_id AT3G56720.1  
At3g56730	chr3:021014208	0.0	W/21014208-21014235,21014350-21014547,21014636-21014910	AT3G56730.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62050.1); Has 57 Blast hits to 57 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G56730.1p  transcript_id AT3G56730.1  protein_id AT3G56730.1p  transcript_id AT3G56730.1  
At3g56740	chr3:021015631	0.0	W/21015631-21015655,21015750-21015850,21016284-21016424,21016623-21016689,21017058-21017209,21017304-21017405,21017502-21017627,21017716-21017883	AT3G56740.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ubiquitin-associated (UBA)/TS-N domain-containing protein  note ubiquitin-associated (UBA)/TS-N domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: ubiquitin-associated (UBA)/TS-N domain-containing protein (TAIR:AT2G41160.1); Has 203 Blast hits to 203 proteins in 70 species: Archae - 0; Bacteria - 2; Metazoa - 60; Fungi - 65; Plants - 60; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT3G56740.1p  transcript_id AT3G56740.1  protein_id AT3G56740.1p  transcript_id AT3G56740.1  
At3g56750	chr3:021019867	0.0	C/21019867-21020192,21019669-21019761,21019345-21019575,21019091-21019193,21018693-21018922,21018326-21018554	AT3G56750.1  CDS  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41150.2); Has 71 Blast hits to 71 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT3G56750.1p  transcript_id AT3G56750.1  protein_id AT3G56750.1p  transcript_id AT3G56750.1  
At3g56760	chr3:021023271	0.0	C/21023271-21023756,21022597-21022727,21022442-21022483,21022247-21022355,21022073-21022151,21021695-21021991,21021480-21021592,21021289-21021396,21021146-21021208,21020890-21021057,21020661-21020798	AT3G56760.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function calcium-dependent protein serine/threonine phosphatase activity|GO:0004723||ISS  go_function calcium ion binding|GO:0005509||ISS  go_function kinase activity|GO:0016301||ISS  product calcium-dependent protein kinase, putative / CDPK, putative  note calcium-dependent protein kinase, putative / CDPK, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CRK1 (CDPK-RELATED KINASE 1); calcium ion binding / calcium-dependent protein serine/threonine phosphatase/ calmodulin-dependent protein kinase/ kinase (TAIR:AT2G41140.1); Has 85854 Blast hits to 84543 proteins in 1944 species: Archae - 69; Bacteria - 8182; Metazoa - 37138; Fungi - 8441; Plants - 14051; Viruses - 447; Other Eukaryotes - 17526 (source: NCBI BLink).  protein_id AT3G56760.1p  transcript_id AT3G56760.1  protein_id AT3G56760.1p  transcript_id AT3G56760.1  
At3g56770	chr3:021030391	0.0	C/21030391-21030618,21029202-21029666	AT3G56770.1  CDS  go_component nucleus|GO:0005634||IEA  go_process response to chitin|GO:0010200|17722694|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to chitin, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT2G41130.1); Has 306 Blast hits to 305 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 6; Plants - 295; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G56770.1p  transcript_id AT3G56770.1  protein_id AT3G56770.1p  transcript_id AT3G56770.1  
At3g56770	chr3:021030413	0.0	C/21030413-21030618,21030217-21030325	AT3G56770.2  CDS  go_process response to chitin|GO:0010200|17722694|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to chitin, regulation of transcription; BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT2G41130.1).  protein_id AT3G56770.2p  transcript_id AT3G56770.2  protein_id AT3G56770.2p  transcript_id AT3G56770.2  
At3g56780	chr3:021031613	0.0	W/21031613-21032635,21032735-21032857,21032974-21033096,21033176-21033202	AT3G56780.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G56420.2); Has 1119 Blast hits to 1024 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 43; Fungi - 0; Plants - 1074; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G56780.1p  transcript_id AT3G56780.1  protein_id AT3G56780.1p  transcript_id AT3G56780.1  
At3g56790	chr3:021033835	0.0	C/21033835-21034455	AT3G56790.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product RNA splicing factor-related  note RNA splicing factor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pre-mRNA-splicing factor 3 (InterPro:IPR013881); BEST Arabidopsis thaliana protein match is: RNA splicing factor-related (TAIR:AT3G55930.1); Has 255 Blast hits to 238 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 73; Plants - 39; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT3G56790.1p  transcript_id AT3G56790.1  protein_id AT3G56790.1p  transcript_id AT3G56790.1  
At3g56800	chr3:021035845	0.0	C/21035845-21035920,21034981-21035354	AT3G56800.1  CDS  gene_syn CALMODULIN 3, CAM3, T8M16.130, acam-3  gene CAM3  function encodes a calmodulin  go_component vacuole|GO:0005773|15539469|IDA  go_process calcium-mediated signaling|GO:0019722|1627778|TAS  go_function calcium ion binding|GO:0005509|1627778|ISS  go_function calcium ion binding|GO:0005509||ISS  product CAM3 (CALMODULIN 3); calcium ion binding  note CALMODULIN 3 (CAM3); FUNCTIONS IN: calcium ion binding; INVOLVED IN: calcium-mediated signaling; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: CAM2 (CALMODULIN 2); calcium ion binding / protein binding (TAIR:AT2G41110.1); Has 26617 Blast hits to 18191 proteins in 1446 species: Archae - 0; Bacteria - 129; Metazoa - 12467; Fungi - 5648; Plants - 4226; Viruses - 0; Other Eukaryotes - 4147 (source: NCBI BLink).  protein_id AT3G56800.1p  transcript_id AT3G56800.1  protein_id AT3G56800.1p  transcript_id AT3G56800.1  
At3g56810	chr3:021038480	0.0	C/21038480-21038927,21036927-21037477	AT3G56810.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 4 Blast hits to 4 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G56810.1p  transcript_id AT3G56810.1  protein_id AT3G56810.1p  transcript_id AT3G56810.1  
At3g56820	chr3:021041375	0.0	C/21041375-21041711,21040936-21041060,21040061-21040261	AT3G56820.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 21 Blast hits to 21 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT3G56820.1p  transcript_id AT3G56820.1  protein_id AT3G56820.1p  transcript_id AT3G56820.1  
At3g56825	chr3:021041727	0.0	C/21041727-21042609	AT3G56825.1  snRNA  gene_syn 68067.SNRNA00002, U2 SMALL NUCLEOLAR RNA 4, U2.4  gene U2.4  go_component snRNP U2|GO:0005686||TAS  go_process nuclear mRNA cis splicing, via spliceosome|GO:0045292||TAS  go_function RNA splicing factor activity, transesterification mechanism|GO:0031202||TAS  product U2.4 (U2 SMALL NUCLEOLAR RNA 4); snRNA  note gi|17663|emb|X06475.1|ATU24 Arabidopsis thaliana U2 RNA gene (U2.4)  transcript_id AT3G56825.1  
At3g56830	chr3:021043689	0.0	C/21043689-21043840,21042755-21043295	AT3G56830.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF565 (InterPro:IPR007572); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65420.1); Has 104 Blast hits to 104 proteins in 30 species: Archae - 0; Bacteria - 21; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT3G56830.1p  transcript_id AT3G56830.1  protein_id AT3G56830.1p  transcript_id AT3G56830.1  
At3g56830	chr3:021043689	0.0	C/21043689-21043840,21042888-21043295,21042781-21042787	AT3G56830.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF565 (InterPro:IPR007572); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65420.1); Has 104 Blast hits to 104 proteins in 30 species: Archae - 0; Bacteria - 21; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT3G56830.2p  transcript_id AT3G56830.2  protein_id AT3G56830.2p  transcript_id AT3G56830.2  
At3g56830	chr3:021043689	0.0	C/21043689-21043840,21042888-21043295,21042781-21042787	AT3G56830.3  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF565 (InterPro:IPR007572); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65420.1); Has 104 Blast hits to 104 proteins in 30 species: Archae - 0; Bacteria - 21; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT3G56830.3p  transcript_id AT3G56830.3  protein_id AT3G56830.3p  transcript_id AT3G56830.3  
At3g56840	chr3:021044317	0.0	W/21044317-21044400,21044465-21044794,21044875-21045156,21045217-21045698,21045784-21045943,21046064-21046177	AT3G56840.1  CDS  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function oxidoreductase activity|GO:0016491||ISS  product FAD-dependent oxidoreductase family protein  note FAD-dependent oxidoreductase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD dependent oxidoreductase (InterPro:IPR006076); Has 3103 Blast hits to 3101 proteins in 818 species: Archae - 54; Bacteria - 1711; Metazoa - 92; Fungi - 84; Plants - 22; Viruses - 1; Other Eukaryotes - 1139 (source: NCBI BLink).  protein_id AT3G56840.1p  transcript_id AT3G56840.1  protein_id AT3G56840.1p  transcript_id AT3G56840.1  
At3g56850	chr3:021047154	0.0	C/21047154-21047894,21046999-21047070,21046554-21046634	AT3G56850.1  CDS  gene_syn ABA-RESPONSIVE ELEMENT BINDING PROTEIN 3, AREB3, DPBF3  gene AREB3  function Encodes an ABA-responsive element binding protein with a bZIP domain. Located in the nucleus and expressed in the embryo during seed maturation.  go_component nucleus|GO:0005634|15642716|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|11019812|TAS  go_process response to stress|GO:0006950|10636868|TAS  go_function DNA binding|GO:0003677|11005831|IPI  go_function DNA binding|GO:0003677|11005831|ISS  go_function transcription factor activity|GO:0003700|10760247|TAS  go_function transcription factor activity|GO:0003700|11019812|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription activator activity|GO:0016563|10636868|TAS  product AREB3 (ABA-RESPONSIVE ELEMENT BINDING PROTEIN 3); DNA binding / transcription activator/ transcription factor  note ABA-RESPONSIVE ELEMENT BINDING PROTEIN 3 (AREB3); FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, response to stress; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: EEL (ENHANCED EM LEVEL); DNA binding / transcription factor (TAIR:AT2G41070.3); Has 1399 Blast hits to 1366 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 251; Fungi - 27; Plants - 1075; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT3G56850.1p  transcript_id AT3G56850.1  protein_id AT3G56850.1p  transcript_id AT3G56850.1  
At3g56860	chr3:021050708	0.0	C/21050708-21052144	AT3G56860.1  CDS  gene_syn UBA2A, UBP1-ASSOCIATED PROTEIN 2A  gene UBA2A  function encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. Along with UBP1 and UBA1a, it may act as a component of a complex recognizing U-rich sequences in plant 3 -UTRs and contributing to the stabilization of mRNAs in the nucleus.  go_component nucleus|GO:0005634|12024044|IDA  go_process abscisic acid mediated signaling|GO:0009738|12181571|TAS  go_process mRNA stabilization|GO:0048255|12024044|NAS  go_function RNA binding|GO:0003723||ISS  go_function AU-rich element binding|GO:0017091|12024044|IDA  product UBP1 interacting protein 2a (UBA2a)  note UBP1-ASSOCIATED PROTEIN 2A (UBA2A); FUNCTIONS IN: RNA binding, AU-rich element binding; INVOLVED IN: abscisic acid mediated signaling, mRNA stabilization; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT2G41060.2); Has 28813 Blast hits to 17818 proteins in 656 species: Archae - 30; Bacteria - 1092; Metazoa - 15495; Fungi - 2886; Plants - 2787; Viruses - 467; Other Eukaryotes - 6056 (source: NCBI BLink).  protein_id AT3G56860.1p  transcript_id AT3G56860.1  protein_id AT3G56860.1p  transcript_id AT3G56860.1  
At3g56860	chr3:021050708	0.0	C/21050708-21052144	AT3G56860.2  CDS  gene_syn UBA2A, UBP1-ASSOCIATED PROTEIN 2A  gene UBA2A  function encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. Along with UBP1 and UBA1a, it may act as a component of a complex recognizing U-rich sequences in plant 3 -UTRs and contributing to the stabilization of mRNAs in the nucleus.  go_component nucleus|GO:0005634|12024044|IDA  go_process abscisic acid mediated signaling|GO:0009738|12181571|TAS  go_process mRNA stabilization|GO:0048255|12024044|NAS  go_function RNA binding|GO:0003723||ISS  go_function AU-rich element binding|GO:0017091|12024044|IDA  product UBP1 interacting protein 2a (UBA2a)  note UBP1-ASSOCIATED PROTEIN 2A (UBA2A); FUNCTIONS IN: RNA binding, AU-rich element binding; INVOLVED IN: abscisic acid mediated signaling, mRNA stabilization; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT2G41060.2); Has 28813 Blast hits to 17818 proteins in 656 species: Archae - 30; Bacteria - 1092; Metazoa - 15495; Fungi - 2886; Plants - 2787; Viruses - 467; Other Eukaryotes - 6056 (source: NCBI BLink).  protein_id AT3G56860.2p  transcript_id AT3G56860.2  protein_id AT3G56860.2p  transcript_id AT3G56860.2  
At3g56860	chr3:021050708	0.0	C/21050708-21052144	AT3G56860.3  CDS  gene_syn UBA2A, UBP1-ASSOCIATED PROTEIN 2A  gene UBA2A  function encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. Along with UBP1 and UBA1a, it may act as a component of a complex recognizing U-rich sequences in plant 3 -UTRs and contributing to the stabilization of mRNAs in the nucleus.  go_component nucleus|GO:0005634|12024044|IDA  go_process abscisic acid mediated signaling|GO:0009738|12181571|TAS  go_process mRNA stabilization|GO:0048255|12024044|NAS  go_function RNA binding|GO:0003723||ISS  go_function AU-rich element binding|GO:0017091|12024044|IDA  product UBP1 interacting protein 2a (UBA2a)  note UBP1-ASSOCIATED PROTEIN 2A (UBA2A); FUNCTIONS IN: RNA binding, AU-rich element binding; INVOLVED IN: abscisic acid mediated signaling, mRNA stabilization; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT2G41060.2); Has 28813 Blast hits to 17818 proteins in 656 species: Archae - 30; Bacteria - 1092; Metazoa - 15495; Fungi - 2886; Plants - 2787; Viruses - 467; Other Eukaryotes - 6056 (source: NCBI BLink).  protein_id AT3G56860.3p  transcript_id AT3G56860.3  protein_id AT3G56860.3p  transcript_id AT3G56860.3  
At3g56870	chr3:021053077	0.0	W/21053077-21054444,21054524-21054599,21054694-21055091,21055166-21055264,21055357-21055518	AT3G56870.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 167 Blast hits to 166 proteins in 42 species: Archae - 0; Bacteria - 4; Metazoa - 62; Fungi - 6; Plants - 23; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT3G56870.1p  transcript_id AT3G56870.1  protein_id AT3G56870.1p  transcript_id AT3G56870.1  
At3g56880	chr3:021060044	0.0	W/21060044-21060781	AT3G56880.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product VQ motif-containing protein  note VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: ATCAMBP25 (ARABIDOPSIS THALIANA CALMODULIN (CAM)-BINDING PROTEIN OF 25 KDA); calmodulin binding (TAIR:AT2G41010.1); Has 78 Blast hits to 78 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G56880.1p  transcript_id AT3G56880.1  protein_id AT3G56880.1p  transcript_id AT3G56880.1  
At3g56890	chr3:021063599	0.0	C/21063599-21063717,21062990-21063530	AT3G56890.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G57580.1); Has 231 Blast hits to 227 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 231; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G56890.1p  transcript_id AT3G56890.1  protein_id AT3G56890.1p  transcript_id AT3G56890.1  
At3g56891	chr3:021064875	0.0	C/21064875-21064922,21064698-21064773,21064199-21064575	AT3G56891.1  CDS  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  product metal ion binding  note metal ion binding; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121), Heavy-metal-associated, conserved site (InterPro:IPR017969); BEST Arabidopsis thaliana protein match is: metal ion binding (TAIR:AT2G18196.1); Has 890 Blast hits to 865 proteins in 129 species: Archae - 4; Bacteria - 62; Metazoa - 99; Fungi - 48; Plants - 666; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT3G56891.1p  transcript_id AT3G56891.1  protein_id AT3G56891.1p  transcript_id AT3G56891.1  
At3g56900	chr3:021066330	0.0	W/21066330-21066387,21066470-21066525,21066649-21066813,21067011-21067125,21067209-21067308,21067410-21067589,21067820-21067878,21068045-21068132,21068222-21068303,21068520-21068619,21068709-21068760,21068853-21068990,21069096-21069183,21069281-21069343	AT3G56900.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product aladin-related / adracalin-related  note aladin-related / adracalin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); Has 2829 Blast hits to 1743 proteins in 211 species: Archae - 52; Bacteria - 700; Metazoa - 1072; Fungi - 617; Plants - 176; Viruses - 0; Other Eukaryotes - 212 (source: NCBI BLink).  protein_id AT3G56900.1p  transcript_id AT3G56900.1  protein_id AT3G56900.1p  transcript_id AT3G56900.1  
At3g56910	chr3:021070161	0.0	C/21070161-21070257,21069558-21069907	AT3G56910.1  CDS  gene_syn PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5, PSRP5  gene PSRP5  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)  note PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5 (PSRP5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 25 Blast hits to 25 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G56910.1p  transcript_id AT3G56910.1  protein_id AT3G56910.1p  transcript_id AT3G56910.1  
At3g56920	chr3:021070834	0.0	W/21070834-21070890,21071219-21071398,21071496-21071801,21071892-21072113,21072190-21072441	AT3G56920.1  CDS  go_function zinc ion binding|GO:0008270||IEA  product zinc finger (DHHC type) family protein  note zinc finger (DHHC type) family protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT2G40990.1); Has 3965 Blast hits to 3954 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 1949; Fungi - 529; Plants - 403; Viruses - 0; Other Eukaryotes - 1084 (source: NCBI BLink).  protein_id AT3G56920.1p  transcript_id AT3G56920.1  protein_id AT3G56920.1p  transcript_id AT3G56920.1  
At3g56930	chr3:021073805	0.0	W/21073805-21073861,21074250-21074438,21074521-21074829,21074902-21075135,21075229-21075873	AT3G56930.1  CDS  gene_syn T8M16.5  go_component plasma membrane|GO:0005886|17317660|IDA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc finger (DHHC type) family protein  note zinc finger (DHHC type) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT5G05070.1); Has 4027 Blast hits to 4017 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 1964; Fungi - 537; Plants - 412; Viruses - 2; Other Eukaryotes - 1112 (source: NCBI BLink).  protein_id AT3G56930.1p  transcript_id AT3G56930.1  protein_id AT3G56930.1p  transcript_id AT3G56930.1  
At3g56940	chr3:021076594	0.0	W/21076594-21077067,21077282-21077346,21077423-21077750,21077828-21077926,21078006-21078269	AT3G56940.1  CDS  gene_syn ACSF, CHL27, COPPER RESPONSE DEFECT 1, CRD1, T8M16.1  gene CRD1  function Encodes a putative ZIP protein with varying mRNA accumulation in leaves, stems and roots. Has a consensus carboxylate-bridged di-iron binding site.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process photosynthesis|GO:0015979||IEA  go_process chlorophyll biosynthetic process|GO:0015995||IEA  go_component chloroplast thylakoid membrane|GO:0009535|14673103|IDA  go_component chloroplast inner membrane|GO:0009706|14673103|IDA  go_function DNA binding|GO:0003677|11958125|TAS  go_function magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity|GO:0048529|14673103|IMP  go_function magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity|GO:0048529|15632054|NAS  product CRD1 (COPPER RESPONSE DEFECT 1); DNA binding / magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase  note COPPER RESPONSE DEFECT 1 (CRD1); FUNCTIONS IN: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity, DNA binding; INVOLVED IN: chlorophyll biosynthetic process, photosynthesis; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase (InterPro:IPR008434), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078), Rubrerythrin (InterPro:IPR003251); Has 753 Blast hits to 752 proteins in 161 species: Archae - 0; Bacteria - 255; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 353 (source: NCBI BLink).  protein_id AT3G56940.1p  transcript_id AT3G56940.1  protein_id AT3G56940.1p  transcript_id AT3G56940.1  
At3g56950	chr3:021079357	0.0	C/21079357-21079644,21078839-21079099,21078586-21078750	AT3G56950.1  CDS  gene_syn SIP2, SIP2;1, SMALL AND BASIC INTRINSIC PROTEIN 2, T8M16.9  gene SIP2;1  function One of the Major Intrinsic Proteins(MIPs) which facilitate the passive transport of small molecules across membranes.Belongs to a family of plant aquaporins.Similar to yeast and radish aquaporins. Located on ER.  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||IEA  go_component endoplasmic reticulum|GO:0005783|16223486|IDA  go_component membrane|GO:0016020|11152613|ISS  product SIP2;1; transporter  note SIP2;1; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: SIP1;2; water channel (TAIR:AT5G18290.1); Has 834 Blast hits to 834 proteins in 209 species: Archae - 7; Bacteria - 130; Metazoa - 192; Fungi - 75; Plants - 383; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT3G56950.1p  transcript_id AT3G56950.1  protein_id AT3G56950.1p  transcript_id AT3G56950.1  
At3g56960	chr3:021080957	0.0	W/21080957-21082158,21082247-21082414,21082500-21082665,21082746-21082862,21082951-21083144,21083223-21083353,21083440-21083512,21083597-21083885	AT3G56960.1  CDS  gene_syn PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE 4, PIP5K4, T8M16.6  gene PIP5K4  function Encodes a protein with phosphatidylinositol-4-phosphate 5-kinase activity that plays a role in pollen tip growth. The enzyme localizes to the apical plasma membrane and adjacent cytosolic region of pollen tubes. Overexpression of this gene leads to increased deposition of pectin in the cell wall at the tip of the pollen tube and causes altered pollen tube morphology.  go_component plasma membrane|GO:0005886|17883374|IDA  go_component apical plasma membrane|GO:0016324|19060112|IDA  go_component cytosolic part|GO:0044445|19060112|IDA  go_process endocytosis|GO:0006897|19033528|IMP  go_process establishment of tissue polarity|GO:0007164|19033528|IMP  go_process plant-type cell wall modification|GO:0009827|19060112|IMP  go_process pollen germination|GO:0009846|19060112|IGI  go_process pollen tube growth|GO:0009860|19033528|IMP  go_process pollen tube growth|GO:0009860|19060112|IGI  go_process stomatal movement|GO:0010118|17883374|IMP  go_process phosphatidylinositol metabolic process|GO:0046488|19060112|IDA  go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308|17883374|IDA  go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308||ISS  product PIP5K4 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE 4); 1-phosphatidylinositol-4-phosphate 5-kinase  note PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE 4 (PIP5K4); FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity; INVOLVED IN: in 7 processes; LOCATED IN: apical plasma membrane, cytosolic part, plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, plant (InterPro:IPR017163), MORN motif (InterPro:IPR003409), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: PIP5K5 (PHOSPHATIDYLINOSITOL- 4-PHOSPHATE 5-KINASE 5); 1-phosphatidylinositol-4-phosphate 5-kinase (TAIR:AT2G41210.1); Has 22344 Blast hits to 6204 proteins in 378 species: Archae - 2; Bacteria - 2324; Metazoa - 3531; Fungi - 294; Plants - 714; Viruses - 0; Other Eukaryotes - 15479 (source: NCBI BLink).  protein_id AT3G56960.1p  transcript_id AT3G56960.1  protein_id AT3G56960.1p  transcript_id AT3G56960.1  
At3g56970	chr3:021084783	0.0	C/21084783-21085094,21084204-21084653	AT3G56970.1  CDS  gene_syn BHLH038, OBP3-RESPONSIVE GENE 3, ORG2, T8M16.7  gene BHLH038  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product BHLH038; DNA binding / transcription factor  note BHLH038; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Achaete-scute transcription factor related (InterPro:IPR015660), Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BHLH039; DNA binding / transcription factor (TAIR:AT3G56980.1); Has 266 Blast hits to 265 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 81; Fungi - 8; Plants - 176; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G56970.1p  transcript_id AT3G56970.1  protein_id AT3G56970.1p  transcript_id AT3G56970.1  
At3g56980	chr3:021087168	0.0	C/21087168-21087494,21086612-21087061	AT3G56980.1  CDS  gene_syn BHLH039, OBP3-RESPONSIVE GENE 3, ORG3, T8M16.8  gene BHLH039  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product BHLH039; DNA binding / transcription factor  note BHLH039; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, LP.12 twelve leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Achaete-scute transcription factor related (InterPro:IPR015660), Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BHLH038; DNA binding / transcription factor (TAIR:AT3G56970.1); Has 295 Blast hits to 295 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 71; Fungi - 5; Plants - 219; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G56980.1p  transcript_id AT3G56980.1  protein_id AT3G56980.1p  transcript_id AT3G56980.1  
At3g56990	chr3:021091847	0.0	C/21091847-21091976,21091647-21091745,21091465-21091556,21091269-21091369,21091113-21091203,21090960-21091018,21090721-21090841,21090538-21090606,21090381-21090433,21090173-21090281,21089886-21090056,21089630-21089788,21089430-21089522,21089151-21089336,21088845-21089050,21088358-21088754	AT3G56990.1  CDS  gene_syn EDA7, embryo sac development arrest 7  gene EDA7  go_component nucleolus|GO:0005730|15496452|IDA  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process megagametogenesis|GO:0009561|15634699|IMP  go_function molecular_function|GO:0003674||ND  product EDA7 (embryo sac development arrest 7)  note embryo sac development arrest 7 (EDA7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: megagametogenesis; LOCATED IN: nucleolus, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), NUC153 (InterPro:IPR012580), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); Has 3435 Blast hits to 2597 proteins in 327 species: Archae - 0; Bacteria - 215; Metazoa - 1552; Fungi - 648; Plants - 432; Viruses - 52; Other Eukaryotes - 536 (source: NCBI BLink).  protein_id AT3G56990.1p  transcript_id AT3G56990.1  protein_id AT3G56990.1p  transcript_id AT3G56990.1  
At3g57000	chr3:021092610	0.0	W/21092610-21092930,21093014-21093106,21093190-21093334,21093431-21093544,21093641-21093726,21093868-21093925,21094030-21094109	AT3G57000.1  CDS  go_component nucleus|GO:0005634||IEA  go_function molecular_function|GO:0003674||ND  product nucleolar essential protein-related  note nucleolar essential protein-related; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal biogenesis, methyltransferase, EMG1/NEP1 (InterPro:IPR005304); Has 1252 Blast hits to 912 proteins in 202 species: Archae - 94; Bacteria - 9; Metazoa - 674; Fungi - 138; Plants - 36; Viruses - 2; Other Eukaryotes - 299 (source: NCBI BLink).  protein_id AT3G57000.1p  transcript_id AT3G57000.1  protein_id AT3G57000.1p  transcript_id AT3G57000.1  
At3g57010	chr3:021097030	0.0	C/21097030-21097316,21096638-21096892,21095854-21096442	AT3G57010.1  CDS  go_process biosynthetic process|GO:0009058||IEA  go_function strictosidine synthase activity|GO:0016844||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process alkaloid biosynthetic process|GO:0009821||ISS  go_function strictosidine synthase activity|GO:0016844||ISS  product strictosidine synthase family protein  note strictosidine synthase family protein; FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: alkaloid biosynthetic process, biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Strictosidine synthase, conserved region (InterPro:IPR018119), Strictosidine synthase (InterPro:IPR004141), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: strictosidine synthase family protein (TAIR:AT3G57020.1); Has 704 Blast hits to 697 proteins in 135 species: Archae - 1; Bacteria - 128; Metazoa - 196; Fungi - 0; Plants - 299; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT3G57010.1p  transcript_id AT3G57010.1  protein_id AT3G57010.1p  transcript_id AT3G57010.1  
At3g57020	chr3:021100020	0.0	C/21100020-21100303,21099234-21099446,21098515-21099088	AT3G57020.2  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_process biosynthetic process|GO:0009058||IEA  go_function strictosidine synthase activity|GO:0016844||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process alkaloid biosynthetic process|GO:0009821||ISS  go_function strictosidine synthase activity|GO:0016844||ISS  product strictosidine synthase family protein  note strictosidine synthase family protein; FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: alkaloid biosynthetic process, biosynthetic process; LOCATED IN: endoplasmic reticulum, vacuole; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Strictosidine synthase, conserved region (InterPro:IPR018119), Strictosidine synthase (InterPro:IPR004141), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: strictosidine synthase family protein (TAIR:AT3G57010.1); Has 733 Blast hits to 725 proteins in 143 species: Archae - 1; Bacteria - 141; Metazoa - 195; Fungi - 4; Plants - 299; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT3G57020.2p  transcript_id AT3G57020.2  protein_id AT3G57020.2p  transcript_id AT3G57020.2  
At3g57020	chr3:021100020	0.0	C/21100020-21100303,21099234-21099488,21098515-21099088	AT3G57020.1  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_process biosynthetic process|GO:0009058||IEA  go_function strictosidine synthase activity|GO:0016844||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process alkaloid biosynthetic process|GO:0009821||ISS  go_function strictosidine synthase activity|GO:0016844||ISS  product strictosidine synthase family protein  note strictosidine synthase family protein; FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: alkaloid biosynthetic process, biosynthetic process; LOCATED IN: endoplasmic reticulum, vacuole; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Strictosidine synthase, conserved region (InterPro:IPR018119), Strictosidine synthase (InterPro:IPR004141), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: strictosidine synthase family protein (TAIR:AT3G57010.1); Has 738 Blast hits to 731 proteins in 140 species: Archae - 1; Bacteria - 131; Metazoa - 210; Fungi - 4; Plants - 298; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).  protein_id AT3G57020.1p  transcript_id AT3G57020.1  protein_id AT3G57020.1p  transcript_id AT3G57020.1  
At3g57030	chr3:021102912	0.0	C/21102912-21103204,21102385-21102648,21101653-21102220	AT3G57030.1  CDS  go_component plasma membrane|GO:0005886|17644812|IDA  go_process biosynthetic process|GO:0009058||IEA  go_function strictosidine synthase activity|GO:0016844||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process alkaloid biosynthetic process|GO:0009821||ISS  go_function strictosidine synthase activity|GO:0016844||ISS  product strictosidine synthase family protein  note strictosidine synthase family protein; FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: alkaloid biosynthetic process, biosynthetic process; LOCATED IN: endoplasmic reticulum, plasma membrane, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Strictosidine synthase, conserved region (InterPro:IPR018119), Strictosidine synthase (InterPro:IPR004141), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: strictosidine synthase family protein (TAIR:AT5G22020.1); Has 821 Blast hits to 814 proteins in 170 species: Archae - 1; Bacteria - 197; Metazoa - 197; Fungi - 12; Plants - 301; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).  protein_id AT3G57030.1p  transcript_id AT3G57030.1  protein_id AT3G57030.1p  transcript_id AT3G57030.1  
At3g57040	chr3:021110059	0.0	W/21110059-21110161,21110257-21110363,21110465-21110542,21110697-21110767,21110883-21111228	AT3G57040.1  CDS  gene_syn ARR9, ATRR4, F24I3_120, RESPONSE REGULATOR 4, RESPONSE REGULATOR 9  gene ARR9  function response regulator ARR9, A two-component response regulator-like protein with a receiver domain with a conserved aspartate residue and a possible phosphorylation site and at the N-terminal half. Appears to interact with histidine kinase like genes ATHP3 and ATHP2  go_component nucleus|GO:0005634|18642946|IDA  go_process two-component signal transduction system (phosphorelay)|GO:0000160|10930466|IPI  go_process circadian rhythm|GO:0007623|16326927|IMP  go_process response to cytokinin stimulus|GO:0009735|16407152|IEP  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_process cytokinin mediated signaling|GO:0009736|18065689|IMP  go_function two-component response regulator activity|GO:0000156|12068096|ISS  go_function two-component response regulator activity|GO:0000156|9607306|ISS  go_function two-component response regulator activity|GO:0000156||ISS  go_function transcription regulator activity|GO:0030528|12068096|TAS  product ARR9 (RESPONSE REGULATOR 9); transcription regulator/ two-component response regulator  note RESPONSE REGULATOR 9 (ARR9); FUNCTIONS IN: transcription regulator activity, two-component response regulator activity; INVOLVED IN: cytokinin mediated signaling, circadian rhythm, response to cytokinin stimulus, two-component signal transduction system (phosphorelay); LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver region (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: ATRR3 (RESPONSE REGULATOR 3); transcription regulator/ two-component response regulator (TAIR:AT2G41310.1); Has 19869 Blast hits to 19668 proteins in 1370 species: Archae - 128; Bacteria - 16287; Metazoa - 4; Fungi - 223; Plants - 653; Viruses - 4; Other Eukaryotes - 2570 (source: NCBI BLink).  protein_id AT3G57040.1p  transcript_id AT3G57040.1  protein_id AT3G57040.1p  transcript_id AT3G57040.1  
At3g57050	chr3:021114459	0.0	C/21114459-21114521,21114162-21114330,21113944-21114059,21113793-21113863,21113601-21113692,21113408-21113495,21113208-21113319,21113006-21113102,21112819-21112900,21112621-21112738,21112392-21112520	AT3G57050.3  CDS  gene_syn CBL, cystathionine beta-lyase  gene CBL  function Encodes second enzyme in the methionine biosynthetic pathway  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|8541513|ISS  go_process methionine biosynthetic process from L-homoserine via cystathionine|GO:0019279|8541513|TAS  go_function cystathionine beta-lyase activity|GO:0004121|8541513|IMP  product CBL (cystathionine beta-lyase); cystathionine beta-lyase  note cystathionine beta-lyase (CBL); FUNCTIONS IN: cystathionine beta-lyase activity; INVOLVED IN: methionine biosynthetic process from L-homoserine via cystathionine; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Cys/Met metabolism, pyridoxal phosphate-dependent enzyme (InterPro:IPR000277), Cystathionine beta-lyase, eukaryotic (InterPro:IPR006238), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: MTO1 (METHIONINE OVERACCUMULATION 1); cystathionine gamma-synthase (TAIR:AT3G01120.1); Has 13693 Blast hits to 13690 proteins in 1327 species: Archae - 128; Bacteria - 6395; Metazoa - 175; Fungi - 504; Plants - 189; Viruses - 1; Other Eukaryotes - 6301 (source: NCBI BLink).  protein_id AT3G57050.3p  transcript_id AT3G57050.3  protein_id AT3G57050.3p  transcript_id AT3G57050.3  
At3g57050	chr3:021114459	0.0	C/21114459-21114521,21114162-21114330,21113944-21114059,21113793-21113863,21113601-21113692,21113408-21113495,21113208-21113319,21113006-21113102,21112819-21112900,21112621-21112738,21112413-21112520,21112221-21112323,21111939-21112114	AT3G57050.1  CDS  gene_syn CBL, cystathionine beta-lyase  gene CBL  function Encodes second enzyme in the methionine biosynthetic pathway  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|8541513|ISS  go_process methionine biosynthetic process from L-homoserine via cystathionine|GO:0019279|8541513|TAS  go_function cystathionine beta-lyase activity|GO:0004121|8541513|IMP  product CBL (cystathionine beta-lyase); cystathionine beta-lyase  note cystathionine beta-lyase (CBL); FUNCTIONS IN: cystathionine beta-lyase activity; INVOLVED IN: methionine biosynthetic process from L-homoserine via cystathionine; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Cys/Met metabolism, pyridoxal phosphate-dependent enzyme (InterPro:IPR000277), Cystathionine beta-lyase, eukaryotic (InterPro:IPR006238), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: MTO1 (METHIONINE OVERACCUMULATION 1); cystathionine gamma-synthase (TAIR:AT3G01120.1); Has 14696 Blast hits to 14690 proteins in 1332 species: Archae - 128; Bacteria - 6441; Metazoa - 194; Fungi - 531; Plants - 190; Viruses - 1; Other Eukaryotes - 7211 (source: NCBI BLink).  protein_id AT3G57050.1p  transcript_id AT3G57050.1  protein_id AT3G57050.1p  transcript_id AT3G57050.1  
At3g57050	chr3:021114459	0.0	C/21114459-21114521,21114207-21114330,21113944-21114059,21113793-21113863,21113601-21113692,21113408-21113495,21113208-21113319,21113006-21113102,21112819-21112900,21112621-21112738,21112413-21112520,21112221-21112323,21111939-21112114	AT3G57050.2  CDS  gene_syn CBL, cystathionine beta-lyase  gene CBL  function Encodes second enzyme in the methionine biosynthetic pathway  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|8541513|ISS  go_process methionine biosynthetic process from L-homoserine via cystathionine|GO:0019279|8541513|TAS  go_function cystathionine beta-lyase activity|GO:0004121|8541513|IMP  product CBL (cystathionine beta-lyase); cystathionine beta-lyase  note cystathionine beta-lyase (CBL); FUNCTIONS IN: cystathionine beta-lyase activity; INVOLVED IN: methionine biosynthetic process from L-homoserine via cystathionine; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Cys/Met metabolism, pyridoxal phosphate-dependent enzyme (InterPro:IPR000277), Cystathionine beta-lyase, eukaryotic (InterPro:IPR006238), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: MTO1 (METHIONINE OVERACCUMULATION 1); cystathionine gamma-synthase (TAIR:AT3G01120.1); Has 14695 Blast hits to 14689 proteins in 1332 species: Archae - 128; Bacteria - 6443; Metazoa - 194; Fungi - 531; Plants - 190; Viruses - 1; Other Eukaryotes - 7208 (source: NCBI BLink).  protein_id AT3G57050.2p  transcript_id AT3G57050.2  protein_id AT3G57050.2p  transcript_id AT3G57050.2  
At3g57060	chr3:021120916	0.0	C/21120916-21121051,21120285-21120607,21120038-21120198,21118769-21119948,21118464-21118655,21117618-21118271,21117343-21117519,21117151-21117218,21116838-21117060,21116654-21116753,21116446-21116561,21116304-21116361,21116065-21116216,21115779-21115983,21115303-21115665,21115078-21115160	AT3G57060.1  CDS  go_component nucleus|GO:0005634||IEA  go_process mitosis|GO:0007067||IEA  go_process chromosome condensation|GO:0030261||IEA  go_function binding|GO:0005488||IEA  go_component condensin complex|GO:0000796||ISS  go_process chromosome condensation|GO:0030261||ISS  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: mitosis, chromosome condensation; LOCATED IN: nucleus, condensin complex; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Non-SMC condensin subunit, XCAP-D2/Cnd1 (InterPro:IPR007673), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT4G15890.1); Has 13291 Blast hits to 8125 proteins in 563 species: Archae - 48; Bacteria - 996; Metazoa - 5734; Fungi - 1508; Plants - 442; Viruses - 209; Other Eukaryotes - 4354 (source: NCBI BLink).  protein_id AT3G57060.1p  transcript_id AT3G57060.1  protein_id AT3G57060.1p  transcript_id AT3G57060.1  
At3g57062	chr3:021121443	0.0	W/21121443-21121589	AT3G57062.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 5 Blast hits to 5 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G57062.1p  transcript_id AT3G57062.1  protein_id AT3G57062.1p  transcript_id AT3G57062.1  
At3g57070	chr3:021124174	0.0	W/21124174-21125427	AT3G57070.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  product glutaredoxin family protein  note glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: N-terminal protein myristoylation, cell redox homeostasis; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin family protein (TAIR:AT2G41330.1); Has 1064 Blast hits to 454 proteins in 77 species: Archae - 0; Bacteria - 27; Metazoa - 120; Fungi - 3; Plants - 210; Viruses - 0; Other Eukaryotes - 704 (source: NCBI BLink).  protein_id AT3G57070.1p  transcript_id AT3G57070.1  protein_id AT3G57070.1p  transcript_id AT3G57070.1  
At3g57072	chr3:021125699	0.0	C/21125699-21125836	AT3G57072.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G57072.1p  transcript_id AT3G57072.1  protein_id AT3G57072.1p  transcript_id AT3G57072.1  
At3g57080	chr3:021125878	0.0	W/21125878-21126129,21126882-21127058,21127151-21127264,21127345-21127470	AT3G57080.1  CDS  gene_syn NRPE5, RNA POLYMERASE II FIFTH LARGEST SUBUNIT, B, RPB5B  gene NRPE5  function Non-catalytic subunit unique to Nuclear DNA-dependent RNA polymerase V; homologous to budding yeast RPB5.  go_process transcription|GO:0006350||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_component DNA-directed RNA polymerase V complex|GO:0080137|19110459|IPI  go_process transcription|GO:0006350||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product NRPE5; DNA binding / DNA-directed RNA polymerase  note NRPE5; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: DNA-directed RNA polymerase V complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, Rpb5, N-terminal (InterPro:IPR005571), RNA polymerase, subunit H/Rpb5 C-terminal (InterPro:IPR000783), DNA-directed RNA polymerase, RPB5 subunit (InterPro:IPR014381); BEST Arabidopsis thaliana protein match is: RPB5D (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, D); DNA binding / DNA-directed RNA polymerase (TAIR:AT2G41340.1); Has 663 Blast hits to 663 proteins in 224 species: Archae - 122; Bacteria - 0; Metazoa - 128; Fungi - 144; Plants - 73; Viruses - 2; Other Eukaryotes - 194 (source: NCBI BLink).  protein_id AT3G57080.1p  transcript_id AT3G57080.1  protein_id AT3G57080.1p  transcript_id AT3G57080.1  
At3g57090	chr3:021128627	0.0	W/21128627-21128719,21129123-21129261,21129424-21129545,21129672-21129735,21129887-21129981	AT3G57090.1  CDS  gene_syn BIGYIN, FIS1A  gene BIGYIN  function Encodes a protein with similarity to yeast FIS proteins. These membrane anchored proteins bind DRP proteins and function during organelle division. FIS1B is expressed ubiquitously and appears to be involved in peroxisome division.  go_component chloroplast|GO:0009507|18431481|IDA  go_function binding|GO:0005488||IEA  go_component mitochondrion|GO:0005739|18785999|IDA  go_component peroxisome|GO:0005777|18785999|IDA  go_process mitochondrion organization|GO:0007005|16510519|IMP  go_process peroxisome fission|GO:0016559|18785999|IMP  product BIGYIN; binding  note BIGYIN; FUNCTIONS IN: binding; INVOLVED IN: peroxisome fission, mitochondrion organization; LOCATED IN: mitochondrion, peroxisome, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide repeat 11 Fission 1 protein (InterPro:IPR016543), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: FIS1B (FISSION 1B); binding (TAIR:AT5G12390.1); Has 228 Blast hits to 227 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 100; Plants - 47; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G57090.1p  transcript_id AT3G57090.1  protein_id AT3G57090.1p  transcript_id AT3G57090.1  
At3g57100	chr3:021133256	0.0	C/21133256-21134335	AT3G57100.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34320.1); Has 72 Blast hits to 72 proteins in 8 species: Archae - 2; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G57100.1p  transcript_id AT3G57100.1  protein_id AT3G57100.1p  transcript_id AT3G57100.1  
At3g57110	chr3:021134924	0.0	W/21134924-21135334	AT3G57110.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G60370.1); Has 11 Blast hits to 11 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G57110.1p  transcript_id AT3G57110.1  protein_id AT3G57110.1p  transcript_id AT3G57110.1  
At3g57120	chr3:021139099	0.0	W/21139099-21140469	AT3G57120.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (TAIR:AT1G51940.1); Has 26518 Blast hits to 23807 proteins in 1015 species: Archae - 10; Bacteria - 2476; Metazoa - 6899; Fungi - 1010; Plants - 12189; Viruses - 108; Other Eukaryotes - 3826 (source: NCBI BLink).  protein_id AT3G57120.1p  transcript_id AT3G57120.1  protein_id AT3G57120.1p  transcript_id AT3G57120.1  
At3g57130	chr3:021147835	0.0	W/21147835-21148305,21149095-21150027	AT3G57130.1  CDS  gene_syn BLADE ON PETIOLE 1, BOP1  gene BOP1  function ankyrin repeat family protein / BTB/POZ domain-containing protein, contains Pfam domain, PF00023: Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain. Lines carrying recessive mutations exhibit a number of visible defects, most pronounced being ectopic outgrowths of in leaf petioles of rosette leaves.Along with bop2, bop1 is required for nectary development and formation of normal abscission zones.  go_process polarity specification of adaxial/abaxial axis|GO:0009944|17601823|IGI  go_process proximal/distal pattern formation|GO:0009954|15805484|IGI  go_process meristem determinacy|GO:0010022|12441300|IMP  go_process floral organ abscission|GO:0010227|15805484|IGI  go_process nectary development|GO:0010254|18339677|IGI  go_process flower morphogenesis|GO:0048439|15805484|IGI  go_function protein binding|GO:0005515|15805484|IPI  go_function protein binding|GO:0005515||ISS  product BOP1 (BLADE ON PETIOLE 1); protein binding  note BLADE ON PETIOLE 1 (BOP1); FUNCTIONS IN: protein binding; INVOLVED IN: in 6 processes; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: BOP2 (BLADE ON PETIOLE2); protein binding (TAIR:AT2G41370.1); Has 3422 Blast hits to 3199 proteins in 257 species: Archae - 15; Bacteria - 178; Metazoa - 1611; Fungi - 103; Plants - 768; Viruses - 32; Other Eukaryotes - 715 (source: NCBI BLink).  protein_id AT3G57130.1p  transcript_id AT3G57130.1  protein_id AT3G57130.1p  transcript_id AT3G57130.1  
At3g57140	chr3:021151897	0.0	C/21151897-21153315,21151675-21151818,21150742-21151584	AT3G57140.1  CDS  gene_syn SDP1-LIKE, SUGAR-DEPENDENT 1-LIKE  gene SDP1-LIKE  go_process lipid metabolic process|GO:0006629||IEA  go_process metabolic process|GO:0008152||IEA  go_function GTP binding|GO:0005525||IEA  go_component cellular_component|GO:0005575||ND  product patatin-related  note SUGAR-DEPENDENT 1-LIKE (SDP1-LIKE); FUNCTIONS IN: GTP binding; INVOLVED IN: metabolic process, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), ARF/SAR superfamily (InterPro:IPR006689), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: SDP1 (SUGAR-DEPENDENT1); triacylglycerol lipase (TAIR:AT5G04040.1); Has 724 Blast hits to 711 proteins in 239 species: Archae - 0; Bacteria - 300; Metazoa - 16; Fungi - 248; Plants - 43; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT3G57140.1p  transcript_id AT3G57140.1  protein_id AT3G57140.1p  transcript_id AT3G57140.1  
At3g57140	chr3:021151897	0.0	C/21151897-21153315,21151675-21151818,21150742-21151584	AT3G57140.2  CDS  gene_syn SDP1-LIKE, SUGAR-DEPENDENT 1-LIKE  gene SDP1-LIKE  go_process lipid metabolic process|GO:0006629||IEA  go_process metabolic process|GO:0008152||IEA  go_function GTP binding|GO:0005525||IEA  go_component cellular_component|GO:0005575||ND  product patatin-related  note SUGAR-DEPENDENT 1-LIKE (SDP1-LIKE); FUNCTIONS IN: GTP binding; INVOLVED IN: metabolic process, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), ARF/SAR superfamily (InterPro:IPR006689), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: SDP1 (SUGAR-DEPENDENT1); triacylglycerol lipase (TAIR:AT5G04040.1); Has 724 Blast hits to 711 proteins in 239 species: Archae - 0; Bacteria - 300; Metazoa - 16; Fungi - 248; Plants - 43; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT3G57140.2p  transcript_id AT3G57140.2  protein_id AT3G57140.2p  transcript_id AT3G57140.2  
At3g57150	chr3:021154255	0.0	C/21154255-21155952	AT3G57150.1  CDS  gene_syn Arabidopsis thaliana homologue of NAP57, AtCBF5, AtNAP57, CBF5, NAP57  gene NAP57  function Encodes a putative pseudouridine synthase (NAP57).  go_component nucleolus|GO:0005730|15496452|IDA  go_process pseudouridine synthesis|GO:0001522||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_function pseudouridine synthase activity|GO:0009982|11833778|ISS  go_function pseudouridine synthase activity|GO:0009982|18599582|TAS  product NAP57 (Arabidopsis thaliana homologue of NAP57); pseudouridine synthase  note Arabidopsis thaliana homologue of NAP57 (NAP57); FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis; LOCATED IN: cytosol, nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PUA-like (InterPro:IPR015947), PUA (InterPro:IPR002478), Putative rRNA pseudouridine synthase (InterPro:IPR004802), Uncharacterized domain 2 (InterPro:IPR004521), DKCLD (InterPro:IPR012960), tRNA pseudouridine synthase B, N-terminal (InterPro:IPR002501); BEST Arabidopsis thaliana protein match is: pseudouridine synthase/ transporter (TAIR:AT5G14460.1); Has 104278 Blast hits to 45324 proteins in 2371 species: Archae - 389; Bacteria - 10419; Metazoa - 42875; Fungi - 10157; Plants - 4226; Viruses - 749; Other Eukaryotes - 35463 (source: NCBI BLink).  protein_id AT3G57150.1p  transcript_id AT3G57150.1  protein_id AT3G57150.1p  transcript_id AT3G57150.1  
At3g57157	chr3:021157011	0.0	W/21157011-21157247	AT3G57157.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G57157.1  
At3g57160	chr3:021158713	0.0	C/21158713-21158715,21158291-21158507,21157770-21157897	AT3G57160.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G57160.1p  transcript_id AT3G57160.1  protein_id AT3G57160.1p  transcript_id AT3G57160.1  
At3g57170	chr3:021162158	0.0	C/21162158-21162259,21161924-21162064,21161731-21161837,21161420-21161641,21160688-21161182,21160026-21160435,21159824-21159917,21159620-21159731	AT3G57170.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process GPI anchor biosynthetic process|GO:0006506||IEA  go_function phosphatidylinositol N-acetylglucosaminyltransferase activity|GO:0017176||IEA  go_process GPI anchor biosynthetic process|GO:0006506||ISS  go_function transferase activity|GO:0016740||ISS  product N-acetylglucosaminyl transferase component family protein / Gpi1 family protein  note N-acetylglucosaminyl transferase component family protein / Gpi1 family protein; FUNCTIONS IN: transferase activity, phosphatidylinositol N-acetylglucosaminyltransferase activity; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: N-acetylglucosaminyl transferase component (InterPro:IPR007720); Has 246 Blast hits to 246 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 84; Plants - 15; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT3G57170.1p  transcript_id AT3G57170.1  protein_id AT3G57170.1p  transcript_id AT3G57170.1  
At3g57180	chr3:021165892	0.0	C/21165892-21166006,21165337-21165809,21164468-21165289,21164104-21164271,21163663-21164019	AT3G57180.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_function GTP binding|GO:0005525||IEA  go_process biological_process|GO:0008150||ND  product GTP binding  note GTP binding; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10620.1); Has 5284 Blast hits to 3257 proteins in 509 species: Archae - 66; Bacteria - 599; Metazoa - 2425; Fungi - 533; Plants - 173; Viruses - 94; Other Eukaryotes - 1394 (source: NCBI BLink).  protein_id AT3G57180.1p  transcript_id AT3G57180.1  protein_id AT3G57180.1p  transcript_id AT3G57180.1  
At3g57190	chr3:021166468	0.0	W/21166468-21166603,21166752-21166969,21167054-21167254,21167350-21167556,21167657-21167828,21167912-21168198	AT3G57190.1  CDS  go_component cytoplasm|GO:0005737||IEA  go_process translational termination|GO:0006415||IEA  go_function translation release factor activity, codon specific|GO:0016149||IEA  go_process translational termination|GO:0006415||ISS  go_function translation release factor activity|GO:0003747||ISS  product peptide chain release factor, putative  note peptide chain release factor, putative; FUNCTIONS IN: translation release factor activity, codon specific, translation release factor activity; INVOLVED IN: translational termination; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptide chain release factor (InterPro:IPR005139); BEST Arabidopsis thaliana protein match is: HCF109 (HIGH CHLOROPHYLL FLUORESCENT 109); translation release factor/ translation release factor, codon specific (TAIR:AT5G36170.2); Has 8986 Blast hits to 8982 proteins in 1511 species: Archae - 0; Bacteria - 4973; Metazoa - 93; Fungi - 76; Plants - 91; Viruses - 0; Other Eukaryotes - 3753 (source: NCBI BLink).  protein_id AT3G57190.1p  transcript_id AT3G57190.1  protein_id AT3G57190.1p  transcript_id AT3G57190.1  
At3g57200	chr3:021169413	0.0	W/21169413-21169757,21169895-21170044,21170129-21170181,21170316-21170424,21170540-21170674,21170758-21170802,21170942-21171129,21171332-21171473,21171561-21171607,21171689-21171776,21171861-21172103	AT3G57200.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41451.1); Has 49 Blast hits to 49 proteins in 18 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G57200.1p  transcript_id AT3G57200.1  protein_id AT3G57200.1p  transcript_id AT3G57200.1  
At3g57210	chr3:021173848	0.0	C/21173848-21173953,21173362-21173732	AT3G57210.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: emb2204 (embryo defective 2204) (TAIR:AT1G22090.1); Has 57 Blast hits to 56 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G57210.1p  transcript_id AT3G57210.1  protein_id AT3G57210.1p  transcript_id AT3G57210.1  
At3g57220	chr3:021174516	0.0	W/21174516-21174883,21175107-21175194,21175319-21175410,21175490-21175608,21175692-21175807,21175916-21176043,21176151-21176237,21176352-21176412,21176498-21176538,21176625-21176745,21176845-21176904	AT3G57220.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_component endoplasmic reticulum|GO:0005783|10517826|TAS  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process polysaccharide biosynthetic process|GO:0000271|10517826|IDA  go_function UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity|GO:0003975|10517826|IMP  go_function UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity|GO:0003975||ISS  product UDP-GlcNAc:dolichol phosphate N-acetylglucosamine-1-phosphate transferase, putative  note UDP-GlcNAc:dolichol phosphate N-acetylglucosamine-1-phosphate transferase, putative; FUNCTIONS IN: UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity; INVOLVED IN: polysaccharide biosynthetic process; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 4, conserved region (InterPro:IPR018481); BEST Arabidopsis thaliana protein match is: GPT (UDP-GLCNAC%3ADOLICHOL+PHOSPHATE+GLCNAC-1-P+TRANSFERASE); UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase (TAIR:AT2G41490.1); Has 4108 Blast hits to 4107 proteins in 1267 species: Archae - 90; Bacteria - 2863; Metazoa - 110; Fungi - 83; Plants - 32; Viruses - 0; Other Eukaryotes - 930 (source: NCBI BLink).  protein_id AT3G57220.1p  transcript_id AT3G57220.1  protein_id AT3G57220.1p  transcript_id AT3G57220.1  
At3g57230	chr3:021177710	0.0	W/21177710-21177891,21179095-21179173,21179567-21179628,21179988-21180087,21180181-21180222,21180312-21180395,21180498-21180671	AT3G57230.1  CDS  gene_syn AGAMOUS-LIKE 16, AGL16  gene AGL16  function MADS-box transcription factor. Expressed in leaf, root and stem, with higher RNA accumulation in guard cells and trichomes.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|11115127|ISS  go_process stomatal lineage progression|GO:0010440|17704216|IMP  go_function transcription factor activity|GO:0003700|11115127|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product AGL16 (AGAMOUS-LIKE 16); transcription factor  note AGAMOUS-LIKE 16 (AGL16); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, stomatal lineage progression; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGL21; transcription factor (TAIR:AT4G37940.1); Has 5285 Blast hits to 5282 proteins in 701 species: Archae - 0; Bacteria - 7; Metazoa - 574; Fungi - 214; Plants - 4395; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT3G57230.1p  transcript_id AT3G57230.1  protein_id AT3G57230.1p  transcript_id AT3G57230.1  
At3g57230	chr3:021177710	0.0	W/21177710-21177891,21179095-21179173,21179929-21180087,21180181-21180222,21180312-21180395,21180498-21180671	AT3G57230.2  CDS  gene_syn AGAMOUS-LIKE 16, AGL16  gene AGL16  function MADS-box transcription factor. Expressed in leaf, root and stem, with higher RNA accumulation in guard cells and trichomes.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|11115127|ISS  go_process stomatal lineage progression|GO:0010440|17704216|IMP  go_function transcription factor activity|GO:0003700|11115127|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product AGL16 (AGAMOUS-LIKE 16); transcription factor  note AGAMOUS-LIKE 16 (AGL16); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, stomatal lineage progression; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGL21; transcription factor (TAIR:AT4G37940.1); Has 5186 Blast hits to 5183 proteins in 694 species: Archae - 0; Bacteria - 4; Metazoa - 566; Fungi - 210; Plants - 4338; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT3G57230.2p  transcript_id AT3G57230.2  protein_id AT3G57230.2p  transcript_id AT3G57230.2  
At3g57240	chr3:021182952	0.0	C/21182952-21183045,21181916-21182847	AT3G57240.1  CDS  gene_syn BETA-1,3-GLUCANASE 3, BG3  gene BG3  function encodes a member of glycosyl hydrolase family 17  go_component cell wall|GO:0005618|15593128|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to bacterium|GO:0009617|1824335|IEP  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function cellulase activity|GO:0008810|1824335|TAS  product BG3 (BETA-1,3-GLUCANASE 3); cellulase/ hydrolase, hydrolyzing O-glycosyl compounds  note BETA-1,3-GLUCANASE 3 (BG3); FUNCTIONS IN: cellulase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to bacterium; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGL2 (BETA-1,3-GLUCANASE 2); cellulase/ glucan 1,3-beta-glucosidase/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT3G57260.1); Has 1391 Blast hits to 1382 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 1378; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G57240.1p  transcript_id AT3G57240.1  protein_id AT3G57240.1p  transcript_id AT3G57240.1  
At3g57250	chr3:021186719	0.0	W/21186719-21186832,21186937-21187251	AT3G57250.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product emsy N terminus domain-containing protein / ENT domain-containing protein  note emsy N terminus domain-containing protein / ENT domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo; EXPRESSED DURING: C globular stage; Has 2 Blast hits to 2 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G57250.1p  transcript_id AT3G57250.1  protein_id AT3G57250.1p  transcript_id AT3G57250.1  
At3g57260	chr3:021189738	0.0	C/21189738-21189822,21188709-21189643	AT3G57260.1  CDS  gene_syn BETA-1,3-GLUCANASE, BETA-1,3-GLUCANASE 2, BG2, BGL2, PATHOGENESIS-RELATED PROTEIN 2, PR-2, PR2  gene BGL2  function beta 1,3-glucanase  go_component cell wall|GO:0005618|15593128|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cold|GO:0009409|16574749|IEP  go_process systemic acquired resistance|GO:0009627|1392589|IEP  go_process systemic acquired resistance|GO:0009627|17419843|IEP  go_process systemic acquired resistance|GO:0009627||NAS  go_function glucan 1,3-beta-glucosidase activity|GO:0004338|1392589|ISS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function cellulase activity|GO:0008810|9881167|TAS  product BGL2 (BETA-1,3-GLUCANASE 2); cellulase/ glucan 1,3-beta-glucosidase/ hydrolase, hydrolyzing O-glycosyl compounds  note BETA-1,3-GLUCANASE 2 (BGL2); FUNCTIONS IN: glucan 1,3-beta-glucosidase activity, cellulase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: systemic acquired resistance, response to cold; LOCATED IN: apoplast, cell wall, vacuole; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BG3 (BETA-1,3-GLUCANASE 3); cellulase/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT3G57240.1); Has 1464 Blast hits to 1455 proteins in 147 species: Archae - 0; Bacteria - 18; Metazoa - 0; Fungi - 51; Plants - 1374; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT3G57260.1p  transcript_id AT3G57260.1  protein_id AT3G57260.1p  transcript_id AT3G57260.1  
At3g57270	chr3:021193049	0.0	C/21193049-21193118,21192146-21192531,21191336-21191902	AT3G57270.1  CDS  gene_syn BETA-1,3-GLUCANASE 1, BG1  gene BG1  function encodes a member of glycosyl hydrolase family 17  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BG1 (BETA-1,3-GLUCANASE 1); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA-1,3-GLUCANASE 1 (BG1); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGL2 (BETA-1,3-GLUCANASE 2); cellulase/ glucan 1,3-beta-glucosidase/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT3G57260.1); Has 1440 Blast hits to 1430 proteins in 140 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 46; Plants - 1382; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT3G57270.1p  transcript_id AT3G57270.1  protein_id AT3G57270.1p  transcript_id AT3G57270.1  
At3g57280	chr3:021193960	0.0	W/21193960-21194058,21194432-21194660,21194767-21194934,21195195-21195241,21195322-21195362,21195451-21195547	AT3G57280.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast inner membrane|GO:0009706|12766230|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0136, Transmembrane (InterPro:IPR005349); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20510.1); Has 95 Blast hits to 95 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 21; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G57280.1p  transcript_id AT3G57280.1  protein_id AT3G57280.1p  transcript_id AT3G57280.1  
At3g57290	chr3:021198854	0.0	C/21198854-21199073,21198601-21198755,21198265-21198492,21198054-21198175,21197514-21197733,21197292-21197434,21196958-21197095,21196786-21196885	AT3G57290.1  CDS  gene_syn ATEIF3E-1, ATINT6, EIF3E, EUKARYOTIC TRANSLATION INITIATION FACTOR 3E, INT-6, INT6, TIF3E1  gene EIF3E  function Encodes a protein that is found in not only the eif3 complex but also in association with subunits of the COP9 signalosome. eIF3e appears to be subjected to proteasome-dependent degradation that requires the PCI domain of eIF3e. The level of eIF3e present in cells appears to affect the rate of translation.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component nucleus|GO:0005634|11029466|IDA  go_component cytoplasm|GO:0005737|11029466|IDA  go_component eukaryotic translation initiation factor 3 complex|GO:0005852|11029466|IPI  go_component signalosome|GO:0008180|11029466|IPI  go_process transcription initiation|GO:0006352|11029466|TAS  go_process translation|GO:0006412|18067529|IMP  go_process photomorphogenesis|GO:0009640|18067529|IMP  go_process flower development|GO:0009908|18067529|IMP  go_function translation initiation factor activity|GO:0003743||ISS  product EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E); translation initiation factor  note EUKARYOTIC TRANSLATION INITIATION FACTOR 3E (EIF3E); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: flower development, response to salt stress, translation, photomorphogenesis, transcription initiation; LOCATED IN: signalosome, eukaryotic translation initiation factor 3 complex, nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor 3, subunit 6, eukaryotic (InterPro:IPR016650), Proteasome component region PCI (InterPro:IPR000717); Has 468 Blast hits to 466 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 230; Fungi - 65; Plants - 103; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT3G57290.1p  transcript_id AT3G57290.1  protein_id AT3G57290.1p  transcript_id AT3G57290.1  
At3g57300	chr3:021199612	0.0	W/21199612-21199671,21199876-21199963,21200068-21200446,21200568-21201000,21201132-21201332,21201563-21201673,21201951-21202378,21202457-21202565,21202691-21202771,21202844-21203016,21203379-21203504,21203646-21203807,21203903-21203960,21204395-21204625,21204787-21204933,21205033-21205593,21205692-21205952,21206038-21206145,21206262-21206356,21206440-21206596,21206780-21206989,21207069-21207218,21207441-21207635	AT3G57300.1  CDS  gene_syn ATINO80, INO80, INO80 ORTHOLOG  gene INO80  function Encodes the Arabidopsis INO80 ortholog of the SWI/SNF ATPase family. Functions as a positive regulator of DNA homologous recombination (HR). In INO80 mutants, the HR frequency is reduced to 15% of that in the wild-type. Mutation in INO80 does not affect sensitivity to genotoxic agents and efficiency of T-DNA integration. INO80 was also shown to regulate a subset of the Arabidopsis transcriptome.  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process somatic cell DNA recombination|GO:0016444|15525519|IMP  go_process regulation of transcription|GO:0045449|15525519|IMP  go_process positive regulation of DNA repair|GO:0045739|15525519|IMP  go_function DNA binding|GO:0003677||ISS  go_function ATP binding|GO:0005524||ISS  product INO80 (INO80 ORTHOLOG); ATP binding / DNA binding / helicase/ nucleic acid binding  note INO80 ORTHOLOG (INO80); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: somatic cell DNA recombination, regulation of transcription, positive regulation of DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1); ATP binding / DNA binding / helicase/ nucleic acid binding (TAIR:AT3G12810.1); Has 17921 Blast hits to 10726 proteins in 984 species: Archae - 106; Bacteria - 3992; Metazoa - 5011; Fungi - 3663; Plants - 1153; Viruses - 175; Other Eukaryotes - 3821 (source: NCBI BLink).  protein_id AT3G57300.1p  transcript_id AT3G57300.1  protein_id AT3G57300.1p  transcript_id AT3G57300.1  
At3g57310	chr3:021208200	0.0	C/21208200-21208511	AT3G57310.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT2G14846.1); Has 196 Blast hits to 194 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 196; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G57310.1p  transcript_id AT3G57310.1  protein_id AT3G57310.1p  transcript_id AT3G57310.1  
At3g57320	chr3:021210082	0.0	W/21210082-21210147,21210281-21210326,21210408-21210499,21210539-21210571	AT3G57320.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 8 Blast hits to 8 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G57320.2p  transcript_id AT3G57320.2  protein_id AT3G57320.2p  transcript_id AT3G57320.2  
At3g57320	chr3:021210082	0.0	W/21210082-21210147,21210281-21210326,21210408-21210499,21210568-21210672	AT3G57320.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 17 Blast hits to 17 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G57320.1p  transcript_id AT3G57320.1  protein_id AT3G57320.1p  transcript_id AT3G57320.1  
At3g57330	chr3:021216205	0.0	C/21216205-21216375,21214916-21214970,21212902-21214826,21212669-21212824,21212405-21212576,21212022-21212320,21211655-21211954	AT3G57330.1  CDS  gene_syn ACA11, autoinhibited Ca2+-ATPase 11  gene ACA11  go_component vacuole|GO:0005773|14760709|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process ATP biosynthetic process|GO:0006754||IEA  go_process cation transport|GO:0006812||IEA  go_process calcium ion transport|GO:0006816||IEA  go_process metabolic process|GO:0008152||IEA  go_function calcium-transporting ATPase activity|GO:0005388|12805592|ISS  go_function calcium-transporting ATPase activity|GO:0005388||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  product ACA11 (autoinhibited Ca2+-ATPase 11); calcium-transporting ATPase/ calmodulin binding  note autoinhibited Ca2+-ATPase 11 (ACA11); FUNCTIONS IN: calmodulin binding, calcium-transporting ATPase activity; INVOLVED IN: cation transport, calcium ion transport, metabolic process, ATP biosynthetic process; LOCATED IN: chloroplast, plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, calcium-transporting, PMCA-type (InterPro:IPR006408), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4); calcium-transporting ATPase/ calmodulin binding (TAIR:AT2G41560.1); Has 25242 Blast hits to 19809 proteins in 1858 species: Archae - 502; Bacteria - 15238; Metazoa - 3407; Fungi - 1728; Plants - 1099; Viruses - 3; Other Eukaryotes - 3265 (source: NCBI BLink).  protein_id AT3G57330.1p  transcript_id AT3G57330.1  protein_id AT3G57330.1p  transcript_id AT3G57330.1  
At3g57340	chr3:021219175	0.0	W/21219175-21220278	AT3G57340.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Protein of unknown function DUF1977, DnaJ-like (InterPro:IPR015399), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT5G05750.1); Has 16943 Blast hits to 16932 proteins in 1979 species: Archae - 123; Bacteria - 5258; Metazoa - 3696; Fungi - 1547; Plants - 1286; Viruses - 20; Other Eukaryotes - 5013 (source: NCBI BLink).  protein_id AT3G57340.1p  transcript_id AT3G57340.1  protein_id AT3G57340.1p  transcript_id AT3G57340.1  
At3g57340	chr3:021219175	0.0	W/21219175-21220278	AT3G57340.2  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Protein of unknown function DUF1977, DnaJ-like (InterPro:IPR015399), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT5G05750.1); Has 16943 Blast hits to 16932 proteins in 1979 species: Archae - 123; Bacteria - 5258; Metazoa - 3696; Fungi - 1547; Plants - 1286; Viruses - 20; Other Eukaryotes - 5013 (source: NCBI BLink).  protein_id AT3G57340.2p  transcript_id AT3G57340.2  protein_id AT3G57340.2p  transcript_id AT3G57340.2  
At3g57350	chr3:021225163	0.0	C/21225163-21225305,21225006-21225095,21224738-21224804,21224549-21224608,21224373-21224462,21223739-21223996,21223386-21223481,21223158-21223292,21222907-21222960,21222703-21222786,21222476-21222532,21221500-21222402,21221158-21221339,21220763-21221093,21220606-21220683	AT3G57350.1  CDS  go_component nuclear pore|GO:0005643||IEA  go_process transport|GO:0006810||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; LOCATED IN: nuclear pore; CONTAINS InterPro DOMAIN/s: Nucleoporin interacting component Nup93/Nic96 (InterPro:IPR007231); BEST Arabidopsis thaliana protein match is: nucleoporin interacting component family protein (TAIR:AT2G41620.1); Has 234 Blast hits to 230 proteins in 99 species: Archae - 0; Bacteria - 3; Metazoa - 124; Fungi - 76; Plants - 29; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G57350.1p  transcript_id AT3G57350.1  protein_id AT3G57350.1p  transcript_id AT3G57350.1  
At3g57360	chr3:021225571	0.0	W/21225571-21225683,21225781-21225912,21226015-21226398,21226486-21226621	AT3G57360.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02370.1); Has 53 Blast hits to 53 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 37; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G57360.1p  transcript_id AT3G57360.1  protein_id AT3G57360.1p  transcript_id AT3G57360.1  
At3g57370	chr3:021227967	0.0	C/21227967-21228475,21227860-21227884,21227646-21227769,21227429-21227550,21227260-21227348,21227068-21227147,21226839-21226972	AT3G57370.1  CDS  go_component nucleus|GO:0005634||IEA  go_component transcription factor complex|GO:0005667||IEA  go_process transcription initiation|GO:0006352||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process translational initiation|GO:0006413||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function transcription regulator activity|GO:0030528||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||ISS  product transcription factor IIB (TFIIB) family protein  note transcription factor IIB (TFIIB) family protein; FUNCTIONS IN: protein binding, RNA polymerase II transcription factor activity, transcription regulator activity, zinc ion binding, translation initiation factor activity; INVOLVED IN: translational initiation, regulation of transcription, DNA-dependent, transcription initiation; LOCATED IN: transcription factor complex, nucleus; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2) (TAIR:AT3G10330.1); Has 977 Blast hits to 976 proteins in 232 species: Archae - 292; Bacteria - 0; Metazoa - 180; Fungi - 163; Plants - 82; Viruses - 3; Other Eukaryotes - 257 (source: NCBI BLink).  protein_id AT3G57370.1p  transcript_id AT3G57370.1  protein_id AT3G57370.1p  transcript_id AT3G57370.1  
At3g57380	chr3:021230002	0.0	W/21230002-21230200,21230285-21230362,21230435-21231672	AT3G57380.1  CDS  go_function transferase activity, transferring glycosyl groups|GO:0016757||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product transferase, transferring glycosyl groups  note transferase, transferring glycosyl groups; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, flower, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Glycosyltransferase AER61, uncharacterized (InterPro:IPR007657); BEST Arabidopsis thaliana protein match is: transferase, transferring glycosyl groups (TAIR:AT2G41640.1); Has 457 Blast hits to 456 proteins in 79 species: Archae - 0; Bacteria - 21; Metazoa - 151; Fungi - 8; Plants - 242; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT3G57380.1p  transcript_id AT3G57380.1  protein_id AT3G57380.1p  transcript_id AT3G57380.1  
At3g57390	chr3:021233910	0.0	W/21233910-21234091,21234612-21234720,21234814-21234869,21234958-21235057,21235142-21235183,21235284-21235325,21235408-21235556,21235645-21235735	AT3G57390.1  CDS  gene_syn AGAMOUS-LIKE 18, AGL18  gene AGL18  function encodes a MADS-box containing protein likely to be a transcription factor that is expressed in endosperm and developing gametophytes. The protein sequence is most similar to that of AGL15, which is expressed in developing embryos.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|11115127|ISS  go_function transcription factor activity|GO:0003700|11115127|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL18; transcription factor  note AGL18; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGL15 (AGAMOUS-LIKE 15); DNA binding / transcription factor (TAIR:AT5G13790.1); Has 4878 Blast hits to 4874 proteins in 653 species: Archae - 0; Bacteria - 0; Metazoa - 557; Fungi - 215; Plants - 4046; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT3G57390.1p  transcript_id AT3G57390.1  protein_id AT3G57390.1p  transcript_id AT3G57390.1  
At3g57390	chr3:021234613	0.0	W/21234613-21234720,21234814-21234869,21234958-21235057,21235142-21235183,21235284-21235325,21235408-21235556,21235645-21235735	AT3G57390.2  CDS  gene_syn AGAMOUS-LIKE 18, AGL18  gene AGL18  function encodes a MADS-box containing protein likely to be a transcription factor that is expressed in endosperm and developing gametophytes. The protein sequence is most similar to that of AGL15, which is expressed in developing embryos.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|11115127|ISS  go_function transcription factor activity|GO:0003700|11115127|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL18; transcription factor  note AGL18; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGL15 (AGAMOUS-LIKE 15); DNA binding / transcription factor (TAIR:AT5G13790.1); Has 1349 Blast hits to 1347 proteins in 265 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 5; Plants - 1335; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G57390.2p  transcript_id AT3G57390.2  protein_id AT3G57390.2p  transcript_id AT3G57390.2  
At3g57400	chr3:021238547	0.0	W/21238547-21239971	AT3G57400.1  CDS  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52500.1); Has 23 Blast hits to 23 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G57400.1p  transcript_id AT3G57400.1  protein_id AT3G57400.1p  transcript_id AT3G57400.1  
At3g57410	chr3:021249754	0.0	C/21249754-21249809,21249491-21249590,21249248-21249316,21248928-21249164,21248663-21248840,21248390-21248522,21248093-21248252,21247866-21248016,21247675-21247775,21247429-21247587,21246917-21246985,21246775-21246843,21246554-21246691,21246245-21246373,21245938-21246085,21245803-21245813,21245588-21245728,21245376-21245501,21244926-21244988,21244624-21244725,21244160-21244376,21243821-21244047,21243615-21243728	AT3G57410.1  CDS  gene_syn ATVLN3, F28O9.1, VILLIN 3, VLN3  gene VLN3  function Encodes a protein with high homology to animal villin.  go_process cytoskeleton organization|GO:0007010||IEA  go_function actin binding|GO:0003779||IEA  go_component cellular_component|GO:0005575||ND  go_process cytoskeleton organization|GO:0007010||ISS  go_function actin binding|GO:0003779||ISS  product VLN3 (VILLIN 3); actin binding  note VILLIN 3 (VLN3); FUNCTIONS IN: actin binding; INVOLVED IN: cytoskeleton organization; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gelsolin (InterPro:IPR007122), Villin headpiece (InterPro:IPR003128), Gelsolin region (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: VLN2 (VILLIN 2); actin binding (TAIR:AT2G41740.1); Has 7199 Blast hits to 2529 proteins in 305 species: Archae - 0; Bacteria - 444; Metazoa - 2309; Fungi - 284; Plants - 190; Viruses - 25; Other Eukaryotes - 3947 (source: NCBI BLink).  protein_id AT3G57410.1p  transcript_id AT3G57410.1  protein_id AT3G57410.1p  transcript_id AT3G57410.1  
At3g57420	chr3:021253425	0.0	C/21253425-21255115,21253206-21253332,21252605-21253084	AT3G57420.1  CDS  go_component cell wall|GO:0005618|15593128|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41770.1); Has 155 Blast hits to 155 proteins in 20 species: Archae - 2; Bacteria - 7; Metazoa - 47; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT3G57420.1p  transcript_id AT3G57420.1  protein_id AT3G57420.1p  transcript_id AT3G57420.1  
At3g57430	chr3:021255731	0.0	C/21255731-21258403	AT3G57430.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: CRR22 (CHLORORESPIRATORY REDUCTION22); endonuclease (TAIR:AT1G11290.1); Has 16711 Blast hits to 4890 proteins in 148 species: Archae - 0; Bacteria - 6; Metazoa - 53; Fungi - 55; Plants - 16329; Viruses - 0; Other Eukaryotes - 268 (source: NCBI BLink).  protein_id AT3G57430.1p  transcript_id AT3G57430.1  protein_id AT3G57430.1p  transcript_id AT3G57430.1  
At3g57440	chr3:021258732	0.0	W/21258732-21258820,21258933-21259131,21259536-21259897,21260079-21260145,21260241-21260249	AT3G57440.1  CDS  product unknown protein  note unknown protein; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 17 Blast hits to 17 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G57440.1p  transcript_id AT3G57440.1  protein_id AT3G57440.1p  transcript_id AT3G57440.1  
At3g57450	chr3:021262028	0.0	W/21262028-21262318	AT3G57450.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 37 Blast hits to 37 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G57450.1p  transcript_id AT3G57450.1  protein_id AT3G57450.1p  transcript_id AT3G57450.1  
At3g57460	chr3:021265690	0.0	C/21265690-21265797,21265349-21265445,21265091-21265183,21264871-21264956,21264678-21264764,21264272-21264361,21264091-21264187,21263910-21263971,21263721-21263825,21263086-21263331	AT3G57460.1  CDS  go_process proteolysis|GO:0006508||IEA  go_function catalytic activity|GO:0003824||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  product catalytic/ metal ion binding / metalloendopeptidase/ zinc ion binding  note catalytic/ metal ion binding / metalloendopeptidase/ zinc ion binding; FUNCTIONS IN: metalloendopeptidase activity, zinc ion binding, catalytic activity, metal ion binding; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M16, C-terminal (InterPro:IPR007863), Metalloenzyme, LuxS/M16 peptidase-like, metal-binding (InterPro:IPR011249); BEST Arabidopsis thaliana protein match is: peptidase M16 family protein / insulinase family protein (TAIR:AT3G57470.2); Has 1064 Blast hits to 649 proteins in 189 species: Archae - 0; Bacteria - 284; Metazoa - 403; Fungi - 152; Plants - 137; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT3G57460.1p  transcript_id AT3G57460.1  protein_id AT3G57460.1p  transcript_id AT3G57460.1  
At3g57470	chr3:021275338	0.0	C/21275338-21275400,21275125-21275216,21274959-21275032,21274836-21274879,21274618-21274669,21274360-21274482,21274137-21274249,21273862-21274024,21273391-21273483,21273195-21273280,21273018-21273104,21272669-21272772,21272289-21272391,21272052-21272147,21271765-21271954,21271360-21271421,21271171-21271275,21270808-21271009,21270512-21270720,21270238-21270362,21270111-21270162,21269936-21270022,21269733-21269855,21269428-21269655	AT3G57470.2  CDS  go_process proteolysis|GO:0006508||IEA  go_function catalytic activity|GO:0003824||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_process proteolysis|GO:0006508||ISS  go_function metalloendopeptidase activity|GO:0004222||ISS  product peptidase M16 family protein / insulinase family protein  note peptidase M16 family protein / insulinase family protein; FUNCTIONS IN: metalloendopeptidase activity, zinc ion binding, catalytic activity, metal ion binding; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M16, C-terminal (InterPro:IPR007863), Peptidase M16, N-terminal (InterPro:IPR011765), Metalloenzyme, LuxS/M16 peptidase-like, metal-binding (InterPro:IPR011249), Peptidase M16, core (InterPro:IPR011237); BEST Arabidopsis thaliana protein match is: peptidase M16 family protein / insulinase family protein (TAIR:AT2G41790.1); Has 1962 Blast hits to 1906 proteins in 499 species: Archae - 0; Bacteria - 815; Metazoa - 327; Fungi - 126; Plants - 77; Viruses - 0; Other Eukaryotes - 617 (source: NCBI BLink).  protein_id AT3G57470.2p  transcript_id AT3G57470.2  protein_id AT3G57470.2p  transcript_id AT3G57470.2  
At3g57470	chr3:021275338	0.0	C/21275338-21275400,21275125-21275216,21274959-21275032,21274836-21274879,21274618-21274669,21274360-21274482,21274137-21274249,21273862-21274024,21273391-21273483,21273195-21273280,21273018-21273104,21272669-21272772,21272289-21272391,21272052-21272147,21271765-21271954,21271360-21271421,21271171-21271275,21270808-21271009,21270512-21270720,21270238-21270362,21270111-21270162,21269936-21270022,21269828-21269833	AT3G57470.1  CDS  go_process proteolysis|GO:0006508||IEA  go_function catalytic activity|GO:0003824||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_process proteolysis|GO:0006508||ISS  go_function metalloendopeptidase activity|GO:0004222||ISS  product peptidase M16 family protein / insulinase family protein  note peptidase M16 family protein / insulinase family protein; FUNCTIONS IN: metalloendopeptidase activity, zinc ion binding, catalytic activity, metal ion binding; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M16, C-terminal (InterPro:IPR007863), Peptidase M16, N-terminal (InterPro:IPR011765), Metalloenzyme, LuxS/M16 peptidase-like, metal-binding (InterPro:IPR011249), Peptidase M16, core (InterPro:IPR011237); BEST Arabidopsis thaliana protein match is: peptidase M16 family protein / insulinase family protein (TAIR:AT2G41790.1); Has 1916 Blast hits to 1871 proteins in 500 species: Archae - 0; Bacteria - 813; Metazoa - 320; Fungi - 124; Plants - 73; Viruses - 0; Other Eukaryotes - 586 (source: NCBI BLink).  protein_id AT3G57470.1p  transcript_id AT3G57470.1  protein_id AT3G57470.1p  transcript_id AT3G57470.1  
At3g57480	chr3:021279021	0.0	C/21279021-21279119,21278083-21278733	AT3G57480.1  CDS  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type, AN1-like) family protein  note zinc finger (C2H2 type, AN1-like) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type, AN1-like) family protein (TAIR:AT2G41835.1); Has 368 Blast hits to 368 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 197; Fungi - 75; Plants - 47; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT3G57480.1p  transcript_id AT3G57480.1  protein_id AT3G57480.1p  transcript_id AT3G57480.1  
At3g57490	chr3:021280219	0.0	C/21280219-21280887,21279824-21279985	AT3G57490.1  CDS  go_component membrane|GO:0016020|17432890|IDA  go_component intracellular|GO:0005622||ISS  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S2 (RPS2D)  note 40S ribosomal protein S2 (RPS2D); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome, intracellular, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5, eukaryotic/archaeal (InterPro:IPR005711), Double-stranded RNA-binding-like (InterPro:IPR014720), Ribosomal protein S5, C-terminal (InterPro:IPR005324), Ribosomal protein S5 (InterPro:IPR000851), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721), Ribosomal protein S5, N-terminal, conserved site (InterPro:IPR018192), Ribosomal protein S5, N-terminal (InterPro:IPR013810); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S2 (RPS2B) (TAIR:AT1G59359.1); Has 6002 Blast hits to 5992 proteins in 1677 species: Archae - 183; Bacteria - 2906; Metazoa - 580; Fungi - 160; Plants - 108; Viruses - 0; Other Eukaryotes - 2065 (source: NCBI BLink).  protein_id AT3G57490.1p  transcript_id AT3G57490.1  protein_id AT3G57490.1p  transcript_id AT3G57490.1  
At3g57500	chr3:021281980	0.0	W/21281980-21282351	AT3G57500.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 23 Blast hits to 23 proteins in 7 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G57500.1p  transcript_id AT3G57500.1  protein_id AT3G57500.1p  transcript_id AT3G57500.1  
At3g57510	chr3:021285588	0.0	C/21285588-21285842,21285267-21285398,21285012-21285182,21284846-21284866,21284526-21284733,21284310-21284391,21284039-21284147,21283835-21283948,21283546-21283749	AT3G57510.1  CDS  gene_syn ADPG1  gene ADPG1  function Encodes ADPG1, a polygalacturonase protein involved in silique and anther dihiscence. Loss of function mutations have reduced seed set, indehiscent fruit and reduced pollen shedding.  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_process cell wall modification during abscission|GO:0009830|19168715|TAS  go_process anther dehiscence|GO:0009901|19168715|IMP  go_process fruit dehiscence|GO:0010047|19168715|IMP  go_function polygalacturonase activity|GO:0004650|19168715|IDA  go_function polygalacturonase activity|GO:0004650||ISS  product ADPG1; polygalacturonase  note ADPG1; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: cell wall modification during abscission, fruit dehiscence, anther dehiscence, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: PGAZAT (POLYGALACTURONASE ABSCISSION ZONE A. THALIANA); polygalacturonase (TAIR:AT2G41850.1); Has 2570 Blast hits to 2560 proteins in 340 species: Archae - 6; Bacteria - 576; Metazoa - 8; Fungi - 999; Plants - 896; Viruses - 2; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT3G57510.1p  transcript_id AT3G57510.1  protein_id AT3G57510.1p  transcript_id AT3G57510.1  
At3g57520	chr3:021292504	0.0	C/21292504-21292694,21292144-21292388,21291957-21292047,21291809-21291857,21291628-21291719,21291419-21291526,21290990-21291112,21290320-21290872,21290172-21290239,21289929-21290063,21289612-21289829,21289429-21289517,21288982-21289341	AT3G57520.1  CDS  gene_syn Arabidopsis thaliana seed imbibition 2, AtSIP2  gene AtSIP2  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product AtSIP2 (Arabidopsis thaliana seed imbibition 2); hydrolase, hydrolyzing O-glycosyl compounds  note Arabidopsis thaliana seed imbibition 2 (AtSIP2); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Raffinose synthase (InterPro:IPR008811); BEST Arabidopsis thaliana protein match is: AtSIP1 (Arabidopsis thaliana seed imbibition 1); hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G55740.1); Has 272 Blast hits to 257 proteins in 79 species: Archae - 9; Bacteria - 35; Metazoa - 0; Fungi - 51; Plants - 171; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G57520.1p  transcript_id AT3G57520.1  protein_id AT3G57520.1p  transcript_id AT3G57520.1  
At3g57520	chr3:021292504	0.0	C/21292504-21292694,21292144-21292388,21291957-21292047,21291809-21291857,21291628-21291719,21291419-21291526,21290990-21291112,21290320-21290872,21290172-21290239,21289929-21290063,21289612-21289829,21289429-21289517,21289299-21289307	AT3G57520.2  CDS  gene_syn Arabidopsis thaliana seed imbibition 2, AtSIP2  gene AtSIP2  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product AtSIP2 (Arabidopsis thaliana seed imbibition 2); hydrolase, hydrolyzing O-glycosyl compounds  note Arabidopsis thaliana seed imbibition 2 (AtSIP2); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Raffinose synthase (InterPro:IPR008811); BEST Arabidopsis thaliana protein match is: AtSIP1 (Arabidopsis thaliana seed imbibition 1); hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G55740.1); Has 265 Blast hits to 254 proteins in 79 species: Archae - 9; Bacteria - 35; Metazoa - 0; Fungi - 51; Plants - 166; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G57520.2p  transcript_id AT3G57520.2  protein_id AT3G57520.2p  transcript_id AT3G57520.2  
At3g57520	chr3:021292504	0.0	C/21292504-21292694,21292144-21292388,21291957-21292047,21291809-21291857,21291628-21291719,21291419-21291526,21290990-21291112,21290320-21290872,21290172-21290239,21289929-21290063,21289725-21289767	AT3G57520.3  CDS  gene_syn Arabidopsis thaliana seed imbibition 2, AtSIP2  gene AtSIP2  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product AtSIP2 (Arabidopsis thaliana seed imbibition 2); hydrolase, hydrolyzing O-glycosyl compounds  note Arabidopsis thaliana seed imbibition 2 (AtSIP2); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Raffinose synthase (InterPro:IPR008811); BEST Arabidopsis thaliana protein match is: AtSIP1 (Arabidopsis thaliana seed imbibition 1); hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G55740.1); Has 262 Blast hits to 251 proteins in 79 species: Archae - 9; Bacteria - 35; Metazoa - 0; Fungi - 51; Plants - 164; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G57520.3p  transcript_id AT3G57520.3  protein_id AT3G57520.3p  transcript_id AT3G57520.3  
At3g57530	chr3:021298824	0.0	C/21298824-21299351,21298456-21298579,21298227-21298370,21297941-21298093,21297740-21297855,21297470-21297637,21297148-21297375,21296898-21297053	AT3G57530.1  CDS  gene_syn ATCPK32, CALCIUM-DEPENDENT PROTEIN KINASE 32, CDPK32, CPK32  gene CPK32  function Calcium-dependent Protein Kinase. ABA signaling component that regulates the ABA-responsive gene expression via ABF4. AtCPK32 has autophosphorylation activity and can phosphorylate ABF4 in vitro  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component nucleus|GO:0005634|16299177|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process response to salt stress|GO:0009651|16299177|IEP  go_process abscisic acid mediated signaling|GO:0009738|16299177|IMP  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  go_function calcium-dependent protein kinase C activity|GO:0004698|16299177|IDA  go_function protein binding|GO:0005515|16299177|IPI  go_function kinase activity|GO:0016301||ISS  product CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32); calcium-dependent protein kinase C/ calmodulin-dependent protein kinase/ kinase/ protein binding  note CALCIUM-DEPENDENT PROTEIN KINASE 32 (CPK32); FUNCTIONS IN: protein binding, calcium-dependent protein kinase C activity, calmodulin-dependent protein kinase activity, kinase activity; INVOLVED IN: response to salt stress, abscisic acid mediated signaling, protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CPK14; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT2G41860.1); Has 89492 Blast hits to 87039 proteins in 2554 species: Archae - 68; Bacteria - 7971; Metazoa - 39416; Fungi - 9976; Plants - 13040; Viruses - 399; Other Eukaryotes - 18622 (source: NCBI BLink).  protein_id AT3G57530.1p  transcript_id AT3G57530.1  protein_id AT3G57530.1p  transcript_id AT3G57530.1  
At3g57540	chr3:021302235	0.0	C/21302235-21302924,21301623-21301823	AT3G57540.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product remorin family protein  note remorin family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal region (InterPro:IPR005516); BEST Arabidopsis thaliana protein match is: remorin family protein (TAIR:AT2G41870.1); Has 265 Blast hits to 265 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 263; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G57540.1p  transcript_id AT3G57540.1  protein_id AT3G57540.1p  transcript_id AT3G57540.1  
At3g57550	chr3:021307269	0.0	W/21307269-21307271,21307350-21307463,21307551-21307627,21307717-21307846,21307937-21308299,21308382-21308503,21308584-21308719,21308801-21308846,21308931-21309027,21309109-21309193	AT3G57550.2  CDS  gene_syn AGK2, GK-2, GUANYLATE KINAS, GUANYLATE KINAS 2, GUANYLATE KINASE  gene AGK2  function guanylate kinase  go_component cellular_component|GO:0005575||ND  go_process nucleotide metabolic process|GO:0009117|10632732|TAS  go_function guanylate kinase activity|GO:0004385|10632732|ISS  product AGK2 (GUANYLATE KINASE); guanylate kinase  note GUANYLATE KINASE (AGK2); FUNCTIONS IN: guanylate kinase activity; INVOLVED IN: nucleotide metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Guanylate kinase (InterPro:IPR008144), Guanylate kinase/L-type calcium channel region (InterPro:IPR008145), Guanylate kinase, sub-group (InterPro:IPR017665); BEST Arabidopsis thaliana protein match is: GK-1 (GUANYLATE KINASE 1); guanylate kinase (TAIR:AT2G41880.1); Has 6781 Blast hits to 6765 proteins in 1550 species: Archae - 0; Bacteria - 2905; Metazoa - 1214; Fungi - 106; Plants - 89; Viruses - 104; Other Eukaryotes - 2363 (source: NCBI BLink).  protein_id AT3G57550.2p  transcript_id AT3G57550.2  protein_id AT3G57550.2p  transcript_id AT3G57550.2  
At3g57550	chr3:021307269	0.0	W/21307269-21307271,21307350-21307463,21307551-21307627,21307717-21307846,21307937-21308299,21308382-21308503,21308584-21308719,21308801-21308846,21308934-21309027,21309109-21309193	AT3G57550.1  CDS  gene_syn AGK2, GK-2, GUANYLATE KINAS, GUANYLATE KINAS 2, GUANYLATE KINASE  gene AGK2  function guanylate kinase  go_component cellular_component|GO:0005575||ND  go_process nucleotide metabolic process|GO:0009117|10632732|TAS  go_function guanylate kinase activity|GO:0004385|10632732|ISS  product AGK2 (GUANYLATE KINASE); guanylate kinase  note GUANYLATE KINASE (AGK2); FUNCTIONS IN: guanylate kinase activity; INVOLVED IN: nucleotide metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Guanylate kinase (InterPro:IPR008144), Guanylate kinase/L-type calcium channel region (InterPro:IPR008145), Guanylate kinase, sub-group (InterPro:IPR017665); BEST Arabidopsis thaliana protein match is: GK-1 (GUANYLATE KINASE 1); guanylate kinase (TAIR:AT2G41880.1); Has 6783 Blast hits to 6767 proteins in 1550 species: Archae - 0; Bacteria - 2905; Metazoa - 1214; Fungi - 106; Plants - 89; Viruses - 104; Other Eukaryotes - 2365 (source: NCBI BLink).  protein_id AT3G57550.1p  transcript_id AT3G57550.1  protein_id AT3G57550.1p  transcript_id AT3G57550.1  
At3g57560	chr3:021311164	0.0	C/21311164-21312207	AT3G57560.1  CDS  function encodes a N-acetylglutamate kinase, involved in arginine biosynthesis  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|16377628|IDA  go_process arginine biosynthetic process|GO:0006526||ISS  go_process arginine biosynthetic process via ornithine|GO:0042450|16377628|TAS  go_function acetylglutamate kinase activity|GO:0003991|16377628|IDA  go_function acetylglutamate kinase activity|GO:0003991||ISS  product aspartate/glutamate/uridylate kinase family protein  note aspartate/glutamate/uridylate kinase family protein; FUNCTIONS IN: acetylglutamate kinase activity; INVOLVED IN: arginine biosynthetic process via ornithine, arginine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: N-acetylglutamate kinase (InterPro:IPR011148), Glutamate 5-kinase (InterPro:IPR001057), Aspartate/glutamate/uridylate kinase (InterPro:IPR001048), Acetylglutamate kinase (InterPro:IPR004662); Has 6523 Blast hits to 6523 proteins in 1275 species: Archae - 189; Bacteria - 3497; Metazoa - 5; Fungi - 93; Plants - 75; Viruses - 0; Other Eukaryotes - 2664 (source: NCBI BLink).  protein_id AT3G57560.1p  transcript_id AT3G57560.1  protein_id AT3G57560.1p  transcript_id AT3G57560.1  
At3g57570	chr3:021312598	0.0	W/21312598-21312748,21312846-21312946,21313062-21313272,21313362-21313443,21313577-21313859,21313968-21314070,21314169-21314305,21314966-21315031,21315296-21315498,21315626-21315739,21315855-21315943,21316300-21316447,21316699-21316748,21316949-21317064,21317406-21317569,21317677-21317861,21318059-21318116,21318199-21318271,21318617-21318718,21318838-21318931,21319021-21319146,21319229-21319455,21319547-21319687,21319923-21320105	AT3G57570.1  CDS  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 29 Blast hits to 25 proteins in 12 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G57570.1p  transcript_id AT3G57570.1  protein_id AT3G57570.1p  transcript_id AT3G57570.1  
At3g57580	chr3:021320800	0.0	C/21320800-21322026	AT3G57580.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57590.1); Has 751 Blast hits to 714 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 749; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G57580.1p  transcript_id AT3G57580.1  protein_id AT3G57580.1p  transcript_id AT3G57580.1  
At3g57586	chr3:021322564	0.0	W/21322564-21329357	AT3G57586.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 7.8e-42 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At3g57590	chr3:021330182	0.0	C/21330182-21331396	AT3G57590.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G57580.1); Has 891 Blast hits to 856 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 889; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G57590.1p  transcript_id AT3G57590.1  protein_id AT3G57590.1p  transcript_id AT3G57590.1  
At3g57600	chr3:021332841	0.0	W/21332841-21333674	AT3G57600.1  CDS  function encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT5G18450.1); Has 3780 Blast hits to 3681 proteins in 201 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 3763; Viruses - 2; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT3G57600.1p  transcript_id AT3G57600.1  protein_id AT3G57600.1p  transcript_id AT3G57600.1  
At3g57610	chr3:021336307	0.0	C/21336307-21336603,21335412-21336104,21334925-21335236,21334519-21334689	AT3G57610.1  CDS  gene_syn ADENYLOSUCCINATE SYNTHASE, ADSS, ATPURA  gene ADSS  function encoding adenylosuccinate synthetase (AdSS), the enzyme involved in the first step of the formation of the purine nucleotide AMP (conversion of IMP to adenylo-succinate)  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process AMP biosynthetic process|GO:0006167|8790347|IGI  go_process purine ribonucleotide biosynthetic process|GO:0009152||ISS  go_function adenylosuccinate synthase activity|GO:0004019|8790347|IGI  go_function adenylosuccinate synthase activity|GO:0004019||ISS  product ADSS (ADENYLOSUCCINATE SYNTHASE); adenylosuccinate synthase  note ADENYLOSUCCINATE SYNTHASE (ADSS); FUNCTIONS IN: adenylosuccinate synthase activity; INVOLVED IN: response to cadmium ion, purine ribonucleotide biosynthetic process, AMP biosynthetic process; LOCATED IN: apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Adenylosuccinate synthase, active site (InterPro:IPR018220), Adenylosuccinate synthetase (InterPro:IPR001114); Has 7785 Blast hits to 7780 proteins in 1521 species: Archae - 141; Bacteria - 3107; Metazoa - 185; Fungi - 92; Plants - 47; Viruses - 15; Other Eukaryotes - 4198 (source: NCBI BLink).  protein_id AT3G57610.1p  transcript_id AT3G57610.1  protein_id AT3G57610.1p  transcript_id AT3G57610.1  
At3g57620	chr3:021337564	0.0	W/21337564-21339207	AT3G57620.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glyoxal oxidase-related  note glyoxal oxidase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Galactose oxidase, beta-propeller (InterPro:IPR015916), Immunoglobulin-like fold (InterPro:IPR013783), Immunoglobulin E-set (InterPro:IPR014756), Glyoxal oxidase, N-terminal (InterPro:IPR009880), Region of unknown function DUF1929 (InterPro:IPR015202); BEST Arabidopsis thaliana protein match is: glyoxal oxidase-related (TAIR:AT1G14430.1); Has 600 Blast hits to 587 proteins in 117 species: Archae - 0; Bacteria - 256; Metazoa - 2; Fungi - 170; Plants - 155; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT3G57620.1p  transcript_id AT3G57620.1  protein_id AT3G57620.1p  transcript_id AT3G57620.1  
At3g57630	chr3:021342739	0.0	C/21342739-21343080,21342567-21342660,21342282-21342462,21341936-21342191,21341612-21341827,21341427-21341513,21341187-21341321,21340989-21341102,21340643-21340890,21340467-21340547,21340124-21340355,21339917-21340015,21339543-21339833	AT3G57630.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_function catalytic activity|GO:0003824||ISS  product exostosin family protein  note exostosin family protein; FUNCTIONS IN: catalytic activity; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EGF, extracellular (InterPro:IPR013111), Exostosin-like (InterPro:IPR004263), EGF (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: F8H (FRA8 HOMOLOG); catalytic (TAIR:AT5G22940.1); Has 2382 Blast hits to 1704 proteins in 100 species: Archae - 0; Bacteria - 2; Metazoa - 1514; Fungi - 10; Plants - 511; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink).  protein_id AT3G57630.2p  transcript_id AT3G57630.2  protein_id AT3G57630.2p  transcript_id AT3G57630.2  
At3g57630	chr3:021342739	0.0	C/21342739-21343080,21342567-21342660,21342282-21342468,21341936-21342191,21341612-21341827,21341427-21341513,21341187-21341321,21340989-21341102,21340643-21340890,21340467-21340547,21340124-21340355,21339917-21340015,21339543-21339833	AT3G57630.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_function catalytic activity|GO:0003824||ISS  product exostosin family protein  note exostosin family protein; FUNCTIONS IN: catalytic activity; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EGF, extracellular (InterPro:IPR013111), Exostosin-like (InterPro:IPR004263), EGF (InterPro:IPR006210), EGF-like, type 3 (InterPro:IPR000742), EGF-like region, conserved site (InterPro:IPR013032); BEST Arabidopsis thaliana protein match is: F8H (FRA8 HOMOLOG); catalytic (TAIR:AT5G22940.1); Has 3317 Blast hits to 2031 proteins in 107 species: Archae - 0; Bacteria - 2; Metazoa - 2325; Fungi - 10; Plants - 514; Viruses - 0; Other Eukaryotes - 466 (source: NCBI BLink).  protein_id AT3G57630.1p  transcript_id AT3G57630.1  protein_id AT3G57630.1p  transcript_id AT3G57630.1  
At3g57640	chr3:021344921	0.0	C/21344921-21345991	AT3G57640.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function ATP binding|GO:0005524||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G65250.1); Has 11091 Blast hits to 10958 proteins in 304 species: Archae - 0; Bacteria - 27; Metazoa - 937; Fungi - 62; Plants - 9801; Viruses - 12; Other Eukaryotes - 252 (source: NCBI BLink).  protein_id AT3G57640.1p  transcript_id AT3G57640.1  protein_id AT3G57640.1p  transcript_id AT3G57640.1  
At3g57645	chr3:021346342	0.0	W/21346342-21347204	AT3G57645.1  snRNA  gene_syn 67303.SNRNA00002, U2 SMALL NUCLEOLAR RNA 2, U2.2  gene U2.2  go_component snRNP U2|GO:0005686||TAS  go_process nuclear mRNA cis splicing, via spliceosome|GO:0045292||TAS  go_function RNA splicing factor activity, transesterification mechanism|GO:0031202||TAS  product U2.2 (U2 SMALL NUCLEOLAR RNA 2); snRNA  note gi|17661|emb|X06473.1|ATU22 Arabidopsis thaliana U2 RNA gene (U2.2)  transcript_id AT3G57645.1  
At3g57650	chr3:021349751	0.0	W/21349751-21349828,21350196-21350318,21350428-21350467,21350582-21350655,21350951-21351010,21351231-21351308,21351469-21351627,21351834-21351959,21352203-21352295,21352428-21352514,21352588-21352839	AT3G57650.1  CDS  gene_syn LPAT2, LYSOPHOSPHATIDYL ACYLTRANSFERASE 2  gene LPAT2  function Encodes an endoplasmic reticulum localized protein with lysophosphatidyl acyltransferase activity.  go_process metabolic process|GO:0008152||IEA  go_component endoplasmic reticulum|GO:0005783|15772283|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process metabolic process|GO:0008152||ISS  go_function 1-acylglycerol-3-phosphate O-acyltransferase activity|GO:0003841|15772283|IDA  go_function 1-acylglycerol-3-phosphate O-acyltransferase activity|GO:0003841||ISS  product LPAT2; 1-acylglycerol-3-phosphate O-acyltransferase  note LPAT2; FUNCTIONS IN: 1-acylglycerol-3-phosphate O-acyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: LPAT3; 1-acylglycerol-3-phosphate O-acyltransferase (TAIR:AT1G51260.1); Has 1240 Blast hits to 1238 proteins in 360 species: Archae - 0; Bacteria - 458; Metazoa - 462; Fungi - 144; Plants - 80; Viruses - 2; Other Eukaryotes - 94 (source: NCBI BLink).  protein_id AT3G57650.1p  transcript_id AT3G57650.1  protein_id AT3G57650.1p  transcript_id AT3G57650.1  
At3g57660	chr3:021353746	0.0	W/21353746-21353808,21353865-21354034,21354303-21354462,21354562-21354867,21355534-21355752,21355845-21356012,21356237-21356399,21356579-21356766,21357011-21357274,21357473-21357561,21357733-21357880,21357994-21358212,21358380-21358718,21358801-21358945,21359110-21359318,21359753-21359955,21360281-21360479,21360564-21360832,21361033-21361173,21361386-21362139,21362218-21362814	AT3G57660.1  CDS  gene_syn NRPA1  gene NRPA1  function Encodes a subunit of RNA polymerase I (aka RNA polymerase A).  go_component nucleus|GO:0005634|14617066|IDA  go_process transcription|GO:0006350||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_process transcription|GO:0006350||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product NRPA1; DNA binding / DNA-directed RNA polymerase/ zinc ion binding  note NRPA1; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding, zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081), DNA-directed RNA pol I, largest subunit (InterPro:IPR015699), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083); BEST Arabidopsis thaliana protein match is: NRPC1; DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding / zinc ion binding (TAIR:AT5G60040.1); Has 30774 Blast hits to 20704 proteins in 4091 species: Archae - 630; Bacteria - 6652; Metazoa - 6183; Fungi - 2237; Plants - 3079; Viruses - 715; Other Eukaryotes - 11278 (source: NCBI BLink).  protein_id AT3G57660.1p  transcript_id AT3G57660.1  protein_id AT3G57660.1p  transcript_id AT3G57660.1  
At3g57670	chr3:021370936	0.0	W/21370936-21371634,21372669-21373121	AT3G57670.1  CDS  gene_syn NO TRANSMITTING TRACT, NTT  gene NTT  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_process pollen tube growth|GO:0009860|17600712|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product NTT (NO TRANSMITTING TRACT); nucleic acid binding / transcription factor/ zinc ion binding  note NO TRANSMITTING TRACT (NTT); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: pollen tube growth, regulation of transcription; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) protein (WIP5) (TAIR:AT1G51220.1); Has 13992 Blast hits to 9473 proteins in 198 species: Archae - 2; Bacteria - 30; Metazoa - 12726; Fungi - 173; Plants - 540; Viruses - 59; Other Eukaryotes - 462 (source: NCBI BLink).  protein_id AT3G57670.1p  transcript_id AT3G57670.1  protein_id AT3G57670.1p  transcript_id AT3G57670.1  
At3g57680	chr3:021381054	0.0	W/21381054-21381392,21381478-21381564,21381652-21381768,21381874-21381960,21382072-21382150,21382228-21382316,21382404-21382439,21382513-21382632,21382711-21382797,21382882-21383031,21383180-21383287,21383378-21383629	AT3G57680.1  CDS  go_component membrane|GO:0016020|17432890|IDA  go_process proteolysis|GO:0006508||IEA  go_function protein binding|GO:0005515||IEA  go_function serine-type peptidase activity|GO:0008236||IEA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|ISS  go_process intracellular signaling cascade|GO:0007242||ISS  product peptidase S41 family protein  note peptidase S41 family protein; FUNCTIONS IN: serine-type peptidase activity, protein binding; INVOLVED IN: proteolysis, intracellular signaling cascade; LOCATED IN: chloroplast thylakoid lumen, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S41 (InterPro:IPR005151), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase S41A, C-terminal protease (InterPro:IPR004447); BEST Arabidopsis thaliana protein match is: C-terminal processing protease, putative (TAIR:AT4G17740.2); Has 6527 Blast hits to 6526 proteins in 1051 species: Archae - 0; Bacteria - 3042; Metazoa - 37; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 3364 (source: NCBI BLink).  protein_id AT3G57680.1p  transcript_id AT3G57680.1  protein_id AT3G57680.1p  transcript_id AT3G57680.1  
At3g57690	chr3:021384269	0.0	W/21384269-21384454	AT3G57690.1  CDS  gene_syn AGP23, ARABINOGALACTAN-PROTEIN 23, ATAGP23  gene AGP23  function Encodes a putative arabinogalactan-protein (AGP23).  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  product AGP23 (ARABINOGALACTAN-PROTEIN 23)  note ARABINOGALACTAN-PROTEIN 23 (AGP23); INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30 Blast hits to 30 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G57690.1p  transcript_id AT3G57690.1  protein_id AT3G57690.1p  transcript_id AT3G57690.1  
At3g57700	chr3:021384917	0.0	W/21384917-21385939	AT3G57700.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT3G57770.1); Has 46641 Blast hits to 46136 proteins in 1417 species: Archae - 23; Bacteria - 3362; Metazoa - 18296; Fungi - 2892; Plants - 14849; Viruses - 154; Other Eukaryotes - 7065 (source: NCBI BLink).  protein_id AT3G57700.1p  transcript_id AT3G57700.1  protein_id AT3G57700.1p  transcript_id AT3G57700.1  
At3g57710	chr3:021386233	0.0	C/21386233-21387288	AT3G57710.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT3G57730.1); Has 27334 Blast hits to 27083 proteins in 1059 species: Archae - 9; Bacteria - 2192; Metazoa - 6843; Fungi - 1213; Plants - 13632; Viruses - 64; Other Eukaryotes - 3381 (source: NCBI BLink).  protein_id AT3G57710.1p  transcript_id AT3G57710.1  protein_id AT3G57710.1p  transcript_id AT3G57710.1  
At3g57720	chr3:021387766	0.0	W/21387766-21388845	AT3G57720.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT3G57730.1); Has 36685 Blast hits to 36356 proteins in 1455 species: Archae - 13; Bacteria - 3440; Metazoa - 11573; Fungi - 1981; Plants - 14146; Viruses - 92; Other Eukaryotes - 5440 (source: NCBI BLink).  protein_id AT3G57720.1p  transcript_id AT3G57720.1  protein_id AT3G57720.1p  transcript_id AT3G57720.1  
At3g57730	chr3:021390328	0.0	C/21390328-21391395	AT3G57730.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT3G57720.1); Has 25053 Blast hits to 24811 proteins in 1093 species: Archae - 9; Bacteria - 2317; Metazoa - 5885; Fungi - 863; Plants - 12839; Viruses - 77; Other Eukaryotes - 3063 (source: NCBI BLink).  protein_id AT3G57730.1p  transcript_id AT3G57730.1  protein_id AT3G57730.1p  transcript_id AT3G57730.1  
At3g57740	chr3:021392671	0.0	W/21392671-21393744	AT3G57740.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT3G57750.2); Has 19097 Blast hits to 18904 proteins in 869 species: Archae - 2; Bacteria - 1359; Metazoa - 3822; Fungi - 566; Plants - 11801; Viruses - 20; Other Eukaryotes - 1527 (source: NCBI BLink).  protein_id AT3G57740.1p  transcript_id AT3G57740.1  protein_id AT3G57740.1p  transcript_id AT3G57740.1  
At3g57750	chr3:021394050	0.0	W/21394050-21395054	AT3G57750.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT3G57700.1); Has 34222 Blast hits to 33931 proteins in 1260 species: Archae - 12; Bacteria - 2598; Metazoa - 11752; Fungi - 1745; Plants - 13777; Viruses - 117; Other Eukaryotes - 4221 (source: NCBI BLink).  protein_id AT3G57750.1p  transcript_id AT3G57750.1  protein_id AT3G57750.1p  transcript_id AT3G57750.1  
At3g57750	chr3:021394050	0.0	W/21394050-21395054	AT3G57750.2  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT3G57700.1); Has 34222 Blast hits to 33931 proteins in 1260 species: Archae - 12; Bacteria - 2598; Metazoa - 11752; Fungi - 1745; Plants - 13777; Viruses - 117; Other Eukaryotes - 4221 (source: NCBI BLink).  protein_id AT3G57750.2p  transcript_id AT3G57750.2  protein_id AT3G57750.2p  transcript_id AT3G57750.2  
At3g57760	chr3:021395983	0.0	W/21395983-21397119	AT3G57760.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function ATP binding|GO:0005524||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G57740.1); Has 10081 Blast hits to 9948 proteins in 249 species: Archae - 0; Bacteria - 6; Metazoa - 263; Fungi - 14; Plants - 9741; Viruses - 4; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT3G57760.1p  transcript_id AT3G57760.1  protein_id AT3G57760.1p  transcript_id AT3G57760.1  
At3g57760	chr3:021395983	0.0	W/21395983-21397119	AT3G57760.2  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function ATP binding|GO:0005524||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G57740.1); Has 10081 Blast hits to 9948 proteins in 249 species: Archae - 0; Bacteria - 6; Metazoa - 263; Fungi - 14; Plants - 9741; Viruses - 4; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT3G57760.2p  transcript_id AT3G57760.2  protein_id AT3G57760.2p  transcript_id AT3G57760.2  
At3g57760	chr3:021395983	0.0	W/21395983-21397119	AT3G57760.3  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function ATP binding|GO:0005524||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G57740.1); Has 10081 Blast hits to 9948 proteins in 249 species: Archae - 0; Bacteria - 6; Metazoa - 263; Fungi - 14; Plants - 9741; Viruses - 4; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT3G57760.3p  transcript_id AT3G57760.3  protein_id AT3G57760.3p  transcript_id AT3G57760.3  
At3g57765	chr3:021397262	0.0	C/21397262-21398132	AT3G57765.1  snRNA  gene_syn 67303.SNRNA00001, U2 SMALL NUCLEOLAR RNA 3, U2.3  gene U2.3  function encodes a small nuclear RNA, which is a part of small nuclear ribonuclear particle (snRNP) and is involved in RNA processing such as splicing and polyadenylation.  go_component snRNP U2|GO:0005686||TAS  go_process nuclear mRNA cis splicing, via spliceosome|GO:0045292||TAS  go_function RNA splicing factor activity, transesterification mechanism|GO:0031202||TAS  product U2.3 (U2 SMALL NUCLEOLAR RNA 3); snRNA  note gi|17662|emb|X06474.1|ATU23 Arabidopsis thaliana U2 RNA gene (U2.3)  transcript_id AT3G57765.1  
At3g57770	chr3:021397542	0.0	W/21397542-21398300,21398371-21398421	AT3G57770.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot, stem; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT3G57700.1); Has 20455 Blast hits to 20264 proteins in 573 species: Archae - 5; Bacteria - 213; Metazoa - 5894; Fungi - 552; Plants - 12179; Viruses - 75; Other Eukaryotes - 1537 (source: NCBI BLink).  protein_id AT3G57770.1p  transcript_id AT3G57770.1  protein_id AT3G57770.1p  transcript_id AT3G57770.1  
At3g57780	chr3:021401569	0.0	C/21401569-21402326,21401199-21401481,21400909-21401097,21400630-21400803,21400368-21400538,21400170-21400283,21399766-21400089	AT3G57780.1  CDS  product unknown protein  note EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2); Has 3024 Blast hits to 2177 proteins in 255 species: Archae - 2; Bacteria - 181; Metazoa - 988; Fungi - 289; Plants - 172; Viruses - 72; Other Eukaryotes - 1320 (source: NCBI BLink).  protein_id AT3G57780.1p  transcript_id AT3G57780.1  protein_id AT3G57780.1p  transcript_id AT3G57780.1  
At3g57785	chr3:021404835	0.0	C/21404835-21405179	AT3G57785.1  CDS  go_component mitochondrion|GO:0005739|12837548|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, respiratory chain complex I; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42310.1); Has 81 Blast hits to 81 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 36; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G57785.1p  transcript_id AT3G57785.1  protein_id AT3G57785.1p  transcript_id AT3G57785.1  
At3g57790	chr3:021406496	0.0	C/21406496-21407088,21406008-21406339,21405387-21405934	AT3G57790.1  CDS  go_component plasma membrane|GO:0005886|17151019|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT3G42950.1); Has 1711 Blast hits to 1710 proteins in 275 species: Archae - 2; Bacteria - 578; Metazoa - 3; Fungi - 277; Plants - 764; Viruses - 2; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT3G57790.1p  transcript_id AT3G57790.1  protein_id AT3G57790.1p  transcript_id AT3G57790.1  
At3g57800	chr3:021410776	0.0	C/21410776-21411321,21410590-21410703,21410433-21410498,21409227-21409295,21409007-21409078,21408034-21408306	AT3G57800.2  CDS  gene_syn AT3G57795  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT2G42300.1); Has 1167 Blast hits to 1167 proteins in 79 species: Archae - 0; Bacteria - 2; Metazoa - 17; Fungi - 19; Plants - 1124; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G57800.2p  transcript_id AT3G57800.2  protein_id AT3G57800.2p  transcript_id AT3G57800.2  
At3g57800	chr3:021410776	0.0	C/21410776-21411321,21410590-21410703,21410433-21410498,21409841-21409936,21409526-21409570,21409227-21409295,21409007-21409078,21408034-21408306	AT3G57800.1  CDS  gene_syn AT3G57795  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT2G42300.1); Has 704 Blast hits to 701 proteins in 33 species: Archae - 0; Bacteria - 2; Metazoa - 6; Fungi - 4; Plants - 692; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G57800.1p  transcript_id AT3G57800.1  protein_id AT3G57800.1p  transcript_id AT3G57800.1  
At3g57810	chr3:021416336	0.0	W/21416336-21416550,21416680-21416849,21416930-21417051,21417229-21417269,21417423-21417521,21417632-21417809	AT3G57810.1  CDS  go_process biological_process|GO:0008150||ND  go_function cysteine-type peptidase activity|GO:0008234||ISS  product OTU-like cysteine protease family protein  note OTU-like cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38025.1); Has 413 Blast hits to 413 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 223; Fungi - 30; Plants - 120; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT3G57810.1p  transcript_id AT3G57810.1  protein_id AT3G57810.1p  transcript_id AT3G57810.1  
At3g57810	chr3:021416336	0.0	W/21416336-21416849,21416930-21417051,21417229-21417269,21417423-21417521,21417632-21417809	AT3G57810.2  CDS  go_process biological_process|GO:0008150||ND  go_function cysteine-type peptidase activity|GO:0008234||ISS  product OTU-like cysteine protease family protein  note OTU-like cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38025.1); Has 413 Blast hits to 413 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 223; Fungi - 30; Plants - 120; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT3G57810.2p  transcript_id AT3G57810.2  protein_id AT3G57810.2p  transcript_id AT3G57810.2  
At3g57810	chr3:021416336	0.0	W/21416336-21416849,21416930-21417051,21417229-21417269,21417423-21417521,21417632-21417809	AT3G57810.3  CDS  go_process biological_process|GO:0008150||ND  go_function cysteine-type peptidase activity|GO:0008234||ISS  product OTU-like cysteine protease family protein  note OTU-like cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38025.1); Has 413 Blast hits to 413 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 223; Fungi - 30; Plants - 120; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT3G57810.3p  transcript_id AT3G57810.3  protein_id AT3G57810.3p  transcript_id AT3G57810.3  
At3g57820	chr3:021418281	0.0	C/21418281-21418824	AT3G57820.1  pseudogenic_transcript  pseudo  note 60S ribosomal protein L21 (RPL21F), pseudogene, 60S RIBOSOMAL PROTEIN L21 - Arabidopsis thaliana, SWISSPROT:RL21_ARATH; blastp match of 75% identity and 2.5e-15 P-value to GP|3885884|gb|AAC78102.1||AF093630 60S ribosomal protein L21 {Oryza sativa}  
At3g57830	chr3:021419778	0.0	W/21419778-21421116,21421671-21422320	AT3G57830.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT2G42290.1); Has 75047 Blast hits to 50680 proteins in 1526 species: Archae - 45; Bacteria - 4593; Metazoa - 19622; Fungi - 2523; Plants - 39850; Viruses - 137; Other Eukaryotes - 8277 (source: NCBI BLink).  protein_id AT3G57830.1p  transcript_id AT3G57830.1  protein_id AT3G57830.1p  transcript_id AT3G57830.1  
At3g57840	chr3:021422823	0.0	W/21422823-21423287	AT3G57840.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product self-incompatibility protein-related  note self-incompatibility protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, sepal; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56385.1); Has 31 Blast hits to 31 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G57840.1p  transcript_id AT3G57840.1  protein_id AT3G57840.1p  transcript_id AT3G57840.1  
At3g57850	chr3:021424377	0.0	W/21424377-21424464,21424607-21424791	AT3G57850.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: embryo; EXPRESSED DURING: C globular stage; BEST Arabidopsis thaliana protein match is: self-incompatibility protein-related (TAIR:AT3G57840.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G57850.1p  transcript_id AT3G57850.1  protein_id AT3G57850.1p  transcript_id AT3G57850.1  
At3g57854	chr3:021425479	0.0	W/21425479-21425926	AT3G57854.1  pseudogenic_transcript  pseudo  function pseudogene similar to self-incompatibility  
At3g57860	chr3:021426733	0.0	W/21426733-21427077,21427435-21427821	AT3G57860.1  CDS  gene_syn UV-B-INSENSITIVE 4-LIKE, UVI4-LIKE  gene UVI4-LIKE  function Plant specific-protein of unknown function, shares 62% homology with UVI4 at aa level.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product UVI4-LIKE (UV-B-INSENSITIVE 4-LIKE)  note UV-B-INSENSITIVE 4-LIKE (UVI4-LIKE); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: UVI4 (UV-B-INSENSITIVE 4) (TAIR:AT2G42260.1); Has 23 Blast hits to 23 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G57860.1p  transcript_id AT3G57860.1  protein_id AT3G57860.1p  transcript_id AT3G57860.1  
At3g57870	chr3:021430042	0.0	C/21430042-21430110,21429832-21429915,21429192-21429344,21428986-21429099,21428831-21428893	AT3G57870.1  CDS  gene_syn AHUS5, ATSCE1, EMB1637, EMBRYO DEFECTIVE 1637, SCE1, SCE1A, SUMO CONJUGATING ENZYME 1A, SUMO CONJUGATION ENZYME 1  gene SCE1  function Encodes a SUMO liagse that directs the attachment of the small protein SUMO to target proteins via an isopeptide bond. This enzyme is localized to the nucleus and plants with reduced levels of this protein show higher sensitivity to ABA in root growth inhibition assays. It has high similarity to the yeast UBC9 SUMO ligase and is sometimes referred to by that name.  go_component nucleus|GO:0005634|12782728|IDA  go_process response to abscisic acid stimulus|GO:0009737|12782728|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|17644626|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process protein sumoylation|GO:0016925|18502747|IDA  go_function SUMO ligase activity|GO:0019789|12782728|IDA  product SCE1 (SUMO CONJUGATION ENZYME 1); SUMO ligase  note SUMO CONJUGATION ENZYME 1 (SCE1); FUNCTIONS IN: SUMO ligase activity; INVOLVED IN: embryonic development ending in seed dormancy, protein sumoylation, response to abscisic acid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2); ubiquitin-protein ligase (TAIR:AT2G02760.1); Has 7078 Blast hits to 7069 proteins in 301 species: Archae - 0; Bacteria - 0; Metazoa - 3419; Fungi - 1364; Plants - 1083; Viruses - 16; Other Eukaryotes - 1196 (source: NCBI BLink).  protein_id AT3G57870.1p  transcript_id AT3G57870.1  protein_id AT3G57870.1p  transcript_id AT3G57870.1  
At3g57880	chr3:021431198	0.0	C/21431198-21433519	AT3G57880.1  CDS  go_component cell wall|GO:0005618|16287169|IDA  go_process tryptophan biosynthetic process|GO:0000162||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: tryptophan biosynthetic process; LOCATED IN: endoplasmic reticulum, cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal, plant (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT1G51570.1); Has 4354 Blast hits to 3163 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 2997; Fungi - 169; Plants - 884; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink).  protein_id AT3G57880.1p  transcript_id AT3G57880.1  protein_id AT3G57880.1p  transcript_id AT3G57880.1  
At3g57890	chr3:021438271	0.0	W/21438271-21438777,21439485-21439625,21439771-21440145,21440231-21440335,21440465-21440605,21440944-21441147,21441259-21441351,21441446-21441557,21441652-21441695	AT3G57890.1  CDS  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product tubulin-specific chaperone C-related  note tubulin-specific chaperone C-related; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CARP motif (InterPro:IPR006599), C-CAP/cofactor C-like domain (InterPro:IPR017901), Tubulin binding cofactor C (InterPro:IPR012945); BEST Arabidopsis thaliana protein match is: tubulin-specific chaperone C-related (TAIR:AT2G42230.2); Has 286 Blast hits to 286 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 177; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT3G57890.1p  transcript_id AT3G57890.1  protein_id AT3G57890.1p  transcript_id AT3G57890.1  
At3g57900	chr3:021442473	0.0	C/21442473-21442574,21442281-21442385	AT3G57900.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: epidermis; Has 12 Blast hits to 12 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G57900.1p  transcript_id AT3G57900.1  protein_id AT3G57900.1p  transcript_id AT3G57900.1  
At3g57910	chr3:021442771	0.0	W/21442771-21442896,21443063-21443608,21443736-21443801,21443909-21443968	AT3G57910.1  CDS  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component intracellular|GO:0005622||ISS  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product D111/G-patch domain-containing protein  note D111/G-patch domain-containing protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: D111/G-patch (InterPro:IPR000467); BEST Arabidopsis thaliana protein match is: D111/G-patch domain-containing protein (TAIR:AT5G26610.2); Has 5088 Blast hits to 3153 proteins in 241 species: Archae - 10; Bacteria - 109; Metazoa - 2809; Fungi - 372; Plants - 190; Viruses - 44; Other Eukaryotes - 1554 (source: NCBI BLink).  protein_id AT3G57910.1p  transcript_id AT3G57910.1  protein_id AT3G57910.1p  transcript_id AT3G57910.1  
At3g57920	chr3:021445539	0.0	C/21445539-21445852,21445134-21445276,21444450-21445057	AT3G57920.1  CDS  gene_syn SPL15, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15  gene SPL15  function Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expression is regulated by MIR156b.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of cell size|GO:0008361|19211679|IMP  go_process vegetative to reproductive phase transition|GO:0010228|18278578|IGI  go_process regulation of cell proliferation|GO:0042127|19211679|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product SPL15 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15); DNA binding / transcription factor  note SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15 (SPL15); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of cell proliferation, regulation of cell size, vegetative to reproductive phase transition, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9); transcription factor (TAIR:AT2G42200.1); Has 530 Blast hits to 530 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 527; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G57920.1p  transcript_id AT3G57920.1  protein_id AT3G57920.1p  transcript_id AT3G57920.1  
At3g57930	chr3:021447250	0.0	C/21447250-21447675	AT3G57930.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42190.1); Has 1665 Blast hits to 1254 proteins in 137 species: Archae - 0; Bacteria - 32; Metazoa - 833; Fungi - 105; Plants - 87; Viruses - 30; Other Eukaryotes - 578 (source: NCBI BLink).  protein_id AT3G57930.1p  transcript_id AT3G57930.1  protein_id AT3G57930.1p  transcript_id AT3G57930.1  
At3g57930	chr3:021447250	0.0	C/21447250-21447675	AT3G57930.2  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42190.1); Has 1665 Blast hits to 1254 proteins in 137 species: Archae - 0; Bacteria - 32; Metazoa - 833; Fungi - 105; Plants - 87; Viruses - 30; Other Eukaryotes - 578 (source: NCBI BLink).  protein_id AT3G57930.2p  transcript_id AT3G57930.2  protein_id AT3G57930.2p  transcript_id AT3G57930.2  
At3g57940	chr3:021449560	0.0	W/21449560-21449664,21449756-21449847,21450039-21450210,21450308-21450430,21450518-21450691,21450775-21450885,21450979-21451112,21451216-21451309,21451520-21451618,21451710-21451846,21451959-21452050,21452387-21452510,21452621-21452708,21452775-21452874,21452945-21452997,21453203-21453379,21453465-21453502,21453652-21453745,21453878-21454057,21454140-21454248,21454317-21454386,21454474-21454621,21454820-21454948,21455051-21455176,21455423-21455488,21455583-21455834	AT3G57940.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1726 (InterPro:IPR013562), Protein of unknown function DUF699, ATPase putative (InterPro:IPR007807); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10490.1); Has 915 Blast hits to 873 proteins in 391 species: Archae - 82; Bacteria - 412; Metazoa - 163; Fungi - 92; Plants - 21; Viruses - 3; Other Eukaryotes - 142 (source: NCBI BLink).  protein_id AT3G57940.1p  transcript_id AT3G57940.1  protein_id AT3G57940.1p  transcript_id AT3G57940.1  
At3g57950	chr3:021460423	0.0	W/21460423-21460968	AT3G57950.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42180.1); Has 42 Blast hits to 42 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G57950.1p  transcript_id AT3G57950.1  protein_id AT3G57950.1p  transcript_id AT3G57950.1  
At3g57958	chr3:021462681	0.0	C/21462681-21462881	AT3G57958.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G57958.1p  transcript_id AT3G57958.1  protein_id AT3G57958.1p  transcript_id AT3G57958.1  
At3g57960	chr3:021463091	0.0	W/21463091-21463276,21463376-21463485,21463559-21463613,21463697-21463846,21463927-21464010,21464108-21464194	AT3G57960.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product emsy N terminus domain-containing protein / ENT domain-containing protein  note emsy N terminus domain-containing protein / ENT domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ENT (InterPro:IPR005491); BEST Arabidopsis thaliana protein match is: emsy N terminus domain-containing protein / ENT domain-containing protein (TAIR:AT3G57970.1); Has 44 Blast hits to 44 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G57960.1p  transcript_id AT3G57960.1  protein_id AT3G57960.1p  transcript_id AT3G57960.1  
At3g57970	chr3:021465226	0.0	W/21465226-21465441,21465519-21465628,21465708-21465840,21465920-21466144,21466227-21466301,21466394-21466522,21466606-21466677	AT3G57970.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product emsy N terminus domain-containing protein / ENT domain-containing protein  note emsy N terminus domain-containing protein / ENT domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, stem, petal, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ENT (InterPro:IPR005491), Tudor-like, plant (InterPro:IPR014002); BEST Arabidopsis thaliana protein match is: emsy N terminus domain-containing protein / ENT domain-containing protein (TAIR:AT3G57960.1); Has 60 Blast hits to 60 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G57970.1p  transcript_id AT3G57970.1  protein_id AT3G57970.1p  transcript_id AT3G57970.1  
At3g57980	chr3:021468853	0.0	C/21468853-21469148,21468160-21468766,21466919-21467914	AT3G57980.1  CDS  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product DNA-binding bromodomain-containing protein  note DNA-binding bromodomain-containing protein; FUNCTIONS IN: DNA binding; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Bromodomain (InterPro:IPR001487), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT2G42150.1); Has 4424 Blast hits to 3330 proteins in 288 species: Archae - 4; Bacteria - 192; Metazoa - 2249; Fungi - 445; Plants - 196; Viruses - 12; Other Eukaryotes - 1326 (source: NCBI BLink).  protein_id AT3G57980.1p  transcript_id AT3G57980.1  protein_id AT3G57980.1p  transcript_id AT3G57980.1  
At3g57990	chr3:021470244	0.0	C/21470244-21471347	AT3G57990.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; Has 1542 Blast hits to 1359 proteins in 41 species: Archae - 0; Bacteria - 4; Metazoa - 19; Fungi - 28; Plants - 33; Viruses - 0; Other Eukaryotes - 1458 (source: NCBI BLink).  protein_id AT3G57990.1p  transcript_id AT3G57990.1  protein_id AT3G57990.1p  transcript_id AT3G57990.1  
At3g58000	chr3:021474950	0.0	W/21474950-21475477	AT3G58000.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product VQ motif-containing protein  note VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT2G42140.1); Has 41 Blast hits to 41 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G58000.1p  transcript_id AT3G58000.1  protein_id AT3G58000.1p  transcript_id AT3G58000.1  
At3g58010	chr3:021477215	0.0	C/21477215-21477463,21476935-21477056,21476772-21476855,21476582-21476678,21476274-21476490,21476136-21476188,21475949-21476053	AT3G58010.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_component plastoglobule|GO:0010287|16461379|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42130.4); Has 103 Blast hits to 103 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 100; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G58010.1p  transcript_id AT3G58010.1  protein_id AT3G58010.1p  transcript_id AT3G58010.1  
At3g58020	chr3:021479501	0.0	W/21479501-21479608,21479764-21479856,21479967-21480087,21480320-21480632,21480736-21480790,21480907-21480981	AT3G58020.1  CDS  go_component nucleus|GO:0005634|14617066|IDA  go_function heat shock protein binding|GO:0031072||IEA  go_process protein folding|GO:0006457||ISS  product heat shock protein binding  note heat shock protein binding; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G42080.1); Has 699 Blast hits to 698 proteins in 177 species: Archae - 6; Bacteria - 127; Metazoa - 231; Fungi - 35; Plants - 158; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink).  protein_id AT3G58020.1p  transcript_id AT3G58020.1  protein_id AT3G58020.1p  transcript_id AT3G58020.1  
At3g58030	chr3:021485527	0.0	W/21485527-21486837	AT3G58030.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G42030.1); Has 3321 Blast hits to 3314 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 2190; Fungi - 307; Plants - 434; Viruses - 17; Other Eukaryotes - 373 (source: NCBI BLink).  protein_id AT3G58030.1p  transcript_id AT3G58030.1  protein_id AT3G58030.1p  transcript_id AT3G58030.1  
At3g58030	chr3:021485527	0.0	W/21485527-21486837	AT3G58030.2  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G42030.1); Has 3321 Blast hits to 3314 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 2190; Fungi - 307; Plants - 434; Viruses - 17; Other Eukaryotes - 373 (source: NCBI BLink).  protein_id AT3G58030.2p  transcript_id AT3G58030.2  protein_id AT3G58030.2p  transcript_id AT3G58030.2  
At3g58030	chr3:021485527	0.0	W/21485527-21486837	AT3G58030.3  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G42030.1); Has 3321 Blast hits to 3314 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 2190; Fungi - 307; Plants - 434; Viruses - 17; Other Eukaryotes - 373 (source: NCBI BLink).  protein_id AT3G58030.3p  transcript_id AT3G58030.3  protein_id AT3G58030.3p  transcript_id AT3G58030.3  
At3g58035	chr3:021487317	0.0	W/21487317-21487398	AT3G58035.1  tRNA  gene_syn 67304.TRNA-SER-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: GCT)  transcript_id AT3G58035.1  
At3g58040	chr3:021489612	0.0	W/21489612-21489830,21489912-21490298,21490765-21491085	AT3G58040.1  CDS  gene_syn SEVEN IN ABSENTIA OF ARABIDOPSIS 2, SINAT2  gene SINAT2  function Encodes a RING finger domain containing protein that interacts with AtRAP2.2.  go_component nucleus|GO:0005634||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_process multicellular organismal development|GO:0007275||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_process multicellular organismal development|GO:0007275||ISS  product SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2); protein binding / ubiquitin-protein ligase/ zinc ion binding  note SEVEN IN ABSENTIA OF ARABIDOPSIS 2 (SINAT2); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Zinc finger, SIAH-type (InterPro:IPR013010), Zinc finger, RING-type (InterPro:IPR001841), Seven in absentia protein, TRAF-like domain (InterPro:IPR018121), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven in absentia protein (InterPro:IPR004162), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: seven in absentia (SINA) family protein (TAIR:AT2G41980.1); Has 1445 Blast hits to 1440 proteins in 633 species: Archae - 0; Bacteria - 0; Metazoa - 1104; Fungi - 4; Plants - 250; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).  protein_id AT3G58040.1p  transcript_id AT3G58040.1  protein_id AT3G58040.1p  transcript_id AT3G58040.1  
At3g58050	chr3:021492539	0.0	W/21492539-21492631,21492807-21493175,21493248-21493507,21493596-21493682,21493770-21493911,21494049-21494420,21494536-21494667,21494764-21494892,21494973-21497018	AT3G58050.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41960.1); Has 14907 Blast hits to 8052 proteins in 412 species: Archae - 37; Bacteria - 556; Metazoa - 7368; Fungi - 1441; Plants - 500; Viruses - 46; Other Eukaryotes - 4959 (source: NCBI BLink).  protein_id AT3G58050.1p  transcript_id AT3G58050.1  protein_id AT3G58050.1p  transcript_id AT3G58050.1  
At3g58060	chr3:021499475	0.0	C/21499475-21499676,21499203-21499393,21498926-21499124,21498634-21498812,21498409-21498559,21498194-21498330,21497778-21497954	AT3G58060.1  CDS  go_component membrane|GO:0016020||IEA  go_process cation transport|GO:0006812||IEA  go_function cation transmembrane transporter activity|GO:0008324||IEA  go_component membrane|GO:0016020||ISS  go_process cation transport|GO:0006812||ISS  go_function cation transmembrane transporter activity|GO:0008324||ISS  go_function efflux transmembrane transporter activity|GO:0015562||ISS  product cation efflux family protein / metal tolerance protein, putative (MTPc3)  note cation efflux family protein / metal tolerance protein, putative (MTPc3); FUNCTIONS IN: cation transmembrane transporter activity, efflux transmembrane transporter activity; INVOLVED IN: cation transport; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: cation efflux family protein (TAIR:AT1G79520.1); Has 2385 Blast hits to 2381 proteins in 905 species: Archae - 85; Bacteria - 1856; Metazoa - 41; Fungi - 167; Plants - 102; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).  protein_id AT3G58060.1p  transcript_id AT3G58060.1  protein_id AT3G58060.1p  transcript_id AT3G58060.1  
At3g58070	chr3:021506845	0.0	C/21506845-21507606	AT3G58070.1  CDS  gene_syn F9D24.2, GIS, GLABROUS INFLORESCENCE STEMS  gene GIS  function Putative transcription factor, contains C2H2 domain, regulates aspects of shoot maturation in Arabidopsis thaliana. GIS loss-of-function mutations affect the epidermal differentiation of inflorescence organs, causing a premature decrease in trichome production on successive leaves, stem internodes, and branches. Overexpression has the opposite effect on trichome initiation and causes other heterochronic phenotypes, affecting flowering and juvenile adult leaf transition and inducing the formation of rosette leaves on inflorescence stems.  go_component intracellular|GO:0005622||IEA  go_process response to gibberellin stimulus|GO:0009739|16679458|IMP  go_process trichome differentiation|GO:0010026|16679458|IMP  go_process trichome differentiation|GO:0010026|17507408|IMP  go_process trichome branching|GO:0010091|16679458|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product GIS (GLABROUS INFLORESCENCE STEMS); nucleic acid binding / transcription factor/ zinc ion binding  note GLABROUS INFLORESCENCE STEMS (GIS); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: trichome branching, trichome differentiation, response to gibberellin stimulus, regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: ZFP8 (ZINC FINGER PROTEIN 8); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT2G41940.1); Has 340 Blast hits to 338 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 338; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G58070.1p  transcript_id AT3G58070.1  protein_id AT3G58070.1p  transcript_id AT3G58070.1  
At3g58080	chr3:021510484	0.0	C/21510484-21510562,21510306-21510391	AT3G58080.1  CDS  gene_syn F9D24.3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G58080.1p  transcript_id AT3G58080.1  protein_id AT3G58080.1p  transcript_id AT3G58080.1  
At3g58090	chr3:021513570	0.0	C/21513570-21513905,21513425-21513479,21512911-21513012,21512479-21512801	AT3G58090.1  CDS  gene_syn F9D24.1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: disease resistance-responsive family protein (TAIR:AT1G65870.1).  protein_id AT3G58090.1p  transcript_id AT3G58090.1  protein_id AT3G58090.1p  transcript_id AT3G58090.1  
At3g58100	chr3:021515975	0.0	C/21515975-21516329,21515783-21515810,21515397-21515556	AT3G58100.1  CDS  gene_syn PDCB5, PLASMODESMATA CALLOSE-BINDING PROTEIN 5  gene PDCB5  function Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and is predicted to bind callose.  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_component plasmodesma|GO:0009506|19223515|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function polysaccharide binding|GO:0030247|19223515|ISS  go_function callose binding|GO:0080087|19223515|ISS  product PDCB5 (PLASMODESMATA CALLOSE-BINDING PROTEIN 5); callose binding / polysaccharide binding  note PLASMODESMATA CALLOSE-BINDING PROTEIN 5 (PDCB5); FUNCTIONS IN: callose binding, polysaccharide binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasmodesma, anchored to plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29380.1); Has 812 Blast hits to 776 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 45; Plants - 767; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G58100.1p  transcript_id AT3G58100.1  protein_id AT3G58100.1p  transcript_id AT3G58100.1  
At3g58110	chr3:021516775	0.0	W/21516775-21519129	AT3G58110.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42370.1); Has 2569 Blast hits to 1846 proteins in 200 species: Archae - 7; Bacteria - 84; Metazoa - 1001; Fungi - 228; Plants - 104; Viruses - 61; Other Eukaryotes - 1084 (source: NCBI BLink).  protein_id AT3G58110.1p  transcript_id AT3G58110.1  protein_id AT3G58110.1p  transcript_id AT3G58110.1  
At3g58120	chr3:021522456	0.0	C/21522456-21523078,21522198-21522288,21521966-21522092,21521289-21521437	AT3G58120.1  CDS  gene_syn ATBZIP61, BZIP61  gene BZIP61  function Encodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP34. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634|17719007|IDA  go_function DNA binding|GO:0003677|17719007|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription activator activity|GO:0016563|17719007|IDA  product BZIP61; DNA binding / transcription activator/ transcription factor  note BZIP61; FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT2G42380.2); Has 7040 Blast hits to 3340 proteins in 157 species: Archae - 2; Bacteria - 17; Metazoa - 744; Fungi - 153; Plants - 765; Viruses - 2; Other Eukaryotes - 5357 (source: NCBI BLink).  protein_id AT3G58120.1p  transcript_id AT3G58120.1  protein_id AT3G58120.1p  transcript_id AT3G58120.1  
At3g58130	chr3:021527946	0.0	W/21527946-21528054,21528162-21528222,21528346-21528416,21528589-21528653,21528753-21528797,21528871-21528951,21529045-21529112,21529187-21529235,21529318-21529472,21529585-21529654	AT3G58130.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-related  note N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: N-acetylglucosaminyl phosphatidylinositol deacetylase (InterPro:IPR003737); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G27340.4); Has 346 Blast hits to 344 proteins in 163 species: Archae - 0; Bacteria - 54; Metazoa - 92; Fungi - 109; Plants - 28; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT3G58130.1p  transcript_id AT3G58130.1  protein_id AT3G58130.1p  transcript_id AT3G58130.1  
At3g58130	chr3:021527946	0.0	W/21527946-21528054,21528162-21528222,21528346-21528416,21528589-21528653,21528753-21528797,21528871-21528951,21529045-21529112,21529187-21529235,21529318-21529472,21529585-21529654	AT3G58130.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-related  note N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: N-acetylglucosaminyl phosphatidylinositol deacetylase (InterPro:IPR003737); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G27340.4); Has 346 Blast hits to 344 proteins in 163 species: Archae - 0; Bacteria - 54; Metazoa - 92; Fungi - 109; Plants - 28; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT3G58130.2p  transcript_id AT3G58130.2  protein_id AT3G58130.2p  transcript_id AT3G58130.2  
At3g58140	chr3:021532191	0.0	C/21532191-21532386,21531890-21532083,21531600-21531806,21531397-21531514,21531156-21531232,21530800-21530979,21530655-21530699,21530449-21530553,21530199-21530315,21529988-21530038	AT3G58140.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process translation|GO:0006412||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_process phenylalanyl-tRNA aminoacylation|GO:0006432||IEA  go_process tRNA processing|GO:0008033||IEA  go_function tRNA binding|GO:0000049||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function phenylalanine-tRNA ligase activity|GO:0004826||IEA  go_function ATP binding|GO:0005524||IEA  go_component mitochondrion|GO:0005739|16251277|IDA  go_component chloroplast|GO:0009507|16251277|IDA  go_process phenylalanyl-tRNA aminoacylation|GO:0006432||ISS  go_function phenylalanine-tRNA ligase activity|GO:0004826||ISS  go_function ATP binding|GO:0005524||ISS  product phenylalanyl-tRNA synthetase class IIc family protein  note phenylalanyl-tRNA synthetase class IIc family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: tRNA processing, phenylalanyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: mitochondrion, chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phenylalanyl-tRNA synthetase, class IIc, C-terminal (InterPro:IPR018157), Phenylalanyl-tRNA synthetase, class IIc, mitochondrial (InterPro:IPR004530), Phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding (InterPro:IPR005121), Phenylalanyl-tRNA synthetase, class IIc, conserved region (InterPro:IPR002319), Aminoacyl-tRNA synthetase, class II, conserved region (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative (TAIR:AT4G39280.1); Has 8512 Blast hits to 8485 proteins in 1879 species: Archae - 160; Bacteria - 4545; Metazoa - 286; Fungi - 187; Plants - 60; Viruses - 0; Other Eukaryotes - 3274 (source: NCBI BLink).  protein_id AT3G58140.1p  transcript_id AT3G58140.1  protein_id AT3G58140.1p  transcript_id AT3G58140.1  
At3g58150	chr3:021533911	0.0	C/21533911-21534072,21533580-21533714,21533268-21533354,21532947-21533147	AT3G58150.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Optic atrophy 3-like (InterPro:IPR010754); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28510.1); Has 268 Blast hits to 268 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 74; Plants - 40; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT3G58150.1p  transcript_id AT3G58150.1  protein_id AT3G58150.1p  transcript_id AT3G58150.1  
At3g58160	chr3:021534797	0.0	W/21534797-21534922,21535043-21535186,21535304-21535449,21535535-21535691,21535984-21536042,21536178-21536337,21536410-21536559,21536648-21536784,21536852-21536998,21537090-21537191,21537507-21537564,21537646-21537747,21538188-21538225,21538336-21538462,21538551-21538718,21538857-21538988,21539064-21539173,21539280-21539340,21539495-21539672,21539772-21539977,21540077-21540196,21540316-21540966,21541101-21541240,21541371-21541627,21541825-21541877	AT3G58160.1  CDS  gene_syn ATMYOS3, ATXIJ, MYA3, MYOSIN A3, MYOSIN XI J, MYOSIN XI-16, XI-16, XIJ  gene XIJ  function Class XI myosin gene expressed in flowers from 4-6 week old plants and leaves from 3 week old plants  go_component vacuole|GO:0005773|15539469|IDA  go_component myosin complex|GO:0016459|7811972|ISS  go_process actin filament-based movement|GO:0030048|11516337|TAS  go_function motor activity|GO:0003774|11516337|ISS  product XIJ; motor  note XIJ; FUNCTIONS IN: motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: myosin complex, vacuole; EXPRESSED IN: leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor region (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: XIE; motor/ protein binding (TAIR:AT1G54560.1); Has 11096 Blast hits to 8203 proteins in 575 species: Archae - 9; Bacteria - 186; Metazoa - 6885; Fungi - 806; Plants - 487; Viruses - 85; Other Eukaryotes - 2638 (source: NCBI BLink).  protein_id AT3G58160.1p  transcript_id AT3G58160.1  protein_id AT3G58160.1p  transcript_id AT3G58160.1  
At3g58165	chr3:021542282	0.0	W/21542282-21542352	AT3G58165.1  tRNA  gene_syn 67305.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: GCC)  transcript_id AT3G58165.1  
At3g58170	chr3:021543762	0.0	C/21543762-21543775,21543340-21543487,21543005-21543061,21542856-21542915,21542632-21542721	AT3G58170.1  CDS  gene_syn ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14A, ATBET11, ATBS14A, BET11, BET1P/SFT1P-LIKE PROTEIN 14A, BS14A  gene BS14A  function Encodes a Bet1/Sft1-like SNARE protein which fully suppresses the temperature-sensitive growth defect in <i>sft1-1</i> yeast cells; however, it cannot support the deletion of the yeast BET1 gene (<i>bet1& 916;</i>).  go_component plasma membrane|GO:0005886|17644812|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_process ER to Golgi vesicle-mediated transport|GO:0006888||ISS  go_function SNAP receptor activity|GO:0005484|11445081|IGI  go_function protein transporter activity|GO:0008565||ISS  product BS14A (BET1P/SFT1P-LIKE PROTEIN 14A); SNAP receptor/ protein transporter  note BET1P/SFT1P-LIKE PROTEIN 14A (BS14A); FUNCTIONS IN: protein transporter activity, SNAP receptor activity; INVOLVED IN: ER to Golgi vesicle-mediated transport; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: ATBET12; SNAP receptor/ protein transporter (TAIR:AT4G14455.1); Has 260 Blast hits to 259 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 178; Fungi - 15; Plants - 46; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT3G58170.1p  transcript_id AT3G58170.1  protein_id AT3G58170.1p  transcript_id AT3G58170.1  
At3g58180	chr3:021544189	0.0	W/21544189-21544345,21544697-21544830,21544922-21545157,21545243-21545381,21545525-21545651,21545747-21545865,21545949-21545981	AT3G58180.1  CDS  go_function binding|GO:0005488||IEA  go_component phycobilisome|GO:0030089||ISS  go_process biological_process|GO:0008150||ND  go_function lyase activity|GO:0016829||ISS  product PBS lyase HEAT-like repeat-containing protein  note PBS lyase HEAT-like repeat-containing protein; FUNCTIONS IN: lyase activity, binding; INVOLVED IN: biological_process unknown; LOCATED IN: phycobilisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), PBS lyase HEAT-like repeat (InterPro:IPR004155); BEST Arabidopsis thaliana protein match is: PBS lyase HEAT-like repeat-containing protein (TAIR:AT3G62530.1); Has 1505 Blast hits to 797 proteins in 276 species: Archae - 192; Bacteria - 504; Metazoa - 254; Fungi - 237; Plants - 43; Viruses - 0; Other Eukaryotes - 275 (source: NCBI BLink).  protein_id AT3G58180.1p  transcript_id AT3G58180.1  protein_id AT3G58180.1p  transcript_id AT3G58180.1  
At3g58190	chr3:021549198	0.0	C/21549198-21549488,21548716-21549081	AT3G58190.1  CDS  gene_syn ASL16, ASYMMETRIC LEAVES 2-LIKE 16, LATERAL ORGAN BOUNDARIES-DOMAIN 29, LBD29  gene LBD29  function This gene contains two auxin-responsive element (AuxRE).  go_component nucleus|GO:0005634|17259263|IDA  go_process response to auxin stimulus|GO:0009733|17259263|IEP  go_process lateral root formation|GO:0010311|17259263|IMP  product LBD29 (LATERAL ORGAN BOUNDARIES-DOMAIN 29)  note LATERAL ORGAN BOUNDARIES-DOMAIN 29 (LBD29); INVOLVED IN: response to auxin stimulus, lateral root formation; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42440.1); Has 504 Blast hits to 501 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 504; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G58190.1p  transcript_id AT3G58190.1  protein_id AT3G58190.1p  transcript_id AT3G58190.1  
At3g58193	chr3:021559060	0.0	W/21559060-21559139	AT3G58193.1  snoRNA  gene_syn 67305.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT3G58193.1  
At3g58196	chr3:021559244	0.0	W/21559244-21559320	AT3G58196.1  snoRNA  gene_syn 67305.SNORNA00002  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT3G58196.1  
At3g58200	chr3:021561252	0.0	C/21561252-21561358,21561004-21561164,21560601-21560896,21560086-21560481	AT3G58200.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT3G58210.1); Has 450 Blast hits to 384 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 45; Fungi - 12; Plants - 351; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT3G58200.1p  transcript_id AT3G58200.1  protein_id AT3G58200.1p  transcript_id AT3G58200.1  
At3g58210	chr3:021563961	0.0	C/21563961-21564067,21563709-21563872,21563136-21563452,21562645-21563049	AT3G58210.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT3G58270.2); Has 673 Blast hits to 582 proteins in 97 species: Archae - 2; Bacteria - 3; Metazoa - 104; Fungi - 69; Plants - 437; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT3G58210.1p  transcript_id AT3G58210.1  protein_id AT3G58210.1p  transcript_id AT3G58210.1  
At3g58220	chr3:021566317	0.0	C/21566317-21566435,21566065-21566225,21565173-21565948	AT3G58220.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT3G58200.1); Has 41653 Blast hits to 10736 proteins in 792 species: Archae - 55; Bacteria - 20015; Metazoa - 8182; Fungi - 1730; Plants - 1134; Viruses - 308; Other Eukaryotes - 10229 (source: NCBI BLink).  protein_id AT3G58220.1p  transcript_id AT3G58220.1  protein_id AT3G58220.1p  transcript_id AT3G58220.1  
At3g58220	chr3:021566317	0.0	C/21566317-21566435,21566065-21566225,21565272-21565948,21564677-21565081	AT3G58220.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT3G58210.1); Has 9980 Blast hits to 5896 proteins in 419 species: Archae - 26; Bacteria - 1150; Metazoa - 2787; Fungi - 807; Plants - 643; Viruses - 139; Other Eukaryotes - 4428 (source: NCBI BLink).  protein_id AT3G58220.2p  transcript_id AT3G58220.2  protein_id AT3G58220.2p  transcript_id AT3G58220.2  
At3g58230	chr3:021567340	0.0	C/21567340-21567396,21566860-21567264	AT3G58230.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58320.1); Has 128 Blast hits to 118 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G58230.1p  transcript_id AT3G58230.1  protein_id AT3G58230.1p  transcript_id AT3G58230.1  
At3g58240	chr3:021569721	0.0	C/21569721-21569827,21569470-21569630,21569081-21569370,21568530-21568925	AT3G58240.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT3G58270.2); Has 235 Blast hits to 212 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 226; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT3G58240.1p  transcript_id AT3G58240.1  protein_id AT3G58240.1p  transcript_id AT3G58240.1  
At3g58250	chr3:021572031	0.0	C/21572031-21572143,21571713-21571876,21571369-21571580,21570745-21571209	AT3G58250.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT3G58360.1); Has 791 Blast hits to 728 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 255; Fungi - 81; Plants - 405; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT3G58250.1p  transcript_id AT3G58250.1  protein_id AT3G58250.1p  transcript_id AT3G58250.1  
At3g58260	chr3:021575008	0.0	C/21575008-21575114,21574748-21574917,21574345-21574559,21573754-21574227	AT3G58260.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT3G58270.2); Has 614 Blast hits to 557 proteins in 81 species: Archae - 2; Bacteria - 0; Metazoa - 205; Fungi - 30; Plants - 349; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT3G58260.1p  transcript_id AT3G58260.1  protein_id AT3G58260.1p  transcript_id AT3G58260.1  
At3g58270	chr3:021577549	0.0	C/21577549-21577655,21577302-21577459,21576732-21577093,21576033-21576437	AT3G58270.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT3G58210.1); Has 981 Blast hits to 894 proteins in 145 species: Archae - 5; Bacteria - 16; Metazoa - 351; Fungi - 89; Plants - 415; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT3G58270.1p  transcript_id AT3G58270.1  protein_id AT3G58270.1p  transcript_id AT3G58270.1  
At3g58270	chr3:021577549	0.0	C/21577549-21577655,21577302-21577459,21576732-21577093,21576033-21576437	AT3G58270.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT3G58210.1); Has 981 Blast hits to 894 proteins in 145 species: Archae - 5; Bacteria - 16; Metazoa - 351; Fungi - 89; Plants - 415; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT3G58270.2p  transcript_id AT3G58270.2  protein_id AT3G58270.2p  transcript_id AT3G58270.2  
At3g58280	chr3:021579447	0.0	C/21579447-21579537,21579075-21579334,21578617-21578997	AT3G58280.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT3G58290.1); Has 195 Blast hits to 180 proteins in 15 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 185; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT3G58280.1p  transcript_id AT3G58280.1  protein_id AT3G58280.1p  transcript_id AT3G58280.1  
At3g58290	chr3:021581743	0.0	C/21581743-21581861,21581413-21581597,21580926-21581200,21580572-21580841	AT3G58290.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT3G58340.1); Has 375 Blast hits to 321 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 4; Plants - 343; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT3G58290.1p  transcript_id AT3G58290.1  protein_id AT3G58290.1p  transcript_id AT3G58290.1  
At3g58300	chr3:021583250	0.0	C/21583250-21583390,21582764-21583168	AT3G58300.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58330.1); Has 148 Blast hits to 134 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G58300.1p  transcript_id AT3G58300.1  protein_id AT3G58300.1p  transcript_id AT3G58300.1  
At3g58310	chr3:021584692	0.0	C/21584692-21585030,21584038-21584475	AT3G58310.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product receptor-like protein kinase-related  note receptor-like protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: receptor protein kinase-related (TAIR:AT3G22060.1); Has 931 Blast hits to 908 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 931; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G58310.1p  transcript_id AT3G58310.1  protein_id AT3G58310.1p  transcript_id AT3G58310.1  
At3g58320	chr3:021586062	0.0	C/21586062-21586328,21585567-21585974	AT3G58320.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT3G58270.2); Has 134 Blast hits to 120 proteins in 3 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G58320.1p  transcript_id AT3G58320.1  protein_id AT3G58320.1p  transcript_id AT3G58320.1  
At3g58330	chr3:021587880	0.0	C/21587880-21588002,21587362-21587760	AT3G58330.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58300.1); Has 144 Blast hits to 132 proteins in 6 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 2; Plants - 135; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G58330.1p  transcript_id AT3G58330.1  protein_id AT3G58330.1p  transcript_id AT3G58330.1  
At3g58340	chr3:021590295	0.0	C/21590295-21590401,21590048-21590205,21589553-21589881,21589071-21589454	AT3G58340.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT3G58410.1); Has 483 Blast hits to 413 proteins in 71 species: Archae - 1; Bacteria - 9; Metazoa - 6; Fungi - 60; Plants - 356; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT3G58340.1p  transcript_id AT3G58340.1  protein_id AT3G58340.1p  transcript_id AT3G58340.1  
At3g58347	chr3:021591188	0.0	C/21591188-21591388	AT3G58347.1  pseudogenic_transcript  pseudo  function Pseudogene of AT3G58330  
At3g58350	chr3:021592730	0.0	C/21592730-21592836,21592488-21592654,21592171-21592397,21591618-21592022	AT3G58350.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, leaf apex, hypocotyl, flower, root; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT3G58360.1); Has 397 Blast hits to 343 proteins in 34 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 19; Plants - 349; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT3G58350.1p  transcript_id AT3G58350.1  protein_id AT3G58350.1p  transcript_id AT3G58350.1  
At3g58360	chr3:021594760	0.0	C/21594760-21594866,21594524-21594681,21594013-21594239,21593505-21593909	AT3G58360.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT3G58350.1); Has 499 Blast hits to 419 proteins in 66 species: Archae - 2; Bacteria - 0; Metazoa - 14; Fungi - 63; Plants - 389; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT3G58360.1p  transcript_id AT3G58360.1  protein_id AT3G58360.1p  transcript_id AT3G58360.1  
At3g58370	chr3:021596284	0.0	C/21596284-21596538,21595774-21596178	AT3G58370.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product K-Cl Co-transporter type 1 protein-related / KCC1 protein-related  note K-Cl Co-transporter type 1 protein-related / KCC1 protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT3G58270.2); Has 151 Blast hits to 134 proteins in 9 species: Archae - 0; Bacteria - 2; Metazoa - 6; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT3G58370.1p  transcript_id AT3G58370.1  protein_id AT3G58370.1p  transcript_id AT3G58370.1  
At3g58380	chr3:021599089	0.0	C/21599089-21599195,21598852-21599012,21598514-21598755,21597965-21598378	AT3G58380.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT3G58360.1); Has 174 Blast hits to 151 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 174; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G58380.1p  transcript_id AT3G58380.1  protein_id AT3G58380.1p  transcript_id AT3G58380.1  
At3g58390	chr3:021600030	0.0	C/21600030-21601217	AT3G58390.1  CDS  go_component nucleus|GO:0005634||IEA  go_process translation|GO:0006412||IEA  go_process translational termination|GO:0006415||ISS  go_function translation release factor activity|GO:0003747||ISS  product eukaryotic release factor 1 family protein / eRF1 family protein  note eukaryotic release factor 1 family protein / eRF1 family protein; FUNCTIONS IN: translation release factor activity; INVOLVED IN: translational termination, translation; LOCATED IN: nucleus; EXPRESSED IN: sperm cell, cultured cell; CONTAINS InterPro DOMAIN/s: eRF1 domain 2 (InterPro:IPR005141), eRF1 domain 3 (InterPro:IPR005142), eRF1 domain 1 (InterPro:IPR005140), Probable translation factor pelota (InterPro:IPR004405); BEST Arabidopsis thaliana protein match is: PEL1 (PELOTA); translation release factor (TAIR:AT4G27650.1); Has 522 Blast hits to 520 proteins in 210 species: Archae - 130; Bacteria - 0; Metazoa - 118; Fungi - 104; Plants - 28; Viruses - 1; Other Eukaryotes - 141 (source: NCBI BLink).  protein_id AT3G58390.1p  transcript_id AT3G58390.1  protein_id AT3G58390.1p  transcript_id AT3G58390.1  
At3g58400	chr3:021604040	0.0	C/21604040-21604063,21603764-21603922,21603524-21603662,21603213-21603436,21602667-21603071	AT3G58400.1  CDS  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT3G58350.1); Has 238 Blast hits to 211 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 229; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G58400.1p  transcript_id AT3G58400.1  protein_id AT3G58400.1p  transcript_id AT3G58400.1  
At3g58410	chr3:021606060	0.0	C/21606060-21606229,21605847-21605976,21605409-21605690,21604871-21605275	AT3G58410.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT3G58340.1); Has 409 Blast hits to 330 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 20; Plants - 359; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT3G58410.1p  transcript_id AT3G58410.1  protein_id AT3G58410.1p  transcript_id AT3G58410.1  
At3g58420	chr3:021612303	0.0	C/21612303-21612409,21612123-21612214,21611129-21611278,21610464-21610744,21609307-21609561	AT3G58420.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT3G58340.1); Has 146 Blast hits to 133 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 5; Plants - 138; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G58420.1p  transcript_id AT3G58420.1  protein_id AT3G58420.1p  transcript_id AT3G58420.1  
At3g58430	chr3:021616071	0.0	C/21616071-21616174,21615816-21615970,21615069-21615500,21614745-21614864,21614273-21614472,21613786-21614181,21613163-21613363	AT3G58430.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT3G58410.1); Has 507 Blast hits to 381 proteins in 80 species: Archae - 4; Bacteria - 42; Metazoa - 44; Fungi - 15; Plants - 295; Viruses - 3; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT3G58430.1p  transcript_id AT3G58430.1  protein_id AT3G58430.1p  transcript_id AT3G58430.1  
At3g58440	chr3:021621140	0.0	C/21621140-21621249,21620901-21621055,21620061-21620710,21619576-21619937,21619176-21619285,21619003-21619127,21618446-21618739	AT3G58440.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58220.2); Has 980 Blast hits to 762 proteins in 147 species: Archae - 4; Bacteria - 66; Metazoa - 143; Fungi - 99; Plants - 401; Viruses - 9; Other Eukaryotes - 258 (source: NCBI BLink).  protein_id AT3G58440.1p  transcript_id AT3G58440.1  protein_id AT3G58440.1p  transcript_id AT3G58440.1  
At3g58450	chr3:021622032	0.0	W/21622032-21622299,21622404-21622513,21622730-21622848,21622940-21623057	AT3G58450.1  CDS  go_process response to stress|GO:0006950||IEA  go_component cellular_component|GO:0005575||ND  go_process response to stress|GO:0006950||ISS  go_function molecular_function|GO:0003674||ND  product universal stress protein (USP) family protein  note universal stress protein (USP) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: universal stress protein (USP) family protein (TAIR:AT3G11930.2); Has 2946 Blast hits to 2816 proteins in 611 species: Archae - 280; Bacteria - 1965; Metazoa - 49; Fungi - 71; Plants - 425; Viruses - 0; Other Eukaryotes - 156 (source: NCBI BLink).  protein_id AT3G58450.1p  transcript_id AT3G58450.1  protein_id AT3G58450.1p  transcript_id AT3G58450.1  
At3g58450	chr3:021622032	0.0	W/21622032-21622299,21622425-21622513,21622730-21622848,21622940-21623057	AT3G58450.2  CDS  go_process response to stress|GO:0006950||IEA  go_component cellular_component|GO:0005575||ND  go_process response to stress|GO:0006950||ISS  go_function molecular_function|GO:0003674||ND  product universal stress protein (USP) family protein  note universal stress protein (USP) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: universal stress protein (USP) family protein (TAIR:AT3G11930.1); Has 3137 Blast hits to 3003 proteins in 631 species: Archae - 292; Bacteria - 2139; Metazoa - 49; Fungi - 67; Plants - 427; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).  protein_id AT3G58450.2p  transcript_id AT3G58450.2  protein_id AT3G58450.2p  transcript_id AT3G58450.2  
At3g58460	chr3:021626325	0.0	C/21626325-21626348,21625648-21625813,21625166-21625469,21624890-21624922,21624708-21624799,21624546-21624619,21624294-21624388,21624146-21624215,21623894-21624063,21623771-21623813,21623621-21623680,21623469-21623543,21623374-21623379	AT3G58460.1  CDS  gene_syn ARABIDOPSIS RHOMBOID-LIKE PROTEIN 15, ATRBL15  gene ATRBL15  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ATRBL15 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 15)  note ARABIDOPSIS RHOMBOID-LIKE PROTEIN 15 (ATRBL15); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Peptidase S54, rhomboid (InterPro:IPR002610), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: ATRBL14 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 14); zinc ion binding (TAIR:AT3G17611.1); Has 1918 Blast hits to 1918 proteins in 675 species: Archae - 50; Bacteria - 1104; Metazoa - 148; Fungi - 104; Plants - 162; Viruses - 3; Other Eukaryotes - 347 (source: NCBI BLink).  protein_id AT3G58460.1p  transcript_id AT3G58460.1  protein_id AT3G58460.1p  transcript_id AT3G58460.1  
At3g58470	chr3:021628154	0.0	C/21628154-21628507,21627870-21628028,21627305-21627386,21627070-21627221	AT3G58470.1  CDS  go_process methylation|GO:0032259||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  product methyltransferase/ nucleic acid binding  note methyltransferase/ nucleic acid binding; FUNCTIONS IN: methyltransferase activity, nucleic acid binding; INVOLVED IN: methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: N-6 adenine-specific DNA methylase, conserved site (InterPro:IPR002052); Has 211 Blast hits to 211 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 54; Plants - 27; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT3G58470.1p  transcript_id AT3G58470.1  protein_id AT3G58470.1p  transcript_id AT3G58470.1  
At3g58480	chr3:021629341	0.0	W/21629341-21629344,21629423-21629795,21629880-21629994,21630093-21630158,21630245-21630333,21630417-21630504,21630649-21630888,21630997-21631098,21631203-21631853	AT3G58480.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product calmodulin-binding family protein  note calmodulin-binding family protein; FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: calmodulin-binding family protein (TAIR:AT3G13600.1); Has 253 Blast hits to 197 proteins in 55 species: Archae - 0; Bacteria - 4; Metazoa - 12; Fungi - 85; Plants - 118; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT3G58480.1p  transcript_id AT3G58480.1  protein_id AT3G58480.1p  transcript_id AT3G58480.1  
At3g58490	chr3:021633065	0.0	W/21633065-21633250,21633352-21633447,21633558-21633632,21633718-21633848,21634033-21634136,21634221-21634349,21634435-21634550,21634644-21635057	AT3G58490.1  CDS  go_component membrane|GO:0016020||IEA  go_process response to abscisic acid stimulus|GO:0009737|18557834|IMP  go_function sphingosine-1-phosphate phosphatase activity|GO:0042392|18557834|ISS  go_function phosphoric ester hydrolase activity|GO:0042578||ISS  product phosphatidic acid phosphatase family protein / PAP2 family protein  note phosphatidic acid phosphatase family protein / PAP2 family protein; FUNCTIONS IN: sphingosine-1-phosphate phosphatase activity, phosphoric ester hydrolase activity; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); Has 773 Blast hits to 773 proteins in 254 species: Archae - 11; Bacteria - 397; Metazoa - 113; Fungi - 97; Plants - 18; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).  protein_id AT3G58490.1p  transcript_id AT3G58490.1  protein_id AT3G58490.1p  transcript_id AT3G58490.1  
At3g58490	chr3:021633362	0.0	W/21633362-21633447,21633572-21633632,21633718-21633848,21634033-21634136,21634221-21634349,21634435-21634550,21634644-21635057	AT3G58490.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process response to abscisic acid stimulus|GO:0009737|18557834|IMP  go_function sphingosine-1-phosphate phosphatase activity|GO:0042392|18557834|ISS  go_function phosphoric ester hydrolase activity|GO:0042578||ISS  product phosphatidic acid phosphatase family protein / PAP2 family protein  note phosphatidic acid phosphatase family protein / PAP2 family protein; FUNCTIONS IN: sphingosine-1-phosphate phosphatase activity, phosphoric ester hydrolase activity; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); Has 705 Blast hits to 705 proteins in 229 species: Archae - 5; Bacteria - 346; Metazoa - 111; Fungi - 97; Plants - 18; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).  protein_id AT3G58490.2p  transcript_id AT3G58490.2  protein_id AT3G58490.2p  transcript_id AT3G58490.2  
At3g58500	chr3:021638819	0.0	C/21638819-21638911,21638044-21638100,21637846-21637929,21637521-21637592,21637270-21637341,21636958-21636998,21636535-21636601,21636043-21636234,21635846-21635935,21635655-21635762,21635503-21635568	AT3G58500.1  CDS  gene_syn EP7, PP2A-3, PROTEIN PHOSPHATASE 2A-3, SER/THR PROTEIN PHOSPHATASE  gene PP2A-3  function encodes the third isoform of the catalytic subunit of protein phosphatase 2A.  go_component protein phosphatase type 2A complex|GO:0000159|7948902|TAS  go_component nucleus|GO:0005634|15469496|IDA  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleolus|GO:0005730|15469496|IDA  go_component cytoplasm|GO:0005737|15469496|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process protein amino acid dephosphorylation|GO:0006470|7948902|TAS  go_function protein serine/threonine phosphatase activity|GO:0004722|8382968|ISS  product PP2A-3 (PROTEIN PHOSPHATASE 2A-3); protein serine/threonine phosphatase  note PROTEIN PHOSPHATASE 2A-3 (PP2A-3); FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: nucleolus, nucleus, protein phosphatase type 2A complex, cytoplasm; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: PP2A-4; hydrolase/ protein serine/threonine phosphatase (TAIR:AT2G42500.1); Has 5280 Blast hits to 5150 proteins in 348 species: Archae - 49; Bacteria - 109; Metazoa - 2051; Fungi - 934; Plants - 613; Viruses - 2; Other Eukaryotes - 1522 (source: NCBI BLink).  protein_id AT3G58500.1p  transcript_id AT3G58500.1  protein_id AT3G58500.1p  transcript_id AT3G58500.1  
At3g58510	chr3:021640608	0.0	W/21640608-21641339,21641435-21641518,21641906-21642148,21642417-21642578,21642671-21642784,21642961-21643464	AT3G58510.1  CDS  go_component nucleolus|GO:0005730|15496452|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD box RNA helicase, putative (RH11)  note DEAD box RNA helicase, putative (RH11); FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding; LOCATED IN: nucleolus, peroxisome, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase, putative (TAIR:AT2G42520.1); Has 72024 Blast hits to 41542 proteins in 2080 species: Archae - 541; Bacteria - 19994; Metazoa - 23920; Fungi - 5428; Plants - 9852; Viruses - 629; Other Eukaryotes - 11660 (source: NCBI BLink).  protein_id AT3G58510.1p  transcript_id AT3G58510.1  protein_id AT3G58510.1p  transcript_id AT3G58510.1  
At3g58510	chr3:021640608	0.0	W/21640608-21641339,21641435-21641518,21641906-21642148,21642417-21642578,21642671-21642784,21642961-21643464	AT3G58510.2  CDS  go_component nucleolus|GO:0005730|15496452|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD box RNA helicase, putative (RH11)  note DEAD box RNA helicase, putative (RH11); FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding; LOCATED IN: nucleolus, peroxisome, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase, putative (TAIR:AT2G42520.1); Has 72024 Blast hits to 41542 proteins in 2080 species: Archae - 541; Bacteria - 19994; Metazoa - 23920; Fungi - 5428; Plants - 9852; Viruses - 629; Other Eukaryotes - 11660 (source: NCBI BLink).  protein_id AT3G58510.2p  transcript_id AT3G58510.2  protein_id AT3G58510.2p  transcript_id AT3G58510.2  
At3g58510	chr3:021640608	0.0	W/21640608-21641339,21641435-21641518,21641906-21642148,21642417-21642578,21642671-21642784,21642961-21643464	AT3G58510.3  CDS  go_component nucleolus|GO:0005730|15496452|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD box RNA helicase, putative (RH11)  note DEAD box RNA helicase, putative (RH11); FUNCTIONS IN: helicase activity, ATP binding, nucleic acid binding, ATP-dependent helicase activity; LOCATED IN: nucleolus, peroxisome, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase, putative (TAIR:AT2G42520.1); Has 72024 Blast hits to 41542 proteins in 2080 species: Archae - 541; Bacteria - 19994; Metazoa - 23920; Fungi - 5428; Plants - 9852; Viruses - 629; Other Eukaryotes - 11660 (source: NCBI BLink).  protein_id AT3G58510.3p  transcript_id AT3G58510.3  protein_id AT3G58510.3p  transcript_id AT3G58510.3  
At3g58520	chr3:021645000	0.0	C/21645000-21645277,21643921-21644899	AT3G58520.1  CDS  go_component intracellular|GO:0005622||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  product ubiquitin thiolesterase  note ubiquitin thiolesterase; FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (InterPro:IPR001578); BEST Arabidopsis thaliana protein match is: ubiquitin thiolesterase (TAIR:AT5G48040.1); Has 214 Blast hits to 214 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 214; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G58520.1p  transcript_id AT3G58520.1  protein_id AT3G58520.1p  transcript_id AT3G58520.1  
At3g58520	chr3:021645079	0.0	C/21645079-21645277,21644957-21644999,21643921-21644899	AT3G58520.2  CDS  go_component intracellular|GO:0005622||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  product ubiquitin thiolesterase  note ubiquitin thiolesterase; FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (InterPro:IPR001578); BEST Arabidopsis thaliana protein match is: ubiquitin thiolesterase (TAIR:AT5G48040.1).  protein_id AT3G58520.2p  transcript_id AT3G58520.2  protein_id AT3G58520.2p  transcript_id AT3G58520.2  
At3g58530	chr3:021645759	0.0	W/21645759-21645929,21646019-21646078,21646199-21646282,21646435-21646565,21646649-21646724,21646873-21646943,21647126-21647212,21647303-21647375,21647592-21647659,21647756-21647824,21647912-21648017,21648154-21648219	AT3G58530.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product F-box family protein-related  note F-box family protein-related; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23340.1); Has 6790 Blast hits to 2831 proteins in 176 species: Archae - 0; Bacteria - 446; Metazoa - 3261; Fungi - 702; Plants - 1642; Viruses - 9; Other Eukaryotes - 730 (source: NCBI BLink).  protein_id AT3G58530.1p  transcript_id AT3G58530.1  protein_id AT3G58530.1p  transcript_id AT3G58530.1  
At3g58540	chr3:021649023	0.0	W/21649023-21649226	AT3G58540.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06190.1); Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G58540.1p  transcript_id AT3G58540.1  protein_id AT3G58540.1p  transcript_id AT3G58540.1  
At3g58550	chr3:021649879	0.0	C/21649879-21650233,21649696-21649782,21649506-21649597	AT3G58550.1  CDS  go_process lipid transport|GO:0006869||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 leaf senescence stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: lipid transfer protein-related (TAIR:AT2G44300.1); Has 277 Blast hits to 273 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 277; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G58550.1p  transcript_id AT3G58550.1  protein_id AT3G58550.1p  transcript_id AT3G58550.1  
At3g58560	chr3:021653739	0.0	C/21653739-21653896,21652724-21653462,21652534-21652620,21652349-21652432,21652191-21652277,21652010-21652096,21651813-21651866,21651634-21651725,21651405-21651519,21651142-21651289,21650880-21651037	AT3G58560.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product endonuclease/exonuclease/phosphatase family protein  note endonuclease/exonuclease/phosphatase family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: hydrolase (TAIR:AT3G58580.1); Has 965 Blast hits to 938 proteins in 154 species: Archae - 0; Bacteria - 7; Metazoa - 452; Fungi - 163; Plants - 175; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).  protein_id AT3G58560.1p  transcript_id AT3G58560.1  protein_id AT3G58560.1p  transcript_id AT3G58560.1  
At3g58570	chr3:021657099	0.0	W/21657099-21657815,21657910-21657993,21658341-21658583,21659203-21659370,21659530-21659643,21659738-21660352	AT3G58570.1  CDS  go_component chloroplast|GO:0009507||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD box RNA helicase, putative  note DEAD box RNA helicase, putative; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase, putative (TAIR:AT2G42520.1); Has 67728 Blast hits to 42681 proteins in 2188 species: Archae - 551; Bacteria - 21719; Metazoa - 21903; Fungi - 5394; Plants - 6790; Viruses - 334; Other Eukaryotes - 11037 (source: NCBI BLink).  protein_id AT3G58570.1p  transcript_id AT3G58570.1  protein_id AT3G58570.1p  transcript_id AT3G58570.1  
At3g58580	chr3:021663540	0.0	C/21663540-21663697,21662598-21663345,21662419-21662505,21662254-21662337,21662091-21662177,21661907-21661993,21661744-21661797,21661557-21661648,21661347-21661461,21661110-21661260,21660866-21661014	AT3G58580.1  CDS  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity|GO:0016787||ISS  product hydrolase  note hydrolase; FUNCTIONS IN: hydrolase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein (TAIR:AT3G58560.1); Has 931 Blast hits to 907 proteins in 152 species: Archae - 0; Bacteria - 5; Metazoa - 447; Fungi - 162; Plants - 156; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink).  protein_id AT3G58580.1p  transcript_id AT3G58580.1  protein_id AT3G58580.1p  transcript_id AT3G58580.1  
At3g58590	chr3:021666262	0.0	W/21666262-21668487	AT3G58590.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G02330.1); Has 18209 Blast hits to 4752 proteins in 127 species: Archae - 0; Bacteria - 2; Metazoa - 94; Fungi - 33; Plants - 17747; Viruses - 0; Other Eukaryotes - 333 (source: NCBI BLink).  protein_id AT3G58590.1p  transcript_id AT3G58590.1  protein_id AT3G58590.1p  transcript_id AT3G58590.1  
At3g58600	chr3:021670862	0.0	C/21670862-21670999,21670154-21670185,21669645-21669818,21669526-21669557,21669359-21669449,21669154-21669265,21668746-21669075	AT3G58600.1  CDS  go_component membrane|GO:0016020||IEA  go_process endocytosis|GO:0006897||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: endocytosis; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adaptin ear-binding coat-associated protein 1 NECAP-1 (InterPro:IPR012466); BEST Arabidopsis thaliana protein match is: ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4); ATPase, coupled to transmembrane movement of substances / transporter (TAIR:AT1G03900.1); Has 329 Blast hits to 329 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 191; Fungi - 43; Plants - 52; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT3G58600.1p  transcript_id AT3G58600.1  protein_id AT3G58600.1p  transcript_id AT3G58600.1  
At3g58610	chr3:021671561	0.0	W/21671561-21671857,21671981-21672073,21672343-21672408,21672515-21672655,21672750-21672977,21673082-21673199,21673279-21673418,21673512-21673679,21673768-21673923,21674271-21674639	AT3G58610.1  CDS  go_component cell wall|GO:0005618|16287169|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function catalytic activity|GO:0003824||IEA  go_function ketol-acid reductoisomerase activity|GO:0004455||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function coenzyme binding|GO:0050662||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process branched chain family amino acid biosynthetic process|GO:0009082||ISS  go_function ketol-acid reductoisomerase activity|GO:0004455||ISS  product ketol-acid reductoisomerase  note ketol-acid reductoisomerase; FUNCTIONS IN: coenzyme binding, oxidoreductase activity, binding, ketol-acid reductoisomerase activity, catalytic activity; INVOLVED IN: response to cadmium ion, branched chain family amino acid biosynthetic process; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acetohydroxy acid isomeroreductase, catalytic (InterPro:IPR013116), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), Acetohydroxy acid isomeroreductase C-terminal (InterPro:IPR000506), Ketol-acid reductoisomerase, plant (InterPro:IPR016206), Acetohydroxy acid isomeroreductase (InterPro:IPR013023), NAD(P)-binding (InterPro:IPR016040); Has 5485 Blast hits to 5266 proteins in 1271 species: Archae - 134; Bacteria - 2645; Metazoa - 0; Fungi - 179; Plants - 83; Viruses - 0; Other Eukaryotes - 2444 (source: NCBI BLink).  protein_id AT3G58610.1p  transcript_id AT3G58610.1  protein_id AT3G58610.1p  transcript_id AT3G58610.1  
At3g58610	chr3:021671561	0.0	W/21671561-21671857,21671981-21672073,21672343-21672408,21672515-21672655,21672750-21672977,21673082-21673199,21673279-21673418,21673512-21673679,21673768-21673923,21674271-21674639	AT3G58610.2  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function catalytic activity|GO:0003824||IEA  go_function ketol-acid reductoisomerase activity|GO:0004455||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function coenzyme binding|GO:0050662||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process branched chain family amino acid biosynthetic process|GO:0009082||ISS  go_function ketol-acid reductoisomerase activity|GO:0004455||ISS  product ketol-acid reductoisomerase  note ketol-acid reductoisomerase; FUNCTIONS IN: coenzyme binding, oxidoreductase activity, binding, ketol-acid reductoisomerase activity, catalytic activity; INVOLVED IN: branched chain family amino acid biosynthetic process; LOCATED IN: mitochondrion, apoplast, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acetohydroxy acid isomeroreductase, catalytic (InterPro:IPR013116), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), Acetohydroxy acid isomeroreductase C-terminal (InterPro:IPR000506), Ketol-acid reductoisomerase, plant (InterPro:IPR016206), Acetohydroxy acid isomeroreductase (InterPro:IPR013023), NAD(P)-binding (InterPro:IPR016040); Has 5485 Blast hits to 5266 proteins in 1271 species: Archae - 134; Bacteria - 2645; Metazoa - 0; Fungi - 179; Plants - 83; Viruses - 0; Other Eukaryotes - 2444 (source: NCBI BLink).  protein_id AT3G58610.2p  transcript_id AT3G58610.2  protein_id AT3G58610.2p  transcript_id AT3G58610.2  
At3g58620	chr3:021680397	0.0	W/21680397-21681268,21681339-21681534,21681632-21681813,21681917-21682253,21682329-21682530,21682616-21682722,21682807-21682959	AT3G58620.1  CDS  gene_syn TTL4, Tetratricopetide-repeat Thioredoxin-Like 4  gene TTL4  go_process cell redox homeostasis|GO:0045454||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  product TTL4 (Tetratricopetide-repeat Thioredoxin-Like 4); binding  note Tetratricopetide-repeat Thioredoxin-Like 4 (TTL4); FUNCTIONS IN: binding; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Tetratricopeptide TPR-1 (InterPro:IPR001440), Thioredoxin fold (InterPro:IPR012335), Tetratricopeptide-like helical (InterPro:IPR011990), Thioredoxin domain (InterPro:IPR013766), Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide region (InterPro:IPR013026), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: TTL3 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3); binding / protein binding (TAIR:AT2G42580.1); Has 16554 Blast hits to 9684 proteins in 742 species: Archae - 566; Bacteria - 4295; Metazoa - 4899; Fungi - 1375; Plants - 1338; Viruses - 3; Other Eukaryotes - 4078 (source: NCBI BLink).  protein_id AT3G58620.1p  transcript_id AT3G58620.1  protein_id AT3G58620.1p  transcript_id AT3G58620.1  
At3g58630	chr3:021684847	0.0	C/21684847-21685771,21683928-21683968	AT3G58630.1  CDS  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT5G05550.2); Has 200 Blast hits to 196 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 2; Plants - 172; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G58630.1p  transcript_id AT3G58630.1  protein_id AT3G58630.1p  transcript_id AT3G58630.1  
At3g58640	chr3:021692427	0.0	C/21692427-21692675,21692081-21692284,21691371-21691544,21690929-21691188,21690662-21690781,21690445-21690534,21690253-21690348,21689919-21690011,21689309-21689429,21688659-21688935,21688340-21688463,21688213-21688232,21687966-21688122,21687486-21687774,21687335-21687407,21687153-21687235	AT3G58640.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G31010.1); Has 90893 Blast hits to 89230 proteins in 3468 species: Archae - 59; Bacteria - 7562; Metazoa - 40761; Fungi - 7485; Plants - 18694; Viruses - 477; Other Eukaryotes - 15855 (source: NCBI BLink).  protein_id AT3G58640.1p  transcript_id AT3G58640.1  protein_id AT3G58640.1p  transcript_id AT3G58640.1  
At3g58640	chr3:021692427	0.0	C/21692427-21692675,21692081-21692284,21691371-21691544,21690929-21691188,21690662-21690781,21690445-21690534,21690253-21690348,21689919-21690011,21689309-21689429,21688659-21688935,21688340-21688463,21688213-21688232,21687966-21688122,21687486-21687774,21687335-21687407,21687153-21687235	AT3G58640.2  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G31010.1); Has 90893 Blast hits to 89230 proteins in 3468 species: Archae - 59; Bacteria - 7562; Metazoa - 40761; Fungi - 7485; Plants - 18694; Viruses - 477; Other Eukaryotes - 15855 (source: NCBI BLink).  protein_id AT3G58640.2p  transcript_id AT3G58640.2  protein_id AT3G58640.2p  transcript_id AT3G58640.2  
At3g58650	chr3:021699111	0.0	C/21699111-21699219,21698973-21699031,21697288-21698856,21697069-21697192,21696349-21696950	AT3G58650.1  CDS  go_component plasma membrane|GO:0005886|14506206|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26910.1); Has 2089 Blast hits to 1224 proteins in 188 species: Archae - 0; Bacteria - 316; Metazoa - 600; Fungi - 209; Plants - 103; Viruses - 4; Other Eukaryotes - 857 (source: NCBI BLink).  protein_id AT3G58650.1p  transcript_id AT3G58650.1  protein_id AT3G58650.1p  transcript_id AT3G58650.1  
At3g58660	chr3:021701574	0.0	W/21701574-21702914	AT3G58660.1  CDS  go_component nucleolus|GO:0005730|15496452|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process RNA processing|GO:0006396||IEA  go_process translation|GO:0006412||IEA  go_function RNA binding|GO:0003723||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  product 60S ribosomal protein-related  note 60S ribosomal protein-related; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: nucleolus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro:IPR016094); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein-related (TAIR:AT2G42650.1); Has 3347 Blast hits to 2458 proteins in 324 species: Archae - 29; Bacteria - 139; Metazoa - 1389; Fungi - 388; Plants - 380; Viruses - 5; Other Eukaryotes - 1017 (source: NCBI BLink).  protein_id AT3G58660.1p  transcript_id AT3G58660.1  protein_id AT3G58660.1p  transcript_id AT3G58660.1  
At3g58670	chr3:021705212	0.0	C/21705212-21705314,21704847-21704992,21704359-21704512,21704063-21704266,21703693-21703814	AT3G58670.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1637 (InterPro:IPR012864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42670.1); Has 238 Blast hits to 238 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 84; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT3G58670.1p  transcript_id AT3G58670.1  protein_id AT3G58670.1p  transcript_id AT3G58670.1  
At3g58670	chr3:021705212	0.0	C/21705212-21705314,21704847-21704992,21704359-21704512,21704063-21704266,21703693-21703814	AT3G58670.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1637 (InterPro:IPR012864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42670.1); Has 238 Blast hits to 238 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 84; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT3G58670.2p  transcript_id AT3G58670.2  protein_id AT3G58670.2p  transcript_id AT3G58670.2  
At3g58676	chr3:021706819	0.0	C/21706819-21706938	AT3G58676.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G58676.1p  transcript_id AT3G58676.1  protein_id AT3G58676.1p  transcript_id AT3G58676.1  
At3g58680	chr3:021707367	0.0	W/21707367-21707508,21707943-21708026,21708336-21708418,21708506-21708625	AT3G58680.1  CDS  gene_syn ATMBF1B, MBF1B, MULTIPROTEIN BRIDGING FACTOR 1B  gene MBF1B  function One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator. May serve as a bridging factor between a bZIP factor and TBP. Its expression is developmentally regulated.  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleolus|GO:0005730|16283071|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process transcription|GO:0006350||ISS  go_process response to ethylene stimulus|GO:0009723||ISS  go_process positive regulation of transcription|GO:0045941|14988493|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription coactivator activity|GO:0003713|14988493|IGI  go_function transcription coactivator activity|GO:0003713||ISS  product MBF1B (MULTIPROTEIN BRIDGING FACTOR 1B); DNA binding / transcription coactivator  note MULTIPROTEIN BRIDGING FACTOR 1B (MBF1B); FUNCTIONS IN: transcription coactivator activity, DNA binding; INVOLVED IN: response to ethylene stimulus, positive regulation of transcription, transcription; LOCATED IN: nucleolus, nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lambda repressor-like, DNA-binding (InterPro:IPR010982), Multiprotein bridging factor 1, N-terminal (InterPro:IPR013729), Helix-turn-helix type 3 (InterPro:IPR001387); BEST Arabidopsis thaliana protein match is: MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A); DNA binding / transcription coactivator (TAIR:AT2G42680.1); Has 511 Blast hits to 511 proteins in 184 species: Archae - 23; Bacteria - 2; Metazoa - 166; Fungi - 105; Plants - 84; Viruses - 2; Other Eukaryotes - 129 (source: NCBI BLink).  protein_id AT3G58680.1p  transcript_id AT3G58680.1  protein_id AT3G58680.1p  transcript_id AT3G58680.1  
At3g58690	chr3:021709369	0.0	W/21709369-21709522,21709706-21709944,21710060-21710195,21710396-21710654,21710752-21710884,21710965-21711246	AT3G58690.1  CDS  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G54820.1); Has 86522 Blast hits to 85517 proteins in 2739 species: Archae - 60; Bacteria - 8012; Metazoa - 37169; Fungi - 6786; Plants - 19292; Viruses - 369; Other Eukaryotes - 14834 (source: NCBI BLink).  protein_id AT3G58690.1p  transcript_id AT3G58690.1  protein_id AT3G58690.1p  transcript_id AT3G58690.1  
At3g58700	chr3:021711661	0.0	W/21711661-21711663,21711753-21711860,21711955-21711997,21712318-21712513,21712618-21712816	AT3G58700.1  CDS  go_component vacuole|GO:0005773|15215502|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_component cytosolic large ribosomal subunit|GO:0022625||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L11 (RPL11B)  note 60S ribosomal protein L11 (RPL11B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L5 (InterPro:IPR002132); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L11 (RPL11D) (TAIR:AT5G45775.2); Has 5263 Blast hits to 5263 proteins in 1657 species: Archae - 218; Bacteria - 2825; Metazoa - 209; Fungi - 107; Plants - 188; Viruses - 0; Other Eukaryotes - 1716 (source: NCBI BLink).  protein_id AT3G58700.1p  transcript_id AT3G58700.1  protein_id AT3G58700.1p  transcript_id AT3G58700.1  
At3g58710	chr3:021715192	0.0	W/21715192-21715316,21715403-21715549,21716220-21716766	AT3G58710.1  CDS  gene_syn ATWRKY69, RABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 69, WRKY DNA-BINDING PROTEIN 69, WRKY69  gene WRKY69  function member of WRKY Transcription Factor; Group II-e  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY69; transcription factor  note WRKY69; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY65; transcription factor (TAIR:AT1G29280.1); Has 1957 Blast hits to 1674 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1946; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT3G58710.1p  transcript_id AT3G58710.1  protein_id AT3G58710.1p  transcript_id AT3G58710.1  
At3g58710	chr3:021715192	0.0	W/21715192-21715316,21715406-21715549,21716220-21716766	AT3G58710.2  CDS  gene_syn ATWRKY69, RABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 69, WRKY DNA-BINDING PROTEIN 69, WRKY69  gene WRKY69  function member of WRKY Transcription Factor; Group II-e  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY69; transcription factor  note WRKY69; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY65; transcription factor (TAIR:AT1G29280.1); Has 1960 Blast hits to 1677 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1949; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT3G58710.2p  transcript_id AT3G58710.2  protein_id AT3G58710.2p  transcript_id AT3G58710.2  
At3g58720	chr3:021717777	0.0	C/21717777-21717892,21716920-21717520	AT3G58720.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G13430.2); Has 7323 Blast hits to 7305 proteins in 240 species: Archae - 0; Bacteria - 6; Metazoa - 2478; Fungi - 661; Plants - 2745; Viruses - 82; Other Eukaryotes - 1351 (source: NCBI BLink).  protein_id AT3G58720.1p  transcript_id AT3G58720.1  protein_id AT3G58720.1p  transcript_id AT3G58720.1  
At3g58730	chr3:021718495	0.0	C/21718495-21719280	AT3G58730.1  CDS  gene_syn VHA-D  go_component plant-type vacuole|GO:0000325|16618929|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||IEA  go_function proton-transporting ATPase activity, rotational mechanism|GO:0046961||IEA  go_component vacuolar membrane|GO:0005774|16618929|IDA  product vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD)  note vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, membrane, plant-type vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, V1/A1 complex, subunit D (InterPro:IPR002699); Has 941 Blast hits to 939 proteins in 387 species: Archae - 165; Bacteria - 273; Metazoa - 208; Fungi - 93; Plants - 54; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink).  protein_id AT3G58730.1p  transcript_id AT3G58730.1  protein_id AT3G58730.1p  transcript_id AT3G58730.1  
At3g58740	chr3:021723490	0.0	C/21723490-21723726,21723187-21723367,21722939-21723024,21722760-21722864,21722623-21722685,21722439-21722548,21722233-21722352,21721999-21722148,21721803-21721923,21721605-21721702,21721380-21721491,21721066-21721125	AT3G58740.1  CDS  gene_syn CITRATE SYNTHASE 1, CSY1  gene CSY1  function Encodes a peroxisomal citrate synthase that is expressed in siliques and developing seeds.  go_process cellular carbohydrate metabolic process|GO:0044262||IEA  go_function transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer|GO:0046912||IEA  go_component peroxisome|GO:0005777|15923350|ISS  go_process tricarboxylic acid cycle|GO:0006099||ISS  go_function citrate (SI)-synthase activity|GO:0004108||ISS  product CSY1 (CITRATE SYNTHASE 1); citrate (SI)-synthase/ transferase, transferring acyl groups, acyl groups converted into alkyl on transfer  note CITRATE SYNTHASE 1 (CSY1); FUNCTIONS IN: citrate (SI)-synthase activity, transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer; INVOLVED IN: cellular carbohydrate metabolic process, tricarboxylic acid cycle; LOCATED IN: peroxisome; EXPRESSED IN: fruit; CONTAINS InterPro DOMAIN/s: Citrate synthase-like, large alpha subdomain (InterPro:IPR016142), Citrate synthase-like (InterPro:IPR002020), Citrate synthase-like, core (InterPro:IPR016141); BEST Arabidopsis thaliana protein match is: CSY2 (citrate synthase 2); citrate (SI)-synthase (TAIR:AT3G58750.1); Has 9431 Blast hits to 9431 proteins in 2017 species: Archae - 111; Bacteria - 5028; Metazoa - 247; Fungi - 214; Plants - 95; Viruses - 0; Other Eukaryotes - 3736 (source: NCBI BLink).  protein_id AT3G58740.1p  transcript_id AT3G58740.1  protein_id AT3G58740.1p  transcript_id AT3G58740.1  
At3g58750	chr3:021727213	0.0	C/21727213-21727458,21726901-21727081,21726670-21726755,21726277-21726381,21726123-21726185,21725924-21726033,21725646-21725765,21725418-21725567,21725206-21725326,21724998-21725095,21724779-21724902,21724564-21724704	AT3G58750.1  CDS  gene_syn CSY2, citrate synthase 2  gene CSY2  function Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development.  go_component peroxisome|GO:0005777|15923350|IDA  go_process tricarboxylic acid cycle|GO:0006099||ISS  go_process fatty acid beta-oxidation|GO:0006635|15923350|IGI  go_function citrate (SI)-synthase activity|GO:0004108|15923350|IGI  go_function citrate (SI)-synthase activity|GO:0004108||ISS  product CSY2 (citrate synthase 2); citrate (SI)-synthase  note citrate synthase 2 (CSY2); FUNCTIONS IN: citrate (SI)-synthase activity; INVOLVED IN: fatty acid beta-oxidation, tricarboxylic acid cycle; LOCATED IN: peroxisome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Citrate synthase, type II (InterPro:IPR010953), Citrate synthase-like, large alpha subdomain (InterPro:IPR016142), Citrate synthase-like (InterPro:IPR002020), Citrate synthase-like, core (InterPro:IPR016141); BEST Arabidopsis thaliana protein match is: CSY3 (citrate synthase 3); citrate (SI)-synthase (TAIR:AT2G42790.1); Has 9667 Blast hits to 9665 proteins in 2018 species: Archae - 111; Bacteria - 5064; Metazoa - 281; Fungi - 216; Plants - 98; Viruses - 0; Other Eukaryotes - 3897 (source: NCBI BLink).  protein_id AT3G58750.1p  transcript_id AT3G58750.1  protein_id AT3G58750.1p  transcript_id AT3G58750.1  
At3g58760	chr3:021728756	0.0	W/21728756-21729106,21729296-21729370,21729461-21729556,21729651-21729736,21729816-21729936,21730287-21730366,21730511-21730573,21730685-21730806,21730993-21731078,21731212-21731333,21731425-21731536,21731639-21731740	AT3G58760.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process regulation of signal transduction|GO:0009966||IEA  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  product ankyrin protein kinase, putative  note ankyrin protein kinase, putative; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: regulation of signal transduction, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Integrin-linked protein kinase (InterPro:IPR016253), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin protein kinase, putative (TAIR:AT4G18950.1); Has 127171 Blast hits to 99579 proteins in 3379 species: Archae - 130; Bacteria - 9433; Metazoa - 60680; Fungi - 8923; Plants - 19074; Viruses - 812; Other Eukaryotes - 28119 (source: NCBI BLink).  protein_id AT3G58760.1p  transcript_id AT3G58760.1  protein_id AT3G58760.1p  transcript_id AT3G58760.1  
At3g58770	chr3:021732520	0.0	W/21732520-21732551,21732647-21732989,21733243-21735183	AT3G58770.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 20 Blast hits to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G58770.1p  transcript_id AT3G58770.1  protein_id AT3G58770.1p  transcript_id AT3G58770.1  
At3g58780	chr3:021739150	0.0	W/21739150-21739376,21740675-21740756,21740910-21740971,21741101-21741200,21741300-21741341,21741425-21741466,21741575-21741766	AT3G58780.1  CDS  gene_syn AGAMOUS LIKE 1, AGL1, SHATTERPROOF 1, SHP1  gene SHP1  function One of two genes (SHP1 and SHP2) that are required for fruit dehiscence. The two genes control dehiscence zone differentiation and promote the lignification of adjacent cells.  go_component nucleus|GO:0005634||IEA  go_process fruit dehiscence|GO:0010047|10783890|IMP  go_process carpel development|GO:0048440|14555696|IMP  go_process ovule development|GO:0048481|14555696|IMP  go_function DNA binding|GO:0003677|10783890|ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function protein binding|GO:0005515|14555696|IPI  product SHP1 (SHATTERPROOF 1); DNA binding / protein binding / transcription factor  note SHATTERPROOF 1 (SHP1); FUNCTIONS IN: protein binding, transcription factor activity, DNA binding; INVOLVED IN: fruit dehiscence, ovule development, carpel development; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: SHP2 (SHATTERPROOF 2); protein binding / transcription factor (TAIR:AT2G42830.1); Has 5287 Blast hits to 5283 proteins in 695 species: Archae - 0; Bacteria - 0; Metazoa - 570; Fungi - 209; Plants - 4453; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT3G58780.1p  transcript_id AT3G58780.1  protein_id AT3G58780.1p  transcript_id AT3G58780.1  
At3g58780	chr3:021739150	0.0	W/21739150-21739376,21740696-21740756,21740910-21740971,21741101-21741200,21741300-21741341,21741425-21741466,21741575-21741766	AT3G58780.2  CDS  gene_syn AGAMOUS LIKE 1, AGL1, SHATTERPROOF 1, SHP1  gene SHP1  function One of two genes (SHP1 and SHP2) that are required for fruit dehiscence. The two genes control dehiscence zone differentiation and promote the lignification of adjacent cells.  go_component nucleus|GO:0005634||IEA  go_process fruit dehiscence|GO:0010047|10783890|IMP  go_process carpel development|GO:0048440|14555696|IMP  go_process ovule development|GO:0048481|14555696|IMP  go_function DNA binding|GO:0003677|10783890|ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function protein binding|GO:0005515|14555696|IPI  product SHP1 (SHATTERPROOF 1); DNA binding / protein binding / transcription factor  note SHATTERPROOF 1 (SHP1); FUNCTIONS IN: protein binding, transcription factor activity, DNA binding; INVOLVED IN: fruit dehiscence, ovule development, carpel development; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: SHP2 (SHATTERPROOF 2); protein binding / transcription factor (TAIR:AT2G42830.1); Has 5241 Blast hits to 5238 proteins in 691 species: Archae - 0; Bacteria - 0; Metazoa - 554; Fungi - 209; Plants - 4422; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT3G58780.2p  transcript_id AT3G58780.2  protein_id AT3G58780.2p  transcript_id AT3G58780.2  
At3g58795	chr3:021745707	0.0	W/21745707-21746545	AT3G58795.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT3G58790  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G58795.1  
At3g58790	chr3:021745735	0.0	C/21745735-21745972,21745386-21745429,21744130-21744297,21743222-21743806,21742832-21743134,21742455-21742739	AT3G58790.1  CDS  gene_syn GAUT15, Galacturonosyltransferase 15  gene GAUT15  function Encodes a protein with putative galacturonosyltransferase activity.  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS  product GAUT15 (Galacturonosyltransferase 15); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note Galacturonosyltransferase 15 (GAUT15); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: GAUT14 (Galacturonosyltransferase 14); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT5G15470.1); Has 769 Blast hits to 765 proteins in 137 species: Archae - 0; Bacteria - 196; Metazoa - 120; Fungi - 6; Plants - 430; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT3G58790.1p  transcript_id AT3G58790.1  protein_id AT3G58790.1p  transcript_id AT3G58790.1  
At3g58800	chr3:021748562	0.0	W/21748562-21749596	AT3G58800.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; Has 46 Blast hits to 46 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 17; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G58800.1p  transcript_id AT3G58800.1  protein_id AT3G58800.1p  transcript_id AT3G58800.1  
At3g58810	chr3:021750551	0.0	W/21750551-21750595,21750713-21751849	AT3G58810.2  CDS  gene_syn ATMTPA2, METAL TOLERANCE PROTEIN 3, METAL TOLERANCE PROTEIN A2, MTP3, MTPA2  gene MTPA2  function Member of Zinc transporter (ZAT) family. Contributes to basic cellular Zn tolerance and controls Zn partitioning, particularly under conditions of high rates of Zn influx into the root symplasm. Localizes to the vacuolar membrane.  go_component plant-type vacuole membrane|GO:0009705|16709200|IDA  go_process zinc ion transport|GO:0006829||ISS  go_process response to zinc ion|GO:0010043|16709200|IEP  go_process detoxification of cobalt ion|GO:0010299|16709200|IGI  go_process detoxification of zinc ion|GO:0010312|16709200|IGI  go_process detoxification of zinc ion|GO:0010312|16709200|IMP  go_function zinc ion transmembrane transporter activity|GO:0005385||ISS  go_function inorganic anion transmembrane transporter activity|GO:0015103||ISS  go_function efflux transmembrane transporter activity|GO:0015562||ISS  product MTPA2 (METAL TOLERANCE PROTEIN A2); efflux transmembrane transporter/ inorganic anion transmembrane transporter/ zinc ion transmembrane transporter  note METAL TOLERANCE PROTEIN A2 (MTPA2); FUNCTIONS IN: zinc ion transmembrane transporter activity, efflux transmembrane transporter activity, inorganic anion transmembrane transporter activity; INVOLVED IN: response to zinc ion, zinc ion transport, detoxification of cobalt ion, detoxification of zinc ion; LOCATED IN: plant-type vacuole membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: ZAT (ZINC TRANSPORTER OF ARABIDOPSIS THALIANA); inorganic anion transmembrane transporter/ metal ion transmembrane transporter/ zinc ion transmembrane transporter (TAIR:AT2G46800.2); Has 7121 Blast hits to 5492 proteins in 1205 species: Archae - 95; Bacteria - 3562; Metazoa - 1855; Fungi - 493; Plants - 221; Viruses - 6; Other Eukaryotes - 889 (source: NCBI BLink).  protein_id AT3G58810.2p  transcript_id AT3G58810.2  protein_id AT3G58810.2p  transcript_id AT3G58810.2  
At3g58810	chr3:021750551	0.0	W/21750551-21751849	AT3G58810.1  CDS  gene_syn ATMTPA2, METAL TOLERANCE PROTEIN 3, METAL TOLERANCE PROTEIN A2, MTP3, MTPA2  gene MTPA2  function Member of Zinc transporter (ZAT) family. Contributes to basic cellular Zn tolerance and controls Zn partitioning, particularly under conditions of high rates of Zn influx into the root symplasm. Localizes to the vacuolar membrane.  go_component vacuole|GO:0005773|15215502|IDA  go_component plant-type vacuole membrane|GO:0009705|16709200|IDA  go_process zinc ion transport|GO:0006829||ISS  go_process response to zinc ion|GO:0010043|16709200|IEP  go_process detoxification of cobalt ion|GO:0010299|16709200|IGI  go_process detoxification of zinc ion|GO:0010312|16709200|IGI  go_process detoxification of zinc ion|GO:0010312|16709200|IMP  go_function zinc ion transmembrane transporter activity|GO:0005385||ISS  go_function inorganic anion transmembrane transporter activity|GO:0015103||ISS  go_function efflux transmembrane transporter activity|GO:0015562||ISS  product MTPA2 (METAL TOLERANCE PROTEIN A2); efflux transmembrane transporter/ inorganic anion transmembrane transporter/ zinc ion transmembrane transporter  note METAL TOLERANCE PROTEIN A2 (MTPA2); FUNCTIONS IN: zinc ion transmembrane transporter activity, efflux transmembrane transporter activity, inorganic anion transmembrane transporter activity; INVOLVED IN: response to zinc ion, zinc ion transport, detoxification of cobalt ion, detoxification of zinc ion; LOCATED IN: plant-type vacuole membrane, vacuole; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: ZAT (ZINC TRANSPORTER OF ARABIDOPSIS THALIANA); inorganic anion transmembrane transporter/ metal ion transmembrane transporter/ zinc ion transmembrane transporter (TAIR:AT2G46800.2); Has 7122 Blast hits to 5492 proteins in 1205 species: Archae - 95; Bacteria - 3562; Metazoa - 1857; Fungi - 491; Plants - 222; Viruses - 6; Other Eukaryotes - 889 (source: NCBI BLink).  protein_id AT3G58810.1p  transcript_id AT3G58810.1  protein_id AT3G58810.1p  transcript_id AT3G58810.1  
At3g58820	chr3:021752960	0.0	W/21752960-21753416,21753476-21753564,21753685-21753879,21754032-21754172,21754256-21754615	AT3G58820.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G59000.1); Has 1133 Blast hits to 1091 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G58820.1p  transcript_id AT3G58820.1  protein_id AT3G58820.1p  transcript_id AT3G58820.1  
At3g58830	chr3:021755983	0.0	C/21755983-21756637,21755797-21755874,21755636-21755709,21755441-21755548,21755172-21755288	AT3G58830.1  CDS  go_component chloroplast|GO:0009507||IEA  go_function catalytic activity|GO:0003824||ISS  product haloacid dehalogenase (HAD) superfamily protein  note haloacid dehalogenase (HAD) superfamily protein; FUNCTIONS IN: catalytic activity; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIIA (InterPro:IPR006549), HAD-superfamily phosphatase, subfamily IIIA (InterPro:IPR010021); Has 543 Blast hits to 539 proteins in 256 species: Archae - 0; Bacteria - 409; Metazoa - 0; Fungi - 55; Plants - 20; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT3G58830.1p  transcript_id AT3G58830.1  protein_id AT3G58830.1p  transcript_id AT3G58830.1  
At3g58840	chr3:021757499	0.0	C/21757499-21758455	AT3G58840.1  CDS  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  product unknown protein  note LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT1G06530.1); Has 122842 Blast hits to 54311 proteins in 2061 species: Archae - 1832; Bacteria - 13809; Metazoa - 62057; Fungi - 8845; Plants - 4054; Viruses - 676; Other Eukaryotes - 31569 (source: NCBI BLink).  protein_id AT3G58840.1p  transcript_id AT3G58840.1  protein_id AT3G58840.1p  transcript_id AT3G58840.1  
At3g58840	chr3:021757499	0.0	C/21757499-21758455	AT3G58840.2  CDS  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  product unknown protein  note LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT1G06530.1); Has 122842 Blast hits to 54311 proteins in 2061 species: Archae - 1832; Bacteria - 13809; Metazoa - 62057; Fungi - 8845; Plants - 4054; Viruses - 676; Other Eukaryotes - 31569 (source: NCBI BLink).  protein_id AT3G58840.2p  transcript_id AT3G58840.2  protein_id AT3G58840.2p  transcript_id AT3G58840.2  
At3g58850	chr3:021759562	0.0	C/21759562-21759918	AT3G58850.1  CDS  gene_syn HLH2, PAR2, PHY RAPIDLY REGULATED 2  gene PAR2  function Encodes PHYTOCHROME RAPIDLY REGULATED2 (PAR2), an atypical basic helix-loop-helix (bHLP) protein. Closely related to PAR1 (At2g42870). Up regulated after simulated shade perception. Acts in the nucleus to control plant development and as a negative regulator of shade avoidance response. Functions as transcriptional repressor of auxin-responsive genes SAUR15 (AT4G38850) and SAUR68 (AT1G29510).  go_component nucleus|GO:0005634|17948056|IDA  go_process shade avoidance|GO:0009641|17948056|IEP  go_process shade avoidance|GO:0009641|17948056|IMP  go_process developmental process|GO:0032502|17948056|IMP  product PAR2 (PHY RAPIDLY REGULATED 2)  note PHY RAPIDLY REGULATED 2 (PAR2); INVOLVED IN: developmental process, shade avoidance; LOCATED IN: nucleus; BEST Arabidopsis thaliana protein match is: PAR1 (PHY RAPIDLY REGULATED 1) (TAIR:AT2G42870.1); Has 41 Blast hits to 41 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G58850.1p  transcript_id AT3G58850.1  protein_id AT3G58850.1p  transcript_id AT3G58850.1  
At3g58860	chr3:021764416	0.0	C/21764416-21765306,21764166-21764306,21763742-21764083	AT3G58860.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, sperm cell, leaf whorl, cotyledon, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G59000.1); Has 1372 Blast hits to 1335 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1372; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G58860.1p  transcript_id AT3G58860.1  protein_id AT3G58860.1p  transcript_id AT3G58860.1  
At3g58865	chr3:021765879	0.0	W/21765879-21766823	AT3G58865.1  mRNA_TE_gene  pseudo  gene_syn SADHU NON-CODING RETROTRANSPOSON, SADHU10-1  gene SADHU10-1  function Member of Sadhu non-coding retrotransposon family  note Transposable element gene  
At3g58877	chr3:021768188	0.0	C/21768188-21768367	AT3G58877.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G58877.1p  transcript_id AT3G58877.1  protein_id AT3G58877.1p  transcript_id AT3G58877.1  
At3g58880	chr3:021769253	0.0	C/21769253-21770167,21768888-21769028,21768485-21768793	AT3G58880.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G59000.1); Has 1422 Blast hits to 1382 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 1418; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G58880.1p  transcript_id AT3G58880.1  protein_id AT3G58880.1p  transcript_id AT3G58880.1  
At3g58890	chr3:021771046	0.0	W/21771046-21771097,21771274-21771336,21771409-21771746,21771963-21772103,21772183-21772362,21772470-21772577	AT3G58890.1  CDS  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product syntaxin-related family protein  note syntaxin-related family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; CONTAINS InterPro DOMAIN/s: FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G58950.1); Has 309 Blast hits to 302 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 309; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G58890.1p  transcript_id AT3G58890.1  protein_id AT3G58890.1p  transcript_id AT3G58890.1  
At3g58900	chr3:021773030	0.0	W/21773030-21773965,21774066-21774074	AT3G58900.3  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product F-box family protein  note F-box family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G58860.1); Has 1273 Blast hits to 1244 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 0; Plants - 1262; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G58900.3p  transcript_id AT3G58900.3  protein_id AT3G58900.3p  transcript_id AT3G58900.3  
At3g58900	chr3:021773030	0.0	W/21773030-21774013	AT3G58900.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product F-box family protein  note F-box family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G58860.1); Has 1272 Blast hits to 1243 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 0; Plants - 1261; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G58900.1p  transcript_id AT3G58900.1  protein_id AT3G58900.1p  transcript_id AT3G58900.1  
At3g58900	chr3:021773030	0.0	W/21773030-21774013	AT3G58900.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product F-box family protein  note F-box family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G58860.1); Has 1272 Blast hits to 1243 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 0; Plants - 1261; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G58900.2p  transcript_id AT3G58900.2  protein_id AT3G58900.2p  transcript_id AT3G58900.2  
At3g58910	chr3:021775982	0.0	C/21775982-21776079,21775306-21775852	AT3G58910.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G59000.1); Has 501 Blast hits to 392 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 501; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G58910.1p  transcript_id AT3G58910.1  protein_id AT3G58910.1p  transcript_id AT3G58910.1  
At3g58920	chr3:021776293	0.0	W/21776293-21777240,21777421-21777570,21777674-21777988	AT3G58920.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G58980.1); Has 1008 Blast hits to 976 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1008; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G58920.1p  transcript_id AT3G58920.1  protein_id AT3G58920.1p  transcript_id AT3G58920.1  
At3g58930	chr3:021779049	0.0	C/21779049-21780014,21778823-21778963,21778381-21778722	AT3G58930.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G58940.1); Has 1181 Blast hits to 1147 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1181; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G58930.1p  transcript_id AT3G58930.1  protein_id AT3G58930.1p  transcript_id AT3G58930.1  
At3g58940	chr3:021782443	0.0	C/21782443-21783213,21782249-21782350,21782020-21782160,21781571-21781927,21781002-21781487	AT3G58940.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G58930.1); Has 1219 Blast hits to 1191 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 1211; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G58940.1p  transcript_id AT3G58940.1  protein_id AT3G58940.1p  transcript_id AT3G58940.1  
At3g58950	chr3:021785558	0.0	C/21785558-21785840,21784923-21785404,21784549-21784689,21784116-21784463	AT3G58950.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G59000.1); Has 1005 Blast hits to 967 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 1001; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G58950.1p  transcript_id AT3G58950.1  protein_id AT3G58950.1p  transcript_id AT3G58950.1  
At3g58960	chr3:021787893	0.0	C/21787893-21788807,21787596-21787736,21787146-21787517	AT3G58960.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G58980.1); Has 1105 Blast hits to 1069 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1103; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G58960.1p  transcript_id AT3G58960.1  protein_id AT3G58960.1p  transcript_id AT3G58960.1  
At3g58970	chr3:021790836	0.0	C/21790836-21791163,21790309-21790724,21789659-21790225	AT3G58970.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process metal ion transport|GO:0030001||IEA  go_function metal ion transmembrane transporter activity|GO:0046873||IEA  go_component membrane|GO:0016020||ISS  go_process metal ion transport|GO:0030001||ISS  go_function metal ion transmembrane transporter activity|GO:0046873||ISS  product magnesium transporter CorA-like family protein  note magnesium transporter CorA-like family protein; FUNCTIONS IN: metal ion transmembrane transporter activity; INVOLVED IN: metal ion transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mg2+ transporter protein, CorA-like (InterPro:IPR002523); BEST Arabidopsis thaliana protein match is: magnesium transporter CorA-like family protein (MRS2-6) (TAIR:AT4G28580.1); Has 487 Blast hits to 476 proteins in 123 species: Archae - 2; Bacteria - 17; Metazoa - 63; Fungi - 134; Plants - 201; Viruses - 2; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT3G58970.1p  transcript_id AT3G58970.1  protein_id AT3G58970.1p  transcript_id AT3G58970.1  
At3g58975	chr3:021792142	0.0	C/21792142-21794029	AT3G58975.1  pseudogenic_transcript  pseudo  function pseudogene of F-box family protein  note expressed protein  
At3g58980	chr3:021796098	0.0	C/21796098-21797006,21795722-21795871,21795359-21795619,21794445-21794909	AT3G58980.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G58920.1); Has 1321 Blast hits to 1026 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1320; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G58980.1p  transcript_id AT3G58980.1  protein_id AT3G58980.1p  transcript_id AT3G58980.1  
At3g58990	chr3:021797524	0.0	C/21797524-21798285	AT3G58990.1  CDS  go_component 3-isopropylmalate dehydratase complex|GO:0009316||IEA  go_component chloroplast|GO:0009507||IEA  go_process metabolic process|GO:0008152||IEA  go_process leucine biosynthetic process|GO:0009098||IEA  go_function 3-isopropylmalate dehydratase activity|GO:0003861||IEA  go_process metabolic process|GO:0008152||ISS  go_function hydro-lyase activity|GO:0016836||ISS  product aconitase C-terminal domain-containing protein  note aconitase C-terminal domain-containing protein; FUNCTIONS IN: hydro-lyase activity, 3-isopropylmalate dehydratase activity; INVOLVED IN: leucine biosynthetic process, metabolic process; LOCATED IN: 3-isopropylmalate dehydratase complex, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: 3-isopropylmalate dehydratase, small subunit (InterPro:IPR012305), Aconitase A/isopropylmalate dehydratase small subunit, swivel (InterPro:IPR000573), Aconitase/3-isopropylmalate dehydratase, swivel (InterPro:IPR015928), Aconitase-like core (InterPro:IPR015937); BEST Arabidopsis thaliana protein match is: aconitase C-terminal domain-containing protein (TAIR:AT2G43090.1); Has 6188 Blast hits to 6188 proteins in 1286 species: Archae - 227; Bacteria - 3055; Metazoa - 1; Fungi - 250; Plants - 45; Viruses - 0; Other Eukaryotes - 2610 (source: NCBI BLink).  protein_id AT3G58990.1p  transcript_id AT3G58990.1  protein_id AT3G58990.1p  transcript_id AT3G58990.1  
At3g59000	chr3:021799757	0.0	W/21799757-21800120,21800559-21800695,21800918-21801058,21801141-21801536	AT3G59000.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G58930.1); Has 1455 Blast hits to 1181 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1455; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G59000.2p  transcript_id AT3G59000.2  protein_id AT3G59000.2p  transcript_id AT3G59000.2  
At3g59000	chr3:021799757	0.0	W/21799757-21800695,21800918-21801058,21801141-21801536	AT3G59000.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52650.1); Has 1310 Blast hits to 1276 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1310; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G59000.1p  transcript_id AT3G59000.1  protein_id AT3G59000.1p  transcript_id AT3G59000.1  
At3g59010	chr3:021804174	0.0	C/21804174-21805098,21803015-21803679	AT3G59010.1  CDS  go_component cell wall|GO:0005618||IEA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase inhibitor (InterPro:IPR006501), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: ATPMEPCRD; enzyme inhibitor/ pectinesterase (TAIR:AT2G43050.1); Has 1273 Blast hits to 1240 proteins in 183 species: Archae - 0; Bacteria - 250; Metazoa - 1; Fungi - 133; Plants - 888; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G59010.1p  transcript_id AT3G59010.1  protein_id AT3G59010.1p  transcript_id AT3G59010.1  
At3g59020	chr3:021817326	0.0	C/21817326-21817418,21816976-21817108,21816801-21816888,21816448-21816597,21815760-21815922,21815406-21815590,21815143-21815316,21814643-21814788,21814439-21814562,21814164-21814344,21813640-21813799,21813469-21813510,21813270-21813388,21812985-21813183,21812721-21812852,21812506-21812609,21812194-21812373,21811923-21812062,21811684-21811823,21811460-21811605,21811225-21811351,21810973-21811136	AT3G59020.1  CDS  go_component nucleus|GO:0005634||IEA  go_component nuclear pore|GO:0005643||IEA  go_component cytoplasm|GO:0005737||IEA  go_process protein import into nucleus, docking|GO:0000059||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function binding|GO:0005488||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component nucleus|GO:0005634||ISS  go_component nuclear pore|GO:0005643||ISS  go_component cytoplasm|GO:0005737||ISS  go_process protein import into nucleus, docking|GO:0000059||ISS  go_function protein transporter activity|GO:0008565||ISS  product binding / protein transporter  note binding / protein transporter; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Exportin-1/Importin-beta-like (InterPro:IPR013598), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2); binding / protein transporter (TAIR:AT2G31660.1); Has 7617 Blast hits to 4624 proteins in 349 species: Archae - 36; Bacteria - 516; Metazoa - 2529; Fungi - 1314; Plants - 472; Viruses - 183; Other Eukaryotes - 2567 (source: NCBI BLink).  protein_id AT3G59020.1p  transcript_id AT3G59020.1  protein_id AT3G59020.1p  transcript_id AT3G59020.1  
At3g59020	chr3:021817326	0.0	C/21817326-21817418,21816976-21817108,21816801-21816888,21816448-21816597,21815760-21815922,21815406-21815590,21815143-21815316,21814643-21814788,21814439-21814562,21814164-21814344,21813640-21813799,21813469-21813510,21813270-21813388,21812985-21813183,21812721-21812852,21812506-21812609,21812194-21812373,21811923-21812062,21811684-21811823,21811460-21811608,21811225-21811351,21810973-21811136	AT3G59020.2  CDS  go_component nucleus|GO:0005634||IEA  go_component nuclear pore|GO:0005643||IEA  go_component cytoplasm|GO:0005737||IEA  go_process protein import into nucleus, docking|GO:0000059||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function binding|GO:0005488||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component nucleus|GO:0005634||ISS  go_component nuclear pore|GO:0005643||ISS  go_component cytoplasm|GO:0005737||ISS  go_process protein import into nucleus, docking|GO:0000059||ISS  go_function protein transporter activity|GO:0008565||ISS  product binding / protein transporter  note binding / protein transporter; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Exportin-1/Importin-beta-like (InterPro:IPR013598), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2); binding / protein transporter (TAIR:AT2G31660.1); Has 8195 Blast hits to 4966 proteins in 380 species: Archae - 40; Bacteria - 609; Metazoa - 2702; Fungi - 1410; Plants - 478; Viruses - 192; Other Eukaryotes - 2764 (source: NCBI BLink).  protein_id AT3G59020.2p  transcript_id AT3G59020.2  protein_id AT3G59020.2p  transcript_id AT3G59020.2  
At3g59030	chr3:021819124	0.0	W/21819124-21819441,21819601-21820145,21820232-21820318,21820391-21820447,21820530-21820768,21820857-21820975,21821061-21821147,21821217-21821288	AT3G59030.1  CDS  gene_syn A. THALIANA TRANSPARENT TESTA, ATTT12, TRANSPARENT TESTA 12, TT12  gene TT12  function Encodes a proton antiporter. Involved in the transportation of proanthocyanidin precursors into the vacuole. In vitro transport experiments showed that cyanidin-3-O-glucoside (anthocyanin) was an effective substrate, whereas the proanthocyanidin precursor epicatechin was not transported. However catechin-3-O-glucoside inhibited anthocyanin transport in a dose-dependent manner suggesting that glycosylated epicatechin is the in vivo substrate. Recessive mutation has strong reduction of proanthocyanidin deposition in vacuoles and has reduced dormancy. Expressed in the endothelium of ovules and developing seeds.  go_component plant-type vacuole membrane|GO:0009705|17601828|IDA  go_component membrane|GO:0016020||ISS  go_process proanthocyanidin biosynthetic process|GO:0010023|17601828|IMP  go_process maintenance of seed dormancy|GO:0010231|11283341|IMP  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  go_function solute:hydrogen antiporter activity|GO:0015299|17601828|IDA  go_function transmembrane transporter activity|GO:0022857|11283341|ISS  product TT12 (TRANSPARENT TESTA 12); antiporter/ solute:hydrogen antiporter/ transmembrane transporter/ transporter  note TRANSPARENT TESTA 12 (TT12); FUNCTIONS IN: antiporter activity, solute:hydrogen antiporter activity, transmembrane transporter activity, transporter activity; INVOLVED IN: maintenance of seed dormancy, proanthocyanidin biosynthetic process; LOCATED IN: plant-type vacuole membrane, membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT3G21690.1); Has 4854 Blast hits to 4819 proteins in 1059 species: Archae - 105; Bacteria - 2920; Metazoa - 122; Fungi - 208; Plants - 708; Viruses - 0; Other Eukaryotes - 791 (source: NCBI BLink).  protein_id AT3G59030.1p  transcript_id AT3G59030.1  protein_id AT3G59030.1p  transcript_id AT3G59030.1  
At3g59040	chr3:021823527	0.0	C/21823527-21823919,21822619-21823158,21822374-21822498,21822179-21822277,21821495-21822110	AT3G59040.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G02860.1); Has 21619 Blast hits to 6147 proteins in 198 species: Archae - 6; Bacteria - 35; Metazoa - 665; Fungi - 581; Plants - 19265; Viruses - 0; Other Eukaryotes - 1067 (source: NCBI BLink).  protein_id AT3G59040.2p  transcript_id AT3G59040.2  protein_id AT3G59040.2p  transcript_id AT3G59040.2  
At3g59040	chr3:021824178	0.0	C/21824178-21824233,21823527-21823842,21822619-21823158,21822374-21822498,21822179-21822277,21821495-21822110	AT3G59040.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G02860.1); Has 21669 Blast hits to 6145 proteins in 198 species: Archae - 6; Bacteria - 35; Metazoa - 665; Fungi - 579; Plants - 19317; Viruses - 0; Other Eukaryotes - 1067 (source: NCBI BLink).  protein_id AT3G59040.1p  transcript_id AT3G59040.1  protein_id AT3G59040.1p  transcript_id AT3G59040.1  
At3g59050	chr3:021827134	0.0	C/21827134-21827173,21826771-21826978,21826563-21826676,21826383-21826470,21826208-21826293,21826013-21826115,21825828-21825925,21825319-21825748,21824932-21825231	AT3G59050.1  CDS  gene_syn ATPAO3, Polyamine oxidase 3  gene ATPAO3  go_component peroxisome|GO:0005777|18583528|IDA  go_process polyamine catabolic process|GO:0006598|18583528|IDA  go_function polyamine oxidase activity|GO:0046592|18583528|IDA  product ATPAO3 (Polyamine oxidase 3); polyamine oxidase  note Polyamine oxidase 3 (ATPAO3); FUNCTIONS IN: polyamine oxidase activity; INVOLVED IN: polyamine catabolic process; LOCATED IN: peroxisome; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), Flavin-containing amine oxidase (InterPro:IPR001613); BEST Arabidopsis thaliana protein match is: ATPAO2 (Polyamine oxidase 2); amine oxidase/ electron carrier/ oxidoreductase (TAIR:AT2G43020.1); Has 4592 Blast hits to 4273 proteins in 665 species: Archae - 87; Bacteria - 1473; Metazoa - 1247; Fungi - 376; Plants - 368; Viruses - 0; Other Eukaryotes - 1041 (source: NCBI BLink).  protein_id AT3G59050.1p  transcript_id AT3G59050.1  protein_id AT3G59050.1p  transcript_id AT3G59050.1  
At3g59052	chr3:021827177	0.0	C/21827177-21827383	AT3G59052.1  CDS  gene_syn CPuORF18, Conserved peptide upstream open reading frame 18  gene CPuORF18  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF18 represents a conserved upstream opening reading frame relative to major ORF AT3G59050.1  product CPuORF18 (Conserved peptide upstream open reading frame 18)  note Conserved peptide upstream open reading frame 18 (CPuORF18); Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G59052.1p  transcript_id AT3G59052.1  protein_id AT3G59052.1p  transcript_id AT3G59052.1  
At3g59060	chr3:021829825	0.0	C/21829825-21829895,21828977-21829703,21828830-21828895,21828386-21828736,21828189-21828302	AT3G59060.1  CDS  gene_syn PHYTOCHROME INTERACTING FACTOR 3-LIKE 6, PHYTOCHROME-INTERACTING FACTOR 5, PIF5, PIL6  gene PIL6  function Encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family. Involved in shade avoidance. Functions as negative regulator of PhyB. Protein levels are modulated by phytochrome B.  go_component nucleus|GO:0005634||IEA  go_process circadian rhythm|GO:0007623|12826627|IEP  go_process red, far-red light phototransduction|GO:0009585|18065691|IMP  go_process ethylene biosynthetic process|GO:0009693|18065691|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700|12826627|ISS  go_function transcription factor activity|GO:0003700||ISS  product PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6); DNA binding / transcription factor  note PHYTOCHROME INTERACTING FACTOR 3-LIKE 6 (PIL6); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: red, far-red light phototransduction, ethylene biosynthetic process, circadian rhythm; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: PIF4 (phytochrome interacting factor 4); DNA binding / protein binding / transcription factor (TAIR:AT2G43010.1); Has 2909 Blast hits to 2909 proteins in 253 species: Archae - 0; Bacteria - 0; Metazoa - 901; Fungi - 97; Plants - 1888; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT3G59060.1p  transcript_id AT3G59060.1  protein_id AT3G59060.1p  transcript_id AT3G59060.1  
At3g59060	chr3:021829825	0.0	C/21829825-21829895,21828977-21829703,21828830-21828895,21828386-21828736,21828189-21828308	AT3G59060.2  CDS  gene_syn PHYTOCHROME INTERACTING FACTOR 3-LIKE 6, PHYTOCHROME-INTERACTING FACTOR 5, PIF5, PIL6  gene PIL6  function Encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family. Involved in shade avoidance. Functions as negative regulator of PhyB. Protein levels are modulated by phytochrome B.  go_component nucleus|GO:0005634||IEA  go_process circadian rhythm|GO:0007623|12826627|IEP  go_process red, far-red light phototransduction|GO:0009585|18065691|IMP  go_process ethylene biosynthetic process|GO:0009693|18065691|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700|12826627|ISS  go_function transcription factor activity|GO:0003700||ISS  product PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6); DNA binding / transcription factor  note PHYTOCHROME INTERACTING FACTOR 3-LIKE 6 (PIL6); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: red, far-red light phototransduction, ethylene biosynthetic process, circadian rhythm; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: PIF4 (phytochrome interacting factor 4); DNA binding / protein binding / transcription factor (TAIR:AT2G43010.1); Has 2891 Blast hits to 2891 proteins in 251 species: Archae - 0; Bacteria - 0; Metazoa - 890; Fungi - 89; Plants - 1888; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT3G59060.2p  transcript_id AT3G59060.2  protein_id AT3G59060.2p  transcript_id AT3G59060.2  
At3g59060	chr3:021829825	0.0	C/21829825-21829895,21828977-21829703,21828830-21828895,21828386-21828736,21828189-21828308	AT3G59060.3  CDS  gene_syn PHYTOCHROME INTERACTING FACTOR 3-LIKE 6, PHYTOCHROME-INTERACTING FACTOR 5, PIF5, PIL6  gene PIL6  function Encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family. Involved in shade avoidance. Functions as negative regulator of PhyB. Protein levels are modulated by phytochrome B.  go_component nucleus|GO:0005634||IEA  go_process circadian rhythm|GO:0007623|12826627|IEP  go_process red, far-red light phototransduction|GO:0009585|18065691|IMP  go_process ethylene biosynthetic process|GO:0009693|18065691|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700|12826627|ISS  go_function transcription factor activity|GO:0003700||ISS  product PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6); DNA binding / transcription factor  note PHYTOCHROME INTERACTING FACTOR 3-LIKE 6 (PIL6); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: red, far-red light phototransduction, ethylene biosynthetic process, circadian rhythm; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: PIF4 (phytochrome interacting factor 4); DNA binding / protein binding / transcription factor (TAIR:AT2G43010.1); Has 2891 Blast hits to 2891 proteins in 251 species: Archae - 0; Bacteria - 0; Metazoa - 890; Fungi - 89; Plants - 1888; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT3G59060.3p  transcript_id AT3G59060.3  protein_id AT3G59060.3p  transcript_id AT3G59060.3  
At3g59060	chr3:021829825	0.0	C/21829825-21829895,21828977-21829703,21828830-21828895,21828386-21828736,21828189-21828308	AT3G59060.4  CDS  gene_syn PHYTOCHROME INTERACTING FACTOR 3-LIKE 6, PHYTOCHROME-INTERACTING FACTOR 5, PIF5, PIL6  gene PIL6  function Encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family. Involved in shade avoidance. Functions as negative regulator of PhyB. Protein levels are modulated by phytochrome B.  go_component nucleus|GO:0005634||IEA  go_process circadian rhythm|GO:0007623|12826627|IEP  go_process red, far-red light phototransduction|GO:0009585|18065691|IMP  go_process ethylene biosynthetic process|GO:0009693|18065691|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700|12826627|ISS  go_function transcription factor activity|GO:0003700||ISS  product PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6); DNA binding / transcription factor  note PHYTOCHROME INTERACTING FACTOR 3-LIKE 6 (PIL6); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: red, far-red light phototransduction, ethylene biosynthetic process, circadian rhythm; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: PIF4 (phytochrome interacting factor 4); DNA binding / protein binding / transcription factor (TAIR:AT2G43010.1); Has 2891 Blast hits to 2891 proteins in 251 species: Archae - 0; Bacteria - 0; Metazoa - 890; Fungi - 89; Plants - 1888; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT3G59060.4p  transcript_id AT3G59060.4  protein_id AT3G59060.4p  transcript_id AT3G59060.4  
At3g59070	chr3:021833309	0.0	C/21833309-21834514,21832364-21832558	AT3G59070.1  CDS  go_component membrane|GO:0016020|10080694|ISS  go_process multicellular organismal development|GO:0007275||ISS  product auxin-responsive protein, putative  note auxin-responsive protein, putative; INVOLVED IN: multicellular organismal development; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF568, DOMON-like (InterPro:IPR007613), DOMON related (InterPro:IPR005018), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT5G48750.1); Has 350 Blast hits to 350 proteins in 61 species: Archae - 0; Bacteria - 4; Metazoa - 80; Fungi - 13; Plants - 243; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT3G59070.1p  transcript_id AT3G59070.1  protein_id AT3G59070.1p  transcript_id AT3G59070.1  
At3g59080	chr3:021836812	0.0	W/21836812-21837436,21837545-21838419	AT3G59080.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_function DNA binding|GO:0003677||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: DNA binding, aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT2G42980.1); Has 1917 Blast hits to 1906 proteins in 199 species: Archae - 0; Bacteria - 2; Metazoa - 512; Fungi - 214; Plants - 1119; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT3G59080.2p  transcript_id AT3G59080.2  protein_id AT3G59080.2p  transcript_id AT3G59080.2  
At3g59080	chr3:021836812	0.0	W/21836812-21838419	AT3G59080.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_function DNA binding|GO:0003677||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: DNA binding, aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT2G42980.1); Has 1899 Blast hits to 1878 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 413; Fungi - 219; Plants - 1155; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).  protein_id AT3G59080.1p  transcript_id AT3G59080.1  protein_id AT3G59080.1p  transcript_id AT3G59080.1  
At3g59090	chr3:021839334	0.0	W/21839334-21839456,21839963-21840013,21840123-21840156,21840248-21840334,21840427-21840478,21840579-21840762,21840848-21840943,21841064-21841124,21841268-21841332,21841425-21841499,21841589-21841664,21841742-21841917,21842325-21842348	AT3G59090.1  CDS  product unknown protein  note EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: TOM1 (TOBAMOVIRUS MULTIPLICATION 1); protein binding (TAIR:AT4G21790.1); Has 115 Blast hits to 115 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 108; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G59090.1p  transcript_id AT3G59090.1  protein_id AT3G59090.1p  transcript_id AT3G59090.1  
At3g59090	chr3:021839334	0.0	W/21839334-21839456,21839963-21840013,21840123-21840156,21840248-21840334,21840427-21840478,21840579-21840762,21840848-21840943,21841064-21841124,21841268-21841332,21841425-21841499,21841589-21841664,21841742-21841917,21842408-21842449	AT3G59090.2  CDS  product unknown protein  note EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: TOM1 (TOBAMOVIRUS MULTIPLICATION 1); protein binding (TAIR:AT4G21790.1); Has 115 Blast hits to 115 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 108; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G59090.2p  transcript_id AT3G59090.2  protein_id AT3G59090.2p  transcript_id AT3G59090.2  
At3g59090	chr3:021839380	0.0	W/21839380-21839456,21839935-21840013,21840123-21840156,21840248-21840334,21840427-21840478,21840579-21840762,21840848-21840943,21841064-21841124,21841268-21841332,21841425-21841499,21841589-21841664,21841742-21841917,21842325-21842348	AT3G59090.3  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: TOM1 (TOBAMOVIRUS MULTIPLICATION 1); protein binding (TAIR:AT4G21790.1); Has 115 Blast hits to 115 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 108; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G59090.3p  transcript_id AT3G59090.3  protein_id AT3G59090.3p  transcript_id AT3G59090.3  
At3g59100	chr3:021843407	0.0	W/21843407-21843617,21843747-21843847,21843942-21844054,21844144-21844231,21844325-21844435,21844535-21844684,21845024-21845113,21845194-21845285,21845402-21845525,21845631-21845768,21845851-21845927,21846007-21846094,21846348-21846470,21846555-21846672,21846779-21847149,21847211-21847263,21847367-21847427,21847520-21847601,21847684-21847733,21847820-21847906,21848034-21848132,21848235-21848329,21848432-21848513,21848744-21848907,21849020-21849143,21849228-21849331,21849439-21849550,21849626-21849777,21849982-21850091,21850179-21850292,21850386-21850454,21850558-21850747,21850818-21850929,21851072-21851194,21851272-21851390,21851501-21851584,21851775-21851887,21851985-21852214,21852308-21853105,21853195-21853245,21853342-21853527,21853615-21853860	AT3G59100.1  CDS  gene_syn ATGSL11, glucan synthase-like 11, gsl11  gene ATGSL11  function encodes a protein similar to callose synthase  go_component 1,3-beta-glucan synthase complex|GO:0000148||IEA  go_component membrane|GO:0016020||IEA  go_process 1,3-beta-glucan biosynthetic process|GO:0006075||IEA  go_component 1,3-beta-glucan synthase complex|GO:0000148||ISS  go_process 1,3-beta-glucan biosynthetic process|GO:0006075||ISS  go_function 1,3-beta-glucan synthase activity|GO:0003843||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product ATGSL11 (glucan synthase-like 11); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups  note glucan synthase-like 11 (ATGSL11); FUNCTIONS IN: transferase activity, transferring glycosyl groups, 1,3-beta-glucan synthase activity; INVOLVED IN: 1,3-beta-glucan biosynthetic process; LOCATED IN: 1,3-beta-glucan synthase complex, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 48 (InterPro:IPR003440); BEST Arabidopsis thaliana protein match is: ATGSL07 (glucan synthase-like 7); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups (TAIR:AT1G06490.1); Has 933 Blast hits to 672 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 61; Fungi - 566; Plants - 274; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT3G59100.1p  transcript_id AT3G59100.1  protein_id AT3G59100.1p  transcript_id AT3G59100.1  
At3g59110	chr3:021855673	0.0	W/21855673-21856343,21856437-21856541,21856666-21856788,21856890-21857060,21857142-21857271,21857359-21857568,21857719-21857847	AT3G59110.1  CDS  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G42960.1); Has 88327 Blast hits to 87200 proteins in 3095 species: Archae - 51; Bacteria - 8334; Metazoa - 38387; Fungi - 6836; Plants - 18968; Viruses - 392; Other Eukaryotes - 15359 (source: NCBI BLink).  protein_id AT3G59110.1p  transcript_id AT3G59110.1  protein_id AT3G59110.1p  transcript_id AT3G59110.1  
At3g59120	chr3:021858482	0.0	C/21858482-21860221,21857876-21857944	AT3G59120.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT2G17600.1); Has 1177 Blast hits to 502 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 41; Fungi - 4; Plants - 1115; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT3G59120.1p  transcript_id AT3G59120.1  protein_id AT3G59120.1p  transcript_id AT3G59120.1  
At3g59130	chr3:021862585	0.0	C/21862585-21862807,21860986-21862085	AT3G59130.1  CDS  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  product unknown protein  note INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT3G59120.1); Has 842 Blast hits to 430 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 833; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G59130.1p  transcript_id AT3G59130.1  protein_id AT3G59130.1p  transcript_id AT3G59130.1  
At3g59140	chr3:021866722	0.0	C/21866722-21868701,21866313-21866633,21866151-21866237,21865495-21866070,21865247-21865411,21864866-21865160,21864570-21864784,21864186-21864491,21864033-21864096,21863705-21863944,21863519-21863631	AT3G59140.1  CDS  gene_syn ATMRP14  gene ATMRP14  function member of MRP subfamily  go_component plasma membrane|GO:0005886|17151019|IDA  go_process transport|GO:0006810||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|11346655|ISS  product ATMRP14; ATPase, coupled to transmembrane movement of substances  note ATMRP14; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATMRP6; ATPase, coupled to transmembrane movement of substances (TAIR:AT3G21250.1); Has 394166 Blast hits to 214113 proteins in 2625 species: Archae - 7376; Bacteria - 280069; Metazoa - 11206; Fungi - 5892; Plants - 3353; Viruses - 19; Other Eukaryotes - 86251 (source: NCBI BLink).  protein_id AT3G59140.1p  transcript_id AT3G59140.1  protein_id AT3G59140.1p  transcript_id AT3G59140.1  
At3g59150	chr3:021872729	0.0	W/21872729-21873778,21873871-21874026,21874099-21874422	AT3G59150.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G42720.1); Has 1041 Blast hits to 1004 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1041; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G59150.1p  transcript_id AT3G59150.1  protein_id AT3G59150.1p  transcript_id AT3G59150.1  
At3g59160	chr3:021875023	0.0	W/21875023-21876057,21876174-21876314,21876423-21876641	AT3G59160.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G59170.1); Has 1270 Blast hits to 1227 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1270; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G59160.1p  transcript_id AT3G59160.1  protein_id AT3G59160.1p  transcript_id AT3G59160.1  
At3g59170	chr3:021878167	0.0	W/21878167-21879192,21879322-21879462,21879545-21879799	AT3G59170.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G59160.1); Has 1222 Blast hits to 1176 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1222; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G59170.1p  transcript_id AT3G59170.1  protein_id AT3G59170.1p  transcript_id AT3G59170.1  
At3g59180	chr3:021880719	0.0	W/21880719-21881555,21881777-21881917,21882010-21882459	AT3G59180.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G59210.1); Has 614 Blast hits to 600 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 614; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G59180.1p  transcript_id AT3G59180.1  protein_id AT3G59180.1p  transcript_id AT3G59180.1  
At3g59190	chr3:021884740	0.0	W/21884740-21885705,21885901-21886101	AT3G59190.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, seed; EXPRESSED DURING: D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G59200.1); Has 1274 Blast hits to 1236 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1274; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G59190.1p  transcript_id AT3G59190.1  protein_id AT3G59190.1p  transcript_id AT3G59190.1  
At3g59200	chr3:021887484	0.0	W/21887484-21888434,21888507-21888647,21888744-21889214	AT3G59200.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14096.1); Has 1352 Blast hits to 1314 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1352; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G59200.1p  transcript_id AT3G59200.1  protein_id AT3G59200.1p  transcript_id AT3G59200.1  
At3g59210	chr3:021889942	0.0	W/21889942-21890877,21890956-21891096,21891176-21891553	AT3G59210.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G59230.1); Has 1281 Blast hits to 1248 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G59210.1p  transcript_id AT3G59210.1  protein_id AT3G59210.1p  transcript_id AT3G59210.1  
At3g59220	chr3:021894205	0.0	W/21894205-21894308,21894401-21894450,21894545-21894583,21894665-21894756,21894844-21894944,21895024-21895501	AT3G59220.1  CDS  gene_syn ATPIRIN1, PIRIN, PRN, PRN1  gene PRN  function encodes a cupin-domain containing protein that is similar to pirins which interact with a CCAAT box binding transcription factor. The protein interacts with GPA1 (G protein alpha-subunit) in vitro. Mutants in the gene are affected in germination and early seedling development.  go_component cellular_component|GO:0005575||ND  go_process response to abscisic acid stimulus|GO:0009737|12837948|IMP  go_process response to low fluence blue light stimulus by blue low-fluence system|GO:0010244||NAS  go_function calmodulin binding|GO:0005516|11782485|ISS  product PRN (PIRIN); calmodulin binding  note PIRIN (PRN); FUNCTIONS IN: calmodulin binding; INVOLVED IN: response to low fluence blue light stimulus by blue low-fluence system, response to abscisic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pirin (InterPro:IPR012093), Pirin, C-terminal (InterPro:IPR008778), Cupin, RmlC-type (InterPro:IPR011051), Pirin, N-terminal (InterPro:IPR003829); BEST Arabidopsis thaliana protein match is: pirin, putative (TAIR:AT2G43120.1); Has 5386 Blast hits to 5384 proteins in 855 species: Archae - 43; Bacteria - 2852; Metazoa - 62; Fungi - 146; Plants - 68; Viruses - 0; Other Eukaryotes - 2215 (source: NCBI BLink).  protein_id AT3G59220.1p  transcript_id AT3G59220.1  protein_id AT3G59220.1p  transcript_id AT3G59220.1  
At3g59230	chr3:021896801	0.0	C/21896801-21897787,21896488-21896628,21896052-21896399	AT3G59230.1  CDS  go_component cellular_component|GO:0005575||ND  product F-box family protein  note F-box family protein; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G59210.1); Has 1086 Blast hits to 1052 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1086; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G59230.1p  transcript_id AT3G59230.1  protein_id AT3G59230.1p  transcript_id AT3G59230.1  
At3g59240	chr3:021899447	0.0	C/21899447-21900364,21899227-21899367,21898682-21899137	AT3G59240.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49150.1); Has 1122 Blast hits to 1087 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G59240.1p  transcript_id AT3G59240.1  protein_id AT3G59240.1p  transcript_id AT3G59240.1  
At3g59250	chr3:021903105	0.0	C/21903105-21903284,21902366-21902998,21902132-21902272,21901726-21902049	AT3G59250.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49150.1); Has 1069 Blast hits to 1044 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1069; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G59250.1p  transcript_id AT3G59250.1  protein_id AT3G59250.1p  transcript_id AT3G59250.1  
At3g59260	chr3:021903839	0.0	W/21903839-21903882,21903977-21904026,21904115-21904153,21904243-21904271,21904355-21904417,21904508-21904608,21904699-21905188	AT3G59260.1  CDS  go_component cellular_component|GO:0005575||ND  go_function calmodulin binding|GO:0005516|11782485|ISS  product pirin, putative  note pirin, putative; FUNCTIONS IN: calmodulin binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pirin, C-terminal (InterPro:IPR008778), Pirin (InterPro:IPR012093), Cupin, RmlC-type (InterPro:IPR011051), Pirin, N-terminal (InterPro:IPR003829); BEST Arabidopsis thaliana protein match is: PRN (PIRIN); calmodulin binding (TAIR:AT3G59220.1); Has 5329 Blast hits to 5327 proteins in 855 species: Archae - 43; Bacteria - 2842; Metazoa - 63; Fungi - 146; Plants - 69; Viruses - 0; Other Eukaryotes - 2166 (source: NCBI BLink).  protein_id AT3G59260.1p  transcript_id AT3G59260.1  protein_id AT3G59260.1p  transcript_id AT3G59260.1  
At3g59270	chr3:021907529	0.0	C/21907529-21907872,21907238-21907430,21907023-21907142,21906593-21906943	AT3G59270.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product syntaxin-related family protein  note syntaxin-related family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G58310.1); Has 337 Blast hits to 260 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 337; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G59270.1p  transcript_id AT3G59270.1  protein_id AT3G59270.1p  transcript_id AT3G59270.1  
At3g59280	chr3:021910517	0.0	C/21910517-21910519,21909883-21909970,21909487-21909620,21909266-21909391	AT3G59280.1  CDS  gene_syn THAXTOMIN A RESISTANT 1, TXR1  gene TXR1  function mutant exhibited resistance to growth on media containing thaxtomin due to a difference in the rate of uptake of the toxin.We proposed that TXR1 is a component of, or regulator of, a dispensable transport mechanism.  go_process biological_process|GO:0008150||ND  product TXR1 (THAXTOMIN A RESISTANT 1)  note THAXTOMIN A RESISTANT 1 (TXR1); INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein Transporter, Pam16 (InterPro:IPR005341); BEST Arabidopsis thaliana protein match is: signaling molecule-related (TAIR:AT5G61880.2); Has 288 Blast hits to 288 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 147; Fungi - 91; Plants - 37; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT3G59280.1p  transcript_id AT3G59280.1  protein_id AT3G59280.1p  transcript_id AT3G59280.1  
At3g59290	chr3:021912796	0.0	W/21912796-21912830,21912940-21912991,21913244-21913323,21913403-21913481,21913582-21913665,21913781-21913926,21914140-21914451,21914638-21914679,21914790-21914891,21914984-21915144,21915306-21915544,21915651-21916854,21916936-21917474	AT3G59290.1  CDS  go_function binding|GO:0005488||ISS  product epsin N-terminal homology (ENTH) domain-containing protein  note epsin N-terminal homology (ENTH) domain-containing protein; FUNCTIONS IN: binding; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Epsin, N-terminal (InterPro:IPR001026), Epsin-like, N-terminal (InterPro:IPR013809), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: epsin N-terminal homology (ENTH) domain-containing protein (TAIR:AT2G43160.3); Has 9239 Blast hits to 7244 proteins in 496 species: Archae - 15; Bacteria - 575; Metazoa - 4138; Fungi - 2120; Plants - 747; Viruses - 54; Other Eukaryotes - 1590 (source: NCBI BLink).  protein_id AT3G59290.1p  transcript_id AT3G59290.1  protein_id AT3G59290.1p  transcript_id AT3G59290.1  
At3g59300	chr3:021918667	0.0	W/21918667-21918700,21919246-21919369,21919487-21919703,21919813-21919915,21920003-21920067,21920191-21920307,21920405-21920503,21920717-21920870,21921019-21921128,21921303-21921452,21921558-21921653,21921767-21921877	AT3G59300.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24060.1); Has 41 Blast hits to 39 proteins in 10 species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G59300.1p  transcript_id AT3G59300.1  protein_id AT3G59300.1p  transcript_id AT3G59300.1  
At3g59310	chr3:021924193	0.0	C/21924193-21924313,21923994-21924088,21923839-21923896,21923485-21923679,21923329-21923405,21923172-21923254,21922849-21923062,21922654-21922740,21922511-21922572,21922316-21922415	AT3G59310.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF914, eukaryotic (InterPro:IPR009262); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G59340.1); Has 460 Blast hits to 457 proteins in 122 species: Archae - 2; Bacteria - 50; Metazoa - 132; Fungi - 70; Plants - 71; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).  protein_id AT3G59310.2p  transcript_id AT3G59310.2  protein_id AT3G59310.2p  transcript_id AT3G59310.2  
At3g59310	chr3:021924193	0.0	C/21924193-21924313,21923994-21924088,21923839-21923896,21923485-21923679,21923329-21923405,21923172-21923254,21923011-21923062,21922849-21922917,21922654-21922740,21922511-21922572,21922316-21922415	AT3G59310.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF914, eukaryotic (InterPro:IPR009262); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G59340.1); Has 551 Blast hits to 546 proteins in 124 species: Archae - 2; Bacteria - 55; Metazoa - 151; Fungi - 74; Plants - 69; Viruses - 0; Other Eukaryotes - 200 (source: NCBI BLink).  protein_id AT3G59310.1p  transcript_id AT3G59310.1  protein_id AT3G59310.1p  transcript_id AT3G59310.1  
At3g59320	chr3:021925941	0.0	C/21925941-21926109,21925728-21925804,21925530-21925612,21925400-21925451,21925255-21925323,21925075-21925161,21924914-21924975,21924705-21924822	AT3G59320.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane protein, putative  note integral membrane protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF914, eukaryotic (InterPro:IPR009262); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G59340.1); Has 556 Blast hits to 555 proteins in 140 species: Archae - 6; Bacteria - 88; Metazoa - 142; Fungi - 64; Plants - 67; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).  protein_id AT3G59320.2p  transcript_id AT3G59320.2  protein_id AT3G59320.2p  transcript_id AT3G59320.2  
At3g59320	chr3:021926717	0.0	C/21926717-21926840,21926545-21926639,21926248-21926305,21925941-21926135,21925728-21925804,21925530-21925612,21925400-21925451,21925255-21925323,21925075-21925161,21924914-21924975,21924705-21924822	AT3G59320.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane protein, putative  note integral membrane protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF914, eukaryotic (InterPro:IPR009262); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G59340.1); Has 925 Blast hits to 924 proteins in 233 species: Archae - 11; Bacteria - 276; Metazoa - 215; Fungi - 72; Plants - 74; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink).  protein_id AT3G59320.1p  transcript_id AT3G59320.1  protein_id AT3G59320.1p  transcript_id AT3G59320.1  
At3g59330	chr3:021928068	0.0	C/21928068-21928332,21927858-21927914,21927699-21927781,21927506-21927602,21927303-21927379,21927078-21927224	AT3G59330.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product anthocyanin-related membrane protein family  note anthocyanin-related membrane protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF914, eukaryotic (InterPro:IPR009262); BEST Arabidopsis thaliana protein match is: integral membrane protein, putative (TAIR:AT3G59320.1); Has 264 Blast hits to 264 proteins in 90 species: Archae - 0; Bacteria - 12; Metazoa - 103; Fungi - 58; Plants - 64; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT3G59330.1p  transcript_id AT3G59330.1  protein_id AT3G59330.1p  transcript_id AT3G59330.1  
At3g59340	chr3:021930901	0.0	C/21930901-21931030,21930678-21930772,21930467-21930524,21930113-21930307,21929952-21930028,21929798-21929880,21929654-21929705,21929493-21929561,21929318-21929404,21929157-21929218,21928971-21929064	AT3G59340.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF914, eukaryotic (InterPro:IPR009262); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G59310.1); Has 715 Blast hits to 712 proteins in 169 species: Archae - 7; Bacteria - 146; Metazoa - 153; Fungi - 87; Plants - 74; Viruses - 0; Other Eukaryotes - 248 (source: NCBI BLink).  protein_id AT3G59340.1p  transcript_id AT3G59340.1  protein_id AT3G59340.1p  transcript_id AT3G59340.1  
At3g59350	chr3:021932930	0.0	W/21932930-21932971,21933308-21933488,21933600-21934251,21934337-21934469,21934563-21934649,21934752-21934883	AT3G59350.1  CDS  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product serine/threonine protein kinase, putative  note serine/threonine protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase, active site (InterPro:IPR008266), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase, putative (TAIR:AT2G43230.1); Has 79023 Blast hits to 78149 proteins in 3035 species: Archae - 48; Bacteria - 7473; Metazoa - 34844; Fungi - 5822; Plants - 17686; Viruses - 277; Other Eukaryotes - 12873 (source: NCBI BLink).  protein_id AT3G59350.1p  transcript_id AT3G59350.1  protein_id AT3G59350.1p  transcript_id AT3G59350.1  
At3g59350	chr3:021932930	0.0	W/21932930-21932971,21933308-21933488,21933600-21934251,21934337-21934469,21934563-21934649,21934752-21934883	AT3G59350.3  CDS  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product serine/threonine protein kinase, putative  note serine/threonine protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase, active site (InterPro:IPR008266), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase, putative (TAIR:AT2G43230.1); Has 79023 Blast hits to 78149 proteins in 3035 species: Archae - 48; Bacteria - 7473; Metazoa - 34844; Fungi - 5822; Plants - 17686; Viruses - 277; Other Eukaryotes - 12873 (source: NCBI BLink).  protein_id AT3G59350.3p  transcript_id AT3G59350.3  protein_id AT3G59350.3p  transcript_id AT3G59350.3  
At3g59350	chr3:021933392	0.0	W/21933392-21933488,21933600-21934251,21934337-21934469,21934563-21934649,21934752-21934883	AT3G59350.2  CDS  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product serine/threonine protein kinase, putative  note serine/threonine protein kinase, putative; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase, active site (InterPro:IPR008266), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase, putative (TAIR:AT2G43230.1); Has 79008 Blast hits to 78134 proteins in 3034 species: Archae - 48; Bacteria - 7471; Metazoa - 34836; Fungi - 5817; Plants - 17686; Viruses - 277; Other Eukaryotes - 12873 (source: NCBI BLink).  protein_id AT3G59350.2p  transcript_id AT3G59350.2  protein_id AT3G59350.2p  transcript_id AT3G59350.2  
At3g59360	chr3:021939475	0.0	C/21939475-21939642,21939238-21939354,21938889-21938945,21938344-21938421,21937768-21937872,21937438-21937560,21937226-21937303,21936880-21936949,21936633-21936740,21936321-21936454,21936149-21936231,21935960-21936005,21935826-21935876	AT3G59360.1  CDS  gene_syn ATUTR6, UDP-GALACTOSE TRANSPORTER 6, UTR6  gene UTR6  go_component Golgi membrane|GO:0000139||IEA  go_component integral to membrane|GO:0016021||IEA  go_process carbohydrate transport|GO:0008643||IEA  go_function sugar:hydrogen symporter activity|GO:0005351||IEA  go_process nucleotide-sugar transport|GO:0015780||ISS  go_function nucleotide-sugar transmembrane transporter activity|GO:0005338||ISS  product UTR6 (UDP-GALACTOSE TRANSPORTER 6); nucleotide-sugar transmembrane transporter/ sugar:hydrogen symporter  note UDP-GALACTOSE TRANSPORTER 6 (UTR6); FUNCTIONS IN: nucleotide-sugar transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: carbohydrate transport, nucleotide-sugar transport; LOCATED IN: integral to membrane, Golgi membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide-sugar transporter (InterPro:IPR007271); BEST Arabidopsis thaliana protein match is: nucleotide-sugar transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT2G43240.1); Has 766 Blast hits to 742 proteins in 122 species: Archae - 0; Bacteria - 6; Metazoa - 499; Fungi - 72; Plants - 96; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT3G59360.1p  transcript_id AT3G59360.1  protein_id AT3G59360.1p  transcript_id AT3G59360.1  
At3g59360	chr3:021939475	0.0	C/21939475-21939642,21939238-21939354,21938889-21938945,21938344-21938421,21937768-21937872,21937438-21937560,21937226-21937303,21936880-21936949,21936633-21936740,21936321-21936454,21936149-21936231,21935960-21936005,21935826-21935876	AT3G59360.2  CDS  gene_syn ATUTR6, UDP-GALACTOSE TRANSPORTER 6, UTR6  gene UTR6  go_component Golgi membrane|GO:0000139||IEA  go_component integral to membrane|GO:0016021||IEA  go_process carbohydrate transport|GO:0008643||IEA  go_function sugar:hydrogen symporter activity|GO:0005351||IEA  go_process nucleotide-sugar transport|GO:0015780||ISS  go_function nucleotide-sugar transmembrane transporter activity|GO:0005338||ISS  product UTR6 (UDP-GALACTOSE TRANSPORTER 6); nucleotide-sugar transmembrane transporter/ sugar:hydrogen symporter  note UDP-GALACTOSE TRANSPORTER 6 (UTR6); FUNCTIONS IN: nucleotide-sugar transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: carbohydrate transport, nucleotide-sugar transport; LOCATED IN: integral to membrane, Golgi membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide-sugar transporter (InterPro:IPR007271); BEST Arabidopsis thaliana protein match is: nucleotide-sugar transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT2G43240.1); Has 766 Blast hits to 742 proteins in 122 species: Archae - 0; Bacteria - 6; Metazoa - 499; Fungi - 72; Plants - 96; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT3G59360.2p  transcript_id AT3G59360.2  protein_id AT3G59360.2p  transcript_id AT3G59360.2  
At3g59370	chr3:021942518	0.0	C/21942518-21942532,21942060-21942332	AT3G59370.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, flower, root, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 1827 Blast hits to 444 proteins in 84 species: Archae - 12; Bacteria - 120; Metazoa - 1213; Fungi - 71; Plants - 63; Viruses - 49; Other Eukaryotes - 299 (source: NCBI BLink).  protein_id AT3G59370.1p  transcript_id AT3G59370.1  protein_id AT3G59370.1p  transcript_id AT3G59370.1  
At3g59380	chr3:021944209	0.0	W/21944209-21944433,21944570-21944679,21944950-21945070,21945156-21945251,21945353-21945781	AT3G59380.1  CDS  gene_syn ATFTA, FARNESYLTRANSFERASE A, FARNESYLTRANSFERASE SUBUNIT A, FTA, PFT/PGGT-IALPHA, PLP, PLURIPETALA  gene FTA  function Encodes the alpha-subunit shared between protein farnesyltransferase and protein geranylgeranyltransferase-I. Involved in protein prenylation: covalent attachment of the C-15 isoprene farnesyl or the C-20 isoprene geranylgeranyl groups to the C-terminal end of some proteins. Involved in shoot and flower meristem homeostasis, and response to ABA and drought. Also regulates leaf cell shape. Mutant is epistatic to era1.  go_component CAAX-protein geranylgeranyltransferase complex|GO:0005953|11500541|IPI  go_component protein farnesyltransferase complex|GO:0005965|15469499|IPI  go_process regulation of cell shape|GO:0008360|15128936|IMP  go_process response to water deprivation|GO:0009414|16045476|IMP  go_process negative regulation of abscisic acid mediated signaling|GO:0009788|15128936|IMP  go_process protein amino acid prenylation|GO:0018346|15128936|IDA  go_process protein amino acid farnesylation|GO:0018347|11500541|TAS  go_process protein amino acid geranylgeranylation|GO:0018348|11500541|IDA  go_process regulation of meristem development|GO:0048509|15128936|IMP  go_function farnesyltranstransferase activity|GO:0004311|11500541|TAS  go_function protein prenyltransferase activity|GO:0008318|15128936|IDA  go_function protein heterodimerization activity|GO:0046982|11500541|IPI  product FTA (FARNESYLTRANSFERASE A); farnesyltranstransferase/ protein heterodimerization/ protein prenyltransferase  note FARNESYLTRANSFERASE A (FTA); FUNCTIONS IN: farnesyltranstransferase activity, protein heterodimerization activity, protein prenyltransferase activity; INVOLVED IN: in 7 processes; LOCATED IN: CAAX-protein geranylgeranyltransferase complex, protein farnesyltransferase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein prenyltransferase (InterPro:IPR008940), Protein prenyltransferase, alpha subunit (InterPro:IPR002088); BEST Arabidopsis thaliana protein match is: protein prenyltransferase (TAIR:AT4G24490.2); Has 996 Blast hits to 790 proteins in 180 species: Archae - 22; Bacteria - 31; Metazoa - 522; Fungi - 196; Plants - 94; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).  protein_id AT3G59380.1p  transcript_id AT3G59380.1  protein_id AT3G59380.1p  transcript_id AT3G59380.1  
At3g59390	chr3:021946160	0.0	W/21946160-21946245,21946331-21946407,21946512-21946587,21946696-21946768,21946861-21946912,21947004-21947065,21947283-21947346,21947434-21947491,21947584-21947670,21947823-21947916,21948074-21948166	AT3G59390.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 118 Blast hits to 118 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G59390.1p  transcript_id AT3G59390.1  protein_id AT3G59390.1p  transcript_id AT3G59390.1  
At3g59390	chr3:021946160	0.0	W/21946160-21946245,21946331-21946407,21946512-21946587,21946696-21946768,21946861-21946912,21947004-21947065,21947283-21947346,21947434-21947491,21947584-21947670,21947823-21947916,21948074-21948166	AT3G59390.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 118 Blast hits to 118 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G59390.2p  transcript_id AT3G59390.2  protein_id AT3G59390.2p  transcript_id AT3G59390.2  
At3g59400	chr3:021948881	0.0	C/21948881-21949678	AT3G59400.1  CDS  gene_syn GUN4  gene GUN4  function GUN, genomes uncoupled, is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast. Binds to the magnesium chelatase complex and promotes formation of the substrate,a tetrapyrrole signaling molecule. Porphyrin-binding protein that enhances the activity of Mg-chelatase. Although required for chlorophyll accumulation under normal growth conditions, GUN4 is not essential for chlorophyll synthesis.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|12574634|IDA  go_process chloroplast-nucleus signaling pathway|GO:0010019|12574634|IMP  go_process chlorophyll biosynthetic process|GO:0015995|15884974|TAS  go_process positive regulation of catalytic activity|GO:0043085|12574634|TAS  go_function enzyme binding|GO:0019899|12574634|IPI  go_function tetrapyrrole binding|GO:0046906|12574634|IDA  product GUN4; enzyme binding / tetrapyrrole binding  note GUN4; FUNCTIONS IN: tetrapyrrole binding, enzyme binding; INVOLVED IN: chlorophyll biosynthetic process, positive regulation of catalytic activity, chloroplast-nucleus signaling pathway; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GUN4-like (InterPro:IPR008629); Has 558 Blast hits to 553 proteins in 80 species: Archae - 0; Bacteria - 375; Metazoa - 5; Fungi - 2; Plants - 30; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).  protein_id AT3G59400.1p  transcript_id AT3G59400.1  protein_id AT3G59400.1p  transcript_id AT3G59400.1  
At3g59410	chr3:021950575	0.0	W/21950575-21950699,21951047-21951121,21951228-21951287,21951370-21951475,21951568-21951672,21951824-21952228,21952504-21952722,21952810-21952896,21952981-21953092,21953444-21953561,21953954-21954008,21954188-21954357,21954674-21954858,21955157-21955305,21955418-21955667,21955971-21956244,21956316-21956409,21956710-21956790,21956932-21956988,21957202-21957333,21957427-21957510,21957618-21957726,21957793-21957929,21958143-21958250,21958486-21958571,21958643-21958745,21958839-21958967,21959041-21959151	AT3G59410.1  CDS  go_component cytoplasm|GO:0005737||IEA  go_process translation|GO:0006412||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function ATP binding|GO:0005524||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: protein amino acid phosphorylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Aminoacyl-tRNA synthetase, class II, conserved region (InterPro:IPR006195), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), Anticodon-binding (InterPro:IPR004154), Tyrosine protein kinase, active site (InterPro:IPR008266), RWD (InterPro:IPR006575); BEST Arabidopsis thaliana protein match is: ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding (TAIR:AT3G02760.1); Has 74188 Blast hits to 73038 proteins in 3071 species: Archae - 51; Bacteria - 6784; Metazoa - 30526; Fungi - 7129; Plants - 14962; Viruses - 292; Other Eukaryotes - 14444 (source: NCBI BLink).  protein_id AT3G59410.1p  transcript_id AT3G59410.1  protein_id AT3G59410.1p  transcript_id AT3G59410.1  
At3g59415	chr3:021959510	0.0	W/21959510-21959580	AT3G59415.1  tRNA  gene_syn 67309.TRNA-THR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Thr (anticodon: TGT)  transcript_id AT3G59415.1  
At3g59420	chr3:021959871	0.0	C/21959871-21962558	AT3G59420.1  CDS  gene_syn ACR4, ARABIDOPSIS CRINKLY4  gene ACR4  function Encodes a membrane localized protein with similarity to receptor kinases which is involved in epidermal cell differentiation. Flowers of mutants have disorganized ovule integument growth and abnormal sepal margins. In the roots, mutants initiate more lateral roots but fewer laterals actually emerge due to defects in lateral root formation. Mutants also display disorganized columella. The root phenotypes can be traced to abnormalities in asymmetric divisions in the pericycle and root apex. Conflicting data regarding the role of the kinase domain- which may or may not be required for function. Complementation studies indicate that the C-terminal domain is also not required for signaling function. May be regulated by protein turnover which is mediated by endocytic processes.  go_component plasma membrane|GO:0005886|15772284|IDA  go_component cell surface|GO:0009986|11978870|IDA  go_component endocytic vesicle|GO:0030139|15772284|IDA  go_process regulation of asymmetric cell division|GO:0009786|18948541|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|11978870|IMP  go_process lateral root formation|GO:0010311|18948541|IMP  go_process root cap development|GO:0048829|18948541|IMP  go_function kinase activity|GO:0016301||ISS  go_function transmembrane receptor protein kinase activity|GO:0019199|11978870|ISS  product ACR4 (ARABIDOPSIS CRINKLY4); kinase/ transmembrane receptor protein kinase  note ARABIDOPSIS CRINKLY4 (ACR4); FUNCTIONS IN: transmembrane receptor protein kinase activity, kinase activity; INVOLVED IN: embryonic development ending in seed dormancy, root cap development, regulation of asymmetric cell division, lateral root formation; LOCATED IN: endocytic vesicle, plasma membrane, cell surface; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: TNFR/CD27/30/40/95 cysteine-rich region (InterPro:IPR001368), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CCR2 (ARABIDOPSIS THALIANA CRINKLY4 RELATED 2); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ receptor (TAIR:AT2G39180.1); Has 82882 Blast hits to 81602 proteins in 3104 species: Archae - 44; Bacteria - 7220; Metazoa - 36670; Fungi - 6418; Plants - 18214; Viruses - 360; Other Eukaryotes - 13956 (source: NCBI BLink).  protein_id AT3G59420.1p  transcript_id AT3G59420.1  protein_id AT3G59420.1p  transcript_id AT3G59420.1  
At3g59430	chr3:021964611	0.0	C/21964611-21965606,21964484-21964525	AT3G59430.3  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; Has 228 Blast hits to 76 proteins in 29 species: Archae - 0; Bacteria - 33; Metazoa - 28; Fungi - 10; Plants - 14; Viruses - 2; Other Eukaryotes - 141 (source: NCBI BLink).  protein_id AT3G59430.3p  transcript_id AT3G59430.3  protein_id AT3G59430.3p  transcript_id AT3G59430.3  
At3g59430	chr3:021966363	0.0	C/21966363-21966497,21966054-21966156,21965864-21965964,21964611-21965585,21964484-21964525	AT3G59430.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; Has 289 Blast hits to 80 proteins in 33 species: Archae - 0; Bacteria - 34; Metazoa - 23; Fungi - 13; Plants - 16; Viruses - 2; Other Eukaryotes - 201 (source: NCBI BLink).  protein_id AT3G59430.1p  transcript_id AT3G59430.1  protein_id AT3G59430.1p  transcript_id AT3G59430.1  
At3g59430	chr3:021966363	0.0	C/21966363-21966497,21966054-21966156,21965864-21965964,21964611-21965585,21964484-21964525	AT3G59430.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; Has 289 Blast hits to 80 proteins in 33 species: Archae - 0; Bacteria - 34; Metazoa - 23; Fungi - 13; Plants - 16; Viruses - 2; Other Eukaryotes - 201 (source: NCBI BLink).  protein_id AT3G59430.2p  transcript_id AT3G59430.2  protein_id AT3G59430.2p  transcript_id AT3G59430.2  
At3g59440	chr3:021970423	0.0	W/21970423-21971010	AT3G59440.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function calcium ion binding|GO:0005509||IEA  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding protein, putative  note calcium-binding protein, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: MSS3 (multicopy suppressors of snf4 deficiency in yeast 3); calcium ion binding (TAIR:AT2G43290.1); Has 18783 Blast hits to 13443 proteins in 1292 species: Archae - 0; Bacteria - 138; Metazoa - 8318; Fungi - 4415; Plants - 2987; Viruses - 2; Other Eukaryotes - 2923 (source: NCBI BLink).  protein_id AT3G59440.1p  transcript_id AT3G59440.1  protein_id AT3G59440.1p  transcript_id AT3G59440.1  
At3g59450	chr3:021972840	0.0	W/21972840-21972844,21973637-21973806,21973887-21973972,21974079-21974135,21974795-21974923	AT3G59450.1  CDS  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding protein, putative (TAIR:AT3G59440.1); Has 62 Blast hits to 62 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G59450.1p  transcript_id AT3G59450.1  protein_id AT3G59450.1p  transcript_id AT3G59450.1  
At3g59455	chr3:021976840	0.0	W/21976840-21977130	AT3G59455.1  CDS  function Encodes a Protease inhibitor/seed storage/LTP family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11825.1); Has 4 Blast hits to 4 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G59455.1p  transcript_id AT3G59455.1  protein_id AT3G59455.1p  transcript_id AT3G59455.1  
At3g59460	chr3:021977513	0.0	W/21977513-21977524,21977912-21978061,21978165-21978323	AT3G59460.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, pollen tube; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G60040.1); Has 152 Blast hits to 150 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 152; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G59460.1p  transcript_id AT3G59460.1  protein_id AT3G59460.1p  transcript_id AT3G59460.1  
At3g59470	chr3:021979543	0.0	C/21979543-21980097,21979099-21979299	AT3G59470.1  CDS  go_process response to red or far red light|GO:0009639||ISS  product far-red impaired responsive family protein / FAR1 family protein  note far-red impaired responsive family protein / FAR1 family protein; INVOLVED IN: response to red or far red light; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, FAR1-related (InterPro:IPR004330); BEST Arabidopsis thaliana protein match is: far-red impaired responsive family protein / FAR1 family protein (TAIR:AT3G07500.1); Has 467 Blast hits to 438 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 467; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G59470.1p  transcript_id AT3G59470.1  protein_id AT3G59470.1p  transcript_id AT3G59470.1  
At3g59480	chr3:021983103	0.0	W/21983103-21983504,21983682-21984014,21984106-21984222,21984312-21984440	AT3G59480.1  CDS  go_process sucrose biosynthetic process|GO:0005986||IEA  go_process D-ribose metabolic process|GO:0006014||IEA  go_process sucrose catabolic process, using beta-fructofuranosidase|GO:0019575||IEA  go_process acetate fermentation|GO:0019654||IEA  go_function ribokinase activity|GO:0004747||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product pfkB-type carbohydrate kinase family protein  note pfkB-type carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process, acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-type carbohydrate kinase family protein (TAIR:AT2G31390.1); Has 12101 Blast hits to 12099 proteins in 1317 species: Archae - 211; Bacteria - 7841; Metazoa - 113; Fungi - 101; Plants - 260; Viruses - 0; Other Eukaryotes - 3575 (source: NCBI BLink).  protein_id AT3G59480.1p  transcript_id AT3G59480.1  protein_id AT3G59480.1p  transcript_id AT3G59480.1  
At3g59490	chr3:021986160	0.0	C/21986160-21986262,21985755-21985864,21985525-21985674,21985221-21985423,21985019-21985129,21984905-21984949,21984660-21984819	AT3G59490.2  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 19 Blast hits to 19 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G59490.2p  transcript_id AT3G59490.2  protein_id AT3G59490.2p  transcript_id AT3G59490.2  
At3g59490	chr3:021986160	0.0	C/21986160-21986262,21985755-21985864,21985525-21985674,21985221-21985423,21985019-21985129,21984905-21984949,21984802-21984811	AT3G59490.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 15 Blast hits to 15 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G59490.1p  transcript_id AT3G59490.1  protein_id AT3G59490.1p  transcript_id AT3G59490.1  
At3g59500	chr3:021987110	0.0	W/21987110-21987280,21987369-21987467,21987544-21987695,21987782-21988169	AT3G59500.1  CDS  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component integral to membrane|GO:0016021||ISS  product integral membrane HRF1 family protein  note integral membrane HRF1 family protein; LOCATED IN: integral to membrane, endoplasmic reticulum; EXPRESSED IN: guard cell, callus; CONTAINS InterPro DOMAIN/s: Hrf1 (InterPro:IPR005578); BEST Arabidopsis thaliana protein match is: integral membrane HRF1 family protein (TAIR:AT1G30890.2); Has 337 Blast hits to 337 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 169; Fungi - 90; Plants - 38; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT3G59500.1p  transcript_id AT3G59500.1  protein_id AT3G59500.1p  transcript_id AT3G59500.1  
At3g59510	chr3:021988453	0.0	C/21988453-21989712	AT3G59510.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT2G15320.1); Has 37942 Blast hits to 14457 proteins in 711 species: Archae - 21; Bacteria - 2362; Metazoa - 8383; Fungi - 327; Plants - 24604; Viruses - 3; Other Eukaryotes - 2242 (source: NCBI BLink).  protein_id AT3G59510.1p  transcript_id AT3G59510.1  protein_id AT3G59510.1p  transcript_id AT3G59510.1  
At3g59520	chr3:021992054	0.0	W/21992054-21992863	AT3G59520.1  CDS  gene_syn ARABIDOPSIS RHOMBOID-LIKE PROTEIN 13, ATRBL13  gene ATRBL13  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  product ATRBL13 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 13)  note ARABIDOPSIS RHOMBOID-LIKE PROTEIN 13 (ATRBL13); INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: ATRBL15 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 15) (TAIR:AT3G58460.1); Has 1030 Blast hits to 1030 proteins in 417 species: Archae - 7; Bacteria - 685; Metazoa - 94; Fungi - 60; Plants - 63; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).  protein_id AT3G59520.1p  transcript_id AT3G59520.1  protein_id AT3G59520.1p  transcript_id AT3G59520.1  
At3g59530	chr3:021993710	0.0	W/21993710-21994086,21994173-21994457,21994542-21994709,21994783-21995164	AT3G59530.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function strictosidine synthase activity|GO:0016844||IEA  go_process alkaloid biosynthetic process|GO:0009821||ISS  go_process pollen exine formation|GO:0010584||IMP  go_function strictosidine synthase activity|GO:0016844||ISS  product strictosidine synthase family protein  note strictosidine synthase family protein; FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: alkaloid biosynthetic process, pollen exine formation; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Strictosidine synthase, conserved region (InterPro:IPR018119), Strictosidine synthase (InterPro:IPR004141), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: strictosidine synthase family protein (TAIR:AT5G22020.1); Has 1179 Blast hits to 1172 proteins in 281 species: Archae - 1; Bacteria - 472; Metazoa - 198; Fungi - 45; Plants - 298; Viruses - 0; Other Eukaryotes - 165 (source: NCBI BLink).  protein_id AT3G59530.1p  transcript_id AT3G59530.1  protein_id AT3G59530.1p  transcript_id AT3G59530.1  
At3g59530	chr3:021993710	0.0	W/21993710-21994086,21994173-21994457,21994542-21994709,21994783-21995164	AT3G59530.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_function strictosidine synthase activity|GO:0016844||IEA  go_process alkaloid biosynthetic process|GO:0009821||ISS  go_process pollen exine formation|GO:0010584||IMP  go_function strictosidine synthase activity|GO:0016844||ISS  product strictosidine synthase family protein  note strictosidine synthase family protein; FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: alkaloid biosynthetic process, pollen exine formation; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Strictosidine synthase, conserved region (InterPro:IPR018119), Strictosidine synthase (InterPro:IPR004141), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: strictosidine synthase family protein (TAIR:AT5G22020.1); Has 1179 Blast hits to 1172 proteins in 281 species: Archae - 1; Bacteria - 472; Metazoa - 198; Fungi - 45; Plants - 298; Viruses - 0; Other Eukaryotes - 165 (source: NCBI BLink).  protein_id AT3G59530.2p  transcript_id AT3G59530.2  protein_id AT3G59530.2p  transcript_id AT3G59530.2  
At3g59540	chr3:021996740	0.0	C/21996740-21996742,21996224-21996407,21995897-21995919	AT3G59540.1  CDS  gene_syn T16L24.90  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L38 (RPL38B)  note 60S ribosomal protein L38 (RPL38B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, ribosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L38e (InterPro:IPR002675); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L38 (RPL38A) (TAIR:AT2G43460.1); Has 458 Blast hits to 458 proteins in 191 species: Archae - 3; Bacteria - 0; Metazoa - 220; Fungi - 79; Plants - 70; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT3G59540.1p  transcript_id AT3G59540.1  protein_id AT3G59540.1p  transcript_id AT3G59540.1  
At3g59550	chr3:021997262	0.0	W/21997262-21997385,21997619-21997877,21997963-21998009,21998099-21998148,21998257-21998291,21998407-21998891,21998984-21999089,21999167-21999303,21999402-21999913,22000004-22000089,22000175-22000313,22000395-22000496	AT3G59550.1  CDS  gene_syn ATRAD21.2, ATSYN3, SISTER CHROMATID COHESION 1 PROTEIN 3, SYN3  gene SYN3  function Encodes an alpha-kleisin protein that is localized primarily in the nucleolus and is essential for megagametogenesis and plays an important role in pollen development. alpha-kleisins are core components of meiotic and mitotic cohesin complexes.  go_component nuclear cohesin complex|GO:0000798|11410371|ISS  go_component nucleus|GO:0005634|11410371|ISS  go_component nucleolus|GO:0005730|17488242|IDA  go_process mitosis|GO:0007067|11410371|IEP  go_process pollen development|GO:0009555|17488242|IMP  go_process megagametogenesis|GO:0009561|17488242|IMP  go_function molecular_function|GO:0003674||ND  product SYN3  note SYN3; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mitosis, megagametogenesis, pollen development; LOCATED IN: nucleolus, nuclear cohesin complex, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Rad21/Rec8 like protein, C-terminal (InterPro:IPR006909), Rad21/Rec8 like protein, N-terminal (InterPro:IPR006910); BEST Arabidopsis thaliana protein match is: zinc knuckle (CCHC-type) family protein (TAIR:AT4G05360.1); Has 801 Blast hits to 701 proteins in 166 species: Archae - 0; Bacteria - 31; Metazoa - 351; Fungi - 211; Plants - 113; Viruses - 4; Other Eukaryotes - 91 (source: NCBI BLink).  protein_id AT3G59550.1p  transcript_id AT3G59550.1  protein_id AT3G59550.1p  transcript_id AT3G59550.1  
At3g59570	chr3:022005268	0.0	C/22005268-22005402,22005077-22005175,22004875-22004978,22004013-22004773,22003772-22003894,22003576-22003664,22003264-22003464,22001775-22002051,22001587-22001702,22001390-22001473,22001030-22001203	AT3G59570.1  CDS  go_component intracellular|GO:0005622||IEA  go_process regulation of Rab GTPase activity|GO:0032313||IEA  go_function RAB GTPase activator activity|GO:0005097||IEA  product RabGAP/TBC domain-containing protein  note RabGAP/TBC domain-containing protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: RAB GTPase activator (TAIR:AT2G43490.3); Has 2942 Blast hits to 2578 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 1722; Fungi - 512; Plants - 331; Viruses - 0; Other Eukaryotes - 377 (source: NCBI BLink).  protein_id AT3G59570.1p  transcript_id AT3G59570.1  protein_id AT3G59570.1p  transcript_id AT3G59570.1  
At3g59580	chr3:022009652	0.0	W/22009652-22010419,22010518-22011300,22011396-22011516,22011616-22011975,22012069-22012721	AT3G59580.1  CDS  go_function transcription factor activity|GO:0003700|11118137|ISS  product RWP-RK domain-containing protein  note RWP-RK domain-containing protein; FUNCTIONS IN: transcription factor activity; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: RWP-RK domain-containing protein (TAIR:AT2G43500.2); Has 337 Blast hits to 268 proteins in 29 species: Archae - 0; Bacteria - 10; Metazoa - 1; Fungi - 0; Plants - 316; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT3G59580.1p  transcript_id AT3G59580.1  protein_id AT3G59580.1p  transcript_id AT3G59580.1  
At3g59580	chr3:022009652	0.0	W/22009652-22010419,22010518-22011300,22011396-22011516,22011616-22011975,22012069-22012721	AT3G59580.2  CDS  go_function transcription factor activity|GO:0003700|11118137|ISS  product RWP-RK domain-containing protein  note RWP-RK domain-containing protein; FUNCTIONS IN: transcription factor activity; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: RWP-RK domain-containing protein (TAIR:AT2G43500.2); Has 337 Blast hits to 268 proteins in 29 species: Archae - 0; Bacteria - 10; Metazoa - 1; Fungi - 0; Plants - 316; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT3G59580.2p  transcript_id AT3G59580.2  protein_id AT3G59580.2p  transcript_id AT3G59580.2  
At3g59590	chr3:022014167	0.0	W/22014167-22014193,22014258-22014950,22015030-22015395,22015490-22015768	AT3G59590.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product jacalin lectin family protein  note jacalin lectin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated (InterPro:IPR006527), Mannose-binding lectin (InterPro:IPR001229), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein / jacalin lectin family protein (TAIR:AT3G59610.1); Has 1038 Blast hits to 737 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1038; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G59590.1p  transcript_id AT3G59590.1  protein_id AT3G59590.1p  transcript_id AT3G59590.1  
At3g59600	chr3:022016629	0.0	W/22016629-22016707,22016934-22017091,22017605-22017696,22017812-22017923	AT3G59600.1  CDS  gene_syn NRPB8B, NRPD8B, NRPE8B  gene NRPB8B  function One of two highly similar proteins that can serve as non-catalytic subunits of Nuclear RNA polymerases II, IV and V; homologous to budding yeast RPB8. Probably redundant with At1g54250.  go_process transcription|GO:0006350||IEA  go_component DNA-directed RNA polymerase II, core complex|GO:0005665|19110459|IPI  go_process transcription|GO:0006350||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product NRPB8B; DNA-directed RNA polymerase  note NRPB8B; FUNCTIONS IN: DNA-directed RNA polymerase activity; INVOLVED IN: transcription; LOCATED IN: DNA-directed RNA polymerase II, core complex; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), RNA polymerase, Rpb8 (InterPro:IPR005570); BEST Arabidopsis thaliana protein match is: NRPB8A; DNA-directed RNA polymerase (TAIR:AT1G54250.1); Has 356 Blast hits to 354 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 133; Plants - 46; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT3G59600.1p  transcript_id AT3G59600.1  protein_id AT3G59600.1p  transcript_id AT3G59600.1  
At3g59610	chr3:022019553	0.0	W/22019553-22020881,22020963-22021199	AT3G59610.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein / jacalin lectin family protein  note F-box family protein / jacalin lectin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), Mannose-binding lectin (InterPro:IPR001229), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: jacalin lectin family protein (TAIR:AT3G59590.1); Has 1313 Blast hits to 1023 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1311; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G59610.1p  transcript_id AT3G59610.1  protein_id AT3G59610.1p  transcript_id AT3G59610.1  
At3g59620	chr3:022024039	0.0	W/22024039-22024284,22024380-22024496	AT3G59620.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin lectin family protein (TAIR:AT5G35940.1); Has 163 Blast hits to 125 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 163; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G59620.1p  transcript_id AT3G59620.1  protein_id AT3G59620.1p  transcript_id AT3G59620.1  
At3g59630	chr3:022027690	0.0	C/22027690-22027776,22027380-22027576,22027180-22027288,22026741-22027071,22026555-22026624,22026362-22026429,22026144-22026259,22025940-22026046,22025694-22025839,22025355-22025599	AT3G59630.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product diphthamide synthesis DPH2 family protein  note diphthamide synthesis DPH2 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Diphthamide synthesis, DPH1/DHP2 (InterPro:IPR002728), Diphthamide synthesis, DHP2 (InterPro:IPR010014); BEST Arabidopsis thaliana protein match is: diphthamide synthesis DPH2 family protein (TAIR:AT5G62030.1); Has 708 Blast hits to 673 proteins in 196 species: Archae - 66; Bacteria - 0; Metazoa - 214; Fungi - 208; Plants - 39; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink).  protein_id AT3G59630.1p  transcript_id AT3G59630.1  protein_id AT3G59630.1p  transcript_id AT3G59630.1  
At3g59640	chr3:022029101	0.0	W/22029101-22029364,22029741-22029986,22030070-22030300	AT3G59640.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G43630.1); Has 95 Blast hits to 95 proteins in 26 species: Archae - 0; Bacteria - 4; Metazoa - 39; Fungi - 4; Plants - 39; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G59640.1p  transcript_id AT3G59640.1  protein_id AT3G59640.1p  transcript_id AT3G59640.1  
At3g59640	chr3:022029101	0.0	W/22029101-22029364,22029741-22029986,22030070-22030300	AT3G59640.2  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G43630.1); Has 95 Blast hits to 95 proteins in 26 species: Archae - 0; Bacteria - 4; Metazoa - 39; Fungi - 4; Plants - 39; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G59640.2p  transcript_id AT3G59640.2  protein_id AT3G59640.2p  transcript_id AT3G59640.2  
At3g59650	chr3:022033216	0.0	W/22033216-22033295,22033568-22033674,22033756-22033928	AT3G59650.1  CDS  go_component mitochondrion|GO:0005739||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial ribosomal protein L51/S25/CI-B8 family protein  note mitochondrial ribosomal protein L51/S25/CI-B8 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein/NADH dehydrogenase domain (InterPro:IPR007741); Has 251 Blast hits to 251 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 74; Plants - 25; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT3G59650.1p  transcript_id AT3G59650.1  protein_id AT3G59650.1p  transcript_id AT3G59650.1  
At3g59660	chr3:022038284	0.0	C/22038284-22038484,22038073-22038123,22037892-22037989,22037586-22037661,22037187-22037315,22037040-22037086,22036750-22036870,22036553-22036669,22036448-22036477,22036260-22036359,22035917-22036023,22035610-22035756,22035422-22035526,22035123-22035269,22034954-22035007,22034784-22034847,22034635-22034696,22034426-22034554	AT3G59660.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein / GRAM domain-containing protein  note C2 domain-containing protein / GRAM domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), GRAM (InterPro:IPR004182), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: VAD1 (VASCULAR ASSOCIATED DEATH1) (TAIR:AT1G02120.1); Has 2203 Blast hits to 1975 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 1394; Fungi - 230; Plants - 395; Viruses - 0; Other Eukaryotes - 184 (source: NCBI BLink).  protein_id AT3G59660.1p  transcript_id AT3G59660.1  protein_id AT3G59660.1p  transcript_id AT3G59660.1  
At3g59670	chr3:022040485	0.0	W/22040485-22040876,22040970-22041292,22041387-22041437,22041521-22041990,22042063-22042380	AT3G59670.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37440.2); Has 45 Blast hits to 45 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G59670.1p  transcript_id AT3G59670.1  protein_id AT3G59670.1p  transcript_id AT3G59670.1  
At3g59680	chr3:022044175	0.0	W/22044175-22044296,22045256-22045823	AT3G59680.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; Has 21 Blast hits to 21 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G59680.2p  transcript_id AT3G59680.2  protein_id AT3G59680.2p  transcript_id AT3G59680.2  
At3g59680	chr3:022045218	0.0	W/22045218-22045823	AT3G59680.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; Has 21 Blast hits to 21 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G59680.1p  transcript_id AT3G59680.1  protein_id AT3G59680.1p  transcript_id AT3G59680.1  
At3g59690	chr3:022049572	0.0	W/22049572-22049655,22049762-22050226,22050316-22050525,22050611-22050727,22050802-22051479	AT3G59690.1  CDS  gene_syn IQ-domain 13, IQD13  gene IQD13  go_component plasma membrane|GO:0005886|17317660|IDA  go_function calmodulin binding|GO:0005516||ISS  product IQD13 (IQ-domain 13); calmodulin binding  note IQ-domain 13 (IQD13); FUNCTIONS IN: calmodulin binding; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQD14; calmodulin binding (TAIR:AT2G43680.3); Has 1121 Blast hits to 633 proteins in 83 species: Archae - 0; Bacteria - 15; Metazoa - 87; Fungi - 29; Plants - 673; Viruses - 44; Other Eukaryotes - 273 (source: NCBI BLink).  protein_id AT3G59690.1p  transcript_id AT3G59690.1  protein_id AT3G59690.1p  transcript_id AT3G59690.1  
At3g59695	chr3:022049730	0.0	C/22049730-22051595	AT3G59695.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT3G59690  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G59695.1  
At3g59700	chr3:022052146	0.0	W/22052146-22054131	AT3G59700.1  CDS  gene_syn ARABIDOPSIS THALIANA LECTIN-RECEPTOR KINASE, ATHLECRK, LECRK1, LECTIN-RECEPTOR KINASE 1  gene ATHLECRK  function member of Receptor kinase-like protein family  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product ATHLECRK (ARABIDOPSIS THALIANA LECTIN-RECEPTOR KINASE); kinase  note ARABIDOPSIS THALIANA LECTIN-RECEPTOR KINASE (ATHLECRK); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, LP.10 ten leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: receptor lectin kinase 3 (lecRK3) (TAIR:AT3G59740.1); Has 91206 Blast hits to 90079 proteins in 3448 species: Archae - 73; Bacteria - 8254; Metazoa - 39149; Fungi - 7362; Plants - 20191; Viruses - 420; Other Eukaryotes - 15757 (source: NCBI BLink).  protein_id AT3G59700.1p  transcript_id AT3G59700.1  protein_id AT3G59700.1p  transcript_id AT3G59700.1  
At3g59710	chr3:022057089	0.0	C/22057089-22057156,22056483-22056744,22056012-22056194,22055220-22055615	AT3G59710.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: leaf lamina base, root, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT5G51030.1); Has 39348 Blast hits to 39336 proteins in 1837 species: Archae - 289; Bacteria - 24067; Metazoa - 3588; Fungi - 1631; Plants - 1129; Viruses - 0; Other Eukaryotes - 8644 (source: NCBI BLink).  protein_id AT3G59710.1p  transcript_id AT3G59710.1  protein_id AT3G59710.1p  transcript_id AT3G59710.1  
At3g59720	chr3:022060005	0.0	W/22060005-22063902	AT3G59720.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.1e-214 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At3g59730	chr3:022064308	0.0	C/22064308-22065879	AT3G59730.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product receptor lectin kinase, putative  note receptor lectin kinase, putative; FUNCTIONS IN: carbohydrate binding, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: receptor lectin kinase 3 (lecRK3) (TAIR:AT3G59740.1); Has 83774 Blast hits to 82938 proteins in 3293 species: Archae - 50; Bacteria - 7370; Metazoa - 36479; Fungi - 6708; Plants - 18829; Viruses - 334; Other Eukaryotes - 14004 (source: NCBI BLink).  protein_id AT3G59730.1p  transcript_id AT3G59730.1  protein_id AT3G59730.1p  transcript_id AT3G59730.1  
At3g59740	chr3:022067079	0.0	C/22067079-22069058	AT3G59740.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product receptor lectin kinase 3 (lecRK3)  note receptor lectin kinase 3 (lecRK3); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: ATHLECRK (ARABIDOPSIS THALIANA LECTIN-RECEPTOR KINASE); kinase (TAIR:AT3G59700.1); Has 89299 Blast hits to 88278 proteins in 3315 species: Archae - 69; Bacteria - 8085; Metazoa - 38483; Fungi - 7115; Plants - 19769; Viruses - 408; Other Eukaryotes - 15370 (source: NCBI BLink).  protein_id AT3G59740.1p  transcript_id AT3G59740.1  protein_id AT3G59740.1p  transcript_id AT3G59740.1  
At3g59750	chr3:022071384	0.0	C/22071384-22071821,22069855-22071297	AT3G59750.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product receptor lectin kinase, putative  note receptor lectin kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: receptor lectin kinase 3 (lecRK3) (TAIR:AT3G59740.1); Has 89875 Blast hits to 88716 proteins in 3325 species: Archae - 69; Bacteria - 8157; Metazoa - 38834; Fungi - 7308; Plants - 19370; Viruses - 411; Other Eukaryotes - 15726 (source: NCBI BLink).  protein_id AT3G59750.1p  transcript_id AT3G59750.1  protein_id AT3G59750.1p  transcript_id AT3G59750.1  
At3g59760	chr3:022074989	0.0	C/22074989-22075345,22074719-22074828,22074575-22074632,22074181-22074444,22073781-22073918,22073602-22073653,22073423-22073502,22073212-22073271,22072997-22073090,22072661-22072746	AT3G59760.2  CDS  gene_syn ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, ATCS-C, CSASE C, O-ACETYLSERINE (THIOL) LYASE ISOFORM C, OASC  gene OASC  function Arabidopsis thaliana O-acetylserine (thiol) lyase (OAS-TL) isoform oasC  go_component mitochondrion|GO:0005739|17137349|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|10940562|TAS  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process cysteine biosynthetic process|GO:0019344|10940562|IDA  go_process pollen tube development|GO:0048868|19237690|IMP  go_function cysteine synthase activity|GO:0004124|10940562|IDA  go_function cysteine synthase activity|GO:0004124||ISS  product OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C); ATP binding / cysteine synthase  note O-ACETYLSERINE (THIOL) LYASE ISOFORM C (OASC); FUNCTIONS IN: cysteine synthase activity, ATP binding; INVOLVED IN: cysteine biosynthetic process, pollen tube development; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (InterPro:IPR001216), Cysteine synthase A (InterPro:IPR005859), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Cysteine synthase K/M (InterPro:IPR005856); BEST Arabidopsis thaliana protein match is: OASB (O-ACETYLSERINE (THIOL) LYASE B); cysteine synthase (TAIR:AT2G43750.1); Has 14442 Blast hits to 14426 proteins in 1497 species: Archae - 241; Bacteria - 8467; Metazoa - 374; Fungi - 419; Plants - 369; Viruses - 0; Other Eukaryotes - 4572 (source: NCBI BLink).  protein_id AT3G59760.2p  transcript_id AT3G59760.2  protein_id AT3G59760.2p  transcript_id AT3G59760.2  
At3g59760	chr3:022074989	0.0	C/22074989-22075345,22074719-22074828,22074575-22074632,22074181-22074444,22073781-22073918,22073602-22073653,22073423-22073502,22073212-22073271,22073010-22073090,22072668-22072760	AT3G59760.3  CDS  gene_syn ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, ATCS-C, CSASE C, O-ACETYLSERINE (THIOL) LYASE ISOFORM C, OASC  gene OASC  function Arabidopsis thaliana O-acetylserine (thiol) lyase (OAS-TL) isoform oasC  go_component mitochondrion|GO:0005739|17137349|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|10940562|TAS  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process cysteine biosynthetic process|GO:0019344|10940562|IDA  go_process pollen tube development|GO:0048868|19237690|IMP  go_function cysteine synthase activity|GO:0004124|10940562|IDA  go_function cysteine synthase activity|GO:0004124||ISS  product OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C); ATP binding / cysteine synthase  note O-ACETYLSERINE (THIOL) LYASE ISOFORM C (OASC); FUNCTIONS IN: cysteine synthase activity, ATP binding; INVOLVED IN: cysteine biosynthetic process, pollen tube development; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (InterPro:IPR001216), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Cysteine synthase A (InterPro:IPR005859), Cysteine synthase K/M (InterPro:IPR005856); BEST Arabidopsis thaliana protein match is: OASB (O-ACETYLSERINE (THIOL) LYASE B); cysteine synthase (TAIR:AT2G43750.1); Has 14322 Blast hits to 14306 proteins in 1494 species: Archae - 232; Bacteria - 8284; Metazoa - 372; Fungi - 424; Plants - 370; Viruses - 0; Other Eukaryotes - 4640 (source: NCBI BLink).  protein_id AT3G59760.3p  transcript_id AT3G59760.3  protein_id AT3G59760.3p  transcript_id AT3G59760.3  
At3g59760	chr3:022074989	0.0	C/22074989-22075345,22074719-22074828,22074575-22074632,22074181-22074444,22073781-22073918,22073602-22073653,22073423-22073502,22073212-22073271,22073010-22073090,22072674-22072760,22072119-22072133	AT3G59760.1  CDS  gene_syn ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, ATCS-C, CSASE C, O-ACETYLSERINE (THIOL) LYASE ISOFORM C, OASC  gene OASC  function Arabidopsis thaliana O-acetylserine (thiol) lyase (OAS-TL) isoform oasC  go_component mitochondrion|GO:0005739|17137349|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|10940562|TAS  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process cysteine biosynthetic process|GO:0019344|10940562|IDA  go_process pollen tube development|GO:0048868|19237690|IMP  go_function cysteine synthase activity|GO:0004124|10940562|IDA  go_function cysteine synthase activity|GO:0004124||ISS  product OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C); ATP binding / cysteine synthase  note O-ACETYLSERINE (THIOL) LYASE ISOFORM C (OASC); FUNCTIONS IN: cysteine synthase activity, ATP binding; INVOLVED IN: cysteine biosynthetic process, pollen tube development; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (InterPro:IPR001216), Cysteine synthase A (InterPro:IPR005859), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Cysteine synthase K/M (InterPro:IPR005856); BEST Arabidopsis thaliana protein match is: OASB (O-ACETYLSERINE (THIOL) LYASE B); cysteine synthase (TAIR:AT2G43750.1); Has 14317 Blast hits to 14301 proteins in 1494 species: Archae - 232; Bacteria - 8281; Metazoa - 372; Fungi - 422; Plants - 370; Viruses - 0; Other Eukaryotes - 4640 (source: NCBI BLink).  protein_id AT3G59760.1p  transcript_id AT3G59760.1  protein_id AT3G59760.1p  transcript_id AT3G59760.1  
At3g59765	chr3:022076461	0.0	C/22076461-22078339	AT3G59765.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G59765.1  
At3g59770	chr3:022084713	0.0	C/22084713-22084785,22083383-22084602,22083013-22083120,22082751-22082921,22082390-22082632,22081808-22082251,22080849-22081652,22080531-22080728,22079985-22080425,22079660-22079893,22079281-22079562	AT3G59770.2  CDS  gene_syn SAC9  gene SAC9  function Encodes a phosphoinositide phosphatase. The sac9 null mutant accumulates elevated levels of PtdIns(4,5)P2 and Ins(1,4,5)P3. The mutant plants have characteristics of constitutive stress responses.  go_process response to osmotic stress|GO:0006970|15923324|IMP  go_process response to cold|GO:0009409|15923324|NAS  go_process response to high light intensity|GO:0009644|15923324|NAS  go_process phosphatidylinositol metabolic process|GO:0046488|15923324|IMP  go_process phosphoinositide-mediated signaling|GO:0048015|15923324|TAS  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437|15923324|ISS  product SAC9; inositol or phosphatidylinositol phosphatase  note SAC9; FUNCTIONS IN: inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: phosphatidylinositol metabolic process, response to high light intensity, response to cold, phosphoinositide-mediated signaling, response to osmotic stress; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WW/Rsp5/WWP (InterPro:IPR001202), Synaptojanin, N-terminal (InterPro:IPR002013); BEST Arabidopsis thaliana protein match is: phosphoinositide phosphatase family protein (TAIR:AT1G17340.1); Has 2844 Blast hits to 1897 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 1943; Fungi - 527; Plants - 134; Viruses - 0; Other Eukaryotes - 240 (source: NCBI BLink).  protein_id AT3G59770.2p  transcript_id AT3G59770.2  protein_id AT3G59770.2p  transcript_id AT3G59770.2  
At3g59770	chr3:022085656	0.0	C/22085656-22085674,22084967-22085562,22084713-22084845,22083383-22084602,22083013-22083120,22082751-22082921,22082390-22082632,22081808-22082251,22080849-22081652,22080531-22080728,22079985-22080425,22079660-22079893,22079281-22079562	AT3G59770.1  CDS  gene_syn SAC9  gene SAC9  function Encodes a phosphoinositide phosphatase. The sac9 null mutant accumulates elevated levels of PtdIns(4,5)P2 and Ins(1,4,5)P3. The mutant plants have characteristics of constitutive stress responses.  go_process response to osmotic stress|GO:0006970|15923324|IMP  go_process response to cold|GO:0009409|15923324|NAS  go_process response to high light intensity|GO:0009644|15923324|NAS  go_process phosphatidylinositol metabolic process|GO:0046488|15923324|IMP  go_process phosphoinositide-mediated signaling|GO:0048015|15923324|TAS  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437|15923324|ISS  product SAC9; inositol or phosphatidylinositol phosphatase  note SAC9; FUNCTIONS IN: inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: phosphatidylinositol metabolic process, response to high light intensity, response to cold, phosphoinositide-mediated signaling, response to osmotic stress; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WW/Rsp5/WWP (InterPro:IPR001202), Synaptojanin, N-terminal (InterPro:IPR002013); BEST Arabidopsis thaliana protein match is: phosphoinositide phosphatase family protein (TAIR:AT1G17340.1); Has 3028 Blast hits to 2073 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 2031; Fungi - 569; Plants - 147; Viruses - 0; Other Eukaryotes - 281 (source: NCBI BLink).  protein_id AT3G59770.1p  transcript_id AT3G59770.1  protein_id AT3G59770.1p  transcript_id AT3G59770.1  
At3g59778	chr3:022086478	0.0	W/22086478-22086910	AT3G59778.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G59778.1  
At3g59780	chr3:022087345	0.0	W/22087345-22088121,22088218-22088318,22088418-22088532,22088684-22088863,22088929-22089021,22089133-22089181,22089329-22089408,22089521-22089583,22089660-22089690,22089801-22089847,22089931-22089989,22090087-22090324	AT3G59780.1  CDS  go_component nucleus|GO:0005634|14617066|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: guard cell; BEST Arabidopsis thaliana protein match is: CaS (Calcium sensing receptor) (TAIR:AT5G23060.1); Has 1338 Blast hits to 316 proteins in 95 species: Archae - 0; Bacteria - 274; Metazoa - 264; Fungi - 88; Plants - 42; Viruses - 4; Other Eukaryotes - 666 (source: NCBI BLink).  protein_id AT3G59780.1p  transcript_id AT3G59780.1  protein_id AT3G59780.1p  transcript_id AT3G59780.1  
At3g59790	chr3:022092448	0.0	W/22092448-22092671,22092944-22093073,22093164-22093301,22093385-22093717,22093810-22093990,22094065-22094240	AT3G59790.1  CDS  gene_syn ATMPK10  gene ATMPK10  function member of MAP Kinase  go_process signal transduction|GO:0007165|12119167|IC  go_function MAP kinase activity|GO:0004707|11544109|ISS  go_function MAP kinase activity|GO:0004707|12119167|ISS  go_function kinase activity|GO:0016301||ISS  product ATMPK10; MAP kinase/ kinase  note ATMPK10; FUNCTIONS IN: MAP kinase activity, kinase activity; INVOLVED IN: signal transduction; EXPRESSED IN: shoot, leaf; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), JNK MAP kinase (InterPro:IPR008351), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6); MAP kinase/ kinase (TAIR:AT2G43790.1); Has 89913 Blast hits to 88867 proteins in 3292 species: Archae - 47; Bacteria - 7180; Metazoa - 39884; Fungi - 8238; Plants - 16931; Viruses - 431; Other Eukaryotes - 17202 (source: NCBI BLink).  protein_id AT3G59790.1p  transcript_id AT3G59790.1  protein_id AT3G59790.1p  transcript_id AT3G59790.1  
At3g59800	chr3:022096088	0.0	C/22096088-22096174,22095583-22095684,22095017-22095152,22094879-22094925,22094597-22094785	AT3G59800.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G43795.2); Has 15087 Blast hits to 7528 proteins in 371 species: Archae - 2; Bacteria - 376; Metazoa - 7762; Fungi - 1206; Plants - 781; Viruses - 48; Other Eukaryotes - 4912 (source: NCBI BLink).  protein_id AT3G59800.1p  transcript_id AT3G59800.1  protein_id AT3G59800.1p  transcript_id AT3G59800.1  
At3g59810	chr3:022096841	0.0	W/22096841-22096955,22097421-22097534,22097620-22097666	AT3G59810.1  CDS  go_component nucleus|GO:0005634||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_function molecular_function|GO:0003674||ND  product small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative  note small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative; FUNCTIONS IN: molecular_function unknown; LOCATED IN: small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative (TAIR:AT2G43810.2); Has 852 Blast hits to 852 proteins in 207 species: Archae - 243; Bacteria - 0; Metazoa - 218; Fungi - 185; Plants - 74; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).  protein_id AT3G59810.1p  transcript_id AT3G59810.1  protein_id AT3G59810.1p  transcript_id AT3G59810.1  
At3g59820	chr3:022101179	0.0	C/22101179-22101759,22100779-22101091,22100538-22100684,22100350-22100438,22100161-22100253,22099948-22100074,22099769-22099833,22099508-22099682,22099205-22099399,22099063-22099110,22098843-22098989,22098673-22098755,22098476-22098591,22098289-22098392	AT3G59820.2  CDS  go_component mitochondrion|GO:0005739|14671022|IDA  product calcium-binding mitochondrial protein-related  note calcium-binding mitochondrial protein-related; LOCATED IN: mitochondrion; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), LETM1-like (InterPro:IPR011685); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT1G65540.1); Has 1240 Blast hits to 1176 proteins in 239 species: Archae - 16; Bacteria - 123; Metazoa - 520; Fungi - 173; Plants - 88; Viruses - 5; Other Eukaryotes - 315 (source: NCBI BLink).  protein_id AT3G59820.2p  transcript_id AT3G59820.2  protein_id AT3G59820.2p  transcript_id AT3G59820.2  
At3g59820	chr3:022101179	0.0	C/22101179-22101759,22100779-22101091,22100538-22100684,22100350-22100438,22100161-22100253,22099948-22100074,22099769-22099833,22099508-22099682,22099205-22099399,22099063-22099110,22098843-22098989,22098673-22098755,22098476-22098591,22098306-22098394	AT3G59820.1  CDS  go_component mitochondrion|GO:0005739|15276431|IDA  go_function calcium ion binding|GO:0005509||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  product calcium-binding mitochondrial protein-related  note calcium-binding mitochondrial protein-related; FUNCTIONS IN: calcium ion binding; LOCATED IN: mitochondrion; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), LETM1-like (InterPro:IPR011685); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT1G65540.1); Has 1389 Blast hits to 1326 proteins in 240 species: Archae - 20; Bacteria - 120; Metazoa - 610; Fungi - 174; Plants - 115; Viruses - 5; Other Eukaryotes - 345 (source: NCBI BLink).  protein_id AT3G59820.1p  transcript_id AT3G59820.1  protein_id AT3G59820.1p  transcript_id AT3G59820.1  
At3g59830	chr3:022104892	0.0	C/22104892-22105323,22104738-22104812,22104556-22104660,22104377-22104462,22104159-22104279,22103927-22104069,22103723-22103844,22103533-22103618,22103319-22103443,22103102-22103233,22103006-22103012	AT3G59830.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process regulation of signal transduction|GO:0009966||IEA  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  product ankyrin protein kinase, putative  note ankyrin protein kinase, putative; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: regulation of signal transduction, protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Integrin-linked protein kinase (InterPro:IPR016253), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin protein kinase, putative (APK1) (TAIR:AT2G43850.1); Has 114512 Blast hits to 89896 proteins in 2705 species: Archae - 86; Bacteria - 7996; Metazoa - 55783; Fungi - 7774; Plants - 17883; Viruses - 569; Other Eukaryotes - 24421 (source: NCBI BLink).  protein_id AT3G59830.1p  transcript_id AT3G59830.1  protein_id AT3G59830.1p  transcript_id AT3G59830.1  
At3g59840	chr3:022105853	0.0	C/22105853-22106146	AT3G59840.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 54 Blast hits to 54 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G59840.1p  transcript_id AT3G59840.1  protein_id AT3G59840.1p  transcript_id AT3G59840.1  
At3g59845	chr3:022107296	0.0	C/22107296-22107407,22107046-22107212,22106871-22106953,22106421-22106793	AT3G59845.2  CDS  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process response to oxidative stress|GO:0006979|7592828|IEP  product NADP-dependent oxidoreductase, putative  note NADP-dependent oxidoreductase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: response to oxidative stress; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: NADP-dependent oxidoreductase, putative (TAIR:AT3G03080.1); Has 10355 Blast hits to 10342 proteins in 1012 species: Archae - 58; Bacteria - 4670; Metazoa - 638; Fungi - 676; Plants - 278; Viruses - 0; Other Eukaryotes - 4035 (source: NCBI BLink).  protein_id AT3G59845.2p  transcript_id AT3G59845.2  protein_id AT3G59845.2p  transcript_id AT3G59845.2  
At3g59845	chr3:022107546	0.0	C/22107546-22107785,22107296-22107473,22107046-22107212,22106871-22106953,22106421-22106793	AT3G59845.1  CDS  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process response to oxidative stress|GO:0006979|7592828|IEP  product NADP-dependent oxidoreductase, putative  note NADP-dependent oxidoreductase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: response to oxidative stress; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: NADP-dependent oxidoreductase, putative (TAIR:AT5G17000.1); Has 11156 Blast hits to 11133 proteins in 1033 species: Archae - 60; Bacteria - 5082; Metazoa - 714; Fungi - 717; Plants - 291; Viruses - 0; Other Eukaryotes - 4292 (source: NCBI BLink).  protein_id AT3G59845.1p  transcript_id AT3G59845.1  protein_id AT3G59845.1p  transcript_id AT3G59845.1  
At3g59850	chr3:022111138	0.0	C/22111138-22111566,22110346-22110635,22109657-22109885,22109343-22109561	AT3G59850.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product polygalacturonase, putative / pectinase, putative  note polygalacturonase, putative / pectinase, putative; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: polygalacturonase, putative / pectinase, putative (TAIR:AT2G43870.1); Has 2584 Blast hits to 2576 proteins in 350 species: Archae - 2; Bacteria - 476; Metazoa - 8; Fungi - 1130; Plants - 891; Viruses - 2; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT3G59850.1p  transcript_id AT3G59850.1  protein_id AT3G59850.1p  transcript_id AT3G59850.1  
At3g59860	chr3:022113851	0.0	C/22113851-22114908	AT3G59860.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 8.4e-21 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At3g59870	chr3:022117852	0.0	C/22117852-22118052,22117288-22117491,22117083-22117199,22116841-22116990,22116633-22116691,22116361-22116496	AT3G59870.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G43945.1); Has 245 Blast hits to 245 proteins in 63 species: Archae - 0; Bacteria - 102; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT3G59870.1p  transcript_id AT3G59870.1  protein_id AT3G59870.1p  transcript_id AT3G59870.1  
At3g59880	chr3:022121069	0.0	W/22121069-22121446	AT3G59880.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G44010.1); Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G59880.1p  transcript_id AT3G59880.1  protein_id AT3G59880.1p  transcript_id AT3G59880.1  
At3g59884	chr3:022122796	0.0	C/22122796-22122899	AT3G59884.1  miRNA  gene_syn MICRORNA827A, MIR827A  gene MIR827A  function Encodes a microRNA that targets several SPX C3HC4 RING zinc finger family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUAGAUGACCAUCAACAAACU  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR827A (MICRORNA827A); miRNA  transcript_id AT3G59884.1  
At3g59890	chr3:022126154	0.0	C/22126154-22126369,22125696-22125933,22125383-22125516,22125221-22125295,22125045-22125146,22124846-22124955,22124647-22124734,22124497-22124565	AT3G59890.2  CDS  go_component cytoplasm|GO:0005737||IEA  go_component chloroplast|GO:0009507||IEA  go_process metabolic process|GO:0008152||IEA  go_process lysine biosynthetic process via diaminopimelate|GO:0009089||IEA  go_process diaminopimelate biosynthetic process|GO:0019877||IEA  go_process oxidation reduction|GO:0055114||IEA  go_process lysine biosynthetic process via diaminopimelate|GO:0009089||ISS  go_function dihydrodipicolinate reductase activity|GO:0008839|15652176|IGI  go_function dihydrodipicolinate reductase activity|GO:0008839||ISS  product dihydrodipicolinate reductase family protein  note dihydrodipicolinate reductase family protein; FUNCTIONS IN: dihydrodipicolinate reductase activity; INVOLVED IN: oxidation reduction, lysine biosynthetic process via diaminopimelate, diaminopimelate biosynthetic process, metabolic process; LOCATED IN: chloroplast, cytoplasm; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Dihydrodipicolinate reductase, plant (InterPro:IPR011859), Dihydrodipicolinate reductase, bacterial and plant (InterPro:IPR011770), Dihydrodipicolinate reductase (InterPro:IPR000846); BEST Arabidopsis thaliana protein match is: dihydrodipicolinate reductase family protein (TAIR:AT2G44040.1); Has 1942 Blast hits to 1941 proteins in 720 species: Archae - 80; Bacteria - 1446; Metazoa - 2; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 366 (source: NCBI BLink).  protein_id AT3G59890.2p  transcript_id AT3G59890.2  protein_id AT3G59890.2p  transcript_id AT3G59890.2  
At3g59890	chr3:022126478	0.0	C/22126478-22126491,22126154-22126373,22125696-22125933,22125383-22125516,22125221-22125295,22125045-22125146,22124846-22124955,22124647-22124734,22124497-22124565	AT3G59890.1  CDS  go_component cytoplasm|GO:0005737||IEA  go_component chloroplast|GO:0009507||IEA  go_process metabolic process|GO:0008152||IEA  go_process lysine biosynthetic process via diaminopimelate|GO:0009089||IEA  go_process diaminopimelate biosynthetic process|GO:0019877||IEA  go_process oxidation reduction|GO:0055114||IEA  go_process lysine biosynthetic process via diaminopimelate|GO:0009089||ISS  go_function dihydrodipicolinate reductase activity|GO:0008839|15652176|IGI  go_function dihydrodipicolinate reductase activity|GO:0008839||ISS  product dihydrodipicolinate reductase family protein  note dihydrodipicolinate reductase family protein; FUNCTIONS IN: dihydrodipicolinate reductase activity; INVOLVED IN: oxidation reduction, lysine biosynthetic process via diaminopimelate, diaminopimelate biosynthetic process, metabolic process; LOCATED IN: chloroplast, cytoplasm; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Dihydrodipicolinate reductase, plant (InterPro:IPR011859), Dihydrodipicolinate reductase (InterPro:IPR000846), Dihydrodipicolinate reductase, bacterial and plant (InterPro:IPR011770); BEST Arabidopsis thaliana protein match is: dihydrodipicolinate reductase family protein (TAIR:AT2G44040.1); Has 1942 Blast hits to 1941 proteins in 720 species: Archae - 80; Bacteria - 1446; Metazoa - 2; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 366 (source: NCBI BLink).  protein_id AT3G59890.1p  transcript_id AT3G59890.1  protein_id AT3G59890.1p  transcript_id AT3G59890.1  
At3g59900	chr3:022130041	0.0	W/22130041-22130433	AT3G59900.1  CDS  gene_syn ARGOS, AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE  gene ARGOS  function Encodes ARGOS (Auxin-Regulated Gene Involved in Organ Size). Inducible by auxin. Involved in lateral organ size control. Transgenic plants expressing sense or antisense ARGOS cDNA display enlarged or reduced aerial organs, respectively. The alteration in organ size is attributable mainly to changes in cell number and the duration of organ growth.  go_component intracellular|GO:0005622|16824178|IDA  go_process response to auxin stimulus|GO:0009733|12953103|IEP  go_process regulation of cell proliferation|GO:0042127|12953103|IMP  go_process positive regulation of organ growth|GO:0046622|12953103|IMP  go_process regulation of developmental growth|GO:0048638|12953103|IMP  go_function molecular_function|GO:0003674||ND  product ARGOS (AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE)  note AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE (ARGOS); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: positive regulation of organ growth, response to auxin stimulus, regulation of cell proliferation, regulation of developmental growth; LOCATED IN: intracellular; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: ARL (ARGOS-LIKE) (TAIR:AT2G44080.1); Has 67 Blast hits to 67 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G59900.1p  transcript_id AT3G59900.1  protein_id AT3G59900.1p  transcript_id AT3G59900.1  
At3g59910	chr3:022132429	0.0	C/22132429-22133033,22131657-22132089,22130779-22131576	AT3G59910.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G44090.2); Has 43 Blast hits to 43 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G59910.1p  transcript_id AT3G59910.1  protein_id AT3G59910.1p  transcript_id AT3G59910.1  
At3g59920	chr3:022135157	0.0	W/22135157-22135243,22135561-22135707,22135797-22135904,22135998-22136170,22136267-22136378,22136475-22136555,22136662-22136724,22136858-22136959,22137235-22137359,22137693-22137903,22137990-22138064,22138171-22138221	AT3G59920.1  CDS  gene_syn ATGDI2, RAB GDP DISSOCIATION INHIBITOR 2  gene ATGDI2  function RAB GDP DISSOCIATION INHIBITOR 2  go_process protein transport|GO:0015031||IEA  go_process regulation of GTPase activity|GO:0043087||IEA  go_function RAB GDP-dissociation inhibitor activity|GO:0005093||IEA  go_component cellular_component|GO:0005575||ND  go_process protein transport|GO:0015031||ISS  go_function RAB GDP-dissociation inhibitor activity|GO:0005093||ISS  product ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2); RAB GDP-dissociation inhibitor  note RAB GDP DISSOCIATION INHIBITOR 2 (ATGDI2); FUNCTIONS IN: RAB GDP-dissociation inhibitor activity; INVOLVED IN: regulation of GTPase activity, protein transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rab GTPase activator (InterPro:IPR002005), GDP dissociation inhibitor (InterPro:IPR018203), Rab GDI protein (InterPro:IPR000806); BEST Arabidopsis thaliana protein match is: ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1); RAB GDP-dissociation inhibitor (TAIR:AT2G44100.1); Has 1045 Blast hits to 955 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 596; Fungi - 190; Plants - 109; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).  protein_id AT3G59920.1p  transcript_id AT3G59920.1  protein_id AT3G59920.1p  transcript_id AT3G59920.1  
At3g59923	chr3:022138723	0.0	W/22138723-22138796	AT3G59923.1  tRNA  gene_syn 67311.TRNA-VAL-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Val (anticodon: AAC)  transcript_id AT3G59923.1  
At3g59926	chr3:022138847	0.0	C/22138847-22138918	AT3G59926.1  tRNA  gene_syn 67311.TRNA-ASP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asp (anticodon: GTC)  transcript_id AT3G59926.1  
At3g59930	chr3:022140061	0.0	C/22140061-22140127,22139772-22139947	AT3G59930.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G33355.1); Has 13 Blast hits to 13 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G59930.1p  transcript_id AT3G59930.1  protein_id AT3G59930.1p  transcript_id AT3G59930.1  
At3g59940	chr3:022143009	0.0	W/22143009-22144265	AT3G59940.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT2G44130.1); Has 2119 Blast hits to 1745 proteins in 136 species: Archae - 4; Bacteria - 165; Metazoa - 1375; Fungi - 20; Plants - 457; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT3G59940.1p  transcript_id AT3G59940.1  protein_id AT3G59940.1p  transcript_id AT3G59940.1  
At3g59950	chr3:022146422	0.0	C/22146422-22146629,22146262-22146347,22146137-22146187,22145559-22146017	AT3G59950.3  CDS  go_process autophagy|GO:0006914||ISS  go_function peptidase activity|GO:0008233||ISS  product autophagy 4b (APG4b)  note autophagy 4b (APG4b); FUNCTIONS IN: peptidase activity; INVOLVED IN: autophagy; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C54 (InterPro:IPR005078); BEST Arabidopsis thaliana protein match is: autophagy 4a (APG4a) (TAIR:AT2G44140.2); Has 612 Blast hits to 612 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 349; Fungi - 111; Plants - 54; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT3G59950.3p  transcript_id AT3G59950.3  protein_id AT3G59950.3p  transcript_id AT3G59950.3  
At3g59950	chr3:022146422	0.0	C/22146422-22146887,22146262-22146347,22146137-22146187,22145638-22146017,22145252-22145390,22144943-22144998,22144782-22144852,22144468-22144652	AT3G59950.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process autophagy|GO:0006914||ISS  go_function peptidase activity|GO:0008233||ISS  product autophagy 4b (APG4b)  note autophagy 4b (APG4b); FUNCTIONS IN: peptidase activity; INVOLVED IN: autophagy; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C54 (InterPro:IPR005078); BEST Arabidopsis thaliana protein match is: autophagy 4a (APG4a) (TAIR:AT2G44140.1); Has 696 Blast hits to 670 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 373; Fungi - 127; Plants - 58; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).  protein_id AT3G59950.1p  transcript_id AT3G59950.1  protein_id AT3G59950.1p  transcript_id AT3G59950.1  
At3g59950	chr3:022146422	0.0	C/22146422-22146887,22146262-22146347,22146137-22146187,22145638-22146017,22145271-22145370	AT3G59950.2  CDS  go_component chloroplast|GO:0009507||IEA  go_process autophagy|GO:0006914||ISS  go_function peptidase activity|GO:0008233||ISS  product autophagy 4b (APG4b)  note autophagy 4b (APG4b); FUNCTIONS IN: peptidase activity; INVOLVED IN: autophagy; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C54 (InterPro:IPR005078); BEST Arabidopsis thaliana protein match is: autophagy 4a (APG4a) (TAIR:AT2G44140.1); Has 610 Blast hits to 610 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 349; Fungi - 113; Plants - 54; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).  protein_id AT3G59950.2p  transcript_id AT3G59950.2  protein_id AT3G59950.2p  transcript_id AT3G59950.2  
At3g59960	chr3:022148334	0.0	W/22148334-22148351,22148432-22148552,22148646-22148757,22148859-22148958,22149034-22149112,22149212-22149383,22149479-22149559,22149640-22149790,22149936-22150037,22150126-22150176,22150315-22150386	AT3G59960.1  CDS  gene_syn ASHH4, HISTONE-LYSINE N-METHYLTRANSFERASE ASHH4, SDG24, SET DOMAIN PROTEIN 24  gene ASHH4  go_component nucleus|GO:0005634||IEA  go_function histone-lysine N-methyltransferase activity|GO:0018024||IEA  go_process biological_process|GO:0008150||ND  product ASHH4 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH4); histone-lysine N-methyltransferase  note HISTONE-LYSINE N-METHYLTRANSFERASE ASHH4 (ASHH4); FUNCTIONS IN: histone-lysine N-methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), Post-SET zinc-binding region (InterPro:IPR003616), AWS (InterPro:IPR006560); BEST Arabidopsis thaliana protein match is: ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3); histone-lysine N-methyltransferase (TAIR:AT2G44150.1); Has 4117 Blast hits to 4053 proteins in 350 species: Archae - 2; Bacteria - 313; Metazoa - 1919; Fungi - 366; Plants - 543; Viruses - 0; Other Eukaryotes - 974 (source: NCBI BLink).  protein_id AT3G59960.1p  transcript_id AT3G59960.1  protein_id AT3G59960.1p  transcript_id AT3G59960.1  
At3g59970	chr3:022151303	0.0	W/22151303-22151765,22151858-22151940,22152035-22152208,22152430-22152603,22152704-22152804,22152911-22153022,22153254-22153334,22153430-22153607,22153819-22154153,22154246-22154323	AT3G59970.3  CDS  gene_syn METHYLENETETRAHYDROFOLATE REDUCTASE 1, MTHFR1  gene MTHFR1  function methylenetetrahydrofolate reductase MTHFR1 mRNA, complete  go_process methionine metabolic process|GO:0006555||IEA  go_function methylenetetrahydrofolate reductase (NADPH) activity|GO:0004489||IEA  go_process methionine metabolic process|GO:0006555||ISS  go_function methylenetetrahydrofolate reductase (NADPH) activity|GO:0004489||ISS  product MTHFR1 (METHYLENETETRAHYDROFOLATE REDUCTASE 1); methylenetetrahydrofolate reductase (NADPH)  note METHYLENETETRAHYDROFOLATE REDUCTASE 1 (MTHFR1); FUNCTIONS IN: methylenetetrahydrofolate reductase (NADPH) activity; INVOLVED IN: methionine metabolic process; EXPRESSED IN: fruit, guard cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Methylenetetrahydrofolate reductase (InterPro:IPR003171), Eukaryotic-type methylenetetrahydrofolate reductase (InterPro:IPR004621); BEST Arabidopsis thaliana protein match is: MTHFR2 (METHYLENETETRAHYDROFOLATE REDUCTASE 2); methylenetetrahydrofolate reductase (NADPH) (TAIR:AT2G44160.1); Has 2871 Blast hits to 2867 proteins in 1034 species: Archae - 10; Bacteria - 1885; Metazoa - 124; Fungi - 179; Plants - 44; Viruses - 0; Other Eukaryotes - 629 (source: NCBI BLink).  protein_id AT3G59970.3p  transcript_id AT3G59970.3  protein_id AT3G59970.3p  transcript_id AT3G59970.3  
At3g59970	chr3:022151303	0.0	W/22151303-22151765,22151858-22151940,22152035-22152208,22152430-22152603,22152704-22152804,22152911-22153022,22153254-22153334,22153954-22153989	AT3G59970.2  CDS  gene_syn METHYLENETETRAHYDROFOLATE REDUCTASE 1, MTHFR1  gene MTHFR1  function methylenetetrahydrofolate reductase MTHFR1 mRNA, complete  go_process methionine metabolic process|GO:0006555||IEA  go_function methylenetetrahydrofolate reductase (NADPH) activity|GO:0004489||IEA  go_process methionine metabolic process|GO:0006555||ISS  go_function methylenetetrahydrofolate reductase (NADPH) activity|GO:0004489||ISS  product MTHFR1 (METHYLENETETRAHYDROFOLATE REDUCTASE 1); methylenetetrahydrofolate reductase (NADPH)  note METHYLENETETRAHYDROFOLATE REDUCTASE 1 (MTHFR1); FUNCTIONS IN: methylenetetrahydrofolate reductase (NADPH) activity; INVOLVED IN: methionine metabolic process; EXPRESSED IN: fruit, guard cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Methylenetetrahydrofolate reductase (InterPro:IPR003171), Eukaryotic-type methylenetetrahydrofolate reductase (InterPro:IPR004621); BEST Arabidopsis thaliana protein match is: MTHFR2 (METHYLENETETRAHYDROFOLATE REDUCTASE 2); methylenetetrahydrofolate reductase (NADPH) (TAIR:AT2G44160.1); Has 2857 Blast hits to 2856 proteins in 1033 species: Archae - 10; Bacteria - 1885; Metazoa - 120; Fungi - 177; Plants - 41; Viruses - 0; Other Eukaryotes - 624 (source: NCBI BLink).  protein_id AT3G59970.2p  transcript_id AT3G59970.2  protein_id AT3G59970.2p  transcript_id AT3G59970.2  
At3g59970	chr3:022151303	0.0	W/22151303-22151765,22151858-22151940,22152035-22152208,22152430-22152603,22152704-22152804,22152911-22153022,22153254-22153412	AT3G59970.1  CDS  gene_syn METHYLENETETRAHYDROFOLATE REDUCTASE 1, MTHFR1  gene MTHFR1  function methylenetetrahydrofolate reductase MTHFR1 mRNA, complete  go_process methionine metabolic process|GO:0006555||IEA  go_function methylenetetrahydrofolate reductase (NADPH) activity|GO:0004489||IEA  go_process methionine metabolic process|GO:0006555||ISS  go_function methylenetetrahydrofolate reductase (NADPH) activity|GO:0004489||ISS  product MTHFR1 (METHYLENETETRAHYDROFOLATE REDUCTASE 1); methylenetetrahydrofolate reductase (NADPH)  note METHYLENETETRAHYDROFOLATE REDUCTASE 1 (MTHFR1); FUNCTIONS IN: methylenetetrahydrofolate reductase (NADPH) activity; INVOLVED IN: methionine metabolic process; EXPRESSED IN: fruit, guard cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Methylenetetrahydrofolate reductase (InterPro:IPR003171), Eukaryotic-type methylenetetrahydrofolate reductase (InterPro:IPR004621); BEST Arabidopsis thaliana protein match is: MTHFR2 (METHYLENETETRAHYDROFOLATE REDUCTASE 2); methylenetetrahydrofolate reductase (NADPH) (TAIR:AT2G44160.1); Has 2857 Blast hits to 2856 proteins in 1033 species: Archae - 10; Bacteria - 1885; Metazoa - 120; Fungi - 177; Plants - 41; Viruses - 0; Other Eukaryotes - 624 (source: NCBI BLink).  protein_id AT3G59970.1p  transcript_id AT3G59970.1  protein_id AT3G59970.1p  transcript_id AT3G59970.1  
At3g59980	chr3:022155100	0.0	C/22155100-22155570,22154762-22154968,22154528-22154671	AT3G59980.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_function tRNA binding|GO:0000049||IEA  go_function tRNA binding|GO:0000049||ISS  product tRNA-binding region domain-containing protein  note tRNA-binding region domain-containing protein; FUNCTIONS IN: tRNA binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), tRNA-binding region (InterPro:IPR002547); BEST Arabidopsis thaliana protein match is: methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (TAIR:AT4G13780.1); Has 3475 Blast hits to 3475 proteins in 1155 species: Archae - 175; Bacteria - 2251; Metazoa - 245; Fungi - 107; Plants - 79; Viruses - 0; Other Eukaryotes - 618 (source: NCBI BLink).  protein_id AT3G59980.1p  transcript_id AT3G59980.1  protein_id AT3G59980.1p  transcript_id AT3G59980.1  
At3g59990	chr3:022158386	0.0	C/22158386-22158551,22158107-22158149,22157913-22158020,22157578-22157677,22157354-22157499,22157165-22157256,22156990-22157084,22156680-22156776,22156439-22156582,22156126-22156343,22155921-22156031	AT3G59990.1  CDS  gene_syn MAP2B, METHIONINE AMINOPEPTIDASE 2B  gene MAP2B  function Encodes a MAP2 like methionine aminopeptidase  go_function aminopeptidase activity|GO:0004177||IEA  go_function metalloexopeptidase activity|GO:0008235||IEA  go_component cytoplasm|GO:0005737|11060042|IDA  go_process protein processing|GO:0016485|11060042|TAS  product MAP2B (METHIONINE AMINOPEPTIDASE 2B); aminopeptidase/ metalloexopeptidase  note METHIONINE AMINOPEPTIDASE 2B (MAP2B); FUNCTIONS IN: metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: protein processing; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24A, methionine aminopeptidase, subfamily 2 (InterPro:IPR002468), Peptidase M24, structural domain (InterPro:IPR000994), Peptidase M24A, methionine aminopeptidase, subfamily 2, binding site (InterPro:IPR018349), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: MAP2A (METHIONINE AMINOPEPTIDASE 2A); aminopeptidase/ metalloexopeptidase (TAIR:AT2G44180.1); Has 3671 Blast hits to 3631 proteins in 994 species: Archae - 146; Bacteria - 1684; Metazoa - 499; Fungi - 227; Plants - 99; Viruses - 0; Other Eukaryotes - 1016 (source: NCBI BLink).  protein_id AT3G59990.1p  transcript_id AT3G59990.1  protein_id AT3G59990.1p  transcript_id AT3G59990.1  
At3g59990	chr3:022158386	0.0	C/22158386-22158551,22158107-22158149,22157913-22158020,22157578-22157677,22157354-22157499,22157165-22157256,22156990-22157084,22156680-22156776,22156439-22156582,22156126-22156343,22155921-22156031	AT3G59990.2  CDS  gene_syn MAP2B, METHIONINE AMINOPEPTIDASE 2B  gene MAP2B  function Encodes a MAP2 like methionine aminopeptidase  go_function aminopeptidase activity|GO:0004177||IEA  go_function metalloexopeptidase activity|GO:0008235||IEA  go_component cytoplasm|GO:0005737|11060042|IDA  go_process protein processing|GO:0016485|11060042|TAS  product MAP2B (METHIONINE AMINOPEPTIDASE 2B); aminopeptidase/ metalloexopeptidase  note METHIONINE AMINOPEPTIDASE 2B (MAP2B); FUNCTIONS IN: metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: protein processing; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24A, methionine aminopeptidase, subfamily 2 (InterPro:IPR002468), Peptidase M24, structural domain (InterPro:IPR000994), Peptidase M24A, methionine aminopeptidase, subfamily 2, binding site (InterPro:IPR018349), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: MAP2A (METHIONINE AMINOPEPTIDASE 2A); aminopeptidase/ metalloexopeptidase (TAIR:AT2G44180.1); Has 3671 Blast hits to 3631 proteins in 994 species: Archae - 146; Bacteria - 1684; Metazoa - 499; Fungi - 227; Plants - 99; Viruses - 0; Other Eukaryotes - 1016 (source: NCBI BLink).  protein_id AT3G59990.2p  transcript_id AT3G59990.2  protein_id AT3G59990.2p  transcript_id AT3G59990.2  
At3g59990	chr3:022158386	0.0	C/22158386-22158551,22158107-22158149,22157913-22158020,22157578-22157677,22157354-22157499,22157165-22157256,22156990-22157084,22156680-22156776,22156439-22156582,22156126-22156343,22155921-22156031	AT3G59990.3  CDS  gene_syn MAP2B, METHIONINE AMINOPEPTIDASE 2B  gene MAP2B  function Encodes a MAP2 like methionine aminopeptidase  go_function aminopeptidase activity|GO:0004177||IEA  go_function metalloexopeptidase activity|GO:0008235||IEA  go_component cytoplasm|GO:0005737|11060042|IDA  go_process protein processing|GO:0016485|11060042|TAS  product MAP2B (METHIONINE AMINOPEPTIDASE 2B); aminopeptidase/ metalloexopeptidase  note METHIONINE AMINOPEPTIDASE 2B (MAP2B); FUNCTIONS IN: metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: protein processing; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24A, methionine aminopeptidase, subfamily 2 (InterPro:IPR002468), Peptidase M24, structural domain (InterPro:IPR000994), Peptidase M24A, methionine aminopeptidase, subfamily 2, binding site (InterPro:IPR018349), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: MAP2A (METHIONINE AMINOPEPTIDASE 2A); aminopeptidase/ metalloexopeptidase (TAIR:AT2G44180.1); Has 3671 Blast hits to 3631 proteins in 994 species: Archae - 146; Bacteria - 1684; Metazoa - 499; Fungi - 227; Plants - 99; Viruses - 0; Other Eukaryotes - 1016 (source: NCBI BLink).  protein_id AT3G59990.3p  transcript_id AT3G59990.3  protein_id AT3G59990.3p  transcript_id AT3G59990.3  
At3g60000	chr3:022160930	0.0	W/22160930-22161781,22161871-22161990,22162081-22162197,22162282-22162371,22162465-22162572,22162700-22162768	AT3G60000.2  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF566 (InterPro:IPR007573); BEST Arabidopsis thaliana protein match is: EDE1 (ENDOSPERM DEFECTIVE 1); microtubule binding (TAIR:AT2G44190.1); Has 155 Blast hits to 153 proteins in 30 species: Archae - 0; Bacteria - 2; Metazoa - 27; Fungi - 7; Plants - 110; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G60000.2p  transcript_id AT3G60000.2  protein_id AT3G60000.2p  transcript_id AT3G60000.2  
At3g60000	chr3:022160930	0.0	W/22160930-22161781,22161871-22161990,22162081-22162197,22162282-22162371,22162465-22162595,22162700-22162718	AT3G60000.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF566 (InterPro:IPR007573); BEST Arabidopsis thaliana protein match is: EDE1 (ENDOSPERM DEFECTIVE 1); microtubule binding (TAIR:AT2G44190.1); Has 157 Blast hits to 155 proteins in 32 species: Archae - 0; Bacteria - 2; Metazoa - 27; Fungi - 9; Plants - 110; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G60000.1p  transcript_id AT3G60000.1  protein_id AT3G60000.1p  transcript_id AT3G60000.1  
At3g60010	chr3:022163094	0.0	C/22163094-22163558	AT3G60010.1  CDS  gene_syn ARABIDOPSIS SKP1-LIKE 13, ASK13, T2O9.1  gene ASK13  go_component endomembrane system|GO:0012505||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|14749489|IPI  product ASK13 (ARABIDOPSIS SKP1-LIKE 13); protein binding / ubiquitin-protein ligase  note ARABIDOPSIS SKP1-LIKE 13 (ASK13); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, seedling growth, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: ASK11 (ARABIDOPSIS SKP1-LIKE 11); protein binding / ubiquitin-protein ligase (TAIR:AT4G34210.1); Has 1076 Blast hits to 1074 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 465; Fungi - 109; Plants - 362; Viruses - 11; Other Eukaryotes - 129 (source: NCBI BLink).  protein_id AT3G60010.1p  transcript_id AT3G60010.1  protein_id AT3G60010.1p  transcript_id AT3G60010.1  
At3g60020	chr3:022164844	0.0	C/22164844-22165305	AT3G60020.1  CDS  gene_syn ARABIDOPSIS SKP1-LIKE 5, ASK5, T2O9.2  gene ASK5  go_component nucleus|GO:0005634|14617066|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function protein binding|GO:0005515||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product ASK5 (ARABIDOPSIS SKP1-LIKE 5); protein binding / ubiquitin-protein ligase  note ARABIDOPSIS SKP1-LIKE 5 (ASK5); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1); protein binding / ubiquitin-protein ligase (TAIR:AT1G75950.1); Has 1076 Blast hits to 1074 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 480; Fungi - 110; Plants - 355; Viruses - 11; Other Eukaryotes - 120 (source: NCBI BLink).  protein_id AT3G60020.1p  transcript_id AT3G60020.1  protein_id AT3G60020.1p  transcript_id AT3G60020.1  
At3g60030	chr3:022168893	0.0	C/22168893-22169410,22168623-22168804,22168022-22168518,22167861-22167935,22167673-22167780,22167466-22167583,22167249-22167384,22167027-22167177,22166374-22166940,22165856-22166287	AT3G60030.1  CDS  gene_syn SPL12, squamosa promoter-binding protein-like 12  gene SPL12  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product SPL12 (squamosa promoter-binding protein-like 12); transcription factor  note squamosa promoter-binding protein-like 12 (SPL12); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: SPL1 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 1); DNA binding / transcription factor (TAIR:AT2G47070.1); Has 614 Blast hits to 578 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 0; Plants - 587; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT3G60030.1p  transcript_id AT3G60030.1  protein_id AT3G60030.1p  transcript_id AT3G60030.1  
At3g60040	chr3:022179335	0.0	C/22179335-22179728,22178892-22179058,22178712-22178787,22177282-22178249,22177058-22177201,22176716-22176964,22176580-22176640,22176348-22176485,22175937-22176256	AT3G60040.1  CDS  go_component plasma membrane|GO:0005886|17151019|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function nucleic acid binding|GO:0003676||IEA  product F-box family protein  note F-box family protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, cultured cell; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Pentatricopeptide repeat (InterPro:IPR002885), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06630.2); Has 19210 Blast hits to 5315 proteins in 139 species: Archae - 5; Bacteria - 22; Metazoa - 100; Fungi - 99; Plants - 18518; Viruses - 0; Other Eukaryotes - 466 (source: NCBI BLink).  protein_id AT3G60040.1p  transcript_id AT3G60040.1  protein_id AT3G60040.1p  transcript_id AT3G60040.1  
At3g60050	chr3:022180231	0.0	C/22180231-22181652	AT3G60050.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G55630.1); Has 19210 Blast hits to 5725 proteins in 176 species: Archae - 3; Bacteria - 18; Metazoa - 367; Fungi - 380; Plants - 17671; Viruses - 0; Other Eukaryotes - 771 (source: NCBI BLink).  protein_id AT3G60050.1p  transcript_id AT3G60050.1  protein_id AT3G60050.1p  transcript_id AT3G60050.1  
At3g60060	chr3:022182291	0.0	W/22182291-22182366,22182508-22182590,22182692-22182822,22182904-22183078	AT3G60060.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Male sterility, NAD-binding (InterPro:IPR013120); Has 87 Blast hits to 83 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 11; Fungi - 4; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G60060.1p  transcript_id AT3G60060.1  protein_id AT3G60060.1p  transcript_id AT3G60060.1  
At3g60070	chr3:022185787	0.0	C/22185787-22185941,22185634-22185703,22185334-22185530,22185163-22185238,22185002-22185085,22184828-22184907,22184620-22184746,22184474-22184533,22184333-22184383,22184082-22184240,22183865-22183997,22183572-22183756	AT3G60070.1  CDS  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G44280.2); Has 789 Blast hits to 778 proteins in 245 species: Archae - 0; Bacteria - 556; Metazoa - 92; Fungi - 2; Plants - 37; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).  protein_id AT3G60070.1p  transcript_id AT3G60070.1  protein_id AT3G60070.1p  transcript_id AT3G60070.1  
At3g60075	chr3:022186835	0.0	C/22186835-22186916	AT3G60075.1  tRNA  gene_syn 67312.TRNA-SER-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: GCT)  transcript_id AT3G60075.1  
At3g60080	chr3:022187635	0.0	W/22187635-22188555	AT3G60080.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G44330.1); Has 6748 Blast hits to 6680 proteins in 214 species: Archae - 0; Bacteria - 92; Metazoa - 2365; Fungi - 617; Plants - 2650; Viruses - 6; Other Eukaryotes - 1018 (source: NCBI BLink).  protein_id AT3G60080.1p  transcript_id AT3G60080.1  protein_id AT3G60080.1p  transcript_id AT3G60080.1  
At3g60090	chr3:022190858	0.0	W/22190858-22191331	AT3G60090.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product VQ motif-containing protein  note VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT2G44340.1); Has 34 Blast hits to 34 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G60090.1p  transcript_id AT3G60090.1  protein_id AT3G60090.1p  transcript_id AT3G60090.1  
At3g60100	chr3:022192888	0.0	W/22192888-22192938,22193022-22193075,22193192-22193233,22193364-22193429,22193520-22193585,22193675-22193788,22193881-22193944,22194096-22194163,22194260-22194312,22194396-22194473,22194588-22194716,22194882-22194924,22195023-22195109,22195242-22195343,22195525-22195632,22195708-22195758,22195843-22195916,22196000-22196051,22196154-22196246	AT3G60100.1  CDS  gene_syn CSY5, citrate synthase 5  gene CSY5  go_process cellular carbohydrate metabolic process|GO:0044262||IEA  go_function citrate (SI)-synthase activity|GO:0004108||IEA  go_function transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer|GO:0046912||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process tricarboxylic acid cycle|GO:0006099||ISS  go_function citrate (SI)-synthase activity|GO:0004108||ISS  product CSY5 (citrate synthase 5); citrate (SI)-synthase/ transferase, transferring acyl groups, acyl groups converted into alkyl on transfer  note citrate synthase 5 (CSY5); FUNCTIONS IN: citrate (SI)-synthase activity, transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer; INVOLVED IN: cellular carbohydrate metabolic process, tricarboxylic acid cycle; LOCATED IN: mitochondrion; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Citrate synthase-like, large alpha subdomain (InterPro:IPR016142), Citrate synthase, eukaryotic (InterPro:IPR010109), Citrate synthase-like, core (InterPro:IPR016141), Citrate synthase-like (InterPro:IPR002020); BEST Arabidopsis thaliana protein match is: ATCS; ATP binding / ATP citrate synthase/ citrate (SI)-synthase (TAIR:AT2G44350.1); Has 7040 Blast hits to 7036 proteins in 1653 species: Archae - 104; Bacteria - 3842; Metazoa - 240; Fungi - 208; Plants - 100; Viruses - 0; Other Eukaryotes - 2546 (source: NCBI BLink).  protein_id AT3G60100.1p  transcript_id AT3G60100.1  protein_id AT3G60100.1p  transcript_id AT3G60100.1  
At3g60110	chr3:022197993	0.0	W/22197993-22198456,22198552-22199065,22200212-22201159	AT3G60110.1  CDS  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT2G44430.1); Has 34218 Blast hits to 19494 proteins in 1019 species: Archae - 47; Bacteria - 2777; Metazoa - 14763; Fungi - 2643; Plants - 1109; Viruses - 170; Other Eukaryotes - 12709 (source: NCBI BLink).  protein_id AT3G60110.1p  transcript_id AT3G60110.1  protein_id AT3G60110.1p  transcript_id AT3G60110.1  
At3g60120	chr3:022206238	0.0	W/22206238-22206245,22206337-22206497,22206675-22206806,22206931-22207008,22207096-22207183,22207281-22207536,22207632-22207747,22207859-22208076,22208183-22208320,22208412-22208520,22208634-22208952	AT3G60120.1  CDS  gene_syn BETA GLUCOSIDASE 27, BGLU27  gene BGLU27  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU27 (BETA GLUCOSIDASE 27); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 27 (BGLU27); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, sepal, hypocotyl, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: PEN2 (PENETRATION 2); hydrolase, hydrolyzing O-glycosyl compounds / thioglucosidase (TAIR:AT2G44490.1); Has 5775 Blast hits to 5533 proteins in 798 species: Archae - 98; Bacteria - 3145; Metazoa - 607; Fungi - 133; Plants - 852; Viruses - 0; Other Eukaryotes - 940 (source: NCBI BLink).  protein_id AT3G60120.1p  transcript_id AT3G60120.1  protein_id AT3G60120.1p  transcript_id AT3G60120.1  
At3g60130	chr3:022210343	0.0	W/22210343-22210489,22210558-22210627,22210837-22210895,22210988-22211063,22211153-22211230,22211360-22211447,22211529-22211784,22212247-22212580,22212673-22212704,22212963-22213065,22213171-22213267,22213446-22213650	AT3G60130.1  CDS  gene_syn BETA GLUCOSIDASE 16, BGLU16  gene BGLU16  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU16 (BETA GLUCOSIDASE 16); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 16 (BGLU16); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU13 (BETA GLUCOSIDASE 13); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT5G44640.1); Has 5827 Blast hits to 5556 proteins in 798 species: Archae - 102; Bacteria - 3170; Metazoa - 608; Fungi - 134; Plants - 852; Viruses - 0; Other Eukaryotes - 961 (source: NCBI BLink).  protein_id AT3G60130.1p  transcript_id AT3G60130.1  protein_id AT3G60130.1p  transcript_id AT3G60130.1  
At3g60130	chr3:022210440	0.0	W/22210440-22210489,22210558-22210627,22210988-22211063,22211153-22211230,22211360-22211447,22211529-22211784,22212247-22212580,22212673-22212704,22212963-22213065,22213171-22213267,22213446-22213650	AT3G60130.2  CDS  gene_syn BETA GLUCOSIDASE 16, BGLU16  gene BGLU16  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU16 (BETA GLUCOSIDASE 16); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 16 (BGLU16); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU13 (BETA GLUCOSIDASE 13); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT5G44640.1); Has 5728 Blast hits to 5466 proteins in 797 species: Archae - 102; Bacteria - 3160; Metazoa - 606; Fungi - 131; Plants - 820; Viruses - 0; Other Eukaryotes - 909 (source: NCBI BLink).  protein_id AT3G60130.2p  transcript_id AT3G60130.2  protein_id AT3G60130.2p  transcript_id AT3G60130.2  
At3g60130	chr3:022210440	0.0	W/22210440-22210489,22210558-22210627,22210988-22211063,22211153-22211230,22211360-22211447,22211529-22211784,22212247-22212580,22212673-22212704,22212996-22213065,22213171-22213267,22213446-22213650	AT3G60130.3  CDS  gene_syn BETA GLUCOSIDASE 16, BGLU16  gene BGLU16  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU16 (BETA GLUCOSIDASE 16); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 16 (BGLU16); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU13 (BETA GLUCOSIDASE 13); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT5G44640.1); Has 5712 Blast hits to 5464 proteins in 797 species: Archae - 102; Bacteria - 3155; Metazoa - 602; Fungi - 131; Plants - 819; Viruses - 0; Other Eukaryotes - 903 (source: NCBI BLink).  protein_id AT3G60130.3p  transcript_id AT3G60130.3  protein_id AT3G60130.3p  transcript_id AT3G60130.3  
At3g60140	chr3:022216753	0.0	W/22216753-22216887,22217694-22217763,22217882-22217937,22218268-22218343,22218444-22218521,22218624-22218711,22218818-22219192,22219279-22219496,22219600-22219634,22219729-22219831,22220106-22220214,22220320-22220710	AT3G60140.1  CDS  gene_syn BETA GLUCOSIDASE 30, BGLU30, DARK INDUCIBLE 2, DIN2, SENESCENCE-RELATED GENE 2, SRG2  gene DIN2  function Encodes a protein similar to beta-glucosidase and is a member of glycoside hydrolase family 1. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene s expression pattern is responding to the level of sugar in the cell.  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_process aging|GO:0007568|11240919|IEP  go_process response to light stimulus|GO:0009416|11240919|IEP  go_process response to sucrose stimulus|GO:0009744|11240919|IEP  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product DIN2 (DARK INDUCIBLE 2); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note DARK INDUCIBLE 2 (DIN2); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: response to light stimulus, aging, response to sucrose stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU28 (BETA GLUCOSIDASE 28); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT2G44460.1); Has 5802 Blast hits to 5550 proteins in 799 species: Archae - 98; Bacteria - 3157; Metazoa - 606; Fungi - 131; Plants - 854; Viruses - 0; Other Eukaryotes - 956 (source: NCBI BLink).  protein_id AT3G60140.1p  transcript_id AT3G60140.1  protein_id AT3G60140.1p  transcript_id AT3G60140.1  
At3g60150	chr3:022222152	0.0	W/22222152-22222324,22222423-22222539,22222829-22222863,22223077-22223177,22223264-22223350	AT3G60150.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF498 (InterPro:IPR007523); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G44525.1); Has 569 Blast hits to 569 proteins in 248 species: Archae - 0; Bacteria - 291; Metazoa - 107; Fungi - 60; Plants - 38; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT3G60150.1p  transcript_id AT3G60150.1  protein_id AT3G60150.1p  transcript_id AT3G60150.1  
At3g60160	chr3:022229171	0.0	C/22229171-22229195,22226732-22229091,22226554-22226640,22225830-22226465,22225619-22225735,22225194-22225488,22224897-22225111,22224511-22224816,22224363-22224426,22224034-22224273,22223829-22223956	AT3G60160.1  CDS  gene_syn ATMRP9  gene ATMRP9  function member of MRP subfamily  go_component integral to membrane|GO:0016021||IEA  go_process response to nematode|GO:0009624|16478044|IEP  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|11346655|ISS  product ATMRP9; ATPase, coupled to transmembrane movement of substances  note ATMRP9; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: response to nematode; LOCATED IN: integral to membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATMRP15; ATPase, coupled to transmembrane movement of substances (TAIR:AT3G60970.1); Has 397922 Blast hits to 210999 proteins in 2576 species: Archae - 7521; Bacteria - 282464; Metazoa - 10708; Fungi - 5102; Plants - 3215; Viruses - 18; Other Eukaryotes - 88894 (source: NCBI BLink).  protein_id AT3G60160.1p  transcript_id AT3G60160.1  protein_id AT3G60160.1p  transcript_id AT3G60160.1  
At3g60164	chr3:022232023	0.0	C/22232023-22237075	AT3G60164.1  pseudogenic_transcript  pseudo  function Pseudogene of AT3G60966; protein binding / zinc ion binding  
At3g60170	chr3:022232512	0.0	W/22232512-22236531	AT3G60170.1  mRNA_TE_gene  pseudo  gene_syn F27H5.6  note Transposable element gene, copia-like retrotransposon family, has a 7.6e-229 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At3g60176	chr3:022240155	0.0	C/22240155-22241164	AT3G60176.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G60176.1  
At3g60180	chr3:022243986	0.0	C/22243986-22244015,22243837-22243888,22243639-22243756,22243335-22243491,22243125-22243205,22242938-22243045,22242781-22242849	AT3G60180.1  CDS  gene_syn F27H5.2  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_process anaerobic respiration|GO:0009061||IEA  go_process pyrimidine ribonucleotide metabolic process|GO:0009218||IEA  go_function ATP binding|GO:0005524||IEA  go_function phosphotransferase activity, phosphate group as acceptor|GO:0016776||IEA  go_function nucleotide kinase activity|GO:0019201||IEA  go_function nucleobase, nucleoside, nucleotide kinase activity|GO:0019205||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_function uridylate kinase activity|GO:0009041||ISS  product uridylate kinase, putative / uridine monophosphate kinase, putative / UMP kinase, putative  note uridylate kinase, putative / uridine monophosphate kinase, putative / UMP kinase, putative; FUNCTIONS IN: nucleobase, nucleoside, nucleotide kinase activity, uridylate kinase activity, nucleotide kinase activity, ATP binding, phosphotransferase activity, phosphate group as acceptor; INVOLVED IN: pyrimidine ribonucleotide metabolic process, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UMP-CMP kinase (InterPro:IPR006266), Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: PYR6; cytidylate kinase/ uridylate kinase (TAIR:AT5G26667.3); Has 8541 Blast hits to 8413 proteins in 1842 species: Archae - 61; Bacteria - 4370; Metazoa - 994; Fungi - 303; Plants - 243; Viruses - 0; Other Eukaryotes - 2570 (source: NCBI BLink).  protein_id AT3G60180.1p  transcript_id AT3G60180.1  protein_id AT3G60180.1p  transcript_id AT3G60180.1  
At3g60180	chr3:022243986	0.0	C/22243986-22244015,22243837-22243888,22243639-22243756,22243335-22243491,22243125-22243205,22242938-22243045,22242781-22242849	AT3G60180.2  CDS  gene_syn F27H5.2  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_function ATP binding|GO:0005524||IEA  go_function phosphotransferase activity, phosphate group as acceptor|GO:0016776||IEA  go_function nucleotide kinase activity|GO:0019201||IEA  go_function nucleobase, nucleoside, nucleotide kinase activity|GO:0019205||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_function uridylate kinase activity|GO:0009041||ISS  product uridylate kinase, putative / uridine monophosphate kinase, putative / UMP kinase, putative  note uridylate kinase, putative / uridine monophosphate kinase, putative / UMP kinase, putative; FUNCTIONS IN: nucleobase, nucleoside, nucleotide kinase activity, uridylate kinase activity, nucleotide kinase activity, ATP binding, phosphotransferase activity, phosphate group as acceptor; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UMP-CMP kinase (InterPro:IPR006266), Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: PYR6; cytidylate kinase/ uridylate kinase (TAIR:AT5G26667.3); Has 8541 Blast hits to 8413 proteins in 1842 species: Archae - 61; Bacteria - 4370; Metazoa - 994; Fungi - 303; Plants - 243; Viruses - 0; Other Eukaryotes - 2570 (source: NCBI BLink).  protein_id AT3G60180.2p  transcript_id AT3G60180.2  protein_id AT3G60180.2p  transcript_id AT3G60180.2  
At3g60190	chr3:022247505	0.0	C/22247505-22247651,22247352-22247415,22247157-22247264,22246931-22247032,22246795-22246845,22246642-22246703,22246413-22246503,22246256-22246320,22245871-22246065,22245659-22245778,22245499-22245569,22245192-22245417,22245064-22245114,22244585-22244977,22244367-22244495	AT3G60190.1  CDS  gene_syn ADL1E, ADL4, ADLP2, ARABIDOPSIS DYNAMIN-LIKE 1E, ARABIDOPSIS DYNAMIN-LIKE 4, DRP1E, DYNAMIN-LIKE PROTEIN 2, DYNAMIN-RELATED PROTEIN 1E, EDR3, ENHANCED DISEASE RESISTANCE 3, F27H5.4  gene ADL1E  function At3g60190 encodes Arabidopsis dynamin-related protein 1E, DRP1E, also known as EDR3, ADL4 and ADL1E, which is 624 amino acid residues long, has a predicted mass of 69.8 kDa and a pI of 7.5. Dynamin-related protein 1E belongs to a plant-specific subclass of dynamin-related proteins (DRP1), consisting of five members in Arabidopsis (A, B, C, D, E). This class is characterized by having an N-terminal GTPase domain, a central  dynamin 2  domain and a C-terminal GTPase effector domain (GED), a typical structure for plant dynamin-related proteins. However, this class lacks a PH domain and a proline-rich domain, which are found in classical animal dynamin-like proteins. Based on work on animal dynamins, the plant DRP1 proteins should be able to form polymeric structures that wrap around membranes to facilitate membrane tubulation and pinching off of vesicles, processes that are essential to vesicle trafficking and membrane compartmentalization. The edr3 mutation causes a P77L substitution in the G2 motif of the GTPase domain of DRP1E. edr3 mutant Arabidopsis plants display enhanced cell death in response to powdery mildew infection.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_component mitochondrion|GO:0005739|16824181|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_process vesicle-mediated transport|GO:0016192|11351070|ISS  go_process defense response to fungus|GO:0050832|16824181|IMP  go_function GTPase activity|GO:0003924||ISS  go_function GTP binding|GO:0005525||ISS  product ADL1E (ARABIDOPSIS DYNAMIN-LIKE 1E); GTP binding / GTPase  note ARABIDOPSIS DYNAMIN-LIKE 1E (ADL1E); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: response to cadmium ion, defense response to fungus, vesicle-mediated transport; LOCATED IN: mitochondrion, plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130), Dynamin, GTPase region (InterPro:IPR001401), Dynamin central region (InterPro:IPR000375); BEST Arabidopsis thaliana protein match is: ADL1D (ARABIDOPSIS DYNAMIN-RELATED PROTEIN 1D); GTP binding / GTPase (TAIR:AT2G44590.3); Has 2152 Blast hits to 2046 proteins in 248 species: Archae - 2; Bacteria - 35; Metazoa - 943; Fungi - 554; Plants - 324; Viruses - 0; Other Eukaryotes - 294 (source: NCBI BLink).  protein_id AT3G60190.1p  transcript_id AT3G60190.1  protein_id AT3G60190.1p  transcript_id AT3G60190.1  
At3g60200	chr3:022249320	0.0	W/22249320-22250237	AT3G60200.1  CDS  gene_syn F27H5.7  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G44600.1); Has 37 Blast hits to 37 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G60200.1p  transcript_id AT3G60200.1  protein_id AT3G60200.1p  transcript_id AT3G60200.1  
At3g60210	chr3:022252619	0.0	C/22252619-22252709,22252459-22252517,22252301-22252351,22251864-22251929,22251729-22251776,22251609-22251638,22251443-22251514	AT3G60210.1  CDS  gene_syn F27H5.5  go_component chloroplast|GO:0009507||IEA  go_process protein folding|GO:0006457||IEA  go_function ATP binding|GO:0005524||IEA  product chloroplast chaperonin 10, putative  note chloroplast chaperonin 10, putative; FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Chaperonin Cpn10 (InterPro:IPR001476); BEST Arabidopsis thaliana protein match is: CHL-CPN10 (CHLOROPLAST CHAPERONIN 10); chaperone binding (TAIR:AT2G44650.1); Has 2417 Blast hits to 2414 proteins in 510 species: Archae - 4; Bacteria - 1147; Metazoa - 9; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 1152 (source: NCBI BLink).  protein_id AT3G60210.1p  transcript_id AT3G60210.1  protein_id AT3G60210.1p  transcript_id AT3G60210.1  
At3g60220	chr3:022254790	0.0	C/22254790-22255794	AT3G60220.1  CDS  gene_syn ATL4  gene ATL4  function Encodes a putative RING-H2 zinc finger protein ATL4 (ATL4).  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product ATL4; protein binding / zinc ion binding  note ATL4; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G30400.1); Has 6005 Blast hits to 5989 proteins in 226 species: Archae - 0; Bacteria - 8; Metazoa - 2016; Fungi - 461; Plants - 2573; Viruses - 50; Other Eukaryotes - 897 (source: NCBI BLink).  protein_id AT3G60220.1p  transcript_id AT3G60220.1  protein_id AT3G60220.1p  transcript_id AT3G60220.1  
At3g60238	chr3:022259085	0.0	C/22259085-22259844	AT3G60238.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G60238.1  
At3g60240	chr3:022261842	0.0	W/22261842-22262038,22262144-22262256,22262372-22262512,22262632-22262699,22262777-22262833,22263112-22264449,22264541-22267284,22267684-22267878,22267965-22268295	AT3G60240.4  CDS  gene_syn CUCUMOVIRUS MULTIPLICATION 2, CUM2, EIF4G, EUKARYOTIC TRANSLATION INITIATION FACTOR 4G  gene EIF4G  function protein synthesis initiation factor 4G (EIF4G). A mutation in this gene (cum2-1) results in decreased accumulation of CMV coat protein in upper, uninoculated leaves. Likely affects cell-to-cell movement of the virus, also affects TCV multiplication.  go_process response to virus|GO:0009615|9765416|IMP  go_function translation initiation factor activity|GO:0003743||ISS  product EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G); translation initiation factor  note EUKARYOTIC TRANSLATION INITIATION FACTOR 4G (EIF4G); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: response to virus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891), MIF4G-like, type 3 (InterPro:IPR003890), Armadillo-type fold (InterPro:IPR016024), MIF4-like, type 1/2/3 (InterPro:IPR016021); BEST Arabidopsis thaliana protein match is: MIF4G domain-containing protein / MA3 domain-containing protein (TAIR:AT2G24050.1); Has 7848 Blast hits to 5658 proteins in 392 species: Archae - 14; Bacteria - 711; Metazoa - 3814; Fungi - 1495; Plants - 408; Viruses - 78; Other Eukaryotes - 1328 (source: NCBI BLink).  protein_id AT3G60240.4p  transcript_id AT3G60240.4  protein_id AT3G60240.4p  transcript_id AT3G60240.4  
At3g60240	chr3:022261842	0.0	W/22261842-22262038,22262144-22262256,22262378-22262512,22262632-22262699,22262777-22262833,22263112-22264449,22264541-22267284,22267684-22267878,22267965-22268295	AT3G60240.3  CDS  gene_syn CUCUMOVIRUS MULTIPLICATION 2, CUM2, EIF4G, EUKARYOTIC TRANSLATION INITIATION FACTOR 4G  gene EIF4G  function protein synthesis initiation factor 4G (EIF4G). A mutation in this gene (cum2-1) results in decreased accumulation of CMV coat protein in upper, uninoculated leaves. Likely affects cell-to-cell movement of the virus, also affects TCV multiplication.  go_process response to virus|GO:0009615|9765416|IMP  go_function translation initiation factor activity|GO:0003743||ISS  product EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G); translation initiation factor  note EUKARYOTIC TRANSLATION INITIATION FACTOR 4G (EIF4G); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: response to virus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891), Armadillo-type fold (InterPro:IPR016024), MIF4G-like, type 3 (InterPro:IPR003890), MIF4-like, type 1/2/3 (InterPro:IPR016021); BEST Arabidopsis thaliana protein match is: MIF4G domain-containing protein / MA3 domain-containing protein (TAIR:AT2G24050.1); Has 7812 Blast hits to 5573 proteins in 393 species: Archae - 14; Bacteria - 745; Metazoa - 3799; Fungi - 1452; Plants - 421; Viruses - 72; Other Eukaryotes - 1309 (source: NCBI BLink).  protein_id AT3G60240.3p  transcript_id AT3G60240.3  protein_id AT3G60240.3p  transcript_id AT3G60240.3  
At3g60240	chr3:022261842	0.0	W/22261842-22262038,22262144-22262256,22262378-22262512,22262638-22262699,22262777-22262833,22263112-22264449,22264541-22267284,22267684-22267878,22267965-22268295	AT3G60240.2  CDS  gene_syn CUCUMOVIRUS MULTIPLICATION 2, CUM2, EIF4G, EUKARYOTIC TRANSLATION INITIATION FACTOR 4G  gene EIF4G  function protein synthesis initiation factor 4G (EIF4G). A mutation in this gene (cum2-1) results in decreased accumulation of CMV coat protein in upper, uninoculated leaves. Likely affects cell-to-cell movement of the virus, also affects TCV multiplication.  go_process response to virus|GO:0009615|9765416|IMP  go_function translation initiation factor activity|GO:0003743||ISS  product EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G); translation initiation factor  note EUKARYOTIC TRANSLATION INITIATION FACTOR 4G (EIF4G); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: response to virus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891), Armadillo-type fold (InterPro:IPR016024), MIF4G-like, type 3 (InterPro:IPR003890), MIF4-like, type 1/2/3 (InterPro:IPR016021); BEST Arabidopsis thaliana protein match is: MIF4G domain-containing protein / MA3 domain-containing protein (TAIR:AT2G24050.1); Has 8014 Blast hits to 5756 proteins in 404 species: Archae - 14; Bacteria - 740; Metazoa - 3942; Fungi - 1554; Plants - 423; Viruses - 76; Other Eukaryotes - 1265 (source: NCBI BLink).  protein_id AT3G60240.2p  transcript_id AT3G60240.2  protein_id AT3G60240.2p  transcript_id AT3G60240.2  
At3g60245	chr3:022268803	0.0	W/22268803-22268805,22269009-22269048,22269321-22269409,22269508-22269590,22269687-22269750	AT3G60245.1  CDS  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L37a (RPL37aC)  note 60S ribosomal protein L37a (RPL37aC); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, ribosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein, zinc-binding (InterPro:IPR011332), Ribosomal protein L37ae (InterPro:IPR002674), Ribosomal protein L37ae/L37e, core (InterPro:IPR011331); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L37a (RPL37aB) (TAIR:AT3G10950.1); Has 762 Blast hits to 762 proteins in 273 species: Archae - 200; Bacteria - 0; Metazoa - 221; Fungi - 91; Plants - 82; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).  protein_id AT3G60245.1p  transcript_id AT3G60245.1  protein_id AT3G60245.1p  transcript_id AT3G60245.1  
At3g60250	chr3:022271758	0.0	C/22271758-22271962,22271453-22271671,22271255-22271364,22270993-22271158,22270714-22270844	AT3G60250.1  CDS  gene_syn CASEIN KINASE II BETA CHAIN 3, CKB3  gene CKB3  function Regulatory (beta) subunit of the protein kinase CK2. Involved in regulation of the circadian clock in Arabidopsis  go_component protein kinase CK2 complex|GO:0005956|9724822|IDA  go_component protein kinase CK2 complex|GO:0005956||ISS  go_process circadian rhythm|GO:0007623|10535927|IMP  go_function transcription factor binding|GO:0008134|9724822|IDA  go_function protein kinase regulator activity|GO:0019887|9724822|IDA  product CKB3; protein kinase regulator/ transcription factor binding  note CKB3; FUNCTIONS IN: transcription factor binding, protein kinase regulator activity; INVOLVED IN: circadian rhythm; LOCATED IN: protein kinase CK2 complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Casein kinase II, regulatory subunit, alpha-helical (InterPro:IPR016149), Casein kinase II, regulatory subunit, beta-sheet (InterPro:IPR016150), Casein kinase II, regulatory subunit (InterPro:IPR000704); BEST Arabidopsis thaliana protein match is: CKB4 (CASEIN KINASE II BETA SUBUNIT 4); protein serine/threonine kinase (TAIR:AT2G44680.1); Has 855 Blast hits to 852 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 373; Fungi - 185; Plants - 111; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).  protein_id AT3G60250.1p  transcript_id AT3G60250.1  protein_id AT3G60250.1p  transcript_id AT3G60250.1  
At3g60250	chr3:022271758	0.0	C/22271758-22271962,22271453-22271671,22271255-22271364,22270996-22271158,22270714-22270844	AT3G60250.2  CDS  gene_syn CASEIN KINASE II BETA CHAIN 3, CKB3  gene CKB3  function Regulatory (beta) subunit of the protein kinase CK2. Involved in regulation of the circadian clock in Arabidopsis  go_component protein kinase CK2 complex|GO:0005956|9724822|IDA  go_component protein kinase CK2 complex|GO:0005956||ISS  go_process circadian rhythm|GO:0007623|10535927|IMP  go_function transcription factor binding|GO:0008134|9724822|IDA  go_function protein kinase regulator activity|GO:0019887|9724822|IDA  product CKB3; protein kinase regulator/ transcription factor binding  note CKB3; FUNCTIONS IN: transcription factor binding, protein kinase regulator activity; INVOLVED IN: circadian rhythm; LOCATED IN: protein kinase CK2 complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Casein kinase II, regulatory subunit, alpha-helical (InterPro:IPR016149), Casein kinase II, regulatory subunit, beta-sheet (InterPro:IPR016150), Casein kinase II, regulatory subunit (InterPro:IPR000704); BEST Arabidopsis thaliana protein match is: CKB4 (CASEIN KINASE II BETA SUBUNIT 4); protein serine/threonine kinase (TAIR:AT2G44680.2); Has 860 Blast hits to 857 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 373; Fungi - 185; Plants - 114; Viruses - 0; Other Eukaryotes - 188 (source: NCBI BLink).  protein_id AT3G60250.2p  transcript_id AT3G60250.2  protein_id AT3G60250.2p  transcript_id AT3G60250.2  
At3g60260	chr3:022274303	0.0	W/22274303-22274387,22275069-22275178,22275314-22275382,22275563-22275678,22275752-22275806,22275975-22276095,22276348-22276395,22276487-22276581,22276738-22276839	AT3G60260.1  CDS  go_component cytoskeleton|GO:0005856||IEA  go_process phagocytosis|GO:0006909||IEA  go_function molecular_function|GO:0003674||ND  product phagocytosis and cell motility protein ELMO1-related  note phagocytosis and cell motility protein ELMO1-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: phagocytosis; LOCATED IN: cytoskeleton; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Engulfment and cell motility, ELMO (InterPro:IPR006816); BEST Arabidopsis thaliana protein match is: phagocytosis and cell motility protein ELMO1-related (TAIR:AT2G44770.1); Has 652 Blast hits to 652 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 437; Fungi - 25; Plants - 111; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT3G60260.1p  transcript_id AT3G60260.1  protein_id AT3G60260.1p  transcript_id AT3G60260.1  
At3g60260	chr3:022274303	0.0	W/22274303-22274387,22275069-22275178,22275314-22275382,22275563-22275678,22275752-22275806,22275975-22276095,22276348-22276395,22276487-22276581,22276738-22276839	AT3G60260.2  CDS  go_component cytoskeleton|GO:0005856||IEA  go_process phagocytosis|GO:0006909||IEA  go_function molecular_function|GO:0003674||ND  product phagocytosis and cell motility protein ELMO1-related  note phagocytosis and cell motility protein ELMO1-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: phagocytosis; LOCATED IN: cytoskeleton; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Engulfment and cell motility, ELMO (InterPro:IPR006816); BEST Arabidopsis thaliana protein match is: phagocytosis and cell motility protein ELMO1-related (TAIR:AT2G44770.1); Has 652 Blast hits to 652 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 437; Fungi - 25; Plants - 111; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT3G60260.2p  transcript_id AT3G60260.2  protein_id AT3G60260.2p  transcript_id AT3G60260.2  
At3g60260	chr3:022274303	0.0	W/22274303-22274387,22275069-22275178,22275314-22275382,22275563-22275678,22275752-22275806,22275975-22276095,22276348-22276395,22276487-22276581,22276738-22276839	AT3G60260.4  CDS  go_component cytoskeleton|GO:0005856||IEA  go_process phagocytosis|GO:0006909||IEA  go_function molecular_function|GO:0003674||ND  product phagocytosis and cell motility protein ELMO1-related  note phagocytosis and cell motility protein ELMO1-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: phagocytosis; LOCATED IN: cytoskeleton; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Engulfment and cell motility, ELMO (InterPro:IPR006816); BEST Arabidopsis thaliana protein match is: phagocytosis and cell motility protein ELMO1-related (TAIR:AT2G44770.1); Has 652 Blast hits to 652 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 437; Fungi - 25; Plants - 111; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT3G60260.4p  transcript_id AT3G60260.4  protein_id AT3G60260.4p  transcript_id AT3G60260.4  
At3g60260	chr3:022274645	0.0	W/22274645-22274663,22275069-22275178,22275314-22275382,22275563-22275678,22275752-22275806,22275975-22276095,22276348-22276395,22276487-22276581,22276738-22276839	AT3G60260.3  CDS  go_component cytoskeleton|GO:0005856||IEA  go_process phagocytosis|GO:0006909||IEA  go_function molecular_function|GO:0003674||ND  product phagocytosis and cell motility protein ELMO1-related  note phagocytosis and cell motility protein ELMO1-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: phagocytosis; LOCATED IN: cytoskeleton; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Engulfment and cell motility, ELMO (InterPro:IPR006816); BEST Arabidopsis thaliana protein match is: phagocytosis and cell motility protein ELMO1-related (TAIR:AT2G44770.1); Has 652 Blast hits to 652 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 437; Fungi - 25; Plants - 111; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT3G60260.3p  transcript_id AT3G60260.3  protein_id AT3G60260.3p  transcript_id AT3G60260.3  
At3g60270	chr3:022278597	0.0	C/22278597-22278762,22278029-22278426	AT3G60270.1  CDS  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function copper ion binding|GO:0005507||ISS  product uclacyanin, putative  note uclacyanin, putative; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to membrane; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: UCC3 (UCLACYANIN 3); copper ion binding / electron carrier (TAIR:AT3G60280.1); Has 1541 Blast hits to 1163 proteins in 113 species: Archae - 3; Bacteria - 122; Metazoa - 13; Fungi - 56; Plants - 1018; Viruses - 72; Other Eukaryotes - 257 (source: NCBI BLink).  protein_id AT3G60270.1p  transcript_id AT3G60270.1  protein_id AT3G60270.1p  transcript_id AT3G60270.1  
At3g60280	chr3:022280474	0.0	C/22280474-22280633,22279867-22280375	AT3G60280.1  CDS  gene_syn UCC3, UCLACYANIN 3  gene UCC3  function Encodes blue copper-binding protein III.  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function copper ion binding|GO:0005507||ISS  product UCC3 (UCLACYANIN 3); copper ion binding / electron carrier  note UCLACYANIN 3 (UCC3); FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to membrane; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: uclacyanin, putative (TAIR:AT3G60270.1); Has 65315 Blast hits to 25586 proteins in 1263 species: Archae - 175; Bacteria - 10804; Metazoa - 20339; Fungi - 7222; Plants - 11123; Viruses - 2687; Other Eukaryotes - 12965 (source: NCBI BLink).  protein_id AT3G60280.1p  transcript_id AT3G60280.1  protein_id AT3G60280.1p  transcript_id AT3G60280.1  
At3g60286	chr3:022281916	0.0	C/22281916-22282017	AT3G60286.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G60286.1p  transcript_id AT3G60286.1  protein_id AT3G60286.1p  transcript_id AT3G60286.1  
At3g60290	chr3:022282662	0.0	W/22282662-22282913,22283416-22283663,22283841-22284414	AT3G60290.1  CDS  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biosynthetic process|GO:0009058||ISS  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors  note oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT2G44800.1); Has 5797 Blast hits to 5766 proteins in 669 species: Archae - 0; Bacteria - 679; Metazoa - 115; Fungi - 643; Plants - 3059; Viruses - 0; Other Eukaryotes - 1301 (source: NCBI BLink).  protein_id AT3G60290.1p  transcript_id AT3G60290.1  protein_id AT3G60290.1p  transcript_id AT3G60290.1  
At3g60300	chr3:022285371	0.0	W/22285371-22285508,22285795-22285833,22285918-22286055,22286343-22286482,22286586-22286689,22286759-22286874,22286957-22287382	AT3G60300.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product RWD domain-containing protein  note RWD domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Zinc finger, RING-type (InterPro:IPR001841), RWD (InterPro:IPR006575); Has 252 Blast hits to 252 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 198; Fungi - 9; Plants - 28; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT3G60300.1p  transcript_id AT3G60300.1  protein_id AT3G60300.1p  transcript_id AT3G60300.1  
At3g60310	chr3:022287781	0.0	W/22287781-22288008,22288093-22288279,22288370-22288544,22288684-22288887,22289011-22289313,22289413-22290379	AT3G60310.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 13 Blast hits to 9 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G60310.1p  transcript_id AT3G60310.1  protein_id AT3G60310.1p  transcript_id AT3G60310.1  
At3g60318	chr3:022291597	0.0	W/22291597-22291737	AT3G60318.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G60318.1p  transcript_id AT3G60318.1  protein_id AT3G60318.1p  transcript_id AT3G60318.1  
At3g60320	chr3:022294037	0.0	C/22294037-22295228,22293754-22293938,22293443-22293666,22292073-22292862	AT3G60320.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT1G02110.1); Has 6404 Blast hits to 2781 proteins in 248 species: Archae - 2; Bacteria - 111; Metazoa - 1760; Fungi - 418; Plants - 766; Viruses - 106; Other Eukaryotes - 3241 (source: NCBI BLink).  protein_id AT3G60320.1p  transcript_id AT3G60320.1  protein_id AT3G60320.1p  transcript_id AT3G60320.1  
At3g60328	chr3:022298367	0.0	C/22298367-22298525	AT3G60328.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G60328.1p  transcript_id AT3G60328.1  protein_id AT3G60328.1p  transcript_id AT3G60328.1  
At3g60330	chr3:022298763	0.0	W/22298763-22298813,22298916-22299035,22299127-22299225,22299364-22299501,22299577-22299715,22299802-22299977,22300066-22300272,22300354-22300473,22300573-22300692,22300788-22300910,22301018-22301122,22301206-22301350,22301453-22301608,22301696-22301934,22302028-22302060,22302135-22302216,22302311-22302471,22302558-22302770,22302870-22303052,22303147-22303322,22303410-22303509	AT3G60330.1  CDS  gene_syn AHA7, Arabidopsis H(+)-ATPase 7, T8B10.1  gene AHA7  go_component plasma membrane|GO:0005886|17317660|IDA  go_process ATP biosynthetic process|GO:0006754||IEA  go_process cation transport|GO:0006812||IEA  go_process metabolic process|GO:0008152||IEA  go_function hydrogen-exporting ATPase activity, phosphorylative mechanism|GO:0008553||ISS  product AHA7 (Arabidopsis H(+)-ATPase 7); hydrogen-exporting ATPase, phosphorylative mechanism  note Arabidopsis H(+)-ATPase 7 (AHA7); FUNCTIONS IN: hydrogen-exporting ATPase activity, phosphorylative mechanism; INVOLVED IN: cation transport, metabolic process, ATP biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type, plasma-membrane proton-efflux (InterPro:IPR006534), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: AHA11 (Arabidopsis H(+)-ATPase 11); ATPase (TAIR:AT5G62670.1); Has 20926 Blast hits to 18877 proteins in 1913 species: Archae - 401; Bacteria - 11449; Metazoa - 3388; Fungi - 1634; Plants - 1084; Viruses - 3; Other Eukaryotes - 2967 (source: NCBI BLink).  protein_id AT3G60330.1p  transcript_id AT3G60330.1  protein_id AT3G60330.1p  transcript_id AT3G60330.1  
At3g60340	chr3:022304395	0.0	W/22304395-22304482,22304675-22304759,22304846-22304897,22304992-22305012,22305099-22305203,22305311-22305373,22305459-22305524,22305608-22305646,22305719-22305838,22305919-22306011,22306105-22306389	AT3G60340.1  CDS  gene_syn T8B10.2  go_component vacuole|GO:0005773|15539469|IDA  go_process protein modification process|GO:0006464||IEA  go_function palmitoyl-(protein) hydrolase activity|GO:0008474||IEA  go_function palmitoyl-(protein) hydrolase activity|GO:0008474||ISS  product palmitoyl protein thioesterase family protein  note palmitoyl protein thioesterase family protein; FUNCTIONS IN: palmitoyl-(protein) hydrolase activity; INVOLVED IN: protein modification process; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Palmitoyl protein thioesterase (InterPro:IPR002472); BEST Arabidopsis thaliana protein match is: palmitoyl protein thioesterase family protein (TAIR:AT5G47330.1); Has 463 Blast hits to 459 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 274; Fungi - 66; Plants - 80; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT3G60340.1p  transcript_id AT3G60340.1  protein_id AT3G60340.1p  transcript_id AT3G60340.1  
At3g60340	chr3:022304395	0.0	W/22304395-22304482,22304675-22304759,22304846-22304897,22304992-22305012,22305099-22305203,22305311-22305373,22305459-22305524,22305608-22305646,22305719-22305838,22305919-22306011,22306105-22306389	AT3G60340.2  CDS  gene_syn T8B10.2  go_component vacuole|GO:0005773|15539469|IDA  go_process protein modification process|GO:0006464||IEA  go_function palmitoyl-(protein) hydrolase activity|GO:0008474||IEA  go_function palmitoyl-(protein) hydrolase activity|GO:0008474||ISS  product palmitoyl protein thioesterase family protein  note palmitoyl protein thioesterase family protein; FUNCTIONS IN: palmitoyl-(protein) hydrolase activity; INVOLVED IN: protein modification process; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Palmitoyl protein thioesterase (InterPro:IPR002472); BEST Arabidopsis thaliana protein match is: palmitoyl protein thioesterase family protein (TAIR:AT5G47330.1); Has 463 Blast hits to 459 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 274; Fungi - 66; Plants - 80; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT3G60340.2p  transcript_id AT3G60340.2  protein_id AT3G60340.2p  transcript_id AT3G60340.2  
At3g60350	chr3:022309085	0.0	C/22309085-22310596,22308912-22308992,22308466-22308597,22308126-22308341,22307938-22308032,22307741-22307804,22307487-22307662,22307094-22307400,22306806-22307009	AT3G60350.1  CDS  function ARABIDILLO-2 and its homolog, ARABIDILLO -1, are unique among Arabidopsis Arm-repeat proteins in having an F-box motif and fall into a phylogenetically distinct subgroup from other plant Arm-repeat proteins Similar to arm repeat protein in rice and armadillo/beta-catenin repeat family protein / F-box family protein in Dictyostelium. ARABIDILLO-2 promote lateral root development. Mutant plants form fewer lateral roots, while ARABIDILLO-2-overexpressing lines produce more lateral roots than wild-type seedlings.  go_function binding|GO:0005488||IEA  go_component nucleus|GO:0005634|16434475|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|ISS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product armadillo/beta-catenin repeat family protein / F-box family protein  note armadillo/beta-catenin repeat family protein / F-box family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein / F-box family protein (TAIR:AT2G44900.1); Has 7224 Blast hits to 3968 proteins in 218 species: Archae - 0; Bacteria - 50; Metazoa - 3869; Fungi - 539; Plants - 2062; Viruses - 0; Other Eukaryotes - 704 (source: NCBI BLink).  protein_id AT3G60350.1p  transcript_id AT3G60350.1  protein_id AT3G60350.1p  transcript_id AT3G60350.1  
At3g60360	chr3:022313947	0.0	C/22313947-22314002,22313771-22313861,22313493-22313584,22313278-22313371,22313105-22313184,22312834-22312914,22312651-22312750,22312477-22312569	AT3G60360.1  CDS  gene_syn EDA14, EMBRYO SAC DEVELOPMENT ARREST 14, U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 11, UTP11  gene EDA14  go_component small-subunit processome|GO:0032040||IEA  go_process megagametogenesis|GO:0009561|15634699|IMP  go_function molecular_function|GO:0003674||ND  product EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14)  note EMBRYO SAC DEVELOPMENT ARREST 14 (EDA14); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: megagametogenesis; LOCATED IN: small-subunit processome; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp11 (InterPro:IPR007144); Has 322 Blast hits to 316 proteins in 149 species: Archae - 1; Bacteria - 1; Metazoa - 110; Fungi - 92; Plants - 33; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT3G60360.1p  transcript_id AT3G60360.1  protein_id AT3G60360.1p  transcript_id AT3G60360.1  
At3g60370	chr3:022316485	0.0	C/22316485-22316533,22316302-22316377,22316034-22316218,22315811-22315920,22315573-22315681,22315382-22315458,22315000-22315122	AT3G60370.1  CDS  function Encodes an immunophilin, FKBP20-2, that belongs to the FK-506 binding protein (FKBP) subfamily functioning as peptidyl-prolyl isomerases (PPIases) in protein folding. FKBP20-2 has a unique pair of cysteines at the C terminus and was found to be reduced by thioredoxin (Trx) (itself reduced by NADPH by means of NADP-Trx reductase). The FKBP20-2 protein, which contains only two of the five amino acids required for catalysis, showed a low level of PPIase activity that was unaffected on reduction by Trx. Genetic disruption of the FKBP20-2 gene provide evidence that FKBP20-2 participates specifically in the accumulation of the PSII supercomplex in the chloroplast thylakoid lumen by means of a mechanism that has yet to be determined.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|ISS  go_process photosystem II assembly|GO:0010207|16894144|IMP  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755|16894144|IDA  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  go_function FK506 binding|GO:0005528||ISS  go_function oxidoreductase activity|GO:0016491|16894144|IDA  product immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein  note immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity, oxidoreductase activity; INVOLVED IN: photosystem II assembly; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT2G43560.1); Has 4869 Blast hits to 4610 proteins in 946 species: Archae - 4; Bacteria - 2285; Metazoa - 1022; Fungi - 291; Plants - 325; Viruses - 0; Other Eukaryotes - 942 (source: NCBI BLink).  protein_id AT3G60370.1p  transcript_id AT3G60370.1  protein_id AT3G60370.1p  transcript_id AT3G60370.1  
At3g60380	chr3:022316913	0.0	C/22316913-22319144	AT3G60380.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT4G16790.1); Has 5716 Blast hits to 3635 proteins in 329 species: Archae - 2; Bacteria - 249; Metazoa - 2628; Fungi - 569; Plants - 209; Viruses - 24; Other Eukaryotes - 2035 (source: NCBI BLink).  protein_id AT3G60380.1p  transcript_id AT3G60380.1  protein_id AT3G60380.1p  transcript_id AT3G60380.1  
At3g60390	chr3:022322172	0.0	C/22322172-22322370,22321655-22322013,22321491-22321570,22320788-22321097	AT3G60390.1  CDS  gene_syn HAT3, HOMEOBOX PROTEIN, HOMEOBOX-LEUCINE ZIPPER PROTEIN 3  gene HAT3  function Encodes homeobox protein HAT3.  go_component nucleus|GO:0005634||IEA  go_process transcription|GO:0006350||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product HAT3 (HOMEOBOX-LEUCINE ZIPPER PROTEIN 3); transcription factor  note HOMEOBOX-LEUCINE ZIPPER PROTEIN 3 (HAT3); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, transcription, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: HD-ZIP protein, N-terminal (InterPro:IPR006712), Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ATHB4 (ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4); DNA binding / transcription factor (TAIR:AT2G44910.1); Has 7809 Blast hits to 7758 proteins in 453 species: Archae - 0; Bacteria - 0; Metazoa - 6021; Fungi - 195; Plants - 1452; Viruses - 4; Other Eukaryotes - 137 (source: NCBI BLink).  protein_id AT3G60390.1p  transcript_id AT3G60390.1  protein_id AT3G60390.1p  transcript_id AT3G60390.1  
At3g60400	chr3:022329093	0.0	W/22329093-22330769	AT3G60400.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial transcription termination factor-related / mTERF-related  note mitochondrial transcription termination factor-related / mTERF-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: mitochondrial transcription termination factor-related / mTERF-related (TAIR:AT5G06810.1); Has 194 Blast hits to 190 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 194; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G60400.1p  transcript_id AT3G60400.1  protein_id AT3G60400.1p  transcript_id AT3G60400.1  
At3g60410	chr3:022331612	0.0	W/22331612-22332517,22332612-22332680	AT3G60410.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25370.1); Has 157 Blast hits to 157 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 2; Plants - 143; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G60410.1p  transcript_id AT3G60410.1  protein_id AT3G60410.1p  transcript_id AT3G60410.1  
At3g60410	chr3:022331612	0.0	W/22331612-22332517,22332612-22332680	AT3G60410.2  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25370.1); Has 157 Blast hits to 157 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 2; Plants - 143; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G60410.2p  transcript_id AT3G60410.2  protein_id AT3G60410.2p  transcript_id AT3G60410.2  
At3g60410	chr3:022331612	0.0	W/22331612-22332517,22332612-22332680	AT3G60410.3  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25370.1); Has 157 Blast hits to 157 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 2; Plants - 143; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G60410.3p  transcript_id AT3G60410.3  protein_id AT3G60410.3p  transcript_id AT3G60410.3  
At3g60420	chr3:022334446	0.0	W/22334446-22334778,22335025-22335183,22335294-22335402,22335499-22335506,22336696-22336854,22336948-22337056,22337155-22337330	AT3G60420.2  CDS  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60450.1); Has 196 Blast hits to 165 proteins in 65 species: Archae - 0; Bacteria - 41; Metazoa - 2; Fungi - 34; Plants - 58; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT3G60420.2p  transcript_id AT3G60420.2  protein_id AT3G60420.2p  transcript_id AT3G60420.2  
At3g60420	chr3:022334446	0.0	W/22334446-22334778,22335025-22335183,22335294-22335402,22335499-22335710	AT3G60420.1  CDS  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078), PRIB5 (InterPro:IPR012398); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60450.1); Has 181 Blast hits to 179 proteins in 72 species: Archae - 0; Bacteria - 53; Metazoa - 4; Fungi - 34; Plants - 34; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT3G60420.1p  transcript_id AT3G60420.1  protein_id AT3G60420.1p  transcript_id AT3G60420.1  
At3g60440	chr3:022337820	0.0	W/22337820-22338224,22338387-22338545,22338659-22338767,22338943-22339145	AT3G60440.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  product unknown protein  note LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078), PRIB5 (InterPro:IPR012398); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60450.1); Has 180 Blast hits to 178 proteins in 74 species: Archae - 0; Bacteria - 37; Metazoa - 8; Fungi - 48; Plants - 35; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT3G60440.1p  transcript_id AT3G60440.1  protein_id AT3G60440.1p  transcript_id AT3G60440.1  
At3g60450	chr3:022340982	0.0	W/22340982-22341317,22341406-22341564,22341655-22341763,22341967-22342187	AT3G60450.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078), PRIB5 (InterPro:IPR012398); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60440.1); Has 187 Blast hits to 185 proteins in 74 species: Archae - 0; Bacteria - 51; Metazoa - 14; Fungi - 36; Plants - 35; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT3G60450.1p  transcript_id AT3G60450.1  protein_id AT3G60450.1p  transcript_id AT3G60450.1  
At3g60460	chr3:022343304	0.0	C/22343304-22343491,22342945-22343206,22342429-22342872	AT3G60460.1  CDS  gene_syn DUO POLLEN 1, DUO1  gene DUO1  function Encodes an R2R3 myb transcription factor that is required for male gamete formation, specifically for entry of the generative cell into mitosis. Specifically expressed in the male germline.  go_component nucleus|GO:0005634|15694308|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process pollen sperm cell differentiation|GO:0048235|15618418|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product DUO1 (DUO POLLEN 1); DNA binding / transcription factor  note DUO POLLEN 1 (DUO1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: pollen sperm cell differentiation, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: generative cell, sperm cell; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB97 (myb domain protein 97); DNA binding / transcription factor (TAIR:AT4G26930.1); Has 6008 Blast hits to 5497 proteins in 353 species: Archae - 0; Bacteria - 0; Metazoa - 671; Fungi - 286; Plants - 3487; Viruses - 3; Other Eukaryotes - 1561 (source: NCBI BLink).  protein_id AT3G60460.1p  transcript_id AT3G60460.1  protein_id AT3G60460.1p  transcript_id AT3G60460.1  
At3g60470	chr3:022344813	0.0	W/22344813-22346157,22346607-22346884	AT3G60470.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G44930.1); Has 581 Blast hits to 390 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 581; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G60470.1p  transcript_id AT3G60470.1  protein_id AT3G60470.1p  transcript_id AT3G60470.1  
At3g60480	chr3:022347969	0.0	C/22347969-22348208,22347772-22347853,22347680-22347693	AT3G60480.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 8 Blast hits to 8 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G60480.1p  transcript_id AT3G60480.1  protein_id AT3G60480.1p  transcript_id AT3G60480.1  
At3g60490	chr3:022349527	0.0	W/22349527-22350297	AT3G60490.1  CDS  function encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor TINY, putative  note AP2 domain-containing transcription factor TINY, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: leaf apex, hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor TINY, putative (TAIR:AT2G44940.1); Has 3738 Blast hits to 3658 proteins in 202 species: Archae - 0; Bacteria - 11; Metazoa - 1; Fungi - 5; Plants - 3717; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G60490.1p  transcript_id AT3G60490.1  protein_id AT3G60490.1p  transcript_id AT3G60490.1  
At3g60500	chr3:022354245	0.0	W/22354245-22354381,22354606-22354815,22354913-22355008,22355099-22355213,22355318-22355398,22355489-22355677,22355768-22356006,22356106-22356164,22356250-22356440	AT3G60500.1  CDS  gene_syn CER7, ECERIFERUM 7, G3  gene CER7  function Encodes a 3 -5  exoribonuclease, positively regulates CER3 transcription, involved in cuticular wax biosynthesis.  go_component nucleus|GO:0005634|17351114|IDA  go_component cytoplasm|GO:0005737|17351114|IDA  go_process RNA processing|GO:0006396||ISS  go_process wax biosynthetic process|GO:0010025||IMP  go_function 3 -5 -exoribonuclease activity|GO:0000175|17351114|IGI  go_function 3 -5 -exoribonuclease activity|GO:0000175|17351114|ISS  go_function 3 -5 -exoribonuclease activity|GO:0000175||ISS  go_function RNA binding|GO:0003723||ISS  product CER7 (ECERIFERUM 7); 3 -5 -exoribonuclease/ RNA binding  note ECERIFERUM 7 (CER7); FUNCTIONS IN: 3 -5 -exoribonuclease activity, RNA binding; INVOLVED IN: wax biosynthetic process, RNA processing; LOCATED IN: nucleus, cytoplasm; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 2 (InterPro:IPR015847), Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247); BEST Arabidopsis thaliana protein match is: RRP45a (Ribonuclease PH45a); 3 -5 -exoribonuclease/ RNA binding (TAIR:AT3G12990.2); Has 869 Blast hits to 869 proteins in 221 species: Archae - 170; Bacteria - 4; Metazoa - 301; Fungi - 127; Plants - 79; Viruses - 0; Other Eukaryotes - 188 (source: NCBI BLink).  protein_id AT3G60500.1p  transcript_id AT3G60500.1  protein_id AT3G60500.1p  transcript_id AT3G60500.1  
At3g60500	chr3:022354245	0.0	W/22354245-22354381,22354606-22354815,22354913-22355008,22355099-22355213,22355318-22355398,22355489-22355677,22355768-22356006,22356106-22356164,22356250-22356440	AT3G60500.2  CDS  gene_syn CER7, ECERIFERUM 7, G3  gene CER7  function Encodes a 3 -5  exoribonuclease, positively regulates CER3 transcription, involved in cuticular wax biosynthesis.  go_component nucleus|GO:0005634|17351114|IDA  go_component cytoplasm|GO:0005737|17351114|IDA  go_process RNA processing|GO:0006396||ISS  go_process wax biosynthetic process|GO:0010025||IMP  go_function 3 -5 -exoribonuclease activity|GO:0000175|17351114|IGI  go_function 3 -5 -exoribonuclease activity|GO:0000175|17351114|ISS  go_function 3 -5 -exoribonuclease activity|GO:0000175||ISS  go_function RNA binding|GO:0003723||ISS  product CER7 (ECERIFERUM 7); 3 -5 -exoribonuclease/ RNA binding  note ECERIFERUM 7 (CER7); FUNCTIONS IN: 3 -5 -exoribonuclease activity, RNA binding; INVOLVED IN: wax biosynthetic process, RNA processing; LOCATED IN: nucleus, cytoplasm; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 2 (InterPro:IPR015847), Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247); BEST Arabidopsis thaliana protein match is: RRP45a (Ribonuclease PH45a); 3 -5 -exoribonuclease/ RNA binding (TAIR:AT3G12990.2); Has 869 Blast hits to 869 proteins in 221 species: Archae - 170; Bacteria - 4; Metazoa - 301; Fungi - 127; Plants - 79; Viruses - 0; Other Eukaryotes - 188 (source: NCBI BLink).  protein_id AT3G60500.2p  transcript_id AT3G60500.2  protein_id AT3G60500.2p  transcript_id AT3G60500.2  
At3g60510	chr3:022359890	0.0	C/22359890-22360003,22359724-22359804,22359419-22359487,22359266-22359329,22358910-22358989,22358725-22358808,22358497-22358581,22358201-22358286,22357991-22358112,22357838-22357898,22357664-22357762,22357468-22357569,22357342-22357383,22357141-22357257	AT3G60510.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_process metabolic process|GO:0008152||ISS  go_function catalytic activity|GO:0003824||ISS  product enoyl-CoA hydratase/isomerase family protein  note enoyl-CoA hydratase/isomerase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: enoyl-CoA hydratase/isomerase family protein (TAIR:AT4G31810.1); Has 18292 Blast hits to 18285 proteins in 1194 species: Archae - 165; Bacteria - 11167; Metazoa - 972; Fungi - 454; Plants - 328; Viruses - 0; Other Eukaryotes - 5206 (source: NCBI BLink).  protein_id AT3G60510.1p  transcript_id AT3G60510.1  protein_id AT3G60510.1p  transcript_id AT3G60510.1  
At3g60510	chr3:022359890	0.0	C/22359890-22360003,22359724-22359804,22359419-22359487,22359266-22359329,22358910-22358989,22358725-22358808,22358497-22358581,22358201-22358286,22357991-22358112,22357838-22357898,22357664-22357762,22357584-22357592	AT3G60510.2  CDS  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_process metabolic process|GO:0008152||ISS  go_function catalytic activity|GO:0003824||ISS  product enoyl-CoA hydratase/isomerase family protein  note enoyl-CoA hydratase/isomerase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: enoyl-CoA hydratase/isomerase family protein (TAIR:AT4G31810.1); Has 18192 Blast hits to 18192 proteins in 1193 species: Archae - 165; Bacteria - 11148; Metazoa - 969; Fungi - 454; Plants - 321; Viruses - 0; Other Eukaryotes - 5135 (source: NCBI BLink).  protein_id AT3G60510.2p  transcript_id AT3G60510.2  protein_id AT3G60510.2p  transcript_id AT3G60510.2  
At3g60520	chr3:022362367	0.0	C/22362367-22362467,22361751-22362039	AT3G60520.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02070.1); Has 55 Blast hits to 55 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G60520.1p  transcript_id AT3G60520.1  protein_id AT3G60520.1p  transcript_id AT3G60520.1  
At3g60530	chr3:022373348	0.0	W/22373348-22373557,22373635-22374147	AT3G60530.1  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product zinc finger (GATA type) family protein  note zinc finger (GATA type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: zinc finger (GATA type) family protein (TAIR:AT2G45050.1); Has 892 Blast hits to 876 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 33; Fungi - 388; Plants - 422; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT3G60530.1p  transcript_id AT3G60530.1  protein_id AT3G60530.1p  transcript_id AT3G60530.1  
At3g60540	chr3:022375132	0.0	C/22375132-22375377	AT3G60540.1  CDS  go_process protein transport|GO:0015031||ISS  go_function protein transporter activity|GO:0008565||ISS  product sec61beta family protein  note sec61beta family protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein transport; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Preprotein translocase Sec, Sec61-beta subunit, eukarya (InterPro:IPR016482), Preprotein translocase Sec, Sec61-beta subunit (InterPro:IPR005609); BEST Arabidopsis thaliana protein match is: SEC61 BETA; protein transporter (TAIR:AT2G45070.4); Has 280 Blast hits to 280 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 77; Plants - 69; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT3G60540.1p  transcript_id AT3G60540.1  protein_id AT3G60540.1p  transcript_id AT3G60540.1  
At3g60540	chr3:022375132	0.0	C/22375132-22375377	AT3G60540.2  CDS  go_process protein transport|GO:0015031||ISS  go_function protein transporter activity|GO:0008565||ISS  product sec61beta family protein  note sec61beta family protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein transport; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Preprotein translocase Sec, Sec61-beta subunit, eukarya (InterPro:IPR016482), Preprotein translocase Sec, Sec61-beta subunit (InterPro:IPR005609); BEST Arabidopsis thaliana protein match is: SEC61 BETA; protein transporter (TAIR:AT2G45070.4); Has 280 Blast hits to 280 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 77; Plants - 69; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT3G60540.2p  transcript_id AT3G60540.2  protein_id AT3G60540.2p  transcript_id AT3G60540.2  
At3g60550	chr3:022379846	0.0	W/22379846-22380255,22380359-22380641	AT3G60550.1  CDS  gene_syn CYCP3;2, cyclin p3;2  gene CYCP3;2  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase activity|GO:0004693||ISS  product CYCP3;2 (cyclin p3;2); cyclin-dependent protein kinase  note cyclin p3;2 (CYCP3;2); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Negative regulatory factor PREG (InterPro:IPR012389), Cyclin-like (InterPro:IPR011028), Cyclin, N-terminal (InterPro:IPR006671), Cyclin-related 2 (InterPro:IPR013922); BEST Arabidopsis thaliana protein match is: cycp3;1 (cyclin p3;1); cyclin-dependent protein kinase (TAIR:AT2G45080.1); Has 956 Blast hits to 954 proteins in 163 species: Archae - 0; Bacteria - 16; Metazoa - 199; Fungi - 406; Plants - 113; Viruses - 0; Other Eukaryotes - 222 (source: NCBI BLink).  protein_id AT3G60550.1p  transcript_id AT3G60550.1  protein_id AT3G60550.1p  transcript_id AT3G60550.1  
At3g60560	chr3:022382458	0.0	W/22382458-22382778	AT3G60560.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G60560.1p  transcript_id AT3G60560.1  protein_id AT3G60560.1p  transcript_id AT3G60560.1  
At3g60565	chr3:022383922	0.0	C/22383922-22389906	AT3G60565.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 7.6e-249 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element)  
At3g60570	chr3:022391247	0.0	W/22391247-22391400,22391501-22391613,22391701-22391871,22392143-22392463	AT3G60570.1  CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN B5, ATEXPB5, ATHEXP BETA 1.3, EXPANSIN B5, EXPB5  gene ATEXPB5  function member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall modification during multidimensional cell growth|GO:0009831||ISS  product ATEXPB5 (ARABIDOPSIS THALIANA EXPANSIN B5)  note ARABIDOPSIS THALIANA EXPANSIN B5 (ATEXPB5); INVOLVED IN: plant-type cell wall modification during multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Barwin-related endoglucanase (InterPro:IPR009009), Rare lipoprotein A (InterPro:IPR005132), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: ATEXPB4 (ARABIDOPSIS THALIANA EXPANSIN B4) (TAIR:AT2G45110.1); Has 1346 Blast hits to 1345 proteins in 120 species: Archae - 0; Bacteria - 5; Metazoa - 1; Fungi - 23; Plants - 1300; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT3G60570.1p  transcript_id AT3G60570.1  protein_id AT3G60570.1p  transcript_id AT3G60570.1  
At3g60580	chr3:022394007	0.0	W/22394007-22394873	AT3G60580.1  CDS  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT2G45120.1); Has 1947 Blast hits to 1748 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 1362; Fungi - 12; Plants - 516; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT3G60580.1p  transcript_id AT3G60580.1  protein_id AT3G60580.1p  transcript_id AT3G60580.1  
At3g60590	chr3:022398228	0.0	W/22398228-22398420,22398732-22399753	AT3G60590.3  CDS  gene_syn T4C21.1  go_component chloroplast inner membrane|GO:0009706|12766230|IDA  product unknown protein  note unknown protein; LOCATED IN: chloroplast inner membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48460.1); Has 54 Blast hits to 54 proteins in 15 species: Archae - 0; Bacteria - 9; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G60590.3p  transcript_id AT3G60590.3  protein_id AT3G60590.3p  transcript_id AT3G60590.3  
At3g60590	chr3:022398764	0.0	W/22398764-22399753	AT3G60590.2  CDS  gene_syn T4C21.1  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast inner membrane|GO:0009706|12766230|IDA  product unknown protein  note unknown protein; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48460.1); Has 54 Blast hits to 54 proteins in 15 species: Archae - 0; Bacteria - 9; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G60590.2p  transcript_id AT3G60590.2  protein_id AT3G60590.2p  transcript_id AT3G60590.2  
At3g60590	chr3:022399043	0.0	W/22399043-22399753	AT3G60590.1  CDS  gene_syn T4C21.1  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast inner membrane|GO:0009706|12766230|IDA  product unknown protein  note unknown protein; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48460.1); Has 53 Blast hits to 53 proteins in 14 species: Archae - 0; Bacteria - 9; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G60590.1p  transcript_id AT3G60590.1  protein_id AT3G60590.1p  transcript_id AT3G60590.1  
At3g60590	chr3:022399043	0.0	W/22399043-22399753	AT3G60590.4  CDS  gene_syn T4C21.1  go_component chloroplast inner membrane|GO:0009706|12766230|IDA  product unknown protein  note unknown protein; LOCATED IN: chloroplast inner membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48460.1); Has 53 Blast hits to 53 proteins in 14 species: Archae - 0; Bacteria - 9; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G60590.4p  transcript_id AT3G60590.4  protein_id AT3G60590.4p  transcript_id AT3G60590.4  
At3g60600	chr3:022400537	0.0	W/22400537-22400636,22400724-22400794,22400879-22400960,22401061-22401176,22401285-22401440,22401502-22401669	AT3G60600.3  CDS  gene_syn (AT)VAP, VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, VAP, VAP27, VAP27-1, VESICLE ASSOCIATED PROTEIN  gene VAP  function Encodes VAP27 (for Vesicle-Associated Protein). VAP27 has high homology to the VAP33 family of SNARE-like proteins from animals. May be involved in vesicular transport to or from the ER. Located exclusively in limiting membrane of protein storage vacuoles. Binds SRC2.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component protein storage vacuole|GO:0000326|16227454|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum membrane|GO:0005789|11907339|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component integral to membrane|GO:0016021|16227454|IDA  go_process intracellular transport|GO:0046907|11907339|TAS  go_function protein binding|GO:0005515|16227454|IPI  product VAP (VESICLE ASSOCIATED PROTEIN); protein binding  note VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1 (VAP27-1); FUNCTIONS IN: protein binding; INVOLVED IN: intracellular transport; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Vesicle-associated membrane protein (InterPro:IPR016763); BEST Arabidopsis thaliana protein match is: PVA12 (PLANT VAP HOMOLOG 12); structural molecule (TAIR:AT2G45140.1); Has 740 Blast hits to 735 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 375; Fungi - 101; Plants - 209; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT3G60600.3p  transcript_id AT3G60600.3  protein_id AT3G60600.3p  transcript_id AT3G60600.3  
At3g60600	chr3:022400537	0.0	W/22400537-22400636,22400724-22400794,22400879-22400960,22401061-22401176,22401285-22401440,22401522-22401575,22401913-22401990,22402295-22402408	AT3G60600.1  CDS  gene_syn (AT)VAP, VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, VAP, VAP27, VAP27-1, VESICLE ASSOCIATED PROTEIN  gene VAP  function Encodes VAP27 (for Vesicle-Associated Protein). VAP27 has high homology to the VAP33 family of SNARE-like proteins from animals. May be involved in vesicular transport to or from the ER. Located exclusively in limiting membrane of protein storage vacuoles. Binds SRC2.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component protein storage vacuole|GO:0000326|16227454|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum membrane|GO:0005789|11907339|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component integral to membrane|GO:0016021|16227454|IDA  go_process intracellular transport|GO:0046907|11907339|TAS  go_function protein binding|GO:0005515|16227454|IPI  product VAP (VESICLE ASSOCIATED PROTEIN); protein binding  note VESICLE ASSOCIATED PROTEIN (VAP); FUNCTIONS IN: protein binding; INVOLVED IN: intracellular transport; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Vesicle-associated membrane protein (InterPro:IPR016763); BEST Arabidopsis thaliana protein match is: PVA12 (PLANT VAP HOMOLOG 12); structural molecule (TAIR:AT2G45140.1); Has 761 Blast hits to 744 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 376; Fungi - 101; Plants - 223; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT3G60600.1p  transcript_id AT3G60600.1  protein_id AT3G60600.1p  transcript_id AT3G60600.1  
At3g60600	chr3:022400537	0.0	W/22400537-22400636,22400724-22400794,22400879-22400960,22401061-22401176,22401285-22401440,22401522-22401650	AT3G60600.2  CDS  gene_syn (AT)VAP, VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, VAP, VAP27, VAP27-1, VESICLE ASSOCIATED PROTEIN  gene VAP  function Encodes VAP27 (for Vesicle-Associated Protein). VAP27 has high homology to the VAP33 family of SNARE-like proteins from animals. May be involved in vesicular transport to or from the ER. Located exclusively in limiting membrane of protein storage vacuoles. Binds SRC2.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component protein storage vacuole|GO:0000326|16227454|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum membrane|GO:0005789|11907339|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component integral to membrane|GO:0016021|16227454|IDA  go_process intracellular transport|GO:0046907|11907339|TAS  go_function protein binding|GO:0005515|16227454|IPI  product VAP (VESICLE ASSOCIATED PROTEIN); protein binding  note VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1 (VAP27-1); FUNCTIONS IN: protein binding; INVOLVED IN: intracellular transport; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Vesicle-associated membrane protein (InterPro:IPR016763); BEST Arabidopsis thaliana protein match is: PVA12 (PLANT VAP HOMOLOG 12); structural molecule (TAIR:AT2G45140.1); Has 740 Blast hits to 735 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 375; Fungi - 101; Plants - 209; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT3G60600.2p  transcript_id AT3G60600.2  protein_id AT3G60600.2p  transcript_id AT3G60600.2  
At3g60610	chr3:022403237	0.0	C/22403237-22405048	AT3G60610.1  pseudogenic_transcript  pseudo  note pseudogene, putative pre-mRNA processing ribonucleoprotein, similar to U4/U6 snRNP-associated 61 kDa protein (Homo sapiens) GI:18249847; contains Pfam profile PF01798: Putative snoRNA binding domain; blastp match of 63% identity and 1.9e-143 P-value to GP|24059931|dbj|BAC21394.1||AP004010 putative U4/U6 snRNP-associated 61 kDa protein {Oryza sativa (japonica cultivar-group)}  
At3g60613	chr3:022405547	0.0	C/22405547-22405829	AT3G60613.1  pseudogenic_transcript  pseudo  function Pseudogene of AT3G61250; AtMYB17 (myb domain protein 17); DNA binding / transcription factor  
At3g60620	chr3:022406537	0.0	W/22406537-22406779,22406900-22407210,22407293-22407483,22407571-22407695,22407772-22407905,22407973-22408088,22408160-22408239	AT3G60620.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function transferase activity, transferring phosphorus-containing groups|GO:0016772||IEA  go_component membrane|GO:0016020||ISS  go_process phospholipid biosynthetic process|GO:0008654||ISS  go_function phosphatidate cytidylyltransferase activity|GO:0004605||ISS  product phosphatidate cytidylyltransferase family protein  note phosphatidate cytidylyltransferase family protein; FUNCTIONS IN: phosphatidate cytidylyltransferase activity, transferase activity, transferring phosphorus-containing groups; INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidate cytidylyltransferase (InterPro:IPR000374); BEST Arabidopsis thaliana protein match is: phosphatidate cytidylyltransferase family protein (TAIR:AT2G45150.1); Has 4810 Blast hits to 4810 proteins in 1409 species: Archae - 0; Bacteria - 2685; Metazoa - 155; Fungi - 91; Plants - 78; Viruses - 0; Other Eukaryotes - 1801 (source: NCBI BLink).  protein_id AT3G60620.1p  transcript_id AT3G60620.1  protein_id AT3G60620.1p  transcript_id AT3G60620.1  
At3g60630	chr3:022410496	0.0	C/22410496-22412367	AT3G60630.1  CDS  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product scarecrow transcription factor family protein  note scarecrow transcription factor family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: scarecrow transcription factor family protein (TAIR:AT2G45160.1); Has 1295 Blast hits to 1269 proteins in 185 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 1288; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G60630.1p  transcript_id AT3G60630.1  protein_id AT3G60630.1p  transcript_id AT3G60630.1  
At3g60640	chr3:022416118	0.0	W/22416118-22416154,22416230-22416285,22416515-22416567,22416663-22416781,22416871-22416971	AT3G60640.1  CDS  gene_syn ATG8G, AUTOPHAGY 8G  gene ATG8G  go_process autophagy|GO:0006914||ISS  go_function microtubule binding|GO:0008017||ISS  product ATG8G (AUTOPHAGY 8G); microtubule binding  note AUTOPHAGY 8G (ATG8G); FUNCTIONS IN: microtubule binding; INVOLVED IN: autophagy; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: ATG8F (autophagy 8f); microtubule binding (TAIR:AT4G16520.2); Has 1156 Blast hits to 1154 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 574; Fungi - 125; Plants - 171; Viruses - 3; Other Eukaryotes - 283 (source: NCBI BLink).  protein_id AT3G60640.1p  transcript_id AT3G60640.1  protein_id AT3G60640.1p  transcript_id AT3G60640.1  
At3g60647	chr3:022419351	0.0	W/22419351-22419548	AT3G60647.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G60647.1p  transcript_id AT3G60647.1  protein_id AT3G60647.1p  transcript_id AT3G60647.1  
At3g60650	chr3:022419951	0.0	W/22419951-22420274	AT3G60650.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G60650.1p  transcript_id AT3G60650.1  protein_id AT3G60650.1p  transcript_id AT3G60650.1  
At3g60660	chr3:022421481	0.0	W/22421481-22421577,22421659-22421783,22421928-22422040,22422146-22422233,22422370-22422437,22422516-22422621,22422697-22422726,22422831-22422944,22423090-22423167	AT3G60660.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1395 (InterPro:IPR009829); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55860.1); Has 82 Blast hits to 82 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 58; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G60660.1p  transcript_id AT3G60660.1  protein_id AT3G60660.1p  transcript_id AT3G60660.1  
At3g60670	chr3:022425898	0.0	C/22425898-22426074,22425717-22425791,22425397-22425537,22424695-22425039	AT3G60670.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function zinc ion binding|GO:0008270||ISS  product zinc-binding protein, putative  note zinc-binding protein, putative; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G12646.1); Has 193 Blast hits to 193 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 193; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G60670.1p  transcript_id AT3G60670.1  protein_id AT3G60670.1p  transcript_id AT3G60670.1  
At3g60680	chr3:022430246	0.0	W/22430246-22431745	AT3G60680.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF641, plant (InterPro:IPR006943); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45260.1); Has 192 Blast hits to 192 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 2; Plants - 175; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT3G60680.1p  transcript_id AT3G60680.1  protein_id AT3G60680.1p  transcript_id AT3G60680.1  
At3g60690	chr3:022435262	0.0	W/22435262-22435774	AT3G60690.1  CDS  go_process response to auxin stimulus|GO:0009733||ISS  product auxin-responsive family protein  note auxin-responsive family protein; INVOLVED IN: response to auxin stimulus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein-related (TAIR:AT2G45210.1); Has 696 Blast hits to 685 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 695; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G60690.1p  transcript_id AT3G60690.1  protein_id AT3G60690.1p  transcript_id AT3G60690.1  
At3g60700	chr3:022438402	0.0	W/22438402-22438775,22438862-22439147	AT3G60700.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, root, leaf; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1163 (InterPro:IPR009544); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70040.1); Has 19 Blast hits to 19 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G60700.1p  transcript_id AT3G60700.1  protein_id AT3G60700.1p  transcript_id AT3G60700.1  
At3g60710	chr3:022440198	0.0	W/22440198-22440373,22440461-22440755,22440901-22441041,22441122-22441472	AT3G60710.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G78840.1); Has 974 Blast hits to 836 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 972; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G60710.1p  transcript_id AT3G60710.1  protein_id AT3G60710.1p  transcript_id AT3G60710.1  
At3g60720	chr3:022442035	0.0	W/22442035-22442761,22443374-22443481,22443604-22443608	AT3G60720.1  CDS  gene_syn PDLP8, PLASMODESMATA-LOCATED PROTEIN 8  gene PDLP8  function Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product PDLP8 (PLASMODESMATA-LOCATED PROTEIN 8)  note PLASMODESMATA-LOCATED PROTEIN 8 (PDLP8); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, 4 leaf senescence stage, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: PDLP6 (PLASMODESMATA-LOCATED PROTEIN 6) (TAIR:AT2G01660.2); Has 1002 Blast hits to 862 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 996; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G60720.1p  transcript_id AT3G60720.1  protein_id AT3G60720.1p  transcript_id AT3G60720.1  
At3g60730	chr3:022444955	0.0	W/22444955-22445408,22445575-22445988,22446073-22446264,22446361-22446492,22446859-22447226	AT3G60730.1  CDS  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT1G23200.1); Has 1261 Blast hits to 1227 proteins in 184 species: Archae - 0; Bacteria - 260; Metazoa - 1; Fungi - 130; Plants - 870; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G60730.1p  transcript_id AT3G60730.1  protein_id AT3G60730.1p  transcript_id AT3G60730.1  
At3g60740	chr3:022453110	0.0	C/22453110-22453325,22452464-22453011,22452206-22452308,22451830-22452006,22451488-22451670,22451042-22451158,22450836-22450940,22450543-22450713,22450231-22450446,22449810-22450008,22449413-22449618,22449108-22449329,22448499-22449008,22448142-22448411,22448031-22448075,22447764-22447949,22447385-22447675	AT3G60740.1  CDS  gene_syn CHAMPIGNON, CHO, EMB133, EMBRYO DEFECTIVE 133, TFC D, TITAN 1, TTN1, TUBULIN FOLDING COFACTOR D  gene TTN1  function Encodes tubulin-folding cofactor D. Mutants arrest during embryogenesis with embryos that are small, mushroom-shaped ( pilz ) and consist of only one or few large cells each containing one or more variably enlarged nuclei and often cell wall stubs. Gene product necessary for continuous microtubule organization.  go_process cytokinesis|GO:0000910|11959844|IGI  go_process protein folding|GO:0006457|11959844|ISS  go_process microtubule-based process|GO:0007017|11788751|IMP  go_process tubulin complex assembly|GO:0007021|11959844|ISS  go_process embryonic development ending in seed dormancy|GO:0009793|9807824|IMP  go_function tubulin binding|GO:0015631|11959844|ISS  product TTN1 (TITAN 1); tubulin binding  note TITAN 1 (TTN1); FUNCTIONS IN: tubulin binding; INVOLVED IN: embryonic development ending in seed dormancy, protein folding, microtubule-based process, tubulin complex assembly, cytokinesis; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-type fold (InterPro:IPR016024); Has 335 Blast hits to 308 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 138; Fungi - 105; Plants - 19; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT3G60740.1p  transcript_id AT3G60740.1  protein_id AT3G60740.1p  transcript_id AT3G60740.1  
At3g60750	chr3:022454004	0.0	W/22454004-22454486,22454638-22454728,22454832-22454937,22455026-22455308,22455390-22455538,22455625-22455778,22455865-22456824	AT3G60750.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function catalytic activity|GO:0003824||IEA  go_function transketolase activity|GO:0004802||IEA  go_function transketolase activity|GO:0004802||ISS  product transketolase, putative  note transketolase, putative; FUNCTIONS IN: catalytic activity, transketolase activity; INVOLVED IN: response to cadmium ion, response to salt stress; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial transketolase (InterPro:IPR005478), Transketolase, N-terminal (InterPro:IPR005474), Transketolase, C-terminal (InterPro:IPR005476), Transketolase C-terminal-like (InterPro:IPR015941), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase, central region (InterPro:IPR005475); BEST Arabidopsis thaliana protein match is: transketolase, putative (TAIR:AT2G45290.1); Has 13810 Blast hits to 13750 proteins in 1529 species: Archae - 132; Bacteria - 6298; Metazoa - 281; Fungi - 206; Plants - 110; Viruses - 0; Other Eukaryotes - 6783 (source: NCBI BLink).  protein_id AT3G60750.1p  transcript_id AT3G60750.1  protein_id AT3G60750.1p  transcript_id AT3G60750.1  
At3g60760	chr3:022459149	0.0	C/22459149-22459202,22458616-22458930	AT3G60760.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G60760.1p  transcript_id AT3G60760.1  protein_id AT3G60760.1p  transcript_id AT3G60760.1  
At3g60770	chr3:022461634	0.0	C/22461634-22461656,22461485-22461557,22460929-22461067,22460643-22460829,22460525-22460558	AT3G60770.1  CDS  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S13 (RPS13A)  note 40S ribosomal protein S13 (RPS13A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, cell wall, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13/S15, N-terminal (InterPro:IPR012606), Ribosomal protein S15 (InterPro:IPR000589), S15/NS1, RNA-binding (InterPro:IPR009068); BEST Arabidopsis thaliana protein match is: ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A); structural constituent of ribosome (TAIR:AT4G00100.1); Has 787 Blast hits to 787 proteins in 301 species: Archae - 177; Bacteria - 0; Metazoa - 232; Fungi - 99; Plants - 90; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).  protein_id AT3G60770.1p  transcript_id AT3G60770.1  protein_id AT3G60770.1p  transcript_id AT3G60770.1  
At3g60780	chr3:022462695	0.0	W/22462695-22462754,22463034-22463630	AT3G60780.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1442 (InterPro:IPR009902); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45360.1); Has 51 Blast hits to 51 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G60780.1p  transcript_id AT3G60780.1  protein_id AT3G60780.1p  transcript_id AT3G60780.1  
At3g60790	chr3:022464623	0.0	W/22464623-22464985,22465680-22466297,22466386-22466556,22466634-22466948	AT3G60790.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box protein-related  note F-box protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G67390.1); Has 962 Blast hits to 953 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 960; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G60790.1p  transcript_id AT3G60790.1  protein_id AT3G60790.1p  transcript_id AT3G60790.1  
At3g60800	chr3:022469064	0.0	C/22469064-22469273,22468673-22468898,22468492-22468583,22468264-22468387,22468085-22468170,22467733-22467798,22467486-22467605	AT3G60800.1  CDS  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc finger (DHHC type) family protein  note zinc finger (DHHC type) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: zinc finger (DHHC type) family protein (TAIR:AT4G22750.1); Has 3967 Blast hits to 3964 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 1946; Fungi - 528; Plants - 397; Viruses - 0; Other Eukaryotes - 1096 (source: NCBI BLink).  protein_id AT3G60800.1p  transcript_id AT3G60800.1  protein_id AT3G60800.1p  transcript_id AT3G60800.1  
At3g60805	chr3:022470241	0.0	C/22470241-22470313	AT3G60805.1  tRNA  gene_syn 67315.TRNA-LYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Lys (anticodon: CTT)  transcript_id AT3G60805.1  
At3g60810	chr3:022470579	0.0	W/22470579-22470715,22470800-22470856,22470937-22471059,22471149-22471215,22471323-22471415,22471495-22471608,22471703-22471756	AT3G60810.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1499 (InterPro:IPR010865); Has 355 Blast hits to 355 proteins in 103 species: Archae - 0; Bacteria - 211; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT3G60810.1p  transcript_id AT3G60810.1  protein_id AT3G60810.1p  transcript_id AT3G60810.1  
At3g60810	chr3:022470579	0.0	W/22470579-22470715,22470815-22470856,22470937-22471059,22471149-22471215,22471323-22471415,22471495-22471608,22471703-22471756	AT3G60810.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1499 (InterPro:IPR010865); Has 355 Blast hits to 355 proteins in 103 species: Archae - 0; Bacteria - 211; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT3G60810.2p  transcript_id AT3G60810.2  protein_id AT3G60810.2p  transcript_id AT3G60810.2  
At3g60820	chr3:022473763	0.0	C/22473763-22473809,22473521-22473628,22472967-22473048,22472729-22472858,22472501-22472643,22472311-22472401,22472038-22472108	AT3G60820.2  CDS  gene_syn 20S PROTEASOME BETA SUBUNIT PBF1, PBF1  gene PBF1  function Encodes 20S proteasome beta subunit PBF1 (PBF1).  go_component plasma membrane|GO:0005886|17644812|IDA  go_function threonine-type endopeptidase activity|GO:0004298||IEA  go_component proteasome core complex|GO:0005839|9373170|TAS  go_component proteasome core complex|GO:0005839|9611183|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_function peptidase activity|GO:0008233||ISS  product PBF1; peptidase/ threonine-type endopeptidase  note PBF1; FUNCTIONS IN: peptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: PBC1 (PROTEASOME BETA SUBUNIT C1); peptidase/ threonine-type endopeptidase (TAIR:AT1G21720.1); Has 2914 Blast hits to 2914 proteins in 293 species: Archae - 249; Bacteria - 8; Metazoa - 1263; Fungi - 640; Plants - 298; Viruses - 0; Other Eukaryotes - 456 (source: NCBI BLink).  protein_id AT3G60820.2p  transcript_id AT3G60820.2  protein_id AT3G60820.2p  transcript_id AT3G60820.2  
At3g60820	chr3:022473763	0.0	C/22473763-22473809,22473521-22473628,22472967-22473048,22472729-22472858,22472501-22472643,22472315-22472401,22472038-22472112	AT3G60820.1  CDS  gene_syn 20S PROTEASOME BETA SUBUNIT PBF1, PBF1  gene PBF1  function Encodes 20S proteasome beta subunit PBF1 (PBF1).  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_function threonine-type endopeptidase activity|GO:0004298||IEA  go_component proteasome core complex|GO:0005839|9373170|TAS  go_component proteasome core complex|GO:0005839|9611183|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_function peptidase activity|GO:0008233||ISS  product PBF1; peptidase/ threonine-type endopeptidase  note PBF1; FUNCTIONS IN: peptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, plasma membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: PBC1 (PROTEASOME BETA SUBUNIT C1); peptidase/ threonine-type endopeptidase (TAIR:AT1G21720.1); Has 2949 Blast hits to 2949 proteins in 292 species: Archae - 251; Bacteria - 8; Metazoa - 1234; Fungi - 720; Plants - 283; Viruses - 0; Other Eukaryotes - 453 (source: NCBI BLink).  protein_id AT3G60820.1p  transcript_id AT3G60820.1  protein_id AT3G60820.1p  transcript_id AT3G60820.1  
At3g60830	chr3:022474298	0.0	W/22474298-22474600,22474803-22474944,22475193-22475434,22475511-22475694,22475780-22476000	AT3G60830.1  CDS  gene_syn ACTIN-RELATED PROTEIN 7, ARP7, ATARP7  gene ATARP7  function Encodes an actin-related protein required for normal embryogenesis, plant architecture and floral organ abscission.  go_component nucleus|GO:0005634|12609034|IDA  go_process establishment or maintenance of chromatin architecture|GO:0006325|12609034|TAS  go_process anatomical structure morphogenesis|GO:0009653|16040647|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|16040647|IMP  go_process floral organ abscission|GO:0010227|16040647|IMP  go_function structural constituent of cytoskeleton|GO:0005200|11891255|ISS  go_function structural constituent of cytoskeleton|GO:0005200||ISS  product ATARP7 (ACTIN-RELATED PROTEIN 7); structural constituent of cytoskeleton  note ACTIN-RELATED PROTEIN 7 (ATARP7); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: embryonic development ending in seed dormancy, anatomical structure morphogenesis, establishment or maintenance of chromatin architecture, floral organ abscission; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: ACT3 (actin 3); structural constituent of cytoskeleton (TAIR:AT3G53750.1); Has 9176 Blast hits to 8997 proteins in 2051 species: Archae - 0; Bacteria - 24; Metazoa - 4508; Fungi - 1828; Plants - 946; Viruses - 2; Other Eukaryotes - 1868 (source: NCBI BLink).  protein_id AT3G60830.1p  transcript_id AT3G60830.1  protein_id AT3G60830.1p  transcript_id AT3G60830.1  
At3g60840	chr3:022480281	0.0	C/22480281-22480463,22479942-22480193,22479636-22479842,22479393-22479548,22479124-22479283,22478842-22478993,22478677-22478764,22478508-22478581,22478349-22478423,22478006-22478261,22477573-22477916	AT3G60840.1  CDS  gene_syn MAP65-4, MICROTUBULE-ASSOCIATED PROTEIN 65-4  gene MAP65-4  go_component vacuole|GO:0005773|15539469|IDA  go_component nucleus|GO:0005634|15469496|IDA  go_component spindle|GO:0005819|15469496|IDA  go_component phragmoplast|GO:0009524|15469496|IDA  go_component phragmoplast|GO:0009524|19060108|IDA  go_component preprophase band|GO:0009574|19060108|IDA  go_process anaphase|GO:0051322|19060108|IDA  product MAP65-4 (MICROTUBULE-ASSOCIATED PROTEIN 65-4)  note MICROTUBULE-ASSOCIATED PROTEIN 65-4 (MAP65-4); INVOLVED IN: anaphase; LOCATED IN: nucleus, vacuole, preprophase band, spindle, phragmoplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MAP65/ASE1 (InterPro:IPR007145); BEST Arabidopsis thaliana protein match is: PLE (PLEIADE); microtubule binding (TAIR:AT5G51600.1); Has 7464 Blast hits to 5691 proteins in 479 species: Archae - 217; Bacteria - 636; Metazoa - 3981; Fungi - 586; Plants - 368; Viruses - 22; Other Eukaryotes - 1654 (source: NCBI BLink).  protein_id AT3G60840.1p  transcript_id AT3G60840.1  protein_id AT3G60840.1p  transcript_id AT3G60840.1  
At3g60850	chr3:022482053	0.0	W/22482053-22483999	AT3G60850.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; Has 18 Blast hits to 18 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G60850.1p  transcript_id AT3G60850.1  protein_id AT3G60850.1p  transcript_id AT3G60850.1  
At3g60860	chr3:022484804	0.0	W/22484804-22486005,22486123-22486440,22486541-22486886,22486989-22487411,22487517-22487809,22487963-22488236,22488460-22488959,22489081-22489402,22489487-22489865,22489950-22490647,22490884-22491510	AT3G60860.1  CDS  go_component intracellular|GO:0005622||IEA  go_process regulation of ARF protein signal transduction|GO:0032012||IEA  go_function ARF guanyl-nucleotide exchange factor activity|GO:0005086||IEA  go_function binding|GO:0005488||IEA  go_function guanyl-nucleotide exchange factor activity|GO:0005085||ISS  product guanine nucleotide exchange family protein  note guanine nucleotide exchange family protein; FUNCTIONS IN: binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity; INVOLVED IN: regulation of ARF protein signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904), Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF1981, SEC7 associated (InterPro:IPR015403); BEST Arabidopsis thaliana protein match is: EDA10 (embryo sac development arrest 10); ARF guanyl-nucleotide exchange factor/ binding / guanyl-nucleotide exchange factor (TAIR:AT1G01960.1); Has 2220 Blast hits to 2027 proteins in 177 species: Archae - 0; Bacteria - 24; Metazoa - 1229; Fungi - 446; Plants - 144; Viruses - 0; Other Eukaryotes - 377 (source: NCBI BLink).  protein_id AT3G60860.1p  transcript_id AT3G60860.1  protein_id AT3G60860.1p  transcript_id AT3G60860.1  
At3g60870	chr3:022493204	0.0	W/22493204-22494001	AT3G60870.1  CDS  product DNA-binding protein-related  note DNA-binding protein-related; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: DNA-binding protein-related (TAIR:AT2G45430.1); Has 421 Blast hits to 420 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 419; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G60870.1p  transcript_id AT3G60870.1  protein_id AT3G60870.1p  transcript_id AT3G60870.1  
At3g60880	chr3:022495086	0.0	W/22495086-22495171,22495449-22495532,22495615-22496542	AT3G60880.2  CDS  go_process metabolic process|GO:0008152||IEA  go_process diaminopimelate biosynthetic process|GO:0019877||IEA  go_function catalytic activity|GO:0003824||IEA  go_function dihydrodipicolinate synthase activity|GO:0008840||IEA  go_function lyase activity|GO:0016829||IEA  go_process lysine biosynthetic process via diaminopimelate|GO:0009089||ISS  go_function dihydrodipicolinate synthase activity|GO:0008840||ISS  product dihydrodipicolinate synthase 1 (DHDPS1) (DHDPS) (DHPS1)  note dihydrodipicolinate synthase 1 (DHDPS1) (DHDPS) (DHPS1); FUNCTIONS IN: lyase activity, catalytic activity, dihydrodipicolinate synthase activity; INVOLVED IN: lysine biosynthetic process via diaminopimelate, diaminopimelate biosynthetic process, metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dihydrodipicolinate synthase subfamily (InterPro:IPR005263), Aldolase-type TIM barrel (InterPro:IPR013785), Dihydrodipicolinate synthetase (InterPro:IPR002220); BEST Arabidopsis thaliana protein match is: DHDPS2 (DIHYDRODIPICOLINATE SYNTHASE); catalytic/ dihydrodipicolinate synthase/ lyase (TAIR:AT2G45440.1); Has 8474 Blast hits to 8474 proteins in 1465 species: Archae - 196; Bacteria - 5076; Metazoa - 85; Fungi - 175; Plants - 65; Viruses - 0; Other Eukaryotes - 2877 (source: NCBI BLink).  protein_id AT3G60880.2p  transcript_id AT3G60880.2  protein_id AT3G60880.2p  transcript_id AT3G60880.2  
At3g60880	chr3:022495086	0.0	W/22495086-22495171,22495452-22495532,22495615-22496542	AT3G60880.1  CDS  go_process metabolic process|GO:0008152||IEA  go_process diaminopimelate biosynthetic process|GO:0019877||IEA  go_function catalytic activity|GO:0003824||IEA  go_function dihydrodipicolinate synthase activity|GO:0008840||IEA  go_function lyase activity|GO:0016829||IEA  go_process lysine biosynthetic process via diaminopimelate|GO:0009089||ISS  go_function dihydrodipicolinate synthase activity|GO:0008840||ISS  product dihydrodipicolinate synthase 1 (DHDPS1) (DHDPS) (DHPS1)  note dihydrodipicolinate synthase 1 (DHDPS1) (DHDPS) (DHPS1); FUNCTIONS IN: lyase activity, catalytic activity, dihydrodipicolinate synthase activity; INVOLVED IN: lysine biosynthetic process via diaminopimelate, metabolic process, diaminopimelate biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Dihydrodipicolinate synthase subfamily (InterPro:IPR005263), Dihydrodipicolinate synthetase (InterPro:IPR002220); BEST Arabidopsis thaliana protein match is: DHDPS2 (DIHYDRODIPICOLINATE SYNTHASE); catalytic/ dihydrodipicolinate synthase/ lyase (TAIR:AT2G45440.1); Has 8474 Blast hits to 8474 proteins in 1465 species: Archae - 196; Bacteria - 5076; Metazoa - 85; Fungi - 175; Plants - 65; Viruses - 0; Other Eukaryotes - 2877 (source: NCBI BLink).  protein_id AT3G60880.1p  transcript_id AT3G60880.1  protein_id AT3G60880.1p  transcript_id AT3G60880.1  
At3g60890	chr3:022497318	0.0	C/22497318-22497442,22497024-22497216	AT3G60890.1  CDS  gene_syn LITTLE ZIPPER 2, ZPR2  gene ZPR2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515|18055602|IPI  product ZPR2 (LITTLE ZIPPER 2); protein binding  note LITTLE ZIPPER 2 (ZPR2); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30 Blast hits to 30 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G60890.1p  transcript_id AT3G60890.1  protein_id AT3G60890.1p  transcript_id AT3G60890.1  
At3g60890	chr3:022497318	0.0	C/22497318-22497442,22497024-22497219	AT3G60890.2  CDS  gene_syn LITTLE ZIPPER 2, ZPR2  gene ZPR2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515|18055602|IPI  product ZPR2 (LITTLE ZIPPER 2); protein binding  note LITTLE ZIPPER 2 (ZPR2); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ZPR1 (LITTLE ZIPPER 1); protein binding (TAIR:AT2G45450.1); Has 21 Blast hits to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G60890.2p  transcript_id AT3G60890.2  protein_id AT3G60890.2p  transcript_id AT3G60890.2  
At3g60897	chr3:022498840	0.0	C/22498840-22498971	AT3G60897.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G60897.1p  transcript_id AT3G60897.1  protein_id AT3G60897.1p  transcript_id AT3G60897.1  
At3g60900	chr3:022499573	0.0	C/22499573-22500841	AT3G60900.1  CDS  gene_syn FLA10  gene FLA10  go_component plasma membrane|GO:0005886|17644812|IDA  go_component anchored to plasma membrane|GO:0046658|12805588|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  product FLA10  note FLA10; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FLA8 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 8) (TAIR:AT2G45470.1); Has 12081 Blast hits to 6122 proteins in 671 species: Archae - 102; Bacteria - 3569; Metazoa - 1134; Fungi - 757; Plants - 1832; Viruses - 697; Other Eukaryotes - 3990 (source: NCBI BLink).  protein_id AT3G60900.1p  transcript_id AT3G60900.1  protein_id AT3G60900.1p  transcript_id AT3G60900.1  
At3g60910	chr3:022501727	0.0	W/22501727-22501910,22502029-22502142,22502242-22502310,22502406-22502425,22502512-22502564,22502678-22502708,22502820-22502901,22502977-22503182	AT3G60910.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  go_function catalytic activity|GO:0003824||ISS  product catalytic/ methyltransferase  note catalytic/ methyltransferase; FUNCTIONS IN: methyltransferase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: catalytic/ methyltransferase (TAIR:AT3G17365.1); Has 1098 Blast hits to 1097 proteins in 299 species: Archae - 33; Bacteria - 359; Metazoa - 291; Fungi - 34; Plants - 105; Viruses - 0; Other Eukaryotes - 276 (source: NCBI BLink).  protein_id AT3G60910.1p  transcript_id AT3G60910.1  protein_id AT3G60910.1p  transcript_id AT3G60910.1  
At3g60920	chr3:022512149	0.0	C/22512149-22513031,22511849-22511923,22511042-22511733,22510847-22510895,22510306-22510769,22510009-22510143,22509783-22509887,22509492-22509605,22509308-22509384,22509009-22509090,22508428-22508754,22507648-22508270,22507293-22507377,22506915-22507109,22506490-22506801,22505829-22506278,22505551-22505693,22505380-22505449,22505191-22505274,22505017-22505070,22504845-22504913,22504663-22504752,22504443-22504559,22504106-22504255,22503768-22503827,22503629-22503688,22503328-22503549	AT3G60920.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product beige/BEACH domain-containing protein  note beige/BEACH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Beige/BEACH (InterPro:IPR000409); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein / beige-related (TAIR:AT2G45540.1); Has 1400 Blast hits to 1222 proteins in 153 species: Archae - 0; Bacteria - 22; Metazoa - 708; Fungi - 109; Plants - 97; Viruses - 0; Other Eukaryotes - 464 (source: NCBI BLink).  protein_id AT3G60920.1p  transcript_id AT3G60920.1  protein_id AT3G60920.1p  transcript_id AT3G60920.1  
At3g60930	chr3:022514027	0.0	W/22514027-22516871	AT3G60930.2  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G06603.1); contains domain DNA clamp (SSF55979)  transcript_id AT3G60930.2  
At3g60930	chr3:022514415	0.0	W/22514415-22516871	AT3G60930.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G06603.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G34590.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G40133.1); similar to hypothetical protein 27.t00126 [Brassica oleracea] (GB:ABD65062.1); contains domain DNA clamp (SSF55979)  
At3g60935	chr3:022517150	0.0	C/22517150-22520275	AT3G60935.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 5.9e-127 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At3g60940	chr3:022522924	0.0	C/22522924-22523029,22522775-22522813,22522611-22522687,22522012-22522240,22521615-22521937	AT3G60940.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61028.1); Has 129 Blast hits to 127 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 10; Plants - 112; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G60940.1p  transcript_id AT3G60940.1  protein_id AT3G60940.1p  transcript_id AT3G60940.1  
At3g60950	chr3:022524475	0.0	W/22524475-22524528,22524965-22525024,22525164-22525214,22525570-22525666,22525913-22525992,22526093-22526191,22526295-22526375,22526473-22526558,22526748-22526781,22526886-22526972,22527065-22527193,22527482-22527537,22527626-22527775,22527921-22528032,22528152-22528283,22528367-22528424,22528795-22528898,22528991-22529134,22529218-22529265,22529350-22529430,22529519-22529575	AT3G60950.1  CDS  go_component plasma membrane|GO:0005886|17644812|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61030.1); Has 1924 Blast hits to 1845 proteins in 524 species: Archae - 48; Bacteria - 681; Metazoa - 518; Fungi - 110; Plants - 234; Viruses - 0; Other Eukaryotes - 333 (source: NCBI BLink).  protein_id AT3G60950.1p  transcript_id AT3G60950.1  protein_id AT3G60950.1p  transcript_id AT3G60950.1  
At3g60952	chr3:022529623	0.0	W/22529623-22530306	AT3G60952.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT3G60955  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G60952.1  
At3g60955	chr3:022529643	0.0	C/22529643-22532476	AT3G60955.1  pseudogenic_transcript  pseudo  gene_syn CYP76C8P  gene CYP76C8P  function a cytochrome P450 pseudogene. overlaps with a real gene on the other strand.  note pseudogene, cytochrome P450 family, similar to Cytochrome P450 76C3 (SP:O64638) (Arabidopsis thaliana); blastp match of 33% identity and 7.2e-27 P-value to GP|17065916|emb|CAC80883.1||AJ251269 geraniol 10-hydroxylase {Catharanthus roseus}  
At3g60957	chr3:022533783	0.0	W/22533783-22535556	AT3G60957.1  pseudogenic_transcript  pseudo  function pseudogene of GPT  
At3g60960	chr3:022535729	0.0	W/22535729-22536940	AT3G60960.1  CDS  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G28380.1); Has 2752 Blast hits to 1400 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 2739; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT3G60960.1p  transcript_id AT3G60960.1  protein_id AT3G60960.1p  transcript_id AT3G60960.1  
At3g60961	chr3:022541319	0.0	W/22541319-22541401,22551636-22551705,22551835-22551915,22551995-22552102,22552185-22552253	AT3G60961.1  CDS  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleobase, nucleoside, nucleotide kinase activity|GO:0019205||IEA  go_component cellular_component|GO:0005575||ND  product ATP binding / nucleobase, nucleoside, nucleotide kinase  note ATP binding / nucleobase, nucleoside, nucleotide kinase; FUNCTIONS IN: nucleobase, nucleoside, nucleotide kinase activity, ATP binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: uridylate kinase, putative / uridine monophosphate kinase, putative / UMP kinase, putative (TAIR:AT3G60180.2); Has 5871 Blast hits to 5813 proteins in 1412 species: Archae - 57; Bacteria - 3267; Metazoa - 700; Fungi - 177; Plants - 176; Viruses - 0; Other Eukaryotes - 1494 (source: NCBI BLink).  protein_id AT3G60961.1p  transcript_id AT3G60961.1  protein_id AT3G60961.1p  transcript_id AT3G60961.1  
At3g60965	chr3:022541491	0.0	C/22541491-22551393	AT3G60965.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 8.8e-146 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element)  
At3g60966	chr3:022552718	0.0	W/22552718-22553137	AT3G60966.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT2G44581.1); Has 5805 Blast hits to 5787 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 1849; Fungi - 454; Plants - 2607; Viruses - 15; Other Eukaryotes - 880 (source: NCBI BLink).  protein_id AT3G60966.1p  transcript_id AT3G60966.1  protein_id AT3G60966.1p  transcript_id AT3G60966.1  
At3g60970	chr3:022557535	0.0	W/22557535-22558671,22558764-22558850,22558939-22559016,22559128-22559574,22559668-22559784,22559915-22560209,22560292-22560506,22560587-22560892,22560972-22561035,22561131-22561370,22561448-22561575	AT3G60970.1  CDS  gene_syn ATMRP15  gene ATMRP15  function member of MRP subfamily  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|11346655|ISS  product ATMRP15; ATPase, coupled to transmembrane movement of substances  note ATMRP15; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: endomembrane system, integral to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATMRP9; ATPase, coupled to transmembrane movement of substances (TAIR:AT3G60160.1); Has 389817 Blast hits to 207222 proteins in 2558 species: Archae - 7282; Bacteria - 276456; Metazoa - 11308; Fungi - 5152; Plants - 3258; Viruses - 19; Other Eukaryotes - 86342 (source: NCBI BLink).  protein_id AT3G60970.1p  transcript_id AT3G60970.1  protein_id AT3G60970.1p  transcript_id AT3G60970.1  
At3g60972	chr3:022561916	0.0	C/22561916-22562576	AT3G60972.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G60972.1  
At3g60980	chr3:022565440	0.0	C/22565440-22566678	AT3G60980.1  CDS  go_process response to oxidative stress|GO:0006979|18614705|IMP  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: response to oxidative stress; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: GRP23 (GLUTAMINE-RICH PROTEIN23); binding (TAIR:AT1G10270.1); Has 892 Blast hits to 620 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 883; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G60980.1p  transcript_id AT3G60980.1  protein_id AT3G60980.1p  transcript_id AT3G60980.1  
At3g60990	chr3:022569801	0.0	C/22569801-22569973,22569283-22569418	AT3G60990.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48190.1); Has 68 Blast hits to 67 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G60990.1p  transcript_id AT3G60990.1  protein_id AT3G60990.1p  transcript_id AT3G60990.1  
At3g61010	chr3:022574073	0.0	C/22574073-22574179,22573848-22573928,22573637-22573718,22572884-22573076,22572446-22572792,22572240-22572322,22572081-22572164,22571916-22571988,22571749-22571766	AT3G61010.1  CDS  gene_syn AT3G61000  go_component cytoplasm|GO:0005737||IEA  go_process iron ion transport|GO:0006826||IEA  go_process cellular iron ion homeostasis|GO:0006879||IEA  go_function binding|GO:0005488||IEA  go_function ferric iron binding|GO:0008199||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity|GO:0033925||IEA  go_function transition metal ion binding|GO:0046914||IEA  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product glycosyl hydrolase family protein 85  note glycosyl hydrolase family protein 85; FUNCTIONS IN: in 6 functions; INVOLVED IN: cellular iron ion homeostasis, iron ion transport; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferritin, N-terminal (InterPro:IPR001519), Ferritin-related (InterPro:IPR012347), Glycoside hydrolase, family 85 (InterPro:IPR005201), Ferritin-like (InterPro:IPR009040), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078), Ferritin and Dps (InterPro:IPR008331); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 85 protein (TAIR:AT3G11040.1); Has 775 Blast hits to 767 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 568; Fungi - 0; Plants - 187; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT3G61010.1p  transcript_id AT3G61010.1  protein_id AT3G61010.1p  transcript_id AT3G61010.1  
At3g61020	chr3:022575591	0.0	W/22575591-22577497	AT3G61020.1  pseudogenic_transcript  pseudo  note pseudogene, similar to P0034A04.28, several hypothetical proteins - Arabidopsis thaliana; blastp match of 43% identity and 2.2e-46 P-value to GP|29837187|dbj|BAC75569.1||AP004333 P0034A04.28 {Oryza sativa (japonica cultivar-group)}  
At3g61028	chr3:022584104	0.0	C/22584104-22584209,22583955-22583993,22583791-22583867,22583218-22583449,22582844-22583148	AT3G61028.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60940.1); Has 128 Blast hits to 126 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 12; Plants - 114; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G61028.1p  transcript_id AT3G61028.1  protein_id AT3G61028.1p  transcript_id AT3G61028.1  
At3g61030	chr3:022585655	0.0	W/22585655-22585708,22586145-22586204,22586344-22586394,22586751-22586847,22587094-22587173,22587274-22587372,22587476-22587556,22587654-22587739,22587929-22587962,22588067-22588153,22588246-22588374,22588663-22588718,22588807-22588956,22589102-22589213,22589333-22589464,22589548-22589605,22589976-22590079,22590172-22590315,22590531-22590611,22590700-22590756	AT3G61030.1  CDS  gene_syn T27I15.120  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60950.1); Has 1924 Blast hits to 1845 proteins in 524 species: Archae - 48; Bacteria - 681; Metazoa - 518; Fungi - 110; Plants - 234; Viruses - 0; Other Eukaryotes - 333 (source: NCBI BLink).  protein_id AT3G61030.1p  transcript_id AT3G61030.1  protein_id AT3G61030.1p  transcript_id AT3G61030.1  
At3g61035	chr3:022593356	0.0	C/22593356-22593649,22593240-22593311,22592639-22593166,22592252-22592380	AT3G61035.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process biological_process|GO:0008150||ND  product cytochrome P450 family protein  note cytochrome P450 family protein; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, heme binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP76C2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT2G45570.1); Has 5192 Blast hits to 5173 proteins in 380 species: Archae - 0; Bacteria - 2; Metazoa - 2075; Fungi - 158; Plants - 2864; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT3G61035.1p  transcript_id AT3G61035.1  protein_id AT3G61035.1p  transcript_id AT3G61035.1  
At3g61040	chr3:022595749	0.0	C/22595749-22596125,22594912-22595416,22594532-22594837	AT3G61040.2  CDS  gene_syn CYP76C7  gene CYP76C7  function encodes a protein with cytochrome P450 domain  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP76C7; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP76C7; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP76C4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT2G45550.1); Has 18177 Blast hits to 18108 proteins in 1088 species: Archae - 12; Bacteria - 1153; Metazoa - 8633; Fungi - 2996; Plants - 4864; Viruses - 0; Other Eukaryotes - 519 (source: NCBI BLink).  protein_id AT3G61040.2p  transcript_id AT3G61040.2  protein_id AT3G61040.2p  transcript_id AT3G61040.2  
At3g61040	chr3:022595749	0.0	C/22595749-22596125,22594912-22595416,22594553-22594837,22594074-22594403	AT3G61040.1  CDS  gene_syn CYP76C7  gene CYP76C7  function encodes a protein with cytochrome P450 domain  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP76C7; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP76C7; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP76C4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT2G45550.1); Has 24167 Blast hits to 24063 proteins in 1288 species: Archae - 28; Bacteria - 2330; Metazoa - 10410; Fungi - 4664; Plants - 5709; Viruses - 6; Other Eukaryotes - 1020 (source: NCBI BLink).  protein_id AT3G61040.1p  transcript_id AT3G61040.1  protein_id AT3G61040.1p  transcript_id AT3G61040.1  
At3g61050	chr3:022597485	0.0	W/22597485-22597589,22597987-22598088,22598386-22598436,22598799-22598919,22599124-22599242,22599340-22599438,22599540-22599620,22599714-22599799,22600000-22600225,22600318-22600482,22600555-22600932	AT3G61050.1  CDS  gene_syn NTMC2T4, NTMC2TYPE4  gene NTMC2T4  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process biological_process|GO:0008150||ND  go_function lipid binding|GO:0008289||ISS  product NTMC2T4; lipid binding  note NTMC2T4; FUNCTIONS IN: lipid binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, cultured cell, callus, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61030.1); Has 5488 Blast hits to 4000 proteins in 263 species: Archae - 8; Bacteria - 218; Metazoa - 3499; Fungi - 613; Plants - 617; Viruses - 2; Other Eukaryotes - 531 (source: NCBI BLink).  protein_id AT3G61050.1p  transcript_id AT3G61050.1  protein_id AT3G61050.1p  transcript_id AT3G61050.1  
At3g61050	chr3:022597485	0.0	W/22597485-22597589,22597987-22598088,22598386-22598436,22598799-22598919,22599124-22599242,22599340-22599438,22599540-22599620,22599714-22599799,22600000-22600225,22600318-22600482,22600555-22600932	AT3G61050.2  CDS  gene_syn NTMC2T4, NTMC2TYPE4  gene NTMC2T4  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process biological_process|GO:0008150||ND  go_function lipid binding|GO:0008289||ISS  product NTMC2T4; lipid binding  note NTMC2T4; FUNCTIONS IN: lipid binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, cultured cell, callus, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61030.1); Has 5488 Blast hits to 4000 proteins in 263 species: Archae - 8; Bacteria - 218; Metazoa - 3499; Fungi - 613; Plants - 617; Viruses - 2; Other Eukaryotes - 531 (source: NCBI BLink).  protein_id AT3G61050.2p  transcript_id AT3G61050.2  protein_id AT3G61050.2p  transcript_id AT3G61050.2  
At3g61060	chr3:022603166	0.0	W/22603166-22603492,22603581-22603702,22603910-22604336	AT3G61060.2  CDS  gene_syn Arabidopsis thaliana phloem protein 2-A13, AtPP2-A13  gene AtPP2-A13  go_process response to wounding|GO:0009611|17953483|IEP  go_function carbohydrate binding|GO:0030246|12529520|ISS  product AtPP2-A13 (Arabidopsis thaliana phloem protein 2-A13); carbohydrate binding  note Arabidopsis thaliana phloem protein 2-A13 (AtPP2-A13); FUNCTIONS IN: carbohydrate binding; INVOLVED IN: response to wounding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: AtPP2-A12 (Phloem protein 2-A12); carbohydrate binding (TAIR:AT1G12710.1); Has 238 Blast hits to 236 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 238; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G61060.2p  transcript_id AT3G61060.2  protein_id AT3G61060.2p  transcript_id AT3G61060.2  
At3g61060	chr3:022603166	0.0	W/22603166-22603492,22603584-22603702,22603910-22604336	AT3G61060.1  CDS  gene_syn Arabidopsis thaliana phloem protein 2-A13, AtPP2-A13  gene AtPP2-A13  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process response to wounding|GO:0009611|17953483|IEP  go_function carbohydrate binding|GO:0030246|12529520|ISS  product AtPP2-A13 (Arabidopsis thaliana phloem protein 2-A13); carbohydrate binding  note Arabidopsis thaliana phloem protein 2-A13 (AtPP2-A13); FUNCTIONS IN: carbohydrate binding; INVOLVED IN: N-terminal protein myristoylation, response to wounding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: AtPP2-A12 (Phloem protein 2-A12); carbohydrate binding (TAIR:AT1G12710.1); Has 242 Blast hits to 240 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 242; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G61060.1p  transcript_id AT3G61060.1  protein_id AT3G61060.1p  transcript_id AT3G61060.1  
At3g61070	chr3:022605968	0.0	C/22605968-22606159,22605762-22605836,22605589-22605663,22605406-22605486,22605261-22605323,22605007-22605180,22604873-22604908	AT3G61070.1  CDS  gene_syn PEX11E  gene PEX11E  function member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation.  go_component mitochondrion|GO:0005739|15276431|IDA  go_component peroxisomal membrane|GO:0005778||ISS  go_component integral to peroxisomal membrane|GO:0005779|17220199|IDA  go_process peroxisome organization|GO:0007031|17478547|IMP  go_process response to light stimulus|GO:0009416|17220199|IEP  go_process peroxisome fission|GO:0016559|17220199|IMP  go_process peroxisome fission|GO:0016559||ISS  product PEX11E  note PEX11E; INVOLVED IN: peroxisome fission, response to light stimulus, peroxisome organization; LOCATED IN: mitochondrion, peroxisomal membrane, integral to peroxisomal membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peroxisomal biogenesis factor 11 (InterPro:IPR008733); BEST Arabidopsis thaliana protein match is: PEX11D (TAIR:AT2G45740.3); Has 187 Blast hits to 187 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 44; Fungi - 26; Plants - 104; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT3G61070.1p  transcript_id AT3G61070.1  protein_id AT3G61070.1p  transcript_id AT3G61070.1  
At3g61070	chr3:022605968	0.0	C/22605968-22606159,22605762-22605836,22605589-22605663,22605406-22605486,22605261-22605323,22605007-22605180,22604873-22604908	AT3G61070.2  CDS  gene_syn PEX11E  gene PEX11E  function member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation.  go_component peroxisomal membrane|GO:0005778||ISS  go_component integral to peroxisomal membrane|GO:0005779|17220199|IDA  go_process peroxisome organization|GO:0007031|17478547|IMP  go_process response to light stimulus|GO:0009416|17220199|IEP  go_process peroxisome fission|GO:0016559|17220199|IMP  go_process peroxisome fission|GO:0016559||ISS  product PEX11E  note PEX11E; INVOLVED IN: peroxisome fission, response to light stimulus, peroxisome organization; LOCATED IN: peroxisomal membrane, integral to peroxisomal membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peroxisomal biogenesis factor 11 (InterPro:IPR008733); BEST Arabidopsis thaliana protein match is: PEX11D (TAIR:AT2G45740.3); Has 187 Blast hits to 187 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 44; Fungi - 26; Plants - 104; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT3G61070.2p  transcript_id AT3G61070.2  protein_id AT3G61070.2p  transcript_id AT3G61070.2  
At3g61080	chr3:022607152	0.0	W/22607152-22607239,22607407-22607560,22607646-22607736,22607832-22607906,22607983-22608071,22608166-22608284,22608363-22608503,22608582-22608658,22608737-22608883	AT3G61080.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component mitochondrion|GO:0005739|15705060|TAS  go_process biological_process|GO:0008150||ND  go_function kinase activity|GO:0016301|15705060|IDA  go_function kinase activity|GO:0016301||ISS  product fructosamine kinase family protein  note fructosamine kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fructosamine/Ketosamine-3-kinase (InterPro:IPR016477), Protein kinase-like (InterPro:IPR011009); Has 1267 Blast hits to 1267 proteins in 446 species: Archae - 2; Bacteria - 716; Metazoa - 115; Fungi - 104; Plants - 24; Viruses - 0; Other Eukaryotes - 306 (source: NCBI BLink).  protein_id AT3G61080.1p  transcript_id AT3G61080.1  protein_id AT3G61080.1p  transcript_id AT3G61080.1  
At3g61090	chr3:022609795	0.0	C/22609795-22609822,22609479-22609682,22609094-22609404	AT3G61090.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, inflorescence meristem, pedicel, flower, seed; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61100.1); Has 86 Blast hits to 84 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G61090.1p  transcript_id AT3G61090.1  protein_id AT3G61090.1p  transcript_id AT3G61090.1  
At3g61100	chr3:022611257	0.0	C/22611257-22611266,22610939-22611148,22610574-22610854	AT3G61100.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61090.1); Has 52 Blast hits to 52 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G61100.1p  transcript_id AT3G61100.1  protein_id AT3G61100.1p  transcript_id AT3G61100.1  
At3g61105	chr3:022611410	0.0	W/22611410-22611490	AT3G61105.1  tRNA  gene_syn 67316.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: AAG)  transcript_id AT3G61105.1  
At3g61110	chr3:022611710	0.0	W/22611710-22611712,22611990-22612091,22612386-22612414,22612506-22612632	AT3G61110.1  CDS  gene_syn ARABIDOPSIS RIBOSOMAL PROTEIN S27, ARS27A, RIBOSOMAL PROTEIN S27  gene ARS27A  function Arabidopsis ribosomal protein  go_component cell wall|GO:0005618|16287169|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840|9889204|ISS  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27); structural constituent of ribosome  note ARABIDOPSIS RIBOSOMAL PROTEIN S27 (ARS27A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein, zinc-binding (InterPro:IPR011332), Ribosomal protein S27e (InterPro:IPR000592); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S27 (RPS27A) (TAIR:AT2G45710.1); Has 711 Blast hits to 711 proteins in 279 species: Archae - 93; Bacteria - 0; Metazoa - 298; Fungi - 98; Plants - 99; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).  protein_id AT3G61110.1p  transcript_id AT3G61110.1  protein_id AT3G61110.1p  transcript_id AT3G61110.1  
At3g61111	chr3:022613917	0.0	C/22613917-22613919,22613638-22613739,22613443-22613471,22613230-22613356	AT3G61111.1  CDS  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  product structural constituent of ribosome  note structural constituent of ribosome; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein, zinc-binding (InterPro:IPR011332), Ribosomal protein S27e (InterPro:IPR000592); BEST Arabidopsis thaliana protein match is: ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27); structural constituent of ribosome (TAIR:AT3G61110.1); Has 728 Blast hits to 728 proteins in 286 species: Archae - 108; Bacteria - 0; Metazoa - 297; Fungi - 98; Plants - 99; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink).  protein_id AT3G61111.1p  transcript_id AT3G61111.1  protein_id AT3G61111.1p  transcript_id AT3G61111.1  
At3g61113	chr3:022615393	0.0	C/22615393-22615415,22614963-22615038,22614792-22614874,22614582-22614699	AT3G61113.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ubiquitin related modifier 1 (InterPro:IPR015221), Ubiquitin-related modifier 1 (InterPro:IPR017188), Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp (InterPro:IPR016155); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45695.1); Has 242 Blast hits to 242 proteins in 127 species: Archae - 2; Bacteria - 0; Metazoa - 93; Fungi - 74; Plants - 18; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT3G61113.1p  transcript_id AT3G61113.1  protein_id AT3G61113.1p  transcript_id AT3G61113.1  
At3g61117	chr3:022616430	0.0	C/22616430-22616558	AT3G61117.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G61117.1p  transcript_id AT3G61117.1  protein_id AT3G61117.1p  transcript_id AT3G61117.1  
At3g61118	chr3:022616581	0.0	C/22616581-22617427	AT3G61118.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G61118.1  
At3g61120	chr3:022620285	0.0	C/22620285-22620466,22619588-22619663,22619355-22619416,22619160-22619259,22619016-22619057,22618890-22618925,22618615-22618763,22618414-22618501	AT3G61120.1  CDS  gene_syn AGAMOUS-LIKE 13, AGL13, MADS-BOX PROTEIN AGL13  gene AGL13  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL13 (AGAMOUS-LIKE 13); DNA binding / transcription factor  note AGAMOUS-LIKE 13 (AGL13); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGL6 (AGAMOUS-LIKE 6); DNA binding / transcription factor (TAIR:AT2G45650.1); Has 5193 Blast hits to 5189 proteins in 691 species: Archae - 0; Bacteria - 0; Metazoa - 556; Fungi - 210; Plants - 4372; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT3G61120.1p  transcript_id AT3G61120.1  protein_id AT3G61120.1p  transcript_id AT3G61120.1  
At3g61130	chr3:022622399	0.0	W/22622399-22622549,22622877-22622902,22623002-22623061,22623152-22623277,22623367-22623430,22623508-22623554,22623669-22624003,22624098-22624455,22624566-22625144,22625239-22625514	AT3G61130.1  CDS  gene_syn GALACTURONOSYLTRANSFERASE 1, GAUT1, JS36, LGT1  gene GAUT1  function Encodes a protein with putative galacturonosyltransferase activity.  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process homogalacturonan biosynthetic process|GO:0010289|16540543|IDA  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|IDA  product GAUT1 (GALACTURONOSYLTRANSFERASE 1); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups  note GALACTURONOSYLTRANSFERASE 1 (GAUT1); FUNCTIONS IN: polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process, homogalacturonan biosynthetic process; LOCATED IN: Golgi apparatus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: GAUT3 (Galacturonosyltransferase 3); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT4G38270.1); Has 789 Blast hits to 784 proteins in 125 species: Archae - 3; Bacteria - 187; Metazoa - 126; Fungi - 0; Plants - 438; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT3G61130.1p  transcript_id AT3G61130.1  protein_id AT3G61130.1p  transcript_id AT3G61130.1  
At3g61140	chr3:022626335	0.0	W/22626335-22626724,22627353-22627673,22627769-22627885,22627966-22628051,22628393-22628627,22628719-22628895	AT3G61140.1  CDS  gene_syn ARABIDOPSIS THALIANA FUSCA 6, ATFUS6, ATSK31, CONSTITUTIVE PHOTOMORPHOGENIC 11, COP11, COP9 SIGNALOSOME SUBUNIT 1, CSN1, EMB78, EMBRYO DEFECTIVE 78, FUS6, FUSCA 6, SHAGGY-LIKE KINASE 31, SK31  gene FUS6  function Represses photomorphogenesis and induces skotomorphogenesis in the dark. Component of the nuclear-localized COP9 complex. Mutants display striking purple coloration due to anthocyanin accumulation in their cotyledons, first become defective during embryogenesis and exhibit limited seedling development.  go_component nucleus|GO:0005634|8953769|IDA  go_component nucleus|GO:0005634||ISS  go_component signalosome|GO:0008180|11019806|TAS  go_component signalosome|GO:0008180|9723217|IPI  go_process protein deneddylation|GO:0000338|11854419|TAS  go_process protein complex assembly|GO:0006461|11854419|IDA  go_process hyperosmotic response|GO:0006972|12376626|IEP  go_process photomorphogenesis|GO:0009640|11019806|TAS  go_process response to absence of light|GO:0009646|12376626|IEP  go_process response to salt stress|GO:0009651|12376626|IEP  go_process embryonic development ending in seed dormancy|GO:0009793|8130643|IMP  go_process cullin deneddylation|GO:0010388|17307927|IMP  go_function molecular_function|GO:0003674||ND  product FUS6 (FUSCA 6)  note FUSCA 6 (FUS6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 8 processes; LOCATED IN: signalosome, nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component region PCI (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: 26S proteasome regulatory subunit, putative (RPN7) (TAIR:AT4G24820.2); Has 889 Blast hits to 886 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 457; Fungi - 165; Plants - 170; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).  protein_id AT3G61140.1p  transcript_id AT3G61140.1  protein_id AT3G61140.1p  transcript_id AT3G61140.1  
At3g61150	chr3:022630769	0.0	W/22630769-22630939,22631018-22631226,22631310-22631427,22631498-22632184,22632279-22632377,22632469-22632669,22633072-22633249,22633474-22633841,22634480-22634875	AT3G61150.1  CDS  gene_syn HD-GL2-1, HDG1, HOMEODOMAIN GLABROUS 1, HOMEODOMAIN-GLABRA2 1  gene HDG1  function Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product HDG1 (HOMEODOMAIN GLABROUS 1); DNA binding / transcription factor  note HOMEODOMAIN GLABROUS 1 (HDG1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ANL2 (ANTHOCYANINLESS 2); transcription factor/ transcription regulator (TAIR:AT4G00730.1); Has 9741 Blast hits to 9408 proteins in 454 species: Archae - 0; Bacteria - 4; Metazoa - 7606; Fungi - 140; Plants - 1846; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink).  protein_id AT3G61150.1p  transcript_id AT3G61150.1  protein_id AT3G61150.1p  transcript_id AT3G61150.1  
At3g61160	chr3:022636209	0.0	W/22636209-22636271,22636378-22636515,22636629-22636721,22636822-22636881,22636964-22637236,22637321-22637395,22637481-22637537,22637623-22637763,22637855-22637905,22637989-22638084,22638192-22638275,22638354-22638456,22638532-22638593	AT3G61160.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_function protein kinase activity|GO:0004672||ISS  product shaggy-related protein kinase beta / ASK-beta (ASK2)  note shaggy-related protein kinase beta / ASK-beta (ASK2); FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATSK32 (SHAGGY-LIKE PROTEIN KINASE 32); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT4G00720.1); Has 77750 Blast hits to 76797 proteins in 2265 species: Archae - 34; Bacteria - 5891; Metazoa - 33698; Fungi - 7809; Plants - 14538; Viruses - 395; Other Eukaryotes - 15385 (source: NCBI BLink).  protein_id AT3G61160.1p  transcript_id AT3G61160.1  protein_id AT3G61160.1p  transcript_id AT3G61160.1  
At3g61160	chr3:022636209	0.0	W/22636209-22636271,22636378-22636536,22636629-22636721,22636822-22636881,22636964-22637236,22637321-22637395,22637481-22637537,22637623-22637763,22637855-22637905,22637989-22638084,22638192-22638275,22638354-22638456,22638532-22638593	AT3G61160.2  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_function protein kinase activity|GO:0004672||ISS  product shaggy-related protein kinase beta / ASK-beta (ASK2)  note shaggy-related protein kinase beta / ASK-beta (ASK2); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATSK32 (SHAGGY-LIKE PROTEIN KINASE 32); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT4G00720.1); Has 77717 Blast hits to 76780 proteins in 2266 species: Archae - 34; Bacteria - 5889; Metazoa - 33698; Fungi - 7803; Plants - 14511; Viruses - 397; Other Eukaryotes - 15385 (source: NCBI BLink).  protein_id AT3G61160.2p  transcript_id AT3G61160.2  protein_id AT3G61160.2p  transcript_id AT3G61160.2  
At3g61170	chr3:022639710	0.0	C/22639710-22641237,22638928-22639603,22638691-22638838	AT3G61170.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G27610.1); Has 16470 Blast hits to 5039 proteins in 154 species: Archae - 0; Bacteria - 8; Metazoa - 86; Fungi - 31; Plants - 16068; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink).  protein_id AT3G61170.1p  transcript_id AT3G61170.1  protein_id AT3G61170.1p  transcript_id AT3G61170.1  
At3g61172	chr3:022642065	0.0	C/22642065-22642110,22641764-22641942	AT3G61172.1  CDS  gene_syn LCR8, Low-molecular-weight cysteine-rich 8  gene LCR8  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR8 (Low-molecular-weight cysteine-rich 8)  note Low-molecular-weight cysteine-rich 8 (LCR8); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); BEST Arabidopsis thaliana protein match is: LCR6 (Low-molecular-weight cysteine-rich 6) (TAIR:AT5G47077.1); Has 31 Blast hits to 31 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G61172.1p  transcript_id AT3G61172.1  protein_id AT3G61172.1p  transcript_id AT3G61172.1  
At3g61175	chr3:022643261	0.0	C/22643261-22643309,22642983-22643167	AT3G61175.1  CDS  gene_syn LCR52, Low-molecular-weight cysteine-rich 52  gene LCR52  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||IEA  product LCR52 (Low-molecular-weight cysteine-rich 52)  note Low-molecular-weight cysteine-rich 52 (LCR52); INVOLVED IN: defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: LCR53 (Low-molecular-weight cysteine-rich 53) (TAIR:AT3G61177.1); Has 41 Blast hits to 41 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G61175.1p  transcript_id AT3G61175.1  protein_id AT3G61175.1p  transcript_id AT3G61175.1  
At3g61177	chr3:022644743	0.0	C/22644743-22644791,22644470-22644648	AT3G61177.1  CDS  gene_syn LCR53, Low-molecular-weight cysteine-rich 53  gene LCR53  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||IEA  product LCR53 (Low-molecular-weight cysteine-rich 53)  note Low-molecular-weight cysteine-rich 53 (LCR53); INVOLVED IN: defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: LCR52 (Low-molecular-weight cysteine-rich 52) (TAIR:AT3G61175.1); Has 41 Blast hits to 41 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G61177.1p  transcript_id AT3G61177.1  protein_id AT3G61177.1p  transcript_id AT3G61177.1  
At3g61180	chr3:022645680	0.0	W/22645680-22646224,22646425-22646544,22646640-22646772,22646854-22647018,22647114-22647290	AT3G61180.1  CDS  go_component plasma membrane|GO:0005886|17151019|IDA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G11680.1); Has 6278 Blast hits to 6260 proteins in 205 species: Archae - 0; Bacteria - 6; Metazoa - 2235; Fungi - 448; Plants - 2615; Viruses - 32; Other Eukaryotes - 942 (source: NCBI BLink).  protein_id AT3G61180.1p  transcript_id AT3G61180.1  protein_id AT3G61180.1p  transcript_id AT3G61180.1  
At3g61182	chr3:022648090	0.0	C/22648090-22648138,22647771-22647952	AT3G61182.1  CDS  gene_syn LCR54, Low-molecular-weight cysteine-rich 54  gene LCR54  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||IEA  product LCR54 (Low-molecular-weight cysteine-rich 54)  note Low-molecular-weight cysteine-rich 54 (LCR54); INVOLVED IN: defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: LCR30 (Low-molecular-weight cysteine-rich 30) (TAIR:AT3G43505.1); Has 28 Blast hits to 28 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G61182.1p  transcript_id AT3G61182.1  protein_id AT3G61182.1p  transcript_id AT3G61182.1  
At3g61185	chr3:022648833	0.0	C/22648833-22649205	AT3G61185.1  pseudogenic_transcript  pseudo  function Encodes a defensin-like (DEFL) family protein.  
At3g61190	chr3:022650837	0.0	C/22650837-22651415	AT3G61190.1  CDS  gene_syn BAP1, BON ASSOCIATION PROTEIN 1  gene BAP1  function Encodes a protein with a C2 domain that binds to BON1 in yeast two hybrid analyses. Its ability to bind to phospholipids is enhanced by calcium ions. Involved in maintaining cell homeostasis.  go_component membrane|GO:0016020|17018034|IDA  go_process response to temperature stimulus|GO:0009266|11544183|IEP  go_process response to heat|GO:0009408|17018034|IEP  go_process response to cold|GO:0009409|17018034|IEP  go_process response to wounding|GO:0009611|17018034|IEP  go_process response to wounding|GO:0009611|17953483|IEP  go_process response to salicylic acid stimulus|GO:0009751|17018034|IEP  go_process cellular homeostasis|GO:0019725|11544183|IPI  go_process negative regulation of defense response|GO:0031348|17018034|IMP  go_function protein binding|GO:0005515|11544183|IPI  go_function phospholipid binding|GO:0005543|17018034|IDA  product BAP1 (BON ASSOCIATION PROTEIN 1); phospholipid binding / protein binding  note BON ASSOCIATION PROTEIN 1 (BAP1); FUNCTIONS IN: protein binding, phospholipid binding; INVOLVED IN: in 7 processes; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: BAP2 (BON ASSOCIATION PROTEIN 2) (TAIR:AT2G45760.1); Has 33 Blast hits to 33 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 1; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G61190.1p  transcript_id AT3G61190.1  protein_id AT3G61190.1p  transcript_id AT3G61190.1  
At3g61198	chr3:022655884	0.0	C/22655884-22656599	AT3G61198.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G61198.1  
At3g61200	chr3:022658075	0.0	C/22658075-22658350,22657835-22657981,22657599-22657742	AT3G61200.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function acyl-CoA thioesterase activity|GO:0016291||ISS  go_function hydrolase activity, acting on ester bonds|GO:0016788||ISS  product thioesterase family protein  note thioesterase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioesterase superfamily (InterPro:IPR006683); BEST Arabidopsis thaliana protein match is: thioesterase family protein (TAIR:AT1G04290.1); Has 199 Blast hits to 199 proteins in 45 species: Archae - 1; Bacteria - 14; Metazoa - 48; Fungi - 10; Plants - 107; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT3G61200.1p  transcript_id AT3G61200.1  protein_id AT3G61200.1p  transcript_id AT3G61200.1  
At3g61210	chr3:022659657	0.0	C/22659657-22659815,22658881-22659507	AT3G61210.1  CDS  go_component cellular_component|GO:0005575||ND  product embryo-abundant protein-related  note embryo-abundant protein-related; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 12 (InterPro:IPR013217); BEST Arabidopsis thaliana protein match is: embryo-abundant protein-related (TAIR:AT1G55450.1); Has 688 Blast hits to 684 proteins in 244 species: Archae - 4; Bacteria - 369; Metazoa - 61; Fungi - 81; Plants - 109; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT3G61210.1p  transcript_id AT3G61210.1  protein_id AT3G61210.1p  transcript_id AT3G61210.1  
At3g61220	chr3:022663025	0.0	W/22663025-22663044,22663138-22663390,22663492-22663557,22663671-22663841,22663936-22664316	AT3G61220.1  CDS  go_component plasma membrane|GO:0005886|17644812|IDA  go_process defense response|GO:0006952|18599651|IMP  go_function oxidoreductase activity|GO:0016491||ISS  go_function (+)-neomenthol dehydrogenase activity|GO:0047501|18599651|IDA  go_function (-)-menthol dehydrogenase activity|GO:0047504|18599651|IDA  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: (-)-menthol dehydrogenase activity, oxidoreductase activity, (+)-neomenthol dehydrogenase activity; INVOLVED IN: defense response; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT2G24190.1); Has 51177 Blast hits to 51130 proteins in 1941 species: Archae - 350; Bacteria - 30311; Metazoa - 4274; Fungi - 2433; Plants - 1287; Viruses - 0; Other Eukaryotes - 12522 (source: NCBI BLink).  protein_id AT3G61220.1p  transcript_id AT3G61220.1  protein_id AT3G61220.1p  transcript_id AT3G61220.1  
At3g61230	chr3:022665366	0.0	C/22665366-22665503,22665184-22665283,22665057-22665085,22664601-22664975	AT3G61230.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product LIM domain-containing protein  note LIM domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: LIM domain-containing protein (TAIR:AT2G45800.1); Has 4557 Blast hits to 2965 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 3883; Fungi - 16; Plants - 332; Viruses - 0; Other Eukaryotes - 326 (source: NCBI BLink).  protein_id AT3G61230.1p  transcript_id AT3G61230.1  protein_id AT3G61230.1p  transcript_id AT3G61230.1  
At3g61240	chr3:022666590	0.0	W/22666590-22666876,22667047-22667107,22667207-22667441,22667532-22667770,22668140-22668391,22668481-22668661,22668753-22668841,22668916-22668989,22669076-22669154	AT3G61240.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD/DEAH box helicase, putative (RH12)  note DEAD/DEAH box helicase, putative (RH12); FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (TAIR:AT2G45810.1); Has 38149 Blast hits to 31557 proteins in 1824 species: Archae - 426; Bacteria - 11683; Metazoa - 8068; Fungi - 4281; Plants - 1592; Viruses - 82; Other Eukaryotes - 12017 (source: NCBI BLink).  protein_id AT3G61240.1p  transcript_id AT3G61240.1  protein_id AT3G61240.1p  transcript_id AT3G61240.1  
At3g61240	chr3:022666590	0.0	W/22666590-22666876,22667047-22667107,22667207-22667441,22667532-22667770,22668140-22668391,22668481-22668661,22668753-22668841,22668916-22668989,22669076-22669154	AT3G61240.2  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD/DEAH box helicase, putative (RH12)  note DEAD/DEAH box helicase, putative (RH12); FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (TAIR:AT2G45810.1); Has 38149 Blast hits to 31557 proteins in 1824 species: Archae - 426; Bacteria - 11683; Metazoa - 8068; Fungi - 4281; Plants - 1592; Viruses - 82; Other Eukaryotes - 12017 (source: NCBI BLink).  protein_id AT3G61240.2p  transcript_id AT3G61240.2  protein_id AT3G61240.2p  transcript_id AT3G61240.2  
At3g61250	chr3:022671306	0.0	W/22671306-22671438,22671697-22671826,22671915-22672551	AT3G61250.1  CDS  gene_syn AtMYB17, myb domain protein 17  gene AtMYB17  function Member of the R2R3 factor gene family.  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product AtMYB17 (myb domain protein 17); DNA binding / transcription factor  note myb domain protein 17 (AtMYB17); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to jasmonic acid stimulus, regulation of transcription, DNA-dependent, response to salicylic acid stimulus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: ATMYB16 (MYB DOMAIN PROTEIN 16); DNA binding / transcription factor (TAIR:AT5G15310.2); Has 6222 Blast hits to 5827 proteins in 353 species: Archae - 0; Bacteria - 0; Metazoa - 586; Fungi - 303; Plants - 3760; Viruses - 3; Other Eukaryotes - 1570 (source: NCBI BLink).  protein_id AT3G61250.1p  transcript_id AT3G61250.1  protein_id AT3G61250.1p  transcript_id AT3G61250.1  
At3g61260	chr3:022676482	0.0	C/22676482-22676701,22676026-22676079,22675857-22675944,22675686-22675767,22675403-22675597	AT3G61260.1  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process biological_process|GO:0008150||ND  go_function binding|GO:0005488||ISS  product DNA-binding family protein / remorin family protein  note DNA-binding family protein / remorin family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal region (InterPro:IPR005516), Remorin, N-terminal region (InterPro:IPR005518); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT2G45820.1); Has 7363 Blast hits to 4653 proteins in 692 species: Archae - 12; Bacteria - 1846; Metazoa - 1409; Fungi - 602; Plants - 495; Viruses - 172; Other Eukaryotes - 2827 (source: NCBI BLink).  protein_id AT3G61260.1p  transcript_id AT3G61260.1  protein_id AT3G61260.1p  transcript_id AT3G61260.1  
At3g61270	chr3:022678270	0.0	W/22678270-22678407,22678511-22679037,22679114-22679306,22679398-22679462,22679550-22679760,22679850-22680212	AT3G61270.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro:IPR008539); BEST Arabidopsis thaliana protein match is: DTA2 (DOWNSTREAM TARGET OF AGL15 2) (TAIR:AT2G45830.1); Has 461 Blast hits to 457 proteins in 95 species: Archae - 0; Bacteria - 32; Metazoa - 201; Fungi - 83; Plants - 117; Viruses - 4; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT3G61270.1p  transcript_id AT3G61270.1  protein_id AT3G61270.1p  transcript_id AT3G61270.1  
At3g61280	chr3:022681145	0.0	W/22681145-22681321,22681575-22682173,22682287-22682479,22682702-22682766,22682870-22683080,22683224-22683589	AT3G61280.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro:IPR008539); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61290.1); Has 467 Blast hits to 463 proteins in 98 species: Archae - 0; Bacteria - 38; Metazoa - 201; Fungi - 82; Plants - 115; Viruses - 4; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT3G61280.1p  transcript_id AT3G61280.1  protein_id AT3G61280.1p  transcript_id AT3G61280.1  
At3g61280	chr3:022681145	0.0	W/22681145-22681321,22681575-22682173,22682287-22682479,22682702-22682869	AT3G61280.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro:IPR008539); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61290.1); Has 246 Blast hits to 246 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 107; Fungi - 38; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G61280.2p  transcript_id AT3G61280.2  protein_id AT3G61280.2p  transcript_id AT3G61280.2  
At3g61290	chr3:022684407	0.0	W/22684407-22684924,22685599-22685791,22685925-22685989,22686091-22686301,22686392-22686772	AT3G61290.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro:IPR008539); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61280.1); Has 450 Blast hits to 447 proteins in 91 species: Archae - 0; Bacteria - 32; Metazoa - 199; Fungi - 79; Plants - 112; Viruses - 2; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT3G61290.1p  transcript_id AT3G61290.1  protein_id AT3G61290.1p  transcript_id AT3G61290.1  
At3g61300	chr3:022687662	0.0	W/22687662-22690580	AT3G61300.1  CDS  go_process tryptophan biosynthetic process|GO:0000162||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: tryptophan biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal, plant (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT4G11610.1); Has 4843 Blast hits to 3631 proteins in 212 species: Archae - 0; Bacteria - 0; Metazoa - 3192; Fungi - 336; Plants - 918; Viruses - 8; Other Eukaryotes - 389 (source: NCBI BLink).  protein_id AT3G61300.1p  transcript_id AT3G61300.1  protein_id AT3G61300.1p  transcript_id AT3G61300.1  
At3g61310	chr3:022691989	0.0	C/22691989-22692445,22691606-22691673,22691373-22691504,22691126-22691287,22690799-22691044	AT3G61310.1  CDS  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product DNA-binding family protein  note DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding, conserved site (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: DNA-binding family protein (TAIR:AT2G45850.2); Has 526 Blast hits to 524 proteins in 50 species: Archae - 0; Bacteria - 4; Metazoa - 79; Fungi - 12; Plants - 426; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT3G61310.1p  transcript_id AT3G61310.1  protein_id AT3G61310.1p  transcript_id AT3G61310.1  
At3g61320	chr3:022694002	0.0	W/22694002-22694682,22694748-22694915,22695002-22695208,22695298-22695474	AT3G61320.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0187 (InterPro:IPR007913); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45870.1); Has 892 Blast hits to 891 proteins in 307 species: Archae - 0; Bacteria - 707; Metazoa - 0; Fungi - 74; Plants - 67; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT3G61320.1p  transcript_id AT3G61320.1  protein_id AT3G61320.1p  transcript_id AT3G61320.1  
At3g61330	chr3:022695993	0.0	C/22695993-22700051	AT3G61330.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.1e-252 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At3g61340	chr3:022701215	0.0	C/22701215-22702447	AT3G61340.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: M germinated pollen stage, LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G31470.1); Has 644 Blast hits to 604 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 642; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G61340.1p  transcript_id AT3G61340.1  protein_id AT3G61340.1p  transcript_id AT3G61340.1  
At3g61350	chr3:022703203	0.0	W/22703203-22703684,22703780-22704374	AT3G61350.1  CDS  gene_syn SKIP4, SKP1 INTERACTING PARTNER 4  gene SKIP4  function Encodes an SKP1 interacting partner (SKIP4).  go_component cellular_component|GO:0005575||ND  go_process response to cold|GO:0009409|16258011|IEP  go_function molecular_function|GO:0003674||ND  product SKIP4 (SKP1 INTERACTING PARTNER 4)  note SKP1 INTERACTING PARTNER 4 (SKIP4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cold; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT1G55270.1); Has 2658 Blast hits to 2187 proteins in 110 species: Archae - 6; Bacteria - 104; Metazoa - 1882; Fungi - 2; Plants - 573; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).  protein_id AT3G61350.1p  transcript_id AT3G61350.1  protein_id AT3G61350.1p  transcript_id AT3G61350.1  
At3g61360	chr3:022704630	0.0	C/22704630-22706126	AT3G61360.1  CDS  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G02420.1); Has 11229 Blast hits to 4504 proteins in 162 species: Archae - 1; Bacteria - 22; Metazoa - 203; Fungi - 245; Plants - 10371; Viruses - 0; Other Eukaryotes - 387 (source: NCBI BLink).  protein_id AT3G61360.1p  transcript_id AT3G61360.1  protein_id AT3G61360.1p  transcript_id AT3G61360.1  
At3g61370	chr3:022707796	0.0	W/22707796-22707864,22707977-22708056,22708146-22708380	AT3G61370.1  CDS  gene_syn F2A19.3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G07940.1); Has 19 Blast hits to 19 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G61370.1p  transcript_id AT3G61370.1  protein_id AT3G61370.1p  transcript_id AT3G61370.1  
At3g61380	chr3:022711141	0.0	C/22711141-22711279,22709966-22711048,22709751-22709872,22709474-22709663,22708769-22709391	AT3G61380.1  CDS  gene_syn F2A19.4  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45900.1); Has 857 Blast hits to 717 proteins in 165 species: Archae - 0; Bacteria - 60; Metazoa - 255; Fungi - 95; Plants - 97; Viruses - 2; Other Eukaryotes - 348 (source: NCBI BLink).  protein_id AT3G61380.1p  transcript_id AT3G61380.1  protein_id AT3G61380.1p  transcript_id AT3G61380.1  
At3g61389	chr3:022716099	0.0	C/22716099-22716218	AT3G61389.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G61389.1p  transcript_id AT3G61389.1  protein_id AT3G61389.1p  transcript_id AT3G61389.1  
At3g61390	chr3:022716418	0.0	W/22716418-22716634,22716726-22716829,22716915-22717036,22717113-22717217,22717332-22717548,22717633-22717956,22718052-22718270	AT3G61390.2  CDS  gene_syn F2A19.1  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  product U-box domain-containing protein  note U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein (TAIR:AT2G45920.1); Has 3975 Blast hits to 2869 proteins in 291 species: Archae - 20; Bacteria - 178; Metazoa - 833; Fungi - 329; Plants - 1063; Viruses - 16; Other Eukaryotes - 1536 (source: NCBI BLink).  protein_id AT3G61390.2p  transcript_id AT3G61390.2  protein_id AT3G61390.2p  transcript_id AT3G61390.2  
At3g61390	chr3:022716418	0.0	W/22716418-22716634,22716726-22716829,22716915-22717036,22717113-22717217,22717332-22717548,22717633-22717989	AT3G61390.1  CDS  gene_syn F2A19.1  product U-box domain-containing protein  note U-box domain-containing protein; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: U-box domain-containing protein (TAIR:AT2G45920.1); Has 2743 Blast hits to 1719 proteins in 250 species: Archae - 20; Bacteria - 160; Metazoa - 651; Fungi - 277; Plants - 269; Viruses - 13; Other Eukaryotes - 1353 (source: NCBI BLink).  protein_id AT3G61390.1p  transcript_id AT3G61390.1  protein_id AT3G61390.1p  transcript_id AT3G61390.1  
At3g61400	chr3:022718956	0.0	W/22718956-22719488,22719658-22719985,22720146-22720397	AT3G61400.1  CDS  gene_syn F2A19.2  function 1-aminocyclopropane-1-carboxylate oxidase-like protein  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function 1-aminocyclopropane-1-carboxylate oxidase activity|GO:0009815|7579161|ISS  product 2-oxoglutarate-dependent dioxygenase, putative  note 2-oxoglutarate-dependent dioxygenase, putative; FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate oxidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase, putative (TAIR:AT1G06620.1); Has 5777 Blast hits to 5765 proteins in 690 species: Archae - 0; Bacteria - 729; Metazoa - 121; Fungi - 582; Plants - 3052; Viruses - 0; Other Eukaryotes - 1293 (source: NCBI BLink).  protein_id AT3G61400.1p  transcript_id AT3G61400.1  protein_id AT3G61400.1p  transcript_id AT3G61400.1  
At3g61410	chr3:022721112	0.0	W/22721112-22721277,22721386-22721507,22721580-22721701,22721794-22721898,22721982-22722255,22722357-22722452	AT3G61410.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: protein kinase family protein / U-box domain-containing protein (TAIR:AT2G45910.1); Has 146 Blast hits to 144 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G61410.1p  transcript_id AT3G61410.1  protein_id AT3G61410.1p  transcript_id AT3G61410.1  
At3g61415	chr3:022725542	0.0	C/22725542-22725577,22724909-22725133,22724628-22724819,22724433-22724543,22724266-22724335,22723723-22723823,22723468-22723649,22723162-22723277,22722962-22722984	AT3G61415.1  CDS  gene_syn ARABIDOPSIS SKP1-LIKE 21, ASK21  gene ASK21  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function protein binding|GO:0005515||IEA  go_component SCF ubiquitin ligase complex|GO:0019005|12970487|ISS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product ASK21 (ARABIDOPSIS SKP1-LIKE 21); protein binding / ubiquitin-protein ligase  note ARABIDOPSIS SKP1-LIKE 21 (ASK21); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: SCF ubiquitin ligase complex; EXPRESSED IN: stem, fruit, inflorescence, root, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: ASK20 (ARABIDOPSIS SKP1-LIKE 20); protein binding / ubiquitin-protein ligase (TAIR:AT2G45950.2); Has 1016 Blast hits to 1014 proteins in 197 species: Archae - 0; Bacteria - 5; Metazoa - 465; Fungi - 103; Plants - 309; Viruses - 11; Other Eukaryotes - 123 (source: NCBI BLink).  protein_id AT3G61415.1p  transcript_id AT3G61415.1  protein_id AT3G61415.1p  transcript_id AT3G61415.1  
At3g61415	chr3:022725542	0.0	C/22725542-22725577,22724909-22725133,22724628-22724819,22724433-22724543,22724266-22724335,22723723-22723823,22723468-22723649,22723162-22723277,22723052-22723068	AT3G61415.2  CDS  gene_syn ARABIDOPSIS SKP1-LIKE 21, ASK21  gene ASK21  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function protein binding|GO:0005515||IEA  go_component SCF ubiquitin ligase complex|GO:0019005|12970487|ISS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product ASK21 (ARABIDOPSIS SKP1-LIKE 21); protein binding / ubiquitin-protein ligase  note ARABIDOPSIS SKP1-LIKE 21 (ASK21); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: SCF ubiquitin ligase complex; EXPRESSED IN: stem, fruit, inflorescence, root, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: ASK20 (ARABIDOPSIS SKP1-LIKE 20); protein binding / ubiquitin-protein ligase (TAIR:AT2G45950.2); Has 1003 Blast hits to 1001 proteins in 194 species: Archae - 2; Bacteria - 2; Metazoa - 458; Fungi - 105; Plants - 310; Viruses - 9; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT3G61415.2p  transcript_id AT3G61415.2  protein_id AT3G61415.2p  transcript_id AT3G61415.2  
At3g61420	chr3:022731695	0.0	C/22731695-22731760,22731518-22731596,22731369-22731430,22731219-22731282,22731001-22731115,22730859-22730934,22730673-22730768,22730544-22730588,22730186-22730242,22729931-22730086,22729763-22729828,22729093-22729216,22728853-22728909,22728606-22728733,22728344-22728517,22728135-22728248,22727917-22727994,22727737-22727784,22727471-22727539,22727235-22727300	AT3G61420.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Kelch related (InterPro:IPR013089), BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: transcription factor-related (TAIR:AT1G55750.1); Has 247 Blast hits to 247 proteins in 115 species: Archae - 1; Bacteria - 0; Metazoa - 116; Fungi - 84; Plants - 26; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT3G61420.1p  transcript_id AT3G61420.1  protein_id AT3G61420.1p  transcript_id AT3G61420.1  
At3g61430	chr3:022733657	0.0	W/22733657-22733984,22734249-22734544,22734783-22734923,22735018-22735113	AT3G61430.1  CDS  gene_syn ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, ATPIP1, PIP1, PIP1;1, PIP1A, PLASMA MEMBRANE INTRINSIC PROTEIN 1, PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, PLASMA MEMBRANE INTRINSIC PROTEIN 1A  gene PIP1A  function a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development.  go_component mitochondrion|GO:0005739|15276431|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component plasma membrane|GO:0005886|7920711|IDA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_process water transport|GO:0006833|7920711|IDA  go_process response to water deprivation|GO:0009414|16235111|IEP  go_process response to salt stress|GO:0009651|16183846|IEP  go_function water channel activity|GO:0015250|7920711|IDA  go_function water channel activity|GO:0015250||ISS  product PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A); water channel  note PLASMA MEMBRANE INTRINSIC PROTEIN 1A (PIP1A); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, response to salt stress, response to water deprivation, water transport; LOCATED IN: mitochondrion, plasma membrane, vacuole, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B); water channel (TAIR:AT2G45960.1); Has 6746 Blast hits to 6723 proteins in 1250 species: Archae - 71; Bacteria - 2612; Metazoa - 1271; Fungi - 290; Plants - 1492; Viruses - 2; Other Eukaryotes - 1008 (source: NCBI BLink).  protein_id AT3G61430.1p  transcript_id AT3G61430.1  protein_id AT3G61430.1p  transcript_id AT3G61430.1  
At3g61430	chr3:022733657	0.0	W/22733657-22733984,22734249-22734544,22734783-22734923,22735018-22735113	AT3G61430.2  CDS  gene_syn ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, ATPIP1, PIP1, PIP1;1, PIP1A, PLASMA MEMBRANE INTRINSIC PROTEIN 1, PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, PLASMA MEMBRANE INTRINSIC PROTEIN 1A  gene PIP1A  function a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development.  go_component membrane|GO:0016020|17432890|IDA  go_component plasma membrane|GO:0005886|7920711|IDA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_process water transport|GO:0006833|7920711|IDA  go_process response to water deprivation|GO:0009414|16235111|IEP  go_process response to salt stress|GO:0009651|16183846|IEP  go_function water channel activity|GO:0015250|7920711|IDA  go_function water channel activity|GO:0015250||ISS  product PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A); water channel  note PLASMA MEMBRANE INTRINSIC PROTEIN 1A (PIP1A); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, response to salt stress, response to water deprivation, water transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B); water channel (TAIR:AT2G45960.1); Has 6746 Blast hits to 6723 proteins in 1250 species: Archae - 71; Bacteria - 2612; Metazoa - 1271; Fungi - 290; Plants - 1492; Viruses - 2; Other Eukaryotes - 1008 (source: NCBI BLink).  protein_id AT3G61430.2p  transcript_id AT3G61430.2  protein_id AT3G61430.2p  transcript_id AT3G61430.2  
At3g61440	chr3:022735885	0.0	W/22735885-22736049,22736179-22736288,22736370-22736427,22736520-22736783,22736869-22737006,22737092-22737143,22737226-22737305,22737384-22737443,22737519-22737599,22737694-22737792	AT3G61440.1  CDS  gene_syn ARATH;BSAS3;1, ATCYSC1, BETA-SUBSTITUTED ALA SYNTHASE 3;1, CYSC1, CYSTEINE SYNTHASE, CYSTEINE SYNTHASE C1  gene CYSC1  function Encodes a cysteine synthase isomer CysC1. The isomer is however less effective in cysteine biosynthesis. It is involved in beta-cyanoalanine biosynthesis, an intermediate of cyanide detoxification pathway.  go_component mitochondrion|GO:0005739|18385124|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component mitochondrion|GO:0005739|11743114|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process cysteine biosynthetic process|GO:0019344|10889265|IDA  go_process cysteine biosynthetic process|GO:0019344||ISS  go_process cyanide metabolic process|GO:0019499|10889265|TAS  go_process detoxification of nitrogen compound|GO:0051410|10889265|TAS  go_function cysteine synthase activity|GO:0004124|10845460|IMP  go_function cysteine synthase activity|GO:0004124|10889265|IDA  go_function cysteine synthase activity|GO:0004124||ISS  go_function L-3-cyanoalanine synthase activity|GO:0050017|10889265|IDA  product CYSC1 (CYSTEINE SYNTHASE C1); L-3-cyanoalanine synthase/ cysteine synthase  note CYSTEINE SYNTHASE C1 (CYSC1); FUNCTIONS IN: cysteine synthase activity, L-3-cyanoalanine synthase activity; INVOLVED IN: cysteine biosynthetic process, detoxification of nitrogen compound, cyanide metabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (InterPro:IPR001216), Cysteine synthase A (InterPro:IPR005859), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Cysteine synthase K/M (InterPro:IPR005856); BEST Arabidopsis thaliana protein match is: OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C); ATP binding / cysteine synthase (TAIR:AT3G59760.1); Has 13860 Blast hits to 13844 proteins in 1494 species: Archae - 226; Bacteria - 7985; Metazoa - 373; Fungi - 414; Plants - 372; Viruses - 0; Other Eukaryotes - 4490 (source: NCBI BLink).  protein_id AT3G61440.1p  transcript_id AT3G61440.1  protein_id AT3G61440.1p  transcript_id AT3G61440.1  
At3g61440	chr3:022736383	0.0	W/22736383-22736427,22736520-22736783,22736869-22737006,22737092-22737143,22737226-22737305,22737384-22737443,22737519-22737599,22737694-22737792	AT3G61440.2  CDS  gene_syn ARATH;BSAS3;1, ATCYSC1, BETA-SUBSTITUTED ALA SYNTHASE 3;1, CYSC1, CYSTEINE SYNTHASE, CYSTEINE SYNTHASE C1  gene CYSC1  function Encodes a cysteine synthase isomer CysC1. The isomer is however less effective in cysteine biosynthesis. It is involved in beta-cyanoalanine biosynthesis, an intermediate of cyanide detoxification pathway.  go_component mitochondrion|GO:0005739|18385124|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component mitochondrion|GO:0005739|11743114|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process cysteine biosynthetic process|GO:0019344|10889265|IDA  go_process cysteine biosynthetic process|GO:0019344||ISS  go_process cyanide metabolic process|GO:0019499|10889265|TAS  go_process detoxification of nitrogen compound|GO:0051410|10889265|TAS  go_function cysteine synthase activity|GO:0004124|10845460|IMP  go_function cysteine synthase activity|GO:0004124|10889265|IDA  go_function cysteine synthase activity|GO:0004124||ISS  go_function L-3-cyanoalanine synthase activity|GO:0050017|10889265|IDA  product CYSC1 (CYSTEINE SYNTHASE C1); L-3-cyanoalanine synthase/ cysteine synthase  note CYSTEINE SYNTHASE C1 (ATCYSC1); FUNCTIONS IN: cysteine synthase activity, L-3-cyanoalanine synthase activity; INVOLVED IN: cysteine biosynthetic process, detoxification of nitrogen compound, cyanide metabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Cysteine synthase A (InterPro:IPR005859); BEST Arabidopsis thaliana protein match is: OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C); ATP binding / cysteine synthase (TAIR:AT3G59760.1); Has 11726 Blast hits to 11718 proteins in 1462 species: Archae - 180; Bacteria - 6685; Metazoa - 350; Fungi - 348; Plants - 354; Viruses - 0; Other Eukaryotes - 3809 (source: NCBI BLink).  protein_id AT3G61440.2p  transcript_id AT3G61440.2  protein_id AT3G61440.2p  transcript_id AT3G61440.2  
At3g61450	chr3:022738455	0.0	W/22738455-22738610,22738693-22738818,22738924-22739083,22739172-22739261,22739352-22739413,22739496-22739540,22739630-22739692,22739774-22739850,22739941-22739953	AT3G61450.1  CDS  gene_syn ATSYP73, SYNTAXIN OF PLANTS 73, SYP73  gene SYP73  function syntaxin of plants 73 (SYP73)  go_component integral to membrane|GO:0016021|11115874|TAS  go_process intracellular protein transport|GO:0006886|11115874|TAS  go_function protein transporter activity|GO:0008565|11115874|TAS  product SYP73 (SYNTAXIN OF PLANTS 73); protein transporter  note SYNTAXIN OF PLANTS 73 (SYP73); FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport; LOCATED IN: integral to membrane; EXPRESSED IN: sperm cell, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012); BEST Arabidopsis thaliana protein match is: SYP71 (SYNTAXIN OF PLANTS 71); protein transporter (TAIR:AT3G09740.1); Has 245 Blast hits to 245 proteins in 81 species: Archae - 3; Bacteria - 6; Metazoa - 51; Fungi - 36; Plants - 70; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT3G61450.1p  transcript_id AT3G61450.1  protein_id AT3G61450.1p  transcript_id AT3G61450.1  
At3g61460	chr3:022741701	0.0	C/22741701-22742213	AT3G61460.1  CDS  gene_syn BRASSINOSTEROID-RESPONSIVE RING-H2, BRH1  gene BRH1  function Encodes a novel ring finger protein and forms an N-terminal hydrophobic domain and a C-terminal RING-H2 signature. Expression is down regulated by brassinolide.  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process response to brassinosteroid stimulus|GO:0009741|12012249|IEP  go_process response to chitin|GO:0010200|12012249|IEP  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product BRH1 (BRASSINOSTEROID-RESPONSIVE RING-H2); protein binding / zinc ion binding  note BRASSINOSTEROID-RESPONSIVE RING-H2 (BRH1); FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: response to chitin, response to brassinosteroid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G41400.1); Has 4513 Blast hits to 4501 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 1509; Fungi - 337; Plants - 1926; Viruses - 25; Other Eukaryotes - 716 (source: NCBI BLink).  protein_id AT3G61460.1p  transcript_id AT3G61460.1  protein_id AT3G61460.1p  transcript_id AT3G61460.1  
At3g61470	chr3:022745736	0.0	W/22745736-22745788,22746113-22746300,22746405-22746919,22747015-22747032	AT3G61470.1  CDS  gene_syn LHCA2, LHCI-680  gene LHCA2  function Encodes a component of the light harvesting antenna complex of photosystem I.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component photosystem I antenna complex|GO:0009782||TAS  go_component light-harvesting complex|GO:0030076||ISS  go_process photosynthesis, light harvesting in photosystem I|GO:0009768||TAS  go_process photosynthesis|GO:0015979||ISS  go_function chlorophyll binding|GO:0016168|8049378|ISS  go_function chlorophyll binding|GO:0016168||ISS  product LHCA2; chlorophyll binding  note LHCA2; FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting in photosystem I, photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: LHCA6; chlorophyll binding (TAIR:AT1G19150.1); Has 1845 Blast hits to 1732 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1586; Viruses - 0; Other Eukaryotes - 257 (source: NCBI BLink).  protein_id AT3G61470.1p  transcript_id AT3G61470.1  protein_id AT3G61470.1p  transcript_id AT3G61470.1  
At3g61480	chr3:022749984	0.0	W/22749984-22750112,22750205-22750312,22750752-22750780,22750893-22750974,22751072-22751484,22751751-22752183,22752272-22752495,22752699-22752894,22753018-22753160,22753232-22753406,22753600-22753653,22753829-22754008,22754104-22754249,22754371-22754553,22754745-22754802,22755025-22755084,22755184-22755225,22755321-22755448,22755546-22755678,22755768-22755845,22756021-22756137,22756229-22756291,22756375-22756476	AT3G61480.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1339 (InterPro:IPR009771), WD40/YVTN repeat-like (InterPro:IPR015943), Quinoprotein amine dehydrogenase, beta chain-like (InterPro:IPR011044); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28350.2); Has 245 Blast hits to 227 proteins in 108 species: Archae - 0; Bacteria - 13; Metazoa - 104; Fungi - 64; Plants - 29; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT3G61480.1p  transcript_id AT3G61480.1  protein_id AT3G61480.1p  transcript_id AT3G61480.1  
At3g61490	chr3:022758439	0.0	W/22758439-22758901,22758986-22759160,22759261-22759331,22759416-22760137	AT3G61490.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT4G23500.1); Has 2372 Blast hits to 2368 proteins in 307 species: Archae - 2; Bacteria - 553; Metazoa - 8; Fungi - 879; Plants - 827; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).  protein_id AT3G61490.1p  transcript_id AT3G61490.1  protein_id AT3G61490.1p  transcript_id AT3G61490.1  
At3g61490	chr3:022758439	0.0	W/22758439-22758901,22758986-22759160,22759261-22759331,22759416-22760137	AT3G61490.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT4G23500.1); Has 2372 Blast hits to 2368 proteins in 307 species: Archae - 2; Bacteria - 553; Metazoa - 8; Fungi - 879; Plants - 827; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).  protein_id AT3G61490.2p  transcript_id AT3G61490.2  protein_id AT3G61490.2p  transcript_id AT3G61490.2  
At3g61500	chr3:022761864	0.0	C/22761864-22762388,22761681-22761783,22761397-22761574,22760628-22760772	AT3G61500.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46080.1).  protein_id AT3G61500.2p  transcript_id AT3G61500.2  protein_id AT3G61500.2p  transcript_id AT3G61500.2  
At3g61500	chr3:022761864	0.0	C/22761864-22762388,22761681-22761783,22761422-22761574,22760692-22760727,22760541-22760569	AT3G61500.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46080.1); Has 62 Blast hits to 62 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G61500.1p  transcript_id AT3G61500.1  protein_id AT3G61500.1p  transcript_id AT3G61500.1  
At3g61510	chr3:022765563	0.0	C/22765563-22765730,22765331-22765462,22764914-22765074,22763495-22764500	AT3G61510.1  CDS  gene_syn 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC SYNTHASE 1, ACS1, ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, AT-ACS1  gene ACS1  function Encodes a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family. The gene is transcriptionally active but enzymatically inactive. The predicted amino-acid sequence of ACS1 is missing the highly conserved tripeptide, Thr-Asn-Pro (TNP), between Ile204 and Ser205. Introduction of TNP into ACS1 restores the ACS activity.  go_component cellular_component|GO:0005575||ND  go_process ethylene biosynthetic process|GO:0009693|8566772|IDA  go_process ethylene biosynthetic process|GO:0009693||ISS  go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847|8566772|IDA  go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847||ISS  product ACS1 (ACC SYNTHASE 1); 1-aminocyclopropane-1-carboxylate synthase  note ACC SYNTHASE 1 (ACS1); FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate synthase activity; INVOLVED IN: ethylene biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: juvenile leaf; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: ACS2; 1-aminocyclopropane-1-carboxylate synthase (TAIR:AT1G01480.1); Has 14037 Blast hits to 14035 proteins in 1596 species: Archae - 495; Bacteria - 8141; Metazoa - 485; Fungi - 386; Plants - 872; Viruses - 0; Other Eukaryotes - 3658 (source: NCBI BLink).  protein_id AT3G61510.1p  transcript_id AT3G61510.1  protein_id AT3G61510.1p  transcript_id AT3G61510.1  
At3g61520	chr3:022768974	0.0	C/22768974-22771274	AT3G61520.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G28460.1); Has 22823 Blast hits to 6045 proteins in 192 species: Archae - 5; Bacteria - 30; Metazoa - 817; Fungi - 560; Plants - 20268; Viruses - 0; Other Eukaryotes - 1143 (source: NCBI BLink).  protein_id AT3G61520.1p  transcript_id AT3G61520.1  protein_id AT3G61520.1p  transcript_id AT3G61520.1  
At3g61530	chr3:022772906	0.0	C/22772906-22773313,22772546-22772752,22772299-22772445,22772045-22772098,22771692-22771940	AT3G61530.1  CDS  gene_syn KETOPANTOATE HYDROXYMETHYLTRANSFERASE, KPHMT2, PANB2  gene PANB2  function Encodes a ketopentoate hydroxymethyltransferase that appears to localize to the mitochondria. This protein is expected to play a role in pantothenate (vitamin B5) biosynthesis.  go_component mitochondrion|GO:0005739|14675432|IDA  go_process pantothenate biosynthetic process|GO:0015940|14675432|IGI  go_process pantothenate biosynthetic process|GO:0015940||ISS  go_function 3-methyl-2-oxobutanoate hydroxymethyltransferase activity|GO:0003864|14675432|IGI  go_function 3-methyl-2-oxobutanoate hydroxymethyltransferase activity|GO:0003864||ISS  product PANB2; 3-methyl-2-oxobutanoate hydroxymethyltransferase  note PANB2; FUNCTIONS IN: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity; INVOLVED IN: pantothenate biosynthetic process; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Ketopantoate hydroxymethyltransferase (InterPro:IPR003700); BEST Arabidopsis thaliana protein match is: KPHMT1 (KETOPANTOATE HYDROXYMETHYLTRANSFERASE 1); 3-methyl-2-oxobutanoate hydroxymethyltransferase (TAIR:AT2G46110.1); Has 5643 Blast hits to 5643 proteins in 1150 species: Archae - 74; Bacteria - 2378; Metazoa - 2; Fungi - 88; Plants - 29; Viruses - 0; Other Eukaryotes - 3072 (source: NCBI BLink).  protein_id AT3G61530.1p  transcript_id AT3G61530.1  protein_id AT3G61530.1p  transcript_id AT3G61530.1  
At3g61530	chr3:022772906	0.0	C/22772906-22773313,22772546-22772752,22772299-22772445,22772045-22772098,22771692-22771940	AT3G61530.2  CDS  gene_syn KETOPANTOATE HYDROXYMETHYLTRANSFERASE, KPHMT2, PANB2  gene PANB2  function Encodes a ketopentoate hydroxymethyltransferase that appears to localize to the mitochondria. This protein is expected to play a role in pantothenate (vitamin B5) biosynthesis.  go_component mitochondrion|GO:0005739|14675432|IDA  go_process pantothenate biosynthetic process|GO:0015940|14675432|IGI  go_process pantothenate biosynthetic process|GO:0015940||ISS  go_function 3-methyl-2-oxobutanoate hydroxymethyltransferase activity|GO:0003864|14675432|IGI  go_function 3-methyl-2-oxobutanoate hydroxymethyltransferase activity|GO:0003864||ISS  product PANB2; 3-methyl-2-oxobutanoate hydroxymethyltransferase  note PANB2; FUNCTIONS IN: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity; INVOLVED IN: pantothenate biosynthetic process; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Ketopantoate hydroxymethyltransferase (InterPro:IPR003700); BEST Arabidopsis thaliana protein match is: KPHMT1 (KETOPANTOATE HYDROXYMETHYLTRANSFERASE 1); 3-methyl-2-oxobutanoate hydroxymethyltransferase (TAIR:AT2G46110.1); Has 5643 Blast hits to 5643 proteins in 1150 species: Archae - 74; Bacteria - 2378; Metazoa - 2; Fungi - 88; Plants - 29; Viruses - 0; Other Eukaryotes - 3072 (source: NCBI BLink).  protein_id AT3G61530.2p  transcript_id AT3G61530.2  protein_id AT3G61530.2p  transcript_id AT3G61530.2  
At3g61540	chr3:022773399	0.0	W/22773399-22773726,22773810-22773946,22774029-22774202,22774292-22774528,22774608-22774708,22774784-22774856,22774943-22775011,22775103-22775210,22775302-22775427,22775505-22775699	AT3G61540.1  CDS  go_component vacuole|GO:0005773|15215502|IDA  go_process proteolysis|GO:0006508||IEA  go_function aminopeptidase activity|GO:0004177||IEA  go_function peptidase activity|GO:0008233||ISS  product peptidase family protein  note peptidase family protein; FUNCTIONS IN: peptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S33, prolyl aminopeptidase (InterPro:IPR002410), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); Has 889 Blast hits to 889 proteins in 258 species: Archae - 0; Bacteria - 554; Metazoa - 4; Fungi - 74; Plants - 28; Viruses - 0; Other Eukaryotes - 229 (source: NCBI BLink).  protein_id AT3G61540.1p  transcript_id AT3G61540.1  protein_id AT3G61540.1p  transcript_id AT3G61540.1  
At3g61545	chr3:022775922	0.0	W/22775922-22775994	AT3G61545.1  tRNA  gene_syn 67318.TRNA-GLU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Glu (anticodon: CTC)  transcript_id AT3G61545.1  
At3g61550	chr3:022776444	0.0	W/22776444-22777082	AT3G61550.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G46160.1); Has 5376 Blast hits to 5357 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 1721; Fungi - 375; Plants - 2522; Viruses - 24; Other Eukaryotes - 734 (source: NCBI BLink).  protein_id AT3G61550.1p  transcript_id AT3G61550.1  protein_id AT3G61550.1p  transcript_id AT3G61550.1  
At3g61560	chr3:022777918	0.0	W/22777918-22778119,22778266-22778446,22778540-22778681,22778838-22778907,22779005-22779171	AT3G61560.1  CDS  go_component plasma membrane|GO:0005886|15060130|IDA  go_component endoplasmic reticulum|GO:0005783||ISS  go_process biological_process|GO:0008150||ND  product reticulon family protein (RTNLB6)  note reticulon family protein (RTNLB6); INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: reticulon family protein (RTNLB5) (TAIR:AT2G46170.1); Has 942 Blast hits to 942 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 640; Fungi - 2; Plants - 279; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT3G61560.1p  transcript_id AT3G61560.1  protein_id AT3G61560.1p  transcript_id AT3G61560.1  
At3g61560	chr3:022777918	0.0	W/22777918-22778119,22778266-22778446,22778575-22778681,22778760-22778897,22779005-22779171	AT3G61560.2  CDS  go_component endoplasmic reticulum|GO:0005783||ISS  go_process biological_process|GO:0008150||ND  product reticulon family protein (RTNLB6)  note reticulon family protein (RTNLB6); INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: reticulon family protein (RTNLB5) (TAIR:AT2G46170.1); Has 267 Blast hits to 267 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 0; Plants - 251; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G61560.2p  transcript_id AT3G61560.2  protein_id AT3G61560.2p  transcript_id AT3G61560.2  
At3g61570	chr3:022783439	0.0	C/22783439-22783642,22783196-22783294,22782989-22783111,22782534-22782647,22782232-22782340,22782088-22782152,22781821-22781988,22781587-22781700,22781338-22781478,22780827-22781123,22780681-22780746,22780394-22780596,22780245-22780299,22779963-22780148,22779637-22779831	AT3G61570.1  CDS  gene_syn GC3, GDAP1, GOLGIN CANDIDATE 3, GRIP-RELATED ARF-BINDING DOMAIN-CONTAINING ARABIDOPSIS PROTEIN 1  gene GDAP1  function This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC3 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (161 aa) portion of the protein.  go_component Golgi apparatus|GO:0005794|18182439|IDA  go_process Golgi organization|GO:0007030|18182439|ISS  go_function protein binding|GO:0005515|17307898|IPI  product GDAP1 (GRIP-RELATED ARF-BINDING DOMAIN-CONTAINING ARABIDOPSIS PROTEIN 1); protein binding  note GRIP-RELATED ARF-BINDING DOMAIN-CONTAINING ARABIDOPSIS PROTEIN 1 (GDAP1); FUNCTIONS IN: protein binding; INVOLVED IN: Golgi organization; LOCATED IN: Golgi apparatus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GRIP (InterPro:IPR000237); BEST Arabidopsis thaliana protein match is: GC4 (golgin candidate 4) (TAIR:AT2G46180.1); Has 101321 Blast hits to 53596 proteins in 1890 species: Archae - 1010; Bacteria - 10909; Metazoa - 50013; Fungi - 7944; Plants - 3325; Viruses - 612; Other Eukaryotes - 27508 (source: NCBI BLink).  protein_id AT3G61570.1p  transcript_id AT3G61570.1  protein_id AT3G61570.1p  transcript_id AT3G61570.1  
At3g61571	chr3:022784021	0.0	C/22784021-22784182	AT3G61571.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G61571.1p  transcript_id AT3G61571.1  protein_id AT3G61571.1p  transcript_id AT3G61571.1  
At3g61580	chr3:022786253	0.0	W/22786253-22787602	AT3G61580.1  CDS  go_process lipid metabolic process|GO:0006629|9786850|IDA  go_function oxidoreductase activity|GO:0016491||ISS  go_function sphingolipid delta-4 desaturase activity|GO:0042284|9786850|IDA  product delta-8 sphingolipid desaturase (SLD1)  note delta-8 sphingolipid desaturase (SLD1); FUNCTIONS IN: oxidoreductase activity, sphingolipid delta-4 desaturase activity; INVOLVED IN: lipid metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1 (InterPro:IPR005804), Cytochrome b5 (InterPro:IPR001199), Fatty acid/sphingolipid desaturase (InterPro:IPR012171); BEST Arabidopsis thaliana protein match is: delta-8 sphingolipid desaturase, putative (TAIR:AT2G46210.1); Has 3797 Blast hits to 3723 proteins in 598 species: Archae - 1; Bacteria - 564; Metazoa - 826; Fungi - 1045; Plants - 622; Viruses - 2; Other Eukaryotes - 737 (source: NCBI BLink).  protein_id AT3G61580.1p  transcript_id AT3G61580.1  protein_id AT3G61580.1p  transcript_id AT3G61580.1  
At3g61590	chr3:022792914	0.0	W/22792914-22794149	AT3G61590.1  CDS  gene_syn F15G16.3, HAWAIIAN SKIRT, HS, HWS  gene HWS  go_component cellular_component|GO:0005575||ND  go_process organ development|GO:0048513|17496113|IMP  go_function ubiquitin-protein ligase activity|GO:0004842|17496113|ISS  product HWS (HAWAIIAN SKIRT); ubiquitin-protein ligase  note HAWAIIAN SKIRT (HWS); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: organ development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 2 (InterPro:IPR011498); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G15710.1); Has 481 Blast hits to 481 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 481; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G61590.1p  transcript_id AT3G61590.1  protein_id AT3G61590.1p  transcript_id AT3G61590.1  
At3g61600	chr3:022795704	0.0	W/22795704-22795962,22796055-22796189,22796285-22796406,22796504-22796567,22796747-22797026,22797128-22797937,22798054-22798069	AT3G61600.2  CDS  gene_syn ATPOB1, F15G16.4, POZ/BTB CONTAINING-PROTEIN ATPOB1  gene ATPOB1  function POZ/BTB containing-protein AtPOB1  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ATPOB1; protein binding  note ATPOB1; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT2G46260.1); Has 3247 Blast hits to 3224 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 3081; Fungi - 0; Plants - 74; Viruses - 10; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT3G61600.2p  transcript_id AT3G61600.2  protein_id AT3G61600.2p  transcript_id AT3G61600.2  
At3g61600	chr3:022795704	0.0	W/22795704-22795962,22796055-22796189,22796285-22796406,22796504-22796567,22796747-22797026,22797128-22797953	AT3G61600.1  CDS  gene_syn ATPOB1, F15G16.4, POZ/BTB CONTAINING-PROTEIN ATPOB1  gene ATPOB1  function POZ/BTB containing-protein AtPOB1  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ATPOB1; protein binding  note ATPOB1; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT2G46260.1); Has 3247 Blast hits to 3224 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 3081; Fungi - 0; Plants - 74; Viruses - 10; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT3G61600.1p  transcript_id AT3G61600.1  protein_id AT3G61600.1p  transcript_id AT3G61600.1  
At3g61610	chr3:022799480	0.0	W/22799480-22799590,22799669-22799743,22799838-22799894,22799979-22800142,22800220-22800354,22800444-22800546,22800641-22800740,22800821-22801029	AT3G61610.1  CDS  gene_syn F15G16.1  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function catalytic activity|GO:0003824||IEA  go_function isomerase activity|GO:0016853||IEA  go_function carbohydrate binding|GO:0030246||IEA  go_component cellular_component|GO:0005575||ND  go_process galactose metabolic process|GO:0006012||ISS  go_function aldose 1-epimerase activity|GO:0004034||ISS  product aldose 1-epimerase family protein  note aldose 1-epimerase family protein; FUNCTIONS IN: carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity; INVOLVED IN: galactose metabolic process, N-terminal protein myristoylation, carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Aldose 1-epimerase (InterPro:IPR008183), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718); BEST Arabidopsis thaliana protein match is: aldose 1-epimerase family protein (TAIR:AT4G23730.1); Has 1254 Blast hits to 1253 proteins in 495 species: Archae - 0; Bacteria - 821; Metazoa - 38; Fungi - 84; Plants - 140; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).  protein_id AT3G61610.1p  transcript_id AT3G61610.1  protein_id AT3G61610.1p  transcript_id AT3G61610.1  
At3g61620	chr3:022802857	0.0	C/22802857-22802910,22802721-22802767,22802568-22802628,22802434-22802475,22802290-22802354,22802124-22802202,22801993-22802029,22801701-22801903,22801527-22801616,22801382-22801429	AT3G61620.1  CDS  gene_syn EXONUCLEASE RRP41, RRP41  gene RRP41  function exonuclease RRP41 (RRP41)  go_process RNA processing|GO:0006396||IEA  go_function 3 -5 -exoribonuclease activity|GO:0000175||IEA  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process RNA processing|GO:0006396||ISS  go_function 3 -5 -exoribonuclease activity|GO:0000175||ISS  go_function RNA binding|GO:0003723||ISS  product RRP41; 3 -5 -exoribonuclease/ RNA binding  note RRP41; FUNCTIONS IN: 3 -5 -exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 2 (InterPro:IPR015847), Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247); BEST Arabidopsis thaliana protein match is: 3  exoribonuclease family domain 1-containing protein (TAIR:AT4G27490.1); Has 8648 Blast hits to 8630 proteins in 1580 species: Archae - 291; Bacteria - 4733; Metazoa - 405; Fungi - 198; Plants - 119; Viruses - 0; Other Eukaryotes - 2902 (source: NCBI BLink).  protein_id AT3G61620.1p  transcript_id AT3G61620.1  protein_id AT3G61620.1p  transcript_id AT3G61620.1  
At3g61620	chr3:022802857	0.0	C/22802857-22802910,22802721-22802767,22802568-22802628,22802434-22802475,22802290-22802354,22802124-22802202,22801993-22802029,22801701-22801903,22801527-22801616,22801382-22801429	AT3G61620.2  CDS  gene_syn EXONUCLEASE RRP41, RRP41  gene RRP41  function exonuclease RRP41 (RRP41)  go_process RNA processing|GO:0006396||IEA  go_function 3 -5 -exoribonuclease activity|GO:0000175||IEA  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process RNA processing|GO:0006396||ISS  go_function 3 -5 -exoribonuclease activity|GO:0000175||ISS  go_function RNA binding|GO:0003723||ISS  product RRP41; 3 -5 -exoribonuclease/ RNA binding  note RRP41; FUNCTIONS IN: 3 -5 -exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 2 (InterPro:IPR015847), Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247); BEST Arabidopsis thaliana protein match is: 3  exoribonuclease family domain 1-containing protein (TAIR:AT4G27490.1); Has 8648 Blast hits to 8630 proteins in 1580 species: Archae - 291; Bacteria - 4733; Metazoa - 405; Fungi - 198; Plants - 119; Viruses - 0; Other Eukaryotes - 2902 (source: NCBI BLink).  protein_id AT3G61620.2p  transcript_id AT3G61620.2  protein_id AT3G61620.2p  transcript_id AT3G61620.2  
At3g61630	chr3:022805274	0.0	W/22805274-22806221	AT3G61630.1  CDS  gene_syn CRF6, CYTOKININ RESPONSE FACTOR 6  gene CRF6  function CRF6 encodes one of the six cytokinin response factors. CRF5 belongs to the AP2/ERF superfamily of the transcriptional factors. CRF proteins rapidly relocalize to the nucleus in response to cytokinin. Analysis of loos-of-function mutants revealed that the CRFs function redundantly to regulate the development of embryos, cotyledons and leaves.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process embryonic development ending in seed dormancy|GO:0009793|16832061|IGI  go_process transcription factor import into nucleus|GO:0042991|16832061|IDA  go_process leaf development|GO:0048366|16832061|IMP  go_process cotyledon development|GO:0048825|16832061|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product CRF6 (CYTOKININ RESPONSE FACTOR 6); DNA binding / transcription factor  note CYTOKININ RESPONSE FACTOR 6 (CRF6); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: embryonic development ending in seed dormancy, cotyledon development, regulation of transcription, DNA-dependent, leaf development, transcription factor import into nucleus; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: CRF5 (CYTOKININ RESPONSE FACTOR 5); DNA binding / transcription factor (TAIR:AT2G46310.1); Has 3705 Blast hits to 3660 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3695; Viruses - 2; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT3G61630.1p  transcript_id AT3G61630.1  protein_id AT3G61630.1p  transcript_id AT3G61630.1  
At3g61640	chr3:022810515	0.0	C/22810515-22810629,22810283-22810392	AT3G61640.1  CDS  gene_syn AGP20, Arabinogalactan protein 20, AtAGP20  gene AGP20  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  product AGP20  note AGP20; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1070 (InterPro:IPR009424); BEST Arabidopsis thaliana protein match is: AGP16 (ARABINOGALACTAN PROTEIN 16) (TAIR:AT2G46330.1); Has 61 Blast hits to 61 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G61640.1p  transcript_id AT3G61640.1  protein_id AT3G61640.1p  transcript_id AT3G61640.1  
At3g61650	chr3:022814883	0.0	C/22814883-22815011,22814395-22814707,22813890-22814290,22813698-22813751,22813519-22813623,22813342-22813416,22813205-22813249,22812941-22813069,22812746-22812850,22812601-22812669	AT3G61650.1  CDS  gene_syn GAMMA-TUBULIN, TUBG1  gene TUBG1  function Required for centrosomal and noncentrosomal microtubule nucleation. Involved in specification of cell identity, such as stomatal patterning. Constitutively expressed throughout plant.  go_component plasma membrane|GO:0005886|17317660|IDA  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_component cytoplasm|GO:0005737|15469496|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component microtubule|GO:0005874|16603653|IDA  go_process cytokinesis|GO:0000910|16603653|IMP  go_process phragmoplast formation|GO:0000914|16698945|IGI  go_process microtubule nucleation|GO:0007020|16603653|IMP  go_process embryo sac development|GO:0009553|16698945|IGI  go_process stomatal complex morphogenesis|GO:0010103|16603653|IMP  go_process microtubule polymerization|GO:0046785|16603653|IMP  go_process leaf development|GO:0048366|16603653|IMP  go_process root hair cell tip growth|GO:0048768|16603653|IMP  go_process cellular localization|GO:0051641|16603653|IMP  go_function structural molecule activity|GO:0005198||ISS  product TUBG1 (GAMMA-TUBULIN); GTP binding / GTPase/ structural molecule  note GAMMA-TUBULIN (TUBG1); FUNCTIONS IN: structural molecule activity, GTP binding, GTPase activity; INVOLVED IN: in 9 processes; LOCATED IN: mitochondrion, microtubule, plasma membrane, cytoplasm; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Gamma tubulin (InterPro:IPR002454), Tubulin, conserved site (InterPro:IPR017975), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase (InterPro:IPR003008), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: GCP2 (GAMMA-TUBULIN COMPLEX PROTEIN 2); GTP binding / GTPase/ structural molecule (TAIR:AT5G05620.1); Has 16352 Blast hits to 16326 proteins in 3549 species: Archae - 15; Bacteria - 34; Metazoa - 3343; Fungi - 9287; Plants - 942; Viruses - 0; Other Eukaryotes - 2731 (source: NCBI BLink).  protein_id AT3G61650.1p  transcript_id AT3G61650.1  protein_id AT3G61650.1p  transcript_id AT3G61650.1  
At3g61660	chr3:022816152	0.0	W/22816152-22816541	AT3G61660.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46375.1); Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G61660.1p  transcript_id AT3G61660.1  protein_id AT3G61660.1p  transcript_id AT3G61660.1  
At3g61670	chr3:022819052	0.0	W/22819052-22819166,22819375-22821292,22821367-22821427,22821506-22821729,22821816-22821870	AT3G61670.1  CDS  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46380.1); Has 197 Blast hits to 162 proteins in 30 species: Archae - 0; Bacteria - 2; Metazoa - 13; Fungi - 15; Plants - 161; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G61670.1p  transcript_id AT3G61670.1  protein_id AT3G61670.1p  transcript_id AT3G61670.1  
At3g61678	chr3:022823243	0.0	C/22823243-22823476	AT3G61678.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G61678.1p  transcript_id AT3G61678.1  protein_id AT3G61678.1p  transcript_id AT3G61678.1  
At3g61680	chr3:022824630	0.0	W/22824630-22825703,22825802-22825861,22826009-22826425,22826528-22826926	AT3G61680.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product lipase class 3 family protein  note lipase class 3 family protein; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: lipase class 3 family protein (TAIR:AT3G62590.1); Has 121 Blast hits to 120 proteins in 36 species: Archae - 0; Bacteria - 11; Metazoa - 2; Fungi - 17; Plants - 59; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT3G61680.1p  transcript_id AT3G61680.1  protein_id AT3G61680.1p  transcript_id AT3G61680.1  
At3g61690	chr3:022828349	0.0	W/22828349-22828594,22828675-22828863,22829000-22829092,22829189-22829371,22829451-22829553,22829648-22829833,22830014-22832346,22832780-22833348,22833468-22833477	AT3G61690.1  CDS  product unknown protein  note unknown protein; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51620.2); Has 622 Blast hits to 403 proteins in 108 species: Archae - 0; Bacteria - 27; Metazoa - 169; Fungi - 63; Plants - 113; Viruses - 0; Other Eukaryotes - 250 (source: NCBI BLink).  protein_id AT3G61690.1p  transcript_id AT3G61690.1  protein_id AT3G61690.1p  transcript_id AT3G61690.1  
At3g61700	chr3:022836414	0.0	W/22836414-22836428,22836838-22836993,22837140-22837245,22837516-22837704,22837815-22837974,22838053-22838354,22838436-22838540,22838742-22838803	AT3G61700.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46420.1); Has 156 Blast hits to 156 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT3G61700.2p  transcript_id AT3G61700.2  protein_id AT3G61700.2p  transcript_id AT3G61700.2  
At3g61700	chr3:022836414	0.0	W/22836414-22836428,22836838-22836993,22837140-22837245,22837516-22837704,22837815-22837974,22838053-22838354,22838451-22838540,22838742-22838803	AT3G61700.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46420.1); Has 155 Blast hits to 155 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT3G61700.1p  transcript_id AT3G61700.1  protein_id AT3G61700.1p  transcript_id AT3G61700.1  
At3g61710	chr3:022841522	0.0	C/22841522-22841815,22841237-22841407,22841015-22841139,22840873-22840921,22840450-22840608,22840211-22840369	AT3G61710.3  CDS  gene_syn ATATG6, F21F14.6  go_process autophagy|GO:0006914||IEA  go_process autophagy|GO:0006914||ISS  go_function molecular_function|GO:0003674||ND  product autophagy protein Apg6 family  note autophagy protein Apg6 family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: autophagy; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy protein 6 (InterPro:IPR007243); Has 677 Blast hits to 652 proteins in 210 species: Archae - 7; Bacteria - 75; Metazoa - 268; Fungi - 101; Plants - 57; Viruses - 12; Other Eukaryotes - 157 (source: NCBI BLink).  protein_id AT3G61710.3p  transcript_id AT3G61710.3  protein_id AT3G61710.3p  transcript_id AT3G61710.3  
At3g61710	chr3:022842103	0.0	C/22842103-22842253,22841522-22841868,22841237-22841407,22841015-22841139,22840873-22840921,22840450-22840608,22840211-22840369	AT3G61710.2  CDS  gene_syn ATATG6, F21F14.6  go_process autophagy|GO:0006914||IEA  go_process autophagy|GO:0006914||ISS  go_function molecular_function|GO:0003674||ND  product autophagy protein Apg6 family  note autophagy protein Apg6 family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: autophagy; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy protein 6 (InterPro:IPR007243); Has 695 Blast hits to 666 proteins in 211 species: Archae - 7; Bacteria - 75; Metazoa - 275; Fungi - 103; Plants - 60; Viruses - 12; Other Eukaryotes - 163 (source: NCBI BLink).  protein_id AT3G61710.2p  transcript_id AT3G61710.2  protein_id AT3G61710.2p  transcript_id AT3G61710.2  
At3g61710	chr3:022842103	0.0	C/22842103-22842253,22841522-22841868,22841237-22841407,22841015-22841139,22840873-22840921,22840450-22840608,22840284-22840369,22840108-22840179,22839829-22839978,22839477-22839720	AT3G61710.1  CDS  gene_syn ATATG6, F21F14.6  go_process autophagy|GO:0006914||IEA  go_process autophagy|GO:0006914||ISS  go_function molecular_function|GO:0003674||ND  product autophagy protein Apg6 family  note autophagy protein Apg6 family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: autophagy; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy protein 6 (InterPro:IPR007243); Has 715 Blast hits to 685 proteins in 216 species: Archae - 7; Bacteria - 81; Metazoa - 283; Fungi - 103; Plants - 61; Viruses - 12; Other Eukaryotes - 168 (source: NCBI BLink).  protein_id AT3G61710.1p  transcript_id AT3G61710.1  protein_id AT3G61710.1p  transcript_id AT3G61710.1  
At3g61715	chr3:022842522	0.0	W/22842522-22842592	AT3G61715.1  tRNA  gene_syn 67319.TRNA-GLY-1, 67320.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: GCC)  transcript_id AT3G61715.1  
At3g61720	chr3:022843011	0.0	C/22843011-22845398	AT3G61720.1  CDS  gene_syn F21F14.8  go_process tryptophan biosynthetic process|GO:0000162||IEA  product C2 domain-containing protein  note C2 domain-containing protein; INVOLVED IN: tryptophan biosynthetic process; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal, plant (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT5G03435.1); Has 817 Blast hits to 749 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 312; Fungi - 55; Plants - 390; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT3G61720.1p  transcript_id AT3G61720.1  protein_id AT3G61720.1p  transcript_id AT3G61720.1  
At3g61721	chr3:022845746	0.0	W/22845746-22846569	AT3G61721.1  pseudogenic_transcript  pseudo  function pseudogene of protein binding / zinc ion binding/RING-H2 finger protein  
At3g61723	chr3:022846709	0.0	C/22846709-22846786,22846468-22846611	AT3G61723.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: SDG14 (SET DOMAIN PROTEIN 14); DNA binding / protein binding / zinc ion binding (TAIR:AT3G61740.2); Has 20 Blast hits to 20 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G61723.1p  transcript_id AT3G61723.1  protein_id AT3G61723.1p  transcript_id AT3G61723.1  
At3g61730	chr3:022850216	0.0	C/22850216-22850475,22849613-22849812,22849490-22849534,22849192-22849341,22849069-22849116,22848800-22848970,22848600-22848707,22848427-22848509	AT3G61730.1  CDS  gene_syn F21F14.11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36000.1); Has 23 Blast hits to 23 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G61730.1p  transcript_id AT3G61730.1  protein_id AT3G61730.1p  transcript_id AT3G61730.1  
At3g61740	chr3:022855823	0.0	C/22855823-22856548,22855684-22855739,22855431-22855599,22855042-22855161,22854901-22854969,22854743-22854811,22854559-22854650,22854330-22854422,22853992-22854127,22853812-22853884,22853626-22853725,22853410-22853534,22853076-22853221,22852872-22852976,22852665-22852729,22852358-22852583,22852008-22852247,22851835-22851924,22851653-22851739,22851492-22851566,22851316-22851419,22851133-22851223	AT3G61740.1  CDS  gene_syn ATX3, F21F14.13, SDG14, SET DOMAIN PROTEIN 14  gene SDG14  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product SDG14 (SET DOMAIN PROTEIN 14); DNA binding / protein binding / zinc ion binding  note SET DOMAIN PROTEIN 14 (SDG14); FUNCTIONS IN: protein binding, DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Post-SET zinc-binding region (InterPro:IPR003616), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: SDG29 (SET DOMAIN GROUP 29); DNA binding / protein binding / zinc ion binding (TAIR:AT5G53430.1); Has 5960 Blast hits to 5700 proteins in 364 species: Archae - 2; Bacteria - 316; Metazoa - 2982; Fungi - 581; Plants - 821; Viruses - 0; Other Eukaryotes - 1258 (source: NCBI BLink).  protein_id AT3G61740.1p  transcript_id AT3G61740.1  protein_id AT3G61740.1p  transcript_id AT3G61740.1  
At3g61740	chr3:022855823	0.0	C/22855823-22856548,22855684-22855739,22855431-22855599,22855042-22855161,22854901-22854969,22854743-22854811,22854559-22854650,22854330-22854422,22853992-22854127,22853812-22853884,22853626-22853725,22853410-22853534,22853076-22853221,22852872-22852976,22852665-22852729,22852358-22852583,22852164-22852250,22852008-22852052,22851835-22851924,22851653-22851739,22851492-22851566,22851316-22851419,22851133-22851223	AT3G61740.2  CDS  gene_syn ATX3, F21F14.13, SDG14, SET DOMAIN PROTEIN 14  gene SDG14  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product SDG14 (SET DOMAIN PROTEIN 14); DNA binding / protein binding / zinc ion binding  note ATX3; FUNCTIONS IN: protein binding, DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Post-SET zinc-binding region (InterPro:IPR003616), PWWP (InterPro:IPR000313), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: SDG29 (SET DOMAIN GROUP 29); DNA binding / protein binding / zinc ion binding (TAIR:AT5G53430.1); Has 5944 Blast hits to 5697 proteins in 364 species: Archae - 2; Bacteria - 316; Metazoa - 2986; Fungi - 574; Plants - 808; Viruses - 0; Other Eukaryotes - 1258 (source: NCBI BLink).  protein_id AT3G61740.2p  transcript_id AT3G61740.2  protein_id AT3G61740.2p  transcript_id AT3G61740.2  
At3g61750	chr3:022859048	0.0	C/22859048-22859254,22858571-22858970,22857897-22858486	AT3G61750.1  CDS  gene_syn F21F14.14  go_process histidine catabolic process|GO:0006548||IEA  go_function dopamine beta-monooxygenase activity|GO:0004500||IEA  go_component membrane|GO:0016020|10080694|ISS  product auxin-responsive protein -related  note auxin-responsive protein -related; FUNCTIONS IN: dopamine beta-monooxygenase activity; INVOLVED IN: histidine catabolic process; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: DOMON related (InterPro:IPR005018), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593), DOMON (InterPro:IPR013050); BEST Arabidopsis thaliana protein match is: membrane protein, putative (TAIR:AT3G07570.1); Has 392 Blast hits to 392 proteins in 79 species: Archae - 2; Bacteria - 0; Metazoa - 98; Fungi - 70; Plants - 213; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G61750.1p  transcript_id AT3G61750.1  protein_id AT3G61750.1p  transcript_id AT3G61750.1  
At3g61755	chr3:022860127	0.0	W/22860127-22860199	AT3G61755.1  tRNA  gene_syn 67319.TRNA-ALA-1, 67320.TRNA-ALA-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: CGC)  transcript_id AT3G61755.1  
At3g61760	chr3:022863964	0.0	C/22863964-22864092,22863659-22863722,22863476-22863580,22863262-22863366,22863022-22863072,22862867-22862928,22862650-22862740,22862357-22862421,22861971-22862165,22861766-22861885,22861594-22861664,22861237-22861513,22860774-22861142,22860546-22860674	AT3G61760.1  CDS  gene_syn ADL1B, ARABIDOPSIS DYNAMIN-LIKE 1B, F21F14.15  gene ADL1B  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTPase activity|GO:0003924||ISS  go_function GTP binding|GO:0005525||ISS  product ADL1B (ARABIDOPSIS DYNAMIN-LIKE 1B); GTP binding / GTPase  note ARABIDOPSIS DYNAMIN-LIKE 1B (ADL1B); FUNCTIONS IN: GTP binding, GTPase activity; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130), Dynamin, GTPase region (InterPro:IPR001401), Dynamin central region (InterPro:IPR000375); BEST Arabidopsis thaliana protein match is: ADL1 (ARABIDOPSIS DYNAMIN-LIKE PROTEIN); GTP binding / GTPase/ protein binding (TAIR:AT5G42080.1); Has 2113 Blast hits to 2032 proteins in 247 species: Archae - 2; Bacteria - 35; Metazoa - 940; Fungi - 519; Plants - 329; Viruses - 0; Other Eukaryotes - 288 (source: NCBI BLink).  protein_id AT3G61760.1p  transcript_id AT3G61760.1  protein_id AT3G61760.1p  transcript_id AT3G61760.1  
At3g61763	chr3:022864277	0.0	C/22864277-22864372	AT3G61763.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G61763.1p  transcript_id AT3G61763.1  protein_id AT3G61763.1p  transcript_id AT3G61763.1  
At3g61770	chr3:022864635	0.0	W/22864635-22865327,22866087-22866248	AT3G61770.1  CDS  gene_syn F21F14.5  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase/vanadium-dependent haloperoxidase related (InterPro:IPR003832); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67600.1); Has 613 Blast hits to 613 proteins in 199 species: Archae - 0; Bacteria - 356; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 153 (source: NCBI BLink).  protein_id AT3G61770.1p  transcript_id AT3G61770.1  protein_id AT3G61770.1p  transcript_id AT3G61770.1  
At3g61780	chr3:022869203	0.0	C/22869203-22871462,22868465-22869084,22868169-22868381,22867814-22868086	AT3G61780.1  CDS  gene_syn F21F14.1, emb1703, embryo defective 1703  gene emb1703  go_component chloroplast|GO:0009507||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product emb1703 (embryo defective 1703)  note embryo defective 1703 (emb1703); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28400.1); Has 938 Blast hits to 771 proteins in 142 species: Archae - 6; Bacteria - 53; Metazoa - 252; Fungi - 95; Plants - 52; Viruses - 2; Other Eukaryotes - 478 (source: NCBI BLink).  protein_id AT3G61780.1p  transcript_id AT3G61780.1  protein_id AT3G61780.1p  transcript_id AT3G61780.1  
At3g61790	chr3:022873316	0.0	C/22873316-22873543,22872646-22873032,22871974-22872339	AT3G61790.1  CDS  gene_syn F21F14.2  go_component nucleus|GO:0005634||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_process multicellular organismal development|GO:0007275||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_process multicellular organismal development|GO:0007275||ISS  product seven in absentia (SINA) family protein  note seven in absentia (SINA) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: multicellular organismal development, ubiquitin-dependent protein catabolic process, protein ubiquitination; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), TRAF-like (InterPro:IPR008974), Seven in absentia protein, TRAF-like domain (InterPro:IPR018121), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, SIAH-type (InterPro:IPR013010), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven in absentia protein (InterPro:IPR004162), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: seven in absentia (SINA) family protein (TAIR:AT4G27880.1); Has 1422 Blast hits to 1414 proteins in 637 species: Archae - 0; Bacteria - 0; Metazoa - 1099; Fungi - 9; Plants - 250; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT3G61790.1p  transcript_id AT3G61790.1  protein_id AT3G61790.1p  transcript_id AT3G61790.1  
At3g61800	chr3:022876661	0.0	C/22876661-22876846,22874723-22876531	AT3G61800.1  CDS  gene_syn F21F14.3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2043 (InterPro:IPR018610), ENTH/VHS (InterPro:IPR008942); Has 252 Blast hits to 225 proteins in 76 species: Archae - 2; Bacteria - 18; Metazoa - 106; Fungi - 14; Plants - 26; Viruses - 2; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT3G61800.1p  transcript_id AT3G61800.1  protein_id AT3G61800.1p  transcript_id AT3G61800.1  
At3g61810	chr3:022877168	0.0	W/22877168-22877267,22877359-22877412,22877496-22878469	AT3G61810.1  CDS  gene_syn F21F14.9  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT4G29360.2); Has 1421 Blast hits to 1413 proteins in 128 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 38; Plants - 1372; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G61810.1p  transcript_id AT3G61810.1  protein_id AT3G61810.1p  transcript_id AT3G61810.1  
At3g61820	chr3:022880074	0.0	C/22880074-22881525	AT3G61820.1  CDS  gene_syn F21F14.7  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT1G01300.1); Has 2621 Blast hits to 2600 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 816; Fungi - 529; Plants - 1157; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT3G61820.1p  transcript_id AT3G61820.1  protein_id AT3G61820.1p  transcript_id AT3G61820.1  
At3g61825	chr3:022881807	0.0	W/22881807-22881878	AT3G61825.1  tRNA  gene_syn 67319.TRNA-GLN-1, 67320.TRNA-GLN-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gln (anticodon: CTG)  transcript_id AT3G61825.1  
At3g61826	chr3:022886631	0.0	C/22886631-22886723	AT3G61826.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G61826.1p  transcript_id AT3G61826.1  protein_id AT3G61826.1p  transcript_id AT3G61826.1  
At3g61827	chr3:022886842	0.0	C/22886842-22887027	AT3G61827.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G61827.1p  transcript_id AT3G61827.1  protein_id AT3G61827.1p  transcript_id AT3G61827.1  
At3g61829	chr3:022887191	0.0	C/22887191-22887322	AT3G61829.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G61829.1p  transcript_id AT3G61829.1  protein_id AT3G61829.1p  transcript_id AT3G61829.1  
At3g61830	chr3:022888171	0.0	W/22888171-22888216,22888488-22888603,22888687-22888785,22888856-22888912,22889004-22889156,22889235-22889319,22889407-22889497,22889577-22889741,22889832-22889945,22890018-22890090,22890179-22890658,22890740-22890927,22891038-22891179	AT3G61830.1  CDS  gene_syn ARF18, AUXIN RESPONSE FACTOR 18, F21F14.12  gene ARF18  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process response to hormone stimulus|GO:0009725||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product ARF18 (AUXIN RESPONSE FACTOR 18); transcription factor  note AUXIN RESPONSE FACTOR 18 (ARF18); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to hormone stimulus, regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: ARF11 (AUXIN RESPONSE FACTOR 11); transcription factor (TAIR:AT2G46530.1); Has 1526 Blast hits to 1303 proteins in 66 species: Archae - 2; Bacteria - 4; Metazoa - 20; Fungi - 2; Plants - 1497; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G61830.1p  transcript_id AT3G61830.1  protein_id AT3G61830.1p  transcript_id AT3G61830.1  
At3g61840	chr3:022892546	0.0	W/22892546-22893073	AT3G61840.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46535.1); Has 22 Blast hits to 22 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G61840.1p  transcript_id AT3G61840.1  protein_id AT3G61840.1p  transcript_id AT3G61840.1  
At3g61850	chr3:022895495	0.0	W/22895495-22895518,22896200-22896704,22896789-22897150	AT3G61850.1  CDS  gene_syn BBFA, DAG1, dof affecting germination 1  gene DAG1  function Zinc finger transcription factor of the Dof family involved in the control of seed germination.  go_component nucleus|GO:0005634|16581911|IDA  go_process response to red or far red light|GO:0009639|11842145|IMP  go_process seed germination|GO:0009845|10640273|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product DAG1 (dof affecting germination 1); DNA binding / transcription factor  note dof affecting germination 1 (DAG1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to red or far red light, seed germination; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: DAG2 (DOF AFFECTING GERMINATION 2); DNA binding / transcription factor (TAIR:AT2G46590.2); Has 697 Blast hits to 678 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 0; Plants - 617; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT3G61850.1p  transcript_id AT3G61850.1  protein_id AT3G61850.1p  transcript_id AT3G61850.1  
At3g61850	chr3:022895495	0.0	W/22895495-22895518,22896200-22897150	AT3G61850.4  CDS  gene_syn BBFA, DAG1, dof affecting germination 1  gene DAG1  function Zinc finger transcription factor of the Dof family involved in the control of seed germination.  go_component nucleus|GO:0005634|16581911|IDA  go_process response to red or far red light|GO:0009639|11842145|IMP  go_process seed germination|GO:0009845|10640273|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product DAG1 (dof affecting germination 1); DNA binding / transcription factor  note dof affecting germination 1 (DAG1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to red or far red light, seed germination; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: DAG2 (DOF AFFECTING GERMINATION 2); DNA binding / transcription factor (TAIR:AT2G46590.2); Has 734 Blast hits to 705 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 44; Fungi - 0; Plants - 620; Viruses - 2; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT3G61850.4p  transcript_id AT3G61850.4  protein_id AT3G61850.4p  transcript_id AT3G61850.4  
At3g61850	chr3:022896212	0.0	W/22896212-22896704,22896789-22897150	AT3G61850.2  CDS  gene_syn BBFA, DAG1, dof affecting germination 1  gene DAG1  function Zinc finger transcription factor of the Dof family involved in the control of seed germination.  go_component nucleus|GO:0005634|16581911|IDA  go_process response to red or far red light|GO:0009639|11842145|IMP  go_process seed germination|GO:0009845|10640273|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product DAG1 (dof affecting germination 1); DNA binding / transcription factor  note dof affecting germination 1 (DAG1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to red or far red light, seed germination; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: DAG2 (DOF AFFECTING GERMINATION 2); DNA binding / transcription factor (TAIR:AT2G46590.2); Has 693 Blast hits to 674 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 0; Plants - 617; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT3G61850.2p  transcript_id AT3G61850.2  protein_id AT3G61850.2p  transcript_id AT3G61850.2  
At3g61850	chr3:022896212	0.0	W/22896212-22896704,22896789-22897150	AT3G61850.3  CDS  gene_syn BBFA, DAG1, dof affecting germination 1  gene DAG1  function Zinc finger transcription factor of the Dof family involved in the control of seed germination.  go_component nucleus|GO:0005634|16581911|IDA  go_process response to red or far red light|GO:0009639|11842145|IMP  go_process seed germination|GO:0009845|10640273|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product DAG1 (dof affecting germination 1); DNA binding / transcription factor  note dof affecting germination 1 (DAG1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to red or far red light, seed germination; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: DAG2 (DOF AFFECTING GERMINATION 2); DNA binding / transcription factor (TAIR:AT2G46590.2); Has 693 Blast hits to 674 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 0; Plants - 617; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT3G61850.3p  transcript_id AT3G61850.3  protein_id AT3G61850.3p  transcript_id AT3G61850.3  
At3g61860	chr3:022902054	0.0	C/22902054-22902159,22901143-22901255,22900829-22901058,22900427-22900741,22900311-22900341	AT3G61860.1  CDS  gene_syn ATRSP31, RSP31, arginine/serine-rich splicing factor 31  gene RSP31  function encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component spliceosome|GO:0005681|8989882|TAS  go_component nuclear speck|GO:0016607|15133128|IDA  go_component nuclear speck|GO:0016607|15686520|IDA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|8989882|IDA  go_process RNA splicing|GO:0008380|16807317|NAS  go_function RNA binding|GO:0003723||ISS  product RSP31; RNA binding / nucleic acid binding / nucleotide binding  note RSP31; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck, spliceosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: arginine/serine-rich splicing factor, putative (TAIR:AT2G46610.1); Has 10723 Blast hits to 8793 proteins in 333 species: Archae - 2; Bacteria - 112; Metazoa - 7161; Fungi - 1221; Plants - 1320; Viruses - 8; Other Eukaryotes - 899 (source: NCBI BLink).  protein_id AT3G61860.1p  transcript_id AT3G61860.1  protein_id AT3G61860.1p  transcript_id AT3G61860.1  
At3g61870	chr3:022902702	0.0	W/22902702-22902911,22903007-22903436,22903717-22903895	AT3G61870.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast inner membrane|GO:0009706|12177442|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 137 Blast hits to 137 proteins in 53 species: Archae - 0; Bacteria - 85; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT3G61870.1p  transcript_id AT3G61870.1  protein_id AT3G61870.1p  transcript_id AT3G61870.1  
At3g61870	chr3:022902702	0.0	W/22902702-22902911,22903007-22903561	AT3G61870.2  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast inner membrane|GO:0009706|12177442|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast inner membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 127 Blast hits to 127 proteins in 52 species: Archae - 0; Bacteria - 81; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT3G61870.2p  transcript_id AT3G61870.2  protein_id AT3G61870.2p  transcript_id AT3G61870.2  
At3g61880	chr3:022906916	0.0	C/22906916-22907890,22906114-22906743	AT3G61880.1  CDS  gene_syn CYP78A9, CYTOCHROME P450 78A9  gene CYP78A9  function Encodes a cytochrome p450 monooxygenase. Overexpression of this gene allows fruit growth independently of fertilization. The gene is normally expressed only in floral organs(during the Arabidopsis stage 14 flower) and in the funiculus at anthesis.  go_component endomembrane system|GO:0012505||IEA  go_process fruit development|GO:0010154|11006330|IMP  go_function monooxygenase activity|GO:0004497|11006330|ISS  go_function oxygen binding|GO:0019825||ISS  product CYP78A9 (CYTOCHROME P450 78A9); monooxygenase/ oxygen binding  note CYTOCHROME P450 78A9 (CYP78A9); FUNCTIONS IN: monooxygenase activity, oxygen binding; INVOLVED IN: fruit development; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, flower development stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP78A6; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT2G46660.1); Has 22917 Blast hits to 22842 proteins in 1249 species: Archae - 21; Bacteria - 2037; Metazoa - 10180; Fungi - 4277; Plants - 5577; Viruses - 3; Other Eukaryotes - 822 (source: NCBI BLink).  protein_id AT3G61880.1p  transcript_id AT3G61880.1  protein_id AT3G61880.1p  transcript_id AT3G61880.1  
At3g61890	chr3:022914886	0.0	C/22914886-22915239,22914346-22914699	AT3G61890.1  CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX 12, ATHB-12, ATHB12  gene ATHB-12  function Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. Loss of function mutant has abnormally shaped leaves and stems.  go_component nucleus|GO:0005634|15369784|IDA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to osmotic stress|GO:0006970|9617808|IEP  go_process response to water deprivation|GO:0009414|18552355|IEP  go_process response to salt stress|GO:0009651|15369784|IEP  go_process response to salt stress|GO:0009651|15369784|IGI  go_process response to abscisic acid stimulus|GO:0009737|15369784|IEP  go_process response to abscisic acid stimulus|GO:0009737|15604708|IMP  go_process response to abscisic acid stimulus|GO:0009737|9617808|IEP  go_process positive regulation of transcription|GO:0045941|16055682|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|16055682|IDA  product ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX 12); transcription activator/ transcription factor  note ARABIDOPSIS THALIANA HOMEOBOX 12 (ATHB-12); FUNCTIONS IN: transcription factor activity, transcription activator activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ATHB-7 (ARABIDOPSIS THALIANA HOMEOBOX 7); transcription activator/ transcription factor (TAIR:AT2G46680.1); Has 8453 Blast hits to 8432 proteins in 455 species: Archae - 0; Bacteria - 16; Metazoa - 6711; Fungi - 130; Plants - 1425; Viruses - 4; Other Eukaryotes - 167 (source: NCBI BLink).  protein_id AT3G61890.1p  transcript_id AT3G61890.1  protein_id AT3G61890.1p  transcript_id AT3G61890.1  
At3g61897	chr3:022922210	0.0	W/22922210-22922321	AT3G61897.1  miRNA  gene_syn MICRORNA 166, MICRORNA 166B, MIR166, MIR166B  gene MIR166B  function Encodes a microRNA that targets several HD-ZIPIII family members including PHV, PHB, REV, ATHB-8, and ATHB-15. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCGGACCAGGCUUCAUUCCCC  go_process gene silencing by miRNA|GO:0035195|15851028|IDA  product MIR166B (MICRORNA 166B); miRNA  transcript_id AT3G61897.1  
At3g61898	chr3:022922700	0.0	W/22922700-22922870	AT3G61898.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G61898.1p  transcript_id AT3G61898.1  protein_id AT3G61898.1p  transcript_id AT3G61898.1  
At3g61900	chr3:022925813	0.0	W/22925813-22926115,22926189-22926223,22926307-22926379	AT3G61900.1  CDS  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT2G46690.1); Has 716 Blast hits to 706 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 715; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G61900.1p  transcript_id AT3G61900.1  protein_id AT3G61900.1p  transcript_id AT3G61900.1  
At3g61910	chr3:022930236	0.0	C/22930236-22930407,22929193-22930025	AT3G61910.1  CDS  gene_syn ANAC066, ARABIDOPSIS NAC DOMAIN PROTEIN 66, NAC SECONDARY WALL THICKENING PROMOTING FACTOR2, NST2  gene ANAC066  function NAC transcription factor NST2. NST1 and NST2 are redundant in regulating secondary wall thickening in anther walls. NST2 promoter was particularly strong in anther tissue.  go_component membrane|GO:0016020|17432890|IDA  go_process multicellular organismal development|GO:0007275||ISS  go_process secondary cell wall biogenesis|GO:0009834|16214898|IMP  go_process anther dehiscence|GO:0009901|16214898|IGI  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|18952777|IDA  product ANAC066 (ARABIDOPSIS NAC DOMAIN PROTEIN 66); transcription activator/ transcription factor  note ARABIDOPSIS NAC DOMAIN PROTEIN 66 (ANAC066); FUNCTIONS IN: transcription factor activity, transcription activator activity; INVOLVED IN: multicellular organismal development, anther dehiscence, secondary cell wall biogenesis; LOCATED IN: membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: EMB2301 (EMBRYO DEFECTIVE 2301); transcription activator/ transcription factor (TAIR:AT2G46770.1); Has 1560 Blast hits to 1558 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1560; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G61910.1p  transcript_id AT3G61910.1  protein_id AT3G61910.1p  transcript_id AT3G61910.1  
At3g61920	chr3:022932638	0.0	C/22932638-22933201	AT3G61920.1  CDS  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot, hypocotyl, root; Has 25 Blast hits to 25 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G61920.1p  transcript_id AT3G61920.1  protein_id AT3G61920.1p  transcript_id AT3G61920.1  
At3g61930	chr3:022935596	0.0	W/22935596-22935925	AT3G61930.1  CDS  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G61930.1p  transcript_id AT3G61930.1  protein_id AT3G61930.1p  transcript_id AT3G61930.1  
At3g61940	chr3:022937445	0.0	W/22937445-22938449	AT3G61940.1  CDS  gene_syn ATMTPA1, MTPA1  gene MTPA1  function member of Zinc transporter (ZAT) family  go_component membrane|GO:0016020||IEA  go_process cation transport|GO:0006812||IEA  go_process zinc ion transport|GO:0006829||ISS  go_function zinc ion transmembrane transporter activity|GO:0005385||ISS  go_function inorganic anion transmembrane transporter activity|GO:0015103||ISS  go_function efflux transmembrane transporter activity|GO:0015562||ISS  product MTPA1; efflux transmembrane transporter/ inorganic anion transmembrane transporter/ zinc ion transmembrane transporter  note MTPA1; FUNCTIONS IN: zinc ion transmembrane transporter activity, efflux transmembrane transporter activity, inorganic anion transmembrane transporter activity; INVOLVED IN: zinc ion transport, cation transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: ZAT (ZINC TRANSPORTER OF ARABIDOPSIS THALIANA); inorganic anion transmembrane transporter/ metal ion transmembrane transporter/ zinc ion transmembrane transporter (TAIR:AT2G46800.2); Has 5000 Blast hits to 4563 proteins in 1174 species: Archae - 92; Bacteria - 2774; Metazoa - 1165; Fungi - 355; Plants - 143; Viruses - 3; Other Eukaryotes - 468 (source: NCBI BLink).  protein_id AT3G61940.1p  transcript_id AT3G61940.1  protein_id AT3G61940.1p  transcript_id AT3G61940.1  
At3g61947	chr3:022939271	0.0	C/22939271-22939387	AT3G61947.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G61947.1p  transcript_id AT3G61947.1  protein_id AT3G61947.1p  transcript_id AT3G61947.1  
At3g61950	chr3:022939661	0.0	W/22939661-22939693,22940111-22940704,22940777-22941145,22941252-22941332	AT3G61950.1  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT2G46810.1); Has 917 Blast hits to 905 proteins in 97 species: Archae - 0; Bacteria - 0; Metazoa - 78; Fungi - 31; Plants - 799; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G61950.1p  transcript_id AT3G61950.1  protein_id AT3G61950.1p  transcript_id AT3G61950.1  
At3g61950	chr3:022940231	0.0	W/22940231-22940704,22940777-22941145,22941252-22941332	AT3G61950.2  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT2G46810.1); Has 897 Blast hits to 885 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 60; Fungi - 31; Plants - 797; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G61950.2p  transcript_id AT3G61950.2  protein_id AT3G61950.2p  transcript_id AT3G61950.2  
At3g61960	chr3:022944766	0.0	C/22944766-22944996,22944551-22944668,22944387-22944445,22944237-22944301,22944041-22944134,22943874-22943954,22943665-22943776,22943511-22943565,22943190-22943419,22942786-22943102,22942458-22942716,22942311-22942381,22941966-22942154	AT3G61960.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G37840.1); Has 96538 Blast hits to 94555 proteins in 3142 species: Archae - 71; Bacteria - 8635; Metazoa - 41764; Fungi - 8770; Plants - 18509; Viruses - 485; Other Eukaryotes - 18304 (source: NCBI BLink).  protein_id AT3G61960.1p  transcript_id AT3G61960.1  protein_id AT3G61960.1p  transcript_id AT3G61960.1  
At3g61960	chr3:022944766	0.0	C/22944766-22944996,22944551-22944668,22944387-22944445,22944237-22944301,22944041-22944134,22943874-22943954,22943665-22943776,22943511-22943565,22943190-22943419,22942786-22943102,22942513-22942716,22941966-22942154	AT3G61960.2  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G53930.2); Has 96537 Blast hits to 94555 proteins in 3142 species: Archae - 71; Bacteria - 8633; Metazoa - 41764; Fungi - 8769; Plants - 18508; Viruses - 485; Other Eukaryotes - 18307 (source: NCBI BLink).  protein_id AT3G61960.2p  transcript_id AT3G61960.2  protein_id AT3G61960.2p  transcript_id AT3G61960.2  
At3g61962	chr3:022947108	0.0	C/22947108-22947233	AT3G61962.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G61962.1p  transcript_id AT3G61962.1  protein_id AT3G61962.1p  transcript_id AT3G61962.1  
At3g61970	chr3:022951829	0.0	W/22951829-22952728	AT3G61970.1  CDS  gene_syn NGA2, NGATHA2  gene NGA2  go_component cellular_component|GO:0005575||ND  go_process flower development|GO:0009908|16603651|IMP  go_process leaf development|GO:0048366|16603651|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product NGA2 (NGATHA2); transcription factor  note NGATHA2 (NGA2); FUNCTIONS IN: transcription factor activity; INVOLVED IN: flower development, leaf development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: NGA1 (NGATHA1); transcription factor (TAIR:AT2G46870.1); Has 732 Blast hits to 730 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 732; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G61970.1p  transcript_id AT3G61970.1  protein_id AT3G61970.1p  transcript_id AT3G61970.1  
At3g61980	chr3:022956344	0.0	C/22956344-22956697	AT3G61980.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function serine-type endopeptidase inhibitor activity|GO:0004867||ISS  product serine protease inhibitor, Kazal-type family protein  note serine protease inhibitor, Kazal-type family protein; FUNCTIONS IN: serine-type endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I1, Kazal (InterPro:IPR002350); BEST Arabidopsis thaliana protein match is: serine protease inhibitor, Kazal-type family protein (TAIR:AT4G01575.1); Has 23 Blast hits to 23 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G61980.1p  transcript_id AT3G61980.1  protein_id AT3G61980.1p  transcript_id AT3G61980.1  
At3g61990	chr3:022958617	0.0	C/22958617-22958910,22958482-22958526,22958293-22958376,22958069-22958194,22957900-22957967,22957756-22957825,22957609-22957674,22957456-22957533,22957318-22957359	AT3G61990.1  CDS  go_function O-methyltransferase activity|GO:0008171||IEA  go_component cytosol|GO:0005829|9484457|TAS  product O-methyltransferase family 3 protein  note O-methyltransferase family 3 protein; FUNCTIONS IN: O-methyltransferase activity; LOCATED IN: cytosol; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: O-methyltransferase, family 3 (InterPro:IPR002935); BEST Arabidopsis thaliana protein match is: O-methyltransferase family 3 protein (TAIR:AT3G62000.1); Has 3681 Blast hits to 3679 proteins in 779 species: Archae - 35; Bacteria - 1538; Metazoa - 234; Fungi - 104; Plants - 444; Viruses - 0; Other Eukaryotes - 1326 (source: NCBI BLink).  protein_id AT3G61990.1p  transcript_id AT3G61990.1  protein_id AT3G61990.1p  transcript_id AT3G61990.1  
At3g62000	chr3:022960932	0.0	C/22960932-22961180,22960803-22960856,22960611-22960694,22960390-22960515,22960049-22960116,22959890-22959959,22959752-22959817,22959587-22959664,22959441-22959482	AT3G62000.1  CDS  go_function O-methyltransferase activity|GO:0008171||IEA  go_component cytosol|GO:0005829|9484457|TAS  product O-methyltransferase family 3 protein  note O-methyltransferase family 3 protein; FUNCTIONS IN: O-methyltransferase activity; LOCATED IN: cytosol; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: O-methyltransferase, family 3 (InterPro:IPR002935); BEST Arabidopsis thaliana protein match is: O-methyltransferase family 3 protein (TAIR:AT3G61990.1); Has 3642 Blast hits to 3640 proteins in 775 species: Archae - 31; Bacteria - 1513; Metazoa - 236; Fungi - 112; Plants - 446; Viruses - 0; Other Eukaryotes - 1304 (source: NCBI BLink).  protein_id AT3G62000.1p  transcript_id AT3G62000.1  protein_id AT3G62000.1p  transcript_id AT3G62000.1  
At3g62010	chr3:022964945	0.0	W/22964945-22965094,22965418-22965549,22965663-22965734,22965892-22965962,22966047-22966146,22966234-22966332,22966473-22966599,22966995-22967134,22967220-22967279,22967359-22967594,22967795-22968224,22968352-22968675,22968789-22969394,22969482-22969655,22969750-22969983,22970055-22970338,22970430-22970699,22970790-22970912,22971017-22971149	AT3G62010.1  CDS  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 392 Blast hits to 144 proteins in 61 species: Archae - 0; Bacteria - 83; Metazoa - 177; Fungi - 40; Plants - 41; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT3G62010.1p  transcript_id AT3G62010.1  protein_id AT3G62010.1p  transcript_id AT3G62010.1  
At3g62020	chr3:022971443	0.0	C/22971443-22972018	AT3G62020.2  CDS  gene_syn GERMIN-LIKE PROTEIN 10, GLP10  gene GLP10  function germin-like protein (GLP10)  go_component cell wall|GO:0005618|15593128|IDA  go_function manganese ion binding|GO:0030145||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process biological_process|GO:0008150||ND  product GLP10 (GERMIN-LIKE PROTEIN 10); manganese ion binding / nutrient reservoir  note GERMIN-LIKE PROTEIN 10 (GLP10); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: GL22 (GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 2 PRECURSOR.); manganese ion binding / nutrient reservoir (TAIR:AT1G02335.1); Has 963 Blast hits to 962 proteins in 116 species: Archae - 0; Bacteria - 65; Metazoa - 0; Fungi - 30; Plants - 838; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT3G62020.2p  transcript_id AT3G62020.2  protein_id AT3G62020.2p  transcript_id AT3G62020.2  
At3g62020	chr3:022972081	0.0	C/22972081-22972192,22971443-22971993	AT3G62020.1  CDS  gene_syn GERMIN-LIKE PROTEIN 10, GLP10  gene GLP10  function germin-like protein (GLP10)  go_component cell wall|GO:0005618|15593128|IDA  go_function manganese ion binding|GO:0030145||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process biological_process|GO:0008150||ND  product GLP10 (GERMIN-LIKE PROTEIN 10); manganese ion binding / nutrient reservoir  note GERMIN-LIKE PROTEIN 10 (GLP10); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: GL22 (GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 2 PRECURSOR.); manganese ion binding / nutrient reservoir (TAIR:AT1G02335.1); Has 964 Blast hits to 963 proteins in 116 species: Archae - 0; Bacteria - 65; Metazoa - 0; Fungi - 30; Plants - 839; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT3G62020.1p  transcript_id AT3G62020.1  protein_id AT3G62020.1p  transcript_id AT3G62020.1  
At3g62030	chr3:022973004	0.0	W/22973004-22973092,22973275-22973295,22973659-22973761,22973956-22974144,22974222-22974375,22974463-22974551,22974643-22974697,22974791-22974876,22974984-22975139	AT3G62030.2  CDS  gene_syn PEPTIDYLPROLYL ISOMERASE ROC4, ROC4, T17J13.1, rotamase CyP 4  gene ROC4  function nuclear-encoded chloroplast stromal cyclophilin CYP20-3 (also known as ROC4). Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|8132503|IDA  go_process protein folding|GO:0006457||ISS  go_process response to oxidative stress|GO:0006979|18845687|IMP  go_process signal transduction|GO:0007165|9426607|ISS  go_process response to light intensity|GO:0009642|18845687|IMP  go_process response to salt stress|GO:0009651|18845687|IMP  go_process response to abscisic acid stimulus|GO:0009737|18768909|IEP  go_process response to mannitol stimulus|GO:0010555|18845687|IMP  go_process cysteine biosynthetic process|GO:0019344|18845687|IMP  go_process protein targeting to chloroplast|GO:0045036|8132503|IDA  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755|8132503|IDA  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4)  note rotamase CyP 4 (ROC4); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: in 9 processes; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein (TAIR:AT5G13120.1).  protein_id AT3G62030.2p  transcript_id AT3G62030.2  protein_id AT3G62030.2p  transcript_id AT3G62030.2  
At3g62030	chr3:022973708	0.0	W/22973708-22973761,22973956-22974144,22974222-22974375,22974463-22974551,22974643-22974697,22974791-22974876,22974984-22975139	AT3G62030.1  CDS  gene_syn PEPTIDYLPROLYL ISOMERASE ROC4, ROC4, T17J13.1, rotamase CyP 4  gene ROC4  function nuclear-encoded chloroplast stromal cyclophilin CYP20-3 (also known as ROC4). Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_component chloroplast stroma|GO:0009570|8132503|IDA  go_process protein folding|GO:0006457||ISS  go_process response to oxidative stress|GO:0006979|18845687|IMP  go_process signal transduction|GO:0007165|9426607|ISS  go_process response to light intensity|GO:0009642|18845687|IMP  go_process response to salt stress|GO:0009651|18845687|IMP  go_process response to abscisic acid stimulus|GO:0009737|18768909|IEP  go_process response to mannitol stimulus|GO:0010555|18845687|IMP  go_process cysteine biosynthetic process|GO:0019344|18845687|IMP  go_process protein targeting to chloroplast|GO:0045036|8132503|IDA  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755|8132503|IDA  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4)  note rotamase CyP 4 (ROC4); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: in 10 processes; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein (TAIR:AT5G13120.1); Has 11561 Blast hits to 11540 proteins in 1527 species: Archae - 82; Bacteria - 3676; Metazoa - 2390; Fungi - 960; Plants - 748; Viruses - 4; Other Eukaryotes - 3701 (source: NCBI BLink).  protein_id AT3G62030.1p  transcript_id AT3G62030.1  protein_id AT3G62030.1p  transcript_id AT3G62030.1  
At3g62040	chr3:022976479	0.0	C/22976479-22976518,22976309-22976374,22976116-22976213,22975913-22976038,22975624-22975821,22975328-22975549	AT3G62040.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity|GO:0016787||ISS  product catalytic/ hydrolase  note catalytic/ hydrolase; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Pyrimidine 5-nucleotidase (InterPro:IPR010237), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: haloacid dehalogenase-like hydrolase family protein (TAIR:AT5G59490.1); Has 1808 Blast hits to 1808 proteins in 312 species: Archae - 22; Bacteria - 419; Metazoa - 0; Fungi - 97; Plants - 109; Viruses - 0; Other Eukaryotes - 1161 (source: NCBI BLink).  protein_id AT3G62040.1p  transcript_id AT3G62040.1  protein_id AT3G62040.1p  transcript_id AT3G62040.1  
At3g62050	chr3:022978305	0.0	W/22978305-22978335,22978418-22978615,22978700-22978944	AT3G62050.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: EDA32 (embryo sac development arrest 32) (TAIR:AT3G62210.1); Has 114 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 8; Plants - 103; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G62050.1p  transcript_id AT3G62050.1  protein_id AT3G62050.1p  transcript_id AT3G62050.1  
At3g62060	chr3:022980123	0.0	W/22980123-22980327,22980602-22980684,22980824-22980953,22981042-22981115,22981225-22981311,22981416-22981540,22981633-22981693,22981806-22981859,22981974-22982051,22982154-22982259,22982371-22982516,22982624-22982734	AT3G62060.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function carboxylesterase activity|GO:0004091||ISS  product pectinacetylesterase family protein  note pectinacetylesterase family protein; FUNCTIONS IN: carboxylesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinacetylesterase (InterPro:IPR004963); BEST Arabidopsis thaliana protein match is: pectinacetylesterase, putative (TAIR:AT2G46930.1); Has 391 Blast hits to 385 proteins in 77 species: Archae - 0; Bacteria - 34; Metazoa - 114; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT3G62060.1p  transcript_id AT3G62060.1  protein_id AT3G62060.1p  transcript_id AT3G62060.1  
At3g62070	chr3:022983882	0.0	C/22983882-22984482,22983710-22983795	AT3G62070.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46940.1); Has 73 Blast hits to 72 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G62070.1p  transcript_id AT3G62070.1  protein_id AT3G62070.1p  transcript_id AT3G62070.1  
At3g62080	chr3:022986191	0.0	W/22986191-22986304,22986380-22986574,22986667-22986726,22986806-22986973,22987079-22987261,22987506-22987636,22987790-22987958,22988061-22988190,22988279-22988517	AT3G62080.2  CDS  go_process protein transport|GO:0015031||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product SNF7 family protein  note SNF7 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); Has 955 Blast hits to 933 proteins in 178 species: Archae - 16; Bacteria - 52; Metazoa - 556; Fungi - 89; Plants - 91; Viruses - 1; Other Eukaryotes - 150 (source: NCBI BLink).  protein_id AT3G62080.2p  transcript_id AT3G62080.2  protein_id AT3G62080.2p  transcript_id AT3G62080.2  
At3g62080	chr3:022986383	0.0	W/22986383-22986574,22986667-22986726,22986806-22986973,22987079-22987261,22987506-22987636,22987790-22987958,22988061-22988190,22988279-22988517	AT3G62080.1  CDS  go_process protein transport|GO:0015031||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product SNF7 family protein  note SNF7 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); Has 942 Blast hits to 925 proteins in 178 species: Archae - 16; Bacteria - 52; Metazoa - 555; Fungi - 86; Plants - 90; Viruses - 1; Other Eukaryotes - 142 (source: NCBI BLink).  protein_id AT3G62080.1p  transcript_id AT3G62080.1  protein_id AT3G62080.1p  transcript_id AT3G62080.1  
At3g62090	chr3:022990061	0.0	C/22990061-22990495,22989870-22989977,22989726-22989791,22989558-22989623,22989097-22989462	AT3G62090.1  CDS  gene_syn PHYTOCHROME INTERACTING FACTOR 3-LIKE 2, PHYTOCHROME-INTERACTING FACTOR 6, PIF6, PIL2  gene PIL2  function encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family.  go_component nucleus|GO:0005634||IEA  go_process red or far red light signaling pathway|GO:0010017|17965713|IEP  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700|12826627|ISS  go_function protein binding|GO:0005515|12826627|IPI  product PIL2 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 2); protein binding / transcription factor  note PHYTOCHROME INTERACTING FACTOR 3-LIKE 2 (PIL2); FUNCTIONS IN: protein binding, transcription factor activity; INVOLVED IN: red or far red light signaling pathway; LOCATED IN: nucleus; EXPRESSED IN: stem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: PIL1 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 1); transcription factor (TAIR:AT2G46970.1); Has 836 Blast hits to 836 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 833; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G62090.1p  transcript_id AT3G62090.1  protein_id AT3G62090.1p  transcript_id AT3G62090.1  
At3g62090	chr3:022990061	0.0	C/22990061-22990546,22989870-22989977,22989726-22989791,22989558-22989623,22989097-22989462	AT3G62090.2  CDS  gene_syn PHYTOCHROME INTERACTING FACTOR 3-LIKE 2, PHYTOCHROME-INTERACTING FACTOR 6, PIF6, PIL2  gene PIL2  function encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family.  go_component nucleus|GO:0005634||IEA  go_process red or far red light signaling pathway|GO:0010017|17965713|IEP  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700|12826627|ISS  go_function protein binding|GO:0005515|12826627|IPI  product PIL2 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 2); protein binding / transcription factor  note PHYTOCHROME INTERACTING FACTOR 3-LIKE 2 (PIL2); FUNCTIONS IN: protein binding, transcription factor activity; INVOLVED IN: red or far red light signaling pathway; LOCATED IN: nucleus; EXPRESSED IN: stem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: PIL1 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 1); transcription factor (TAIR:AT2G46970.1); Has 836 Blast hits to 836 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 833; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G62090.2p  transcript_id AT3G62090.2  protein_id AT3G62090.2p  transcript_id AT3G62090.2  
At3g62097	chr3:022994271	0.0	C/22994271-22994381	AT3G62097.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G62097.1p  transcript_id AT3G62097.1  protein_id AT3G62097.1p  transcript_id AT3G62097.1  
At3g62100	chr3:022995835	0.0	W/22995835-22996201,22996332-22996428,22996539-22996593	AT3G62100.1  CDS  gene_syn IAA30, INDOLE-3-ACETIC ACID INDUCIBLE 30  gene IAA30  function Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA30 lacks the conserved degron (domain II) found in many family members. IAA30 transcripts are induced by auxin treatment and accumulate preferentially in the quiescent center cells of the root meristem. Overexpression of IAA30 leads to defects in gravitropism, root development, root meristem maintenance, and cotyledon vascular development.  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process gravitropism|GO:0009630|18298415|IMP  go_process response to auxin stimulus|GO:0009733|12036262|TAS  go_process response to auxin stimulus|GO:0009733|18298415|IEP  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_process root development|GO:0048364|18298415|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product IAA30 (INDOLE-3-ACETIC ACID INDUCIBLE 30); transcription factor  note INDOLE-3-ACETIC ACID INDUCIBLE 30 (IAA30); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to cyclopentenone, response to auxin stimulus, gravitropism, root development; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA20 (INDOLE-3-ACETIC ACID INDUCIBLE 20); transcription factor (TAIR:AT2G46990.1); Has 1032 Blast hits to 1032 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1031; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G62100.1p  transcript_id AT3G62100.1  protein_id AT3G62100.1p  transcript_id AT3G62100.1  
At3g62110	chr3:022999486	0.0	C/22999486-22999503,22998730-22999047,22998525-22998645,22998262-22998436,22998105-22998175,22997313-22998025	AT3G62110.1  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: response to cyclopentenone, carbohydrate metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT4G33440.1); Has 2594 Blast hits to 2590 proteins in 344 species: Archae - 2; Bacteria - 575; Metazoa - 8; Fungi - 1060; Plants - 840; Viruses - 2; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT3G62110.1p  transcript_id AT3G62110.1  protein_id AT3G62110.1p  transcript_id AT3G62110.1  
At3g62120	chr3:023003658	0.0	C/23003658-23003849,23003477-23003566,23003256-23003372,23002996-23003183,23002755-23002821,23002500-23002622,23002267-23002419,23001903-23002187,23001573-23001791,23001386-23001479,23001227-23001291	AT3G62120.1  CDS  go_component membrane|GO:0016020|17432890|IDA  go_process translation|GO:0006412||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_process prolyl-tRNA aminoacylation|GO:0006433||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function proline-tRNA ligase activity|GO:0004827||IEA  go_function ATP binding|GO:0005524||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||ISS  go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS  go_function ATP binding|GO:0005524||ISS  product tRNA synthetase class II (G, H, P and S) family protein  note tRNA synthetase class II (G, H, P and S) family protein; FUNCTIONS IN: proline-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: prolyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (G, H, P and S), conserved region (InterPro:IPR002314), Prolyl-tRNA synthetase, class IIa, prokaryotic-type (InterPro:IPR004499), Prolyl-tRNA synthetase, class II, C-terminal (InterPro:IPR016061), Anticodon-binding (InterPro:IPR004154), Prolyl-tRNA synthetase, class II (InterPro:IPR017449), Prolyl-tRNA synthetase, class IIa, conserved region (InterPro:IPR002316), Aminoacyl-tRNA synthetase, class II, conserved region (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: OVA6 (OVULE ABORTION 6); ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / proline-tRNA ligase (TAIR:AT5G52520.1); Has 5872 Blast hits to 5731 proteins in 1483 species: Archae - 181; Bacteria - 3502; Metazoa - 187; Fungi - 122; Plants - 56; Viruses - 0; Other Eukaryotes - 1824 (source: NCBI BLink).  protein_id AT3G62120.1p  transcript_id AT3G62120.1  protein_id AT3G62120.1p  transcript_id AT3G62120.1  
At3g62120	chr3:023003658	0.0	C/23003658-23003849,23003477-23003566,23003256-23003372,23002996-23003183,23002755-23002821,23002500-23002622,23002267-23002419,23001903-23002187,23001573-23001791,23001386-23001479,23001227-23001291	AT3G62120.2  CDS  go_component membrane|GO:0016020|17432890|IDA  go_process translation|GO:0006412||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_process prolyl-tRNA aminoacylation|GO:0006433||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function proline-tRNA ligase activity|GO:0004827||IEA  go_function ATP binding|GO:0005524||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||ISS  go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS  go_function ATP binding|GO:0005524||ISS  product tRNA synthetase class II (G, H, P and S) family protein  note tRNA synthetase class II (G, H, P and S) family protein; FUNCTIONS IN: proline-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: prolyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (G, H, P and S), conserved region (InterPro:IPR002314), Prolyl-tRNA synthetase, class IIa, prokaryotic-type (InterPro:IPR004499), Prolyl-tRNA synthetase, class II, C-terminal (InterPro:IPR016061), Anticodon-binding (InterPro:IPR004154), Prolyl-tRNA synthetase, class II (InterPro:IPR017449), Prolyl-tRNA synthetase, class IIa, conserved region (InterPro:IPR002316), Aminoacyl-tRNA synthetase, class II, conserved region (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: OVA6 (OVULE ABORTION 6); ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / proline-tRNA ligase (TAIR:AT5G52520.1); Has 5872 Blast hits to 5731 proteins in 1483 species: Archae - 181; Bacteria - 3502; Metazoa - 187; Fungi - 122; Plants - 56; Viruses - 0; Other Eukaryotes - 1824 (source: NCBI BLink).  protein_id AT3G62120.2p  transcript_id AT3G62120.2  protein_id AT3G62120.2p  transcript_id AT3G62120.2  
At3g62130	chr3:023004994	0.0	W/23004994-23006358	AT3G62130.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_component cellular_component|GO:0005575||ND  product epimerase-related  note epimerase-related; FUNCTIONS IN: pyridoxal phosphate binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase, class V/Cysteine desulfurase (InterPro:IPR000192), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: catalytic/ pyridoxal phosphate binding (TAIR:AT5G26600.2); Has 2894 Blast hits to 2894 proteins in 687 species: Archae - 60; Bacteria - 1379; Metazoa - 26; Fungi - 139; Plants - 61; Viruses - 0; Other Eukaryotes - 1229 (source: NCBI BLink).  protein_id AT3G62130.1p  transcript_id AT3G62130.1  protein_id AT3G62130.1p  transcript_id AT3G62130.1  
At3g62140	chr3:023007277	0.0	W/23007277-23007333,23007428-23007502,23007592-23007649,23007824-23007879,23008039-23008101,23008187-23008264,23008369-23008626	AT3G62140.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; Has 331 Blast hits to 328 proteins in 104 species: Archae - 0; Bacteria - 6; Metazoa - 181; Fungi - 52; Plants - 23; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT3G62140.1p  transcript_id AT3G62140.1  protein_id AT3G62140.1p  transcript_id AT3G62140.1  
At3g62150	chr3:023013211	0.0	C/23013211-23013579,23013065-23013119,23012795-23012970,23012262-23012722,23011657-23012182,23011283-23011556,23010339-23011189,23009991-23010245,23009642-23009905,23009262-23009555,23008755-23009108	AT3G62150.1  CDS  gene_syn P-GLYCOPROTEIN 21, PGP21  gene PGP21  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process transport|GO:0006810||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product PGP21 (P-GLYCOPROTEIN 21); ATPase, coupled to transmembrane movement of substances  note P-GLYCOPROTEIN 21 (PGP21); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABCB4 (ATP BINDING CASSETTE SUBFAMILY B4); ATPase, coupled to transmembrane movement of substances / xenobiotic-transporting ATPase (TAIR:AT2G47000.1); Has 503411 Blast hits to 234839 proteins in 2688 species: Archae - 8850; Bacteria - 337440; Metazoa - 15433; Fungi - 8384; Plants - 4837; Viruses - 46; Other Eukaryotes - 128421 (source: NCBI BLink).  protein_id AT3G62150.1p  transcript_id AT3G62150.1  protein_id AT3G62150.1p  transcript_id AT3G62150.1  
At3g62160	chr3:023015398	0.0	C/23015398-23015808,23014333-23015208	AT3G62160.1  CDS  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT1G28680.1); Has 1217 Blast hits to 1209 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 7; Plants - 1209; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G62160.1p  transcript_id AT3G62160.1  protein_id AT3G62160.1p  transcript_id AT3G62160.1  
At3g62170	chr3:023017260	0.0	C/23017260-23018337,23016495-23017183	AT3G62170.1  CDS  gene_syn VGDH2, Vanguard 1 homolog 2  gene VGDH2  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product VGDH2 (Vanguard 1 homolog 2); enzyme inhibitor/ pectinesterase  note Vanguard 1 homolog 2 (VGDH2); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: VGD1 (VANGUARD1); enzyme inhibitor/ pectinesterase (TAIR:AT2G47040.1); Has 1450 Blast hits to 1406 proteins in 267 species: Archae - 0; Bacteria - 416; Metazoa - 1; Fungi - 138; Plants - 894; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G62170.1p  transcript_id AT3G62170.1  protein_id AT3G62170.1p  transcript_id AT3G62170.1  
At3g62180	chr3:023019832	0.0	C/23019832-23020479	AT3G62180.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT2G47050.1); Has 50 Blast hits to 49 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G62180.1p  transcript_id AT3G62180.1  protein_id AT3G62180.1p  transcript_id AT3G62180.1  
At3g62190	chr3:023021146	0.0	W/23021146-23021211,23021480-23021572,23021659-23021689,23022037-23022080	AT3G62190.2  CDS  go_function heat shock protein binding|GO:0031072||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623).  protein_id AT3G62190.2p  transcript_id AT3G62190.2  protein_id AT3G62190.2p  transcript_id AT3G62190.2  
At3g62190	chr3:023021146	0.0	W/23021146-23021211,23021480-23021572,23021659-23021689,23022227-23022259,23022335-23022473,23022560-23022614	AT3G62190.1  CDS  go_function heat shock protein binding|GO:0031072||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); Has 1308 Blast hits to 1308 proteins in 278 species: Archae - 4; Bacteria - 421; Metazoa - 154; Fungi - 51; Plants - 64; Viruses - 0; Other Eukaryotes - 614 (source: NCBI BLink).  protein_id AT3G62190.1p  transcript_id AT3G62190.1  protein_id AT3G62190.1p  transcript_id AT3G62190.1  
At3g62200	chr3:023025377	0.0	C/23025377-23025671,23023740-23025258,23023437-23023644	AT3G62200.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: EDA32 (embryo sac development arrest 32) (TAIR:AT3G62210.1); Has 3380 Blast hits to 2820 proteins in 272 species: Archae - 0; Bacteria - 93; Metazoa - 1555; Fungi - 720; Plants - 473; Viruses - 42; Other Eukaryotes - 497 (source: NCBI BLink).  protein_id AT3G62200.1p  transcript_id AT3G62200.1  protein_id AT3G62200.1p  transcript_id AT3G62200.1  
At3g62210	chr3:023027837	0.0	C/23027837-23028113,23026910-23027472	AT3G62210.1  CDS  gene_syn EDA32, embryo sac development arrest 32  gene EDA32  go_component cellular_component|GO:0005575||ND  go_process polar nucleus fusion|GO:0010197|15634699|IMP  product EDA32 (embryo sac development arrest 32)  note embryo sac development arrest 32 (EDA32); INVOLVED IN: polar nucleus fusion; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62200.1); Has 207 Blast hits to 203 proteins in 38 species: Archae - 0; Bacteria - 7; Metazoa - 54; Fungi - 16; Plants - 128; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G62210.1p  transcript_id AT3G62210.1  protein_id AT3G62210.1p  transcript_id AT3G62210.1  
At3g62220	chr3:023030780	0.0	C/23030780-23030864,23030447-23030697,23030233-23030359,23029878-23030151,23029668-23029800,23029492-23029578,23029276-23029404	AT3G62220.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product serine/threonine protein kinase, putative  note serine/threonine protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase, putative (TAIR:AT2G47060.2); Has 82520 Blast hits to 81517 proteins in 3289 species: Archae - 50; Bacteria - 7570; Metazoa - 36328; Fungi - 6173; Plants - 18156; Viruses - 365; Other Eukaryotes - 13878 (source: NCBI BLink).  protein_id AT3G62220.1p  transcript_id AT3G62220.1  protein_id AT3G62220.1p  transcript_id AT3G62220.1  
At3g62230	chr3:023031589	0.0	W/23031589-23032974	AT3G62230.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G54820.1); Has 315 Blast hits to 307 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 315; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G62230.1p  transcript_id AT3G62230.1  protein_id AT3G62230.1p  transcript_id AT3G62230.1  
At3g62240	chr3:023036486	0.0	C/23036486-23036653,23035988-23036296,23035676-23035884,23035545-23035593,23035377-23035466,23035227-23035289,23033592-23035142	AT3G62240.1  CDS  go_component intracellular|GO:0005622||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: nucleic acid binding / protein binding / zinc ion binding (TAIR:AT2G47090.1); Has 3224 Blast hits to 1336 proteins in 208 species: Archae - 0; Bacteria - 156; Metazoa - 809; Fungi - 335; Plants - 89; Viruses - 4; Other Eukaryotes - 1831 (source: NCBI BLink).  protein_id AT3G62240.1p  transcript_id AT3G62240.1  protein_id AT3G62240.1p  transcript_id AT3G62240.1  
At3g62245	chr3:023036880	0.0	W/23036880-23036952	AT3G62245.1  tRNA  gene_syn 67321.TRNA-ALA-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: TGC)  transcript_id AT3G62245.1  
At3g62250	chr3:023037138	0.0	W/23037138-23037611	AT3G62250.1  CDS  gene_syn UBQ5, ubiquitin 5  gene UBQ5  go_process translation|GO:0006412||IEA  go_process protein modification process|GO:0006464||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process protein ubiquitination during ubiquitin-dependent protein catabolic process|GO:0042787||ISS  go_function protein binding|GO:0005515||ISS  product UBQ5 (ubiquitin 5); protein binding / structural constituent of ribosome  note ubiquitin 5 (UBQ5); FUNCTIONS IN: protein binding, structural constituent of ribosome; INVOLVED IN: protein ubiquitination during ubiquitin-dependent protein catabolic process, protein modification process, translation; LOCATED IN: cytosolic small ribosomal subunit; CONTAINS InterPro DOMAIN/s: Ribosomal protein S27a (InterPro:IPR002906), Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: UBQ6; protein binding (TAIR:AT2G47110.1); Has 9355 Blast hits to 5604 proteins in 655 species: Archae - 78; Bacteria - 7; Metazoa - 4233; Fungi - 952; Plants - 1981; Viruses - 176; Other Eukaryotes - 1928 (source: NCBI BLink).  protein_id AT3G62250.1p  transcript_id AT3G62250.1  protein_id AT3G62250.1p  transcript_id AT3G62250.1  
At3g62260	chr3:023040224	0.0	C/23040224-23040391,23039657-23039842,23039348-23039583,23038516-23039077	AT3G62260.1  CDS  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: catalytic/ protein serine/threonine phosphatase (TAIR:AT1G48040.1); Has 4767 Blast hits to 4744 proteins in 462 species: Archae - 3; Bacteria - 523; Metazoa - 1381; Fungi - 534; Plants - 1284; Viruses - 9; Other Eukaryotes - 1033 (source: NCBI BLink).  protein_id AT3G62260.1p  transcript_id AT3G62260.1  protein_id AT3G62260.1p  transcript_id AT3G62260.1  
At3g62260	chr3:023040224	0.0	C/23040224-23040391,23039657-23039845,23039348-23039583,23038516-23039077	AT3G62260.2  CDS  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: catalytic/ protein serine/threonine phosphatase (TAIR:AT1G48040.1); Has 4773 Blast hits to 4750 proteins in 462 species: Archae - 3; Bacteria - 529; Metazoa - 1381; Fungi - 534; Plants - 1284; Viruses - 9; Other Eukaryotes - 1033 (source: NCBI BLink).  protein_id AT3G62260.2p  transcript_id AT3G62260.2  protein_id AT3G62260.2p  transcript_id AT3G62260.2  
At3g62270	chr3:023045530	0.0	C/23045530-23045633,23045368-23045450,23045077-23045269,23044857-23044995,23044614-23044779,23044261-23044427,23044011-23044184,23043842-23043937,23043625-23043756,23043224-23043543,23042880-23043150,23042528-23042794	AT3G62270.1  CDS  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process anion transport|GO:0006820||IEA  go_function anion exchanger activity|GO:0015380||ISS  product anion exchange family protein  note anion exchange family protein; FUNCTIONS IN: anion exchanger activity; INVOLVED IN: anion transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, eukaryotic (InterPro:IPR003020), Bicarbonate transporter, C-terminal (InterPro:IPR011531); BEST Arabidopsis thaliana protein match is: BOR1 (REQUIRES HIGH BORON 1); anion exchanger/ boron transporter (TAIR:AT2G47160.1); Has 2011 Blast hits to 1074 proteins in 144 species: Archae - 0; Bacteria - 12; Metazoa - 1646; Fungi - 204; Plants - 99; Viruses - 2; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT3G62270.1p  transcript_id AT3G62270.1  protein_id AT3G62270.1p  transcript_id AT3G62270.1  
At3g62280	chr3:023050864	0.0	C/23050864-23051116,23050569-23050751,23050330-23050493,23049794-23050064,23049484-23049710	AT3G62280.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product carboxylesterase/ hydrolase, acting on ester bonds  note carboxylesterase/ hydrolase, acting on ester bonds; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, flower, root, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT1G56670.1); Has 1627 Blast hits to 1605 proteins in 90 species: Archae - 0; Bacteria - 69; Metazoa - 1; Fungi - 10; Plants - 1545; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G62280.1p  transcript_id AT3G62280.1  protein_id AT3G62280.1p  transcript_id AT3G62280.1  
At3g62285	chr3:023051470	0.0	C/23051470-23051542	AT3G62285.1  tRNA  gene_syn 67321.TRNA-PHE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Phe (anticodon: GAA)  transcript_id AT3G62285.1  
At3g62290	chr3:023052287	0.0	W/23052287-23052434,23052745-23052815,23052953-23053072,23053157-23053275,23053375-23053456,23053540-23053545	AT3G62290.1  CDS  gene_syn ADP-ribosylation factor A1E, ATARFA1E  gene ATARFA1E  function A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.  go_component vacuole|GO:0005773|15539469|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function protein binding|GO:0005515|15723828|TAS  go_function GTP binding|GO:0005525|15723828|ISS  go_function GTP binding|GO:0005525|15723828|TAS  go_function phospholipase activator activity|GO:0016004|15723828|TAS  product ATARFA1E (ADP-ribosylation factor A1E); GTP binding / phospholipase activator/ protein binding  note ADP-ribosylation factor A1E (ATARFA1E); FUNCTIONS IN: protein binding, phospholipase activator activity, GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras small GTPase, Rab type (InterPro:IPR003579), GTP-binding protein SAR1 (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ARF1A1C; GTP binding / phospholipase activator/ protein binding (TAIR:AT2G47170.1); Has 12085 Blast hits to 12068 proteins in 421 species: Archae - 12; Bacteria - 43; Metazoa - 6641; Fungi - 1339; Plants - 1254; Viruses - 3; Other Eukaryotes - 2793 (source: NCBI BLink).  protein_id AT3G62290.1p  transcript_id AT3G62290.1  protein_id AT3G62290.1p  transcript_id AT3G62290.1  
At3g62300	chr3:023054247	0.0	W/23054247-23054708,23054790-23055203,23055324-23055572,23055760-23055844,23055944-23056147,23056233-23056337,23056432-23057081	AT3G62300.1  CDS  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  product agenet domain-containing protein  note agenet domain-containing protein; FUNCTIONS IN: RNA binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein (TAIR:AT2G47230.1); Has 172 Blast hits to 128 proteins in 26 species: Archae - 0; Bacteria - 2; Metazoa - 21; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT3G62300.1p  transcript_id AT3G62300.1  protein_id AT3G62300.1p  transcript_id AT3G62300.1  
At3g62310	chr3:023060283	0.0	C/23060283-23060561,23059949-23060151,23058774-23059858,23058277-23058402,23057943-23058181,23057744-23057862,23057516-23057645	AT3G62310.1  CDS  go_component nucleolus|GO:0005730|15496452|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function RNA helicase activity|GO:0003724||ISS  product RNA helicase, putative  note RNA helicase, putative; FUNCTIONS IN: RNA helicase activity, helicase activity, ATP binding, nucleic acid binding; LOCATED IN: nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated region (InterPro:IPR007502), Region of unknown function DUF1605 (InterPro:IPR011709), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase, putative (TAIR:AT2G47250.1); Has 7383 Blast hits to 6668 proteins in 1008 species: Archae - 2; Bacteria - 1942; Metazoa - 2132; Fungi - 846; Plants - 392; Viruses - 554; Other Eukaryotes - 1515 (source: NCBI BLink).  protein_id AT3G62310.1p  transcript_id AT3G62310.1  protein_id AT3G62310.1p  transcript_id AT3G62310.1  
At3g62320	chr3:023062001	0.0	C/23062001-23062398,23061805-23061922	AT3G62320.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT5G48350.1); Has 63 Blast hits to 63 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G62320.1p  transcript_id AT3G62320.1  protein_id AT3G62320.1p  transcript_id AT3G62320.1  
At3g62330	chr3:023065105	0.0	C/23065105-23065419,23064549-23065014,23063943-23064244,23063329-23063685	AT3G62330.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc knuckle (CCHC-type) family protein  note zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); Has 1197 Blast hits to 1065 proteins in 118 species: Archae - 0; Bacteria - 10; Metazoa - 788; Fungi - 81; Plants - 75; Viruses - 7; Other Eukaryotes - 236 (source: NCBI BLink).  protein_id AT3G62330.1p  transcript_id AT3G62330.1  protein_id AT3G62330.1p  transcript_id AT3G62330.1  
At3g62336	chr3:023068160	0.0	C/23068160-23068363	AT3G62336.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G62336.1p  transcript_id AT3G62336.1  protein_id AT3G62336.1p  transcript_id AT3G62336.1  
At3g62340	chr3:023070372	0.0	C/23070372-23070634,23070142-23070291,23069628-23070048	AT3G62340.1  CDS  gene_syn AtWRKY68, WRKY68  gene WRKY68  function member of WRKY Transcription Factor; Group II-c  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY68; transcription factor  note WRKY68; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY group IIc (InterPro:IPR017396); BEST Arabidopsis thaliana protein match is: WRKY23; transcription factor (TAIR:AT2G47260.1); Has 2035 Blast hits to 1743 proteins in 111 species: Archae - 0; Bacteria - 5; Metazoa - 13; Fungi - 0; Plants - 2003; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT3G62340.1p  transcript_id AT3G62340.1  protein_id AT3G62340.1p  transcript_id AT3G62340.1  
At3g62350	chr3:023071080	0.0	C/23071080-23071766	AT3G62350.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: S locus F-box-related / SLF-related (TAIR:AT1G71320.1); Has 77 Blast hits to 77 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G62350.1p  transcript_id AT3G62350.1  protein_id AT3G62350.1p  transcript_id AT3G62350.1  
At3g62360	chr3:023080345	0.0	C/23080345-23080455,23080051-23080116,23079872-23079958,23079738-23079794,23079566-23079630,23079276-23079451,23079038-23079099,23078757-23078840,23078415-23078574,23078098-23078213,23077869-23077997,23077719-23077808,23077496-23077567,23077288-23077383,23077133-23077210,23076793-23076921,23076486-23076656,23076157-23076360,23075949-23076062,23075631-23075863,23075398-23075443,23075068-23075316,23074661-23074891,23074398-23074489,23073806-23074034,23073364-23073720,23073207-23073280,23073020-23073125	AT3G62360.1  CDS  go_component plasma membrane|GO:0005886|17151019|IDA  go_function carbohydrate binding|GO:0030246||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  product carbohydrate binding  note carbohydrate binding; FUNCTIONS IN: carbohydrate binding; LOCATED IN: endoplasmic reticulum, plasma membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate-binding-like fold (InterPro:IPR013784), Collagen-binding surface protein Cna-like, B region (InterPro:IPR008454); Has 234 Blast hits to 193 proteins in 70 species: Archae - 4; Bacteria - 76; Metazoa - 122; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT3G62360.1p  transcript_id AT3G62360.1  protein_id AT3G62360.1p  transcript_id AT3G62360.1  
At3g62370	chr3:023080789	0.0	W/23080789-23081043,23081268-23081335,23081498-23081564,23081634-23081788,23081937-23082007,23082342-23082410,23082582-23082682,23082935-23083234	AT3G62370.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 20 Blast hits to 20 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G62370.1p  transcript_id AT3G62370.1  protein_id AT3G62370.1p  transcript_id AT3G62370.1  
At3g62380	chr3:023084507	0.0	C/23084507-23084852,23083609-23084240	AT3G62380.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: S locus F-box-related / SLF-related (TAIR:AT1G71320.1); Has 180 Blast hits to 179 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 178; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT3G62380.1p  transcript_id AT3G62380.1  protein_id AT3G62380.1p  transcript_id AT3G62380.1  
At3g62390	chr3:023088568	0.0	C/23088568-23089142,23088176-23088368,23087899-23088089,23087665-23087823,23087275-23087584	AT3G62390.1  CDS  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12060.1); Has 713 Blast hits to 702 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 713; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G62390.1p  transcript_id AT3G62390.1  protein_id AT3G62390.1p  transcript_id AT3G62390.1  
At3g62400	chr3:023090413	0.0	W/23090413-23090673	AT3G62400.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G62400.1p  transcript_id AT3G62400.1  protein_id AT3G62400.1p  transcript_id AT3G62400.1  
At3g62400	chr3:023090413	0.0	W/23090413-23090673	AT3G62400.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G62400.2p  transcript_id AT3G62400.2  protein_id AT3G62400.2p  transcript_id AT3G62400.2  
At3g62410	chr3:023091006	0.0	W/23091006-23091401	AT3G62410.1  CDS  gene_syn CP12, CP12-2  gene CP12-2  function CP12-2 encodes a small peptide found in the chloroplast stroma. It belongs to the CP12 gene family thought to be involved in the formation of a supramolecular complex with glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and phosphoribulokinase (PRK) embedded in the Calvin cycle. CP12-2 is coordinately regulated by light with the photosynthetic GAPDH and PRK. The annotation of this gene is based on article 32494.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast stroma|GO:0009570|15533878|ISS  go_process response to light stimulus|GO:0009416|15533878|IEP  go_process response to sucrose stimulus|GO:0009744|15533878|IEP  go_process peptide cross-linking via L-cystine|GO:0018316|15533878|TAS  go_process reductive pentose-phosphate cycle|GO:0019253|15533878|TAS  go_function protein binding|GO:0005515|16258009|IPI  product CP12-2; protein binding  note CP12-2; FUNCTIONS IN: protein binding; INVOLVED IN: response to light stimulus, reductive pentose-phosphate cycle, response to sucrose stimulus, peptide cross-linking via L-cystine; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function CP12 (InterPro:IPR003823); BEST Arabidopsis thaliana protein match is: CP12-1 (TAIR:AT2G47400.1); Has 179 Blast hits to 179 proteins in 52 species: Archae - 0; Bacteria - 96; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT3G62410.1p  transcript_id AT3G62410.1  protein_id AT3G62410.1p  transcript_id AT3G62410.1  
At3g62420	chr3:023091844	0.0	C/23091844-23092284	AT3G62420.1  CDS  gene_syn ATBZIP53, BASIC REGION/LEUCINE ZIPPER MOTIF 53  gene ATBZIP53  function Encodes a group-S bZIP transcription factor. Forms heterodimers with group-C bZIP transcription factors. The heterodimers bind to the ACTCAT cis-element of proline dehydrogenase gene.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700|16810321|IDA  go_function transcription factor activity|GO:0003700|16810321|IEP  go_function transcription factor activity|GO:0003700||ISS  go_function sequence-specific DNA binding|GO:0043565|16810321|IDA  go_function protein heterodimerization activity|GO:0046982|16709202|IPI  product ATBZIP53 (BASIC REGION/LEUCINE ZIPPER MOTIF 53); DNA binding / protein heterodimerization/ sequence-specific DNA binding / transcription factor  note BASIC REGION/LEUCINE ZIPPER MOTIF 53 (ATBZIP53); FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding, protein heterodimerization activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: AtbZIP44 (Arabidopsis thaliana basic leucine-zipper 44); DNA binding / protein heterodimerization/ transcription factor (TAIR:AT1G75390.1); Has 854 Blast hits to 852 proteins in 70 species: Archae - 0; Bacteria - 2; Metazoa - 11; Fungi - 2; Plants - 823; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT3G62420.1p  transcript_id AT3G62420.1  protein_id AT3G62420.1p  transcript_id AT3G62420.1  
At3g62422	chr3:023092467	0.0	C/23092467-23092553	AT3G62422.1  CDS  gene_syn CPuORF3, Conserved peptide upstream open reading frame 3  gene CPuORF3  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF3 represents a conserved upstream opening reading frame relative to major ORF AT3G62420.1  product CPuORF3 (Conserved peptide upstream open reading frame 3)  note Conserved peptide upstream open reading frame 3 (CPuORF3); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G62422.1p  transcript_id AT3G62422.1  protein_id AT3G62422.1p  transcript_id AT3G62422.1  
At3g62430	chr3:023094420	0.0	C/23094420-23095304,23094171-23094311,23093795-23094082	AT3G62430.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: syntaxin-related family protein (TAIR:AT3G54160.1); Has 793 Blast hits to 773 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 793; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G62430.1p  transcript_id AT3G62430.1  protein_id AT3G62430.1p  transcript_id AT3G62430.1  
At3g62440	chr3:023096782	0.0	C/23096782-23097726,23096475-23096612,23096104-23096394	AT3G62440.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G15620.1); Has 1118 Blast hits to 1085 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1116; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G62440.1p  transcript_id AT3G62440.1  protein_id AT3G62440.1p  transcript_id AT3G62440.1  
At3g62450	chr3:023098144	0.0	W/23098144-23098243,23098506-23098630	AT3G62450.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 11 Blast hits to 11 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G62450.1p  transcript_id AT3G62450.1  protein_id AT3G62450.1p  transcript_id AT3G62450.1  
At3g62455	chr3:023100568	0.0	C/23100568-23104580	AT3G62455.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 7.1e-232 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At3g62460	chr3:023105201	0.0	C/23105201-23105579,23104885-23105108	AT3G62460.1  CDS  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: male gametophyte; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: PBS lyase HEAT-like repeat-containing protein (TAIR:AT3G62530.1); Has 68 Blast hits to 66 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G62460.1p  transcript_id AT3G62460.1  protein_id AT3G62460.1p  transcript_id AT3G62460.1  
At3g62470	chr3:023106600	0.0	C/23106600-23108399	AT3G62470.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G62540.1); Has 17488 Blast hits to 5422 proteins in 175 species: Archae - 3; Bacteria - 14; Metazoa - 420; Fungi - 360; Plants - 15932; Viruses - 0; Other Eukaryotes - 759 (source: NCBI BLink).  protein_id AT3G62470.1p  transcript_id AT3G62470.1  protein_id AT3G62470.1p  transcript_id AT3G62470.1  
At3g62475	chr3:023109100	0.0	W/23109100-23110680	AT3G62475.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 2.3e-55 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At3g62480	chr3:023111283	0.0	C/23111283-23111873	AT3G62480.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G01031.1)  
At3g62490	chr3:023112500	0.0	C/23112500-23114999	AT3G62490.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to ASY2, DNA binding [Arabidopsis thaliana] (TAIR:AT4G32200.1); similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT4G20730.1); similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT3G10100.1); contains domain (Phosphotyrosine protein) phosphatases II (SSF52799)  
At3g62499	chr3:023119919	0.0	W/23119919-23120149	AT3G62499.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: YT521-B-like protein (InterPro:IPR007275); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G62499.1p  transcript_id AT3G62499.1  protein_id AT3G62499.1p  transcript_id AT3G62499.1  
At3g62500	chr3:023120423	0.0	W/23120423-23120954,23121161-23121277,23121352-23121384,23121497-23121667,23121767-23121874,23121972-23122041,23122129-23122222	AT3G62500.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, embryo; EXPRESSED DURING: D bilateral stage; BEST Arabidopsis thaliana protein match is: SDG14 (SET DOMAIN PROTEIN 14); DNA binding / protein binding / zinc ion binding (TAIR:AT3G61740.2); Has 30 Blast hits to 30 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G62500.1p  transcript_id AT3G62500.1  protein_id AT3G62500.1p  transcript_id AT3G62500.1  
At3g62510	chr3:023123398	0.0	W/23123398-23123460,23123556-23123774	AT3G62510.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product protein disulfide isomerase-related  note protein disulfide isomerase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: ATPDIL1-2 (PDI-LIKE 1-2); protein disulfide isomerase (TAIR:AT1G77510.1); Has 182 Blast hits to 182 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 85; Fungi - 2; Plants - 86; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT3G62510.1p  transcript_id AT3G62510.1  protein_id AT3G62510.1p  transcript_id AT3G62510.1  
At3g62520	chr3:023125124	0.0	W/23125124-23127241	AT3G62520.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 1.1e-86 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays)  
At3g62528	chr3:023131482	0.0	C/23131482-23131655	AT3G62528.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G62528.1p  transcript_id AT3G62528.1  protein_id AT3G62528.1p  transcript_id AT3G62528.1  
At3g62529	chr3:023131646	0.0	W/23131646-23131975	AT3G62529.1  pseudogenic_transcript  pseudo  function pseudogene of pentatricopeptide (PPR) repeat-containing protein  
At3g62530	chr3:023132219	0.0	W/23132219-23132490,23132562-23132700,23132792-23132918,23132994-23133121	AT3G62530.1  CDS  go_component nucleolus|GO:0005730|15496452|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_function metal ion binding|GO:0046872|12606038|IDA  go_component mitochondrion|GO:0005739|12606038|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component phycobilisome|GO:0030089||ISS  go_process biological_process|GO:0008150||ND  go_function lyase activity|GO:0016829||ISS  product PBS lyase HEAT-like repeat-containing protein  note PBS lyase HEAT-like repeat-containing protein; FUNCTIONS IN: lyase activity, metal ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, nucleolus, chloroplast, phycobilisome; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), PBS lyase HEAT-like repeat (InterPro:IPR004155); BEST Arabidopsis thaliana protein match is: PBS lyase HEAT-like repeat-containing protein (TAIR:AT3G58180.1); Has 936 Blast hits to 521 proteins in 200 species: Archae - 116; Bacteria - 182; Metazoa - 196; Fungi - 214; Plants - 70; Viruses - 0; Other Eukaryotes - 158 (source: NCBI BLink).  protein_id AT3G62530.1p  transcript_id AT3G62530.1  protein_id AT3G62530.1p  transcript_id AT3G62530.1  
At3g62540	chr3:023133514	0.0	C/23133514-23135313	AT3G62540.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G14820.1); Has 16861 Blast hits to 5311 proteins in 170 species: Archae - 3; Bacteria - 10; Metazoa - 416; Fungi - 317; Plants - 15393; Viruses - 0; Other Eukaryotes - 722 (source: NCBI BLink).  protein_id AT3G62540.1p  transcript_id AT3G62540.1  protein_id AT3G62540.1p  transcript_id AT3G62540.1  
At3g62550	chr3:023136194	0.0	W/23136194-23136365,23136454-23136563,23136789-23136907,23136987-23137074	AT3G62550.1  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_process response to stress|GO:0006950||IEA  go_process response to stress|GO:0006950||ISS  go_function molecular_function|GO:0003674||ND  product universal stress protein (USP) family protein  note universal stress protein (USP) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: ethylene-responsive protein, putative (TAIR:AT1G09740.1); Has 1616 Blast hits to 1599 proteins in 385 species: Archae - 141; Bacteria - 962; Metazoa - 41; Fungi - 11; Plants - 403; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT3G62550.1p  transcript_id AT3G62550.1  protein_id AT3G62550.1p  transcript_id AT3G62550.1  
At3g62560	chr3:023137539	0.0	W/23137539-23137667,23137780-23137911,23138560-23138880	AT3G62560.1  CDS  go_component intracellular|GO:0005622||IEA  go_component endomembrane system|GO:0012505||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function GTP binding|GO:0005525||IEA  product GTP-binding protein, putative  note GTP-binding protein, putative; FUNCTIONS IN: GTP binding; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), GTP-binding protein SAR1 (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ATSAR2 (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2); GTP binding (TAIR:AT4G02080.1); Has 5231 Blast hits to 5228 proteins in 291 species: Archae - 2; Bacteria - 39; Metazoa - 2741; Fungi - 852; Plants - 681; Viruses - 0; Other Eukaryotes - 916 (source: NCBI BLink).  protein_id AT3G62560.1p  transcript_id AT3G62560.1  protein_id AT3G62560.1p  transcript_id AT3G62560.1  
At3g62570	chr3:023142616	0.0	W/23142616-23142675,23142777-23143186,23143375-23144563	AT3G62570.1  CDS  go_component vacuole|GO:0005773|14760709|IDA  go_function binding|GO:0005488||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding, binding; INVOLVED IN: protein folding; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G47440.1); Has 234 Blast hits to 226 proteins in 74 species: Archae - 0; Bacteria - 4; Metazoa - 81; Fungi - 42; Plants - 89; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT3G62570.1p  transcript_id AT3G62570.1  protein_id AT3G62570.1p  transcript_id AT3G62570.1  
At3g62580	chr3:023146931	0.0	W/23146931-23147136,23147212-23147431,23147520-23147735	AT3G62580.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: late embryogenesis abundant domain-containing protein / LEA domain-containing protein (TAIR:AT1G72100.1); Has 237 Blast hits to 236 proteins in 85 species: Archae - 0; Bacteria - 4; Metazoa - 103; Fungi - 69; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G62580.1p  transcript_id AT3G62580.1  protein_id AT3G62580.1p  transcript_id AT3G62580.1  
At3g62590	chr3:023149603	0.0	C/23149603-23150169,23149125-23149517,23148562-23149041,23147973-23148482	AT3G62590.1  CDS  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_component cellular_component|GO:0005575||ND  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product lipase class 3 family protein  note lipase class 3 family protein; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: lipase class 3 family protein (TAIR:AT1G02660.1); Has 135 Blast hits to 132 proteins in 41 species: Archae - 0; Bacteria - 5; Metazoa - 17; Fungi - 25; Plants - 53; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT3G62590.1p  transcript_id AT3G62590.1  protein_id AT3G62590.1p  transcript_id AT3G62590.1  
At3g62600	chr3:023153276	0.0	C/23153276-23153346,23153052-23153200,23152821-23152956,23152369-23152480,23151997-23152113,23151824-23151910,23151625-23151684,23151461-23151538,23151291-23151362,23151038-23151196	AT3G62600.1  CDS  gene_syn ATERDJ3B  gene ATERDJ3B  function J domain protein localized in ER lumen. Can partially compensate for the growth defect in jem1 scj1 mutant yeast.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component endoplasmic reticulum lumen|GO:0005788|18718935|IDA  go_process protein folding|GO:0006457||ISS  product ATERDJ3B; heat shock protein binding / unfolded protein binding  note ATERDJ3B; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: plasma membrane, endoplasmic reticulum lumen; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: ATJ2; protein binding (TAIR:AT5G22060.1); Has 19778 Blast hits to 19735 proteins in 2101 species: Archae - 123; Bacteria - 5793; Metazoa - 3854; Fungi - 1694; Plants - 1403; Viruses - 15; Other Eukaryotes - 6896 (source: NCBI BLink).  protein_id AT3G62600.1p  transcript_id AT3G62600.1  protein_id AT3G62600.1p  transcript_id AT3G62600.1  
At3g62610	chr3:023154758	0.0	W/23154758-23154890,23155307-23155436,23155603-23156371	AT3G62610.1  CDS  gene_syn ATMYB11, MYB DOMAIN PROTEIN 11, PFG2, PRODUCTION OF FLAVONOL GLYCOSIDES 2  gene ATMYB11  function Member of the R2R3 factor gene family.  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_process flavonol biosynthetic process|GO:0051555|17419845|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ATMYB11 (MYB DOMAIN PROTEIN 11); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 11 (ATMYB11); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: flavonol biosynthetic process, regulation of transcription, DNA-dependent; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB12 (MYB DOMAIN PROTEIN 12); DNA binding / transcription activator/ transcription factor (TAIR:AT2G47460.1); Has 6122 Blast hits to 5687 proteins in 350 species: Archae - 0; Bacteria - 0; Metazoa - 635; Fungi - 274; Plants - 3775; Viruses - 3; Other Eukaryotes - 1435 (source: NCBI BLink).  protein_id AT3G62610.1p  transcript_id AT3G62610.1  protein_id AT3G62610.1p  transcript_id AT3G62610.1  
At3g62620	chr3:023159845	0.0	W/23159845-23159923,23160036-23160075,23160199-23160320,23160410-23160543,23160690-23160791,23160887-23161266,23161387-23161606	AT3G62620.1  CDS  go_process biological_process|GO:0008150||ND  product sucrose-phosphatase-related  note sucrose-phosphatase-related; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 168 Blast hits to 150 proteins in 44 species: Archae - 0; Bacteria - 13; Metazoa - 45; Fungi - 27; Plants - 8; Viruses - 5; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT3G62620.1p  transcript_id AT3G62620.1  protein_id AT3G62620.1p  transcript_id AT3G62620.1  
At3g62620	chr3:023159845	0.0	W/23159845-23159923,23160036-23160075,23160199-23160320,23160410-23160543,23160690-23160791,23160887-23161270	AT3G62620.2  CDS  go_process biological_process|GO:0008150||ND  product sucrose-phosphatase-related  note sucrose-phosphatase-related; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 132 Blast hits to 108 proteins in 34 species: Archae - 0; Bacteria - 6; Metazoa - 25; Fungi - 27; Plants - 8; Viruses - 5; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT3G62620.2p  transcript_id AT3G62620.2  protein_id AT3G62620.2p  transcript_id AT3G62620.2  
At3g62630	chr3:023163937	0.0	C/23163937-23165079	AT3G62630.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1645 (InterPro:IPR012442); BEST Arabidopsis thaliana protein match is: calmodulin-binding protein (TAIR:AT2G15760.1); Has 207 Blast hits to 197 proteins in 50 species: Archae - 3; Bacteria - 4; Metazoa - 52; Fungi - 9; Plants - 91; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT3G62630.1p  transcript_id AT3G62630.1  protein_id AT3G62630.1p  transcript_id AT3G62630.1  
At3g62640	chr3:023166511	0.0	C/23166511-23166843	AT3G62640.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G47480.1); Has 126 Blast hits to 126 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 126; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G62640.1p  transcript_id AT3G62640.1  protein_id AT3G62640.1p  transcript_id AT3G62640.1  
At3g62650	chr3:023168531	0.0	W/23168531-23168989	AT3G62650.1  CDS  product unknown protein  note unknown protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G47485.1); Has 23 Blast hits to 23 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G62650.1p  transcript_id AT3G62650.1  protein_id AT3G62650.1p  transcript_id AT3G62650.1  
At3g62650	chr3:023168531	0.0	W/23168531-23168989	AT3G62650.2  CDS  product unknown protein  note unknown protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G47485.1); Has 23 Blast hits to 23 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G62650.2p  transcript_id AT3G62650.2  protein_id AT3G62650.2p  transcript_id AT3G62650.2  
At3g62660	chr3:023173419	0.0	W/23173419-23174504	AT3G62660.1  CDS  gene_syn GATL7, Galacturonosyltransferase-like 7  gene GATL7  function Encodes a protein with putative galacturonosyltransferase activity.  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS  product GATL7 (Galacturonosyltransferase-like 7); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note Galacturonosyltransferase-like 7 (GATL7); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: GATL5 (GALACTURONOSYLTRANSFERASE 5); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT1G02720.2); Has 992 Blast hits to 988 proteins in 166 species: Archae - 0; Bacteria - 269; Metazoa - 242; Fungi - 2; Plants - 419; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT3G62660.1p  transcript_id AT3G62660.1  protein_id AT3G62660.1p  transcript_id AT3G62660.1  
At3g62670	chr3:023178102	0.0	C/23178102-23178294,23177799-23177951,23177312-23177671,23177143-23177231,23176556-23177041	AT3G62670.1  CDS  gene_syn ARABIDOPSIS RESPONSE REGULATOR 20, ARR20, MEE41, maternal effect embryo arrest 41  gene ARR20  function member of Response Regulator: B- Type  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function two-component response regulator activity|GO:0000156|11574878|ISS  go_function two-component response regulator activity|GO:0000156|12068096|ISS  go_function two-component response regulator activity|GO:0000156||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ARR20 (ARABIDOPSIS RESPONSE REGULATOR 20); transcription factor/ two-component response regulator  note ARABIDOPSIS RESPONSE REGULATOR 20 (ARR20); FUNCTIONS IN: transcription factor activity, two-component response regulator activity; INVOLVED IN: embryonic development ending in seed dormancy, cytokinin mediated signaling, regulation of transcription; EXPRESSED IN: hydathode, leaf vascular system, shoot meristem; CONTAINS InterPro DOMAIN/s: Response regulator, plant B-type (InterPro:IPR017053), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), CheY-like (InterPro:IPR011006), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Signal transduction response regulator, receiver region (InterPro:IPR001789), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1); transcription factor/ two-component response regulator (TAIR:AT3G16857.2); Has 24365 Blast hits to 24296 proteins in 1490 species: Archae - 131; Bacteria - 19420; Metazoa - 5; Fungi - 101; Plants - 1267; Viruses - 1; Other Eukaryotes - 3440 (source: NCBI BLink).  protein_id AT3G62670.1p  transcript_id AT3G62670.1  protein_id AT3G62670.1p  transcript_id AT3G62670.1  
At3g62680	chr3:023182778	0.0	W/23182778-23183390,23183491-23183819	AT3G62680.1  CDS  gene_syn ARABIDOPSIS THALIANA PROLINE-RICH PROTEIN 3, ATPRP3, PROLINE-RICH PROTEIN 3, PRP3  gene PRP3  function Proline-rich protein  go_function structural constituent of cell wall|GO:0005199||IEA  go_component cell wall|GO:0005618|10594096|ISS  go_process trichoblast differentiation|GO:0010054|10712533|TAS  product PRP3 (PROLINE-RICH PROTEIN 3); structural constituent of cell wall  note PROLINE-RICH PROTEIN 3 (PRP3); FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: trichoblast differentiation; LOCATED IN: cell wall; EXPRESSED IN: root hair, root; CONTAINS InterPro DOMAIN/s: Extensin-like protein (InterPro:IPR003883); BEST Arabidopsis thaliana protein match is: ATPRP1 (PROLINE-RICH PROTEIN 1); structural constituent of cell wall (TAIR:AT1G54970.1); Has 44854 Blast hits to 19212 proteins in 1125 species: Archae - 257; Bacteria - 6310; Metazoa - 17842; Fungi - 4943; Plants - 7860; Viruses - 1674; Other Eukaryotes - 5968 (source: NCBI BLink).  protein_id AT3G62680.1p  transcript_id AT3G62680.1  protein_id AT3G62680.1p  transcript_id AT3G62680.1  
At3g62690	chr3:023185829	0.0	C/23185829-23186602	AT3G62690.1  CDS  gene_syn ATL5  gene ATL5  function Encodes a RING-H2 zinc finger protein related to ATL2. The ATL gene family is represented by fifteen sequences that contain, in addition to the RING, a transmembrane domain which is located in most of them towards the N-terminal end.  go_component membrane|GO:0016020|10480382|ISS  go_process protein complex assembly|GO:0006461|10480382|TAS  go_function protein binding|GO:0005515|10480382|ISS  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product ATL5 (ATL5); protein binding / zinc ion binding  note ATL5 (ATL5); FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: protein complex assembly; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G47560.1); Has 7240 Blast hits to 7222 proteins in 246 species: Archae - 0; Bacteria - 0; Metazoa - 2331; Fungi - 731; Plants - 2794; Viruses - 115; Other Eukaryotes - 1269 (source: NCBI BLink).  protein_id AT3G62690.1p  transcript_id AT3G62690.1  protein_id AT3G62690.1p  transcript_id AT3G62690.1  
At3g62700	chr3:023193316	0.0	C/23193316-23195727,23193152-23193238,23192348-23193082,23192095-23192259,23191685-23191979,23191082-23191602,23190930-23190993,23190606-23190845,23190428-23190528	AT3G62700.1  CDS  gene_syn ATMRP10  gene ATMRP10  function member of MRP subfamily  go_component plant-type vacuole|GO:0000325|16618929|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process transport|GO:0006810||IEA  go_component vacuolar membrane|GO:0005774|16618929|IDA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|11346655|ISS  product ATMRP10; ATPase, coupled to transmembrane movement of substances  note ATMRP10; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATMRP4 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 4); ATPase, coupled to transmembrane movement of substances / folic acid transporter (TAIR:AT2G47800.1); Has 416058 Blast hits to 216984 proteins in 2589 species: Archae - 7846; Bacteria - 294954; Metazoa - 11554; Fungi - 5753; Plants - 3253; Viruses - 14; Other Eukaryotes - 92684 (source: NCBI BLink).  protein_id AT3G62700.1p  transcript_id AT3G62700.1  protein_id AT3G62700.1p  transcript_id AT3G62700.1  
At3g62710	chr3:023200280	0.0	C/23200280-23200559,23199985-23200180,23199807-23199897,23199589-23199716,23199159-23199507,23198881-23199066,23198430-23198676,23197739-23198214	AT3G62710.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function xylan 1,4-beta-xylosidase activity|GO:0009044|15517348|TAS  product glycosyl hydrolase family 3 protein  note glycosyl hydrolase family 3 protein; FUNCTIONS IN: xylan 1,4-beta-xylosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 3 protein (TAIR:AT5G20950.2); Has 6428 Blast hits to 6087 proteins in 963 species: Archae - 22; Bacteria - 3408; Metazoa - 6; Fungi - 874; Plants - 276; Viruses - 0; Other Eukaryotes - 1842 (source: NCBI BLink).  protein_id AT3G62710.1p  transcript_id AT3G62710.1  protein_id AT3G62710.1p  transcript_id AT3G62710.1  
At3g62720	chr3:023201326	0.0	W/23201326-23202708	AT3G62720.1  CDS  gene_syn ATXT1, XT1, XXT1, XYG XYLOSYLTRANSFERASE 1, XYLOSYLTRANSFERASE 1  gene XT1  function Encodes a protein with xylosyltransferase activity, which is specific for UDP-xylose as donor substrate and for oligosaccharides with a degree of polymerization >4. Although the enzyme utilizes either cellopentaose or cellohexaose, its activity is four-fold higher with cellohexaose as an acceptor compared to cellopentaose. The enzyme is able to add several xylosyl residues to the acceptor forming mono-, di- and trixylosylated polysaccharides.  go_component mitochondrion|GO:0005739||IEA  go_component integral to membrane|GO:0016021||IEA  go_process polysaccharide biosynthetic process|GO:0000271|16982611|IDA  go_process xyloglucan biosynthetic process|GO:0009969|18544630|IGI  go_process root hair elongation|GO:0048767|18544630|IGI  go_function transferase activity|GO:0016740||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function xyloglucan 6-xylosyltransferase activity|GO:0033843|16982611|IDA  go_function UDP-xylosyltransferase activity|GO:0035252|16982611|IDA  product XT1 (XYLOSYLTRANSFERASE 1); UDP-xylosyltransferase/ transferase/ transferase, transferring glycosyl groups / xyloglucan 6-xylosyltransferase  note XYLOSYLTRANSFERASE 1 (XT1); FUNCTIONS IN: xyloglucan 6-xylosyltransferase activity, UDP-xylosyltransferase activity, transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: polysaccharide biosynthetic process, xyloglucan biosynthetic process, root hair elongation; LOCATED IN: mitochondrion, integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Galactosyl transferase (InterPro:IPR008630); BEST Arabidopsis thaliana protein match is: XT2 (UDP-XYLOSYLTRANSFERASE 2); UDP-xylosyltransferase/ transferase/ transferase, transferring glycosyl groups / xyloglucan 6-xylosyltransferase (TAIR:AT4G02500.1); Has 289 Blast hits to 289 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 106; Plants - 173; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT3G62720.1p  transcript_id AT3G62720.1  protein_id AT3G62720.1p  transcript_id AT3G62720.1  
At3g62720	chr3:023201326	0.0	W/23201326-23202708	AT3G62720.2  CDS  gene_syn ATXT1, XT1, XXT1, XYG XYLOSYLTRANSFERASE 1, XYLOSYLTRANSFERASE 1  gene XT1  function Encodes a protein with xylosyltransferase activity, which is specific for UDP-xylose as donor substrate and for oligosaccharides with a degree of polymerization >4. Although the enzyme utilizes either cellopentaose or cellohexaose, its activity is four-fold higher with cellohexaose as an acceptor compared to cellopentaose. The enzyme is able to add several xylosyl residues to the acceptor forming mono-, di- and trixylosylated polysaccharides.  go_component mitochondrion|GO:0005739||IEA  go_component integral to membrane|GO:0016021||IEA  go_process polysaccharide biosynthetic process|GO:0000271|16982611|IDA  go_process xyloglucan biosynthetic process|GO:0009969|18544630|IGI  go_process root hair elongation|GO:0048767|18544630|IGI  go_function transferase activity|GO:0016740||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function xyloglucan 6-xylosyltransferase activity|GO:0033843|16982611|IDA  go_function UDP-xylosyltransferase activity|GO:0035252|16982611|IDA  product XT1 (XYLOSYLTRANSFERASE 1); UDP-xylosyltransferase/ transferase/ transferase, transferring glycosyl groups / xyloglucan 6-xylosyltransferase  note XYLOSYLTRANSFERASE 1 (XT1); FUNCTIONS IN: xyloglucan 6-xylosyltransferase activity, UDP-xylosyltransferase activity, transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: polysaccharide biosynthetic process, xyloglucan biosynthetic process, root hair elongation; LOCATED IN: mitochondrion, integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Galactosyl transferase (InterPro:IPR008630); BEST Arabidopsis thaliana protein match is: XT2 (UDP-XYLOSYLTRANSFERASE 2); UDP-xylosyltransferase/ transferase/ transferase, transferring glycosyl groups / xyloglucan 6-xylosyltransferase (TAIR:AT4G02500.1); Has 289 Blast hits to 289 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 106; Plants - 173; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT3G62720.2p  transcript_id AT3G62720.2  protein_id AT3G62720.2p  transcript_id AT3G62720.2  
At3g62725	chr3:023203792	0.0	C/23203792-23207565	AT3G62725.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.2e-41 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)  
At3g62730	chr3:023209129	0.0	C/23209129-23209436,23208818-23209043,23208003-23208422	AT3G62730.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47980.1); Has 77 Blast hits to 77 proteins in 24 species: Archae - 0; Bacteria - 36; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G62730.1p  transcript_id AT3G62730.1  protein_id AT3G62730.1p  transcript_id AT3G62730.1  
At3g62735	chr3:023210707	0.0	W/23210707-23210777	AT3G62735.1  tRNA  gene_syn 67323.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: CCC)  transcript_id AT3G62735.1  
At3g62740	chr3:023211416	0.0	W/23211416-23211541,23211624-23211687,23211765-23211817,23211901-23211976,23212072-23212143,23212232-23212319,23212391-23212634,23212707-23212822,23212891-23213117,23213186-23213211,23213295-23213382,23213475-23213565,23213651-23213888	AT3G62740.1  CDS  gene_syn BETA GLUCOSIDASE 7, BGLU7  gene BGLU7  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU7 (BETA GLUCOSIDASE 7); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 7 (BGLU7); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU8 (BETA GLUCOSIDASE 8); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT3G62750.1); Has 5684 Blast hits to 5449 proteins in 796 species: Archae - 100; Bacteria - 3111; Metazoa - 594; Fungi - 138; Plants - 847; Viruses - 0; Other Eukaryotes - 894 (source: NCBI BLink).  protein_id AT3G62740.1p  transcript_id AT3G62740.1  protein_id AT3G62740.1p  transcript_id AT3G62740.1  
At3g62750	chr3:023214375	0.0	W/23214375-23214500,23214595-23214658,23214747-23214796,23214869-23214944,23215040-23215111,23215185-23215272,23215373-23215601,23215674-23215789,23215854-23216083,23216169-23216194,23216268-23216355,23216459-23216549,23216663-23216900	AT3G62750.1  CDS  gene_syn BETA GLUCOSIDASE 8, BGLU8  gene BGLU8  go_component vacuole|GO:0005773|15539469|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU8 (BETA GLUCOSIDASE 8); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 8 (BGLU8); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU7 (BETA GLUCOSIDASE 7); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT3G62740.1); Has 5734 Blast hits to 5502 proteins in 797 species: Archae - 100; Bacteria - 3119; Metazoa - 601; Fungi - 136; Plants - 847; Viruses - 0; Other Eukaryotes - 931 (source: NCBI BLink).  protein_id AT3G62750.1p  transcript_id AT3G62750.1  protein_id AT3G62750.1p  transcript_id AT3G62750.1  
At3g62760	chr3:023218100	0.0	C/23218100-23218246,23217957-23218005,23217425-23217888	AT3G62760.1  CDS  gene_syn ATGSTF13  gene ATGSTF13  function Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTF13; glutathione transferase  note ATGSTF13; FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTF6 (GLUTATHIONE S-TRANSFERASE); copper ion binding / glutathione binding / glutathione transferase (TAIR:AT1G02930.1); Has 11250 Blast hits to 11241 proteins in 980 species: Archae - 0; Bacteria - 5383; Metazoa - 1989; Fungi - 526; Plants - 803; Viruses - 0; Other Eukaryotes - 2549 (source: NCBI BLink).  protein_id AT3G62760.1p  transcript_id AT3G62760.1  protein_id AT3G62760.1p  transcript_id AT3G62760.1  
At3g62770	chr3:023220253	0.0	C/23220253-23221110,23219336-23219537,23219091-23219221	AT3G62770.3  CDS  gene_syn AtATG18a  gene AtATG18a  function Required for autophagosome formation during nutrient deprivation and senescence.  go_component chloroplast|GO:0009507||IEA  go_process autophagy|GO:0006914|15860012|IMP  go_process senescence|GO:0010149|15860012|IEP  go_process senescence|GO:0010149|15860012|IMP  go_process response to starvation|GO:0042594|15860012|IEP  go_process response to starvation|GO:0042594|15860012|IMP  go_function molecular_function|GO:0003674||ND  product AtATG18a  note AtATG18a; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: autophagy, response to starvation, senescence; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: AtATG18d (TAIR:AT3G56440.1); Has 916 Blast hits to 880 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 433; Fungi - 289; Plants - 76; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).  protein_id AT3G62770.3p  transcript_id AT3G62770.3  protein_id AT3G62770.3p  transcript_id AT3G62770.3  
At3g62770	chr3:023220253	0.0	C/23220253-23221110,23219336-23219537,23219095-23219221,23218858-23218948	AT3G62770.1  CDS  gene_syn AtATG18a  gene AtATG18a  function Required for autophagosome formation during nutrient deprivation and senescence.  go_component chloroplast|GO:0009507||IEA  go_process autophagy|GO:0006914|15860012|IMP  go_process senescence|GO:0010149|15860012|IEP  go_process senescence|GO:0010149|15860012|IMP  go_process response to starvation|GO:0042594|15860012|IEP  go_process response to starvation|GO:0042594|15860012|IMP  go_function molecular_function|GO:0003674||ND  product AtATG18a  note AtATG18a; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: autophagy, response to starvation, senescence; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: AtATG18d (TAIR:AT3G56440.1); Has 916 Blast hits to 880 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 433; Fungi - 289; Plants - 76; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).  protein_id AT3G62770.1p  transcript_id AT3G62770.1  protein_id AT3G62770.1p  transcript_id AT3G62770.1  
At3g62780	chr3:023222029	0.0	C/23222029-23222925	AT3G62780.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, root, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.12 twelve leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT3G16510.1); Has 568 Blast hits to 477 proteins in 88 species: Archae - 0; Bacteria - 10; Metazoa - 209; Fungi - 19; Plants - 222; Viruses - 29; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT3G62780.1p  transcript_id AT3G62780.1  protein_id AT3G62780.1p  transcript_id AT3G62780.1  
At3g62790	chr3:023224072	0.0	C/23224072-23224221,23223321-23223422	AT3G62790.1  CDS  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NADH-ubiquinone oxidoreductase-related  note NADH-ubiquinone oxidoreductase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: NADH-ubiquinone oxidoreductase-related (TAIR:AT2G47690.1); Has 85 Blast hits to 85 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 43; Plants - 36; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G62790.1p  transcript_id AT3G62790.1  protein_id AT3G62790.1p  transcript_id AT3G62790.1  
At3g62800	chr3:023226933	0.0	C/23226933-23227163,23226462-23226843,23225749-23226203	AT3G62800.1  CDS  gene_syn DOUBLE-STRANDED-RNA-BINDING PROTEIN 4, DRB4  gene DRB4  function Encodes a nuclear dsRNA-binding protein that interacts specifically with DCL4. May regulate DCL4 function and thereby affect miRNA biogenesis. DRB4 interacts with the P6 viral protein from Cauliflower mosaic virus and may be a target of viral silencing suppression.  go_component nucleus|GO:0005634|15821876|IDA  go_process RNA interference, production of ta-siRNAs|GO:0010267|16682354|IMP  go_function double-stranded RNA binding|GO:0003725|15821876|IDA  go_function double-stranded RNA binding|GO:0003725||ISS  go_function protein binding|GO:0005515|15821876|IPI  product DRB4 (DOUBLE-STRANDED-RNA-BINDING PROTEIN 4); double-stranded RNA binding / protein binding  note DOUBLE-STRANDED-RNA-BINDING PROTEIN 4 (DRB4); FUNCTIONS IN: double-stranded RNA binding, protein binding; INVOLVED IN: RNA interference, production of ta-siRNAs; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: DRB3 (dsRNA-binding protein 3); RNA binding / double-stranded RNA binding (TAIR:AT3G26932.2); Has 525 Blast hits to 492 proteins in 156 species: Archae - 0; Bacteria - 214; Metazoa - 122; Fungi - 2; Plants - 114; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT3G62800.1p  transcript_id AT3G62800.1  protein_id AT3G62800.1p  transcript_id AT3G62800.1  
At3g62800	chr3:023226933	0.0	C/23226933-23227163,23226462-23226843,23225749-23226203	AT3G62800.2  CDS  gene_syn DOUBLE-STRANDED-RNA-BINDING PROTEIN 4, DRB4  gene DRB4  function Encodes a nuclear dsRNA-binding protein that interacts specifically with DCL4. May regulate DCL4 function and thereby affect miRNA biogenesis. DRB4 interacts with the P6 viral protein from Cauliflower mosaic virus and may be a target of viral silencing suppression.  go_component nucleus|GO:0005634|15821876|IDA  go_process RNA interference, production of ta-siRNAs|GO:0010267|16682354|IMP  go_function double-stranded RNA binding|GO:0003725|15821876|IDA  go_function double-stranded RNA binding|GO:0003725||ISS  go_function protein binding|GO:0005515|15821876|IPI  product DRB4 (DOUBLE-STRANDED-RNA-BINDING PROTEIN 4); double-stranded RNA binding / protein binding  note DOUBLE-STRANDED-RNA-BINDING PROTEIN 4 (DRB4); FUNCTIONS IN: double-stranded RNA binding, protein binding; INVOLVED IN: RNA interference, production of ta-siRNAs; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: DRB3 (dsRNA-binding protein 3); RNA binding / double-stranded RNA binding (TAIR:AT3G26932.2); Has 525 Blast hits to 492 proteins in 156 species: Archae - 0; Bacteria - 214; Metazoa - 122; Fungi - 2; Plants - 114; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT3G62800.2p  transcript_id AT3G62800.2  protein_id AT3G62800.2p  transcript_id AT3G62800.2  
At3g62800	chr3:023226933	0.0	C/23226933-23227163,23226462-23226843,23226090-23226203,23225749-23226011	AT3G62800.3  CDS  gene_syn DOUBLE-STRANDED-RNA-BINDING PROTEIN 4, DRB4  gene DRB4  function Encodes a nuclear dsRNA-binding protein that interacts specifically with DCL4. May regulate DCL4 function and thereby affect miRNA biogenesis. DRB4 interacts with the P6 viral protein from Cauliflower mosaic virus and may be a target of viral silencing suppression.  go_component nucleus|GO:0005634|15821876|IDA  go_process RNA interference, production of ta-siRNAs|GO:0010267|16682354|IMP  go_function double-stranded RNA binding|GO:0003725|15821876|IDA  go_function double-stranded RNA binding|GO:0003725||ISS  go_function protein binding|GO:0005515|15821876|IPI  product DRB4 (DOUBLE-STRANDED-RNA-BINDING PROTEIN 4); double-stranded RNA binding / protein binding  note DOUBLE-STRANDED-RNA-BINDING PROTEIN 4 (DRB4); FUNCTIONS IN: double-stranded RNA binding, protein binding; INVOLVED IN: RNA interference, production of ta-siRNAs; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: DRB3 (dsRNA-binding protein 3); RNA binding / double-stranded RNA binding (TAIR:AT3G26932.2).  protein_id AT3G62800.3p  transcript_id AT3G62800.3  protein_id AT3G62800.3p  transcript_id AT3G62800.3  
At3g62810	chr3:023227763	0.0	W/23227763-23228003,23228101-23228180	AT3G62810.1  CDS  go_function catalytic activity|GO:0003824||ISS  product complex 1 family protein / LVR family protein  note complex 1 family protein / LVR family protein; FUNCTIONS IN: catalytic activity; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 68 Blast hits to 68 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 22; Fungi - 22; Plants - 17; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT3G62810.1p  transcript_id AT3G62810.1  protein_id AT3G62810.1p  transcript_id AT3G62810.1  
At3g62820	chr3:023229782	0.0	W/23229782-23230366	AT3G62820.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT2G47670.1); Has 438 Blast hits to 433 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 438; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G62820.1p  transcript_id AT3G62820.1  protein_id AT3G62820.1p  transcript_id AT3G62820.1  
At3g62830	chr3:023232539	0.0	W/23232539-23233156,23233239-23233386,23233903-23233982,23234075-23234158,23234252-23234326,23234929-23235021,23235114-23235353	AT3G62830.1  CDS  gene_syn ATUXS2, AUD1, UDP-GLUCURONIC ACID DECARBOXYLASE 2, UXS2  gene AUD1  function encodes an isoform of UDP-glucuronic acid decarboxylase, which is predicted to be membrane-bound by PSORT. This enzyme produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component Golgi membrane|GO:0000139|15655675|IDA  go_component membrane|GO:0016020|12481102|TAS  go_process nucleotide-sugar metabolic process|GO:0009225||ISS  go_process dTDP-rhamnose biosynthetic process|GO:0019305|11554483|ISS  go_process D-xylose metabolic process|GO:0042732|12481102|IDA  go_function catalytic activity|GO:0003824||ISS  go_function dTDP-glucose 4,6-dehydratase activity|GO:0008460|11554483|ISS  go_function UDP-glucuronate decarboxylase activity|GO:0048040|12481102|IDA  product AUD1; UDP-glucuronate decarboxylase/ catalytic/ dTDP-glucose 4,6-dehydratase  note AUD1; FUNCTIONS IN: UDP-glucuronate decarboxylase activity, catalytic activity, dTDP-glucose 4,6-dehydratase activity; INVOLVED IN: dTDP-rhamnose biosynthetic process, D-xylose metabolic process, nucleotide-sugar metabolic process; LOCATED IN: plasma membrane, membrane, Golgi membrane; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: UXS4 (UDP-XYLOSE SYNTHASE 4); UDP-glucuronate decarboxylase/ catalytic (TAIR:AT2G47650.1); Has 31915 Blast hits to 31888 proteins in 1727 species: Archae - 501; Bacteria - 14631; Metazoa - 650; Fungi - 223; Plants - 787; Viruses - 36; Other Eukaryotes - 15087 (source: NCBI BLink).  protein_id AT3G62830.1p  transcript_id AT3G62830.1  protein_id AT3G62830.1p  transcript_id AT3G62830.1  
At3g62830	chr3:023232539	0.0	W/23232539-23233156,23233239-23233386,23233903-23233982,23234075-23234158,23234252-23234326,23234929-23235021,23235114-23235353	AT3G62830.2  CDS  gene_syn ATUXS2, AUD1, UDP-GLUCURONIC ACID DECARBOXYLASE 2, UXS2  gene AUD1  function encodes an isoform of UDP-glucuronic acid decarboxylase, which is predicted to be membrane-bound by PSORT. This enzyme produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component Golgi membrane|GO:0000139|15655675|IDA  go_component membrane|GO:0016020|12481102|TAS  go_process nucleotide-sugar metabolic process|GO:0009225||ISS  go_process dTDP-rhamnose biosynthetic process|GO:0019305|11554483|ISS  go_process D-xylose metabolic process|GO:0042732|12481102|IDA  go_function catalytic activity|GO:0003824||ISS  go_function dTDP-glucose 4,6-dehydratase activity|GO:0008460|11554483|ISS  go_function UDP-glucuronate decarboxylase activity|GO:0048040|12481102|IDA  product AUD1; UDP-glucuronate decarboxylase/ catalytic/ dTDP-glucose 4,6-dehydratase  note UDP-GLUCURONIC ACID DECARBOXYLASE 2 (UXS2); FUNCTIONS IN: UDP-glucuronate decarboxylase activity, catalytic activity, dTDP-glucose 4,6-dehydratase activity; INVOLVED IN: dTDP-rhamnose biosynthetic process, D-xylose metabolic process, nucleotide-sugar metabolic process; LOCATED IN: plasma membrane, membrane, Golgi membrane; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: UXS4 (UDP-XYLOSE SYNTHASE 4); UDP-glucuronate decarboxylase/ catalytic (TAIR:AT2G47650.1); Has 31915 Blast hits to 31888 proteins in 1727 species: Archae - 501; Bacteria - 14631; Metazoa - 650; Fungi - 223; Plants - 787; Viruses - 36; Other Eukaryotes - 15087 (source: NCBI BLink).  protein_id AT3G62830.2p  transcript_id AT3G62830.2  protein_id AT3G62830.2p  transcript_id AT3G62830.2  
At3g62840	chr3:023236611	0.0	C/23236611-23236615,23236488-23236512,23235932-23236111,23235727-23235843	AT3G62840.2  CDS  gene_syn F26K9.270  go_component nucleus|GO:0005634||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; LOCATED IN: small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative (TAIR:AT2G47640.3); Has 537 Blast hits to 537 proteins in 165 species: Archae - 2; Bacteria - 0; Metazoa - 239; Fungi - 109; Plants - 78; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).  protein_id AT3G62840.2p  transcript_id AT3G62840.2  protein_id AT3G62840.2p  transcript_id AT3G62840.2  
At3g62840	chr3:023236611	0.0	C/23236611-23236615,23236488-23236512,23235932-23236114,23235727-23235843	AT3G62840.1  CDS  gene_syn F26K9.270  go_component nucleus|GO:0005634||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; LOCATED IN: small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative (TAIR:AT2G47640.4); Has 535 Blast hits to 535 proteins in 164 species: Archae - 2; Bacteria - 0; Metazoa - 239; Fungi - 109; Plants - 78; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT3G62840.1p  transcript_id AT3G62840.1  protein_id AT3G62840.1p  transcript_id AT3G62840.1  
At3g62850	chr3:023238903	0.0	C/23238903-23239155,23238445-23238815,23238057-23238357,23237487-23237980	AT3G62850.1  CDS  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc finger protein-related  note zinc finger protein-related; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62200.1); Has 254 Blast hits to 154 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 45; Fungi - 2; Plants - 207; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G62850.1p  transcript_id AT3G62850.1  protein_id AT3G62850.1p  transcript_id AT3G62850.1  
At3g62860	chr3:023242114	0.0	C/23242114-23242143,23241887-23241977,23241734-23241766,23240606-23240752,23240386-23240516,23240125-23240262,23239577-23240053	AT3G62860.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_function catalytic activity|GO:0003824||ISS  product esterase/lipase/thioesterase family protein  note esterase/lipase/thioesterase family protein; FUNCTIONS IN: catalytic activity; LOCATED IN: plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: esterase/lipase/thioesterase family protein (TAIR:AT2G47630.1); Has 1831 Blast hits to 1827 proteins in 622 species: Archae - 17; Bacteria - 1077; Metazoa - 101; Fungi - 78; Plants - 244; Viruses - 47; Other Eukaryotes - 267 (source: NCBI BLink).  protein_id AT3G62860.1p  transcript_id AT3G62860.1  protein_id AT3G62860.1p  transcript_id AT3G62860.1  
At3g62870	chr3:023244271	0.0	C/23244271-23244273,23243981-23244022,23243674-23243875,23243294-23243592,23243098-23243190,23242862-23242993	AT3G62870.1  CDS  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 60S ribosomal protein L7A (RPL7aB)  note 60S ribosomal protein L7A (RPL7aB); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L7A (InterPro:IPR001921), Ribosomal protein L7A/RS6 family (InterPro:IPR018492), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038), Ribosomal protein L7Ae conserved site (InterPro:IPR004037); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L7A (RPL7aA) (TAIR:AT2G47610.1); Has 1582 Blast hits to 1582 proteins in 296 species: Archae - 222; Bacteria - 0; Metazoa - 625; Fungi - 248; Plants - 154; Viruses - 0; Other Eukaryotes - 333 (source: NCBI BLink).  protein_id AT3G62870.1p  transcript_id AT3G62870.1  protein_id AT3G62870.1p  transcript_id AT3G62870.1  
At3g62880	chr3:023245931	0.0	C/23245931-23246002,23245797-23245848,23245648-23245713,23245103-23245323	AT3G62880.1  CDS  gene_syn ATOEP16-4  gene ATOEP16-4  function Homologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family.  go_process protein transport|GO:0015031||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744||ISS  go_component plastid outer membrane|GO:0009527|14769929|ISS  go_process protein transport|GO:0015031||ISS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product ATOEP16-4; P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter  note ATOEP16-4; FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: plastid outer membrane, mitochondrial inner membrane presequence translocase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial import inner membrane translocase, subunit Tim17/22 (InterPro:IPR003397); Has 132 Blast hits to 132 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G62880.1p  transcript_id AT3G62880.1  protein_id AT3G62880.1p  transcript_id AT3G62880.1  
At3g62880	chr3:023245931	0.0	C/23245931-23246002,23245797-23245848,23245648-23245713,23245103-23245323	AT3G62880.2  CDS  gene_syn ATOEP16-4  gene ATOEP16-4  function Homologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family.  go_process protein transport|GO:0015031||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744||ISS  go_component plastid outer membrane|GO:0009527|14769929|ISS  go_process protein transport|GO:0015031||ISS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product ATOEP16-4; P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter  note ATOEP16-4; FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: plastid outer membrane, mitochondrial inner membrane presequence translocase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial import inner membrane translocase, subunit Tim17/22 (InterPro:IPR003397); Has 132 Blast hits to 132 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G62880.2p  transcript_id AT3G62880.2  protein_id AT3G62880.2p  transcript_id AT3G62880.2  
At3g62890	chr3:023246168	0.0	W/23246168-23247460,23247545-23247973	AT3G62890.1  CDS  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40405.1); Has 12723 Blast hits to 4910 proteins in 141 species: Archae - 0; Bacteria - 6; Metazoa - 34; Fungi - 21; Plants - 12471; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink).  protein_id AT3G62890.1p  transcript_id AT3G62890.1  protein_id AT3G62890.1p  transcript_id AT3G62890.1  
At3g62895	chr3:023248129	0.0	C/23248129-23249097	AT3G62895.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G62895.1  
At3g62900	chr3:023254682	0.0	C/23254682-23254810,23254044-23254116,23253833-23253963,23253397-23253747,23252157-23253307,23250275-23251991,23250026-23250189,23249779-23249939,23249581-23249693,23249181-23249372	AT3G62900.1  CDS  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: trichome; CONTAINS InterPro DOMAIN/s: Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02990.2); Has 1595 Blast hits to 1193 proteins in 144 species: Archae - 0; Bacteria - 52; Metazoa - 958; Fungi - 109; Plants - 39; Viruses - 0; Other Eukaryotes - 437 (source: NCBI BLink).  protein_id AT3G62900.1p  transcript_id AT3G62900.1  protein_id AT3G62900.1p  transcript_id AT3G62900.1  
At3g62907	chr3:023256847	0.0	C/23256847-23256960	AT3G62907.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G62907.1p  transcript_id AT3G62907.1  protein_id AT3G62907.1p  transcript_id AT3G62907.1  
At3g62910	chr3:023260228	0.0	C/23260228-23260386,23260085-23260141,23259925-23260005,23259793-23259850,23259599-23259702,23259433-23259484,23259237-23259286,23258961-23259026,23258672-23258836,23258499-23258571,23258289-23258421,23258133-23258190,23257988-23258035,23257829-23257912,23257661-23257741	AT3G62910.1  CDS  gene_syn ALBINO AND PALE GREEN, APG3  gene APG3  function Isolated in a screen for chloroplast development mutants. Pale green, albino seedlings arrest early in seedling development.  go_component cytoplasm|GO:0005737||IEA  go_component chloroplast|GO:0009507||IEA  go_function translation release factor activity|GO:0003747||IEA  go_function translation release factor activity, codon specific|GO:0016149||IEA  go_process translational termination|GO:0006415||ISS  go_process chloroplast organization|GO:0009658||NAS  go_function translation release factor activity|GO:0003747||ISS  product APG3 (ALBINO AND PALE GREEN); translation release factor/ translation release factor, codon specific  note ALBINO AND PALE GREEN (APG3); FUNCTIONS IN: translation release factor activity, codon specific, translation release factor activity; INVOLVED IN: translational termination, chloroplast organization; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptide chain release factor 1 (InterPro:IPR004373), Class I peptide chain release factor (InterPro:IPR000352), Peptide chain release factor (InterPro:IPR005139); BEST Arabidopsis thaliana protein match is: peptide chain release factor, putative (TAIR:AT2G47020.1); Has 12007 Blast hits to 12005 proteins in 1577 species: Archae - 0; Bacteria - 5581; Metazoa - 222; Fungi - 135; Plants - 100; Viruses - 10; Other Eukaryotes - 5959 (source: NCBI BLink).  protein_id AT3G62910.1p  transcript_id AT3G62910.1  protein_id AT3G62910.1p  transcript_id AT3G62910.1  
At3g62920	chr3:023260717	0.0	W/23260717-23260766,23260979-23261171	AT3G62920.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; Has 11 Blast hits to 11 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G62920.1p  transcript_id AT3G62920.1  protein_id AT3G62920.1p  transcript_id AT3G62920.1  
At3g62930	chr3:023261538	0.0	C/23261538-23261846	AT3G62930.1  CDS  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  go_component cellular_component|GO:0005575||ND  go_function arsenate reductase (glutaredoxin) activity|GO:0008794||ISS  product glutaredoxin family protein  note glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutaredoxin subgroup (InterPro:IPR014025), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin family protein (TAIR:AT1G03020.1); Has 915 Blast hits to 913 proteins in 165 species: Archae - 0; Bacteria - 10; Metazoa - 279; Fungi - 172; Plants - 418; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT3G62930.1p  transcript_id AT3G62930.1  protein_id AT3G62930.1p  transcript_id AT3G62930.1  
At3g62940	chr3:023264139	0.0	C/23264139-23264197,23263106-23263997	AT3G62940.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function cysteine-type peptidase activity|GO:0008234||ISS  product OTU-like cysteine protease family protein  note OTU-like cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: SEC-C motif-containing protein / OTU-like cysteine protease family protein (TAIR:AT5G67170.1); Has 4021 Blast hits to 3036 proteins in 351 species: Archae - 8; Bacteria - 372; Metazoa - 1241; Fungi - 381; Plants - 156; Viruses - 19; Other Eukaryotes - 1844 (source: NCBI BLink).  protein_id AT3G62940.1p  transcript_id AT3G62940.1  protein_id AT3G62940.1p  transcript_id AT3G62940.1  
At3g62940	chr3:023264139	0.0	C/23264139-23264245,23263106-23263997	AT3G62940.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function cysteine-type peptidase activity|GO:0008234||ISS  product OTU-like cysteine protease family protein  note OTU-like cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: SEC-C motif-containing protein / OTU-like cysteine protease family protein (TAIR:AT5G67170.1); Has 5280 Blast hits to 3831 proteins in 401 species: Archae - 14; Bacteria - 464; Metazoa - 1693; Fungi - 489; Plants - 179; Viruses - 21; Other Eukaryotes - 2420 (source: NCBI BLink).  protein_id AT3G62940.2p  transcript_id AT3G62940.2  protein_id AT3G62940.2p  transcript_id AT3G62940.2  
At3g62950	chr3:023266303	0.0	W/23266303-23266614	AT3G62950.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  product glutaredoxin family protein  note glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutaredoxin active site (InterPro:IPR011767), Glutaredoxin subgroup (InterPro:IPR014025), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin family protein (TAIR:AT2G47870.1); Has 992 Blast hits to 990 proteins in 247 species: Archae - 0; Bacteria - 203; Metazoa - 213; Fungi - 116; Plants - 419; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT3G62950.1p  transcript_id AT3G62950.1  protein_id AT3G62950.1p  transcript_id AT3G62950.1  
At3g62960	chr3:023268780	0.0	W/23268780-23269088	AT3G62960.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  product glutaredoxin family protein  note glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutaredoxin active site (InterPro:IPR011767), Glutaredoxin subgroup (InterPro:IPR014025), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin family protein (TAIR:AT2G47880.1); Has 829 Blast hits to 827 proteins in 174 species: Archae - 0; Bacteria - 64; Metazoa - 208; Fungi - 99; Plants - 412; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT3G62960.1p  transcript_id AT3G62960.1  protein_id AT3G62960.1p  transcript_id AT3G62960.1  
At3g62970	chr3:023270636	0.0	W/23270636-23270736,23270822-23270909,23271002-23271058,23271135-23271167,23271252-23271329,23271435-23271478,23271564-23271604,23271949-23272031,23272121-23272212,23272297-23272366,23272433-23272471,23272561-23272698	AT3G62970.1  CDS  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CTCHY-type (InterPro:IPR017921), Zinc finger, CHY-type (InterPro:IPR008913), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G18650.1); Has 564 Blast hits to 561 proteins in 122 species: Archae - 0; Bacteria - 2; Metazoa - 225; Fungi - 97; Plants - 140; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).  protein_id AT3G62970.1p  transcript_id AT3G62970.1  protein_id AT3G62970.1p  transcript_id AT3G62970.1  
At3g62980	chr3:023275715	0.0	C/23275715-23276181,23274489-23274981,23273479-23274303	AT3G62980.1  CDS  gene_syn TIR1, TRANSPORT INHIBITOR RESPONSE 1  gene TIR1  function Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation.  go_component ubiquitin ligase complex|GO:0000151|10398681|IDA  go_component SCF ubiquitin ligase complex|GO:0019005|10398681|IDA  go_process response to molecule of bacterial origin|GO:0002237|16627744|IEP  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process response to auxin stimulus|GO:0009733|9436980|IMP  go_process pollen maturation|GO:0010152|18628351|IGI  go_process lateral root formation|GO:0010311|9436980|IMP  go_process cellular response to phosphate starvation|GO:0016036|19106375|IEP  go_process stamen development|GO:0048443|18628351|IGI  go_function ubiquitin-protein ligase activity|GO:0004842|10398681|IC  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|10398681|IPI  go_function protein binding|GO:0005515|15917798|IPI  go_function auxin binding|GO:0010011|15917797|IGI  product TIR1 (TRANSPORT INHIBITOR RESPONSE 1); auxin binding / protein binding / ubiquitin-protein ligase  note TRANSPORT INHIBITOR RESPONSE 1 (TIR1); FUNCTIONS IN: auxin binding, ubiquitin-protein ligase activity, protein binding; INVOLVED IN: in 7 processes; LOCATED IN: SCF ubiquitin ligase complex, ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: GRH1 (GRR1-LIKE PROTEIN 1); auxin binding / protein binding / ubiquitin-protein ligase (TAIR:AT4G03190.1); Has 1776 Blast hits to 1341 proteins in 105 species: Archae - 0; Bacteria - 2; Metazoa - 817; Fungi - 42; Plants - 832; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT3G62980.1p  transcript_id AT3G62980.1  protein_id AT3G62980.1p  transcript_id AT3G62980.1  
At3g62988	chr3:023281908	0.0	C/23281908-23282081	AT3G62988.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G62988.1p  transcript_id AT3G62988.1  protein_id AT3G62988.1p  transcript_id AT3G62988.1  
At3g62990	chr3:023282803	0.0	W/23282803-23283207	AT3G62990.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G47950.1); Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G62990.1p  transcript_id AT3G62990.1  protein_id AT3G62990.1p  transcript_id AT3G62990.1  
At3g63000	chr3:023283836	0.0	W/23283836-23284822,23285103-23285357	AT3G63000.1  CDS  gene_syn NPL4-LIKE PROTEIN 1, NPL41  gene NPL41  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NPL41 (NPL4-LIKE PROTEIN 1)  note NPL4-LIKE PROTEIN 1 (NPL41); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NPL4 (InterPro:IPR007717); BEST Arabidopsis thaliana protein match is: NPL4 family protein (TAIR:AT2G47970.1); Has 296 Blast hits to 296 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 86; Plants - 37; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT3G63000.1p  transcript_id AT3G63000.1  protein_id AT3G63000.1p  transcript_id AT3G63000.1  
At3g63003	chr3:023285593	0.0	C/23285593-23285665	AT3G63003.1  tRNA  gene_syn 67324.TRNA-ALA-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: TGC)  transcript_id AT3G63003.1  
At3g63006	chr3:023285754	0.0	C/23285754-23285826	AT3G63006.1  tRNA  gene_syn 67324.TRNA-ALA-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: TGC)  transcript_id AT3G63006.1  
At3g63010	chr3:023289717	0.0	W/23289717-23289755,23289961-23290998	AT3G63010.1  CDS  gene_syn ATGID1B, GA INSENSITIVE DWARF1B, GID1B  gene GID1B  function Encodes a gibberellin (GA) receptor ortholog of the rice GA receptor gene (OsGID1). Has GA-binding activity, showing higher affinity to GA4. Interacts with DELLA proteins in vivo in the presence of GA4.  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process response to gibberellin stimulus|GO:0009739|17933900|IEP  go_process response to gibberellin stimulus|GO:0009739|18827182|IGI  go_process positive regulation of gibberellic acid mediated signaling|GO:0009939|17194763|IGI  go_process raffinose family oligosaccharide biosynthetic process|GO:0010325|16709201|IGI  go_process gibberellin-mediated signaling|GO:0010476|17521411|IGI  go_process floral organ morphogenesis|GO:0048444|17194763|IGI  product GID1B (GA INSENSITIVE DWARF1B); hydrolase  note GA INSENSITIVE DWARF1B (GID1B); FUNCTIONS IN: hydrolase activity; INVOLVED IN: raffinose family oligosaccharide biosynthetic process, floral organ morphogenesis, positive regulation of gibberellic acid mediated signaling, response to gibberellin stimulus, gibberellin-mediated signaling; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDXG, active site (InterPro:IPR002168), Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: GID1C (GA INSENSITIVE DWARF1C); hydrolase (TAIR:AT5G27320.1); Has 5663 Blast hits to 5652 proteins in 870 species: Archae - 47; Bacteria - 2958; Metazoa - 493; Fungi - 441; Plants - 650; Viruses - 5; Other Eukaryotes - 1069 (source: NCBI BLink).  protein_id AT3G63010.1p  transcript_id AT3G63010.1  protein_id AT3G63010.1p  transcript_id AT3G63010.1  
At3g63020	chr3:023294416	0.0	W/23294416-23294641,23294714-23295039	AT3G63020.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; Has 8 Blast hits to 8 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G63020.2p  transcript_id AT3G63020.2  protein_id AT3G63020.2p  transcript_id AT3G63020.2  
At3g63020	chr3:023294425	0.0	W/23294425-23295039	AT3G63020.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; Has 8 Blast hits to 8 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G63020.1p  transcript_id AT3G63020.1  protein_id AT3G63020.1p  transcript_id AT3G63020.1  
At3g63030	chr3:023295394	0.0	W/23295394-23295441,23295913-23296425	AT3G63030.1  CDS  gene_syn MBD4  gene MBD4  function Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.  go_component nucleus|GO:0005634||IEA  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  go_function methyl-CpG binding|GO:0008327|12787239|ISS  go_function DNA demethylase activity|GO:0051747|12787239|IDA  product MBD4; DNA binding / DNA demethylase/ methyl-CpG binding  note MBD4; FUNCTIONS IN: DNA demethylase activity, methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: MBD1; DNA binding / DNA demethylase/ methyl-CpG binding (TAIR:AT4G22745.1); Has 99 Blast hits to 98 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 36; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G63030.1p  transcript_id AT3G63030.1  protein_id AT3G63030.1p  transcript_id AT3G63030.1  
At3g63040	chr3:023296646	0.0	C/23296646-23297209	AT3G63040.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G63040.1p  transcript_id AT3G63040.1  protein_id AT3G63040.1p  transcript_id AT3G63040.1  
At3g63050	chr3:023297950	0.0	C/23297950-23298372	AT3G63050.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G48075.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G63050.1p  transcript_id AT3G63050.1  protein_id AT3G63050.1p  transcript_id AT3G63050.1  
At3g63052	chr3:023298911	0.0	C/23298911-23299111	AT3G63052.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G63052.1p  transcript_id AT3G63052.1  protein_id AT3G63052.1p  transcript_id AT3G63052.1  
At3g63060	chr3:023300638	0.0	C/23300638-23301456	AT3G63060.1  CDS  gene_syn EDL3, EID1-like 3  gene EDL3  product EDL3 (EID1-like 3)  note EID1-like 3 (EDL3); EXPRESSED IN: stamen; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: EDL2 (EID1-like 2) (TAIR:AT5G39360.1); Has 62 Blast hits to 62 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G63060.1p  transcript_id AT3G63060.1  protein_id AT3G63060.1p  transcript_id AT3G63060.1  
At3g63070	chr3:023302667	0.0	W/23302667-23302789,23303256-23303332,23304148-23306193,23306641-23307049,23307502-23307610,23307693-23307805,23307875-23308059,23308141-23308558,23308651-23309008,23309163-23309342,23309550-23309575	AT3G63070.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product PWWP domain-containing protein  note PWWP domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Regulation of nuclear pre-mRNA protein (InterPro:IPR006569), PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G48160.1); Has 977 Blast hits to 907 proteins in 123 species: Archae - 0; Bacteria - 34; Metazoa - 607; Fungi - 134; Plants - 84; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).  protein_id AT3G63070.1p  transcript_id AT3G63070.1  protein_id AT3G63070.1p  transcript_id AT3G63070.1  
At3g63080	chr3:023310161	0.0	W/23310161-23310220,23310314-23310390,23310479-23310540,23310680-23310798,23310910-23311077,23311165-23311200	AT3G63080.1  CDS  gene_syn ATGPX5, MEE42, glutathione peroxidase 5, maternal effect embryo arrest 42  gene ATGPX5  function Encodes glutathione peroxidase.  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function glutathione peroxidase activity|GO:0004602||IEA  go_component endoplasmic reticulum|GO:0005783|14617062|ISS  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function glutathione peroxidase activity|GO:0004602||ISS  product ATGPX5 (glutathione peroxidase 5); glutathione peroxidase  note glutathione peroxidase 5 (ATGPX5); FUNCTIONS IN: glutathione peroxidase activity; INVOLVED IN: embryonic development ending in seed dormancy, N-terminal protein myristoylation; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336), Glutathione peroxidase (InterPro:IPR000889); BEST Arabidopsis thaliana protein match is: ATGPX4 (GLUTATHIONE PEROXIDASE 4); glutathione peroxidase (TAIR:AT2G48150.1); Has 5332 Blast hits to 5331 proteins in 1010 species: Archae - 0; Bacteria - 1893; Metazoa - 684; Fungi - 136; Plants - 239; Viruses - 8; Other Eukaryotes - 2372 (source: NCBI BLink).  protein_id AT3G63080.1p  transcript_id AT3G63080.1  protein_id AT3G63080.1p  transcript_id AT3G63080.1  
At3g63088	chr3:023313053	0.0	W/23313053-23313199	AT3G63088.1  CDS  gene_syn DEVIL 14, DVL14, ROTUNDIFOLIA LIKE 14, RTFL14  gene RTFL14  go_component cellular_component|GO:0005575||ND  go_process shoot development|GO:0048367|14871303|ISS  go_function molecular_function|GO:0003674||ND  product RTFL14 (ROTUNDIFOLIA LIKE 14)  note ROTUNDIFOLIA LIKE 14 (RTFL14); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: shoot development; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G63088.1p  transcript_id AT3G63088.1  protein_id AT3G63088.1p  transcript_id AT3G63088.1  
At3g63090	chr3:023313617	0.0	W/23313617-23314831	AT3G63090.1  CDS  go_component intracellular|GO:0005622||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  product ubiquitin thiolesterase  note ubiquitin thiolesterase; FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (InterPro:IPR001578); BEST Arabidopsis thaliana protein match is: ubiquitin thiolesterase (TAIR:AT2G31290.2); Has 214 Blast hits to 214 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 214; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G63090.1p  transcript_id AT3G63090.1  protein_id AT3G63090.1p  transcript_id AT3G63090.1  
At3g63095	chr3:023315506	0.0	W/23315506-23316258	AT3G63095.1  CDS  function Encodes a Protease inhibitor/seed storage/LTP family protein  product unknown protein  note Has 75990 Blast hits to 21187 proteins in 1108 species: Archae - 236; Bacteria - 18060; Metazoa - 15345; Fungi - 6429; Plants - 2876; Viruses - 637; Other Eukaryotes - 32407 (source: NCBI BLink).  protein_id AT3G63095.1p  transcript_id AT3G63095.1  protein_id AT3G63095.1p  transcript_id AT3G63095.1  
At3g63110	chr3:023318437	0.0	C/23318437-23319447	AT3G63110.1  CDS  gene_syn ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 3, ATIPT3, IPT3, ISOPENTENYLTRANSFERASE 3  gene ATIPT3  function Encodes cytokinin synthase involved in cytokinin biosynthesis. IPT3 subcellular localization is modulated by farnesylation- when farnesylated it is localized to the nucleus, otherwise to the chloroplast.  go_function tRNA isopentenyltransferase activity|GO:0004811||IEA  go_function ATP binding|GO:0005524||IEA  go_component nucleus|GO:0005634|18184738|IDA  go_component plastid|GO:0009536|18184738|IDA  go_process cytokinin biosynthetic process|GO:0009691|17062755|IGI  go_process cytokinin biosynthetic process|GO:0009691|18184738|IMP  go_function transferase activity, transferring alkyl or aryl (other than methyl) groups|GO:0016765||ISS  product ATIPT3 (ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 3); ATP binding / tRNA isopentenyltransferase/ transferase, transferring alkyl or aryl (other than methyl) groups  note ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 3 (ATIPT3); FUNCTIONS IN: transferase activity, transferring alkyl or aryl (other than methyl) groups, tRNA isopentenyltransferase activity, ATP binding; INVOLVED IN: cytokinin biosynthetic process; LOCATED IN: nucleus, plastid; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: tRNA isopentenyltransferase (InterPro:IPR002627); BEST Arabidopsis thaliana protein match is: IPT5; ATP binding / tRNA isopentenyltransferase/ transferase, transferring alkyl or aryl (other than methyl) groups (TAIR:AT5G19040.1); Has 5182 Blast hits to 4986 proteins in 1452 species: Archae - 0; Bacteria - 2710; Metazoa - 160; Fungi - 143; Plants - 188; Viruses - 0; Other Eukaryotes - 1981 (source: NCBI BLink).  protein_id AT3G63110.1p  transcript_id AT3G63110.1  protein_id AT3G63110.1p  transcript_id AT3G63110.1  
At3g63120	chr3:023323493	0.0	C/23323493-23323893,23323143-23323407	AT3G63120.1  CDS  gene_syn CYCP1;1, cyclin p1;1  gene CYCP1;1  go_component cellular_component|GO:0005575||ND  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase activity|GO:0004693||ISS  product CYCP1;1 (cyclin p1;1); cyclin-dependent protein kinase  note cyclin p1;1 (CYCP1;1); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Negative regulatory factor PREG (InterPro:IPR012389), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin-related 2 (InterPro:IPR013922), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCP4;1 (cyclin p4;1); cyclin-dependent protein kinase (TAIR:AT2G44740.1); Has 851 Blast hits to 849 proteins in 166 species: Archae - 0; Bacteria - 16; Metazoa - 221; Fungi - 291; Plants - 128; Viruses - 0; Other Eukaryotes - 195 (source: NCBI BLink).  protein_id AT3G63120.1p  transcript_id AT3G63120.1  protein_id AT3G63120.1p  transcript_id AT3G63120.1  
At3g63130	chr3:023325108	0.0	W/23325108-23326715	AT3G63130.1  CDS  gene_syn RAN GTPASE ACTIVATING PROTEIN 1, RANGAP1  gene RANGAP1  function Encodes a RAN GTPase activating protein involved in nuclear import, cell plate formation and mitotic spindle formation.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component cell division site|GO:0032153|19011093|IDA  go_process cytokinesis|GO:0000910|19011093|IMP  go_function protein binding|GO:0005515||IEA  go_component nuclear envelope|GO:0005635|12061901|IDA  go_component nuclear envelope|GO:0005635|17600715|IDA  go_component cell plate|GO:0009504|15807788|IDA  go_component cell plate|GO:0009504|17600715|IDA  go_process M phase specific microtubule process|GO:0000072|12061901|TAS  go_process protein import into nucleus|GO:0006606|12061901|TAS  go_function RAN GTPase activator activity|GO:0005098||ISS  product RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1); RAN GTPase activator/ protein binding  note RAN GTPASE ACTIVATING PROTEIN 1 (RANGAP1); FUNCTIONS IN: RAN GTPase activator activity, protein binding; INVOLVED IN: M phase specific microtubule process, protein import into nucleus, cytokinesis; LOCATED IN: nuclear envelope, plasma membrane, chloroplast, cell division site, cell plate; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2); RAN GTPase activator (TAIR:AT5G19320.1); Has 9253 Blast hits to 4365 proteins in 218 species: Archae - 0; Bacteria - 434; Metazoa - 4689; Fungi - 175; Plants - 314; Viruses - 0; Other Eukaryotes - 3641 (source: NCBI BLink).  protein_id AT3G63130.1p  transcript_id AT3G63130.1  protein_id AT3G63130.1p  transcript_id AT3G63130.1  
At3g63140	chr3:023328225	0.0	C/23328225-23328620,23328027-23328148,23327822-23327924,23327616-23327754,23327267-23327544,23327006-23327188	AT3G63140.1  CDS  gene_syn CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA, CSP41A  gene CSP41A  function Encodes a protein with ribonuclease activity that is involved in plastid rRNA maturation.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_component plastoglobule|GO:0010287|16461379|IDA  go_process rRNA processing|GO:0006364|18398686|IGI  go_function mRNA binding|GO:0003729||ISS  go_function poly(U) binding|GO:0008266|17511964|IDA  product CSP41A (CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA); mRNA binding / poly(U) binding  note CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA (CSP41A); FUNCTIONS IN: mRNA binding, poly(U) binding; INVOLVED IN: rRNA processing; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: CRB (CHLOROPLAST RNA BINDING); binding / catalytic/ coenzyme binding (TAIR:AT1G09340.1); Has 698 Blast hits to 697 proteins in 216 species: Archae - 38; Bacteria - 385; Metazoa - 5; Fungi - 7; Plants - 61; Viruses - 0; Other Eukaryotes - 202 (source: NCBI BLink).  protein_id AT3G63140.1p  transcript_id AT3G63140.1  protein_id AT3G63140.1p  transcript_id AT3G63140.1  
At3g63150	chr3:023332481	0.0	C/23332481-23332692,23332219-23332351,23331974-23332123,23331597-23331773,23331267-23331518,23331067-23331135,23330887-23330942,23330592-23330673,23330257-23330468,23330076-23330145,23329860-23329972,23329629-23329779,23329358-23329544,23329200-23329267	AT3G63150.1  CDS  gene_syn ATCBG, CALCIUM BINDING GTP-ASE, MIRO-RELATED GTP-ASE 2, MIRO2  gene MIRO2  function Encodes a calcium binding GTPases that is localized to the mitochondrion and is involved in salt stress response.  go_component mitochondrion|GO:0005739|18344283|IDA  go_process response to abscisic acid stimulus|GO:0009737|16832621|IMP  go_function GTPase activity|GO:0003924|16832621|IDA  go_function calcium ion binding|GO:0005509|16832621|IDA  product MIRO2 (MIRO-RELATED GTP-ASE 2); GTPase/ calcium ion binding  note MIRO-RELATED GTP-ASE 2 (MIRO2); FUNCTIONS IN: GTPase activity, calcium ion binding; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: mitochondrion; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF hand associated, type-1 (InterPro:IPR013566), Ras small GTPase, Rho type (InterPro:IPR003578), EF hand associated, type-2 (InterPro:IPR013567), Miro-like (InterPro:IPR013684), Ras GTPase (InterPro:IPR001806), Ras small GTPase, Rab type (InterPro:IPR003579), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: MIRO1 (Miro-related GTP-ase 1); GTP binding (TAIR:AT5G27540.2); Has 4620 Blast hits to 4610 proteins in 257 species: Archae - 0; Bacteria - 11; Metazoa - 2699; Fungi - 827; Plants - 518; Viruses - 0; Other Eukaryotes - 565 (source: NCBI BLink).  protein_id AT3G63150.1p  transcript_id AT3G63150.1  protein_id AT3G63150.1p  transcript_id AT3G63150.1  
At3g63160	chr3:023333773	0.0	C/23333773-23333982	AT3G63160.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast outer membrane|GO:0009707|12766230|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast outer membrane, thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G63160.1p  transcript_id AT3G63160.1  protein_id AT3G63160.1p  transcript_id AT3G63160.1  
At3g63170	chr3:023334675	0.0	W/23334675-23335029,23335327-23335576,23335673-23335764,23335851-23335993	AT3G63170.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process flavonoid biosynthetic process|GO:0009813||IEA  go_function chalcone isomerase activity|GO:0045430||IEA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  product chalcone isomerase  note chalcone isomerase; FUNCTIONS IN: chalcone isomerase activity; INVOLVED IN: flavonoid biosynthetic process; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone isomerase, subgroup (InterPro:IPR003466), Chalcone isomerase (InterPro:IPR016087); BEST Arabidopsis thaliana protein match is: chalcone isomerase (TAIR:AT2G26310.1); Has 67 Blast hits to 67 proteins in 17 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT3G63170.1p  transcript_id AT3G63170.1  protein_id AT3G63170.1p  transcript_id AT3G63170.1  
At3g63180	chr3:023340077	0.0	C/23340077-23340161,23339703-23339990,23339514-23339614,23339119-23339438,23338945-23339020,23338793-23338861,23338514-23338709,23338340-23338409,23338187-23338253,23337762-23338073,23336318-23337646	AT3G63180.2  CDS  gene_syn ATTKL, TIC-LIKE, TICKLE, TKL  gene TKL  product TKL (TIC-LIKE)  note TIC-LIKE (TKL); EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: TIC (TIME FOR COFFEE) (TAIR:AT3G22380.2); Has 1769 Blast hits to 1121 proteins in 182 species: Archae - 0; Bacteria - 120; Metazoa - 676; Fungi - 271; Plants - 58; Viruses - 3; Other Eukaryotes - 641 (source: NCBI BLink).  protein_id AT3G63180.2p  transcript_id AT3G63180.2  protein_id AT3G63180.2p  transcript_id AT3G63180.2  
At3g63180	chr3:023340077	0.0	C/23340077-23340161,23339703-23339990,23339514-23339614,23339119-23339438,23338945-23339020,23338793-23338861,23338514-23338709,23338340-23338409,23338187-23338253,23337762-23338097,23336318-23337646	AT3G63180.1  CDS  gene_syn ATTKL, TIC-LIKE, TICKLE, TKL  gene TKL  product TKL (TIC-LIKE)  note TIC-LIKE (TKL); EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: TIC (TIME FOR COFFEE) (TAIR:AT3G22380.2); Has 1844 Blast hits to 1172 proteins in 185 species: Archae - 0; Bacteria - 124; Metazoa - 714; Fungi - 278; Plants - 64; Viruses - 3; Other Eukaryotes - 661 (source: NCBI BLink).  protein_id AT3G63180.1p  transcript_id AT3G63180.1  protein_id AT3G63180.1p  transcript_id AT3G63180.1  
At3g63190	chr3:023344553	0.0	C/23344553-23344640,23344334-23344475,23344184-23344250,23344005-23344100,23343832-23343929,23343626-23343737,23343489-23343530,23343285-23343341,23343147-23343197,23342978-23343034,23342861-23342878	AT3G63190.1  CDS  gene_syn RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR, RRF  gene RRF  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_process translation|GO:0006412||ISS  go_function molecular_function|GO:0003674||ND  product RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR)  note RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR (RRF); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to bacterium, translation; LOCATED IN: thylakoid, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome recycling factor, bacterial-like (InterPro:IPR015998), Ribosome recycling factor (InterPro:IPR002661); BEST Arabidopsis thaliana protein match is: ribosome recycling factor family protein / ribosome releasing factor family protein (TAIR:AT3G01800.1); Has 5492 Blast hits to 5492 proteins in 1475 species: Archae - 0; Bacteria - 2924; Metazoa - 104; Fungi - 52; Plants - 56; Viruses - 0; Other Eukaryotes - 2356 (source: NCBI BLink).  protein_id AT3G63190.1p  transcript_id AT3G63190.1  protein_id AT3G63190.1p  transcript_id AT3G63190.1  
At3g63200	chr3:023346140	0.0	W/23346140-23347084,23347170-23347379	AT3G63200.1  CDS  gene_syn PATATIN-LIKE PROTEIN 9, PLA IIIB, PLP9  gene PLP9  go_process lipid metabolic process|GO:0006629||IEA  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function nutrient reservoir activity|GO:0045735||ISS  product PLP9 (PATATIN-LIKE PROTEIN 9); nutrient reservoir  note PATATIN-LIKE PROTEIN 9 (PLP9); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: metabolic process, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: PLP6 (PATATIN-LIKE PROTEIN 6); nutrient reservoir (TAIR:AT2G39220.1); Has 1162 Blast hits to 1162 proteins in 287 species: Archae - 0; Bacteria - 372; Metazoa - 216; Fungi - 66; Plants - 315; Viruses - 0; Other Eukaryotes - 193 (source: NCBI BLink).  protein_id AT3G63200.1p  transcript_id AT3G63200.1  protein_id AT3G63200.1p  transcript_id AT3G63200.1  
At3g63210	chr3:023354185	0.0	C/23354185-23354906,23354019-23354088	AT3G63210.1  CDS  gene_syn MARD1, MEDIATOR OF ABA-REGULATED DORMANCY 1  gene MARD1  function encodes a novel zinc-finger protein with a proline-rich N-terminus, identical to senescence-associated protein SAG102  go_component cellular_component|GO:0005575||ND  go_process response to abscisic acid stimulus|GO:0009737|15159630|IMP  go_process seed dormancy|GO:0010162|15159630|IMP  go_function molecular_function|GO:0003674||ND  product MARD1  note MARD1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to abscisic acid stimulus, seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: senescence-associated protein-related (TAIR:AT3G22550.1); Has 283 Blast hits to 283 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 283; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G63210.1p  transcript_id AT3G63210.1  protein_id AT3G63210.1p  transcript_id AT3G63210.1  
At3g63220	chr3:023357540	0.0	C/23357540-23358577	AT3G63220.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT1G16250.1); Has 4948 Blast hits to 3279 proteins in 155 species: Archae - 4; Bacteria - 274; Metazoa - 3821; Fungi - 8; Plants - 626; Viruses - 20; Other Eukaryotes - 195 (source: NCBI BLink).  protein_id AT3G63220.1p  transcript_id AT3G63220.1  protein_id AT3G63220.1p  transcript_id AT3G63220.1  
At3g63220	chr3:023357540	0.0	C/23357540-23358598	AT3G63220.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT1G16250.1); Has 4947 Blast hits to 3281 proteins in 155 species: Archae - 4; Bacteria - 274; Metazoa - 3818; Fungi - 8; Plants - 628; Viruses - 20; Other Eukaryotes - 195 (source: NCBI BLink).  protein_id AT3G63220.2p  transcript_id AT3G63220.2  protein_id AT3G63220.2p  transcript_id AT3G63220.2  
At3g63230	chr3:023359633	0.0	W/23359633-23359826,23359942-23360122	AT3G63230.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); Has 138 Blast hits to 138 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G63230.1p  transcript_id AT3G63230.1  protein_id AT3G63230.1p  transcript_id AT3G63230.1  
At3g63233	chr3:023361537	0.0	C/23361537-23361689	AT3G63233.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT3G63233.1p  transcript_id AT3G63233.1  protein_id AT3G63233.1p  transcript_id AT3G63233.1  
At3g63240	chr3:023366847	0.0	C/23366847-23366876,23366672-23366756,23366445-23366519,23366288-23366363,23366107-23366211,23365431-23366025,23365144-23365337,23364962-23365070,23364718-23364866,23364411-23364636	AT3G63240.1  CDS  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product endonuclease/exonuclease/phosphatase family protein  note endonuclease/exonuclease/phosphatase family protein; FUNCTIONS IN: hydrolase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein (TAIR:AT2G32010.1); Has 1575 Blast hits to 1368 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 667; Fungi - 379; Plants - 314; Viruses - 0; Other Eukaryotes - 215 (source: NCBI BLink).  protein_id AT3G63240.1p  transcript_id AT3G63240.1  protein_id AT3G63240.1p  transcript_id AT3G63240.1  
At3g63250	chr3:023371870	0.0	C/23371870-23371974,23371561-23371781,23371260-23371389,23370946-23371149,23370801-23370872,23370575-23370724	AT3G63250.2  CDS  gene_syn ATHMT-2, HMT-2, HMT2, HOMOCYSTEINE METHYLTRANSFERASE 2, HOMOCYSTEINE METHYLTRANSFERASE-2  gene HMT2  function Encodes a homocysteine methyltransferase (HMT). Among the three HMT coding genes in the genome, HMT2 is responsible for a significant proportion of HMT activity in the flower stalks and silique hulls. However, HMT2 does not significantly contribute to the total HMT activity in seeds.  go_component endomembrane system|GO:0012505||IEA  go_process methionine biosynthetic process|GO:0009086|10747987|IDA  go_process S-methylmethionine cycle|GO:0033528|18208517|IMP  go_function homocysteine S-methyltransferase activity|GO:0008898|10747987|IDA  go_function homocysteine S-methyltransferase activity|GO:0008898||ISS  product HMT2 (HOMOCYSTEINE METHYLTRANSFERASE 2); homocysteine S-methyltransferase  note HOMOCYSTEINE METHYLTRANSFERASE 2 (HMT2); FUNCTIONS IN: homocysteine S-methyltransferase activity; INVOLVED IN: methionine biosynthetic process, S-methylmethionine cycle; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homocysteine S-methyltransferase (InterPro:IPR003726); BEST Arabidopsis thaliana protein match is: HMT3; homocysteine S-methyltransferase (TAIR:AT3G22740.1); Has 3823 Blast hits to 3821 proteins in 1017 species: Archae - 4; Bacteria - 2139; Metazoa - 221; Fungi - 97; Plants - 99; Viruses - 0; Other Eukaryotes - 1263 (source: NCBI BLink).  protein_id AT3G63250.2p  transcript_id AT3G63250.2  protein_id AT3G63250.2p  transcript_id AT3G63250.2  
At3g63250	chr3:023372420	0.0	C/23372420-23372587,23371870-23371926,23371561-23371781,23371260-23371389,23370946-23371149,23370801-23370872,23370575-23370724	AT3G63250.1  CDS  gene_syn ATHMT-2, HMT-2, HMT2, HOMOCYSTEINE METHYLTRANSFERASE 2, HOMOCYSTEINE METHYLTRANSFERASE-2  gene HMT2  function Encodes a homocysteine methyltransferase (HMT). Among the three HMT coding genes in the genome, HMT2 is responsible for a significant proportion of HMT activity in the flower stalks and silique hulls. However, HMT2 does not significantly contribute to the total HMT activity in seeds.  go_process methionine biosynthetic process|GO:0009086|10747987|IDA  go_process S-methylmethionine cycle|GO:0033528|18208517|IMP  go_function homocysteine S-methyltransferase activity|GO:0008898|10747987|IDA  go_function homocysteine S-methyltransferase activity|GO:0008898||ISS  product HMT2 (HOMOCYSTEINE METHYLTRANSFERASE 2); homocysteine S-methyltransferase  note HOMOCYSTEINE METHYLTRANSFERASE 2 (HMT2); FUNCTIONS IN: homocysteine S-methyltransferase activity; INVOLVED IN: methionine biosynthetic process, S-methylmethionine cycle; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homocysteine S-methyltransferase (InterPro:IPR003726); BEST Arabidopsis thaliana protein match is: HMT3; homocysteine S-methyltransferase (TAIR:AT3G22740.1); Has 4556 Blast hits to 4552 proteins in 1033 species: Archae - 4; Bacteria - 2227; Metazoa - 297; Fungi - 97; Plants - 99; Viruses - 0; Other Eukaryotes - 1832 (source: NCBI BLink).  protein_id AT3G63250.1p  transcript_id AT3G63250.1  protein_id AT3G63250.1p  transcript_id AT3G63250.1  
At3g63260	chr3:023374423	0.0	C/23374423-23374747,23374197-23374318,23373897-23374108,23373609-23373783,23373327-23373527	AT3G63260.2  CDS  gene_syn ATMRK1  gene ATMRK1  function protein kinase, similar to mammal mixed-lineage kinase and Raf protein kinase  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  go_function kinase activity|GO:0016301||TAS  product ATMRK1; kinase/ protein serine/threonine/tyrosine kinase  note ATMRK1; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), ATMRK serine/threonine protein kinase-like (InterPro:IPR015783), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT3G22750.1); Has 92194 Blast hits to 91144 proteins in 3494 species: Archae - 74; Bacteria - 8137; Metazoa - 40996; Fungi - 7691; Plants - 18301; Viruses - 472; Other Eukaryotes - 16523 (source: NCBI BLink).  protein_id AT3G63260.2p  transcript_id AT3G63260.2  protein_id AT3G63260.2p  transcript_id AT3G63260.2  
At3g63260	chr3:023374423	0.0	C/23374423-23374747,23374197-23374318,23373897-23374108,23373609-23373783,23373393-23373527,23373090-23373296	AT3G63260.1  CDS  gene_syn ATMRK1  gene ATMRK1  function protein kinase, similar to mammal mixed-lineage kinase and Raf protein kinase  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  go_function kinase activity|GO:0016301||TAS  product ATMRK1; kinase/ protein serine/threonine/tyrosine kinase  note ATMRK1; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), ATMRK serine/threonine protein kinase-like (InterPro:IPR015783), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT3G22750.1); Has 93609 Blast hits to 92470 proteins in 3499 species: Archae - 78; Bacteria - 8207; Metazoa - 41644; Fungi - 7809; Plants - 18571; Viruses - 474; Other Eukaryotes - 16826 (source: NCBI BLink).  protein_id AT3G63260.1p  transcript_id AT3G63260.1  protein_id AT3G63260.1p  transcript_id AT3G63260.1  
At3g63270	chr3:023377230	0.0	C/23377230-23377398,23376796-23377040,23375932-23376708	AT3G63270.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55350.1); Has 650 Blast hits to 650 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 353; Fungi - 36; Plants - 260; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT3G63270.1p  transcript_id AT3G63270.1  protein_id AT3G63270.1p  transcript_id AT3G63270.1  
At3g63280	chr3:023378582	0.0	W/23378582-23378667,23378767-23378833,23378945-23379010,23379101-23379147,23379236-23379281,23379368-23379448,23379537-23379579,23379652-23379701,23379770-23379851,23379941-23379990,23380065-23380138,23380218-23380269,23380355-23380753,23380838-23381362	AT3G63280.1  CDS  gene_syn ATNEK4, MAA21.6, NIMA-RELATED KINASE 4, NIMA-RELATED KINASE4  gene ATNEK4  function Encodes AtNek4, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes.  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product ATNEK4 (NIMA-RELATED KINASE 4); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note NIMA-RELATED KINASE 4 (ATNEK4); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATNEK2 (NIMA-RELATED KINASE 2); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT3G04810.2); Has 92489 Blast hits to 90775 proteins in 2928 species: Archae - 54; Bacteria - 8181; Metazoa - 40097; Fungi - 8438; Plants - 17716; Viruses - 479; Other Eukaryotes - 17524 (source: NCBI BLink).  protein_id AT3G63280.1p  transcript_id AT3G63280.1  protein_id AT3G63280.1p  transcript_id AT3G63280.1  
At3g63280	chr3:023378582	0.0	W/23378582-23378667,23378767-23378833,23378945-23379010,23379101-23379147,23379236-23379281,23379368-23379448,23379537-23379579,23379652-23379701,23379770-23379851,23379941-23379990,23380065-23380138,23380218-23380269,23380355-23380753,23380838-23381362	AT3G63280.2  CDS  gene_syn ATNEK4, MAA21.6, NIMA-RELATED KINASE 4, NIMA-RELATED KINASE4  gene ATNEK4  function Encodes AtNek4, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes.  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product ATNEK4 (NIMA-RELATED KINASE 4); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note NIMA-RELATED KINASE 4 (ATNEK4); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATNEK2 (NIMA-RELATED KINASE 2); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT3G04810.2); Has 92489 Blast hits to 90775 proteins in 2928 species: Archae - 54; Bacteria - 8181; Metazoa - 40097; Fungi - 8438; Plants - 17716; Viruses - 479; Other Eukaryotes - 17524 (source: NCBI BLink).  protein_id AT3G63280.2p  transcript_id AT3G63280.2  protein_id AT3G63280.2p  transcript_id AT3G63280.2  
At3g63290	chr3:023381713	0.0	W/23381713-23381949,23382085-23383059	AT3G63290.1  CDS  gene_syn MAA21.8  go_component cellular_component|GO:0005575||ND  go_process pollen development|GO:0009555|19237690|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13400.1); Has 92 Blast hits to 92 proteins in 36 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 34; Plants - 34; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT3G63290.1p  transcript_id AT3G63290.1  protein_id AT3G63290.1p  transcript_id AT3G63290.1  
At3g63290	chr3:023382148	0.0	W/23382148-23383059	AT3G63290.2  CDS  gene_syn MAA21.8  go_component cellular_component|GO:0005575||ND  go_process pollen development|GO:0009555|19237690|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13400.1); Has 88 Blast hits to 88 proteins in 35 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 34; Plants - 30; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT3G63290.2p  transcript_id AT3G63290.2  protein_id AT3G63290.2p  transcript_id AT3G63290.2  
At3g63300	chr3:023385033	0.0	W/23385033-23385386,23385470-23385595,23386341-23386785,23386861-23387094,23387176-23387283,23387396-23387625	AT3G63300.1  CDS  gene_syn MAA21.9  go_process signal transduction|GO:0007165|15358268|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product phosphoinositide binding  note phosphoinositide binding; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin-like, plant (InterPro:IPR013666), Protein of unknown function DUF828, plant (InterPro:IPR008546); BEST Arabidopsis thaliana protein match is: phosphoinositide binding (TAIR:AT3G22810.1); Has 626 Blast hits to 240 proteins in 60 species: Archae - 0; Bacteria - 109; Metazoa - 129; Fungi - 39; Plants - 129; Viruses - 0; Other Eukaryotes - 220 (source: NCBI BLink).  protein_id AT3G63300.1p  transcript_id AT3G63300.1  protein_id AT3G63300.1p  transcript_id AT3G63300.1  
At3g63300	chr3:023385464	0.0	W/23385464-23385595,23386341-23386785,23386861-23387094,23387176-23387283,23387396-23387625	AT3G63300.2  CDS  gene_syn MAA21.9  go_process signal transduction|GO:0007165|15358268|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product phosphoinositide binding  note phosphoinositide binding; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin-like, plant (InterPro:IPR013666), Protein of unknown function DUF828, plant (InterPro:IPR008546); BEST Arabidopsis thaliana protein match is: phosphoinositide binding (TAIR:AT4G14740.2); Has 278 Blast hits to 148 proteins in 22 species: Archae - 0; Bacteria - 13; Metazoa - 2; Fungi - 2; Plants - 115; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).  protein_id AT3G63300.2p  transcript_id AT3G63300.2  protein_id AT3G63300.2p  transcript_id AT3G63300.2  
At3g63310	chr3:023388642	0.0	C/23388642-23388882,23388451-23388564,23388222-23388379,23387938-23388144	AT3G63310.1  CDS  gene_syn MAA21.11  go_function glutamate binding|GO:0016595||ISS  product glutamate binding  note glutamate binding; FUNCTIONS IN: glutamate binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0005 (InterPro:IPR006214); BEST Arabidopsis thaliana protein match is: glutamate binding (TAIR:AT1G03070.1); Has 3660 Blast hits to 3660 proteins in 893 species: Archae - 0; Bacteria - 1631; Metazoa - 704; Fungi - 90; Plants - 142; Viruses - 53; Other Eukaryotes - 1040 (source: NCBI BLink).  protein_id AT3G63310.1p  transcript_id AT3G63310.1  protein_id AT3G63310.1p  transcript_id AT3G63310.1  
At3g63320	chr3:023391383	0.0	C/23391383-23391556,23391092-23391297,23390919-23391012,23390697-23390838,23390331-23390592,23389838-23390231	AT3G63320.1  CDS  gene_syn MAA21.1  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C-related / PP2C-related  note protein phosphatase 2C-related / PP2C-related; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C-related / PP2C-related (TAIR:AT3G63340.1); Has 3345 Blast hits to 3344 proteins in 216 species: Archae - 0; Bacteria - 4; Metazoa - 1160; Fungi - 351; Plants - 1034; Viruses - 5; Other Eukaryotes - 791 (source: NCBI BLink).  protein_id AT3G63320.1p  transcript_id AT3G63320.1  protein_id AT3G63320.1p  transcript_id AT3G63320.1  
At3g63330	chr3:023394661	0.0	C/23394661-23394663,23393941-23394339,23393764-23393821,23393582-23393669,23393364-23393438,23393186-23393269,23392967-23393110,23392791-23392866,23392494-23392576,23392348-23392402,23392181-23392246	AT3G63330.1  CDS  gene_syn MAA21.2  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Protein phosphatase 2C (InterPro:IPR015655), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2); kinase/ protein kinase (TAIR:AT4G24740.2); Has 22020 Blast hits to 21995 proteins in 712 species: Archae - 3; Bacteria - 621; Metazoa - 10386; Fungi - 3115; Plants - 3050; Viruses - 8; Other Eukaryotes - 4837 (source: NCBI BLink).  protein_id AT3G63330.1p  transcript_id AT3G63330.1  protein_id AT3G63330.1p  transcript_id AT3G63330.1  
At3g63330	chr3:023394661	0.0	C/23394661-23394663,23393941-23394339,23393764-23393821,23393582-23393669,23393364-23393438,23393186-23393269,23392967-23393110,23392791-23392866,23392494-23392576,23392379-23392402,23392234-23392246	AT3G63330.2  CDS  gene_syn MAA21.2  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Protein phosphatase 2C (InterPro:IPR015655), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: SnRK1.3 (SNF1-RELATED PROTEIN KINASE 1.3); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G39440.1); Has 20578 Blast hits to 20558 proteins in 695 species: Archae - 3; Bacteria - 623; Metazoa - 9814; Fungi - 2842; Plants - 2827; Viruses - 8; Other Eukaryotes - 4461 (source: NCBI BLink).  protein_id AT3G63330.2p  transcript_id AT3G63330.2  protein_id AT3G63330.2p  transcript_id AT3G63330.2  
At3g63340	chr3:023397702	0.0	C/23397702-23397999,23397368-23397632,23397179-23397284,23396951-23397092,23396590-23396851,23396115-23396479,23395904-23395980,23395634-23395705	AT3G63340.1  CDS  gene_syn MAA21.3  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C-related / PP2C-related  note protein phosphatase 2C-related / PP2C-related; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C, N-terminal (InterPro:IPR014045), Protein phosphatase 2C (InterPro:IPR015655); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C-related / PP2C-related (TAIR:AT3G63320.1); Has 3271 Blast hits to 3269 proteins in 215 species: Archae - 0; Bacteria - 0; Metazoa - 1075; Fungi - 380; Plants - 1004; Viruses - 5; Other Eukaryotes - 807 (source: NCBI BLink).  protein_id AT3G63340.1p  transcript_id AT3G63340.1  protein_id AT3G63340.1p  transcript_id AT3G63340.1  
At3g63350	chr3:023399468	0.0	W/23399468-23399728,23400225-23400812	AT3G63350.1  CDS  gene_syn AT-HSFA7B, HEAT SHOCK TRANSCRIPTION FACTOR A7B, HSFA7B, MAA21.4  gene AT-HSFA7B  function member of Heat Stress Transcription Factor (Hsf) family  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to heat|GO:0009408|15247379|IEP  go_process response to high light intensity|GO:0009644|17059409|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AT-HSFA7B; DNA binding / transcription factor  note AT-HSFA7B; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to high light intensity, response to heat, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: pedicel, root, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: AT-HSFA7A; DNA binding / transcription factor (TAIR:AT3G51910.1); Has 1298 Blast hits to 1294 proteins in 156 species: Archae - 0; Bacteria - 6; Metazoa - 262; Fungi - 320; Plants - 456; Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink).  protein_id AT3G63350.1p  transcript_id AT3G63350.1  protein_id AT3G63350.1p  transcript_id AT3G63350.1  
At3g63360	chr3:023401534	0.0	C/23401534-23401591,23401257-23401456	AT3G63360.1  CDS  gene_syn MAA21.5  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||IEA  product defensin-related  note defensin-related; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Knottin (InterPro:IPR003614); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G63360.1p  transcript_id AT3G63360.1  protein_id AT3G63360.1p  transcript_id AT3G63360.1  
At3g63370	chr3:023402080	0.0	W/23402080-23402374,23402486-23404780,23405127-23405245,23405549-23405642,23405741-23405991	AT3G63370.1  CDS  gene_syn MAA21.7  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G57430.1); Has 16480 Blast hits to 4859 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 46; Plants - 16142; Viruses - 0; Other Eukaryotes - 250 (source: NCBI BLink).  protein_id AT3G63370.1p  transcript_id AT3G63370.1  protein_id AT3G63370.1p  transcript_id AT3G63370.1  
At3g63375	chr3:023406177	0.0	W/23406177-23406267	AT3G63375.1  miRNA  gene_syn MICRORNA 167B, MIR167B  gene MIR167B  function Encodes a microRNA that targets ARF family members ARF6 and ARF8. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGAAGCUGCCAGCAUGAUCUA  go_component cellular_component|GO:0005575||ND  go_process gene silencing by miRNA|GO:0035195|15200956|TAS  go_process cellular response to nitrogen levels|GO:0043562|18180456|IEP  go_function molecular_function|GO:0003674||ND  product MIR167B (MICRORNA 167B); miRNA  transcript_id AT3G63375.1  
At3g63380	chr3:023407112	0.0	C/23407112-23410213	AT3G63380.1  CDS  go_component membrane|GO:0016020||IEA  go_process ATP biosynthetic process|GO:0006754||IEA  go_process cation transport|GO:0006812||IEA  go_process calcium ion transport|GO:0006816||IEA  go_process metabolic process|GO:0008152||IEA  go_function calcium-transporting ATPase activity|GO:0005388|12805592|ISS  go_function calcium-transporting ATPase activity|GO:0005388||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  product calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA12)  note calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA12); FUNCTIONS IN: calmodulin binding, calcium-transporting ATPase activity; INVOLVED IN: calcium ion transport, cation transport, metabolic process, ATP biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, calcium-transporting, PMCA-type (InterPro:IPR006408), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13) (TAIR:AT3G22910.1); Has 25733 Blast hits to 19799 proteins in 1838 species: Archae - 551; Bacteria - 15642; Metazoa - 3431; Fungi - 1703; Plants - 1173; Viruses - 3; Other Eukaryotes - 3230 (source: NCBI BLink).  protein_id AT3G63380.1p  transcript_id AT3G63380.1  protein_id AT3G63380.1p  transcript_id AT3G63380.1  
At3g63390	chr3:023411416	0.0	C/23411416-23411943	AT3G63390.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 17 Blast hits to 17 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G63390.1p  transcript_id AT3G63390.1  protein_id AT3G63390.1p  transcript_id AT3G63390.1  
At3g63400	chr3:023412449	0.0	W/23412449-23412526,23412606-23412660,23412770-23412858,23412977-23413001,23413271-23413309,23413387-23413504,23413634-23413794,23413883-23414251,23415206-23415435	AT3G63400.2  CDS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  go_process RNA splicing|GO:0008380|16807317|NAS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein  note peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, RNA splicing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP2) / rotamase (TAIR:AT2G21130.1); Has 42028 Blast hits to 23865 proteins in 1751 species: Archae - 89; Bacteria - 8128; Metazoa - 16951; Fungi - 3093; Plants - 1888; Viruses - 236; Other Eukaryotes - 11643 (source: NCBI BLink).  protein_id AT3G63400.2p  transcript_id AT3G63400.2  protein_id AT3G63400.2p  transcript_id AT3G63400.2  
At3g63400	chr3:023412449	0.0	W/23412449-23412526,23412606-23412660,23412770-23412858,23412977-23413001,23413271-23413309,23413387-23413504,23413634-23413794,23413883-23414339,23414441-23414782,23414865-23414945,23415168-23415435	AT3G63400.1  CDS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  go_process RNA splicing|GO:0008380|16807317|NAS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein  note peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, RNA splicing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP2) / rotamase (TAIR:AT2G21130.1); Has 47527 Blast hits to 29594 proteins in 1838 species: Archae - 95; Bacteria - 7193; Metazoa - 22003; Fungi - 4320; Plants - 2499; Viruses - 348; Other Eukaryotes - 11069 (source: NCBI BLink).  protein_id AT3G63400.1p  transcript_id AT3G63400.1  protein_id AT3G63400.1p  transcript_id AT3G63400.1  
At3g63410	chr3:023416452	0.0	C/23416452-23417002,23416051-23416357,23415816-23415974	AT3G63410.1  CDS  gene_syn ALBINO OR PALE GREEN MUTANT 1, APG1, E37, IEP37, INNER ENVELOPE PROTEIN 37, VITAMIN E DEFECTIVE 3, VTE3  gene APG1  function Encodes a MPBQ/MSBQ methyltransferase located in the chloroplast inner envelope membrane. Mutant plants lack plastoquinone (PQ), suggesting that the APG1 protein is involved in the methylation step of PQ biosynthesis. The gene product is also involved in tocopherol (vitamin E) biosynthesis.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast|GO:0009507|12787252|IDA  go_component chloroplast inner membrane|GO:0009706|12787252|ISS  go_component chloroplast inner membrane|GO:0009706||ISS  go_process vitamin E biosynthetic process|GO:0010189|14508009|IMP  go_process plastoquinone biosynthetic process|GO:0010236|12787252|IMP  go_process plastoquinone biosynthetic process|GO:0010236|14508009|IMP  go_function methyltransferase activity|GO:0008168||ISS  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757|12787252|ISS  go_function 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity|GO:0051741|14508009|IDA  product APG1 (ALBINO OR PALE GREEN MUTANT 1); 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase/ S-adenosylmethionine-dependent methyltransferase/ methyltransferase  note ALBINO OR PALE GREEN MUTANT 1 (APG1); FUNCTIONS IN: methyltransferase activity, S-adenosylmethionine-dependent methyltransferase activity, 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity; INVOLVED IN: plastoquinone biosynthetic process, vitamin E biosynthetic process; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); Has 4835 Blast hits to 4834 proteins in 1084 species: Archae - 222; Bacteria - 3219; Metazoa - 97; Fungi - 95; Plants - 127; Viruses - 0; Other Eukaryotes - 1075 (source: NCBI BLink).  protein_id AT3G63410.1p  transcript_id AT3G63410.1  protein_id AT3G63410.1p  transcript_id AT3G63410.1  
At3g63420	chr3:023417383	0.0	W/23417383-23417496,23418008-23418060,23418201-23418245,23418321-23418405	AT3G63420.1  CDS  gene_syn AGG1, Arabidopsis Ggamma-subunit 1, HETEROTRIMERIC G PROTEIN GAMMA-SUBUNIT  gene AGG1  function heterotrimeric G protein gamma-subunit (AGG1) mRNA,  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process defense response to fungus, incompatible interaction|GO:0009817|18441222|IMP  go_process seed germination|GO:0009845|18441222|IMP  go_process acropetal auxin transport|GO:0010541|18441222|IMP  go_process lateral root development|GO:0048527|18441222|IMP  go_function GTP binding|GO:0005525|11121078|ISS  product AGG1 (Arabidopsis Ggamma-subunit 1); GTP binding  note Arabidopsis Ggamma-subunit 1 (AGG1); FUNCTIONS IN: GTP binding; INVOLVED IN: defense response to fungus, incompatible interaction, acropetal auxin transport, seed germination, lateral root development; LOCATED IN: plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: AGG2 (G-PROTEIN GAMMA SUBUNIT 2) (TAIR:AT3G22942.1); Has 33 Blast hits to 33 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G63420.1p  transcript_id AT3G63420.1  protein_id AT3G63420.1p  transcript_id AT3G63420.1  
At3g63420	chr3:023417383	0.0	W/23417383-23417496,23418008-23418060,23418201-23418245,23418321-23418405	AT3G63420.2  CDS  gene_syn AGG1, Arabidopsis Ggamma-subunit 1, HETEROTRIMERIC G PROTEIN GAMMA-SUBUNIT  gene AGG1  function heterotrimeric G protein gamma-subunit (AGG1) mRNA,  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process defense response to fungus, incompatible interaction|GO:0009817|18441222|IMP  go_process seed germination|GO:0009845|18441222|IMP  go_process acropetal auxin transport|GO:0010541|18441222|IMP  go_process lateral root development|GO:0048527|18441222|IMP  go_function GTP binding|GO:0005525|11121078|ISS  product AGG1 (Arabidopsis Ggamma-subunit 1); GTP binding  note Arabidopsis Ggamma-subunit 1 (AGG1); FUNCTIONS IN: GTP binding; INVOLVED IN: defense response to fungus, incompatible interaction, acropetal auxin transport, seed germination, lateral root development; LOCATED IN: plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: AGG2 (G-PROTEIN GAMMA SUBUNIT 2) (TAIR:AT3G22942.1); Has 33 Blast hits to 33 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT3G63420.2p  transcript_id AT3G63420.2  protein_id AT3G63420.2p  transcript_id AT3G63420.2  
At3g63430	chr3:023420414	0.0	W/23420414-23420527,23420623-23421402,23421473-23422201	AT3G63430.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G18620.2); Has 90 Blast hits to 78 proteins in 18 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 3; Plants - 72; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT3G63430.1p  transcript_id AT3G63430.1  protein_id AT3G63430.1p  transcript_id AT3G63430.1  
At3g63445	chr3:023422653	0.0	C/23422653-23426338	AT3G63445.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT3G63440  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G63445.2  
At3g63445	chr3:023422731	0.0	C/23422731-23426228	AT3G63445.3  ncRNA  function Potential natural antisense gene, locus overlaps with AT3G63440  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G63445.3  
At3g63445	chr3:023422778	0.0	C/23422778-23426362	AT3G63445.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT3G63440  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G63445.1  
At3g63440	chr3:023424291	0.0	W/23424291-23424915,23425043-23425170,23425243-23425506,23425599-23425861,23425944-23426265	AT3G63440.1  CDS  gene_syn ATCKX6, ATCKX7, CKX6, CYTOKININ OXIDASE 6, CYTOKININ OXIDASE/DEHYDROGENASE 6  gene CKX6  function This gene used to be called AtCKX7. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.  go_process cytokinin catabolic process|GO:0009823||ISS  go_process stomatal complex morphogenesis|GO:0010103|14555694|TAS  go_function cytokinin dehydrogenase activity|GO:0019139|14555694|TAS  go_function cytokinin dehydrogenase activity|GO:0019139||ISS  product CKX6 (CYTOKININ OXIDASE/DEHYDROGENASE 6); cytokinin dehydrogenase  note CYTOKININ OXIDASE/DEHYDROGENASE 6 (CKX6); FUNCTIONS IN: cytokinin dehydrogenase activity; INVOLVED IN: stomatal complex morphogenesis, cytokinin catabolic process; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cytokinin dehydrogenase 1, FAD and cytokinin binding (InterPro:IPR015345), FAD-binding, type 2 (InterPro:IPR016166), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: CKX1 (CYTOKININ OXIDASE/DEHYDROGENASE 1); cytokinin dehydrogenase (TAIR:AT2G41510.1); Has 3783 Blast hits to 3780 proteins in 763 species: Archae - 72; Bacteria - 2139; Metazoa - 120; Fungi - 680; Plants - 284; Viruses - 0; Other Eukaryotes - 488 (source: NCBI BLink).  protein_id AT3G63440.1p  transcript_id AT3G63440.1  protein_id AT3G63440.1p  transcript_id AT3G63440.1  
At3g63450	chr3:023428497	0.0	C/23428497-23428864,23428250-23428411,23427999-23428178,23427881-23427918,23427656-23427814,23427518-23427581,23427191-23427434	AT3G63450.1  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA binding / nucleic acid binding / nucleotide binding  note RNA binding / nucleic acid binding / nucleotide binding; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G51950.2); Has 190 Blast hits to 125 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 37; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G63450.1p  transcript_id AT3G63450.1  protein_id AT3G63450.1p  transcript_id AT3G63450.1  
At3g63450	chr3:023428497	0.0	C/23428497-23428864,23428250-23428411,23427999-23428178,23427881-23427918,23427656-23427814,23427518-23427581,23427191-23427434	AT3G63450.2  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA binding / nucleic acid binding / nucleotide binding  note RNA binding / nucleic acid binding / nucleotide binding; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G51950.2); Has 190 Blast hits to 125 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 37; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT3G63450.2p  transcript_id AT3G63450.2  protein_id AT3G63450.2p  transcript_id AT3G63450.2  
At3g63460	chr3:023436925	0.0	C/23436925-23437241,23436721-23436775,23436504-23436626,23436296-23436392,23436144-23436180,23435951-23436056,23435817-23435874,23435505-23435602,23435289-23435408,23434944-23434986,23434704-23434825,23434493-23434620,23433835-23434396,23433639-23433731,23433165-23433350,23432870-23433083,23432734-23432792,23432485-23432640,23431876-23432007,23431518-23431794,23431192-23431430,23431009-23431101	AT3G63460.1  CDS  go_component membrane|GO:0016020|17432890|IDA  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function molecular_function|GO:0003674||ND  product WD-40 repeat family protein  note WD-40 repeat family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT1G18830.1); Has 29990 Blast hits to 20402 proteins in 935 species: Archae - 42; Bacteria - 3651; Metazoa - 11973; Fungi - 5426; Plants - 3318; Viruses - 524; Other Eukaryotes - 5056 (source: NCBI BLink).  protein_id AT3G63460.1p  transcript_id AT3G63460.1  protein_id AT3G63460.1p  transcript_id AT3G63460.1  
At3g63460	chr3:023436925	0.0	C/23436925-23437241,23436721-23436775,23436504-23436626,23436296-23436392,23436144-23436180,23435951-23436056,23435817-23435874,23435505-23435602,23435289-23435408,23434950-23434986,23434704-23434825,23434493-23434620,23433835-23434396,23433639-23433731,23433165-23433350,23432870-23433083,23432734-23432792,23432485-23432640,23431876-23432007,23431518-23431794,23431192-23431430,23431009-23431101	AT3G63460.2  CDS  go_component membrane|GO:0016020|17432890|IDA  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function molecular_function|GO:0003674||ND  product WD-40 repeat family protein  note WD-40 repeat family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT1G18830.1); Has 30015 Blast hits to 20409 proteins in 936 species: Archae - 42; Bacteria - 3653; Metazoa - 11967; Fungi - 5444; Plants - 3330; Viruses - 524; Other Eukaryotes - 5055 (source: NCBI BLink).  protein_id AT3G63460.2p  transcript_id AT3G63460.2  protein_id AT3G63460.2p  transcript_id AT3G63460.2  
At3g63470	chr3:023438561	0.0	W/23438561-23438957,23439653-23439760,23439859-23440862	AT3G63470.1  CDS  gene_syn scpl40, serine carboxypeptidase-like 40  gene scpl40  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl40 (serine carboxypeptidase-like 40); serine-type carboxypeptidase  note serine carboxypeptidase-like 40 (scpl40); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl39 (serine carboxypeptidase-like 39); serine-type carboxypeptidase (TAIR:AT3G52020.1); Has 2449 Blast hits to 2397 proteins in 266 species: Archae - 0; Bacteria - 103; Metazoa - 570; Fungi - 571; Plants - 897; Viruses - 0; Other Eukaryotes - 308 (source: NCBI BLink).  protein_id AT3G63470.1p  transcript_id AT3G63470.1  protein_id AT3G63470.1p  transcript_id AT3G63470.1  
At3g63480	chr3:023443693	0.0	C/23443693-23443809,23443501-23443603,23443298-23443341,23443162-23443191,23442952-23443074,23442844-23442869,23442678-23442771,23442560-23442601,23442443-23442476,23442214-23442289,23441915-23442134,23441742-23441833,23441536-23441647,23441263-23441442,23441065-23441181	AT3G63480.1  CDS  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product kinesin heavy chain, putative  note kinesin heavy chain, putative; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: PAKRP1 (PHRAGMOPLAST-ASSOCIATED KINESIN-RELATED PROTEIN 1); microtubule motor/ plus-end-directed microtubule motor (TAIR:AT4G14150.1); Has 7627 Blast hits to 7290 proteins in 235 species: Archae - 0; Bacteria - 0; Metazoa - 3886; Fungi - 888; Plants - 878; Viruses - 0; Other Eukaryotes - 1975 (source: NCBI BLink).  protein_id AT3G63480.1p  transcript_id AT3G63480.1  protein_id AT3G63480.1p  transcript_id AT3G63480.1  
At3g63480	chr3:023443693	0.0	C/23443693-23443809,23443501-23443603,23443298-23443341,23443162-23443191,23442952-23443074,23442844-23442869,23442690-23442771,23442560-23442601,23442443-23442476,23442214-23442289,23441915-23442134,23441742-23441833,23441536-23441647,23441263-23441442,23441065-23441181	AT3G63480.2  CDS  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product kinesin heavy chain, putative  note kinesin heavy chain, putative; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: PAKRP1 (PHRAGMOPLAST-ASSOCIATED KINESIN-RELATED PROTEIN 1); microtubule motor/ plus-end-directed microtubule motor (TAIR:AT4G14150.1); Has 7659 Blast hits to 7324 proteins in 235 species: Archae - 0; Bacteria - 0; Metazoa - 3909; Fungi - 894; Plants - 877; Viruses - 0; Other Eukaryotes - 1979 (source: NCBI BLink).  protein_id AT3G63480.2p  transcript_id AT3G63480.2  protein_id AT3G63480.2p  transcript_id AT3G63480.2  
At3g63490	chr3:023444269	0.0	W/23444269-23444598,23444673-23444852,23444945-23444999,23445261-23445388,23445516-23445599,23445669-23445794,23445883-23446020	AT3G63490.1  CDS  go_component nucleus|GO:0005634|14617066|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process RNA processing|GO:0006396||IEA  go_process translation|GO:0006412||IEA  go_function RNA binding|GO:0003723||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L1 family protein  note ribosomal protein L1 family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, bacterial-type (InterPro:IPR005878), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro:IPR016094); BEST Arabidopsis thaliana protein match is: ribosomal protein L1 family protein (TAIR:AT2G42710.1); Has 6420 Blast hits to 6414 proteins in 1604 species: Archae - 183; Bacteria - 2916; Metazoa - 108; Fungi - 179; Plants - 61; Viruses - 0; Other Eukaryotes - 2973 (source: NCBI BLink).  protein_id AT3G63490.1p  transcript_id AT3G63490.1  protein_id AT3G63490.1p  transcript_id AT3G63490.1  
At3g63490	chr3:023444269	0.0	W/23444269-23444598,23444673-23444852,23444945-23444999,23445261-23445388,23445516-23445599,23445679-23445777	AT3G63490.2  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process RNA processing|GO:0006396||IEA  go_process translation|GO:0006412||IEA  go_function RNA binding|GO:0003723||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L1 family protein  note ribosomal protein L1 family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: chloroplast thylakoid membrane, ribosome, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, 3-layer alpha/beta-sandwich (InterPro:IPR016095), Ribosomal protein L1, bacterial-type (InterPro:IPR005878); BEST Arabidopsis thaliana protein match is: ribosomal protein L1 family protein (TAIR:AT2G42710.1); Has 5929 Blast hits to 5929 proteins in 1547 species: Archae - 176; Bacteria - 2894; Metazoa - 34; Fungi - 114; Plants - 47; Viruses - 0; Other Eukaryotes - 2664 (source: NCBI BLink).  protein_id AT3G63490.2p  transcript_id AT3G63490.2  protein_id AT3G63490.2p  transcript_id AT3G63490.2  
At3g63500	chr3:023447069	0.0	C/23447069-23449166,23446331-23446896	AT3G63500.1  CDS  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14740.1); Has 650 Blast hits to 548 proteins in 123 species: Archae - 6; Bacteria - 36; Metazoa - 193; Fungi - 72; Plants - 129; Viruses - 0; Other Eukaryotes - 214 (source: NCBI BLink).  protein_id AT3G63500.1p  transcript_id AT3G63500.1  protein_id AT3G63500.1p  transcript_id AT3G63500.1  
At3g63500	chr3:023447069	0.0	C/23447069-23449991,23446331-23446896	AT3G63500.2  CDS  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14740.1); Has 2817 Blast hits to 2297 proteins in 310 species: Archae - 8; Bacteria - 278; Metazoa - 1232; Fungi - 288; Plants - 201; Viruses - 10; Other Eukaryotes - 800 (source: NCBI BLink).  protein_id AT3G63500.2p  transcript_id AT3G63500.2  protein_id AT3G63500.2p  transcript_id AT3G63500.2  
At3g63510	chr3:023450542	0.0	W/23450542-23450705,23450779-23450905,23450988-23451115,23451192-23451261,23451334-23451436,23451521-23451638,23451730-23451811,23451891-23451952,23452028-23452100,23452186-23452269,23452361-23452441,23452515-23452682	AT3G63510.1  CDS  go_process tRNA processing|GO:0008033||IEA  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function tRNA dihydrouridine synthase activity|GO:0017150||IEA  go_function FAD binding|GO:0050660||IEA  go_process regulation of nitrogen utilization|GO:0006808||ISS  product FAD binding / catalytic/ tRNA dihydrouridine synthase  note FAD binding / catalytic/ tRNA dihydrouridine synthase; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity; INVOLVED IN: regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269); BEST Arabidopsis thaliana protein match is: nitrogen regulation family protein (TAIR:AT5G47970.2); Has 7869 Blast hits to 7865 proteins in 1391 species: Archae - 41; Bacteria - 4285; Metazoa - 242; Fungi - 149; Plants - 87; Viruses - 0; Other Eukaryotes - 3065 (source: NCBI BLink).  protein_id AT3G63510.1p  transcript_id AT3G63510.1  protein_id AT3G63510.1p  transcript_id AT3G63510.1  
At3g63510	chr3:023450615	0.0	W/23450615-23450705,23450805-23450905,23450988-23451115,23451192-23451261,23451334-23451436,23451521-23451638,23451730-23451811,23451891-23451952,23452028-23452100,23452186-23452269,23452361-23452441,23452515-23452682	AT3G63510.2  CDS  go_process tRNA processing|GO:0008033||IEA  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function tRNA dihydrouridine synthase activity|GO:0017150||IEA  go_function FAD binding|GO:0050660||IEA  go_process regulation of nitrogen utilization|GO:0006808||ISS  product FAD binding / catalytic/ tRNA dihydrouridine synthase  note FAD binding / catalytic/ tRNA dihydrouridine synthase; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity; INVOLVED IN: regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269); BEST Arabidopsis thaliana protein match is: nitrogen regulation family protein (TAIR:AT5G47970.2); Has 7707 Blast hits to 7703 proteins in 1379 species: Archae - 41; Bacteria - 4275; Metazoa - 202; Fungi - 113; Plants - 80; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).  protein_id AT3G63510.2p  transcript_id AT3G63510.2  protein_id AT3G63510.2p  transcript_id AT3G63510.2  
At3g63520	chr3:023452940	0.0	W/23452940-23453155,23453237-23453307,23453406-23453420,23453537-23453648,23453737-23453836,23453922-23453984,23454209-23454319,23454398-23454582,23454707-23454845,23454943-23455060,23455136-23455237,23455341-23455583,23455677-23455788,23455867-23455896	AT3G63520.1  CDS  gene_syn ATCCD1, ATNCED1, CAROTENOID CLEAVAGE DIOXYGENASE 1, CCD1, NCED1  gene CCD1  function Encodes a protein with 9-<i>cis</i>-epoxycarotenoid dioxygenase activity. The enzyme was shown to act on a variety of carotenoid including & 946;-carotene, lutein, zeaxanthin, and all-<i>trans</i>-violaxanthin. When those compounds are used as substrates, the major reaction product detected is a C14 dialdehyde: 4,9-dimethyldodeca-2,4,6,8,10-pentaene-1,12-dial. The enzyme did not cleave as efficiently carotenoids containing 9-<i>cis</i>-double or allenic bonds.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component cytoplasm|GO:0005737|16507088|IDA  go_process response to water deprivation|GO:0009414||IEP  go_process carotenoid catabolic process|GO:0016118|11316814|IDA  go_process carotene catabolic process|GO:0016121|16507088|IMP  go_process xanthophyll catabolic process|GO:0016124|16507088|IMP  go_function 9-cis-epoxycarotenoid dioxygenase activity|GO:0045549|11316814|IDA  product CCD1 (CAROTENOID CLEAVAGE DIOXYGENASE 1); 9-cis-epoxycarotenoid dioxygenase  note CAROTENOID CLEAVAGE DIOXYGENASE 1 (CCD1); FUNCTIONS IN: 9-cis-epoxycarotenoid dioxygenase activity; INVOLVED IN: response to water deprivation, xanthophyll catabolic process, carotene catabolic process, carotenoid catabolic process; LOCATED IN: plasma membrane, vacuole, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4) (TAIR:AT4G19170.1); Has 2162 Blast hits to 2147 proteins in 362 species: Archae - 10; Bacteria - 526; Metazoa - 271; Fungi - 117; Plants - 542; Viruses - 0; Other Eukaryotes - 696 (source: NCBI BLink).  protein_id AT3G63520.1p  transcript_id AT3G63520.1  protein_id AT3G63520.1p  transcript_id AT3G63520.1  
At3g63530	chr3:023457641	0.0	C/23457641-23457787,23457269-23457500,23457164-23457198,23456970-23457014,23456720-23456847,23456536-23456644,23456407-23456457	AT3G63530.1  CDS  gene_syn BB, BB2, BIG BROTHER  gene BB  function Encodes a novel E3 ubiquitin ligase that acts as a central negative regulator of Arabidopsis floral organ size. Organ size is limited by restricting the period of proliferative growth, rather than the rate of growth and appears to act in a novel pathway, independent of ANT and JAG. Both mRNA and protein are expressed in all actively growing regions of the plant and the vasculature and the protein is rapidly turned over by proteasome-mediated degradation.  go_component cellular_component|GO:0005575||ND  go_process protein ubiquitination|GO:0016567|16461280|IDA  go_process negative regulation of organ growth|GO:0046621|16461280|IMP  go_process floral organ development|GO:0048437|16461280|IMP  go_process protein autoubiquitination|GO:0051865|16461280|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16461280|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product BB (BIG BROTHER); protein binding / ubiquitin-protein ligase/ zinc ion binding  note BIG BROTHER (BB); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: protein autoubiquitination, floral organ development, negative regulation of organ growth, protein ubiquitination; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G19910.1); Has 5477 Blast hits to 5467 proteins in 195 species: Archae - 0; Bacteria - 0; Metazoa - 2022; Fungi - 289; Plants - 2307; Viruses - 8; Other Eukaryotes - 851 (source: NCBI BLink).  protein_id AT3G63530.1p  transcript_id AT3G63530.1  protein_id AT3G63530.1p  transcript_id AT3G63530.1  
At3g63530	chr3:023457641	0.0	C/23457641-23457787,23457269-23457500,23457164-23457198,23456970-23457014,23456720-23456847,23456536-23456644,23456407-23456457	AT3G63530.2  CDS  gene_syn BB, BB2, BIG BROTHER  gene BB  function Encodes a novel E3 ubiquitin ligase that acts as a central negative regulator of Arabidopsis floral organ size. Organ size is limited by restricting the period of proliferative growth, rather than the rate of growth and appears to act in a novel pathway, independent of ANT and JAG. Both mRNA and protein are expressed in all actively growing regions of the plant and the vasculature and the protein is rapidly turned over by proteasome-mediated degradation.  go_component cellular_component|GO:0005575||ND  go_process protein ubiquitination|GO:0016567|16461280|IDA  go_process negative regulation of organ growth|GO:0046621|16461280|IMP  go_process floral organ development|GO:0048437|16461280|IMP  go_process protein autoubiquitination|GO:0051865|16461280|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16461280|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product BB (BIG BROTHER); protein binding / ubiquitin-protein ligase/ zinc ion binding  note BIG BROTHER (BB); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: protein autoubiquitination, floral organ development, negative regulation of organ growth, protein ubiquitination; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G19910.1); Has 5477 Blast hits to 5467 proteins in 195 species: Archae - 0; Bacteria - 0; Metazoa - 2022; Fungi - 289; Plants - 2307; Viruses - 8; Other Eukaryotes - 851 (source: NCBI BLink).  protein_id AT3G63530.2p  transcript_id AT3G63530.2  protein_id AT3G63530.2p  transcript_id AT3G63530.2  
At3g63540	chr3:023459182	0.0	C/23459182-23459800	AT3G63540.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT3G63540.1  >Feature ref|NC_003075|  
At4g00005	chr4:000001180	0.0	C/1180-1536	AT4G00005.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: PRA1.B5 (PRENYLATED RAB ACCEPTOR 1.B5) (TAIR:AT5G01640.1).  protein_id AT4G00005.1p  transcript_id AT4G00005.1  protein_id AT4G00005.1p  transcript_id AT4G00005.1  
At4g00020	chr4:000010211	0.0	C/10211-10364,9982-10125,9686-9847,8463-9437,8244-8368,8001-8155,7712-7834,7453-7638,7294-7375,7144-7194,6975-7056,6760-6871,6605-6676,5657-5855,5406-5588,4977-5119,4839-4901,4545-4749,4265-4438,4107-4172	AT4G00020.1  CDS  gene_syn BRCA2(IV), BRCA2A, BREAST CANCER 2 LIKE 2A, EDA20, EMBRYO SAC DEVELOPMENT ARREST 20, F6N15.14, F6N15_14, MATERNAL EFFECT EMBRYO ARREST 43, MEE43  gene BRCA2(IV)  function Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.  go_component nucleus|GO:0005634||IEA  go_function single-stranded DNA binding|GO:0003697||IEA  go_function protein binding|GO:0005515||IEA  go_process meiosis|GO:0007126|15014444|IMP  go_process embryo sac development|GO:0009553|15634699|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process embryo sac morphogenesis|GO:0048314|15634699|IMP  product protein binding / single-stranded DNA binding  note BREAST CANCER 2 LIKE 2A (BRCA2(IV)); FUNCTIONS IN: protein binding, single-stranded DNA binding; INVOLVED IN: embryonic development ending in seed dormancy, meiosis, embryo sac morphogenesis, embryo sac development; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), BRCA2, helical (InterPro:IPR015252), BRCA2 repeat subgroup (InterPro:IPR018231), DNA recombination repair protein, BRCA2 (InterPro:IPR011370), BRCA2 repeat (InterPro:IPR002093), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525); BEST Arabidopsis thaliana protein match is: BRCA2B (BRCA2-LIKE B); protein binding / single-stranded DNA binding (TAIR:AT5G01630.1); Has 241 Blast hits to 156 proteins in 66 species: Archae - 0; Bacteria - 6; Metazoa - 119; Fungi - 17; Plants - 30; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT4G00020.1p  transcript_id AT4G00020.1  protein_id AT4G00020.1p  transcript_id AT4G00020.1  
At4g00020	chr4:000010211	0.0	C/10211-10364,9982-10125,9686-9847,8463-9437,8244-8368,8029-8155,7914-7947,7712-7813,7453-7638,7294-7375,7144-7194,6975-7056,6760-6871,6605-6676,5657-5855,5406-5588,4977-5119,4839-4901,4545-4749,4227-4438,4127-4149,2895-3022	AT4G00020.2  CDS  gene_syn BRCA2(IV), BRCA2A, BREAST CANCER 2 LIKE 2A, EDA20, EMBRYO SAC DEVELOPMENT ARREST 20, F6N15.14, F6N15_14, MATERNAL EFFECT EMBRYO ARREST 43, MEE43  gene BRCA2(IV)  function Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.  go_component nucleus|GO:0005634||IEA  go_function single-stranded DNA binding|GO:0003697||IEA  go_function protein binding|GO:0005515||IEA  go_process meiosis|GO:0007126|15014444|IMP  go_process embryo sac development|GO:0009553|15634699|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process embryo sac morphogenesis|GO:0048314|15634699|IMP  product protein binding / single-stranded DNA binding  note BREAST CANCER 2 LIKE 2A (BRCA2(IV)); FUNCTIONS IN: protein binding, single-stranded DNA binding; INVOLVED IN: embryonic development ending in seed dormancy, meiosis, embryo sac morphogenesis, embryo sac development; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: BRCA2, helical (InterPro:IPR015252), BRCA2 repeat subgroup (InterPro:IPR018231), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525); BEST Arabidopsis thaliana protein match is: BRCA2B (BRCA2-LIKE B); protein binding / single-stranded DNA binding (TAIR:AT5G01630.1).  protein_id AT4G00020.2p  transcript_id AT4G00020.2  protein_id AT4G00020.2p  transcript_id AT4G00020.2  
At4g00026	chr4:000013172	0.0	C/13172-13285,12924-12959,12791-12809,12573-12706,12262-12440,12131-12179,11897-12016,11634-11792	AT4G00026.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mitochondrial import inner membrane translocase, subunit Tim21 (InterPro:IPR013261); Has 168 Blast hits to 168 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 92; Fungi - 52; Plants - 20; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G00026.1p  transcript_id AT4G00026.1  protein_id AT4G00026.1p  transcript_id AT4G00026.1  
At4g00030	chr4:000013565	0.0	W/13565-14028,14114-14179,14258-14366	AT4G00030.1  CDS  gene_syn F6N15.13, F6N15_13  go_function structural molecule activity|GO:0005198||IEA  go_process biological_process|GO:0008150||ND  go_function structural molecule activity|GO:0005198||ISS  product plastid-lipid associated protein PAP / fibrillin family protein  note plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: PAP fibrillin (InterPro:IPR006843); Has 126 Blast hits to 126 proteins in 26 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 0; Plants - 112; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G00030.1p  transcript_id AT4G00030.1  protein_id AT4G00030.1p  transcript_id AT4G00030.1  
At4g00040	chr4:000014653	0.0	W/14653-14833,14921-15897	AT4G00040.1  CDS  gene_syn F6N15.12, F6N15_12  go_process metabolic process|GO:0008152||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function catalytic activity|GO:0003824||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_process phenylpropanoid biosynthetic process|GO:0009699||ISS  product chalcone and stilbene synthase family protein  note chalcone and stilbene synthase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: phenylpropanoid biosynthetic process, biosynthetic process, metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone/stilbene synthase, N-terminal (InterPro:IPR001099), Thiolase-like (InterPro:IPR016039), Polyketide synthase, type III (InterPro:IPR011141), Thiolase-like, subgroup (InterPro:IPR016038), Chalcone and stilbene synthases, C-terminal (InterPro:IPR012328); BEST Arabidopsis thaliana protein match is: chalcone and stilbene synthase family protein (TAIR:AT1G02050.1); Has 4158 Blast hits to 4154 proteins in 955 species: Archae - 0; Bacteria - 1171; Metazoa - 0; Fungi - 48; Plants - 2750; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).  protein_id AT4G00040.1p  transcript_id AT4G00040.1  protein_id AT4G00040.1p  transcript_id AT4G00040.1  
At4g00050	chr4:000017863	0.0	W/17863-17954,18030-18513,18600-18692,18805-18870,19296-19673,19762-19848	AT4G00050.1  CDS  gene_syn F6N15.11, F6N15_11, UNE10, unfertilized embryo sac 10  gene UNE10  go_component nucleus|GO:0005634||IEA  go_process double fertilization forming a zygote and endosperm|GO:0009567|15634699|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product UNE10 (unfertilized embryo sac 10); DNA binding / transcription factor  note unfertilized embryo sac 10 (UNE10); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: double fertilization forming a zygote and endosperm, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: PIF7 (PHYTOCHROME-INTERACTING FACTOR7); DNA binding / double-stranded DNA binding / transcription factor (TAIR:AT5G61270.1); Has 2238 Blast hits to 2238 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 330; Fungi - 36; Plants - 1869; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G00050.1p  transcript_id AT4G00050.1  protein_id AT4G00050.1p  transcript_id AT4G00050.1  
At4g00058	chr4:000021437	0.0	W/21437-22297,22687-23199,23274-23384,23458-23592,23738-23794	AT4G00058.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT4G00058.1p  transcript_id AT4G00058.1  protein_id AT4G00058.1p  transcript_id AT4G00058.1  
At4g00060	chr4:000023899	0.0	W/23899-25218,25294-25410,25559-25741,25818-25880,26339-26410,26501-26752,26884-27003,27219-27278,27383-27423,27522-27599,27688-27772,27868-27996	AT4G00060.1  CDS  gene_syn F6N15.10, F6N15_10, MEE44, maternal effect embryo arrest 44  gene MEE44  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function nucleotidyltransferase activity|GO:0016779||ISS  product MEE44 (maternal effect embryo arrest 44); nucleotidyltransferase  note maternal effect embryo arrest 44 (MEE44); FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: embryonic development ending in seed dormancy; CONTAINS InterPro DOMAIN/s: Nucleotidyltransferase (InterPro:IPR002934), PAP/25A-associated (InterPro:IPR002058); BEST Arabidopsis thaliana protein match is: nucleotidyltransferase family protein (TAIR:AT5G53770.1); Has 551 Blast hits to 516 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 217; Fungi - 139; Plants - 50; Viruses - 2; Other Eukaryotes - 143 (source: NCBI BLink).  protein_id AT4G00060.1p  transcript_id AT4G00060.1  protein_id AT4G00060.1p  transcript_id AT4G00060.1  
At4g00070	chr4:000031270	0.0	C/31270-31426,30900-30985,30072-30137,29849-29983,29672-29767	AT4G00070.1  CDS  gene_syn F6N15.15, F6N15_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger protein-related (TAIR:AT1G36950.1); Has 412 Blast hits to 412 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 32; Fungi - 25; Plants - 277; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT4G00070.1p  transcript_id AT4G00070.1  protein_id AT4G00070.1p  transcript_id AT4G00070.1  
At4g00080	chr4:000032946	0.0	W/32946-33575	AT4G00080.1  CDS  gene_syn F6N15.9, F6N15_9, UNE11, unfertilized embryo sac 11  gene UNE11  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process double fertilization forming a zygote and endosperm|GO:0009567|15634699|IMP  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product UNE11 (unfertilized embryo sac 11); enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor  note unfertilized embryo sac 11 (UNE11); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: double fertilization forming a zygote and endosperm; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT1G62770.1); Has 302 Blast hits to 300 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 302; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G00080.1p  transcript_id AT4G00080.1  protein_id AT4G00080.1p  transcript_id AT4G00080.1  
At4g00085	chr4:000033800	0.0	W/33800-33872	AT4G00085.1  tRNA  gene_syn 67033.TRNA-LYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Lys (anticodon: CTT)  transcript_id AT4G00085.1  
At4g00090	chr4:000034234	0.0	W/34234-34437,34545-34650,34748-34808,34922-35202,35411-35550,35627-35701,35811-35901,36070-36273,36387-36431,36509-36594	AT4G00090.1  CDS  gene_syn F6N15.8, F6N15_8  go_component endomembrane system|GO:0012505||IEA  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: nucleotide binding (TAIR:AT4G32990.1); Has 14797 Blast hits to 8355 proteins in 382 species: Archae - 36; Bacteria - 3895; Metazoa - 5230; Fungi - 2687; Plants - 864; Viruses - 0; Other Eukaryotes - 2085 (source: NCBI BLink).  protein_id AT4G00090.1p  transcript_id AT4G00090.1  protein_id AT4G00090.1p  transcript_id AT4G00090.1  
At4g00100	chr4:000037172	0.0	W/37172-37194,37274-37346,37429-37567,37651-37837,38090-38123	AT4G00100.1  CDS  gene_syn ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A, ATRPS13A, F6N15.7, F6N15_7, PFL2, POINTED FIRST LEAF 2, RIBOSOMAL PROTEIN S13, RPS13  gene ATRPS13A  function Encodes a cytoplasmic ribosomal protein S13 homologue involved in early leaf development  go_component nucleolus|GO:0005730|15496452|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|10849343|NAS  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process cytokinesis by cell plate formation|GO:0000911|10849343|IMP  go_process translation|GO:0006412|10849343|TAS  go_process translation|GO:0006412|11598216|ISS  go_process leaf morphogenesis|GO:0009965|10849343|IMP  go_process trichome morphogenesis|GO:0010090|10849343|IMP  go_function structural constituent of ribosome|GO:0003735|10849343|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A); structural constituent of ribosome  note ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A (ATRPS13A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, trichome morphogenesis, cytokinesis by cell plate formation, leaf morphogenesis; LOCATED IN: cytosolic small ribosomal subunit, nucleolus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13/S15, N-terminal (InterPro:IPR012606), Ribosomal protein S15 (InterPro:IPR000589), S15/NS1, RNA-binding (InterPro:IPR009068); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S13 (RPS13A) (TAIR:AT3G60770.1); Has 787 Blast hits to 787 proteins in 301 species: Archae - 177; Bacteria - 0; Metazoa - 232; Fungi - 99; Plants - 90; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).  protein_id AT4G00100.1p  transcript_id AT4G00100.1  protein_id AT4G00100.1p  transcript_id AT4G00100.1  
At4g00110	chr4:000038702	0.0	C/38702-39994	AT4G00110.1  CDS  gene_syn F6N15.16, F6N15_16, GAE3, UDP-D-GLUCURONATE 4-EPIMERASE 3  gene GAE3  function Encodes a putative membrane-anchored UDP-D-glucuronate 4-epimerase.  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_component membrane|GO:0016020|15247385|TAS  go_process nucleotide-sugar metabolic process|GO:0009225||ISS  go_function catalytic activity|GO:0003824||ISS  go_function UDP-glucuronate 4-epimerase activity|GO:0050378|15247385|ISS  product GAE3 (UDP-D-GLUCURONATE 4-EPIMERASE 3); UDP-glucuronate 4-epimerase/ catalytic  note UDP-D-GLUCURONATE 4-EPIMERASE 3 (GAE3); FUNCTIONS IN: UDP-glucuronate 4-epimerase activity, catalytic activity; INVOLVED IN: cellular metabolic process, carbohydrate metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: GAE2 (UDP-D-GLUCURONATE 4-EPIMERASE 2); UDP-glucuronate 4-epimerase/ catalytic (TAIR:AT1G02000.1); Has 31002 Blast hits to 30998 proteins in 1702 species: Archae - 470; Bacteria - 14798; Metazoa - 679; Fungi - 299; Plants - 688; Viruses - 31; Other Eukaryotes - 14037 (source: NCBI BLink).  protein_id AT4G00110.1p  transcript_id AT4G00110.1  protein_id AT4G00110.1p  transcript_id AT4G00110.1  
At4g00114	chr4:000040862	0.0	C/40862-41383	AT4G00114.1  pseudogenic_transcript  pseudo  function pseudogene of transketolase  
At4g00120	chr4:000042601	0.0	C/42601-43197	AT4G00120.1  CDS  gene_syn EDA33, EMBRYO SAC DEVELOPMENT ARREST 33, F6N15.18, F6N15_18, GT140, IND, IND1, INDEHISCENT  gene IND  go_component nucleus|GO:0005634||IEA  go_process polar nucleus fusion|GO:0010197|15634699|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product IND (INDEHISCENT); DNA binding / transcription factor  note INDEHISCENT (IND); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: polar nucleus fusion, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: HEC3 (HECATE 3); DNA binding / transcription factor (TAIR:AT5G09750.1); Has 1277 Blast hits to 1277 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1277; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G00120.1p  transcript_id AT4G00120.1  protein_id AT4G00120.1p  transcript_id AT4G00120.1  
At4g00124	chr4:000045275	0.0	C/45275-45370	AT4G00124.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G00124.1p  transcript_id AT4G00124.1  protein_id AT4G00124.1p  transcript_id AT4G00124.1  
At4g00130	chr4:000048414	0.0	W/48414-48506,48577-49068	AT4G00130.1  CDS  gene_syn F6N15.6, F6N15_6  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: transcription regulator (TAIR:AT4G25210.1); Has 54 Blast hits to 54 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G00130.1p  transcript_id AT4G00130.1  protein_id AT4G00130.1p  transcript_id AT4G00130.1  
At4g00140	chr4:000053279	0.0	C/53279-53449,52760-52859,52320-52523,51166-51464	AT4G00140.1  CDS  gene_syn EDA34, F6N15.19, F6N15_19, embryo sac development arrest 34  gene EDA34  go_component chloroplast|GO:0009507||IEA  go_process polar nucleus fusion|GO:0010197|15634699|IMP  product EDA34 (embryo sac development arrest 34)  note embryo sac development arrest 34 (EDA34); INVOLVED IN: polar nucleus fusion; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: calmodulin-related (TAIR:AT1G73440.1); Has 44 Blast hits to 31 proteins in 9 species: Archae - 1; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G00140.1p  transcript_id AT4G00140.1  protein_id AT4G00140.1p  transcript_id AT4G00140.1  
At4g00150	chr4:000057429	0.0	C/57429-59105	AT4G00150.1  CDS  gene_syn F6N15.20, F6N15_20  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product scarecrow-like transcription factor 6 (SCL6)  note scarecrow-like transcription factor 6 (SCL6); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: scarecrow transcription factor family protein (TAIR:AT2G45160.1); Has 1254 Blast hits to 1234 proteins in 182 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1252; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G00150.1p  transcript_id AT4G00150.1  protein_id AT4G00150.1p  transcript_id AT4G00150.1  
At4g00160	chr4:000063465	0.0	W/63465-63475,63850-64726,64801-64935,65027-65365	AT4G00160.1  CDS  gene_syn F6N15.5, F6N15_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G52680.2); Has 1428 Blast hits to 1395 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1428; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G00160.1p  transcript_id AT4G00160.1  protein_id AT4G00160.1p  transcript_id AT4G00160.1  
At4g00165	chr4:000069433	0.0	C/69433-69819	AT4G00165.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process lipid transport|GO:0006869||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: N-terminal protein myristoylation, lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT2G45180.1); Has 518 Blast hits to 514 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 518; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G00165.1p  transcript_id AT4G00165.1  protein_id AT4G00165.1p  transcript_id AT4G00165.1  
At4g00165	chr4:000069433	0.0	C/69433-69819	AT4G00165.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT2G45180.1); Has 518 Blast hits to 514 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 518; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G00165.2p  transcript_id AT4G00165.2  protein_id AT4G00165.2p  transcript_id AT4G00165.2  
At4g00170	chr4:000072034	0.0	C/72034-72085,71820-71893,71658-71739,71457-71572,71210-71371,71099-71140,70933-71010,70732-70845	AT4G00170.1  CDS  gene_syn F6N15.21, F6N15_21  go_function structural molecule activity|GO:0005198||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function structural molecule activity|GO:0005198||ISS  product vesicle-associated membrane family protein / VAMP family protein  note vesicle-associated membrane family protein / VAMP family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Vesicle-associated membrane protein (InterPro:IPR016763); BEST Arabidopsis thaliana protein match is: VAP (VESICLE ASSOCIATED PROTEIN); protein binding (TAIR:AT3G60600.1); Has 758 Blast hits to 742 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 363; Fungi - 101; Plants - 232; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT4G00170.1p  transcript_id AT4G00170.1  protein_id AT4G00170.1p  transcript_id AT4G00170.1  
At4g00180	chr4:000074697	0.0	C/74697-74888,74268-74427,73659-73707,73448-73523,72990-73067,72804-72878	AT4G00180.2  CDS  gene_syn F6N15.22, F6N15_22, YAB3, YABBY3  gene YAB3  function YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.  go_process fruit development|GO:0010154|16192305|IMP  go_process abaxial cell fate specification|GO:0010158|16192305|IGI  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|10457020|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein binding|GO:0005515|15299139|IPI  product YAB3 (YABBY3); protein binding / transcription factor  note YABBY3 (YAB3); FUNCTIONS IN: protein binding, transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: AFO (ABNORMAL FLORAL ORGANS); protein binding / transcription factor/ transcription regulator (TAIR:AT2G45190.1); Has 339 Blast hits to 339 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 4; Plants - 316; Viruses - 2; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT4G00180.2p  transcript_id AT4G00180.2  protein_id AT4G00180.2p  transcript_id AT4G00180.2  
At4g00180	chr4:000074976	0.0	C/74976-75089,74697-74867,74268-74427,73659-73707,73448-73523,72990-73067,72804-72878	AT4G00180.1  CDS  gene_syn F6N15.22, F6N15_22, YAB3, YABBY3  gene YAB3  function YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.  go_process fruit development|GO:0010154|16192305|IMP  go_process abaxial cell fate specification|GO:0010158|16192305|IGI  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|10457020|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein binding|GO:0005515|15299139|IPI  product YAB3 (YABBY3); protein binding / transcription factor  note YABBY3 (YAB3); FUNCTIONS IN: protein binding, transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: AFO (ABNORMAL FLORAL ORGANS); protein binding / transcription factor/ transcription regulator (TAIR:AT2G45190.1); Has 342 Blast hits to 342 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 4; Plants - 319; Viruses - 2; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT4G00180.1p  transcript_id AT4G00180.1  protein_id AT4G00180.1p  transcript_id AT4G00180.1  
At4g00190	chr4:000081627	0.0	C/81627-82040,81188-81515,80433-81115	AT4G00190.1  CDS  gene_syn A. THALIANA PECTIN METHYLESTERASE 38, ATPME38, F6N15.23, F6N15_23, PECTIN METHYLESTERASE 38, PME38  gene PME38  go_component cell wall|GO:0005618||IEA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase inhibitor (InterPro:IPR006501), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT2G45220.1); Has 1442 Blast hits to 1416 proteins in 268 species: Archae - 4; Bacteria - 418; Metazoa - 1; Fungi - 133; Plants - 865; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT4G00190.1p  transcript_id AT4G00190.1  protein_id AT4G00190.1p  transcript_id AT4G00190.1  
At4g00200	chr4:000083789	0.0	C/83789-84104,83470-83555,83240-83371,83000-83161,82653-82913	AT4G00200.1  CDS  gene_syn F6N15.24, F6N15_24  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding, conserved site (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: DNA-binding family protein (TAIR:AT4G12080.1); Has 439 Blast hits to 437 proteins in 28 species: Archae - 0; Bacteria - 6; Metazoa - 13; Fungi - 0; Plants - 416; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G00200.1p  transcript_id AT4G00200.1  protein_id AT4G00200.1p  transcript_id AT4G00200.1  
At4g00210	chr4:000086598	0.0	C/86598-86888,85693-86064	AT4G00210.1  CDS  gene_syn F6N15.25, F6N15_25, LBD31, LOB DOMAIN-CONTAINING PROTEIN 31  gene LBD31  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product LBD31 (LOB DOMAIN-CONTAINING PROTEIN 31)  note LOB DOMAIN-CONTAINING PROTEIN 31 (LBD31); INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD19 (LOB DOMAIN-CONTAINING PROTEIN 19) (TAIR:AT2G45410.1); Has 573 Blast hits to 570 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 573; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G00210.1p  transcript_id AT4G00210.1  protein_id AT4G00210.1p  transcript_id AT4G00210.1  
At4g00220	chr4:000090147	0.0	W/90147-90455,91710-92087	AT4G00220.1  CDS  gene_syn F6N15.4, F6N15_4, JAGGED LATERAL ORGANS, JLO, LBD30, LOB DOMAIN-CONTAINING PROTEIN 30  gene JLO  function Encodes a protein containing a LOB domain that is expressed in embryos, flower primordium and lateral floral organ boundaries. Overexpression is correlated with activation of STM and KNAT1 and down regulation of PIN1 and reduced auxin transport levels. Ectopic expression in plants results in premature termination of the shoot apical meristem and small, lobed leaves.  go_component cellular_component|GO:0005575||ND  go_process xylem histogenesis|GO:0010089|19088331|IMP  go_process organ boundary specification between lateral organs and the meristem|GO:0010199|17557810|IMP  product JLO (JAGGED LATERAL ORGANS)  note JAGGED LATERAL ORGANS (JLO); INVOLVED IN: xylem histogenesis, organ boundary specification between lateral organs and the meristem; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD18 (LOB DOMAIN-CONTAINING PROTEIN 18) (TAIR:AT2G45420.1); Has 579 Blast hits to 576 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 579; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G00220.1p  transcript_id AT4G00220.1  protein_id AT4G00220.1p  transcript_id AT4G00220.1  
At4g00225	chr4:000092644	0.0	C/92644-93147	AT4G00225.1  pseudogenic_transcript  pseudo  note pseudogene, similar to sucrose transporter SUC1, blastp match of 53% identity and 2.0e-09 P-value to GP|28371870|gb|AAO38059.1||AY190281 sucrose transporter SUC1 {Brassica napus}  
At4g00230	chr4:000093935	0.0	W/93935-94039,94151-94242,94369-94466,94557-94700,94791-94896,95202-95715,95790-95887,95966-96190,96273-96381,96460-96673,96745-97289	AT4G00230.1  CDS  gene_syn F6N15.3, F6N15_3, SUBTILISIN-TYPE SERINE ENDOPEPTIDASE XSP1, XSP1, xylem serine peptidase 1  gene XSP1  go_component cell wall|GO:0005618|15593128|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product XSP1 (xylem serine peptidase 1); identical protein binding / serine-type endopeptidase  note xylem serine peptidase 1 (XSP1); FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT5G03620.1); Has 5253 Blast hits to 4522 proteins in 800 species: Archae - 148; Bacteria - 2972; Metazoa - 157; Fungi - 410; Plants - 914; Viruses - 0; Other Eukaryotes - 652 (source: NCBI BLink).  protein_id AT4G00230.1p  transcript_id AT4G00230.1  protein_id AT4G00230.1p  transcript_id AT4G00230.1  
At4g00231	chr4:000097528	0.0	W/97528-98107,98203-99050	AT4G00231.1  CDS  gene_syn MEE50, maternal effect embryo arrest 50  gene MEE50  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  product MEE50 (maternal effect embryo arrest 50); binding  note maternal effect embryo arrest 50 (MEE50); FUNCTIONS IN: binding; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); Has 208 Blast hits to 206 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 73; Plants - 18; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT4G00231.1p  transcript_id AT4G00231.1  protein_id AT4G00231.1p  transcript_id AT4G00231.1  
At4g00232	chr4:000100257	0.0	C/100257-100721	AT4G00232.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41765.1); Has 67 Blast hits to 67 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G00232.1p  transcript_id AT4G00232.1  protein_id AT4G00232.1p  transcript_id AT4G00232.1  
At4g00234	chr4:000100919	0.0	W/100919-101436,101515-101788	AT4G00234.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein (TAIR:AT4G00290.1); Has 36 Blast hits to 36 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G00234.1p  transcript_id AT4G00234.1  protein_id AT4G00234.1p  transcript_id AT4G00234.1  
At4g00236	chr4:000102141	0.0	W/102141-103750	AT4G00236.1  pseudogenic_transcript  pseudo  note pseudogene, similar to leaf senescence-associated receptor-like protein kinase, blastp match of 56% identity and 4.7e-52 P-value to GP|9837280|gb|AAG00510.1||AF285172 leaf senescence-associated receptor-like protein kinase {Phaseolus vulgaris}  
At4g00238	chr4:000104092	0.0	C/104092-105129	AT4G00238.1  CDS  go_component nucleolus|GO:0005730|15496452|IDA  go_process biological_process|GO:0008150||ND  product DNA-binding storekeeper protein-related  note DNA-binding storekeeper protein-related; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related (TAIR:AT4G00250.1); Has 798 Blast hits to 547 proteins in 114 species: Archae - 0; Bacteria - 21; Metazoa - 195; Fungi - 132; Plants - 152; Viruses - 3; Other Eukaryotes - 295 (source: NCBI BLink).  protein_id AT4G00238.1p  transcript_id AT4G00238.1  protein_id AT4G00238.1p  transcript_id AT4G00238.1  
At4g00240	chr4:000109531	0.0	C/109531-110718,109059-109175,108794-108988,108299-108547,108075-108143,107838-107985,107383-107531,107032-107208,106752-106949,106380-106673	AT4G00240.1  CDS  gene_syn F5I10.13, PLDBETA2  gene PLDBETA2  function member of C2-PLD subfamily  go_component membrane|GO:0016020||IEA  go_process metabolic process|GO:0008152||IEA  go_process phosphatidylcholine metabolic process|GO:0046470||IEA  go_function phospholipase D activity|GO:0004630|9054397|IDA  go_function phospholipase D activity|GO:0004630||ISS  product PLDBETA2; phospholipase D  note PLDBETA2; FUNCTIONS IN: phospholipase D activity; INVOLVED IN: phosphatidylcholine metabolic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), Phospholipase D (InterPro:IPR015679), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008), Phospholipase D, plant (InterPro:IPR011402), Phospholipase D/Transphosphatidylase (InterPro:IPR001736); BEST Arabidopsis thaliana protein match is: PLDBETA1 (PHOSPHOLIPASE D BETA 1); phospholipase D (TAIR:AT2G42010.1); Has 1678 Blast hits to 1338 proteins in 301 species: Archae - 0; Bacteria - 347; Metazoa - 437; Fungi - 378; Plants - 401; Viruses - 2; Other Eukaryotes - 113 (source: NCBI BLink).  protein_id AT4G00240.1p  transcript_id AT4G00240.1  protein_id AT4G00240.1p  transcript_id AT4G00240.1  
At4g00250	chr4:000112951	0.0	C/112951-113910	AT4G00250.1  CDS  gene_syn A_IG005I10.12, A_IG005I10_12, F5I10.12, F5I10_12  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function transcription regulator activity|GO:0030528|12535344|TAS  product DNA-binding storekeeper protein-related  note DNA-binding storekeeper protein-related; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related (TAIR:AT4G00238.1); Has 484 Blast hits to 439 proteins in 80 species: Archae - 0; Bacteria - 4; Metazoa - 135; Fungi - 94; Plants - 162; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT4G00250.1p  transcript_id AT4G00250.1  protein_id AT4G00250.1p  transcript_id AT4G00250.1  
At4g00260	chr4:000114971	0.0	W/114971-115024,115122-115407,115514-115623,115703-116012,116106-116227,116303-116707,116752-117051	AT4G00260.1  CDS  gene_syn A_IG005I10.15, A_IG005I10_15, F5I10.15, F5I10_15, MEE45, maternal effect embryo arrest 45  gene MEE45  go_component endomembrane system|GO:0012505||IEA  go_function DNA binding|GO:0003677||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product MEE45 (maternal effect embryo arrest 45); DNA binding / transcription factor  note maternal effect embryo arrest 45 (MEE45); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: embryonic development ending in seed dormancy, regulation of transcription, DNA-dependent; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT2G24650.2); Has 218 Blast hits to 96 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 218; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G00260.1p  transcript_id AT4G00260.1  protein_id AT4G00260.1p  transcript_id AT4G00260.1  
At4g00270	chr4:000118235	0.0	C/118235-118468,117477-118151	AT4G00270.1  CDS  gene_syn A_IG005I10.11, A_IG005I10_11, F5I10.11, F5I10_11  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function transcription regulator activity|GO:0030528|12535344|TAS  product DNA-binding storekeeper protein-related  note DNA-binding storekeeper protein-related; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related (TAIR:AT2G25650.1); Has 171 Blast hits to 167 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT4G00270.1p  transcript_id AT4G00270.1  protein_id AT4G00270.1p  transcript_id AT4G00270.1  
At4g00280	chr4:000122813	0.0	C/122813-122851,122651-122712,122409-122523	AT4G00280.1  CDS  gene_syn A_IG005I10.10, A_IG005I10_10, F5I10.10, F5I10_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stamen; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT2G19210.1); Has 18 Blast hits to 18 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G00280.1p  transcript_id AT4G00280.1  protein_id AT4G00280.1p  transcript_id AT4G00280.1  
At4g00290	chr4:000124627	0.0	C/124627-125300,124271-124548,123966-124066,123730-123837,123362-123583,123097-123207	AT4G00290.1  CDS  gene_syn A_IG005I10.9, A_IG005I10_9, F5I10.9, F5I10_9  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020||ISS  product mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein  note mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein; LOCATED IN: chloroplast, membrane, chloroplast envelope; CONTAINS InterPro DOMAIN/s: Mechanosensitive ion channel MscS, transmembrane-2 (InterPro:IPR011014), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00234.1); Has 8044 Blast hits to 8044 proteins in 1230 species: Archae - 282; Bacteria - 5483; Metazoa - 2; Fungi - 2; Plants - 99; Viruses - 0; Other Eukaryotes - 2176 (source: NCBI BLink).  protein_id AT4G00290.1p  transcript_id AT4G00290.1  protein_id AT4G00290.1p  transcript_id AT4G00290.1  
At4g00300	chr4:000126509	0.0	W/126509-127360,127512-128060,129170-130126	AT4G00300.1  CDS  gene_syn A_IG005I10.16, A_IG005I10_16, F5I10.16, F5I10_16  go_process biological_process|GO:0008150||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product fringe-related protein  note fringe-related protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: fringe-related protein (TAIR:AT1G01570.1); Has 542 Blast hits to 538 proteins in 78 species: Archae - 0; Bacteria - 2; Metazoa - 77; Fungi - 107; Plants - 345; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT4G00300.1p  transcript_id AT4G00300.1  protein_id AT4G00300.1p  transcript_id AT4G00300.1  
At4g00305	chr4:000131550	0.0	W/131550-131930	AT4G00305.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: BRH1 (BRASSINOSTEROID-RESPONSIVE RING-H2); protein binding / zinc ion binding (TAIR:AT3G61460.1); Has 4191 Blast hits to 4178 proteins in 184 species: Archae - 0; Bacteria - 0; Metazoa - 1381; Fungi - 314; Plants - 1998; Viruses - 2; Other Eukaryotes - 496 (source: NCBI BLink).  protein_id AT4G00305.1p  transcript_id AT4G00305.1  protein_id AT4G00305.1p  transcript_id AT4G00305.1  
At4g00310	chr4:000133857	0.0	W/133857-134081,134367-134434,134620-135235	AT4G00310.1  CDS  gene_syn A_IG005I10.17, A_IG005I10_17, EDA8, EMBRYO SAC DEVELOPMENT ARREST 8, F5I10.17, F5I10_17, MATERNAL EFFECT EMBRYO ARREST 46, MEE46  gene EDA8  go_component cellular_component|GO:0005575||ND  go_process megagametogenesis|GO:0009561|15634699|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function molecular_function|GO:0003674||ND  product EDA8 (EMBRYO SAC DEVELOPMENT ARREST 8)  note EMBRYO SAC DEVELOPMENT ARREST 8 (EDA8); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy, megagametogenesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: seed; EXPRESSED DURING: E expanded cotyledon stage; Has 29 Blast hits to 29 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 7; Plants - 17; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G00310.1p  transcript_id AT4G00310.1  protein_id AT4G00310.1p  transcript_id AT4G00310.1  
At4g00310	chr4:000133857	0.0	W/133857-134081,134367-134434,134620-135235	AT4G00310.2  CDS  gene_syn A_IG005I10.17, A_IG005I10_17, EDA8, EMBRYO SAC DEVELOPMENT ARREST 8, F5I10.17, F5I10_17, MATERNAL EFFECT EMBRYO ARREST 46, MEE46  gene EDA8  go_component cellular_component|GO:0005575||ND  go_process megagametogenesis|GO:0009561|15634699|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function molecular_function|GO:0003674||ND  product EDA8 (EMBRYO SAC DEVELOPMENT ARREST 8)  note EMBRYO SAC DEVELOPMENT ARREST 8 (EDA8); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy, megagametogenesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: seed; EXPRESSED DURING: E expanded cotyledon stage; Has 29 Blast hits to 29 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 7; Plants - 17; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G00310.2p  transcript_id AT4G00310.2  protein_id AT4G00310.2p  transcript_id AT4G00310.2  
At4g00315	chr4:000137404	0.0	W/137404-138300,138379-138519,138601-138888	AT4G00315.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G55660.1); Has 1469 Blast hits to 1428 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 0; Plants - 1462; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G00315.1p  transcript_id AT4G00315.1  protein_id AT4G00315.1p  transcript_id AT4G00315.1  
At4g00320	chr4:000139939	0.0	W/139939-140916,141010-141150,141239-141643	AT4G00320.1  CDS  gene_syn A_IG005I10.18, A_IG005I10_18, F5I10.18, F5I10_18  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein-related (TAIR:AT5G41830.1); Has 1116 Blast hits to 1083 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1116; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G00320.1p  transcript_id AT4G00320.1  protein_id AT4G00320.1p  transcript_id AT4G00320.1  
At4g00330	chr4:000144199	0.0	C/144199-144427,143891-144114,143644-143818,143475-143564,143085-143386,142787-143002	AT4G00330.1  CDS  gene_syn A_IG005I10.8, A_IG005I10_8, CRCK2, F5I10.8, F5I10_8  gene CRCK2  function high overall homology to CRCK1  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_process pollen development|GO:0009555|19237690|IMP  go_function kinase activity|GO:0016301||ISS  product CRCK2; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note CRCK2; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: pollen development; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CRCK1 (CALMODULIN-BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G58940.1); Has 88473 Blast hits to 87404 proteins in 3283 species: Archae - 72; Bacteria - 8193; Metazoa - 38449; Fungi - 6964; Plants - 19221; Viruses - 427; Other Eukaryotes - 15147 (source: NCBI BLink).  protein_id AT4G00330.1p  transcript_id AT4G00330.1  protein_id AT4G00330.1p  transcript_id AT4G00330.1  
At4g00335	chr4:000146866	0.0	W/146866-146928,147195-147564,147654-147763,147933-147962	AT4G00335.1  CDS  gene_syn RHB1A, RING-H2 FINGER PROTEIN RHB1A  gene RHB1A  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product RHB1A; protein binding / zinc ion binding  note RHB1A; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G41350.1); Has 3768 Blast hits to 3762 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 1338; Fungi - 286; Plants - 1392; Viruses - 4; Other Eukaryotes - 748 (source: NCBI BLink).  protein_id AT4G00335.1p  transcript_id AT4G00335.1  protein_id AT4G00335.1p  transcript_id AT4G00335.1  
At4g00335	chr4:000146866	0.0	W/146866-146928,147195-147564,147654-147763,147933-147962	AT4G00335.2  CDS  gene_syn RHB1A, RING-H2 FINGER PROTEIN RHB1A  gene RHB1A  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product RHB1A; protein binding / zinc ion binding  note RHB1A; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G41350.1); Has 3768 Blast hits to 3762 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 1338; Fungi - 286; Plants - 1392; Viruses - 4; Other Eukaryotes - 748 (source: NCBI BLink).  protein_id AT4G00335.2p  transcript_id AT4G00335.2  protein_id AT4G00335.2p  transcript_id AT4G00335.2  
At4g00335	chr4:000146866	0.0	W/146866-146928,147195-147564,147654-147765,147933-147957	AT4G00335.3  CDS  gene_syn RHB1A, RING-H2 FINGER PROTEIN RHB1A  gene RHB1A  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product RHB1A; protein binding / zinc ion binding  note RHB1A; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G41350.1); Has 3113 Blast hits to 3113 proteins in 175 species: Archae - 0; Bacteria - 0; Metazoa - 1196; Fungi - 204; Plants - 1110; Viruses - 4; Other Eukaryotes - 599 (source: NCBI BLink).  protein_id AT4G00335.3p  transcript_id AT4G00335.3  protein_id AT4G00335.3p  transcript_id AT4G00335.3  
At4g00340	chr4:000148958	0.0	W/148958-151053,151136-151496	AT4G00340.1  CDS  gene_syn A_IG005I10.19, A_IG005I10_19, RECEPTOR-LIKE PROTEIN KINASE 4, RLK4  gene RLK4  function Encodes a receptor-like protein kinase that is expressed in roots.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|8220453|ISS  go_process protein amino acid phosphorylation|GO:0006468|8220453|ISS  go_function protein kinase activity|GO:0004672|8220453|ISS  go_function sugar binding|GO:0005529||ISS  product RLK4 (RECEPTOR-LIKE PROTEIN KINASE 4); protein kinase/ sugar binding  note RECEPTOR-LIKE PROTEIN KINASE 4 (RLK4); FUNCTIONS IN: sugar binding, protein kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), N/apple PAN (InterPro:IPR003014), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT2G19130.1); Has 1657 Blast hits to 1610 proteins in 64 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1656; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G00340.1p  transcript_id AT4G00340.1  protein_id AT4G00340.1p  transcript_id AT4G00340.1  
At4g00342	chr4:000151733	0.0	C/151733-151912	AT4G00342.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G00342.1p  transcript_id AT4G00342.1  protein_id AT4G00342.1p  transcript_id AT4G00342.1  
At4g00350	chr4:000151978	0.0	W/151978-152406,152491-153116,153194-153250,153320-153677,153749-153835,153917-153988	AT4G00350.1  CDS  gene_syn A_IG005I10.20, A_IG005I10_20, F5I10.20, F5I10_20  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT4G25640.1); Has 5603 Blast hits to 5531 proteins in 1072 species: Archae - 100; Bacteria - 3671; Metazoa - 119; Fungi - 210; Plants - 712; Viruses - 0; Other Eukaryotes - 791 (source: NCBI BLink).  protein_id AT4G00350.1p  transcript_id AT4G00350.1  protein_id AT4G00350.1p  transcript_id AT4G00350.1  
At4g00355	chr4:000155207	0.0	W/155207-155902,155986-156090	AT4G00355.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 59 Blast hits to 56 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G00355.1p  transcript_id AT4G00355.1  protein_id AT4G00355.1p  transcript_id AT4G00355.1  
At4g00355	chr4:000155207	0.0	W/155207-155902,155986-156090	AT4G00355.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 59 Blast hits to 56 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G00355.2p  transcript_id AT4G00355.2  protein_id AT4G00355.2p  transcript_id AT4G00355.2  
At4g00355	chr4:000155207	0.0	W/155207-155902,155986-156090	AT4G00355.3  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 59 Blast hits to 56 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G00355.3p  transcript_id AT4G00355.3  protein_id AT4G00355.3p  transcript_id AT4G00355.3  
At4g00355	chr4:000155207	0.0	W/155207-156001	AT4G00355.4  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 54 Blast hits to 51 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G00355.4p  transcript_id AT4G00355.4  protein_id AT4G00355.4p  transcript_id AT4G00355.4  
At4g00356	chr4:000156574	0.0	C/156574-156729	AT4G00356.1  pseudogenic_transcript  pseudo  function Encodes a defensin-like (DEFL) family protein.  
At4g00360	chr4:000160951	0.0	W/160951-161372,161539-162778	AT4G00360.1  CDS  gene_syn ABERRANT INDUCTION OF TYPE THREE 1, ATT1, A_IG005I10.21, A_IG005I10_21, CYP86A2, CYTOCHROME P450 86 A2, F5I10.21, F5I10_21  gene CYP86A2  function Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at moderate levels in flowers, leaves, roots and stems.  go_process fatty acid metabolic process|GO:0006631|15709153|IDA  go_function fatty acid (omega-1)-hydroxylase activity|GO:0008393|15709153|IDA  go_function oxygen binding|GO:0019825||ISS  product CYP86A2 (CYTOCHROME P450 86 A2); fatty acid (omega-1)-hydroxylase/ oxygen binding  note CYTOCHROME P450 86 A2 (CYP86A2); FUNCTIONS IN: fatty acid (omega-1)-hydroxylase activity, oxygen binding; INVOLVED IN: fatty acid metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP86A4; fatty acid (omega-1)-hydroxylase/ oxygen binding (TAIR:AT1G01600.1); Has 20306 Blast hits to 20251 proteins in 1086 species: Archae - 19; Bacteria - 1490; Metazoa - 9337; Fungi - 4010; Plants - 4757; Viruses - 3; Other Eukaryotes - 690 (source: NCBI BLink).  protein_id AT4G00360.1p  transcript_id AT4G00360.1  protein_id AT4G00360.1p  transcript_id AT4G00360.1  
At4g00370	chr4:000166057	0.0	C/166057-166111,165835-165894,165423-165754,165233-165340,164974-165129,164667-164882,164363-164572,164127-164264,163838-163939,163523-163588,163356-163440,163153-163250	AT4G00370.1  CDS  gene_syn ANTR2, A_IG005I10.NN, A_IG005I10_NN, F5I10.7, F5I10_7, PHT4;4, anion transporter 2  gene ANTR2  function Encodes an inorganic phosphate transporter (PHT4;4).  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastid|GO:0009536|18086223|IDA  go_function inorganic phosphate transmembrane transporter activity|GO:0005315|18086223|IDA  go_function organic anion transmembrane transporter activity|GO:0008514||ISS  product ANTR2; inorganic phosphate transmembrane transporter/ organic anion transmembrane transporter  note ANTR2; FUNCTIONS IN: organic anion transmembrane transporter activity, inorganic phosphate transmembrane transporter activity; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: PHT4;1; carbohydrate transmembrane transporter/ inorganic diphosphate transmembrane transporter/ inorganic phosphate transmembrane transporter/ organic anion transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT2G29650.1); Has 22650 Blast hits to 22575 proteins in 1363 species: Archae - 271; Bacteria - 16570; Metazoa - 2284; Fungi - 1040; Plants - 222; Viruses - 0; Other Eukaryotes - 2263 (source: NCBI BLink).  protein_id AT4G00370.1p  transcript_id AT4G00370.1  protein_id AT4G00370.1p  transcript_id AT4G00370.1  
At4g00380	chr4:000167959	0.0	W/167959-168862,168946-169127,169242-169331,169417-169704,169807-170019,170218-170448	AT4G00380.1  CDS  gene_syn A_IG005I10.22, A_IG005I10_22, F5I10.22, F5I10_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product XH/XS domain-containing protein / XS zinc finger domain-containing protein  note XH/XS domain-containing protein / XS zinc finger domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Region of unknown function XS (InterPro:IPR005380), Region of unknown function XH (InterPro:IPR005379), Region of unknown function, putative Zinc finger, XS and XH (InterPro:IPR005381); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein / XS zinc finger domain-containing protein (TAIR:AT1G15910.1); Has 43654 Blast hits to 26044 proteins in 1314 species: Archae - 354; Bacteria - 3889; Metazoa - 22834; Fungi - 2647; Plants - 1184; Viruses - 191; Other Eukaryotes - 12555 (source: NCBI BLink).  protein_id AT4G00380.1p  transcript_id AT4G00380.1  protein_id AT4G00380.1p  transcript_id AT4G00380.1  
At4g00390	chr4:000171650	0.0	C/171650-172744	AT4G00390.1  CDS  gene_syn A_IG005I10.6, A_IG005I10_6, F5I10.6, F5I10_6  go_component nucleolus|GO:0005730|15496452|IDA  go_function transcription regulator activity|GO:0030528|12535344|TAS  product transcription regulator  note transcription regulator; FUNCTIONS IN: transcription regulator activity; LOCATED IN: nucleolus; EXPRESSED IN: seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related (TAIR:AT1G61730.1); Has 16329 Blast hits to 5920 proteins in 603 species: Archae - 16; Bacteria - 3796; Metazoa - 3910; Fungi - 2315; Plants - 444; Viruses - 200; Other Eukaryotes - 5648 (source: NCBI BLink).  protein_id AT4G00390.1p  transcript_id AT4G00390.1  protein_id AT4G00390.1p  transcript_id AT4G00390.1  
At4g00400	chr4:000176424	0.0	C/176424-176734,176039-176351,175062-175536,174312-174715	AT4G00400.1  CDS  gene_syn A_IG005I10.4, A_IG005I10_4, F5I10.4, F5I10_4, GPAT8, glycerol-3-phosphate acyltransferase 8  gene GPAT8  function Involved in cutin assembly. Is functional redundant of GPAT4.  go_process metabolic process|GO:0008152||ISS  go_process cutin biosynthetic process|GO:0010143|17991776|IMP  go_function glycerol-3-phosphate O-acyltransferase activity|GO:0004366|17991776|NAS  go_function acyltransferase activity|GO:0008415||ISS  product GPAT8 (glycerol-3-phosphate acyltransferase 8); acyltransferase/ glycerol-3-phosphate O-acyltransferase  note glycerol-3-phosphate acyltransferase 8 (GPAT8); FUNCTIONS IN: glycerol-3-phosphate O-acyltransferase activity, acyltransferase activity; INVOLVED IN: cutin biosynthetic process, metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: GPAT4 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 4); 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase (TAIR:AT1G01610.1); Has 201 Blast hits to 197 proteins in 18 species: Archae - 0; Bacteria - 6; Metazoa - 7; Fungi - 0; Plants - 182; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G00400.1p  transcript_id AT4G00400.1  protein_id AT4G00400.1p  transcript_id AT4G00400.1  
At4g00413	chr4:000178039	0.0	C/178039-178161	AT4G00413.1  pseudogenic_transcript  pseudo  note pseudogene, similar to tomato ripening associated membrane protein, blastp match of 91% identity and 4.3e-11 P-value to GP|395044|emb|CAA52067.1||X73847 tomato ripening associated membrane protein {Lycopersicon esculentum}  
At4g00416	chr4:000179022	0.0	W/179022-179513	AT4G00416.1  CDS  gene_syn MBD3  gene MBD3  function Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.  go_component nucleus|GO:0005634||IEA  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  go_function methyl-CpG binding|GO:0008327|12787239|ISS  product MBD3; DNA binding / methyl-CpG binding  note MBD3; FUNCTIONS IN: methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: MBD4; DNA binding / DNA demethylase/ methyl-CpG binding (TAIR:AT3G63030.1); Has 60 Blast hits to 59 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G00416.1p  transcript_id AT4G00416.1  protein_id AT4G00416.1p  transcript_id AT4G00416.1  
At4g00420	chr4:000182243	0.0	C/182243-182408,181841-181952,181518-181746	AT4G00420.3  CDS  gene_syn A_IG005I10.3, A_IG005I10_3, F5I10.3, F5I10_3  go_component intracellular|GO:0005622||IEA  go_function double-stranded RNA binding|GO:0003725||IEA  go_process biological_process|GO:0008150||ND  go_function double-stranded RNA binding|GO:0003725||ISS  product double-stranded RNA-binding domain (DsRBD)-containing protein  note double-stranded RNA-binding domain (DsRBD)-containing protein; FUNCTIONS IN: double-stranded RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA binding (InterPro:IPR001159); BEST Arabidopsis thaliana protein match is: RTL1 (RNase three-like protein 1); RNA binding / double-stranded RNA binding (TAIR:AT1G80650.1); Has 35 Blast hits to 35 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G00420.3p  transcript_id AT4G00420.3  protein_id AT4G00420.3p  transcript_id AT4G00420.3  
At4g00420	chr4:000182576	0.0	C/182576-182629,182243-182420,181841-181949,181518-181746	AT4G00420.1  CDS  gene_syn A_IG005I10.3, A_IG005I10_3, F5I10.3, F5I10_3  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_function RNA binding|GO:0003723||IEA  go_function double-stranded RNA binding|GO:0003725||IEA  go_process biological_process|GO:0008150||ND  go_function double-stranded RNA binding|GO:0003725||ISS  product double-stranded RNA-binding domain (DsRBD)-containing protein  note double-stranded RNA-binding domain (DsRBD)-containing protein; FUNCTIONS IN: double-stranded RNA binding, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: RTL1 (RNase three-like protein 1); RNA binding / double-stranded RNA binding (TAIR:AT1G80650.1); Has 31 Blast hits to 31 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G00420.1p  transcript_id AT4G00420.1  protein_id AT4G00420.1p  transcript_id AT4G00420.1  
At4g00420	chr4:000182576	0.0	C/182576-182629,182243-182420,181841-181952,181518-181746	AT4G00420.2  CDS  gene_syn A_IG005I10.3, A_IG005I10_3, F5I10.3, F5I10_3  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_function RNA binding|GO:0003723||IEA  go_function double-stranded RNA binding|GO:0003725||IEA  go_process biological_process|GO:0008150||ND  go_function double-stranded RNA binding|GO:0003725||ISS  product double-stranded RNA-binding domain (DsRBD)-containing protein  note double-stranded RNA-binding domain (DsRBD)-containing protein; FUNCTIONS IN: double-stranded RNA binding, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: RTL1 (RNase three-like protein 1); RNA binding / double-stranded RNA binding (TAIR:AT1G80650.1); Has 35 Blast hits to 35 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G00420.2p  transcript_id AT4G00420.2  protein_id AT4G00420.2p  transcript_id AT4G00420.2  
At4g00430	chr4:000187201	0.0	C/187201-187531,186569-186897	AT4G00430.2  CDS  gene_syn A_IG005I10.2, A_IG005I10_2, F5I10.2, F5I10_2, PIP1;4, PIP1E, PLASMA MEMBRANE INTRINSIC PROTEIN 1;4, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, TMP-C, TRANSMEMBRANE PROTEIN C  gene PIP1;4  function a member of the plasma membrane intrinsic protein subfamily PIP1.  go_component membrane|GO:0016020|17432890|IDA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_process response to water deprivation|GO:0009414|16235111|IEP  go_function water channel activity|GO:0015250|11500536|ISS  go_function water channel activity|GO:0015250||ISS  product PIP1;4 (PLASMA MEMBRANE INTRINSIC PROTEIN 1;4); water channel  note TRANSMEMBRANE PROTEIN C (TMP-C); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, response to water deprivation; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C); water channel (TAIR:AT1G01620.1); Has 5972 Blast hits to 5949 proteins in 1162 species: Archae - 69; Bacteria - 2374; Metazoa - 1060; Fungi - 241; Plants - 1398; Viruses - 0; Other Eukaryotes - 830 (source: NCBI BLink).  protein_id AT4G00430.2p  transcript_id AT4G00430.2  protein_id AT4G00430.2p  transcript_id AT4G00430.2  
At4g00430	chr4:000187201	0.0	C/187201-187531,186602-186897,186333-186473,186143-186238	AT4G00430.1  CDS  gene_syn A_IG005I10.2, A_IG005I10_2, F5I10.2, F5I10_2, PIP1;4, PIP1E, PLASMA MEMBRANE INTRINSIC PROTEIN 1;4, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, TMP-C, TRANSMEMBRANE PROTEIN C  gene PIP1;4  function a member of the plasma membrane intrinsic protein subfamily PIP1.  go_component plasma membrane|GO:0005886|15060130|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_process response to water deprivation|GO:0009414|16235111|IEP  go_function water channel activity|GO:0015250|11500536|ISS  go_function water channel activity|GO:0015250||ISS  product PIP1;4 (PLASMA MEMBRANE INTRINSIC PROTEIN 1;4); water channel  note PLASMA MEMBRANE INTRINSIC PROTEIN 1;4 (PIP1;4); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, response to water deprivation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C); water channel (TAIR:AT1G01620.1); Has 6684 Blast hits to 6670 proteins in 1252 species: Archae - 65; Bacteria - 2615; Metazoa - 1273; Fungi - 284; Plants - 1492; Viruses - 2; Other Eukaryotes - 953 (source: NCBI BLink).  protein_id AT4G00430.1p  transcript_id AT4G00430.1  protein_id AT4G00430.1p  transcript_id AT4G00430.1  
At4g00440	chr4:000195176	0.0	W/195176-195311,195401-195471,195562-196915,196991-197121,197230-197416,197503-198112,198207-198225	AT4G00440.2  CDS  gene_syn A_IG005I10.23, A_IG005I10_23, F5I10.23, F5I10_23  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45900.1); Has 1118 Blast hits to 904 proteins in 123 species: Archae - 0; Bacteria - 59; Metazoa - 244; Fungi - 59; Plants - 138; Viruses - 0; Other Eukaryotes - 618 (source: NCBI BLink).  protein_id AT4G00440.2p  transcript_id AT4G00440.2  protein_id AT4G00440.2p  transcript_id AT4G00440.2  
At4g00440	chr4:000195176	0.0	W/195176-195311,195401-195471,195562-196915,196991-197121,197230-197416,197503-198112,198212-198221	AT4G00440.3  CDS  gene_syn A_IG005I10.23, A_IG005I10_23, F5I10.23, F5I10_23  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45900.1); Has 1118 Blast hits to 904 proteins in 123 species: Archae - 0; Bacteria - 59; Metazoa - 244; Fungi - 59; Plants - 138; Viruses - 0; Other Eukaryotes - 618 (source: NCBI BLink).  protein_id AT4G00440.3p  transcript_id AT4G00440.3  protein_id AT4G00440.3p  transcript_id AT4G00440.3  
At4g00440	chr4:000195176	0.0	W/195176-195311,195401-195471,195562-196915,196991-197121,197230-197416,197503-198119	AT4G00440.1  CDS  gene_syn A_IG005I10.23, A_IG005I10_23, F5I10.23, F5I10_23  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45900.1); Has 1063 Blast hits to 879 proteins in 125 species: Archae - 0; Bacteria - 56; Metazoa - 239; Fungi - 55; Plants - 138; Viruses - 0; Other Eukaryotes - 575 (source: NCBI BLink).  protein_id AT4G00440.1p  transcript_id AT4G00440.1  protein_id AT4G00440.1p  transcript_id AT4G00440.1  
At4g00450	chr4:000202425	0.0	W/202425-202549,202633-202692,202907-203012,203378-203446,203551-203604,203724-203828,203968-204137,204198-204542,204594-206942,207040-209649,209796-210108,210211-210666	AT4G00450.1  CDS  gene_syn A_IG005I10.24, A_IG005I10_24, CRP, CRYPTIC PRECOCIOUS, F5I10.24, F5I10_24  gene CRP  function A genetic locus involved in flowering time. The mutant enhances the expression of the flowering time (FT) gene. A knockout mutant of this gene showed late-flowering phenotype.  go_component chloroplast|GO:0009507||IEA  go_process photoperiodism, flowering|GO:0048573||NAS  go_function molecular_function|GO:0003674||ND  product CRP (CRYPTIC PRECOCIOUS)  note CRYPTIC PRECOCIOUS (CRP); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photoperiodism, flowering; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 111 Blast hits to 81 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 22; Plants - 55; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT4G00450.1p  transcript_id AT4G00450.1  protein_id AT4G00450.1p  transcript_id AT4G00450.1  
At4g00460	chr4:000212785	0.0	C/212785-213094,212583-212699,212340-212494,212183-212257,211731-212087	AT4G00460.1  CDS  gene_syn ATROPGEF3, A_IG005I10.1, A_IG005I10_1, KINASE PARTNER PROTEIN-LIKE, KPP-LIKE, ROPGEF3  gene ROPGEF3  function Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function Rho guanyl-nucleotide exchange factor activity|GO:0005089|15980860|ISS  product Rho guanyl-nucleotide exchange factor  note ROPGEF3; FUNCTIONS IN: Rho guanyl-nucleotide exchange factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: ROPGEF2; Rho guanyl-nucleotide exchange factor/ protein binding (TAIR:AT1G01700.1); Has 166 Blast hits to 166 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 166; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G00460.1p  transcript_id AT4G00460.1  protein_id AT4G00460.1p  transcript_id AT4G00460.1  
At4g00460	chr4:000212785	0.0	C/212785-213094,212583-212699,212340-212494,212183-212257,211788-212087,211353-211697,211146-211265	AT4G00460.2  CDS  gene_syn ATROPGEF3, A_IG005I10.1, A_IG005I10_1, KINASE PARTNER PROTEIN-LIKE, KPP-LIKE, ROPGEF3  gene ROPGEF3  function Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function Rho guanyl-nucleotide exchange factor activity|GO:0005089|15980860|ISS  product Rho guanyl-nucleotide exchange factor  note ROPGEF3; FUNCTIONS IN: Rho guanyl-nucleotide exchange factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: ROPGEF2; Rho guanyl-nucleotide exchange factor/ protein binding (TAIR:AT1G01700.1); Has 172 Blast hits to 171 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 172; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G00460.2p  transcript_id AT4G00460.2  protein_id AT4G00460.2p  transcript_id AT4G00460.2  
At4g00467	chr4:000216010	0.0	C/216010-216076,215862-215927,215634-215772,215402-215537,215122-215225,214846-214942	AT4G00467.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT3G55470.2); Has 88 Blast hits to 88 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G00467.1p  transcript_id AT4G00467.1  protein_id AT4G00467.1p  transcript_id AT4G00467.1  
At4g00480	chr4:000219536	0.0	C/219536-219684,219122-219409,218685-218781,218545-218559,218344-218400,217754-218242,217265-217675,217106-217180	AT4G00480.1  CDS  gene_syn ATMYC1, F6N23.22, F6N23_22, myc1  gene ATMYC1  function MYC-related protein with a basic helix-loop-helix motif at the C-terminus and a region similar to the maize B/R family at the N-terminus  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677|8980509|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700|8980509|ISS  product myc-related transcription factor (MYC1)  note ATMYC1; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: EGL3 (ENHANCER OF GLABRA 3); DNA binding / transcription factor (TAIR:AT1G63650.2); Has 855 Blast hits to 634 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 841; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT4G00480.1p  transcript_id AT4G00480.1  protein_id AT4G00480.1p  transcript_id AT4G00480.1  
At4g00480	chr4:000219536	0.0	C/219536-219684,219122-219409,218685-218781,218545-218559,218344-218400,217754-218242,217265-217675,217120-217180,216866-217041	AT4G00480.2  CDS  gene_syn ATMYC1, F6N23.22, F6N23_22, myc1  gene ATMYC1  function MYC-related protein with a basic helix-loop-helix motif at the C-terminus and a region similar to the maize B/R family at the N-terminus  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677|8980509|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700|8980509|ISS  product myc-related transcription factor (MYC1)  note ATMYC1; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: EGL3 (ENHANCER OF GLABRA 3); DNA binding / transcription factor (TAIR:AT1G63650.2).  protein_id AT4G00480.2p  transcript_id AT4G00480.2  protein_id AT4G00480.2p  transcript_id AT4G00480.2  
At4g00490	chr4:000222422	0.0	W/222422-222649,222722-222799,222880-223083,223185-223379,223528-223692,223820-224080,224185-224403,224502-224721,224804-224862	AT4G00490.1  CDS  gene_syn BAM2, BETA-AMYLASE 2, BETA-AMYLASE 9, BMY9, F6N23.1, F6N23_1  gene BAM2  function Encodes a chloroplast beta-amylase. The enzyme activity is very weak compared to BAM1 and BAM3. Mutant of BAM2 has no visible phenotype.  go_component chloroplast|GO:0009507|18431481|IDA  go_process polysaccharide catabolic process|GO:0000272||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_component chloroplast|GO:0009507|18390594|IDA  go_function beta-amylase activity|GO:0016161|18390594|IDA  go_function beta-amylase activity|GO:0016161||ISS  product BAM2 (BETA-AMYLASE 2); beta-amylase  note BETA-AMYLASE 2 (BAM2); FUNCTIONS IN: beta-amylase activity; INVOLVED IN: carbohydrate metabolic process, polysaccharide catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14, conserved site (InterPro:IPR018238), Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 14B, plant (InterPro:IPR001371), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BAM7 (BETA-AMYLASE 7); beta-amylase/ catalytic/ cation binding (TAIR:AT2G45880.1); Has 517 Blast hits to 516 proteins in 118 species: Archae - 0; Bacteria - 68; Metazoa - 0; Fungi - 0; Plants - 388; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT4G00490.1p  transcript_id AT4G00490.1  protein_id AT4G00490.1p  transcript_id AT4G00490.1  
At4g00500	chr4:000226274	0.0	C/226274-226978,226130-226188,225899-226027,225667-225802,225214-225567	AT4G00500.1  CDS  gene_syn F6N23.21, F6N23_21  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_process lipid catabolic process|GO:0016042||IEA  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function calmodulin binding|GO:0005516||ISS  product lipase class 3 family protein / calmodulin-binding heat-shock protein-related  note lipase class 3 family protein / calmodulin-binding heat-shock protein-related; FUNCTIONS IN: triacylglycerol lipase activity, calmodulin binding; INVOLVED IN: lipid catabolic process, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921), Mono- and diacylglycerol lipase, N-terminal (InterPro:IPR005592); BEST Arabidopsis thaliana protein match is: lipase class 3 family protein / calmodulin-binding heat-shock protein, putative (TAIR:AT3G49050.1); Has 376 Blast hits to 375 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 42; Plants - 130; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT4G00500.1p  transcript_id AT4G00500.1  protein_id AT4G00500.1p  transcript_id AT4G00500.1  
At4g00500	chr4:000226274	0.0	C/226274-226978,226130-226188,225899-226027,225667-225802,225214-225567	AT4G00500.2  CDS  gene_syn F6N23.21, F6N23_21  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_process lipid catabolic process|GO:0016042||IEA  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function calmodulin binding|GO:0005516||ISS  product lipase class 3 family protein / calmodulin-binding heat-shock protein-related  note lipase class 3 family protein / calmodulin-binding heat-shock protein-related; FUNCTIONS IN: triacylglycerol lipase activity, calmodulin binding; INVOLVED IN: lipid catabolic process, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921), Mono- and diacylglycerol lipase, N-terminal (InterPro:IPR005592); BEST Arabidopsis thaliana protein match is: lipase class 3 family protein / calmodulin-binding heat-shock protein, putative (TAIR:AT3G49050.1); Has 376 Blast hits to 375 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 42; Plants - 130; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT4G00500.2p  transcript_id AT4G00500.2  protein_id AT4G00500.2p  transcript_id AT4G00500.2  
At4g00520	chr4:000227726	0.0	W/227726-227741,227859-227951,228140-228207,228320-228395,228494-228540,228653-228769,228986-229063,229211-229298,229449-229561,229700-229762,229838-229893,229972-230076,230173-230232,230503-230604,230805-230853,231243-231311,231417-231494	AT4G00520.2  CDS  go_process acyl-CoA metabolic process|GO:0006637||IEA  go_function acyl-CoA thioesterase activity|GO:0016291||IEA  product acyl-CoA thioesterase family protein  note acyl-CoA thioesterase family protein; FUNCTIONS IN: acyl-CoA thioesterase activity; INVOLVED IN: acyl-CoA metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Acyl-CoA thioesterase (InterPro:IPR003703), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: acyl-CoA thioesterase family protein (TAIR:AT1G01710.1); Has 2409 Blast hits to 2399 proteins in 576 species: Archae - 0; Bacteria - 1072; Metazoa - 364; Fungi - 190; Plants - 32; Viruses - 0; Other Eukaryotes - 751 (source: NCBI BLink).  protein_id AT4G00520.2p  transcript_id AT4G00520.2  protein_id AT4G00520.2p  transcript_id AT4G00520.2  
At4g00520	chr4:000227726	0.0	W/227726-227741,227859-227951,228140-228207,228320-228395,228494-228540,228653-228769,228986-229063,229211-229298,229449-229561,229700-229762,229838-229893,229972-230076,230173-230232,230503-230604,230805-230853,231247-231249	AT4G00520.3  CDS  go_process acyl-CoA metabolic process|GO:0006637||IEA  go_function acyl-CoA thioesterase activity|GO:0016291||IEA  product acyl-CoA thioesterase family protein  note acyl-CoA thioesterase family protein; FUNCTIONS IN: acyl-CoA thioesterase activity; INVOLVED IN: acyl-CoA metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Acyl-CoA thioesterase (InterPro:IPR003703), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: acyl-CoA thioesterase family protein (TAIR:AT1G01710.1); Has 2337 Blast hits to 2337 proteins in 578 species: Archae - 0; Bacteria - 1076; Metazoa - 365; Fungi - 169; Plants - 32; Viruses - 0; Other Eukaryotes - 695 (source: NCBI BLink).  protein_id AT4G00520.3p  transcript_id AT4G00520.3  protein_id AT4G00520.3p  transcript_id AT4G00520.3  
At4g00525	chr4:000231862	0.0	W/231862-232087,232573-232769	AT4G00525.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 12 Blast hits to 12 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G00525.1p  transcript_id AT4G00525.1  protein_id AT4G00525.1p  transcript_id AT4G00525.1  
At4g00530	chr4:000233479	0.0	C/233479-233553,233290-233342,233189-233243,233030-233131	AT4G00530.1  CDS  gene_syn F6N23.20, F6N23_20  go_component mitochondrion|GO:0005739|15276431|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G00530.1p  transcript_id AT4G00530.1  protein_id AT4G00530.1p  transcript_id AT4G00530.1  
At4g00540	chr4:000237259	0.0	C/237259-237356,236959-237013,236826-236883,236626-236735,236427-236539,236196-236324,235807-236126,235407-235725,234597-234708	AT4G00540.1  CDS  gene_syn ATMYB3R2, C-MYB-LIKE TRANSCRIPTION FACTOR 3R-2, F6N23.19, F6N23_19, MYB DOMAIN PROTEIN 3R2, MYB3R-2, PC-MYB2  gene ATMYB3R2  function Encodes a putative c-myb-like transcription factor. Member of a class of domain proteins containing structural features of the vertebrate c-Myb proto-oncoprotein, including the presence of three Myb motifs (R1,R2,R3).  go_process regulation of transcription, DNA-dependent|GO:0006355|11597504|ISS  go_function DNA binding|GO:0003677|11597504|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ATMYB3R2 (MYB DOMAIN PROTEIN 3R2); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 3R2 (ATMYB3R2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: PC-MYB1; DNA binding / transcription coactivator/ transcription factor (TAIR:AT4G32730.2); Has 9197 Blast hits to 5669 proteins in 368 species: Archae - 0; Bacteria - 0; Metazoa - 884; Fungi - 631; Plants - 5021; Viruses - 4; Other Eukaryotes - 2657 (source: NCBI BLink).  protein_id AT4G00540.1p  transcript_id AT4G00540.1  protein_id AT4G00540.1p  transcript_id AT4G00540.1  
At4g00540	chr4:000237259	0.0	C/237259-237356,236959-237019,236826-236883,236626-236735,236427-236539,236196-236324,235807-236126,235403-235731	AT4G00540.2  CDS  gene_syn ATMYB3R2, C-MYB-LIKE TRANSCRIPTION FACTOR 3R-2, F6N23.19, F6N23_19, MYB DOMAIN PROTEIN 3R2, MYB3R-2, PC-MYB2  gene ATMYB3R2  function Encodes a putative c-myb-like transcription factor. Member of a class of domain proteins containing structural features of the vertebrate c-Myb proto-oncoprotein, including the presence of three Myb motifs (R1,R2,R3).  go_process regulation of transcription, DNA-dependent|GO:0006355|11597504|ISS  go_function DNA binding|GO:0003677|11597504|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ATMYB3R2 (MYB DOMAIN PROTEIN 3R2); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 3R2 (ATMYB3R2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: PC-MYB1; DNA binding / transcription coactivator/ transcription factor (TAIR:AT4G32730.2); Has 10031 Blast hits to 5669 proteins in 367 species: Archae - 0; Bacteria - 0; Metazoa - 943; Fungi - 650; Plants - 5686; Viruses - 6; Other Eukaryotes - 2746 (source: NCBI BLink).  protein_id AT4G00540.2p  transcript_id AT4G00540.2  protein_id AT4G00540.2p  transcript_id AT4G00540.2  
At4g00550	chr4:000239732	0.0	C/239732-240019,239295-239561,238765-239114,238154-238670	AT4G00550.1  CDS  gene_syn DGD2, DIGALACTOSYLDIACYLGLYCEROL SYNTHASE, F6N23.24, F6N23_24  gene DGD2  function encodes a UDP-galactose-dependent digalactosyldiacylglycerol(DGDG) synthase. Located in chloroplast outer membrane.  go_component chloroplast outer membrane|GO:0009707|14600212|IDA  go_process cellular response to nitrogen starvation|GO:0006995|17270009|IEP  go_process glycolipid biosynthetic process|GO:0009247|11696551|IDA  go_process cellular response to magnesium starvation|GO:0010350|17270009|IEP  go_process cellular response to phosphate starvation|GO:0016036|10973486|IMP  go_process cellular response to phosphate starvation|GO:0016036|11696551|IEP  go_process galactolipid biosynthetic process|GO:0019375|11696551|IDA  go_function UDP-glycosyltransferase activity|GO:0008194|11696551|IDA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function UDP-galactosyltransferase activity|GO:0035250|15590685|TAS  go_function digalactosyldiacylglycerol synthase activity|GO:0046481|11696551|IDA  product DGD2; UDP-galactosyltransferase/ UDP-glycosyltransferase/ digalactosyldiacylglycerol synthase/ transferase, transferring glycosyl groups  note DGD2; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups, UDP-galactosyltransferase activity, digalactosyldiacylglycerol synthase activity; INVOLVED IN: cellular response to phosphate starvation, cellular response to magnesium starvation, galactolipid biosynthetic process, glycolipid biosynthetic process, cellular response to nitrogen starvation; LOCATED IN: chloroplast outer membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: DGD1 (DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1); UDP-galactosyltransferase/ galactolipid galactosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT3G11670.1); Has 236 Blast hits to 236 proteins in 69 species: Archae - 11; Bacteria - 94; Metazoa - 0; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT4G00550.1p  transcript_id AT4G00550.1  protein_id AT4G00550.1p  transcript_id AT4G00550.1  
At4g00560	chr4:000242031	0.0	C/242031-242267,241743-241902,241459-241646,241135-241155	AT4G00560.2  CDS  gene_syn F6N23.17, F6N23_17  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  product methionine adenosyltransferase regulatory beta subunit-related  note methionine adenosyltransferase regulatory beta subunit-related; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: cellular metabolic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); Has 4108 Blast hits to 4108 proteins in 917 species: Archae - 119; Bacteria - 2201; Metazoa - 101; Fungi - 72; Plants - 23; Viruses - 0; Other Eukaryotes - 1592 (source: NCBI BLink).  protein_id AT4G00560.2p  transcript_id AT4G00560.2  protein_id AT4G00560.2p  transcript_id AT4G00560.2  
At4g00560	chr4:000242031	0.0	C/242031-242267,241743-241902,241459-241646,241194-241370	AT4G00560.3  CDS  gene_syn F6N23.17, F6N23_17  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  product methionine adenosyltransferase regulatory beta subunit-related  note methionine adenosyltransferase regulatory beta subunit-related; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: cellular metabolic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); Has 4538 Blast hits to 4538 proteins in 946 species: Archae - 119; Bacteria - 2402; Metazoa - 101; Fungi - 74; Plants - 23; Viruses - 0; Other Eukaryotes - 1819 (source: NCBI BLink).  protein_id AT4G00560.3p  transcript_id AT4G00560.3  protein_id AT4G00560.3p  transcript_id AT4G00560.3  
At4g00560	chr4:000242031	0.0	C/242031-242267,241743-241902,241459-241646,241247-241370,241025-241155,240798-240941	AT4G00560.1  CDS  gene_syn F6N23.17, F6N23_17  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_process dTDP-rhamnose biosynthetic process|GO:0019305||IEA  go_process extracellular polysaccharide biosynthetic process|GO:0045226||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function dTDP-4-dehydrorhamnose reductase activity|GO:0008831||IEA  product methionine adenosyltransferase regulatory beta subunit-related  note methionine adenosyltransferase regulatory beta subunit-related; FUNCTIONS IN: dTDP-4-dehydrorhamnose reductase activity, binding, catalytic activity; INVOLVED IN: dTDP-rhamnose biosynthetic process, extracellular polysaccharide biosynthetic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), dTDP-4-dehydrorhamnose reductase (InterPro:IPR005913); Has 5283 Blast hits to 5283 proteins in 1010 species: Archae - 187; Bacteria - 2829; Metazoa - 101; Fungi - 79; Plants - 23; Viruses - 0; Other Eukaryotes - 2064 (source: NCBI BLink).  protein_id AT4G00560.1p  transcript_id AT4G00560.1  protein_id AT4G00560.1p  transcript_id AT4G00560.1  
At4g00570	chr4:000246373	0.0	C/246373-246522,246168-246264,245967-246085,245596-245892,245434-245494,245249-245352,245087-245170,244877-244983,244674-244776,244257-244355,244013-244078,243850-243922,243684-243770,243543-243597,243346-243417,243197-243259,242986-243100,242817-242888	AT4G00570.1  CDS  gene_syn F6N23.16, F6N23_16  go_component mitochondrion|GO:0005739|17137349|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process malate metabolic process|GO:0006108||IEA  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process malate metabolic process|GO:0006108||ISS  go_function malic enzyme activity|GO:0004470||ISS  go_function oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor|GO:0016652||ISS  product malate oxidoreductase, putative  note malate oxidoreductase, putative; FUNCTIONS IN: oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor, malic enzyme activity, ATP binding; INVOLVED IN: oxidation reduction, malate metabolic process, metabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Malic oxidoreductase (InterPro:IPR001891), Malic enzyme, NAD-binding (InterPro:IPR012302), Malic enzyme, conserved site (InterPro:IPR015884), Malic enzyme, N-terminal (InterPro:IPR012301), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: malate oxidoreductase, putative (TAIR:AT2G13560.1); Has 5867 Blast hits to 5857 proteins in 1333 species: Archae - 86; Bacteria - 3255; Metazoa - 553; Fungi - 155; Plants - 271; Viruses - 0; Other Eukaryotes - 1547 (source: NCBI BLink).  protein_id AT4G00570.1p  transcript_id AT4G00570.1  protein_id AT4G00570.1p  transcript_id AT4G00570.1  
At4g00580	chr4:000248713	0.0	W/248713-248812,248917-248984,249074-249305,249404-249541,249629-249697,249813-249908,250008-250258	AT4G00580.1  CDS  gene_syn F6N23.4, F6N23_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product COP1-interacting protein-related  note COP1-interacting protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT2G01800.1); Has 2444 Blast hits to 1816 proteins in 226 species: Archae - 6; Bacteria - 114; Metazoa - 675; Fungi - 230; Plants - 145; Viruses - 20; Other Eukaryotes - 1254 (source: NCBI BLink).  protein_id AT4G00580.1p  transcript_id AT4G00580.1  protein_id AT4G00580.1p  transcript_id AT4G00580.1  
At4g00585	chr4:000252108	0.0	C/252108-252284,251157-251246	AT4G00585.1  CDS  go_component mitochondrial membrane|GO:0031966|16407270|IDA  go_component respiratory chain complex I|GO:0045271|16407270|IDA  go_process photorespiration|GO:0009853|16407270|TAS  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrial membrane, respiratory chain complex I; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 29 Blast hits to 29 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 6; Plants - 20; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G00585.1p  transcript_id AT4G00585.1  protein_id AT4G00585.1p  transcript_id AT4G00585.1  
At4g00590	chr4:000252835	0.0	W/252835-252981,253071-253121,253224-253344,253431-253515,253611-253692,253780-254031,254111-254274,254369-254498,254588-254692,254791-254880	AT4G00590.1  CDS  gene_syn F6N23.5, F6N23_5  go_function hydrolase activity|GO:0016787||IEA  product asparaginase 2 family protein  note asparaginase 2 family protein; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase T2, asparaginase 2 (InterPro:IPR000246); BEST Arabidopsis thaliana protein match is: L-asparaginase, putative / L-asparagine amidohydrolase, putative (TAIR:AT3G16150.1); Has 2162 Blast hits to 2119 proteins in 522 species: Archae - 71; Bacteria - 869; Metazoa - 420; Fungi - 151; Plants - 90; Viruses - 0; Other Eukaryotes - 561 (source: NCBI BLink).  protein_id AT4G00590.1p  transcript_id AT4G00590.1  protein_id AT4G00590.1p  transcript_id AT4G00590.1  
At4g00600	chr4:000256352	0.0	C/256352-256610,256145-256242,255820-256056,255571-255738,255320-255490	AT4G00600.1  CDS  gene_syn F6N23.28, F6N23_28  go_component chloroplast|GO:0009507||IEA  go_process metabolic process|GO:0008152||IEA  go_process folic acid and derivative biosynthetic process|GO:0009396||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_process folic acid and derivative biosynthetic process|GO:0009396||ISS  go_function catalytic activity|GO:0003824||ISS  product tetrahydrofolate dehydrogenase/cyclohydrolase, putative  note tetrahydrofolate dehydrogenase/cyclohydrolase, putative; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: folic acid and derivative biosynthetic process, metabolic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Tetrahydrofolate dehydrogenase/cyclohydrolase (InterPro:IPR000672), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: tetrahydrofolate dehydrogenase/cyclohydrolase, putative (TAIR:AT4G00620.1); Has 6813 Blast hits to 6809 proteins in 1555 species: Archae - 77; Bacteria - 3112; Metazoa - 341; Fungi - 197; Plants - 87; Viruses - 0; Other Eukaryotes - 2999 (source: NCBI BLink).  protein_id AT4G00600.1p  transcript_id AT4G00600.1  protein_id AT4G00600.1p  transcript_id AT4G00600.1  
At4g00610	chr4:000256957	0.0	C/256957-257943	AT4G00610.1  CDS  gene_syn F6N23.29, F6N23_29  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function transcription regulator activity|GO:0030528|12535344|TAS  product DNA-binding storekeeper protein-related  note DNA-binding storekeeper protein-related; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: transcription regulator (TAIR:AT1G44810.1); Has 1607 Blast hits to 1219 proteins in 168 species: Archae - 0; Bacteria - 86; Metazoa - 521; Fungi - 288; Plants - 246; Viruses - 8; Other Eukaryotes - 458 (source: NCBI BLink).  protein_id AT4G00610.1p  transcript_id AT4G00610.1  protein_id AT4G00610.1p  transcript_id AT4G00610.1  
At4g00620	chr4:000260608	0.0	C/260608-260788,260130-260455,259816-260052,259546-259713,259265-259435	AT4G00620.1  CDS  gene_syn F6N23.26, F6N23_26  go_component chloroplast|GO:0009507|18431481|IDA  go_process metabolic process|GO:0008152||IEA  go_process folic acid and derivative biosynthetic process|GO:0009396||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_process folic acid and derivative biosynthetic process|GO:0009396||ISS  go_function catalytic activity|GO:0003824||ISS  product tetrahydrofolate dehydrogenase/cyclohydrolase, putative  note tetrahydrofolate dehydrogenase/cyclohydrolase, putative; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: folic acid and derivative biosynthetic process, metabolic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Tetrahydrofolate dehydrogenase/cyclohydrolase (InterPro:IPR000672), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: tetrahydrofolate dehydrogenase/cyclohydrolase, putative (TAIR:AT4G00600.1); Has 7121 Blast hits to 7116 proteins in 1557 species: Archae - 77; Bacteria - 3120; Metazoa - 345; Fungi - 203; Plants - 87; Viruses - 0; Other Eukaryotes - 3289 (source: NCBI BLink).  protein_id AT4G00620.1p  transcript_id AT4G00620.1  protein_id AT4G00620.1p  transcript_id AT4G00620.1  
At4g00630	chr4:000266279	0.0	C/266279-267789,266012-266183,265827-265917,265508-265644,265350-265409,265124-265243,264861-264929,264710-264775,264396-264485,264082-264186,263857-263985,263425-263634,262992-263141,262776-262829,262582-262640,262425-262491,262162-262338,262012-262068,261854-261928,261655-261780	AT4G00630.1  CDS  gene_syn ATKEA2, F6N23.15, F6N23_15, KEA2  gene KEA2  function member of Putative potassium transporter family  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process cation transport|GO:0006812||IEA  go_process potassium ion transport|GO:0006813||IEA  go_process metabolic process|GO:0008152||IEA  go_function potassium ion transmembrane transporter activity|GO:0015079||ISS  go_function potassium:hydrogen antiporter activity|GO:0015386|11500563|NAS  go_function potassium:hydrogen antiporter activity|GO:0015386||ISS  product KEA2; potassium ion transmembrane transporter/ potassium:hydrogen antiporter  note KEA2; FUNCTIONS IN: potassium:hydrogen antiporter activity, potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport, cation transport, metabolic process; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K+/H+ exchanger (InterPro:IPR004771), Cation/H+ exchanger (InterPro:IPR006153), NAD(P)-binding (InterPro:IPR016040), Regulator of K+ conductance, N-terminal (InterPro:IPR003148); BEST Arabidopsis thaliana protein match is: KEA1 (K EFFLUX ANTIPORTER 1); potassium ion transmembrane transporter/ potassium:hydrogen antiporter (TAIR:AT1G01790.1); Has 7418 Blast hits to 7410 proteins in 1257 species: Archae - 326; Bacteria - 5565; Metazoa - 83; Fungi - 54; Plants - 168; Viruses - 4; Other Eukaryotes - 1218 (source: NCBI BLink).  protein_id AT4G00630.1p  transcript_id AT4G00630.1  protein_id AT4G00630.1p  transcript_id AT4G00630.1  
At4g00650	chr4:000269026	0.0	W/269026-269976,270358-270363	AT4G00650.1  CDS  gene_syn F6N23.25, F6N23_25, FLA, FLOWERING LOCUS A, FRI, FRIGIDA  gene FRI  function Encodes a major determinant of natural variation in Arabidopsis flowering time. Dominant alleles of FRI confer a vernalization requirement causing plants to overwinter vegetatively. Many early flowering accessions carry loss-of-function fri alleles .Twenty distinct haplotypes that contain non-functional FRI alleles have been identified and the distribution analyzed in over 190 accessions. The common lab strains- Col and Ler each carry loss of function mutations in FRI.  go_component nucleus|GO:0005634|17138694|IDA  go_process negative regulation of flower development|GO:0009910|8455554|IMP  go_process vernalization response|GO:0010048|15908596|IGI  go_process regulation of vegetative phase change|GO:0010321|10995392|IMP  go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|10995392|IMP  go_function protein homodimerization activity|GO:0042803|17138694|IPI  go_function protein heterodimerization activity|GO:0046982|17138694|IPI  product FRI (FRIGIDA); protein heterodimerization/ protein homodimerization  note FRIGIDA (FRI); FUNCTIONS IN: protein heterodimerization activity, protein homodimerization activity; INVOLVED IN: regulation of vegetative phase change, negative regulation of flower development, vernalization response, regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: nucleus; EXPRESSED IN: shoot apex, embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48385.1); Has 698 Blast hits to 698 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 698; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G00650.1p  transcript_id AT4G00650.1  protein_id AT4G00650.1p  transcript_id AT4G00650.1  
At4g00651	chr4:000271830	0.0	C/271830-271879,271487-271724	AT4G00651.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: FSD2 (FE SUPEROXIDE DISMUTASE 2); superoxide dismutase (TAIR:AT5G51100.1).  protein_id AT4G00651.1p  transcript_id AT4G00651.1  protein_id AT4G00651.1p  transcript_id AT4G00651.1  
At4g00660	chr4:000274638	0.0	W/274638-274945,275109-275169,275406-275640,275956-276194,276330-276581,276655-276835,277033-277121,277209-277282,277360-277438	AT4G00660.1  CDS  gene_syn F6N23.6, F6N23_6  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD/DEAH box helicase, putative  note DEAD/DEAH box helicase, putative; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (RH12) (TAIR:AT3G61240.2); Has 29911 Blast hits to 28926 proteins in 1767 species: Archae - 415; Bacteria - 11594; Metazoa - 5504; Fungi - 3568; Plants - 1459; Viruses - 51; Other Eukaryotes - 7320 (source: NCBI BLink).  protein_id AT4G00660.1p  transcript_id AT4G00660.1  protein_id AT4G00660.1p  transcript_id AT4G00660.1  
At4g00660	chr4:000274638	0.0	W/274638-274945,275109-275169,275406-275640,275956-276194,276330-276581,276655-276835,277033-277121,277209-277282,277360-277438	AT4G00660.2  CDS  gene_syn F6N23.6, F6N23_6  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD/DEAH box helicase, putative  note DEAD/DEAH box helicase, putative; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (RH12) (TAIR:AT3G61240.2); Has 29911 Blast hits to 28926 proteins in 1767 species: Archae - 415; Bacteria - 11594; Metazoa - 5504; Fungi - 3568; Plants - 1459; Viruses - 51; Other Eukaryotes - 7320 (source: NCBI BLink).  protein_id AT4G00660.2p  transcript_id AT4G00660.2  protein_id AT4G00660.2p  transcript_id AT4G00660.2  
At4g00670	chr4:000279143	0.0	C/279143-279170,278995-279058,278846-278927,278434-278631	AT4G00670.1  CDS  gene_syn F6N23.13, F6N23_13  go_function DNA binding|GO:0003677||ISS  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; EXPRESSED IN: vascular tissue; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal region (InterPro:IPR005516); BEST Arabidopsis thaliana protein match is: remorin family protein (TAIR:AT5G23750.2); Has 220 Blast hits to 220 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 7; Plants - 196; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT4G00670.1p  transcript_id AT4G00670.1  protein_id AT4G00670.1p  transcript_id AT4G00670.1  
At4g00680	chr4:000280606	0.0	C/280606-280608,280011-280276,279780-279933	AT4G00680.1  CDS  gene_syn ACTIN DEPOLYMERIZING FACTOR 8, ADF8, F6N23.12, F6N23_12  gene ADF8  go_component intracellular|GO:0005622||IEA  go_function actin binding|GO:0003779||IEA  go_component intracellular|GO:0005622||ISS  go_process biological_process|GO:0008150||ND  product ADF8 (ACTIN DEPOLYMERIZING FACTOR 8); actin binding  note ACTIN DEPOLYMERIZING FACTOR 8 (ADF8); FUNCTIONS IN: actin binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Actin-binding, cofilin/tropomyosin type (InterPro:IPR002108); BEST Arabidopsis thaliana protein match is: ADF11 (ACTIN DEPOLYMERIZING FACTOR 11); actin binding (TAIR:AT1G01750.1); Has 1183 Blast hits to 1175 proteins in 208 species: Archae - 0; Bacteria - 3; Metazoa - 625; Fungi - 107; Plants - 307; Viruses - 0; Other Eukaryotes - 141 (source: NCBI BLink).  protein_id AT4G00680.1p  transcript_id AT4G00680.1  protein_id AT4G00680.1p  transcript_id AT4G00680.1  
At4g00690	chr4:000281645	0.0	W/281645-281669,281762-281798,281885-281978,282058-282156,282240-282329,282397-282519,282594-282697,282765-282858,283067-283129	AT4G00690.1  CDS  gene_syn F6N23.7, F6N23_7, UB-LIKE PROTEASE 1B, ULP1B  gene ULP1B  go_component chloroplast|GO:0009507|15028209|IDA  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product ULP1B (UB-LIKE PROTEASE 1B); cysteine-type peptidase  note UB-LIKE PROTEASE 1B (ULP1B); FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: ESD4 (EARLY IN SHORT DAYS 4); SUMO-specific protease/ cysteine-type peptidase (TAIR:AT4G15880.1); Has 999 Blast hits to 998 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 531; Fungi - 169; Plants - 178; Viruses - 5; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT4G00690.1p  transcript_id AT4G00690.1  protein_id AT4G00690.1p  transcript_id AT4G00690.1  
At4g00695	chr4:000284129	0.0	W/284129-284209,284281-284386,284493-284682,284777-284786	AT4G00695.1  CDS  go_component spindle pole|GO:0000922||IEA  go_component microtubule organizing center|GO:0005815||IEA  go_process microtubule cytoskeleton organization|GO:0000226||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: spindle pole, microtubule organizing center; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80245.3); Has 17 Blast hits to 17 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G00695.1p  transcript_id AT4G00695.1  protein_id AT4G00695.1p  transcript_id AT4G00695.1  
At4g00695	chr4:000284129	0.0	W/284129-284209,284281-284386,284493-284682,284777-284786	AT4G00695.2  CDS  go_component spindle pole|GO:0000922||IEA  go_component microtubule organizing center|GO:0005815||IEA  go_process microtubule cytoskeleton organization|GO:0000226||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: spindle pole, microtubule organizing center; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80245.3); Has 17 Blast hits to 17 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G00695.2p  transcript_id AT4G00695.2  protein_id AT4G00695.2p  transcript_id AT4G00695.2  
At4g00700	chr4:000286260	0.0	W/286260-288988,289078-289369	AT4G00700.1  CDS  gene_syn F6N23.8, F6N23_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal, plant (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT4G11610.1); Has 3245 Blast hits to 2276 proteins in 174 species: Archae - 0; Bacteria - 0; Metazoa - 1991; Fungi - 105; Plants - 877; Viruses - 0; Other Eukaryotes - 272 (source: NCBI BLink).  protein_id AT4G00700.1p  transcript_id AT4G00700.1  protein_id AT4G00700.1p  transcript_id AT4G00700.1  
At4g00710	chr4:000290807	0.0	W/290807-290885,290966-291186,291270-291405,291504-291637,291743-291848,291926-292011,292108-292296,292387-292539,292651-292764,292845-293096	AT4G00710.1  CDS  gene_syn BR-SIGNALING KINASE 3, BSK3, F6N23.9, F6N23_9  gene BSK3  function Encodes BR-signaling kinase 3 (BSK3), one of the three homologous BR-signaling kinases (BSK1, AT4G35230; BSK2, AT5G46570; BSK3, AT4G00710). Mediates signal transduction from receptor kinase BRI1 by functioning as the substrate of BRI1. Plasma membrane localized.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function binding|GO:0005488||IEA  go_function ATP binding|GO:0005524||IEA  go_process brassinosteroid mediated signaling|GO:0009742|18653891|IMP  go_function kinase activity|GO:0016301||ISS  product BSK3 (BR-SIGNALING KINASE 3); ATP binding / binding / kinase/ protein kinase/ protein tyrosine kinase  note BR-SIGNALING KINASE 3 (BSK3); FUNCTIONS IN: protein tyrosine kinase activity, binding, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: brassinosteroid mediated signaling, N-terminal protein myristoylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G01740.1); Has 20427 Blast hits to 20069 proteins in 827 species: Archae - 5; Bacteria - 1072; Metazoa - 5970; Fungi - 133; Plants - 12074; Viruses - 89; Other Eukaryotes - 1084 (source: NCBI BLink).  protein_id AT4G00710.1p  transcript_id AT4G00710.1  protein_id AT4G00710.1p  transcript_id AT4G00710.1  
At4g00720	chr4:000296940	0.0	C/296940-297002,296416-296661,296244-296336,296040-296099,295679-295951,295476-295550,295333-295389,295112-295252,294937-294987,294761-294856,294598-294681,294390-294492,294116-294192	AT4G00720.1  CDS  gene_syn ATSK32, F6N23.11, F6N23_11, SHAGGY-LIKE PROTEIN KINASE 32  gene ATSK32  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_function kinase activity|GO:0016301||ISS  product ATSK32 (SHAGGY-LIKE PROTEIN KINASE 32); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note SHAGGY-LIKE PROTEIN KINASE 32 (ATSK32); FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: SK13 (SHAGGY-LIKE KINASE 13); ATP binding / protein kinase/ protein serine/threonine kinase (TAIR:AT5G14640.1); Has 74054 Blast hits to 73135 proteins in 2264 species: Archae - 36; Bacteria - 5684; Metazoa - 31554; Fungi - 7580; Plants - 14010; Viruses - 325; Other Eukaryotes - 14865 (source: NCBI BLink).  protein_id AT4G00720.1p  transcript_id AT4G00720.1  protein_id AT4G00720.1p  transcript_id AT4G00720.1  
At4g00730	chr4:000303897	0.0	C/303897-304103,303581-303825,303376-303493,302681-303301,302497-302598,302204-302410,301071-301283	AT4G00730.2  CDS  gene_syn AHDP, ANL2, ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, F6N23.10, F6N23_10, HOMEODOMAIN PROTEIN AHDP  gene ANL2  function Encodes a homeodomain protein of the HD-GLABRA2 group. Involved in the accumulation of anthocyanin and in root development  go_component nucleus|GO:0005634||IEA  go_process anthocyanin accumulation in tissues in response to UV light|GO:0043481|10402424|IMP  go_process root development|GO:0048364|10402424|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription regulator activity|GO:0030528|10402424|ISS  product ANL2 (ANTHOCYANINLESS 2); transcription factor/ transcription regulator  note ANTHOCYANINLESS 2 (ANL2); FUNCTIONS IN: transcription factor activity, transcription regulator activity; INVOLVED IN: root development, anthocyanin accumulation in tissues in response to UV light; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: HDG1 (HOMEODOMAIN GLABROUS 1); DNA binding / transcription factor (TAIR:AT3G61150.1); Has 10552 Blast hits to 10523 proteins in 509 species: Archae - 0; Bacteria - 0; Metazoa - 8692; Fungi - 154; Plants - 1529; Viruses - 1; Other Eukaryotes - 176 (source: NCBI BLink).  protein_id AT4G00730.2p  transcript_id AT4G00730.2  protein_id AT4G00730.2p  transcript_id AT4G00730.2  
At4g00730	chr4:000303897	0.0	C/303897-304103,303581-303825,303376-303493,302681-303301,302497-302598,302204-302410,301109-301283,300656-301017,299741-300112	AT4G00730.1  CDS  gene_syn AHDP, ANL2, ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, F6N23.10, F6N23_10, HOMEODOMAIN PROTEIN AHDP  gene ANL2  function Encodes a homeodomain protein of the HD-GLABRA2 group. Involved in the accumulation of anthocyanin and in root development  go_component nucleus|GO:0005634||IEA  go_process anthocyanin accumulation in tissues in response to UV light|GO:0043481|10402424|IMP  go_process root development|GO:0048364|10402424|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription regulator activity|GO:0030528|10402424|ISS  product ANL2 (ANTHOCYANINLESS 2); transcription factor/ transcription regulator  note ANTHOCYANINLESS 2 (ANL2); FUNCTIONS IN: transcription factor activity, transcription regulator activity; INVOLVED IN: root development, anthocyanin accumulation in tissues in response to UV light; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: HDG1 (HOMEODOMAIN GLABROUS 1); DNA binding / transcription factor (TAIR:AT3G61150.1); Has 10532 Blast hits to 10503 proteins in 509 species: Archae - 0; Bacteria - 0; Metazoa - 8663; Fungi - 152; Plants - 1540; Viruses - 1; Other Eukaryotes - 176 (source: NCBI BLink).  protein_id AT4G00730.1p  transcript_id AT4G00730.1  protein_id AT4G00730.1p  transcript_id AT4G00730.1  
At4g00740	chr4:000309867	0.0	C/309867-310298,309501-309704,309214-309424,308859-309120,308375-308749,308128-308223,307815-308037	AT4G00740.1  CDS  gene_syn F15P23.2, F15P23_2  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  product dehydration-responsive protein-related  note dehydration-responsive protein-related; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive family protein (TAIR:AT4G10440.1); Has 538 Blast hits to 531 proteins in 57 species: Archae - 2; Bacteria - 72; Metazoa - 0; Fungi - 0; Plants - 461; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G00740.1p  transcript_id AT4G00740.1  protein_id AT4G00740.1p  transcript_id AT4G00740.1  
At4g00750	chr4:000314405	0.0	W/314405-315085,316016-316226,316318-316615,316711-317109,317195-317507	AT4G00750.1  CDS  gene_syn F15P23.1, F15P23_1  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  product dehydration-responsive family protein  note dehydration-responsive family protein; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive family protein (TAIR:AT2G45750.1); Has 521 Blast hits to 511 proteins in 39 species: Archae - 0; Bacteria - 30; Metazoa - 0; Fungi - 0; Plants - 487; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G00750.1p  transcript_id AT4G00750.1  protein_id AT4G00750.1p  transcript_id AT4G00750.1  
At4g00752	chr4:000320710	0.0	C/320710-320793,320378-320439,319751-320255,319582-319665,319397-319507,319003-319119,318707-318856,318178-318306,318028-318084,317771-317881	AT4G00752.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product UBX domain-containing protein  note UBX domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012), Ubiquitin interacting motif (InterPro:IPR003903), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: SAY1 (TAIR:AT4G11740.1); Has 333 Blast hits to 316 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 181; Fungi - 9; Plants - 118; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT4G00752.1p  transcript_id AT4G00752.1  protein_id AT4G00752.1p  transcript_id AT4G00752.1  
At4g00753	chr4:000322364	0.0	W/322364-323033	AT4G00753.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G37890; seven in absentia (SINA) protein, putative  
At4g00755	chr4:000325294	0.0	W/325294-325408,325501-325920,326009-326190,326279-326397,326490-326787	AT4G00755.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); Has 52 Blast hits to 52 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 12; Plants - 33; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT4G00755.1p  transcript_id AT4G00755.1  protein_id AT4G00755.1p  transcript_id AT4G00755.1  
At4g00755	chr4:000325294	0.0	W/325294-325408,325501-325920,326009-326190,326279-326397,326490-326787	AT4G00755.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); Has 52 Blast hits to 52 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 12; Plants - 33; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT4G00755.2p  transcript_id AT4G00755.2  protein_id AT4G00755.2p  transcript_id AT4G00755.2  
At4g00760	chr4:000328931	0.0	C/328931-329048,328656-328808,328226-328489,327945-328106,327725-327868,327236-327498	AT4G00760.1  CDS  gene_syn APRR8, A_TM018A10.20, A_TM018A10_20, PRR8, PSEUDO-RESPONSE REGULATOR 8, T18A10.1, T18A10_1  gene APRR8  function Encodes a response-regulator like protein.  go_process two-component signal transduction system (phosphorelay)|GO:0000160||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component cellular_component|GO:0005575||ND  go_function two-component response regulator activity|GO:0000156||ISS  go_function transcription regulator activity|GO:0030528|12068096|TAS  product APRR8 (PSEUDO-RESPONSE REGULATOR 8); transcription regulator/ two-component response regulator  note PSEUDO-RESPONSE REGULATOR 8 (APRR8); FUNCTIONS IN: transcription regulator activity, two-component response regulator activity; INVOLVED IN: regulation of transcription, DNA-dependent, two-component signal transduction system (phosphorelay); LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver region (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: ARR10 (ARABIDOPSIS RESPONSE REGULATOR 10); transcription factor/ two-component response regulator (TAIR:AT4G31920.1); Has 952 Blast hits to 921 proteins in 217 species: Archae - 0; Bacteria - 283; Metazoa - 75; Fungi - 12; Plants - 394; Viruses - 1; Other Eukaryotes - 187 (source: NCBI BLink).  protein_id AT4G00760.1p  transcript_id AT4G00760.1  protein_id AT4G00760.1p  transcript_id AT4G00760.1  
At4g00770	chr4:000331195	0.0	W/331195-331776,332209-332326,332428-333050	AT4G00770.1  CDS  gene_syn A_TM018A10.11, A_TM018A10_11, T18A10.2, T18A10_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, flower, pedicel, root; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 119 Blast hits to 105 proteins in 30 species: Archae - 0; Bacteria - 2; Metazoa - 22; Fungi - 7; Plants - 36; Viruses - 4; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT4G00770.1p  transcript_id AT4G00770.1  protein_id AT4G00770.1p  transcript_id AT4G00770.1  
At4g00780	chr4:000334779	0.0	W/334779-334803,334884-335013,335119-335264,335349-335631,335709-335875,335972-336120	AT4G00780.1  CDS  gene_syn A_TM018A10.12, A_TM018A10_12, T18A10.3, T18A10_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01390.1); Has 394 Blast hits to 352 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 375; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT4G00780.1p  transcript_id AT4G00780.1  protein_id AT4G00780.1p  transcript_id AT4G00780.1  
At4g00800	chr4:000344184	0.0	C/344184-345581,343756-344064,343387-343626,343195-343309,342986-343143,342278-342911,341628-341692,341449-341550,341195-341337,340868-340923,340105-340745,339811-340001,339420-339726,338648-338941,338465-338574,337948-338284,337424-337846,337114-337347	AT4G00800.1  CDS  gene_syn A_TM018A10.23, A_TM018A10_23, T18A10.7, T18A10_7  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding / protein binding / zinc ion binding  note binding / protein binding / zinc ion binding; FUNCTIONS IN: protein binding, binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Zinc finger, RING-type (InterPro:IPR001841), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), Armadillo-type fold (InterPro:IPR016024); Has 1739 Blast hits to 788 proteins in 176 species: Archae - 4; Bacteria - 317; Metazoa - 527; Fungi - 259; Plants - 42; Viruses - 1; Other Eukaryotes - 589 (source: NCBI BLink).  protein_id AT4G00800.1p  transcript_id AT4G00800.1  protein_id AT4G00800.1p  transcript_id AT4G00800.1  
At4g00810	chr4:000346886	0.0	C/346886-346957,346325-346540,346179-346232	AT4G00810.1  CDS  gene_syn A_TM018A10.9, A_TM018A10_9, T18A10.8, T18A10_8  go_process translational elongation|GO:0006414||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic ribosome|GO:0022626|17934214|IDA  go_process translational elongation|GO:0006414||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S acidic ribosomal protein P1 (RPP1B)  note 60S acidic ribosomal protein P1 (RPP1B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P1 (RPP1C) (TAIR:AT5G47700.2); Has 1673 Blast hits to 1672 proteins in 297 species: Archae - 60; Bacteria - 0; Metazoa - 672; Fungi - 360; Plants - 316; Viruses - 0; Other Eukaryotes - 265 (source: NCBI BLink).  protein_id AT4G00810.1p  transcript_id AT4G00810.1  protein_id AT4G00810.1p  transcript_id AT4G00810.1  
At4g00810	chr4:000346886	0.0	C/346886-346957,346325-346540,346179-346232	AT4G00810.2  CDS  gene_syn A_TM018A10.9, A_TM018A10_9, T18A10.8, T18A10_8  go_process translational elongation|GO:0006414||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic ribosome|GO:0022626|17934214|IDA  go_process translational elongation|GO:0006414||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S acidic ribosomal protein P1 (RPP1B)  note 60S acidic ribosomal protein P1 (RPP1B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P1 (RPP1C) (TAIR:AT5G47700.2); Has 1673 Blast hits to 1672 proteins in 297 species: Archae - 60; Bacteria - 0; Metazoa - 672; Fungi - 360; Plants - 316; Viruses - 0; Other Eukaryotes - 265 (source: NCBI BLink).  protein_id AT4G00810.2p  transcript_id AT4G00810.2  protein_id AT4G00810.2p  transcript_id AT4G00810.2  
At4g00820	chr4:000349300	0.0	W/349300-349425,349548-349859,349938-350183,350308-350451,350531-351307	AT4G00820.1  CDS  gene_syn A_TM018A10.13, A_TM018A10_13, IQ-domain 17, T18A10.11, T18A10_11, iqd17  gene iqd17  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product iqd17 (IQ-domain 17); calmodulin binding  note IQ-domain 17 (iqd17); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQD18 (IQ-domain 18) (TAIR:AT1G01110.2); Has 886 Blast hits to 700 proteins in 90 species: Archae - 0; Bacteria - 2; Metazoa - 153; Fungi - 46; Plants - 458; Viruses - 43; Other Eukaryotes - 184 (source: NCBI BLink).  protein_id AT4G00820.1p  transcript_id AT4G00820.1  protein_id AT4G00820.1p  transcript_id AT4G00820.1  
At4g00830	chr4:000352782	0.0	W/352782-353213,353301-353417,353518-353658,353738-353917,354016-354217,354356-354537,354635-354720,354818-354965	AT4G00830.1  CDS  gene_syn A_TM018A10.14, A_TM018A10_14, T18A10.13, T18A10_13  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT3G52660.2); Has 43150 Blast hits to 23583 proteins in 806 species: Archae - 55; Bacteria - 2020; Metazoa - 23906; Fungi - 4438; Plants - 4282; Viruses - 424; Other Eukaryotes - 8025 (source: NCBI BLink).  protein_id AT4G00830.1p  transcript_id AT4G00830.1  protein_id AT4G00830.1p  transcript_id AT4G00830.1  
At4g00830	chr4:000352782	0.0	W/352782-353213,353301-353417,353518-353658,353738-353917,354016-354217,354356-354537,354635-354720,354818-354965	AT4G00830.2  CDS  gene_syn A_TM018A10.14, A_TM018A10_14, T18A10.13, T18A10_13  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT3G52660.2); Has 43150 Blast hits to 23583 proteins in 806 species: Archae - 55; Bacteria - 2020; Metazoa - 23906; Fungi - 4438; Plants - 4282; Viruses - 424; Other Eukaryotes - 8025 (source: NCBI BLink).  protein_id AT4G00830.2p  transcript_id AT4G00830.2  protein_id AT4G00830.2p  transcript_id AT4G00830.2  
At4g00840	chr4:000356917	0.0	C/356917-357105,356452-356650,356265-356356,356031-356157,355831-355916,355678-355743,355483-355599	AT4G00840.1  CDS  gene_syn A_TM018A10.8, A_TM018A10_8, T18A10.14, T18A10_14  go_component endomembrane system|GO:0012505||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: zinc finger (DHHC type) family protein (TAIR:AT3G60800.1); Has 3992 Blast hits to 3990 proteins in 184 species: Archae - 0; Bacteria - 0; Metazoa - 1955; Fungi - 533; Plants - 396; Viruses - 0; Other Eukaryotes - 1108 (source: NCBI BLink).  protein_id AT4G00840.1p  transcript_id AT4G00840.1  protein_id AT4G00840.1p  transcript_id AT4G00840.1  
At4g00850	chr4:000357675	0.0	W/357675-357758,358091-358167,358269-358377,358453-358726,358801-358928	AT4G00850.1  CDS  gene_syn A_TM018A10.22, A_TM018A10_22, GIF3, GRF1-INTERACTING FACTOR 3, T18A10.15, T18A10_15  gene GIF3  function Arabidopsis thaliana GRF1-interacting factor 3 (GIF3) mRNA  go_component nucleus|GO:0005634|15326298|ISS  go_process biological_process|GO:0008150||ND  go_function transcription coactivator activity|GO:0003713|12974814|ISS  go_function protein binding|GO:0005515|15326298|IPI  product GIF3 (GRF1-INTERACTING FACTOR 3); protein binding / transcription coactivator  note GRF1-INTERACTING FACTOR 3 (GIF3); FUNCTIONS IN: transcription coactivator activity, protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SSXT (InterPro:IPR007726); BEST Arabidopsis thaliana protein match is: SSXT protein-related / transcription co-activator-related (TAIR:AT1G01160.1); Has 325 Blast hits to 325 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 228; Fungi - 21; Plants - 53; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT4G00850.1p  transcript_id AT4G00850.1  protein_id AT4G00850.1p  transcript_id AT4G00850.1  
At4g00860	chr4:000359772	0.0	C/359772-359868,359548-359693	AT4G00860.1  CDS  gene_syn AT0ZI1, ATOZI1, Arabidopsis thaliana ozone-induced protein 1, T18A10.16, T18A10_16  gene ATOZI1  function putative pathogenesis-related protein whose transcript level is induced in response to ozone and pathogenic Pseudomonas strains.  go_component peroxisome|GO:0005777|17951448|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process response to reactive oxygen species|GO:0000302|7579170|IEP  go_process response to bacterium|GO:0009617|7579170|IEP  go_process response to ozone|GO:0010193|7579170|IEP  go_function molecular_function|GO:0003674||ND  product ATOZI1  note ATOZI1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to reactive oxygen species, response to bacterium, response to ozone; LOCATED IN: mitochondrion, peroxisome, plastid, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1138 (InterPro:IPR009515); BEST Arabidopsis thaliana protein match is: ozone-responsive stress-related protein, putative (TAIR:AT1G01170.2); Has 63 Blast hits to 63 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G00860.1p  transcript_id AT4G00860.1  protein_id AT4G00860.1p  transcript_id AT4G00860.1  
At4g00870	chr4:000363379	0.0	C/363379-363639,362230-363240	AT4G00870.1  CDS  gene_syn A_TM018A10.7, A_TM018A10_7, T18A10.17, T18A10_17  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT4G16430.1); Has 1713 Blast hits to 1539 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 30; Plants - 1632; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT4G00870.1p  transcript_id AT4G00870.1  protein_id AT4G00870.1p  transcript_id AT4G00870.1  
At4g00872	chr4:000364512	0.0	C/364512-364736,364147-364416	AT4G00872.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  product enzyme inhibitor/ pectinesterase  note enzyme inhibitor/ pectinesterase; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: pectinesterase inhibitor domain-containing protein (TAIR:AT1G56100.2).  protein_id AT4G00872.1p  transcript_id AT4G00872.1  protein_id AT4G00872.1p  transcript_id AT4G00872.1  
At4g00880	chr4:000366692	0.0	C/366692-367060	AT4G00880.1  CDS  gene_syn A_TM018A10.6, A_TM018A10_6, T18A10.18, T18A10_18  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT2G46690.1); Has 736 Blast hits to 726 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 735; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G00880.1p  transcript_id AT4G00880.1  protein_id AT4G00880.1p  transcript_id AT4G00880.1  
At4g00885	chr4:000369856	0.0	C/369856-369991	AT4G00885.1  miRNA  gene_syn MICRORNA 165, MICRORNA 165B, MIR165, MIR165B  gene MIR165B  function Encodes a microRNA that targets several HD-ZIPIII family members including PHV, PHB, REV, ATHB-8, and ATHB-15. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCGGACCAGGCUUCAUCCCC  go_component cellular_component|GO:0005575||ND  go_process gene silencing by miRNA|GO:0035195|15200956|TAS  go_function molecular_function|GO:0003674||ND  product MIR165B (MICRORNA 165B); miRNA  transcript_id AT4G00885.1  
At4g00890	chr4:000374055	0.0	C/374055-375350	AT4G00890.1  CDS  gene_syn ATXYN5, A_TM018A10.5, A_TM018A10_5, T18A10.19, T18A10_19  function Encodes a putative glycosyl hydrolase family 10 protein (xylanase).  go_function endo-1,4-beta-xylanase activity|GO:0031176|12154138|ISS  product proline-rich family protein  note proline-rich family protein; FUNCTIONS IN: endo-1,4-beta-xylanase activity; Has 64100 Blast hits to 36418 proteins in 1228 species: Archae - 88; Bacteria - 5615; Metazoa - 29876; Fungi - 12567; Plants - 5006; Viruses - 1771; Other Eukaryotes - 9177 (source: NCBI BLink).  protein_id AT4G00890.1p  transcript_id AT4G00890.1  protein_id AT4G00890.1p  transcript_id AT4G00890.1  
At4g00891	chr4:000377481	0.0	C/377481-377908	AT4G00891.1  pseudogenic_transcript  pseudo  function pseudogene of APUM24 (RNA binding)  
At4g00893	chr4:000381302	0.0	C/381302-381396,379971-381042	AT4G00893.1  CDS  go_component chloroplast|GO:0009507||IEA  product unknown protein  note LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12370.1); Has 133 Blast hits to 128 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G00893.1p  transcript_id AT4G00893.1  protein_id AT4G00893.1p  transcript_id AT4G00893.1  
At4g00895	chr4:000381823	0.0	W/381823-382398	AT4G00895.1  CDS  go_component chloroplast|GO:0009507||IEA  go_component proton-transporting ATP synthase complex, catalytic core F(1)|GO:0045261||IEA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_function hydrogen ion transporting ATP synthase activity, rotational mechanism|GO:0046933||IEA  go_function proton-transporting ATPase activity, rotational mechanism|GO:0046961||IEA  product ATP synthase delta chain-related  note ATP synthase delta chain-related; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: proton-transporting ATP synthase complex, catalytic core F(1), chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, OSCP/delta subunit (InterPro:IPR000711); Has 40 Blast hits to 40 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 11; Plants - 20; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G00895.1p  transcript_id AT4G00895.1  protein_id AT4G00895.1p  transcript_id AT4G00895.1  
At4g00900	chr4:000384762	0.0	C/384762-386226,384541-384662,383792-384454,383590-383699,382690-383494	AT4G00900.1  CDS  gene_syn ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 2, ATECA2, A_TM018A10.4, A_TM018A10_4, ECA2, ER-TYPE CA2+-ATPASE 2, T18A10.20, T18A10_20  gene ECA2  function Type IIA (SERCA-type) Ca2+ ATPase, catalyzes the efflux of calcium from the cytoplasm.  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process calcium ion transport|GO:0006816|10433975|ISS  go_function calcium-transporting ATPase activity|GO:0005388|10433975|ISS  go_function calcium-transporting ATPase activity|GO:0005388|12805592|ISS  go_function calcium-transporting ATPase activity|GO:0005388||ISS  product ECA2 (ER-TYPE CA2+-ATPASE 2); calcium-transporting ATPase  note ER-TYPE CA2+-ATPASE 2 (ECA2); FUNCTIONS IN: calcium-transporting ATPase activity; INVOLVED IN: calcium ion transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, calcium-transporting (InterPro:IPR005782), ATPase, P-type cation exchange, alpha subunit (InterPro:IPR006069), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068); BEST Arabidopsis thaliana protein match is: calcium-transporting ATPase (TAIR:AT1G07670.1); Has 29756 Blast hits to 20010 proteins in 1905 species: Archae - 677; Bacteria - 18650; Metazoa - 3664; Fungi - 1966; Plants - 1384; Viruses - 3; Other Eukaryotes - 3412 (source: NCBI BLink).  protein_id AT4G00900.1p  transcript_id AT4G00900.1  protein_id AT4G00900.1p  transcript_id AT4G00900.1  
At4g00905	chr4:000387865	0.0	W/387865-387958,388363-389060	AT4G00905.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NC (InterPro:IPR007053); BEST Arabidopsis thaliana protein match is: NC domain-containing protein-related (TAIR:AT1G01225.1); Has 84 Blast hits to 83 proteins in 19 species: Archae - 0; Bacteria - 10; Metazoa - 6; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G00905.1p  transcript_id AT4G00905.1  protein_id AT4G00905.1p  transcript_id AT4G00905.1  
At4g00910	chr4:000390951	0.0	C/390951-391287,390718-390855,390342-390614,390138-390262,389897-390076,389370-389810	AT4G00910.1  CDS  gene_syn A_TM018A10.3, A_TM018A10_3, T18A10.21, T18A10_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sepal, pedicel, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0005 (InterPro:IPR006214); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G08440.1); Has 593 Blast hits to 593 proteins in 209 species: Archae - 0; Bacteria - 351; Metazoa - 0; Fungi - 8; Plants - 212; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT4G00910.1p  transcript_id AT4G00910.1  protein_id AT4G00910.1p  transcript_id AT4G00910.1  
At4g00920	chr4:000393767	0.0	W/393767-393884,393965-394032,394113-394422,394724-394819,394933-395076,395174-395382	AT4G00920.1  CDS  gene_syn A_TM018A10.16, A_TM018A10_16, T18A10.22, T18A10_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product COP1-interacting protein-related  note COP1-interacting protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; BEST Arabidopsis thaliana protein match is: holo-[acyl-carrier-protein] synthase/ magnesium ion binding (TAIR:AT2G02770.1); Has 237 Blast hits to 214 proteins in 63 species: Archae - 0; Bacteria - 8; Metazoa - 66; Fungi - 20; Plants - 49; Viruses - 1; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT4G00920.1p  transcript_id AT4G00920.1  protein_id AT4G00920.1p  transcript_id AT4G00920.1  
At4g00930	chr4:000396558	0.0	W/396558-396675,396764-396831,396908-397322,397436-397645,397724-398155,398230-398538,398616-398963,399066-400394,400475-400502,400590-400734	AT4G00930.1  CDS  gene_syn A_TM018A10.17, A_TM018A10_17, CIP4.1, T18A10.23, T18A10_23  gene CIP4.1  function Encodes COP1-interacting protein CIP4.1.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product CIP4.1  note CIP4.1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: CIP4 (COP1-interacting protein 4); transcription cofactor (TAIR:AT5G37190.1); Has 18320 Blast hits to 12387 proteins in 764 species: Archae - 42; Bacteria - 2387; Metazoa - 6676; Fungi - 1731; Plants - 574; Viruses - 114; Other Eukaryotes - 6796 (source: NCBI BLink).  protein_id AT4G00930.1p  transcript_id AT4G00930.1  protein_id AT4G00930.1p  transcript_id AT4G00930.1  
At4g00940	chr4:000403320	0.0	C/403320-404204	AT4G00940.1  CDS  gene_syn A_TM018A10.25, A_TM018A10_25, T18A10.24, T18A10_24  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634|16581911|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product Dof-type zinc finger domain-containing protein  note Dof-type zinc finger domain-containing protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: DAG1 (dof affecting germination 1); DNA binding / transcription factor (TAIR:AT3G61850.3); Has 644 Blast hits to 636 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 613; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT4G00940.1p  transcript_id AT4G00940.1  protein_id AT4G00940.1p  transcript_id AT4G00940.1  
At4g00950	chr4:000406275	0.0	C/406275-407087,405984-406046	AT4G00950.1  CDS  gene_syn A_TM018A10.2, A_TM018A10_2, MEE47, T18A10.4, T18A10_4, maternal effect embryo arrest 47  gene MEE47  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MEE47 (maternal effect embryo arrest 47); transcription factor  note maternal effect embryo arrest 47 (MEE47); FUNCTIONS IN: transcription factor activity; INVOLVED IN: embryonic development ending in seed dormancy, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; Has 80 Blast hits to 68 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 30; Fungi - 7; Plants - 39; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G00950.1p  transcript_id AT4G00950.1  protein_id AT4G00950.1p  transcript_id AT4G00950.1  
At4g00955	chr4:000412218	0.0	W/412218-412976	AT4G00955.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: EGF (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G23450.2); Has 62 Blast hits to 56 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G00955.1p  transcript_id AT4G00955.1  protein_id AT4G00955.1p  transcript_id AT4G00955.1  
At4g00960	chr4:000414361	0.0	W/414361-414442,414489-414622,414710-414909,415019-415252,415337-415487,415863-416180	AT4G00960.1  CDS  gene_syn A_TM018A10.19, A_TM018A10_19, T18A10.6, T18A10_6  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function ATP binding|GO:0005524||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: stem, leaf; EXPRESSED DURING: LP.10 ten leaves visible; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G00970.1); Has 83598 Blast hits to 82599 proteins in 2980 species: Archae - 38; Bacteria - 7164; Metazoa - 36777; Fungi - 6458; Plants - 18516; Viruses - 399; Other Eukaryotes - 14246 (source: NCBI BLink).  protein_id AT4G00960.1p  transcript_id AT4G00960.1  protein_id AT4G00960.1p  transcript_id AT4G00960.1  
At4g00970	chr4:000418437	0.0	W/418437-419259,419376-419498,419602-419735,420477-420687,420778-421021,421113-421263,421383-421694	AT4G00970.1  CDS  gene_syn A_TM018A10.18, A_TM018A10_18, T18A10.9, T18A10_9  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function protein kinase activity|GO:0004672||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G21410.1); Has 85932 Blast hits to 84886 proteins in 3199 species: Archae - 45; Bacteria - 7229; Metazoa - 37779; Fungi - 6763; Plants - 18977; Viruses - 382; Other Eukaryotes - 14757 (source: NCBI BLink).  protein_id AT4G00970.1p  transcript_id AT4G00970.1  protein_id AT4G00970.1p  transcript_id AT4G00970.1  
At4g00975	chr4:000421973	0.0	W/421973-423258	AT4G00975.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT4G00980  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G00975.1  
At4g00980	chr4:000424257	0.0	C/424257-424580,424049-424139,423844-423934,422732-423692	AT4G00980.1  CDS  gene_syn A_TM018A10.1, A_TM018A10_1, T18A10.10, T18A10_10  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc knuckle (CCHC-type) family protein  note zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: KELP; DNA binding / transcription coactivator/ transcription regulator (TAIR:AT4G10920.2); Has 539 Blast hits to 537 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 32; Fungi - 7; Plants - 500; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G00980.1p  transcript_id AT4G00980.1  protein_id AT4G00980.1p  transcript_id AT4G00980.1  
At4g00985	chr4:000424717	0.0	C/424717-424788	AT4G00985.1  tRNA  gene_syn 67037.TRNA-GLN-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gln (anticodon: CTG)  transcript_id AT4G00985.1  
At4g00990	chr4:000427035	0.0	W/427035-427229,427426-427562,427651-427750,427844-427973,428056-428119,428829-429528,429617-429946,430100-430373,430488-430714,430811-430883,430989-431074,431218-431337,431449-431535	AT4G00990.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function transcription factor activity|GO:0003700||ISS  product transcription factor jumonji (jmjC) domain-containing protein  note transcription factor jumonji (jmjC) domain-containing protein; FUNCTIONS IN: protein binding, transcription factor activity, zinc ion binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, RING-type (InterPro:IPR001841), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT1G62310.1); Has 700 Blast hits to 466 proteins in 80 species: Archae - 0; Bacteria - 8; Metazoa - 459; Fungi - 31; Plants - 147; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT4G00990.1p  transcript_id AT4G00990.1  protein_id AT4G00990.1p  transcript_id AT4G00990.1  
At4g01000	chr4:000433105	0.0	C/433105-433727,432499-432976,432186-432332	AT4G01000.1  CDS  gene_syn F3I3.20, F3I3_20  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product ubiquitin family protein  note ubiquitin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: splicing factor-related (TAIR:AT3G06455.1); Has 6590 Blast hits to 3359 proteins in 562 species: Archae - 0; Bacteria - 34; Metazoa - 2857; Fungi - 799; Plants - 1435; Viruses - 158; Other Eukaryotes - 1307 (source: NCBI BLink).  protein_id AT4G01000.1p  transcript_id AT4G01000.1  protein_id AT4G01000.1p  transcript_id AT4G01000.1  
At4g01010	chr4:000437214	0.0	C/437214-437242,436565-437087,435980-436491,435742-435853,435415-435651,434932-435326,434569-434851	AT4G01010.1  CDS  gene_syn ATCNGC13, CNGC13, CYCLIC NUCLEOTIDE-GATED CHANNEL 13, F3I3.1, F3I3_1  gene ATCNGC13  function member of Cyclic nucleotide gated channel family  go_component membrane|GO:0016020||IEA  go_process ion transport|GO:0006811||IEA  go_function ion channel activity|GO:0005216||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function cyclic nucleotide binding|GO:0030551||ISS  product ATCNGC13; calmodulin binding / cyclic nucleotide binding / ion channel  note ATCNGC13; FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport; LOCATED IN: membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding, conserved site (InterPro:IPR018488), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: ATCNGC10 (CYCLIC NUCLEOTIDE GATED CHANNEL 10); calmodulin binding / cyclic nucleotide binding / ion channel (TAIR:AT1G01340.1); Has 2637 Blast hits to 2514 proteins in 212 species: Archae - 0; Bacteria - 37; Metazoa - 1329; Fungi - 17; Plants - 662; Viruses - 0; Other Eukaryotes - 592 (source: NCBI BLink).  protein_id AT4G01010.1p  transcript_id AT4G01010.1  protein_id AT4G01010.1p  transcript_id AT4G01010.1  
At4g01020	chr4:000439086	0.0	W/439086-440045,440231-441595,441785-443555,443776-445043	AT4G01020.1  CDS  gene_syn F3I3.40, F3I3_40  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function nucleic acid binding|GO:0003676||ISS  go_function helicase activity|GO:0004386||ISS  go_function ATP binding|GO:0005524||ISS  product helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related  note helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related; FUNCTIONS IN: in 6 functions; LOCATED IN: intracellular, chloroplast; CONTAINS InterPro DOMAIN/s: Helicase-associated region (InterPro:IPR007502), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Region of unknown function DUF1605 (InterPro:IPR011709), Zinc finger, RING-type (InterPro:IPR001841), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), DEAD-like helicase, N-terminal (InterPro:IPR014001), Zinc finger, C2H2-type (InterPro:IPR007087), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (TAIR:AT5G10370.1); Has 9424 Blast hits to 8872 proteins in 1028 species: Archae - 2; Bacteria - 1905; Metazoa - 3038; Fungi - 1285; Plants - 707; Viruses - 667; Other Eukaryotes - 1820 (source: NCBI BLink).  protein_id AT4G01020.1p  transcript_id AT4G01020.1  protein_id AT4G01020.1p  transcript_id AT4G01020.1  
At4g01023	chr4:000445844	0.0	W/445844-446179,446265-446376,446458-446720	AT4G01023.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type/C3HC4-type RING finger) family protein (TAIR:AT5G06420.2); Has 1268 Blast hits to 1212 proteins in 359 species: Archae - 6; Bacteria - 16; Metazoa - 781; Fungi - 144; Plants - 72; Viruses - 7; Other Eukaryotes - 242 (source: NCBI BLink).  protein_id AT4G01023.1p  transcript_id AT4G01023.1  protein_id AT4G01023.1p  transcript_id AT4G01023.1  
At4g01026	chr4:000447180	0.0	W/447180-447329,447554-447769,447840-448109	AT4G01026.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G01360.1); Has 184 Blast hits to 184 proteins in 20 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 180; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G01026.1p  transcript_id AT4G01026.1  protein_id AT4G01026.1p  transcript_id AT4G01026.1  
At4g01030	chr4:000448336	0.0	C/448336-449838	AT4G01030.1  CDS  gene_syn F3I3.50, F3I3_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 17573 Blast hits to 5634 proteins in 194 species: Archae - 1; Bacteria - 18; Metazoa - 182; Fungi - 99; Plants - 16810; Viruses - 0; Other Eukaryotes - 463 (source: NCBI BLink).  protein_id AT4G01030.1p  transcript_id AT4G01030.1  protein_id AT4G01030.1p  transcript_id AT4G01030.1  
At4g01037	chr4:000451444	0.0	C/451444-453030	AT4G01037.1  CDS  go_component intracellular|GO:0005622||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  product ubiquitin thiolesterase  note ubiquitin thiolesterase; FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (InterPro:IPR001578); BEST Arabidopsis thaliana protein match is: emb1692 (embryo defective 1692); ubiquitin thiolesterase (TAIR:AT5G62990.1); Has 9498 Blast hits to 4549 proteins in 324 species: Archae - 12; Bacteria - 656; Metazoa - 4520; Fungi - 1016; Plants - 577; Viruses - 332; Other Eukaryotes - 2385 (source: NCBI BLink).  protein_id AT4G01037.1p  transcript_id AT4G01037.1  protein_id AT4G01037.1p  transcript_id AT4G01037.1  
At4g01040	chr4:000453383	0.0	W/453383-453640,453739-453809,453915-453995,454094-454178,454307-454404,454529-454616,454703-455057,455151-455407	AT4G01040.1  CDS  gene_syn F2N1.39-01, F2N1_39-01  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function chitinase activity|GO:0004568||IEA  go_function cation binding|GO:0043169||IEA  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 18 protein  note glycosyl hydrolase family 18 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, chitinase activity, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chitinase II (InterPro:IPR011583), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); Has 455 Blast hits to 452 proteins in 165 species: Archae - 0; Bacteria - 244; Metazoa - 167; Fungi - 2; Plants - 15; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT4G01040.1p  transcript_id AT4G01040.1  protein_id AT4G01040.1p  transcript_id AT4G01040.1  
At4g01050	chr4:000455874	0.0	W/455874-456496,456789-456891,456991-457077,457156-457230,457310-457384,457483-457563,457636-457944,458128-458175	AT4G01050.1  CDS  gene_syn F2N1.31, F2N1_31  function hydroxyproline-rich glycoprotein family protein, contains a rhodanese homology domain.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to bacterium; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: rhodanese-like domain-containing protein (TAIR:AT3G25480.1); Has 5481 Blast hits to 3687 proteins in 671 species: Archae - 23; Bacteria - 1925; Metazoa - 867; Fungi - 486; Plants - 510; Viruses - 160; Other Eukaryotes - 1510 (source: NCBI BLink).  protein_id AT4G01050.1p  transcript_id AT4G01050.1  protein_id AT4G01050.1p  transcript_id AT4G01050.1  
At4g01060	chr4:000460534	0.0	W/460534-460597,460696-460789,460892-460967	AT4G01060.1  CDS  gene_syn CAPRICE-LIKE MYB3, CPL3, ENHANCER OF TRY AND CPC 3, ETC3, F2N1.40, F2N1_40  gene CPL3  function Encodes a Myb-related protein similar to CPC. Involved in epidermal cell differentiation. Mutants have reduced numbers of root hairs and increased trichome branching. Involved in endoreduplication. Loss of function mutants are hypertrophic and early flowering.  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process trichome differentiation|GO:0010026|18305006|IMP  go_process vegetative to reproductive phase transition|GO:0010228|18305006|IMP  go_process root hair cell differentiation|GO:0048765|18305006|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product CPL3 (CAPRICE-LIKE MYB3); DNA binding / transcription factor  note CAPRICE-LIKE MYB3 (CPL3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 8 processes; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: ETC1 (ENHANCER OF TRY AND CPC 1); DNA binding / transcription factor (TAIR:AT1G01380.1); Has 1730 Blast hits to 1730 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1719; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT4G01060.1p  transcript_id AT4G01060.1  protein_id AT4G01060.1p  transcript_id AT4G01060.1  
At4g01060	chr4:000460534	0.0	W/460534-460597,460702-460789,460892-460967	AT4G01060.3  CDS  gene_syn CAPRICE-LIKE MYB3, CPL3, ENHANCER OF TRY AND CPC 3, ETC3, F2N1.40, F2N1_40  gene CPL3  function Encodes a Myb-related protein similar to CPC. Involved in epidermal cell differentiation. Mutants have reduced numbers of root hairs and increased trichome branching. Involved in endoreduplication. Loss of function mutants are hypertrophic and early flowering.  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process trichome differentiation|GO:0010026|18305006|IMP  go_process vegetative to reproductive phase transition|GO:0010228|18305006|IMP  go_process root hair cell differentiation|GO:0048765|18305006|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product CPL3 (CAPRICE-LIKE MYB3); DNA binding / transcription factor  note CAPRICE-LIKE MYB3 (CPL3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 8 processes; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: ETC1 (ENHANCER OF TRY AND CPC 1); DNA binding / transcription factor (TAIR:AT1G01380.1); Has 1730 Blast hits to 1730 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1719; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT4G01060.3p  transcript_id AT4G01060.3  protein_id AT4G01060.3p  transcript_id AT4G01060.3  
At4g01060	chr4:000460534	0.0	W/460534-460597,460705-460789,460892-460967	AT4G01060.2  CDS  gene_syn CAPRICE-LIKE MYB3, CPL3, ENHANCER OF TRY AND CPC 3, ETC3, F2N1.40, F2N1_40  gene CPL3  function Encodes a Myb-related protein similar to CPC. Involved in epidermal cell differentiation. Mutants have reduced numbers of root hairs and increased trichome branching. Involved in endoreduplication. Loss of function mutants are hypertrophic and early flowering.  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process trichome differentiation|GO:0010026|18305006|IMP  go_process vegetative to reproductive phase transition|GO:0010228|18305006|IMP  go_process root hair cell differentiation|GO:0048765|18305006|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product CPL3 (CAPRICE-LIKE MYB3); DNA binding / transcription factor  note CAPRICE-LIKE MYB3 (CPL3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 8 processes; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: ETC1 (ENHANCER OF TRY AND CPC 1); DNA binding / transcription factor (TAIR:AT1G01380.1); Has 1730 Blast hits to 1730 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1719; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT4G01060.2p  transcript_id AT4G01060.2  protein_id AT4G01060.2p  transcript_id AT4G01060.2  
At4g01070	chr4:000461858	0.0	C/461858-463300	AT4G01070.1  CDS  gene_syn F2N1.15, F2N1_15, GT72B1, UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UGT72B1  gene GT72B1  function the glycosyltransferase (UGT72B1) is involved in metabolizing xenobiotica (chloroaniline and chlorophenole). Comparison between wild type and knock-out mutant demonstrates the central role of this gene for metabolizing chloroaniline but significantly less for chlorophenole. The glucosyltransferase preferred UDP-xylose over UDP-glucose indicating its (additional) functioning as a xylosyltransferase in planta  go_process response to salt stress|GO:0009651|17916636|IEP  go_process xenobiotic metabolic process|GO:0006805|15860014|IMP  go_process response to toxin|GO:0009636|12753587|IDA  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_process xenobiotic catabolic process|GO:0042178|12753587|IDA  go_function UDP-glycosyltransferase activity|GO:0008194|12753587|IDA  go_function UDP-glycosyltransferase activity|GO:0008194|15678424|IDA  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function UDP-glucosyltransferase activity|GO:0035251|15860014|IMP  product GT72B1; UDP-glucosyltransferase/ UDP-glycosyltransferase/ transferase, transferring glycosyl groups  note GT72B1; FUNCTIONS IN: UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: xenobiotic metabolic process, response to cyclopentenone, response to salt stress, response to toxin, xenobiotic catabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT72B3 (UDP-GLUCOSYL TRANSFERASE 72B3); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT1G01420.1); Has 4794 Blast hits to 4767 proteins in 262 species: Archae - 0; Bacteria - 33; Metazoa - 1981; Fungi - 21; Plants - 2697; Viruses - 34; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT4G01070.1p  transcript_id AT4G01070.1  protein_id AT4G01070.1p  transcript_id AT4G01070.1  
At4g01080	chr4:000468020	0.0	C/468020-468275,467516-467802,466626-467411	AT4G01080.1  CDS  gene_syn F2N1.14, F2N1_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G01430.1); Has 703 Blast hits to 691 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 701; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G01080.1p  transcript_id AT4G01080.1  protein_id AT4G01080.1p  transcript_id AT4G01080.1  
At4g01090	chr4:000471447	0.0	C/471447-473248,471299-471359,470982-471205,470834-470891	AT4G01090.1  CDS  gene_syn F2N1.13, F2N1_13  product extra-large G-protein-related  note extra-large G-protein-related; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: extra-large G-protein-related (TAIR:AT1G01440.1); Has 1293 Blast hits to 1199 proteins in 189 species: Archae - 0; Bacteria - 45; Metazoa - 453; Fungi - 263; Plants - 305; Viruses - 2; Other Eukaryotes - 225 (source: NCBI BLink).  protein_id AT4G01090.1p  transcript_id AT4G01090.1  protein_id AT4G01090.1p  transcript_id AT4G01090.1  
At4g01100	chr4:000477411	0.0	W/477411-477562,478028-478076,478156-478319,478433-478470,478679-478791,478875-478988,479076-479420,479507-479590	AT4G01100.1  CDS  gene_syn ADENINE NUCLEOTIDE TRANSPORTER 1, ADNT1, F2N1.16, F2N1_16  gene ADNT1  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_component plastid|GO:0009536|16618929|IDA  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_process aerobic respiration|GO:0009060|18923018|IDA  go_process ADP transport|GO:0015866|18923018|IDA  go_process ATP transport|GO:0015867|18923018|IDA  go_process AMP transport|GO:0080121|18923018|IDA  go_function ATP transmembrane transporter activity|GO:0005347|18923018|IDA  go_function binding|GO:0005488||ISS  go_function ADP transmembrane transporter activity|GO:0015217|18923018|IDA  go_function AMP transmembrane transporter activity|GO:0080122|18923018|IDA  product ADNT1 (ADENINE NUCLEOTIDE TRANSPORTER 1); ADP transmembrane transporter/ AMP transmembrane transporter/ ATP transmembrane transporter/ binding  note ADENINE NUCLEOTIDE TRANSPORTER 1 (ADNT1); FUNCTIONS IN: binding, ADP transmembrane transporter activity, AMP transmembrane transporter activity, ATP transmembrane transporter activity; INVOLVED IN: in 6 processes; LOCATED IN: mitochondrion, mitochondrial inner membrane, plasma membrane, plastid, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: mitochondrial substrate carrier family protein (TAIR:AT5G51050.1); Has 20204 Blast hits to 10344 proteins in 365 species: Archae - 0; Bacteria - 0; Metazoa - 10389; Fungi - 5277; Plants - 2571; Viruses - 0; Other Eukaryotes - 1967 (source: NCBI BLink).  protein_id AT4G01100.1p  transcript_id AT4G01100.1  protein_id AT4G01100.1p  transcript_id AT4G01100.1  
At4g01110	chr4:000480290	0.0	C/480290-481056,480176-480194	AT4G01110.1  CDS  gene_syn F2N1.3, F2N1_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G01453.1); Has 141 Blast hits to 140 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G01110.1p  transcript_id AT4G01110.1  protein_id AT4G01110.1p  transcript_id AT4G01110.1  
At4g01120	chr4:000483905	0.0	C/483905-483970,483759-483806,483571-483666,483418-483498,483281-483322,483034-483197,482903-482951,482767-482815,482536-482675,482366-482443,482147-482272,481929-482072	AT4G01120.1  CDS  gene_syn ATBZIP54, BASIC REGION/LEUCINE ZIPPER MOTIF 5, F2N1.12, F2N1_12, G-BOX BINDING FACTOR 2, GBF2  gene GBF2  function bZIP (basic leucine zipper) transcription factor that binds to the G-box regulatory element found in many plant promoters. GBF2 nuclear localization is increased by blue light  go_component nucleus|GO:0005634|9193069|IDA  go_component cytoplasm|GO:0005737|9193069|IDA  go_process response to blue light|GO:0009637|9193069|IDA  go_function DNA binding|GO:0003677|1373374|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700|1373374|ISS  go_function sequence-specific DNA binding|GO:0043565|1373374|IDA  product GBF2 (G-BOX BINDING FACTOR 2); DNA binding / sequence-specific DNA binding / transcription factor  note G-BOX BINDING FACTOR 2 (GBF2); FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding, DNA binding; INVOLVED IN: response to blue light; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), G-box binding, MFMR (InterPro:IPR012900), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: GBF3 (G-BOX BINDING FACTOR 3); sequence-specific DNA binding / transcription factor (TAIR:AT2G46270.2); Has 1572 Blast hits to 1543 proteins in 180 species: Archae - 0; Bacteria - 18; Metazoa - 493; Fungi - 95; Plants - 840; Viruses - 1; Other Eukaryotes - 125 (source: NCBI BLink).  protein_id AT4G01120.1p  transcript_id AT4G01120.1  protein_id AT4G01120.1p  transcript_id AT4G01120.1  
At4g01130	chr4:000485868	0.0	W/485868-486111,486717-486935,487024-487181,487362-487632,487751-488007	AT4G01130.1  CDS  gene_syn F2N1.17, F2N1_17  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product acetylesterase, putative  note acetylesterase, putative; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT3G26430.1); Has 1707 Blast hits to 1677 proteins in 112 species: Archae - 0; Bacteria - 95; Metazoa - 1; Fungi - 41; Plants - 1566; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G01130.1p  transcript_id AT4G01130.1  protein_id AT4G01130.1p  transcript_id AT4G01130.1  
At4g01140	chr4:000491012	0.0	C/491012-491932	AT4G01140.1  CDS  gene_syn F2N1.38, F2N1_38  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, inflorescence meristem, flower, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1191 (InterPro:IPR010605); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23720.1); Has 62 Blast hits to 62 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G01140.1p  transcript_id AT4G01140.1  protein_id AT4G01140.1p  transcript_id AT4G01140.1  
At4g01150	chr4:000493692	0.0	W/493692-493839,494062-494162,494251-494358,494449-494520,494603-494668	AT4G01150.1  CDS  gene_syn F2N1.18, F2N1_18  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_component plastoglobule|GO:0010287|16461379|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38100.1); Has 229 Blast hits to 229 proteins in 43 species: Archae - 0; Bacteria - 81; Metazoa - 0; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT4G01150.1p  transcript_id AT4G01150.1  protein_id AT4G01150.1p  transcript_id AT4G01150.1  
At4g01150	chr4:000493692	0.0	W/493692-493839,494062-494162,494251-494379	AT4G01150.2  CDS  gene_syn F2N1.18, F2N1_18  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component plastoglobule|GO:0010287|16461379|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 10 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G01150.2p  transcript_id AT4G01150.2  protein_id AT4G01150.2p  transcript_id AT4G01150.2  
At4g01160	chr4:000496842	0.0	C/496842-497006,496621-496690,496425-496537,496249-496312,495884-496163,494976-495801	AT4G01160.1  CDS  gene_syn F2N1.11, F2N1_11  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_function protein binding|GO:0005515||ISS  product BTB/POZ domain-containing protein  note BTB/POZ domain-containing protein; FUNCTIONS IN: protein binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/Kelch-associated (InterPro:IPR011705), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: ATPOB1; protein binding (TAIR:AT3G61600.2); Has 3270 Blast hits to 3239 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 3057; Fungi - 2; Plants - 79; Viruses - 43; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT4G01160.1p  transcript_id AT4G01160.1  protein_id AT4G01160.1p  transcript_id AT4G01160.1  
At4g01170	chr4:000499497	0.0	W/499497-500831	AT4G01170.1  CDS  gene_syn F2N1.37, F2N1_37  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G07730.1); Has 154 Blast hits to 154 proteins in 42 species: Archae - 0; Bacteria - 14; Metazoa - 44; Fungi - 4; Plants - 45; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT4G01170.1p  transcript_id AT4G01170.1  protein_id AT4G01170.1p  transcript_id AT4G01170.1  
At4g01180	chr4:000503031	0.0	C/503031-503394,502677-502958,502401-502582,502256-502324,501914-502195,501633-501830,501287-501574	AT4G01180.1  CDS  gene_syn F2N1.10, F2N1_10  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product XH/XS domain-containing protein  note XH/XS domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Region of unknown function XS (InterPro:IPR005380), Region of unknown function XH (InterPro:IPR005379); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein (TAIR:AT5G59390.1); Has 41326 Blast hits to 25851 proteins in 1210 species: Archae - 456; Bacteria - 3830; Metazoa - 20451; Fungi - 2156; Plants - 948; Viruses - 157; Other Eukaryotes - 13328 (source: NCBI BLink).  protein_id AT4G01180.1p  transcript_id AT4G01180.1  protein_id AT4G01180.1p  transcript_id AT4G01180.1  
At4g01190	chr4:000506013	0.0	C/506013-506131,505761-505923,505553-505663,505285-505472,505100-505191,504963-505010,504774-504869,504582-504690,504211-504490	AT4G01190.1  CDS  gene_syn ATPIPK10, Arabidopsis phosphatidylinositol phosphate kinase 10, F2N1.9, F2N1_9  gene ATPIPK10  function Type I phosphatidylinositol-4-phosphate 5-kinase, subfamily A. Preferentially phosphorylates PtdIns4P. Expressed in flowers and inflorescence stems.  go_process phosphatidylinositol metabolic process|GO:0046488||IEA  go_component cellular_component|GO:0005575||ND  go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308|15949803|IDA  go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308||ISS  product ATPIPK10 (Arabidopsis phosphatidylinositol phosphate kinase 10); 1-phosphatidylinositol-4-phosphate 5-kinase  note Arabidopsis phosphatidylinositol phosphate kinase 10 (ATPIPK10); FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity; INVOLVED IN: phosphatidylinositol metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: PIPK11; 1-phosphatidylinositol-4-phosphate 5-kinase/ phosphatidylinositol phosphate kinase (TAIR:AT1G01460.1); Has 1299 Blast hits to 1167 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 647; Fungi - 193; Plants - 206; Viruses - 0; Other Eukaryotes - 253 (source: NCBI BLink).  protein_id AT4G01190.1p  transcript_id AT4G01190.1  protein_id AT4G01190.1p  transcript_id AT4G01190.1  
At4g01200	chr4:000506783	0.0	C/506783-507535	AT4G01200.1  CDS  gene_syn F2N1.36, F2N1_36  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT2G33320.1); Has 143 Blast hits to 143 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G01200.1p  transcript_id AT4G01200.1  protein_id AT4G01200.1p  transcript_id AT4G01200.1  
At4g01210	chr4:000511910	0.0	C/511910-512362,511734-511820,511534-511643,511200-511250,510847-511018,510444-510728,510133-510336,509547-510032,509251-509460,508967-509155,508714-508877,508468-508617,508294-508372,507738-508193	AT4G01210.1  CDS  gene_syn F2N1.24, F2N1_24  go_process biosynthetic process|GO:0009058||IEA  go_component cellular_component|GO:0005575||ND  go_process biosynthetic process|GO:0009058||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product transferase, transferring glycosyl groups  note transferase, transferring glycosyl groups; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04480.1); Has 638 Blast hits to 636 proteins in 100 species: Archae - 6; Bacteria - 195; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 410 (source: NCBI BLink).  protein_id AT4G01210.1p  transcript_id AT4G01210.1  protein_id AT4G01210.1p  transcript_id AT4G01210.1  
At4g01220	chr4:000515157	0.0	C/515157-515648,514476-514637,514146-514391	AT4G01220.2  CDS  gene_syn F2N1.35, F2N1_35  go_component endoplasmic reticulum|GO:0005783||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: RGXT1 (rhamnogalacturonan xylosyltransferase 1); UDP-xylosyltransferase (TAIR:AT4G01770.1); Has 153 Blast hits to 150 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 142; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT4G01220.2p  transcript_id AT4G01220.2  protein_id AT4G01220.2p  transcript_id AT4G01220.2  
At4g01220	chr4:000515157	0.0	C/515157-515648,514476-514637,514176-514391,513431-513643	AT4G01220.1  CDS  gene_syn F2N1.35, F2N1_35  go_component endoplasmic reticulum|GO:0005783||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: RGXT1 (rhamnogalacturonan xylosyltransferase 1); UDP-xylosyltransferase (TAIR:AT4G01770.1); Has 188 Blast hits to 185 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 165; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT4G01220.1p  transcript_id AT4G01220.1  protein_id AT4G01220.1p  transcript_id AT4G01220.1  
At4g01230	chr4:000517207	0.0	C/517207-517408,516865-517036,516638-516779,516489-516558,516264-516406	AT4G01230.1  CDS  gene_syn F2N1.8, F2N1_8  go_component endoplasmic reticulum|GO:0005783||IEA  go_component endoplasmic reticulum|GO:0005783||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product reticulon family protein (RTNLB7)  note reticulon family protein (RTNLB7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: reticulon family protein (RTNLB5) (TAIR:AT2G46170.1); Has 861 Blast hits to 861 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 575; Fungi - 11; Plants - 259; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT4G01230.1p  transcript_id AT4G01230.1  protein_id AT4G01230.1p  transcript_id AT4G01230.1  
At4g01240	chr4:000521924	0.0	C/521924-521972,520395-520720,520094-520334,517795-519158	AT4G01240.1  CDS  gene_syn F2N1.7, F2N1_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05390.1); Has 228 Blast hits to 218 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 228; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G01240.1p  transcript_id AT4G01240.1  protein_id AT4G01240.1p  transcript_id AT4G01240.1  
At4g01250	chr4:000523798	0.0	C/523798-524129,523477-523587,522839-523292	AT4G01250.1  CDS  gene_syn AtWRKY22, F2N1.6, F2N1_6, WRKY22  gene WRKY22  function member of WRKY Transcription Factor; Group II-e  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_process response to chitin|GO:0010200|17722694|IEP  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY22; transcription factor  note WRKY22; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to chitin, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY27; transcription factor (TAIR:AT5G52830.1); Has 1940 Blast hits to 1664 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 1925; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT4G01250.1p  transcript_id AT4G01250.1  protein_id AT4G01250.1p  transcript_id AT4G01250.1  
At4g01245	chr4:000527591	0.0	W/527591-527688,527809-527911,527989-528144	AT4G01245.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G01270.1); Has 14 Blast hits to 14 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G01245.1p  transcript_id AT4G01245.1  protein_id AT4G01245.1p  transcript_id AT4G01245.1  
At4g01260	chr4:000528570	0.0	C/528570-529547	AT4G01260.1  CDS  gene_syn F2N1.32, F2N1_32  go_process biological_process|GO:0008150||ND  go_function transcription regulator activity|GO:0030528|12535344|TAS  product transcription regulator  note transcription regulator; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: transcription regulator (TAIR:AT4G25210.1); Has 1006 Blast hits to 789 proteins in 130 species: Archae - 0; Bacteria - 42; Metazoa - 303; Fungi - 98; Plants - 157; Viruses - 0; Other Eukaryotes - 406 (source: NCBI BLink).  protein_id AT4G01260.1p  transcript_id AT4G01260.1  protein_id AT4G01260.1p  transcript_id AT4G01260.1  
At4g01265	chr4:000529822	0.0	C/529822-531774	AT4G01265.1  pseudogenic_transcript  pseudo  function Pseudogene of AT4G01265; raffinose synthase family protein  note similar to ATSIP1 (ARABIDOPSIS THALIANA SEED IMBIBITION 1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT1G55740.1); similar to unknown [Populus trichocarpa] (GB:ABK95734.1); contains InterPro domain Raffinose synthase (InterPro:IPR008811)  
At4g01270	chr4:000532351	0.0	W/532351-532469,532563-532830,532928-533029,533127-533209,533319-533435,533835-533937,534015-534438,534508-534695,534775-534891	AT4G01270.1  CDS  gene_syn F2N1.19, F2N1_19  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01245.1); Has 4672 Blast hits to 4087 proteins in 341 species: Archae - 82; Bacteria - 242; Metazoa - 2567; Fungi - 269; Plants - 276; Viruses - 10; Other Eukaryotes - 1226 (source: NCBI BLink).  protein_id AT4G01270.1p  transcript_id AT4G01270.1  protein_id AT4G01270.1p  transcript_id AT4G01270.1  
At4g01280	chr4:000535288	0.0	W/535288-535514,535600-535657,535747-535870,535948-536112,536211-536336,536423-536532,536645-536704,536813-536854	AT4G01280.2  CDS  gene_syn F2N1.20, F2N1_20  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 9 processes; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT1G01520.1); Has 762 Blast hits to 756 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 45; Fungi - 0; Plants - 631; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT4G01280.2p  transcript_id AT4G01280.2  protein_id AT4G01280.2p  transcript_id AT4G01280.2  
At4g01280	chr4:000535288	0.0	W/535288-535514,535600-535657,535747-535870,535948-536112,536214-536336,536423-536532,536645-536704,536813-536854	AT4G01280.1  CDS  gene_syn F2N1.20, F2N1_20  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 9 processes; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT1G01520.1); Has 761 Blast hits to 755 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 43; Fungi - 0; Plants - 630; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT4G01280.1p  transcript_id AT4G01280.1  protein_id AT4G01280.1p  transcript_id AT4G01280.1  
At4g01290	chr4:000543212	0.0	C/543212-543282,543017-543124,542701-542903,542165-542358,541893-542001,541484-541764,540447-540863,539945-540029,538541-539878,538213-538379	AT4G01290.2  CDS  gene_syn F2N1.34, F2N1_34  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 1565 Blast hits to 1181 proteins in 159 species: Archae - 0; Bacteria - 113; Metazoa - 805; Fungi - 222; Plants - 70; Viruses - 0; Other Eukaryotes - 355 (source: NCBI BLink).  protein_id AT4G01290.2p  transcript_id AT4G01290.2  protein_id AT4G01290.2p  transcript_id AT4G01290.2  
At4g01290	chr4:000543212	0.0	C/543212-543282,543017-543124,542701-542903,542165-542361,541893-542001,541484-541764,540447-540863,539945-540029,538541-539878,538213-538379	AT4G01290.1  CDS  gene_syn F2N1.34, F2N1_34  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 1490 Blast hits to 1141 proteins in 165 species: Archae - 0; Bacteria - 129; Metazoa - 747; Fungi - 206; Plants - 73; Viruses - 0; Other Eukaryotes - 335 (source: NCBI BLink).  protein_id AT4G01290.1p  transcript_id AT4G01290.1  protein_id AT4G01290.1p  transcript_id AT4G01290.1  
At4g01310	chr4:000545235	0.0	C/545235-545480,544746-544946,544518-544660,544166-544364	AT4G01310.1  CDS  gene_syn F2N1.5, F2N1_5  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component cytosolic large ribosomal subunit|GO:0022625||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L5 family protein  note ribosomal protein L5 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L5 (InterPro:IPR002132); Has 6408 Blast hits to 6408 proteins in 1765 species: Archae - 218; Bacteria - 2994; Metazoa - 181; Fungi - 187; Plants - 230; Viruses - 0; Other Eukaryotes - 2598 (source: NCBI BLink).  protein_id AT4G01310.1p  transcript_id AT4G01310.1  protein_id AT4G01310.1p  transcript_id AT4G01310.1  
At4g01320	chr4:000545905	0.0	W/545905-545935,546631-546778,546862-546946,547033-547128,547225-547290,547377-547475,547621-547734,547829-547939,548020-548082,548169-548261,548356-548469,548572-548643,548736-548801,548886-549002	AT4G01320.1  CDS  gene_syn ATSTE24, F2N1.21, F2N1_21, STE24  gene ATSTE24  function CAAX protease with broad substrate specificity. Localized exclusively to the endoplasmic reticulum.  go_component vacuole|GO:0005773|15215502|IDA  go_component endoplasmic reticulum|GO:0005783|12039957|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process proteolysis|GO:0006508|12039957|IDA  go_process CAAX-box protein processing|GO:0080120|12039957|IDA  go_function endopeptidase activity|GO:0004175|12039957|IDA  go_function metalloendopeptidase activity|GO:0004222|12039957|ISS  product ATSTE24; endopeptidase/ metalloendopeptidase  note ATSTE24; FUNCTIONS IN: endopeptidase activity, metalloendopeptidase activity; INVOLVED IN: proteolysis, CAAX-box protein processing; LOCATED IN: endoplasmic reticulum, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M48, Ste24p (InterPro:IPR001915); Has 2147 Blast hits to 2144 proteins in 617 species: Archae - 98; Bacteria - 922; Metazoa - 186; Fungi - 107; Plants - 29; Viruses - 0; Other Eukaryotes - 805 (source: NCBI BLink).  protein_id AT4G01320.1p  transcript_id AT4G01320.1  protein_id AT4G01320.1p  transcript_id AT4G01320.1  
At4g01328	chr4:000550233	0.0	C/550233-550376	AT4G01328.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G01328.1p  transcript_id AT4G01328.1  protein_id AT4G01328.1p  transcript_id AT4G01328.1  
At4g01330	chr4:000550723	0.0	W/550723-551309,551570-551674,551767-551889,551976-552146,552248-552377,552447-552656,552734-552847	AT4G01330.1  CDS  gene_syn F2N1.22, F2N1_22  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G01540.2); Has 62408 Blast hits to 61982 proteins in 2735 species: Archae - 19; Bacteria - 4713; Metazoa - 27742; Fungi - 4275; Plants - 16191; Viruses - 174; Other Eukaryotes - 9294 (source: NCBI BLink).  protein_id AT4G01330.1p  transcript_id AT4G01330.1  protein_id AT4G01330.1p  transcript_id AT4G01330.1  
At4g01335	chr4:000553495	0.0	W/553495-553617,553732-553911	AT4G01335.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: CHP-rich zinc finger protein-related (TAIR:AT4G01340.1).  protein_id AT4G01335.1p  transcript_id AT4G01335.1  protein_id AT4G01335.1p  transcript_id AT4G01335.1  
At4g01340	chr4:000554539	0.0	W/554539-554642,554909-554961,555037-555226,555751-555851,556634-556764,556860-556961	AT4G01340.1  CDS  gene_syn F2N1.28, F2N1_28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product CHP-rich zinc finger protein-related  note CHP-rich zinc finger protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G01350.1); Has 183 Blast hits to 174 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 183; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G01340.1p  transcript_id AT4G01340.1  protein_id AT4G01340.1p  transcript_id AT4G01340.1  
At4g01350	chr4:000560340	0.0	W/560340-562298	AT4G01350.1  CDS  gene_syn F2N1.27, F2N1_27  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process response to chitin|GO:0010200|17722694|IEP  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: response to chitin; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: ULI3; diacylglycerol binding / heme binding (TAIR:AT5G59920.1); Has 1540 Blast hits to 570 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 4; Plants - 1455; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT4G01350.1p  transcript_id AT4G01350.1  protein_id AT4G01350.1p  transcript_id AT4G01350.1  
At4g01355	chr4:000562561	0.0	C/562561-562634	AT4G01355.1  tRNA  gene_syn 67039.TRNA-VAL-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Val (anticodon: AAC)  transcript_id AT4G01355.1  
At4g01360	chr4:000565147	0.0	W/565147-566193	AT4G01360.1  CDS  gene_syn F2N1.26, F2N1_26  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: BPS1 (BYPASS 1) (TAIR:AT1G01550.2); Has 59 Blast hits to 59 proteins in 12 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G01360.1p  transcript_id AT4G01360.1  protein_id AT4G01360.1p  transcript_id AT4G01360.1  
At4g01370	chr4:000567219	0.0	W/567219-567391,567523-567652,567721-567858,568048-568380,568461-568644,568717-568889	AT4G01370.1  CDS  gene_syn ARABIDOPSIS THALIANA MAP KINASE 4, ATMPK4, F2N1.1, F2N1_1, MAP KINASE 4, MPK4  gene ATMPK4  function Encodes a nuclear and cytoplasmically localized MAP kinase involved in mediating responses to pathogens. Its substrates include MKS1.  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleus|GO:0005634|15990873|IDA  go_component cytoplasm|GO:0005737|15990873|IDA  go_process response to stress|GO:0006950|12119167|TAS  go_process hyperosmotic response|GO:0006972|15358537|IMP  go_process signal transduction|GO:0007165|12119167|IC  go_process response to cold|GO:0009409|15225555|IDA  go_process response to biotic stimulus|GO:0009607|11123804|TAS  go_process response to fungus|GO:0009620|16813576|IMP  go_process response to salt stress|GO:0009651|15225555|IDA  go_process response to abscisic acid stimulus|GO:0009737|18248592|IEP  go_process jasmonic acid and ethylene-dependent systemic resistance|GO:0009861|16813576|IMP  go_process systemic acquired resistance, salicylic acid mediated signaling pathway|GO:0009862|12119167|TAS  go_process systemic acquired resistance, salicylic acid mediated signaling pathway|GO:0009862|16813576|IMP  go_process jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway|GO:0009868|11544109|TAS  go_process phosphorylation|GO:0016310|15990873|IDA  go_process hypotonic salinity response|GO:0042539|15358537|IDA  go_function MAP kinase activity|GO:0004707|12119167|ISS  go_function MAP kinase activity|GO:0004707|15990873|IDA  go_function MAP kinase activity|GO:0004707|8282107|ISS  go_function kinase activity|GO:0016301||ISS  product ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4); MAP kinase/ kinase  note ARABIDOPSIS THALIANA MAP KINASE 4 (ATMPK4); FUNCTIONS IN: MAP kinase activity, kinase activity; INVOLVED IN: in 13 processes; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), JNK MAP kinase (InterPro:IPR008351), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: ATMPK11; MAP kinase/ kinase (TAIR:AT1G01560.2); Has 90164 Blast hits to 89031 proteins in 3236 species: Archae - 47; Bacteria - 7154; Metazoa - 40148; Fungi - 8164; Plants - 17109; Viruses - 436; Other Eukaryotes - 17106 (source: NCBI BLink).  protein_id AT4G01370.1p  transcript_id AT4G01370.1  protein_id AT4G01370.1p  transcript_id AT4G01370.1  
At4g01380	chr4:000570005	0.0	C/570005-570076,569723-569866,569148-569564	AT4G01380.1  CDS  gene_syn F2N1.2, F2N1_2  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function copper ion binding|GO:0005507||ISS  product plastocyanin-like domain-containing protein  note plastocyanin-like domain-containing protein; FUNCTIONS IN: electron carrier activity, copper ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: copper ion binding / electron carrier (TAIR:AT1G45063.2); Has 714 Blast hits to 680 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 714; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G01380.1p  transcript_id AT4G01380.1  protein_id AT4G01380.1p  transcript_id AT4G01380.1  
At4g01390	chr4:000571571	0.0	C/571571-571595,571356-571485,571114-571262,570729-571011,570474-570640,570242-570390	AT4G01390.1  CDS  gene_syn F2N1.33, F2N1_33  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: stem, cotyledon, hypocotyl, root, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT4G00780.1); Has 248 Blast hits to 240 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 237; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT4G01390.1p  transcript_id AT4G01390.1  protein_id AT4G01390.1p  transcript_id AT4G01390.1  
At4g01400	chr4:000574062	0.0	C/574062-575648,573098-573727	AT4G01400.2  CDS  gene_syn F3D13.1, F3D13_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COG4 transport (InterPro:IPR013167).  protein_id AT4G01400.2p  transcript_id AT4G01400.2  protein_id AT4G01400.2p  transcript_id AT4G01400.2  
At4g01400	chr4:000575843	0.0	C/575843-577243	AT4G01400.3  CDS  gene_syn F3D13.1, F3D13_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G46100.1).  protein_id AT4G01400.3p  transcript_id AT4G01400.3  protein_id AT4G01400.3p  transcript_id AT4G01400.3  
At4g01400	chr4:000576465	0.0	C/576465-577243,575917-576242,574062-575659,573098-573727	AT4G01400.1  CDS  gene_syn F3D13.1, F3D13_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COG4 transport (InterPro:IPR013167), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G46100.1); Has 11639 Blast hits to 3936 proteins in 180 species: Archae - 0; Bacteria - 2; Metazoa - 206; Fungi - 141; Plants - 11004; Viruses - 0; Other Eukaryotes - 286 (source: NCBI BLink).  protein_id AT4G01400.1p  transcript_id AT4G01400.1  protein_id AT4G01400.1p  transcript_id AT4G01400.1  
At4g01410	chr4:000578308	0.0	W/578308-578991	AT4G01410.1  CDS  gene_syn F3D13.5, F3D13_5  go_component plasma membrane|GO:0005886|14506206|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product harpin-induced family protein / HIN1 family protein / harpin-responsive family protein  note harpin-induced family protein / HIN1 family protein / harpin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: hairpin-responsive protein, putative (HIN1) (TAIR:AT5G06330.1); Has 643 Blast hits to 643 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 643; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G01410.1p  transcript_id AT4G01410.1  protein_id AT4G01410.1p  transcript_id AT4G01410.1  
At4g01420	chr4:000581443	0.0	C/581443-581518,581237-581319,581030-581089,580848-580956,580667-580719,580499-580579,580301-580413,580038-580074	AT4G01420.1  CDS  gene_syn CALCINEURIN B-LIKE PROTEIN 5, CBL5, F3D13.2, F3D13_2  gene CBL5  function Encodes calcineurin B-like protein 5 (CBL5).  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_process calcium-mediated signaling|GO:0019722|11230129|TAS  go_function calcium ion binding|GO:0005509|11230129|ISS  go_function calcium ion binding|GO:0005509||ISS  product CBL5 (CALCINEURIN B-LIKE PROTEIN 5); calcium ion binding  note CALCINEURIN B-LIKE PROTEIN 5 (CBL5); FUNCTIONS IN: calcium ion binding; INVOLVED IN: N-terminal protein myristoylation, calcium-mediated signaling; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), Recoverin (InterPro:IPR001125), EF-HAND 2 (InterPro:IPR018249), Calcineurin B protein (InterPro:IPR015757), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: SOS3 (SALT OVERLY SENSITIVE 3); calcium ion binding / calcium-dependent protein serine/threonine phosphatase (TAIR:AT5G24270.1); Has 4464 Blast hits to 4460 proteins in 548 species: Archae - 0; Bacteria - 7; Metazoa - 2400; Fungi - 741; Plants - 892; Viruses - 0; Other Eukaryotes - 424 (source: NCBI BLink).  protein_id AT4G01420.1p  transcript_id AT4G01420.1  protein_id AT4G01420.1p  transcript_id AT4G01420.1  
At4g01430	chr4:000585707	0.0	W/585707-585888,586158-586220,586393-586509,586587-586998,587432-587583,587675-587846	AT4G01430.1  CDS  gene_syn F3D13.4, F3D13_4  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  product nodulin MtN21 family protein  note nodulin MtN21 family protein; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT1G01070.1); Has 1272 Blast hits to 1261 proteins in 198 species: Archae - 10; Bacteria - 464; Metazoa - 6; Fungi - 6; Plants - 628; Viruses - 0; Other Eukaryotes - 158 (source: NCBI BLink).  protein_id AT4G01430.1p  transcript_id AT4G01430.1  protein_id AT4G01430.1p  transcript_id AT4G01430.1  
At4g01430	chr4:000585707	0.0	W/585707-585888,586587-586998,587432-587579,587675-587691	AT4G01430.2  CDS  gene_syn F3D13.4, F3D13_4  go_component endomembrane system|GO:0012505||IEA  product nodulin MtN21 family protein  note nodulin MtN21 family protein; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT1G01070.1); Has 630 Blast hits to 586 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 628; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G01430.2p  transcript_id AT4G01430.2  protein_id AT4G01430.2p  transcript_id AT4G01430.2  
At4g01440	chr4:000596531	0.0	W/596531-596715,596812-596874,597388-597504,597595-597994,598106-598257,598332-598512	AT4G01440.1  CDS  gene_syn F3D13.3, F3D13_3  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  product nodulin MtN21 family protein  note nodulin MtN21 family protein; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT4G01450.2); Has 1756 Blast hits to 1741 proteins in 258 species: Archae - 16; Bacteria - 698; Metazoa - 6; Fungi - 0; Plants - 629; Viruses - 0; Other Eukaryotes - 407 (source: NCBI BLink).  protein_id AT4G01440.1p  transcript_id AT4G01440.1  protein_id AT4G01440.1p  transcript_id AT4G01440.1  
At4g01450	chr4:000608586	0.0	W/608586-608770,609144-609206,609356-609472,609568-609857,610045-610127	AT4G01450.3  CDS  gene_syn F11O4.14, F11O4_14  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  product nodulin MtN21 family protein  note nodulin MtN21 family protein; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT4G01440.1); Has 821 Blast hits to 815 proteins in 111 species: Archae - 0; Bacteria - 199; Metazoa - 2; Fungi - 0; Plants - 571; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT4G01450.3p  transcript_id AT4G01450.3  protein_id AT4G01450.3p  transcript_id AT4G01450.3  
At4g01450	chr4:000608586	0.0	W/608586-608770,609144-609206,609356-609472,609568-609955,610045-610196,610307-610487	AT4G01450.2  CDS  gene_syn F11O4.14, F11O4_14  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  product nodulin MtN21 family protein  note nodulin MtN21 family protein; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT4G01440.1); Has 1498 Blast hits to 1482 proteins in 243 species: Archae - 12; Bacteria - 566; Metazoa - 4; Fungi - 6; Plants - 634; Viruses - 0; Other Eukaryotes - 276 (source: NCBI BLink).  protein_id AT4G01450.2p  transcript_id AT4G01450.2  protein_id AT4G01450.2p  transcript_id AT4G01450.2  
At4g01450	chr4:000608586	0.0	W/608586-608770,609144-609206,609356-609472,609568-609955,610045-610196,610361-610487	AT4G01450.1  CDS  gene_syn F11O4.14, F11O4_14  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  product nodulin MtN21 family protein  note nodulin MtN21 family protein; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT4G01440.1); Has 1053 Blast hits to 1041 proteins in 150 species: Archae - 0; Bacteria - 343; Metazoa - 4; Fungi - 0; Plants - 617; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT4G01450.1p  transcript_id AT4G01450.1  protein_id AT4G01450.1p  transcript_id AT4G01450.1  
At4g01455	chr4:000611866	0.0	C/611866-611932	AT4G01455.1  tRNA  gene_syn 67041.TRNA-GLU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Glu (anticodon: TTC)  transcript_id AT4G01455.1  
At4g01460	chr4:000621334	0.0	W/621334-621771,621873-622271,622587-622697	AT4G01460.1  CDS  gene_syn F11O4.13, F11O4_13  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT3G61950.2); Has 858 Blast hits to 848 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 21; Fungi - 25; Plants - 810; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G01460.1p  transcript_id AT4G01460.1  protein_id AT4G01460.1p  transcript_id AT4G01460.1  
At4g01470	chr4:000625092	0.0	C/625092-625850	AT4G01470.1  CDS  gene_syn F11O4.1, F11O4_1, GAMMA-TIP3, TIP1;3, TONOPLAST INTRINSIC PROTEIN 1;3  gene TIP1;3  function Encodes AtTIP1;3, functions as water and urea channels in pollen.  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_process urea transport|GO:0015840|19022253|IDA  go_function urea transmembrane transporter activity|GO:0015204|19022253|IDA  go_function water channel activity|GO:0015250|11500536|ISS  go_function water channel activity|GO:0015250|19022253|IDA  go_function water channel activity|GO:0015250||ISS  product TIP1;3 (TONOPLAST INTRINSIC PROTEIN 1;3); urea transmembrane transporter/ water channel  note TONOPLAST INTRINSIC PROTEIN 1;3 (TIP1;3); FUNCTIONS IN: water channel activity, urea transmembrane transporter activity; INVOLVED IN: urea transport, transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN); water channel (TAIR:AT2G36830.1); Has 6810 Blast hits to 6784 proteins in 1234 species: Archae - 59; Bacteria - 2614; Metazoa - 1290; Fungi - 278; Plants - 1459; Viruses - 0; Other Eukaryotes - 1110 (source: NCBI BLink).  protein_id AT4G01470.1p  transcript_id AT4G01470.1  protein_id AT4G01470.1p  transcript_id AT4G01470.1  
At4g01480	chr4:000626539	0.0	W/626539-626674,626750-626778,626856-626921,627002-627109,627192-627257,627352-627472,627553-627634,627716-627758	AT4G01480.1  CDS  gene_syn Arabidopsis thaliana pyrophosphorylase 5, AtPPa5, F11O4.12, F11O4_12  gene AtPPa5  function Encodes a protein that might have inorganic pyrophosphatase activity.  go_component cytoplasm|GO:0005737||IEA  go_process phosphate metabolic process|GO:0006796||IEA  go_component membrane|GO:0016020||ISS  go_process metabolic process|GO:0008152||ISS  go_function inorganic diphosphatase activity|GO:0004427|15135060|NAS  go_function pyrophosphatase activity|GO:0016462||ISS  product AtPPa5 (Arabidopsis thaliana pyrophosphorylase 5); inorganic diphosphatase/ pyrophosphatase  note Arabidopsis thaliana pyrophosphorylase 5 (AtPPa5); FUNCTIONS IN: inorganic diphosphatase activity, pyrophosphatase activity; INVOLVED IN: phosphate metabolic process, metabolic process; LOCATED IN: membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Inorganic pyrophosphatase (InterPro:IPR008162); BEST Arabidopsis thaliana protein match is: AtPPa1 (Arabidopsis thaliana pyrophosphorylase 1); inorganic diphosphatase (TAIR:AT1G01050.1); Has 4135 Blast hits to 4135 proteins in 1147 species: Archae - 108; Bacteria - 2773; Metazoa - 197; Fungi - 190; Plants - 182; Viruses - 0; Other Eukaryotes - 685 (source: NCBI BLink).  protein_id AT4G01480.1p  transcript_id AT4G01480.1  protein_id AT4G01480.1p  transcript_id AT4G01480.1  
At4g01490	chr4:000631136	0.0	W/631136-636899	AT4G01490.1  mRNA_TE_gene  pseudo  gene_syn F11O4.11, F11O4_11  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.4e-44 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At4g01500	chr4:000639791	0.0	W/639791-640792	AT4G01500.1  CDS  gene_syn F11O4.9, F11O4_9, NGA4, NGATHA4  gene NGA4  go_component cellular_component|GO:0005575||ND  go_process flower development|GO:0009908|16603651|IMP  go_process leaf development|GO:0048366|16603651|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product NGA4 (NGATHA4); transcription factor  note NGATHA4 (NGA4); FUNCTIONS IN: transcription factor activity; INVOLVED IN: flower development, leaf development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: NGA3 (NGATHA3); transcription factor (TAIR:AT1G01030.1); Has 729 Blast hits to 728 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 727; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G01500.1p  transcript_id AT4G01500.1  protein_id AT4G01500.1p  transcript_id AT4G01500.1  
At4g01505	chr4:000641462	0.0	W/641462-642214	AT4G01505.1  pseudogenic_transcript  pseudo  function Encodes a Plantacyanin/Basic blue family protein [pseudogene]  
At4g01510	chr4:000642755	0.0	W/642755-642850,642943-642990,643087-643176,643270-643315,643384-643457,643529-643611,643689-643755,643909-643984,644084-644190	AT4G01510.1  CDS  gene_syn ARV2, F11O4.16, F11O4_16  gene ARV2  go_component endoplasmic reticulum|GO:0005783|16725371|IDA  go_component membrane|GO:0016020||ISS  go_process sphingolipid metabolic process|GO:0006665|16725371|IMP  go_process sterol metabolic process|GO:0016125|16725371|IMP  go_function molecular_function|GO:0003674||ND  product ARV2  note ARV2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: sterol metabolic process, sphingolipid metabolic process; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Arv1-like protein (InterPro:IPR007290); BEST Arabidopsis thaliana protein match is: ARV1 (TAIR:AT1G01020.1); Has 227 Blast hits to 227 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 74; Plants - 18; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT4G01510.1p  transcript_id AT4G01510.1  protein_id AT4G01510.1p  transcript_id AT4G01510.1  
At4g01515	chr4:000647692	0.0	C/647692-649794	AT4G01515.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.1e-18 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At4g01516	chr4:000649862	0.0	W/649862-649957	AT4G01516.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G01516.1p  transcript_id AT4G01516.1  protein_id AT4G01516.1p  transcript_id AT4G01516.1  
At4g01520	chr4:000659022	0.0	C/659022-659178,658369-658640,656842-656967,656407-656760	AT4G01520.1  CDS  gene_syn Arabidopsis NAC domain containing protein 67, F11O4.3, F11O4_3, anac067  gene anac067  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac067 (Arabidopsis NAC domain containing protein 67); transcription factor  note Arabidopsis NAC domain containing protein 67 (anac067); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NTM1 (NAC WITH TRANSMEMBRANE MOTIF1); transcription activator/ transcription factor (TAIR:AT4G01540.2); Has 1437 Blast hits to 1435 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1437; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G01520.1p  transcript_id AT4G01520.1  protein_id AT4G01520.1p  transcript_id AT4G01520.1  
At4g01525	chr4:000660810	0.0	W/660810-661698	AT4G01525.1  mRNA_TE_gene  pseudo  gene_syn SADHU NON-CODING RETROTRANSPOSON, SADHU5-1  gene SADHU5-1  function Member of Sadhu non-coding retrotransposon family  note Transposable element gene  
At4g01530	chr4:000663408	0.0	W/663408-665102	AT4G01530.1  mRNA_TE_gene  pseudo  gene_syn F11O4.8, F11O4_8  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G26860.1); similar to 52O08_2 [Brassica rapa subsp. pekinensis] (GB:AAZ67547.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446)  
At4g01533	chr4:000667148	0.0	C/667148-669073	AT4G01533.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G01533.1  
At4g01535	chr4:000669339	0.0	W/669339-669511,669590-669830	AT4G01535.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G01535.1p  transcript_id AT4G01535.1  protein_id AT4G01535.1p  transcript_id AT4G01535.1  
At4g01540	chr4:000672473	0.0	C/672473-672629,672097-672368,671619-671744,671034-671537,670483-670695	AT4G01540.2  CDS  gene_syn ANAC068, F11O4.4, F11O4_4, NAC WITH TRANSMEMBRANE MOTIF1, NTM1  gene NTM1  function Encodes a membrane-bound NAC (for NAM, ATAF1/2, CUC2) transcription factor, designated NTM1 (for NAC with transmembrane motif1). NTM1 regulates cell division in Arabidopsis.  go_component nucleus|GO:0005634|17098812|IDA  go_component endoplasmic reticulum membrane|GO:0005789|17098812|IDA  go_component nuclear membrane|GO:0031965|17098812|IDA  go_process multicellular organismal development|GO:0007275||ISS  go_process cytokinin mediated signaling|GO:0009736|17098812|IMP  go_process leaf morphogenesis|GO:0009965|17098812|IMP  go_process cell division|GO:0051301|17098812|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|17098812|IEP  product NTM1 (NAC WITH TRANSMEMBRANE MOTIF1); transcription activator/ transcription factor  note NAC WITH TRANSMEMBRANE MOTIF1 (NTM1); FUNCTIONS IN: transcription factor activity, transcription activator activity; INVOLVED IN: multicellular organismal development, cytokinin mediated signaling, cell division, leaf morphogenesis; LOCATED IN: nuclear membrane, nucleus, endoplasmic reticulum membrane; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac067 (Arabidopsis NAC domain containing protein 67); transcription factor (TAIR:AT4G01520.1); Has 1426 Blast hits to 1424 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1426; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G01540.2p  transcript_id AT4G01540.2  protein_id AT4G01540.2p  transcript_id AT4G01540.2  
At4g01540	chr4:000672473	0.0	C/672473-672629,672097-672368,671619-671744,671034-671537,670802-670951,670483-670695	AT4G01540.1  CDS  gene_syn ANAC068, F11O4.4, F11O4_4, NAC WITH TRANSMEMBRANE MOTIF1, NTM1  gene NTM1  function Encodes a membrane-bound NAC (for NAM, ATAF1/2, CUC2) transcription factor, designated NTM1 (for NAC with transmembrane motif1). NTM1 regulates cell division in Arabidopsis.  go_component nucleus|GO:0005634|17098812|IDA  go_component endoplasmic reticulum membrane|GO:0005789|17098812|IDA  go_component nuclear membrane|GO:0031965|17098812|IDA  go_process multicellular organismal development|GO:0007275||ISS  go_process cytokinin mediated signaling|GO:0009736|17098812|IMP  go_process leaf morphogenesis|GO:0009965|17098812|IMP  go_process cell division|GO:0051301|17098812|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|17098812|IEP  product NTM1 (NAC WITH TRANSMEMBRANE MOTIF1); transcription activator/ transcription factor  note NAC WITH TRANSMEMBRANE MOTIF1 (NTM1); FUNCTIONS IN: transcription factor activity, transcription activator activity; INVOLVED IN: multicellular organismal development, cytokinin mediated signaling, cell division, leaf morphogenesis; LOCATED IN: nuclear membrane, nucleus, endoplasmic reticulum membrane; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac067 (Arabidopsis NAC domain containing protein 67); transcription factor (TAIR:AT4G01520.1); Has 1434 Blast hits to 1426 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1432; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G01540.1p  transcript_id AT4G01540.1  protein_id AT4G01540.1p  transcript_id AT4G01540.1  
At4g01550	chr4:000675720	0.0	C/675720-675758,675073-675213,674627-674998,674361-674546,674025-674273	AT4G01550.2  CDS  gene_syn Arabidopsis NAC domain containing protein 69, F11O4.5, F11O4_5, anac069  gene anac069  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac069 (Arabidopsis NAC domain containing protein 69); transcription factor  note Arabidopsis NAC domain containing protein 69 (anac069); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: NTM1 (NAC WITH TRANSMEMBRANE MOTIF1); transcription activator/ transcription factor (TAIR:AT4G01540.1); Has 32 Blast hits to 32 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G01550.2p  transcript_id AT4G01550.2  protein_id AT4G01550.2p  transcript_id AT4G01550.2  
At4g01550	chr4:000676072	0.0	C/676072-676225,675720-675991,675073-675213,674627-674998,674361-674546,674025-674273	AT4G01550.1  CDS  gene_syn Arabidopsis NAC domain containing protein 69, F11O4.5, F11O4_5, anac069  gene anac069  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac069 (Arabidopsis NAC domain containing protein 69); transcription factor  note Arabidopsis NAC domain containing protein 69 (anac069); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NTM1 (NAC WITH TRANSMEMBRANE MOTIF1); transcription activator/ transcription factor (TAIR:AT4G01540.1); Has 1433 Blast hits to 1425 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1431; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G01550.1p  transcript_id AT4G01550.1  protein_id AT4G01550.1p  transcript_id AT4G01550.1  
At4g01560	chr4:000678925	0.0	C/678925-679164,678755-678835,678572-678667,678396-678479,678238-678307,678076-678158,677916-677995,677736-677834,677578-677647,677413-677502,677266-677304	AT4G01560.1  CDS  gene_syn F11O4.6, F11O4_6, MEE49, maternal effect embryo arrest 49  gene MEE49  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function molecular_function|GO:0003674||ND  product MEE49 (maternal effect embryo arrest 49)  note maternal effect embryo arrest 49 (MEE49); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); BEST Arabidopsis thaliana protein match is: IMP4 (TAIR:AT1G63780.1); Has 636 Blast hits to 628 proteins in 164 species: Archae - 2; Bacteria - 0; Metazoa - 218; Fungi - 225; Plants - 59; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).  protein_id AT4G01560.1p  transcript_id AT4G01560.1  protein_id AT4G01560.1p  transcript_id AT4G01560.1  
At4g01570	chr4:000679487	0.0	W/679487-681904	AT4G01570.1  CDS  gene_syn T15B16.21, T15B16_21  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G62910.1); Has 25223 Blast hits to 5430 proteins in 165 species: Archae - 8; Bacteria - 10; Metazoa - 231; Fungi - 283; Plants - 23698; Viruses - 0; Other Eukaryotes - 993 (source: NCBI BLink).  protein_id AT4G01570.1p  transcript_id AT4G01570.1  protein_id AT4G01570.1p  transcript_id AT4G01570.1  
At4g01575	chr4:000682040	0.0	C/682040-682474	AT4G01575.1  CDS  gene_syn T15B16.19, T15B16_19  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function serine-type endopeptidase inhibitor activity|GO:0004867||ISS  product serine protease inhibitor, Kazal-type family protein  note serine protease inhibitor, Kazal-type family protein; FUNCTIONS IN: serine-type endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I1, Kazal (InterPro:IPR002350); BEST Arabidopsis thaliana protein match is: serine protease inhibitor, Kazal-type family protein (TAIR:AT3G61980.1); Has 23 Blast hits to 23 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G01575.1p  transcript_id AT4G01575.1  protein_id AT4G01575.1p  transcript_id AT4G01575.1  
At4g01580	chr4:000685791	0.0	W/685791-685922,686156-686534,686607-686668	AT4G01580.1  CDS  gene_syn T15B16.18, T15B16_18  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcriptional factor B3 family protein  note transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT3G18960.1); Has 221 Blast hits to 202 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 221; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G01580.1p  transcript_id AT4G01580.1  protein_id AT4G01580.1p  transcript_id AT4G01580.1  
At4g01590	chr4:000689985	0.0	C/689985-690192,689778-689906,689638-689691,689515-689561,689342-689434,689185-689236,689077-689093	AT4G01590.2  CDS  gene_syn T15B16.1, T15B16_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35680.1); Has 2441 Blast hits to 1620 proteins in 153 species: Archae - 2; Bacteria - 115; Metazoa - 896; Fungi - 326; Plants - 108; Viruses - 80; Other Eukaryotes - 914 (source: NCBI BLink).  protein_id AT4G01590.2p  transcript_id AT4G01590.2  protein_id AT4G01590.2p  transcript_id AT4G01590.2  
At4g01590	chr4:000689985	0.0	C/689985-690192,689778-689906,689638-689691,689515-689561,689342-689434,689185-689236,689077-689096	AT4G01590.1  CDS  gene_syn T15B16.1, T15B16_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35680.1); Has 2034 Blast hits to 1379 proteins in 150 species: Archae - 0; Bacteria - 99; Metazoa - 666; Fungi - 320; Plants - 99; Viruses - 74; Other Eukaryotes - 776 (source: NCBI BLink).  protein_id AT4G01590.1p  transcript_id AT4G01590.1  protein_id AT4G01590.1p  transcript_id AT4G01590.1  
At4g01593	chr4:000690710	0.0	W/690710-692169	AT4G01593.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT4G01595  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G01593.1  
At4g01593	chr4:000690873	0.0	W/690873-691713	AT4G01593.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT4G01595  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G01593.2  
At4g01595	chr4:000691852	0.0	C/691852-691908,691626-691775,691391-691537,690980-691048	AT4G01595.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function MAP kinase activity|GO:0004707||ISS  product ATP binding / MAP kinase/ protein kinase  note ATP binding / MAP kinase/ protein kinase; FUNCTIONS IN: MAP kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATMPK18; MAP kinase (TAIR:AT1G53510.1); Has 9933 Blast hits to 9929 proteins in 430 species: Archae - 0; Bacteria - 0; Metazoa - 5053; Fungi - 1558; Plants - 1493; Viruses - 3; Other Eukaryotes - 1826 (source: NCBI BLink).  protein_id AT4G01595.1p  transcript_id AT4G01595.1  protein_id AT4G01595.1p  transcript_id AT4G01595.1  
At4g01600	chr4:000693210	0.0	W/693210-693339,693414-693500,693613-693890,694128-694319	AT4G01600.2  CDS  gene_syn T15B16.24, T15B16_24  go_function molecular_function|GO:0003674||ND  product GRAM domain-containing protein / ABA-responsive protein-related  note GRAM domain-containing protein / ABA-responsive protein-related; FUNCTIONS IN: molecular_function unknown; CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182); BEST Arabidopsis thaliana protein match is: GEM (GL2-EXPRESSION MODULATOR) (TAIR:AT2G22475.1); Has 194 Blast hits to 194 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 194; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G01600.2p  transcript_id AT4G01600.2  protein_id AT4G01600.2p  transcript_id AT4G01600.2  
At4g01600	chr4:000693210	0.0	W/693210-693339,693414-693515,693613-693890,694128-694319	AT4G01600.1  CDS  gene_syn T15B16.24, T15B16_24  go_function molecular_function|GO:0003674||ND  product GRAM domain-containing protein / ABA-responsive protein-related  note GRAM domain-containing protein / ABA-responsive protein-related; FUNCTIONS IN: molecular_function unknown; CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182); BEST Arabidopsis thaliana protein match is: GEM (GL2-EXPRESSION MODULATOR) (TAIR:AT2G22475.1); Has 195 Blast hits to 195 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 195; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G01600.1p  transcript_id AT4G01600.1  protein_id AT4G01600.1p  transcript_id AT4G01600.1  
At4g01610	chr4:000694857	0.0	W/694857-694934,695130-695183,695267-695347,695438-695594,695701-695705,695795-695869,695957-696082,696172-696390,696470-696583,696679-696714,696803-696937	AT4G01610.1  CDS  gene_syn T15B16.17, T15B16_17  go_component vacuole|GO:0005773|15539469|IDA  go_process proteolysis|GO:0006508||IEA  go_process regulation of catalytic activity|GO:0050790||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product cathepsin B-like cysteine protease, putative  note cathepsin B-like cysteine protease, putative; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis, regulation of catalytic activity; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Peptidase C1A, cathepsin B (InterPro:IPR015643), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169), Peptidase C1A, propeptide (InterPro:IPR012599); BEST Arabidopsis thaliana protein match is: cathepsin B-like cysteine protease, putative (TAIR:AT1G02305.1); Has 5937 Blast hits to 5913 proteins in 579 species: Archae - 35; Bacteria - 71; Metazoa - 2792; Fungi - 4; Plants - 1131; Viruses - 129; Other Eukaryotes - 1775 (source: NCBI BLink).  protein_id AT4G01610.1p  transcript_id AT4G01610.1  protein_id AT4G01610.1p  transcript_id AT4G01610.1  
At4g01610	chr4:000694857	0.0	W/694857-694934,695130-695183,695267-695347,695438-695599,695795-695869,695957-696082,696172-696390,696470-696583,696679-696714,696803-696937	AT4G01610.2  CDS  gene_syn T15B16.17, T15B16_17  go_component vacuole|GO:0005773|15539469|IDA  go_process proteolysis|GO:0006508||IEA  go_process regulation of catalytic activity|GO:0050790||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product cathepsin B-like cysteine protease, putative  note cathepsin B-like cysteine protease, putative; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis, regulation of catalytic activity; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Peptidase C1A, cathepsin B (InterPro:IPR015643), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169), Peptidase C1A, propeptide (InterPro:IPR012599); BEST Arabidopsis thaliana protein match is: cathepsin B-like cysteine protease, putative (TAIR:AT1G02305.1); Has 5870 Blast hits to 5847 proteins in 575 species: Archae - 33; Bacteria - 71; Metazoa - 2782; Fungi - 4; Plants - 1101; Viruses - 129; Other Eukaryotes - 1750 (source: NCBI BLink).  protein_id AT4G01610.2p  transcript_id AT4G01610.2  protein_id AT4G01610.2p  transcript_id AT4G01610.2  
At4g01630	chr4:000700653	0.0	W/700653-700788,700896-701527	AT4G01630.1  CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN A17, ATEXP17, ATEXPA17, ATHEXP ALPHA 1.13, EXPANSIN 17, T15B16.16, T15B16_16  gene ATEXPA17  function member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828||ISS  go_process plant-type cell wall modification during multidimensional cell growth|GO:0009831||ISS  product ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17)  note ARABIDOPSIS THALIANA EXPANSIN A17 (ATEXPA17); INVOLVED IN: plant-type cell wall modification during multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11) (TAIR:AT1G20190.1); Has 1423 Blast hits to 1422 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 19; Plants - 1370; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT4G01630.1p  transcript_id AT4G01630.1  protein_id AT4G01630.1p  transcript_id AT4G01630.1  
At4g01640	chr4:000702563	0.0	W/702563-702624,702760-703600	AT4G01640.1  CDS  gene_syn T15B16.15, T15B16_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: S locus F-box-related / SLF-related (TAIR:AT2G34280.1); Has 151 Blast hits to 146 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G01640.1p  transcript_id AT4G01640.1  protein_id AT4G01640.1p  transcript_id AT4G01640.1  
At4g01650	chr4:000705375	0.0	C/705375-705866,704860-705027,704578-704784	AT4G01650.1  CDS  gene_syn T15B16.3, T15B16_3  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08720.1); Has 322 Blast hits to 309 proteins in 56 species: Archae - 0; Bacteria - 121; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink).  protein_id AT4G01650.1p  transcript_id AT4G01650.1  protein_id AT4G01650.1p  transcript_id AT4G01650.1  
At4g01650	chr4:000706895	0.0	C/706895-706931,705375-705598,704860-705027,704578-704784	AT4G01650.2  CDS  gene_syn T15B16.3, T15B16_3  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08720.1); Has 322 Blast hits to 309 proteins in 56 species: Archae - 0; Bacteria - 121; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink).  protein_id AT4G01650.2p  transcript_id AT4G01650.2  protein_id AT4G01650.2p  transcript_id AT4G01650.2  
At4g01660	chr4:000708652	0.0	W/708652-709196,709283-709508,709581-709733,709838-709996,710137-710296,710381-710607,710694-711095	AT4G01660.1  CDS  gene_syn ARABIDOPSIS THALIANA ABC TRANSPORTER 1, ATABC1, ATATH10, T15B16.14, T15B16_14  gene ATABC1  function Encodes an ABC1-like protein, member of the ATH subfamily; putative ABC transporter; isolated by functional complementation of a yeast abc1 mutant  go_component mitochondrial respiratory chain|GO:0005746|9852956|IGI  go_process cytochrome complex assembly|GO:0017004|9852956|IGI  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  product ATABC1 (ARABIDOPSIS THALIANA ABC TRANSPORTER 1); transporter  note ARABIDOPSIS THALIANA ABC TRANSPORTER 1 (ATABC1); FUNCTIONS IN: transporter activity; INVOLVED IN: cytochrome complex assembly; LOCATED IN: mitochondrial respiratory chain; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATATH13; transporter (TAIR:AT5G64940.2); Has 6123 Blast hits to 6121 proteins in 1088 species: Archae - 67; Bacteria - 2596; Metazoa - 330; Fungi - 263; Plants - 330; Viruses - 7; Other Eukaryotes - 2530 (source: NCBI BLink).  protein_id AT4G01660.1p  transcript_id AT4G01660.1  protein_id AT4G01660.1p  transcript_id AT4G01660.1  
At4g01670	chr4:000711860	0.0	C/711860-712511,711464-711561	AT4G01670.1  CDS  gene_syn T15B16.23, T15B16_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62070.1); Has 76 Blast hits to 75 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G01670.1p  transcript_id AT4G01670.1  protein_id AT4G01670.1p  transcript_id AT4G01670.1  
At4g01671	chr4:000713216	0.0	C/713216-713389	AT4G01671.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G01671.1p  transcript_id AT4G01671.1  protein_id AT4G01671.1p  transcript_id AT4G01671.1  
At4g01680	chr4:000717247	0.0	C/717247-717415,717066-717195,716222-716969	AT4G01680.2  CDS  gene_syn AtMYB55, MYB55, T15B16.4, T15B16_4, myb domain protein 55  gene MYB55  function Encodes a putative transcription factor (MYB55).  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB55 (myb domain protein 55); DNA binding / transcription factor  note myb domain protein 55 (MYB55); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: petal, inflorescence meristem, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB61 (MYB DOMAIN PROTEIN 61); DNA binding / transcription factor (TAIR:AT1G09540.1); Has 6168 Blast hits to 5745 proteins in 350 species: Archae - 0; Bacteria - 0; Metazoa - 622; Fungi - 275; Plants - 3751; Viruses - 5; Other Eukaryotes - 1515 (source: NCBI BLink).  protein_id AT4G01680.2p  transcript_id AT4G01680.2  protein_id AT4G01680.2p  transcript_id AT4G01680.2  
At4g01680	chr4:000717283	0.0	C/717283-717415,717066-717195,716222-716969	AT4G01680.1  CDS  gene_syn AtMYB55, MYB55, T15B16.4, T15B16_4, myb domain protein 55  gene MYB55  function Encodes a putative transcription factor (MYB55).  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB55 (myb domain protein 55); DNA binding / transcription factor  note myb domain protein 55 (MYB55); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: petal, inflorescence meristem, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB61 (MYB DOMAIN PROTEIN 61); DNA binding / transcription factor (TAIR:AT1G09540.1); Has 6344 Blast hits to 5850 proteins in 352 species: Archae - 0; Bacteria - 0; Metazoa - 645; Fungi - 319; Plants - 3772; Viruses - 3; Other Eukaryotes - 1605 (source: NCBI BLink).  protein_id AT4G01680.1p  transcript_id AT4G01680.1  protein_id AT4G01680.1p  transcript_id AT4G01680.1  
At4g01680	chr4:000717283	0.0	C/717283-717415,717066-717195,716570-716969,716401-716463	AT4G01680.3  CDS  gene_syn AtMYB55, MYB55, T15B16.4, T15B16_4, myb domain protein 55  gene MYB55  function Encodes a putative transcription factor (MYB55).  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB55 (myb domain protein 55); DNA binding / transcription factor  note myb domain protein 55 (MYB55); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: petal, inflorescence meristem, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: AtMYB50 (myb domain protein 50); DNA binding / transcription factor (TAIR:AT1G57560.1); Has 6086 Blast hits to 5855 proteins in 352 species: Archae - 0; Bacteria - 0; Metazoa - 493; Fungi - 317; Plants - 3728; Viruses - 3; Other Eukaryotes - 1545 (source: NCBI BLink).  protein_id AT4G01680.3p  transcript_id AT4G01680.3  protein_id AT4G01680.3p  transcript_id AT4G01680.3  
At4g01690	chr4:000729929	0.0	W/729929-730306,730407-730592,730688-730772,730897-731044,731130-731210,731297-731468,731567-731726,731806-731909,732010-732033,732127-732309	AT4G01690.2  CDS  gene_syn HEMG1, PPO1, PPOX, PROTOPORPHYRINOGEN OXIDASE  gene PPOX  function Encodes protoporphyrinogen oxidase (PPOX).  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process porphyrin biosynthetic process|GO:0006779|8982084|TAS  go_function protoporphyrinogen oxidase activity|GO:0004729|8982084|IGI  product PPOX; protoporphyrinogen oxidase  note PPOX; FUNCTIONS IN: protoporphyrinogen oxidase activity; INVOLVED IN: porphyrin biosynthetic process; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), Protoporphyrinogen oxidase (InterPro:IPR004572); BEST Arabidopsis thaliana protein match is: HEMG2; electron carrier/ oxidoreductase/ protoporphyrinogen oxidase (TAIR:AT5G14220.1); Has 1313 Blast hits to 1313 proteins in 389 species: Archae - 0; Bacteria - 646; Metazoa - 187; Fungi - 85; Plants - 102; Viruses - 0; Other Eukaryotes - 293 (source: NCBI BLink).  protein_id AT4G01690.2p  transcript_id AT4G01690.2  protein_id AT4G01690.2p  transcript_id AT4G01690.2  
At4g01690	chr4:000729929	0.0	W/729929-730306,730407-730592,730688-730772,730897-731044,731130-731210,731297-731468,731567-731726,731806-731909,732010-732309	AT4G01690.1  CDS  gene_syn HEMG1, PPO1, PPOX, PROTOPORPHYRINOGEN OXIDASE  gene PPOX  function Encodes protoporphyrinogen oxidase (PPOX).  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process porphyrin biosynthetic process|GO:0006779|8982084|TAS  go_function protoporphyrinogen oxidase activity|GO:0004729|8982084|IGI  product PPOX; protoporphyrinogen oxidase  note PPOX; FUNCTIONS IN: protoporphyrinogen oxidase activity; INVOLVED IN: porphyrin biosynthetic process; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), Protoporphyrinogen oxidase (InterPro:IPR004572); BEST Arabidopsis thaliana protein match is: HEMG2; electron carrier/ oxidoreductase/ protoporphyrinogen oxidase (TAIR:AT5G14220.1); Has 1355 Blast hits to 1344 proteins in 390 species: Archae - 0; Bacteria - 648; Metazoa - 190; Fungi - 87; Plants - 102; Viruses - 0; Other Eukaryotes - 328 (source: NCBI BLink).  protein_id AT4G01690.1p  transcript_id AT4G01690.1  protein_id AT4G01690.1p  transcript_id AT4G01690.1  
At4g01700	chr4:000733015	0.0	C/733015-733487,732413-732782	AT4G01700.1  CDS  gene_syn T15B16.5, T15B16_5  go_component cell wall|GO:0005618|14595688|IDA  go_process cell wall macromolecule catabolic process|GO:0016998||IEA  go_function chitinase activity|GO:0004568||IEA  go_function chitinase activity|GO:0004568||ISS  product chitinase, putative  note chitinase, putative; FUNCTIONS IN: chitinase activity; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 19 (InterPro:IPR016283), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: chitinase, putative (TAIR:AT1G02360.1); Has 1469 Blast hits to 1463 proteins in 349 species: Archae - 0; Bacteria - 354; Metazoa - 35; Fungi - 2; Plants - 989; Viruses - 19; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT4G01700.1p  transcript_id AT4G01700.1  protein_id AT4G01700.1p  transcript_id AT4G01700.1  
At4g01703	chr4:000734252	0.0	C/734252-734365	AT4G01703.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G01703.1p  transcript_id AT4G01703.1  protein_id AT4G01703.1p  transcript_id AT4G01703.1  
At4g01710	chr4:000735776	0.0	W/735776-735864,735947-736019,736090-736190,736315-736450	AT4G01710.1  CDS  gene_syn ARPC5, CRK, CROOKED, T15B16.22, T15B16_22  gene CRK  function belongs to the DIS(distorted) gene family. Encodes a actin polymerization factor. Involved in cell expansion of trichome.  go_component Arp2/3 protein complex|GO:0005885|12783786|TAS  go_component Arp2/3 protein complex|GO:0005885|15653407|TAS  go_process actin filament organization|GO:0007015|10572033|TAS  go_process multidimensional cell growth|GO:0009825|12783786|IMP  go_process trichome morphogenesis|GO:0010090|12690443|IMP  go_process actin cytoskeleton organization|GO:0030036|12783786|IMP  go_process actin filament polymerization|GO:0030041|12783786|IMP  go_function actin binding|GO:0003779|12783786|TAS  product CRK (CROOKED); actin binding  note CROOKED (CRK); FUNCTIONS IN: actin binding; INVOLVED IN: multidimensional cell growth, actin filament organization, actin filament polymerization, trichome morphogenesis, actin cytoskeleton organization; LOCATED IN: Arp2/3 protein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ARP2/3 complex 16 kDa subunit (p16-Arc) (InterPro:IPR006789); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65274.1); Has 278 Blast hits to 278 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 214; Fungi - 39; Plants - 19; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G01710.1p  transcript_id AT4G01710.1  protein_id AT4G01710.1p  transcript_id AT4G01710.1  
At4g01720	chr4:000744949	0.0	W/744949-745170,745253-745324,745716-745874,746685-746942,747038-747151,747575-748219	AT4G01720.1  CDS  gene_syn AtWRKY47, T15B16.12, T15B16_12, WRKY47  gene WRKY47  function member of WRKY Transcription Factor; Group II-b  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY47; transcription factor  note WRKY47; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY42; transcription factor (TAIR:AT4G04450.1); Has 2122 Blast hits to 1829 proteins in 130 species: Archae - 2; Bacteria - 4; Metazoa - 45; Fungi - 10; Plants - 2004; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT4G01720.1p  transcript_id AT4G01720.1  protein_id AT4G01720.1p  transcript_id AT4G01720.1  
At4g01730	chr4:000749574	0.0	W/749574-749621,749943-750056,750160-750495,750591-750659,750748-750819,750911-751039,751129-751209,751279-751449,751528-752034	AT4G01730.1  CDS  gene_syn T15B16.11, T15B16_11  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: zinc finger (DHHC type) family protein (TAIR:AT2G33640.1); Has 3751 Blast hits to 3746 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 1867; Fungi - 455; Plants - 406; Viruses - 0; Other Eukaryotes - 1023 (source: NCBI BLink).  protein_id AT4G01730.1p  transcript_id AT4G01730.1  protein_id AT4G01730.1p  transcript_id AT4G01730.1  
At4g01735	chr4:000752780	0.0	C/752780-752873,752288-752754	AT4G01735.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 21 Blast hits to 21 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 2; Plants - 0; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT4G01735.1p  transcript_id AT4G01735.1  protein_id AT4G01735.1p  transcript_id AT4G01735.1  
At4g01740	chr4:000753422	0.0	W/753422-753824,753901-755456	AT4G01740.1  CDS  gene_syn T15B16.10, T15B16_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, embryo, hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT4G01930.1); Has 1122 Blast hits to 471 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 1116; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G01740.1p  transcript_id AT4G01740.1  protein_id AT4G01740.1p  transcript_id AT4G01740.1  
At4g01750	chr4:000756534	0.0	W/756534-757040,757582-757743,757824-758045,758152-758364	AT4G01750.1  CDS  gene_syn RGXT2, T7B11.1, rhamnogalacturonan xylosyltransferase 2  gene RGXT2  function Encodes a protein with UDP-xylose-dependent xylosyltransferase activity, which transfers Xyl onto L-fucose and (albeit less efficiently) L-arabinose. The linkage to L-fucose was shown to be preferentially to the <i>O</i>-4 position. Analysis of mutant containing T-DNA insertion in this gene indicate that the RGXT2 protein might be involved in the synthesis of the &alpha;-D-Xyl-(1,3)-&alpha;-L-Fuc-(1,4)-L-Rha structure in pectic rhamnogalacturonan II.  go_component Golgi apparatus|GO:0005794|17056709|IDA  go_process rhamnogalacturonan II biosynthetic process|GO:0010306|17056709|IMP  go_function UDP-xylosyltransferase activity|GO:0035252|17056709|IDA  product RGXT2 (rhamnogalacturonan xylosyltransferase 2); UDP-xylosyltransferase  note rhamnogalacturonan xylosyltransferase 2 (RGXT2); FUNCTIONS IN: UDP-xylosyltransferase activity; INVOLVED IN: rhamnogalacturonan II biosynthetic process; LOCATED IN: Golgi apparatus; EXPRESSED IN: stem, rosette leaf, flower, root; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: RGXT1 (rhamnogalacturonan xylosyltransferase 1); UDP-xylosyltransferase (TAIR:AT4G01770.1); Has 174 Blast hits to 171 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT4G01750.1p  transcript_id AT4G01750.1  protein_id AT4G01750.1p  transcript_id AT4G01750.1  
At4g01760	chr4:000759131	0.0	C/759131-761134	AT4G01760.1  CDS  gene_syn T7B11.2  go_process intracellular signaling cascade|GO:0007242||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular signaling cascade; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT4G01910.1); Has 1391 Blast hits to 497 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 21; Fungi - 0; Plants - 1357; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT4G01760.1p  transcript_id AT4G01760.1  protein_id AT4G01760.1p  transcript_id AT4G01760.1  
At4g01770	chr4:000764564	0.0	W/764564-765052,765802-765963,766041-766262,766384-766596	AT4G01770.1  CDS  gene_syn RGXT1, T15B16.8, T15B16_8, rhamnogalacturonan xylosyltransferase 1  gene RGXT1  function Encodes a protein with UDP-xylose-dependent xylosyltransferase activity, which transfers Xyl onto L-fucose and (albeit less efficiently) L-arabinose. The linkage to L-fucose was shown to be preferentially to the <i>O</i>-4 position. Analysis of mutant containing T-DNA insertion in this gene indicate that the RGXT1 protein might be involved in the synthesis of the &alpha;-D-Xyl-(1,3)-&alpha;-L-Fuc-(1,4)-L-Rha structure in pectic rhamnogalacturonan II.  go_component Golgi apparatus|GO:0005794|17056709|IDA  go_process rhamnogalacturonan II biosynthetic process|GO:0010306|17056709|IMP  go_function UDP-xylosyltransferase activity|GO:0035252|17056709|IDA  product RGXT1 (rhamnogalacturonan xylosyltransferase 1); UDP-xylosyltransferase  note rhamnogalacturonan xylosyltransferase 1 (RGXT1); FUNCTIONS IN: UDP-xylosyltransferase activity; INVOLVED IN: rhamnogalacturonan II biosynthetic process; LOCATED IN: Golgi apparatus; EXPRESSED IN: rosette leaf, root; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: RGXT2 (rhamnogalacturonan xylosyltransferase 2); UDP-xylosyltransferase (TAIR:AT4G01750.1); Has 155 Blast hits to 152 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT4G01770.1p  transcript_id AT4G01770.1  protein_id AT4G01770.1p  transcript_id AT4G01770.1  
At4g01780	chr4:000767310	0.0	W/767310-767326,767413-767855,768043-768254,768327-768614,768744-768917,769010-769246	AT4G01780.1  CDS  gene_syn T7B11.4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product XH/XS domain-containing protein  note XH/XS domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Region of unknown function XS (InterPro:IPR005380), Region of unknown function XH (InterPro:IPR005379); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein / XS zinc finger domain-containing protein (TAIR:AT3G48670.2); Has 2987 Blast hits to 2423 proteins in 280 species: Archae - 63; Bacteria - 198; Metazoa - 1134; Fungi - 118; Plants - 211; Viruses - 11; Other Eukaryotes - 1252 (source: NCBI BLink).  protein_id AT4G01780.1p  transcript_id AT4G01780.1  protein_id AT4G01780.1p  transcript_id AT4G01780.1  
At4g01790	chr4:000769868	0.0	W/769868-769938,770050-770097,770181-770241,770326-770424,770504-770728	AT4G01790.1  CDS  gene_syn T7B11.5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ribonuclease P activity|GO:0004526||ISS  product ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein / ribonuclease P-related  note ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein / ribonuclease P-related; FUNCTIONS IN: ribonuclease P activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038); Has 68 Blast hits to 68 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 50; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G01790.1p  transcript_id AT4G01790.1  protein_id AT4G01790.1p  transcript_id AT4G01790.1  
At4g01800	chr4:000775715	0.0	C/775715-776131,775566-775638,775267-775473,775065-775168,774794-774973,774471-774689,774202-774315,774017-774130,773591-773758,773194-773369,772933-772999,772699-772845,772523-772618,772372-772440,772170-772271,771843-772094,771680-771747,771475-771592,771147-771386,770926-771063	AT4G01800.1  CDS  gene_syn T7B11.6, T7B11_6  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process protein targeting|GO:0006605||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process protein import|GO:0017038||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein targeting|GO:0006605||ISS  go_process intracellular protein transport|GO:0006886||ISS  go_function ATP binding|GO:0005524||ISS  product preprotein translocase secA subunit, putative  note preprotein translocase secA subunit, putative; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: intracellular protein transport, protein targeting, protein import; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SecA Wing and Scaffold (InterPro:IPR011116), SecA preprotein cross-linking region (InterPro:IPR011130), SecA DEAD-like (InterPro:IPR011115), SecA motor DEAD (InterPro:IPR014018), SecA protein (InterPro:IPR000185); BEST Arabidopsis thaliana protein match is: ATP binding / protein binding (TAIR:AT1G21650.1); Has 15109 Blast hits to 10309 proteins in 1586 species: Archae - 2; Bacteria - 6696; Metazoa - 44; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 8307 (source: NCBI BLink).  protein_id AT4G01800.1p  transcript_id AT4G01800.1  protein_id AT4G01800.1p  transcript_id AT4G01800.1  
At4g01810	chr4:000779308	0.0	C/779308-779802,777390-779210,777193-777309,776979-777050,776734-776871	AT4G01810.1  CDS  gene_syn T7B11.7, T7B11_7  go_component COPII vesicle coat|GO:0030127||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process ER to Golgi vesicle-mediated transport|GO:0006888||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein transport protein-related  note protein transport protein-related; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular protein transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24 helical region (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24 trunk region (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895); BEST Arabidopsis thaliana protein match is: transport protein, putative (TAIR:AT2G21630.1); Has 7526 Blast hits to 4938 proteins in 507 species: Archae - 16; Bacteria - 861; Metazoa - 2084; Fungi - 961; Plants - 2123; Viruses - 449; Other Eukaryotes - 1032 (source: NCBI BLink).  protein_id AT4G01810.1p  transcript_id AT4G01810.1  protein_id AT4G01810.1p  transcript_id AT4G01810.1  
At4g01820	chr4:000785126	0.0	C/785126-785329,784981-785035,784723-784898,784424-784645,784118-784356,783237-784036,782349-783160,781966-782232,781633-781896,781184-781480,780734-781087	AT4G01820.1  CDS  gene_syn MDR3, P-GLYCOPROTEIN 3, PGP3, T7B11.8, T7B11_8  gene PGP3  function member of MDR subfamily  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|11346655|ISS  product PGP3 (P-GLYCOPROTEIN 3); ATPase, coupled to transmembrane movement of substances  note P-GLYCOPROTEIN 3 (PGP3); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PGP5 (P-GLYCOPROTEIN 5); ATPase, coupled to transmembrane movement of substances (TAIR:AT4G01830.1); Has 496173 Blast hits to 233030 proteins in 2690 species: Archae - 8794; Bacteria - 334480; Metazoa - 15248; Fungi - 8006; Plants - 4652; Viruses - 33; Other Eukaryotes - 124960 (source: NCBI BLink).  protein_id AT4G01820.1p  transcript_id AT4G01820.1  protein_id AT4G01820.1p  transcript_id AT4G01820.1  
At4g01830	chr4:000790229	0.0	C/790229-790447,790089-790143,789838-790013,789535-789756,789199-789437,788311-789110,787442-788241,786940-787206,786606-786869,786125-786421,785683-786036	AT4G01830.1  CDS  gene_syn P-GLYCOPROTEIN 5, PGP5, T7B11.9, T7B11_9  gene PGP5  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product PGP5 (P-GLYCOPROTEIN 5); ATPase, coupled to transmembrane movement of substances  note P-GLYCOPROTEIN 5 (PGP5); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PGP3 (P-GLYCOPROTEIN 3); ATPase, coupled to transmembrane movement of substances (TAIR:AT4G01820.1); Has 500108 Blast hits to 234234 proteins in 2684 species: Archae - 8852; Bacteria - 336119; Metazoa - 15463; Fungi - 8261; Plants - 4710; Viruses - 31; Other Eukaryotes - 126672 (source: NCBI BLink).  protein_id AT4G01830.1p  transcript_id AT4G01830.1  protein_id AT4G01830.1p  transcript_id AT4G01830.1  
At4g01840	chr4:000793403	0.0	W/793403-794481,794786-794933	AT4G01840.1  CDS  gene_syn ATKCO5, ATTPK5, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 5, KCO5, T7B11.10, T7B11_10, TPK5  gene KCO5  function Encodes AtTPK5, a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins. AtTPK5 is targeted to the vacuolar membrane. May form homomeric ion channels in vivo.  go_process potassium ion transport|GO:0006813||IEA  go_component plant-type vacuole membrane|GO:0009705|16984403|IDA  go_function outward rectifier potassium channel activity|GO:0015271||ISS  product KCO5 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 5); outward rectifier potassium channel  note CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 5 (KCO5); FUNCTIONS IN: outward rectifier potassium channel activity; INVOLVED IN: potassium ion transport; LOCATED IN: plant-type vacuole membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Potassium channel, two pore-domain (InterPro:IPR003280), EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Ion transport 2 (InterPro:IPR013099); BEST Arabidopsis thaliana protein match is: KCO6; outward rectifier potassium channel (TAIR:AT4G18160.1); Has 3366 Blast hits to 3108 proteins in 596 species: Archae - 78; Bacteria - 1146; Metazoa - 1138; Fungi - 131; Plants - 153; Viruses - 0; Other Eukaryotes - 720 (source: NCBI BLink).  protein_id AT4G01840.1p  transcript_id AT4G01840.1  protein_id AT4G01840.1p  transcript_id AT4G01840.1  
At4g01850	chr4:000796298	0.0	C/796298-797479	AT4G01850.1  CDS  gene_syn MAT2, S-ADENOSYLMETHIONINE SYNTHETASE 2, SAM-2, T7B11.11, T7B11_11  gene SAM-2  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_process one-carbon compound metabolic process|GO:0006730||IEA  go_function copper ion binding|GO:0005507|16526091|IDA  go_process S-adenosylmethionine biosynthetic process|GO:0006556||ISS  go_function methionine adenosyltransferase activity|GO:0004478||ISS  product SAM-2 (S-ADENOSYLMETHIONINE SYNTHETASE 2); copper ion binding / methionine adenosyltransferase  note S-ADENOSYLMETHIONINE SYNTHETASE 2 (SAM-2); FUNCTIONS IN: copper ion binding, methionine adenosyltransferase activity; INVOLVED IN: one-carbon compound metabolic process, S-adenosylmethionine biosynthetic process; LOCATED IN: nucleolus, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine synthetase (InterPro:IPR002133); BEST Arabidopsis thaliana protein match is: SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1); methionine adenosyltransferase (TAIR:AT1G02500.2); Has 8027 Blast hits to 8026 proteins in 1640 species: Archae - 6; Bacteria - 2999; Metazoa - 309; Fungi - 111; Plants - 502; Viruses - 0; Other Eukaryotes - 4100 (source: NCBI BLink).  protein_id AT4G01850.1p  transcript_id AT4G01850.1  protein_id AT4G01850.1p  transcript_id AT4G01850.1  
At4g01850	chr4:000796298	0.0	C/796298-797479	AT4G01850.2  CDS  gene_syn MAT2, S-ADENOSYLMETHIONINE SYNTHETASE 2, SAM-2, T7B11.11, T7B11_11  gene SAM-2  go_process one-carbon compound metabolic process|GO:0006730||IEA  go_process S-adenosylmethionine biosynthetic process|GO:0006556||ISS  go_function methionine adenosyltransferase activity|GO:0004478||ISS  product SAM-2 (S-ADENOSYLMETHIONINE SYNTHETASE 2); methionine adenosyltransferase  note S-ADENOSYLMETHIONINE SYNTHETASE 2 (SAM-2); FUNCTIONS IN: methionine adenosyltransferase activity; INVOLVED IN: one-carbon compound metabolic process, S-adenosylmethionine biosynthetic process; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine synthetase (InterPro:IPR002133); BEST Arabidopsis thaliana protein match is: SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1); methionine adenosyltransferase (TAIR:AT1G02500.2); Has 8027 Blast hits to 8026 proteins in 1640 species: Archae - 6; Bacteria - 2999; Metazoa - 309; Fungi - 111; Plants - 502; Viruses - 0; Other Eukaryotes - 4100 (source: NCBI BLink).  protein_id AT4G01850.2p  transcript_id AT4G01850.2  protein_id AT4G01850.2p  transcript_id AT4G01850.2  
At4g01860	chr4:000807895	0.0	C/807895-808018,807527-807813,807327-807444,807161-807243,806867-807027,806677-806770,806305-806387,806005-806214,805412-805771,805128-805287,804686-804877,804316-804525,804158-804250,803861-804078,803245-803763,803082-803162,802908-802993,802148-802780,801869-802022,801713-801773	AT4G01860.1  CDS  gene_syn T7B11.12, T7B11_12  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G21540.1); Has 13497 Blast hits to 7940 proteins in 390 species: Archae - 34; Bacteria - 3268; Metazoa - 4828; Fungi - 2519; Plants - 940; Viruses - 0; Other Eukaryotes - 1908 (source: NCBI BLink).  protein_id AT4G01860.1p  transcript_id AT4G01860.1  protein_id AT4G01860.1p  transcript_id AT4G01860.1  
At4g01860	chr4:000807895	0.0	C/807895-808018,807527-807813,807327-807444,807161-807243,806867-807027,806677-806770,806305-806387,806005-806214,805412-805771,805128-805287,804686-804877,804316-804525,804158-804250,803861-804078,803245-803763,803082-803162,802908-802993,802148-802780,801869-802022,801713-801773	AT4G01860.2  CDS  gene_syn T7B11.12, T7B11_12  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G21540.1); Has 13497 Blast hits to 7940 proteins in 390 species: Archae - 34; Bacteria - 3268; Metazoa - 4828; Fungi - 2519; Plants - 940; Viruses - 0; Other Eukaryotes - 1908 (source: NCBI BLink).  protein_id AT4G01860.2p  transcript_id AT4G01860.2  protein_id AT4G01860.2p  transcript_id AT4G01860.2  
At4g01865	chr4:000808270	0.0	C/808270-808342	AT4G01865.1  tRNA  gene_syn 67043.TRNA-PHE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Phe (anticodon: GAA)  transcript_id AT4G01865.1  
At4g01870	chr4:000808473	0.0	C/808473-810431	AT4G01870.1  CDS  gene_syn T7B11.13, T7B11_13  go_component cellular_component|GO:0005575||ND  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function molecular_function|GO:0003674||ND  product tolB protein-related  note tolB protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cyclopentenone; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40-like Beta Propeller (InterPro:IPR011659), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21680.1); Has 4671 Blast hits to 3161 proteins in 698 species: Archae - 22; Bacteria - 2093; Metazoa - 16; Fungi - 28; Plants - 63; Viruses - 0; Other Eukaryotes - 2449 (source: NCBI BLink).  protein_id AT4G01870.1p  transcript_id AT4G01870.1  protein_id AT4G01870.1p  transcript_id AT4G01870.1  
At4g01880	chr4:000812797	0.0	C/812797-812882,812653-812718,812249-812563,811901-812153,811755-811812,811581-811667,811367-811477,811141-811276,810810-811059	AT4G01880.1  CDS  gene_syn T7B11.14, T7B11_14  go_process tRNA processing|GO:0008033||IEA  go_function methyltransferase activity|GO:0008168||IEA  product methyltransferase  note methyltransferase; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: tRNA processing; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase TRM13 (InterPro:IPR007871); Has 242 Blast hits to 229 proteins in 98 species: Archae - 2; Bacteria - 2; Metazoa - 110; Fungi - 38; Plants - 22; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT4G01880.1p  transcript_id AT4G01880.1  protein_id AT4G01880.1p  transcript_id AT4G01880.1  
At4g01883	chr4:000813162	0.0	W/813162-813406,813800-813899,813993-814088,814279-814331,814418-814466,814541-814588,814717-814800	AT4G01883.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  product unknown protein  note LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02475.1); Has 320 Blast hits to 320 proteins in 96 species: Archae - 0; Bacteria - 186; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT4G01883.1p  transcript_id AT4G01883.1  protein_id AT4G01883.1p  transcript_id AT4G01883.1  
At4g01890	chr4:000816210	0.0	W/816210-816596,816704-816871,817024-817071,817167-817374,817751-817835,817918-818428	AT4G01890.1  CDS  gene_syn T7B11.15, T7B11_15  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Parallel beta-helix repeat (InterPro:IPR006626), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT1G02460.1); Has 2537 Blast hits to 2527 proteins in 335 species: Archae - 2; Bacteria - 429; Metazoa - 8; Fungi - 1126; Plants - 888; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT4G01890.1p  transcript_id AT4G01890.1  protein_id AT4G01890.1p  transcript_id AT4G01890.1  
At4g01895	chr4:000819957	0.0	W/819957-820379	AT4G01895.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product systemic acquired resistance (SAR) regulator protein NIMIN-1-related  note systemic acquired resistance (SAR) regulator protein NIMIN-1-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: NIMIN1 (NIM1-INTERACTING 1); protein binding (TAIR:AT1G02450.1); Has 9740 Blast hits to 2901 proteins in 194 species: Archae - 4; Bacteria - 24; Metazoa - 7117; Fungi - 394; Plants - 251; Viruses - 157; Other Eukaryotes - 1793 (source: NCBI BLink).  protein_id AT4G01895.1p  transcript_id AT4G01895.1  protein_id AT4G01895.1p  transcript_id AT4G01895.1  
At4g01897	chr4:000821335	0.0	C/821335-821466,821095-821169,820487-820648	AT4G01897.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF952 (InterPro:IPR009297); Has 597 Blast hits to 597 proteins in 111 species: Archae - 0; Bacteria - 200; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 383 (source: NCBI BLink).  protein_id AT4G01897.1p  transcript_id AT4G01897.1  protein_id AT4G01897.1p  transcript_id AT4G01897.1  
At4g01900	chr4:000821736	0.0	W/821736-821934,822027-822072,822175-822202,822593-822680,822772-822839,822920-822989,823110-823145,823239-823294	AT4G01900.1  CDS  gene_syn GLB1, GLNB1 HOMOLOG, PII, PII PROTEIN, T7B11.16, T7B11_16  gene GLB1  function encodes a PII protein that may function as part of a signal transduction network involved in perceiving the status of carbon and organic nitrogen. Forms a protein complex with N-acetylglutamate kinase and regulates the kinase activity by relieving the feedback inhibition of the kinase by arginine.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|16377628|IDA  go_component chloroplast|GO:0009507|9811909|IEP  go_process nitrogen compound metabolic process|GO:0006807|9811909|ISS  go_process response to light stimulus|GO:0009416|9811909|IEP  go_process anthocyanin biosynthetic process|GO:0009718|9811909|IMP  go_process response to sucrose stimulus|GO:0009744|9811909|IEP  go_process arginine biosynthetic process via ornithine|GO:0042450|16377628|TAS  go_function acetylglutamate kinase regulator activity|GO:0010307|16377628|IDA  product GLB1 (GLNB1 HOMOLOG); acetylglutamate kinase regulator  note GLNB1 HOMOLOG (GLB1); FUNCTIONS IN: acetylglutamate kinase regulator activity; INVOLVED IN: arginine biosynthetic process via ornithine, nitrogen compound metabolic process, response to light stimulus, response to sucrose stimulus, anthocyanin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal (InterPro:IPR015867), Nitrogen regulatory protein PII (InterPro:IPR002187), Nitrogen regulatory protein PII, conserved site (InterPro:IPR017918), Nitrogen regulatory PII-like, alpha/beta (InterPro:IPR011322); Has 4823 Blast hits to 4821 proteins in 968 species: Archae - 268; Bacteria - 3067; Metazoa - 1; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 1449 (source: NCBI BLink).  protein_id AT4G01900.1p  transcript_id AT4G01900.1  protein_id AT4G01900.1p  transcript_id AT4G01900.1  
At4g01910	chr4:000824730	0.0	C/824730-826685	AT4G01910.1  CDS  gene_syn T7B11.17, T7B11_17  go_process intracellular signaling cascade|GO:0007242||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular signaling cascade; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT4G01930.1); Has 1568 Blast hits to 590 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 93; Fungi - 0; Plants - 1460; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT4G01910.1p  transcript_id AT4G01910.1  protein_id AT4G01910.1p  transcript_id AT4G01910.1  
At4g01915	chr4:000827374	0.0	W/827374-827519,827598-827630,828073-828128,828212-828297	AT4G01915.3  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G01915.3p  transcript_id AT4G01915.3  protein_id AT4G01915.3p  transcript_id AT4G01915.3  
At4g01915	chr4:000827374	0.0	W/827374-827519,827598-827673	AT4G01915.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G01915.1p  transcript_id AT4G01915.1  protein_id AT4G01915.1p  transcript_id AT4G01915.1  
At4g01915	chr4:000827374	0.0	W/827374-827519,827598-827673	AT4G01915.2  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G01915.2p  transcript_id AT4G01915.2  protein_id AT4G01915.2p  transcript_id AT4G01915.2  
At4g01920	chr4:000829103	0.0	C/829103-831079	AT4G01920.1  CDS  gene_syn T7B11.18, T7B11_18  go_process intracellular signaling cascade|GO:0007242||IEA  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; INVOLVED IN: intracellular signaling cascade; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT4G01930.1); Has 1384 Blast hits to 516 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 39; Fungi - 0; Plants - 1337; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT4G01920.1p  transcript_id AT4G01920.1  protein_id AT4G01920.1p  transcript_id AT4G01920.1  
At4g01925	chr4:000834380	0.0	C/834380-834634,833387-834293,833241-833278	AT4G01925.1  CDS  go_process intracellular signaling cascade|GO:0007242||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular signaling cascade; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT4G01930.1); Has 994 Blast hits to 480 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 990; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G01925.1p  transcript_id AT4G01925.1  protein_id AT4G01925.1p  transcript_id AT4G01925.1  
At4g01930	chr4:000838802	0.0	C/838802-840760	AT4G01930.1  CDS  gene_syn T7B11.19, T7B11_19  go_process intracellular signaling cascade|GO:0007242||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular signaling cascade; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, petal, flower, root, seed; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT4G01910.1); Has 1515 Blast hits to 565 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 72; Fungi - 0; Plants - 1425; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT4G01930.1p  transcript_id AT4G01930.1  protein_id AT4G01930.1p  transcript_id AT4G01930.1  
At4g01935	chr4:000841102	0.0	W/841102-841380,841464-841582,841691-841879,841964-842015,842097-842228	AT4G01935.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 11 Blast hits to 11 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G01935.1p  transcript_id AT4G01935.1  protein_id AT4G01935.1p  transcript_id AT4G01935.1  
At4g01940	chr4:000843019	0.0	C/843019-843388,842539-842675,842265-842453	AT4G01940.1  CDS  gene_syn AtCNFU1, NFU1, T7B11.20, T7B11_20  gene NFU1  function Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU2 and 3 than to NFU4 and 5. Targeted to the chloroplast.  go_component chloroplast|GO:0009507|12553879|IDA  go_component chloroplast|GO:0009507|15031412|IDA  go_process chloroplast organization|GO:0009658|15031412|ISS  go_process iron-sulfur cluster assembly|GO:0016226|12553879|IGI  go_process iron-sulfur cluster assembly|GO:0016226|15031412|ISS  go_function structural molecule activity|GO:0005198|12553879|TAS  product NFU1; structural molecule  note NFU1; FUNCTIONS IN: structural molecule activity; INVOLVED IN: iron-sulfur cluster assembly, chloroplast organization; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NIF system FeS cluster assembly, NifU, C-terminal (InterPro:IPR001075); BEST Arabidopsis thaliana protein match is: NFU2 (NIFU-LIKE PROTEIN 2); structural molecule (TAIR:AT5G49940.1); Has 3386 Blast hits to 3383 proteins in 678 species: Archae - 4; Bacteria - 1262; Metazoa - 127; Fungi - 101; Plants - 104; Viruses - 2; Other Eukaryotes - 1786 (source: NCBI BLink).  protein_id AT4G01940.1p  transcript_id AT4G01940.1  protein_id AT4G01940.1p  transcript_id AT4G01940.1  
At4g01950	chr4:000846030	0.0	C/846030-846710,844597-845478	AT4G01950.1  CDS  gene_syn ATGPAT3, GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 3, GPAT3, T7B11.21, T7B11_21  gene GPAT3  function Encodes a member of a family of proteins with glycerol-3-phosphate acyltransferase activity.  go_process metabolic process|GO:0008152||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_process metabolic process|GO:0008152||ISS  go_function acyltransferase activity|GO:0008415||ISS  product GPAT3 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 3); acyltransferase  note GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 3 (GPAT3); FUNCTIONS IN: acyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: GPAT2 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2); acyltransferase (TAIR:AT1G02390.1); Has 194 Blast hits to 188 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 185; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G01950.1p  transcript_id AT4G01950.1  protein_id AT4G01950.1p  transcript_id AT4G01950.1  
At4g01960	chr4:000851934	0.0	C/851934-852441,851563-851707,851387-851444	AT4G01960.1  CDS  gene_syn T7B11.22, T7B11_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02380.1); Has 32 Blast hits to 32 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G01960.1p  transcript_id AT4G01960.1  protein_id AT4G01960.1p  transcript_id AT4G01960.1  
At4g01970	chr4:000855454	0.0	C/855454-856953,855178-855355,854724-855097,854073-854651	AT4G01970.1  CDS  gene_syn Arabidopsis thaliana stachyose synthase, AtSTS, T7B11.23, T7B11_23  gene AtSTS  function Encodes a putative stachyose synthetase.  go_process biological_process|GO:0008150||ND  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function galactinol-raffinose galactosyltransferase activity|GO:0047268|15034167|ISS  product AtSTS (Arabidopsis thaliana stachyose synthase); galactinol-raffinose galactosyltransferase/ hydrolase, hydrolyzing O-glycosyl compounds  note Arabidopsis thaliana stachyose synthase (AtSTS); FUNCTIONS IN: galactinol-raffinose galactosyltransferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: biological_process unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Raffinose synthase (InterPro:IPR008811); BEST Arabidopsis thaliana protein match is: SIP1 (seed imbibition 1-like); galactinol-sucrose galactosyltransferase/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT5G40390.1); Has 376 Blast hits to 237 proteins in 70 species: Archae - 14; Bacteria - 38; Metazoa - 0; Fungi - 53; Plants - 266; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G01970.1p  transcript_id AT4G01970.1  protein_id AT4G01970.1p  transcript_id AT4G01970.1  
At4g01975	chr4:000858636	0.0	C/858636-862475	AT4G01975.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to B, blastp match of 51% identity and 4.5e-98 P-value to GP|22830897|dbj|BAC15771.1||AB087616 B {Oryza sativa (japonica cultivar-group)}  
At4g01980	chr4:000863351	0.0	C/863351-864259	AT4G01980.1  mRNA_TE_gene  pseudo  gene_syn T7B11.25, T7B11_25  note Transposable element gene, similar to myb family protein [Arabidopsis thaliana] (TAIR:AT2G22710.1); similar to hypothetical protein 26.t00020 [Brassica oleracea] (GB:ABD65000.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)  
At4g01985	chr4:000866387	0.0	C/866387-868126	AT4G01985.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 750983 Blast hits to 53579 proteins in 2133 species: Archae - 1950; Bacteria - 170077; Metazoa - 260389; Fungi - 56124; Plants - 81329; Viruses - 11557; Other Eukaryotes - 169557 (source: NCBI BLink).  protein_id AT4G01985.1p  transcript_id AT4G01985.1  protein_id AT4G01985.1p  transcript_id AT4G01985.1  
At4g01990	chr4:000872607	0.0	C/872607-872885,871268-872497	AT4G01990.1  CDS  gene_syn T7B11.26, T7B11_26  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G02370.1); Has 2034 Blast hits to 1378 proteins in 59 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 24; Plants - 1941; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT4G01990.1p  transcript_id AT4G01990.1  protein_id AT4G01990.1p  transcript_id AT4G01990.1  
At4g01995	chr4:000873075	0.0	W/873075-873194,873284-873376,873501-873605,873688-873787,873877-873968,874072-874152,874254-874322,874503-874619	AT4G01995.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64680.1); Has 64 Blast hits to 64 proteins in 14 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G01995.1p  transcript_id AT4G01995.1  protein_id AT4G01995.1p  transcript_id AT4G01995.1  
At4g02000	chr4:000874959	0.0	W/874959-875903	AT4G02000.1  CDS  gene_syn T10M13.1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G13450.1); Has 121 Blast hits to 119 proteins in 5 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 119; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G02000.1p  transcript_id AT4G02000.1  protein_id AT4G02000.1p  transcript_id AT4G02000.1  
At4g02005	chr4:000876908	0.0	C/876908-879181	AT4G02005.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G02005.1  
At4g02010	chr4:000881457	0.0	W/881457-881487,882032-882448,882590-882961,883198-883410,883772-884143,884265-884508,884591-884738,884842-885222	AT4G02010.1  CDS  gene_syn T10M13.2, T10M13_2  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G56890.1); Has 84851 Blast hits to 83890 proteins in 3101 species: Archae - 50; Bacteria - 7859; Metazoa - 37267; Fungi - 6603; Plants - 18598; Viruses - 349; Other Eukaryotes - 14125 (source: NCBI BLink).  protein_id AT4G02010.1p  transcript_id AT4G02010.1  protein_id AT4G02010.1p  transcript_id AT4G02010.1  
At4g02020	chr4:000886693	0.0	W/886693-886728,886980-887099,887200-887465,887606-887764,888018-888102,888206-888349,888438-888485,888570-888641,888885-889489,889579-889726,890048-890268,890340-890471,890565-890652,890743-890790,890870-890998,891078-891155,891552-891743	AT4G02020.1  CDS  gene_syn EZA1, SDG10, SET DOMAIN-CONTAINING PROTEIN 10, SWINGER, SWN, T10M13.3, T10M13_3  gene SWN  function Encodes a polycomb group protein. Forms part of a large protein complex that can include VRN2 (VERNALIZATION 2), VIN3 (VERNALIZATION INSENSITIVE 3) and polycomb group proteins FERTILIZATION INDEPENDENT ENDOSPERM (FIE) and CURLY LEAF (CLF). The complex has a role in establishing FLC (FLOWERING LOCUS C) repression during vernalization. Performs a partially redundant role to MEA in controlling seed initiation by helping to suppress central cell nucleus endosperm proliferation within the FG.  go_component nucleus|GO:0005634|16924116|IDA  go_process genetic imprinting|GO:0006349|16527743|IMP  go_process endosperm development|GO:0009960|16924116|IGI  go_process vernalization response|GO:0010048|16983073|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product SWN (SWINGER); transcription factor  note SWINGER (SWN); FUNCTIONS IN: transcription factor activity; INVOLVED IN: genetic imprinting, vernalization response, endosperm development; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), SET (InterPro:IPR001214), SANT, eukarya (InterPro:IPR017884); BEST Arabidopsis thaliana protein match is: CLF (CURLY LEAF); transcription factor (TAIR:AT2G23380.1); Has 3884 Blast hits to 3647 proteins in 342 species: Archae - 0; Bacteria - 297; Metazoa - 1808; Fungi - 312; Plants - 581; Viruses - 0; Other Eukaryotes - 886 (source: NCBI BLink).  protein_id AT4G02020.1p  transcript_id AT4G02020.1  protein_id AT4G02020.1p  transcript_id AT4G02020.1  
At4g02030	chr4:000892262	0.0	W/892262-892432,892898-893037,893163-893217,893306-893413,893521-893619,893750-893827,893982-894059,894198-894350,894591-894691,894781-894848,894972-895045,895130-895196,895391-895506,895604-895858,895939-896055,896132-896203,896284-896334,896420-896656,896751-896927,897050-897175	AT4G02030.1  CDS  gene_syn T10M13.4, T10M13_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vps51/Vps67 (InterPro:IPR014812); BEST Arabidopsis thaliana protein match is: SEC5B (TAIR:AT1G21170.1); Has 386 Blast hits to 358 proteins in 130 species: Archae - 0; Bacteria - 5; Metazoa - 171; Fungi - 64; Plants - 54; Viruses - 4; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT4G02030.1p  transcript_id AT4G02030.1  protein_id AT4G02030.1p  transcript_id AT4G02030.1  
At4g02040	chr4:000897563	0.0	W/897563-898021	AT4G02040.1  CDS  gene_syn T10M13.5, T10M13_5  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 12 Blast hits to 12 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G02040.1p  transcript_id AT4G02040.1  protein_id AT4G02040.1p  transcript_id AT4G02040.1  
At4g02050	chr4:000899951	0.0	C/899951-900095,899550-899869,898387-899463	AT4G02050.1  CDS  gene_syn T10M13.6, T10M13_6  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product sugar transporter, putative  note sugar transporter, putative; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: MSS1; carbohydrate transmembrane transporter/ hexose:hydrogen symporter/ high-affinity hydrogen:glucose symporter/ sugar:hydrogen symporter (TAIR:AT5G26340.1); Has 16728 Blast hits to 16403 proteins in 1108 species: Archae - 191; Bacteria - 6489; Metazoa - 3263; Fungi - 4440; Plants - 1412; Viruses - 0; Other Eukaryotes - 933 (source: NCBI BLink).  protein_id AT4G02050.1p  transcript_id AT4G02050.1  protein_id AT4G02050.1p  transcript_id AT4G02050.1  
At4g02055	chr4:000901176	0.0	W/901176-901247	AT4G02055.1  tRNA  gene_syn 67044.TRNA-HIS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-His (anticodon: GTG)  transcript_id AT4G02055.1  
At4g02060	chr4:000901484	0.0	W/901484-901514,901606-901673,901777-901836,901925-902148,902236-902413,902501-902623,902704-902793,903053-903195,903346-903523,903817-904008,904102-904274,904368-904571,904648-904813,904892-905113,905199-905297	AT4G02060.1  CDS  gene_syn MCM7, PRL, PROLIFERA, T10M13.7, T10M13_7  gene PRL  function PROLIFERA  go_function nucleotide binding|GO:0000166||IEA  go_function DNA binding|GO:0003677||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component nucleus|GO:0005634|10751170|IDA  go_process DNA replication initiation|GO:0006270||ISS  go_process sugar mediated signaling|GO:0010182|12663220|TAS  go_function DNA binding|GO:0003677||ISS  go_function ATP binding|GO:0005524||ISS  go_function DNA-dependent ATPase activity|GO:0008094||ISS  product PRL (PROLIFERA); ATP binding / DNA binding / DNA-dependent ATPase/ nucleoside-triphosphatase/ nucleotide binding  note PROLIFERA (PRL); FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: sugar mediated signaling, DNA replication initiation; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 7 (InterPro:IPR008050); BEST Arabidopsis thaliana protein match is: DNA replication licensing factor, putative (TAIR:AT5G46280.1); Has 3219 Blast hits to 3117 proteins in 461 species: Archae - 251; Bacteria - 361; Metazoa - 988; Fungi - 571; Plants - 254; Viruses - 2; Other Eukaryotes - 792 (source: NCBI BLink).  protein_id AT4G02060.1p  transcript_id AT4G02060.1  protein_id AT4G02060.1p  transcript_id AT4G02060.1  
At4g02070	chr4:000906079	0.0	W/906079-907024,907162-907261,907468-907570,907657-907710,907795-907869,908063-908131,908261-908344,908497-908691,908783-909312,909389-909518,909864-909955,910054-910232,910308-910510,910609-910710,910871-911033,911415-911701,911795-911932,912100-912179,912266-912365,912496-912625,912716-912930	AT4G02070.1  CDS  gene_syn ARABIDOPSIS THALIANA MUTS HOMOLOG 6, ATMSH6, MSH6, MSH6-1, MUTS HOMOLOG 6-1, MUTS HOMOLOG 6, T10M13.8, T10M13_8  gene MSH6  function encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH6 bound the (+T) substrate strongly, (T/G) well, and (+AAG) no better than it did a (T/A) homoduplex.  go_component chloroplast|GO:0009507||IEA  go_process mismatch repair|GO:0006298|10852942|ISS  go_function damaged DNA binding|GO:0003684|10852942|IDA  product MSH6 (MUTS HOMOLOG 6); damaged DNA binding  note MUTS HOMOLOG 6 (MSH6); FUNCTIONS IN: damaged DNA binding; INVOLVED IN: mismatch repair; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein Msh6 (InterPro:IPR017261), DNA mismatch repair protein MutS, clamp (InterPro:IPR007861), DNA mismatch repair protein MutS, connector (InterPro:IPR007860), DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS-like, N-terminal (InterPro:IPR007695), DNA mismatch repair protein MutS, N-terminal (InterPro:IPR016151), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS-homolog MSH6 (InterPro:IPR015536), Tudor (InterPro:IPR002999); BEST Arabidopsis thaliana protein match is: MSH3 (Arabidopsis homolog of DNA mismatch repair protein MSH3); damaged DNA binding / mismatched DNA binding / protein binding (TAIR:AT4G25540.1); Has 23359 Blast hits to 16032 proteins in 1786 species: Archae - 139; Bacteria - 6673; Metazoa - 3241; Fungi - 1728; Plants - 3112; Viruses - 799; Other Eukaryotes - 7667 (source: NCBI BLink).  protein_id AT4G02070.1p  transcript_id AT4G02070.1  protein_id AT4G02070.1p  transcript_id AT4G02070.1  
At4g02075	chr4:000916286	0.0	C/916286-916414,916128-916199,915594-915661,915280-915400,914247-914324,914026-914127,913555-913641	AT4G02075.1  CDS  gene_syn PIT1, pitchoun 1  gene PIT1  go_component plasma membrane|GO:0005886|17644812|IDA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product PIT1 (pitchoun 1); protein binding / zinc ion binding  note pitchoun 1 (PIT1); FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G02960.4); Has 1098 Blast hits to 1097 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 564; Fungi - 66; Plants - 302; Viruses - 27; Other Eukaryotes - 139 (source: NCBI BLink).  protein_id AT4G02075.1p  transcript_id AT4G02075.1  protein_id AT4G02075.1p  transcript_id AT4G02075.1  
At4g02080	chr4:000921554	0.0	W/921554-921682,921898-922029,922227-922547	AT4G02080.1  CDS  gene_syn ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2, ASAR1, ATSAR2, ATSARA1C, T10M13.9, T10M13_9  gene ATSAR2  function A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process intracellular protein transport|GO:0006886||IEA  go_function GTP binding|GO:0005525|12644670|ISS  product ATSAR2 (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2); GTP binding  note ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2 (ATSAR2); FUNCTIONS IN: GTP binding; INVOLVED IN: intracellular protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), GTP-binding protein SAR1 (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: GTP-binding protein, putative (TAIR:AT3G62560.1); Has 5195 Blast hits to 5192 proteins in 287 species: Archae - 2; Bacteria - 33; Metazoa - 2739; Fungi - 842; Plants - 668; Viruses - 0; Other Eukaryotes - 911 (source: NCBI BLink).  protein_id AT4G02080.1p  transcript_id AT4G02080.1  protein_id AT4G02080.1p  transcript_id AT4G02080.1  
At4g02090	chr4:000923122	0.0	W/923122-923730	AT4G02090.1  CDS  gene_syn T10M13.10, T10M13_10  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; Has 71 Blast hits to 71 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G02090.1p  transcript_id AT4G02090.1  protein_id AT4G02090.1p  transcript_id AT4G02090.1  
At4g02100	chr4:000930228	0.0	W/930228-930275,930372-930787,930873-932049	AT4G02100.1  CDS  gene_syn T10M13.11, T10M13_11  go_function binding|GO:0005488||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G47440.1); Has 222 Blast hits to 215 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 63; Fungi - 46; Plants - 96; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT4G02100.1p  transcript_id AT4G02100.1  protein_id AT4G02100.1p  transcript_id AT4G02100.1  
At4g02110	chr4:000935191	0.0	W/935191-935277,935357-935446,935525-935629,935704-935805,935887-935971,936060-936129,936215-936259,936466-939348,939498-939714,939886-940191	AT4G02110.1  CDS  gene_syn T10M13.12, T10M13_12  go_component intracellular|GO:0005622||IEA  go_component intracellular|GO:0005622||ISS  go_process biological_process|GO:0008150||ND  go_function transcription coactivator activity|GO:0003713||ISS  product transcription coactivator  note transcription coactivator; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (TAIR:AT1G67180.1); Has 4717 Blast hits to 3618 proteins in 334 species: Archae - 8; Bacteria - 455; Metazoa - 2222; Fungi - 401; Plants - 196; Viruses - 9; Other Eukaryotes - 1426 (source: NCBI BLink).  protein_id AT4G02110.1p  transcript_id AT4G02110.1  protein_id AT4G02110.1p  transcript_id AT4G02110.1  
At4g02120	chr4:000940873	0.0	W/940873-940990,941067-941146,941227-941313,941402-941570,941645-941701,941799-941863,941929-942012,942082-942132,942203-942265,942340-942386,942474-942543,942610-942672,942738-942827,942915-942953,943015-943164,943249-943326,943411-943496,943579-943627,943707-943787,943867-943960,944048-944097	AT4G02120.1  CDS  gene_syn T10M13.13, T10M13_13  go_component endomembrane system|GO:0012505||IEA  go_process pyrimidine nucleotide biosynthetic process|GO:0006221||IEA  go_process pyrimidine ribonucleotide metabolic process|GO:0009218||IEA  go_function catalytic activity|GO:0003824||IEA  go_function CTP synthase activity|GO:0003883||IEA  go_function CTP synthase activity|GO:0003883||ISS  product CTP synthase, putative / UTP--ammonia ligase, putative  note CTP synthase, putative / UTP--ammonia ligase, putative; FUNCTIONS IN: CTP synthase activity, catalytic activity; INVOLVED IN: pyrimidine ribonucleotide metabolic process, pyrimidine nucleotide biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), CTP synthase (InterPro:IPR004468), CTP synthase, N-terminal (InterPro:IPR017456), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: emb2742 (embryo defective 2742); CTP synthase/ catalytic (TAIR:AT3G12670.1); Has 8033 Blast hits to 8005 proteins in 1727 species: Archae - 146; Bacteria - 2980; Metazoa - 224; Fungi - 172; Plants - 86; Viruses - 0; Other Eukaryotes - 4425 (source: NCBI BLink).  protein_id AT4G02120.1p  transcript_id AT4G02120.1  protein_id AT4G02120.1p  transcript_id AT4G02120.1  
At4g02130	chr4:000945764	0.0	C/945764-946804	AT4G02130.1  CDS  gene_syn GATL6, LGT10, T10M13.14, T10M13_14  gene GATL6  function Encodes a protein with putative galacturonosyltransferase activity.  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS  product GATL6; polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note GATL6; FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: GATL5 (GALACTURONOSYLTRANSFERASE 5); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT1G02720.2); Has 1163 Blast hits to 1155 proteins in 238 species: Archae - 0; Bacteria - 424; Metazoa - 248; Fungi - 2; Plants - 422; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT4G02130.1p  transcript_id AT4G02130.1  protein_id AT4G02130.1p  transcript_id AT4G02130.1  
At4g02130	chr4:000945764	0.0	C/945764-946804	AT4G02130.2  CDS  gene_syn GATL6, LGT10, T10M13.14, T10M13_14  gene GATL6  function Encodes a protein with putative galacturonosyltransferase activity.  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS  product GATL6; polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note GATL6; FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: GATL5 (GALACTURONOSYLTRANSFERASE 5); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT1G02720.2); Has 1163 Blast hits to 1155 proteins in 238 species: Archae - 0; Bacteria - 424; Metazoa - 248; Fungi - 2; Plants - 422; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT4G02130.2p  transcript_id AT4G02130.2  protein_id AT4G02130.2p  transcript_id AT4G02130.2  
At4g02130	chr4:000945764	0.0	C/945764-946804	AT4G02130.3  CDS  gene_syn GATL6, LGT10, T10M13.14, T10M13_14  gene GATL6  function Encodes a protein with putative galacturonosyltransferase activity.  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS  product GATL6; polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note GATL6; FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: GATL5 (GALACTURONOSYLTRANSFERASE 5); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT1G02720.2); Has 1163 Blast hits to 1155 proteins in 238 species: Archae - 0; Bacteria - 424; Metazoa - 248; Fungi - 2; Plants - 422; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT4G02130.3p  transcript_id AT4G02130.3  protein_id AT4G02130.3p  transcript_id AT4G02130.3  
At4g02140	chr4:000950085	0.0	C/950085-950240,949810-949992	AT4G02140.1  CDS  gene_syn T10M13.15, T10M13_15  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02700.1); Has 10 Blast hits to 10 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G02140.1p  transcript_id AT4G02140.1  protein_id AT4G02140.1p  transcript_id AT4G02140.1  
At4g02150	chr4:000953387	0.0	C/953387-953602,952915-953014,952733-952824,952498-952629,952186-952371,951932-952095,951766-951844,951563-951691,951345-951472,950884-951253	AT4G02150.1  CDS  gene_syn ATIMPALPHA3, IMPA-3, IMPORTIN ALPHA 3, IMPORTIN ALPHA ISOFORM 3, MODIFIER OF SNC1, 6, MOS6, T10M13.16, T10M13_16  gene MOS6  function Encodes IMPORTIN ALPHA 3. Mutant plants act as suppressors of snc1 response and salicylic acid accumulation. Located in the nucleus. Involved in protein import. Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.  go_function binding|GO:0005488||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component nucleus|GO:0005634|15964279|IDA  go_process intracellular protein transport|GO:0006886||ISS  go_process defense response|GO:0006952|15964279|IMP  go_function protein transporter activity|GO:0008565||ISS  product MOS6 (MODIFIER OF SNC1, 6); binding / protein transporter  note MODIFIER OF SNC1, 6 (MOS6); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, defense response; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Importin-alpha-like, importin-beta-binding region (InterPro:IPR002652), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: IMPA-6 (IMPORTIN ALPHA ISOFORM 6); binding / protein transporter (TAIR:AT1G02690.1); Has 3388 Blast hits to 2526 proteins in 236 species: Archae - 4; Bacteria - 19; Metazoa - 1779; Fungi - 366; Plants - 674; Viruses - 0; Other Eukaryotes - 546 (source: NCBI BLink).  protein_id AT4G02150.1p  transcript_id AT4G02150.1  protein_id AT4G02150.1p  transcript_id AT4G02150.1  
At4g02160	chr4:000955101	0.0	C/955101-955652	AT4G02160.1  CDS  gene_syn T10M13.23, T10M13_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, embryo, hypocotyl, pollen tube; EXPRESSED DURING: E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G61710.1); Has 18 Blast hits to 18 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G02160.1p  transcript_id AT4G02160.1  protein_id AT4G02160.1p  transcript_id AT4G02160.1  
At4g02170	chr4:000958126	0.0	W/958126-958641	AT4G02170.1  CDS  gene_syn T10M13.17, T10M13_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38700.1); Has 29 Blast hits to 29 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G02170.1p  transcript_id AT4G02170.1  protein_id AT4G02170.1p  transcript_id AT4G02170.1  
At4g02180	chr4:000959964	0.0	W/959964-960056,960641-963517	AT4G02180.1  CDS  gene_syn T10M13.24, T10M13_24  go_process intracellular signaling cascade|GO:0007242||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular signaling cascade; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT4G01930.1); Has 2360 Blast hits to 560 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 0; Plants - 2294; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT4G02180.1p  transcript_id AT4G02180.1  protein_id AT4G02180.1p  transcript_id AT4G02180.1  
At4g02190	chr4:000967372	0.0	W/967372-969351	AT4G02190.1  CDS  gene_syn T10M13.18, T10M13_18  go_process intracellular signaling cascade|GO:0007242||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular signaling cascade; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT4G01760.1); Has 1382 Blast hits to 562 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 65; Fungi - 0; Plants - 1290; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT4G02190.1p  transcript_id AT4G02190.1  protein_id AT4G02190.1p  transcript_id AT4G02190.1  
At4g02195	chr4:000972002	0.0	C/972002-972192,971555-971831,971152-971241,970963-971043,970638-970715,970488-970553,970300-970380,970099-970206	AT4G02195.1  CDS  gene_syn ATSYP42, ATTLG2B, SYNTAXIN OF PLANTS 42, SYP42, TLG2B  gene SYP42  function member of SYP4 Gene Family  go_component trans-Golgi network|GO:0005802|10888666|IDA  go_component trans-Golgi network|GO:0005802|11115874|TAS  go_component trans-Golgi network transport vesicle|GO:0030140|11115874|TAS  go_process intracellular protein transport|GO:0006886|11115874|TAS  go_process membrane fusion|GO:0006944|11115874|TAS  go_function SNAP receptor activity|GO:0005484|11115874|TAS  product SYP42 (SYNTAXIN OF PLANTS 42); SNAP receptor  note SYNTAXIN OF PLANTS 42 (SYP42); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion, intracellular protein transport; LOCATED IN: trans-Golgi network, trans-Golgi network transport vesicle; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: SYP41 (SYNTAXIN OF PLANTS 41); SNAP receptor (TAIR:AT5G26980.2); Has 1639 Blast hits to 1628 proteins in 199 species: Archae - 0; Bacteria - 18; Metazoa - 777; Fungi - 327; Plants - 218; Viruses - 0; Other Eukaryotes - 299 (source: NCBI BLink).  protein_id AT4G02195.1p  transcript_id AT4G02195.1  protein_id AT4G02195.1p  transcript_id AT4G02195.1  
At4g02200	chr4:000972776	0.0	W/972776-972857,973064-973197,973259-973300,973530-973607,973758-973990,974086-974203	AT4G02200.3  CDS  gene_syn T2H3.13  go_process response to water deprivation|GO:0009414||ISS  product drought-responsive family protein  note drought-responsive family protein; INVOLVED IN: response to water deprivation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Drought induced 19 (InterPro:IPR008598); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G02750.1).  protein_id AT4G02200.3p  transcript_id AT4G02200.3  protein_id AT4G02200.3p  transcript_id AT4G02200.3  
At4g02200	chr4:000972776	0.0	W/972776-972857,973064-973197,973530-973607,973758-973990,974086-974159,974310-974332	AT4G02200.2  CDS  gene_syn T2H3.13  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process response to water deprivation|GO:0009414||ISS  product drought-responsive family protein  note drought-responsive family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to water deprivation; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Drought induced 19 (InterPro:IPR008598); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G02750.1); Has 125 Blast hits to 125 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G02200.2p  transcript_id AT4G02200.2  protein_id AT4G02200.2p  transcript_id AT4G02200.2  
At4g02200	chr4:000972776	0.0	W/972776-972857,973064-973197,973530-973607,973758-973990,974086-974203	AT4G02200.1  CDS  gene_syn T2H3.13  go_process response to water deprivation|GO:0009414||ISS  product drought-responsive family protein  note drought-responsive family protein; INVOLVED IN: response to water deprivation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Drought induced 19 (InterPro:IPR008598); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G02750.1); Has 126 Blast hits to 126 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G02200.1p  transcript_id AT4G02200.1  protein_id AT4G02200.1p  transcript_id AT4G02200.1  
At4g02210	chr4:000975588	0.0	C/975588-975917,975413-975506,974887-975305,974320-974796	AT4G02210.1  CDS  gene_syn T2H3.2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 475 Blast hits to 288 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 12; Plants - 463; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G02210.1p  transcript_id AT4G02210.1  protein_id AT4G02210.1p  transcript_id AT4G02210.1  
At4g02220	chr4:000976728	0.0	W/976728-976964,977063-977146,977230-977363,977463-977560,977647-977735,977829-977943,978020-978174,978254-978324,978411-978525,978744-978902	AT4G02220.1  CDS  gene_syn T2H3.12  go_component cytoplasm|GO:0005737||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein  note zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Programmed cell death protein 2, C-terminal (InterPro:IPR007320), Zinc finger, MYND-type (InterPro:IPR002893); BEST Arabidopsis thaliana protein match is: programmed cell death 2 C-terminal domain-containing protein (TAIR:AT5G64830.1); Has 702 Blast hits to 666 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 368; Fungi - 111; Plants - 110; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).  protein_id AT4G02220.1p  transcript_id AT4G02220.1  protein_id AT4G02220.1p  transcript_id AT4G02220.1  
At4g02230	chr4:000980529	0.0	C/980529-980640,979947-980069,979503-979866,979391-979418	AT4G02230.1  CDS  gene_syn T2H3.3, T2H3_3  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L19 (RPL19C)  note 60S ribosomal protein L19 (RPL19C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L19/L19e (InterPro:IPR000196), Ribosomal protein L19/L19e, domain 3 (InterPro:IPR015974), Ribosomal protein L19/L19e, domain 1 (InterPro:IPR015972); BEST Arabidopsis thaliana protein match is: emb2386 (embryo defective 2386); structural constituent of ribosome (TAIR:AT1G02780.1); Has 848 Blast hits to 848 proteins in 295 species: Archae - 206; Bacteria - 0; Metazoa - 265; Fungi - 103; Plants - 93; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink).  protein_id AT4G02230.1p  transcript_id AT4G02230.1  protein_id AT4G02230.1p  transcript_id AT4G02230.1  
At4g02235	chr4:000980955	0.0	W/980955-981183,981350-981711	AT4G02235.1  CDS  gene_syn AGL51  gene AGL51  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL51; transcription factor  note AGL51; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL78 (AGAMOUS-LIKE 78); transcription factor (TAIR:AT5G65330.1); Has 244 Blast hits to 242 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 242; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G02235.1p  transcript_id AT4G02235.1  protein_id AT4G02235.1p  transcript_id AT4G02235.1  
At4g02250	chr4:000983970	0.0	W/983970-984033,984150-984523	AT4G02250.1  CDS  gene_syn T2H3.11, T2H3_11  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT1G55770.1); Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G02250.1p  transcript_id AT4G02250.1  protein_id AT4G02250.1p  transcript_id AT4G02250.1  
At4g02260	chr4:000985451	0.0	W/985451-985475,986102-986292,986477-986659,986745-986810,986965-987057,987140-987271,987384-987485,987561-987638,987730-987801,987976-988083,988263-988360,988443-988503,988616-988681,988771-988827,988897-988998,989151-989309,989426-989557,989645-989731,989851-989922,990052-990138,990215-990662,990749-990810,990897-990965,991074-991178	AT4G02260.1  CDS  gene_syn AT-RSH1, ATRSH1, RELA-SPOT HOMOLOG 1, RELA/SPOT HOMOLOG 1, RSH1, T2H3.10, T2H3_10  gene RSH1  go_component chloroplast|GO:0009507|18431481|IDA  go_function catalytic activity|GO:0003824||IEA  go_component chloroplast|GO:0009507|18535838|IDA  go_process response to wounding|GO:0009611|18535838|IEP  product RSH1 (RELA-SPOT HOMOLOG 1); catalytic  note RELA-SPOT HOMOLOG 1 (RSH1); FUNCTIONS IN: catalytic activity; INVOLVED IN: response to wounding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TGS-like (InterPro:IPR012676), Metal-dependent phosphohydrolase, HD region, subdomain (InterPro:IPR006674), TGS (InterPro:IPR004095), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), Metal-dependent phosphohydrolase, HD region (InterPro:IPR003607), RelA/SpoT (InterPro:IPR007685); BEST Arabidopsis thaliana protein match is: RSH3 (RELA/SPOT HOMOLOG 3); GTP diphosphokinase (TAIR:AT1G54130.1); Has 8102 Blast hits to 8095 proteins in 1310 species: Archae - 6; Bacteria - 4034; Metazoa - 88; Fungi - 4; Plants - 126; Viruses - 2; Other Eukaryotes - 3842 (source: NCBI BLink).  protein_id AT4G02260.1p  transcript_id AT4G02260.1  protein_id AT4G02260.1p  transcript_id AT4G02260.1  
At4g02260	chr4:000985451	0.0	W/985451-985475,986102-986292,986477-986659,986745-986810,986965-987057,987140-987271,987384-987485,987561-987638,987730-987801,987976-988083,988263-988360,988443-988503,988619-988681,988771-988827,988897-988998,989151-989309,989426-989557,989645-989731,989851-989922,990052-990138,990215-990662,990749-990810,990897-990965,991074-991178	AT4G02260.2  CDS  gene_syn AT-RSH1, ATRSH1, RELA-SPOT HOMOLOG 1, RELA/SPOT HOMOLOG 1, RSH1, T2H3.10, T2H3_10  gene RSH1  go_component chloroplast|GO:0009507|18431481|IDA  go_function catalytic activity|GO:0003824||IEA  go_component chloroplast|GO:0009507|18535838|IDA  go_process response to wounding|GO:0009611|18535838|IEP  product RSH1 (RELA-SPOT HOMOLOG 1); catalytic  note RELA-SPOT HOMOLOG 1 (RSH1); FUNCTIONS IN: catalytic activity; INVOLVED IN: response to wounding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD region, subdomain (InterPro:IPR006674), TGS-like (InterPro:IPR012676), TGS (InterPro:IPR004095), Metal-dependent phosphohydrolase, HD region (InterPro:IPR003607), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), RelA/SpoT (InterPro:IPR007685); BEST Arabidopsis thaliana protein match is: RSH3 (RELA/SPOT HOMOLOG 3); GTP diphosphokinase (TAIR:AT1G54130.1); Has 8127 Blast hits to 8120 proteins in 1310 species: Archae - 6; Bacteria - 4059; Metazoa - 88; Fungi - 4; Plants - 126; Viruses - 2; Other Eukaryotes - 3842 (source: NCBI BLink).  protein_id AT4G02260.2p  transcript_id AT4G02260.2  protein_id AT4G02260.2p  transcript_id AT4G02260.2  
At4g02260	chr4:000985451	0.0	W/985451-985475,986102-986292,986477-986659,986745-986810,986965-987057,987140-987271,987384-987485,987561-987638,987730-987801,987976-988083,988263-988360,988443-988503,988619-988681,988771-988827,988897-988998,989151-989309,989426-989557,989645-989731,989851-989922,990052-990138,990215-990697	AT4G02260.3  CDS  gene_syn AT-RSH1, ATRSH1, RELA-SPOT HOMOLOG 1, RELA/SPOT HOMOLOG 1, RSH1, T2H3.10, T2H3_10  gene RSH1  go_component chloroplast|GO:0009507|18431481|IDA  go_function catalytic activity|GO:0003824||IEA  go_component chloroplast|GO:0009507|18535838|IDA  go_process response to wounding|GO:0009611|18535838|IEP  product RSH1 (RELA-SPOT HOMOLOG 1); catalytic  note RELA-SPOT HOMOLOG 1 (RSH1); FUNCTIONS IN: catalytic activity; INVOLVED IN: response to wounding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD region, subdomain (InterPro:IPR006674), TGS-like (InterPro:IPR012676), TGS (InterPro:IPR004095), Metal-dependent phosphohydrolase, HD region (InterPro:IPR003607), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), RelA/SpoT (InterPro:IPR007685); BEST Arabidopsis thaliana protein match is: RSH3 (RELA/SPOT HOMOLOG 3); GTP diphosphokinase (TAIR:AT1G54130.1); Has 8127 Blast hits to 8120 proteins in 1310 species: Archae - 6; Bacteria - 4059; Metazoa - 88; Fungi - 4; Plants - 126; Viruses - 2; Other Eukaryotes - 3842 (source: NCBI BLink).  protein_id AT4G02260.3p  transcript_id AT4G02260.3  protein_id AT4G02260.3p  transcript_id AT4G02260.3  
At4g02270	chr4:000992822	0.0	C/992822-992996,992383-992705	AT4G02270.1  CDS  gene_syn T2H3.4, T2H3_4  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pollen Ole e 1 allergen and extensin family protein  note pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen and extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: pollen Ole e 1 allergen and extensin family protein (TAIR:AT2G47540.1); Has 51 Blast hits to 51 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G02270.1p  transcript_id AT4G02270.1  protein_id AT4G02270.1p  transcript_id AT4G02270.1  
At4g02280	chr4:000995166	0.0	W/995166-995263,995352-995484,995555-995899,995986-996321,996397-996492,996590-996880,996974-997140,997205-997429,997574-997895,998136-998380,998463-998601,998687-998719	AT4G02280.1  CDS  gene_syn ATSUS3, SUS3, T2H3.8, T2H3_8, sucrose synthase 3  gene SUS3  function Encodes a protein with sucrose synthase activity (SUS3).  go_process sucrose metabolic process|GO:0005985||IEA  go_process biosynthetic process|GO:0009058||IEA  go_process sucrose biosynthetic process|GO:0005986||ISS  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function sucrose synthase activity|GO:0016157|17257168|IDA  go_function sucrose synthase activity|GO:0016157||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product SUS3 (sucrose synthase 3); UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups  note sucrose synthase 3 (SUS3); FUNCTIONS IN: UDP-glycosyltransferase activity, sucrose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: sucrose biosynthetic process, biosynthetic process, sucrose metabolic process; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sucrose synthase, plants and cyanobacteria (InterPro:IPR012820), Sucrose synthase (InterPro:IPR000368), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: SUS2 (SUCROSE SYNTHASE 2); UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups (TAIR:AT5G49190.1); Has 4107 Blast hits to 4104 proteins in 917 species: Archae - 148; Bacteria - 2453; Metazoa - 84; Fungi - 36; Plants - 467; Viruses - 0; Other Eukaryotes - 919 (source: NCBI BLink).  protein_id AT4G02280.1p  transcript_id AT4G02280.1  protein_id AT4G02280.1p  transcript_id AT4G02280.1  
At4g02290	chr4:001004847	0.0	C/1004847-1005125,1004065-1004472,1003891-1003983,1003629-1003790,1003443-1003554,1003082-1003245,1002654-1002986	AT4G02290.1  CDS  gene_syn Arabidopsis thaliana glycosyl hydrolase 9B13, AtGH9B13, T2H3.5, T2H3_5  gene AtGH9B13  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product AtGH9B13 (Arabidopsis thaliana glycosyl hydrolase 9B13); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds  note Arabidopsis thaliana glycosyl hydrolase 9B13 (AtGH9B13); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: ATCEL2; cellulase/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G02800.1); Has 1099 Blast hits to 1093 proteins in 183 species: Archae - 0; Bacteria - 295; Metazoa - 138; Fungi - 14; Plants - 625; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT4G02290.1p  transcript_id AT4G02290.1  protein_id AT4G02290.1p  transcript_id AT4G02290.1  
At4g02300	chr4:001012289	0.0	C/1012289-1013034,1011522-1011682,1009366-1010057	AT4G02300.1  CDS  gene_syn T2H3.6, T2H3_6  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower, cultured cell; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase inhibitor (InterPro:IPR006501), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT4G02320.1); Has 1264 Blast hits to 1222 proteins in 180 species: Archae - 0; Bacteria - 244; Metazoa - 1; Fungi - 133; Plants - 886; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G02300.1p  transcript_id AT4G02300.1  protein_id AT4G02300.1p  transcript_id AT4G02300.1  
At4g02310	chr4:001014680	0.0	C/1014680-1015729	AT4G02310.1  CDS  gene_syn T2H3.7, T2H3_7  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT2G44630.1); Has 353 Blast hits to 341 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 350; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G02310.1p  transcript_id AT4G02310.1  protein_id AT4G02310.1p  transcript_id AT4G02310.1  
At4g02312	chr4:001017843	0.0	C/1017843-1018394	AT4G02312.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g02314	chr4:001018434	0.0	W/1018434-1020824	AT4G02314.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 2.7e-126 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At4g02317	chr4:001021318	0.0	C/1021318-1021717	AT4G02317.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 3.6e-25 P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element)  
At4g02320	chr4:001025415	0.0	C/1025415-1026118,1023594-1023754,1022725-1023416	AT4G02320.1  CDS  gene_syn T14P8.1, T14P8_1  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase inhibitor (InterPro:IPR006501), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT4G02300.1); Has 1294 Blast hits to 1258 proteins in 182 species: Archae - 0; Bacteria - 236; Metazoa - 1; Fungi - 133; Plants - 920; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G02320.1p  transcript_id AT4G02320.1  protein_id AT4G02320.1p  transcript_id AT4G02320.1  
At4g02325	chr4:001029682	0.0	C/1029682-1029780	AT4G02325.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G02325.1p  transcript_id AT4G02325.1  protein_id AT4G02325.1p  transcript_id AT4G02325.1  
At4g02330	chr4:001032479	0.0	W/1032479-1033505,1034234-1034928	AT4G02330.1  CDS  gene_syn ATPMEPCRB, T14P8.14, T14P8_14  gene ATPMEPCRB  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process response to salt stress|GO:0009651|11351099|IEP  go_function pectinesterase activity|GO:0030599|9767082|ISS  product ATPMEPCRB; pectinesterase  note ATPMEPCRB; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system, cell wall; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase inhibitor (InterPro:IPR006501), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT1G02810.1); Has 1294 Blast hits to 1260 proteins in 179 species: Archae - 2; Bacteria - 242; Metazoa - 1; Fungi - 132; Plants - 915; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G02330.1p  transcript_id AT4G02330.1  protein_id AT4G02330.1p  transcript_id AT4G02330.1  
At4g02340	chr4:001035722	0.0	W/1035722-1036186,1036794-1037032,1037133-1037403	AT4G02340.1  CDS  gene_syn T14P8.15, T14P8_15  go_component peroxisome|GO:0005777|17951448|IDA  go_function catalytic activity|GO:0003824||IEA  go_function epoxide hydrolase activity|GO:0004301||ISS  product epoxide hydrolase, putative  note epoxide hydrolase, putative; FUNCTIONS IN: epoxide hydrolase activity, catalytic activity; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: epoxide hydrolase, putative (TAIR:AT3G05600.1); Has 14860 Blast hits to 14817 proteins in 1192 species: Archae - 62; Bacteria - 9816; Metazoa - 553; Fungi - 353; Plants - 343; Viruses - 7; Other Eukaryotes - 3726 (source: NCBI BLink).  protein_id AT4G02340.1p  transcript_id AT4G02340.1  protein_id AT4G02340.1p  transcript_id AT4G02340.1  
At4g02350	chr4:001038157	0.0	W/1038157-1039140,1039192-1039394,1039443-1040571	AT4G02350.1  CDS  gene_syn T14P8.16, T14P8_16  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component exocyst|GO:0000145|18492870|IDA  go_process pollen germination|GO:0009846|18492870|IMP  go_process pollen tube growth|GO:0009860|18492870|IMP  go_function molecular_function|GO:0003674||ND  product exocyst complex subunit Sec15-like family protein  note exocyst complex subunit Sec15-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen germination, pollen tube growth; LOCATED IN: plasma membrane, membrane, exocyst; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exocyst complex subunit Sec15-like (InterPro:IPR007225), Vps51/Vps67 (InterPro:IPR014812); BEST Arabidopsis thaliana protein match is: exocyst complex subunit Sec15-like family protein (TAIR:AT3G56640.1); Has 306 Blast hits to 302 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 146; Fungi - 90; Plants - 46; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT4G02350.1p  transcript_id AT4G02350.1  protein_id AT4G02350.1p  transcript_id AT4G02350.1  
At4g02360	chr4:001041179	0.0	W/1041179-1041643	AT4G02360.1  CDS  gene_syn T14P8.17, T14P8_17  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02813.1); Has 294 Blast hits to 294 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 293; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G02360.1p  transcript_id AT4G02360.1  protein_id AT4G02360.1p  transcript_id AT4G02360.1  
At4g02370	chr4:001042458	0.0	W/1042458-1042961	AT4G02370.1  CDS  gene_syn T14P8.18, T14P8_18  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02816.1); Has 336 Blast hits to 333 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 335; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G02370.1p  transcript_id AT4G02370.1  protein_id AT4G02370.1p  transcript_id AT4G02370.1  
At4g02380	chr4:001046730	0.0	C/1046730-1046746,1046414-1046633	AT4G02380.2  CDS  gene_syn Arabidopsis thaliana late embryogenensis abundant like 5, AtLEA5, SAG21, SENESCENCE-ASSOCIATED GENE 21, T14P8.2, T14P8_2  gene SAG21  function Encodes AtLEA5 (late embryogenesis abundant like protein). Also known as SENESCENCE-ASSOCIATED GENE 21 (SAG21). Has a role on oxidative stress tolerance. mRNA levels are elevated in response to various stresses.  go_process response to reactive oxygen species|GO:0000302|10444084|IEP  go_process response to oxidative stress|GO:0006979|17092320|IMP  go_process response to cold|GO:0009409|11158529|IEP  go_process response to cold|GO:0009409|12172015|IEP  go_process response to cold|GO:0009409|16258011|IEP  go_process embryonic development|GO:0009790||ISS  go_process cellular response to water deprivation|GO:0042631|17092320|IEP  go_function molecular_function|GO:0003674||ND  product SAG21 (SENESCENCE-ASSOCIATED GENE 21)  note SENESCENCE-ASSOCIATED GENE 21 (SAG21); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development, response to reactive oxygen species, response to oxidative stress, response to cold, cellular response to water deprivation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein 3 (InterPro:IPR004926); BEST Arabidopsis thaliana protein match is: late embryogenesis abundant 3 family protein / LEA3 family protein (TAIR:AT1G02820.1); Has 98 Blast hits to 98 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G02380.2p  transcript_id AT4G02380.2  protein_id AT4G02380.2p  transcript_id AT4G02380.2  
At4g02380	chr4:001046734	0.0	C/1046734-1046807,1046414-1046633	AT4G02380.1  CDS  gene_syn Arabidopsis thaliana late embryogenensis abundant like 5, AtLEA5, SAG21, SENESCENCE-ASSOCIATED GENE 21, T14P8.2, T14P8_2  gene SAG21  function Encodes AtLEA5 (late embryogenesis abundant like protein). Also known as SENESCENCE-ASSOCIATED GENE 21 (SAG21). Has a role on oxidative stress tolerance. mRNA levels are elevated in response to various stresses.  go_process response to reactive oxygen species|GO:0000302|10444084|IEP  go_process response to oxidative stress|GO:0006979|17092320|IMP  go_process response to cold|GO:0009409|11158529|IEP  go_process response to cold|GO:0009409|12172015|IEP  go_process response to cold|GO:0009409|16258011|IEP  go_process embryonic development|GO:0009790||ISS  go_process cellular response to water deprivation|GO:0042631|17092320|IEP  go_function molecular_function|GO:0003674||ND  product SAG21 (SENESCENCE-ASSOCIATED GENE 21)  note SENESCENCE-ASSOCIATED GENE 21 (SAG21); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development, response to reactive oxygen species, response to oxidative stress, response to cold, cellular response to water deprivation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein 3 (InterPro:IPR004926); BEST Arabidopsis thaliana protein match is: late embryogenesis abundant 3 family protein / LEA3 family protein (TAIR:AT1G02820.1); Has 109 Blast hits to 106 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G02380.1p  transcript_id AT4G02380.1  protein_id AT4G02380.1p  transcript_id AT4G02380.1  
At4g02390	chr4:001050104	0.0	W/1050104-1050187,1050265-1050526,1050608-1050753,1050846-1050927,1051109-1051344,1051541-1051670,1051885-1051940,1052034-1052107,1052220-1052266,1052343-1052392,1052500-1052562,1052656-1052736,1052846-1052956,1053048-1053123,1053227-1053369,1053491-1053564,1053676-1053781,1053868-1053960	AT4G02390.1  CDS  gene_syn APP, ARABIDOPSIS POLY(ADP-RIBOSE) POLYMERASE, ATPARP1, PARP1, POLY(ADP-RIBOSE) POLYMERASE, POLY(ADP-RIBOSE) POLYMERASE 1, T14P8.19, T14P8_19  gene APP  function Encodes a DNA dependent nuclear poly (ADP-ribose) polymerase (E.C.2.4.2.30), thought to be involved in post-translational modification .  go_process protein amino acid ADP-ribosylation|GO:0006471||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function NAD+ ADP-ribosyltransferase activity|GO:0003950||IEA  go_component nucleus|GO:0005634|9778846|IDA  go_process protein amino acid ADP-ribosylation|GO:0006471||ISS  go_function NAD+ ADP-ribosyltransferase activity|GO:0003950||ISS  product APP (ARABIDOPSIS POLY(ADP-RIBOSE) POLYMERASE); NAD+ ADP-ribosyltransferase/ nucleic acid binding  note ARABIDOPSIS POLY(ADP-RIBOSE) POLYMERASE (APP); FUNCTIONS IN: NAD+ ADP-ribosyltransferase activity, nucleic acid binding; INVOLVED IN: protein amino acid ADP-ribosylation; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034), WGR (InterPro:IPR008893), Poly(ADP-ribose) polymerase, regulatory region (InterPro:IPR004102), Poly(ADP-ribose) polymerase, catalytic region (InterPro:IPR012317); BEST Arabidopsis thaliana protein match is: PARP2 (POLY(ADP-RIBOSE) POLYMERASE 2); DNA binding / NAD or NADH binding / NAD+ ADP-ribosyltransferase/ zinc ion binding (TAIR:AT2G31320.1); Has 813 Blast hits to 802 proteins in 125 species: Archae - 0; Bacteria - 6; Metazoa - 499; Fungi - 56; Plants - 98; Viruses - 4; Other Eukaryotes - 150 (source: NCBI BLink).  protein_id AT4G02390.1p  transcript_id AT4G02390.1  protein_id AT4G02390.1p  transcript_id AT4G02390.1  
At4g02400	chr4:001054243	0.0	W/1054243-1054509,1054787-1054916,1055005-1055486,1055613-1055831,1055918-1056232,1056329-1056637,1056725-1056805,1056887-1056964,1057035-1057415,1057492-1057623,1057711-1057884	AT4G02400.1  CDS  gene_syn T14P8.20, T14P8_20  go_component small-subunit processome|GO:0032040||IEA  go_process rRNA processing|GO:0006364||IEA  go_process rRNA processing|GO:0006364||ISS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: small-subunit processome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp14 (InterPro:IPR006709); BEST Arabidopsis thaliana protein match is: U3 ribonucleoprotein (Utp) family protein (TAIR:AT5G08600.1); Has 7412 Blast hits to 4272 proteins in 301 species: Archae - 10; Bacteria - 517; Metazoa - 2926; Fungi - 722; Plants - 242; Viruses - 149; Other Eukaryotes - 2846 (source: NCBI BLink).  protein_id AT4G02400.1p  transcript_id AT4G02400.1  protein_id AT4G02400.1p  transcript_id AT4G02400.1  
At4g02405	chr4:001059428	0.0	C/1059428-1059671,1059069-1059226,1058858-1058978,1058598-1058722,1058405-1058518,1058118-1058309	AT4G02405.2  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 687 Blast hits to 687 proteins in 78 species: Archae - 34; Bacteria - 600; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT4G02405.2p  transcript_id AT4G02405.2  protein_id AT4G02405.2p  transcript_id AT4G02405.2  
At4g02405	chr4:001059428	0.0	C/1059428-1059671,1059069-1059226,1058858-1058978,1058598-1058722,1058405-1058518,1058142-1058309,1057999-1058070	AT4G02405.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 687 Blast hits to 687 proteins in 78 species: Archae - 34; Bacteria - 600; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT4G02405.1p  transcript_id AT4G02405.1  protein_id AT4G02405.1p  transcript_id AT4G02405.1  
At4g02410	chr4:001060086	0.0	C/1060086-1062110	AT4G02410.1  CDS  gene_syn T14P8.3, T14P8_3  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product lectin protein kinase family protein  note lectin protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin protein kinase, putative (TAIR:AT4G02420.1); Has 83335 Blast hits to 82309 proteins in 3266 species: Archae - 42; Bacteria - 7264; Metazoa - 36502; Fungi - 6404; Plants - 19344; Viruses - 367; Other Eukaryotes - 13412 (source: NCBI BLink).  protein_id AT4G02410.1p  transcript_id AT4G02410.1  protein_id AT4G02410.1p  transcript_id AT4G02410.1  
At4g02420	chr4:001064363	0.0	C/1064363-1066372	AT4G02420.1  CDS  gene_syn T14P8.4, T14P8_4  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product lectin protein kinase, putative  note lectin protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: RLK (receptor lectin kinase); kinase (TAIR:AT2G37710.1); Has 83158 Blast hits to 82199 proteins in 3185 species: Archae - 44; Bacteria - 7152; Metazoa - 36352; Fungi - 6309; Plants - 19360; Viruses - 388; Other Eukaryotes - 13553 (source: NCBI BLink).  protein_id AT4G02420.1p  transcript_id AT4G02420.1  protein_id AT4G02420.1p  transcript_id AT4G02420.1  
At4g02425	chr4:001067991	0.0	C/1067991-1068663,1067531-1067646	AT4G02425.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 17 Blast hits to 16 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G02425.1p  transcript_id AT4G02425.1  protein_id AT4G02425.1p  transcript_id AT4G02425.1  
At4g02430	chr4:001069186	0.0	W/1069186-1069272,1069458-1069523,1069666-1069740,1069832-1069967,1070046-1070092,1070181-1070238,1070368-1070417,1070526-1070543	AT4G02430.1  CDS  gene_syn T14P8.21, T14P8_21  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product pre-mRNA splicing factor, putative / SR1 protein, putative  note pre-mRNA splicing factor, putative / SR1 protein, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: SR1; RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT1G02840.3); Has 10740 Blast hits to 10185 proteins in 507 species: Archae - 10; Bacteria - 714; Metazoa - 5973; Fungi - 1479; Plants - 1528; Viruses - 0; Other Eukaryotes - 1036 (source: NCBI BLink).  protein_id AT4G02430.1p  transcript_id AT4G02430.1  protein_id AT4G02430.1p  transcript_id AT4G02430.1  
At4g02430	chr4:001069186	0.0	W/1069186-1069272,1069458-1069523,1069666-1069740,1069832-1069967,1070046-1070092,1070181-1070238,1070368-1070417,1070536-1070583,1070657-1070886,1071274-1071313	AT4G02430.2  CDS  gene_syn T14P8.21, T14P8_21  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product pre-mRNA splicing factor, putative / SR1 protein, putative  note pre-mRNA splicing factor, putative / SR1 protein, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: SR1; RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT1G02840.3); Has 21454 Blast hits to 14252 proteins in 615 species: Archae - 10; Bacteria - 760; Metazoa - 14239; Fungi - 1994; Plants - 2024; Viruses - 303; Other Eukaryotes - 2124 (source: NCBI BLink).  protein_id AT4G02430.2p  transcript_id AT4G02430.2  protein_id AT4G02430.2p  transcript_id AT4G02430.2  
At4g02440	chr4:001072555	0.0	W/1072555-1073565	AT4G02440.1  CDS  gene_syn EID1, EMPFINDLICHER IM DUNKELROTEN LICHT 1, T14P8.22, T14P8_22  gene EID1  function EID1 is an F-box protein that functions as a negative regulator in phytochrome A (phyA)-specific light signalling. Expressed at all stages of plant development independently of light conditions, localizes to the nucleus, and forms nuclear speckles under continuous far-red light. Forms stable dimeric and trimeric complexes with several ASK proteins and Cullin1 in yeast and in planta.  go_component nucleus|GO:0005634|16412087|IDA  go_process red, far-red light phototransduction|GO:0009585|10760243|IMP  go_process regulation of photomorphogenesis|GO:0010099|16412087|IMP  go_process leaf development|GO:0048366|16412087|IMP  go_process photoperiodism, flowering|GO:0048573|16412087|IMP  go_function ubiquitin-protein ligase activity|GO:0004842|11316788|ISS  product EID1 (EMPFINDLICHER IM DUNKELROTEN LICHT 1); ubiquitin-protein ligase  note EMPFINDLICHER IM DUNKELROTEN LICHT 1 (EID1); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: photoperiodism, flowering, red, far-red light phototransduction, leaf development, regulation of photomorphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); Has 60 Blast hits to 47 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G02440.1p  transcript_id AT4G02440.1  protein_id AT4G02440.1p  transcript_id AT4G02440.1  
At4g02450	chr4:001075761	0.0	C/1075761-1075765,1075027-1075213,1074785-1074941,1074550-1074677,1074321-1074456,1073987-1074096	AT4G02450.2  CDS  gene_syn T14P8.5, T14P8_5  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CS domain (InterPro:IPR007052), HSP20-like chaperone (InterPro:IPR008978), CS (InterPro:IPR017447); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03773.1).  protein_id AT4G02450.2p  transcript_id AT4G02450.2  protein_id AT4G02450.2p  transcript_id AT4G02450.2  
At4g02450	chr4:001075761	0.0	C/1075761-1075765,1075027-1075213,1074785-1074941,1074550-1074677,1074321-1074456,1073987-1074099	AT4G02450.1  CDS  gene_syn T14P8.5, T14P8_5  go_component plasma membrane|GO:0005886|17644812|IDA  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CS domain (InterPro:IPR007052), HSP20-like chaperone (InterPro:IPR008978), CS (InterPro:IPR017447); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03773.1); Has 46378 Blast hits to 11178 proteins in 874 species: Archae - 70; Bacteria - 23566; Metazoa - 10100; Fungi - 1919; Plants - 4009; Viruses - 377; Other Eukaryotes - 6337 (source: NCBI BLink).  protein_id AT4G02450.1p  transcript_id AT4G02450.1  protein_id AT4G02450.1p  transcript_id AT4G02450.1  
At4g02460	chr4:001080262	0.0	C/1080262-1080510,1079843-1080166,1078341-1079480,1077945-1078222,1077728-1077854,1077544-1077612,1077306-1077379,1077051-1077116,1076863-1076966,1076605-1076786,1076306-1076464	AT4G02460.1  CDS  gene_syn ATPMS1, PMS1, POSTMEIOTIC SEGREGATION 1, T14P8.6, T14P8_6  gene PMS1  function Encodes a protein similar to PMS1 in yeast, a member of the family of eukaryotic MutL homologs. The protein appears to play a role in DNA mismatch repair and in the suppression of somatic homeologous recombination.  go_function ATP binding|GO:0005524||IEA  go_function mismatched DNA binding|GO:0030983||IEA  go_component nucleus|GO:0005634|19115045|IC  go_process mismatch repair|GO:0006298|15604748|IMP  go_process mismatch repair|GO:0006298||ISS  go_process DNA recombination|GO:0006310|19115045|IMP  go_process pollen development|GO:0009555|19115045|IMP  go_process fruit development|GO:0010154|19115045|IMP  go_process seed development|GO:0048316|19115045|IMP  go_function ATP binding|GO:0005524||ISS  product PMS1 (POSTMEIOTIC SEGREGATION 1); ATP binding / mismatched DNA binding  note POSTMEIOTIC SEGREGATION 1 (PMS1); FUNCTIONS IN: mismatched DNA binding, ATP binding; INVOLVED IN: mismatch repair, fruit development, seed development, DNA recombination, pollen development; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair, conserved site (InterPro:IPR014762), ATP-binding region, ATPase-like (InterPro:IPR003594), DNA mismatch repair protein, C-terminal (InterPro:IPR013507), MutL, C-terminal, dimerisation (InterPro:IPR014790), DNA mismatch repair protein, N-terminal (InterPro:IPR014763), DNA mismatch repair protein (InterPro:IPR002099), Post Meiotic Segregation 2 (InterPro:IPR015434), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721); BEST Arabidopsis thaliana protein match is: MLH1 (MUTL-HOMOLOGUE 1); protein binding, bridging (TAIR:AT4G09140.1); Has 6465 Blast hits to 4590 proteins in 1312 species: Archae - 82; Bacteria - 4004; Metazoa - 500; Fungi - 433; Plants - 71; Viruses - 0; Other Eukaryotes - 1375 (source: NCBI BLink).  protein_id AT4G02460.1p  transcript_id AT4G02460.1  protein_id AT4G02460.1p  transcript_id AT4G02460.1  
At4g02465	chr4:001080962	0.0	W/1080962-1081017,1081177-1081342,1081389-1081437,1081526-1081680	AT4G02465.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G02465.1p  transcript_id AT4G02465.1  protein_id AT4G02465.1p  transcript_id AT4G02465.1  
At4g02480	chr4:001088543	0.0	C/1088543-1088680,1088197-1088428,1088020-1088111,1087769-1087882,1087554-1087700,1086734-1087413,1086514-1086638,1086321-1086412,1085683-1085905,1085531-1085594,1085287-1085435,1085135-1085205,1084882-1085055,1084704-1084775,1084456-1084557,1084289-1084378,1084117-1084192,1083935-1084031,1083786-1083855,1083523-1083702,1083315-1083437,1083148-1083231,1082858-1083042,1082628-1082766,1082488-1082547,1082279-1082383,1082082-1082195	AT4G02480.1  CDS  gene_syn AT4G02470, T14P8.8, T14P8_8  go_component chloroplast|GO:0009507||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATPase activity|GO:0016887||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), SMAD/FHA domain (InterPro:IPR008984), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G02890.1); Has 26189 Blast hits to 22283 proteins in 1802 species: Archae - 938; Bacteria - 7842; Metazoa - 4073; Fungi - 2409; Plants - 1486; Viruses - 27; Other Eukaryotes - 9414 (source: NCBI BLink).  protein_id AT4G02480.1p  transcript_id AT4G02480.1  protein_id AT4G02480.1p  transcript_id AT4G02480.1  
At4g02482	chr4:001092002	0.0	W/1092002-1092110,1092189-1092484	AT4G02482.1  CDS  go_component chloroplast outer membrane|GO:0009707||ISS  go_process biological_process|GO:0008150||ND  go_function GTP binding|GO:0005525||ISS  product chloroplast outer envelope GTP-binding protein, putative  note chloroplast outer envelope GTP-binding protein, putative; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast outer membrane; BEST Arabidopsis thaliana protein match is: TOC159 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 159); transmembrane receptor (TAIR:AT4G02510.1); Has 63 Blast hits to 63 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G02482.1p  transcript_id AT4G02482.1  protein_id AT4G02482.1p  transcript_id AT4G02482.1  
At4g02485	chr4:001092695	0.0	W/1092695-1092899,1092993-1093024,1093451-1093609,1094153-1094437	AT4G02485.1  CDS  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT1G31600.3); Has 348 Blast hits to 347 proteins in 118 species: Archae - 0; Bacteria - 67; Metazoa - 145; Fungi - 24; Plants - 40; Viruses - 3; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT4G02485.1p  transcript_id AT4G02485.1  protein_id AT4G02485.1p  transcript_id AT4G02485.1  
At4g02487	chr4:001094945	0.0	C/1094945-1095226	AT4G02487.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.2e-30 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea)  
At4g02489	chr4:001097532	0.0	C/1097532-1097645	AT4G02489.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G02489.1p  transcript_id AT4G02489.1  protein_id AT4G02489.1p  transcript_id AT4G02489.1  
At4g02490	chr4:001097945	0.0	C/1097945-1100011	AT4G02490.1  mRNA_TE_gene  pseudo  gene_syn T10P11.21  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.3e-36 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)  
At4g02500	chr4:001101638	0.0	W/1101638-1102648,1102971-1103345	AT4G02500.1  CDS  gene_syn ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, ATXT2, T10P11.20, UDP-XYLOSYLTRANSFERASE 2, XT2, XXT2, XYG XYLOSYLTRANSFERASE 2  gene XT2  function Encodes a protein with xylosyltransferase activity, which is specific for UDP-xylose as donor substrate and for oligosaccharides with a degree of polymerization >4. Although the enzyme utilizes either cellopentaose or cellohexaose, its activity is four-fold higher with cellohexaose as an acceptor compared to cellopentaose. The enzyme is able to add several xylosyl residues to the acceptor forming mono-, di- and trixylosylated polysaccharides.  go_component mitochondrion|GO:0005739||IEA  go_component integral to membrane|GO:0016021||IEA  go_process polysaccharide biosynthetic process|GO:0000271|16982611|IDA  go_process xyloglucan biosynthetic process|GO:0009969|18544630|IGI  go_process root hair elongation|GO:0048767|18544630|IGI  go_function transferase activity|GO:0016740||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function xyloglucan 6-xylosyltransferase activity|GO:0033843|18544630|IGI  go_function UDP-xylosyltransferase activity|GO:0035252|16982611|IDA  product XT2 (UDP-XYLOSYLTRANSFERASE 2); UDP-xylosyltransferase/ transferase/ transferase, transferring glycosyl groups / xyloglucan 6-xylosyltransferase  note UDP-XYLOSYLTRANSFERASE 2 (XT2); FUNCTIONS IN: xyloglucan 6-xylosyltransferase activity, UDP-xylosyltransferase activity, transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: polysaccharide biosynthetic process, xyloglucan biosynthetic process, root hair elongation; LOCATED IN: mitochondrion, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galactosyl transferase (InterPro:IPR008630); BEST Arabidopsis thaliana protein match is: XT1 (XYLOSYLTRANSFERASE 1); UDP-xylosyltransferase/ transferase/ transferase, transferring glycosyl groups / xyloglucan 6-xylosyltransferase (TAIR:AT3G62720.2); Has 306 Blast hits to 306 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 121; Plants - 173; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT4G02500.1p  transcript_id AT4G02500.1  protein_id AT4G02500.1p  transcript_id AT4G02500.1  
At4g02510	chr4:001104766	0.0	W/1104766-1104829,1104913-1109360	AT4G02510.1  CDS  gene_syn ATTOC159, PLASTID PROTEIN IMPORT 2, PPI2, T10P11.19, TOC159, TOC160, TOC86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 159, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86  gene TOC159  function An integral membrane GTPase that functions as a transit-sequence receptor required for the import of proteins necessary for chloroplast biogenesis. Located in the outer chloroplast membrane.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component plastid|GO:0009536|16618929|IDA  go_component chloroplast outer membrane|GO:0009707|10646606|IDA  go_process protein targeting to chloroplast|GO:0045036|10646606|IDA  go_process protein targeting to chloroplast|GO:0045036|15842619|IMP  go_function transmembrane receptor activity|GO:0004888|10646606|IDA  product TOC159 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 159); transmembrane receptor  note TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 159 (TOC159); FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: protein targeting to chloroplast; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chloroplast protein import component Toc86/159 (InterPro:IPR005690), AIG1 (InterPro:IPR006703); BEST Arabidopsis thaliana protein match is: TOC132 (MULTIMERIC TRANSLOCON COMPLEX IN THE OUTER ENVELOPE MEMBRANE 132); transmembrane receptor (TAIR:AT2G16640.1); Has 16949 Blast hits to 10945 proteins in 1035 species: Archae - 236; Bacteria - 4024; Metazoa - 5722; Fungi - 1935; Plants - 989; Viruses - 150; Other Eukaryotes - 3893 (source: NCBI BLink).  protein_id AT4G02510.1p  transcript_id AT4G02510.1  protein_id AT4G02510.1p  transcript_id AT4G02510.1  
At4g02520	chr4:001111382	0.0	C/1111382-1111531,1111224-1111272,1110673-1111112	AT4G02520.1  CDS  gene_syn ATGSTF2, ATPM24, ATPM24.1, GLUTATHIONE S-TRANSFERASE PHI 2, GST2, T10P11.18, T10P11_18  gene ATGSTF2  function Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process response to cadmium ion|GO:0046686|17075075|IEP  go_function glutathione binding|GO:0043295|15159623|IDA  go_component microsome|GO:0005792|8290582|IDA  go_component plasma membrane|GO:0005886|8290582|IDA  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_process response to cold|GO:0009409|14535880|IEP  go_function glutathione transferase activity|GO:0004364|8290582|IDA  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTF2 (GLUTATHIONE S-TRANSFERASE PHI 2); glutathione binding / glutathione transferase  note GLUTATHIONE S-TRANSFERASE PHI 2 (ATGSTF2); FUNCTIONS IN: glutathione transferase activity, glutathione binding; INVOLVED IN: response to cadmium ion, response to salt stress, response to cold, defense response to bacterium, toxin catabolic process; LOCATED IN: in 7 components; EXPRESSED IN: cotyledon, root, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTF3 (GLUTATHIONE S-TRANSFERASE F3); glutathione transferase (TAIR:AT2G02930.1); Has 9143 Blast hits to 9136 proteins in 931 species: Archae - 0; Bacteria - 4599; Metazoa - 1384; Fungi - 425; Plants - 722; Viruses - 0; Other Eukaryotes - 2013 (source: NCBI BLink).  protein_id AT4G02520.1p  transcript_id AT4G02520.1  protein_id AT4G02520.1p  transcript_id AT4G02520.1  
At4g02530	chr4:001113678	0.0	C/1113678-1114005,1112797-1112936,1112554-1112626,1112335-1112444	AT4G02530.1  CDS  gene_syn T10P11.17, T10P11_17  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product chloroplast thylakoid lumen protein  note chloroplast thylakoid lumen protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 29 Blast hits to 29 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G02530.1p  transcript_id AT4G02530.1  protein_id AT4G02530.1p  transcript_id AT4G02530.1  
At4g02540	chr4:001117202	0.0	W/1117202-1119670	AT4G02540.1  CDS  gene_syn T10P11.27, T10P11_27  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT1G62030.1); Has 1223 Blast hits to 477 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 1; Plants - 1216; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G02540.1p  transcript_id AT4G02540.1  protein_id AT4G02540.1p  transcript_id AT4G02540.1  
At4g02541	chr4:001119849	0.0	C/1119849-1119989	AT4G02541.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G02541.1p  transcript_id AT4G02541.1  protein_id AT4G02541.1p  transcript_id AT4G02541.1  
At4g02550	chr4:001121276	0.0	C/1121276-1121629,1120622-1121191	AT4G02550.1  CDS  gene_syn T10P11.16, T10P11_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.1); Has 205 Blast hits to 176 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 9; Plants - 196; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G02550.1p  transcript_id AT4G02550.1  protein_id AT4G02550.1p  transcript_id AT4G02550.1  
At4g02550	chr4:001121276	0.0	C/1121276-1121629,1121104-1121191,1120622-1121016	AT4G02550.2  CDS  gene_syn T10P11.16, T10P11_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.1); Has 194 Blast hits to 166 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 9; Plants - 185; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G02550.2p  transcript_id AT4G02550.2  protein_id AT4G02550.2p  transcript_id AT4G02550.2  
At4g02550	chr4:001121276	0.0	C/1121276-1121674,1120622-1121191	AT4G02550.3  CDS  gene_syn T10P11.16, T10P11_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.1); Has 205 Blast hits to 176 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 9; Plants - 196; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G02550.3p  transcript_id AT4G02550.3  protein_id AT4G02550.3p  transcript_id AT4G02550.3  
At4g02555	chr4:001122603	0.0	W/1122603-1122678	AT4G02555.1  snoRNA  gene_syn 67047.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT4G02555.1  
At4g02560	chr4:001128088	0.0	C/1128088-1128252,1127767-1127794,1127483-1127613,1126986-1127353,1126798-1126891,1126620-1126713,1126393-1126522,1126264-1126297,1126145-1126188,1125967-1126055,1125135-1125731,1124485-1124999,1123656-1124228	AT4G02560.1  CDS  gene_syn LD, T10P11.15, T10P11_15, luminidependens  gene LD  function Encodes a nuclear localized protein with similarity to transcriptional regulators. Recessive mutants are late flowering. Expression of LFY is reduced in LD mutants.  go_component nucleus|GO:0005634|10363371|IDA  go_component nucleus|GO:0005634|17138694|IDA  go_process positive regulation of flower development|GO:0009911||IMP  go_function transcription factor activity|GO:0003700|10363371|TAS  go_function transcription factor activity|GO:0003700|7907507|TAS  product LD (luminidependens); transcription factor  note luminidependens (LD); FUNCTIONS IN: transcription factor activity; INVOLVED IN: positive regulation of flower development; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); Has 934 Blast hits to 779 proteins in 104 species: Archae - 0; Bacteria - 8; Metazoa - 322; Fungi - 51; Plants - 318; Viruses - 0; Other Eukaryotes - 235 (source: NCBI BLink).  protein_id AT4G02560.1p  transcript_id AT4G02560.1  protein_id AT4G02560.1p  transcript_id AT4G02560.1  
At4g02570	chr4:001129315	0.0	W/1129315-1129445,1129532-1129631,1129806-1129991,1130074-1130121,1130211-1130414,1130503-1130580,1130781-1130870,1130953-1131033,1131156-1131215,1131296-1131325,1131430-1131516,1131608-1131757,1131831-1131886,1132073-1132193,1132286-1132447,1132533-1132676,1132759-1132977,1133077-1133244,1133334-1133435	AT4G02570.1  CDS  gene_syn ARABIDOPSIS THALIANA CULLIN 1, ATCUL1, AUXIN RESISTANT 6, AXR6, CUL1, CULLIN 1, T10P11.26, T10P11_26  gene ATCUL1  function Encodes a cullin that is a component of SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl. Heterozygotes display a variety of phenotypes consistent with impaired auxin response.  go_component ubiquitin ligase complex|GO:0000151|10398681|IPI  go_component condensed nuclear chromosome|GO:0000794|12058059|IDA  go_component nucleus|GO:0005634|11387208|IDA  go_component cytoplasm|GO:0005737|12058059|IDA  go_component spindle|GO:0005819|11387208|IDA  go_component phragmoplast|GO:0009524|11387208|IDA  go_process cell cycle|GO:0007049||ISS  go_process response to auxin stimulus|GO:0009733|10654597|IMP  go_process response to jasmonic acid stimulus|GO:0009753|15860010|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|10654597|IMP  go_process jasmonic acid mediated signaling pathway|GO:0009867|15860010|TAS  go_process SCF complex assembly|GO:0010265|15860010|IPI  go_process regulation of circadian rhythm|GO:0042752|18433436|IMP  go_function protein binding|GO:0005515|15659098|IPI  product ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein binding  note ARABIDOPSIS THALIANA CULLIN 1 (ATCUL1); FUNCTIONS IN: protein binding; INVOLVED IN: in 7 processes; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Cullin homology (InterPro:IPR016158), Cullin, N-terminal region (InterPro:IPR001373), Cullin, conserved site (InterPro:IPR016157), Cullin repeat-like (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: CUL2 (CULLIN 2); ubiquitin protein ligase binding (TAIR:AT1G02980.1); Has 1654 Blast hits to 1628 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 807; Fungi - 323; Plants - 198; Viruses - 0; Other Eukaryotes - 326 (source: NCBI BLink).  protein_id AT4G02570.1p  transcript_id AT4G02570.1  protein_id AT4G02570.1p  transcript_id AT4G02570.1  
At4g02570	chr4:001129315	0.0	W/1129315-1129445,1129532-1129631,1129806-1129991,1130074-1130121,1130211-1130414,1130503-1130580,1130781-1130870,1130953-1131033,1131156-1131215,1131296-1131325,1131430-1131516,1131608-1131757,1131831-1131886,1132073-1132193,1132286-1132447,1132533-1132676,1132759-1132977,1133077-1133244,1133334-1133435	AT4G02570.2  CDS  gene_syn ARABIDOPSIS THALIANA CULLIN 1, ATCUL1, AUXIN RESISTANT 6, AXR6, CUL1, CULLIN 1, T10P11.26, T10P11_26  gene ATCUL1  function Encodes a cullin that is a component of SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl. Heterozygotes display a variety of phenotypes consistent with impaired auxin response.  go_component ubiquitin ligase complex|GO:0000151|10398681|IPI  go_component condensed nuclear chromosome|GO:0000794|12058059|IDA  go_component nucleus|GO:0005634|11387208|IDA  go_component cytoplasm|GO:0005737|12058059|IDA  go_component spindle|GO:0005819|11387208|IDA  go_component phragmoplast|GO:0009524|11387208|IDA  go_process cell cycle|GO:0007049||ISS  go_process response to auxin stimulus|GO:0009733|10654597|IMP  go_process response to jasmonic acid stimulus|GO:0009753|15860010|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|10654597|IMP  go_process jasmonic acid mediated signaling pathway|GO:0009867|15860010|TAS  go_process SCF complex assembly|GO:0010265|15860010|IPI  go_process regulation of circadian rhythm|GO:0042752|18433436|IMP  go_function protein binding|GO:0005515|15659098|IPI  product ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein binding  note ARABIDOPSIS THALIANA CULLIN 1 (ATCUL1); FUNCTIONS IN: protein binding; INVOLVED IN: in 7 processes; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Cullin homology (InterPro:IPR016158), Cullin, N-terminal region (InterPro:IPR001373), Cullin, conserved site (InterPro:IPR016157), Cullin repeat-like (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: CUL2 (CULLIN 2); ubiquitin protein ligase binding (TAIR:AT1G02980.1); Has 1654 Blast hits to 1628 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 807; Fungi - 323; Plants - 198; Viruses - 0; Other Eukaryotes - 326 (source: NCBI BLink).  protein_id AT4G02570.2p  transcript_id AT4G02570.2  protein_id AT4G02570.2p  transcript_id AT4G02570.2  
At4g02570	chr4:001129315	0.0	W/1129315-1129445,1129532-1129631,1129806-1129991,1130074-1130121,1130211-1130414,1130503-1130580,1130781-1130870,1130953-1131033,1131156-1131215,1131296-1131325,1131430-1131516,1131608-1131757,1131831-1131886,1132073-1132193,1132286-1132447,1132533-1132676,1132759-1132977,1133077-1133244,1133334-1133435	AT4G02570.3  CDS  gene_syn ARABIDOPSIS THALIANA CULLIN 1, ATCUL1, AUXIN RESISTANT 6, AXR6, CUL1, CULLIN 1, T10P11.26, T10P11_26  gene ATCUL1  function Encodes a cullin that is a component of SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl. Heterozygotes display a variety of phenotypes consistent with impaired auxin response.  go_component ubiquitin ligase complex|GO:0000151|10398681|IPI  go_component condensed nuclear chromosome|GO:0000794|12058059|IDA  go_component nucleus|GO:0005634|11387208|IDA  go_component cytoplasm|GO:0005737|12058059|IDA  go_component spindle|GO:0005819|11387208|IDA  go_component phragmoplast|GO:0009524|11387208|IDA  go_process cell cycle|GO:0007049||ISS  go_process response to auxin stimulus|GO:0009733|10654597|IMP  go_process response to jasmonic acid stimulus|GO:0009753|15860010|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|10654597|IMP  go_process jasmonic acid mediated signaling pathway|GO:0009867|15860010|TAS  go_process SCF complex assembly|GO:0010265|15860010|IPI  go_process regulation of circadian rhythm|GO:0042752|18433436|IMP  go_function protein binding|GO:0005515|15659098|IPI  product ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein binding  note ARABIDOPSIS THALIANA CULLIN 1 (ATCUL1); FUNCTIONS IN: protein binding; INVOLVED IN: in 7 processes; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Cullin homology (InterPro:IPR016158), Cullin, N-terminal region (InterPro:IPR001373), Cullin, conserved site (InterPro:IPR016157), Cullin repeat-like (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: CUL2 (CULLIN 2); ubiquitin protein ligase binding (TAIR:AT1G02980.1); Has 1654 Blast hits to 1628 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 807; Fungi - 323; Plants - 198; Viruses - 0; Other Eukaryotes - 326 (source: NCBI BLink).  protein_id AT4G02570.3p  transcript_id AT4G02570.3  protein_id AT4G02570.3p  transcript_id AT4G02570.3  
At4g02580	chr4:001134586	0.0	W/1134586-1134654,1134740-1134772,1134880-1134945,1135576-1135692,1135827-1135904,1135994-1136099,1136191-1136237,1136350-1136427,1136544-1136609,1136799-1136906	AT4G02580.1  CDS  gene_syn T10P11.14, T10P11_14  go_component mitochondrion|GO:0005739|18385124|IDA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|12837548|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process mitochondrial electron transport, NADH to ubiquinone|GO:0006120||ISS  go_process response to oxidative stress|GO:0006979|12492832|IDA  go_function NADH dehydrogenase (ubiquinone) activity|GO:0008137||ISS  product NADH-ubiquinone oxidoreductase 24 kDa subunit, putative  note NADH-ubiquinone oxidoreductase 24 kDa subunit, putative; FUNCTIONS IN: electron carrier activity, NAD or NADH binding, oxidoreductase activity, NADH dehydrogenase (ubiquinone) activity; INVOLVED IN: response to oxidative stress, mitochondrial electron transport, NADH to ubiquinone; LOCATED IN: mitochondrion, respiratory chain complex I; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), NADH dehydrogenase (ubiquinone), 24 kDa subunit (InterPro:IPR002023), Thioredoxin-like fold (InterPro:IPR012336); Has 4003 Blast hits to 4003 proteins in 890 species: Archae - 12; Bacteria - 1956; Metazoa - 160; Fungi - 76; Plants - 28; Viruses - 0; Other Eukaryotes - 1771 (source: NCBI BLink).  protein_id AT4G02580.1p  transcript_id AT4G02580.1  protein_id AT4G02580.1p  transcript_id AT4G02580.1  
At4g02590	chr4:001139944	0.0	C/1139944-1140117,1139417-1139539,1139187-1139252,1139035-1139100,1138280-1138360,1137968-1138201	AT4G02590.3  CDS  gene_syn T10P11.13, T10P11_13, UNE12, unfertilized embryo sac 12  gene UNE12  go_component nucleus|GO:0005634||IEA  go_process double fertilization forming a zygote and endosperm|GO:0009567|15634699|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product UNE12 (unfertilized embryo sac 12); DNA binding / transcription factor  note unfertilized embryo sac 12 (UNE12); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: double fertilization forming a zygote and endosperm, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT1G03040.1); Has 1615 Blast hits to 1615 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 1; Plants - 1603; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G02590.3p  transcript_id AT4G02590.3  protein_id AT4G02590.3p  transcript_id AT4G02590.3  
At4g02590	chr4:001139944	0.0	C/1139944-1140306,1139417-1139539,1139187-1139252,1139035-1139100,1138280-1138360,1137968-1138201	AT4G02590.1  CDS  gene_syn T10P11.13, T10P11_13, UNE12, unfertilized embryo sac 12  gene UNE12  go_component nucleus|GO:0005634||IEA  go_process double fertilization forming a zygote and endosperm|GO:0009567|15634699|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product UNE12 (unfertilized embryo sac 12); DNA binding / transcription factor  note unfertilized embryo sac 12 (UNE12); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: double fertilization forming a zygote and endosperm, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT1G03040.1); Has 1644 Blast hits to 1644 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 3; Plants - 1615; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G02590.1p  transcript_id AT4G02590.1  protein_id AT4G02590.1p  transcript_id AT4G02590.1  
At4g02590	chr4:001139944	0.0	C/1139944-1140306,1139417-1139539,1139187-1139252,1139035-1139100,1138280-1138360,1137968-1138201	AT4G02590.2  CDS  gene_syn T10P11.13, T10P11_13, UNE12, unfertilized embryo sac 12  gene UNE12  go_component nucleus|GO:0005634||IEA  go_process double fertilization forming a zygote and endosperm|GO:0009567|15634699|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product UNE12 (unfertilized embryo sac 12); DNA binding / transcription factor  note unfertilized embryo sac 12 (UNE12); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: double fertilization forming a zygote and endosperm, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT1G03040.1); Has 1644 Blast hits to 1644 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 3; Plants - 1615; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G02590.2p  transcript_id AT4G02590.2  protein_id AT4G02590.2p  transcript_id AT4G02590.2  
At4g02600	chr4:001144141	0.0	W/1144141-1144321,1144817-1145070,1145173-1145289,1145385-1145445,1145516-1145613,1145706-1145780,1145875-1146013,1146127-1146167,1146267-1146476,1146558-1146625,1146724-1146784,1146881-1147156	AT4G02600.1  CDS  gene_syn ATMLO1, MILDEW RESISTANCE LOCUS O 1, MLO1, T10P11.12, T10P11_12  gene MLO1  function A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO1 belongs to the clade II, with ATMLO13 and ATMLO15. The gene is expressed during early seedling growth, in root and cotyledon vascular system, in pollen and in papillae, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_process cell death|GO:0008219||IEA  go_component plasma membrane|GO:0005886||ISS  go_process defense response|GO:0006952||ISS  go_process cell death|GO:0008219||ISS  go_function calmodulin binding|GO:0005516||ISS  product MLO1; calmodulin binding  note MLO1; FUNCTIONS IN: calmodulin binding; INVOLVED IN: cell death, defense response; LOCATED IN: plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326); BEST Arabidopsis thaliana protein match is: MLO15 (MILDEW RESISTANCE LOCUS O 15); calmodulin binding (TAIR:AT2G44110.2); Has 305 Blast hits to 295 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 301; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G02600.1p  transcript_id AT4G02600.1  protein_id AT4G02600.1p  transcript_id AT4G02600.1  
At4g02600	chr4:001144141	0.0	W/1144141-1144321,1144817-1145070,1145173-1145289,1145385-1145445,1145516-1145613,1145706-1145780,1145875-1146013,1146127-1146167,1146267-1146476,1146558-1146625,1146724-1146784,1146881-1147156	AT4G02600.2  CDS  gene_syn ATMLO1, MILDEW RESISTANCE LOCUS O 1, MLO1, T10P11.12, T10P11_12  gene MLO1  function A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO1 belongs to the clade II, with ATMLO13 and ATMLO15. The gene is expressed during early seedling growth, in root and cotyledon vascular system, in pollen and in papillae, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).  go_component plasma membrane|GO:0005886|14506206|IDA  go_process cell death|GO:0008219||IEA  go_component plasma membrane|GO:0005886||ISS  go_process defense response|GO:0006952||ISS  go_process cell death|GO:0008219||ISS  go_function calmodulin binding|GO:0005516||ISS  product MLO1; calmodulin binding  note MLO1; FUNCTIONS IN: calmodulin binding; INVOLVED IN: cell death, defense response; LOCATED IN: plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326); BEST Arabidopsis thaliana protein match is: MLO15 (MILDEW RESISTANCE LOCUS O 15); calmodulin binding (TAIR:AT2G44110.2); Has 305 Blast hits to 295 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 301; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G02600.2p  transcript_id AT4G02600.2  protein_id AT4G02600.2p  transcript_id AT4G02600.2  
At4g02610	chr4:001147662	0.0	W/1147662-1147736,1147834-1147980,1148051-1148116,1148270-1148378,1148512-1148588,1148683-1148760,1148859-1148996,1149080-1149217	AT4G02610.1  CDS  gene_syn T10P11.11, T10P11_11  go_component chloroplast|GO:0009507|7890741|IDA  go_process tryptophan biosynthetic process|GO:0000162|7476868|TAS  go_function tryptophan synthase activity|GO:0004834|7476868|IGI  product tryptophan synthase, alpha subunit, putative  note tryptophan synthase, alpha subunit, putative; FUNCTIONS IN: tryptophan synthase activity; INVOLVED IN: tryptophan biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tryptophan synthase, alpha chain, active site (InterPro:IPR018204), Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060), Tryptophan synthase, alpha chain (InterPro:IPR002028); BEST Arabidopsis thaliana protein match is: TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN); tryptophan synthase (TAIR:AT3G54640.1); Has 5594 Blast hits to 5594 proteins in 1308 species: Archae - 161; Bacteria - 2662; Metazoa - 5; Fungi - 121; Plants - 97; Viruses - 0; Other Eukaryotes - 2548 (source: NCBI BLink).  protein_id AT4G02610.1p  transcript_id AT4G02610.1  protein_id AT4G02610.1p  transcript_id AT4G02610.1  
At4g02620	chr4:001151070	0.0	C/1151070-1151132,1150332-1150413,1149996-1150078,1149419-1149577	AT4G02620.1  CDS  gene_syn T10P11.25, T10P11_25, VHA -F  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_function hydrogen ion transporting ATP synthase activity, rotational mechanism|GO:0046933||IEA  go_function proton-transporting ATPase activity, rotational mechanism|GO:0046961||IEA  product vacuolar ATPase subunit F family protein  note vacuolar ATPase subunit F family protein; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, V1 complex, subunit F, eukaryotic (InterPro:IPR005772), ATPase, V1/A1 complex, subunit F (InterPro:IPR008218); Has 383 Blast hits to 383 proteins in 165 species: Archae - 24; Bacteria - 0; Metazoa - 178; Fungi - 84; Plants - 34; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT4G02620.1p  transcript_id AT4G02620.1  protein_id AT4G02620.1p  transcript_id AT4G02620.1  
At4g02630	chr4:001151683	0.0	W/1151683-1153161	AT4G02630.1  CDS  gene_syn T10P11.10, T10P11_10  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G01540.2); Has 85264 Blast hits to 84253 proteins in 3188 species: Archae - 48; Bacteria - 7988; Metazoa - 37780; Fungi - 6339; Plants - 18388; Viruses - 380; Other Eukaryotes - 14341 (source: NCBI BLink).  protein_id AT4G02630.1p  transcript_id AT4G02630.1  protein_id AT4G02630.1p  transcript_id AT4G02630.1  
At4g02640	chr4:001154031	0.0	W/1154031-1154441,1154530-1154611,1154958-1155144,1155226-1155301,1155378-1155503,1155593-1155942,1156064-1156085	AT4G02640.2  CDS  gene_syn ATBZIP10, Arabidopsis thaliana basic leucine zipper 10, BZO2H1  gene BZO2H1  function Encodes a basic leucine zipper (bZIP) transcription factor AtbZIP10. AtbZIP10 shuttles between the nucleus and the cytoplasm. It binds consensus G- and C-box DNA sequences. AtbZIP10 acts antagonistically with LSD1 in both pathogen-induced hypersensitive response and basal defense responses.  go_component cytoplasm|GO:0005737|16957775|IDA  go_process response to molecule of oomycetes origin|GO:0002240|16957775|IMP  go_process plant-type hypersensitive response|GO:0009626|16957775|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700|16810321|IDA  go_function sequence-specific DNA binding|GO:0043565|16810321|IDA  go_function protein heterodimerization activity|GO:0046982|16709202|IPI  product BZO2H1; DNA binding / protein heterodimerization/ sequence-specific DNA binding / transcription factor  note BZO2H1; FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding, protein heterodimerization activity, DNA binding; INVOLVED IN: plant-type hypersensitive response, response to molecule of oomycetes origin; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: BZIP25 (BASIC LEUCINE ZIPPER 25); protein heterodimerization/ transcription factor (TAIR:AT3G54620.1); Has 1645 Blast hits to 1637 proteins in 161 species: Archae - 0; Bacteria - 3; Metazoa - 239; Fungi - 85; Plants - 1231; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).  protein_id AT4G02640.2p  transcript_id AT4G02640.2  protein_id AT4G02640.2p  transcript_id AT4G02640.2  
At4g02640	chr4:001154031	0.0	W/1154031-1154441,1154530-1154611,1154976-1155144,1155226-1155301,1155378-1155503,1155593-1155942,1156064-1156085	AT4G02640.1  CDS  gene_syn ATBZIP10, Arabidopsis thaliana basic leucine zipper 10, BZO2H1  gene BZO2H1  function Encodes a basic leucine zipper (bZIP) transcription factor AtbZIP10. AtbZIP10 shuttles between the nucleus and the cytoplasm. It binds consensus G- and C-box DNA sequences. AtbZIP10 acts antagonistically with LSD1 in both pathogen-induced hypersensitive response and basal defense responses.  go_component cytoplasm|GO:0005737|16957775|IDA  go_process response to molecule of oomycetes origin|GO:0002240|16957775|IMP  go_process plant-type hypersensitive response|GO:0009626|16957775|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700|16810321|IDA  go_function sequence-specific DNA binding|GO:0043565|16810321|IDA  go_function protein heterodimerization activity|GO:0046982|16709202|IPI  product BZO2H1; DNA binding / protein heterodimerization/ sequence-specific DNA binding / transcription factor  note BZO2H1; FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding, protein heterodimerization activity, DNA binding; INVOLVED IN: plant-type hypersensitive response, response to molecule of oomycetes origin; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: BZIP25 (BASIC LEUCINE ZIPPER 25); protein heterodimerization/ transcription factor (TAIR:AT3G54620.1); Has 1659 Blast hits to 1649 proteins in 165 species: Archae - 0; Bacteria - 9; Metazoa - 227; Fungi - 86; Plants - 1233; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT4G02640.1p  transcript_id AT4G02640.1  protein_id AT4G02640.1p  transcript_id AT4G02640.1  
At4g02650	chr4:001156539	0.0	W/1156539-1157223,1157302-1158165,1158257-1158543	AT4G02650.1  CDS  gene_syn T10P11.8, T10P11_8  go_component clathrin coat|GO:0030118||IEA  go_process clathrin coat assembly|GO:0048268||IEA  go_function phospholipid binding|GO:0005543||IEA  go_function phosphatidylinositol binding|GO:0005545||IEA  go_function clathrin binding|GO:0030276||IEA  go_function binding|GO:0005488||ISS  product epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related  note epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related; FUNCTIONS IN: phospholipid binding, clathrin binding, binding, phosphatidylinositol binding; INVOLVED IN: clathrin coat assembly; LOCATED IN: clathrin coat; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942), Clathrin adaptor, phosphoinositide-binding, GAT-like (InterPro:IPR014712); BEST Arabidopsis thaliana protein match is: epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (TAIR:AT1G03050.1); Has 1409 Blast hits to 1209 proteins in 171 species: Archae - 6; Bacteria - 35; Metazoa - 737; Fungi - 146; Plants - 220; Viruses - 6; Other Eukaryotes - 259 (source: NCBI BLink).  protein_id AT4G02650.1p  transcript_id AT4G02650.1  protein_id AT4G02650.1p  transcript_id AT4G02650.1  
At4g02655	chr4:001158876	0.0	W/1158876-1159241	AT4G02655.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G18486.1); Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G02655.1p  transcript_id AT4G02655.1  protein_id AT4G02655.1p  transcript_id AT4G02655.1  
At4g02660	chr4:001173607	0.0	C/1173607-1173791,1173448-1173520,1173238-1173323,1172850-1172985,1172704-1172760,1172344-1172466,1171992-1172183,1171783-1171848,1171118-1171232,1169748-1170958,1168834-1169533,1168613-1168715,1167830-1168511,1167400-1167682,1165663-1167319,1162406-1165375,1161901-1162209,1161443-1161749,1161214-1161360,1160164-1161108,1159667-1159735	AT4G02660.1  CDS  gene_syn T10P11.5, T10P11_5  go_component chloroplast|GO:0009507|18431481|IDA  go_function binding|GO:0005488||IEA  go_process signal transduction|GO:0007165||ISS  product WD-40 repeat family protein / beige-related  note WD-40 repeat family protein / beige-related; FUNCTIONS IN: binding; INVOLVED IN: signal transduction; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Beige/BEACH (InterPro:IPR000409), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein / beige-related (TAIR:AT1G03060.1); Has 5849 Blast hits to 4353 proteins in 269 species: Archae - 8; Bacteria - 956; Metazoa - 2990; Fungi - 677; Plants - 315; Viruses - 0; Other Eukaryotes - 903 (source: NCBI BLink).  protein_id AT4G02660.1p  transcript_id AT4G02660.1  protein_id AT4G02660.1p  transcript_id AT4G02660.1  
At4g02670	chr4:001178303	0.0	C/1178303-1178489,1177667-1178066,1176190-1176811	AT4G02670.1  CDS  gene_syn Arabidopsis thaliana Indeterminate(ID)-Domain 12, AtIDD12, T10P11.4, T10P11_4  gene AtIDD12  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product AtIDD12 (Arabidopsis thaliana Indeterminate(ID)-Domain 12); nucleic acid binding / transcription factor/ zinc ion binding  note Arabidopsis thaliana Indeterminate(ID)-Domain 12 (AtIDD12); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: shoot apex, embryo, pedicel, flower, seed; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: MGP (Magpie); nucleic acid binding / protein binding / transcription factor/ zinc ion binding (TAIR:AT1G03840.1); Has 38646 Blast hits to 15490 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 37038; Fungi - 163; Plants - 387; Viruses - 0; Other Eukaryotes - 1058 (source: NCBI BLink).  protein_id AT4G02670.1p  transcript_id AT4G02670.1  protein_id AT4G02670.1p  transcript_id AT4G02670.1  
At4g02680	chr4:001184213	0.0	C/1184213-1184328,1182412-1184139,1182048-1182339,1181533-1181842,1181202-1181422	AT4G02680.1  CDS  gene_syn EOL1, ETO1-LIKE 1, T10P11.24, T10P11_24  gene EOL1  function Encodes a paralog of ETO1, which is a negative regulator of ACS5 (a key enzyme in ethylene biosynthesis pathway). EOL1 also interacts with and inhibits the activity of ACS5.  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of ethylene biosynthetic process|GO:0010364|15118728|IDA  product EOL1 (ETO1-LIKE 1); binding / protein binding  note ETO1-LIKE 1 (EOL1); FUNCTIONS IN: protein binding, binding; INVOLVED IN: regulation of ethylene biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: ETO1 (ETHYLENE OVERPRODUCER 1); protein binding, bridging (TAIR:AT3G51770.2); Has 468 Blast hits to 419 proteins in 109 species: Archae - 8; Bacteria - 160; Metazoa - 135; Fungi - 2; Plants - 74; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT4G02680.1p  transcript_id AT4G02680.1  protein_id AT4G02680.1p  transcript_id AT4G02680.1  
At4g02690	chr4:001186023	0.0	W/1186023-1186290,1186403-1186516,1186680-1186837,1187328-1187534	AT4G02690.1  CDS  gene_syn T10P11.23, T10P11_23  go_function glutamate binding|GO:0016595||ISS  product glutamate binding  note glutamate binding; FUNCTIONS IN: glutamate binding; EXPRESSED IN: embryo, hypocotyl; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0005 (InterPro:IPR006214); BEST Arabidopsis thaliana protein match is: glutamate binding (TAIR:AT1G03070.1); Has 3271 Blast hits to 3271 proteins in 813 species: Archae - 0; Bacteria - 1455; Metazoa - 699; Fungi - 88; Plants - 124; Viruses - 54; Other Eukaryotes - 851 (source: NCBI BLink).  protein_id AT4G02690.1p  transcript_id AT4G02690.1  protein_id AT4G02690.1p  transcript_id AT4G02690.1  
At4g02700	chr4:001189062	0.0	W/1189062-1189380,1189657-1189864,1190648-1190819,1190903-1190968,1191065-1191178,1191401-1191517,1191599-1191725,1191983-1192269,1192348-1192538,1192640-1192725,1192930-1193006,1193149-1193325	AT4G02700.1  CDS  gene_syn SULTR3;2, sulfate transporter 3;2  gene SULTR3;2  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process sulfate transport|GO:0008272||IEA  go_function sulfate transmembrane transporter activity|GO:0015116||ISS  product SULTR3;2 (sulfate transporter 3;2); sulfate transmembrane transporter  note sulfate transporter 3;2 (SULTR3;2); FUNCTIONS IN: sulfate transmembrane transporter activity; INVOLVED IN: sulfate transport, transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sulphate transporter (InterPro:IPR011547), Sulphate transporter/antisigma-factor antagonist STAS (InterPro:IPR002645), Sulphate anion transporter, conserved site (InterPro:IPR018045), Sulphate anion transporter (InterPro:IPR001902); BEST Arabidopsis thaliana protein match is: SULTR3;1 (SULFATE TRANSPORTER 3;1); secondary active sulfate transmembrane transporter/ sulfate transmembrane transporter/ transporter (TAIR:AT3G51895.1); Has 6707 Blast hits to 6650 proteins in 1091 species: Archae - 34; Bacteria - 3425; Metazoa - 985; Fungi - 298; Plants - 324; Viruses - 0; Other Eukaryotes - 1641 (source: NCBI BLink).  protein_id AT4G02700.1p  transcript_id AT4G02700.1  protein_id AT4G02700.1p  transcript_id AT4G02700.1  
At4g02710	chr4:001196959	0.0	C/1196959-1197061,1194576-1196857,1193516-1194466	AT4G02710.1  CDS  gene_syn T10P11.22, T10P11_22  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kinase interacting family protein  note kinase interacting family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: KIP1-like (InterPro:IPR011684); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03080.1); Has 88324 Blast hits to 43603 proteins in 1895 species: Archae - 997; Bacteria - 11047; Metazoa - 44810; Fungi - 6198; Plants - 3390; Viruses - 456; Other Eukaryotes - 21426 (source: NCBI BLink).  protein_id AT4G02710.1p  transcript_id AT4G02710.1  protein_id AT4G02710.1p  transcript_id AT4G02710.1  
At4g02715	chr4:001202170	0.0	C/1202170-1202787	AT4G02715.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 22 Blast hits to 22 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G02715.1p  transcript_id AT4G02715.1  protein_id AT4G02715.1p  transcript_id AT4G02715.1  
At4g02720	chr4:001204545	0.0	C/1204545-1205813	AT4G02720.1  CDS  gene_syn T5J8.1  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF926 (InterPro:IPR009269); Has 94634 Blast hits to 43088 proteins in 1394 species: Archae - 72; Bacteria - 10621; Metazoa - 45152; Fungi - 10187; Plants - 3989; Viruses - 718; Other Eukaryotes - 23895 (source: NCBI BLink).  protein_id AT4G02720.1p  transcript_id AT4G02720.1  protein_id AT4G02720.1p  transcript_id AT4G02720.1  
At4g02725	chr4:001206055	0.0	W/1206055-1206326,1206853-1206994,1207207-1207290	AT4G02725.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; Has 81 Blast hits to 81 proteins in 43 species: Archae - 0; Bacteria - 60; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G02725.1p  transcript_id AT4G02725.1  protein_id AT4G02725.1p  transcript_id AT4G02725.1  
At4g02725	chr4:001206055	0.0	W/1206055-1206326,1206853-1207000	AT4G02725.2  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; Has 81 Blast hits to 81 proteins in 43 species: Archae - 0; Bacteria - 60; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G02725.2p  transcript_id AT4G02725.2  protein_id AT4G02725.2p  transcript_id AT4G02725.2  
At4g02730	chr4:001207759	0.0	W/1207759-1208469,1208776-1209066	AT4G02730.1  CDS  gene_syn T5J8.2, T5J8_2  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G49660.1); Has 78608 Blast hits to 31153 proteins in 723 species: Archae - 58; Bacteria - 7156; Metazoa - 36882; Fungi - 14702; Plants - 7512; Viruses - 12; Other Eukaryotes - 12286 (source: NCBI BLink).  protein_id AT4G02730.1p  transcript_id AT4G02730.1  protein_id AT4G02730.1p  transcript_id AT4G02730.1  
At4g02733	chr4:001211201	0.0	C/1211201-1211512,1210952-1211127,1210678-1210851,1210464-1210574,1210173-1210305	AT4G02733.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02740.1); Has 156 Blast hits to 154 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 136; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G02733.1p  transcript_id AT4G02733.1  protein_id AT4G02733.1p  transcript_id AT4G02733.1  
At4g02740	chr4:001220520	0.0	C/1220520-1220834,1220131-1220306,1219847-1219954,1219325-1219435,1219034-1219122,1218838-1218959,1218678-1218742,1218511-1218583,1218366-1218428,1218213-1218274,1218052-1218120,1217756-1217942	AT4G02740.1  CDS  gene_syn T5J8.4, T5J8_4  product unknown protein  note CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02760.2); Has 1691 Blast hits to 1200 proteins in 170 species: Archae - 2; Bacteria - 109; Metazoa - 687; Fungi - 197; Plants - 199; Viruses - 23; Other Eukaryotes - 474 (source: NCBI BLink).  protein_id AT4G02740.1p  transcript_id AT4G02740.1  protein_id AT4G02740.1p  transcript_id AT4G02740.1  
At4g02750	chr4:001221116	0.0	C/1221116-1223461	AT4G02750.1  CDS  gene_syn T5J8.5, T5J8_5  go_component mitochondrion|GO:0005739||IEA  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; LOCATED IN: mitochondrion; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G09410.1); Has 18491 Blast hits to 5444 proteins in 177 species: Archae - 0; Bacteria - 2; Metazoa - 159; Fungi - 74; Plants - 17938; Viruses - 0; Other Eukaryotes - 318 (source: NCBI BLink).  protein_id AT4G02750.1p  transcript_id AT4G02750.1  protein_id AT4G02750.1p  transcript_id AT4G02750.1  
At4g02760	chr4:001227480	0.0	C/1227480-1227857,1227081-1227256,1226886-1226987,1226581-1226691,1226312-1226397,1226111-1226223,1225949-1226013,1225791-1225863,1225639-1225701,1225486-1225544,1225317-1225403,1224475-1224627,1224336-1224390	AT4G02760.1  CDS  gene_syn T5J8.6, T5J8_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02740.1); Has 3231 Blast hits to 948 proteins in 145 species: Archae - 0; Bacteria - 50; Metazoa - 1253; Fungi - 344; Plants - 69; Viruses - 27; Other Eukaryotes - 1488 (source: NCBI BLink).  protein_id AT4G02760.1p  transcript_id AT4G02760.1  protein_id AT4G02760.1p  transcript_id AT4G02760.1  
At4g02760	chr4:001227480	0.0	C/1227480-1227857,1227081-1227256,1226886-1226987,1226581-1226691,1226312-1226397,1226111-1226223,1225949-1226013,1225791-1225863,1225639-1225701,1225486-1225544,1225317-1225403,1224475-1224627,1224336-1224390	AT4G02760.2  CDS  gene_syn T5J8.6, T5J8_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02740.1); Has 3231 Blast hits to 948 proteins in 145 species: Archae - 0; Bacteria - 50; Metazoa - 1253; Fungi - 344; Plants - 69; Viruses - 27; Other Eukaryotes - 1488 (source: NCBI BLink).  protein_id AT4G02760.2p  transcript_id AT4G02760.2  protein_id AT4G02760.2p  transcript_id AT4G02760.2  
At4g02770	chr4:001229247	0.0	C/1229247-1229873	AT4G02770.1  CDS  gene_syn PSAD-1, PSI-D, photosystem I subunit D-1  gene PSAD-1  function Encodes a protein predicted by sequence similarity with spinach PsaD to be photosystem I reaction center subunit II (PsaD1)  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process photosynthesis|GO:0015979||IEA  go_component photosystem I reaction center|GO:0009538||ISS  go_component plastoglobule|GO:0010287|16414959|IDA  go_process photosynthesis|GO:0015979||ISS  go_function molecular_function|GO:0003674||ND  product PSAD-1 (photosystem I subunit D-1)  note photosystem I subunit D-1 (PSAD-1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I protein PsaD (InterPro:IPR003685); BEST Arabidopsis thaliana protein match is: PSAD-2 (photosystem I subunit D-2) (TAIR:AT1G03130.1); Has 445 Blast hits to 445 proteins in 113 species: Archae - 0; Bacteria - 121; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 1; Other Eukaryotes - 186 (source: NCBI BLink).  protein_id AT4G02770.1p  transcript_id AT4G02770.1  protein_id AT4G02770.1p  transcript_id AT4G02770.1  
At4g02780	chr4:001244670	0.0	C/1244670-1244766,1243776-1243847,1243578-1243660,1242988-1243294,1242551-1242734,1242138-1242352,1241896-1242016,1241704-1241816,1241395-1241621,1241067-1241182,1240611-1240709,1240093-1240347,1239030-1239165,1238358-1238534,1237881-1238087	AT4G02780.1  CDS  gene_syn ABC33, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, ATCPS1, ENT-COPALYL DIPHOSPHATE SYNTHETASE, GA REQUIRING 1, GA1, T5J8.9, T5J8_9  gene GA1  function Catalyzes the conversion of geranylgeranyl pyrophosphate (GGPP) to copalyl pyrophosphate (CPP) of gibberellin biosynthesis  go_component chloroplast|GO:0009507|7994182|IDA  go_component chloroplast|GO:0009507|7994182|TAS  go_process gibberellin biosynthetic process|GO:0009686|7994182|IDA  go_process gibberellin biosynthetic process|GO:0009686|7994182|IMP  go_process gibberellic acid mediated signaling|GO:0009740|7994182|TAS  go_function magnesium ion binding|GO:0000287|17384166|IDA  go_function ent-copalyl diphosphate synthase activity|GO:0009905|17384166|IDA  go_function ent-copalyl diphosphate synthase activity|GO:0009905|7994182|IDA  go_function ent-copalyl diphosphate synthase activity|GO:0009905|7994182|IMP  product GA1 (GA REQUIRING 1); ent-copalyl diphosphate synthase/ magnesium ion binding  note GA REQUIRING 1 (GA1); FUNCTIONS IN: ent-copalyl diphosphate synthase activity, magnesium ion binding; INVOLVED IN: gibberellin biosynthetic process, gibberellic acid mediated signaling; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: GA2 (GA REQUIRING 2); ent-kaurene synthase (TAIR:AT1G79460.1); Has 1244 Blast hits to 1241 proteins in 197 species: Archae - 0; Bacteria - 52; Metazoa - 0; Fungi - 43; Plants - 1146; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G02780.1p  transcript_id AT4G02780.1  protein_id AT4G02780.1p  transcript_id AT4G02780.1  
At4g02790	chr4:001247416	0.0	W/1247416-1247559,1247647-1247793,1247899-1248015,1248191-1248334,1248415-1248501,1248583-1248698,1248801-1248982,1249082-1249139,1249228-1249351	AT4G02790.1  CDS  gene_syn T5J8.11, T5J8_11  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_function GTP binding|GO:0005525||IEA  go_process biological_process|GO:0008150||ND  go_function GTP binding|GO:0005525||ISS  product GTP-binding family protein  note GTP-binding family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding (InterPro:IPR005289), GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: GTP-binding family protein (TAIR:AT2G41670.1); Has 6347 Blast hits to 6027 proteins in 1205 species: Archae - 72; Bacteria - 3880; Metazoa - 692; Fungi - 374; Plants - 122; Viruses - 0; Other Eukaryotes - 1207 (source: NCBI BLink).  protein_id AT4G02790.1p  transcript_id AT4G02790.1  protein_id AT4G02790.1p  transcript_id AT4G02790.1  
At4g02800	chr4:001250126	0.0	W/1250126-1250170,1250263-1250544,1250634-1250855,1250942-1251106,1251191-1251478	AT4G02800.1  CDS  gene_syn T5J8.12, T5J8_12  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30050.1); Has 2998 Blast hits to 2475 proteins in 233 species: Archae - 9; Bacteria - 141; Metazoa - 1235; Fungi - 189; Plants - 103; Viruses - 24; Other Eukaryotes - 1297 (source: NCBI BLink).  protein_id AT4G02800.1p  transcript_id AT4G02800.1  protein_id AT4G02800.1p  transcript_id AT4G02800.1  
At4g02810	chr4:001256253	0.0	W/1256253-1257068	AT4G02810.1  CDS  gene_syn T5J8.13, T5J8_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03170.1); Has 65617 Blast hits to 21082 proteins in 779 species: Archae - 112; Bacteria - 1974; Metazoa - 30414; Fungi - 6876; Plants - 3323; Viruses - 1720; Other Eukaryotes - 21198 (source: NCBI BLink).  protein_id AT4G02810.1p  transcript_id AT4G02810.1  protein_id AT4G02810.1p  transcript_id AT4G02810.1  
At4g02820	chr4:001258581	0.0	W/1258581-1258922,1259009-1260265	AT4G02820.1  CDS  gene_syn T5J8.14, T5J8_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G02150.1); Has 6981 Blast hits to 3279 proteins in 125 species: Archae - 0; Bacteria - 14; Metazoa - 76; Fungi - 59; Plants - 6627; Viruses - 0; Other Eukaryotes - 205 (source: NCBI BLink).  protein_id AT4G02820.1p  transcript_id AT4G02820.1  protein_id AT4G02820.1p  transcript_id AT4G02820.1  
At4g02830	chr4:001262447	0.0	W/1262447-1262542,1262640-1262729,1262881-1263037,1263593-1263682,1263811-1263932	AT4G02830.1  CDS  gene_syn T5J8.15, T5J8_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 34 Blast hits to 34 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G02830.1p  transcript_id AT4G02830.1  protein_id AT4G02830.1p  transcript_id AT4G02830.1  
At4g02840	chr4:001264726	0.0	W/1264726-1264739,1264864-1264940,1265902-1266093,1266186-1266253	AT4G02840.1  CDS  gene_syn T5J8.16, T5J8_16  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component nucleus|GO:0005634||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_function molecular_function|GO:0003674||ND  product small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative  note small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus, small nucleolar ribonucleoprotein complex, nucleus, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative (TAIR:AT3G07590.1); Has 856 Blast hits to 855 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 368; Fungi - 219; Plants - 122; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink).  protein_id AT4G02840.1p  transcript_id AT4G02840.1  protein_id AT4G02840.1p  transcript_id AT4G02840.1  
At4g02850	chr4:001268531	0.0	C/1268531-1268569,1267583-1267780,1267173-1267502,1266934-1267095,1266732-1266815,1266535-1266642	AT4G02850.1  CDS  gene_syn T5J8.17, T5J8_17  go_component endomembrane system|GO:0012505||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function catalytic activity|GO:0003824||IEA  go_process biosynthetic process|GO:0009058||ISS  go_function catalytic activity|GO:0003824||ISS  product phenazine biosynthesis PhzC/PhzF family protein  note phenazine biosynthesis PhzC/PhzF family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Phenazine biosynthesis PhzC/PhzF protein (InterPro:IPR003719); BEST Arabidopsis thaliana protein match is: phenazine biosynthesis PhzC/PhzF family protein (TAIR:AT1G03210.1); Has 2021 Blast hits to 2021 proteins in 589 species: Archae - 20; Bacteria - 1287; Metazoa - 97; Fungi - 50; Plants - 43; Viruses - 0; Other Eukaryotes - 524 (source: NCBI BLink).  protein_id AT4G02850.1p  transcript_id AT4G02850.1  protein_id AT4G02850.1p  transcript_id AT4G02850.1  
At4g02860	chr4:001270419	0.0	C/1270419-1270508,1270148-1270342,1269595-1269897,1269331-1269492,1269144-1269227,1268952-1269059	AT4G02860.1  CDS  gene_syn T5J8.18, T5J8_18  go_process biosynthetic process|GO:0009058||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process biosynthetic process|GO:0009058||ISS  go_function catalytic activity|GO:0003824||ISS  product catalytic  note catalytic; FUNCTIONS IN: catalytic activity; INVOLVED IN: biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phenazine biosynthesis PhzC/PhzF protein (InterPro:IPR003719); BEST Arabidopsis thaliana protein match is: phenazine biosynthesis PhzC/PhzF family protein (TAIR:AT1G03210.1); Has 2440 Blast hits to 2438 proteins in 667 species: Archae - 24; Bacteria - 1589; Metazoa - 100; Fungi - 81; Plants - 45; Viruses - 0; Other Eukaryotes - 601 (source: NCBI BLink).  protein_id AT4G02860.1p  transcript_id AT4G02860.1  protein_id AT4G02860.1p  transcript_id AT4G02860.1  
At4g02870	chr4:001272527	0.0	C/1272527-1272746,1272241-1272438,1271654-1272168	AT4G02870.1  CDS  gene_syn T5J8.19, T5J8_19  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78640.1); Has 22 Blast hits to 20 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G02870.1p  transcript_id AT4G02870.1  protein_id AT4G02870.1p  transcript_id AT4G02870.1  
At4g02871	chr4:001272781	0.0	C/1272781-1272933	AT4G02871.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G02871.1p  transcript_id AT4G02871.1  protein_id AT4G02871.1p  transcript_id AT4G02871.1  
At4g02880	chr4:001275131	0.0	W/1275131-1275178,1275476-1275638,1275754-1276403,1276537-1276710,1276798-1276914,1277074-1277253,1277342-1277388,1277634-1277913	AT4G02880.1  CDS  gene_syn T5J8.20, T5J8_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03290.1); Has 3704 Blast hits to 3126 proteins in 384 species: Archae - 40; Bacteria - 363; Metazoa - 1661; Fungi - 338; Plants - 170; Viruses - 7; Other Eukaryotes - 1125 (source: NCBI BLink).  protein_id AT4G02880.1p  transcript_id AT4G02880.1  protein_id AT4G02880.1p  transcript_id AT4G02880.1  
At4g02890	chr4:001278747	0.0	C/1278747-1279664	AT4G02890.3  CDS  gene_syn T5J8.21, T5J8_21, UBQ14  gene UBQ14  function Polyubiquitin gene containing 4 ubiquitin repeats.  go_component vacuole|GO:0005773|15539469|IDA  go_process protein modification process|GO:0006464||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|7713442|ISS  go_function protein binding|GO:0005515|8382544|ISS  go_function protein binding|GO:0005515||ISS  product UBQ14; protein binding  note UBQ14; FUNCTIONS IN: protein binding; INVOLVED IN: protein modification process, ubiquitin-dependent protein catabolic process; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: UBQ10 (POLYUBIQUITIN 10); protein binding (TAIR:AT4G05320.6); Has 20434 Blast hits to 5450 proteins in 614 species: Archae - 0; Bacteria - 32; Metazoa - 10181; Fungi - 1986; Plants - 3456; Viruses - 603; Other Eukaryotes - 4176 (source: NCBI BLink).  protein_id AT4G02890.3p  transcript_id AT4G02890.3  protein_id AT4G02890.3p  transcript_id AT4G02890.3  
At4g02890	chr4:001278747	0.0	C/1278747-1279664	AT4G02890.4  CDS  gene_syn T5J8.21, T5J8_21, UBQ14  gene UBQ14  function Polyubiquitin gene containing 4 ubiquitin repeats.  go_process protein modification process|GO:0006464||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|7713442|ISS  go_function protein binding|GO:0005515|8382544|ISS  go_function protein binding|GO:0005515||ISS  product UBQ14; protein binding  note UBQ14; FUNCTIONS IN: protein binding; INVOLVED IN: protein modification process, ubiquitin-dependent protein catabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: UBQ10 (POLYUBIQUITIN 10); protein binding (TAIR:AT4G05320.6); Has 20434 Blast hits to 5450 proteins in 614 species: Archae - 0; Bacteria - 32; Metazoa - 10181; Fungi - 1986; Plants - 3456; Viruses - 603; Other Eukaryotes - 4176 (source: NCBI BLink).  protein_id AT4G02890.4p  transcript_id AT4G02890.4  protein_id AT4G02890.4p  transcript_id AT4G02890.4  
At4g02890	chr4:001279540	0.0	C/1279540-1279664,1278747-1279311	AT4G02890.2  CDS  gene_syn T5J8.21, T5J8_21, UBQ14  gene UBQ14  function Polyubiquitin gene containing 4 ubiquitin repeats.  go_component vacuole|GO:0005773|15539469|IDA  go_process protein modification process|GO:0006464||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|7713442|ISS  go_function protein binding|GO:0005515|8382544|ISS  go_function protein binding|GO:0005515||ISS  product UBQ14; protein binding  note UBQ14; FUNCTIONS IN: protein binding; INVOLVED IN: protein modification process, ubiquitin-dependent protein catabolic process; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: UBQ10 (POLYUBIQUITIN 10); protein binding (TAIR:AT4G05320.6); Has 16299 Blast hits to 5445 proteins in 612 species: Archae - 0; Bacteria - 21; Metazoa - 8083; Fungi - 1628; Plants - 2812; Viruses - 452; Other Eukaryotes - 3303 (source: NCBI BLink).  protein_id AT4G02890.2p  transcript_id AT4G02890.2  protein_id AT4G02890.2p  transcript_id AT4G02890.2  
At4g02890	chr4:001279617	0.0	C/1279617-1279664,1278747-1279388	AT4G02890.1  CDS  gene_syn T5J8.21, T5J8_21, UBQ14  gene UBQ14  function Polyubiquitin gene containing 4 ubiquitin repeats.  go_component vacuole|GO:0005773|15539469|IDA  go_process protein modification process|GO:0006464||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|7713442|ISS  go_function protein binding|GO:0005515|8382544|ISS  go_function protein binding|GO:0005515||ISS  product UBQ14; protein binding  note UBQ14; FUNCTIONS IN: protein binding; INVOLVED IN: protein modification process, ubiquitin-dependent protein catabolic process; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: UBQ10 (POLYUBIQUITIN 10); protein binding (TAIR:AT4G05320.6); Has 16299 Blast hits to 5445 proteins in 612 species: Archae - 0; Bacteria - 21; Metazoa - 8083; Fungi - 1628; Plants - 2812; Viruses - 452; Other Eukaryotes - 3303 (source: NCBI BLink).  protein_id AT4G02890.1p  transcript_id AT4G02890.1  protein_id AT4G02890.1p  transcript_id AT4G02890.1  
At4g02900	chr4:001284066	0.0	W/1284066-1284379,1284459-1284608,1284798-1284933,1285213-1285314,1285445-1285564,1285698-1285778,1285860-1286200,1286293-1286538,1286618-1286942,1287035-1287268,1287355-1287602,1287687-1287747	AT4G02900.1  CDS  gene_syn T5J8.22, T5J8_22  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process biological_process|GO:0008150||ND  product early-responsive to dehydration protein-related / ERD protein-related  note early-responsive to dehydration protein-related / ERD protein-related; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: early-responsive to dehydration protein-related / ERD protein-related (TAIR:AT3G21620.1); Has 946 Blast hits to 833 proteins in 133 species: Archae - 0; Bacteria - 2; Metazoa - 165; Fungi - 457; Plants - 257; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT4G02900.1p  transcript_id AT4G02900.1  protein_id AT4G02900.1p  transcript_id AT4G02900.1  
At4g02910	chr4:001289581	0.0	C/1289581-1289615,1289331-1289454,1288762-1288832,1288486-1288636	AT4G02910.1  CDS  gene_syn T4I9.21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G02910.1p  transcript_id AT4G02910.1  protein_id AT4G02910.1p  transcript_id AT4G02910.1  
At4g02920	chr4:001292816	0.0	W/1292816-1292905,1293227-1293398,1293497-1293917,1294001-1294066,1294160-1294670	AT4G02920.2  CDS  gene_syn T4I9.20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03340.1); Has 21 Blast hits to 21 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G02920.2p  transcript_id AT4G02920.2  protein_id AT4G02920.2p  transcript_id AT4G02920.2  
At4g02920	chr4:001292816	0.0	W/1292816-1292905,1293230-1293398,1293497-1293917,1294001-1294066,1294160-1294670	AT4G02920.1  CDS  gene_syn T4I9.20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03340.1); Has 21 Blast hits to 21 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G02920.1p  transcript_id AT4G02920.1  protein_id AT4G02920.1p  transcript_id AT4G02920.1  
At4g02930	chr4:001298164	0.0	C/1298164-1298354,1297974-1298049,1297788-1297880,1297632-1297706,1297195-1297299,1297016-1297106,1296721-1296926,1296552-1296635,1296378-1296446,1296234-1296296,1295908-1296148,1295751-1295821	AT4G02930.1  CDS  gene_syn T4I9.19  go_component cell wall|GO:0005618|16287169|IDA  go_component mitochondrion|GO:0005739|17137349|IDA  go_process translational elongation|GO:0006414||IEA  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function translation elongation factor activity|GO:0003746||ISS  product elongation factor Tu, putative / EF-Tu, putative  note elongation factor Tu, putative / EF-Tu, putative; FUNCTIONS IN: translation elongation factor activity, ATP binding; INVOLVED IN: translational elongation; LOCATED IN: mitochondrion, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, bacterial and organelle (InterPro:IPR004541), Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B); GTP binding / GTPase/ translation elongation factor (TAIR:AT4G20360.1); Has 60152 Blast hits to 60103 proteins in 12753 species: Archae - 783; Bacteria - 22701; Metazoa - 13343; Fungi - 6902; Plants - 1303; Viruses - 3; Other Eukaryotes - 15117 (source: NCBI BLink).  protein_id AT4G02930.1p  transcript_id AT4G02930.1  protein_id AT4G02930.1p  transcript_id AT4G02930.1  
At4g02940	chr4:001306658	0.0	W/1306658-1307216,1309139-1309284,1309364-1309481,1309557-1309679,1309770-1309885,1309964-1310118,1310207-1310699	AT4G02940.1  CDS  gene_syn T4I9.18, T4I9_18  go_function oxidoreductase activity|GO:0016491||IEA  go_process biological_process|GO:0008150||ND  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT2G48080.1); Has 143 Blast hits to 141 proteins in 42 species: Archae - 0; Bacteria - 8; Metazoa - 22; Fungi - 12; Plants - 70; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT4G02940.1p  transcript_id AT4G02940.1  protein_id AT4G02940.1p  transcript_id AT4G02940.1  
At4g02950	chr4:001311198	0.0	W/1311198-1312154	AT4G02950.1  CDS  gene_syn T4I9.17, T4I9_17  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product ubiquitin family protein  note ubiquitin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: ubiquitin family protein (TAIR:AT4G03360.1); Has 223 Blast hits to 219 proteins in 58 species: Archae - 0; Bacteria - 2; Metazoa - 49; Fungi - 15; Plants - 103; Viruses - 17; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT4G02950.1p  transcript_id AT4G02950.1  protein_id AT4G02950.1p  transcript_id AT4G02950.1  
At4g02960	chr4:001312547	0.0	C/1312547-1316983	AT4G02960.1  mRNA_TE_gene  pseudo  gene_syn ARABIDOPSIS THALIANA RETRO ELEMENT 2, ATRE2, T4I9.16, T4I9_16  gene ATRE2  function a copia-type retrotransposon element containing LTRs and encoding a polyprotein. This retro element exists in two loci in Landsberg erecta but only once in Columbia  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)  
At4g02970	chr4:001317499	0.0	W/1317499-1318200,1319069-1319179	AT4G02970.1  CDS  gene_syn AT7SL-1, Arabidopsis 7SL RNA 1, T4I9.15, T4I9_15  gene AT7SL-1  function Signal recognition particle. Type 4 of RNA polymerase III dependent genes.  go_process protein modification process|GO:0006464||IEA  go_component signal recognition particle, endoplasmic reticulum targeting|GO:0005786||ISS  go_function molecular_function|GO:0003674||ND  product AT7SL-1 (Arabidopsis 7SL RNA 1)  note Arabidopsis 7SL RNA 1 (AT7SL-1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: signal recognition particle, endoplasmic reticulum targeting; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: ubiquitin family protein (TAIR:AT4G03350.1); Has 6255 Blast hits to 2981 proteins in 541 species: Archae - 0; Bacteria - 2; Metazoa - 2682; Fungi - 712; Plants - 1485; Viruses - 154; Other Eukaryotes - 1220 (source: NCBI BLink).  protein_id AT4G02970.1p  transcript_id AT4G02970.1  protein_id AT4G02970.1p  transcript_id AT4G02970.1  
At4g02980	chr4:001321332	0.0	C/1321332-1321449,1320843-1320949,1320553-1320753,1320092-1320156,1319902-1320007	AT4G02980.1  CDS  gene_syn ABP, ABP1, AT-ERABP1, ENDOPLASMIC RETICULUM AUXIN BINDING PROTEIN 1, T4I9.14, T4I9_14  gene ABP1  function auxin binding protein involved in cell elongation and cell division  go_component endoplasmic reticulum lumen|GO:0005788||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cytokinesis|GO:0000910|11297513|IMP  go_process unidimensional cell growth|GO:0009826|11297513|IMP  go_process unidimensional cell growth|GO:0009826||IMP  go_process positive regulation of DNA endoreduplication|GO:0032877|18952781|IMP  go_process positive regulation of cell size|GO:0045793|18952781|IMP  go_process positive regulation of cell division|GO:0051781|18952781|IMP  go_function auxin binding|GO:0010011|9804548|IMP  product ABP1 (ENDOPLASMIC RETICULUM AUXIN BINDING PROTEIN 1); auxin binding  note ENDOPLASMIC RETICULUM AUXIN BINDING PROTEIN 1 (ABP1); FUNCTIONS IN: auxin binding; INVOLVED IN: positive regulation of cell division, positive regulation of cell size, positive regulation of DNA endoreduplication, unidimensional cell growth, cytokinesis; LOCATED IN: endomembrane system, endoplasmic reticulum lumen; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin-binding protein (InterPro:IPR000526), Cupin, RmlC-type (InterPro:IPR011051), RmlC-like jelly roll fold (InterPro:IPR014710); Has 158 Blast hits to 158 proteins in 50 species: Archae - 10; Bacteria - 36; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT4G02980.1p  transcript_id AT4G02980.1  protein_id AT4G02980.1p  transcript_id AT4G02980.1  
At4g02990	chr4:001322158	0.0	W/1322158-1323783	AT4G02990.1  CDS  gene_syn T4I9.13, T4I9_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial transcription termination factor family protein / mTERF family protein  note mitochondrial transcription termination factor family protein / mTERF family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: mitochondrial transcription termination factor-related / mTERF-related (TAIR:AT2G44020.1); Has 720 Blast hits to 479 proteins in 57 species: Archae - 0; Bacteria - 2; Metazoa - 89; Fungi - 3; Plants - 593; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT4G02990.1p  transcript_id AT4G02990.1  protein_id AT4G02990.1p  transcript_id AT4G02990.1  
At4g03000	chr4:001324602	0.0	W/1324602-1326512,1326815-1327348	AT4G03000.1  CDS  gene_syn T4I9.12, T4I9_12  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G03370.1); Has 39923 Blast hits to 24215 proteins in 1366 species: Archae - 304; Bacteria - 4238; Metazoa - 19569; Fungi - 2590; Plants - 1247; Viruses - 219; Other Eukaryotes - 11756 (source: NCBI BLink).  protein_id AT4G03000.1p  transcript_id AT4G03000.1  protein_id AT4G03000.1p  transcript_id AT4G03000.1  
At4g03000	chr4:001324602	0.0	W/1324602-1326512,1326815-1327348	AT4G03000.2  CDS  gene_syn T4I9.12, T4I9_12  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G03370.1); Has 39923 Blast hits to 24215 proteins in 1366 species: Archae - 304; Bacteria - 4238; Metazoa - 19569; Fungi - 2590; Plants - 1247; Viruses - 219; Other Eukaryotes - 11756 (source: NCBI BLink).  protein_id AT4G03000.2p  transcript_id AT4G03000.2  protein_id AT4G03000.2p  transcript_id AT4G03000.2  
At4g03010	chr4:001329952	0.0	W/1329952-1331139	AT4G03010.1  CDS  gene_syn T4I9.11, T4I9_11  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT1G03440.1); Has 34784 Blast hits to 13367 proteins in 682 species: Archae - 21; Bacteria - 2064; Metazoa - 6911; Fungi - 273; Plants - 23289; Viruses - 0; Other Eukaryotes - 2226 (source: NCBI BLink).  protein_id AT4G03010.1p  transcript_id AT4G03010.1  protein_id AT4G03010.1p  transcript_id AT4G03010.1  
At4g03020	chr4:001334035	0.0	C/1334035-1334472,1333757-1333876,1333467-1333544,1332955-1333131,1332757-1332834,1332482-1332660,1332211-1332369,1332042-1332102,1331704-1331895	AT4G03020.1  CDS  gene_syn T4I9.10, T4I9_10  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD repeat protein 23 (InterPro:IPR017399); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT2G43770.1); Has 27310 Blast hits to 15280 proteins in 497 species: Archae - 34; Bacteria - 3736; Metazoa - 12063; Fungi - 5373; Plants - 2263; Viruses - 0; Other Eukaryotes - 3841 (source: NCBI BLink).  protein_id AT4G03020.1p  transcript_id AT4G03020.1  protein_id AT4G03020.1p  transcript_id AT4G03020.1  
At4g03030	chr4:001335942	0.0	C/1335942-1337270	AT4G03030.1  CDS  gene_syn T4I9.9, T4I9_9  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT3G63220.2); Has 1405 Blast hits to 1314 proteins in 98 species: Archae - 0; Bacteria - 31; Metazoa - 962; Fungi - 4; Plants - 358; Viruses - 9; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT4G03030.1p  transcript_id AT4G03030.1  protein_id AT4G03030.1p  transcript_id AT4G03030.1  
At4g03038	chr4:001340115	0.0	C/1340115-1341289	AT4G03038.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G03038.1  
At4g03039	chr4:001340479	0.0	W/1340479-1340656	AT4G03039.1  miRNA  gene_syn MICRORNA826A, MIR826A  gene MIR826A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UAGUCCGGUUUUGGAUACGUG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR826A (MICRORNA826A); miRNA  transcript_id AT4G03039.1  
At4g03040	chr4:001341083	0.0	W/1341083-1341126,1342176-1342240,1342971-1343140	AT4G03040.1  CDS  gene_syn T4I9.8, T4I9_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G03040.1p  transcript_id AT4G03040.1  protein_id AT4G03040.1p  transcript_id AT4G03040.1  
At4g03050	chr4:001344332	0.0	W/1344332-1344543,1344787-1345226,1345399-1345568,1345864-1346127	AT4G03050.2  CDS  gene_syn AOP3, T4I9.7, T4I9_7  gene AOP3  function Transcriptional silent in leaf tissues of ecotype Col. The transcribed allele in ecotype Ler encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of hydroxyalkyl glucosinolates among different ecotypes of Arabidopsis.  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process glucosinolate biosynthetic process|GO:0019761|11251105|IMP  product AOP3; iron ion binding / oxidoreductase  note AOP3; FUNCTIONS IN: oxidoreductase activity, iron ion binding; INVOLVED IN: glucosinolate biosynthetic process; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: AOP1; oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (TAIR:AT4G03070.1); Has 4301 Blast hits to 4166 proteins in 587 species: Archae - 0; Bacteria - 501; Metazoa - 66; Fungi - 247; Plants - 2737; Viruses - 55; Other Eukaryotes - 695 (source: NCBI BLink).  protein_id AT4G03050.2p  transcript_id AT4G03050.2  protein_id AT4G03050.2p  transcript_id AT4G03050.2  
At4g03050	chr4:001344791	0.0	W/1344791-1345226,1345399-1345568,1345864-1346127	AT4G03050.1  CDS  gene_syn AOP3, T4I9.7, T4I9_7  gene AOP3  function Transcriptional silent in leaf tissues of ecotype Col. The transcribed allele in ecotype Ler encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of hydroxyalkyl glucosinolates among different ecotypes of Arabidopsis.  go_component endomembrane system|GO:0012505||IEA  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process glucosinolate biosynthetic process|GO:0019761|11251105|IMP  product AOP3; iron ion binding / oxidoreductase  note AOP3; FUNCTIONS IN: oxidoreductase activity, iron ion binding; INVOLVED IN: glucosinolate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: AOP1; oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (TAIR:AT4G03070.1); Has 4257 Blast hits to 4165 proteins in 587 species: Archae - 0; Bacteria - 501; Metazoa - 66; Fungi - 248; Plants - 2692; Viruses - 55; Other Eukaryotes - 695 (source: NCBI BLink).  protein_id AT4G03050.1p  transcript_id AT4G03050.1  protein_id AT4G03050.1p  transcript_id AT4G03050.1  
At4g03060	chr4:001351980	0.0	C/1351980-1353854	AT4G03060.1  pseudogenic_transcript  pseudo  gene_syn AOP2, T4I9.6, T4I9_6, alkenyl hydroxalkyl producing 2  gene AOP2  function Encodes a truncated and null function protein, due to a 5-bp deletion in cDNA. The functional allele in ecotype Cvi, AOP2, encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of alkenyl glucosinolate among different ecotypes of Arabidopsis.  note similar to AOP3 (2-oxoglutarate?dependent dioxygenase 3), oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors [Arabidopsis thaliana] (TAIR:AT4G03050.1); similar to AOP3 (2-oxoglutarate?dependent dioxygenase 3), oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors [Arabidopsis thaliana] (TAIR:AT4G03050.2); similar to 2-oxoglutarate-dependent dioxygenase [Arabidopsis lyrata] (GB:AAL14664.1); contains InterPro domain 2OG-Fe(II) oxygenase (InterPro:IPR005123); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283)  
At4g03063	chr4:001355667	0.0	W/1355667-1356018	AT4G03063.1  pseudogenic_transcript  pseudo  function Pseudogene of AT4G03070; AOP1 (2-oxoglutarate-dependent dioxygenase 1.1);  
At4g03070	chr4:001358442	0.0	W/1358442-1358821,1358960-1359299,1359372-1359620	AT4G03070.1  CDS  gene_syn AOP, AOP1, AOP1.1, T4I9.5, T4I9_5  gene AOP1  function Encodes a possible 2-oxoglutarate-dependent dioxygenase that is involved in glucosinolate biosynthesis. The gene is expressed in all ecotypes examined but the enzymatic activity has not been determined experimentally. In Col, there is one copy of this gene (aka AOP1.1) but Ler contains two copies, AOP1.1 and a tightly linked AOP1.2.  go_component membrane|GO:0016020|17432890|IDA  go_process glucosinolate biosynthetic process|GO:0019761|11251105|ISS  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706|11251105|ISS  product AOP1; oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors  note AOP1; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; INVOLVED IN: glucosinolate biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase, putative (TAIR:AT1G52820.1); Has 5016 Blast hits to 4965 proteins in 620 species: Archae - 0; Bacteria - 588; Metazoa - 66; Fungi - 436; Plants - 2857; Viruses - 0; Other Eukaryotes - 1069 (source: NCBI BLink).  protein_id AT4G03070.1p  transcript_id AT4G03070.1  protein_id AT4G03070.1p  transcript_id AT4G03070.1  
At4g03080	chr4:001364965	0.0	C/1364965-1365166,1364814-1364874,1364618-1364696,1364416-1364495,1364231-1364325,1364041-1364140,1363888-1363957,1363588-1363689,1363283-1363364,1363024-1363194,1362633-1362804,1362337-1362538,1362006-1362176,1361688-1361926,1361521-1361605,1361330-1361428,1361047-1361246,1360888-1360963,1360662-1360797,1360415-1360554,1359935-1360018	AT4G03080.1  CDS  gene_syn BRI1 SUPPRESSOR 1 (BSU1)-LIKE 1, BSL1, T4I9.4, T4I9_4  gene BSL1  go_component plasma membrane|GO:0005886|17317660|IDA  go_function phosphoprotein phosphatase activity|GO:0004721||IEA  go_function iron ion binding|GO:0005506||IEA  go_function hydrolase activity|GO:0016787||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product kelch repeat-containing serine/threonine phosphoesterase family protein  note BRI1 SUPPRESSOR 1 (BSU1)-LIKE 1 (BSL1); FUNCTIONS IN: hydrolase activity, manganese ion binding, protein serine/threonine phosphatase activity, iron ion binding, phosphoprotein phosphatase activity; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Metallophosphoesterase (InterPro:IPR004843), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Serine/threonine protein phosphatase, BSU1 (InterPro:IPR012391), Kelch-type beta propeller (InterPro:IPR015915), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: kelch repeat-containing serine/threonine phosphoesterase family protein (TAIR:AT2G27210.1); Has 8464 Blast hits to 6996 proteins in 403 species: Archae - 49; Bacteria - 206; Metazoa - 3422; Fungi - 1329; Plants - 1405; Viruses - 5; Other Eukaryotes - 2048 (source: NCBI BLink).  protein_id AT4G03080.1p  transcript_id AT4G03080.1  protein_id AT4G03080.1p  transcript_id AT4G03080.1  
At4g03090	chr4:001370794	0.0	C/1370794-1370937,1370558-1370713,1370370-1370453,1370159-1370287,1369796-1370014,1369545-1369676,1369376-1369468,1368874-1369026,1368419-1368707,1368178-1368315,1368020-1368089,1367751-1367892,1367186-1367656,1367068-1367105,1366495-1366978	AT4G03090.1  CDS  gene_syn T4I9.3, T4I9_3  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700||IEA  go_function sequence-specific DNA binding|GO:0043565||IEA  product sequence-specific DNA binding / transcription factor  note sequence-specific DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356); Has 109 Blast hits to 103 proteins in 37 species: Archae - 0; Bacteria - 2; Metazoa - 30; Fungi - 4; Plants - 26; Viruses - 3; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT4G03090.1p  transcript_id AT4G03090.1  protein_id AT4G03090.1p  transcript_id AT4G03090.1  
At4g03100	chr4:001374361	0.0	W/1374361-1374716,1374813-1374933,1375014-1375364,1375449-1375913	AT4G03100.1  CDS  gene_syn F4C21.2  go_component intracellular|GO:0005622||IEA  go_process signal transduction|GO:0007165||IEA  go_function Rac GTPase activator activity|GO:0030675||ISS  product rac GTPase activating protein, putative  note rac GTPase activating protein, putative; FUNCTIONS IN: Rac GTPase activator activity; INVOLVED IN: signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095), Rho GTPase activation protein (InterPro:IPR008936), RhoGAP (InterPro:IPR000198); BEST Arabidopsis thaliana protein match is: rac GTPase activating protein, putative (TAIR:AT2G46710.1); Has 3126 Blast hits to 3120 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 2422; Fungi - 299; Plants - 105; Viruses - 0; Other Eukaryotes - 300 (source: NCBI BLink).  protein_id AT4G03100.1p  transcript_id AT4G03100.1  protein_id AT4G03100.1p  transcript_id AT4G03100.1  
At4g03110	chr4:001379098	0.0	C/1379098-1379275,1378846-1378928,1378159-1378210,1377946-1378071,1377775-1377854,1377508-1377687,1377077-1377407,1376710-1376999	AT4G03110.2  CDS  gene_syn F4C21.3  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA-binding protein, putative  note RNA-binding protein, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Ribonucleoprotein, BRUNO-like (InterPro:IPR015903), Paraneoplastic encephalomyelitis antigen (InterPro:IPR002343), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein, putative (TAIR:AT1G03457.1); Has 12937 Blast hits to 9767 proteins in 361 species: Archae - 8; Bacteria - 169; Metazoa - 8882; Fungi - 1148; Plants - 1367; Viruses - 0; Other Eukaryotes - 1363 (source: NCBI BLink).  protein_id AT4G03110.2p  transcript_id AT4G03110.2  protein_id AT4G03110.2p  transcript_id AT4G03110.2  
At4g03110	chr4:001379098	0.0	C/1379098-1379275,1378846-1378928,1378159-1378210,1377946-1378071,1377775-1377854,1377508-1377687,1377077-1377410,1376856-1376999,1376612-1376760	AT4G03110.1  CDS  gene_syn F4C21.3  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA-binding protein, putative  note RNA-binding protein, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Ribonucleoprotein, BRUNO-like (InterPro:IPR015903), Paraneoplastic encephalomyelitis antigen (InterPro:IPR002343), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein, putative (TAIR:AT1G03457.1); Has 23803 Blast hits to 13446 proteins in 570 species: Archae - 12; Bacteria - 898; Metazoa - 15003; Fungi - 2374; Plants - 3057; Viruses - 0; Other Eukaryotes - 2459 (source: NCBI BLink).  protein_id AT4G03110.1p  transcript_id AT4G03110.1  protein_id AT4G03110.1p  transcript_id AT4G03110.1  
At4g03113	chr4:001382553	0.0	C/1382553-1382741	AT4G03113.1  CDS  go_component mitochondrion|GO:0005739||IEA  product unknown protein  note unknown protein; LOCATED IN: mitochondrion; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G03113.1p  transcript_id AT4G03113.1  protein_id AT4G03113.1p  transcript_id AT4G03113.1  
At4g03115	chr4:001385446	0.0	C/1385446-1385485,1385124-1385249,1384695-1384756,1384367-1384603,1384117-1384278,1383915-1383964,1383687-1383819,1383561-1383598,1383366-1383462	AT4G03115.1  CDS  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_function binding|GO:0005488||ISS  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: transport; LOCATED IN: mitochondrial inner membrane, membrane; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: PUMP1 (PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1); binding / oxidative phosphorylation uncoupler (TAIR:AT3G54110.1); Has 17586 Blast hits to 9842 proteins in 348 species: Archae - 0; Bacteria - 0; Metazoa - 8407; Fungi - 4933; Plants - 2617; Viruses - 0; Other Eukaryotes - 1629 (source: NCBI BLink).  protein_id AT4G03115.1p  transcript_id AT4G03115.1  protein_id AT4G03115.1p  transcript_id AT4G03115.1  
At4g03120	chr4:001385747	0.0	W/1385747-1385754,1385857-1385899,1386315-1386356,1386438-1386666,1387030-1387331	AT4G03120.1  CDS  gene_syn F4C21.4, F4C21_4  go_component nucleus|GO:0005634||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  product proline-rich family protein  note proline-rich family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, U1-C type (InterPro:IPR013085), Zinc finger, U1-type (InterPro:IPR003604), Zinc finger, C2H2-type matrin (InterPro:IPR000690); Has 34224 Blast hits to 17252 proteins in 759 species: Archae - 8; Bacteria - 3549; Metazoa - 17424; Fungi - 3540; Plants - 5278; Viruses - 776; Other Eukaryotes - 3649 (source: NCBI BLink).  protein_id AT4G03120.1p  transcript_id AT4G03120.1  protein_id AT4G03120.1p  transcript_id AT4G03120.1  
At4g03130	chr4:001390589	0.0	C/1390589-1390646,1390154-1390480,1388716-1390067,1388357-1388623,1388182-1388262,1387981-1388092,1387781-1387884	AT4G03130.1  CDS  gene_syn F4C21.5, F4C21_5  go_component intracellular|GO:0005622||IEA  go_component intracellular|GO:0005622||ISS  go_process biological_process|GO:0008150||ND  go_function transcription coactivator activity|GO:0003713||ISS  product transcription coactivator  note transcription coactivator; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G21480.1); Has 232 Blast hits to 219 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 149; Fungi - 27; Plants - 50; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G03130.1p  transcript_id AT4G03130.1  protein_id AT4G03130.1p  transcript_id AT4G03130.1  
At4g03135	chr4:001390895	0.0	W/1390895-1390966	AT4G03135.1  tRNA  gene_syn 67050.TRNA-PRO-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: AGG)  transcript_id AT4G03135.1  
At4g03140	chr4:001392191	0.0	W/1392191-1392333,1392431-1392514,1392775-1393093,1393177-1393662	AT4G03140.1  CDS  gene_syn F4C21.6, F4C21_6  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product binding / catalytic/ oxidoreductase  note binding / catalytic/ oxidoreductase; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT3G26760.1); Has 77654 Blast hits to 77513 proteins in 2170 species: Archae - 459; Bacteria - 43130; Metazoa - 4383; Fungi - 3908; Plants - 1441; Viruses - 5; Other Eukaryotes - 24328 (source: NCBI BLink).  protein_id AT4G03140.1p  transcript_id AT4G03140.1  protein_id AT4G03140.1p  transcript_id AT4G03140.1  
At4g03150	chr4:001394239	0.0	C/1394239-1394529,1393731-1393997	AT4G03150.1  CDS  gene_syn F4C21.13  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 60 Blast hits to 60 proteins in 30 species: Archae - 0; Bacteria - 46; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G03150.1p  transcript_id AT4G03150.1  protein_id AT4G03150.1p  transcript_id AT4G03150.1  
At4g03153	chr4:001395504	0.0	C/1395504-1395588,1394845-1395407	AT4G03153.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kinase interacting family protein  note kinase interacting family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: KIP1-like (InterPro:IPR011684); BEST Arabidopsis thaliana protein match is: kinase interacting family protein (TAIR:AT1G03470.2); Has 214 Blast hits to 210 proteins in 45 species: Archae - 2; Bacteria - 4; Metazoa - 29; Fungi - 8; Plants - 120; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT4G03153.1p  transcript_id AT4G03153.1  protein_id AT4G03153.1p  transcript_id AT4G03153.1  
At4g03156	chr4:001396662	0.0	C/1396662-1396784,1396002-1396112	AT4G03156.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product small GTPase-related  note small GTPase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ras (InterPro:IPR013753); BEST Arabidopsis thaliana protein match is: ATRABA2D (HOARABIDOPSIS RAB GTPASE HOMOLOG A2D); GTP binding (TAIR:AT5G59150.1); Has 200 Blast hits to 200 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 198; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G03156.1p  transcript_id AT4G03156.1  protein_id AT4G03156.1p  transcript_id AT4G03156.1  
At4g03160	chr4:001397979	0.0	W/1397979-1398179,1398308-1398685	AT4G03160.1  CDS  gene_syn F4C21.8, F4C21_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, root, carpel; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT4G03170.1); Has 29 Blast hits to 29 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 4; Plants - 13; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G03160.1p  transcript_id AT4G03160.1  protein_id AT4G03160.1p  transcript_id AT4G03160.1  
At4g03165	chr4:001400233	0.0	C/1400233-1400291,1399774-1400098,1399378-1399446	AT4G03165.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G03165.1p  transcript_id AT4G03165.1  protein_id AT4G03165.1p  transcript_id AT4G03165.1  
At4g03170	chr4:001400832	0.0	W/1400832-1401584	AT4G03170.1  CDS  gene_syn F4C21.9, F4C21_9  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: DNA-binding protein-related (TAIR:AT1G20600.1); Has 128 Blast hits to 128 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 33; Fungi - 6; Plants - 37; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT4G03170.1p  transcript_id AT4G03170.1  protein_id AT4G03170.1p  transcript_id AT4G03170.1  
At4g03175	chr4:001402858	0.0	C/1402858-1402864,1402690-1402778,1402439-1402582,1402187-1402366	AT4G03175.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function protein kinase activity|GO:0004672||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G40120.1); Has 11746 Blast hits to 11740 proteins in 419 species: Archae - 0; Bacteria - 1; Metazoa - 5528; Fungi - 1955; Plants - 1614; Viruses - 9; Other Eukaryotes - 2639 (source: NCBI BLink).  protein_id AT4G03175.1p  transcript_id AT4G03175.1  protein_id AT4G03175.1p  transcript_id AT4G03175.1  
At4g03180	chr4:001403289	0.0	W/1403289-1403451,1404269-1404663	AT4G03180.1  CDS  gene_syn F4C21.10, F4C21_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 869 Blast hits to 650 proteins in 112 species: Archae - 2; Bacteria - 20; Metazoa - 199; Fungi - 90; Plants - 42; Viruses - 0; Other Eukaryotes - 516 (source: NCBI BLink).  protein_id AT4G03180.1p  transcript_id AT4G03180.1  protein_id AT4G03180.1p  transcript_id AT4G03180.1  
At4g03190	chr4:001406603	0.0	C/1406603-1407057,1406000-1406492,1405108-1405917	AT4G03190.1  CDS  gene_syn A. THALIANA GERMIN-LIKE PROTEIN 1, AFB1, ATFBL18, ATGER1, ATGRH1, AUXIN SIGNALING F BOX PROTEIN 1, F4C21.11, F4C21_11, GRH1, GRR1-LIKE PROTEIN 1  gene GRH1  function Encodes an F box protein belonging to the TIR1 subfamily. This protein forms SCF complexes with ASK1 and CUL1 and interacts with Aux/IAA proteins in an auxin-dependent manner. It also has sequence similarity to the yeast protein GRR1, which is involved in glucose repression.  go_component nucleus|GO:0005634|15992545|IDA  go_component nuclear SCF ubiquitin ligase complex|GO:0043224|15992545|IPI  go_process response to molecule of bacterial origin|GO:0002237|16627744|IEP  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|15992545|IGI  go_process response to auxin stimulus|GO:0009733|15992545|IMP  go_process pollen maturation|GO:0010152|18628351|IGI  go_process negative regulation of transcription by glucose|GO:0045014|12008900|TAS  go_process stamen development|GO:0048443|18628351|IGI  go_process developmental growth|GO:0048589|15992545|IGI  go_function ubiquitin-protein ligase activity|GO:0004842|12008900|ISS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|12008900|IPI  go_function auxin binding|GO:0010011|15917797|IGI  product GRH1 (GRR1-LIKE PROTEIN 1); auxin binding / protein binding / ubiquitin-protein ligase  note GRR1-LIKE PROTEIN 1 (GRH1); FUNCTIONS IN: auxin binding, ubiquitin-protein ligase activity, protein binding; INVOLVED IN: in 7 processes; LOCATED IN: nuclear SCF ubiquitin ligase complex, nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: TIR1 (TRANSPORT INHIBITOR RESPONSE 1); auxin binding / protein binding / ubiquitin-protein ligase (TAIR:AT3G62980.1); Has 1717 Blast hits to 1208 proteins in 95 species: Archae - 0; Bacteria - 2; Metazoa - 782; Fungi - 12; Plants - 849; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT4G03190.1p  transcript_id AT4G03190.1  protein_id AT4G03190.1p  transcript_id AT4G03190.1  
At4g03200	chr4:001408296	0.0	W/1408296-1408589,1408786-1408858,1408987-1409008,1409308-1409386,1409475-1409507,1409819-1409967,1410121-1410277,1410368-1410608,1410695-1410936,1411029-1411292,1411374-1411484,1411556-1411780,1411853-1412056,1412134-1412310,1412381-1412566	AT4G03200.1  CDS  gene_syn F4C21.12, F4C21_12  go_component chloroplast|GO:0009507|18431481|IDA  go_function catalytic activity|GO:0003824||IEA  product catalytic  note catalytic; FUNCTIONS IN: catalytic activity; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF255 (InterPro:IPR004879), Thioredoxin fold (InterPro:IPR012335), Six-hairpin glycosidase-like (InterPro:IPR008928), Thioredoxin-like fold (InterPro:IPR012336); Has 2027 Blast hits to 2020 proteins in 379 species: Archae - 84; Bacteria - 613; Metazoa - 108; Fungi - 47; Plants - 17; Viruses - 0; Other Eukaryotes - 1158 (source: NCBI BLink).  protein_id AT4G03200.1p  transcript_id AT4G03200.1  protein_id AT4G03200.1p  transcript_id AT4G03200.1  
At4g03200	chr4:001409318	0.0	W/1409318-1409386,1409475-1409507,1409819-1409967,1410121-1410277,1410368-1410608,1410695-1410936,1411029-1411292,1411374-1411484,1411556-1411780,1411853-1412056,1412134-1412310,1412381-1412566	AT4G03200.2  CDS  gene_syn F4C21.12, F4C21_12  go_component chloroplast|GO:0009507|18431481|IDA  go_function catalytic activity|GO:0003824||IEA  product catalytic  note catalytic; FUNCTIONS IN: catalytic activity; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase-like (InterPro:IPR008928), Thioredoxin-like fold (InterPro:IPR012336); Has 1883 Blast hits to 1876 proteins in 377 species: Archae - 82; Bacteria - 560; Metazoa - 107; Fungi - 49; Plants - 17; Viruses - 0; Other Eukaryotes - 1068 (source: NCBI BLink).  protein_id AT4G03200.2p  transcript_id AT4G03200.2  protein_id AT4G03200.2p  transcript_id AT4G03200.2  
At4g03205	chr4:001412814	0.0	W/1412814-1413338,1413427-1413502,1413582-1413676,1413760-1413765	AT4G03205.1  CDS  gene_syn hemf2  gene hemf2  go_component chloroplast|GO:0009507||IEA  go_process porphyrin biosynthetic process|GO:0006779||IEA  go_function coproporphyrinogen oxidase activity|GO:0004109||IEA  product coproporphyrinogen III oxidase, putative / coproporphyrinogenase, putative / coprogen oxidase, putative  note hemf2; FUNCTIONS IN: coproporphyrinogen oxidase activity; INVOLVED IN: porphyrin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Coproporphyrinogen III oxidase (InterPro:IPR001260); BEST Arabidopsis thaliana protein match is: LIN2 (LESION INITIATION 2); coproporphyrinogen oxidase (TAIR:AT1G03475.1); Has 3349 Blast hits to 3348 proteins in 807 species: Archae - 0; Bacteria - 1336; Metazoa - 90; Fungi - 103; Plants - 54; Viruses - 0; Other Eukaryotes - 1766 (source: NCBI BLink).  protein_id AT4G03205.1p  transcript_id AT4G03205.1  protein_id AT4G03205.1p  transcript_id AT4G03205.1  
At4g03205	chr4:001412814	0.0	W/1412814-1413338,1413427-1413502,1413582-1413703	AT4G03205.2  CDS  gene_syn hemf2  gene hemf2  go_component chloroplast|GO:0009507||IEA  go_process porphyrin biosynthetic process|GO:0006779||IEA  go_function coproporphyrinogen oxidase activity|GO:0004109||IEA  product coproporphyrinogen III oxidase, putative / coproporphyrinogenase, putative / coprogen oxidase, putative  note hemf2; FUNCTIONS IN: coproporphyrinogen oxidase activity; INVOLVED IN: porphyrin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Coproporphyrinogen III oxidase (InterPro:IPR001260); BEST Arabidopsis thaliana protein match is: LIN2 (LESION INITIATION 2); coproporphyrinogen oxidase (TAIR:AT1G03475.1); Has 3355 Blast hits to 3354 proteins in 808 species: Archae - 0; Bacteria - 1338; Metazoa - 90; Fungi - 103; Plants - 54; Viruses - 0; Other Eukaryotes - 1770 (source: NCBI BLink).  protein_id AT4G03205.2p  transcript_id AT4G03205.2  protein_id AT4G03205.2p  transcript_id AT4G03205.2  
At4g03210	chr4:001416019	0.0	W/1416019-1416190,1416314-1416414,1416514-1416707,1416792-1417197	AT4G03210.1  CDS  gene_syn F4C21.14, F4C21_14, XTH9, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9  gene XTH9  function encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers.  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process cellular glucan metabolic process|GO:0006073||IEA  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762|12856951|ISS  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product XTH9 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9); hydrolase, acting on glycosyl bonds / xyloglucan:xyloglucosyl transferase  note XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9 (XTH9); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, apoplast, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Beta-glucanase (InterPro:IPR008264), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4); hydrolase, acting on glycosyl bonds / hydrolase, hydrolyzing O-glycosyl compounds / xyloglucan:xyloglucosyl transferase (TAIR:AT5G13870.1); Has 1307 Blast hits to 1301 proteins in 198 species: Archae - 0; Bacteria - 162; Metazoa - 0; Fungi - 258; Plants - 800; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).  protein_id AT4G03210.1p  transcript_id AT4G03210.1  protein_id AT4G03210.1p  transcript_id AT4G03210.1  
At4g03210	chr4:001416107	0.0	W/1416107-1416194,1416314-1416414,1416514-1416707,1416792-1417197	AT4G03210.2  CDS  gene_syn F4C21.14, F4C21_14, XTH9, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9  gene XTH9  function encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers.  go_component cell wall|GO:0005618||IEA  go_component apoplast|GO:0048046||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process cellular glucan metabolic process|GO:0006073||IEA  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762|12856951|ISS  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product XTH9 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9); hydrolase, acting on glycosyl bonds / xyloglucan:xyloglucosyl transferase  note XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9 (XTH9); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Beta-glucanase (InterPro:IPR008264), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4); hydrolase, acting on glycosyl bonds / hydrolase, hydrolyzing O-glycosyl compounds / xyloglucan:xyloglucosyl transferase (TAIR:AT5G13870.1); Has 1295 Blast hits to 1289 proteins in 197 species: Archae - 0; Bacteria - 161; Metazoa - 0; Fungi - 254; Plants - 798; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT4G03210.2p  transcript_id AT4G03210.2  protein_id AT4G03210.2p  transcript_id AT4G03210.2  
At4g03220	chr4:001417472	0.0	W/1417472-1418485,1418580-1418765,1418852-1419148	AT4G03220.1  CDS  gene_syn F4C21.15, F4C21_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box family protein (FBL13) (TAIR:AT5G53840.1); Has 965 Blast hits to 954 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 962; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G03220.1p  transcript_id AT4G03220.1  protein_id AT4G03220.1p  transcript_id AT4G03220.1  
At4g03230	chr4:001421541	0.0	C/1421541-1422804,1420959-1421444,1420536-1420891,1420233-1420443,1419915-1420152,1419676-1419826,1419278-1419592	AT4G03230.1  CDS  gene_syn F4C21.16, F4C21_16  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding  note ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609), PAN-like, type 2 (InterPro:IPR013227), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), EGF-like, type 3 (InterPro:IPR000742), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: S-locus protein kinase, putative (TAIR:AT4G27300.1); Has 85050 Blast hits to 83931 proteins in 3188 species: Archae - 44; Bacteria - 7365; Metazoa - 36943; Fungi - 6381; Plants - 19553; Viruses - 360; Other Eukaryotes - 14404 (source: NCBI BLink).  protein_id AT4G03230.1p  transcript_id AT4G03230.1  protein_id AT4G03230.1p  transcript_id AT4G03230.1  
At4g03240	chr4:001424541	0.0	C/1424541-1424758,1424379-1424451,1424234-1424281,1424040-1424134,1423685-1423814	AT4G03240.1  CDS  gene_syn ATFH, F4C21.17, F4C21_17, FH, FRATAXIN HOMOLOG  gene FH  function Encodes AtFH, a frataxin homolog. Frataxin is required for the biogenesis of mitochondria in different organisms. AtFH knock-out mutants are lethal. Required for full activity of mitochondrial Fe-S proteins. Deficiency of AtFH induces oxidative stress.  go_component mitochondrion|GO:0005739|15474026|ISS  go_process response to oxidative stress|GO:0006979|17092311|IMP  go_process aerobic respiration|GO:0009060|15474026|IMP  go_process embryonic development|GO:0009790|17258206|IMP  go_process response to hydrogen peroxide|GO:0042542|15474026|IMP  go_function molecular_function|GO:0003674||ND  product FH (FRATAXIN HOMOLOG)  note FRATAXIN HOMOLOG (FH); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development, response to oxidative stress, response to hydrogen peroxide, aerobic respiration; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Frataxin (InterPro:IPR017789), Frataxin-like (InterPro:IPR002908); Has 708 Blast hits to 708 proteins in 343 species: Archae - 0; Bacteria - 442; Metazoa - 106; Fungi - 86; Plants - 25; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT4G03240.1p  transcript_id AT4G03240.1  protein_id AT4G03240.1p  transcript_id AT4G03240.1  
At4g03250	chr4:001425622	0.0	W/1425622-1425646,1425730-1426335,1426511-1426590,1426737-1427210,1427306-1427380,1427489-1427586,1427672-1427744	AT4G03250.1  CDS  gene_syn F4C21.18, F4C21_18  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product homeobox-leucine zipper family protein  note homeobox-leucine zipper family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: HB-1 (homeobox-1); transcription factor (TAIR:AT1G28420.1); Has 519 Blast hits to 516 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 421; Fungi - 11; Plants - 72; Viruses - 3; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT4G03250.1p  transcript_id AT4G03250.1  protein_id AT4G03250.1p  transcript_id AT4G03250.1  
At4g03260	chr4:001429092	0.0	W/1429092-1429142,1429260-1430502,1430591-1430737,1430839-1431431	AT4G03260.1  CDS  gene_syn F4C21.19, F4C21_19  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: protein binding (TAIR:AT1G78230.1); Has 10652 Blast hits to 7869 proteins in 473 species: Archae - 12; Bacteria - 2927; Metazoa - 5462; Fungi - 520; Plants - 576; Viruses - 25; Other Eukaryotes - 1130 (source: NCBI BLink).  protein_id AT4G03260.1p  transcript_id AT4G03260.1  protein_id AT4G03260.1p  transcript_id AT4G03260.1  
At4g03260	chr4:001429092	0.0	W/1429092-1429142,1429260-1430502,1430591-1430737,1430839-1431431	AT4G03260.2  CDS  gene_syn F4C21.19, F4C21_19  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: protein binding (TAIR:AT1G78230.1); Has 10652 Blast hits to 7869 proteins in 473 species: Archae - 12; Bacteria - 2927; Metazoa - 5462; Fungi - 520; Plants - 576; Viruses - 25; Other Eukaryotes - 1130 (source: NCBI BLink).  protein_id AT4G03260.2p  transcript_id AT4G03260.2  protein_id AT4G03260.2p  transcript_id AT4G03260.2  
At4g03270	chr4:001433491	0.0	C/1433491-1433691,1433309-1433392,1433140-1433235,1432851-1433058,1432650-1432780,1432375-1432563	AT4G03270.1  CDS  gene_syn CYCD6;1, Cyclin D6;1, F4C21.20, F4C21_20  gene CYCD6;1  go_component nucleus|GO:0005634||IEA  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase activity|GO:0004693||ISS  product CYCD6;1 (Cyclin D6;1); cyclin-dependent protein kinase  note Cyclin D6;1 (CYCD6;1); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: F mature embryo stage, 4 leaf senescence stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCD4;1 (CYCLIN D4;1); cyclin-dependent protein kinase regulator (TAIR:AT5G65420.1); Has 1530 Blast hits to 1529 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 865; Fungi - 23; Plants - 542; Viruses - 2; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT4G03270.1p  transcript_id AT4G03270.1  protein_id AT4G03270.1p  transcript_id AT4G03270.1  
At4g03280	chr4:001440314	0.0	W/1440314-1440346,1440438-1440688,1441131-1441248,1441348-1441530,1441613-1441717	AT4G03280.1  CDS  gene_syn F4C21.21, F4C21_21, PETC, PGR1, PHOTOSYNTHETIC ELECTRON TRANSFER C, PROTON GRADIENT REGULATION 1, RIESKE IRON-SULFUR PROTEIN PRECURSOR  gene PETC  function Encodes the Rieske FeS center of cytochrome b6f complex. Gene is expressed in shoot but not in root. Mutant has reduced electron transport at saturating light intensities and Q-cycle activity is hypersensitive to acidification of the thylakoid lumen.  go_component plasma membrane|GO:0005886|15060130|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_component cytochrome b6f complex|GO:0009512|12040099|TAS  go_component chloroplast thylakoid membrane|GO:0009535|12040099|TAS  go_process photosynthetic electron transport in cytochrome b6/f|GO:0009775|12040099|TAS  go_process nonphotochemical quenching|GO:0010196||IMP  go_function electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity|GO:0046028|12040099|TAS  product PETC (PHOTOSYNTHETIC ELECTRON TRANSFER C); electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II  note PHOTOSYNTHETIC ELECTRON TRANSFER C (PETC); FUNCTIONS IN: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity; INVOLVED IN: defense response to bacterium, nonphotochemical quenching, photosynthetic electron transport in cytochrome b6/f; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Rieske [2Fe-2S] iron-sulphur domain (InterPro:IPR017941), Rieske [2Fe-2S] region (InterPro:IPR005806), Cytochrome b6-f complex Fe-S subunit (InterPro:IPR014909), Rieske iron-sulphur protein (InterPro:IPR014349); BEST Arabidopsis thaliana protein match is: ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative (TAIR:AT5G13430.1); Has 4008 Blast hits to 4000 proteins in 846 species: Archae - 18; Bacteria - 1708; Metazoa - 197; Fungi - 118; Plants - 336; Viruses - 0; Other Eukaryotes - 1631 (source: NCBI BLink).  protein_id AT4G03280.1p  transcript_id AT4G03280.1  protein_id AT4G03280.1p  transcript_id AT4G03280.1  
At4g03280	chr4:001440462	0.0	W/1440462-1440688,1441131-1441248,1441348-1441530,1441613-1441717	AT4G03280.2  CDS  gene_syn F4C21.21, F4C21_21, PETC, PGR1, PHOTOSYNTHETIC ELECTRON TRANSFER C, PROTON GRADIENT REGULATION 1, RIESKE IRON-SULFUR PROTEIN PRECURSOR  gene PETC  function Encodes the Rieske FeS center of cytochrome b6f complex. Gene is expressed in shoot but not in root. Mutant has reduced electron transport at saturating light intensities and Q-cycle activity is hypersensitive to acidification of the thylakoid lumen.  go_component plasma membrane|GO:0005886|15060130|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_component cytochrome b6f complex|GO:0009512|12040099|TAS  go_component chloroplast thylakoid membrane|GO:0009535|12040099|TAS  go_process photosynthetic electron transport in cytochrome b6/f|GO:0009775|12040099|TAS  go_process nonphotochemical quenching|GO:0010196||IMP  go_function electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity|GO:0046028|12040099|TAS  product PETC (PHOTOSYNTHETIC ELECTRON TRANSFER C); electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II  note PHOTOSYNTHETIC ELECTRON TRANSFER C (PETC); FUNCTIONS IN: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity; INVOLVED IN: defense response to bacterium, nonphotochemical quenching, photosynthetic electron transport in cytochrome b6/f; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Rieske [2Fe-2S] iron-sulphur domain (InterPro:IPR017941), Rieske [2Fe-2S] region (InterPro:IPR005806), Cytochrome b6-f complex Fe-S subunit (InterPro:IPR014909), Rieske iron-sulphur protein (InterPro:IPR014349); BEST Arabidopsis thaliana protein match is: ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative (TAIR:AT5G13430.1); Has 4008 Blast hits to 4000 proteins in 846 species: Archae - 18; Bacteria - 1708; Metazoa - 197; Fungi - 118; Plants - 336; Viruses - 0; Other Eukaryotes - 1631 (source: NCBI BLink).  protein_id AT4G03280.2p  transcript_id AT4G03280.2  protein_id AT4G03280.2p  transcript_id AT4G03280.2  
At4g03285	chr4:001442005	0.0	W/1442005-1442076	AT4G03285.1  tRNA  gene_syn 67050.TRNA-THR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Thr (anticodon: TGT)  transcript_id AT4G03285.1  
At4g03290	chr4:001442813	0.0	W/1442813-1443277	AT4G03290.1  CDS  gene_syn F4C21.22, F4C21_22  go_component nucleus|GO:0005634|14617066|IDA  go_function calcium ion binding|GO:0005509||IEA  go_process response to cold|GO:0009409|14617066|IEP  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding protein, putative  note calcium-binding protein, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to cold; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding protein, putative (TAIR:AT1G05990.1); Has 19122 Blast hits to 13539 proteins in 1298 species: Archae - 0; Bacteria - 128; Metazoa - 8984; Fungi - 3440; Plants - 3328; Viruses - 0; Other Eukaryotes - 3242 (source: NCBI BLink).  protein_id AT4G03290.1p  transcript_id AT4G03290.1  protein_id AT4G03290.1p  transcript_id AT4G03290.1  
At4g03292	chr4:001444672	0.0	C/1444672-1445220	AT4G03292.1  CDS  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: reverse transcriptase-related (TAIR:AT2G02650.1); Has 71 Blast hits to 71 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G03292.1p  transcript_id AT4G03292.1  protein_id AT4G03292.1p  transcript_id AT4G03292.1  
At4g03295	chr4:001445879	0.0	C/1445879-1445954	AT4G03295.1  snoRNA  gene_syn 67050.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT4G03295.1  
At4g03298	chr4:001446689	0.0	W/1446689-1446735,1446977-1447113,1447203-1447684	AT4G03298.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 0; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G03298.1p  transcript_id AT4G03298.1  protein_id AT4G03298.1p  transcript_id AT4G03298.1  
At4g03300	chr4:001447373	0.0	W/1447373-1456751	AT4G03300.1  mRNA_TE_gene  pseudo  gene_syn F4C21.23, F4C21_23  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G27780.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G36860.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G42730.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At4g03305	chr4:001457798	0.0	C/1457798-1458592	AT4G03305.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G40110.1)  
At4g03310	chr4:001460159	0.0	W/1460159-1464144	AT4G03310.1  mRNA_TE_gene  pseudo  gene_syn F4C21.24, F4C21_24  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 2.4e-90 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At4g03320	chr4:001464529	0.0	W/1464529-1464587,1464930-1465063,1465159-1465820	AT4G03320.1  CDS  gene_syn F4C21.25, F4C21_25, TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20-IV, tic20-IV  gene tic20-IV  product tic20-IV (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20-IV)  note TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20-IV (tic20-IV); EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Chloroplast protein import component Tic20 (InterPro:IPR005691); BEST Arabidopsis thaliana protein match is: TIC20 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20) (TAIR:AT1G04940.1); Has 44 Blast hits to 44 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G03320.1p  transcript_id AT4G03320.1  protein_id AT4G03320.1p  transcript_id AT4G03320.1  
At4g03330	chr4:001466525	0.0	W/1466525-1467012,1467176-1467605	AT4G03330.1  CDS  gene_syn ATSYP123, F4C21.26, F4C21_26, SYNTAXIN OF PLANTS 123, SYP123  gene SYP123  function member of SYP12 Gene Family  go_component membrane|GO:0016020||IEA  go_process intracellular protein transport|GO:0006886|11115874|TAS  go_process membrane fusion|GO:0006944|11115874|TAS  go_function SNAP receptor activity|GO:0005484|11115874|TAS  product SYP123 (SYNTAXIN OF PLANTS 123); SNAP receptor  note SYNTAXIN OF PLANTS 123 (SYP123); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion, intracellular protein transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: SYP124 (SYNTAXIN OF PLANTS 124); SNAP receptor (TAIR:AT1G61290.1); Has 1901 Blast hits to 1900 proteins in 215 species: Archae - 5; Bacteria - 30; Metazoa - 989; Fungi - 307; Plants - 275; Viruses - 0; Other Eukaryotes - 295 (source: NCBI BLink).  protein_id AT4G03330.1p  transcript_id AT4G03330.1  protein_id AT4G03330.1p  transcript_id AT4G03330.1  
At4g03340	chr4:001468820	0.0	C/1468820-1469465,1468662-1468737,1468469-1468584,1467865-1468373	AT4G03340.1  CDS  gene_syn F4C21.27, F4C21_27  go_component mitochondrion|GO:0005739||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function acetylglucosaminyltransferase activity|GO:0008375||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein  note glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: mitochondrion, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 14 (InterPro:IPR003406); BEST Arabidopsis thaliana protein match is: glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein (TAIR:AT1G03520.1); Has 690 Blast hits to 687 proteins in 86 species: Archae - 0; Bacteria - 14; Metazoa - 462; Fungi - 0; Plants - 190; Viruses - 14; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT4G03340.1p  transcript_id AT4G03340.1  protein_id AT4G03340.1p  transcript_id AT4G03340.1  
At4g03350	chr4:001473718	0.0	C/1473718-1474509	AT4G03350.1  CDS  gene_syn F4C21.29, F4C21_29  go_process protein modification process|GO:0006464||IEA  go_function molecular_function|GO:0003674||ND  product ubiquitin family protein  note ubiquitin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: AT7SL-1 (Arabidopsis 7SL RNA 1) (TAIR:AT4G02970.1); Has 6047 Blast hits to 2864 proteins in 531 species: Archae - 0; Bacteria - 0; Metazoa - 2649; Fungi - 719; Plants - 1442; Viruses - 150; Other Eukaryotes - 1087 (source: NCBI BLink).  protein_id AT4G03350.1p  transcript_id AT4G03350.1  protein_id AT4G03350.1p  transcript_id AT4G03350.1  
At4g03360	chr4:001474998	0.0	C/1474998-1475852	AT4G03360.1  CDS  gene_syn F4C21.30, F4C21_30  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product ubiquitin family protein  note ubiquitin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: ubiquitin family protein (TAIR:AT4G02950.1); Has 211 Blast hits to 205 proteins in 58 species: Archae - 0; Bacteria - 2; Metazoa - 35; Fungi - 18; Plants - 105; Viruses - 17; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT4G03360.1p  transcript_id AT4G03360.1  protein_id AT4G03360.1p  transcript_id AT4G03360.1  
At4g03364	chr4:001476899	0.0	C/1476899-1477524	AT4G03364.1  pseudogenic_transcript  pseudo  function Pseudogene of AT4G05230; ubiquitin family protein  
At4g03370	chr4:001478078	0.0	C/1478078-1478965	AT4G03370.1  CDS  gene_syn F4C21.32, F4C21_32  go_process protein modification process|GO:0006464||IEA  go_function molecular_function|GO:0003674||ND  product ubiquitin family protein  note ubiquitin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: ubiquitin family protein (TAIR:AT4G03360.1); Has 5686 Blast hits to 2635 proteins in 510 species: Archae - 0; Bacteria - 6; Metazoa - 2500; Fungi - 699; Plants - 1408; Viruses - 87; Other Eukaryotes - 986 (source: NCBI BLink).  protein_id AT4G03370.1p  transcript_id AT4G03370.1  protein_id AT4G03370.1p  transcript_id AT4G03370.1  
At4g03376	chr4:001482628	0.0	C/1482628-1482853	AT4G03376.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G56420  
At4g03380	chr4:001490181	0.0	C/1490181-1490228,1489930-1490107,1489148-1489294,1487213-1487302,1487101-1487136,1485668-1485729,1485049-1485090	AT4G03380.1  CDS  gene_syn F4C21.34, F4C21_34  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: NAF1 (NUCLEAR ASSEMBLY FACTOR 1) (TAIR:AT1G03530.1); Has 13 Blast hits to 13 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G03380.1p  transcript_id AT4G03380.1  protein_id AT4G03380.1p  transcript_id AT4G03380.1  
At4g03390	chr4:001494448	0.0	C/1494448-1494553,1494178-1494307,1494021-1494092,1493867-1493932,1493706-1493777,1493552-1493623,1493401-1493472,1493260-1493325,1493107-1493172,1492587-1493017,1492136-1492506,1491791-1492062,1491570-1491708,1491337-1491473,1491100-1491256,1490912-1491013	AT4G03390.1  CDS  gene_syn F4C21.35, F4C21_35, SRF3, STRUBBELIG-RECEPTOR FAMILY 3  gene SRF3  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product SRF3 (STRUBBELIG-RECEPTOR FAMILY 3); ATP binding / kinase/ protein serine/threonine kinase  note STRUBBELIG-RECEPTOR FAMILY 3 (SRF3); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: SRF1 (strubbelig receptor family 1); kinase (TAIR:AT2G20850.1); Has 104562 Blast hits to 78934 proteins in 2893 species: Archae - 52; Bacteria - 7276; Metazoa - 35203; Fungi - 5374; Plants - 43078; Viruses - 296; Other Eukaryotes - 13283 (source: NCBI BLink).  protein_id AT4G03390.1p  transcript_id AT4G03390.1  protein_id AT4G03390.1p  transcript_id AT4G03390.1  
At4g03400	chr4:001499422	0.0	C/1499422-1499729,1499228-1499329,1498318-1499144,1497675-1498213	AT4G03400.1  CDS  gene_syn DFL2, DWARF IN LIGHT 2, F9H3.1, GH3-10  gene DFL2  function Encodes a GH3-related gene involved in red light-specific hypocotyl elongation. Analysis of sense and antisense transgenic plants suggests that DFL2 is located downstream of red light signal transduction and determines the degree of hypocotyl elongation.  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to light stimulus|GO:0009416|14581632|IEP  go_process response to auxin stimulus|GO:0009733|14581632|IEP  go_process response to auxin stimulus|GO:0009733||ISS  product DFL2 (DWARF IN LIGHT 2)  note DWARF IN LIGHT 2 (DFL2); INVOLVED IN: response to auxin stimulus, response to light stimulus; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: JAR1 (JASMONATE RESISTANT 1); ATP binding / adenylyltransferase/ catalytic/ jasmonate-amino synthetase (TAIR:AT2G46370.2); Has 721 Blast hits to 682 proteins in 114 species: Archae - 0; Bacteria - 230; Metazoa - 49; Fungi - 2; Plants - 218; Viruses - 0; Other Eukaryotes - 222 (source: NCBI BLink).  protein_id AT4G03400.1p  transcript_id AT4G03400.1  protein_id AT4G03400.1p  transcript_id AT4G03400.1  
At4g03405	chr4:001501607	0.0	W/1501607-1501678	AT4G03405.1  tRNA  gene_syn 67050.TRNA-GLN-1, 67051.TRNA-GLN-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gln (anticodon: CTG)  transcript_id AT4G03405.1  
At4g03410	chr4:001501907	0.0	W/1501907-1502242,1502362-1502502,1502579-1502692,1502771-1502944,1503047-1503162,1503299-1503365,1503481-1503486	AT4G03410.1  CDS  gene_syn F9H3.2  go_component chloroplast|GO:0009507||IEA  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product peroxisomal membrane protein-related  note peroxisomal membrane protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mpv17/PMP22 (InterPro:IPR007248); BEST Arabidopsis thaliana protein match is: peroxisomal membrane protein-related (TAIR:AT1G52870.2); Has 962 Blast hits to 962 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 504; Fungi - 220; Plants - 169; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT4G03410.1p  transcript_id AT4G03410.1  protein_id AT4G03410.1p  transcript_id AT4G03410.1  
At4g03410	chr4:001501907	0.0	W/1501907-1502242,1502362-1502502,1502579-1502692,1502771-1502944,1503047-1503162,1503299-1503503	AT4G03410.2  CDS  gene_syn F9H3.2  go_component chloroplast|GO:0009507||IEA  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product peroxisomal membrane protein-related  note peroxisomal membrane protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mpv17/PMP22 (InterPro:IPR007248); BEST Arabidopsis thaliana protein match is: peroxisomal membrane protein-related (TAIR:AT1G52870.2); Has 960 Blast hits to 960 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 502; Fungi - 220; Plants - 169; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT4G03410.2p  transcript_id AT4G03410.2  protein_id AT4G03410.2p  transcript_id AT4G03410.2  
At4g03415	chr4:001505247	0.0	C/1505247-1505510,1504820-1505167,1504628-1504745,1504319-1504542,1503789-1504241	AT4G03415.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product catalytic/ protein serine/threonine phosphatase  note catalytic/ protein serine/threonine phosphatase; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: catalytic/ protein serine/threonine phosphatase (TAIR:AT1G03590.1); Has 3075 Blast hits to 3074 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 970; Fungi - 303; Plants - 1111; Viruses - 3; Other Eukaryotes - 688 (source: NCBI BLink).  protein_id AT4G03415.1p  transcript_id AT4G03415.1  protein_id AT4G03415.1p  transcript_id AT4G03415.1  
At4g03420	chr4:001512226	0.0	W/1512226-1512306,1512385-1512605,1512717-1512921,1513082-1513259,1513347-1513594	AT4G03420.1  CDS  gene_syn F9H3.4, F9H3_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03610.1); Has 151 Blast hits to 150 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G03420.1p  transcript_id AT4G03420.1  protein_id AT4G03420.1p  transcript_id AT4G03420.1  
At4g03430	chr4:001517411	0.0	C/1517411-1520500	AT4G03430.1  CDS  gene_syn EMB2770, EMBRYO DEFECTIVE 2770, F9H3.5, F9H3_5, STA1, STABILIZED 1  gene EMB2770  function Encodes a nuclear protein similar to the human U5 small ribonucleoprotein-associated 102-kD protein and to the yeast pre-mRNA splicing factors Prp1p and Prp6p. STA1 expression is upregulated by cold stress, and the sta1-1 mutant is defective in the splicing of the cold-induced COR15A gene. Luciferase imaging was used to isolate a recessive mutant, sta1-1, with enhanced stability of the normally unstable luciferase transcript. This mutation also causes the stabilization of some endogenous gene transcripts and has a range of developmental and stress response phenotypes.  go_component nucleus|GO:0005634|16751345|IDA  go_process response to cold|GO:0009409|16751345|IMP  go_process response to abiotic stimulus|GO:0009628|16751345|IMP  go_function RNA splicing factor activity, transesterification mechanism|GO:0031202|16751345|ISS  product EMB2770 (EMBRYO DEFECTIVE 2770); RNA splicing factor, transesterification mechanism  note EMBRYO DEFECTIVE 2770 (EMB2770); FUNCTIONS IN: RNA splicing factor activity, transesterification mechanism; INVOLVED IN: response to cold, response to abiotic stimulus; LOCATED IN: nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide-like helical (InterPro:IPR011990), PRP1 splicing factor, N-terminal (InterPro:IPR010491), Ubiquitin (InterPro:IPR000626), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 35 protein (TAIR:AT4G38590.2); Has 2761 Blast hits to 1528 proteins in 264 species: Archae - 67; Bacteria - 221; Metazoa - 1027; Fungi - 640; Plants - 350; Viruses - 0; Other Eukaryotes - 456 (source: NCBI BLink).  protein_id AT4G03430.1p  transcript_id AT4G03430.1  protein_id AT4G03430.1p  transcript_id AT4G03430.1  
At4g03435	chr4:001520784	0.0	C/1520784-1520856	AT4G03435.1  tRNA  gene_syn 67051.TRNA-PHE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Phe (anticodon: GAA)  transcript_id AT4G03435.1  
At4g03437	chr4:001522577	0.0	C/1522577-1523276	AT4G03437.1  pseudogenic_transcript  pseudo  function Pseudogene of AT4G03480; ankyrin repeat family protein  
At4g03438	chr4:001523306	0.0	C/1523306-1523503	AT4G03438.1  miRNA  gene_syn MICRORNA447C, MIR447C  gene MIR447C  function Encodes a microRNA that targets several 2-phosphoglycerate kinase-related family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGGGGACGACAUCUUUUGUUG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR447C (MICRORNA447C); miRNA  transcript_id AT4G03438.1  
At4g03440	chr4:001527121	0.0	C/1527121-1527133,1526293-1526969,1525647-1525935,1525028-1525575,1524199-1524927	AT4G03440.1  CDS  gene_syn F9H3.6, F9H3_6  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: protein binding (TAIR:AT4G03480.1); Has 14732 Blast hits to 7208 proteins in 304 species: Archae - 8; Bacteria - 873; Metazoa - 8875; Fungi - 814; Plants - 1181; Viruses - 41; Other Eukaryotes - 2940 (source: NCBI BLink).  protein_id AT4G03440.1p  transcript_id AT4G03440.1  protein_id AT4G03440.1p  transcript_id AT4G03440.1  
At4g03443	chr4:001527716	0.0	W/1527716-1528057	AT4G03443.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT4G03443.1p  transcript_id AT4G03443.1  protein_id AT4G03443.1p  transcript_id AT4G03443.1  
At4g03445	chr4:001528134	0.0	C/1528134-1528370	AT4G03445.1  miRNA  gene_syn MICRORNA447A, MIR447A  gene MIR447A  function Encodes a microRNA that targets several 2-phosphoglycerate kinase-related family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGGGGACGAGAUGUUUUGUUG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR447A (MICRORNA447A); miRNA  transcript_id AT4G03445.1  
At4g03450	chr4:001531028	0.0	C/1531028-1531736,1530371-1530915,1529612-1530283	AT4G03450.1  CDS  gene_syn F9H3.7, F9H3_7  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT4G03440.1); Has 18286 Blast hits to 9142 proteins in 348 species: Archae - 18; Bacteria - 1007; Metazoa - 10770; Fungi - 1193; Plants - 1291; Viruses - 43; Other Eukaryotes - 3964 (source: NCBI BLink).  protein_id AT4G03450.1p  transcript_id AT4G03450.1  protein_id AT4G03450.1p  transcript_id AT4G03450.1  
At4g03455	chr4:001535426	0.0	C/1535426-1535661	AT4G03455.1  miRNA  gene_syn MICRORNA447B, MIR447B  gene MIR447B  function Encodes a microRNA that targets several 2-phosphoglycerate kinase-related family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGGGGACGAGAUGUUUUGUUG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR447B (MICRORNA447B); miRNA  transcript_id AT4G03455.1  
At4g03460	chr4:001540078	0.0	C/1540078-1540111,1539680-1539782,1538673-1539424,1538050-1538588,1537543-1537965,1536404-1536586	AT4G03460.1  CDS  gene_syn F9H3.9, F9H3_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT4G03500.1); Has 26211 Blast hits to 12224 proteins in 496 species: Archae - 26; Bacteria - 1592; Metazoa - 15275; Fungi - 1619; Plants - 1480; Viruses - 141; Other Eukaryotes - 6078 (source: NCBI BLink).  protein_id AT4G03460.1p  transcript_id AT4G03460.1  protein_id AT4G03460.1p  transcript_id AT4G03460.1  
At4g03470	chr4:001543434	0.0	C/1543434-1544283,1542807-1543333,1542059-1542733	AT4G03470.1  CDS  gene_syn F9H3.10, F9H3_10  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT4G05040.3); Has 14701 Blast hits to 7195 proteins in 309 species: Archae - 13; Bacteria - 808; Metazoa - 8987; Fungi - 861; Plants - 986; Viruses - 49; Other Eukaryotes - 2997 (source: NCBI BLink).  protein_id AT4G03470.1p  transcript_id AT4G03470.1  protein_id AT4G03470.1p  transcript_id AT4G03470.1  
At4g03480	chr4:001548728	0.0	C/1548728-1548871,1548558-1548626,1548431-1548466,1547683-1548195,1547066-1547399,1546444-1546991,1546024-1546347	AT4G03480.1  CDS  gene_syn F9H3.11, F9H3_11  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT4G03440.1); Has 16441 Blast hits to 7991 proteins in 359 species: Archae - 13; Bacteria - 1045; Metazoa - 10072; Fungi - 1048; Plants - 1199; Viruses - 46; Other Eukaryotes - 3018 (source: NCBI BLink).  protein_id AT4G03480.1p  transcript_id AT4G03480.1  protein_id AT4G03480.1p  transcript_id AT4G03480.1  
At4g03490	chr4:001552154	0.0	C/1552154-1552784,1551628-1552055,1550873-1551416,1550266-1550361,1549759-1549808,1549522-1549661,1549345-1549444	AT4G03490.1  CDS  gene_syn F9H3.12, F9H3_12  go_function protein binding|GO:0005515||ISS  product protein binding  note protein binding; FUNCTIONS IN: protein binding; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT4G03500.1); Has 19395 Blast hits to 9360 proteins in 384 species: Archae - 23; Bacteria - 1025; Metazoa - 12359; Fungi - 1194; Plants - 1122; Viruses - 91; Other Eukaryotes - 3581 (source: NCBI BLink).  protein_id AT4G03490.1p  transcript_id AT4G03490.1  protein_id AT4G03490.1p  transcript_id AT4G03490.1  
At4g03500	chr4:001553453	0.0	W/1553453-1553487,1554386-1555131,1555222-1555760,1555933-1556571	AT4G03500.1  CDS  gene_syn F9H3.13, F9H3_13  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT4G03460.1); Has 32039 Blast hits to 13956 proteins in 462 species: Archae - 29; Bacteria - 1596; Metazoa - 17824; Fungi - 2103; Plants - 1670; Viruses - 213; Other Eukaryotes - 8604 (source: NCBI BLink).  protein_id AT4G03500.1p  transcript_id AT4G03500.1  protein_id AT4G03500.1p  transcript_id AT4G03500.1  
At4g03505	chr4:001556888	0.0	C/1556888-1557319	AT4G03505.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT4G03470.1); Has 30 Blast hits to 30 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G03505.1p  transcript_id AT4G03505.1  protein_id AT4G03505.1p  transcript_id AT4G03505.1  
At4g03510	chr4:001557905	0.0	C/1557905-1558654	AT4G03510.1  CDS  gene_syn F9H3.14, F9H3_14, RMA1  gene RMA1  function RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway.  go_component endoplasmic reticulum|GO:0005783|19234086|IDA  go_component membrane|GO:0016020|9664717|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11329381|IDA  go_process protein exit from endoplasmic reticulum|GO:0032527|19234086|IMP  go_process secretion by cell|GO:0032940|9664717|IGI  go_function ubiquitin-protein ligase activity|GO:0004842|11329381|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product RMA1; protein binding / ubiquitin-protein ligase/ zinc ion binding  note RMA1; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: secretion by cell, protein exit from endoplasmic reticulum, ubiquitin-dependent protein catabolic process; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G28270.1); Has 3047 Blast hits to 3041 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 1894; Fungi - 362; Plants - 465; Viruses - 15; Other Eukaryotes - 311 (source: NCBI BLink).  protein_id AT4G03510.1p  transcript_id AT4G03510.1  protein_id AT4G03510.1p  transcript_id AT4G03510.1  
At4g03510	chr4:001557905	0.0	C/1557905-1558654	AT4G03510.2  CDS  gene_syn F9H3.14, F9H3_14, RMA1  gene RMA1  function RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway.  go_component endoplasmic reticulum|GO:0005783|19234086|IDA  go_component membrane|GO:0016020|9664717|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11329381|IDA  go_process protein exit from endoplasmic reticulum|GO:0032527|19234086|IMP  go_process secretion by cell|GO:0032940|9664717|IGI  go_function ubiquitin-protein ligase activity|GO:0004842|11329381|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product RMA1; protein binding / ubiquitin-protein ligase/ zinc ion binding  note RMA1; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: secretion by cell, protein exit from endoplasmic reticulum, ubiquitin-dependent protein catabolic process; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G28270.1); Has 3047 Blast hits to 3041 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 1894; Fungi - 362; Plants - 465; Viruses - 15; Other Eukaryotes - 311 (source: NCBI BLink).  protein_id AT4G03510.2p  transcript_id AT4G03510.2  protein_id AT4G03510.2p  transcript_id AT4G03510.2  
At4g03520	chr4:001562585	0.0	C/1562585-1562803	AT4G03520.2  CDS  gene_syn ATHM2, F9H3.15, F9H3_15, T5L23.1  gene ATHM2  function chloroplast localized thioredoxin, similar to prokaryotic types.  go_process response to oxidative stress|GO:0006979|11169189|IGI  go_process positive regulation of catalytic activity|GO:0043085|11169189|IDA  go_function enzyme activator activity|GO:0008047|11169189|IDA  product ATHM2; enzyme activator  note ATHM2; FUNCTIONS IN: enzyme activator activity; INVOLVED IN: response to oxidative stress, positive regulation of catalytic activity; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like fold (InterPro:IPR012336), Thioredoxin domain (InterPro:IPR013766); BEST Arabidopsis thaliana protein match is: ATHM1; enzyme activator (TAIR:AT1G03680.1).  protein_id AT4G03520.2p  transcript_id AT4G03520.2  protein_id AT4G03520.2p  transcript_id AT4G03520.2  
At4g03520	chr4:001563812	0.0	C/1563812-1564055,1562585-1562901	AT4G03520.1  CDS  gene_syn ATHM2, F9H3.15, F9H3_15, T5L23.1  gene ATHM2  function chloroplast localized thioredoxin, similar to prokaryotic types.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_process response to oxidative stress|GO:0006979|11169189|IGI  go_process positive regulation of catalytic activity|GO:0043085|11169189|IDA  go_function enzyme activator activity|GO:0008047|11169189|IDA  product ATHM2; enzyme activator  note ATHM2; FUNCTIONS IN: enzyme activator activity; INVOLVED IN: response to oxidative stress, positive regulation of catalytic activity; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin (InterPro:IPR005746), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATHM1; enzyme activator (TAIR:AT1G03680.1); Has 14035 Blast hits to 13163 proteins in 1731 species: Archae - 171; Bacteria - 5881; Metazoa - 2344; Fungi - 761; Plants - 1179; Viruses - 3; Other Eukaryotes - 3696 (source: NCBI BLink).  protein_id AT4G03520.1p  transcript_id AT4G03520.1  protein_id AT4G03520.1p  transcript_id AT4G03520.1  
At4g03530	chr4:001566068	0.0	W/1566068-1567192	AT4G03530.1  mRNA_TE_gene  pseudo  gene_syn T5L23.2  note Transposable element gene, copia-like retrotransposon family, has a 2.4e-66 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At4g03540	chr4:001570042	0.0	W/1570042-1570199,1570305-1570407,1571250-1571483	AT4G03540.1  CDS  gene_syn T5L23.3  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane family protein  note integral membrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03700.1); Has 272 Blast hits to 272 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 272; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G03540.1p  transcript_id AT4G03540.1  protein_id AT4G03540.1p  transcript_id AT4G03540.1  
At4g03550	chr4:001573513	0.0	W/1573513-1575383,1575544-1577566,1577747-1579195	AT4G03550.1  CDS  gene_syn ATGSL05, ATGSL5, GLUCAN SYNTHASE-LIKE 5, GSL05, GSL5, PMR4, POWDERY MILDEW RESISTANT 4, T5L23.4  gene ATGSL05  function Encodes a callose synthase that is required for wound and papillary callose formation in response to fungal pathogens Erysiphe and Blumeria. Mutants are resistant to P. parasitica and exhibit an exaggerated PR1 response.Contributes to PAMP-induced basal defense.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component 1,3-beta-glucan synthase complex|GO:0000148||ISS  go_component plasma membrane|GO:0005886|16618929|IDA  go_process 1,3-beta-glucan biosynthetic process|GO:0006075||ISS  go_process response to fungus|GO:0009620|10677553|IMP  go_process salicylic acid mediated signaling pathway|GO:0009863|10677553|IEP  go_process defense response signaling pathway, resistance gene-dependent|GO:0009870|10677553|IMP  go_process leaf morphogenesis|GO:0009965|10677553|IMP  go_process defense response to bacterium|GO:0042742|19095898|IMP  go_process defense response to fungus|GO:0050832|18790995|IMP  go_process callose deposition during defense response|GO:0052542|18790995|IMP  go_process callose deposition in cell wall during defense response|GO:0052544|19095898|IMP  go_function 1,3-beta-glucan synthase activity|GO:0003843||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product ATGSL05 (GLUCAN SYNTHASE-LIKE 5); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups  note GLUCAN SYNTHASE-LIKE 5 (ATGSL05); FUNCTIONS IN: transferase activity, transferring glycosyl groups, 1,3-beta-glucan synthase activity; INVOLVED IN: in 9 processes; LOCATED IN: 1,3-beta-glucan synthase complex, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 48 (InterPro:IPR003440); BEST Arabidopsis thaliana protein match is: GSL1 (GLUCAN SYNTHASE-LIKE 1); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups (TAIR:AT4G04970.1); Has 807 Blast hits to 582 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 534; Plants - 241; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT4G03550.1p  transcript_id AT4G03550.1  protein_id AT4G03550.1p  transcript_id AT4G03550.1  
At4g03560	chr4:001580253	0.0	W/1580253-1580372,1580701-1580844,1580941-1581048,1581359-1581454,1581570-1581700,1581893-1581953,1582051-1582217,1582310-1582415,1582522-1582599,1582753-1582814,1582961-1583033,1583152-1583217,1583310-1583453,1583530-1583587,1583857-1583964,1584052-1584115,1584191-1584359,1584598-1584662,1584818-1584908,1585083-1585169,1585282-1585353,1585474-1585511,1585598-1585691	AT4G03560.1  CDS  gene_syn ATCCH1, ATTPC1, CALCIUM CHANNEL 1, FATTY ACID OXYGENATION UPREGULATED 2, FOU2, T5L23.5, TPC1, TWO-PORE CHANNEL 1  gene ATTPC1  function Encodes a depolarization-activated Ca(2+) channel. Anti-sense experiments with this gene as well as Sucrose-H(+) symporters and complementation of yeast sucrose uptake mutant cch1 suggest that this protein mediates a voltage-activated Ca(2+ )influx. Mutants lack detectable SV channel activity suggesting TPC1 is essential component of the SV channel. Patch clamp analysis of loss of function mutation indicates TPC1 does not affect Ca2+ signaling in response to abiotic and biotic stress.  go_component vacuole|GO:0005773|14760709|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plant-type vacuole|GO:0000325|15772667|IDA  go_component vacuolar membrane|GO:0005774|18028262|IDA  go_component plasma membrane|GO:0005886|11577183|TAS  go_process calcium ion transport|GO:0006816|11577183|IC  go_process calcium ion transport|GO:0006816|11577183|IMP  go_process jasmonic acid biosynthetic process|GO:0009695|17253984|IMP  go_process seed germination|GO:0009845|15772667|IMP  go_process regulation of stomatal movement|GO:0010119|15772667|IMP  go_function voltage-gated calcium channel activity|GO:0005245|11577183|IGI  go_function voltage-gated calcium channel activity|GO:0005245|11577183|ISS  go_function calcium channel activity|GO:0005262|11577183|IGI  go_function calcium channel activity|GO:0005262|11577183|IMP  go_function calcium channel activity|GO:0005262||ISS  product ATTPC1 (TWO-PORE CHANNEL 1); calcium channel/ voltage-gated calcium channel  note TWO-PORE CHANNEL 1 (ATTPC1); FUNCTIONS IN: voltage-gated calcium channel activity, calcium channel activity; INVOLVED IN: calcium ion transport, jasmonic acid biosynthetic process, regulation of stomatal movement, seed germination; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ion transport (InterPro:IPR005821), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); Has 6636 Blast hits to 2993 proteins in 279 species: Archae - 0; Bacteria - 214; Metazoa - 5379; Fungi - 69; Plants - 132; Viruses - 0; Other Eukaryotes - 842 (source: NCBI BLink).  protein_id AT4G03560.1p  transcript_id AT4G03560.1  protein_id AT4G03560.1p  transcript_id AT4G03560.1  
At4g03565	chr4:001586747	0.0	W/1586747-1587172,1587274-1587435,1587531-1587734	AT4G03565.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03710.2); Has 34055 Blast hits to 8688 proteins in 440 species: Archae - 117; Bacteria - 17713; Metazoa - 6779; Fungi - 2177; Plants - 720; Viruses - 393; Other Eukaryotes - 6156 (source: NCBI BLink).  protein_id AT4G03565.1p  transcript_id AT4G03565.1  protein_id AT4G03565.1p  transcript_id AT4G03565.1  
At4g03566	chr4:001588566	0.0	C/1588566-1589018	AT4G03566.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19270.1); Has 46 Blast hits to 46 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G03566.1p  transcript_id AT4G03566.1  protein_id AT4G03566.1p  transcript_id AT4G03566.1  
At4g03570	chr4:001594040	0.0	C/1594040-1594105,1593763-1593849,1593487-1593666,1593073-1593204,1592738-1592890,1591772-1591908,1591576-1591630,1590955-1591065,1590413-1590535	AT4G03570.1  CDS  gene_syn T5L23.6, T5L23_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G03590.1); Has 38 Blast hits to 36 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G03570.1p  transcript_id AT4G03570.1  protein_id AT4G03570.1p  transcript_id AT4G03570.1  
At4g03580	chr4:001596985	0.0	W/1596985-1597035,1597397-1597441,1597713-1597865,1598034-1598112,1598212-1598408,1598930-1599091	AT4G03580.1  CDS  gene_syn T5L23.7, T5L23_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: cathepsin-related (TAIR:AT5G17080.1); Has 215 Blast hits to 146 proteins in 28 species: Archae - 0; Bacteria - 11; Metazoa - 101; Fungi - 14; Plants - 5; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT4G03580.1p  transcript_id AT4G03580.1  protein_id AT4G03580.1p  transcript_id AT4G03580.1  
At4g03590	chr4:001602761	0.0	C/1602761-1602950,1601634-1601849,1601298-1601437,1600780-1600974	AT4G03590.1  CDS  gene_syn T5L23.8, T5L23_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G03570.1); Has 69 Blast hits to 67 proteins in 21 species: Archae - 0; Bacteria - 1; Metazoa - 12; Fungi - 14; Plants - 26; Viruses - 1; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT4G03590.1p  transcript_id AT4G03590.1  protein_id AT4G03590.1p  transcript_id AT4G03590.1  
At4g03600	chr4:001603820	0.0	C/1603820-1604308	AT4G03600.1  CDS  gene_syn T5L23.9, T5L23_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03730.1); Has 27 Blast hits to 27 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G03600.1p  transcript_id AT4G03600.1  protein_id AT4G03600.1p  transcript_id AT4G03600.1  
At4g03610	chr4:001605039	0.0	W/1605039-1605205,1605490-1605586,1605735-1605865,1605963-1606104,1606193-1606298,1606397-1606461,1606542-1606577,1606672-1606781,1606860-1606917	AT4G03610.1  CDS  gene_syn T5L23.10, T5L23_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30300.1); Has 1667 Blast hits to 1658 proteins in 397 species: Archae - 10; Bacteria - 674; Metazoa - 0; Fungi - 17; Plants - 55; Viruses - 0; Other Eukaryotes - 911 (source: NCBI BLink).  protein_id AT4G03610.1p  transcript_id AT4G03610.1  protein_id AT4G03610.1p  transcript_id AT4G03610.1  
At4g03620	chr4:001608593	0.0	C/1608593-1608665,1607984-1608124,1607040-1607854	AT4G03620.1  CDS  gene_syn T5L23.11, T5L23_11  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function molecular_function|GO:0003674||ND  product myosin heavy chain-related  note myosin heavy chain-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cyclopentenone; EXPRESSED IN: leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; Has 1659 Blast hits to 1333 proteins in 204 species: Archae - 20; Bacteria - 116; Metazoa - 744; Fungi - 128; Plants - 22; Viruses - 4; Other Eukaryotes - 625 (source: NCBI BLink).  protein_id AT4G03620.1p  transcript_id AT4G03620.1  protein_id AT4G03620.1p  transcript_id AT4G03620.1  
At4g03630	chr4:001608750	0.0	W/1608750-1608802,1608994-1609119,1609554-1610037	AT4G03630.1  CDS  gene_syn T5L23.12, T5L23_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product root nodule development protein-related  note root nodule development protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: F-box family protein (FBL21) (TAIR:AT4G05470.1); Has 875 Blast hits to 678 proteins in 76 species: Archae - 0; Bacteria - 6; Metazoa - 435; Fungi - 30; Plants - 362; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT4G03630.1p  transcript_id AT4G03630.1  protein_id AT4G03630.1p  transcript_id AT4G03630.1  
At4g03635	chr4:001612035	0.0	W/1612035-1612081,1612394-1612613	AT4G03635.1  CDS  product unknown protein  note BEST Arabidopsis thaliana protein match is: F-box family protein (FBL21) (TAIR:AT4G05470.1); Has 71 Blast hits to 70 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G03635.1p  transcript_id AT4G03635.1  protein_id AT4G03635.1p  transcript_id AT4G03635.1  
At4g03640	chr4:001614814	0.0	W/1614814-1618128	AT4G03640.1  mRNA_TE_gene  pseudo  gene_syn T5L23.14, T5L23_14  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G43100.1); similar to hypothetical protein 31.t00031 [Brassica oleracea] (GB:ABD65118.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At4g03650	chr4:001619563	0.0	W/1619563-1624141	AT4G03650.1  mRNA_TE_gene  pseudo  gene_syn T5L23.15, T5L23_15  note Transposable element gene, gypsy-like retrotransposon family, has a 1.3e-314 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At4g03660	chr4:001625146	0.0	W/1625146-1625895	AT4G03660.1  mRNA_TE_gene  pseudo  gene_syn T5L23.16, T5L23_16  note Transposable element gene, similar to replication protein-related [Arabidopsis thaliana] (TAIR:AT4G07440.1); similar to replication protein-related [Arabidopsis thaliana] (TAIR:AT2G05880.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At4g03670	chr4:001626629	0.0	W/1626629-1627737	AT4G03670.1  mRNA_TE_gene  pseudo  gene_syn T5L23.17, T5L23_17  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G10836.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340)  
At4g03680	chr4:001628885	0.0	W/1628885-1629936	AT4G03680.1  mRNA_TE_gene  pseudo  gene_syn T5L23.18, T5L23_18  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30560.1)  
At4g03690	chr4:001631727	0.0	W/1631727-1634900	AT4G03690.1  mRNA_TE_gene  pseudo  gene_syn T5L23.19, T5L23_19  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30560.1); similar to hypothetical protein 31.t00030 [Brassica oleracea] (GB:ABD65117.1); contains InterPro domain Protein of unknown function DUF889, eukaryote; (InterPro:IPR010285)  
At4g03695	chr4:001637775	0.0	C/1637775-1638582	AT4G03695.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At4g03700	chr4:001641459	0.0	C/1641459-1642358	AT4G03700.1  mRNA_TE_gene  pseudo  gene_syn T5L23.20, T5L23_20  note Transposable element gene, pseudogene, replication protein-related, similar to immunoglobulin heavy chain variable region (GI:4456528) (Homo sapiens);  
At4g03710	chr4:001642840	0.0	W/1642840-1646823	AT4G03710.1  mRNA_TE_gene  pseudo  gene_syn T5L23.22, T5L23_22  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 1.8e-111 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays)  
At4g03720	chr4:001649053	0.0	W/1649053-1649442	AT4G03720.1  mRNA_TE_gene  pseudo  gene_syn T5L23.23, T5L23_23  note Transposable element gene, pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 44% identity and 1.5e-21 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}  
At4g03723	chr4:001649997	0.0	C/1649997-1650104,1649665-1649817	AT4G03723.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: MED21 (MEDIATOR 21) (TAIR:AT4G04780.2).  protein_id AT4G03723.1p  transcript_id AT4G03723.1  protein_id AT4G03723.1p  transcript_id AT4G03723.1  
At4g03726	chr4:001650717	0.0	C/1650717-1651979	AT4G03726.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g03728	chr4:001652884	0.0	C/1652884-1652976,1652488-1652686,1652242-1652375	AT4G03728.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT4G03728.1p  transcript_id AT4G03728.1  protein_id AT4G03728.1p  transcript_id AT4G03728.1  
At4g03730	chr4:001653587	0.0	C/1653587-1655944	AT4G03730.1  mRNA_TE_gene  pseudo  gene_syn T5L23.24, T5L23_24  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 1.3e-102 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays)  
At4g03732	chr4:001656722	0.0	C/1656722-1657380	AT4G03732.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g03740	chr4:001663433	0.0	C/1663433-1663515,1663226-1663355,1662857-1663142,1662595-1662782,1662325-1662523,1661992-1662143	AT4G03740.1  CDS  gene_syn T5L23.25, T5L23_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30 Blast hits to 29 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G03740.1p  transcript_id AT4G03740.1  protein_id AT4G03740.1p  transcript_id AT4G03740.1  
At4g03745	chr4:001665242	0.0	C/1665242-1667033	AT4G03745.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 9.4e-105 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At4g03750	chr4:001667204	0.0	W/1667204-1668888	AT4G03750.1  mRNA_TE_gene  pseudo  gene_syn T5L23.27, T5L23_27  note Transposable element gene, similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G16900.1)  
At4g03760	chr4:001670638	0.0	W/1670638-1673055	AT4G03760.1  mRNA_TE_gene  pseudo  gene_syn T5L23.28, T5L23_28  function pseudogene of unknown protein  note Transposable element gene, pseudogene, expressed protein  
At4g03770	chr4:001673685	0.0	C/1673685-1679372	AT4G03770.2  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 2.8e-206 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays)  
At4g03775	chr4:001680653	0.0	C/1680653-1682830	AT4G03775.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 9.9e-25 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)  
At4g03780	chr4:001683483	0.0	C/1683483-1685576	AT4G03780.1  mRNA_TE_gene  pseudo  gene_syn T5H22.3, T5H22_3  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.9e-59 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g03790	chr4:001688258	0.0	C/1688258-1694030	AT4G03790.1  mRNA_TE_gene  pseudo  gene_syn T5H22.4, T5H22_4  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.2e-286 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g03795	chr4:001695206	0.0	C/1695206-1697152	AT4G03795.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.2e-111 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g03800	chr4:001743791	0.0	C/1743791-1748332	AT4G03800.1  mRNA_TE_gene  pseudo  gene_syn T5H22.5, T5H22_5  note Transposable element gene, gypsy-like retrotransposon family, has a 1.5e-125 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At4g03810	chr4:001751259	0.0	W/1751259-1754393	AT4G03810.1  mRNA_TE_gene  pseudo  gene_syn T7M24.7, T7M24_7  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element)  
At4g03811	chr4:001756584	0.0	W/1756584-1757097	AT4G03811.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G03811.1  
At4g03813	chr4:001761953	0.0	W/1761953-1763902	AT4G03813.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 3.1e-16 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At4g03816	chr4:001764934	0.0	C/1764934-1769859	AT4G03816.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 8.6e-22 P-value blast match to GB:BAA11674 ORF(AA 1-1338) (Ty1_Copia-element) (Nicotiana tabacum)  
At4g03820	chr4:001773976	0.0	C/1773976-1774380,1772835-1773287,1772440-1772755,1772163-1772350	AT4G03820.2  CDS  gene_syn T7M24.8, T7M24_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22270.1); Has 80 Blast hits to 80 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G03820.2p  transcript_id AT4G03820.2  protein_id AT4G03820.2p  transcript_id AT4G03820.2  
At4g03820	chr4:001773976	0.0	C/1773976-1774380,1772835-1773287,1772440-1772755,1772225-1772350,1772114-1772127	AT4G03820.1  CDS  gene_syn T7M24.8, T7M24_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22270.1); Has 80 Blast hits to 80 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G03820.1p  transcript_id AT4G03820.1  protein_id AT4G03820.1p  transcript_id AT4G03820.1  
At4g03823	chr4:001779926	0.0	W/1779926-1780528	AT4G03823.1  pseudogenic_transcript  pseudo  function pseudogene of unknown protein  note expressed protein  
At4g03824	chr4:001782462	0.0	W/1782462-1783625	AT4G03824.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mariner-like transposase family, has a 1.5e-62 P-value blast match to GB:AAC28384 mariner transposase (Mariner_TC1-element) (Glycine max)  
At4g03827	chr4:001784402	0.0	C/1784402-1784530	AT4G03827.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G03827.1p  transcript_id AT4G03827.1  protein_id AT4G03827.1p  transcript_id AT4G03827.1  
At4g03825	chr4:001786548	0.0	W/1786548-1787183	AT4G03825.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g03826	chr4:001788361	0.0	W/1788361-1789336	AT4G03826.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.2e-123 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g03830	chr4:001790440	0.0	W/1790440-1791004,1791101-1791699,1791769-1791966,1792084-1792458	AT4G03830.1  CDS  gene_syn T7M24.5, T7M24_5  go_component nucleus|GO:0005634|14617066|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product myosin heavy chain-related  note myosin heavy chain-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: root, carpel; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF601 (InterPro:IPR006736); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51172.1); Has 2028 Blast hits to 1693 proteins in 222 species: Archae - 2; Bacteria - 128; Metazoa - 1124; Fungi - 174; Plants - 139; Viruses - 4; Other Eukaryotes - 457 (source: NCBI BLink).  protein_id AT4G03830.1p  transcript_id AT4G03830.1  protein_id AT4G03830.1p  transcript_id AT4G03830.1  
At4g03835	chr4:001793326	0.0	C/1793326-1795289	AT4G03835.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 6.1e-78 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At4g03837	chr4:001795718	0.0	W/1795718-1796188	AT4G03837.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.0e-09 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g03840	chr4:001797476	0.0	W/1797476-1801473	AT4G03840.1  mRNA_TE_gene  pseudo  gene_syn T7M24.4, T7M24_4  note Transposable element gene, gypsy-like retrotransposon family, has a 2.4e-251 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At4g03850	chr4:001804746	0.0	W/1804746-1806300	AT4G03850.1  mRNA_TE_gene  pseudo  gene_syn T7M24.3, T7M24_3  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.8e-131 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g03860	chr4:001806588	0.0	W/1806588-1809637	AT4G03860.1  mRNA_TE_gene  pseudo  gene_syn T7M24.11, T7M24_11  note Transposable element gene, transposon protein -related, similar to athila retroelement  
At4g03865	chr4:001811323	0.0	W/1811323-1812054	AT4G03865.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g03870	chr4:001813009	0.0	W/1813009-1815342	AT4G03870.1  mRNA_TE_gene  pseudo  gene_syn T7M24.1, T7M24_1  note Transposable element gene, Mutator-like transposase family, has a 1.1e-61 P-value blast match to O81510 /24-166 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g03873	chr4:001819336	0.0	W/1819336-1820361	AT4G03873.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 8.5e-06 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At4g03876	chr4:001823795	0.0	C/1823795-1824970	AT4G03876.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g03880	chr4:001828256	0.0	C/1828256-1830001	AT4G03880.1  mRNA_TE_gene  pseudo  gene_syn T25H8.4, T25H8_4  note Transposable element gene, pseudogene, hypothetical protein  
At4g03885	chr4:001831192	0.0	C/1831192-1834197	AT4G03885.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.9e-192 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g03890	chr4:001836410	0.0	W/1836410-1837818	AT4G03890.1  mRNA_TE_gene  pseudo  gene_syn T25H8.3, T25H8_3  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G23480.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048)  
At4g03900	chr4:001838791	0.0	W/1838791-1842694	AT4G03900.1  mRNA_TE_gene  pseudo  gene_syn T25H8.2, T25H8_2  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 3.9e-150 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At4g03910	chr4:001843451	0.0	W/1843451-1845822	AT4G03910.1  mRNA_TE_gene  pseudo  gene_syn T25H8.1, T25H8_1  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 4.9e-39 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At4g03911	chr4:001847090	0.0	C/1847090-1847563	AT4G03911.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g03912	chr4:001848889	0.0	C/1848889-1850019	AT4G03912.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g03914	chr4:001850393	0.0	W/1850393-1850695	AT4G03914.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G30520; unknown protein  
At4g03913	chr4:001851305	0.0	C/1851305-1851949	AT4G03913.1  pseudogenic_transcript  pseudo  note pseudogene, Ulp1 protease family, contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain  
At4g03916	chr4:001852259	0.0	W/1852259-1853094	AT4G03916.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G31980.1); similar to hypothetical protein 31.t00030 [Brassica oleracea] (GB:ABD65117.1); contains InterPro domain Protein of unknown function DUF889, eukaryote; (InterPro:IPR010285)  
At4g03920	chr4:001855717	0.0	W/1855717-1861200	AT4G03920.1  mRNA_TE_gene  pseudo  gene_syn T24M8.9, T24M8_9  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 9.1e-40 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)  
At4g03923	chr4:001865833	0.0	W/1865833-1866558	AT4G03923.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g03926	chr4:001867902	0.0	W/1867902-1868186	AT4G03926.1  pseudogenic_transcript  pseudo  note pseudogene, similar to Pectinesterase 3 precursor (EC 3.1.1.11) (Pectin methylesterase 3) (PE 3). (Tomato), blastp match of 61% identity and 9.6e-28 P-value to SP|Q96576|PME3_LYCES Pectinesterase 3 precursor (EC 3.1.1.11) (Pectin methylesterase 3) (PE 3). (Tomato) {Lycopersicon esculentum}  
At4g03935	chr4:001869052	0.0	C/1869052-1874687	AT4G03935.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G03935.1  
At4g03930	chr4:001870422	0.0	W/1870422-1871045,1871330-1871594,1871702-1872387	AT4G03930.1  CDS  gene_syn T24M8.6, T24M8_6  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product enzyme inhibitor/ pectinesterase  note enzyme inhibitor/ pectinesterase; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase inhibitor (InterPro:IPR006501), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectin methylesterase, putative (TAIR:AT1G11590.1); Has 1311 Blast hits to 1282 proteins in 211 species: Archae - 0; Bacteria - 311; Metazoa - 1; Fungi - 129; Plants - 869; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G03930.1p  transcript_id AT4G03930.1  protein_id AT4G03930.1p  transcript_id AT4G03930.1  
At4g03940	chr4:001873624	0.0	W/1873624-1873794,1873852-1873993,1874041-1874272,1874750-1874861,1874911-1874967,1875015-1875233	AT4G03940.1  CDS  gene_syn T24M8.7, T24M8_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 8 Blast hits to 8 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G03940.1p  transcript_id AT4G03940.1  protein_id AT4G03940.1p  transcript_id AT4G03940.1  
At4g03945	chr4:001877888	0.0	W/1877888-1878171,1878376-1878466	AT4G03945.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  product enzyme inhibitor/ pectinesterase  note enzyme inhibitor/ pectinesterase; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: enzyme inhibitor/ pectinesterase (TAIR:AT1G11593.1); Has 20 Blast hits to 13 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G03945.2p  transcript_id AT4G03945.2  protein_id AT4G03945.2p  transcript_id AT4G03945.2  
At4g03945	chr4:001877888	0.0	W/1877888-1878466	AT4G03945.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  product enzyme inhibitor/ pectinesterase  note enzyme inhibitor/ pectinesterase; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: enzyme inhibitor/ pectinesterase (TAIR:AT1G11593.1); Has 46 Blast hits to 44 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G03945.1p  transcript_id AT4G03945.1  protein_id AT4G03945.1p  transcript_id AT4G03945.1  
At4g03950	chr4:001879518	0.0	W/1879518-1879568,1879821-1879964,1880168-1880303,1880351-1880395,1880493-1880718,1880818-1880871,1880934-1881111	AT4G03950.1  CDS  gene_syn T24M8.5, T24M8_5  go_process hexose phosphate transport|GO:0015712||ISS  go_function glucose transmembrane transporter activity|GO:0005355||ISS  go_function glucose-6-phosphate transmembrane transporter activity|GO:0015152||ISS  product glucose-6-phosphate/phosphate translocator, putative  note glucose-6-phosphate/phosphate translocator, putative; FUNCTIONS IN: glucose-6-phosphate transmembrane transporter activity, glucose transmembrane transporter activity; INVOLVED IN: hexose phosphate transport; EXPRESSED IN: stem, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: GPT2; antiporter/ glucose-6-phosphate transmembrane transporter (TAIR:AT1G61800.1); Has 530 Blast hits to 529 proteins in 115 species: Archae - 0; Bacteria - 2; Metazoa - 104; Fungi - 7; Plants - 359; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT4G03950.1p  transcript_id AT4G03950.1  protein_id AT4G03950.1p  transcript_id AT4G03950.1  
At4g03960	chr4:001887673	0.0	W/1887673-1887866,1888075-1888168,1888493-1888550,1888664-1888707,1888794-1889000	AT4G03960.1  CDS  gene_syn T24M8.4, T24M8_4  go_process dephosphorylation|GO:0016311||IEA  go_function protein tyrosine phosphatase activity|GO:0004725||IEA  go_function phosphatase activity|GO:0016791||IEA  go_component cellular_component|GO:0005575||ND  go_function phosphoprotein phosphatase activity|GO:0004721||ISS  product tyrosine specific protein phosphatase family protein  note tyrosine specific protein phosphatase family protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Protein-tyrosine phosphatase (InterPro:IPR000387), Protein-tyrosine phosphatase, SIW14-like (InterPro:IPR004861); BEST Arabidopsis thaliana protein match is: tyrosine specific protein phosphatase family protein (TAIR:AT1G05000.1); Has 455 Blast hits to 446 proteins in 102 species: Archae - 0; Bacteria - 36; Metazoa - 1; Fungi - 254; Plants - 83; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).  protein_id AT4G03960.1p  transcript_id AT4G03960.1  protein_id AT4G03960.1p  transcript_id AT4G03960.1  
At4g03965	chr4:001889576	0.0	W/1889576-1890205	AT4G03965.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G22250.1); Has 940 Blast hits to 940 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 528; Fungi - 48; Plants - 178; Viruses - 32; Other Eukaryotes - 154 (source: NCBI BLink).  protein_id AT4G03965.1p  transcript_id AT4G03965.1  protein_id AT4G03965.1p  transcript_id AT4G03965.1  
At4g03970	chr4:001892890	0.0	W/1892890-1897940	AT4G03970.1  mRNA_TE_gene  pseudo  gene_syn T24M8.3, T24M8_3  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G10350.1); similar to Ulp1 protease family [Arabidopsis thaliana] (TAIR:AT3G42530.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G44880.1); similar to hypothetical protein 23.t00036 [Brassica oleracea] (GB:ABD65624.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At4g03975	chr4:001898455	0.0	C/1898455-1898841	AT4G03975.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G36060.1)  
At4g03976	chr4:001899711	0.0	W/1899711-1900085	AT4G03976.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g03977	chr4:001900769	0.0	W/1900769-1901657	AT4G03977.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G44860.1); similar to hypothetical protein 31.t00082 [Brassica oleracea] (GB:ABD65101.1); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At4g03978	chr4:001902619	0.0	W/1902619-1903563	AT4G03978.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g03979	chr4:001904026	0.0	W/1904026-1904811	AT4G03979.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G36035.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35100.1)  
At4g03981	chr4:001905878	0.0	C/1905878-1908724	AT4G03981.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 5.8e-62 P-value blast match to Q9S9L6 /322-461 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g03980	chr4:001911557	0.0	W/1911557-1913525	AT4G03980.1  mRNA_TE_gene  pseudo  gene_syn T24M8.2, T24M8_2  note Transposable element gene, Mutator-like transposase family, has a 4.0e-80 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g03990	chr4:001916461	0.0	C/1916461-1917816	AT4G03990.1  mRNA_TE_gene  pseudo  gene_syn T24H24.2, T24H24_2  note Transposable element gene, similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT1G32830.1); similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT2G04970.1); similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT2G14140.1); similar to Agenet domain containing protein [Brassica oleracea] (GB:ABD65016.1); contains domain HIPIP (high potential iron protein) (SSF57652)  
At4g04000	chr4:001920423	0.0	W/1920423-1925005	AT4G04000.1  mRNA_TE_gene  pseudo  gene_syn T24H24.17, T24H24_17  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.6e-39 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At4g04010	chr4:001925652	0.0	C/1925652-1930396	AT4G04010.1  mRNA_TE_gene  pseudo  gene_syn T24H24.3, T24H24_3  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G47260.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G14130.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G44500.1); similar to hypothetical protein 26.t00072 [Brassica oleracea] (GB:ABD65017.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At4g04020	chr4:001932161	0.0	W/1932161-1932606,1932949-1933144,1933232-1933546	AT4G04020.1  CDS  gene_syn FIB, FIBRILLIN, T24H24.16, T24H24_16  gene FIB  function Fibrillin precursor protein. The fibrillin preprotein, but not the mature protein interacts with ABI2. Regulated by abscisic acid response regulators. Involved in abscisic acid-mediated photoprotection.  go_component nucleus|GO:0005634|14617066|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_function structural molecule activity|GO:0005198||IEA  go_component plastoglobule|GO:0010287|16461379|IDA  go_component stromule|GO:0010319|16923014|IDA  go_process response to cold|GO:0009409|16923014|IEP  go_process response to abscisic acid stimulus|GO:0009737|16571665|IEP  go_process photoinhibition|GO:0010205|16571665|IMP  go_function structural molecule activity|GO:0005198||ISS  product FIB (FIBRILLIN); structural molecule  note FIBRILLIN (FIB); FUNCTIONS IN: structural molecule activity; INVOLVED IN: photoinhibition, response to cold, response to abscisic acid stimulus; LOCATED IN: in 8 components; EXPRESSED IN: fruit, guard cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: PAP fibrillin (InterPro:IPR006843); BEST Arabidopsis thaliana protein match is: plastid-lipid associated protein PAP, putative (TAIR:AT4G22240.1); Has 283 Blast hits to 283 proteins in 64 species: Archae - 0; Bacteria - 66; Metazoa - 0; Fungi - 0; Plants - 208; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT4G04020.1p  transcript_id AT4G04020.1  protein_id AT4G04020.1p  transcript_id AT4G04020.1  
At4g04030	chr4:001937462	0.0	C/1937462-1937843,1937108-1937112	AT4G04030.1  CDS  gene_syn ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 9, ATOFP9, OFP9, T24H24.4, T24H24_4  gene OFP9  product OFP9 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 9)  note OFP9 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 9); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54730.4); Has 173 Blast hits to 171 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 164; Viruses - 3; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G04030.1p  transcript_id AT4G04030.1  protein_id AT4G04030.1p  transcript_id AT4G04030.1  
At4g04040	chr4:001939250	0.0	W/1939250-1939448,1939552-1939713,1939805-1939926,1940490-1940543,1940633-1940739,1940826-1940931,1941011-1941074,1941156-1941244,1941341-1941472,1941566-1941736,1941850-1941965,1942045-1942156,1942246-1942330,1942410-1942454,1942525-1942593,1942689-1942765	AT4G04040.1  CDS  gene_syn MEE51, T24H24.15, T24H24_15, maternal effect embryo arrest 51  gene MEE51  go_component pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex|GO:0010318||ISS  go_process glycolysis|GO:0006096||ISS  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function diphosphate-fructose-6-phosphate 1-phosphotransferase activity|GO:0047334||ISS  product MEE51 (maternal effect embryo arrest 51); diphosphate-fructose-6-phosphate 1-phosphotransferase  note maternal effect embryo arrest 51 (MEE51); FUNCTIONS IN: diphosphate-fructose-6-phosphate 1-phosphotransferase activity; INVOLVED IN: embryonic development ending in seed dormancy, glycolysis; LOCATED IN: pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase PfpB (InterPro:IPR011183), Phosphofructokinase (InterPro:IPR000023); BEST Arabidopsis thaliana protein match is: pyrophosphate--fructose-6-phosphate 1-phosphotransferase beta subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative (TAIR:AT1G12000.1); Has 3708 Blast hits to 3638 proteins in 1036 species: Archae - 20; Bacteria - 2375; Metazoa - 96; Fungi - 85; Plants - 236; Viruses - 2; Other Eukaryotes - 894 (source: NCBI BLink).  protein_id AT4G04040.1p  transcript_id AT4G04040.1  protein_id AT4G04040.1p  transcript_id AT4G04040.1  
At4g04050	chr4:001944378	0.0	W/1944378-1950431	AT4G04050.1  mRNA_TE_gene  pseudo  gene_syn T24H24.13, T24H24_13  note Transposable element gene, gypsy-like retrotransposon family, has a 2.2e-207 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays)  
At4g04070	chr4:001951542	0.0	C/1951542-1954608	AT4G04070.1  mRNA_TE_gene  pseudo  gene_syn T24H24.5, T24H24_5  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30810.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07530.1); similar to myosin heavy chain-related [Arabidopsis thaliana] (TAIR:AT4G08113.1); similar to hypothetical protein 26.t00052 [Brassica oleracea] (GB:ABD65035.1); contains InterPro domain Protein of unknown function DUF1633; (InterPro:IPR012436)  
At4g04077	chr4:001961139	0.0	W/1961139-1961892	AT4G04077.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT4G04078  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G04077.1  
At4g04078	chr4:001961640	0.0	C/1961640-1961747	AT4G04078.1  CDS  product unknown protein  note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G42148.1); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G04078.1p  transcript_id AT4G04078.1  protein_id AT4G04078.1p  transcript_id AT4G04078.1  
At4g04080	chr4:001963386	0.0	W/1963386-1963677,1963941-1963995,1964140-1964308	AT4G04080.1  CDS  gene_syn ATISU3, ISCU-LIKE 3, ISU3, T24H24.11, T24H24_11  gene ISU3  function Encodes a mitochondrial protein similar to E.coli IscU. In bacteria, IscU is a scaffold protein accepting sulfur and iron to build a transient Fe-S cluster,which is subsequently transferred to a target apoprotein.  go_component mitochondrion|GO:0005739|15792798|IDA  go_process iron-sulfur cluster assembly|GO:0016226|15792798|IGI  go_process iron-sulfur cluster assembly|GO:0016226||ISS  go_function structural molecule activity|GO:0005198|15792798|ISS  product ISU3 (ISCU-LIKE 3); structural molecule  note ISCU-LIKE 3 (ISU3); FUNCTIONS IN: structural molecule activity; INVOLVED IN: iron-sulfur cluster assembly; LOCATED IN: mitochondrion; EXPRESSED IN: leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: NIF system FeS cluster assembly, NifU, N-terminal (InterPro:IPR002871), ISC system FeS cluster assembly, IscU scaffold (InterPro:IPR011339); BEST Arabidopsis thaliana protein match is: ISU1; structural molecule (TAIR:AT4G22220.1); Has 3605 Blast hits to 3605 proteins in 1080 species: Archae - 68; Bacteria - 1980; Metazoa - 117; Fungi - 105; Plants - 54; Viruses - 0; Other Eukaryotes - 1281 (source: NCBI BLink).  protein_id AT4G04080.1p  transcript_id AT4G04080.1  protein_id AT4G04080.1p  transcript_id AT4G04080.1  
At4g04090	chr4:001964980	0.0	W/1964980-1965114,1965207-1965650	AT4G04090.1  CDS  gene_syn T24H24.21, T24H24_21  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_function protein binding|GO:0005515||ISS  product speckle-type POZ protein-related  note speckle-type POZ protein-related; FUNCTIONS IN: protein binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: speckle-type POZ protein-related (TAIR:AT2G40450.1); Has 1362 Blast hits to 1356 proteins in 69 species: Archae - 0; Bacteria - 0; Metazoa - 980; Fungi - 0; Plants - 339; Viruses - 5; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT4G04090.1p  transcript_id AT4G04090.1  protein_id AT4G04090.1p  transcript_id AT4G04090.1  
At4g04100	chr4:001966652	0.0	W/1966652-1967584	AT4G04100.1  mRNA_TE_gene  pseudo  gene_syn T24H24.20, T24H24_20  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 2.6e-16 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At4g04105	chr4:001969059	0.0	W/1969059-1972381	AT4G04105.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.1e-179 P-value blast match to reverse transcriptase (Ty1_Copia-element) (Arabidopsis thaliana)  
At4g04110	chr4:001972591	0.0	W/1972591-1972619,1973198-1973731,1973817-1973898,1973940-1974014	AT4G04110.1  CDS  gene_syn T24H24.18, T24H24_18  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_process defense response|GO:0006952||ISS  product Toll-Interleukin-Resistance (TIR) domain-containing protein  note Toll-Interleukin-Resistance (TIR) domain-containing protein; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, 4 leaf senescence stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G46470.1); Has 857 Blast hits to 803 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 857; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G04110.1p  transcript_id AT4G04110.1  protein_id AT4G04110.1p  transcript_id AT4G04110.1  
At4g04120	chr4:001975544	0.0	W/1975544-1976947	AT4G04120.1  mRNA_TE_gene  pseudo  gene_syn T24H24.19, T24H24_19  note Transposable element gene, copia-like retrotransposon family, has a 3.8e-19 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element)  
At4g04130	chr4:001977183	0.0	W/1977183-1982785	AT4G04130.1  mRNA_TE_gene  pseudo  gene_syn T24H24.9, T24H24_9  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G42690.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G20750.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD65034.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At4g04140	chr4:001984439	0.0	C/1984439-1988845	AT4G04140.1  mRNA_TE_gene  pseudo  gene_syn T24H24.6, T24H24_6  note Transposable element gene, Mutator-like transposase family, has a 1.3e-78 P-value blast match to Q9ZQM3 /24-192 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g04145	chr4:001989668	0.0	W/1989668-1993894	AT4G04145.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.8e-189 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)  
At4g04150	chr4:001997562	0.0	W/1997562-1998900	AT4G04150.1  mRNA_TE_gene  pseudo  gene_syn T24H24.7, T24H24_7  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.0e-27 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g04155	chr4:002002064	0.0	W/2002064-2002492	AT4G04155.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28130.1)  
At4g04157	chr4:002003734	0.0	W/2003734-2007753	AT4G04157.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 7.4e-202 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At4g04165	chr4:002008368	0.0	C/2008368-2009678	AT4G04165.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g04167	chr4:002010990	0.0	W/2010990-2012703	AT4G04167.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 3.0e-60 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)  
At4g04170	chr4:002013697	0.0	W/2013697-2018328	AT4G04170.1  mRNA_TE_gene  pseudo  gene_syn T27D20.16, T27D20_16  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 2.3e-87 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At4g04175	chr4:002018788	0.0	W/2018788-2019963	AT4G04175.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to putative reverse transcriptase, blastp match of 28% identity and 7.7e-08 P-value to GP|14018103|gb|AAK52166.1|AC084831_20|AC084831 putative reverse transcriptase {Oryza sativa}  
At4g04180	chr4:002020471	0.0	W/2020471-2020594,2020851-2021002,2021105-2021293,2021415-2021545,2021642-2021768,2021858-2022120,2022196-2022320,2022406-2022449,2022535-2022666,2022763-2022840,2022932-2023014,2023103-2023225,2023362-2023422,2023476-2023673	AT4G04180.1  CDS  gene_syn T27D20.13, T27D20_13  go_component mitochondrion|GO:0005739||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATPase activity|GO:0016887||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, embryo, pedicel, flower, seed; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: cell division cycle protein 48, putative / CDC48, putative (TAIR:AT3G53230.1); Has 21649 Blast hits to 20150 proteins in 1744 species: Archae - 853; Bacteria - 6915; Metazoa - 3915; Fungi - 2439; Plants - 1410; Viruses - 16; Other Eukaryotes - 6101 (source: NCBI BLink).  protein_id AT4G04180.1p  transcript_id AT4G04180.1  protein_id AT4G04180.1p  transcript_id AT4G04180.1  
At4g04190	chr4:002024873	0.0	W/2024873-2024879,2025180-2025329,2025419-2025492,2025605-2025723,2025885-2025968,2026210-2026330	AT4G04190.1  CDS  gene_syn T27D20.12, T27D20_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 13 growth stages; Has 23 Blast hits to 23 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G04190.1p  transcript_id AT4G04190.1  protein_id AT4G04190.1p  transcript_id AT4G04190.1  
At4g04190	chr4:002024873	0.0	W/2024873-2024879,2025180-2025329,2025419-2025492,2025605-2025723,2025885-2025968,2026210-2026330	AT4G04190.2  CDS  gene_syn T27D20.12, T27D20_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 13 growth stages; Has 23 Blast hits to 23 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G04190.2p  transcript_id AT4G04190.2  protein_id AT4G04190.2p  transcript_id AT4G04190.2  
At4g04200	chr4:002027165	0.0	W/2027165-2027266,2027343-2027452,2027700-2027814,2028528-2028670,2028764-2028866	AT4G04200.1  CDS  gene_syn T27D20.11, T27D20_11  go_component signal peptidase complex|GO:0005787||IEA  go_component integral to membrane|GO:0016021||IEA  go_process signal peptide processing|GO:0006465||IEA  go_function peptidase activity|GO:0008233||IEA  product peptidase  note peptidase; FUNCTIONS IN: peptidase activity; INVOLVED IN: signal peptide processing; LOCATED IN: integral to membrane, signal peptidase complex; EXPRESSED IN: male gametophyte; CONTAINS InterPro DOMAIN/s: Microsomal signal peptidase 25 kDa subunit (InterPro:IPR009582); BEST Arabidopsis thaliana protein match is: microsomal signal peptidase 25 kDa subunit, putative (SPC25) (TAIR:AT2G39960.1); Has 117 Blast hits to 115 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 74; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G04200.1p  transcript_id AT4G04200.1  protein_id AT4G04200.1p  transcript_id AT4G04200.1  
At4g04210	chr4:002030391	0.0	W/2030391-2030536,2030672-2030948,2031022-2031117,2031278-2031670	AT4G04210.1  CDS  gene_syn LANT UBX DOMAIN-CONTAINING PROTEIN 4, PUX4, T27D20.10, T27D20_10  gene PUX4  function Arabidopsis thaliana CDC48-interacting UBX-domain protein (PUX4)  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515|17190830|NAS  product PUX4; protein binding  note PUX4; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012), SEP (InterPro:IPR012989); BEST Arabidopsis thaliana protein match is: PUX3; protein binding (TAIR:AT4G22150.1); Has 533 Blast hits to 531 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 319; Fungi - 99; Plants - 58; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT4G04210.1p  transcript_id AT4G04210.1  protein_id AT4G04210.1p  transcript_id AT4G04210.1  
At4g04220	chr4:002033427	0.0	W/2033427-2034021,2034106-2035946	AT4G04220.1  CDS  gene_syn AtRLP46, Receptor Like Protein 46, T27D20.9, T27D20_9  gene AtRLP46  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  go_function kinase activity|GO:0016301||ISS  product AtRLP46 (Receptor Like Protein 46); kinase/ protein binding  note Receptor Like Protein 46 (AtRLP46); FUNCTIONS IN: protein binding, kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210); BEST Arabidopsis thaliana protein match is: GSO1 (GASSHO1); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT4G20140.1); Has 87324 Blast hits to 22529 proteins in 843 species: Archae - 48; Bacteria - 5739; Metazoa - 32308; Fungi - 1023; Plants - 41698; Viruses - 4; Other Eukaryotes - 6504 (source: NCBI BLink).  protein_id AT4G04220.1p  transcript_id AT4G04220.1  protein_id AT4G04220.1p  transcript_id AT4G04220.1  
At4g04221	chr4:002035159	0.0	C/2035159-2036370	AT4G04221.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT4G04220  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G04221.1  
At4g04223	chr4:002036511	0.0	W/2036511-2037800	AT4G04223.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G04223.1  
At4g04223	chr4:002036605	0.0	W/2036605-2037816	AT4G04223.2  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G04223.2  
At4g04230	chr4:002040381	0.0	C/2040381-2042855	AT4G04230.1  mRNA_TE_gene  pseudo  gene_syn T27D20.2, T27D20_2  note Transposable element gene, gypsy-like retrotransposon family, has a 1.3e-95 P-value blast match to T27D20 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)  
At4g04245	chr4:002043905	0.0	C/2043905-2045173	AT4G04245.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 0.00030 P-value blast match to GB:CAA30503 pol polypeptide (Ty1_Copia-element) (Drosophila melanogaster)  
At4g04250	chr4:002045957	0.0	C/2045957-2048347	AT4G04250.1  pseudogenic_transcript  pseudo  gene_syn T27D20.3, T27D20_3  note pseudogene, hypothetical protein, contains Pfam profile: PF04642 protein of unknown function, DUF601  
At4g04255	chr4:002049355	0.0	C/2049355-2050227	AT4G04255.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to unnamed protein product, blastp match of 37% identity and 5.0e-30 P-value to GP|6815097|dbj|BAA90383.1||AP001081 unnamed protein product {Oryza sativa (japonica cultivar-group)}  
At4g04260	chr4:002054636	0.0	W/2054636-2054961,2055050-2055092,2055355-2055519,2055802-2055849	AT4G04260.1  CDS  gene_syn T27D20.8, T27D20_8  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_function DNA binding|GO:0003677||ISS  product bromo-adjacent homology (BAH) domain-containing protein  note bromo-adjacent homology (BAH) domain-containing protein; FUNCTIONS IN: DNA binding, zinc ion binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Bromo adjacent region (InterPro:IPR001025), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: DNA binding / protein binding / zinc ion binding (TAIR:AT4G22140.2); Has 421 Blast hits to 417 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 235; Fungi - 2; Plants - 153; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT4G04260.1p  transcript_id AT4G04260.1  protein_id AT4G04260.1p  transcript_id AT4G04260.1  
At4g04270	chr4:002057806	0.0	C/2057806-2060252	AT4G04270.1  mRNA_TE_gene  pseudo  gene_syn T27D20.4, T27D20_4  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 9.7e-78 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At4g04273	chr4:002061631	0.0	W/2061631-2062318	AT4G04273.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G36756.1)  
At4g04276	chr4:002063724	0.0	W/2063724-2064128	AT4G04276.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.2e-34 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g04280	chr4:002064677	0.0	C/2064677-2068548	AT4G04280.1  mRNA_TE_gene  pseudo  gene_syn T27D20.5, T27D20_5  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At4g04290	chr4:002068990	0.0	W/2068990-2071773	AT4G04290.1  mRNA_TE_gene  pseudo  gene_syn T27D20.7, T27D20_7  note Transposable element gene, copia-like retrotransposon family, has a 1.8e-94 P-value blast match to GB:AAB82754 retrofit (TY1_Copia-element) (Oryza longistaminata)  
At4g04293	chr4:002076832	0.0	W/2076832-2077361	AT4G04293.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to P0703B11.15, blastp match of 38% identity and 2.2e-25 P-value to GP|18844826|dbj|BAB85296.1||AP003302 P0703B11.15 {Oryza sativa (japonica cultivar-group)}  
At4g04296	chr4:002081829	0.0	W/2081829-2083240	AT4G04296.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.4e-13 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)  
At4g04300	chr4:002086200	0.0	C/2086200-2087758	AT4G04300.1  mRNA_TE_gene  pseudo  gene_syn T19B17.1, T19B17_1  note Transposable element gene, pseudogene, similar to putative helicase, blastp match of 38% identity and 2.6e-40 P-value to GP|21104536|dbj|BAB93131.1||AP003196 putative helicase {Oryza sativa (japonica cultivar-group)}  
At4g04310	chr4:002090168	0.0	W/2090168-2093991	AT4G04310.1  mRNA_TE_gene  pseudo  gene_syn T19B17.2, T19B17_2  note Transposable element gene, pseudogene, zinc knuckle (CCHC type) protein family, contains Pfam domain PF00098: Zinc knuckle  
At4g04315	chr4:002095259	0.0	W/2095259-2096518	AT4G04315.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G04315.1  
At4g04313	chr4:002101583	0.0	W/2101583-2105974	AT4G04313.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 8.8e-52 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)  
At4g04316	chr4:002106461	0.0	C/2106461-2109688	AT4G04316.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 9.6e-40 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At4g04320	chr4:002113565	0.0	W/2113565-2113648,2113882-2113964,2114036-2114126,2114222-2114348,2114435-2114600,2114721-2114865,2114949-2115039,2115121-2115179,2115257-2115334,2115463-2115546,2115638-2115813,2115900-2116028,2116113-2116185,2116268-2116353,2116441-2116525	AT4G04320.1  CDS  gene_syn T19B17.4, T19B17_4  go_process fatty acid biosynthetic process|GO:0006633||IEA  go_function malonyl-CoA decarboxylase activity|GO:0050080||IEA  go_function malonyl-CoA decarboxylase activity|GO:0050080||ISS  product malonyl-CoA decarboxylase family protein  note malonyl-CoA decarboxylase family protein; FUNCTIONS IN: malonyl-CoA decarboxylase activity; INVOLVED IN: fatty acid biosynthetic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Malonyl-CoA decarboxylase (InterPro:IPR007956); Has 994 Blast hits to 911 proteins in 148 species: Archae - 0; Bacteria - 242; Metazoa - 65; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 667 (source: NCBI BLink).  protein_id AT4G04320.1p  transcript_id AT4G04320.1  protein_id AT4G04320.1p  transcript_id AT4G04320.1  
At4g04320	chr4:002113565	0.0	W/2113565-2113648,2113885-2113964,2114036-2114126,2114222-2114348,2114435-2114600,2114721-2114865,2114949-2115039,2115121-2115179,2115257-2115334,2115463-2115546,2115638-2115813,2115900-2116028,2116113-2116185,2116268-2116353,2116441-2116525	AT4G04320.2  CDS  gene_syn T19B17.4, T19B17_4  go_process fatty acid biosynthetic process|GO:0006633||IEA  go_function malonyl-CoA decarboxylase activity|GO:0050080||IEA  go_function malonyl-CoA decarboxylase activity|GO:0050080||ISS  product malonyl-CoA decarboxylase family protein  note malonyl-CoA decarboxylase family protein; FUNCTIONS IN: malonyl-CoA decarboxylase activity; INVOLVED IN: fatty acid biosynthetic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Malonyl-CoA decarboxylase (InterPro:IPR007956); Has 994 Blast hits to 911 proteins in 148 species: Archae - 0; Bacteria - 242; Metazoa - 65; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 667 (source: NCBI BLink).  protein_id AT4G04320.2p  transcript_id AT4G04320.2  protein_id AT4G04320.2p  transcript_id AT4G04320.2  
At4g04330	chr4:002118413	0.0	C/2118413-2118563,2118203-2118297,2118003-2118120,2117038-2117054,2116866-2116928,2116700-2116780	AT4G04330.1  CDS  gene_syn T19B17.5, T19B17_5  product unknown protein  note unknown protein; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 254 Blast hits to 254 proteins in 154 species: Archae - 0; Bacteria - 200; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G04330.1p  transcript_id AT4G04330.1  protein_id AT4G04330.1p  transcript_id AT4G04330.1  
At4g04340	chr4:002123235	0.0	W/2123235-2123548,2123813-2123971,2124075-2124210,2124291-2124392,2124472-2124594,2124675-2124755,2124841-2125181,2125273-2125518,2125606-2125930,2126020-2126253,2126367-2126624	AT4G04340.1  CDS  gene_syn T19B17.6, T19B17_6  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  product early-responsive to dehydration protein-related / ERD protein-related  note early-responsive to dehydration protein-related / ERD protein-related; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: early-responsive to dehydration protein-related / ERD protein-related (TAIR:AT4G22120.5); Has 937 Blast hits to 829 proteins in 136 species: Archae - 0; Bacteria - 2; Metazoa - 161; Fungi - 457; Plants - 259; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT4G04340.1p  transcript_id AT4G04340.1  protein_id AT4G04340.1p  transcript_id AT4G04340.1  
At4g04340	chr4:002123235	0.0	W/2123235-2123548,2123813-2123971,2124075-2124210,2124291-2124392,2124472-2124594,2124675-2124755,2124841-2125181,2125273-2125518,2125606-2125930,2126020-2126253,2126367-2126624	AT4G04340.2  CDS  gene_syn T19B17.6, T19B17_6  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  product early-responsive to dehydration protein-related / ERD protein-related  note early-responsive to dehydration protein-related / ERD protein-related; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: early-responsive to dehydration protein-related / ERD protein-related (TAIR:AT4G22120.5); Has 937 Blast hits to 829 proteins in 136 species: Archae - 0; Bacteria - 2; Metazoa - 161; Fungi - 457; Plants - 259; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT4G04340.2p  transcript_id AT4G04340.2  protein_id AT4G04340.2p  transcript_id AT4G04340.2  
At4g04340	chr4:002123235	0.0	W/2123235-2123548,2123813-2123971,2124075-2124210,2124291-2124392,2124472-2124594,2124675-2124755,2124841-2125181,2125273-2125518,2125606-2125930,2126020-2126253,2126367-2126624	AT4G04340.3  CDS  gene_syn T19B17.6, T19B17_6  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  product early-responsive to dehydration protein-related / ERD protein-related  note early-responsive to dehydration protein-related / ERD protein-related; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: early-responsive to dehydration protein-related / ERD protein-related (TAIR:AT4G22120.5); Has 937 Blast hits to 829 proteins in 136 species: Archae - 0; Bacteria - 2; Metazoa - 161; Fungi - 457; Plants - 259; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT4G04340.3p  transcript_id AT4G04340.3  protein_id AT4G04340.3p  transcript_id AT4G04340.3  
At4g04350	chr4:002128129	0.0	W/2128129-2128508,2128714-2128858,2128950-2129006,2129264-2129383,2129466-2129570,2129687-2129910,2129995-2130061,2130135-2130289,2130365-2130629,2130705-2130899,2130980-2131059,2131271-2131333,2131409-2131490,2131569-2131646,2131727-2131828,2131906-2132078,2132160-2132337,2132411-2132488,2132578-2132709,2132788-2133030	AT4G04350.1  CDS  gene_syn EMB2369, EMBRYO DEFECTIVE 2369, T19B17.7, T19B17_7  gene EMB2369  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function leucine-tRNA ligase activity|GO:0004823||IEA  go_function ATP binding|GO:0005524||IEA  go_component mitochondrion|GO:0005739|16251277|IDA  go_component chloroplast|GO:0009507|16251277|IDA  go_process tRNA aminoacylation for protein translation|GO:0006418||ISS  go_process embryonic development ending in seed dormancy|GO:0009793|16297076|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS  go_function ATP binding|GO:0005524||ISS  product EMB2369 (EMBRYO DEFECTIVE 2369); ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding  note EMBRYO DEFECTIVE 2369 (EMB2369); FUNCTIONS IN: aminoacyl-tRNA ligase activity, nucleotide binding, leucine-tRNA ligase activity, ATP binding; INVOLVED IN: embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial (InterPro:IPR002302), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080); BEST Arabidopsis thaliana protein match is: OVA2 (ovule abortion 2); ATP binding / aminoacyl-tRNA ligase/ isoleucine-tRNA ligase/ nucleotide binding (TAIR:AT5G49030.2); Has 28364 Blast hits to 26241 proteins in 1865 species: Archae - 900; Bacteria - 12390; Metazoa - 742; Fungi - 524; Plants - 168; Viruses - 3; Other Eukaryotes - 13637 (source: NCBI BLink).  protein_id AT4G04350.1p  transcript_id AT4G04350.1  protein_id AT4G04350.1p  transcript_id AT4G04350.1  
At4g04360	chr4:002133680	0.0	C/2133680-2133866,2133563-2133586,2133142-2133461	AT4G04360.1  CDS  gene_syn T19B17.8, T19B17_8  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1068 (InterPro:IPR010471); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05070.1); Has 50 Blast hits to 50 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G04360.1p  transcript_id AT4G04360.1  protein_id AT4G04360.1p  transcript_id AT4G04360.1  
At4g04370	chr4:002134060	0.0	C/2134060-2136249	AT4G04370.1  CDS  gene_syn T19B17.9, T19B17_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G03580.1); Has 17778 Blast hits to 4960 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 44; Fungi - 76; Plants - 17339; Viruses - 0; Other Eukaryotes - 319 (source: NCBI BLink).  protein_id AT4G04370.1p  transcript_id AT4G04370.1  protein_id AT4G04370.1p  transcript_id AT4G04370.1  
At4g04375	chr4:002136444	0.0	W/2136444-2137565	AT4G04375.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At4g04380	chr4:002138604	0.0	W/2138604-2142190	AT4G04380.1  mRNA_TE_gene  pseudo  gene_syn T19B17.10, T19B17_10  note Transposable element gene, copia-like retrotransposon family, has a 7.5e-248 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At4g04390	chr4:002142825	0.0	W/2142825-2147224	AT4G04390.1  mRNA_TE_gene  pseudo  gene_syn T19B17.11, T19B17_11  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G28250.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At4g04392	chr4:002148618	0.0	C/2148618-2150871	AT4G04392.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 4.7e-51 P-value blast match to Q9SHN7 /450-633 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g04393	chr4:002152446	0.0	W/2152446-2154824	AT4G04393.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 4.7e-43 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g04395	chr4:002155288	0.0	W/2155288-2156535	AT4G04395.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g04394	chr4:002157650	0.0	W/2157650-2158105	AT4G04394.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09400.1)  
At4g04396	chr4:002158457	0.0	C/2158457-2159002	AT4G04396.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G43920.1); similar to GRF zinc finger containing protein [Brassica oleracea] (GB:ABD64950.1)  
At4g04398	chr4:002159617	0.0	W/2159617-2160238	AT4G04398.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G45370.1)  
At4g04400	chr4:002161216	0.0	C/2161216-2163867	AT4G04400.1  mRNA_TE_gene  pseudo  gene_syn T19B17.13, T19B17_13  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G45380.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048)  
At4g04402	chr4:002164007	0.0	W/2164007-2164075,2164571-2164701,2164846-2164879,2165037-2165249,2165348-2165404	AT4G04402.1  CDS  go_component cellular_component|GO:0005575||ND  go_function histidine phosphotransfer kinase activity|GO:0009927||ISS  product two-component phosphorelay mediator, putative  note two-component phosphorelay mediator, putative; FUNCTIONS IN: histidine phosphotransfer kinase activity; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2); histidine phosphotransfer kinase/ protein binding / signal transducer (TAIR:AT3G29350.1); Has 129 Blast hits to 128 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G04402.1p  transcript_id AT4G04402.1  protein_id AT4G04402.1p  transcript_id AT4G04402.1  
At4g04404	chr4:002166973	0.0	W/2166973-2167549,2167865-2167980	AT4G04404.1  CDS  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function nucleic acid binding|GO:0003676||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT3G29340.1); Has 3067 Blast hits to 2390 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 2676; Fungi - 0; Plants - 291; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).  protein_id AT4G04404.1p  transcript_id AT4G04404.1  protein_id AT4G04404.1p  transcript_id AT4G04404.1  
At4g04405	chr4:002171191	0.0	C/2171191-2174337	AT4G04405.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 5.6e-50 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)  
At4g04407	chr4:002174765	0.0	C/2174765-2176015	AT4G04407.1  mRNA_TE_gene  pseudo  note Transposable element gene, Ta11 non-LTR retroelement protein -related, temporary automated functional assignment  
At4g04408	chr4:002184059	0.0	C/2184059-2184400	AT4G04408.1  pseudogenic_transcript  pseudo  note pseudogene, similar to Putative histone H2A, blastp match of 79% identity and 3.0e-31 P-value to GP|22773254|gb|AAN06860.1||AC105729 Putative histone H2A {Oryza sativa (japonica cultivar-group)}  
At4g04409	chr4:002184420	0.0	W/2184420-2184717	AT4G04409.1  pseudogenic_transcript  pseudo  function Pseudogene of AT3G54560; HTA11; DNA binding protein  
At4g04410	chr4:002189515	0.0	W/2189515-2193763	AT4G04410.1  mRNA_TE_gene  pseudo  gene_syn T26N6.2, T26N6_2  note Transposable element gene, copia-like retrotransposon family, has a 1.7e-176 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)  
At4g04420	chr4:002200351	0.0	C/2200351-2203377	AT4G04420.1  mRNA_TE_gene  pseudo  gene_syn T26N6.3, T26N6_3  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At4g04423	chr4:002203424	0.0	W/2203424-2203524,2203773-2203876,2203999-2204264	AT4G04423.1  CDS  go_process cell wall macromolecule catabolic process|GO:0016998||IEA  go_function endo-1,3(4)-beta-glucanase activity|GO:0033903||IEA  go_component cellular_component|GO:0005575||ND  product endo-1,3(4)-beta-glucanase  note endo-1,3(4)-beta-glucanase; FUNCTIONS IN: endo-1,3(4)-beta-glucanase activity; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 81 (InterPro:IPR005200); Has 13 Blast hits to 13 proteins in 6 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT4G04423.1p  transcript_id AT4G04423.1  protein_id AT4G04423.1p  transcript_id AT4G04423.1  
At4g04426	chr4:002206409	0.0	W/2206409-2208498	AT4G04426.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 4.7e-149 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At4g04430	chr4:002208776	0.0	C/2208776-2210863	AT4G04430.1  mRNA_TE_gene  pseudo  gene_syn T26N6.4, T26N6_4  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 8.6e-122 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At4g04440	chr4:002212146	0.0	W/2212146-2214394	AT4G04440.1  mRNA_TE_gene  pseudo  gene_syn T26N6.5, T26N6_5  note Transposable element gene, copia-like retrotransposon family, has a 1.3e-215 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At4g04450	chr4:002218379	0.0	W/2218379-2218615,2218953-2219051,2219567-2219713,2219796-2220182,2220280-2220393,2220511-2221113	AT4G04450.1  CDS  gene_syn AtWRKY42, T26N6.6, T26N6_6, WRKY42  gene WRKY42  function member of WRKY Transcription Factor; Group II-b  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY42; transcription factor  note WRKY42; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY31; transcription factor (TAIR:AT4G22070.1); Has 2116 Blast hits to 1830 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 36; Fungi - 2; Plants - 2000; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT4G04450.1p  transcript_id AT4G04450.1  protein_id AT4G04450.1p  transcript_id AT4G04450.1  
At4g04460	chr4:002225232	0.0	W/2225232-2225594,2225698-2225758,2225910-2226004,2226086-2226198,2226282-2226490,2226576-2226640,2226726-2226839,2226918-2226982,2227051-2227198,2227278-2227397,2227487-2227575,2227662-2227746	AT4G04460.1  CDS  gene_syn T26N6.7, T26N6_7  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Saposin-like (InterPro:IPR011001), Peptidase aspartic, catalytic (InterPro:IPR009007), Saposin-like type B, 1 (InterPro:IPR007856), Saposin-like type B, 2 (InterPro:IPR008138), Saposin B (InterPro:IPR008139), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT1G11910.1); Has 5361 Blast hits to 3775 proteins in 342 species: Archae - 0; Bacteria - 6; Metazoa - 3109; Fungi - 1191; Plants - 343; Viruses - 0; Other Eukaryotes - 712 (source: NCBI BLink).  protein_id AT4G04460.1p  transcript_id AT4G04460.1  protein_id AT4G04460.1p  transcript_id AT4G04460.1  
At4g04470	chr4:002229149	0.0	C/2229149-2229226,2228826-2228924,2228623-2228724,2228464-2228539,2228306-2228376,2228122-2228207,2227963-2228023	AT4G04470.1  CDS  gene_syn 22-KD PEROXISOMAL MEMBRANE PROTEIN, PMP22, T26N6.9, T26N6_9  gene PMP22  function 22-kD peroxisomal membrane protein, an integral membrane protein embedded in the lipid bilayer.  go_component peroxisomal membrane|GO:0005778|10318708|IDA  go_process biological_process|GO:0008150||ND  product PMP22  note PMP22; INVOLVED IN: biological_process unknown; LOCATED IN: peroxisomal membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mpv17/PMP22 (InterPro:IPR007248); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14305.1); Has 815 Blast hits to 815 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 393; Fungi - 233; Plants - 141; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT4G04470.1p  transcript_id AT4G04470.1  protein_id AT4G04470.1p  transcript_id AT4G04470.1  
At4g04480	chr4:002229649	0.0	W/2229649-2230845	AT4G04480.1  CDS  gene_syn T26N6.8, T26N6_8  go_component chloroplast|GO:0009507||IEA  product unknown protein  note LOCATED IN: chloroplast; EXPRESSED IN: flower, pollen tube; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G22030.1); Has 51 Blast hits to 51 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G04480.1p  transcript_id AT4G04480.1  protein_id AT4G04480.1p  transcript_id AT4G04480.1  
At4g04490	chr4:002233819	0.0	C/2233819-2234638,2233632-2233757,2233428-2233549,2233140-2233350,2232832-2233069,2232620-2232758,2231957-2232277	AT4G04490.1  CDS  gene_syn T26N6.10, T26N6_10  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G04540.1); Has 89637 Blast hits to 88561 proteins in 3231 species: Archae - 49; Bacteria - 7931; Metazoa - 39202; Fungi - 7048; Plants - 19589; Viruses - 416; Other Eukaryotes - 15402 (source: NCBI BLink).  protein_id AT4G04490.1p  transcript_id AT4G04490.1  protein_id AT4G04490.1p  transcript_id AT4G04490.1  
At4g04495	chr4:002236004	0.0	C/2236004-2237046	AT4G04495.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 8.9e-24 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g04500	chr4:002238411	0.0	W/2238411-2239368,2239460-2239584,2239669-2239879,2239971-2240208,2240282-2240438,2240516-2240767	AT4G04500.1  CDS  gene_syn T26N6.11, T26N6_11  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G04540.1); Has 90216 Blast hits to 89070 proteins in 3285 species: Archae - 53; Bacteria - 7910; Metazoa - 39418; Fungi - 7173; Plants - 19735; Viruses - 418; Other Eukaryotes - 15509 (source: NCBI BLink).  protein_id AT4G04500.1p  transcript_id AT4G04500.1  protein_id AT4G04500.1p  transcript_id AT4G04500.1  
At4g04510	chr4:002242122	0.0	W/2242122-2242953,2243048-2243155,2243233-2243357,2243437-2243647,2243784-2244021,2244135-2244276,2244366-2244656	AT4G04510.1  CDS  gene_syn F4H6.1  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: stamen, trichome; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G04540.1); Has 89665 Blast hits to 88597 proteins in 3209 species: Archae - 47; Bacteria - 7885; Metazoa - 39103; Fungi - 7154; Plants - 19733; Viruses - 423; Other Eukaryotes - 15320 (source: NCBI BLink).  protein_id AT4G04510.1p  transcript_id AT4G04510.1  protein_id AT4G04510.1p  transcript_id AT4G04510.1  
At4g04520	chr4:002246161	0.0	W/2246161-2249105	AT4G04520.1  mRNA_TE_gene  pseudo  gene_syn F4H6.2  note Transposable element gene, Mutator-like transposase family, has a 1.1e-26 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At4g04525	chr4:002250849	0.0	C/2250849-2251449	AT4G04525.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42810.1)  
At4g04530	chr4:002252065	0.0	C/2252065-2256557	AT4G04530.1  mRNA_TE_gene  pseudo  gene_syn F4H6.3  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G05280.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At4g04540	chr4:002259580	0.0	W/2259580-2260426,2260510-2260635,2260716-2260849,2260936-2261146,2261226-2261463,2261549-2261687,2261854-2262138	AT4G04540.1  CDS  gene_syn F4H6.4  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G04570.1); Has 90980 Blast hits to 89817 proteins in 3291 species: Archae - 51; Bacteria - 8100; Metazoa - 39697; Fungi - 7326; Plants - 19732; Viruses - 411; Other Eukaryotes - 15663 (source: NCBI BLink).  protein_id AT4G04540.1p  transcript_id AT4G04540.1  protein_id AT4G04540.1p  transcript_id AT4G04540.1  
At4g04545	chr4:002270611	0.0	W/2270611-2274896	AT4G04545.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G09170.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G34610.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At4g04547	chr4:002275920	0.0	C/2275920-2277953	AT4G04547.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 1.9e-68 P-value blast match to Q9SJR8 /172-333 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g04550	chr4:002281319	0.0	C/2281319-2282656	AT4G04550.1  mRNA_TE_gene  pseudo  gene_syn F4H6.7, F4H6_7  note Transposable element gene, copia-like retrotransposon family, has a 1.9e-10 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At4g04560	chr4:002283665	0.0	C/2283665-2288386	AT4G04560.1  mRNA_TE_gene  pseudo  gene_syn F4H6.8, F4H6_8  note Transposable element gene, copia-like retrotransposon family, has a 1.0e-94 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At4g04570	chr4:002290045	0.0	W/2290045-2290885,2291048-2291164,2291235-2291368,2291456-2291666,2291746-2291983,2292081-2292219,2292433-2292717	AT4G04570.1  CDS  gene_syn F4H6.9, F4H6_9  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G04540.1); Has 90737 Blast hits to 89542 proteins in 3302 species: Archae - 53; Bacteria - 8131; Metazoa - 39579; Fungi - 7324; Plants - 19668; Viruses - 411; Other Eukaryotes - 15571 (source: NCBI BLink).  protein_id AT4G04570.1p  transcript_id AT4G04570.1  protein_id AT4G04570.1p  transcript_id AT4G04570.1  
At4g04570	chr4:002290045	0.0	W/2290045-2290885,2291048-2291164,2291235-2291368,2291456-2291666,2291746-2291983,2292081-2292255	AT4G04570.2  CDS  gene_syn F4H6.9, F4H6_9  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G04540.1); Has 90505 Blast hits to 89349 proteins in 3301 species: Archae - 53; Bacteria - 8110; Metazoa - 39490; Fungi - 7327; Plants - 19568; Viruses - 411; Other Eukaryotes - 15546 (source: NCBI BLink).  protein_id AT4G04570.2p  transcript_id AT4G04570.2  protein_id AT4G04570.2p  transcript_id AT4G04570.2  
At4g04580	chr4:002294792	0.0	C/2294792-2294906,2294518-2294594,2294383-2294419,2294140-2294233,2293971-2294046,2293761-2293862	AT4G04580.1  CDS  gene_syn F4H6.10, F4H6_10  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT2G38300.1); Has 848 Blast hits to 848 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 843; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G04580.1p  transcript_id AT4G04580.1  protein_id AT4G04580.1p  transcript_id AT4G04580.1  
At4g04590	chr4:002298267	0.0	W/2298267-2300006	AT4G04590.1  mRNA_TE_gene  pseudo  gene_syn F4H6.11, F4H6_11  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 5.3e-36 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At4g04600	chr4:002303199	0.0	W/2303199-2307272	AT4G04600.1  mRNA_TE_gene  pseudo  gene_syn F4H6.12, F4H6_12  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At4g04601	chr4:002309413	0.0	C/2309413-2309571	AT4G04601.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G04601.1p  transcript_id AT4G04601.1  protein_id AT4G04601.1p  transcript_id AT4G04601.1  
At4g04610	chr4:002325069	0.0	W/2325069-2325150,2325308-2325599,2325695-2326718	AT4G04610.1  CDS  gene_syn 3 -PHOSPHOADENOSINE 5 -PHOSPHOSULFATE REDUCTASE, APR, APR1, APS REDUCTASE, APS REDUCTASE 1, ATAPR1, F4H6.13, F4H6_13, PAPS REDUCTASE HOMOLOG 19, PRH19  gene APR1  function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5 -phosphosulfate reductase-like (APRL) group.  go_component chloroplast thylakoid|GO:0009534|19259774|IDA  go_component chloroplast stroma|GO:0009570|19259774|IDA  go_component chloroplast|GO:0009507|8917600|ISS  go_component plastid|GO:0009536|12220264|TAS  go_process sulfate assimilation|GO:0000103|8917600|IGI  go_process sulfate assimilation|GO:0000103|9653199|IDA  go_process response to oxidative stress|GO:0006979|11467967|IDA  go_process sulfate reduction|GO:0019419|8917600|IDA  go_function adenylyl-sulfate reductase activity|GO:0009973|10712537|IDA  go_function adenylyl-sulfate reductase activity|GO:0009973|9653199|IDA  product APR1 (APS REDUCTASE 1); adenylyl-sulfate reductase  note APS REDUCTASE 1 (APR1); FUNCTIONS IN: adenylyl-sulfate reductase activity; INVOLVED IN: sulfate reduction, response to oxidative stress, sulfate assimilation; LOCATED IN: chloroplast, chloroplast stroma, plastid, chloroplast thylakoid; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Thioredoxin-independent 5&apos;-adenylylsulphate reductase (InterPro:IPR004508), Thioredoxin fold (InterPro:IPR012335), Phosphoadenosine phosphosulphate reductase (InterPro:IPR002500), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: APR3 (APS REDUCTASE 3); adenylyl-sulfate reductase (TAIR:AT4G21990.1); Has 4175 Blast hits to 3725 proteins in 1060 species: Archae - 92; Bacteria - 1567; Metazoa - 1147; Fungi - 396; Plants - 387; Viruses - 0; Other Eukaryotes - 586 (source: NCBI BLink).  protein_id AT4G04610.1p  transcript_id AT4G04610.1  protein_id AT4G04610.1p  transcript_id AT4G04610.1  
At4g04614	chr4:002327761	0.0	C/2327761-2327914,2327308-2327684	AT4G04614.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 271 Blast hits to 255 proteins in 67 species: Archae - 0; Bacteria - 2; Metazoa - 80; Fungi - 46; Plants - 31; Viruses - 3; Other Eukaryotes - 109 (source: NCBI BLink).  protein_id AT4G04614.1p  transcript_id AT4G04614.1  protein_id AT4G04614.1p  transcript_id AT4G04614.1  
At4g04620	chr4:002329890	0.0	C/2329890-2329926,2329402-2329457,2329270-2329322,2328865-2328983,2328663-2328766	AT4G04620.1  CDS  gene_syn ATG8B, F4H6.14, F4H6_14, autophagy 8b  gene ATG8B  go_process autophagy|GO:0006914||ISS  go_function microtubule binding|GO:0008017||ISS  product ATG8B (autophagy 8b); microtubule binding  note autophagy 8b (ATG8B); FUNCTIONS IN: microtubule binding; INVOLVED IN: autophagy; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: APG8A (AUTOPHAGY 8A); APG8 activating enzyme/ APG8-specific protease/ Atg8 ligase (TAIR:AT4G21980.2); Has 1162 Blast hits to 1160 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 581; Fungi - 125; Plants - 172; Viruses - 3; Other Eukaryotes - 281 (source: NCBI BLink).  protein_id AT4G04620.1p  transcript_id AT4G04620.1  protein_id AT4G04620.1p  transcript_id AT4G04620.1  
At4g04620	chr4:002329890	0.0	C/2329890-2329926,2329402-2329457,2329270-2329322,2328865-2328983,2328663-2328766	AT4G04620.2  CDS  gene_syn ATG8B, F4H6.14, F4H6_14, autophagy 8b  gene ATG8B  go_process autophagy|GO:0006914||ISS  go_function microtubule binding|GO:0008017||ISS  product ATG8B (autophagy 8b); microtubule binding  note autophagy 8b (ATG8B); FUNCTIONS IN: microtubule binding; INVOLVED IN: autophagy; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: APG8A (AUTOPHAGY 8A); APG8 activating enzyme/ APG8-specific protease/ Atg8 ligase (TAIR:AT4G21980.2); Has 1162 Blast hits to 1160 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 581; Fungi - 125; Plants - 172; Viruses - 3; Other Eukaryotes - 281 (source: NCBI BLink).  protein_id AT4G04620.2p  transcript_id AT4G04620.2  protein_id AT4G04620.2p  transcript_id AT4G04620.2  
At4g04630	chr4:002332163	0.0	C/2332163-2332669	AT4G04630.1  CDS  gene_syn F4H6.15, F4H6_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF584 (InterPro:IPR007608); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21970.1); Has 212 Blast hits to 212 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 212; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G04630.1p  transcript_id AT4G04630.1  protein_id AT4G04630.1p  transcript_id AT4G04630.1  
At4g04632	chr4:002339726	0.0	C/2339726-2340049	AT4G04632.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  product ATP binding / protein kinase  note ATP binding / protein kinase; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase-related (TAIR:AT3G45670.1); Has 2539 Blast hits to 2538 proteins in 196 species: Archae - 0; Bacteria - 40; Metazoa - 991; Fungi - 462; Plants - 549; Viruses - 0; Other Eukaryotes - 497 (source: NCBI BLink).  protein_id AT4G04632.1p  transcript_id AT4G04632.1  protein_id AT4G04632.1p  transcript_id AT4G04632.1  
At4g04635	chr4:002347903	0.0	W/2347903-2349156	AT4G04635.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G43722.1); similar to Zinc transporter, putative [Asparagus officinalis] (GB:ABB55331.1); contains InterPro domain Transposase, IS4; (InterPro:IPR002559)  
At4g04640	chr4:002350761	0.0	C/2350761-2351882	AT4G04640.1  CDS  gene_syn ATPC1, T19J18.4, T19J18_4  gene ATPC1  function One of two genes (with ATPC2) encoding the gamma subunit of Arabidopsis chloroplast ATP synthase.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component chloroplast|GO:0009507|1826905|IDA  go_component chloroplast ATP synthase complex|GO:0009544|1826905|TAS  go_process ATP biosynthetic process|GO:0006754|14576160|IMP  go_process photosynthetic electron transport in photosystem II|GO:0009772|14576160|IMP  go_process ATP synthesis coupled proton transport|GO:0015986|1826905|TAS  go_function enzyme regulator activity|GO:0030234|1826905|TAS  product ATPC1; enzyme regulator  note ATPC1; FUNCTIONS IN: enzyme regulator activity; INVOLVED IN: photosynthetic electron transport in photosystem II, ATP biosynthetic process, ATP synthesis coupled proton transport; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, gamma subunit (InterPro:IPR000131); BEST Arabidopsis thaliana protein match is: ATPC2; enzyme regulator (TAIR:AT1G15700.1); Has 6983 Blast hits to 6977 proteins in 1588 species: Archae - 5; Bacteria - 3178; Metazoa - 207; Fungi - 99; Plants - 112; Viruses - 0; Other Eukaryotes - 3382 (source: NCBI BLink).  protein_id AT4G04640.1p  transcript_id AT4G04640.1  protein_id AT4G04640.1p  transcript_id AT4G04640.1  
At4g04650	chr4:002354339	0.0	C/2354339-2355213,2353989-2354112	AT4G04650.1  CDS  gene_syn T19J18.5, T19J18_5  go_component stromule|GO:0010319|16923014|IDA  go_process response to cold|GO:0009409|16923014|IEP  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cold; LOCATED IN: stromule; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43730.1); Has 608 Blast hits to 598 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 608; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G04650.1p  transcript_id AT4G04650.1  protein_id AT4G04650.1p  transcript_id AT4G04650.1  
At4g04653	chr4:002356733	0.0	C/2356733-2356889	AT4G04653.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G35516  
At4g04655	chr4:002357418	0.0	W/2357418-2364944	AT4G04655.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.0e-19 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)  
At4g04660	chr4:002365562	0.0	W/2365562-2366755	AT4G04660.1  pseudogenic_transcript  pseudo  gene_syn T19J18.3, T19J18_3  note pseudogene, hypothetical protein, similar to zinc finger protein (Arabidopsis thaliana) GI:976277  
At4g04670	chr4:002367603	0.0	W/2367603-2368338,2368551-2368941,2369203-2370282,2370402-2370531,2370730-2370965,2371077-2371212,2371342-2371418,2371673-2371779,2371896-2371990	AT4G04670.1  CDS  gene_syn T19J18.2, T19J18_2  go_component cellular_component|GO:0005575||ND  go_process wybutosine biosynthetic process|GO:0031591|16642040|ISS  product Met-10+ like family protein / kelch repeat-containing protein  note Met-10+ like family protein / kelch repeat-containing protein; INVOLVED IN: wybutosine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Protein of unknown function Met10 (InterPro:IPR003402), Kelch-type beta propeller (InterPro:IPR015915), tRNA wybutosine-synthesizing protein (InterPro:IPR003827); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G18610.1); Has 8151 Blast hits to 4692 proteins in 304 species: Archae - 337; Bacteria - 119; Metazoa - 3836; Fungi - 887; Plants - 1022; Viruses - 20; Other Eukaryotes - 1930 (source: NCBI BLink).  protein_id AT4G04670.1p  transcript_id AT4G04670.1  protein_id AT4G04670.1p  transcript_id AT4G04670.1  
At4g04680	chr4:002372266	0.0	W/2372266-2372461,2372532-2372701,2372794-2372863,2372933-2373044,2373090-2373327	AT4G04680.1  CDS  gene_syn T19J18.1, T19J18_1  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: binding (TAIR:AT5G06350.1); Has 120 Blast hits to 120 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 10; Plants - 18; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G04680.1p  transcript_id AT4G04680.1  protein_id AT4G04680.1p  transcript_id AT4G04680.1  
At4g04690	chr4:002373999	0.0	C/2373999-2375135	AT4G04690.1  CDS  gene_syn T19J18.6, T19J18_6  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product F-box family protein (FBX15)  note F-box family protein (FBX15); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G08750.1); Has 1114 Blast hits to 1101 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1112; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G04690.1p  transcript_id AT4G04690.1  protein_id AT4G04690.1p  transcript_id AT4G04690.1  
At4g04692	chr4:002375602	0.0	C/2375602-2376364	AT4G04692.1  pseudogenic_transcript  pseudo  function pseudogene of unknown protein  note expressed protein  
At4g04692	chr4:002375602	0.0	C/2375602-2376364	AT4G04692.1  pseudogenic_transcript  pseudo  function pseudogene of unknown protein  note expressed protein  
At4g04693	chr4:002379440	0.0	W/2379440-2380744	AT4G04693.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At4g04695	chr4:002383438	0.0	C/2383438-2383996,2382966-2383109,2382727-2382879,2382427-2382539,2382181-2382348,2381968-2382095,2381803-2381902,2381634-2381723	AT4G04695.1  CDS  gene_syn CPK31  gene CPK31  function member of Calcium Dependent Protein Kinase. Involved in response to salicylic acid.  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process response to salicylic acid stimulus|GO:0009751|16307367|IEP  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  go_function kinase activity|GO:0016301||ISS  product CPK31; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note CPK31; FUNCTIONS IN: in 7 functions; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation, response to salicylic acid stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), Tyrosine protein kinase (InterPro:IPR001245), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CPK27; ATP binding / calcium ion binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT4G04700.1); Has 94356 Blast hits to 88099 proteins in 2790 species: Archae - 56; Bacteria - 7228; Metazoa - 41250; Fungi - 12372; Plants - 14078; Viruses - 422; Other Eukaryotes - 18950 (source: NCBI BLink).  protein_id AT4G04695.1p  transcript_id AT4G04695.1  protein_id AT4G04695.1p  transcript_id AT4G04695.1  
At4g04700	chr4:002387428	0.0	C/2387428-2387986,2386733-2386876,2386500-2386652,2386180-2386292,2385838-2386005,2385630-2385757,2385452-2385551,2385276-2385368	AT4G04700.1  CDS  gene_syn CPK27, T4B21.21, T4B21_21  gene CPK27  function member of Calcium Dependent Protein Kinase  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_function kinase activity|GO:0016301||ISS  product CPK27; ATP binding / calcium ion binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note CPK27; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: cytosol; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), Tyrosine protein kinase (InterPro:IPR001245), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CPK31; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT4G04695.1); Has 103052 Blast hits to 96580 proteins in 3427 species: Archae - 70; Bacteria - 8016; Metazoa - 43886; Fungi - 12743; Plants - 18024; Viruses - 458; Other Eukaryotes - 19855 (source: NCBI BLink).  protein_id AT4G04700.1p  transcript_id AT4G04700.1  protein_id AT4G04700.1p  transcript_id AT4G04700.1  
At4g04710	chr4:002392755	0.0	C/2392755-2392887,2392305-2392712,2392026-2392169,2391809-2391982,2391507-2391616,2391267-2391440,2391052-2391179,2390681-2390780,2390515-2390586,2390094-2390171,2389891-2389931,2389598-2389763	AT4G04710.1  CDS  gene_syn CPK22, T4B21.12, T4B21_12  gene CPK22  function member of Calcium Dependent Protein Kinase  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  go_function kinase activity|GO:0016301||ISS  product CPK22; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase  note CPK22; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CPK21; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT4G04720.1); Has 95825 Blast hits to 86101 proteins in 3053 species: Archae - 61; Bacteria - 7088; Metazoa - 40441; Fungi - 12568; Plants - 16067; Viruses - 437; Other Eukaryotes - 19163 (source: NCBI BLink).  protein_id AT4G04710.1p  transcript_id AT4G04710.1  protein_id AT4G04710.1p  transcript_id AT4G04710.1  
At4g04720	chr4:002396929	0.0	C/2396929-2397631,2396331-2396474,2396097-2396249,2395752-2395864,2395426-2395593,2395215-2395342,2394986-2395085,2394817-2394903	AT4G04720.1  CDS  gene_syn CPK21, T4B21.13, T4B21_13  gene CPK21  function member of Calcium Dependent Protein Kinase  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  go_function kinase activity|GO:0016301||ISS  product CPK21; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase  note CPK21; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CPK23; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT4G04740.1); Has 102229 Blast hits to 95905 proteins in 2772 species: Archae - 73; Bacteria - 7979; Metazoa - 43786; Fungi - 12665; Plants - 17447; Viruses - 456; Other Eukaryotes - 19823 (source: NCBI BLink).  protein_id AT4G04720.1p  transcript_id AT4G04720.1  protein_id AT4G04720.1p  transcript_id AT4G04720.1  
At4g04730	chr4:002401927	0.0	C/2401927-2402349	AT4G04730.1  CDS  gene_syn T4B21.14, T4B21_14  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: sperm cell, pedicel; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31590.1); Has 46 Blast hits to 46 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G04730.1p  transcript_id AT4G04730.1  protein_id AT4G04730.1p  transcript_id AT4G04730.1  
At4g04740	chr4:002407824	0.0	C/2407824-2408493,2406788-2406931,2406550-2406702,2406350-2406462,2406018-2406185,2405802-2405929,2405578-2405677,2405406-2405492	AT4G04740.1  CDS  gene_syn ATCPK23, CPK23, T4B21.15, T4B21_15  gene CPK23  function member of Calcium Dependent Protein Kinase  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  go_function kinase activity|GO:0016301||ISS  product CPK23; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase  note CPK23; FUNCTIONS IN: in 6 functions; INVOLVED IN: response to cadmium ion, protein amino acid phosphorylation, N-terminal protein myristoylation; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CPK21; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT4G04720.1); Has 95405 Blast hits to 90817 proteins in 2719 species: Archae - 72; Bacteria - 7786; Metazoa - 39686; Fungi - 12003; Plants - 16549; Viruses - 408; Other Eukaryotes - 18901 (source: NCBI BLink).  protein_id AT4G04740.1p  transcript_id AT4G04740.1  protein_id AT4G04740.1p  transcript_id AT4G04740.1  
At4g04745	chr4:002412863	0.0	C/2412863-2413303	AT4G04745.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21902.1); Has 12 Blast hits to 12 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G04745.1p  transcript_id AT4G04745.1  protein_id AT4G04745.1p  transcript_id AT4G04745.1  
At4g04750	chr4:002418110	0.0	W/2418110-2418268,2418386-2418448,2418570-2418659,2418760-2418819,2418945-2419010,2419612-2419677,2419762-2419837,2419955-2420019,2420722-2420814,2420905-2420991,2421086-2421170,2421246-2421289,2421372-2421434,2421551-2421610,2421698-2421751,2421856-2421915,2421993-2422107,2422482-2422624	AT4G04750.1  CDS  gene_syn T4B21.10, T4B21_10  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product carbohydrate transmembrane transporter/ sugar:hydrogen symporter  note carbohydrate transmembrane transporter/ sugar:hydrogen symporter; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter family protein (TAIR:AT4G04760.1); Has 22465 Blast hits to 22019 proteins in 1341 species: Archae - 343; Bacteria - 9891; Metazoa - 4916; Fungi - 4531; Plants - 1551; Viruses - 0; Other Eukaryotes - 1233 (source: NCBI BLink).  protein_id AT4G04750.1p  transcript_id AT4G04750.1  protein_id AT4G04750.1p  transcript_id AT4G04750.1  
At4g04760	chr4:002424164	0.0	W/2424164-2424307,2424392-2424458,2424552-2424613,2424760-2424819,2424945-2425010,2425214-2425279,2425357-2425432,2425532-2425596,2425682-2425774,2426051-2426140,2426238-2426322,2426421-2426464,2426560-2426608,2426720-2426784,2426873-2426926,2427106-2427165,2427408-2427522,2427627-2427769	AT4G04760.1  CDS  gene_syn T4B21.9, T4B21_9  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product sugar transporter family protein  note sugar transporter family protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: carbohydrate transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT4G04750.1); Has 14978 Blast hits to 14645 proteins in 1001 species: Archae - 194; Bacteria - 4959; Metazoa - 3624; Fungi - 4004; Plants - 1464; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink).  protein_id AT4G04760.1p  transcript_id AT4G04760.1  protein_id AT4G04760.1p  transcript_id AT4G04760.1  
At4g04770	chr4:002428331	0.0	C/2428331-2429785,2427998-2428216	AT4G04770.1  CDS  gene_syn ARABIDOPSIS THALIANA NUCLEOSOME ASSEMBLY PROTEIN 1, ATABC1, ATNAP1, ATP BINDING CASSETTE PROTEIN 1, LAF6, LONG AFTER FR, T4B21.16, T4B21_16  gene ATABC1  function Encodes an iron-stimulated ATPase. A member of the NAP subfamily of ABC transporters. Involved in Fe-S cluster assembly. Similar to SufB. Involved in the regulation of iron homeostasis. Able to form homodimers. Interacts with AtNAP7 inside the chloroplast.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|11156608|IDA  go_component chloroplast|GO:0009507|15611066|IDA  go_process cellular iron ion homeostasis|GO:0006879|15611066|IDA  go_process cellular iron ion homeostasis|GO:0006879|15611066|TAS  go_process response to red or far red light|GO:0009639|11156608|IMP  go_process iron-sulfur cluster assembly|GO:0016226|15611066|IGI  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  go_function protein binding|GO:0005515|15611066|IPI  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|11156608|ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|15611066|IDA  product ATABC1 (ATP BINDING CASSETTE PROTEIN 1); ATPase, coupled to transmembrane movement of substances / protein binding / transporter  note ATP BINDING CASSETTE PROTEIN 1 (ATABC1); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, protein binding, transporter activity; INVOLVED IN: response to red or far red light, cellular iron ion homeostasis, iron-sulfur cluster assembly; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SUF system FeS cluster assembly, SufB (InterPro:IPR010231), SUF system FeS cluster assembly, SufBD (InterPro:IPR000825); BEST Arabidopsis thaliana protein match is: ATP-binding-cassette transporter, putative (TAIR:AT5G44316.1); Has 8481 Blast hits to 8453 proteins in 999 species: Archae - 193; Bacteria - 3203; Metazoa - 4; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 5029 (source: NCBI BLink).  protein_id AT4G04770.1p  transcript_id AT4G04770.1  protein_id AT4G04770.1p  transcript_id AT4G04770.1  
At4g04780	chr4:002431120	0.0	W/2431120-2431284,2431355-2431668,2432136-2432362,2432645-2432955,2433040-2433091,2433321-2433397	AT4G04780.1  CDS  gene_syn MED21, MEDIATOR 21, T4B21.8, T4B21_8  gene MED21  function Encodes the med21 subunit of the mediator complex which is involved in transcriptional regulation. MED21 interacts physically with the E3 ligase HUB1 and this interaction may be important in mediation defense responses to fungal pathogens.  go_component mediator complex|GO:0000119|19286969|TAS  go_process defense response to fungus, incompatible interaction|GO:0009817|19286969|IMP  go_process regulation of transcription|GO:0045449|19286969|TAS  product MED21 (MEDIATOR 21)  note MEDIATOR 21 (MED21); INVOLVED IN: defense response to fungus, incompatible interaction, regulation of transcription; LOCATED IN: mediator complex; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G15690.1); Has 161 Blast hits to 161 proteins in 49 species: Archae - 0; Bacteria - 2; Metazoa - 89; Fungi - 4; Plants - 60; Viruses - 4; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G04780.1p  transcript_id AT4G04780.1  protein_id AT4G04780.1p  transcript_id AT4G04780.1  
At4g04780	chr4:002431120	0.0	W/2431120-2431284,2431355-2431668,2432136-2432362,2432645-2432955,2433040-2433091,2433326-2433366	AT4G04780.2  CDS  gene_syn MED21, MEDIATOR 21, T4B21.8, T4B21_8  gene MED21  function Encodes the med21 subunit of the mediator complex which is involved in transcriptional regulation. MED21 interacts physically with the E3 ligase HUB1 and this interaction may be important in mediation defense responses to fungal pathogens.  go_component mediator complex|GO:0000119|19286969|TAS  go_process defense response to fungus, incompatible interaction|GO:0009817|19286969|IMP  go_process regulation of transcription|GO:0045449|19286969|TAS  product MED21 (MEDIATOR 21)  note MEDIATOR 21 (MED21); INVOLVED IN: defense response to fungus, incompatible interaction, regulation of transcription; LOCATED IN: mediator complex; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G15690.1); Has 134 Blast hits to 134 proteins in 38 species: Archae - 0; Bacteria - 2; Metazoa - 66; Fungi - 0; Plants - 60; Viruses - 4; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G04780.2p  transcript_id AT4G04780.2  protein_id AT4G04780.2p  transcript_id AT4G04780.2  
At4g04790	chr4:002439188	0.0	C/2439188-2439344,2439006-2439053,2438329-2438934,2438060-2438239,2437907-2437971,2437690-2437797,2437494-2437607,2437300-2437395,2437080-2437178,2436839-2436958,2436586-2436690,2436327-2436491,2436117-2436244,2435950-2436028,2435446-2435663,2435007-2435184	AT4G04790.1  CDS  gene_syn T4B21.17, T4B21_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21880.1); Has 8701 Blast hits to 4047 proteins in 142 species: Archae - 4; Bacteria - 18; Metazoa - 161; Fungi - 114; Plants - 8118; Viruses - 0; Other Eukaryotes - 286 (source: NCBI BLink).  protein_id AT4G04790.1p  transcript_id AT4G04790.1  protein_id AT4G04790.1p  transcript_id AT4G04790.1  
At4g04800	chr4:002439574	0.0	W/2439574-2439788,2440517-2440673,2440779-2440937	AT4G04800.1  CDS  gene_syn T4B21.6, T4B21_6  go_component nucleus|GO:0005634|14617066|IDA  go_function peptide-methionine-(S)-S-oxide reductase activity|GO:0008113||IEA  go_process biological_process|GO:0008150||ND  product methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein  note methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein; FUNCTIONS IN: peptide-methionine-(S)-S-oxide reductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Methionine sulphoxide reductase B (InterPro:IPR002579), Mss4-like (InterPro:IPR011057); BEST Arabidopsis thaliana protein match is: MSRB2 (methionine sulfoxide reductase B 2); peptide-methionine-(S)-S-oxide reductase (TAIR:AT4G21860.1); Has 5894 Blast hits to 5893 proteins in 1231 species: Archae - 53; Bacteria - 2689; Metazoa - 222; Fungi - 85; Plants - 108; Viruses - 1; Other Eukaryotes - 2736 (source: NCBI BLink).  protein_id AT4G04800.1p  transcript_id AT4G04800.1  protein_id AT4G04800.1p  transcript_id AT4G04800.1  
At4g04810	chr4:002441412	0.0	W/2441412-2441509,2442147-2442303,2442403-2442567	AT4G04810.1  CDS  gene_syn T4B21.22, T4B21_22  go_function peptide-methionine-(S)-S-oxide reductase activity|GO:0008113||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein  note methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein; FUNCTIONS IN: peptide-methionine-(S)-S-oxide reductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Methionine sulphoxide reductase B (InterPro:IPR002579), Mss4-like (InterPro:IPR011057); BEST Arabidopsis thaliana protein match is: methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein (TAIR:AT4G04830.1); Has 5854 Blast hits to 5853 proteins in 1229 species: Archae - 51; Bacteria - 2684; Metazoa - 217; Fungi - 85; Plants - 108; Viruses - 1; Other Eukaryotes - 2708 (source: NCBI BLink).  protein_id AT4G04810.1p  transcript_id AT4G04810.1  protein_id AT4G04810.1p  transcript_id AT4G04810.1  
At4g04820	chr4:002443692	0.0	C/2443692-2444510	AT4G04820.1  mRNA_TE_gene  pseudo  gene_syn T4B21.18, T4B21_18  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G24930.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD65034.1)  
At4g04830	chr4:002445902	0.0	W/2445902-2445999,2446452-2446608,2446708-2446872	AT4G04830.1  CDS  gene_syn T4B21.5, T4B21_5  go_function peptide-methionine-(S)-S-oxide reductase activity|GO:0008113||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein  note methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein; FUNCTIONS IN: peptide-methionine-(S)-S-oxide reductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Methionine sulphoxide reductase B (InterPro:IPR002579), Mss4-like (InterPro:IPR011057); BEST Arabidopsis thaliana protein match is: methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein (TAIR:AT4G04810.1); Has 5914 Blast hits to 5905 proteins in 1230 species: Archae - 53; Bacteria - 2684; Metazoa - 224; Fungi - 85; Plants - 108; Viruses - 1; Other Eukaryotes - 2759 (source: NCBI BLink).  protein_id AT4G04830.1p  transcript_id AT4G04830.1  protein_id AT4G04830.1p  transcript_id AT4G04830.1  
At4g04840	chr4:002449659	0.0	W/2449659-2449669,2449748-2449882,2450004-2450160,2451144-2451302	AT4G04840.1  CDS  gene_syn T4B21.4, T4B21_4  go_function peptide-methionine-(S)-S-oxide reductase activity|GO:0008113||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein  note methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein; FUNCTIONS IN: peptide-methionine-(S)-S-oxide reductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Methionine sulphoxide reductase B (InterPro:IPR002579), Mss4-like (InterPro:IPR011057); BEST Arabidopsis thaliana protein match is: methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein (TAIR:AT4G21850.1); Has 5829 Blast hits to 5828 proteins in 1230 species: Archae - 51; Bacteria - 2687; Metazoa - 222; Fungi - 85; Plants - 107; Viruses - 1; Other Eukaryotes - 2676 (source: NCBI BLink).  protein_id AT4G04840.1p  transcript_id AT4G04840.1  protein_id AT4G04840.1p  transcript_id AT4G04840.1  
At4g04850	chr4:002453174	0.0	W/2453174-2453224,2453346-2453681,2453768-2453869,2453955-2454035,2454265-2454366,2454561-2454638,2454750-2454818,2455009-2455059,2455188-2455301,2455431-2455532,2455614-2455748,2455847-2456028,2456138-2456273,2456355-2456426,2456500-2456595,2456685-2456891	AT4G04850.1  CDS  gene_syn ATKEA3, KEA3, T4B21.3, T4B21_3  gene KEA3  function member of Putative potassium transporter family  go_component chloroplast|GO:0009507|18431481|IDA  go_process cation transport|GO:0006812||IEA  go_process potassium ion transport|GO:0006813||IEA  go_process metabolic process|GO:0008152||IEA  go_function potassium ion transmembrane transporter activity|GO:0015079||ISS  go_function potassium:hydrogen antiporter activity|GO:0015386|11500563|NAS  go_function potassium:hydrogen antiporter activity|GO:0015386||ISS  product KEA3; potassium ion transmembrane transporter/ potassium:hydrogen antiporter  note KEA3; FUNCTIONS IN: potassium:hydrogen antiporter activity, potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport, cation transport, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153), NAD(P)-binding (InterPro:IPR016040), Regulator of K+ conductance, N-terminal (InterPro:IPR003148); BEST Arabidopsis thaliana protein match is: KEA2; potassium ion transmembrane transporter/ potassium:hydrogen antiporter (TAIR:AT4G00630.1); Has 5220 Blast hits to 5217 proteins in 1144 species: Archae - 173; Bacteria - 3965; Metazoa - 45; Fungi - 40; Plants - 166; Viruses - 0; Other Eukaryotes - 831 (source: NCBI BLink).  protein_id AT4G04850.1p  transcript_id AT4G04850.1  protein_id AT4G04850.1p  transcript_id AT4G04850.1  
At4g04860	chr4:002460135	0.0	W/2460135-2460233,2460328-2460427,2460599-2460813,2460886-2460969,2461049-2461102,2461196-2461378	AT4G04860.1  CDS  gene_syn DER2.2, DERLIN-2.2, T4B21.2, T4B21_2  gene DER2.2  go_component cellular_component|GO:0005575||ND  go_process proteolysis|GO:0006508||ISS  product DER2.2 (DERLIN-2.2)  note DERLIN-2.2 (DER2.2); INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Der1-like (InterPro:IPR007599); BEST Arabidopsis thaliana protein match is: DER2.1 (DERLIN-2.1) (TAIR:AT4G21810.1); Has 634 Blast hits to 633 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 294; Fungi - 119; Plants - 84; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).  protein_id AT4G04860.1p  transcript_id AT4G04860.1  protein_id AT4G04860.1p  transcript_id AT4G04860.1  
At4g04870	chr4:002463523	0.0	C/2463523-2464004,2463373-2463439,2463215-2463289,2463000-2463051,2462513-2462598,2462299-2462373,2462116-2462210,2461904-2461997	AT4G04870.1  CDS  gene_syn CARDIOLIPIN SYNTHASE, CLS, T4B21.19, T4B21_19  gene CLS  function Encodes a protein with cardiolipin synthase activity that is localized to the mitochondiria.  go_process phospholipid biosynthetic process|GO:0008654||IEA  go_component mitochondrion|GO:0005739|15527784|IDA  go_process phospholipid biosynthetic process|GO:0008654||ISS  go_function cardiolipin synthase activity|GO:0008808|15811335|IDA  go_function phosphatidyltransferase activity|GO:0030572||ISS  product CLS (CARDIOLIPIN SYNTHASE); cardiolipin synthase/ phosphatidyltransferase  note CARDIOLIPIN SYNTHASE (CLS); FUNCTIONS IN: phosphatidyltransferase activity, cardiolipin synthase activity; INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CDP-alcohol phosphatidyltransferase (InterPro:IPR000462); BEST Arabidopsis thaliana protein match is: PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1); CDP-alcohol phosphatidyltransferase/ CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase (TAIR:AT2G39290.1); Has 5036 Blast hits to 5036 proteins in 1257 species: Archae - 0; Bacteria - 2666; Metazoa - 108; Fungi - 74; Plants - 52; Viruses - 0; Other Eukaryotes - 2136 (source: NCBI BLink).  protein_id AT4G04870.1p  transcript_id AT4G04870.1  protein_id AT4G04870.1p  transcript_id AT4G04870.1  
At4g04880	chr4:002467027	0.0	C/2467027-2467103,2466802-2466872,2466594-2466685,2466453-2466512,2466170-2466382,2466006-2466082,2465858-2465927,2465656-2465769,2465509-2465575,2465307-2465411,2465055-2465176	AT4G04880.1  CDS  gene_syn T4B21.20, T4B21_20  go_process purine ribonucleoside monophosphate biosynthetic process|GO:0009168||IEA  go_function deaminase activity|GO:0019239||IEA  go_component cellular_component|GO:0005575||ND  go_process purine ribonucleoside monophosphate biosynthetic process|GO:0009168||ISS  go_function deaminase activity|GO:0019239||ISS  product adenosine/AMP deaminase family protein  note adenosine/AMP deaminase family protein; FUNCTIONS IN: deaminase activity; INVOLVED IN: purine ribonucleoside monophosphate biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adenosine/AMP deaminase (InterPro:IPR001365); Has 2670 Blast hits to 2663 proteins in 758 species: Archae - 6; Bacteria - 1487; Metazoa - 309; Fungi - 108; Plants - 24; Viruses - 0; Other Eukaryotes - 736 (source: NCBI BLink).  protein_id AT4G04880.1p  transcript_id AT4G04880.1  protein_id AT4G04880.1p  transcript_id AT4G04880.1  
At4g04885	chr4:002472083	0.0	W/2472083-2472415,2472578-2472679,2472769-2473008,2473465-2474655,2474737-2475252,2475373-2475417	AT4G04885.1  CDS  gene_syn PCF11P-SIMILAR PROTEIN 4, PCFS4  gene PCFS4  function Encodes PCFS4 (Pcf11p-similar protein 4), a homolog of yeast polyadenylation factor Protein 1 of Cleavage Factor (Pcf11p). Regulates FCA (AT4G16280) mRNA polyadenylation. Promotes flowering time.  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634|18298670|IDA  go_component cytoplasm|GO:0005737|18298670|IDA  go_process mRNA polyadenylation|GO:0006378|18298670|IMP  go_process positive regulation of flower development|GO:0009911|18298670|IMP  product PCFS4 (PCF11P-SIMILAR PROTEIN 4); zinc ion binding  note PCF11P-SIMILAR PROTEIN 4 (PCFS4); FUNCTIONS IN: zinc ion binding; INVOLVED IN: positive regulation of flower development, mRNA polyadenylation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 7 plant structures; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), Regulation of nuclear pre-mRNA protein (InterPro:IPR006569), Zinc finger, C2H2-type (InterPro:IPR007087), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: S-locus protein-related (TAIR:AT5G43620.1); Has 461 Blast hits to 281 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 173; Fungi - 188; Plants - 69; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT4G04885.1p  transcript_id AT4G04885.1  protein_id AT4G04885.1p  transcript_id AT4G04885.1  
At4g04890	chr4:002479855	0.0	C/2479855-2480090,2479643-2479760,2479334-2479522,2478816-2479256,2478628-2478729,2478330-2478533,2478064-2478235,2477681-2477952,2477458-2477553,2476970-2477371	AT4G04890.1  CDS  gene_syn PDF2, PROTODERMAL FACTOR 2, T1J1.3, T1J1_3  gene PDF2  function Encodes a homeodomain protein that is expressed in the LI layer of the vegetative, floral and inflorescence meristems. Binds to the L1 box promoter element which is required in some proteins for L1 specific expression.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process epidermal cell differentiation|GO:0009913|12505995|IMP  go_process cotyledon development|GO:0048825|16778018|IGI  go_function DNA binding|GO:0003677|12505995|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product PDF2 (PROTODERMAL FACTOR 2); DNA binding / transcription factor  note PROTODERMAL FACTOR 2 (PDF2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: epidermal cell differentiation, cotyledon development, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ATML1 (MERISTEM LAYER 1); DNA binding / sequence-specific DNA binding / transcription factor (TAIR:AT4G21750.2); Has 8578 Blast hits to 8487 proteins in 444 species: Archae - 0; Bacteria - 0; Metazoa - 6710; Fungi - 196; Plants - 1538; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).  protein_id AT4G04890.1p  transcript_id AT4G04890.1  protein_id AT4G04890.1p  transcript_id AT4G04890.1  
At4g04900	chr4:002487722	0.0	C/2487722-2487779,2487168-2487271,2486946-2487048,2486218-2486423	AT4G04900.1  CDS  gene_syn RIC10, ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10, T1J1.7, T1J1_7  gene RIC10  function encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Most similar to RIC9 and RIC11 (subfamily group I). Gene is expressed predominantly in roots, leaves, and seedlings.  go_component cytoplasm|GO:0005737|11752391|IDA  go_process pollen tube growth|GO:0009860|11752391|IMP  go_function molecular_function|GO:0003674||ND  product RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10)  note ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10 (RIC10); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen tube growth; LOCATED IN: cytoplasm; EXPRESSED IN: seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21745.1); Has 649 Blast hits to 184 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 102; Fungi - 23; Plants - 92; Viruses - 0; Other Eukaryotes - 432 (source: NCBI BLink).  protein_id AT4G04900.1p  transcript_id AT4G04900.1  protein_id AT4G04900.1p  transcript_id AT4G04900.1  
At4g04910	chr4:002495491	0.0	C/2495491-2495666,2495090-2495185,2494928-2495009,2494790-2494840,2493831-2494001,2493497-2493651,2493304-2493412,2492848-2492947,2492706-2492761,2492420-2492485,2492265-2492347,2491930-2492063,2491502-2491712,2491090-2491221,2490944-2491004,2490800-2490859,2490662-2490720,2490468-2490555,2490232-2490354,2489944-2490009,2489696-2489845	AT4G04910.1  CDS  gene_syn N-ethylmaleimide sensitive factor, NSF, T1J1.4, T1J1_4  gene NSF  function N-ethylmaleimide sensitive factor  go_component vacuole|GO:0005773|15539469|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function binding|GO:0005488||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  product NSF (N-ethylmaleimide sensitive factor); ATP binding / binding / nucleoside-triphosphatase/ nucleotide binding  note N-ethylmaleimide sensitive factor (NSF); FUNCTIONS IN: nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; LOCATED IN: vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338); BEST Arabidopsis thaliana protein match is: CDC48 (CELL DIVISION CYCLE 48); ATPase/ identical protein binding (TAIR:AT3G09840.1); Has 21094 Blast hits to 19024 proteins in 1746 species: Archae - 897; Bacteria - 6043; Metazoa - 4098; Fungi - 2392; Plants - 1540; Viruses - 18; Other Eukaryotes - 6106 (source: NCBI BLink).  protein_id AT4G04910.1p  transcript_id AT4G04910.1  protein_id AT4G04910.1p  transcript_id AT4G04910.1  
At4g04920	chr4:002497931	0.0	W/2497931-2498268,2498346-2498414,2498505-2498593,2498677-2498789,2498901-2499002,2499447-2499537,2499725-2500321,2500530-2501148,2501243-2501322,2501646-2501728,2502168-2502404,2502757-2502928,2503247-2503791,2504043-2504219,2504360-2504737,2504850-2504996	AT4G04920.1  CDS  gene_syn SENSITIVE TO FREEZING 6, SFR6, T1J1.2, T1J1_2  gene SFR6  function Encodes a nuclear targeted protein that plays a role in the CBF pathway -downstream of CBF translation. Mutants have impaired cold responses, reduced levels of cold induced RNA transcripts, are sensitive to osmotic stress.  go_component nucleus|GO:0005634|19067974|IDA  go_process response to osmotic stress|GO:0006970|12753580|IMP  go_process cold acclimation|GO:0009631||IMP  go_process circadian regulation of gene expression|GO:0032922|18614706|IMP  go_process regulation of long-day photoperiodism, flowering|GO:0048586|18614706|IMP  go_function molecular_function|GO:0003674||ND  product SFR6 (SENSITIVE TO FREEZING 6)  note SENSITIVE TO FREEZING 6 (SFR6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cold acclimation, circadian regulation of gene expression, regulation of long-day photoperiodism, flowering, response to osmotic stress; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; Has 144 Blast hits to 60 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 8; Fungi - 8; Plants - 16; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT4G04920.1p  transcript_id AT4G04920.1  protein_id AT4G04920.1p  transcript_id AT4G04920.1  
At4g04925	chr4:002506242	0.0	W/2506242-2506472	AT4G04925.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G04925.1p  transcript_id AT4G04925.1  protein_id AT4G04925.1p  transcript_id AT4G04925.1  
At4g04930	chr4:002509236	0.0	W/2509236-2509415,2510100-2510918	AT4G04930.1  CDS  gene_syn DES-1-LIKE, DES-1-LIKE TRANSMEMBRANE PROTEIN, T1J1.1, T1J1_1  gene DES-1-LIKE  function Encodes a sphingolipid delta4-desaturase, involved in sphingolipid biosynthesis. Specifically expressed in floral tissues. Knockout mutants were devoid of sphinga-4,8-dienine in floral tissues.  go_component integral to membrane|GO:0016021||IEA  go_process sphingolipid biosynthetic process|GO:0030148|18978071|IMP  go_function oxidoreductase activity|GO:0016491||ISS  go_function sphingolipid delta-4 desaturase activity|GO:0042284|18978071|IGI  go_function sphingolipid delta-4 desaturase activity|GO:0042284|18978071|IMP  product DES-1-LIKE; oxidoreductase/ sphingolipid delta-4 desaturase  note DES-1-LIKE; FUNCTIONS IN: oxidoreductase activity, sphingolipid delta-4 desaturase activity; INVOLVED IN: sphingolipid biosynthetic process; LOCATED IN: integral to membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sphingolipid delta4-desaturase, N-terminal (InterPro:IPR013866), Fatty acid desaturase, type 1 (InterPro:IPR005804), Sphingolipid delta4-desaturase (InterPro:IPR011388); Has 548 Blast hits to 544 proteins in 178 species: Archae - 0; Bacteria - 122; Metazoa - 206; Fungi - 76; Plants - 18; Viruses - 2; Other Eukaryotes - 124 (source: NCBI BLink).  protein_id AT4G04930.1p  transcript_id AT4G04930.1  protein_id AT4G04930.1p  transcript_id AT4G04930.1  
At4g04940	chr4:002516927	0.0	C/2516927-2517052,2516817-2516844,2516582-2516682,2516285-2516488,2515933-2516176,2515375-2515550,2515207-2515289,2514857-2514929,2514319-2514384,2514082-2514124,2513581-2513720,2513089-2513301,2512883-2512967,2512461-2512755,2512100-2512364,2511780-2512005,2511472-2511686,2511212-2511361	AT4G04940.1  CDS  gene_syn T1J1.5, T1J1_5  go_process rRNA processing|GO:0006364||IEA  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: rRNA processing; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Small-subunit processome, Utp21 (InterPro:IPR007319), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein / katanin p80 subunit, putative (TAIR:AT1G61210.1); Has 35370 Blast hits to 15400 proteins in 505 species: Archae - 46; Bacteria - 5806; Metazoa - 15529; Fungi - 6385; Plants - 2502; Viruses - 0; Other Eukaryotes - 5102 (source: NCBI BLink).  protein_id AT4G04940.1p  transcript_id AT4G04940.1  protein_id AT4G04940.1p  transcript_id AT4G04940.1  
At4g04950	chr4:002519754	0.0	C/2519754-2519924,2519597-2519671,2517882-2519102	AT4G04950.1  CDS  gene_syn T1J1.6, T1J1_6  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  product thioredoxin family protein  note thioredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336), Glutaredoxin-related protein (InterPro:IPR004480); BEST Arabidopsis thaliana protein match is: thioredoxin family protein (TAIR:AT4G32580.1); Has 18917 Blast hits to 11679 proteins in 1583 species: Archae - 133; Bacteria - 8213; Metazoa - 1380; Fungi - 961; Plants - 1034; Viruses - 3; Other Eukaryotes - 7193 (source: NCBI BLink).  protein_id AT4G04950.1p  transcript_id AT4G04950.1  protein_id AT4G04950.1p  transcript_id AT4G04950.1  
At4g04953	chr4:002521330	0.0	C/2521330-2521530	AT4G04953.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G04953.1p  transcript_id AT4G04953.1  protein_id AT4G04953.1p  transcript_id AT4G04953.1  
At4g04955	chr4:002525164	0.0	C/2525164-2525259,2524972-2525062,2524600-2524723,2524448-2524521,2524258-2524334,2524151-2524187,2523974-2524059,2523833-2523892,2523594-2523733,2523379-2523505,2523140-2523295,2522957-2523067,2522771-2522881,2522534-2522632,2522301-2522432	AT4G04955.1  CDS  gene_syn ATALN, Arabidopsis allantoinase  gene ATALN  function Encodes an allantoinase which is involved in allantoin degradation and assimilation. Gene expression was induced when allantoin was added to the medium. The insertion mutant, ataln m2-1, did not grow well on the MS medium where allantoin, instead of ammonium nitrate, was supplied.  go_component endoplasmic reticulum|GO:0005783|18065556|IDA  go_process cellular response to nitrogen starvation|GO:0006995|18065556|IEP  go_process ureide catabolic process|GO:0010136|14976234|IMP  go_function allantoinase activity|GO:0004038|14976234|IGI  go_function allantoinase activity|GO:0004038|14976234|IMP  go_function hydrolase activity|GO:0016787||ISS  product ATALN (Arabidopsis allantoinase); allantoinase/ hydrolase  note Arabidopsis allantoinase (ATALN); FUNCTIONS IN: hydrolase activity, allantoinase activity; INVOLVED IN: cellular response to nitrogen starvation, ureide catabolic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Amidohydrolase 1 (InterPro:IPR006680), Allantoinase (InterPro:IPR017593), Metal-dependent hydrolase, composite (InterPro:IPR011059); BEST Arabidopsis thaliana protein match is: dihydropyrimidinase / DHPase / dihydropyrimidine amidohydrolase / hydantoinase (PYD2) (TAIR:AT5G12200.1); Has 8526 Blast hits to 8492 proteins in 1253 species: Archae - 155; Bacteria - 3083; Metazoa - 603; Fungi - 157; Plants - 44; Viruses - 0; Other Eukaryotes - 4484 (source: NCBI BLink).  protein_id AT4G04955.1p  transcript_id AT4G04955.1  protein_id AT4G04955.1p  transcript_id AT4G04955.1  
At4g04957	chr4:002527161	0.0	C/2527161-2527362,2527009-2527043	AT4G04957.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1985 (InterPro:IPR015410); BEST Arabidopsis thaliana protein match is: DML1 (DEMETER-LIKE 1); DNA N-glycosylase/ DNA-(apurinic or apyrimidinic site) lyase/ protein binding (TAIR:AT2G36490.1); Has 41 Blast hits to 41 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G04957.1p  transcript_id AT4G04957.1  protein_id AT4G04957.1p  transcript_id AT4G04957.1  
At4g04960	chr4:002533096	0.0	W/2533096-2535156	AT4G04960.1  CDS  gene_syn T32N4.9, T32N4_9  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product lectin protein kinase, putative  note lectin protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin protein kinase family protein (TAIR:AT4G28350.1); Has 83312 Blast hits to 82427 proteins in 3006 species: Archae - 60; Bacteria - 7517; Metazoa - 36302; Fungi - 6443; Plants - 18943; Viruses - 341; Other Eukaryotes - 13706 (source: NCBI BLink).  protein_id AT4G04960.1p  transcript_id AT4G04960.1  protein_id AT4G04960.1p  transcript_id AT4G04960.1  
At4g04970	chr4:002537039	0.0	W/2537039-2538049,2538139-2542434	AT4G04970.1  CDS  gene_syn ATGSL01, ATGSL1, GLUCAN SYNTHASE LIKE 1, GLUCAN SYNTHASE LIKE-1, GLUCAN SYNTHASE-LIKE 1, GSL01, GSL1, T32N4.8, T32N4_8  gene GSL1  function encodes a gene similar to callose synthase  go_component plasma membrane|GO:0005886|17317660|IDA  go_process 1,3-beta-glucan biosynthetic process|GO:0006075||IEA  go_component 1,3-beta-glucan synthase complex|GO:0000148||ISS  go_process 1,3-beta-glucan biosynthetic process|GO:0006075||ISS  go_function 1,3-beta-glucan synthase activity|GO:0003843||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product GSL1 (GLUCAN SYNTHASE-LIKE 1); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups  note GLUCAN SYNTHASE-LIKE 1 (GSL1); FUNCTIONS IN: transferase activity, transferring glycosyl groups, 1,3-beta-glucan synthase activity; INVOLVED IN: 1,3-beta-glucan biosynthetic process; LOCATED IN: 1,3-beta-glucan synthase complex, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 48 (InterPro:IPR003440); BEST Arabidopsis thaliana protein match is: ATGSL05 (GLUCAN SYNTHASE-LIKE 5); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups (TAIR:AT4G03550.1); Has 804 Blast hits to 580 proteins in 103 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 535; Plants - 239; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT4G04970.1p  transcript_id AT4G04970.1  protein_id AT4G04970.1p  transcript_id AT4G04970.1  
At4g04980	chr4:002546753	0.0	C/2546753-2546833,2546486-2546609,2545128-2546400,2544892-2545057,2544495-2544812,2544210-2544422	AT4G04980.1  CDS  gene_syn C17L7.1  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: leaf whorl, male gametophyte, sepal, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT1G61080.1); Has 21967 Blast hits to 14118 proteins in 814 species: Archae - 74; Bacteria - 1795; Metazoa - 8707; Fungi - 2897; Plants - 2880; Viruses - 936; Other Eukaryotes - 4678 (source: NCBI BLink).  protein_id AT4G04980.1p  transcript_id AT4G04980.1  protein_id AT4G04980.1p  transcript_id AT4G04980.1  
At4g04985	chr4:002548995	0.0	C/2548995-2549471	AT4G04985.1  CDS  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_component cellular_component|GO:0005575||ND  product aspartic-type endopeptidase  note aspartic-type endopeptidase; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: aspartyl protease family (TAIR:AT4G30040.1); Has 97 Blast hits to 97 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G04985.1p  transcript_id AT4G04985.1  protein_id AT4G04985.1p  transcript_id AT4G04985.1  
At4g04990	chr4:002555090	0.0	W/2555090-2555564,2556610-2557046	AT4G04990.1  CDS  gene_syn C17L7.3  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF761, plant (InterPro:IPR008480); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61260.1); Has 187 Blast hits to 187 proteins in 54 species: Archae - 0; Bacteria - 8; Metazoa - 69; Fungi - 22; Plants - 47; Viruses - 3; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT4G04990.1p  transcript_id AT4G04990.1  protein_id AT4G04990.1p  transcript_id AT4G04990.1  
At4g05000	chr4:002563953	0.0	W/2563953-2564585	AT4G05000.1  CDS  gene_syn C17L7.5, VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1, VPS28-1, VPS28-2  gene VPS28-2  go_component ESCRT I complex|GO:0000813|17090720|ISS  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product VPS28-2; transporter  note VPS28-2; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: ESCRT I complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated, VPS28, N-terminal (InterPro:IPR017898), Vacuolar protein sorting-associated, VPS28, C-terminal (InterPro:IPR017899), Vacuolar protein sorting-associated, VPS28 (InterPro:IPR007143); BEST Arabidopsis thaliana protein match is: VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1); transporter (TAIR:AT4G21560.3); Has 278 Blast hits to 277 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 101; Plants - 39; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT4G05000.1p  transcript_id AT4G05000.1  protein_id AT4G05000.1p  transcript_id AT4G05000.1  
At4g05000	chr4:002563953	0.0	W/2563953-2564585	AT4G05000.2  CDS  gene_syn C17L7.5, VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1, VPS28-1, VPS28-2  gene VPS28-2  go_component ESCRT I complex|GO:0000813|17090720|ISS  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product VPS28-2; transporter  note VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1 (VPS28-1); FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: ESCRT I complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated, VPS28, N-terminal (InterPro:IPR017898), Vacuolar protein sorting-associated, VPS28, C-terminal (InterPro:IPR017899), Vacuolar protein sorting-associated, VPS28 (InterPro:IPR007143); BEST Arabidopsis thaliana protein match is: VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1); transporter (TAIR:AT4G21560.3); Has 278 Blast hits to 277 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 101; Plants - 39; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT4G05000.2p  transcript_id AT4G05000.2  protein_id AT4G05000.2p  transcript_id AT4G05000.2  
At4g05010	chr4:002567474	0.0	W/2567474-2567689,2567771-2567845,2567959-2568162	AT4G05010.1  CDS  gene_syn C17L7.7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G21510.1); Has 44 Blast hits to 44 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G05010.1p  transcript_id AT4G05010.1  protein_id AT4G05010.1p  transcript_id AT4G05010.1  
At4g05018	chr4:002571413	0.0	W/2571413-2572120	AT4G05018.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21500.1); Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G05018.1p  transcript_id AT4G05018.1  protein_id AT4G05018.1p  transcript_id AT4G05018.1  
At4g05020	chr4:002572752	0.0	W/2572752-2572840,2573231-2573507,2573602-2573805,2573952-2574202,2574328-2574544,2574651-2574755,2574842-2575117,2575217-2575338,2575917-2576036,2576135-2576222	AT4G05020.1  CDS  gene_syn C17L7.11, NAD(P)H dehydrogenase B2, NDB2  gene NDB2  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component extrinsic to mitochondrial inner membrane|GO:0031314|16258072|IDA  go_function disulfide oxidoreductase activity|GO:0015036||ISS  product NDB2 (NAD(P)H dehydrogenase B2); FAD binding / disulfide oxidoreductase/ oxidoreductase  note NAD(P)H dehydrogenase B2 (NDB2); FUNCTIONS IN: disulfide oxidoreductase activity, oxidoreductase activity, FAD binding; LOCATED IN: extrinsic to mitochondrial inner membrane, mitochondrion; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), EF-HAND 1 (InterPro:IPR018247), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327), EF-HAND 2 (InterPro:IPR018249), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: NDB3; NADH dehydrogenase (TAIR:AT4G21490.1); Has 9447 Blast hits to 9170 proteins in 1455 species: Archae - 245; Bacteria - 6823; Metazoa - 105; Fungi - 514; Plants - 280; Viruses - 0; Other Eukaryotes - 1480 (source: NCBI BLink).  protein_id AT4G05020.1p  transcript_id AT4G05020.1  protein_id AT4G05020.1p  transcript_id AT4G05020.1  
At4g05030	chr4:002577935	0.0	C/2577935-2577974,2577781-2577848,2577252-2577327,2576790-2576938	AT4G05030.1  CDS  gene_syn C17L7.9  go_component mitochondrion|GO:0005739||IEA  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: metal ion binding (TAIR:AT3G20180.1); Has 133 Blast hits to 133 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G05030.1p  transcript_id AT4G05030.1  protein_id AT4G05030.1p  transcript_id AT4G05030.1  
At4g05040	chr4:002579888	0.0	W/2579888-2580746,2580839-2581368,2581445-2581774	AT4G05040.1  CDS  gene_syn C17L7.12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT4G14390.1); Has 21050 Blast hits to 9778 proteins in 384 species: Archae - 28; Bacteria - 1288; Metazoa - 12375; Fungi - 1344; Plants - 1284; Viruses - 111; Other Eukaryotes - 4620 (source: NCBI BLink).  protein_id AT4G05040.1p  transcript_id AT4G05040.1  protein_id AT4G05040.1p  transcript_id AT4G05040.1  
At4g05040	chr4:002579888	0.0	W/2579888-2580746,2580839-2581368,2581445-2581774	AT4G05040.2  CDS  gene_syn C17L7.12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT4G14390.1); Has 21050 Blast hits to 9778 proteins in 384 species: Archae - 28; Bacteria - 1288; Metazoa - 12375; Fungi - 1344; Plants - 1284; Viruses - 111; Other Eukaryotes - 4620 (source: NCBI BLink).  protein_id AT4G05040.2p  transcript_id AT4G05040.2  protein_id AT4G05040.2p  transcript_id AT4G05040.2  
At4g05040	chr4:002579888	0.0	W/2579888-2580746,2580839-2581368,2581445-2581774	AT4G05040.3  CDS  gene_syn C17L7.12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT4G14390.1); Has 21050 Blast hits to 9778 proteins in 384 species: Archae - 28; Bacteria - 1288; Metazoa - 12375; Fungi - 1344; Plants - 1284; Viruses - 111; Other Eukaryotes - 4620 (source: NCBI BLink).  protein_id AT4G05040.3p  transcript_id AT4G05040.3  protein_id AT4G05040.3p  transcript_id AT4G05040.3  
At4g05048	chr4:002586978	0.0	C/2586978-2587104	AT4G05048.1  snoRNA  gene_syn U49.1  gene U49.1  function Encodes a C/D box snoRNA (U49.1). Gb: AJ300655  go_component box C/D snoRNP complex|GO:0031428||TAS  go_process rRNA methylation|GO:0031167||TAS  go_function molecular_function|GO:0003674||ND  product U49.1; snoRNA  transcript_id AT4G05048.1  
At4g05049	chr4:002587563	0.0	W/2587563-2587808	AT4G05049.1  pseudogenic_transcript  pseudo  function unknown pseudogene  
At4g05050	chr4:002588271	0.0	C/2588271-2588960	AT4G05050.1  CDS  gene_syn C17L7.6, UBIQUITIN 11, UBQ11  gene UBQ11  function polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14. Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene.  go_component intracellular|GO:0005622||TAS  go_process protein modification process|GO:0006464||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|8385509|ISS  go_process response to salt stress|GO:0009651|11351099|IEP  go_function protein binding|GO:0005515|8382544|ISS  go_function protein binding|GO:0005515||ISS  product UBQ11 (UBIQUITIN 11); protein binding  note UBIQUITIN 11 (UBQ11); FUNCTIONS IN: protein binding; INVOLVED IN: response to salt stress, protein modification process, ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: UBQ10 (POLYUBIQUITIN 10); protein binding (TAIR:AT4G05320.6); Has 16299 Blast hits to 5445 proteins in 612 species: Archae - 0; Bacteria - 21; Metazoa - 8083; Fungi - 1628; Plants - 2812; Viruses - 452; Other Eukaryotes - 3303 (source: NCBI BLink).  protein_id AT4G05050.1p  transcript_id AT4G05050.1  protein_id AT4G05050.1p  transcript_id AT4G05050.1  
At4g05050	chr4:002588271	0.0	C/2588271-2588960	AT4G05050.2  CDS  gene_syn C17L7.6, UBIQUITIN 11, UBQ11  gene UBQ11  function polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14. Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene.  go_component intracellular|GO:0005622||TAS  go_process protein modification process|GO:0006464||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|8385509|ISS  go_process response to salt stress|GO:0009651|11351099|IEP  go_function protein binding|GO:0005515|8382544|ISS  go_function protein binding|GO:0005515||ISS  product UBQ11 (UBIQUITIN 11); protein binding  note UBIQUITIN 11 (UBQ11); FUNCTIONS IN: protein binding; INVOLVED IN: response to salt stress, protein modification process, ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: UBQ10 (POLYUBIQUITIN 10); protein binding (TAIR:AT4G05320.6); Has 16299 Blast hits to 5445 proteins in 612 species: Archae - 0; Bacteria - 21; Metazoa - 8083; Fungi - 1628; Plants - 2812; Viruses - 452; Other Eukaryotes - 3303 (source: NCBI BLink).  protein_id AT4G05050.2p  transcript_id AT4G05050.2  protein_id AT4G05050.2p  transcript_id AT4G05050.2  
At4g05050	chr4:002588271	0.0	C/2588271-2588960	AT4G05050.3  CDS  gene_syn C17L7.6, UBIQUITIN 11, UBQ11  gene UBQ11  function polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14. Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene.  go_component intracellular|GO:0005622||TAS  go_process protein modification process|GO:0006464||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|8385509|ISS  go_process response to salt stress|GO:0009651|11351099|IEP  go_function protein binding|GO:0005515|8382544|ISS  go_function protein binding|GO:0005515||ISS  product UBQ11 (UBIQUITIN 11); protein binding  note UBIQUITIN 11 (UBQ11); FUNCTIONS IN: protein binding; INVOLVED IN: response to salt stress, protein modification process, ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: UBQ10 (POLYUBIQUITIN 10); protein binding (TAIR:AT4G05320.6); Has 16299 Blast hits to 5445 proteins in 612 species: Archae - 0; Bacteria - 21; Metazoa - 8083; Fungi - 1628; Plants - 2812; Viruses - 452; Other Eukaryotes - 3303 (source: NCBI BLink).  protein_id AT4G05050.3p  transcript_id AT4G05050.3  protein_id AT4G05050.3p  transcript_id AT4G05050.3  
At4g05053	chr4:002589637	0.0	W/2589637-2590097	AT4G05053.1  pseudogenic_transcript  pseudo  function pseudogene of ATRCY1 (arginine-rich cyclin)  
At4g05060	chr4:002591667	0.0	C/2591667-2592000,2591277-2591347,2591108-2591189,2590872-2590990,2590684-2590761,2590427-2590549,2590245-2590301	AT4G05060.1  CDS  gene_syn C17L7.8  go_component chloroplast|GO:0009507||IEA  go_function structural molecule activity|GO:0005198||IEA  go_process biological_process|GO:0008150||ND  go_function structural molecule activity|GO:0005198||ISS  product vesicle-associated membrane family protein / VAMP family protein  note vesicle-associated membrane family protein / VAMP family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535); BEST Arabidopsis thaliana protein match is: vesicle-associated membrane family protein / VAMP family protein (TAIR:AT4G21450.1); Has 349 Blast hits to 348 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 134; Fungi - 30; Plants - 165; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT4G05060.1p  transcript_id AT4G05060.1  protein_id AT4G05060.1p  transcript_id AT4G05060.1  
At4g05070	chr4:002593786	0.0	C/2593786-2594049	AT4G05070.1  CDS  gene_syn C17L7.2  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 17 Blast hits to 17 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G05070.1p  transcript_id AT4G05070.1  protein_id AT4G05070.1p  transcript_id AT4G05070.1  
At4g05071	chr4:002594154	0.0	C/2594154-2594297	AT4G05071.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G05071.1p  transcript_id AT4G05071.1  protein_id AT4G05071.1p  transcript_id AT4G05071.1  
At4g05073	chr4:002597658	0.0	C/2597658-2601681	AT4G05073.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 5.1e-300 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At4g05076	chr4:002602084	0.0	C/2602084-2602563	AT4G05076.1  pseudogenic_transcript  pseudo  function pseudogene of unknown protein  note pseudogene, expressed protein, similar to putative non-LTR retroelement reverse transcriptase  
At4g05080	chr4:002603001	0.0	W/2603001-2604176	AT4G05080.1  CDS  gene_syn C17L7.4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G19880.1); Has 554 Blast hits to 534 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 554; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G05080.1p  transcript_id AT4G05080.1  protein_id AT4G05080.1p  transcript_id AT4G05080.1  
At4g05087	chr4:002608080	0.0	W/2608080-2608299	AT4G05087.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G16486  
At4g05090	chr4:002609244	0.0	W/2609244-2609344,2609439-2609535,2609616-2609718,2609783-2609994,2610320-2610379,2610625-2610965,2611092-2611170,2611256-2611306,2611478-2611627	AT4G05090.1  CDS  gene_syn C17L7.10, C17L7_10  go_component chloroplast|GO:0009507|18431481|IDA  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437||IEA  go_process sulfur metabolic process|GO:0006790||ISS  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437||ISS  go_function 3 (2 ),5 -bisphosphate nucleotidase activity|GO:0008441||ISS  product inositol monophosphatase family protein  note inositol monophosphatase family protein; FUNCTIONS IN: 3 (2 ),5 -bisphosphate nucleotidase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: sulfur metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inositol monophosphatase (InterPro:IPR000760); BEST Arabidopsis thaliana protein match is: SAL1; 3 (2 ),5 -bisphosphate nucleotidase/ inositol or phosphatidylinositol phosphatase (TAIR:AT5G63980.1); Has 3732 Blast hits to 3732 proteins in 818 species: Archae - 22; Bacteria - 1713; Metazoa - 80; Fungi - 151; Plants - 134; Viruses - 0; Other Eukaryotes - 1632 (source: NCBI BLink).  protein_id AT4G05090.1p  transcript_id AT4G05090.1  protein_id AT4G05090.1p  transcript_id AT4G05090.1  
At4g05091	chr4:002611781	0.0	W/2611781-2611981	AT4G05091.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G05091.1p  transcript_id AT4G05091.1  protein_id AT4G05091.1p  transcript_id AT4G05091.1  
At4g05095	chr4:002613798	0.0	C/2613798-2614214	AT4G05095.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G04650.1); Has 102 Blast hits to 102 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G05095.1p  transcript_id AT4G05095.1  protein_id AT4G05095.1p  transcript_id AT4G05095.1  
At4g05100	chr4:002618557	0.0	W/2618557-2618692,2618785-2618914,2619082-2619790	AT4G05100.1  CDS  gene_syn AtMYB74, C17L7.20, C17L7_20, myb domain protein 74  gene AtMYB74  function Member of the R2R3 factor gene family.  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16258012|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product AtMYB74 (myb domain protein 74); DNA binding / transcription factor  note myb domain protein 74 (AtMYB74); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to jasmonic acid stimulus, response to ethylene stimulus, response to salt stress, response to abscisic acid stimulus, regulation of transcription, DNA-dependent; EXPRESSED IN: stem, leaf whorl, sepal, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: ATMYB102 (ARABIDOPSIS MYB-LIKE 102); DNA binding / transcription factor (TAIR:AT4G21440.1); Has 6408 Blast hits to 5922 proteins in 370 species: Archae - 0; Bacteria - 0; Metazoa - 653; Fungi - 305; Plants - 3804; Viruses - 4; Other Eukaryotes - 1642 (source: NCBI BLink).  protein_id AT4G05100.1p  transcript_id AT4G05100.1  protein_id AT4G05100.1p  transcript_id AT4G05100.1  
At4g05105	chr4:002625950	0.0	W/2625950-2626056	AT4G05105.1  miRNA  gene_syn MICRORNA397A, MIR397A  gene MIR397A  function Encodes a microRNA that targets several Laccase family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCAUUGAGUGCAGCGUUGAUG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR397A (MICRORNA397A); miRNA  transcript_id AT4G05105.1  
At4g05110	chr4:002628644	0.0	C/2628644-2628685,2628442-2628546,2628174-2628329,2627931-2628074,2627732-2627837,2627469-2627641,2626822-2627238,2626516-2626629	AT4G05110.1  CDS  gene_syn C17L7.30, C17L7_30  go_component plasma membrane|GO:0005886|14506206|IDA  go_process transport|GO:0006810||IEA  go_function nucleoside transmembrane transporter activity|GO:0005337||ISS  product equilibrative nucleoside transporter, putative (ENT6)  note equilibrative nucleoside transporter, putative (ENT6); FUNCTIONS IN: nucleoside transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Delayed-early response protein/equilibrative nucleoside transporter (InterPro:IPR002259); BEST Arabidopsis thaliana protein match is: FUR1 (FUDR RESISTANT 1); nucleoside transmembrane transporter (TAIR:AT4G05120.1); Has 709 Blast hits to 676 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 379; Fungi - 70; Plants - 92; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).  protein_id AT4G05110.1p  transcript_id AT4G05110.1  protein_id AT4G05110.1p  transcript_id AT4G05110.1  
At4g05120	chr4:002634783	0.0	C/2634783-2634824,2634571-2634675,2634303-2634458,2634062-2634205,2633869-2633974,2633614-2633786,2633105-2633521,2632886-2632999	AT4G05120.1  CDS  gene_syn C17L7.40, C17L7_40, ENT3, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, FUDR RESISTANT 1, FUR1  gene FUR1  function Encodes an equilibrative nucleoside transporter AtENT3. Mutations of this locus allow mutants to grow on uridine analogue fluorouridine.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process nucleoside transport|GO:0015858|17253988|IMP  go_process pyrimidine nucleoside transport|GO:0015864||IMP  go_function nucleoside transmembrane transporter activity|GO:0005337|17253988|IMP  go_function nucleoside transmembrane transporter activity|GO:0005337||ISS  product FUR1 (FUDR RESISTANT 1); nucleoside transmembrane transporter  note FUDR RESISTANT 1 (FUR1); FUNCTIONS IN: nucleoside transmembrane transporter activity; INVOLVED IN: nucleoside transport, pyrimidine nucleoside transport; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Delayed-early response protein/equilibrative nucleoside transporter (InterPro:IPR002259), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: equilibrative nucleoside transporter, putative (ENT6) (TAIR:AT4G05110.1); Has 704 Blast hits to 681 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 371; Fungi - 66; Plants - 93; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink).  protein_id AT4G05120.1p  transcript_id AT4G05120.1  protein_id AT4G05120.1p  transcript_id AT4G05120.1  
At4g05130	chr4:002638924	0.0	C/2638924-2638965,2638732-2638836,2638482-2638637,2638239-2638382,2638047-2638152,2637786-2637958,2637226-2637642,2636875-2636988	AT4G05130.1  CDS  gene_syn C17L7.50, C17L7_50  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function nucleoside transmembrane transporter activity|GO:0005337||ISS  product equilibrative nucleoside transporter, putative (ENT4)  note equilibrative nucleoside transporter, putative (ENT4); FUNCTIONS IN: nucleoside transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Delayed-early response protein/equilibrative nucleoside transporter (InterPro:IPR002259), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: FUR1 (FUDR RESISTANT 1); nucleoside transmembrane transporter (TAIR:AT4G05120.1); Has 664 Blast hits to 632 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 374; Fungi - 66; Plants - 92; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).  protein_id AT4G05130.1p  transcript_id AT4G05130.1  protein_id AT4G05130.1p  transcript_id AT4G05130.1  
At4g05133	chr4:002644057	0.0	C/2644057-2648132	AT4G05133.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At4g05136	chr4:002649683	0.0	C/2649683-2649898	AT4G05136.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF321 (InterPro:IPR005529); Has 62 Blast hits to 19 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G05136.1p  transcript_id AT4G05136.1  protein_id AT4G05136.1p  transcript_id AT4G05136.1  
At4g05140	chr4:002653167	0.0	C/2653167-2653208,2652966-2653070,2652699-2652854,2652473-2652616,2652288-2652393,2652016-2652188,2651428-2651847,2651015-2651128	AT4G05140.1  CDS  gene_syn C17L7.60, C17L7_60  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function nucleoside transmembrane transporter activity|GO:0005337||ISS  product equilibrative nucleoside transporter family protein  note equilibrative nucleoside transporter family protein; FUNCTIONS IN: nucleoside transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Delayed-early response protein/equilibrative nucleoside transporter (InterPro:IPR002259); BEST Arabidopsis thaliana protein match is: FUR1 (FUDR RESISTANT 1); nucleoside transmembrane transporter (TAIR:AT4G05120.1); Has 637 Blast hits to 600 proteins in 126 species: Archae - 0; Bacteria - 2; Metazoa - 337; Fungi - 57; Plants - 93; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink).  protein_id AT4G05140.1p  transcript_id AT4G05140.1  protein_id AT4G05140.1p  transcript_id AT4G05140.1  
At4g05145	chr4:002654176	0.0	W/2654176-2655066	AT4G05145.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G11710.1); similar to hypothetical protein 23.t00046 [Brassica oleracea] (GB:ABD65629.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446)  
At4g05150	chr4:002660339	0.0	W/2660339-2660660,2661564-2662675	AT4G05150.1  CDS  gene_syn C17L7.70, C17L7_70  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product octicosapeptide/Phox/Bem1p (PB1) domain-containing protein  note octicosapeptide/Phox/Bem1p (PB1) domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (TAIR:AT2G01190.1); Has 516 Blast hits to 470 proteins in 95 species: Archae - 0; Bacteria - 10; Metazoa - 97; Fungi - 47; Plants - 326; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT4G05150.1p  transcript_id AT4G05150.1  protein_id AT4G05150.1p  transcript_id AT4G05150.1  
At4g05160	chr4:002664451	0.0	W/2664451-2665464,2665605-2665794,2665868-2666013,2666109-2666176,2666249-2666351,2666434-2666547	AT4G05160.1  CDS  gene_syn C17L7.80, C17L7_80  function Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At4g05160 preferentially activates fatty acids with medium chain length (C6:0 and C7:0) as well as even-numbered long-chain fatty acids (C14:0, C16:0 and C18:0). At4g05160 was also able to catalyze the conversion of OPC-6:0 to its CoA ester and is therefore thought to be involved in the peroxisomal & 946;-oxidation steps of jasmonic acid biosynthesis.  go_component peroxisome|GO:0005777|17951448|IDA  go_component peroxisome|GO:0005777|15677481|IDA  go_process jasmonic acid biosynthetic process|GO:0009695|15677481|IDA  go_process auxin metabolic process|GO:0009850|15677481|IDA  go_process auxin biosynthetic process|GO:0009851|15677481|IDA  go_function fatty-acyl-CoA synthase activity|GO:0004321|15677481|IDA  go_function 4-coumarate-CoA ligase activity|GO:0016207||ISS  product 4-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putative  note 4-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putative; FUNCTIONS IN: 4-coumarate-CoA ligase activity, fatty-acyl-CoA synthase activity; INVOLVED IN: jasmonic acid biosynthetic process, auxin biosynthetic process, auxin metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: OPCL1 (OPC-8:0 COA LIGASE1); 4-coumarate-CoA ligase (TAIR:AT1G20510.1); Has 57920 Blast hits to 53562 proteins in 2305 species: Archae - 575; Bacteria - 29837; Metazoa - 3088; Fungi - 3166; Plants - 1366; Viruses - 1; Other Eukaryotes - 19887 (source: NCBI BLink).  protein_id AT4G05160.1p  transcript_id AT4G05160.1  protein_id AT4G05160.1p  transcript_id AT4G05160.1  
At4g05170	chr4:002669180	0.0	C/2669180-2669187,2668856-2669090,2668604-2668765,2668439-2668504,2668301-2668351,2667990-2668184	AT4G05170.1  CDS  gene_syn C17L7.90, C17L7_90  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634|16581911|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product DNA binding / transcription factor  note DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: B70; transcription factor (TAIR:AT4G21340.1); Has 823 Blast hits to 823 proteins in 34 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 4; Plants - 814; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G05170.1p  transcript_id AT4G05170.1  protein_id AT4G05170.1p  transcript_id AT4G05170.1  
At4g05180	chr4:002672873	0.0	C/2672873-2673170,2672340-2672635,2672093-2672191	AT4G05180.1  CDS  gene_syn C17L7.100, C17L7_100, OEC16, OXYGEN EVOLVING COMPLEX SUBUNIT 16 KDA, PHOTOSYSTEM II SUBUNIT Q, PSBQ, PSBQ-2, PSII-Q  gene PSBQ-2  function Encodes the PsbQ subunit of the oxygen evolving complex of photosystem II.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function calcium ion binding|GO:0005509||IEA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  go_component oxygen evolving complex|GO:0009654||ISS  go_component chloroplast photosystem II|GO:0030095||ISS  go_process peptidyl-cysteine S-nitrosylation|GO:0018119|18297659|IDA  product PSBQ-2; calcium ion binding  note PSBQ-2; FUNCTIONS IN: calcium ion binding; INVOLVED IN: peptidyl-cysteine S-nitrosylation; LOCATED IN: in 9 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbQ (InterPro:IPR008797); BEST Arabidopsis thaliana protein match is: oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ) (TAIR:AT4G21280.1); Has 138 Blast hits to 138 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G05180.1p  transcript_id AT4G05180.1  protein_id AT4G05180.1p  transcript_id AT4G05180.1  
At4g05190	chr4:002675338	0.0	W/2675338-2675385,2675585-2675794,2675884-2676028,2676115-2676224,2676327-2676446,2676569-2676772,2676874-2677083,2677158-2677232,2677348-2677494,2677576-2677714,2677814-2677923,2678179-2678340,2678422-2678642,2678750-2678831,2678920-2679024,2679111-2679215,2679303-2679482	AT4G05190.1  CDS  gene_syn ARABIDOPSIS THALIANA KINESIN 5, ATK5, C17L7.110, C17L7_110  gene ATK5  function ATK5 encodes a kinesin protein involved in microtubule spindle morphogenesis. It acts as a minus-end directed motor as well as a plus-end tracking protein (+TIP). Localizes to mitotic spindle midzones and regions rich in growing plus-ends within phragmoplasts.  go_component nucleus|GO:0005634|14617066|IDA  go_component spindle microtubule|GO:0005876|15659646|IDA  go_process microtubule cytoskeleton organization|GO:0000226|15659646|IMP  go_process spindle assembly|GO:0051225|17220198|IMP  go_function microtubule motor activity|GO:0003777|15659646|IMP  go_function microtubule motor activity|GO:0003777||ISS  product ATK5 (ARABIDOPSIS THALIANA KINESIN 5); microtubule motor  note ARABIDOPSIS THALIANA KINESIN 5 (ATK5); FUNCTIONS IN: microtubule motor activity; INVOLVED IN: spindle assembly, microtubule cytoskeleton organization; LOCATED IN: spindle microtubule, nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATK1 (ARABIDOPSIS THALIANA KINESIN 1); microtubule motor/ minus-end-directed microtubule motor (TAIR:AT4G21270.1); Has 74222 Blast hits to 41407 proteins in 1600 species: Archae - 631; Bacteria - 6042; Metazoa - 40138; Fungi - 5714; Plants - 2991; Viruses - 240; Other Eukaryotes - 18466 (source: NCBI BLink).  protein_id AT4G05190.1p  transcript_id AT4G05190.1  protein_id AT4G05190.1p  transcript_id AT4G05190.1  
At4g05200	chr4:002681481	0.0	C/2681481-2682309,2681264-2681401,2681054-2681175,2680757-2680967,2680440-2680677,2680205-2680355,2679793-2680131	AT4G05200.1  CDS  gene_syn C17L7.120, C17L7_120  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CRK10 (CYSTEINE-RICH RLK10); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT4G23180.1); Has 90034 Blast hits to 88854 proteins in 3106 species: Archae - 51; Bacteria - 7887; Metazoa - 39032; Fungi - 7119; Plants - 20067; Viruses - 413; Other Eukaryotes - 15465 (source: NCBI BLink).  protein_id AT4G05200.1p  transcript_id AT4G05200.1  protein_id AT4G05200.1p  transcript_id AT4G05200.1  
At4g05210	chr4:002682867	0.0	W/2682867-2682934,2683082-2683213,2683402-2683617,2683707-2683765,2683843-2683892,2683978-2684042,2684116-2684167,2684256-2684326,2684420-2684486,2684566-2684637,2684852-2684899	AT4G05210.1  CDS  gene_syn C17L7.130, C17L7_130  go_function transferase activity|GO:0016740||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product bacterial transferase hexapeptide repeat-containing protein  note bacterial transferase hexapeptide repeat-containing protein; FUNCTIONS IN: transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Hexapeptide transferase, conserved site (InterPro:IPR018357), Trimeric LpxA-like (InterPro:IPR011004), Bacterial transferase hexapeptide repeat (InterPro:IPR001451); BEST Arabidopsis thaliana protein match is: bacterial transferase hexapeptide repeat-containing protein (TAIR:AT4G21220.1); Has 8188 Blast hits to 8129 proteins in 1092 species: Archae - 34; Bacteria - 4394; Metazoa - 7; Fungi - 17; Plants - 28; Viruses - 3; Other Eukaryotes - 3705 (source: NCBI BLink).  protein_id AT4G05210.1p  transcript_id AT4G05210.1  protein_id AT4G05210.1p  transcript_id AT4G05210.1  
At4g05220	chr4:002685104	0.0	C/2685104-2685784	AT4G05220.1  CDS  gene_syn C17L7.140, C17L7_140  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product harpin-induced protein-related / HIN1-related / harpin-responsive protein-related  note harpin-induced protein-related / HIN1-related / harpin-responsive protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: harpin-induced protein-related / HIN1-related / harpin-responsive protein-related (TAIR:AT1G61760.1); Has 591 Blast hits to 591 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 591; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G05220.1p  transcript_id AT4G05220.1  protein_id AT4G05220.1p  transcript_id AT4G05220.1  
At4g05230	chr4:002687003	0.0	W/2687003-2687623	AT4G05230.1  CDS  gene_syn C17L7.150, C17L7_150  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product ubiquitin family protein  note ubiquitin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: ubiquitin family protein (TAIR:AT4G05260.1); Has 3270 Blast hits to 1167 proteins in 331 species: Archae - 0; Bacteria - 0; Metazoa - 1572; Fungi - 385; Plants - 869; Viruses - 63; Other Eukaryotes - 381 (source: NCBI BLink).  protein_id AT4G05230.1p  transcript_id AT4G05230.1  protein_id AT4G05230.1p  transcript_id AT4G05230.1  
At4g05240	chr4:002688200	0.0	W/2688200-2688399,2688625-2689018	AT4G05240.1  CDS  gene_syn C17L7.160, C17L7_160  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product ubiquitin family protein  note ubiquitin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: ubiquitin family protein (TAIR:AT4G05250.1); Has 41 Blast hits to 41 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G05240.1p  transcript_id AT4G05240.1  protein_id AT4G05240.1p  transcript_id AT4G05240.1  
At4g05250	chr4:002691460	0.0	W/2691460-2692416	AT4G05250.1  CDS  gene_syn C17L7.170, C17L7_170  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product ubiquitin family protein  note ubiquitin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: ubiquitin family protein (TAIR:AT4G05240.1); Has 194 Blast hits to 179 proteins in 57 species: Archae - 0; Bacteria - 2; Metazoa - 65; Fungi - 8; Plants - 70; Viruses - 2; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT4G05250.1p  transcript_id AT4G05250.1  protein_id AT4G05250.1p  transcript_id AT4G05250.1  
At4g05260	chr4:002693680	0.0	W/2693680-2694459	AT4G05260.1  CDS  gene_syn C17L7.180, C17L7_180  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product ubiquitin family protein  note ubiquitin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: ubiquitin family protein (TAIR:AT4G05230.1); Has 46 Blast hits to 44 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G05260.1p  transcript_id AT4G05260.1  protein_id AT4G05260.1p  transcript_id AT4G05260.1  
At4g05265	chr4:002694713	0.0	C/2694713-2694850	AT4G05265.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G05265.1p  transcript_id AT4G05265.1  protein_id AT4G05265.1p  transcript_id AT4G05265.1  
At4g05270	chr4:002694939	0.0	W/2694939-2695328	AT4G05270.1  CDS  gene_syn C17L7.190, C17L7_190  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product ubiquitin family protein  note ubiquitin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: ubiquitin family protein (TAIR:AT4G05310.1); Has 85 Blast hits to 85 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 4; Plants - 61; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT4G05270.1p  transcript_id AT4G05270.1  protein_id AT4G05270.1p  transcript_id AT4G05270.1  
At4g05280	chr4:002697581	0.0	W/2697581-2703505	AT4G05280.1  mRNA_TE_gene  pseudo  gene_syn C17L7.200, C17L7_200  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G27780.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G34740.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G42730.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At4g05290	chr4:002704225	0.0	W/2704225-2704866	AT4G05290.1  mRNA_TE_gene  pseudo  gene_syn C17L7.210, C17L7_210  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05564.1); similar to hypothetical protein 40.t00047 [Brassica oleracea] (GB:ABD65162.1)  
At4g05300	chr4:002705670	0.0	W/2705670-2708158	AT4G05300.1  mRNA_TE_gene  pseudo  gene_syn C17L7.220, C17L7_220  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G43380.1); contains domain Hedgehog/intein (Hint) domain (SSF51294)  
At4g05303	chr4:002708986	0.0	C/2708986-2709934	AT4G05303.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G43370.1); similar to hypothetical protein 31.t00082 [Brassica oleracea] (GB:ABD65101.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At4g05306	chr4:002710556	0.0	C/2710556-2713433	AT4G05306.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 2.4e-82 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g05310	chr4:002714765	0.0	W/2714765-2716012	AT4G05310.1  CDS  gene_syn C17L7.230, C17L7_230  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product ubiquitin family protein  note ubiquitin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: ubiquitin family protein (TAIR:AT4G05270.1); Has 123 Blast hits to 98 proteins in 28 species: Archae - 0; Bacteria - 4; Metazoa - 11; Fungi - 6; Plants - 78; Viruses - 2; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT4G05310.1p  transcript_id AT4G05310.1  protein_id AT4G05310.1p  transcript_id AT4G05310.1  
At4g05320	chr4:002718559	0.0	W/2718559-2718773,2719002-2719932	AT4G05320.6  CDS  gene_syn C17L7.240, C17L7_240, POLYUBIQUITIN 10, UBQ10  gene UBQ10  function One of five polyubiquitin genes in A. thaliana. These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid.  go_process protein modification process|GO:0006464|8385509|TAS  go_process protein modification process|GO:0006464||ISS  go_process aging|GO:0007568|9617812|IEP  go_process response to salicylic acid stimulus|GO:0009751|16307367|IEP  go_function protein binding|GO:0005515|8382544|ISS  go_function protein binding|GO:0005515||ISS  product UBQ10 (POLYUBIQUITIN 10); protein binding  note POLYUBIQUITIN 10 (UBQ10); FUNCTIONS IN: protein binding; INVOLVED IN: protein modification process, aging, response to salicylic acid stimulus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: UBQ4; protein binding (TAIR:AT5G20620.1); Has 22721 Blast hits to 5454 proteins in 614 species: Archae - 0; Bacteria - 37; Metazoa - 10990; Fungi - 2256; Plants - 3951; Viruses - 753; Other Eukaryotes - 4734 (source: NCBI BLink).  protein_id AT4G05320.6p  transcript_id AT4G05320.6  protein_id AT4G05320.6p  transcript_id AT4G05320.6  
At4g05320	chr4:002718559	0.0	W/2718559-2718911,2719368-2719932	AT4G05320.5  CDS  gene_syn C17L7.240, C17L7_240, POLYUBIQUITIN 10, UBQ10  gene UBQ10  function One of five polyubiquitin genes in A. thaliana. These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid.  go_process protein modification process|GO:0006464|8385509|TAS  go_process protein modification process|GO:0006464||ISS  go_process aging|GO:0007568|9617812|IEP  go_process response to salicylic acid stimulus|GO:0009751|16307367|IEP  go_function protein binding|GO:0005515|8382544|ISS  go_function protein binding|GO:0005515||ISS  product UBQ10 (POLYUBIQUITIN 10); protein binding  note POLYUBIQUITIN 10 (UBQ10); FUNCTIONS IN: protein binding; INVOLVED IN: protein modification process, aging, response to salicylic acid stimulus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: UBQ14; protein binding (TAIR:AT4G02890.4); Has 18326 Blast hits to 5449 proteins in 614 species: Archae - 0; Bacteria - 30; Metazoa - 8801; Fungi - 1841; Plants - 3231; Viruses - 601; Other Eukaryotes - 3822 (source: NCBI BLink).  protein_id AT4G05320.5p  transcript_id AT4G05320.5  protein_id AT4G05320.5p  transcript_id AT4G05320.5  
At4g05320	chr4:002718559	0.0	W/2718559-2719062,2719291-2719932	AT4G05320.1  CDS  gene_syn C17L7.240, C17L7_240, POLYUBIQUITIN 10, UBQ10  gene UBQ10  function One of five polyubiquitin genes in A. thaliana. These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid.  go_process protein modification process|GO:0006464|8385509|TAS  go_process protein modification process|GO:0006464||ISS  go_process aging|GO:0007568|9617812|IEP  go_process response to salicylic acid stimulus|GO:0009751|16307367|IEP  go_function protein binding|GO:0005515|8382544|ISS  go_function protein binding|GO:0005515||ISS  product UBQ10 (POLYUBIQUITIN 10); protein binding  note POLYUBIQUITIN 10 (UBQ10); FUNCTIONS IN: protein binding; INVOLVED IN: protein modification process, aging, response to salicylic acid stimulus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: UBQ4; protein binding (TAIR:AT5G20620.1); Has 22721 Blast hits to 5454 proteins in 614 species: Archae - 0; Bacteria - 37; Metazoa - 10990; Fungi - 2256; Plants - 3951; Viruses - 753; Other Eukaryotes - 4734 (source: NCBI BLink).  protein_id AT4G05320.1p  transcript_id AT4G05320.1  protein_id AT4G05320.1p  transcript_id AT4G05320.1  
At4g05320	chr4:002718559	0.0	W/2718559-2719932	AT4G05320.2  CDS  gene_syn C17L7.240, C17L7_240, POLYUBIQUITIN 10, UBQ10  gene UBQ10  function One of five polyubiquitin genes in A. thaliana. These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid.  go_process protein modification process|GO:0006464|8385509|TAS  go_process protein modification process|GO:0006464||ISS  go_process aging|GO:0007568|9617812|IEP  go_process response to salicylic acid stimulus|GO:0009751|16307367|IEP  go_function protein binding|GO:0005515|8382544|ISS  go_function protein binding|GO:0005515||ISS  product UBQ10 (POLYUBIQUITIN 10); protein binding  note POLYUBIQUITIN 10 (UBQ10); FUNCTIONS IN: protein binding; INVOLVED IN: protein modification process, aging, response to salicylic acid stimulus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: UBQ4; protein binding (TAIR:AT5G20620.1); Has 27560 Blast hits to 5457 proteins in 614 species: Archae - 0; Bacteria - 44; Metazoa - 13310; Fungi - 2764; Plants - 4797; Viruses - 904; Other Eukaryotes - 5741 (source: NCBI BLink).  protein_id AT4G05320.2p  transcript_id AT4G05320.2  protein_id AT4G05320.2p  transcript_id AT4G05320.2  
At4g05320	chr4:002718559	0.0	W/2718559-2719932	AT4G05320.4  CDS  gene_syn C17L7.240, C17L7_240, POLYUBIQUITIN 10, UBQ10  gene UBQ10  function One of five polyubiquitin genes in A. thaliana. These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid.  go_process protein modification process|GO:0006464|8385509|TAS  go_process protein modification process|GO:0006464||ISS  go_process aging|GO:0007568|9617812|IEP  go_process response to salicylic acid stimulus|GO:0009751|16307367|IEP  go_function protein binding|GO:0005515|8382544|ISS  go_function protein binding|GO:0005515||ISS  product UBQ10 (POLYUBIQUITIN 10); protein binding  note POLYUBIQUITIN 10 (UBQ10); FUNCTIONS IN: protein binding; INVOLVED IN: protein modification process, aging, response to salicylic acid stimulus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: UBQ4; protein binding (TAIR:AT5G20620.1); Has 27560 Blast hits to 5457 proteins in 614 species: Archae - 0; Bacteria - 44; Metazoa - 13310; Fungi - 2764; Plants - 4797; Viruses - 904; Other Eukaryotes - 5741 (source: NCBI BLink).  protein_id AT4G05320.4p  transcript_id AT4G05320.4  protein_id AT4G05320.4p  transcript_id AT4G05320.4  
At4g05320	chr4:002718787	0.0	W/2718787-2719932	AT4G05320.3  CDS  gene_syn C17L7.240, C17L7_240, POLYUBIQUITIN 10, UBQ10  gene UBQ10  function One of five polyubiquitin genes in A. thaliana. These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid.  go_process protein modification process|GO:0006464|8385509|TAS  go_process protein modification process|GO:0006464||ISS  go_process aging|GO:0007568|9617812|IEP  go_process response to salicylic acid stimulus|GO:0009751|16307367|IEP  go_function protein binding|GO:0005515|8382544|ISS  go_function protein binding|GO:0005515||ISS  product UBQ10 (POLYUBIQUITIN 10); protein binding  note POLYUBIQUITIN 10 (UBQ10); FUNCTIONS IN: protein binding; INVOLVED IN: protein modification process, aging, response to salicylic acid stimulus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: UBQ4; protein binding (TAIR:AT5G20620.1); Has 22721 Blast hits to 5454 proteins in 614 species: Archae - 0; Bacteria - 37; Metazoa - 10990; Fungi - 2256; Plants - 3951; Viruses - 753; Other Eukaryotes - 4734 (source: NCBI BLink).  protein_id AT4G05320.3p  transcript_id AT4G05320.3  protein_id AT4G05320.3p  transcript_id AT4G05320.3  
At4g05330	chr4:002722640	0.0	C/2722640-2722679,2722418-2722499,2722040-2722115,2721759-2721922,2721526-2721673,2721320-2721442,2721139-2721234,2720772-2721053	AT4G05330.1  CDS  gene_syn AGD13, ARF-GAP domain 13, C6L9.10, C6L9_10  gene AGD13  function A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.  go_process regulation of ARF GTPase activity|GO:0032312||IEA  go_function ARF GTPase activator activity|GO:0008060||IEA  go_function zinc ion binding|GO:0008270||IEA  product AGD13 (ARF-GAP domain 13); ARF GTPase activator/ zinc ion binding  note ARF-GAP domain 13 (AGD13); FUNCTIONS IN: ARF GTPase activator activity, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: ZAC; ARF GTPase activator/ phospholipid binding (TAIR:AT4G21160.4); Has 6094 Blast hits to 5589 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 3837; Fungi - 832; Plants - 759; Viruses - 0; Other Eukaryotes - 666 (source: NCBI BLink).  protein_id AT4G05330.1p  transcript_id AT4G05330.1  protein_id AT4G05330.1p  transcript_id AT4G05330.1  
At4g05340	chr4:002725690	0.0	W/2725690-2725767,2725853-2726065	AT4G05340.1  CDS  gene_syn C6L9.20, C6L9_20  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product ATP binding  note ATP binding; FUNCTIONS IN: ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT4G05380.1); Has 859 Blast hits to 855 proteins in 163 species: Archae - 0; Bacteria - 49; Metazoa - 137; Fungi - 237; Plants - 316; Viruses - 9; Other Eukaryotes - 111 (source: NCBI BLink).  protein_id AT4G05340.1p  transcript_id AT4G05340.1  protein_id AT4G05340.1p  transcript_id AT4G05340.1  
At4g05350	chr4:002726910	0.0	C/2726910-2727530	AT4G05350.1  CDS  gene_syn C6L9.30, C6L9_30  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G12210.1); Has 5662 Blast hits to 5617 proteins in 204 species: Archae - 0; Bacteria - 4; Metazoa - 1918; Fungi - 501; Plants - 2119; Viruses - 22; Other Eukaryotes - 1098 (source: NCBI BLink).  protein_id AT4G05350.1p  transcript_id AT4G05350.1  protein_id AT4G05350.1p  transcript_id AT4G05350.1  
At4g05360	chr4:002728204	0.0	W/2728204-2728264,2728476-2728625,2728710-2728740,2728989-2729110,2729194-2729435,2729564-2729710,2729799-2729884,2729969-2730077,2731001-2732167,2732245-2732337	AT4G05360.1  CDS  gene_syn C6L9.40, C6L9_40  go_component nuclear chromosome|GO:0000228||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function nucleic acid binding|GO:0003676||ISS  product zinc knuckle (CCHC-type) family protein  note zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: nuclear chromosome; CONTAINS InterPro DOMAIN/s: Rad21/Rec8 like protein, C-terminal (InterPro:IPR006909), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: SYN3 (TAIR:AT3G59550.1); Has 109 Blast hits to 105 proteins in 29 species: Archae - 0; Bacteria - 4; Metazoa - 14; Fungi - 16; Plants - 55; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT4G05360.1p  transcript_id AT4G05360.1  protein_id AT4G05360.1p  transcript_id AT4G05360.1  
At4g05370	chr4:002736135	0.0	W/2736135-2736584	AT4G05370.1  CDS  gene_syn C6L9.50, C6L9_50  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G43910.1); Has 58 Blast hits to 57 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G05370.1p  transcript_id AT4G05370.1  protein_id AT4G05370.1p  transcript_id AT4G05370.1  
At4g05380	chr4:002737146	0.0	W/2737146-2737514,2737606-2737983	AT4G05380.1  CDS  gene_syn C6L9.60, C6L9_60  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ATPase activity|GO:0016887||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G43910.1); Has 13861 Blast hits to 12842 proteins in 1603 species: Archae - 699; Bacteria - 4022; Metazoa - 2536; Fungi - 1870; Plants - 1236; Viruses - 28; Other Eukaryotes - 3470 (source: NCBI BLink).  protein_id AT4G05380.1p  transcript_id AT4G05380.1  protein_id AT4G05380.1p  transcript_id AT4G05380.1  
At4g05390	chr4:002740457	0.0	C/2740457-2740483,2740321-2740374,2739754-2740089,2739421-2739640,2738839-2739338	AT4G05390.1  CDS  gene_syn ATRFNR1, C6L9.70, C6L9_70, FERREDOXIN:NADP(H) OXIDOREDUCTASE, ROOT FNR 1  gene ATRFNR1  function Encodes a root-type ferredoxin:NADP(H) oxidoreductase.  go_component chloroplast|GO:0009507||IEA  go_component thylakoid membrane|GO:0042651||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function ferredoxin-NADP+ reductase activity|GO:0004324||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product ATRFNR1 (ROOT FNR 1); FAD binding / NADP or NADPH binding / electron carrier/ ferredoxin-NADP+ reductase/ oxidoreductase  note ROOT FNR 1 (ATRFNR1); FUNCTIONS IN: electron carrier activity, NADP or NADPH binding, ferredoxin-NADP+ reductase activity, oxidoreductase activity, FAD binding; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast, thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), Ferredoxin--NADP reductase (InterPro:IPR012146); BEST Arabidopsis thaliana protein match is: ATRFNR2 (ROOT FNR 2); FAD binding / NADP or NADPH binding / electron carrier/ ferredoxin-NADP+ reductase/ oxidoreductase (TAIR:AT1G30510.1); Has 4506 Blast hits to 4506 proteins in 1031 species: Archae - 2; Bacteria - 2081; Metazoa - 634; Fungi - 483; Plants - 400; Viruses - 0; Other Eukaryotes - 906 (source: NCBI BLink).  protein_id AT4G05390.1p  transcript_id AT4G05390.1  protein_id AT4G05390.1p  transcript_id AT4G05390.1  
At4g05400	chr4:002741256	0.0	W/2741256-2742008	AT4G05400.1  CDS  gene_syn C6L9.80, C6L9_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21140.1); Has 31 Blast hits to 31 proteins in 12 species: Archae - 5; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G05400.1p  transcript_id AT4G05400.1  protein_id AT4G05400.1p  transcript_id AT4G05400.1  
At4g05400	chr4:002741256	0.0	W/2741256-2742008	AT4G05400.2  CDS  gene_syn C6L9.80, C6L9_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21140.1); Has 31 Blast hits to 31 proteins in 12 species: Archae - 5; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G05400.2p  transcript_id AT4G05400.2  protein_id AT4G05400.2p  transcript_id AT4G05400.2  
At4g05410	chr4:002745091	0.0	C/2745091-2745521,2744539-2744881,2744222-2744446,2743923-2744124,2743611-2743780,2743421-2743486,2743229-2743306	AT4G05410.1  CDS  gene_syn C6L9.90, C6L9_90  go_component nucleolus|GO:0005730|15496452|IDA  go_component anaphase-promoting complex|GO:0005680||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process mitochondrial fission|GO:0000266||ISS  go_function nucleotide binding|GO:0000166||ISS  go_function nucleic acid binding|GO:0003676||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: mitochondrial fission; LOCATED IN: nucleolus, small nucleolar ribonucleoprotein complex, anaphase-promoting complex, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: EMB2271 (EMBRYO DEFECTIVE 2271); nucleotide binding (TAIR:AT4G21130.1); Has 36165 Blast hits to 19140 proteins in 585 species: Archae - 40; Bacteria - 4252; Metazoa - 16125; Fungi - 6813; Plants - 3147; Viruses - 96; Other Eukaryotes - 5692 (source: NCBI BLink).  protein_id AT4G05410.1p  transcript_id AT4G05410.1  protein_id AT4G05410.1p  transcript_id AT4G05410.1  
At4g05420	chr4:002746288	0.0	W/2746288-2746391,2746859-2746907,2747043-2747102,2747190-2747281,2747727-2747778,2747913-2747975,2748111-2748160,2748327-2748402,2748697-2748906,2749032-2749138,2749233-2749341,2749606-2749806,2749893-2750108,2750234-2750344,2750499-2750774,2750877-2751151,2751262-2751610,2751705-2751989,2752082-2752663	AT4G05420.1  CDS  gene_syn C6L9.100, C6L9_100, DAMAGED DNA BINDING PROTEIN 1A, DDB1A  gene DDB1A  function Structurally similar to damaged DNA binding proteins.DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chromatin- repress transcription of genes involved in photomorphogenesis.  go_component nucleus|GO:0005634|12225661|IPI  go_component nucleus|GO:0005634|18552200|IDA  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|IPI  go_process negative regulation of photomorphogenesis|GO:0010100|12225661|IGI  go_process negative regulation of transcription|GO:0016481|12225661|IPI  go_function DNA binding|GO:0003677||ISS  go_function protein binding|GO:0005515|16844902|IPI  go_function protein binding|GO:0005515|18223036|IPI  product DDB1A (DAMAGED DNA BINDING PROTEIN 1A); DNA binding / protein binding  note DAMAGED DNA BINDING PROTEIN 1A (DDB1A); FUNCTIONS IN: protein binding, DNA binding; INVOLVED IN: negative regulation of transcription, negative regulation of photomorphogenesis; LOCATED IN: nucleus, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Cleavage and polyadenylation specificity factor, A subunit, C-terminal (InterPro:IPR004871); BEST Arabidopsis thaliana protein match is: DDB1B (Damaged DNA Binding Protein 1 B); damaged DNA binding / protein binding (TAIR:AT4G21100.1); Has 1108 Blast hits to 865 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 516; Fungi - 248; Plants - 129; Viruses - 0; Other Eukaryotes - 215 (source: NCBI BLink).  protein_id AT4G05420.1p  transcript_id AT4G05420.1  protein_id AT4G05420.1p  transcript_id AT4G05420.1  
At4g05420	chr4:002746288	0.0	W/2746288-2746391,2746859-2746907,2747043-2747102,2747190-2747281,2747727-2747778,2748111-2748160,2748327-2748402,2748697-2748906,2749032-2749138,2749233-2749341,2749606-2749806,2749893-2750108,2750234-2750344,2750499-2750774,2750877-2751151,2751262-2751610,2751705-2751989,2752082-2752663	AT4G05420.2  CDS  gene_syn C6L9.100, C6L9_100, DAMAGED DNA BINDING PROTEIN 1A, DDB1A  gene DDB1A  function Structurally similar to damaged DNA binding proteins.DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chromatin- repress transcription of genes involved in photomorphogenesis.  go_component nucleus|GO:0005634|12225661|IPI  go_component nucleus|GO:0005634|18552200|IDA  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|IPI  go_process negative regulation of photomorphogenesis|GO:0010100|12225661|IGI  go_process negative regulation of transcription|GO:0016481|12225661|IPI  go_function DNA binding|GO:0003677||ISS  go_function protein binding|GO:0005515|16844902|IPI  go_function protein binding|GO:0005515|18223036|IPI  product DDB1A (DAMAGED DNA BINDING PROTEIN 1A); DNA binding / protein binding  note DAMAGED DNA BINDING PROTEIN 1A (DDB1A); FUNCTIONS IN: protein binding, DNA binding; INVOLVED IN: negative regulation of transcription, negative regulation of photomorphogenesis; LOCATED IN: nucleus, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Cleavage and polyadenylation specificity factor, A subunit, C-terminal (InterPro:IPR004871); BEST Arabidopsis thaliana protein match is: DDB1B (Damaged DNA Binding Protein 1 B); damaged DNA binding / protein binding (TAIR:AT4G21100.1); Has 1097 Blast hits to 862 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 501; Fungi - 245; Plants - 129; Viruses - 0; Other Eukaryotes - 222 (source: NCBI BLink).  protein_id AT4G05420.2p  transcript_id AT4G05420.2  protein_id AT4G05420.2p  transcript_id AT4G05420.2  
At4g05430	chr4:002753582	0.0	W/2753582-2753882,2754088-2754118,2754225-2754324	AT4G05430.1  CDS  gene_syn C6L9.110, C6L9_110  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: glucan endo-1,3-beta-glucosidase-related (TAIR:AT1G09460.1); Has 776 Blast hits to 740 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 770; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G05430.1p  transcript_id AT4G05430.1  protein_id AT4G05430.1p  transcript_id AT4G05430.1  
At4g05440	chr4:002757274	0.0	W/2757274-2757870,2758076-2758117	AT4G05440.2  CDS  gene_syn C6L9.120, C6L9_120, EDA35, embryo sac development arrest 35  gene EDA35  go_component cellular_component|GO:0005575||ND  go_process polar nucleus fusion|GO:0010197|15634699|IMP  go_function molecular_function|GO:0003674||ND  product EDA35 (embryo sac development arrest 35)  note embryo sac development arrest 35 (EDA35); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: polar nucleus fusion; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: D123 (InterPro:IPR009772); Has 247 Blast hits to 245 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 107; Plants - 17; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT4G05440.2p  transcript_id AT4G05440.2  protein_id AT4G05440.2p  transcript_id AT4G05440.2  
At4g05440	chr4:002757274	0.0	W/2757274-2758275	AT4G05440.1  CDS  gene_syn C6L9.120, C6L9_120, EDA35, embryo sac development arrest 35  gene EDA35  go_component cellular_component|GO:0005575||ND  go_process polar nucleus fusion|GO:0010197|15634699|IMP  go_function molecular_function|GO:0003674||ND  product EDA35 (embryo sac development arrest 35)  note embryo sac development arrest 35 (EDA35); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: polar nucleus fusion; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cell division cycle, Cdc123 (InterPro:IPR016525), D123 (InterPro:IPR009772); Has 268 Blast hits to 266 proteins in 125 species: Archae - 0; Bacteria - 4; Metazoa - 95; Fungi - 107; Plants - 17; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT4G05440.1p  transcript_id AT4G05440.1  protein_id AT4G05440.1p  transcript_id AT4G05440.1  
At4g05450	chr4:002759048	0.0	W/2759048-2759105,2759306-2759373,2759789-2759901,2759979-2760085,2760215-2760264,2760339-2760421,2760520-2760634	AT4G05450.1  CDS  gene_syn C6L9.130, C6L9_130  go_function electron carrier activity|GO:0009055||IEA  go_function iron-sulfur cluster binding|GO:0051536||IEA  go_function 2 iron, 2 sulfur cluster binding|GO:0051537||IEA  go_process pollen tube development|GO:0048868|19237690|IMP  go_function electron carrier activity|GO:0009055||ISS  product adrenodoxin-like ferredoxin 2  note adrenodoxin-like ferredoxin 2; FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding; INVOLVED IN: pollen tube development; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041), Adrenodoxin (InterPro:IPR001055), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), Adrenodoxin, iron-sulphur binding site (InterPro:IPR018298); BEST Arabidopsis thaliana protein match is: adrenodoxin-like ferredoxin 1 (TAIR:AT4G21090.3); Has 3455 Blast hits to 3455 proteins in 760 species: Archae - 0; Bacteria - 1368; Metazoa - 220; Fungi - 90; Plants - 51; Viruses - 0; Other Eukaryotes - 1726 (source: NCBI BLink).  protein_id AT4G05450.1p  transcript_id AT4G05450.1  protein_id AT4G05450.1p  transcript_id AT4G05450.1  
At4g05460	chr4:002762063	0.0	C/2762063-2762400,2761106-2761676	AT4G05460.1  CDS  gene_syn C6L9.140, C6L9_140  go_component chloroplast|GO:0009507||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product F-box family protein (FBL20)  note F-box family protein (FBL20); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (FBL22) (TAIR:AT4G05490.1); Has 1604 Blast hits to 1357 proteins in 102 species: Archae - 0; Bacteria - 79; Metazoa - 945; Fungi - 61; Plants - 449; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT4G05460.1p  transcript_id AT4G05460.1  protein_id AT4G05460.1p  transcript_id AT4G05460.1  
At4g05470	chr4:002767566	0.0	C/2767566-2767957,2765995-2766499,2764939-2765270,2763256-2763757	AT4G05470.1  CDS  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product F-box family protein (FBL21)  note F-box family protein (FBL21); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: F-box family protein (FBL22) (TAIR:AT4G05490.1); Has 1110 Blast hits to 688 proteins in 79 species: Archae - 0; Bacteria - 2; Metazoa - 498; Fungi - 32; Plants - 539; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT4G05470.1p  transcript_id AT4G05470.1  protein_id AT4G05470.1p  transcript_id AT4G05470.1  
At4g05490	chr4:002771888	0.0	C/2771888-2772252,2771044-2771602	AT4G05490.1  CDS  gene_syn C6L9.170, C6L9_170  go_component chloroplast|GO:0009507||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product F-box family protein (FBL22)  note F-box family protein (FBL22); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (FBL20) (TAIR:AT4G05460.1); Has 664 Blast hits to 638 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 297; Fungi - 37; Plants - 300; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT4G05490.1p  transcript_id AT4G05490.1  protein_id AT4G05490.1p  transcript_id AT4G05490.1  
At4g05494	chr4:002776207	0.0	C/2776207-2776365	AT4G05494.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G05494.1p  transcript_id AT4G05494.1  protein_id AT4G05494.1p  transcript_id AT4G05494.1  
At4g05495	chr4:002776689	0.0	C/2776689-2777150	AT4G05495.1  pseudogenic_transcript  pseudo  note D123 -related protein, pseudogene, temporary automated functional assignment; blastp match of 40% identity and 1.5e-14 P-value to GP|28829467|gb|AAO52005.1||AC116988 similar to Homo sapiens (Human). HT-1080 protein (D123 gene product) (Hypothetical protein) {Dictyostelium discoideum}  
At4g05497	chr4:002778449	0.0	C/2778449-2778801,2777903-2778290	AT4G05497.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (FBL20) (TAIR:AT4G05460.1); Has 1278 Blast hits to 1055 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 707; Fungi - 114; Plants - 402; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT4G05497.1p  transcript_id AT4G05497.1  protein_id AT4G05497.1p  transcript_id AT4G05497.1  
At4g05500	chr4:002780170	0.0	C/2780170-2782675	AT4G05500.1  pseudogenic_transcript  pseudo  gene_syn T1J24.2, T1J24_2  note pseudogene, F-box protein family, AtFBL9/AtFBL23, contains similarity to N7 protein GI:3273101 from (Medicago truncatula); blastp match of 39% identity and 1.6e-34 P-value to GP|3273101|emb|CAA76808.1||Y17613 N7 protein {Medicago truncatula}  
At4g05502	chr4:002783273	0.0	C/2783273-2785276	AT4G05502.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 2.5e-53 P-value blast match to Q9ZQK9 /304-464 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g05505	chr4:002785708	0.0	W/2785708-2787991	AT4G05505.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 1.2e-35 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At4g05508	chr4:002789656	0.0	C/2789656-2789741	AT4G05508.1  miRNA  gene_syn MICRORNA405D, MIR405D  gene MIR405D  function Encodes a microRNA. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence:ATGAGTTGGGTCTAACCCATAACT  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR405D (MICRORNA405D); miRNA  transcript_id AT4G05508.1  
At4g05510	chr4:002790193	0.0	C/2790193-2792321	AT4G05510.1  mRNA_TE_gene  pseudo  gene_syn T1J24.3, T1J24_3  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 4.0e-144 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At4g05520	chr4:002804522	0.0	W/2804522-2804609,2804701-2804780,2804921-2804989,2805073-2805130,2805237-2805292,2805380-2805422,2805518-2805579,2805675-2805785,2805923-2806025,2806114-2806163,2806260-2806388,2806474-2806725,2806806-2806885,2806998-2807124,2807210-2807353,2807645-2807833	AT4G05520.1  CDS  gene_syn ATEHD2, EPS15 HOMOLOGY DOMAIN 2, T1J24.10, T1J24_10  gene ATEHD2  function Encodes AtEHD2, one of the Arabidopsis Eps15 homology domain proteins involved in endocytosis (AtEHD1, At3g20290).  go_function GTPase activity|GO:0003924||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function GTP binding|GO:0005525||IEA  go_component cytoplasm|GO:0005737|18547399|IDA  go_component microsome|GO:0005792|18547399|IDA  go_component plasma membrane|GO:0005886|18547399|IDA  go_component membrane|GO:0016020|18547399|IDA  go_process endocytosis|GO:0006897|18547399|IMP  go_function calcium ion binding|GO:0005509||ISS  product ATEHD2 (EPS15 HOMOLOGY DOMAIN 2); GTP binding / GTPase/ calcium ion binding  note EPS15 HOMOLOGY DOMAIN 2 (ATEHD2); FUNCTIONS IN: GTP binding, GTPase activity, calcium ion binding; INVOLVED IN: endocytosis; LOCATED IN: plasma membrane, microsome, membrane, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EPS15 homology (EH) (InterPro:IPR000261), Dynamin, GTPase region (InterPro:IPR001401), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: ATEHD1 (EPS15 HOMOLOGY DOMAIN 1); GTP binding / GTPase/ calcium ion binding (TAIR:AT3G20290.2); Has 2099 Blast hits to 1379 proteins in 187 species: Archae - 0; Bacteria - 39; Metazoa - 1462; Fungi - 284; Plants - 114; Viruses - 0; Other Eukaryotes - 200 (source: NCBI BLink).  protein_id AT4G05520.1p  transcript_id AT4G05520.1  protein_id AT4G05520.1p  transcript_id AT4G05520.1  
At4g05520	chr4:002804522	0.0	W/2804522-2804609,2804701-2804780,2804921-2804989,2805073-2805130,2805237-2805292,2805380-2805422,2805521-2805579,2805675-2805785,2805923-2806025,2806114-2806163,2806260-2806388,2806474-2806725,2806806-2806885,2806998-2807124,2807210-2807353,2807645-2807833	AT4G05520.2  CDS  gene_syn ATEHD2, EPS15 HOMOLOGY DOMAIN 2, T1J24.10, T1J24_10  gene ATEHD2  function Encodes AtEHD2, one of the Arabidopsis Eps15 homology domain proteins involved in endocytosis (AtEHD1, At3g20290).  go_function GTPase activity|GO:0003924||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function GTP binding|GO:0005525||IEA  go_component cytoplasm|GO:0005737|18547399|IDA  go_component microsome|GO:0005792|18547399|IDA  go_component plasma membrane|GO:0005886|18547399|IDA  go_component membrane|GO:0016020|18547399|IDA  go_process endocytosis|GO:0006897|18547399|IMP  go_function calcium ion binding|GO:0005509||ISS  product ATEHD2 (EPS15 HOMOLOGY DOMAIN 2); GTP binding / GTPase/ calcium ion binding  note EPS15 HOMOLOGY DOMAIN 2 (ATEHD2); FUNCTIONS IN: GTP binding, GTPase activity, calcium ion binding; INVOLVED IN: endocytosis; LOCATED IN: plasma membrane, microsome, membrane, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EPS15 homology (EH) (InterPro:IPR000261), Dynamin, GTPase region (InterPro:IPR001401), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: ATEHD1 (EPS15 HOMOLOGY DOMAIN 1); GTP binding / GTPase/ calcium ion binding (TAIR:AT3G20290.2); Has 2099 Blast hits to 1382 proteins in 187 species: Archae - 0; Bacteria - 39; Metazoa - 1463; Fungi - 283; Plants - 114; Viruses - 0; Other Eukaryotes - 200 (source: NCBI BLink).  protein_id AT4G05520.2p  transcript_id AT4G05520.2  protein_id AT4G05520.2p  transcript_id AT4G05520.2  
At4g05523	chr4:002808680	0.0	C/2808680-2809025,2808220-2808466,2808054-2808126	AT4G05523.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: emb1745 (embryo defective 1745) (TAIR:AT1G13120.1); Has 39 Blast hits to 39 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 18; Plants - 13; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G05523.1p  transcript_id AT4G05523.1  protein_id AT4G05523.1p  transcript_id AT4G05523.1  
At4g05526	chr4:002811266	0.0	W/2811266-2814539	AT4G05526.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to OSJNBb0043H09.1, similar to En/Spm-like transposon protein, putative; blastp match of 48% identity and 8.1e-37 P-value to GP|21740634|emb|CAD40195.1||AL606611 OSJNBb0043H09.1 {Oryza sativa (japonica cultivar-group)}  
At4g05530	chr4:002816462	0.0	W/2816462-2816596,2816988-2817104,2817291-2817425,2817522-2817647,2817728-2817829,2817925-2818074	AT4G05530.1  CDS  gene_syn IBR1, INCREASED BOTRYTIS RESISTANCE 1, INDOLE-3-BUTYRIC ACID RESPONSE 1, SDRA, SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, T1J24.9, T1J24_9  gene IBR1  function Encodes a peroxisomal member of the short-chain dehydrogenase/reductase (SDR) family of enzymes. Loss of IBR1 function causes increased resistance to indole-3-butyric acid without affecting plant responses to IAA, NAA, and 2,4-D. This enzyme may be responsible for catalyzing a dehydrogenation step in the beta-oxidation-like conversion of IBA to IAA.  go_component peroxisome|GO:0005777|17951448|IDA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component peroxisome|GO:0005777|19043666|IDA  go_process indolebutyric acid metabolic process|GO:0080024|18725356|IMP  go_process response to indolebutyric acid stimulus|GO:0080026|18725356|IMP  go_function oxidoreductase activity|GO:0016491||ISS  product IBR1 (INDOLE-3-BUTYRIC ACID RESPONSE 1); binding / catalytic/ oxidoreductase  note INDOLE-3-BUTYRIC ACID RESPONSE 1 (IBR1); FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: indolebutyric acid metabolic process, response to indolebutyric acid stimulus; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: tropinone reductase, putative / tropine dehydrogenase, putative (TAIR:AT2G29150.1); Has 76520 Blast hits to 76377 proteins in 2166 species: Archae - 459; Bacteria - 42330; Metazoa - 3676; Fungi - 3727; Plants - 1467; Viruses - 5; Other Eukaryotes - 24856 (source: NCBI BLink).  protein_id AT4G05530.1p  transcript_id AT4G05530.1  protein_id AT4G05530.1p  transcript_id AT4G05530.1  
At4g05540	chr4:002820811	0.0	C/2820811-2821065,2819567-2820736,2819174-2819498,2818776-2819095	AT4G05540.1  CDS  gene_syn T1J24.4, T1J24_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product tRNA-splicing endonuclease positive effector-related  note tRNA-splicing endonuclease positive effector-related; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G37150.1); Has 4042 Blast hits to 3452 proteins in 580 species: Archae - 125; Bacteria - 775; Metazoa - 1205; Fungi - 801; Plants - 318; Viruses - 74; Other Eukaryotes - 744 (source: NCBI BLink).  protein_id AT4G05540.1p  transcript_id AT4G05540.1  protein_id AT4G05540.1p  transcript_id AT4G05540.1  
At4g05550	chr4:002822778	0.0	W/2822778-2824358	AT4G05550.1  mRNA_TE_gene  pseudo  gene_syn T1J24.8, T1J24_8  note Transposable element gene, Mutator-like transposase family, has a 4.9e-80 P-value blast match to Q9S9W4 /247-408 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g05553	chr4:002826047	0.0	W/2826047-2826103,2826177-2826302,2826507-2826659	AT4G05553.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc knuckle (CCHC-type) family protein  note zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 14 Blast hits to 12 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G05553.1p  transcript_id AT4G05553.1  protein_id AT4G05553.1p  transcript_id AT4G05553.1  
At4g05556	chr4:002831749	0.0	W/2831749-2836347	AT4G05556.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.2e-223 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g05560	chr4:002838007	0.0	W/2838007-2838401	AT4G05560.1  mRNA_TE_gene  pseudo  gene_syn T1J24.7, T1J24_7  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42254.1)  
At4g05570	chr4:002839612	0.0	C/2839612-2840637	AT4G05570.1  mRNA_TE_gene  pseudo  gene_syn T1J24.5, T1J24_5  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42460.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At4g05580	chr4:002841648	0.0	W/2841648-2841998	AT4G05580.1  mRNA_TE_gene  pseudo  gene_syn T1J24.6, T1J24_6  note Transposable element gene, similar to zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana] (TAIR:AT1G42630.1)  
At4g05575	chr4:002844609	0.0	C/2844609-2845016	AT4G05575.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G30520; unknown protein  
At4g05581	chr4:002848965	0.0	C/2848965-2849790	AT4G05581.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G03970.1)  
At4g05582	chr4:002850479	0.0	W/2850479-2855344	AT4G05582.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 8.2e-76 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At4g05583	chr4:002860476	0.0	W/2860476-2861486	AT4G05583.2  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 1.9e-48 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g05584	chr4:002864901	0.0	W/2864901-2865581	AT4G05584.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 3.8e-50 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g05585	chr4:002867197	0.0	C/2867197-2876145	AT4G05585.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 4.1e-315 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At4g05586	chr4:002878743	0.0	W/2878743-2884410	AT4G05586.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.3e-222 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g05587	chr4:002886455	0.0	W/2886455-2888488	AT4G05587.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to putative Athila retroelement ORF2  
At4g05588	chr4:002890234	0.0	W/2890234-2891139	AT4G05588.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to contains similarity to Arabidopsis thaliana hypothetical protein (GB:AC004483)  
At4g05589	chr4:002892290	0.0	W/2892290-2895196	AT4G05589.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 5.7e-295 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g05591	chr4:002896376	0.0	W/2896376-2898502	AT4G05591.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to Athila retroelement ORF2, putative  
At4g05592	chr4:002899554	0.0	C/2899554-2900899	AT4G05592.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.7e-43 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At4g05593	chr4:002901388	0.0	W/2901388-2903415	AT4G05593.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 4.9e-10 P-value blast match to GB:226407 retrotransposon del1-46 (Gypsy_Ty3-element) (Lilium henryi)  
At4g05594	chr4:002903653	0.0	C/2903653-2904114	AT4G05594.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 3.4e-08 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At4g05590	chr4:002907176	0.0	W/2907176-2907230,2907632-2907730,2907845-2907897,2908017-2908090,2908252-2908297	AT4G05590.1  CDS  gene_syn F6H8.10, F6H8_10  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0041 (InterPro:IPR005336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22310.1); Has 609 Blast hits to 609 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 297; Fungi - 164; Plants - 96; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT4G05590.1p  transcript_id AT4G05590.1  protein_id AT4G05590.1p  transcript_id AT4G05590.1  
At4g05590	chr4:002907176	0.0	W/2907176-2907230,2907632-2907897,2908017-2908090,2908252-2908297	AT4G05590.2  CDS  gene_syn F6H8.10, F6H8_10  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0041 (InterPro:IPR005336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22310.1); Has 400 Blast hits to 400 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 164; Fungi - 102; Plants - 96; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT4G05590.2p  transcript_id AT4G05590.2  protein_id AT4G05590.2p  transcript_id AT4G05590.2  
At4g05595	chr4:002910711	0.0	C/2910711-2912641	AT4G05595.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 7.6e-125 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays)  
At4g05597	chr4:002914567	0.0	C/2914567-2915946	AT4G05597.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to putative retroelement pol polyprotein  
At4g05600	chr4:002916389	0.0	W/2916389-2917177	AT4G05600.1  mRNA_TE_gene  pseudo  gene_syn F6H8.20, F6H8_20  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.6e-10 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g05610	chr4:002918153	0.0	W/2918153-2919196	AT4G05610.1  mRNA_TE_gene  pseudo  gene_syn F6H8.30, F6H8_30  note Transposable element gene, pseudogene, hypothetical protein, putative retrotransposon-like orf - Arabidopsis thaliana,PID:g4309868  
At4g05612	chr4:002959094	0.0	W/2959094-2959142,2959422-2959490,2959546-2959668,2959956-2960004,2960134-2960177,2960312-2960380,2960668-2960736,2960843-2960914,2961024-2961092,2961558-2961626,2961736-2961804,2962269-2962337,2962447-2962515,2962625-2962693,2962981-2963049,2963159-2963227,2963337-2963405,2963515-2963583,2963692-2963744	AT4G05612.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G08986.1).  protein_id AT4G05612.1p  transcript_id AT4G05612.1  protein_id AT4G05612.1p  transcript_id AT4G05612.1  
At4g05612	chr4:002959094	0.0	W/2959094-2959142,2959600-2959668,2959956-2960004,2960134-2960177,2960312-2960380,2960668-2960736,2960843-2960914,2961024-2961092,2961558-2961626,2961736-2961804,2962269-2962337,2962447-2962515,2962625-2962693,2962981-2963049,2963159-2963227,2963337-2963405,2963515-2963583,2963692-2963744	AT4G05612.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G08986.1).  protein_id AT4G05612.2p  transcript_id AT4G05612.2  protein_id AT4G05612.2p  transcript_id AT4G05612.2  
At4g05613	chr4:002972191	0.0	C/2972191-2975280	AT4G05613.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.0e-266 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g05616	chr4:002982096	0.0	C/2982096-2983691	AT4G05616.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G04155.1); contains domain GAG/POL/ENV POLYPROTEIN (PTHR10178); contains domain POL POLYPROTEIN-RELATED (PTHR10178:SF19)  
At4g05620	chr4:002985051	0.0	C/2985051-2985449	AT4G05620.1  CDS  gene_syn F21I2.10, F21I2_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G39600.1); Has 315 Blast hits to 307 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 315; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G05620.1p  transcript_id AT4G05620.1  protein_id AT4G05620.1p  transcript_id AT4G05620.1  
At4g05630	chr4:002988448	0.0	C/2988448-2988822	AT4G05630.1  CDS  gene_syn F21I2.20, F21I2_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12617.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G05630.1p  transcript_id AT4G05630.1  protein_id AT4G05630.1p  transcript_id AT4G05630.1  
At4g05631	chr4:002992568	0.0	C/2992568-2992618,2992392-2992514,2992139-2992310,2991942-2992024,2991856-2991869,2991755-2991780,2991611-2991672,2991111-2991212,2990570-2990635,2990006-2990188	AT4G05631.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G05631.1p  transcript_id AT4G05631.1  protein_id AT4G05631.1p  transcript_id AT4G05631.1  
At4g05635	chr4:002995427	0.0	W/2995427-2999908	AT4G05635.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.6e-58 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g05632	chr4:003001664	0.0	W/3001664-3001954,3002109-3002411	AT4G05632.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G05632.1p  transcript_id AT4G05632.1  protein_id AT4G05632.1p  transcript_id AT4G05632.1  
At4g05633	chr4:003002439	0.0	C/3002439-3004435	AT4G05633.1  mRNA_TE_gene  pseudo  note Transposable element gene, contains InterPro domain Arabidopsis retrotransposon ORF-1 protein; (InterPro:IPR004312)  
At4g05634	chr4:003004796	0.0	C/3004796-3007460	AT4G05634.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.9e-123 P-value blast match to gb|AAL06422.1|AF378081_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At4g05636	chr4:003013278	0.0	W/3013278-3013859	AT4G05636.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32161.1)  
At4g05638	chr4:003015180	0.0	W/3015180-3021314	AT4G05638.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.2e-249 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g05640	chr4:003022684	0.0	W/3022684-3023685	AT4G05640.1  mRNA_TE_gene  pseudo  gene_syn F21I2.30, F21I2_30  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G41855.1)  
At4g05918	chr4:003031727	0.0	W/3031727-3033391	AT4G05918.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.7e-30 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06196	chr4:003036286	0.0	C/3036286-3037404	AT4G06196.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 1.4e-76 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At4g06474	chr4:003051195	0.0	C/3051195-3052774	AT4G06474.1  mRNA_TE_gene  pseudo  note Transposable element gene, retroelement pol polyprotein  
At4g06477	chr4:003060975	0.0	C/3060975-3065294	AT4G06477.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 2.1e-112 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At4g06479	chr4:003067503	0.0	W/3067503-3067817,3067847-3067981,3068107-3068769	AT4G06479.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product nucleic acid binding / zinc ion binding  note nucleic acid binding / zinc ion binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: nucleic acid binding / zinc ion binding (TAIR:AT4G06526.1); Has 17 Blast hits to 17 proteins in 7 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT4G06479.1p  transcript_id AT4G06479.1  protein_id AT4G06479.1p  transcript_id AT4G06479.1  
At4g06480	chr4:003070996	0.0	C/3070996-3071793	AT4G06480.2  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06481	chr4:003076291	0.0	C/3076291-3078048	AT4G06481.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, contains Pfam domain PF03078: ATHILA ORF-1 family  
At4g06482	chr4:003079363	0.0	C/3079363-3082326	AT4G06482.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.7e-180 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06483	chr4:003085805	0.0	W/3085805-3087256	AT4G06483.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.2e-19 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06484	chr4:003087919	0.0	C/3087919-3088878	AT4G06484.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06485	chr4:003090240	0.0	C/3090240-3095924	AT4G06485.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.0e-252 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06486	chr4:003097050	0.0	C/3097050-3097784	AT4G06486.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06487	chr4:003099364	0.0	W/3099364-3105303	AT4G06487.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.9e-23 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06488	chr4:003106390	0.0	C/3106390-3111312	AT4G06488.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 3.5e-167 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At4g06489	chr4:003115943	0.0	W/3115943-3116611	AT4G06489.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At4g06490	chr4:003116894	0.0	W/3116894-3117334	AT4G06490.1  CDS  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G29050.1); Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G06490.1p  transcript_id AT4G06490.1  protein_id AT4G06490.1p  transcript_id AT4G06490.1  
At4g06491	chr4:003117591	0.0	C/3117591-3123099	AT4G06491.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 5.4e-214 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At4g06492	chr4:003127205	0.0	W/3127205-3128059	AT4G06492.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06493	chr4:003129015	0.0	C/3129015-3131234	AT4G06493.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to putative reverse transcriptase, similar to putative non-LTR retroelement reverse transcript GP:4432866 (Arabidopsis thaliana); blastp match of 35% identity and 2.0e-28 P-value to GP|27311287|gb|AAO00713.1||AC078894 putative reverse transcriptase {Oryza sativa (japonica cultivar-group)}  
At4g06494	chr4:003133152	0.0	C/3133152-3133586	AT4G06494.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, contains Pfam domain PF03778: Protein of unknown function (DUF321)  
At4g06495	chr4:003133802	0.0	W/3133802-3135016	AT4G06495.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06496	chr4:003136680	0.0	W/3136680-3137837	AT4G06496.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06497	chr4:003138929	0.0	C/3138929-3144238	AT4G06497.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 5.0e-48 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)  
At4g06498	chr4:003145693	0.0	W/3145693-3147708	AT4G06498.1  pseudogenic_transcript  pseudo  note pseudogene, vacuolar sorting receptor -related, similar to BP-80 vacuolar sorting receptor GP:1737222 {Pisum sativum}; blastp match of 78% identity and 8.8e-70 P-value to GP|1737222|gb|AAB72110.1||U79958 BP-80 vacuolar sorting receptor {Pisum sativum}  
At4g06499	chr4:003154644	0.0	C/3154644-3158594	AT4G06499.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 6.1e-26 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06500	chr4:003160062	0.0	W/3160062-3165128	AT4G06500.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, Ulp1 protease family, contains Pfam PF02902: Ulp1 protease family, C-terminal catalytic domain; similar to putative retroelement pol polyprotein (GP:4309763) {Arabidopsis thaliana}  
At4g06501	chr4:003165660	0.0	C/3165660-3166748	AT4G06501.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06502	chr4:003167242	0.0	W/3167242-3168199	AT4G06502.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, contains Pfam domain PF02721: Domain of unknown function DUF223  
At4g06503	chr4:003168783	0.0	C/3168783-3170879	AT4G06503.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 2.2e-53 P-value blast match to O22273 /233-373 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g06504	chr4:003171711	0.0	W/3171711-3173348	AT4G06504.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 1.5e-102 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At4g06505	chr4:003174260	0.0	C/3174260-3174880	AT4G06505.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06506	chr4:003176647	0.0	C/3176647-3182340	AT4G06506.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.1e-255 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06507	chr4:003183480	0.0	C/3183480-3184133	AT4G06507.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06508	chr4:003184179	0.0	W/3184179-3185642	AT4G06508.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 1.5e-72 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At4g06509	chr4:003186651	0.0	W/3186651-3190088	AT4G06509.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 2.0e-27 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At4g06510	chr4:003191800	0.0	W/3191800-3194253	AT4G06510.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.3e-15 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At4g06511	chr4:003263286	0.0	W/3263286-3264419	AT4G06511.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06512	chr4:003265497	0.0	C/3265497-3266252	AT4G06512.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.1e-29 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06513	chr4:003269615	0.0	C/3269615-3270112	AT4G06513.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06514	chr4:003270839	0.0	W/3270839-3273054	AT4G06514.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 9.4e-226 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06515	chr4:003273217	0.0	C/3273217-3273969	AT4G06515.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06586	chr4:003274439	0.0	W/3274439-3275037	AT4G06586.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06516	chr4:003276379	0.0	W/3276379-3279171	AT4G06516.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 0. P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06517	chr4:003280501	0.0	W/3280501-3282444	AT4G06517.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06615	chr4:003283784	0.0	W/3283784-3284823	AT4G06615.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06518	chr4:003285704	0.0	C/3285704-3287791	AT4G06518.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06519	chr4:003288056	0.0	C/3288056-3289993	AT4G06519.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.4e-41 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06520	chr4:003291150	0.0	C/3291150-3291377	AT4G06520.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06521	chr4:003292569	0.0	C/3292569-3293600	AT4G06521.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.8e-23 P-value blast match to GB:NP_038604 L1 repeat, Tf subfamily, member 26 (LINE-element) (Mus musculus)  
At4g06522	chr4:003294501	0.0	C/3294501-3299084	AT4G06522.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.2e-22 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At4g06617	chr4:003301605	0.0	C/3301605-3302193	AT4G06617.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 6.2e-37 P-value blast match to At5g59620.1/14-257 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At4g06523	chr4:003302313	0.0	W/3302313-3305957	AT4G06523.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 9.1e-36 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)  
At4g06619	chr4:003306171	0.0	C/3306171-3306491	AT4G06619.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 1.0e-28 P-value blast match to At5g59620.1/14-257 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At4g06524	chr4:003310414	0.0	C/3310414-3312940	AT4G06524.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 9.9e-264 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06525	chr4:003313836	0.0	C/3313836-3316544	AT4G06525.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 5.8e-68 P-value blast match to GB:AAD12998 pol polyprotein (Ty1_Copia-element) (Zea mays)  
At4g06526	chr4:003320846	0.0	C/3320846-3320945,3320321-3320747,3320078-3320149,3319531-3320019,3319028-3319087,3318744-3318917,3318546-3318704,3318302-3318341	AT4G06526.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding / zinc ion binding  note nucleic acid binding / zinc ion binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G31950.1); Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 4; Plants - 5; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G06526.1p  transcript_id AT4G06526.1  protein_id AT4G06526.1p  transcript_id AT4G06526.1  
At4g06527	chr4:003322816	0.0	C/3322816-3326895	AT4G06527.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.3e-72 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At4g06528	chr4:003327079	0.0	W/3327079-3330294	AT4G06528.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp1/En/Spm), has a 3.4e-78 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)  
At4g06529	chr4:003336339	0.0	W/3336339-3342143	AT4G06529.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 6.7e-246 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At4g06530	chr4:003345854	0.0	C/3345854-3346456	AT4G06530.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06531	chr4:003348062	0.0	C/3348062-3348619	AT4G06531.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06532	chr4:003350166	0.0	C/3350166-3352838	AT4G06532.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.0e-268 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06533	chr4:003354039	0.0	C/3354039-3354641	AT4G06533.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06534	chr4:003356870	0.0	W/3356870-3358087	AT4G06534.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 8 Blast hits to 8 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G06534.1p  transcript_id AT4G06534.1  protein_id AT4G06534.1p  transcript_id AT4G06534.1  
At4g06535	chr4:003359448	0.0	W/3359448-3360128	AT4G06535.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06536	chr4:003360746	0.0	W/3360746-3361255	AT4G06536.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: B302 (SPRY)-like (InterPro:IPR001870), SPla/RYanodine receptor SPRY (InterPro:IPR003877); Has 20 Blast hits to 20 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 7; Plants - 11; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G06536.1p  transcript_id AT4G06536.1  protein_id AT4G06536.1p  transcript_id AT4G06536.1  
At4g06537	chr4:003363788	0.0	W/3363788-3365341	AT4G06537.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.5e-20 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06538	chr4:003366037	0.0	C/3366037-3368502	AT4G06538.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06539	chr4:003371977	0.0	C/3371977-3374649	AT4G06539.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.6e-174 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06540	chr4:003374741	0.0	W/3374741-3378235	AT4G06540.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 9.5e-89 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06541	chr4:003378994	0.0	W/3378994-3379379	AT4G06541.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06542	chr4:003379397	0.0	C/3379397-3380776	AT4G06542.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06543	chr4:003381883	0.0	C/3381883-3383463	AT4G06543.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.1e-132 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06544	chr4:003384113	0.0	W/3384113-3385926	AT4G06544.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06545	chr4:003389188	0.0	C/3389188-3390433	AT4G06545.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.3e-127 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06621	chr4:003391521	0.0	C/3391521-3392717	AT4G06621.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06623	chr4:003392802	0.0	W/3392802-3393575	AT4G06623.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06546	chr4:003396231	0.0	C/3396231-3403881	AT4G06546.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.4e-161 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At4g06547	chr4:003404979	0.0	W/3404979-3407879	AT4G06547.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.1e-14 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06548	chr4:003418263	0.0	W/3418263-3421997	AT4G06548.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 2.5e-39 P-value blast match to Q9SJR8 /172-333 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g06549	chr4:003422873	0.0	C/3422873-3426337	AT4G06549.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, temporary gene name assignment  
At4g06550	chr4:003433104	0.0	W/3433104-3438960	AT4G06550.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 9.8e-107 P-value blast match to gb|AAL06420.1|AF378078_1 reverse transcriptase (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At4g06551	chr4:003443530	0.0	W/3443530-3445107	AT4G06551.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06552	chr4:003445391	0.0	C/3445391-3448714	AT4G06552.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 8.6e-69 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g06553	chr4:003449949	0.0	C/3449949-3452669	AT4G06553.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 3.2e-21 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At4g06554	chr4:003457793	0.0	W/3457793-3463732	AT4G06554.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 5.1e-211 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06555	chr4:003464128	0.0	W/3464128-3466017	AT4G06555.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06556	chr4:003469500	0.0	W/3469500-3475244	AT4G06556.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 3.3e-152 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At4g06557	chr4:003476600	0.0	C/3476600-3479077	AT4G06557.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 6.5e-16 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays)  
At4g06558	chr4:003479355	0.0	W/3479355-3481490	AT4G06558.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp1/En/Spm), has a 1.4e-83 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)  
At4g06559	chr4:003482500	0.0	C/3482500-3484512	AT4G06559.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.7e-117 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus)  
At4g06560	chr4:003485955	0.0	C/3485955-3488228	AT4G06560.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06561	chr4:003488537	0.0	C/3488537-3490597	AT4G06561.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.4e-80 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06562	chr4:003493210	0.0	W/3493210-3494235	AT4G06562.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.9e-144 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06563	chr4:003494245	0.0	C/3494245-3496224	AT4G06563.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.0e-227 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06564	chr4:003497432	0.0	C/3497432-3499171	AT4G06564.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.5e-114 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06565	chr4:003499292	0.0	W/3499292-3501241	AT4G06565.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06566	chr4:003503598	0.0	C/3503598-3508199	AT4G06566.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 9.9e-101 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At4g06567	chr4:003509751	0.0	W/3509751-3511385	AT4G06567.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 1.2e-85 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At4g06568	chr4:003512136	0.0	C/3512136-3513542	AT4G06568.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 1.1e-22 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At4g06569	chr4:003514355	0.0	C/3514355-3516778	AT4G06569.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 1.2e-59 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)  
At4g06570	chr4:003518688	0.0	W/3518688-3520916	AT4G06570.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 4.3e-26 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At4g06639	chr4:003523684	0.0	C/3523684-3523937,3523431-3523548	AT4G06639.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT4G06639.1p  transcript_id AT4G06639.1  protein_id AT4G06639.1p  transcript_id AT4G06639.1  
At4g06637	chr4:003526422	0.0	W/3526422-3526831	AT4G06637.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07523.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G27180.1)  
At4g06571	chr4:003527427	0.0	C/3527427-3529997	AT4G06571.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06572	chr4:003531602	0.0	C/3531602-3534841	AT4G06572.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 1.4e-68 P-value blast match to O22278 /203-375 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g06573	chr4:003539458	0.0	C/3539458-3541365	AT4G06573.1  mRNA_TE_gene  pseudo  note Transposable element gene, Athila retroelement ORF1 protein  
At4g06574	chr4:003542462	0.0	C/3542462-3546124	AT4G06574.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 9.3e-274 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06575	chr4:003546466	0.0	C/3546466-3547080	AT4G06575.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06576	chr4:003547763	0.0	W/3547763-3549640	AT4G06576.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.5e-174 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06577	chr4:003550079	0.0	C/3550079-3550588	AT4G06577.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.7e-38 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06578	chr4:003550656	0.0	W/3550656-3554459	AT4G06578.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.2e-127 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At4g06579	chr4:003556015	0.0	C/3556015-3558993	AT4G06579.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, temporary gene name assignment  
At4g06580	chr4:003565563	0.0	C/3565563-3567242	AT4G06580.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06581	chr4:003567341	0.0	W/3567341-3571708	AT4G06581.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 5.7e-64 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06582	chr4:003572990	0.0	W/3572990-3575539	AT4G06582.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At4g06583	chr4:003576159	0.0	W/3576159-3576317,3576384-3576509	AT4G06583.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G32160.1).  protein_id AT4G06583.2p  transcript_id AT4G06583.2  protein_id AT4G06583.2p  transcript_id AT4G06583.2  
At4g06583	chr4:003576159	0.0	W/3576159-3576317,3576440-3576529	AT4G06583.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G32160.1).  protein_id AT4G06583.1p  transcript_id AT4G06583.1  protein_id AT4G06583.1p  transcript_id AT4G06583.1  
At4g06584	chr4:003577064	0.0	C/3577064-3583225	AT4G06584.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.9e-239 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At4g06585	chr4:003584020	0.0	C/3584020-3588532	AT4G06585.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.8e-06 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06587	chr4:003594144	0.0	C/3594144-3597062	AT4G06587.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.4e-06 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06588	chr4:003598434	0.0	W/3598434-3603301	AT4G06588.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 1.0e-130 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At4g06625	chr4:003603870	0.0	C/3603870-3604889	AT4G06625.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 6.8e-63 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06627	chr4:003604916	0.0	W/3604916-3606209	AT4G06627.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 1.2e-42 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At4g06589	chr4:003606644	0.0	C/3606644-3611806	AT4G06589.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 6.7e-95 P-value blast match to gb|AAL06419.1|AF378075_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At4g06629	chr4:003614018	0.0	W/3614018-3614826	AT4G06629.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 2.6e-12 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At4g06631	chr4:003616619	0.0	C/3616619-3617357	AT4G06631.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06590	chr4:003618926	0.0	C/3618926-3621115	AT4G06590.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06591	chr4:003621939	0.0	W/3621939-3626273	AT4G06591.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 2.1e-121 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At4g06592	chr4:003627035	0.0	C/3627035-3629397	AT4G06592.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06593	chr4:003630264	0.0	C/3630264-3636212	AT4G06593.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.9e-187 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06633	chr4:003637063	0.0	C/3637063-3637789	AT4G06633.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06594	chr4:003638798	0.0	W/3638798-3643477	AT4G06594.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 5.1e-215 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At4g06595	chr4:003644185	0.0	W/3644185-3646515	AT4G06595.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 5.3e-49 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At4g06596	chr4:003646551	0.0	C/3646551-3648116	AT4G06596.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 9.7e-05 P-value blast match to GB:AAA98435 POL3 gene product (gypsy_Ty3-element) (Saccharomyces cerevisiae)  
At4g06597	chr4:003650676	0.0	W/3650676-3655554	AT4G06597.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At4g06635	chr4:003656668	0.0	W/3656668-3657409	AT4G06635.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06598	chr4:003663945	0.0	W/3663945-3664660,3664776-3664844,3664914-3664978,3665220-3665395	AT4G06598.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: bZIP family transcription factor (TAIR:AT1G58110.2).  protein_id AT4G06598.1p  transcript_id AT4G06598.1  protein_id AT4G06598.1p  transcript_id AT4G06598.1  
At4g06599	chr4:003667209	0.0	C/3667209-3667495,3666989-3667133,3666805-3666919,3666666-3666729,3666413-3666578,3666079-3666324	AT4G06599.1  CDS  go_component nucleus|GO:0005634||IEA  go_process protein modification process|GO:0006464||IEA  go_function phosphoprotein phosphatase activity|GO:0004721||IEA  product ubiquitin family protein  note ubiquitin family protein; FUNCTIONS IN: phosphoprotein phosphatase activity; INVOLVED IN: protein modification process; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), HAD-superfamily hydrolase, subfamily IIID (InterPro:IPR011943), NLI interacting factor (InterPro:IPR004274); Has 297 Blast hits to 297 proteins in 94 species: Archae - 0; Bacteria - 4; Metazoa - 118; Fungi - 37; Plants - 59; Viruses - 6; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT4G06599.1p  transcript_id AT4G06599.1  protein_id AT4G06599.1p  transcript_id AT4G06599.1  
At4g06600	chr4:003668044	0.0	C/3668044-3668724	AT4G06600.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At4g06601	chr4:003674236	0.0	C/3674236-3675759	AT4G06601.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06602	chr4:003678387	0.0	W/3678387-3681572	AT4G06602.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.0e-80 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At4g06603	chr4:003682803	0.0	W/3682803-3685307	AT4G06603.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G34590.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G40133.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G60930.1); similar to hypothetical protein 27.t00126 [Brassica oleracea] (GB:ABD65062.1)  
At4g06604	chr4:003685906	0.0	C/3685906-3691542	AT4G06604.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.4e-248 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At4g06605	chr4:003691813	0.0	W/3691813-3697533	AT4G06605.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.9e-231 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06606	chr4:003698609	0.0	W/3698609-3700468	AT4G06606.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06607	chr4:003701839	0.0	W/3701839-3703218	AT4G06607.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06608	chr4:003705453	0.0	W/3705453-3709736	AT4G06608.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein, temporary gene name assignment  
At4g06609	chr4:003710836	0.0	C/3710836-3716142	AT4G06609.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 3.8e-179 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At4g06610	chr4:003716881	0.0	C/3716881-3717567	AT4G06610.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.9e-35 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06611	chr4:003717673	0.0	C/3717673-3718425	AT4G06611.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At4g06612	chr4:003721430	0.0	C/3721430-3722077	AT4G06612.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06613	chr4:003726950	0.0	W/3726950-3728845	AT4G06613.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 1.5e-52 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At4g06614	chr4:003730027	0.0	W/3730027-3731235	AT4G06614.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to Putative transposase, blastp match of 29% identity and 4.4e-17 P-value to GP|20042909|gb|AAM08737.1|AC025098_4|AC025098 Putative transposase {Oryza sativa (japonica cultivar-group)}  
At4g06616	chr4:003731894	0.0	W/3731894-3732487	AT4G06616.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06618	chr4:003732864	0.0	W/3732864-3733313	AT4G06618.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 42% identity and 1.2e-18 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}  
At4g06620	chr4:003734287	0.0	C/3734287-3736036	AT4G06620.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 8.5e-83 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus)  
At4g06622	chr4:003736670	0.0	C/3736670-3738067	AT4G06622.1  mRNA_TE_gene  pseudo  function pseudogene of unknown protein  note Transposable element gene, pseudogene, expressed protein  
At4g06624	chr4:003739442	0.0	C/3739442-3741301	AT4G06624.1  mRNA_TE_gene  pseudo  note Transposable element gene, Athila retroelement ORF1 protein  
At4g06626	chr4:003742453	0.0	C/3742453-3748127	AT4G06626.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.8e-157 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06628	chr4:003749370	0.0	C/3749370-3753281	AT4G06628.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 7.2e-125 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At4g06630	chr4:003754366	0.0	W/3754366-3757659	AT4G06630.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.1e-46 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)  
At4g06632	chr4:003760642	0.0	C/3760642-3762441	AT4G06632.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 3.9e-05 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At4g06641	chr4:003763864	0.0	W/3763864-3764088	AT4G06641.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G01080; beta-galactosidase  
At4g06634	chr4:003765941	0.0	C/3765941-3766177,3765765-3765854,3765509-3765652,3764499-3765077	AT4G06634.2  CDS  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), Zinc finger, C2H2-type/integrase, DNA-binding (InterPro:IPR013087); BEST Arabidopsis thaliana protein match is: ELF6 (EARLY FLOWERING 6); transcription factor (TAIR:AT5G04240.1); Has 105570 Blast hits to 34938 proteins in 883 species: Archae - 4; Bacteria - 37; Metazoa - 99324; Fungi - 2694; Plants - 259; Viruses - 38; Other Eukaryotes - 3214 (source: NCBI BLink).  protein_id AT4G06634.2p  transcript_id AT4G06634.2  protein_id AT4G06634.2p  transcript_id AT4G06634.2  
At4g06634	chr4:003766348	0.0	C/3766348-3766439,3766218-3766276,3765941-3766140,3765765-3765854,3765509-3765652,3764499-3765077	AT4G06634.1  CDS  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), Zinc finger, C2H2-type/integrase, DNA-binding (InterPro:IPR013087); BEST Arabidopsis thaliana protein match is: ELF6 (EARLY FLOWERING 6); transcription factor (TAIR:AT5G04240.1); Has 105509 Blast hits to 34937 proteins in 883 species: Archae - 4; Bacteria - 37; Metazoa - 99278; Fungi - 2690; Plants - 257; Viruses - 38; Other Eukaryotes - 3205 (source: NCBI BLink).  protein_id AT4G06634.1p  transcript_id AT4G06634.1  protein_id AT4G06634.1p  transcript_id AT4G06634.1  
At4g06636	chr4:003776356	0.0	W/3776356-3779484	AT4G06636.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 1.9e-74 P-value blast match to Q9SJR8 /172-333 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g06638	chr4:003781708	0.0	C/3781708-3783723	AT4G06638.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, Ulp1 protease -related, temporary gene name assignment  
At4g06640	chr4:003784503	0.0	W/3784503-3789539	AT4G06640.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 6.4e-159 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays)  
At4g06642	chr4:003790100	0.0	C/3790100-3794683	AT4G06642.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06644	chr4:003795731	0.0	W/3795731-3801568	AT4G06644.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.2e-19 P-value blast match to GB:BAA20419 reverse transcriptase (LINE-element) (Mus musculus)  
At4g06646	chr4:003802902	0.0	C/3802902-3804011	AT4G06646.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to OJ1081_B12.13, blastp match of 33% identity and 9.8e-51 P-value to GP|27817864|dbj|BAC55632.1||AP003865 OJ1081_B12.13 {Oryza sativa (japonica cultivar-group)}  
At4g06648	chr4:003813569	0.0	C/3813569-3816028	AT4G06648.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.0e-181 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06650	chr4:003820472	0.0	W/3820472-3824475	AT4G06650.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 9.1e-125 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At4g06652	chr4:003825311	0.0	W/3825311-3827950	AT4G06652.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 4.5e-31 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At4g06654	chr4:003832288	0.0	W/3832288-3835071	AT4G06654.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 3.2e-88 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At4g06656	chr4:003841927	0.0	C/3841927-3850392	AT4G06656.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.5e-294 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06658	chr4:003852325	0.0	W/3852325-3856095	AT4G06658.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.4e-182 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)  
At4g06660	chr4:003863284	0.0	C/3863284-3866601	AT4G06660.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.8e-275 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06664	chr4:003869799	0.0	C/3869799-3871808	AT4G06664.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06666	chr4:003872762	0.0	C/3872762-3875569	AT4G06666.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 0. P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06668	chr4:003877280	0.0	W/3877280-3877888	AT4G06668.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 6.7e-21 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At4g06670	chr4:003881990	0.0	W/3881990-3888610	AT4G06670.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 2.4e-141 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At4g06672	chr4:003888626	0.0	C/3888626-3889201	AT4G06672.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G32070.1)  
At4g06674	chr4:003890184	0.0	C/3890184-3892550	AT4G06674.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 3.1e-71 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g06676	chr4:003898998	0.0	W/3898998-3899089,3899168-3899233,3899705-3899846,3899968-3900020,3900257-3900391,3900488-3900551,3900650-3900735,3900838-3900920,3901001-3901077,3901150-3901170	AT4G06676.2  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Etoposide-induced 2.4 (InterPro:IPR009890).  protein_id AT4G06676.2p  transcript_id AT4G06676.2  protein_id AT4G06676.2p  transcript_id AT4G06676.2  
At4g06676	chr4:003898998	0.0	W/3898998-3899089,3899168-3899233,3899705-3899846,3899968-3900020,3900257-3900391,3900488-3900551,3900650-3900735,3900838-3900920,3901001-3901077,3901161-3901276,3901541-3901589	AT4G06676.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Etoposide-induced 2.4 (InterPro:IPR009890); Has 62 Blast hits to 59 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 55; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G06676.1p  transcript_id AT4G06676.1  protein_id AT4G06676.1p  transcript_id AT4G06676.1  
At4g06678	chr4:003904318	0.0	C/3904318-3905304	AT4G06678.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06680	chr4:003906565	0.0	C/3906565-3907341	AT4G06680.1  mRNA_TE_gene  pseudo  note Transposable element gene, Athila retroelement ORF1 protein  
At4g06682	chr4:003908146	0.0	W/3908146-3912063	AT4G06682.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.2e-196 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At4g06684	chr4:003913062	0.0	W/3913062-3914818	AT4G06684.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 4.2e-22 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At4g06686	chr4:003915379	0.0	C/3915379-3919648	AT4G06686.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 6.7e-122 P-value blast match to gb|AAL06422.1|AF378081_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At4g06688	chr4:003920693	0.0	W/3920693-3920964,3921059-3921108,3921200-3921647,3921722-3921834,3922024-3922151,3922598-3922753,3922944-3923224,3923843-3923995,3924206-3924437	AT4G06688.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT5G32590.1).  protein_id AT4G06688.1p  transcript_id AT4G06688.1  protein_id AT4G06688.1p  transcript_id AT4G06688.1  
At4g06692	chr4:003924576	0.0	W/3924576-3930656	AT4G06692.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 5.8e-160 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At4g06694	chr4:003931412	0.0	C/3931412-3934516	AT4G06694.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.0e-68 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06696	chr4:003935823	0.0	W/3935823-3937394	AT4G06696.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 4.7e-64 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At4g06697	chr4:003937487	0.0	C/3937487-3938244	AT4G06697.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 1.2e-34 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At4g06701	chr4:003939266	0.0	C/3939266-3940749	AT4G06701.5  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G06701.5  
At4g06701	chr4:003939377	0.0	C/3939377-3940797	AT4G06701.3  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G06701.3  
At4g06701	chr4:003939444	0.0	C/3939444-3940741	AT4G06701.2  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G06701.2  
At4g06701	chr4:003939600	0.0	C/3939600-3940720	AT4G06701.4  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G06701.4  
At4g06701	chr4:003939606	0.0	C/3939606-3940720	AT4G06701.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G06701.1  
At4g06699	chr4:003942357	0.0	C/3942357-3945018	AT4G06699.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06698	chr4:003945668	0.0	C/3945668-3948238	AT4G06698.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 3.4e-40 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At4g06700	chr4:003949133	0.0	C/3949133-3950602	AT4G06700.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 5.7e-54 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)  
At4g06702	chr4:003957182	0.0	C/3957182-3958339	AT4G06702.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06704	chr4:003959689	0.0	C/3959689-3961611	AT4G06704.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to retrotransposons  
At4g06708	chr4:003962925	0.0	C/3962925-3965636	AT4G06708.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.9e-289 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06710	chr4:003988849	0.0	C/3988849-3989259	AT4G06710.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06712	chr4:003990945	0.0	C/3990945-3992813	AT4G06712.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06714	chr4:003993731	0.0	C/3993731-3996211	AT4G06714.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 0. P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06716	chr4:003997492	0.0	C/3997492-3997755	AT4G06716.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G37015.1)  
At4g06718	chr4:004017248	0.0	C/4017248-4018366	AT4G06718.1  mRNA_TE_gene  pseudo  function pseudogene of unknown protein  note Transposable element gene, pseudogene, expressed protein  
At4g06720	chr4:004019626	0.0	C/4019626-4021476	AT4G06720.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06722	chr4:004022825	0.0	C/4022825-4024999	AT4G06722.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.3e-199 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06724	chr4:004026264	0.0	C/4026264-4026602	AT4G06724.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G06728.1)  
At4g06726	chr4:004029121	0.0	C/4029121-4032111	AT4G06726.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 5.6e-284 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06728	chr4:004033357	0.0	C/4033357-4033704	AT4G06728.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G06724.1)  
At4g06730	chr4:004034676	0.0	C/4034676-4035311	AT4G06730.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06732	chr4:004035315	0.0	W/4035315-4035704	AT4G06732.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06734	chr4:004036982	0.0	W/4036982-4039699	AT4G06734.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 8.0e-279 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06735	chr4:004040109	0.0	W/4040109-4040699	AT4G06735.1  mRNA_TE_gene  pseudo  note Transposable element gene  
At4g06736	chr4:004041130	0.0	W/4041130-4043094	AT4G06736.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06738	chr4:004044836	0.0	W/4044836-4045363	AT4G06738.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g06740	chr4:004045390	0.0	C/4045390-4045647	AT4G06740.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G06740.1p  transcript_id AT4G06740.1  protein_id AT4G06740.1p  transcript_id AT4G06740.1  
At4g06742	chr4:004049903	0.0	W/4049903-4051750	AT4G06742.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.8e-29 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g06744	chr4:004070870	0.0	C/4070870-4072084	AT4G06744.1  CDS  go_function protein binding|GO:0005515||IEA  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein / extensin family protein  note leucine-rich repeat family protein / extensin family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT3G19320.1); Has 25956 Blast hits to 7632 proteins in 409 species: Archae - 10; Bacteria - 542; Metazoa - 1041; Fungi - 73; Plants - 22939; Viruses - 0; Other Eukaryotes - 1351 (source: NCBI BLink).  protein_id AT4G06744.1p  transcript_id AT4G06744.1  protein_id AT4G06744.1p  transcript_id AT4G06744.1  
At4g06746	chr4:004074093	0.0	C/4074093-4074545	AT4G06746.1  CDS  gene_syn RAP2.9, related to AP2 9  gene RAP2.9  function encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.9). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1 and RAP2.10.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_function transcription factor activity|GO:0003700||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700||ISS  product RAP2.9 (related to AP2 9); DNA binding / transcription factor  note related to AP2 9 (RAP2.9); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: RAP2.10 (related to AP2 10); DNA binding / transcription factor (TAIR:AT4G36900.1); Has 3637 Blast hits to 3553 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3631; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G06746.1p  transcript_id AT4G06746.1  protein_id AT4G06746.1p  transcript_id AT4G06746.1  
At4g06748	chr4:004077798	0.0	W/4077798-4079408	AT4G06748.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At4g06750	chr4:004084641	0.0	C/4084641-4086415	AT4G06750.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 3.0e-60 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At4g06752	chr4:004099561	0.0	C/4099561-4103088	AT4G06752.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 4.8e-276 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At4g07031	chr4:004106542	0.0	W/4106542-4107491	AT4G07031.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to cytochrome P-450 aromatase-related [Arabidopsis thaliana] (TAIR:AT2G05870.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At4g07310	chr4:004108477	0.0	W/4108477-4109489	AT4G07310.1  mRNA_TE_gene  pseudo  gene_syn F14G16.2, F14G16_2  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05860.1); similar to hypothetical protein 31.t00082 [Brassica oleracea] (GB:ABD65101.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At4g07315	chr4:004110265	0.0	W/4110265-4115453	AT4G07315.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 6.8e-190 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At4g07320	chr4:004115732	0.0	C/4115732-4119835	AT4G07320.1  pseudogenic_transcript  pseudo  gene_syn F14G16.3, F14G16_3  note pseudogene, hypothetical protein  
At4g07324	chr4:004121888	0.0	W/4121888-4124050	AT4G07324.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 2.0e-145 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays)  
At4g07327	chr4:004124213	0.0	C/4124213-4126048	AT4G07327.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 5.1e-57 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g07330	chr4:004127541	0.0	W/4127541-4128870	AT4G07330.1  mRNA_TE_gene  pseudo  gene_syn F14G16.1, F14G16_1  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 2.6e-13 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At4g07331	chr4:004129689	0.0	C/4129689-4130948	AT4G07331.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 6.1e-23 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea)  
At4g07332	chr4:004132301	0.0	W/4132301-4132813	AT4G07332.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to putative AP endonuclease/reverse transcriptase, similar to putative non-LTR retroelement reverse transcriptase; blastp match of 25% identity and 1.5e-11 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}  
At4g07334	chr4:004135467	0.0	W/4135467-4139522	AT4G07334.1  mRNA_TE_gene  pseudo  gene_syn AT4G07322  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.4e-97 P-value blast match to gb|AAL06422.1|AF378081_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At4g07336	chr4:004142965	0.0	C/4142965-4143840	AT4G07336.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 7.8e-10 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)  
At4g07338	chr4:004149075	0.0	C/4149075-4153817	AT4G07338.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, helicase -related, similar to putative helicase; blastp match of 48% identity and 3.5e-91 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)}  
At4g07339	chr4:004157880	0.0	C/4157880-4160875	AT4G07339.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.1e-75 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g07340	chr4:004168181	0.0	C/4168181-4170645	AT4G07340.1  mRNA_TE_gene  pseudo  gene_syn F28D6.9, F28D6_9  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05090.1); similar to Ribosomal protein S2; Nucleic acid-binding, OB-fold [Medicago truncatula] (GB:ABE78251.1); similar to Ribosomal protein S2; Nucleic acid-binding, OB-fold [Medicago truncatula] (GB:ABE91948.1); similar to Nucleic acid-binding, OB-fold [Medicago truncatula] (GB:ABD32456.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At4g07350	chr4:004174686	0.0	C/4174686-4175227,4173256-4173374,4172848-4172997,4172609-4172790	AT4G07350.1  CDS  gene_syn F28D6.10, F28D6_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G40129.1); Has 55 Blast hits to 41 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G07350.1p  transcript_id AT4G07350.1  protein_id AT4G07350.1p  transcript_id AT4G07350.1  
At4g07355	chr4:004178491	0.0	C/4178491-4180361	AT4G07355.1  mRNA_TE_gene  pseudo  note Transposable element gene, Athila retroelement ORF1 protein -related, temporary automated functional assignment  
At4g07360	chr4:004181461	0.0	C/4181461-4184183	AT4G07360.1  mRNA_TE_gene  pseudo  gene_syn F28D6.11, F28D6_11  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.7e-295 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g07370	chr4:004186041	0.0	W/4186041-4188335	AT4G07370.1  mRNA_TE_gene  pseudo  gene_syn F28D6.7, F28D6_7  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.7e-75 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g07380	chr4:004192888	0.0	C/4192888-4193016,4192429-4192806	AT4G07380.1  CDS  gene_syn F28D6.12, F28D6_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 12 Blast hits to 12 proteins in 5 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G07380.1p  transcript_id AT4G07380.1  protein_id AT4G07380.1p  transcript_id AT4G07380.1  
At4g07390	chr4:004195750	0.0	W/4195750-4195896,4195972-4196125,4196206-4196278,4196362-4196428,4196525-4196584,4196917-4196977,4197071-4197112,4197214-4197317	AT4G07390.1  CDS  gene_syn F28D6.6, F28D6_6  go_component membrane|GO:0016020||ISS  product PQ-loop repeat family protein / transmembrane family protein  note PQ-loop repeat family protein / transmembrane family protein; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cystinosin/ERS1p repeat (InterPro:IPR006603), Mannose-P-dolichol utilization defect 1 protein (InterPro:IPR016817); BEST Arabidopsis thaliana protein match is: PQ-loop repeat family protein / transmembrane family protein (TAIR:AT5G59470.1); Has 451 Blast hits to 449 proteins in 128 species: Archae - 0; Bacteria - 0; Metazoa - 207; Fungi - 81; Plants - 111; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT4G07390.1p  transcript_id AT4G07390.1  protein_id AT4G07390.1p  transcript_id AT4G07390.1  
At4g07400	chr4:004197847	0.0	C/4197847-4199511	AT4G07400.1  CDS  gene_syn F28D6.13, F28D6_13, VFB3, VIER F-BOX PROTEINE 3  gene VFB3  function Encodes an F-box protein. Based on genetic analysis appears to be functionally redundant with VFB1,2,and 4. When levels of all 4 genes are reduced plants show defects in growth and reduced levels of auxin response genes.  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_function ubiquitin-protein ligase activity|GO:0004842|12169662|ISS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product VFB3 (VIER F-BOX PROTEINE 3); ubiquitin-protein ligase  note VIER F-BOX PROTEINE 3 (VFB3); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: VFB1 (VIER F-BOX PROTEINE 1); ubiquitin-protein ligase (TAIR:AT1G47056.1); Has 2677 Blast hits to 1563 proteins in 139 species: Archae - 0; Bacteria - 20; Metazoa - 1201; Fungi - 221; Plants - 1032; Viruses - 0; Other Eukaryotes - 203 (source: NCBI BLink).  protein_id AT4G07400.1p  transcript_id AT4G07400.1  protein_id AT4G07400.1p  transcript_id AT4G07400.1  
At4g07408	chr4:004201005	0.0	W/4201005-4201193	AT4G07408.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G07408.1p  transcript_id AT4G07408.1  protein_id AT4G07408.1p  transcript_id AT4G07408.1  
At4g07410	chr4:004204321	0.0	C/4204321-4204576,4204164-4204227,4203960-4204073,4203718-4203880,4203277-4203424,4202496-4203079,4202219-4202403,4201887-4202147,4201465-4201798	AT4G07410.2  CDS  gene_syn F28D6.14, F28D6_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: transducin-related / WD-40 repeat protein-related (TAIR:AT1G27470.1); Has 7609 Blast hits to 4677 proteins in 331 species: Archae - 10; Bacteria - 2574; Metazoa - 1807; Fungi - 1793; Plants - 450; Viruses - 0; Other Eukaryotes - 975 (source: NCBI BLink).  protein_id AT4G07410.2p  transcript_id AT4G07410.2  protein_id AT4G07410.2p  transcript_id AT4G07410.2  
At4g07410	chr4:004204978	0.0	C/4204978-4205136,4204692-4204835,4204321-4204612,4204164-4204227,4203960-4204073,4203718-4203880,4203277-4203424,4202496-4203079,4202219-4202403,4201887-4202147,4201465-4201798	AT4G07410.1  CDS  gene_syn F28D6.14, F28D6_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: transducin-related / WD-40 repeat protein-related (TAIR:AT1G27470.1); Has 7930 Blast hits to 5136 proteins in 341 species: Archae - 14; Bacteria - 2432; Metazoa - 2063; Fungi - 1810; Plants - 493; Viruses - 0; Other Eukaryotes - 1118 (source: NCBI BLink).  protein_id AT4G07410.1p  transcript_id AT4G07410.1  protein_id AT4G07410.1p  transcript_id AT4G07410.1  
At4g07415	chr4:004211040	0.0	C/4211040-4214012	AT4G07415.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.5e-148 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g07420	chr4:004214468	0.0	W/4214468-4215758	AT4G07420.1  mRNA_TE_gene  pseudo  gene_syn F28D6.5, F28D6_5  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 1.5e-35 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At4g07425	chr4:004217440	0.0	W/4217440-4218435	AT4G07425.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp1/En/Spm), has a 2.5e-22 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)  
At4g07430	chr4:004222368	0.0	C/4222368-4223527	AT4G07430.1  mRNA_TE_gene  pseudo  gene_syn F28D6.17, F28D6_17  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07310.1); similar to Nucleic acid-binding, OB-fold [Medicago truncatula] (GB:ABD33040.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At4g07435	chr4:004224489	0.0	C/4224489-4225576	AT4G07435.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to cytochrome P-450 aromatase-related [Arabidopsis thaliana] (TAIR:AT5G35270.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At4g07440	chr4:004226983	0.0	C/4226983-4228287	AT4G07440.1  mRNA_TE_gene  pseudo  gene_syn F28D6.18, F28D6_18  note Transposable element gene, similar to replication protein-related [Arabidopsis thaliana] (TAIR:AT5G35260.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain nucleic acid binding, OB-fold, tRNA/helicase-type; (InterPro:IPR004365)  
At4g07450	chr4:004229155	0.0	C/4229155-4231220	AT4G07450.1  mRNA_TE_gene  pseudo  gene_syn F28D6.19, F28D6_19  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30550.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05890.1); similar to hypothetical protein 31.t00031 [Brassica oleracea] (GB:ABD65118.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At4g07452	chr4:004233772	0.0	W/4233772-4234467	AT4G07452.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G24930.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD65085.1)  
At4g07454	chr4:004235774	0.0	C/4235774-4238371	AT4G07454.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 2.2e-139 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At4g07456	chr4:004240942	0.0	W/4240942-4243742	AT4G07456.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 0. P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g07458	chr4:004244696	0.0	W/4244696-4246537	AT4G07458.1  mRNA_TE_gene  pseudo  note Transposable element gene, Athila retroelement ORF1 protein -related, temporary automated functional assignment  
At4g07460	chr4:004257797	0.0	W/4257797-4259253	AT4G07460.1  mRNA_TE_gene  pseudo  gene_syn F28D6.2, F28D6_2  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42430.1)  
At4g07470	chr4:004263649	0.0	C/4263649-4264244	AT4G07470.1  mRNA_TE_gene  pseudo  gene_syn T3E15.13, T3E15_13  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30600.1); contains InterPro domain Protein of unknown function DUF730; (InterPro:IPR007989)  
At4g07475	chr4:004266732	0.0	C/4266732-4268259	AT4G07475.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to En/Spm-like transposon protein  
At4g07480	chr4:004268925	0.0	W/4268925-4270173	AT4G07480.1  mRNA_TE_gene  pseudo  gene_syn T3E15.12, T3E15_12  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G19300.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At4g07485	chr4:004270747	0.0	C/4270747-4271691	AT4G07485.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G11135.1)  
At4g07490	chr4:004272965	0.0	C/4272965-4274873	AT4G07490.1  mRNA_TE_gene  pseudo  gene_syn T3E15.14, T3E15_14  note Transposable element gene, transposon protein -related  
At4g07491	chr4:004275596	0.0	C/4275596-4278539	AT4G07491.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.2e-215 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g07492	chr4:004280079	0.0	W/4280079-4282831	AT4G07492.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.1e-179 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g07493	chr4:004283451	0.0	W/4283451-4283927	AT4G07493.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G12345.1)  
At4g07494	chr4:004283943	0.0	W/4283943-4285470	AT4G07494.1  mRNA_TE_gene  pseudo  note Transposable element gene, transposon protein -related, temporary automated functional assignment  
At4g07495	chr4:004288710	0.0	C/4288710-4291409	AT4G07495.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 5.8e-23 P-value blast match to Q9ZQK4 /162-295 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g07496	chr4:004292653	0.0	W/4292653-4293196	AT4G07496.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g07498	chr4:004296141	0.0	W/4296141-4297736	AT4G07498.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.1e-42 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g07500	chr4:004300049	0.0	C/4300049-4301484	AT4G07500.1  mRNA_TE_gene  pseudo  gene_syn T3E15.18, T3E15_18  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G09865.1)  
At4g07502	chr4:004301903	0.0	C/4301903-4305955	AT4G07502.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.3e-43 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g07504	chr4:004306232	0.0	W/4306232-4307692	AT4G07504.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 6.0e-29 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g07507	chr4:004309156	0.0	W/4309156-4310671	AT4G07507.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, replication protein A1 -related, similar to putative replication protein A1; blastp match of 78% identity and 5.6e-11 P-value to SP|P16865|H2A3_VOLCA Histone H2A-III. {Volvox carteri}  
At4g07510	chr4:004312212	0.0	W/4312212-4313622	AT4G07510.1  mRNA_TE_gene  pseudo  gene_syn T3E15.7, T3E15_7  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42110.1); similar to hypothetical protein 31.t00031 [Brassica oleracea] (GB:ABD65118.1); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At4g07515	chr4:004315085	0.0	C/4315085-4315396	AT4G07515.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08025.1); Has 39 Blast hits to 39 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G07515.1p  transcript_id AT4G07515.1  protein_id AT4G07515.1p  transcript_id AT4G07515.1  
At4g07516	chr4:004317040	0.0	C/4317040-4320951	AT4G07516.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.2e-08 P-value blast match to GB:AAC34906 reverse transcriptase (LINE-element) (Forficula auricularia)  
At4g07517	chr4:004321375	0.0	W/4321375-4325195	AT4G07517.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 4.4e-138 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At4g07518	chr4:004326227	0.0	W/4326227-4328921	AT4G07518.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 4.9e-32 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At4g07519	chr4:004331915	0.0	W/4331915-4332673	AT4G07519.1  mRNA_TE_gene  pseudo  function similarity to PttA-like transposon protein  note Transposable element gene, pseudogene, expressed protein, similar to putative PttA-like transposon protein  
At4g07521	chr4:004333498	0.0	C/4333498-4334169	AT4G07521.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to nucleic acid binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G01050.1); similar to Zinc finger, CCHC-type; Lipocalin [Medicago truncatula] (GB:ABE85229.1); similar to Zinc finger, CCHC-type; Endonuclease/exonuclease/phosphatase [Medicago truncatula] (GB:ABE79649.1); similar to Zinc finger, CCHC-type [Medicago truncatula] (GB:ABE91952.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878)  
At4g07522	chr4:004336637	0.0	W/4336637-4339125	AT4G07522.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 2.0e-76 P-value blast match to O22278 /203-375 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g07523	chr4:004340664	0.0	W/4340664-4341077	AT4G07523.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G27180.1)  
At4g07520	chr4:004341586	0.0	C/4341586-4345237	AT4G07520.1  mRNA_TE_gene  pseudo  gene_syn T3E15.22, T3E15_22  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G27160.1); similar to PREDICTED: hypothetical protein [Rattus norve (GB:XP_001075128.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048)  
At4g07524	chr4:004345868	0.0	C/4345868-4345975,4345348-4345452	AT4G07524.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function GTP binding|GO:0005525||ISS  product GTP-binding protein, putative  note GTP-binding protein, putative; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: ATRABA3 (ARABIDOPSIS RAB GTPASE HOMOLOG A3); GTP binding (TAIR:AT1G01200.1); Has 241 Blast hits to 241 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 15; Plants - 185; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT4G07524.1p  transcript_id AT4G07524.1  protein_id AT4G07524.1p  transcript_id AT4G07524.1  
At4g07525	chr4:004356679	0.0	W/4356679-4358128	AT4G07525.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 3.7e-09 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At4g07526	chr4:004359186	0.0	C/4359186-4359201,4358888-4359067,4358652-4358794	AT4G07526.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G33528.1); Has 13 Blast hits to 13 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G07526.1p  transcript_id AT4G07526.1  protein_id AT4G07526.1p  transcript_id AT4G07526.1  
At4g07526	chr4:004359186	0.0	C/4359186-4359201,4358888-4359067,4358652-4358794	AT4G07526.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G33528.1); Has 13 Blast hits to 13 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G07526.2p  transcript_id AT4G07526.2  protein_id AT4G07526.2p  transcript_id AT4G07526.2  
At4g07526	chr4:004359186	0.0	C/4359186-4359201,4358888-4359067,4358652-4358794	AT4G07526.3  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G33528.1); Has 13 Blast hits to 13 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G07526.3p  transcript_id AT4G07526.3  protein_id AT4G07526.3p  transcript_id AT4G07526.3  
At4g07528	chr4:004360353	0.0	W/4360353-4364382	AT4G07528.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.6e-141 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At4g07530	chr4:004365350	0.0	C/4365350-4368615	AT4G07530.1  mRNA_TE_gene  pseudo  gene_syn T3E15.23, T3E15_23  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30810.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G04070.1); similar to myosin heavy chain-related [Arabidopsis thaliana] (TAIR:AT4G08113.1); similar to hypothetical protein 26.t00052 [Brassica oleracea] (GB:ABD65035.1); contains InterPro domain Protein of unknown function DUF1633; (InterPro:IPR012436)  
At4g07540	chr4:004370205	0.0	C/4370205-4371976	AT4G07540.1  mRNA_TE_gene  pseudo  gene_syn T3E15.27, T3E15_27  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 2.2e-153 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At4g07550	chr4:004377639	0.0	W/4377639-4378351	AT4G07550.1  mRNA_TE_gene  pseudo  gene_syn T3E15.24, T3E15_24  note Transposable element gene, gypsy-like retrotransposon family, has a 4.2e-07 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At4g07560	chr4:004380465	0.0	C/4380465-4381663	AT4G07560.1  mRNA_TE_gene  pseudo  gene_syn T3E15.25, T3E15_25  note Transposable element gene, transposon protein -related  
At4g07563	chr4:004382464	0.0	C/4382464-4385487	AT4G07563.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 5.0e-144 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g07566	chr4:004386294	0.0	W/4386294-4388384	AT4G07566.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.9e-72 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g07570	chr4:004389278	0.0	W/4389278-4390725	AT4G07570.1  mRNA_TE_gene  pseudo  gene_syn T14A16.4, T14A16_4  note Transposable element gene, pseudogene, hypothetical protein  
At4g07580	chr4:004394226	0.0	W/4394226-4396261	AT4G07580.1  mRNA_TE_gene  pseudo  gene_syn T14A16.3, T14A16_3  note Transposable element gene, pseudogene, Ulp1 protease family, contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain  
At4g07583	chr4:004398088	0.0	W/4398088-4398727	AT4G07583.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g07586	chr4:004404032	0.0	C/4404032-4406056	AT4G07586.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g07590	chr4:004407229	0.0	C/4407229-4407894	AT4G07590.1  mRNA_TE_gene  pseudo  gene_syn T14A16.5, T14A16_5  note Transposable element gene, gypsy-like retrotransposon family, has a 2.3e-17 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At4g07595	chr4:004407955	0.0	W/4407955-4408606	AT4G07595.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g07600	chr4:004409776	0.0	W/4409776-4414629	AT4G07600.1  mRNA_TE_gene  pseudo  gene_syn T14A16.2, T14A16_2  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.9e-166 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g07605	chr4:004415059	0.0	W/4415059-4416131	AT4G07605.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g07620	chr4:004418650	0.0	W/4418650-4421820	AT4G07620.1  mRNA_TE_gene  pseudo  gene_syn F10A2.16, F10A2_16  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 7.1e-216 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g07630	chr4:004422655	0.0	W/4422655-4425460	AT4G07630.1  mRNA_TE_gene  pseudo  gene_syn F10A2.15, F10A2_15  note Transposable element gene, pseudogene, hypothetical protein, contains Pfam profile PF03078: ATHILA ORF-1 family  
At4g07640	chr4:004426899	0.0	W/4426899-4429920	AT4G07640.1  mRNA_TE_gene  pseudo  gene_syn F10A2.14, F10A2_14  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.1e-250 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g07650	chr4:004434719	0.0	W/4434719-4436197	AT4G07650.1  mRNA_TE_gene  pseudo  gene_syn F10A2.13, F10A2_13  note Transposable element gene, pseudogene, hypothetical protein  
At4g07660	chr4:004436761	0.0	C/4436761-4441587	AT4G07660.1  mRNA_TE_gene  pseudo  gene_syn F10A2.17, F10A2_17  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 6.9e-240 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g07662	chr4:004446861	0.0	W/4446861-4448549	AT4G07662.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, helicase -related, similar to putative helicase; blastp match of 45% identity and 5.1e-88 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)}  
At4g07664	chr4:004452122	0.0	W/4452122-4456483	AT4G07664.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.6e-114 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g07666	chr4:004458600	0.0	C/4458600-4458842,4458063-4458173,4457453-4457609,4456935-4457362,4456702-4456791	AT4G07666.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G07666.1p  transcript_id AT4G07666.1  protein_id AT4G07666.1p  transcript_id AT4G07666.1  
At4g07668	chr4:004460313	0.0	C/4460313-4462897	AT4G07668.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 2.5e-141 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At4g07670	chr4:004462911	0.0	W/4462911-4463394,4463759-4463810,4463890-4463995,4464056-4464256	AT4G07670.1  CDS  gene_syn F10A2.10, F10A2_10  go_component mitochondrion|GO:0005739|14671022|IDA  go_process proteolysis|GO:0006508||ISS  go_function peptidase activity|GO:0008233||ISS  product protease-associated (PA) domain-containing protein  note protease-associated (PA) domain-containing protein; FUNCTIONS IN: peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137); BEST Arabidopsis thaliana protein match is: peptidase M28 family protein (TAIR:AT5G19740.1); Has 1171 Blast hits to 1167 proteins in 173 species: Archae - 2; Bacteria - 174; Metazoa - 471; Fungi - 198; Plants - 63; Viruses - 0; Other Eukaryotes - 263 (source: NCBI BLink).  protein_id AT4G07670.1p  transcript_id AT4G07670.1  protein_id AT4G07670.1p  transcript_id AT4G07670.1  
At4g07675	chr4:004467141	0.0	C/4467141-4467147,4466604-4466687,4466367-4466498,4466013-4466293	AT4G07675.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G49700.2); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G07675.1p  transcript_id AT4G07675.1  protein_id AT4G07675.1p  transcript_id AT4G07675.1  
At4g07680	chr4:004467982	0.0	W/4467982-4471439	AT4G07680.1  mRNA_TE_gene  pseudo  gene_syn F10A2.9, F10A2_9  note Transposable element gene, pseudogene, Ulp1 protease famiy, contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain  
At4g07685	chr4:004471938	0.0	C/4471938-4472525	AT4G07685.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g07686	chr4:004474326	0.0	W/4474326-4474819	AT4G07686.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g07688	chr4:004475335	0.0	C/4475335-4475873	AT4G07688.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 2.3e-06 P-value blast match to At5g59620.1/14-257 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At4g07690	chr4:004476517	0.0	W/4476517-4477534	AT4G07690.1  mRNA_TE_gene  pseudo  gene_syn F10A2.8, F10A2_8  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30500.1); similar to hypothetical protein 31.t00082 [Brassica oleracea] (GB:ABD65101.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At4g07693	chr4:004478106	0.0	C/4478106-4479838	AT4G07693.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 3.1e-44 P-value blast match to O22273 /233-373 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g07696	chr4:004482672	0.0	C/4482672-4483947	AT4G07696.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, includes At2g06610, At5g28266, At3g42620, At4g07696, At2g06690, At2g16160, At2g05480, At2g12140, At1g45080, At2g16330  
At4g07699	chr4:004484951	0.0	W/4484951-4485066	AT4G07699.1  pseudogenic_transcript  pseudo  function pseudogene of zinc knuckle (CCHC-type) family protein  
At4g07700	chr4:004485092	0.0	W/4485092-4487763	AT4G07700.1  mRNA_TE_gene  pseudo  gene_syn F10A2.7, F10A2_7  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.9e-13 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g07703	chr4:004489426	0.0	W/4489426-4492749	AT4G07703.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 5.1e-98 P-value blast match to gb|AAL06419.1|AF378075_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At4g07706	chr4:004494938	0.0	C/4494938-4496399	AT4G07706.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 4.2e-16 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota)  
At4g07713	chr4:004498043	0.0	W/4498043-4499935	AT4G07713.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 1.1e-21 P-value blast match to O81510 /24-166 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g07720	chr4:004503023	0.0	W/4503023-4507072	AT4G07720.1  pseudogenic_transcript  pseudo  gene_syn F10A2.3, F10A2_3  note pseudogene, hypothetical protein  
At4g07725	chr4:004508058	0.0	C/4508058-4513286	AT4G07725.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 4.8e-193 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At4g07730	chr4:004515508	0.0	W/4515508-4517193	AT4G07730.1  mRNA_TE_gene  pseudo  gene_syn F10A2.5, F10A2_5  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 6.8e-198 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g07733	chr4:004519268	0.0	C/4519268-4524469	AT4G07733.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.5e-37 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g07736	chr4:004526940	0.0	W/4526940-4528888	AT4G07736.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.6e-114 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g07738	chr4:004532890	0.0	W/4532890-4535493	AT4G07738.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.2e-18 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g07740	chr4:004539638	0.0	W/4539638-4539796,4539869-4539964,4540046-4540208,4540504-4540682	AT4G07740.1  CDS  gene_syn T6L9.5, T6L9_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43150.1); Has 28 Blast hits to 28 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G07740.1p  transcript_id AT4G07740.1  protein_id AT4G07740.1p  transcript_id AT4G07740.1  
At4g07742	chr4:004541189	0.0	C/4541189-4542994	AT4G07742.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 5.2e-55 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At4g07744	chr4:004545730	0.0	C/4545730-4546360	AT4G07744.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 2.1e-79 P-value blast match to aT6L9 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)  
At4g07747	chr4:004547598	0.0	C/4547598-4547828	AT4G07747.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At4g07750	chr4:004552267	0.0	W/4552267-4554269	AT4G07750.1  mRNA_TE_gene  pseudo  gene_syn T6L9.4, T6L9_4  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 2.9e-168 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At4g07755	chr4:004560551	0.0	C/4560551-4565947	AT4G07755.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.2e-131 P-value blast match to gb|AAL06422.1|AF378081_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At4g07760	chr4:004567163	0.0	W/4567163-4571912	AT4G07760.1  mRNA_TE_gene  pseudo  gene_syn T6L9.2, T6L9_2  note Transposable element gene, CACTA-like transposase family (Tnp1/En/Spm), has a 5.4e-220 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)  
At4g07770	chr4:004592806	0.0	W/4592806-4594743	AT4G07770.1  mRNA_TE_gene  pseudo  gene_syn F5K24.12  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 5.7e-12 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At4g07780	chr4:004599522	0.0	W/4599522-4601757	AT4G07780.1  mRNA_TE_gene  pseudo  gene_syn F5K24.5, F5K24_5  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.1e-225 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g07786	chr4:004604907	0.0	C/4604907-4605014	AT4G07786.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G07786.1p  transcript_id AT4G07786.1  protein_id AT4G07786.1p  transcript_id AT4G07786.1  
At4g07790	chr4:004606968	0.0	W/4606968-4609226	AT4G07790.1  mRNA_TE_gene  pseudo  gene_syn F5K24.4, F5K24_4  note Transposable element gene, hypothetical protein  
At4g07795	chr4:004611541	0.0	W/4611541-4612782	AT4G07795.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, replication protein A1  
At4g07800	chr4:004615180	0.0	W/4615180-4617131	AT4G07800.1  mRNA_TE_gene  pseudo  gene_syn F5K24.3, F5K24_3  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13250.1); similar to hypothetical protein 31.t00030 [Brassica oleracea] (GB:ABD65117.1); contains domain HELICASE-RELATED (PTHR10492)  
At4g07803	chr4:004618958	0.0	W/4618958-4619983	AT4G07803.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, helicase -related, similar to putative helicase; blastp match of 36% identity and 1.6e-43 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)}  
At4g07806	chr4:004623668	0.0	C/4623668-4627657	AT4G07806.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.0e-124 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At4g07810	chr4:004627672	0.0	W/4627672-4633769	AT4G07810.1  mRNA_TE_gene  pseudo  gene_syn F5K24.2, F5K24_2  note Transposable element gene, copia-like retrotransposon family, has a 7.1e-230 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At4g07812	chr4:004634683	0.0	C/4634683-4635274	AT4G07812.1  pseudogenic_transcript  pseudo  function unknown pseudogene  
At4g07820	chr4:004636864	0.0	C/4636864-4637346	AT4G07820.1  CDS  gene_syn F5K24.6, F5K24_6  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_component extracellular region|GO:0005576||ISS  go_function molecular_function|GO:0003674||ND  product pathogenesis-related protein, putative  note pathogenesis-related protein, putative; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: stem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related (InterPro:IPR001283), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: PR1 (PATHOGENESIS-RELATED GENE 1) (TAIR:AT2G14610.1); Has 883 Blast hits to 880 proteins in 140 species: Archae - 0; Bacteria - 32; Metazoa - 153; Fungi - 114; Plants - 576; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT4G07820.1p  transcript_id AT4G07820.1  protein_id AT4G07820.1p  transcript_id AT4G07820.1  
At4g07825	chr4:004643843	0.0	W/4643843-4644586	AT4G07825.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G07825.1p  transcript_id AT4G07825.1  protein_id AT4G07825.1p  transcript_id AT4G07825.1  
At4g07830	chr4:004645645	0.0	C/4645645-4648136	AT4G07830.1  mRNA_TE_gene  pseudo  gene_syn F5K24.7, F5K24_7  note Transposable element gene, gypsy-like retrotransposon family, has a 6.3e-159 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus)  
At4g07840	chr4:004652507	0.0	C/4652507-4655715	AT4G07840.1  mRNA_TE_gene  pseudo  gene_syn F5K24.8, F5K24_8  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element)  
At4g07841	chr4:004660966	0.0	W/4660966-4661384	AT4G07841.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G24440; protein binding / zinc ion binding protein  
At4g07843	chr4:004665413	0.0	C/4665413-4667500	AT4G07843.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 1.4e-108 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At4g07846	chr4:004670304	0.0	W/4670304-4670732	AT4G07846.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 0.00049 P-value blast match to GB:AAA98435 POL3 gene product (gypsy_Ty3-element) (Saccharomyces cerevisiae)  
At4g07850	chr4:004671637	0.0	W/4671637-4675725	AT4G07850.1  mRNA_TE_gene  pseudo  gene_syn F5K24.1, F5K24_1  note Transposable element gene, gypsy-like retrotransposon family, has a 3.2e-135 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At4g07856	chr4:004679082	0.0	C/4679082-4682792	AT4G07856.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.7e-218 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At4g07862	chr4:004688082	0.0	C/4688082-4688791	AT4G07862.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 3.9e-51 P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element)  
At4g07868	chr4:004691906	0.0	W/4691906-4692067,4692231-4692345,4692413-4692540	AT4G07868.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G07868.1p  transcript_id AT4G07868.1  protein_id AT4G07868.1p  transcript_id AT4G07868.1  
At4g07869	chr4:004693228	0.0	W/4693228-4693592	AT4G07869.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G24440; protein binding / zinc ion binding protein  
At4g07874	chr4:004697429	0.0	C/4697429-4699601	AT4G07874.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 5.3e-100 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At4g07890	chr4:004704733	0.0	C/4704733-4705830	AT4G07890.1  mRNA_TE_gene  pseudo  gene_syn T24G23.20, T24G23_20  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.2e-14 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g07893	chr4:004705914	0.0	W/4705914-4707698	AT4G07893.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to contains similarity to Arabidopsis thaliana hypothetical protein (GB:AC004483)  
At4g07896	chr4:004709082	0.0	W/4709082-4710125	AT4G07896.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to contains similarity to Arabidopsis thaliana hypothetical protein (GB:AC004483)  
At4g07915	chr4:004715846	0.0	C/4715846-4719661	AT4G07915.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 9.0e-15 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)  
At4g07917	chr4:004720838	0.0	W/4720838-4721570	AT4G07917.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 3.0e-08 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At4g07920	chr4:004723771	0.0	W/4723771-4726478	AT4G07920.1  mRNA_TE_gene  pseudo  gene_syn T24G23.50, T24G23_50  note Transposable element gene, pseudogene, hypothetical protein  
At4g07931	chr4:004727518	0.0	C/4727518-4729752	AT4G07931.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 8.2e-105 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At4g07932	chr4:004732198	0.0	W/4732198-4732285,4732615-4732692,4732927-4733129,4733206-4733424	AT4G07932.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43150.1); Has 22 Blast hits to 22 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G07932.1p  transcript_id AT4G07932.1  protein_id AT4G07932.1p  transcript_id AT4G07932.1  
At4g07933	chr4:004734322	0.0	C/4734322-4735737	AT4G07933.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.8e-47 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At4g07934	chr4:004738113	0.0	C/4738113-4741163	AT4G07934.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.1e-44 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g07935	chr4:004742556	0.0	C/4742556-4748277	AT4G07935.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 2.4e-86 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At4g07946	chr4:004751001	0.0	W/4751001-4751340	AT4G07946.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 2.8e-24 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At4g07947	chr4:004752023	0.0	W/4752023-4756955	AT4G07947.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g07936	chr4:004757119	0.0	W/4757119-4757899	AT4G07936.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g07937	chr4:004759073	0.0	W/4759073-4761628	AT4G07937.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.3e-243 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g07938	chr4:004763260	0.0	W/4763260-4768709	AT4G07938.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 6.9e-176 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g07939	chr4:004768785	0.0	W/4768785-4769447	AT4G07939.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to contains similarity to Arabidopsis thaliana hypothetical protein (GB:AC004483)  
At4g07941	chr4:004770582	0.0	W/4770582-4773320	AT4G07941.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.1e-311 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g07942	chr4:004773564	0.0	W/4773564-4776647	AT4G07942.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to Athila retroelement ORF2, putative  
At4g07943	chr4:004783594	0.0	W/4783594-4784235	AT4G07943.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05290.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05564.1); similar to hypothetical protein 40.t00047 [Brassica oleracea] (GB:ABD65162.1)  
At4g07944	chr4:004785038	0.0	W/4785038-4785708	AT4G07944.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G32394.1); contains domain Hedgehog/intein (Hint) domain (SSF51294)  
At4g07945	chr4:004788454	0.0	W/4788454-4790019	AT4G07945.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to putative reverse transcriptase, similar to reverse transcriptase, putative; blastp match of 30% identity and 1.1e-35 P-value to GP|20279456|gb|AAM18736.1|AC092548_14|AC092548 putative reverse transcriptase {Oryza sativa (japonica cultivar-group)}  
At4g07940	chr4:004792673	0.0	W/4792673-4792705,4792801-4792844,4793452-4793551,4793706-4793713,4793875-4794109	AT4G07940.1  CDS  gene_syn F1K3.1, F1K3_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61370.1); Has 15 Blast hits to 15 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G07940.1p  transcript_id AT4G07940.1  protein_id AT4G07940.1p  transcript_id AT4G07940.1  
At4g07950	chr4:004798910	0.0	W/4798910-4799105,4799386-4799510	AT4G07950.1  CDS  gene_syn F1K3.2, F1K3_2  go_process transcription|GO:0006350||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function transcription regulator activity|GO:0030528||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleus|GO:0005634||ISS  go_component cytoplasm|GO:0005737|15610358|IDA  go_process RNA elongation|GO:0006354||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product DNA-directed RNA polymerase III family protein  note DNA-directed RNA polymerase III family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: RNA elongation, regulation of transcription, DNA-dependent, transcription, regulation of transcription; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: male gametophyte; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, TFIIS-type (InterPro:IPR001222), DNA-directed RNA polymerase, M/15 kDa subunit (InterPro:IPR001529); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase III family protein (TAIR:AT1G01210.1); Has 795 Blast hits to 795 proteins in 228 species: Archae - 146; Bacteria - 0; Metazoa - 234; Fungi - 176; Plants - 62; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).  protein_id AT4G07950.1p  transcript_id AT4G07950.1  protein_id AT4G07950.1p  transcript_id AT4G07950.1  
At4g07960	chr4:004804353	0.0	C/4804353-4805114,4803966-4804274,4803609-4803899,4803403-4803516,4802628-4803251	AT4G07960.1  CDS  gene_syn ATCSLC12, CELLULOSE-SYNTHASE LIKE C12, CSLC12, F1K3.3, F1K3_3  gene ATCSLC12  function encodes a gene similar to cellulose synthase  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  product ATCSLC12 (CELLULOSE-SYNTHASE LIKE C12); cellulose synthase/ transferase, transferring glycosyl groups  note CELLULOSE-SYNTHASE LIKE C12 (ATCSLC12); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: ATCSLC5 (CELLULOSE-SYNTHASE LIKE C5); cellulose synthase/ transferase, transferring glycosyl groups (TAIR:AT4G31590.1); Has 3158 Blast hits to 3155 proteins in 862 species: Archae - 101; Bacteria - 2282; Metazoa - 45; Fungi - 78; Plants - 314; Viruses - 19; Other Eukaryotes - 319 (source: NCBI BLink).  protein_id AT4G07960.1p  transcript_id AT4G07960.1  protein_id AT4G07960.1p  transcript_id AT4G07960.1  
At4g07965	chr4:004808635	0.0	W/4808635-4808644,4808861-4809143,4809223-4809352	AT4G07965.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G07965.1p  transcript_id AT4G07965.1  protein_id AT4G07965.1p  transcript_id AT4G07965.1  
At4g07967	chr4:004810301	0.0	W/4810301-4815076	AT4G07967.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g07970	chr4:004816535	0.0	W/4816535-4819768	AT4G07970.1  mRNA_TE_gene  pseudo  gene_syn F1K3.5, F1K3_5  note Transposable element gene, hypothetical protein, similar to A. thaliana hypothetical proteins  
At4g07990	chr4:004829522	0.0	C/4829522-4829608,4828815-4829201,4827486-4827527,4827155-4827271,4826571-4826812,4825963-4825999,4825814-4825871,4825650-4825723	AT4G07990.1  CDS  go_function heat shock protein binding|GO:0031072||IEA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: ATP58IPK (ARABIDOPSIS HOMOLOG OF MAMALLIAN P58IPK); binding / heat shock protein binding (TAIR:AT5G03160.1); Has 7046 Blast hits to 7046 proteins in 1474 species: Archae - 47; Bacteria - 2968; Metazoa - 1308; Fungi - 297; Plants - 340; Viruses - 0; Other Eukaryotes - 2086 (source: NCBI BLink).  protein_id AT4G07990.1p  transcript_id AT4G07990.1  protein_id AT4G07990.1p  transcript_id AT4G07990.1  
At4g08000	chr4:004831118	0.0	W/4831118-4833406	AT4G08000.1  mRNA_TE_gene  pseudo  gene_syn F1K3.8, F1K3_8  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 1.0e-136 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At4g08010	chr4:004833729	0.0	W/4833729-4834707	AT4G08010.1  mRNA_TE_gene  pseudo  gene_syn F1K3.9, F1K3_9  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 2.4e-27 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)  
At4g08013	chr4:004835509	0.0	W/4835509-4835941	AT4G08013.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G40125.1)  
At4g08016	chr4:004837021	0.0	W/4837021-4838089	AT4G08016.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 6.1e-36 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At4g08020	chr4:004838849	0.0	W/4838849-4841107	AT4G08020.1  mRNA_TE_gene  pseudo  gene_syn F1K3.10, F1K3_10  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 2.5e-93 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota)  
At4g08022	chr4:004845129	0.0	W/4845129-4845476	AT4G08022.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At4g08025	chr4:004846879	0.0	W/4846879-4847226	AT4G08025.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G57760.1); Has 39 Blast hits to 39 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G08025.1p  transcript_id AT4G08025.1  protein_id AT4G08025.1p  transcript_id AT4G08025.1  
At4g08028	chr4:004851544	0.0	W/4851544-4851640,4851730-4851878	AT4G08028.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40995.1); Has 25 Blast hits to 25 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G08028.1p  transcript_id AT4G08028.1  protein_id AT4G08028.1p  transcript_id AT4G08028.1  
At4g08030	chr4:004854180	0.0	W/4854180-4857467	AT4G08030.1  mRNA_TE_gene  pseudo  gene_syn F1K3.11, F1K3_11  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.5e-66 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g08032	chr4:004863247	0.0	W/4863247-4864116	AT4G08032.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to putative transposable element, similar to transposase, putative; blastp match of 52% identity and 9.4e-41 P-value to GP|13122426|dbj|BAB32907.1||AP003047 putative transposable element {Oryza sativa (japonica cultivar-group)}  
At4g08035	chr4:004866554	0.0	W/4866554-4868343	AT4G08035.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G08035.1  
At4g08035	chr4:004866644	0.0	W/4866644-4868341	AT4G08035.2  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G08035.2  
At4g08033	chr4:004876764	0.0	C/4876764-4877894	AT4G08033.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g08034	chr4:004878902	0.0	C/4878902-4879717	AT4G08034.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to putative non-LTR retroelement reverse transcriptase, similar to reverse transcriptase, putative; blastp match of 37% identity and 1.2e-37 P-value to GP|10140689|gb|AAG13524.1|AC068924_29|AC068924 putative non-LTR retroelement reverse transcriptase {Oryza sativa (japonica cultivar-group)}  
At4g08036	chr4:004879723	0.0	W/4879723-4880031	AT4G08036.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.1e-08 P-value blast match to GB:AAC34906 reverse transcriptase (LINE-element) (Forficula auricularia)  
At4g08038	chr4:004880126	0.0	C/4880126-4880860	AT4G08038.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to reverse transcriptase, putative  
At4g08039	chr4:004885973	0.0	C/4885973-4886035,4884848-4884994	AT4G08039.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G08039.1p  transcript_id AT4G08039.1  protein_id AT4G08039.1p  transcript_id AT4G08039.1  
At4g08040	chr4:004887112	0.0	W/4887112-4887252,4887362-4887493,4887737-4887897,4887991-4888939	AT4G08040.1  CDS  gene_syn ACS11, T17A2.2, T17A2_2  gene ACS11  function encodes an aminotransferase that belongs to ACC synthase gene family structurally  go_process biosynthetic process|GO:0009058||IEA  go_component cellular_component|GO:0005575||ND  go_process ethylene biosynthetic process|GO:0009693||ISS  go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847|12968022|IDA  go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847||ISS  product ACS11; 1-aminocyclopropane-1-carboxylate synthase  note ACS11; FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate synthase activity; INVOLVED IN: ethylene biosynthetic process, biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon, petiole, leaf; EXPRESSED DURING: LP.10 ten leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase, class I and II (InterPro:IPR004839), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: ACS8; 1-aminocyclopropane-1-carboxylate synthase (TAIR:AT4G37770.1); Has 19937 Blast hits to 19933 proteins in 1691 species: Archae - 531; Bacteria - 11515; Metazoa - 636; Fungi - 494; Plants - 928; Viruses - 0; Other Eukaryotes - 5833 (source: NCBI BLink).  protein_id AT4G08040.1p  transcript_id AT4G08040.1  protein_id AT4G08040.1p  transcript_id AT4G08040.1  
At4g08050	chr4:004895659	0.0	C/4895659-4901632	AT4G08050.1  mRNA_TE_gene  pseudo  gene_syn T17A2.3, T17A2_3  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 0. P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g08053	chr4:004910489	0.0	C/4910489-4915180	AT4G08053.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 3.4e-89 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota)  
At4g08054	chr4:004916408	0.0	C/4916408-4919899	AT4G08054.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 7.0e-70 P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element)  
At4g08056	chr4:004921230	0.0	C/4921230-4921928	AT4G08056.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30843.1); similar to Integrase, catalytic re (GB:ABE86211.1)  
At4g08060	chr4:004924776	0.0	C/4924776-4928259	AT4G08060.1  mRNA_TE_gene  pseudo  gene_syn T17A2.4, T17A2_4  note Transposable element gene, CACTA-like transposase family (Tnp1/En/Spm), has a 0. P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)  
At4g08070	chr4:004928374	0.0	C/4928374-4931801	AT4G08070.1  mRNA_TE_gene  pseudo  gene_syn T17A2.5, T17A2_5  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 4.8e-286 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At4g08071	chr4:004933539	0.0	W/4933539-4934099	AT4G08071.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At4g08072	chr4:004944667	0.0	C/4944667-4946775	AT4G08072.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.5e-36 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g08073	chr4:004949563	0.0	W/4949563-4949745	AT4G08073.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G08073.1p  transcript_id AT4G08073.1  protein_id AT4G08073.1p  transcript_id AT4G08073.1  
At4g08074	chr4:004949910	0.0	W/4949910-4950530	AT4G08074.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.3e-20 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At4g08076	chr4:004951479	0.0	W/4951479-4954812	AT4G08076.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.7e-64 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g08078	chr4:004960143	0.0	W/4960143-4963962	AT4G08078.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.6e-276 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g08080	chr4:004964226	0.0	W/4964226-4966272	AT4G08080.1  mRNA_TE_gene  pseudo  gene_syn T13D4.1  note Transposable element gene, gypsy-like retrotransposon family (Athila), similar to a family of Arabidopsis thaliana hypothetical proteins with similarity to a Vicia faba retrotransposon-like gene  
At4g08090	chr4:004972738	0.0	W/4972738-4975935	AT4G08090.1  mRNA_TE_gene  pseudo  gene_syn T13D4.3, T13D4_3  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 1.4e-12 P-value blast match to At1g15560.1/58-302 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At4g08091	chr4:004980951	0.0	C/4980951-4983509	AT4G08091.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 4.4e-31 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At4g08092	chr4:004984426	0.0	C/4984426-4988683	AT4G08092.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 2.3e-143 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At4g08093	chr4:004990161	0.0	W/4990161-4991619	AT4G08093.1  pseudogenic_transcript  pseudo  function pseudogene of unknown protein  note expressed protein, blastp match of 44% identity and 9.5e-07 P-value to GP|14091850|gb|AAK53853.1|AC016781_7|AC016781 Hypothetical protein {Oryza sativa}  
At4g08094	chr4:004993175	0.0	C/4993175-4994696	AT4G08094.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.5e-198 P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element)  
At4g08095	chr4:004998060	0.0	C/4998060-5001542	AT4G08095.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 5.5e-92 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus)  
At4g08096	chr4:005001485	0.0	W/5001485-5002942	AT4G08096.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 5.3e-60 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus)  
At4g08097	chr4:005004096	0.0	W/5004096-5004235,5004375-5004456,5004538-5004617,5004697-5004801,5005023-5005103,5005175-5005261,5005327-5005461,5005528-5005663,5005738-5005932	AT4G08097.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G32190.1); Has 17 Blast hits to 17 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G08097.1p  transcript_id AT4G08097.1  protein_id AT4G08097.1p  transcript_id AT4G08097.1  
At4g08098	chr4:005006541	0.0	W/5006541-5007166	AT4G08098.1  pseudogenic_transcript  pseudo  function pseudogene of hypothetical protein  
At4g08099	chr4:005008113	0.0	C/5008113-5010738	AT4G08099.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.1e-34 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At4g08101	chr4:005011919	0.0	C/5011919-5013433	AT4G08101.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.7e-31 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g08102	chr4:005015763	0.0	C/5015763-5016267	AT4G08102.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 2.9e-23 P-value blast match to GB:226407 retrotransposon del1-46 (Gypsy_Ty3-element) (Lilium henryi)  
At4g08103	chr4:005017421	0.0	W/5017421-5020336	AT4G08103.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.7e-35 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g08116	chr4:005020237	0.0	C/5020237-5020486	AT4G08116.1  miRNA  gene_syn MICRORNA401, MIR401  gene MIR401  function Encodes a microRNA. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence:CGAAACTGGTGTCGACCGACA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR401 (MICRORNA401); miRNA  transcript_id AT4G08116.1  
At4g08104	chr4:005021329	0.0	C/5021329-5022048	AT4G08104.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.8e-45 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g08105	chr4:005023304	0.0	C/5023304-5026290	AT4G08105.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.5e-121 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At4g08106	chr4:005027996	0.0	C/5027996-5028513	AT4G08106.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.7e-28 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g08107	chr4:005031641	0.0	C/5031641-5032335	AT4G08107.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.4e-71 P-value blast match to T13P21 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)  
At4g08108	chr4:005039599	0.0	C/5039599-5043640	AT4G08108.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At4g08109	chr4:005049024	0.0	C/5049024-5054252	AT4G08109.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 5.6e-161 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g08111	chr4:005055667	0.0	C/5055667-5057174	AT4G08111.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28120.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28110.1)  
At4g08112	chr4:005060280	0.0	C/5060280-5063306	AT4G08112.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 7.3e-176 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g08113	chr4:005064591	0.0	W/5064591-5067431	AT4G08113.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30810.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G04070.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07530.1); similar to hypothetical protein 26.t00052 [Brassica oleracea] (GB:ABD65035.1); contains InterPro domain Protein of unknown function DUF1633; (InterPro:IPR012436)  
At4g08114	chr4:005068500	0.0	C/5068500-5073638	AT4G08114.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 3.6e-193 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At4g08115	chr4:005075027	0.0	C/5075027-5077893	AT4G08115.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 7.2e-05 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At4g08100	chr4:005079652	0.0	W/5079652-5083590	AT4G08100.1  mRNA_TE_gene  pseudo  gene_syn F9M13.15, F9M13_15  note Transposable element gene, gypsy-like retrotransposon family, has a 1.2e-123 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At4g08110	chr4:005083926	0.0	C/5083926-5086640	AT4G08110.1  mRNA_TE_gene  pseudo  gene_syn F9M13.14, F9M13_14  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 4.2e-66 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At4g08120	chr4:005090577	0.0	C/5090577-5092797	AT4G08120.1  mRNA_TE_gene  pseudo  gene_syn F9M13.13, F9M13_13  note Transposable element gene, CACTA-like transposase family (Tnp1/En/Spm), has a 1.0e-25 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)  
At4g08130	chr4:005093873	0.0	W/5093873-5095316	AT4G08130.1  mRNA_TE_gene  pseudo  gene_syn F9M13.12, F9M13_12  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G37045.1)  
At4g08131	chr4:005102540	0.0	C/5102540-5105519	AT4G08131.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.3e-05 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g08132	chr4:005105689	0.0	C/5105689-5108302	AT4G08132.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 5.6e-206 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g08134	chr4:005116243	0.0	W/5116243-5117919	AT4G08134.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 2.6e-103 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus)  
At4g08135	chr4:005119768	0.0	C/5119768-5120317	AT4G08135.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.2e-10 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g08136	chr4:005123401	0.0	W/5123401-5125322	AT4G08136.1  pseudogenic_transcript  pseudo  note purple acid phosphatase. putative, similar to purple acid phosphatase (GI:20257485) (Arabidopsis thaliana)  
At4g08138	chr4:005129185	0.0	C/5129185-5133659	AT4G08138.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 5.7e-299 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At4g08140	chr4:005135673	0.0	W/5135673-5135725,5135861-5135981,5136060-5136140	AT4G08140.1  CDS  gene_syn F9M13.6, F9M13_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A); binding / enzyme regulator (TAIR:AT2G20580.1); Has 286 Blast hits to 286 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 87; Plants - 35; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT4G08140.1p  transcript_id AT4G08140.1  protein_id AT4G08140.1p  transcript_id AT4G08140.1  
At4g08145	chr4:005138485	0.0	W/5138485-5139725	AT4G08145.1  mRNA_TE_gene  pseudo  note Transposable element gene, hypothetical protein, contains Pfam domain, PF04827: Protein of unknown function (DUF635)  
At4g08150	chr4:005150143	0.0	C/5150143-5150610,5149906-5150031,5149663-5149801,5148859-5149115,5147969-5148175	AT4G08150.1  CDS  gene_syn BP, BP1, BREVIPEDICELLUS, BREVIPEDICELLUS 1, F9M13.2, F9M13_2, KNAT1, KNOTTED-LIKE FROM ARABIDOPSIS THALIANA, KNOTTED-LIKE HOMEOBOX PROTEIN  gene KNAT1  function A member of class I knotted1-like homeobox gene family (together with KNAT2). Similar to the knotted1 (kn1) homeobox gene of maize. Normally expressed in the peripheral and rib zone of shoot apical meristem but not in the leaf primordia. It is also expressed in the fourth floral whorl, in the region that would become style, particularly in the cell surrounding the transmitting tissue. No expression was detected in the first three floral whorls. Expression is repressed by auxin and AS1 which results in the promotion of leaf fate.  go_component nucleus|GO:0005634|7866029|ISS  go_process cell fate specification|GO:0001708|7866029|IMP  go_process xylem and phloem pattern formation|GO:0010051|16038894|IMP  go_process cell fate commitment|GO:0045165|11917137|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|7866029|ISS  product KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA); transcription factor  note KNOTTED-LIKE FROM ARABIDOPSIS THALIANA (KNAT1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: xylem and phloem pattern formation, cell fate specification, cell fate commitment; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: KNOX2 (InterPro:IPR005541), ELK (InterPro:IPR005539), Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), KNOX1 (InterPro:IPR005540), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: STM (SHOOT MERISTEMLESS); transcription factor (TAIR:AT1G62360.1); Has 31934 Blast hits to 13918 proteins in 366 species: Archae - 4; Bacteria - 82; Metazoa - 2738; Fungi - 775; Plants - 3398; Viruses - 2; Other Eukaryotes - 24935 (source: NCBI BLink).  protein_id AT4G08150.1p  transcript_id AT4G08150.1  protein_id AT4G08150.1p  transcript_id AT4G08150.1  
At4g08151	chr4:005151863	0.0	C/5151863-5151979	AT4G08151.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G08151.1p  transcript_id AT4G08151.1  protein_id AT4G08151.1p  transcript_id AT4G08151.1  
At4g08160	chr4:005162644	0.0	C/5162644-5162694,5162212-5162552,5161938-5162115,5161303-5161857,5160381-5161224,5159211-5159500	AT4G08160.1  CDS  gene_syn ATXYN3, F9M13.1, F9M13_1  function Encodes a putative glycosyl hydrolase family 10 protein (xylanase).  go_process carbohydrate metabolic process|GO:0005975||IEA  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function endo-1,4-beta-xylanase activity|GO:0031176|12154138|ISS  product glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein  note glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein; FUNCTIONS IN: endo-1,4-beta-xylanase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Carbohydrate-binding, CenC-like (InterPro:IPR003305), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: RXF12; endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G58370.1); Has 1417 Blast hits to 1344 proteins in 275 species: Archae - 0; Bacteria - 707; Metazoa - 29; Fungi - 275; Plants - 211; Viruses - 0; Other Eukaryotes - 195 (source: NCBI BLink).  protein_id AT4G08160.1p  transcript_id AT4G08160.1  protein_id AT4G08160.1p  transcript_id AT4G08160.1  
At4g08160	chr4:005162644	0.0	C/5162644-5162694,5162212-5162552,5161938-5162115,5161303-5161857,5160381-5161224,5159935-5159945,5159495-5159500	AT4G08160.2  CDS  gene_syn ATXYN3, F9M13.1, F9M13_1  function Encodes a putative glycosyl hydrolase family 10 protein (xylanase).  go_process carbohydrate metabolic process|GO:0005975||IEA  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function endo-1,4-beta-xylanase activity|GO:0031176|12154138|ISS  product glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein  note glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein; FUNCTIONS IN: endo-1,4-beta-xylanase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Carbohydrate-binding, CenC-like (InterPro:IPR003305), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Galactose-binding like (InterPro:IPR008979), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: RXF12; endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G58370.1); Has 1385 Blast hits to 1313 proteins in 273 species: Archae - 0; Bacteria - 693; Metazoa - 29; Fungi - 273; Plants - 209; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink).  protein_id AT4G08160.2p  transcript_id AT4G08160.2  protein_id AT4G08160.2p  transcript_id AT4G08160.2  
At4g08170	chr4:005166050	0.0	C/5166050-5166094,5164948-5165068,5164743-5164835,5164443-5164562,5164185-5164361,5164046-5164101,5163884-5163968,5163707-5163807	AT4G08170.1  CDS  gene_syn T12G13.10, T12G13_10  go_function magnesium ion binding|GO:0000287||IEA  go_function catalytic activity|GO:0003824||IEA  go_function ATP binding|GO:0005524||IEA  go_function inositol-1,3,4-trisphosphate 5/6-kinase activity|GO:0035300||IEA  go_function inositol tetrakisphosphate 1-kinase activity|GO:0047325||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process response to wounding|GO:0009611|17675405|IEP  go_function catalytic activity|GO:0003824||ISS  product inositol 1,3,4-trisphosphate 5/6-kinase family protein  note inositol 1,3,4-trisphosphate 5/6-kinase family protein; FUNCTIONS IN: magnesium ion binding, inositol-1,3,4-trisphosphate 5/6-kinase activity, catalytic activity, ATP binding, inositol tetrakisphosphate 1-kinase activity; INVOLVED IN: response to wounding; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: ATP-grasp fold (InterPro:IPR011761), Inositol 1, 3, 4-trisphosphate 56-kinase (InterPro:IPR008656); BEST Arabidopsis thaliana protein match is: inositol 1,3,4-trisphosphate 5/6-kinase family protein (TAIR:AT4G33770.2); Has 282 Blast hits to 281 proteins in 54 species: Archae - 0; Bacteria - 2; Metazoa - 75; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT4G08170.1p  transcript_id AT4G08170.1  protein_id AT4G08170.1p  transcript_id AT4G08170.1  
At4g08170	chr4:005166807	0.0	C/5166807-5167000,5166290-5166371,5166050-5166082,5164948-5165068,5164743-5164835,5164443-5164562,5164185-5164361,5164046-5164101,5163884-5163968,5163707-5163807	AT4G08170.2  CDS  gene_syn T12G13.10, T12G13_10  go_function magnesium ion binding|GO:0000287||IEA  go_function catalytic activity|GO:0003824||IEA  go_function ATP binding|GO:0005524||IEA  go_function inositol-1,3,4-trisphosphate 5/6-kinase activity|GO:0035300||IEA  go_function inositol tetrakisphosphate 1-kinase activity|GO:0047325||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process response to wounding|GO:0009611|17675405|IEP  go_function catalytic activity|GO:0003824||ISS  product inositol 1,3,4-trisphosphate 5/6-kinase family protein  note inositol 1,3,4-trisphosphate 5/6-kinase family protein; FUNCTIONS IN: magnesium ion binding, inositol-1,3,4-trisphosphate 5/6-kinase activity, catalytic activity, ATP binding, inositol tetrakisphosphate 1-kinase activity; INVOLVED IN: response to wounding; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Inositol-tetrakisphosphate 1-kinase (InterPro:IPR017427), Inositol 1, 3, 4-trisphosphate 56-kinase (InterPro:IPR008656), ATP-grasp fold (InterPro:IPR011761); BEST Arabidopsis thaliana protein match is: inositol 1,3,4-trisphosphate 5/6-kinase family protein (TAIR:AT4G33770.1); Has 285 Blast hits to 285 proteins in 54 species: Archae - 0; Bacteria - 2; Metazoa - 78; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT4G08170.2p  transcript_id AT4G08170.2  protein_id AT4G08170.2p  transcript_id AT4G08170.2  
At4g08176	chr4:005168567	0.0	W/5168567-5168689	AT4G08176.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G08176.1p  transcript_id AT4G08176.1  protein_id AT4G08176.1p  transcript_id AT4G08176.1  
At4g08180	chr4:005169727	0.0	W/5169727-5170296,5170384-5170740,5171022-5171118,5171230-5171669,5171752-5171907,5171995-5172162,5172244-5172384,5172661-5172891,5172975-5173088,5173190-5173360	AT4G08180.1  CDS  gene_syn ORP1C, OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1C, T12G13.20, T12G13_20  gene ORP1C  go_component cellular_component|GO:0005575||ND  go_process signal transduction|GO:0007165|15358268|ISS  go_process steroid metabolic process|GO:0008202||ISS  go_function oxysterol binding|GO:0008142||ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product ORP1C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1C); oxysterol binding / phosphoinositide binding  note OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1C (ORP1C); FUNCTIONS IN: phosphoinositide binding, oxysterol binding; INVOLVED IN: steroid metabolic process, signal transduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Oxysterol-binding protein (InterPro:IPR000648), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: ORP1D (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1D); oxysterol binding (TAIR:AT1G13170.1); Has 2131 Blast hits to 1984 proteins in 165 species: Archae - 0; Bacteria - 4; Metazoa - 1234; Fungi - 475; Plants - 169; Viruses - 0; Other Eukaryotes - 249 (source: NCBI BLink).  protein_id AT4G08180.1p  transcript_id AT4G08180.1  protein_id AT4G08180.1p  transcript_id AT4G08180.1  
At4g08180	chr4:005169727	0.0	W/5169727-5170296,5170384-5170740,5171022-5171118,5171233-5171669,5171752-5171907,5171995-5172162,5172244-5172384,5172661-5172891,5172975-5173088,5173190-5173360	AT4G08180.2  CDS  gene_syn ORP1C, OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1C, T12G13.20, T12G13_20  gene ORP1C  go_component cellular_component|GO:0005575||ND  go_process signal transduction|GO:0007165|15358268|ISS  go_process steroid metabolic process|GO:0008202||ISS  go_function oxysterol binding|GO:0008142||ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product ORP1C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1C); oxysterol binding / phosphoinositide binding  note OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1C (ORP1C); FUNCTIONS IN: phosphoinositide binding, oxysterol binding; INVOLVED IN: steroid metabolic process, signal transduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Oxysterol-binding protein (InterPro:IPR000648), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: ORP1D (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1D); oxysterol binding (TAIR:AT1G13170.1); Has 2138 Blast hits to 1982 proteins in 166 species: Archae - 0; Bacteria - 4; Metazoa - 1242; Fungi - 476; Plants - 169; Viruses - 3; Other Eukaryotes - 244 (source: NCBI BLink).  protein_id AT4G08180.2p  transcript_id AT4G08180.2  protein_id AT4G08180.2p  transcript_id AT4G08180.2  
At4g08180	chr4:005169727	0.0	W/5169727-5170296,5170384-5170740,5171022-5171118,5171233-5171669,5171752-5171907,5171995-5172162,5172244-5172384,5172661-5172891,5172975-5173097,5173199-5173360	AT4G08180.3  CDS  gene_syn ORP1C, OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1C, T12G13.20, T12G13_20  gene ORP1C  go_component cellular_component|GO:0005575||ND  go_process signal transduction|GO:0007165|15358268|ISS  go_process steroid metabolic process|GO:0008202||ISS  go_function oxysterol binding|GO:0008142||ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product ORP1C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1C); oxysterol binding / phosphoinositide binding  note OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1C (ORP1C); FUNCTIONS IN: phosphoinositide binding, oxysterol binding; INVOLVED IN: steroid metabolic process, signal transduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Oxysterol-binding protein (InterPro:IPR000648), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: ORP1D (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1D); oxysterol binding (TAIR:AT1G13170.1); Has 2111 Blast hits to 1955 proteins in 166 species: Archae - 0; Bacteria - 4; Metazoa - 1240; Fungi - 453; Plants - 167; Viruses - 3; Other Eukaryotes - 244 (source: NCBI BLink).  protein_id AT4G08180.3p  transcript_id AT4G08180.3  protein_id AT4G08180.3p  transcript_id AT4G08180.3  
At4g08190	chr4:005175361	0.0	C/5175361-5175476,5174760-5174849,5174523-5174700	AT4G08190.1  CDS  gene_syn T12G13.30, T12G13_30  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_function GTP binding|GO:0005525||IEA  go_component cellular_component|GO:0005575||ND  go_process small GTPase mediated signal transduction|GO:0007264||ISS  go_function GTP binding|GO:0005525||ISS  product Ras-related GTP-binding protein, putative  note Ras-related GTP-binding protein, putative; FUNCTIONS IN: GTP binding; INVOLVED IN: small GTPase mediated signal transduction; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Ras (InterPro:IPR013753); BEST Arabidopsis thaliana protein match is: ATRABA2D (HOARABIDOPSIS RAB GTPASE HOMOLOG A2D); GTP binding (TAIR:AT5G59150.1); Has 4440 Blast hits to 4440 proteins in 260 species: Archae - 0; Bacteria - 0; Metazoa - 2430; Fungi - 357; Plants - 841; Viruses - 0; Other Eukaryotes - 812 (source: NCBI BLink).  protein_id AT4G08190.1p  transcript_id AT4G08190.1  protein_id AT4G08190.1p  transcript_id AT4G08190.1  
At4g08200	chr4:005182099	0.0	W/5182099-5182707	AT4G08200.1  mRNA_TE_gene  pseudo  gene_syn T12G13.40, T12G13_40  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G43722.1); similar to Zinc transporter, putative [Asparagus officinalis] (GB:ABB55331.1); contains domain gb def: SI:dZ173M20.16 (Novel transposase) (PTHR22930:SF4); contains domain FAMILY NOT NAMED (PTHR22930)  
At4g08210	chr4:005183813	0.0	C/5183813-5185873	AT4G08210.1  CDS  gene_syn T12G13.50, T12G13_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G39530.1); Has 18349 Blast hits to 4945 proteins in 125 species: Archae - 0; Bacteria - 4; Metazoa - 102; Fungi - 27; Plants - 17909; Viruses - 0; Other Eukaryotes - 307 (source: NCBI BLink).  protein_id AT4G08210.1p  transcript_id AT4G08210.1  protein_id AT4G08210.1p  transcript_id AT4G08210.1  
At4g08220	chr4:005186610	0.0	W/5186610-5187572	AT4G08220.1  mRNA_TE_gene  pseudo  gene_syn T12G13.60, T12G13_60  note Transposable element gene, Mutator-like transposase family, has a 5.3e-67 P-value blast match to Q9SUF8 /145-308 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g08230	chr4:005189556	0.0	C/5189556-5189574,5188447-5188550,5188181-5188364,5188047-5188081	AT4G08230.1  CDS  gene_syn T12G13.70, T12G13_70  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; Has 13979 Blast hits to 5534 proteins in 565 species: Archae - 19; Bacteria - 2070; Metazoa - 5921; Fungi - 772; Plants - 3540; Viruses - 122; Other Eukaryotes - 1535 (source: NCBI BLink).  protein_id AT4G08230.1p  transcript_id AT4G08230.1  protein_id AT4G08230.1p  transcript_id AT4G08230.1  
At4g08240	chr4:005194713	0.0	W/5194713-5194877,5195214-5195282,5195580-5195756	AT4G08240.1  CDS  gene_syn T12G13.80, T12G13_80  go_component cytosol|GO:0005829|17925997|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G08240.1p  transcript_id AT4G08240.1  protein_id AT4G08240.1p  transcript_id AT4G08240.1  
At4g08240	chr4:005194713	0.0	W/5194713-5194877,5195214-5195282,5195580-5195756	AT4G08240.2  CDS  gene_syn T12G13.80, T12G13_80  go_component cytosol|GO:0005829|17925997|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G08240.2p  transcript_id AT4G08240.2  protein_id AT4G08240.2p  transcript_id AT4G08240.2  
At4g08250	chr4:005196787	0.0	W/5196787-5198238	AT4G08250.1  CDS  gene_syn T12G13.90, T12G13_90  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product scarecrow transcription factor family protein  note scarecrow transcription factor family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: SCR (SCARECROW); protein binding / protein homodimerization/ sequence-specific DNA binding / transcription factor (TAIR:AT3G54220.1); Has 1318 Blast hits to 1295 proteins in 186 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1316; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G08250.1p  transcript_id AT4G08250.1  protein_id AT4G08250.1p  transcript_id AT4G08250.1  
At4g08260	chr4:005200847	0.0	W/5200847-5200897,5201180-5201273,5201332-5201454,5201495-5201865	AT4G08260.1  CDS  gene_syn T12G13.100, T12G13_100  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT2G30020.1); Has 3040 Blast hits to 3022 proteins in 221 species: Archae - 0; Bacteria - 2; Metazoa - 1031; Fungi - 325; Plants - 1128; Viruses - 5; Other Eukaryotes - 549 (source: NCBI BLink).  protein_id AT4G08260.1p  transcript_id AT4G08260.1  protein_id AT4G08260.1p  transcript_id AT4G08260.1  
At4g08262	chr4:005204783	0.0	W/5204783-5210272	AT4G08262.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 9.5e-30 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At4g08263	chr4:005211838	0.0	C/5211838-5212137	AT4G08263.2  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast.  protein_id AT4G08263.2p  transcript_id AT4G08263.2  protein_id AT4G08263.2p  transcript_id AT4G08263.2  
At4g08263	chr4:005212028	0.0	C/5212028-5212137,5211604-5211823	AT4G08263.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related (TAIR:AT4G00610.1).  protein_id AT4G08263.1p  transcript_id AT4G08263.1  protein_id AT4G08263.1p  transcript_id AT4G08263.1  
At4g08264	chr4:005214179	0.0	C/5214179-5215615	AT4G08264.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to putative transposable element, similar to transposase, putative; blastp match of 51% identity and 1.2e-86 P-value to GP|13122426|dbj|BAB32907.1||AP003047 putative transposable element {Oryza sativa (japonica cultivar-group)}  
At4g08267	chr4:005216854	0.0	W/5216854-5216895,5217087-5217382,5217655-5217697	AT4G08267.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF659 (InterPro:IPR007021).  protein_id AT4G08267.1p  transcript_id AT4G08267.1  protein_id AT4G08267.1p  transcript_id AT4G08267.1  
At4g08270	chr4:005218105	0.0	W/5218105-5218404	AT4G08270.1  CDS  gene_syn T12G13.110, T12G13_110  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT3G47680.1); Has 25 Blast hits to 25 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G08270.1p  transcript_id AT4G08270.1  protein_id AT4G08270.1p  transcript_id AT4G08270.1  
At4g08275	chr4:005222994	0.0	W/5222994-5224001	AT4G08275.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.3e-99 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g08280	chr4:005230345	0.0	W/5230345-5230560,5230964-5231053,5231122-5231196	AT4G08280.1  CDS  gene_syn T12G13.120, T12G13_120  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin 2 (InterPro:IPR008554), Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); Has 214 Blast hits to 214 proteins in 65 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 2; Plants - 15; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT4G08280.1p  transcript_id AT4G08280.1  protein_id AT4G08280.1p  transcript_id AT4G08280.1  
At4g08290	chr4:005239088	0.0	W/5239088-5239281,5239436-5239498,5239635-5239751,5239826-5240072,5240171-5240329,5240404-5240555,5240639-5240861	AT4G08290.1  CDS  gene_syn T12G13.130, T12G13_130  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  product nodulin MtN21 family protein  note nodulin MtN21 family protein; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT2G39510.1); Has 1965 Blast hits to 1952 proteins in 311 species: Archae - 9; Bacteria - 731; Metazoa - 4; Fungi - 2; Plants - 631; Viruses - 0; Other Eukaryotes - 588 (source: NCBI BLink).  protein_id AT4G08290.1p  transcript_id AT4G08290.1  protein_id AT4G08290.1p  transcript_id AT4G08290.1  
At4g08290	chr4:005239088	0.0	W/5239088-5239281,5239436-5239498,5239635-5239751,5239826-5240072,5240171-5240398	AT4G08290.2  CDS  gene_syn T12G13.130, T12G13_130  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  product nodulin MtN21 family protein  note nodulin MtN21 family protein; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT2G39510.1); Has 792 Blast hits to 785 proteins in 77 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 2; Plants - 603; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT4G08290.2p  transcript_id AT4G08290.2  protein_id AT4G08290.2p  transcript_id AT4G08290.2  
At4g08300	chr4:005245024	0.0	W/5245024-5245211,5245326-5245388,5246283-5246399,5246507-5246756,5247438-5247596,5247681-5247832,5247961-5248153	AT4G08300.1  CDS  gene_syn T12G13.140, T12G13_140  go_component membrane|GO:0016020||IEA  product nodulin MtN21 family protein  note nodulin MtN21 family protein; LOCATED IN: membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT1G44800.1); Has 2087 Blast hits to 2074 proteins in 338 species: Archae - 27; Bacteria - 934; Metazoa - 4; Fungi - 2; Plants - 631; Viruses - 0; Other Eukaryotes - 489 (source: NCBI BLink).  protein_id AT4G08300.1p  transcript_id AT4G08300.1  protein_id AT4G08300.1p  transcript_id AT4G08300.1  
At4g08310	chr4:005251979	0.0	C/5251979-5252139,5251009-5251114,5250593-5250900,5250344-5250449,5249941-5250261,5249777-5249853,5249570-5249694,5249169-5249450,5249047-5249075	AT4G08310.1  CDS  gene_syn T12G13.150, T12G13_150  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G44780.2); Has 49375 Blast hits to 29075 proteins in 1129 species: Archae - 121; Bacteria - 2824; Metazoa - 24551; Fungi - 5614; Plants - 1764; Viruses - 442; Other Eukaryotes - 14059 (source: NCBI BLink).  protein_id AT4G08310.1p  transcript_id AT4G08310.1  protein_id AT4G08310.1p  transcript_id AT4G08310.1  
At4g08320	chr4:005252853	0.0	W/5252853-5252925,5253030-5253296,5253388-5253524,5253604-5253670,5253821-5253920,5254035-5254198,5254341-5254387,5254476-5254526,5254613-5254990	AT4G08320.2  CDS  gene_syn T28D5.10, T28D5_10  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product tetratricopeptide repeat (TPR)-containing protein  note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT4G12400.2); Has 10764 Blast hits to 7313 proteins in 535 species: Archae - 252; Bacteria - 2257; Metazoa - 2714; Fungi - 767; Plants - 890; Viruses - 0; Other Eukaryotes - 3884 (source: NCBI BLink).  protein_id AT4G08320.2p  transcript_id AT4G08320.2  protein_id AT4G08320.2p  transcript_id AT4G08320.2  
At4g08320	chr4:005252853	0.0	W/5252853-5252925,5253030-5253296,5253388-5253524,5253604-5253670,5253821-5253920,5254035-5254198,5254341-5254387,5254476-5254526,5254616-5254990	AT4G08320.1  CDS  gene_syn T28D5.10, T28D5_10  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product tetratricopeptide repeat (TPR)-containing protein  note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: PP5.2 (PROTEIN PHOSPHATASE 5.2); phosphoprotein phosphatase/ protein binding / protein serine/threonine phosphatase (TAIR:AT2G42810.2); Has 10699 Blast hits to 7271 proteins in 536 species: Archae - 250; Bacteria - 2236; Metazoa - 2691; Fungi - 766; Plants - 888; Viruses - 0; Other Eukaryotes - 3868 (source: NCBI BLink).  protein_id AT4G08320.1p  transcript_id AT4G08320.1  protein_id AT4G08320.1p  transcript_id AT4G08320.1  
At4g08330	chr4:005256410	0.0	C/5256410-5256525,5255384-5255762	AT4G08330.1  CDS  gene_syn T28D5.20, T28D5_20  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17705.1); Has 48 Blast hits to 48 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G08330.1p  transcript_id AT4G08330.1  protein_id AT4G08330.1p  transcript_id AT4G08330.1  
At4g08333	chr4:005257566	0.0	W/5257566-5261087	AT4G08333.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 3.9e-53 P-value blast match to Q9SHN7 /450-633 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g08336	chr4:005262299	0.0	W/5262299-5262867	AT4G08336.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42810.1); similar to hypothetical protein 26.t00076 [Brassica oleracea] (GB:ABD65021.1)  
At4g08340	chr4:005264215	0.0	C/5264215-5271148	AT4G08340.1  mRNA_TE_gene  pseudo  gene_syn T28D5.30, T28D5_30  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G35770.1); similar to cysteine-type peptidase [Arabidopsis thaliana] (TAIR:AT3G42820.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At4g08345	chr4:005268128	0.0	C/5268128-5268213	AT4G08345.1  tRNA  gene_syn 67085.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: TAG)  transcript_id AT4G08345.1  
At4g08347	chr4:005284798	0.0	W/5284798-5285580	AT4G08347.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At4g08350	chr4:005286351	0.0	W/5286351-5286684,5286864-5287099,5287185-5287331,5287458-5287619,5287691-5287774,5287969-5288039,5288145-5288502,5288599-5288718,5288833-5288930,5289012-5289060,5289194-5289346,5289429-5289572,5289660-5289762,5290016-5290174,5290252-5290297,5290382-5290476,5290576-5290654,5290891-5290945,5291061-5291178,5291258-5291395,5291536-5291630,5291827-5292072	AT4G08350.1  CDS  gene_syn GLOBAL TRANSCRIPTION FACTOR GROUP A2, GTA02, GTA2, T28D5.40, T28D5_40  gene GTA2  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process regulation of transcription from RNA polymerase II promoter|GO:0006357||IEA  go_process translation|GO:0006412||IEA  go_process positive regulation of RNA elongation from RNA polymerase II promoter|GO:0032968||IEA  go_function transcription elongation regulator activity|GO:0003711||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_function transcription factor activity|GO:0003700||ISS  product GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2); structural constituent of ribosome / transcription elongation regulator/ transcription factor  note GLOBAL TRANSCRIPTION FACTOR GROUP A2 (GTA2); FUNCTIONS IN: transcription elongation regulator activity, structural constituent of ribosome, transcription factor activity; INVOLVED IN: translation, regulation of transcription from RNA polymerase II promoter, positive regulation of RNA elongation from RNA polymerase II promoter; LOCATED IN: ribosome, intracellular; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Transcription antitermination protein, NusG, N-terminal (InterPro:IPR006645), Transcription elongation factor Spt5 (InterPro:IPR017071), Ribosomal protein L24/L26, conserved site (InterPro:IPR005825), KOW (InterPro:IPR005824), Supt5 repeat (InterPro:IPR005100); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome / transcription elongation regulator/ transcription initiation factor (TAIR:AT2G34210.1); Has 14306 Blast hits to 8900 proteins in 471 species: Archae - 78; Bacteria - 505; Metazoa - 6585; Fungi - 2279; Plants - 912; Viruses - 310; Other Eukaryotes - 3637 (source: NCBI BLink).  protein_id AT4G08350.1p  transcript_id AT4G08350.1  protein_id AT4G08350.1p  transcript_id AT4G08350.1  
At4g08351	chr4:005292394	0.0	C/5292394-5292579	AT4G08351.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G08351.1p  transcript_id AT4G08351.1  protein_id AT4G08351.1p  transcript_id AT4G08351.1  
At4g08360	chr4:005295933	0.0	W/5295933-5296029,5296226-5296308,5296702-5296947	AT4G08360.1  CDS  gene_syn T28D5.50, T28D5_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product KOW domain-containing protein  note KOW domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2); structural constituent of ribosome / transcription elongation regulator/ transcription factor (TAIR:AT4G08350.1); Has 97 Blast hits to 97 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 67; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G08360.1p  transcript_id AT4G08360.1  protein_id AT4G08360.1p  transcript_id AT4G08360.1  
At4g08370	chr4:005302974	0.0	C/5302974-5303314,5302614-5302823,5301962-5302463	AT4G08370.1  CDS  gene_syn T28D5.60, T28D5_60  go_component endomembrane system|GO:0012505||IEA  go_process plant-type cell wall organization|GO:0009664||IEA  go_function structural constituent of cell wall|GO:0005199||IEA  product proline-rich extensin-like family protein  note proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Extensin-like region (InterPro:IPR006706); Has 60259 Blast hits to 21817 proteins in 925 species: Archae - 154; Bacteria - 5478; Metazoa - 26558; Fungi - 8589; Plants - 10127; Viruses - 1638; Other Eukaryotes - 7715 (source: NCBI BLink).  protein_id AT4G08370.1p  transcript_id AT4G08370.1  protein_id AT4G08370.1p  transcript_id AT4G08370.1  
At4g08375	chr4:005303928	0.0	C/5303928-5308612	AT4G08375.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 6.4e-244 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element)  
At4g08380	chr4:005311093	0.0	C/5311093-5312406	AT4G08380.1  CDS  gene_syn T28D5.70, T28D5_70  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product proline-rich extensin-like family protein  note proline-rich extensin-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 139463 Blast hits to 30454 proteins in 1176 species: Archae - 228; Bacteria - 14899; Metazoa - 56960; Fungi - 22150; Plants - 22457; Viruses - 3917; Other Eukaryotes - 18852 (source: NCBI BLink).  protein_id AT4G08380.1p  transcript_id AT4G08380.1  protein_id AT4G08380.1p  transcript_id AT4G08380.1  
At4g08390	chr4:005314999	0.0	W/5314999-5315232,5315323-5315590,5315673-5315773,5315847-5315934,5316056-5316123,5316203-5316289,5316394-5316468,5316564-5316641,5316727-5316831,5317057-5317071	AT4G08390.1  CDS  gene_syn SAPX, STROMAL ASCORBATE PEROXIDASE, T28D5.80, T28D5_80  gene SAPX  function Encodes a chloroplastic stromal ascorbate peroxidase sAPX. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to oxidative stress|GO:0006979||IEA  go_component mitochondrion|GO:0005739|12954611|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component chloroplast stroma|GO:0009570|11997377|ISS  go_function L-ascorbate peroxidase activity|GO:0016688|11997377|ISS  go_function L-ascorbate peroxidase activity|GO:0016688||ISS  product SAPX (STROMAL ASCORBATE PEROXIDASE); L-ascorbate peroxidase  note STROMAL ASCORBATE PEROXIDASE (SAPX); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: response to oxidative stress; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: TAPX (THYLAKOIDAL ASCORBATE PEROXIDASE); L-ascorbate peroxidase (TAIR:AT1G77490.1); Has 9050 Blast hits to 6152 proteins in 898 species: Archae - 49; Bacteria - 1782; Metazoa - 1058; Fungi - 823; Plants - 2163; Viruses - 0; Other Eukaryotes - 3175 (source: NCBI BLink).  protein_id AT4G08390.1p  transcript_id AT4G08390.1  protein_id AT4G08390.1p  transcript_id AT4G08390.1  
At4g08390	chr4:005314999	0.0	W/5314999-5315232,5315323-5315590,5315673-5315773,5315847-5315934,5316056-5316123,5316203-5316289,5316394-5316468,5316564-5316641,5316727-5316831,5317057-5317071	AT4G08390.2  CDS  gene_syn SAPX, STROMAL ASCORBATE PEROXIDASE, T28D5.80, T28D5_80  gene SAPX  function Encodes a chloroplastic stromal ascorbate peroxidase sAPX. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to oxidative stress|GO:0006979||IEA  go_component mitochondrion|GO:0005739|12954611|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component chloroplast stroma|GO:0009570|11997377|ISS  go_function L-ascorbate peroxidase activity|GO:0016688|11997377|ISS  go_function L-ascorbate peroxidase activity|GO:0016688||ISS  product SAPX (STROMAL ASCORBATE PEROXIDASE); L-ascorbate peroxidase  note STROMAL ASCORBATE PEROXIDASE (SAPX); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: response to oxidative stress; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: TAPX (THYLAKOIDAL ASCORBATE PEROXIDASE); L-ascorbate peroxidase (TAIR:AT1G77490.1); Has 9050 Blast hits to 6152 proteins in 898 species: Archae - 49; Bacteria - 1782; Metazoa - 1058; Fungi - 823; Plants - 2163; Viruses - 0; Other Eukaryotes - 3175 (source: NCBI BLink).  protein_id AT4G08390.2p  transcript_id AT4G08390.2  protein_id AT4G08390.2p  transcript_id AT4G08390.2  
At4g08390	chr4:005315071	0.0	W/5315071-5315232,5315326-5315590,5315673-5315773,5315847-5315934,5316056-5316123,5316203-5316289,5316394-5316468,5316564-5316641,5316727-5316831,5317057-5317071	AT4G08390.3  CDS  gene_syn SAPX, STROMAL ASCORBATE PEROXIDASE, T28D5.80, T28D5_80  gene SAPX  function Encodes a chloroplastic stromal ascorbate peroxidase sAPX. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to oxidative stress|GO:0006979||IEA  go_component mitochondrion|GO:0005739|12954611|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component chloroplast stroma|GO:0009570|11997377|ISS  go_function L-ascorbate peroxidase activity|GO:0016688|11997377|ISS  go_function L-ascorbate peroxidase activity|GO:0016688||ISS  product SAPX (STROMAL ASCORBATE PEROXIDASE); L-ascorbate peroxidase  note STROMAL ASCORBATE PEROXIDASE (SAPX); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: response to oxidative stress; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: TAPX (THYLAKOIDAL ASCORBATE PEROXIDASE); L-ascorbate peroxidase (TAIR:AT1G77490.1); Has 8315 Blast hits to 5831 proteins in 868 species: Archae - 41; Bacteria - 1711; Metazoa - 848; Fungi - 574; Plants - 2157; Viruses - 0; Other Eukaryotes - 2984 (source: NCBI BLink).  protein_id AT4G08390.3p  transcript_id AT4G08390.3  protein_id AT4G08390.3p  transcript_id AT4G08390.3  
At4g08395	chr4:005319634	0.0	W/5319634-5319759,5319891-5319974,5320067-5320164,5320247-5320334,5320410-5320712	AT4G08395.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 12 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 0; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G08395.1p  transcript_id AT4G08395.1  protein_id AT4G08395.1p  transcript_id AT4G08395.1  
At4g08400	chr4:005323800	0.0	C/5323800-5325341	AT4G08400.1  CDS  gene_syn T28D5.90, T28D5_90  go_process plant-type cell wall organization|GO:0009664||IEA  go_function structural constituent of cell wall|GO:0005199||IEA  go_component cellular_component|GO:0005575||ND  product proline-rich extensin-like family protein  note proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Extensin-like region (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: proline-rich extensin-like family protein (TAIR:AT4G08410.1); Has 170720 Blast hits to 33529 proteins in 1271 species: Archae - 372; Bacteria - 21715; Metazoa - 69410; Fungi - 26481; Plants - 25023; Viruses - 4816; Other Eukaryotes - 22903 (source: NCBI BLink).  protein_id AT4G08400.1p  transcript_id AT4G08400.1  protein_id AT4G08400.1p  transcript_id AT4G08400.1  
At4g08405	chr4:005329393	0.0	W/5329393-5331457	AT4G08405.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.7e-11 P-value blast match to GB:CAA26446 ORF2 (Ty1_Copia-element) (Drosophila melanogaster)  
At4g08406	chr4:005331769	0.0	C/5331769-5331909	AT4G08406.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G08406.1p  transcript_id AT4G08406.1  protein_id AT4G08406.1p  transcript_id AT4G08406.1  
At4g08410	chr4:005339086	0.0	C/5339086-5341209	AT4G08410.1  CDS  gene_syn T28D5.100, T28D5_100  go_process plant-type cell wall organization|GO:0009664||IEA  go_function structural constituent of cell wall|GO:0005199||IEA  product proline-rich extensin-like family protein  note proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; EXPRESSED IN: shoot apex, embryo, sepal, hypocotyl, root; EXPRESSED DURING: 4 anthesis, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Extensin-like region (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: proline-rich extensin-like family protein (TAIR:AT5G06640.1); Has 231937 Blast hits to 34962 proteins in 1285 species: Archae - 504; Bacteria - 29692; Metazoa - 94882; Fungi - 35674; Plants - 33700; Viruses - 6597; Other Eukaryotes - 30888 (source: NCBI BLink).  protein_id AT4G08410.1p  transcript_id AT4G08410.1  protein_id AT4G08410.1p  transcript_id AT4G08410.1  
At4g08420	chr4:005342655	0.0	C/5342655-5343697	AT4G08420.1  mRNA_TE_gene  pseudo  gene_syn T28D5.110, T28D5_110  note Transposable element gene, Mutator-like transposase family, has a 8.0e-59 P-value blast match to Q9S9L1 /206-367 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g08430	chr4:005349833	0.0	C/5349833-5350436,5349456-5349580,5349096-5349365,5348381-5349003,5348203-5348311,5347396-5348091	AT4G08430.1  CDS  gene_syn C18G5.10, C18G5_10  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_component cellular_component|GO:0005575||ND  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product Ulp1 protease family protein  note Ulp1 protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1985 (InterPro:IPR015410), Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: Ulp1 protease family protein (TAIR:AT5G45570.1); Has 1292 Blast hits to 1093 proteins in 171 species: Archae - 7; Bacteria - 108; Metazoa - 383; Fungi - 94; Plants - 175; Viruses - 2; Other Eukaryotes - 523 (source: NCBI BLink).  protein_id AT4G08430.1p  transcript_id AT4G08430.1  protein_id AT4G08430.1p  transcript_id AT4G08430.1  
At4g08450	chr4:005365610	0.0	W/5365610-5366061,5366243-5367371,5367488-5367793,5367880-5368287,5369692-5371101	AT4G08450.1  CDS  gene_syn C18G5.30, C18G5_30  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G46450.1); Has 46554 Blast hits to 16113 proteins in 694 species: Archae - 55; Bacteria - 22346; Metazoa - 4194; Fungi - 940; Plants - 14164; Viruses - 202; Other Eukaryotes - 4653 (source: NCBI BLink).  protein_id AT4G08450.1p  transcript_id AT4G08450.1  protein_id AT4G08450.1p  transcript_id AT4G08450.1  
At4g08455	chr4:005375891	0.0	W/5375891-5376151,5376452-5376922	AT4G08455.1  CDS  go_function protein binding|GO:0005515||IEA  go_function protein binding|GO:0005515||ISS  product BTB/POZ domain-containing protein  note BTB/POZ domain-containing protein; FUNCTIONS IN: protein binding; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: speckle-type POZ protein-related (TAIR:AT1G01640.2); Has 5794 Blast hits to 5752 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 4844; Fungi - 52; Plants - 662; Viruses - 41; Other Eukaryotes - 195 (source: NCBI BLink).  protein_id AT4G08455.1p  transcript_id AT4G08455.1  protein_id AT4G08455.1p  transcript_id AT4G08455.1  
At4g08460	chr4:005377378	0.0	C/5377378-5378202	AT4G08460.1  CDS  gene_syn T15F16.1, T15F16_1  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G77770.2); Has 144 Blast hits to 135 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G08460.1p  transcript_id AT4G08460.1  protein_id AT4G08460.1p  transcript_id AT4G08460.1  
At4g08460	chr4:005377378	0.0	C/5377378-5378202	AT4G08460.2  CDS  gene_syn T15F16.1, T15F16_1  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G77770.2); Has 144 Blast hits to 135 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G08460.2p  transcript_id AT4G08460.2  protein_id AT4G08460.2p  transcript_id AT4G08460.2  
At4g08470	chr4:005386572	0.0	C/5386572-5387038,5386209-5386463,5385600-5385845,5385417-5385501,5385217-5385279,5384983-5385140,5384820-5384892,5384659-5384718,5384308-5384421,5384030-5384191	AT4G08470.1  CDS  gene_syn MAPKKK10, T15F16.2, T15F16_2  gene MAPKKK10  function member of MEKK subfamily  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product MAPKKK10; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note MAPKKK10; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: MEKK1 (MAP KINASE KINASE KINASE 1); DNA binding / MAP kinase kinase kinase/ kinase/ kinase binding / protein binding (TAIR:AT4G08500.1); Has 93216 Blast hits to 91830 proteins in 3166 species: Archae - 57; Bacteria - 7647; Metazoa - 41391; Fungi - 8263; Plants - 18302; Viruses - 492; Other Eukaryotes - 17064 (source: NCBI BLink).  protein_id AT4G08470.1p  transcript_id AT4G08470.1  protein_id AT4G08470.1p  transcript_id AT4G08470.1  
At4g08480	chr4:005389946	0.0	C/5389946-5391507,5389767-5389851,5389601-5389663,5389355-5389512,5389184-5389256,5389021-5389080,5388574-5388687,5388253-5388459	AT4G08480.1  CDS  gene_syn MAPKKK9, T15F16.3, T15F16_3  gene MAPKKK9  function member of MEKK subfamily  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product MAPKKK9; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note MAPKKK9; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: MEKK1 (MAP KINASE KINASE KINASE 1); DNA binding / MAP kinase kinase kinase/ kinase/ kinase binding / protein binding (TAIR:AT4G08500.1); Has 92568 Blast hits to 91217 proteins in 2771 species: Archae - 55; Bacteria - 7591; Metazoa - 40914; Fungi - 8313; Plants - 18032; Viruses - 490; Other Eukaryotes - 17173 (source: NCBI BLink).  protein_id AT4G08480.1p  transcript_id AT4G08480.1  protein_id AT4G08480.1p  transcript_id AT4G08480.1  
At4g08485	chr4:005394734	0.0	C/5394734-5394782,5394425-5394636	AT4G08485.1  CDS  function Encodes a defensin-like (DEFL) family protein.  product unknown protein  note BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08875.1); Has 17 Blast hits to 17 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G08485.1p  transcript_id AT4G08485.1  protein_id AT4G08485.1p  transcript_id AT4G08485.1  
At4g08490	chr4:005398502	0.0	C/5398502-5401591	AT4G08490.1  mRNA_TE_gene  pseudo  gene_syn T15F16.4, T15F16_4  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.7e-81 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g08500	chr4:005406005	0.0	C/5406005-5407062,5405747-5405831,5405551-5405613,5405306-5405463,5405131-5405203,5404973-5405032,5404604-5404717,5404272-5404487	AT4G08500.1  CDS  gene_syn ARAKIN, ATMEKK1, MAP KINASE KINASE KINASE 1, MAPKKK8, MEKK1, T15F16.5, T15F16_5  gene MEKK1  function Member of MAP Kinase Kinase gene family. Mediates cold, salt, cadmium and wounding stress signalling. Phosphorylates AtMEK1.  go_component nucleus|GO:0005634|17587183|IDA  go_process MAPKKK cascade|GO:0000165|9804171|IMP  go_process MAPKKK cascade|GO:0000165|9804171|IPI  go_process response to osmotic stress|GO:0006970|10556579|IEP  go_process response to osmotic stress|GO:0006970|10556579|IGI  go_process response to cold|GO:0009409|8570631|IEP  go_process response to wounding|GO:0009611|16211390|IDA  go_process response to salt stress|GO:0009651|10556579|IEP  go_process response to cadmium ion|GO:0046686||IGI  go_function DNA binding|GO:0003677|17587183|IDA  go_function MAP kinase kinase kinase activity|GO:0004709|16211390|IDA  go_function MAP kinase kinase kinase activity|GO:0004709|8570631|ISS  go_function protein binding|GO:0005515|16211390|IPI  go_function kinase activity|GO:0016301||ISS  go_function kinase binding|GO:0019900|17587183|IPI  product MEKK1 (MAP KINASE KINASE KINASE 1); DNA binding / MAP kinase kinase kinase/ kinase/ kinase binding / protein binding  note MAP KINASE KINASE KINASE 1 (MEKK1); FUNCTIONS IN: kinase binding, protein binding, MAP kinase kinase kinase activity, DNA binding, kinase activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: MAPKKK9; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT4G08480.1); Has 96803 Blast hits to 95145 proteins in 3196 species: Archae - 63; Bacteria - 8220; Metazoa - 42466; Fungi - 8577; Plants - 18887; Viruses - 632; Other Eukaryotes - 17958 (source: NCBI BLink).  protein_id AT4G08500.1p  transcript_id AT4G08500.1  protein_id AT4G08500.1p  transcript_id AT4G08500.1  
At4g08510	chr4:005411023	0.0	W/5411023-5411110,5411196-5411926,5412011-5412088,5412168-5412878,5412969-5413016	AT4G08510.1  CDS  gene_syn T15F16.13, T15F16_13  go_component chloroplast|GO:0009507|15028209|IDA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G36990.1); Has 823 Blast hits to 253 proteins in 86 species: Archae - 0; Bacteria - 87; Metazoa - 103; Fungi - 17; Plants - 41; Viruses - 0; Other Eukaryotes - 575 (source: NCBI BLink).  protein_id AT4G08510.1p  transcript_id AT4G08510.1  protein_id AT4G08510.1p  transcript_id AT4G08510.1  
At4g08520	chr4:005417887	0.0	W/5417887-5417901,5418743-5418902,5419108-5419255,5419343-5419420,5420053-5420137,5420236-5420295	AT4G08520.1  CDS  gene_syn T15F16.12, T15F16_12  go_component plasma membrane|GO:0005886|17644812|IDA  go_process transport|GO:0006810||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function protein binding|GO:0005515||IEA  go_component clathrin vesicle coat|GO:0030125||ISS  go_process intracellular protein transport|GO:0006886||ISS  product clathrin adaptor complex small chain family protein  note clathrin adaptor complex small chain family protein; FUNCTIONS IN: protein binding; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport; LOCATED IN: clathrin vesicle coat, plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, sigma subunit/coatomer, zeta subunit (InterPro:IPR000804), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: protein binding (TAIR:AT3G09800.1); Has 535 Blast hits to 535 proteins in 165 species: Archae - 0; Bacteria - 0; Metazoa - 242; Fungi - 97; Plants - 106; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT4G08520.1p  transcript_id AT4G08520.1  protein_id AT4G08520.1p  transcript_id AT4G08520.1  
At4g08530	chr4:005421926	0.0	W/5421926-5422237	AT4G08530.1  CDS  gene_syn T15F16.16, T15F16_16  function Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.  go_process lipid transport|GO:0006869||IEA  go_component cellular_component|GO:0005575||ND  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, petal, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); Has 18 Blast hits to 18 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G08530.1p  transcript_id AT4G08530.1  protein_id AT4G08530.1p  transcript_id AT4G08530.1  
At4g08540	chr4:005433760	0.0	W/5433760-5433839,5433911-5433998,5434066-5434239,5434321-5434392,5434472-5434549,5434631-5434755,5434854-5434926,5435030-5435091,5435192-5435575,5435734-5435824,5436132-5436326	AT4G08540.1  CDS  gene_syn T15F16.15, T15F16_15  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77890.1); Has 42 Blast hits to 42 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 28; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G08540.1p  transcript_id AT4G08540.1  protein_id AT4G08540.1p  transcript_id AT4G08540.1  
At4g08550	chr4:005444345	0.0	W/5444345-5445487,5445815-5445942,5446016-5446307,5446389-5446585,5446672-5446825	AT4G08550.1  CDS  gene_syn T15F16.10, T15F16_10  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  go_component cellular_component|GO:0005575||ND  product electron carrier/ protein disulfide oxidoreductase  note electron carrier/ protein disulfide oxidoreductase; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Glutaredoxin (InterPro:IPR002109), Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336), Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: glutaredoxin-related (TAIR:AT3G11920.1); Has 6847 Blast hits to 4400 proteins in 502 species: Archae - 6; Bacteria - 734; Metazoa - 2189; Fungi - 402; Plants - 381; Viruses - 156; Other Eukaryotes - 2979 (source: NCBI BLink).  protein_id AT4G08550.1p  transcript_id AT4G08550.1  protein_id AT4G08550.1p  transcript_id AT4G08550.1  
At4g08555	chr4:005448191	0.0	W/5448191-5448400	AT4G08555.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G08555.1p  transcript_id AT4G08555.1  protein_id AT4G08555.1p  transcript_id AT4G08555.1  
At4g08560	chr4:005450434	0.0	W/5450434-5450716,5451176-5451314,5451641-5451934,5452034-5452196,5452574-5452737,5452793-5453183	AT4G08560.1  CDS  gene_syn APUM15, Arabidopsis Pumilio 15, T15F16.9, T15F16_9  gene APUM15  go_component endomembrane system|GO:0012505||IEA  go_function RNA binding|GO:0003723||IEA  go_function binding|GO:0005488||IEA  product APUM15 (Arabidopsis Pumilio 15); RNA binding / binding  note Arabidopsis Pumilio 15 (APUM15); FUNCTIONS IN: RNA binding, binding; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding region (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Plant self-incompatibility S1 (InterPro:IPR010264), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: APUM14 (Arabidopsis Pumilio 14); RNA binding / binding (TAIR:AT5G43110.1); Has 1606 Blast hits to 1080 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 446; Fungi - 473; Plants - 325; Viruses - 0; Other Eukaryotes - 362 (source: NCBI BLink).  protein_id AT4G08560.1p  transcript_id AT4G08560.1  protein_id AT4G08560.1p  transcript_id AT4G08560.1  
At4g08570	chr4:005455819	0.0	C/5455819-5455975,5455123-5455418	AT4G08570.1  CDS  gene_syn T15F16.6, T15F16_6  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related  note heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121), Heavy-metal-associated, conserved site (InterPro:IPR017969); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related (TAIR:AT4G39700.1); Has 636 Blast hits to 600 proteins in 35 species: Archae - 0; Bacteria - 12; Metazoa - 2; Fungi - 0; Plants - 617; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G08570.1p  transcript_id AT4G08570.1  protein_id AT4G08570.1p  transcript_id AT4G08570.1  
At4g08580	chr4:005462190	0.0	W/5462190-5463385,5463607-5463718	AT4G08580.1  CDS  gene_syn T3F12.11  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Micro-fibrillar-associated 1, C-terminal (InterPro:IPR009730); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17900.1); Has 39042 Blast hits to 22601 proteins in 1140 species: Archae - 179; Bacteria - 2955; Metazoa - 18595; Fungi - 3264; Plants - 1100; Viruses - 245; Other Eukaryotes - 12704 (source: NCBI BLink).  protein_id AT4G08580.1p  transcript_id AT4G08580.1  protein_id AT4G08580.1p  transcript_id AT4G08580.1  
At4g08590	chr4:005466273	0.0	C/5466273-5466635,5465152-5465675,5464908-5465003,5464634-5464733,5464490-5464554,5464322-5464424,5464085-5464228	AT4G08590.2  CDS  gene_syn 15935, ORL1, ORTH-LIKE 1, ORTHL, ORTHRUS-LIKE, ORTHRUS-LIKE 1, T3F12.10, VARIANT IN METHYLATION 6, VIM6  gene ORTHL  go_component cytoplasm|GO:0005737|17892444|IDA  go_process protein ubiquitination|GO:0016567|18643997|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|18643997|IDA  go_function zinc ion binding|GO:0008270||ISS  product ORTHL (ORTHRUS-LIKE); ubiquitin-protein ligase/ zinc ion binding  note ORTHRUS-LIKE (ORTHL); FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: protein ubiquitination; LOCATED IN: cytoplasm; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: SRA-YDG (InterPro:IPR003105), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: VIM1 (VARIANT IN METHYLATION 1); DNA binding / chromatin binding / double-stranded methylated DNA binding / histone binding / methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding / ubiquitin-protein ligase (TAIR:AT1G57820.1); Has 2131 Blast hits to 2081 proteins in 172 species: Archae - 0; Bacteria - 8; Metazoa - 1503; Fungi - 96; Plants - 330; Viruses - 5; Other Eukaryotes - 189 (source: NCBI BLink).  protein_id AT4G08590.2p  transcript_id AT4G08590.2  protein_id AT4G08590.2p  transcript_id AT4G08590.2  
At4g08590	chr4:005466273	0.0	C/5466273-5466635,5465152-5465675,5464908-5465006,5464634-5464733,5464490-5464554,5464322-5464424,5464085-5464228	AT4G08590.1  CDS  gene_syn 15935, ORL1, ORTH-LIKE 1, ORTHL, ORTHRUS-LIKE, ORTHRUS-LIKE 1, T3F12.10, VARIANT IN METHYLATION 6, VIM6  gene ORTHL  go_component cytoplasm|GO:0005737|17892444|IDA  go_process protein ubiquitination|GO:0016567|18643997|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|18643997|IDA  go_function zinc ion binding|GO:0008270||ISS  product ORTHL (ORTHRUS-LIKE); ubiquitin-protein ligase/ zinc ion binding  note ORTHRUS-LIKE (ORTHL); FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: protein ubiquitination; LOCATED IN: cytoplasm; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: SRA-YDG (InterPro:IPR003105), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: VIM1 (VARIANT IN METHYLATION 1); DNA binding / chromatin binding / double-stranded methylated DNA binding / histone binding / methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding / ubiquitin-protein ligase (TAIR:AT1G57820.2); Has 2130 Blast hits to 2080 proteins in 171 species: Archae - 0; Bacteria - 8; Metazoa - 1503; Fungi - 96; Plants - 328; Viruses - 5; Other Eukaryotes - 190 (source: NCBI BLink).  protein_id AT4G08590.1p  transcript_id AT4G08590.1  protein_id AT4G08590.1p  transcript_id AT4G08590.1  
At4g08593	chr4:005469345	0.0	W/5469345-5469441,5469617-5469679,5469767-5470021,5470069-5470466	AT4G08593.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45095.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G08593.1p  transcript_id AT4G08593.1  protein_id AT4G08593.1p  transcript_id AT4G08593.1  
At4g08596	chr4:005475880	0.0	C/5475880-5477918	AT4G08596.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, FAR1 -related protein, temporary automated functional assignment; blastp match of 63% identity and 8.3e-53 P-value to GP|23237937|dbj|BAC16510.1||AP005198 transposase-like {Oryza sativa (japonica cultivar-group)}  
At4g08598	chr4:005480552	0.0	C/5480552-5482514	AT4G08598.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 1.0e-24 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At4g08599	chr4:005483050	0.0	C/5483050-5483205	AT4G08599.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G28720; unknown protein  
At4g08600	chr4:005485735	0.0	W/5485735-5488998	AT4G08600.1  mRNA_TE_gene  pseudo  gene_syn T3F12.9, T3F12_9  note Transposable element gene, hypothetical protein, contains Pfam profile PF03384: Drosophila protein of unknown function, DUF287  
At4g08602	chr4:005489259	0.0	C/5489259-5489974	AT4G08602.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07523.1)  
At4g08610	chr4:005491697	0.0	C/5491697-5494054	AT4G08610.1  mRNA_TE_gene  pseudo  gene_syn T3F12.8, T3F12_8  note Transposable element gene, Mutator-like transposase family, has a 1.9e-87 P-value blast match to O22278 /203-375 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g08620	chr4:005500480	0.0	W/5500480-5500785,5500884-5500932,5501038-5501420,5501519-5501584,5501673-5501786,5501900-5502016,5502110-5502236,5502363-5502649,5502743-5502933,5503697-5503782,5503888-5503964,5505836-5505982	AT4G08620.1  CDS  gene_syn SULPHATE TRANSPORTER 1;1, SULTR1.2, SULTR1;1  gene SULTR1;1  function High affinity sulfate transporter. Contains STAS domain, essential for sulfur uptake function. Expressed in roots and guard cells. Up-regulated by sulfur deficiency. Down-regulated by cytokinin. Localized to the plasma membrane.  go_component plasma membrane|GO:0005886|15718229|IDA  go_process sulfate transport|GO:0008272|15718229|IGI  go_process sulfate transport|GO:0008272|18400935|IEP  go_function sulfate transmembrane transporter activity|GO:0015116|15718229|IGI  go_function sulfate transmembrane transporter activity|GO:0015116||ISS  product SULTR1;1 (SULPHATE TRANSPORTER 1;1); sulfate transmembrane transporter  note SULPHATE TRANSPORTER 1;1 (SULTR1;1); FUNCTIONS IN: sulfate transmembrane transporter activity; INVOLVED IN: sulfate transport; LOCATED IN: plasma membrane; EXPRESSED IN: root cortex, root epidermis, root hair, root, guard cell; CONTAINS InterPro DOMAIN/s: Sulphate transporter (InterPro:IPR011547), Sulphate transporter/antisigma-factor antagonist STAS (InterPro:IPR002645), Sulphate anion transporter, conserved site (InterPro:IPR018045), Sulphate anion transporter (InterPro:IPR001902); BEST Arabidopsis thaliana protein match is: SULTR1;2 (SULFATE TRANSPORTER 1;2); sulfate transmembrane transporter (TAIR:AT1G78000.2); Has 6614 Blast hits to 6554 proteins in 1086 species: Archae - 32; Bacteria - 3414; Metazoa - 995; Fungi - 270; Plants - 324; Viruses - 0; Other Eukaryotes - 1579 (source: NCBI BLink).  protein_id AT4G08620.1p  transcript_id AT4G08620.1  protein_id AT4G08620.1p  transcript_id AT4G08620.1  
At4g08630	chr4:005511657	0.0	C/5511657-5511959,5511412-5511567,5511176-5511331,5510926-5511078,5510617-5510766,5509920-5510260,5509755-5509833,5509634-5509675,5509390-5509452,5509224-5509301,5509148-5509175,5508789-5508836,5508577-5508668,5508425-5508485,5507941-5508272,5507762-5507891,5507635-5507676,5507426-5507466,5507226-5507352,5506998-5507113	AT4G08630.1  CDS  gene_syn T3F12.6, T3F12_6  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48860.2); Has 1315 Blast hits to 578 proteins in 129 species: Archae - 0; Bacteria - 25; Metazoa - 302; Fungi - 141; Plants - 119; Viruses - 2; Other Eukaryotes - 726 (source: NCBI BLink).  protein_id AT4G08630.1p  transcript_id AT4G08630.1  protein_id AT4G08630.1p  transcript_id AT4G08630.1  
At4g08640	chr4:005513313	0.0	W/5513313-5513447,5513570-5513703,5513793-5513926,5514062-5514174	AT4G08640.1  CDS  gene_syn T3F12.5, T3F12_5  go_process cellular protein metabolic process|GO:0044267||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  product ATP binding / protein binding  note ATP binding / protein binding; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: cellular protein metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423); BEST Arabidopsis thaliana protein match is: chaperonin, putative (TAIR:AT3G03960.1); Has 309 Blast hits to 309 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 141; Fungi - 81; Plants - 23; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT4G08640.1p  transcript_id AT4G08640.1  protein_id AT4G08640.1p  transcript_id AT4G08640.1  
At4g08645	chr4:005514498	0.0	C/5514498-5515676	AT4G08645.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At4g08650	chr4:005521748	0.0	W/5521748-5525857	AT4G08650.1  mRNA_TE_gene  pseudo  gene_syn T3F12.4, T3F12_4  note Transposable element gene, hypothetical protein  
At4g08652	chr4:005526392	0.0	C/5526392-5526701	AT4G08652.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35030.1); contains InterPro domain Protein of unknown function DUF730; (InterPro:IPR007989)  
At4g08655	chr4:005528532	0.0	W/5528532-5529062	AT4G08655.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G30480.1); similar to GRF zinc finger containing protein [Brassica oleracea] (GB:ABD64950.1)  
At4g08657	chr4:005529763	0.0	C/5529763-5530302	AT4G08657.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g08660	chr4:005532580	0.0	C/5532580-5535387	AT4G08660.1  mRNA_TE_gene  pseudo  gene_syn T3F12.3, T3F12_3  note Transposable element gene, Mutator-like transposase family, has a 3.0e-74 P-value blast match to O22273 /233-373 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g08670	chr4:005537835	0.0	C/5537835-5538210,5537681-5537722,5536765-5536973	AT4G08670.1  CDS  gene_syn T3F12.2, T3F12_2  go_process lipid transport|GO:0006869||IEA  go_function lipid binding|GO:0008289||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT1G36150.1); Has 1547 Blast hits to 633 proteins in 111 species: Archae - 0; Bacteria - 78; Metazoa - 109; Fungi - 75; Plants - 372; Viruses - 16; Other Eukaryotes - 897 (source: NCBI BLink).  protein_id AT4G08670.1p  transcript_id AT4G08670.1  protein_id AT4G08670.1p  transcript_id AT4G08670.1  
At4g08680	chr4:005542431	0.0	C/5542431-5544862	AT4G08680.1  mRNA_TE_gene  pseudo  gene_syn T3F12.12, T3F12_12  note Transposable element gene, Mutator-like transposase family, has a 1.4e-46 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At4g08685	chr4:005550563	0.0	W/5550563-5550716,5550934-5551259	AT4G08685.1  CDS  gene_syn SAH7  gene SAH7  function Encodes a protein, expressed in leaves, with similarity to pollen allergens.  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SAH7  note SAH7; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen and extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: pollen Ole e 1 allergen and extensin family protein (TAIR:AT1G78040.2); Has 195 Blast hits to 195 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 195; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G08685.1p  transcript_id AT4G08685.1  protein_id AT4G08685.1p  transcript_id AT4G08685.1  
At4g08690	chr4:005552648	0.0	C/5552648-5552713,5552405-5552581,5552232-5552330,5551912-5552154,5551521-5551841	AT4G08690.1  CDS  gene_syn T32A17.1  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  note SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT1G22180.2); Has 1877 Blast hits to 1877 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 772; Fungi - 407; Plants - 461; Viruses - 0; Other Eukaryotes - 237 (source: NCBI BLink).  protein_id AT4G08690.1p  transcript_id AT4G08690.1  protein_id AT4G08690.1p  transcript_id AT4G08690.1  
At4g08690	chr4:005552648	0.0	C/5552648-5552713,5552405-5552581,5552232-5552330,5551912-5552154,5551521-5551841	AT4G08690.2  CDS  gene_syn T32A17.1  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  note SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT1G22180.2); Has 1877 Blast hits to 1877 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 772; Fungi - 407; Plants - 461; Viruses - 0; Other Eukaryotes - 237 (source: NCBI BLink).  protein_id AT4G08690.2p  transcript_id AT4G08690.2  protein_id AT4G08690.2p  transcript_id AT4G08690.2  
At4g08691	chr4:005555861	0.0	C/5555861-5556354,5555662-5555671	AT4G08691.1  CDS  product unknown protein  note unknown protein; Has 17 Blast hits to 17 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G08691.1p  transcript_id AT4G08691.1  protein_id AT4G08691.1p  transcript_id AT4G08691.1  
At4g08692	chr4:005558042	0.0	C/5558042-5558705	AT4G08692.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g08695	chr4:005565094	0.0	C/5565094-5565606	AT4G08695.1  pseudogenic_transcript  pseudo  note pseudogene, similar to ribosomal protein L2, blastp match of 66% identity and 2.2e-07 P-value to GP|11022825|gb|AAG26142.1||AF123794 ribosomal protein L2 {Illicium parviflorum}  
At4g08700	chr4:005567283	0.0	C/5567283-5567286,5565998-5567079	AT4G08700.1  CDS  gene_syn ATPUP13, T32A17.10, T32A17_10  gene ATPUP13  function Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.  go_component membrane|GO:0016020|10662864|TAS  go_process purine transport|GO:0006863|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345||ISS  product ATPUP13; purine transmembrane transporter  note ATPUP13; FUNCTIONS IN: purine transmembrane transporter activity; INVOLVED IN: purine transport; LOCATED IN: membrane; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: ATPUP12; purine transmembrane transporter (TAIR:AT5G41160.1); Has 316 Blast hits to 309 proteins in 57 species: Archae - 2; Bacteria - 27; Metazoa - 6; Fungi - 41; Plants - 219; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT4G08700.1p  transcript_id AT4G08700.1  protein_id AT4G08700.1p  transcript_id AT4G08700.1  
At4g08710	chr4:005567742	0.0	W/5567742-5570572	AT4G08710.1  mRNA_TE_gene  pseudo  gene_syn T32A17.20, T32A17_20  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G23480.1); similar to PREDICTED: hypothetical protein [Rattus norve (GB:XP_001078517.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048)  
At4g08720	chr4:005571075	0.0	C/5571075-5574725	AT4G08720.1  mRNA_TE_gene  pseudo  gene_syn T32A17.30, T32A17_30  note Transposable element gene, Mutator-like transposase family, has a 7.6e-65 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g08730	chr4:005578600	0.0	C/5578600-5578779,5578311-5578462,5577390-5577624	AT4G08730.1  CDS  gene_syn T32A17.40, T32A17_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; Has 46 Blast hits to 46 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 2; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G08730.1p  transcript_id AT4G08730.1  protein_id AT4G08730.1p  transcript_id AT4G08730.1  
At4g08740	chr4:005579034	0.0	W/5579034-5579102,5579173-5579745	AT4G08740.1  CDS  gene_syn T32A17.50, T32A17_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G08740.1p  transcript_id AT4G08740.1  protein_id AT4G08740.1p  transcript_id AT4G08740.1  
At4g08750	chr4:005580236	0.0	C/5580236-5583144	AT4G08750.1  mRNA_TE_gene  pseudo  gene_syn T32A17.60, T32A17_60  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G08760.1); similar to Os08g0192900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061178.1); similar to protein localized in the nucleoli of pea nuclei; ORF; putative (GB:AAA74208.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)  
At4g08760	chr4:005590949	0.0	C/5590949-5591133,5590509-5590689,5589959-5589964,5588369-5588604,5587590-5587713,5587065-5587113,5586793-5586866,5586569-5586682,5585191-5585494,5584739-5585031	AT4G08760.1  CDS  gene_syn T32A17.70, T32A17_70  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ATNUC-L1; nucleic acid binding / nucleotide binding (TAIR:AT1G48920.1); Has 22 Blast hits to 22 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G08760.1p  transcript_id AT4G08760.1  protein_id AT4G08760.1p  transcript_id AT4G08760.1  
At4g08765	chr4:005591698	0.0	W/5591698-5596278	AT4G08765.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 5.2e-158 P-value blast match to GB:AAB82754 retrofit (TY1_Copia-element) (Oryza longistaminata)  
At4g08770	chr4:005600056	0.0	C/5600056-5600262,5599110-5599301,5598839-5599007,5598259-5598731	AT4G08770.1  CDS  gene_syn T32A17.80, T32A17_80  go_component vacuole|GO:0005773|15539469|IDA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: vacuole; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT4G08780.1); Has 2824 Blast hits to 2808 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 30; Plants - 2762; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT4G08770.1p  transcript_id AT4G08770.1  protein_id AT4G08770.1p  transcript_id AT4G08770.1  
At4g08780	chr4:005604153	0.0	W/5604153-5604359,5607210-5607401,5607481-5607649,5607730-5608202	AT4G08780.1  CDS  gene_syn T32A17.90, T32A17_90  go_component vacuole|GO:0005773|15539469|IDA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: vacuole; EXPRESSED IN: embryo, hypocotyl, flower, root, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT4G08770.1); Has 2831 Blast hits to 2817 proteins in 188 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 23; Plants - 2770; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT4G08780.1p  transcript_id AT4G08780.1  protein_id AT4G08780.1p  transcript_id AT4G08780.1  
At4g08790	chr4:005610933	0.0	C/5610933-5611118,5610223-5610359,5610015-5610140,5609825-5609883,5609325-5609437,5608987-5609079,5608791-5608893,5608604-5608686,5608489-5608512	AT4G08790.1  CDS  gene_syn T32A17.100, T32A17_100  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds|GO:0016810||IEA  go_process nitrogen compound metabolic process|GO:0006807||ISS  go_function nitrilase activity|GO:0000257||ISS  product nitrilase, putative  note nitrilase, putative; FUNCTIONS IN: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, nitrilase activity; INVOLVED IN: response to cadmium ion, nitrogen compound metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (InterPro:IPR003010); BEST Arabidopsis thaliana protein match is: carbon-nitrogen hydrolase family protein (TAIR:AT5G12040.1); Has 6875 Blast hits to 6852 proteins in 1214 species: Archae - 137; Bacteria - 3913; Metazoa - 416; Fungi - 255; Plants - 176; Viruses - 9; Other Eukaryotes - 1969 (source: NCBI BLink).  protein_id AT4G08790.1p  transcript_id AT4G08790.1  protein_id AT4G08790.1p  transcript_id AT4G08790.1  
At4g08800	chr4:005614134	0.0	W/5614134-5614209,5614319-5614359,5614455-5614524,5614599-5614627,5614706-5614747,5614835-5614925,5615008-5615065,5615141-5615202,5615286-5615349,5615427-5615511,5615591-5615717,5615807-5615919	AT4G08800.1  CDS  gene_syn T32A17.110, T32A17_110  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ckl5 (Casein Kinase I-like 5); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT2G19470.1); Has 37149 Blast hits to 37077 proteins in 1265 species: Archae - 7; Bacteria - 4645; Metazoa - 15626; Fungi - 3636; Plants - 4695; Viruses - 316; Other Eukaryotes - 8224 (source: NCBI BLink).  protein_id AT4G08800.1p  transcript_id AT4G08800.1  protein_id AT4G08800.1p  transcript_id AT4G08800.1  
At4g08810	chr4:005616204	0.0	C/5616204-5617862	AT4G08810.1  CDS  gene_syn SUB1, T32A17.120, T32A17_120  gene SUB1  function Calcium binding protein involved in cryptochrome and phytochrome coaction  go_component nuclear envelope-endoplasmic reticulum network|GO:0042175|11161203|IDA  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509|11161203|IDA  product SUB1; calcium ion binding  note SUB1; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: nuclear envelope-endoplasmic reticulum network; EXPRESSED IN: guard cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12700.1); Has 74 Blast hits to 74 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G08810.1p  transcript_id AT4G08810.1  protein_id AT4G08810.1p  transcript_id AT4G08810.1  
At4g08820	chr4:005621764	0.0	W/5621764-5623209	AT4G08820.1  mRNA_TE_gene  pseudo  gene_syn T32A17.130, T32A17_130  note Transposable element gene, similar to nucleic acid binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G01050.1); similar to Zinc finger, CCHC-type; Endonuclease/exonuclease/phosphatase [Medicago truncatula] (GB:ABE79649.1)  
At4g08830	chr4:005623753	0.0	W/5623753-5627210	AT4G08830.1  mRNA_TE_gene  pseudo  gene_syn T32A17.140, T32A17_140  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 4.0e-49 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At4g08840	chr4:005631298	0.0	W/5631298-5632286,5632732-5632894,5632986-5633149,5633354-5633603,5633675-5633779	AT4G08840.1  CDS  gene_syn APUM11, Arabidopsis Pumilio 11, T32A17.150, T32A17_150  gene APUM11  go_function RNA binding|GO:0003723||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product APUM11 (Arabidopsis Pumilio 11); RNA binding / binding  note Arabidopsis Pumilio 11 (APUM11); FUNCTIONS IN: RNA binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding region (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: APUM9 (Arabidopsis Pumilio 9); RNA binding / binding (TAIR:AT1G35730.1); Has 1904 Blast hits to 1183 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 527; Fungi - 559; Plants - 354; Viruses - 0; Other Eukaryotes - 464 (source: NCBI BLink).  protein_id AT4G08840.1p  transcript_id AT4G08840.1  protein_id AT4G08840.1p  transcript_id AT4G08840.1  
At4g08850	chr4:005637467	0.0	C/5637467-5640496	AT4G08850.2  CDS  gene_syn T32A17.160, T32A17_160  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_function kinase activity|GO:0016301||ISS  product kinase  note kinase; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine protein kinase, active site (InterPro:IPR008266); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT1G35710.1); Has 177468 Blast hits to 93054 proteins in 3194 species: Archae - 101; Bacteria - 13250; Metazoa - 78129; Fungi - 6409; Plants - 59062; Viruses - 223; Other Eukaryotes - 20294 (source: NCBI BLink).  protein_id AT4G08850.2p  transcript_id AT4G08850.2  protein_id AT4G08850.2p  transcript_id AT4G08850.2  
At4g08850	chr4:005637649	0.0	C/5637649-5640496,5636693-5636982	AT4G08850.1  CDS  gene_syn T32A17.160, T32A17_160  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_function kinase activity|GO:0016301||ISS  product kinase  note kinase; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase, active site (InterPro:IPR008266), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT1G35710.1); Has 186964 Blast hits to 105464 proteins in 3465 species: Archae - 121; Bacteria - 14363; Metazoa - 83128; Fungi - 7708; Plants - 58474; Viruses - 412; Other Eukaryotes - 22758 (source: NCBI BLink).  protein_id AT4G08850.1p  transcript_id AT4G08850.1  protein_id AT4G08850.1p  transcript_id AT4G08850.1  
At4g08860	chr4:005643952	0.0	W/5643952-5645045	AT4G08860.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to nucleic acid binding / ribonuclease H [Arabidopsis thaliana] (TAIR:AT2G27870.1); similar to Ribonuclease H [Medicago truncatula] (GB:ABE81233.1); similar to Ribonuclease H [Medicago truncatula] (GB:ABD28505.1); contains InterPro domain Ribonuclease H; (InterPro:IPR002156); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)  
At4g08870	chr4:005648535	0.0	C/5648535-5648693,5648273-5648432,5647951-5648084,5647627-5647836,5647417-5647545	AT4G08870.2  CDS  gene_syn T3H13.10, T3H13_10  function Encodes one of the two arginase in the genome. Gene expression is enhanced by methyl jasmonate treatment.  go_component mitochondrion|GO:0005739|18385124|IDA  go_process polyamine metabolic process|GO:0006595||ISS  go_process response to jasmonic acid stimulus|GO:0009753|18425591|IEP  go_function arginase activity|GO:0004053|18425591|IGI  go_function agmatinase activity|GO:0008783||ISS  product arginase, putative  note arginase, putative; FUNCTIONS IN: arginase activity, agmatinase activity; INVOLVED IN: response to jasmonic acid stimulus, polyamine metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: sepal vascular system, cotyledon vascular system, root vascular system, style, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Ureohydrolase (InterPro:IPR006035); BEST Arabidopsis thaliana protein match is: arginase (TAIR:AT4G08900.1); Has 4239 Blast hits to 4239 proteins in 738 species: Archae - 124; Bacteria - 1762; Metazoa - 56; Fungi - 109; Plants - 37; Viruses - 0; Other Eukaryotes - 2151 (source: NCBI BLink).  protein_id AT4G08870.2p  transcript_id AT4G08870.2  protein_id AT4G08870.2p  transcript_id AT4G08870.2  
At4g08870	chr4:005648535	0.0	C/5648535-5648693,5648273-5648432,5647951-5648084,5647627-5647836,5647435-5647545,5646654-5646914	AT4G08870.1  CDS  gene_syn T3H13.10, T3H13_10  function Encodes one of the two arginase in the genome. Gene expression is enhanced by methyl jasmonate treatment.  go_component mitochondrion|GO:0005739|18385124|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process polyamine metabolic process|GO:0006595||ISS  go_process response to jasmonic acid stimulus|GO:0009753|18425591|IEP  go_function arginase activity|GO:0004053|18425591|IGI  go_function agmatinase activity|GO:0008783||ISS  product arginase, putative  note arginase, putative; FUNCTIONS IN: arginase activity, agmatinase activity; INVOLVED IN: response to jasmonic acid stimulus, polyamine metabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: sepal vascular system, cotyledon vascular system, root vascular system, style, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Ureohydrolase (InterPro:IPR006035); BEST Arabidopsis thaliana protein match is: arginase (TAIR:AT4G08900.1); Has 6322 Blast hits to 6318 proteins in 966 species: Archae - 160; Bacteria - 2532; Metazoa - 352; Fungi - 252; Plants - 39; Viruses - 0; Other Eukaryotes - 2987 (source: NCBI BLink).  protein_id AT4G08870.1p  transcript_id AT4G08870.1  protein_id AT4G08870.1p  transcript_id AT4G08870.1  
At4g08871	chr4:005651122	0.0	W/5651122-5651622	AT4G08871.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 1.2e-15 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota)  
At4g08872	chr4:005655273	0.0	W/5655273-5655963	AT4G08872.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 7.0e-16 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At4g08869	chr4:005657617	0.0	C/5657617-5657665,5657276-5657508	AT4G08869.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08875.1); Has 17 Blast hits to 17 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G08869.1p  transcript_id AT4G08869.1  protein_id AT4G08869.1p  transcript_id AT4G08869.1  
At4g08867	chr4:005660226	0.0	W/5660226-5660645	AT4G08867.1  CDS  product unknown protein  note unknown protein; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G08867.1p  transcript_id AT4G08867.1  protein_id AT4G08867.1p  transcript_id AT4G08867.1  
At4g08873	chr4:005663400	0.0	W/5663400-5664119	AT4G08873.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.4e-21 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g08868	chr4:005668607	0.0	W/5668607-5669047	AT4G08868.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G08868.1p  transcript_id AT4G08868.1  protein_id AT4G08868.1p  transcript_id AT4G08868.1  
At4g08874	chr4:005673276	0.0	C/5673276-5673710	AT4G08874.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: beta-galactosidase (TAIR:AT3G43580.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G08874.1p  transcript_id AT4G08874.1  protein_id AT4G08874.1p  transcript_id AT4G08874.1  
At4g08875	chr4:005674172	0.0	C/5674172-5674220,5673818-5674050	AT4G08875.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08869.1); Has 17 Blast hits to 17 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G08875.1p  transcript_id AT4G08875.1  protein_id AT4G08875.1p  transcript_id AT4G08875.1  
At4g08876	chr4:005677395	0.0	W/5677395-5677454,5677597-5677728	AT4G08876.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related  note pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: MEE51 (maternal effect embryo arrest 51); diphosphate-fructose-6-phosphate 1-phosphotransferase (TAIR:AT4G04040.1); Has 30 Blast hits to 30 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G08876.1p  transcript_id AT4G08876.1  protein_id AT4G08876.1p  transcript_id AT4G08876.1  
At4g08878	chr4:005683180	0.0	W/5683180-5684022	AT4G08878.1  CDS  go_component cellular_component|GO:0005575||ND  go_process phosphate transport|GO:0006817||ISS  go_function inorganic phosphate transmembrane transporter activity|GO:0005315||ISS  product inorganic phosphate transporter, putative  note inorganic phosphate transporter, putative; FUNCTIONS IN: inorganic phosphate transmembrane transporter activity; INVOLVED IN: phosphate transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: PHT6; carbohydrate transmembrane transporter/ inorganic phosphate transmembrane transporter/ phosphate transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT5G43340.1); Has 13132 Blast hits to 13129 proteins in 1048 species: Archae - 294; Bacteria - 10421; Metazoa - 609; Fungi - 842; Plants - 421; Viruses - 0; Other Eukaryotes - 545 (source: NCBI BLink).  protein_id AT4G08878.1p  transcript_id AT4G08878.1  protein_id AT4G08878.1p  transcript_id AT4G08878.1  
At4g08880	chr4:005685011	0.0	W/5685011-5691313	AT4G08880.1  mRNA_TE_gene  pseudo  gene_syn T3H13.8, T3H13_8  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G27780.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G34740.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G42730.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD65034.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653); contains InterPro domain Tetracyclin repressor-like, C-terminal; (InterPro:IPR011075)  
At4g08890	chr4:005692638	0.0	C/5692638-5696994	AT4G08890.1  mRNA_TE_gene  pseudo  gene_syn T3H13.11, T3H13_11  note Transposable element gene, Mutator-like transposase family, has a 5.6e-82 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g08895	chr4:005697896	0.0	W/5697896-5697961,5698039-5698153,5698249-5698466,5698547-5698615	AT4G08895.1  CDS  go_component membrane|GO:0016020|11152613|ISS  product inorganic phosphate transporter family protein  note inorganic phosphate transporter family protein; LOCATED IN: membrane; BEST Arabidopsis thaliana protein match is: PHT6; carbohydrate transmembrane transporter/ inorganic phosphate transmembrane transporter/ phosphate transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT5G43340.1); Has 729 Blast hits to 729 proteins in 143 species: Archae - 34; Bacteria - 71; Metazoa - 0; Fungi - 283; Plants - 310; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT4G08895.1p  transcript_id AT4G08895.1  protein_id AT4G08895.1p  transcript_id AT4G08895.1  
At4g08900	chr4:005703499	0.0	W/5703499-5703651,5703730-5703889,5704092-5704225,5704406-5704615,5704690-5704800,5704920-5705180	AT4G08900.1  CDS  function Encodes an arginase, likely to be involved in polyamine biosynthesis in pollen.  go_component chloroplast|GO:0009507|15028209|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_process arginine catabolic process|GO:0006527|7770544|IGI  go_process polyamine metabolic process|GO:0006595||ISS  go_function arginase activity|GO:0004053|18425591|IMP  go_function arginase activity|GO:0004053|7770544|IGI  go_function agmatinase activity|GO:0008783||ISS  product arginase  note arginase; FUNCTIONS IN: arginase activity, agmatinase activity; INVOLVED IN: defense response to bacterium, polyamine metabolic process, arginine catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; CONTAINS InterPro DOMAIN/s: Ureohydrolase (InterPro:IPR006035); BEST Arabidopsis thaliana protein match is: arginase, putative (TAIR:AT4G08870.1); Has 6609 Blast hits to 6605 proteins in 991 species: Archae - 156; Bacteria - 2684; Metazoa - 360; Fungi - 256; Plants - 39; Viruses - 0; Other Eukaryotes - 3114 (source: NCBI BLink).  protein_id AT4G08900.1p  transcript_id AT4G08900.1  protein_id AT4G08900.1p  transcript_id AT4G08900.1  
At4g08910	chr4:005712389	0.0	W/5712389-5712577,5712798-5713247	AT4G08910.1  CDS  gene_syn T3H13.6, T3H13_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78170.1); Has 37 Blast hits to 37 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G08910.1p  transcript_id AT4G08910.1  protein_id AT4G08910.1p  transcript_id AT4G08910.1  
At4g08920	chr4:005724260	0.0	W/5724260-5724593,5724761-5724979,5725063-5726551,5726902-5726905	AT4G08920.1  CDS  gene_syn BLU1, BLUE LIGHT UNINHIBITED 1, CRY1, CRYPTOCHROME 1, CRYPTOCHROME 1 APOPROTEIN (BLUE LIGHT PHOTORECEPTOR, ELONGATED HYPOCOTYL 4, HY4, OOP2, OUT OF PHASE 2, T3H13.14, T3H13_14  gene CRY1  function Encodes CRY1, a flavin-type blue-light photoreceptor with ATP binding and autophosphorylation activity. The photoreceptor may be involved in electron transport. Mutant phenotype displays a blue light-dependent inhibition of hypocotyl elongation. Photoreceptor activity requires light-induced homodimerisation of the N-terminal CNT1 domains of CRY1. Involved in blue-light induced stomatal opening. The C-terminal domain of the protein undergoes a light dependent conformational change. Also involved in response to circadian rhythm. Mutants exhibit long hypocotyl under blue light and are out of phase in their response to circadian rhythm. CRY1 is present in the nucleus and cytoplasm. Different subcellular pools of CRY1 have different functions during photomorphogenesis of Arabidopsis seedlings.  go_component nucleus|GO:0005634|10221900|IDA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|18003924|IDA  go_process circadian rhythm|GO:0007623||NAS  go_process response to water deprivation|GO:0009414|16093319|IGI  go_process response to blue light|GO:0009637||IMP  go_process response to blue light|GO:0009637||NAS  go_process photomorphogenesis|GO:0009640||IMP  go_process blue light signaling pathway|GO:0009785|10364413|TAS  go_process unidimensional cell growth|GO:0009826||IMP  go_process regulation of meristem growth|GO:0010075|18424613|IGI  go_process stomatal movement|GO:0010118|16093319|IGI  go_process singlet oxygen-mediated programmed cell death|GO:0010343|17075038|IMP  go_process circadian regulation of calcium ion oscillation|GO:0010617|17982000|IMP  go_process anthocyanin metabolic process|GO:0046283|17217468|IMP  go_process protein amino acid autophosphorylation|GO:0046777|12846824|IDA  go_process oxidation reduction|GO:0055114|15774475|IMP  go_function protein kinase activity|GO:0004672|12846824|IDA  go_function ATP binding|GO:0005524|12846824|IDA  go_function blue light photoreceptor activity|GO:0009882|8953250|IMP  go_function protein homodimerization activity|GO:0042803|15805487|IPI  product CRY1 (CRYPTOCHROME 1); ATP binding / blue light photoreceptor/ protein homodimerization/ protein kinase  note CRYPTOCHROME 1 (CRY1); FUNCTIONS IN: protein homodimerization activity, protein kinase activity, blue light photoreceptor activity, ATP binding; INVOLVED IN: in 13 processes; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal (InterPro:IPR018394), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), Cryptochrome, plant (InterPro:IPR014134), Cryptochrome/DNA photolyase, class 1 (InterPro:IPR002081); BEST Arabidopsis thaliana protein match is: CRY2 (CRYPTOCHROME 2); blue light photoreceptor/ protein homodimerization (TAIR:AT1G04400.2); Has 8162 Blast hits to 8146 proteins in 888 species: Archae - 51; Bacteria - 1866; Metazoa - 359; Fungi - 97; Plants - 563; Viruses - 0; Other Eukaryotes - 5226 (source: NCBI BLink).  protein_id AT4G08920.1p  transcript_id AT4G08920.1  protein_id AT4G08920.1p  transcript_id AT4G08920.1  
At4g08930	chr4:005729511	0.0	W/5729511-5729675,5729759-5729949,5730042-5730166,5730318-5730724	AT4G08930.1  CDS  gene_syn APR-like 6, ATAPRL6, T3H13.4, T3H13_4  gene ATAPRL6  function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5 -phosphosulfate reductase-like (APRL) group.  go_component endomembrane system|GO:0012505||IEA  go_process cell redox homeostasis|GO:0045454||IEA  product ATAPRL6 (APR-like 6)  note APR-like 6 (ATAPRL6); INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATAPRL4 (APR-like 4) (TAIR:AT1G34780.1); Has 603 Blast hits to 595 proteins in 132 species: Archae - 0; Bacteria - 2; Metazoa - 343; Fungi - 49; Plants - 132; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT4G08930.1p  transcript_id AT4G08930.1  protein_id AT4G08930.1p  transcript_id AT4G08930.1  
At4g08940	chr4:005730986	0.0	C/5730986-5732173	AT4G08940.1  CDS  gene_syn T3H13.12, T3H13_12  go_component intracellular|GO:0005622||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_process response to oxidative stress|GO:0006979|18614705|IMP  product ubiquitin thiolesterase  note ubiquitin thiolesterase; FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: response to oxidative stress; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (InterPro:IPR001578); BEST Arabidopsis thaliana protein match is: ubiquitin thiolesterase (TAIR:AT4G01037.1); Has 214 Blast hits to 214 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 214; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G08940.1p  transcript_id AT4G08940.1  protein_id AT4G08940.1p  transcript_id AT4G08940.1  
At4g08945	chr4:005732668	0.0	W/5732668-5733069	AT4G08945.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 5.2e-16 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element)  
At4g08949	chr4:005739008	0.0	C/5739008-5739151	AT4G08949.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G08949.1p  transcript_id AT4G08949.1  protein_id AT4G08949.1p  transcript_id AT4G08949.1  
At4g08950	chr4:005740378	0.0	W/5740378-5741322	AT4G08950.1  CDS  gene_syn EXO, EXORDIUM, T3H13.3, T3H13_3  gene EXO  go_component cell wall|GO:0005618|14595688|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_component plant-type cell wall|GO:0009505|19216774|IDA  go_process response to brassinosteroid stimulus|GO:0009741|19216774|IMP  go_function molecular_function|GO:0003674||ND  product EXO (EXORDIUM)  note EXORDIUM (EXO); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to brassinosteroid stimulus; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphate-induced protein 1 conserved region (InterPro:IPR006766); BEST Arabidopsis thaliana protein match is: PHI-1 (PHOSPHATE-INDUCED 1) (TAIR:AT1G35140.1); Has 234 Blast hits to 233 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 232; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G08950.1p  transcript_id AT4G08950.1  protein_id AT4G08950.1p  transcript_id AT4G08950.1  
At4g08953	chr4:005742884	0.0	C/5742884-5743345	AT4G08953.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.4e-22 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea)  
At4g08956	chr4:005743907	0.0	C/5743907-5744566	AT4G08956.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At4g08960	chr4:005746326	0.0	W/5746326-5747494,5747985-5747994	AT4G08960.1  CDS  gene_syn T3H13.2, T3H13_2  go_function phosphatase activator activity|GO:0019211||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function phosphatase activator activity|GO:0019211||ISS  product phosphotyrosyl phosphatase activator (PTPA) family protein  note phosphotyrosyl phosphatase activator (PTPA) family protein; FUNCTIONS IN: phosphatase activator activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphotyrosyl phosphatase activator, PTPA (InterPro:IPR004327); Has 593 Blast hits to 585 proteins in 175 species: Archae - 0; Bacteria - 4; Metazoa - 247; Fungi - 211; Plants - 54; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT4G08960.1p  transcript_id AT4G08960.1  protein_id AT4G08960.1p  transcript_id AT4G08960.1  
At4g08967	chr4:005752018	0.0	C/5752018-5752128	AT4G08967.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G08967.1p  transcript_id AT4G08967.1  protein_id AT4G08967.1p  transcript_id AT4G08967.1  
At4g08970	chr4:005753161	0.0	C/5753161-5755360	AT4G08970.1  mRNA_TE_gene  pseudo  gene_syn T3H13.13, T3H13_13  note Transposable element gene, Mutator-like transposase family, has a 8.1e-28 P-value blast match to Q9SL18 /349-510 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g08980	chr4:005758993	0.0	W/5758993-5759303,5759466-5760108	AT4G08980.1  CDS  gene_syn T3H13.1, T3H13_1  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product F-box family protein (FBW2)  note F-box family protein (FBW2); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (FBL20) (TAIR:AT4G05460.1); Has 817 Blast hits to 732 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 475; Fungi - 12; Plants - 305; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT4G08980.1p  transcript_id AT4G08980.1  protein_id AT4G08980.1p  transcript_id AT4G08980.1  
At4g08980	chr4:005758993	0.0	W/5758993-5759303,5759466-5760108	AT4G08980.2  CDS  gene_syn T3H13.1, T3H13_1  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product F-box family protein (FBW2)  note F-box family protein (FBW2); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (FBL20) (TAIR:AT4G05460.1); Has 817 Blast hits to 732 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 475; Fungi - 12; Plants - 305; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT4G08980.2p  transcript_id AT4G08980.2  protein_id AT4G08980.2p  transcript_id AT4G08980.2  
At4g08980	chr4:005758993	0.0	W/5758993-5759303,5759466-5760108	AT4G08980.3  CDS  gene_syn T3H13.1, T3H13_1  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product F-box family protein (FBW2)  note F-box family protein (FBW2); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (FBL20) (TAIR:AT4G05460.1); Has 817 Blast hits to 732 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 475; Fungi - 12; Plants - 305; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT4G08980.3p  transcript_id AT4G08980.3  protein_id AT4G08980.3p  transcript_id AT4G08980.3  
At4g08980	chr4:005758993	0.0	W/5758993-5759303,5759466-5760108	AT4G08980.4  CDS  gene_syn T3H13.1, T3H13_1  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product F-box family protein (FBW2)  note F-box family protein (FBW2); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (FBL20) (TAIR:AT4G05460.1); Has 817 Blast hits to 732 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 475; Fungi - 12; Plants - 305; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT4G08980.4p  transcript_id AT4G08980.4  protein_id AT4G08980.4p  transcript_id AT4G08980.4  
At4g08980	chr4:005758993	0.0	W/5758993-5759303,5759466-5760108	AT4G08980.5  CDS  gene_syn T3H13.1, T3H13_1  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product F-box family protein (FBW2)  note F-box family protein (FBW2); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (FBL20) (TAIR:AT4G05460.1).  protein_id AT4G08980.5p  transcript_id AT4G08980.5  protein_id AT4G08980.5p  transcript_id AT4G08980.5  
At4g08990	chr4:005764781	0.0	W/5764781-5766174,5766457-5767969,5768070-5768234,5768338-5768536,5768612-5768723,5768813-5768960,5769037-5769234,5769344-5769622,5769720-5769881,5769978-5770196,5770347-5770496	AT4G08990.1  CDS  gene_syn F23J3.20, F23J3_20  go_component nucleus|GO:0005634||IEA  go_process DNA methylation|GO:0006306||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA (cytosine-5-)-methyltransferase activity|GO:0003886||IEA  go_function protein binding|GO:0005515||IEA  go_process DNA methylation|GO:0006306||ISS  go_function DNA (cytosine-5-)-methyltransferase activity|GO:0003886||ISS  product DNA (cytosine-5-)-methyltransferase, putative  note DNA (cytosine-5-)-methyltransferase, putative; FUNCTIONS IN: protein binding, DNA binding, DNA (cytosine-5-)-methyltransferase activity; INVOLVED IN: DNA methylation; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA (cytosine-5)-methyltransferase 1 (InterPro:IPR017198), C-5 cytosine-specific DNA methylase (InterPro:IPR001525), Bromo adjacent region (InterPro:IPR001025), C-5 cytosine-specific DNA methylase, active site (InterPro:IPR018117); BEST Arabidopsis thaliana protein match is: DMT2 (DNA METHYLTRANSFERASE 2); DNA (cytosine-5-)-methyltransferase/ DNA binding / protein binding (TAIR:AT4G14140.1); Has 4879 Blast hits to 4147 proteins in 838 species: Archae - 142; Bacteria - 2281; Metazoa - 618; Fungi - 179; Plants - 221; Viruses - 94; Other Eukaryotes - 1344 (source: NCBI BLink).  protein_id AT4G08990.1p  transcript_id AT4G08990.1  protein_id AT4G08990.1p  transcript_id AT4G08990.1  
At4g08991	chr4:005770770	0.0	C/5770770-5771335	AT4G08991.1  pseudogenic_transcript  pseudo  function Pseudogene of AT4G14145  
At4g08995	chr4:005772062	0.0	C/5772062-5772949	AT4G08995.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to putative reverse transcriptase., similar to putative reverse transcriptase; blastp match of 24% identity and 4.4e-09 P-value to GP|21450442|gb|AAM54146.1|AC104616_5|AC104616 putative reverse transcriptase. {Oryza sativa (japonica cultivar-group)}  
At4g09000	chr4:005775387	0.0	W/5775387-5775878,5775956-5776078,5776170-5776286,5776372-5776438,5777000-5777157	AT4G09000.2  CDS  gene_syn GENERAL REGULATORY FACTOR 1, GENERAL REGULATORY FACTOR1-G-BOX FACTOR 14-3-3 HOMOLOG ISOFORM CHI, GF14 CHI, GRF1  gene GRF1  function Encodes a 14-3-3 gene, designated GRF1 chi (for general regulatory factor1-G-box factor 14-3-3 homolog isoform chi). The major native forms of 14-3-3s are homo- and hetero-dimers, the biological functions of which are to interact physically with specific client proteins and thereby effect a change in the client. As a result, 14-3-3s are involved in a vast array of processes such as the response to stress, cell-cycle control, and apoptosis, serving as adapters, activators, and repressors. There are currently 133 full-length sequences available.  go_component nucleus|GO:0005634||IDA  go_component cytosol|GO:0005829|18433157|IDA  go_function protein binding|GO:0005515||NAS  go_function protein phosphorylated amino acid binding|GO:0045309|10631267|TAS  product 14-3-3-like protein GF14 chi /  general regulatory factor 1 (GRF1)  note GENERAL REGULATORY FACTOR 1 (GRF1); FUNCTIONS IN: protein phosphorylated amino acid binding, protein binding; LOCATED IN: cytosol, nucleus; EXPRESSED IN: male gametophyte, guard cell, epidermis, papillae, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: GF14 PHI (GF14 PROTEIN PHI CHAIN); protein binding / protein phosphorylated amino acid binding (TAIR:AT1G35160.1).  protein_id AT4G09000.2p  transcript_id AT4G09000.2  protein_id AT4G09000.2p  transcript_id AT4G09000.2  
At4g09000	chr4:005775387	0.0	W/5775387-5775878,5775956-5776078,5776170-5776286,5777086-5777157	AT4G09000.1  CDS  gene_syn GENERAL REGULATORY FACTOR 1, GENERAL REGULATORY FACTOR1-G-BOX FACTOR 14-3-3 HOMOLOG ISOFORM CHI, GF14 CHI, GRF1  gene GRF1  function Encodes a 14-3-3 gene, designated GRF1 chi (for general regulatory factor1-G-box factor 14-3-3 homolog isoform chi). The major native forms of 14-3-3s are homo- and hetero-dimers, the biological functions of which are to interact physically with specific client proteins and thereby effect a change in the client. As a result, 14-3-3s are involved in a vast array of processes such as the response to stress, cell-cycle control, and apoptosis, serving as adapters, activators, and repressors. There are currently 133 full-length sequences available.  go_component nucleus|GO:0005634|14617066|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component nucleus|GO:0005634||IDA  go_component cytosol|GO:0005829|18433157|IDA  go_function protein binding|GO:0005515||NAS  go_function protein phosphorylated amino acid binding|GO:0045309|10631267|TAS  product 14-3-3-like protein GF14 chi /  general regulatory factor 1 (GRF1)  note GENERAL REGULATORY FACTOR 1 (GRF1); FUNCTIONS IN: protein phosphorylated amino acid binding, protein binding; INVOLVED IN: response to cadmium ion; LOCATED IN: in 7 components; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: GF14 PHI (GF14 PROTEIN PHI CHAIN); protein binding / protein phosphorylated amino acid binding (TAIR:AT1G35160.1); Has 2095 Blast hits to 2087 proteins in 295 species: Archae - 0; Bacteria - 2; Metazoa - 1026; Fungi - 218; Plants - 542; Viruses - 0; Other Eukaryotes - 307 (source: NCBI BLink).  protein_id AT4G09000.1p  transcript_id AT4G09000.1  protein_id AT4G09000.1p  transcript_id AT4G09000.1  
At4g09010	chr4:005779243	0.0	C/5779243-5779338,5779062-5779163,5778825-5778912,5778643-5778743,5778533-5778573,5778327-5778457,5778127-5778233,5777911-5778048,5777698-5777832,5777502-5777612	AT4G09010.1  CDS  gene_syn APX4, ASCORBATE PEROXIDASE 4, F23J3.40, F23J3_40  gene APX4  function Encodes a microsomal ascorbate peroxidase APX4. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function heme binding|GO:0020037||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  go_function peroxidase activity|GO:0004601||ISS  product APX4 (ASCORBATE PEROXIDASE 4); heme binding / peroxidase  note ASCORBATE PEROXIDASE 4 (APX4); FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: in 7 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: APX5 (ASCORBATE PEROXIDASE 5); L-ascorbate peroxidase/ heme binding / peroxidase (TAIR:AT4G35970.1); Has 830 Blast hits to 830 proteins in 198 species: Archae - 16; Bacteria - 99; Metazoa - 0; Fungi - 259; Plants - 400; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT4G09010.1p  transcript_id AT4G09010.1  protein_id AT4G09010.1p  transcript_id AT4G09010.1  
At4g09012	chr4:005782042	0.0	C/5782042-5782186,5781045-5781106,5780470-5780541	AT4G09012.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: 60S ribosomal protein-related (TAIR:AT5G40080.1); Has 124 Blast hits to 124 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 65; Fungi - 23; Plants - 25; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT4G09012.1p  transcript_id AT4G09012.1  protein_id AT4G09012.1p  transcript_id AT4G09012.1  
At4g09020	chr4:005784099	0.0	W/5784099-5784202,5784274-5784322,5784418-5784477,5784558-5784712,5784799-5784892,5784979-5785215,5785352-5785456,5785662-5785766,5785932-5786066,5786183-5786269,5786353-5786404,5786525-5786588,5786775-5786874,5786967-5787067,5787203-5787254,5787339-5787401,5787520-5787609,5787686-5787758,5787862-5787941,5788024-5788128,5788214-5788312,5788389-5788450,5788546-5788657,5788729-5788839	AT4G09020.1  CDS  gene_syn ATISA3, F23J3.50, F23J3_50, ISA3, ISOAMYLASE 3  gene ISA3  function Encodes an isoamylase-like protein. Mutant studies show that the gene is strongly involved in starch breakdown. A GUS-protein fusion product was shown to localize to the surface of chloroplastic structures reminiscent of starch granules. In the mutants, the chloroplastic & 945;-amylase AMY3 is upregulated.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast starch grain|GO:0009569|16495218|IDA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_process starch catabolic process|GO:0005983|18815382|IMP  go_function alpha-amylase activity|GO:0004556||ISS  go_function isoamylase activity|GO:0019156|18815382|IDA  product ISA3 (ISOAMYLASE 3); alpha-amylase/ isoamylase  note ISOAMYLASE 3 (ISA3); FUNCTIONS IN: isoamylase activity, alpha-amylase activity; INVOLVED IN: carbohydrate metabolic process, starch catabolic process; LOCATED IN: chloroplast, chloroplast stroma, chloroplast starch grain; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 13, N-terminal (InterPro:IPR004193), Immunoglobulin E-set (InterPro:IPR014756), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Alpha-amylase, C-terminal all beta (InterPro:IPR006048), Immunoglobulin-like fold (InterPro:IPR013783), Glycosyl hydrolase, family 13, all-beta (InterPro:IPR013780), Glycosyl hydrolase, family 13, catalytic region (InterPro:IPR006047), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: ISA1 (ISOAMYLASE 1); alpha-amylase/ isoamylase (TAIR:AT2G39930.1); Has 10917 Blast hits to 10893 proteins in 1382 species: Archae - 95; Bacteria - 8394; Metazoa - 367; Fungi - 298; Plants - 468; Viruses - 0; Other Eukaryotes - 1295 (source: NCBI BLink).  protein_id AT4G09020.1p  transcript_id AT4G09020.1  protein_id AT4G09020.1p  transcript_id AT4G09020.1  
At4g09030	chr4:005792249	0.0	W/5792249-5792632	AT4G09030.1  CDS  gene_syn AGP10, ARABINOGALACTAN PROTEIN 10, ATAGP10, F23J3.60, F23J3_60  gene AGP10  function Encodes arabinogalactan protein (AGP10).  go_component anchored to membrane|GO:0031225|11006345|TAS  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  product AGP10 (ARABINOGALACTAN PROTEIN 10)  note ARABINOGALACTAN PROTEIN 10 (AGP10); LOCATED IN: anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 45228 Blast hits to 19222 proteins in 1067 species: Archae - 340; Bacteria - 11461; Metazoa - 9826; Fungi - 3612; Plants - 6572; Viruses - 1797; Other Eukaryotes - 11620 (source: NCBI BLink).  protein_id AT4G09030.1p  transcript_id AT4G09030.1  protein_id AT4G09030.1p  transcript_id AT4G09030.1  
At4g09040	chr4:005796944	0.0	C/5796944-5797315,5796751-5796849,5795668-5795958,5795075-5795227	AT4G09040.1  CDS  gene_syn F23J3.70, F23J3_70  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative (TAIR:AT2G35410.1); Has 13296 Blast hits to 10466 proteins in 519 species: Archae - 12; Bacteria - 987; Metazoa - 6994; Fungi - 1866; Plants - 1955; Viruses - 0; Other Eukaryotes - 1482 (source: NCBI BLink).  protein_id AT4G09040.1p  transcript_id AT4G09040.1  protein_id AT4G09040.1p  transcript_id AT4G09040.1  
At4g09040	chr4:005797104	0.0	C/5797104-5797193,5796944-5797045,5796751-5796849,5795668-5795958,5795075-5795227	AT4G09040.2  CDS  gene_syn F23J3.70, F23J3_70  go_component chloroplast|GO:0009507|18431481|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative (TAIR:AT2G35410.1); Has 13056 Blast hits to 10174 proteins in 504 species: Archae - 12; Bacteria - 945; Metazoa - 6939; Fungi - 1799; Plants - 1940; Viruses - 0; Other Eukaryotes - 1421 (source: NCBI BLink).  protein_id AT4G09040.2p  transcript_id AT4G09040.2  protein_id AT4G09040.2p  transcript_id AT4G09040.2  
At4g09060	chr4:005800014	0.0	C/5800014-5800253,5799653-5799925,5798207-5798464,5798021-5798137,5797781-5797918	AT4G09060.1  CDS  gene_syn F23J3.90, F23J3_90  go_component membrane|GO:0016020|17432890|IDA  product unknown protein  note unknown protein; LOCATED IN: membrane; EXPRESSED IN: leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14680.1); Has 6901 Blast hits to 4989 proteins in 427 species: Archae - 99; Bacteria - 375; Metazoa - 4117; Fungi - 391; Plants - 196; Viruses - 91; Other Eukaryotes - 1632 (source: NCBI BLink).  protein_id AT4G09060.1p  transcript_id AT4G09060.1  protein_id AT4G09060.1p  transcript_id AT4G09060.1  
At4g09070	chr4:005802308	0.0	W/5802308-5802321,5802421-5802832,5803159-5803392	AT4G09070.1  CDS  gene_syn F23J3.100, F23J3_100  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TATA-binding related factor (InterPro:IPR013921); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28230.1); Has 41 Blast hits to 41 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G09070.1p  transcript_id AT4G09070.1  protein_id AT4G09070.1p  transcript_id AT4G09070.1  
At4g09080	chr4:005804451	0.0	W/5804451-5804594,5804694-5804804,5804897-5805088,5805164-5805412,5805489-5805743,5805854-5806093	AT4G09080.1  CDS  gene_syn ATTOC75-IV, F23J3.110, F23J3_110, TOC75-IV, TRANSLOCON OUTER MEMBRANE COMPLEX 75-IV  gene TOC75-IV  function Component of the translocon outer membrane (TOC) complex. Forms the outer envelope translocation channel (beta-barrel). Plays a role in preprotein conductance. Imported into chloroplast. Knockout mutants have abnormal etioplasts.  go_component chloroplast outer membrane|GO:0009707||ISS  go_component integral to chloroplast outer membrane|GO:0031359|15908591|IDA  go_process etioplast organization|GO:0009662|15908591|IMP  go_process protein targeting to chloroplast|GO:0045036|12951325|IDA  product TOC75-IV  note TOC75-IV; INVOLVED IN: protein targeting to chloroplast, etioplast organization; LOCATED IN: chloroplast outer membrane, integral to chloroplast outer membrane; EXPRESSED IN: rosette leaf, flower, root; EXPRESSED DURING: seedling growth, petal differentiation and expansion stage, IL.00 inflorescence just visible; CONTAINS InterPro DOMAIN/s: Bacterial surface antigen (D15) (InterPro:IPR000184); BEST Arabidopsis thaliana protein match is: TOC75-III (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 75-III); P-P-bond-hydrolysis-driven protein transmembrane transporter (TAIR:AT3G46740.1); Has 325 Blast hits to 325 proteins in 66 species: Archae - 0; Bacteria - 119; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).  protein_id AT4G09080.1p  transcript_id AT4G09080.1  protein_id AT4G09080.1p  transcript_id AT4G09080.1  
At4g09090	chr4:005807320	0.0	C/5807320-5807670	AT4G09090.1  CDS  gene_syn T8A17.3  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycosyl hydrolase family protein 17  note glycosyl hydrolase family protein 17; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: embryo; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09465.1); Has 736 Blast hits to 700 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 736; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G09090.1p  transcript_id AT4G09090.1  protein_id AT4G09090.1p  transcript_id AT4G09090.1  
At4g09100	chr4:005811256	0.0	W/5811256-5811654	AT4G09100.1  CDS  gene_syn T8A17.4  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G35000.1); Has 6193 Blast hits to 6173 proteins in 214 species: Archae - 0; Bacteria - 2; Metazoa - 2030; Fungi - 507; Plants - 2634; Viruses - 27; Other Eukaryotes - 993 (source: NCBI BLink).  protein_id AT4G09100.1p  transcript_id AT4G09100.1  protein_id AT4G09100.1p  transcript_id AT4G09100.1  
At4g09110	chr4:005812488	0.0	W/5812488-5813396	AT4G09110.1  CDS  gene_syn T8A17.5  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G09120.1); Has 6295 Blast hits to 6271 proteins in 219 species: Archae - 0; Bacteria - 2; Metazoa - 2150; Fungi - 448; Plants - 2662; Viruses - 42; Other Eukaryotes - 991 (source: NCBI BLink).  protein_id AT4G09110.1p  transcript_id AT4G09110.1  protein_id AT4G09110.1p  transcript_id AT4G09110.1  
At4g09120	chr4:005813998	0.0	W/5813998-5815035	AT4G09120.1  CDS  gene_syn T8A17.6  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G09130.1); Has 6118 Blast hits to 6099 proteins in 215 species: Archae - 0; Bacteria - 2; Metazoa - 2005; Fungi - 462; Plants - 2674; Viruses - 29; Other Eukaryotes - 946 (source: NCBI BLink).  protein_id AT4G09120.1p  transcript_id AT4G09120.1  protein_id AT4G09120.1p  transcript_id AT4G09120.1  
At4g09130	chr4:005815849	0.0	W/5815849-5816922	AT4G09130.1  CDS  gene_syn T8A17.9  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G09120.1); Has 6641 Blast hits to 6622 proteins in 225 species: Archae - 0; Bacteria - 6; Metazoa - 2164; Fungi - 540; Plants - 2798; Viruses - 52; Other Eukaryotes - 1081 (source: NCBI BLink).  protein_id AT4G09130.1p  transcript_id AT4G09130.1  protein_id AT4G09130.1p  transcript_id AT4G09130.1  
At4g09140	chr4:005820766	0.0	C/5820766-5821035,5820495-5820667,5820326-5820398,5820111-5820245,5819808-5820018,5819563-5819711,5819284-5819382,5819118-5819187,5818868-5819003,5818551-5818645,5818357-5818465,5818102-5818267,5817795-5817956,5817528-5817684,5817270-5817433,5817107-5817151	AT4G09140.1  CDS  gene_syn ARABIDOPSIS THALIANA MUTL-HOMOLOGUE 1, ATMLH1, F23J3.170, F23J3_170, MLH1, MUTL-HOMOLOGUE 1  gene MLH1  function Encodes a protein with similarity to Mut1 DNA mismatch repair protein, from E.coli. The protein is expressed during prophase I of meiosis, colocalizes with MLH3 throughout pachytene and is dependent on MLH3 for proper localization.  go_component nuclear chromatin|GO:0000790|19153602|IDA  go_process mismatch repair|GO:0006298|10628846|ISS  go_process mitotic recombination|GO:0006312|17559505|IMP  go_process pollen development|GO:0009555|17559505|IMP  go_process seed germination|GO:0009845|17559505|IMP  go_process fruit development|GO:0010154|17559505|IMP  go_process seed development|GO:0048316|17559505|IMP  go_function protein binding, bridging|GO:0030674|10628846|ISS  product MLH1 (MUTL-HOMOLOGUE 1); protein binding, bridging  note MUTL-HOMOLOGUE 1 (MLH1); FUNCTIONS IN: protein binding, bridging; INVOLVED IN: in 6 processes; LOCATED IN: nuclear chromatin; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein Mlh1 (InterPro:IPR011186), DNA mismatch repair, conserved site (InterPro:IPR014762), ATP-binding region, ATPase-like (InterPro:IPR003594), DNA mismatch repair protein, C-terminal (InterPro:IPR013507), DNA mismatch repair protein, N-terminal (InterPro:IPR014763), DNA mismatch repair protein (InterPro:IPR002099), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721); BEST Arabidopsis thaliana protein match is: PMS1 (POSTMEIOTIC SEGREGATION 1); ATP binding / mismatched DNA binding (TAIR:AT4G02460.1); Has 4413 Blast hits to 4356 proteins in 1310 species: Archae - 40; Bacteria - 2457; Metazoa - 415; Fungi - 323; Plants - 54; Viruses - 0; Other Eukaryotes - 1124 (source: NCBI BLink).  protein_id AT4G09140.1p  transcript_id AT4G09140.1  protein_id AT4G09140.1p  transcript_id AT4G09140.1  
At4g09143	chr4:005821214	0.0	W/5821214-5822443	AT4G09143.1  pseudogenic_transcript  pseudo  note pseudogene, type 2 peroxiredoxin -related, similar to type 2 peroxiredoxin, putative  
At4g09146	chr4:005822698	0.0	W/5822698-5827158	AT4G09146.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.7e-196 P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At4g09150	chr4:005828753	0.0	W/5828753-5828938,5829009-5829127,5829206-5829650,5829737-5829852,5829933-5830671,5830822-5830966,5831047-5831204,5831329-5831517,5831607-5831834,5832183-5832507,5832735-5832918,5833016-5833475	AT4G09150.1  CDS  gene_syn F23J3.180, F23J3_180  go_function phosphopantetheine binding|GO:0031177||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product T-complex protein 11  note T-complex protein 11; FUNCTIONS IN: phosphopantetheine binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: T-complex 11 (InterPro:IPR008862), Phosphopantetheine attachment site (InterPro:IPR006162); BEST Arabidopsis thaliana protein match is: T-complex protein 11 (TAIR:AT1G22930.1); Has 12960 Blast hits to 8305 proteins in 753 species: Archae - 49; Bacteria - 1704; Metazoa - 5727; Fungi - 995; Plants - 381; Viruses - 20; Other Eukaryotes - 4084 (source: NCBI BLink).  protein_id AT4G09150.1p  transcript_id AT4G09150.1  protein_id AT4G09150.1p  transcript_id AT4G09150.1  
At4g09153	chr4:005835095	0.0	W/5835095-5835146,5835234-5835412	AT4G09153.1  CDS  gene_syn LCR36, Low-molecular-weight cysteine-rich 36  gene LCR36  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR36 (Low-molecular-weight cysteine-rich 36)  note Low-molecular-weight cysteine-rich 36 (LCR36); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); BEST Arabidopsis thaliana protein match is: LCR35 (Low-molecular-weight cysteine-rich 35) (TAIR:AT2G22121.1); Has 29 Blast hits to 29 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G09153.1p  transcript_id AT4G09153.1  protein_id AT4G09153.1p  transcript_id AT4G09153.1  
At4g09160	chr4:005839761	0.0	W/5839761-5841233,5841313-5841437,5841521-5841671,5841901-5842158	AT4G09160.1  CDS  gene_syn T8A17.90, T8A17_90  go_component chloroplast|GO:0009507|15028209|IDA  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  note SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), GOLD (InterPro:IPR009038), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT1G72160.1); Has 10250 Blast hits to 6831 proteins in 530 species: Archae - 51; Bacteria - 1021; Metazoa - 4595; Fungi - 1780; Plants - 552; Viruses - 126; Other Eukaryotes - 2125 (source: NCBI BLink).  protein_id AT4G09160.1p  transcript_id AT4G09160.1  protein_id AT4G09160.1p  transcript_id AT4G09160.1  
At4g09170	chr4:005843007	0.0	C/5843007-5843408	AT4G09170.1  CDS  gene_syn T8A17.80, T8A17_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G35430.1); Has 10 Blast hits to 10 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G09170.1p  transcript_id AT4G09170.1  protein_id AT4G09170.1p  transcript_id AT4G09170.1  
At4g09180	chr4:005847513	0.0	W/5847513-5847965,5848458-5848604,5848809-5848874,5849245-5849313,5849447-5849500	AT4G09180.1  CDS  gene_syn T8A17.70, T8A17_70  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT1G35460.1); Has 1277 Blast hits to 1277 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 0; Plants - 1154; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G09180.1p  transcript_id AT4G09180.1  protein_id AT4G09180.1p  transcript_id AT4G09180.1  
At4g09190	chr4:005855176	0.0	W/5855176-5856327	AT4G09190.1  CDS  gene_syn T30A10.1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G18160.1); Has 883 Blast hits to 875 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 883; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G09190.1p  transcript_id AT4G09190.1  protein_id AT4G09190.1p  transcript_id AT4G09190.1  
At4g09200	chr4:005859380	0.0	W/5859380-5859639,5859978-5860136,5860293-5860428,5860579-5860655,5860729-5860870,5861014-5861082,5861172-5861228,5861300-5861386,5861465-5861671	AT4G09200.1  CDS  gene_syn T30A10.2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SPla/RYanodine receptor (SPRY) domain-containing protein  note SPla/RYanodine receptor (SPRY) domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: B302 (SPRY)-like (InterPro:IPR001870), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), CT11-RanBPM (InterPro:IPR013144), SPla/RYanodine receptor SPRY (InterPro:IPR003877); BEST Arabidopsis thaliana protein match is: SPla/RYanodine receptor (SPRY) domain-containing protein (TAIR:AT4G09310.1); Has 620 Blast hits to 608 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 295; Fungi - 119; Plants - 93; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).  protein_id AT4G09200.1p  transcript_id AT4G09200.1  protein_id AT4G09200.1p  transcript_id AT4G09200.1  
At4g09205	chr4:005862109	0.0	C/5862109-5864769	AT4G09205.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.6e-146 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)  
At4g09210	chr4:005870289	0.0	W/5870289-5870478,5870699-5870724,5870813-5870937,5871037-5871160	AT4G09210.1  CDS  gene_syn T30A10.3  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09260.1); Has 9 Blast hits to 9 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G09210.1p  transcript_id AT4G09210.1  protein_id AT4G09210.1p  transcript_id AT4G09210.1  
At4g09220	chr4:005872401	0.0	W/5872401-5872490,5872548-5872760	AT4G09220.1  CDS  gene_syn T30A10.4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09270.1); Has 82 Blast hits to 82 proteins in 19 species: Archae - 0; Bacteria - 3; Metazoa - 55; Fungi - 5; Plants - 14; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G09220.1p  transcript_id AT4G09220.1  protein_id AT4G09220.1p  transcript_id AT4G09220.1  
At4g09230	chr4:005873202	0.0	C/5873202-5874506	AT4G09230.1  mRNA_TE_gene  pseudo  gene_syn T30A10.5  note Transposable element gene, pseudogene, hypothetical protein  
At4g09250	chr4:005876687	0.0	W/5876687-5876946,5877285-5877443,5877600-5877735,5877886-5877962,5878036-5878177,5878321-5878389,5878772-5878978	AT4G09250.1  CDS  gene_syn T30A10.10, T30A10_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: B302 (SPRY)-like (InterPro:IPR001870), LisH dimerisation motif (InterPro:IPR006594), SPla/RYanodine receptor SPRY (InterPro:IPR003877); BEST Arabidopsis thaliana protein match is: SPla/RYanodine receptor (SPRY) domain-containing protein (TAIR:AT4G09310.1); Has 419 Blast hits to 407 proteins in 134 species: Archae - 0; Bacteria - 0; Metazoa - 190; Fungi - 78; Plants - 48; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).  protein_id AT4G09250.1p  transcript_id AT4G09250.1  protein_id AT4G09250.1p  transcript_id AT4G09250.1  
At4g09255	chr4:005879363	0.0	C/5879363-5882074	AT4G09255.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 5.9e-147 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)  
At4g09260	chr4:005887592	0.0	W/5887592-5887781,5888002-5888027,5888116-5888240,5888340-5888463	AT4G09260.1  CDS  gene_syn T30A10.20, T30A10_20  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09210.1); Has 9 Blast hits to 9 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G09260.1p  transcript_id AT4G09260.1  protein_id AT4G09260.1p  transcript_id AT4G09260.1  
At4g09270	chr4:005889703	0.0	W/5889703-5889792,5889850-5890062	AT4G09270.1  CDS  gene_syn T30A10.30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09220.1); Has 82 Blast hits to 82 proteins in 19 species: Archae - 0; Bacteria - 3; Metazoa - 55; Fungi - 5; Plants - 14; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G09270.1p  transcript_id AT4G09270.1  protein_id AT4G09270.1p  transcript_id AT4G09270.1  
At4g09280	chr4:005890496	0.0	C/5890496-5891808	AT4G09280.1  mRNA_TE_gene  pseudo  gene_syn T30A10.40, T30A10_40  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G24930.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD65034.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At4g09290	chr4:005893344	0.0	C/5893344-5894969	AT4G09290.1  mRNA_TE_gene  pseudo  gene_syn T30A10.50, T30A10_50  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G30640.1); similar to Y55B1BR.3 [Caenorhabditis elegans] (GB:NP_497198.1)  
At4g09300	chr4:005899008	0.0	W/5899008-5899010,5899079-5899238,5899814-5899920,5900002-5900121,5900196-5900352,5900562-5900689	AT4G09300.1  CDS  gene_syn T30A10.60, T30A10_60  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif, subgroup (InterPro:IPR013720), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), CT11-RanBPM (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61150.6); Has 369 Blast hits to 369 proteins in 108 species: Archae - 0; Bacteria - 2; Metazoa - 175; Fungi - 55; Plants - 90; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT4G09300.1p  transcript_id AT4G09300.1  protein_id AT4G09300.1p  transcript_id AT4G09300.1  
At4g09310	chr4:005902949	0.0	W/5902949-5903208,5903547-5903705,5903862-5903997,5904148-5904224,5904298-5904439,5904583-5904651,5904741-5904797,5904869-5904955,5905034-5905240	AT4G09310.1  CDS  gene_syn T30A10.70, T30A10_70  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SPla/RYanodine receptor (SPRY) domain-containing protein  note SPla/RYanodine receptor (SPRY) domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: B302 (SPRY)-like (InterPro:IPR001870), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), CT11-RanBPM (InterPro:IPR013144), SPla/RYanodine receptor SPRY (InterPro:IPR003877); BEST Arabidopsis thaliana protein match is: SPla/RYanodine receptor (SPRY) domain-containing protein (TAIR:AT4G09200.1); Has 620 Blast hits to 608 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 295; Fungi - 119; Plants - 93; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).  protein_id AT4G09310.1p  transcript_id AT4G09310.1  protein_id AT4G09310.1p  transcript_id AT4G09310.1  
At4g09313	chr4:005905647	0.0	C/5905647-5908853	AT4G09313.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.9e-148 P-value blast match to GB:AAB82754 retrofit (TY1_Copia-element) (Oryza longistaminata)  
At4g09316	chr4:005914032	0.0	C/5914032-5916593	AT4G09316.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 6.3e-116 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element)  
At4g09320	chr4:005923424	0.0	W/5923424-5923534,5923655-5923703,5924017-5924366	AT4G09320.1  CDS  gene_syn NDPK1, T30A10.80, T30A10_80  gene NDPK1  function nucleoside diphosphate kinase type 1 (NDPK1) gene, complete  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function nucleoside diphosphate kinase activity|GO:0004550||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside diphosphate kinase activity|GO:0004550||ISS  go_function ATP binding|GO:0005524||ISS  product NDPK1; ATP binding / nucleoside diphosphate kinase  note NDPK1; FUNCTIONS IN: nucleoside diphosphate kinase activity, ATP binding; INVOLVED IN: response to cadmium ion, response to salt stress; LOCATED IN: apoplast, chloroplast, plasma membrane, vacuole; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside diphosphate kinase, core (InterPro:IPR001564); BEST Arabidopsis thaliana protein match is: NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2); ATP binding / nucleoside diphosphate kinase/ protein binding (TAIR:AT5G63310.1); Has 6456 Blast hits to 6311 proteins in 1552 species: Archae - 205; Bacteria - 2604; Metazoa - 915; Fungi - 118; Plants - 275; Viruses - 17; Other Eukaryotes - 2322 (source: NCBI BLink).  protein_id AT4G09320.1p  transcript_id AT4G09320.1  protein_id AT4G09320.1p  transcript_id AT4G09320.1  
At4g09340	chr4:005927269	0.0	C/5927269-5927597,5926898-5927044,5926736-5926822,5926597-5926642,5926162-5926238,5925888-5926044,5925731-5925799,5925587-5925646,5925407-5925493,5925015-5925299	AT4G09340.1  CDS  gene_syn AT4G09330, T30A10.100, T30A10_100  go_component cellular_component|GO:0005575||ND  product SPla/RYanodine receptor (SPRY) domain-containing protein  note SPla/RYanodine receptor (SPRY) domain-containing protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: B302 (SPRY)-like (InterPro:IPR001870), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), CT11-RanBPM (InterPro:IPR013144), SPla/RYanodine receptor SPRY (InterPro:IPR003877); BEST Arabidopsis thaliana protein match is: SPla/RYanodine receptor (SPRY) domain-containing protein (TAIR:AT1G35470.2); Has 922 Blast hits to 864 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 443; Fungi - 205; Plants - 109; Viruses - 0; Other Eukaryotes - 165 (source: NCBI BLink).  protein_id AT4G09340.1p  transcript_id AT4G09340.1  protein_id AT4G09340.1p  transcript_id AT4G09340.1  
At4g09350	chr4:005931827	0.0	C/5931827-5932152,5931317-5931740	AT4G09350.1  CDS  gene_syn T30A10.110, T30A10_110  go_component chloroplast|GO:0009507|18431481|IDA  go_function heat shock protein binding|GO:0031072||IEA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock protein, putative (TAIR:AT1G80030.3); Has 15339 Blast hits to 15338 proteins in 1885 species: Archae - 109; Bacteria - 5283; Metazoa - 3148; Fungi - 1276; Plants - 1044; Viruses - 8; Other Eukaryotes - 4471 (source: NCBI BLink).  protein_id AT4G09350.1p  transcript_id AT4G09350.1  protein_id AT4G09350.1p  transcript_id AT4G09350.1  
At4g09360	chr4:005940186	0.0	W/5940186-5940788,5940832-5941095,5941294-5941470,5941536-5941666,5941749-5942472,5942529-5942717,5942807-5943280	AT4G09360.1  CDS  gene_syn T15G18.1, T15G18_1  go_process apoptosis|GO:0006915||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component cellular_component|GO:0005575||ND  go_process defense response|GO:0006952||ISS  product disease resistance protein (NBS-LRR class), putative  note disease resistance protein (NBS-LRR class), putative; FUNCTIONS IN: protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G48770.1); Has 10732 Blast hits to 8720 proteins in 370 species: Archae - 8; Bacteria - 530; Metazoa - 1334; Fungi - 47; Plants - 8514; Viruses - 4; Other Eukaryotes - 295 (source: NCBI BLink).  protein_id AT4G09360.1p  transcript_id AT4G09360.1  protein_id AT4G09360.1p  transcript_id AT4G09360.1  
At4g09370	chr4:005943640	0.0	W/5943640-5946070	AT4G09370.1  mRNA_TE_gene  pseudo  gene_syn T15G18.210, T15G18_210  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23930.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G37390.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G47330.1); similar to hypothetical protein 23.t00036 [Brassica oleracea] (GB:ABD65624.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048)  
At4g09380	chr4:005946583	0.0	C/5946583-5950874	AT4G09380.1  mRNA_TE_gene  pseudo  gene_syn T15G18.200, T15G18_200  note Transposable element gene, Mutator-like transposase family, has a 2.2e-75 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g09390	chr4:005951916	0.0	W/5951916-5952888	AT4G09390.1  mRNA_TE_gene  pseudo  gene_syn T15G18.190, T15G18_190  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G04400.1); similar to hypothetical protein AaeL_AAEL002786 [Aedes aegypti] (GB:EAT45973.1)  
At4g09400	chr4:005953226	0.0	C/5953226-5958057	AT4G09400.1  mRNA_TE_gene  pseudo  gene_syn T15G18.180, T15G18_180  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G33230.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At4g09410	chr4:005958513	0.0	C/5958513-5961076	AT4G09410.1  mRNA_TE_gene  pseudo  gene_syn T15G18.170, T15G18_170  note Transposable element gene, Mutator-like transposase family, has a 1.4e-40 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g09420	chr4:005963322	0.0	C/5963322-5963776,5962319-5963237	AT4G09420.1  CDS  gene_syn T15G18.160, T15G18_160  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS class), putative  note disease resistance protein (TIR-NBS class), putative; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: shoot apex, leaf whorl, cotyledon, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, 4 leaf senescence stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS class), putative (TAIR:AT1G72850.1); Has 5786 Blast hits to 5719 proteins in 204 species: Archae - 0; Bacteria - 43; Metazoa - 6; Fungi - 0; Plants - 5734; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G09420.1p  transcript_id AT4G09420.1  protein_id AT4G09420.1p  transcript_id AT4G09420.1  
At4g09425	chr4:005966131	0.0	W/5966131-5970177	AT4G09425.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 5.0e-309 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At4g09430	chr4:005970932	0.0	W/5970932-5971401,5971836-5972922,5973107-5973316,5973422-5974561,5975163-5975375	AT4G09430.1  CDS  gene_syn T15G18.150, T15G18_150  go_component chloroplast|GO:0009507|18431481|IDA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: ATP binding / protein binding / transmembrane receptor (TAIR:AT1G72840.1); Has 14373 Blast hits to 10835 proteins in 408 species: Archae - 6; Bacteria - 686; Metazoa - 1932; Fungi - 14; Plants - 11434; Viruses - 2; Other Eukaryotes - 299 (source: NCBI BLink).  protein_id AT4G09430.1p  transcript_id AT4G09430.1  protein_id AT4G09430.1p  transcript_id AT4G09430.1  
At4g09440	chr4:005982215	0.0	C/5982215-5982748	AT4G09440.1  CDS  gene_syn T15G18.140, T15G18_140  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF577 (InterPro:IPR007598); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G37470.1); Has 39 Blast hits to 30 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G09440.1p  transcript_id AT4G09440.1  protein_id AT4G09440.1p  transcript_id AT4G09440.1  
At4g09450	chr4:005983277	0.0	W/5983277-5983572,5984194-5984500	AT4G09450.1  CDS  gene_syn T15G18.130, T15G18_130  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT3G10580.2); Has 774 Blast hits to 772 proteins in 64 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 702; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT4G09450.1p  transcript_id AT4G09450.1  protein_id AT4G09450.1p  transcript_id AT4G09450.1  
At4g09452	chr4:005985822	0.0	W/5985822-5986654	AT4G09452.1  pseudogenic_transcript  pseudo  function Pseudogene of AT2G38590; F-box family protein  
At4g09455	chr4:005987419	0.0	W/5987419-5991819	AT4G09455.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.2e-236 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)  
At4g09460	chr4:005993019	0.0	W/5993019-5993281,5993591-5994038	AT4G09460.1  CDS  gene_syn ATMYB6, AtMYB6, T15G18.120, T15G18_120, myb domain protein 6  gene ATMYB6  function Encodes myb6 DNA-binding protein.  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677|8580966|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ATMYB6; DNA binding / transcription factor  note ATMYB6; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 9 processes; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: HOS10 (HIGH RESPONSE TO OSMOTIC STRESS 10); DNA binding / transcription regulator (TAIR:AT1G35515.1); Has 6427 Blast hits to 5940 proteins in 352 species: Archae - 0; Bacteria - 0; Metazoa - 670; Fungi - 284; Plants - 3888; Viruses - 3; Other Eukaryotes - 1582 (source: NCBI BLink).  protein_id AT4G09460.1p  transcript_id AT4G09460.1  protein_id AT4G09460.1p  transcript_id AT4G09460.1  
At4g09462	chr4:005996860	0.0	W/5996860-5997204	AT4G09462.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09467.1); Has 742 Blast hits to 706 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 742; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G09462.1p  transcript_id AT4G09462.1  protein_id AT4G09462.1p  transcript_id AT4G09462.1  
At4g09464	chr4:005999131	0.0	W/5999131-5999481	AT4G09464.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09467.1); Has 743 Blast hits to 707 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 742; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G09464.1p  transcript_id AT4G09464.1  protein_id AT4G09464.1p  transcript_id AT4G09464.1  
At4g09465	chr4:006001411	0.0	W/6001411-6001761	AT4G09465.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09467.1); Has 743 Blast hits to 707 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 742; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G09465.1p  transcript_id AT4G09465.1  protein_id AT4G09465.1p  transcript_id AT4G09465.1  
At4g09466	chr4:006003690	0.0	W/6003690-6004040	AT4G09466.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09467.1); Has 706 Blast hits to 670 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 706; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G09466.1p  transcript_id AT4G09466.1  protein_id AT4G09466.1p  transcript_id AT4G09466.1  
At4g09467	chr4:006005965	0.0	W/6005965-6006315	AT4G09467.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09464.1); Has 743 Blast hits to 707 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 742; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G09467.1p  transcript_id AT4G09467.1  protein_id AT4G09467.1p  transcript_id AT4G09467.1  
At4g09468	chr4:006007688	0.0	W/6007688-6007885	AT4G09468.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G16740; ribosomal protein L20 family protein  
At4g09470	chr4:006010997	0.0	C/6010997-6011446	AT4G09470.1  pseudogenic_transcript  pseudo  gene_syn T15G18.110, T15G18_110  function Encodes a ECA1 gametogenesis related family protein [pseudogene]  
At4g09480	chr4:006013018	0.0	W/6013018-6014417	AT4G09480.1  mRNA_TE_gene  pseudo  gene_syn T15G18.100, T15G18_100  note Transposable element gene, copia-like retrotransposon family, has a 4.8e-45 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At4g09490	chr4:006016562	0.0	C/6016562-6016575,6016094-6016146,6015583-6016028	AT4G09490.1  CDS  gene_syn T15G18.90, T15G18_90  go_component endomembrane system|GO:0012505||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function ribonuclease H activity|GO:0004523||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function ribonuclease H activity|GO:0004523||ISS  product RNase H domain-containing protein  note RNase H domain-containing protein; FUNCTIONS IN: ribonuclease H activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Ribonuclease H (InterPro:IPR002156); BEST Arabidopsis thaliana protein match is: nucleic acid binding / ribonuclease H (TAIR:AT1G10000.1); Has 102 Blast hits to 102 proteins in 7 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G09490.1p  transcript_id AT4G09490.1  protein_id AT4G09490.1p  transcript_id AT4G09490.1  
At4g09500	chr4:006018250	0.0	W/6018250-6018868,6018944-6019578	AT4G09500.1  CDS  gene_syn T15G18.80, T15G18_80  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyltransferase family protein  note glycosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: glycosyltransferase family protein (TAIR:AT2G22930.1); Has 2927 Blast hits to 2889 proteins in 176 species: Archae - 0; Bacteria - 6; Metazoa - 353; Fungi - 6; Plants - 2549; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT4G09500.1p  transcript_id AT4G09500.1  protein_id AT4G09500.1p  transcript_id AT4G09500.1  
At4g09500	chr4:006018250	0.0	W/6018250-6019578	AT4G09500.2  CDS  gene_syn T15G18.80, T15G18_80  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyltransferase family protein  note glycosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: glycosyltransferase family protein (TAIR:AT2G22930.1); Has 2943 Blast hits to 2917 proteins in 180 species: Archae - 0; Bacteria - 11; Metazoa - 372; Fungi - 6; Plants - 2541; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT4G09500.2p  transcript_id AT4G09500.2  protein_id AT4G09500.2p  transcript_id AT4G09500.2  
At4g09510	chr4:006022921	0.0	C/6022921-6023310,6022408-6022839,6022133-6022323,6021679-6022051	AT4G09510.2  CDS  gene_syn T15G18.70, T15G18_70  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function beta-fructofuranosidase activity|GO:0004564||ISS  product beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative  note beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative; FUNCTIONS IN: catalytic activity, beta-fructofuranosidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Plant neutral invertase (InterPro:IPR006937), Six-hairpin glycosidase-like (InterPro:IPR008928); BEST Arabidopsis thaliana protein match is: CINV1 (cytosolic invertase 1); beta-fructofuranosidase (TAIR:AT1G35580.3); Has 483 Blast hits to 483 proteins in 70 species: Archae - 0; Bacteria - 91; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 225 (source: NCBI BLink).  protein_id AT4G09510.2p  transcript_id AT4G09510.2  protein_id AT4G09510.2p  transcript_id AT4G09510.2  
At4g09510	chr4:006022921	0.0	C/6022921-6023310,6022408-6022839,6022133-6022323,6021684-6022051,6021312-6021607	AT4G09510.1  CDS  gene_syn T15G18.70, T15G18_70  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function beta-fructofuranosidase activity|GO:0004564||ISS  product beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative  note beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative; FUNCTIONS IN: catalytic activity, beta-fructofuranosidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Plant neutral invertase (InterPro:IPR006937), Six-hairpin glycosidase-like (InterPro:IPR008928); BEST Arabidopsis thaliana protein match is: CINV1 (cytosolic invertase 1); beta-fructofuranosidase (TAIR:AT1G35580.2); Has 527 Blast hits to 526 proteins in 78 species: Archae - 0; Bacteria - 106; Metazoa - 0; Fungi - 0; Plants - 174; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).  protein_id AT4G09510.1p  transcript_id AT4G09510.1  protein_id AT4G09510.1p  transcript_id AT4G09510.1  
At4g09520	chr4:006026452	0.0	C/6026452-6026751,6026233-6026378,6025879-6026155,6025522-6025794,6024970-6025452	AT4G09520.1  CDS  gene_syn T15G18.60, T15G18_60  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function phosphoglycerate mutase activity|GO:0004619||ISS  product catalytic/ metal ion binding / phosphoglycerate mutase  note catalytic/ metal ion binding / phosphoglycerate mutase; FUNCTIONS IN: phosphoglycerate mutase activity, catalytic activity, metal ion binding; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cofactor-independent phosphoglycerate mutase, archaeal (InterPro:IPR004456), Metalloenzyme (InterPro:IPR006124), Alkaline-phosphatase-like, core domain (InterPro:IPR017850); BEST Arabidopsis thaliana protein match is: 2,3-biphosphoglycerate-independent phosphoglycerate mutase-related / phosphoglyceromutase-related (TAIR:AT3G30841.1); Has 535 Blast hits to 534 proteins in 195 species: Archae - 193; Bacteria - 214; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).  protein_id AT4G09520.1p  transcript_id AT4G09520.1  protein_id AT4G09520.1p  transcript_id AT4G09520.1  
At4g09530	chr4:006029413	0.0	C/6029413-6029724	AT4G09530.1  CDS  gene_syn T15G18.50, T15G18_50  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT3G20220.1); Has 586 Blast hits to 577 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 585; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G09530.1p  transcript_id AT4G09530.1  protein_id AT4G09530.1p  transcript_id AT4G09530.1  
At4g09540	chr4:006034707	0.0	W/6034707-6036406	AT4G09540.1  mRNA_TE_gene  pseudo  gene_syn T15G18.40, T15G18_40  note Transposable element gene, copia-like retrotransposon family, has a 1.7e-43 P-value blast match to GB:AAC64917 gag-pol polyprotein (Ty1_Copia-element) (Glycine max)  
At4g09545	chr4:006037569	0.0	W/6037569-6037937	AT4G09545.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42895.1); Has 67 Blast hits to 64 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G09545.1p  transcript_id AT4G09545.1  protein_id AT4G09545.1p  transcript_id AT4G09545.1  
At4g09550	chr4:006039706	0.0	W/6039706-6039921	AT4G09550.1  CDS  gene_syn T15G18.30, T15G18_30  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G73790.1); Has 152 Blast hits to 152 proteins in 69 species: Archae - 0; Bacteria - 0; Metazoa - 45; Fungi - 38; Plants - 40; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT4G09550.1p  transcript_id AT4G09550.1  protein_id AT4G09550.1p  transcript_id AT4G09550.1  
At4g09560	chr4:006043561	0.0	C/6043561-6043681,6042852-6043088,6042317-6042721,6041652-6042235	AT4G09560.1  CDS  gene_syn T15G18.20, T15G18_20  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function peptidase activity|GO:0008233||ISS  go_function zinc ion binding|GO:0008270||ISS  product peptidase/ protein binding / zinc ion binding  note peptidase/ protein binding / zinc ion binding; FUNCTIONS IN: peptidase activity, protein binding, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protease-associated zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G71980.1); Has 5726 Blast hits to 5689 proteins in 236 species: Archae - 0; Bacteria - 70; Metazoa - 1858; Fungi - 430; Plants - 2574; Viruses - 10; Other Eukaryotes - 784 (source: NCBI BLink).  protein_id AT4G09560.1p  transcript_id AT4G09560.1  protein_id AT4G09560.1p  transcript_id AT4G09560.1  
At4g09565	chr4:006046293	0.0	W/6046293-6047588	AT4G09565.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.8e-08 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element)  
At4g09570	chr4:006049560	0.0	W/6049560-6050097,6050640-6050783,6050873-6051025,6051127-6051242,6051455-6051622,6051710-6051934,6052023-6052184	AT4G09570.1  CDS  gene_syn ATCPK4, CPK4, T25P22.10, T25P22_10  gene CPK4  function Encodes a member of Calcium Dependent Protein Kinase (CDPK) gene family.Positive regulator of ABA signaling. Phosphorylates ABA responsive transcription factors ABF1 and ABF4.  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process positive regulation of abscisic acid mediated signaling|GO:0009789|17921317|IMP  go_function protein kinase activity|GO:0004672|17921317|IDA  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  go_function kinase activity|GO:0016301||ISS  product CPK4; calmodulin-dependent protein kinase/ kinase/ protein kinase  note CPK4; FUNCTIONS IN: protein kinase activity, calmodulin-dependent protein kinase activity, kinase activity; INVOLVED IN: positive regulation of abscisic acid mediated signaling, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2); calmodulin-dependent protein kinase/ kinase (TAIR:AT1G35670.1); Has 98853 Blast hits to 91911 proteins in 2921 species: Archae - 73; Bacteria - 7947; Metazoa - 42334; Fungi - 12611; Plants - 15847; Viruses - 545; Other Eukaryotes - 19496 (source: NCBI BLink).  protein_id AT4G09570.1p  transcript_id AT4G09570.1  protein_id AT4G09570.1p  transcript_id AT4G09570.1  
At4g09580	chr4:006054024	0.0	C/6054024-6054313,6053181-6053451,6052927-6053097,6052721-6052852	AT4G09580.1  CDS  gene_syn T25P22.20, T25P22_20  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G71940.1); Has 2023 Blast hits to 2023 proteins in 496 species: Archae - 2; Bacteria - 1014; Metazoa - 198; Fungi - 27; Plants - 131; Viruses - 0; Other Eukaryotes - 651 (source: NCBI BLink).  protein_id AT4G09580.1p  transcript_id AT4G09580.1  protein_id AT4G09580.1p  transcript_id AT4G09580.1  
At4g09584	chr4:006059809	0.0	W/6059809-6061465	AT4G09584.1  pseudogenic_transcript  pseudo  function unknown pseudogene  
At4g09587	chr4:006062978	0.0	W/6062978-6063118	AT4G09587.1  CDS  go_component mitochondrion|GO:0005739||IEA  product unknown protein  note unknown protein; LOCATED IN: mitochondrion; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G09587.1p  transcript_id AT4G09587.1  protein_id AT4G09587.1p  transcript_id AT4G09587.1  
At4g09590	chr4:006066128	0.0	W/6066128-6066763	AT4G09590.1  CDS  gene_syn NDR1/HIN1-like 22, NHL22, T25P22.30, T25P22_30  gene NHL22  function Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not detected under normal conditions and in response to cucumber mosaic virus or spermine.  go_component cellular_component|GO:0005575||ND  go_process response to virus|GO:0009615|14666423|IEP  go_function molecular_function|GO:0003674||ND  product NHL22  note NHL22; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to virus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: harpin-induced family protein / HIN1 family protein / harpin-responsive family protein (TAIR:AT2G35970.1); Has 557 Blast hits to 557 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 557; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G09590.1p  transcript_id AT4G09590.1  protein_id AT4G09590.1p  transcript_id AT4G09590.1  
At4g09595	chr4:006067926	0.0	W/6067926-6072006	AT4G09595.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 3.6e-299 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At4g09600	chr4:006073454	0.0	C/6073454-6073516,6073298-6073352,6073014-6073195	AT4G09600.1  CDS  gene_syn GASA3, GAST1 PROTEIN HOMOLOG 3, T25P22.40, T25P22_40  gene GASA3  function One of GASA gene family which is related to a GA-stimulated transcript (GAST) from tomato.  go_component endomembrane system|GO:0012505||IEA  go_process response to gibberellin stimulus|GO:0009739|7727751|TAS  go_process response to gibberellin stimulus|GO:0009739||ISS  go_function molecular_function|GO:0003674||ND  product GASA3 (GAST1 PROTEIN HOMOLOG 3)  note GAST1 PROTEIN HOMOLOG 3 (GASA3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to gibberellin stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: fruit, leaf, seed; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: GASA2 (GAST1 PROTEIN HOMOLOG 2) (TAIR:AT4G09610.1); Has 250 Blast hits to 250 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 250; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G09600.1p  transcript_id AT4G09600.1  protein_id AT4G09600.1p  transcript_id AT4G09600.1  
At4g09610	chr4:006075511	0.0	C/6075511-6075573,6075359-6075413,6074927-6075108	AT4G09610.1  CDS  gene_syn GASA2, GAST1 PROTEIN HOMOLOG, GAST1 PROTEIN HOMOLOG 2, T25P22.50, T25P22_50  gene GASA2  go_component endomembrane system|GO:0012505||IEA  go_process response to gibberellin stimulus|GO:0009739||ISS  go_function molecular_function|GO:0003674||ND  product GASA2 (GAST1 PROTEIN HOMOLOG 2)  note GAST1 PROTEIN HOMOLOG 2 (GASA2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to gibberellin stimulus; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: GASA3 (GAST1 PROTEIN HOMOLOG 3) (TAIR:AT4G09600.1); Has 250 Blast hits to 250 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 250; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G09610.1p  transcript_id AT4G09610.1  protein_id AT4G09610.1p  transcript_id AT4G09610.1  
At4g09620	chr4:006078897	0.0	C/6078897-6078899,6077774-6077845,6077122-6077685	AT4G09620.1  CDS  gene_syn T25P22.60, T25P22_60  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); Has 120 Blast hits to 97 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT4G09620.1p  transcript_id AT4G09620.1  protein_id AT4G09620.1p  transcript_id AT4G09620.1  
At4g09625	chr4:006079879	0.0	C/6079879-6082242	AT4G09625.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 9.1e-76 P-value blast match to O22278 /203-375 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g09630	chr4:006083860	0.0	W/6083860-6084166,6084302-6085039,6085123-6085478,6086144-6086355,6086632-6086888,6087364-6087542,6087716-6087802	AT4G09630.1  CDS  gene_syn T25P22.70, T25P22_70  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF616 (InterPro:IPR006852); BEST Arabidopsis thaliana protein match is: EMB2756 (EMBRYO DEFECTIVE 2756) (TAIR:AT1G34550.1); Has 2910 Blast hits to 2214 proteins in 235 species: Archae - 17; Bacteria - 119; Metazoa - 666; Fungi - 192; Plants - 194; Viruses - 70; Other Eukaryotes - 1652 (source: NCBI BLink).  protein_id AT4G09630.1p  transcript_id AT4G09630.1  protein_id AT4G09630.1p  transcript_id AT4G09630.1  
At4g09640	chr4:006090442	0.0	C/6090442-6090604,6090170-6090226,6089935-6090025,6089647-6089807,6089406-6089533,6089184-6089321,6088983-6089075,6088734-6088854,6088433-6088641	AT4G09640.1  CDS  gene_syn T25P22.80, T25P22_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF803 (InterPro:IPR008521); BEST Arabidopsis thaliana protein match is: permease-related (TAIR:AT1G34470.1); Has 864 Blast hits to 850 proteins in 148 species: Archae - 2; Bacteria - 54; Metazoa - 361; Fungi - 239; Plants - 141; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT4G09640.1p  transcript_id AT4G09640.1  protein_id AT4G09640.1p  transcript_id AT4G09640.1  
At4g09644	chr4:006093610	0.0	C/6093610-6094887	AT4G09644.1  pseudogenic_transcript  pseudo  function Encodes a defensin-like (DEFL) family protein.  
At4g09647	chr4:006097928	0.0	C/6097928-6097988,6096725-6096909	AT4G09647.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G09647.1p  transcript_id AT4G09647.1  protein_id AT4G09647.1p  transcript_id AT4G09647.1  
At4g09649	chr4:006100561	0.0	C/6100561-6100698	AT4G09649.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G09649.1p  transcript_id AT4G09649.1  protein_id AT4G09649.1p  transcript_id AT4G09649.1  
At4g09650	chr4:006100799	0.0	W/6100799-6101503	AT4G09650.1  CDS  gene_syn ATP SYNTHASE DELTA-SUBUNIT GENE, ATPD, T25P22.90, T25P22_90  gene ATPD  function Encodes the chloroplast ATPase delta-subunit.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_function hydrogen ion transporting ATP synthase activity, rotational mechanism|GO:0046933||IEA  go_function proton-transporting ATPase activity, rotational mechanism|GO:0046961||IEA  go_component plastoglobule|GO:0010287|16414959|IDA  go_component plastoglobule|GO:0010287|16461379|IDA  go_component stromule|GO:0010319|16923014|IDA  go_process response to cold|GO:0009409|16923014|IEP  go_process photosynthetic electron transport in photosystem II|GO:0009772|12970486|IMP  go_process photosynthetic electron transport in photosystem I|GO:0009773|12970486|IMP  go_process photosynthesis|GO:0015979|12970486|IMP  product ATPD (ATP SYNTHASE DELTA-SUBUNIT GENE); hydrogen ion transporting ATP synthase, rotational mechanism / proton-transporting ATPase, rotational mechanism  note ATP SYNTHASE DELTA-SUBUNIT GENE (ATPD); FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: response to cold, defense response to bacterium, photosynthetic electron transport in photosystem II, photosynthetic electron transport in photosystem I, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, OSCP/delta subunit (InterPro:IPR000711); BEST Arabidopsis thaliana protein match is: ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative (TAIR:AT5G13450.1); Has 2816 Blast hits to 2816 proteins in 788 species: Archae - 0; Bacteria - 1229; Metazoa - 129; Fungi - 79; Plants - 95; Viruses - 0; Other Eukaryotes - 1284 (source: NCBI BLink).  protein_id AT4G09650.1p  transcript_id AT4G09650.1  protein_id AT4G09650.1p  transcript_id AT4G09650.1  
At4g09660	chr4:006104446	0.0	W/6104446-6104899,6105008-6105508,6105568-6106607	AT4G09660.1  CDS  gene_syn F17A8.10, F17A8_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, TTF-type (InterPro:IPR006580); BEST Arabidopsis thaliana protein match is: hAT dimerisation domain-containing protein (TAIR:AT1G19260.1); Has 372 Blast hits to 344 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 216; Fungi - 0; Plants - 156; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G09660.1p  transcript_id AT4G09660.1  protein_id AT4G09660.1p  transcript_id AT4G09660.1  
At4g09670	chr4:006108585	0.0	C/6108585-6109049,6107382-6108005	AT4G09670.1  CDS  gene_syn F17A8.20, F17A8_20  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function oxidoreductase activity|GO:0016491||ISS  product oxidoreductase family protein  note oxidoreductase family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase, N-terminal (InterPro:IPR000683), Oxidoreductase, C-terminal (InterPro:IPR004104), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: oxidoreductase family protein (TAIR:AT1G34200.1); Has 10490 Blast hits to 10489 proteins in 1179 species: Archae - 137; Bacteria - 6095; Metazoa - 233; Fungi - 386; Plants - 50; Viruses - 0; Other Eukaryotes - 3589 (source: NCBI BLink).  protein_id AT4G09670.1p  transcript_id AT4G09670.1  protein_id AT4G09670.1p  transcript_id AT4G09670.1  
At4g09680	chr4:006116819	0.0	W/6116819-6117850,6117958-6118076,6118153-6118227,6118324-6118399,6118502-6118564,6118674-6118751,6118835-6119026,6119306-6119407,6119516-6119791,6119919-6120272,6120377-6120922,6120999-6121090,6121179-6121395,6121459-6121567,6122088-6122407,6122844-6123017	AT4G09680.1  CDS  gene_syn F17A8.30, F17A8_30  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 20 Blast hits to 13 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G09680.1p  transcript_id AT4G09680.1  protein_id AT4G09680.1p  transcript_id AT4G09680.1  
At4g09680	chr4:006116819	0.0	W/6116819-6117850,6117958-6118076,6118153-6118227,6118324-6118399,6118502-6118572,6118674-6118746	AT4G09680.2  CDS  gene_syn F17A8.30, F17A8_30  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 13 Blast hits to 13 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G09680.2p  transcript_id AT4G09680.2  protein_id AT4G09680.2p  transcript_id AT4G09680.2  
At4g09690	chr4:006124897	0.0	W/6124897-6125709,6125896-6126120	AT4G09690.1  CDS  gene_syn F17A8.40, F17A8_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT4G01760.1); Has 1428 Blast hits to 456 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 1416; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G09690.1p  transcript_id AT4G09690.1  protein_id AT4G09690.1p  transcript_id AT4G09690.1  
At4g09700	chr4:006126775	0.0	W/6126775-6127890	AT4G09700.1  mRNA_TE_gene  pseudo  gene_syn F17A8.50, F17A8_50  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G06820.1); similar to 80C09_29 [Brassica rapa subsp. pekinensis] (GB:AAZ41840.1)  
At4g09710	chr4:006128688	0.0	W/6128688-6132598	AT4G09710.1  mRNA_TE_gene  pseudo  gene_syn F17A8.60, F17A8_60  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 4.7e-40 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At4g09720	chr4:006133101	0.0	W/6133101-6133153,6133247-6133273,6133383-6133482,6133573-6133719,6133808-6133827,6133994-6134006,6134288-6134368,6134449-6134594,6134893-6134959	AT4G09720.3  CDS  gene_syn ATRABG3A, F17A8.70, F17A8_70  gene ATRABG3A  go_process intracellular protein transport|GO:0006886||IEA  go_process nucleocytoplasmic transport|GO:0006913||IEA  go_process signal transduction|GO:0007165||IEA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTPase activity|GO:0003924||IEA  go_function protein binding|GO:0005515||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product Ras-related GTP-binding protein, putative  note ATRABG3A; FUNCTIONS IN: protein binding, GTP binding, GTPase activity; INVOLVED IN: intracellular protein transport, signal transduction, nucleocytoplasmic transport, protein transport, small GTPase mediated signal transduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Ras small GTPase, Rho type (InterPro:IPR003578), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RABG3B; GTP binding (TAIR:AT1G22740.1).  protein_id AT4G09720.3p  transcript_id AT4G09720.3  protein_id AT4G09720.3p  transcript_id AT4G09720.3  
At4g09720	chr4:006133101	0.0	W/6133101-6133153,6133247-6133273,6133383-6133482,6133573-6133719,6134288-6134368,6134449-6134594,6134893-6134959	AT4G09720.1  CDS  gene_syn ATRABG3A, F17A8.70, F17A8_70  gene ATRABG3A  go_component plasma membrane|GO:0005886|17151019|IDA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product Ras-related GTP-binding protein, putative  note ATRABG3A; FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RABG3B; GTP binding (TAIR:AT1G22740.1); Has 20696 Blast hits to 20674 proteins in 592 species: Archae - 27; Bacteria - 91; Metazoa - 11312; Fungi - 2693; Plants - 1773; Viruses - 19; Other Eukaryotes - 4781 (source: NCBI BLink).  protein_id AT4G09720.1p  transcript_id AT4G09720.1  protein_id AT4G09720.1p  transcript_id AT4G09720.1  
At4g09720	chr4:006133405	0.0	W/6133405-6133482,6133573-6133719,6134288-6134368,6134449-6134594,6134893-6134959	AT4G09720.2  CDS  gene_syn ATRABG3A, F17A8.70, F17A8_70  gene ATRABG3A  go_component plasma membrane|GO:0005886|17151019|IDA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product Ras-related GTP-binding protein, putative  note ATRABG3A; FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Ras small GTPase, Rab type (InterPro:IPR003579), Ras (InterPro:IPR013753); BEST Arabidopsis thaliana protein match is: RABG3B; GTP binding (TAIR:AT1G22740.1); Has 17017 Blast hits to 16998 proteins in 517 species: Archae - 2; Bacteria - 41; Metazoa - 8729; Fungi - 2255; Plants - 1719; Viruses - 19; Other Eukaryotes - 4252 (source: NCBI BLink).  protein_id AT4G09720.2p  transcript_id AT4G09720.2  protein_id AT4G09720.2p  transcript_id AT4G09720.2  
At4g09730	chr4:006136333	0.0	W/6136333-6136848,6137117-6137212,6137466-6137654,6137751-6137891,6138026-6138166,6138318-6138460,6138559-6138688,6138799-6138847,6139050-6139510	AT4G09730.1  CDS  gene_syn F17A8.80, F17A8_80  go_component chloroplast|GO:0009507|18431481|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD/DEAH box helicase, putative  note DEAD/DEAH box helicase, putative; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (TAIR:AT3G06980.1); Has 26614 Blast hits to 26065 proteins in 1716 species: Archae - 427; Bacteria - 10484; Metazoa - 4922; Fungi - 3195; Plants - 1331; Viruses - 9; Other Eukaryotes - 6246 (source: NCBI BLink).  protein_id AT4G09730.1p  transcript_id AT4G09730.1  protein_id AT4G09730.1p  transcript_id AT4G09730.1  
At4g09731	chr4:006139717	0.0	W/6139717-6139851	AT4G09731.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G09731.1p  transcript_id AT4G09731.1  protein_id AT4G09731.1p  transcript_id AT4G09731.1  
At4g09740	chr4:006144812	0.0	C/6144812-6145003,6144464-6144676,6144026-6144226,6143854-6143931,6143603-6143755,6143375-6143483,6143108-6143274,6142706-6143029	AT4G09740.1  CDS  gene_syn Arabidopsis thaliana glycosyl hydrolase 9B14, AtGH9B14, F17A8.90, F17A8_90  gene AtGH9B14  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product AtGH9B14 (Arabidopsis thaliana glycosyl hydrolase 9B14); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds  note Arabidopsis thaliana glycosyl hydrolase 9B14 (AtGH9B14); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: AtGH9B15 (Arabidopsis thaliana glycosyl hydrolase 9B15); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT4G23560.1); Has 1173 Blast hits to 1168 proteins in 192 species: Archae - 0; Bacteria - 380; Metazoa - 124; Fungi - 14; Plants - 624; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT4G09740.1p  transcript_id AT4G09740.1  protein_id AT4G09740.1p  transcript_id AT4G09740.1  
At4g09745	chr4:006145987	0.0	C/6145987-6146574	AT4G09745.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to putative AP endonuclease/reverse transcriptase, similar to putative non-LTR retroelement reverse transcriptase; blastp match of 31% identity and 4.1e-08 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}  
At4g09750	chr4:006146770	0.0	W/6146770-6146784,6146882-6146943,6147181-6147300,6147397-6147496,6147581-6147661,6147734-6147783,6147870-6148020,6148151-6148207,6148279-6148400,6148488-6148698	AT4G09750.1  CDS  gene_syn F17A8.100, F17A8_100  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT4G24050.1); Has 49720 Blast hits to 49652 proteins in 1938 species: Archae - 292; Bacteria - 27546; Metazoa - 4870; Fungi - 3259; Plants - 1240; Viruses - 0; Other Eukaryotes - 12513 (source: NCBI BLink).  protein_id AT4G09750.1p  transcript_id AT4G09750.1  protein_id AT4G09750.1p  transcript_id AT4G09750.1  
At4g09760	chr4:006150797	0.0	C/6150797-6151150,6149970-6150091,6149592-6149883	AT4G09760.3  CDS  gene_syn F17A8.110, F17A8_110  function encodes a choline synthase whose gene expression is induced by high salt and mannitol.  go_process response to osmotic stress|GO:0006970|15147879|IEP  go_process response to salt stress|GO:0009651|15147879|IEP  go_function choline kinase activity|GO:0004103||ISS  product choline kinase, putative  note choline kinase, putative; FUNCTIONS IN: choline kinase activity; INVOLVED IN: response to salt stress, response to osmotic stress; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Choline kinase, N-terminal (InterPro:IPR007521), Choline/ethanolamine kinase (InterPro:IPR002573), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATCK1 (CHOLINE KINASE 1); choline kinase (TAIR:AT1G71697.1); Has 697 Blast hits to 697 proteins in 154 species: Archae - 0; Bacteria - 8; Metazoa - 325; Fungi - 146; Plants - 83; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).  protein_id AT4G09760.3p  transcript_id AT4G09760.3  protein_id AT4G09760.3p  transcript_id AT4G09760.3  
At4g09760	chr4:006150797	0.0	C/6150797-6151150,6149970-6150091,6149691-6149883,6149384-6149501,6149147-6149295,6148955-6149059	AT4G09760.1  CDS  gene_syn F17A8.110, F17A8_110  function encodes a choline synthase whose gene expression is induced by high salt and mannitol.  go_process response to osmotic stress|GO:0006970|15147879|IEP  go_process response to salt stress|GO:0009651|15147879|IEP  go_function choline kinase activity|GO:0004103||ISS  product choline kinase, putative  note choline kinase, putative; FUNCTIONS IN: choline kinase activity; INVOLVED IN: response to salt stress, response to osmotic stress; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Choline kinase, N-terminal (InterPro:IPR007521), Choline/ethanolamine kinase (InterPro:IPR002573), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATCK1 (CHOLINE KINASE 1); choline kinase (TAIR:AT1G71697.1); Has 1158 Blast hits to 1106 proteins in 242 species: Archae - 0; Bacteria - 225; Metazoa - 383; Fungi - 162; Plants - 83; Viruses - 0; Other Eukaryotes - 305 (source: NCBI BLink).  protein_id AT4G09760.1p  transcript_id AT4G09760.1  protein_id AT4G09760.1p  transcript_id AT4G09760.1  
At4g09760	chr4:006150797	0.0	C/6150797-6151150,6149970-6150091,6149691-6149883,6149384-6149501,6149147-6149295,6148955-6149059	AT4G09760.2  CDS  gene_syn F17A8.110, F17A8_110  function encodes a choline synthase whose gene expression is induced by high salt and mannitol.  go_process response to osmotic stress|GO:0006970|15147879|IEP  go_process response to salt stress|GO:0009651|15147879|IEP  go_function choline kinase activity|GO:0004103||ISS  product choline kinase, putative  note choline kinase, putative; FUNCTIONS IN: choline kinase activity; INVOLVED IN: response to salt stress, response to osmotic stress; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Choline kinase, N-terminal (InterPro:IPR007521), Choline/ethanolamine kinase (InterPro:IPR002573), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATCK1 (CHOLINE KINASE 1); choline kinase (TAIR:AT1G71697.1); Has 1158 Blast hits to 1106 proteins in 242 species: Archae - 0; Bacteria - 225; Metazoa - 383; Fungi - 162; Plants - 83; Viruses - 0; Other Eukaryotes - 305 (source: NCBI BLink).  protein_id AT4G09760.2p  transcript_id AT4G09760.2  protein_id AT4G09760.2p  transcript_id AT4G09760.2  
At4g09770	chr4:006155738	0.0	C/6155738-6155859,6155485-6155645,6155050-6155332,6154793-6154953,6154534-6154700	AT4G09770.1  CDS  gene_syn F17A8.120, F17A8_120  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT4G09780.1); Has 443 Blast hits to 362 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 0; Plants - 379; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT4G09770.1p  transcript_id AT4G09770.1  protein_id AT4G09770.1p  transcript_id AT4G09770.1  
At4g09775	chr4:006156629	0.0	W/6156629-6157054	AT4G09775.1  CDS  product unknown protein  note BEST Arabidopsis thaliana protein match is: reverse transcriptase-related (TAIR:AT2G02650.1); Has 113 Blast hits to 113 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G09775.1p  transcript_id AT4G09775.1  protein_id AT4G09775.1p  transcript_id AT4G09775.1  
At4g09780	chr4:006161050	0.0	C/6161050-6161378,6160834-6160997,6160396-6160678,6160108-6160301,6159901-6160048,6159538-6159751	AT4G09780.1  CDS  gene_syn F17A8.130, F17A8_130  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT4G09770.1); Has 293 Blast hits to 269 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 263; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT4G09780.1p  transcript_id AT4G09780.1  protein_id AT4G09780.1p  transcript_id AT4G09780.1  
At4g09784	chr4:006162253	0.0	W/6162253-6162340,6162435-6162499,6162554-6162613	AT4G09784.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: HDA15; histone deacetylase (TAIR:AT3G18520.2).  protein_id AT4G09784.1p  transcript_id AT4G09784.1  protein_id AT4G09784.1p  transcript_id AT4G09784.1  
At4g09790	chr4:006163414	0.0	C/6163414-6164655	AT4G09790.1  pseudogenic_transcript  pseudo  gene_syn F17A8.140, F17A8_140  function pseudogene of the F-box family protein  
At4g09795	chr4:006169635	0.0	W/6169635-6169683,6169831-6170015	AT4G09795.1  CDS  gene_syn LCR13, Low-molecular-weight cysteine-rich 13  gene LCR13  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR13 (Low-molecular-weight cysteine-rich 13)  note Low-molecular-weight cysteine-rich 13 (LCR13); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); BEST Arabidopsis thaliana protein match is: LCR28 (Low-molecular-weight cysteine-rich 28) (TAIR:AT5G42797.1); Has 19 Blast hits to 19 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G09795.1p  transcript_id AT4G09795.1  protein_id AT4G09795.1p  transcript_id AT4G09795.1  
At4g09800	chr4:006173818	0.0	W/6173818-6173820,6174178-6174338,6174576-6174764,6174858-6174963	AT4G09800.1  CDS  gene_syn F17A8.150, RPS18C, S18 RIBOSOMAL PROTEIN  gene RPS18C  function encodes a ribosomal protein S18C, a constituent of the small subunit of the ribosomal complex  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component small ribosomal subunit|GO:0015935||ISS  go_component small ribosomal subunit|GO:0015935||TAS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_process translation|GO:0006412||TAS  go_function structural constituent of ribosome|GO:0003735||ISS  product RPS18C (S18 RIBOSOMAL PROTEIN); RNA binding / nucleic acid binding / structural constituent of ribosome  note S18 RIBOSOMAL PROTEIN (RPS18C); FUNCTIONS IN: structural constituent of ribosome, RNA binding, nucleic acid binding; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, small ribosomal subunit, nucleolus, cell wall, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13, conserved site (InterPro:IPR018269), Ribosomal protein S13-like, H2TH (InterPro:IPR010979), Ribosomal protein S13 (InterPro:IPR001892); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S18 (RPS18B) (TAIR:AT1G34030.1); Has 5334 Blast hits to 5334 proteins in 1718 species: Archae - 163; Bacteria - 2780; Metazoa - 291; Fungi - 108; Plants - 309; Viruses - 0; Other Eukaryotes - 1683 (source: NCBI BLink).  protein_id AT4G09800.1p  transcript_id AT4G09800.1  protein_id AT4G09800.1p  transcript_id AT4G09800.1  
At4g09810	chr4:006176763	0.0	C/6176763-6176892,6176501-6176685,6176221-6176421,6175985-6176146,6175415-6175744	AT4G09810.1  CDS  gene_syn F17A8.160, F17A8_160  go_component membrane|GO:0016020|11152613|ISS  product transporter-related  note transporter-related; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: transporter-related (TAIR:AT1G34020.1); Has 1040 Blast hits to 1035 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 276; Fungi - 128; Plants - 515; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).  protein_id AT4G09810.1p  transcript_id AT4G09810.1  protein_id AT4G09810.1p  transcript_id AT4G09810.1  
At4g09820	chr4:006182067	0.0	W/6182067-6182203,6182423-6182674,6183056-6183152,6183341-6183355,6183438-6183494,6185179-6185425,6185510-6186261	AT4G09820.1  CDS  gene_syn F17A8.170, F17A8_170, TRANSPARENT TESTA 8, TT8  gene TT8  function TT8 is a regulation factor that acts in a concerted action with TT1, PAP1 and TTG1 on the regulation of flavonoid pathways, namely proanthocyanidin and anthocyanin biosynthesis. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Also important for important for marginal trichome development.  go_component nucleus|GO:0005634||IEA  go_process flavonoid biosynthetic process|GO:0009813|11041882|TAS  go_process proanthocyanidin biosynthetic process|GO:0010023|16709193|IEP  go_process trichome differentiation|GO:0010026|18784284|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product TT8 (TRANSPARENT TESTA 8); DNA binding / transcription factor  note TRANSPARENT TESTA 8 (TT8); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: trichome differentiation, proanthocyanidin biosynthetic process, flavonoid biosynthetic process; LOCATED IN: nucleus; EXPRESSED IN: stem, hypocotyl, micropylar endosperm; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: myc-related transcription factor (MYC1) (TAIR:AT4G00480.2); Has 1552 Blast hits to 1425 proteins in 149 species: Archae - 0; Bacteria - 2; Metazoa - 56; Fungi - 46; Plants - 1438; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT4G09820.1p  transcript_id AT4G09820.1  protein_id AT4G09820.1p  transcript_id AT4G09820.1  
At4g09830	chr4:006188866	0.0	W/6188866-6189024,6190089-6190169,6190256-6190591	AT4G09830.1  CDS  gene_syn F17A8.180, F17A8_180  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP009193 (InterPro:IPR016549); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64780.1); Has 56 Blast hits to 56 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G09830.1p  transcript_id AT4G09830.1  protein_id AT4G09830.1p  transcript_id AT4G09830.1  
At4g09840	chr4:006190948	0.0	C/6190948-6191268	AT4G09840.1  CDS  gene_syn F17A8.190, F17A8_190  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, leaf whorl, sepal, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage; Has 27 Blast hits to 26 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 4; Plants - 5; Viruses - 3; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G09840.1p  transcript_id AT4G09840.1  protein_id AT4G09840.1p  transcript_id AT4G09840.1  
At4g09840	chr4:006190948	0.0	C/6190948-6191268	AT4G09840.2  CDS  gene_syn F17A8.190, F17A8_190  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, leaf whorl, sepal, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage; Has 27 Blast hits to 26 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 4; Plants - 5; Viruses - 3; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G09840.2p  transcript_id AT4G09840.2  protein_id AT4G09840.2p  transcript_id AT4G09840.2  
At4g09850	chr4:006192512	0.0	W/6192512-6192574,6192978-6193130	AT4G09850.1  CDS  gene_syn F17A8.200, F17A8_200  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G09850.1p  transcript_id AT4G09850.1  protein_id AT4G09850.1p  transcript_id AT4G09850.1  
At4g09860	chr4:006195283	0.0	C/6195283-6195301,6195018-6195079,6194709-6194792	AT4G09860.1  CDS  gene_syn F17A8.210, F17A8_210  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G09860.1p  transcript_id AT4G09860.1  protein_id AT4G09860.1p  transcript_id AT4G09860.1  
At4g09870	chr4:006200089	0.0	W/6200089-6200211,6200325-6201215	AT4G09870.1  CDS  gene_syn F17A8.220, F17A8_220  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G47300.1); Has 516 Blast hits to 484 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 516; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G09870.1p  transcript_id AT4G09870.1  protein_id AT4G09870.1p  transcript_id AT4G09870.1  
At4g09875	chr4:006209726	0.0	C/6209726-6212148	AT4G09875.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to putative AP endonuclease/reverse transcriptase, similar to putative non-LTR retroelement reverse transcriptase; blastp match of 39% identity and 9.4e-31 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}  
At4g09880	chr4:006214624	0.0	W/6214624-6214656,6215126-6215338	AT4G09880.1  CDS  gene_syn T5L19.10, T5L19_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G09880.1p  transcript_id AT4G09880.1  protein_id AT4G09880.1p  transcript_id AT4G09880.1  
At4g09890	chr4:006218501	0.0	W/6218501-6218764	AT4G09890.1  CDS  gene_syn T5L19.20, T5L19_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G47480.1); Has 105 Blast hits to 105 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G09890.1p  transcript_id AT4G09890.1  protein_id AT4G09890.1p  transcript_id AT4G09890.1  
At4g09900	chr4:006223667	0.0	C/6223667-6223924,6222801-6223040,6222508-6222651,6222170-6222304,6221767-6222039	AT4G09900.1  CDS  gene_syn ARABIDOPSIS THALIANA METHYL ESTERASE 12, AT4G09910, ATMES12, MES12, METHYL ESTERASE 12, T5L19.30, T5L19_30  gene MES12  function Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.  go_function hydrolase activity|GO:0016787||ISS  product MES12 (METHYL ESTERASE 12); hydrolase  note METHYL ESTERASE 12 (MES12); FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: MES14 (METHYL ESTERASE 14); hydrolase (TAIR:AT1G33990.1); Has 1511 Blast hits to 1511 proteins in 314 species: Archae - 4; Bacteria - 726; Metazoa - 7; Fungi - 24; Plants - 342; Viruses - 0; Other Eukaryotes - 408 (source: NCBI BLink).  protein_id AT4G09900.1p  transcript_id AT4G09900.1  protein_id AT4G09900.1p  transcript_id AT4G09900.1  
At4g09920	chr4:006224691	0.0	W/6224691-6225527,6225792-6225905	AT4G09920.1  CDS  gene_syn T5L19.50, T5L19_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G10400.2); Has 1200 Blast hits to 1173 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1199; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G09920.1p  transcript_id AT4G09920.1  protein_id AT4G09920.1p  transcript_id AT4G09920.1  
At4g09930	chr4:006228556	0.0	W/6228556-6228598,6228743-6228952,6229036-6229307,6229409-6229576,6229652-6229780,6229863-6230048	AT4G09930.1  CDS  gene_syn T5L19.60, T5L19_60  go_function GTP binding|GO:0005525||IEA  go_component cellular_component|GO:0005575||ND  go_process response to bacterium|GO:0009617||ISS  product avirulence-responsive family protein / avirulence induced gene (AIG1) family protein  note avirulence-responsive family protein / avirulence induced gene (AIG1) family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: response to bacterium; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703); BEST Arabidopsis thaliana protein match is: avirulence-responsive family protein / avirulence induced gene (AIG1) family protein (TAIR:AT4G09940.1); Has 4012 Blast hits to 3173 proteins in 283 species: Archae - 16; Bacteria - 248; Metazoa - 1680; Fungi - 186; Plants - 220; Viruses - 19; Other Eukaryotes - 1643 (source: NCBI BLink).  protein_id AT4G09930.1p  transcript_id AT4G09930.1  protein_id AT4G09930.1p  transcript_id AT4G09930.1  
At4g09940	chr4:006231786	0.0	W/6231786-6232101,6232175-6232446,6232526-6232690,6232778-6232918,6233107-6233397	AT4G09940.1  CDS  gene_syn T5L19.70, T5L19_70  go_component plasma membrane|GO:0005886|17151019|IDA  go_function GTP binding|GO:0005525||IEA  go_process response to bacterium|GO:0009617||ISS  product avirulence-responsive family protein / avirulence induced gene (AIG1) family protein  note avirulence-responsive family protein / avirulence induced gene (AIG1) family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: response to bacterium; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703); BEST Arabidopsis thaliana protein match is: avirulence-responsive family protein / avirulence induced gene (AIG1) family protein (TAIR:AT4G09950.1); Has 20120 Blast hits to 13617 proteins in 806 species: Archae - 203; Bacteria - 1830; Metazoa - 9174; Fungi - 1129; Plants - 503; Viruses - 139; Other Eukaryotes - 7142 (source: NCBI BLink).  protein_id AT4G09940.1p  transcript_id AT4G09940.1  protein_id AT4G09940.1p  transcript_id AT4G09940.1  
At4g09950	chr4:006234762	0.0	W/6234762-6234987,6235277-6235545,6235629-6235796,6235879-6236016,6236103-6236312	AT4G09950.1  CDS  gene_syn T5L19.80, T5L19_80  go_function GTP binding|GO:0005525||IEA  go_component cellular_component|GO:0005575||ND  go_process response to bacterium|GO:0009617||ISS  product avirulence-responsive family protein / avirulence induced gene (AIG1) family protein  note avirulence-responsive family protein / avirulence induced gene (AIG1) family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: response to bacterium; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703); BEST Arabidopsis thaliana protein match is: avirulence-responsive family protein / avirulence induced gene (AIG1) family protein (TAIR:AT4G09940.1); Has 18633 Blast hits to 12885 proteins in 796 species: Archae - 316; Bacteria - 1899; Metazoa - 7664; Fungi - 1177; Plants - 507; Viruses - 103; Other Eukaryotes - 6967 (source: NCBI BLink).  protein_id AT4G09950.1p  transcript_id AT4G09950.1  protein_id AT4G09950.1p  transcript_id AT4G09950.1  
At4g09960	chr4:006239228	0.0	C/6239228-6239409,6237569-6237650,6237417-6237478,6237223-6237322,6236973-6237014,6236713-6236895	AT4G09960.2  CDS  gene_syn AGL11, SEEDSTICK, STK, T5L19.90, T5L19_90  gene STK  function a MADS box transcription factor expressed in the carpel and ovules  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process carpel development|GO:0048440|14555696|IMP  go_process ovule development|GO:0048481|14555696|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700|7549482|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function protein binding|GO:0005515|14555696|IPI  product STK (SEEDSTICK); protein binding / transcription factor  note SEEDSTICK (STK); FUNCTIONS IN: protein binding, transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, ovule development, carpel development; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: SHP2 (SHATTERPROOF 2); protein binding / transcription factor (TAIR:AT2G42830.1); Has 4977 Blast hits to 4973 proteins in 676 species: Archae - 0; Bacteria - 3; Metazoa - 554; Fungi - 211; Plants - 4149; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT4G09960.2p  transcript_id AT4G09960.2  protein_id AT4G09960.2p  transcript_id AT4G09960.2  
At4g09960	chr4:006239228	0.0	C/6239228-6239409,6237569-6237650,6237417-6237478,6237223-6237322,6237090-6237131,6236973-6237014,6236713-6236895	AT4G09960.1  CDS  gene_syn AGL11, SEEDSTICK, STK, T5L19.90, T5L19_90  gene STK  function a MADS box transcription factor expressed in the carpel and ovules  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process carpel development|GO:0048440|14555696|IMP  go_process ovule development|GO:0048481|14555696|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700|7549482|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function protein binding|GO:0005515|14555696|IPI  product STK (SEEDSTICK); protein binding / transcription factor  note SEEDSTICK (STK); FUNCTIONS IN: protein binding, transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, ovule development, carpel development; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: SHP2 (SHATTERPROOF 2); protein binding / transcription factor (TAIR:AT2G42830.1); Has 5170 Blast hits to 5167 proteins in 686 species: Archae - 0; Bacteria - 4; Metazoa - 558; Fungi - 209; Plants - 4317; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT4G09960.1p  transcript_id AT4G09960.1  protein_id AT4G09960.1p  transcript_id AT4G09960.1  
At4g09960	chr4:006240418	0.0	C/6240418-6240494,6239228-6239410,6237569-6237650,6237417-6237478,6237223-6237322,6237090-6237131,6236973-6237014,6236713-6236895	AT4G09960.3  CDS  gene_syn AGL11, SEEDSTICK, STK, T5L19.90, T5L19_90  gene STK  function a MADS box transcription factor expressed in the carpel and ovules  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process carpel development|GO:0048440|14555696|IMP  go_process ovule development|GO:0048481|14555696|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700|7549482|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function protein binding|GO:0005515|14555696|IPI  product STK (SEEDSTICK); protein binding / transcription factor  note SEEDSTICK (STK); FUNCTIONS IN: protein binding, transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, ovule development, carpel development; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: SHP2 (SHATTERPROOF 2); protein binding / transcription factor (TAIR:AT2G42830.1); Has 5178 Blast hits to 5175 proteins in 688 species: Archae - 0; Bacteria - 7; Metazoa - 563; Fungi - 209; Plants - 4317; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT4G09960.3p  transcript_id AT4G09960.3  protein_id AT4G09960.3p  transcript_id AT4G09960.3  
At4g09965	chr4:006245401	0.0	C/6245401-6245686,6245179-6245303,6244960-6245070,6244740-6244889	AT4G09965.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17030.1); Has 27 Blast hits to 27 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G09965.1p  transcript_id AT4G09965.1  protein_id AT4G09965.1p  transcript_id AT4G09965.1  
At4g09970	chr4:006245961	0.0	W/6245961-6245974,6246235-6246303,6246611-6246761,6246881-6246985,6247200-6247403,6247502-6247597	AT4G09970.2  CDS  gene_syn T5L19.100, T5L19_100  product unknown protein  note unknown protein; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G09970.2p  transcript_id AT4G09970.2  protein_id AT4G09970.2p  transcript_id AT4G09970.2  
At4g09970	chr4:006246038	0.0	W/6246038-6246139,6246227-6246303,6246611-6246761,6246881-6246985,6247200-6247403,6247484-6247597	AT4G09970.1  CDS  gene_syn T5L19.100, T5L19_100  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G09970.1p  transcript_id AT4G09970.1  protein_id AT4G09970.1p  transcript_id AT4G09970.1  
At4g09980	chr4:006250006	0.0	C/6250006-6252030,6249519-6249602,6249314-6249418,6249111-6249224	AT4G09980.2  CDS  gene_syn EMB1691, EMBRYO DEFECTIVE 1691, T5L19.110, T5L19_110  gene EMB1691  go_function nucleic acid binding|GO:0003676||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757||ISS  product EMB1691 (EMBRYO DEFECTIVE 1691); S-adenosylmethionine-dependent methyltransferase/ methyltransferase/ nucleic acid binding  note EMBRYO DEFECTIVE 1691 (EMB1691); FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity, nucleic acid binding; INVOLVED IN: embryonic development ending in seed dormancy; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: N-6 adenine-specific DNA methylase, conserved site (InterPro:IPR002052), MT-A70 (InterPro:IPR007757); BEST Arabidopsis thaliana protein match is: MTA (MRNA ADENOSINE METHYLASE); S-adenosylmethionine-dependent methyltransferase/ methyltransferase (TAIR:AT4G10760.1); Has 27106 Blast hits to 15582 proteins in 740 species: Archae - 31; Bacteria - 3753; Metazoa - 15359; Fungi - 2162; Plants - 1543; Viruses - 246; Other Eukaryotes - 4012 (source: NCBI BLink).  protein_id AT4G09980.2p  transcript_id AT4G09980.2  protein_id AT4G09980.2p  transcript_id AT4G09980.2  
At4g09980	chr4:006250006	0.0	C/6250006-6252030,6249519-6249602,6249314-6249418,6249116-6249224,6248511-6248662,6247978-6248394	AT4G09980.1  CDS  gene_syn EMB1691, EMBRYO DEFECTIVE 1691, T5L19.110, T5L19_110  gene EMB1691  go_function nucleic acid binding|GO:0003676||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757||ISS  product EMB1691 (EMBRYO DEFECTIVE 1691); S-adenosylmethionine-dependent methyltransferase/ methyltransferase/ nucleic acid binding  note EMBRYO DEFECTIVE 1691 (EMB1691); FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity, nucleic acid binding; INVOLVED IN: embryonic development ending in seed dormancy; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: N-6 adenine-specific DNA methylase, conserved site (InterPro:IPR002052), MT-A70 (InterPro:IPR007757); BEST Arabidopsis thaliana protein match is: MTA (MRNA ADENOSINE METHYLASE); S-adenosylmethionine-dependent methyltransferase/ methyltransferase (TAIR:AT4G10760.1); Has 27131 Blast hits to 15642 proteins in 745 species: Archae - 31; Bacteria - 3786; Metazoa - 15358; Fungi - 2157; Plants - 1538; Viruses - 242; Other Eukaryotes - 4019 (source: NCBI BLink).  protein_id AT4G09980.1p  transcript_id AT4G09980.1  protein_id AT4G09980.1p  transcript_id AT4G09980.1  
At4g09984	chr4:006255422	0.0	C/6255422-6255482,6254428-6254624	AT4G09984.1  CDS  gene_syn LCR34, Low-molecular-weight cysteine-rich 34  gene LCR34  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||IEA  product LCR34 (Low-molecular-weight cysteine-rich 34)  note Low-molecular-weight cysteine-rich 34 (LCR34); INVOLVED IN: defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851), Knottin (InterPro:IPR003614); Has 13 Blast hits to 13 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G09984.1p  transcript_id AT4G09984.1  protein_id AT4G09984.1p  transcript_id AT4G09984.1  
At4g09987	chr4:006257231	0.0	C/6257231-6258160	AT4G09987.1  pseudogenic_transcript  pseudo  function Encodes a defensin-like (DEFL) family protein.  
At4g09990	chr4:006259698	0.0	C/6259698-6260064,6259110-6259615	AT4G09990.1  CDS  gene_syn T5L19.120, T5L19_120  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579, plant (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G33800.1); Has 160 Blast hits to 160 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT4G09990.1p  transcript_id AT4G09990.1  protein_id AT4G09990.1p  transcript_id AT4G09990.1  
At4g10000	chr4:006262808	0.0	C/6262808-6263053,6262623-6262661,6262062-6262185,6261911-6261972,6261754-6261821,6261594-6261643,6261438-6261507,6261201-6261324,6260908-6261024,6260707-6260808	AT4G10000.1  CDS  gene_syn T5L19.130, T5L19_130  go_component chloroplast|GO:0009507|18431481|IDA  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  product electron carrier/ protein disulfide oxidoreductase  note electron carrier/ protein disulfide oxidoreductase; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: electron carrier (TAIR:AT5G03880.1); Has 393 Blast hits to 347 proteins in 129 species: Archae - 26; Bacteria - 229; Metazoa - 1; Fungi - 5; Plants - 60; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT4G10000.1p  transcript_id AT4G10000.1  protein_id AT4G10000.1p  transcript_id AT4G10000.1  
At4g10000	chr4:006262808	0.0	C/6262808-6263053,6262623-6262661,6262062-6262185,6261911-6261972,6261754-6261821,6261594-6261643,6261438-6261507,6261201-6261324,6260908-6261024,6260707-6260808	AT4G10000.2  CDS  gene_syn T5L19.130, T5L19_130  go_component chloroplast|GO:0009507|18431481|IDA  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  product electron carrier/ protein disulfide oxidoreductase  note electron carrier/ protein disulfide oxidoreductase; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336), Glutathione S-transferase, N-terminal (InterPro:IPR004045); BEST Arabidopsis thaliana protein match is: electron carrier (TAIR:AT5G03880.1); Has 393 Blast hits to 347 proteins in 129 species: Archae - 26; Bacteria - 229; Metazoa - 1; Fungi - 5; Plants - 60; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT4G10000.2p  transcript_id AT4G10000.2  protein_id AT4G10000.2p  transcript_id AT4G10000.2  
At4g10010	chr4:006265493	0.0	C/6265493-6265720,6265083-6265400,6264770-6264997,6264585-6264685,6264135-6264498,6263878-6264048	AT4G10010.1  CDS  gene_syn T5L19.140, T5L19_140  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G33770.1); Has 85368 Blast hits to 84573 proteins in 3049 species: Archae - 36; Bacteria - 7343; Metazoa - 37754; Fungi - 8036; Plants - 16009; Viruses - 407; Other Eukaryotes - 15783 (source: NCBI BLink).  protein_id AT4G10010.1p  transcript_id AT4G10010.1  protein_id AT4G10010.1p  transcript_id AT4G10010.1  
At4g10020	chr4:006268363	0.0	W/6268363-6268551,6268846-6269038,6269158-6269243,6269325-6269456,6269536-6269700,6269775-6270179	AT4G10020.1  CDS  gene_syn AtHSD5, T5L19.150, T5L19_150, hydroxysteroid dehydrogenase 5  gene AtHSD5  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product AtHSD5 (hydroxysteroid dehydrogenase 5); binding / catalytic/ oxidoreductase  note hydroxysteroid dehydrogenase 5 (AtHSD5); FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT5G50700.1); Has 49320 Blast hits to 49066 proteins in 1951 species: Archae - 385; Bacteria - 29159; Metazoa - 4113; Fungi - 2388; Plants - 1036; Viruses - 2; Other Eukaryotes - 12237 (source: NCBI BLink).  protein_id AT4G10020.1p  transcript_id AT4G10020.1  protein_id AT4G10020.1p  transcript_id AT4G10020.1  
At4g10030	chr4:006272985	0.0	C/6272985-6273098,6272762-6272896,6272649-6272675,6272403-6272493,6272049-6272092,6271876-6271974,6271729-6271786,6271585-6271637,6271407-6271508,6271157-6271222,6270916-6271028,6270656-6270827,6270490-6270558	AT4G10030.1  CDS  gene_syn T5L19.160, T5L19_160  go_component chloroplast|GO:0009507||IEA  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: ATP binding (TAIR:AT3G52570.1); Has 2503 Blast hits to 2503 proteins in 715 species: Archae - 12; Bacteria - 1634; Metazoa - 223; Fungi - 98; Plants - 42; Viruses - 3; Other Eukaryotes - 491 (source: NCBI BLink).  protein_id AT4G10030.1p  transcript_id AT4G10030.1  protein_id AT4G10030.1p  transcript_id AT4G10030.1  
At4g10040	chr4:006277083	0.0	W/6277083-6277194,6277384-6277517,6278189-6278281	AT4G10040.1  CDS  gene_syn CYTC-2, F28M11.5, cytochrome c-2  gene CYTC-2  function Encodes cytochrome c. Promoter directs preferential expression in vascular tissues of cotyledons, leaves, roots, and hypocotyls, and in anthers.  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component cellular_component|GO:0005575||ND  go_function electron carrier activity|GO:0009055||ISS  product CYTC-2 (cytochrome c-2); electron carrier/ heme binding / iron ion binding  note cytochrome c-2 (CYTC-2); FUNCTIONS IN: electron carrier activity, iron ion binding, heme binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c, class IA/ IB (InterPro:IPR002327), Cytochrome c, class I (InterPro:IPR003088), Cytochrome c, monohaem (InterPro:IPR009056); BEST Arabidopsis thaliana protein match is: CYTC-1 (CYTOCHROME C-1); electron carrier/ heme binding / iron ion binding (TAIR:AT1G22840.1); Has 3366 Blast hits to 3344 proteins in 553 species: Archae - 0; Bacteria - 1036; Metazoa - 542; Fungi - 196; Plants - 114; Viruses - 0; Other Eukaryotes - 1478 (source: NCBI BLink).  protein_id AT4G10040.1p  transcript_id AT4G10040.1  protein_id AT4G10040.1p  transcript_id AT4G10040.1  
At4g10050	chr4:006287071	0.0	C/6287071-6287186,6286912-6286996,6286759-6286829,6286542-6286656,6286360-6286439,6285914-6285998,6285757-6285837,6285423-6285517,6285290-6285340,6285065-6285145,6284895-6284967,6284747-6284824,6284620-6284661	AT4G10050.1  CDS  gene_syn F28M11.4  go_component vacuole|GO:0005773|14760709|IDA  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073), Protein phosphatase methylesterase, eukaryotic (InterPro:IPR016812); Has 5040 Blast hits to 5015 proteins in 887 species: Archae - 30; Bacteria - 3229; Metazoa - 308; Fungi - 169; Plants - 67; Viruses - 7; Other Eukaryotes - 1230 (source: NCBI BLink).  protein_id AT4G10050.1p  transcript_id AT4G10050.1  protein_id AT4G10050.1p  transcript_id AT4G10050.1  
At4g10060	chr4:006289355	0.0	W/6289355-6289399,6291058-6291162,6291266-6291322,6291398-6291468,6291567-6291666,6291742-6291812,6291874-6291977,6292075-6292175,6292274-6292327,6292412-6292467,6292562-6292600,6292736-6292883,6292971-6293146,6293224-6293291,6293384-6293456,6293522-6293583,6293660-6294509,6294593-6294883,6294961-6295258	AT4G10060.1  CDS  gene_syn F28M11.3  go_component vacuole|GO:0005773|15539469|IDA  go_process sphingolipid metabolic process|GO:0006665||IEA  go_process glucosylceramide catabolic process|GO:0006680||IEA  go_function catalytic activity|GO:0003824||IEA  go_function glucosylceramidase activity|GO:0004348||IEA  product catalytic/ glucosylceramidase  note catalytic/ glucosylceramidase; FUNCTIONS IN: catalytic activity, glucosylceramidase activity; INVOLVED IN: glucosylceramide catabolic process, sphingolipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glucosylceramidase (InterPro:IPR006775), Six-hairpin glycosidase-like (InterPro:IPR008928), Beta-glucosidase, GBA2 type (InterPro:IPR014551); BEST Arabidopsis thaliana protein match is: catalytic/ glucosylceramidase (TAIR:AT1G33700.2); Has 523 Blast hits to 473 proteins in 113 species: Archae - 20; Bacteria - 144; Metazoa - 142; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT4G10060.1p  transcript_id AT4G10060.1  protein_id AT4G10060.1p  transcript_id AT4G10060.1  
At4g10070	chr4:006299594	0.0	C/6299594-6299759,6299059-6299450,6298782-6298967,6298594-6298695,6298458-6298529,6298227-6298340,6295859-6296828,6295608-6295783	AT4G10070.1  CDS  gene_syn F28M11.1  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product KH domain-containing protein  note KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA binding / nucleic acid binding (TAIR:AT1G33680.1); Has 33030 Blast hits to 19075 proteins in 830 species: Archae - 38; Bacteria - 2356; Metazoa - 17769; Fungi - 5583; Plants - 2543; Viruses - 305; Other Eukaryotes - 4436 (source: NCBI BLink).  protein_id AT4G10070.1p  transcript_id AT4G10070.1  protein_id AT4G10070.1p  transcript_id AT4G10070.1  
At4g10080	chr4:006301709	0.0	C/6301709-6302560,6300454-6300579	AT4G10080.1  CDS  gene_syn F28M11.2  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13530.1); Has 73 Blast hits to 67 proteins in 15 species: Archae - 2; Bacteria - 1; Metazoa - 0; Fungi - 12; Plants - 54; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G10080.1p  transcript_id AT4G10080.1  protein_id AT4G10080.1p  transcript_id AT4G10080.1  
At4g10090	chr4:006305455	0.0	W/6305455-6305688,6305770-6305842,6306616-6306824,6306916-6307062,6307161-6307286	AT4G10090.1  CDS  gene_syn F28M11.10, F28M11_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2348 (InterPro:IPR018627); Has 89 Blast hits to 89 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 67; Fungi - 2; Plants - 16; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G10090.1p  transcript_id AT4G10090.1  protein_id AT4G10090.1p  transcript_id AT4G10090.1  
At4g10100	chr4:006309091	0.0	W/6309091-6309381	AT4G10100.1  CDS  gene_syn CNX7, F28M11.20, F28M11_20, MOLYBDOPTERIN SYNTHASE, SIR5  gene CNX7  function molybdenum cofactor synthesis family protein, similar to Molybdenum cofactor synthesis protein 2 small subunit (Molybdopterin- synthase small subunit) (MOCS2A) (MOCO1-A) (Swiss-Prot:O96033) (Homo sapiens); contains TIGRFAM TIGR01682: molybdopterin converting factor, subunit 1; sir loss-of-function mutants are resistant to sirtinol, a modulator of auxin signaling.  go_component cellular_component|GO:0005575||ND  go_process Mo-molybdopterin cofactor biosynthetic process|GO:0006777||ISS  go_process sulfur metabolic process|GO:0006790||ISS  go_process auxin mediated signaling pathway|GO:0009734|15710899|IMP  go_process molybdenum incorporation into molybdenum-molybdopterin complex|GO:0018315|11553608|IDA  go_function catalytic activity|GO:0003824||ISS  product CNX7; catalytic  note CNX7; FUNCTIONS IN: catalytic activity; INVOLVED IN: auxin mediated signaling pathway, molybdenum incorporation into molybdenum-molybdopterin complex, sulfur metabolic process, Mo-molybdopterin cofactor biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ThiamineS (InterPro:IPR003749), Molybdopterin converting factor, subunit 1 (InterPro:IPR010034), Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp (InterPro:IPR016155), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); Has 509 Blast hits to 509 proteins in 184 species: Archae - 14; Bacteria - 380; Metazoa - 33; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT4G10100.1p  transcript_id AT4G10100.1  protein_id AT4G10100.1p  transcript_id AT4G10100.1  
At4g10100	chr4:006309091	0.0	W/6309091-6309381	AT4G10100.2  CDS  gene_syn CNX7, F28M11.20, F28M11_20, MOLYBDOPTERIN SYNTHASE, SIR5  gene CNX7  function molybdenum cofactor synthesis family protein, similar to Molybdenum cofactor synthesis protein 2 small subunit (Molybdopterin- synthase small subunit) (MOCS2A) (MOCO1-A) (Swiss-Prot:O96033) (Homo sapiens); contains TIGRFAM TIGR01682: molybdopterin converting factor, subunit 1; sir loss-of-function mutants are resistant to sirtinol, a modulator of auxin signaling.  go_component cellular_component|GO:0005575||ND  go_process Mo-molybdopterin cofactor biosynthetic process|GO:0006777||ISS  go_process sulfur metabolic process|GO:0006790||ISS  go_process auxin mediated signaling pathway|GO:0009734|15710899|IMP  go_process molybdenum incorporation into molybdenum-molybdopterin complex|GO:0018315|11553608|IDA  go_function catalytic activity|GO:0003824||ISS  product CNX7; catalytic  note CNX7; FUNCTIONS IN: catalytic activity; INVOLVED IN: auxin mediated signaling pathway, molybdenum incorporation into molybdenum-molybdopterin complex, sulfur metabolic process, Mo-molybdopterin cofactor biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ThiamineS (InterPro:IPR003749), Molybdopterin converting factor, subunit 1 (InterPro:IPR010034), Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp (InterPro:IPR016155), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); Has 509 Blast hits to 509 proteins in 184 species: Archae - 14; Bacteria - 380; Metazoa - 33; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT4G10100.2p  transcript_id AT4G10100.2  protein_id AT4G10100.2p  transcript_id AT4G10100.2  
At4g10100	chr4:006309091	0.0	W/6309091-6309381	AT4G10100.3  CDS  gene_syn CNX7, F28M11.20, F28M11_20, MOLYBDOPTERIN SYNTHASE, SIR5  gene CNX7  function molybdenum cofactor synthesis family protein, similar to Molybdenum cofactor synthesis protein 2 small subunit (Molybdopterin- synthase small subunit) (MOCS2A) (MOCO1-A) (Swiss-Prot:O96033) (Homo sapiens); contains TIGRFAM TIGR01682: molybdopterin converting factor, subunit 1; sir loss-of-function mutants are resistant to sirtinol, a modulator of auxin signaling.  go_component cellular_component|GO:0005575||ND  go_process Mo-molybdopterin cofactor biosynthetic process|GO:0006777||ISS  go_process sulfur metabolic process|GO:0006790||ISS  go_process auxin mediated signaling pathway|GO:0009734|15710899|IMP  go_process molybdenum incorporation into molybdenum-molybdopterin complex|GO:0018315|11553608|IDA  go_function catalytic activity|GO:0003824||ISS  product CNX7; catalytic  note CNX7; FUNCTIONS IN: catalytic activity; INVOLVED IN: auxin mediated signaling pathway, molybdenum incorporation into molybdenum-molybdopterin complex, sulfur metabolic process, Mo-molybdopterin cofactor biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ThiamineS (InterPro:IPR003749), Molybdopterin converting factor, subunit 1 (InterPro:IPR010034), Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp (InterPro:IPR016155), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); Has 509 Blast hits to 509 proteins in 184 species: Archae - 14; Bacteria - 380; Metazoa - 33; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT4G10100.3p  transcript_id AT4G10100.3  protein_id AT4G10100.3p  transcript_id AT4G10100.3  
At4g10110	chr4:006310776	0.0	C/6310776-6310809,6310486-6310697,6310227-6310395,6309606-6309712	AT4G10110.1  CDS  gene_syn F28M11.30, F28M11_30  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: emb2444 (embryo defective 2444); RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT2G18510.1); Has 2597 Blast hits to 2346 proteins in 266 species: Archae - 0; Bacteria - 266; Metazoa - 1244; Fungi - 384; Plants - 381; Viruses - 0; Other Eukaryotes - 322 (source: NCBI BLink).  protein_id AT4G10110.1p  transcript_id AT4G10110.1  protein_id AT4G10110.1p  transcript_id AT4G10110.1  
At4g10112	chr4:006311477	0.0	C/6311477-6311581	AT4G10112.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G10112.1p  transcript_id AT4G10112.1  protein_id AT4G10112.1p  transcript_id AT4G10112.1  
At4g10115	chr4:006312491	0.0	C/6312491-6312557,6312104-6312327	AT4G10115.1  CDS  gene_syn SCR-Like 20, SCRL20  gene SCRL20  function Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165||IEA  product SCRL20 (SCR-Like 20)  note SCR-Like 20 (SCRL20); INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility response (InterPro:IPR010682); BEST Arabidopsis thaliana protein match is: SCRL21 (SCR-Like 21) (TAIR:AT4G10767.1); Has 21 Blast hits to 21 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G10115.1p  transcript_id AT4G10115.1  protein_id AT4G10115.1p  transcript_id AT4G10115.1  
At4g10120	chr4:006315033	0.0	W/6315033-6315290,6315418-6315507,6315637-6315890,6315990-6316053,6316176-6316375,6316472-6316952,6317122-6317253,6317369-6317500,6317616-6317792,6318053-6318106,6318197-6318259,6318358-6319200,6319281-6319408,6319509-6319785	AT4G10120.1  CDS  gene_syn ATSPS4F, F28M11.40, F28M11_40  gene ATSPS4F  function Encodes a protein with putative sucrose-phosphate synthase activity.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process sucrose metabolic process|GO:0005985||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function sucrose-phosphate synthase activity|GO:0046524|16876912|RCA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product ATSPS4F; sucrose-phosphate synthase/ transferase, transferring glycosyl groups  note ATSPS4F; FUNCTIONS IN: sucrose-phosphate synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process, sucrose metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Sucrose-6F-phosphate phosphohydrolase, plant and cyanobacteria (InterPro:IPR006380), Sucrose phosphate synthase, plant (InterPro:IPR012819), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: ATSPS3F (sucrose phosphate synthase 3F); sucrose-phosphate synthase/ transferase, transferring glycosyl groups (TAIR:AT1G04920.1); Has 8452 Blast hits to 8369 proteins in 1079 species: Archae - 306; Bacteria - 4768; Metazoa - 26; Fungi - 80; Plants - 489; Viruses - 0; Other Eukaryotes - 2783 (source: NCBI BLink).  protein_id AT4G10120.1p  transcript_id AT4G10120.1  protein_id AT4G10120.1p  transcript_id AT4G10120.1  
At4g10120	chr4:006315033	0.0	W/6315033-6315290,6315418-6315507,6315637-6315890,6315990-6316053,6316176-6316375,6316472-6316952,6317122-6317253,6317369-6317500,6317616-6317792,6318053-6318106,6318197-6318259,6318358-6319200,6319281-6319408,6319509-6319785	AT4G10120.2  CDS  gene_syn ATSPS4F, F28M11.40, F28M11_40  gene ATSPS4F  function Encodes a protein with putative sucrose-phosphate synthase activity.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process sucrose metabolic process|GO:0005985||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product ATSPS4F; transferase, transferring glycosyl groups  note ATSPS4F; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process, sucrose metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Sucrose-6F-phosphate phosphohydrolase, plant and cyanobacteria (InterPro:IPR006380), Sucrose phosphate synthase, plant (InterPro:IPR012819), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: ATSPS3F (sucrose phosphate synthase 3F); sucrose-phosphate synthase/ transferase, transferring glycosyl groups (TAIR:AT1G04920.1); Has 8452 Blast hits to 8369 proteins in 1079 species: Archae - 306; Bacteria - 4768; Metazoa - 26; Fungi - 80; Plants - 489; Viruses - 0; Other Eukaryotes - 2783 (source: NCBI BLink).  protein_id AT4G10120.2p  transcript_id AT4G10120.2  protein_id AT4G10120.2p  transcript_id AT4G10120.2  
At4g10130	chr4:006320959	0.0	C/6320959-6321483	AT4G10130.1  CDS  gene_syn F28M11.50, F28M11_50  go_function heat shock protein binding|GO:0031072||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Zinc finger, DPH-type (InterPro:IPR007872); BEST Arabidopsis thaliana protein match is: ATJ3; protein binding (TAIR:AT3G44110.2); Has 13020 Blast hits to 13020 proteins in 1752 species: Archae - 100; Bacteria - 4214; Metazoa - 2854; Fungi - 1225; Plants - 913; Viruses - 8; Other Eukaryotes - 3706 (source: NCBI BLink).  protein_id AT4G10130.1p  transcript_id AT4G10130.1  protein_id AT4G10130.1p  transcript_id AT4G10130.1  
At4g10140	chr4:006322538	0.0	W/6322538-6322614,6323580-6323650,6323759-6323864,6323982-6324114,6324257-6324421	AT4G10140.1  CDS  gene_syn F28M11.60, F28M11_60  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G33490.1); Has 39 Blast hits to 39 proteins in 13 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G10140.1p  transcript_id AT4G10140.1  protein_id AT4G10140.1p  transcript_id AT4G10140.1  
At4g10150	chr4:006328136	0.0	W/6328136-6328381,6328483-6328565,6329177-6329558	AT4G10150.1  CDS  gene_syn T9A4.19  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G10160.1); Has 6341 Blast hits to 6324 proteins in 225 species: Archae - 0; Bacteria - 6; Metazoa - 2036; Fungi - 518; Plants - 2672; Viruses - 45; Other Eukaryotes - 1064 (source: NCBI BLink).  protein_id AT4G10150.1p  transcript_id AT4G10150.1  protein_id AT4G10150.1p  transcript_id AT4G10150.1  
At4g10160	chr4:006336023	0.0	W/6336023-6336226,6336320-6336402,6336911-6337301	AT4G10160.1  CDS  gene_syn T9A4.20  go_function ubiquitin-protein ligase activity|GO:0004842|15644464|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G10150.1); Has 6284 Blast hits to 6268 proteins in 225 species: Archae - 0; Bacteria - 6; Metazoa - 1994; Fungi - 499; Plants - 2674; Viruses - 48; Other Eukaryotes - 1063 (source: NCBI BLink).  protein_id AT4G10160.1p  transcript_id AT4G10160.1  protein_id AT4G10160.1p  transcript_id AT4G10160.1  
At4g10170	chr4:006344587	0.0	W/6344587-6345351	AT4G10170.1  CDS  gene_syn T9A4.21  go_component plasma membrane|GO:0005886|17317660|IDA  go_process transport|GO:0006810||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function molecular_function|GO:0003674||ND  product synaptobrevin-related family protein  note synaptobrevin-related family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G33475.1); Has 166 Blast hits to 166 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 166; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G10170.1p  transcript_id AT4G10170.1  protein_id AT4G10170.1p  transcript_id AT4G10170.1  
At4g10170	chr4:006344587	0.0	W/6344587-6345351	AT4G10170.2  CDS  gene_syn T9A4.21  go_component plasma membrane|GO:0005886|17317660|IDA  go_process transport|GO:0006810||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function molecular_function|GO:0003674||ND  product synaptobrevin-related family protein  note synaptobrevin-related family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G33475.1); Has 166 Blast hits to 166 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 166; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G10170.2p  transcript_id AT4G10170.2  protein_id AT4G10170.2p  transcript_id AT4G10170.2  
At4g10180	chr4:006346543	0.0	W/6346543-6346614,6346696-6347358,6347433-6347624,6347923-6347991,6348087-6348143,6348250-6348330,6348413-6348574,6348647-6348742,6348815-6348914,6349007-6349146	AT4G10180.1  CDS  gene_syn DE-ETIOLATED 1, DET1, FUS2, FUSCA 2, T9A4.17  gene DET1  function Encodes a nuclear-localized protein that acts as a repressor of photomorphogenesis and may be involved in chromatin remodeling.  go_function catalytic activity|GO:0003824||IEA  go_component nucleus|GO:0005634|8033202|IDA  go_process DNA repair|GO:0006281|18434413|IMP  go_process negative regulation of photomorphogenesis|GO:0010100||IMP  product DET1 (DE-ETIOLATED 1); catalytic  note DE-ETIOLATED 1 (DET1); FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, negative regulation of photomorphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase-like (InterPro:IPR008928); Has 209 Blast hits to 205 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 89; Fungi - 0; Plants - 110; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT4G10180.1p  transcript_id AT4G10180.1  protein_id AT4G10180.1p  transcript_id AT4G10180.1  
At4g10190	chr4:006350928	0.0	W/6350928-6352031	AT4G10190.1  CDS  gene_syn T9A4.12  product unknown protein  note CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G21130.1); Has 950 Blast hits to 926 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 948; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G10190.1p  transcript_id AT4G10190.1  protein_id AT4G10190.1p  transcript_id AT4G10190.1  
At4g10200	chr4:006353172	0.0	W/6353172-6353975,6354044-6354494,6354598-6355028,6355076-6355591	AT4G10200.1  CDS  gene_syn T9A4.11  go_function protein dimerization activity|GO:0046983||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product hAT dimerisation domain-containing protein / transposase-related  note hAT dimerisation domain-containing protein / transposase-related; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, TTF-type (InterPro:IPR006580); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G29638.1); Has 407 Blast hits to 360 proteins in 33 species: Archae - 0; Bacteria - 2; Metazoa - 258; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G10200.1p  transcript_id AT4G10200.1  protein_id AT4G10200.1p  transcript_id AT4G10200.1  
At4g10201	chr4:006355739	0.0	W/6355739-6368550	AT4G10201.1  pseudogenic_transcript  pseudo  function Pseudogene of AT3G21130; F-box family protein-related  
At4g10210	chr4:006357218	0.0	W/6357218-6357409,6357611-6357703,6358196-6358429,6358936-6359091,6359183-6359236,6359343-6359465,6359927-6360256	AT4G10210.1  CDS  gene_syn F24G24.10, F24G24_10  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10220.1); Has 345 Blast hits to 328 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 341; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G10210.1p  transcript_id AT4G10210.1  protein_id AT4G10210.1p  transcript_id AT4G10210.1  
At4g10220	chr4:006362189	0.0	W/6362189-6362380,6362541-6362633,6363123-6363353,6363840-6363992,6364100-6364153,6364268-6364390,6364723-6365079	AT4G10220.1  CDS  gene_syn T9A4.9  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10210.1); Has 385 Blast hits to 363 proteins in 15 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 8; Plants - 373; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G10220.1p  transcript_id AT4G10220.1  protein_id AT4G10220.1p  transcript_id AT4G10220.1  
At4g10230	chr4:006366261	0.0	W/6366261-6366353,6366457-6367185	AT4G10230.1  CDS  gene_syn T9A4.8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24380.1); Has 114 Blast hits to 114 proteins in 22 species: Archae - 0; Bacteria - 6; Metazoa - 12; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT4G10230.1p  transcript_id AT4G10230.1  protein_id AT4G10230.1p  transcript_id AT4G10230.1  
At4g10240	chr4:006369326	0.0	C/6369326-6369526,6368967-6369254	AT4G10240.1  CDS  gene_syn T9A4.2  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (B-box type) family protein  note zinc finger (B-box type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: leaf whorl, petal, carpel; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: LZF1 (LIGHT-REGULATED ZINC FINGER PROTEIN 1); transcription factor/ zinc ion binding (TAIR:AT1G78600.1); Has 1122 Blast hits to 869 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 0; Plants - 1052; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT4G10240.1p  transcript_id AT4G10240.1  protein_id AT4G10240.1p  transcript_id AT4G10240.1  
At4g10250	chr4:006370537	0.0	W/6370537-6371124	AT4G10250.1  CDS  gene_syn ATHSP22.0, T9A4.7  gene ATHSP22.0  function Columbia endomembrane-localized small heat shock protein  go_component endomembrane system|GO:0012505||IEA  go_process response to heat|GO:0009408||ISS  go_function molecular_function|GO:0003674||ND  product ATHSP22.0  note ATHSP22.0; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to heat; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: 17.8 kDa class I heat shock protein (HSP17.8-CI) (TAIR:AT1G07400.1); Has 4827 Blast hits to 4827 proteins in 1043 species: Archae - 119; Bacteria - 2573; Metazoa - 64; Fungi - 191; Plants - 977; Viruses - 2; Other Eukaryotes - 901 (source: NCBI BLink).  protein_id AT4G10250.1p  transcript_id AT4G10250.1  protein_id AT4G10250.1p  transcript_id AT4G10250.1  
At4g10260	chr4:006372594	0.0	C/6372594-6372770,6372109-6372519,6371900-6372034,6371705-6371821,6371486-6371620	AT4G10260.1  CDS  gene_syn T9A4.3  go_process sucrose biosynthetic process|GO:0005986||IEA  go_process D-ribose metabolic process|GO:0006014||IEA  go_process sucrose catabolic process, using beta-fructofuranosidase|GO:0019575||IEA  go_process acetate fermentation|GO:0019654||IEA  go_function ribokinase activity|GO:0004747||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product pfkB-type carbohydrate kinase family protein  note pfkB-type carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process, acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, sepal, male gametophyte, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-type carbohydrate kinase family protein (TAIR:AT3G59480.1); Has 12102 Blast hits to 12100 proteins in 1321 species: Archae - 229; Bacteria - 7583; Metazoa - 116; Fungi - 97; Plants - 271; Viruses - 0; Other Eukaryotes - 3806 (source: NCBI BLink).  protein_id AT4G10260.1p  transcript_id AT4G10260.1  protein_id AT4G10260.1p  transcript_id AT4G10260.1  
At4g10265	chr4:006373226	0.0	C/6373226-6373477	AT4G10265.1  CDS  go_component cellular_component|GO:0005575||ND  go_process response to wounding|GO:0009611||ISS  go_function molecular_function|GO:0003674||ND  product wound-responsive protein, putative  note wound-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to wounding; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: wound-responsive family protein (TAIR:AT4G10270.1); Has 96 Blast hits to 95 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G10265.1p  transcript_id AT4G10265.1  protein_id AT4G10265.1p  transcript_id AT4G10265.1  
At4g10270	chr4:006374805	0.0	W/6374805-6375077	AT4G10270.1  CDS  gene_syn T9A4.6  go_process response to wounding|GO:0009611||ISS  go_function molecular_function|GO:0003674||ND  product wound-responsive family protein  note wound-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to wounding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: wound-responsive protein, putative (TAIR:AT4G10265.1); Has 110 Blast hits to 109 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 110; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G10270.1p  transcript_id AT4G10270.1  protein_id AT4G10270.1p  transcript_id AT4G10270.1  
At4g10280	chr4:006375791	0.0	C/6375791-6375996,6375220-6375436	AT4G10280.1  CDS  gene_syn T9A4.15  go_component endomembrane system|GO:0012505||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Protein of unknown function DUF861, cupin-3 (InterPro:IPR008579), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10290.1); Has 293 Blast hits to 293 proteins in 74 species: Archae - 0; Bacteria - 124; Metazoa - 0; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT4G10280.1p  transcript_id AT4G10280.1  protein_id AT4G10280.1p  transcript_id AT4G10280.1  
At4g10290	chr4:006381599	0.0	C/6381599-6381720,6379958-6380198	AT4G10290.1  CDS  gene_syn T9A4.13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Protein of unknown function DUF861, cupin-3 (InterPro:IPR008579), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10280.1); Has 242 Blast hits to 242 proteins in 52 species: Archae - 0; Bacteria - 84; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT4G10290.1p  transcript_id AT4G10290.1  protein_id AT4G10290.1p  transcript_id AT4G10290.1  
At4g10300	chr4:006384564	0.0	W/6384564-6384763,6385742-6385946	AT4G10300.1  CDS  gene_syn T9A4.16  go_component chloroplast|GO:0009507|18431481|IDA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Protein of unknown function DUF861, cupin-3 (InterPro:IPR008579), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04300.1); Has 356 Blast hits to 356 proteins in 93 species: Archae - 0; Bacteria - 181; Metazoa - 0; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT4G10300.1p  transcript_id AT4G10300.1  protein_id AT4G10300.1p  transcript_id AT4G10300.1  
At4g10310	chr4:006392008	0.0	W/6392008-6393080,6394356-6394589,6395454-6395667	AT4G10310.1  CDS  gene_syn ATHKT1, HIGH-AFFINITY K+ TRANSPORTER 1, HKT1, T9A4.5  gene HKT1  function encodes a sodium transporter (HKT1) expressed in xylem parenchyma cells. Mutants over-accumulate sodium in shoot tissue and have increased sodium in the xylem sap and reduced sodium in phloem sap and roots.  go_component plasma membrane|GO:0005886|16359386|IDA  go_process potassium ion transport|GO:0006813|16359386|IMP  go_process sodium ion transport|GO:0006814|10759522|IDA  go_process sodium ion transport|GO:0006814|16359386|IMP  go_process response to osmotic stress|GO:0006970|16359386|IEP  go_process response to salt stress|GO:0009651|11698666|IGI  go_process response to salt stress|GO:0009651|12727868|IMP  go_function sodium ion transmembrane transporter activity|GO:0015081|10759522|IDA  go_function sodium ion transmembrane transporter activity|GO:0015081||ISS  product HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1); sodium ion transmembrane transporter  note HIGH-AFFINITY K+ TRANSPORTER 1 (HKT1); FUNCTIONS IN: sodium ion transmembrane transporter activity; INVOLVED IN: response to salt stress, potassium ion transport, sodium ion transport, response to osmotic stress; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Potassium transport protein, high-affinity (InterPro:IPR004773), Cation transporter (InterPro:IPR003445); Has 1440 Blast hits to 1416 proteins in 474 species: Archae - 0; Bacteria - 914; Metazoa - 1; Fungi - 220; Plants - 179; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink).  protein_id AT4G10310.1p  transcript_id AT4G10310.1  protein_id AT4G10310.1p  transcript_id AT4G10310.1  
At4g10320	chr4:006403976	0.0	C/6403976-6404509,6403821-6403886,6403211-6403732,6402926-6403039,6402684-6402781,6402249-6402327,6401991-6402149,6401633-6401722,6401421-6401554,6400747-6400906,6400540-6400623,6400232-6400441,6399997-6400122,6399773-6399910,6399578-6399681,6399423-6399486,6399188-6399276,6398940-6399081,6398783-6398846,6398640-6398707,6398349-6398471,6398098-6398163,6397873-6398014,6397699-6397790,6397526-6397630	AT4G10320.1  CDS  gene_syn F24G24.120, F24G24_120  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function isoleucine-tRNA ligase activity|GO:0004822||IEA  go_function ATP binding|GO:0005524||IEA  go_component cytosol|GO:0005829|16297076|ISS  go_process tRNA aminoacylation for protein translation|GO:0006418||ISS  go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS  go_function ATP binding|GO:0005524||ISS  product isoleucyl-tRNA synthetase, putative / isoleucine--tRNA ligase, putative  note isoleucyl-tRNA synthetase, putative / isoleucine--tRNA ligase, putative; FUNCTIONS IN: isoleucine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: response to cadmium ion, tRNA aminoacylation for protein translation; LOCATED IN: cytosol; EXPRESSED IN: male gametophyte, guard cell, epidermis, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Isoleucyl-tRNA synthetase (InterPro:IPR018353), Isoleucyl-tRNA synthetase, class Ia (InterPro:IPR002301), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Isoleucyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR015905), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300); BEST Arabidopsis thaliana protein match is: OVA2 (ovule abortion 2); ATP binding / aminoacyl-tRNA ligase/ catalytic/ isoleucine-tRNA ligase/ nucleotide binding (TAIR:AT5G49030.1); Has 27648 Blast hits to 24183 proteins in 1801 species: Archae - 699; Bacteria - 11987; Metazoa - 692; Fungi - 480; Plants - 135; Viruses - 0; Other Eukaryotes - 13655 (source: NCBI BLink).  protein_id AT4G10320.1p  transcript_id AT4G10320.1  protein_id AT4G10320.1p  transcript_id AT4G10320.1  
At4g10330	chr4:006406551	0.0	W/6406551-6406698,6406806-6406956,6407043-6407136	AT4G10330.1  CDS  gene_syn F24G24.130, F24G24_130  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 4017 Blast hits to 987 proteins in 153 species: Archae - 18; Bacteria - 164; Metazoa - 2052; Fungi - 67; Plants - 1382; Viruses - 57; Other Eukaryotes - 277 (source: NCBI BLink).  protein_id AT4G10330.1p  transcript_id AT4G10330.1  protein_id AT4G10330.1p  transcript_id AT4G10330.1  
At4g10340	chr4:006408200	0.0	W/6408200-6408389,6408473-6408557,6408647-6408697,6408796-6408916,6409023-6409157,6409236-6409496	AT4G10340.1  CDS  gene_syn CHLOROPHYLL PROTEIN 26, CP 26, CP26, F24G24.140, F24G24_140, LHCB5, LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5  gene LHCB5  function photosystem II encoding the light-harvesting chlorophyll a/b binding protein CP26 of the antenna system of the photosynthetic apparatus  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component PSII associated light-harvesting complex II|GO:0009517|9003179|IDA  go_component chloroplast stromal thylakoid|GO:0009533||IDA  go_component photosystem II antenna complex|GO:0009783|11340191|IMP  go_component plastoglobule|GO:0010287|16414959|IDA  go_component plastoglobule|GO:0010287|16461379|IDA  go_component light-harvesting complex|GO:0030076||ISS  go_process response to blue light|GO:0009637|18820083|IEP  go_process response to red light|GO:0010114|18820083|IEP  go_process nonphotochemical quenching|GO:0010196|18381925|IMP  go_process response to far red light|GO:0010218|18820083|IEP  go_process photosynthesis|GO:0015979|18381925|IMP  go_process photosynthesis|GO:0015979||ISS  go_function chlorophyll binding|GO:0016168||ISS  product LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5); chlorophyll binding  note LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5 (LHCB5); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light, photosynthesis, nonphotochemical quenching; LOCATED IN: in 9 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: LHCB2.1; chlorophyll binding (TAIR:AT2G05100.1); Has 1791 Blast hits to 1727 proteins in 200 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1540; Viruses - 0; Other Eukaryotes - 249 (source: NCBI BLink).  protein_id AT4G10340.1p  transcript_id AT4G10340.1  protein_id AT4G10340.1p  transcript_id AT4G10340.1  
At4g10345	chr4:006413010	0.0	W/6413010-6413342	AT4G10345.1  miRNA  gene_syn MICRORNA832A, MIR832A  gene MIR832A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UGCUGGGAUCGGGAAUCGAAA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR832A (MICRORNA832A); miRNA  transcript_id AT4G10345.1  
At4g10350	chr4:006416664	0.0	C/6416664-6416829,6416180-6416457,6415287-6415868	AT4G10350.1  CDS  gene_syn ANAC070, Arabidopsis NAC domain containing protein 70, F24G24.150, F24G24_150  gene ANAC070  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ANAC070 (Arabidopsis NAC domain containing protein 70); transcription factor  note Arabidopsis NAC domain containing protein 70 (ANAC070); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC015 (Arabidopsis NAC domain containing protein 15); transcription factor (TAIR:AT1G33280.1); Has 1605 Blast hits to 1603 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1605; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G10350.1p  transcript_id AT4G10350.1  protein_id AT4G10350.1p  transcript_id AT4G10350.1  
At4g10360	chr4:006420679	0.0	W/6420679-6420768,6420846-6420934,6421028-6421166,6421246-6421320,6421439-6421560,6421643-6421718,6421800-6421859,6421959-6422108	AT4G10360.1  CDS  gene_syn F24G24.160, F24G24_160  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31300.2); Has 453 Blast hits to 451 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 225; Fungi - 97; Plants - 91; Viruses - 3; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT4G10360.1p  transcript_id AT4G10360.1  protein_id AT4G10360.1p  transcript_id AT4G10360.1  
At4g10360	chr4:006420679	0.0	W/6420679-6420768,6420846-6420934,6421028-6421166,6421246-6421320,6421439-6421560,6421643-6421718,6421800-6421859,6421959-6422108	AT4G10360.2  CDS  gene_syn F24G24.160, F24G24_160  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31300.2); Has 453 Blast hits to 451 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 225; Fungi - 97; Plants - 91; Viruses - 3; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT4G10360.2p  transcript_id AT4G10360.2  protein_id AT4G10360.2p  transcript_id AT4G10360.2  
At4g10370	chr4:006423577	0.0	C/6423577-6425640	AT4G10370.1  CDS  gene_syn F24G24.170, F24G24_170  go_process intracellular signaling cascade|GO:0007242||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular signaling cascade; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT3G26550.1); Has 1166 Blast hits to 489 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 1148; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT4G10370.1p  transcript_id AT4G10370.1  protein_id AT4G10370.1p  transcript_id AT4G10370.1  
At4g10380	chr4:006434274	0.0	C/6434274-6434510,6432129-6432548,6431803-6431864,6431530-6431725	AT4G10380.1  CDS  gene_syn F7L13.6, NIP5;1, NLM6, NLM8, NOD26-LIKE MIP 6, NOD26-LIKE MIP 8  gene NIP5;1  function Essential for efficient Boron uptake and plant development under boron limitation. Also functions in arsenite transport and tolerance.  go_component plasma membrane|GO:0005886|16679457|IDA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_process response to boron|GO:0010036|16679457|IEP  go_process response to boron|GO:0010036|16679457|IMP  go_process arsenite transport|GO:0015700|19029297|IDA  go_process response to arsenic|GO:0046685|19029297|IMP  go_process boron transport|GO:0046713|16679457|IDA  go_process boron transport|GO:0046713|16679457|IMP  go_process cellular response to boron levels|GO:0080029|18952773|IEP  go_function arsenite transmembrane transporter activity|GO:0015105|19029297|IDA  go_function water channel activity|GO:0015250|16679457|IDA  go_function water channel activity|GO:0015250||ISS  go_function boron transporter activity|GO:0046715|16679457|IDA  go_function boron uptake transmembrane transporter activity|GO:0080138|16679457|IDA  product NIP5;1; arsenite transmembrane transporter/ boron transporter/ water channel  note NIP5;1; FUNCTIONS IN: boron transporter activity, water channel activity, boron uptake transmembrane transporter activity, arsenite transmembrane transporter activity; INVOLVED IN: in 6 processes; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: NIP6;1 (NOD26-LIKE INTRINSIC PROTEIN 6;1); boron transporter/ glycerol transmembrane transporter/ urea transmembrane transporter/ water channel/ water transporter (TAIR:AT1G80760.1); Has 6630 Blast hits to 6556 proteins in 1246 species: Archae - 77; Bacteria - 2694; Metazoa - 1161; Fungi - 287; Plants - 1416; Viruses - 0; Other Eukaryotes - 995 (source: NCBI BLink).  protein_id AT4G10380.1p  transcript_id AT4G10380.1  protein_id AT4G10380.1p  transcript_id AT4G10380.1  
At4g10390	chr4:006442843	0.0	C/6442843-6443161,6441949-6442658	AT4G10390.1  CDS  gene_syn F7L13.4  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process response to wounding|GO:0009611|17675405|IEP  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: response to wounding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G33260.1); Has 78347 Blast hits to 77587 proteins in 2934 species: Archae - 49; Bacteria - 6940; Metazoa - 33590; Fungi - 6307; Plants - 17764; Viruses - 388; Other Eukaryotes - 13309 (source: NCBI BLink).  protein_id AT4G10390.1p  transcript_id AT4G10390.1  protein_id AT4G10390.1p  transcript_id AT4G10390.1  
At4g10400	chr4:006446891	0.0	C/6446891-6447715,6446670-6446807,6446335-6446601	AT4G10400.1  CDS  gene_syn F7L13.1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G09920.1); Has 1411 Blast hits to 1370 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1408; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G10400.1p  transcript_id AT4G10400.1  protein_id AT4G10400.1p  transcript_id AT4G10400.1  
At4g10400	chr4:006446891	0.0	C/6446891-6447715,6446670-6446807,6446335-6446601	AT4G10400.2  CDS  gene_syn F7L13.1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G09920.1); Has 1411 Blast hits to 1370 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1408; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G10400.2p  transcript_id AT4G10400.2  protein_id AT4G10400.2p  transcript_id AT4G10400.2  
At4g10410	chr4:006449575	0.0	C/6449575-6449998,6449219-6449424,6448983-6449144	AT4G10410.1  CDS  gene_syn F7L13.2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G10400.2); Has 667 Blast hits to 646 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 667; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G10410.1p  transcript_id AT4G10410.1  protein_id AT4G10410.1p  transcript_id AT4G10410.1  
At4g10414	chr4:006451317	0.0	C/6451317-6452716	AT4G10414.1  pseudogenic_transcript  pseudo  function Pseudogene of AT4G10430  
At4g10420	chr4:006453655	0.0	C/6453655-6454209,6453436-6453582,6453085-6453351	AT4G10420.1  CDS  gene_syn F7L13.3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G10400.2); Has 664 Blast hits to 644 proteins in 11 species: Archae - 0; Bacteria - 8; Metazoa - 17; Fungi - 0; Plants - 639; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G10420.1p  transcript_id AT4G10420.1  protein_id AT4G10420.1p  transcript_id AT4G10420.1  
At4g10430	chr4:006457642	0.0	C/6457642-6457690,6457469-6457563,6457283-6457387,6457114-6457193,6456158-6456248,6455971-6456078,6455797-6455883,6455326-6455374,6455153-6455241	AT4G10430.2  CDS  gene_syn F7L13.10, F7L13_10  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: TMPIT-like (InterPro:IPR012926); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G33230.1); Has 192 Blast hits to 192 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 142; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT4G10430.2p  transcript_id AT4G10430.2  protein_id AT4G10430.2p  transcript_id AT4G10430.2  
At4g10430	chr4:006457799	0.0	C/6457799-6457996,6457642-6457720,6457469-6457563,6457283-6457387,6457114-6457193,6456158-6456248,6455971-6456078,6455797-6455883,6455375-6455443,6455110-6455241	AT4G10430.1  CDS  gene_syn F7L13.10, F7L13_10  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: TMPIT-like (InterPro:IPR012926); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G33230.1); Has 196 Blast hits to 196 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 146; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT4G10430.1p  transcript_id AT4G10430.1  protein_id AT4G10430.1p  transcript_id AT4G10430.1  
At4g10430	chr4:006457799	0.0	C/6457799-6457996,6457642-6457720,6457469-6457563,6457283-6457387,6457114-6457193,6456158-6456248,6455971-6456078,6455797-6455883,6455375-6455443,6455110-6455241	AT4G10430.3  CDS  gene_syn F7L13.10, F7L13_10  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: TMPIT-like (InterPro:IPR012926); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G33230.1); Has 196 Blast hits to 196 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 146; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT4G10430.3p  transcript_id AT4G10430.3  protein_id AT4G10430.3p  transcript_id AT4G10430.3  
At4g10440	chr4:006461261	0.0	C/6461261-6461932,6460971-6461181,6460608-6460905,6460060-6460527,6459728-6459980	AT4G10440.1  CDS  gene_syn F7L13.20, F7L13_20  product dehydration-responsive family protein  note dehydration-responsive family protein; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive family protein (TAIR:AT1G33170.1); Has 575 Blast hits to 568 proteins in 70 species: Archae - 2; Bacteria - 81; Metazoa - 0; Fungi - 0; Plants - 481; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT4G10440.1p  transcript_id AT4G10440.1  protein_id AT4G10440.1p  transcript_id AT4G10440.1  
At4g10450	chr4:006464084	0.0	C/6464084-6464458,6463867-6463989,6463201-6463287	AT4G10450.1  CDS  gene_syn F7L13.30, F7L13_30  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L9 (RPL90D)  note 60S ribosomal protein L9 (RPL90D); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L6 (InterPro:IPR000702), Ribosomal protein L6, conserved site-2 (InterPro:IPR002359); BEST Arabidopsis thaliana protein match is: PGY2 (PIGGYBACK2); structural constituent of ribosome (TAIR:AT1G33140.1); Has 1804 Blast hits to 1801 proteins in 585 species: Archae - 226; Bacteria - 625; Metazoa - 306; Fungi - 114; Plants - 282; Viruses - 0; Other Eukaryotes - 251 (source: NCBI BLink).  protein_id AT4G10450.1p  transcript_id AT4G10450.1  protein_id AT4G10450.1p  transcript_id AT4G10450.1  
At4g10457	chr4:006467204	0.0	C/6467204-6467270,6466900-6467111	AT4G10457.1  CDS  gene_syn SCR-Like 1, SCRL1  gene SCRL1  function Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165||IEA  product SCRL1 (SCR-Like 1)  note SCR-Like 1 (SCRL1); INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility response (InterPro:IPR010682); BEST Arabidopsis thaliana protein match is: SCRL2 (SCR-Like 2) (TAIR:AT1G65113.1); Has 32 Blast hits to 32 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G10457.1p  transcript_id AT4G10457.1  protein_id AT4G10457.1p  transcript_id AT4G10457.1  
At4g10460	chr4:006468166	0.0	W/6468166-6472263	AT4G10460.1  mRNA_TE_gene  pseudo  gene_syn F7L13.40, F7L13_40  note Transposable element gene, copia-like retrotransposon family, has a 3.8e-291 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At4g10465	chr4:006473582	0.0	W/6473582-6473734,6474644-6474719,6474815-6475137	AT4G10465.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  product metal ion binding  note metal ion binding; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: metal ion binding (TAIR:AT2G18196.1); Has 611 Blast hits to 595 proteins in 40 species: Archae - 0; Bacteria - 18; Metazoa - 11; Fungi - 0; Plants - 581; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G10465.1p  transcript_id AT4G10465.1  protein_id AT4G10465.1p  transcript_id AT4G10465.1  
At4g10470	chr4:006476109	0.0	W/6476109-6476304,6476452-6477287,6477375-6477509	AT4G10470.1  CDS  gene_syn F7L13.50, F7L13_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G33050.2); Has 23 Blast hits to 11 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G10470.1p  transcript_id AT4G10470.1  protein_id AT4G10470.1p  transcript_id AT4G10470.1  
At4g10480	chr4:006479005	0.0	C/6479005-6479079,6478833-6478920,6478516-6478637,6478089-6478439	AT4G10480.2  CDS  gene_syn F7L13.60, F7L13_60  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative  note nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Nascent polypeptide-associated complex, alpha subunit (InterPro:IPR016641), Nascent polypeptide-associated complex NAC (InterPro:IPR002715); BEST Arabidopsis thaliana protein match is: NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5) (TAIR:AT1G33040.1); Has 857 Blast hits to 851 proteins in 236 species: Archae - 53; Bacteria - 7; Metazoa - 336; Fungi - 204; Plants - 105; Viruses - 7; Other Eukaryotes - 145 (source: NCBI BLink).  protein_id AT4G10480.2p  transcript_id AT4G10480.2  protein_id AT4G10480.2p  transcript_id AT4G10480.2  
At4g10480	chr4:006479005	0.0	C/6479005-6479079,6478833-6478920,6478516-6478640,6478089-6478439	AT4G10480.1  CDS  gene_syn F7L13.60, F7L13_60  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative  note nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Nascent polypeptide-associated complex, alpha subunit (InterPro:IPR016641), Nascent polypeptide-associated complex NAC (InterPro:IPR002715); BEST Arabidopsis thaliana protein match is: NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5) (TAIR:AT1G33040.1); Has 868 Blast hits to 860 proteins in 234 species: Archae - 53; Bacteria - 5; Metazoa - 324; Fungi - 191; Plants - 110; Viruses - 2; Other Eukaryotes - 183 (source: NCBI BLink).  protein_id AT4G10480.1p  transcript_id AT4G10480.1  protein_id AT4G10480.1p  transcript_id AT4G10480.1  
At4g10490	chr4:006483900	0.0	W/6483900-6484118,6484267-6484836,6484922-6485179	AT4G10490.1  CDS  gene_syn F7L13.70, F7L13_70  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process secondary metabolic process|GO:0019748||ISS  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: secondary metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G10500.1); Has 5920 Blast hits to 5891 proteins in 686 species: Archae - 0; Bacteria - 706; Metazoa - 123; Fungi - 604; Plants - 3096; Viruses - 0; Other Eukaryotes - 1391 (source: NCBI BLink).  protein_id AT4G10490.1p  transcript_id AT4G10490.1  protein_id AT4G10490.1p  transcript_id AT4G10490.1  
At4g10500	chr4:006491089	0.0	W/6491089-6491313,6491440-6492009,6492088-6492342	AT4G10500.1  CDS  gene_syn F7L13.80, F7L13_80  go_function oxidoreductase activity|GO:0016491||IEA  go_process secondary metabolic process|GO:0019748||ISS  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: secondary metabolic process; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G10490.1); Has 5895 Blast hits to 5859 proteins in 692 species: Archae - 0; Bacteria - 721; Metazoa - 125; Fungi - 608; Plants - 3102; Viruses - 0; Other Eukaryotes - 1339 (source: NCBI BLink).  protein_id AT4G10500.1p  transcript_id AT4G10500.1  protein_id AT4G10500.1p  transcript_id AT4G10500.1  
At4g10507	chr4:006494707	0.0	W/6494707-6495211	AT4G10507.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G10507.1  
At4g10510	chr4:006495955	0.0	W/6495955-6496017,6496094-6496185,6496262-6496359,6496487-6496642,6496728-6497398,6497488-6497576,6497646-6497894,6497968-6498082,6498167-6498359,6498439-6499010	AT4G10510.1  CDS  gene_syn F7L13.90, F7L13_90  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product subtilase family protein  note subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; EXPRESSED IN: male gametophyte, root; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT4G10540.1); Has 4308 Blast hits to 3959 proteins in 665 species: Archae - 150; Bacteria - 2401; Metazoa - 88; Fungi - 142; Plants - 919; Viruses - 0; Other Eukaryotes - 608 (source: NCBI BLink).  protein_id AT4G10510.1p  transcript_id AT4G10510.1  protein_id AT4G10510.1p  transcript_id AT4G10510.1  
At4g10520	chr4:006499794	0.0	W/6499794-6499877,6499958-6500049,6500153-6500250,6500343-6500498,6500575-6501227,6501317-6501387,6501492-6501728,6501800-6501914,6502012-6502204,6502295-6502866	AT4G10520.1  CDS  gene_syn F7L13.100, F7L13_100  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product subtilase family protein  note subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT4G10530.1); Has 4890 Blast hits to 4424 proteins in 760 species: Archae - 171; Bacteria - 2734; Metazoa - 141; Fungi - 201; Plants - 912; Viruses - 0; Other Eukaryotes - 731 (source: NCBI BLink).  protein_id AT4G10520.1p  transcript_id AT4G10520.1  protein_id AT4G10520.1p  transcript_id AT4G10520.1  
At4g10530	chr4:006508600	0.0	W/6508600-6508683,6508769-6508860,6508937-6509034,6509132-6509287,6509366-6510030,6510131-6510201,6510306-6510542,6510615-6510729,6510855-6511008,6511099-6511670	AT4G10530.1  CDS  gene_syn F7L13.110, F7L13_110  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product subtilase family protein  note subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT4G10520.1); Has 3045 Blast hits to 2774 proteins in 461 species: Archae - 78; Bacteria - 1635; Metazoa - 43; Fungi - 108; Plants - 897; Viruses - 0; Other Eukaryotes - 284 (source: NCBI BLink).  protein_id AT4G10530.1p  transcript_id AT4G10530.1  protein_id AT4G10530.1p  transcript_id AT4G10530.1  
At4g10540	chr4:006515657	0.0	C/6515657-6515743,6515491-6515582,6515237-6515334,6514941-6515096,6514157-6514833,6513973-6514061,6513637-6513885,6513450-6513564,6513163-6513355,6512515-6513086	AT4G10540.1  CDS  gene_syn F7L13.120, F7L13_120  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product subtilase family protein  note subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT4G10550.1); Has 3625 Blast hits to 3406 proteins in 589 species: Archae - 133; Bacteria - 1924; Metazoa - 95; Fungi - 126; Plants - 902; Viruses - 0; Other Eukaryotes - 445 (source: NCBI BLink).  protein_id AT4G10540.1p  transcript_id AT4G10540.1  protein_id AT4G10540.1p  transcript_id AT4G10540.1  
At4g10550	chr4:006519491	0.0	C/6519491-6519513,6519308-6519405,6519050-6519205,6518253-6518929,6518072-6518160,6517729-6517977,6517537-6517651,6517266-6517455,6516613-6517184	AT4G10550.2  CDS  gene_syn T4F9.10, T4F9_10  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product subtilase family protein  note subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT4G10540.1); Has 4202 Blast hits to 3843 proteins in 699 species: Archae - 144; Bacteria - 2284; Metazoa - 94; Fungi - 191; Plants - 900; Viruses - 0; Other Eukaryotes - 589 (source: NCBI BLink).  protein_id AT4G10550.2p  transcript_id AT4G10550.2  protein_id AT4G10550.2p  transcript_id AT4G10550.2  
At4g10550	chr4:006519669	0.0	C/6519669-6519767,6519491-6519582,6519308-6519405,6519050-6519205,6518253-6518929,6518072-6518160,6517729-6517977,6517537-6517651,6517266-6517455,6516613-6517184	AT4G10550.1  CDS  gene_syn T4F9.10, T4F9_10  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product subtilase family protein  note subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT4G10540.1); Has 4218 Blast hits to 3855 proteins in 700 species: Archae - 144; Bacteria - 2290; Metazoa - 94; Fungi - 194; Plants - 907; Viruses - 0; Other Eukaryotes - 589 (source: NCBI BLink).  protein_id AT4G10550.1p  transcript_id AT4G10550.1  protein_id AT4G10550.1p  transcript_id AT4G10550.1  
At4g10560	chr4:006520771	0.0	C/6520771-6522882	AT4G10560.1  CDS  gene_syn MEE53, T4F9.20, T4F9_20, maternal effect embryo arrest 53  gene MEE53  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  product MEE53 (maternal effect embryo arrest 53); protein binding / zinc ion binding  note maternal effect embryo arrest 53 (MEE53); FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT5G48320.1); Has 1080 Blast hits to 457 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1080; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G10560.1p  transcript_id AT4G10560.1  protein_id AT4G10560.1p  transcript_id AT4G10560.1  
At4g10570	chr4:006527907	0.0	C/6527907-6528058,6527422-6527634,6527174-6527318,6526968-6527027,6526748-6526846,6526119-6526496,6525893-6526033,6525645-6525815,6525250-6525507,6524995-6525149,6524371-6524904,6524008-6524278,6523657-6523851	AT4G10570.1  CDS  gene_syn T4F9.30, T4F9_30, UBIQUITIN-SPECIFIC PROTEASE 9, UBP9  gene UBP9  function encodes a ubiquitin-specific protease family member, UBP9.  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_function cysteine-type endopeptidase activity|GO:0004197||ISS  go_function ubiquitin thiolesterase activity|GO:0004221||ISS  product UBP9 (UBIQUITIN-SPECIFIC PROTEASE 9); cysteine-type endopeptidase/ ubiquitin thiolesterase  note UBIQUITIN-SPECIFIC PROTEASE 9 (UBP9); FUNCTIONS IN: cysteine-type endopeptidase activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin-specific peptidase, DUSP domain (InterPro:IPR006615), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Ubiquitin carboxyl-terminal hydrolase, N-terminal region 2 (InterPro:IPR010460); BEST Arabidopsis thaliana protein match is: ubiquitin carboxyl-terminal hydrolase family protein (TAIR:AT4G10590.2); Has 8976 Blast hits to 5903 proteins in 194 species: Archae - 0; Bacteria - 6; Metazoa - 5098; Fungi - 1279; Plants - 751; Viruses - 8; Other Eukaryotes - 1834 (source: NCBI BLink).  protein_id AT4G10570.1p  transcript_id AT4G10570.1  protein_id AT4G10570.1p  transcript_id AT4G10570.1  
At4g10580	chr4:006531382	0.0	C/6531382-6535751	AT4G10580.1  mRNA_TE_gene  pseudo  gene_syn T4F9.40, T4F9_40  note Transposable element gene, gypsy-like retrotransposon family, has a 1.1e-306 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At4g10590	chr4:006543121	0.0	C/6543121-6543272,6542621-6542833,6542373-6542517,6542168-6542227,6541953-6542051,6541386-6541760,6541157-6541297,6540877-6541047,6540494-6540751,6540235-6540389,6539605-6540138,6539242-6539512,6538919-6539077	AT4G10590.1  CDS  gene_syn T4F9.50, T4F9_50, UBIQUITIN-SPECIFIC PROTEASE 10, UBP10  gene UBP10  function encodes a member of the ubiquitin-specific protease family, UBP10  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_function cysteine-type endopeptidase activity|GO:0004197||ISS  go_function ubiquitin thiolesterase activity|GO:0004221||ISS  product ubiquitin carboxyl-terminal hydrolase family protein  note UBIQUITIN-SPECIFIC PROTEASE 10 (UBP10); FUNCTIONS IN: cysteine-type endopeptidase activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin-specific peptidase, DUSP domain (InterPro:IPR006615), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Ubiquitin carboxyl-terminal hydrolase, N-terminal region 2 (InterPro:IPR010460); BEST Arabidopsis thaliana protein match is: UBP9 (UBIQUITIN-SPECIFIC PROTEASE 9); cysteine-type endopeptidase/ ubiquitin thiolesterase (TAIR:AT4G10570.1); Has 8916 Blast hits to 5934 proteins in 194 species: Archae - 0; Bacteria - 6; Metazoa - 5070; Fungi - 1281; Plants - 740; Viruses - 8; Other Eukaryotes - 1811 (source: NCBI BLink).  protein_id AT4G10590.1p  transcript_id AT4G10590.1  protein_id AT4G10590.1p  transcript_id AT4G10590.1  
At4g10590	chr4:006543121	0.0	C/6543121-6543272,6542621-6542833,6542373-6542517,6542168-6542227,6541953-6542051,6541386-6541760,6541157-6541297,6540877-6541047,6540494-6540751,6540235-6540389,6539605-6540138,6539242-6539512,6538919-6539077	AT4G10590.2  CDS  gene_syn T4F9.50, T4F9_50, UBIQUITIN-SPECIFIC PROTEASE 10, UBP10  gene UBP10  function encodes a member of the ubiquitin-specific protease family, UBP10  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_function cysteine-type endopeptidase activity|GO:0004197||ISS  go_function ubiquitin thiolesterase activity|GO:0004221||ISS  product ubiquitin carboxyl-terminal hydrolase family protein  note UBIQUITIN-SPECIFIC PROTEASE 10 (UBP10); FUNCTIONS IN: cysteine-type endopeptidase activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin-specific peptidase, DUSP domain (InterPro:IPR006615), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Ubiquitin carboxyl-terminal hydrolase, N-terminal region 2 (InterPro:IPR010460); BEST Arabidopsis thaliana protein match is: UBP9 (UBIQUITIN-SPECIFIC PROTEASE 9); cysteine-type endopeptidase/ ubiquitin thiolesterase (TAIR:AT4G10570.1); Has 8916 Blast hits to 5934 proteins in 194 species: Archae - 0; Bacteria - 6; Metazoa - 5070; Fungi - 1281; Plants - 740; Viruses - 8; Other Eukaryotes - 1811 (source: NCBI BLink).  protein_id AT4G10590.2p  transcript_id AT4G10590.2  protein_id AT4G10590.2p  transcript_id AT4G10590.2  
At4g10595	chr4:006545340	0.0	W/6545340-6545400,6546193-6546401	AT4G10595.1  CDS  gene_syn LCR2, Low-molecular-weight cysteine-rich 2  gene LCR2  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR2 (Low-molecular-weight cysteine-rich 2)  note Low-molecular-weight cysteine-rich 2 (LCR2); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); BEST Arabidopsis thaliana protein match is: LCR34 (Low-molecular-weight cysteine-rich 34) (TAIR:AT4G09984.1); Has 21 Blast hits to 21 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G10595.1p  transcript_id AT4G10595.1  protein_id AT4G10595.1p  transcript_id AT4G10595.1  
At4g10596	chr4:006546697	0.0	C/6546697-6546795	AT4G10596.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G10596.1p  transcript_id AT4G10596.1  protein_id AT4G10596.1p  transcript_id AT4G10596.1  
At4g10600	chr4:006547934	0.0	C/6547934-6548647	AT4G10600.1  CDS  gene_syn T4F9.60, T4F9_60  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product PHD finger family protein  note PHD finger family protein; FUNCTIONS IN: protein binding, DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G32810.2); Has 305 Blast hits to 305 proteins in 69 species: Archae - 0; Bacteria - 0; Metazoa - 177; Fungi - 50; Plants - 71; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT4G10600.1p  transcript_id AT4G10600.1  protein_id AT4G10600.1p  transcript_id AT4G10600.1  
At4g10603	chr4:006550978	0.0	W/6550978-6551032,6551626-6551834	AT4G10603.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||IEA  product unknown protein  note INVOLVED IN: defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: LCR2 (Low-molecular-weight cysteine-rich 2) (TAIR:AT4G10595.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G10603.1p  transcript_id AT4G10603.1  protein_id AT4G10603.1p  transcript_id AT4G10603.1  
At4g10610	chr4:006557336	0.0	W/6557336-6557704,6557873-6557983,6558073-6558117,6558189-6558261,6558347-6558459,6558555-6558614,6558704-6558820,6558927-6558988,6559083-6559143	AT4G10610.1  CDS  gene_syn ATRBP37, CID12, RBP37, RNA-BINDING PROTEIN 37, T4F9.70, T4F9_70  gene CID12  function RNA-binding protein, putative. Member of a family of proteins having an PABC binding domain (PAM motif).  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723|9177318|IDA  go_function RNA binding|GO:0003723||ISS  product CID12; RNA binding  note CID12; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: RNA-binding protein, putative (TAIR:AT1G32790.1); Has 2251 Blast hits to 1850 proteins in 200 species: Archae - 0; Bacteria - 4; Metazoa - 1580; Fungi - 188; Plants - 326; Viruses - 0; Other Eukaryotes - 153 (source: NCBI BLink).  protein_id AT4G10610.1p  transcript_id AT4G10610.1  protein_id AT4G10610.1p  transcript_id AT4G10610.1  
At4g10610	chr4:006557336	0.0	W/6557336-6557704,6557873-6557983,6558073-6558117,6558189-6558261,6558347-6558459,6558555-6558614,6558704-6558820,6558927-6559019	AT4G10610.2  CDS  gene_syn ATRBP37, CID12, RBP37, RNA-BINDING PROTEIN 37, T4F9.70, T4F9_70  gene CID12  function RNA-binding protein, putative. Member of a family of proteins having an PABC binding domain (PAM motif).  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723|9177318|IDA  go_function RNA binding|GO:0003723||ISS  product CID12; RNA binding  note RNA-BINDING PROTEIN 37 (RBP37); FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: RNA-binding protein, putative (TAIR:AT1G32790.2); Has 2009 Blast hits to 1699 proteins in 186 species: Archae - 0; Bacteria - 4; Metazoa - 1386; Fungi - 162; Plants - 335; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT4G10610.2p  transcript_id AT4G10610.2  protein_id AT4G10610.2p  transcript_id AT4G10610.2  
At4g10613	chr4:006561039	0.0	W/6561039-6561479	AT4G10613.1  CDS  product unknown protein  note CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G33710.1); Has 210 Blast hits to 210 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 210; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G10613.1p  transcript_id AT4G10613.1  protein_id AT4G10613.1p  transcript_id AT4G10613.1  
At4g10620	chr4:006564297	0.0	W/6564297-6565517,6565598-6565765,6565998-6566402	AT4G10620.1  CDS  gene_syn T4F9.80, T4F9_80  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: GTP binding (TAIR:AT3G57180.1); Has 777 Blast hits to 699 proteins in 334 species: Archae - 15; Bacteria - 397; Metazoa - 157; Fungi - 74; Plants - 61; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT4G10620.1p  transcript_id AT4G10620.1  protein_id AT4G10620.1p  transcript_id AT4G10620.1  
At4g10630	chr4:006566625	0.0	C/6566625-6567629	AT4G10630.1  CDS  gene_syn T4F9.90, T4F9_90  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  go_component cellular_component|GO:0005575||ND  product glutaredoxin family protein  note glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: N-terminal protein myristoylation, cell redox homeostasis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin family protein (TAIR:AT1G32760.1); Has 304 Blast hits to 302 proteins in 52 species: Archae - 0; Bacteria - 2; Metazoa - 90; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT4G10630.1p  transcript_id AT4G10630.1  protein_id AT4G10630.1p  transcript_id AT4G10630.1  
At4g10640	chr4:006571999	0.0	W/6571999-6572109,6572205-6572435,6572770-6573057,6573145-6573267,6573794-6574312	AT4G10640.1  CDS  gene_syn IQ-domain 16, IQD16, T4F9.100, T4F9_100  gene IQD16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product IQD16 (IQ-domain 16); calmodulin binding  note IQ-domain 16 (IQD16); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: iqd17 (IQ-domain 17); calmodulin binding (TAIR:AT4G00820.1); Has 409 Blast hits to 408 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 2; Plants - 395; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G10640.1p  transcript_id AT4G10640.1  protein_id AT4G10640.1p  transcript_id AT4G10640.1  
At4g10650	chr4:006576061	0.0	C/6576061-6576231,6575791-6575976,6575546-6575696,6575406-6575476,6575132-6575228,6574828-6575018,6574472-6574738	AT4G10650.1  CDS  gene_syn T4F9.110, T4F9_110  go_component intracellular|GO:0005622||IEA  go_function GTP binding|GO:0005525||IEA  go_process biological_process|GO:0008150||ND  go_function GTP binding|GO:0005525||ISS  product GTP binding  note GTP binding; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: GTP-binding family protein (TAIR:AT2G41670.1); Has 1211 Blast hits to 1211 proteins in 545 species: Archae - 0; Bacteria - 900; Metazoa - 75; Fungi - 10; Plants - 47; Viruses - 0; Other Eukaryotes - 179 (source: NCBI BLink).  protein_id AT4G10650.1p  transcript_id AT4G10650.1  protein_id AT4G10650.1p  transcript_id AT4G10650.1  
At4g10655	chr4:006578839	0.0	W/6578839-6579024	AT4G10655.1  pseudogenic_transcript  pseudo  function Encodes a defensin-like (DEFL) family protein.  
At4g10660	chr4:006582535	0.0	W/6582535-6583488	AT4G10660.1  CDS  gene_syn T12H20.2, T12H20_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10695.1); Has 77 Blast hits to 70 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G10660.1p  transcript_id AT4G10660.1  protein_id AT4G10660.1p  transcript_id AT4G10660.1  
At4g10670	chr4:006584727	0.0	W/6584727-6585758	AT4G10670.1  CDS  gene_syn GLOBAL TRANSCRIPTION FACTOR GROUP C, GTC2, T4F9.130, T4F9_130  gene GTC2  function Homologous to yeast SPT16, a general chromatin factor required for transcription  go_process biological_process|GO:0008150||ND  product GTC2  note GTC2; INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: FACT complex subunit Spt16p/Cdc68p (InterPro:IPR013953); BEST Arabidopsis thaliana protein match is: SPT16 (global transcription factor C) (TAIR:AT4G10710.1); Has 321 Blast hits to 320 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 107; Fungi - 105; Plants - 37; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT4G10670.1p  transcript_id AT4G10670.1  protein_id AT4G10670.1p  transcript_id AT4G10670.1  
At4g10680	chr4:006587521	0.0	W/6587521-6588069	AT4G10680.1  CDS  gene_syn T12H20.17  go_component nucleus|GO:0005634||IEA  go_component transcription factor complex|GO:0005667||IEA  go_process transcription initiation|GO:0006352||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process translational initiation|GO:0006413||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function transcription regulator activity|GO:0030528||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||ISS  product transcription factor IIB (TFIIB) family protein  note transcription factor IIB (TFIIB) family protein; FUNCTIONS IN: protein binding, RNA polymerase II transcription factor activity, transcription regulator activity, zinc ion binding, translation initiation factor activity; INVOLVED IN: translational initiation, regulation of transcription, DNA-dependent, transcription initiation, regulation of transcription; LOCATED IN: transcription factor complex, nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Cyclin-like (InterPro:IPR011028), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-related (InterPro:IPR013763), Zinc finger, TFIIB-type (InterPro:IPR013137), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: transcription factor IIB (TFIIB) family protein (TAIR:AT3G29380.1); Has 825 Blast hits to 824 proteins in 228 species: Archae - 317; Bacteria - 0; Metazoa - 138; Fungi - 96; Plants - 77; Viruses - 2; Other Eukaryotes - 195 (source: NCBI BLink).  protein_id AT4G10680.1p  transcript_id AT4G10680.1  protein_id AT4G10680.1p  transcript_id AT4G10680.1  
At4g10690	chr4:006589132	0.0	W/6589132-6593688	AT4G10690.1  mRNA_TE_gene  pseudo  gene_syn T12H20.12  note Transposable element gene, copia-like retrotransposon family, has a 1.5e-256 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)  
At4g10695	chr4:006593774	0.0	C/6593774-6594478	AT4G10695.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10660.1); Has 104 Blast hits to 101 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G10695.1p  transcript_id AT4G10695.1  protein_id AT4G10695.1p  transcript_id AT4G10695.1  
At4g10700	chr4:006598397	0.0	C/6598397-6598658,6597863-6598344	AT4G10700.1  CDS  gene_syn T12H20.15, T12H20_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10660.1); Has 69 Blast hits to 47 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G10700.1p  transcript_id AT4G10700.1  protein_id AT4G10700.1p  transcript_id AT4G10700.1  
At4g10710	chr4:006602226	0.0	C/6602226-6605450	AT4G10710.1  CDS  gene_syn SPT16, T12H20.3, T12H20_3, global transcription factor C  gene SPT16  function encodes a component of the FAcilitates Chromatin Transcription (FACT) complex, SPT16.  go_component nucleolus|GO:0005730|15496452|IDA  go_process cellular process|GO:0009987||IEA  go_component nucleus|GO:0005634|15546350|IDA  go_component nuclear euchromatin|GO:0005719|15546350|IDA  go_component FACT complex|GO:0035101|15546350|IDA  product SPT16 (global transcription factor C)  note global transcription factor C (SPT16); INVOLVED IN: cellular process; LOCATED IN: FACT complex, nuclear euchromatin, nucleolus, nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1747, eukaryote (InterPro:IPR013719), Peptidase M24, structural domain (InterPro:IPR000994), FACT complex subunit Spt16p/Cdc68p (InterPro:IPR013953); BEST Arabidopsis thaliana protein match is: GTC2 (TAIR:AT4G10670.1); Has 36288 Blast hits to 8342 proteins in 786 species: Archae - 120; Bacteria - 22276; Metazoa - 7664; Fungi - 1494; Plants - 513; Viruses - 389; Other Eukaryotes - 3832 (source: NCBI BLink).  protein_id AT4G10710.1p  transcript_id AT4G10710.1  protein_id AT4G10710.1p  transcript_id AT4G10710.1  
At4g10720	chr4:006607879	0.0	W/6607879-6608191,6608334-6609002,6609102-6609358	AT4G10720.2  CDS  gene_syn T12H20.11, T12H20_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT5G54620.1); Has 18056 Blast hits to 8585 proteins in 352 species: Archae - 14; Bacteria - 887; Metazoa - 10621; Fungi - 754; Plants - 1104; Viruses - 52; Other Eukaryotes - 4624 (source: NCBI BLink).  protein_id AT4G10720.2p  transcript_id AT4G10720.2  protein_id AT4G10720.2p  transcript_id AT4G10720.2  
At4g10720	chr4:006607879	0.0	W/6607879-6608191,6608334-6609358	AT4G10720.1  CDS  gene_syn T12H20.11, T12H20_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT5G54620.1); Has 18093 Blast hits to 8637 proteins in 352 species: Archae - 14; Bacteria - 895; Metazoa - 10619; Fungi - 754; Plants - 1144; Viruses - 52; Other Eukaryotes - 4615 (source: NCBI BLink).  protein_id AT4G10720.1p  transcript_id AT4G10720.1  protein_id AT4G10720.1p  transcript_id AT4G10720.1  
At4g10730	chr4:006614758	0.0	C/6614758-6614786,6614434-6614665,6613362-6613616,6613156-6613280,6613016-6613060,6612635-6612716,6612504-6612572,6612240-6612410,6612095-6612160,6611945-6612013,6611775-6611846,6611400-6611677,6611159-6611280,6610973-6611067,6610724-6610780,6610558-6610650,6610397-6610451,6610256-6610311,6610109-6610176,6609965-6610016,6609793-6609837	AT4G10730.1  CDS  gene_syn T12H20.4, T12H20_4  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: stem, cultured cell; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G24100.1); Has 90048 Blast hits to 88728 proteins in 2600 species: Archae - 48; Bacteria - 7886; Metazoa - 39355; Fungi - 8004; Plants - 17765; Viruses - 563; Other Eukaryotes - 16427 (source: NCBI BLink).  protein_id AT4G10730.1p  transcript_id AT4G10730.1  protein_id AT4G10730.1p  transcript_id AT4G10730.1  
At4g10740	chr4:006617143	0.0	C/6617143-6618426	AT4G10740.1  CDS  gene_syn T12H20.5, T12H20_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: type 2 peroxiredoxin-related / thiol specific antioxidant / mal allergen family protein (TAIR:AT1G65990.1); Has 546 Blast hits to 524 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 544; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G10740.1p  transcript_id AT4G10740.1  protein_id AT4G10740.1p  transcript_id AT4G10740.1  
At4g10750	chr4:006618724	0.0	W/6618724-6619800	AT4G10750.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_process gluconeogenesis|GO:0006094||IEA  go_process glycolysis|GO:0006096||IEA  go_process cellular aromatic compound metabolic process|GO:0006725||IEA  go_process reductive pentose-phosphate cycle|GO:0019253||IEA  go_process anaerobic glycolysis|GO:0019642||IEA  go_process formaldehyde assimilation via xylulose monophosphate cycle|GO:0019648||IEA  go_process glucose catabolic process to butanediol|GO:0019650||IEA  go_process acetate fermentation|GO:0019654||IEA  go_function catalytic activity|GO:0003824||IEA  go_function carbon-carbon lyase activity|GO:0016830||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  product HpcH/HpaI aldolase family protein  note HpcH/HpaI aldolase family protein; FUNCTIONS IN: carbon-carbon lyase activity, catalytic activity; INVOLVED IN: in 8 processes; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), HpcH/HpaI aldolase (InterPro:IPR005000); BEST Arabidopsis thaliana protein match is: ALL1 (Aldolase like); carbon-carbon lyase/ catalytic (TAIR:AT4G24080.1); Has 2940 Blast hits to 2939 proteins in 494 species: Archae - 8; Bacteria - 1472; Metazoa - 0; Fungi - 122; Plants - 25; Viruses - 0; Other Eukaryotes - 1313 (source: NCBI BLink).  protein_id AT4G10750.1p  transcript_id AT4G10750.1  protein_id AT4G10750.1p  transcript_id AT4G10750.1  
At4g10760	chr4:006622239	0.0	C/6622239-6623312,6621377-6621475,6621079-6621162,6620656-6620987,6620363-6620579,6620192-6620271,6619947-6620118	AT4G10760.1  CDS  gene_syn EMB1706, EMBRYO DEFECTIVE 1706, MRNA ADENOSINE METHYLASE, MTA, T12H20.6, T12H20_6  gene MTA  go_component chloroplast|GO:0009507|18431481|IDA  go_function methyltransferase activity|GO:0008168||IEA  go_component nuclear speck|GO:0016607|18505803|IDA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process mRNA methylation|GO:0080009|18505803|IMP  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757||ISS  product MTA (MRNA ADENOSINE METHYLASE); S-adenosylmethionine-dependent methyltransferase/ methyltransferase  note MRNA ADENOSINE METHYLASE (MTA); FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity; INVOLVED IN: embryonic development ending in seed dormancy, mRNA methylation; LOCATED IN: nuclear speck, chloroplast; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MT-A70 (InterPro:IPR007757); BEST Arabidopsis thaliana protein match is: EMB1691 (EMBRYO DEFECTIVE 1691); S-adenosylmethionine-dependent methyltransferase/ methyltransferase/ nucleic acid binding (TAIR:AT4G09980.1); Has 784 Blast hits to 758 proteins in 172 species: Archae - 6; Bacteria - 154; Metazoa - 259; Fungi - 58; Plants - 65; Viruses - 6; Other Eukaryotes - 236 (source: NCBI BLink).  protein_id AT4G10760.1p  transcript_id AT4G10760.1  protein_id AT4G10760.1p  transcript_id AT4G10760.1  
At4g10767	chr4:006627036	0.0	W/6627036-6627102,6627260-6627522	AT4G10767.1  CDS  gene_syn SCR-Like 21, SCRL21  gene SCRL21  function Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165||IEA  product SCRL21 (SCR-Like 21)  note SCR-Like 21 (SCRL21); INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility response (InterPro:IPR010682); BEST Arabidopsis thaliana protein match is: SCRL20 (SCR-Like 20) (TAIR:AT4G10115.1); Has 11 Blast hits to 11 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G10767.1p  transcript_id AT4G10767.1  protein_id AT4G10767.1p  transcript_id AT4G10767.1  
At4g10770	chr4:006632487	0.0	C/6632487-6632517,6632014-6632412,6631723-6631877,6631551-6631648,6630596-6630865,6630026-6630325,6629634-6629889,6629350-6629532,6628646-6629254	AT4G10770.1  CDS  gene_syn ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, ATOPT7, OLIGOPEPTIDE TRANSPORTER 7, OPT7, T12H20.7, T12H20_7  gene OPT7  function oligopeptide transporter  go_component membrane|GO:0016020|11788749|ISS  go_process oligopeptide transport|GO:0006857|11788749|IGI  go_function oligopeptide transporter activity|GO:0015198|11788749|IGI  go_function oligopeptide transporter activity|GO:0015198||ISS  product OPT7 (OLIGOPEPTIDE TRANSPORTER 7); oligopeptide transporter  note OLIGOPEPTIDE TRANSPORTER 7 (OPT7); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetrapeptide transporter, OPT1/isp4 (InterPro:IPR004648), Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: OPT6 (OLIGOPEPTIDE TRANSPORTER 1); oligopeptide transporter (TAIR:AT4G27730.1); Has 775 Blast hits to 759 proteins in 83 species: Archae - 0; Bacteria - 26; Metazoa - 0; Fungi - 565; Plants - 179; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G10770.1p  transcript_id AT4G10770.1  protein_id AT4G10770.1p  transcript_id AT4G10770.1  
At4g10780	chr4:006634779	0.0	C/6634779-6637457	AT4G10780.1  CDS  gene_syn T12H20.8, T12H20_8  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process apoptosis|GO:0006915||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative  note disease resistance protein (CC-NBS-LRR class), putative; FUNCTIONS IN: protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response, apoptosis; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT1G12290.1); Has 12251 Blast hits to 11245 proteins in 498 species: Archae - 13; Bacteria - 764; Metazoa - 1638; Fungi - 185; Plants - 9431; Viruses - 0; Other Eukaryotes - 220 (source: NCBI BLink).  protein_id AT4G10780.1p  transcript_id AT4G10780.1  protein_id AT4G10780.1p  transcript_id AT4G10780.1  
At4g10790	chr4:006642196	0.0	C/6642196-6643035,6641712-6641882,6641411-6641614,6640752-6640979	AT4G10790.1  CDS  gene_syn T12H20.9, T12H20_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product UBX domain-containing protein  note UBX domain-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UAS (InterPro:IPR006577), UBX (InterPro:IPR001012); BEST Arabidopsis thaliana protein match is: SAY1 (TAIR:AT4G11740.1); Has 16384 Blast hits to 7928 proteins in 781 species: Archae - 7; Bacteria - 2234; Metazoa - 5947; Fungi - 1696; Plants - 733; Viruses - 184; Other Eukaryotes - 5583 (source: NCBI BLink).  protein_id AT4G10790.1p  transcript_id AT4G10790.1  protein_id AT4G10790.1p  transcript_id AT4G10790.1  
At4g10800	chr4:006643678	0.0	W/6643678-6644529	AT4G10800.1  CDS  gene_syn F25I24.10, F25I24_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: protein binding (TAIR:AT3G05675.2); Has 114 Blast hits to 114 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G10800.1p  transcript_id AT4G10800.1  protein_id AT4G10800.1p  transcript_id AT4G10800.1  
At4g10810	chr4:006645986	0.0	C/6645986-6646231	AT4G10810.1  CDS  gene_syn F25I24.20, F25I24_20  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24026.1); Has 38 Blast hits to 38 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G10810.1p  transcript_id AT4G10810.1  protein_id AT4G10810.1p  transcript_id AT4G10810.1  
At4g10815	chr4:006646430	0.0	W/6646430-6646500	AT4G10815.1  tRNA  gene_syn 67103.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: CCC)  transcript_id AT4G10815.1  
At4g10820	chr4:006648543	0.0	C/6648543-6648909,6648009-6648463	AT4G10820.1  CDS  gene_syn F25I24.30, F25I24_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G25290.1); Has 117 Blast hits to 117 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G10820.1p  transcript_id AT4G10820.1  protein_id AT4G10820.1p  transcript_id AT4G10820.1  
At4g10830	chr4:006650724	0.0	W/6650724-6654712	AT4G10830.1  mRNA_TE_gene  pseudo  gene_syn F25I24.40, F25I24_40  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.1e-39 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At4g10840	chr4:006656614	0.0	W/6656614-6657299,6657407-6658020,6658407-6658698,6658796-6659033	AT4G10840.1  CDS  gene_syn F25I24.50, F25I24_50  go_component plasma membrane|GO:0005886|17317660|IDA  go_function binding|GO:0005488||IEA  product kinesin light chain-related  note kinesin light chain-related; FUNCTIONS IN: binding; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: kinesin light chain-related (TAIR:AT3G27960.1); Has 11121 Blast hits to 4321 proteins in 387 species: Archae - 236; Bacteria - 3062; Metazoa - 5775; Fungi - 596; Plants - 190; Viruses - 6; Other Eukaryotes - 1256 (source: NCBI BLink).  protein_id AT4G10840.1p  transcript_id AT4G10840.1  protein_id AT4G10840.1p  transcript_id AT4G10840.1  
At4g10840	chr4:006656614	0.0	W/6656614-6657299,6657407-6658020,6658407-6658702	AT4G10840.2  CDS  gene_syn F25I24.50, F25I24_50  go_component plasma membrane|GO:0005886|17317660|IDA  go_function binding|GO:0005488||IEA  product kinesin light chain-related  note kinesin light chain-related; FUNCTIONS IN: binding; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: kinesin light chain-related (TAIR:AT3G27960.1); Has 9015 Blast hits to 3672 proteins in 347 species: Archae - 155; Bacteria - 2443; Metazoa - 4903; Fungi - 379; Plants - 236; Viruses - 6; Other Eukaryotes - 893 (source: NCBI BLink).  protein_id AT4G10840.2p  transcript_id AT4G10840.2  protein_id AT4G10840.2p  transcript_id AT4G10840.2  
At4g10845	chr4:006662595	0.0	W/6662595-6662641,6662730-6662808,6663195-6663305,6663381-6663461	AT4G10845.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38760.1); Has 2 Blast hits to 2 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G10845.1p  transcript_id AT4G10845.1  protein_id AT4G10845.1p  transcript_id AT4G10845.1  
At4g10850	chr4:006675068	0.0	W/6675068-6675116,6675207-6675243,6675645-6676026,6676229-6676348,6676530-6676718	AT4G10850.1  CDS  gene_syn F25I24.60, F25I24_60  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  product nodulin MtN3 family protein  note nodulin MtN3 family protein; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: MtN3 and saliva related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), MtN3 and saliva related transmembrane protein (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: nodulin MtN3 family protein (TAIR:AT1G66770.1); Has 542 Blast hits to 529 proteins in 97 species: Archae - 0; Bacteria - 9; Metazoa - 178; Fungi - 0; Plants - 295; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT4G10850.1p  transcript_id AT4G10850.1  protein_id AT4G10850.1p  transcript_id AT4G10850.1  
At4g10860	chr4:006678900	0.0	C/6678900-6679436	AT4G10860.1  CDS  gene_syn F25I24.70, F25I24_70  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10880.1); Has 13 Blast hits to 13 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G10860.1p  transcript_id AT4G10860.1  protein_id AT4G10860.1p  transcript_id AT4G10860.1  
At4g10865	chr4:006681722	0.0	C/6681722-6682462	AT4G10865.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retroelement reverse transcriptase  
At4g10870	chr4:006683555	0.0	C/6683555-6684076	AT4G10870.1  CDS  gene_syn F25I24.80, F25I24_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10880.1); Has 13 Blast hits to 13 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G10870.1p  transcript_id AT4G10870.1  protein_id AT4G10870.1p  transcript_id AT4G10870.1  
At4g10880	chr4:006685829	0.0	C/6685829-6686347	AT4G10880.1  CDS  gene_syn F25I24.90, F25I24_90  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10870.1); Has 13 Blast hits to 13 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G10880.1p  transcript_id AT4G10880.1  protein_id AT4G10880.1p  transcript_id AT4G10880.1  
At4g10890	chr4:006688833	0.0	W/6688833-6689043,6689215-6689487,6689992-6690142,6690303-6690492,6691006-6691240,6691336-6691407,6691528-6691587,6692079-6692147,6692341-6692418,6692520-6692666,6692840-6692937	AT4G10890.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2439 (InterPro:IPR018838); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 352 Blast hits to 340 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 30; Plants - 305; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G10890.1p  transcript_id AT4G10890.1  protein_id AT4G10890.1p  transcript_id AT4G10890.1  
At4g10895	chr4:006694465	0.0	C/6694465-6694710,6693999-6694178	AT4G10895.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Expressed protein  note Expressed protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04047.1); Has 16 Blast hits to 16 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G10895.1p  transcript_id AT4G10895.1  protein_id AT4G10895.1p  transcript_id AT4G10895.1  
At4g10910	chr4:006696933	0.0	W/6696933-6697343	AT4G10910.1  CDS  gene_syn F25I24.120, F25I24_120  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, leaf apex, hypocotyl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G10910.1p  transcript_id AT4G10910.1  protein_id AT4G10910.1p  transcript_id AT4G10910.1  
At4g10920	chr4:006698804	0.0	C/6698804-6699103,6698520-6698625,6697894-6697985	AT4G10920.1  CDS  gene_syn F25I24.130, F25I24_130, KELP  gene KELP  function Transcriptional co-activator. Forms homodimers or heterodimers with the kiwi protein. Both proteins are involved in gene activation during pathogen defense and plant development.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription coactivator activity|GO:0003713||ISS  go_function transcription regulator activity|GO:0030528|9681033|ISS  product KELP; DNA binding / transcription coactivator/ transcription regulator  note KELP; FUNCTIONS IN: transcription coactivator activity, transcription regulator activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional coactivator p15 (InterPro:IPR003173), ssDNA-binding transcriptional regulator (InterPro:IPR009044), RNA polymerase II transcriptional coactivator KELP (InterPro:IPR017415), DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: zinc knuckle (CCHC-type) family protein (TAIR:AT4G00980.1); Has 334 Blast hits to 327 proteins in 113 species: Archae - 0; Bacteria - 4; Metazoa - 143; Fungi - 69; Plants - 79; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT4G10920.1p  transcript_id AT4G10920.1  protein_id AT4G10920.1p  transcript_id AT4G10920.1  
At4g10920	chr4:006698804	0.0	C/6698804-6699103,6698520-6698625,6697894-6697985	AT4G10920.2  CDS  gene_syn F25I24.130, F25I24_130, KELP  gene KELP  function Transcriptional co-activator. Forms homodimers or heterodimers with the kiwi protein. Both proteins are involved in gene activation during pathogen defense and plant development.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription coactivator activity|GO:0003713||ISS  go_function transcription regulator activity|GO:0030528|9681033|ISS  product KELP; DNA binding / transcription coactivator/ transcription regulator  note KELP; FUNCTIONS IN: transcription coactivator activity, transcription regulator activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ssDNA-binding transcriptional regulator (InterPro:IPR009044), Transcriptional coactivator p15 (InterPro:IPR003173), RNA polymerase II transcriptional coactivator KELP (InterPro:IPR017415), DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: zinc knuckle (CCHC-type) family protein (TAIR:AT4G00980.1); Has 334 Blast hits to 327 proteins in 113 species: Archae - 0; Bacteria - 4; Metazoa - 143; Fungi - 69; Plants - 79; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT4G10920.2p  transcript_id AT4G10920.2  protein_id AT4G10920.2p  transcript_id AT4G10920.2  
At4g10925	chr4:006704035	0.0	C/6704035-6704283,6703670-6703866,6702987-6703236	AT4G10925.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G23960.1); Has 131 Blast hits to 131 proteins in 34 species: Archae - 0; Bacteria - 51; Metazoa - 1; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT4G10925.1p  transcript_id AT4G10925.1  protein_id AT4G10925.1p  transcript_id AT4G10925.1  
At4g10925	chr4:006704035	0.0	C/6704035-6704283,6703670-6703866,6702987-6703236	AT4G10925.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G23960.1); Has 131 Blast hits to 131 proteins in 34 species: Archae - 0; Bacteria - 51; Metazoa - 1; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT4G10925.2p  transcript_id AT4G10925.2  protein_id AT4G10925.2p  transcript_id AT4G10925.2  
At4g10930	chr4:006708456	0.0	C/6708456-6708846,6708320-6708364,6708131-6708206,6706929-6708018,6706767-6706841,6705495-6706541,6705178-6705408	AT4G10930.1  CDS  gene_syn F25I24.140, F25I24_140  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 713 Blast hits to 520 proteins in 141 species: Archae - 0; Bacteria - 95; Metazoa - 282; Fungi - 134; Plants - 28; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink).  protein_id AT4G10930.1p  transcript_id AT4G10930.1  protein_id AT4G10930.1p  transcript_id AT4G10930.1  
At4g10940	chr4:006710861	0.0	C/6710861-6710923,6710483-6710568,6710285-6710375,6710123-6710172,6709806-6709893,6709627-6709736,6709168-6709233,6708982-6709006	AT4G10940.1  CDS  gene_syn F25I24.150, F25I24_150  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function zinc ion binding|GO:0008270||ISS  product PHD finger family protein  note PHD finger family protein; FUNCTIONS IN: protein binding, DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: stem, embryo, flower, seed; EXPRESSED DURING: C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT3G05670.1); Has 806 Blast hits to 806 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 280; Fungi - 79; Plants - 131; Viruses - 159; Other Eukaryotes - 157 (source: NCBI BLink).  protein_id AT4G10940.1p  transcript_id AT4G10940.1  protein_id AT4G10940.1p  transcript_id AT4G10940.1  
At4g10950	chr4:006713146	0.0	C/6713146-6713512,6712842-6712957,6712509-6712748,6711941-6712196,6711502-6711725	AT4G10950.1  CDS  gene_syn F25I24.160, F25I24_160  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_component cellular_component|GO:0005575||ND  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT5G08460.1); Has 1862 Blast hits to 1844 proteins in 177 species: Archae - 0; Bacteria - 275; Metazoa - 1; Fungi - 28; Plants - 1541; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT4G10950.1p  transcript_id AT4G10950.1  protein_id AT4G10950.1p  transcript_id AT4G10950.1  
At4g10955	chr4:006715308	0.0	C/6715308-6715372,6714323-6714906,6713778-6714181	AT4G10955.1  CDS  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_component cellular_component|GO:0005575||ND  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product lipase class 3 family protein  note lipase class 3 family protein; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: lipase class 3 family protein (TAIR:AT2G05260.1); Has 117 Blast hits to 117 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G10955.1p  transcript_id AT4G10955.1  protein_id AT4G10955.1p  transcript_id AT4G10955.1  
At4g10960	chr4:006718287	0.0	C/6718287-6718472,6717576-6717625,6717313-6717448,6717118-6717219,6716809-6717036,6716656-6716734,6716487-6716569,6716310-6716401,6716083-6716182	AT4G10960.1  CDS  gene_syn F25I24.170, F25I24_170, UDP-D-glucose/UDP-D-galactose 4-epimerase 5, UGE5  gene UGE5  function Encodes a protein with UDP-D-glucose 4-epimerase activity.  go_component endomembrane system|GO:0012505||IEA  go_process response to stress|GO:0006950|17496119|IMP  go_function UDP-glucose 4-epimerase activity|GO:0003978|16644739|IDA  go_function UDP-glucose 4-epimerase activity|GO:0003978|17496119|IDA  go_function protein dimerization activity|GO:0046983|16644739|IPI  product UGE5 (UDP-D-glucose/UDP-D-galactose 4-epimerase 5); UDP-glucose 4-epimerase/ protein dimerization  note UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (UGE5); FUNCTIONS IN: UDP-glucose 4-epimerase activity, protein dimerization activity; INVOLVED IN: response to stress; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, guard cell, root, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2); UDP-glucose 4-epimerase/ protein dimerization (TAIR:AT4G23920.1); Has 30904 Blast hits to 30892 proteins in 1714 species: Archae - 493; Bacteria - 14622; Metazoa - 594; Fungi - 394; Plants - 700; Viruses - 26; Other Eukaryotes - 14075 (source: NCBI BLink).  protein_id AT4G10960.1p  transcript_id AT4G10960.1  protein_id AT4G10960.1p  transcript_id AT4G10960.1  
At4g10970	chr4:006721816	0.0	C/6721816-6721831,6721664-6721728,6721492-6721578,6721247-6721386,6720568-6720714,6720392-6720490,6720102-6720156,6719718-6719954	AT4G10970.6  CDS  gene_syn F25I24.180, F25I24_180  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23910.1).  protein_id AT4G10970.6p  transcript_id AT4G10970.6  protein_id AT4G10970.6p  transcript_id AT4G10970.6  
At4g10970	chr4:006721816	0.0	C/6721816-6721831,6721664-6721728,6721492-6721578,6721247-6721386,6720676-6720714,6720102-6720156,6719718-6719954	AT4G10970.5  CDS  gene_syn F25I24.180, F25I24_180  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23910.1).  protein_id AT4G10970.5p  transcript_id AT4G10970.5  protein_id AT4G10970.5p  transcript_id AT4G10970.5  
At4g10970	chr4:006721816	0.0	C/6721816-6721885,6721664-6721728,6721492-6721578,6721247-6721386,6720102-6720156,6719718-6719954	AT4G10970.1  CDS  gene_syn F25I24.180, F25I24_180  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23910.1); Has 32 Blast hits to 32 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G10970.1p  transcript_id AT4G10970.1  protein_id AT4G10970.1p  transcript_id AT4G10970.1  
At4g10970	chr4:006721816	0.0	C/6721816-6721885,6721664-6721728,6721492-6721578,6721247-6721386,6720102-6720156,6719718-6719954	AT4G10970.2  CDS  gene_syn F25I24.180, F25I24_180  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23910.1); Has 32 Blast hits to 32 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G10970.2p  transcript_id AT4G10970.2  protein_id AT4G10970.2p  transcript_id AT4G10970.2  
At4g10970	chr4:006721816	0.0	C/6721816-6721885,6721664-6721728,6721492-6721578,6721247-6721386,6720102-6720156,6719718-6719954	AT4G10970.3  CDS  gene_syn F25I24.180, F25I24_180  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23910.1); Has 32 Blast hits to 32 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G10970.3p  transcript_id AT4G10970.3  protein_id AT4G10970.3p  transcript_id AT4G10970.3  
At4g10970	chr4:006721816	0.0	C/6721816-6721885,6721664-6721728,6721492-6721578,6721247-6721386,6720102-6720156,6719718-6719954	AT4G10970.4  CDS  gene_syn F25I24.180, F25I24_180  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23910.1); Has 32 Blast hits to 32 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G10970.4p  transcript_id AT4G10970.4  protein_id AT4G10970.4p  transcript_id AT4G10970.4  
At4g10980	chr4:006723801	0.0	W/6723801-6724685	AT4G10980.1  mRNA_TE_gene  pseudo  gene_syn F25I24.190, F25I24_190  note Transposable element gene, copia-like retrotransposon family, has a 2.7e-44 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At4g10990	chr4:006724987	0.0	W/6724987-6729975	AT4G10990.1  mRNA_TE_gene  pseudo  gene_syn F25I24.200, F25I24_200  note Transposable element gene, copia-like retrotransposon family, has a 1.2e-190 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At4g11000	chr4:006731020	0.0	W/6731020-6731388,6731482-6731589,6731721-6732464	AT4G11000.1  CDS  gene_syn T22B4.2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT4G10720.1); Has 4707 Blast hits to 2984 proteins in 183 species: Archae - 4; Bacteria - 244; Metazoa - 2377; Fungi - 95; Plants - 892; Viruses - 16; Other Eukaryotes - 1079 (source: NCBI BLink).  protein_id AT4G11000.1p  transcript_id AT4G11000.1  protein_id AT4G11000.1p  transcript_id AT4G11000.1  
At4g11010	chr4:006734217	0.0	C/6734217-6734298,6733767-6733907,6733560-6733597,6733429-6733479,6733171-6733338,6732982-6733094,6732780-6732903	AT4G11010.1  CDS  gene_syn NDPK3, NUCLEOSIDE DIPHOSPHATE KINASE 3, T22B4.4  gene NDPK3  function nucleoside diphosphate kinase 3 (ndpk3), located to the inter-membrane space in mitochondria  go_component mitochondrion|GO:0005739|18385124|IDA  go_function nucleoside diphosphate kinase activity|GO:0004550||IEA  go_function ATP binding|GO:0005524||IEA  go_component mitochondrion|GO:0005739|11743114|IDA  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component mitochondrial inner membrane|GO:0005743|11718729|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process response to oxidative stress|GO:0006979|12492832|IDA  go_function nucleoside diphosphate kinase activity|GO:0004550||ISS  go_function ATP binding|GO:0005524||ISS  product NDPK3 (NUCLEOSIDE DIPHOSPHATE KINASE 3); ATP binding / nucleoside diphosphate kinase  note NUCLEOSIDE DIPHOSPHATE KINASE 3 (NDPK3); FUNCTIONS IN: nucleoside diphosphate kinase activity, ATP binding; INVOLVED IN: response to oxidative stress; LOCATED IN: mitochondrion, mitochondrial inner membrane, plastid; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside diphosphate kinase, core (InterPro:IPR001564); BEST Arabidopsis thaliana protein match is: nucleoside diphosphate kinase 4 (NDK4) (TAIR:AT4G23900.1); Has 6364 Blast hits to 6247 proteins in 1550 species: Archae - 205; Bacteria - 2599; Metazoa - 868; Fungi - 116; Plants - 246; Viruses - 17; Other Eukaryotes - 2313 (source: NCBI BLink).  protein_id AT4G11010.1p  transcript_id AT4G11010.1  protein_id AT4G11010.1p  transcript_id AT4G11010.1  
At4g11020	chr4:006735728	0.0	C/6735728-6736075,6734777-6734908	AT4G11020.1  CDS  gene_syn T22B4.3  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23870.1); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G11020.1p  transcript_id AT4G11020.1  protein_id AT4G11020.1p  transcript_id AT4G11020.1  
At4g11030	chr4:006738120	0.0	W/6738120-6738274,6738799-6738862,6738963-6739052,6739153-6739209,6739295-6739343,6739432-6739508,6739605-6739644,6739730-6739824,6739909-6740076,6740163-6740273,6740360-6740447,6740565-6740631,6740705-6740780,6740855-6740972,6741045-6741290,6741397-6741536,6741717-6741899,6741972-6742091,6742173-6742229	AT4G11030.1  CDS  gene_syn T22B4.10, T22B4_10  go_function catalytic activity|GO:0003824||IEA  go_process fatty acid biosynthetic process|GO:0006633|9106514|TAS  product long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative  note long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative; FUNCTIONS IN: catalytic activity; INVOLVED IN: fatty acid biosynthetic process; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetase (TAIR:AT4G23850.1); Has 34011 Blast hits to 32021 proteins in 1940 species: Archae - 459; Bacteria - 17860; Metazoa - 1986; Fungi - 1216; Plants - 1164; Viruses - 1; Other Eukaryotes - 11325 (source: NCBI BLink).  protein_id AT4G11030.1p  transcript_id AT4G11030.1  protein_id AT4G11030.1p  transcript_id AT4G11030.1  
At4g11040	chr4:006745161	0.0	W/6745161-6745299,6745579-6746051,6746221-6746372,6746544-6746667	AT4G11040.1  CDS  gene_syn T22B4.20, T22B4_20  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT2G29380.1); Has 612 Blast hits to 611 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 108; Fungi - 67; Plants - 311; Viruses - 3; Other Eukaryotes - 123 (source: NCBI BLink).  protein_id AT4G11040.1p  transcript_id AT4G11040.1  protein_id AT4G11040.1p  transcript_id AT4G11040.1  
At4g11050	chr4:006751111	0.0	C/6751111-6751311,6750512-6750724,6750204-6750404,6749853-6749942,6749601-6749765,6749216-6749500,6748122-6748470,6747900-6747974,6747498-6747799	AT4G11050.1  CDS  gene_syn Arabidopsis thaliana glycosyl hydrolase 9C3, AtGH9C3, T22B4.30, T22B4_30  gene AtGH9C3  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function carbohydrate binding|GO:0030246||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product AtGH9C3 (Arabidopsis thaliana glycosyl hydrolase 9C3); carbohydrate binding / catalytic/ hydrolase, hydrolyzing O-glycosyl compounds  note Arabidopsis thaliana glycosyl hydrolase 9C3 (AtGH9C3); FUNCTIONS IN: carbohydrate binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Carbohydrate-binding (InterPro:IPR008965), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: AtGH9C2 (Arabidopsis thaliana glycosyl hydrolase 9C2); carbohydrate binding / catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G64390.1); Has 1207 Blast hits to 1198 proteins in 196 species: Archae - 0; Bacteria - 379; Metazoa - 132; Fungi - 14; Plants - 625; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT4G11050.1p  transcript_id AT4G11050.1  protein_id AT4G11050.1p  transcript_id AT4G11050.1  
At4g11060	chr4:006756170	0.0	C/6756170-6756230,6755925-6756082,6755460-6755668,6755056-6755156,6754924-6754983,6754820-6754836	AT4G11060.1  CDS  gene_syn MTSSB, T22B4.40, T22B4_40, mitochondrially targeted single-stranded DNA binding protein  gene MTSSB  go_function single-stranded DNA binding|GO:0003697||IEA  go_function single-stranded DNA binding|GO:0003697||ISS  product MTSSB (mitochondrially targeted single-stranded DNA binding protein); single-stranded DNA binding  note mitochondrially targeted single-stranded DNA binding protein (MTSSB); FUNCTIONS IN: single-stranded DNA binding; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Primosome PriB/single-strand DNA-binding (InterPro:IPR000424); BEST Arabidopsis thaliana protein match is: single-strand-binding family protein (TAIR:AT3G18580.1); Has 2834 Blast hits to 2834 proteins in 666 species: Archae - 0; Bacteria - 1504; Metazoa - 89; Fungi - 0; Plants - 38; Viruses - 17; Other Eukaryotes - 1186 (source: NCBI BLink).  protein_id AT4G11060.1p  transcript_id AT4G11060.1  protein_id AT4G11060.1p  transcript_id AT4G11060.1  
At4g11070	chr4:006759303	0.0	W/6759303-6759381,6759478-6759655,6759797-6759925,6760304-6760763	AT4G11070.2  CDS  gene_syn AtWRKY41, T22B4.50, T22B4_50, WRKY41  gene WRKY41  function member of WRKY Transcription Factor; Group III  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY41; transcription factor  note WRKY41; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY53; DNA binding / protein binding / transcription activator/ transcription factor (TAIR:AT4G23810.1); Has 1888 Blast hits to 1617 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1880; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT4G11070.2p  transcript_id AT4G11070.2  protein_id AT4G11070.2p  transcript_id AT4G11070.2  
At4g11070	chr4:006759303	0.0	W/6759303-6759655,6759797-6759925,6760304-6760763	AT4G11070.1  CDS  gene_syn AtWRKY41, T22B4.50, T22B4_50, WRKY41  gene WRKY41  function member of WRKY Transcription Factor; Group III  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY41; transcription factor  note WRKY41; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY53; DNA binding / protein binding / transcription activator/ transcription factor (TAIR:AT4G23810.1); Has 1887 Blast hits to 1616 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1880; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT4G11070.1p  transcript_id AT4G11070.1  protein_id AT4G11070.1p  transcript_id AT4G11070.1  
At4g11080	chr4:006762967	0.0	C/6762967-6763272,6762047-6762453,6761853-6761958,6761698-6761763,6761438-6761608,6761262-6761353,6761101-6761185,6760898-6761005	AT4G11080.1  CDS  gene_syn T22B4.60, T22B4_60  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product high mobility group (HMG1/2) family protein  note high mobility group (HMG1/2) family protein; FUNCTIONS IN: transcription factor activity; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: high mobility group (HMG1/2) family protein (TAIR:AT4G23800.1); Has 47096 Blast hits to 26150 proteins in 1347 species: Archae - 198; Bacteria - 3080; Metazoa - 24999; Fungi - 2640; Plants - 1459; Viruses - 128; Other Eukaryotes - 14592 (source: NCBI BLink).  protein_id AT4G11080.1p  transcript_id AT4G11080.1  protein_id AT4G11080.1p  transcript_id AT4G11080.1  
At4g11090	chr4:006766005	0.0	C/6766005-6766221,6765528-6765820,6764645-6765433	AT4G11090.1  CDS  gene_syn T22B4.70, T22B4_70  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23790.1); Has 693 Blast hits to 682 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 693; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G11090.1p  transcript_id AT4G11090.1  protein_id AT4G11090.1p  transcript_id AT4G11090.1  
At4g11100	chr4:006769036	0.0	W/6769036-6769588,6769666-6769976	AT4G11100.1  CDS  gene_syn T22B4.80, T22B4_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G03060.1); Has 5100 Blast hits to 3995 proteins in 395 species: Archae - 54; Bacteria - 465; Metazoa - 1838; Fungi - 350; Plants - 129; Viruses - 8; Other Eukaryotes - 2256 (source: NCBI BLink).  protein_id AT4G11100.1p  transcript_id AT4G11100.1  protein_id AT4G11100.1p  transcript_id AT4G11100.1  
At4g11100	chr4:006769036	0.0	W/6769036-6769588,6769666-6769976	AT4G11100.2  CDS  gene_syn T22B4.80, T22B4_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G03060.1); Has 5100 Blast hits to 3995 proteins in 395 species: Archae - 54; Bacteria - 465; Metazoa - 1838; Fungi - 350; Plants - 129; Viruses - 8; Other Eukaryotes - 2256 (source: NCBI BLink).  protein_id AT4G11100.2p  transcript_id AT4G11100.2  protein_id AT4G11100.2p  transcript_id AT4G11100.2  
At4g11110	chr4:006772163	0.0	W/6772163-6773629,6773966-6774123,6774499-6775267,6775368-6775514,6775685-6776002,6776097-6776156,6776484-6776675	AT4G11110.1  CDS  gene_syn SPA1-RELATED 2, SPA2, T22B4.90, T22B4_90  gene SPA2  function Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants.  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function signal transducer activity|GO:0004871||ISS  go_function protein binding|GO:0005515|16854975|IPI  product SPA2 (SPA1-RELATED 2); protein binding / signal transducer  note SPA1-RELATED 2 (SPA2); FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat (InterPro:IPR001680), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), WD40 repeat-like (InterPro:IPR011046), Protein kinase, core (InterPro:IPR000719), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: SPA1 (SUPPRESSOR OF PHYA-105 1); protein binding / signal transducer (TAIR:AT2G46340.1); Has 25228 Blast hits to 15406 proteins in 587 species: Archae - 34; Bacteria - 3693; Metazoa - 11093; Fungi - 4823; Plants - 2126; Viruses - 8; Other Eukaryotes - 3451 (source: NCBI BLink).  protein_id AT4G11110.1p  transcript_id AT4G11110.1  protein_id AT4G11110.1p  transcript_id AT4G11110.1  
At4g11120	chr4:006778066	0.0	W/6778066-6778375,6778464-6778636,6778734-6778823,6778955-6779129,6779224-6779408,6779506-6779631,6779723-6779811,6779895-6779934	AT4G11120.1  CDS  gene_syn T22B4.100, T22B4_100  go_process translational elongation|GO:0006414||IEA  go_function translation elongation factor activity|GO:0003746||IEA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process translational elongation|GO:0006414||ISS  go_function translation elongation factor activity|GO:0003746||ISS  product translation elongation factor Ts (EF-Ts), putative  note translation elongation factor Ts (EF-Ts), putative; FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Translation elongation factor Ts, conserved site (InterPro:IPR018101), Translation elongation factor EFTs/EF1B (InterPro:IPR001816), UBA-like (InterPro:IPR009060), Translation elongation factor EFTs/EF1B, dimerisation (InterPro:IPR014039); BEST Arabidopsis thaliana protein match is: emb2726 (embryo defective 2726); RNA binding / translation elongation factor (TAIR:AT4G29060.1); Has 6692 Blast hits to 6063 proteins in 1504 species: Archae - 0; Bacteria - 3293; Metazoa - 104; Fungi - 16; Plants - 114; Viruses - 0; Other Eukaryotes - 3165 (source: NCBI BLink).  protein_id AT4G11120.1p  transcript_id AT4G11120.1  protein_id AT4G11120.1p  transcript_id AT4G11120.1  
At4g11130	chr4:006780522	0.0	W/6780522-6781073,6781338-6783244,6783360-6783510,6783599-6784390	AT4G11130.1  CDS  gene_syn RDR2, RNA-DEPENDENT RNA POLYMERASE 2, SILENCING MOVEMENT DEFICIENT 1, SMD1, T22B4.110, T22B4_110  gene RDR2  function Encodes RNA-dependent RNA polymerase that is required for endogenous siRNA (but not miRNA) formation. Nomenclature according to Xie, et al. (2004).  go_component nucleolus|GO:0005730|16839878|IDA  go_process cell-cell signaling|GO:0007267|16273107|IMP  go_process response to salicylic acid stimulus|GO:0009751|15024409|IEP  go_process long-distance posttranscriptional gene silencing|GO:0010495|17785412|IMP  go_process RNA interference|GO:0016246|16273107|IMP  go_process posttranscriptional gene silencing|GO:0016441||ISS  go_process gene silencing|GO:0016458|15692015|IMP  go_process RNA interference, production of siRNA|GO:0030422|15024409|IMP  go_function RNA-directed RNA polymerase activity|GO:0003968||ISS  product RDR2 (RNA-DEPENDENT RNA POLYMERASE 2); RNA-directed RNA polymerase  note RNA-DEPENDENT RNA POLYMERASE 2 (RDR2); FUNCTIONS IN: RNA-directed RNA polymerase activity; INVOLVED IN: in 7 processes; LOCATED IN: nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA-dependent RNA polymerase, eukaryotic-type (InterPro:IPR007855); BEST Arabidopsis thaliana protein match is: RDR1 (RNA-DEPENDENT RNA POLYMERASE 1); RNA-directed RNA polymerase/ nucleic acid binding (TAIR:AT1G14790.1); Has 360 Blast hits to 350 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 59; Fungi - 159; Plants - 110; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT4G11130.1p  transcript_id AT4G11130.1  protein_id AT4G11130.1p  transcript_id AT4G11130.1  
At4g11140	chr4:006794930	0.0	C/6794930-6795793	AT4G11140.1  CDS  gene_syn CRF1, CYTOKININ RESPONSE FACTOR 1, T22B4.120, T22B4_120  gene CRF1  function encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. Also named as CRF1 (cytokinin response factor 1).  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process transcription factor import into nucleus|GO:0042991|16832061|IDA  go_process leaf development|GO:0048366|16832061|IMP  go_process cotyledon development|GO:0048825|16832061|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product CRF1 (CYTOKININ RESPONSE FACTOR 1); DNA binding / transcription factor  note CYTOKININ RESPONSE FACTOR 1 (CRF1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: cotyledon development, regulation of transcription, DNA-dependent, leaf development, transcription factor import into nucleus; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: CRF2 (CYTOKININ RESPONSE FACTOR 2); DNA binding / transcription factor (TAIR:AT4G23750.2); Has 3889 Blast hits to 3745 proteins in 200 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3868; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT4G11140.1p  transcript_id AT4G11140.1  protein_id AT4G11140.1p  transcript_id AT4G11140.1  
At4g11150	chr4:006800091	0.0	W/6800091-6800192,6800308-6800408,6800794-6800950,6801150-6801346,6801451-6801550,6801661-6801696	AT4G11150.1  CDS  gene_syn T22B4.130, T22B4_130, TUF, TUFF, VACUOLAR ATP SYNTHASE SUBUNIT E1, VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 1, VHA-E1, emb2448, embryo defective 2448  gene TUF  function Encodes a vacuolar H+-ATPase subunit E isoform 1 which is required for Golgi organization and vacuole function in embryogenesis.  go_component plant-type vacuole|GO:0000325|16618929|IDA  go_component vacuole|GO:0005773|14760709|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_component mitochondrial proton-transporting ATP synthase complex|GO:0005753||ISS  go_component vacuolar membrane|GO:0005774|16618929|IDA  go_component plant-type vacuole membrane|GO:0009705|15610355|IDA  go_process Golgi organization|GO:0007030|15610355|IMP  go_process response to cold|GO:0009409|14535880|IEP  go_process embryonic development ending in seed dormancy|GO:0009793|15610355|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process plant-type cell wall biogenesis|GO:0009832|15610355|IMP  go_process ATP synthesis coupled proton transport|GO:0015986||ISS  go_function proton-transporting ATPase activity, rotational mechanism|GO:0046961|15610355|TAS  product TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1); proton-transporting ATPase, rotational mechanism  note VACUOLAR ATP SYNTHASE SUBUNIT E1 (TUF); FUNCTIONS IN: proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: in 7 processes; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 18 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, V1/A1 complex, subunit E (InterPro:IPR002842); BEST Arabidopsis thaliana protein match is: VHA-E3 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 3); proton-transporting ATPase, rotational mechanism (TAIR:AT1G64200.1); Has 655 Blast hits to 646 proteins in 224 species: Archae - 67; Bacteria - 13; Metazoa - 243; Fungi - 98; Plants - 85; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT4G11150.1p  transcript_id AT4G11150.1  protein_id AT4G11150.1p  transcript_id AT4G11150.1  
At4g11160	chr4:006803846	0.0	W/6803846-6803878,6803957-6804089,6804183-6804252,6804360-6804717,6804784-6805266,6805357-6805929,6806011-6806157,6806292-6806726	AT4G11160.1  CDS  gene_syn T22B4.140, T22B4_140  go_component intracellular|GO:0005622||IEA  go_process translational initiation|GO:0006413||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_function translation initiation factor activity|GO:0003743||ISS  product translation initiation factor IF-2, mitochondrial, putative  note translation initiation factor IF-2, mitochondrial, putative; FUNCTIONS IN: GTP binding, GTPase activity, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation initiation factor 2 related (InterPro:IPR015760), Initiation factor 2 (InterPro:IPR000178), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: FUG1 (fu-gaeri1); translation initiation factor (TAIR:AT1G17220.1); Has 38582 Blast hits to 38565 proteins in 2706 species: Archae - 762; Bacteria - 21111; Metazoa - 1490; Fungi - 860; Plants - 513; Viruses - 0; Other Eukaryotes - 13846 (source: NCBI BLink).  protein_id AT4G11160.1p  transcript_id AT4G11160.1  protein_id AT4G11160.1p  transcript_id AT4G11160.1  
At4g11170	chr4:006811127	0.0	W/6811127-6811590,6813178-6814285,6814573-6814884,6815727-6817130	AT4G11170.1  CDS  gene_syn T22B4.150, T22B4_150  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process defense response|GO:0006952||ISS  go_process response to ozone|GO:0010193|19054359|IEP  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: response to ozone, defense response; LOCATED IN: mitochondrion; EXPRESSED IN: stem, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G49140.1); Has 12533 Blast hits to 9945 proteins in 399 species: Archae - 16; Bacteria - 576; Metazoa - 873; Fungi - 40; Plants - 10831; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink).  protein_id AT4G11170.1p  transcript_id AT4G11170.1  protein_id AT4G11170.1p  transcript_id AT4G11170.1  
At4g11175	chr4:006818162	0.0	W/6818162-6818241,6818461-6818806	AT4G11175.1  CDS  gene_syn T22B4.1, T22B4_1  go_component chloroplast|GO:0009507|18431481|IDA  go_process translational initiation|GO:0006413||IEA  go_function RNA binding|GO:0003723||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_function RNA binding|GO:0003723||ISS  product translation initiation factor IF-1, chloroplast, putative  note translation initiation factor IF-1, chloroplast, putative; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), S1, IF1 type (InterPro:IPR006196), S1, RNA binding (InterPro:IPR003029), Translation initiation factor IF-1 (InterPro:IPR004368); Has 5274 Blast hits to 5274 proteins in 1528 species: Archae - 0; Bacteria - 3140; Metazoa - 0; Fungi - 0; Plants - 318; Viruses - 0; Other Eukaryotes - 1816 (source: NCBI BLink).  protein_id AT4G11175.1p  transcript_id AT4G11175.1  protein_id AT4G11175.1p  transcript_id AT4G11175.1  
At4g11177	chr4:006819292	0.0	W/6819292-6819328	AT4G11177.1  tRNA  gene_syn 67104.TRNA-TYR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT4G11177.1  
At4g11180	chr4:006820049	0.0	W/6820049-6820606	AT4G11180.1  CDS  gene_syn T22B4.160, T22B4_160  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_process lignan biosynthetic process|GO:0009807||ISS  go_function molecular_function|GO:0003674||ND  product disease resistance-responsive family protein / dirigent family protein  note disease resistance-responsive family protein / dirigent family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lignan biosynthetic process, defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: disease resistance-responsive family protein / dirigent family protein (TAIR:AT4G11210.1); Has 361 Blast hits to 361 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 361; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G11180.1p  transcript_id AT4G11180.1  protein_id AT4G11180.1p  transcript_id AT4G11180.1  
At4g11190	chr4:006826682	0.0	W/6826682-6827236	AT4G11190.1  CDS  gene_syn T22B4.170, T22B4_170  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_process lignan biosynthetic process|GO:0009807||ISS  go_function molecular_function|GO:0003674||ND  product disease resistance-responsive family protein / dirigent family protein  note disease resistance-responsive family protein / dirigent family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lignan biosynthetic process, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: disease resistance-responsive family protein / dirigent family protein (TAIR:AT4G11210.1); Has 321 Blast hits to 321 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 321; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G11190.1p  transcript_id AT4G11190.1  protein_id AT4G11190.1p  transcript_id AT4G11190.1  
At4g11200	chr4:006827758	0.0	C/6827758-6829496	AT4G11200.1  mRNA_TE_gene  pseudo  gene_syn T22B4.180, T22B4_180  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30370.1); similar to transposon protein, putative, Mutator sub-class [Oryza sativa (japonica cultivar-group)] (GB:ABF95707.1); contains InterPro domain Plant MuDR transposase; (InterPro:IPR004332)  
At4g11210	chr4:006832691	0.0	W/6832691-6833245	AT4G11210.1  CDS  gene_syn F8L21.1  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_process lignan biosynthetic process|GO:0009807||ISS  go_function molecular_function|GO:0003674||ND  product disease resistance-responsive family protein / dirigent family protein  note disease resistance-responsive family protein / dirigent family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lignan biosynthetic process, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: leaf lamina base, petal, cauline leaf, hypocotyl, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: disease resistance-responsive family protein / dirigent family protein (TAIR:AT4G11190.1); Has 340 Blast hits to 339 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 340; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G11210.1p  transcript_id AT4G11210.1  protein_id AT4G11210.1p  transcript_id AT4G11210.1  
At4g11211	chr4:006836274	0.0	W/6836274-6836339	AT4G11211.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G11211.1p  transcript_id AT4G11211.1  protein_id AT4G11211.1p  transcript_id AT4G11211.1  
At4g11213	chr4:006837560	0.0	C/6837560-6837643	AT4G11213.1  tRNA  gene_syn 67105.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: TAA)  transcript_id AT4G11213.1  
At4g11216	chr4:006837774	0.0	C/6837774-6837857	AT4G11216.1  tRNA  gene_syn 67105.TRNA-LEU-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: CAA)  transcript_id AT4G11216.1  
At4g11220	chr4:006839326	0.0	C/6839326-6839578,6838824-6839004,6838593-6838734,6838433-6838502,6838176-6838345	AT4G11220.1  CDS  gene_syn BTI2, F8L21.10, F8L21_10, VIRB2-INTERACTING PROTEIN 2  gene BTI2  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component endoplasmic reticulum|GO:0005783||ISS  go_process biological_process|GO:0008150||ND  product BTI2 (VIRB2-INTERACTING PROTEIN 2)  note VIRB2-INTERACTING PROTEIN 2 (BTI2); INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: BTI1 (VIRB2-INTERACTING PROTEIN 1) (TAIR:AT4G23630.1); Has 982 Blast hits to 982 proteins in 97 species: Archae - 0; Bacteria - 0; Metazoa - 664; Fungi - 12; Plants - 283; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT4G11220.1p  transcript_id AT4G11220.1  protein_id AT4G11220.1p  transcript_id AT4G11220.1  
At4g11230	chr4:006844957	0.0	C/6844957-6845587,6844700-6844865,6844559-6844604,6844007-6844126,6843080-6843487,6842602-6842988,6842419-6842514,6842199-6842314,6841902-6842069,6841669-6841828,6841377-6841586,6841157-6841285,6840993-6841071,6840791-6840900	AT4G11230.1  CDS  gene_syn F8L21.20, F8L21_20  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor|GO:0050664||IEA  product respiratory burst oxidase, putative / NADPH oxidase, putative  note respiratory burst oxidase, putative / NADPH oxidase, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: oxidation reduction; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), Ferric reductase, NAD binding (InterPro:IPR013121), NADPH oxidase Respiratory burst (InterPro:IPR013623), FAD-binding 8 (InterPro:IPR013112), EF-HAND 2 (InterPro:IPR018249), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F); NAD(P)H oxidase (TAIR:AT1G64060.1); Has 1532 Blast hits to 1437 proteins in 238 species: Archae - 4; Bacteria - 141; Metazoa - 589; Fungi - 401; Plants - 263; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).  protein_id AT4G11230.1p  transcript_id AT4G11230.1  protein_id AT4G11230.1p  transcript_id AT4G11230.1  
At4g11240	chr4:006847333	0.0	W/6847333-6847510,6847983-6848542,6848719-6848931,6849015-6849032	AT4G11240.1  CDS  gene_syn F8L21.30, F8L21_30, TOPP7  gene TOPP7  function encodes a type I serine/threonine protein phosphatase expressed in expressed in roots, rosettes and flowers.  go_component cellular_component|GO:0005575||ND  go_process protein amino acid dephosphorylation|GO:0006470|9617814|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722|7773310|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722|9617814|ISS  product TOPP7; protein serine/threonine phosphatase  note TOPP7; FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: TOPP3; protein serine/threonine phosphatase (TAIR:AT1G64040.1); Has 5311 Blast hits to 5176 proteins in 351 species: Archae - 49; Bacteria - 122; Metazoa - 2077; Fungi - 932; Plants - 609; Viruses - 0; Other Eukaryotes - 1522 (source: NCBI BLink).  protein_id AT4G11240.1p  transcript_id AT4G11240.1  protein_id AT4G11240.1p  transcript_id AT4G11240.1  
At4g11250	chr4:006849578	0.0	W/6849578-6850567	AT4G11250.1  CDS  gene_syn AGL52, F8L21.40, F8L21_40  gene AGL52  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL52; transcription factor  note AGL52; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL78 (AGAMOUS-LIKE 78); transcription factor (TAIR:AT5G65330.1); Has 389 Blast hits to 384 proteins in 97 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 287; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT4G11250.1p  transcript_id AT4G11250.1  protein_id AT4G11250.1p  transcript_id AT4G11250.1  
At4g11260	chr4:006853560	0.0	C/6853560-6853719,6853163-6853232,6852933-6853057,6852698-6852824,6852523-6852619,6852339-6852404,6852121-6852259,6851916-6851995,6851725-6851829,6851515-6851622	AT4G11260.1  CDS  gene_syn ATSGT1B, EDM1, ENHANCED DOWNY MILDEW 1, ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ETA3, F8L21.50, F8L21_50, RPR1, SGT1B  gene SGT1B  function Functions in plant disease resistance signaling, SCF(TIR1) mediated degradation of Aux/IAA proteins and HSP90 mediated degradation of R resistance proteins. AtSGT1a and AtSGT1b are functionally redundant in the resistance to pathogenes. AtSGT1b was more highly expressed than AtSGT1. The N-terminal TPR domain of AtSGT1a reduces the steady-state level of Arabidopsis SGT1 proteins whereas the same domain from AtSGT1b enhances SGT1 accumulation. The TPR domain is dispensable for SGT1 resistance.  go_component SCF ubiquitin ligase complex|GO:0019005|12782725|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|12782725|IMP  go_process auxin mediated signaling pathway|GO:0009734|12782725|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|16619029|IGI  go_process jasmonic acid mediated signaling pathway|GO:0009867|12782725|IMP  go_process protein catabolic process|GO:0030163|15976272|IMP  go_process defense response to fungus|GO:0050832|11847308|IMP  go_function protein binding|GO:0005515|11847307|IPI  product SGT1B; protein binding  note SGT1B; FUNCTIONS IN: protein binding; INVOLVED IN: in 6 processes; LOCATED IN: SCF ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), SGS (InterPro:IPR007699), HSP20-like chaperone (InterPro:IPR008978), CS (InterPro:IPR017447), CS domain (InterPro:IPR007052), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: SGT1A; protein binding (TAIR:AT4G23570.2); Has 7147 Blast hits to 5320 proteins in 417 species: Archae - 174; Bacteria - 1770; Metazoa - 2083; Fungi - 729; Plants - 682; Viruses - 0; Other Eukaryotes - 1709 (source: NCBI BLink).  protein_id AT4G11260.1p  transcript_id AT4G11260.1  protein_id AT4G11260.1p  transcript_id AT4G11260.1  
At4g11270	chr4:006854461	0.0	W/6854461-6857145,6857234-6857337,6857439-6857508,6857616-6858419,6858544-6858746,6858826-6858949,6859062-6859268,6859347-6859490	AT4G11270.1  CDS  gene_syn F8L21.60, F8L21_60  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); Has 2796 Blast hits to 2122 proteins in 213 species: Archae - 0; Bacteria - 517; Metazoa - 1103; Fungi - 733; Plants - 103; Viruses - 0; Other Eukaryotes - 340 (source: NCBI BLink).  protein_id AT4G11270.1p  transcript_id AT4G11270.1  protein_id AT4G11270.1p  transcript_id AT4G11270.1  
At4g11280	chr4:006864168	0.0	W/6864168-6864347,6864437-6864568,6864663-6864823,6864908-6865922	AT4G11280.1  CDS  gene_syn 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID (ACC) SYNTHASE 6, ACS6, F8L21.70, F8L21_70  gene ACS6  function encodes a a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family  go_component cellular_component|GO:0005575||ND  go_process induction of apoptosis by oxidative stress|GO:0008631|10444084|IEP  go_process response to external stimulus|GO:0009605|10080689|IEP  go_process response to wounding|GO:0009611|16021335|IEP  go_process response to mechanical stimulus|GO:0009612|10080689|IEP  go_process ethylene biosynthetic process|GO:0009693|10080689|TAS  go_process ethylene biosynthetic process|GO:0009693|16311726|TAS  go_process response to ethylene stimulus|GO:0009723|10080689|IEP  go_process response to auxin stimulus|GO:0009733|10080689|IEP  go_process response to auxin stimulus|GO:0009733|12972669|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16021335|IEP  go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847|10080689|ISS  go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847|12968022|IDA  product ACS6 (1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID (ACC) SYNTHASE 6); 1-aminocyclopropane-1-carboxylate synthase  note 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID (ACC) SYNTHASE 6 (ACS6); FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate synthase activity; INVOLVED IN: in 8 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase, class I and II (InterPro:IPR004839), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: ACS1 (ACC SYNTHASE 1); 1-aminocyclopropane-1-carboxylate synthase (TAIR:AT3G61510.1); Has 19632 Blast hits to 19628 proteins in 1684 species: Archae - 549; Bacteria - 11693; Metazoa - 534; Fungi - 487; Plants - 908; Viruses - 0; Other Eukaryotes - 5461 (source: NCBI BLink).  protein_id AT4G11280.1p  transcript_id AT4G11280.1  protein_id AT4G11280.1p  transcript_id AT4G11280.1  
At4g11290	chr4:006869993	0.0	W/6869993-6870202,6870447-6870641,6870724-6870886,6871064-6871476	AT4G11290.1  CDS  gene_syn F8L21.80, F8L21_80  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: RCI3 (RARE COLD INDUCIBLE GENE 3); peroxidase (TAIR:AT1G05260.1); Has 2887 Blast hits to 2873 proteins in 200 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 57; Plants - 2796; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT4G11290.1p  transcript_id AT4G11290.1  protein_id AT4G11290.1p  transcript_id AT4G11290.1  
At4g11300	chr4:006872345	0.0	C/6872345-6873460	AT4G11300.1  CDS  gene_syn F8L21.90, F8L21_90  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF793 (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23530.1); Has 104 Blast hits to 98 proteins in 22 species: Archae - 0; Bacteria - 8; Metazoa - 8; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT4G11300.1p  transcript_id AT4G11300.1  protein_id AT4G11300.1p  transcript_id AT4G11300.1  
At4g11310	chr4:006883594	0.0	W/6883594-6884068,6884521-6884756,6884839-6884979,6885076-6885318	AT4G11310.1  CDS  gene_syn F8L21.100, F8L21_100  function cysteine proteinase precursor-like protein  go_component cell wall|GO:0005618|15593128|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product cysteine proteinase, putative  note cysteine proteinase, putative; FUNCTIONS IN: cysteine-type peptidase activity, cysteine-type endopeptidase activity; INVOLVED IN: proteolysis, N-terminal protein myristoylation; LOCATED IN: cell wall; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: cysteine proteinase, putative (TAIR:AT4G11320.1); Has 6029 Blast hits to 5983 proteins in 565 species: Archae - 21; Bacteria - 83; Metazoa - 2820; Fungi - 4; Plants - 1222; Viruses - 116; Other Eukaryotes - 1763 (source: NCBI BLink).  protein_id AT4G11310.1p  transcript_id AT4G11310.1  protein_id AT4G11310.1p  transcript_id AT4G11310.1  
At4g11320	chr4:006887336	0.0	W/6887336-6887831,6887971-6888206,6888348-6888488,6888585-6888827	AT4G11320.1  CDS  gene_syn F8L21.110, F8L21_110  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product cysteine proteinase, putative  note cysteine proteinase, putative; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: cysteine proteinase, putative (TAIR:AT4G11310.1); Has 6022 Blast hits to 5981 proteins in 566 species: Archae - 21; Bacteria - 81; Metazoa - 2840; Fungi - 4; Plants - 1220; Viruses - 118; Other Eukaryotes - 1738 (source: NCBI BLink).  protein_id AT4G11320.1p  transcript_id AT4G11320.1  protein_id AT4G11320.1p  transcript_id AT4G11320.1  
At4g11330	chr4:006892143	0.0	W/6892143-6892315,6892570-6892699,6892770-6892907,6892984-6893316,6893413-6893596,6893673-6893845	AT4G11330.1  CDS  gene_syn ATMPK5, F8L21.120, F8L21_120, MAP KINASE 5  gene ATMPK5  function MAP kinase  go_component cellular_component|GO:0005575||ND  go_process signal transduction|GO:0007165|12119167|IC  go_function MAP kinase activity|GO:0004707|12119167|ISS  go_function MAP kinase activity|GO:0004707|8282107|ISS  go_function kinase activity|GO:0016301||ISS  product ATMPK5 (MAP KINASE 5); MAP kinase/ kinase  note MAP KINASE 5 (ATMPK5); FUNCTIONS IN: MAP kinase activity, kinase activity; INVOLVED IN: signal transduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), JNK MAP kinase (InterPro:IPR008351), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4); MAP kinase/ kinase (TAIR:AT4G01370.1); Has 85010 Blast hits to 84162 proteins in 2881 species: Archae - 43; Bacteria - 6207; Metazoa - 37788; Fungi - 7934; Plants - 16407; Viruses - 437; Other Eukaryotes - 16194 (source: NCBI BLink).  protein_id AT4G11330.1p  transcript_id AT4G11330.1  protein_id AT4G11330.1p  transcript_id AT4G11330.1  
At4g11340	chr4:006898713	0.0	C/6898713-6899130,6897427-6897571,6897205-6897272,6895717-6896239,6894639-6894711,6894208-6894468	AT4G11340.1  CDS  gene_syn F8L21.130, F8L21_130  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_process defense response|GO:0006952||ISS  product Toll-Interleukin-Resistance (TIR) domain-containing protein  note Toll-Interleukin-Resistance (TIR) domain-containing protein; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: transmembrane receptor (TAIR:AT5G45000.1); Has 866 Blast hits to 795 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 854; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G11340.1p  transcript_id AT4G11340.1  protein_id AT4G11340.1p  transcript_id AT4G11340.1  
At4g11350	chr4:006901714	0.0	W/6901714-6902589,6903433-6903975,6904056-6904160	AT4G11350.1  CDS  gene_syn F8L21.140, F8L21_140  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product transferase, transferring glycosyl groups  note transferase, transferring glycosyl groups; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, sepal, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: fringe-related protein (TAIR:AT4G23490.1); Has 365 Blast hits to 361 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 128; Plants - 136; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT4G11350.1p  transcript_id AT4G11350.1  protein_id AT4G11350.1p  transcript_id AT4G11350.1  
At4g11350	chr4:006901714	0.0	W/6901714-6902664	AT4G11350.2  CDS  gene_syn F8L21.140, F8L21_140  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product transferase, transferring glycosyl groups  note transferase, transferring glycosyl groups; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, sepal, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: fringe-related protein (TAIR:AT4G23490.1); Has 347 Blast hits to 346 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 122; Plants - 123; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT4G11350.2p  transcript_id AT4G11350.2  protein_id AT4G11350.2p  transcript_id AT4G11350.2  
At4g11355	chr4:006905485	0.0	C/6905485-6905557	AT4G11355.1  tRNA  gene_syn 67105.TRNA-ALA-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: AGC)  transcript_id AT4G11355.1  
At4g11360	chr4:006906066	0.0	W/6906066-6906539	AT4G11360.1  CDS  gene_syn F8L21.150, F8L21_150, RHA1B, RING-H2 FINGER PROTEIN RHA1B  gene RHA1B  function Encodes a putative RING-H2 finger protein RHA1b.  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process response to chitin|GO:0010200|17722694|IEP  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product RHA1B; protein binding / zinc ion binding  note RHA1B; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: response to cadmium ion, response to chitin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: RHA1A; protein binding / zinc ion binding (TAIR:AT4G11370.1); Has 5094 Blast hits to 5080 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 1667; Fungi - 398; Plants - 2250; Viruses - 17; Other Eukaryotes - 762 (source: NCBI BLink).  protein_id AT4G11360.1p  transcript_id AT4G11360.1  protein_id AT4G11360.1p  transcript_id AT4G11360.1  
At4g11370	chr4:006907777	0.0	W/6907777-6908256	AT4G11370.1  CDS  gene_syn F8L21.160, F8L21_160, RHA1A, RING-H2 FINGER PROTEIN RHA1A  gene RHA1A  function Encodes a putative RING-H2 finger protein RHA1a.  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product RHA1A; protein binding / zinc ion binding  note RHA1A; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: RHA1B; protein binding / zinc ion binding (TAIR:AT4G11360.1); Has 4885 Blast hits to 4870 proteins in 195 species: Archae - 0; Bacteria - 0; Metazoa - 1557; Fungi - 344; Plants - 2230; Viruses - 10; Other Eukaryotes - 744 (source: NCBI BLink).  protein_id AT4G11370.1p  transcript_id AT4G11370.1  protein_id AT4G11370.1p  transcript_id AT4G11370.1  
At4g11375	chr4:006914885	0.0	C/6914885-6919316	AT4G11375.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 5.3e-183 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)  
At4g11380	chr4:006920608	0.0	W/6920608-6920694,6921162-6921359,6921477-6921590,6921716-6921966,6922281-6922416,6922566-6922745,6922842-6922934,6923021-6923232,6923320-6923383,6923481-6923660,6923757-6923849,6924003-6924385,6924504-6924693,6924775-6924978,6925145-6925444	AT4G11380.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process intracellular protein transport|GO:0006886||IEA  go_process protein transport|GO:0015031||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function protein transporter activity|GO:0008565||IEA  go_function clathrin binding|GO:0030276||ISS  product beta-adaptin, putative  note beta-adaptin, putative; FUNCTIONS IN: protein transporter activity, protein binding, clathrin binding, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain (InterPro:IPR008152), Armadillo-like helical (InterPro:IPR011989), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553), Clathrin adaptor, beta-adaptin, appendage, Ig-like subdomain (InterPro:IPR013037), Clathrin adaptor, beta-adaptin, appendage, C-terminal subdomain (InterPro:IPR015151), Beta2-adaptin/TATA-box binding, C-terminal (InterPro:IPR012295), Armadillo-type fold (InterPro:IPR016024), Adaptor protein complex, beta subunit (InterPro:IPR016342), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028), Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain (InterPro:IPR013041); BEST Arabidopsis thaliana protein match is: beta-adaptin, putative (TAIR:AT4G23460.1); Has 2658 Blast hits to 2594 proteins in 201 species: Archae - 6; Bacteria - 21; Metazoa - 1263; Fungi - 569; Plants - 229; Viruses - 0; Other Eukaryotes - 570 (source: NCBI BLink).  protein_id AT4G11380.1p  transcript_id AT4G11380.1  protein_id AT4G11380.1p  transcript_id AT4G11380.1  
At4g11385	chr4:006927547	0.0	C/6927547-6927678,6927327-6927435,6927087-6927277	AT4G11385.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 3861 Blast hits to 437 proteins in 44 species: Archae - 0; Bacteria - 5; Metazoa - 3007; Fungi - 254; Plants - 315; Viruses - 6; Other Eukaryotes - 274 (source: NCBI BLink).  protein_id AT4G11385.1p  transcript_id AT4G11385.1  protein_id AT4G11385.1p  transcript_id AT4G11385.1  
At4g11390	chr4:006927892	0.0	W/6927892-6929199,6929643-6929705,6929833-6929898,6930271-6930378	AT4G11390.1  CDS  gene_syn F25E4.10, F25E4_10  go_process intracellular signaling cascade|GO:0007242||IEA  product DC1 domain-containing protein  note DC1 domain-containing protein; INVOLVED IN: intracellular signaling cascade; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT4G11550.1); Has 885 Blast hits to 430 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 883; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G11390.1p  transcript_id AT4G11390.1  protein_id AT4G11390.1p  transcript_id AT4G11390.1  
At4g11393	chr4:006932370	0.0	W/6932370-6932436,6932549-6932718	AT4G11393.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05727.1); Has 13 Blast hits to 13 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G11393.1p  transcript_id AT4G11393.1  protein_id AT4G11393.1p  transcript_id AT4G11393.1  
At4g11400	chr4:006938717	0.0	W/6938717-6939574,6939676-6940539	AT4G11400.1  CDS  gene_syn F25E4.20, F25E4_20  go_component vacuole|GO:0005773|14760709|IDA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product ARID/BRIGHT DNA-binding domain-containing protein / ELM2 domain-containing protein / Myb-like DNA-binding domain-containing protein  note ARID/BRIGHT DNA-binding domain-containing protein / ELM2 domain-containing protein / Myb-like DNA-binding domain-containing protein; FUNCTIONS IN: DNA binding; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), ELM2 (InterPro:IPR000949), AT-rich interaction region (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: ARID/BRIGHT DNA-binding domain-containing protein / ELM2 domain-containing protein (TAIR:AT2G46040.1); Has 156 Blast hits to 147 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 76; Fungi - 2; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G11400.1p  transcript_id AT4G11400.1  protein_id AT4G11400.1p  transcript_id AT4G11400.1  
At4g11405	chr4:006944727	0.0	W/6944727-6944798	AT4G11405.1  tRNA  gene_syn 67106.TRNA-THR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Thr (anticodon: TGT)  transcript_id AT4G11405.1  
At4g11410	chr4:006947081	0.0	C/6947081-6947186,6946602-6946833,6946424-6946503,6946138-6946291,6945966-6946044,6945782-6945866,6945405-6945451,6945127-6945297	AT4G11410.1  CDS  gene_syn F25E4.30, F25E4_30  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT4G23430.2); Has 27195 Blast hits to 27150 proteins in 1597 species: Archae - 170; Bacteria - 14735; Metazoa - 2987; Fungi - 1834; Plants - 789; Viruses - 0; Other Eukaryotes - 6680 (source: NCBI BLink).  protein_id AT4G11410.1p  transcript_id AT4G11410.1  protein_id AT4G11410.1p  transcript_id AT4G11410.1  
At4g11420	chr4:006952008	0.0	C/6952008-6952053,6951420-6951901,6951116-6951331,6950614-6950982,6950496-6950525,6950179-6950406,6949902-6950063,6949564-6949785,6949267-6949473,6948979-6949185,6948809-6948889,6948451-6948652,6947834-6948345	AT4G11420.1  CDS  gene_syn ATEIF3A-1, ATTIF3A1, EIF3A, EIF3A-1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3A, F25E4.40, F25E4_40, TIF3A1  gene EIF3A  function Encodes a subunit of eukaryotic initiation factor 3 (eIF3), a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilization of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component eukaryotic translation initiation factor 3 complex|GO:0005852|11042177|ISS  go_process translational initiation|GO:0006413|11042177|TAS  go_function translation initiation factor activity|GO:0003743|11042177|ISS  go_function translation initiation factor activity|GO:0003743||ISS  product EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A); translation initiation factor  note EUKARYOTIC TRANSLATION INITIATION FACTOR 3A (EIF3A); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: eukaryotic translation initiation factor 3 complex, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component region PCI (InterPro:IPR000717); Has 128361 Blast hits to 60987 proteins in 2045 species: Archae - 837; Bacteria - 14014; Metazoa - 65127; Fungi - 8610; Plants - 3574; Viruses - 436; Other Eukaryotes - 35763 (source: NCBI BLink).  protein_id AT4G11420.1p  transcript_id AT4G11420.1  protein_id AT4G11420.1p  transcript_id AT4G11420.1  
At4g11430	chr4:006952799	0.0	W/6952799-6952828,6953613-6954242	AT4G11430.1  CDS  gene_syn F25E4.50, F25E4_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 54861 Blast hits to 27597 proteins in 1062 species: Archae - 164; Bacteria - 6191; Metazoa - 23241; Fungi - 7869; Plants - 9100; Viruses - 1865; Other Eukaryotes - 6431 (source: NCBI BLink).  protein_id AT4G11430.1p  transcript_id AT4G11430.1  protein_id AT4G11430.1p  transcript_id AT4G11430.1  
At4g11440	chr4:006955850	0.0	W/6955850-6956975,6957077-6957195,6957284-6957408,6957600-6957699,6957834-6957920,6958057-6958140,6958208-6958293,6958394-6958553	AT4G11440.1  CDS  gene_syn F25E4.60, F25E4_60  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function binding|GO:0005488||ISS  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: shoot apex, embryo, seed; EXPRESSED DURING: D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: SAMC1 (S-ADENOSYLMETHIONINE CARRIER 1); S-adenosylmethionine transmembrane transporter/ binding (TAIR:AT4G39460.1); Has 19661 Blast hits to 10258 proteins in 352 species: Archae - 0; Bacteria - 0; Metazoa - 9757; Fungi - 5517; Plants - 2554; Viruses - 0; Other Eukaryotes - 1833 (source: NCBI BLink).  protein_id AT4G11440.1p  transcript_id AT4G11440.1  protein_id AT4G11440.1p  transcript_id AT4G11440.1  
At4g11450	chr4:006959475	0.0	C/6959475-6961223,6959065-6959400	AT4G11450.1  CDS  gene_syn F25E4.70, F25E4_70  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63520.1); Has 71 Blast hits to 70 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G11450.1p  transcript_id AT4G11450.1  protein_id AT4G11450.1p  transcript_id AT4G11450.1  
At4g11460	chr4:006964468	0.0	W/6964468-6965296,6965382-6965516,6965620-6965741,6965838-6966057,6966127-6966364,6966461-6966614,6966689-6967093	AT4G11460.1  CDS  gene_syn F25E4.80, F25E4_80  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT4G23260.1); Has 88018 Blast hits to 87038 proteins in 3335 species: Archae - 41; Bacteria - 7796; Metazoa - 38470; Fungi - 7109; Plants - 19365; Viruses - 412; Other Eukaryotes - 14825 (source: NCBI BLink).  protein_id AT4G11460.1p  transcript_id AT4G11460.1  protein_id AT4G11460.1p  transcript_id AT4G11460.1  
At4g11470	chr4:006967729	0.0	W/6967729-6968671,6968765-6968886,6968971-6969181,6969254-6969491,6969586-6969739,6969829-6970161	AT4G11470.1  CDS  gene_syn F25E4.90, F25E4_90  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function protein kinase activity|GO:0004672||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G11480.1); Has 87429 Blast hits to 86184 proteins in 3120 species: Archae - 35; Bacteria - 7633; Metazoa - 38381; Fungi - 6871; Plants - 19195; Viruses - 401; Other Eukaryotes - 14913 (source: NCBI BLink).  protein_id AT4G11470.1p  transcript_id AT4G11470.1  protein_id AT4G11470.1p  transcript_id AT4G11470.1  
At4g11480	chr4:006971408	0.0	W/6971408-6972296,6972377-6972498,6972637-6972871,6972925-6973162,6973233-6973386,6973467-6973799	AT4G11480.1  CDS  gene_syn F25E4.100, F25E4_100  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G11470.1); Has 86732 Blast hits to 85560 proteins in 3250 species: Archae - 38; Bacteria - 7471; Metazoa - 38280; Fungi - 6747; Plants - 19053; Viruses - 383; Other Eukaryotes - 14760 (source: NCBI BLink).  protein_id AT4G11480.1p  transcript_id AT4G11480.1  protein_id AT4G11480.1p  transcript_id AT4G11480.1  
At4g11485	chr4:006975885	0.0	C/6975885-6975945,6975282-6975529	AT4G11485.1  CDS  gene_syn LCR11, Low-molecular-weight cysteine-rich 11  gene LCR11  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR11 (Low-molecular-weight cysteine-rich 11)  note Low-molecular-weight cysteine-rich 11 (LCR11); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); BEST Arabidopsis thaliana protein match is: LCR17 (Low-molecular-weight cysteine-rich 17) (TAIR:AT4G11760.1); Has 17 Blast hits to 17 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G11485.1p  transcript_id AT4G11485.1  protein_id AT4G11485.1p  transcript_id AT4G11485.1  
At4g11490	chr4:006978848	0.0	W/6978848-6979619,6979776-6979901,6980186-6980298,6980368-6980578,6980669-6980906,6981006-6981159,6981252-6981548	AT4G11490.1  CDS  gene_syn F25E4.110, F25E4_110  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: kinase (TAIR:AT4G11530.1); Has 87320 Blast hits to 86209 proteins in 3099 species: Archae - 37; Bacteria - 7795; Metazoa - 38168; Fungi - 6848; Plants - 19396; Viruses - 381; Other Eukaryotes - 14695 (source: NCBI BLink).  protein_id AT4G11490.1p  transcript_id AT4G11490.1  protein_id AT4G11490.1p  transcript_id AT4G11490.1  
At4g11500	chr4:006982597	0.0	W/6982597-6983619	AT4G11500.1  pseudogenic_transcript  pseudo  gene_syn F25E4.1  note pseudogene, similar to putative receptor-like serine-threonine protein kinase, blastp match of 59% identity and 6.5e-66 P-value to GP|18076583|emb|CAC84552.1||AJ306626 putative receptor-like serine-threonine protein kinase {Solanum tuberosum}  
At4g11510	chr4:006984051	0.0	C/6984051-6984308	AT4G11510.1  CDS  gene_syn F25E4.130, F25E4_130, RALFL28, ralf-like 28  gene RALFL28  function Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  go_component apoplast|GO:0048046|12611624|ISS  go_process cell-cell signaling|GO:0007267|12611624|ISS  go_function signal transducer activity|GO:0004871|12611624|TAS  product RALFL28 (ralf-like 28); signal transducer  note ralf-like 28 (RALFL28); FUNCTIONS IN: signal transducer activity; INVOLVED IN: cell-cell signaling; LOCATED IN: apoplast; EXPRESSED IN: embryo, sepal; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALFL21 (RALF-LIKE 21); signal transducer (TAIR:AT3G04735.1); Has 17 Blast hits to 17 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G11510.1p  transcript_id AT4G11510.1  protein_id AT4G11510.1p  transcript_id AT4G11510.1  
At4g11521	chr4:006985622	0.0	W/6985622-6986419	AT4G11521.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: kinase (TAIR:AT4G11530.1).  protein_id AT4G11521.1p  transcript_id AT4G11521.1  protein_id AT4G11521.1p  transcript_id AT4G11521.1  
At4g11530	chr4:006987093	0.0	W/6987093-6987945,6988046-6988153,6988252-6988373,6988443-6988653,6988734-6988971,6989043-6989196,6989276-6989599	AT4G11530.1  CDS  gene_syn F25E4.150, F25E4_150  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product kinase  note kinase; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: CRK11 (CYSTEINE-RICH RLK11); kinase/ protein kinase (TAIR:AT4G23190.1); Has 88461 Blast hits to 86278 proteins in 3142 species: Archae - 51; Bacteria - 7886; Metazoa - 38114; Fungi - 6902; Plants - 20408; Viruses - 404; Other Eukaryotes - 14696 (source: NCBI BLink).  protein_id AT4G11530.1p  transcript_id AT4G11530.1  protein_id AT4G11530.1p  transcript_id AT4G11530.1  
At4g11540	chr4:006990978	0.0	C/6990978-6992555	AT4G11540.1  CDS  gene_syn F25E4.160, F25E4_160  go_component endomembrane system|GO:0012505||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  product DC1 domain-containing protein  note DC1 domain-containing protein; INVOLVED IN: intracellular signaling cascade; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT4G11550.1); Has 1248 Blast hits to 464 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1245; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G11540.1p  transcript_id AT4G11540.1  protein_id AT4G11540.1p  transcript_id AT4G11540.1  
At4g11550	chr4:006996823	0.0	C/6996823-6998829	AT4G11550.1  CDS  gene_syn F25E4.170, F25E4_170  go_process intracellular signaling cascade|GO:0007242||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular signaling cascade; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, pedicel, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT4G01760.1); Has 1561 Blast hits to 629 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 136; Fungi - 0; Plants - 1409; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT4G11550.1p  transcript_id AT4G11550.1  protein_id AT4G11550.1p  transcript_id AT4G11550.1  
At4g11560	chr4:007003047	0.0	C/7003047-7003445,7002396-7002458,7001590-7002309,7001300-7001431,7000930-7001013,7000669-7000728,7000477-7000563,7000095-7000313	AT4G11560.1  CDS  gene_syn F25E4.180, F25E4_180  go_process transcription|GO:0006350||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_function DNA binding|GO:0003677||ISS  product bromo-adjacent homology (BAH) domain-containing protein  note bromo-adjacent homology (BAH) domain-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Bromo adjacent region (InterPro:IPR001025), Transcription elongation factor S-II, central region (InterPro:IPR003618); BEST Arabidopsis thaliana protein match is: bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT2G25120.1); Has 9324 Blast hits to 4203 proteins in 278 species: Archae - 12; Bacteria - 137; Metazoa - 5768; Fungi - 608; Plants - 451; Viruses - 226; Other Eukaryotes - 2122 (source: NCBI BLink).  protein_id AT4G11560.1p  transcript_id AT4G11560.1  protein_id AT4G11560.1p  transcript_id AT4G11560.1  
At4g11570	chr4:007004743	0.0	W/7004743-7005864	AT4G11570.1  CDS  gene_syn F25E4.190, F25E4_190  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity|GO:0016787||ISS  product haloacid dehalogenase-like hydrolase family protein  note haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834); BEST Arabidopsis thaliana protein match is: haloacid dehalogenase-like hydrolase family protein (TAIR:AT3G10970.1); Has 5376 Blast hits to 5376 proteins in 1041 species: Archae - 50; Bacteria - 4358; Metazoa - 59; Fungi - 19; Plants - 177; Viruses - 0; Other Eukaryotes - 713 (source: NCBI BLink).  protein_id AT4G11570.1p  transcript_id AT4G11570.1  protein_id AT4G11570.1p  transcript_id AT4G11570.1  
At4g11570	chr4:007004743	0.0	W/7004743-7005864	AT4G11570.2  CDS  gene_syn F25E4.190, F25E4_190  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity|GO:0016787||ISS  product haloacid dehalogenase-like hydrolase family protein  note haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834); BEST Arabidopsis thaliana protein match is: haloacid dehalogenase-like hydrolase family protein (TAIR:AT3G10970.1); Has 5376 Blast hits to 5376 proteins in 1041 species: Archae - 50; Bacteria - 4358; Metazoa - 59; Fungi - 19; Plants - 177; Viruses - 0; Other Eukaryotes - 713 (source: NCBI BLink).  protein_id AT4G11570.2p  transcript_id AT4G11570.2  protein_id AT4G11570.2p  transcript_id AT4G11570.2  
At4g11580	chr4:007007275	0.0	C/7007275-7007738,7006648-7007185	AT4G11580.1  CDS  gene_syn T5C23.10, T5C23_10  go_component cellular_component|GO:0005575||ND  product F-box family protein  note F-box family protein; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G48880.2); Has 106 Blast hits to 106 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G11580.1p  transcript_id AT4G11580.1  protein_id AT4G11580.1p  transcript_id AT4G11580.1  
At4g11590	chr4:007008603	0.0	W/7008603-7009796	AT4G11590.1  CDS  gene_syn T5C23.20, T5C23_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G15660.1); Has 612 Blast hits to 598 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 612; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G11590.1p  transcript_id AT4G11590.1  protein_id AT4G11590.1p  transcript_id AT4G11590.1  
At4g11600	chr4:007011094	0.0	C/7011094-7011330,7010876-7010952,7010724-7010785,7010511-7010629,7010154-7010321,7010021-7010056	AT4G11600.1  CDS  gene_syn ATGPX6, GLUTATHIONE PEROXIDASE 6, LSC803, PHGPX, T5C23.30, T5C23_30  gene ATGPX6  function Encodes glutathione peroxidase.  go_component mitochondrion|GO:0005739|15276431|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component mitochondrion|GO:0005739|14617062|TAS  go_component cytosol|GO:0005829|14617062|TAS  go_process response to oxidative stress|GO:0006979|9511228|IEP  go_process response to metal ion|GO:0010038|9511228|IEP  go_function glutathione peroxidase activity|GO:0004602|9511228|ISS  go_function glutathione peroxidase activity|GO:0004602||ISS  product ATGPX6 (GLUTATHIONE PEROXIDASE 6); glutathione peroxidase  note GLUTATHIONE PEROXIDASE 6 (ATGPX6); FUNCTIONS IN: glutathione peroxidase activity; INVOLVED IN: response to oxidative stress, response to cadmium ion, response to salt stress, response to metal ion; LOCATED IN: cytosol, mitochondrion, chloroplast, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336), Glutathione peroxidase (InterPro:IPR000889); BEST Arabidopsis thaliana protein match is: ATGPX7 (glutathione peroxidase 7); glutathione peroxidase (TAIR:AT4G31870.1); Has 5441 Blast hits to 5440 proteins in 1020 species: Archae - 0; Bacteria - 1956; Metazoa - 683; Fungi - 136; Plants - 239; Viruses - 8; Other Eukaryotes - 2419 (source: NCBI BLink).  protein_id AT4G11600.1p  transcript_id AT4G11600.1  protein_id AT4G11600.1p  transcript_id AT4G11600.1  
At4g11610	chr4:007017378	0.0	C/7017378-7017846,7016523-7016965,7016054-7016443,7015433-7015764,7013956-7015357	AT4G11610.1  CDS  gene_syn T5C23.40, T5C23_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal, plant (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT4G00700.1); Has 3695 Blast hits to 2591 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 2517; Fungi - 147; Plants - 781; Viruses - 0; Other Eukaryotes - 250 (source: NCBI BLink).  protein_id AT4G11610.1p  transcript_id AT4G11610.1  protein_id AT4G11610.1p  transcript_id AT4G11610.1  
At4g11630	chr4:007019793	0.0	W/7019793-7020002,7020304-7020444,7020512-7020598,7020694-7020827,7020963-7021068	AT4G11630.1  CDS  gene_syn T5C23.60, T5C23_60  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L19 family protein  note ribosomal protein L19 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein L19 (InterPro:IPR001857); BEST Arabidopsis thaliana protein match is: ribosomal protein L19 family protein (TAIR:AT5G11750.1); Has 5377 Blast hits to 5377 proteins in 1490 species: Archae - 0; Bacteria - 2923; Metazoa - 94; Fungi - 42; Plants - 95; Viruses - 0; Other Eukaryotes - 2223 (source: NCBI BLink).  protein_id AT4G11630.1p  transcript_id AT4G11630.1  protein_id AT4G11630.1p  transcript_id AT4G11630.1  
At4g11640	chr4:007021770	0.0	W/7021770-7021933,7022045-7022131,7022259-7022489,7022626-7022886,7023000-7023252	AT4G11640.1  CDS  gene_syn ARABIDOPSIS THALIANA SERINE RACEMASE, ATSR, T5C23.70, T5C23_70  gene ATSR  function Serine racemase, which is a bifunctional PLP-dependent enzyme catalyzing racemization of serine and dehydration of serine to pyruvate in the same way as mammalian serine racemases. similar to mammalian serine racemases.  go_process serine family amino acid metabolic process|GO:0009069|16483618|IDA  go_process serine family amino acid metabolic process|GO:0009069||ISS  go_function serine racemase activity|GO:0030378|16483618|IDA  go_function serine racemase activity|GO:0030378|16483618|ISS  go_function serine racemase activity|GO:0030378||ISS  product ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE); serine racemase  note ARABIDOPSIS THALIANA SERINE RACEMASE (ATSR); FUNCTIONS IN: serine racemase activity; INVOLVED IN: serine family amino acid metabolic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Serine/threonine dehydratase, pyridoxal-phosphate-binding site (InterPro:IPR000634); BEST Arabidopsis thaliana protein match is: OMR1 (L-O-METHYLTHREONINE RESISTANT 1); L-threonine ammonia-lyase (TAIR:AT3G10050.1); Has 12362 Blast hits to 12355 proteins in 1438 species: Archae - 290; Bacteria - 7009; Metazoa - 494; Fungi - 439; Plants - 98; Viruses - 0; Other Eukaryotes - 4032 (source: NCBI BLink).  protein_id AT4G11640.1p  transcript_id AT4G11640.1  protein_id AT4G11640.1p  transcript_id AT4G11640.1  
At4g11642	chr4:007023453	0.0	C/7023453-7023806	AT4G11642.1  pseudogenic_transcript  pseudo  function pseudogene of ATOSM34 (osmotin-like protein)  
At4g11650	chr4:007025719	0.0	C/7025719-7026113,7025127-7025466	AT4G11650.1  CDS  gene_syn ATOSM34, T5C23.80, T5C23_80, osmotin 34  gene ATOSM34  function osmotin-like protein  go_component endomembrane system|GO:0012505||IEA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process defense response to bacterium, incompatible interaction|GO:0009816|9210588|ISS  go_process response to other organism|GO:0051707||ISS  product ATOSM34 (osmotin 34)  note osmotin 34 (ATOSM34); INVOLVED IN: response to salt stress, response to other organism, defense response to bacterium, incompatible interaction; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75050.1); Has 1077 Blast hits to 1057 proteins in 148 species: Archae - 0; Bacteria - 22; Metazoa - 45; Fungi - 56; Plants - 944; Viruses - 3; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT4G11650.1p  transcript_id AT4G11650.1  protein_id AT4G11650.1p  transcript_id AT4G11650.1  
At4g11653	chr4:007037086	0.0	C/7037086-7037358	AT4G11653.1  CDS  gene_syn RALF-LIKE 29, RALFL29  gene RALFL29  function Rapid alkalinization factor (RALF) family protein. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  go_component apoplast|GO:0048046|12611624|ISS  go_process cell-cell signaling|GO:0007267|12611624|ISS  go_function signal transducer activity|GO:0004871|12611624|TAS  product RALFL29 (RALF-LIKE 29); signal transducer  note RALF-LIKE 29 (RALFL29); FUNCTIONS IN: signal transducer activity; INVOLVED IN: cell-cell signaling; LOCATED IN: apoplast; BEST Arabidopsis thaliana protein match is: RALFL5 (RALF-LIKE 5); signal transducer (TAIR:AT1G35467.1); Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G11653.1p  transcript_id AT4G11653.1  protein_id AT4G11653.1p  transcript_id AT4G11653.1  
At4g11655	chr4:007038590	0.0	W/7038590-7038888,7039311-7039446,7039568-7039759	AT4G11655.1  CDS  go_component membrane|GO:0016020|11152613|ISS  product transmembrane protein, putative  note transmembrane protein, putative; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36330.1); Has 75 Blast hits to 75 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G11655.1p  transcript_id AT4G11655.1  protein_id AT4G11655.1p  transcript_id AT4G11655.1  
At4g11660	chr4:007043006	0.0	W/7043006-7043359,7043448-7044227	AT4G11660.1  CDS  gene_syn AT-HSFB2B, HEAT SHOCK TRANSCRIPTION FACTOR B2B, HSFB2B, T5C23.90, T5C23_90  gene AT-HSFB2B  function member of Heat Stress Transcription Factor (Hsf) family  go_component nucleus|GO:0005634||IEA  go_process response to chitin|GO:0010200|17722694|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription repressor activity|GO:0016564|19324928|IDA  product AT-HSFB2B; transcription factor/ transcription repressor  note AT-HSFB2B; FUNCTIONS IN: transcription repressor activity, transcription factor activity; INVOLVED IN: response to chitin; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: AT-HSFB2A; DNA binding / transcription factor (TAIR:AT5G62020.1); Has 30258 Blast hits to 9599 proteins in 758 species: Archae - 35; Bacteria - 9372; Metazoa - 8618; Fungi - 1528; Plants - 6235; Viruses - 570; Other Eukaryotes - 3900 (source: NCBI BLink).  protein_id AT4G11660.1p  transcript_id AT4G11660.1  protein_id AT4G11660.1p  transcript_id AT4G11660.1  
At4g11670	chr4:007052800	0.0	C/7052800-7052971,7052475-7052539,7051856-7052111,7051662-7051728,7051422-7051554,7051087-7051254,7050605-7050703,7050286-7050495,7050106-7050207,7049441-7049671,7049088-7049165,7048653-7048739,7048351-7048536,7048108-7048263,7047883-7047975,7047504-7047575,7047158-7047275,7046645-7046817,7046464-7046548,7046223-7046357,7045910-7045961,7045541-7045634,7045353-7045448,7045003-7045098,7044732-7044906,7044401-7044555	AT4G11670.1  CDS  gene_syn T5C23.100, T5C23_100  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Munc13 homology 1 (InterPro:IPR014770), Protein of unknown function DUF810 (InterPro:IPR008528), Munc13 homology 2 (InterPro:IPR014772); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06970.1); Has 147 Blast hits to 87 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 138; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G11670.1p  transcript_id AT4G11670.1  protein_id AT4G11670.1p  transcript_id AT4G11670.1  
At4g11680	chr4:007054918	0.0	C/7054918-7055516,7054480-7054602,7054258-7054390,7053989-7054141,7053737-7053901	AT4G11680.1  CDS  gene_syn T5C23.110, T5C23_110  go_component plasma membrane|GO:0005886|17151019|IDA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G63170.1); Has 6313 Blast hits to 6295 proteins in 208 species: Archae - 0; Bacteria - 6; Metazoa - 2195; Fungi - 451; Plants - 2639; Viruses - 29; Other Eukaryotes - 993 (source: NCBI BLink).  protein_id AT4G11680.1p  transcript_id AT4G11680.1  protein_id AT4G11680.1p  transcript_id AT4G11680.1  
At4g11690	chr4:007056254	0.0	W/7056254-7057954	AT4G11690.1  CDS  gene_syn T5C23.120, T5C23_120  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: EMB2745 (EMBRYO DEFECTIVE 2745) (TAIR:AT5G39710.1); Has 24979 Blast hits to 6191 proteins in 190 species: Archae - 5; Bacteria - 14; Metazoa - 1046; Fungi - 680; Plants - 21958; Viruses - 0; Other Eukaryotes - 1276 (source: NCBI BLink).  protein_id AT4G11690.1p  transcript_id AT4G11690.1  protein_id AT4G11690.1p  transcript_id AT4G11690.1  
At4g11700	chr4:007058086	0.0	C/7058086-7058637	AT4G11700.1  CDS  gene_syn T5C23.130, T5C23_130  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57210.1); Has 52 Blast hits to 51 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G11700.1p  transcript_id AT4G11700.1  protein_id AT4G11700.1p  transcript_id AT4G11700.1  
At4g11710	chr4:007061149	0.0	C/7061149-7062792	AT4G11710.1  mRNA_TE_gene  pseudo  gene_syn T5C23.140, T5C23_140  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G13655.1); similar to putative AP endonuclease/reverse transcriptase [Brassica napus] (GB:AAM82604.1); contains domain Bacterial photosystem II reaction centre, L and M subunits (SSF81483); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446)  
At4g11720	chr4:007063291	0.0	W/7063291-7063473,7063576-7063719,7063798-7063886,7064080-7064177,7064257-7064317,7064392-7064470,7064551-7064685,7064757-7064954,7065029-7065109,7065196-7065296,7065365-7065482,7065557-7065589,7065664-7065757,7065844-7065932,7066016-7066134,7066211-7066311,7066390-7066784	AT4G11720.1  CDS  gene_syn GCS1, GENERATIVE CELL-SPECIFIC 1, HAP2, HAPLESS 2, T5C23.150, T5C23_150  gene HAP2  function Encodes HAP2 with the following predicted motifs: an N-terminal secretion signal, a single transmembrane domain and a C-terminal histidine-rich domain. HAP2 is expressed only in the haploid sperm and is required for pollen tube guidance and fertilization. Predominantly localized to sperm endoplasmic reticulum membranes. May also reside in other endomembranes, including the plasma membrane.  go_component endoplasmic reticulum|GO:0005783|17079265|IDA  go_component plasma membrane|GO:0005886|17079265|IDA  go_process double fertilization forming a zygote and endosperm|GO:0009567|17079265|IMP  go_process pollen tube guidance|GO:0010183|17079265|IMP  product HAP2 (HAPLESS 2)  note HAPLESS 2 (HAP2); INVOLVED IN: pollen tube guidance, double fertilization forming a zygote and endosperm; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Generative cell specific-1, HAP2-GCS1 (InterPro:IPR018928); Has 1904 Blast hits to 1340 proteins in 241 species: Archae - 6; Bacteria - 370; Metazoa - 760; Fungi - 83; Plants - 100; Viruses - 5; Other Eukaryotes - 580 (source: NCBI BLink).  protein_id AT4G11720.1p  transcript_id AT4G11720.1  protein_id AT4G11720.1p  transcript_id AT4G11720.1  
At4g11730	chr4:007067035	0.0	W/7067035-7067088,7067649-7067771,7067858-7068082,7068346-7069110,7069187-7069300,7069386-7069778,7069856-7069888,7069973-7070054,7070138-7070301,7070390-7070563,7070654-7070968	AT4G11730.1  CDS  gene_syn T5C23.160, T5C23_160  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process ATP biosynthetic process|GO:0006754||IEA  go_process cation transport|GO:0006812||IEA  go_process metabolic process|GO:0008152||IEA  go_function ATPase activity|GO:0016887||ISS  product ATPase, plasma membrane-type, putative / proton pump, putative  note ATPase, plasma membrane-type, putative / proton pump, putative; FUNCTIONS IN: ATPase activity; INVOLVED IN: cation transport, metabolic process, ATP biosynthetic process; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type cation exchange, alpha subunit (InterPro:IPR006069), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type, plasma-membrane proton-efflux (InterPro:IPR006534), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: AHA3; ATPase/ hydrogen-exporting ATPase, phosphorylative mechanism (TAIR:AT5G57350.1); Has 25023 Blast hits to 17934 proteins in 1813 species: Archae - 536; Bacteria - 13979; Metazoa - 4201; Fungi - 2067; Plants - 1409; Viruses - 6; Other Eukaryotes - 2825 (source: NCBI BLink).  protein_id AT4G11730.1p  transcript_id AT4G11730.1  protein_id AT4G11730.1p  transcript_id AT4G11730.1  
At4g11740	chr4:007071955	0.0	W/7071955-7072038,7072423-7072484,7072577-7073075,7073162-7073248,7073322-7073437,7073583-7073778,7073896-7074072,7074167-7074331,7074595-7074738,7074825-7074881,7075149-7075256	AT4G11740.1  CDS  gene_syn SAY1, T5C23.170, T5C23_170  gene SAY1  function Isolated as a suppressor of a dominant mutant in the Ara4 gene that was expressed in yeast ypt1 mutant strains. A novel protein with a small region of similarity to coil-coiled domain of yeast VSP27 protein.  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process vesicle-mediated transport|GO:0016192|10758485|TAS  product SAY1  note SAY1; INVOLVED IN: vesicle-mediated transport; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012), Ubiquitin interacting motif (InterPro:IPR003903), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: UBX domain-containing protein (TAIR:AT4G23040.1); Has 6363 Blast hits to 3732 proteins in 400 species: Archae - 3; Bacteria - 508; Metazoa - 3372; Fungi - 688; Plants - 249; Viruses - 49; Other Eukaryotes - 1494 (source: NCBI BLink).  protein_id AT4G11740.1p  transcript_id AT4G11740.1  protein_id AT4G11740.1p  transcript_id AT4G11740.1  
At4g11745	chr4:007075826	0.0	C/7075826-7076680	AT4G11745.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing protein  note kelch repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Kelch repeat type 1 (InterPro:IPR006652), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 2 (InterPro:IPR011498), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G11770.1); Has 726 Blast hits to 699 proteins in 66 species: Archae - 4; Bacteria - 16; Metazoa - 321; Fungi - 0; Plants - 366; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT4G11745.1p  transcript_id AT4G11745.1  protein_id AT4G11745.1p  transcript_id AT4G11745.1  
At4g11750	chr4:007077390	0.0	C/7077390-7078550	AT4G11750.1  CDS  gene_syn T5C23.180, T5C23_180  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G11770.1); Has 904 Blast hits to 831 proteins in 73 species: Archae - 0; Bacteria - 13; Metazoa - 304; Fungi - 0; Plants - 576; Viruses - 4; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT4G11750.1p  transcript_id AT4G11750.1  protein_id AT4G11750.1p  transcript_id AT4G11750.1  
At4g11760	chr4:007079326	0.0	W/7079326-7079386,7079905-7080134	AT4G11760.1  CDS  gene_syn LCR17, Low-molecular-weight cysteine-rich 17, T5C23.190, T5C23_190  gene LCR17  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||IEA  go_function molecular_function|GO:0003674||ND  product LCR17 (Low-molecular-weight cysteine-rich 17)  note Low-molecular-weight cysteine-rich 17 (LCR17); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: LCR11 (Low-molecular-weight cysteine-rich 11) (TAIR:AT4G11485.1); Has 19 Blast hits to 19 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G11760.1p  transcript_id AT4G11760.1  protein_id AT4G11760.1p  transcript_id AT4G11760.1  
At4g11770	chr4:007082279	0.0	C/7082279-7083469	AT4G11770.1  CDS  gene_syn T5C23.200, T5C23_200  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G11750.1); Has 4226 Blast hits to 2626 proteins in 168 species: Archae - 4; Bacteria - 124; Metazoa - 3229; Fungi - 16; Plants - 577; Viruses - 118; Other Eukaryotes - 158 (source: NCBI BLink).  protein_id AT4G11770.1p  transcript_id AT4G11770.1  protein_id AT4G11770.1p  transcript_id AT4G11770.1  
At4g11780	chr4:007085970	0.0	W/7085970-7086794,7087516-7087615,7087716-7088212	AT4G11780.1  CDS  gene_syn T5C23.210, T5C23_210  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23020.1); Has 583 Blast hits to 347 proteins in 77 species: Archae - 0; Bacteria - 26; Metazoa - 218; Fungi - 107; Plants - 44; Viruses - 0; Other Eukaryotes - 188 (source: NCBI BLink).  protein_id AT4G11780.1p  transcript_id AT4G11780.1  protein_id AT4G11780.1p  transcript_id AT4G11780.1  
At4g11790	chr4:007090456	0.0	W/7090456-7090503,7091043-7091197,7091331-7091418,7091582-7092146,7092264-7092317,7092502-7092599,7092730-7092852,7092929-7093018,7093098-7093208	AT4G11790.1  CDS  gene_syn T26M18.3  go_process intracellular transport|GO:0046907||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein  note Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ran Binding Protein 1 (InterPro:IPR000156), Pleckstrin homology-type (InterPro:IPR011993); Has 12389 Blast hits to 3068 proteins in 333 species: Archae - 13; Bacteria - 1442; Metazoa - 2775; Fungi - 1337; Plants - 178; Viruses - 16; Other Eukaryotes - 6628 (source: NCBI BLink).  protein_id AT4G11790.1p  transcript_id AT4G11790.1  protein_id AT4G11790.1p  transcript_id AT4G11790.1  
At4g11800	chr4:007098227	0.0	C/7098227-7098519,7097916-7098141,7097557-7097805,7097355-7097470,7097126-7097224,7096924-7097011,7096584-7096813,7096279-7096502,7096017-7096216,7095414-7095746,7095230-7095331,7094734-7095031,7094396-7094547,7094028-7094312,7093666-7093854	AT4G11800.1  CDS  gene_syn T26M18.10, T26M18_10  go_function hydrolase activity|GO:0016787||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product hydrolase/ protein serine/threonine phosphatase  note hydrolase/ protein serine/threonine phosphatase; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: hydrolase/ protein serine/threonine phosphatase (TAIR:AT4G23000.1); Has 119 Blast hits to 84 proteins in 31 species: Archae - 0; Bacteria - 70; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT4G11800.1p  transcript_id AT4G11800.1  protein_id AT4G11800.1p  transcript_id AT4G11800.1  
At4g11810	chr4:007105446	0.0	W/7105446-7105498,7105586-7105706,7105788-7106099,7106179-7106283,7106546-7107015,7107090-7107391,7107446-7107642,7107706-7107896,7107975-7108108,7108212-7108450	AT4G11810.1  CDS  gene_syn T26M18.20, T26M18_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SPX (SYG1/Pho81/XPR1) domain-containing protein  note SPX (SYG1/Pho81/XPR1) domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SPX, N-terminal (InterPro:IPR004331), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: SPX (SYG1/Pho81/XPR1) domain-containing protein (TAIR:AT4G22990.1); Has 1600 Blast hits to 1599 proteins in 559 species: Archae - 31; Bacteria - 880; Metazoa - 139; Fungi - 219; Plants - 146; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink).  protein_id AT4G11810.1p  transcript_id AT4G11810.1  protein_id AT4G11810.1p  transcript_id AT4G11810.1  
At4g11820	chr4:007111209	0.0	C/7111209-7111213,7110965-7111097,7110739-7110882,7110491-7110649,7110336-7110409,7110184-7110259,7110049-7110104,7109878-7109965,7109656-7109796,7109411-7109560,7109124-7109318	AT4G11820.1  CDS  gene_syn EMB2778, EMBRYO DEFECTIVE 2778, HMG-COA SYNTHASE, HMGS, HYDROXYMETHYLGLUTARYL-COA SYNTHASE, MVA1, T26M18.30, T26M18_30  gene MVA1  function Encodes a protein with hydroxymethylglutaryl-CoA synthase activity which was characterized by phenotypical complementation of the S. cerevisiae mutant.  go_component cellular_component|GO:0005575||ND  go_process isopentenyl diphosphate biosynthetic process, mevalonate pathway|GO:0019287|12777052|TAS  go_function acetyl-CoA C-acetyltransferase activity|GO:0003985|8566777|IGI  go_function hydroxymethylglutaryl-CoA synthase activity|GO:0004421|8566777|IGI  go_function hydroxymethylglutaryl-CoA synthase activity|GO:0004421|8566777|ISS  product MVA1; acetyl-CoA C-acetyltransferase/ hydroxymethylglutaryl-CoA synthase  note HYDROXYMETHYLGLUTARYL-COA SYNTHASE (HMGS); FUNCTIONS IN: hydroxymethylglutaryl-CoA synthase activity, acetyl-CoA C-acetyltransferase activity; INVOLVED IN: isopentenyl diphosphate biosynthetic process, mevalonate pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Hydroxymethylglutaryl-coenzyme A synthase C-terminal (InterPro:IPR013746), Thiolase-like (InterPro:IPR016039), Hydroxymethylglutaryl-coenzyme A synthase, N-terminal (InterPro:IPR013528), Hydroxymethylglutaryl-CoA synthase, eukaryotic (InterPro:IPR010122), Hydroxymethylglutaryl-coenzyme A synthase, active site (InterPro:IPR000590); Has 1267 Blast hits to 1266 proteins in 464 species: Archae - 139; Bacteria - 470; Metazoa - 202; Fungi - 115; Plants - 78; Viruses - 0; Other Eukaryotes - 263 (source: NCBI BLink).  protein_id AT4G11820.1p  transcript_id AT4G11820.1  protein_id AT4G11820.1p  transcript_id AT4G11820.1  
At4g11820	chr4:007111839	0.0	C/7111839-7111901,7111209-7111315,7110965-7111097,7110739-7110882,7110491-7110649,7110336-7110409,7110184-7110259,7110049-7110104,7109878-7109965,7109656-7109796,7109411-7109560,7109124-7109318	AT4G11820.2  CDS  gene_syn EMB2778, EMBRYO DEFECTIVE 2778, HMG-COA SYNTHASE, HMGS, HYDROXYMETHYLGLUTARYL-COA SYNTHASE, MVA1, T26M18.30, T26M18_30  gene MVA1  function Encodes a protein with hydroxymethylglutaryl-CoA synthase activity which was characterized by phenotypical complementation of the S. cerevisiae mutant.  go_component cellular_component|GO:0005575||ND  go_process isopentenyl diphosphate biosynthetic process, mevalonate pathway|GO:0019287|12777052|TAS  go_function acetyl-CoA C-acetyltransferase activity|GO:0003985|8566777|IGI  go_function hydroxymethylglutaryl-CoA synthase activity|GO:0004421|8566777|IGI  go_function hydroxymethylglutaryl-CoA synthase activity|GO:0004421|8566777|ISS  product MVA1; acetyl-CoA C-acetyltransferase/ hydroxymethylglutaryl-CoA synthase  note MVA1; FUNCTIONS IN: hydroxymethylglutaryl-CoA synthase activity, acetyl-CoA C-acetyltransferase activity; INVOLVED IN: isopentenyl diphosphate biosynthetic process, mevalonate pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Hydroxymethylglutaryl-coenzyme A synthase C-terminal (InterPro:IPR013746), Hydroxymethylglutaryl-coenzyme A synthase, N-terminal (InterPro:IPR013528), Hydroxymethylglutaryl-CoA synthase, eukaryotic (InterPro:IPR010122), Hydroxymethylglutaryl-coenzyme A synthase, active site (InterPro:IPR000590); Has 1297 Blast hits to 1296 proteins in 466 species: Archae - 143; Bacteria - 471; Metazoa - 202; Fungi - 115; Plants - 78; Viruses - 0; Other Eukaryotes - 288 (source: NCBI BLink).  protein_id AT4G11820.2p  transcript_id AT4G11820.2  protein_id AT4G11820.2p  transcript_id AT4G11820.2  
At4g11830	chr4:007118727	0.0	C/7118727-7119683,7118199-7118315,7117914-7118108,7117579-7117824,7117417-7117485,7117196-7117343,7116967-7117115,7116691-7116888,7116407-7116604,7115985-7116278	AT4G11830.2  CDS  gene_syn AT4G11835, PLDGAMMA2, T26M18.40, T26M18_40  gene PLDGAMMA2  function Encodes one of three phospholipase D enzymes of the gamma class.  go_component chloroplast|GO:0009507|15028209|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process phospholipid catabolic process|GO:0009395||TAS  go_function phospholipase D activity|GO:0004630||ISS  product PLDGAMMA2; phospholipase D  note PLDGAMMA2; FUNCTIONS IN: phospholipase D activity; INVOLVED IN: phospholipid catabolic process; LOCATED IN: cytosolic ribosome, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phospholipase D (InterPro:IPR015679), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), C2 calcium-dependent membrane targeting (InterPro:IPR000008), Phospholipase D, plant (InterPro:IPR011402); BEST Arabidopsis thaliana protein match is: PLDGAMMA3; phospholipase D (TAIR:AT4G11840.1); Has 1382 Blast hits to 1053 proteins in 277 species: Archae - 0; Bacteria - 351; Metazoa - 325; Fungi - 294; Plants - 318; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).  protein_id AT4G11830.2p  transcript_id AT4G11830.2  protein_id AT4G11830.2p  transcript_id AT4G11830.2  
At4g11830	chr4:007119578	0.0	C/7119578-7119683,7118727-7119481,7118199-7118315,7117914-7118108,7117579-7117824,7117417-7117485,7117196-7117343,7116967-7117115,7116691-7116888,7116407-7116604,7115985-7116278	AT4G11830.1  CDS  gene_syn AT4G11835, PLDGAMMA2, T26M18.40, T26M18_40  gene PLDGAMMA2  function Encodes one of three phospholipase D enzymes of the gamma class.  go_component chloroplast|GO:0009507|15028209|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process phospholipid catabolic process|GO:0009395||TAS  go_function phospholipase D activity|GO:0004630||ISS  product PLDGAMMA2; phospholipase D  note PLDGAMMA2; FUNCTIONS IN: phospholipase D activity; INVOLVED IN: phospholipid catabolic process; LOCATED IN: cytosolic ribosome, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phospholipase D (InterPro:IPR015679), Phospholipase D, plant (InterPro:IPR011402), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: PLDGAMMA3; phospholipase D (TAIR:AT4G11840.1); Has 1484 Blast hits to 1152 proteins in 282 species: Archae - 0; Bacteria - 351; Metazoa - 393; Fungi - 302; Plants - 327; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).  protein_id AT4G11830.1p  transcript_id AT4G11830.1  protein_id AT4G11830.1p  transcript_id AT4G11830.1  
At4g11840	chr4:007124899	0.0	C/7124899-7125882,7124381-7124497,7124096-7124290,7123757-7124005,7123594-7123662,7123366-7123513,7123137-7123285,7122859-7123056,7122574-7122771,7122152-7122445	AT4G11840.1  CDS  gene_syn PLDGAMMA3, T26M18.50, T26M18_50  gene PLDGAMMA3  function member of C2-PLD subfamily  go_component membrane|GO:0016020||IEA  go_process metabolic process|GO:0008152||IEA  go_process phosphatidylcholine metabolic process|GO:0046470||IEA  go_function phospholipase D activity|GO:0004630||ISS  product PLDGAMMA3; phospholipase D  note PLDGAMMA3; FUNCTIONS IN: phospholipase D activity; INVOLVED IN: phosphatidylcholine metabolic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phospholipase D (InterPro:IPR015679), Phospholipase D, plant (InterPro:IPR011402), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: PLDGAMMA2; phospholipase D (TAIR:AT4G11830.2); Has 1429 Blast hits to 1106 proteins in 277 species: Archae - 0; Bacteria - 348; Metazoa - 353; Fungi - 303; Plants - 323; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).  protein_id AT4G11840.1p  transcript_id AT4G11840.1  protein_id AT4G11840.1p  transcript_id AT4G11840.1  
At4g11845	chr4:007127959	0.0	C/7127959-7128072,7127524-7127632,7127340-7127425,7127051-7127136,7126894-7126960	AT4G11845.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G54030.1); Has 105 Blast hits to 105 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G11845.1p  transcript_id AT4G11845.1  protein_id AT4G11845.1p  transcript_id AT4G11845.1  
At4g11850	chr4:007131975	0.0	C/7131975-7132937,7131581-7131697,7131297-7131491,7130959-7131207,7130784-7130852,7130561-7130708,7130334-7130482,7130059-7130253,7129774-7129971,7129352-7129645	AT4G11850.1  CDS  gene_syn MEE54, PLDGAMMA1, maternal effect embryo arrest 54  gene PLDGAMMA1  function phospholipase D (gamma)  go_component plasma membrane|GO:0005886|16618929|IDA  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process defense response to bacterium, incompatible interaction|GO:0009816|12182338|IGI  go_function phospholipase D activity|GO:0004630|9353280|IDA  go_function phospholipase D activity|GO:0004630||ISS  product PLDGAMMA1; phospholipase D  note PLDGAMMA1; FUNCTIONS IN: phospholipase D activity; INVOLVED IN: embryonic development ending in seed dormancy, defense response to bacterium, incompatible interaction; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phospholipase D (InterPro:IPR015679), Phospholipase D, plant (InterPro:IPR011402), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: PLDGAMMA3; phospholipase D (TAIR:AT4G11840.1); Has 1413 Blast hits to 1103 proteins in 281 species: Archae - 0; Bacteria - 348; Metazoa - 358; Fungi - 297; Plants - 311; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).  protein_id AT4G11850.1p  transcript_id AT4G11850.1  protein_id AT4G11850.1p  transcript_id AT4G11850.1  
At4g11860	chr4:007138163	0.0	C/7138163-7138361,7137693-7137811,7137497-7137603,7137328-7137415,7136284-7136989,7135898-7136128,7135682-7135736,7135511-7135592,7135344-7135424,7135097-7135210,7134953-7135002,7134698-7134818,7134237-7134332	AT4G11860.1  CDS  gene_syn T26M18.70, T26M18_70  go_component plasma membrane|GO:0005886|17317660|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF544 (InterPro:IPR007518), Ubiquitin interacting motif (InterPro:IPR003903); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22960.1); Has 761 Blast hits to 466 proteins in 133 species: Archae - 0; Bacteria - 44; Metazoa - 311; Fungi - 246; Plants - 57; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).  protein_id AT4G11860.1p  transcript_id AT4G11860.1  protein_id AT4G11860.1p  transcript_id AT4G11860.1  
At4g11870	chr4:007140495	0.0	C/7140495-7140719	AT4G11870.1  CDS  gene_syn T26M18.80, T26M18_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 93 Blast hits to 88 proteins in 33 species: Archae - 2; Bacteria - 24; Metazoa - 14; Fungi - 20; Plants - 2; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT4G11870.1p  transcript_id AT4G11870.1  protein_id AT4G11870.1p  transcript_id AT4G11870.1  
At4g11876	chr4:007142303	0.0	W/7142303-7142434	AT4G11876.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G11876.1p  transcript_id AT4G11876.1  protein_id AT4G11876.1p  transcript_id AT4G11876.1  
At4g11880	chr4:007143512	0.0	W/7143512-7143696,7145637-7145715,7146007-7146068,7146172-7146271,7146637-7146678,7146792-7146833,7146953-7147108	AT4G11880.1  CDS  gene_syn AGL14, T26M18.90, T26M18_90, agamous-like 14  gene AGL14  function AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL14 (agamous-like 14); DNA binding / transcription factor  note agamous-like 14 (AGL14); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGL19 (AGAMOUS-LIKE 19); transcription factor (TAIR:AT4G22950.1); Has 5257 Blast hits to 5252 proteins in 691 species: Archae - 0; Bacteria - 0; Metazoa - 555; Fungi - 212; Plants - 4424; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT4G11880.1p  transcript_id AT4G11880.1  protein_id AT4G11880.1p  transcript_id AT4G11880.1  
At4g11890	chr4:007148269	0.0	W/7148269-7148338,7148430-7148527,7148615-7148825,7148917-7149154,7149248-7149386,7149464-7149772	AT4G11890.3  CDS  gene_syn T26M18.100, T26M18_100  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: EMB1290 (EMBRYO DEFECTIVE 1290); kinase/ protein kinase (TAIR:AT4G23250.1); Has 81128 Blast hits to 80225 proteins in 2849 species: Archae - 41; Bacteria - 7578; Metazoa - 35431; Fungi - 6301; Plants - 18130; Viruses - 259; Other Eukaryotes - 13388 (source: NCBI BLink).  protein_id AT4G11890.3p  transcript_id AT4G11890.3  protein_id AT4G11890.3p  transcript_id AT4G11890.3  
At4g11890	chr4:007148269	0.0	W/7148269-7148338,7148436-7148527,7148615-7148825,7148917-7149154,7149248-7149386,7149464-7149772	AT4G11890.2  CDS  gene_syn T26M18.100, T26M18_100  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: EMB1290 (EMBRYO DEFECTIVE 1290); kinase/ protein kinase (TAIR:AT4G23250.1); Has 81134 Blast hits to 80255 proteins in 2849 species: Archae - 41; Bacteria - 7578; Metazoa - 35409; Fungi - 6312; Plants - 18142; Viruses - 259; Other Eukaryotes - 13393 (source: NCBI BLink).  protein_id AT4G11890.2p  transcript_id AT4G11890.2  protein_id AT4G11890.2p  transcript_id AT4G11890.2  
At4g11890	chr4:007148269	0.0	W/7148269-7148338,7148439-7148527,7148615-7148825,7148917-7149154,7149248-7149386,7149464-7149772	AT4G11890.1  CDS  gene_syn T26M18.100, T26M18_100  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: EMB1290 (EMBRYO DEFECTIVE 1290); kinase/ protein kinase (TAIR:AT4G23250.1); Has 81187 Blast hits to 80309 proteins in 2849 species: Archae - 41; Bacteria - 7576; Metazoa - 35429; Fungi - 6317; Plants - 18150; Viruses - 259; Other Eukaryotes - 13415 (source: NCBI BLink).  protein_id AT4G11890.1p  transcript_id AT4G11890.1  protein_id AT4G11890.1p  transcript_id AT4G11890.1  
At4g11890	chr4:007148478	0.0	W/7148478-7148527,7148620-7148825,7148917-7149154,7149248-7149386,7149464-7149772	AT4G11890.4  CDS  gene_syn T26M18.100, T26M18_100  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G04510.1); Has 73404 Blast hits to 72625 proteins in 1994 species: Archae - 33; Bacteria - 7095; Metazoa - 31164; Fungi - 5556; Plants - 17245; Viruses - 231; Other Eukaryotes - 12080 (source: NCBI BLink).  protein_id AT4G11890.4p  transcript_id AT4G11890.4  protein_id AT4G11890.4p  transcript_id AT4G11890.4  
At4g11900	chr4:007152174	0.0	C/7152174-7153542,7151973-7152107,7151741-7151895,7151407-7151617,7151060-7151297,7150630-7150780,7150241-7150531	AT4G11900.1  CDS  gene_syn T26M18.110, T26M18_110  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product S-locus lectin protein kinase family protein  note S-locus lectin protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-like, type 2 (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: SD1-29 (S-DOMAIN-1 29); carbohydrate binding / kinase/ protein kinase (TAIR:AT1G61380.1); Has 19651 Blast hits to 19358 proteins in 910 species: Archae - 0; Bacteria - 89; Metazoa - 5831; Fungi - 263; Plants - 12424; Viruses - 88; Other Eukaryotes - 956 (source: NCBI BLink).  protein_id AT4G11900.1p  transcript_id AT4G11900.1  protein_id AT4G11900.1p  transcript_id AT4G11900.1  
At4g11910	chr4:007156435	0.0	W/7156435-7156563,7156830-7157003,7157091-7157258,7157495-7157839	AT4G11910.1  CDS  gene_syn T26M18.120, T26M18_120  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: NYE1 (NON-YELLOWING 1) (TAIR:AT4G22920.1); Has 130 Blast hits to 128 proteins in 45 species: Archae - 0; Bacteria - 50; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G11910.1p  transcript_id AT4G11910.1  protein_id AT4G11910.1p  transcript_id AT4G11910.1  
At4g11911	chr4:007158150	0.0	W/7158150-7158278,7158398-7158571,7158681-7158848,7159090-7159440	AT4G11911.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: NYE1 (NON-YELLOWING 1) (TAIR:AT4G22920.1); Has 130 Blast hits to 128 proteins in 45 species: Archae - 0; Bacteria - 50; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G11911.1p  transcript_id AT4G11911.1  protein_id AT4G11911.1p  transcript_id AT4G11911.1  
At4g11920	chr4:007162784	0.0	C/7162784-7163257,7162337-7162459,7162137-7162241,7161562-7161804,7161289-7161483,7161104-7161205,7160960-7161022,7160782-7160850,7160618-7160671	AT4G11920.1  CDS  gene_syn CCS52A2, FIZZY-RELATED 1, FZR1, T26M18.130, T26M18_130  gene CCS52A2  function Encodes a putative activator of the anaphase-promoting complex/cyclosome. Promotes exit from the cell cycle and entry into the endocycle leading to endoreduplication.  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_process signal transduction|GO:0007165||ISS  go_process positive regulation of DNA endoreduplication|GO:0032877|18787127|IMP  go_function signal transducer activity|GO:0004871||ISS  product CCS52A2; signal transducer  note CCS52A2; FUNCTIONS IN: signal transducer activity; INVOLVED IN: signal transduction, positive regulation of DNA endoreduplication; LOCATED IN: heterotrimeric G-protein complex; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: FZR2 (FIZZY-RELATED 2); signal transducer (TAIR:AT4G22910.1); Has 34019 Blast hits to 17689 proteins in 529 species: Archae - 48; Bacteria - 4687; Metazoa - 15146; Fungi - 6786; Plants - 2971; Viruses - 0; Other Eukaryotes - 4381 (source: NCBI BLink).  protein_id AT4G11920.1p  transcript_id AT4G11920.1  protein_id AT4G11920.1p  transcript_id AT4G11920.1  
At4g11930	chr4:007164904	0.0	W/7164904-7165722	AT4G11930.1  CDS  gene_syn T26M18.140, T26M18_140  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11940.1); Has 44 Blast hits to 44 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G11930.1p  transcript_id AT4G11930.1  protein_id AT4G11930.1p  transcript_id AT4G11930.1  
At4g11940	chr4:007168173	0.0	W/7168173-7168967	AT4G11940.1  CDS  gene_syn F16J13.10, F16J13_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11930.1); Has 23 Blast hits to 23 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G11940.1p  transcript_id AT4G11940.1  protein_id AT4G11940.1p  transcript_id AT4G11940.1  
At4g11945	chr4:007169974	0.0	C/7169974-7170174	AT4G11945.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to transposases  
At4g11950	chr4:007173276	0.0	C/7173276-7174259	AT4G11950.1  CDS  gene_syn F16J13.20, F16J13_20  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1191 (InterPro:IPR010605); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22900.1); Has 60 Blast hits to 60 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G11950.1p  transcript_id AT4G11950.1  protein_id AT4G11950.1p  transcript_id AT4G11950.1  
At4g11960	chr4:007177544	0.0	C/7177544-7177709,7176933-7177045,7176749-7176845,7176560-7176660,7176399-7176455,7176196-7176272,7176043-7176094,7175826-7175936,7175495-7175592,7175340-7175409	AT4G11960.1  CDS  gene_syn F16J13.30, F16J13_30, PGR5-Like B, PGRL1B  gene PGRL1B  function Encodes PGRL1B, a transmembrane protein present in thylakoids. PGRL1B has a highly homologous isoform PGRL1A encoded by At4g22890. Plants lacking PGRL1 show perturbation of cyclic electron flow, similar to PGR5-deficient plants. PGRL1 and PGR5 interact physically and associate with PSI (photosystem I).  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process photosynthetic electron transport in photosystem I|GO:0009773|18243102|IGI  go_process photosynthesis|GO:0015979|18243102|IGI  go_function molecular_function|GO:0003674||ND  product PGRL1B (PGR5-Like B)  note PGR5-Like B (PGRL1B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthetic electron transport in photosystem I, photosynthesis; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PGR5-LIKE A (TAIR:AT4G22890.3); Has 62 Blast hits to 62 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G11960.1p  transcript_id AT4G11960.1  protein_id AT4G11960.1p  transcript_id AT4G11960.1  
At4g11970	chr4:007181223	0.0	W/7181223-7181313,7181406-7181641,7181734-7181985,7182127-7182203,7182275-7182596,7182946-7183006,7183225-7183265	AT4G11970.2  CDS  gene_syn F16J13.40, F16J13_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product YT521-B-like family protein  note YT521-B-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: YT521-B-like protein (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: CPSF30; RNA binding / calmodulin binding / endonuclease/ nucleic acid binding / protein binding (TAIR:AT1G30460.1); Has 746 Blast hits to 703 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 344; Fungi - 142; Plants - 181; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT4G11970.2p  transcript_id AT4G11970.2  protein_id AT4G11970.2p  transcript_id AT4G11970.2  
At4g11970	chr4:007181223	0.0	W/7181223-7181313,7181406-7181641,7181734-7181985,7182127-7182203,7182275-7182953	AT4G11970.1  CDS  gene_syn F16J13.40, F16J13_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product YT521-B-like family protein  note YT521-B-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: YT521-B-like protein (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: CPSF30; RNA binding / calmodulin binding / endonuclease/ nucleic acid binding / protein binding (TAIR:AT1G30460.1); Has 746 Blast hits to 703 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 344; Fungi - 142; Plants - 181; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT4G11970.1p  transcript_id AT4G11970.1  protein_id AT4G11970.1p  transcript_id AT4G11970.1  
At4g11980	chr4:007185340	0.0	C/7185340-7185551,7185145-7185250,7184942-7185019,7184754-7184846,7184591-7184683,7184254-7184352,7183845-7184093	AT4G11980.1  CDS  gene_syn ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 14, ATNUDT14, ATNUDX14, F16J13.50, F16J13_50  gene ATNUDX14  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|18815383|IDA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  go_function ADP-sugar diphosphatase activity|GO:0019144|18815383|IDA  go_function ADP-ribose pyrophosphohydrolase activity|GO:0080041|18815383|IDA  go_function ADP-glucose pyrophosphohydrolase activity|GO:0080042|18815383|IDA  product ATNUDX14 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 14); ADP-glucose pyrophosphohydrolase/ ADP-ribose pyrophosphohydrolase/ ADP-sugar diphosphatase/ hydrolase  note ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 14 (ATNUDX14); FUNCTIONS IN: hydrolase activity, ADP-sugar diphosphatase activity, ADP-ribose pyrophosphohydrolase activity, ADP-glucose pyrophosphohydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), NUDIX hydrolase, core (InterPro:IPR000086); Has 845 Blast hits to 845 proteins in 388 species: Archae - 4; Bacteria - 636; Metazoa - 8; Fungi - 51; Plants - 17; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).  protein_id AT4G11980.1p  transcript_id AT4G11980.1  protein_id AT4G11980.1p  transcript_id AT4G11980.1  
At4g11985	chr4:007185704	0.0	W/7185704-7185777	AT4G11985.1  tRNA  gene_syn 67109.TRNA-VAL-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Val (anticodon: AAC)  transcript_id AT4G11985.1  
At4g11990	chr4:007189491	0.0	C/7189491-7189689,7189020-7189163,7188813-7188893,7188528-7188660,7188344-7188434,7188155-7188205,7187976-7188067,7187826-7187901,7187684-7187746,7187502-7187588,7187360-7187415,7187214-7187286,7187059-7187124,7186903-7186965,7186733-7186804,7186602-7186646,7186406-7186519	AT4G11990.1  CDS  gene_syn F16J13.60, F16J13_60  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22860.1); Has 110 Blast hits to 102 proteins in 19 species: Archae - 0; Bacteria - 2; Metazoa - 53; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G11990.1p  transcript_id AT4G11990.1  protein_id AT4G11990.1p  transcript_id AT4G11990.1  
At4g12000	chr4:007194664	0.0	C/7194664-7194942,7194104-7194340,7193807-7194024,7193527-7193713	AT4G12000.1  CDS  gene_syn F16J13.70, F16J13_70  go_process response to oxidative stress|GO:0006979|18614705|IMP  product unknown protein  note INVOLVED IN: response to oxidative stress; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22850.1); Has 1153 Blast hits to 1150 proteins in 277 species: Archae - 2; Bacteria - 485; Metazoa - 104; Fungi - 24; Plants - 140; Viruses - 0; Other Eukaryotes - 398 (source: NCBI BLink).  protein_id AT4G12000.1p  transcript_id AT4G12000.1  protein_id AT4G12000.1p  transcript_id AT4G12000.1  
At4g12005	chr4:007196706	0.0	W/7196706-7196753,7196891-7197085	AT4G12005.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G12005.1p  transcript_id AT4G12005.1  protein_id AT4G12005.1p  transcript_id AT4G12005.1  
At4g12010	chr4:007200921	0.0	C/7200921-7201393,7199645-7200779,7199224-7199535,7198077-7199132,7197325-7198008	AT4G12010.1  CDS  gene_syn F16J13.80, F16J13_80  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: protein binding, transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G19510.1); Has 22360 Blast hits to 15112 proteins in 670 species: Archae - 19; Bacteria - 1728; Metazoa - 4451; Fungi - 229; Plants - 14971; Viruses - 4; Other Eukaryotes - 958 (source: NCBI BLink).  protein_id AT4G12010.1p  transcript_id AT4G12010.1  protein_id AT4G12010.1p  transcript_id AT4G12010.1  
At4g12020	chr4:007201656	0.0	W/7201656-7201855,7202003-7202821,7202907-7203060,7203351-7203997,7204075-7204236,7204359-7204748,7204911-7205982,7206058-7206378,7206429-7207600,7207746-7207830,7207953-7208015,7208087-7208244,7208344-7208416,7208516-7208563,7208916-7209032,7209263-7209469	AT4G12020.2  CDS  gene_syn ATWRKY19, F16J13.90, F16J13_90, MAPKKK11, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, WRKY19  gene WRKY19  function member of MEKK subfamily  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY19; transcription factor  note WRKY19; FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 6 processes; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Toll-Interleukin receptor (InterPro:IPR000157), Protein kinase-like (InterPro:IPR011009), DNA-binding WRKY (InterPro:IPR003657), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat 3 (InterPro:IPR011713), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: MEKK1 (MAP KINASE KINASE KINASE 1); DNA binding / MAP kinase kinase kinase/ kinase/ kinase binding / protein binding (TAIR:AT4G08500.1); Has 117323 Blast hits to 105479 proteins in 2938 species: Archae - 75; Bacteria - 9130; Metazoa - 44912; Fungi - 8431; Plants - 36207; Viruses - 507; Other Eukaryotes - 18061 (source: NCBI BLink).  protein_id AT4G12020.2p  transcript_id AT4G12020.2  protein_id AT4G12020.2p  transcript_id AT4G12020.2  
At4g12020	chr4:007201656	0.0	W/7201656-7201855,7202003-7202821,7202907-7203060,7203351-7203997,7204075-7204236,7204359-7204748,7204911-7205982,7206058-7206378,7206429-7207600,7207746-7207830,7207953-7208015,7208087-7208244,7208344-7208416,7208516-7208596	AT4G12020.1  CDS  gene_syn ATWRKY19, F16J13.90, F16J13_90, MAPKKK11, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, WRKY19  gene WRKY19  function member of MEKK subfamily  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY19; transcription factor  note WRKY19; FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), DNA-binding WRKY (InterPro:IPR003657), ATPase, AAA+ type, core (InterPro:IPR003593), Protein kinase, core (InterPro:IPR000719), EGF (InterPro:IPR006210), Leucine-rich repeat 3 (InterPro:IPR011713), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor (TAIR:AT4G19500.1); Has 103258 Blast hits to 92215 proteins in 2656 species: Archae - 40; Bacteria - 6793; Metazoa - 39649; Fungi - 7257; Plants - 34222; Viruses - 324; Other Eukaryotes - 14973 (source: NCBI BLink).  protein_id AT4G12020.1p  transcript_id AT4G12020.1  protein_id AT4G12020.1p  transcript_id AT4G12020.1  
At4g12020	chr4:007201656	0.0	W/7201656-7201855,7202003-7202821,7202907-7203060,7203351-7203997,7204075-7204236,7204359-7204748,7204911-7205982,7206058-7206378,7206429-7207600,7207746-7207830,7207953-7208015,7208087-7208244,7208344-7208416,7208916-7209032,7209263-7209469	AT4G12020.3  CDS  gene_syn ATWRKY19, F16J13.90, F16J13_90, MAPKKK11, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, WRKY19  gene WRKY19  function member of MEKK subfamily  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY19; transcription factor  note WRKY19; FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 6 processes; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine protein kinase (InterPro:IPR002290), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Toll-Interleukin receptor (InterPro:IPR000157), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), DNA-binding WRKY (InterPro:IPR003657), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat 3 (InterPro:IPR011713), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: MEKK1 (MAP KINASE KINASE KINASE 1); DNA binding / MAP kinase kinase kinase/ kinase/ kinase binding / protein binding (TAIR:AT4G08500.1).  protein_id AT4G12020.3p  transcript_id AT4G12020.3  protein_id AT4G12020.3p  transcript_id AT4G12020.3  
At4g12030	chr4:007210981	0.0	W/7210981-7211122,7211213-7211260,7211356-7211411,7211482-7211612,7211691-7212137,7212229-7212565,7212651-7212713	AT4G12030.2  CDS  gene_syn F16J13.100, F16J13_100  go_component chloroplast|GO:0009507||IEA  go_component membrane|GO:0016020||IEA  go_process sodium ion transport|GO:0006814||IEA  go_component membrane|GO:0016020||ISS  go_process sodium ion transport|GO:0006814||ISS  go_function transporter activity|GO:0005215||ISS  go_function bile acid:sodium symporter activity|GO:0008508||ISS  product bile acid:sodium symporter family protein  note bile acid:sodium symporter family protein; FUNCTIONS IN: transporter activity, bile acid:sodium symporter activity; INVOLVED IN: sodium ion transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Bile acid:sodium symporter (InterPro:IPR002657); BEST Arabidopsis thaliana protein match is: bile acid:sodium symporter family protein (TAIR:AT4G22840.1); Has 2562 Blast hits to 2560 proteins in 459 species: Archae - 30; Bacteria - 869; Metazoa - 343; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 1171 (source: NCBI BLink).  protein_id AT4G12030.2p  transcript_id AT4G12030.2  protein_id AT4G12030.2p  transcript_id AT4G12030.2  
At4g12030	chr4:007211716	0.0	W/7211716-7212137,7212229-7212565,7212651-7212713	AT4G12030.1  CDS  gene_syn F16J13.100, F16J13_100  go_component membrane|GO:0016020||IEA  go_process sodium ion transport|GO:0006814||IEA  go_component membrane|GO:0016020||ISS  go_process sodium ion transport|GO:0006814||ISS  go_function transporter activity|GO:0005215||ISS  go_function bile acid:sodium symporter activity|GO:0008508||ISS  product bile acid:sodium symporter family protein  note bile acid:sodium symporter family protein; FUNCTIONS IN: transporter activity, bile acid:sodium symporter activity; INVOLVED IN: sodium ion transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Bile acid:sodium symporter (InterPro:IPR002657); BEST Arabidopsis thaliana protein match is: bile acid:sodium symporter family protein (TAIR:AT4G22840.1); Has 2518 Blast hits to 2516 proteins in 453 species: Archae - 30; Bacteria - 853; Metazoa - 342; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 1144 (source: NCBI BLink).  protein_id AT4G12030.1p  transcript_id AT4G12030.1  protein_id AT4G12030.1p  transcript_id AT4G12030.1  
At4g12040	chr4:007215341	0.0	W/7215341-7215868	AT4G12040.1  CDS  gene_syn F16J13.110, F16J13_110  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product zinc finger (AN1-like) family protein  note zinc finger (AN1-like) family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: zinc finger (AN1-like) family protein (TAIR:AT4G22820.2); Has 767 Blast hits to 766 proteins in 111 species: Archae - 2; Bacteria - 0; Metazoa - 379; Fungi - 2; Plants - 271; Viruses - 6; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT4G12040.1p  transcript_id AT4G12040.1  protein_id AT4G12040.1p  transcript_id AT4G12040.1  
At4g12040	chr4:007215341	0.0	W/7215341-7215868	AT4G12040.2  CDS  gene_syn F16J13.110, F16J13_110  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product zinc finger (AN1-like) family protein  note zinc finger (AN1-like) family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: zinc finger (AN1-like) family protein (TAIR:AT4G22820.2); Has 767 Blast hits to 766 proteins in 111 species: Archae - 2; Bacteria - 0; Metazoa - 379; Fungi - 2; Plants - 271; Viruses - 6; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT4G12040.2p  transcript_id AT4G12040.2  protein_id AT4G12040.2p  transcript_id AT4G12040.2  
At4g12050	chr4:007220139	0.0	C/7220139-7221158	AT4G12050.1  CDS  gene_syn F16J13.120, F16J13_120  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DNA-binding protein-related  note DNA-binding protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: DNA-binding protein-related (TAIR:AT4G22810.1); Has 6184 Blast hits to 3811 proteins in 226 species: Archae - 0; Bacteria - 109; Metazoa - 2401; Fungi - 618; Plants - 547; Viruses - 15; Other Eukaryotes - 2494 (source: NCBI BLink).  protein_id AT4G12050.1p  transcript_id AT4G12050.1  protein_id AT4G12050.1p  transcript_id AT4G12050.1  
At4g12060	chr4:007229660	0.0	C/7229660-7229898,7229509-7229547,7229289-7229398,7228998-7229177,7228269-7228426	AT4G12060.1  CDS  gene_syn F16J13.130, F16J13_130  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastid stroma|GO:0009532|14593120|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process protein metabolic process|GO:0019538||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||ISS  product Clp amino terminal domain-containing protein  note Clp amino terminal domain-containing protein; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: protein metabolic process; LOCATED IN: plastid stroma, chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Clp amino terminal domain-containing protein (TAIR:AT4G25370.1); Has 1078 Blast hits to 1067 proteins in 317 species: Archae - 0; Bacteria - 628; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 369 (source: NCBI BLink).  protein_id AT4G12060.1p  transcript_id AT4G12060.1  protein_id AT4G12060.1p  transcript_id AT4G12060.1  
At4g12070	chr4:007231941	0.0	W/7231941-7232361,7232895-7233047,7233150-7233286,7233376-7233603,7233760-7234272	AT4G12070.1  CDS  gene_syn F16J13.140, F16J13_140  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 44 Blast hits to 44 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G12070.1p  transcript_id AT4G12070.1  protein_id AT4G12070.1p  transcript_id AT4G12070.1  
At4g12065	chr4:007232799	0.0	C/7232799-7232871	AT4G12065.1  tRNA  gene_syn 67109.TRNA-ALA-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: AGC)  transcript_id AT4G12065.1  
At4g12080	chr4:007239466	0.0	W/7239466-7239940,7240405-7240472,7240565-7240696,7240773-7240934,7241013-7241246	AT4G12080.1  CDS  gene_syn F16J13.150, F16J13_150  go_function DNA binding|GO:0003677||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleolus|GO:0005730|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function DNA binding|GO:0003677||ISS  product DNA-binding family protein  note DNA-binding family protein; FUNCTIONS IN: DNA binding; LOCATED IN: mitochondrion, nucleolus, nucleus, cytoplasm; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding, conserved site (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: DNA-binding family protein (TAIR:AT4G22770.1); Has 474 Blast hits to 472 proteins in 40 species: Archae - 0; Bacteria - 4; Metazoa - 18; Fungi - 12; Plants - 428; Viruses - 2; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT4G12080.1p  transcript_id AT4G12080.1  protein_id AT4G12080.1p  transcript_id AT4G12080.1  
At4g12090	chr4:007242853	0.0	C/7242853-7242924,7242548-7242729,7242299-7242421,7242165-7242195	AT4G12090.1  CDS  gene_syn F16J13.160, F16J13_160  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_component membrane|GO:0016020||ISS  go_function molecular_function|GO:0003674||ND  product cornichon family protein  note cornichon family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular signaling cascade; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Cornichon (InterPro:IPR003377); BEST Arabidopsis thaliana protein match is: cornichon family protein (TAIR:AT1G12390.1); Has 454 Blast hits to 454 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 268; Fungi - 111; Plants - 41; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT4G12090.1p  transcript_id AT4G12090.1  protein_id AT4G12090.1p  transcript_id AT4G12090.1  
At4g12100	chr4:007247926	0.0	C/7247926-7248127,7247376-7247847,7247089-7247275,7246590-7246979,7246453-7246506	AT4G12100.1  CDS  gene_syn F16J13.170, F16J13_170  go_component cullin-RING ubiquitin ligase complex|GO:0031461||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin protein ligase binding|GO:0031625||IEA  product ubiquitin protein ligase binding  note ubiquitin protein ligase binding; FUNCTIONS IN: ubiquitin protein ligase binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cullin-RING ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: Cullin, N-terminal region (InterPro:IPR001373), Cullin repeat-like (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: CUL4 (CULLIN4); protein binding / ubiquitin-protein ligase (TAIR:AT5G46210.1); Has 911 Blast hits to 911 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 563; Fungi - 179; Plants - 120; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT4G12100.1p  transcript_id AT4G12100.1  protein_id AT4G12100.1p  transcript_id AT4G12100.1  
At4g12110	chr4:007254197	0.0	W/7254197-7254532,7254751-7255073,7255566-7255713,7255824-7255856,7255948-7256004	AT4G12110.1  CDS  gene_syn ATSMO1, ATSMO1-1, F16J13.180, F16J13_180, SMO1-1, STEROL 4-ALPHA-METHYL-OXIDASE 1, STEROL-4ALPHA-METHYL OXIDASE 1-1  gene SMO1-1  function Encodes a member of the SMO1 family of sterol 4alpha-methyl oxidases. More specifically functions as a 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha- methyl oxidase.  go_component membrane|GO:0016020|14653780|TAS  go_process sterol biosynthetic process|GO:0016126|14653780|IMP  go_function C-4 methylsterol oxidase activity|GO:0000254|14653780|IMP  go_function C-4 methylsterol oxidase activity|GO:0000254|14653780|ISS  go_function catalytic activity|GO:0003824||ISS  go_function 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha-methyl oxidase activity|GO:0080064|14653780|NAS  product SMO1-1 (STEROL-4ALPHA-METHYL OXIDASE 1-1); 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase/ catalytic  note STEROL-4ALPHA-METHYL OXIDASE 1-1 (SMO1-1); FUNCTIONS IN: C-4 methylsterol oxidase activity, 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha-methyl oxidase activity, catalytic activity; INVOLVED IN: sterol biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: SMO1-2 (STEROL C4-METHYL OXIDASE 1-2); 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase/ catalytic (TAIR:AT4G22756.1); Has 1520 Blast hits to 1517 proteins in 252 species: Archae - 0; Bacteria - 208; Metazoa - 388; Fungi - 452; Plants - 243; Viruses - 2; Other Eukaryotes - 227 (source: NCBI BLink).  protein_id AT4G12110.1p  transcript_id AT4G12110.1  protein_id AT4G12110.1p  transcript_id AT4G12110.1  
At4g12115	chr4:007256415	0.0	W/7256415-7256487	AT4G12115.1  tRNA  gene_syn 67109.TRNA-LYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Lys (anticodon: CTT)  transcript_id AT4G12115.1  
At4g12120	chr4:007260842	0.0	C/7260842-7260914,7260512-7260570,7260310-7260391,7260149-7260227,7260016-7260066,7259829-7259925,7259691-7259723,7259294-7259419,7259028-7259219,7258860-7258943,7258666-7258764,7258503-7258579,7258322-7258418,7258112-7258237,7257948-7258043,7257734-7257856,7257558-7257635,7257275-7257453,7257015-7257105,7256835-7256924,7256687-7256743	AT4G12120.1  CDS  gene_syn ATSEC1B, F16J13.190, F16J13_190, SEC1B  gene SEC1B  function member of KEULE Gene Family  go_component plasma membrane|GO:0005886|17317660|IDA  go_process vesicle docking during exocytosis|GO:0006904||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_process protein secretion|GO:0009306||ISS  go_function protein transporter activity|GO:0008565||ISS  product SEC1B; protein transporter  note SEC1B; FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein secretion, vesicle-mediated transport, vesicle docking during exocytosis; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); BEST Arabidopsis thaliana protein match is: KEU (keule); protein transporter (TAIR:AT1G12360.1); Has 1343 Blast hits to 1322 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 664; Fungi - 315; Plants - 111; Viruses - 0; Other Eukaryotes - 253 (source: NCBI BLink).  protein_id AT4G12120.1p  transcript_id AT4G12120.1  protein_id AT4G12120.1p  transcript_id AT4G12120.1  
At4g12130	chr4:007263640	0.0	W/7263640-7264091,7264478-7264704,7264781-7264879,7264952-7265110,7265181-7265425	AT4G12130.1  CDS  gene_syn F16J13.200, F16J13_200  go_component cytoplasm|GO:0005737||IEA  go_process glycine catabolic process|GO:0006546||IEA  go_function aminomethyltransferase activity|GO:0004047||IEA  go_function aminomethyltransferase activity|GO:0004047||ISS  product aminomethyltransferase  note aminomethyltransferase; FUNCTIONS IN: aminomethyltransferase activity; INVOLVED IN: glycine catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Folate-binding, YgfZ (InterPro:IPR017703), Glycine cleavage T-protein, N-terminal (InterPro:IPR006222), Glycine cleavage T-protein, C-terminal barrel (InterPro:IPR013977); Has 2891 Blast hits to 2889 proteins in 726 species: Archae - 6; Bacteria - 1150; Metazoa - 88; Fungi - 107; Plants - 23; Viruses - 0; Other Eukaryotes - 1517 (source: NCBI BLink).  protein_id AT4G12130.1p  transcript_id AT4G12130.1  protein_id AT4G12130.1p  transcript_id AT4G12130.1  
At4g12135	chr4:007265907	0.0	W/7265907-7266276	AT4G12135.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 3.1e-16 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At4g12140	chr4:007266546	0.0	C/7266546-7267154	AT4G12140.1  CDS  gene_syn T4C9.1  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G12150.1); Has 5432 Blast hits to 5420 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 2036; Fungi - 439; Plants - 1747; Viruses - 63; Other Eukaryotes - 1147 (source: NCBI BLink).  protein_id AT4G12140.1p  transcript_id AT4G12140.1  protein_id AT4G12140.1p  transcript_id AT4G12140.1  
At4g12150	chr4:007269685	0.0	C/7269685-7270267,7269428-7269490,7268837-7269264	AT4G12150.1  CDS  gene_syn T4C9.2  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G12140.1); Has 1633 Blast hits to 1617 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 620; Fungi - 66; Plants - 545; Viruses - 8; Other Eukaryotes - 394 (source: NCBI BLink).  protein_id AT4G12150.1p  transcript_id AT4G12150.1  protein_id AT4G12150.1p  transcript_id AT4G12150.1  
At4g12160	chr4:007272211	0.0	W/7272211-7272655	AT4G12160.1  pseudogenic_transcript  pseudo  gene_syn T4C9.3  note pseudogene, 40S ribosomal protein S9 (RPS9A), ribosomal protein S9.e - slime mold,PIR1:R3DO24; blastp match of 56% identity and 7.2e-09 P-value to SP|P17959|RS9_TRYBB Probable 40S ribosomal protein S9. {Trypanosoma brucei brucei}  
At4g12170	chr4:007274652	0.0	C/7274652-7274727,7273997-7274307	AT4G12170.1  CDS  gene_syn T4C9.10, T4C9_10  go_process cell redox homeostasis|GO:0045454||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product thioredoxin family protein  note thioredoxin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin family protein (TAIR:AT1G52990.1); Has 4136 Blast hits to 4130 proteins in 1088 species: Archae - 52; Bacteria - 2306; Metazoa - 250; Fungi - 213; Plants - 262; Viruses - 0; Other Eukaryotes - 1053 (source: NCBI BLink).  protein_id AT4G12170.1p  transcript_id AT4G12170.1  protein_id AT4G12170.1p  transcript_id AT4G12170.1  
At4g12180	chr4:007275740	0.0	W/7275740-7277964	AT4G12180.1  mRNA_TE_gene  pseudo  gene_syn T4C9.20, T4C9_20  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.2e-28 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At4g12190	chr4:007278545	0.0	C/7278545-7278760	AT4G12190.1  CDS  gene_syn T4C9.30, T4C9_30  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G05350.1); Has 5498 Blast hits to 5452 proteins in 208 species: Archae - 0; Bacteria - 4; Metazoa - 1755; Fungi - 494; Plants - 2163; Viruses - 27; Other Eukaryotes - 1055 (source: NCBI BLink).  protein_id AT4G12190.1p  transcript_id AT4G12190.1  protein_id AT4G12190.1p  transcript_id AT4G12190.1  
At4g12200	chr4:007279891	0.0	W/7279891-7280757	AT4G12200.1  mRNA_TE_gene  pseudo  gene_syn T4C9.40, T4C9_40  note Transposable element gene, similar to polyprotein [Oryza sativa] (GB:BAB03249.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878)  
At4g12210	chr4:007281308	0.0	C/7281308-7281919	AT4G12210.1  CDS  gene_syn T4C9.50, T4C9_50  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G05350.1); Has 4707 Blast hits to 4663 proteins in 203 species: Archae - 0; Bacteria - 4; Metazoa - 1658; Fungi - 449; Plants - 1633; Viruses - 22; Other Eukaryotes - 941 (source: NCBI BLink).  protein_id AT4G12210.1p  transcript_id AT4G12210.1  protein_id AT4G12210.1p  transcript_id AT4G12210.1  
At4g12220	chr4:007283248	0.0	C/7283248-7283739	AT4G12220.1  CDS  gene_syn T4C9.60, T4C9_60  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G12210.1); Has 18 Blast hits to 15 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G12220.1p  transcript_id AT4G12220.1  protein_id AT4G12220.1p  transcript_id AT4G12220.1  
At4g12230	chr4:007284645	0.0	W/7284645-7284716,7285384-7285509,7285689-7285787,7285893-7286035,7286133-7286241,7286358-7286465,7286560-7286700,7286968-7287348	AT4G12230.1  CDS  gene_syn T4C9.70, T4C9_70  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product esterase/lipase/thioesterase family protein  note esterase/lipase/thioesterase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); Has 1000 Blast hits to 996 proteins in 344 species: Archae - 4; Bacteria - 681; Metazoa - 86; Fungi - 4; Plants - 25; Viruses - 3; Other Eukaryotes - 197 (source: NCBI BLink).  protein_id AT4G12230.1p  transcript_id AT4G12230.1  protein_id AT4G12230.1p  transcript_id AT4G12230.1  
At4g12240	chr4:007287895	0.0	W/7287895-7288989	AT4G12240.1  CDS  gene_syn T4C9.80, T4C9_80  go_component mitochondrion|GO:0005739|14671022|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT5G52010.1); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 31; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G12240.1p  transcript_id AT4G12240.1  protein_id AT4G12240.1p  transcript_id AT4G12240.1  
At4g12250	chr4:007289538	0.0	C/7289538-7290848	AT4G12250.1  CDS  gene_syn GAE5, T4C9.90, T4C9_90, UDP-D-GLUCURONATE 4-EPIMERASE 5  gene GAE5  function UDP-D-glucuronate 4-epimerase  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_component cellular_component|GO:0005575||ND  go_process nucleotide-sugar metabolic process|GO:0009225||ISS  go_function catalytic activity|GO:0003824||ISS  go_function UDP-glucuronate 4-epimerase activity|GO:0050378|15247385|ISS  product GAE5 (UDP-D-GLUCURONATE 4-EPIMERASE 5); UDP-glucuronate 4-epimerase/ catalytic  note UDP-D-GLUCURONATE 4-EPIMERASE 5 (GAE5); FUNCTIONS IN: UDP-glucuronate 4-epimerase activity, catalytic activity; INVOLVED IN: cellular metabolic process, carbohydrate metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: GAE3 (UDP-D-GLUCURONATE 4-EPIMERASE 3); UDP-glucuronate 4-epimerase/ catalytic (TAIR:AT4G00110.1); Has 28514 Blast hits to 28509 proteins in 1684 species: Archae - 458; Bacteria - 13563; Metazoa - 612; Fungi - 254; Plants - 637; Viruses - 27; Other Eukaryotes - 12963 (source: NCBI BLink).  protein_id AT4G12250.1p  transcript_id AT4G12250.1  protein_id AT4G12250.1p  transcript_id AT4G12250.1  
At4g12260	chr4:007293057	0.0	C/7293057-7293719	AT4G12260.1  mRNA_TE_gene  pseudo  gene_syn T4C9.100, T4C9_100  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 6.7e-21 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays)  
At4g12270	chr4:007297808	0.0	W/7297808-7299025,7299373-7299531,7299925-7299930	AT4G12270.1  CDS  gene_syn T4C9.110, T4C9_110  go_component endomembrane system|GO:0012505||IEA  go_process cellular amine metabolic process|GO:0009308||IEA  go_function copper ion binding|GO:0005507||IEA  go_function amine oxidase activity|GO:0008131||IEA  go_function quinone binding|GO:0048038||IEA  go_function copper ion binding|GO:0005507||ISS  product copper amine oxidase family protein  note copper amine oxidase family protein; FUNCTIONS IN: quinone binding, amine oxidase activity, copper ion binding; INVOLVED IN: cellular amine metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal region (InterPro:IPR016182), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: amine oxidase/ copper ion binding / quinone binding (TAIR:AT4G12290.1); Has 740 Blast hits to 739 proteins in 135 species: Archae - 4; Bacteria - 233; Metazoa - 16; Fungi - 235; Plants - 126; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink).  protein_id AT4G12270.1p  transcript_id AT4G12270.1  protein_id AT4G12270.1p  transcript_id AT4G12270.1  
At4g12275	chr4:007300456	0.0	C/7300456-7301646	AT4G12275.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G36905.1); similar to Ribonuclease H [Medicago truncatula] (GB:ABD28505.1); contains InterPro domain Ribonuclease H; (InterPro:IPR002156); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)  
At4g12280	chr4:007301769	0.0	W/7301769-7301777,7301912-7302028,7302126-7302688,7302781-7302994	AT4G12280.1  CDS  gene_syn T4C9.120, T4C9_120  go_process cellular amine metabolic process|GO:0009308||IEA  go_function copper ion binding|GO:0005507||IEA  go_function amine oxidase activity|GO:0008131||IEA  go_function quinone binding|GO:0048038||IEA  go_component cellular_component|GO:0005575||ND  go_function copper ion binding|GO:0005507||ISS  product copper amine oxidase family protein  note copper amine oxidase family protein; FUNCTIONS IN: amine oxidase activity, quinone binding, copper ion binding; INVOLVED IN: cellular amine metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: amine oxidase/ copper ion binding / quinone binding (TAIR:AT4G12290.1); Has 996 Blast hits to 994 proteins in 163 species: Archae - 4; Bacteria - 239; Metazoa - 220; Fungi - 280; Plants - 121; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).  protein_id AT4G12280.1p  transcript_id AT4G12280.1  protein_id AT4G12280.1p  transcript_id AT4G12280.1  
At4g12290	chr4:007304434	0.0	W/7304434-7305768,7305880-7305993,7306112-7306674,7306760-7306973	AT4G12290.1  CDS  gene_syn T4C9.130, T4C9_130  go_component vacuole|GO:0005773|15539469|IDA  go_process cellular amine metabolic process|GO:0009308||IEA  go_function copper ion binding|GO:0005507||IEA  go_function amine oxidase activity|GO:0008131||IEA  go_function quinone binding|GO:0048038||IEA  go_function copper ion binding|GO:0005507||ISS  product amine oxidase/ copper ion binding / quinone binding  note amine oxidase/ copper ion binding / quinone binding; FUNCTIONS IN: quinone binding, amine oxidase activity, copper ion binding; INVOLVED IN: cellular amine metabolic process; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal region (InterPro:IPR016182), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: copper amine oxidase, putative (TAIR:AT1G62810.1); Has 1074 Blast hits to 1072 proteins in 164 species: Archae - 4; Bacteria - 240; Metazoa - 219; Fungi - 286; Plants - 130; Viruses - 0; Other Eukaryotes - 195 (source: NCBI BLink).  protein_id AT4G12290.1p  transcript_id AT4G12290.1  protein_id AT4G12290.1p  transcript_id AT4G12290.1  
At4g12300	chr4:007308766	0.0	C/7308766-7309692,7308016-7308639	AT4G12300.1  CDS  gene_syn CYP706A4, CYTOCHROME P450, FAMILY 706, SUBFAMILY A, POLYPEPTIDE 4, T4C9.140, T4C9_140  gene CYP706A4  function member of CYP706A  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component cellular_component|GO:0005575||ND  go_function oxygen binding|GO:0019825||ISS  product CYP706A4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP706A4; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP706A6; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G12320.1); Has 23981 Blast hits to 23762 proteins in 1264 species: Archae - 32; Bacteria - 2146; Metazoa - 10455; Fungi - 4649; Plants - 5706; Viruses - 3; Other Eukaryotes - 990 (source: NCBI BLink).  protein_id AT4G12300.1p  transcript_id AT4G12300.1  protein_id AT4G12300.1p  transcript_id AT4G12300.1  
At4g12310	chr4:007311584	0.0	C/7311584-7312522,7310598-7311221	AT4G12310.1  CDS  gene_syn CYP706A5, CYTOCHROME P450, FAMILY 706, SUBFAMILY A, POLYPEPTIDE 5, T4C9.150, T4C9_150  gene CYP706A5  function member of CYP706A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP706A5; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP706A5; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP706A6; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G12320.1); Has 23802 Blast hits to 23620 proteins in 1260 species: Archae - 32; Bacteria - 2065; Metazoa - 10460; Fungi - 4598; Plants - 5755; Viruses - 3; Other Eukaryotes - 889 (source: NCBI BLink).  protein_id AT4G12310.1p  transcript_id AT4G12310.1  protein_id AT4G12310.1p  transcript_id AT4G12310.1  
At4g12320	chr4:007315715	0.0	C/7315715-7316647,7314939-7315562	AT4G12320.1  CDS  gene_syn CYP706A6, CYTOCHROME P450, FAMILY 706, SUBFAMILY A, POLYPEPTIDE 6, T4C9.160, T4C9_160  gene CYP706A6  function member of CYP706A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP706A6; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP706A6; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP706A5; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G12310.1); Has 23566 Blast hits to 23492 proteins in 1256 species: Archae - 32; Bacteria - 2114; Metazoa - 10258; Fungi - 4587; Plants - 5673; Viruses - 3; Other Eukaryotes - 899 (source: NCBI BLink).  protein_id AT4G12320.1p  transcript_id AT4G12320.1  protein_id AT4G12320.1p  transcript_id AT4G12320.1  
At4g12330	chr4:007318723	0.0	C/7318723-7319658,7317776-7318396	AT4G12330.1  CDS  gene_syn CYP706A7, CYTOCHROME P450, FAMILY 706, SUBFAMILY A, POLYPEPTIDE 7, T4C9.170, T4C9_170  gene CYP706A7  function member of CYP706A  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component cellular_component|GO:0005575||ND  go_function oxygen binding|GO:0019825||ISS  product CYP706A7; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP706A7; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP706A3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT5G44620.1); Has 23301 Blast hits to 23155 proteins in 1218 species: Archae - 23; Bacteria - 1945; Metazoa - 10353; Fungi - 4394; Plants - 5588; Viruses - 3; Other Eukaryotes - 995 (source: NCBI BLink).  protein_id AT4G12330.1p  transcript_id AT4G12330.1  protein_id AT4G12330.1p  transcript_id AT4G12330.1  
At4g12334	chr4:007320941	0.0	C/7320941-7321061,7320602-7320822	AT4G12334.1  CDS  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product electron carrier/ heme binding / iron ion binding / monooxygenase  note electron carrier/ heme binding / iron ion binding / monooxygenase; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, heme binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128); BEST Arabidopsis thaliana protein match is: CYP706A2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G22710.1).  protein_id AT4G12334.1p  transcript_id AT4G12334.1  protein_id AT4G12334.1p  transcript_id AT4G12334.1  
At4g12340	chr4:007321492	0.0	C/7321492-7322004	AT4G12340.1  CDS  gene_syn T4C9.180, T4C9_180  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625); Has 33 Blast hits to 31 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G12340.1p  transcript_id AT4G12340.1  protein_id AT4G12340.1p  transcript_id AT4G12340.1  
At4g12350	chr4:007324912	0.0	W/7324912-7325174,7326039-7326636	AT4G12350.1  CDS  gene_syn AtMYB42, MYB42, T4C9.190, T4C9_190, myb domain protein 42  gene MYB42  function Encodes a putative transcription factor (MYB42).  go_component nucleus|GO:0005634|18952777|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB42 (myb domain protein 42); transcription factor  note myb domain protein 42 (MYB42); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of secondary cell wall thickening, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB85 (myb domain protein 85); DNA binding / transcription activator/ transcription factor (TAIR:AT4G22680.1); Has 22 Blast hits to 22 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G12350.1p  transcript_id AT4G12350.1  protein_id AT4G12350.1p  transcript_id AT4G12350.1  
At4g12360	chr4:007328753	0.0	C/7328753-7329104,7328425-7328463,7328164-7328258	AT4G12360.1  CDS  gene_syn T4C9.200, T4C9_200  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to membrane; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT1G62790.2); Has 128 Blast hits to 128 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G12360.1p  transcript_id AT4G12360.1  protein_id AT4G12360.1p  transcript_id AT4G12360.1  
At4g12370	chr4:007331972	0.0	W/7331972-7332874	AT4G12370.1  CDS  gene_syn T4C9.210, T4C9_210  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00893.1); Has 76 Blast hits to 71 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G12370.1p  transcript_id AT4G12370.1  protein_id AT4G12370.1p  transcript_id AT4G12370.1  
At4g12382	chr4:007334352	0.0	W/7334352-7334768	AT4G12382.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00893.1); Has 86 Blast hits to 86 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G12382.1p  transcript_id AT4G12382.1  protein_id AT4G12382.1p  transcript_id AT4G12382.1  
At4g12382	chr4:007334352	0.0	W/7334352-7334768	AT4G12382.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00893.1); Has 86 Blast hits to 86 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G12382.2p  transcript_id AT4G12382.2  protein_id AT4G12382.2p  transcript_id AT4G12382.2  
At4g12380	chr4:007334446	0.0	C/7334446-7334469,7333918-7334133,7333511-7333753	AT4G12380.1  CDS  gene_syn T1P17.1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G12380.1p  transcript_id AT4G12380.1  protein_id AT4G12380.1p  transcript_id AT4G12380.1  
At4g12390	chr4:007336553	0.0	W/7336553-7337173	AT4G12390.1  CDS  gene_syn PECTIN METHYLESTERASE INHIBITOR 1, PME1, T1P17.4  gene PME1  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product PME1 (PECTIN METHYLESTERASE INHIBITOR 1); enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor  note PECTIN METHYLESTERASE INHIBITOR 1 (PME1); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT1G62770.1); Has 354 Blast hits to 351 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 354; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G12390.1p  transcript_id AT4G12390.1  protein_id AT4G12390.1p  transcript_id AT4G12390.1  
At4g12400	chr4:007340403	0.0	C/7340403-7341239,7339657-7339945,7339258-7339567,7339024-7339180	AT4G12400.1  CDS  gene_syn T1P17.2  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process response to stress|GO:0006950||ISS  go_process response to heat|GO:0009408|17059409|IEP  go_process response to high light intensity|GO:0009644|17059409|IEP  go_process response to hydrogen peroxide|GO:0042542|17059409|IEP  product stress-inducible protein, putative  note stress-inducible protein, putative; FUNCTIONS IN: binding; INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT1G62740.1); Has 39042 Blast hits to 15751 proteins in 909 species: Archae - 1421; Bacteria - 11111; Metazoa - 8874; Fungi - 1974; Plants - 2474; Viruses - 7; Other Eukaryotes - 13181 (source: NCBI BLink).  protein_id AT4G12400.1p  transcript_id AT4G12400.1  protein_id AT4G12400.1p  transcript_id AT4G12400.1  
At4g12400	chr4:007340403	0.0	C/7340403-7341239,7339657-7339945,7339258-7339567,7339054-7339180,7338866-7338979	AT4G12400.2  CDS  gene_syn T1P17.2  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process response to stress|GO:0006950||ISS  go_process response to heat|GO:0009408|17059409|IEP  go_process response to high light intensity|GO:0009644|17059409|IEP  go_process response to hydrogen peroxide|GO:0042542|17059409|IEP  product stress-inducible protein, putative  note stress-inducible protein, putative; FUNCTIONS IN: binding; INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT1G62740.1); Has 39093 Blast hits to 15822 proteins in 911 species: Archae - 1416; Bacteria - 11135; Metazoa - 8936; Fungi - 1950; Plants - 2455; Viruses - 7; Other Eukaryotes - 13194 (source: NCBI BLink).  protein_id AT4G12400.2p  transcript_id AT4G12400.2  protein_id AT4G12400.2p  transcript_id AT4G12400.2  
At4g12405	chr4:007341424	0.0	C/7341424-7341497	AT4G12405.1  tRNA  gene_syn 67110.TRNA-ASN-1, 67111.TRNA-ASN-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asn (anticodon: GTT)  transcript_id AT4G12405.1  
At4g12410	chr4:007342956	0.0	C/7342956-7343429	AT4G12410.1  CDS  gene_syn T1P17.3  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT4G22620.1); Has 573 Blast hits to 567 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 572; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G12410.1p  transcript_id AT4G12410.1  protein_id AT4G12410.1p  transcript_id AT4G12410.1  
At4g12420	chr4:007352737	0.0	C/7352737-7352868,7352068-7352177,7351690-7351960,7351466-7351604,7351017-7351383,7350570-7350935,7350411-7350489,7350121-7350320,7349941-7350040	AT4G12420.1  CDS  gene_syn SKU5, T1P17.10, T1P17_10  gene SKU5  function Encodes a protein of unknown function involved in directed root tip growth. It is a member of 19-member gene family and is distantly related structurally to the multiple-copper oxidases ascorbate oxidase and laccase, though it lacks the copper-binding domains. The protein is glycosylated and GPI-anchored. It is localized to the plasma membrane and the cell wall. The gene is expressed most strongly in expanding tissues.  go_component cell wall|GO:0005618|14595688|IDA  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component anchored to plasma membrane|GO:0046658|12805588|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function copper ion binding|GO:0005507||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component plasma membrane|GO:0005886|12119380|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component plant-type cell wall|GO:0009505|12119380|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12119380|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process cell tip growth|GO:0009932|12119380|IMP  go_function copper ion binding|GO:0005507||ISS  product SKU5; copper ion binding / oxidoreductase  note SKU5; FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: cell tip growth; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKS2 (SKU5 SIMILAR 2); copper ion binding / oxidoreductase (TAIR:AT5G51480.1); Has 4217 Blast hits to 4201 proteins in 779 species: Archae - 4; Bacteria - 1228; Metazoa - 261; Fungi - 1747; Plants - 790; Viruses - 0; Other Eukaryotes - 187 (source: NCBI BLink).  protein_id AT4G12420.1p  transcript_id AT4G12420.1  protein_id AT4G12420.1p  transcript_id AT4G12420.1  
At4g12423	chr4:007357156	0.0	W/7357156-7358643	AT4G12423.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 4.8e-26 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)  
At4g12426	chr4:007361587	0.0	W/7361587-7364457	AT4G12426.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.1e-10 P-value blast match to GB:CAA26446 ORF2 (Ty1_Copia-element) (Drosophila melanogaster)  
At4g12430	chr4:007367098	0.0	C/7367098-7367346,7366874-7367014,7366700-7366771,7366517-7366624,7366285-7366443,7366127-7366204,7365976-7366045,7365819-7365889,7365628-7365720,7365480-7365545	AT4G12430.1  CDS  gene_syn T1P17.20, T1P17_20  go_process trehalose biosynthetic process|GO:0005992||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_process trehalose biosynthetic process|GO:0005992||ISS  go_function trehalose-phosphatase activity|GO:0004805||ISS  product trehalose-6-phosphate phosphatase, putative  note trehalose-6-phosphate phosphatase, putative; FUNCTIONS IN: catalytic activity, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process, metabolic process; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: trehalose-6-phosphate phosphatase, putative (TAIR:AT4G22590.1); Has 1469 Blast hits to 1465 proteins in 520 species: Archae - 29; Bacteria - 758; Metazoa - 195; Fungi - 102; Plants - 277; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT4G12430.1p  transcript_id AT4G12430.1  protein_id AT4G12430.1p  transcript_id AT4G12430.1  
At4g12432	chr4:007367442	0.0	C/7367442-7367516	AT4G12432.1  CDS  gene_syn CPuORF26, Conserved peptide upstream open reading frame 26  gene CPuORF26  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF26 represents a conserved upstream opening reading frame relative to major ORF AT4G12430.1  product CPuORF26 (Conserved peptide upstream open reading frame 26)  note Conserved peptide upstream open reading frame 26 (CPuORF26); Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G12432.1p  transcript_id AT4G12432.1  protein_id AT4G12432.1p  transcript_id AT4G12432.1  
At4g12440	chr4:007376268	0.0	W/7376268-7376349,7376580-7376690,7378351-7378443,7378615-7378764,7379858-7379916,7380067-7380120	AT4G12440.2  CDS  gene_syn APT4, T1P17.30, T1P17_30  gene APT4  go_process adenine salvage|GO:0006168||IEA  go_process nucleoside metabolic process|GO:0009116||IEA  go_function adenine phosphoribosyltransferase activity|GO:0003999||IEA  go_component cellular_component|GO:0005575||ND  go_process adenine salvage|GO:0006168||ISS  go_function adenine phosphoribosyltransferase activity|GO:0003999||ISS  product adenine phosphoribosyltransferase, putative  note APT4; FUNCTIONS IN: adenine phosphoribosyltransferase activity; INVOLVED IN: nucleoside metabolic process, adenine salvage; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Adenine phosphoribosyl transferase (InterPro:IPR005764), Phosphoribosyltransferase (InterPro:IPR000836); BEST Arabidopsis thaliana protein match is: APT3 (ADENINE PHOSPHORIBOSYL TRANSFERASE 3); adenine phosphoribosyltransferase (TAIR:AT4G22570.1); Has 5911 Blast hits to 5911 proteins in 1409 species: Archae - 173; Bacteria - 3251; Metazoa - 144; Fungi - 127; Plants - 101; Viruses - 0; Other Eukaryotes - 2115 (source: NCBI BLink).  protein_id AT4G12440.2p  transcript_id AT4G12440.2  protein_id AT4G12440.2p  transcript_id AT4G12440.2  
At4g12440	chr4:007376268	0.0	W/7376268-7376349,7376580-7376690,7378351-7378443,7378615-7378865	AT4G12440.1  CDS  gene_syn APT4, T1P17.30, T1P17_30  gene APT4  go_process nucleoside metabolic process|GO:0009116||IEA  go_component cellular_component|GO:0005575||ND  go_process adenine salvage|GO:0006168||ISS  go_function adenine phosphoribosyltransferase activity|GO:0003999||ISS  product adenine phosphoribosyltransferase, putative  note APT4; FUNCTIONS IN: adenine phosphoribosyltransferase activity; INVOLVED IN: nucleoside metabolic process, adenine salvage; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836); BEST Arabidopsis thaliana protein match is: APT3 (ADENINE PHOSPHORIBOSYL TRANSFERASE 3); adenine phosphoribosyltransferase (TAIR:AT4G22570.1); Has 5230 Blast hits to 5230 proteins in 1362 species: Archae - 119; Bacteria - 2772; Metazoa - 144; Fungi - 125; Plants - 101; Viruses - 0; Other Eukaryotes - 1969 (source: NCBI BLink).  protein_id AT4G12440.1p  transcript_id AT4G12440.1  protein_id AT4G12440.1p  transcript_id AT4G12440.1  
At4g12450	chr4:007385841	0.0	C/7385841-7386674	AT4G12450.1  CDS  gene_syn T1P17.40, T1P17_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22560.1); Has 107 Blast hits to 107 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 103; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G12450.1p  transcript_id AT4G12450.1  protein_id AT4G12450.1p  transcript_id AT4G12450.1  
At4g12460	chr4:007391400	0.0	W/7391400-7391726,7392691-7393053,7393489-7393585,7393842-7394176,7394402-7394557,7394856-7395023,7395118-7395258,7395342-7395551,7395675-7395788,7395886-7396056	AT4G12460.1  CDS  gene_syn ORP2B, OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B, T1P17.50, T1P17_50  gene ORP2B  go_process steroid metabolic process|GO:0008202||IEA  go_component cellular_component|GO:0005575||ND  go_process steroid metabolic process|GO:0008202||ISS  go_function oxysterol binding|GO:0008142||ISS  product ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B); oxysterol binding  note OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B (ORP2B); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Pleckstrin homology (InterPro:IPR001849), Oxysterol-binding protein (InterPro:IPR000648); BEST Arabidopsis thaliana protein match is: ORP2A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2A); oxysterol binding / phosphoinositide binding (TAIR:AT4G22540.1); Has 2101 Blast hits to 1927 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 1203; Fungi - 487; Plants - 170; Viruses - 0; Other Eukaryotes - 241 (source: NCBI BLink).  protein_id AT4G12460.1p  transcript_id AT4G12460.1  protein_id AT4G12460.1p  transcript_id AT4G12460.1  
At4g12460	chr4:007394033	0.0	W/7394033-7394176,7394402-7394557,7394856-7395023,7395118-7395258,7395342-7395551,7395681-7395788,7395886-7396056	AT4G12460.2  CDS  gene_syn ORP2B, OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B, T1P17.50, T1P17_50  gene ORP2B  go_process steroid metabolic process|GO:0008202||IEA  go_component cellular_component|GO:0005575||ND  go_process steroid metabolic process|GO:0008202||ISS  go_function oxysterol binding|GO:0008142||ISS  product ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B); oxysterol binding  note OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B (ORP2B); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxysterol-binding protein (InterPro:IPR000648); BEST Arabidopsis thaliana protein match is: ORP2A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2A); oxysterol binding / phosphoinositide binding (TAIR:AT4G22540.3); Has 1749 Blast hits to 1699 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 956; Fungi - 411; Plants - 151; Viruses - 0; Other Eukaryotes - 231 (source: NCBI BLink).  protein_id AT4G12460.2p  transcript_id AT4G12460.2  protein_id AT4G12460.2p  transcript_id AT4G12460.2  
At4g12470	chr4:007401371	0.0	C/7401371-7401856	AT4G12470.1  CDS  gene_syn T1P17.60, T1P17_60  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||ISS  go_process defense response to fungus|GO:0050832|17257167|IMP  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: defense response to fungus, lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: pEARLI 1; lipid binding (TAIR:AT4G12480.1); Has 8187 Blast hits to 3081 proteins in 500 species: Archae - 14; Bacteria - 1741; Metazoa - 712; Fungi - 300; Plants - 3089; Viruses - 1032; Other Eukaryotes - 1299 (source: NCBI BLink).  protein_id AT4G12470.1p  transcript_id AT4G12470.1  protein_id AT4G12470.1p  transcript_id AT4G12470.1  
At4g12480	chr4:007406371	0.0	C/7406371-7406877	AT4G12480.1  CDS  gene_syn T1P17.70, T1P17_70, pEARLI 1  gene pEARLI 1  function a putative lipid transfer protein, vernalization-responsive and cold-induced  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||ISS  go_process defense response to fungus|GO:0050832|17257167|IMP  go_function lipid binding|GO:0008289||ISS  product pEARLI 1; lipid binding  note pEARLI 1; FUNCTIONS IN: lipid binding; INVOLVED IN: defense response to fungus, lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, LP.02 two leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT4G12500.1); Has 24677 Blast hits to 6049 proteins in 756 species: Archae - 83; Bacteria - 6024; Metazoa - 2368; Fungi - 861; Plants - 5294; Viruses - 1728; Other Eukaryotes - 8319 (source: NCBI BLink).  protein_id AT4G12480.1p  transcript_id AT4G12480.1  protein_id AT4G12480.1p  transcript_id AT4G12480.1  
At4g12490	chr4:007409830	0.0	C/7409830-7410378	AT4G12490.1  CDS  gene_syn T1P17.80, T1P17_80  go_process lipid transport|GO:0006869||ISS  go_process defense response to fungus|GO:0050832|17257167|IMP  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: defense response to fungus, lipid transport; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT4G12500.1); Has 16914 Blast hits to 6427 proteins in 685 species: Archae - 114; Bacteria - 3569; Metazoa - 2755; Fungi - 1226; Plants - 4833; Viruses - 1435; Other Eukaryotes - 2982 (source: NCBI BLink).  protein_id AT4G12490.1p  transcript_id AT4G12490.1  protein_id AT4G12490.1p  transcript_id AT4G12490.1  
At4g12500	chr4:007414369	0.0	C/7414369-7414902	AT4G12500.1  CDS  gene_syn T1P17.90, T1P17_90  go_process lipid transport|GO:0006869||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; EXPRESSED IN: hypocotyl, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT4G12490.1); Has 10143 Blast hits to 3801 proteins in 494 species: Archae - 53; Bacteria - 1478; Metazoa - 1355; Fungi - 669; Plants - 3620; Viruses - 992; Other Eukaryotes - 1976 (source: NCBI BLink).  protein_id AT4G12500.1p  transcript_id AT4G12500.1  protein_id AT4G12500.1p  transcript_id AT4G12500.1  
At4g12510	chr4:007417414	0.0	C/7417414-7417803	AT4G12510.1  CDS  gene_syn T1P17.100, T1P17_100  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT4G12520.1); Has 534 Blast hits to 530 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 534; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G12510.1p  transcript_id AT4G12510.1  protein_id AT4G12510.1p  transcript_id AT4G12510.1  
At4g12520	chr4:007421279	0.0	C/7421279-7421668	AT4G12520.1  CDS  gene_syn T1P17.110  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT4G12510.1); Has 534 Blast hits to 530 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 534; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G12520.1p  transcript_id AT4G12520.1  protein_id AT4G12520.1p  transcript_id AT4G12520.1  
At4g12530	chr4:007428141	0.0	C/7428141-7428494	AT4G12530.1  CDS  gene_syn T1P17.120, T1P17_120  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, sepal; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT4G12520.1); Has 514 Blast hits to 510 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 514; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G12530.1p  transcript_id AT4G12530.1  protein_id AT4G12530.1p  transcript_id AT4G12530.1  
At4g12540	chr4:007431572	0.0	C/7431572-7431602,7431365-7431465,7431135-7431268,7430228-7431087,7429876-7430135	AT4G12540.1  CDS  gene_syn T1P17.130, T1P17_130  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 9 Blast hits to 8 proteins in 5 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G12540.1p  transcript_id AT4G12540.1  protein_id AT4G12540.1p  transcript_id AT4G12540.1  
At4g12545	chr4:007434260	0.0	W/7434260-7434586	AT4G12545.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_function molecular_function|GO:0003674||ND  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: AIR1; lipid binding (TAIR:AT4G12550.1); Has 516 Blast hits to 512 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 516; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G12545.1p  transcript_id AT4G12545.1  protein_id AT4G12545.1p  transcript_id AT4G12545.1  
At4g12550	chr4:007439176	0.0	W/7439176-7439511	AT4G12550.1  CDS  gene_syn AIR1, T1P17.140, T1P17_140  gene AIR1  function isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein that is related to a large family of proteins that consist of a proline-rich or glycine-rich N-terminus and a hydrophobic, possibly membrane spanning C-terminus.  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||ISS  go_process response to auxin stimulus|GO:0009733|10080694|IEP  go_process lateral root morphogenesis|GO:0010102|10080694|IEP  go_function lipid binding|GO:0008289||ISS  product AIR1; lipid binding  note AIR1; FUNCTIONS IN: lipid binding; INVOLVED IN: response to auxin stimulus, lateral root morphogenesis, lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT4G12545.1); Has 517 Blast hits to 513 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 517; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G12550.1p  transcript_id AT4G12550.1  protein_id AT4G12550.1p  transcript_id AT4G12550.1  
At4g12560	chr4:007441815	0.0	W/7441815-7443016,7443118-7443157	AT4G12560.1  CDS  gene_syn T1P17.150, T1P17_150  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22390.1); Has 1046 Blast hits to 1041 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1044; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G12560.1p  transcript_id AT4G12560.1  protein_id AT4G12560.1p  transcript_id AT4G12560.1  
At4g12560	chr4:007441815	0.0	W/7441815-7443016,7443118-7443157	AT4G12560.2  CDS  gene_syn T1P17.150, T1P17_150  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22390.1); Has 1046 Blast hits to 1041 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1044; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G12560.2p  transcript_id AT4G12560.2  protein_id AT4G12560.2p  transcript_id AT4G12560.2  
At4g12570	chr4:007445585	0.0	W/7445585-7447349,7447880-7448472,7448556-7448819	AT4G12570.1  CDS  gene_syn T1P17.160, T1P17_160, UBIQUITIN PROTEIN LIGASE 5, UPL5  gene UPL5  go_component intracellular|GO:0005622||IEA  go_process protein modification process|GO:0006464||IEA  go_function binding|GO:0005488||IEA  go_function acid-amino acid ligase activity|GO:0016881||IEA  go_process protein modification process|GO:0006464||ISS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UPL5 (UBIQUITIN PROTEIN LIGASE 5); acid-amino acid ligase/ binding / ubiquitin-protein ligase  note UBIQUITIN PROTEIN LIGASE 5 (UPL5); FUNCTIONS IN: ubiquitin-protein ligase activity, binding, acid-amino acid ligase activity; INVOLVED IN: protein modification process; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C-type lectin (InterPro:IPR001304), Ubiquitin (InterPro:IPR000626), HECT (InterPro:IPR000569), C-type lectin, conserved site (InterPro:IPR018378); BEST Arabidopsis thaliana protein match is: UPL1 (UBIQUITIN-PROTEIN LIGASE 1); ubiquitin-protein ligase (TAIR:AT1G55860.1); Has 9656 Blast hits to 6258 proteins in 570 species: Archae - 0; Bacteria - 6; Metazoa - 4838; Fungi - 1209; Plants - 1658; Viruses - 155; Other Eukaryotes - 1790 (source: NCBI BLink).  protein_id AT4G12570.1p  transcript_id AT4G12570.1  protein_id AT4G12570.1p  transcript_id AT4G12570.1  
At4g12580	chr4:007449374	0.0	C/7449374-7449679	AT4G12580.1  CDS  gene_syn T1P17.170, T1P17_170  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 21 Blast hits to 15 proteins in 4 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT4G12580.1p  transcript_id AT4G12580.1  protein_id AT4G12580.1p  transcript_id AT4G12580.1  
At4g12580	chr4:007449938	0.0	C/7449938-7449952,7449374-7449646	AT4G12580.2  CDS  gene_syn T1P17.170, T1P17_170  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage.  protein_id AT4G12580.2p  transcript_id AT4G12580.2  protein_id AT4G12580.2p  transcript_id AT4G12580.2  
At4g12590	chr4:007452825	0.0	C/7452825-7452976,7452621-7452714,7452251-7452370,7452121-7452169,7451835-7451934,7451639-7451700,7451497-7451555,7451291-7451395	AT4G12590.1  CDS  gene_syn T1P17.180, T1P17_180  go_component mitochondrion|GO:0005739|15276431|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, endoplasmic reticulum; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF850, transmembrane eukaryotic (InterPro:IPR008568); Has 287 Blast hits to 287 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 86; Plants - 26; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT4G12590.1p  transcript_id AT4G12590.1  protein_id AT4G12590.1p  transcript_id AT4G12590.1  
At4g12600	chr4:007453296	0.0	W/7453296-7453523,7454050-7454208	AT4G12600.1  CDS  gene_syn T1P17.190, T1P17_190  go_component ribonucleoprotein complex|GO:0030529||IEA  go_process ribosome biogenesis|GO:0042254||IEA  go_function RNA binding|GO:0003723||ISS  product ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein  note ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; FUNCTIONS IN: RNA binding; INVOLVED IN: ribosome biogenesis; LOCATED IN: ribonucleoprotein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group-like nuclear protein (InterPro:IPR002415), Ribosomal protein L7A/RS6 family (InterPro:IPR018492), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038), Ribosomal protein L7Ae conserved site (InterPro:IPR004037); BEST Arabidopsis thaliana protein match is: ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (TAIR:AT5G20160.1); Has 1329 Blast hits to 1329 proteins in 289 species: Archae - 226; Bacteria - 0; Metazoa - 458; Fungi - 187; Plants - 161; Viruses - 0; Other Eukaryotes - 297 (source: NCBI BLink).  protein_id AT4G12600.1p  transcript_id AT4G12600.1  protein_id AT4G12600.1p  transcript_id AT4G12600.1  
At4g12610	chr4:007454970	0.0	W/7454970-7455140,7455225-7455377,7455460-7455605,7455682-7456061,7456199-7456317,7456495-7456626,7456736-7456948,7457042-7457266,7457373-7457461,7457997-7458318	AT4G12610.2  CDS  gene_syn ATRAP74, RAP74, T1P17.200, T1P17_200  gene RAP74  go_process transcription initiation from RNA polymerase II promoter|GO:0006367||IEA  go_process positive regulation of transcription|GO:0045941||IEA  go_function DNA binding|GO:0003677||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  go_function catalytic activity|GO:0003824||IEA  go_function transcription activator activity|GO:0016563||IEA  go_component nucleus|GO:0005634|16905668|IDA  go_function transcription initiation factor activity|GO:0016986||ISS  product transcription initiation factor IIF alpha subunit (TFIIF-alpha) family protein  note RAP74; FUNCTIONS IN: RNA polymerase II transcription factor activity, DNA binding, transcription activator activity, transcription initiation factor activity, catalytic activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter, positive regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: shoot, guard cell, root; CONTAINS InterPro DOMAIN/s: Transcription initiation factor IIF, alpha subunit (InterPro:IPR008851), Transcription Factor IIF, Rap30/Rap74, interaction (InterPro:IPR011039).  protein_id AT4G12610.2p  transcript_id AT4G12610.2  protein_id AT4G12610.2p  transcript_id AT4G12610.2  
At4g12610	chr4:007454970	0.0	W/7454970-7455140,7455225-7455377,7455460-7455605,7455682-7456061,7456199-7456317,7456495-7456626,7456736-7456948,7457042-7457266,7457373-7457465	AT4G12610.1  CDS  gene_syn ATRAP74, RAP74, T1P17.200, T1P17_200  gene RAP74  go_component chloroplast|GO:0009507|15028209|IDA  go_process transcription initiation from RNA polymerase II promoter|GO:0006367||IEA  go_process positive regulation of transcription|GO:0045941||IEA  go_function DNA binding|GO:0003677||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  go_function catalytic activity|GO:0003824||IEA  go_function transcription activator activity|GO:0016563||IEA  go_component nucleus|GO:0005634|16905668|IDA  go_function transcription initiation factor activity|GO:0016986||ISS  product transcription initiation factor IIF alpha subunit (TFIIF-alpha) family protein  note RAP74; FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity, transcription activator activity, DNA binding, catalytic activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter, positive regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: shoot, guard cell, root; CONTAINS InterPro DOMAIN/s: Transcription initiation factor IIF, alpha subunit (InterPro:IPR008851), Transcription Factor IIF, Rap30/Rap74, interaction (InterPro:IPR011039); Has 30636 Blast hits to 18673 proteins in 813 species: Archae - 68; Bacteria - 4165; Metazoa - 11902; Fungi - 4990; Plants - 1473; Viruses - 421; Other Eukaryotes - 7617 (source: NCBI BLink).  protein_id AT4G12610.1p  transcript_id AT4G12610.1  protein_id AT4G12610.1p  transcript_id AT4G12610.1  
At4g12617	chr4:007459180	0.0	W/7459180-7459563	AT4G12617.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G05630.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G12617.1p  transcript_id AT4G12617.1  protein_id AT4G12617.1p  transcript_id AT4G12617.1  
At4g12620	chr4:007459812	0.0	C/7459812-7462253	AT4G12620.1  CDS  gene_syn ATORC1B, ORC1B, ORIGIN OF REPLICATION COMPLEX 1B, T1P17.210, T1P17_210, UNE13, UNFERTILIZED EMBRYO SAC 13  gene ORC1B  function Origin Recognition Complex subunit 1b. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with ORC2 and ORC5. Highly expressed in proliferating cells. Expression levels are independent of light regime.  go_component origin recognition complex|GO:0000808|16179646|ISS  go_component nucleus|GO:0005634||ISS  go_process DNA replication|GO:0006260|16179646|ISS  go_process DNA replication|GO:0006260||ISS  go_process double fertilization forming a zygote and endosperm|GO:0009567|15634699|IMP  go_process regulation of transcription|GO:0045449|19171893|IMP  go_function DNA binding|GO:0003677||ISS  go_function protein binding|GO:0005515|16179646|IPI  go_function double-stranded methylated DNA binding|GO:0010385|19171893|IDA  product ORC1B (ORIGIN OF REPLICATION COMPLEX 1B); DNA binding / double-stranded methylated DNA binding / protein binding  note ORIGIN OF REPLICATION COMPLEX 1B (ORC1B); FUNCTIONS IN: double-stranded methylated DNA binding, protein binding, DNA binding; INVOLVED IN: double fertilization forming a zygote and endosperm, DNA replication, regulation of transcription; LOCATED IN: origin recognition complex, nucleus; EXPRESSED IN: 8 plant structures; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Bromo adjacent region (InterPro:IPR001025), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: ORC1A (ORIGIN RECOGNITION COMPLEX 1); DNA binding / double-stranded methylated DNA binding (TAIR:AT4G14700.1); Has 4381 Blast hits to 4040 proteins in 274 species: Archae - 247; Bacteria - 2; Metazoa - 2782; Fungi - 548; Plants - 434; Viruses - 0; Other Eukaryotes - 368 (source: NCBI BLink).  protein_id AT4G12620.1p  transcript_id AT4G12620.1  protein_id AT4G12620.1p  transcript_id AT4G12620.1  
At4g12640	chr4:007462697	0.0	W/7462697-7462699,7462788-7463069,7465237-7466444,7466652-7467630	AT4G12640.1  CDS  gene_syn T1P17.230, T1P17_230  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue C-terminal (InterPro:IPR012921), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: FPA; RNA binding (TAIR:AT2G43410.4); Has 6679 Blast hits to 5578 proteins in 311 species: Archae - 8; Bacteria - 143; Metazoa - 3956; Fungi - 1074; Plants - 834; Viruses - 0; Other Eukaryotes - 664 (source: NCBI BLink).  protein_id AT4G12640.1p  transcript_id AT4G12640.1  protein_id AT4G12640.1p  transcript_id AT4G12640.1  
At4g12650	chr4:007468207	0.0	C/7468207-7470165	AT4G12650.1  CDS  gene_syn T1P17.240, T1P17_240  go_component vacuole|GO:0005773|14760709|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component integral to membrane|GO:0016021||ISS  product unknown protein  note LOCATED IN: integral to membrane, Golgi apparatus, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35160.1); Has 983 Blast hits to 980 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 434; Fungi - 144; Plants - 228; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).  protein_id AT4G12650.1p  transcript_id AT4G12650.1  protein_id AT4G12650.1p  transcript_id AT4G12650.1  
At4g12670	chr4:007472530	0.0	W/7472530-7473761,7473882-7473936,7474307-7474519	AT4G12670.1  CDS  gene_syn T20K18.20, T20K18_20  go_function DNA binding|GO:0003677||IEA  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: response to jasmonic acid stimulus, response to salicylic acid stimulus; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: TRFL10 (TRF-LIKE 10); DNA binding (TAIR:AT5G03780.1); Has 465 Blast hits to 449 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 225; Fungi - 17; Plants - 74; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT4G12670.1p  transcript_id AT4G12670.1  protein_id AT4G12670.1p  transcript_id AT4G12670.1  
At4g12680	chr4:007475104	0.0	W/7475104-7475197,7475495-7475603,7475691-7476020,7476114-7476402,7476778-7476884,7477009-7477174,7477249-7477444,7477543-7477783,7477979-7478174	AT4G12680.1  CDS  gene_syn T20K18.30, T20K18_30  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40640.1); Has 56 Blast hits to 56 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G12680.1p  transcript_id AT4G12680.1  protein_id AT4G12680.1p  transcript_id AT4G12680.1  
At4g12690	chr4:007480896	0.0	W/7480896-7481753	AT4G12690.1  CDS  gene_syn T20K18.40, T20K18_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF868, plant (InterPro:IPR008586); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04220.1); Has 144 Blast hits to 143 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G12690.1p  transcript_id AT4G12690.1  protein_id AT4G12690.1p  transcript_id AT4G12690.1  
At4g12700	chr4:007482643	0.0	C/7482643-7484328	AT4G12700.1  CDS  gene_syn T20K18.50, T20K18_50  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04280.1); Has 77 Blast hits to 77 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G12700.1p  transcript_id AT4G12700.1  protein_id AT4G12700.1p  transcript_id AT4G12700.1  
At4g12710	chr4:007486366	0.0	C/7486366-7486733,7485040-7485880	AT4G12710.1  CDS  gene_syn T20K18.60, T20K18_60  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product armadillo/beta-catenin repeat family protein  note armadillo/beta-catenin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein (TAIR:AT3G03440.1); Has 2674 Blast hits to 1835 proteins in 197 species: Archae - 0; Bacteria - 6; Metazoa - 839; Fungi - 532; Plants - 1037; Viruses - 0; Other Eukaryotes - 260 (source: NCBI BLink).  protein_id AT4G12710.1p  transcript_id AT4G12710.1  protein_id AT4G12710.1p  transcript_id AT4G12710.1  
At4g12720	chr4:007487716	0.0	W/7487716-7487859,7488005-7488070,7488155-7488295,7488368-7488445,7488854-7488904,7489007-7489041,7489125-7489236,7489336-7489557	AT4G12720.1  CDS  gene_syn Arabidopsis thaliana Nudix hydrolase homolog 7, AtNUDT7, GFG1, GROWTH FACTOR GENE 1, NUDT7, T20K18.70, T20K18_70  gene NUDT7  function Encodes a protein with ADP-ribose hydrolase activity. Negatively regulates EDS1-conditioned plant defense and programmed cell death.  go_component cytosol|GO:0005829|15878881|RCA  go_process response to oxidative stress|GO:0006979|16328543|IEP  go_process plant-type hypersensitive response|GO:0009626|16531493|IMP  go_process response to salt stress|GO:0009651|16328543|IEP  go_process defense response signaling pathway, resistance gene-dependent|GO:0009870|16531493|IMP  go_process response to ozone|GO:0010193|16328543|IEP  go_process defense response to bacterium|GO:0042742|17660350|IMP  go_function hydrolase activity|GO:0016787||ISS  go_function nucleoside-diphosphatase activity|GO:0017110|17660350|IDA  go_function protein homodimerization activity|GO:0042803|16154395|IDA  go_function ADP-ribose diphosphatase activity|GO:0047631|15878881|IDA  go_function ADP-ribose diphosphatase activity|GO:0047631|16154395|IDA  go_function NAD or NADH binding|GO:0051287|15878881|IDA  product NUDT7; ADP-ribose diphosphatase/ NAD or NADH binding / hydrolase/ nucleoside-diphosphatase/ protein homodimerization  note NUDT7; FUNCTIONS IN: ADP-ribose diphosphatase activity, hydrolase activity, NAD or NADH binding, protein homodimerization activity, nucleoside-diphosphatase activity; INVOLVED IN: in 6 processes; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), Anti-sense to fibroblast growth factor protein GFG (InterPro:IPR003293), NUDIX hydrolase, core (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: ATNUDT6 (Arabidopsis thaliana Nudix hydrolase homolog 6); ADP-ribose diphosphatase/ NAD or NADH binding / hydrolase (TAIR:AT2G04450.1); Has 1070 Blast hits to 1068 proteins in 203 species: Archae - 0; Bacteria - 362; Metazoa - 170; Fungi - 5; Plants - 89; Viruses - 0; Other Eukaryotes - 444 (source: NCBI BLink).  protein_id AT4G12720.1p  transcript_id AT4G12720.1  protein_id AT4G12720.1p  transcript_id AT4G12720.1  
At4g12720	chr4:007487716	0.0	W/7487716-7487859,7488005-7488070,7488155-7488295,7488368-7488445,7488854-7488904,7489007-7489041,7489125-7489236,7489336-7489557	AT4G12720.2  CDS  gene_syn Arabidopsis thaliana Nudix hydrolase homolog 7, AtNUDT7, GFG1, GROWTH FACTOR GENE 1, NUDT7, T20K18.70, T20K18_70  gene NUDT7  function Encodes a protein with ADP-ribose hydrolase activity. Negatively regulates EDS1-conditioned plant defense and programmed cell death.  go_component cytosol|GO:0005829|15878881|RCA  go_process response to oxidative stress|GO:0006979|16328543|IEP  go_process plant-type hypersensitive response|GO:0009626|16531493|IMP  go_process response to salt stress|GO:0009651|16328543|IEP  go_process defense response signaling pathway, resistance gene-dependent|GO:0009870|16531493|IMP  go_process response to ozone|GO:0010193|16328543|IEP  go_process defense response to bacterium|GO:0042742|17660350|IMP  go_function hydrolase activity|GO:0016787||ISS  go_function nucleoside-diphosphatase activity|GO:0017110|17660350|IDA  go_function protein homodimerization activity|GO:0042803|16154395|IDA  go_function ADP-ribose diphosphatase activity|GO:0047631|15878881|IDA  go_function ADP-ribose diphosphatase activity|GO:0047631|16154395|IDA  go_function NAD or NADH binding|GO:0051287|15878881|IDA  product NUDT7; ADP-ribose diphosphatase/ NAD or NADH binding / hydrolase/ nucleoside-diphosphatase/ protein homodimerization  note Arabidopsis thaliana Nudix hydrolase homolog 7 (AtNUDT7); FUNCTIONS IN: ADP-ribose diphosphatase activity, hydrolase activity, NAD or NADH binding, protein homodimerization activity, nucleoside-diphosphatase activity; INVOLVED IN: in 6 processes; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), Anti-sense to fibroblast growth factor protein GFG (InterPro:IPR003293), NUDIX hydrolase, core (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: ATNUDT6 (Arabidopsis thaliana Nudix hydrolase homolog 6); ADP-ribose diphosphatase/ NAD or NADH binding / hydrolase (TAIR:AT2G04450.1); Has 1070 Blast hits to 1068 proteins in 203 species: Archae - 0; Bacteria - 362; Metazoa - 170; Fungi - 5; Plants - 89; Viruses - 0; Other Eukaryotes - 444 (source: NCBI BLink).  protein_id AT4G12720.2p  transcript_id AT4G12720.2  protein_id AT4G12720.2p  transcript_id AT4G12720.2  
At4g12720	chr4:007487716	0.0	W/7487716-7487859,7488005-7488070,7488155-7488295,7488368-7488445,7488854-7488904,7489007-7489041,7489125-7489236,7489336-7489557	AT4G12720.3  CDS  gene_syn Arabidopsis thaliana Nudix hydrolase homolog 7, AtNUDT7, GFG1, GROWTH FACTOR GENE 1, NUDT7, T20K18.70, T20K18_70  gene NUDT7  function Encodes a protein with ADP-ribose hydrolase activity. Negatively regulates EDS1-conditioned plant defense and programmed cell death.  go_component cytosol|GO:0005829|15878881|RCA  go_process response to oxidative stress|GO:0006979|16328543|IEP  go_process plant-type hypersensitive response|GO:0009626|16531493|IMP  go_process response to salt stress|GO:0009651|16328543|IEP  go_process defense response signaling pathway, resistance gene-dependent|GO:0009870|16531493|IMP  go_process response to ozone|GO:0010193|16328543|IEP  go_process defense response to bacterium|GO:0042742|17660350|IMP  go_function hydrolase activity|GO:0016787||ISS  go_function nucleoside-diphosphatase activity|GO:0017110|17660350|IDA  go_function protein homodimerization activity|GO:0042803|16154395|IDA  go_function ADP-ribose diphosphatase activity|GO:0047631|15878881|IDA  go_function ADP-ribose diphosphatase activity|GO:0047631|16154395|IDA  go_function NAD or NADH binding|GO:0051287|15878881|IDA  product NUDT7; ADP-ribose diphosphatase/ NAD or NADH binding / hydrolase/ nucleoside-diphosphatase/ protein homodimerization  note Arabidopsis thaliana Nudix hydrolase homolog 7 (AtNUDT7); FUNCTIONS IN: ADP-ribose diphosphatase activity, hydrolase activity, NAD or NADH binding, protein homodimerization activity, nucleoside-diphosphatase activity; INVOLVED IN: in 6 processes; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), Anti-sense to fibroblast growth factor protein GFG (InterPro:IPR003293), NUDIX hydrolase, core (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: ATNUDT6 (Arabidopsis thaliana Nudix hydrolase homolog 6); ADP-ribose diphosphatase/ NAD or NADH binding / hydrolase (TAIR:AT2G04450.1); Has 1070 Blast hits to 1068 proteins in 203 species: Archae - 0; Bacteria - 362; Metazoa - 170; Fungi - 5; Plants - 89; Viruses - 0; Other Eukaryotes - 444 (source: NCBI BLink).  protein_id AT4G12720.3p  transcript_id AT4G12720.3  protein_id AT4G12720.3p  transcript_id AT4G12720.3  
At4g12730	chr4:007491598	0.0	C/7491598-7492809	AT4G12730.1  CDS  gene_syn FASCICLIN-LIKE ARABINOGALACTAN 2, FLA2, T20K18.80, T20K18_80  gene FLA2  function AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  product FLA2 (FASCICLIN-LIKE ARABINOGALACTAN 2)  note FASCICLIN-LIKE ARABINOGALACTAN 2 (FLA2); INVOLVED IN: response to cyclopentenone; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FLA1 (FASCICLIN-LIKE ARAB INOGALACTAN 1) (TAIR:AT5G55730.1); Has 491 Blast hits to 485 proteins in 47 species: Archae - 0; Bacteria - 6; Metazoa - 2; Fungi - 12; Plants - 467; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G12730.1p  transcript_id AT4G12730.1  protein_id AT4G12730.1p  transcript_id AT4G12730.1  
At4g12731	chr4:007493178	0.0	C/7493178-7493360	AT4G12731.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12735.1); Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G12731.1p  transcript_id AT4G12731.1  protein_id AT4G12731.1p  transcript_id AT4G12731.1  
At4g12735	chr4:007494003	0.0	C/7494003-7494185	AT4G12735.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12731.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G12735.1p  transcript_id AT4G12735.1  protein_id AT4G12735.1p  transcript_id AT4G12735.1  
At4g12740	chr4:007496991	0.0	C/7496991-7497596,7496600-7496640,7496189-7496204,7496087-7496146,7495875-7495994,7495692-7495789,7495070-7495605,7494578-7494993	AT4G12740.1  CDS  gene_syn T20K18.90, T20K18_90  go_process DNA repair|GO:0006281||IEA  go_process base-excision repair|GO:0006284||IEA  go_function catalytic activity|GO:0003824||IEA  go_function endonuclease activity|GO:0004519||IEA  go_function hydrolase activity|GO:0016787||IEA  go_function 4 iron, 4 sulfur cluster binding|GO:0051539||IEA  go_process base-excision repair|GO:0006284||ISS  product adenine-DNA glycosylase-related / MYH-related  note adenine-DNA glycosylase-related / MYH-related; FUNCTIONS IN: hydrolase activity, 4 iron, 4 sulfur cluster binding, catalytic activity, endonuclease activity; INVOLVED IN: DNA repair, base-excision repair; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), DNA glycosylase (InterPro:IPR011257), Endonuclease III-like, iron-sulphur cluster loop (InterPro:IPR003651), HhH-GPD domain (InterPro:IPR003265), NUDIX hydrolase, core (InterPro:IPR000086); Has 55163 Blast hits to 25264 proteins in 1738 species: Archae - 282; Bacteria - 6884; Metazoa - 21116; Fungi - 4587; Plants - 1560; Viruses - 859; Other Eukaryotes - 19875 (source: NCBI BLink).  protein_id AT4G12740.1p  transcript_id AT4G12740.1  protein_id AT4G12740.1p  transcript_id AT4G12740.1  
At4g12750	chr4:007503313	0.0	C/7503313-7503643,7502984-7503045,7502672-7502902,7502513-7502572,7502221-7502438,7502026-7502164,7501840-7501926,7501553-7501684,7501213-7501353,7500983-7501083,7500787-7500904,7500177-7500632,7499489-7499875,7498776-7499375,7498559-7498663,7498240-7498462,7498009-7498031	AT4G12750.1  CDS  gene_syn T20K18.100, T20K18_100  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700||IEA  go_function sequence-specific DNA binding|GO:0043565||IEA  product sequence-specific DNA binding / transcription factor  note sequence-specific DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DDT superfamily (InterPro:IPR018501), Homeobox (InterPro:IPR001356), DDT family (InterPro:IPR004022), DDT subgroup (InterPro:IPR018500); BEST Arabidopsis thaliana protein match is: HB-1 (homeobox-1); transcription factor (TAIR:AT1G28420.1); Has 70 Blast hits to 64 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT4G12750.1p  transcript_id AT4G12750.1  protein_id AT4G12750.1p  transcript_id AT4G12750.1  
At4g12760	chr4:007504876	0.0	W/7504876-7504968,7505088-7505180,7505265-7505493,7505577-7505668,7505747-7505854,7505930-7506091	AT4G12760.1  CDS  gene_syn T20K18.110, T20K18_110  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 52 Blast hits to 52 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G12760.1p  transcript_id AT4G12760.1  protein_id AT4G12760.1p  transcript_id AT4G12760.1  
At4g12770	chr4:007510795	0.0	C/7510795-7511408,7508156-7509599,7507928-7508072,7507717-7507817,7507551-7507616,7507234-7507323,7506949-7507125,7506736-7506774	AT4G12770.1  CDS  gene_syn T20K18.120, T20K18_120  go_component plasma membrane|GO:0005886|17317660|IDA  go_function heat shock protein binding|GO:0031072||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  product heat shock protein binding  note heat shock protein binding; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: male gametophyte, guard cell, cultured cell, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: heat shock protein binding (TAIR:AT4G12780.1); Has 66398 Blast hits to 37183 proteins in 1729 species: Archae - 174; Bacteria - 16090; Metazoa - 23481; Fungi - 6321; Plants - 3168; Viruses - 394; Other Eukaryotes - 16770 (source: NCBI BLink).  protein_id AT4G12770.1p  transcript_id AT4G12770.1  protein_id AT4G12770.1p  transcript_id AT4G12770.1  
At4g12780	chr4:007512200	0.0	W/7512200-7512825,7513759-7515229,7515313-7515457,7515560-7515660,7515767-7515832,7516099-7516188,7516292-7516468,7516617-7516655	AT4G12780.1  CDS  gene_syn T20K18.130, T20K18_130  go_function heat shock protein binding|GO:0031072||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product heat shock protein binding  note heat shock protein binding; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: heat shock protein binding (TAIR:AT4G12770.1); Has 78836 Blast hits to 40128 proteins in 1831 species: Archae - 193; Bacteria - 20666; Metazoa - 26952; Fungi - 6866; Plants - 3897; Viruses - 541; Other Eukaryotes - 19721 (source: NCBI BLink).  protein_id AT4G12780.1p  transcript_id AT4G12780.1  protein_id AT4G12780.1p  transcript_id AT4G12780.1  
At4g12790	chr4:007518848	0.0	C/7518848-7518892,7518643-7518751,7518477-7518558,7518248-7518333,7518003-7518106,7517780-7517910,7517602-7517695,7517467-7517522,7517280-7517388	AT4G12790.1  CDS  gene_syn T20K18.140, T20K18_140  go_function nucleotide binding|GO:0000166||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ATP binding|GO:0005524||ISS  product ATP-binding family protein  note ATP-binding family protein; FUNCTIONS IN: nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function, ATP binding (InterPro:IPR004130); BEST Arabidopsis thaliana protein match is: QQT1 (QUATRE-QUART 1); ATP binding / nucleotide binding (TAIR:AT5G22370.2); Has 1073 Blast hits to 1063 proteins in 199 species: Archae - 79; Bacteria - 0; Metazoa - 345; Fungi - 272; Plants - 80; Viruses - 0; Other Eukaryotes - 297 (source: NCBI BLink).  protein_id AT4G12790.1p  transcript_id AT4G12790.1  protein_id AT4G12790.1p  transcript_id AT4G12790.1  
At4g12790	chr4:007518848	0.0	C/7518848-7518892,7518643-7518751,7518477-7518558,7518248-7518333,7518003-7518106,7517780-7517910,7517602-7517695,7517467-7517522,7517280-7517388	AT4G12790.2  CDS  gene_syn T20K18.140, T20K18_140  go_function nucleotide binding|GO:0000166||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ATP binding|GO:0005524||ISS  product ATP-binding family protein  note ATP-binding family protein; FUNCTIONS IN: nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function, ATP binding (InterPro:IPR004130); BEST Arabidopsis thaliana protein match is: QQT1 (QUATRE-QUART 1); ATP binding / nucleotide binding (TAIR:AT5G22370.2); Has 1073 Blast hits to 1063 proteins in 199 species: Archae - 79; Bacteria - 0; Metazoa - 345; Fungi - 272; Plants - 80; Viruses - 0; Other Eukaryotes - 297 (source: NCBI BLink).  protein_id AT4G12790.2p  transcript_id AT4G12790.2  protein_id AT4G12790.2p  transcript_id AT4G12790.2  
At4g12790	chr4:007518848	0.0	C/7518848-7518892,7518643-7518751,7518477-7518558,7518248-7518333,7518003-7518106,7517780-7517910,7517602-7517695,7517467-7517522,7517280-7517388	AT4G12790.3  CDS  gene_syn T20K18.140, T20K18_140  go_function nucleotide binding|GO:0000166||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ATP binding|GO:0005524||ISS  product ATP-binding family protein  note ATP-binding family protein; FUNCTIONS IN: nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function, ATP binding (InterPro:IPR004130); BEST Arabidopsis thaliana protein match is: QQT1 (QUATRE-QUART 1); ATP binding / nucleotide binding (TAIR:AT5G22370.2); Has 1073 Blast hits to 1063 proteins in 199 species: Archae - 79; Bacteria - 0; Metazoa - 345; Fungi - 272; Plants - 80; Viruses - 0; Other Eukaryotes - 297 (source: NCBI BLink).  protein_id AT4G12790.3p  transcript_id AT4G12790.3  protein_id AT4G12790.3p  transcript_id AT4G12790.3  
At4g12790	chr4:007518848	0.0	C/7518848-7518892,7518643-7518751,7518477-7518558,7518248-7518333,7518003-7518106,7517780-7517910,7517602-7517695,7517467-7517522,7517280-7517388	AT4G12790.4  CDS  gene_syn T20K18.140, T20K18_140  go_function nucleotide binding|GO:0000166||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ATP binding|GO:0005524||ISS  product ATP-binding family protein  note ATP-binding family protein; FUNCTIONS IN: nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function, ATP binding (InterPro:IPR004130); BEST Arabidopsis thaliana protein match is: QQT1 (QUATRE-QUART 1); ATP binding / nucleotide binding (TAIR:AT5G22370.2); Has 1073 Blast hits to 1063 proteins in 199 species: Archae - 79; Bacteria - 0; Metazoa - 345; Fungi - 272; Plants - 80; Viruses - 0; Other Eukaryotes - 297 (source: NCBI BLink).  protein_id AT4G12790.4p  transcript_id AT4G12790.4  protein_id AT4G12790.4p  transcript_id AT4G12790.4  
At4g12790	chr4:007518848	0.0	C/7518848-7518892,7518643-7518751,7518477-7518558,7518248-7518333,7518003-7518106,7517780-7517910,7517602-7517695,7517467-7517522,7517280-7517388	AT4G12790.5  CDS  gene_syn T20K18.140, T20K18_140  go_function nucleotide binding|GO:0000166||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ATP binding|GO:0005524||ISS  product ATP-binding family protein  note ATP-binding family protein; FUNCTIONS IN: nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function, ATP binding (InterPro:IPR004130); BEST Arabidopsis thaliana protein match is: QQT1 (QUATRE-QUART 1); ATP binding / nucleotide binding (TAIR:AT5G22370.2).  protein_id AT4G12790.5p  transcript_id AT4G12790.5  protein_id AT4G12790.5p  transcript_id AT4G12790.5  
At4g12800	chr4:007521469	0.0	W/7521469-7521636,7522002-7522493	AT4G12800.1  CDS  gene_syn PSAL, PSI-L, T20K18.150, T20K18_150, photosystem I subunit L  gene PSAL  function Encodes subunit L of photosystem I reaction center.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process photosynthesis|GO:0015979||IEA  go_component photosystem I reaction center|GO:0009538||ISS  go_component plastoglobule|GO:0010287|16414959|IDA  go_process photosynthesis, light reaction|GO:0019684||ISS  go_function molecular_function|GO:0003674||ND  product PSAL (photosystem I subunit L)  note photosystem I subunit L (PSAL); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthesis, light reaction, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre, subunit XI PsaL (InterPro:IPR003757); Has 373 Blast hits to 373 proteins in 97 species: Archae - 0; Bacteria - 150; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 167 (source: NCBI BLink).  protein_id AT4G12800.1p  transcript_id AT4G12800.1  protein_id AT4G12800.1p  transcript_id AT4G12800.1  
At4g12810	chr4:007522831	0.0	C/7522831-7523979	AT4G12810.1  CDS  gene_syn T20K18.160, T20K18_160  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G12820.1); Has 188 Blast hits to 177 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 188; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G12810.1p  transcript_id AT4G12810.1  protein_id AT4G12810.1p  transcript_id AT4G12810.1  
At4g12820	chr4:007528809	0.0	C/7528809-7528890,7527048-7528294	AT4G12820.1  CDS  gene_syn T20K18.170, T20K18_170  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G12810.1); Has 203 Blast hits to 192 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 203; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G12820.1p  transcript_id AT4G12820.1  protein_id AT4G12820.1p  transcript_id AT4G12820.1  
At4g12825	chr4:007529471	0.0	W/7529471-7529758	AT4G12825.1  CDS  function Encodes a Protease inhibitor/seed storage/LTP family protein  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  product unknown protein  note INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: lipid transfer protein-related (TAIR:AT1G43666.1); Has 187 Blast hits to 185 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 187; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G12825.1p  transcript_id AT4G12825.1  protein_id AT4G12825.1p  transcript_id AT4G12825.1  
At4g12830	chr4:007531189	0.0	W/7531189-7531341,7531427-7531481,7531548-7531603,7531676-7531776,7531859-7531928,7531998-7532067,7532134-7532190,7532280-7532347,7532434-7532514,7532600-7532677,7532751-7532906,7533007-7533159,7533244-7533327	AT4G12830.1  CDS  gene_syn T20K18.180, T20K18_180  go_component chloroplast|GO:0009507|15028209|IDA  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT1G52510.2); Has 8452 Blast hits to 8450 proteins in 913 species: Archae - 58; Bacteria - 5118; Metazoa - 591; Fungi - 124; Plants - 417; Viruses - 0; Other Eukaryotes - 2144 (source: NCBI BLink).  protein_id AT4G12830.1p  transcript_id AT4G12830.1  protein_id AT4G12830.1p  transcript_id AT4G12830.1  
At4g12840	chr4:007535680	0.0	C/7535680-7535832,7535535-7535594,7535352-7535453,7535194-7535268,7534994-7535112,7534807-7534908,7534615-7534731,7534454-7534516,7534303-7534369,7534161-7534214,7533978-7534070,7533810-7533890,7533621-7533719	AT4G12840.1  CDS  gene_syn T20K18.190, T20K18_190  product unknown protein  note unknown protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G18530.1); Has 182 Blast hits to 176 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 180; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G12840.1p  transcript_id AT4G12840.1  protein_id AT4G12840.1p  transcript_id AT4G12840.1  
At4g12840	chr4:007536234	0.0	C/7536234-7536263,7535680-7535802,7535535-7535594,7535352-7535453,7535194-7535268,7534994-7535112,7534807-7534908,7534615-7534731,7534454-7534516,7534303-7534369,7534161-7534214,7533978-7534070,7533810-7533890,7533621-7533719	AT4G12840.2  CDS  gene_syn T20K18.190, T20K18_190  product unknown protein  note unknown protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G18530.1).  protein_id AT4G12840.2p  transcript_id AT4G12840.2  protein_id AT4G12840.2p  transcript_id AT4G12840.2  
At4g12850	chr4:007537065	0.0	W/7537065-7537481	AT4G12850.2  CDS  gene_syn T20K18.200, T20K18_200  go_component cellular_component|GO:0005575||ND  go_process response to red or far red light|GO:0009639||ISS  go_function molecular_function|GO:0003674||ND  product far-red impaired responsive family protein / FAR1 family protein  note far-red impaired responsive family protein / FAR1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcription factor, FAR1-related (InterPro:IPR004330); BEST Arabidopsis thaliana protein match is: far-red impaired responsive family protein / FAR1 family protein (TAIR:AT2G43280.1); Has 419 Blast hits to 388 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 417; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G12850.2p  transcript_id AT4G12850.2  protein_id AT4G12850.2p  transcript_id AT4G12850.2  
At4g12850	chr4:007537068	0.0	W/7537068-7537424,7538082-7538276	AT4G12850.1  CDS  gene_syn T20K18.200, T20K18_200  go_component cellular_component|GO:0005575||ND  go_process response to red or far red light|GO:0009639||ISS  go_function molecular_function|GO:0003674||ND  product far-red impaired responsive family protein / FAR1 family protein  note far-red impaired responsive family protein / FAR1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcription factor, FAR1-related (InterPro:IPR004330); BEST Arabidopsis thaliana protein match is: far-red impaired responsive family protein / FAR1 family protein (TAIR:AT2G43280.1); Has 430 Blast hits to 395 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 428; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G12850.1p  transcript_id AT4G12850.1  protein_id AT4G12850.1p  transcript_id AT4G12850.1  
At4g12860	chr4:007538444	0.0	C/7538444-7538902	AT4G12860.1  CDS  gene_syn T20K18.210, T20K18_210, UNE14, unfertilized embryo sac 14  gene UNE14  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_process double fertilization forming a zygote and endosperm|GO:0009567|15634699|IMP  go_function calcium ion binding|GO:0005509||ISS  product UNE14 (unfertilized embryo sac 14); calcium ion binding  note unfertilized embryo sac 14 (UNE14); FUNCTIONS IN: calcium ion binding; INVOLVED IN: double fertilization forming a zygote and endosperm; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Parvalbumin (InterPro:IPR008080), EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: AGD11 (ARF-GAP domain 11); calcium ion binding (TAIR:AT3G07490.1); Has 19324 Blast hits to 13791 proteins in 1309 species: Archae - 0; Bacteria - 152; Metazoa - 9277; Fungi - 3084; Plants - 3378; Viruses - 0; Other Eukaryotes - 3433 (source: NCBI BLink).  protein_id AT4G12860.1p  transcript_id AT4G12860.1  protein_id AT4G12860.1p  transcript_id AT4G12860.1  
At4g12870	chr4:007542285	0.0	W/7542285-7542545,7542668-7542733,7542833-7542958,7543066-7543158,7543278-7543421	AT4G12870.1  CDS  gene_syn T20K18.220, T20K18_220  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||ISS  product gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein  note gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein; FUNCTIONS IN: catalytic activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Gamma interferon inducible lysosomal thiol reductase GILT (InterPro:IPR004911); BEST Arabidopsis thaliana protein match is: gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein (TAIR:AT4G12900.1); Has 343 Blast hits to 340 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 264; Fungi - 2; Plants - 50; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT4G12870.1p  transcript_id AT4G12870.1  protein_id AT4G12870.1p  transcript_id AT4G12870.1  
At4g12880	chr4:007545052	0.0	C/7545052-7545226,7544572-7544822	AT4G12880.1  CDS  gene_syn T20K18.230, T20K18_230  go_component apoplast|GO:0048046|18538804|IDA  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function copper ion binding|GO:0005507||ISS  product plastocyanin-like domain-containing protein  note plastocyanin-like domain-containing protein; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: plastocyanin-like domain-containing protein (TAIR:AT5G15350.1); Has 714 Blast hits to 705 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 714; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G12880.1p  transcript_id AT4G12880.1  protein_id AT4G12880.1p  transcript_id AT4G12880.1  
At4g12890	chr4:007546411	0.0	W/7546411-7546689,7546773-7546838,7546938-7547060,7547175-7547267,7547339-7547476	AT4G12890.1  CDS  gene_syn T20K18.240, T20K18_240  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein  note gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Gamma interferon inducible lysosomal thiol reductase GILT (InterPro:IPR004911); BEST Arabidopsis thaliana protein match is: gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein (TAIR:AT4G12900.1); Has 350 Blast hits to 347 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 265; Fungi - 7; Plants - 50; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT4G12890.1p  transcript_id AT4G12890.1  protein_id AT4G12890.1p  transcript_id AT4G12890.1  
At4g12900	chr4:007548820	0.0	W/7548820-7549092,7549245-7549310,7549403-7549525,7549621-7549713,7549806-7549946	AT4G12900.1  CDS  gene_syn F25G13.3, F25G13_3  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||ISS  product gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein  note gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein; FUNCTIONS IN: catalytic activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Gamma interferon inducible lysosomal thiol reductase GILT (InterPro:IPR004911); BEST Arabidopsis thaliana protein match is: gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein (TAIR:AT4G12890.1); Has 344 Blast hits to 341 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 265; Fungi - 4; Plants - 50; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT4G12900.1p  transcript_id AT4G12900.1  protein_id AT4G12900.1p  transcript_id AT4G12900.1  
At4g12910	chr4:007552897	0.0	C/7552897-7553051,7552595-7552817,7552389-7552511,7552205-7552307,7552087-7552124,7551896-7551997,7551735-7551815,7551414-7551650,7551270-7551335,7551074-7551195,7550876-7550989,7550747-7550792,7550576-7550659	AT4G12910.1  CDS  gene_syn F25G13.7, F25G13_7, scpl20, serine carboxypeptidase-like 20  gene scpl20  go_component vacuole|GO:0005773|15539469|IDA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl20 (serine carboxypeptidase-like 20); serine-type carboxypeptidase  note serine carboxypeptidase-like 20 (scpl20); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl21 (serine carboxypeptidase-like 21); serine-type carboxypeptidase (TAIR:AT3G25420.1); Has 2740 Blast hits to 2626 proteins in 326 species: Archae - 0; Bacteria - 214; Metazoa - 579; Fungi - 566; Plants - 1012; Viruses - 0; Other Eukaryotes - 369 (source: NCBI BLink).  protein_id AT4G12910.1p  transcript_id AT4G12910.1  protein_id AT4G12910.1p  transcript_id AT4G12910.1  
At4g12915	chr4:007558228	0.0	C/7558228-7559772	AT4G12915.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.4e-20 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At4g12917	chr4:007563157	0.0	C/7563157-7563847	AT4G12917.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G12917.1  
At4g12920	chr4:007568286	0.0	W/7568286-7569455	AT4G12920.1  CDS  gene_syn F25G13.10, F25G13_10  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: aspartyl protease family (TAIR:AT4G30040.1); Has 972 Blast hits to 967 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 36; Plants - 904; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT4G12920.1p  transcript_id AT4G12920.1  protein_id AT4G12920.1p  transcript_id AT4G12920.1  
At4g12930	chr4:007573281	0.0	C/7573281-7573706	AT4G12930.1  CDS  gene_syn F25G13.20, F25G13_20  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, male gametophyte, sepal, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28930.1); Has 10 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G12930.1p  transcript_id AT4G12930.1  protein_id AT4G12930.1p  transcript_id AT4G12930.1  
At4g12940	chr4:007574172	0.0	W/7574172-7574627	AT4G12940.1  CDS  gene_syn F25G13.30, F25G13_30  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12930.1); Has 10 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G12940.1p  transcript_id AT4G12940.1  protein_id AT4G12940.1p  transcript_id AT4G12940.1  
At4g12950	chr4:007576642	0.0	W/7576642-7577172	AT4G12950.1  CDS  gene_syn F25G13.40, F25G13_40  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; LOCATED IN: anchored to membrane; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29980.1); Has 31 Blast hits to 31 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G12950.1p  transcript_id AT4G12950.1  protein_id AT4G12950.1p  transcript_id AT4G12950.1  
At4g12960	chr4:007583301	0.0	W/7583301-7583558,7583674-7583739,7583806-7583958,7584039-7584131,7584251-7584412	AT4G12960.2  CDS  gene_syn F25G13.50, F25G13_50  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein  note gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Gamma interferon inducible lysosomal thiol reductase GILT (InterPro:IPR004911); BEST Arabidopsis thaliana protein match is: gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein (TAIR:AT4G12900.1).  protein_id AT4G12960.2p  transcript_id AT4G12960.2  protein_id AT4G12960.2p  transcript_id AT4G12960.2  
At4g12960	chr4:007583301	0.0	W/7583301-7583558,7583674-7583739,7583836-7583958,7584039-7584131,7584251-7584412	AT4G12960.1  CDS  gene_syn F25G13.50, F25G13_50  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein  note gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Gamma interferon inducible lysosomal thiol reductase GILT (InterPro:IPR004911); BEST Arabidopsis thaliana protein match is: gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein (TAIR:AT4G12900.1); Has 349 Blast hits to 346 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 265; Fungi - 5; Plants - 52; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT4G12960.1p  transcript_id AT4G12960.1  protein_id AT4G12960.1p  transcript_id AT4G12960.1  
At4g12970	chr4:007586708	0.0	C/7586708-7586798,7586514-7586572,7586244-7586402	AT4G12970.1  CDS  gene_syn F25G13.60, F25G13_60  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G12970.1p  transcript_id AT4G12970.1  protein_id AT4G12970.1p  transcript_id AT4G12970.1  
At4g12980	chr4:007590418	0.0	C/7590418-7591074,7590087-7590341,7589670-7589942	AT4G12980.1  CDS  gene_syn F25G13.70, F25G13_70  go_component membrane|GO:0016020|10080694|ISS  go_process multicellular organismal development|GO:0007275||ISS  product auxin-responsive protein, putative  note auxin-responsive protein, putative; INVOLVED IN: multicellular organismal development; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP037471 (InterPro:IPR017214), Protein of unknown function DUF568, DOMON-like (InterPro:IPR007613), DOMON related (InterPro:IPR005018), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT3G25290.2); Has 396 Blast hits to 396 proteins in 70 species: Archae - 0; Bacteria - 2; Metazoa - 74; Fungi - 58; Plants - 255; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT4G12980.1p  transcript_id AT4G12980.1  protein_id AT4G12980.1p  transcript_id AT4G12980.1  
At4g12990	chr4:007595044	0.0	C/7595044-7595334	AT4G12990.1  CDS  gene_syn F25G13.80, F25G13_80  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G12990.1p  transcript_id AT4G12990.1  protein_id AT4G12990.1p  transcript_id AT4G12990.1  
At4g13000	chr4:007598099	0.0	C/7598099-7599217	AT4G13000.1  CDS  gene_syn F25G13.90, F25G13_90  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: AGC2-1 (OXIDATIVE SIGNAL-INDUCIBLE1); kinase (TAIR:AT3G25250.1); Has 67371 Blast hits to 66556 proteins in 2153 species: Archae - 31; Bacteria - 7094; Metazoa - 29785; Fungi - 7736; Plants - 7701; Viruses - 230; Other Eukaryotes - 14794 (source: NCBI BLink).  protein_id AT4G13000.1p  transcript_id AT4G13000.1  protein_id AT4G13000.1p  transcript_id AT4G13000.1  
At4g13010	chr4:007600682	0.0	W/7600682-7600747,7601464-7601605,7601708-7601799,7601878-7602567	AT4G13010.1  CDS  gene_syn F25G13.100, F25G13_100  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function zinc ion binding|GO:0008270||ISS  product oxidoreductase, zinc-binding dehydrogenase family protein  note oxidoreductase, zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: oxidoreductase, zinc-binding dehydrogenase family protein (TAIR:AT1G23740.1); Has 22117 Blast hits to 22019 proteins in 1513 species: Archae - 254; Bacteria - 11468; Metazoa - 1023; Fungi - 2323; Plants - 851; Viruses - 3; Other Eukaryotes - 6195 (source: NCBI BLink).  protein_id AT4G13010.1p  transcript_id AT4G13010.1  protein_id AT4G13010.1p  transcript_id AT4G13010.1  
At4g13020	chr4:007603947	0.0	W/7603947-7603954,7604047-7604125,7604204-7604272,7604357-7604446,7604542-7604680,7604768-7604870,7604973-7605025,7605214-7605280,7605386-7605494,7605581-7605646,7605760-7605828,7605918-7605975,7606068-7606172,7606262-7606296,7606382-7606427,7606523-7606601,7606680-7606812	AT4G13020.1  CDS  gene_syn F25G13.110, F25G13_110, MHK, PROTEIN KINASE  gene MHK  function Encodes a member of the cdc2+ family of protein kinases MHK. Similar to the mak genes of rats. mak encodes a protein kinase that may play a role in spermatogenesis.  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product MHK; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note MHK; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT4G19110.2); Has 89459 Blast hits to 88432 proteins in 3020 species: Archae - 50; Bacteria - 7683; Metazoa - 40381; Fungi - 8426; Plants - 15127; Viruses - 436; Other Eukaryotes - 17356 (source: NCBI BLink).  protein_id AT4G13020.1p  transcript_id AT4G13020.1  protein_id AT4G13020.1p  transcript_id AT4G13020.1  
At4g13020	chr4:007603947	0.0	W/7603947-7603954,7604047-7604125,7604204-7604272,7604357-7604446,7604542-7604680,7604768-7604870,7604973-7605025,7605214-7605280,7605386-7605494,7605581-7605646,7605760-7605828,7605918-7605975,7606068-7606172,7606262-7606296,7606382-7606427,7606523-7606601,7606690-7606732	AT4G13020.4  CDS  gene_syn F25G13.110, F25G13_110, MHK, PROTEIN KINASE  gene MHK  function Encodes a member of the cdc2+ family of protein kinases MHK. Similar to the mak genes of rats. mak encodes a protein kinase that may play a role in spermatogenesis.  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product MHK; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note MHK; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT4G19110.2); Has 90133 Blast hits to 89093 proteins in 3022 species: Archae - 50; Bacteria - 7750; Metazoa - 40617; Fungi - 8533; Plants - 15275; Viruses - 436; Other Eukaryotes - 17472 (source: NCBI BLink).  protein_id AT4G13020.4p  transcript_id AT4G13020.4  protein_id AT4G13020.4p  transcript_id AT4G13020.4  
At4g13020	chr4:007604015	0.0	W/7604015-7604125,7604204-7604272,7604357-7604446,7604542-7604680,7604768-7604870,7604973-7605025,7605214-7605280,7605386-7605494,7605581-7605646,7605760-7605828,7605918-7605975,7606068-7606172,7606262-7606296,7606382-7606427,7606523-7606601,7606677-7606812	AT4G13020.3  CDS  gene_syn F25G13.110, F25G13_110, MHK, PROTEIN KINASE  gene MHK  function Encodes a member of the cdc2+ family of protein kinases MHK. Similar to the mak genes of rats. mak encodes a protein kinase that may play a role in spermatogenesis.  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product MHK; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note MHK; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT4G19110.2); Has 89445 Blast hits to 88420 proteins in 3016 species: Archae - 50; Bacteria - 7656; Metazoa - 40398; Fungi - 8424; Plants - 15122; Viruses - 436; Other Eukaryotes - 17359 (source: NCBI BLink).  protein_id AT4G13020.3p  transcript_id AT4G13020.3  protein_id AT4G13020.3p  transcript_id AT4G13020.3  
At4g13020	chr4:007604015	0.0	W/7604015-7604125,7604204-7604272,7604357-7604446,7604542-7604680,7604768-7604870,7604973-7605025,7605214-7605280,7605386-7605494,7605581-7605646,7605760-7605828,7605918-7605975,7606068-7606172,7606262-7606296,7606382-7606427,7606523-7606601,7606680-7606812	AT4G13020.2  CDS  gene_syn F25G13.110, F25G13_110, MHK, PROTEIN KINASE  gene MHK  function Encodes a member of the cdc2+ family of protein kinases MHK. Similar to the mak genes of rats. mak encodes a protein kinase that may play a role in spermatogenesis.  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product MHK; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note MHK; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT4G19110.2); Has 89440 Blast hits to 88415 proteins in 3016 species: Archae - 50; Bacteria - 7656; Metazoa - 40407; Fungi - 8427; Plants - 15114; Viruses - 436; Other Eukaryotes - 17350 (source: NCBI BLink).  protein_id AT4G13020.2p  transcript_id AT4G13020.2  protein_id AT4G13020.2p  transcript_id AT4G13020.2  
At4g13030	chr4:007607400	0.0	W/7607400-7607424,7607497-7607557,7607661-7607834,7607953-7608122,7608205-7608385,7608462-7608649,7608723-7608848,7608935-7609047,7609249-7609656	AT4G13030.1  CDS  gene_syn F25G13.120, F25G13_120  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage; Has 48 Blast hits to 48 proteins in 22 species: Archae - 0; Bacteria - 20; Metazoa - 11; Fungi - 2; Plants - 14; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G13030.1p  transcript_id AT4G13030.1  protein_id AT4G13030.1p  transcript_id AT4G13030.1  
At4g13030	chr4:007607400	0.0	W/7607400-7607424,7607506-7607557,7607658-7607834,7607953-7608122,7608205-7608385,7608462-7608649,7608723-7608848,7608935-7609047,7609249-7609656	AT4G13030.2  CDS  gene_syn F25G13.120, F25G13_120  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage; Has 48 Blast hits to 48 proteins in 22 species: Archae - 0; Bacteria - 20; Metazoa - 11; Fungi - 2; Plants - 14; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G13030.2p  transcript_id AT4G13030.2  protein_id AT4G13030.2p  transcript_id AT4G13030.2  
At4g13040	chr4:007613720	0.0	W/7613720-7613751,7614072-7614142,7614220-7614350,7614560-7614668,7614768-7614948,7615021-7615142,7615216-7615310	AT4G13040.3  CDS  gene_syn F25G13.130, F25G13_130  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_function transcription factor activity|GO:0003700||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor family protein  note AP2 domain-containing transcription factor family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471).  protein_id AT4G13040.3p  transcript_id AT4G13040.3  protein_id AT4G13040.3p  transcript_id AT4G13040.3  
At4g13040	chr4:007614100	0.0	W/7614100-7614142,7614220-7614350,7614560-7614668,7614768-7614948,7615021-7615142,7615216-7615310	AT4G13040.1  CDS  gene_syn F25G13.130, F25G13_130  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_function transcription factor activity|GO:0003700||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor family protein  note AP2 domain-containing transcription factor family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); Has 171 Blast hits to 162 proteins in 45 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 140; Viruses - 1; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT4G13040.1p  transcript_id AT4G13040.1  protein_id AT4G13040.1p  transcript_id AT4G13040.1  
At4g13040	chr4:007614292	0.0	W/7614292-7614350,7614560-7614615,7614768-7614948,7615021-7615142,7615216-7615310	AT4G13040.2  CDS  gene_syn F25G13.130, F25G13_130  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_function transcription factor activity|GO:0003700||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor family protein  note AP2 domain-containing transcription factor family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); Has 159 Blast hits to 152 proteins in 43 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT4G13040.2p  transcript_id AT4G13040.2  protein_id AT4G13040.2p  transcript_id AT4G13040.2  
At4g13050	chr4:007617739	0.0	W/7617739-7618068,7618190-7618323,7618397-7618510,7618668-7618763,7618838-7618994,7619083-7619355	AT4G13050.1  CDS  gene_syn F25G13.140, F25G13_140  go_component chloroplast|GO:0009507||IEA  go_process fatty acid biosynthetic process|GO:0006633||IEA  go_function acyl carrier activity|GO:0000036||IEA  go_process fatty acid biosynthetic process|GO:0006633||ISS  go_function acyl carrier activity|GO:0000036||ISS  product acyl-(acyl carrier protein) thioesterase, putative / acyl-ACP thioesterase, putative / oleoyl-(acyl-carrier protein) hydrolase, putative / S-acyl fatty acid synthase thioesterase, putative  note acyl-(acyl carrier protein) thioesterase, putative / acyl-ACP thioesterase, putative / oleoyl-(acyl-carrier protein) hydrolase, putative / S-acyl fatty acid synthase thioesterase, putative; FUNCTIONS IN: acyl carrier activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acyl-ACP thioesterase (InterPro:IPR002864); BEST Arabidopsis thaliana protein match is: AtFaTA (Arabidopsis FatA acyl-ACP thioesterase); acyl carrier/ acyl-[acyl-carrier-protein] hydrolase (TAIR:AT3G25110.1); Has 601 Blast hits to 601 proteins in 228 species: Archae - 0; Bacteria - 383; Metazoa - 2; Fungi - 0; Plants - 209; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT4G13050.1p  transcript_id AT4G13050.1  protein_id AT4G13050.1p  transcript_id AT4G13050.1  
At4g13060	chr4:007619935	0.0	C/7619935-7620942	AT4G13060.1  CDS  gene_syn F25G13.150, F25G13_150  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G21240.1); Has 375 Blast hits to 369 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 375; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G13060.1p  transcript_id AT4G13060.1  protein_id AT4G13060.1p  transcript_id AT4G13060.1  
At4g13070	chr4:007622993	0.0	C/7622993-7623051,7622518-7622914,7622026-7622430,7621780-7621950	AT4G13070.1  CDS  gene_syn F25G13.160, F25G13_160  go_function RNA binding|GO:0003723||IEA  go_process biological_process|GO:0008150||ND  product group II intron splicing factor CRS1-related  note group II intron splicing factor CRS1-related; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA binding (TAIR:AT2G28480.1); Has 214 Blast hits to 185 proteins in 20 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT4G13070.1p  transcript_id AT4G13070.1  protein_id AT4G13070.1p  transcript_id AT4G13070.1  
At4g13075	chr4:007624884	0.0	C/7624884-7625114	AT4G13075.1  CDS  gene_syn RALF-LIKE 30, RALFL30  gene RALFL30  function Rapid alkalinization factor (RALF) family protein. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  go_component apoplast|GO:0048046|12611624|ISS  go_process cell-cell signaling|GO:0007267|12611624|ISS  go_function signal transducer activity|GO:0004871|12611624|TAS  product RALFL30 (RALF-LIKE 30); signal transducer  note RALF-LIKE 30 (RALFL30); FUNCTIONS IN: signal transducer activity; INVOLVED IN: cell-cell signaling; LOCATED IN: apoplast; CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALFL26 (ralf-like 26); signal transducer (TAIR:AT3G25170.1); Has 18 Blast hits to 18 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G13075.1p  transcript_id AT4G13075.1  protein_id AT4G13075.1p  transcript_id AT4G13075.1  
At4g13080	chr4:007628169	0.0	C/7628169-7628367,7627980-7628080,7627512-7627702,7626612-7626999	AT4G13080.1  CDS  gene_syn F25G13.170, F25G13_170  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process cellular glucan metabolic process|GO:0006073||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762||IEA  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative  note xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, apoplast, cell wall; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative (TAIR:AT4G13090.1); Has 1399 Blast hits to 1391 proteins in 215 species: Archae - 0; Bacteria - 221; Metazoa - 0; Fungi - 297; Plants - 798; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT4G13080.1p  transcript_id AT4G13080.1  protein_id AT4G13080.1p  transcript_id AT4G13080.1  
At4g13090	chr4:007632684	0.0	C/7632684-7632870,7632349-7632449,7632040-7632233,7631535-7631931	AT4G13090.1  CDS  gene_syn F25G13.180, F25G13_180  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process cellular glucan metabolic process|GO:0006073||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762||IEA  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative  note xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, cell wall, apoplast; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16, active site (InterPro:IPR008263), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative (TAIR:AT4G13080.1); Has 1368 Blast hits to 1360 proteins in 214 species: Archae - 0; Bacteria - 210; Metazoa - 0; Fungi - 289; Plants - 797; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT4G13090.1p  transcript_id AT4G13090.1  protein_id AT4G13090.1p  transcript_id AT4G13090.1  
At4g13095	chr4:007634993	0.0	W/7634993-7635044,7635302-7635483	AT4G13095.1  CDS  gene_syn LCR37, Low-molecular-weight cysteine-rich 37  gene LCR37  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR37 (Low-molecular-weight cysteine-rich 37)  note Low-molecular-weight cysteine-rich 37 (LCR37); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: LCR24 (Low-molecular-weight cysteine-rich 24) (TAIR:AT4G29285.1); Has 23 Blast hits to 23 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G13095.1p  transcript_id AT4G13095.1  protein_id AT4G13095.1p  transcript_id AT4G13095.1  
At4g13100	chr4:007637037	0.0	C/7637037-7637507,7636547-7636846	AT4G13100.3  CDS  gene_syn F25G13.190, F25G13_190  go_function protein binding|GO:0005515||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, calmodulin binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G25030.2); Has 401 Blast hits to 397 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 203; Fungi - 12; Plants - 97; Viruses - 14; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT4G13100.3p  transcript_id AT4G13100.3  protein_id AT4G13100.3p  transcript_id AT4G13100.3  
At4g13100	chr4:007637037	0.0	C/7637037-7637507,7636547-7636855	AT4G13100.1  CDS  gene_syn F25G13.190, F25G13_190  go_function protein binding|GO:0005515||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, calmodulin binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G25030.2); Has 425 Blast hits to 420 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 220; Fungi - 18; Plants - 99; Viruses - 14; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT4G13100.1p  transcript_id AT4G13100.1  protein_id AT4G13100.1p  transcript_id AT4G13100.1  
At4g13100	chr4:007639014	0.0	C/7639014-7639037,7637663-7637726,7637037-7637446,7636547-7636846	AT4G13100.2  CDS  gene_syn F25G13.190, F25G13_190  go_function protein binding|GO:0005515||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, calmodulin binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G25030.2); Has 401 Blast hits to 397 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 203; Fungi - 12; Plants - 97; Viruses - 14; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT4G13100.2p  transcript_id AT4G13100.2  protein_id AT4G13100.2p  transcript_id AT4G13100.2  
At4g13110	chr4:007641507	0.0	W/7641507-7642457	AT4G13110.1  CDS  gene_syn F25G13.200, F25G13_200  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product BSD domain-containing protein  note BSD domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT1G03350.1); Has 343 Blast hits to 333 proteins in 106 species: Archae - 0; Bacteria - 1; Metazoa - 193; Fungi - 89; Plants - 43; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT4G13110.1p  transcript_id AT4G13110.1  protein_id AT4G13110.1p  transcript_id AT4G13110.1  
At4g13120	chr4:007644089	0.0	C/7644089-7646587	AT4G13120.1  mRNA_TE_gene  pseudo  gene_syn F17N18.10, F17N18_10  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 2.6e-50 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At4g13130	chr4:007647389	0.0	W/7647389-7649692	AT4G13130.1  CDS  gene_syn F17N18.20, F17N18_20  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: leaf whorl, hypocotyl, root, pollen tube; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT4G02540.1); Has 1234 Blast hits to 488 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 1224; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G13130.1p  transcript_id AT4G13130.1  protein_id AT4G13130.1p  transcript_id AT4G13130.1  
At4g13150	chr4:007652119	0.0	C/7652119-7652237,7651621-7651926,7651463-7651535,7651263-7651375,7651078-7651162,7650923-7650995,7650791-7650846,7650652-7650717,7650489-7650554,7650326-7650412	AT4G13150.1  CDS  gene_syn F17N18.40, F17N18_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, pedicel, leaf; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, LP.02 two leaves visible; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G13150.1p  transcript_id AT4G13150.1  protein_id AT4G13150.1p  transcript_id AT4G13150.1  
At4g13160	chr4:007653985	0.0	W/7653985-7654833	AT4G13160.1  CDS  gene_syn F17N18.50, F17N18_50  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13630.1); Has 3849 Blast hits to 2651 proteins in 230 species: Archae - 12; Bacteria - 138; Metazoa - 1303; Fungi - 201; Plants - 240; Viruses - 104; Other Eukaryotes - 1851 (source: NCBI BLink).  protein_id AT4G13160.1p  transcript_id AT4G13160.1  protein_id AT4G13160.1p  transcript_id AT4G13160.1  
At4g13170	chr4:007656271	0.0	C/7656271-7656542,7655591-7655707,7655408-7655495,7655133-7655276	AT4G13170.1  CDS  gene_syn F17N18.60, F17N18_60  go_component membrane|GO:0016020|17432890|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L13A (RPL13aC)  note 60S ribosomal protein L13A (RPL13aC); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, ribosome, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13 (InterPro:IPR005822), Ribosomal protein L13, eukaryotic/archaeal (InterPro:IPR005755); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L13A (RPL13aD) (TAIR:AT5G48760.2); Has 1401 Blast hits to 1401 proteins in 423 species: Archae - 212; Bacteria - 236; Metazoa - 292; Fungi - 130; Plants - 165; Viruses - 0; Other Eukaryotes - 366 (source: NCBI BLink).  protein_id AT4G13170.1p  transcript_id AT4G13170.1  protein_id AT4G13170.1p  transcript_id AT4G13170.1  
At4g13180	chr4:007657373	0.0	C/7657373-7658164	AT4G13180.1  CDS  gene_syn F17N18.70, F17N18_70  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process response to arsenic|GO:0046685|17400898|IEP  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: response to arsenic; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT3G03980.1); Has 81708 Blast hits to 81560 proteins in 2189 species: Archae - 473; Bacteria - 45253; Metazoa - 5067; Fungi - 4039; Plants - 1546; Viruses - 2; Other Eukaryotes - 25328 (source: NCBI BLink).  protein_id AT4G13180.1p  transcript_id AT4G13180.1  protein_id AT4G13180.1p  transcript_id AT4G13180.1  
At4g13190	chr4:007661013	0.0	C/7661013-7661106,7660749-7660939,7660473-7660662,7659903-7660294,7659435-7659737	AT4G13190.1  CDS  gene_syn F17N18.80, F17N18_80  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note ATP binding / kinase/ protein kinase/ protein serine/threonine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT3G24790.1); Has 83194 Blast hits to 82271 proteins in 2900 species: Archae - 54; Bacteria - 7641; Metazoa - 36345; Fungi - 6316; Plants - 18584; Viruses - 356; Other Eukaryotes - 13898 (source: NCBI BLink).  protein_id AT4G13190.1p  transcript_id AT4G13190.1  protein_id AT4G13190.1p  transcript_id AT4G13190.1  
At4g13195	chr4:007662664	0.0	C/7662664-7663002	AT4G13195.1  CDS  gene_syn CLAVATA3/ESR-RELATED 44, CLE44  gene CLE44  function Belongs to a large gene family, called CLE for CLAVATA3/ESR-related, encoding small peptides with conserved carboxyl termini. The C-terminal 12 amino acid sequence of CLE44 is identical to that of a dodeca peptide (TDIF, tracheary element differentiation inhibitory factor) isolated from Arabidopsis and functions as a suppressor of plant stem cell differentiation. TDIF sequence is also identical to the C-terminal 12 amino acids of CLE41 (At3g24770).  go_process phloem or xylem histogenesis|GO:0010087|16902140|IDA  go_function molecular_function|GO:0003674||ND  product CLE44 (CLAVATA3/ESR-RELATED 44)  note CLAVATA3/ESR-RELATED 44 (CLE44); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: phloem or xylem histogenesis; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: CLE41 (CLAVATA3/ESR-RELATED 41); protein binding / receptor binding (TAIR:AT3G24770.1); Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G13195.1p  transcript_id AT4G13195.1  protein_id AT4G13195.1p  transcript_id AT4G13195.1  
At4g13200	chr4:007668974	0.0	C/7668974-7669166,7668728-7668882,7668292-7668501	AT4G13200.1  CDS  gene_syn F17N18.90, F17N18_90  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_component plastoglobule|GO:0010287|16461379|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 68 Blast hits to 68 proteins in 35 species: Archae - 0; Bacteria - 48; Metazoa - 2; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G13200.1p  transcript_id AT4G13200.1  protein_id AT4G13200.1p  transcript_id AT4G13200.1  
At4g13210	chr4:007670228	0.0	W/7670228-7670253,7670365-7670433,7671330-7671975,7672432-7672535,7672646-7672784,7672914-7673135	AT4G13210.1  CDS  gene_syn F17N18.100, F17N18_100  go_process biological_process|GO:0008150||ND  go_function lyase activity|GO:0016829||ISS  go_function pectate lyase activity|GO:0030570||ISS  product lyase/ pectate lyase  note lyase/ pectate lyase; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectate lyase family protein (TAIR:AT3G24670.1); Has 923 Blast hits to 918 proteins in 161 species: Archae - 0; Bacteria - 392; Metazoa - 0; Fungi - 125; Plants - 398; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT4G13210.1p  transcript_id AT4G13210.1  protein_id AT4G13210.1p  transcript_id AT4G13210.1  
At4g13215	chr4:007673224	0.0	C/7673224-7673760	AT4G13215.1  pseudogenic_transcript  pseudo  note pseudogene, leucine-rich repeat transmembrane protein kinase -related, similar to leucine-rich repeat transmembrane protein kinase, putative; blastp match of 44% identity and 2.7e-12 P-value to GP|28071311|dbj|BAC56000.1||AP004623 putative leucine-rich repeat transmembrane protein kinase {Oryza sativa (japonica cultivar-group)}  
At4g13220	chr4:007675059	0.0	C/7675059-7675275,7674867-7674928,7674664-7674768,7674431-7674577	AT4G13220.1  CDS  gene_syn F17N18.110, F17N18_110  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 17 Blast hits to 17 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G13220.1p  transcript_id AT4G13220.1  protein_id AT4G13220.1p  transcript_id AT4G13220.1  
At4g13230	chr4:007676549	0.0	C/7676549-7676629,7676391-7676450,7675841-7676062	AT4G13230.1  CDS  gene_syn F17N18.16  go_process embryonic development ending in seed dormancy|GO:0009793||ISS  go_function molecular_function|GO:0003674||ND  product late embryogenesis abundant domain-containing protein / LEA domain-containing protein  note late embryogenesis abundant domain-containing protein / LEA domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: lyase (TAIR:AT3G24640.1); Has 336 Blast hits to 190 proteins in 64 species: Archae - 0; Bacteria - 47; Metazoa - 52; Fungi - 24; Plants - 187; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT4G13230.1p  transcript_id AT4G13230.1  protein_id AT4G13230.1p  transcript_id AT4G13230.1  
At4g13235	chr4:007678190	0.0	C/7678190-7678247,7677866-7678062	AT4G13235.1  CDS  gene_syn EDA21, embryo sac development arrest 21  gene EDA21  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  go_process embryo sac development|GO:0009553|15634699|IMP  go_function molecular_function|GO:0003674||ND  product EDA21 (embryo sac development arrest 21)  note embryo sac development arrest 21 (EDA21); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo sac development; LOCATED IN: endomembrane system; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G13235.1p  transcript_id AT4G13235.1  protein_id AT4G13235.1p  transcript_id AT4G13235.1  
At4g13240	chr4:007680153	0.0	W/7680153-7680372,7680475-7680591,7680689-7680843,7680927-7681001,7681078-7681350,7681479-7681799,7682022-7682414	AT4G13240.1  CDS  gene_syn ATROPGEF9, F17N18.130, F17N18_130, KINASE PARTNER PROTEIN-LIKE, KPP-LIKE, ROPGEF9  gene ROPGEF9  function Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function Rho guanyl-nucleotide exchange factor activity|GO:0005089|15980860|ISS  product ROPGEF9; Rho guanyl-nucleotide exchange factor  note ROPGEF9; FUNCTIONS IN: Rho guanyl-nucleotide exchange factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: ROPGEF8; Rho guanyl-nucleotide exchange factor (TAIR:AT3G24620.1); Has 173 Blast hits to 172 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G13240.1p  transcript_id AT4G13240.1  protein_id AT4G13240.1p  transcript_id AT4G13240.1  
At4g13245	chr4:007684061	0.0	W/7684061-7684142	AT4G13245.1  snoRNA  gene_syn 67114.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT4G13245.1  
At4g13250	chr4:007686401	0.0	C/7686401-7686691,7686230-7686308,7686008-7686143,7685841-7685915,7685550-7685745,7685391-7685459,7685165-7685304,7684969-7685091,7684700-7684892,7684417-7684605	AT4G13250.1  CDS  gene_syn F17N18.140, F17N18_140  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT5G04900.1); Has 51597 Blast hits to 51519 proteins in 2076 species: Archae - 367; Bacteria - 30349; Metazoa - 4261; Fungi - 2633; Plants - 1242; Viruses - 3; Other Eukaryotes - 12742 (source: NCBI BLink).  protein_id AT4G13250.1p  transcript_id AT4G13250.1  protein_id AT4G13250.1p  transcript_id AT4G13250.1  
At4g13251	chr4:007688597	0.0	C/7688597-7689534	AT4G13251.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 6.5e-48 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At4g13252	chr4:007690833	0.0	C/7690833-7691492	AT4G13252.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 1.1e-22 P-value blast match to Q9S9L1 /206-367 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g13253	chr4:007691868	0.0	C/7691868-7692839	AT4G13253.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 1.5e-42 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At4g13254	chr4:007694251	0.0	C/7694251-7694756	AT4G13254.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 2.5e-28 P-value blast match to Q9S9L1 /206-367 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g13255	chr4:007695119	0.0	C/7695119-7696090	AT4G13255.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 1.3e-41 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At4g13256	chr4:007697502	0.0	C/7697502-7698007	AT4G13256.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 1.4e-29 P-value blast match to Q9S9L1 /206-367 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g13257	chr4:007698370	0.0	C/7698370-7699341	AT4G13257.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 6.6e-40 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays)  
At4g13258	chr4:007700753	0.0	C/7700753-7701280	AT4G13258.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 2.9e-24 P-value blast match to Q9S9L1 /206-367 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g13259	chr4:007701636	0.0	C/7701636-7702607	AT4G13259.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 7.2e-42 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays)  
At4g13264	chr4:007703904	0.0	C/7703904-7704812	AT4G13264.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 4.3e-23 P-value blast match to Q9S9L1 /206-367 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g13266	chr4:007706431	0.0	C/7706431-7706810,7706009-7706294	AT4G13266.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13950.1); Has 106 Blast hits to 99 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 106; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G13266.1p  transcript_id AT4G13266.1  protein_id AT4G13266.1p  transcript_id AT4G13266.1  
At4g13261	chr4:007708598	0.0	W/7708598-7709047	AT4G13261.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13263.1); Has 40 Blast hits to 40 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G13261.1p  transcript_id AT4G13261.1  protein_id AT4G13261.1p  transcript_id AT4G13261.1  
At4g13262	chr4:007709660	0.0	C/7709660-7710727	AT4G13262.1  pseudogenic_transcript  pseudo  note pseudogene, Phosphoribosylanthranilate transferase, similar to Phosphoribosylanthranilate transferase; blastp match of 28% identity and 1.1e-27 P-value to GP|1396054|dbj|BAA13032.1||D86180 phosphoribosylanthranilate transferase {Pisum sativum}  
At4g13263	chr4:007711064	0.0	W/7711064-7711513	AT4G13263.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13261.1); Has 40 Blast hits to 40 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G13263.1p  transcript_id AT4G13263.1  protein_id AT4G13263.1p  transcript_id AT4G13263.1  
At4g13260	chr4:007722939	0.0	C/7722939-7723616,7722393-7722641,7722168-7722290,7721840-7722037	AT4G13260.1  CDS  gene_syn YUC2, YUCCA2  gene YUC2  go_function flavin-containing monooxygenase activity|GO:0004499||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_process auxin biosynthetic process|GO:0009851|11209081|IMP  go_process auxin biosynthetic process|GO:0009851|16818609|IMP  product YUC2 (YUCCA2); FAD binding / NADP or NADPH binding / flavin-containing monooxygenase/ oxidoreductase  note YUCCA2 (YUC2); FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: auxin biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960), Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027); BEST Arabidopsis thaliana protein match is: YUC6 (YUCCA6); FAD binding / NADP or NADPH binding / flavin-containing monooxygenase/ monooxygenase/ oxidoreductase (TAIR:AT5G25620.1); Has 5984 Blast hits to 5969 proteins in 689 species: Archae - 9; Bacteria - 2553; Metazoa - 616; Fungi - 906; Plants - 353; Viruses - 0; Other Eukaryotes - 1547 (source: NCBI BLink).  protein_id AT4G13260.1p  transcript_id AT4G13260.1  protein_id AT4G13260.1p  transcript_id AT4G13260.1  
At4g13265	chr4:007730961	0.0	W/7730961-7731041	AT4G13265.1  tRNA  gene_syn 67115.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: AAG)  transcript_id AT4G13265.1  
At4g13270	chr4:007731280	0.0	W/7731280-7731852,7732423-7732494,7732900-7732902	AT4G13270.1  CDS  gene_syn T9E8.10, T9E8_10  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52330.1); Has 109 Blast hits to 109 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G13270.1p  transcript_id AT4G13270.1  protein_id AT4G13270.1p  transcript_id AT4G13270.1  
At4g13280	chr4:007736644	0.0	C/7736644-7736745,7736192-7736468,7734595-7734973,7734267-7734488,7733942-7734080,7733730-7733786,7733538-7733639,7733161-7733457	AT4G13280.1  CDS  gene_syn ATTPS12, T9E8.20, T9E8_20, TERPENOID SYNTHASE 12, TPS12  gene TPS12  function Catalyzes the conversion of farnesyl diphosphate to (Z)-gamma-bisabolene and the additional minor products E-nerolidol and alpha-bisabolol. Expressed in cortex and sub-epidermal layers of roots, leaf hydathodes and flower stigmata. Induced by wounding.  go_component peroxisome|GO:0005777|12154131|IDA  go_process response to wounding|GO:0009611|16297850|IEP  go_process sesquiterpenoid biosynthetic process|GO:0016106|16297850|IDA  go_process farnesyl diphosphate metabolic process|GO:0045338|16297850|IDA  go_function cyclase activity|GO:0009975|16297850|IDA  product TPS12 (TERPENOID SYNTHASE 12); cyclase  note TERPENOID SYNTHASE 12 (TPS12); FUNCTIONS IN: cyclase activity; INVOLVED IN: sesquiterpenoid biosynthetic process, response to wounding, farnesyl diphosphate metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: hydathode, stigma, root cortex; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: TPS13 (TERPENOID SYNTHASE 13); cyclase (TAIR:AT4G13300.1); Has 1054 Blast hits to 1045 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1051; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G13280.1p  transcript_id AT4G13280.1  protein_id AT4G13280.1p  transcript_id AT4G13280.1  
At4g13285	chr4:007738680	0.0	W/7738680-7738867	AT4G13285.1  pseudogenic_transcript  pseudo  function Pseudogene of ATCG00420  
At4g13290	chr4:007740681	0.0	W/7740681-7741067,7741304-7741780,7741864-7742145,7742344-7742670	AT4G13290.1  CDS  gene_syn CYP71A19, CYTOCHROME P450, FAMILY 71, SUBFAMILY A, POLYPEPTIDE 19, T9E8.30, T9E8_30  gene CYP71A19  function putative cytochrome P450  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71A19; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71A19; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP71A20; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G13310.1); Has 23164 Blast hits to 23039 proteins in 1231 species: Archae - 21; Bacteria - 2025; Metazoa - 10202; Fungi - 4328; Plants - 5742; Viruses - 3; Other Eukaryotes - 843 (source: NCBI BLink).  protein_id AT4G13290.1p  transcript_id AT4G13290.1  protein_id AT4G13290.1p  transcript_id AT4G13290.1  
At4g13300	chr4:007746262	0.0	C/7746262-7746363,7745819-7746095,7744998-7745376,7744669-7744890,7743608-7743746,7743239-7743487,7742871-7743167	AT4G13300.1  CDS  gene_syn ATTPS13, T9E8.40, T9E8_40, TERPENOID SYNTHASE 13, TPS13  gene TPS13  function Catalyzes the conversion of farnesyl diphosphate to (Z)-gamma-bisabolene and the additional minor products E-nerolidol and alpha-bisabolol. Expressed in cortex and sub-epidermal layers of roots, leaf hydathodes and flower stigmata. Induced by wounding.  go_process response to wounding|GO:0009611|16297850|IEP  go_process sesquiterpenoid biosynthetic process|GO:0016106|16297850|IDA  go_process farnesyl diphosphate metabolic process|GO:0045338|16297850|IDA  go_function cyclase activity|GO:0009975|16297850|IDA  product TPS13 (TERPENOID SYNTHASE 13); cyclase  note TERPENOID SYNTHASE 13 (TPS13); FUNCTIONS IN: cyclase activity; INVOLVED IN: sesquiterpenoid biosynthetic process, response to wounding, farnesyl diphosphate metabolic process; EXPRESSED IN: hydathode, stigma, root cortex; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: TPS12 (TERPENOID SYNTHASE 12); cyclase (TAIR:AT4G13280.1); Has 1041 Blast hits to 1037 proteins in 139 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1036; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G13300.1p  transcript_id AT4G13300.1  protein_id AT4G13300.1p  transcript_id AT4G13300.1  
At4g13310	chr4:007750453	0.0	W/7750453-7750836,7750991-7751491,7751569-7751850,7752723-7753049	AT4G13310.1  CDS  gene_syn CYP71A20, CYTOCHROME P450, FAMILY 71, SUBFAMILY A, POLYPEPTIDE 20, T9E8.50, T9E8_50  gene CYP71A20  function putative cytochrome P450  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71A20; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71A20; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP71A19; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G13290.1); Has 23733 Blast hits to 23608 proteins in 1253 species: Archae - 40; Bacteria - 2232; Metazoa - 10277; Fungi - 4456; Plants - 5792; Viruses - 3; Other Eukaryotes - 933 (source: NCBI BLink).  protein_id AT4G13310.1p  transcript_id AT4G13310.1  protein_id AT4G13310.1p  transcript_id AT4G13310.1  
At4g13310	chr4:007750453	0.0	W/7750453-7750836,7750991-7751491,7751569-7751856	AT4G13310.2  CDS  gene_syn CYP71A20, CYTOCHROME P450, FAMILY 71, SUBFAMILY A, POLYPEPTIDE 20, T9E8.50, T9E8_50  gene CYP71A20  function putative cytochrome P450  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71A20; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71A20; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP71A19; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G13290.1); Has 18891 Blast hits to 18811 proteins in 1065 species: Archae - 20; Bacteria - 1249; Metazoa - 8975; Fungi - 2914; Plants - 5182; Viruses - 0; Other Eukaryotes - 551 (source: NCBI BLink).  protein_id AT4G13310.2p  transcript_id AT4G13310.2  protein_id AT4G13310.2p  transcript_id AT4G13310.2  
At4g13320	chr4:007753436	0.0	W/7753436-7754086	AT4G13320.1  CDS  gene_syn T9E8.60, T9E8_60  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 66 Blast hits to 65 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G13320.1p  transcript_id AT4G13320.1  protein_id AT4G13320.1p  transcript_id AT4G13320.1  
At4g13330	chr4:007755604	0.0	C/7755604-7755837,7755295-7755529,7754993-7755145,7754248-7754912	AT4G13330.1  CDS  gene_syn T9E8.70, T9E8_70  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 49 Blast hits to 49 proteins in 19 species: Archae - 0; Bacteria - 9; Metazoa - 14; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT4G13330.1p  transcript_id AT4G13330.1  protein_id AT4G13330.1p  transcript_id AT4G13330.1  
At4g13340	chr4:007758610	0.0	W/7758610-7760892	AT4G13340.1  CDS  gene_syn T9E8.80, T9E8_80  go_component cell wall|GO:0005618|16287169|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_function structural constituent of cell wall|GO:0005199|12644681|ISS  go_function protein binding|GO:0005515|12644681|ISS  product leucine-rich repeat family protein / extensin family protein  note leucine-rich repeat family protein / extensin family protein; FUNCTIONS IN: structural constituent of cell wall, protein binding; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / extensin family protein (TAIR:AT3G24480.1); Has 527469 Blast hits to 98695 proteins in 2588 species: Archae - 1432; Bacteria - 100230; Metazoa - 200562; Fungi - 58262; Plants - 84057; Viruses - 13216; Other Eukaryotes - 69710 (source: NCBI BLink).  protein_id AT4G13340.1p  transcript_id AT4G13340.1  protein_id AT4G13340.1p  transcript_id AT4G13340.1  
At4g13345	chr4:007767292	0.0	W/7767292-7767481,7767564-7767637,7767723-7767882,7767980-7768004,7768084-7768173,7768264-7768435,7768533-7768606,7768706-7768775,7768866-7768937,7769023-7769156,7769229-7769302,7769377-7769426	AT4G13345.1  CDS  gene_syn MEE55, maternal effect embryo arrest 55  gene MEE55  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  product MEE55 (maternal effect embryo arrest 55)  note maternal effect embryo arrest 55 (MEE55); INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: TMS membrane protein/tumour differentially expressed protein (InterPro:IPR005016); BEST Arabidopsis thaliana protein match is: TMS membrane family protein / tumour differentially expressed (TDE) family protein (TAIR:AT3G24460.1); Has 643 Blast hits to 596 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 392; Fungi - 121; Plants - 78; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT4G13345.1p  transcript_id AT4G13345.1  protein_id AT4G13345.1p  transcript_id AT4G13345.1  
At4g13345	chr4:007767292	0.0	W/7767292-7767481,7767564-7767637,7767723-7767882,7767980-7768004,7768084-7768173,7768264-7768435,7768533-7768610,7768710-7768775,7768866-7768937,7769023-7769156,7769229-7769302,7769377-7769426	AT4G13345.2  CDS  gene_syn MEE55, maternal effect embryo arrest 55  gene MEE55  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  product MEE55 (maternal effect embryo arrest 55)  note maternal effect embryo arrest 55 (MEE55); INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: TMS membrane protein/tumour differentially expressed protein (InterPro:IPR005016); BEST Arabidopsis thaliana protein match is: TMS membrane family protein / tumour differentially expressed (TDE) family protein (TAIR:AT3G24460.1); Has 640 Blast hits to 595 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 392; Fungi - 119; Plants - 78; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT4G13345.2p  transcript_id AT4G13345.2  protein_id AT4G13345.2p  transcript_id AT4G13345.2  
At4g13350	chr4:007773223	0.0	C/7773223-7773321,7773068-7773129,7772893-7772980,7772750-7772811,7772207-7772669,7771638-7772039,7771410-7771544,7771214-7771321,7771030-7771110,7770616-7770748,7770472-7770511,7770170-7770305	AT4G13350.1  CDS  gene_syn NIG, NSP (NUCLEAR SHUTTLE PROTEIN)-INTERACTING GTPASE, T9E8.90, T9E8_90  gene NIG  function Encodes a GTPase that interacts with nuclear shuttle proteins (NSPs) from a number of different plant viruses. The gene is widely expressed and NIG transcript levels do not rise in response to viral infection. This cytoplasmic protein does not directly interact with a viral movement protein (MP), but, it does promote the movement of NSP from the nucleus to the cytoplasm. Overexpression of NIG in Arabidopsis plants renders them more sensitive to geminivirus infection.  go_component cytoplasm|GO:0005737|18489709|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process nucleocytoplasmic transport|GO:0006913|18489709|IDA  go_process response to virus|GO:0009615|18489709|IMP  go_function GTPase activity|GO:0003924|18489709|IDA  go_function GTP binding|GO:0005525|18489709|IDA  product NIG (NSP (NUCLEAR SHUTTLE PROTEIN)-INTERACTING GTPASE); GTP binding / GTPase  note NSP (NUCLEAR SHUTTLE PROTEIN)-INTERACTING GTPASE (NIG); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: response to virus, nucleocytoplasmic transport; LOCATED IN: cytosol, cytoplasm; EXPRESSED IN: root, flower, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: ARF GTPase activator/ zinc ion binding (TAIR:AT4G32630.1); Has 6217 Blast hits to 5304 proteins in 299 species: Archae - 2; Bacteria - 226; Metazoa - 2994; Fungi - 1205; Plants - 561; Viruses - 55; Other Eukaryotes - 1174 (source: NCBI BLink).  protein_id AT4G13350.1p  transcript_id AT4G13350.1  protein_id AT4G13350.1p  transcript_id AT4G13350.1  
At4g13350	chr4:007773223	0.0	C/7773223-7773321,7773068-7773129,7772893-7772980,7772750-7772811,7772207-7772669,7771638-7772039,7771410-7771544,7771214-7771321,7771030-7771110,7770616-7770748,7770472-7770511,7770170-7770305	AT4G13350.2  CDS  gene_syn NIG, NSP (NUCLEAR SHUTTLE PROTEIN)-INTERACTING GTPASE, T9E8.90, T9E8_90  gene NIG  function Encodes a GTPase that interacts with nuclear shuttle proteins (NSPs) from a number of different plant viruses. The gene is widely expressed and NIG transcript levels do not rise in response to viral infection. This cytoplasmic protein does not directly interact with a viral movement protein (MP), but, it does promote the movement of NSP from the nucleus to the cytoplasm. Overexpression of NIG in Arabidopsis plants renders them more sensitive to geminivirus infection.  go_component cytoplasm|GO:0005737|18489709|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process nucleocytoplasmic transport|GO:0006913|18489709|IDA  go_process response to virus|GO:0009615|18489709|IMP  go_function GTPase activity|GO:0003924|18489709|IDA  go_function GTP binding|GO:0005525|18489709|IDA  product NIG (NSP (NUCLEAR SHUTTLE PROTEIN)-INTERACTING GTPASE); GTP binding / GTPase  note NSP (NUCLEAR SHUTTLE PROTEIN)-INTERACTING GTPASE (NIG); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: response to virus, nucleocytoplasmic transport; LOCATED IN: cytosol, cytoplasm; EXPRESSED IN: root, flower, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: ARF GTPase activator/ zinc ion binding (TAIR:AT4G32630.1); Has 6217 Blast hits to 5304 proteins in 299 species: Archae - 2; Bacteria - 226; Metazoa - 2994; Fungi - 1205; Plants - 561; Viruses - 55; Other Eukaryotes - 1174 (source: NCBI BLink).  protein_id AT4G13350.2p  transcript_id AT4G13350.2  protein_id AT4G13350.2p  transcript_id AT4G13350.2  
At4g13360	chr4:007775133	0.0	W/7775133-7775358,7775528-7775629,7775755-7775819,7776078-7776212,7776310-7776406,7776692-7776821,7776906-7777084,7777193-7777320,7777416-7777517,7777600-7777701	AT4G13360.1  CDS  gene_syn T9E8.100, T9E8_100  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_process metabolic process|GO:0008152||ISS  go_function catalytic activity|GO:0003824||ISS  product catalytic  note catalytic; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: enoyl-CoA hydratase/isomerase family protein (TAIR:AT3G24360.1); Has 13706 Blast hits to 13704 proteins in 1059 species: Archae - 151; Bacteria - 8301; Metazoa - 722; Fungi - 359; Plants - 270; Viruses - 0; Other Eukaryotes - 3903 (source: NCBI BLink).  protein_id AT4G13360.1p  transcript_id AT4G13360.1  protein_id AT4G13360.1p  transcript_id AT4G13360.1  
At4g13370	chr4:007779237	0.0	C/7779237-7780334,7778886-7779104,7778708-7778799,7778343-7778623,7777916-7778247	AT4G13370.1  CDS  gene_syn T9E8.110, T9E8_110  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF936, plant (InterPro:IPR010341); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14170.1); Has 363 Blast hits to 245 proteins in 71 species: Archae - 0; Bacteria - 28; Metazoa - 83; Fungi - 17; Plants - 136; Viruses - 6; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT4G13370.1p  transcript_id AT4G13370.1  protein_id AT4G13370.1p  transcript_id AT4G13370.1  
At4g13380	chr4:007781782	0.0	W/7781782-7782011,7782111-7782193,7782279-7782553	AT4G13380.1  CDS  gene_syn MEE56, T9E8.120, T9E8_120, maternal effect embryo arrest 56  gene MEE56  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function metal ion binding|GO:0046872||ISS  product MEE56 (maternal effect embryo arrest 56); metal ion binding  note maternal effect embryo arrest 56 (MEE56); FUNCTIONS IN: metal ion binding; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT1G57780.1); Has 1747 Blast hits to 1206 proteins in 158 species: Archae - 11; Bacteria - 127; Metazoa - 292; Fungi - 89; Plants - 169; Viruses - 6; Other Eukaryotes - 1053 (source: NCBI BLink).  protein_id AT4G13380.1p  transcript_id AT4G13380.1  protein_id AT4G13380.1p  transcript_id AT4G13380.1  
At4g13390	chr4:007783856	0.0	W/7783856-7785145	AT4G13390.1  CDS  gene_syn T9E8.130, T9E8_130  go_component endomembrane system|GO:0012505||IEA  go_process plant-type cell wall organization|GO:0009664||IEA  go_function structural constituent of cell wall|GO:0005199||IEA  product proline-rich extensin-like family protein  note proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Extensin-like region (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: proline-rich extensin-like family protein (TAIR:AT5G35190.1); Has 134166 Blast hits to 36502 proteins in 1316 species: Archae - 292; Bacteria - 16712; Metazoa - 55127; Fungi - 21151; Plants - 18838; Viruses - 3795; Other Eukaryotes - 18251 (source: NCBI BLink).  protein_id AT4G13390.1p  transcript_id AT4G13390.1  protein_id AT4G13390.1p  transcript_id AT4G13390.1  
At4g13395	chr4:007785883	0.0	C/7785883-7786050	AT4G13395.1  CDS  gene_syn DEVIL 10, DVL10, ROTUNDIFOLIA LIKE 12, RTFL12  gene RTFL12  go_component cellular_component|GO:0005575||ND  go_process shoot development|GO:0048367|14871303|ISS  go_function molecular_function|GO:0003674||ND  product RTFL12 (ROTUNDIFOLIA LIKE 12)  note ROTUNDIFOLIA LIKE 12 (RTFL12); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: shoot development; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); BEST Arabidopsis thaliana protein match is: ROT4 (ROTUNDIFOLIA4) (TAIR:AT2G36985.1); Has 77 Blast hits to 77 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G13395.1p  transcript_id AT4G13395.1  protein_id AT4G13395.1p  transcript_id AT4G13395.1  
At4g13400	chr4:007791081	0.0	C/7791081-7791149,7790925-7791002,7790694-7790743,7790546-7790599,7790412-7790464,7790089-7790161,7789786-7789847,7789474-7789542,7788977-7789082,7788745-7788812,7788500-7788600,7788241-7788336,7788074-7788141,7787907-7787919	AT4G13400.1  CDS  gene_syn T9E8.140, T9E8_140  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63290.1); Has 253 Blast hits to 253 proteins in 88 species: Archae - 0; Bacteria - 66; Metazoa - 16; Fungi - 72; Plants - 37; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT4G13400.1p  transcript_id AT4G13400.1  protein_id AT4G13400.1p  transcript_id AT4G13400.1  
At4g13410	chr4:007795759	0.0	C/7795759-7795824,7795322-7795627,7794915-7795013,7794521-7794773,7794109-7794219,7793901-7794037,7793568-7793681,7793029-7793228,7792769-7792948,7792219-7792366	AT4G13410.1  CDS  gene_syn ATCSLA15, CELLULOSE SYNTHASE LIKE A15, CSLA15, T9E8.150, T9E8_150  gene ATCSLA15  function encodes a gene similar to cellulose synthase  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  product ATCSLA15; cellulose synthase/ transferase, transferring glycosyl groups  note ATCSLA15; FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: ATCSLA10; cellulose synthase/ transferase, transferring glycosyl groups (TAIR:AT1G24070.1); Has 2881 Blast hits to 2879 proteins in 789 species: Archae - 103; Bacteria - 2136; Metazoa - 9; Fungi - 66; Plants - 294; Viruses - 11; Other Eukaryotes - 262 (source: NCBI BLink).  protein_id AT4G13410.1p  transcript_id AT4G13410.1  protein_id AT4G13410.1p  transcript_id AT4G13410.1  
At4g13420	chr4:007802103	0.0	C/7802103-7802174,7801524-7801607,7801216-7801438,7799482-7799730,7799106-7799144,7798754-7799014,7798607-7798659,7798390-7798504,7797038-7798299	AT4G13420.1  CDS  gene_syn ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, ATHAK5, HAK5, HIGH AFFINITY K+ TRANSPORTER 5, T9E8.160, T9E8_160  gene HAK5  function Encodes a protein of the KUP/HAK/KT potassium channel class that is upregulated in the roots by K levels.  go_component membrane|GO:0016020||IEA  go_process potassium ion transport|GO:0006813||IEA  go_process potassium ion transport|GO:0006813||ISS  go_function potassium:sodium symporter activity|GO:0009674|15347784|IMP  go_function potassium ion transmembrane transporter activity|GO:0015079||ISS  product HAK5 (HIGH AFFINITY K+ TRANSPORTER 5); potassium ion transmembrane transporter/ potassium:sodium symporter  note HIGH AFFINITY K+ TRANSPORTER 5 (HAK5); FUNCTIONS IN: potassium ion transmembrane transporter activity, potassium:sodium symporter activity; INVOLVED IN: potassium ion transport; LOCATED IN: membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: K+ potassium transporter (InterPro:IPR003855), Potassium uptake protein, kup (InterPro:IPR018519); BEST Arabidopsis thaliana protein match is: potassium transporter family protein (TAIR:AT1G60160.1); Has 1992 Blast hits to 1978 proteins in 580 species: Archae - 13; Bacteria - 1378; Metazoa - 0; Fungi - 55; Plants - 424; Viruses - 4; Other Eukaryotes - 118 (source: NCBI BLink).  protein_id AT4G13420.1p  transcript_id AT4G13420.1  protein_id AT4G13420.1p  transcript_id AT4G13420.1  
At4g13430	chr4:007807739	0.0	C/7807739-7807789,7807523-7807657,7807273-7807443,7806929-7807081,7806779-7806847,7806567-7806683,7806327-7806401,7806006-7806083,7805786-7805881,7805641-7805690,7805305-7805359,7805091-7805222,7804688-7804735,7804434-7804592,7804194-7804334	AT4G13430.1  CDS  gene_syn IIL1, ISOPROPYL MALATE ISOMERASE LARGE SUBUNIT 1, T9E8.170, T9E8_170  gene IIL1  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function hydro-lyase activity|GO:0016836||IEA  go_function 4 iron, 4 sulfur cluster binding|GO:0051539||IEA  go_process metabolic process|GO:0008152||ISS  go_function lyase activity|GO:0016829||ISS  product IIL1 (ISOPROPYL MALATE ISOMERASE LARGE SUBUNIT 1); 4 iron, 4 sulfur cluster binding / hydro-lyase/ lyase  note ISOPROPYL MALATE ISOMERASE LARGE SUBUNIT 1 (IIL1); FUNCTIONS IN: 4 iron, 4 sulfur cluster binding, lyase activity, hydro-lyase activity; INVOLVED IN: response to cadmium ion, metabolic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha (InterPro:IPR001030), Homoaconitase/3-isopropylmalate dehydratase, small/large subunit (InterPro:IPR015936), Homoaconitase/3-isopropylmalate dehydratase, large subunit, subgroup (InterPro:IPR006251), Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 (InterPro:IPR015932), Aconitase-like core (InterPro:IPR015937), Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomains 1 and 3 (InterPro:IPR015931); BEST Arabidopsis thaliana protein match is: aconitate hydratase/ copper ion binding (TAIR:AT4G26970.1); Has 13008 Blast hits to 13008 proteins in 1502 species: Archae - 267; Bacteria - 5728; Metazoa - 399; Fungi - 429; Plants - 84; Viruses - 0; Other Eukaryotes - 6101 (source: NCBI BLink).  protein_id AT4G13430.1p  transcript_id AT4G13430.1  protein_id AT4G13430.1p  transcript_id AT4G13430.1  
At4g13440	chr4:007810215	0.0	W/7810215-7810679	AT4G13440.1  CDS  gene_syn T9E8.180, T9E8_180  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); Has 79 Blast hits to 78 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 45; Fungi - 6; Plants - 24; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G13440.1p  transcript_id AT4G13440.1  protein_id AT4G13440.1p  transcript_id AT4G13440.1  
At4g13442	chr4:007812745	0.0	W/7812745-7813967	AT4G13442.1  pseudogenic_transcript  pseudo  note pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 37% identity and 9.1e-67 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}  
At4g13445	chr4:007814202	0.0	W/7814202-7814274	AT4G13445.1  tRNA  gene_syn 67115.TRNA-GLU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Glu (anticodon: CTC)  transcript_id AT4G13445.1  
At4g13450	chr4:007815395	0.0	C/7815395-7815904	AT4G13450.2  CDS  gene_syn T9E8.190, T9E8_190  go_process response to stress|GO:0006950||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product universal stress protein (USP) family protein  note universal stress protein (USP) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016); Has 38 Blast hits to 38 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G13450.2p  transcript_id AT4G13450.2  protein_id AT4G13450.2p  transcript_id AT4G13450.2  
At4g13450	chr4:007815411	0.0	C/7815411-7815904,7815146-7815311	AT4G13450.1  CDS  gene_syn T9E8.190, T9E8_190  go_process response to stress|GO:0006950||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product universal stress protein (USP) family protein  note universal stress protein (USP) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016); BEST Arabidopsis thaliana protein match is: MRH6 (morphogenesis of root hair 6) (TAIR:AT2G03720.1); Has 68 Blast hits to 68 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G13450.1p  transcript_id AT4G13450.1  protein_id AT4G13450.1p  transcript_id AT4G13450.1  
At4g13455	chr4:007821030	0.0	W/7821030-7821656	AT4G13455.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.0e-12 P-value blast match to GB:AAC24836 pol polyprotein (Ty1_Copia-element) (Candida albicans)  
At4g13460	chr4:007824653	0.0	C/7824653-7826605	AT4G13460.1  CDS  gene_syn SDG22, SET22, SETDOMAIN GROUP 22, SU(VAR)3-9 HOMOLOG 9, SUVH9, T6G15.10, T6G15_10  gene SUVH9  function Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. A plant line expressing an RNAi construct directed against this gene has reduced agrobacterium-mediated tumor formation.  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function histone-lysine N-methyltransferase activity|GO:0018024||IEA  go_process DNA mediated transformation|GO:0009294|17827277|IMP  product SUVH9; histone-lysine N-methyltransferase/ zinc ion binding  note SUVH9; FUNCTIONS IN: zinc ion binding, histone-lysine N-methyltransferase activity; INVOLVED IN: DNA mediated transformation; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), SRA-YDG (InterPro:IPR003105), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Pre-SET zinc-binding region (InterPro:IPR007728); BEST Arabidopsis thaliana protein match is: SUVH2 (SU(VAR)3-9 HOMOLOG 2); histone methyltransferase (TAIR:AT2G33290.1); Has 1796 Blast hits to 1667 proteins in 134 species: Archae - 0; Bacteria - 8; Metazoa - 1271; Fungi - 88; Plants - 352; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT4G13460.1p  transcript_id AT4G13460.1  protein_id AT4G13460.1p  transcript_id AT4G13460.1  
At4g13460	chr4:007824653	0.0	C/7824653-7826605	AT4G13460.2  CDS  gene_syn SDG22, SET22, SETDOMAIN GROUP 22, SU(VAR)3-9 HOMOLOG 9, SUVH9, T6G15.10, T6G15_10  gene SUVH9  function Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. A plant line expressing an RNAi construct directed against this gene has reduced agrobacterium-mediated tumor formation.  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function histone-lysine N-methyltransferase activity|GO:0018024||IEA  go_process DNA mediated transformation|GO:0009294|17827277|IMP  product SUVH9; histone-lysine N-methyltransferase/ zinc ion binding  note SU(VAR)3-9 HOMOLOG 9 (SUVH9); FUNCTIONS IN: zinc ion binding, histone-lysine N-methyltransferase activity; INVOLVED IN: DNA mediated transformation; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), SRA-YDG (InterPro:IPR003105), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Pre-SET zinc-binding region (InterPro:IPR007728); BEST Arabidopsis thaliana protein match is: SUVH2 (SU(VAR)3-9 HOMOLOG 2); histone methyltransferase (TAIR:AT2G33290.1); Has 1796 Blast hits to 1667 proteins in 134 species: Archae - 0; Bacteria - 8; Metazoa - 1271; Fungi - 88; Plants - 352; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT4G13460.2p  transcript_id AT4G13460.2  protein_id AT4G13460.2p  transcript_id AT4G13460.2  
At4g13470	chr4:007827973	0.0	C/7827973-7829482	AT4G13470.1  mRNA_TE_gene  pseudo  gene_syn T6G15.20, T6G15_20  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G24255.1); similar to hypothetical protein 23.t00046 [Brassica oleracea] (GB:ABD65629.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446)  
At4g13480	chr4:007836675	0.0	W/7836675-7836789,7836883-7837012,7837113-7837653	AT4G13480.1  CDS  gene_syn AtMYB79, T6G15.30, T6G15_30, myb domain protein 79  gene AtMYB79  function Member of the R2R3 factor gene family.  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product AtMYB79 (myb domain protein 79); DNA binding / transcription factor  note myb domain protein 79 (AtMYB79); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB305 (myb domain protein 305); DNA binding / transcription factor (TAIR:AT3G24310.1); Has 6367 Blast hits to 5805 proteins in 352 species: Archae - 0; Bacteria - 0; Metazoa - 706; Fungi - 299; Plants - 3746; Viruses - 6; Other Eukaryotes - 1610 (source: NCBI BLink).  protein_id AT4G13480.1p  transcript_id AT4G13480.1  protein_id AT4G13480.1p  transcript_id AT4G13480.1  
At4g13490	chr4:007840137	0.0	C/7840137-7840284,7839645-7839778,7839137-7839535	AT4G13490.1  CDS  gene_syn T6G15.40, T6G15_40  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G47700.1); Has 285 Blast hits to 285 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 39; Fungi - 21; Plants - 121; Viruses - 2; Other Eukaryotes - 102 (source: NCBI BLink).  protein_id AT4G13490.1p  transcript_id AT4G13490.1  protein_id AT4G13490.1p  transcript_id AT4G13490.1  
At4g13495	chr4:007842967	0.0	W/7842967-7846774	AT4G13495.2  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G13495.2  
At4g13495	chr4:007843217	0.0	W/7843217-7846774	AT4G13495.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G13495.1  
At4g13493	chr4:007845707	0.0	W/7845707-7845927	AT4G13493.1  miRNA  gene_syn MICRORNA850A, MIR850A  gene MIR850A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UAAGAUCCGGACUACAACAAAG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR850A (MICRORNA850A); miRNA  transcript_id AT4G13493.1  
At4g13494	chr4:007846597	0.0	W/7846597-7846899	AT4G13494.1  miRNA  gene_syn MICRORNA863A, MIR863A  gene MIR863A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUGAGAGCAACAAGACAUAAU  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR863A (MICRORNA863A); miRNA  transcript_id AT4G13494.1  
At4g13500	chr4:007857712	0.0	C/7857712-7857874,7857578-7857647,7856987-7857131	AT4G13500.1  CDS  gene_syn T6G15.50, T6G15_50  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G05310.1); Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G13500.1p  transcript_id AT4G13500.1  protein_id AT4G13500.1p  transcript_id AT4G13500.1  
At4g13505	chr4:007858000	0.0	C/7858000-7859691	AT4G13505.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT4G13510  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G13505.1  
At4g13510	chr4:007858220	0.0	W/7858220-7859725	AT4G13510.1  CDS  gene_syn AMMONIUM TRANSPORTER 1;1, AMT1;1, ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ATAMT1, ATAMT1;1, T6G15.60, T6G15_60  gene AMT1;1  function Encodes a plasma membrane localized ammonium transporter. Contains a cytosolic trans-activation domain essential for ammonium uptake.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_component plasma membrane|GO:0005886|16586298|IDA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_process ammonium transport|GO:0015696|16586298|IDA  go_process protein polymerization|GO:0051258|17293878|IDA  go_function ammonium transmembrane transporter activity|GO:0008519|16586298|IDA  go_function ammonium transmembrane transporter activity|GO:0008519|17026539|IMP  go_function ammonium transmembrane transporter activity|GO:0008519||ISS  product AMT1;1 (AMMONIUM TRANSPORTER 1;1); ammonium transmembrane transporter  note AMMONIUM TRANSPORTER 1;1 (AMT1;1); FUNCTIONS IN: ammonium transmembrane transporter activity; INVOLVED IN: ammonium transport, protein polymerization, transport; LOCATED IN: nucleus, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ammonium transporter (InterPro:IPR001905), Ammonium transporter, conserved site (InterPro:IPR018047), Rh-like protein/ammonium transporter (InterPro:IPR010256); BEST Arabidopsis thaliana protein match is: AMT1;3 (AMMONIUM TRANSPORTER 1;3); ammonium transmembrane transporter (TAIR:AT3G24300.1); Has 8987 Blast hits to 8979 proteins in 1166 species: Archae - 146; Bacteria - 2590; Metazoa - 425; Fungi - 299; Plants - 290; Viruses - 0; Other Eukaryotes - 5237 (source: NCBI BLink).  protein_id AT4G13510.1p  transcript_id AT4G13510.1  protein_id AT4G13510.1p  transcript_id AT4G13510.1  
At4g13520	chr4:007864462	0.0	W/7864462-7864650	AT4G13520.1  CDS  gene_syn SMALL ACIDIC PROTEIN 1, SMAP1, T6G15.70, T6G15_70  gene SMAP1  function Encodes a small acid protein (SMAP1) that mediates responses Arabidopsis root to the synthetic auxin 2,4-Dichlorophenoxyacetic acid.  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733|16923017|IMP  go_process regulation of gene expression, epigenetic|GO:0040029|16923017|IEP  go_function molecular_function|GO:0003674||ND  product SMAP1 (SMALL ACIDIC PROTEIN 1)  note SMALL ACIDIC PROTEIN 1 (SMAP1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus, regulation of gene expression, epigenetic; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; Has 10 Blast hits to 10 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G13520.1p  transcript_id AT4G13520.1  protein_id AT4G13520.1p  transcript_id AT4G13520.1  
At4g13530	chr4:007866808	0.0	W/7866808-7867494,7868430-7868555	AT4G13530.1  CDS  gene_syn T6G15.80, T6G15_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10080.1); Has 38 Blast hits to 38 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G13530.1p  transcript_id AT4G13530.1  protein_id AT4G13530.1p  transcript_id AT4G13530.1  
At4g13530	chr4:007866808	0.0	W/7866808-7867494,7868433-7868555	AT4G13530.2  CDS  gene_syn T6G15.80, T6G15_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10080.1); Has 40 Blast hits to 40 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G13530.2p  transcript_id AT4G13530.2  protein_id AT4G13530.2p  transcript_id AT4G13530.2  
At4g13540	chr4:007869896	0.0	W/7869896-7870259,7870336-7870604	AT4G13540.1  CDS  gene_syn T6G15.90, T6G15_90  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  product unknown protein  note unknown protein; INVOLVED IN: N-terminal protein myristoylation; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23930.1); Has 4331 Blast hits to 3076 proteins in 297 species: Archae - 26; Bacteria - 235; Metazoa - 1804; Fungi - 392; Plants - 81; Viruses - 38; Other Eukaryotes - 1755 (source: NCBI BLink).  protein_id AT4G13540.1p  transcript_id AT4G13540.1  protein_id AT4G13540.1p  transcript_id AT4G13540.1  
At4g13550	chr4:007876127	0.0	C/7876127-7876160,7875832-7875926,7875661-7875742,7875211-7875275,7873956-7874993,7873813-7873875,7873683-7873729,7873516-7873561,7873360-7873439,7872967-7873080,7872796-7872877,7872580-7872693,7872171-7872251,7871589-7871714,7871251-7871331	AT4G13550.1  CDS  gene_syn T6G15.100, T6G15_100  go_component chloroplast|GO:0009507|18431481|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product triacylglycerol lipase  note triacylglycerol lipase; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: lipase class 3 family protein (TAIR:AT5G18640.1); Has 1771 Blast hits to 1759 proteins in 284 species: Archae - 0; Bacteria - 261; Metazoa - 277; Fungi - 343; Plants - 498; Viruses - 5; Other Eukaryotes - 387 (source: NCBI BLink).  protein_id AT4G13550.1p  transcript_id AT4G13550.1  protein_id AT4G13550.1p  transcript_id AT4G13550.1  
At4g13554	chr4:007878185	0.0	C/7878185-7878561	AT4G13554.1  miRNA  gene_syn MICRORNA857A, MIR857A  gene MIR857A  function Encodes a microRNA that targets a Laccase family member. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUUUGUAUGUUGAAGGUGUAU  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR857A (MICRORNA857A); miRNA  transcript_id AT4G13554.1  
At4g13555	chr4:007878652	0.0	C/7878652-7878760	AT4G13555.1  miRNA  gene_syn MICRORNA397B, MIR397B  gene MIR397B  function Encodes a microRNA that targets several Laccase family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCAUUGAGUGCAUCGUUGAUG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR397B (MICRORNA397B); miRNA  transcript_id AT4G13555.1  
At4g13560	chr4:007880264	0.0	C/7880264-7880311,7879938-7880138,7879764-7879844	AT4G13560.1  CDS  gene_syn T6G15.110, T6G15_110, UNE15, unfertilized embryo sac 15  gene UNE15  go_component cellular_component|GO:0005575||ND  go_process double fertilization forming a zygote and endosperm|GO:0009567|15634699|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||ISS  go_function molecular_function|GO:0003674||ND  product UNE15 (unfertilized embryo sac 15)  note unfertilized embryo sac 15 (UNE15); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy, double fertilization forming a zygote and endosperm; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: late embryogenesis abundant protein, putative / LEA protein, putative (TAIR:AT1G52690.2); Has 368 Blast hits to 230 proteins in 52 species: Archae - 0; Bacteria - 30; Metazoa - 41; Fungi - 4; Plants - 291; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G13560.1p  transcript_id AT4G13560.1  protein_id AT4G13560.1p  transcript_id AT4G13560.1  
At4g13570	chr4:007884516	0.0	W/7884516-7884605,7885398-7885664	AT4G13570.1  CDS  gene_syn HTA4, T6G15.120, T6G15_120  gene HTA4  function Encodes HTA4, a histone H2A protein.  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product HTA4; DNA binding  note HTA4; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: stem, embryo, sepal, seed; EXPRESSED DURING: 4 anthesis, F mature embryo stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: HTA11; DNA binding (TAIR:AT3G54560.1); Has 3083 Blast hits to 3083 proteins in 272 species: Archae - 0; Bacteria - 0; Metazoa - 2055; Fungi - 233; Plants - 431; Viruses - 0; Other Eukaryotes - 364 (source: NCBI BLink).  protein_id AT4G13570.1p  transcript_id AT4G13570.1  protein_id AT4G13570.1p  transcript_id AT4G13570.1  
At4g13564	chr4:007885251	0.0	C/7885251-7885462	AT4G13564.1  miRNA  gene_syn MICRORNA841A, MIR841A  gene MIR841A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UACGAGCCACUUGAAACUGAA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR841A (MICRORNA841A); miRNA  transcript_id AT4G13564.1  
At4g13572	chr4:007887440	0.0	W/7887440-7887638,7887944-7888049,7888136-7888194,7888355-7888433,7888527-7888638	AT4G13572.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT4G13572.1p  transcript_id AT4G13572.1  protein_id AT4G13572.1p  transcript_id AT4G13572.1  
At4g13575	chr4:007893559	0.0	C/7893559-7893607,7893403-7893476,7893289-7893324,7893091-7893189	AT4G13575.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G13575.1p  transcript_id AT4G13575.1  protein_id AT4G13575.1p  transcript_id AT4G13575.1  
At4g13580	chr4:007900427	0.0	W/7900427-7901161	AT4G13580.1  CDS  gene_syn T6G15.130, T6G15_130  go_component endomembrane system|GO:0012505||IEA  go_function molecular_function|GO:0003674||ND  product disease resistance-responsive family protein  note disease resistance-responsive family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: disease resistance-responsive family protein (TAIR:AT3G24020.1); Has 388 Blast hits to 387 proteins in 32 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 384; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G13580.1p  transcript_id AT4G13580.1  protein_id AT4G13580.1p  transcript_id AT4G13580.1  
At4g13590	chr4:007903651	0.0	C/7903651-7903792,7903342-7903498,7902533-7902716,7902375-7902422,7902178-7902274,7901844-7902073,7901706-7901756,7901518-7901622,7901369-7901434	AT4G13590.1  CDS  gene_syn T6G15.140, T6G15_140  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast inner membrane|GO:0009706|12766230|IDA  product unknown protein  note unknown protein; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0016 (InterPro:IPR001727); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64150.1); Has 1187 Blast hits to 1119 proteins in 441 species: Archae - 10; Bacteria - 644; Metazoa - 134; Fungi - 113; Plants - 109; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).  protein_id AT4G13590.1p  transcript_id AT4G13590.1  protein_id AT4G13590.1p  transcript_id AT4G13590.1  
At4g13600	chr4:007912481	0.0	C/7912481-7912892,7912215-7912248,7911179-7911428	AT4G13600.1  CDS  gene_syn T6G15.150, T6G15_150  product unknown protein  note EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: E13L3 (GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 3); callose binding / polysaccharide binding (TAIR:AT5G08000.1); Has 804 Blast hits to 768 proteins in 66 species: Archae - 0; Bacteria - 9; Metazoa - 8; Fungi - 36; Plants - 728; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT4G13600.1p  transcript_id AT4G13600.1  protein_id AT4G13600.1p  transcript_id AT4G13600.1  
At4g13610	chr4:007915022	0.0	W/7915022-7915190,7915365-7916239,7916341-7916408,7917201-7918704,7918821-7918985,7919089-7919272,7919357-7919468,7919528-7919708,7919793-7919990,7920123-7920401,7920525-7920653,7920738-7920953,7921097-7921231	AT4G13610.1  CDS  gene_syn MEE57, T6G15.160, T6G15_160, maternal effect embryo arrest 57  gene MEE57  go_component nucleus|GO:0005634||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA (cytosine-5-)-methyltransferase activity|GO:0003886||IEA  go_function protein binding|GO:0005515||IEA  go_process DNA methylation|GO:0006306||ISS  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function DNA (cytosine-5-)-methyltransferase activity|GO:0003886||ISS  product MEE57 (maternal effect embryo arrest 57); DNA (cytosine-5-)-methyltransferase/ DNA binding / protein binding  note maternal effect embryo arrest 57 (MEE57); FUNCTIONS IN: protein binding, DNA binding, DNA (cytosine-5-)-methyltransferase activity; INVOLVED IN: embryonic development ending in seed dormancy, DNA methylation; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA (cytosine-5)-methyltransferase 1 (InterPro:IPR017198), C-5 cytosine-specific DNA methylase (InterPro:IPR001525), Bromo adjacent region (InterPro:IPR001025), C-5 cytosine-specific DNA methylase, active site (InterPro:IPR018117); BEST Arabidopsis thaliana protein match is: DMT2 (DNA METHYLTRANSFERASE 2); DNA (cytosine-5-)-methyltransferase/ DNA binding / protein binding (TAIR:AT4G14140.1); Has 4029 Blast hits to 3598 proteins in 774 species: Archae - 122; Bacteria - 2061; Metazoa - 256; Fungi - 106; Plants - 219; Viruses - 66; Other Eukaryotes - 1199 (source: NCBI BLink).  protein_id AT4G13610.1p  transcript_id AT4G13610.1  protein_id AT4G13610.1p  transcript_id AT4G13610.1  
At4g13611	chr4:007922356	0.0	W/7922356-7922657	AT4G13611.1  pseudogenic_transcript  pseudo  function Pseudogene of AT3G56530; ANAC064 (Arabidopsis NAC domain containing protein 64); transcription factor  
At4g13615	chr4:007924353	0.0	W/7924353-7924359,7924665-7924767,7924912-7925017	AT4G13615.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product four F5 protein-related / 4F5 protein-related  note four F5 protein-related / 4F5 protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Four F5 protein (InterPro:IPR007513); Has 105 Blast hits to 105 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 52; Fungi - 6; Plants - 43; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G13615.1p  transcript_id AT4G13615.1  protein_id AT4G13615.1p  transcript_id AT4G13615.1  
At4g13620	chr4:007932138	0.0	W/7932138-7933304	AT4G13620.1  CDS  gene_syn F18A5.10, F18A5_10  function encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT1G22190.1); Has 3639 Blast hits to 3627 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3623; Viruses - 2; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT4G13620.1p  transcript_id AT4G13620.1  protein_id AT4G13620.1p  transcript_id AT4G13620.1  
At4g13630	chr4:007935480	0.0	C/7935480-7936029,7934286-7935403,7934093-7934134	AT4G13630.1  CDS  gene_syn F18A5.20, F18A5_20  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G04890.1); Has 437 Blast hits to 416 proteins in 70 species: Archae - 0; Bacteria - 7; Metazoa - 149; Fungi - 20; Plants - 205; Viruses - 2; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT4G13630.1p  transcript_id AT4G13630.1  protein_id AT4G13630.1p  transcript_id AT4G13630.1  
At4g13640	chr4:007938314	0.0	C/7938314-7938497,7937963-7938039,7937800-7937854,7937631-7937709,7937483-7937552,7936864-7937277	AT4G13640.1  CDS  gene_syn F18A5.30, F18A5_30, UNE16, unfertilized embryo sac 16  gene UNE16  go_process double fertilization forming a zygote and endosperm|GO:0009567|15634699|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product UNE16 (unfertilized embryo sac 16); transcription factor  note unfertilized embryo sac 16 (UNE16); FUNCTIONS IN: transcription factor activity; INVOLVED IN: double fertilization forming a zygote and endosperm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT3G24120.1); Has 906 Blast hits to 896 proteins in 41 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 893; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT4G13640.1p  transcript_id AT4G13640.1  protein_id AT4G13640.1p  transcript_id AT4G13640.1  
At4g13640	chr4:007938314	0.0	C/7938314-7938497,7937963-7938039,7937800-7937854,7937631-7937709,7937483-7937552,7936864-7937286	AT4G13640.2  CDS  gene_syn F18A5.30, F18A5_30, UNE16, unfertilized embryo sac 16  gene UNE16  go_process double fertilization forming a zygote and endosperm|GO:0009567|15634699|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product UNE16 (unfertilized embryo sac 16); transcription factor  note unfertilized embryo sac 16 (UNE16); FUNCTIONS IN: transcription factor activity; INVOLVED IN: double fertilization forming a zygote and endosperm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT3G24120.2); Has 907 Blast hits to 897 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 896; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT4G13640.2p  transcript_id AT4G13640.2  protein_id AT4G13640.2p  transcript_id AT4G13640.2  
At4g13650	chr4:007942767	0.0	C/7942767-7942898,7939611-7942673	AT4G13650.1  CDS  gene_syn F18A5.40, F18A5_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, pedicel, flower, seed; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16480.1); Has 22085 Blast hits to 5294 proteins in 183 species: Archae - 2; Bacteria - 10; Metazoa - 144; Fungi - 117; Plants - 21336; Viruses - 0; Other Eukaryotes - 476 (source: NCBI BLink).  protein_id AT4G13650.1p  transcript_id AT4G13650.1  protein_id AT4G13650.1p  transcript_id AT4G13650.1  
At4g13660	chr4:007946283	0.0	W/7946283-7946630,7947239-7947479,7947599-7947802,7948092-7948252	AT4G13660.1  CDS  gene_syn ATPRR2, F18A5.50, F18A5_50, PINORESINOL REDUCTASE 2, PRR2, PSEUDO-RESPONSE REGULATOR 2  gene PRR2  function Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems. Shows preference for pinoresinol and not lariciresinol.  go_component cellular_component|GO:0005575||ND  go_process lignan biosynthetic process|GO:0009807|18347017|IDA  go_function pinoresinol reductase activity|GO:0010283|10066819|ISS  go_function pinoresinol reductase activity|GO:0010283|18347017|IDA  product PRR2 (PINORESINOL REDUCTASE 2); pinoresinol reductase  note PINORESINOL REDUCTASE 2 (PRR2); FUNCTIONS IN: pinoresinol reductase activity; INVOLVED IN: lignan biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: PRR1 (PINORESINOL REDUCTASE 1); pinoresinol reductase (TAIR:AT1G32100.1); Has 939 Blast hits to 939 proteins in 216 species: Archae - 12; Bacteria - 241; Metazoa - 3; Fungi - 241; Plants - 354; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT4G13660.1p  transcript_id AT4G13660.1  protein_id AT4G13660.1p  transcript_id AT4G13660.1  
At4g13670	chr4:007948644	0.0	W/7948644-7949216,7949429-7949524,7949614-7949727,7950142-7950388,7950554-7950591,7950684-7950779	AT4G13670.1  CDS  gene_syn F18A5.60, F18A5_60, PLASTID TRANSCRIPTIONALLY ACTIVE5, PTAC5  gene PTAC5  go_component nucleoid|GO:0009295|16326926|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process protein folding|GO:0006457||IEA  go_process metabolic process|GO:0008152||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component plastid chromosome|GO:0009508|16326926|IDA  product PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5); heat shock protein binding / unfolded protein binding  note PLASTID TRANSCRIPTIONALLY ACTIVE5 (PTAC5); FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding, metabolic process; LOCATED IN: plastid chromosome, chloroplast thylakoid membrane, chloroplast, nucleoid, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidoglycan binding-like (InterPro:IPR002477), Heat shock protein DnaJ, cysteine-rich region (InterPro:IPR001305); Has 536 Blast hits to 528 proteins in 143 species: Archae - 7; Bacteria - 168; Metazoa - 136; Fungi - 16; Plants - 42; Viruses - 2; Other Eukaryotes - 165 (source: NCBI BLink).  protein_id AT4G13670.1p  transcript_id AT4G13670.1  protein_id AT4G13670.1p  transcript_id AT4G13670.1  
At4g13680	chr4:007951716	0.0	C/7951716-7952780	AT4G13680.1  CDS  gene_syn F18A5.70, F18A5_70  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55270.1); Has 119 Blast hits to 117 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 119; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G13680.1p  transcript_id AT4G13680.1  protein_id AT4G13680.1p  transcript_id AT4G13680.1  
At4g13690	chr4:007955301	0.0	C/7955301-7955380,7955113-7955203,7954385-7954700,7953873-7954010,7953662-7953786	AT4G13690.1  CDS  gene_syn F18A5.80, F18A5_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, sperm cell, embryo, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 28 Blast hits to 28 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G13690.1p  transcript_id AT4G13690.1  protein_id AT4G13690.1p  transcript_id AT4G13690.1  
At4g13700	chr4:007958667	0.0	C/7958667-7958919,7958371-7958562,7957960-7958296,7957646-7957863,7957372-7957562,7957072-7957257	AT4G13700.1  CDS  gene_syn ATPAP23, F18A5.90, F18A5_90, PAP23, PURPLE ACID PHOSPHATASE 23  gene PAP23  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function acid phosphatase activity|GO:0003993|16244908|IDA  go_function acid phosphatase activity|GO:0003993|16244908|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PAP23 (PURPLE ACID PHOSPHATASE 23); acid phosphatase/ protein serine/threonine phosphatase  note PURPLE ACID PHOSPHATASE 23 (PAP23); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Purple acid phosphatase, N-terminal (InterPro:IPR015914), Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: PAP15 (PURPLE ACID PHOSPHATASE 15); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT3G07130.1); Has 1340 Blast hits to 1333 proteins in 279 species: Archae - 5; Bacteria - 413; Metazoa - 190; Fungi - 58; Plants - 427; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).  protein_id AT4G13700.1p  transcript_id AT4G13700.1  protein_id AT4G13700.1p  transcript_id AT4G13700.1  
At4g13710	chr4:007962550	0.0	W/7962550-7962653,7962949-7963005,7963194-7963250,7963727-7963813,7964646-7965288,7965375-7965478,7965564-7965702,7965791-7966012	AT4G13710.1  CDS  gene_syn F18A5.100, F18A5_100  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function lyase activity|GO:0016829||ISS  go_function pectate lyase activity|GO:0030570||ISS  product pectate lyase family protein  note pectate lyase family protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectate lyase family protein (TAIR:AT1G04680.1); Has 881 Blast hits to 876 proteins in 159 species: Archae - 0; Bacteria - 369; Metazoa - 0; Fungi - 103; Plants - 403; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G13710.1p  transcript_id AT4G13710.1  protein_id AT4G13710.1p  transcript_id AT4G13710.1  
At4g13720	chr4:007968759	0.0	C/7968759-7968894,7968606-7968670,7968330-7968393,7968213-7968222,7967783-7967814,7967577-7967689,7967399-7967475,7967166-7967289	AT4G13720.1  CDS  gene_syn F18A5.110, F18A5_110  go_function hydrolase activity|GO:0016787||IEA  go_process biological_process|GO:0008150||ND  go_function pyrophosphatase activity|GO:0016462||ISS  product inosine triphosphate pyrophosphatase, putative / HAM1 family protein  note inosine triphosphate pyrophosphatase, putative / HAM1 family protein; FUNCTIONS IN: hydrolase activity, pyrophosphatase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ham1-like protein (InterPro:IPR002637); Has 4493 Blast hits to 4493 proteins in 1469 species: Archae - 141; Bacteria - 2387; Metazoa - 137; Fungi - 111; Plants - 30; Viruses - 1; Other Eukaryotes - 1686 (source: NCBI BLink).  protein_id AT4G13720.1p  transcript_id AT4G13720.1  protein_id AT4G13720.1p  transcript_id AT4G13720.1  
At4g13730	chr4:007970299	0.0	W/7970299-7970616,7970700-7970792,7971110-7971214,7971866-7972018,7972574-7972672,7972775-7972903,7973044-7973223,7973497-7973613,7973900-7974055	AT4G13730.1  CDS  gene_syn F18A5.120, F18A5_120  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of Rab GTPase activity|GO:0032313||IEA  go_function RAB GTPase activator activity|GO:0005097||IEA  product RabGAP/TBC domain-containing protein  note RabGAP/TBC domain-containing protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: RabGAP/TBC domain-containing protein (TAIR:AT1G04830.1); Has 3013 Blast hits to 2943 proteins in 166 species: Archae - 0; Bacteria - 2; Metazoa - 1661; Fungi - 480; Plants - 300; Viruses - 0; Other Eukaryotes - 570 (source: NCBI BLink).  protein_id AT4G13730.1p  transcript_id AT4G13730.1  protein_id AT4G13730.1p  transcript_id AT4G13730.1  
At4g13730	chr4:007970299	0.0	W/7970299-7970616,7970700-7970792,7971110-7971214,7971866-7972018,7972574-7972672,7972775-7972903,7973044-7973223,7973497-7973644,7973900-7973901	AT4G13730.2  CDS  gene_syn F18A5.120, F18A5_120  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of Rab GTPase activity|GO:0032313||IEA  go_function RAB GTPase activator activity|GO:0005097||IEA  product RabGAP/TBC domain-containing protein  note RabGAP/TBC domain-containing protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: RabGAP/TBC domain-containing protein (TAIR:AT1G04830.1); Has 2904 Blast hits to 2848 proteins in 167 species: Archae - 0; Bacteria - 2; Metazoa - 1647; Fungi - 428; Plants - 290; Viruses - 0; Other Eukaryotes - 537 (source: NCBI BLink).  protein_id AT4G13730.2p  transcript_id AT4G13730.2  protein_id AT4G13730.2p  transcript_id AT4G13730.2  
At4g13750	chr4:007975191	0.0	W/7975191-7975970,7976057-7976394,7976545-7977103,7977219-7977332,7978963-7979128,7979401-7981082,7981458-7981667,7981878-7984118,7984401-7984513,7984986-7985382,7985469-7985783,7986078-7986335,7986542-7987558	AT4G13750.1  CDS  gene_syn F18A5.140, F18A5_140  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product ATP binding  note ATP binding; FUNCTIONS IN: ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATP-binding region, ATPase-like (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G08300.1); Has 382 Blast hits to 326 proteins in 101 species: Archae - 8; Bacteria - 60; Metazoa - 115; Fungi - 38; Plants - 83; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT4G13750.1p  transcript_id AT4G13750.1  protein_id AT4G13750.1p  transcript_id AT4G13750.1  
At4g13760	chr4:007988058	0.0	W/7988058-7988201,7988305-7988616,7988800-7989324,7989415-7989648	AT4G13760.1  CDS  gene_syn F18A5.150, F18A5_150  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product polygalacturonase  note polygalacturonase; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Parallel beta-helix repeat (InterPro:IPR006626), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT2G40310.1); Has 2399 Blast hits to 2390 proteins in 300 species: Archae - 2; Bacteria - 438; Metazoa - 8; Fungi - 987; Plants - 888; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT4G13760.1p  transcript_id AT4G13760.1  protein_id AT4G13760.1p  transcript_id AT4G13760.1  
At4g13770	chr4:007991398	0.0	C/7991398-7992282,7990682-7991305	AT4G13770.1  CDS  gene_syn CYP83A1, CYTOCHROME P450 83A1, CYTOCHROME P450 MONOOXYGENASE, F18A5.160, F18A5_160, REDUCED EPIDERMAL FLUORESCENCE 2, REF2  gene CYP83A1  function Encodes a cytochrome p450 enzyme that catalyzes the initial conversion of aldoximes to thiohydroximates in the synthesis of glucosinolates not derived from tryptophan. Also has a role in auxin homeostasis.  go_process response to UV|GO:0009411||NAS  go_process glucosinolate biosynthetic process|GO:0019761|11553739|IDA  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen|GO:0016709|12970475|IDA  go_function oxygen binding|GO:0019825||ISS  product CYP83A1 (CYTOCHROME P450 83A1); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen / oxygen binding  note CYTOCHROME P450 83A1 (CYP83A1); FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, oxygen binding; INVOLVED IN: glucosinolate biosynthetic process, response to UV; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP83B1 (CYTOCHROME P450 MONOOXYGENASE 83B1); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen / oxygen binding (TAIR:AT4G31500.1); Has 23872 Blast hits to 23671 proteins in 1261 species: Archae - 21; Bacteria - 2086; Metazoa - 10504; Fungi - 4543; Plants - 5841; Viruses - 3; Other Eukaryotes - 874 (source: NCBI BLink).  protein_id AT4G13770.1p  transcript_id AT4G13770.1  protein_id AT4G13770.1p  transcript_id AT4G13770.1  
At4g13780	chr4:007998316	0.0	C/7998316-7998433,7997836-7997980,7997414-7997567,7997120-7997275,7996418-7996648,7996203-7996346,7995896-7995986,7995676-7995782,7995452-7995572,7995012-7995124,7994848-7994913,7994642-7994770,7994414-7994551,7994202-7994316,7993879-7994111,7993689-7993790,7993366-7993596	AT4G13780.1  CDS  gene_syn F18A5.170, F18A5_170  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function tRNA binding|GO:0000049||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function methionine-tRNA ligase activity|GO:0004825||IEA  go_function ATP binding|GO:0005524||IEA  go_component cytosol|GO:0005829|16297076|TAS  go_process methionyl-tRNA aminoacylation|GO:0006431||ISS  go_function methionine-tRNA ligase activity|GO:0004825||ISS  product methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative  note methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative; FUNCTIONS IN: methionine-tRNA ligase activity, tRNA binding, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion, methionyl-tRNA aminoacylation; LOCATED IN: cytosol; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Aminoacyl-tRNA synthetase, class I (M) (InterPro:IPR015413), Methionyl-tRNA synthetase, class Ia (InterPro:IPR002304), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Methionyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR014758), tRNA-binding region (InterPro:IPR002547); BEST Arabidopsis thaliana protein match is: tRNA-binding region domain-containing protein (TAIR:AT2G40660.1); Has 12421 Blast hits to 12391 proteins in 1665 species: Archae - 324; Bacteria - 5389; Metazoa - 513; Fungi - 358; Plants - 127; Viruses - 3; Other Eukaryotes - 5707 (source: NCBI BLink).  protein_id AT4G13780.1p  transcript_id AT4G13780.1  protein_id AT4G13780.1p  transcript_id AT4G13780.1  
At4g13790	chr4:007999846	0.0	C/7999846-8000124	AT4G13790.1  CDS  gene_syn F18A5.180, F18A5_180  go_process response to auxin stimulus|GO:0009733||ISS  go_process response to red light|GO:0010114|17076805|IEP  go_process response to far red light|GO:0010218|17076805|IEP  go_function molecular_function|GO:0003674||ND  product auxin-responsive protein, putative  note auxin-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus, response to red light, response to far red light; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: SAUR15 (SMALL AUXIN UPREGULATED 15) (TAIR:AT4G38850.1); Has 617 Blast hits to 606 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 616; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G13790.1p  transcript_id AT4G13790.1  protein_id AT4G13790.1p  transcript_id AT4G13790.1  
At4g13800	chr4:008003729	0.0	C/8003729-8003858,8003574-8003630,8003273-8003363,8003030-8003190,8002819-8002946,8002595-8002732,8002429-8002521,8002129-8002341	AT4G13800.1  CDS  gene_syn F18A5.190, F18A5_190  go_component plasma membrane|GO:0005886|14506206|IDA  go_process biological_process|GO:0008150||ND  product permease-related  note permease-related; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF803 (InterPro:IPR008521); BEST Arabidopsis thaliana protein match is: permease-related (TAIR:AT3G23870.1); Has 874 Blast hits to 855 proteins in 148 species: Archae - 0; Bacteria - 52; Metazoa - 363; Fungi - 242; Plants - 145; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT4G13800.1p  transcript_id AT4G13800.1  protein_id AT4G13800.1p  transcript_id AT4G13800.1  
At4g13810	chr4:008005062	0.0	C/8005062-8007287	AT4G13810.1  CDS  gene_syn AtRLP47, F18A5.200, F18A5_200, Receptor Like Protein 47  gene AtRLP47  go_process defense response|GO:0006952||ISS  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product AtRLP47 (Receptor Like Protein 47); protein binding  note Receptor Like Protein 47 (AtRLP47); FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction, defense response; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP50 (Receptor Like Protein 50); kinase/ protein binding (TAIR:AT4G13920.1); Has 58892 Blast hits to 17831 proteins in 817 species: Archae - 35; Bacteria - 4289; Metazoa - 16454; Fungi - 739; Plants - 32775; Viruses - 28; Other Eukaryotes - 4572 (source: NCBI BLink).  protein_id AT4G13810.1p  transcript_id AT4G13810.1  protein_id AT4G13810.1p  transcript_id AT4G13810.1  
At4g13820	chr4:008008535	0.0	C/8008535-8010694	AT4G13820.1  CDS  gene_syn F18A5.210, F18A5_210  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  go_function kinase activity|GO:0016301||ISS  product disease resistance family protein / LRR family protein  note disease resistance family protein / LRR family protein; FUNCTIONS IN: protein binding, kinase activity; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: stem, leaf whorl, hypocotyl, root, leaf; EXPRESSED DURING: LP.06 six leaves visible; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP50 (Receptor Like Protein 50); kinase/ protein binding (TAIR:AT4G13920.1); Has 52051 Blast hits to 16651 proteins in 741 species: Archae - 20; Bacteria - 2791; Metazoa - 12150; Fungi - 442; Plants - 33000; Viruses - 20; Other Eukaryotes - 3628 (source: NCBI BLink).  protein_id AT4G13820.1p  transcript_id AT4G13820.1  protein_id AT4G13820.1p  transcript_id AT4G13820.1  
At4g13830	chr4:008011518	0.0	W/8011518-8011970,8012437-8012577	AT4G13830.2  CDS  gene_syn DNAJ-LIKE 20, F18A5.220, F18A5_220, J20  gene J20  function DnaJ-like protein (J20); nuclear gene  go_function heat shock protein binding|GO:0031072||IEA  go_process protein folding|GO:0006457||ISS  product J20 (DNAJ-LIKE 20); heat shock protein binding  note DNAJ-LIKE 20 (J20); FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT4G39960.1); Has 15787 Blast hits to 15786 proteins in 1904 species: Archae - 116; Bacteria - 5334; Metazoa - 3149; Fungi - 1415; Plants - 1097; Viruses - 8; Other Eukaryotes - 4668 (source: NCBI BLink).  protein_id AT4G13830.2p  transcript_id AT4G13830.2  protein_id AT4G13830.2p  transcript_id AT4G13830.2  
At4g13830	chr4:008011518	0.0	W/8011518-8011985	AT4G13830.1  CDS  gene_syn DNAJ-LIKE 20, F18A5.220, F18A5_220, J20  gene J20  function DnaJ-like protein (J20); nuclear gene  go_function heat shock protein binding|GO:0031072||IEA  go_process protein folding|GO:0006457||ISS  product J20 (DNAJ-LIKE 20); heat shock protein binding  note DNAJ-LIKE 20 (J20); FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT4G39960.1); Has 15709 Blast hits to 15708 proteins in 1903 species: Archae - 116; Bacteria - 5325; Metazoa - 3125; Fungi - 1406; Plants - 1089; Viruses - 8; Other Eukaryotes - 4640 (source: NCBI BLink).  protein_id AT4G13830.1p  transcript_id AT4G13830.1  protein_id AT4G13830.1p  transcript_id AT4G13830.1  
At4g13840	chr4:008015886	0.0	C/8015886-8016326,8014088-8014933	AT4G13840.1  CDS  gene_syn F18A5.230, F18A5_230  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT3G23840.1); Has 613 Blast hits to 613 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 611; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G13840.1p  transcript_id AT4G13840.1  protein_id AT4G13840.1p  transcript_id AT4G13840.1  
At4g13850	chr4:008021314	0.0	W/8021314-8021434,8021532-8021600,8021683-8021789,8021886-8021934,8022022-8022065	AT4G13850.4  CDS  gene_syn ATGRP2, F18A5.240, F18A5_240, GLYCINE RICH PROTEIN 2, GLYCINE-RICH RNA-BINDING PROTEIN, GLYCINE-RICH RNA-BINDING PROTEIN 2, GR-RBP2, GRP2  gene GR-RBP2  function Encodes a glycine-rich RNA-binding protein. Gene expression is induced by cold.  go_component mitochondrion|GO:0005739|17137349|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|11743114|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process response to osmotic stress|GO:0006970|17376161|IMP  go_process response to cold|GO:0009409|16207746|IEP  go_process response to cold|GO:0009409|17169986|IGI  go_process response to cold|GO:0009409|17376161|IMP  go_process seed germination|GO:0009845|17376161|IMP  go_function double-stranded DNA binding|GO:0003690|16207746|IDA  go_function single-stranded DNA binding|GO:0003697|16207746|IDA  go_function RNA binding|GO:0003723||ISS  product GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2); ATP binding / RNA binding / double-stranded DNA binding / single-stranded DNA binding  note GLYCINE-RICH RNA-BINDING PROTEIN 2 (ATGRP2); FUNCTIONS IN: double-stranded DNA binding, single-stranded DNA binding, RNA binding, ATP binding; INVOLVED IN: response to cold, seed germination, response to osmotic stress; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4); RNA binding / double-stranded DNA binding / single-stranded DNA binding (TAIR:AT3G23830.2); Has 21289 Blast hits to 15937 proteins in 632 species: Archae - 10; Bacteria - 1153; Metazoa - 12355; Fungi - 2417; Plants - 3176; Viruses - 0; Other Eukaryotes - 2178 (source: NCBI BLink).  protein_id AT4G13850.4p  transcript_id AT4G13850.4  protein_id AT4G13850.4p  transcript_id AT4G13850.4  
At4g13850	chr4:008021314	0.0	W/8021314-8021434,8021532-8021600,8021683-8021789,8021886-8021970,8021986-8022065	AT4G13850.2  CDS  gene_syn ATGRP2, F18A5.240, F18A5_240, GLYCINE RICH PROTEIN 2, GLYCINE-RICH RNA-BINDING PROTEIN, GLYCINE-RICH RNA-BINDING PROTEIN 2, GR-RBP2, GRP2  gene GR-RBP2  function Encodes a glycine-rich RNA-binding protein. Gene expression is induced by cold.  go_component mitochondrion|GO:0005739|17137349|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|11743114|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process response to osmotic stress|GO:0006970|17376161|IMP  go_process response to cold|GO:0009409|16207746|IEP  go_process response to cold|GO:0009409|17169986|IGI  go_process response to cold|GO:0009409|17376161|IMP  go_process seed germination|GO:0009845|17376161|IMP  go_function double-stranded DNA binding|GO:0003690|16207746|IDA  go_function single-stranded DNA binding|GO:0003697|16207746|IDA  go_function RNA binding|GO:0003723||ISS  product GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2); ATP binding / RNA binding / double-stranded DNA binding / single-stranded DNA binding  note GLYCINE-RICH RNA-BINDING PROTEIN 2 (ATGRP2); FUNCTIONS IN: double-stranded DNA binding, single-stranded DNA binding, RNA binding, ATP binding; INVOLVED IN: response to cold, seed germination, response to osmotic stress; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4); RNA binding / double-stranded DNA binding / single-stranded DNA binding (TAIR:AT3G23830.2); Has 44024 Blast hits to 23232 proteins in 1011 species: Archae - 24; Bacteria - 4464; Metazoa - 22265; Fungi - 3763; Plants - 8955; Viruses - 180; Other Eukaryotes - 4373 (source: NCBI BLink).  protein_id AT4G13850.2p  transcript_id AT4G13850.2  protein_id AT4G13850.2p  transcript_id AT4G13850.2  
At4g13850	chr4:008021314	0.0	W/8021314-8021434,8021532-8021600,8021683-8021789,8021886-8021973,8022016-8022065	AT4G13850.3  CDS  gene_syn ATGRP2, F18A5.240, F18A5_240, GLYCINE RICH PROTEIN 2, GLYCINE-RICH RNA-BINDING PROTEIN, GLYCINE-RICH RNA-BINDING PROTEIN 2, GR-RBP2, GRP2  gene GR-RBP2  function Encodes a glycine-rich RNA-binding protein. Gene expression is induced by cold.  go_component mitochondrion|GO:0005739|17137349|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|11743114|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process response to osmotic stress|GO:0006970|17376161|IMP  go_process response to cold|GO:0009409|16207746|IEP  go_process response to cold|GO:0009409|17169986|IGI  go_process response to cold|GO:0009409|17376161|IMP  go_process seed germination|GO:0009845|17376161|IMP  go_function double-stranded DNA binding|GO:0003690|16207746|IDA  go_function single-stranded DNA binding|GO:0003697|16207746|IDA  go_function RNA binding|GO:0003723||ISS  product GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2); ATP binding / RNA binding / double-stranded DNA binding / single-stranded DNA binding  note GLYCINE-RICH RNA-BINDING PROTEIN 2 (ATGRP2); FUNCTIONS IN: double-stranded DNA binding, single-stranded DNA binding, RNA binding, ATP binding; INVOLVED IN: response to cold, seed germination, response to osmotic stress; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4); RNA binding / double-stranded DNA binding / single-stranded DNA binding (TAIR:AT3G23830.2); Has 24766 Blast hits to 17699 proteins in 704 species: Archae - 16; Bacteria - 1514; Metazoa - 14291; Fungi - 2615; Plants - 3900; Viruses - 11; Other Eukaryotes - 2419 (source: NCBI BLink).  protein_id AT4G13850.3p  transcript_id AT4G13850.3  protein_id AT4G13850.3p  transcript_id AT4G13850.3  
At4g13850	chr4:008021314	0.0	W/8021314-8021434,8021532-8021600,8021683-8021789,8021886-8022065	AT4G13850.1  CDS  gene_syn ATGRP2, F18A5.240, F18A5_240, GLYCINE RICH PROTEIN 2, GLYCINE-RICH RNA-BINDING PROTEIN, GLYCINE-RICH RNA-BINDING PROTEIN 2, GR-RBP2, GRP2  gene GR-RBP2  function Encodes a glycine-rich RNA-binding protein. Gene expression is induced by cold.  go_component mitochondrion|GO:0005739|17137349|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|11743114|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process response to osmotic stress|GO:0006970|17376161|IMP  go_process response to cold|GO:0009409|16207746|IEP  go_process response to cold|GO:0009409|17169986|IGI  go_process response to cold|GO:0009409|17376161|IMP  go_process seed germination|GO:0009845|17376161|IMP  go_function double-stranded DNA binding|GO:0003690|16207746|IDA  go_function single-stranded DNA binding|GO:0003697|16207746|IDA  go_function RNA binding|GO:0003723||ISS  product GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2); ATP binding / RNA binding / double-stranded DNA binding / single-stranded DNA binding  note GLYCINE-RICH RNA-BINDING PROTEIN 2 (GR-RBP2); FUNCTIONS IN: double-stranded DNA binding, single-stranded DNA binding, RNA binding, ATP binding; INVOLVED IN: response to cold, seed germination, response to osmotic stress; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4); RNA binding / double-stranded DNA binding / single-stranded DNA binding (TAIR:AT3G23830.2); Has 68851 Blast hits to 28598 proteins in 1252 species: Archae - 63; Bacteria - 14471; Metazoa - 29254; Fungi - 5023; Plants - 11759; Viruses - 973; Other Eukaryotes - 7308 (source: NCBI BLink).  protein_id AT4G13850.1p  transcript_id AT4G13850.1  protein_id AT4G13850.1p  transcript_id AT4G13850.1  
At4g13860	chr4:008022601	0.0	W/8022601-8022625,8022721-8022789,8022906-8023012,8023100-8023162	AT4G13860.1  CDS  gene_syn F18A5.250, F18A5_250  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product glycine-rich RNA-binding protein, putative  note glycine-rich RNA-binding protein, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2); ATP binding / RNA binding / double-stranded DNA binding / single-stranded DNA binding (TAIR:AT4G13850.4); Has 20625 Blast hits to 15554 proteins in 614 species: Archae - 10; Bacteria - 1109; Metazoa - 12326; Fungi - 2038; Plants - 3107; Viruses - 0; Other Eukaryotes - 2035 (source: NCBI BLink).  protein_id AT4G13860.1p  transcript_id AT4G13860.1  protein_id AT4G13860.1p  transcript_id AT4G13860.1  
At4g13870	chr4:008025287	0.0	C/8025287-8025542,8024879-8025049,8024300-8024430,8024054-8024212,8023754-8023864,8023563-8023592	AT4G13870.1  CDS  gene_syn ATWEX, ATWRNEXO, EXONUCLEASE, F18A5.260, F18A5_260, WERNER SYNDROME-LIKE EXONUCLEASE, WEX, WRNEXO  gene WRNEXO  function Encodes a protein with homology to the exonuclease domain of hWRN-p of human protein Werner Syndrome Exonuclease (WEX). Forms a complex with the heterodimeric factor Ku. The interaction with KU stimulates WEX exonuclease activity.  go_component intracellular|GO:0005622||IEA  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_component intracellular|GO:0005622||ISS  go_function nucleic acid binding|GO:0003676||ISS  go_function protein binding|GO:0005515|11058127|IPI  go_function protein binding|GO:0005515|16396834|IPI  go_function 3 -5  exonuclease activity|GO:0008408|16396834|IDA  go_function 3 -5  exonuclease activity|GO:0008408||ISS  product WRNEXO (WERNER SYNDROME-LIKE EXONUCLEASE); 3 -5  exonuclease/ nucleic acid binding / protein binding  note WERNER SYNDROME-LIKE EXONUCLEASE (WRNEXO); FUNCTIONS IN: protein binding, 3 -5  exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), 3&apos;-5&apos; exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: 3 -5  exonuclease-related (TAIR:AT4G13885.1); Has 601 Blast hits to 597 proteins in 163 species: Archae - 0; Bacteria - 101; Metazoa - 221; Fungi - 58; Plants - 116; Viruses - 3; Other Eukaryotes - 102 (source: NCBI BLink).  protein_id AT4G13870.1p  transcript_id AT4G13870.1  protein_id AT4G13870.1p  transcript_id AT4G13870.1  
At4g13870	chr4:008025287	0.0	C/8025287-8025542,8024879-8025049,8024300-8024430,8024054-8024212,8023754-8023864,8023563-8023601	AT4G13870.2  CDS  gene_syn ATWEX, ATWRNEXO, EXONUCLEASE, F18A5.260, F18A5_260, WERNER SYNDROME-LIKE EXONUCLEASE, WEX, WRNEXO  gene WRNEXO  function Encodes a protein with homology to the exonuclease domain of hWRN-p of human protein Werner Syndrome Exonuclease (WEX). Forms a complex with the heterodimeric factor Ku. The interaction with KU stimulates WEX exonuclease activity.  go_component intracellular|GO:0005622||IEA  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_component intracellular|GO:0005622||ISS  go_function nucleic acid binding|GO:0003676||ISS  go_function protein binding|GO:0005515|11058127|IPI  go_function protein binding|GO:0005515|16396834|IPI  go_function 3 -5  exonuclease activity|GO:0008408|16396834|IDA  go_function 3 -5  exonuclease activity|GO:0008408||ISS  product WRNEXO (WERNER SYNDROME-LIKE EXONUCLEASE); 3 -5  exonuclease/ nucleic acid binding / protein binding  note WERNER SYNDROME-LIKE EXONUCLEASE (WRNEXO); FUNCTIONS IN: protein binding, 3 -5  exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), 3&apos;-5&apos; exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: 3 -5  exonuclease-related (TAIR:AT4G13885.1); Has 619 Blast hits to 615 proteins in 166 species: Archae - 0; Bacteria - 103; Metazoa - 221; Fungi - 60; Plants - 120; Viruses - 3; Other Eukaryotes - 112 (source: NCBI BLink).  protein_id AT4G13870.2p  transcript_id AT4G13870.2  protein_id AT4G13870.2p  transcript_id AT4G13870.2  
At4g13880	chr4:008026151	0.0	W/8026151-8026781,8027068-8028614	AT4G13880.1  CDS  gene_syn AtRLP48, F18A5.270, F18A5_270, Receptor Like Protein 48  gene AtRLP48  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product AtRLP48 (Receptor Like Protein 48); protein binding  note Receptor Like Protein 48 (AtRLP48); FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210); BEST Arabidopsis thaliana protein match is: AtRLP47 (Receptor Like Protein 47); protein binding (TAIR:AT4G13810.1); Has 49873 Blast hits to 16061 proteins in 732 species: Archae - 34; Bacteria - 3316; Metazoa - 11975; Fungi - 575; Plants - 30018; Viruses - 20; Other Eukaryotes - 3935 (source: NCBI BLink).  protein_id AT4G13880.1p  transcript_id AT4G13880.1  protein_id AT4G13880.1p  transcript_id AT4G13880.1  
At4g13885	chr4:008030650	0.0	C/8030650-8030754,8030338-8030510,8029868-8030046,8029642-8029775,8029517-8029567,8029103-8029213,8028911-8028949	AT4G13885.1  CDS  go_component intracellular|GO:0005622||IEA  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function 3 -5  exonuclease activity|GO:0008408||IEA  product 3 -5  exonuclease-related  note 3 -5  exonuclease-related; FUNCTIONS IN: 3 -5  exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), 3&apos;-5&apos; exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: WRNEXO (WERNER SYNDROME-LIKE EXONUCLEASE); 3 -5  exonuclease/ nucleic acid binding / protein binding (TAIR:AT4G13870.2); Has 108 Blast hits to 108 proteins in 34 species: Archae - 0; Bacteria - 8; Metazoa - 66; Fungi - 4; Plants - 28; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G13885.1p  transcript_id AT4G13885.1  protein_id AT4G13885.1p  transcript_id AT4G13885.1  
At4g13890	chr4:008032650	0.0	C/8032650-8033718,8032463-8032564,8032146-8032387	AT4G13890.1  CDS  gene_syn EDA36, EDA37, EMBRYO SAC DEVELOPMENT ARREST 36, EMBRYO SAC DEVELOPMENT ARREST 37, F18A5.280, F18A5_280, SERINE HYDROXYMETHYLTRANSFERASE 5, SHM5  gene EDA36  go_function catalytic activity|GO:0003824||IEA  go_function glycine hydroxymethyltransferase activity|GO:0004372||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_component cellular_component|GO:0005575||ND  go_process glycine metabolic process|GO:0006544||ISS  go_process L-serine metabolic process|GO:0006563||ISS  go_process pollen development|GO:0009555|19237690|IMP  go_process polar nucleus fusion|GO:0010197|15634699|IMP  go_function glycine hydroxymethyltransferase activity|GO:0004372||ISS  product EDA36 (EMBRYO SAC DEVELOPMENT ARREST 37); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding  note EMBRYO SAC DEVELOPMENT ARREST 37 (EDA36); FUNCTIONS IN: pyridoxal phosphate binding, glycine hydroxymethyltransferase activity, catalytic activity; INVOLVED IN: glycine metabolic process, polar nucleus fusion, L-serine metabolic process, pollen development; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Glycine hydroxymethyltransferase (InterPro:IPR001085); BEST Arabidopsis thaliana protein match is: SHM4 (serine hydroxymethyltransferase 4); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding (TAIR:AT4G13930.1); Has 8265 Blast hits to 8247 proteins in 1620 species: Archae - 141; Bacteria - 3462; Metazoa - 296; Fungi - 187; Plants - 240; Viruses - 6; Other Eukaryotes - 3933 (source: NCBI BLink).  protein_id AT4G13890.1p  transcript_id AT4G13890.1  protein_id AT4G13890.1p  transcript_id AT4G13890.1  
At4g13900	chr4:008035714	0.0	W/8035714-8041207	AT4G13900.1  pseudogenic_transcript  pseudo  gene_syn AT4G13910, AtRLP49, F18A5.290, F18A5_290, Receptor Like Protein 49  gene AtRLP49  note pseudogene, similar to NL0D, contains leucine rich-repeat domains Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-4A protein (Lycopersicon esculentum) gi|3097197|emb|CAA73187; blastp match of 33% identity and 2.9e-93 P-value to GP|4235641|gb|AAD13301.1||AF119040 NL0D {Lycopersicon esculentum}  
At4g13920	chr4:008043861	0.0	W/8043861-8046536	AT4G13920.1  CDS  gene_syn AtRLP50, DL3000W, FCAALL.223, Receptor Like Protein 50  gene AtRLP50  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  go_function kinase activity|GO:0016301||ISS  product AtRLP50 (Receptor Like Protein 50); kinase/ protein binding  note Receptor Like Protein 50 (AtRLP50); FUNCTIONS IN: protein binding, kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP47 (Receptor Like Protein 47); protein binding (TAIR:AT4G13810.1); Has 71813 Blast hits to 21234 proteins in 838 species: Archae - 55; Bacteria - 4519; Metazoa - 19253; Fungi - 803; Plants - 41557; Viruses - 44; Other Eukaryotes - 5582 (source: NCBI BLink).  protein_id AT4G13920.1p  transcript_id AT4G13920.1  protein_id AT4G13920.1p  transcript_id AT4G13920.1  
At4g13930	chr4:008049344	0.0	C/8049344-8050021,8048544-8048934,8048351-8048452,8048013-8048257	AT4G13930.1  CDS  gene_syn DL3005C, FCAALL.160, SERINE HYDROXYMETHYLTRANSFERASE 4, SHM4, serine hydroxymethyltransferase 4  gene SHM4  function Encodes a serine hydroxymethyltransferase maximally expressed in root  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function catalytic activity|GO:0003824||IEA  go_function glycine hydroxymethyltransferase activity|GO:0004372||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_component cytosol|GO:0005829|10806255|ISS  go_process glycine metabolic process|GO:0006544||ISS  go_process L-serine metabolic process|GO:0006563||ISS  go_function glycine hydroxymethyltransferase activity|GO:0004372||ISS  product SHM4 (serine hydroxymethyltransferase 4); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding  note serine hydroxymethyltransferase 4 (SHM4); FUNCTIONS IN: pyridoxal phosphate binding, glycine hydroxymethyltransferase activity, catalytic activity; INVOLVED IN: response to cadmium ion, glycine metabolic process, L-serine metabolic process; LOCATED IN: cytosol, plasma membrane, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Glycine hydroxymethyltransferase (InterPro:IPR001085); BEST Arabidopsis thaliana protein match is: EDA36 (EMBRYO SAC DEVELOPMENT ARREST 37); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding (TAIR:AT4G13890.1); Has 8280 Blast hits to 8261 proteins in 1621 species: Archae - 141; Bacteria - 3464; Metazoa - 297; Fungi - 187; Plants - 238; Viruses - 6; Other Eukaryotes - 3947 (source: NCBI BLink).  protein_id AT4G13930.1p  transcript_id AT4G13930.1  protein_id AT4G13930.1p  transcript_id AT4G13930.1  
At4g13940	chr4:008054931	0.0	W/8054931-8055242,8055378-8055641,8055930-8056676	AT4G13940.3  CDS  gene_syn ATSAHH1, DL3010W, EMB1395, EMBRYO DEFECTIVE 1395, FCAALL.35, HOG1, HOMOLOGY-DEPENDENT GENE SILENCING 1, MATERNAL EFFECT EMBRYO ARREST 58, MEE58, S-ADENOSYL-L-HOMOCYSTEIN HYDROLASE 1, S-ADENOSYL-L-HOMOCYSTEINE HYDROLASE, SAHH1  gene MEE58  function Encodes a S-adenosyl-L-homocysteine hydrolase required for DNA methylation-dependent gene silencing.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function copper ion binding|GO:0005507|16526091|IDA  go_process methylation-dependent chromatin silencing|GO:0006346|15659630|IMP  go_process one-carbon compound metabolic process|GO:0006730||ISS  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process posttranscriptional gene silencing|GO:0016441|9611181|IMP  go_function adenosylhomocysteinase activity|GO:0004013|15659630|IMP  go_function adenosylhomocysteinase activity|GO:0004013||ISS  product MEE58 (MATERNAL EFFECT EMBRYO ARREST 58); adenosylhomocysteinase/ copper ion binding  note HOMOLOGY-DEPENDENT GENE SILENCING 1 (HOG1); FUNCTIONS IN: adenosylhomocysteinase activity, copper ion binding; INVOLVED IN: embryonic development ending in seed dormancy, methylation-dependent chromatin silencing, one-carbon compound metabolic process, posttranscriptional gene silencing; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 34 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosyl-L-homocysteine hydrolase (InterPro:IPR000043), NAD(P)-binding (InterPro:IPR016040), S-adenosyl-L-homocysteine hydrolase, NAD binding (InterPro:IPR015878); BEST Arabidopsis thaliana protein match is: SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2); adenosylhomocysteinase/ binding / catalytic (TAIR:AT3G23810.1); Has 6531 Blast hits to 6528 proteins in 953 species: Archae - 144; Bacteria - 1374; Metazoa - 428; Fungi - 96; Plants - 162; Viruses - 0; Other Eukaryotes - 4327 (source: NCBI BLink).  protein_id AT4G13940.3p  transcript_id AT4G13940.3  protein_id AT4G13940.3p  transcript_id AT4G13940.3  
At4g13940	chr4:008054931	0.0	W/8054931-8055641,8055930-8056139,8056707-8056763	AT4G13940.4  CDS  gene_syn ATSAHH1, DL3010W, EMB1395, EMBRYO DEFECTIVE 1395, FCAALL.35, HOG1, HOMOLOGY-DEPENDENT GENE SILENCING 1, MATERNAL EFFECT EMBRYO ARREST 58, MEE58, S-ADENOSYL-L-HOMOCYSTEIN HYDROLASE 1, S-ADENOSYL-L-HOMOCYSTEINE HYDROLASE, SAHH1  gene MEE58  function Encodes a S-adenosyl-L-homocysteine hydrolase required for DNA methylation-dependent gene silencing.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process methylation-dependent chromatin silencing|GO:0006346|15659630|IMP  go_process one-carbon compound metabolic process|GO:0006730||ISS  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process posttranscriptional gene silencing|GO:0016441|9611181|IMP  go_function adenosylhomocysteinase activity|GO:0004013|15659630|IMP  go_function adenosylhomocysteinase activity|GO:0004013||ISS  product MEE58 (MATERNAL EFFECT EMBRYO ARREST 58); adenosylhomocysteinase  note HOMOLOGY-DEPENDENT GENE SILENCING 1 (HOG1); FUNCTIONS IN: adenosylhomocysteinase activity; INVOLVED IN: embryonic development ending in seed dormancy, methylation-dependent chromatin silencing, one-carbon compound metabolic process, posttranscriptional gene silencing; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosyl-L-homocysteine hydrolase (InterPro:IPR000043), NAD(P)-binding (InterPro:IPR016040), S-adenosyl-L-homocysteine hydrolase, NAD binding (InterPro:IPR015878); BEST Arabidopsis thaliana protein match is: SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2); adenosylhomocysteinase/ binding / catalytic (TAIR:AT3G23810.1); Has 5522 Blast hits to 5520 proteins in 936 species: Archae - 142; Bacteria - 1333; Metazoa - 400; Fungi - 91; Plants - 124; Viruses - 0; Other Eukaryotes - 3432 (source: NCBI BLink).  protein_id AT4G13940.4p  transcript_id AT4G13940.4  protein_id AT4G13940.4p  transcript_id AT4G13940.4  
At4g13940	chr4:008054931	0.0	W/8054931-8055641,8055930-8056676	AT4G13940.1  CDS  gene_syn ATSAHH1, DL3010W, EMB1395, EMBRYO DEFECTIVE 1395, FCAALL.35, HOG1, HOMOLOGY-DEPENDENT GENE SILENCING 1, MATERNAL EFFECT EMBRYO ARREST 58, MEE58, S-ADENOSYL-L-HOMOCYSTEIN HYDROLASE 1, S-ADENOSYL-L-HOMOCYSTEINE HYDROLASE, SAHH1  gene MEE58  function Encodes a S-adenosyl-L-homocysteine hydrolase required for DNA methylation-dependent gene silencing.  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function copper ion binding|GO:0005507|16526091|IDA  go_process methylation-dependent chromatin silencing|GO:0006346|15659630|IMP  go_process one-carbon compound metabolic process|GO:0006730||ISS  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process posttranscriptional gene silencing|GO:0016441|9611181|IMP  go_function adenosylhomocysteinase activity|GO:0004013|15659630|IMP  go_function adenosylhomocysteinase activity|GO:0004013||ISS  product MEE58 (MATERNAL EFFECT EMBRYO ARREST 58); adenosylhomocysteinase/ copper ion binding  note MATERNAL EFFECT EMBRYO ARREST 58 (MEE58); FUNCTIONS IN: adenosylhomocysteinase activity, copper ion binding; INVOLVED IN: embryonic development ending in seed dormancy, methylation-dependent chromatin silencing, one-carbon compound metabolic process, posttranscriptional gene silencing; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 35 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosyl-L-homocysteine hydrolase (InterPro:IPR000043), NAD(P)-binding (InterPro:IPR016040), S-adenosyl-L-homocysteine hydrolase, NAD binding (InterPro:IPR015878); BEST Arabidopsis thaliana protein match is: SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2); adenosylhomocysteinase/ binding / catalytic (TAIR:AT3G23810.1); Has 6542 Blast hits to 6538 proteins in 953 species: Archae - 144; Bacteria - 1375; Metazoa - 429; Fungi - 96; Plants - 164; Viruses - 0; Other Eukaryotes - 4334 (source: NCBI BLink).  protein_id AT4G13940.1p  transcript_id AT4G13940.1  protein_id AT4G13940.1p  transcript_id AT4G13940.1  
At4g13940	chr4:008055176	0.0	W/8055176-8055178,8055297-8055641,8055930-8056676	AT4G13940.2  CDS  gene_syn ATSAHH1, DL3010W, EMB1395, EMBRYO DEFECTIVE 1395, FCAALL.35, HOG1, HOMOLOGY-DEPENDENT GENE SILENCING 1, MATERNAL EFFECT EMBRYO ARREST 58, MEE58, S-ADENOSYL-L-HOMOCYSTEIN HYDROLASE 1, S-ADENOSYL-L-HOMOCYSTEINE HYDROLASE, SAHH1  gene MEE58  function Encodes a S-adenosyl-L-homocysteine hydrolase required for DNA methylation-dependent gene silencing.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function copper ion binding|GO:0005507|16526091|IDA  go_process methylation-dependent chromatin silencing|GO:0006346|15659630|IMP  go_process one-carbon compound metabolic process|GO:0006730||ISS  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process posttranscriptional gene silencing|GO:0016441|9611181|IMP  go_function adenosylhomocysteinase activity|GO:0004013|15659630|IMP  go_function adenosylhomocysteinase activity|GO:0004013||ISS  product MEE58 (MATERNAL EFFECT EMBRYO ARREST 58); adenosylhomocysteinase/ copper ion binding  note HOMOLOGY-DEPENDENT GENE SILENCING 1 (HOG1); FUNCTIONS IN: adenosylhomocysteinase activity, copper ion binding; INVOLVED IN: embryonic development ending in seed dormancy, methylation-dependent chromatin silencing, one-carbon compound metabolic process, posttranscriptional gene silencing; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 34 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosyl-L-homocysteine hydrolase (InterPro:IPR000043), NAD(P)-binding (InterPro:IPR016040), S-adenosyl-L-homocysteine hydrolase, NAD binding (InterPro:IPR015878); BEST Arabidopsis thaliana protein match is: SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2); adenosylhomocysteinase/ binding / catalytic (TAIR:AT3G23810.1); Has 5755 Blast hits to 5753 proteins in 953 species: Archae - 143; Bacteria - 1370; Metazoa - 421; Fungi - 96; Plants - 162; Viruses - 0; Other Eukaryotes - 3563 (source: NCBI BLink).  protein_id AT4G13940.2p  transcript_id AT4G13940.2  protein_id AT4G13940.2p  transcript_id AT4G13940.2  
At4g13950	chr4:008058268	0.0	C/8058268-8058609	AT4G13950.1  CDS  gene_syn DL3015C, FCAALL.121, RALFL31, ralf-like 31  gene RALFL31  function Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  go_component apoplast|GO:0048046|12611624|ISS  go_process cell-cell signaling|GO:0007267|12611624|ISS  go_function signal transducer activity|GO:0004871|12611624|TAS  product RALFL31 (ralf-like 31); signal transducer  note ralf-like 31 (RALFL31); FUNCTIONS IN: signal transducer activity; INVOLVED IN: cell-cell signaling; LOCATED IN: apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALFL24 (ralf-like 24); signal transducer (TAIR:AT3G23805.1); Has 142 Blast hits to 142 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 140; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G13950.1p  transcript_id AT4G13950.1  protein_id AT4G13950.1p  transcript_id AT4G13950.1  
At4g13955	chr4:008059307	0.0	W/8059307-8059385,8059537-8059742	AT4G13955.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13968.1); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G13955.1p  transcript_id AT4G13955.1  protein_id AT4G13955.1p  transcript_id AT4G13955.1  
At4g13960	chr4:008061870	0.0	C/8061870-8062231,8061711-8061827,8061320-8061662,8061105-8061245,8060681-8061022	AT4G13960.1  CDS  gene_syn DL3020C, FCAALL.53  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52650.1); Has 1324 Blast hits to 1292 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1324; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G13960.1p  transcript_id AT4G13960.1  protein_id AT4G13960.1p  transcript_id AT4G13960.1  
At4g13965	chr4:008066725	0.0	C/8066725-8067435,8066509-8066643,8066138-8066422	AT4G13965.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G55030.1); Has 1305 Blast hits to 1279 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 4; Plants - 1281; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT4G13965.1p  transcript_id AT4G13965.1  protein_id AT4G13965.1p  transcript_id AT4G13965.1  
At4g13968	chr4:008069134	0.0	W/8069134-8069206,8069705-8069901	AT4G13968.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13955.1); Has 12 Blast hits to 12 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 5; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G13968.1p  transcript_id AT4G13968.1  protein_id AT4G13968.1p  transcript_id AT4G13968.1  
At4g13970	chr4:008073863	0.0	C/8073863-8074134,8072813-8073464,8072534-8072733,8071849-8072093,8070696-8071663	AT4G13970.1  CDS  gene_syn DL3025C, FCAALL.54  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: SWIM zinc finger family protein (TAIR:AT1G60560.1); Has 39 Blast hits to 38 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G13970.1p  transcript_id AT4G13970.1  protein_id AT4G13970.1p  transcript_id AT4G13970.1  
At4g13980	chr4:008079002	0.0	C/8079002-8079247,8077519-8078673	AT4G13980.1  CDS  gene_syn AT-HSFA5, DL3030C, FCAALL.27, HEAT SHOCK TRANSCRIPTION FACTOR A5, HSFA5  gene AT-HSFA5  function member of Heat Stress Transcription Factor (Hsf) family  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AT-HSFA5; DNA binding / transcription factor  note AT-HSFA5; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: AT-HSFA4A; DNA binding / transcription factor (TAIR:AT4G18880.1); Has 1419 Blast hits to 1413 proteins in 166 species: Archae - 0; Bacteria - 8; Metazoa - 274; Fungi - 325; Plants - 524; Viruses - 0; Other Eukaryotes - 288 (source: NCBI BLink).  protein_id AT4G13980.1p  transcript_id AT4G13980.1  protein_id AT4G13980.1p  transcript_id AT4G13980.1  
At4g13985	chr4:008080710	0.0	C/8080710-8081669,8080486-8080626,8080118-8080396	AT4G13985.1  CDS  gene_syn FBD-ASSOCIATED F-BOX PROTEIN, FBD1  gene FBD1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product FBD1 (FBD-ASSOCIATED F-BOX PROTEIN)  note FBD-ASSOCIATED F-BOX PROTEIN (FBD1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G69630.1); Has 1323 Blast hits to 1289 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1323; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G13985.1p  transcript_id AT4G13985.1  protein_id AT4G13985.1p  transcript_id AT4G13985.1  
At4g13990	chr4:008084395	0.0	W/8084395-8085960	AT4G13990.1  CDS  gene_syn DL3035W, FCAALL.56  go_component cell wall|GO:0005618|16287169|IDA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product exostosin family protein  note exostosin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: MUR3 (MURUS 3); catalytic/ transferase, transferring glycosyl groups (TAIR:AT2G20370.1); Has 305 Blast hits to 304 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 286; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT4G13990.1p  transcript_id AT4G13990.1  protein_id AT4G13990.1p  transcript_id AT4G13990.1  
At4g13992	chr4:008087340	0.0	W/8087340-8089268	AT4G13992.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular signaling cascade; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT4G16015.1); Has 1471 Blast hits to 614 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 0; Plants - 1295; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT4G13992.1p  transcript_id AT4G13992.1  protein_id AT4G13992.1p  transcript_id AT4G13992.1  
At4g13996	chr4:008090146	0.0	C/8090146-8090446	AT4G13996.1  pseudogenic_transcript  pseudo  function Pseudogene of AT2G35345; unknown protein  
At4g14000	chr4:008090851	0.0	W/8090851-8090979,8091071-8091133,8091217-8091283,8091372-8091472,8091562-8091606,8091690-8091971,8092059-8092161,8092265-8092347	AT4G14000.1  CDS  gene_syn DL3040W, FCAALL.136  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G43320.2); Has 352 Blast hits to 350 proteins in 142 species: Archae - 0; Bacteria - 2; Metazoa - 127; Fungi - 113; Plants - 54; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT4G14000.1p  transcript_id AT4G14000.1  protein_id AT4G14000.1p  transcript_id AT4G14000.1  
At4g14010	chr4:008093010	0.0	C/8093010-8093363	AT4G14010.1  CDS  gene_syn DL3045C, FCAALL.140, RALFL32, ralf-like 32  gene RALFL32  function Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  go_component apoplast|GO:0048046|12611624|ISS  go_process cell-cell signaling|GO:0007267|12611624|ISS  go_function signal transducer activity|GO:0004871|12611624|TAS  product RALFL32 (ralf-like 32); signal transducer  note ralf-like 32 (RALFL32); FUNCTIONS IN: signal transducer activity; INVOLVED IN: cell-cell signaling; LOCATED IN: apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALFL33 (ralf-like 33); signal transducer (TAIR:AT4G15800.1); Has 85 Blast hits to 85 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G14010.1p  transcript_id AT4G14010.1  protein_id AT4G14010.1p  transcript_id AT4G14010.1  
At4g14020	chr4:008095370	0.0	C/8095370-8095705	AT4G14020.1  CDS  gene_syn DL3050C, FCAALL.138  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product rapid alkalinization factor (RALF) family protein  note rapid alkalinization factor (RALF) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G14020.1p  transcript_id AT4G14020.1  protein_id AT4G14020.1p  transcript_id AT4G14020.1  
At4g14030	chr4:008100012	0.0	C/8100012-8100165,8099697-8099892,8099379-8099606,8099065-8099296,8098853-8098960,8098489-8098761,8098121-8098402	AT4G14030.1  CDS  gene_syn DL3055C, FCAALL.79, SBP1, selenium-binding protein 1  gene SBP1  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function selenium binding|GO:0008430||IEA  go_component cellular_component|GO:0005575||ND  go_function selenium binding|GO:0008430||ISS  product SBP1 (selenium-binding protein 1); selenium binding  note selenium-binding protein 1 (SBP1); FUNCTIONS IN: selenium binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), Selenium-binding protein (InterPro:IPR008826); BEST Arabidopsis thaliana protein match is: SBP2 (SELENIUM-BINDING PROTEIN 2); selenium binding (TAIR:AT4G14040.1); Has 766 Blast hits to 759 proteins in 154 species: Archae - 15; Bacteria - 128; Metazoa - 187; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 381 (source: NCBI BLink).  protein_id AT4G14030.1p  transcript_id AT4G14030.1  protein_id AT4G14030.1p  transcript_id AT4G14030.1  
At4g14040	chr4:008102684	0.0	C/8102684-8102828,8102151-8102346,8101611-8102070,8101415-8101522,8101060-8101332,8100691-8100972	AT4G14040.1  CDS  gene_syn DL3061C, EDA38, EMBRYO SAC DEVELOPMENT ARREST 38, FCAALL.29, SBP2, SELENIUM-BINDING PROTEIN 2  gene SBP2  go_function selenium binding|GO:0008430||IEA  go_component cellular_component|GO:0005575||ND  go_process polar nucleus fusion|GO:0010197|15634699|IMP  go_function selenium binding|GO:0008430||ISS  product SBP2 (SELENIUM-BINDING PROTEIN 2); selenium binding  note SELENIUM-BINDING PROTEIN 2 (SBP2); FUNCTIONS IN: selenium binding; INVOLVED IN: polar nucleus fusion; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), Selenium-binding protein (InterPro:IPR008826); BEST Arabidopsis thaliana protein match is: SBP1 (selenium-binding protein 1); selenium binding (TAIR:AT4G14030.1); Has 764 Blast hits to 757 proteins in 154 species: Archae - 15; Bacteria - 128; Metazoa - 187; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 379 (source: NCBI BLink).  protein_id AT4G14040.1p  transcript_id AT4G14040.1  protein_id AT4G14040.1p  transcript_id AT4G14040.1  
At4g14050	chr4:008103645	0.0	C/8103645-8105483	AT4G14050.1  CDS  gene_syn DL3066C, FCAALL.80  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G68930.1); Has 14167 Blast hits to 5123 proteins in 161 species: Archae - 0; Bacteria - 4; Metazoa - 101; Fungi - 36; Plants - 13729; Viruses - 0; Other Eukaryotes - 297 (source: NCBI BLink).  protein_id AT4G14050.1p  transcript_id AT4G14050.1  protein_id AT4G14050.1p  transcript_id AT4G14050.1  
At4g14060	chr4:008107405	0.0	W/8107405-8107591,8107890-8108158	AT4G14060.1  CDS  gene_syn DL3070W, FCAALL.193  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product major latex protein-related / MLP-related  note major latex protein-related / MLP-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon, root; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: MLP328 (MLP-LIKE PROTEIN 328); copper ion binding (TAIR:AT2G01520.1); Has 232 Blast hits to 211 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 232; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G14060.1p  transcript_id AT4G14060.1  protein_id AT4G14060.1p  transcript_id AT4G14060.1  
At4g14070	chr4:008117833	0.0	C/8117833-8118039,8117234-8117419,8116518-8116632,8115848-8115935,8115186-8115394,8114999-8115114,8114716-8114865,8114442-8114509,8114213-8114318,8113943-8114101,8113807-8113860,8113625-8113705,8113154-8113291,8112836-8112995,8112657-8112736,8112443-8112558,8112310-8112367,8112122-8112214	AT4G14070.1  CDS  gene_syn AAE15, DL3075C, FCAALL.81, acyl-activating enzyme 15  gene AAE15  function Plastidic acyl activating enzyme involved in the elongation of exogenous medium-chain fatty acids to 16- and 18-carbon fatty acids.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component plastid|GO:0009536|16262711|IDA  go_process fatty acid elongation|GO:0030497|16262711|IDA  go_function long-chain-fatty-acid-[acyl-carrier-protein] ligase activity|GO:0008922|16262711|IMP  product AAE15 (acyl-activating enzyme 15); long-chain-fatty-acid-[acyl-carrier-protein] ligase  note acyl-activating enzyme 15 (AAE15); FUNCTIONS IN: long-chain-fatty-acid-[acyl-carrier-protein] ligase activity; INVOLVED IN: fatty acid elongation; LOCATED IN: chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-binding protein, putative (TAIR:AT3G23790.1); Has 46828 Blast hits to 36130 proteins in 2042 species: Archae - 577; Bacteria - 27857; Metazoa - 2433; Fungi - 1903; Plants - 1562; Viruses - 2; Other Eukaryotes - 12494 (source: NCBI BLink).  protein_id AT4G14070.1p  transcript_id AT4G14070.1  protein_id AT4G14070.1p  transcript_id AT4G14070.1  
At4g14080	chr4:008120247	0.0	C/8120247-8120292,8118812-8120164,8118697-8118734	AT4G14080.1  CDS  gene_syn DL3080C, FCAALL.82, MEE48, maternal effect embryo arrest 48  gene MEE48  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process pollen exine formation|GO:0010584||IMP  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product MEE48 (maternal effect embryo arrest 48); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note maternal effect embryo arrest 48 (MEE48); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: embryonic development ending in seed dormancy, pollen exine formation; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT3G23770.1); Has 1735 Blast hits to 1681 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1732; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G14080.1p  transcript_id AT4G14080.1  protein_id AT4G14080.1p  transcript_id AT4G14080.1  
At4g14100	chr4:008120749	0.0	W/8120749-8121054,8121887-8122043,8122131-8122288	AT4G14100.1  CDS  gene_syn DL3085W, FCAALL.191  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product transferase, transferring glycosyl groups  note transferase, transferring glycosyl groups; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23760.1); Has 63 Blast hits to 60 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G14100.1p  transcript_id AT4G14100.1  protein_id AT4G14100.1p  transcript_id AT4G14100.1  
At4g14090	chr4:008122434	0.0	C/8122434-8123804	AT4G14090.1  CDS  gene_syn DL3090C, FCAALL.84  function The At4g14090 encodes a anthocyanidin 5-O-glucosyltransferase specifically glucosylating the 5-position of the flavonoid A-ring.  go_component mitochondrion|GO:0005739||IEA  go_process metabolic process|GO:0008152||IEA  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function UDP-glucosyltransferase activity|GO:0035251|15807784|IDA  go_function anthocyanin 5-O-glucosyltransferase activity|GO:0080018|18757557|IMP  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, anthocyanin 5-O-glucosyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE); UDP-glycosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT4G15550.1); Has 4767 Blast hits to 4740 proteins in 312 species: Archae - 0; Bacteria - 160; Metazoa - 1838; Fungi - 19; Plants - 2678; Viruses - 43; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT4G14090.1p  transcript_id AT4G14090.1  protein_id AT4G14090.1p  transcript_id AT4G14090.1  
At4g14096	chr4:008124606	0.0	W/8124606-8125508,8125620-8125760,8125840-8126202	AT4G14096.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G14103.1); Has 1300 Blast hits to 1271 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1300; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G14096.1p  transcript_id AT4G14096.1  protein_id AT4G14096.1p  transcript_id AT4G14096.1  
At4g14103	chr4:008126948	0.0	W/8126948-8127871,8128005-8128145,8128225-8128305	AT4G14103.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14096.1); Has 1440 Blast hits to 1403 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1438; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G14103.1p  transcript_id AT4G14103.1  protein_id AT4G14103.1p  transcript_id AT4G14103.1  
At4g14104	chr4:008128880	0.0	C/8128880-8129314	AT4G14104.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 10 Blast hits to 10 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 8; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G14104.1p  transcript_id AT4G14104.1  protein_id AT4G14104.1p  transcript_id AT4G14104.1  
At4g14105	chr4:008129476	0.0	C/8129476-8129676	AT4G14105.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G14105.1p  transcript_id AT4G14105.1  protein_id AT4G14105.1p  transcript_id AT4G14105.1  
At4g14110	chr4:008134784	0.0	C/8134784-8134867,8134596-8134675,8134040-8134221,8133424-8133531,8133049-8133188	AT4G14110.1  CDS  gene_syn CONSTITUTIVE PHOTOMORPHOGENIC 9, COP9, COP9 SIGNALOSOME SUBUNIT 8, CSN8, DL3095C, EMB143, EMBRYO DEFECTIVE 143, FCAALL.131, FUS7, FUSCA 7, FUSCA PROTEIN FUS7  gene COP9  function Represses photomorphogenesis and induces skotomorphogenesis in the dark. A component of the COP9 signalosome complex.  go_component nucleus|GO:0005634|8689678|IDA  go_component signalosome|GO:0008180|11019806|TAS  go_component signalosome|GO:0008180|8689678|IPI  go_process protein deneddylation|GO:0000338|14570571|TAS  go_process response to light stimulus|GO:0009416|1467650|IMP  go_process photomorphogenesis|GO:0009640|11019806|TAS  go_process response to jasmonic acid stimulus|GO:0009753||IMP  go_process signalosome assembly|GO:0010387|17307927|IMP  go_process cullin deneddylation|GO:0010388|17307927|IMP  go_function metalloendopeptidase activity|GO:0004222|14570571|TAS  go_function protein binding|GO:0005515|16844902|IPI  product COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9); metalloendopeptidase/ protein binding  note CONSTITUTIVE PHOTOMORPHOGENIC 9 (COP9); FUNCTIONS IN: protein binding, metalloendopeptidase activity; INVOLVED IN: in 6 processes; LOCATED IN: signalosome, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 155 Blast hits to 155 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 5; Plants - 29; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G14110.1p  transcript_id AT4G14110.1  protein_id AT4G14110.1p  transcript_id AT4G14110.1  
At4g14120	chr4:008135185	0.0	W/8135185-8135551,8135690-8135898,8135999-8136247,8136337-8136430,8136625-8136812	AT4G14120.1  CDS  gene_syn DL3100W, FCAALL.110  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23740.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G14120.1p  transcript_id AT4G14120.1  protein_id AT4G14120.1p  transcript_id AT4G14120.1  
At4g14130	chr4:008137921	0.0	C/8137921-8138196,8137639-8137832,8137161-8137560	AT4G14130.1  CDS  gene_syn DL3105C, FCAALL.173, XTR7, XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7  gene XTR7  function xyloglucan endotransglycosylase-related protein (XTR7)  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process cellular glucan metabolic process|GO:0006073||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762||IEA  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7); hydrolase, acting on glycosyl bonds / hydrolase, hydrolyzing O-glycosyl compounds / xyloglucan:xyloglucosyl transferase  note XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7 (XTR7); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: N-terminal protein myristoylation, carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, apoplast, cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative (TAIR:AT3G23730.1); Has 1386 Blast hits to 1378 proteins in 218 species: Archae - 2; Bacteria - 190; Metazoa - 0; Fungi - 273; Plants - 811; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT4G14130.1p  transcript_id AT4G14130.1  protein_id AT4G14130.1p  transcript_id AT4G14130.1  
At4g14135	chr4:008142812	0.0	W/8142812-8143073	AT4G14135.1  pseudogenic_transcript  pseudo  function Pseudogene of AT3G29785  
At4g14140	chr4:008146345	0.0	W/8146345-8147747,8148099-8149623,8149735-8149899,8150005-8150203,8150293-8150404,8150470-8150617,8150696-8150893,8151004-8151282,8151373-8151534,8151619-8151837,8151982-8152131	AT4G14140.1  CDS  gene_syn DL3110W, DMT02, DMT2, DNA METHYLTRANSFERASE 02, DNA METHYLTRANSFERASE 2, FCAALL.111, MET02, MET2  gene DMT2  function This gene is predicted to encode a DNA methyltransferase. A plant line expressing an RNAi construct directed against DMT2 has reduced agrobacterium-mediated tumor formation.  go_component nucleus|GO:0005634||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA (cytosine-5-)-methyltransferase activity|GO:0003886||IEA  go_function protein binding|GO:0005515||IEA  go_process DNA methylation|GO:0006306||ISS  go_process DNA mediated transformation|GO:0009294|17827277|IMP  go_function DNA (cytosine-5-)-methyltransferase activity|GO:0003886||ISS  product DMT2 (DNA METHYLTRANSFERASE 2); DNA (cytosine-5-)-methyltransferase/ DNA binding / protein binding  note DNA METHYLTRANSFERASE 2 (DMT2); FUNCTIONS IN: protein binding, DNA binding, DNA (cytosine-5-)-methyltransferase activity; INVOLVED IN: DNA mediated transformation, DNA methylation; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA (cytosine-5)-methyltransferase 1 (InterPro:IPR017198), C-5 cytosine-specific DNA methylase (InterPro:IPR001525), Bromo adjacent region (InterPro:IPR001025), C-5 cytosine-specific DNA methylase, active site (InterPro:IPR018117); BEST Arabidopsis thaliana protein match is: DNA (cytosine-5-)-methyltransferase, putative (TAIR:AT4G08990.1); Has 4404 Blast hits to 3835 proteins in 822 species: Archae - 135; Bacteria - 2245; Metazoa - 314; Fungi - 150; Plants - 213; Viruses - 76; Other Eukaryotes - 1271 (source: NCBI BLink).  protein_id AT4G14140.1p  transcript_id AT4G14140.1  protein_id AT4G14140.1p  transcript_id AT4G14140.1  
At4g14145	chr4:008152892	0.0	C/8152892-8153091,8152660-8152786,8152499-8152576	AT4G14145.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 16 Blast hits to 16 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G14145.1p  transcript_id AT4G14145.1  protein_id AT4G14145.1p  transcript_id AT4G14145.1  
At4g14147	chr4:008156244	0.0	C/8156244-8156246,8156006-8156071,8155620-8155672,8155483-8155510,8155310-8155384,8154989-8155093,8154502-8154591,8154079-8154168	AT4G14147.1  CDS  gene_syn ARPC4  gene ARPC4  function actin-related protein 2/3 complex 34kDa subunit family / arp2/3 complex 34kDa subunit family  go_component Arp2/3 protein complex|GO:0005885|15653407|TAS  go_process actin filament organization|GO:0007015|10572033|TAS  go_function protein binding|GO:0005515|15086808|IPI  product ARPC4; protein binding  note ARPC4; FUNCTIONS IN: protein binding; INVOLVED IN: actin filament organization; LOCATED IN: Arp2/3 protein complex; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: ARP23 complex 20 kDa subunit (InterPro:IPR008384); Has 316 Blast hits to 316 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 89; Plants - 26; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT4G14147.1p  transcript_id AT4G14147.1  protein_id AT4G14147.1p  transcript_id AT4G14147.1  
At4g14149	chr4:008157975	0.0	C/8157975-8158349	AT4G14149.1  pseudogenic_transcript  pseudo  function Pseudogene of AT2G24480; zinc finger (C3HC4-type RING finger) family protein  
At4g14150	chr4:008164730	0.0	C/8164730-8165008,8164299-8164433,8164123-8164206,8163893-8164018,8163737-8163796,8163588-8163641,8163412-8163504,8162902-8162997,8162618-8162763,8161838-8161987,8161627-8161756,8160355-8161551,8160143-8160241,8159906-8160058,8159045-8159833,8158645-8158932	AT4G14150.1  CDS  gene_syn DL3115C, FCAALL.159, KINESIN-12A, PAKRP1, PHRAGMOPLAST-ASSOCIATED KINESIN-RELATED PROTEIN 1  gene PAKRP1  function Microtubule motor kinesin PAKRP1/Kinesin-12A. Together with PAKRP1L/Kinesin-12B, serve as linkers of the plus ends of antiparallel microtubules in the phragmoplast.  go_component phragmoplast|GO:0009524|15258761|IDA  go_process phragmoplast formation|GO:0000914|17720869|IGI  go_process microgametogenesis|GO:0055046|17720869|IMP  go_function microtubule motor activity|GO:0003777||ISS  go_function plus-end-directed microtubule motor activity|GO:0008574|17720869|IGI  product PAKRP1 (PHRAGMOPLAST-ASSOCIATED KINESIN-RELATED PROTEIN 1); microtubule motor/ plus-end-directed microtubule motor  note PHRAGMOPLAST-ASSOCIATED KINESIN-RELATED PROTEIN 1 (PAKRP1); FUNCTIONS IN: plus-end-directed microtubule motor activity, microtubule motor activity; INVOLVED IN: phragmoplast formation, microgametogenesis; LOCATED IN: phragmoplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin-related (InterPro:IPR010544), Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: KINESIN-12B; microtubule motor/ plus-end-directed microtubule motor (TAIR:AT3G23670.1); Has 22320 Blast hits to 16565 proteins in 713 species: Archae - 136; Bacteria - 855; Metazoa - 13174; Fungi - 1756; Plants - 1320; Viruses - 45; Other Eukaryotes - 5034 (source: NCBI BLink).  protein_id AT4G14150.1p  transcript_id AT4G14150.1  protein_id AT4G14150.1p  transcript_id AT4G14150.1  
At4g14160	chr4:008167574	0.0	W/8167574-8168329,8168487-8168660,8168772-8168933,8169645-8169787,8169982-8170057,8170177-8170346,8170470-8170551,8171299-8171376,8171829-8171990,8172089-8172352,8172676-8172780,8172880-8173026	AT4G14160.2  CDS  gene_syn DL3120W, FCAALL.112  go_component COPII vesicle coat|GO:0030127||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process ER to Golgi vesicle-mediated transport|GO:0006888||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product transport protein, putative  note transport protein, putative; FUNCTIONS IN: protein binding, transporter activity, zinc ion binding; INVOLVED IN: intracellular protein transport, transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24 helical region (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24 trunk region (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin region (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: transport protein, putative (TAIR:AT3G23660.1); Has 1078 Blast hits to 1066 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 460; Fungi - 314; Plants - 141; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).  protein_id AT4G14160.2p  transcript_id AT4G14160.2  protein_id AT4G14160.2p  transcript_id AT4G14160.2  
At4g14160	chr4:008167574	0.0	W/8167574-8168329,8168487-8168660,8168772-8168933,8169645-8169787,8169982-8170057,8170177-8170346,8170470-8170551,8171299-8171376,8171829-8171990,8172207-8172266	AT4G14160.3  CDS  gene_syn DL3120W, FCAALL.112  go_component COPII vesicle coat|GO:0030127||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process ER to Golgi vesicle-mediated transport|GO:0006888||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product transport protein, putative  note transport protein, putative; FUNCTIONS IN: protein binding, transporter activity, zinc ion binding; INVOLVED IN: intracellular protein transport, transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24 helical region (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24 trunk region (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895); BEST Arabidopsis thaliana protein match is: transport protein, putative (TAIR:AT3G23660.1); Has 1059 Blast hits to 1050 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 451; Fungi - 313; Plants - 139; Viruses - 0; Other Eukaryotes - 156 (source: NCBI BLink).  protein_id AT4G14160.3p  transcript_id AT4G14160.3  protein_id AT4G14160.3p  transcript_id AT4G14160.3  
At4g14160	chr4:008167574	0.0	W/8167574-8168329,8168487-8168660,8168772-8168933,8169645-8169787,8169982-8170057,8170177-8170346,8170470-8170554,8171299-8171376,8171829-8171990,8172089-8172352,8172676-8172780,8172880-8173026	AT4G14160.1  CDS  gene_syn DL3120W, FCAALL.112  go_component COPII vesicle coat|GO:0030127||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process ER to Golgi vesicle-mediated transport|GO:0006888||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product transport protein, putative  note transport protein, putative; FUNCTIONS IN: protein binding, transporter activity, zinc ion binding; INVOLVED IN: intracellular protein transport, transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24 helical region (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24 trunk region (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin region (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: transport protein, putative (TAIR:AT3G23660.1); Has 1079 Blast hits to 1067 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 459; Fungi - 316; Plants - 141; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).  protein_id AT4G14160.1p  transcript_id AT4G14160.1  protein_id AT4G14160.1p  transcript_id AT4G14160.1  
At4g14165	chr4:008175548	0.0	C/8175548-8175715,8175431-8175469,8175288-8175356,8174881-8175189,8174598-8174819	AT4G14165.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G22170.1); Has 82 Blast hits to 77 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G14165.1p  transcript_id AT4G14165.1  protein_id AT4G14165.1p  transcript_id AT4G14165.1  
At4g14170	chr4:008176709	0.0	C/8176709-8178085	AT4G14170.1  CDS  gene_syn DL3125C, FCAALL.113  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22410.1); Has 11175 Blast hits to 4510 proteins in 94 species: Archae - 0; Bacteria - 2; Metazoa - 21; Fungi - 13; Plants - 10955; Viruses - 0; Other Eukaryotes - 184 (source: NCBI BLink).  protein_id AT4G14170.1p  transcript_id AT4G14170.1  protein_id AT4G14170.1p  transcript_id AT4G14170.1  
At4g14180	chr4:008178330	0.0	W/8178330-8178800,8178918-8179027,8179114-8179289,8179632-8179946,8180350-8181259,8181466-8182051,8182129-8182409,8182480-8183146,8183225-8183515	AT4G14180.1  CDS  gene_syn Arabidopsis thaliana Putative Recombination initiation Defect 1, AtPRD1, DL3130W, FCAALL.114  gene AtPRD1  function Encodes a protein that is involved in meiotic recombination and is required for meiotic double strand break repair.  go_component chloroplast|GO:0009507|18431481|IDA  go_process meiotic DNA double-strand break formation|GO:0042138|17762870|IGI  go_process meiotic DNA double-strand break formation|GO:0042138|17762870|IMP  go_function protein binding|GO:0005515|17762870|IPI  go_function protein homodimerization activity|GO:0042803|17762870|IPI  product AtPRD1 (Arabidopsis thaliana Putative Recombination initiation Defect 1); protein binding / protein homodimerization  note Arabidopsis thaliana Putative Recombination initiation Defect 1 (AtPRD1); FUNCTIONS IN: protein binding, protein homodimerization activity; INVOLVED IN: meiotic DNA double-strand break formation; LOCATED IN: chloroplast; EXPRESSED IN: floral bud; Has 40 Blast hits to 39 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G14180.1p  transcript_id AT4G14180.1  protein_id AT4G14180.1p  transcript_id AT4G14180.1  
At4g14190	chr4:008184833	0.0	C/8184833-8185180,8183594-8184751	AT4G14190.1  CDS  gene_syn DL3135C, FCAALL.115  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G42630.1); Has 7409 Blast hits to 2639 proteins in 94 species: Archae - 1; Bacteria - 0; Metazoa - 60; Fungi - 16; Plants - 7130; Viruses - 0; Other Eukaryotes - 202 (source: NCBI BLink).  protein_id AT4G14190.1p  transcript_id AT4G14190.1  protein_id AT4G14190.1p  transcript_id AT4G14190.1  
At4g14200	chr4:008188634	0.0	C/8188634-8188667,8188063-8188263,8187800-8187976,8186006-8187583,8185524-8185888	AT4G14200.1  CDS  gene_syn DL3140C, FCAALL.116  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; Has 1311 Blast hits to 831 proteins in 209 species: Archae - 4; Bacteria - 342; Metazoa - 470; Fungi - 179; Plants - 56; Viruses - 0; Other Eukaryotes - 260 (source: NCBI BLink).  protein_id AT4G14200.1p  transcript_id AT4G14200.1  protein_id AT4G14200.1p  transcript_id AT4G14200.1  
At4g14210	chr4:008194602	0.0	C/8194602-8194769,8194381-8194513,8194197-8194285,8193697-8193754,8193364-8193519,8192647-8192799,8192303-8192418,8191801-8192014,8191616-8191718,8191473-8191520,8191252-8191297,8190913-8191100,8190657-8190819,8190426-8190491	AT4G14210.2  CDS  gene_syn DL3145C, FCAALL.28, PDE226, PDS, PDS3, PHYTOENE DESATURASE, PHYTOENE DESATURASE 3, PIGMENT DEFECTIVE 226  gene PDS3  function Encodes phytoene desaturase (phytoene dehydrogenase), an enzyme that catalyzes the desaturation of phytoene to zeta-carotene during carotenoid biosynthesis. Processed protein is localized to the plastid.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|9700076|TAS  go_process carotenoid biosynthetic process|GO:0016117|9914519|IDA  go_process carotene biosynthetic process|GO:0016120|9914519|IDA  go_function phytoene dehydrogenase activity|GO:0016166|9914519|IDA  product PDS3 (PHYTOENE DESATURASE 3); phytoene dehydrogenase  note PHYTOENE DESATURASE 3 (PDS3); FUNCTIONS IN: phytoene dehydrogenase activity; INVOLVED IN: carotenoid biosynthetic process, carotene biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), Phytoene desaturase (InterPro:IPR014102); BEST Arabidopsis thaliana protein match is: ZDS (ZETA-CAROTENE DESATURASE); carotene 7,8-desaturase (TAIR:AT3G04870.2); Has 3075 Blast hits to 3073 proteins in 579 species: Archae - 40; Bacteria - 1376; Metazoa - 330; Fungi - 65; Plants - 312; Viruses - 0; Other Eukaryotes - 952 (source: NCBI BLink).  protein_id AT4G14210.2p  transcript_id AT4G14210.2  protein_id AT4G14210.2p  transcript_id AT4G14210.2  
At4g14210	chr4:008194602	0.0	C/8194602-8194769,8194381-8194513,8194197-8194285,8193697-8193754,8193364-8193519,8192651-8192799,8192303-8192422,8191801-8192014,8191616-8191718,8191473-8191520,8191252-8191297,8190913-8191100,8190657-8190819,8190426-8190491	AT4G14210.1  CDS  gene_syn DL3145C, FCAALL.28, PDE226, PDS, PDS3, PHYTOENE DESATURASE, PHYTOENE DESATURASE 3, PIGMENT DEFECTIVE 226  gene PDS3  function Encodes phytoene desaturase (phytoene dehydrogenase), an enzyme that catalyzes the desaturation of phytoene to zeta-carotene during carotenoid biosynthesis. Processed protein is localized to the plastid.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast|GO:0009507|9700076|TAS  go_process carotenoid biosynthetic process|GO:0016117|9914519|IDA  go_process carotene biosynthetic process|GO:0016120|9914519|IDA  go_function phytoene dehydrogenase activity|GO:0016166|9914519|IDA  product PDS3 (PHYTOENE DESATURASE 3); phytoene dehydrogenase  note PHYTOENE DESATURASE 3 (PDS3); FUNCTIONS IN: phytoene dehydrogenase activity; INVOLVED IN: carotenoid biosynthetic process, carotene biosynthetic process; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), Phytoene desaturase (InterPro:IPR014102); BEST Arabidopsis thaliana protein match is: ZDS (ZETA-CAROTENE DESATURASE); carotene 7,8-desaturase (TAIR:AT3G04870.2); Has 3066 Blast hits to 3066 proteins in 581 species: Archae - 40; Bacteria - 1369; Metazoa - 328; Fungi - 67; Plants - 314; Viruses - 0; Other Eukaryotes - 948 (source: NCBI BLink).  protein_id AT4G14210.1p  transcript_id AT4G14210.1  protein_id AT4G14210.1p  transcript_id AT4G14210.1  
At4g14220	chr4:008196012	0.0	W/8196012-8196191,8196500-8196546,8196656-8196718,8196819-8196930,8197009-8197298,8197637-8197744,8197824-8198121,8198223-8198240	AT4G14220.1  CDS  gene_syn DL3150W, FCAALL.146, RHF1A, RING-H2 GROUP F1A  gene RHF1A  function encodes a RING-type E3 ubiquitin ligase implicated in gametogenesis. RHF1a can interact with the cell cycle inhibitor ICK4/KRP6 in vitro. It apppears to target ICK4KRP6 for degradation following meiosis in order to allow the mitoses associated with megagametogenesis and microgametogenesis to occur. RHF1a is expressed in the carpels throughout floral development. It is expressed in various tissues of the anthers during the early stages of anther development but not in stage 12 flowers and beyond.  go_component membrane|GO:0016020|17432890|IDA  go_process megagametogenesis|GO:0009561|18552199|IGI  go_process proteasomal protein catabolic process|GO:0010498|18552199|IDA  go_process regulation of cell cycle|GO:0051726|18552199|IGI  go_process microgametogenesis|GO:0055046|18552199|IGI  go_function ubiquitin-protein ligase activity|GO:0004842|15644464|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product RHF1A (RING-H2 GROUP F1A); protein binding / ubiquitin-protein ligase/ zinc ion binding  note RING-H2 GROUP F1A (RHF1A); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: regulation of cell cycle, proteasomal protein catabolic process, megagametogenesis, microgametogenesis; LOCATED IN: membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: RHF2A (RING-H2 GROUP F2A); protein binding / zinc ion binding (TAIR:AT5G22000.3); Has 3845 Blast hits to 3583 proteins in 191 species: Archae - 0; Bacteria - 12; Metazoa - 1561; Fungi - 224; Plants - 1140; Viruses - 6; Other Eukaryotes - 902 (source: NCBI BLink).  protein_id AT4G14220.1p  transcript_id AT4G14220.1  protein_id AT4G14220.1p  transcript_id AT4G14220.1  
At4g14225	chr4:008198777	0.0	W/8198777-8198978,8199027-8199202	AT4G14225.1  CDS  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product zinc finger (AN1-like) family protein  note zinc finger (AN1-like) family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: zinc finger (AN1-like) family protein (TAIR:AT1G12440.2); Has 688 Blast hits to 669 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 332; Fungi - 2; Plants - 274; Viruses - 6; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT4G14225.1p  transcript_id AT4G14225.1  protein_id AT4G14225.1p  transcript_id AT4G14225.1  
At4g14226	chr4:008199425	0.0	C/8199425-8199592	AT4G14226.1  CDS  product unknown protein  note unknown protein; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G14226.1p  transcript_id AT4G14226.1  protein_id AT4G14226.1p  transcript_id AT4G14226.1  
At4g14230	chr4:008202887	0.0	C/8202887-8203130,8202656-8202732,8202477-8202560,8202061-8202398,8201774-8201861,8201607-8201680,8201020-8201509,8200850-8200942	AT4G14230.1  CDS  gene_syn DL3155C, FCAALL.147  go_component mitochondrion|GO:0005739|15276431|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product CBS domain-containing protein-related  note CBS domain-containing protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14240.1); Has 6669 Blast hits to 6527 proteins in 1353 species: Archae - 64; Bacteria - 4331; Metazoa - 264; Fungi - 186; Plants - 121; Viruses - 0; Other Eukaryotes - 1703 (source: NCBI BLink).  protein_id AT4G14230.1p  transcript_id AT4G14230.1  protein_id AT4G14230.1p  transcript_id AT4G14230.1  
At4g14240	chr4:008207027	0.0	C/8207027-8207273,8206865-8206941,8206687-8206770,8206465-8206578,8206270-8206353,8206082-8206153,8205917-8205984,8205686-8205773,8205523-8205596,8205042-8205437,8204887-8204968,8204712-8204810	AT4G14240.1  CDS  gene_syn DL3160C, FCAALL.149  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein-related (TAIR:AT4G14230.1); Has 6770 Blast hits to 6657 proteins in 1347 species: Archae - 62; Bacteria - 4461; Metazoa - 254; Fungi - 179; Plants - 121; Viruses - 0; Other Eukaryotes - 1693 (source: NCBI BLink).  protein_id AT4G14240.1p  transcript_id AT4G14240.1  protein_id AT4G14240.1p  transcript_id AT4G14240.1  
At4g14240	chr4:008207054	0.0	C/8207054-8207273,8206865-8206941,8206687-8206770,8206465-8206578,8206270-8206353,8206082-8206153,8205917-8205984,8205686-8205773,8205523-8205596,8205042-8205437,8204887-8204968,8204712-8204810	AT4G14240.2  CDS  gene_syn DL3160C, FCAALL.149  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein-related (TAIR:AT4G14230.1); Has 6735 Blast hits to 6622 proteins in 1349 species: Archae - 62; Bacteria - 4446; Metazoa - 254; Fungi - 179; Plants - 121; Viruses - 0; Other Eukaryotes - 1673 (source: NCBI BLink).  protein_id AT4G14240.2p  transcript_id AT4G14240.2  protein_id AT4G14240.2p  transcript_id AT4G14240.2  
At4g14250	chr4:008212821	0.0	C/8212821-8213237,8211988-8212712,8211405-8211575,8208985-8209846	AT4G14250.1  CDS  gene_syn DL3165C, FCAALL.151  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  product structural constituent of ribosome  note structural constituent of ribosome; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; CONTAINS InterPro DOMAIN/s: UAS (InterPro:IPR006577), Translation protein SH3-like (InterPro:IPR008991), UBX (InterPro:IPR001012), Ribosomal protein L2 (InterPro:IPR002171), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: UBX domain-containing protein (TAIR:AT1G59550.1); Has 982 Blast hits to 838 proteins in 270 species: Archae - 20; Bacteria - 25; Metazoa - 384; Fungi - 205; Plants - 170; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink).  protein_id AT4G14250.1p  transcript_id AT4G14250.1  protein_id AT4G14250.1p  transcript_id AT4G14250.1  
At4g14251	chr4:008213701	0.0	C/8213701-8213883	AT4G14251.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G14251.1p  transcript_id AT4G14251.1  protein_id AT4G14251.1p  transcript_id AT4G14251.1  
At4g14260	chr4:008216772	0.0	C/8216772-8217571,8216321-8216660	AT4G14260.1  CDS  gene_syn DL3170C, FCAALL.152  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25920.1); Has 126 Blast hits to 124 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 126; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G14260.1p  transcript_id AT4G14260.1  protein_id AT4G14260.1p  transcript_id AT4G14260.1  
At4g14270	chr4:008218517	0.0	W/8218517-8218778,8218868-8219037	AT4G14270.1  CDS  gene_syn DL3175W, FCAALL.153  function Protein containing PAM2 motif which mediates interaction with the PABC domain of polyadenyl binding proteins.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: ERD15 (EARLY RESPONSIVE TO DEHYDRATION 15); protein binding (TAIR:AT2G41430.4); Has 126 Blast hits to 126 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT4G14270.1p  transcript_id AT4G14270.1  protein_id AT4G14270.1p  transcript_id AT4G14270.1  
At4g14270	chr4:008218517	0.0	W/8218517-8218778,8218874-8219037	AT4G14270.2  CDS  gene_syn DL3175W, FCAALL.153  function Protein containing PAM2 motif which mediates interaction with the PABC domain of polyadenyl binding proteins.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: ERD15 (EARLY RESPONSIVE TO DEHYDRATION 15); protein binding (TAIR:AT2G41430.4); Has 126 Blast hits to 126 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT4G14270.2p  transcript_id AT4G14270.2  protein_id AT4G14270.2p  transcript_id AT4G14270.2  
At4g14272	chr4:008219622	0.0	W/8219622-8219678,8219801-8220026	AT4G14272.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52605.1); Has 7 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G14272.1p  transcript_id AT4G14272.1  protein_id AT4G14272.1p  transcript_id AT4G14272.1  
At4g14276	chr4:008220816	0.0	W/8220816-8220873,8220967-8221193	AT4G14276.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52605.1); Has 13 Blast hits to 11 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G14276.1p  transcript_id AT4G14276.1  protein_id AT4G14276.1p  transcript_id AT4G14276.1  
At4g14280	chr4:008222518	0.0	W/8222518-8222691,8222776-8224575,8224652-8225074	AT4G14280.1  CDS  gene_syn DL3180W, FCAALL.154  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT5G18980.1); Has 282 Blast hits to 212 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 282; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G14280.1p  transcript_id AT4G14280.1  protein_id AT4G14280.1p  transcript_id AT4G14280.1  
At4g14290	chr4:008230020	0.0	C/8230020-8230057,8229627-8229708,8229310-8229413,8228956-8229082,8228438-8228532,8227964-8228087,8227771-8227851,8227416-8227514,8227158-8227313,8227015-8227069,8226866-8226936,8226481-8226525,8226061-8226237,8225547-8225969	AT4G14290.1  CDS  gene_syn DL3185C, FCAALL.155  go_component plasma membrane|GO:0005886|17317660|IDA  product unknown protein  note LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23540.1); Has 2977 Blast hits to 1894 proteins in 536 species: Archae - 16; Bacteria - 950; Metazoa - 424; Fungi - 111; Plants - 88; Viruses - 19; Other Eukaryotes - 1369 (source: NCBI BLink).  protein_id AT4G14290.1p  transcript_id AT4G14290.1  protein_id AT4G14290.1p  transcript_id AT4G14290.1  
At4g14300	chr4:008231179	0.0	W/8231179-8231400,8231772-8232785	AT4G14300.1  CDS  gene_syn DL3190W, FCAALL.156  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative  note heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative (TAIR:AT2G33410.1); Has 82956 Blast hits to 37358 proteins in 1472 species: Archae - 56; Bacteria - 18252; Metazoa - 33610; Fungi - 7047; Plants - 9752; Viruses - 546; Other Eukaryotes - 13693 (source: NCBI BLink).  protein_id AT4G14300.1p  transcript_id AT4G14300.1  protein_id AT4G14300.1p  transcript_id AT4G14300.1  
At4g14301	chr4:008234077	0.0	C/8234077-8234227,8233764-8234011	AT4G14301.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system.  protein_id AT4G14301.1p  transcript_id AT4G14301.1  protein_id AT4G14301.1p  transcript_id AT4G14301.1  
At4g14305	chr4:008236534	0.0	C/8236534-8236582,8236356-8236441,8236171-8236272,8235809-8235884,8235635-8235705,8235466-8235551,8235335-8235386	AT4G14305.2  CDS  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Mpv17/PMP22 (InterPro:IPR007248); BEST Arabidopsis thaliana protein match is: PMP22 (TAIR:AT4G04470.1); Has 818 Blast hits to 818 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 406; Fungi - 215; Plants - 157; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT4G14305.2p  transcript_id AT4G14305.2  protein_id AT4G14305.2p  transcript_id AT4G14305.2  
At4g14305	chr4:008236534	0.0	C/8236534-8236605,8236356-8236454,8236171-8236272,8235809-8235884,8235635-8235705,8235466-8235551,8235335-8235386	AT4G14305.1  CDS  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Mpv17/PMP22 (InterPro:IPR007248); BEST Arabidopsis thaliana protein match is: PMP22 (TAIR:AT4G04470.1); Has 957 Blast hits to 957 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 456; Fungi - 286; Plants - 164; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT4G14305.1p  transcript_id AT4G14305.1  protein_id AT4G14305.1p  transcript_id AT4G14305.1  
At4g14310	chr4:008238804	0.0	C/8238804-8240324,8237824-8238440,8237137-8237680	AT4G14310.1  CDS  gene_syn DL3195C, FCAALL.177  go_component cell wall|GO:0005618|15593128|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046); Has 1586 Blast hits to 1332 proteins in 204 species: Archae - 6; Bacteria - 138; Metazoa - 590; Fungi - 104; Plants - 66; Viruses - 5; Other Eukaryotes - 677 (source: NCBI BLink).  protein_id AT4G14310.1p  transcript_id AT4G14310.1  protein_id AT4G14310.1p  transcript_id AT4G14310.1  
At4g14310	chr4:008238804	0.0	C/8238804-8240324,8238488-8238568,8237824-8238440,8237137-8237680	AT4G14310.2  CDS  gene_syn DL3195C, FCAALL.177  go_component cell wall|GO:0005618|15593128|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046); Has 1571 Blast hits to 1320 proteins in 206 species: Archae - 6; Bacteria - 142; Metazoa - 581; Fungi - 102; Plants - 66; Viruses - 5; Other Eukaryotes - 669 (source: NCBI BLink).  protein_id AT4G14310.2p  transcript_id AT4G14310.2  protein_id AT4G14310.2p  transcript_id AT4G14310.2  
At4g14315	chr4:008240994	0.0	W/8240994-8241173	AT4G14315.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G14315.1p  transcript_id AT4G14315.1  protein_id AT4G14315.1p  transcript_id AT4G14315.1  
At4g14320	chr4:008243803	0.0	C/8243803-8243805,8243052-8243231,8242828-8242902,8242684-8242743	AT4G14320.1  CDS  gene_syn FCAALL.124  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L36a/L44 (RPL36aB)  note 60S ribosomal protein L36a/L44 (RPL36aB); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, ribosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L44e (InterPro:IPR000552), Ribosomal protein, zinc-binding (InterPro:IPR011332); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L36a/L44 (RPL36aA) (TAIR:AT3G23390.1); Has 750 Blast hits to 748 proteins in 259 species: Archae - 104; Bacteria - 1; Metazoa - 299; Fungi - 120; Plants - 71; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink).  protein_id AT4G14320.1p  transcript_id AT4G14320.1  protein_id AT4G14320.1p  transcript_id AT4G14320.1  
At4g14330	chr4:008244228	0.0	W/8244228-8244836,8244913-8245068,8245160-8245267,8245357-8245467,8245568-8246905,8246999-8247286	AT4G14330.1  CDS  gene_syn DL3205W, FCAALL.179  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_component phragmoplast|GO:0009524|11701879|IDA  go_function microtubule motor activity|GO:0003777||ISS  product phragmoplast-associated kinesin-related protein 2 (PAKRP2)  note phragmoplast-associated kinesin-related protein 2 (PAKRP2); FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: phragmoplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATK1 (ARABIDOPSIS THALIANA KINESIN 1); microtubule motor/ minus-end-directed microtubule motor (TAIR:AT4G21270.1); Has 19997 Blast hits to 14982 proteins in 632 species: Archae - 102; Bacteria - 784; Metazoa - 9932; Fungi - 1679; Plants - 1066; Viruses - 71; Other Eukaryotes - 6363 (source: NCBI BLink).  protein_id AT4G14330.1p  transcript_id AT4G14330.1  protein_id AT4G14330.1p  transcript_id AT4G14330.1  
At4g14340	chr4:008251575	0.0	C/8251575-8251668,8251434-8251474,8251098-8251167,8250859-8251007,8250687-8250782,8250488-8250558,8250215-8250276,8250045-8250108,8249869-8249953,8249657-8249783,8249450-8249523,8249288-8249351,8248887-8249023,8248532-8248771	AT4G14340.1  CDS  gene_syn CASEIN KINASE I, CASEIN KINASE I-LIKE 11, CKI1, CKL11, DL3210C, FCAALL.68  gene CKI1  function Phosphorylates serine or threonine residues that are near and C-terminal to acidic side chains on a variety of target proteins  go_component nucleus|GO:0005634|16126836|IDA  go_component cytoplasm|GO:0005737|16126836|IDA  go_process phosphorylation|GO:0016310||TAS  go_function protein serine/threonine kinase activity|GO:0004674|7480353|IDA  go_function kinase activity|GO:0016301||ISS  product CKI1 (CASEIN KINASE I); kinase/ protein serine/threonine kinase  note CASEIN KINASE I (CKI1); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity; INVOLVED IN: phosphorylation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ckl10 (Casein Kinase I-like 10); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT3G23340.1); Has 43614 Blast hits to 43337 proteins in 1347 species: Archae - 12; Bacteria - 5347; Metazoa - 18985; Fungi - 4181; Plants - 5619; Viruses - 299; Other Eukaryotes - 9171 (source: NCBI BLink).  protein_id AT4G14340.1p  transcript_id AT4G14340.1  protein_id AT4G14340.1p  transcript_id AT4G14340.1  
At4g14342	chr4:008255400	0.0	C/8255400-8255405,8255085-8255170,8254873-8254996,8253789-8253836	AT4G14342.1  CDS  go_component cellular_component|GO:0005575||ND  go_process nuclear mRNA splicing, via spliceosome|GO:0000398||ISS  go_function molecular_function|GO:0003674||ND  product pre-mRNA splicing factor 10 kDa subunit, putative  note pre-mRNA splicing factor 10 kDa subunit, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Splicing factor 3B subunit 5/RDS3 complex subunit 10 (InterPro:IPR009846), Splicing factor 3B, subunit 5 (InterPro:IPR017089); BEST Arabidopsis thaliana protein match is: splicing factor, putative (TAIR:AT3G23325.1); Has 220 Blast hits to 220 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 90; Fungi - 61; Plants - 31; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT4G14342.1p  transcript_id AT4G14342.1  protein_id AT4G14342.1p  transcript_id AT4G14342.1  
At4g14345	chr4:008255700	0.0	W/8255700-8255771	AT4G14345.1  tRNA  gene_syn 68169.TRNA-HIS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-His (anticodon: GTG)  transcript_id AT4G14345.1  
At4g14350	chr4:008259714	0.0	C/8259714-8259934,8259404-8259578,8259137-8259220,8258818-8259059,8258514-8258733,8258285-8258364,8258114-8258198,8257825-8257956,8257616-8257729,8257397-8257444,8256822-8256906,8256656-8256712,8256449-8256561	AT4G14350.1  CDS  gene_syn DL3215C, FCAALL.182  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component nucleus|GO:0005634|15469496|IDA  go_component cytoplasm|GO:0005737|15469496|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component phragmoplast|GO:0009524|15469496|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301|13678909|ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol, nucleus, plasma membrane, phragmoplast, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase, C-terminal (InterPro:IPR017892), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT3G23310.1); Has 80538 Blast hits to 79500 proteins in 2438 species: Archae - 61; Bacteria - 7527; Metazoa - 33574; Fungi - 7818; Plants - 15185; Viruses - 408; Other Eukaryotes - 15965 (source: NCBI BLink).  protein_id AT4G14350.1p  transcript_id AT4G14350.1  protein_id AT4G14350.1p  transcript_id AT4G14350.1  
At4g14350	chr4:008259714	0.0	C/8259714-8259934,8259404-8259578,8259137-8259220,8258818-8259059,8258514-8258733,8258285-8258364,8258114-8258198,8257825-8257956,8257616-8257729,8257397-8257444,8256822-8256906,8256656-8256712,8256449-8256561	AT4G14350.2  CDS  gene_syn DL3215C, FCAALL.182  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component nucleus|GO:0005634|15469496|IDA  go_component cytoplasm|GO:0005737|15469496|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component phragmoplast|GO:0009524|15469496|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301|13678909|ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol, nucleus, plasma membrane, phragmoplast, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase, C-terminal (InterPro:IPR017892), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT3G23310.1); Has 80538 Blast hits to 79500 proteins in 2438 species: Archae - 61; Bacteria - 7527; Metazoa - 33574; Fungi - 7818; Plants - 15185; Viruses - 408; Other Eukaryotes - 15965 (source: NCBI BLink).  protein_id AT4G14350.2p  transcript_id AT4G14350.2  protein_id AT4G14350.2p  transcript_id AT4G14350.2  
At4g14350	chr4:008259714	0.0	C/8259714-8259934,8259404-8259578,8259137-8259220,8258818-8259059,8258514-8258733,8258285-8258364,8258114-8258198,8257825-8257956,8257616-8257729,8257397-8257444,8256822-8256906,8256656-8256712,8256475-8256561,8256353-8256369	AT4G14350.3  CDS  gene_syn DL3215C, FCAALL.182  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component nucleus|GO:0005634|15469496|IDA  go_component cytoplasm|GO:0005737|15469496|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component phragmoplast|GO:0009524|15469496|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301|13678909|ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol, nucleus, plasma membrane, phragmoplast, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase, C-terminal (InterPro:IPR017892), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT3G23310.1); Has 80594 Blast hits to 79557 proteins in 2438 species: Archae - 61; Bacteria - 7539; Metazoa - 33601; Fungi - 7824; Plants - 15185; Viruses - 408; Other Eukaryotes - 15976 (source: NCBI BLink).  protein_id AT4G14350.3p  transcript_id AT4G14350.3  protein_id AT4G14350.3p  transcript_id AT4G14350.3  
At4g14358	chr4:008267496	0.0	W/8267496-8267759	AT4G14358.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ATNRT2.5 (nitrate transporter2.5); nitrate transmembrane transporter (TAIR:AT1G12940.1); Has 111 Blast hits to 111 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G14358.1p  transcript_id AT4G14358.1  protein_id AT4G14358.1p  transcript_id AT4G14358.1  
At4g14360	chr4:008269961	0.0	C/8269961-8270191,8269720-8269884,8269456-8269638,8268778-8269372,8268589-8268701,8268275-8268495,8267869-8268187	AT4G14360.1  CDS  gene_syn DL3220C, FCAALL.222  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component Golgi apparatus|GO:0005794|16618929|IDA  product dehydration-responsive protein-related  note dehydration-responsive protein-related; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive protein-related (TAIR:AT3G23300.1); Has 524 Blast hits to 508 proteins in 37 species: Archae - 0; Bacteria - 29; Metazoa - 0; Fungi - 0; Plants - 480; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT4G14360.1p  transcript_id AT4G14360.1  protein_id AT4G14360.1p  transcript_id AT4G14360.1  
At4g14360	chr4:008269961	0.0	C/8269961-8270191,8269720-8269884,8269456-8269638,8268778-8269372,8268589-8268701,8268275-8268495,8267869-8268187	AT4G14360.2  CDS  gene_syn DL3220C, FCAALL.222  go_component Golgi apparatus|GO:0005794|16618929|IDA  product dehydration-responsive protein-related  note dehydration-responsive protein-related; LOCATED IN: Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive protein-related (TAIR:AT3G23300.1); Has 524 Blast hits to 508 proteins in 37 species: Archae - 0; Bacteria - 29; Metazoa - 0; Fungi - 0; Plants - 480; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT4G14360.2p  transcript_id AT4G14360.2  protein_id AT4G14360.2p  transcript_id AT4G14360.2  
At4g14365	chr4:008273578	0.0	C/8273578-8273685,8273335-8273449,8273155-8273235,8272968-8273056,8272789-8272880,8272605-8272686,8272387-8272489,8272234-8272308,8272053-8272138,8271660-8271959	AT4G14365.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein  note zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein (TAIR:AT3G23280.1); Has 25331 Blast hits to 12607 proteins in 594 species: Archae - 31; Bacteria - 1429; Metazoa - 13411; Fungi - 969; Plants - 625; Viruses - 441; Other Eukaryotes - 8425 (source: NCBI BLink).  protein_id AT4G14365.1p  transcript_id AT4G14365.1  protein_id AT4G14365.1p  transcript_id AT4G14365.1  
At4g14368	chr4:008278801	0.0	C/8278801-8278810,8278677-8278729,8278054-8278140,8277854-8277943,8277676-8277762,8277493-8277597,8275370-8277403,8275147-8275293,8274689-8275056,8274539-8274618,8274313-8274491	AT4G14368.1  CDS  go_function zinc ion binding|GO:0008270||IEA  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Zinc finger, FYVE-type (InterPro:IPR000306), Zinc finger, FYVE-related (InterPro:IPR017455), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Pleckstrin homology-type (InterPro:IPR011993), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: regulator of chromosome condensation (RCC1) family protein (TAIR:AT3G23270.1).  protein_id AT4G14368.1p  transcript_id AT4G14368.1  protein_id AT4G14368.1p  transcript_id AT4G14368.1  
At4g14370	chr4:008282920	0.0	C/8282920-8283263,8281723-8282818,8281327-8281623,8279946-8281235	AT4G14370.1  CDS  gene_syn DL3225C, FCAALL.185  go_component intrinsic to membrane|GO:0031224||IEA  go_process defense response|GO:0006952||ISS  go_process signal transduction|GO:0007165|15358268|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product phosphoinositide binding  note phosphoinositide binding; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat 3 (InterPro:IPR011713), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT2G16870.1); Has 29829 Blast hits to 16420 proteins in 692 species: Archae - 56; Bacteria - 2443; Metazoa - 8792; Fungi - 770; Plants - 11893; Viruses - 63; Other Eukaryotes - 5812 (source: NCBI BLink).  protein_id AT4G14370.1p  transcript_id AT4G14370.1  protein_id AT4G14370.1p  transcript_id AT4G14370.1  
At4g14380	chr4:008285815	0.0	W/8285815-8286417	AT4G14380.1  CDS  gene_syn DL3230W, FCAALL.187  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, 4 leaf senescence stage, petal differentiation and expansion stage; Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G14380.1p  transcript_id AT4G14380.1  protein_id AT4G14380.1p  transcript_id AT4G14380.1  
At4g14385	chr4:008288518	0.0	C/8288518-8288622,8288312-8288412,8287965-8288148	AT4G14385.3  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H4 acetyltransferase, NuA4 complex, Eaf6 (InterPro:IPR015418); Has 244 Blast hits to 244 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 60; Plants - 29; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT4G14385.3p  transcript_id AT4G14385.3  protein_id AT4G14385.3p  transcript_id AT4G14385.3  
At4g14385	chr4:008288518	0.0	C/8288518-8288622,8288312-8288412,8288079-8288148,8287517-8287544,8287348-8287430,8287196-8287279	AT4G14385.2  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H4 acetyltransferase, NuA4 complex, Eaf6 (InterPro:IPR015418); Has 242 Blast hits to 242 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 58; Plants - 29; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT4G14385.2p  transcript_id AT4G14385.2  protein_id AT4G14385.2p  transcript_id AT4G14385.2  
At4g14385	chr4:008288518	0.0	C/8288518-8288622,8288312-8288412,8288079-8288148,8287517-8287544,8287379-8287430,8287144-8287279	AT4G14385.1  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H4 acetyltransferase, NuA4 complex, Eaf6 (InterPro:IPR015418); Has 245 Blast hits to 245 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 60; Plants - 29; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT4G14385.1p  transcript_id AT4G14385.1  protein_id AT4G14385.1p  transcript_id AT4G14385.1  
At4g14390	chr4:008289644	0.0	W/8289644-8289719,8289856-8290689,8290827-8291359,8291442-8292083	AT4G14390.1  CDS  gene_syn DL3235W, FCAALL.188  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ACD6 (ACCELERATED CELL DEATH 6); protein binding (TAIR:AT4G14400.1); Has 19257 Blast hits to 8870 proteins in 364 species: Archae - 25; Bacteria - 1079; Metazoa - 11723; Fungi - 1135; Plants - 1174; Viruses - 62; Other Eukaryotes - 4059 (source: NCBI BLink).  protein_id AT4G14390.1p  transcript_id AT4G14390.1  protein_id AT4G14390.1p  transcript_id AT4G14390.1  
At4g14400	chr4:008294668	0.0	W/8294668-8294743,8296213-8296962,8297091-8297623,8297707-8298360	AT4G14400.1  CDS  gene_syn ACCELERATED CELL DEATH 6, ACD6, DL3240W, FCAALL.190  gene ACD6  function encodes a novel protein with putative ankyrin and transmembrane regions. It is a member of one of the largest uncharacterized gene families in higher plants. The gene is involved in resistance to Pseudomonas syringae.  go_component membrane|GO:0016020|14507999|ISS  go_component membrane|GO:0016020|16297071|IDA  go_process cell death|GO:0008219|10488236|IMP  go_process response to salicylic acid stimulus|GO:0009751|10488236|IMP  go_process defense response to bacterium, incompatible interaction|GO:0009816|10488236|IMP  go_function protein binding|GO:0005515||ISS  product ACD6 (ACCELERATED CELL DEATH 6); protein binding  note ACCELERATED CELL DEATH 6 (ACD6); FUNCTIONS IN: protein binding; INVOLVED IN: defense response to bacterium, incompatible interaction, cell death, response to salicylic acid stimulus; LOCATED IN: membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT4G14390.1); Has 14594 Blast hits to 7475 proteins in 311 species: Archae - 20; Bacteria - 763; Metazoa - 8462; Fungi - 685; Plants - 1040; Viruses - 52; Other Eukaryotes - 3572 (source: NCBI BLink).  protein_id AT4G14400.1p  transcript_id AT4G14400.1  protein_id AT4G14400.1p  transcript_id AT4G14400.1  
At4g14400	chr4:008296335	0.0	W/8296335-8296962,8297091-8297623,8297707-8298360	AT4G14400.2  CDS  gene_syn ACCELERATED CELL DEATH 6, ACD6, DL3240W, FCAALL.190  gene ACD6  function encodes a novel protein with putative ankyrin and transmembrane regions. It is a member of one of the largest uncharacterized gene families in higher plants. The gene is involved in resistance to Pseudomonas syringae.  go_component membrane|GO:0016020|14507999|ISS  go_component membrane|GO:0016020|16297071|IDA  go_process cell death|GO:0008219|10488236|IMP  go_process response to salicylic acid stimulus|GO:0009751|10488236|IMP  go_process defense response to bacterium, incompatible interaction|GO:0009816|10488236|IMP  go_function protein binding|GO:0005515||ISS  product ACD6 (ACCELERATED CELL DEATH 6); protein binding  note ACCELERATED CELL DEATH 6 (ACD6); FUNCTIONS IN: protein binding; INVOLVED IN: defense response to bacterium, incompatible interaction, cell death, response to salicylic acid stimulus; LOCATED IN: membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT4G14390.1); Has 14586 Blast hits to 7378 proteins in 308 species: Archae - 20; Bacteria - 762; Metazoa - 8487; Fungi - 672; Plants - 1049; Viruses - 52; Other Eukaryotes - 3544 (source: NCBI BLink).  protein_id AT4G14400.2p  transcript_id AT4G14400.2  protein_id AT4G14400.2p  transcript_id AT4G14400.2  
At4g14400	chr4:008296335	0.0	W/8296335-8296962,8297091-8297623,8297707-8298360	AT4G14400.3  CDS  gene_syn ACCELERATED CELL DEATH 6, ACD6, DL3240W, FCAALL.190  gene ACD6  function encodes a novel protein with putative ankyrin and transmembrane regions. It is a member of one of the largest uncharacterized gene families in higher plants. The gene is involved in resistance to Pseudomonas syringae.  go_component membrane|GO:0016020|14507999|ISS  go_component membrane|GO:0016020|16297071|IDA  go_process cell death|GO:0008219|10488236|IMP  go_process response to salicylic acid stimulus|GO:0009751|10488236|IMP  go_process defense response to bacterium, incompatible interaction|GO:0009816|10488236|IMP  go_function protein binding|GO:0005515||ISS  product ACD6 (ACCELERATED CELL DEATH 6); protein binding  note ACCELERATED CELL DEATH 6 (ACD6); FUNCTIONS IN: protein binding; INVOLVED IN: defense response to bacterium, incompatible interaction, cell death, response to salicylic acid stimulus; LOCATED IN: membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT4G14390.1); Has 14586 Blast hits to 7378 proteins in 308 species: Archae - 20; Bacteria - 762; Metazoa - 8487; Fungi - 672; Plants - 1049; Viruses - 52; Other Eukaryotes - 3544 (source: NCBI BLink).  protein_id AT4G14400.3p  transcript_id AT4G14400.3  protein_id AT4G14400.3p  transcript_id AT4G14400.3  
At4g14403	chr4:008299042	0.0	C/8299042-8299134	AT4G14403.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G14403.1p  transcript_id AT4G14403.1  protein_id AT4G14403.1p  transcript_id AT4G14403.1  
At4g14410	chr4:008300077	0.0	W/8300077-8300132,8300456-8300764,8300849-8300929,8301011-8301173,8301261-8301503	AT4G14410.1  CDS  gene_syn DL3245W, FCAALL.201  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT3G23210.1); Has 519 Blast hits to 516 proteins in 79 species: Archae - 2; Bacteria - 7; Metazoa - 23; Fungi - 3; Plants - 460; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT4G14410.1p  transcript_id AT4G14410.1  protein_id AT4G14410.1p  transcript_id AT4G14410.1  
At4g14410	chr4:008300418	0.0	W/8300418-8300764,8300849-8300929,8301011-8301173,8301261-8301503	AT4G14410.2  CDS  gene_syn DL3245W, FCAALL.201  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT3G23210.1); Has 518 Blast hits to 515 proteins in 78 species: Archae - 2; Bacteria - 7; Metazoa - 23; Fungi - 3; Plants - 459; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT4G14410.2p  transcript_id AT4G14410.2  protein_id AT4G14410.2p  transcript_id AT4G14410.2  
At4g14415	chr4:008301725	0.0	C/8301725-8301798	AT4G14415.1  tRNA  gene_syn 68169.TRNA-THR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Thr (anticodon: AGT)  transcript_id AT4G14415.1  
At4g14420	chr4:008303671	0.0	C/8303671-8303738,8302741-8302855,8302554-8302643,8302368-8302466,8302171-8302275	AT4G14420.1  CDS  gene_syn DL3250C, FCAALL.105  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  product lesion inducing protein-related  note lesion inducing protein-related; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HR-like lesion-inducer (InterPro:IPR008637); BEST Arabidopsis thaliana protein match is: lesion inducing protein-related (TAIR:AT1G04340.1); Has 95 Blast hits to 95 proteins in 17 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT4G14420.1p  transcript_id AT4G14420.1  protein_id AT4G14420.1p  transcript_id AT4G14420.1  
At4g14430	chr4:008304910	0.0	C/8304910-8305632	AT4G14430.1  CDS  gene_syn ARABIDOPSIS THALIANA DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 2, ATECI2, DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 2, DL3255C, ECHIB, ECI2, ENOYL-COA HYDRATASE/ISOMERASE B, FCAALL.43, IBR10, INDOLE-3-BUTYRIC ACID RESPONSE 10, PEC12  gene IBR10  function Encodes a peroxisomal delta3, delta2-enoyl CoA isomerase, involved in unsaturated fatty acid degradation. This enzyme might also be involved in the conversion of indole-3-butyric acid to indole-3-acetic acid via a beta-oxidation-like pathway.  go_component peroxisome|GO:0005777|17951448|IDA  go_process metabolic process|GO:0008152||ISS  go_process fatty acid catabolic process|GO:0009062|18657232|IMP  go_process indolebutyric acid metabolic process|GO:0080024|18725356|IMP  go_process response to indolebutyric acid stimulus|GO:0080026|18725356|IMP  go_function catalytic activity|GO:0003824||ISS  go_function dodecenoyl-CoA delta-isomerase activity|GO:0004165|18657232|IDA  go_function dodecenoyl-CoA delta-isomerase activity|GO:0004165|18657232|IGI  product IBR10 (INDOLE-3-BUTYRIC ACID RESPONSE 10); catalytic/ dodecenoyl-CoA delta-isomerase  note INDOLE-3-BUTYRIC ACID RESPONSE 10 (IBR10); FUNCTIONS IN: dodecenoyl-CoA delta-isomerase activity, catalytic activity; INVOLVED IN: fatty acid catabolic process, indolebutyric acid metabolic process, metabolic process, response to indolebutyric acid stimulus; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: HCD1 (3-HYDROXYACYL-COA DEHYDRATASE 1); carnitine racemase/ catalytic/ dodecenoyl-CoA delta-isomerase (TAIR:AT4G14440.1); Has 9776 Blast hits to 9775 proteins in 934 species: Archae - 114; Bacteria - 6083; Metazoa - 734; Fungi - 178; Plants - 167; Viruses - 0; Other Eukaryotes - 2500 (source: NCBI BLink).  protein_id AT4G14430.1p  transcript_id AT4G14430.1  protein_id AT4G14430.1p  transcript_id AT4G14430.1  
At4g14440	chr4:008306946	0.0	C/8306946-8307662	AT4G14440.1  CDS  gene_syn 3-HYDROXYACYL-COA DEHYDRATASE 1, ARABIDOPSIS THALIANA DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 3, ATECI3, DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 3, DL3260C, ECI3, FCAALL.212, HCD1  gene HCD1  function encodes a cytosolic delta3, delta2-enoyl CoA isomerase, involved in unsaturated fatty acid degradation  go_component nucleus|GO:0005634|18657232|IDA  go_component peroxisome|GO:0005777|18657232|IDA  go_component cytosol|GO:0005829|18657232|IDA  go_process metabolic process|GO:0008152||ISS  go_process fatty acid catabolic process|GO:0009062|18657232|IMP  go_function catalytic activity|GO:0003824||ISS  go_function dodecenoyl-CoA delta-isomerase activity|GO:0004165|18657232|IDA  go_function dodecenoyl-CoA delta-isomerase activity|GO:0004165|18657232|IGI  go_function carnitine racemase activity|GO:0008809||ISS  product HCD1 (3-HYDROXYACYL-COA DEHYDRATASE 1); carnitine racemase/ catalytic/ dodecenoyl-CoA delta-isomerase  note 3-HYDROXYACYL-COA DEHYDRATASE 1 (HCD1); FUNCTIONS IN: dodecenoyl-CoA delta-isomerase activity, catalytic activity, carnitine racemase activity; INVOLVED IN: fatty acid catabolic process, metabolic process; LOCATED IN: cytosol, peroxisome, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: IBR10 (INDOLE-3-BUTYRIC ACID RESPONSE 10); catalytic/ dodecenoyl-CoA delta-isomerase (TAIR:AT4G14430.1); Has 9791 Blast hits to 9790 proteins in 942 species: Archae - 130; Bacteria - 6185; Metazoa - 678; Fungi - 152; Plants - 163; Viruses - 0; Other Eukaryotes - 2483 (source: NCBI BLink).  protein_id AT4G14440.1p  transcript_id AT4G14440.1  protein_id AT4G14440.1p  transcript_id AT4G14440.1  
At4g14450	chr4:008309519	0.0	W/8309519-8309896	AT4G14450.1  CDS  gene_syn DL3265W, FCAALL.213  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23170.1); Has 63 Blast hits to 63 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G14450.1p  transcript_id AT4G14450.1  protein_id AT4G14450.1p  transcript_id AT4G14450.1  
At4g14455	chr4:008310482	0.0	W/8310482-8310495,8310799-8310949,8311415-8311471,8311560-8311619,8311720-8311805,8311914-8311938	AT4G14455.1  CDS  gene_syn ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14BB, ATBET12, ATBS14B, BET12, BET1P/SFT1P-LIKE PROTEIN 14BB, BS14B  gene ATBET12  function Encodes a Bet1/Sft1-like SNARE protein, which can only partially suppresses the temperature-sensitive growth defect in <i>sft1-1</i> yeast cells; however, it cannot support the deletion of the yeast BET1 gene (<i>bet1& 916;</i>). In yeast, Bet1p is the v-SNARE (soluble N-ethylmaleimide-sensitive factor adaptor protein receptor, V-type) involved in trafficking between the ER and Golgi.  go_process ER to Golgi vesicle-mediated transport|GO:0006888|11115874|NAS  go_process ER to Golgi vesicle-mediated transport|GO:0006888||ISS  go_function SNAP receptor activity|GO:0005484|11115874|NAS  go_function SNAP receptor activity|GO:0005484|11445081|IGI  go_function protein transporter activity|GO:0008565||ISS  product ATBET12; SNAP receptor/ protein transporter  note ATBET12; FUNCTIONS IN: protein transporter activity, SNAP receptor activity; INVOLVED IN: ER to Golgi vesicle-mediated transport; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: BS14A (BET1P/SFT1P-LIKE PROTEIN 14A); SNAP receptor/ protein transporter (TAIR:AT3G58170.1); Has 222 Blast hits to 221 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 18; Plants - 67; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT4G14455.1p  transcript_id AT4G14455.1  protein_id AT4G14455.1p  transcript_id AT4G14455.1  
At4g14460	chr4:008314078	0.0	W/8314078-8318830	AT4G14460.1  mRNA_TE_gene  pseudo  gene_syn DL3270W, FCAALL.216  note Transposable element gene, copia-like retrotransposon family, has a 4.2e-253 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At4g14465	chr4:008320972	0.0	W/8320972-8321817	AT4G14465.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DNA-binding protein-related  note DNA-binding protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: DNA-binding protein-related (TAIR:AT3G04570.1); Has 440 Blast hits to 437 proteins in 23 species: Archae - 0; Bacteria - 12; Metazoa - 8; Fungi - 0; Plants - 420; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G14465.1p  transcript_id AT4G14465.1  protein_id AT4G14465.1p  transcript_id AT4G14465.1  
At4g14470	chr4:008327626	0.0	W/8327626-8328633	AT4G14470.1  mRNA_TE_gene  pseudo  gene_syn DL3275W, FCAALL.217  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.1e-25 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At4g14480	chr4:008330081	0.0	C/8330081-8331544	AT4G14480.1  CDS  gene_syn DL3280C, FCAALL.219  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G14720.1); Has 88081 Blast hits to 86852 proteins in 2143 species: Archae - 39; Bacteria - 7567; Metazoa - 38124; Fungi - 8022; Plants - 17692; Viruses - 433; Other Eukaryotes - 16204 (source: NCBI BLink).  protein_id AT4G14480.1p  transcript_id AT4G14480.1  protein_id AT4G14480.1p  transcript_id AT4G14480.1  
At4g14490	chr4:008332414	0.0	C/8332414-8333574	AT4G14490.1  CDS  gene_syn DL3285C, FCAALL.220  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product forkhead-associated domain-containing protein / FHA domain-containing protein  note forkhead-associated domain-containing protein / FHA domain-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: forkhead-associated domain-containing protein / FHA domain-containing protein / AT hook motif-containing protein (TAIR:AT3G02400.1); Has 1075 Blast hits to 1048 proteins in 243 species: Archae - 14; Bacteria - 671; Metazoa - 68; Fungi - 54; Plants - 81; Viruses - 0; Other Eukaryotes - 187 (source: NCBI BLink).  protein_id AT4G14490.1p  transcript_id AT4G14490.1  protein_id AT4G14490.1p  transcript_id AT4G14490.1  
At4g14500	chr4:008334391	0.0	W/8334391-8334764,8334958-8335120,8335566-8335742,8335830-8335913,8336437-8336518,8336601-8337022	AT4G14500.1  CDS  gene_syn DL3290W, FCAALL.198  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23080.1); Has 257 Blast hits to 256 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 167; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT4G14500.1p  transcript_id AT4G14500.1  protein_id AT4G14500.1p  transcript_id AT4G14500.1  
At4g14500	chr4:008334391	0.0	W/8334391-8334764,8334958-8335120,8335566-8335765,8335847-8335913,8336006-8336054,8336437-8336468	AT4G14500.2  CDS  gene_syn DL3290W, FCAALL.198  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23080.1).  protein_id AT4G14500.2p  transcript_id AT4G14500.2  protein_id AT4G14500.2p  transcript_id AT4G14500.2  
At4g14504	chr4:008336207	0.0	W/8336207-8336331	AT4G14504.1  miRNA  gene_syn MICRORNA852A, MIR852A  gene MIR852A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: AAGAUAAGCGCCUUAGUUCUGA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR852A (MICRORNA852A); miRNA  transcript_id AT4G14504.1  
At4g14510	chr4:008340200	0.0	C/8340200-8341057,8339579-8340053,8339297-8339502,8338804-8339241,8338532-8338688,8338134-8338426,8337912-8337971,8337715-8337810,8337390-8337605	AT4G14510.1  CDS  gene_syn DL3295C, FCAALL.243  go_component chloroplast|GO:0009507||IEA  go_function RNA binding|GO:0003723||IEA  go_process biological_process|GO:0008150||ND  product RNA binding  note RNA binding; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA binding (TAIR:AT3G23070.1); Has 741 Blast hits to 659 proteins in 103 species: Archae - 3; Bacteria - 29; Metazoa - 189; Fungi - 60; Plants - 256; Viruses - 13; Other Eukaryotes - 191 (source: NCBI BLink).  protein_id AT4G14510.1p  transcript_id AT4G14510.1  protein_id AT4G14510.1p  transcript_id AT4G14510.1  
At4g14520	chr4:008342471	0.0	W/8342471-8343073	AT4G14520.1  CDS  gene_syn DL3300W, FCAALL.246  function Protein of unknown function homologous to the DNA-directed RNA polymerase II subunit, NRPB7 (At5g59180)  go_function RNA binding|GO:0003723||IEA  product DNA-directed RNA polymerase II-related  note DNA-directed RNA polymerase II-related; FUNCTIONS IN: RNA binding; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), S1, RNA binding (InterPro:IPR003029); BEST Arabidopsis thaliana protein match is: NRPE7; DNA-directed RNA polymerase (TAIR:AT4G14660.1); Has 58 Blast hits to 58 proteins in 12 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G14520.1p  transcript_id AT4G14520.1  protein_id AT4G14520.1p  transcript_id AT4G14520.1  
At4g14520	chr4:008342471	0.0	W/8342471-8343073	AT4G14520.2  CDS  gene_syn DL3300W, FCAALL.246  function Protein of unknown function homologous to the DNA-directed RNA polymerase II subunit, NRPB7 (At5g59180)  go_function RNA binding|GO:0003723||IEA  product DNA-directed RNA polymerase II-related  note DNA-directed RNA polymerase II-related; FUNCTIONS IN: RNA binding; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), S1, RNA binding (InterPro:IPR003029); BEST Arabidopsis thaliana protein match is: NRPE7; DNA-directed RNA polymerase (TAIR:AT4G14660.1); Has 58 Blast hits to 58 proteins in 12 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G14520.2p  transcript_id AT4G14520.2  protein_id AT4G14520.2p  transcript_id AT4G14520.2  
At4g14530	chr4:008343476	0.0	C/8343476-8343883	AT4G14530.1  CDS  gene_syn DL3305C, FCAALL.249  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: AGL97 (AGAMOUS-LIKE 97); DNA binding / transcription factor (TAIR:AT1G46408.1); Has 17 Blast hits to 17 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G14530.1p  transcript_id AT4G14530.1  protein_id AT4G14530.1p  transcript_id AT4G14530.1  
At4g14540	chr4:008344663	0.0	W/8344663-8345148	AT4G14540.1  CDS  gene_syn DL3310W, FCAALL.252, NF-YB3, NUCLEAR FACTOR Y, SUBUNIT B3  gene NF-YB3  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT B3 (NF-YB3); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2); transcription factor (TAIR:AT5G47640.1); Has 1011 Blast hits to 1011 proteins in 186 species: Archae - 0; Bacteria - 1; Metazoa - 394; Fungi - 233; Plants - 298; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT4G14540.1p  transcript_id AT4G14540.1  protein_id AT4G14540.1p  transcript_id AT4G14540.1  
At4g14548	chr4:008347010	0.0	W/8347010-8347764	AT4G14548.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G14548.1  
At4g14550	chr4:008349703	0.0	C/8349703-8349923,8349282-8349511,8349009-8349144,8348635-8348696,8348521-8348558	AT4G14550.1  CDS  gene_syn DL3315C, FCAALL.254, IAA14, INDOLE-3-ACETIC ACID INDUCIBLE 14, SLR, SOLITARY ROOT  gene IAA14  function IAA14 is a member of the Aux/IAA protein family. Involved in lateral root development. Gain of function mutation decreases auxin-inducible gene expression. Protein is localized to the nucleus. Expressed in stele and root tip epidermis. Functions as a negative regulator of ARF7/19.  go_component nucleus|GO:0005634|11862947|IDA  go_process response to auxin stimulus|GO:0009733|12036262|TAS  go_process lateral root morphogenesis|GO:0010102|11862947|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein binding|GO:0005515|16236149|IPI  go_function transcription repressor activity|GO:0016564|11862947|IMP  product IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14); protein binding / transcription factor/ transcription repressor  note INDOLE-3-ACETIC ACID INDUCIBLE 14 (IAA14); FUNCTIONS IN: protein binding, transcription repressor activity, transcription factor activity; INVOLVED IN: response to auxin stimulus, lateral root morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA7 (INDOLE-3-ACETIC ACID 7); transcription factor (TAIR:AT3G23050.1); Has 1025 Blast hits to 1025 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1024; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G14550.1p  transcript_id AT4G14550.1  protein_id AT4G14550.1p  transcript_id AT4G14550.1  
At4g14560	chr4:008361182	0.0	W/8361182-8361339,8361432-8361780	AT4G14560.1  CDS  gene_syn AUX/IAA PROTEIN 1, AUXIN RESISTANT 5, AXR5, DL3320W, FCAALL.409, IAA1, INDOLE-3-ACETIC ACID INDUCIBLE  gene IAA1  function auxin (indole-3-acetic acid) induced gene (IAA1) encoding a short-lived nuclear-localized transcriptional regulator protein.  go_component nucleus|GO:0005634|8278386|IDA  go_process response to auxin stimulus|GO:0009733|7658471|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein binding|GO:0005515|9342315|IPI  product IAA1 (INDOLE-3-ACETIC ACID INDUCIBLE); protein binding / transcription factor  note INDOLE-3-ACETIC ACID INDUCIBLE (IAA1); FUNCTIONS IN: protein binding, transcription factor activity; INVOLVED IN: response to auxin stimulus; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA2 (INDOLE-3-ACETIC ACID INDUCIBLE 2); transcription factor (TAIR:AT3G23030.1); Has 1164 Blast hits to 1164 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1163; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G14560.1p  transcript_id AT4G14560.1  protein_id AT4G14560.1p  transcript_id AT4G14560.1  
At4g14570	chr4:008362586	0.0	W/8362586-8362736,8362855-8363158,8363240-8363464,8363545-8363742,8363839-8363913,8364122-8364260,8364417-8364568,8364653-8364735,8364842-8364960,8365043-8365121,8365206-8365386,8365483-8365543,8365626-8365748,8365825-8366016,8366092-8366160,8366275-8366351,8366459-8366525	AT4G14570.1  CDS  gene_syn DL3325W, FCAALL.258  go_component vacuole|GO:0005773|15215502|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process proteolysis|GO:0006508||IEA  go_function serine-type peptidase activity|GO:0008236||IEA  product acylaminoacyl-peptidase-related  note acylaminoacyl-peptidase-related; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase active site region (InterPro:IPR001375); BEST Arabidopsis thaliana protein match is: serine-type peptidase (TAIR:AT5G36210.1); Has 6161 Blast hits to 6149 proteins in 818 species: Archae - 138; Bacteria - 2948; Metazoa - 891; Fungi - 224; Plants - 152; Viruses - 0; Other Eukaryotes - 1808 (source: NCBI BLink).  protein_id AT4G14570.1p  transcript_id AT4G14570.1  protein_id AT4G14570.1p  transcript_id AT4G14570.1  
At4g14580	chr4:008367887	0.0	C/8367887-8369167	AT4G14580.1  CDS  gene_syn CBL-interacting protein kinase 4, CIPK4, DL3330C, FCAALL.259, SNF1-RELATED PROTEIN KINASE 3.3, SnRK3.3  gene CIPK4  function CBL-interacting protein kinase  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product CIPK4 (CBL-interacting protein kinase 4); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note CBL-interacting protein kinase 4 (CIPK4); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: signal transduction, protein amino acid phosphorylation; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CIPK7 (CBL-INTERACTING PROTEIN KINASE 7); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT3G23000.1); Has 93790 Blast hits to 92286 proteins in 3119 species: Archae - 68; Bacteria - 8582; Metazoa - 40320; Fungi - 8550; Plants - 17996; Viruses - 479; Other Eukaryotes - 17795 (source: NCBI BLink).  protein_id AT4G14580.1p  transcript_id AT4G14580.1  protein_id AT4G14580.1p  transcript_id AT4G14580.1  
At4g14590	chr4:008374391	0.0	W/8374391-8374802,8374848-8375962	AT4G14590.1  CDS  gene_syn DL3335W, FCAALL.260, emb2739, embryo defective 2739  gene emb2739  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product emb2739 (embryo defective 2739)  note embryo defective 2739 (emb2739); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 127 Blast hits to 126 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 107; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT4G14590.1p  transcript_id AT4G14590.1  protein_id AT4G14590.1p  transcript_id AT4G14590.1  
At4g14600	chr4:008376562	0.0	W/8376562-8376632,8376784-8376907,8377249-8377305,8377917-8378078	AT4G14600.1  CDS  gene_syn DL3340W, FCAALL.126  go_component plasma membrane|GO:0005886|17644812|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29060.1); Has 95 Blast hits to 95 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 19; Plants - 44; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G14600.1p  transcript_id AT4G14600.1  protein_id AT4G14600.1p  transcript_id AT4G14600.1  
At4g14605	chr4:008378815	0.0	W/8378815-8378885,8378973-8379022,8379124-8379342,8379423-8380564	AT4G14605.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: EMB2219 (embryo defective 2219) (TAIR:AT2G21710.1); Has 760 Blast hits to 374 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 99; Fungi - 0; Plants - 624; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT4G14605.1p  transcript_id AT4G14605.1  protein_id AT4G14605.1p  transcript_id AT4G14605.1  
At4g14610	chr4:008380848	0.0	C/8380848-8383496	AT4G14610.1  pseudogenic_transcript  pseudo  gene_syn DL3345C, FCAALL.272  note pseudogene, disease resistance protein (CC-NBS-LRR class), putative, domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein.; blastp match of 45% identity and 2.2e-162 P-value to GP|24461866|gb|AAN62353.1|AF506028_20|AF506028 NBS-LRR type disease resistance protein {Poncirus trifoliata}  
At4g14615	chr4:008383842	0.0	W/8383842-8383970,8384713-8384814	AT4G14615.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52825.1); Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G14615.1p  transcript_id AT4G14615.1  protein_id AT4G14615.1p  transcript_id AT4G14615.1  
At4g14620	chr4:008390119	0.0	C/8390119-8390448,8389851-8390040,8389246-8389751	AT4G14620.1  CDS  gene_syn DL3350C, FCAALL.275  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22970.1); Has 217 Blast hits to 217 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 212; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G14620.1p  transcript_id AT4G14620.1  protein_id AT4G14620.1p  transcript_id AT4G14620.1  
At4g14622	chr4:008390606	0.0	C/8390606-8390701	AT4G14622.1  CDS  gene_syn CPuORF60, Conserved peptide upstream open reading frame 60  gene CPuORF60  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF60 represents a conserved upstream opening reading frame relative to major ORF AT4G14620.1  product CPuORF60 (Conserved peptide upstream open reading frame 60)  note Conserved peptide upstream open reading frame 60 (CPuORF60); Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G14622.1p  transcript_id AT4G14622.1  protein_id AT4G14622.1p  transcript_id AT4G14622.1  
At4g14630	chr4:008392920	0.0	W/8392920-8393049,8393142-8393680	AT4G14630.1  CDS  gene_syn DL3355W, FCAALL.278, GERMIN-LIKE PROTEIN 9, GLP9  gene GLP9  function germin-like protein with N-terminal signal sequence that may target it to the vacuole, plasma membrane and/or outside the cell.  go_process response to salt stress|GO:0009651|17916636|IEP  go_function manganese ion binding|GO:0030145||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_component plant-type vacuole|GO:0000325|9869400|ISS  go_component extracellular region|GO:0005576|9869400|ISS  go_component plasma membrane|GO:0005886|9869400|ISS  product GLP9 (GERMIN-LIKE PROTEIN 9); manganese ion binding / nutrient reservoir  note GERMIN-LIKE PROTEIN 9 (GLP9); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: response to salt stress; LOCATED IN: extracellular region, plasma membrane, plant-type vacuole; EXPRESSED IN: stem, sepal, hypocotyl, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: manganese ion binding / nutrient reservoir (TAIR:AT5G38940.1); Has 868 Blast hits to 865 proteins in 80 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 30; Plants - 827; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT4G14630.1p  transcript_id AT4G14630.1  protein_id AT4G14630.1p  transcript_id AT4G14630.1  
At4g14640	chr4:008397800	0.0	W/8397800-8397878,8397988-8398145,8398567-8398647,8399859-8399996	AT4G14640.1  CDS  gene_syn CALMODULIN 8, CAM8, DL3360W, FCAALL.157  gene CAM8  function encodes a divergent member of calmodulin, which is an EF-hand family of Ca2+-binding proteins. This gene is expressed in leaves, flowers and siliques. The gene functionally complements yeast calmodulin 1 (CAM1). Also the protein does not form formed a complex with a basic amphiphilic helical peptide in the presence of Ca2+ in vitro. Authors suggest that this gene may represent a Ca2+-binding sensor protein that interacts with a more limited set of target proteins than do more conventional CaM isoforms.  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_process detection of calcium ion|GO:0005513|11855649|ISS  go_process calcium-mediated signaling|GO:0019722|11855649|IGI  go_function calcium ion binding|GO:0005509||ISS  product CAM8 (CALMODULIN 8); calcium ion binding  note CALMODULIN 8 (CAM8); FUNCTIONS IN: calcium ion binding; INVOLVED IN: detection of calcium ion, calcium-mediated signaling; LOCATED IN: cellular_component unknown; EXPRESSED IN: fruit, root, flower, leaf; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin, putative (TAIR:AT3G22930.1); Has 26293 Blast hits to 17814 proteins in 1427 species: Archae - 0; Bacteria - 103; Metazoa - 11947; Fungi - 5593; Plants - 4499; Viruses - 2; Other Eukaryotes - 4149 (source: NCBI BLink).  protein_id AT4G14640.1p  transcript_id AT4G14640.1  protein_id AT4G14640.1p  transcript_id AT4G14640.1  
At4g14650	chr4:008402784	0.0	C/8402784-8402817,8401965-8402702,8400760-8401886	AT4G14650.1  CDS  gene_syn DL3365C, FCAALL.281  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; Has 2214 Blast hits to 1629 proteins in 249 species: Archae - 9; Bacteria - 179; Metazoa - 702; Fungi - 214; Plants - 99; Viruses - 45; Other Eukaryotes - 966 (source: NCBI BLink).  protein_id AT4G14650.1p  transcript_id AT4G14650.1  protein_id AT4G14650.1p  transcript_id AT4G14650.1  
At4g14660	chr4:008406500	0.0	C/8406500-8407036	AT4G14660.1  CDS  gene_syn DL3370C, FCAALL.283, NRPE7  gene NRPE7  function Non-catalytic subunit specific to DNA-directed RNA polymerase V; homologous to budding yeast RPB7  go_process transcription|GO:0006350||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_component DNA-directed RNA polymerase V complex|GO:0080137|19110459|IPI  go_process transcription|GO:0006350||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product NRPE7; DNA-directed RNA polymerase  note NRPE7; FUNCTIONS IN: DNA-directed RNA polymerase activity; INVOLVED IN: transcription; LOCATED IN: DNA-directed RNA polymerase V complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), RNA polymerase Rpb7, N-terminal (InterPro:IPR005576); BEST Arabidopsis thaliana protein match is: NRPD7; DNA-directed RNA polymerase (TAIR:AT3G22900.1); Has 451 Blast hits to 451 proteins in 191 species: Archae - 103; Bacteria - 0; Metazoa - 116; Fungi - 110; Plants - 62; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT4G14660.1p  transcript_id AT4G14660.1  protein_id AT4G14660.1p  transcript_id AT4G14660.1  
At4g14661	chr4:008408276	0.0	C/8408276-8408671	AT4G14661.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G47497; nucleic acid binding protein  
At4g14670	chr4:008410054	0.0	W/8410054-8410284,8410675-8411488,8411579-8411763,8411831-8412457,8412543-8412557	AT4G14670.1  CDS  gene_syn CLPB2, DL3375W, FCAALL.285  gene CLPB2  function This locus was originally annotated as encoding ClpB2 (also referred to as Hsp92.7), which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family. However, according to Lee et al. (2007, Plant Journal, 49:115-127), there is no evidence for expression of an appropriate-sized mRNA from this locus. Re-annotation of the genome indicates that this locus potentially encodes a 68.8-kDa protein, containing only the N-terminal two thirds of the originally predicted open reading frame. This locus contains a 626-bp deletion in WS ecotype compared with the Col ecotype, which eliminates residues 1-86 of the predicted protein.  go_process protein metabolic process|GO:0019538||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component cellular_component|GO:0005575||ND  product CLPB2; ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding  note CLPB2; FUNCTIONS IN: protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: protein metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: ATPase associated with various cellular activities, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), Chaperonin clpA/B (InterPro:IPR001270), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding (TAIR:AT1G74310.1); Has 15968 Blast hits to 13965 proteins in 1712 species: Archae - 133; Bacteria - 9102; Metazoa - 458; Fungi - 293; Plants - 287; Viruses - 13; Other Eukaryotes - 5682 (source: NCBI BLink).  protein_id AT4G14670.1p  transcript_id AT4G14670.1  protein_id AT4G14670.1p  transcript_id AT4G14670.1  
At4g14680	chr4:008414806	0.0	C/8414806-8415311,8414204-8414609,8413857-8414117,8413675-8413761,8413443-8413580	AT4G14680.1  CDS  gene_syn APS3, DL3380C, FCAALL.128  gene APS3  function ATP sulfurylase  go_component chloroplast|GO:0009507|10806350|NAS  go_process sulfate assimilation|GO:0000103|7487067|TAS  go_process sulfate assimilation|GO:0000103||ISS  go_function sulfate adenylyltransferase (ATP) activity|GO:0004781|7487067|IMP  go_function sulfate adenylyltransferase (ATP) activity|GO:0004781||ISS  product APS3; sulfate adenylyltransferase (ATP)  note APS3; FUNCTIONS IN: sulfate adenylyltransferase (ATP) activity; INVOLVED IN: sulfate assimilation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), PUA-like (InterPro:IPR015947), ATP-sulfurylase (InterPro:IPR002650); BEST Arabidopsis thaliana protein match is: APS1 (ATP SULFURYLASE 1); sulfate adenylyltransferase (ATP) (TAIR:AT3G22890.1); Has 1519 Blast hits to 1517 proteins in 424 species: Archae - 54; Bacteria - 513; Metazoa - 217; Fungi - 151; Plants - 136; Viruses - 0; Other Eukaryotes - 448 (source: NCBI BLink).  protein_id AT4G14680.1p  transcript_id AT4G14680.1  protein_id AT4G14680.1p  transcript_id AT4G14680.1  
At4g14690	chr4:008418373	0.0	W/8418373-8418507,8418602-8418703,8418785-8419129	AT4G14690.1  CDS  gene_syn DL3385W, EARLY LIGHT-INDUCIBLE PROTEIN 2, ELIP2, FCAALL.232  gene ELIP2  function Encodes an early light-induced protein. ELIPs are thought not to be directly involved in the synthesis and assembly of specific photosynthetic complexes, but rather affect the biogenesis of all chlorophyll-binding complexes. A study (PMID 17553115) has shown that the chlorophyll synthesis pathway was downregulated as a result of constitutive ELIP2 expression, leading to decreased chlorophyll availability for the assembly of pigment-binding proteins for photosynthesis.  go_process response to red light|GO:0010114|17076805|IEP  go_process response to far red light|GO:0010218|17076805|IEP  go_process response to UV-B|GO:0010224|18266923|IEP  go_process regulation of chlorophyll biosynthetic process|GO:0010380|17553115|IMP  go_function chlorophyll binding|GO:0016168||ISS  product ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2); chlorophyll binding  note EARLY LIGHT-INDUCIBLE PROTEIN 2 (ELIP2); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: regulation of chlorophyll biosynthetic process, response to UV-B, response to red light, response to far red light; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN); chlorophyll binding (TAIR:AT3G22840.1); Has 218 Blast hits to 218 proteins in 40 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT4G14690.1p  transcript_id AT4G14690.1  protein_id AT4G14690.1p  transcript_id AT4G14690.1  
At4g14695	chr4:008419833	0.0	W/8419833-8419887,8420110-8420208,8420295-8420347,8420445-8420518,8420797-8420845	AT4G14695.1  CDS  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0041 (InterPro:IPR005336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22310.1); Has 614 Blast hits to 614 proteins in 145 species: Archae - 0; Bacteria - 0; Metazoa - 301; Fungi - 158; Plants - 96; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT4G14695.1p  transcript_id AT4G14695.1  protein_id AT4G14695.1p  transcript_id AT4G14695.1  
At4g14695	chr4:008419833	0.0	W/8419833-8419887,8420164-8420208,8420295-8420347,8420445-8420518,8420797-8420845	AT4G14695.2  CDS  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0041 (InterPro:IPR005336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22310.1); Has 339 Blast hits to 339 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 88; Plants - 66; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT4G14695.2p  transcript_id AT4G14695.2  protein_id AT4G14695.2p  transcript_id AT4G14695.2  
At4g14700	chr4:008422236	0.0	W/8422236-8424665	AT4G14700.1  CDS  gene_syn ATORC1A, DL3390W, FCAALL.93, ORC1A, ORIGIN RECOGNITION COMPLEX 1  gene ORC1A  function Encodes origin of replication complex 1a subunit.The protein contains a PHD domain,binds methylated DNA and appears to function as a transcriptional activator.  go_component origin recognition complex|GO:0000808|16179646|ISS  go_component nucleus|GO:0005634||ISS  go_process DNA replication|GO:0006260|16179646|ISS  go_process DNA replication|GO:0006260||ISS  go_process regulation of transcription|GO:0045449|19171893|IMP  go_function DNA binding|GO:0003677||ISS  go_function double-stranded methylated DNA binding|GO:0010385|19171893|IDA  product ORC1A (ORIGIN RECOGNITION COMPLEX 1); DNA binding / double-stranded methylated DNA binding  note ORIGIN RECOGNITION COMPLEX 1 (ORC1A); FUNCTIONS IN: double-stranded methylated DNA binding, DNA binding; INVOLVED IN: DNA replication, regulation of transcription; LOCATED IN: origin recognition complex, nucleus; EXPRESSED IN: 7 plant structures; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Bromo adjacent region (InterPro:IPR001025), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: ORC1B (ORIGIN OF REPLICATION COMPLEX 1B); DNA binding / double-stranded methylated DNA binding / protein binding (TAIR:AT4G12620.1); Has 4480 Blast hits to 4111 proteins in 274 species: Archae - 258; Bacteria - 4; Metazoa - 2889; Fungi - 555; Plants - 400; Viruses - 0; Other Eukaryotes - 374 (source: NCBI BLink).  protein_id AT4G14700.1p  transcript_id AT4G14700.1  protein_id AT4G14700.1p  transcript_id AT4G14700.1  
At4g14710	chr4:008426343	0.0	C/8426343-8426360,8425901-8426012,8425731-8425825,8425430-8425544,8425228-8425352,8425074-8425144,8424897-8424960	AT4G14710.1  CDS  gene_syn ATARD2, DL3395C, FCAALL.141  gene ATARD2  go_process methionine salvage|GO:0019509||IEA  go_component cellular_component|GO:0005575||ND  go_function acireductone dioxygenase [iron(II)-requiring] activity|GO:0010309|17144895|ISS  go_function metal ion binding|GO:0046872||ISS  product acireductone dioxygenase [iron(II)-requiring]/ metal ion binding  note ATARD2; FUNCTIONS IN: acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding; INVOLVED IN: methionine salvage; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Acireductone dioxygenase, ARD (InterPro:IPR004313), Cupin, RmlC-type (InterPro:IPR011051), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: ATARD1 (ACIREDUCTONE DIOXYGENASE 1); acireductone dioxygenase [iron(II)-requiring]/ metal ion binding (TAIR:AT4G14716.1); Has 1013 Blast hits to 1009 proteins in 303 species: Archae - 0; Bacteria - 338; Metazoa - 125; Fungi - 85; Plants - 390; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT4G14710.1p  transcript_id AT4G14710.1  protein_id AT4G14710.1p  transcript_id AT4G14710.1  
At4g14710	chr4:008426343	0.0	C/8426343-8426360,8425901-8426012,8425731-8425825,8425430-8425544,8425228-8425352,8425074-8425144,8424897-8424960	AT4G14710.2  CDS  gene_syn ATARD2, DL3395C, FCAALL.141  gene ATARD2  go_process methionine salvage|GO:0019509||IEA  go_component cellular_component|GO:0005575||ND  go_function acireductone dioxygenase [iron(II)-requiring] activity|GO:0010309|17144895|ISS  go_function metal ion binding|GO:0046872||ISS  product acireductone dioxygenase [iron(II)-requiring]/ metal ion binding  note ATARD2; FUNCTIONS IN: acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding; INVOLVED IN: methionine salvage; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Acireductone dioxygenase, ARD (InterPro:IPR004313), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: ATARD1 (ACIREDUCTONE DIOXYGENASE 1); acireductone dioxygenase [iron(II)-requiring]/ metal ion binding (TAIR:AT4G14716.1); Has 1013 Blast hits to 1009 proteins in 303 species: Archae - 0; Bacteria - 338; Metazoa - 125; Fungi - 85; Plants - 390; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT4G14710.2p  transcript_id AT4G14710.2  protein_id AT4G14710.2p  transcript_id AT4G14710.2  
At4g14710	chr4:008426343	0.0	C/8426343-8426360,8425901-8426012,8425731-8425825,8425430-8425544,8425228-8425352,8425074-8425144,8424943-8424955	AT4G14710.4  CDS  gene_syn ATARD2, DL3395C, FCAALL.141  gene ATARD2  go_process methionine salvage|GO:0019509||IEA  go_component cellular_component|GO:0005575||ND  go_function acireductone dioxygenase [iron(II)-requiring] activity|GO:0010309|17144895|ISS  go_function metal ion binding|GO:0046872||ISS  product acireductone dioxygenase [iron(II)-requiring]/ metal ion binding  note ATARD2; FUNCTIONS IN: acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding; INVOLVED IN: methionine salvage; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Acireductone dioxygenase, ARD (InterPro:IPR004313), Cupin, RmlC-type (InterPro:IPR011051), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: ATARD1 (ACIREDUCTONE DIOXYGENASE 1); acireductone dioxygenase [iron(II)-requiring]/ metal ion binding (TAIR:AT4G14716.1); Has 1015 Blast hits to 1011 proteins in 304 species: Archae - 0; Bacteria - 338; Metazoa - 125; Fungi - 85; Plants - 392; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT4G14710.4p  transcript_id AT4G14710.4  protein_id AT4G14710.4p  transcript_id AT4G14710.4  
At4g14710	chr4:008426343	0.0	C/8426343-8426360,8425901-8426012,8425731-8425825,8425430-8425544,8425228-8425352,8425074-8425147,8424897-8424960	AT4G14710.3  CDS  gene_syn ATARD2, DL3395C, FCAALL.141  gene ATARD2  go_process methionine salvage|GO:0019509||IEA  go_component cellular_component|GO:0005575||ND  go_function acireductone dioxygenase [iron(II)-requiring] activity|GO:0010309|17144895|ISS  go_function metal ion binding|GO:0046872||ISS  product acireductone dioxygenase [iron(II)-requiring]/ metal ion binding  note ATARD2; FUNCTIONS IN: acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding; INVOLVED IN: methionine salvage; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Acireductone dioxygenase, ARD (InterPro:IPR004313), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: ATARD1 (ACIREDUCTONE DIOXYGENASE 1); acireductone dioxygenase [iron(II)-requiring]/ metal ion binding (TAIR:AT4G14716.1); Has 998 Blast hits to 994 proteins in 297 species: Archae - 0; Bacteria - 327; Metazoa - 125; Fungi - 85; Plants - 390; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT4G14710.3p  transcript_id AT4G14710.3  protein_id AT4G14710.3p  transcript_id AT4G14710.3  
At4g14713	chr4:008429408	0.0	C/8429408-8429525,8429125-8429264,8428850-8429025,8428294-8428384,8428109-8428205,8427683-8427742,8427388-8427491	AT4G14713.2  CDS  gene_syn PEAPOD 1, PLANT-SPECIFIC PUTATIVE DNA-BINDING PROTEIN 1, PPD1, TIFY4A  gene PPD1  function PPD1 (and its paralog, PPD2) encode plant-specific putative DNA-binding proteins. PPD1 and PPD2 are not found in grasses. Overexpression of PPD reduces lamina size by promoting the early arrest of dispersed meristematic cells DMC proliferation during leaf and silique development. Deletion of the PPD locus increases leaf lamina size and results in dome-shaped rather than flat leaves. Siliques are also altered in shape because of extra lamina growth. The curvature of a deltappd leaf reflects the difference between excess growth of the lamina and a limitation to the extension capacity of its perimeter.  go_function metal ion binding|GO:0046872||IEA  go_function dioxygenase activity|GO:0051213||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of cell proliferation|GO:0042127|16916932|IMP  go_process leaf development|GO:0048366|16916932|IMP  product PPD1 (PEAPOD 1); dioxygenase/ metal ion binding  note TIFY4A; FUNCTIONS IN: dioxygenase activity, metal ion binding; INVOLVED IN: leaf development, regulation of cell proliferation; LOCATED IN: cellular_component unknown; EXPRESSED IN: ovary wall, leaf primordium, leaf apex; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), Acireductone dioxygenase, ARD (InterPro:IPR004313), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: PPD2; dioxygenase/ metal ion binding (TAIR:AT4G14720.1); Has 137 Blast hits to 136 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G14713.2p  transcript_id AT4G14713.2  protein_id AT4G14713.2p  transcript_id AT4G14713.2  
At4g14713	chr4:008429408	0.0	C/8429408-8429525,8429125-8429264,8428850-8429025,8428294-8428384,8428109-8428205,8427683-8427742,8427428-8427491,8427175-8427362,8427084-8427091	AT4G14713.1  CDS  gene_syn PEAPOD 1, PLANT-SPECIFIC PUTATIVE DNA-BINDING PROTEIN 1, PPD1, TIFY4A  gene PPD1  function PPD1 (and its paralog, PPD2) encode plant-specific putative DNA-binding proteins. PPD1 and PPD2 are not found in grasses. Overexpression of PPD reduces lamina size by promoting the early arrest of dispersed meristematic cells DMC proliferation during leaf and silique development. Deletion of the PPD locus increases leaf lamina size and results in dome-shaped rather than flat leaves. Siliques are also altered in shape because of extra lamina growth. The curvature of a deltappd leaf reflects the difference between excess growth of the lamina and a limitation to the extension capacity of its perimeter.  go_function metal ion binding|GO:0046872||IEA  go_function dioxygenase activity|GO:0051213||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of cell proliferation|GO:0042127|16916932|IMP  go_process leaf development|GO:0048366|16916932|IMP  product PPD1 (PEAPOD 1); dioxygenase/ metal ion binding  note PEAPOD 1 (PPD1); FUNCTIONS IN: dioxygenase activity, metal ion binding; INVOLVED IN: leaf development, regulation of cell proliferation; LOCATED IN: cellular_component unknown; EXPRESSED IN: ovary wall, leaf primordium, leaf apex; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), Acireductone dioxygenase, ARD (InterPro:IPR004313), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: PPD2; dioxygenase/ metal ion binding (TAIR:AT4G14720.1); Has 133 Blast hits to 132 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G14713.1p  transcript_id AT4G14713.1  protein_id AT4G14713.1p  transcript_id AT4G14713.1  
At4g14716	chr4:008431850	0.0	C/8431850-8431867,8431421-8431532,8431246-8431340,8430998-8431112,8430790-8430914,8430640-8430710,8430484-8430526	AT4G14716.1  CDS  gene_syn ACIREDUCTONE DIOXYGENASE 1, ATARD1  gene ATARD1  go_process methionine salvage|GO:0019509||IEA  go_component cellular_component|GO:0005575||ND  go_function acireductone dioxygenase [iron(II)-requiring] activity|GO:0010309|17144895|ISS  go_function metal ion binding|GO:0046872||ISS  product ATARD1 (ACIREDUCTONE DIOXYGENASE 1); acireductone dioxygenase [iron(II)-requiring]/ metal ion binding  note ACIREDUCTONE DIOXYGENASE 1 (ATARD1); FUNCTIONS IN: acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding; INVOLVED IN: methionine salvage; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Acireductone dioxygenase, ARD (InterPro:IPR004313), Cupin, RmlC-type (InterPro:IPR011051), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: acireductone dioxygenase [iron(II)-requiring]/ metal ion binding (TAIR:AT4G14710.2); Has 1016 Blast hits to 1012 proteins in 304 species: Archae - 0; Bacteria - 340; Metazoa - 125; Fungi - 85; Plants - 390; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT4G14716.1p  transcript_id AT4G14716.1  protein_id AT4G14716.1p  transcript_id AT4G14716.1  
At4g14720	chr4:008434817	0.0	C/8434817-8434934,8434495-8434634,8434181-8434359,8433605-8433695,8433420-8433516,8433051-8433110,8432791-8432854,8432527-8432717,8432452-8432459	AT4G14720.1  CDS  gene_syn DL3400C, FCAALL.297, PEAPOD 2, PPD2, TIFY4B  gene PPD2  function PPD2 (and its paralog, PPD1) encode plant-specific putative DNA-binding proteins. Deletion of the PPD locus increases leaf lamina size and results in dome-shaped rather than flat leaves. Siliques are also altered in shape because of extra lamina growth.  go_function metal ion binding|GO:0046872||IEA  go_function dioxygenase activity|GO:0051213||IEA  go_component cellular_component|GO:0005575||ND  go_process leaf development|GO:0048366|16916932|IMP  product PPD2; dioxygenase/ metal ion binding  note PPD2; FUNCTIONS IN: dioxygenase activity, metal ion binding; INVOLVED IN: leaf development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), Acireductone dioxygenase, ARD (InterPro:IPR004313), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: PPD1 (PEAPOD 1); dioxygenase/ metal ion binding (TAIR:AT4G14713.1); Has 169 Blast hits to 168 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G14720.1p  transcript_id AT4G14720.1  protein_id AT4G14720.1p  transcript_id AT4G14720.1  
At4g14723	chr4:008440167	0.0	W/8440167-8440263,8440461-8440693	AT4G14723.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1); Has 130 Blast hits to 130 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 130; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G14723.1p  transcript_id AT4G14723.1  protein_id AT4G14723.1p  transcript_id AT4G14723.1  
At4g14730	chr4:008448607	0.0	W/8448607-8448844,8449125-8449238,8449568-8449725,8449804-8450001	AT4G14730.1  CDS  gene_syn DL3405W, FCAALL.300  go_function glutamate binding|GO:0016595||ISS  product transmembrane protein-related  note transmembrane protein-related; FUNCTIONS IN: glutamate binding; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0005 (InterPro:IPR006214); BEST Arabidopsis thaliana protein match is: glutamate binding (TAIR:AT1G03070.1); Has 3460 Blast hits to 3460 proteins in 899 species: Archae - 0; Bacteria - 1653; Metazoa - 617; Fungi - 86; Plants - 108; Viruses - 56; Other Eukaryotes - 940 (source: NCBI BLink).  protein_id AT4G14730.1p  transcript_id AT4G14730.1  protein_id AT4G14730.1p  transcript_id AT4G14730.1  
At4g14740	chr4:008452229	0.0	C/8452229-8452679,8451749-8451991,8451616-8451665,8451205-8451262,8450567-8450775	AT4G14740.3  CDS  gene_syn DL3410C, FCAALL.302  go_process signal transduction|GO:0007165|15358268|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product phosphoinositide binding  note phosphoinositide binding; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Pleckstrin-like, plant (InterPro:IPR013666), Protein of unknown function DUF828, plant (InterPro:IPR008546); BEST Arabidopsis thaliana protein match is: phosphoinositide binding (TAIR:AT3G22810.1); Has 309 Blast hits to 211 proteins in 37 species: Archae - 0; Bacteria - 38; Metazoa - 28; Fungi - 10; Plants - 113; Viruses - 2; Other Eukaryotes - 118 (source: NCBI BLink).  protein_id AT4G14740.3p  transcript_id AT4G14740.3  protein_id AT4G14740.3p  transcript_id AT4G14740.3  
At4g14740	chr4:008453635	0.0	C/8453635-8453946,8453157-8453267,8452229-8452673,8451749-8451991,8451616-8451665,8451205-8451262,8450567-8450775	AT4G14740.1  CDS  gene_syn DL3410C, FCAALL.302  go_process signal transduction|GO:0007165|15358268|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product phosphoinositide binding  note phosphoinositide binding; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Pleckstrin-like, plant (InterPro:IPR013666), Protein of unknown function DUF828, plant (InterPro:IPR008546); BEST Arabidopsis thaliana protein match is: phosphoinositide binding (TAIR:AT3G22810.1); Has 435 Blast hits to 313 proteins in 75 species: Archae - 0; Bacteria - 60; Metazoa - 80; Fungi - 18; Plants - 135; Viruses - 9; Other Eukaryotes - 133 (source: NCBI BLink).  protein_id AT4G14740.1p  transcript_id AT4G14740.1  protein_id AT4G14740.1p  transcript_id AT4G14740.1  
At4g14740	chr4:008453635	0.0	C/8453635-8453946,8453157-8453267,8452229-8452673,8451749-8451991,8451616-8451665,8451205-8451262,8450567-8450775	AT4G14740.2  CDS  gene_syn DL3410C, FCAALL.302  go_process signal transduction|GO:0007165|15358268|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product phosphoinositide binding  note phosphoinositide binding; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Pleckstrin-like, plant (InterPro:IPR013666), Protein of unknown function DUF828, plant (InterPro:IPR008546); BEST Arabidopsis thaliana protein match is: phosphoinositide binding (TAIR:AT3G22810.1); Has 435 Blast hits to 313 proteins in 75 species: Archae - 0; Bacteria - 60; Metazoa - 80; Fungi - 18; Plants - 135; Viruses - 9; Other Eukaryotes - 133 (source: NCBI BLink).  protein_id AT4G14740.2p  transcript_id AT4G14740.2  protein_id AT4G14740.2p  transcript_id AT4G14740.2  
At4g14743	chr4:008458474	0.0	C/8458474-8458755	AT4G14743.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein, similar to putative reverse transcriptase  
At4g14746	chr4:008464221	0.0	C/8464221-8464326,8463580-8463723,8463411-8463497,8463058-8463183,8462884-8462979,8462720-8462799	AT4G14746.1  CDS  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; CONTAINS InterPro DOMAIN/s: EGF (InterPro:IPR006210); Has 201 Blast hits to 179 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 168; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G14746.1p  transcript_id AT4G14746.1  protein_id AT4G14746.1p  transcript_id AT4G14746.1  
At4g14750	chr4:008470449	0.0	W/8470449-8470805,8470919-8471137,8471231-8471791,8471877-8471903	AT4G14750.1  CDS  gene_syn DL3415W, FCAALL.303, IQ-domain 19, IQD19  gene IQD19  go_function calmodulin binding|GO:0005516||ISS  product IQD19 (IQ-domain 19); calmodulin binding  note IQ-domain 19 (IQD19); FUNCTIONS IN: calmodulin binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQD6 (IQ-domain 6); calmodulin binding (TAIR:AT2G26180.1); Has 1933 Blast hits to 1594 proteins in 186 species: Archae - 4; Bacteria - 145; Metazoa - 628; Fungi - 154; Plants - 670; Viruses - 66; Other Eukaryotes - 266 (source: NCBI BLink).  protein_id AT4G14750.1p  transcript_id AT4G14750.1  protein_id AT4G14750.1p  transcript_id AT4G14750.1  
At4g14760	chr4:008475718	0.0	W/8475718-8475817,8475967-8479973,8480069-8481094	AT4G14760.1  CDS  gene_syn DL3420W, FCAALL.305  go_component nucleus|GO:0005634|14617066|IDA  product unknown protein  note LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053), KIP1-like (InterPro:IPR011684); BEST Arabidopsis thaliana protein match is: kinase interacting family protein (TAIR:AT3G22790.1); Has 167525 Blast hits to 63593 proteins in 2151 species: Archae - 1921; Bacteria - 21978; Metazoa - 82150; Fungi - 11567; Plants - 6203; Viruses - 845; Other Eukaryotes - 42861 (source: NCBI BLink).  protein_id AT4G14760.1p  transcript_id AT4G14760.1  protein_id AT4G14760.1p  transcript_id AT4G14760.1  
At4g14770	chr4:008484763	0.0	C/8484763-8484825,8483419-8484108,8482983-8483341,8482825-8482896,8482559-8482739,8482377-8482472,8482214-8482280,8481974-8482121,8481522-8481894	AT4G14770.1  CDS  gene_syn ATTCX2, DL3425C, FCAALL.306, TCX2, TESMIN/TSO1-LIKE CXC 2  gene TCX2  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product TCX2 (TESMIN/TSO1-LIKE CXC 2); transcription factor  note TESMIN/TSO1-LIKE CXC 2 (TCX2); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Tesmin/TSO1-like, CXC (InterPro:IPR005172); BEST Arabidopsis thaliana protein match is: TSO1 (CHINESE FOR  UGLY ); transcription factor (TAIR:AT3G22780.1); Has 855 Blast hits to 552 proteins in 73 species: Archae - 0; Bacteria - 4; Metazoa - 314; Fungi - 6; Plants - 203; Viruses - 0; Other Eukaryotes - 328 (source: NCBI BLink).  protein_id AT4G14770.1p  transcript_id AT4G14770.1  protein_id AT4G14770.1p  transcript_id AT4G14770.1  
At4g14780	chr4:008492989	0.0	W/8492989-8493247,8493332-8493453,8493521-8493717,8493797-8493971,8494046-8494180,8494274-8494480	AT4G14780.1  CDS  gene_syn DL3430W, FCAALL.308  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), ATMRK serine/threonine protein kinase-like (InterPro:IPR015783), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT3G22750.1); Has 94189 Blast hits to 93089 proteins in 3475 species: Archae - 71; Bacteria - 8027; Metazoa - 41718; Fungi - 7876; Plants - 19036; Viruses - 588; Other Eukaryotes - 16873 (source: NCBI BLink).  protein_id AT4G14780.1p  transcript_id AT4G14780.1  protein_id AT4G14780.1p  transcript_id AT4G14780.1  
At4g14785	chr4:008495173	0.0	W/8495173-8495239,8495400-8495620	AT4G14785.1  CDS  gene_syn SCR-Like 23, SCRL23  gene SCRL23  function Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165||IEA  product SCRL23 (SCR-Like 23)  note SCR-Like 23 (SCRL23); INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility response (InterPro:IPR010682); BEST Arabidopsis thaliana protein match is: SCRL22 (SCR-Like 22) (TAIR:AT4G33465.1); Has 15 Blast hits to 15 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G14785.1p  transcript_id AT4G14785.1  protein_id AT4G14785.1p  transcript_id AT4G14785.1  
At4g14790	chr4:008499766	0.0	C/8499766-8499829,8499363-8499522,8499098-8499219,8498829-8499019,8498606-8498746,8498364-8498486,8498101-8498178,8497843-8498011,8497648-8497760,8497483-8497563,8497334-8497399,8497186-8497250,8497038-8497083,8496816-8496932,8496524-8496615,8496351-8496438	AT4G14790.1  CDS  gene_syn ATSUV3, DL3435C, EDA15, FCAALL.309, embryo sac development arrest 15  gene ATSUV3  function encodes a nuclear-encoded DExH box RNA helicase, which is localized to mitochondria and whose in vitro ATPase activity is stimulated with mitochondrial RNA.  go_component mitochondrion|GO:0005739|10570936|IDA  go_process pollen development|GO:0009555|19237690|IMP  go_process megagametogenesis|GO:0009561|15634699|IMP  go_process RNA metabolic process|GO:0016070|10570936|IDA  go_function ATP-dependent RNA helicase activity|GO:0004004|10570936|IDA  product ATSUV3; ATP-dependent RNA helicase  note ATSUV3; FUNCTIONS IN: ATP-dependent RNA helicase activity; INVOLVED IN: megagametogenesis, RNA metabolic process, pollen development; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, C-terminal (InterPro:IPR001650); BEST Arabidopsis thaliana protein match is: ATP-dependent RNA helicase, mitochondrial, putative (TAIR:AT5G39840.1); Has 2878 Blast hits to 2857 proteins in 388 species: Archae - 9; Bacteria - 479; Metazoa - 242; Fungi - 230; Plants - 44; Viruses - 17; Other Eukaryotes - 1857 (source: NCBI BLink).  protein_id AT4G14790.1p  transcript_id AT4G14790.1  protein_id AT4G14790.1p  transcript_id AT4G14790.1  
At4g14800	chr4:008500398	0.0	W/8500398-8500555,8500647-8500770,8501741-8502058	AT4G14800.1  CDS  gene_syn 20S PROTEASOME BETA SUBUNIT 2, 20S PROTEASOME BETA SUBUNIT PBD2, DL3440W, FCAALL.135, PBD2  gene PBD2  function Encodes 20S proteasome beta subunit PBD2 (PBD2).  go_component vacuole|GO:0005773|15215502|IDA  go_function threonine-type endopeptidase activity|GO:0004298||IEA  go_component proteasome core complex|GO:0005839|9373170|TAS  go_component proteasome core complex|GO:0005839|9611183|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_function peptidase activity|GO:0008233||ISS  product PBD2 (20S PROTEASOME BETA SUBUNIT 2); peptidase/ threonine-type endopeptidase  note 20S PROTEASOME BETA SUBUNIT 2 (PBD2); FUNCTIONS IN: peptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: PBD1 (20S PROTEASOME BETA SUBUNIT D1); peptidase/ threonine-type endopeptidase (TAIR:AT3G22630.1); Has 2480 Blast hits to 2480 proteins in 300 species: Archae - 246; Bacteria - 20; Metazoa - 862; Fungi - 601; Plants - 330; Viruses - 0; Other Eukaryotes - 421 (source: NCBI BLink).  protein_id AT4G14800.1p  transcript_id AT4G14800.1  protein_id AT4G14800.1p  transcript_id AT4G14800.1  
At4g14805	chr4:008502821	0.0	C/8502821-8503199,8502678-8502734,8502374-8502597	AT4G14805.1  CDS  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product protease inhibitor/seed storage/lipid transfer protein (LTP)-related  note protease inhibitor/seed storage/lipid transfer protein (LTP)-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT3G43720.2); Has 119 Blast hits to 119 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 111; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G14805.1p  transcript_id AT4G14805.1  protein_id AT4G14805.1p  transcript_id AT4G14805.1  
At4g14811	chr4:008504141	0.0	C/8504141-8504314	AT4G14811.1  miRNA  gene_syn MICRORNA780A, MIR780A  gene MIR780A  function Encodes a microRNA that targets CHX18. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUUCUUCGUGAAUAUCUGGCA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR780A (MICRORNA780A); miRNA  transcript_id AT4G14811.1  
At4g14810	chr4:008504145	0.0	W/8504145-8504240,8504345-8504509	AT4G14810.1  CDS  gene_syn DL3445W, FCAALL.327  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 9 Blast hits to 9 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G14810.1p  transcript_id AT4G14810.1  protein_id AT4G14810.1p  transcript_id AT4G14810.1  
At4g14815	chr4:008505122	0.0	W/8505122-8505434,8505519-8505545,8505630-8505760	AT4G14815.1  CDS  go_process lipid transport|GO:0006869||IEA  go_function lipid binding|GO:0008289||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to membrane; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT3G22600.1); Has 452 Blast hits to 448 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 452; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G14815.1p  transcript_id AT4G14815.1  protein_id AT4G14815.1p  transcript_id AT4G14815.1  
At4g14819	chr4:008507365	0.0	W/8507365-8507679	AT4G14819.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1677, plant (InterPro:IPR012876); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22540.1); Has 130 Blast hits to 129 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 130; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G14819.1p  transcript_id AT4G14819.1  protein_id AT4G14819.1p  transcript_id AT4G14819.1  
At4g14820	chr4:008509482	0.0	C/8509482-8510038,8507794-8509405	AT4G14820.1  CDS  gene_syn DL3450C, FCAALL.330  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G29760.1); Has 15001 Blast hits to 5389 proteins in 172 species: Archae - 0; Bacteria - 4; Metazoa - 61; Fungi - 92; Plants - 14454; Viruses - 0; Other Eukaryotes - 390 (source: NCBI BLink).  protein_id AT4G14820.1p  transcript_id AT4G14820.1  protein_id AT4G14820.1p  transcript_id AT4G14820.1  
At4g14830	chr4:008510983	0.0	W/8510983-8511441	AT4G14830.1  CDS  gene_syn DL3455W, FCAALL.332  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22530.1); Has 37 Blast hits to 37 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G14830.1p  transcript_id AT4G14830.1  protein_id AT4G14830.1p  transcript_id AT4G14830.1  
At4g14840	chr4:008513495	0.0	C/8513495-8513532,8512833-8513296,8511587-8512752	AT4G14840.1  CDS  gene_syn DL3460C, FCAALL.333  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22520.1); Has 1350 Blast hits to 1200 proteins in 204 species: Archae - 9; Bacteria - 99; Metazoa - 566; Fungi - 111; Plants - 49; Viruses - 5; Other Eukaryotes - 511 (source: NCBI BLink).  protein_id AT4G14840.1p  transcript_id AT4G14840.1  protein_id AT4G14840.1p  transcript_id AT4G14840.1  
At4g14850	chr4:008513947	0.0	W/8513947-8515535,8515810-8516275	AT4G14850.1  CDS  gene_syn DL3465W, FCAALL.335, LOI1, lovastatin insensitive 1  gene LOI1  function Encodes a pentatricopeptide (PPR) protein that binds single-stranded RNA. The N-terminal portion of the protein can localize to the mitochondria. Mutations in this gene make plants less sensitive to inhibitors of the MEP and MVA pathways of isoprenoid biosynthesis and increase the activity of HMG CoA reductase.  go_component mitochondrion|GO:0005739|17213228|IDA  go_process sterol metabolic process|GO:0016125|17213228|IMP  go_process isopentenyl diphosphate biosynthetic process, mevalonate pathway|GO:0019287|17213228|IMP  go_process isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway|GO:0019288|17213228|IMP  go_process root development|GO:0048364|17213228|IMP  go_process regulation of catalytic activity|GO:0050790|17213228|IMP  go_function poly(rG) binding|GO:0034046|17213228|IDA  product LOI1 (lovastatin insensitive 1)  note lovastatin insensitive 1 (LOI1); FUNCTIONS IN: poly(rG) binding; INVOLVED IN: in 6 processes; LOCATED IN: mitochondrion; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G09950.1); Has 12456 Blast hits to 4855 proteins in 137 species: Archae - 0; Bacteria - 2; Metazoa - 54; Fungi - 18; Plants - 12174; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink).  protein_id AT4G14850.1p  transcript_id AT4G14850.1  protein_id AT4G14850.1p  transcript_id AT4G14850.1  
At4g14860	chr4:008516531	0.0	W/8516531-8517079	AT4G14860.1  CDS  gene_syn Arabidopsis thaliana ovate family protein 11, DL3470W, FCAALL.337, atofp11  gene atofp11  go_process biological_process|GO:0008150||ND  product atofp11 (Arabidopsis thaliana ovate family protein 11)  note Arabidopsis thaliana ovate family protein 11 (atofp11); INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623, plant (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16) (TAIR:AT2G32100.1); Has 135 Blast hits to 135 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G14860.1p  transcript_id AT4G14860.1  protein_id AT4G14860.1p  transcript_id AT4G14860.1  
At4g14870	chr4:008517248	0.0	W/8517248-8517781	AT4G14870.1  CDS  gene_syn DL3475W, FCAALL.408  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process protein secretion|GO:0009306||IEA  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||IEA  product P-P-bond-hydrolysis-driven protein transmembrane transporter  note P-P-bond-hydrolysis-driven protein transmembrane transporter; FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein secretion; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SecE subunit of protein translocation complex (InterPro:IPR005807); Has 24 Blast hits to 24 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G14870.1p  transcript_id AT4G14870.1  protein_id AT4G14870.1p  transcript_id AT4G14870.1  
At4g14880	chr4:008520018	0.0	C/8520018-8520050,8519821-8519930,8519676-8519733,8519332-8519595,8519103-8519240,8518954-8519005,8518745-8518824,8518578-8518637,8518410-8518490,8518209-8518301	AT4G14880.1  CDS  gene_syn ATCYS-3A, CYTACS1, DL3480C, FCAALL.34, O-ACETHYLSERINE SULFHYDRYLASE, O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1, O-ACETYLSERINE (THIOL)LYASE, OASA1  gene OASA1  function Encodes a cytosolic isoform of cytosolic O-acetylserine(thiol)lyase, a key enzyme in cysteine biosynthesis and for the fixation of inorganic sulfide. It catalyzes the formation of cysteine from O-acetylserine and inorganic sulfide. Gene expression is predominant in the root cortex and the xylem parenchyma. Gene expression is induced in leave, stems and roots by high salt and heavy metal stresses, mediated by ABA.  go_component nucleus|GO:0005634|14617066|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_component cytosol|GO:0005829|10940562|ISS  go_process cysteine biosynthetic process from serine|GO:0006535|10940562|TAS  go_process response to salt stress|GO:0009651|10480396|IEP  go_process response to metal ion|GO:0010038|10480396|IEP  go_process cysteine biosynthetic process|GO:0019344|18441224|IMP  go_process response to cadmium ion|GO:0046686|11121418|IDA  go_process response to cadmium ion|GO:0046686|11121418|IEP  go_process response to cadmium ion|GO:0046686|11121418|IMP  go_function cysteine synthase activity|GO:0004124|10940562|IDA  product OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1); cysteine synthase  note O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1 (OASA1); FUNCTIONS IN: cysteine synthase activity; INVOLVED IN: response to cadmium ion, cysteine biosynthetic process from serine, response to salt stress, cysteine biosynthetic process, response to metal ion; LOCATED IN: in 7 components; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (InterPro:IPR001216), Cysteine synthase A (InterPro:IPR005859), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Cysteine synthase K/M (InterPro:IPR005856); BEST Arabidopsis thaliana protein match is: OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C); ATP binding / cysteine synthase (TAIR:AT3G59760.3); Has 12857 Blast hits to 12841 proteins in 1480 species: Archae - 232; Bacteria - 7349; Metazoa - 316; Fungi - 418; Plants - 357; Viruses - 0; Other Eukaryotes - 4185 (source: NCBI BLink).  protein_id AT4G14880.1p  transcript_id AT4G14880.1  protein_id AT4G14880.1p  transcript_id AT4G14880.1  
At4g14880	chr4:008520018	0.0	C/8520018-8520050,8519821-8519930,8519676-8519733,8519332-8519595,8519103-8519240,8518954-8519005,8518745-8518824,8518578-8518637,8518410-8518490,8518209-8518301	AT4G14880.2  CDS  gene_syn ATCYS-3A, CYTACS1, DL3480C, FCAALL.34, O-ACETHYLSERINE SULFHYDRYLASE, O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1, O-ACETYLSERINE (THIOL)LYASE, OASA1  gene OASA1  function Encodes a cytosolic isoform of cytosolic O-acetylserine(thiol)lyase, a key enzyme in cysteine biosynthesis and for the fixation of inorganic sulfide. It catalyzes the formation of cysteine from O-acetylserine and inorganic sulfide. Gene expression is predominant in the root cortex and the xylem parenchyma. Gene expression is induced in leave, stems and roots by high salt and heavy metal stresses, mediated by ABA.  go_component nucleus|GO:0005634|14617066|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_component cytosol|GO:0005829|10940562|ISS  go_process cysteine biosynthetic process from serine|GO:0006535|10940562|TAS  go_process response to salt stress|GO:0009651|10480396|IEP  go_process response to metal ion|GO:0010038|10480396|IEP  go_process cysteine biosynthetic process|GO:0019344|18441224|IMP  go_process response to cadmium ion|GO:0046686|11121418|IDA  go_process response to cadmium ion|GO:0046686|11121418|IEP  go_process response to cadmium ion|GO:0046686|11121418|IMP  go_function cysteine synthase activity|GO:0004124|10940562|IDA  product OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1); cysteine synthase  note O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1 (OASA1); FUNCTIONS IN: cysteine synthase activity; INVOLVED IN: response to cadmium ion, cysteine biosynthetic process from serine, response to salt stress, cysteine biosynthetic process, response to metal ion; LOCATED IN: in 7 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (InterPro:IPR001216), Cysteine synthase A (InterPro:IPR005859), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Cysteine synthase K/M (InterPro:IPR005856); BEST Arabidopsis thaliana protein match is: OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C); ATP binding / cysteine synthase (TAIR:AT3G59760.3); Has 12857 Blast hits to 12841 proteins in 1480 species: Archae - 232; Bacteria - 7349; Metazoa - 316; Fungi - 418; Plants - 357; Viruses - 0; Other Eukaryotes - 4185 (source: NCBI BLink).  protein_id AT4G14880.2p  transcript_id AT4G14880.2  protein_id AT4G14880.2p  transcript_id AT4G14880.2  
At4g14890	chr4:008520887	0.0	W/8520887-8521351	AT4G14890.1  CDS  gene_syn DL3485W, FCAALL.7  go_component chloroplast|GO:0009507|18431481|IDA  go_process electron transport chain|GO:0022900||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function iron-sulfur cluster binding|GO:0051536||IEA  go_function 2 iron, 2 sulfur cluster binding|GO:0051537||IEA  go_function electron carrier activity|GO:0009055||ISS  product ferredoxin family protein  note ferredoxin family protein; FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding; INVOLVED IN: electron transport chain; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041), Ferredoxin [2Fe-2S], plant (InterPro:IPR010241), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: ATFD3 (ferredoxin 3); 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding (TAIR:AT2G27510.1); Has 3979 Blast hits to 3977 proteins in 721 species: Archae - 45; Bacteria - 2406; Metazoa - 8; Fungi - 2; Plants - 434; Viruses - 2; Other Eukaryotes - 1082 (source: NCBI BLink).  protein_id AT4G14890.1p  transcript_id AT4G14890.1  protein_id AT4G14890.1p  transcript_id AT4G14890.1  
At4g14900	chr4:008522701	0.0	C/8522701-8523607,8522377-8522552,8521759-8522274	AT4G14900.1  CDS  gene_syn DL3490C, FCAALL.410  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G22440.1); Has 1960 Blast hits to 1334 proteins in 129 species: Archae - 0; Bacteria - 8; Metazoa - 248; Fungi - 80; Plants - 1600; Viruses - 2; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT4G14900.1p  transcript_id AT4G14900.1  protein_id AT4G14900.1p  transcript_id AT4G14900.1  
At4g14905	chr4:008526879	0.0	C/8526879-8527997	AT4G14905.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G39240.1); Has 1209 Blast hits to 1171 proteins in 90 species: Archae - 0; Bacteria - 13; Metazoa - 536; Fungi - 5; Plants - 603; Viruses - 14; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT4G14905.1p  transcript_id AT4G14905.1  protein_id AT4G14905.1p  transcript_id AT4G14905.1  
At4g14905	chr4:008526879	0.0	C/8526879-8527997	AT4G14905.2  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G39240.1); Has 1209 Blast hits to 1171 proteins in 90 species: Archae - 0; Bacteria - 13; Metazoa - 536; Fungi - 5; Plants - 603; Viruses - 14; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT4G14905.2p  transcript_id AT4G14905.2  protein_id AT4G14905.2p  transcript_id AT4G14905.2  
At4g14910	chr4:008529883	0.0	C/8529883-8530105,8529673-8529794,8529402-8529506,8529209-8529301,8529027-8529101,8528869-8528931,8528507-8528752	AT4G14910.2  CDS  gene_syn DL3495C, FCAALL.36  go_component chloroplast|GO:0009507||IEA  go_process histidine biosynthetic process|GO:0000105||IEA  go_function imidazoleglycerol-phosphate dehydratase activity|GO:0004424||IEA  go_process histidine biosynthetic process|GO:0000105||ISS  go_function imidazoleglycerol-phosphate dehydratase activity|GO:0004424||ISS  product imidazoleglycerol-phosphate dehydratase, putative  note imidazoleglycerol-phosphate dehydratase, putative; FUNCTIONS IN: imidazoleglycerol-phosphate dehydratase activity; INVOLVED IN: histidine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Imidazole glycerol-phosphate dehydratase (InterPro:IPR000807); BEST Arabidopsis thaliana protein match is: IGPD; imidazoleglycerol-phosphate dehydratase (TAIR:AT3G22425.2); Has 4921 Blast hits to 4919 proteins in 1283 species: Archae - 135; Bacteria - 2311; Metazoa - 2; Fungi - 152; Plants - 61; Viruses - 0; Other Eukaryotes - 2260 (source: NCBI BLink).  protein_id AT4G14910.2p  transcript_id AT4G14910.2  protein_id AT4G14910.2p  transcript_id AT4G14910.2  
At4g14910	chr4:008529883	0.0	C/8529883-8530105,8529673-8529794,8529402-8529506,8529209-8529301,8529027-8529101,8528869-8528931,8528643-8528752,8528451-8528478	AT4G14910.1  CDS  gene_syn DL3495C, FCAALL.36  go_component chloroplast|GO:0009507||IEA  go_process histidine biosynthetic process|GO:0000105||IEA  go_function imidazoleglycerol-phosphate dehydratase activity|GO:0004424||IEA  go_process histidine biosynthetic process|GO:0000105||ISS  go_function imidazoleglycerol-phosphate dehydratase activity|GO:0004424||ISS  product imidazoleglycerol-phosphate dehydratase, putative  note imidazoleglycerol-phosphate dehydratase, putative; FUNCTIONS IN: imidazoleglycerol-phosphate dehydratase activity; INVOLVED IN: histidine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Imidazole glycerol-phosphate dehydratase (InterPro:IPR000807); BEST Arabidopsis thaliana protein match is: IGPD; imidazoleglycerol-phosphate dehydratase (TAIR:AT3G22425.2); Has 4925 Blast hits to 4923 proteins in 1283 species: Archae - 135; Bacteria - 2313; Metazoa - 2; Fungi - 152; Plants - 61; Viruses - 0; Other Eukaryotes - 2262 (source: NCBI BLink).  protein_id AT4G14910.1p  transcript_id AT4G14910.1  protein_id AT4G14910.1p  transcript_id AT4G14910.1  
At4g14920	chr4:008535249	0.0	C/8535249-8535842,8534362-8535203,8533698-8534307,8533300-8533461,8532529-8532732,8532299-8532480,8531998-8532097,8531696-8531903,8531157-8531587	AT4G14920.1  CDS  gene_syn DL3500C, FCAALL.143  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product DNA binding / protein binding / zinc ion binding  note DNA binding / protein binding / zinc ion binding; FUNCTIONS IN: protein binding, DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT1G05380.2); Has 1106 Blast hits to 1009 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 826; Fungi - 48; Plants - 188; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT4G14920.1p  transcript_id AT4G14920.1  protein_id AT4G14920.1p  transcript_id AT4G14920.1  
At4g14930	chr4:008538831	0.0	W/8538831-8538982,8539262-8539356,8539478-8539542,8539766-8539809,8540145-8540228,8540419-8540572,8540671-8540853,8540946-8541002,8541092-8541205	AT4G14930.1  CDS  gene_syn DL3505W, FCAALL.200  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function acid phosphatase activity|GO:0003993||ISS  product acid phosphatase survival protein SurE, putative  note acid phosphatase survival protein SurE, putative; FUNCTIONS IN: hydrolase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Survival protein SurE-like phosphatase/nucleotidase (InterPro:IPR002828); BEST Arabidopsis thaliana protein match is: acid phosphatase survival protein SurE, putative (TAIR:AT1G72880.2); Has 3267 Blast hits to 3265 proteins in 996 species: Archae - 138; Bacteria - 2045; Metazoa - 0; Fungi - 97; Plants - 36; Viruses - 0; Other Eukaryotes - 951 (source: NCBI BLink).  protein_id AT4G14930.1p  transcript_id AT4G14930.1  protein_id AT4G14930.1p  transcript_id AT4G14930.1  
At4g14940	chr4:008541879	0.0	W/8541879-8543009,8543093-8543206,8543481-8544031,8544148-8544304	AT4G14940.1  CDS  gene_syn ARABIDOPSIS THALIANA AMINE OXIDASE 1, ATAO1, DL3510W, FCAALL.145  gene ATAO1  function atao1 gene of Arabidopsis thaliana encodes an extracellular copper amine oxidase expressed during early stages of vascular tissue development.  go_component cell wall|GO:0005618|15593128|IDA  go_process secondary cell wall biogenesis|GO:0009834||TAS  go_function copper ion binding|GO:0005507||ISS  go_function amine oxidase activity|GO:0008131|9681017|IDA  product ATAO1 (ARABIDOPSIS THALIANA AMINE OXIDASE 1); amine oxidase/ copper ion binding  note ARABIDOPSIS THALIANA AMINE OXIDASE 1 (ATAO1); FUNCTIONS IN: amine oxidase activity, copper ion binding; INVOLVED IN: secondary cell wall biogenesis; LOCATED IN: cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal region (InterPro:IPR016182), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: amine oxidase/ copper ion binding / quinone binding (TAIR:AT1G31690.1); Has 1081 Blast hits to 1079 proteins in 164 species: Archae - 4; Bacteria - 240; Metazoa - 219; Fungi - 287; Plants - 132; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink).  protein_id AT4G14940.1p  transcript_id AT4G14940.1  protein_id AT4G14940.1p  transcript_id AT4G14940.1  
At4g14950	chr4:008545517	0.0	W/8545517-8545565,8545864-8546075,8546159-8546237,8546321-8546620,8546731-8546888,8547034-8547150,8547247-8547426,8547567-8547722	AT4G14950.1  CDS  gene_syn DL3515W, FCAALL.221  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05360.1); Has 269 Blast hits to 264 proteins in 96 species: Archae - 0; Bacteria - 13; Metazoa - 155; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT4G14950.1p  transcript_id AT4G14950.1  protein_id AT4G14950.1p  transcript_id AT4G14950.1  
At4g14950	chr4:008545551	0.0	W/8545551-8545569,8545864-8546075,8546159-8546237,8546321-8546620,8546731-8546888,8547034-8547150,8547247-8547426,8547564-8547566	AT4G14950.2  CDS  gene_syn DL3515W, FCAALL.221  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05360.1); Has 269 Blast hits to 264 proteins in 96 species: Archae - 0; Bacteria - 13; Metazoa - 155; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT4G14950.2p  transcript_id AT4G14950.2  protein_id AT4G14950.2p  transcript_id AT4G14950.2  
At4g14950	chr4:008545551	0.0	W/8545551-8545569,8545864-8546075,8546159-8546237,8546321-8546620,8546731-8546888,8547034-8547150,8547247-8547426,8547567-8547722	AT4G14950.3  CDS  gene_syn DL3515W, FCAALL.221  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05360.1); Has 269 Blast hits to 264 proteins in 96 species: Archae - 0; Bacteria - 13; Metazoa - 155; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT4G14950.3p  transcript_id AT4G14950.3  protein_id AT4G14950.3p  transcript_id AT4G14950.3  
At4g14960	chr4:008550227	0.0	C/8550227-8550319,8548769-8550028	AT4G14960.2  CDS  gene_syn TUA6  gene TUA6  function Encodes an alpha-tubulin isoform required for right handed helical growth.  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component vacuole|GO:0005773|14760709|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component cytosol|GO:0005829|18433157|IDA  go_component microtubule|GO:0005874|12609049|IDA  go_component tubulin complex|GO:0045298|12609049|IDA  go_process microtubule cytoskeleton organization|GO:0000226|15998306|IMP  go_function structural constituent of cytoskeleton|GO:0005200|1498608|ISS  product TUA6; structural constituent of cytoskeleton  note TUA6; FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: response to salt stress, microtubule cytoskeleton organization; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Alpha tubulin (InterPro:IPR002452), Tubulin (InterPro:IPR000217), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, GTPase (InterPro:IPR003008), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316), Tubulin/FtsZ, C-terminal (InterPro:IPR008280); BEST Arabidopsis thaliana protein match is: TUA2; structural constituent of cytoskeleton (TAIR:AT1G50010.1); Has 16434 Blast hits to 16360 proteins in 3503 species: Archae - 0; Bacteria - 25; Metazoa - 3563; Fungi - 9064; Plants - 1010; Viruses - 0; Other Eukaryotes - 2772 (source: NCBI BLink).  protein_id AT4G14960.2p  transcript_id AT4G14960.2  protein_id AT4G14960.2p  transcript_id AT4G14960.2  
At4g14960	chr4:008550227	0.0	C/8550227-8550319,8548964-8550028,8548753-8548878	AT4G14960.1  CDS  gene_syn TUA6  gene TUA6  function Encodes an alpha-tubulin isoform required for right handed helical growth.  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component vacuole|GO:0005773|14760709|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component cytosol|GO:0005829|18433157|IDA  go_component microtubule|GO:0005874|12609049|IDA  go_component tubulin complex|GO:0045298|12609049|IDA  go_process microtubule cytoskeleton organization|GO:0000226|15998306|IMP  go_function structural constituent of cytoskeleton|GO:0005200|1498608|ISS  product TUA6; structural constituent of cytoskeleton  note TUA6; FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: response to salt stress, microtubule cytoskeleton organization; LOCATED IN: in 8 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Alpha tubulin (InterPro:IPR002452), Tubulin, conserved site (InterPro:IPR017975), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase (InterPro:IPR003008), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: TUA2; structural constituent of cytoskeleton (TAIR:AT1G50010.1); Has 16248 Blast hits to 16194 proteins in 3491 species: Archae - 0; Bacteria - 22; Metazoa - 3453; Fungi - 9047; Plants - 975; Viruses - 0; Other Eukaryotes - 2751 (source: NCBI BLink).  protein_id AT4G14960.1p  transcript_id AT4G14960.1  protein_id AT4G14960.1p  transcript_id AT4G14960.1  
At4g14965	chr4:008551356	0.0	W/8551356-8551463,8551719-8551804,8551885-8551956,8552075-8552112,8552458-8552501,8552723-8552769,8552924-8553098,8553201-8553368	AT4G14965.1  CDS  gene_syn Arabidopsis thaliana membrane-associated progesterone binding protein 4, AtMAPR4  gene AtMAPR4  go_component endomembrane system|GO:0012505||IEA  go_function heme binding|GO:0020037||IEA  product AtMAPR4 (Arabidopsis thaliana membrane-associated progesterone binding protein 4); heme binding  note Arabidopsis thaliana membrane-associated progesterone binding protein 4 (AtMAPR4); FUNCTIONS IN: heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: AtMAPR2 (Arabidopsis thaliana membrane-associated progesterone binding protein 2); heme binding (TAIR:AT2G24940.1); Has 737 Blast hits to 737 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 352; Fungi - 216; Plants - 120; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT4G14965.1p  transcript_id AT4G14965.1  protein_id AT4G14965.1p  transcript_id AT4G14965.1  
At4g14970	chr4:008553854	0.0	W/8553854-8554185,8554270-8554693,8554782-8555033,8555107-8555319,8555414-8555545,8555632-8555776,8555854-8555900,8555969-8556070,8556152-8556259,8556372-8556514,8556618-8556712,8556800-8556878,8556972-8557020,8557101-8557181,8557481-8557576,8557657-8557760,8557898-8558351,8558585-8558626,8558716-8558920,8559003-8559136,8559309-8559528,8559579-8559856,8559902-8559997,8560242-8560340,8560431-8560463,8560574-8560702,8560802-8560862,8560969-8561024,8561256-8561376,8561525-8561664	AT4G14970.1  CDS  gene_syn DL3525W, FCAALL.148  go_component chloroplast|GO:0009507|15028209|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; Has 167 Blast hits to 128 proteins in 50 species: Archae - 0; Bacteria - 2; Metazoa - 126; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT4G14970.1p  transcript_id AT4G14970.1  protein_id AT4G14970.1p  transcript_id AT4G14970.1  
At4g14980	chr4:008561970	0.0	C/8561970-8563607	AT4G14980.1  CDS  gene_syn DL3531C, FCAALL.150  go_process intracellular signaling cascade|GO:0007242||IEA  product unknown protein  note INVOLVED IN: intracellular signaling cascade; EXPRESSED IN: shoot apex, root, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT5G54050.1); Has 1104 Blast hits to 501 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 8; Plants - 1051; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT4G14980.1p  transcript_id AT4G14980.1  protein_id AT4G14980.1p  transcript_id AT4G14980.1  
At4g14990	chr4:008569460	0.0	C/8569460-8569511,8568918-8569063,8568767-8568823,8568516-8568591,8566259-8568291	AT4G14990.1  CDS  gene_syn DL3535C, FCAALL.26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22270.1); Has 248 Blast hits to 216 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 18; Plants - 55; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT4G14990.1p  transcript_id AT4G14990.1  protein_id AT4G14990.1p  transcript_id AT4G14990.1  
At4g15000	chr4:008571896	0.0	W/8571896-8572265,8572362-8572387	AT4G15000.2  CDS  gene_syn DL3545W, FCAALL.99  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component intracellular|GO:0005622||ISS  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L27 (RPL27C)  note 60S ribosomal protein L27 (RPL27C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, ribosome, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L27e (InterPro:IPR001141); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L27 (RPL27B) (TAIR:AT3G22230.1); Has 599 Blast hits to 599 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 290; Fungi - 100; Plants - 95; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).  protein_id AT4G15000.2p  transcript_id AT4G15000.2  protein_id AT4G15000.2p  transcript_id AT4G15000.2  
At4g15000	chr4:008571896	0.0	W/8571896-8572303	AT4G15000.1  CDS  gene_syn DL3545W, FCAALL.99  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component intracellular|GO:0005622||ISS  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L27 (RPL27C)  note 60S ribosomal protein L27 (RPL27C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L27e, conserved site (InterPro:IPR018262), Ribosomal protein L27e (InterPro:IPR001141); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L27 (RPL27B) (TAIR:AT3G22230.1); Has 603 Blast hits to 603 proteins in 228 species: Archae - 0; Bacteria - 0; Metazoa - 292; Fungi - 102; Plants - 95; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).  protein_id AT4G15000.1p  transcript_id AT4G15000.1  protein_id AT4G15000.1p  transcript_id AT4G15000.1  
At4g15010	chr4:008574748	0.0	C/8574748-8574864,8574592-8574667,8574419-8574514,8573645-8574161,8573414-8573549,8573125-8573319	AT4G15010.1  CDS  gene_syn DL3547C, FCAALL.86  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function binding|GO:0005488||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: endomembrane system, mitochondrial inner membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); Has 3824 Blast hits to 3539 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 1741; Fungi - 1051; Plants - 775; Viruses - 0; Other Eukaryotes - 257 (source: NCBI BLink).  protein_id AT4G15010.1p  transcript_id AT4G15010.1  protein_id AT4G15010.1p  transcript_id AT4G15010.1  
At4g15010	chr4:008574748	0.0	C/8574748-8574864,8574592-8574667,8574419-8574514,8573645-8574161,8573414-8573549,8573125-8573319	AT4G15010.2  CDS  gene_syn DL3547C, FCAALL.86  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function binding|GO:0005488||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: endomembrane system, mitochondrial inner membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); Has 3824 Blast hits to 3539 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 1741; Fungi - 1051; Plants - 775; Viruses - 0; Other Eukaryotes - 257 (source: NCBI BLink).  protein_id AT4G15010.2p  transcript_id AT4G15010.2  protein_id AT4G15010.2p  transcript_id AT4G15010.2  
At4g15010	chr4:008574748	0.0	C/8574748-8574864,8574592-8574667,8574419-8574514,8573645-8574161,8573414-8573549,8573125-8573319	AT4G15010.3  CDS  gene_syn DL3547C, FCAALL.86  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function binding|GO:0005488||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: endomembrane system, mitochondrial inner membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); Has 3824 Blast hits to 3539 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 1741; Fungi - 1051; Plants - 775; Viruses - 0; Other Eukaryotes - 257 (source: NCBI BLink).  protein_id AT4G15010.3p  transcript_id AT4G15010.3  protein_id AT4G15010.3p  transcript_id AT4G15010.3  
At4g15020	chr4:008575806	0.0	W/8575806-8577630,8577717-8577921,8578012-8578199,8578284-8578372	AT4G15020.1  CDS  gene_syn DL3551W, FCAALL.174  go_function DNA binding|GO:0003677||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product DNA binding / protein dimerization  note DNA binding / protein dimerization; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021), Protein of unknown function DUF1544 (InterPro:IPR011523); BEST Arabidopsis thaliana protein match is: hAT dimerisation domain-containing protein (TAIR:AT3G22220.2); Has 326 Blast hits to 324 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 323; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G15020.1p  transcript_id AT4G15020.1  protein_id AT4G15020.1p  transcript_id AT4G15020.1  
At4g15020	chr4:008575806	0.0	W/8575806-8577630,8577717-8577921,8578012-8578199,8578284-8578372	AT4G15020.2  CDS  gene_syn DL3551W, FCAALL.174  go_function DNA binding|GO:0003677||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product DNA binding / protein dimerization  note DNA binding / protein dimerization; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021), Protein of unknown function DUF1544 (InterPro:IPR011523); BEST Arabidopsis thaliana protein match is: hAT dimerisation domain-containing protein (TAIR:AT3G22220.2).  protein_id AT4G15020.2p  transcript_id AT4G15020.2  protein_id AT4G15020.2p  transcript_id AT4G15020.2  
At4g15030	chr4:008578989	0.0	W/8578989-8579044,8579132-8579211,8579540-8579621,8579790-8579873,8579982-8580021,8580107-8580152,8580243-8580301,8580382-8580449,8580558-8580641,8580734-8580832,8580925-8580974,8581080-8581180	AT4G15030.2  CDS  gene_syn DL3556W, FCAALL.175  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages.  protein_id AT4G15030.2p  transcript_id AT4G15030.2  protein_id AT4G15030.2p  transcript_id AT4G15030.2  
At4g15030	chr4:008578989	0.0	W/8578989-8579044,8579144-8579211,8579540-8579621,8579790-8579873,8579982-8580021,8580107-8580152,8580243-8580301,8580382-8580449,8580558-8580641,8580734-8580832,8580925-8580974,8581080-8581180	AT4G15030.1  CDS  gene_syn DL3556W, FCAALL.175  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 20980 Blast hits to 9172 proteins in 424 species: Archae - 39; Bacteria - 484; Metazoa - 10225; Fungi - 1768; Plants - 1092; Viruses - 133; Other Eukaryotes - 7239 (source: NCBI BLink).  protein_id AT4G15030.1p  transcript_id AT4G15030.1  protein_id AT4G15030.1p  transcript_id AT4G15030.1  
At4g15040	chr4:008584043	0.0	C/8584043-8584122,8583872-8583963,8583547-8583793,8582961-8583444,8582782-8582876,8582473-8582682,8582257-8582400,8581989-8582173,8581373-8581899	AT4G15040.1  CDS  gene_syn DL3561C, FCAALL.176  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product identical protein binding / serine-type endopeptidase  note identical protein binding / serine-type endopeptidase; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, N-terminal protein myristoylation, negative regulation of catalytic activity; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT5G59100.1); Has 2666 Blast hits to 2469 proteins in 443 species: Archae - 42; Bacteria - 1558; Metazoa - 25; Fungi - 60; Plants - 842; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).  protein_id AT4G15040.1p  transcript_id AT4G15040.1  protein_id AT4G15040.1p  transcript_id AT4G15040.1  
At4g15050	chr4:008590184	0.0	C/8590184-8590345,8589996-8590088,8589689-8589907,8589442-8589594,8589250-8589303,8589019-8589162,8588548-8588913	AT4G15050.1  CDS  gene_syn DL3570C, FCAALL.178  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10190.1); Has 370 Blast hits to 351 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 364; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G15050.1p  transcript_id AT4G15050.1  protein_id AT4G15050.1p  transcript_id AT4G15050.1  
At4g15053	chr4:008593627	0.0	C/8593627-8593800,8593422-8593514,8593098-8593325,8592857-8593009,8592669-8592722,8592431-8592574,8591930-8592295	AT4G15053.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10190.1); Has 386 Blast hits to 365 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 8; Plants - 375; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G15053.1p  transcript_id AT4G15053.1  protein_id AT4G15053.1p  transcript_id AT4G15053.1  
At4g15056	chr4:008597257	0.0	C/8597257-8597430,8597070-8597162,8596886-8596975,8596475-8596624,8595985-8596155	AT4G15056.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G15053.1); Has 201 Blast hits to 195 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 201; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G15056.1p  transcript_id AT4G15056.1  protein_id AT4G15056.1p  transcript_id AT4G15056.1  
At4g15060	chr4:008599035	0.0	W/8599035-8599151,8599239-8599379,8599462-8599711,8600382-8601265,8601352-8601492,8601576-8601761	AT4G15060.1  CDS  gene_syn DL3575W, FCAALL.180  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box protein-related  note F-box protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, F mature embryo stage, 4 leaf senescence stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G55660.1); Has 1545 Blast hits to 1318 proteins in 16 species: Archae - 0; Bacteria - 4; Metazoa - 6; Fungi - 4; Plants - 1531; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G15060.1p  transcript_id AT4G15060.1  protein_id AT4G15060.1p  transcript_id AT4G15060.1  
At4g15061	chr4:008602048	0.0	C/8602048-8602182	AT4G15061.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G15061.1p  transcript_id AT4G15061.1  protein_id AT4G15061.1p  transcript_id AT4G15061.1  
At4g15070	chr4:008604680	0.0	C/8604680-8606141,8603424-8604631	AT4G15070.1  CDS  gene_syn DL3580C, FCAALL.181  go_process intracellular signaling cascade|GO:0007242||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular signaling cascade; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT5G48320.1); Has 1193 Blast hits to 498 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 0; Plants - 1169; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT4G15070.1p  transcript_id AT4G15070.1  protein_id AT4G15070.1p  transcript_id AT4G15070.1  
At4g15075	chr4:008607813	0.0	W/8607813-8607932,8608046-8608153,8608241-8608519	AT4G15075.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box protein-related (TAIR:AT4G15060.1); Has 187 Blast hits to 183 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 187; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G15075.1p  transcript_id AT4G15075.1  protein_id AT4G15075.1p  transcript_id AT4G15075.1  
At4g15080	chr4:008612185	0.0	C/8612185-8612229,8611986-8612099,8611482-8611868,8611334-8611402,8611161-8611232,8610952-8611080,8610794-8610874,8610254-8610454,8609085-8610143	AT4G15080.1  CDS  gene_syn DL3585C, FCAALL.183  go_component plasma membrane|GO:0005886|17317660|IDA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc finger (DHHC type) family protein  note zinc finger (DHHC type) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: zinc finger (DHHC type) family protein (TAIR:AT3G22180.1); Has 3651 Blast hits to 3622 proteins in 181 species: Archae - 0; Bacteria - 2; Metazoa - 1853; Fungi - 432; Plants - 402; Viruses - 0; Other Eukaryotes - 962 (source: NCBI BLink).  protein_id AT4G15080.1p  transcript_id AT4G15080.1  protein_id AT4G15080.1p  transcript_id AT4G15080.1  
At4g15090	chr4:008614806	0.0	W/8614806-8616929,8617026-8617079,8617200-8617268,8617363-8617425,8617518-8617589,8617678-8617725,8617817-8617870	AT4G15090.1  CDS  gene_syn DL3590W, FAR-RED IMPAIRED RESPONSE 1, FAR1, FCAALL.134  gene FAR1  function Encodes a nuclear localized protein involved in far red light response signaling. Loss of function mutants are defective in far red light responses. Interacts with homologous gene FHY3.  go_component nucleus|GO:0005634|10444599|IDA  go_component nucleus|GO:0005634|18715961|IDA  go_process response to red or far red light|GO:0009639|10444599|IMP  go_process red or far red light signaling pathway|GO:0010017|10444599|IMP  go_process red or far red light signaling pathway|GO:0010017|18715961|IMP  go_process far red light signaling pathway|GO:0010018|10444599|IMP  go_process response to far red light|GO:0010218|18033885|IEP  go_process response to far red light|GO:0010218|18715961|IMP  go_function transcription factor activity|GO:0003700|18033885|IDA  go_function transcription activator activity|GO:0016563|18715961|IDA  product FAR1 (FAR-RED IMPAIRED RESPONSE 1); transcription activator/ transcription factor  note FAR-RED IMPAIRED RESPONSE 1 (FAR1); FUNCTIONS IN: transcription factor activity, transcription activator activity; INVOLVED IN: red or far red light signaling pathway, response to red or far red light, far red light signaling pathway, response to far red light; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FHY3 (FAR-RED ELONGATED HYPOCOTYLS 3); transcription activator/ transcription factor (TAIR:AT3G22170.2); Has 842 Blast hits to 794 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 86; Plants - 753; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G15090.1p  transcript_id AT4G15090.1  protein_id AT4G15090.1p  transcript_id AT4G15090.1  
At4g15093	chr4:008618454	0.0	W/8618454-8618690,8618827-8619206,8619280-8619472	AT4G15093.1  CDS  go_process cellular aromatic compound metabolic process|GO:0006725||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function ferrous iron binding|GO:0008198||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on single donors with incorporation of molecular oxygen|GO:0016701||IEA  go_component cellular_component|GO:0005575||ND  go_process cellular aromatic compound metabolic process|GO:0006725||ISS  go_function oxidoreductase activity|GO:0016491||ISS  product catalytic LigB subunit of aromatic ring-opening dioxygenase family  note catalytic LigB subunit of aromatic ring-opening dioxygenase family; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, ferrous iron binding, zinc ion binding, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen; INVOLVED IN: oxidation reduction, cellular aromatic compound metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Extradiol aromatic ring-opening dioxygenase, DODA type (InterPro:IPR014436), Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B (InterPro:IPR004183); Has 1178 Blast hits to 1178 proteins in 524 species: Archae - 20; Bacteria - 875; Metazoa - 2; Fungi - 120; Plants - 49; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).  protein_id AT4G15093.1p  transcript_id AT4G15093.1  protein_id AT4G15093.1p  transcript_id AT4G15093.1  
At4g15096	chr4:008620596	0.0	W/8620596-8622635	AT4G15096.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40955.1); Has 83 Blast hits to 83 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 16; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT4G15096.1p  transcript_id AT4G15096.1  protein_id AT4G15096.1p  transcript_id AT4G15096.1  
At4g15100	chr4:008626268	0.0	W/8626268-8626316,8626359-8626460,8626551-8626646,8627252-8627344,8627506-8627597,8627748-8628044,8628426-8628559,8628650-8628745,8629166-8629271,8629373-8629531	AT4G15100.1  CDS  gene_syn DL3595W, FCAALL.186, scpl30, serine carboxypeptidase-like 30  gene scpl30  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl30 (serine carboxypeptidase-like 30); serine-type carboxypeptidase  note serine carboxypeptidase-like 30 (scpl30); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl31 (serine carboxypeptidase-like 31); serine-type carboxypeptidase (TAIR:AT1G11080.1); Has 2297 Blast hits to 2253 proteins in 207 species: Archae - 0; Bacteria - 8; Metazoa - 556; Fungi - 557; Plants - 953; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).  protein_id AT4G15100.1p  transcript_id AT4G15100.1  protein_id AT4G15100.1p  transcript_id AT4G15100.1  
At4g15110	chr4:008632839	0.0	C/8632839-8632993,8632423-8632594,8632236-8632343,8632085-8632169,8631752-8631993,8631497-8631670,8631382-8631429,8631234-8631293,8631063-8631149,8630888-8630976,8630711-8630802,8630503-8630564,8630263-8630412,8629922-8630140	AT4G15110.1  CDS  gene_syn CYP97B3, CYTOCHROME P450, FAMILY 97, SUBFAMILY B, POLYPEPTIDE 3, DL3600C, FCAALL.208  gene CYP97B3  function member of CYP97B  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP97B3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP97B3; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3); carotene beta-ring hydroxylase/ oxygen binding (TAIR:AT1G31800.1); Has 22689 Blast hits to 22615 proteins in 1163 species: Archae - 21; Bacteria - 1888; Metazoa - 10214; Fungi - 4430; Plants - 5234; Viruses - 6; Other Eukaryotes - 896 (source: NCBI BLink).  protein_id AT4G15110.1p  transcript_id AT4G15110.1  protein_id AT4G15110.1p  transcript_id AT4G15110.1  
At4g15120	chr4:008634779	0.0	W/8634779-8635360	AT4G15120.1  CDS  gene_syn DL3605W, FCAALL.67  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product VQ motif-containing protein  note VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: male gametophyte, flower, root, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT3G22160.1); Has 167 Blast hits to 165 proteins in 26 species: Archae - 2; Bacteria - 0; Metazoa - 18; Fungi - 12; Plants - 102; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT4G15120.1p  transcript_id AT4G15120.1  protein_id AT4G15120.1p  transcript_id AT4G15120.1  
At4g15130	chr4:008637793	0.0	W/8637793-8637929,8638028-8638141,8638222-8638317,8638417-8638459,8638534-8638685,8638767-8638835,8638995-8639105,8639197-8639388	AT4G15130.1  CDS  gene_syn ATCCT2, CCT2, DL3610W, FCAALL.209, PHOSPHORYLCHOLINE CYTIDYLYLTRANSFERASE2  gene CCT2  go_function catalytic activity|GO:0003824||IEA  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_process biosynthetic process|GO:0009058||ISS  go_process response to cold|GO:0009409|15147879|IEP  go_function choline-phosphate cytidylyltransferase activity|GO:0004105||ISS  product catalytic/ choline-phosphate cytidylyltransferase/ nucleotidyltransferase  note PHOSPHORYLCHOLINE CYTIDYLYLTRANSFERASE2 (CCT2); FUNCTIONS IN: choline-phosphate cytidylyltransferase activity, catalytic activity, nucleotidyltransferase activity; INVOLVED IN: response to cold, biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cytidyltransferase-related (InterPro:IPR004821), Cytidylyltransferase (InterPro:IPR004820); BEST Arabidopsis thaliana protein match is: cholinephosphate cytidylyltransferase, putative / phosphorylcholine transferase, putative / CTP:phosphocholine cytidylyltransferase, putative (TAIR:AT2G32260.1); Has 1692 Blast hits to 1415 proteins in 340 species: Archae - 15; Bacteria - 386; Metazoa - 461; Fungi - 220; Plants - 130; Viruses - 0; Other Eukaryotes - 480 (source: NCBI BLink).  protein_id AT4G15130.1p  transcript_id AT4G15130.1  protein_id AT4G15130.1p  transcript_id AT4G15130.1  
At4g15140	chr4:008639866	0.0	C/8639866-8640261,8639683-8639784	AT4G15140.1  CDS  gene_syn DL3615C, FCAALL.236  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; Has 12 Blast hits to 12 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G15140.1p  transcript_id AT4G15140.1  protein_id AT4G15140.1p  transcript_id AT4G15140.1  
At4g15150	chr4:008642191	0.0	C/8642191-8642278,8641672-8641892	AT4G15150.1  CDS  gene_syn DL3620C, FCAALL.210  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 6687 Blast hits to 2854 proteins in 341 species: Archae - 2; Bacteria - 2660; Metazoa - 1699; Fungi - 208; Plants - 1516; Viruses - 151; Other Eukaryotes - 451 (source: NCBI BLink).  protein_id AT4G15150.1p  transcript_id AT4G15150.1  protein_id AT4G15150.1p  transcript_id AT4G15150.1  
At4g15160	chr4:008646192	0.0	W/8646192-8647014,8648832-8648932,8649539-8649691,8649872-8649907	AT4G15160.1  CDS  gene_syn DL3625W, FCAALL.211  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_function structural constituent of cell wall|GO:0005199||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product lipid binding / structural constituent of cell wall  note lipid binding / structural constituent of cell wall; FUNCTIONS IN: lipid binding, structural constituent of cell wall; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pistil-specific extensin-like protein (InterPro:IPR003882), Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: CWLP (CELL WALL-PLASMA MEMBRANE LINKER PROTEIN); lipid binding (TAIR:AT3G22120.1); Has 207458 Blast hits to 61871 proteins in 2090 species: Archae - 1040; Bacteria - 42435; Metazoa - 80812; Fungi - 22403; Plants - 24134; Viruses - 6081; Other Eukaryotes - 30553 (source: NCBI BLink).  protein_id AT4G15160.1p  transcript_id AT4G15160.1  protein_id AT4G15160.1p  transcript_id AT4G15160.1  
At4g15160	chr4:008646192	0.0	W/8646192-8647019	AT4G15160.2  CDS  gene_syn DL3625W, FCAALL.211  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_function structural constituent of cell wall|GO:0005199||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product lipid binding / structural constituent of cell wall  note lipid binding / structural constituent of cell wall; FUNCTIONS IN: structural constituent of cell wall, lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Pistil-specific extensin-like protein (InterPro:IPR003882), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: CWLP (CELL WALL-PLASMA MEMBRANE LINKER PROTEIN); lipid binding (TAIR:AT3G22120.1).  protein_id AT4G15160.2p  transcript_id AT4G15160.2  protein_id AT4G15160.2p  transcript_id AT4G15160.2  
At4g15180	chr4:008651999	0.0	W/8651999-8654011,8654086-8654326,8654486-8654542,8654995-8656077,8656297-8656667,8656747-8657280,8657359-8657459,8657952-8658891,8658983-8659054,8659209-8659319,8659396-8659496,8659836-8659935,8660055-8660150,8660368-8660535,8660622-8660747,8660907-8660960,8661084-8661331,8661415-8661523,8661608-8661910,8661999-8662178	AT4G15180.1  CDS  gene_syn ATXR3, DL3635W, FCAALL.214, SDG2, SET DOMAIN-CONTAINING PROTEIN 2  gene SDG2  product SDG2 (SET DOMAIN-CONTAINING PROTEIN 2)  note SET DOMAIN-CONTAINING PROTEIN 2 (SDG2); EXPRESSED IN: male gametophyte, cultured cell; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), GYF (InterPro:IPR003169); BEST Arabidopsis thaliana protein match is: EFS (EARLY FLOWERING IN SHORT DAYS); histone methyltransferase(H3-K36 specific) / histone methyltransferase(H3-K4 specific) (TAIR:AT1G77300.2); Has 4505 Blast hits to 4226 proteins in 328 species: Archae - 0; Bacteria - 240; Metazoa - 2391; Fungi - 402; Plants - 499; Viruses - 5; Other Eukaryotes - 968 (source: NCBI BLink).  protein_id AT4G15180.1p  transcript_id AT4G15180.1  protein_id AT4G15180.1p  transcript_id AT4G15180.1  
At4g15200	chr4:008665637	0.0	C/8665637-8665759,8665040-8665523,8664498-8664960,8664222-8664427,8664036-8664152,8663918-8663988,8663486-8663837	AT4G15200.1  CDS  gene_syn DL3645C, FCAALL.218  go_component endomembrane system|GO:0012505||IEA  go_process cellular component organization|GO:0016043||IEA  go_process actin cytoskeleton organization|GO:0030036||IEA  go_function actin binding|GO:0003779|12417149|ISS  go_function actin binding|GO:0003779|15256004|ISS  go_function actin binding|GO:0003779||ISS  product actin binding  note actin binding; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, male gametophyte, flower, pollen tube, seed; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Actin-binding FH2 and DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: Fh5 (FORMIN HOMOLOGY5); actin binding (TAIR:AT5G54650.2); Has 59336 Blast hits to 26074 proteins in 1259 species: Archae - 81; Bacteria - 10300; Metazoa - 19143; Fungi - 4772; Plants - 12112; Viruses - 2753; Other Eukaryotes - 10175 (source: NCBI BLink).  protein_id AT4G15200.1p  transcript_id AT4G15200.1  protein_id AT4G15200.1p  transcript_id AT4G15200.1  
At4g15210	chr4:008669295	0.0	C/8669295-8669357,8668317-8668718,8668055-8668219,8667709-8667972,8667280-8667489,8666970-8667209,8666734-8666886	AT4G15210.1  CDS  gene_syn ARABIDOPSIS THALIANA BETA-AMYLASE, AT-BETA-AMY, ATBETA-AMY, BAM5, BETA-AMYLASE 5, BMY1, DL3650C, FCAALL.97, RAM1, REDUCED BETA AMYLASE 1  gene BAM5  function cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems.  go_component endomembrane system|GO:0012505||IEA  go_process starch catabolic process|GO:0005983|7716246|IDA  go_process response to herbivore|GO:0080027|19251652|IEP  go_function beta-amylase activity|GO:0016161|7716246|IDA  go_function beta-amylase activity|GO:0016161||ISS  product BAM5 (BETA-AMYLASE 5); beta-amylase  note BETA-AMYLASE 5 (BAM5); FUNCTIONS IN: beta-amylase activity; INVOLVED IN: response to herbivore, starch catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14, conserved site (InterPro:IPR018238), Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 14B, plant (InterPro:IPR001371), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BAM6 (BETA-AMYLASE 6); beta-amylase/ catalytic/ cation binding (TAIR:AT2G32290.1); Has 524 Blast hits to 522 proteins in 120 species: Archae - 0; Bacteria - 70; Metazoa - 0; Fungi - 0; Plants - 394; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT4G15210.1p  transcript_id AT4G15210.1  protein_id AT4G15210.1p  transcript_id AT4G15210.1  
At4g15210	chr4:008669295	0.0	C/8669295-8669357,8668317-8668718,8668055-8668219,8667709-8667972,8667280-8667489,8667086-8667209,8666852-8666886	AT4G15210.2  CDS  gene_syn ARABIDOPSIS THALIANA BETA-AMYLASE, AT-BETA-AMY, ATBETA-AMY, BAM5, BETA-AMYLASE 5, BMY1, DL3650C, FCAALL.97, RAM1, REDUCED BETA AMYLASE 1  gene BAM5  function cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems.  go_component endomembrane system|GO:0012505||IEA  go_process starch catabolic process|GO:0005983|7716246|IDA  go_process response to herbivore|GO:0080027|19251652|IEP  go_function beta-amylase activity|GO:0016161|7716246|IDA  go_function beta-amylase activity|GO:0016161||ISS  product BAM5 (BETA-AMYLASE 5); beta-amylase  note ARABIDOPSIS THALIANA BETA-AMYLASE (ATBETA-AMY); FUNCTIONS IN: beta-amylase activity; INVOLVED IN: response to herbivore, starch catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14, conserved site (InterPro:IPR018238), Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 14B, plant (InterPro:IPR001371), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BAM6 (BETA-AMYLASE 6); beta-amylase/ catalytic/ cation binding (TAIR:AT2G32290.1); Has 523 Blast hits to 521 proteins in 120 species: Archae - 0; Bacteria - 70; Metazoa - 0; Fungi - 0; Plants - 393; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT4G15210.2p  transcript_id AT4G15210.2  protein_id AT4G15210.2p  transcript_id AT4G15210.2  
At4g15215	chr4:008672070	0.0	W/8672070-8672365,8672475-8672598,8672696-8672769,8672910-8672994,8673075-8673234,8673321-8673397,8673484-8673537,8673625-8673715,8673810-8674090,8674164-8674445,8674516-8674829,8674915-8675075,8675284-8675387,8675463-8675616,8675693-8675794,8675879-8675952,8676043-8676351,8676430-8676720,8676803-8676886,8676974-8677107,8677195-8677422,8677854-8678025,8678178-8678432,8678608-8678874	AT4G15215.1  CDS  gene_syn ATPDR13, PDR13, PLEIOTROPIC DRUG RESISTANCE 13  gene PDR13  go_component membrane|GO:0016020||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATPase activity|GO:0016887||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process multidrug transport|GO:0006855|16506311|ISS  product PDR13; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding  note PDR13; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: multidrug transport; LOCATED IN: membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: PDR2 (PLEIOTROPIC DRUG RESISTANCE 2); ATPase, coupled to transmembrane movement of substances (TAIR:AT4G15230.1); Has 217043 Blast hits to 173833 proteins in 2551 species: Archae - 4421; Bacteria - 154472; Metazoa - 7473; Fungi - 3996; Plants - 2980; Viruses - 4; Other Eukaryotes - 43697 (source: NCBI BLink).  protein_id AT4G15215.1p  transcript_id AT4G15215.1  protein_id AT4G15215.1p  transcript_id AT4G15215.1  
At4g15230	chr4:008680295	0.0	W/8680295-8680599,8680709-8680832,8680931-8681004,8681146-8681230,8681318-8681477,8681569-8681645,8681731-8681784,8681864-8681954,8682028-8682329,8682513-8682674,8682746-8683059,8683148-8683308,8683431-8683534,8683610-8683763,8684053-8684126,8684219-8684527,8684611-8684901,8684982-8685065,8685154-8685287,8685379-8685606,8685806-8685977,8686127-8686381,8686614-8686880	AT4G15230.1  CDS  gene_syn ATPDR2, DL3660W, FCAALL.241, PDR2, PLEIOTROPIC DRUG RESISTANCE 2  gene PDR2  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855|16506311|ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product PDR2 (PLEIOTROPIC DRUG RESISTANCE 2); ATPase, coupled to transmembrane movement of substances  note PLEIOTROPIC DRUG RESISTANCE 2 (PDR2); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: multidrug transport; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: PDR13; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (TAIR:AT4G15215.1); Has 231021 Blast hits to 172608 proteins in 2558 species: Archae - 4720; Bacteria - 164194; Metazoa - 8082; Fungi - 4632; Plants - 3163; Viruses - 6; Other Eukaryotes - 46224 (source: NCBI BLink).  protein_id AT4G15230.1p  transcript_id AT4G15230.1  protein_id AT4G15230.1p  transcript_id AT4G15230.1  
At4g15233	chr4:008688322	0.0	W/8688322-8688623,8688710-8688833,8688916-8688989,8689074-8689158,8689239-8689398,8689470-8689546,8689803-8689893,8689979-8690280,8690351-8690632,8690711-8691024,8691124-8691284,8691359-8691462,8691545-8691698,8692070-8692344,8692424-8692714,8692804-8692887,8692976-8693109,8693182-8693409,8693515-8693686,8693783-8694037,8694166-8694432	AT4G15233.1  CDS  go_component membrane|GO:0016020||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATPase activity|GO:0016887||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process biological_process|GO:0008150||ND  product ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding  note ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (TAIR:AT4G15236.1); Has 217726 Blast hits to 155583 proteins in 2442 species: Archae - 4663; Bacteria - 152501; Metazoa - 7947; Fungi - 5600; Plants - 3989; Viruses - 9; Other Eukaryotes - 43017 (source: NCBI BLink).  protein_id AT4G15233.1p  transcript_id AT4G15233.1  protein_id AT4G15233.1p  transcript_id AT4G15233.1  
At4g15236	chr4:008696683	0.0	W/8696683-8696972,8697053-8697176,8697266-8697339,8697412-8697496,8697568-8697727,8697809-8697885,8697992-8698045,8698133-8698223,8698309-8698610,8698681-8698962,8699042-8699355,8699438-8699598,8699673-8699776,8699861-8700014,8700096-8700250,8700352-8700660,8700748-8701038,8701116-8701199,8701284-8701417,8701487-8701714,8701819-8701990,8702078-8702332,8702461-8702727	AT4G15236.1  CDS  go_component membrane|GO:0016020||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATPase activity|GO:0016887||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  product ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding  note ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (TAIR:AT4G15233.1); Has 212367 Blast hits to 163191 proteins in 2540 species: Archae - 4392; Bacteria - 150907; Metazoa - 7694; Fungi - 4158; Plants - 2925; Viruses - 4; Other Eukaryotes - 42287 (source: NCBI BLink).  protein_id AT4G15236.1p  transcript_id AT4G15236.1  protein_id AT4G15236.1p  transcript_id AT4G15236.1  
At4g15240	chr4:008704557	0.0	C/8704557-8705378,8703725-8704258,8703518-8703628	AT4G15240.1  CDS  gene_syn DL3665C, FCAALL.244  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product fringe-related protein  note fringe-related protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: fringe-related protein (TAIR:AT1G05280.1); Has 368 Blast hits to 364 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 109; Plants - 125; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT4G15240.1p  transcript_id AT4G15240.1  protein_id AT4G15240.1p  transcript_id AT4G15240.1  
At4g15242	chr4:008705787	0.0	C/8705787-8706997	AT4G15242.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G15242.1  
At4g15248	chr4:008708881	0.0	W/8708881-8709234	AT4G15248.1  CDS  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: zinc finger (B-box type) family protein (TAIR:AT3G21890.1); Has 1060 Blast hits to 775 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1039; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT4G15248.1p  transcript_id AT4G15248.1  protein_id AT4G15248.1p  transcript_id AT4G15248.1  
At4g15250	chr4:008710618	0.0	C/8710618-8711106,8710149-8710531,8709942-8710062	AT4G15250.1  CDS  gene_syn DL3670C, FCAALL.247  go_component intracellular|GO:0005622||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (B-box type) family protein  note zinc finger (B-box type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding; LOCATED IN: intracellular; EXPRESSED IN: leaf whorl, petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: zinc finger (B-box type) family protein (TAIR:AT3G21880.1); Has 1532 Blast hits to 1247 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1447; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT4G15250.1p  transcript_id AT4G15250.1  protein_id AT4G15250.1p  transcript_id AT4G15250.1  
At4g15258	chr4:008713226	0.0	C/8713226-8713353	AT4G15258.1  snoRNA  gene_syn SMALL NUCLEOLAR RNA 37-2, SNOR37-2  gene SNOR37-2  function Encodes a C/D box snoRNA (snoR37-2). Gb: AJ505638  go_component box C/D snoRNP complex|GO:0031428||TAS  go_process rRNA methylation|GO:0031167||TAS  go_function molecular_function|GO:0003674||ND  product SNOR37-2 (SMALL NUCLEOLAR RNA 37-2); snoRNA  transcript_id AT4G15258.1  
At4g15260	chr4:008714065	0.0	W/8714065-8715144	AT4G15260.1  CDS  gene_syn DL3675W, FCAALL.250  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT71B5 (UDP-GLUCOSYL TRANSFERASE 71B5); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT4G15280.1); Has 4447 Blast hits to 4433 proteins in 286 species: Archae - 0; Bacteria - 156; Metazoa - 1629; Fungi - 12; Plants - 2597; Viruses - 18; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT4G15260.1p  transcript_id AT4G15260.1  protein_id AT4G15260.1p  transcript_id AT4G15260.1  
At4g15270	chr4:008717160	0.0	C/8717160-8717796,8716803-8717101	AT4G15270.1  CDS  gene_syn DL3680C, FCAALL.253  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glucosyltransferase-related  note glucosyltransferase-related; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT71B5 (UDP-GLUCOSYL TRANSFERASE 71B5); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT4G15280.1); Has 943 Blast hits to 616 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 943; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G15270.1p  transcript_id AT4G15270.1  protein_id AT4G15270.1p  transcript_id AT4G15270.1  
At4g15280	chr4:008719182	0.0	W/8719182-8720618	AT4G15280.1  CDS  gene_syn DL3685W, FCAALL.255, UDP-GLUCOSYL TRANSFERASE 71B5, UGT71B5  gene UGT71B5  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function quercetin 3-O-glucosyltransferase activity|GO:0080043|15352060|IDA  product UGT71B5 (UDP-GLUCOSYL TRANSFERASE 71B5); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring glycosyl groups  note UDP-GLUCOSYL TRANSFERASE 71B5 (UGT71B5); FUNCTIONS IN: quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT4G15260.1); Has 4690 Blast hits to 4671 proteins in 310 species: Archae - 0; Bacteria - 186; Metazoa - 1787; Fungi - 15; Plants - 2647; Viruses - 24; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT4G15280.1p  transcript_id AT4G15280.1  protein_id AT4G15280.1p  transcript_id AT4G15280.1  
At4g15290	chr4:008726337	0.0	C/8726337-8726599,8724690-8725008,8724373-8724498,8724124-8724246,8723666-8723866,8723421-8723556,8722808-8722986,8722370-8722717,8721693-8722271	AT4G15290.1  CDS  gene_syn ATCSLB05, ATCSLB5, CELLULOSE SYNTHASE LIKE 5, CSLB05, DL3690C, FCAALL.256  gene ATCSLB05  function encodes a gene similar to cellulose synthase  go_component membrane|GO:0016020||IEA  go_process cellulose biosynthetic process|GO:0030244||IEA  go_process polysaccharide biosynthetic process|GO:0000271||ISS  go_function transferase activity|GO:0016740||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  product ATCSLB05; cellulose synthase/ transferase/ transferase, transferring glycosyl groups  note ATCSLB05; FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: cellulose biosynthetic process, polysaccharide biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: ATCSLB02; cellulose synthase/ transferase/ transferase, transferring glycosyl groups (TAIR:AT2G32620.1); Has 1551 Blast hits to 1458 proteins in 283 species: Archae - 0; Bacteria - 390; Metazoa - 0; Fungi - 2; Plants - 1144; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT4G15290.1p  transcript_id AT4G15290.1  protein_id AT4G15290.1p  transcript_id AT4G15290.1  
At4g15300	chr4:008732535	0.0	C/8732535-8732748,8732152-8732456,8731866-8732017,8731441-8731819,8731160-8731342,8730932-8731059,8730723-8730825	AT4G15300.1  CDS  gene_syn CYP702A2, CYTOCHROME P450, FAMILY 702, SUBFAMILY A, POLYPEPTIDE 2, DL3695C, FCAALL.257  gene CYP702A2  function a member of the cytochrome P450 gene family. molecular function unknown.  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP702A2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP702A2; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP702A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G65670.1); Has 18539 Blast hits to 18499 proteins in 1028 species: Archae - 21; Bacteria - 1792; Metazoa - 9249; Fungi - 2599; Plants - 4227; Viruses - 3; Other Eukaryotes - 648 (source: NCBI BLink).  protein_id AT4G15300.1p  transcript_id AT4G15300.1  protein_id AT4G15300.1p  transcript_id AT4G15300.1  
At4g15310	chr4:008736721	0.0	W/8736721-8736935,8737425-8737743,8738477-8738626,8738719-8739057,8739132-8739210,8739551-8739654,8739743-8739870,8739954-8740047	AT4G15310.1  CDS  gene_syn CYP702A3, CYTOCHROME P450, FAMILY 702, SUBFAMILY A, POLYPEPTIDE 3, DL3700W, FCAALL.266  gene CYP702A3  function a member of the cytochrome P450 gene family. molecular function unknown.  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  product CYP702A3; electron carrier/ heme binding / iron ion binding / monooxygenase  note CYP702A3; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, heme binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group IV (InterPro:IPR002403), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, C-terminal region (InterPro:IPR017973); BEST Arabidopsis thaliana protein match is: CYP702A2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G15300.1); Has 17266 Blast hits to 17235 proteins in 1013 species: Archae - 21; Bacteria - 1930; Metazoa - 8809; Fungi - 1973; Plants - 3903; Viruses - 3; Other Eukaryotes - 627 (source: NCBI BLink).  protein_id AT4G15310.1p  transcript_id AT4G15310.1  protein_id AT4G15310.1p  transcript_id AT4G15310.1  
At4g15320	chr4:008747719	0.0	C/8747719-8747981,8747070-8747388,8746669-8746923,8746467-8746626,8746075-8746376,8745836-8745971,8745545-8745723,8745016-8745360,8744826-8744920,8744626-8744783,8744470-8744550,8742639-8742832	AT4G15320.1  CDS  gene_syn ATCSLB06, ATCSLB6, CELLULOSE SYNTHASE LIKE B6, CSLB06, DL3705C, FCAALL.268  gene ATCSLB06  function encodes a gene similar to cellulose synthase  go_component membrane|GO:0016020||IEA  go_process cellulose biosynthetic process|GO:0030244||IEA  go_process polysaccharide biosynthetic process|GO:0000271||ISS  go_function transferase activity|GO:0016740||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  product ATCSLB06 (CELLULOSE SYNTHASE LIKE B6); cellulose synthase/ transferase/ transferase, transferring glycosyl groups  note CELLULOSE SYNTHASE LIKE B6 (ATCSLB06); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: cellulose biosynthetic process, polysaccharide biosynthetic process; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: ATCSLB05; cellulose synthase/ transferase/ transferase, transferring glycosyl groups (TAIR:AT4G15290.1); Has 1687 Blast hits to 1518 proteins in 307 species: Archae - 0; Bacteria - 530; Metazoa - 0; Fungi - 0; Plants - 1136; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT4G15320.1p  transcript_id AT4G15320.1  protein_id AT4G15320.1p  transcript_id AT4G15320.1  
At4g15330	chr4:008752229	0.0	C/8752229-8753134,8751523-8752158	AT4G15330.1  CDS  gene_syn CYP705A1, CYTOCHROME P450, FAMILY 705, SUBFAMILY A, POLYPEPTIDE 1, DL3710C, FCAALL.270  gene CYP705A1  function a member of the cytochrome P450 family  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP705A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP705A1; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: root, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP705A22; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G20130.1); Has 23186 Blast hits to 23081 proteins in 1232 species: Archae - 21; Bacteria - 1929; Metazoa - 10258; Fungi - 4490; Plants - 5641; Viruses - 6; Other Eukaryotes - 841 (source: NCBI BLink).  protein_id AT4G15330.1p  transcript_id AT4G15330.1  protein_id AT4G15330.1p  transcript_id AT4G15330.1  
At4g15340	chr4:008760386	0.0	C/8760386-8760589,8760086-8760271,8759894-8759983,8759601-8759804,8759438-8759522,8758469-8758635,8757662-8757853,8757479-8757592,8757078-8757329,8756899-8756997,8755704-8755760,8755572-8755618,8754989-8755475,8754670-8754786	AT4G15340.1  CDS  gene_syn 04C11, ARABIDOPSIS THALIANA PENTACYCLIC TRITERPENE SYNTHASE 1, ATPEN1, DL3715C, FCAALL.158, PENTACYCLIC TRITERPENE SYNTHASE  gene ATPEN1  function Encodes a protein that catalyzes the production of the tricyclic triterpene arabidiol when expressed in yeast.  go_process tricyclic triterpenoid biosynthetic process|GO:0010263|16774269|IDA  go_function arabidiol synthase activity|GO:0034075|16774269|IDA  product ATPEN1 (ARABIDOPSIS THALIANA PENTACYCLIC TRITERPENE SYNTHASE 1); arabidiol synthase  note ARABIDOPSIS THALIANA PENTACYCLIC TRITERPENE SYNTHASE 1 (ATPEN1); FUNCTIONS IN: arabidiol synthase activity; INVOLVED IN: tricyclic triterpenoid biosynthetic process; EXPRESSED IN: root; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Terpene synthase, conserved site (InterPro:IPR002365), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Squalene cyclase (InterPro:IPR018333), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: BARS1 (BARUOL SYNTHASE 1); baruol synthase/ catalytic (TAIR:AT4G15370.1); Has 1303 Blast hits to 1236 proteins in 356 species: Archae - 0; Bacteria - 541; Metazoa - 70; Fungi - 161; Plants - 338; Viruses - 0; Other Eukaryotes - 193 (source: NCBI BLink).  protein_id AT4G15340.1p  transcript_id AT4G15340.1  protein_id AT4G15340.1p  transcript_id AT4G15340.1  
At4g15345	chr4:008762189	0.0	W/8762189-8762305	AT4G15345.1  pseudogenic_transcript  pseudo  gene_syn CYP702A4P, CYTOCHROME P450, FAMILY 702, SUBFAMILY A, POLYPEPTIDE 4 PSEUDOGENE  gene CYP702A4P  function cytochrome P450 pseudogene  
At4g15350	chr4:008762953	0.0	W/8762953-8763852,8763934-8764563	AT4G15350.1  CDS  gene_syn CYP705A2, CYTOCHROME P450, FAMILY 705, SUBFAMILY A, POLYPEPTIDE 2, DL3720W, FCAALL.274  gene CYP705A2  function member of CYP705A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP705A2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP705A2; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP705A32; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G20950.1); Has 23779 Blast hits to 23671 proteins in 1242 species: Archae - 23; Bacteria - 2191; Metazoa - 10323; Fungi - 4622; Plants - 5664; Viruses - 6; Other Eukaryotes - 950 (source: NCBI BLink).  protein_id AT4G15350.1p  transcript_id AT4G15350.1  protein_id AT4G15350.1p  transcript_id AT4G15350.1  
At4g15360	chr4:008770185	0.0	W/8770185-8771102,8771187-8771852	AT4G15360.1  CDS  gene_syn CYP705A3, CYTOCHROME P450, FAMILY 705, SUBFAMILY A, POLYPEPTIDE 3, DL3725W, FCAALL.277  gene CYP705A3  function member of CYP705A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process biological_process|GO:0008150||ND  go_function oxygen binding|GO:0019825||ISS  product CYP705A3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP705A3; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP705A22; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G20130.1); Has 22791 Blast hits to 22724 proteins in 1224 species: Archae - 26; Bacteria - 1889; Metazoa - 10228; Fungi - 4368; Plants - 5383; Viruses - 3; Other Eukaryotes - 894 (source: NCBI BLink).  protein_id AT4G15360.1p  transcript_id AT4G15360.1  protein_id AT4G15360.1p  transcript_id AT4G15360.1  
At4g15370	chr4:008779482	0.0	C/8779482-8779685,8779198-8779383,8779003-8779092,8778466-8778666,8778152-8778236,8777878-8778044,8776415-8776615,8776212-8776325,8775839-8776090,8775646-8775744,8774775-8774823,8774647-8774680,8774060-8774546,8773786-8773896	AT4G15370.1  CDS  gene_syn BARS1, BARUOL SYNTHASE 1, DL3730C, FCAALL.279, PEN2, PENTACYCLIC TRITERPENE SYNTHASE 2  gene BARS1  function Encodes an oxidosqualene cyclase that primarily produces the tetracyclic triterpene baruol in vitro and when expressed in yeast. It can also make 22 other minor triterpenoid products with varying numbers of rings.  go_process tetracyclic triterpenoid biosynthetic process|GO:0010686|17705488|IDA  go_process pentacyclic triterpenoid biosynthetic process|GO:0019745||ISS  go_function catalytic activity|GO:0003824||ISS  go_function baruol synthase activity|GO:0080011|17705488|IDA  product BARS1 (BARUOL SYNTHASE 1); baruol synthase/ catalytic  note BARUOL SYNTHASE 1 (BARS1); FUNCTIONS IN: catalytic activity, baruol synthase activity; INVOLVED IN: pentacyclic triterpenoid biosynthetic process, tetracyclic triterpenoid biosynthetic process; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Terpene synthase, conserved site (InterPro:IPR002365), Squalene cyclase (InterPro:IPR018333), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: ATPEN1 (ARABIDOPSIS THALIANA PENTACYCLIC TRITERPENE SYNTHASE 1); arabidiol synthase (TAIR:AT4G15340.1); Has 1298 Blast hits to 1246 proteins in 358 species: Archae - 0; Bacteria - 529; Metazoa - 71; Fungi - 161; Plants - 339; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink).  protein_id AT4G15370.1p  transcript_id AT4G15370.1  protein_id AT4G15370.1p  transcript_id AT4G15370.1  
At4g15380	chr4:008788762	0.0	W/8788762-8789667,8789744-8790391	AT4G15380.1  CDS  gene_syn CYP705A4, DL3735W, FCAALL.280  gene CYP705A4  function member of CYP705A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP705A4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP705A4; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, F mature embryo stage, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP705A15; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G20080.2); Has 23924 Blast hits to 23793 proteins in 1280 species: Archae - 28; Bacteria - 2311; Metazoa - 10326; Fungi - 4604; Plants - 5668; Viruses - 6; Other Eukaryotes - 981 (source: NCBI BLink).  protein_id AT4G15380.1p  transcript_id AT4G15380.1  protein_id AT4G15380.1p  transcript_id AT4G15380.1  
At4g15390	chr4:008792941	0.0	C/8792941-8794281	AT4G15390.1  CDS  gene_syn DL3740C, FCAALL.282  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT3G30280.1); Has 1189 Blast hits to 1185 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 23; Plants - 1164; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G15390.1p  transcript_id AT4G15390.1  protein_id AT4G15390.1p  transcript_id AT4G15390.1  
At4g15393	chr4:008804158	0.0	W/8804158-8804366,8804887-8804987,8805087-8805199,8805307-8805456,8805713-8806051,8806431-8806613,8806718-8806723	AT4G15393.3  CDS  gene_syn CYP702A5  gene CYP702A5  function a member of the cytochrome P450 gene family. molecular function unknown.  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process biological_process|GO:0008150||ND  product CYP702A5; electron carrier/ heme binding / iron ion binding / monooxygenase  note CYP702A5; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, heme binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group IV (InterPro:IPR002403); BEST Arabidopsis thaliana protein match is: CYP702A6; electron carrier/ heme binding / iron ion binding / monooxygenase (TAIR:AT4G15396.1); Has 6658 Blast hits to 6642 proteins in 574 species: Archae - 16; Bacteria - 720; Metazoa - 3488; Fungi - 752; Plants - 1375; Viruses - 0; Other Eukaryotes - 307 (source: NCBI BLink).  protein_id AT4G15393.3p  transcript_id AT4G15393.3  protein_id AT4G15393.3p  transcript_id AT4G15393.3  
At4g15393	chr4:008804158	0.0	W/8804158-8804366,8804887-8805199,8805307-8805456,8805713-8806051,8806431-8806613,8806711-8806838,8806935-8807016	AT4G15393.2  CDS  gene_syn CYP702A5  gene CYP702A5  function a member of the cytochrome P450 gene family. molecular function unknown.  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process biological_process|GO:0008150||ND  product CYP702A5; electron carrier/ heme binding / iron ion binding / monooxygenase  note CYP702A5; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, heme binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group IV (InterPro:IPR002403), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP702A6; electron carrier/ heme binding / iron ion binding / monooxygenase (TAIR:AT4G15396.1); Has 17818 Blast hits to 17778 proteins in 1006 species: Archae - 21; Bacteria - 1741; Metazoa - 8826; Fungi - 2616; Plants - 3941; Viruses - 3; Other Eukaryotes - 670 (source: NCBI BLink).  protein_id AT4G15393.2p  transcript_id AT4G15393.2  protein_id AT4G15393.2p  transcript_id AT4G15393.2  
At4g15393	chr4:008804158	0.0	W/8804158-8804366,8804887-8805199,8805307-8805456,8805713-8806051,8806431-8806613,8806718-8806723	AT4G15393.1  CDS  gene_syn CYP702A5  gene CYP702A5  function a member of the cytochrome P450 gene family. molecular function unknown.  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process biological_process|GO:0008150||ND  product CYP702A5; electron carrier/ heme binding / iron ion binding / monooxygenase  note CYP702A5; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, heme binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group IV (InterPro:IPR002403); BEST Arabidopsis thaliana protein match is: CYP702A6; electron carrier/ heme binding / iron ion binding / monooxygenase (TAIR:AT4G15396.1); Has 7152 Blast hits to 7141 proteins in 593 species: Archae - 18; Bacteria - 794; Metazoa - 3751; Fungi - 789; Plants - 1483; Viruses - 0; Other Eukaryotes - 317 (source: NCBI BLink).  protein_id AT4G15393.1p  transcript_id AT4G15393.1  protein_id AT4G15393.1p  transcript_id AT4G15393.1  
At4g15396	chr4:008807574	0.0	W/8807574-8807782,8808413-8808725,8808823-8808972,8809246-8809590,8809816-8809998,8810095-8810222,8810320-8810419	AT4G15396.1  CDS  gene_syn CYP702A6  gene CYP702A6  function a member of the cytochrome P450 family. molecular function unknown.  go_component membrane|GO:0016020|17432890|IDA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  product CYP702A6; electron carrier/ heme binding / iron ion binding / monooxygenase  note CYP702A6; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, heme binding; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group IV (InterPro:IPR002403), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, C-terminal region (InterPro:IPR017973); BEST Arabidopsis thaliana protein match is: CYP702A5; electron carrier/ heme binding / iron ion binding / monooxygenase (TAIR:AT4G15393.2); Has 17220 Blast hits to 17184 proteins in 999 species: Archae - 21; Bacteria - 1662; Metazoa - 8870; Fungi - 2352; Plants - 3695; Viruses - 3; Other Eukaryotes - 617 (source: NCBI BLink).  protein_id AT4G15396.1p  transcript_id AT4G15396.1  protein_id AT4G15396.1p  transcript_id AT4G15396.1  
At4g15398	chr4:008811525	0.0	W/8811525-8811635	AT4G15398.1  pseudogenic_transcript  pseudo  gene_syn CYP702A7P, CYTOCHROME P450, FAMILY 702, SUBFAMILY A, POLYPEPTIDE 7 PSEUDOGENE  gene CYP702A7P  function cytochrome P450 pseudogene  
At4g15400	chr4:008812121	0.0	C/8812121-8813428	AT4G15400.1  CDS  gene_syn DL3745C, FCAALL.284  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT5G47980.1); Has 1127 Blast hits to 1125 proteins in 105 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 22; Plants - 1103; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G15400.1p  transcript_id AT4G15400.1  protein_id AT4G15400.1p  transcript_id AT4G15400.1  
At4g15410	chr4:008814868	0.0	W/8814868-8815364,8815611-8815902,8816020-8816115,8816216-8816596	AT4G15410.1  CDS  gene_syn Arabidopsis thaliana serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma, DL3750W, FCAALL.290, PUX5  gene PUX5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515|17190830|IDA  product PUX5 (Arabidopsis thaliana serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma); protein binding  note Arabidopsis thaliana serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (PUX5); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), UBX (InterPro:IPR001012), SEP (InterPro:IPR012989), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: PUX4; protein binding (TAIR:AT4G04210.1); Has 2169 Blast hits to 897 proteins in 184 species: Archae - 0; Bacteria - 87; Metazoa - 456; Fungi - 202; Plants - 88; Viruses - 16; Other Eukaryotes - 1320 (source: NCBI BLink).  protein_id AT4G15410.1p  transcript_id AT4G15410.1  protein_id AT4G15410.1p  transcript_id AT4G15410.1  
At4g15415	chr4:008817707	0.0	W/8817707-8818897,8818972-8819349	AT4G15415.1  CDS  gene_syn ATB  GAMMA  gene ATB  GAMMA  function B  regulatory subunit of PP2A (AtB gamma)  go_component protein phosphatase type 2A complex|GO:0000159||IEA  go_process signal transduction|GO:0007165||IEA  go_component protein phosphatase type 2A complex|GO:0000159||ISS  go_process signal transduction|GO:0007165||ISS  go_function poly(U) binding|GO:0008266|17511964|IDA  go_function protein phosphatase type 2A regulator activity|GO:0008601||ISS  product ATB  GAMMA; poly(U) binding / protein phosphatase type 2A regulator  note ATB  GAMMA; FUNCTIONS IN: poly(U) binding, protein phosphatase type 2A regulator activity; INVOLVED IN: signal transduction; LOCATED IN: protein phosphatase type 2A complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2A, regulatory B subunit, B56 (InterPro:IPR002554); BEST Arabidopsis thaliana protein match is: serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B , putative (TAIR:AT3G21650.1); Has 862 Blast hits to 858 proteins in 140 species: Archae - 0; Bacteria - 4; Metazoa - 492; Fungi - 95; Plants - 156; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).  protein_id AT4G15415.1p  transcript_id AT4G15415.1  protein_id AT4G15415.1p  transcript_id AT4G15415.1  
At4g15415	chr4:008817707	0.0	W/8817707-8818897,8818972-8819349	AT4G15415.2  CDS  gene_syn ATB  GAMMA  gene ATB  GAMMA  function B  regulatory subunit of PP2A (AtB gamma)  go_component protein phosphatase type 2A complex|GO:0000159||IEA  go_process signal transduction|GO:0007165||IEA  go_component protein phosphatase type 2A complex|GO:0000159||ISS  go_process signal transduction|GO:0007165||ISS  go_function poly(U) binding|GO:0008266|17511964|IDA  go_function protein phosphatase type 2A regulator activity|GO:0008601||ISS  product ATB  GAMMA; poly(U) binding / protein phosphatase type 2A regulator  note ATB  GAMMA; FUNCTIONS IN: poly(U) binding, protein phosphatase type 2A regulator activity; INVOLVED IN: signal transduction; LOCATED IN: protein phosphatase type 2A complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2A, regulatory B subunit, B56 (InterPro:IPR002554); BEST Arabidopsis thaliana protein match is: serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B , putative (TAIR:AT3G21650.1); Has 862 Blast hits to 858 proteins in 140 species: Archae - 0; Bacteria - 4; Metazoa - 492; Fungi - 95; Plants - 156; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).  protein_id AT4G15415.2p  transcript_id AT4G15415.2  protein_id AT4G15415.2p  transcript_id AT4G15415.2  
At4g15417	chr4:008821759	0.0	W/8821759-8822148,8822476-8822619,8822731-8822991	AT4G15417.1  CDS  gene_syn ARABIDOPSIS THALIANA RNASEIII-LIKE 1, ATRTL1  gene ATRTL1  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_function ribonuclease III activity|GO:0004525||IEA  go_component cellular_component|GO:0005575||ND  go_process RNA processing|GO:0006396||ISS  go_function RNA binding|GO:0003723||ISS  go_function ribonuclease III activity|GO:0004525||ISS  product ATRTL1 (ARABIDOPSIS THALIANA RNASEIII-LIKE 1); RNA binding / ribonuclease III  note ARABIDOPSIS THALIANA RNASEIII-LIKE 1 (ATRTL1); FUNCTIONS IN: RNA binding, ribonuclease III activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Ribonuclease III (InterPro:IPR000999); BEST Arabidopsis thaliana protein match is: RTL2 (RNASE THREE-LIKE PROTEIN 2); double-stranded RNA binding / ribonuclease III (TAIR:AT3G20420.1); Has 3988 Blast hits to 3967 proteins in 1233 species: Archae - 17; Bacteria - 2247; Metazoa - 224; Fungi - 148; Plants - 112; Viruses - 12; Other Eukaryotes - 1228 (source: NCBI BLink).  protein_id AT4G15417.1p  transcript_id AT4G15417.1  protein_id AT4G15417.1p  transcript_id AT4G15417.1  
At4g15420	chr4:008823822	0.0	W/8823822-8824004,8824352-8825623,8825719-8825949	AT4G15420.1  CDS  gene_syn DL3755W, FCAALL.127  go_component intracellular|GO:0005622||IEA  go_process proteolysis|GO:0006508||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function peptidase activity|GO:0008233||IEA  go_function zinc ion binding|GO:0008270||IEA  product PRLI-interacting factor K  note PRLI-interacting factor K; FUNCTIONS IN: peptidase activity, zinc ion binding; INVOLVED IN: proteolysis, ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Peptidase, archaeal and bacterial C-terminal (InterPro:IPR007280), Ubiquitin fusion degradation protein UFD1 (InterPro:IPR004854); BEST Arabidopsis thaliana protein match is: ubiquitin fusion degradation UFD1 family protein (TAIR:AT2G21270.3); Has 784 Blast hits to 751 proteins in 167 species: Archae - 0; Bacteria - 2; Metazoa - 282; Fungi - 165; Plants - 109; Viruses - 0; Other Eukaryotes - 226 (source: NCBI BLink).  protein_id AT4G15420.1p  transcript_id AT4G15420.1  protein_id AT4G15420.1p  transcript_id AT4G15420.1  
At4g15430	chr4:008828214	0.0	W/8828214-8828527,8828618-8828773,8828862-8828997,8829089-8829190,8829274-8829393,8829478-8829558,8829648-8829988,8830071-8830316,8830393-8830717,8830798-8831031,8831124-8831354	AT4G15430.1  CDS  gene_syn DL3760W, FCAALL.292  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: early-responsive to dehydration protein-related / ERD protein-related (TAIR:AT3G21620.1); Has 923 Blast hits to 821 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 164; Fungi - 446; Plants - 258; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT4G15430.1p  transcript_id AT4G15430.1  protein_id AT4G15430.1p  transcript_id AT4G15430.1  
At4g15430	chr4:008828214	0.0	W/8828214-8828527,8828618-8828773,8828862-8828997,8829089-8829190,8829274-8829393,8829478-8829558,8829648-8829988,8830071-8830316,8830393-8830717,8830798-8831031,8831127-8831354	AT4G15430.2  CDS  gene_syn DL3760W, FCAALL.292  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: early-responsive to dehydration protein-related / ERD protein-related (TAIR:AT3G21620.1).  protein_id AT4G15430.2p  transcript_id AT4G15430.2  protein_id AT4G15430.2p  transcript_id AT4G15430.2  
At4g15440	chr4:008835869	0.0	W/8835869-8835985,8837425-8838462	AT4G15440.1  CDS  gene_syn CYP74B2, DL3766W, FCAALL.125, HPL1, HYDROPEROXIDE LYASE 1  gene HPL1  function Encodes a hydroperoxide lyase. Also a member of the CYP74B cytochrome p450 family. In the ecotype Columbia (Col) the gene contains a 10-nucleotide deletion in its first exon that causes it to code for a truncated protein that results in a non-functional hydroperoxide lyase.  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process fatty acid metabolic process|GO:0006631|16258015|ISS  go_process response to wounding|GO:0009611|17675405|IEP  product HPL1 (HYDROPEROXIDE LYASE 1); electron carrier/ heme binding / iron ion binding / monooxygenase  note HYDROPEROXIDE LYASE 1 (HPL1); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, heme binding; INVOLVED IN: fatty acid metabolic process, response to wounding; LOCATED IN: chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group IV (InterPro:IPR002403); BEST Arabidopsis thaliana protein match is: AOS (ALLENE OXIDE SYNTHASE); allene oxide synthase/ hydro-lyase/ oxygen binding (TAIR:AT5G42650.1); Has 5162 Blast hits to 5156 proteins in 469 species: Archae - 10; Bacteria - 234; Metazoa - 3023; Fungi - 356; Plants - 1371; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).  protein_id AT4G15440.1p  transcript_id AT4G15440.1  protein_id AT4G15440.1p  transcript_id AT4G15440.1  
At4g15450	chr4:008839437	0.0	W/8839437-8840066,8840144-8840253,8840579-8840745,8840845-8840929,8841009-8841162	AT4G15450.1  CDS  gene_syn DL3768W, FCAALL.296  product unknown protein  note CONTAINS InterPro DOMAIN/s: Senescence-associated (InterPro:IPR009686); BEST Arabidopsis thaliana protein match is: senescence/dehydration-associated protein-related (TAIR:AT3G21600.1); Has 81 Blast hits to 81 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G15450.1p  transcript_id AT4G15450.1  protein_id AT4G15450.1p  transcript_id AT4G15450.1  
At4g15460	chr4:008841420	0.0	C/8841420-8841866	AT4G15460.1  CDS  gene_syn DL3770C, FCAALL.299  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 61854 Blast hits to 14572 proteins in 1026 species: Archae - 56; Bacteria - 26668; Metazoa - 17060; Fungi - 2706; Plants - 6701; Viruses - 771; Other Eukaryotes - 7892 (source: NCBI BLink).  protein_id AT4G15460.1p  transcript_id AT4G15460.1  protein_id AT4G15460.1p  transcript_id AT4G15460.1  
At4g15470	chr4:008843661	0.0	W/8843661-8843952,8844726-8844839,8845033-8845190,8845299-8845505	AT4G15470.1  CDS  gene_syn DL3775W, FCAALL.58  product unknown protein  note EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0005 (InterPro:IPR006214); BEST Arabidopsis thaliana protein match is: glutamate binding (TAIR:AT1G03070.1); Has 4000 Blast hits to 3999 proteins in 955 species: Archae - 0; Bacteria - 1775; Metazoa - 750; Fungi - 92; Plants - 143; Viruses - 77; Other Eukaryotes - 1163 (source: NCBI BLink).  protein_id AT4G15470.1p  transcript_id AT4G15470.1  protein_id AT4G15470.1p  transcript_id AT4G15470.1  
At4g15475	chr4:008845927	0.0	W/8845927-8846202,8846400-8846645,8846751-8847157,8847450-8847635,8847735-8847927,8848012-8848088,8848168-8848318,8848405-8848701	AT4G15475.1  CDS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product F-box family protein (FBL4)  note F-box family protein (FBL4); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: F-box family protein (FBL3) (TAIR:AT5G01720.1); Has 11387 Blast hits to 3909 proteins in 204 species: Archae - 0; Bacteria - 447; Metazoa - 5266; Fungi - 1025; Plants - 3010; Viruses - 9; Other Eukaryotes - 1630 (source: NCBI BLink).  protein_id AT4G15475.1p  transcript_id AT4G15475.1  protein_id AT4G15475.1p  transcript_id AT4G15475.1  
At4g15480	chr4:008849000	0.0	C/8849000-8850472	AT4G15480.1  CDS  gene_syn DL3780C, FCAALL.304, UGT84A1  gene UGT84A1  function Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity.  go_component cellular_component|GO:0005575||ND  go_process response to UV-B|GO:0010224|14739338|IGI  go_process response to UV-B|GO:0010224|18266923|IEP  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function sinapate 1-glucosyltransferase activity|GO:0050284|17217457|ISS  product UGT84A1; UDP-glycosyltransferase/ sinapate 1-glucosyltransferase/ transferase, transferring glycosyl groups  note UGT84A1; FUNCTIONS IN: UDP-glycosyltransferase activity, sinapate 1-glucosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: response to UV-B; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT84A3; UDP-glycosyltransferase/ sinapate 1-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT4G15490.1); Has 5015 Blast hits to 4983 proteins in 330 species: Archae - 0; Bacteria - 117; Metazoa - 1993; Fungi - 41; Plants - 2728; Viruses - 103; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT4G15480.1p  transcript_id AT4G15480.1  protein_id AT4G15480.1p  transcript_id AT4G15480.1  
At4g15490	chr4:008852864	0.0	C/8852864-8854303	AT4G15490.1  CDS  gene_syn DL3785C, FCAALL.17, UGT84A3  gene UGT84A3  function Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity.  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function sinapate 1-glucosyltransferase activity|GO:0050284|17217457|ISS  product UGT84A3; UDP-glycosyltransferase/ sinapate 1-glucosyltransferase/ transferase, transferring glycosyl groups  note UGT84A3; FUNCTIONS IN: UDP-glycosyltransferase activity, sinapate 1-glucosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT84A4; UDP-glycosyltransferase/ sinapate 1-glucosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT4G15500.1); Has 5030 Blast hits to 4997 proteins in 340 species: Archae - 0; Bacteria - 154; Metazoa - 2004; Fungi - 26; Plants - 2721; Viruses - 95; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT4G15490.1p  transcript_id AT4G15490.1  protein_id AT4G15490.1p  transcript_id AT4G15490.1  
At4g15500	chr4:008857095	0.0	C/8857095-8858522	AT4G15500.1  CDS  gene_syn DL3790C, FCAALL.307, UGT84A4  gene UGT84A4  function Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity.  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  go_function sinapate 1-glucosyltransferase activity|GO:0050284|17217457|ISS  product UGT84A4; UDP-glycosyltransferase/ sinapate 1-glucosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note UGT84A4; FUNCTIONS IN: transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, sinapate 1-glucosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT84A3; UDP-glycosyltransferase/ sinapate 1-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT4G15490.1); Has 4789 Blast hits to 4761 proteins in 318 species: Archae - 0; Bacteria - 105; Metazoa - 1808; Fungi - 39; Plants - 2723; Viruses - 86; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT4G15500.1p  transcript_id AT4G15500.1  protein_id AT4G15500.1p  transcript_id AT4G15500.1  
At4g15510	chr4:008860701	0.0	W/8860701-8860814,8861036-8861140,8861324-8861752,8862314-8862529	AT4G15510.1  CDS  gene_syn DL3795W, FCAALL.88  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_process photosynthesis|GO:0015979||IEA  go_function calcium ion binding|GO:0005509||IEA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  go_component oxygen evolving complex|GO:0009654||ISS  go_component chloroplast photosystem II|GO:0030095||ISS  product photosystem II reaction center PsbP family protein  note photosystem II reaction center PsbP family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: in 9 components; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); BEST Arabidopsis thaliana protein match is: PPL1 (PsbP-like protein 1); calcium ion binding (TAIR:AT3G55330.1); Has 272 Blast hits to 272 proteins in 58 species: Archae - 0; Bacteria - 79; Metazoa - 0; Fungi - 0; Plants - 118; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT4G15510.1p  transcript_id AT4G15510.1  protein_id AT4G15510.1p  transcript_id AT4G15510.1  
At4g15510	chr4:008860701	0.0	W/8860701-8860814,8861036-8861140,8861324-8861794	AT4G15510.2  CDS  gene_syn DL3795W, FCAALL.88  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process photosynthesis|GO:0015979||IEA  go_function calcium ion binding|GO:0005509||IEA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  go_component oxygen evolving complex|GO:0009654||ISS  go_component chloroplast photosystem II|GO:0030095||ISS  product photosystem II reaction center PsbP family protein  note photosystem II reaction center PsbP family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); Has 221 Blast hits to 221 proteins in 47 species: Archae - 0; Bacteria - 61; Metazoa - 0; Fungi - 0; Plants - 106; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT4G15510.2p  transcript_id AT4G15510.2  protein_id AT4G15510.2p  transcript_id AT4G15510.2  
At4g15510	chr4:008861351	0.0	W/8861351-8861752,8862314-8862529	AT4G15510.3  CDS  gene_syn DL3795W, FCAALL.88  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process photosynthesis|GO:0015979||IEA  go_function calcium ion binding|GO:0005509||IEA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  go_component oxygen evolving complex|GO:0009654||ISS  go_component chloroplast photosystem II|GO:0030095||ISS  product photosystem II reaction center PsbP family protein  note photosystem II reaction center PsbP family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); BEST Arabidopsis thaliana protein match is: PPL1 (PsbP-like protein 1); calcium ion binding (TAIR:AT3G55330.1); Has 258 Blast hits to 258 proteins in 57 species: Archae - 0; Bacteria - 79; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT4G15510.3p  transcript_id AT4G15510.3  protein_id AT4G15510.3p  transcript_id AT4G15510.3  
At4g15520	chr4:008862829	0.0	W/8862829-8863038,8863151-8863255,8863838-8863964,8864140-8864366	AT4G15520.1  CDS  gene_syn DL3800W, FCAALL.322  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_function RNA methyltransferase activity|GO:0008173||IEA  go_component cellular_component|GO:0005575||ND  go_process RNA processing|GO:0006396||ISS  go_function RNA binding|GO:0003723||ISS  go_function RNA methyltransferase activity|GO:0008173||ISS  product tRNA/rRNA methyltransferase (SpoU) family protein  note tRNA/rRNA methyltransferase (SpoU) family protein; FUNCTIONS IN: RNA binding, RNA methyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537); Has 4370 Blast hits to 4370 proteins in 1038 species: Archae - 9; Bacteria - 2930; Metazoa - 62; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 1322 (source: NCBI BLink).  protein_id AT4G15520.1p  transcript_id AT4G15520.1  protein_id AT4G15520.1p  transcript_id AT4G15520.1  
At4g15530	chr4:008869118	0.0	C/8869118-8869129,8868776-8869009,8868271-8868408,8868014-8868176,8867699-8867934,8867493-8867621,8867229-8867408,8866683-8866985,8866441-8866602,8866274-8866363,8866046-8866181,8865796-8865973,8865458-8865716,8865235-8865372,8864988-8865157,8864828-8864873	AT4G15530.3  CDS  gene_syn DL3805C, FCAALL.325, PPDK, pyruvate orthophosphate dikinase  gene PPDK  go_component chloroplast|GO:0009507|18431481|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|16915520|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component chloroplast|GO:0009507|16915520|IDA  go_process response to absence of light|GO:0009646|16915520|IEP  go_process phosphorylation|GO:0016310||ISS  go_function kinase activity|GO:0016301||ISS  go_function pyruvate, phosphate dikinase activity|GO:0050242|16915520|ISS  product PPDK (pyruvate orthophosphate dikinase); kinase/ pyruvate, phosphate dikinase  note pyruvate orthophosphate dikinase (PPDK); FUNCTIONS IN: pyruvate, phosphate dikinase activity, kinase activity; INVOLVED IN: response to absence of light, phosphorylation; LOCATED IN: cytosol, nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: PEP-utilising enzyme, mobile region (InterPro:IPR008279), Pyruvate, phosphate dikinase (InterPro:IPR010121), ATP-grasp fold, subdomain 1 (InterPro:IPR013815), Pyruvate phosphate dikinase, PEP/pyruvate-binding (InterPro:IPR002192), Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), PEP-utilising enzyme, mobile region, conserved site (InterPro:IPR018274), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), PEP-utilizing enzyme (InterPro:IPR000121); Has 10389 Blast hits to 10346 proteins in 1379 species: Archae - 188; Bacteria - 5289; Metazoa - 4; Fungi - 14; Plants - 89; Viruses - 0; Other Eukaryotes - 4805 (source: NCBI BLink).  protein_id AT4G15530.3p  transcript_id AT4G15530.3  protein_id AT4G15530.3p  transcript_id AT4G15530.3  
At4g15530	chr4:008869118	0.0	C/8869118-8869183,8868776-8869009,8868271-8868408,8868014-8868176,8867699-8867934,8867493-8867621,8867229-8867408,8866683-8866985,8866441-8866602,8866274-8866363,8866046-8866181,8865796-8865973,8865458-8865716,8865235-8865372,8864988-8865157,8864828-8864873	AT4G15530.2  CDS  gene_syn DL3805C, FCAALL.325, PPDK, pyruvate orthophosphate dikinase  gene PPDK  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|16915520|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component chloroplast|GO:0009507|16915520|IDA  go_process response to absence of light|GO:0009646|16915520|IEP  go_process phosphorylation|GO:0016310||ISS  go_function kinase activity|GO:0016301||ISS  go_function pyruvate, phosphate dikinase activity|GO:0050242|16915520|ISS  product PPDK (pyruvate orthophosphate dikinase); kinase/ pyruvate, phosphate dikinase  note pyruvate orthophosphate dikinase (PPDK); FUNCTIONS IN: pyruvate, phosphate dikinase activity, kinase activity; INVOLVED IN: response to absence of light, phosphorylation; LOCATED IN: cytosol, nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: PEP-utilising enzyme, mobile region (InterPro:IPR008279), Pyruvate, phosphate dikinase (InterPro:IPR010121), ATP-grasp fold, subdomain 1 (InterPro:IPR013815), Pyruvate phosphate dikinase, PEP/pyruvate-binding (InterPro:IPR002192), Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), PEP-utilising enzyme, mobile region, conserved site (InterPro:IPR018274), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), PEP-utilizing enzyme (InterPro:IPR000121); Has 10395 Blast hits to 10348 proteins in 1379 species: Archae - 188; Bacteria - 5294; Metazoa - 4; Fungi - 14; Plants - 89; Viruses - 0; Other Eukaryotes - 4806 (source: NCBI BLink).  protein_id AT4G15530.2p  transcript_id AT4G15530.2  protein_id AT4G15530.2p  transcript_id AT4G15530.2  
At4g15530	chr4:008870476	0.0	C/8870476-8870727,8869118-8869174,8868776-8869009,8868271-8868408,8868014-8868176,8867699-8867934,8867493-8867621,8867229-8867408,8866683-8866985,8866441-8866602,8866274-8866363,8866046-8866181,8865796-8865973,8865458-8865716,8865235-8865372,8864988-8865157,8864828-8864873	AT4G15530.1  CDS  gene_syn DL3805C, FCAALL.325, PPDK, pyruvate orthophosphate dikinase  gene PPDK  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|16915520|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component chloroplast|GO:0009507|16915520|IDA  go_process response to absence of light|GO:0009646|16915520|IEP  go_process phosphorylation|GO:0016310||ISS  go_function kinase activity|GO:0016301||ISS  go_function pyruvate, phosphate dikinase activity|GO:0050242|16915520|ISS  product PPDK (pyruvate orthophosphate dikinase); kinase/ pyruvate, phosphate dikinase  note pyruvate orthophosphate dikinase (PPDK); FUNCTIONS IN: pyruvate, phosphate dikinase activity, kinase activity; INVOLVED IN: response to absence of light, phosphorylation; LOCATED IN: cytosol, nucleus, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: PEP-utilising enzyme, mobile region (InterPro:IPR008279), ATP-grasp fold, subdomain 1 (InterPro:IPR013815), Pyruvate, phosphate dikinase (InterPro:IPR010121), Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate phosphate dikinase, PEP/pyruvate-binding (InterPro:IPR002192), PEP-utilising enzyme, mobile region, conserved site (InterPro:IPR018274), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), PEP-utilizing enzyme (InterPro:IPR000121); Has 10402 Blast hits to 10355 proteins in 1379 species: Archae - 188; Bacteria - 5300; Metazoa - 4; Fungi - 14; Plants - 89; Viruses - 0; Other Eukaryotes - 4807 (source: NCBI BLink).  protein_id AT4G15530.1p  transcript_id AT4G15530.1  protein_id AT4G15530.1p  transcript_id AT4G15530.1  
At4g15530	chr4:008870476	0.0	C/8870476-8870727,8869118-8869174,8868776-8869009,8868271-8868408,8868014-8868176,8867699-8867934,8867493-8867621,8867229-8867408,8866683-8866985,8866441-8866602,8866274-8866363,8866046-8866181,8865796-8865973,8865458-8865716,8865235-8865372,8864988-8865157,8864828-8864873	AT4G15530.4  CDS  gene_syn DL3805C, FCAALL.325, PPDK, pyruvate orthophosphate dikinase  gene PPDK  go_component chloroplast|GO:0009507|18431481|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|16915520|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component chloroplast|GO:0009507|16915520|IDA  go_process response to absence of light|GO:0009646|16915520|IEP  go_process phosphorylation|GO:0016310||ISS  go_function kinase activity|GO:0016301||ISS  go_function pyruvate, phosphate dikinase activity|GO:0050242|16915520|ISS  product PPDK (pyruvate orthophosphate dikinase); kinase/ pyruvate, phosphate dikinase  note pyruvate orthophosphate dikinase (PPDK); FUNCTIONS IN: pyruvate, phosphate dikinase activity, kinase activity; INVOLVED IN: response to absence of light, phosphorylation; LOCATED IN: cytosol, nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: PEP-utilising enzyme, mobile region (InterPro:IPR008279), ATP-grasp fold, subdomain 1 (InterPro:IPR013815), Pyruvate, phosphate dikinase (InterPro:IPR010121), Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate phosphate dikinase, PEP/pyruvate-binding (InterPro:IPR002192), PEP-utilising enzyme, mobile region, conserved site (InterPro:IPR018274), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), PEP-utilizing enzyme (InterPro:IPR000121); Has 10402 Blast hits to 10355 proteins in 1379 species: Archae - 188; Bacteria - 5300; Metazoa - 4; Fungi - 14; Plants - 89; Viruses - 0; Other Eukaryotes - 4807 (source: NCBI BLink).  protein_id AT4G15530.4p  transcript_id AT4G15530.4  protein_id AT4G15530.4p  transcript_id AT4G15530.4  
At4g15530	chr4:008870476	0.0	C/8870476-8870748,8869118-8869174,8868776-8869009,8868271-8868408,8868014-8868176,8867699-8867934,8867493-8867621,8867229-8867408,8866683-8866985,8866441-8866602,8866274-8866363,8866046-8866181,8865796-8865973,8865458-8865716,8865235-8865372,8864988-8865157,8864828-8864873	AT4G15530.5  CDS  gene_syn DL3805C, FCAALL.325, PPDK, pyruvate orthophosphate dikinase  gene PPDK  go_component chloroplast|GO:0009507|18431481|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|16915520|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component chloroplast|GO:0009507|16915520|IDA  go_process response to absence of light|GO:0009646|16915520|IEP  go_process phosphorylation|GO:0016310||ISS  go_function kinase activity|GO:0016301||ISS  go_function pyruvate, phosphate dikinase activity|GO:0050242|16915520|ISS  product PPDK (pyruvate orthophosphate dikinase); kinase/ pyruvate, phosphate dikinase  note pyruvate orthophosphate dikinase (PPDK); FUNCTIONS IN: pyruvate, phosphate dikinase activity, kinase activity; INVOLVED IN: response to absence of light, phosphorylation; LOCATED IN: cytosol, nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: PEP-utilising enzyme, mobile region (InterPro:IPR008279), ATP-grasp fold, subdomain 1 (InterPro:IPR013815), Pyruvate, phosphate dikinase (InterPro:IPR010121), Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate phosphate dikinase, PEP/pyruvate-binding (InterPro:IPR002192), PEP-utilising enzyme, mobile region, conserved site (InterPro:IPR018274), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), PEP-utilizing enzyme (InterPro:IPR000121); Has 10398 Blast hits to 10351 proteins in 1379 species: Archae - 188; Bacteria - 5300; Metazoa - 4; Fungi - 14; Plants - 89; Viruses - 0; Other Eukaryotes - 4803 (source: NCBI BLink).  protein_id AT4G15530.5p  transcript_id AT4G15530.5  protein_id AT4G15530.5p  transcript_id AT4G15530.5  
At4g15530	chr4:008870476	0.0	C/8870476-8870748,8869118-8869174,8868776-8869009,8868271-8868408,8868014-8868176,8867699-8867934,8867493-8867621,8867229-8867408,8866683-8866985,8866441-8866602,8866274-8866363,8866046-8866181,8865796-8865973,8865458-8865716,8865235-8865372,8864988-8865157,8864828-8864873	AT4G15530.6  CDS  gene_syn DL3805C, FCAALL.325, PPDK, pyruvate orthophosphate dikinase  gene PPDK  go_component chloroplast|GO:0009507|18431481|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|16915520|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component chloroplast|GO:0009507|16915520|IDA  go_process response to absence of light|GO:0009646|16915520|IEP  go_process phosphorylation|GO:0016310||ISS  go_function kinase activity|GO:0016301||ISS  go_function pyruvate, phosphate dikinase activity|GO:0050242|16915520|ISS  product PPDK (pyruvate orthophosphate dikinase); kinase/ pyruvate, phosphate dikinase  note pyruvate orthophosphate dikinase (PPDK); FUNCTIONS IN: pyruvate, phosphate dikinase activity, kinase activity; INVOLVED IN: response to absence of light, phosphorylation; LOCATED IN: cytosol, nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: PEP-utilising enzyme, mobile region (InterPro:IPR008279), Pyruvate, phosphate dikinase (InterPro:IPR010121), ATP-grasp fold, subdomain 1 (InterPro:IPR013815), Pyruvate phosphate dikinase, PEP/pyruvate-binding (InterPro:IPR002192), Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), PEP-utilising enzyme, mobile region, conserved site (InterPro:IPR018274), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), PEP-utilizing enzyme (InterPro:IPR000121); Has 10398 Blast hits to 10351 proteins in 1379 species: Archae - 188; Bacteria - 5300; Metazoa - 4; Fungi - 14; Plants - 89; Viruses - 0; Other Eukaryotes - 4803 (source: NCBI BLink).  protein_id AT4G15530.6p  transcript_id AT4G15530.6  protein_id AT4G15530.6p  transcript_id AT4G15530.6  
At4g15540	chr4:008873394	0.0	W/8873394-8873599,8873679-8873744,8873820-8873933,8874138-8874348,8874447-8874605,8874673-8874824,8875051-8875186	AT4G15540.1  CDS  gene_syn DL3810W, FCAALL.328  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: nodulin-related (TAIR:AT5G40230.1); Has 1698 Blast hits to 1688 proteins in 326 species: Archae - 14; Bacteria - 809; Metazoa - 6; Fungi - 0; Plants - 633; Viruses - 0; Other Eukaryotes - 236 (source: NCBI BLink).  protein_id AT4G15540.1p  transcript_id AT4G15540.1  protein_id AT4G15540.1p  transcript_id AT4G15540.1  
At4g15545	chr4:008875932	0.0	W/8875932-8876243,8876331-8876399,8876500-8876553,8876643-8876682,8876769-8876867,8876950-8877174,8877257-8877378,8877475-8877567	AT4G15545.1  CDS  product unknown protein  note unknown protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16520.1); Has 557 Blast hits to 539 proteins in 129 species: Archae - 0; Bacteria - 87; Metazoa - 242; Fungi - 51; Plants - 82; Viruses - 2; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT4G15545.1p  transcript_id AT4G15545.1  protein_id AT4G15545.1p  transcript_id AT4G15545.1  
At4g15550	chr4:008877877	0.0	C/8877877-8879301	AT4G15550.1  CDS  gene_syn DL3815C, FCAALL.103, IAGLU, INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE, UDP-GLUCOSE:INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE  gene IAGLU  function UDP-glucose:indole-3-acetate beta-D-glucosyltransferase  go_component chloroplast|GO:0009507||IEA  go_process metabolic process|GO:0008152||IEA  go_function UDP-glycosyltransferase activity|GO:0008194|11283335|ISS  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE); UDP-glycosyltransferase/ transferase, transferring glycosyl groups  note INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE (IAGLU); FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT75B1 (UDP-GLUCOSYLTRANSFERASE 75B1); UDP-glucose:4-aminobenzoate acylglucosyltransferase/ UDP-glucosyltransferase/ UDP-glycosyltransferase/ abscisic acid glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT1G05560.1); Has 4097 Blast hits to 4073 proteins in 328 species: Archae - 0; Bacteria - 165; Metazoa - 1101; Fungi - 24; Plants - 2690; Viruses - 97; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT4G15550.1p  transcript_id AT4G15550.1  protein_id AT4G15550.1p  transcript_id AT4G15550.1  
At4g15560	chr4:008884218	0.0	W/8884218-8884367,8884651-8884776,8884860-8885175,8885282-8885553,8885641-8885914,8885992-8886299,8886382-8886663,8886742-8887026,8887114-8887254	AT4G15560.1  CDS  gene_syn 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE, 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLA, CLA1, CLOROPLASTOS ALTERADOS 1, DEF, DL3821W, DXPS2, DXS, FCAALL.24  gene CLA1  function Encodes a protein with 1-deoxyxylulose 5-phosphate synthase activity involved in the MEP pathway. It is essential for chloroplast development in Arabidopsis  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to light stimulus|GO:0009416|15863698|IEP  go_process chlorophyll biosynthetic process|GO:0015995|10982425|IMP  go_process isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway|GO:0019288|12777052|TAS  go_function 1-deoxy-D-xylulose-5-phosphate synthase activity|GO:0008661|10982425|IDA  product CLA1 (CLOROPLASTOS ALTERADOS 1); 1-deoxy-D-xylulose-5-phosphate synthase  note CLOROPLASTOS ALTERADOS 1 (CLA1); FUNCTIONS IN: 1-deoxy-D-xylulose-5-phosphate synthase activity; INVOLVED IN: chlorophyll biosynthetic process, response to light stimulus, isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, N-terminal (InterPro:IPR005474), Transketolase, C-terminal (InterPro:IPR005476), Deoxyxylulose-5-phosphate synthase (InterPro:IPR005477), Transketolase C-terminal-like (InterPro:IPR015941), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase, central region (InterPro:IPR005475); BEST Arabidopsis thaliana protein match is: 1-deoxy-D-xylulose-5-phosphate synthase (TAIR:AT3G21500.2); Has 16621 Blast hits to 16583 proteins in 1665 species: Archae - 151; Bacteria - 8009; Metazoa - 428; Fungi - 173; Plants - 266; Viruses - 0; Other Eukaryotes - 7594 (source: NCBI BLink).  protein_id AT4G15560.1p  transcript_id AT4G15560.1  protein_id AT4G15560.1p  transcript_id AT4G15560.1  
At4g15563	chr4:008891771	0.0	W/8891771-8891998,8892073-8892348	AT4G15563.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G15563.1p  transcript_id AT4G15563.1  protein_id AT4G15563.1p  transcript_id AT4G15563.1  
At4g15570	chr4:008893043	0.0	W/8893043-8893150,8893242-8893386,8893594-8893727,8893861-8894082,8894355-8894546,8894639-8894674,8895068-8895153,8895263-8895313,8895557-8895668,8895768-8895873,8895954-8896051,8896290-8896391,8896483-8896575,8896926-8896979,8897258-8897316,8897423-8897507,8897695-8898066,8898241-8898363,8898484-8898570,8898667-8898858	AT4G15570.1  CDS  gene_syn DL3825W, FCAALL.334, MAA3, MAGATAMA 3  gene MAA3  function Similar to yeast Sen1 (splicing endonuclease 1)helicase protein. Involved in female gametophyte development.  go_component cellular_component|GO:0005575||ND  go_process embryo sac development|GO:0009553|11003848|IMP  go_process pollen-pistil interaction|GO:0009875|11003848|IMP  go_process pollen tube guidance|GO:0010183|11003848|IMP  go_function molecular_function|GO:0003674||ND  go_process embryo sac development|GO:0009553|18772186|IMP  product MAA3 (MAGATAMA 3)  note MAGATAMA 3 (MAA3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen-pistil interaction, pollen tube guidance, embryo sac development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001); BEST Arabidopsis thaliana protein match is: tRNA-splicing endonuclease positive effector-related (TAIR:AT4G30100.1); Has 4408 Blast hits to 3982 proteins in 780 species: Archae - 148; Bacteria - 943; Metazoa - 1149; Fungi - 712; Plants - 309; Viruses - 314; Other Eukaryotes - 833 (source: NCBI BLink).  protein_id AT4G15570.1p  transcript_id AT4G15570.1  protein_id AT4G15570.1p  transcript_id AT4G15570.1  
At4g15590	chr4:008900245	0.0	C/8900245-8907255	AT4G15590.1  mRNA_TE_gene  pseudo  gene_syn DL3835C, FCAALL.338  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.5e-50 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)  
At4g15610	chr4:008909162	0.0	W/8909162-8909394,8910135-8910261,8910420-8910641	AT4G15610.1  CDS  gene_syn DL3845W, FCAALL.139  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane family protein  note integral membrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT3G06390.1); Has 301 Blast hits to 301 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 301; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G15610.1p  transcript_id AT4G15610.1  protein_id AT4G15610.1p  transcript_id AT4G15610.1  
At4g15620	chr4:008913935	0.0	W/8913935-8914176,8915201-8915531	AT4G15620.1  CDS  gene_syn DL3850W, FCAALL.348  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane family protein  note integral membrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT4G15630.1); Has 281 Blast hits to 281 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G15620.1p  transcript_id AT4G15620.1  protein_id AT4G15620.1p  transcript_id AT4G15620.1  
At4g15630	chr4:008917527	0.0	W/8917527-8917768,8918353-8918683	AT4G15630.1  CDS  gene_syn DL3855W, FCAALL.230  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane family protein  note integral membrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT4G15620.1); Has 298 Blast hits to 298 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 298; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G15630.1p  transcript_id AT4G15630.1  protein_id AT4G15630.1p  transcript_id AT4G15630.1  
At4g15640	chr4:008921699	0.0	C/8921699-8921852,8921316-8921411,8921082-8921236,8920886-8920979,8920691-8920761,8920504-8920610,8920278-8920399,8919795-8919883,8919657-8919716,8919448-8919552,8919245-8919364	AT4G15640.1  CDS  gene_syn DL3860C, FCAALL.350  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G21465.1); Has 24 Blast hits to 24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G15640.1p  transcript_id AT4G15640.1  protein_id AT4G15640.1p  transcript_id AT4G15640.1  
At4g15650	chr4:008922632	0.0	W/8922632-8923040,8923298-8923665	AT4G15650.1  CDS  gene_syn DL3865W, FCAALL.351  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product protein kinase-related  note protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; Has 4614 Blast hits to 2924 proteins in 397 species: Archae - 14; Bacteria - 617; Metazoa - 1547; Fungi - 616; Plants - 167; Viruses - 110; Other Eukaryotes - 1543 (source: NCBI BLink).  protein_id AT4G15650.1p  transcript_id AT4G15650.1  protein_id AT4G15650.1p  transcript_id AT4G15650.1  
At4g15660	chr4:008925928	0.0	W/8925928-8926236	AT4G15660.1  CDS  gene_syn DL3870W, FCAALL.353  go_component endomembrane system|GO:0012505||IEA  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  go_function arsenate reductase (glutaredoxin) activity|GO:0008794||ISS  product glutaredoxin family protein  note glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutaredoxin subgroup (InterPro:IPR014025), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin family protein (TAIR:AT4G15670.1); Has 1023 Blast hits to 1020 proteins in 160 species: Archae - 0; Bacteria - 15; Metazoa - 367; Fungi - 164; Plants - 424; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT4G15660.1p  transcript_id AT4G15660.1  protein_id AT4G15660.1p  transcript_id AT4G15660.1  
At4g15670	chr4:008929237	0.0	W/8929237-8929545	AT4G15670.1  CDS  gene_syn DL3875W, FCAALL.355  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  go_component cellular_component|GO:0005575||ND  go_function arsenate reductase (glutaredoxin) activity|GO:0008794||ISS  product glutaredoxin family protein  note glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Glutaredoxin (InterPro:IPR002109), Glutaredoxin subgroup (InterPro:IPR014025), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin family protein (TAIR:AT4G15680.1); Has 1102 Blast hits to 1099 proteins in 166 species: Archae - 0; Bacteria - 16; Metazoa - 422; Fungi - 180; Plants - 423; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT4G15670.1p  transcript_id AT4G15670.1  protein_id AT4G15670.1p  transcript_id AT4G15670.1  
At4g15680	chr4:008931813	0.0	W/8931813-8932121	AT4G15680.1  CDS  gene_syn DL3880W, FCAALL.384  go_component endomembrane system|GO:0012505||IEA  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  go_function arsenate reductase (glutaredoxin) activity|GO:0008794||ISS  product glutaredoxin family protein  note glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutaredoxin subgroup (InterPro:IPR014025), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin family protein (TAIR:AT4G15670.1); Has 1219 Blast hits to 1216 proteins in 173 species: Archae - 0; Bacteria - 26; Metazoa - 433; Fungi - 222; Plants - 431; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT4G15680.1p  transcript_id AT4G15680.1  protein_id AT4G15680.1p  transcript_id AT4G15680.1  
At4g15690	chr4:008934444	0.0	W/8934444-8934752	AT4G15690.1  CDS  gene_syn DL3885W, FCAALL.357  go_component endomembrane system|GO:0012505||IEA  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  go_function arsenate reductase (glutaredoxin) activity|GO:0008794||ISS  product glutaredoxin family protein  note glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutaredoxin subgroup (InterPro:IPR014025), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin family protein (TAIR:AT4G15680.1); Has 1151 Blast hits to 1148 proteins in 167 species: Archae - 0; Bacteria - 22; Metazoa - 406; Fungi - 216; Plants - 427; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT4G15690.1p  transcript_id AT4G15690.1  protein_id AT4G15690.1p  transcript_id AT4G15690.1  
At4g15700	chr4:008937545	0.0	W/8937545-8937853	AT4G15700.1  CDS  gene_syn DL3890W, FCAALL.358  go_component endomembrane system|GO:0012505||IEA  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  go_function arsenate reductase (glutaredoxin) activity|GO:0008794||ISS  product glutaredoxin family protein  note glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutaredoxin subgroup (InterPro:IPR014025), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin family protein (TAIR:AT4G15690.1); Has 1174 Blast hits to 1171 proteins in 175 species: Archae - 0; Bacteria - 30; Metazoa - 420; Fungi - 217; Plants - 427; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT4G15700.1p  transcript_id AT4G15700.1  protein_id AT4G15700.1p  transcript_id AT4G15700.1  
At4g15710	chr4:008940292	0.0	W/8940292-8940519,8940661-8940858	AT4G15710.1  CDS  gene_syn DL3895W, FCAALL.366  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; Has 10 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G15710.1p  transcript_id AT4G15710.1  protein_id AT4G15710.1p  transcript_id AT4G15710.1  
At4g15715	chr4:008945317	0.0	W/8945317-8945673	AT4G15715.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56920.1); Has 26 Blast hits to 26 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G15715.1p  transcript_id AT4G15715.1  protein_id AT4G15715.1p  transcript_id AT4G15715.1  
At4g15720	chr4:008949569	0.0	W/8949569-8951419	AT4G15720.1  CDS  gene_syn DL3900W, FCAALL.369  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G23330.1); Has 12291 Blast hits to 4744 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 17; Plants - 12032; Viruses - 0; Other Eukaryotes - 202 (source: NCBI BLink).  protein_id AT4G15720.1p  transcript_id AT4G15720.1  protein_id AT4G15720.1p  transcript_id AT4G15720.1  
At4g15730	chr4:008957125	0.0	C/8957125-8957214,8956596-8956665,8956390-8956517,8955867-8956223,8955060-8955769,8954342-8954727,8953513-8954255,8953184-8953341,8952863-8953023,8952303-8952460,8951887-8952105	AT4G15730.1  CDS  gene_syn DL3905C, FCAALL.370  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT3G62900.1); Has 243 Blast hits to 205 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT4G15730.1p  transcript_id AT4G15730.1  protein_id AT4G15730.1p  transcript_id AT4G15730.1  
At4g15733	chr4:008961720	0.0	W/8961720-8961789,8961929-8962119	AT4G15733.1  CDS  gene_syn SCR-Like 11, SCRL11  gene SCRL11  function Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).  go_component endomembrane system|GO:0012505||IEA  product SCRL11 (SCR-Like 11)  note SCR-Like 11 (SCRL11); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: SCRL10 (SCR-Like 10) (TAIR:AT4G15735.1); Has 26 Blast hits to 26 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G15733.1p  transcript_id AT4G15733.1  protein_id AT4G15733.1p  transcript_id AT4G15733.1  
At4g15735	chr4:008963085	0.0	W/8963085-8963154,8963262-8963515	AT4G15735.1  CDS  gene_syn SCR-Like 10, SCRL10  gene SCRL10  function Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SCRL10 (SCR-Like 10)  note SCR-Like 10 (SCRL10); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: SCRL9 (SCR-Like 9) (TAIR:AT2G05117.1); Has 28 Blast hits to 28 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G15735.1p  transcript_id AT4G15735.1  protein_id AT4G15735.1p  transcript_id AT4G15735.1  
At4g15740	chr4:008964912	0.0	C/8964912-8966318	AT4G15740.1  CDS  gene_syn DL3910C, FCAALL.373  go_component cellular_component|GO:0005575||ND  product C2 domain-containing protein  note C2 domain-containing protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: root, pollen tube; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT3G16510.1); Has 441 Blast hits to 295 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 26; Plants - 370; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT4G15740.1p  transcript_id AT4G15740.1  protein_id AT4G15740.1p  transcript_id AT4G15740.1  
At4g15750	chr4:008968331	0.0	C/8968331-8968548,8967703-8968000	AT4G15750.1  CDS  gene_syn DL3915C, FCAALL.95  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, embryo, male gametophyte, sepal, pedicel; EXPRESSED DURING: L mature pollen stage, 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: pectinesterase inhibitor domain-containing protein (TAIR:AT1G56100.2); Has 36 Blast hits to 36 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G15750.1p  transcript_id AT4G15750.1  protein_id AT4G15750.1p  transcript_id AT4G15750.1  
At4g15755	chr4:008970654	0.0	C/8970654-8971523	AT4G15755.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT3G16510.1); Has 262 Blast hits to 259 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 24; Plants - 228; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G15755.1p  transcript_id AT4G15755.1  protein_id AT4G15755.1p  transcript_id AT4G15755.1  
At4g15760	chr4:008974403	0.0	C/8974403-8974548,8974161-8974307,8974009-8974065,8973684-8973849,8972785-8973537	AT4G15760.1  CDS  gene_syn DL3920C, FCAALL.376, MO1, MONOOXYGENASE 1  gene MO1  function Encodes a protein with similarity to monooxygenases that are known to degrade salicylic acid (SA).  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process response to bacterium|GO:0009617|19296849|IEP  product MO1 (MONOOXYGENASE 1); electron carrier/ oxidoreductase  note MONOOXYGENASE 1 (MO1); FUNCTIONS IN: electron carrier activity, oxidoreductase activity; INVOLVED IN: response to bacterium; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: Aromatic-ring hydroxylase-like (InterPro:IPR003042), Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal (InterPro:IPR003953); BEST Arabidopsis thaliana protein match is: electron carrier/ monooxygenase/ oxidoreductase (TAIR:AT4G15765.1); Has 1866 Blast hits to 1865 proteins in 447 species: Archae - 0; Bacteria - 984; Metazoa - 17; Fungi - 248; Plants - 262; Viruses - 0; Other Eukaryotes - 355 (source: NCBI BLink).  protein_id AT4G15760.1p  transcript_id AT4G15760.1  protein_id AT4G15760.1p  transcript_id AT4G15760.1  
At4g15765	chr4:008977141	0.0	C/8977141-8977211,8976973-8977038,8976615-8976813,8976133-8976361,8975783-8976033	AT4G15765.1  CDS  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function monooxygenase activity|GO:0004497||ISS  product electron carrier/ monooxygenase/ oxidoreductase  note electron carrier/ monooxygenase/ oxidoreductase; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, monooxygenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal (InterPro:IPR003953); BEST Arabidopsis thaliana protein match is: MO1 (MONOOXYGENASE 1); electron carrier/ oxidoreductase (TAIR:AT4G15760.1); Has 115 Blast hits to 115 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G15765.1p  transcript_id AT4G15765.1  protein_id AT4G15765.1p  transcript_id AT4G15765.1  
At4g15770	chr4:008978060	0.0	W/8978060-8978623	AT4G15770.1  CDS  gene_syn DL3925W, FCAALL.377  go_component nucleus|GO:0005634||IEA  go_process ribosome assembly|GO:0042255||IEA  go_function RNA binding|GO:0003723||IEA  go_function protein binding|GO:0005515||IEA  go_process ribosome biogenesis|GO:0042254||ISS  product RNA binding / protein binding  note RNA binding / protein binding; FUNCTIONS IN: protein binding, RNA binding; INVOLVED IN: ribosome assembly, ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PUA-like (InterPro:IPR015947), PUA (InterPro:IPR002478), Ribosome biogenesis factor, NIP7 (InterPro:IPR016686); Has 303 Blast hits to 303 proteins in 149 species: Archae - 3; Bacteria - 0; Metazoa - 115; Fungi - 87; Plants - 22; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT4G15770.1p  transcript_id AT4G15770.1  protein_id AT4G15770.1p  transcript_id AT4G15770.1  
At4g15775	chr4:008979656	0.0	W/8979656-8979728	AT4G15775.1  tRNA  gene_syn 68169.TRNA-LYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Lys (anticodon: CTT)  transcript_id AT4G15775.1  
At4g15780	chr4:008981505	0.0	C/8981505-8981697,8980735-8980876,8980530-8980650,8980320-8980382,8980081-8980232	AT4G15780.1  CDS  gene_syn ATVAMP724, DL3930C, FCAALL.378, VAMP724, VESICLE-ASSOCIATED MEMBRANE PROTEIN 724  gene ATVAMP724  function member of VAMP72 Gene Family  go_process transport|GO:0006810||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_component plasma membrane|GO:0005886|15876431|TAS  go_function molecular_function|GO:0003674||ND  product ATVAMP724  note ATVAMP724; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: ATVAMP726 (TAIR:AT1G04760.1); Has 1034 Blast hits to 1033 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 403; Fungi - 125; Plants - 308; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink).  protein_id AT4G15780.1p  transcript_id AT4G15780.1  protein_id AT4G15780.1p  transcript_id AT4G15780.1  
At4g15790	chr4:008982390	0.0	W/8982390-8982458,8983153-8983191,8983284-8983337,8983437-8983490,8983615-8983668,8983763-8983834,8983968-8984069	AT4G15790.1  CDS  gene_syn DL3935W, FCAALL.69  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 379 Blast hits to 339 proteins in 97 species: Archae - 2; Bacteria - 84; Metazoa - 93; Fungi - 24; Plants - 32; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).  protein_id AT4G15790.1p  transcript_id AT4G15790.1  protein_id AT4G15790.1p  transcript_id AT4G15790.1  
At4g15800	chr4:008984915	0.0	W/8984915-8985265	AT4G15800.1  CDS  gene_syn DL3940C, FCAALL.206, RALFL33, ralf-like 33  gene RALFL33  function Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_component apoplast|GO:0048046|12611624|ISS  go_process cell-cell signaling|GO:0007267|12611624|ISS  go_function signal transducer activity|GO:0004871|12611624|TAS  product RALFL33 (ralf-like 33); signal transducer  note ralf-like 33 (RALFL33); FUNCTIONS IN: signal transducer activity; INVOLVED IN: cell-cell signaling; LOCATED IN: apoplast, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALFL23 (ralf-like 23); signal transducer (TAIR:AT3G16570.1); Has 153 Blast hits to 153 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 151; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G15800.1p  transcript_id AT4G15800.1  protein_id AT4G15800.1p  transcript_id AT4G15800.1  
At4g15802	chr4:008988337	0.0	C/8988337-8988339,8987672-8987725,8987556-8987579,8987419-8987461,8986864-8987000	AT4G15802.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heat shock factor binding 1 (InterPro:IPR009643); Has 178 Blast hits to 178 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT4G15802.1p  transcript_id AT4G15802.1  protein_id AT4G15802.1p  transcript_id AT4G15802.1  
At4g15810	chr4:008992462	0.0	C/8992462-8992591,8992174-8992349,8991949-8991991,8990809-8991859,8990078-8990722,8989162-8989813	AT4G15810.1  CDS  gene_syn DL3945C, FCAALL.392  go_function GTP binding|GO:0005525||IEA  go_component chloroplast outer membrane|GO:0009707||ISS  go_process biological_process|GO:0008150||ND  product GTP binding  note GTP binding; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast outer membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703); BEST Arabidopsis thaliana protein match is: TOC159 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 159); transmembrane receptor (TAIR:AT4G02510.1); Has 1506 Blast hits to 1313 proteins in 307 species: Archae - 7; Bacteria - 528; Metazoa - 406; Fungi - 92; Plants - 214; Viruses - 0; Other Eukaryotes - 259 (source: NCBI BLink).  protein_id AT4G15810.1p  transcript_id AT4G15810.1  protein_id AT4G15810.1p  transcript_id AT4G15810.1  
At4g15820	chr4:008992970	0.0	W/8992970-8993047,8993134-8993860,8994152-8994384,8994514-8994723,8994888-8995022	AT4G15820.1  CDS  gene_syn DL3950W, FCAALL.395  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: emb1703 (embryo defective 1703) (TAIR:AT3G61780.1); Has 482 Blast hits to 408 proteins in 85 species: Archae - 0; Bacteria - 7; Metazoa - 192; Fungi - 38; Plants - 25; Viruses - 3; Other Eukaryotes - 217 (source: NCBI BLink).  protein_id AT4G15820.1p  transcript_id AT4G15820.1  protein_id AT4G15820.1p  transcript_id AT4G15820.1  
At4g15830	chr4:008996357	0.0	C/8996357-8996548,8996172-8996278,8995943-8996090,8995633-8995827,8995285-8995533	AT4G15830.1  CDS  gene_syn DL3955C, FCAALL.419  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT3G01450.1); Has 183 Blast hits to 183 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 89; Fungi - 5; Plants - 61; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT4G15830.1p  transcript_id AT4G15830.1  protein_id AT4G15830.1p  transcript_id AT4G15830.1  
At4g15840	chr4:008996963	0.0	W/8996963-8997261,8997349-8997532,8997616-8997684,8997773-8997871,8998154-8998233,8998327-8999056,8999256-8999893,9000018-9000102,9000209-9000260,9000356-9000405,9000501-9000548,9000676-9000852	AT4G15840.1  CDS  gene_syn DL3960W, FCAALL.399  go_function protein binding|GO:0005515||IEA  go_process biological_process|GO:0008150||ND  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); Has 305 Blast hits to 303 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 265; Fungi - 12; Plants - 22; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G15840.1p  transcript_id AT4G15840.1  protein_id AT4G15840.1p  transcript_id AT4G15840.1  
At4g15850	chr4:009001426	0.0	W/9001426-9001547,9001987-9002221,9002310-9002564,9002645-9002799,9002930-9003107,9003215-9003402,9003503-9003707,9004035-9004140,9004410-9004534	AT4G15850.1  CDS  gene_syn ATRH1, DL3965W, FCAALL.401  gene ATRH1  function plant DEAD box-like RNA helicase.  go_function ATP-dependent helicase activity|GO:0008026||ISS  go_function DEAD/H-box RNA helicase binding|GO:0017151|9358062|TAS  product ATRH1; ATP-dependent helicase/ DEAD/H-box RNA helicase binding  note ATRH1; FUNCTIONS IN: DEAD/H-box RNA helicase binding, ATP-dependent helicase activity; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (RH28) (TAIR:AT4G16630.1); Has 25418 Blast hits to 24984 proteins in 1678 species: Archae - 393; Bacteria - 10158; Metazoa - 4597; Fungi - 3245; Plants - 1363; Viruses - 13; Other Eukaryotes - 5649 (source: NCBI BLink).  protein_id AT4G15850.1p  transcript_id AT4G15850.1  protein_id AT4G15850.1p  transcript_id AT4G15850.1  
At4g15860	chr4:009006327	0.0	C/9006327-9008167	AT4G15860.1  mRNA_TE_gene  pseudo  gene_syn DL3970C, FCAALL.403  note Transposable element gene, copia-like retrotransposon family, has a 2.3e-43 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element)  
At4g15870	chr4:009010681	0.0	C/9010681-9010947,9010313-9010592,9009859-9010237,9009554-9009775,9009097-9009238,9008758-9008967,9008372-9008668	AT4G15870.1  CDS  gene_syn ATTS1, DL3975C, FCAALL.405  gene ATTS1  function encodes a putative terpene synthase  go_component chloroplast|GO:0009507||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function lyase activity|GO:0016829||IEA  go_process terpene biosynthetic process|GO:0046246|9358062|ISS  product ATTS1; lyase/ magnesium ion binding  note ATTS1; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: terpene biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase/cyclase family protein (TAIR:AT2G23230.1); Has 1064 Blast hits to 1055 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1061; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G15870.1p  transcript_id AT4G15870.1  protein_id AT4G15870.1p  transcript_id AT4G15870.1  
At4g15880	chr4:009012769	0.0	W/9012769-9013518,9013820-9013896,9013977-9014070,9014155-9014253,9014550-9014639,9014738-9014857,9015105-9015208,9015501-9015573,9015735-9015797	AT4G15880.1  CDS  gene_syn DL3980W, EARLY IN SHORT DAYS 4, ESD4, FCAALL.406  gene ESD4  function EARLY IN SHORT DAYS 4 Arabidopsis mutant shows extreme early flowering and alterations in shoot development. It encodes a SUMO protease, located predominantly at the periphery of the nucleus. Accelerates the transition from vegetative growth to flowering. Probably acts in the same pathway as NUA in affecting flowering time, vegetative and inflorescence development.  go_component nucleus|GO:0005634|14507998|IDA  go_process proteolysis|GO:0006508||ISS  go_process regulation of flower development|GO:0009909|14507998|IMP  go_process positive regulation of flower development|GO:0009911|14507998|IMP  go_function cysteine-type peptidase activity|GO:0008234||ISS  go_function SUMO-specific protease activity|GO:0016929|14507998|IDA  product ESD4 (EARLY IN SHORT DAYS 4); SUMO-specific protease/ cysteine-type peptidase  note EARLY IN SHORT DAYS 4 (ESD4); FUNCTIONS IN: cysteine-type peptidase activity, SUMO-specific protease activity; INVOLVED IN: proteolysis, positive regulation of flower development, regulation of flower development; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: ULP1A (UB-LIKE PROTEASE 1A); SUMO-specific protease/ cysteine-type peptidase (TAIR:AT3G06910.1); Has 1077 Blast hits to 1067 proteins in 157 species: Archae - 0; Bacteria - 6; Metazoa - 537; Fungi - 176; Plants - 213; Viruses - 5; Other Eukaryotes - 140 (source: NCBI BLink).  protein_id AT4G15880.1p  transcript_id AT4G15880.1  protein_id AT4G15880.1p  transcript_id AT4G15880.1  
At4g15885	chr4:009016886	0.0	C/9016886-9016978,9016691-9016756,9016451-9016633	AT4G15885.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kinesin motor protein-related  note kinesin motor protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: KINESIN-13A; ATP binding / microtubule motor (TAIR:AT3G16630.2); Has 144 Blast hits to 144 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 58; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT4G15885.1p  transcript_id AT4G15885.1  protein_id AT4G15885.1p  transcript_id AT4G15885.1  
At4g15890	chr4:009017453	0.0	W/9017453-9018910,9019222-9019759,9019924-9020105,9020354-9020845,9021007-9021098,9021177-9021264,9021354-9021468,9021592-9021724,9021823-9021997,9022074-9022745	AT4G15890.1  CDS  gene_syn DL3985W, FCAALL.407  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chromosome condensation protein, HCP-6-related (InterPro:IPR012371), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT3G57060.1); Has 316 Blast hits to 307 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 160; Fungi - 87; Plants - 21; Viruses - 3; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT4G15890.1p  transcript_id AT4G15890.1  protein_id AT4G15890.1p  transcript_id AT4G15890.1  
At4g15900	chr4:009023775	0.0	W/9023775-9023908,9024003-9024027,9024266-9024371,9024486-9024579,9024684-9024749,9024943-9025027,9025145-9025237,9025452-9025515,9025628-9025713,9025784-9025885,9025988-9026071,9026174-9026234,9026364-9026430,9026552-9026629,9026749-9026813,9026928-9027005,9027271-9027443	AT4G15900.1  CDS  gene_syn DL3990W, FCAALL.40, PLEIOTROPIC REGULATORY LOCUS 1, PRL1, PRL1 PROTEIN  gene PRL1  function Mutations confer hypersensitivity to glucose and sucrose and augments sensitivity to cytokinin, ethylene, ABA and auxin. Encodes a nuclear WD40 protein that is imported into the nucleus. Essential for plant innate immunity. Interacts with MOS4 and AtCDC5. It is also predicted to have two DWD motifs. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase, and may affect the stability of AKIN10.  go_component nucleus|GO:0005634|9765207|IDA  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|IPI  go_process proteolysis|GO:0006508|18223036|IMP  go_process response to glucose stimulus|GO:0009749|9765207|IMP  go_process hormone-mediated signaling|GO:0009755|18223036|IMP  go_process defense response signaling pathway, resistance gene-dependent|GO:0009870|17575050|IMP  go_process fruit development|GO:0010154|18223036|IMP  go_process sugar mediated signaling|GO:0010182|18223036|IMP  go_process defense response signaling pathway, resistance gene-independent|GO:0010204|17575050|IMP  go_process negative regulation of transcription|GO:0016481|10220464|IMP  go_process defense response to bacterium|GO:0042742|17575050|IMP  go_process root development|GO:0048364|18223036|IMP  go_process leaf development|GO:0048366|18223036|IMP  go_process cotyledon development|GO:0048825|18223036|IMP  go_process defense response to fungus|GO:0050832|17575050|IMP  go_function nucleotide binding|GO:0000166||ISS  go_function protein binding|GO:0005515|10220464|IPI  go_function protein binding|GO:0005515|18223036|IPI  go_function basal transcription repressor activity|GO:0017163|9765207|IMP  go_function basal transcription repressor activity|GO:0017163|9765207|ISS  product PRL1 (PLEIOTROPIC REGULATORY LOCUS 1); basal transcription repressor/ nucleotide binding / protein binding  note PLEIOTROPIC REGULATORY LOCUS 1 (PRL1); FUNCTIONS IN: protein binding, basal transcription repressor activity, nucleotide binding; INVOLVED IN: in 13 processes; LOCATED IN: nucleus, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: PP1/PP2A phosphatases pleiotropic regulator 2 (PRL2) (TAIR:AT3G16650.1); Has 62891 Blast hits to 25334 proteins in 648 species: Archae - 44; Bacteria - 6402; Metazoa - 29302; Fungi - 11995; Plants - 5906; Viruses - 0; Other Eukaryotes - 9242 (source: NCBI BLink).  protein_id AT4G15900.1p  transcript_id AT4G15900.1  protein_id AT4G15900.1p  transcript_id AT4G15900.1  
At4g15910	chr4:009028657	0.0	W/9028657-9028739,9029038-9029269	AT4G15910.1  CDS  gene_syn ARABIDOPSIS THALIANA DROUGHT-INDUCED 21, ATDI21, DI21, DL3995W, DROUGHT-INDUCED 21, FCAALL.235  gene ATDI21  function encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants.  go_process response to water deprivation|GO:0009414|7823904|IEP  go_process response to abscisic acid stimulus|GO:0009737|7823904|IGI  go_process embryonic development|GO:0009790||ISS  go_function molecular_function|GO:0003674||ND  product ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21)  note ARABIDOPSIS THALIANA DROUGHT-INDUCED 21 (ATDI21); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development, response to water deprivation, response to abscisic acid stimulus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein 3 (InterPro:IPR004926); BEST Arabidopsis thaliana protein match is: SAG21 (SENESCENCE-ASSOCIATED GENE 21) (TAIR:AT4G02380.1); Has 76 Blast hits to 76 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G15910.1p  transcript_id AT4G15910.1  protein_id AT4G15910.1p  transcript_id AT4G15910.1  
At4g15920	chr4:009033310	0.0	C/9033310-9033343,9033172-9033208,9032851-9033061,9032328-9032492,9031453-9031572,9030742-9030900	AT4G15920.1  CDS  gene_syn DL4000C, FCAALL.237  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MtN3 and saliva related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), MtN3 and saliva related transmembrane protein (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: nodulin MtN3 family protein (TAIR:AT3G16690.1); Has 546 Blast hits to 527 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 194; Fungi - 0; Plants - 300; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT4G15920.1p  transcript_id AT4G15920.1  protein_id AT4G15920.1p  transcript_id AT4G15920.1  
At4g15930	chr4:009036344	0.0	W/9036344-9036526,9036913-9037018,9037743-9037825	AT4G15930.1  CDS  gene_syn DL4005W, FCAALL.238  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based process|GO:0007017||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_component microtubule associated complex|GO:0005875||ISS  go_process microtubule-based process|GO:0007017||ISS  go_function microtubule motor activity|GO:0003777||ISS  product microtubule motor  note microtubule motor; FUNCTIONS IN: microtubule motor activity; INVOLVED IN: microtubule-based process; LOCATED IN: microtubule associated complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dynein light chain, type 1 and 2 (InterPro:IPR001372); BEST Arabidopsis thaliana protein match is: dynein light chain, putative (TAIR:AT5G20110.1); Has 980 Blast hits to 980 proteins in 172 species: Archae - 0; Bacteria - 0; Metazoa - 538; Fungi - 74; Plants - 124; Viruses - 0; Other Eukaryotes - 244 (source: NCBI BLink).  protein_id AT4G15930.1p  transcript_id AT4G15930.1  protein_id AT4G15930.1p  transcript_id AT4G15930.1  
At4g15940	chr4:009038361	0.0	W/9038361-9038468,9038594-9038759,9038838-9038890,9039251-9039313,9039706-9039756,9039856-9039970,9040051-9040163	AT4G15940.1  CDS  gene_syn DL4011W, FCAALL.203  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process metabolic process|GO:0008152||ISS  go_function catalytic activity|GO:0003824||ISS  product fumarylacetoacetate hydrolase family protein  note fumarylacetoacetate hydrolase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Fumarylacetoacetase, C-terminal-like (InterPro:IPR002529), Fumarylacetoacetase, C-terminal-related (InterPro:IPR011234); BEST Arabidopsis thaliana protein match is: fumarylacetoacetate hydrolase family protein (TAIR:AT3G16700.1); Has 7514 Blast hits to 7414 proteins in 1058 species: Archae - 130; Bacteria - 3791; Metazoa - 261; Fungi - 272; Plants - 46; Viruses - 0; Other Eukaryotes - 3014 (source: NCBI BLink).  protein_id AT4G15940.1p  transcript_id AT4G15940.1  protein_id AT4G15940.1p  transcript_id AT4G15940.1  
At4g15950	chr4:009040743	0.0	W/9040743-9040794,9040882-9040917,9041047-9041184,9041475-9041605,9041758-9041883	AT4G15950.1  CDS  gene_syn DL4012W, FCAALL.240, NRPD4, NRPE4  gene NRPD4  function Non-catalytic subunit common to Nuclear DNA-dependent RNA polymerases IV and V; homologous to budding yeast RPB4  go_component DNA-directed RNA polymerase IV complex|GO:0000418|19110459|IPI  go_component DNA-directed RNA polymerase V complex|GO:0080137|19110459|IPI  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NRPD4  note NRPD4; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: DNA-directed RNA polymerase V complex, DNA-directed RNA polymerase IV complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 21 Blast hits to 21 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G15950.1p  transcript_id AT4G15950.1  protein_id AT4G15950.1p  transcript_id AT4G15950.1  
At4g15953	chr4:009042897	0.0	W/9042897-9042960,9043078-9043337	AT4G15953.1  CDS  function Encodes a Maternally expressed gene (MEG) family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G50345.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G15953.1p  transcript_id AT4G15953.1  protein_id AT4G15953.1p  transcript_id AT4G15953.1  
At4g15955	chr4:009045044	0.0	C/9045044-9045544,9044083-9044118	AT4G15955.1  CDS  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  product epoxide hydrolase-related  note epoxide hydrolase-related; FUNCTIONS IN: catalytic activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: catalytic/ epoxide hydrolase (TAIR:AT4G15960.1); Has 8344 Blast hits to 8340 proteins in 906 species: Archae - 18; Bacteria - 5198; Metazoa - 496; Fungi - 293; Plants - 236; Viruses - 0; Other Eukaryotes - 2103 (source: NCBI BLink).  protein_id AT4G15955.1p  transcript_id AT4G15955.1  protein_id AT4G15955.1p  transcript_id AT4G15955.1  
At4g15955	chr4:009045044	0.0	C/9045044-9045544,9044649-9044699	AT4G15955.2  CDS  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  product epoxide hydrolase-related  note epoxide hydrolase-related; FUNCTIONS IN: catalytic activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: catalytic/ epoxide hydrolase (TAIR:AT4G15960.1); Has 8330 Blast hits to 8326 proteins in 907 species: Archae - 18; Bacteria - 5188; Metazoa - 496; Fungi - 290; Plants - 236; Viruses - 0; Other Eukaryotes - 2102 (source: NCBI BLink).  protein_id AT4G15955.2p  transcript_id AT4G15955.2  protein_id AT4G15955.2p  transcript_id AT4G15955.2  
At4g15955	chr4:009045044	0.0	C/9045044-9045544,9044756-9044795,9044498-9044624,9043872-9044118	AT4G15955.3  CDS  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  product epoxide hydrolase-related  note epoxide hydrolase-related; FUNCTIONS IN: catalytic activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: catalytic/ epoxide hydrolase (TAIR:AT4G15960.1).  protein_id AT4G15955.3p  transcript_id AT4G15955.3  protein_id AT4G15955.3p  transcript_id AT4G15955.3  
At4g15960	chr4:009046564	0.0	C/9046564-9047199,9046084-9046325,9045763-9046012	AT4G15960.1  CDS  gene_syn DL4016C, FCAALL.242  go_component mitochondrion|GO:0005739||IEA  go_function catalytic activity|GO:0003824||IEA  go_process biological_process|GO:0008150||ND  go_function epoxide hydrolase activity|GO:0004301||ISS  product catalytic/ epoxide hydrolase  note catalytic/ epoxide hydrolase; FUNCTIONS IN: epoxide hydrolase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: epoxide hydrolase-related (TAIR:AT4G15955.3); Has 8836 Blast hits to 8802 proteins in 965 species: Archae - 25; Bacteria - 5290; Metazoa - 511; Fungi - 315; Plants - 291; Viruses - 0; Other Eukaryotes - 2404 (source: NCBI BLink).  protein_id AT4G15960.1p  transcript_id AT4G15960.1  protein_id AT4G15960.1p  transcript_id AT4G15960.1  
At4g15970	chr4:009049390	0.0	W/9049390-9049461,9049930-9050304,9050741-9051370	AT4G15970.1  CDS  gene_syn DL4025W, FCAALL.245  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19970.1); Has 136 Blast hits to 130 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G15970.1p  transcript_id AT4G15970.1  protein_id AT4G15970.1p  transcript_id AT4G15970.1  
At4g15975	chr4:009052313	0.0	W/9052313-9053020	AT4G15975.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process response to chitin|GO:0010200|17722694|IEP  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: response to chitin; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: ATL2; protein binding / zinc ion binding (TAIR:AT3G16720.1); Has 651 Blast hits to 651 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 295; Fungi - 58; Plants - 253; Viruses - 2; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT4G15975.1p  transcript_id AT4G15975.1  protein_id AT4G15975.1p  transcript_id AT4G15975.1  
At4g15980	chr4:009059342	0.0	C/9059342-9059983,9058441-9059218,9057858-9058242,9057466-9057766	AT4G15980.1  CDS  gene_syn DL4030C, FCAALL.248  go_component apoplast|GO:0048046|18538804|IDA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: apoplast, plant-type cell wall; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT5G49180.1); Has 9875 Blast hits to 4055 proteins in 579 species: Archae - 72; Bacteria - 3430; Metazoa - 2473; Fungi - 914; Plants - 1262; Viruses - 32; Other Eukaryotes - 1692 (source: NCBI BLink).  protein_id AT4G15980.1p  transcript_id AT4G15980.1  protein_id AT4G15980.1p  transcript_id AT4G15980.1  
At4g15990	chr4:009061269	0.0	C/9061269-9061676	AT4G15990.1  CDS  gene_syn DL4035C, FCAALL.251  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16024.1); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G15990.1p  transcript_id AT4G15990.1  protein_id AT4G15990.1p  transcript_id AT4G15990.1  
At4g16000	chr4:009064163	0.0	C/9064163-9064432	AT4G16000.1  CDS  gene_syn DL4040C, FCAALL.25  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G15990.1); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G16000.1p  transcript_id AT4G16000.1  protein_id AT4G16000.1p  transcript_id AT4G16000.1  
At4g16008	chr4:009067898	0.0	W/9067898-9068134	AT4G16008.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G16008.1p  transcript_id AT4G16008.1  protein_id AT4G16008.1p  transcript_id AT4G16008.1  
At4g16010	chr4:009069355	0.0	W/9069355-9072903	AT4G16010.1  mRNA_TE_gene  pseudo  gene_syn DL4045W, FCAALL.262  note Transposable element gene, copia-like retrotransposon family, has a 3.9e-185 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)  
At4g16015	chr4:009073202	0.0	W/9073202-9074809	AT4G16015.1  CDS  go_process intracellular signaling cascade|GO:0007242||IEA  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; INVOLVED IN: intracellular signaling cascade; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13992.1); Has 1349 Blast hits to 554 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 41; Fungi - 12; Plants - 1260; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT4G16015.1p  transcript_id AT4G16015.1  protein_id AT4G16015.1p  transcript_id AT4G16015.1  
At4g16020	chr4:009075056	0.0	W/9075056-9078652	AT4G16020.2  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.3e-221 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element)  
At4g16024	chr4:009081179	0.0	C/9081179-9081245,9080840-9081057	AT4G16024.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G15990.1); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G16024.1p  transcript_id AT4G16024.1  protein_id AT4G16024.1p  transcript_id AT4G16024.1  
At4g16030	chr4:009083482	0.0	W/9083482-9083545,9083730-9083971,9084065-9084103	AT4G16030.1  CDS  gene_syn DL4055W, FCAALL.264  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product structural constituent of ribosome  note structural constituent of ribosome; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, ribosome; CONTAINS InterPro DOMAIN/s: Ribosomal protein L19/L19e (InterPro:IPR000196); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L19 (RPL19B) (TAIR:AT3G16780.1); Has 528 Blast hits to 528 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 245; Fungi - 95; Plants - 86; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).  protein_id AT4G16030.1p  transcript_id AT4G16030.1  protein_id AT4G16030.1p  transcript_id AT4G16030.1  
At4g16040	chr4:009087182	0.0	C/9087182-9087454	AT4G16040.1  CDS  gene_syn DL4060C, FCAALL.265  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G16040.1p  transcript_id AT4G16040.1  protein_id AT4G16040.1p  transcript_id AT4G16040.1  
At4g16045	chr4:009089906	0.0	W/9089906-9089972,9090310-9090375,9090455-9090523,9090596-9090720,9090878-9090991,9091068-9091544,9091630-9091860	AT4G16045.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT5G43560.2); Has 205 Blast hits to 201 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 8; Plants - 183; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT4G16045.1p  transcript_id AT4G16045.1  protein_id AT4G16045.1p  transcript_id AT4G16045.1  
At4g16050	chr4:009092243	0.0	W/9092243-9094243	AT4G16050.1  CDS  gene_syn DL4065W, FCAALL.267  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51538.1); Has 8168 Blast hits to 6033 proteins in 387 species: Archae - 10; Bacteria - 314; Metazoa - 2568; Fungi - 1035; Plants - 902; Viruses - 101; Other Eukaryotes - 3238 (source: NCBI BLink).  protein_id AT4G16050.1p  transcript_id AT4G16050.1  protein_id AT4G16050.1p  transcript_id AT4G16050.1  
At4g16060	chr4:009094424	0.0	W/9094424-9094679,9094764-9094894,9095058-9095135,9095226-9095270,9095360-9095404,9095496-9095547,9095637-9095733,9095982-9096147	AT4G16060.1  CDS  gene_syn DL4070W, FCAALL.269  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 23 Blast hits to 22 proteins in 7 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G16060.1p  transcript_id AT4G16060.1  protein_id AT4G16060.1p  transcript_id AT4G16060.1  
At4g16070	chr4:009100306	0.0	C/9100306-9100596,9099651-9099848,9098917-9099189,9098662-9098764,9098389-9098507,9097767-9097943,9096808-9097611	AT4G16070.1  CDS  gene_syn DL4075C, FCAALL.271  go_process lipid metabolic process|GO:0006629||IEA  go_process lipid catabolic process|GO:0016042||IEA  go_function carboxylesterase activity|GO:0004091||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product lipase class 3 family protein  note lipase class 3 family protein; FUNCTIONS IN: triacylglycerol lipase activity, carboxylesterase activity; INVOLVED IN: lipid catabolic process, lipid metabolic process; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921), Mono- and diacylglycerol lipase, N-terminal (InterPro:IPR005592); BEST Arabidopsis thaliana protein match is: lipase class 3 family protein (TAIR:AT3G14075.1); Has 2035 Blast hits to 1241 proteins in 172 species: Archae - 0; Bacteria - 55; Metazoa - 1126; Fungi - 205; Plants - 189; Viruses - 42; Other Eukaryotes - 418 (source: NCBI BLink).  protein_id AT4G16070.1p  transcript_id AT4G16070.1  protein_id AT4G16070.1p  transcript_id AT4G16070.1  
At4g16080	chr4:009101879	0.0	C/9101879-9102612,9101463-9101793	AT4G16080.1  CDS  gene_syn DL4080C, FCAALL.273  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45940.1); Has 130 Blast hits to 128 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 130; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G16080.1p  transcript_id AT4G16080.1  protein_id AT4G16080.1p  transcript_id AT4G16080.1  
At4g16090	chr4:009103078	0.0	W/9103078-9103134,9103216-9103965	AT4G16090.1  CDS  gene_syn DL4085W, FCAALL.276  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45930.1); Has 107 Blast hits to 107 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G16090.1p  transcript_id AT4G16090.1  protein_id AT4G16090.1p  transcript_id AT4G16090.1  
At4g16095	chr4:009104547	0.0	W/9104547-9104963,9105091-9105237	AT4G16095.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product disease resistance protein-related  note disease resistance protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT5G48620.1); Has 447 Blast hits to 413 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 445; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G16095.1p  transcript_id AT4G16095.1  protein_id AT4G16095.1p  transcript_id AT4G16095.1  
At4g16100	chr4:009105809	0.0	W/9105809-9106129,9106401-9106612,9107042-9107270,9107384-9107469,9107563-9107654,9107742-9107986	AT4G16100.1  CDS  gene_syn DL4090W, FCAALL.70  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49220.1); Has 153 Blast hits to 152 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G16100.1p  transcript_id AT4G16100.1  protein_id AT4G16100.1p  transcript_id AT4G16100.1  
At4g16105	chr4:009108308	0.0	W/9108308-9108381	AT4G16105.1  tRNA  gene_syn 68169.TRNA-THR-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Thr (anticodon: AGT)  transcript_id AT4G16105.1  
At4g16110	chr4:009112979	0.0	W/9112979-9113138,9113614-9113766,9113851-9114255,9114346-9114421,9114499-9115629,9115717-9115785	AT4G16110.1  CDS  gene_syn ARABIDOPSIS RESPONSE REGULATOR 2, ARR2, DL4095W, FCAALL.287  gene ARR2  function Encodes a pollen-specific transcription factor involved in the expression of nuclear genes for components of mitochondrial complex I in Arabidopsis. Acts in concert with other type-B ARRs in the cytokinin signaling pathway. AHK3 mediates cytokinin-induced phosphorylation of ARR2 on the Asp-80 residue. This phosphorylation plays a positive role of ARR2 in cytokinin-mediated control of leaf longevity.  go_component nucleus|GO:0005634|11135105|IDA  go_component nucleus|GO:0005634|11370868|IDA  go_process response to ethylene stimulus|GO:0009723|15282545|IMP  go_process response to ethylene stimulus|GO:0009723|16227453|IMP  go_process response to cytokinin stimulus|GO:0009735|16227453|IGI  go_process response to cytokinin stimulus|GO:0009735|16407152|IEP  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_process ethylene mediated signaling pathway|GO:0009873|16961732|IMP  go_process regulation of stomatal movement|GO:0010119|16961732|IMP  go_process leaf senescence|GO:0010150|16407152|IMP  go_function two-component response regulator activity|GO:0000156|11574878|ISS  go_function two-component response regulator activity|GO:0000156|12068096|ISS  go_function two-component response regulator activity|GO:0000156||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11135105|IDA  product ARR2 (ARABIDOPSIS RESPONSE REGULATOR 2); transcription factor/ two-component response regulator  note ARABIDOPSIS RESPONSE REGULATOR 2 (ARR2); FUNCTIONS IN: transcription factor activity, two-component response regulator activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Response regulator, plant B-type (InterPro:IPR017053), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), CheY-like (InterPro:IPR011006), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Signal transduction response regulator, receiver region (InterPro:IPR001789), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1); transcription factor/ two-component response regulator (TAIR:AT3G16857.2); Has 13426 Blast hits to 13401 proteins in 1298 species: Archae - 49; Bacteria - 11421; Metazoa - 11; Fungi - 35; Plants - 644; Viruses - 0; Other Eukaryotes - 1266 (source: NCBI BLink).  protein_id AT4G16110.1p  transcript_id AT4G16110.1  protein_id AT4G16110.1p  transcript_id AT4G16110.1  
At4g16120	chr4:009118580	0.0	C/9118580-9119138,9116591-9118017	AT4G16120.1  CDS  gene_syn ARABIDOPSIS THALIANA SEC61 BETA 1, ATSEB1, COBL7, COBRA-LIKE 7, DL4100C, FCAALL.104, SEB1, SEC61 BETA 1  gene COBL7  function putative membrane-anchored cell wall protein  go_component anchored to plasma membrane|GO:0046658|12805588|IDA  go_component endoplasmic reticulum|GO:0005783|9524266|ISS  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12376623|TAS  go_component anchored to membrane|GO:0031225|12805595|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product COBL7 (COBRA-LIKE 7)  note COBRA-LIKE 7 (COBL7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, endoplasmic reticulum, Golgi apparatus, anchored to membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918); BEST Arabidopsis thaliana protein match is: COBL8 (COBRA-LIKE PROTEIN 8 PRECURSOR) (TAIR:AT3G16860.1); Has 245 Blast hits to 241 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 245; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G16120.1p  transcript_id AT4G16120.1  protein_id AT4G16120.1p  transcript_id AT4G16120.1  
At4g16130	chr4:009120875	0.0	W/9120875-9121129,9121248-9121355,9121429-9121497,9121585-9121668,9121791-9121867,9122060-9122126,9122216-9122273,9122376-9122443,9122523-9122585,9122717-9122770,9122868-9122970,9123050-9123159,9123271-9123390,9123516-9123572,9123738-9123913,9123985-9124153,9124437-9124520,9124763-9124888,9124999-9125129,9125200-9125281,9125703-9125790,9125951-9125994,9126078-9126173,9126289-9126365,9126527-9126727,9126816-9126981,9127088-9127159,9127259-9127459,9127543-9127656	AT4G16130.1  CDS  gene_syn ARA1, ARABINOSE KINASE, ATISA1, DL4105W, FCAALL.288, ISA1  gene ARA1  function Similar to galactokinase.  go_component cytoplasm|GO:0005737||IEA  go_process arabinose metabolic process|GO:0019566||IMP  go_function galactokinase activity|GO:0004335||ISS  go_function ATP binding|GO:0005524||ISS  go_function L-arabinokinase activity|GO:0009702|10344205|IMP  product ARA1 (ARABINOSE KINASE); ATP binding / L-arabinokinase/ galactokinase  note ARABINOSE KINASE (ARA1); FUNCTIONS IN: L-arabinokinase activity, galactokinase activity, ATP binding; INVOLVED IN: arabinose metabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mevalonate and galactokinase (InterPro:IPR006206), GHMP kinase (InterPro:IPR006204), Galactokinase, glycosyltransferase (InterPro:IPR012369), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721), GHMP kinase, C-terminal (InterPro:IPR013750); BEST Arabidopsis thaliana protein match is: galactokinase, putative (TAIR:AT3G42850.1); Has 2068 Blast hits to 2064 proteins in 722 species: Archae - 57; Bacteria - 1283; Metazoa - 163; Fungi - 79; Plants - 70; Viruses - 0; Other Eukaryotes - 416 (source: NCBI BLink).  protein_id AT4G16130.1p  transcript_id AT4G16130.1  protein_id AT4G16130.1p  transcript_id AT4G16130.1  
At4g16140	chr4:009129046	0.0	W/9129046-9129540	AT4G16140.1  CDS  gene_syn DL4110W, FCAALL.289  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product proline-rich family protein  note proline-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 20927 Blast hits to 10326 proteins in 549 species: Archae - 20; Bacteria - 1524; Metazoa - 8055; Fungi - 2513; Plants - 5678; Viruses - 632; Other Eukaryotes - 2505 (source: NCBI BLink).  protein_id AT4G16140.1p  transcript_id AT4G16140.1  protein_id AT4G16140.1p  transcript_id AT4G16140.1  
At4g16141	chr4:009132720	0.0	C/9132720-9132893,9131872-9132291	AT4G16141.1  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function sequence-specific DNA binding|GO:0043565||IEA  product sequence-specific DNA binding / transcription factor/ zinc ion binding  note sequence-specific DNA binding / transcription factor/ zinc ion binding; FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: zinc finger (GATA type) family protein (TAIR:AT3G16870.1); Has 45 Blast hits to 45 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G16141.1p  transcript_id AT4G16141.1  protein_id AT4G16141.1p  transcript_id AT4G16141.1  
At4g16143	chr4:009136910	0.0	C/9136910-9137134,9136633-9136821,9136416-9136547,9136115-9136300,9135869-9136032,9135703-9135781,9135217-9135345,9134934-9135061,9134450-9134825	AT4G16143.1  CDS  gene_syn IMPA-2, IMPORTIN ALPHA ISOFORM 2  gene IMPA-2  function Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.  go_component nucleolus|GO:0005730|15496452|IDA  go_process protein import into nucleus|GO:0006606||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function binding|GO:0005488||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_process protein import into nucleus|GO:0006606||ISS  go_process intracellular protein transport|GO:0006886||ISS  go_function protein transporter activity|GO:0008565||ISS  product IMPA-2 (IMPORTIN ALPHA ISOFORM 2); binding / protein transporter  note IMPORTIN ALPHA ISOFORM 2 (IMPA-2); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus; LOCATED IN: cytosol, nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Importin-alpha-like, importin-beta-binding region (InterPro:IPR002652), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: IMPA-1 (IMPORTIN ALPHA ISOFORM 1); binding / protein transporter (TAIR:AT3G06720.2); Has 3441 Blast hits to 2209 proteins in 220 species: Archae - 2; Bacteria - 24; Metazoa - 1803; Fungi - 415; Plants - 670; Viruses - 0; Other Eukaryotes - 527 (source: NCBI BLink).  protein_id AT4G16143.1p  transcript_id AT4G16143.1  protein_id AT4G16143.1p  transcript_id AT4G16143.1  
At4g16143	chr4:009136910	0.0	C/9136910-9137134,9136633-9136821,9136416-9136547,9136115-9136300,9135869-9136032,9135703-9135781,9135217-9135345,9134934-9135061,9134450-9134825	AT4G16143.2  CDS  gene_syn IMPA-2, IMPORTIN ALPHA ISOFORM 2  gene IMPA-2  function Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.  go_process protein import into nucleus|GO:0006606||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function binding|GO:0005488||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_process protein import into nucleus|GO:0006606||ISS  go_process intracellular protein transport|GO:0006886||ISS  go_function protein transporter activity|GO:0008565||ISS  product IMPA-2 (IMPORTIN ALPHA ISOFORM 2); binding / protein transporter  note IMPORTIN ALPHA ISOFORM 2 (IMPA-2); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Importin-alpha-like, importin-beta-binding region (InterPro:IPR002652), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: IMPA-1 (IMPORTIN ALPHA ISOFORM 1); binding / protein transporter (TAIR:AT3G06720.2).  protein_id AT4G16143.2p  transcript_id AT4G16143.2  protein_id AT4G16143.2p  transcript_id AT4G16143.2  
At4g16144	chr4:009141324	0.0	C/9141324-9141422,9141043-9141107,9140884-9140959,9140602-9140793,9140385-9140476,9139876-9139981,9139699-9139745,9139287-9139614,9138910-9138999,9138752-9138814,9138574-9138646,9138367-9138429,9138053-9138280	AT4G16144.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: mov34 family protein (TAIR:AT1G48790.1); Has 622 Blast hits to 459 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 326; Fungi - 156; Plants - 82; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT4G16144.1p  transcript_id AT4G16144.1  protein_id AT4G16144.1p  transcript_id AT4G16144.1  
At4g16146	chr4:009144303	0.0	C/9144303-9144356,9143281-9143343,9143145-9143192,9142988-9143050,9142831-9142893,9142663-9142680	AT4G16146.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lg106-like (InterPro:IPR012482); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69510.3); Has 94 Blast hits to 94 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G16146.1p  transcript_id AT4G16146.1  protein_id AT4G16146.1p  transcript_id AT4G16146.1  
At4g16150	chr4:009148225	0.0	W/9148225-9148288,9148715-9148840,9148991-9149106,9149211-9149299,9149420-9149465,9149629-9149746,9149869-9149997,9150086-9150144,9150229-9150651,9151119-9151819,9151918-9152466,9152574-9152870,9152995-9153048	AT4G16150.1  CDS  gene_syn DL4115W, FCAALL.291  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function transcription regulator activity|GO:0030528|12218065|TAS  product calmodulin binding / transcription regulator  note calmodulin binding / transcription regulator; FUNCTIONS IN: transcription regulator activity, calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: CG-1 (InterPro:IPR005559), IQ calmodulin-binding region (InterPro:IPR000048), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: calmodulin-binding protein (TAIR:AT3G16940.1); Has 1758 Blast hits to 823 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 1405; Fungi - 45; Plants - 232; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT4G16150.1p  transcript_id AT4G16150.1  protein_id AT4G16150.1p  transcript_id AT4G16150.1  
At4g16155	chr4:009156816	0.0	C/9156816-9157322,9156427-9156573,9156168-9156302,9155964-9156066,9155726-9155850,9155368-9155493,9155199-9155279,9154860-9154922,9154676-9154750,9154514-9154592,9154295-9154395,9154094-9154207,9153877-9153990,9153713-9153784,9153570-9153620	AT4G16155.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process cell redox homeostasis|GO:0045454||IEA  go_component chloroplast|GO:0009507|11056213|IDA  go_function dihydrolipoyl dehydrogenase activity|GO:0004148|11056213|ISS  product dihydrolipoyl dehydrogenase  note dihydrolipoyl dehydrogenase; FUNCTIONS IN: dihydrolipoyl dehydrogenase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dihydrolipoamide dehydrogenase (InterPro:IPR006258), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), Pyridine nucleotide-disulphide oxidoreductase, class I, active site (InterPro:IPR012999), Mercuric reductase (InterPro:IPR000815), Pyridine nucleotide-disulphide oxidoreductase, dimerisation (InterPro:IPR004099); BEST Arabidopsis thaliana protein match is: LPD1 (LIPOAMIDE DEHYDROGENASE 1); dihydrolipoyl dehydrogenase (TAIR:AT3G16950.1); Has 18854 Blast hits to 18838 proteins in 1779 species: Archae - 357; Bacteria - 10400; Metazoa - 681; Fungi - 266; Plants - 270; Viruses - 0; Other Eukaryotes - 6880 (source: NCBI BLink).  protein_id AT4G16155.1p  transcript_id AT4G16155.1  protein_id AT4G16155.1p  transcript_id AT4G16155.1  
At4g16160	chr4:009157545	0.0	W/9157545-9157667,9157759-9157810,9157931-9158011,9158107-9158135,9158309-9158342,9158423-9158493,9158592-9158738	AT4G16160.2  CDS  gene_syn ATOEP16-2, ATOEP16-S, DL4120W, FCAALL.207  gene ATOEP16-2  function Homologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family. Two OEP16 genes are closely related to each other and are conserved in all land plants, OEP16-2, also named OEP16-S, and OEP16-1 (renamed OEP16-L) are result of the gene duplication event that occurred prior to divergence of bryophytes and seed plants. Predominantly expressed in seed and is not inducible by cold treatment. atOEP16-S gained an additional exon. The promoter region of atOEP16-S (but not atOEP16-L) contains multiple G-box ABA-responsive elements. The atOEP16-S promoter conferred developmentally regulated seed- and pollen-specific GUS expression in tobacco.  go_process protein transport|GO:0015031||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744||ISS  go_component plastid outer membrane|GO:0009527|14769929|ISS  go_process protein transport|GO:0015031||ISS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein  note ATOEP16-2; FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: plastid outer membrane, mitochondrial inner membrane presequence translocase complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Mitochondrial import inner membrane translocase, subunit Tim17/22 (InterPro:IPR003397); BEST Arabidopsis thaliana protein match is: ATOEP16-1 (OUTER PLASTID ENVELOPE PROTEIN 16-1); P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter (TAIR:AT2G28900.1); Has 81 Blast hits to 81 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G16160.2p  transcript_id AT4G16160.2  protein_id AT4G16160.2p  transcript_id AT4G16160.2  
At4g16160	chr4:009157545	0.0	W/9157545-9157667,9157759-9157810,9157937-9158011,9158107-9158135,9158309-9158342,9158423-9158493,9158592-9158738	AT4G16160.1  CDS  gene_syn ATOEP16-2, ATOEP16-S, DL4120W, FCAALL.207  gene ATOEP16-2  function Homologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family. Two OEP16 genes are closely related to each other and are conserved in all land plants, OEP16-2, also named OEP16-S, and OEP16-1 (renamed OEP16-L) are result of the gene duplication event that occurred prior to divergence of bryophytes and seed plants. Predominantly expressed in seed and is not inducible by cold treatment. atOEP16-S gained an additional exon. The promoter region of atOEP16-S (but not atOEP16-L) contains multiple G-box ABA-responsive elements. The atOEP16-S promoter conferred developmentally regulated seed- and pollen-specific GUS expression in tobacco.  go_process protein transport|GO:0015031||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744||ISS  go_component plastid outer membrane|GO:0009527|14769929|ISS  go_process protein transport|GO:0015031||ISS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein  note ATOEP16-2; FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: plastid outer membrane, mitochondrial inner membrane presequence translocase complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Mitochondrial import inner membrane translocase, subunit Tim17/22 (InterPro:IPR003397); BEST Arabidopsis thaliana protein match is: ATOEP16-1 (OUTER PLASTID ENVELOPE PROTEIN 16-1); P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter (TAIR:AT2G28900.1); Has 81 Blast hits to 81 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G16160.1p  transcript_id AT4G16160.1  protein_id AT4G16160.1p  transcript_id AT4G16160.1  
At4g16162	chr4:009161504	0.0	C/9161504-9161605,9161345-9161406,9161164-9161235,9160536-9160607,9160080-9160151,9159928-9159999,9159766-9159844	AT4G16162.1  CDS  go_component chloroplast|GO:0009507||IEA  go_function protein binding|GO:0005515||IEA  product protein binding  note protein binding; FUNCTIONS IN: protein binding; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase-related (TAIR:AT1G53420.1); Has 28702 Blast hits to 7106 proteins in 387 species: Archae - 13; Bacteria - 947; Metazoa - 630; Fungi - 27; Plants - 25148; Viruses - 0; Other Eukaryotes - 1937 (source: NCBI BLink).  protein_id AT4G16162.1p  transcript_id AT4G16162.1  protein_id AT4G16162.1p  transcript_id AT4G16162.1  
At4g16162	chr4:009161504	0.0	C/9161504-9161605,9161345-9161406,9161164-9161235,9160536-9160607,9160080-9160151,9159928-9159999,9159766-9159844	AT4G16162.2  CDS  go_component chloroplast|GO:0009507||IEA  go_function protein binding|GO:0005515||IEA  product protein binding  note protein binding; FUNCTIONS IN: protein binding; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase-related (TAIR:AT1G53420.1).  protein_id AT4G16162.2p  transcript_id AT4G16162.2  protein_id AT4G16162.2p  transcript_id AT4G16162.2  
At4g16162	chr4:009161504	0.0	C/9161504-9161605,9161345-9161406,9161164-9161235,9160536-9160607,9160389-9160446,9160080-9160151,9159973-9159999	AT4G16162.3  CDS  go_component chloroplast|GO:0009507||IEA  go_function protein binding|GO:0005515||IEA  product protein binding  note protein binding; FUNCTIONS IN: protein binding; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase-related (TAIR:AT1G53420.1).  protein_id AT4G16162.3p  transcript_id AT4G16162.3  protein_id AT4G16162.3p  transcript_id AT4G16162.3  
At4g16165	chr4:009164167	0.0	W/9164167-9164502	AT4G16165.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Expressed protein  note Expressed protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family protein 17 (TAIR:AT1G66870.1); Has 756 Blast hits to 720 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 756; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G16165.1p  transcript_id AT4G16165.1  protein_id AT4G16165.1p  transcript_id AT4G16165.1  
At4g16170	chr4:009167680	0.0	C/9167680-9167841,9167258-9167446,9167047-9167133,9166806-9166963,9166557-9166676,9166241-9166466,9166095-9166154,9165840-9166013,9165626-9165735,9165365-9165539	AT4G16170.1  CDS  gene_syn DL4125C, FCAALL.293  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28720.1); Has 54 Blast hits to 54 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT4G16170.1p  transcript_id AT4G16170.1  protein_id AT4G16170.1p  transcript_id AT4G16170.1  
At4g16180	chr4:009170108	0.0	C/9170108-9170323,9169662-9169856,9169308-9169382,9168987-9169154,9168562-9168729	AT4G16180.1  CDS  gene_syn DL4130C, FCAALL.295  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; Has 18 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT4G16180.1p  transcript_id AT4G16180.1  protein_id AT4G16180.1p  transcript_id AT4G16180.1  
At4g16180	chr4:009170108	0.0	C/9170108-9170323,9169662-9169856,9169308-9169382,9168987-9169154,9168566-9168729,9167891-9168113	AT4G16180.2  CDS  gene_syn DL4130C, FCAALL.295  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown.  protein_id AT4G16180.2p  transcript_id AT4G16180.2  protein_id AT4G16180.2p  transcript_id AT4G16180.2  
At4g16190	chr4:009171512	0.0	W/9171512-9171985,9172080-9172199,9172275-9172521,9172597-9172877	AT4G16190.1  CDS  gene_syn DL4135W, FCAALL.298  go_component vacuole|GO:0005773|15539469|IDA  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product cysteine proteinase, putative  note cysteine proteinase, putative; FUNCTIONS IN: cysteine-type peptidase activity, cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: RD19 (RESPONSIVE TO DEHYDRATION 19); cysteine-type endopeptidase/ cysteine-type peptidase (TAIR:AT4G39090.1); Has 6049 Blast hits to 6013 proteins in 589 species: Archae - 27; Bacteria - 106; Metazoa - 2786; Fungi - 4; Plants - 1188; Viruses - 126; Other Eukaryotes - 1812 (source: NCBI BLink).  protein_id AT4G16190.1p  transcript_id AT4G16190.1  protein_id AT4G16190.1p  transcript_id AT4G16190.1  
At4g16195	chr4:009173165	0.0	C/9173165-9173650	AT4G16195.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product self-incompatibility protein-related  note self-incompatibility protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: self-incompatibility protein-related (TAIR:AT3G17080.1); Has 107 Blast hits to 104 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G16195.1p  transcript_id AT4G16195.1  protein_id AT4G16195.1p  transcript_id AT4G16195.1  
At4g16200	chr4:009175649	0.0	W/9175649-9176190,9176241-9176565	AT4G16200.1  CDS  gene_syn DL4140W, FCAALL.301  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process RNA processing|GO:0006396||ISS  go_function RNA binding|GO:0003723||ISS  product SWAP (Suppressor-of-White-APricot)/surp domain-containing protein  note SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (TAIR:AT1G14650.2); Has 593 Blast hits to 386 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 345; Fungi - 114; Plants - 78; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT4G16200.1p  transcript_id AT4G16200.1  protein_id AT4G16200.1p  transcript_id AT4G16200.1  
At4g16210	chr4:009177569	0.0	C/9177569-9177978,9177047-9177329,9176864-9176968	AT4G16210.1  CDS  gene_syn DL4145C, E-COAH-2, ECHIA, ENOYL-COA HYDRATASE 2, ENOYL-COA HYDRATASE/ISOMERASE A, FCAALL.314  gene ECHIA  go_component peroxisome|GO:0005777|17951448|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_process metabolic process|GO:0008152||ISS  go_function catalytic activity|GO:0003824||ISS  product ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A); catalytic  note ENOYL-COA HYDRATASE/ISOMERASE A (ECHIA); FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: ECHID (ENOYL-COA HYDRATASE/ISOMERASE D); catalytic/ naphthoate synthase (TAIR:AT1G60550.1); Has 25757 Blast hits to 25754 proteins in 1304 species: Archae - 201; Bacteria - 14217; Metazoa - 1423; Fungi - 585; Plants - 340; Viruses - 0; Other Eukaryotes - 8991 (source: NCBI BLink).  protein_id AT4G16210.1p  transcript_id AT4G16210.1  protein_id AT4G16210.1p  transcript_id AT4G16210.1  
At4g16215	chr4:009179696	0.0	C/9179696-9179833,9179492-9179576,9179244-9179392	AT4G16215.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G16215.1p  transcript_id AT4G16215.1  protein_id AT4G16215.1p  transcript_id AT4G16215.1  
At4g16220	chr4:009182283	0.0	W/9182283-9182520,9183487-9183509,9183578-9183922	AT4G16220.1  CDS  gene_syn DL4150W, FCAALL.316  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  product hydrolase, acting on ester bonds  note hydrolase, acting on ester bonds; FUNCTIONS IN: hydrolase activity, acting on ester bonds; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: carboxylesterase/ hydrolase, acting on ester bonds (TAIR:AT4G16230.1); Has 898 Blast hits to 893 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 897; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G16220.1p  transcript_id AT4G16220.1  protein_id AT4G16220.1p  transcript_id AT4G16220.1  
At4g16230	chr4:009185298	0.0	W/9185298-9185535,9185774-9185904,9185978-9186223,9186307-9186447	AT4G16230.1  CDS  gene_syn DL4155W, FCAALL.318  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product carboxylesterase/ hydrolase, acting on ester bonds  note carboxylesterase/ hydrolase, acting on ester bonds; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT3G50400.1); Has 1756 Blast hits to 1606 proteins in 86 species: Archae - 0; Bacteria - 64; Metazoa - 1; Fungi - 2; Plants - 1682; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT4G16230.1p  transcript_id AT4G16230.1  protein_id AT4G16230.1p  transcript_id AT4G16230.1  
At4g16235	chr4:009191576	0.0	W/9191576-9191648	AT4G16235.1  tRNA  gene_syn 68169.TRNA-VAL-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Val (anticodon: TAC)  transcript_id AT4G16235.1  
At4g16240	chr4:009192555	0.0	C/9192555-9192568,9192336-9192450	AT4G16240.1  CDS  gene_syn DL4160C, FCAALL.320  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, F mature embryo stage, C globular stage, petal differentiation and expansion stage; Has 16322 Blast hits to 4425 proteins in 484 species: Archae - 29; Bacteria - 2669; Metazoa - 6141; Fungi - 650; Plants - 4906; Viruses - 361; Other Eukaryotes - 1566 (source: NCBI BLink).  protein_id AT4G16240.1p  transcript_id AT4G16240.1  protein_id AT4G16240.1p  transcript_id AT4G16240.1  
At4g16250	chr4:009197311	0.0	C/9197311-9199486,9196419-9197226,9196028-9196318,9195602-9195821	AT4G16250.1  CDS  gene_syn DL4165C, FCAALL.323, PHYD, PHYTOCHROME D, PHYTOCHROME DEFECTIVE D  gene PHYD  function Encodes a phytochrome photoreceptor with a function similar to that of phyB that absorbs the red/far-red part of the light spectrum and is involved in light responses. It cannot compensate for phyB loss in Arabidopsis but can substitute for tobacco phyB in vivo.  go_component nucleus|GO:0005634|15753105|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process red or far red light signaling pathway|GO:0010017|15753105|IGI  go_function signal transducer activity|GO:0004871||ISS  go_function G-protein coupled photoreceptor activity|GO:0008020||ISS  go_function red or far-red light photoreceptor activity|GO:0009883|15753105|IGI  product PHYD (PHYTOCHROME DEFECTIVE D); G-protein coupled photoreceptor/ red or far-red light photoreceptor/ signal transducer  note PHYTOCHROME DEFECTIVE D (PHYD); FUNCTIONS IN: red or far-red light photoreceptor activity, G-protein coupled photoreceptor activity, signal transducer activity; INVOLVED IN: red or far red light signaling pathway, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATP-binding region, ATPase-like (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome A/B/C/D/E (InterPro:IPR012129), Phytochrome (InterPro:IPR001294), Phytochrome chromophore binding site (InterPro:IPR013516), Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region (InterPro:IPR003661), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: PHYB (PHYTOCHROME B); G-protein coupled photoreceptor/ protein histidine kinase/ red or far-red light photoreceptor/ signal transducer (TAIR:AT2G18790.1); Has 16117 Blast hits to 15978 proteins in 2390 species: Archae - 152; Bacteria - 11844; Metazoa - 2; Fungi - 344; Plants - 2817; Viruses - 5; Other Eukaryotes - 953 (source: NCBI BLink).  protein_id AT4G16250.1p  transcript_id AT4G16250.1  protein_id AT4G16250.1p  transcript_id AT4G16250.1  
At4g16260	chr4:009201384	0.0	C/9201384-9201441,9200791-9201274,9200180-9200672	AT4G16260.1  CDS  gene_syn DL4170C, FCAALL.386  go_component cell wall|GO:0005618|15593128|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: response to salt stress; LOCATED IN: cell wall, plasma membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BG1 (BETA-1,3-GLUCANASE 1); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT3G57270.1); Has 1374 Blast hits to 1365 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1371; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G16260.1p  transcript_id AT4G16260.1  protein_id AT4G16260.1p  transcript_id AT4G16260.1  
At4g16265	chr4:009203947	0.0	C/9203947-9203975,9203600-9203675,9202788-9202946,9202529-9202609	AT4G16265.1  CDS  gene_syn NRPB9B, NRPD9B, NRPE9B  gene NRPB9B  function One of two highly similar, non-catalytic subunits common to nuclear DNA-directed RNA polymerases II, IV and V; homologous to budding yeast RPB9. Appears to be redundant with At3g16980  go_process transcription|GO:0006350||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function transcription regulator activity|GO:0030528||IEA  go_component DNA-directed RNA polymerase IV complex|GO:0000418|19110459|IPI  go_component DNA-directed RNA polymerase II, core complex|GO:0005665|19110459|IPI  go_component DNA-directed RNA polymerase V complex|GO:0080137|19110459|IPI  go_process transcription|GO:0006350||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product NRPB9B; DNA binding / DNA-directed RNA polymerase/ nucleic acid binding / transcription regulator/ zinc ion binding  note NRPB9B; FUNCTIONS IN: DNA-directed RNA polymerase activity, transcription regulator activity, DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: transcription, regulation of transcription; LOCATED IN: DNA-directed RNA polymerase V complex, DNA-directed RNA polymerase II, core complex, DNA-directed RNA polymerase IV complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, TFIIS-type (InterPro:IPR001222), DNA-directed RNA polymerase, M/15 kDa subunit (InterPro:IPR001529); BEST Arabidopsis thaliana protein match is: NRPB9A; DNA binding / DNA-directed RNA polymerase/ nucleic acid binding / transcription regulator/ zinc ion binding (TAIR:AT3G16980.1); Has 659 Blast hits to 657 proteins in 202 species: Archae - 93; Bacteria - 0; Metazoa - 200; Fungi - 151; Plants - 60; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink).  protein_id AT4G16265.1p  transcript_id AT4G16265.1  protein_id AT4G16265.1p  transcript_id AT4G16265.1  
At4g16267	chr4:009204839	0.0	C/9204839-9205948	AT4G16267.1  pseudogenic_transcript  pseudo  function Encodes a Plant thionin family protein [pseudogene]  
At4g16270	chr4:009205038	0.0	W/9205038-9205364,9205564-9205755,9205836-9206001,9206080-9206483	AT4G16270.1  CDS  gene_syn DL4175W, FCAALL.329  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase 40 (PER40) (P40)  note peroxidase 40 (PER40) (P40); FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT1G44970.1); Has 3257 Blast hits to 3242 proteins in 267 species: Archae - 0; Bacteria - 16; Metazoa - 2; Fungi - 356; Plants - 2829; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT4G16270.1p  transcript_id AT4G16270.1  protein_id AT4G16270.1p  transcript_id AT4G16270.1  
At4g16280	chr4:009210605	0.0	C/9210605-9210632,9210438-9210517,9210285-9210349,9210019-9210078,9209768-9209930,9209367-9209450,9208814-9209281,9208469-9208648,9208135-9208314,9208011-9208043,9207792-9207824,9207590-9207622,9207341-9207406,9207164-9207208	AT4G16280.1  CDS  gene_syn DL4180C, FCA, FCAALL.331, FLOWERING TIME CONTROL PROTEIN FCA ALPHA, BETA, DELTA AND GAMMA  gene FCA  function Involved in the promotion of the transition of the vegetative meristem to reproductive development. Four forms of the protein (alpha, beta, delta and gamma) are produced by alternative splicing. Involved in RNA-mediated chromatin silencing.  go_component chromatin|GO:0000785|17916737|TAS  go_process embryo sac development|GO:0009553|17916737|IGI  go_process embryonic development|GO:0009790|17916737|IGI  go_process regulation of flower development|GO:0009909|11457959|IMP  go_process chromatin silencing by small RNA|GO:0031048|17916737|IMP  go_function RNA binding|GO:0003723|9182761|IDA  go_function RNA binding|GO:0003723||ISS  product FCA; RNA binding  note FCA; FUNCTIONS IN: RNA binding; INVOLVED IN: embryonic development, embryo sac development, chromatin silencing by small RNA, regulation of flower development; LOCATED IN: chromatin; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Ribonucleoprotein, BRUNO-like (InterPro:IPR015903), WW/Rsp5/WWP (InterPro:IPR001202), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: flowering time control protein-related / FCA gamma-related (TAIR:AT2G47310.1); Has 7707 Blast hits to 6020 proteins in 331 species: Archae - 0; Bacteria - 114; Metazoa - 3726; Fungi - 1009; Plants - 1032; Viruses - 34; Other Eukaryotes - 1792 (source: NCBI BLink).  protein_id AT4G16280.1p  transcript_id AT4G16280.1  protein_id AT4G16280.1p  transcript_id AT4G16280.1  
At4g16280	chr4:009214079	0.0	C/9214079-9214412,9213753-9213823,9213587-9213665,9211429-9211511,9211297-9211348,9211032-9211099,9210605-9210671,9210438-9210517,9210285-9210349,9210019-9210078,9209768-9209930,9209367-9209450,9208814-9209281,9208469-9208648,9208135-9208314,9208011-9208043,9207792-9207824,9207590-9207622,9207341-9207406,9207164-9207208	AT4G16280.2  CDS  gene_syn DL4180C, FCA, FCAALL.331, FLOWERING TIME CONTROL PROTEIN FCA ALPHA, BETA, DELTA AND GAMMA  gene FCA  function Involved in the promotion of the transition of the vegetative meristem to reproductive development. Four forms of the protein (alpha, beta, delta and gamma) are produced by alternative splicing. Involved in RNA-mediated chromatin silencing.  go_component chromatin|GO:0000785|17916737|TAS  go_process embryo sac development|GO:0009553|17916737|IGI  go_process embryonic development|GO:0009790|17916737|IGI  go_process regulation of flower development|GO:0009909|11457959|IMP  go_process chromatin silencing by small RNA|GO:0031048|17916737|IMP  go_function RNA binding|GO:0003723|9182761|IDA  go_function RNA binding|GO:0003723||ISS  product FCA; RNA binding  note FCA; FUNCTIONS IN: RNA binding; INVOLVED IN: embryonic development, embryo sac development, chromatin silencing by small RNA, regulation of flower development; LOCATED IN: chromatin; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Ribonucleoprotein, BRUNO-like (InterPro:IPR015903), WW/Rsp5/WWP (InterPro:IPR001202), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: flowering time control protein-related / FCA gamma-related (TAIR:AT2G47310.1); Has 25580 Blast hits to 18572 proteins in 687 species: Archae - 10; Bacteria - 1077; Metazoa - 14199; Fungi - 2872; Plants - 3771; Viruses - 33; Other Eukaryotes - 3618 (source: NCBI BLink).  protein_id AT4G16280.2p  transcript_id AT4G16280.2  protein_id AT4G16280.2p  transcript_id AT4G16280.2  
At4g16280	chr4:009214079	0.0	C/9214079-9214412,9213753-9213823,9213587-9213665,9211429-9211511,9211297-9211348,9211032-9211099,9210605-9210671,9210438-9210517,9210285-9210349,9210019-9210078,9209768-9209930,9209367-9209450,9208889-9209281,9208564-9208566	AT4G16280.3  CDS  gene_syn DL4180C, FCA, FCAALL.331, FLOWERING TIME CONTROL PROTEIN FCA ALPHA, BETA, DELTA AND GAMMA  gene FCA  function Involved in the promotion of the transition of the vegetative meristem to reproductive development. Four forms of the protein (alpha, beta, delta and gamma) are produced by alternative splicing. Involved in RNA-mediated chromatin silencing.  go_component chromatin|GO:0000785|17916737|TAS  go_process embryo sac development|GO:0009553|17916737|IGI  go_process embryonic development|GO:0009790|17916737|IGI  go_process regulation of flower development|GO:0009909|11457959|IMP  go_process chromatin silencing by small RNA|GO:0031048|17916737|IMP  go_function RNA binding|GO:0003723|9182761|IDA  go_function RNA binding|GO:0003723||ISS  product FCA; RNA binding  note FCA; FUNCTIONS IN: RNA binding; INVOLVED IN: embryonic development, embryo sac development, chromatin silencing by small RNA, regulation of flower development; LOCATED IN: chromatin; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Ribonucleoprotein, BRUNO-like (InterPro:IPR015903), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Paraneoplastic encephalomyelitis antigen (InterPro:IPR002343); BEST Arabidopsis thaliana protein match is: flowering time control protein-related / FCA gamma-related (TAIR:AT2G47310.1); Has 20459 Blast hits to 14650 proteins in 616 species: Archae - 10; Bacteria - 1029; Metazoa - 11779; Fungi - 2137; Plants - 3060; Viruses - 20; Other Eukaryotes - 2424 (source: NCBI BLink).  protein_id AT4G16280.3p  transcript_id AT4G16280.3  protein_id AT4G16280.3p  transcript_id AT4G16280.3  
At4g16295	chr4:009215680	0.0	C/9215680-9216135	AT4G16295.1  CDS  gene_syn S-PROTEIN HOMOLOGUE 1, SPH1  gene SPH1  function self-incompatibility (S) protein homolog, expressed at very low levels in floral buds  go_component endomembrane system|GO:0012505||IEA  go_process pollen-pistil interaction|GO:0009875|10344198|ISS  go_function molecular_function|GO:0003674||ND  product SPH1 (S-PROTEIN HOMOLOGUE 1)  note S-PROTEIN HOMOLOGUE 1 (SPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen-pistil interaction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29035.1); Has 62 Blast hits to 61 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G16295.1p  transcript_id AT4G16295.1  protein_id AT4G16295.1p  transcript_id AT4G16295.1  
At4g16310	chr4:009218636	0.0	W/9218636-9219885,9220236-9220377,9220541-9222748,9222876-9222969,9223126-9223463,9223598-9224311,9224410-9224484,9224699-9224764	AT4G16310.1  CDS  gene_syn DL4185W, FCAALL.342, LDL3, LSD1-LIKE3  gene LDL3  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function amine oxidase activity|GO:0008131||ISS  product LDL3 (LSD1-LIKE3); amine oxidase/ electron carrier/ oxidoreductase  note LSD1-LIKE3 (LDL3); FUNCTIONS IN: electron carrier activity, amine oxidase activity, oxidoreductase activity; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), Adrenodoxin reductase (InterPro:IPR000759), SWIRM (InterPro:IPR007526); BEST Arabidopsis thaliana protein match is: LDL2 (LSD1-LIKE2); amine oxidase/ electron carrier/ oxidoreductase (TAIR:AT3G13682.1); Has 846 Blast hits to 688 proteins in 131 species: Archae - 11; Bacteria - 294; Metazoa - 437; Fungi - 53; Plants - 24; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT4G16310.1p  transcript_id AT4G16310.1  protein_id AT4G16310.1p  transcript_id AT4G16310.1  
At4g16330	chr4:009227012	0.0	C/9227012-9227235,9226605-9226926,9226298-9226528	AT4G16330.1  CDS  gene_syn DL4195C, FCAALL.60  go_component peroxisome|GO:0005777|12154131|IDA  go_function oxidoreductase activity|GO:0016491||IEA  go_process flavonoid biosynthetic process|GO:0009813||ISS  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors  note oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: flavonoid biosynthetic process; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT2G38240.1); Has 5424 Blast hits to 5410 proteins in 662 species: Archae - 0; Bacteria - 677; Metazoa - 111; Fungi - 490; Plants - 3015; Viruses - 0; Other Eukaryotes - 1131 (source: NCBI BLink).  protein_id AT4G16330.1p  transcript_id AT4G16330.1  protein_id AT4G16330.1p  transcript_id AT4G16330.1  
At4g16340	chr4:009240983	0.0	C/9240983-9241060,9240744-9240906,9240572-9240663,9240367-9240479,9240221-9240276,9240030-9240127,9239763-9239900,9239209-9239520,9238283-9238570,9237767-9237928,9237489-9237680,9237366-9237409,9237000-9237069,9236180-9236341,9235993-9236100,9235827-9235864,9235368-9235512,9235061-9235187,9234326-9234519,9233787-9233917,9233464-9233539,9233260-9233370,9232751-9232933,9232304-9232447,9231931-9232104,9231479-9231826,9231073-9231402,9230247-9230432,9229117-9230091,9228773-9229027	AT4G16340.1  CDS  gene_syn DL4200C, FCAALL.346, SPIKE1, SPK1  gene SPK1  function mutant has Seedling lethal; Cotyledon, leaf-shape, trichome defects; Putative Cytoskeletal Protein  go_component plasma membrane|GO:0005886|17317660|IDA  go_function guanyl-nucleotide exchange factor activity|GO:0005085||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTPase binding|GO:0051020||IEA  go_component cytosol|GO:0005829|18433157|IDA  product SPK1 (SPIKE1); GTP binding / GTPase binding / guanyl-nucleotide exchange factor  note SPIKE1 (SPK1); FUNCTIONS IN: GTPase binding, GTP binding, guanyl-nucleotide exchange factor activity; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dedicator of cytokinesis (InterPro:IPR010703); Has 1333 Blast hits to 893 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 1099; Fungi - 48; Plants - 35; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).  protein_id AT4G16340.1p  transcript_id AT4G16340.1  protein_id AT4G16340.1p  transcript_id AT4G16340.1  
At4g16350	chr4:009243552	0.0	C/9243552-9243669,9243402-9243472,9243258-9243317,9243078-9243186,9242863-9242996,9242659-9242771,9242505-9242580	AT4G16350.1  CDS  gene_syn CALCINEURIN B-LIKE PROTEIN 6, CBL6, DL4205C, FCAALL.89, SCABP2, SOS3-LIKE CALCIUM BINDING PROTEIN 2  gene CBL6  function Calcium sensor protein. Binds CIPK14.  go_component endomembrane system|GO:0012505||IEA  go_process calcium-mediated signaling|GO:0019722|11230129|ISS  go_function calcium ion binding|GO:0005509|11230129|ISS  go_function calcium ion binding|GO:0005509||ISS  product CBL6 (CALCINEURIN B-LIKE PROTEIN 6); calcium ion binding  note CALCINEURIN B-LIKE PROTEIN 6 (CBL6); FUNCTIONS IN: calcium ion binding; INVOLVED IN: calcium-mediated signaling; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, sepal, root, carpel, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), Recoverin (InterPro:IPR001125), Calcineurin B protein (InterPro:IPR015757), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CBL2 (CALCINEURIN B-LIKE 2); calcium ion binding (TAIR:AT5G55990.1); Has 6573 Blast hits to 6559 proteins in 714 species: Archae - 0; Bacteria - 13; Metazoa - 3598; Fungi - 977; Plants - 1099; Viruses - 0; Other Eukaryotes - 886 (source: NCBI BLink).  protein_id AT4G16350.1p  transcript_id AT4G16350.1  protein_id AT4G16350.1p  transcript_id AT4G16350.1  
At4g16355	chr4:009244066	0.0	W/9244066-9244654	AT4G16355.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G16355.1  
At4g16360	chr4:009245662	0.0	W/9245662-9245769,9245863-9246044,9246142-9246304,9246507-9246833	AT4G16360.1  CDS  gene_syn DL4210W, FCAALL.163  go_component chloroplast|GO:0009507||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function AMP-activated protein kinase activity|GO:0004679||ISS  product AMP-activated protein kinase  note AMP-activated protein kinase; FUNCTIONS IN: AMP-activated protein kinase activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 5-AMP-activated protein kinase, beta subunit, complex-interacting region (InterPro:IPR006828); BEST Arabidopsis thaliana protein match is: 5 -AMP-activated protein kinase beta-2 subunit, putative (TAIR:AT5G21170.1); Has 629 Blast hits to 603 proteins in 153 species: Archae - 0; Bacteria - 9; Metazoa - 218; Fungi - 176; Plants - 149; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT4G16360.1p  transcript_id AT4G16360.1  protein_id AT4G16360.1p  transcript_id AT4G16360.1  
At4g16360	chr4:009245662	0.0	W/9245662-9245769,9245863-9246044,9246145-9246304,9246507-9246833	AT4G16360.2  CDS  gene_syn DL4210W, FCAALL.163  go_component chloroplast|GO:0009507||IEA  go_function AMP-activated protein kinase activity|GO:0004679||ISS  product AMP-activated protein kinase  note AMP-activated protein kinase; FUNCTIONS IN: AMP-activated protein kinase activity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 5-AMP-activated protein kinase, beta subunit, complex-interacting region (InterPro:IPR006828); BEST Arabidopsis thaliana protein match is: 5 -AMP-activated protein kinase beta-2 subunit, putative (TAIR:AT5G21170.1); Has 611 Blast hits to 587 proteins in 155 species: Archae - 0; Bacteria - 10; Metazoa - 214; Fungi - 169; Plants - 145; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT4G16360.2p  transcript_id AT4G16360.2  protein_id AT4G16360.2p  transcript_id AT4G16360.2  
At4g16370	chr4:009249580	0.0	C/9249580-9250071,9249399-9249496,9248734-9249303,9248397-9248652,9247514-9248311	AT4G16370.1  CDS  gene_syn ATOPT3, DL4215C, FCAALL.72, OLIGOPEPTIDE TRANSPORTER, OPT3  gene ATOPT3  function Encodes an oligopeptide transporter involved in metal homeostasis.  go_component membrane|GO:0016020|11788749|ISS  go_process oligopeptide transport|GO:0006857||ISS  go_process cellular metal ion homeostasis|GO:0006875|18083798|IMP  go_function oligopeptide transporter activity|GO:0015198|11788749|ISS  go_function oligopeptide transporter activity|GO:0015198||ISS  product ATOPT3 (OLIGOPEPTIDE TRANSPORTER); oligopeptide transporter  note OLIGOPEPTIDE TRANSPORTER (ATOPT3); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport, cellular metal ion homeostasis; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetrapeptide transporter, OPT1/isp4 (InterPro:IPR004648), Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: ATOPT2; oligopeptide transporter (TAIR:AT1G09930.1); Has 715 Blast hits to 705 proteins in 73 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 523; Plants - 177; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G16370.1p  transcript_id AT4G16370.1  protein_id AT4G16370.1p  transcript_id AT4G16370.1  
At4g16380	chr4:009254638	0.0	W/9254638-9254661,9255107-9255188,9255297-9255955	AT4G16380.1  CDS  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  product metal ion binding  note metal ion binding; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT1G51090.1); Has 21 Blast hits to 21 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G16380.1p  transcript_id AT4G16380.1  protein_id AT4G16380.1p  transcript_id AT4G16380.1  
At4g16380	chr4:009255148	0.0	W/9255148-9255188,9255295-9255955	AT4G16380.2  CDS  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: metal ion binding (TAIR:AT1G49420.1); Has 3600 Blast hits to 3158 proteins in 308 species: Archae - 4; Bacteria - 309; Metazoa - 1646; Fungi - 490; Plants - 698; Viruses - 60; Other Eukaryotes - 393 (source: NCBI BLink).  protein_id AT4G16380.2p  transcript_id AT4G16380.2  protein_id AT4G16380.2p  transcript_id AT4G16380.2  
At4g16390	chr4:009257985	0.0	W/9257985-9260093	AT4G16390.1  CDS  gene_syn DL4225W, FCAALL.354  go_component chloroplast|GO:0009507|18431481|IDA  product unknown protein  note LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G46580.1); Has 19821 Blast hits to 5782 proteins in 183 species: Archae - 2; Bacteria - 24; Metazoa - 276; Fungi - 350; Plants - 18437; Viruses - 0; Other Eukaryotes - 732 (source: NCBI BLink).  protein_id AT4G16390.1p  transcript_id AT4G16390.1  protein_id AT4G16390.1p  transcript_id AT4G16390.1  
At4g16400	chr4:009260564	0.0	W/9260564-9260815,9260944-9260989,9261507-9261828,9262066-9262102	AT4G16400.1  CDS  gene_syn DL4230W, FCAALL.356  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, LP.12 twelve leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13175.1); Has 11 Blast hits to 11 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G16400.1p  transcript_id AT4G16400.1  protein_id AT4G16400.1p  transcript_id AT4G16400.1  
At4g16410	chr4:009262019	0.0	C/9262019-9262576	AT4G16410.1  CDS  gene_syn DL4233C, FCAALL.144  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF751 (InterPro:IPR008470); Has 136 Blast hits to 136 proteins in 35 species: Archae - 0; Bacteria - 50; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT4G16410.1p  transcript_id AT4G16410.1  protein_id AT4G16410.1p  transcript_id AT4G16410.1  
At4g16420	chr4:009265726	0.0	C/9265726-9265775,9265227-9265282,9264967-9265139,9264778-9264843,9264562-9264687,9264389-9264464,9264251-9264296,9264153-9264172,9263682-9263901,9263389-9263599,9263084-9263308,9262805-9262996	AT4G16420.3  CDS  gene_syn ADA2B, DL4235C, FCAALL.57, HOMOLOG OF YEAST ADA2 2B, PROPORZ1, PRZ1  gene ADA2B  function Transcriptional co-activator. Essential for the developmental switch from cell proliferation to cell differentiation in response to variations in auxin and cytokinin concentrations.  go_component nucleus|GO:0005634|12747832|IDA  go_process cold acclimation|GO:0009631|12615937|IMP  go_process response to auxin stimulus|GO:0009733|12747832|IMP  go_process response to cytokinin stimulus|GO:0009735|12747832|IMP  go_process regulation of cell proliferation|GO:0042127|12747832|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  go_function transcription coactivator activity|GO:0003713|12747832|IDA  product ADA2B (HOMOLOG OF YEAST ADA2 2B); DNA binding / transcription coactivator/ transcription factor  note HOMOLOG OF YEAST ADA2 2B (ADA2B); FUNCTIONS IN: transcription coactivator activity, transcription factor activity, DNA binding; INVOLVED IN: cold acclimation, response to auxin stimulus, response to cytokinin stimulus, regulation of cell proliferation; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), SANT, eukarya (InterPro:IPR017884), SANT, DNA-binding (InterPro:IPR001005), Transcriptional adaptor 2 (InterPro:IPR016827), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), SWIRM (InterPro:IPR007526), Zinc finger, ZZ-type (InterPro:IPR000433), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ADA2A (HOMOLOG OF YEAST ADA2 2A); DNA binding / transcription factor/ zinc ion binding (TAIR:AT3G07740.1); Has 1064 Blast hits to 1035 proteins in 157 species: Archae - 0; Bacteria - 15; Metazoa - 525; Fungi - 188; Plants - 114; Viruses - 0; Other Eukaryotes - 222 (source: NCBI BLink).  protein_id AT4G16420.3p  transcript_id AT4G16420.3  protein_id AT4G16420.3p  transcript_id AT4G16420.3  
At4g16420	chr4:009265726	0.0	C/9265726-9265775,9265227-9265282,9264967-9265139,9264778-9264843,9264562-9264687,9264389-9264464,9264251-9264299,9264153-9264172,9263682-9263889,9263389-9263599,9263084-9263308,9262805-9262996	AT4G16420.2  CDS  gene_syn ADA2B, DL4235C, FCAALL.57, HOMOLOG OF YEAST ADA2 2B, PROPORZ1, PRZ1  gene ADA2B  function Transcriptional co-activator. Essential for the developmental switch from cell proliferation to cell differentiation in response to variations in auxin and cytokinin concentrations.  go_component nucleus|GO:0005634|12747832|IDA  go_process cold acclimation|GO:0009631|12615937|IMP  go_process response to auxin stimulus|GO:0009733|12747832|IMP  go_process response to cytokinin stimulus|GO:0009735|12747832|IMP  go_process regulation of cell proliferation|GO:0042127|12747832|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  go_function transcription coactivator activity|GO:0003713|12747832|IDA  product ADA2B (HOMOLOG OF YEAST ADA2 2B); DNA binding / transcription coactivator/ transcription factor  note HOMOLOG OF YEAST ADA2 2B (ADA2B); FUNCTIONS IN: transcription coactivator activity, transcription factor activity, DNA binding; INVOLVED IN: cold acclimation, response to auxin stimulus, response to cytokinin stimulus, regulation of cell proliferation; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), SANT, eukarya (InterPro:IPR017884), SANT, DNA-binding (InterPro:IPR001005), Transcriptional adaptor 2 (InterPro:IPR016827), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), SWIRM (InterPro:IPR007526), Zinc finger, ZZ-type (InterPro:IPR000433), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ADA2A (HOMOLOG OF YEAST ADA2 2A); DNA binding / transcription factor/ zinc ion binding (TAIR:AT3G07740.1); Has 1054 Blast hits to 1022 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 520; Fungi - 178; Plants - 109; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).  protein_id AT4G16420.2p  transcript_id AT4G16420.2  protein_id AT4G16420.2p  transcript_id AT4G16420.2  
At4g16420	chr4:009265726	0.0	C/9265726-9265775,9265227-9265282,9264967-9265139,9264778-9264843,9264562-9264687,9264389-9264464,9264251-9264299,9264153-9264172,9263682-9263901,9263389-9263599,9263084-9263308,9262805-9262996	AT4G16420.1  CDS  gene_syn ADA2B, DL4235C, FCAALL.57, HOMOLOG OF YEAST ADA2 2B, PROPORZ1, PRZ1  gene ADA2B  function Transcriptional co-activator. Essential for the developmental switch from cell proliferation to cell differentiation in response to variations in auxin and cytokinin concentrations.  go_component nucleus|GO:0005634|12747832|IDA  go_process cold acclimation|GO:0009631|12615937|IMP  go_process response to auxin stimulus|GO:0009733|12747832|IMP  go_process response to cytokinin stimulus|GO:0009735|12747832|IMP  go_process regulation of cell proliferation|GO:0042127|12747832|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  go_function transcription coactivator activity|GO:0003713|12747832|IDA  product ADA2B (HOMOLOG OF YEAST ADA2 2B); DNA binding / transcription coactivator/ transcription factor  note HOMOLOG OF YEAST ADA2 2B (ADA2B); FUNCTIONS IN: transcription coactivator activity, transcription factor activity, DNA binding; INVOLVED IN: cold acclimation, response to auxin stimulus, response to cytokinin stimulus, regulation of cell proliferation; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SANT, eukarya (InterPro:IPR017884), SANT, DNA-binding (InterPro:IPR001005), Transcriptional adaptor 2 (InterPro:IPR016827), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), SWIRM (InterPro:IPR007526), Zinc finger, ZZ-type (InterPro:IPR000433), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ADA2A (HOMOLOG OF YEAST ADA2 2A); DNA binding / transcription factor/ zinc ion binding (TAIR:AT3G07740.1); Has 1056 Blast hits to 1025 proteins in 152 species: Archae - 0; Bacteria - 6; Metazoa - 526; Fungi - 180; Plants - 111; Viruses - 0; Other Eukaryotes - 233 (source: NCBI BLink).  protein_id AT4G16420.1p  transcript_id AT4G16420.1  protein_id AT4G16420.1p  transcript_id AT4G16420.1  
At4g16430	chr4:009267599	0.0	W/9267599-9269002	AT4G16430.1  CDS  gene_syn DL4240W, FCAALL.202  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: ATAIB (ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR); DNA binding / transcription factor (TAIR:AT2G46510.1); Has 1659 Blast hits to 1487 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 80; Fungi - 15; Plants - 1562; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G16430.1p  transcript_id AT4G16430.1  protein_id AT4G16430.1p  transcript_id AT4G16430.1  
At4g16440	chr4:009271385	0.0	C/9271385-9271510,9271158-9271225,9270741-9271081,9270536-9270662,9270296-9270461,9270145-9270194,9269887-9270058,9269668-9269794,9269489-9269583,9269263-9269415	AT4G16440.1  CDS  gene_syn DL4245C, FCAALL.367  function Encodes a [FeFe]-hydrogenase-like protein named Gollum (for Growth in different Oxygen LeveLs in& 64258;Uences Morphogenesis). Heterologous expression of Gollum in E. coli indicates that it probably contains two [Fe-S] clusters with different magnetic properties. Sequence alignment analysis indicates that these two clusters would be topologically equivalent to the mesial and proximal [Fe-S] centers of [FeFe]-hydrogenases. Knockdown mutants (RNAi) show a dwarf phenotype at the normal atmospheric partial oxygen pressure of 21 kPa. This dwarf phenotype could be rescued by growing the plant under low oxygen pressure (5kPa), suggesting a role for this gene in oxygen sensing.  go_function ferredoxin hydrogenase activity|GO:0008901||ISS  product ferredoxin hydrogenase  note ferredoxin hydrogenase; FUNCTIONS IN: ferredoxin hydrogenase activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Iron hydrogenase, large subunit, C-terminal (InterPro:IPR004108), Iron hydrogenase (InterPro:IPR009016), Iron hydrogenase, small subunit-like (InterPro:IPR003149); Has 1180 Blast hits to 1122 proteins in 331 species: Archae - 0; Bacteria - 663; Metazoa - 177; Fungi - 137; Plants - 41; Viruses - 0; Other Eukaryotes - 162 (source: NCBI BLink).  protein_id AT4G16440.1p  transcript_id AT4G16440.1  protein_id AT4G16440.1p  transcript_id AT4G16440.1  
At4g16442	chr4:009272807	0.0	C/9272807-9272970,9272572-9272704,9272042-9272293	AT4G16442.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane family protein  note integral membrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT2G35760.1); Has 307 Blast hits to 307 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 307; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G16442.1p  transcript_id AT4G16442.1  protein_id AT4G16442.1p  transcript_id AT4G16442.1  
At4g16444	chr4:009275946	0.0	C/9275946-9276056,9275791-9275870,9275597-9275667,9275235-9275305,9275069-9275150,9274936-9274985,9274791-9274862	AT4G16444.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 59 Blast hits to 59 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 38; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G16444.1p  transcript_id AT4G16444.1  protein_id AT4G16444.1p  transcript_id AT4G16444.1  
At4g16447	chr4:009278829	0.0	W/9278829-9279206	AT4G16447.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 8 growth stages; Has 8 Blast hits to 8 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G16447.1p  transcript_id AT4G16447.1  protein_id AT4G16447.1p  transcript_id AT4G16447.1  
At4g16450	chr4:009280132	0.0	W/9280132-9280285,9280375-9280541	AT4G16450.1  CDS  gene_syn DL4250W, FCAALL.388  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|12837548|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial membrane|GO:0031966|16407270|IDA  go_component respiratory chain complex I|GO:0045271|16407270|IDA  go_process photorespiration|GO:0009853|16407270|TAS  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, respiratory chain complex I, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 50 Blast hits to 50 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 25; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G16450.1p  transcript_id AT4G16450.1  protein_id AT4G16450.1p  transcript_id AT4G16450.1  
At4g16451	chr4:009280857	0.0	C/9280857-9281000	AT4G16451.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G16451.1p  transcript_id AT4G16451.1  protein_id AT4G16451.1p  transcript_id AT4G16451.1  
At4g16460	chr4:009285629	0.0	W/9285629-9285896,9285989-9286138,9286220-9286315,9286478-9286494	AT4G16460.1  CDS  gene_syn DL4255W, FCAALL.371  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: 4 anthesis; Has 50 Blast hits to 50 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 4; Plants - 7; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT4G16460.1p  transcript_id AT4G16460.1  protein_id AT4G16460.1p  transcript_id AT4G16460.1  
At4g16460	chr4:009285629	0.0	W/9285629-9285896,9285989-9286138,9286220-9286315,9286478-9286494	AT4G16460.2  CDS  gene_syn DL4255W, FCAALL.371  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: 4 anthesis; Has 50 Blast hits to 50 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 4; Plants - 7; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT4G16460.2p  transcript_id AT4G16460.2  protein_id AT4G16460.2p  transcript_id AT4G16460.2  
At4g16460	chr4:009285629	0.0	W/9285629-9285896,9285989-9286138,9286220-9286315,9286478-9286494	AT4G16460.3  CDS  gene_syn DL4255W, FCAALL.371  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: 4 anthesis; Has 50 Blast hits to 50 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 4; Plants - 7; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT4G16460.3p  transcript_id AT4G16460.3  protein_id AT4G16460.3p  transcript_id AT4G16460.3  
At4g16465	chr4:009287209	0.0	W/9287209-9287282	AT4G16465.1  tRNA  gene_syn 68169.TRNA-THR-3  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Thr (anticodon: AGT)  transcript_id AT4G16465.1  
At4g16470	chr4:009289342	0.0	C/9289342-9289541,9288899-9289167,9287862-9288850	AT4G16470.1  CDS  gene_syn DL4260C, FCAALL.374  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: CRR22 (CHLORORESPIRATORY REDUCTION22); endonuclease (TAIR:AT1G11290.1); Has 12729 Blast hits to 4676 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 25; Plants - 12474; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink).  protein_id AT4G16470.1p  transcript_id AT4G16470.1  protein_id AT4G16470.1p  transcript_id AT4G16470.1  
At4g16475	chr4:009289685	0.0	W/9289685-9289765	AT4G16475.1  tRNA  gene_syn 68169.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: CAG)  transcript_id AT4G16475.1  
At4g16480	chr4:009291246	0.0	W/9291246-9291788,9291878-9293083	AT4G16480.1  CDS  gene_syn ATINT4, DL4265W, FCAALL.375, INOSITOL TRANSPORTER 4, INT4  gene INT4  function Encodes a high affinity H+:<i>myo</i>-inositol symporter. The only other compound shown to be transported was pinitol, a methylated derivative of <i>myo</i>-inositol.  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component plasma membrane|GO:0005886|16603666|IDA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function myo-inositol:hydrogen symporter activity|GO:0005366|16603666|IGI  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product INT4 (INOSITOL TRANSPORTER 4); carbohydrate transmembrane transporter/ myo-inositol:hydrogen symporter/ sugar:hydrogen symporter  note INOSITOL TRANSPORTER 4 (INT4); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, myo-inositol:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: INT3 (NOSITOL TRANSPORTER 3); carbohydrate transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT2G35740.1); Has 32197 Blast hits to 25755 proteins in 1484 species: Archae - 356; Bacteria - 14018; Metazoa - 6045; Fungi - 7616; Plants - 2471; Viruses - 2; Other Eukaryotes - 1689 (source: NCBI BLink).  protein_id AT4G16480.1p  transcript_id AT4G16480.1  protein_id AT4G16480.1p  transcript_id AT4G16480.1  
At4g16490	chr4:009294175	0.0	C/9294175-9295530,9293891-9293953	AT4G16490.1  CDS  gene_syn DL4270C, FCAALL.59  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein (TAIR:AT3G01400.1); Has 213 Blast hits to 211 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT4G16490.1p  transcript_id AT4G16490.1  protein_id AT4G16490.1p  transcript_id AT4G16490.1  
At4g16500	chr4:009301530	0.0	C/9301530-9301883	AT4G16500.1  CDS  gene_syn DL4275C, FCAALL.171  go_component cell wall|GO:0005618|15593128|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_function cysteine-type endopeptidase inhibitor activity|GO:0004869||IEA  go_process biological_process|GO:0008150||ND  go_function enzyme regulator activity|GO:0030234||ISS  product cysteine protease inhibitor family protein / cystatin family protein  note cysteine protease inhibitor family protein / cystatin family protein; FUNCTIONS IN: enzyme regulator activity, cysteine-type endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I25, cystatin, conserved site (InterPro:IPR018073), Proteinase inhibitor I25, cystatin (InterPro:IPR000010); BEST Arabidopsis thaliana protein match is: cysteine protease inhibitor, putative / cystatin, putative (TAIR:AT5G47550.1); Has 461 Blast hits to 440 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 452; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G16500.1p  transcript_id AT4G16500.1  protein_id AT4G16500.1p  transcript_id AT4G16500.1  
At4g16510	chr4:009302816	0.0	W/9302816-9303124,9303275-9303352,9303438-9303522,9303617-9303705,9304732-9304869	AT4G16510.1  CDS  gene_syn DL4280W, FCAALL.85  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product YbaK/prolyl-tRNA synthetase-related  note YbaK/prolyl-tRNA synthetase-related; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: YbaK/aminoacyl-tRNA synthetase associated region (InterPro:IPR007214); Has 45 Blast hits to 45 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT4G16510.1p  transcript_id AT4G16510.1  protein_id AT4G16510.1p  transcript_id AT4G16510.1  
At4g16515	chr4:009305386	0.0	C/9305386-9305646	AT4G16515.1  CDS  gene_syn GLV1, GOLVEN 1  go_component endomembrane system|GO:0012505||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G16515.1p  transcript_id AT4G16515.1  protein_id AT4G16515.1p  transcript_id AT4G16515.1  
At4g16520	chr4:009308077	0.0	C/9308077-9308113,9307927-9307982,9307344-9307396,9307134-9307252,9306882-9306982	AT4G16520.1  CDS  gene_syn ATG8F, DL4285C, FCAALL.383, autophagy 8f  gene ATG8F  go_process autophagy|GO:0006914||ISS  go_function microtubule binding|GO:0008017||ISS  product ATG8F (autophagy 8f); microtubule binding  note autophagy 8f (ATG8F); FUNCTIONS IN: microtubule binding; INVOLVED IN: autophagy; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: AtATG8e; microtubule binding (TAIR:AT2G45170.2); Has 1164 Blast hits to 1162 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 582; Fungi - 125; Plants - 171; Viruses - 3; Other Eukaryotes - 283 (source: NCBI BLink).  protein_id AT4G16520.1p  transcript_id AT4G16520.1  protein_id AT4G16520.1p  transcript_id AT4G16520.1  
At4g16520	chr4:009308077	0.0	C/9308077-9308113,9307927-9307982,9307344-9307396,9307134-9307252,9306882-9306982	AT4G16520.2  CDS  gene_syn ATG8F, DL4285C, FCAALL.383, autophagy 8f  gene ATG8F  go_process autophagy|GO:0006914||ISS  go_function microtubule binding|GO:0008017||ISS  product ATG8F (autophagy 8f); microtubule binding  note autophagy 8f (ATG8F); FUNCTIONS IN: microtubule binding; INVOLVED IN: autophagy; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: AtATG8e; microtubule binding (TAIR:AT2G45170.2); Has 1164 Blast hits to 1162 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 582; Fungi - 125; Plants - 171; Viruses - 3; Other Eukaryotes - 283 (source: NCBI BLink).  protein_id AT4G16520.2p  transcript_id AT4G16520.2  protein_id AT4G16520.2p  transcript_id AT4G16520.2  
At4g16530	chr4:009311355	0.0	W/9311355-9313005,9313719-9314472,9315548-9315554	AT4G16530.1  CDS  gene_syn DL4290W, FCAALL.390  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF577 (InterPro:IPR007598); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G37410.1); Has 2041 Blast hits to 1419 proteins in 223 species: Archae - 2; Bacteria - 154; Metazoa - 551; Fungi - 236; Plants - 88; Viruses - 14; Other Eukaryotes - 996 (source: NCBI BLink).  protein_id AT4G16530.1p  transcript_id AT4G16530.1  protein_id AT4G16530.1p  transcript_id AT4G16530.1  
At4g16540	chr4:009317117	0.0	C/9317117-9317153,9316669-9317016,9316551-9316618,9316023-9316268	AT4G16540.1  CDS  gene_syn DL4295C, FCAALL.391  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_component cellular_component|GO:0005575||ND  product heat shock protein-related  note heat shock protein-related; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), Small heat shock protein, predicted, plant (InterPro:IPR016952), Peptidase A1 (InterPro:IPR001461), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: heat shock protein-related (TAIR:AT2G03020.2); Has 76 Blast hits to 58 proteins in 14 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G16540.1p  transcript_id AT4G16540.1  protein_id AT4G16540.1p  transcript_id AT4G16540.1  
At4g16550	chr4:009324218	0.0	C/9324218-9324254,9323727-9324113,9323595-9323621,9323443-9323493,9322678-9323076,9322574-9322606,9322436-9322465,9322254-9322379,9322120-9322146,9322011-9322034,9321666-9321875,9320729-9320859,9319247-9319589,9319131-9319160,9318919-9318969,9318442-9318767	AT4G16550.1  CDS  gene_syn DL4300C, FCAALL.394  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_component cellular_component|GO:0005575||ND  product heat shock protein-related  note heat shock protein-related; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), Peptidase A1 (InterPro:IPR001461), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: heat shock protein-related (TAIR:AT4G16560.1); Has 110 Blast hits to 59 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 110; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G16550.1p  transcript_id AT4G16550.1  protein_id AT4G16550.1p  transcript_id AT4G16550.1  
At4g16560	chr4:009328589	0.0	C/9328589-9328628,9328080-9328478,9327976-9328008,9327838-9327867,9327656-9327781,9327522-9327548,9327413-9327436,9327068-9327277,9326199-9326262,9326038-9326148,9325901-9325992,9325772-9325807,9325497-9325517,9325355-9325393,9325238-9325261,9324746-9325068	AT4G16560.1  CDS  gene_syn DL4305C, FCAALL.397  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_component cellular_component|GO:0005575||ND  product heat shock protein-related  note heat shock protein-related; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), Peptidase A1 (InterPro:IPR001461), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: heat shock protein-related (TAIR:AT4G16550.1); Has 90 Blast hits to 51 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G16560.1p  transcript_id AT4G16560.1  protein_id AT4G16560.1p  transcript_id AT4G16560.1  
At4g16563	chr4:009329933	0.0	C/9329933-9331432	AT4G16563.1  CDS  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plant-type cell wall; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT5G45120.1); Has 1308 Blast hits to 1249 proteins in 96 species: Archae - 0; Bacteria - 0; Metazoa - 90; Fungi - 75; Plants - 1069; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT4G16563.1p  transcript_id AT4G16563.1  protein_id AT4G16563.1p  transcript_id AT4G16563.1  
At4g16566	chr4:009335810	0.0	C/9335810-9335884,9335669-9335715,9335438-9335514,9335287-9335350,9335096-9335173,9334873-9334972	AT4G16566.1  CDS  go_component peroxisome|GO:0005777|17951448|IDA  go_function catalytic activity|GO:0003824||IEA  go_process nucleotide metabolic process|GO:0009117||ISS  go_function nucleotide binding|GO:0000166||ISS  product histidine triad family protein / HIT family protein  note histidine triad family protein / HIT family protein; FUNCTIONS IN: nucleotide binding, catalytic activity; INVOLVED IN: nucleotide metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histidine triad-like motif (InterPro:IPR011146), Histidine triad (HIT) protein (InterPro:IPR001310), Histidine triad motif (InterPro:IPR011151); Has 3552 Blast hits to 3551 proteins in 1132 species: Archae - 72; Bacteria - 1872; Metazoa - 537; Fungi - 82; Plants - 54; Viruses - 0; Other Eukaryotes - 935 (source: NCBI BLink).  protein_id AT4G16566.1p  transcript_id AT4G16566.1  protein_id AT4G16566.1p  transcript_id AT4G16566.1  
At4g16570	chr4:009336815	0.0	W/9336815-9337137,9337236-9337452,9337532-9337657,9337757-9337921,9337999-9338117,9338336-9338415,9338581-9338855,9339056-9339286,9339460-9339533,9339626-9339719,9339804-9339953,9340035-9340112,9340218-9340314,9340547-9340692	AT4G16570.1  CDS  gene_syn ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 7, ATPRMT7, DL4310W, FCAALL.195, PRMT7, PROTEIN ARGININE METHYLTRANSFERASE 7  gene PRMT7  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid methylation|GO:0006479||IEA  go_function methyltransferase activity|GO:0008168||IEA  product PRMT7 (PROTEIN ARGININE METHYLTRANSFERASE 7); methyltransferase  note PROTEIN ARGININE METHYLTRANSFERASE 7 (PRMT7); FUNCTIONS IN: methyltransferase activity; INVOLVED IN: protein amino acid methylation; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein arginine N-methyltransferase (InterPro:IPR014644); BEST Arabidopsis thaliana protein match is: PRMT11 (ARGININE METHYLTRANSFERASE 11); protein-arginine N-methyltransferase (TAIR:AT4G29510.1); Has 1211 Blast hits to 1182 proteins in 199 species: Archae - 19; Bacteria - 37; Metazoa - 719; Fungi - 149; Plants - 138; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT4G16570.1p  transcript_id AT4G16570.1  protein_id AT4G16570.1p  transcript_id AT4G16570.1  
At4g16580	chr4:009341152	0.0	C/9341152-9342555	AT4G16580.1  CDS  gene_syn DL4315C, FCAALL.400  go_function catalytic activity|GO:0003824||IEA  product catalytic  note catalytic; FUNCTIONS IN: catalytic activity; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932); BEST Arabidopsis thaliana protein match is: 5-azacytidine resistance protein -related (TAIR:AT5G66720.1); Has 560 Blast hits to 550 proteins in 150 species: Archae - 0; Bacteria - 2; Metazoa - 153; Fungi - 152; Plants - 117; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).  protein_id AT4G16580.1p  transcript_id AT4G16580.1  protein_id AT4G16580.1p  transcript_id AT4G16580.1  
At4g16590	chr4:009345757	0.0	W/9345757-9345810,9346643-9346895,9346970-9347080,9347454-9347590,9347717-9347830,9348276-9348475,9348553-9348741,9348892-9349039	AT4G16590.1  CDS  gene_syn ATCSLA01, ATCSLA1, CELLULOSE SYNTHASE-LIKE A1, CSLA01, DL4320W, FCAALL.402  gene ATCSLA01  function encodes a gene similar to cellulose synthase  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  go_function glucosyltransferase activity|GO:0046527||ISS  product ATCSLA01; cellulose synthase/ glucosyltransferase/ transferase, transferring glycosyl groups  note ATCSLA01; FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups, glucosyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: ATCSLA11; cellulose synthase/ transferase, transferring glycosyl groups (TAIR:AT5G16190.1); Has 2503 Blast hits to 2501 proteins in 704 species: Archae - 78; Bacteria - 1788; Metazoa - 32; Fungi - 64; Plants - 294; Viruses - 11; Other Eukaryotes - 236 (source: NCBI BLink).  protein_id AT4G16590.1p  transcript_id AT4G16590.1  protein_id AT4G16590.1p  transcript_id AT4G16590.1  
At4g16600	chr4:009350039	0.0	W/9350039-9350370,9351278-9351741,9351821-9351968,9352167-9352707	AT4G16600.1  CDS  gene_syn DL4325W, FCAALL.404  go_component endomembrane system|GO:0012505||IEA  go_process biosynthetic process|GO:0009058||ISS  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note transferase, transferring glycosyl groups / transferase, transferring hexosyl groups; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process, biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: glycogenin glucosyltransferase (glycogenin)-related (TAIR:AT2G35710.1); Has 661 Blast hits to 660 proteins in 144 species: Archae - 0; Bacteria - 38; Metazoa - 213; Fungi - 113; Plants - 251; Viruses - 2; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT4G16600.1p  transcript_id AT4G16600.1  protein_id AT4G16600.1p  transcript_id AT4G16600.1  
At4g16610	chr4:009354568	0.0	C/9354568-9355182	AT4G16610.1  CDS  gene_syn DL4330C, FCAALL.418  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT1G02030.1); Has 175 Blast hits to 172 proteins in 40 species: Archae - 0; Bacteria - 2; Metazoa - 47; Fungi - 10; Plants - 107; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT4G16610.1p  transcript_id AT4G16610.1  protein_id AT4G16610.1p  transcript_id AT4G16610.1  
At4g16620	chr4:009359681	0.0	C/9359681-9359871,9359514-9359579,9359255-9359371,9358925-9359159,9358657-9358821,9358437-9358588,9358185-9358338	AT4G16620.1  CDS  gene_syn DL4335C, FCAALL.421  go_component membrane|GO:0016020|11152613|ISS  go_function molecular_function|GO:0003674||ND  product integral membrane family protein / nodulin MtN21-related  note integral membrane family protein / nodulin MtN21-related; FUNCTIONS IN: molecular_function unknown; LOCATED IN: membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT5G47470.1); Has 1043 Blast hits to 1035 proteins in 196 species: Archae - 2; Bacteria - 391; Metazoa - 2; Fungi - 3; Plants - 607; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT4G16620.1p  transcript_id AT4G16620.1  protein_id AT4G16620.1p  transcript_id AT4G16620.1  
At4g16630	chr4:009366054	0.0	C/9366054-9366449,9365786-9365971,9365636-9365704,9365421-9365527,9365241-9365319,9364925-9365098,9364575-9364723,9364359-9364454,9364143-9364245,9363995-9364057,9363838-9363899,9363639-9363735,9363424-9363542,9363290-9363332,9363108-9363209,9362932-9363024,9362704-9362823,9362285-9362580,9362176-9362191	AT4G16630.1  CDS  gene_syn DL4340C, FCAALL.424  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_component cellular_component|GO:0005575||ND  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD/DEAH box helicase, putative (RH28)  note DEAD/DEAH box helicase, putative (RH28); FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (TAIR:AT1G16280.1); Has 75014 Blast hits to 49574 proteins in 2104 species: Archae - 542; Bacteria - 21437; Metazoa - 22382; Fungi - 7369; Plants - 2826; Viruses - 629; Other Eukaryotes - 19829 (source: NCBI BLink).  protein_id AT4G16630.1p  transcript_id AT4G16630.1  protein_id AT4G16630.1p  transcript_id AT4G16630.1  
At4g16640	chr4:009367396	0.0	C/9367396-9368490	AT4G16640.1  CDS  gene_syn DL4345C, FCAALL.425  go_process proteolysis|GO:0006508||IEA  go_process metabolic process|GO:0008152||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_function metallopeptidase activity|GO:0008237||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process proteolysis|GO:0006508||ISS  go_function metalloendopeptidase activity|GO:0004222||ISS  product matrix metalloproteinase, putative  note matrix metalloproteinase, putative; FUNCTIONS IN: metallopeptidase activity, metalloendopeptidase activity; INVOLVED IN: proteolysis, metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase M10A and M12B, matrixin and adamalysin (InterPro:IPR001818), Peptidoglycan binding-like (InterPro:IPR002477), Peptidase, metallopeptidases (InterPro:IPR006026); BEST Arabidopsis thaliana protein match is: matrix metalloproteinase (TAIR:AT2G45040.1); Has 2200 Blast hits to 2021 proteins in 162 species: Archae - 2; Bacteria - 79; Metazoa - 1899; Fungi - 3; Plants - 83; Viruses - 39; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT4G16640.1p  transcript_id AT4G16640.1  protein_id AT4G16640.1p  transcript_id AT4G16640.1  
At4g16650	chr4:009372727	0.0	W/9372727-9372978,9373066-9373156,9373485-9373561,9373707-9373795,9373924-9374113,9374238-9374419,9374552-9374654,9374905-9375233,9375574-9375910	AT4G16650.1  CDS  gene_syn DL4350W, FCAALL.427  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76270.1); Has 436 Blast hits to 428 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 436; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G16650.1p  transcript_id AT4G16650.1  protein_id AT4G16650.1p  transcript_id AT4G16650.1  
At4g16660	chr4:009377225	0.0	W/9377225-9377986,9378174-9378406,9378560-9378719,9378837-9379082,9379165-9379301,9379425-9379752,9379839-9380000,9380149-9380220,9380315-9380415,9380495-9380564,9380652-9380708,9380798-9380859,9380934-9381006,9381092-9381232	AT4G16660.1  CDS  gene_syn DL4355W, FCAALL.64  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_function ATP binding|GO:0005524||IEA  product heat shock protein 70, putative / HSP70, putative  note heat shock protein 70, putative / HSP70, putative; FUNCTIONS IN: ATP binding; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: heat shock protein, putative (TAIR:AT1G11660.1); Has 18930 Blast hits to 18189 proteins in 2776 species: Archae - 119; Bacteria - 6307; Metazoa - 3629; Fungi - 1186; Plants - 638; Viruses - 97; Other Eukaryotes - 6954 (source: NCBI BLink).  protein_id AT4G16660.1p  transcript_id AT4G16660.1  protein_id AT4G16660.1p  transcript_id AT4G16660.1  
At4g16670	chr4:009385326	0.0	W/9385326-9385676,9386180-9386570,9386693-9386893,9387023-9387072,9387160-9387217,9387332-9387570	AT4G16670.1  CDS  gene_syn DL4360W, FCAALL.2  go_component cellular_component|GO:0005575||ND  go_process signal transduction|GO:0007165|15358268|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product phosphoinositide binding  note phosphoinositide binding; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin-like, plant (InterPro:IPR013666), Protein of unknown function DUF828, plant (InterPro:IPR008546), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: phosphoinositide binding (TAIR:AT4G17350.1); Has 124 Blast hits to 112 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 117; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G16670.1p  transcript_id AT4G16670.1  protein_id AT4G16670.1p  transcript_id AT4G16670.1  
At4g16680	chr4:009390453	0.0	C/9390453-9390774,9388071-9390400	AT4G16680.1  CDS  gene_syn DL4365C, FCAALL.3  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component cellular_component|GO:0005575||ND  go_function RNA helicase activity|GO:0003724||ISS  product RNA helicase, putative  note RNA helicase, putative; FUNCTIONS IN: in 7 functions; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, male gametophyte, sepal, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Helicase-associated region (InterPro:IPR007502), ATPase, AAA+ type, core (InterPro:IPR003593), Region of unknown function DUF1605 (InterPro:IPR011709), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ESP3 (ENHANCED SILENCING PHENOTYPE 3); ATP binding / ATP-dependent RNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding (TAIR:AT1G32490.1); Has 7638 Blast hits to 6992 proteins in 1063 species: Archae - 14; Bacteria - 2064; Metazoa - 2128; Fungi - 866; Plants - 401; Viruses - 549; Other Eukaryotes - 1616 (source: NCBI BLink).  protein_id AT4G16680.1p  transcript_id AT4G16680.1  protein_id AT4G16680.1p  transcript_id AT4G16680.1  
At4g16690	chr4:009393044	0.0	C/9393044-9393424,9392804-9392929,9392405-9392686	AT4G16690.1  CDS  gene_syn ARABIDOPSIS THALIANA METHYL ESTERASE 16, ATMES16, DL4370C, FCAALL.12, MES16, METHYL ESTERASE 16  gene MES16  function Encodes a protein shown to have carboxylesterase activity, methyl IAA esterase activity, and methyl jasmonate esterase activity in vitro. This protein does not act on MeSA, MeGA4, or MEGA9 in vitro. Although MES16 is similar to MES17, a MeIAA hydrolase, two mes16 mutant lines (SALK_151578) and (SALK_139756) do not show altered sensitivity to MeIAA in root growth assays. MES16 transcripts appear to be more than 10-fold less abundant than those of MES17 in roots.  go_component cellular_component|GO:0005575||ND  go_function catalytic activity|GO:0003824||ISS  go_function hydrolase activity, acting on ester bonds|GO:0016788|18467465|IDA  go_function methyl indole-3-acetate esterase activity|GO:0080030|18467465|IDA  go_function methyl jasmonate esterase activity|GO:0080032|18467465|IDA  product MES16 (METHYL ESTERASE 16); catalytic/ hydrolase, acting on ester bonds / methyl indole-3-acetate esterase/ methyl jasmonate esterase  note METHYL ESTERASE 16 (MES16); FUNCTIONS IN: hydrolase activity, acting on ester bonds, methyl jasmonate esterase activity, catalytic activity, methyl indole-3-acetate esterase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: MES18 (METHYL ESTERASE 18); hydrolase/ hydrolase, acting on ester bonds / methyl indole-3-acetate esterase (TAIR:AT5G58310.1); Has 769 Blast hits to 769 proteins in 183 species: Archae - 2; Bacteria - 327; Metazoa - 0; Fungi - 11; Plants - 327; Viruses - 3; Other Eukaryotes - 99 (source: NCBI BLink).  protein_id AT4G16690.1p  transcript_id AT4G16690.1  protein_id AT4G16690.1p  transcript_id AT4G16690.1  
At4g16695	chr4:009394259	0.0	W/9394259-9394264,9394421-9394569,9395061-9395079	AT4G16695.3  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system.  protein_id AT4G16695.3p  transcript_id AT4G16695.3  protein_id AT4G16695.3p  transcript_id AT4G16695.3  
At4g16695	chr4:009394259	0.0	W/9394259-9394264,9394421-9394569,9395233-9395251	AT4G16695.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G16695.1p  transcript_id AT4G16695.1  protein_id AT4G16695.1p  transcript_id AT4G16695.1  
At4g16695	chr4:009394259	0.0	W/9394259-9394264,9394421-9394573	AT4G16695.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G16695.2p  transcript_id AT4G16695.2  protein_id AT4G16695.2p  transcript_id AT4G16695.2  
At4g16700	chr4:009398060	0.0	C/9398060-9398261,9397789-9397877,9397641-9397694,9397483-9397548,9397347-9397407,9397140-9397249,9396814-9397055,9396634-9396740,9396446-9396513,9396276-9396353,9396083-9396205,9395815-9395976	AT4G16700.1  CDS  gene_syn DL4375C, FCAALL.4, PSD1, phosphatidylserine decarboxylase 1  gene PSD1  function Encodes a mitochondrial phosphatidylserine decarboxylase. Expressed mainly in roots and flowers.  go_process phospholipid biosynthetic process|GO:0008654||IEA  go_component mitochondrion|GO:0005739|17449644|IDA  go_function phosphatidylserine decarboxylase activity|GO:0004609|17449644|IMP  go_function phosphatidylserine decarboxylase activity|GO:0004609||ISS  product PSD1 (phosphatidylserine decarboxylase 1); phosphatidylserine decarboxylase  note phosphatidylserine decarboxylase 1 (PSD1); FUNCTIONS IN: phosphatidylserine decarboxylase activity; INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: mitochondrion; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylserine decarboxylase-related (InterPro:IPR003817), Phosphatidylserine decarboxylase (InterPro:IPR005221); Has 1997 Blast hits to 1985 proteins in 745 species: Archae - 0; Bacteria - 1224; Metazoa - 180; Fungi - 210; Plants - 35; Viruses - 0; Other Eukaryotes - 348 (source: NCBI BLink).  protein_id AT4G16700.1p  transcript_id AT4G16700.1  protein_id AT4G16700.1p  transcript_id AT4G16700.1  
At4g16710	chr4:009398818	0.0	W/9398818-9398991,9399157-9399256,9399362-9399618	AT4G16710.1  CDS  gene_syn DL4380W, FCAALL.10  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process lipid glycosylation|GO:0030259||IEA  go_function transferase activity, transferring hexosyl groups|GO:0016758||IEA  go_function carbohydrate binding|GO:0030246||IEA  go_component cellular_component|GO:0005575||ND  go_process biosynthetic process|GO:0009058||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyltransferase family protein 28  note glycosyltransferase family protein 28; FUNCTIONS IN: transferase activity, transferring hexosyl groups, carbohydrate binding, transferase activity, transferring glycosyl groups; INVOLVED IN: lipid glycosylation, biosynthetic process, carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 28, C-terminal (InterPro:IPR007235); Has 407 Blast hits to 406 proteins in 191 species: Archae - 8; Bacteria - 118; Metazoa - 104; Fungi - 82; Plants - 24; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT4G16710.1p  transcript_id AT4G16710.1  protein_id AT4G16710.1p  transcript_id AT4G16710.1  
At4g16710	chr4:009398818	0.0	W/9398818-9398991,9399157-9399256,9399362-9399618	AT4G16710.2  CDS  gene_syn DL4380W, FCAALL.10  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process lipid glycosylation|GO:0030259||IEA  go_function transferase activity, transferring hexosyl groups|GO:0016758||IEA  go_function carbohydrate binding|GO:0030246||IEA  go_component cellular_component|GO:0005575||ND  go_process biosynthetic process|GO:0009058||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyltransferase family protein 28  note glycosyltransferase family protein 28; FUNCTIONS IN: carbohydrate binding, transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: lipid glycosylation, biosynthetic process, carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 28, C-terminal (InterPro:IPR007235); Has 407 Blast hits to 406 proteins in 191 species: Archae - 8; Bacteria - 118; Metazoa - 104; Fungi - 82; Plants - 24; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT4G16710.2p  transcript_id AT4G16710.2  protein_id AT4G16710.2p  transcript_id AT4G16710.2  
At4g16720	chr4:009401312	0.0	C/9401312-9401315,9400999-9401165,9400488-9400685,9400156-9400401	AT4G16720.1  CDS  gene_syn DL4385C, FCAALL.416  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L15 (RPL15A)  note 60S ribosomal protein L15 (RPL15A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L15e (InterPro:IPR000439), Ribosomal protein L23/L15e, core (InterPro:IPR012678); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L15 (RPL15B) (TAIR:AT4G17390.1); Has 971 Blast hits to 970 proteins in 319 species: Archae - 217; Bacteria - 0; Metazoa - 330; Fungi - 103; Plants - 125; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink).  protein_id AT4G16720.1p  transcript_id AT4G16720.1  protein_id AT4G16720.1p  transcript_id AT4G16720.1  
At4g16730	chr4:009403119	0.0	W/9403119-9403163,9403450-9403717,9403949-9404345,9404441-9404659,9404838-9404976,9405050-9405298,9405701-9406003	AT4G16730.1  CDS  gene_syn DL4390W, FCAALL.15  go_process metabolic process|GO:0008152||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function lyase activity|GO:0016829||IEA  product lyase/ magnesium ion binding  note lyase/ magnesium ion binding; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; EXPRESSED IN: sepal, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: ATTPS03; (E)-beta-ocimene synthase/ myrcene synthase (TAIR:AT4G16740.1); Has 1100 Blast hits to 1087 proteins in 140 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1095; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G16730.1p  transcript_id AT4G16730.1  protein_id AT4G16730.1p  transcript_id AT4G16730.1  
At4g16740	chr4:009407856	0.0	W/9407856-9408002,9408103-9408385,9408598-9408970,9409408-9409626,9409716-9409854,9410163-9410402,9410581-9410877	AT4G16740.1  CDS  gene_syn ATTPS03, DL4395W, FCAALL.18  gene ATTPS03  function Monoterpene synthase, catalyzes the formation of the acyclic monoterpene (E)-beta-ocimene in response to wounding or treatment with jasmonic acid.  go_process response to wounding|GO:0009611|12624761|IEP  go_process monoterpenoid biosynthetic process|GO:0016099|12624761|IDA  go_function (E)-beta-ocimene synthase activity|GO:0034768|12624761|IDA  go_function myrcene synthase activity|GO:0050551|12624761|IDA  product ATTPS03; (E)-beta-ocimene synthase/ myrcene synthase  note ATTPS03; FUNCTIONS IN: myrcene synthase activity, (E)-beta-ocimene synthase activity; INVOLVED IN: monoterpenoid biosynthetic process, response to wounding; EXPRESSED IN: stem, leaf whorl, sepal, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: ATTPS-CIN (terpene synthase-like sequence-1,8-cineole); (E)-beta-ocimene synthase/ myrcene synthase (TAIR:AT3G25830.1); Has 1106 Blast hits to 1097 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1103; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G16740.1p  transcript_id AT4G16740.1  protein_id AT4G16740.1p  transcript_id AT4G16740.1  
At4g16740	chr4:009407856	0.0	W/9407856-9408002,9408103-9408385,9408598-9408970,9409408-9409626,9409716-9409884	AT4G16740.2  CDS  gene_syn ATTPS03, DL4395W, FCAALL.18  gene ATTPS03  function Monoterpene synthase, catalyzes the formation of the acyclic monoterpene (E)-beta-ocimene in response to wounding or treatment with jasmonic acid.  go_process response to wounding|GO:0009611|12624761|IEP  go_process monoterpenoid biosynthetic process|GO:0016099|12624761|IDA  go_function (E)-beta-ocimene synthase activity|GO:0034768|12624761|IDA  go_function myrcene synthase activity|GO:0050551|12624761|IDA  product ATTPS03; (E)-beta-ocimene synthase/ myrcene synthase  note ATTPS03; FUNCTIONS IN: myrcene synthase activity, (E)-beta-ocimene synthase activity; INVOLVED IN: monoterpenoid biosynthetic process, response to wounding; EXPRESSED IN: stem, leaf whorl, sepal, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: myrcene/ocimene synthase, putative (TAIR:AT3G25810.1); Has 1072 Blast hits to 1064 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1069; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G16740.2p  transcript_id AT4G16740.2  protein_id AT4G16740.2p  transcript_id AT4G16740.2  
At4g16745	chr4:009412185	0.0	W/9412185-9412625,9412702-9412832,9412906-9413254,9413346-9414053	AT4G16745.1  CDS  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product exostosin family protein  note exostosin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: exostosin family protein (TAIR:AT5G19670.1); Has 870 Blast hits to 866 proteins in 88 species: Archae - 0; Bacteria - 10; Metazoa - 274; Fungi - 4; Plants - 491; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).  protein_id AT4G16745.1p  transcript_id AT4G16745.1  protein_id AT4G16745.1p  transcript_id AT4G16745.1  
At4g16750	chr4:009421121	0.0	C/9421121-9421660	AT4G16750.1  CDS  gene_syn DL4400C, FCAALL.19  function encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.  go_component nucleus|GO:0005634|7919989|TAS  go_process multicellular organismal development|GO:0007275|9192694|ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|7919989|TAS  product DRE-binding transcription factor, putative  note DRE-binding transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: multicellular organismal development; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ERF38 (ERF FAMILY PROTEIN 38); DNA binding / transcription factor (TAIR:AT2G35700.1); Has 3803 Blast hits to 3703 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3797; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G16750.1p  transcript_id AT4G16750.1  protein_id AT4G16750.1p  transcript_id AT4G16750.1  
At4g16760	chr4:009428552	0.0	C/9428552-9428689,9428314-9428422,9428165-9428226,9427875-9428084,9427698-9427785,9427450-9427612,9427119-9427317,9426655-9426852,9426360-9426491,9425897-9426017,9425667-9425777,9425503-9425572,9425223-9425406,9424930-9425139	AT4G16760.1  CDS  gene_syn ACX1, ACYL-COA OXIDASE 1, ATACX1, DL4405C, FCAALL.119  gene ACX1  function Encodes a medium to long-chain acyl-CoA oxidase. Catalyzing the first step of fatty acid beta-oxidation. Gene expression is induced by wounding, drought stress, abscisic acid, and jasmonate.  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component peroxisome|GO:0005777|10571860|ISS  go_process long-chain fatty acid metabolic process|GO:0001676|10571860|IMP  go_process fatty acid beta-oxidation|GO:0006635|10571860|IDA  go_process fatty acid beta-oxidation|GO:0006635||NAS  go_process response to wounding|GO:0009611|17675405|IEP  go_function acyl-CoA oxidase activity|GO:0003997|10571860|IDA  go_function acyl-CoA oxidase activity|GO:0003997|10571860|ISS  go_function acyl-CoA oxidase activity|GO:0003997|16146525|IMP  product ACX1 (ACYL-COA OXIDASE 1); acyl-CoA oxidase  note ACYL-COA OXIDASE 1 (ACX1); FUNCTIONS IN: acyl-CoA oxidase activity; INVOLVED IN: response to cadmium ion, fatty acid beta-oxidation, long-chain fatty acid metabolic process, response to wounding; LOCATED IN: peroxisome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal (InterPro:IPR013764), Acyl-CoA dehydrogenase/oxidase, middle and N-terminal (InterPro:IPR009100), Acyl-CoA oxidase (InterPro:IPR012258), Acyl-CoA dehydrogenase/oxidase, N-terminal (InterPro:IPR013786), Acyl-CoA dehydrogenase/oxidase, central region (InterPro:IPR006091), Acyl-CoA oxidase, C-terminal (InterPro:IPR002655), Acyl-CoA dehydrogenase/oxidase C-terminal (InterPro:IPR009075); BEST Arabidopsis thaliana protein match is: ACX5 (ACYL-COA OXIDASE 5); FAD binding / acyl-CoA dehydrogenase/ acyl-CoA oxidase/ electron carrier/ oxidoreductase/ oxidoreductase, acting on the CH-CH group of donors (TAIR:AT2G35690.1); Has 5745 Blast hits to 5728 proteins in 715 species: Archae - 68; Bacteria - 3169; Metazoa - 1147; Fungi - 301; Plants - 150; Viruses - 0; Other Eukaryotes - 910 (source: NCBI BLink).  protein_id AT4G16760.1p  transcript_id AT4G16760.1  protein_id AT4G16760.1p  transcript_id AT4G16760.1  
At4g16765	chr4:009431713	0.0	C/9431713-9431791,9431558-9431638,9431429-9431480,9431002-9431123,9430744-9430844,9430605-9430663,9430467-9430527	AT4G16765.2  CDS  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function oxidoreductase activity|GO:0016491||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (TAIR:AT4G16770.1); Has 5034 Blast hits to 5027 proteins in 656 species: Archae - 0; Bacteria - 715; Metazoa - 91; Fungi - 587; Plants - 2493; Viruses - 0; Other Eukaryotes - 1148 (source: NCBI BLink).  protein_id AT4G16765.2p  transcript_id AT4G16765.2  protein_id AT4G16765.2p  transcript_id AT4G16765.2  
At4g16765	chr4:009431713	0.0	C/9431713-9431791,9431558-9431638,9431429-9431480,9431002-9431123,9430744-9430844,9430605-9430663,9430471-9430527,9430343-9430388,9430180-9430259,9429974-9430040	AT4G16765.1  CDS  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function oxidoreductase activity|GO:0016491||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, iron ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT1G35190.1); Has 5797 Blast hits to 5788 proteins in 680 species: Archae - 0; Bacteria - 737; Metazoa - 132; Fungi - 681; Plants - 2812; Viruses - 0; Other Eukaryotes - 1435 (source: NCBI BLink).  protein_id AT4G16765.1p  transcript_id AT4G16765.1  protein_id AT4G16765.1p  transcript_id AT4G16765.1  
At4g16770	chr4:009437061	0.0	C/9437061-9437168,9436697-9436889,9436490-9436570,9435874-9435925,9435641-9435762,9435413-9435513,9435265-9435324,9435116-9435160	AT4G16770.1  CDS  gene_syn DL4410C, FCAALL.233  go_component peroxisome|GO:0005777|12154131|IDA  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process flavonoid biosynthetic process|GO:0009813||ISS  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors  note iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding; INVOLVED IN: flavonoid biosynthetic process; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G16765.2); Has 6031 Blast hits to 6015 proteins in 680 species: Archae - 0; Bacteria - 734; Metazoa - 132; Fungi - 691; Plants - 2939; Viruses - 0; Other Eukaryotes - 1535 (source: NCBI BLink).  protein_id AT4G16770.1p  transcript_id AT4G16770.1  protein_id AT4G16770.1p  transcript_id AT4G16770.1  
At4g16780	chr4:009449291	0.0	W/9449291-9449450,9449554-9449852,9450121-9450200,9450289-9450604	AT4G16780.1  CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, ATHB-2, ATHB2, DL4415W, FCAALL.101, HAT4  gene ATHB-2  function Encodes a homeodomain-leucine zipper protein that is rapidly and strongly induced by changes in the ratio of red to far-red light. It is also involved in cell expansion and cell proliferation and in the response to auxin.  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process cell proliferation|GO:0008283|10477292|IMP  go_process shade avoidance|GO:0009641|16565297|IEP  go_process response to auxin stimulus|GO:0009733|10477292|IMP  go_process response to cytokinin stimulus|GO:0009735|16212609|IEP  go_process unidimensional cell growth|GO:0009826|10477292|IMP  go_process shoot morphogenesis|GO:0010016|8449400|IMP  go_process red or far red light signaling pathway|GO:0010017|17965713|IEP  go_process response to far red light|GO:0010218|8106086|IEP  go_process negative regulation of transcription|GO:0016481|10477292|IDA  go_process root development|GO:0048364|10477292|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein homodimerization activity|GO:0042803|8253077|IDA  go_function sequence-specific DNA binding|GO:0043565|8253077|IDA  product ATHB-2 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2); DNA binding / protein homodimerization/ sequence-specific DNA binding / transcription factor  note ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2 (ATHB-2); FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding, protein homodimerization activity, DNA binding; INVOLVED IN: in 11 processes; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: HD-ZIP protein, N-terminal (InterPro:IPR006712), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Homeodomain-like (InterPro:IPR009057), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: HAT2; DNA binding / transcription factor/ transcription repressor (TAIR:AT5G47370.1); Has 5670 Blast hits to 5588 proteins in 379 species: Archae - 0; Bacteria - 0; Metazoa - 3894; Fungi - 230; Plants - 1439; Viruses - 17; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT4G16780.1p  transcript_id AT4G16780.1  protein_id AT4G16780.1p  transcript_id AT4G16780.1  
At4g16790	chr4:009451747	0.0	C/9451747-9453168	AT4G16790.1  CDS  gene_syn DL4420C, FCAALL.137  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60380.1); Has 7748 Blast hits to 5665 proteins in 391 species: Archae - 4; Bacteria - 313; Metazoa - 3256; Fungi - 1084; Plants - 1874; Viruses - 244; Other Eukaryotes - 973 (source: NCBI BLink).  protein_id AT4G16790.1p  transcript_id AT4G16790.1  protein_id AT4G16790.1p  transcript_id AT4G16790.1  
At4g16800	chr4:009456196	0.0	C/9456196-9456309,9456024-9456098,9455619-9455709,9455486-9455537,9455285-9455388,9454931-9455184	AT4G16800.1  CDS  gene_syn DL4425C, FCAALL.21  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process fatty acid metabolic process|GO:0006631||ISS  go_function enoyl-CoA hydratase activity|GO:0004300||ISS  product enoyl-CoA hydratase, putative  note enoyl-CoA hydratase, putative; FUNCTIONS IN: enoyl-CoA hydratase activity, catalytic activity; INVOLVED IN: fatty acid metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Enoyl-CoA hydratase/isomerase, conserved site (InterPro:IPR018376), Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: ATDCI1 (DELTA(3,5),DELTA(2,4)-DIENOYL-COA ISOMERASE 1); delta3,5-delta2,4-dienoyl-CoA isomerase/ enoyl-CoA hydratase (TAIR:AT5G43280.1); Has 26657 Blast hits to 26652 proteins in 1337 species: Archae - 197; Bacteria - 14838; Metazoa - 1386; Fungi - 465; Plants - 347; Viruses - 0; Other Eukaryotes - 9424 (source: NCBI BLink).  protein_id AT4G16800.1p  transcript_id AT4G16800.1  protein_id AT4G16800.1p  transcript_id AT4G16800.1  
At4g16805	chr4:009456821	0.0	C/9456821-9457000	AT4G16805.1  CDS  go_component mitochondrion|GO:0005739||IEA  product unknown protein  note unknown protein; LOCATED IN: mitochondrion; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G16805.1p  transcript_id AT4G16805.1  protein_id AT4G16805.1p  transcript_id AT4G16805.1  
At4g16807	chr4:009459338	0.0	C/9459338-9459358,9459186-9459225,9458938-9459081,9458646-9458845,9458531-9458567,9458164-9458399,9457317-9457958	AT4G16807.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G33528.1); Has 261 Blast hits to 230 proteins in 49 species: Archae - 0; Bacteria - 3; Metazoa - 53; Fungi - 18; Plants - 28; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT4G16807.1p  transcript_id AT4G16807.1  protein_id AT4G16807.1p  transcript_id AT4G16807.1  
At4g16810	chr4:009462192	0.0	C/9462192-9462253,9461487-9461538,9461200-9461289,9461013-9461095,9460796-9460885,9460522-9460701,9460072-9460417	AT4G16810.1  CDS  gene_syn DL4430C, FCAALL.38  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: VRN2 (REDUCED VERNALIZATION RESPONSE 2); transcription factor (TAIR:AT4G16845.2); Has 141 Blast hits to 141 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 66; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G16810.1p  transcript_id AT4G16810.1  protein_id AT4G16810.1p  transcript_id AT4G16810.1  
At4g16820	chr4:009467563	0.0	W/9467563-9469116	AT4G16820.1  CDS  gene_syn DL4435W, FCAALL.42  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product lipase class 3 family protein  note lipase class 3 family protein; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; EXPRESSED IN: sperm cell, cultured cell; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: DAD1 (DEFECTIVE ANTHER DEHISCENCE 1); phospholipase A1/ triacylglycerol lipase (TAIR:AT2G44810.1); Has 1087 Blast hits to 1080 proteins in 206 species: Archae - 0; Bacteria - 210; Metazoa - 49; Fungi - 233; Plants - 316; Viruses - 3; Other Eukaryotes - 276 (source: NCBI BLink).  protein_id AT4G16820.1p  transcript_id AT4G16820.1  protein_id AT4G16820.1p  transcript_id AT4G16820.1  
At4g16830	chr4:009470621	0.0	W/9470621-9470792,9470961-9471267,9471350-9471415,9471519-9471645,9471746-9471901,9471988-9472038,9472120-9472308	AT4G16830.1  CDS  gene_syn DL4440W, FCAALL.13  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product nuclear RNA-binding protein (RGGA)  note nuclear RNA-binding protein (RGGA); FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hyaluronan/mRNA binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: nuclear RNA-binding protein, putative (TAIR:AT5G47210.1); Has 21311 Blast hits to 10623 proteins in 811 species: Archae - 12; Bacteria - 6397; Metazoa - 7146; Fungi - 1662; Plants - 3005; Viruses - 285; Other Eukaryotes - 2804 (source: NCBI BLink).  protein_id AT4G16830.1p  transcript_id AT4G16830.1  protein_id AT4G16830.1p  transcript_id AT4G16830.1  
At4g16830	chr4:009470652	0.0	W/9470652-9470797,9470965-9471267,9471350-9471415,9471519-9471645,9471746-9471901,9471988-9472038,9472120-9472308	AT4G16830.3  CDS  gene_syn DL4440W, FCAALL.13  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product nuclear RNA-binding protein (RGGA)  note nuclear RNA-binding protein (RGGA); FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hyaluronan/mRNA binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: nuclear RNA-binding protein, putative (TAIR:AT5G47210.1); Has 20327 Blast hits to 9745 proteins in 789 species: Archae - 10; Bacteria - 6113; Metazoa - 6743; Fungi - 1541; Plants - 2894; Viruses - 285; Other Eukaryotes - 2741 (source: NCBI BLink).  protein_id AT4G16830.3p  transcript_id AT4G16830.3  protein_id AT4G16830.3p  transcript_id AT4G16830.3  
At4g16830	chr4:009470979	0.0	W/9470979-9471128,9471209-9471267,9471350-9471415,9471519-9471645,9471746-9471901,9471988-9472038,9472120-9472308	AT4G16830.2  CDS  gene_syn DL4440W, FCAALL.13  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product nuclear RNA-binding protein (RGGA)  note nuclear RNA-binding protein (RGGA); FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hyaluronan/mRNA binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: nuclear RNA-binding protein, putative (TAIR:AT5G47210.1); Has 988 Blast hits to 907 proteins in 194 species: Archae - 2; Bacteria - 41; Metazoa - 471; Fungi - 97; Plants - 112; Viruses - 23; Other Eukaryotes - 242 (source: NCBI BLink).  protein_id AT4G16830.2p  transcript_id AT4G16830.2  protein_id AT4G16830.2p  transcript_id AT4G16830.2  
At4g16835	chr4:009473021	0.0	W/9473021-9474337,9474393-9474803	AT4G16835.1  CDS  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G02750.1); Has 15652 Blast hits to 5402 proteins in 181 species: Archae - 1; Bacteria - 10; Metazoa - 71; Fungi - 78; Plants - 15163; Viruses - 0; Other Eukaryotes - 329 (source: NCBI BLink).  protein_id AT4G16835.1p  transcript_id AT4G16835.1  protein_id AT4G16835.1p  transcript_id AT4G16835.1  
At4g16840	chr4:009474914	0.0	W/9474914-9475160,9475349-9475365	AT4G16840.1  CDS  gene_syn DL4445W, FCAALL.92  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35658.3); Has 23 Blast hits to 23 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G16840.1p  transcript_id AT4G16840.1  protein_id AT4G16840.1p  transcript_id AT4G16840.1  
At4g16845	chr4:009476708	0.0	W/9476708-9476833,9477004-9477059,9477230-9477297,9477395-9477447,9477665-9477718,9477802-9477861,9477944-9477987,9478086-9478216,9478380-9478566,9478684-9478732,9478928-9479011,9479109-9479188,9479307-9479396,9479485-9479725	AT4G16845.1  CDS  gene_syn REDUCED VERNALIZATION RESPONSE 2, VRN2  gene VRN2  function The VERNALIZATION2 (VRN2) gene mediates vernalization and encodes a nuclear-localized zinc finger protein with similarity to Polycomb group (PcG) proteins of plants and animals. In wild-type Arabidopsis, vernalization results in the stable reduction of the levels of the floral repressor FLC. In vrn2 mutants, FLC expression is downregulated normally in response to vernalization, but instead of remaining low, FLC mRNA levels increase when plants are returned to normal temperatures. VRN2 maintains FLC repression after a cold treatment, serving as a mechanism for the cellular memory of vernalization. Required for complete repression of FLC. Required for the methylation of histone H3  go_component nucleus|GO:0005634|11719192|IEP  go_process genetic imprinting|GO:0006349|16527743|IMP  go_process response to cold|GO:0009409|16983073|IEP  go_process vernalization response|GO:0010048|8998499|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product VRN2 (REDUCED VERNALIZATION RESPONSE 2); transcription factor  note REDUCED VERNALIZATION RESPONSE 2 (VRN2); FUNCTIONS IN: transcription factor activity; INVOLVED IN: genetic imprinting, response to cold, vernalization response; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: EMF2 (EMBRYONIC FLOWER 2); DNA binding / transcription factor (TAIR:AT5G51230.3); Has 15764 Blast hits to 3871 proteins in 96 species: Archae - 2; Bacteria - 2; Metazoa - 472; Fungi - 512; Plants - 135; Viruses - 3; Other Eukaryotes - 14638 (source: NCBI BLink).  protein_id AT4G16845.1p  transcript_id AT4G16845.1  protein_id AT4G16845.1p  transcript_id AT4G16845.1  
At4g16845	chr4:009477246	0.0	W/9477246-9477297,9477399-9477469,9477665-9477718,9477802-9477861,9477944-9477987,9478086-9478216,9478380-9478566,9478684-9478732,9478928-9479011,9479109-9479188,9479307-9479396,9479485-9479725	AT4G16845.2  CDS  gene_syn REDUCED VERNALIZATION RESPONSE 2, VRN2  gene VRN2  function The VERNALIZATION2 (VRN2) gene mediates vernalization and encodes a nuclear-localized zinc finger protein with similarity to Polycomb group (PcG) proteins of plants and animals. In wild-type Arabidopsis, vernalization results in the stable reduction of the levels of the floral repressor FLC. In vrn2 mutants, FLC expression is downregulated normally in response to vernalization, but instead of remaining low, FLC mRNA levels increase when plants are returned to normal temperatures. VRN2 maintains FLC repression after a cold treatment, serving as a mechanism for the cellular memory of vernalization. Required for complete repression of FLC. Required for the methylation of histone H3  go_component nucleus|GO:0005634|11719192|IEP  go_process genetic imprinting|GO:0006349|16527743|IMP  go_process response to cold|GO:0009409|16983073|IEP  go_process vernalization response|GO:0010048|8998499|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product VRN2 (REDUCED VERNALIZATION RESPONSE 2); transcription factor  note REDUCED VERNALIZATION RESPONSE 2 (VRN2); FUNCTIONS IN: transcription factor activity; INVOLVED IN: genetic imprinting, response to cold, vernalization response; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: EMF2 (EMBRYONIC FLOWER 2); DNA binding / transcription factor (TAIR:AT5G51230.3); Has 15648 Blast hits to 3857 proteins in 95 species: Archae - 2; Bacteria - 2; Metazoa - 399; Fungi - 510; Plants - 89; Viruses - 3; Other Eukaryotes - 14643 (source: NCBI BLink).  protein_id AT4G16845.2p  transcript_id AT4G16845.2  protein_id AT4G16845.2p  transcript_id AT4G16845.2  
At4g16850	chr4:009480699	0.0	W/9480699-9481640	AT4G16850.1  CDS  gene_syn DL4450W, FCAALL.194  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31130.1); Has 85 Blast hits to 84 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G16850.1p  transcript_id AT4G16850.1  protein_id AT4G16850.1p  transcript_id AT4G16850.1  
At4g16855	chr4:009482370	0.0	W/9482370-9482507	AT4G16855.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G16855.1p  transcript_id AT4G16855.1  protein_id AT4G16855.1p  transcript_id AT4G16855.1  
At4g16870	chr4:009483955	0.0	C/9483955-9488397	AT4G16870.1  mRNA_TE_gene  pseudo  gene_syn DL4465C, FCAALL.49  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)  
At4g16860	chr4:009495231	0.0	C/9495231-9495700,9490995-9492072,9490479-9490811,9489968-9490378,9489372-9489851,9488584-9489255	AT4G16860.1  CDS  gene_syn DL4460C, FCAALL.47, RPP4, recognition of peronospora parasitica 4  gene RPP4  function Confers resistance to Peronospora parasitica. RPP4 is coordinately regulated by transcriptional activation and RNA silencing.  go_component intrinsic to membrane|GO:0031224||IEA  go_process defense response|GO:0006952|11846877|TAS  go_process defense response|GO:0006952||ISS  go_process defense response to fungus, incompatible interaction|GO:0009817|11846877|ISS  go_function LRR domain binding|GO:0030275|11846877|ISS  product RPP4 (recognition of peronospora parasitica 4); LRR domain binding  note recognition of peronospora parasitica 4 (RPP4); FUNCTIONS IN: LRR domain binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat 3 (InterPro:IPR011713), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G16920.1); Has 18092 Blast hits to 10691 proteins in 439 species: Archae - 8; Bacteria - 837; Metazoa - 1657; Fungi - 90; Plants - 14725; Viruses - 36; Other Eukaryotes - 739 (source: NCBI BLink).  protein_id AT4G16860.1p  transcript_id AT4G16860.1  protein_id AT4G16860.1p  transcript_id AT4G16860.1  
At4g16880	chr4:009498920	0.0	C/9498920-9498926,9498748-9498878,9497108-9497242,9496550-9496969	AT4G16880.1  CDS  gene_syn DL4470C, FCAALL.50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product disease resistance protein-related  note disease resistance protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor (TAIR:AT4G16940.1); Has 1946 Blast hits to 1639 proteins in 35 species: Archae - 0; Bacteria - 10; Metazoa - 1; Fungi - 0; Plants - 1931; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G16880.1p  transcript_id AT4G16880.1  protein_id AT4G16880.1p  transcript_id AT4G16880.1  
At4g16890	chr4:009504992	0.0	C/9504992-9505455,9503837-9504914,9503364-9503651,9502787-9503266,9501337-9502573,9500813-9500955,9500506-9500721	AT4G16890.1  CDS  gene_syn BAL, BALL, DL4475C, FCAALL.51, SNC1, SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1  gene SNC1  function Encodes a Toll Interleukin1 receptor-nucleotide binding-Leu- rich repeat-type resistance gene (TIR-NB-LRR-type) involved in the salicylic acid-dependent defense response pathway. Mutant plants constitutively express pathogenesis-related (PR) genes and are pathogen resistant. Resistance signaling in snc1 requires EDS1, MOS3 and PAD4.  go_component intrinsic to membrane|GO:0031224||IEA  go_process defense response|GO:0006952||ISS  go_process response to auxin stimulus|GO:0009733|17919906|IGI  go_process defense response to bacterium, incompatible interaction|GO:0009816||NAS  go_process systemic acquired resistance, salicylic acid mediated signaling pathway|GO:0009862|11605952|IMP  go_function nucleotide binding|GO:0000166|11605952|ISS  product SNC1 (SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1); nucleotide binding  note SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1 (SNC1); FUNCTIONS IN: nucleotide binding; INVOLVED IN: response to auxin stimulus, defense response to bacterium, incompatible interaction, defense response, systemic acquired resistance, salicylic acid mediated signaling pathway; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G16920.1); Has 29772 Blast hits to 15673 proteins in 616 species: Archae - 40; Bacteria - 2082; Metazoa - 3970; Fungi - 189; Plants - 21559; Viruses - 14; Other Eukaryotes - 1918 (source: NCBI BLink).  protein_id AT4G16890.1p  transcript_id AT4G16890.1  protein_id AT4G16890.1p  transcript_id AT4G16890.1  
At4g16892	chr4:009506322	0.0	C/9506322-9508337	AT4G16892.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G16892.1  
At4g16910	chr4:009509676	0.0	C/9509676-9511760	AT4G16910.1  mRNA_TE_gene  pseudo  gene_syn DL4485C, FCAALL.52  note Transposable element gene, gypsy-like retrotransposon family, has a 6.1e-185 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At4g16900	chr4:009516075	0.0	C/9516075-9516541,9514954-9515939,9514398-9514678,9514046-9514280,9513805-9513953,9512993-9513581,9512853-9512928,9512648-9512772,9512329-9512543	AT4G16900.1  CDS  gene_syn DL4480C, FCAALL.310  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product ATP binding / protein binding / transmembrane receptor  note ATP binding / protein binding / transmembrane receptor; FUNCTIONS IN: transmembrane receptor activity, protein binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat 3 (InterPro:IPR011713), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: SNC1 (SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1); nucleotide binding (TAIR:AT4G16890.1); Has 13912 Blast hits to 9682 proteins in 384 species: Archae - 4; Bacteria - 541; Metazoa - 708; Fungi - 45; Plants - 12049; Viruses - 10; Other Eukaryotes - 555 (source: NCBI BLink).  protein_id AT4G16900.1p  transcript_id AT4G16900.1  protein_id AT4G16900.1p  transcript_id AT4G16900.1  
At4g16915	chr4:009516724	0.0	W/9516724-9516818,9517047-9517133,9517412-9517483,9517677-9517706,9517799-9517838,9518025-9518223,9518320-9518381,9518572-9518697	AT4G16915.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT4G16915.1p  transcript_id AT4G16915.1  protein_id AT4G16915.1p  transcript_id AT4G16915.1  
At4g16920	chr4:009525234	0.0	C/9525234-9525691,9524002-9525079,9522240-9522533,9521680-9522090,9521084-9521563,9520022-9520888,9519519-9519629,9519173-9519388	AT4G16920.1  CDS  gene_syn DL4490C, FCAALL.311  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: RPP5 (RECOGNITION OF PERONOSPORA PARASITICA 5); nucleotide binding (TAIR:AT4G16950.2); Has 23847 Blast hits to 12906 proteins in 516 species: Archae - 24; Bacteria - 1385; Metazoa - 2229; Fungi - 116; Plants - 18834; Viruses - 34; Other Eukaryotes - 1225 (source: NCBI BLink).  protein_id AT4G16920.1p  transcript_id AT4G16920.1  protein_id AT4G16920.1p  transcript_id AT4G16920.1  
At4g16930	chr4:009529943	0.0	C/9529943-9530115,9529564-9529855	AT4G16930.1  CDS  gene_syn DL4495C, FCAALL.312  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: RPP5 (RECOGNITION OF PERONOSPORA PARASITICA 5); nucleotide binding (TAIR:AT4G16950.2); Has 620 Blast hits to 607 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 620; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G16930.1p  transcript_id AT4G16930.1  protein_id AT4G16930.1p  transcript_id AT4G16930.1  
At4g16935	chr4:009530699	0.0	W/9530699-9530924	AT4G16935.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 3.3e-16 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At4g16940	chr4:009537167	0.0	C/9537167-9537510,9535926-9537015,9535480-9535800,9534957-9535355,9533963-9534809,9533469-9533701,9533149-9533358	AT4G16940.1  CDS  gene_syn DL4500C, FCAALL.313  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process defense response|GO:0006952||ISS  product ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor  note ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor; FUNCTIONS IN: protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat 3 (InterPro:IPR011713), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G16960.1); Has 16228 Blast hits to 10862 proteins in 426 species: Archae - 14; Bacteria - 680; Metazoa - 1411; Fungi - 63; Plants - 13281; Viruses - 12; Other Eukaryotes - 767 (source: NCBI BLink).  protein_id AT4G16940.1p  transcript_id AT4G16940.1  protein_id AT4G16940.1p  transcript_id AT4G16940.1  
At4g16950	chr4:009543862	0.0	C/9543862-9544340,9542661-9543735,9542182-9542475,9541671-9542081,9541075-9541554,9539512-9540879,9539174-9539381,9539010-9539044	AT4G16950.1  CDS  gene_syn DISEASE RESISTANCE PROTEIN RPP5, DL4505C, FCAALL.315, RECOGNITION OF PERONOSPORA PARASITICA 5, RPP5  gene RPP5  function Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.  go_component intrinsic to membrane|GO:0031224||IEA  go_process defense response|GO:0006952|10559437|TAS  go_process defense response|GO:0006952|9212464|TAS  go_process defense response|GO:0006952||ISS  go_process defense response to fungus, incompatible interaction|GO:0009817|11846877|IMP  go_function nucleotide binding|GO:0000166|10571892|TAS  product RPP5 (RECOGNITION OF PERONOSPORA PARASITICA 5); nucleotide binding  note RECOGNITION OF PERONOSPORA PARASITICA 5 (RPP5); FUNCTIONS IN: nucleotide binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G16920.1); Has 23981 Blast hits to 13110 proteins in 524 species: Archae - 22; Bacteria - 1444; Metazoa - 2320; Fungi - 146; Plants - 18767; Viruses - 32; Other Eukaryotes - 1250 (source: NCBI BLink).  protein_id AT4G16950.1p  transcript_id AT4G16950.1  protein_id AT4G16950.1p  transcript_id AT4G16950.1  
At4g16950	chr4:009543862	0.0	C/9543862-9544340,9542661-9543735,9542182-9542475,9541671-9542081,9541075-9541554,9539758-9540879,9539512-9539649,9539166-9539381	AT4G16950.2  CDS  gene_syn DISEASE RESISTANCE PROTEIN RPP5, DL4505C, FCAALL.315, RECOGNITION OF PERONOSPORA PARASITICA 5, RPP5  gene RPP5  function Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.  go_component intrinsic to membrane|GO:0031224||IEA  go_process defense response|GO:0006952|10559437|TAS  go_process defense response|GO:0006952|9212464|TAS  go_process defense response|GO:0006952||ISS  go_process defense response to fungus, incompatible interaction|GO:0009817|11846877|IMP  go_function nucleotide binding|GO:0000166|10571892|TAS  product RPP5 (RECOGNITION OF PERONOSPORA PARASITICA 5); nucleotide binding  note RECOGNITION OF PERONOSPORA PARASITICA 5 (RPP5); FUNCTIONS IN: nucleotide binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G16920.1); Has 23963 Blast hits to 13110 proteins in 524 species: Archae - 22; Bacteria - 1444; Metazoa - 2318; Fungi - 146; Plants - 18751; Viruses - 32; Other Eukaryotes - 1250 (source: NCBI BLink).  protein_id AT4G16950.2p  transcript_id AT4G16950.2  protein_id AT4G16950.2p  transcript_id AT4G16950.2  
At4g16960	chr4:009550532	0.0	C/9550532-9551007,9549287-9550380,9548835-9549079,9548303-9548695,9547494-9548154,9546807-9546829,9546343-9546576	AT4G16960.1  CDS  gene_syn DL4510C, FCAALL.317  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor (TAIR:AT4G16940.1); Has 14725 Blast hits to 9868 proteins in 361 species: Archae - 4; Bacteria - 473; Metazoa - 898; Fungi - 33; Plants - 12664; Viruses - 10; Other Eukaryotes - 643 (source: NCBI BLink).  protein_id AT4G16960.1p  transcript_id AT4G16960.1  protein_id AT4G16960.1p  transcript_id AT4G16960.1  
At4g16970	chr4:009555370	0.0	C/9555370-9555766,9555201-9555268,9554417-9555112,9554224-9554290,9554068-9554130,9553915-9553978,9553651-9553828,9553471-9553560,9553202-9553229,9552646-9553119,9552499-9552560,9552229-9552338,9552053-9552140,9551516-9551800	AT4G16970.1  CDS  gene_syn DL4515C, FCAALL.319  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note ATP binding / kinase/ protein kinase/ protein serine/threonine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: casein kinase II alpha chain, putative (TAIR:AT2G23070.1); Has 28325 Blast hits to 23063 proteins in 766 species: Archae - 4; Bacteria - 1025; Metazoa - 12500; Fungi - 3604; Plants - 4846; Viruses - 36; Other Eukaryotes - 6310 (source: NCBI BLink).  protein_id AT4G16970.1p  transcript_id AT4G16970.1  protein_id AT4G16970.1p  transcript_id AT4G16970.1  
At4g16980	chr4:009557087	0.0	W/9557087-9557581	AT4G16980.1  CDS  gene_syn DL4520C, FCAALL.321  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product arabinogalactan-protein family  note arabinogalactan-protein family; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 55729 Blast hits to 24766 proteins in 1168 species: Archae - 164; Bacteria - 9443; Metazoa - 21010; Fungi - 5539; Plants - 9700; Viruses - 2314; Other Eukaryotes - 7559 (source: NCBI BLink).  protein_id AT4G16980.1p  transcript_id AT4G16980.1  protein_id AT4G16980.1p  transcript_id AT4G16980.1  
At4g16990	chr4:009560155	0.0	W/9560155-9560612,9561097-9561917,9562015-9562123,9562245-9562348,9562675-9562885,9563015-9563187,9564477-9564596,9564692-9564941,9565081-9565225	AT4G16990.2  CDS  gene_syn DL4525W, FCAALL.324, RESISTANCE TO LEPTOSPHAERIA MACULANS 3, RLM3  gene RLM3  go_component intrinsic to membrane|GO:0031224||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  go_process defense response to fungus, incompatible interaction|GO:0009817|18397376|IMP  go_process jasmonic acid and ethylene-dependent systemic resistance|GO:0009861|18397376|IMP  go_process callose deposition during defense response|GO:0052542|18397376|IMP  product RLM3 (RESISTANCE TO LEPTOSPHAERIA MACULANS 3); ATP binding / transmembrane receptor  note RESISTANCE TO LEPTOSPHAERIA MACULANS 3 (RLM3); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: defense response to fungus, incompatible interaction, jasmonic acid and ethylene-dependent systemic resistance, callose deposition during defense response, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: SNC1 (SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1); nucleotide binding (TAIR:AT4G16890.1); Has 4576 Blast hits to 4377 proteins in 153 species: Archae - 0; Bacteria - 3; Metazoa - 4; Fungi - 0; Plants - 4569; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G16990.2p  transcript_id AT4G16990.2  protein_id AT4G16990.2p  transcript_id AT4G16990.2  
At4g16990	chr4:009560155	0.0	W/9560155-9560612,9561097-9561917,9562015-9562123,9562245-9562348,9562675-9562885,9563018-9563187,9564477-9564616	AT4G16990.1  CDS  gene_syn DL4525W, FCAALL.324, RESISTANCE TO LEPTOSPHAERIA MACULANS 3, RLM3  gene RLM3  go_component intrinsic to membrane|GO:0031224||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  go_process defense response to fungus, incompatible interaction|GO:0009817|18397376|IMP  go_process jasmonic acid and ethylene-dependent systemic resistance|GO:0009861|18397376|IMP  go_process callose deposition during defense response|GO:0052542|18397376|IMP  product RLM3 (RESISTANCE TO LEPTOSPHAERIA MACULANS 3); ATP binding / transmembrane receptor  note RESISTANCE TO LEPTOSPHAERIA MACULANS 3 (RLM3); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: defense response to fungus, incompatible interaction, jasmonic acid and ethylene-dependent systemic resistance, callose deposition during defense response, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: SNC1 (SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1); nucleotide binding (TAIR:AT4G16890.1); Has 4501 Blast hits to 4380 proteins in 153 species: Archae - 0; Bacteria - 3; Metazoa - 4; Fungi - 0; Plants - 4494; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G16990.1p  transcript_id AT4G16990.1  protein_id AT4G16990.1p  transcript_id AT4G16990.1  
At4g16990	chr4:009561113	0.0	W/9561113-9561917,9562015-9562123,9562245-9562348,9562675-9562885,9563015-9563187,9564477-9564596,9564677-9564941,9565081-9565225	AT4G16990.4  CDS  gene_syn DL4525W, FCAALL.324, RESISTANCE TO LEPTOSPHAERIA MACULANS 3, RLM3  gene RLM3  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  go_process defense response to fungus, incompatible interaction|GO:0009817|18397376|IMP  go_process jasmonic acid and ethylene-dependent systemic resistance|GO:0009861|18397376|IMP  go_process callose deposition during defense response|GO:0052542|18397376|IMP  product RLM3 (RESISTANCE TO LEPTOSPHAERIA MACULANS 3); ATP binding  note RESISTANCE TO LEPTOSPHAERIA MACULANS 3 (RLM3); FUNCTIONS IN: ATP binding; INVOLVED IN: defense response to fungus, incompatible interaction, jasmonic acid and ethylene-dependent systemic resistance, callose deposition during defense response, defense response; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G16960.1); Has 4205 Blast hits to 4073 proteins in 145 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 4203; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G16990.4p  transcript_id AT4G16990.4  protein_id AT4G16990.4p  transcript_id AT4G16990.4  
At4g16990	chr4:009561113	0.0	W/9561113-9561917,9562015-9562123,9562245-9562348,9562675-9562885,9563015-9563187,9564477-9564596,9564692-9564941,9565081-9565225	AT4G16990.3  CDS  gene_syn DL4525W, FCAALL.324, RESISTANCE TO LEPTOSPHAERIA MACULANS 3, RLM3  gene RLM3  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  go_process defense response to fungus, incompatible interaction|GO:0009817|18397376|IMP  go_process jasmonic acid and ethylene-dependent systemic resistance|GO:0009861|18397376|IMP  go_process callose deposition during defense response|GO:0052542|18397376|IMP  product RLM3 (RESISTANCE TO LEPTOSPHAERIA MACULANS 3); ATP binding  note RESISTANCE TO LEPTOSPHAERIA MACULANS 3 (RLM3); FUNCTIONS IN: ATP binding; INVOLVED IN: defense response to fungus, incompatible interaction, jasmonic acid and ethylene-dependent systemic resistance, callose deposition during defense response, defense response; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G16960.1); Has 4205 Blast hits to 4073 proteins in 145 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 4203; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G16990.3p  transcript_id AT4G16990.3  protein_id AT4G16990.3p  transcript_id AT4G16990.3  
At4g16990	chr4:009561113	0.0	W/9561113-9561917,9562015-9562123,9562245-9562348,9562675-9562885,9563018-9563187,9564477-9564596,9564692-9564941,9565081-9565225	AT4G16990.5  CDS  gene_syn DL4525W, FCAALL.324, RESISTANCE TO LEPTOSPHAERIA MACULANS 3, RLM3  gene RLM3  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  go_process defense response to fungus, incompatible interaction|GO:0009817|18397376|IMP  go_process jasmonic acid and ethylene-dependent systemic resistance|GO:0009861|18397376|IMP  go_process callose deposition during defense response|GO:0052542|18397376|IMP  product RLM3 (RESISTANCE TO LEPTOSPHAERIA MACULANS 3); ATP binding  note RESISTANCE TO LEPTOSPHAERIA MACULANS 3 (RLM3); FUNCTIONS IN: ATP binding; INVOLVED IN: defense response to fungus, incompatible interaction, jasmonic acid and ethylene-dependent systemic resistance, callose deposition during defense response, defense response; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G16960.1); Has 4203 Blast hits to 4063 proteins in 141 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 4201; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G16990.5p  transcript_id AT4G16990.5  protein_id AT4G16990.5p  transcript_id AT4G16990.5  
At4g17000	chr4:009569769	0.0	C/9569769-9569913,9569502-9569566,9569335-9569396,9568141-9569223,9567973-9568051,9567780-9567893,9567526-9567690,9567400-9567485,9567046-9567271	AT4G17000.1  CDS  gene_syn DL4530C, FCAALL.326  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28770.1); Has 2463 Blast hits to 1956 proteins in 244 species: Archae - 0; Bacteria - 247; Metazoa - 756; Fungi - 177; Plants - 78; Viruses - 7; Other Eukaryotes - 1198 (source: NCBI BLink).  protein_id AT4G17000.1p  transcript_id AT4G17000.1  protein_id AT4G17000.1p  transcript_id AT4G17000.1  
At4g17005	chr4:009574929	0.0	W/9574929-9575295	AT4G17005.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 6.3e-14 P-value blast match to GB:AAC24836 pol polyprotein (Ty1_Copia-element) (Candida albicans)  
At4g17010	chr4:009576442	0.0	W/9576442-9576558,9576933-9577043,9577373-9577627	AT4G17010.1  CDS  gene_syn DL4535W, FCAALL.229  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 8 growth stages; Has 58 Blast hits to 56 proteins in 16 species: Archae - 3; Bacteria - 2; Metazoa - 8; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT4G17010.1p  transcript_id AT4G17010.1  protein_id AT4G17010.1p  transcript_id AT4G17010.1  
At4g17020	chr4:009580970	0.0	C/9580970-9581082,9580732-9580899,9580408-9580476,9580220-9580313,9580000-9580100,9579873-9579918,9579739-9579798,9579591-9579659,9579395-9579478,9579189-9579272,9579007-9579092,9578826-9578916,9578592-9578672,9578379-9578453,9578152-9578289	AT4G17020.1  CDS  gene_syn DL4540C, FCAALL.340  go_component nucleus|GO:0005634||IEA  go_component endomembrane system|GO:0012505||IEA  go_process DNA repair|GO:0006281||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  product transcription factor-related  note transcription factor-related; FUNCTIONS IN: RNA polymerase II transcription factor activity; INVOLVED IN: DNA repair, regulation of transcription, DNA-dependent; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor Tfb2 (InterPro:IPR004598); Has 322 Blast hits to 321 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi - 97; Plants - 31; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT4G17020.1p  transcript_id AT4G17020.1  protein_id AT4G17020.1p  transcript_id AT4G17020.1  
At4g17020	chr4:009580970	0.0	C/9580970-9581082,9580732-9580899,9580408-9580476,9580220-9580313,9580000-9580100,9579873-9579918,9579739-9579798,9579591-9579659,9579395-9579478,9579189-9579272,9579007-9579092,9578826-9578916,9578592-9578672,9578379-9578453,9578156-9578289,9577939-9577972	AT4G17020.2  CDS  gene_syn DL4540C, FCAALL.340  go_component nucleus|GO:0005634||IEA  go_component endomembrane system|GO:0012505||IEA  go_process DNA repair|GO:0006281||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  product transcription factor-related  note transcription factor-related; FUNCTIONS IN: RNA polymerase II transcription factor activity; INVOLVED IN: DNA repair, regulation of transcription, DNA-dependent; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor Tfb2 (InterPro:IPR004598); Has 322 Blast hits to 321 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi - 97; Plants - 31; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT4G17020.2p  transcript_id AT4G17020.2  protein_id AT4G17020.2p  transcript_id AT4G17020.2  
At4g17030	chr4:009583049	0.0	C/9583049-9583181,9582593-9582702,9582150-9582461,9581817-9582014	AT4G17030.1  CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN-LIKE B1, AT-EXPR, ATEXLB1, ATEXPR1, ATHEXP BETA 3.1, DL4545C, EXPR, FCAALL.341  gene ATEXLB1  function EXPANSIN-RELATED. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_process sexual reproduction|GO:0019953||IEA  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828||ISS  product ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1)  note ARABIDOPSIS THALIANA EXPANSIN-LIKE B1 (ATEXLB1); INVOLVED IN: sexual reproduction, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: ATEXLA2 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A2) (TAIR:AT4G38400.1); Has 1256 Blast hits to 1255 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1247; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT4G17030.1p  transcript_id AT4G17030.1  protein_id AT4G17030.1p  transcript_id AT4G17030.1  
At4g17040	chr4:009589031	0.0	C/9589031-9589297,9588148-9588351,9587939-9587994,9587619-9587745,9587374-9587451,9586929-9587042,9586740-9586811	AT4G17040.1  CDS  gene_syn DL4550C, FCAALL.413  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastid stroma|GO:0009532|14593120|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process proteolysis|GO:0006508||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_component chloroplast stroma|GO:0009570|11278690|IDA  product ATP-dependent Clp protease proteolytic subunit, putative  note ATP-dependent Clp protease proteolytic subunit, putative; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plastid stroma, chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: ATP-dependent Clp protease proteolytic subunit, putative (TAIR:AT1G09130.2); Has 8307 Blast hits to 8303 proteins in 1647 species: Archae - 0; Bacteria - 4113; Metazoa - 115; Fungi - 50; Plants - 683; Viruses - 6; Other Eukaryotes - 3340 (source: NCBI BLink).  protein_id AT4G17040.1p  transcript_id AT4G17040.1  protein_id AT4G17040.1p  transcript_id AT4G17040.1  
At4g17050	chr4:009589662	0.0	W/9589662-9589698,9589783-9589911,9590307-9590394,9590498-9590574,9590858-9590897,9590997-9591063,9591202-9591287,9591380-9591461,9591588-9591644,9591728-9591766,9591857-9591927,9592144-9592197,9592344-9592413	AT4G17050.1  CDS  gene_syn DL4555W, FCAALL.343, UGLYAH, UREIDOGLYCINE AMINOHYDROLASE  gene UGLYAH  go_component endomembrane system|GO:0012505||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product UGLYAH (UREIDOGLYCINE AMINOHYDROLASE); transcription factor  note UREIDOGLYCINE AMINOHYDROLASE (UGLYAH); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cupin 2, conserved barrel (InterPro:IPR013096), Cupin, RmlC-type (InterPro:IPR011051), RmlC-like jelly roll fold (InterPro:IPR014710); Has 513 Blast hits to 513 proteins in 229 species: Archae - 4; Bacteria - 414; Metazoa - 0; Fungi - 9; Plants - 21; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT4G17050.1p  transcript_id AT4G17050.1  protein_id AT4G17050.1p  transcript_id AT4G17050.1  
At4g17060	chr4:009593721	0.0	C/9593721-9594653	AT4G17060.1  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleus, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; Has 98 Blast hits to 98 proteins in 20 species: Archae - 0; Bacteria - 2; Metazoa - 32; Fungi - 9; Plants - 49; Viruses - 2; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G17060.1p  transcript_id AT4G17060.1  protein_id AT4G17060.1p  transcript_id AT4G17060.1  
At4g17070	chr4:009597671	0.0	C/9597671-9598066,9597316-9597414,9596822-9596866,9596584-9596721,9595523-9595876	AT4G17070.1  CDS  gene_syn DL4565C, FCAALL.192  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||IEA  go_process response to oxidative stress|GO:0006979|18614705|IMP  product peptidyl-prolyl cis-trans isomerase  note peptidyl-prolyl cis-trans isomerase; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: response to oxidative stress; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); Has 114 Blast hits to 110 proteins in 26 species: Archae - 0; Bacteria - 24; Metazoa - 9; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT4G17070.1p  transcript_id AT4G17070.1  protein_id AT4G17070.1p  transcript_id AT4G17070.1  
At4g17080	chr4:009601570	0.0	W/9601570-9602684,9603251-9603509,9603648-9603815	AT4G17080.1  CDS  gene_syn DL4570W, FCAALL.347  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MORN motif (InterPro:IPR003409); BEST Arabidopsis thaliana protein match is: MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related (TAIR:AT2G35170.1); Has 18005 Blast hits to 5199 proteins in 343 species: Archae - 0; Bacteria - 1726; Metazoa - 3046; Fungi - 93; Plants - 653; Viruses - 0; Other Eukaryotes - 12487 (source: NCBI BLink).  protein_id AT4G17080.1p  transcript_id AT4G17080.1  protein_id AT4G17080.1p  transcript_id AT4G17080.1  
At4g17085	chr4:009604527	0.0	W/9604527-9604594,9604699-9604804	AT4G17085.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 6 Blast hits to 6 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G17085.1p  transcript_id AT4G17085.1  protein_id AT4G17085.1p  transcript_id AT4G17085.1  
At4g17090	chr4:009606718	0.0	C/9606718-9607250,9606409-9606619,9606201-9606311,9605266-9606057	AT4G17090.1  CDS  gene_syn BAM3, BETA-AMYLASE 3, BETA-AMYLASE 8, BMY8, CHLOROPLAST BETA-AMYLASE, CT-BMY, DL4575C, FCAALL.5  gene CT-BMY  function Encodes a beta-amylase targeted to the chloroplast. Transgenic BMY8 RNAi lines fail to accumulate maltose during cold shock suggesting that maltose accumulation coincides with BMY8 expression. Apart from maltose, the sugar content of the RNAi lines were similar to wildtype (glucose and sucrose unaffected).  go_component chloroplast stroma|GO:0009570|10652124|IDA  go_process maltose biosynthetic process|GO:0000024|16297066|IMP  go_process starch catabolic process|GO:0005983|10652124|TAS  go_process starch catabolic process|GO:0005983|16297066|IMP  go_process circadian rhythm|GO:0007623|11118138|IEP  go_process response to cold|GO:0009409|16258011|IEP  go_process response to salt stress|GO:0009651|11351099|IEP  go_process response to trehalose stimulus|GO:0010353|17031512|IEP  go_function beta-amylase activity|GO:0016161|10652124|IDA  go_function beta-amylase activity|GO:0016161||ISS  product CT-BMY (CHLOROPLAST BETA-AMYLASE); beta-amylase  note CHLOROPLAST BETA-AMYLASE (CT-BMY); FUNCTIONS IN: beta-amylase activity; INVOLVED IN: in 6 processes; LOCATED IN: chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14, conserved site (InterPro:IPR018238), Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 14B, plant (InterPro:IPR001371), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BAM1 (BETA-AMYLASE 1); beta-amylase (TAIR:AT3G23920.1); Has 516 Blast hits to 515 proteins in 119 species: Archae - 0; Bacteria - 68; Metazoa - 0; Fungi - 0; Plants - 388; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT4G17090.1p  transcript_id AT4G17090.1  protein_id AT4G17090.1p  transcript_id AT4G17090.1  
At4g17098	chr4:009608632	0.0	W/9608632-9611700	AT4G17098.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT4G17100  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G17098.1  
At4g17100	chr4:009612383	0.0	C/9612383-9612513,9612199-9612270,9611862-9611921,9611575-9611631,9611386-9611457,9610681-9611289,9610502-9610573,9610164-9610400	AT4G17100.1  CDS  gene_syn DL4585C, FCAALL.349  product unknown protein  note unknown protein; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages.  protein_id AT4G17100.1p  transcript_id AT4G17100.1  protein_id AT4G17100.1p  transcript_id AT4G17100.1  
At4g17140	chr4:009636522	0.0	C/9636522-9636618,9635877-9635980,9635466-9635600,9635332-9635382,9635148-9635242,9634952-9635069,9634466-9634567,9634183-9634371,9633937-9634097,9633622-9633792,9633265-9633357,9632859-9633180,9632666-9632770,9632487-9632582,9631998-9632065,9631796-9631916,9631500-9631706,9631198-9631401,9630999-9631099,9630397-9630493,9630283-9630307,9630129-9630181,9629829-9629984,9629681-9629755,9629171-9629596,9628736-9629065,9628508-9628639,9628278-9628391,9628021-9628205,9627765-9627873,9627470-9627613,9627114-9627398,9625967-9626611,9625676-9625867,9625478-9625581,9625061-9625350,9624896-9624980,9624505-9624819,9623753-9624115,9623174-9623663,9622937-9623100,9622608-9622770,9622209-9622478,9621722-9621916,9621288-9621330,9621056-9621180,9619998-9620885,9619814-9619887,9619377-9619725,9619154-9619292,9618979-9619055,9618793-9618897,9618448-9618629,9617842-9618360,9617564-9617741,9617333-9617469,9617084-9617210,9616450-9616671,9616016-9616375,9615607-9615765,9615232-9615516,9614759-9614977,9614405-9614457,9614155-9614263,9613617-9613976	AT4G17140.2  CDS  gene_syn DL4605C, FCAALL.362  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: phosphoinositide binding (TAIR:AT1G48090.2).  protein_id AT4G17140.2p  transcript_id AT4G17140.2  protein_id AT4G17140.2p  transcript_id AT4G17140.2  
At4g17140	chr4:009636522	0.0	C/9636522-9636618,9635877-9635980,9635466-9635600,9635332-9635382,9635148-9635242,9634952-9635069,9634466-9634567,9634183-9634371,9633937-9634097,9633622-9633792,9633265-9633357,9632859-9633180,9632666-9632770,9632487-9632582,9631998-9632065,9631796-9631916,9631500-9631706,9631198-9631401,9630999-9631099,9630397-9630493,9630283-9630307,9630129-9630181,9630043-9630072,9629829-9629984,9629681-9629755,9629171-9629596,9628736-9629065,9628508-9628639,9628278-9628391,9628021-9628205,9627765-9627873,9627470-9627613,9627114-9627398,9625967-9626611,9625676-9625867,9625478-9625581,9625061-9625350,9624896-9624980,9624505-9624819,9623753-9624115,9623174-9623663,9622937-9623100,9622608-9622770,9622209-9622478,9621722-9621916,9621288-9621330,9621056-9621180,9619998-9620885,9619814-9619887,9619377-9619725,9619194-9619292,9618979-9619055,9618793-9618901,9618448-9618629,9617842-9618360,9617564-9617741,9617333-9617469,9617084-9617210,9616450-9616671,9616016-9616375,9615607-9615765,9615232-9615516,9614759-9614977,9614405-9614457,9614155-9614263,9613617-9613976	AT4G17140.1  CDS  gene_syn DL4605C, FCAALL.362  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: phosphoinositide binding (TAIR:AT1G48090.2); Has 1924 Blast hits to 1182 proteins in 161 species: Archae - 0; Bacteria - 16; Metazoa - 911; Fungi - 304; Plants - 271; Viruses - 0; Other Eukaryotes - 422 (source: NCBI BLink).  protein_id AT4G17140.1p  transcript_id AT4G17140.1  protein_id AT4G17140.1p  transcript_id AT4G17140.1  
At4g17150	chr4:009638591	0.0	W/9638591-9638658,9638739-9638820,9638926-9639029,9639129-9639255,9639334-9639428,9639596-9639719,9639985-9640065,9640162-9640260,9640343-9640528,9640786-9640923,9641006-9641062,9641219-9641347,9641430-9641648	AT4G17150.1  CDS  gene_syn DL4610W, FCAALL.363  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14290.1); Has 1493 Blast hits to 1493 proteins in 458 species: Archae - 12; Bacteria - 843; Metazoa - 163; Fungi - 26; Plants - 115; Viruses - 0; Other Eukaryotes - 334 (source: NCBI BLink).  protein_id AT4G17150.1p  transcript_id AT4G17150.1  protein_id AT4G17150.1p  transcript_id AT4G17150.1  
At4g17150	chr4:009638591	0.0	W/9638591-9638658,9638739-9638820,9638926-9639029,9639129-9639255,9639334-9639428,9639596-9639719,9639985-9640065,9640162-9640260,9640343-9640528,9640786-9640983	AT4G17150.2  CDS  gene_syn DL4610W, FCAALL.363  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14290.1); Has 1484 Blast hits to 1484 proteins in 459 species: Archae - 12; Bacteria - 864; Metazoa - 154; Fungi - 24; Plants - 110; Viruses - 0; Other Eukaryotes - 320 (source: NCBI BLink).  protein_id AT4G17150.2p  transcript_id AT4G17150.2  protein_id AT4G17150.2p  transcript_id AT4G17150.2  
At4g17160	chr4:009643496	0.0	C/9643496-9643541,9643220-9643359,9642848-9642930,9642313-9642517,9641980-9642123	AT4G17160.1  CDS  gene_syn ARABIDOPSIS RAB GTPASE HOMOLOG B1A, ATRAB2B, ATRABB1A, DL4615C, FCAALL.364  gene ATRABB1A  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A); GTP binding  note ARABIDOPSIS RAB GTPASE HOMOLOG B1A (ATRABB1A); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C); GTP binding / GTPase (TAIR:AT4G17170.1); Has 21640 Blast hits to 21604 proteins in 604 species: Archae - 13; Bacteria - 102; Metazoa - 11931; Fungi - 2862; Plants - 1809; Viruses - 19; Other Eukaryotes - 4904 (source: NCBI BLink).  protein_id AT4G17160.1p  transcript_id AT4G17160.1  protein_id AT4G17160.1p  transcript_id AT4G17160.1  
At4g17170	chr4:009646175	0.0	C/9646175-9646220,9645839-9645978,9645581-9645663,9645158-9645362,9644908-9645069	AT4G17170.1  CDS  gene_syn ARABIDOPSIS RAB GTPASE HOMOLOG B1B, ARABIDOPSIS RAB GTPASE HOMOLOG B1C, AT-RAB2, ATRAB-B1B, ATRAB2A, ATRABB1C, DL4620C, FCAALL.365, RAB GTPASE HOMOLOG B1B, RAB-B1B, RAB2A, RABB1C  gene RABB1C  function member of RAB gene family  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process ER to Golgi vesicle-mediated transport|GO:0006888|9012859|TAS  go_process cell growth|GO:0016049|9012859|IEP  go_process pollen sperm cell differentiation|GO:0048235|9012859|IEP  go_function GTPase activity|GO:0003924||ISS  go_function GTP binding|GO:0005525||ISS  product RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C); GTP binding / GTPase  note ARABIDOPSIS RAB GTPASE HOMOLOG B1C (RABB1C); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: ER to Golgi vesicle-mediated transport, pollen sperm cell differentiation, cell growth; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: ATGB2 (GTP-BINDING 2); GTP binding (TAIR:AT4G35860.1); Has 21809 Blast hits to 21762 proteins in 605 species: Archae - 13; Bacteria - 94; Metazoa - 12069; Fungi - 2827; Plants - 1853; Viruses - 19; Other Eukaryotes - 4934 (source: NCBI BLink).  protein_id AT4G17170.1p  transcript_id AT4G17170.1  protein_id AT4G17170.1p  transcript_id AT4G17170.1  
At4g17180	chr4:009646541	0.0	W/9646541-9646863,9646941-9648045	AT4G17180.1  CDS  gene_syn DL4625W, FCAALL.368  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT4G31140.1); Has 1749 Blast hits to 1698 proteins in 136 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 52; Plants - 1687; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G17180.1p  transcript_id AT4G17180.1  protein_id AT4G17180.1p  transcript_id AT4G17180.1  
At4g17190	chr4:009650176	0.0	C/9650176-9650346,9650006-9650094,9649860-9649911,9649529-9649624,9649386-9649430,9649206-9649295,9649018-9649089,9648743-9648871	AT4G17190.2  CDS  gene_syn DL4630C, FARNESYL DIPHOSPHATE SYNTHASE 2, FCAALL.91, FPS2  gene FPS2  function Encodes a protein with farnesyl diphosphate synthase activity, which catalyzes the rate limiting step in isoprenoid biosynthesis. Its mRNA is most abundantly expressed in flowers.  go_component cellular_component|GO:0005575||ND  go_process farnesyl diphosphate biosynthetic process|GO:0045337|8631820|IGI  go_process farnesyl diphosphate biosynthetic process|GO:0045337||ISS  go_function dimethylallyltranstransferase activity|GO:0004161|8631820|IGI  go_function geranyltranstransferase activity|GO:0004337|8631820|IGI  product FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2); dimethylallyltranstransferase/ geranyltranstransferase  note FARNESYL DIPHOSPHATE SYNTHASE 2 (FPS2); FUNCTIONS IN: geranyltranstransferase activity, dimethylallyltranstransferase activity; INVOLVED IN: farnesyl diphosphate biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1); dimethylallyltranstransferase/ geranyltranstransferase (TAIR:AT5G47770.1); Has 1696 Blast hits to 1692 proteins in 566 species: Archae - 69; Bacteria - 661; Metazoa - 206; Fungi - 127; Plants - 142; Viruses - 0; Other Eukaryotes - 491 (source: NCBI BLink).  protein_id AT4G17190.2p  transcript_id AT4G17190.2  protein_id AT4G17190.2p  transcript_id AT4G17190.2  
At4g17190	chr4:009650755	0.0	C/9650755-9650865,9650645-9650669,9650450-9650565,9650176-9650379,9650006-9650094,9649860-9649911,9649529-9649624,9649386-9649430,9649206-9649295,9649018-9649089,9648743-9648871	AT4G17190.1  CDS  gene_syn DL4630C, FARNESYL DIPHOSPHATE SYNTHASE 2, FCAALL.91, FPS2  gene FPS2  function Encodes a protein with farnesyl diphosphate synthase activity, which catalyzes the rate limiting step in isoprenoid biosynthesis. Its mRNA is most abundantly expressed in flowers.  go_component cellular_component|GO:0005575||ND  go_process farnesyl diphosphate biosynthetic process|GO:0045337|8631820|IGI  go_process farnesyl diphosphate biosynthetic process|GO:0045337||ISS  go_function dimethylallyltranstransferase activity|GO:0004161|8631820|IGI  go_function geranyltranstransferase activity|GO:0004337|8631820|IGI  product FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2); dimethylallyltranstransferase/ geranyltranstransferase  note FARNESYL DIPHOSPHATE SYNTHASE 2 (FPS2); FUNCTIONS IN: geranyltranstransferase activity, dimethylallyltranstransferase activity; INVOLVED IN: farnesyl diphosphate biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1); dimethylallyltranstransferase/ geranyltranstransferase (TAIR:AT5G47770.1); Has 3926 Blast hits to 3922 proteins in 1095 species: Archae - 127; Bacteria - 1959; Metazoa - 211; Fungi - 145; Plants - 151; Viruses - 0; Other Eukaryotes - 1333 (source: NCBI BLink).  protein_id AT4G17190.1p  transcript_id AT4G17190.1  protein_id AT4G17190.1p  transcript_id AT4G17190.1  
At4g17200	chr4:009651108	0.0	W/9651108-9652253	AT4G17200.1  CDS  gene_syn DL4635W, FCAALL.372  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G13680.1); Has 614 Blast hits to 588 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 612; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G17200.1p  transcript_id AT4G17200.1  protein_id AT4G17200.1p  transcript_id AT4G17200.1  
At4g17210	chr4:009654069	0.0	C/9654069-9654257,9652585-9653979	AT4G17210.1  CDS  gene_syn DL4640C, FCAALL.382  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product myosin heavy chain-related  note myosin heavy chain-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12150.1); Has 83238 Blast hits to 44627 proteins in 1861 species: Archae - 1126; Bacteria - 8963; Metazoa - 42681; Fungi - 6426; Plants - 3093; Viruses - 393; Other Eukaryotes - 20556 (source: NCBI BLink).  protein_id AT4G17210.1p  transcript_id AT4G17210.1  protein_id AT4G17210.1p  transcript_id AT4G17210.1  
At4g17215	chr4:009655884	0.0	W/9655884-9656058,9656148-9656425	AT4G17215.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47635.1); Has 24 Blast hits to 24 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G17215.1p  transcript_id AT4G17215.1  protein_id AT4G17215.1p  transcript_id AT4G17215.1  
At4g17220	chr4:009659345	0.0	C/9659345-9659405,9659163-9659248,9658941-9659006,9658671-9658841,9658260-9658586,9658031-9658177,9657867-9657938,9657367-9657798,9657140-9657291,9657008-9657035	AT4G17220.1  CDS  gene_syn ATMAP70-5, DL4645C, FCAALL.385, microtubule-associated proteins 70-5  gene ATMAP70-5  function Encodes a microtubule associated protein (MAP70-5). Expressed in all tissues.  go_component microtubule|GO:0005874|15860013|ISS  go_process cytoskeleton organization|GO:0007010|15860013|TAS  go_function microtubule binding|GO:0008017|15860013|ISS  product ATMAP70-5 (microtubule-associated proteins 70-5); microtubule binding  note microtubule-associated proteins 70-5 (ATMAP70-5); FUNCTIONS IN: microtubule binding; INVOLVED IN: cytoskeleton organization; LOCATED IN: microtubule; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Myosin II heavy chain-like (InterPro:IPR009768); BEST Arabidopsis thaliana protein match is: ATMAP70-2 (microtubule-associated proteins 70-2); microtubule binding (TAIR:AT1G24764.1); Has 45446 Blast hits to 25208 proteins in 1319 species: Archae - 555; Bacteria - 3952; Metazoa - 25217; Fungi - 3147; Plants - 1752; Viruses - 114; Other Eukaryotes - 10709 (source: NCBI BLink).  protein_id AT4G17220.1p  transcript_id AT4G17220.1  protein_id AT4G17220.1p  transcript_id AT4G17220.1  
At4g17230	chr4:009661218	0.0	C/9661218-9662807	AT4G17230.1  CDS  gene_syn DL4650C, FCAALL.225, SCL13, Scarecrow-like 13  gene SCL13  function Encodes a scarecrow-like protein (SCL13). Member of GRAS gene family.  go_process response to chitin|GO:0010200|17722694|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product SCL13 (Scarecrow-like 13); transcription factor  note Scarecrow-like 13 (SCL13); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to chitin, regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: SCL5; transcription factor (TAIR:AT1G50600.1); Has 1331 Blast hits to 1306 proteins in 187 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 1327; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G17230.1p  transcript_id AT4G17230.1  protein_id AT4G17230.1p  transcript_id AT4G17230.1  
At4g17240	chr4:009667798	0.0	C/9667798-9668292,9667475-9667678,9667255-9667323,9667074-9667157,9666799-9666978	AT4G17240.1  CDS  gene_syn DL4655C, FCAALL.387  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; Has 43 Blast hits to 43 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 2; Plants - 21; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT4G17240.1p  transcript_id AT4G17240.1  protein_id AT4G17240.1p  transcript_id AT4G17240.1  
At4g17245	chr4:009669383	0.0	W/9669383-9669883	AT4G17245.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G47610.1); Has 4937 Blast hits to 4920 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 1569; Fungi - 378; Plants - 2323; Viruses - 12; Other Eukaryotes - 655 (source: NCBI BLink).  protein_id AT4G17245.1p  transcript_id AT4G17245.1  protein_id AT4G17245.1p  transcript_id AT4G17245.1  
At4g17250	chr4:009671104	0.0	W/9671104-9673329	AT4G17250.1  CDS  gene_syn DL4660W, FCAALL.204  go_component cellular_component|GO:0005575||ND  go_process heat acclimation|GO:0010286|16807682|IEP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: heat acclimation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47580.1); Has 13 Blast hits to 13 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G17250.1p  transcript_id AT4G17250.1  protein_id AT4G17250.1p  transcript_id AT4G17250.1  
At4g17260	chr4:009674057	0.0	W/9674057-9674674,9674866-9675309	AT4G17260.1  CDS  gene_syn DL4665W, FCAALL.172  go_component plasma membrane|GO:0005886|17644812|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function catalytic activity|GO:0003824||IEA  go_function L-lactate dehydrogenase activity|GO:0004459||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_process response to abscisic acid stimulus|GO:0009737|16258012|IEP  go_function lactate dehydrogenase activity|GO:0004457||ISS  product L-lactate dehydrogenase, putative  note L-lactate dehydrogenase, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: response to salt stress, response to abscisic acid stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: L-lactate dehydrogenase (InterPro:IPR011304), NAD(P)-binding (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Lactate/malate dehydrogenase (InterPro:IPR001236), L-lactate dehydrogenase, active site (InterPro:IPR018177), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: PMDH2 (peroxisomal NAD-malate dehydrogenase 2); malate dehydrogenase (TAIR:AT5G09660.2); Has 9812 Blast hits to 9805 proteins in 2184 species: Archae - 185; Bacteria - 5417; Metazoa - 1010; Fungi - 354; Plants - 275; Viruses - 0; Other Eukaryotes - 2571 (source: NCBI BLink).  protein_id AT4G17260.1p  transcript_id AT4G17260.1  protein_id AT4G17260.1p  transcript_id AT4G17260.1  
At4g17270	chr4:009676406	0.0	W/9676406-9676534,9676638-9676799,9676890-9677008,9677133-9677207,9677326-9677419,9677525-9677584,9677683-9677751,9677854-9677952,9678062-9678106,9678283-9678385,9678492-9678568	AT4G17270.1  CDS  gene_syn DL4670W, FCAALL.22  go_component plasma membrane|GO:0005886|17317660|IDA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product Mo25 family protein  note Mo25 family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mo25-like (InterPro:IPR013878), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT5G47540.1); Has 393 Blast hits to 393 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 181; Fungi - 88; Plants - 80; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT4G17270.1p  transcript_id AT4G17270.1  protein_id AT4G17270.1p  transcript_id AT4G17270.1  
At4g17280	chr4:009679627	0.0	C/9679627-9680277,9679276-9679530,9678887-9679189	AT4G17280.1  CDS  gene_syn DL4675C, FCAALL.393  go_component membrane|GO:0016020|10080694|ISS  go_process multicellular organismal development|GO:0007275||ISS  product unknown protein  note INVOLVED IN: multicellular organismal development; LOCATED IN: membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP037471 (InterPro:IPR017214), Protein of unknown function DUF568, DOMON-like (InterPro:IPR007613), DOMON related (InterPro:IPR005018), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT5G47530.1); Has 203 Blast hits to 203 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 203; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G17280.1p  transcript_id AT4G17280.1  protein_id AT4G17280.1p  transcript_id AT4G17280.1  
At4g17300	chr4:009681558	0.0	W/9681558-9681950,9682043-9682111,9682228-9682338,9682443-9682547,9682800-9682937,9683051-9683131,9683223-9683300,9683382-9683450,9683543-9683617,9683710-9683793,9683889-9683975,9684241-9684411,9684495-9684621,9684718-9684833	AT4G17300.1  CDS  gene_syn ATNS1, DL4685W, FCAALL.396, NS1, OVA8, ovule abortion 8  gene NS1  function Asparaginyl-tRNA synthetase protein involved in amino acid activation/protein synthesis.  go_component chloroplast|GO:0009507|18431481|IDA  go_component mitochondrion|GO:0005739|10824085|IDA  go_component mitochondrion|GO:0005739|16251277|IDA  go_component mitochondrion|GO:0005739|9655910|ISS  go_component chloroplast|GO:0009507|10824085|IDA  go_component chloroplast|GO:0009507|16251277|IDA  go_process asparaginyl-tRNA aminoacylation|GO:0006421|9655910|ISS  go_process ovule development|GO:0048481|16297076|IMP  go_function asparagine-tRNA ligase activity|GO:0004816|9655910|ISS  product NS1; asparagine-tRNA ligase  note NS1; FUNCTIONS IN: asparagine-tRNA ligase activity; INVOLVED IN: asparaginyl-tRNA aminoacylation, ovule development; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Asparaginyl-tRNA synthetase, class IIb (InterPro:IPR004522), Aspartyl-tRNA synthetase, class IIb (InterPro:IPR002312), Aminoacyl-tRNA synthetase, class II, conserved region (InterPro:IPR006195), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D, K and N) (InterPro:IPR004364), Aminoacyl-tRNA synthetase, class II (D, K and N)-like (InterPro:IPR018150); BEST Arabidopsis thaliana protein match is: SYNC3; ATP binding / aminoacyl-tRNA ligase/ asparagine-tRNA ligase/ aspartate-tRNA ligase/ nucleic acid binding / nucleotide binding (TAIR:AT1G70980.1); Has 11999 Blast hits to 10753 proteins in 1637 species: Archae - 297; Bacteria - 7674; Metazoa - 433; Fungi - 443; Plants - 167; Viruses - 0; Other Eukaryotes - 2985 (source: NCBI BLink).  protein_id AT4G17300.1p  transcript_id AT4G17300.1  protein_id AT4G17300.1p  transcript_id AT4G17300.1  
At4g17310	chr4:009686700	0.0	C/9686700-9686848,9686466-9686616	AT4G17310.1  CDS  gene_syn DL4690C, FCAALL.398  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47455.7); Has 115 Blast hits to 115 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G17310.1p  transcript_id AT4G17310.1  protein_id AT4G17310.1p  transcript_id AT4G17310.1  
At4g17310	chr4:009686700	0.0	C/9686700-9686848,9686498-9686616,9685429-9685454	AT4G17310.2  CDS  gene_syn DL4690C, FCAALL.398  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47455.3); Has 113 Blast hits to 113 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G17310.2p  transcript_id AT4G17310.2  protein_id AT4G17310.2p  transcript_id AT4G17310.2  
At4g17330	chr4:009695579	0.0	C/9695579-9697172,9694976-9695383,9694661-9694822,9694005-9694342,9693501-9693907,9693348-9693400,9693174-9693275,9691418-9693093,9691226-9691334,9690805-9690985,9690577-9690644,9690348-9690463,9689456-9690265,9689263-9689352	AT4G17330.1  CDS  gene_syn ATG2484-1, DL4700C, FCAALL.411  gene ATG2484-1  function gene of unknown function expressed in seedlings, flower buds and stems  go_function RNA binding|GO:0003723||IEA  product ATG2484-1; RNA binding  note ATG2484-1; FUNCTIONS IN: RNA binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT5G55600.2); Has 1966 Blast hits to 1011 proteins in 211 species: Archae - 4; Bacteria - 298; Metazoa - 380; Fungi - 137; Plants - 140; Viruses - 21; Other Eukaryotes - 986 (source: NCBI BLink).  protein_id AT4G17330.1p  transcript_id AT4G17330.1  protein_id AT4G17330.1p  transcript_id AT4G17330.1  
At4g17340	chr4:009699318	0.0	W/9699318-9699695,9699876-9700250	AT4G17340.1  CDS  gene_syn DELTA-TIP2, DL4705W, FCAALL.412, TIP2;2, TONOPLAST INTRINSIC PROTEIN 2;2  gene TIP2;2  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_process response to salt stress|GO:0009651|16183846|IEP  go_function water channel activity|GO:0015250||ISS  product TIP2;2 (TONOPLAST INTRINSIC PROTEIN 2;2); water channel  note TONOPLAST INTRINSIC PROTEIN 2;2 (TIP2;2); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, response to salt stress; LOCATED IN: plasma membrane, chloroplast, vacuole, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: AtTIP2;3; ammonia transporter/ methylammonium transmembrane transporter/ water channel (TAIR:AT5G47450.1); Has 6879 Blast hits to 6845 proteins in 1255 species: Archae - 57; Bacteria - 2652; Metazoa - 1285; Fungi - 264; Plants - 1472; Viruses - 2; Other Eukaryotes - 1147 (source: NCBI BLink).  protein_id AT4G17340.1p  transcript_id AT4G17340.1  protein_id AT4G17340.1p  transcript_id AT4G17340.1  
At4g17350	chr4:009701582	0.0	W/9701582-9701881,9702088-9702481,9702564-9702740,9702841-9702890,9702985-9703042,9703120-9703358	AT4G17350.1  CDS  gene_syn DL4710W, FCAALL.415  go_component cellular_component|GO:0005575||ND  go_process signal transduction|GO:0007165|15358268|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product phosphoinositide binding  note phosphoinositide binding; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin-like, plant (InterPro:IPR013666), Protein of unknown function DUF828, plant (InterPro:IPR008546), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: phosphoinositide binding (TAIR:AT5G47440.1); Has 122 Blast hits to 113 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 116; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G17350.1p  transcript_id AT4G17350.1  protein_id AT4G17350.1p  transcript_id AT4G17350.1  
At4g17360	chr4:009705313	0.0	C/9705313-9705468,9705108-9705220,9704795-9704945,9704640-9704713,9704401-9704560,9704083-9704181,9703924-9704010,9703698-9703844	AT4G17360.1  CDS  gene_syn DL4715C, FCAALL.417  function encodes one of the two putative formyltetrahydrofolate deformylase. Located in the mitochondrion. Involved in photorespiratory tetrahydrofolate cycle.  go_function methyltransferase activity|GO:0008168||IEA  go_function formyltetrahydrofolate deformylase activity|GO:0008864||IEA  go_function hydroxymethyl-, formyl- and related transferase activity|GO:0016742||IEA  go_component mitochondrion|GO:0005739|18628352|IDA  go_process biosynthetic process|GO:0009058||ISS  go_process purine ribonucleotide biosynthetic process|GO:0009152||ISS  go_process photorespiration|GO:0009853|18628352|IMP  go_process tetrahydrofolate metabolic process|GO:0046653|18628352|IMP  go_function formyltetrahydrofolate deformylase activity|GO:0008864||ISS  go_function hydroxymethyl-, formyl- and related transferase activity|GO:0016742||ISS  product formyltetrahydrofolate deformylase/ hydroxymethyl-, formyl- and related transferase/ methyltransferase  note formyltetrahydrofolate deformylase/ hydroxymethyl-, formyl- and related transferase/ methyltransferase; FUNCTIONS IN: methyltransferase activity, hydroxymethyl-, formyl- and related transferase activity, formyltetrahydrofolate deformylase activity; INVOLVED IN: tetrahydrofolate metabolic process, purine ribonucleotide biosynthetic process, biosynthetic process, photorespiration; LOCATED IN: mitochondrion; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Phosphoribosylglycinamide formyltransferase, active site (InterPro:IPR001555), Formyltetrahydrofolate deformylase (InterPro:IPR004810), Formyl transferase, N-terminal (InterPro:IPR002376); BEST Arabidopsis thaliana protein match is: formyltetrahydrofolate deformylase, putative (TAIR:AT5G47435.2); Has 9885 Blast hits to 9885 proteins in 1459 species: Archae - 85; Bacteria - 5686; Metazoa - 161; Fungi - 64; Plants - 92; Viruses - 2; Other Eukaryotes - 3795 (source: NCBI BLink).  protein_id AT4G17360.1p  transcript_id AT4G17360.1  protein_id AT4G17360.1p  transcript_id AT4G17360.1  
At4g17370	chr4:009706188	0.0	W/9706188-9706379,9706577-9706747,9706815-9706979,9707060-9707224,9707298-9707432,9707777-9707874,9707962-9708142	AT4G17370.1  CDS  gene_syn DL4720W, FCAALL.420  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function oxidoreductase activity|GO:0016491||ISS  product oxidoreductase family protein  note oxidoreductase family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase, N-terminal (InterPro:IPR000683), Oxidoreductase, C-terminal (InterPro:IPR004104), NAD(P)-binding (InterPro:IPR016040); Has 8377 Blast hits to 8377 proteins in 1004 species: Archae - 124; Bacteria - 4621; Metazoa - 165; Fungi - 228; Plants - 25; Viruses - 0; Other Eukaryotes - 3214 (source: NCBI BLink).  protein_id AT4G17370.1p  transcript_id AT4G17370.1  protein_id AT4G17370.1p  transcript_id AT4G17370.1  
At4g17380	chr4:009708742	0.0	W/9708742-9708807,9708985-9709188,9709310-9709345,9709439-9709551,9709646-9709691,9709891-9709937,9710047-9710154,9710342-9710417,9710586-9710658,9710786-9710931,9711041-9711126,9711234-9711373,9711460-9711599,9711689-9711739,9711963-9712026,9712132-9712275,9712436-9712503,9712714-9712772,9712870-9713026,9713206-9713258,9713334-9713432,9713521-9713635,9713710-9713832,9713904-9714068	AT4G17380.1  CDS  gene_syn DL4725W, FCAALL.423, MSH4, MUTS HOMOLOG 4, MUTS-LIKE PROTEIN 4  gene MSH4  function Encodes the Arabidopsis homolog of MSH4, a meiosis-specific member of the MutS-homolog family of genes. It is expressed only in floral tissues and only during early meiotic prophase I, preceding the synapsis of homologous chromosomes. It is involved in the early steps of recombination.  go_function ATP binding|GO:0005524||IEA  go_function mismatched DNA binding|GO:0030983||IEA  go_component condensed nuclear chromosome|GO:0000794|15489296|IDA  go_process mismatch repair|GO:0006298||ISS  go_process meiotic prophase I|GO:0007128|15489296|IMP  go_process synapsis|GO:0007129|15489296|IMP  go_function damaged DNA binding|GO:0003684||ISS  go_function ATP binding|GO:0005524||ISS  product MSH4 (MUTS HOMOLOG 4); ATP binding / damaged DNA binding / mismatched DNA binding  note MUTS HOMOLOG 4 (MSH4); FUNCTIONS IN: damaged DNA binding, mismatched DNA binding, ATP binding; INVOLVED IN: mismatch repair, synapsis, meiotic prophase I; LOCATED IN: condensed nuclear chromosome; EXPRESSED IN: flower, sporocyte; EXPRESSED DURING: petal differentiation and expansion stage, IL.00 inflorescence just visible; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, clamp (InterPro:IPR007861), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS, core (InterPro:IPR007696); BEST Arabidopsis thaliana protein match is: MSH2 (MUTS HOMOLOG 2); ATP binding / damaged DNA binding / mismatched DNA binding / protein binding (TAIR:AT3G18524.1); Has 8064 Blast hits to 7968 proteins in 1512 species: Archae - 85; Bacteria - 4750; Metazoa - 543; Fungi - 542; Plants - 230; Viruses - 3; Other Eukaryotes - 1911 (source: NCBI BLink).  protein_id AT4G17380.1p  transcript_id AT4G17380.1  protein_id AT4G17380.1p  transcript_id AT4G17380.1  
At4g17390	chr4:009715542	0.0	C/9715542-9715545,9715276-9715442,9714757-9714954,9714407-9714652	AT4G17390.1  CDS  gene_syn DL4730C, FCAALL.32  go_component nucleolus|GO:0005730|15496452|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L15 (RPL15B)  note 60S ribosomal protein L15 (RPL15B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, ribosome, nucleolus, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L15e (InterPro:IPR000439), Ribosomal protein L23/L15e, core (InterPro:IPR012678); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L15 (RPL15A) (TAIR:AT4G16720.1); Has 971 Blast hits to 970 proteins in 319 species: Archae - 217; Bacteria - 0; Metazoa - 330; Fungi - 103; Plants - 125; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink).  protein_id AT4G17390.1p  transcript_id AT4G17390.1  protein_id AT4G17390.1p  transcript_id AT4G17390.1  
At4g17410	chr4:009716360	0.0	W/9716360-9716525,9716985-9717081,9717231-9717303,9717383-9717540,9717636-9717712,9717872-9717928,9718041-9718197,9718294-9718445,9718534-9718698,9718775-9719077,9719228-9719266,9719375-9719645,9719745-9719867,9719957-9720038,9721082-9721642	AT4G17410.1  CDS  gene_syn DL4740W, FCAALL.426  go_component nucleus|GO:0005634||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: sperm cell, cultured cell; CONTAINS InterPro DOMAIN/s: DWNN domain (InterPro:IPR014891), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT5G47430.1); Has 8731 Blast hits to 6294 proteins in 276 species: Archae - 2; Bacteria - 71; Metazoa - 5540; Fungi - 1215; Plants - 632; Viruses - 56; Other Eukaryotes - 1215 (source: NCBI BLink).  protein_id AT4G17410.1p  transcript_id AT4G17410.1  protein_id AT4G17410.1p  transcript_id AT4G17410.1  
At4g17420	chr4:009724396	0.0	C/9724396-9724443,9724083-9724142,9723955-9723994,9723687-9723865,9723524-9723562,9723345-9723440,9723139-9723169,9722928-9723055,9722713-9722829,9722521-9722536,9722378-9722427	AT4G17420.2  CDS  gene_syn DL4745C, FCAALL.389  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF124 (InterPro:IPR002838), Tryptophan RNA-binding attenuator protein-like (InterPro:IPR016031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47420.1).  protein_id AT4G17420.2p  transcript_id AT4G17420.2  protein_id AT4G17420.2p  transcript_id AT4G17420.2  
At4g17420	chr4:009724396	0.0	C/9724396-9724443,9724083-9724142,9723955-9723994,9723687-9723865,9723524-9723562,9723345-9723440,9723139-9723169,9722928-9723055,9722738-9722829,9722616-9722658,9722521-9722536,9722378-9722427	AT4G17420.3  CDS  gene_syn DL4745C, FCAALL.389  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF124 (InterPro:IPR002838), Tryptophan RNA-binding attenuator protein-like (InterPro:IPR016031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47420.1).  protein_id AT4G17420.3p  transcript_id AT4G17420.3  protein_id AT4G17420.3p  transcript_id AT4G17420.3  
At4g17420	chr4:009724396	0.0	C/9724396-9724443,9724083-9724142,9723955-9723994,9723687-9723865,9723524-9723562,9723345-9723440,9723139-9723199,9722928-9723055,9722738-9722829,9722544-9722658	AT4G17420.1  CDS  gene_syn DL4745C, FCAALL.389  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF124 (InterPro:IPR002838), Tryptophan RNA-binding attenuator protein-like (InterPro:IPR016031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47420.1); Has 588 Blast hits to 588 proteins in 254 species: Archae - 60; Bacteria - 418; Metazoa - 0; Fungi - 6; Plants - 37; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT4G17420.1p  transcript_id AT4G17420.1  protein_id AT4G17420.1p  transcript_id AT4G17420.1  
At4g17430	chr4:009726335	0.0	C/9726335-9726801,9725201-9726257	AT4G17430.1  CDS  gene_syn DL4750C, FCAALL.1  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 20 Blast hits to 20 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G17430.1p  transcript_id AT4G17430.1  protein_id AT4G17430.1p  transcript_id AT4G17430.1  
At4g17440	chr4:009727848	0.0	W/9727848-9728420,9728528-9728599,9728821-9728823	AT4G17440.1  CDS  gene_syn DL4755W, FCAALL.6  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60410.3); Has 127 Blast hits to 127 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G17440.1p  transcript_id AT4G17440.1  protein_id AT4G17440.1p  transcript_id AT4G17440.1  
At4g17440	chr4:009727848	0.0	W/9727848-9728420,9728528-9728599,9728821-9728823	AT4G17440.2  CDS  gene_syn DL4755W, FCAALL.6  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60410.3); Has 127 Blast hits to 127 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G17440.2p  transcript_id AT4G17440.2  protein_id AT4G17440.2p  transcript_id AT4G17440.2  
At4g17450	chr4:009732817	0.0	C/9732817-9737316	AT4G17450.1  mRNA_TE_gene  pseudo  gene_syn DL4760C, FCAALL.8  note Transposable element gene, copia-like retrotransposon family, has a 1.4e-306 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At4g17453	chr4:009738058	0.0	C/9738058-9738273	AT4G17453.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G17453.1p  transcript_id AT4G17453.1  protein_id AT4G17453.1p  transcript_id AT4G17453.1  
At4g17460	chr4:009739862	0.0	W/9739862-9740009,9740097-9740425,9740511-9740590,9740692-9740983	AT4G17460.1  CDS  gene_syn DL4765W, FCAALL.65, HAT1, HOMEOBOX PROTEIN  gene HAT1  function Encodes homeobox protein HAT1.  go_component nucleus|GO:0005634||IEA  go_process transcription|GO:0006350||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product HAT1; DNA binding / transcription factor  note HAT1; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, transcription, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HD-ZIP protein, N-terminal (InterPro:IPR006712), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Homeodomain-like (InterPro:IPR009057), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: HAT2; DNA binding / transcription factor/ transcription repressor (TAIR:AT5G47370.1); Has 6035 Blast hits to 6015 proteins in 445 species: Archae - 0; Bacteria - 0; Metazoa - 4392; Fungi - 188; Plants - 1355; Viruses - 4; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT4G17460.1p  transcript_id AT4G17460.1  protein_id AT4G17460.1p  transcript_id AT4G17460.1  
At4g17470	chr4:009744369	0.0	C/9744369-9744468,9744196-9744280,9743858-9744101,9743712-9743771,9743591-9743629,9743377-9743499,9743169-9743267,9742922-9743098	AT4G17470.1  CDS  gene_syn DL4770C, FCAALL.11  go_component endomembrane system|GO:0012505||IEA  go_process protein modification process|GO:0006464||IEA  go_function palmitoyl-(protein) hydrolase activity|GO:0008474||IEA  go_function palmitoyl-(protein) hydrolase activity|GO:0008474||ISS  product palmitoyl protein thioesterase family protein  note palmitoyl protein thioesterase family protein; FUNCTIONS IN: palmitoyl-(protein) hydrolase activity; INVOLVED IN: protein modification process; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Palmitoyl protein thioesterase (InterPro:IPR002472); BEST Arabidopsis thaliana protein match is: palmitoyl protein thioesterase family protein (TAIR:AT4G17480.1); Has 471 Blast hits to 467 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 285; Fungi - 63; Plants - 80; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT4G17470.1p  transcript_id AT4G17470.1  protein_id AT4G17470.1p  transcript_id AT4G17470.1  
At4g17480	chr4:009746751	0.0	C/9746751-9746847,9746592-9746676,9746257-9746497,9746117-9746167,9745980-9746018,9745759-9745881,9745581-9745673,9745313-9745498	AT4G17480.1  CDS  gene_syn DL4775C, FCAALL.380  go_component endomembrane system|GO:0012505||IEA  go_process protein modification process|GO:0006464||IEA  go_function palmitoyl-(protein) hydrolase activity|GO:0008474||IEA  go_function palmitoyl-(protein) hydrolase activity|GO:0008474||ISS  product palmitoyl protein thioesterase family protein  note palmitoyl protein thioesterase family protein; FUNCTIONS IN: palmitoyl-(protein) hydrolase activity; INVOLVED IN: protein modification process; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Palmitoyl protein thioesterase (InterPro:IPR002472); BEST Arabidopsis thaliana protein match is: palmitoyl protein thioesterase family protein (TAIR:AT4G17470.1); Has 470 Blast hits to 466 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 285; Fungi - 63; Plants - 80; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT4G17480.1p  transcript_id AT4G17480.1  protein_id AT4G17480.1p  transcript_id AT4G17480.1  
At4g17483	chr4:009748787	0.0	C/9748787-9748892,9748598-9748679,9748263-9748503,9748101-9748166,9747983-9748021,9747784-9747906,9747600-9747692,9747375-9747527	AT4G17483.1  CDS  gene_syn FCAALL.16  go_component endomembrane system|GO:0012505||IEA  go_process protein modification process|GO:0006464||IEA  go_function palmitoyl-(protein) hydrolase activity|GO:0008474||IEA  go_function palmitoyl-(protein) hydrolase activity|GO:0008474||ISS  product palmitoyl protein thioesterase family protein  note palmitoyl protein thioesterase family protein; FUNCTIONS IN: palmitoyl-(protein) hydrolase activity; INVOLVED IN: protein modification process; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Palmitoyl protein thioesterase (InterPro:IPR002472); BEST Arabidopsis thaliana protein match is: palmitoyl protein thioesterase family protein (TAIR:AT4G17480.1); Has 467 Blast hits to 463 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 281; Fungi - 63; Plants - 80; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT4G17483.1p  transcript_id AT4G17483.1  protein_id AT4G17483.1p  transcript_id AT4G17483.1  
At4g17486	chr4:009751036	0.0	C/9751036-9751201,9750395-9750682,9750228-9750308,9749992-9750131	AT4G17486.1  CDS  gene_syn FCAALL.234  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47310.1); Has 571 Blast hits to 571 proteins in 129 species: Archae - 0; Bacteria - 0; Metazoa - 195; Fungi - 55; Plants - 185; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).  protein_id AT4G17486.1p  transcript_id AT4G17486.1  protein_id AT4G17486.1p  transcript_id AT4G17486.1  
At4g17486	chr4:009751036	0.0	C/9751036-9751201,9750399-9750682,9750228-9750308,9750063-9750131	AT4G17486.2  CDS  gene_syn FCAALL.234  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47310.1).  protein_id AT4G17486.2p  transcript_id AT4G17486.2  protein_id AT4G17486.2p  transcript_id AT4G17486.2  
At4g17490	chr4:009752973	0.0	C/9752973-9753821	AT4G17490.1  CDS  gene_syn ATERF6, DL4780C, ERF-6-6, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6, FCAALL.120  gene ATERF6  function Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-6). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS  go_process response to chitin|GO:0010200|17722694|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9687012|TAS  go_function transcription factor activity|GO:0003700||ISS  product ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6); DNA binding / transcription factor  note ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6 (ATERF6); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: ethylene mediated signaling pathway, response to chitin, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ERF5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5); DNA binding / transcription activator/ transcription factor (TAIR:AT5G47230.1); Has 3624 Blast hits to 3554 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3614; Viruses - 2; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT4G17490.1p  transcript_id AT4G17490.1  protein_id AT4G17490.1p  transcript_id AT4G17490.1  
At4g17500	chr4:009759405	0.0	W/9759405-9760211	AT4G17500.1  CDS  gene_syn ATERF-1, DL4785W, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1, FCAALL.123  gene ATERF-1  function Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-1). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.  go_component nuclear pore|GO:0005643|10715325|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355|10715325|IDA  go_process response to chitin|GO:0010200|17722694|IEP  go_function DNA binding|GO:0003677|10715325|TAS  go_function transcription factor activity|GO:0003700|10715325|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|10715325|IDA  product ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1); DNA binding / transcription activator/ transcription factor  note ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 (ATERF-1); FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: response to chitin, regulation of transcription, DNA-dependent; LOCATED IN: nuclear pore; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2); DNA binding / transcription activator/ transcription factor (TAIR:AT5G47220.1); Has 3785 Blast hits to 3692 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3777; Viruses - 2; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G17500.1p  transcript_id AT4G17500.1  protein_id AT4G17500.1p  transcript_id AT4G17500.1  
At4g17505	chr4:009766163	0.0	C/9766163-9766315,9765983-9766087,9765729-9765890,9765410-9765463,9765153-9765299,9764376-9764723	AT4G17505.1  CDS  gene_syn FCAALL.20  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38255.1); Has 391 Blast hits to 375 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 10; Plants - 377; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G17505.1p  transcript_id AT4G17505.1  protein_id AT4G17505.1p  transcript_id AT4G17505.1  
At4g17510	chr4:009768574	0.0	C/9768574-9768648,9768309-9768440,9768176-9768220,9767982-9768087,9767834-9767892,9767675-9767749,9767531-9767579,9767347-9767423,9767114-9767200	AT4G17510.1  CDS  gene_syn DL4790C, FCAALL.31, UBIQUITIN C-TERMINAL HYDROLASE 3, UCH3  gene UCH3  go_component intracellular|GO:0005622||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_component intracellular|GO:0005622||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_function ubiquitin thiolesterase activity|GO:0004221||ISS  product UCH3 (UBIQUITIN C-TERMINAL HYDROLASE 3); ubiquitin thiolesterase  note UBIQUITIN C-TERMINAL HYDROLASE 3 (UCH3); FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (InterPro:IPR001578); BEST Arabidopsis thaliana protein match is: UCH1; ubiquitin thiolesterase (TAIR:AT5G16310.1); Has 919 Blast hits to 915 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 504; Fungi - 219; Plants - 81; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).  protein_id AT4G17510.1p  transcript_id AT4G17510.1  protein_id AT4G17510.1p  transcript_id AT4G17510.1  
At4g17512	chr4:009769477	0.0	C/9769477-9770200	AT4G17512.1  pseudogenic_transcript  pseudo  function Pseudogene of AT4G17510; UCH3; ubiquitin thiolesterase  
At4g17520	chr4:009771496	0.0	W/9771496-9771646,9771882-9772176,9772264-9772329,9772428-9772557,9772649-9772807,9772931-9772981,9773083-9773313	AT4G17520.1  CDS  gene_syn DL4795W, FCAALL.142  go_component peroxisome|GO:0005777|17951448|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product nuclear RNA-binding protein, putative  note nuclear RNA-binding protein, putative; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hyaluronan/mRNA binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: nuclear RNA-binding protein, putative (TAIR:AT5G47210.1); Has 13357 Blast hits to 8375 proteins in 750 species: Archae - 13; Bacteria - 2605; Metazoa - 5274; Fungi - 1340; Plants - 1789; Viruses - 136; Other Eukaryotes - 2200 (source: NCBI BLink).  protein_id AT4G17520.1p  transcript_id AT4G17520.1  protein_id AT4G17520.1p  transcript_id AT4G17520.1  
At4g17530	chr4:009775411	0.0	C/9775411-9775424,9774836-9774908,9774650-9774697,9774519-9774566,9774345-9774416,9774112-9774267,9773912-9774015,9773721-9773814	AT4G17530.1  CDS  gene_syn ATRAB1C, ATRABD2C, DL4800C, FCAALL.87, RAB1C  gene ATRAB1C  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product ATRAB1C; GTP binding  note ATRAB1C; FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: ATRAB1A; GTP binding (TAIR:AT5G47200.1); Has 23593 Blast hits to 23542 proteins in 647 species: Archae - 17; Bacteria - 111; Metazoa - 13220; Fungi - 2827; Plants - 2160; Viruses - 19; Other Eukaryotes - 5239 (source: NCBI BLink).  protein_id AT4G17530.1p  transcript_id AT4G17530.1  protein_id AT4G17530.1p  transcript_id AT4G17530.1  
At4g17540	chr4:009775982	0.0	W/9775982-9776165,9776525-9776613,9776705-9776780,9776966-9777015,9777090-9777341,9777432-9777470,9777571-9777765	AT4G17540.1  CDS  gene_syn DL4805W, FCAALL.37  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 80 Blast hits to 67 proteins in 31 species: Archae - 4; Bacteria - 22; Metazoa - 9; Fungi - 3; Plants - 32; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT4G17540.1p  transcript_id AT4G17540.1  protein_id AT4G17540.1p  transcript_id AT4G17540.1  
At4g17550	chr4:009778664	0.0	C/9778664-9779738,9778070-9778591,9777938-9777975	AT4G17550.1  CDS  gene_syn DL4810C, FCAALL.41  go_component plasma membrane|GO:0005886|17151019|IDA  go_process carbohydrate transport|GO:0008643||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  product transporter-related  note transporter-related; FUNCTIONS IN: sugar:hydrogen symporter activity; INVOLVED IN: carbohydrate transport; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative (TAIR:AT3G47420.1); Has 9718 Blast hits to 9673 proteins in 1044 species: Archae - 74; Bacteria - 7916; Metazoa - 567; Fungi - 553; Plants - 93; Viruses - 0; Other Eukaryotes - 515 (source: NCBI BLink).  protein_id AT4G17550.1p  transcript_id AT4G17550.1  protein_id AT4G17550.1p  transcript_id AT4G17550.1  
At4g17560	chr4:009780343	0.0	W/9780343-9780372,9780455-9780772,9780940-9781026,9781116-9781249,9781644-9781752	AT4G17560.1  CDS  gene_syn DL4815W, FCAALL.39  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L19 family protein  note ribosomal protein L19 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, chloroplast stroma, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L19 (InterPro:IPR001857), Ribosomal protein L19, conserved site (InterPro:IPR018257); BEST Arabidopsis thaliana protein match is: ribosomal protein L19 family protein (TAIR:AT5G47190.1); Has 5332 Blast hits to 5332 proteins in 1492 species: Archae - 0; Bacteria - 2922; Metazoa - 96; Fungi - 46; Plants - 97; Viruses - 0; Other Eukaryotes - 2171 (source: NCBI BLink).  protein_id AT4G17560.1p  transcript_id AT4G17560.1  protein_id AT4G17560.1p  transcript_id AT4G17560.1  
At4g17565	chr4:009782508	0.0	C/9782508-9783644	AT4G17565.1  CDS  gene_syn FCAALL.44  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G05970.1); Has 295 Blast hits to 284 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 295; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G17565.1p  transcript_id AT4G17565.1  protein_id AT4G17565.1p  transcript_id AT4G17565.1  
At4g17570	chr4:009786935	0.0	C/9786935-9786974,9785996-9786364,9785504-9785903,9785337-9785409,9785119-9785222,9784846-9785035,9784650-9784770,9784329-9784564	AT4G17570.1  CDS  gene_syn DL4820C, FCAALL.45  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product zinc finger (GATA type) family protein  note zinc finger (GATA type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: zinc finger (GATA type) family protein (TAIR:AT5G47140.1); Has 593 Blast hits to 574 proteins in 91 species: Archae - 0; Bacteria - 4; Metazoa - 17; Fungi - 134; Plants - 403; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT4G17570.1p  transcript_id AT4G17570.1  protein_id AT4G17570.1p  transcript_id AT4G17570.1  
At4g17580	chr4:009791059	0.0	C/9791059-9791145,9790896-9790935,9790664-9790808,9790457-9790540,9790170-9790356,9789917-9790075,9789789-9789830	AT4G17580.1  CDS  gene_syn DL4825C, FCAALL.46  go_component integral to membrane|GO:0016021||IEA  go_process negative regulation of apoptosis|GO:0043066||IEA  go_process apoptosis|GO:0006915||ISS  go_process regulation of apoptosis|GO:0042981||ISS  go_function molecular_function|GO:0003674||ND  product Bax inhibitor-1 family protein / BI-1 family protein  note Bax inhibitor-1 family protein / BI-1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: negative regulation of apoptosis, regulation of apoptosis, apoptosis; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0005 (InterPro:IPR006214), Bax inhibitor 1, conserved site (InterPro:IPR006213); BEST Arabidopsis thaliana protein match is: ATBI1 (BAX INHIBITOR 1) (TAIR:AT5G47120.1); Has 1022 Blast hits to 1022 proteins in 424 species: Archae - 0; Bacteria - 522; Metazoa - 257; Fungi - 59; Plants - 58; Viruses - 11; Other Eukaryotes - 115 (source: NCBI BLink).  protein_id AT4G17580.1p  transcript_id AT4G17580.1  protein_id AT4G17580.1p  transcript_id AT4G17580.1  
At4g17585	chr4:009792977	0.0	C/9792977-9793259,9792523-9792698	AT4G17585.1  CDS  gene_syn FCAALL.48  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0005 (InterPro:IPR006214); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17970.1); Has 157 Blast hits to 157 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 157; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G17585.1p  transcript_id AT4G17585.1  protein_id AT4G17585.1p  transcript_id AT4G17585.1  
At4g17587	chr4:009796096	0.0	C/9796096-9797242	AT4G17587.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 5.8e-32 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At4g17590	chr4:009802573	0.0	C/9802573-9802591,9802413-9802487,9802121-9802302,9801969-9802037,9801814-9801891,9801009-9801110,9800843-9800923	AT4G17590.1  CDS  gene_syn DL4830C, FCAALL.66  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: nucleolar protein, putative (TAIR:AT4G26600.1); Has 62 Blast hits to 62 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 32; Fungi - 2; Plants - 24; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G17590.1p  transcript_id AT4G17590.1  protein_id AT4G17590.1p  transcript_id AT4G17590.1  
At4g17590	chr4:009802573	0.0	C/9802573-9802591,9802413-9802487,9802121-9802302,9801969-9802037,9801814-9801891,9801043-9801110,9800843-9800915	AT4G17590.2  CDS  gene_syn DL4830C, FCAALL.66  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: nucleolar protein, putative (TAIR:AT4G26600.1).  protein_id AT4G17590.2p  transcript_id AT4G17590.2  protein_id AT4G17590.2p  transcript_id AT4G17590.2  
At4g17600	chr4:009803759	0.0	W/9803759-9804152,9804251-9804388,9804458-9804714	AT4G17600.1  CDS  gene_syn DL4835W, FCAALL.30, LIL3:1  gene LIL3:1  function Encodes Lil3:1 (light-harvesting-like) protein. Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus. A generic LHC motif is present in Lil3:1.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product LIL3:1; transcription factor  note LIL3:1; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: lil3 protein, putative (TAIR:AT5G47110.1); Has 62 Blast hits to 62 proteins in 20 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT4G17600.1p  transcript_id AT4G17600.1  protein_id AT4G17600.1p  transcript_id AT4G17600.1  
At4g17610	chr4:009814755	0.0	C/9814755-9814910,9814576-9814669,9814382-9814488,9813804-9814279,9813506-9813716,9813123-9813422,9812874-9813036,9812505-9812642,9812290-9812371,9811847-9812130,9811610-9811786,9811288-9811532,9810958-9811206,9810706-9810861,9810422-9810562,9810060-9810299,9809795-9809919,9809581-9809698,9809321-9809482,9809090-9809237,9808904-9809004,9808651-9808812,9808510-9808557,9808258-9808389,9808020-9808094,9807800-9807884,9807602-9807717,9807382-9807512,9807162-9807249,9806884-9806943,9806567-9806807,9806348-9806499,9806151-9806221,9805912-9806068,9805652-9805813	AT4G17610.1  CDS  gene_syn DL4840C, FCAALL.71  go_component endomembrane system|GO:0012505||IEA  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_function RNA methyltransferase activity|GO:0008173||IEA  go_process RNA processing|GO:0006396||ISS  go_function RNA binding|GO:0003723||ISS  go_function RNA methyltransferase activity|GO:0008173||ISS  product tRNA/rRNA methyltransferase (SpoU) family protein  note tRNA/rRNA methyltransferase (SpoU) family protein; FUNCTIONS IN: RNA binding, RNA methyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537); Has 4280 Blast hits to 4276 proteins in 998 species: Archae - 3; Bacteria - 2585; Metazoa - 88; Fungi - 36; Plants - 48; Viruses - 0; Other Eukaryotes - 1520 (source: NCBI BLink).  protein_id AT4G17610.1p  transcript_id AT4G17610.1  protein_id AT4G17610.1p  transcript_id AT4G17610.1  
At4g17612	chr4:009815203	0.0	C/9815203-9815274	AT4G17612.1  tRNA  gene_syn 68169.TRNA-TRP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Trp (anticodon: CCA)  transcript_id AT4G17612.1  
At4g17615	chr4:009817142	0.0	W/9817142-9817220,9817635-9817717,9818017-9818076,9818181-9818289,9818380-9818432,9818553-9818633,9818730-9818842,9818932-9818995	AT4G17615.1  CDS  gene_syn ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, ATCBL1, CALCINEURIN B-LIKE PROTEIN 1, CBL1, FCAALL.122, SCABP5, SOS3-LIKE CALCIUM BINDING PROTEIN 5  gene CBL1  function Member of AtCBL (Calcineurin B-like Calcium Sensor Proteins) family. Protein level is increased upon high salt, mannitol, and cold stresses. CBL1 interacts with CIPK23 and recruits the kinase to the plasma membrane where the substrate(s) of CIPK23 may reside. CBL1 localization is regulated by protein modification including myristolation and acylation.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component plasma membrane|GO:0005886|17922773|IDA  go_process response to osmotic stress|GO:0006970|10200328|TAS  go_process response to osmotic stress|GO:0006970|12897256|IMP  go_process response to cold|GO:0009409|12897256|IEP  go_process response to water deprivation|GO:0009414|17922773|IMP  go_process response to salt stress|GO:0009651|12897256|IEP  go_process response to salt stress|GO:0009651|12897256|IMP  go_process abscisic acid mediated signaling|GO:0009738|12194854|TAS  go_process potassium ion import|GO:0010107|17922773|IGI  go_process stomatal movement|GO:0010118|17922773|IGI  go_process calcium-mediated signaling|GO:0019722|10590166|TAS  go_function calcium ion binding|GO:0005509|11230129|ISS  go_function calcium ion binding|GO:0005509||ISS  product CBL1 (CALCINEURIN B-LIKE PROTEIN 1); calcium ion binding  note CALCINEURIN B-LIKE PROTEIN 1 (CBL1); FUNCTIONS IN: calcium ion binding; INVOLVED IN: in 9 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), Recoverin (InterPro:IPR001125), Calcineurin B protein (InterPro:IPR015757), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CBL9; calcium ion binding (TAIR:AT5G47100.1); Has 5878 Blast hits to 5873 proteins in 578 species: Archae - 0; Bacteria - 10; Metazoa - 3387; Fungi - 630; Plants - 1160; Viruses - 0; Other Eukaryotes - 691 (source: NCBI BLink).  protein_id AT4G17615.1p  transcript_id AT4G17615.1  protein_id AT4G17615.1p  transcript_id AT4G17615.1  
At4g17615	chr4:009817981	0.0	W/9817981-9818076,9818181-9818289,9818380-9818432,9818553-9818633,9818730-9818842,9818932-9818995	AT4G17615.2  CDS  gene_syn ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, ATCBL1, CALCINEURIN B-LIKE PROTEIN 1, CBL1, FCAALL.122, SCABP5, SOS3-LIKE CALCIUM BINDING PROTEIN 5  gene CBL1  function Member of AtCBL (Calcineurin B-like Calcium Sensor Proteins) family. Protein level is increased upon high salt, mannitol, and cold stresses. CBL1 interacts with CIPK23 and recruits the kinase to the plasma membrane where the substrate(s) of CIPK23 may reside. CBL1 localization is regulated by protein modification including myristolation and acylation.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17922773|IDA  go_process response to osmotic stress|GO:0006970|10200328|TAS  go_process response to osmotic stress|GO:0006970|12897256|IMP  go_process response to cold|GO:0009409|12897256|IEP  go_process response to water deprivation|GO:0009414|17922773|IMP  go_process response to salt stress|GO:0009651|12897256|IEP  go_process response to salt stress|GO:0009651|12897256|IMP  go_process abscisic acid mediated signaling|GO:0009738|12194854|TAS  go_process potassium ion import|GO:0010107|17922773|IGI  go_process stomatal movement|GO:0010118|17922773|IGI  go_process calcium-mediated signaling|GO:0019722|10590166|TAS  go_function calcium ion binding|GO:0005509|11230129|ISS  go_function calcium ion binding|GO:0005509||ISS  product CBL1 (CALCINEURIN B-LIKE PROTEIN 1); calcium ion binding  note CALCINEURIN B-LIKE PROTEIN 1 (CBL1); FUNCTIONS IN: calcium ion binding; INVOLVED IN: in 8 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), Recoverin (InterPro:IPR001125), Calcineurin B protein (InterPro:IPR015757), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CBL9; calcium ion binding (TAIR:AT5G47100.1); Has 4387 Blast hits to 4383 proteins in 304 species: Archae - 0; Bacteria - 7; Metazoa - 2978; Fungi - 198; Plants - 769; Viruses - 0; Other Eukaryotes - 435 (source: NCBI BLink).  protein_id AT4G17615.2p  transcript_id AT4G17615.2  protein_id AT4G17615.2p  transcript_id AT4G17615.2  
At4g17616	chr4:009819608	0.0	W/9819608-9821632	AT4G17616.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G03100.1); Has 497 Blast hits to 452 proteins in 24 species: Archae - 0; Bacteria - 2; Metazoa - 6; Fungi - 0; Plants - 485; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G17616.1p  transcript_id AT4G17616.1  protein_id AT4G17616.1p  transcript_id AT4G17616.1  
At4g17620	chr4:009822005	0.0	W/9822005-9822413,9822496-9822743,9822827-9822892,9823042-9823120,9823211-9823290,9823390-9823413,9823493-9823617,9823801-9824017,9824130-9824183,9824268-9824314,9824426-9824510,9824576-9824639,9824723-9824859	AT4G17620.1  CDS  gene_syn DL4845W, FCAALL.74  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RAI1 like (InterPro:IPR013961); Has 42738 Blast hits to 8762 proteins in 679 species: Archae - 96; Bacteria - 22048; Metazoa - 7737; Fungi - 2748; Plants - 703; Viruses - 217; Other Eukaryotes - 9189 (source: NCBI BLink).  protein_id AT4G17620.1p  transcript_id AT4G17620.1  protein_id AT4G17620.1p  transcript_id AT4G17620.1  
At4g17620	chr4:009822005	0.0	W/9822005-9822413,9822496-9822743,9822827-9822892,9823042-9823120,9823211-9823290,9823390-9823413,9823493-9823617,9823801-9824017,9824130-9824183,9824268-9824314,9824426-9824514,9824580-9824639,9824723-9824859	AT4G17620.2  CDS  gene_syn DL4845W, FCAALL.74  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RAI1 like (InterPro:IPR013961); Has 42777 Blast hits to 8756 proteins in 678 species: Archae - 100; Bacteria - 22071; Metazoa - 7734; Fungi - 2745; Plants - 703; Viruses - 217; Other Eukaryotes - 9207 (source: NCBI BLink).  protein_id AT4G17620.2p  transcript_id AT4G17620.2  protein_id AT4G17620.2p  transcript_id AT4G17620.2  
At4g17640	chr4:009825438	0.0	W/9825438-9825654,9825992-9826216,9826344-9826453,9826543-9826708,9826858-9826988	AT4G17640.1  CDS  gene_syn CASEIN KINASE II BETA SUBUNIT CKB2, CKB2, DL4855W, FCAALL.14  gene CKB2  function Encodes casein kinase II beta (regulatory) subunit.  go_component protein kinase CK2 complex|GO:0005956||IEA  go_function protein kinase CK2 regulator activity|GO:0008605||IEA  go_component protein kinase CK2 complex|GO:0005956||ISS  go_process protein amino acid phosphorylation|GO:0006468|8061317|ISS  product CKB2; protein kinase CK2 regulator  note CKB2; FUNCTIONS IN: protein kinase CK2 regulator activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: protein kinase CK2 complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Casein kinase II, regulatory subunit, alpha-helical (InterPro:IPR016149), Casein kinase II, regulatory subunit, beta-sheet (InterPro:IPR016150), Casein kinase II, regulatory subunit (InterPro:IPR000704); BEST Arabidopsis thaliana protein match is: CKB1; protein kinase regulator (TAIR:AT5G47080.1); Has 852 Blast hits to 850 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 373; Fungi - 185; Plants - 108; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).  protein_id AT4G17640.1p  transcript_id AT4G17640.1  protein_id AT4G17640.1p  transcript_id AT4G17640.1  
At4g17650	chr4:009827749	0.0	W/9827749-9828068,9828525-9828720,9828817-9828948,9829321-9829443	AT4G17650.1  CDS  gene_syn DL4860W, FCAALL.381  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product aromatic-rich family protein  note aromatic-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); Has 1885 Blast hits to 1881 proteins in 667 species: Archae - 0; Bacteria - 1017; Metazoa - 157; Fungi - 73; Plants - 26; Viruses - 1; Other Eukaryotes - 611 (source: NCBI BLink).  protein_id AT4G17650.1p  transcript_id AT4G17650.1  protein_id AT4G17650.1p  transcript_id AT4G17650.1  
At4g17660	chr4:009831401	0.0	W/9831401-9831808,9831970-9832209,9832383-9832505,9832611-9833006	AT4G17660.1  CDS  gene_syn DL4865W, FCAALL.77  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT5G47070.1); Has 86903 Blast hits to 85921 proteins in 3234 species: Archae - 50; Bacteria - 7970; Metazoa - 38255; Fungi - 6859; Plants - 18770; Viruses - 364; Other Eukaryotes - 14635 (source: NCBI BLink).  protein_id AT4G17660.1p  transcript_id AT4G17660.1  protein_id AT4G17660.1p  transcript_id AT4G17660.1  
At4g17670	chr4:009834374	0.0	C/9834374-9834663,9833948-9834137	AT4G17670.1  CDS  gene_syn DL4870C, FCAALL.414  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product senescence-associated protein-related  note senescence-associated protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: senescence-associated protein-related (TAIR:AT5G47060.1); Has 285 Blast hits to 285 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 285; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G17670.1p  transcript_id AT4G17670.1  protein_id AT4G17670.1p  transcript_id AT4G17670.1  
At4g17680	chr4:009843500	0.0	C/9843500-9843703,9842903-9843427	AT4G17680.2  CDS  gene_syn DL4875C, FCAALL.78  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT5G47050.1); Has 246 Blast hits to 245 proteins in 45 species: Archae - 0; Bacteria - 6; Metazoa - 29; Fungi - 9; Plants - 176; Viruses - 3; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT4G17680.2p  transcript_id AT4G17680.2  protein_id AT4G17680.2p  transcript_id AT4G17680.2  
At4g17680	chr4:009843998	0.0	C/9843998-9844095,9843830-9843900,9843500-9843750,9842903-9843427	AT4G17680.1  CDS  gene_syn DL4875C, FCAALL.78  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT5G47050.1); Has 262 Blast hits to 261 proteins in 49 species: Archae - 0; Bacteria - 6; Metazoa - 30; Fungi - 15; Plants - 179; Viruses - 3; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT4G17680.1p  transcript_id AT4G17680.1  protein_id AT4G17680.1p  transcript_id AT4G17680.1  
At4g17690	chr4:009846127	0.0	W/9846127-9847107	AT4G17690.1  CDS  gene_syn DL4880W, FCAALL.96  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT5G47000.1); Has 3186 Blast hits to 3173 proteins in 245 species: Archae - 0; Bacteria - 6; Metazoa - 2; Fungi - 308; Plants - 2820; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT4G17690.1p  transcript_id AT4G17690.1  protein_id AT4G17690.1p  transcript_id AT4G17690.1  
At4g17695	chr4:009850134	0.0	C/9850134-9850698,9849919-9849995,9849093-9849138,9848930-9849014,9848658-9848718,9848134-9848268	AT4G17695.1  CDS  gene_syn KAN3, KANADI 3  gene KAN3  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product KAN3 (KANADI 3); DNA binding / transcription factor  note KANADI 3 (KAN3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KAN2 (KANADI 2); DNA binding / transcription factor (TAIR:AT1G32240.1); Has 875 Blast hits to 875 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 868; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT4G17695.1p  transcript_id AT4G17695.1  protein_id AT4G17695.1p  transcript_id AT4G17695.1  
At4g17700	chr4:009854322	0.0	W/9854322-9854363,9854543-9854683,9854781-9854982,9855118-9855227	AT4G17700.1  CDS  gene_syn DL4885W, FCAALL.98  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17990.1); Has 63 Blast hits to 62 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G17700.1p  transcript_id AT4G17700.1  protein_id AT4G17700.1p  transcript_id AT4G17700.1  
At4g17710	chr4:009859139	0.0	C/9859139-9859288,9858892-9859055,9858667-9858784,9858367-9858519,9857931-9858290,9857746-9857844,9857274-9857658,9856950-9857185,9856780-9856875,9856327-9856695	AT4G17710.1  CDS  gene_syn DL4890C, FCAALL.102, HDG4, HOMEODOMAIN GLABROUS 4  gene HDG4  function Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product HDG4 (HOMEODOMAIN GLABROUS 4); DNA binding / transcription factor  note HOMEODOMAIN GLABROUS 4 (HDG4); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: HB-7 (HOMEOBOX-7); DNA binding / transcription factor (TAIR:AT5G46880.1); Has 8377 Blast hits to 8333 proteins in 401 species: Archae - 0; Bacteria - 4; Metazoa - 6496; Fungi - 184; Plants - 1529; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).  protein_id AT4G17710.1p  transcript_id AT4G17710.1  protein_id AT4G17710.1p  transcript_id AT4G17710.1  
At4g17713	chr4:009860160	0.0	C/9860160-9860208,9859795-9860045	AT4G17713.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17718.1); Has 10 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G17713.1p  transcript_id AT4G17713.1  protein_id AT4G17713.1p  transcript_id AT4G17713.1  
At4g17718	chr4:009861947	0.0	C/9861947-9861995,9861596-9861852	AT4G17718.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G06166.1); Has 11 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G17718.1p  transcript_id AT4G17718.1  protein_id AT4G17718.1p  transcript_id AT4G17718.1  
At4g17720	chr4:009864493	0.0	C/9864493-9864498,9863743-9863846,9863576-9863651,9863408-9863488,9862660-9863334	AT4G17720.1  CDS  gene_syn DL4895C, FCAALL.73  go_process oxidation reduction|GO:0055114||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function nucleic acid binding|GO:0003676||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT5G46870.1); Has 381 Blast hits to 361 proteins in 83 species: Archae - 2; Bacteria - 16; Metazoa - 30; Fungi - 84; Plants - 147; Viruses - 12; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT4G17720.1p  transcript_id AT4G17720.1  protein_id AT4G17720.1p  transcript_id AT4G17720.1  
At4g17730	chr4:009865351	0.0	W/9865351-9865550,9865640-9865733,9865816-9865955,9866028-9866102,9866184-9866341,9866425-9866524,9866635-9866635	AT4G17730.1  CDS  gene_syn ATSYP23, DL4901W, FCAALL.117, SYNTAXIN OF PLANTS 23, SYP23  gene SYP23  function member of SYP2 Gene Family  go_component plasma membrane|GO:0005886|17151019|IDA  go_process intracellular protein transport|GO:0006886|11115874|TAS  go_process membrane fusion|GO:0006944|11115874|TAS  go_function SNAP receptor activity|GO:0005484|11115874|TAS  product SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptor  note SYNTAXIN OF PLANTS 23 (SYP23); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion, intracellular protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), t-SNARE (InterPro:IPR010989), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: VAM3; SNAP receptor (TAIR:AT5G46860.1); Has 1274 Blast hits to 1274 proteins in 179 species: Archae - 0; Bacteria - 2; Metazoa - 694; Fungi - 185; Plants - 254; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).  protein_id AT4G17730.1p  transcript_id AT4G17730.1  protein_id AT4G17730.1p  transcript_id AT4G17730.1  
At4g17730	chr4:009865351	0.0	W/9865351-9865550,9865640-9865733,9865816-9865955,9866028-9866102,9866184-9866341,9866425-9866524,9866696-9866717	AT4G17730.2  CDS  gene_syn ATSYP23, DL4901W, FCAALL.117, SYNTAXIN OF PLANTS 23, SYP23  gene SYP23  function member of SYP2 Gene Family  go_component plasma membrane|GO:0005886|17151019|IDA  go_process intracellular protein transport|GO:0006886|11115874|TAS  go_process membrane fusion|GO:0006944|11115874|TAS  go_function SNAP receptor activity|GO:0005484|11115874|TAS  product SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptor  note SYNTAXIN OF PLANTS 23 (SYP23); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion, intracellular protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: VAM3; SNAP receptor (TAIR:AT5G46860.1); Has 1307 Blast hits to 1307 proteins in 179 species: Archae - 0; Bacteria - 2; Metazoa - 713; Fungi - 192; Plants - 254; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).  protein_id AT4G17730.2p  transcript_id AT4G17730.2  protein_id AT4G17730.2p  transcript_id AT4G17730.2  
At4g17740	chr4:009869639	0.0	C/9869639-9869719,9869246-9869507,9869000-9869149,9868839-9868921,9868543-9868751,9868365-9868433,9868175-9868293,9868008-9868083,9867890-9867931,9867688-9867796,9867491-9867588,9867316-9867409,9867088-9867213	AT4G17740.2  CDS  gene_syn DL4905C, FCAALL.169  go_component thylakoid|GO:0009579|16648217|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_process proteolysis|GO:0006508||IEA  go_function protein binding|GO:0005515||IEA  go_function serine-type peptidase activity|GO:0008236||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_process intracellular signaling cascade|GO:0007242||ISS  product C-terminal processing protease, putative  note C-terminal processing protease, putative; FUNCTIONS IN: serine-type peptidase activity, protein binding; INVOLVED IN: proteolysis, intracellular signaling cascade; LOCATED IN: thylakoid, thylakoid lumen, mitochondrion, chloroplast thylakoid lumen; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S41 (InterPro:IPR005151), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase S41A, C-terminal protease (InterPro:IPR004447); BEST Arabidopsis thaliana protein match is: peptidase S41 family protein (TAIR:AT3G57680.1); Has 6571 Blast hits to 6568 proteins in 1046 species: Archae - 0; Bacteria - 3170; Metazoa - 11; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 3310 (source: NCBI BLink).  protein_id AT4G17740.2p  transcript_id AT4G17740.2  protein_id AT4G17740.2p  transcript_id AT4G17740.2  
At4g17740	chr4:009869639	0.0	C/9869639-9869719,9869246-9869537,9869000-9869149,9868839-9868921,9868543-9868751,9868365-9868433,9868175-9868293,9868008-9868083,9867890-9867931,9867688-9867796,9867491-9867588,9867316-9867409,9867088-9867213	AT4G17740.1  CDS  gene_syn DL4905C, FCAALL.169  go_component thylakoid|GO:0009579|16648217|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_process proteolysis|GO:0006508||IEA  go_function protein binding|GO:0005515||IEA  go_function serine-type peptidase activity|GO:0008236||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_process intracellular signaling cascade|GO:0007242||ISS  product C-terminal processing protease, putative  note C-terminal processing protease, putative; FUNCTIONS IN: serine-type peptidase activity, protein binding; INVOLVED IN: proteolysis, intracellular signaling cascade; LOCATED IN: thylakoid, thylakoid lumen, mitochondrion, chloroplast thylakoid lumen; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S41 (InterPro:IPR005151), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase S41A, C-terminal protease (InterPro:IPR004447); BEST Arabidopsis thaliana protein match is: peptidase S41 family protein (TAIR:AT3G57680.1); Has 6571 Blast hits to 6568 proteins in 1046 species: Archae - 0; Bacteria - 3170; Metazoa - 11; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 3310 (source: NCBI BLink).  protein_id AT4G17740.1p  transcript_id AT4G17740.1  protein_id AT4G17740.1p  transcript_id AT4G17740.1  
At4g17750	chr4:009871271	0.0	C/9871271-9871603,9869969-9871123	AT4G17750.1  CDS  gene_syn ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, ATHSF1, ATHSFA1A, CLASS A HEAT SHOCK FACTOR 1A, DL4910C, FCAALL.107, HEAT SHOCK FACTOR, HEAT SHOCK FACTOR 1, HSF1, HSFA1A  gene HSF1  function native protein is a trimer, interacts with HSP70, also with TBP, DNA interaction is modulated by phosphorylation and is heat-shock inducible  go_component nucleus|GO:0005634||IEA  go_process response to heat|GO:0009408|7948881|IEP  go_function DNA binding|GO:0003677|7948881|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function protein binding|GO:0005515|11807141|IPI  product HSF1 (HEAT SHOCK FACTOR 1); DNA binding / protein binding / transcription factor  note HEAT SHOCK FACTOR 1 (HSF1); FUNCTIONS IN: protein binding, transcription factor activity, DNA binding; INVOLVED IN: response to heat; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: ATHSFA1D; DNA binding / transcription factor (TAIR:AT1G32330.1); Has 106265 Blast hits to 11862 proteins in 267 species: Archae - 60; Bacteria - 104; Metazoa - 1955; Fungi - 2934; Plants - 622; Viruses - 2; Other Eukaryotes - 100588 (source: NCBI BLink).  protein_id AT4G17750.1p  transcript_id AT4G17750.1  protein_id AT4G17750.1p  transcript_id AT4G17750.1  
At4g17760	chr4:009871820	0.0	W/9871820-9871936,9872010-9872099,9872186-9872340,9872419-9872539,9872626-9872745,9872833-9872903,9873029-9873257	AT4G17760.1  CDS  gene_syn DL4915W, FCAALL.108  go_component nucleus|GO:0005634||IEA  go_process DNA repair|GO:0006281||IEA  go_function damaged DNA binding|GO:0003684||IEA  go_function exodeoxyribonuclease III activity|GO:0008853||IEA  product damaged DNA binding / exodeoxyribonuclease III  note damaged DNA binding / exodeoxyribonuclease III; FUNCTIONS IN: damaged DNA binding, exodeoxyribonuclease III activity; INVOLVED IN: DNA repair; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Repair protein Rad1/Rec1 (InterPro:IPR003021); Has 154 Blast hits to 154 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT4G17760.1p  transcript_id AT4G17760.1  protein_id AT4G17760.1p  transcript_id AT4G17760.1  
At4g17760	chr4:009871921	0.0	W/9871921-9871936,9872059-9872099,9872186-9872340,9872419-9872539,9872626-9872745,9872833-9872903,9873029-9873257	AT4G17760.2  CDS  gene_syn DL4915W, FCAALL.108  go_component nucleus|GO:0005634||IEA  go_process DNA repair|GO:0006281||IEA  go_function damaged DNA binding|GO:0003684||IEA  go_function exodeoxyribonuclease III activity|GO:0008853||IEA  product damaged DNA binding / exodeoxyribonuclease III  note damaged DNA binding / exodeoxyribonuclease III; FUNCTIONS IN: damaged DNA binding, exodeoxyribonuclease III activity; INVOLVED IN: DNA repair; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Repair protein Rad1/Rec1 (InterPro:IPR003021); Has 113 Blast hits to 113 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 78; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G17760.2p  transcript_id AT4G17760.2  protein_id AT4G17760.2p  transcript_id AT4G17760.2  
At4g17765	chr4:009873512	0.0	C/9873512-9873583	AT4G17765.1  tRNA  gene_syn 68169.TRNA-TRP-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Trp (anticodon: CCA)  transcript_id AT4G17765.1  
At4g17770	chr4:009877055	0.0	W/9877055-9879042,9879386-9879659,9879758-9880084	AT4G17770.1  CDS  gene_syn ATTPS5, DL4920W, FCAALL.9, TPS5, TREHALOSE -6-PHOSPHATASE SYNTHASE S5  gene ATTPS5  function Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain.  go_process trehalose biosynthetic process|GO:0005992||IEA  go_process metabolic process|GO:0008152||IEA  go_process trehalose biosynthetic process|GO:0005992||ISS  go_function trehalose-phosphatase activity|GO:0004805||ISS  go_function protein binding|GO:0005515|16771775|IPI  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product ATTPS5; protein binding / transferase, transferring glycosyl groups / trehalose-phosphatase  note ATTPS5; FUNCTIONS IN: protein binding, transferase activity, transferring glycosyl groups, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process, metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Glycosyl transferase, family 20 (InterPro:IPR001830), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: ATTPS6; alpha,alpha-trehalose-phosphate synthase (UDP-forming)/ transferase, transferring glycosyl groups / trehalose-phosphatase (TAIR:AT1G68020.2); Has 2690 Blast hits to 2645 proteins in 620 species: Archae - 34; Bacteria - 1344; Metazoa - 128; Fungi - 476; Plants - 315; Viruses - 0; Other Eukaryotes - 393 (source: NCBI BLink).  protein_id AT4G17770.1p  transcript_id AT4G17770.1  protein_id AT4G17770.1p  transcript_id AT4G17770.1  
At4g17780	chr4:009880464	0.0	C/9880464-9881455,9880321-9880372	AT4G17780.1  CDS  gene_syn DL4925C, FCAALL.161  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein / S locus-related (TAIR:AT2G43260.1); Has 461 Blast hits to 454 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 459; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G17780.1p  transcript_id AT4G17780.1  protein_id AT4G17780.1p  transcript_id AT4G17780.1  
At4g17785	chr4:009883103	0.0	C/9883103-9883368,9881988-9882767,9881867-9881903	AT4G17785.1  CDS  gene_syn MYB39, myb domain protein 39  gene MYB39  function Encodes a putative transcription factor (MYB39).  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product MYB39 (myb domain protein 39); DNA binding / transcription factor  note myb domain protein 39 (MYB39); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB107 (myb domain protein 107); DNA binding / transcription factor (TAIR:AT3G02940.1); Has 6252 Blast hits to 5794 proteins in 352 species: Archae - 0; Bacteria - 0; Metazoa - 662; Fungi - 271; Plants - 3802; Viruses - 6; Other Eukaryotes - 1511 (source: NCBI BLink).  protein_id AT4G17785.1p  transcript_id AT4G17785.1  protein_id AT4G17785.1p  transcript_id AT4G17785.1  
At4g17788	chr4:009888986	0.0	W/9888986-9889066	AT4G17788.1  miRNA  gene_syn MICRORNA 160, MICRORNA160B, MIR160, MIR160B  gene MIR160B  function Encodes a microRNA that targets several ARF family members (ARF10, ARF16, ARF17). MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGCCUGGCUCCCUGUAUGCCA  go_process auxin mediated signaling pathway|GO:0009734|17672844|IMP  go_process abscisic acid mediated signaling|GO:0009738|17672844|IMP  go_process response to carbohydrate stimulus|GO:0009743|17672844|IMP  go_process fruit development|GO:0010154|17672844|IMP  go_process regulation of anthocyanin biosynthetic process|GO:0031540|17672844|IMP  go_process gene silencing by miRNA|GO:0035195|15851028|IDA  go_process leaf development|GO:0048366|17672844|IMP  go_process petal development|GO:0048441|17672844|IMP  go_process sepal development|GO:0048442|17672844|IMP  go_process developmental growth|GO:0048589|17672844|IMP  product MIR160B (MICRORNA160B); miRNA  transcript_id AT4G17788.1  
At4g17790	chr4:009891425	0.0	W/9891425-9891651,9891917-9892187,9892284-9892454,9892550-9892675	AT4G17790.1  CDS  gene_syn DL4930W, FCAALL.62  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G71940.1); Has 2258 Blast hits to 2258 proteins in 517 species: Archae - 4; Bacteria - 1129; Metazoa - 188; Fungi - 22; Plants - 104; Viruses - 0; Other Eukaryotes - 811 (source: NCBI BLink).  protein_id AT4G17790.1p  transcript_id AT4G17790.1  protein_id AT4G17790.1p  transcript_id AT4G17790.1  
At4g17800	chr4:009895549	0.0	C/9895549-9896427	AT4G17800.1  CDS  gene_syn DL4935C, FCAALL.129  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product DNA-binding protein-related  note DNA-binding protein-related; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: DNA-binding protein-related (TAIR:AT2G35270.1); Has 586 Blast hits to 584 proteins in 85 species: Archae - 0; Bacteria - 79; Metazoa - 54; Fungi - 7; Plants - 430; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT4G17800.1p  transcript_id AT4G17800.1  protein_id AT4G17800.1p  transcript_id AT4G17800.1  
At4g17810	chr4:009906918	0.0	W/9906918-9907532	AT4G17810.1  CDS  gene_syn DL4940W, FCAALL.130  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product nucleic acid binding / transcription factor/ zinc ion binding  note nucleic acid binding / transcription factor/ zinc ion binding; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: ZFP10 (ZINC-FINGER PROTEIN 10); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT2G37740.1); Has 396 Blast hits to 394 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G17810.1p  transcript_id AT4G17810.1  protein_id AT4G17810.1p  transcript_id AT4G17810.1  
At4g17820	chr4:009909147	0.0	C/9909147-9912044	AT4G17820.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 6.7e-11 P-value blast match to GB:AAC24836 pol polyprotein (Ty1_Copia-element) (Candida albicans)  
At4g17830	chr4:009915916	0.0	W/9915916-9916251,9916457-9916701,9916793-9916901,9916978-9917116,9917199-9917274,9917355-9917477,9917568-9917721,9917828-9917861,9917943-9918049	AT4G17830.1  CDS  go_process proteolysis|GO:0006508||IEA  go_function metallopeptidase activity|GO:0008237||IEA  go_function hydrolase activity|GO:0016787||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_process proteolysis|GO:0006508||ISS  go_function metallopeptidase activity|GO:0008237||ISS  product peptidase M20/M25/M40 family protein  note peptidase M20/M25/M40 family protein; FUNCTIONS IN: metallopeptidase activity, hydrolase activity, protein dimerization activity; INVOLVED IN: proteolysis; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M20 (InterPro:IPR002933), Peptidase M20, dimerisation (InterPro:IPR011650); Has 3666 Blast hits to 3666 proteins in 847 species: Archae - 111; Bacteria - 2102; Metazoa - 209; Fungi - 100; Plants - 33; Viruses - 0; Other Eukaryotes - 1111 (source: NCBI BLink).  protein_id AT4G17830.1p  transcript_id AT4G17830.1  protein_id AT4G17830.1p  transcript_id AT4G17830.1  
At4g17840	chr4:009919716	0.0	C/9919716-9920190,9919451-9919602,9919269-9919364,9919127-9919189,9918967-9919035,9918775-9918877,9918621-9918692,9918453-9918541,9918222-9918371	AT4G17840.1  CDS  gene_syn T6K21.20, T6K21_20  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35260.1); Has 1905 Blast hits to 183 proteins in 52 species: Archae - 0; Bacteria - 24; Metazoa - 708; Fungi - 70; Plants - 25; Viruses - 2; Other Eukaryotes - 1076 (source: NCBI BLink).  protein_id AT4G17840.1p  transcript_id AT4G17840.1  protein_id AT4G17840.1p  transcript_id AT4G17840.1  
At4g17850	chr4:009922990	0.0	W/9922990-9923097,9923189-9923274,9923376-9923526,9923632-9923850	AT4G17850.1  CDS  gene_syn T6K21.30, T6K21_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT5G16680.1); Has 121 Blast hits to 116 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 55; Fungi - 4; Plants - 57; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G17850.1p  transcript_id AT4G17850.1  protein_id AT4G17850.1p  transcript_id AT4G17850.1  
At4g17860	chr4:009926269	0.0	C/9926269-9926337,9926105-9926185,9925831-9926010,9925551-9925718,9925413-9925466,9925152-9925298,9924698-9925069	AT4G17860.1  CDS  gene_syn T6K21.40, T6K21_40  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, shoot apex, embryo, petiole, leaf; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46200.1); Has 368 Blast hits to 351 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 362; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G17860.1p  transcript_id AT4G17860.1  protein_id AT4G17860.1p  transcript_id AT4G17860.1  
At4g17870	chr4:009928792	0.0	W/9928792-9929367	AT4G17870.1  CDS  gene_syn T6K21.50, T6K21_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46790.1); Has 177 Blast hits to 177 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G17870.1p  transcript_id AT4G17870.1  protein_id AT4G17870.1p  transcript_id AT4G17870.1  
At4g17880	chr4:009933702	0.0	C/9933702-9935471	AT4G17880.1  CDS  gene_syn T6K21.60, T6K21_60  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT5G46760.1); Has 2486 Blast hits to 2337 proteins in 364 species: Archae - 0; Bacteria - 12; Metazoa - 532; Fungi - 77; Plants - 1801; Viruses - 13; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT4G17880.1p  transcript_id AT4G17880.1  protein_id AT4G17880.1p  transcript_id AT4G17880.1  
At4g17890	chr4:009937121	0.0	W/9937121-9937198,9937336-9937454,9937778-9938210,9938301-9938576,9938659-9938784,9938866-9938967,9939039-9939146	AT4G17890.1  CDS  gene_syn AGD8, ARF-GAP DOMAIN 8, T6K21.1  gene AGD8  function A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.  go_process regulation of ARF GTPase activity|GO:0032312||IEA  go_function ARF GTPase activator activity|GO:0008060||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_function DNA binding|GO:0003677||ISS  product AGD8 (ARF-GAP DOMAIN 8); ARF GTPase activator/ DNA binding / zinc ion binding  note ARF-GAP DOMAIN 8 (AGD8); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: AGD9 (ARF-GAP DOMAIN 9); ARF GTPase activator/ DNA binding / zinc ion binding (TAIR:AT5G46750.1); Has 4520 Blast hits to 2827 proteins in 209 species: Archae - 0; Bacteria - 93; Metazoa - 1809; Fungi - 499; Plants - 300; Viruses - 0; Other Eukaryotes - 1819 (source: NCBI BLink).  protein_id AT4G17890.1p  transcript_id AT4G17890.1  protein_id AT4G17890.1p  transcript_id AT4G17890.1  
At4g17890	chr4:009937121	0.0	W/9937121-9937198,9937336-9937454,9937778-9938210,9938301-9938576,9938659-9938784,9938866-9938988	AT4G17890.2  CDS  gene_syn AGD8, ARF-GAP DOMAIN 8, T6K21.1  gene AGD8  function A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.  go_process regulation of ARF GTPase activity|GO:0032312||IEA  go_function ARF GTPase activator activity|GO:0008060||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_function DNA binding|GO:0003677||ISS  product AGD8 (ARF-GAP DOMAIN 8); ARF GTPase activator/ DNA binding / zinc ion binding  note ARF-GAP DOMAIN 8 (AGD8); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: AGD9 (ARF-GAP DOMAIN 9); ARF GTPase activator/ DNA binding / zinc ion binding (TAIR:AT5G46750.1); Has 4459 Blast hits to 2788 proteins in 202 species: Archae - 0; Bacteria - 78; Metazoa - 1878; Fungi - 498; Plants - 302; Viruses - 0; Other Eukaryotes - 1703 (source: NCBI BLink).  protein_id AT4G17890.2p  transcript_id AT4G17890.2  protein_id AT4G17890.2p  transcript_id AT4G17890.2  
At4g17895	chr4:009939914	0.0	W/9939914-9940435,9940518-9940638,9940723-9940833,9940942-9941096,9941199-9941528,9941624-9941746,9941839-9942343,9942478-9942698	AT4G17895.1  CDS  gene_syn UBIQUITIN-SPECIFIC PROTEASE 20, UBP20  gene UBP20  function Encodes a ubiquitin-specific protease.  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_function ubiquitin-specific protease activity|GO:0004843||ISS  product UBP20 (UBIQUITIN-SPECIFIC PROTEASE 20); ubiquitin thiolesterase/ ubiquitin-specific protease  note UBIQUITIN-SPECIFIC PROTEASE 20 (UBP20); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: UBP21 (UBIQUITIN-SPECIFIC PROTEASE 21); ubiquitin thiolesterase/ ubiquitin-specific protease (TAIR:AT5G46740.1); Has 5991 Blast hits to 5402 proteins in 199 species: Archae - 0; Bacteria - 18; Metazoa - 3232; Fungi - 868; Plants - 531; Viruses - 5; Other Eukaryotes - 1337 (source: NCBI BLink).  protein_id AT4G17895.1p  transcript_id AT4G17895.1  protein_id AT4G17895.1p  transcript_id AT4G17895.1  
At4g17900	chr4:009946046	0.0	W/9946046-9946108,9946693-9946890,9946979-9947197,9947494-9947697	AT4G17900.1  CDS  gene_syn T6K21.80, T6K21_80  go_process biological_process|GO:0008150||ND  go_function binding|GO:0005488||ISS  product zinc-binding family protein  note zinc-binding family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734); BEST Arabidopsis thaliana protein match is: zinc-binding family protein (TAIR:AT1G32700.1); Has 193 Blast hits to 193 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 193; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G17900.1p  transcript_id AT4G17900.1  protein_id AT4G17900.1p  transcript_id AT4G17900.1  
At4g17900	chr4:009946813	0.0	W/9946813-9946890,9946979-9947197,9947494-9947697	AT4G17900.2  CDS  gene_syn T6K21.80, T6K21_80  go_process biological_process|GO:0008150||ND  go_function binding|GO:0005488||ISS  product zinc-binding family protein  note zinc-binding family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734); BEST Arabidopsis thaliana protein match is: zinc-binding family protein (TAIR:AT1G32700.2); Has 190 Blast hits to 190 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 190; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G17900.2p  transcript_id AT4G17900.2  protein_id AT4G17900.2p  transcript_id AT4G17900.2  
At4g17905	chr4:009948853	0.0	C/9948853-9949785	AT4G17905.1  CDS  gene_syn ATL4H  gene ATL4H  function Putative RING-H2 finger protein ATL4H.  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product ATL4H; protein binding / zinc ion binding  note ATL4H; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G17600.1); Has 6636 Blast hits to 6617 proteins in 230 species: Archae - 0; Bacteria - 0; Metazoa - 2137; Fungi - 519; Plants - 2770; Viruses - 62; Other Eukaryotes - 1148 (source: NCBI BLink).  protein_id AT4G17905.1p  transcript_id AT4G17905.1  protein_id AT4G17905.1p  transcript_id AT4G17905.1  
At4g17908	chr4:009950633	0.0	W/9950633-9951125	AT4G17908.1  pseudogenic_transcript  pseudo  function pseudogene of ubiquitin-specific protease  
At4g17910	chr4:009953623	0.0	C/9953623-9953689,9953419-9953549,9953261-9953337,9953122-9953194,9952952-9953041,9952766-9952839,9952575-9952662,9952367-9952493,9952181-9952285,9951987-9952110,9951855-9951906,9951736-9951780,9951550-9951648,9951322-9951474	AT4G17910.1  CDS  gene_syn T6K21.90, T6K21_90  go_component endoplasmic reticulum membrane|GO:0005789||IEA  go_component integral to membrane|GO:0016021||IEA  go_process GPI anchor biosynthetic process|GO:0006506||IEA  go_function transferase activity, transferring acyl groups|GO:0016746||IEA  product transferase, transferring acyl groups  note transferase, transferring acyl groups; FUNCTIONS IN: transferase activity, transferring acyl groups; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: integral to membrane, endoplasmic reticulum membrane; CONTAINS InterPro DOMAIN/s: GWT1 (InterPro:IPR009447); Has 78 Blast hits to 78 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 61; Fungi - 11; Plants - 4; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G17910.1p  transcript_id AT4G17910.1  protein_id AT4G17910.1p  transcript_id AT4G17910.1  
At4g17914	chr4:009958159	0.0	W/9958159-9958733	AT4G17914.1  pseudogenic_transcript  pseudo  function pseudogene of ubiquitin-specific protease  
At4g17915	chr4:009959013	0.0	C/9959013-9960404	AT4G17915.1  pseudogenic_transcript  pseudo  function pseudogene of pentatricopeptide (PPR) repeat-containing/C3HC4-type RING finger containing protein  
At4g17920	chr4:009963221	0.0	C/9963221-9964090	AT4G17920.1  CDS  gene_syn T6K21.100, T6K21_100  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G46650.1); Has 5988 Blast hits to 5973 proteins in 215 species: Archae - 0; Bacteria - 0; Metazoa - 2097; Fungi - 502; Plants - 2381; Viruses - 34; Other Eukaryotes - 974 (source: NCBI BLink).  protein_id AT4G17920.1p  transcript_id AT4G17920.1  protein_id AT4G17920.1p  transcript_id AT4G17920.1  
At4g17930	chr4:009964619	0.0	W/9964619-9964840	AT4G17930.1  CDS  gene_syn T6K21.110, T6K21_110  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G17930.1p  transcript_id AT4G17930.1  protein_id AT4G17930.1p  transcript_id AT4G17930.1  
At4g17940	chr4:009965787	0.0	W/9965787-9966317,9966393-9966565,9966658-9966778	AT4G17940.1  CDS  gene_syn T6K21.120, T6K21_120  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT5G20190.1); Has 378 Blast hits to 251 proteins in 46 species: Archae - 2; Bacteria - 99; Metazoa - 16; Fungi - 0; Plants - 207; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT4G17940.1p  transcript_id AT4G17940.1  protein_id AT4G17940.1p  transcript_id AT4G17940.1  
At4g17950	chr4:009968368	0.0	C/9968368-9969007,9968205-9968260,9967990-9968127,9967702-9967863,9967295-9967618	AT4G17950.1  CDS  gene_syn T6K21.130, T6K21_130  go_function DNA binding|GO:0003677||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product DNA-binding family protein  note DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding, conserved site (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: DNA-binding family protein (TAIR:AT5G46640.1); Has 25892 Blast hits to 11638 proteins in 527 species: Archae - 0; Bacteria - 1043; Metazoa - 9664; Fungi - 2922; Plants - 1204; Viruses - 47; Other Eukaryotes - 11012 (source: NCBI BLink).  protein_id AT4G17950.1p  transcript_id AT4G17950.1  protein_id AT4G17950.1p  transcript_id AT4G17950.1  
At4g17960	chr4:009971154	0.0	W/9971154-9971378,9971988-9972227	AT4G17960.1  CDS  gene_syn T6K21.140, T6K21_140  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46620.1); Has 22 Blast hits to 21 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G17960.1p  transcript_id AT4G17960.1  protein_id AT4G17960.1p  transcript_id AT4G17960.1  
At4g17970	chr4:009975482	0.0	W/9975482-9975761,9975874-9976014,9976171-9976443,9976571-9976683,9976761-9976904,9976991-9977722	AT4G17970.1  CDS  gene_syn T6K21.150, T6K21_150  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0005 (InterPro:IPR006214); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46610.1); Has 461 Blast hits to 451 proteins in 136 species: Archae - 0; Bacteria - 214; Metazoa - 0; Fungi - 11; Plants - 209; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT4G17970.1p  transcript_id AT4G17970.1  protein_id AT4G17970.1p  transcript_id AT4G17970.1  
At4g17975	chr4:009978106	0.0	C/9978106-9978177	AT4G17975.1  tRNA  gene_syn 67119.TRNA-CYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Cys (anticodon: GCA)  transcript_id AT4G17975.1  
At4g17980	chr4:009979882	0.0	C/9979882-9980038,9979502-9979791,9979174-9979398,9978994-9979083,9978850-9978876	AT4G17980.1  CDS  gene_syn Arabidopsis NAC domain containing protein 71, T6K21.160, T6K21_160, anac071  gene anac071  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac071 (Arabidopsis NAC domain containing protein 71); transcription factor  note Arabidopsis NAC domain containing protein 71 (anac071); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac096 (Arabidopsis NAC domain containing protein 96); transcription factor (TAIR:AT5G46590.1); Has 1596 Blast hits to 1594 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1596; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G17980.1p  transcript_id AT4G17980.1  protein_id AT4G17980.1p  transcript_id AT4G17980.1  
At4g17990	chr4:009988143	0.0	C/9988143-9988253,9986301-9986365,9985676-9985778,9985448-9985576,9985129-9985336,9984862-9984948,9984512-9984735	AT4G17990.1  CDS  gene_syn T6K21.170, T6K21_170  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17700.1); Has 16 Blast hits to 16 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G17990.1p  transcript_id AT4G17990.1  protein_id AT4G17990.1p  transcript_id AT4G17990.1  
At4g17998	chr4:009989476	0.0	C/9989476-9989613	AT4G17998.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G17998.1p  transcript_id AT4G17998.1  protein_id AT4G17998.1p  transcript_id AT4G17998.1  
At4g18000	chr4:009990023	0.0	C/9990023-9990136,9989753-9989779	AT4G18000.1  CDS  gene_syn T6K21.180, T6K21_180  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G18000.1p  transcript_id AT4G18000.1  protein_id AT4G18000.1p  transcript_id AT4G18000.1  
At4g18010	chr4:009994070	0.0	C/9994070-9994099,9993867-9993972,9993683-9993784,9993422-9993518,9993229-9993333,9992235-9993093,9991959-9992143,9991762-9991870,9991496-9991644,9991194-9991392	AT4G18010.1  CDS  gene_syn AT5PTASE2, INOSITOL POLYPHOSPHATE 5-PHOSPHATASE II, INOSITOL(1,4,5)P3 5-PHOSPHATASE II, IP5PII, MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 2, T6K21.190, T6K21_190  gene AT5PTASE2  function Encodes an inositol polyphosphate 5-phosphatase that appears to have Type I activity. It can dephosphorylate IP3(inositol(1,4,5)P3) and IP4 (inositol(1,3,4,5)P4), but it does not appear to be active against phosphatidylinositol 4,5 bisphosphate. Overexpression of this gene renders plants insensitive to ABA in germination and growth assays.  go_process response to abscisic acid stimulus|GO:0009737|11340187|IMP  go_process seed germination|GO:0009845|17237190|IMP  go_process inositol trisphosphate metabolic process|GO:0032957|11340187|IMP  go_process inositol phosphate dephosphorylation|GO:0046855|11340187|IDA  go_function inositol-polyphosphate 5-phosphatase activity|GO:0004445|11340187|IDA  go_function inositol-polyphosphate 5-phosphatase activity|GO:0004445||ISS  product AT5PTASE2 (MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 2); inositol-polyphosphate 5-phosphatase  note MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 2 (AT5PTASE2); FUNCTIONS IN: inositol-polyphosphate 5-phosphatase activity; INVOLVED IN: inositol trisphosphate metabolic process, inositol phosphate dephosphorylation, response to abscisic acid stimulus, seed germination; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: IP5PI (INOSITOL POLYPHOSPHATE 5-PHOSPHATASE I); inositol trisphosphate phosphatase/ inositol-polyphosphate 5-phosphatase (TAIR:AT1G34120.2); Has 1790 Blast hits to 1390 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 788; Fungi - 404; Plants - 362; Viruses - 0; Other Eukaryotes - 236 (source: NCBI BLink).  protein_id AT4G18010.1p  transcript_id AT4G18010.1  protein_id AT4G18010.1p  transcript_id AT4G18010.1  
At4g18010	chr4:009994070	0.0	C/9994070-9994099,9993867-9993972,9993683-9993784,9993422-9993518,9993229-9993333,9992550-9993093,9992235-9992450,9991959-9992143,9991762-9991870,9991496-9991644,9991194-9991392	AT4G18010.2  CDS  gene_syn AT5PTASE2, INOSITOL POLYPHOSPHATE 5-PHOSPHATASE II, INOSITOL(1,4,5)P3 5-PHOSPHATASE II, IP5PII, MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 2, T6K21.190, T6K21_190  gene AT5PTASE2  function Encodes an inositol polyphosphate 5-phosphatase that appears to have Type I activity. It can dephosphorylate IP3(inositol(1,4,5)P3) and IP4 (inositol(1,3,4,5)P4), but it does not appear to be active against phosphatidylinositol 4,5 bisphosphate. Overexpression of this gene renders plants insensitive to ABA in germination and growth assays.  go_process response to abscisic acid stimulus|GO:0009737|11340187|IMP  go_process seed germination|GO:0009845|17237190|IMP  go_process inositol trisphosphate metabolic process|GO:0032957|11340187|IMP  go_process inositol phosphate dephosphorylation|GO:0046855|11340187|IDA  go_function inositol-polyphosphate 5-phosphatase activity|GO:0004445|11340187|IDA  go_function inositol-polyphosphate 5-phosphatase activity|GO:0004445||ISS  product AT5PTASE2 (MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 2); inositol-polyphosphate 5-phosphatase  note INOSITOL(1,4,5)P3 5-PHOSPHATASE II (IP5PII); FUNCTIONS IN: inositol-polyphosphate 5-phosphatase activity; INVOLVED IN: inositol trisphosphate metabolic process, inositol phosphate dephosphorylation, response to abscisic acid stimulus, seed germination; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: inositol polyphosphate 5-phosphatase, putative (TAIR:AT1G71710.1); Has 1757 Blast hits to 1384 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 782; Fungi - 404; Plants - 333; Viruses - 0; Other Eukaryotes - 238 (source: NCBI BLink).  protein_id AT4G18010.2p  transcript_id AT4G18010.2  protein_id AT4G18010.2p  transcript_id AT4G18010.2  
At4g18020	chr4:010006535	0.0	C/10006535-10006682,10005903-10006052,10005760-10005806,10005601-10005678,10005045-10005515,10004821-10004961,10004482-10004736,10004208-10004273,10003991-10004098	AT4G18020.4  CDS  gene_syn APRR2, PRR2, PSEUDO-RESPONSE REGULATOR 2, T6K21.200, T6K21_200  gene APRR2  function Encodes pseudo-response regulator 2 (APRR2).  go_process circadian rhythm|GO:0007623|11100772|TAS  go_function two-component response regulator activity|GO:0000156||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product APRR2; transcription factor/ two-component response regulator  note APRR2; FUNCTIONS IN: transcription factor activity, two-component response regulator activity; INVOLVED IN: circadian rhythm; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), CheY-like (InterPro:IPR011006), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Signal transduction response regulator, receiver region (InterPro:IPR001789), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: GPRI1 (GBF S PRO-RICH REGION-INTERACTING FACTOR 1); transcription factor/ transcription regulator (TAIR:AT2G20570.1); Has 1464 Blast hits to 1360 proteins in 145 species: Archae - 2; Bacteria - 88; Metazoa - 85; Fungi - 7; Plants - 1120; Viruses - 3; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT4G18020.4p  transcript_id AT4G18020.4  protein_id AT4G18020.4p  transcript_id AT4G18020.4  
At4g18020	chr4:010006535	0.0	C/10006535-10006682,10005903-10006052,10005760-10005806,10005601-10005678,10005045-10005515,10004821-10004961,10004482-10004736,10004208-10004273,10003991-10004098	AT4G18020.5  CDS  gene_syn APRR2, PRR2, PSEUDO-RESPONSE REGULATOR 2, T6K21.200, T6K21_200  gene APRR2  function Encodes pseudo-response regulator 2 (APRR2).  go_process circadian rhythm|GO:0007623|11100772|TAS  go_function two-component response regulator activity|GO:0000156||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product APRR2; transcription factor/ two-component response regulator  note APRR2; FUNCTIONS IN: transcription factor activity, two-component response regulator activity; INVOLVED IN: circadian rhythm; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), CheY-like (InterPro:IPR011006), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Signal transduction response regulator, receiver region (InterPro:IPR001789), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: GPRI1 (GBF S PRO-RICH REGION-INTERACTING FACTOR 1); transcription factor/ transcription regulator (TAIR:AT2G20570.1).  protein_id AT4G18020.5p  transcript_id AT4G18020.5  protein_id AT4G18020.5p  transcript_id AT4G18020.5  
At4g18020	chr4:010006535	0.0	C/10006535-10006682,10005903-10006052,10005760-10005806,10005601-10005678,10005045-10005515,10004821-10004961,10004482-10004736,10004208-10004273,10004024-10004098,10003738-10003914	AT4G18020.1  CDS  gene_syn APRR2, PRR2, PSEUDO-RESPONSE REGULATOR 2, T6K21.200, T6K21_200  gene APRR2  function Encodes pseudo-response regulator 2 (APRR2).  go_process circadian rhythm|GO:0007623|11100772|TAS  go_function two-component response regulator activity|GO:0000156||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product APRR2; transcription factor/ two-component response regulator  note APRR2; FUNCTIONS IN: transcription factor activity, two-component response regulator activity; INVOLVED IN: circadian rhythm; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), CheY-like (InterPro:IPR011006), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Signal transduction response regulator, receiver region (InterPro:IPR001789), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: GPRI1 (GBF S PRO-RICH REGION-INTERACTING FACTOR 1); transcription factor/ transcription regulator (TAIR:AT2G20570.1); Has 1493 Blast hits to 1386 proteins in 152 species: Archae - 2; Bacteria - 88; Metazoa - 109; Fungi - 7; Plants - 1125; Viruses - 3; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT4G18020.1p  transcript_id AT4G18020.1  protein_id AT4G18020.1p  transcript_id AT4G18020.1  
At4g18020	chr4:010006535	0.0	C/10006535-10006682,10005903-10006052,10005760-10005806,10005601-10005678,10005045-10005515,10004821-10004961,10004482-10004736,10004208-10004273,10004024-10004098,10003738-10003914	AT4G18020.2  CDS  gene_syn APRR2, PRR2, PSEUDO-RESPONSE REGULATOR 2, T6K21.200, T6K21_200  gene APRR2  function Encodes pseudo-response regulator 2 (APRR2).  go_process circadian rhythm|GO:0007623|11100772|TAS  go_function two-component response regulator activity|GO:0000156||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product APRR2; transcription factor/ two-component response regulator  note APRR2; FUNCTIONS IN: transcription factor activity, two-component response regulator activity; INVOLVED IN: circadian rhythm; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), CheY-like (InterPro:IPR011006), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Signal transduction response regulator, receiver region (InterPro:IPR001789), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: GPRI1 (GBF S PRO-RICH REGION-INTERACTING FACTOR 1); transcription factor/ transcription regulator (TAIR:AT2G20570.1); Has 1493 Blast hits to 1386 proteins in 152 species: Archae - 2; Bacteria - 88; Metazoa - 109; Fungi - 7; Plants - 1125; Viruses - 3; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT4G18020.2p  transcript_id AT4G18020.2  protein_id AT4G18020.2p  transcript_id AT4G18020.2  
At4g18020	chr4:010006535	0.0	C/10006535-10006682,10005903-10006052,10005760-10005806,10005601-10005678,10005045-10005515,10004821-10004961,10004482-10004736,10004208-10004273,10004024-10004098,10003738-10003914	AT4G18020.3  CDS  gene_syn APRR2, PRR2, PSEUDO-RESPONSE REGULATOR 2, T6K21.200, T6K21_200  gene APRR2  function Encodes pseudo-response regulator 2 (APRR2).  go_process circadian rhythm|GO:0007623|11100772|TAS  go_function two-component response regulator activity|GO:0000156||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product APRR2; transcription factor/ two-component response regulator  note APRR2; FUNCTIONS IN: transcription factor activity, two-component response regulator activity; INVOLVED IN: circadian rhythm; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), CheY-like (InterPro:IPR011006), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Signal transduction response regulator, receiver region (InterPro:IPR001789), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: GPRI1 (GBF S PRO-RICH REGION-INTERACTING FACTOR 1); transcription factor/ transcription regulator (TAIR:AT2G20570.1); Has 1493 Blast hits to 1386 proteins in 152 species: Archae - 2; Bacteria - 88; Metazoa - 109; Fungi - 7; Plants - 1125; Viruses - 3; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT4G18020.3p  transcript_id AT4G18020.3  protein_id AT4G18020.3p  transcript_id AT4G18020.3  
At4g18030	chr4:010014620	0.0	C/10014620-10015267,10014329-10014539,10013571-10014243,10013407-10013484,10012850-10013105	AT4G18030.1  CDS  gene_syn T6K21.210, T6K21_210  go_component plasma membrane|GO:0005886|17151019|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process biological_process|GO:0008150||ND  product dehydration-responsive family protein  note dehydration-responsive family protein; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, plasma membrane, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive family protein (TAIR:AT1G26850.2); Has 542 Blast hits to 528 proteins in 53 species: Archae - 0; Bacteria - 60; Metazoa - 0; Fungi - 0; Plants - 479; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G18030.1p  transcript_id AT4G18030.1  protein_id AT4G18030.1p  transcript_id AT4G18030.1  
At4g18040	chr4:010017853	0.0	C/10017853-10018151,10017244-10017409,10017023-10017148,10016864-10016929,10016724-10016774	AT4G18040.1  CDS  gene_syn ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, AT.EIF4E1, CUCUMOVIRUS MULTIPLICATION 1, CUM1, EIF4E, EUKARYOTIC TRANSLATION INITATION FACTOR 4E, F15J5.10, F15J5_10  gene EIF4E  function eIF4E protein. The cum1 mutation affects the local spreading of CMV within the inoculated leaf, delaying accumulation of cucumber mosaic virus coat protein.  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleolus|GO:0005730|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component cytoplasm|GO:0005737||ISS  go_component cytoplasm|GO:0005737||TAS  go_process translational initiation|GO:0006413||ISS  go_process translational initiation|GO:0006413||TAS  go_process response to virus|GO:0009615|9680977|IMP  go_function RNA cap binding|GO:0000339||TAS  go_function RNA binding|GO:0003723||ISS  go_function translation initiation factor activity|GO:0003743||ISS  go_function protein binding|GO:0005515|11117257|IPI  product EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E); RNA binding / RNA cap binding / protein binding / translation initiation factor  note EUKARYOTIC TRANSLATION INITATION FACTOR 4E (EIF4E); FUNCTIONS IN: protein binding, RNA binding, RNA cap binding, translation initiation factor activity; INVOLVED IN: response to virus, translational initiation; LOCATED IN: nucleolus, nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Eukaryotic translation initiation factor 4E (eIF-4E) (InterPro:IPR001040); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 4E, putative / eIF-4E, putative / eIF4E, putative / mRNA cap-binding protein, putative (TAIR:AT1G29550.1); Has 1336 Blast hits to 1336 proteins in 204 species: Archae - 0; Bacteria - 0; Metazoa - 614; Fungi - 224; Plants - 238; Viruses - 0; Other Eukaryotes - 260 (source: NCBI BLink).  protein_id AT4G18040.1p  transcript_id AT4G18040.1  protein_id AT4G18040.1p  transcript_id AT4G18040.1  
At4g18050	chr4:010022205	0.0	W/10022205-10022429,10022933-10022987,10023066-10023241,10023326-10023547,10023615-10023853,10023934-10024459,10024547-10024820,10024921-10025554,10025681-10025864,10025955-10026221,10026297-10026560,10026636-10027280	AT4G18050.1  CDS  gene_syn F15J5.20, F15J5_20, P-GLYCOPROTEIN 9, PGP9  gene PGP9  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product PGP9 (P-GLYCOPROTEIN 9); ATPase, coupled to transmembrane movement of substances  note P-GLYCOPROTEIN 9 (PGP9); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: integral to membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PGP7 (P-GLYCOPROTEIN 7); ATPase, coupled to transmembrane movement of substances (TAIR:AT5G46540.1); Has 492810 Blast hits to 232016 proteins in 2681 species: Archae - 8739; Bacteria - 331224; Metazoa - 15831; Fungi - 8141; Plants - 4706; Viruses - 30; Other Eukaryotes - 124139 (source: NCBI BLink).  protein_id AT4G18050.1p  transcript_id AT4G18050.1  protein_id AT4G18050.1p  transcript_id AT4G18050.1  
At4g18060	chr4:010029603	0.0	C/10029603-10029662,10029275-10029397,10029082-10029151,10028823-10028977,10028624-10028725,10028344-10028541,10028207-10028269,10028046-10028135,10027884-10027958,10027668-10027787	AT4G18060.1  CDS  gene_syn F15J5.30, F15J5_30  go_function clathrin binding|GO:0030276|11701884|ISS  product clathrin binding  note clathrin binding; FUNCTIONS IN: clathrin binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Neutrophil cytosol factor 2 (InterPro:IPR000108), Src homology-3 domain (InterPro:IPR001452); BEST Arabidopsis thaliana protein match is: SH3 domain-containing protein 2 (SH3P2) (TAIR:AT4G34660.1); Has 2031 Blast hits to 1692 proteins in 137 species: Archae - 0; Bacteria - 6; Metazoa - 1668; Fungi - 93; Plants - 91; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).  protein_id AT4G18060.1p  transcript_id AT4G18060.1  protein_id AT4G18060.1p  transcript_id AT4G18060.1  
At4g18070	chr4:010030839	0.0	W/10030839-10030944,10031569-10032155,10032234-10032329	AT4G18070.1  CDS  gene_syn F15J5.40, F15J5_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29530.1); Has 3028 Blast hits to 1533 proteins in 203 species: Archae - 2; Bacteria - 149; Metazoa - 1243; Fungi - 410; Plants - 97; Viruses - 36; Other Eukaryotes - 1091 (source: NCBI BLink).  protein_id AT4G18070.1p  transcript_id AT4G18070.1  protein_id AT4G18070.1p  transcript_id AT4G18070.1  
At4g18070	chr4:010030839	0.0	W/10030839-10030944,10031569-10032155,10032234-10032329	AT4G18070.3  CDS  gene_syn F15J5.40, F15J5_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29530.1); Has 3028 Blast hits to 1533 proteins in 203 species: Archae - 2; Bacteria - 149; Metazoa - 1243; Fungi - 410; Plants - 97; Viruses - 36; Other Eukaryotes - 1091 (source: NCBI BLink).  protein_id AT4G18070.3p  transcript_id AT4G18070.3  protein_id AT4G18070.3p  transcript_id AT4G18070.3  
At4g18070	chr4:010030839	0.0	W/10030839-10030944,10031569-10032155,10032234-10032329	AT4G18070.4  CDS  gene_syn F15J5.40, F15J5_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29530.1); Has 3028 Blast hits to 1533 proteins in 203 species: Archae - 2; Bacteria - 149; Metazoa - 1243; Fungi - 410; Plants - 97; Viruses - 36; Other Eukaryotes - 1091 (source: NCBI BLink).  protein_id AT4G18070.4p  transcript_id AT4G18070.4  protein_id AT4G18070.4p  transcript_id AT4G18070.4  
At4g18070	chr4:010031186	0.0	W/10031186-10031189,10031569-10032155,10032234-10032329	AT4G18070.2  CDS  gene_syn F15J5.40, F15J5_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29530.1); Has 203 Blast hits to 182 proteins in 56 species: Archae - 2; Bacteria - 10; Metazoa - 67; Fungi - 47; Plants - 34; Viruses - 2; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT4G18070.2p  transcript_id AT4G18070.2  protein_id AT4G18070.2p  transcript_id AT4G18070.2  
At4g18080	chr4:010033210	0.0	C/10033210-10033935	AT4G18080.1  CDS  gene_syn F15J5.50, F15J5_50  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: stem; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27900.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G18080.1p  transcript_id AT4G18080.1  protein_id AT4G18080.1p  transcript_id AT4G18080.1  
At4g18090	chr4:010034011	0.0	C/10034011-10034847	AT4G18090.1  CDS  gene_syn F15J5.60, F15J5_60  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 18 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT4G18090.1p  transcript_id AT4G18090.1  protein_id AT4G18090.1p  transcript_id AT4G18090.1  
At4g18100	chr4:010036386	0.0	C/10036386-10036475,10035715-10036026	AT4G18100.1  CDS  gene_syn F15J5.70, F15J5_70  go_component nucleolus|GO:0005730|15496452|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L32 (RPL32A)  note 60S ribosomal protein L32 (RPL32A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, nucleolus; EXPRESSED IN: callus, pollen tube, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L32e (InterPro:IPR001515), Ribosomal protein L32e, conserved site (InterPro:IPR018263); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L32 (RPL32B) (TAIR:AT5G46430.2); Has 1112 Blast hits to 1112 proteins in 342 species: Archae - 217; Bacteria - 0; Metazoa - 540; Fungi - 96; Plants - 104; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink).  protein_id AT4G18100.1p  transcript_id AT4G18100.1  protein_id AT4G18100.1p  transcript_id AT4G18100.1  
At4g18110	chr4:010037077	0.0	C/10037077-10037718	AT4G18110.1  CDS  gene_syn F15J5.80, F15J5_80  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G54990.1); Has 4635 Blast hits to 4623 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 1521; Fungi - 328; Plants - 1936; Viruses - 15; Other Eukaryotes - 835 (source: NCBI BLink).  protein_id AT4G18110.1p  transcript_id AT4G18110.1  protein_id AT4G18110.1p  transcript_id AT4G18110.1  
At4g18120	chr4:010038878	0.0	W/10038878-10038980,10039057-10039514,10039688-10039759,10039840-10039956,10040068-10040219,10040296-10041174,10041261-10041345,10041434-10041502,10041589-10041762,10041867-10041950	AT4G18120.1  CDS  gene_syn AML3, ARABIDOPSIS MEI2-LIKE 3, F15J5.90, F15J5_90  gene AML3  function A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML3 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. Among mei2-like genes, AML3 is the transcript with highest frequency of alternative splicing. Expression was detected during early embryo development (heart and torpedo stage); no accumulation was detected in vegetative and floral apices, as revealed by in situ hybridization.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component nucleus|GO:0005634|15356386|IDA  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product AML3 (ARABIDOPSIS MEI2-LIKE 3); RNA binding / nucleic acid binding / nucleotide binding  note ARABIDOPSIS MEI2-LIKE 3 (AML3); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), RNA recognition motif 2 (InterPro:IPR007201), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: AML5 (ARABIDOPSIS MEI2-LIKE PROTEIN 5); RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT1G29400.2); Has 2120 Blast hits to 2017 proteins in 213 species: Archae - 8; Bacteria - 106; Metazoa - 1102; Fungi - 227; Plants - 355; Viruses - 0; Other Eukaryotes - 322 (source: NCBI BLink).  protein_id AT4G18120.1p  transcript_id AT4G18120.1  protein_id AT4G18120.1p  transcript_id AT4G18120.1  
At4g18120	chr4:010038878	0.0	W/10038878-10038980,10039057-10039514,10039688-10039759,10039840-10039956,10040068-10040219,10040296-10041174,10041261-10041345,10041434-10041502,10041589-10041762,10041867-10041950	AT4G18120.2  CDS  gene_syn AML3, ARABIDOPSIS MEI2-LIKE 3, F15J5.90, F15J5_90  gene AML3  function A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML3 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. Among mei2-like genes, AML3 is the transcript with highest frequency of alternative splicing. Expression was detected during early embryo development (heart and torpedo stage); no accumulation was detected in vegetative and floral apices, as revealed by in situ hybridization.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component nucleus|GO:0005634|15356386|IDA  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product AML3 (ARABIDOPSIS MEI2-LIKE 3); RNA binding / nucleic acid binding / nucleotide binding  note ARABIDOPSIS MEI2-LIKE 3 (AML3); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), RNA recognition motif 2 (InterPro:IPR007201), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: AML5 (ARABIDOPSIS MEI2-LIKE PROTEIN 5); RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT1G29400.2); Has 2120 Blast hits to 2017 proteins in 213 species: Archae - 8; Bacteria - 106; Metazoa - 1102; Fungi - 227; Plants - 355; Viruses - 0; Other Eukaryotes - 322 (source: NCBI BLink).  protein_id AT4G18120.2p  transcript_id AT4G18120.2  protein_id AT4G18120.2p  transcript_id AT4G18120.2  
At4g18130	chr4:010043956	0.0	C/10043956-10045948,10043041-10043848,10042662-10042955,10042312-10042555	AT4G18130.1  CDS  gene_syn F15J5.100, F15J5_100, PHYE, PHYTOCHROME DEFECTIVE E, PHYTOCHROME E  gene PHYE  function member of Histidine Kinase  go_component membrane|GO:0016020||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process signal transduction|GO:0007165||IEA  go_process sensory perception|GO:0007600||IEA  go_process red, far-red light phototransduction|GO:0009585||IEA  go_process protein-tetrapyrrole linkage|GO:0017006||IEA  go_process peptidyl-histidine phosphorylation|GO:0018106||IEA  go_process protein-chromophore linkage|GO:0018298||IEA  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function protein histidine kinase activity|GO:0004673||ISS  go_function signal transducer activity|GO:0004871||ISS  go_function G-protein coupled photoreceptor activity|GO:0008020||ISS  product PHYE (PHYTOCHROME DEFECTIVE E); G-protein coupled photoreceptor/ protein histidine kinase/ signal transducer  note PHYTOCHROME DEFECTIVE E (PHYE); FUNCTIONS IN: protein histidine kinase activity, G-protein coupled photoreceptor activity, signal transducer activity; INVOLVED IN: in 8 processes; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATP-binding region, ATPase-like (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome A/B/C/D/E (InterPro:IPR012129), Phytochrome (InterPro:IPR001294), Phytochrome chromophore binding site (InterPro:IPR013516), Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region (InterPro:IPR003661), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: PHYB (PHYTOCHROME B); G-protein coupled photoreceptor/ protein histidine kinase/ red or far-red light photoreceptor/ signal transducer (TAIR:AT2G18790.1); Has 15842 Blast hits to 15633 proteins in 2338 species: Archae - 199; Bacteria - 11409; Metazoa - 4; Fungi - 344; Plants - 2883; Viruses - 9; Other Eukaryotes - 994 (source: NCBI BLink).  protein_id AT4G18130.1p  transcript_id AT4G18130.1  protein_id AT4G18130.1p  transcript_id AT4G18130.1  
At4g18140	chr4:010048860	0.0	C/10048860-10049052,10048634-10048774,10048056-10048550,10047639-10047976,10047325-10047469,10046718-10046746	AT4G18140.1  CDS  gene_syn F15J5.110, F15J5_110  go_function phosphatase activity|GO:0016791||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product phosphatase  note phosphatase; FUNCTIONS IN: phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dullard-like phosphatase domain (InterPro:IPR011948), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: NLI interacting factor (NIF) family protein (TAIR:AT5G46410.1); Has 13 Blast hits to 12 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G18140.1p  transcript_id AT4G18140.1  protein_id AT4G18140.1p  transcript_id AT4G18140.1  
At4g18140	chr4:010048860	0.0	C/10048860-10049052,10048634-10048774,10048056-10048550,10047639-10047976,10047325-10047469,10046718-10046746	AT4G18140.2  CDS  gene_syn F15J5.110, F15J5_110  go_function phosphatase activity|GO:0016791||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product phosphatase  note phosphatase; FUNCTIONS IN: phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dullard-like phosphatase domain (InterPro:IPR011948), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: NLI interacting factor (NIF) family protein (TAIR:AT5G46410.1).  protein_id AT4G18140.2p  transcript_id AT4G18140.2  protein_id AT4G18140.2p  transcript_id AT4G18140.2  
At4g18150	chr4:010050211	0.0	W/10050211-10050385,10050739-10050782,10050893-10051004,10051114-10051249,10051339-10051868,10051963-10052304,10052403-10052491,10052597-10052722,10052806-10053231,10053494-10053790	AT4G18150.1  CDS  gene_syn F15J5.120, F15J5_120  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1296 (InterPro:IPR009719); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29350.1); Has 362 Blast hits to 295 proteins in 47 species: Archae - 0; Bacteria - 2; Metazoa - 209; Fungi - 11; Plants - 7; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).  protein_id AT4G18150.1p  transcript_id AT4G18150.1  protein_id AT4G18150.1p  transcript_id AT4G18150.1  
At4g18160	chr4:010055696	0.0	W/10055696-10056852,10057393-10057546	AT4G18160.1  CDS  gene_syn ATKCO6, ATTPK3, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, F15J5.130, F15J5_130, KCO6, TPK3  gene KCO6  function Encodes AtTPK3 (KCO6), a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins.AtTPK3 is targeted to the vacuolar membrane. May form homomeric ion channels in vivo.  go_process potassium ion transport|GO:0006813||IEA  go_component plant-type vacuole membrane|GO:0009705|16984403|IDA  go_function outward rectifier potassium channel activity|GO:0015271||ISS  product KCO6; outward rectifier potassium channel  note KCO6; FUNCTIONS IN: outward rectifier potassium channel activity; INVOLVED IN: potassium ion transport; LOCATED IN: plant-type vacuole membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Potassium channel, two pore-domain (InterPro:IPR003280), EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Ion transport 2 (InterPro:IPR013099); BEST Arabidopsis thaliana protein match is: KCO2 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 2); calcium ion binding / outward rectifier potassium channel (TAIR:AT5G46370.1); Has 3030 Blast hits to 2862 proteins in 611 species: Archae - 75; Bacteria - 1044; Metazoa - 1049; Fungi - 97; Plants - 116; Viruses - 0; Other Eukaryotes - 649 (source: NCBI BLink).  protein_id AT4G18160.1p  transcript_id AT4G18160.1  protein_id AT4G18160.1p  transcript_id AT4G18160.1  
At4g18170	chr4:010061508	0.0	W/10061508-10061938,10062052-10062195,10062310-10062691	AT4G18170.1  CDS  gene_syn AtWRKY28, T9A21.10, T9A21_10, WRKY28  gene WRKY28  function member of WRKY Transcription Factor; Group II-c  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY28; transcription factor  note WRKY28; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: stem, sepal, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY group IIc (InterPro:IPR017396); BEST Arabidopsis thaliana protein match is: WRKY8; transcription factor (TAIR:AT5G46350.1); Has 2037 Blast hits to 1747 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2019; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT4G18170.1p  transcript_id AT4G18170.1  protein_id AT4G18170.1p  transcript_id AT4G18170.1  
At4g18180	chr4:010065626	0.0	W/10065626-10065781,10065884-10066027,10066129-10066293,10066369-10066658,10066744-10066972,10067057-10067317	AT4G18180.1  CDS  gene_syn T9A21.20, T9A21_20  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase (TAIR:AT3G14040.1); Has 2236 Blast hits to 2227 proteins in 272 species: Archae - 2; Bacteria - 305; Metazoa - 8; Fungi - 981; Plants - 875; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT4G18180.1p  transcript_id AT4G18180.1  protein_id AT4G18180.1p  transcript_id AT4G18180.1  
At4g18190	chr4:010067939	0.0	W/10067939-10067990,10068082-10069193	AT4G18190.1  CDS  gene_syn ATPUP6, T9A21.30, T9A21_30  gene ATPUP6  function Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.  go_component membrane|GO:0016020|10662864|TAS  go_process purine transport|GO:0006863|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345||ISS  product ATPUP6; purine transmembrane transporter  note ATPUP6; FUNCTIONS IN: purine transmembrane transporter activity; INVOLVED IN: purine transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: ATPUP10; purine transmembrane transporter (TAIR:AT4G18210.1); Has 219 Blast hits to 212 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 10; Fungi - 2; Plants - 202; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G18190.1p  transcript_id AT4G18190.1  protein_id AT4G18190.1p  transcript_id AT4G18190.1  
At4g18195	chr4:010069718	0.0	W/10069718-10069748,10069821-10070974	AT4G18195.1  CDS  gene_syn ARABIDOPSIS THALIANA PURINE PERMEASE 8, AT4G18200, ATPUP8, PUP8  gene PUP8  function Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.  go_component membrane|GO:0016020|10662864|TAS  go_process purine transport|GO:0006863|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345|10662864|TAS  product PUP8 (ARABIDOPSIS THALIANA PURINE PERMEASE 8); purine transmembrane transporter  note ARABIDOPSIS THALIANA PURINE PERMEASE 8 (PUP8); FUNCTIONS IN: purine transmembrane transporter activity; INVOLVED IN: purine transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: PUP7 (PURINE PERMEASE 7); purine transmembrane transporter (TAIR:AT4G18197.1); Has 304 Blast hits to 297 proteins in 41 species: Archae - 0; Bacteria - 11; Metazoa - 7; Fungi - 30; Plants - 222; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT4G18195.1p  transcript_id AT4G18195.1  protein_id AT4G18195.1p  transcript_id AT4G18195.1  
At4g18197	chr4:010071775	0.0	W/10071775-10071805,10071888-10073029	AT4G18197.1  CDS  gene_syn ARABIDOPSIS THALIANA PURINE PERMEASE 7, AT4G18200, ATPUP7, PEROXIN 17, PEX17, PUP7, PURINE PERMEASE 7  gene PUP7  function Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.  go_component membrane|GO:0016020|10662864|TAS  go_process purine transport|GO:0006863|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345|10662864|TAS  product PUP7 (PURINE PERMEASE 7); purine transmembrane transporter  note PURINE PERMEASE 7 (PUP7); FUNCTIONS IN: purine transmembrane transporter activity; INVOLVED IN: purine transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G18205.1); Has 268 Blast hits to 262 proteins in 33 species: Archae - 0; Bacteria - 14; Metazoa - 2; Fungi - 27; Plants - 212; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT4G18197.1p  transcript_id AT4G18197.1  protein_id AT4G18197.1p  transcript_id AT4G18197.1  
At4g18205	chr4:010073850	0.0	W/10073850-10073880,10073963-10075065	AT4G18205.1  CDS  gene_syn AT4G18200  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: PUP7 (PURINE PERMEASE 7); purine transmembrane transporter (TAIR:AT4G18197.1); Has 282 Blast hits to 276 proteins in 29 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 22; Plants - 229; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT4G18205.1p  transcript_id AT4G18205.1  protein_id AT4G18205.1p  transcript_id AT4G18205.1  
At4g18210	chr4:010076175	0.0	W/10076175-10076205,10076354-10077495	AT4G18210.1  CDS  gene_syn ATPUP10, T9A21.60, T9A21_60  gene ATPUP10  function Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.  go_component membrane|GO:0016020|10662864|TAS  go_process purine transport|GO:0006863|10662864|TAS  go_process response to nematode|GO:0009624|16478044|IEP  go_function purine transmembrane transporter activity|GO:0005345|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345||ISS  product ATPUP10; purine transmembrane transporter  note ATPUP10; FUNCTIONS IN: purine transmembrane transporter activity; INVOLVED IN: purine transport, response to nematode; LOCATED IN: membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: purine permease family protein (TAIR:AT4G18220.1); Has 248 Blast hits to 242 proteins in 24 species: Archae - 2; Bacteria - 12; Metazoa - 7; Fungi - 7; Plants - 209; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT4G18210.1p  transcript_id AT4G18210.1  protein_id AT4G18210.1p  transcript_id AT4G18210.1  
At4g18220	chr4:010078768	0.0	W/10078768-10078798,10079106-10080109	AT4G18220.1  CDS  gene_syn T9A21.70, T9A21_70  go_function purine transmembrane transporter activity|GO:0005345||ISS  product purine permease family protein  note purine permease family protein; FUNCTIONS IN: purine transmembrane transporter activity; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: ATPUP10; purine transmembrane transporter (TAIR:AT4G18210.1); Has 283 Blast hits to 276 proteins in 41 species: Archae - 2; Bacteria - 20; Metazoa - 36; Fungi - 8; Plants - 208; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT4G18220.1p  transcript_id AT4G18220.1  protein_id AT4G18220.1p  transcript_id AT4G18220.1  
At4g18230	chr4:010081530	0.0	C/10081530-10081710,10081296-10081435,10081034-10081177,10080875-10080934,10080521-10080697	AT4G18230.1  CDS  gene_syn T9A21.80, T9A21_80  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligosaccharide biosynthesis protein Alg14 like (InterPro:IPR013969); Has 453 Blast hits to 453 proteins in 176 species: Archae - 4; Bacteria - 199; Metazoa - 76; Fungi - 83; Plants - 28; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT4G18230.1p  transcript_id AT4G18230.1  protein_id AT4G18230.1p  transcript_id AT4G18230.1  
At4g18240	chr4:010082221	0.0	W/10082221-10082375,10082759-10083113,10083208-10083289,10083376-10084399,10084494-10084545,10084670-10084792,10084882-10084957,10085034-10085218,10085310-10085504,10085596-10085667,10085746-10085955,10086038-10086163,10086256-10086405,10086523-10086584,10086659-10086734,10086865-10087044	AT4G18240.1  CDS  gene_syn ATSS4, SSIV, STARCH SYNTHASE 4, T9A21.90, T9A21_90  gene ATSS4  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process starch metabolic process|GO:0005982|17217470|IMP  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product ATSS4; transferase, transferring glycosyl groups  note ATSS4; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: starch metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycogen/starch synthases, ADP-glucose type (InterPro:IPR011835), Starch synthase catalytic region (InterPro:IPR013534), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: ATSS3 (starch synthase 3); starch synthase/ transferase, transferring glycosyl groups (TAIR:AT1G11720.1); Has 43097 Blast hits to 28624 proteins in 2800 species: Archae - 659; Bacteria - 5950; Metazoa - 19529; Fungi - 2719; Plants - 4051; Viruses - 224; Other Eukaryotes - 9965 (source: NCBI BLink).  protein_id AT4G18240.1p  transcript_id AT4G18240.1  protein_id AT4G18240.1p  transcript_id AT4G18240.1  
At4g18250	chr4:010091302	0.0	C/10091302-10091963,10089313-10089981,10088738-10088769,10088602-10088634,10087343-10088508	AT4G18250.1  CDS  gene_syn T9A21.100, T9A21_100  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function transmembrane receptor protein serine/threonine kinase activity|GO:0004675||ISS  go_function kinase activity|GO:0016301||ISS  product receptor serine/threonine kinase, putative  note receptor serine/threonine kinase, putative; FUNCTIONS IN: transmembrane receptor protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, LP.02 two leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: PR5K; kinase/ transmembrane receptor protein serine/threonine kinase (TAIR:AT5G38280.1); Has 86992 Blast hits to 84890 proteins in 3144 species: Archae - 77; Bacteria - 6994; Metazoa - 37954; Fungi - 6743; Plants - 20334; Viruses - 346; Other Eukaryotes - 14544 (source: NCBI BLink).  protein_id AT4G18250.1p  transcript_id AT4G18250.1  protein_id AT4G18250.1p  transcript_id AT4G18250.1  
At4g18255	chr4:010093067	0.0	C/10093067-10093146	AT4G18255.1  tRNA  gene_syn 67121.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: TAG)  transcript_id AT4G18255.1  
At4g18260	chr4:010097182	0.0	C/10097182-10097337,10096847-10097011,10096139-10096287,10095682-10096042,10094673-10094983,10093832-10094155,10093524-10093695	AT4G18260.1  CDS  gene_syn T9A21.110, T9A21_110  go_component membrane|GO:0016020|10080694|ISS  product cytochrome B561-related  note cytochrome B561-related; LOCATED IN: membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593); BEST Arabidopsis thaliana protein match is: membrane protein, putative (TAIR:AT2G30890.1); Has 661 Blast hits to 590 proteins in 118 species: Archae - 0; Bacteria - 5; Metazoa - 109; Fungi - 70; Plants - 217; Viruses - 2; Other Eukaryotes - 258 (source: NCBI BLink).  protein_id AT4G18260.1p  transcript_id AT4G18260.1  protein_id AT4G18260.1p  transcript_id AT4G18260.1  
At4g18270	chr4:010101766	0.0	C/10101766-10101897,10101550-10101606,10101276-10101433,10100533-10100977,10100383-10100447,10099981-10100174,10099636-10099844,10099364-10099546	AT4G18270.1  CDS  gene_syn ATTRANS11, T9A21.120, T9A21_120, TRANSLOCASE I  gene ATTRANS11  function Encodes protein similar to similar to bacterial translocase I (mra Y). Expressed during flower bud development.  go_component membrane|GO:0016020||ISS  go_process protein amino acid glycosylation|GO:0006486||ISS  go_process lipid metabolic process|GO:0006629||ISS  go_function catalytic activity|GO:0003824||ISS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product ATTRANS11; P-P-bond-hydrolysis-driven protein transmembrane transporter/ catalytic  note ATTRANS11; FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity, catalytic activity; INVOLVED IN: protein amino acid glycosylation, lipid metabolic process; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Phospho-N-acetylmuramoyl-pentapeptide transferase (InterPro:IPR003524), Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site (InterPro:IPR018480), Glycosyl transferase, family 4 (InterPro:IPR000715), Glycosyl transferase, family 4, conserved region (InterPro:IPR018481); Has 5901 Blast hits to 5555 proteins in 1342 species: Archae - 34; Bacteria - 3679; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 2162 (source: NCBI BLink).  protein_id AT4G18270.1p  transcript_id AT4G18270.1  protein_id AT4G18270.1p  transcript_id AT4G18270.1  
At4g18280	chr4:010104082	0.0	W/10104082-10104555	AT4G18280.1  CDS  gene_syn T9A21.130, T9A21_130  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich cell wall protein-related  note glycine-rich cell wall protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G18280.1p  transcript_id AT4G18280.1  protein_id AT4G18280.1p  transcript_id AT4G18280.1  
At4g18282	chr4:010107585	0.0	W/10107585-10107749	AT4G18282.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G18282.1p  transcript_id AT4G18282.1  protein_id AT4G18282.1p  transcript_id AT4G18282.1  
At4g18290	chr4:010115418	0.0	W/10115418-10115596,10115694-10115909,10116004-10116159,10116259-10116316,10116406-10116723,10116847-10117086,10117185-10117283,10117375-10117407,10117499-10117684,10117787-10118276,10118359-10118477	AT4G18290.1  CDS  gene_syn KAT2, POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 2, T9A21.140, T9A21_140, VOLTAGE-GATED POTASSIUM CHANNEL 2  gene KAT2  function One of the four members of the Shaker family encoding guard cell potassium inward channels. Critical to stomatal opening induced by blue light. Critical to circadian rhythm of stomatal opening. Involved in plant development in response to high light intensity. Under high light intensity, the mutant plant produced less biomass compared to the wild type.  go_component membrane|GO:0016020||IEA  go_component plasma membrane|GO:0005886||ISS  go_process circadian rhythm|GO:0007623|18367672|IMP  go_process response to high light intensity|GO:0009644|18367672|IMP  go_process stomatal movement|GO:0010118|18367672|IMP  go_function inward rectifier potassium channel activity|GO:0005242|11042178|IDA  go_function inward rectifier potassium channel activity|GO:0005242||ISS  go_function cyclic nucleotide binding|GO:0030551||ISS  product KAT2 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 2); cyclic nucleotide binding / inward rectifier potassium channel  note POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 2 (KAT2); FUNCTIONS IN: cyclic nucleotide binding, inward rectifier potassium channel activity; INVOLVED IN: response to high light intensity, stomatal movement, circadian rhythm; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: KAT1 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 1); cyclic nucleotide binding / inward rectifier potassium channel (TAIR:AT5G46240.1); Has 3921 Blast hits to 3661 proteins in 245 species: Archae - 0; Bacteria - 215; Metazoa - 1484; Fungi - 24; Plants - 584; Viruses - 0; Other Eukaryotes - 1614 (source: NCBI BLink).  protein_id AT4G18290.1p  transcript_id AT4G18290.1  protein_id AT4G18290.1p  transcript_id AT4G18290.1  
At4g18300	chr4:010118852	0.0	W/10118852-10120981	AT4G18300.1  CDS  gene_syn T9A21.150, T9A21_150  go_process biosynthetic process|GO:0009058||IEA  go_function binding|GO:0005488||IEA  go_function transferase activity|GO:0016740||IEA  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_process regulation of translational initiation|GO:0006446||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein  note eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein; FUNCTIONS IN: binding, transferase activity, translation initiation factor activity, nucleotidyltransferase activity; INVOLVED IN: biosynthetic process, regulation of translational initiation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), eIF4-gamma/eIF5/eIF2-epsilon (InterPro:IPR003307), Bacterial transferase hexapeptide repeat (InterPro:IPR001451), Armadillo-type fold (InterPro:IPR016024), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein (TAIR:AT2G34970.1); Has 3684 Blast hits to 3615 proteins in 681 species: Archae - 212; Bacteria - 1176; Metazoa - 930; Fungi - 240; Plants - 188; Viruses - 0; Other Eukaryotes - 938 (source: NCBI BLink).  protein_id AT4G18300.1p  transcript_id AT4G18300.1  protein_id AT4G18300.1p  transcript_id AT4G18300.1  
At4g18310	chr4:010122358	0.0	W/10122358-10122990	AT4G18310.1  CDS  gene_syn T9A21.160, T9A21_160  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G18320.2); Has 12 Blast hits to 12 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G18310.1p  transcript_id AT4G18310.1  protein_id AT4G18310.1p  transcript_id AT4G18310.1  
At4g18320	chr4:010124728	0.0	W/10124728-10124729,10125057-10125978	AT4G18320.1  CDS  gene_syn T9A21.170, T9A21_170  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G18310.1); Has 18 Blast hits to 18 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G18320.1p  transcript_id AT4G18320.1  protein_id AT4G18320.1p  transcript_id AT4G18320.1  
At4g18320	chr4:010125016	0.0	W/10125016-10125978	AT4G18320.2  CDS  gene_syn T9A21.170, T9A21_170  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22400.1).  protein_id AT4G18320.2p  transcript_id AT4G18320.2  protein_id AT4G18320.2p  transcript_id AT4G18320.2  
At4g18330	chr4:010126747	0.0	W/10126747-10126873,10126963-10127137,10127215-10127317,10127401-10127628,10127722-10127940,10128024-10128587	AT4G18330.2  CDS  gene_syn T9A21.180, T9A21_180  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product eukaryotic translation initiation factor 2 subunit 3, putative / eIF2S3, putative / eIF-2-gamma, putative  note eukaryotic translation initiation factor 2 subunit 3, putative / eIF2S3, putative / eIF-2-gamma, putative; FUNCTIONS IN: GTP binding, GTPase activity, translation initiation factor activity; INVOLVED IN: translational initiation; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Initiation factor eIF2 gamma, C-terminal (InterPro:IPR015256), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: EIF2 GAMMA; translation factor, nucleic acid binding / translation initiation factor (TAIR:AT1G04170.1); Has 24418 Blast hits to 24386 proteins in 7312 species: Archae - 425; Bacteria - 10016; Metazoa - 6496; Fungi - 1257; Plants - 865; Viruses - 0; Other Eukaryotes - 5359 (source: NCBI BLink).  protein_id AT4G18330.2p  transcript_id AT4G18330.2  protein_id AT4G18330.2p  transcript_id AT4G18330.2  
At4g18330	chr4:010126747	0.0	W/10126747-10126873,10126963-10127137,10127215-10127317,10127401-10127628,10127722-10127940,10128037-10128039	AT4G18330.1  CDS  gene_syn T9A21.180, T9A21_180  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product eukaryotic translation initiation factor 2 subunit 3, putative / eIF2S3, putative / eIF-2-gamma, putative  note eukaryotic translation initiation factor 2 subunit 3, putative / eIF2S3, putative / eIF-2-gamma, putative; FUNCTIONS IN: GTP binding, GTPase activity, translation initiation factor activity; INVOLVED IN: translational initiation; CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: EIF2 GAMMA; translation factor, nucleic acid binding / translation initiation factor (TAIR:AT1G04170.1); Has 19154 Blast hits to 19125 proteins in 4349 species: Archae - 423; Bacteria - 9253; Metazoa - 3068; Fungi - 1170; Plants - 537; Viruses - 0; Other Eukaryotes - 4703 (source: NCBI BLink).  protein_id AT4G18330.1p  transcript_id AT4G18330.1  protein_id AT4G18330.1p  transcript_id AT4G18330.1  
At4g18335	chr4:010128869	0.0	W/10128869-10129363	AT4G18335.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 5 Blast hits to 5 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G18335.1p  transcript_id AT4G18335.1  protein_id AT4G18335.1p  transcript_id AT4G18335.1  
At4g18340	chr4:010131947	0.0	C/10131947-10132019,10131390-10131726,10130445-10131153,10130245-10130319	AT4G18340.1  CDS  gene_syn T9A21.190, T9A21_190  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT1G30080.1); Has 1397 Blast hits to 1388 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 16; Plants - 1378; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G18340.1p  transcript_id AT4G18340.1  protein_id AT4G18340.1p  transcript_id AT4G18340.1  
At4g18350	chr4:010142672	0.0	W/10142672-10144423	AT4G18350.1  CDS  gene_syn ATNCED2, F28J12.10, F28J12_10, NCED2, NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 2  gene NCED2  function Encodes 9-<i>cis</i>-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene declines during the first 12h of imbibition.  go_component chloroplast thylakoid membrane|GO:0009535|12834401|IDA  go_component chloroplast stroma|GO:0009570|12834401|IDA  go_process abscisic acid biosynthetic process|GO:0009688|12834401|ISS  go_function 9-cis-epoxycarotenoid dioxygenase activity|GO:0045549|11532178|IDA  go_function 9-cis-epoxycarotenoid dioxygenase activity|GO:0045549|12834401|ISS  product NCED2 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 2); 9-cis-epoxycarotenoid dioxygenase  note NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 2 (NCED2); FUNCTIONS IN: 9-cis-epoxycarotenoid dioxygenase activity; INVOLVED IN: abscisic acid biosynthetic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: NCED5 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5); 9-cis-epoxycarotenoid dioxygenase (TAIR:AT1G30100.1); Has 2069 Blast hits to 2051 proteins in 343 species: Archae - 10; Bacteria - 524; Metazoa - 182; Fungi - 110; Plants - 542; Viruses - 0; Other Eukaryotes - 701 (source: NCBI BLink).  protein_id AT4G18350.1p  transcript_id AT4G18350.1  protein_id AT4G18350.1p  transcript_id AT4G18350.1  
At4g18360	chr4:010148250	0.0	C/10148250-10148386,10148032-10148156,10147872-10147918,10147705-10147782,10147506-10147630,10147361-10147427,10147219-10147281,10147051-10147120,10146849-10146949,10146627-10146758	AT4G18360.2  CDS  gene_syn F28J12.20, F28J12_20  go_component peroxisome|GO:0005777|17951448|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function glycolate oxidase activity|GO:0008891||ISS  product (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative  note (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative; FUNCTIONS IN: glycolate oxidase activity, electron carrier activity, oxidoreductase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), FMN-dependent alpha-hydroxy acid dehydrogenase (InterPro:IPR017934), FMN-dependent alpha-hydroxy acid dehydrogenase, active site (InterPro:IPR008259), FMN-dependent dehydrogenase (InterPro:IPR000262); BEST Arabidopsis thaliana protein match is: (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative (TAIR:AT3G14420.2); Has 7498 Blast hits to 7477 proteins in 885 species: Archae - 16; Bacteria - 2519; Metazoa - 295; Fungi - 429; Plants - 158; Viruses - 0; Other Eukaryotes - 4081 (source: NCBI BLink).  protein_id AT4G18360.2p  transcript_id AT4G18360.2  protein_id AT4G18360.2p  transcript_id AT4G18360.2  
At4g18360	chr4:010148250	0.0	C/10148250-10148386,10148032-10148156,10147872-10147918,10147705-10147782,10147506-10147630,10147361-10147427,10147219-10147281,10147051-10147120,10146849-10146949,10146654-10146758,10146141-10146329	AT4G18360.1  CDS  gene_syn F28J12.20, F28J12_20  go_component peroxisome|GO:0005777|17951448|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function FMN binding|GO:0010181||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function glycolate oxidase activity|GO:0008891||ISS  product (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative  note (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative; FUNCTIONS IN: glycolate oxidase activity, electron carrier activity, oxidoreductase activity, FMN binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), FMN-dependent alpha-hydroxy acid dehydrogenase (InterPro:IPR017934), FMN-dependent alpha-hydroxy acid dehydrogenase, active site (InterPro:IPR008259), FMN-dependent dehydrogenase (InterPro:IPR000262), Alpha-hydroxy acid dehydrogenase, FMN-dependent (InterPro:IPR012133); BEST Arabidopsis thaliana protein match is: (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative (TAIR:AT3G14420.2); Has 8473 Blast hits to 8457 proteins in 1042 species: Archae - 101; Bacteria - 2949; Metazoa - 295; Fungi - 423; Plants - 162; Viruses - 0; Other Eukaryotes - 4543 (source: NCBI BLink).  protein_id AT4G18360.1p  transcript_id AT4G18360.1  protein_id AT4G18360.1p  transcript_id AT4G18360.1  
At4g18370	chr4:010149235	0.0	W/10149235-10149522,10149597-10149734,10149820-10149882,10149968-10150057,10150134-10150256,10150352-10150439,10150773-10150847,10150945-10151051	AT4G18370.1  CDS  gene_syn DEG5, DEGP PROTEASE 5, DEGP5, F28J12.30, F28J12_30, HHOA, PROTEASE HHOA PRECUSOR  gene DEG5  function Encodes DEG5. Forms a hexamer with DEG8 in the thylakoid lumen. Involved in the cleavage of photodamaged D2 protein of photosystem II (PSII).  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_function catalytic activity|GO:0003824||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  go_component chloroplast thylakoid lumen|GO:0009543|17449806|IDA  go_process proteolysis|GO:0006508||ISS  go_process photosystem II repair|GO:0010206|17449806|IMP  go_function serine-type peptidase activity|GO:0008236||ISS  product DEG5 (DEGP PROTEASE 5); catalytic/ serine-type endopeptidase/ serine-type peptidase  note DEGP PROTEASE 5 (DEG5); FUNCTIONS IN: serine-type peptidase activity, catalytic activity, serine-type endopeptidase activity; INVOLVED IN: photosystem II repair, proteolysis; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase, trypsin-like serine and cysteine (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1 and S6, chymotrypsin/Hap (InterPro:IPR001254); BEST Arabidopsis thaliana protein match is: DEGP1 (DegP protease 1); serine-type endopeptidase/ serine-type peptidase (TAIR:AT3G27925.1); Has 10276 Blast hits to 10276 proteins in 1400 species: Archae - 52; Bacteria - 5737; Metazoa - 244; Fungi - 80; Plants - 163; Viruses - 2; Other Eukaryotes - 3998 (source: NCBI BLink).  protein_id AT4G18370.1p  transcript_id AT4G18370.1  protein_id AT4G18370.1p  transcript_id AT4G18370.1  
At4g18372	chr4:010151349	0.0	C/10151349-10151687	AT4G18372.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product small nuclear ribonucleoprotein-related / snRNP-related  note small nuclear ribonucleoprotein-related / snRNP-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); Has 199 Blast hits to 199 proteins in 64 species: Archae - 0; Bacteria - 0; Metazoa - 146; Fungi - 19; Plants - 18; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT4G18372.1p  transcript_id AT4G18372.1  protein_id AT4G18372.1p  transcript_id AT4G18372.1  
At4g18375	chr4:010152825	0.0	W/10152825-10153409,10153490-10154005,10154088-10154306,10154377-10154601,10154683-10154729,10154805-10154901,10154994-10155125	AT4G18375.2  CDS  gene_syn F28J12.2, F28J12_2  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product KH domain-containing protein  note KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT5G46190.1); Has 4450 Blast hits to 2030 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 3475; Fungi - 362; Plants - 485; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).  protein_id AT4G18375.2p  transcript_id AT4G18375.2  protein_id AT4G18375.2p  transcript_id AT4G18375.2  
At4g18375	chr4:010152825	0.0	W/10152825-10153409,10153490-10154005,10154088-10154306,10154377-10154601,10154683-10154729,10154830-10154836	AT4G18375.1  CDS  gene_syn F28J12.2, F28J12_2  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product KH domain-containing protein  note KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT5G46190.1); Has 3801 Blast hits to 1792 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 2930; Fungi - 302; Plants - 460; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).  protein_id AT4G18375.1p  transcript_id AT4G18375.1  protein_id AT4G18375.1p  transcript_id AT4G18375.1  
At4g18380	chr4:010157957	0.0	W/10157957-10159099	AT4G18380.1  CDS  gene_syn F28J12.40, F28J12_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G46170.1); Has 87 Blast hits to 86 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G18380.1p  transcript_id AT4G18380.1  protein_id AT4G18380.1p  transcript_id AT4G18380.1  
At4g18390	chr4:010163212	0.0	C/10163212-10164309	AT4G18390.1  CDS  gene_syn F28J12.50, F28J12_50  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product TCP family transcription factor, putative  note TCP family transcription factor, putative; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), CYC/TB1, R domain (InterPro:IPR017888), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); transcription factor (TAIR:AT1G30210.2); Has 1950 Blast hits to 1632 proteins in 341 species: Archae - 0; Bacteria - 6; Metazoa - 171; Fungi - 12; Plants - 1425; Viruses - 0; Other Eukaryotes - 336 (source: NCBI BLink).  protein_id AT4G18390.1p  transcript_id AT4G18390.1  protein_id AT4G18390.1p  transcript_id AT4G18390.1  
At4g18390	chr4:010163212	0.0	C/10163212-10164309	AT4G18390.2  CDS  gene_syn F28J12.50, F28J12_50  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product TCP family transcription factor, putative  note TCP family transcription factor, putative; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), CYC/TB1, R domain (InterPro:IPR017888), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); transcription factor (TAIR:AT1G30210.2); Has 1950 Blast hits to 1632 proteins in 341 species: Archae - 0; Bacteria - 6; Metazoa - 171; Fungi - 12; Plants - 1425; Viruses - 0; Other Eukaryotes - 336 (source: NCBI BLink).  protein_id AT4G18390.2p  transcript_id AT4G18390.2  protein_id AT4G18390.2p  transcript_id AT4G18390.2  
At4g18395	chr4:010169475	0.0	W/10169475-10169834	AT4G18395.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G18395.1p  transcript_id AT4G18395.1  protein_id AT4G18395.1p  transcript_id AT4G18395.1  
At4g18400	chr4:010171095	0.0	C/10171095-10171221,10170480-10170592,10170024-10170107	AT4G18400.1  CDS  gene_syn F28J12.60, F28J12_60  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 21 Blast hits to 21 proteins in 9 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 2; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G18400.1p  transcript_id AT4G18400.1  protein_id AT4G18400.1p  transcript_id AT4G18400.1  
At4g18410	chr4:010171927	0.0	W/10171927-10174176	AT4G18410.1  mRNA_TE_gene  pseudo  gene_syn F28J12.70, F28J12_70  note Transposable element gene, Mutator-like transposase family, has a 8.7e-30 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At4g18420	chr4:010174411	0.0	C/10174411-10174960	AT4G18420.1  mRNA_TE_gene  pseudo  gene_syn F28J12.80, F28J12_80  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42810.1); similar to hypothetical protein 26.t00076 [Brassica oleracea] (GB:ABD65021.1)  
At4g18422	chr4:010176264	0.0	C/10176264-10176530	AT4G18422.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT4G18422.1p  transcript_id AT4G18422.1  protein_id AT4G18422.1p  transcript_id AT4G18422.1  
At4g18425	chr4:010181421	0.0	C/10181421-10182062	AT4G18425.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF679 (InterPro:IPR007770); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46090.1); Has 153 Blast hits to 146 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G18425.1p  transcript_id AT4G18425.1  protein_id AT4G18425.1p  transcript_id AT4G18425.1  
At4g18430	chr4:010185003	0.0	C/10185003-10185223,10183903-10184335	AT4G18430.1  CDS  gene_syn Arabidopsis Rab GTPase homolog A1e, AtRABA1e, F28J12.90, F28J12_90  gene AtRABA1e  go_component plasma membrane|GO:0005886|17317660|IDA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product AtRABA1e (Arabidopsis Rab GTPase homolog A1e); GTP binding  note Arabidopsis Rab GTPase homolog A1e (AtRABA1e); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: AtRABA1f (Arabidopsis Rab GTPase homolog A1f); GTP binding (TAIR:AT5G60860.1); Has 22382 Blast hits to 22341 proteins in 612 species: Archae - 21; Bacteria - 99; Metazoa - 12511; Fungi - 2860; Plants - 1871; Viruses - 19; Other Eukaryotes - 5001 (source: NCBI BLink).  protein_id AT4G18430.1p  transcript_id AT4G18430.1  protein_id AT4G18430.1p  transcript_id AT4G18430.1  
At4g18440	chr4:010188647	0.0	C/10188647-10188832,10188407-10188559,10188044-10188259,10187768-10187950,10187447-10187668,10187242-10187358,10187009-10187152,10186826-10186927,10186692-10186760,10186385-10186603	AT4G18440.1  CDS  gene_syn F28J12.100, F28J12_100  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process IMP biosynthetic process|GO:0006188||IEA  go_process purine base biosynthetic process|GO:0009113||IEA  go_process purine ribonucleotide biosynthetic process|GO:0009152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity|GO:0004018||IEA  go_function N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity|GO:0004018||ISS  product adenylosuccinate lyase, putative / adenylosuccinase, putative  note adenylosuccinate lyase, putative / adenylosuccinase, putative; FUNCTIONS IN: N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, catalytic activity; INVOLVED IN: purine ribonucleotide biosynthetic process, purine base biosynthetic process, IMP biosynthetic process; LOCATED IN: chloroplast, chloroplast stroma; CONTAINS InterPro DOMAIN/s: Adenylosuccinate lyase C-terminal (InterPro:IPR013539), L-Aspartase-like (InterPro:IPR008948), Adenylosuccinate lyase (InterPro:IPR004769), Fumarate lyase (InterPro:IPR000362); BEST Arabidopsis thaliana protein match is: adenylosuccinate lyase, putative / adenylosuccinase, putative (TAIR:AT1G36280.1); Has 8163 Blast hits to 8161 proteins in 1479 species: Archae - 154; Bacteria - 4036; Metazoa - 215; Fungi - 196; Plants - 51; Viruses - 0; Other Eukaryotes - 3511 (source: NCBI BLink).  protein_id AT4G18440.1p  transcript_id AT4G18440.1  protein_id AT4G18440.1p  transcript_id AT4G18440.1  
At4g18450	chr4:010190250	0.0	C/10190250-10191161	AT4G18450.1  CDS  gene_syn F28J12.110, F28J12_110  function encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.  go_process regulation of transcription, DNA-dependent|GO:0006355|10715325|TAS  go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS  go_process response to chitin|GO:0010200|17722694|IEP  go_function DNA binding|GO:0003677|10715325|TAS  go_function transcription factor activity|GO:0003700|10715325|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9687012|TAS  go_function transcription activator activity|GO:0016563|10715325|TAS  product ethylene-responsive factor, putative  note ethylene-responsive factor, putative; FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: ethylene mediated signaling pathway, response to chitin, regulation of transcription, DNA-dependent; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ATERF15 (Ethylene-responsive element binding factor 15); DNA binding / transcription activator/ transcription factor (TAIR:AT2G31230.1); Has 3630 Blast hits to 3566 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3622; Viruses - 2; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G18450.1p  transcript_id AT4G18450.1  protein_id AT4G18450.1p  transcript_id AT4G18450.1  
At4g18470	chr4:010192984	0.0	W/10192984-10193116,10193191-10193257,10193352-10193445,10193537-10193593,10193689-10193758,10193843-10193907,10194003-10194084,10194178-10194227,10194306-10194449,10194527-10194597,10194663-10194732,10194817-10194882,10194999-10195157,10195239-10195336,10195439-10195511	AT4G18470.1  CDS  gene_syn F28J12.3, F28J12_3, SNI1, SUPPRESSOR OF NPR1-1, INDUCIBLE 1  gene SNI1  function Negative regulator of systemic acquired resistance (SAR), repressor of pathogenesis-related PR gene expression which is removed by NPR1 upon induction of SAR. Encodes leucine-rich nuclear protein. Conserved in plants, with putative orthologs found in several plant species. Many NPR1-dependent PR gene are specifically derepressed in the sni1 mutant. The structural similarity of SNI1 to Armadillo repeat proteins implies that SNI1 may form a scaffold for interaction with proteins that modulate transcription. Histone modification may be involved in SNI1-mediated repression of PR genes.  go_component nucleus|GO:0005634|10458608|IDA  go_process systemic acquired resistance|GO:0009627|10339621|TAS  go_process negative regulation of systemic acquired resistance|GO:0010113|10458608|IMP  go_process somatic cell DNA recombination|GO:0016444|17360504|IMP  go_process histone modification|GO:0016570|16766691|IMP  go_function transcription repressor activity|GO:0016564|16766691|IDA  product SNI1; transcription repressor  note SNI1; FUNCTIONS IN: transcription repressor activity; INVOLVED IN: systemic acquired resistance, negative regulation of systemic acquired resistance, somatic cell DNA recombination, histone modification; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G18470.1p  transcript_id AT4G18470.1  protein_id AT4G18470.1p  transcript_id AT4G18470.1  
At4g18460	chr4:010196546	0.0	C/10196546-10196679,10196395-10196461,10196291-10196321,10196026-10196166,10195907-10195932,10195763-10195825	AT4G18460.1  CDS  go_component cytoplasm|GO:0005737||IEA  go_process D-amino acid catabolic process|GO:0019478||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_component cytoplasm|GO:0005737||ISS  go_process D-amino acid catabolic process|GO:0019478||ISS  go_function hydrolase activity, acting on ester bonds|GO:0016788||ISS  product D-Tyr-tRNA(Tyr) deacylase family protein  note D-Tyr-tRNA(Tyr) deacylase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds; INVOLVED IN: D-amino acid catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-tyrosyl-tRNA(Tyr) deacylase (InterPro:IPR003732); Has 3035 Blast hits to 3034 proteins in 1108 species: Archae - 3; Bacteria - 2050; Metazoa - 120; Fungi - 93; Plants - 20; Viruses - 0; Other Eukaryotes - 749 (source: NCBI BLink).  protein_id AT4G18460.1p  transcript_id AT4G18460.1  protein_id AT4G18460.1p  transcript_id AT4G18460.1  
At4g18465	chr4:010197056	0.0	W/10197056-10197159,10197236-10197380,10197703-10197777,10197896-10197985,10198076-10198155,10198241-10198337,10198381-10198466,10198568-10198637,10198734-10198829,10198932-10199037,10199132-10199178,10199279-10199362,10199485-10199538,10199638-10199738,10199834-10199924,10200111-10200275,10200380-10200469,10200629-10200700,10200787-10200885,10200964-10201050,10201119-10201172,10201268-10201344,10201467-10201611	AT4G18465.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA helicase activity|GO:0003724||ISS  product RNA helicase, putative  note RNA helicase, putative; FUNCTIONS IN: RNA helicase activity, helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated region (InterPro:IPR007502), Region of unknown function DUF1605 (InterPro:IPR011709), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ESP3 (ENHANCED SILENCING PHENOTYPE 3); ATP binding / ATP-dependent RNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding (TAIR:AT1G32490.1); Has 7224 Blast hits to 6791 proteins in 1024 species: Archae - 6; Bacteria - 1974; Metazoa - 1905; Fungi - 796; Plants - 374; Viruses - 693; Other Eukaryotes - 1476 (source: NCBI BLink).  protein_id AT4G18465.1p  transcript_id AT4G18465.1  protein_id AT4G18465.1p  transcript_id AT4G18465.1  
At4g18480	chr4:010203259	0.0	C/10203259-10203361,10203062-10203177,10201897-10202952	AT4G18480.1  CDS  gene_syn CH-42, CH42, CHL11, CHLI-1, CHLI1, CHLORINA 42, F28J12.140, F28J12_140, PROTOPORPHYRIN-IX MG-CHELATASE  gene CHLI1  function Encodes the CHLI subunit of magnesium chelatase which is required for chlorophyll biosynthesis. All four cysteine residues of the protein form two disulfide bonds (Cys102-Cys193 and Cys354-Cys396) under oxidized conditions but are fully reduced by reduction. It was suggested that the redox state of CHLI is regulated in vivo by the change of the redox environment in the chloroplasts probably via the Trx system.  go_component cell wall|GO:0005618|16287169|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast|GO:0009507|2158442|IDA  go_component chloroplast stroma|GO:0009570|11842180|IDA  go_component magnesium chelatase complex|GO:0010007|11842180|TAS  go_process chlorophyll biosynthetic process|GO:0015995|11842180|TAS  go_process chlorophyll biosynthetic process|GO:0015995|7575622|TAS  go_function magnesium chelatase activity|GO:0016851|11842180|NAS  go_function magnesium chelatase activity|GO:0016851||ISS  go_function ATPase activity|GO:0016887|17472958|IDA  product CHLI1; ATPase/ magnesium chelatase  note CHLI1; FUNCTIONS IN: magnesium chelatase activity, ATPase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: magnesium chelatase complex, cell wall, chloroplast, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Magnesium chelatase, ChlI subunit (InterPro:IPR000523), Magnesium chelatase, ATPase subunit I (InterPro:IPR011775); BEST Arabidopsis thaliana protein match is: CHLI2 (MAGNESIUM CHELATASE I2); ATPase/ magnesium chelatase (TAIR:AT5G45930.1); Has 4212 Blast hits to 4212 proteins in 892 species: Archae - 176; Bacteria - 2874; Metazoa - 2; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 1033 (source: NCBI BLink).  protein_id AT4G18480.1p  transcript_id AT4G18480.1  protein_id AT4G18480.1p  transcript_id AT4G18480.1  
At4g18490	chr4:010204388	0.0	W/10204388-10204445,10204757-10204871,10205040-10205219,10205310-10206167,10206260-10206445,10206726-10206860,10207020-10207169,10207665-10207763,10207812-10208019,10208072-10208197	AT4G18490.1  CDS  gene_syn F28J12.150, F28J12_150  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, shoot, embryo, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; Has 668 Blast hits to 502 proteins in 121 species: Archae - 2; Bacteria - 105; Metazoa - 262; Fungi - 61; Plants - 24; Viruses - 0; Other Eukaryotes - 214 (source: NCBI BLink).  protein_id AT4G18490.1p  transcript_id AT4G18490.1  protein_id AT4G18490.1p  transcript_id AT4G18490.1  
At4g18490	chr4:010204388	0.0	W/10204388-10204445,10204763-10204871,10205040-10205219,10205310-10206167,10206260-10206445,10206726-10206860,10207020-10207169,10207665-10207763,10207812-10208019,10208072-10208197	AT4G18490.2  CDS  gene_syn F28J12.150, F28J12_150  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, shoot, embryo, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; Has 623 Blast hits to 506 proteins in 117 species: Archae - 2; Bacteria - 114; Metazoa - 237; Fungi - 59; Plants - 24; Viruses - 0; Other Eukaryotes - 187 (source: NCBI BLink).  protein_id AT4G18490.2p  transcript_id AT4G18490.2  protein_id AT4G18490.2p  transcript_id AT4G18490.2  
At4g18501	chr4:010209311	0.0	W/10209311-10209640	AT4G18501.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G18501.1p  transcript_id AT4G18501.1  protein_id AT4G18501.1p  transcript_id AT4G18501.1  
At4g18500	chr4:010209363	0.0	C/10209363-10209411,10209148-10209299	AT4G18500.1  CDS  gene_syn F28J12.160, F28J12_160  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G18500.1p  transcript_id AT4G18500.1  protein_id AT4G18500.1p  transcript_id AT4G18500.1  
At4g18510	chr4:010212092	0.0	W/10212092-10212319	AT4G18510.1  CDS  gene_syn CLAVATA3/ESR-RELATED, CLE2, F28J12.170, F28J12_170  gene CLE2  function CLE2, putative ligand, member of large gene family homologous to Clavata3  go_component apoplast|GO:0048046|11457943|RCA  go_process signal transduction|GO:0007165||ISS  go_function receptor binding|GO:0005102||ISS  go_function protein binding|GO:0005515|11457943|ISS  product CLE2 (CLAVATA3/ESR-RELATED); protein binding / receptor binding  note CLAVATA3/ESR-RELATED (CLE2); FUNCTIONS IN: protein binding, receptor binding; INVOLVED IN: signal transduction; LOCATED IN: apoplast; EXPRESSED IN: root; Has 6 Blast hits to 6 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G18510.1p  transcript_id AT4G18510.1  protein_id AT4G18510.1p  transcript_id AT4G18510.1  
At4g18520	chr4:010215250	0.0	C/10215250-10217103	AT4G18520.1  CDS  gene_syn F28J12.180, F28J12_180  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G39530.1); Has 16698 Blast hits to 4567 proteins in 114 species: Archae - 0; Bacteria - 4; Metazoa - 97; Fungi - 32; Plants - 16266; Viruses - 0; Other Eukaryotes - 299 (source: NCBI BLink).  protein_id AT4G18520.1p  transcript_id AT4G18520.1  protein_id AT4G18520.1p  transcript_id AT4G18520.1  
At4g18530	chr4:010217749	0.0	W/10217749-10217757,10218158-10218262,10218480-10218563,10218646-10218750,10218844-10218927,10219012-10219130,10219213-10219314,10219388-10219570,10219658-10219724,10219801-10219854,10219941-10220066,10220154-10220285	AT4G18530.1  CDS  gene_syn F28J12.190, F28J12_190  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12840.2); Has 173 Blast hits to 173 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 169; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G18530.1p  transcript_id AT4G18530.1  protein_id AT4G18530.1p  transcript_id AT4G18530.1  
At4g18540	chr4:010222179	0.0	C/10222179-10223028,10221664-10222094,10221476-10221546,10221203-10221413	AT4G18540.1  CDS  gene_syn F28J12.200, F28J12_200  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: embryo, sepal, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage; Has 134 Blast hits to 131 proteins in 38 species: Archae - 0; Bacteria - 7; Metazoa - 2; Fungi - 107; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G18540.1p  transcript_id AT4G18540.1  protein_id AT4G18540.1p  transcript_id AT4G18540.1  
At4g18550	chr4:010226614	0.0	C/10226614-10226862,10225789-10226172,10225476-10225705,10225006-10225402	AT4G18550.1  CDS  gene_syn F28J12.210, F28J12_210  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_component cellular_component|GO:0005575||ND  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product lipase class 3 family protein  note lipase class 3 family protein; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: lipase class 3 family protein (TAIR:AT1G06250.1); Has 749 Blast hits to 742 proteins in 159 species: Archae - 0; Bacteria - 108; Metazoa - 8; Fungi - 179; Plants - 299; Viruses - 1; Other Eukaryotes - 154 (source: NCBI BLink).  protein_id AT4G18550.1p  transcript_id AT4G18550.1  protein_id AT4G18550.1p  transcript_id AT4G18550.1  
At4g18570	chr4:010231439	0.0	W/10231439-10232671,10232842-10232973,10233058-10233239,10233325-10233436,10234172-10234309,10234403-10234534	AT4G18570.1  CDS  gene_syn F28J12.8  product proline-rich family protein  note proline-rich family protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1) (TAIR:AT3G25690.1); Has 38999 Blast hits to 20613 proteins in 981 species: Archae - 88; Bacteria - 4167; Metazoa - 15425; Fungi - 4272; Plants - 8442; Viruses - 1480; Other Eukaryotes - 5125 (source: NCBI BLink).  protein_id AT4G18570.1p  transcript_id AT4G18570.1  protein_id AT4G18570.1p  transcript_id AT4G18570.1  
At4g18580	chr4:010235458	0.0	C/10235458-10235524,10235244-10235348,10235038-10235126,10234853-10234939	AT4G18580.1  CDS  gene_syn F28J12.240, F28J12_240  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G18580.1p  transcript_id AT4G18580.1  protein_id AT4G18580.1p  transcript_id AT4G18580.1  
At4g18580	chr4:010235458	0.0	C/10235458-10235524,10235244-10235348,10235038-10235126,10234853-10234939	AT4G18580.2  CDS  gene_syn F28J12.240, F28J12_240  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G18580.2p  transcript_id AT4G18580.2  protein_id AT4G18580.2p  transcript_id AT4G18580.2  
At4g18590	chr4:010236524	0.0	W/10236524-10236779,10236876-10236940	AT4G18590.1  CDS  gene_syn F28J12.250, F28J12_250  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Replication factor A protein 3 (InterPro:IPR013970), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52630.2); Has 58 Blast hits to 58 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 2; Plants - 26; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G18590.1p  transcript_id AT4G18590.1  protein_id AT4G18590.1p  transcript_id AT4G18590.1  
At4g18593	chr4:010238154	0.0	W/10238154-10238397,10238514-10238698	AT4G18593.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product dual specificity protein phosphatase-related  note dual specificity protein phosphatase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 272 Blast hits to 272 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 89; Fungi - 76; Plants - 42; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT4G18593.1p  transcript_id AT4G18593.1  protein_id AT4G18593.1p  transcript_id AT4G18593.1  
At4g18596	chr4:010239114	0.0	W/10239114-10239285,10239382-10239728	AT4G18596.1  CDS  go_component extracellular space|GO:0005615||IEA  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pollen Ole e 1 allergen and extensin family protein  note pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: extracellular space, endomembrane system; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen and extensin (InterPro:IPR006041), Allergen Ole e 1, conserved site (InterPro:IPR006040); BEST Arabidopsis thaliana protein match is: pollen Ole e 1 allergen and extensin family protein (TAIR:AT5G45880.1); Has 212 Blast hits to 212 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 212; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G18596.1p  transcript_id AT4G18596.1  protein_id AT4G18596.1p  transcript_id AT4G18596.1  
At4g18600	chr4:010247212	0.0	C/10247212-10247372,10246435-10246598,10246099-10246222,10245876-10246008,10245572-10245639,10240111-10245477,10239947-10240016	AT4G18600.1  CDS  gene_syn ATSCAR-LIKE, F28J12.260, F28J12_260, SCARL, WASP (WISKOTT-ALDRICH SYNDROME PROTEIN)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 5, WAVE5  gene WAVE5  function Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515|17267444|IPI  product WAVE5; protein binding  note WAVE5; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: WAVE2 (TAIR:AT1G29170.3); Has 5264 Blast hits to 3010 proteins in 379 species: Archae - 29; Bacteria - 670; Metazoa - 2209; Fungi - 692; Plants - 179; Viruses - 13; Other Eukaryotes - 1472 (source: NCBI BLink).  protein_id AT4G18600.1p  transcript_id AT4G18600.1  protein_id AT4G18600.1p  transcript_id AT4G18600.1  
At4g18610	chr4:010250794	0.0	W/10250794-10251369	AT4G18610.1  CDS  gene_syn F28A21.20, F28A21_20, LIGHT SENSITIVE HYPOCOTYLS 9, LSH9  gene LSH9  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product LSH9 (LIGHT SENSITIVE HYPOCOTYLS 9)  note LIGHT SENSITIVE HYPOCOTYLS 9 (LSH9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10) (TAIR:AT2G42610.2); Has 181 Blast hits to 181 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G18610.1p  transcript_id AT4G18610.1  protein_id AT4G18610.1p  transcript_id AT4G18610.1  
At4g18620	chr4:010254359	0.0	W/10254359-10254853	AT4G18620.1  CDS  gene_syn F28A21.30, F28A21_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: Bet v I allergen family protein (TAIR:AT5G45870.1); Has 190 Blast hits to 190 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 178; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G18620.1p  transcript_id AT4G18620.1  protein_id AT4G18620.1p  transcript_id AT4G18620.1  
At4g18630	chr4:010257178	0.0	W/10257178-10258578,10258696-10258734	AT4G18630.1  CDS  gene_syn F28A21.40, F28A21_40  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45850.1); Has 70 Blast hits to 65 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 21; Fungi - 3; Plants - 39; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT4G18630.1p  transcript_id AT4G18630.1  protein_id AT4G18630.1p  transcript_id AT4G18630.1  
At4g18640	chr4:010260481	0.0	W/10260481-10260568,10260659-10260794,10260884-10260955,10261044-10261187,10261286-10261429,10261517-10261611,10261701-10262129,10262213-10262403,10262484-10262616,10262697-10262851,10263035-10263226,10263320-10263577	AT4G18640.1  CDS  gene_syn F28A21.50, F28A21_50, MRH1, morphogenesis of root hair 1  gene MRH1  function Required for root hair elongation during tip growth.  go_component endomembrane system|GO:0012505||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_process root hair cell differentiation|GO:0048765|16367956|IMP  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product MRH1 (morphogenesis of root hair 1); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note morphogenesis of root hair 1 (MRH1); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation, root hair cell differentiation; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT5G45840.1); Has 45770 Blast hits to 22779 proteins in 752 species: Archae - 14; Bacteria - 772; Metazoa - 5252; Fungi - 336; Plants - 36527; Viruses - 58; Other Eukaryotes - 2811 (source: NCBI BLink).  protein_id AT4G18640.1p  transcript_id AT4G18640.1  protein_id AT4G18640.1p  transcript_id AT4G18640.1  
At4g18650	chr4:010265000	0.0	C/10265000-10265422,10264043-10264318	AT4G18650.1  CDS  gene_syn F28A21.60, F28A21_60  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product transcription factor-related  note transcription factor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14880.2); Has 341 Blast hits to 340 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 339; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G18650.1p  transcript_id AT4G18650.1  protein_id AT4G18650.1p  transcript_id AT4G18650.1  
At4g18660	chr4:010273585	0.0	W/10273585-10274043	AT4G18660.1  CDS  gene_syn F28A21.70, F28A21_70  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G18690.1); Has 66 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G18660.1p  transcript_id AT4G18660.1  protein_id AT4G18660.1p  transcript_id AT4G18660.1  
At4g18670	chr4:010275918	0.0	C/10275918-10278491	AT4G18670.1  CDS  gene_syn F28A21.80, F28A21_80  go_component endomembrane system|GO:0012505||IEA  go_function structural constituent of cell wall|GO:0005199|12644681|ISS  go_function protein binding|GO:0005515|12644681|ISS  go_function protein binding|GO:0005515||ISS  product protein binding / structural constituent of cell wall  note protein binding / structural constituent of cell wall; FUNCTIONS IN: structural constituent of cell wall, protein binding; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Atrophin-1 (InterPro:IPR017993); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / extensin family protein (TAIR:AT3G24480.1); Has 441640 Blast hits to 126554 proteins in 2733 species: Archae - 1162; Bacteria - 71034; Metazoa - 179951; Fungi - 60443; Plants - 63765; Viruses - 11201; Other Eukaryotes - 54084 (source: NCBI BLink).  protein_id AT4G18670.1p  transcript_id AT4G18670.1  protein_id AT4G18670.1p  transcript_id AT4G18670.1  
At4g18680	chr4:010281033	0.0	W/10281033-10281740	AT4G18680.1  CDS  gene_syn F28A21.90, F28A21_90  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G18690.1); Has 239 Blast hits to 238 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 231; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G18680.1p  transcript_id AT4G18680.1  protein_id AT4G18680.1p  transcript_id AT4G18680.1  
At4g18690	chr4:010282788	0.0	W/10282788-10283636	AT4G18690.1  CDS  gene_syn F28A21.100, F28A21_100  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G18680.1); Has 328 Blast hits to 327 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 323; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G18690.1p  transcript_id AT4G18690.1  protein_id AT4G18690.1p  transcript_id AT4G18690.1  
At4g18692	chr4:010284449	0.0	W/10284449-10284667	AT4G18692.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53342.1); Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G18692.1p  transcript_id AT4G18692.1  protein_id AT4G18692.1p  transcript_id AT4G18692.1  
At4g18700	chr4:010289110	0.0	C/10289110-10290579	AT4G18700.1  CDS  gene_syn ATWL4, CBL-INTERACTING PROTEIN KINASE 12, CIPK12, F28A21.110, F28A21_110, SNF1-RELATED PROTEIN KINASE 3.9, SnRK3.9, WL4, WPL4-LIKE 4  gene CIPK12  function Encodes CBL-interacting protein kinase 12 (CIPK12).  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product CIPK12 (CBL-INTERACTING PROTEIN KINASE 12); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note CBL-INTERACTING PROTEIN KINASE 12 (CIPK12); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: signal transduction, protein amino acid phosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CIPK19 (CBL-INTERACTING PROTEIN KINASE 19); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G45810.1); Has 96650 Blast hits to 94988 proteins in 3133 species: Archae - 76; Bacteria - 8781; Metazoa - 41609; Fungi - 8752; Plants - 18395; Viruses - 476; Other Eukaryotes - 18561 (source: NCBI BLink).  protein_id AT4G18700.1p  transcript_id AT4G18700.1  protein_id AT4G18700.1p  transcript_id AT4G18700.1  
At4g18710	chr4:010296474	0.0	W/10296474-10296488,10297078-10297170,10297262-10297594,10297687-10297761,10297855-10297911,10298006-10298146,10298237-10298287,10298368-10298463,10298550-10298633,10298716-10298913	AT4G18710.1  CDS  gene_syn ATSK21, BIN2, BRASSINOSTEROID-INSENSITIVE 2, DWARF 12, DWF12, F28A21.120, F28A21_120, SHAGGY-LIKE KINASE 21, SK21, UCU1, ULTRACURVATA 1  gene BIN2  function ATSK (shaggy-like kinase) family member that encodes an AtSK protein involved in the cross-talk between auxin and brassinosteroid signaling pathways. BR-INSENSITIVE 2 mutant indicated that the BR-insensitive dwarf phenotype was due to a semidominant mutation in the BIN2. BIN2 is not allelic to BRI1. BIN2-mediated phosphorylation appears to promote BZR1 export from the nucleus.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468|12114546|IPI  go_process detection of brassinosteroid stimulus|GO:0009729|11553730|IMP  go_process response to auxin stimulus|GO:0009733|11820813|IMP  go_process brassinosteroid mediated signaling|GO:0009742|11553730|IMP  go_process multidimensional cell growth|GO:0009825|11820813|IMP  go_process leaf morphogenesis|GO:0009965|11820813|IMP  go_process positive regulation of protein export from nucleus|GO:0046827|17873094|IDA  go_function protein kinase activity|GO:0004672|11820813|TAS  go_function glycogen synthase kinase 3 activity|GO:0004696|11847343|ISS  go_function kinase activity|GO:0016301||ISS  product BIN2 (BRASSINOSTEROID-INSENSITIVE 2); glycogen synthase kinase 3/ kinase/ protein kinase  note BRASSINOSTEROID-INSENSITIVE 2 (BIN2); FUNCTIONS IN: protein kinase activity, kinase activity, glycogen synthase kinase 3 activity; INVOLVED IN: in 7 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ASKdZeta (Arabidopsis SHAGGY-related protein kinase dZeta); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT2G30980.1); Has 80401 Blast hits to 79246 proteins in 2642 species: Archae - 37; Bacteria - 6218; Metazoa - 34137; Fungi - 7949; Plants - 15983; Viruses - 367; Other Eukaryotes - 15710 (source: NCBI BLink).  protein_id AT4G18710.1p  transcript_id AT4G18710.1  protein_id AT4G18710.1p  transcript_id AT4G18710.1  
At4g18720	chr4:010299945	0.0	W/10299945-10300587,10301071-10301228	AT4G18720.1  CDS  gene_syn F28A21.130, F28A21_130  go_component nucleus|GO:0005634||IEA  go_process transcription|GO:0006350||IEA  go_function zinc ion binding|GO:0008270||IEA  product transcription elongation factor-related  note transcription elongation factor-related; FUNCTIONS IN: zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription elongation factor S-IIM (InterPro:IPR017890), TFIIS N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), Transcription elongation factor S-II, central region (InterPro:IPR003618); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G42730.1); Has 469 Blast hits to 451 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 323; Fungi - 36; Plants - 95; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT4G18720.1p  transcript_id AT4G18720.1  protein_id AT4G18720.1p  transcript_id AT4G18720.1  
At4g18725	chr4:010302001	0.0	W/10302001-10302073	AT4G18725.1  tRNA  gene_syn 67123.TRNA-GLU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Glu (anticodon: CTC)  transcript_id AT4G18725.1  
At4g18730	chr4:010302238	0.0	W/10302238-10302240,10302320-10302427,10302585-10302627,10302723-10302918,10303008-10303206	AT4G18730.1  CDS  gene_syn RPL16B  gene RPL16B  function encodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root and shoot apical meristems and in lateral root primordia. Expression in lateral root primordia is induced by auxin.  go_component vacuole|GO:0005773|15215502|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_component cytosolic large ribosomal subunit|GO:0022625|7655508|TAS  go_component cytosolic large ribosomal subunit|GO:0022625||ISS  go_process translation|GO:0006412|7655508|TAS  go_process translation|GO:0006412||ISS  go_process cell cycle|GO:0007049|7655508|IEP  go_process lateral root morphogenesis|GO:0010102|7655508|IEP  go_function structural constituent of ribosome|GO:0003735||ISS  product RPL16B; structural constituent of ribosome  note RPL16B; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: lateral root morphogenesis, translation, cell cycle; LOCATED IN: cytosolic large ribosomal subunit, vacuole, membrane; EXPRESSED IN: lateral root primordium, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L5 (InterPro:IPR002132); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L11 (RPL11D) (TAIR:AT5G45775.2); Has 5263 Blast hits to 5263 proteins in 1657 species: Archae - 218; Bacteria - 2825; Metazoa - 209; Fungi - 107; Plants - 188; Viruses - 0; Other Eukaryotes - 1716 (source: NCBI BLink).  protein_id AT4G18730.1p  transcript_id AT4G18730.1  protein_id AT4G18730.1p  transcript_id AT4G18730.1  
At4g18740	chr4:010304389	0.0	C/10304389-10304479,10303915-10304268,10303543-10303835	AT4G18740.1  CDS  gene_syn F28A21.150, F28A21_150  go_process transcription termination|GO:0006353||IEA  go_function transcription termination factor activity|GO:0003715||IEA  product transcription termination factor  note transcription termination factor; FUNCTIONS IN: transcription termination factor activity; INVOLVED IN: transcription termination; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Rho termination factor, N-terminal (InterPro:IPR011112); Has 137 Blast hits to 135 proteins in 48 species: Archae - 0; Bacteria - 14; Metazoa - 40; Fungi - 8; Plants - 37; Viruses - 9; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT4G18740.1p  transcript_id AT4G18740.1  protein_id AT4G18740.1p  transcript_id AT4G18740.1  
At4g18740	chr4:010304389	0.0	C/10304389-10304479,10303915-10304268,10303725-10303835,10303543-10303631	AT4G18740.2  CDS  gene_syn F28A21.150, F28A21_150  product unknown protein  note unknown protein; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; Has 46 Blast hits to 44 proteins in 22 species: Archae - 0; Bacteria - 3; Metazoa - 6; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT4G18740.2p  transcript_id AT4G18740.2  protein_id AT4G18740.2p  transcript_id AT4G18740.2  
At4g18750	chr4:010304850	0.0	W/10304850-10307465	AT4G18750.1  CDS  gene_syn DEFECTIVELY ORGANIZED TRIBUTARIES 4, DOT4, F28A21.160, F28A21_160  gene DOT4  function Encodes a pentatricopeptide (PPR) protein involved in leaf and root development. dot4 mutants have an aberrant midgap venation pattern in juvenile leaves and cotyledons.  go_component chloroplast|GO:0009507||IEA  go_process phloem or xylem histogenesis|GO:0010087|18643975|IMP  go_process leaf vascular tissue pattern formation|GO:0010305|18643975|IMP  go_process cotyledon vascular tissue pattern formation|GO:0010588|18643975|IMP  go_process leaf development|GO:0048366|18643975|IMP  product DOT4 (DEFECTIVELY ORGANIZED TRIBUTARIES 4)  note DEFECTIVELY ORGANIZED TRIBUTARIES 4 (DOT4); INVOLVED IN: cotyledon vascular tissue pattern formation, phloem or xylem histogenesis, leaf development, leaf vascular tissue pattern formation; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G03580.1); Has 18119 Blast hits to 5366 proteins in 181 species: Archae - 0; Bacteria - 10; Metazoa - 203; Fungi - 90; Plants - 17455; Viruses - 0; Other Eukaryotes - 361 (source: NCBI BLink).  protein_id AT4G18750.1p  transcript_id AT4G18750.1  protein_id AT4G18750.1p  transcript_id AT4G18750.1  
At4g18760	chr4:010308163	0.0	C/10308163-10309458	AT4G18760.1  CDS  gene_syn AtRLP51, F28A21.170, F28A21_170, Receptor Like Protein 51  gene AtRLP51  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product AtRLP51 (Receptor Like Protein 51); protein binding  note Receptor Like Protein 51 (AtRLP51); FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP55 (Receptor Like Protein 55); protein binding (TAIR:AT5G45770.1); Has 49381 Blast hits to 18169 proteins in 775 species: Archae - 21; Bacteria - 2325; Metazoa - 12582; Fungi - 717; Plants - 30648; Viruses - 12; Other Eukaryotes - 3076 (source: NCBI BLink).  protein_id AT4G18760.1p  transcript_id AT4G18760.1  protein_id AT4G18760.1p  transcript_id AT4G18760.1  
At4g18770	chr4:010311068	0.0	W/10311068-10311744,10311882-10312008,10312078-10312557	AT4G18770.1  CDS  gene_syn AtMYB98, F28A21.180, F28A21_180, MYB98, myb domain protein 98  gene MYB98  function MYB98 is a member of the R2R3-MYB gene family, the members of which likely encode transcription factors. Within an ovule, MYB98 is expressed exclusively in the synergid cells, and mutations in this gene affect the female gametophyte specifically. myb98 female gametophytes are affected in two unique features of the synergid cell, pollen tube guidance and the filiform apparatus, but are otherwise normal. This suggests that MYB98 controls the development of specific features within the synergid cell during female gametophyte development. MYB98 also is expressed in trichomes and endosperm. Homozygous myb98 mutants exhibit no sporophytic defects, including trichome and endosperm defects.  go_process regulation of transcription, DNA-dependent|GO:0006355|10743663|TAS  go_process embryo sac development|GO:0009553|16214903|IMP  go_process pollen tube guidance|GO:0010183|16214903|IMP  go_process regulation of synergid differentiation|GO:0045697|16214903|IMP  go_function DNA binding|GO:0003677|10743663|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB98 (myb domain protein 98); DNA binding / transcription factor  note myb domain protein 98 (MYB98); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: pollen tube guidance, regulation of synergid differentiation, embryo sac development, regulation of transcription, DNA-dependent; EXPRESSED IN: synergid, endosperm, leaf trichome; EXPRESSED DURING: 2 leaf expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB119 (MYB DOMAIN PROTEIN 119); DNA binding / transcription factor (TAIR:AT5G58850.1); Has 7178 Blast hits to 5941 proteins in 379 species: Archae - 0; Bacteria - 2; Metazoa - 834; Fungi - 533; Plants - 3735; Viruses - 3; Other Eukaryotes - 2071 (source: NCBI BLink).  protein_id AT4G18770.1p  transcript_id AT4G18770.1  protein_id AT4G18770.1p  transcript_id AT4G18770.1  
At4g18780	chr4:010316542	0.0	C/10316542-10316719,10316370-10316449,10316235-10316286,10315975-10316140,10315619-10315891,10315182-10315527,10314948-10315085,10314750-10314875,10314470-10314682,10313944-10314387,10313517-10313870,10312846-10313433	AT4G18780.1  CDS  gene_syn ATCESA8, CELLULOSE SYNTHASE 8, CESA8, F28A21.190, F28A21_190, IRREGULAR XYLEM 1, IRX1, LEAF WILTING 2, LEW2  gene IRX1  function Encodes a member of the cellulose synthase family involved in secondary cell wall biosynthesis. Mutants have abnormal xylem formation, reduced cellulose content, and enhanced drought and osmotic stress tolerance. Mediates resistance towards bacterial pathogens via ABA. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling.  go_component cell wall|GO:0005618|15593128|IDA  go_component plasma membrane|GO:0005886|11148295|TAS  go_process response to osmotic stress|GO:0006970|15998313|IMP  go_process response to water deprivation|GO:0009414|15998313|IMP  go_process secondary cell wall biogenesis|GO:0009834|11148295|IMP  go_process secondary cell wall biogenesis|GO:0009834|9165747|IMP  go_process salicylic acid mediated signaling pathway|GO:0009863|17351116|IGI  go_process jasmonic acid mediated signaling pathway|GO:0009867|17351116|IGI  go_process ethylene mediated signaling pathway|GO:0009873|17351116|IGI  go_process positive regulation of abscisic acid biosynthetic process|GO:0010116|17351116|IGI  go_process cellulose biosynthetic process|GO:0030244|11148295|IMP  go_process cellulose biosynthetic process|GO:0030244|9165747|IMP  go_process defense response to bacterium|GO:0042742|17351116|IMP  go_process defense response to fungus|GO:0050832|17351116|IMP  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759|11148295|IMP  go_function cellulose synthase activity|GO:0016759||ISS  product IRX1 (IRREGULAR XYLEM 1); cellulose synthase/ transferase, transferring glycosyl groups  note IRREGULAR XYLEM 1 (IRX1); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: in 10 processes; LOCATED IN: cell wall, plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: CESA4 (CELLULOSE SYNTHASE A4); cellulose synthase/ transferase, transferring glycosyl groups (TAIR:AT5G44030.1); Has 2171 Blast hits to 1913 proteins in 422 species: Archae - 4; Bacteria - 706; Metazoa - 3; Fungi - 20; Plants - 1374; Viruses - 3; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT4G18780.1p  transcript_id AT4G18780.1  protein_id AT4G18780.1p  transcript_id AT4G18780.1  
At4g18790	chr4:010319083	0.0	C/10319083-10319660,10318818-10318954,10318085-10318737,10317785-10318009	AT4G18790.1  CDS  gene_syn ATNRAMP5, F28A21.200, F28A21_200, NRAMP5  gene NRAMP5  function member of Nramp2 family  go_component membrane|GO:0016020||IEA  go_process cellular metal ion homeostasis|GO:0006875|11500563|NAS  go_process metal ion transport|GO:0030001|11500563|NAS  go_process metal ion transport|GO:0030001||ISS  go_function inorganic anion transmembrane transporter activity|GO:0015103||ISS  go_function metal ion transmembrane transporter activity|GO:0046873|11500563|NAS  go_function metal ion transmembrane transporter activity|GO:0046873||ISS  product NRAMP5; inorganic anion transmembrane transporter/ metal ion transmembrane transporter  note NRAMP5; FUNCTIONS IN: inorganic anion transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: cellular metal ion homeostasis, metal ion transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Natural resistance-associated macrophage protein (InterPro:IPR001046); BEST Arabidopsis thaliana protein match is: NRAMP2; inorganic anion transmembrane transporter/ metal ion transmembrane transporter (TAIR:AT1G47240.1); Has 2867 Blast hits to 2844 proteins in 819 species: Archae - 45; Bacteria - 1873; Metazoa - 310; Fungi - 163; Plants - 195; Viruses - 0; Other Eukaryotes - 281 (source: NCBI BLink).  protein_id AT4G18790.1p  transcript_id AT4G18790.1  protein_id AT4G18790.1p  transcript_id AT4G18790.1  
At4g18800	chr4:010321119	0.0	C/10321119-10321339,10320156-10320579	AT4G18800.1  CDS  gene_syn ARABIDOPSIS RAB GTPASE HOMOLOG A1D, ATHSGBP, ATRAB11B, ATRABA1D, F28A21.210, F28A21_210  gene ATRABA1D  go_component plasma membrane|GO:0005886|17317660|IDA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D); GTP binding  note ARABIDOPSIS RAB GTPASE HOMOLOG A1D (ATRABA1D); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: AtRABA1c (Arabidopsis Rab GTPase homolog A1c); GTP binding (TAIR:AT5G45750.1); Has 22463 Blast hits to 22423 proteins in 614 species: Archae - 17; Bacteria - 112; Metazoa - 12475; Fungi - 2938; Plants - 1917; Viruses - 19; Other Eukaryotes - 4985 (source: NCBI BLink).  protein_id AT4G18800.1p  transcript_id AT4G18800.1  protein_id AT4G18800.1p  transcript_id AT4G18800.1  
At4g18810	chr4:010325673	0.0	C/10325673-10325735,10325337-10325567,10325091-10325252,10324944-10324994,10324716-10324850,10324596-10324619,10324386-10324497,10324180-10324305,10324051-10324100,10323802-10323960,10323624-10323719,10323431-10323546,10323227-10323350,10323027-10323140,10322868-10322948,10322622-10322768	AT4G18810.1  CDS  gene_syn F28A21.220, F28A21_220  go_component vacuole|GO:0005773|14760709|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process regulation of nitrogen utilization|GO:0006808||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function transcription repressor activity|GO:0016564||IEA  product binding / catalytic/ transcription repressor  note binding / catalytic/ transcription repressor; FUNCTIONS IN: transcription repressor activity, binding, catalytic activity; INVOLVED IN: regulation of nitrogen utilization, metabolic process; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 (InterPro:IPR013857), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: HCF173 (high chlorophyll fluorescence phenotype 173); binding / catalytic/ transcription repressor (TAIR:AT1G16720.1); Has 1715 Blast hits to 1540 proteins in 261 species: Archae - 12; Bacteria - 728; Metazoa - 8; Fungi - 25; Plants - 255; Viruses - 0; Other Eukaryotes - 687 (source: NCBI BLink).  protein_id AT4G18810.1p  transcript_id AT4G18810.1  protein_id AT4G18810.1p  transcript_id AT4G18810.1  
At4g18815	chr4:010325965	0.0	C/10325965-10326036	AT4G18815.1  tRNA  gene_syn 67123.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: TCC)  transcript_id AT4G18815.1  
At4g18820	chr4:010330371	0.0	W/10330371-10332410,10332457-10332676,10332763-10333143,10333229-10333757,10333838-10333901,10333989-10334090	AT4G18820.1  CDS  gene_syn F28A21.230, F28A21_230  go_component plasma membrane|GO:0005886|17317660|IDA  go_process DNA replication|GO:0006260||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed DNA polymerase activity|GO:0003887||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  product ATP binding / DNA binding / DNA-directed DNA polymerase/ nucleoside-triphosphatase/ nucleotide binding  note ATP binding / DNA binding / DNA-directed DNA polymerase/ nucleoside-triphosphatase/ nucleotide binding; FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-directed DNA polymerase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: DNA replication; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA polymerase III clamp loader subunit, C-terminal (InterPro:IPR008921), DNA polymerase III, subunits gamma and tau (InterPro:IPR012763); BEST Arabidopsis thaliana protein match is: ATP binding / DNA binding / DNA-directed DNA polymerase/ nucleoside-triphosphatase/ nucleotide binding (TAIR:AT5G45720.1); Has 8498 Blast hits to 8483 proteins in 1530 species: Archae - 251; Bacteria - 3816; Metazoa - 347; Fungi - 261; Plants - 163; Viruses - 20; Other Eukaryotes - 3640 (source: NCBI BLink).  protein_id AT4G18820.1p  transcript_id AT4G18820.1  protein_id AT4G18820.1p  transcript_id AT4G18820.1  
At4g18823	chr4:010335225	0.0	C/10335225-10335282,10334911-10335077	AT4G18823.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19315.1); Has 13 Blast hits to 13 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G18823.1p  transcript_id AT4G18823.1  protein_id AT4G18823.1p  transcript_id AT4G18823.1  
At4g18830	chr4:010337449	0.0	W/10337449-10338498	AT4G18830.1  CDS  gene_syn ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 5, ATOFP5, F13C5.5, F13C5_5, OFP5  gene OFP5  function Member of the ovate protein family.Interacts with BLH1 and KNAT3. Regulates the subcellular localization of BLH1.  go_component nucleolus|GO:0005730|15781858|IDA  go_component cortical cytoskeleton|GO:0030863|15781858|IDA  go_process embryo sac development|GO:0009553|18055603|IMP  product OFP5 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 5)  note ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 5 (OFP5); INVOLVED IN: embryo sac development; LOCATED IN: cortical cytoskeleton, nucleolus; EXPRESSED IN: female gametophyte; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623, plant (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: OFP4 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4) (TAIR:AT1G06920.1); Has 649 Blast hits to 570 proteins in 87 species: Archae - 1; Bacteria - 10; Metazoa - 160; Fungi - 25; Plants - 200; Viruses - 0; Other Eukaryotes - 253 (source: NCBI BLink).  protein_id AT4G18830.1p  transcript_id AT4G18830.1  protein_id AT4G18830.1p  transcript_id AT4G18830.1  
At4g18840	chr4:010338719	0.0	C/10338719-10340356	AT4G18840.1  CDS  gene_syn F13C5.10, F13C5_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G74630.1); Has 14287 Blast hits to 5182 proteins in 140 species: Archae - 2; Bacteria - 8; Metazoa - 41; Fungi - 85; Plants - 13840; Viruses - 0; Other Eukaryotes - 311 (source: NCBI BLink).  protein_id AT4G18840.1p  transcript_id AT4G18840.1  protein_id AT4G18840.1p  transcript_id AT4G18840.1  
At4g18850	chr4:010342063	0.0	C/10342063-10342242	AT4G18850.1  CDS  gene_syn F13C5.20, F13C5_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G18850.1p  transcript_id AT4G18850.1  protein_id AT4G18850.1p  transcript_id AT4G18850.1  
At4g18860	chr4:010344687	0.0	W/10344687-10344791,10345400-10345588	AT4G18860.1  CDS  gene_syn F13C5.30, F13C5_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G18860.1p  transcript_id AT4G18860.1  protein_id AT4G18860.1p  transcript_id AT4G18860.1  
At4g18870	chr4:010346169	0.0	W/10346169-10346381,10346469-10346870,10346967-10347227	AT4G18870.1  CDS  gene_syn F13C5.40, F13C5_40  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product heat shock transcription factor family protein  note heat shock transcription factor family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: AT-HSFA4A; DNA binding / transcription factor (TAIR:AT4G18880.1); Has 1849 Blast hits to 1026 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 416; Fungi - 298; Plants - 879; Viruses - 0; Other Eukaryotes - 256 (source: NCBI BLink).  protein_id AT4G18870.1p  transcript_id AT4G18870.1  protein_id AT4G18870.1p  transcript_id AT4G18870.1  
At4g18880	chr4:010348830	0.0	C/10348830-10349051,10347769-10348752	AT4G18880.1  CDS  gene_syn AT-HSFA4A, F13C5.50, F13C5_50, HEAT SHOCK TRANSCRIPTION FACTOR A4A, HSF A4A  gene AT-HSFA4A  function member of Heat Stress Transcription Factor (Hsf) family  go_component nucleus|GO:0005634||IEA  go_process response to chitin|GO:0010200|17722694|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AT-HSFA4A; DNA binding / transcription factor  note AT-HSFA4A; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to chitin; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: RHA1 (ROOT HANDEDNESS 1); DNA binding / transcription factor (TAIR:AT5G45710.1); Has 1417 Blast hits to 1406 proteins in 164 species: Archae - 0; Bacteria - 2; Metazoa - 290; Fungi - 324; Plants - 522; Viruses - 0; Other Eukaryotes - 279 (source: NCBI BLink).  protein_id AT4G18880.1p  transcript_id AT4G18880.1  protein_id AT4G18880.1p  transcript_id AT4G18880.1  
At4g18890	chr4:010352774	0.0	W/10352774-10352989,10354621-10355259	AT4G18890.1  CDS  gene_syn F13C5.60, F13C5_60  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transcription regulator activity|GO:0030528|11970900|TAS  product brassinosteroid signalling positive regulator-related  note brassinosteroid signalling positive regulator-related; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BZR1, transcriptional repressor (InterPro:IPR008540); BEST Arabidopsis thaliana protein match is: brassinosteroid signalling positive regulator-related (TAIR:AT1G78700.1); Has 301 Blast hits to 214 proteins in 26 species: Archae - 0; Bacteria - 8; Metazoa - 41; Fungi - 2; Plants - 152; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT4G18890.1p  transcript_id AT4G18890.1  protein_id AT4G18890.1p  transcript_id AT4G18890.1  
At4g18900	chr4:010356465	0.0	W/10356465-10356723,10356841-10356920,10357006-10357104,10357192-10357315,10357421-10357482,10357576-10357626,10357707-10357768,10357865-10357961,10358039-10358113,10358203-10358301,10358412-10358552,10358733-10358825,10358935-10359078	AT4G18900.1  CDS  gene_syn F13C5.70, F13C5_70  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT4G18905.1); Has 26130 Blast hits to 15960 proteins in 500 species: Archae - 28; Bacteria - 2942; Metazoa - 11445; Fungi - 5721; Plants - 2620; Viruses - 4; Other Eukaryotes - 3370 (source: NCBI BLink).  protein_id AT4G18900.1p  transcript_id AT4G18900.1  protein_id AT4G18900.1p  transcript_id AT4G18900.1  
At4g18905	chr4:010360234	0.0	W/10360234-10360352,10360438-10360640,10360767-10360846,10360932-10361030,10361109-10361229,10361329-10361390,10361473-10361559,10361654-10361715,10361815-10361911,10361989-10362063,10362156-10362254,10362348-10362497,10362592-10362684,10362768-10362845,10362932-10362991	AT4G18905.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT4G18900.1); Has 21032 Blast hits to 13958 proteins in 467 species: Archae - 10; Bacteria - 2153; Metazoa - 9350; Fungi - 4672; Plants - 2086; Viruses - 7; Other Eukaryotes - 2754 (source: NCBI BLink).  protein_id AT4G18905.1p  transcript_id AT4G18905.1  protein_id AT4G18905.1p  transcript_id AT4G18905.1  
At4g18910	chr4:010366211	0.0	W/10366211-10366369,10366503-10366727,10367439-10367657,10367795-10367856,10367960-10368179	AT4G18910.1  CDS  gene_syn F13C5.80, F13C5_80, NIP1;2, NLM2, NOD26-LIKE INTRINSIC PROTEIN 1;2  gene NIP1;2  function Encodes an aquaporin homolog. Functions in arsenite transport and tolerance.  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_process arsenite transport|GO:0015700|19029297|IDA  go_process response to arsenic|GO:0046685|19029297|IMP  go_function arsenite transmembrane transporter activity|GO:0015105|19029297|IDA  go_function water channel activity|GO:0015250||ISS  product NIP1;2 (NOD26-LIKE INTRINSIC PROTEIN 1;2); arsenite transmembrane transporter/ water channel  note NOD26-LIKE INTRINSIC PROTEIN 1;2 (NIP1;2); FUNCTIONS IN: water channel activity, arsenite transmembrane transporter activity; INVOLVED IN: transport, arsenite transport, response to arsenic; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: NLM1; arsenite transmembrane transporter/ water channel (TAIR:AT4G19030.1); Has 6991 Blast hits to 6913 proteins in 1261 species: Archae - 78; Bacteria - 2742; Metazoa - 1164; Fungi - 292; Plants - 1416; Viruses - 4; Other Eukaryotes - 1295 (source: NCBI BLink).  protein_id AT4G18910.1p  transcript_id AT4G18910.1  protein_id AT4G18910.1p  transcript_id AT4G18910.1  
At4g18920	chr4:010368784	0.0	W/10368784-10369072,10369454-10369536,10369618-10369732,10369830-10370086	AT4G18920.1  CDS  gene_syn F13C5.90, F13C5_90  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1264 (InterPro:IPR010686); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45690.1); Has 189 Blast hits to 189 proteins in 83 species: Archae - 0; Bacteria - 85; Metazoa - 0; Fungi - 43; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G18920.1p  transcript_id AT4G18920.1  protein_id AT4G18920.1p  transcript_id AT4G18920.1  
At4g18930	chr4:010370797	0.0	W/10370797-10371084,10371299-10371353,10371683-10371885	AT4G18930.1  CDS  gene_syn F13C5.100, F13C5_100  go_component cytoplasm|GO:0005737|9148938|IDA  go_process tRNA splicing, via endonucleolytic cleavage and ligation|GO:0006388|9148938|TAS  go_function cyclic-nucleotide phosphodiesterase activity|GO:0004112|9148938|IDA  product cyclic phosphodiesterase  note cyclic phosphodiesterase; FUNCTIONS IN: cyclic-nucleotide phosphodiesterase activity; INVOLVED IN: tRNA splicing, via endonucleolytic cleavage and ligation; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA ligase/cyclic nucleotide phosphodiesterase (InterPro:IPR009097), 2 , 3 cyclic phosphodiesterase, plant (InterPro:IPR012386); BEST Arabidopsis thaliana protein match is: cyclic phosphodiesterase, putative (TAIR:AT4G18940.1); Has 82 Blast hits to 82 proteins in 19 species: Archae - 3; Bacteria - 10; Metazoa - 0; Fungi - 6; Plants - 34; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT4G18930.1p  transcript_id AT4G18930.1  protein_id AT4G18930.1p  transcript_id AT4G18930.1  
At4g18940	chr4:010372732	0.0	W/10372732-10373073,10373170-10373224,10373388-10373581	AT4G18940.1  CDS  gene_syn F13C5.110, F13C5_110  go_component intracellular|GO:0005622||IEA  go_process RNA metabolic process|GO:0016070||IEA  go_function catalytic activity|GO:0003824||IEA  go_function cyclic-nucleotide phosphodiesterase activity|GO:0004112||IEA  go_function cyclic-nucleotide phosphodiesterase activity|GO:0004112||ISS  product cyclic phosphodiesterase, putative  note cyclic phosphodiesterase, putative; FUNCTIONS IN: cyclic-nucleotide phosphodiesterase activity, catalytic activity; INVOLVED IN: RNA metabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: RNA ligase/cyclic nucleotide phosphodiesterase (InterPro:IPR009097), 2 , 3 cyclic phosphodiesterase, plant (InterPro:IPR012386); BEST Arabidopsis thaliana protein match is: cyclic phosphodiesterase (TAIR:AT4G18930.1); Has 123 Blast hits to 123 proteins in 16 species: Archae - 3; Bacteria - 8; Metazoa - 0; Fungi - 2; Plants - 34; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT4G18940.1p  transcript_id AT4G18940.1  protein_id AT4G18940.1p  transcript_id AT4G18940.1  
At4g18950	chr4:010375685	0.0	W/10375685-10376017,10376126-10376200,10376292-10376387,10376475-10376560,10376646-10376766,10376849-10376928,10377023-10377085,10377192-10377298,10377429-10377514,10377592-10377713,10377820-10377931,10378031-10378129	AT4G18950.1  CDS  gene_syn F13C5.120, F13C5_120  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process regulation of signal transduction|GO:0009966||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  product ankyrin protein kinase, putative  note ankyrin protein kinase, putative; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: regulation of signal transduction, protein amino acid phosphorylation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Integrin-linked protein kinase (InterPro:IPR016253), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin protein kinase, putative (TAIR:AT3G58760.1); Has 116131 Blast hits to 99643 proteins in 3446 species: Archae - 96; Bacteria - 9447; Metazoa - 52988; Fungi - 8496; Plants - 19258; Viruses - 634; Other Eukaryotes - 25212 (source: NCBI BLink).  protein_id AT4G18950.1p  transcript_id AT4G18950.1  protein_id AT4G18950.1p  transcript_id AT4G18950.1  
At4g18960	chr4:010383917	0.0	W/10383917-10384146,10387146-10387227,10387330-10387391,10387479-10387578,10387665-10387706,10387791-10387832,10387963-10388159,10388269-10388272	AT4G18960.1  CDS  gene_syn AG, AGAMOUS, AGAMOUS PROTEIN, F13C5.130, F13C5_130  gene AG  function Floral homeotic gene encoding a MADS domain transcription factor. Specifies floral meristem and carpel and stamen identity. Binds CArG box sequences. It is the only C function gene. It interacts genetically with the other homeotic genes to specify the floral organs. <10383917 10384146 CDS  go_component nucleus|GO:0005634||IEA  go_process specification of carpel identity|GO:0010094|14555696|IMP  go_process carpel development|GO:0048440|15634696|IMP  go_process stamen development|GO:0048443|15634696|IMP  go_process maintenance of floral organ identity|GO:0048497|9090883|IMP  go_function DNA binding|GO:0003677|15634696|IDA  go_function DNA binding|GO:0003677|8774892|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700|1973265|ISS  go_function transcription factor activity|GO:0003700|1973265|TAS  product AG (AGAMOUS); DNA binding / transcription factor  note AGAMOUS (AG); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: stamen development, maintenance of floral organ identity, carpel development, specification of carpel identity; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: SHP1 (SHATTERPROOF 1); DNA binding / protein binding / transcription factor (TAIR:AT3G58780.1); Has 5193 Blast hits to 5189 proteins in 701 species: Archae - 0; Bacteria - 2; Metazoa - 557; Fungi - 210; Plants - 4366; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT4G18960.1p  transcript_id AT4G18960.1  protein_id AT4G18960.1p  transcript_id AT4G18960.1  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process regulation of signal transduction|GO:0009966||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  product ankyrin protein kinase, putative  note ankyrin protein kinase, putative; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: regulation of signal transduction, protein amino acid phosphorylation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Integrin-linked protein kinase (InterPro:IPR016253), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin protein kinase, putative (TAIR:AT3G58760.1); Has 116131 Blast hits to 99643 proteins in 3446 species: Archae - 96; Bacteria - 9447; Metazoa - 52988; Fungi - 8496; Plants - 19258; Viruses - 634; Other Eukaryotes - 25212 (source: NCBI BLink).  protein_id AT4G18950.1p  transcript_id AT4G18950.1  protein_id AT4G18950.1p  transcript_id AT4G18950.1  
At4g18970	chr4:010390574	0.0	C/10390574-10390808,10390355-10390479,10389996-10390241,10389618-10389873,10389308-10389531	AT4G18970.1  CDS  gene_syn F13C5.1  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT5G45670.1); Has 1923 Blast hits to 1908 proteins in 190 species: Archae - 0; Bacteria - 280; Metazoa - 1; Fungi - 53; Plants - 1568; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT4G18970.1p  transcript_id AT4G18970.1  protein_id AT4G18970.1p  transcript_id AT4G18970.1  
At4g18975	chr4:010393419	0.0	C/10393419-10393503,10393266-10393314,10393020-10393116,10392798-10392941,10392502-10392714,10392170-10392364	AT4G18975.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: emb1417 (embryo defective 1417) (TAIR:AT4G21190.1); Has 60 Blast hits to 60 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G18975.2p  transcript_id AT4G18975.2  protein_id AT4G18975.2p  transcript_id AT4G18975.2  
At4g18975	chr4:010393609	0.0	C/10393609-10393665,10393419-10393520,10393266-10393321,10393020-10393116,10392798-10392941,10392502-10392714,10392170-10392364	AT4G18975.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: emb1417 (embryo defective 1417) (TAIR:AT4G21190.1); Has 60 Blast hits to 60 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G18975.1p  transcript_id AT4G18975.1  protein_id AT4G18975.1p  transcript_id AT4G18975.1  
At4g18975	chr4:010393609	0.0	C/10393609-10393665,10393419-10393520,10393266-10393321,10393020-10393116,10392798-10392941,10392502-10392714,10392170-10392364	AT4G18975.3  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: emb1417 (embryo defective 1417) (TAIR:AT4G21190.1); Has 60 Blast hits to 60 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G18975.3p  transcript_id AT4G18975.3  protein_id AT4G18975.3p  transcript_id AT4G18975.3  
At4g18980	chr4:010398973	0.0	W/10398973-10399293	AT4G18980.1  CDS  gene_syn F13C5.150, F13C5_150  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, male gametophyte, sepal, carpel, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF584 (InterPro:IPR007608); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45630.1); Has 98 Blast hits to 98 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G18980.1p  transcript_id AT4G18980.1  protein_id AT4G18980.1p  transcript_id AT4G18980.1  
At4g18990	chr4:010404038	0.0	C/10404038-10404248,10403556-10403656,10403247-10403455,10401941-10402493	AT4G18990.1  CDS  gene_syn F13C5.160, F13C5_160  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process cellular glucan metabolic process|GO:0006073||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762||IEA  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative  note xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, apoplast, cell wall; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4); hydrolase, acting on glycosyl bonds / hydrolase, hydrolyzing O-glycosyl compounds / xyloglucan:xyloglucosyl transferase (TAIR:AT1G32170.1); Has 1311 Blast hits to 1305 proteins in 198 species: Archae - 2; Bacteria - 159; Metazoa - 0; Fungi - 283; Plants - 796; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT4G18990.1p  transcript_id AT4G18990.1  protein_id AT4G18990.1p  transcript_id AT4G18990.1  
At4g19000	chr4:010405503	0.0	W/10405503-10405811,10405899-10406149,10406241-10406370,10406470-10406610,10406695-10406855,10406974-10407118,10407256-10407339	AT4G19000.1  CDS  gene_syn F13C5.170, F13C5_170  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product IWS1 C-terminus family protein  note IWS1 C-terminus family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: TFIIS N-terminal (InterPro:IPR017923), IWS1, C-terminal (InterPro:IPR008654); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32130.1); Has 870 Blast hits to 794 proteins in 190 species: Archae - 2; Bacteria - 61; Metazoa - 241; Fungi - 130; Plants - 38; Viruses - 5; Other Eukaryotes - 393 (source: NCBI BLink).  protein_id AT4G19000.1p  transcript_id AT4G19000.1  protein_id AT4G19000.1p  transcript_id AT4G19000.1  
At4g19003	chr4:010408524	0.0	C/10408524-10408582,10408305-10408444,10408154-10408207,10407931-10408019,10407784-10407859,10407571-10407692	AT4G19003.1  CDS  gene_syn VPS25  gene VPS25  go_component ESCRT II complex|GO:0000814|17090720|ISS  go_process vesicle-mediated transport|GO:0016192|16488176|ISS  go_function molecular_function|GO:0003674||ND  product VPS25  note VPS25; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: ESCRT II complex; CONTAINS InterPro DOMAIN/s: ESCRT-II complex, vps25 subunit, N-terminal winged helix (InterPro:IPR014041), ESCRT-II complex, vps25 subunit, C-terminal winged helix (InterPro:IPR014040), ESCRT-II complex, vps25 subunit (InterPro:IPR008570); Has 237 Blast hits to 237 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 79; Plants - 22; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT4G19003.1p  transcript_id AT4G19003.1  protein_id AT4G19003.1p  transcript_id AT4G19003.1  
At4g19003	chr4:010408524	0.0	C/10408524-10408582,10408305-10408444,10408154-10408207,10407931-10408019,10407784-10407859,10407571-10407692	AT4G19003.2  CDS  gene_syn VPS25  gene VPS25  go_component ESCRT II complex|GO:0000814|17090720|ISS  go_process vesicle-mediated transport|GO:0016192|16488176|ISS  go_function molecular_function|GO:0003674||ND  product VPS25  note VPS25; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: ESCRT II complex; CONTAINS InterPro DOMAIN/s: ESCRT-II complex, vps25 subunit, N-terminal winged helix (InterPro:IPR014041), ESCRT-II complex, vps25 subunit, C-terminal winged helix (InterPro:IPR014040), ESCRT-II complex, vps25 subunit (InterPro:IPR008570); Has 237 Blast hits to 237 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 79; Plants - 22; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT4G19003.2p  transcript_id AT4G19003.2  protein_id AT4G19003.2p  transcript_id AT4G19003.2  
At4g19006	chr4:010411198	0.0	C/10411198-10411347,10410448-10410894,10410173-10410253,10409883-10410079,10409694-10409793,10409349-10409534	AT4G19006.1  CDS  go_component nucleus|GO:0005634|11742986|TAS  go_component proteasome regulatory particle, lid subcomplex|GO:0008541||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_process protein catabolic process|GO:0030163|11742986|TAS  go_function molecular_function|GO:0003674||ND  product 26S proteasome regulatory subunit, putative (RPN9)  note 26S proteasome regulatory subunit, putative (RPN9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus, proteasome regulatory particle, lid subcomplex; CONTAINS InterPro DOMAIN/s: Proteasome component region PCI (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: 26S proteasome regulatory subunit, putative (RPN9) (TAIR:AT5G45620.1); Has 799 Blast hits to 796 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 466; Fungi - 144; Plants - 91; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT4G19006.1p  transcript_id AT4G19006.1  protein_id AT4G19006.1p  transcript_id AT4G19006.1  
At4g19010	chr4:010413154	0.0	C/10413154-10414221,10412737-10412926,10412308-10412453,10412163-10412230,10411929-10412031,10411715-10411840	AT4G19010.1  CDS  gene_syn F13C5.180, F13C5_180  go_process metabolic process|GO:0008152||IEA  go_function 4-coumarate-CoA ligase activity|GO:0016207|7784527|ISS  go_function 4-coumarate-CoA ligase activity|GO:0016207||ISS  product 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein  note 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein; FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: OPCL1 (OPC-8:0 COA LIGASE1); 4-coumarate-CoA ligase (TAIR:AT1G20510.1); Has 54010 Blast hits to 49832 proteins in 2259 species: Archae - 568; Bacteria - 29489; Metazoa - 2956; Fungi - 3088; Plants - 1314; Viruses - 1; Other Eukaryotes - 16594 (source: NCBI BLink).  protein_id AT4G19010.1p  transcript_id AT4G19010.1  protein_id AT4G19010.1p  transcript_id AT4G19010.1  
At4g19020	chr4:010414526	0.0	W/10414526-10415089,10415199-10415233,10415344-10416376,10416561-10416595,10416705-10416804,10416983-10417087,10417170-10417289,10417420-10417510,10417689-10417873,10417982-10418047,10418128-10418376,10418543-10418601,10418677-10418743,10418871-10419200,10419273-10419341,10419434-10419520,10419596-10419683,10419799-10419917,10419995-10420096,10420282-10420325,10420409-10420478,10420563-10420666,10420771-10420936	AT4G19020.1  CDS  gene_syn CMT2, F13C5.190, F13C5_190, chromomethylase 2  gene CMT2  go_component chromatin|GO:0000785||IEA  go_component nucleus|GO:0005634||IEA  go_process DNA methylation|GO:0006306||IEA  go_process chromatin assembly or disassembly|GO:0006333||IEA  go_function DNA binding|GO:0003677||IEA  go_function chromatin binding|GO:0003682||IEA  go_process DNA methylation|GO:0006306||ISS  go_function DNA binding|GO:0003677||ISS  product CMT2 (chromomethylase 2); DNA binding / chromatin binding  note chromomethylase 2 (CMT2); FUNCTIONS IN: chromatin binding, DNA binding; INVOLVED IN: chromatin assembly or disassembly, DNA methylation; LOCATED IN: chromatin, nucleus; CONTAINS InterPro DOMAIN/s: C-5 cytosine-specific DNA methylase (InterPro:IPR001525), Bromo adjacent region (InterPro:IPR001025), Chromo domain-like (InterPro:IPR016197), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: CMT3 (chromomethylase 3); DNA (cytosine-5-)-methyltransferase (TAIR:AT1G69770.1); Has 3518 Blast hits to 3037 proteins in 617 species: Archae - 106; Bacteria - 1441; Metazoa - 665; Fungi - 229; Plants - 237; Viruses - 21; Other Eukaryotes - 819 (source: NCBI BLink).  protein_id AT4G19020.1p  transcript_id AT4G19020.1  protein_id AT4G19020.1p  transcript_id AT4G19020.1  
At4g19030	chr4:010423242	0.0	C/10423242-10423409,10422905-10423129,10422262-10422480,10422049-10422110,10421728-10421944	AT4G19030.1  CDS  gene_syn AT-NLM1, F13C5.200, F13C5_200, NIP1;1, NLM1, NOD26-like intrinsic protein 1;1  gene NLM1  function an aquaporin whose expression level is reduced by ABA, NaCl, dark, and dessication. is expressed at relatively low levels under normal conditions. Also functions in arsenite transport and tolerance.  go_component plasma membrane|GO:0005886|19029297|IDA  go_component membrane|GO:0016020|9276952|ISS  go_process transport|GO:0006810||ISS  go_process arsenite transport|GO:0015700|19029297|IDA  go_process response to arsenic|GO:0046685|19029297|IMP  go_function arsenite transmembrane transporter activity|GO:0015105|19029297|IDA  go_function water channel activity|GO:0015250|9276952|IDA  go_function water channel activity|GO:0015250||ISS  product NLM1; arsenite transmembrane transporter/ water channel  note NLM1; FUNCTIONS IN: water channel activity, arsenite transmembrane transporter activity; INVOLVED IN: transport, arsenite transport, response to arsenic; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: NIP1;2 (NOD26-LIKE INTRINSIC PROTEIN 1;2); arsenite transmembrane transporter/ water channel (TAIR:AT4G18910.1); Has 6918 Blast hits to 6868 proteins in 1253 species: Archae - 80; Bacteria - 2713; Metazoa - 1163; Fungi - 290; Plants - 1406; Viruses - 4; Other Eukaryotes - 1262 (source: NCBI BLink).  protein_id AT4G19030.1p  transcript_id AT4G19030.1  protein_id AT4G19030.1p  transcript_id AT4G19030.1  
At4g19035	chr4:010428456	0.0	C/10428456-10428516,10427807-10428000	AT4G19035.1  CDS  gene_syn LCR7, Low-molecular-weight cysteine-rich 7  gene LCR7  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product LCR7 (Low-molecular-weight cysteine-rich 7)  note Low-molecular-weight cysteine-rich 7 (LCR7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); BEST Arabidopsis thaliana protein match is: LCR15 (Low-molecular-weight cysteine-rich 15) (TAIR:AT4G19038.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G19035.1p  transcript_id AT4G19035.1  protein_id AT4G19035.1p  transcript_id AT4G19035.1  
At4g19038	chr4:010430899	0.0	C/10430899-10430959,10430074-10430267	AT4G19038.1  CDS  gene_syn LCR15, Low-molecular-weight cysteine-rich 15  gene LCR15  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||IEA  product LCR15 (Low-molecular-weight cysteine-rich 15)  note Low-molecular-weight cysteine-rich 15 (LCR15); INVOLVED IN: defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: LCR7 (Low-molecular-weight cysteine-rich 7) (TAIR:AT4G19035.1); Has 10 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G19038.1p  transcript_id AT4G19038.1  protein_id AT4G19038.1p  transcript_id AT4G19038.1  
At4g19040	chr4:010437034	0.0	C/10437034-10437171,10436834-10436908,10436605-10436658,10436437-10436502,10436209-10436312,10435650-10435717,10435453-10435569,10435048-10435088,10434844-10434944,10434460-10434555,10434102-10434166,10433938-10434009,10433685-10433840,10433336-10433562,10433217-10433256,10432978-10433126,10432785-10432886,10432591-10432635,10432357-10432497,10432174-10432269,10431993-10432094,10431799-10431900	AT4G19040.1  CDS  gene_syn EDR2, F13C5.210, F13C5_210  gene EDR2  function Encodes a PH and START domain-containing protein that mediates resistance to pathogenic fungi. Resistance requires salicylic acid signalling. Mutants are resistant to E. cichoracearum. Expressed throughout plant tissues and possibly localized to membranes /mitochondrion.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function lipid binding|GO:0008289||ISS  product EDR2; lipid binding  note EDR2; FUNCTIONS IN: lipid binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769), Pleckstrin homology-type (InterPro:IPR011993), Lipid-binding START (InterPro:IPR002913), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein (TAIR:AT5G45560.1); Has 289 Blast hits to 286 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 57; Fungi - 0; Plants - 184; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT4G19040.1p  transcript_id AT4G19040.1  protein_id AT4G19040.1p  transcript_id AT4G19040.1  
At4g19040	chr4:010437034	0.0	C/10437034-10437171,10436834-10436908,10436605-10436658,10436437-10436502,10436209-10436312,10435650-10435735,10435453-10435569,10435048-10435088,10434844-10434944,10434460-10434555,10434102-10434166,10433938-10434009,10433685-10433840,10433336-10433562,10433217-10433256,10432978-10433126,10432785-10432886,10432591-10432635,10432357-10432497,10432174-10432269,10431993-10432094,10431799-10431900	AT4G19040.2  CDS  gene_syn EDR2, F13C5.210, F13C5_210  gene EDR2  function Encodes a PH and START domain-containing protein that mediates resistance to pathogenic fungi. Resistance requires salicylic acid signalling. Mutants are resistant to E. cichoracearum. Expressed throughout plant tissues and possibly localized to membranes /mitochondrion.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function lipid binding|GO:0008289||ISS  product EDR2; lipid binding  note EDR2; FUNCTIONS IN: lipid binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769), Lipid-binding START (InterPro:IPR002913), Pleckstrin homology-type (InterPro:IPR011993), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein (TAIR:AT5G45560.1); Has 286 Blast hits to 283 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 57; Fungi - 0; Plants - 182; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT4G19040.2p  transcript_id AT4G19040.2  protein_id AT4G19040.2p  transcript_id AT4G19040.2  
At4g19045	chr4:010439766	0.0	C/10439766-10439788,10439380-10439428,10439180-10439288,10439013-10439106,10438640-10438773,10438395-10438558,10438213-10438287	AT4G19045.1  CDS  go_function protein binding|GO:0005515||IEA  product protein binding  note protein binding; FUNCTIONS IN: protein binding; CONTAINS InterPro DOMAIN/s: Mob1/phocein (InterPro:IPR005301); BEST Arabidopsis thaliana protein match is: mob1/phocein family protein (TAIR:AT5G45550.1).  protein_id AT4G19045.1p  transcript_id AT4G19045.1  protein_id AT4G19045.1p  transcript_id AT4G19045.1  
At4g19050	chr4:010440245	0.0	C/10440245-10443786,10440102-10440165	AT4G19050.1  CDS  gene_syn T18B16.1  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  product ATP binding / protein binding  note ATP binding / protein binding; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: apoptosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT5G45510.2); Has 24098 Blast hits to 12654 proteins in 512 species: Archae - 25; Bacteria - 1713; Metazoa - 6225; Fungi - 542; Plants - 13996; Viruses - 29; Other Eukaryotes - 1568 (source: NCBI BLink).  protein_id AT4G19050.1p  transcript_id AT4G19050.1  protein_id AT4G19050.1p  transcript_id AT4G19050.1  
At4g19060	chr4:010445082	0.0	C/10445082-10446233	AT4G19060.1  CDS  gene_syn T18B16.2  go_process apoptosis|GO:0006915||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  product disease resistance protein-related  note disease resistance protein-related; FUNCTIONS IN: ATP binding; INVOLVED IN: apoptosis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182); BEST Arabidopsis thaliana protein match is: disease resistance protein-related (TAIR:AT5G45490.2); Has 3059 Blast hits to 3040 proteins in 145 species: Archae - 0; Bacteria - 8; Metazoa - 16; Fungi - 9; Plants - 2988; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT4G19060.1p  transcript_id AT4G19060.1  protein_id AT4G19060.1p  transcript_id AT4G19060.1  
At4g19070	chr4:010448077	0.0	C/10448077-10448079,10447491-10447737,10447094-10447327,10446770-10446801	AT4G19070.1  CDS  gene_syn T18B16.3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product cadmium-responsive protein / cadmium induced protein (AS8)  note cadmium-responsive protein / cadmium induced protein (AS8); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; Has 110 Blast hits to 61 proteins in 24 species: Archae - 2; Bacteria - 7; Metazoa - 10; Fungi - 0; Plants - 32; Viruses - 47; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT4G19070.1p  transcript_id AT4G19070.1  protein_id AT4G19070.1p  transcript_id AT4G19070.1  
At4g19080	chr4:010448813	0.0	C/10448813-10449796	AT4G19080.1  CDS  gene_syn T18B16.4  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF594 (InterPro:IPR007658); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45540.1); Has 436 Blast hits to 427 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 436; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G19080.1p  transcript_id AT4G19080.1  protein_id AT4G19080.1p  transcript_id AT4G19080.1  
At4g19090	chr4:010449900	0.0	W/10449900-10449918,10449972-10450130,10450575-10451085,10451131-10451989,10452050-10452757	AT4G19090.1  CDS  gene_syn T18B16.5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF594 (InterPro:IPR007658); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45470.1); Has 722 Blast hits to 484 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 720; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G19090.1p  transcript_id AT4G19090.1  protein_id AT4G19090.1p  transcript_id AT4G19090.1  
At4g19095	chr4:010453398	0.0	C/10453398-10453468,10453189-10453294	AT4G19095.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G19095.1p  transcript_id AT4G19095.1  protein_id AT4G19095.1p  transcript_id AT4G19095.1  
At4g19100	chr4:010453453	0.0	W/10453453-10453509,10453772-10454359	AT4G19100.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52780.1); Has 490 Blast hits to 474 proteins in 126 species: Archae - 0; Bacteria - 105; Metazoa - 160; Fungi - 44; Plants - 41; Viruses - 2; Other Eukaryotes - 138 (source: NCBI BLink).  protein_id AT4G19100.1p  transcript_id AT4G19100.1  protein_id AT4G19100.1p  transcript_id AT4G19100.1  
At4g19110	chr4:010456955	0.0	C/10456955-10457032,10456727-10456865,10456478-10456580,10456281-10456333,10456121-10456187,10455913-10456021,10455745-10455810,10455578-10455646,10455430-10455493,10455115-10455342,10454770-10455008	AT4G19110.3  CDS  gene_syn T18B16.80, T18B16_80  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT5G45430.1); Has 83299 Blast hits to 82421 proteins in 2435 species: Archae - 40; Bacteria - 6657; Metazoa - 37245; Fungi - 7983; Plants - 14539; Viruses - 464; Other Eukaryotes - 16371 (source: NCBI BLink).  protein_id AT4G19110.3p  transcript_id AT4G19110.3  protein_id AT4G19110.3p  transcript_id AT4G19110.3  
At4g19110	chr4:010457461	0.0	C/10457461-10457468,10457281-10457359,10457127-10457195,10456955-10457044,10456727-10456865,10456478-10456580,10456281-10456333,10456121-10456187,10455913-10456021,10455745-10455810,10455578-10455646,10455430-10455493,10455115-10455342,10454770-10455011	AT4G19110.1  CDS  gene_syn T18B16.80, T18B16_80  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT5G45430.1); Has 93297 Blast hits to 92052 proteins in 3156 species: Archae - 56; Bacteria - 7832; Metazoa - 41360; Fungi - 8552; Plants - 17183; Viruses - 480; Other Eukaryotes - 17834 (source: NCBI BLink).  protein_id AT4G19110.1p  transcript_id AT4G19110.1  protein_id AT4G19110.1p  transcript_id AT4G19110.1  
At4g19110	chr4:010457461	0.0	C/10457461-10457468,10457281-10457359,10457127-10457195,10456955-10457044,10456727-10456865,10456478-10456580,10456281-10456333,10456121-10456187,10455913-10456021,10455745-10455810,10455578-10455646,10455430-10455493,10455115-10455342,10454770-10455020	AT4G19110.2  CDS  gene_syn T18B16.80, T18B16_80  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT5G45430.1); Has 93300 Blast hits to 92055 proteins in 3156 species: Archae - 56; Bacteria - 7847; Metazoa - 41349; Fungi - 8552; Plants - 17185; Viruses - 480; Other Eukaryotes - 17831 (source: NCBI BLink).  protein_id AT4G19110.2p  transcript_id AT4G19110.2  protein_id AT4G19110.2p  transcript_id AT4G19110.2  
At4g19112	chr4:010458368	0.0	C/10458368-10458493	AT4G19112.1  CDS  gene_syn CPuORF25, Conserved peptide upstream open reading frame 25  gene CPuORF25  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF25 represents a conserved upstream opening reading frame relative to major ORF AT4G19110.1  product CPuORF25 (Conserved peptide upstream open reading frame 25)  note Conserved peptide upstream open reading frame 25 (CPuORF25); BEST Arabidopsis thaliana protein match is: CPuORF24 (Conserved peptide upstream open reading frame 24) (TAIR:AT5G45428.1); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G19112.1p  transcript_id AT4G19112.1  protein_id AT4G19112.1p  transcript_id AT4G19112.1  
At4g19120	chr4:010462774	0.0	C/10462774-10463034,10462537-10462685,10462231-10462426,10461929-10462139,10461137-10461815,10460977-10461054,10460665-10460893	AT4G19120.1  CDS  gene_syn ERD3, T18B16.90, T18B16_90, early-responsive to dehydration 3  gene ERD3  go_component cellular_component|GO:0005575||ND  go_process response to water deprivation|GO:0009414|8075396|IEP  product ERD3 (early-responsive to dehydration 3)  note early-responsive to dehydration 3 (ERD3); INVOLVED IN: response to water deprivation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive protein, putative (TAIR:AT1G31850.3); Has 578 Blast hits to 564 proteins in 56 species: Archae - 4; Bacteria - 67; Metazoa - 0; Fungi - 3; Plants - 484; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT4G19120.1p  transcript_id AT4G19120.1  protein_id AT4G19120.1p  transcript_id AT4G19120.1  
At4g19120	chr4:010462774	0.0	C/10462774-10463034,10462537-10462685,10462231-10462426,10461929-10462139,10461137-10461815,10460977-10461054,10460665-10460893	AT4G19120.2  CDS  gene_syn ERD3, T18B16.90, T18B16_90, early-responsive to dehydration 3  gene ERD3  go_component cellular_component|GO:0005575||ND  go_process response to water deprivation|GO:0009414|8075396|IEP  product ERD3 (early-responsive to dehydration 3)  note early-responsive to dehydration 3 (ERD3); INVOLVED IN: response to water deprivation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive protein, putative (TAIR:AT1G31850.3); Has 578 Blast hits to 564 proteins in 56 species: Archae - 4; Bacteria - 67; Metazoa - 0; Fungi - 3; Plants - 484; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT4G19120.2p  transcript_id AT4G19120.2  protein_id AT4G19120.2p  transcript_id AT4G19120.2  
At4g19130	chr4:010468809	0.0	C/10468809-10469092,10466618-10468688	AT4G19130.1  CDS  gene_syn T18B16.100, T18B16_100  go_component nucleus|GO:0005634||IEA  go_process DNA replication|GO:0006260||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  product DNA binding / nucleic acid binding / zinc ion binding  note DNA binding / nucleic acid binding / zinc ion binding; FUNCTIONS IN: DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: DNA replication; LOCATED IN: nucleus; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Replication factor-A, C-terminal (InterPro:IPR013955), Replication factor-a protein 1 Rpa1 (InterPro:IPR004591), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Zinc finger, CCHC-type (InterPro:IPR001878), Replication factor-A protein 1, N-terminal (InterPro:IPR007199); BEST Arabidopsis thaliana protein match is: replication protein, putative (TAIR:AT5G45400.1); Has 609 Blast hits to 584 proteins in 169 species: Archae - 16; Bacteria - 0; Metazoa - 189; Fungi - 98; Plants - 176; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink).  protein_id AT4G19130.1p  transcript_id AT4G19130.1  protein_id AT4G19130.1p  transcript_id AT4G19130.1  
At4g19140	chr4:010469830	0.0	W/10469830-10470058,10470232-10470362,10470449-10470574,10470659-10470786,10470978-10471275	AT4G19140.1  CDS  gene_syn T18B16.110, T18B16_110  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 15 Blast hits to 15 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G19140.1p  transcript_id AT4G19140.1  protein_id AT4G19140.1p  transcript_id AT4G19140.1  
At4g19150	chr4:010471578	0.0	C/10471578-10472240	AT4G19150.2  CDS  gene_syn T18B16.120, T18B16_120  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT3G09890.1); Has 54804 Blast hits to 17663 proteins in 679 species: Archae - 44; Bacteria - 2907; Metazoa - 31936; Fungi - 3014; Plants - 1333; Viruses - 623; Other Eukaryotes - 14947 (source: NCBI BLink).  protein_id AT4G19150.2p  transcript_id AT4G19150.2  protein_id AT4G19150.2p  transcript_id AT4G19150.2  
At4g19150	chr4:010472520	0.0	C/10472520-10472677,10471578-10472151	AT4G19150.1  CDS  gene_syn T18B16.120, T18B16_120  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT3G09890.1); Has 67868 Blast hits to 22594 proteins in 807 species: Archae - 53; Bacteria - 4070; Metazoa - 36594; Fungi - 4728; Plants - 2294; Viruses - 864; Other Eukaryotes - 19265 (source: NCBI BLink).  protein_id AT4G19150.1p  transcript_id AT4G19150.1  protein_id AT4G19150.1p  transcript_id AT4G19150.1  
At4g19160	chr4:010477521	0.0	W/10477521-10477530,10477821-10477887,10477975-10478131,10478244-10478321,10478541-10478904,10478985-10479262,10479360-10479478,10479563-10479655,10479788-10479947	AT4G19160.3  CDS  gene_syn T18B16.130, T18B16_130  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 234 Blast hits to 234 proteins in 116 species: Archae - 0; Bacteria - 194; Metazoa - 2; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT4G19160.3p  transcript_id AT4G19160.3  protein_id AT4G19160.3p  transcript_id AT4G19160.3  
At4g19160	chr4:010477772	0.0	W/10477772-10477887,10477975-10478131,10478244-10478321,10478541-10478904,10478985-10479262,10479360-10479478,10479563-10479655,10479791-10479947	AT4G19160.2  CDS  gene_syn T18B16.130, T18B16_130  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 238 Blast hits to 238 proteins in 118 species: Archae - 0; Bacteria - 198; Metazoa - 2; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT4G19160.2p  transcript_id AT4G19160.2  protein_id AT4G19160.2p  transcript_id AT4G19160.2  
At4g19160	chr4:010478613	0.0	W/10478613-10478904,10478985-10479262,10479360-10479478,10479563-10479655,10479791-10479947	AT4G19160.1  CDS  gene_syn T18B16.130, T18B16_130  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 236 Blast hits to 236 proteins in 118 species: Archae - 0; Bacteria - 198; Metazoa - 2; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT4G19160.1p  transcript_id AT4G19160.1  protein_id AT4G19160.1p  transcript_id AT4G19160.1  
At4g19170	chr4:010481835	0.0	W/10481835-10483622	AT4G19170.1  CDS  gene_syn NCED4, NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4, T18B16.140, T18B16_140  gene NCED4  function chloroplast-targeted member of a family of enzymes similar to nine-cis-epoxycarotenoid dioxygenase  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_component plastoglobule|GO:0010287|16461379|IDA  product NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4)  note NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4 (NCED4); LOCATED IN: chloroplast, plastoglobule; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: NCED5 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5); 9-cis-epoxycarotenoid dioxygenase (TAIR:AT1G30100.1); Has 2187 Blast hits to 2150 proteins in 360 species: Archae - 10; Bacteria - 527; Metazoa - 282; Fungi - 100; Plants - 570; Viruses - 0; Other Eukaryotes - 698 (source: NCBI BLink).  protein_id AT4G19170.1p  transcript_id AT4G19170.1  protein_id AT4G19170.1p  transcript_id AT4G19170.1  
At4g19180	chr4:010485924	0.0	C/10485924-10487868,10485518-10485795	AT4G19180.1  CDS  gene_syn T18B16.150, T18B16_150  go_function hydrolase activity|GO:0016787||IEA  go_function hydrolase activity|GO:0016787||ISS  product nucleoside phosphatase family protein / GDA1/CD39 family protein  note nucleoside phosphatase family protein / GDA1/CD39 family protein; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407); BEST Arabidopsis thaliana protein match is: nucleoside phosphatase family protein / GDA1/CD39 family protein (TAIR:AT2G02970.1); Has 1018 Blast hits to 1017 proteins in 158 species: Archae - 0; Bacteria - 20; Metazoa - 512; Fungi - 202; Plants - 187; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).  protein_id AT4G19180.1p  transcript_id AT4G19180.1  protein_id AT4G19180.1p  transcript_id AT4G19180.1  
At4g19185	chr4:010491271	0.0	C/10491271-10491488,10490649-10490711,10490431-10490547,10490063-10490348,10489791-10489946,10489549-10489700,10489201-10489405	AT4G19185.1  CDS  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  product integral membrane family protein  note integral membrane family protein; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin-related / integral membrane family protein (TAIR:AT5G45370.2); Has 2223 Blast hits to 2208 proteins in 424 species: Archae - 18; Bacteria - 1141; Metazoa - 6; Fungi - 0; Plants - 631; Viruses - 0; Other Eukaryotes - 427 (source: NCBI BLink).  protein_id AT4G19185.1p  transcript_id AT4G19185.1  protein_id AT4G19185.1p  transcript_id AT4G19185.1  
At4g19190	chr4:010493323	0.0	W/10493323-10493559,10493650-10493712,10494036-10494187,10494297-10494419,10494544-10494745,10494867-10494981,10495074-10495969	AT4G19190.1  CDS  gene_syn T18B16.160, T18B16_160  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc knuckle (CCHC-type) family protein  note zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); Has 29640 Blast hits to 15322 proteins in 578 species: Archae - 9; Bacteria - 1666; Metazoa - 14701; Fungi - 2090; Plants - 1417; Viruses - 133; Other Eukaryotes - 9624 (source: NCBI BLink).  protein_id AT4G19190.1p  transcript_id AT4G19190.1  protein_id AT4G19190.1p  transcript_id AT4G19190.1  
At4g19191	chr4:010496228	0.0	W/10496228-10498192	AT4G19191.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: CRR22 (CHLORORESPIRATORY REDUCTION22); endonuclease (TAIR:AT1G11290.1); Has 16668 Blast hits to 5144 proteins in 160 species: Archae - 1; Bacteria - 6; Metazoa - 71; Fungi - 62; Plants - 16190; Viruses - 0; Other Eukaryotes - 338 (source: NCBI BLink).  protein_id AT4G19191.1p  transcript_id AT4G19191.1  protein_id AT4G19191.1p  transcript_id AT4G19191.1  
At4g19200	chr4:010499277	0.0	W/10499277-10499535,10500110-10500390	AT4G19200.1  CDS  gene_syn T18B16.170, T18B16_170  product proline-rich family protein  note proline-rich family protein; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: XYPPX repeat (InterPro:IPR006031); Has 21331 Blast hits to 10933 proteins in 746 species: Archae - 2; Bacteria - 4207; Metazoa - 10453; Fungi - 2106; Plants - 2404; Viruses - 136; Other Eukaryotes - 2023 (source: NCBI BLink).  protein_id AT4G19200.1p  transcript_id AT4G19200.1  protein_id AT4G19200.1p  transcript_id AT4G19200.1  
At4g19210	chr4:010501906	0.0	W/10501906-10502008,10502229-10502314,10502410-10502507,10502591-10502708,10502798-10502887,10502993-10503297,10503393-10503588,10503674-10503859,10503949-10504218,10504306-10504551,10504657-10504776	AT4G19210.1  CDS  gene_syn ATRLI2, T18B16.180, T18B16_180  gene ATRLI2  function member of RLI subfamily  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  product ATRLI2; transporter  note ATRLI2; FUNCTIONS IN: transporter activity; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ABC transporter-like (InterPro:IPR003439), 4Fe-4S ferredoxin, iron-sulphur binding, subgroup (InterPro:IPR001450), ATPase, AAA+ type, core (InterPro:IPR003593), 4Fe-4S ferredoxin, iron-sulpur binding domain (InterPro:IPR017896), 4Fe-4S ferredoxin, iron-sulphur binding, conserved site (InterPro:IPR017900), Possible metal-binding region in RNase L inhibitor, RLI (InterPro:IPR007209), ABC transporter, ABCE (InterPro:IPR013283), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATRLI1; transporter (TAIR:AT3G13640.1); Has 286227 Blast hits to 175833 proteins in 2431 species: Archae - 6278; Bacteria - 211736; Metazoa - 6075; Fungi - 1640; Plants - 1940; Viruses - 7; Other Eukaryotes - 58551 (source: NCBI BLink).  protein_id AT4G19210.1p  transcript_id AT4G19210.1  protein_id AT4G19210.1p  transcript_id AT4G19210.1  
At4g19220	chr4:010506542	0.0	C/10506542-10508121,10505266-10506484	AT4G19220.1  CDS  gene_syn T18B16.190, T18B16_190  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16480.1); Has 16621 Blast hits to 4346 proteins in 93 species: Archae - 0; Bacteria - 2; Metazoa - 37; Fungi - 15; Plants - 16374; Viruses - 0; Other Eukaryotes - 193 (source: NCBI BLink).  protein_id AT4G19220.1p  transcript_id AT4G19220.1  protein_id AT4G19220.1p  transcript_id AT4G19220.1  
At4g19230	chr4:010521524	0.0	W/10521524-10521723,10521797-10522115,10522237-10522623,10522738-10522903,10522984-10523090,10523181-10523299,10523412-10523517	AT4G19230.1  CDS  gene_syn CYP707A1, T18B16.200, T18B16_200  gene CYP707A1  function Encodes a protein with ABA 8 -hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. CYP707A1 appears to play an important role in determining the ABA levels in dry seeds. Gene involved in postgermination growth. Overexpression of CYP707A1 leads to a decrease in ABA levels and a reduction in after-ripening period to break dormancy.  go_component endomembrane system|GO:0012505||IEA  go_process response to desiccation|GO:0009269|15064374|IEP  go_process response to red or far red light|GO:0009639|17010113|IEP  go_process abscisic acid metabolic process|GO:0009687|16543410|IMP  go_process response to abscisic acid stimulus|GO:0009737|15064374|IEP  go_process drought recovery|GO:0009819|15044947|IEP  go_process release of seed from dormancy|GO:0048838|16507085|IMP  go_function (+)-abscisic acid 8 -hydroxylase activity|GO:0010295|15064374|IDA  go_function oxygen binding|GO:0019825||ISS  product CYP707A1; (+)-abscisic acid 8 -hydroxylase/ oxygen binding  note CYP707A1; FUNCTIONS IN: oxygen binding, (+)-abscisic acid 8 -hydroxylase activity; INVOLVED IN: in 6 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973); BEST Arabidopsis thaliana protein match is: CYP707A3; (+)-abscisic acid 8 -hydroxylase/ oxygen binding (TAIR:AT5G45340.1); Has 25735 Blast hits to 25673 proteins in 1383 species: Archae - 51; Bacteria - 4687; Metazoa - 10053; Fungi - 4033; Plants - 5031; Viruses - 6; Other Eukaryotes - 1874 (source: NCBI BLink).  protein_id AT4G19230.1p  transcript_id AT4G19230.1  protein_id AT4G19230.1p  transcript_id AT4G19230.1  
At4g19230	chr4:010521524	0.0	W/10521524-10521723,10521797-10522115,10522237-10522623,10522738-10522903,10522984-10523090,10523181-10523301,10523412-10523566	AT4G19230.2  CDS  gene_syn CYP707A1, T18B16.200, T18B16_200  gene CYP707A1  function Encodes a protein with ABA 8 -hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. CYP707A1 appears to play an important role in determining the ABA levels in dry seeds. Gene involved in postgermination growth. Overexpression of CYP707A1 leads to a decrease in ABA levels and a reduction in after-ripening period to break dormancy.  go_component endomembrane system|GO:0012505||IEA  go_process response to desiccation|GO:0009269|15064374|IEP  go_process response to red or far red light|GO:0009639|17010113|IEP  go_process abscisic acid metabolic process|GO:0009687|16543410|IMP  go_process response to abscisic acid stimulus|GO:0009737|15064374|IEP  go_process drought recovery|GO:0009819|15044947|IEP  go_process release of seed from dormancy|GO:0048838|16507085|IMP  go_function (+)-abscisic acid 8 -hydroxylase activity|GO:0010295|15064374|IDA  go_function oxygen binding|GO:0019825||ISS  product CYP707A1; (+)-abscisic acid 8 -hydroxylase/ oxygen binding  note CYP707A1; FUNCTIONS IN: oxygen binding, (+)-abscisic acid 8 -hydroxylase activity; INVOLVED IN: in 6 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP707A3; (+)-abscisic acid 8 -hydroxylase/ oxygen binding (TAIR:AT5G45340.1); Has 25637 Blast hits to 25575 proteins in 1379 species: Archae - 51; Bacteria - 4675; Metazoa - 10057; Fungi - 3989; Plants - 4985; Viruses - 6; Other Eukaryotes - 1874 (source: NCBI BLink).  protein_id AT4G19230.2p  transcript_id AT4G19230.2  protein_id AT4G19230.2p  transcript_id AT4G19230.2  
At4g19239	chr4:010527516	0.0	C/10527516-10527776	AT4G19239.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G01080; beta-galactosidase  
At4g19240	chr4:010529054	0.0	C/10529054-10529092,10527800-10528861	AT4G19240.1  CDS  gene_syn T5K18.20, T5K18_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43280.1); Has 17 Blast hits to 15 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G19240.1p  transcript_id AT4G19240.1  protein_id AT4G19240.1p  transcript_id AT4G19240.1  
At4g19250	chr4:010531504	0.0	W/10531504-10532190	AT4G19250.1  CDS  gene_syn T5K18.30, T5K18_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing protein  note kelch repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G19330.1); Has 589 Blast hits to 573 proteins in 61 species: Archae - 0; Bacteria - 9; Metazoa - 202; Fungi - 2; Plants - 366; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT4G19250.1p  transcript_id AT4G19250.1  protein_id AT4G19250.1p  transcript_id AT4G19250.1  
At4g19260	chr4:010533296	0.0	W/10533296-10533452,10533627-10533733,10533792-10533894,10534073-10534189,10534268-10534368,10534456-10534558,10536084-10536262	AT4G19260.1  CDS  gene_syn T5K18.40, T5K18_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing protein  note kelch repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19340.1); Has 213 Blast hits to 164 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 51; Plants - 78; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT4G19260.1p  transcript_id AT4G19260.1  protein_id AT4G19260.1p  transcript_id AT4G19260.1  
At4g19270	chr4:010537969	0.0	C/10537969-10538021,10537555-10537927	AT4G19270.1  CDS  gene_syn T5K18.50, T5K18_50  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50250.1); Has 13 Blast hits to 8 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G19270.1p  transcript_id AT4G19270.1  protein_id AT4G19270.1p  transcript_id AT4G19270.1  
At4g19280	chr4:010540040	0.0	C/10540040-10541502	AT4G19280.1  mRNA_TE_gene  pseudo  gene_syn T5K18.60, T5K18_60  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35080.1)  
At4g19290	chr4:010541543	0.0	C/10541543-10541967	AT4G19290.1  mRNA_TE_gene  pseudo  gene_syn T5K18.70, T5K18_70  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G36060.1)  
At4g19300	chr4:010542695	0.0	C/10542695-10543703	AT4G19300.1  mRNA_TE_gene  pseudo  gene_syn T5K18.80, T5K18_80  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G36050.1); similar to hypothetical protein 31.t00082 [Brassica oleracea] (GB:ABD65101.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At4g19305	chr4:010545252	0.0	W/10545252-10545710	AT4G19305.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35100.1)  
At4g19310	chr4:010547772	0.0	C/10547772-10549252	AT4G19310.1  mRNA_TE_gene  pseudo  gene_syn T5K18.90, T5K18_90  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G35110.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G28970.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G36030.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD65034.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At4g19320	chr4:010549348	0.0	C/10549348-10552972	AT4G19320.1  mRNA_TE_gene  pseudo  gene_syn T5K18.100, T5K18_100  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52087.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G35110.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G36020.1); similar to hypothetical protein 23.t00036 [Brassica oleracea] (GB:ABD65624.1)  
At4g19330	chr4:010554982	0.0	W/10554982-10555198,10555314-10555420,10555729-10555876,10555955-10556023,10557460-10558260,10558306-10558468,10558567-10558675	AT4G19330.1  CDS  gene_syn T5K18.110, T5K18_110  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing protein (TAIR:AT4G19250.1); Has 1333 Blast hits to 1214 proteins in 112 species: Archae - 8; Bacteria - 29; Metazoa - 637; Fungi - 18; Plants - 584; Viruses - 4; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT4G19330.1p  transcript_id AT4G19330.1  protein_id AT4G19330.1p  transcript_id AT4G19330.1  
At4g19340	chr4:010559610	0.0	W/10559610-10559766,10559942-10560048,10560107-10560209,10560388-10560504,10560583-10560683,10560771-10560884	AT4G19340.1  CDS  gene_syn T5K18.120, T5K18_120  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: kelch repeat-containing protein (TAIR:AT4G19260.1); Has 204 Blast hits to 159 proteins in 69 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 53; Plants - 67; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT4G19340.1p  transcript_id AT4G19340.1  protein_id AT4G19340.1p  transcript_id AT4G19340.1  
At4g19350	chr4:010563569	0.0	C/10563569-10563676,10563213-10563281,10563078-10563107,10562914-10562946,10562754-10562824,10562544-10562625,10562355-10562447,10562214-10562270	AT4G19350.1  CDS  gene_syn EMB3006, T5K18.130, T5K18_130, embryo defective 3006  gene EMB3006  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product EMB3006 (embryo defective 3006)  note embryo defective 3006 (EMB3006); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 22 Blast hits to 22 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 2; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G19350.1p  transcript_id AT4G19350.1  protein_id AT4G19350.1p  transcript_id AT4G19350.1  
At4g19360	chr4:010564159	0.0	W/10564159-10564339,10564435-10564535,10564625-10564825,10564933-10564965	AT4G19360.2  CDS  gene_syn T5K18.140, T5K18_140  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45330.1); Has 333 Blast hits to 323 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 148; Fungi - 84; Plants - 53; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT4G19360.2p  transcript_id AT4G19360.2  protein_id AT4G19360.2p  transcript_id AT4G19360.2  
At4g19360	chr4:010564159	0.0	W/10564159-10564339,10564435-10564535,10564625-10564981,10565139-10565234,10565335-10565406	AT4G19360.1  CDS  gene_syn T5K18.140, T5K18_140  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45330.1); Has 333 Blast hits to 323 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 148; Fungi - 84; Plants - 53; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT4G19360.1p  transcript_id AT4G19360.1  protein_id AT4G19360.1p  transcript_id AT4G19360.1  
At4g19370	chr4:010567446	0.0	C/10567446-10567535,10567166-10567377,10566263-10566614	AT4G19370.1  CDS  gene_syn T5K18.150, T5K18_150  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31720.1); Has 50 Blast hits to 50 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G19370.1p  transcript_id AT4G19370.1  protein_id AT4G19370.1p  transcript_id AT4G19370.1  
At4g19380	chr4:010572160	0.0	C/10572160-10572288,10570692-10570961,10568427-10570208	AT4G19380.1  CDS  gene_syn T5K18.160, T5K18_160  go_function oxidoreductase activity, acting on CH-OH group of donors|GO:0016614||IEA  go_function FAD binding|GO:0050660||IEA  go_component cellular_component|GO:0005575||ND  go_function electron carrier activity|GO:0009055||ISS  product alcohol oxidase-related  note alcohol oxidase-related; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867), Long-chain fatty alcohol dehydrogenase (InterPro:IPR012400); BEST Arabidopsis thaliana protein match is: alcohol oxidase-related (TAIR:AT4G28570.1); Has 2984 Blast hits to 2931 proteins in 546 species: Archae - 20; Bacteria - 1700; Metazoa - 92; Fungi - 173; Plants - 84; Viruses - 0; Other Eukaryotes - 915 (source: NCBI BLink).  protein_id AT4G19380.1p  transcript_id AT4G19380.1  protein_id AT4G19380.1p  transcript_id AT4G19380.1  
At4g19390	chr4:010576047	0.0	C/10576047-10576355,10575720-10575797,10575450-10575531,10575208-10575350,10574903-10575112	AT4G19390.1  CDS  gene_syn T5K18.170, T5K18_170  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP022348 (InterPro:IPR016804), Uncharacterised protein family UPF0114 (InterPro:IPR005134); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13720.1); Has 553 Blast hits to 553 proteins in 219 species: Archae - 18; Bacteria - 407; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT4G19390.1p  transcript_id AT4G19390.1  protein_id AT4G19390.1p  transcript_id AT4G19390.1  
At4g19395	chr4:010578652	0.0	W/10578652-10578755	AT4G19395.1  miRNA  gene_syn MICRORNA 168, MICRORNA 168A, MIR168, MIR168A  gene MIR168A  function Encodes a microRNA that targets AGO1. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCGCUUGGUGCAGGUCGGGAA  go_component cellular_component|GO:0005575||ND  go_process gene silencing by miRNA|GO:0035195|15200956|TAS  go_function molecular_function|GO:0003674||ND  product MIR168A (MICRORNA 168A); miRNA  transcript_id AT4G19395.1  
At4g19400	chr4:010581843	0.0	C/10581843-10581909,10581639-10581708,10581401-10581510,10581204-10581318,10581037-10581121	AT4G19400.1  CDS  gene_syn T5K18.180, T5K18_180  go_component actin cytoskeleton|GO:0015629||IEA  go_process cytoskeleton organization|GO:0007010||IEA  go_function actin binding|GO:0003779||IEA  product actin binding  note actin binding; FUNCTIONS IN: actin binding; INVOLVED IN: cytoskeleton organization; LOCATED IN: actin cytoskeleton; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Profilin/allergen (InterPro:IPR002097); Has 17 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G19400.1p  transcript_id AT4G19400.1  protein_id AT4G19400.1p  transcript_id AT4G19400.1  
At4g19410	chr4:010584655	0.0	C/10584655-10584766,10584450-10584532,10584027-10584156,10583825-10583904,10583601-10583687,10583391-10583515,10583161-10583221,10583013-10583066,10582836-10582913,10582628-10582733,10582380-10582525,10582188-10582301	AT4G19410.1  CDS  gene_syn T5K18.190, T5K18_190  go_component cell wall|GO:0005618|14595688|IDA  go_component cell wall|GO:0005618|16287169|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process biological_process|GO:0008150||ND  go_function carboxylesterase activity|GO:0004091||ISS  product pectinacetylesterase, putative  note pectinacetylesterase, putative; FUNCTIONS IN: carboxylesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, membrane, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pectinacetylesterase (InterPro:IPR004963); BEST Arabidopsis thaliana protein match is: pectinacetylesterase, putative (TAIR:AT5G45280.2); Has 403 Blast hits to 397 proteins in 75 species: Archae - 2; Bacteria - 28; Metazoa - 113; Fungi - 0; Plants - 158; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).  protein_id AT4G19410.1p  transcript_id AT4G19410.1  protein_id AT4G19410.1p  transcript_id AT4G19410.1  
At4g19420	chr4:010589511	0.0	C/10589511-10589612,10589244-10589373,10589072-10589151,10588906-10588992,10588681-10588805,10588525-10588585,10588378-10588431,10588211-10588288,10587986-10588091,10587738-10587883,10587504-10587632	AT4G19420.2  CDS  gene_syn T5K18.200, T5K18_200  go_process biological_process|GO:0008150||ND  go_function carboxylesterase activity|GO:0004091||ISS  product pectinacetylesterase family protein  note pectinacetylesterase family protein; FUNCTIONS IN: carboxylesterase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinacetylesterase (InterPro:IPR004963); BEST Arabidopsis thaliana protein match is: pectinacetylesterase, putative (TAIR:AT4G19410.1); Has 393 Blast hits to 388 proteins in 81 species: Archae - 2; Bacteria - 38; Metazoa - 114; Fungi - 0; Plants - 159; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT4G19420.2p  transcript_id AT4G19420.2  protein_id AT4G19420.2p  transcript_id AT4G19420.2  
At4g19420	chr4:010589693	0.0	C/10589693-10589807,10589511-10589593,10589244-10589373,10589072-10589151,10588906-10588992,10588681-10588805,10588525-10588585,10588378-10588431,10588211-10588288,10587986-10588091,10587738-10587883,10587504-10587632	AT4G19420.1  CDS  gene_syn T5K18.200, T5K18_200  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function carboxylesterase activity|GO:0004091||ISS  product pectinacetylesterase family protein  note pectinacetylesterase family protein; FUNCTIONS IN: carboxylesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinacetylesterase (InterPro:IPR004963); BEST Arabidopsis thaliana protein match is: pectinacetylesterase, putative (TAIR:AT4G19410.1); Has 401 Blast hits to 396 proteins in 86 species: Archae - 2; Bacteria - 40; Metazoa - 114; Fungi - 0; Plants - 161; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT4G19420.1p  transcript_id AT4G19420.1  protein_id AT4G19420.1p  transcript_id AT4G19420.1  
At4g19430	chr4:010598606	0.0	C/10598606-10599088	AT4G19430.1  CDS  gene_syn T5K18.210, T5K18_210  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G19430.1p  transcript_id AT4G19430.1  protein_id AT4G19430.1p  transcript_id AT4G19430.1  
At4g19440	chr4:010602006	0.0	C/10602006-10604483	AT4G19440.1  CDS  gene_syn T5K18.220, T5K18_220  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G22470.1); Has 30816 Blast hits to 6246 proteins in 184 species: Archae - 5; Bacteria - 26; Metazoa - 1061; Fungi - 928; Plants - 27100; Viruses - 0; Other Eukaryotes - 1696 (source: NCBI BLink).  protein_id AT4G19440.1p  transcript_id AT4G19440.1  protein_id AT4G19440.1p  transcript_id AT4G19440.1  
At4g19450	chr4:010606538	0.0	W/10606538-10606846,10607736-10608667,10608741-10609218	AT4G19450.1  CDS  gene_syn T5K18.230, T5K18_230  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product nodulin-related  note nodulin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45275.1); Has 741 Blast hits to 716 proteins in 154 species: Archae - 15; Bacteria - 148; Metazoa - 7; Fungi - 113; Plants - 313; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink).  protein_id AT4G19450.1p  transcript_id AT4G19450.1  protein_id AT4G19450.1p  transcript_id AT4G19450.1  
At4g19452	chr4:010609555	0.0	C/10609555-10610200	AT4G19452.1  pseudogenic_transcript  pseudo  function pseudogene of F-box family protein  
At4g19460	chr4:010610422	0.0	C/10610422-10611972	AT4G19460.1  CDS  gene_syn F24J7.20, F24J7_20  go_process biosynthetic process|GO:0009058||IEA  go_component cellular_component|GO:0005575||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyl transferase family 1 protein  note glycosyl transferase family 1 protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: glycosyl transferase family 1 protein (TAIR:AT1G73160.1); Has 8459 Blast hits to 8455 proteins in 1224 species: Archae - 402; Bacteria - 5966; Metazoa - 68; Fungi - 63; Plants - 88; Viruses - 0; Other Eukaryotes - 1872 (source: NCBI BLink).  protein_id AT4G19460.1p  transcript_id AT4G19460.1  protein_id AT4G19460.1p  transcript_id AT4G19460.1  
At4g19470	chr4:010614243	0.0	C/10614243-10614339,10613791-10614200,10612993-10613739	AT4G19470.1  CDS  gene_syn F24J7.30, F24J7_30  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product disease resistance protein-related  note disease resistance protein-related; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G19510.1); Has 1940 Blast hits to 1384 proteins in 65 species: Archae - 0; Bacteria - 59; Metazoa - 124; Fungi - 4; Plants - 1730; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT4G19470.1p  transcript_id AT4G19470.1  protein_id AT4G19470.1p  transcript_id AT4G19470.1  
At4g19480	chr4:010615184	0.0	C/10615184-10615316,10614780-10615033	AT4G19480.1  CDS  gene_syn F24J7.40, F24J7_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G19480.1p  transcript_id AT4G19480.1  protein_id AT4G19480.1p  transcript_id AT4G19480.1  
At4g19490	chr4:010616017	0.0	W/10616017-10616850,10616950-10617012,10617102-10617181,10617908-10617937,10618049-10618169,10618288-10618362,10618565-10618718,10619102-10619220,10619435-10619691,10619805-10619976,10620061-10620144,10620457-10620857,10621054-10621207,10621450-10621531,10621826-10621905,10622092-10622253,10622326-10622393,10622631-10622711,10622787-10622934	AT4G19490.2  CDS  gene_syn ARABIDOPSIS THALIANA VPS54 HOMOLOG, ATVPS54, F24J7.50, F24J7_50, VPS54  gene VPS54  function Putative homolog of yeast Vps54. Thought to associate with POK and ATVPS53 in a plant GARP-like complex involved in the membrane trafficking system.  go_component chloroplast|GO:0009507|15028209|IDA  go_process retrograde transport, endosome to Golgi|GO:0042147||IEA  go_function protein binding|GO:0005515||IEA  product protein binding  note VPS54; FUNCTIONS IN: protein binding; INVOLVED IN: retrograde transport, endosome to Golgi; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Vps54-like (InterPro:IPR012501); Has 338 Blast hits to 270 proteins in 113 species: Archae - 0; Bacteria - 4; Metazoa - 144; Fungi - 119; Plants - 23; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT4G19490.2p  transcript_id AT4G19490.2  protein_id AT4G19490.2p  transcript_id AT4G19490.2  
At4g19490	chr4:010616017	0.0	W/10616017-10616850,10616950-10617012,10617102-10617181,10618049-10618169,10618288-10618362,10618565-10618718,10619102-10619220,10619435-10619691,10619805-10619976,10620061-10620144,10620457-10620857,10621054-10621207,10621450-10621531,10621826-10621905,10622092-10622253,10622326-10622393,10622631-10622711,10622787-10622934	AT4G19490.1  CDS  gene_syn ARABIDOPSIS THALIANA VPS54 HOMOLOG, ATVPS54, F24J7.50, F24J7_50, VPS54  gene VPS54  function Putative homolog of yeast Vps54. Thought to associate with POK and ATVPS53 in a plant GARP-like complex involved in the membrane trafficking system.  go_component chloroplast|GO:0009507|15028209|IDA  go_process retrograde transport, endosome to Golgi|GO:0042147||IEA  go_function protein binding|GO:0005515||IEA  product protein binding  note VPS54; FUNCTIONS IN: protein binding; INVOLVED IN: retrograde transport, endosome to Golgi; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Vps54-like (InterPro:IPR012501); Has 345 Blast hits to 277 proteins in 117 species: Archae - 2; Bacteria - 6; Metazoa - 151; Fungi - 115; Plants - 23; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT4G19490.1p  transcript_id AT4G19490.1  protein_id AT4G19490.1p  transcript_id AT4G19490.1  
At4g19500	chr4:010625787	0.0	W/10625787-10626250,10626345-10628039,10628162-10629200,10629317-10629613,10629706-10630140	AT4G19500.1  CDS  gene_syn F24J7.60, F24J7_60  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor  note ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor; FUNCTIONS IN: protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat 3 (InterPro:IPR011713), Toll-Interleukin receptor (InterPro:IPR000157), Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: SNC1 (SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1); nucleotide binding (TAIR:AT4G16890.1); Has 13999 Blast hits to 8175 proteins in 320 species: Archae - 7; Bacteria - 332; Metazoa - 274; Fungi - 32; Plants - 12934; Viruses - 4; Other Eukaryotes - 416 (source: NCBI BLink).  protein_id AT4G19500.1p  transcript_id AT4G19500.1  protein_id AT4G19500.1p  transcript_id AT4G19500.1  
At4g19510	chr4:010633685	0.0	W/10633685-10634292,10634434-10635276,10635388-10635517,10635610-10635921,10636014-10637063,10637152-10637841	AT4G19510.1  CDS  gene_syn F24J7.70, F24J7_70  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, protein binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat 3 (InterPro:IPR011713), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G12010.1); Has 12646 Blast hits to 9374 proteins in 372 species: Archae - 8; Bacteria - 481; Metazoa - 568; Fungi - 15; Plants - 11055; Viruses - 0; Other Eukaryotes - 519 (source: NCBI BLink).  protein_id AT4G19510.1p  transcript_id AT4G19510.1  protein_id AT4G19510.1p  transcript_id AT4G19510.1  
At4g19510	chr4:010633805	0.0	W/10633805-10634292,10634434-10635517,10635610-10635921,10636014-10636625,10636863-10637063,10637152-10637272,10637510-10637841	AT4G19510.2  CDS  gene_syn F24J7.70, F24J7_70  go_component endomembrane system|GO:0012505||IEA  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane, endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat 3 (InterPro:IPR011713), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G12010.1); Has 12646 Blast hits to 9374 proteins in 372 species: Archae - 8; Bacteria - 481; Metazoa - 568; Fungi - 15; Plants - 11055; Viruses - 0; Other Eukaryotes - 519 (source: NCBI BLink).  protein_id AT4G19510.2p  transcript_id AT4G19510.2  protein_id AT4G19510.2p  transcript_id AT4G19510.2  
At4g19512	chr4:010639488	0.0	C/10639488-10639703	AT4G19512.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G19512.1p  transcript_id AT4G19512.1  protein_id AT4G19512.1p  transcript_id AT4G19512.1  
At4g19515	chr4:010641003	0.0	C/10641003-10642195,10640524-10640905	AT4G19515.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_component membrane|GO:0016020||ISS  go_function transmembrane receptor activity|GO:0004888||ISS  product disease resistance family protein  note disease resistance family protein; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, innate immune response; LOCATED IN: intrinsic to membrane, endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: TTR1; protein binding / transcription factor (TAIR:AT5G45050.2); Has 981 Blast hits to 805 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 981; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G19515.1p  transcript_id AT4G19515.1  protein_id AT4G19515.1p  transcript_id AT4G19515.1  
At4g19520	chr4:010646631	0.0	C/10646631-10647070,10644948-10646010,10644539-10644835,10642658-10644247	AT4G19520.1  CDS  gene_syn F24J7.80, F24J7_80  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, protein binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat 3 (InterPro:IPR011713), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: ATP binding / protein binding / transmembrane receptor (TAIR:AT3G51560.1); Has 24868 Blast hits to 14938 proteins in 607 species: Archae - 15; Bacteria - 1418; Metazoa - 4880; Fungi - 241; Plants - 17262; Viruses - 8; Other Eukaryotes - 1044 (source: NCBI BLink).  protein_id AT4G19520.1p  transcript_id AT4G19520.1  protein_id AT4G19520.1p  transcript_id AT4G19520.1  
At4g19530	chr4:010651962	0.0	W/10651962-10652431,10653707-10654904,10655001-10655318,10655422-10656246,10656398-10657090	AT4G19530.1  CDS  gene_syn F24J7.90, F24J7_90  function Encodes a TIR-NB-LRR resistance protein. Transient expression in tobacco induces cell death.  go_component intrinsic to membrane|GO:0031224||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  go_process defense response signaling pathway, resistance gene-dependent|GO:0009870|19132868|IDA  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: protein binding, transmembrane receptor activity, ATP binding; INVOLVED IN: defense response signaling pathway, resistance gene-dependent, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: RPS4 (RESISTANT TO P. SYRINGAE 4); receptor (TAIR:AT5G45250.1); Has 12681 Blast hits to 8577 proteins in 399 species: Archae - 6; Bacteria - 727; Metazoa - 1515; Fungi - 64; Plants - 9698; Viruses - 2; Other Eukaryotes - 669 (source: NCBI BLink).  protein_id AT4G19530.1p  transcript_id AT4G19530.1  protein_id AT4G19530.1p  transcript_id AT4G19530.1  
At4g19540	chr4:010657517	0.0	W/10657517-10657591,10657680-10657788,10657893-10658015,10658105-10658202,10658293-10658419,10658499-10658584,10658671-10658796,10658897-10659094	AT4G19540.1  CDS  gene_syn F24J7.100, F24J7_100, IND1(IRON-SULFUR PROTEIN REQUIRED FOR NADH DEHYDROGENASE)-LIKE, INDL  gene INDL  go_component mitochondrion|GO:0005739||IEA  product INDL (IND1(IRON-SULFUR PROTEIN REQUIRED FOR NADH DEHYDROGENASE)-LIKE)  note IND1(IRON-SULFUR PROTEIN REQUIRED FOR NADH DEHYDROGENASE)-LIKE (INDL); LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: HCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101); ATP binding (TAIR:AT3G24430.1); Has 9217 Blast hits to 9199 proteins in 1435 species: Archae - 352; Bacteria - 4208; Metazoa - 319; Fungi - 279; Plants - 117; Viruses - 0; Other Eukaryotes - 3942 (source: NCBI BLink).  protein_id AT4G19540.1p  transcript_id AT4G19540.1  protein_id AT4G19540.1p  transcript_id AT4G19540.1  
At4g19550	chr4:010661168	0.0	C/10661168-10661170,10660862-10660916,10660686-10660753,10660256-10660336,10660029-10660145,10659825-10659875,10659414-10659677	AT4G19550.1  CDS  gene_syn F24J7.110, F24J7_110  go_component transcription factor complex|GO:0005667||IEA  go_process transcription initiation|GO:0006352||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function transcription regulator activity|GO:0030528||IEA  product transcription regulator/ zinc ion binding  note transcription regulator/ zinc ion binding; FUNCTIONS IN: transcription regulator activity, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent, transcription initiation; LOCATED IN: transcription factor complex; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812); BEST Arabidopsis thaliana protein match is: RNA polymerase II transcription factor/ protein binding / transcription activator/ transcription regulator/ translation initiation factor/ zinc ion binding (TAIR:AT3G09360.1); Has 908 Blast hits to 804 proteins in 118 species: Archae - 0; Bacteria - 54; Metazoa - 306; Fungi - 55; Plants - 56; Viruses - 13; Other Eukaryotes - 424 (source: NCBI BLink).  protein_id AT4G19550.1p  transcript_id AT4G19550.1  protein_id AT4G19550.1p  transcript_id AT4G19550.1  
At4g19560	chr4:010661904	0.0	W/10661904-10662124,10662497-10662578,10662970-10663095,10663227-10663408,10663506-10663654,10663747-10664369	AT4G19560.1  CDS  gene_syn CYCT1;2, F24J7.120, F24J7_120  gene CYCT1;2  go_component cellular_component|GO:0005575||ND  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase activity|GO:0004693||ISS  product CYCT1;2; cyclin-dependent protein kinase  note CYCT1;2; FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like (InterPro:IPR011028), Transcription regulator cyclin (InterPro:IPR015429), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCT1;4; cyclin-dependent protein kinase (TAIR:AT4G19600.1); Has 1856 Blast hits to 1855 proteins in 191 species: Archae - 1; Bacteria - 2; Metazoa - 1187; Fungi - 285; Plants - 205; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).  protein_id AT4G19560.1p  transcript_id AT4G19560.1  protein_id AT4G19560.1p  transcript_id AT4G19560.1  
At4g19570	chr4:010665516	0.0	W/10665516-10667192	AT4G19570.1  CDS  gene_syn F24J7.130, F24J7_130  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT4G19590.1); Has 16486 Blast hits to 15556 proteins in 1936 species: Archae - 107; Bacteria - 5177; Metazoa - 3389; Fungi - 1375; Plants - 1777; Viruses - 148; Other Eukaryotes - 4513 (source: NCBI BLink).  protein_id AT4G19570.1p  transcript_id AT4G19570.1  protein_id AT4G19570.1p  transcript_id AT4G19570.1  
At4g19580	chr4:010668400	0.0	W/10668400-10668744,10668835-10669183,10669241-10669452	AT4G19580.1  CDS  gene_syn F24J7.140, F24J7_140  go_function heat shock protein binding|GO:0031072||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product heat shock protein binding  note heat shock protein binding; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT4G19570.1); Has 9534 Blast hits to 9528 proteins in 1627 species: Archae - 65; Bacteria - 3620; Metazoa - 2150; Fungi - 629; Plants - 574; Viruses - 8; Other Eukaryotes - 2488 (source: NCBI BLink).  protein_id AT4G19580.1p  transcript_id AT4G19580.1  protein_id AT4G19580.1p  transcript_id AT4G19580.1  
At4g19590	chr4:010671199	0.0	W/10671199-10671876,10671931-10672290	AT4G19590.1  CDS  gene_syn F24J7.150, F24J7_150  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT4G19570.1); Has 29368 Blast hits to 20769 proteins in 2040 species: Archae - 89; Bacteria - 6162; Metazoa - 7595; Fungi - 2517; Plants - 2894; Viruses - 367; Other Eukaryotes - 9744 (source: NCBI BLink).  protein_id AT4G19590.1p  transcript_id AT4G19590.1  protein_id AT4G19590.1p  transcript_id AT4G19590.1  
At4g19600	chr4:010673619	0.0	W/10673619-10673845,10674300-10674381,10674772-10674906,10675143-10675318,10675407-10675558,10675679-10676532	AT4G19600.1  CDS  gene_syn CYCT1;4, F24J7.161, F24J7_161  gene CYCT1;4  function Encodes a cyclin T partner CYCT1;4. Plays important roles in infection with Cauliflower mosaic virus (CaMV).  go_process response to virus|GO:0009615|17468259|IEP  go_process trichome morphogenesis|GO:0010090|17468259|IMP  go_process leaf development|GO:0048366|17468259|IGI  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase activity|GO:0004693||ISS  product CYCT1;4; cyclin-dependent protein kinase  note CYCT1;4; FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle, response to virus, leaf development, trichome morphogenesis; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like (InterPro:IPR011028), Transcription regulator cyclin (InterPro:IPR015429), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: cyclin family protein (TAIR:AT5G45190.1); Has 1836 Blast hits to 1808 proteins in 206 species: Archae - 2; Bacteria - 17; Metazoa - 997; Fungi - 364; Plants - 192; Viruses - 0; Other Eukaryotes - 264 (source: NCBI BLink).  protein_id AT4G19600.1p  transcript_id AT4G19600.1  protein_id AT4G19600.1p  transcript_id AT4G19600.1  
At4g19610	chr4:010677482	0.0	W/10677482-10677483,10677568-10677675,10677788-10677902,10677985-10678676,10678778-10678909,10679045-10679134,10679233-10679350,10679442-10679765,10679853-10679917,10680082-10680235,10680548-10680652,10680734-10680835,10680923-10681096,10681275-10681409,10681489-10681623	AT4G19610.1  CDS  gene_syn F24J7.162, F24J7_162  go_component nucleolus|GO:0005730|15496452|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA binding / nucleic acid binding / nucleotide binding  note RNA binding / nucleic acid binding / nucleotide binding; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, region 1 (InterPro:IPR003954); BEST Arabidopsis thaliana protein match is: nucleic acid binding / nucleotide binding (TAIR:AT5G08695.1); Has 30137 Blast hits to 16428 proteins in 647 species: Archae - 20; Bacteria - 1522; Metazoa - 16678; Fungi - 3837; Plants - 4494; Viruses - 11; Other Eukaryotes - 3575 (source: NCBI BLink).  protein_id AT4G19610.1p  transcript_id AT4G19610.1  protein_id AT4G19610.1p  transcript_id AT4G19610.1  
At4g19620	chr4:010682680	0.0	C/10682680-10682844,10682433-10682609	AT4G19620.1  CDS  gene_syn F24J7.170, F24J7_170  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G19620.1p  transcript_id AT4G19620.1  protein_id AT4G19620.1p  transcript_id AT4G19620.1  
At4g19630	chr4:010684405	0.0	C/10684405-10684614,10684126-10684311	AT4G19630.1  CDS  gene_syn F24J7.180, F24J7_180  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product heat shock factor protein-related / heat shock transcription factor-related  note heat shock factor protein-related / heat shock transcription factor-related; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: AT-HSFA4A; DNA binding / transcription factor (TAIR:AT4G18880.1); Has 747 Blast hits to 744 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 202; Fungi - 83; Plants - 407; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT4G19630.1p  transcript_id AT4G19630.1  protein_id AT4G19630.1p  transcript_id AT4G19630.1  
At4g19633	chr4:010685517	0.0	C/10685517-10685997	AT4G19633.1  pseudogenic_transcript  pseudo  function pseudogene of heat shock factor related protein  
At4g19640	chr4:010689411	0.0	C/10689411-10689449,10688989-10689066,10688738-10688905,10688603-10688651,10688405-10688478,10687634-10687727,10687441-10687541	AT4G19640.1  CDS  gene_syn ARA-7, ARA7, ARABIDOPSIS RAB GTPASE HOMOLOG F2B, ATRAB-F2B, ATRAB5B, ATRABF2B, F24J7.190, F24J7_190, RAB GTPASE HOMOLOG F2B, RAB-F2B, RABF2B  gene ARA7  function Encodes Ara7.  go_component plasma membrane|GO:0005886|17644812|IDA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product ARA7; GTP binding  note ARA7; FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab5-related (InterPro:IPR015599); BEST Arabidopsis thaliana protein match is: RHA1 (RAB HOMOLOG 1); GTP binding (TAIR:AT5G45130.1); Has 21152 Blast hits to 21125 proteins in 588 species: Archae - 19; Bacteria - 100; Metazoa - 11808; Fungi - 2497; Plants - 1845; Viruses - 19; Other Eukaryotes - 4864 (source: NCBI BLink).  protein_id AT4G19640.1p  transcript_id AT4G19640.1  protein_id AT4G19640.1p  transcript_id AT4G19640.1  
At4g19645	chr4:010691185	0.0	C/10691185-10691298,10691009-10691097,10690798-10690939,10690627-10690701,10690362-10690559,10690217-10690276,10689941-10690069	AT4G19645.1  CDS  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31300.2); Has 401 Blast hits to 401 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 186; Fungi - 102; Plants - 84; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT4G19645.1p  transcript_id AT4G19645.1  protein_id AT4G19645.1p  transcript_id AT4G19645.1  
At4g19645	chr4:010691185	0.0	C/10691185-10691298,10691009-10691097,10690798-10690939,10690627-10690701,10690362-10690559,10690217-10690276,10689941-10690069	AT4G19645.2  CDS  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31300.2); Has 401 Blast hits to 401 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 186; Fungi - 102; Plants - 84; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT4G19645.2p  transcript_id AT4G19645.2  protein_id AT4G19645.2p  transcript_id AT4G19645.2  
At4g19650	chr4:010691674	0.0	W/10691674-10691760,10693382-10693497,10693541-10693605,10693707-10695166	AT4G19650.1  CDS  gene_syn T16H5.10, T16H5_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: mitochondrial transcription termination factor-related / mTERF-related (TAIR:AT5G45113.1); Has 110 Blast hits to 107 proteins in 9 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G19650.1p  transcript_id AT4G19650.1  protein_id AT4G19650.1p  transcript_id AT4G19650.1  
At4g19660	chr4:010697725	0.0	C/10697725-10698243,10696895-10697633,10696607-10696813,10696266-10696525	AT4G19660.1  CDS  gene_syn NPR1-like protein 4, NPR4, T16H5.20, T16H5_20  gene NPR4  function Encodes a ankyrin repeat BTB/POZ domain-containing protein with 36% sequence identity with NPR1. Mutants are more susceptible to the bacterial pathogen Pseudomonas syringe pv. tomato DC3000 and to the fungal pathogen Erysiphe cichoracearum, but do not differ markedly from wild type in interaction with virulent and avirulent strains of the oomycete Peronospora parasitica. NPR4 is required for basal defense against pathogens, and may be implicated in the cross-talk between the SA- and JA-dependent signaling pathways.  go_component nucleus|GO:0005634|15634206|IDA  go_process response to bacterium|GO:0009617|15634206|IEP  go_process response to bacterium|GO:0009617|15634206|IMP  go_process response to fungus|GO:0009620|15634206|IMP  go_process defense response to bacterium, incompatible interaction|GO:0009816|17076807|IMP  go_process defense response to fungus, incompatible interaction|GO:0009817|17076807|IMP  go_function protein binding|GO:0005515|15634206|IPI  go_function protein binding|GO:0005515||ISS  product NPR4 (NPR1-like protein 4); protein binding  note NPR1-like protein 4 (NPR4); FUNCTIONS IN: protein binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response to bacterium, incompatible interaction, response to fungus, response to bacterium; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: NPR3 (NPR1-LIKE PROTEIN 3); protein binding (TAIR:AT5G45110.1); Has 1546 Blast hits to 1417 proteins in 145 species: Archae - 0; Bacteria - 97; Metazoa - 461; Fungi - 46; Plants - 551; Viruses - 2; Other Eukaryotes - 389 (source: NCBI BLink).  protein_id AT4G19660.1p  transcript_id AT4G19660.1  protein_id AT4G19660.1p  transcript_id AT4G19660.1  
At4g19670	chr4:010700920	0.0	C/10700920-10701342,10700051-10700817,10699383-10699791	AT4G19670.1  CDS  gene_syn T16H5.30, T16H5_30  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G60250.1); Has 2584 Blast hits to 2568 proteins in 159 species: Archae - 0; Bacteria - 4; Metazoa - 1133; Fungi - 416; Plants - 604; Viruses - 0; Other Eukaryotes - 427 (source: NCBI BLink).  protein_id AT4G19670.1p  transcript_id AT4G19670.1  protein_id AT4G19670.1p  transcript_id AT4G19670.1  
At4g19670	chr4:010700920	0.0	C/10700920-10701342,10700051-10700817,10699383-10699791	AT4G19670.2  CDS  gene_syn T16H5.30, T16H5_30  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G60250.1); Has 2584 Blast hits to 2568 proteins in 159 species: Archae - 0; Bacteria - 4; Metazoa - 1133; Fungi - 416; Plants - 604; Viruses - 0; Other Eukaryotes - 427 (source: NCBI BLink).  protein_id AT4G19670.2p  transcript_id AT4G19670.2  protein_id AT4G19670.2p  transcript_id AT4G19670.2  
At4g19680	chr4:010703385	0.0	W/10703385-10703981,10704079-10704228,10704316-10704621	AT4G19680.2  CDS  gene_syn IRT2, T16H5.40, T16H5_40  gene IRT2  function encodes an iron transporter whose expression is induced by iron and zinc deficiency. Gene is specifically expressed in the external cell layers of the root subapical zone.  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process iron ion transport|GO:0006826|11500563|TAS  go_process zinc ion transport|GO:0006829|11500563|TAS  go_process zinc ion transport|GO:0006829||ISS  go_process cellular response to iron ion starvation|GO:0010106|11389759|IEP  go_function iron ion transmembrane transporter activity|GO:0005381|11389759|IGI  go_function iron ion transmembrane transporter activity|GO:0005381|11500563|TAS  go_function zinc ion transmembrane transporter activity|GO:0005385|11500563|TAS  go_function zinc ion transmembrane transporter activity|GO:0005385||ISS  product IRT2; iron ion transmembrane transporter/ zinc ion transmembrane transporter  note IRT2; FUNCTIONS IN: zinc ion transmembrane transporter activity, iron ion transmembrane transporter activity; INVOLVED IN: zinc ion transport, cellular response to iron ion starvation, iron ion transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: root epidermis; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal and plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: IRT1 (iron-regulated transporter 1); cadmium ion transmembrane transporter/ copper uptake transmembrane transporter/ iron ion transmembrane transporter/ manganese ion transmembrane transporter/ zinc ion transmembrane transporter (TAIR:AT4G19690.2); Has 1291 Blast hits to 1204 proteins in 213 species: Archae - 0; Bacteria - 114; Metazoa - 319; Fungi - 403; Plants - 313; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink).  protein_id AT4G19680.2p  transcript_id AT4G19680.2  protein_id AT4G19680.2p  transcript_id AT4G19680.2  
At4g19680	chr4:010703385	0.0	W/10703385-10703981,10704079-10704255	AT4G19680.1  CDS  gene_syn IRT2, T16H5.40, T16H5_40  gene IRT2  function encodes an iron transporter whose expression is induced by iron and zinc deficiency. Gene is specifically expressed in the external cell layers of the root subapical zone.  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process iron ion transport|GO:0006826|11500563|TAS  go_process zinc ion transport|GO:0006829|11500563|TAS  go_process zinc ion transport|GO:0006829||ISS  go_process cellular response to iron ion starvation|GO:0010106|11389759|IEP  go_function iron ion transmembrane transporter activity|GO:0005381|11389759|IGI  go_function iron ion transmembrane transporter activity|GO:0005381|11500563|TAS  go_function zinc ion transmembrane transporter activity|GO:0005385|11500563|TAS  go_function zinc ion transmembrane transporter activity|GO:0005385||ISS  product IRT2; iron ion transmembrane transporter/ zinc ion transmembrane transporter  note IRT2; FUNCTIONS IN: zinc ion transmembrane transporter activity, iron ion transmembrane transporter activity; INVOLVED IN: zinc ion transport, cellular response to iron ion starvation, iron ion transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: root epidermis; CONTAINS InterPro DOMAIN/s: TonB box, conserved site (InterPro:IPR010916), Zinc/iron permease, fungal and plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: IRT1 (iron-regulated transporter 1); cadmium ion transmembrane transporter/ copper uptake transmembrane transporter/ iron ion transmembrane transporter/ manganese ion transmembrane transporter/ zinc ion transmembrane transporter (TAIR:AT4G19690.2); Has 928 Blast hits to 844 proteins in 135 species: Archae - 0; Bacteria - 8; Metazoa - 160; Fungi - 378; Plants - 297; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT4G19680.1p  transcript_id AT4G19680.1  protein_id AT4G19680.1p  transcript_id AT4G19680.1  
At4g19690	chr4:010707487	0.0	W/10707487-10708074,10708170-10708319,10708418-10708723	AT4G19690.2  CDS  gene_syn IRT1, T16H5.50, T16H5_50, iron-regulated transporter 1  gene IRT1  function Fe(II) transport protein (IRT1)  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process iron ion transport|GO:0006826|11500563|TAS  go_process manganese ion transport|GO:0006828|11500563|TAS  go_process zinc ion transport|GO:0006829|11500563|TAS  go_process cellular iron ion homeostasis|GO:0006879|12207649|IMP  go_process hyperosmotic response|GO:0006972|18397377|IEP  go_process response to bacterium|GO:0009617|19121106|IEP  go_process response to auxin stimulus|GO:0009733|18397377|IEP  go_process response to cytokinin stimulus|GO:0009735|18397377|IEP  go_process response to abscisic acid stimulus|GO:0009737|18397377|IEP  go_process cellular response to iron ion starvation|GO:0010106|16813577|IEP  go_process cadmium ion transport|GO:0015691|11500563|TAS  go_function iron ion transmembrane transporter activity|GO:0005381|10394943|TAS  go_function iron ion transmembrane transporter activity|GO:0005381|11500563|TAS  go_function iron ion transmembrane transporter activity|GO:0005381|17337631|IGI  go_function manganese ion transmembrane transporter activity|GO:0005384|11500563|TAS  go_function zinc ion transmembrane transporter activity|GO:0005385|11500563|TAS  go_function cadmium ion transmembrane transporter activity|GO:0015086|11500563|TAS  go_function copper uptake transmembrane transporter activity|GO:0015088|17337631|IGI  product IRT1 (iron-regulated transporter 1); cadmium ion transmembrane transporter/ copper uptake transmembrane transporter/ iron ion transmembrane transporter/ manganese ion transmembrane transporter/ zinc ion transmembrane transporter  note iron-regulated transporter 1 (IRT1); FUNCTIONS IN: manganese ion transmembrane transporter activity, zinc ion transmembrane transporter activity, cadmium ion transmembrane transporter activity, copper uptake transmembrane transporter activity, iron ion transmembrane transporter activity; INVOLVED IN: in 11 processes; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal and plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: IRT2; iron ion transmembrane transporter/ zinc ion transmembrane transporter (TAIR:AT4G19680.2); Has 1596 Blast hits to 1482 proteins in 239 species: Archae - 4; Bacteria - 147; Metazoa - 508; Fungi - 434; Plants - 320; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink).  protein_id AT4G19690.2p  transcript_id AT4G19690.2  protein_id AT4G19690.2p  transcript_id AT4G19690.2  
At4g19690	chr4:010707487	0.0	W/10707487-10708122	AT4G19690.1  CDS  gene_syn IRT1, T16H5.50, T16H5_50, iron-regulated transporter 1  gene IRT1  function Fe(II) transport protein (IRT1)  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process iron ion transport|GO:0006826|11500563|TAS  go_process manganese ion transport|GO:0006828|11500563|TAS  go_process zinc ion transport|GO:0006829|11500563|TAS  go_process cellular iron ion homeostasis|GO:0006879|12207649|IMP  go_process hyperosmotic response|GO:0006972|18397377|IEP  go_process response to bacterium|GO:0009617|19121106|IEP  go_process response to auxin stimulus|GO:0009733|18397377|IEP  go_process response to cytokinin stimulus|GO:0009735|18397377|IEP  go_process response to abscisic acid stimulus|GO:0009737|18397377|IEP  go_process cellular response to iron ion starvation|GO:0010106|16813577|IEP  go_process cadmium ion transport|GO:0015691|11500563|TAS  go_function iron ion transmembrane transporter activity|GO:0005381|10394943|TAS  go_function iron ion transmembrane transporter activity|GO:0005381|11500563|TAS  go_function iron ion transmembrane transporter activity|GO:0005381|17337631|IGI  go_function manganese ion transmembrane transporter activity|GO:0005384|11500563|TAS  go_function zinc ion transmembrane transporter activity|GO:0005385|11500563|TAS  go_function cadmium ion transmembrane transporter activity|GO:0015086|11500563|TAS  go_function copper uptake transmembrane transporter activity|GO:0015088|17337631|IGI  product IRT1 (iron-regulated transporter 1); cadmium ion transmembrane transporter/ copper uptake transmembrane transporter/ iron ion transmembrane transporter/ manganese ion transmembrane transporter/ zinc ion transmembrane transporter  note iron-regulated transporter 1 (IRT1); FUNCTIONS IN: manganese ion transmembrane transporter activity, zinc ion transmembrane transporter activity, cadmium ion transmembrane transporter activity, copper uptake transmembrane transporter activity, iron ion transmembrane transporter activity; INVOLVED IN: in 11 processes; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: ZIP8 (ZINC TRANSPORTER 8 PRECURSOR); cation transmembrane transporter (TAIR:AT5G45105.2); Has 614 Blast hits to 614 proteins in 105 species: Archae - 0; Bacteria - 2; Metazoa - 45; Fungi - 247; Plants - 253; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT4G19690.1p  transcript_id AT4G19690.1  protein_id AT4G19690.1p  transcript_id AT4G19690.1  
At4g19700	chr4:010714580	0.0	C/10714580-10714635,10713633-10714491	AT4G19700.1  CDS  gene_syn RING, T16H5.60, T16H5_60  gene RING  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process response to gibberellin stimulus|GO:0009739|17933900|IEP  product RING; protein binding / zinc ion binding  note RING; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: response to gibberellin stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT5G45100.1); Has 448 Blast hits to 448 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 193; Fungi - 0; Plants - 205; Viruses - 17; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT4G19700.1p  transcript_id AT4G19700.1  protein_id AT4G19700.1p  transcript_id AT4G19700.1  
At4g19710	chr4:010725229	0.0	W/10725229-10725433,10725511-10725891,10725965-10726053,10726137-10726440,10726507-10726559,10726638-10726846,10726955-10727042,10727134-10727247,10727376-10727474,10727587-10727781,10727888-10727970,10728125-10728350,10728473-10728618,10728711-10728846,10728942-10729025,10729111-10729203,10729291-10729536	AT4G19710.2  CDS  gene_syn AK-HSDH, AK-HSDH II, ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE, ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE II, T16H5.70, T16H5_70  gene AK-HSDH II  function Encodes a bifunctional aspartate kinase/homoserine dehydrogenase. These two activities catalyze the first and the third steps toward the synthesis of the essential amino acids threonine, isoleucine and methionine.  go_component chloroplast|GO:0009507|18431481|IDA  go_process aspartate family amino acid biosynthetic process|GO:0009067|8204822|TAS  go_function aspartate kinase activity|GO:0004072|16216875|IDA  go_function homoserine dehydrogenase activity|GO:0004412|16216875|IDA  product bifunctional aspartate kinase/homoserine dehydrogenase, putative / AK-HSDH, putative  note ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE II (AK-HSDH II); FUNCTIONS IN: homoserine dehydrogenase activity, aspartate kinase activity; INVOLVED IN: aspartate family amino acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aspartate/glutamate/uridylate kinase (InterPro:IPR001048), Homoserine dehydrogenase, catalytic (InterPro:IPR001342), Amino acid-binding ACT (InterPro:IPR002912), Aspartate/homoserine dehydrogenase, NAD-binding (InterPro:IPR005106), Aspartate kinase, conserved site (InterPro:IPR018042), Aspartate kinase region (InterPro:IPR001341), NAD(P)-binding (InterPro:IPR016040), Bifunctional aspartokinase/homoserine dehydrogenase I (InterPro:IPR011147); BEST Arabidopsis thaliana protein match is: AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I); aspartate kinase/ homoserine dehydrogenase (TAIR:AT1G31230.1); Has 11592 Blast hits to 11322 proteins in 1390 species: Archae - 286; Bacteria - 6083; Metazoa - 6; Fungi - 199; Plants - 160; Viruses - 0; Other Eukaryotes - 4858 (source: NCBI BLink).  protein_id AT4G19710.2p  transcript_id AT4G19710.2  protein_id AT4G19710.2p  transcript_id AT4G19710.2  
At4g19710	chr4:010725229	0.0	W/10725229-10725433,10725511-10725891,10725965-10726053,10726137-10726440,10726507-10726559,10726638-10726846,10726955-10727042,10727134-10727247,10727376-10727474,10727587-10727781,10727888-10727970,10728125-10728350,10728473-10728618,10728711-10728846,10728942-10729025,10729111-10729278	AT4G19710.1  CDS  gene_syn AK-HSDH, AK-HSDH II, ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE, ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE II, T16H5.70, T16H5_70  gene AK-HSDH II  function Encodes a bifunctional aspartate kinase/homoserine dehydrogenase. These two activities catalyze the first and the third steps toward the synthesis of the essential amino acids threonine, isoleucine and methionine.  go_component chloroplast|GO:0009507|18431481|IDA  go_process aspartate family amino acid biosynthetic process|GO:0009067|8204822|TAS  go_function aspartate kinase activity|GO:0004072|16216875|IDA  go_function homoserine dehydrogenase activity|GO:0004412|16216875|IDA  product bifunctional aspartate kinase/homoserine dehydrogenase, putative / AK-HSDH, putative  note ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE II (AK-HSDH II); FUNCTIONS IN: homoserine dehydrogenase activity, aspartate kinase activity; INVOLVED IN: aspartate family amino acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aspartate/glutamate/uridylate kinase (InterPro:IPR001048), Homoserine dehydrogenase, catalytic (InterPro:IPR001342), Amino acid-binding ACT (InterPro:IPR002912), Aspartate/homoserine dehydrogenase, NAD-binding (InterPro:IPR005106), Aspartate kinase, conserved site (InterPro:IPR018042), Aspartate kinase region (InterPro:IPR001341), NAD(P)-binding (InterPro:IPR016040), Bifunctional aspartokinase/homoserine dehydrogenase I (InterPro:IPR011147); BEST Arabidopsis thaliana protein match is: AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I); aspartate kinase/ homoserine dehydrogenase (TAIR:AT1G31230.1); Has 11492 Blast hits to 11222 proteins in 1390 species: Archae - 286; Bacteria - 6079; Metazoa - 6; Fungi - 199; Plants - 158; Viruses - 0; Other Eukaryotes - 4764 (source: NCBI BLink).  protein_id AT4G19710.1p  transcript_id AT4G19710.1  protein_id AT4G19710.1p  transcript_id AT4G19710.1  
At4g19720	chr4:010731038	0.0	C/10731038-10731695,10730363-10730796	AT4G19720.1  CDS  gene_syn T16H5.80, T16H5_80  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function chitinase activity|GO:0004568||IEA  go_function cation binding|GO:0043169||IEA  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 18 protein  note glycosyl hydrolase family 18 protein; FUNCTIONS IN: cation binding, chitinase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Chitinase II (InterPro:IPR011583), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 18 protein (TAIR:AT4G19810.1); Has 3987 Blast hits to 3825 proteins in 681 species: Archae - 15; Bacteria - 1252; Metazoa - 1534; Fungi - 811; Plants - 81; Viruses - 100; Other Eukaryotes - 194 (source: NCBI BLink).  protein_id AT4G19720.1p  transcript_id AT4G19720.1  protein_id AT4G19720.1p  transcript_id AT4G19720.1  
At4g19730	chr4:010734303	0.0	C/10734303-10734975,10733864-10734189	AT4G19730.1  CDS  gene_syn T16H5.90, T16H5_90  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function chitinase activity|GO:0004568||IEA  go_function cation binding|GO:0043169||IEA  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 18 protein  note glycosyl hydrolase family 18 protein; FUNCTIONS IN: cation binding, chitinase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Chitinase II (InterPro:IPR011583), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: catalytic/ cation binding / chitinase/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT4G19760.1); Has 3706 Blast hits to 3542 proteins in 634 species: Archae - 11; Bacteria - 1034; Metazoa - 1479; Fungi - 823; Plants - 77; Viruses - 94; Other Eukaryotes - 188 (source: NCBI BLink).  protein_id AT4G19730.1p  transcript_id AT4G19730.1  protein_id AT4G19730.1p  transcript_id AT4G19730.1  
At4g19740	chr4:010739939	0.0	C/10739939-10740302,10739567-10739838	AT4G19740.1  CDS  gene_syn T16H5.100, T16H5_100  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function chitinase activity|GO:0004568||IEA  go_function cation binding|GO:0043169||IEA  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product catalytic/ cation binding / chitinase/ hydrolase, hydrolyzing O-glycosyl compounds  note catalytic/ cation binding / chitinase/ hydrolase, hydrolyzing O-glycosyl compounds; FUNCTIONS IN: cation binding, chitinase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Chitinase II (InterPro:IPR011583), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 18 protein (TAIR:AT4G19720.1); Has 3143 Blast hits to 2996 proteins in 535 species: Archae - 7; Bacteria - 906; Metazoa - 1276; Fungi - 687; Plants - 73; Viruses - 55; Other Eukaryotes - 139 (source: NCBI BLink).  protein_id AT4G19740.1p  transcript_id AT4G19740.1  protein_id AT4G19740.1p  transcript_id AT4G19740.1  
At4g19750	chr4:010746467	0.0	C/10746467-10747127,10745682-10746109	AT4G19750.1  CDS  gene_syn T16H5.110, T16H5_110  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function chitinase activity|GO:0004568||IEA  go_function cation binding|GO:0043169||IEA  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 18 protein  note glycosyl hydrolase family 18 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, chitinase activity, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Chitinase II (InterPro:IPR011583), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: catalytic/ cation binding / chitinase/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT4G19760.1); Has 4115 Blast hits to 3955 proteins in 681 species: Archae - 15; Bacteria - 1366; Metazoa - 1506; Fungi - 845; Plants - 74; Viruses - 100; Other Eukaryotes - 209 (source: NCBI BLink).  protein_id AT4G19750.1p  transcript_id AT4G19750.1  protein_id AT4G19750.1p  transcript_id AT4G19750.1  
At4g19760	chr4:010750381	0.0	W/10750381-10751068,10751420-10751812,10752000-10752028	AT4G19760.1  CDS  gene_syn T16H5.120, T16H5_120  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function chitinase activity|GO:0004568||IEA  go_function cation binding|GO:0043169||IEA  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product catalytic/ cation binding / chitinase/ hydrolase, hydrolyzing O-glycosyl compounds  note catalytic/ cation binding / chitinase/ hydrolase, hydrolyzing O-glycosyl compounds; FUNCTIONS IN: cation binding, chitinase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Chitinase II (InterPro:IPR011583), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 18 protein (TAIR:AT4G19750.1); Has 4102 Blast hits to 3939 proteins in 689 species: Archae - 15; Bacteria - 1314; Metazoa - 1530; Fungi - 846; Plants - 81; Viruses - 100; Other Eukaryotes - 216 (source: NCBI BLink).  protein_id AT4G19760.1p  transcript_id AT4G19760.1  protein_id AT4G19760.1p  transcript_id AT4G19760.1  
At4g19770	chr4:010753815	0.0	C/10753815-10754181,10753310-10753728	AT4G19770.1  CDS  gene_syn T16H5.130, T16H5_130  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function chitinase activity|GO:0004568||IEA  go_function cation binding|GO:0043169||IEA  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 18 protein  note glycosyl hydrolase family 18 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, chitinase activity, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, chitinase active site (InterPro:IPR001579), Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Chitinase II (InterPro:IPR011583), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 18 protein (TAIR:AT4G19800.1); Has 3988 Blast hits to 3826 proteins in 694 species: Archae - 13; Bacteria - 1279; Metazoa - 1498; Fungi - 851; Plants - 78; Viruses - 100; Other Eukaryotes - 169 (source: NCBI BLink).  protein_id AT4G19770.1p  transcript_id AT4G19770.1  protein_id AT4G19770.1p  transcript_id AT4G19770.1  
At4g19780	chr4:010755050	0.0	C/10755050-10755970	AT4G19780.1  mRNA_TE_gene  pseudo  gene_syn T16H5.140, T16H5_140  note Transposable element gene, copia-like retrotransposon family, has a 1.0e-72 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea)  
At4g19790	chr4:010755966	0.0	W/10755966-10756808	AT4G19790.1  mRNA_TE_gene  pseudo  gene_syn T16H5.150, T16H5_150  note Transposable element gene, copia-like retrotransposon family, has a 1.1e-45 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At4g19800	chr4:010761477	0.0	C/10761477-10762104,10760830-10761398	AT4G19800.1  CDS  gene_syn T16H5.160, T16H5_160  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function chitinase activity|GO:0004568||IEA  go_function cation binding|GO:0043169||IEA  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 18 protein  note glycosyl hydrolase family 18 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, chitinase activity, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Chitinase II (InterPro:IPR011583), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 18 protein (TAIR:AT4G19810.1); Has 4642 Blast hits to 4477 proteins in 773 species: Archae - 15; Bacteria - 1674; Metazoa - 1600; Fungi - 907; Plants - 78; Viruses - 100; Other Eukaryotes - 268 (source: NCBI BLink).  protein_id AT4G19800.1p  transcript_id AT4G19800.1  protein_id AT4G19800.1p  transcript_id AT4G19800.1  
At4g19810	chr4:010765060	0.0	C/10765060-10765753,10764286-10764675,10764151-10764206	AT4G19810.1  CDS  gene_syn T16H5.170, T16H5_170  go_component cell wall|GO:0005618|15593128|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function chitinase activity|GO:0004568||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 18 protein  note glycosyl hydrolase family 18 protein; FUNCTIONS IN: cation binding, chitinase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Chitinase II (InterPro:IPR011583), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 18 protein (TAIR:AT4G19820.1); Has 4714 Blast hits to 4549 proteins in 751 species: Archae - 17; Bacteria - 1707; Metazoa - 1610; Fungi - 916; Plants - 84; Viruses - 100; Other Eukaryotes - 280 (source: NCBI BLink).  protein_id AT4G19810.1p  transcript_id AT4G19810.1  protein_id AT4G19810.1p  transcript_id AT4G19810.1  
At4g19820	chr4:010767927	0.0	C/10767927-10768614,10767436-10767848	AT4G19820.1  CDS  gene_syn T16H5.180, T16H5_180  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function chitinase activity|GO:0004568||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 18 protein  note glycosyl hydrolase family 18 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, chitinase activity, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Chitinase II (InterPro:IPR011583), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 18 protein (TAIR:AT4G19810.1); Has 4107 Blast hits to 3941 proteins in 687 species: Archae - 15; Bacteria - 1285; Metazoa - 1545; Fungi - 856; Plants - 80; Viruses - 98; Other Eukaryotes - 228 (source: NCBI BLink).  protein_id AT4G19820.1p  transcript_id AT4G19820.1  protein_id AT4G19820.1p  transcript_id AT4G19820.1  
At4g19829	chr4:010772133	0.0	C/10772133-10772270	AT4G19829.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G19829.1p  transcript_id AT4G19829.1  protein_id AT4G19829.1p  transcript_id AT4G19829.1  
At4g19830	chr4:010773613	0.0	C/10773613-10773933,10773408-10773530,10773053-10773169,10772579-10772707	AT4G19830.1  CDS  gene_syn T16H5.190, T16H5_190  go_process protein folding|GO:0006457||IEA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|ISS  go_component chloroplast thylakoid lumen|GO:0009543||ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  go_function FK506 binding|GO:0005528||ISS  product immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein  note immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: chloroplast thylakoid lumen; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT5G13410.1); Has 3655 Blast hits to 3598 proteins in 801 species: Archae - 38; Bacteria - 1430; Metazoa - 789; Fungi - 263; Plants - 386; Viruses - 0; Other Eukaryotes - 749 (source: NCBI BLink).  protein_id AT4G19830.1p  transcript_id AT4G19830.1  protein_id AT4G19830.1p  transcript_id AT4G19830.1  
At4g19840	chr4:010774336	0.0	W/10774336-10774581,10774969-10775090,10775329-10775701	AT4G19840.1  CDS  gene_syn ATPP2-A1, Arabidopsis thaliana phloem protein 2-A1, AtPP2A-1, T16H5.200, T16H5_200  gene ATPP2-A1  function encodes a protein similar to phloem lectin in cucumber and celery. Gene is expressed in the phloem, predominantly in the companion cells.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function carbohydrate binding|GO:0030246|12529520|ISS  product ATPP2-A1; carbohydrate binding  note ATPP2-A1; FUNCTIONS IN: carbohydrate binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: ATPP2-A5 (ARABIDOPSIS THALIANA PHLOEM PROTEIN 2 A5); carbohydrate binding (TAIR:AT1G65390.1); Has 257 Blast hits to 254 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 257; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G19840.1p  transcript_id AT4G19840.1  protein_id AT4G19840.1p  transcript_id AT4G19840.1  
At4g19850	chr4:010776925	0.0	W/10776925-10777509	AT4G19850.1  CDS  gene_syn ATPP2-A2, PP2A2, T16H5.210, T16H5_210  gene ATPP2-A2  function encodes a protein similar to phloem protein 2 in cucumber. a member of a large gene family.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function carbohydrate binding|GO:0030246|12529520|ISS  product ATPP2-A2; carbohydrate binding  note ATPP2-A2; FUNCTIONS IN: carbohydrate binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: phloem; BEST Arabidopsis thaliana protein match is: ATPP2-A4 (Phloem protein 2-A4); carbohydrate binding (TAIR:AT1G33920.1); Has 240 Blast hits to 240 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 240; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G19850.1p  transcript_id AT4G19850.1  protein_id AT4G19850.1p  transcript_id AT4G19850.1  
At4g19850	chr4:010776954	0.0	W/10776954-10777045,10777137-10777509	AT4G19850.2  CDS  gene_syn ATPP2-A2, PP2A2, T16H5.210, T16H5_210  gene ATPP2-A2  function encodes a protein similar to phloem protein 2 in cucumber. a member of a large gene family.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function carbohydrate binding|GO:0030246|12529520|ISS  product ATPP2-A2; carbohydrate binding  note ATPP2-A2; FUNCTIONS IN: carbohydrate binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: phloem; BEST Arabidopsis thaliana protein match is: ATPP2-A4 (Phloem protein 2-A4); carbohydrate binding (TAIR:AT1G33920.1).  protein_id AT4G19850.2p  transcript_id AT4G19850.2  protein_id AT4G19850.2p  transcript_id AT4G19850.2  
At4g19860	chr4:010780017	0.0	C/10780017-10780260,10779805-10779896,10779586-10779704,10779373-10779508,10779239-10779290,10779059-10779159,10778762-10778950,10778500-10778657,10778351-10778405,10778182-10778235,10777655-10778062	AT4G19860.1  CDS  gene_syn T16H5.220, T16H5_220  go_process lipid metabolic process|GO:0006629||IEA  go_function phosphatidylcholine-sterol O-acyltransferase activity|GO:0004607||IEA  go_component cellular_component|GO:0005575||ND  go_process lipid metabolic process|GO:0006629||ISS  go_function phosphatidylcholine-sterol O-acyltransferase activity|GO:0004607||ISS  product lecithin:cholesterol acyltransferase family protein / LACT family protein  note lecithin:cholesterol acyltransferase family protein / LACT family protein; FUNCTIONS IN: phosphatidylcholine-sterol O-acyltransferase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lecithin:cholesterol acyltransferase (InterPro:IPR003386); BEST Arabidopsis thaliana protein match is: lecithin:cholesterol acyltransferase family protein / LACT family protein (TAIR:AT3G03310.1); Has 391 Blast hits to 383 proteins in 110 species: Archae - 2; Bacteria - 29; Metazoa - 150; Fungi - 29; Plants - 90; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).  protein_id AT4G19860.1p  transcript_id AT4G19860.1  protein_id AT4G19860.1p  transcript_id AT4G19860.1  
At4g19865	chr4:010781184	0.0	C/10781184-10782365	AT4G19865.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G19870.2); Has 1107 Blast hits to 1088 proteins in 105 species: Archae - 0; Bacteria - 29; Metazoa - 428; Fungi - 7; Plants - 595; Viruses - 9; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT4G19865.1p  transcript_id AT4G19865.1  protein_id AT4G19865.1p  transcript_id AT4G19865.1  
At4g19870	chr4:010783054	0.0	C/10783054-10784256	AT4G19870.1  CDS  gene_syn T16H5.230, T16H5_230  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G19865.1); Has 3287 Blast hits to 2599 proteins in 158 species: Archae - 10; Bacteria - 112; Metazoa - 2275; Fungi - 2; Plants - 670; Viruses - 91; Other Eukaryotes - 127 (source: NCBI BLink).  protein_id AT4G19870.1p  transcript_id AT4G19870.1  protein_id AT4G19870.1p  transcript_id AT4G19870.1  
At4g19870	chr4:010783054	0.0	C/10783054-10784256	AT4G19870.2  CDS  gene_syn T16H5.230, T16H5_230  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G19865.1); Has 3287 Blast hits to 2599 proteins in 158 species: Archae - 10; Bacteria - 112; Metazoa - 2275; Fungi - 2; Plants - 670; Viruses - 91; Other Eukaryotes - 127 (source: NCBI BLink).  protein_id AT4G19870.2p  transcript_id AT4G19870.2  protein_id AT4G19870.2p  transcript_id AT4G19870.2  
At4g19880	chr4:010786296	0.0	C/10786296-10786376,10785807-10786031,10785531-10785707,10785218-10785442,10784691-10785131	AT4G19880.2  CDS  gene_syn T16H5.240, T16H5_240  go_component chloroplast|GO:0009507||IEA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutathione S-transferase, predicted (InterPro:IPR016639), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45020.1); Has 1621 Blast hits to 1621 proteins in 489 species: Archae - 12; Bacteria - 905; Metazoa - 23; Fungi - 155; Plants - 57; Viruses - 0; Other Eukaryotes - 469 (source: NCBI BLink).  protein_id AT4G19880.2p  transcript_id AT4G19880.2  protein_id AT4G19880.2p  transcript_id AT4G19880.2  
At4g19880	chr4:010786296	0.0	C/10786296-10786376,10785807-10786031,10785531-10785707,10785218-10785442,10784999-10785131,10784824-10784924	AT4G19880.3  CDS  gene_syn T16H5.240, T16H5_240  go_component chloroplast|GO:0009507||IEA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutathione S-transferase, predicted (InterPro:IPR016639), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45020.1); Has 1567 Blast hits to 1567 proteins in 487 species: Archae - 12; Bacteria - 899; Metazoa - 23; Fungi - 155; Plants - 55; Viruses - 0; Other Eukaryotes - 423 (source: NCBI BLink).  protein_id AT4G19880.3p  transcript_id AT4G19880.3  protein_id AT4G19880.3p  transcript_id AT4G19880.3  
At4g19880	chr4:010786296	0.0	C/10786296-10786376,10785807-10786031,10785531-10785707,10785218-10785442,10785003-10785131,10784691-10784924	AT4G19880.1  CDS  gene_syn T16H5.240, T16H5_240  go_component chloroplast|GO:0009507||IEA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutathione S-transferase, predicted (InterPro:IPR016639), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45020.1); Has 1635 Blast hits to 1635 proteins in 489 species: Archae - 12; Bacteria - 905; Metazoa - 23; Fungi - 158; Plants - 57; Viruses - 0; Other Eukaryotes - 480 (source: NCBI BLink).  protein_id AT4G19880.1p  transcript_id AT4G19880.1  protein_id AT4G19880.1p  transcript_id AT4G19880.1  
At4g19900	chr4:010790166	0.0	C/10790166-10791433,10789936-10790085,10789720-10789854,10789418-10789612,10789187-10789330,10786948-10788964	AT4G19900.1  CDS  gene_syn F18F4.6, F18F4_6  go_component mitochondrion|GO:0005739||IEA  go_component Golgi stack|GO:0005795||IEA  go_process biological_process|GO:0008150||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyl transferase-related  note glycosyl transferase-related; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, Golgi stack; EXPRESSED IN: flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Alpha 1,4-glycosyltransferase conserved region (InterPro:IPR007652), Glycosyltransferase sugar-binding region containing DXD motif (InterPro:IPR007577); BEST Arabidopsis thaliana protein match is: EMB2745 (EMBRYO DEFECTIVE 2745) (TAIR:AT5G39710.1); Has 23962 Blast hits to 6223 proteins in 210 species: Archae - 2; Bacteria - 61; Metazoa - 767; Fungi - 472; Plants - 21676; Viruses - 0; Other Eukaryotes - 984 (source: NCBI BLink).  protein_id AT4G19900.1p  transcript_id AT4G19900.1  protein_id AT4G19900.1p  transcript_id AT4G19900.1  
At4g19902	chr4:010791822	0.0	C/10791822-10791972	AT4G19902.1  pseudogenic_transcript  pseudo  function unknown pseudogene  
At4g19905	chr4:010794707	0.0	C/10794707-10794758,10794165-10794343	AT4G19905.1  CDS  gene_syn LCR38, Low-molecular-weight cysteine-rich 38  gene LCR38  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR38 (Low-molecular-weight cysteine-rich 38)  note Low-molecular-weight cysteine-rich 38 (LCR38); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: LCR24 (Low-molecular-weight cysteine-rich 24) (TAIR:AT4G29285.1); Has 29 Blast hits to 29 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G19905.1p  transcript_id AT4G19905.1  protein_id AT4G19905.1p  transcript_id AT4G19905.1  
At4g19910	chr4:010796227	0.0	C/10796227-10796687,10795869-10796133	AT4G19910.1  CDS  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_component membrane|GO:0016020|11152613|ISS  go_process defense response|GO:0006952||ISS  go_function transmembrane receptor activity|GO:0004888||ISS  product Toll-Interleukin-Resistance (TIR) domain-containing protein  note Toll-Interleukin-Resistance (TIR) domain-containing protein; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR class), putative (TAIR:AT4G19920.1); Has 786 Blast hits to 755 proteins in 42 species: Archae - 0; Bacteria - 4; Metazoa - 4; Fungi - 0; Plants - 777; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G19910.1p  transcript_id AT4G19910.1  protein_id AT4G19910.1p  transcript_id AT4G19910.1  
At4g19920	chr4:010797771	0.0	C/10797771-10798360,10797392-10797626	AT4G19920.1  CDS  gene_syn F18F4.20, F18F4_20  go_component chloroplast|GO:0009507||IEA  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR class), putative  note disease resistance protein (TIR class), putative; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane, chloroplast; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR class), putative (TAIR:AT4G19925.1); Has 4218 Blast hits to 1997 proteins in 247 species: Archae - 6; Bacteria - 288; Metazoa - 587; Fungi - 188; Plants - 2080; Viruses - 562; Other Eukaryotes - 507 (source: NCBI BLink).  protein_id AT4G19920.1p  transcript_id AT4G19920.1  protein_id AT4G19920.1p  transcript_id AT4G19920.1  
At4g19925	chr4:010800230	0.0	C/10800230-10800726,10799875-10800127	AT4G19925.1  CDS  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_component membrane|GO:0016020|11152613|ISS  go_process defense response|GO:0006952||ISS  go_function transmembrane receptor activity|GO:0004888||ISS  product disease resistance protein (TIR class), putative  note disease resistance protein (TIR class), putative; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR class), putative (TAIR:AT4G19920.1); Has 790 Blast hits to 760 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 790; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G19925.1p  transcript_id AT4G19925.1  protein_id AT4G19925.1p  transcript_id AT4G19925.1  
At4g19930	chr4:010803558	0.0	W/10803558-10804853	AT4G19930.1  CDS  gene_syn F18F4.30, F18F4_30  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G19940.1); Has 852 Blast hits to 834 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 850; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G19930.1p  transcript_id AT4G19930.1  protein_id AT4G19930.1p  transcript_id AT4G19930.1  
At4g19940	chr4:010806195	0.0	W/10806195-10807430	AT4G19940.1  CDS  gene_syn F18F4.40, F18F4_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G19930.1); Has 1056 Blast hits to 1033 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1054; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G19940.1p  transcript_id AT4G19940.1  protein_id AT4G19940.1p  transcript_id AT4G19940.1  
At4g19950	chr4:010809977	0.0	W/10809977-10810942	AT4G19950.1  CDS  gene_syn F18F4.50, F18F4_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44860.1); Has 187 Blast hits to 181 proteins in 40 species: Archae - 0; Bacteria - 51; Metazoa - 7; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G19950.1p  transcript_id AT4G19950.1  protein_id AT4G19950.1p  transcript_id AT4G19950.1  
At4g19960	chr4:010813807	0.0	W/10813807-10813956,10814051-10814276,10814355-10814600,10814679-10814729,10814813-10815073,10815150-10815317,10815416-10815718,10815837-10816359,10816454-10816997	AT4G19960.1  CDS  gene_syn F18F4.60, F18F4_60  go_component membrane|GO:0016020||IEA  go_process potassium ion transport|GO:0006813||IEA  go_process potassium ion transport|GO:0006813||ISS  go_function potassium ion transmembrane transporter activity|GO:0015079||ISS  product potassium ion transmembrane transporter  note potassium ion transmembrane transporter; FUNCTIONS IN: potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: K+ potassium transporter (InterPro:IPR003855), Potassium uptake protein, kup (InterPro:IPR018519); BEST Arabidopsis thaliana protein match is: KUP11; potassium ion transmembrane transporter (TAIR:AT2G35060.1); Has 2041 Blast hits to 2000 proteins in 586 species: Archae - 13; Bacteria - 1386; Metazoa - 0; Fungi - 57; Plants - 444; Viruses - 4; Other Eukaryotes - 137 (source: NCBI BLink).  protein_id AT4G19960.1p  transcript_id AT4G19960.1  protein_id AT4G19960.1p  transcript_id AT4G19960.1  
At4g19970	chr4:010818242	0.0	W/10818242-10818517,10818809-10819186,10820124-10820590,10823719-10823902,10824042-10824407,10824867-10825343	AT4G19970.1  CDS  gene_syn F18F4.70, F18F4_70  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44820.1); Has 461 Blast hits to 264 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 429; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT4G19970.1p  transcript_id AT4G19970.1  protein_id AT4G19970.1p  transcript_id AT4G19970.1  
At4g19980	chr4:010828153	0.0	C/10828153-10828536	AT4G19980.1  CDS  gene_syn F18F4.80, F18F4_80  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: pedicel, root; EXPRESSED DURING: 4 anthesis; Has 15 Blast hits to 15 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G19980.1p  transcript_id AT4G19980.1  protein_id AT4G19980.1p  transcript_id AT4G19980.1  
At4g19985	chr4:010831196	0.0	C/10831196-10831711,10831010-10831068,10830857-10830913,10830542-10830623	AT4G19985.1  CDS  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process metabolic process|GO:0008152||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_process metabolic process|GO:0008152||ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product GCN5-related N-acetyltransferase (GNAT) family protein  note GCN5-related N-acetyltransferase (GNAT) family protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: N-terminal protein myristoylation, metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: ATNSI (NUCLEAR SHUTTLE INTERACTING); N-acetyltransferase (TAIR:AT1G32070.3); Has 192 Blast hits to 192 proteins in 68 species: Archae - 6; Bacteria - 114; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT4G19985.1p  transcript_id AT4G19985.1  protein_id AT4G19985.1p  transcript_id AT4G19985.1  
At4g19990	chr4:010832848	0.0	W/10832848-10833481,10833677-10834821,10834926-10835033,10835114-10835221,10835321-10835389	AT4G19990.1  CDS  gene_syn F18F4.90, F18F4_90, FAR1-related sequence 1, FRS1  gene FRS1  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process response to red or far red light|GO:0009639||ISS  product FRS1 (FAR1-related sequence 1); zinc ion binding  note FAR1-related sequence 1 (FRS1); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FHY3 (FAR-RED ELONGATED HYPOCOTYLS 3); transcription activator/ transcription factor (TAIR:AT3G22170.2); Has 868 Blast hits to 617 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 4; Plants - 844; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT4G19990.1p  transcript_id AT4G19990.1  protein_id AT4G19990.1p  transcript_id AT4G19990.1  
At4g20000	chr4:010838367	0.0	W/10838367-10838993	AT4G20000.1  CDS  gene_syn F18F4.100, F18F4_100  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product VQ motif-containing protein  note VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); Has 59 Blast hits to 59 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G20000.1p  transcript_id AT4G20000.1  protein_id AT4G20000.1p  transcript_id AT4G20000.1  
At4g20006	chr4:010840974	0.0	C/10840974-10841096	AT4G20006.1  CDS  go_component mitochondrion|GO:0005739||IEA  product unknown protein  note unknown protein; LOCATED IN: mitochondrion; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G20006.1p  transcript_id AT4G20006.1  protein_id AT4G20006.1p  transcript_id AT4G20006.1  
At4g20010	chr4:010842128	0.0	W/10842128-10842543,10842638-10842776,10842919-10843027,10843220-10843329,10843444-10843591,10843710-10843774,10843861-10843989	AT4G20010.1  CDS  gene_syn F18F4.110, F18F4_110, ORGANELLAR SINGLE-STRANDED DNA BINDING PROTEIN 2, OSB2, PLASTID TRANSCRIPTIONALLY ACTIVE 9, PTAC9  gene PTAC9  go_component nucleoid|GO:0009295|16326926|IDA  go_function single-stranded DNA binding|GO:0003697||IEA  go_component plastid chromosome|GO:0009508|16326926|IDA  go_process biological_process|GO:0008150||ND  product PTAC9 (PLASTID TRANSCRIPTIONALLY ACTIVE 9); single-stranded DNA binding  note PLASTID TRANSCRIPTIONALLY ACTIVE 9 (PTAC9); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: plastid chromosome, nucleoid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Primosome PriB/single-strand DNA-binding (InterPro:IPR000424); BEST Arabidopsis thaliana protein match is: OSB3 (ORGANELLAR SINGLE-STRANDED DNA BINDING PROTEIN 3); single-stranded DNA binding (TAIR:AT5G44785.1); Has 116 Blast hits to 66 proteins in 12 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 110; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G20010.1p  transcript_id AT4G20010.1  protein_id AT4G20010.1p  transcript_id AT4G20010.1  
At4g20010	chr4:010842128	0.0	W/10842128-10842543,10842638-10842776,10842919-10843031,10843224-10843329,10843444-10843591,10843710-10843774,10843861-10843989	AT4G20010.2  CDS  gene_syn F18F4.110, F18F4_110, ORGANELLAR SINGLE-STRANDED DNA BINDING PROTEIN 2, OSB2, PLASTID TRANSCRIPTIONALLY ACTIVE 9, PTAC9  gene PTAC9  go_component nucleoid|GO:0009295|16326926|IDA  go_function single-stranded DNA binding|GO:0003697||IEA  go_component plastid chromosome|GO:0009508|16326926|IDA  go_process biological_process|GO:0008150||ND  product PTAC9 (PLASTID TRANSCRIPTIONALLY ACTIVE 9); single-stranded DNA binding  note PLASTID TRANSCRIPTIONALLY ACTIVE 9 (PTAC9); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: plastid chromosome, nucleoid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Primosome PriB/single-strand DNA-binding (InterPro:IPR000424); BEST Arabidopsis thaliana protein match is: OSB3 (ORGANELLAR SINGLE-STRANDED DNA BINDING PROTEIN 3); single-stranded DNA binding (TAIR:AT5G44785.1); Has 123 Blast hits to 72 proteins in 15 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 111; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G20010.2p  transcript_id AT4G20010.2  protein_id AT4G20010.2p  transcript_id AT4G20010.2  
At4g20020	chr4:010845718	0.0	C/10845718-10846085,10845402-10845499,10845247-10845312,10844433-10845160	AT4G20020.1  CDS  gene_syn F18F4.120, F18F4_120  product unknown protein  note unknown protein; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44780.1); Has 26028 Blast hits to 13667 proteins in 803 species: Archae - 4; Bacteria - 3179; Metazoa - 14711; Fungi - 2562; Plants - 2584; Viruses - 195; Other Eukaryotes - 2793 (source: NCBI BLink).  protein_id AT4G20020.1p  transcript_id AT4G20020.1  protein_id AT4G20020.1p  transcript_id AT4G20020.1  
At4g20020	chr4:010845718	0.0	C/10845718-10846085,10845402-10845499,10845247-10845312,10844496-10845160,10844360-10844383	AT4G20020.2  CDS  gene_syn F18F4.120, F18F4_120  product unknown protein  note unknown protein; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44780.1); Has 26404 Blast hits to 13801 proteins in 799 species: Archae - 4; Bacteria - 3139; Metazoa - 15016; Fungi - 2610; Plants - 2573; Viruses - 194; Other Eukaryotes - 2868 (source: NCBI BLink).  protein_id AT4G20020.2p  transcript_id AT4G20020.2  protein_id AT4G20020.2p  transcript_id AT4G20020.2  
At4g20030	chr4:010846362	0.0	W/10846362-10846497,10846755-10846823,10846914-10847020,10847100-10847246	AT4G20030.1  CDS  gene_syn F18F4.130, F18F4_130  go_component nucleus|GO:0005634|14617066|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT3G20930.1); Has 12724 Blast hits to 10426 proteins in 537 species: Archae - 10; Bacteria - 848; Metazoa - 7090; Fungi - 1459; Plants - 1985; Viruses - 0; Other Eukaryotes - 1332 (source: NCBI BLink).  protein_id AT4G20030.1p  transcript_id AT4G20030.1  protein_id AT4G20030.1p  transcript_id AT4G20030.1  
At4g20040	chr4:010848772	0.0	C/10848772-10848963,10848462-10848689,10847348-10848379	AT4G20040.1  CDS  gene_syn F18F4.140, F18F4_140  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: QRT3 (QUARTET 3); polygalacturonase (TAIR:AT4G20050.2); Has 90 Blast hits to 90 proteins in 38 species: Archae - 0; Bacteria - 51; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT4G20040.1p  transcript_id AT4G20040.1  protein_id AT4G20040.1p  transcript_id AT4G20040.1  
At4g20050	chr4:010851887	0.0	C/10851887-10852090,10851542-10851778,10849911-10850915	AT4G20050.1  CDS  gene_syn F18F4.150, F18F4_150, QRT3, QUARTET 3  gene QRT3  function Encodes a polygalacturonase that plays a direct role in degrading the pollen mother cell wall during microspore development.  go_component endomembrane system|GO:0012505||IEA  go_process microsporogenesis|GO:0009556|14551328|IMP  go_process pollen exine formation|GO:0010584||IMP  go_function polygalacturonase activity|GO:0004650|14551328|IDA  product QRT3 (QUARTET 3); polygalacturonase  note QUARTET 3 (QRT3); FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: microsporogenesis, pollen exine formation; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G20040.1); Has 53 Blast hits to 53 proteins in 15 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 2; Plants - 28; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT4G20050.1p  transcript_id AT4G20050.1  protein_id AT4G20050.1p  transcript_id AT4G20050.1  
At4g20050	chr4:010851887	0.0	C/10851887-10852090,10851542-10851778,10849911-10850915	AT4G20050.2  CDS  gene_syn F18F4.150, F18F4_150, QRT3, QUARTET 3  gene QRT3  function Encodes a polygalacturonase that plays a direct role in degrading the pollen mother cell wall during microspore development.  go_component endomembrane system|GO:0012505||IEA  go_process microsporogenesis|GO:0009556|14551328|IMP  go_process pollen exine formation|GO:0010584||IMP  go_function polygalacturonase activity|GO:0004650|14551328|IDA  product QRT3 (QUARTET 3); polygalacturonase  note QUARTET 3 (QRT3); FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: microsporogenesis, pollen exine formation; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G20040.1); Has 53 Blast hits to 53 proteins in 15 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 2; Plants - 28; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT4G20050.2p  transcript_id AT4G20050.2  protein_id AT4G20050.2p  transcript_id AT4G20050.2  
At4g20060	chr4:010859255	0.0	C/10859255-10859330,10858621-10859069,10858089-10858274,10857712-10857819,10857245-10857448,10854790-10857171	AT4G20060.1  CDS  gene_syn EMB1895, EMBRYO DEFECTIVE 1895, F18F4.160, F18F4_160  gene EMB1895  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product EMB1895 (EMBRYO DEFECTIVE 1895); binding  note EMBRYO DEFECTIVE 1895 (EMB1895); FUNCTIONS IN: binding; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 168 Blast hits to 125 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 143; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G20060.1p  transcript_id AT4G20060.1  protein_id AT4G20060.1p  transcript_id AT4G20060.1  
At4g20070	chr4:010861548	0.0	W/10861548-10861773,10861948-10862036,10862398-10862501,10862599-10862683,10862781-10862897,10862990-10863099,10863180-10863285,10863405-10863491,10863572-10863814,10863910-10864035,10864124-10864285,10864407-10864529	AT4G20070.1  CDS  gene_syn ATAAH, Arabidopsis thaliana Allantoate Amidohydrolase, F18F4.170, F18F4_170  gene ATAAH  function The gene encoding Arabidopsis thaliana Allantoate Amidohydrolase (AtAAH)which catalyzes the allantoate deiminase reaction (EC 3.5.3.9)is expressed in all parts of the plant being consistent with a function in purine turnover in Arabidopsis.  go_component endoplasmic reticulum|GO:0005783|18065556|IDA  go_process proteolysis|GO:0006508||ISS  go_process ureide catabolic process|GO:0010136|16496096|IMP  go_function metallopeptidase activity|GO:0008237||ISS  go_function allantoate deiminase activity|GO:0047652|16496096|IGI  go_function allantoate deiminase activity|GO:0047652|18065556|IDA  product ATAAH (Arabidopsis thaliana Allantoate Amidohydrolase); allantoate deiminase/ metallopeptidase  note Arabidopsis thaliana Allantoate Amidohydrolase (ATAAH); FUNCTIONS IN: allantoate deiminase activity, metallopeptidase activity; INVOLVED IN: proteolysis, ureide catabolic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M20 (InterPro:IPR002933), ArgE/DapE/ACY1/CPG2/YscS, conserved site (InterPro:IPR001261), Amidase, hydantoinase/carbamoylase (InterPro:IPR010158), Peptidase M20, dimerisation (InterPro:IPR011650); BEST Arabidopsis thaliana protein match is: UAH (UREIDOGLYCOLATE AMIDOHYDROLASE); allantoate deiminase/ metallopeptidase (TAIR:AT5G43600.1); Has 2334 Blast hits to 2322 proteins in 519 species: Archae - 9; Bacteria - 1436; Metazoa - 29; Fungi - 112; Plants - 41; Viruses - 0; Other Eukaryotes - 707 (source: NCBI BLink).  protein_id AT4G20070.1p  transcript_id AT4G20070.1  protein_id AT4G20070.1p  transcript_id AT4G20070.1  
At4g20080	chr4:010865295	0.0	W/10865295-10867619	AT4G20080.1  CDS  gene_syn F18F4.180, F18F4_180  go_component cellular_component|GO:0005575||ND  product C2 domain-containing protein  note C2 domain-containing protein; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal, plant (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT3G57880.1); Has 809 Blast hits to 681 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 352; Fungi - 14; Plants - 391; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT4G20080.1p  transcript_id AT4G20080.1  protein_id AT4G20080.1p  transcript_id AT4G20080.1  
At4g20090	chr4:010868400	0.0	C/10868400-10870382	AT4G20090.1  CDS  gene_syn EMB1025, F18F4.190, F18F4_190, embryo defective 1025  gene EMB1025  go_process embryonic development ending in seed dormancy|GO:0009793|15647901|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product EMB1025 (embryo defective 1025)  note embryo defective 1025 (EMB1025); INVOLVED IN: embryonic development ending in seed dormancy; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G64320.1); Has 21882 Blast hits to 5919 proteins in 183 species: Archae - 2; Bacteria - 22; Metazoa - 670; Fungi - 517; Plants - 19658; Viruses - 0; Other Eukaryotes - 1013 (source: NCBI BLink).  protein_id AT4G20090.1p  transcript_id AT4G20090.1  protein_id AT4G20090.1p  transcript_id AT4G20090.1  
At4g20095	chr4:010872941	0.0	C/10872941-10873072,10872406-10872607,10872201-10872322,10872063-10872137,10871734-10871952	AT4G20095.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29550.1); Has 59 Blast hits to 58 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G20095.2p  transcript_id AT4G20095.2  protein_id AT4G20095.2p  transcript_id AT4G20095.2  
At4g20095	chr4:010872941	0.0	C/10872941-10873072,10872717-10872845,10872406-10872607,10872180-10872322	AT4G20095.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29550.1); Has 39 Blast hits to 39 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G20095.1p  transcript_id AT4G20095.1  protein_id AT4G20095.1p  transcript_id AT4G20095.1  
At4g20095	chr4:010872941	0.0	C/10872941-10873072,10872717-10872845,10872406-10872607,10872201-10872322,10872063-10872137,10871734-10871952	AT4G20095.3  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29550.1); Has 67 Blast hits to 66 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G20095.3p  transcript_id AT4G20095.3  protein_id AT4G20095.3p  transcript_id AT4G20095.3  
At4g20100	chr4:010873999	0.0	C/10873999-10874865	AT4G20100.1  CDS  gene_syn F1C12.1  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product PQ-loop repeat family protein / transmembrane family protein  note PQ-loop repeat family protein / transmembrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cystinosin/ERS1p repeat (InterPro:IPR006603); BEST Arabidopsis thaliana protein match is: PQ-loop repeat family protein / transmembrane family protein (TAIR:AT2G41050.1); Has 532 Blast hits to 450 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 316; Plants - 52; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT4G20100.1p  transcript_id AT4G20100.1  protein_id AT4G20100.1p  transcript_id AT4G20100.1  
At4g20110	chr4:010875567	0.0	W/10875567-10875864,10876097-10876789,10876877-10876965,10877046-10877115,10877200-10877360,10877518-10877599,10877690-10877772,10877864-10877927,10878026-10878154,10878240-10878343,10878441-10878545	AT4G20110.1  CDS  gene_syn F1C12.2  go_component membrane|GO:0016020|17432890|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function calcium ion binding|GO:0005509||IEA  go_component trans-Golgi network|GO:0005802|10871276|ISS  go_component integral to plasma membrane|GO:0005887||ISS  go_component Golgi transport complex|GO:0017119|10888666|IPI  go_process protein targeting to vacuole|GO:0006623|10561538|ISS  go_process protein targeting to vacuole|GO:0006623|10871276|TAS  go_process intracellular protein transport|GO:0006886||ISS  product vacuolar sorting receptor, putative  note vacuolar sorting receptor, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: intracellular protein transport, N-terminal protein myristoylation, protein targeting to vacuole; LOCATED IN: trans-Golgi network, integral to plasma membrane, Golgi transport complex, membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), EGF-type aspartate/asparagine hydroxylation conserved site (InterPro:IPR000152), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-like, type 3 (InterPro:IPR000742), Growth factor, receptor (InterPro:IPR009030), EGF-like region, conserved site (InterPro:IPR013032); BEST Arabidopsis thaliana protein match is: vacuolar sorting receptor, putative (TAIR:AT1G30900.1); Has 12725 Blast hits to 6020 proteins in 214 species: Archae - 2; Bacteria - 93; Metazoa - 11881; Fungi - 8; Plants - 289; Viruses - 0; Other Eukaryotes - 452 (source: NCBI BLink).  protein_id AT4G20110.1p  transcript_id AT4G20110.1  protein_id AT4G20110.1p  transcript_id AT4G20110.1  
At4g20115	chr4:010878724	0.0	C/10878724-10878797	AT4G20115.1  tRNA  gene_syn 67129.TRNA-THR-1, 67130.TRNA-THR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Thr (anticodon: AGT)  transcript_id AT4G20115.1  
At4g20130	chr4:010878914	0.0	W/10878914-10878970,10879087-10879242,10879656-10879793,10879876-10880001,10880086-10880214,10880315-10880404,10880493-10880643,10880750-10880859,10880935-10881006,10881100-10881205,10881290-10881484,10881576-10881697	AT4G20130.1  CDS  gene_syn F1C12.4, PLASTID TRANSCRIPTIONALLY ACTIVE14, PTAC14  gene PTAC14  go_component nucleoid|GO:0009295|16326926|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component plastid chromosome|GO:0009508|16326926|IDA  product PTAC14 (PLASTID TRANSCRIPTIONALLY ACTIVE14)  note PLASTID TRANSCRIPTIONALLY ACTIVE14 (PTAC14); LOCATED IN: plastid chromosome, chloroplast, nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214); Has 307 Blast hits to 307 proteins in 69 species: Archae - 0; Bacteria - 0; Metazoa - 50; Fungi - 57; Plants - 158; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT4G20130.1p  transcript_id AT4G20130.1  protein_id AT4G20130.1p  transcript_id AT4G20130.1  
At4g20140	chr4:010884220	0.0	W/10884220-10887616,10887693-10888045	AT4G20140.1  CDS  gene_syn F1C12.60, F1C12_60, GASSHO1, GSO1  gene GSO1  function Encodes GASSHO1 (GSO1), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO1 and a homolog GSO2 (At5g44700) are required for the formation of a normal epidermal surface during embryogenesis.  go_component endomembrane system|GO:0012505||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_process epidermis development|GO:0008544|18088309|IGI  go_process embryonic development|GO:0009790|18088309|IGI  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product GSO1 (GASSHO1); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note GASSHO1 (GSO1); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: embryonic development, transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation, epidermis development; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591); BEST Arabidopsis thaliana protein match is: GSO2 (GASSHO 2); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT5G44700.1); Has 206878 Blast hits to 104047 proteins in 3542 species: Archae - 114; Bacteria - 16732; Metazoa - 84029; Fungi - 7830; Plants - 72788; Viruses - 382; Other Eukaryotes - 25003 (source: NCBI BLink).  protein_id AT4G20140.1p  transcript_id AT4G20140.1  protein_id AT4G20140.1p  transcript_id AT4G20140.1  
At4g20150	chr4:010889410	0.0	C/10889410-10889500,10889152-10889289,10888529-10888545	AT4G20150.1  CDS  gene_syn F1C12.70, F1C12_70  go_component plasma membrane|GO:0005886|17151019|IDA  go_component mitochondrion|GO:0005739|12837548|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane, respiratory chain complex I; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 26 Blast hits to 26 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G20150.1p  transcript_id AT4G20150.1  protein_id AT4G20150.1p  transcript_id AT4G20150.1  
At4g20160	chr4:010890983	0.0	W/10890983-10891897,10891986-10892113,10892180-10894060,10894169-10894517,10894595-10894742,10894826-10894971	AT4G20160.1  CDS  gene_syn F1C12.80, F1C12_80  go_component chloroplast|GO:0009507|15028209|IDA  product unknown protein  note LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G30860.1); Has 56595 Blast hits to 33217 proteins in 1313 species: Archae - 191; Bacteria - 4343; Metazoa - 25320; Fungi - 4691; Plants - 1995; Viruses - 268; Other Eukaryotes - 19787 (source: NCBI BLink).  protein_id AT4G20160.1p  transcript_id AT4G20160.1  protein_id AT4G20160.1p  transcript_id AT4G20160.1  
At4g20170	chr4:010896810	0.0	W/10896810-10897978,10898449-10898794	AT4G20170.1  CDS  gene_syn F1C12.90, F1C12_90  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44670.1); Has 134 Blast hits to 134 proteins in 21 species: Archae - 0; Bacteria - 14; Metazoa - 35; Fungi - 2; Plants - 74; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT4G20170.1p  transcript_id AT4G20170.1  protein_id AT4G20170.1p  transcript_id AT4G20170.1  
At4g20180	chr4:010901103	0.0	W/10901103-10904404	AT4G20180.1  mRNA_TE_gene  pseudo  gene_syn F1C12.100, F1C12_100  note Transposable element gene, copia-like retrotransposon family, has a 7.2e-10 P-value blast match to GB:AAC24836 pol polyprotein (Ty1_Copia-element) (Candida albicans)  
At4g20190	chr4:010906508	0.0	C/10906508-10907677	AT4G20190.1  CDS  gene_syn F1C12.110, F1C12_110  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44660.1); Has 377 Blast hits to 225 proteins in 47 species: Archae - 0; Bacteria - 15; Metazoa - 190; Fungi - 13; Plants - 26; Viruses - 3; Other Eukaryotes - 130 (source: NCBI BLink).  protein_id AT4G20190.1p  transcript_id AT4G20190.1  protein_id AT4G20190.1p  transcript_id AT4G20190.1  
At4g20200	chr4:010910900	0.0	C/10910900-10911151,10910532-10910808,10910038-10910416,10909726-10909947,10909492-10909633,10909050-10909298,10908672-10908965	AT4G20200.1  CDS  gene_syn F1C12.120, F1C12_120  go_process metabolic process|GO:0008152||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function lyase activity|GO:0016829||IEA  product terpene synthase/cyclase family protein  note terpene synthase/cyclase family protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase/cyclase family protein (TAIR:AT4G20230.1); Has 1055 Blast hits to 1046 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 1; Plants - 1050; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G20200.1p  transcript_id AT4G20200.1  protein_id AT4G20200.1p  transcript_id AT4G20200.1  
At4g20210	chr4:010918043	0.0	C/10918043-10918282,10917650-10917926,10917172-10917550,10916847-10917068,10916583-10916724,10914490-10914738,10913613-10913906	AT4G20210.1  CDS  gene_syn F1C12.130, F1C12_130  go_component chloroplast|GO:0009507||IEA  go_process metabolic process|GO:0008152||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function lyase activity|GO:0016829||IEA  product terpene synthase/cyclase family protein  note terpene synthase/cyclase family protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase/cyclase family protein (TAIR:AT4G20200.1); Has 1053 Blast hits to 1040 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1050; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G20210.1p  transcript_id AT4G20210.1  protein_id AT4G20210.1p  transcript_id AT4G20210.1  
At4g20220	chr4:010918676	0.0	W/10918676-10918943,10920542-10920659,10922166-10922207,10922348-10922396	AT4G20220.1  CDS  gene_syn F1C12.140, F1C12_140  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Reverse transcriptase, RNA-dependent DNA polymerase (InterPro:IPR013103); Has 58 Blast hits to 58 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G20220.1p  transcript_id AT4G20220.1  protein_id AT4G20220.1p  transcript_id AT4G20220.1  
At4g20230	chr4:010926494	0.0	C/10926494-10926751,10926146-10926422,10925676-10926054,10925356-10925577,10925128-10925269,10924633-10924881,10924242-10924544	AT4G20230.1  CDS  gene_syn F1C12.150, F1C12_150  go_process metabolic process|GO:0008152||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function lyase activity|GO:0016829||IEA  product terpene synthase/cyclase family protein  note terpene synthase/cyclase family protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase/cyclase family protein (TAIR:AT4G20200.1); Has 1042 Blast hits to 1028 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 1036; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G20230.1p  transcript_id AT4G20230.1  protein_id AT4G20230.1p  transcript_id AT4G20230.1  
At4g20235	chr4:010930885	0.0	C/10930885-10931277,10930282-10930403,10930011-10930207,10929720-10929769,10929146-10929406	AT4G20235.1  CDS  gene_syn CYP71A28, F1C12.160B  gene CYP71A28  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product CYP71A28; electron carrier/ heme binding / iron ion binding / monooxygenase  note CYP71A28; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, heme binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP71A14; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT5G24960.1).  protein_id AT4G20235.1p  transcript_id AT4G20235.1  protein_id AT4G20235.1p  transcript_id AT4G20235.1  
At4g20240	chr4:010933826	0.0	C/10933826-10934212,10932615-10933109,10932023-10932301,10931745-10931939	AT4G20240.1  CDS  gene_syn CYP71A27, F1C12.160, F1C12.160A, F1C12_160  gene CYP71A27  function putative cytochrome P450  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71A27; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71A27; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP71A20; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G13310.1); Has 19600 Blast hits to 19492 proteins in 1080 species: Archae - 19; Bacteria - 1378; Metazoa - 9387; Fungi - 2937; Plants - 5309; Viruses - 3; Other Eukaryotes - 567 (source: NCBI BLink).  protein_id AT4G20240.1p  transcript_id AT4G20240.1  protein_id AT4G20240.1p  transcript_id AT4G20240.1  
At4g20250	chr4:010940413	0.0	C/10940413-10940528,10937990-10938041	AT4G20250.1  CDS  gene_syn F1C12.170, F1C12_170  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G20250.1p  transcript_id AT4G20250.1  protein_id AT4G20250.1p  transcript_id AT4G20250.1  
At4g20260	chr4:010941593	0.0	W/10941593-10941703,10942032-10942121,10942210-10942297,10942836-10943227	AT4G20260.4  CDS  gene_syn ARABIDOPSIS THALIANA PLASMA-MEMBRANE ASSOCIATED CATION-BINDING PROTEIN 1, ATPCAP1, F1C12.180, F1C12_180, PCAP1, PLASMA-MEMBRANE ASSOCIATED CATION-BINDING PROTEIN 1  gene PCAP1  function Encodes a Ca2+ and Cu2+ binding protein. N-terminal myristylation on glycine 2 appears to enable it to associate tightly with the plasma membrane. Recombinant PCaP1 interacts strongly with phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2) and PtdIns (3,4,5)P3, and weakly with PtdIns(3,5)P2 and PtdIns(4,5). It also interacts with calmodulin (CaM) in a calcium-dependent manner. CaM does not interfere with PCaP1 membrane localization but does weaken interactions between it and the PtdInsPs. PCaP1 has an apparent Kd of 10 uM for Cu2+ and can bind six ions per protein. Transcript levels for PCaP1 first fall and then rise following exposure to CuCl2. Mannitol, sorbitol, and the flg22 oligopeptide also increase expression levels.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_component plasma membrane|GO:0005886||ISS  go_process response to cold|GO:0009409|14535880|IEP  go_process response to cold|GO:0009409|17264065|IEP  go_process N-terminal peptidyl-glycine N-myristoylation|GO:0018008|18397324|IDA  go_function copper ion binding|GO:0005507|18664522|IDA  go_function calcium ion binding|GO:0005509|17264065|IDA  go_function calmodulin binding|GO:0005516|18397324|IDA  go_function phosphatidylinositol-3,4,5-triphosphate binding|GO:0005547|18397324|IDA  go_function phosphatidylinositol-3,5-bisphosphate binding|GO:0080025|18397324|IDA  product DREPP plasma membrane polypeptide family protein  note PLASMA-MEMBRANE ASSOCIATED CATION-BINDING PROTEIN 1 (PCAP1); FUNCTIONS IN: phosphatidylinositol-3,4,5-triphosphate binding, copper ion binding, calmodulin binding, phosphatidylinositol-3,5-bisphosphate binding, calcium ion binding; INVOLVED IN: N-terminal peptidyl-glycine N-myristoylation, response to cold, defense response to bacterium; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 35 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DREPP plasma membrane polypeptide (InterPro:IPR008469); Has 5786 Blast hits to 3340 proteins in 393 species: Archae - 34; Bacteria - 725; Metazoa - 1693; Fungi - 625; Plants - 228; Viruses - 58; Other Eukaryotes - 2423 (source: NCBI BLink).  protein_id AT4G20260.4p  transcript_id AT4G20260.4  protein_id AT4G20260.4p  transcript_id AT4G20260.4  
At4g20260	chr4:010941593	0.0	W/10941593-10941703,10942032-10942121,10942213-10942297,10942836-10943227	AT4G20260.1  CDS  gene_syn ARABIDOPSIS THALIANA PLASMA-MEMBRANE ASSOCIATED CATION-BINDING PROTEIN 1, ATPCAP1, F1C12.180, F1C12_180, PCAP1, PLASMA-MEMBRANE ASSOCIATED CATION-BINDING PROTEIN 1  gene PCAP1  function Encodes a Ca2+ and Cu2+ binding protein. N-terminal myristylation on glycine 2 appears to enable it to associate tightly with the plasma membrane. Recombinant PCaP1 interacts strongly with phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2) and PtdIns (3,4,5)P3, and weakly with PtdIns(3,5)P2 and PtdIns(4,5). It also interacts with calmodulin (CaM) in a calcium-dependent manner. CaM does not interfere with PCaP1 membrane localization but does weaken interactions between it and the PtdInsPs. PCaP1 has an apparent Kd of 10 uM for Cu2+ and can bind six ions per protein. Transcript levels for PCaP1 first fall and then rise following exposure to CuCl2. Mannitol, sorbitol, and the flg22 oligopeptide also increase expression levels.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_component plasma membrane|GO:0005886||ISS  go_process response to cold|GO:0009409|14535880|IEP  go_process response to cold|GO:0009409|17264065|IEP  go_process N-terminal peptidyl-glycine N-myristoylation|GO:0018008|18397324|IDA  go_function copper ion binding|GO:0005507|18664522|IDA  go_function calcium ion binding|GO:0005509|17264065|IDA  go_function calmodulin binding|GO:0005516|18397324|IDA  go_function phosphatidylinositol-3,4,5-triphosphate binding|GO:0005547|18397324|IDA  go_function phosphatidylinositol-3,5-bisphosphate binding|GO:0080025|18397324|IDA  product DREPP plasma membrane polypeptide family protein  note PLASMA-MEMBRANE ASSOCIATED CATION-BINDING PROTEIN 1 (PCAP1); FUNCTIONS IN: phosphatidylinositol-3,4,5-triphosphate binding, copper ion binding, calmodulin binding, phosphatidylinositol-3,5-bisphosphate binding, calcium ion binding; INVOLVED IN: N-terminal peptidyl-glycine N-myristoylation, response to cold, defense response to bacterium; LOCATED IN: plasma membrane, chloroplast, vacuole; EXPRESSED IN: 35 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DREPP plasma membrane polypeptide (InterPro:IPR008469); Has 5786 Blast hits to 3340 proteins in 407 species: Archae - 35; Bacteria - 736; Metazoa - 1698; Fungi - 594; Plants - 212; Viruses - 58; Other Eukaryotes - 2453 (source: NCBI BLink).  protein_id AT4G20260.1p  transcript_id AT4G20260.1  protein_id AT4G20260.1p  transcript_id AT4G20260.1  
At4g20260	chr4:010941593	0.0	W/10941593-10941703,10942032-10942121,10942213-10942297,10942836-10943227	AT4G20260.2  CDS  gene_syn ARABIDOPSIS THALIANA PLASMA-MEMBRANE ASSOCIATED CATION-BINDING PROTEIN 1, ATPCAP1, F1C12.180, F1C12_180, PCAP1, PLASMA-MEMBRANE ASSOCIATED CATION-BINDING PROTEIN 1  gene PCAP1  function Encodes a Ca2+ and Cu2+ binding protein. N-terminal myristylation on glycine 2 appears to enable it to associate tightly with the plasma membrane. Recombinant PCaP1 interacts strongly with phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2) and PtdIns (3,4,5)P3, and weakly with PtdIns(3,5)P2 and PtdIns(4,5). It also interacts with calmodulin (CaM) in a calcium-dependent manner. CaM does not interfere with PCaP1 membrane localization but does weaken interactions between it and the PtdInsPs. PCaP1 has an apparent Kd of 10 uM for Cu2+ and can bind six ions per protein. Transcript levels for PCaP1 first fall and then rise following exposure to CuCl2. Mannitol, sorbitol, and the flg22 oligopeptide also increase expression levels.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_component plasma membrane|GO:0005886||ISS  go_process response to cold|GO:0009409|14535880|IEP  go_process response to cold|GO:0009409|17264065|IEP  go_process N-terminal peptidyl-glycine N-myristoylation|GO:0018008|18397324|IDA  go_function copper ion binding|GO:0005507|18664522|IDA  go_function calcium ion binding|GO:0005509|17264065|IDA  go_function calmodulin binding|GO:0005516|18397324|IDA  go_function phosphatidylinositol-3,4,5-triphosphate binding|GO:0005547|18397324|IDA  go_function phosphatidylinositol-3,5-bisphosphate binding|GO:0080025|18397324|IDA  product DREPP plasma membrane polypeptide family protein  note PLASMA-MEMBRANE ASSOCIATED CATION-BINDING PROTEIN 1 (PCAP1); FUNCTIONS IN: phosphatidylinositol-3,4,5-triphosphate binding, copper ion binding, calmodulin binding, phosphatidylinositol-3,5-bisphosphate binding, calcium ion binding; INVOLVED IN: N-terminal peptidyl-glycine N-myristoylation, response to cold, defense response to bacterium; LOCATED IN: plasma membrane, chloroplast, vacuole; EXPRESSED IN: 35 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DREPP plasma membrane polypeptide (InterPro:IPR008469); Has 5786 Blast hits to 3340 proteins in 407 species: Archae - 35; Bacteria - 736; Metazoa - 1698; Fungi - 594; Plants - 212; Viruses - 58; Other Eukaryotes - 2453 (source: NCBI BLink).  protein_id AT4G20260.2p  transcript_id AT4G20260.2  protein_id AT4G20260.2p  transcript_id AT4G20260.2  
At4g20260	chr4:010941593	0.0	W/10941593-10941703,10942032-10942121,10942213-10942297,10942836-10943227	AT4G20260.3  CDS  gene_syn ARABIDOPSIS THALIANA PLASMA-MEMBRANE ASSOCIATED CATION-BINDING PROTEIN 1, ATPCAP1, F1C12.180, F1C12_180, PCAP1, PLASMA-MEMBRANE ASSOCIATED CATION-BINDING PROTEIN 1  gene PCAP1  function Encodes a Ca2+ and Cu2+ binding protein. N-terminal myristylation on glycine 2 appears to enable it to associate tightly with the plasma membrane. Recombinant PCaP1 interacts strongly with phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2) and PtdIns (3,4,5)P3, and weakly with PtdIns(3,5)P2 and PtdIns(4,5). It also interacts with calmodulin (CaM) in a calcium-dependent manner. CaM does not interfere with PCaP1 membrane localization but does weaken interactions between it and the PtdInsPs. PCaP1 has an apparent Kd of 10 uM for Cu2+ and can bind six ions per protein. Transcript levels for PCaP1 first fall and then rise following exposure to CuCl2. Mannitol, sorbitol, and the flg22 oligopeptide also increase expression levels.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_component plasma membrane|GO:0005886||ISS  go_process response to cold|GO:0009409|14535880|IEP  go_process response to cold|GO:0009409|17264065|IEP  go_process N-terminal peptidyl-glycine N-myristoylation|GO:0018008|18397324|IDA  go_function copper ion binding|GO:0005507|18664522|IDA  go_function calcium ion binding|GO:0005509|17264065|IDA  go_function calmodulin binding|GO:0005516|18397324|IDA  go_function phosphatidylinositol-3,4,5-triphosphate binding|GO:0005547|18397324|IDA  go_function phosphatidylinositol-3,5-bisphosphate binding|GO:0080025|18397324|IDA  product DREPP plasma membrane polypeptide family protein  note PLASMA-MEMBRANE ASSOCIATED CATION-BINDING PROTEIN 1 (PCAP1); FUNCTIONS IN: phosphatidylinositol-3,4,5-triphosphate binding, copper ion binding, calmodulin binding, phosphatidylinositol-3,5-bisphosphate binding, calcium ion binding; INVOLVED IN: N-terminal peptidyl-glycine N-myristoylation, response to cold, defense response to bacterium; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 35 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DREPP plasma membrane polypeptide (InterPro:IPR008469); Has 5786 Blast hits to 3340 proteins in 407 species: Archae - 35; Bacteria - 736; Metazoa - 1698; Fungi - 594; Plants - 212; Viruses - 58; Other Eukaryotes - 2453 (source: NCBI BLink).  protein_id AT4G20260.3p  transcript_id AT4G20260.3  protein_id AT4G20260.3p  transcript_id AT4G20260.3  
At4g20270	chr4:010949822	0.0	W/10949822-10952471,10952596-10952924	AT4G20270.1  CDS  gene_syn BAM3, BARELY ANY MERISTEM 3, F1C12.190, F1C12_190  gene BAM3  function Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function.  go_component endomembrane system|GO:0012505||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_process regulation of meristem growth|GO:0010075|16367950|IGI  go_process leaf development|GO:0048366|16367950|IGI  go_process floral organ development|GO:0048437|16367950|IGI  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product BAM3 (BARELY ANY MERISTEM 3); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase  note BARELY ANY MERISTEM 3 (BAM3); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: regulation of meristem growth, transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation, leaf development, floral organ development; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: BAM1 (BARELY ANY MERISTEM 1); ATP binding / kinase/ protein serine/threonine kinase (TAIR:AT5G65700.1); Has 150585 Blast hits to 100080 proteins in 3566 species: Archae - 88; Bacteria - 12300; Metazoa - 60643; Fungi - 7079; Plants - 50375; Viruses - 399; Other Eukaryotes - 19701 (source: NCBI BLink).  protein_id AT4G20270.1p  transcript_id AT4G20270.1  protein_id AT4G20270.1p  transcript_id AT4G20270.1  
At4g20280	chr4:010953792	0.0	W/10953792-10954108,10954179-10954266,10954355-10954454,10954537-10954664	AT4G20280.1  CDS  gene_syn TAF11, TBP-ASSOCIATED FACTOR 11  gene TAF11  function Encodes TAF11, a putative TBP-associated factor (TBP: TATA binding protein).  go_component nucleus|GO:0005634||IEA  go_process transcription initiation from RNA polymerase II promoter|GO:0006367||IEA  go_function DNA binding|GO:0003677||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  go_process transcription|GO:0006350||ISS  go_function transcription initiation factor activity|GO:0016986||ISS  product TAF11 (TBP-ASSOCIATED FACTOR 11); DNA binding / RNA polymerase II transcription factor/ transcription initiation factor  note TBP-ASSOCIATED FACTOR 11 (TAF11); FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity, DNA binding; INVOLVED IN: transcription initiation from RNA polymerase II promoter, transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TAFII28-like protein (InterPro:IPR006809), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: TAF11b (TBP-ASSOCIATED FACTOR 11b); DNA binding / RNA polymerase II transcription factor/ transcription initiation factor (TAIR:AT1G20000.1); Has 381 Blast hits to 376 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 217; Fungi - 90; Plants - 35; Viruses - 2; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT4G20280.1p  transcript_id AT4G20280.1  protein_id AT4G20280.1p  transcript_id AT4G20280.1  
At4g20290	chr4:010955159	0.0	C/10955159-10955584	AT4G20290.1  CDS  gene_syn F1C12.200, F1C12_200  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 6 Blast hits to 6 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G20290.1p  transcript_id AT4G20290.1  protein_id AT4G20290.1p  transcript_id AT4G20290.1  
At4g20300	chr4:010955813	0.0	W/10955813-10955820,10956285-10956818,10957705-10958086,10958192-10958269,10958809-10958865	AT4G20300.2  CDS  gene_syn F1C12.211, F1C12_211  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55340.2); Has 456 Blast hits to 442 proteins in 73 species: Archae - 0; Bacteria - 7; Metazoa - 184; Fungi - 40; Plants - 150; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT4G20300.2p  transcript_id AT4G20300.2  protein_id AT4G20300.2p  transcript_id AT4G20300.2  
At4g20300	chr4:010955813	0.0	W/10955813-10955820,10956285-10956818,10957705-10958086,10958192-10958287	AT4G20300.1  CDS  gene_syn F1C12.211, F1C12_211  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55340.2); Has 446 Blast hits to 432 proteins in 73 species: Archae - 0; Bacteria - 7; Metazoa - 176; Fungi - 40; Plants - 150; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT4G20300.1p  transcript_id AT4G20300.1  protein_id AT4G20300.1p  transcript_id AT4G20300.1  
At4g20310	chr4:010961639	0.0	W/10961639-10961950,10962021-10962112,10962238-10962385,10962461-10962541,10962625-10963056,10963133-10963226,10963302-10963432,10963514-10963690	AT4G20310.2  CDS  gene_syn F1C12.220, F1C12_220  go_component membrane|GO:0016020||IEA  go_process proteolysis|GO:0006508||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  product metalloendopeptidase  note metalloendopeptidase; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M50 (InterPro:IPR008915), Peptidase M50, mammalian sterol-regulatory element binding protein (InterPro:IPR001193).  protein_id AT4G20310.2p  transcript_id AT4G20310.2  protein_id AT4G20310.2p  transcript_id AT4G20310.2  
At4g20310	chr4:010961639	0.0	W/10961639-10961950,10962021-10962112,10962238-10962385,10962461-10962541,10962625-10963056,10963167-10963283	AT4G20310.1  CDS  gene_syn F1C12.220, F1C12_220  go_component membrane|GO:0016020||IEA  go_process proteolysis|GO:0006508||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  product metalloendopeptidase  note metalloendopeptidase; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M50, mammalian sterol-regulatory element binding protein (InterPro:IPR001193), Peptidase M50 (InterPro:IPR008915); Has 246 Blast hits to 246 proteins in 97 species: Archae - 81; Bacteria - 12; Metazoa - 92; Fungi - 6; Plants - 29; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT4G20310.1p  transcript_id AT4G20310.1  protein_id AT4G20310.1p  transcript_id AT4G20310.1  
At4g20310	chr4:010962251	0.0	W/10962251-10962385,10962461-10962541,10962625-10963056,10963133-10963432,10963514-10963690	AT4G20310.3  CDS  gene_syn F1C12.220, F1C12_220  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  product metalloendopeptidase  note metalloendopeptidase; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M50 (InterPro:IPR008915).  protein_id AT4G20310.3p  transcript_id AT4G20310.3  protein_id AT4G20310.3p  transcript_id AT4G20310.3  
At4g20320	chr4:010974980	0.0	W/10974980-10975097,10975535-10975614,10975732-10975818,10975899-10975949,10976054-10976171,10976265-10976321,10976415-10976479,10976554-10976637,10976724-10976774,10976855-10976917,10977007-10977053,10977149-10977218,10977311-10977373,10977525-10977614,10977701-10977739,10977833-10978060,10978153-10978238,10978332-10978380,10978481-10978561,10978634-10978727,10978826-10978998	AT4G20320.1  CDS  gene_syn F1C12.230, F1C12_230  go_process pyrimidine nucleotide biosynthetic process|GO:0006221||IEA  go_process pyrimidine ribonucleotide metabolic process|GO:0009218||IEA  go_function catalytic activity|GO:0003824||IEA  go_function CTP synthase activity|GO:0003883||IEA  go_component cellular_component|GO:0005575||ND  go_function CTP synthase activity|GO:0003883||ISS  product CTP synthase/ catalytic  note CTP synthase/ catalytic; FUNCTIONS IN: CTP synthase activity, catalytic activity; INVOLVED IN: pyrimidine ribonucleotide metabolic process, pyrimidine nucleotide biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), CTP synthase (InterPro:IPR004468), CTP synthase, N-terminal (InterPro:IPR017456), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: CTP synthase, putative / UTP--ammonia ligase, putative (TAIR:AT1G30820.1); Has 8033 Blast hits to 8003 proteins in 1728 species: Archae - 146; Bacteria - 2976; Metazoa - 225; Fungi - 172; Plants - 87; Viruses - 0; Other Eukaryotes - 4427 (source: NCBI BLink).  protein_id AT4G20320.1p  transcript_id AT4G20320.1  protein_id AT4G20320.1p  transcript_id AT4G20320.1  
At4g20320	chr4:010974980	0.0	W/10974980-10975097,10975535-10975614,10975732-10975818,10975899-10975949,10976054-10976171,10976265-10976321,10976415-10976479,10976554-10976637,10976724-10976774,10976855-10976917,10977007-10977053,10977149-10977218,10977311-10977373,10977525-10977614,10977701-10977739,10977833-10978060,10978153-10978238,10978332-10978380,10978481-10978561,10978634-10978727,10978826-10978998	AT4G20320.2  CDS  gene_syn F1C12.230, F1C12_230  go_process pyrimidine nucleotide biosynthetic process|GO:0006221||IEA  go_function catalytic activity|GO:0003824||IEA  go_function CTP synthase activity|GO:0003883||IEA  go_component cellular_component|GO:0005575||ND  go_function CTP synthase activity|GO:0003883||ISS  product CTP synthase/ catalytic  note CTP synthase/ catalytic; FUNCTIONS IN: CTP synthase activity, catalytic activity; INVOLVED IN: pyrimidine nucleotide biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), CTP synthase (InterPro:IPR004468), CTP synthase, N-terminal (InterPro:IPR017456), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: CTP synthase, putative / UTP--ammonia ligase, putative (TAIR:AT1G30820.1); Has 8033 Blast hits to 8003 proteins in 1728 species: Archae - 146; Bacteria - 2976; Metazoa - 225; Fungi - 172; Plants - 87; Viruses - 0; Other Eukaryotes - 4427 (source: NCBI BLink).  protein_id AT4G20320.2p  transcript_id AT4G20320.2  protein_id AT4G20320.2p  transcript_id AT4G20320.2  
At4g20325	chr4:010980124	0.0	W/10980124-10980181,10980501-10980560,10980663-10980764,10980863-10980939,10981038-10981161,10981364-10981428,10981628-10981636	AT4G20325.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 134 Blast hits to 134 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 25; Plants - 16; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G20325.2p  transcript_id AT4G20325.2  protein_id AT4G20325.2p  transcript_id AT4G20325.2  
At4g20325	chr4:010980124	0.0	W/10980124-10980181,10980501-10980560,10980663-10980764,10980863-10980939,10981038-10981161,10981364-10981428,10981783-10981852,10981952-10982027,10982129-10982222,10982319-10982426	AT4G20325.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 147 Blast hits to 147 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 96; Fungi - 27; Plants - 18; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G20325.1p  transcript_id AT4G20325.1  protein_id AT4G20325.1p  transcript_id AT4G20325.1  
At4g20330	chr4:010983779	0.0	C/10983779-10984039,10983570-10983701,10983361-10983477,10982683-10983033	AT4G20330.1  CDS  gene_syn F9F13.2, F9F13_2  go_component transcription factor TFIIE complex|GO:0005673||IEA  go_process transcription initiation from RNA polymerase II promoter|GO:0006367||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  product transcription initiation factor-related  note transcription initiation factor-related; FUNCTIONS IN: RNA polymerase II transcription factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: transcription factor TFIIE complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIIE, beta subunit (InterPro:IPR016656), Transcription factor TFIIE beta subunit-like, DNA-binding (InterPro:IPR017935); BEST Arabidopsis thaliana protein match is: transcription initiation factor-related (TAIR:AT4G21010.1); Has 212 Blast hits to 212 proteins in 96 species: Archae - 0; Bacteria - 0; Metazoa - 99; Fungi - 68; Plants - 35; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT4G20330.1p  transcript_id AT4G20330.1  protein_id AT4G20330.1p  transcript_id AT4G20330.1  
At4g20340	chr4:010985011	0.0	W/10985011-10985066,10985185-10985304,10985425-10985545,10985725-10985838,10985963-10986072,10986165-10986348,10986580-10986774,10986886-10987107,10987215-10987419,10987648-10987748	AT4G20340.1  CDS  gene_syn F9F13.4, F9F13_4  go_component transcription factor TFIIE complex|GO:0005673||IEA  go_component endomembrane system|GO:0012505||IEA  go_process transcription initiation from RNA polymerase II promoter|GO:0006367||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  go_component transcription factor TFIIE complex|GO:0005673||ISS  go_function transcription initiation factor activity|GO:0016986||ISS  product RNA polymerase II transcription factor/ transcription initiation factor  note RNA polymerase II transcription factor/ transcription initiation factor; FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: endomembrane system, transcription factor TFIIE complex; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Transcription factor TFIIE, alpha subunit (InterPro:IPR002853), Transcription factor TFE/TFIIEalpha, HTH domain (InterPro:IPR017919); BEST Arabidopsis thaliana protein match is: transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein (TAIR:AT1G03280.1); Has 717 Blast hits to 614 proteins in 143 species: Archae - 3; Bacteria - 14; Metazoa - 310; Fungi - 133; Plants - 67; Viruses - 32; Other Eukaryotes - 158 (source: NCBI BLink).  protein_id AT4G20340.1p  transcript_id AT4G20340.1  protein_id AT4G20340.1p  transcript_id AT4G20340.1  
At4g20350	chr4:010988730	0.0	W/10988730-10988760,10988856-10988968,10989105-10989327,10989435-10989481,10989587-10989733	AT4G20350.1  CDS  gene_syn F9F13.6, F9F13_6  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; Has 207 Blast hits to 207 proteins in 95 species: Archae - 0; Bacteria - 14; Metazoa - 92; Fungi - 39; Plants - 23; Viruses - 3; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT4G20350.1p  transcript_id AT4G20350.1  protein_id AT4G20350.1p  transcript_id AT4G20350.1  
At4g20360	chr4:010990036	0.0	W/10990036-10991466	AT4G20360.1  CDS  gene_syn ARABIDOPSIS RAB GTPASE HOMOLOG E1B, ATRAB8D, ATRABE1B, F9F13.10, F9F13_10  gene ATRABE1B  go_component nucleus|GO:0005634|14617066|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component nucleoid|GO:0009295|16326926|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function translation elongation factor activity|GO:0003746||IEA  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_process peptidyl-cysteine S-nitrosylation|GO:0018119|18297659|IDA  go_function translation elongation factor activity|GO:0003746||ISS  product ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B); GTP binding / GTPase/ translation elongation factor  note ARABIDOPSIS RAB GTPASE HOMOLOG E1B (ATRABE1B); FUNCTIONS IN: GTP binding, translation elongation factor activity, GTPase activity; INVOLVED IN: peptidyl-cysteine S-nitrosylation; LOCATED IN: in 9 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, bacterial and organelle (InterPro:IPR004541), Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: elongation factor Tu, putative / EF-Tu, putative (TAIR:AT4G02930.1); Has 60789 Blast hits to 60738 proteins in 12836 species: Archae - 775; Bacteria - 22875; Metazoa - 13447; Fungi - 6921; Plants - 1294; Viruses - 5; Other Eukaryotes - 15472 (source: NCBI BLink).  protein_id AT4G20360.1p  transcript_id AT4G20360.1  protein_id AT4G20360.1p  transcript_id AT4G20360.1  
At4g20362	chr4:010991615	0.0	C/10991615-10992159	AT4G20362.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT4G20360  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G20362.1  
At4g20365	chr4:010993391	0.0	W/10993391-10998715	AT4G20365.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.7e-254 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element)  
At4g20370	chr4:011002765	0.0	C/11002765-11002965,11002058-11002119,11001493-11001533,11001011-11001234	AT4G20370.1  CDS  gene_syn F9F13.20, F9F13_20, TSF, TWIN SISTER OF FT  gene TSF  function Encodes a floral inducer that is a homolog of FT. Plants overexpressing this gene flower earlier than Col. Loss-of-function mutations flower later in short days. TSF and FT play overlapping roles in the promotion of flowering, with FT playing the dominant role.TSF sequences show extensive variation in different accessions and may contribute to quantitative variation in flowering time in these accessions. TSF has a complex pattern of spatial expression; it is expressed mainly in phloem and expression is regulated by daylength and vernalization.  go_component cellular_component|GO:0005575||ND  go_process positive regulation of flower development|GO:0009911|15618421|IMP  go_function phosphatidylethanolamine binding|GO:0008429||ISS  product TSF (TWIN SISTER OF FT); phosphatidylethanolamine binding  note TWIN SISTER OF FT (TSF); FUNCTIONS IN: phosphatidylethanolamine binding; INVOLVED IN: positive regulation of flower development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylethanolamine-binding, conserved site (InterPro:IPR001858), Phosphatidylethanolamine-binding protein PEBP (InterPro:IPR008914); BEST Arabidopsis thaliana protein match is: FT (FLOWERING LOCUS T); phosphatidylethanolamine binding / protein binding (TAIR:AT1G65480.1); Has 1278 Blast hits to 1275 proteins in 219 species: Archae - 0; Bacteria - 0; Metazoa - 528; Fungi - 78; Plants - 661; Viruses - 3; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT4G20370.1p  transcript_id AT4G20370.1  protein_id AT4G20370.1p  transcript_id AT4G20370.1  
At4g20380	chr4:011005012	0.0	W/11005012-11005150,11005240-11005344,11005834-11005973,11006074-11006145,11006238-11006309,11006397-11006438	AT4G20380.2  CDS  gene_syn F9F13.30, F9F13_30, LESION SIMULATING DISEASE, LSD1  function LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challenge  go_process response to superoxide|GO:0000303|8791589|IMP  go_process response to hypoxia|GO:0001666|18055613|IMP  go_process response to molecule of oomycetes origin|GO:0002240|16957775|IMP  go_process cell death|GO:0008219|9054508|IMP  go_process plant-type hypersensitive response|GO:0009626|16957775|IMP  go_process systemic acquired resistance, salicylic acid mediated signaling pathway|GO:0009862||IEP  go_process regulation of ethylene mediated signaling pathway|GO:0010104|18790826|IMP  go_process regulation of hydrogen peroxide metabolic process|GO:0010310|18055613|IMP  go_process regulation of 1-aminocyclopropane-1-carboxylate metabolic process|GO:0010602|18055613|IMP  go_process aerenchyma formation|GO:0010618|18055613|IMP  go_process regulation of programmed cell death|GO:0043067|18790826|IGI  go_function transcription factor activity|GO:0003700|10571865|TAS  product zinc finger protein (LSD1)  note LESION SIMULATING DISEASE (LSD1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 11 processes; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: LOL1 (LSD ONE LIKE 1); DNA binding (TAIR:AT1G32540.3); Has 234 Blast hits to 192 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT4G20380.2p  transcript_id AT4G20380.2  protein_id AT4G20380.2p  transcript_id AT4G20380.2  
At4g20380	chr4:011005012	0.0	W/11005012-11005150,11005240-11005344,11005834-11005973,11006074-11006145,11006238-11006309,11006397-11006438	AT4G20380.7  CDS  gene_syn F9F13.30, F9F13_30, LESION SIMULATING DISEASE, LSD1  function LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challenge  go_process response to superoxide|GO:0000303|8791589|IMP  go_process response to hypoxia|GO:0001666|18055613|IMP  go_process response to molecule of oomycetes origin|GO:0002240|16957775|IMP  go_process cell death|GO:0008219|9054508|IMP  go_process plant-type hypersensitive response|GO:0009626|16957775|IMP  go_process systemic acquired resistance, salicylic acid mediated signaling pathway|GO:0009862||IEP  go_process regulation of ethylene mediated signaling pathway|GO:0010104|18790826|IMP  go_process regulation of hydrogen peroxide metabolic process|GO:0010310|18055613|IMP  go_process regulation of 1-aminocyclopropane-1-carboxylate metabolic process|GO:0010602|18055613|IMP  go_process aerenchyma formation|GO:0010618|18055613|IMP  go_process regulation of programmed cell death|GO:0043067|18790826|IGI  go_function transcription factor activity|GO:0003700|10571865|TAS  product zinc finger protein (LSD1)  note LESION SIMULATING DISEASE (LSD1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 11 processes; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: LOL1 (LSD ONE LIKE 1); DNA binding (TAIR:AT1G32540.3); Has 234 Blast hits to 192 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT4G20380.7p  transcript_id AT4G20380.7  protein_id AT4G20380.7p  transcript_id AT4G20380.7  
At4g20380	chr4:011005027	0.0	W/11005027-11005150,11005240-11005344,11005430-11005461,11005557-11005602,11005834-11005973,11006074-11006145,11006238-11006309,11006397-11006438	AT4G20380.8  CDS  gene_syn F9F13.30, F9F13_30, LESION SIMULATING DISEASE, LSD1  function LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challenge  go_process response to superoxide|GO:0000303|8791589|IMP  go_process response to hypoxia|GO:0001666|18055613|IMP  go_process response to molecule of oomycetes origin|GO:0002240|16957775|IMP  go_process cell death|GO:0008219|9054508|IMP  go_process plant-type hypersensitive response|GO:0009626|16957775|IMP  go_process systemic acquired resistance, salicylic acid mediated signaling pathway|GO:0009862||IEP  go_process regulation of ethylene mediated signaling pathway|GO:0010104|18790826|IMP  go_process regulation of hydrogen peroxide metabolic process|GO:0010310|18055613|IMP  go_process regulation of 1-aminocyclopropane-1-carboxylate metabolic process|GO:0010602|18055613|IMP  go_process aerenchyma formation|GO:0010618|18055613|IMP  go_process regulation of programmed cell death|GO:0043067|18790826|IGI  go_function transcription factor activity|GO:0003700|10571865|TAS  product zinc finger protein (LSD1)  note zinc finger protein (LSD1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 11 processes; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: LOL1 (LSD ONE LIKE 1); DNA binding (TAIR:AT1G32540.3).  protein_id AT4G20380.8p  transcript_id AT4G20380.8  protein_id AT4G20380.8p  transcript_id AT4G20380.8  
At4g20380	chr4:011005027	0.0	W/11005027-11005150,11005240-11005344,11005834-11005973,11006074-11006145,11006238-11006309,11006397-11006438	AT4G20380.1  CDS  gene_syn F9F13.30, F9F13_30, LESION SIMULATING DISEASE, LSD1  function LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challenge  go_process response to superoxide|GO:0000303|8791589|IMP  go_process response to hypoxia|GO:0001666|18055613|IMP  go_process response to molecule of oomycetes origin|GO:0002240|16957775|IMP  go_process cell death|GO:0008219|9054508|IMP  go_process plant-type hypersensitive response|GO:0009626|16957775|IMP  go_process systemic acquired resistance, salicylic acid mediated signaling pathway|GO:0009862||IEP  go_process regulation of ethylene mediated signaling pathway|GO:0010104|18790826|IMP  go_process regulation of hydrogen peroxide metabolic process|GO:0010310|18055613|IMP  go_process regulation of 1-aminocyclopropane-1-carboxylate metabolic process|GO:0010602|18055613|IMP  go_process aerenchyma formation|GO:0010618|18055613|IMP  go_process regulation of programmed cell death|GO:0043067|18790826|IGI  go_function transcription factor activity|GO:0003700|10571865|TAS  product zinc finger protein (LSD1)  note LESION SIMULATING DISEASE (LSD1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 11 processes; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: LOL1 (LSD ONE LIKE 1); DNA binding (TAIR:AT1G32540.3); Has 233 Blast hits to 191 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT4G20380.1p  transcript_id AT4G20380.1  protein_id AT4G20380.1p  transcript_id AT4G20380.1  
At4g20380	chr4:011005027	0.0	W/11005027-11005150,11005240-11005344,11005834-11005973,11006074-11006145,11006238-11006309,11006397-11006438	AT4G20380.3  CDS  gene_syn F9F13.30, F9F13_30, LESION SIMULATING DISEASE, LSD1  function LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challenge  go_process response to superoxide|GO:0000303|8791589|IMP  go_process response to hypoxia|GO:0001666|18055613|IMP  go_process response to molecule of oomycetes origin|GO:0002240|16957775|IMP  go_process cell death|GO:0008219|9054508|IMP  go_process plant-type hypersensitive response|GO:0009626|16957775|IMP  go_process systemic acquired resistance, salicylic acid mediated signaling pathway|GO:0009862||IEP  go_process regulation of ethylene mediated signaling pathway|GO:0010104|18790826|IMP  go_process regulation of hydrogen peroxide metabolic process|GO:0010310|18055613|IMP  go_process regulation of 1-aminocyclopropane-1-carboxylate metabolic process|GO:0010602|18055613|IMP  go_process aerenchyma formation|GO:0010618|18055613|IMP  go_process regulation of programmed cell death|GO:0043067|18790826|IGI  go_function transcription factor activity|GO:0003700|10571865|TAS  product zinc finger protein (LSD1)  note LESION SIMULATING DISEASE (LSD1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 11 processes; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: LOL1 (LSD ONE LIKE 1); DNA binding (TAIR:AT1G32540.3); Has 233 Blast hits to 191 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT4G20380.3p  transcript_id AT4G20380.3  protein_id AT4G20380.3p  transcript_id AT4G20380.3  
At4g20380	chr4:011005027	0.0	W/11005027-11005150,11005240-11005344,11005834-11005973,11006074-11006145,11006238-11006309,11006397-11006438	AT4G20380.4  CDS  gene_syn F9F13.30, F9F13_30, LESION SIMULATING DISEASE, LSD1  function LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challenge  go_process response to superoxide|GO:0000303|8791589|IMP  go_process response to hypoxia|GO:0001666|18055613|IMP  go_process response to molecule of oomycetes origin|GO:0002240|16957775|IMP  go_process cell death|GO:0008219|9054508|IMP  go_process plant-type hypersensitive response|GO:0009626|16957775|IMP  go_process systemic acquired resistance, salicylic acid mediated signaling pathway|GO:0009862||IEP  go_process regulation of ethylene mediated signaling pathway|GO:0010104|18790826|IMP  go_process regulation of hydrogen peroxide metabolic process|GO:0010310|18055613|IMP  go_process regulation of 1-aminocyclopropane-1-carboxylate metabolic process|GO:0010602|18055613|IMP  go_process aerenchyma formation|GO:0010618|18055613|IMP  go_process regulation of programmed cell death|GO:0043067|18790826|IGI  go_function transcription factor activity|GO:0003700|10571865|TAS  product zinc finger protein (LSD1)  note LESION SIMULATING DISEASE (LSD1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 11 processes; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: LOL1 (LSD ONE LIKE 1); DNA binding (TAIR:AT1G32540.3); Has 233 Blast hits to 191 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT4G20380.4p  transcript_id AT4G20380.4  protein_id AT4G20380.4p  transcript_id AT4G20380.4  
At4g20380	chr4:011005027	0.0	W/11005027-11005150,11005240-11005344,11005834-11005973,11006074-11006145,11006238-11006309,11006397-11006438	AT4G20380.5  CDS  gene_syn F9F13.30, F9F13_30, LESION SIMULATING DISEASE, LSD1  function LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challenge  go_process response to superoxide|GO:0000303|8791589|IMP  go_process response to hypoxia|GO:0001666|18055613|IMP  go_process response to molecule of oomycetes origin|GO:0002240|16957775|IMP  go_process cell death|GO:0008219|9054508|IMP  go_process plant-type hypersensitive response|GO:0009626|16957775|IMP  go_process systemic acquired resistance, salicylic acid mediated signaling pathway|GO:0009862||IEP  go_process regulation of ethylene mediated signaling pathway|GO:0010104|18790826|IMP  go_process regulation of hydrogen peroxide metabolic process|GO:0010310|18055613|IMP  go_process regulation of 1-aminocyclopropane-1-carboxylate metabolic process|GO:0010602|18055613|IMP  go_process aerenchyma formation|GO:0010618|18055613|IMP  go_process regulation of programmed cell death|GO:0043067|18790826|IGI  go_function transcription factor activity|GO:0003700|10571865|TAS  product zinc finger protein (LSD1)  note LESION SIMULATING DISEASE (LSD1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 11 processes; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: LOL1 (LSD ONE LIKE 1); DNA binding (TAIR:AT1G32540.3); Has 233 Blast hits to 191 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT4G20380.5p  transcript_id AT4G20380.5  protein_id AT4G20380.5p  transcript_id AT4G20380.5  
At4g20380	chr4:011005027	0.0	W/11005027-11005150,11005240-11005344,11005834-11005973,11006074-11006145,11006238-11006309,11006397-11006438	AT4G20380.6  CDS  gene_syn F9F13.30, F9F13_30, LESION SIMULATING DISEASE, LSD1  function LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challenge  go_process response to superoxide|GO:0000303|8791589|IMP  go_process response to hypoxia|GO:0001666|18055613|IMP  go_process response to molecule of oomycetes origin|GO:0002240|16957775|IMP  go_process cell death|GO:0008219|9054508|IMP  go_process plant-type hypersensitive response|GO:0009626|16957775|IMP  go_process systemic acquired resistance, salicylic acid mediated signaling pathway|GO:0009862||IEP  go_process regulation of ethylene mediated signaling pathway|GO:0010104|18790826|IMP  go_process regulation of hydrogen peroxide metabolic process|GO:0010310|18055613|IMP  go_process regulation of 1-aminocyclopropane-1-carboxylate metabolic process|GO:0010602|18055613|IMP  go_process aerenchyma formation|GO:0010618|18055613|IMP  go_process regulation of programmed cell death|GO:0043067|18790826|IGI  go_function transcription factor activity|GO:0003700|10571865|TAS  product zinc finger protein (LSD1)  note LESION SIMULATING DISEASE (LSD1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 11 processes; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: LOL1 (LSD ONE LIKE 1); DNA binding (TAIR:AT1G32540.3); Has 233 Blast hits to 191 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT4G20380.6p  transcript_id AT4G20380.6  protein_id AT4G20380.6p  transcript_id AT4G20380.6  
At4g20390	chr4:011007068	0.0	W/11007068-11007279,11007371-11007494,11007612-11007869	AT4G20390.1  CDS  gene_syn F9F13.40, F9F13_40  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane family protein  note integral membrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: male gametophyte, sepal, hypocotyl, flower, root; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT5G44550.1); Has 259 Blast hits to 259 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 259; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G20390.1p  transcript_id AT4G20390.1  protein_id AT4G20390.1p  transcript_id AT4G20390.1  
At4g20400	chr4:011009004	0.0	W/11009004-11009045,11009187-11009258,11009596-11009673,11009774-11010280,11010410-11010634,11010895-11011056,11011205-11011573,11011764-11012580,11012672-11012775,11012879-11013076,11013298-11013588	AT4G20400.1  CDS  gene_syn F9F13.50, F9F13_50  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein  note transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), FY-rich, C-terminal (InterPro:IPR003889), FY-rich, N-terminal (InterPro:IPR003888), Transcription factor jumonji, JmjN (InterPro:IPR003349), Zinc finger, C5HC2-type (InterPro:IPR004198), FY-rich, C-terminal subgroup (InterPro:IPR018516), Transcription factor jumonji (InterPro:IPR013129), FY-rich, N-terminal subgroup (InterPro:IPR018518); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT1G30810.1); Has 1555 Blast hits to 1142 proteins in 134 species: Archae - 0; Bacteria - 0; Metazoa - 939; Fungi - 323; Plants - 160; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).  protein_id AT4G20400.1p  transcript_id AT4G20400.1  protein_id AT4G20400.1p  transcript_id AT4G20400.1  
At4g20400	chr4:011009753	0.0	W/11009753-11010280,11010410-11010634,11010895-11011056,11011205-11011573,11011764-11012580,11012672-11012775,11012879-11013076,11013298-11013588	AT4G20400.2  CDS  gene_syn F9F13.50, F9F13_50  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein  note transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), FY-rich, C-terminal (InterPro:IPR003889), FY-rich, N-terminal (InterPro:IPR003888), Transcription factor jumonji, JmjN (InterPro:IPR003349), Zinc finger, C5HC2-type (InterPro:IPR004198), FY-rich, C-terminal subgroup (InterPro:IPR018516), Transcription factor jumonji (InterPro:IPR013129), FY-rich, N-terminal subgroup (InterPro:IPR018518); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT1G30810.1); Has 1510 Blast hits to 1138 proteins in 134 species: Archae - 0; Bacteria - 0; Metazoa - 934; Fungi - 289; Plants - 158; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).  protein_id AT4G20400.2p  transcript_id AT4G20400.2  protein_id AT4G20400.2p  transcript_id AT4G20400.2  
At4g20410	chr4:011016411	0.0	C/11016411-11016454,11015781-11015848,11015575-11015659,11015319-11015477,11015039-11015176,11014816-11014894,11014603-11014682,11014354-11014483,11014099-11014191	AT4G20410.1  CDS  gene_syn F9F13.60, F9F13_60, GAMMA-SNAP, GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN, GSNAP  gene GSNAP  function Encodes a member of the gamma-soluble NSF attachment protein (gSNAP) gene family.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process intracellular protein transport|GO:0006886||IEA  go_function binding|GO:0005488||IEA  go_component endoplasmic reticulum|GO:0005783||ISS  go_component Golgi apparatus|GO:0005794||ISS  go_process intracellular protein transport|GO:0006886||ISS  go_function transporter activity|GO:0005215||ISS  product GSNAP (GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN); binding / transporter  note GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN (GSNAP); FUNCTIONS IN: transporter activity, binding; INVOLVED IN: intracellular protein transport; LOCATED IN: endoplasmic reticulum, Golgi apparatus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NSF attachment protein (InterPro:IPR000744), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2); binding / soluble NSF attachment protein (TAIR:AT3G56190.1); Has 402 Blast hits to 395 proteins in 119 species: Archae - 5; Bacteria - 3; Metazoa - 196; Fungi - 58; Plants - 92; Viruses - 2; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT4G20410.1p  transcript_id AT4G20410.1  protein_id AT4G20410.1p  transcript_id AT4G20410.1  
At4g20420	chr4:011017041	0.0	W/11017041-11017469	AT4G20420.1  CDS  gene_syn F9F13.70, F9F13_70  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product tapetum-specific protein-related  note tapetum-specific protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Tapetum specific TAP35TAP44 (InterPro:IPR009891); BEST Arabidopsis thaliana protein match is: tapetum-specific protein-related (TAIR:AT5G44540.1); Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G20420.1p  transcript_id AT4G20420.1  protein_id AT4G20420.1p  transcript_id AT4G20420.1  
At4g20430	chr4:011020855	0.0	C/11020855-11021105,11020478-11020637,11019996-11020396,11019817-11019912,11019657-11019729,11019285-11019567,11018877-11019211,11018520-11018790,11018164-11018445,11017656-11018074	AT4G20430.1  CDS  gene_syn F9F13.80, F9F13_80  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product subtilase family protein  note subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system, cell wall, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8A, DUF1034 C-terminal (InterPro:IPR010435), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT5G44530.1); Has 5557 Blast hits to 4710 proteins in 818 species: Archae - 153; Bacteria - 3220; Metazoa - 90; Fungi - 506; Plants - 846; Viruses - 0; Other Eukaryotes - 742 (source: NCBI BLink).  protein_id AT4G20430.1p  transcript_id AT4G20430.1  protein_id AT4G20430.1p  transcript_id AT4G20430.1  
At4g20440	chr4:011022843	0.0	C/11022843-11023616	AT4G20440.1  CDS  gene_syn F9F13.90, F9F13_90, smB, small nuclear ribonucleoprotein associated protein B  gene smB  go_component nucleus|GO:0005634||ISS  go_component nucleoplasm|GO:0005654|15133128|IDA  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_component Cajal body|GO:0015030|15133128|IDA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|15133128|TAS  product smB (small nuclear ribonucleoprotein associated protein B)  note small nuclear ribonucleoprotein associated protein B (smB); INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nucleoplasm, small nucleolar ribonucleoprotein complex, nucleus, Cajal body; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Small ribonucleoprotein associated, SmB/SmN (InterPro:IPR017131), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative (TAIR:AT5G44500.2); Has 59641 Blast hits to 27303 proteins in 1040 species: Archae - 59; Bacteria - 6325; Metazoa - 32922; Fungi - 6111; Plants - 7180; Viruses - 1300; Other Eukaryotes - 5744 (source: NCBI BLink).  protein_id AT4G20440.1p  transcript_id AT4G20440.1  protein_id AT4G20440.1p  transcript_id AT4G20440.1  
At4g20440	chr4:011022843	0.0	C/11022843-11023616	AT4G20440.2  CDS  gene_syn F9F13.90, F9F13_90, smB, small nuclear ribonucleoprotein associated protein B  gene smB  go_component nucleus|GO:0005634||ISS  go_component nucleoplasm|GO:0005654|15133128|IDA  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_component Cajal body|GO:0015030|15133128|IDA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|15133128|TAS  product smB (small nuclear ribonucleoprotein associated protein B)  note small nuclear ribonucleoprotein associated protein B (smB); INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nucleoplasm, small nucleolar ribonucleoprotein complex, nucleus, Cajal body; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Small ribonucleoprotein associated, SmB/SmN (InterPro:IPR017131), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative (TAIR:AT5G44500.2); Has 59641 Blast hits to 27303 proteins in 1040 species: Archae - 59; Bacteria - 6325; Metazoa - 32922; Fungi - 6111; Plants - 7180; Viruses - 1300; Other Eukaryotes - 5744 (source: NCBI BLink).  protein_id AT4G20440.2p  transcript_id AT4G20440.2  protein_id AT4G20440.2p  transcript_id AT4G20440.2  
At4g20440	chr4:011022843	0.0	C/11022843-11023616	AT4G20440.3  CDS  gene_syn F9F13.90, F9F13_90, smB, small nuclear ribonucleoprotein associated protein B  gene smB  go_component nucleus|GO:0005634||ISS  go_component nucleoplasm|GO:0005654|15133128|IDA  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_component Cajal body|GO:0015030|15133128|IDA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|15133128|TAS  product smB (small nuclear ribonucleoprotein associated protein B)  note small nuclear ribonucleoprotein associated protein B (smB); INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nucleoplasm, small nucleolar ribonucleoprotein complex, nucleus, Cajal body; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Small ribonucleoprotein associated, SmB/SmN (InterPro:IPR017131), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative (TAIR:AT5G44500.2); Has 59641 Blast hits to 27303 proteins in 1040 species: Archae - 59; Bacteria - 6325; Metazoa - 32922; Fungi - 6111; Plants - 7180; Viruses - 1300; Other Eukaryotes - 5744 (source: NCBI BLink).  protein_id AT4G20440.3p  transcript_id AT4G20440.3  protein_id AT4G20440.3p  transcript_id AT4G20440.3  
At4g20440	chr4:011022843	0.0	C/11022843-11023616	AT4G20440.4  CDS  gene_syn F9F13.90, F9F13_90, smB, small nuclear ribonucleoprotein associated protein B  gene smB  go_component nucleus|GO:0005634||ISS  go_component nucleoplasm|GO:0005654|15133128|IDA  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_component Cajal body|GO:0015030|15133128|IDA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|15133128|TAS  product smB (small nuclear ribonucleoprotein associated protein B)  note small nuclear ribonucleoprotein associated protein B (smB); INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nucleoplasm, small nucleolar ribonucleoprotein complex, nucleus, Cajal body; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Small ribonucleoprotein associated, SmB/SmN (InterPro:IPR017131), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative (TAIR:AT5G44500.2).  protein_id AT4G20440.4p  transcript_id AT4G20440.4  protein_id AT4G20440.4p  transcript_id AT4G20440.4  
At4g20450	chr4:011028924	0.0	C/11028924-11029008,11028144-11028729,11026412-11026899,11026168-11026312,11026000-11026071,11025827-11025898,11025484-11025740,11025211-11025410,11024990-11025116,11024843-11024908,11024549-11024738,11024054-11024462	AT4G20450.1  CDS  gene_syn F9F13.100, F9F13_100  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat protein kinase, putative  note leucine-rich repeat protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, 4 leaf senescence stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / protein kinase family protein (TAIR:AT2G29000.1); Has 107741 Blast hits to 87327 proteins in 3232 species: Archae - 36; Bacteria - 7581; Metazoa - 37945; Fungi - 6615; Plants - 40125; Viruses - 362; Other Eukaryotes - 15077 (source: NCBI BLink).  protein_id AT4G20450.1p  transcript_id AT4G20450.1  protein_id AT4G20450.1p  transcript_id AT4G20450.1  
At4g20460	chr4:011031486	0.0	C/11031486-11031572,11031240-11031353,11031033-11031140,11030859-11030950,11030624-11030765,11030446-11030540,11030225-11030354,11029767-11030138	AT4G20460.1  CDS  gene_syn F9F13.110, F9F13_110  go_component endomembrane system|GO:0012505||IEA  go_process galactose metabolic process|GO:0006012||IEA  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_function catalytic activity|GO:0003824||IEA  go_function UDP-glucose 4-epimerase activity|GO:0003978||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  go_process nucleotide-sugar metabolic process|GO:0009225||ISS  go_function catalytic activity|GO:0003824||ISS  product NAD-dependent epimerase/dehydratase family protein  note NAD-dependent epimerase/dehydratase family protein; FUNCTIONS IN: coenzyme binding, UDP-glucose 4-epimerase activity, binding, catalytic activity; INVOLVED IN: galactose metabolic process, cellular metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886); BEST Arabidopsis thaliana protein match is: DUR (DEFECTIVE UGE IN ROOT); UDP-glucose 4-epimerase/ binding / catalytic/ coenzyme binding (TAIR:AT5G44480.1); Has 30641 Blast hits to 30636 proteins in 1699 species: Archae - 457; Bacteria - 14505; Metazoa - 604; Fungi - 415; Plants - 695; Viruses - 26; Other Eukaryotes - 13939 (source: NCBI BLink).  protein_id AT4G20460.1p  transcript_id AT4G20460.1  protein_id AT4G20460.1p  transcript_id AT4G20460.1  
At4g20460	chr4:011031708	0.0	C/11031708-11031765,11031486-11031610,11031240-11031353,11031033-11031140,11030859-11030950,11030624-11030765,11030446-11030540,11030225-11030354,11029767-11030138	AT4G20460.2  CDS  gene_syn F9F13.110, F9F13_110  go_process galactose metabolic process|GO:0006012||IEA  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_function catalytic activity|GO:0003824||IEA  go_function UDP-glucose 4-epimerase activity|GO:0003978||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  go_process nucleotide-sugar metabolic process|GO:0009225||ISS  go_function catalytic activity|GO:0003824||ISS  product NAD-dependent epimerase/dehydratase family protein  note NAD-dependent epimerase/dehydratase family protein; FUNCTIONS IN: coenzyme binding, UDP-glucose 4-epimerase activity, binding, catalytic activity; INVOLVED IN: galactose metabolic process, cellular metabolic process, metabolic process, nucleotide-sugar metabolic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886); BEST Arabidopsis thaliana protein match is: MUR4 (MURUS 4); UDP-arabinose 4-epimerase/ catalytic (TAIR:AT1G30620.2).  protein_id AT4G20460.2p  transcript_id AT4G20460.2  protein_id AT4G20460.2p  transcript_id AT4G20460.2  
At4g20470	chr4:011032332	0.0	C/11032332-11032754	AT4G20470.1  CDS  gene_syn F9F13.120, F9F13_120  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G20470.1p  transcript_id AT4G20470.1  protein_id AT4G20470.1p  transcript_id AT4G20470.1  
At4g20480	chr4:011035268	0.0	C/11035268-11035526,11034969-11035193,11034740-11034896,11034465-11034609	AT4G20480.1  CDS  gene_syn F9F13.130, F9F13_130  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06810.1); Has 76 Blast hits to 74 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G20480.1p  transcript_id AT4G20480.1  protein_id AT4G20480.1p  transcript_id AT4G20480.1  
At4g20490	chr4:011036683	0.0	W/11036683-11039991	AT4G20490.1  mRNA_TE_gene  pseudo  gene_syn F9F13.140, F9F13_140  note Transposable element gene, gypsy-like retrotransposon family, has a 1.5e-29 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays)  
At4g20500	chr4:011040459	0.0	C/11040459-11041007	AT4G20500.1  mRNA_TE_gene  pseudo  gene_syn F9F13.150, F9F13_150  note Transposable element gene, similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT4G20730.1)  
At4g20510	chr4:011041657	0.0	W/11041657-11044799	AT4G20510.1  mRNA_TE_gene  pseudo  gene_syn F9F13.160, F9F13_160  note Transposable element gene, similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT4G20730.1)  
At4g20520	chr4:011045912	0.0	W/11045912-11046154,11046686-11046946,11047019-11047390,11047462-11047716	AT4G20520.1  CDS  gene_syn F9F13.170, F9F13_170  go_process RNA-dependent DNA replication|GO:0006278||IEA  go_function RNA binding|GO:0003723||IEA  go_function RNA-directed DNA polymerase activity|GO:0003964||IEA  go_component cellular_component|GO:0005575||ND  product RNA binding / RNA-directed DNA polymerase  note RNA binding / RNA-directed DNA polymerase; FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity; INVOLVED IN: RNA-dependent DNA replication; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase) (InterPro:IPR000477), Protein of unknown function DUF1204 (InterPro:IPR009596), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G20700.1); Has 1015 Blast hits to 1006 proteins in 90 species: Archae - 0; Bacteria - 56; Metazoa - 101; Fungi - 4; Plants - 834; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT4G20520.1p  transcript_id AT4G20520.1  protein_id AT4G20520.1p  transcript_id AT4G20520.1  
At4g20530	chr4:011048627	0.0	W/11048627-11048953,11049196-11049487,11049533-11049608,11050193-11050649,11050721-11050975	AT4G20530.1  CDS  gene_syn F9F13.180, F9F13_180  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product receptor-like protein kinase-related  note receptor-like protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902), Protein of unknown function DUF1204 (InterPro:IPR009596); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase-related (TAIR:AT4G20640.1); Has 842 Blast hits to 828 proteins in 29 species: Archae - 0; Bacteria - 8; Metazoa - 19; Fungi - 0; Plants - 809; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G20530.1p  transcript_id AT4G20530.1  protein_id AT4G20530.1p  transcript_id AT4G20530.1  
At4g20540	chr4:011051886	0.0	W/11051886-11052212,11052455-11052746,11052792-11052867,11053452-11053908,11053980-11054234	AT4G20540.1  CDS  gene_syn F9F13.190  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product receptor-like protein kinase-related  note receptor-like protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902), Protein of unknown function DUF1204 (InterPro:IPR009596); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase-related (TAIR:AT4G20640.1); Has 842 Blast hits to 828 proteins in 29 species: Archae - 0; Bacteria - 8; Metazoa - 19; Fungi - 0; Plants - 809; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G20540.1p  transcript_id AT4G20540.1  protein_id AT4G20540.1p  transcript_id AT4G20540.1  
At4g20550	chr4:011055145	0.0	W/11055145-11055471,11055714-11056005,11056051-11056126,11056711-11057167,11057239-11057493	AT4G20550.1  CDS  gene_syn F9F13.200  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product receptor-like protein kinase-related  note receptor-like protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902), Protein of unknown function DUF1204 (InterPro:IPR009596); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase-related (TAIR:AT4G20640.1); Has 842 Blast hits to 828 proteins in 29 species: Archae - 0; Bacteria - 8; Metazoa - 19; Fungi - 0; Plants - 809; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G20550.1p  transcript_id AT4G20550.1  protein_id AT4G20550.1p  transcript_id AT4G20550.1  
At4g20560	chr4:011058404	0.0	W/11058404-11058730,11058973-11059264,11059310-11059385,11059970-11060426,11060498-11060752	AT4G20560.1  CDS  gene_syn F9F13.210  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product receptor-like protein kinase-related  note receptor-like protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902), Protein of unknown function DUF1204 (InterPro:IPR009596); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase-related (TAIR:AT4G20640.1); Has 842 Blast hits to 828 proteins in 29 species: Archae - 0; Bacteria - 8; Metazoa - 19; Fungi - 0; Plants - 809; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G20560.1p  transcript_id AT4G20560.1  protein_id AT4G20560.1p  transcript_id AT4G20560.1  
At4g20570	chr4:011061663	0.0	W/11061663-11061989,11062232-11062523,11062569-11062644,11063229-11063685,11063757-11064011	AT4G20570.1  CDS  gene_syn F9F13.220  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product receptor-like protein kinase-related  note receptor-like protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902), Protein of unknown function DUF1204 (InterPro:IPR009596); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase-related (TAIR:AT4G20640.1); Has 842 Blast hits to 828 proteins in 29 species: Archae - 0; Bacteria - 8; Metazoa - 19; Fungi - 0; Plants - 809; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G20570.1p  transcript_id AT4G20570.1  protein_id AT4G20570.1p  transcript_id AT4G20570.1  
At4g20580	chr4:011064922	0.0	W/11064922-11065248,11065491-11065782,11065828-11065903,11066488-11066944,11067016-11067270	AT4G20580.1  CDS  gene_syn F9F13.230  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product receptor-like protein kinase-related  note receptor-like protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902), Protein of unknown function DUF1204 (InterPro:IPR009596); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase-related (TAIR:AT4G20640.1); Has 842 Blast hits to 828 proteins in 29 species: Archae - 0; Bacteria - 8; Metazoa - 19; Fungi - 0; Plants - 809; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G20580.1p  transcript_id AT4G20580.1  protein_id AT4G20580.1p  transcript_id AT4G20580.1  
At4g20590	chr4:011068181	0.0	W/11068181-11068507,11068750-11069041,11069087-11069162,11069747-11070203,11070275-11070529	AT4G20590.1  CDS  gene_syn F9F13.240  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product receptor-like protein kinase-related  note receptor-like protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902), Protein of unknown function DUF1204 (InterPro:IPR009596); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase-related (TAIR:AT4G20640.1); Has 842 Blast hits to 828 proteins in 29 species: Archae - 0; Bacteria - 8; Metazoa - 19; Fungi - 0; Plants - 809; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G20590.1p  transcript_id AT4G20590.1  protein_id AT4G20590.1p  transcript_id AT4G20590.1  
At4g20600	chr4:011071440	0.0	W/11071440-11071766,11072009-11072300,11072346-11072421,11073006-11073462,11073534-11073788	AT4G20600.1  CDS  gene_syn F9F13.250  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product receptor-like protein kinase-related  note receptor-like protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902), Protein of unknown function DUF1204 (InterPro:IPR009596); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase-related (TAIR:AT4G20640.1); Has 842 Blast hits to 828 proteins in 29 species: Archae - 0; Bacteria - 8; Metazoa - 19; Fungi - 0; Plants - 809; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G20600.1p  transcript_id AT4G20600.1  protein_id AT4G20600.1p  transcript_id AT4G20600.1  
At4g20610	chr4:011074699	0.0	W/11074699-11075025,11075268-11075559,11075605-11075680,11076265-11076721,11076793-11077047	AT4G20610.1  CDS  gene_syn F9F13.260  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product receptor-like protein kinase-related  note receptor-like protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902), Protein of unknown function DUF1204 (InterPro:IPR009596); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase-related (TAIR:AT4G20640.1); Has 842 Blast hits to 828 proteins in 29 species: Archae - 0; Bacteria - 8; Metazoa - 19; Fungi - 0; Plants - 809; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G20610.1p  transcript_id AT4G20610.1  protein_id AT4G20610.1p  transcript_id AT4G20610.1  
At4g20620	chr4:011077958	0.0	W/11077958-11078284,11078527-11078818,11078864-11078939,11079524-11079980,11080052-11080306	AT4G20620.1  CDS  gene_syn F9F13.270  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product receptor-like protein kinase-related  note receptor-like protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902), Protein of unknown function DUF1204 (InterPro:IPR009596); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase-related (TAIR:AT4G20640.1); Has 842 Blast hits to 828 proteins in 29 species: Archae - 0; Bacteria - 8; Metazoa - 19; Fungi - 0; Plants - 809; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G20620.1p  transcript_id AT4G20620.1  protein_id AT4G20620.1p  transcript_id AT4G20620.1  
At4g20630	chr4:011082804	0.0	W/11082804-11083130,11083373-11083664,11083710-11083785,11084370-11084826,11084898-11085152	AT4G20630.1  CDS  gene_syn F9F13.280  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product receptor-like protein kinase-related  note receptor-like protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902), Protein of unknown function DUF1204 (InterPro:IPR009596); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase-related (TAIR:AT4G20640.1); Has 842 Blast hits to 828 proteins in 29 species: Archae - 0; Bacteria - 8; Metazoa - 19; Fungi - 0; Plants - 809; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G20630.1p  transcript_id AT4G20630.1  protein_id AT4G20630.1p  transcript_id AT4G20630.1  
At4g20640	chr4:011086063	0.0	W/11086063-11086389,11086632-11086923,11086969-11087044,11087629-11088085,11088157-11088411	AT4G20640.1  CDS  gene_syn F9F13.290  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product receptor-like protein kinase-related  note receptor-like protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902), Protein of unknown function DUF1204 (InterPro:IPR009596); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase-related (TAIR:AT4G20630.1); Has 842 Blast hits to 828 proteins in 29 species: Archae - 0; Bacteria - 8; Metazoa - 19; Fungi - 0; Plants - 809; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G20640.1p  transcript_id AT4G20640.1  protein_id AT4G20640.1p  transcript_id AT4G20640.1  
At4g20650	chr4:011089322	0.0	W/11089322-11089648,11089891-11090182,11090228-11090303,11090888-11091671	AT4G20650.1  CDS  gene_syn F9F13.300, F9F13_300  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902), Protein of unknown function DUF1204 (InterPro:IPR009596); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase-related (TAIR:AT4G20640.1); Has 882 Blast hits to 868 proteins in 42 species: Archae - 2; Bacteria - 18; Metazoa - 43; Fungi - 4; Plants - 811; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G20650.1p  transcript_id AT4G20650.1  protein_id AT4G20650.1p  transcript_id AT4G20650.1  
At4g20670	chr4:011092539	0.0	W/11092539-11092907,11093148-11093621	AT4G20670.1  CDS  gene_syn F21C20.20, F21C20_20  go_component extracellular region|GO:0005576|11431566|IDA  go_process biological_process|GO:0008150||ND  go_function lipase activity|GO:0016298|11431566|ISS  product lipase  note lipase; FUNCTIONS IN: lipase activity; INVOLVED IN: biological_process unknown; LOCATED IN: extracellular region; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase-related (TAIR:AT3G21990.1); Has 944 Blast hits to 925 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 944; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G20670.1p  transcript_id AT4G20670.1  protein_id AT4G20670.1p  transcript_id AT4G20670.1  
At4g20680	chr4:011095027	0.0	W/11095027-11095368,11095828-11096307	AT4G20680.1  CDS  gene_syn F21C20.30, F21C20_30  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product receptor-like protein kinase-related  note receptor-like protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase-related (TAIR:AT3G22000.1); Has 894 Blast hits to 873 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 894; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G20680.1p  transcript_id AT4G20680.1  protein_id AT4G20680.1p  transcript_id AT4G20680.1  
At4g20690	chr4:011097827	0.0	C/11097827-11098024,11097242-11097460	AT4G20690.1  CDS  gene_syn F21C20.40, F21C20_40  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 86 Blast hits to 20 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G20690.1p  transcript_id AT4G20690.1  protein_id AT4G20690.1p  transcript_id AT4G20690.1  
At4g20700	chr4:011098270	0.0	W/11098270-11098337,11098454-11098650,11098731-11100055	AT4G20700.1  CDS  gene_syn F21C20.50, F21C20_50  product unknown protein  note CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1204 (InterPro:IPR009596); BEST Arabidopsis thaliana protein match is: RNA binding / RNA-directed DNA polymerase (TAIR:AT4G20520.1); Has 123 Blast hits to 123 proteins in 28 species: Archae - 2; Bacteria - 16; Metazoa - 37; Fungi - 4; Plants - 62; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G20700.1p  transcript_id AT4G20700.1  protein_id AT4G20700.1p  transcript_id AT4G20700.1  
At4g20710	chr4:011100924	0.0	W/11100924-11101989	AT4G20710.1  pseudogenic_transcript  pseudo  gene_syn F21C20.60, F21C20_60  function Pseudogene of AT4G20710; DUF-26 IntrePro domain family protein  note similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G20650.1); similar to unknown protein [Arabidopsis lyrata] (GB:AAN46206.1); contains InterPro domain Protein of unknown function DUF26 (InterPro:IPR002902); contains InterPro domain Protein of unknown function DUF1204 (InterPro:IPR009596)  
At4g20715	chr4:011103377	0.0	C/11103377-11104170	AT4G20715.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT4G20730.1)  
At4g20720	chr4:011105409	0.0	W/11105409-11105735,11105856-11107543,11107667-11107841	AT4G20720.1  CDS  gene_syn F21C20.70, F21C20_70  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product dentin sialophosphoprotein-related  note dentin sialophosphoprotein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT1G05090.1); Has 3403 Blast hits to 1139 proteins in 183 species: Archae - 4; Bacteria - 2474; Metazoa - 376; Fungi - 145; Plants - 79; Viruses - 1; Other Eukaryotes - 324 (source: NCBI BLink).  protein_id AT4G20720.1p  transcript_id AT4G20720.1  protein_id AT4G20720.1p  transcript_id AT4G20720.1  
At4g20725	chr4:011111763	0.0	C/11111763-11114366	AT4G20725.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.2e-31 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At4g20730	chr4:011117798	0.0	C/11117798-11120595	AT4G20730.1  mRNA_TE_gene  pseudo  gene_syn F21C20.80, F21C20_80  note Transposable element gene, similar to ASY2, DNA binding [Arabidopsis thaliana] (TAIR:AT4G32200.1); similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT3G10100.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G09910.1); similar to hypothetical protein 27.t00126 [Brassica oleracea] (GB:ABD65062.1); contains domain (Phosphotyrosine protein) phosphatases II (SSF52799)  
At4g20740	chr4:011126151	0.0	W/11126151-11128334	AT4G20740.1  CDS  gene_syn F21C20.90, F21C20_90  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G59900.1); Has 16163 Blast hits to 5078 proteins in 161 species: Archae - 6; Bacteria - 2; Metazoa - 239; Fungi - 282; Plants - 14976; Viruses - 0; Other Eukaryotes - 658 (source: NCBI BLink).  protein_id AT4G20740.1p  transcript_id AT4G20740.1  protein_id AT4G20740.1p  transcript_id AT4G20740.1  
At4g20760	chr4:011129043	0.0	W/11129043-11129219,11129341-11129493,11129588-11129681,11129827-11129909,11130054-11130207,11130306-11130541	AT4G20760.1  CDS  gene_syn AT4G20750, F21C20.110, F21C20_110  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process metabolic process|GO:0008152||ISS  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT5G51030.1); Has 32599 Blast hits to 32561 proteins in 1731 species: Archae - 225; Bacteria - 18715; Metazoa - 2741; Fungi - 1958; Plants - 1024; Viruses - 1; Other Eukaryotes - 7935 (source: NCBI BLink).  protein_id AT4G20760.1p  transcript_id AT4G20760.1  protein_id AT4G20760.1p  transcript_id AT4G20760.1  
At4g20770	chr4:011130762	0.0	C/11130762-11132984	AT4G20770.1  CDS  gene_syn F21C20.120, F21C20_120  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G02330.1); Has 19914 Blast hits to 4972 proteins in 138 species: Archae - 0; Bacteria - 2; Metazoa - 141; Fungi - 107; Plants - 19318; Viruses - 0; Other Eukaryotes - 346 (source: NCBI BLink).  protein_id AT4G20770.1p  transcript_id AT4G20770.1  protein_id AT4G20770.1p  transcript_id AT4G20770.1  
At4g20780	chr4:011133309	0.0	C/11133309-11133884	AT4G20780.1  CDS  gene_syn F21C20.130, F21C20_130  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding protein, putative  note calcium-binding protein, putative; FUNCTIONS IN: calcium ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding protein, putative (TAIR:AT5G44460.1); Has 12187 Blast hits to 8815 proteins in 1091 species: Archae - 0; Bacteria - 23; Metazoa - 5095; Fungi - 2584; Plants - 2687; Viruses - 2; Other Eukaryotes - 1796 (source: NCBI BLink).  protein_id AT4G20780.1p  transcript_id AT4G20780.1  protein_id AT4G20780.1p  transcript_id AT4G20780.1  
At4g20790	chr4:011135166	0.0	C/11135166-11136423,11134775-11135073	AT4G20790.1  CDS  gene_syn F21C20.140, F21C20_140  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT2G24130.1); Has 13067 Blast hits to 12231 proteins in 270 species: Archae - 0; Bacteria - 6; Metazoa - 632; Fungi - 1; Plants - 12227; Viruses - 21; Other Eukaryotes - 180 (source: NCBI BLink).  protein_id AT4G20790.1p  transcript_id AT4G20790.1  protein_id AT4G20790.1p  transcript_id AT4G20790.1  
At4g20800	chr4:011139656	0.0	W/11139656-11141242	AT4G20800.1  CDS  gene_syn F21C20.150, F21C20_150  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: embryo; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT1G26390.1); Has 2561 Blast hits to 2425 proteins in 395 species: Archae - 12; Bacteria - 1020; Metazoa - 12; Fungi - 1094; Plants - 335; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT4G20800.1p  transcript_id AT4G20800.1  protein_id AT4G20800.1p  transcript_id AT4G20800.1  
At4g20810	chr4:011143476	0.0	C/11143476-11143597,11143204-11143324,11143048-11143131,11142843-11142952,11142367-11142703,11142064-11142267,11141790-11141976,11141427-11141512	AT4G20810.1  CDS  gene_syn F21C20.160, F21C20_160  go_component transcription factor TFIIE complex|GO:0005673||IEA  go_process transcription initiation from RNA polymerase II promoter|GO:0006367||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  go_component transcription factor TFIIE complex|GO:0005673||ISS  go_function transcription initiation factor activity|GO:0016986||ISS  product transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein  note transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein; FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: transcription factor TFIIE complex; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIE, alpha subunit (InterPro:IPR002853), Transcription factor TFE/TFIIEalpha, HTH domain (InterPro:IPR017919); BEST Arabidopsis thaliana protein match is: RNA polymerase II transcription factor/ transcription initiation factor (TAIR:AT4G20340.1); Has 375 Blast hits to 365 proteins in 109 species: Archae - 3; Bacteria - 10; Metazoa - 150; Fungi - 92; Plants - 57; Viruses - 9; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT4G20810.1p  transcript_id AT4G20810.1  protein_id AT4G20810.1p  transcript_id AT4G20810.1  
At4g20820	chr4:011150160	0.0	W/11150160-11151758	AT4G20820.1  CDS  gene_syn F21C20.170, F21C20_170  go_function catalytic activity|GO:0003824||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function electron carrier activity|GO:0009055||ISS  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Oxygen oxidoreductase covalent FAD-binding site (InterPro:IPR006093), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT5G44440.1); Has 2842 Blast hits to 2745 proteins in 457 species: Archae - 31; Bacteria - 1093; Metazoa - 31; Fungi - 1138; Plants - 356; Viruses - 0; Other Eukaryotes - 193 (source: NCBI BLink).  protein_id AT4G20820.1p  transcript_id AT4G20820.1  protein_id AT4G20820.1p  transcript_id AT4G20820.1  
At4g20830	chr4:011155486	0.0	W/11155486-11157097,11157477-11157577	AT4G20830.1  CDS  gene_syn F21C20.180, F21C20_180  go_component mitochondrion|GO:0005739|15276431|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process response to oxidative stress|GO:0006979|15634198|IEP  go_function electron carrier activity|GO:0009055||ISS  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; INVOLVED IN: response to oxidative stress; LOCATED IN: mitochondrion, apoplast, plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT4G20840.1); Has 2579 Blast hits to 2500 proteins in 422 species: Archae - 14; Bacteria - 994; Metazoa - 2; Fungi - 1070; Plants - 381; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).  protein_id AT4G20830.1p  transcript_id AT4G20830.1  protein_id AT4G20830.1p  transcript_id AT4G20830.1  
At4g20830	chr4:011155486	0.0	W/11155486-11157108	AT4G20830.2  CDS  gene_syn F21C20.180, F21C20_180  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process response to oxidative stress|GO:0006979|15634198|IEP  go_function electron carrier activity|GO:0009055||ISS  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; INVOLVED IN: response to oxidative stress; LOCATED IN: apoplast, plasma membrane, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT4G20840.1); Has 2578 Blast hits to 2497 proteins in 421 species: Archae - 14; Bacteria - 996; Metazoa - 2; Fungi - 1067; Plants - 381; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).  protein_id AT4G20830.2p  transcript_id AT4G20830.2  protein_id AT4G20830.2p  transcript_id AT4G20830.2  
At4g20840	chr4:011157916	0.0	W/11157916-11159535	AT4G20840.1  CDS  gene_syn F21C20.190, F21C20_190  go_component plasma membrane|GO:0005886|17317660|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function electron carrier activity|GO:0009055||ISS  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: apoplast, plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT4G20830.2); Has 2748 Blast hits to 2654 proteins in 455 species: Archae - 10; Bacteria - 1082; Metazoa - 3; Fungi - 1106; Plants - 397; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).  protein_id AT4G20840.1p  transcript_id AT4G20840.1  protein_id AT4G20840.1p  transcript_id AT4G20840.1  
At4g20850	chr4:011169457	0.0	C/11169457-11169889,11169176-11169254,11169021-11169094,11168817-11168926,11168610-11168690,11168420-11168506,11168182-11168324,11167910-11168060,11167708-11167830,11167390-11167473,11167101-11167288,11166847-11167021,11166624-11166745,11166471-11166550,11166217-11166275,11165797-11165951,11165527-11165705,11165308-11165420,11165070-11165240,11164458-11164586,11164271-11164371,11164063-11164180,11163742-11163821,11163467-11163533,11163224-11163306,11163078-11163129,11162864-11162995,11162613-11162684,11162368-11162460,11162142-11162237,11161746-11161844,11161542-11161634,11161188-11161349,11160935-11161093	AT4G20850.1  CDS  gene_syn T13K14.10, T13K14_10, TPP2, TRIPEPTIDYL PEPTIDASE II  gene TPP2  function Tripeptidyl Peptidase II. Ser protease that assembles into a large oligomeric complex containing two proteins of 153 and 142 kD that are derived from a single TPP2 gene, with the smaller version missing part of the C-terminal end. Not essential, based on the lack of phenotype of a T-DNA disruption mutant.  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component cytoplasm|GO:0005737|15908606|IDA  go_process proteolysis|GO:0006508|15908606|IDA  go_function tripeptidyl-peptidase activity|GO:0008240|15908606|IDA  product TPP2 (TRIPEPTIDYL PEPTIDASE II); tripeptidyl-peptidase  note TRIPEPTIDYL PEPTIDASE II (TPP2); FUNCTIONS IN: tripeptidyl-peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500); Has 4073 Blast hits to 3946 proteins in 797 species: Archae - 133; Bacteria - 2462; Metazoa - 586; Fungi - 170; Plants - 63; Viruses - 0; Other Eukaryotes - 659 (source: NCBI BLink).  protein_id AT4G20850.1p  transcript_id AT4G20850.1  protein_id AT4G20850.1p  transcript_id AT4G20850.1  
At4g20860	chr4:011172726	0.0	W/11172726-11174318	AT4G20860.1  CDS  gene_syn T13K14.20, T13K14_20  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function electron carrier activity|GO:0009055||ISS  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; INVOLVED IN: response to cyclopentenone; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, LP.10 ten leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Oxygen oxidoreductase covalent FAD-binding site (InterPro:IPR006093), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT5G44360.1); Has 3032 Blast hits to 2927 proteins in 504 species: Archae - 28; Bacteria - 1241; Metazoa - 4; Fungi - 1147; Plants - 342; Viruses - 0; Other Eukaryotes - 270 (source: NCBI BLink).  protein_id AT4G20860.1p  transcript_id AT4G20860.1  protein_id AT4G20860.1p  transcript_id AT4G20860.1  
At4g20870	chr4:011175828	0.0	C/11175828-11175878,11175562-11175654,11175274-11175470,11175078-11175183,11174833-11174979,11174620-11174739	AT4G20870.1  CDS  gene_syn ARABIDOPSIS FATTY ACID HYDROXYLASE 2, ATFAH2, FAH2, FATTY ACID HYDROXYLASE 2, T13K14.30, T13K14_30  gene FAH2  function encodes a fatty acid hydroxylase, required for the AtBI-1-mediated suppression of programmed cell death.  go_component endoplasmic reticulum|GO:0005783|19054355|IDA  go_process negative regulation of programmed cell death|GO:0043069|19054355|IGI  go_function catalytic activity|GO:0003824||ISS  go_function fatty acid alpha-hydroxylase activity|GO:0080132|19054355|IGI  product FAH2 (FATTY ACID HYDROXYLASE 2); catalytic/ fatty acid alpha-hydroxylase  note FATTY ACID HYDROXYLASE 2 (FAH2); FUNCTIONS IN: fatty acid alpha-hydroxylase activity, catalytic activity; INVOLVED IN: negative regulation of programmed cell death; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: FAH1 (FATTY ACID HYDROXYLASE 1); catalytic/ fatty acid alpha-hydroxylase (TAIR:AT2G34770.1); Has 499 Blast hits to 498 proteins in 218 species: Archae - 0; Bacteria - 205; Metazoa - 94; Fungi - 92; Plants - 45; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT4G20870.1p  transcript_id AT4G20870.1  protein_id AT4G20870.1p  transcript_id AT4G20870.1  
At4g20880	chr4:011179389	0.0	C/11179389-11180606	AT4G20880.1  CDS  gene_syn T13K14.40, T13K14_40  go_component nucleus|GO:0005634|11094976|TAS  product ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2)  note ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2); LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: ethylene-responsive nuclear protein -related (TAIR:AT5G44350.1); Has 2338 Blast hits to 1466 proteins in 159 species: Archae - 2; Bacteria - 88; Metazoa - 803; Fungi - 110; Plants - 59; Viruses - 12; Other Eukaryotes - 1264 (source: NCBI BLink).  protein_id AT4G20880.1p  transcript_id AT4G20880.1  protein_id AT4G20880.1p  transcript_id AT4G20880.1  
At4g20890	chr4:011182218	0.0	W/11182218-11182611,11182795-11183064,11183170-11183840	AT4G20890.1  CDS  gene_syn T13K14.50, T13K14_50, TUB9  gene TUB9  function tubulin 9  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function GTPase activity|GO:0003924||IEA  go_function structural molecule activity|GO:0005198||IEA  go_function GTP binding|GO:0005525||IEA  go_component tubulin complex|GO:0045298|1498609|ISS  go_function structural molecule activity|GO:0005198||ISS  product TUB9; GTP binding / GTPase/ structural molecule  note TUB9; FUNCTIONS IN: structural molecule activity, GTP binding, GTPase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: tubulin complex, chloroplast, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase (InterPro:IPR003008), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: TUB4; structural constituent of cytoskeleton (TAIR:AT5G44340.1); Has 17208 Blast hits to 17154 proteins in 3652 species: Archae - 34; Bacteria - 33; Metazoa - 3617; Fungi - 9660; Plants - 1012; Viruses - 0; Other Eukaryotes - 2852 (source: NCBI BLink).  protein_id AT4G20890.1p  transcript_id AT4G20890.1  protein_id AT4G20890.1p  transcript_id AT4G20890.1  
At4g20900	chr4:011185632	0.0	C/11185632-11185844,11185235-11185447,11185004-11185152,11184799-11184915,11184103-11184763	AT4G20900.1  CDS  gene_syn MALE-STERILE 5, MS5, T13K14.60, T13K14_60, TDM1  gene MS5  function ms5 mutants are male sterile, pollen tetrads undergo an extra round of division after meiosis II without chromosome replication, resulting in chromosome abnormalities. Gene product has some similarity to SCP1, a rat synaptonemal complex protein.  go_component nucleus|GO:0005634|9750346|ISS  go_process microsporogenesis|GO:0009556|9750346|IMP  product MS5 (MALE-STERILE 5)  note MALE-STERILE 5 (MS5); INVOLVED IN: microsporogenesis; LOCATED IN: nucleus; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: male sterility MS5 family protein (TAIR:AT5G44330.1); Has 109 Blast hits to 109 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 99; Viruses - 4; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G20900.1p  transcript_id AT4G20900.1  protein_id AT4G20900.1p  transcript_id AT4G20900.1  
At4g20910	chr4:011190324	0.0	C/11190324-11190575,11190144-11190233,11189539-11189990,11189200-11189454,11188038-11188987,11187385-11187536,11187124-11187240,11186810-11186929,11186264-11186704	AT4G20910.1  CDS  gene_syn CORYMBOSA 2, CRM2, HEN1, HUA ENHANCER 1, T13K14.70, T13K14_70  gene HEN1  function Encodes an enhancer of hua1 and hua2 tha acts to specify reproductive organ identities and to repress A gene function. HEN1 also shares AG s non-homeotic function in controlling floral determinacy. Mutants display corymb-like inflorescences. HEN1 is a methyltransferase that methylates miRNAs and siRNAs on the ribose of the last nucleotide. The 3 -end methylation probably protects the 3  ends of the small RNAs from uridylation.  go_component nucleus|GO:0005634|17442570|IDA  go_component cytoplasm|GO:0005737|17442570|IDA  go_process virus induced gene silencing|GO:0009616|17090584|IMP  go_process regulation of flower development|GO:0009909|11917084|IMP  go_process specification of floral organ identity|GO:0010093|11874905|IMP  go_process RNA interference, production of siRNA|GO:0030422|17558406|IMP  go_process gene silencing by miRNA, production of miRNAs|GO:0035196|12747833|IMP  go_process gene silencing by miRNA, production of miRNAs|GO:0035196||NAS  go_process gene silencing by miRNA, mRNA cleavage|GO:0035279|15851028|IMP  go_function RNA methyltransferase activity|GO:0008173|15705854|IDA  go_function RNA methyltransferase activity|GO:0008173|16111943|IMP  product HEN1 (HUA ENHANCER 1); RNA methyltransferase  note HUA ENHANCER 1 (HEN1); FUNCTIONS IN: RNA methyltransferase activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding protein Lupus La (InterPro:IPR006630), Double-stranded RNA binding (InterPro:IPR001159), Methyltransferase type 12 (InterPro:IPR013217); BEST Arabidopsis thaliana protein match is: double-stranded RNA binding (TAIR:AT4G20920.1); Has 298 Blast hits to 298 proteins in 126 species: Archae - 4; Bacteria - 119; Metazoa - 102; Fungi - 17; Plants - 18; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT4G20910.1p  transcript_id AT4G20910.1  protein_id AT4G20910.1p  transcript_id AT4G20910.1  
At4g20920	chr4:011197362	0.0	C/11197362-11197577,11197172-11197270,11196626-11197080,11196332-11196544,11195252-11196171,11194690-11194841,11194464-11194580,11194177-11194236	AT4G20920.1  CDS  gene_syn T13K14.80, T13K14_80  go_component intracellular|GO:0005622||IEA  go_function double-stranded RNA binding|GO:0003725||IEA  go_function double-stranded RNA binding|GO:0003725||ISS  product double-stranded RNA binding  note double-stranded RNA binding; FUNCTIONS IN: double-stranded RNA binding; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: RNA-binding protein Lupus La (InterPro:IPR006630), Double-stranded RNA binding (InterPro:IPR001159); BEST Arabidopsis thaliana protein match is: HEN1 (HUA ENHANCER 1); RNA methyltransferase (TAIR:AT4G20910.1); Has 217 Blast hits to 217 proteins in 93 species: Archae - 0; Bacteria - 70; Metazoa - 102; Fungi - 15; Plants - 23; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT4G20920.1p  transcript_id AT4G20920.1  protein_id AT4G20920.1p  transcript_id AT4G20920.1  
At4g20930	chr4:011200923	0.0	C/11200923-11201036,11200523-11200611,11200302-11200416,11199965-11200115,11199753-11199835,11199526-11199621,11199252-11199394,11199065-11199149,11198878-11198957,11198627-11198714	AT4G20930.1  CDS  gene_syn T13K14.90, T13K14_90  go_process pentose-phosphate shunt|GO:0006098||IEA  go_process valine metabolic process|GO:0006573||IEA  go_process valine catabolic process|GO:0006574||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function phosphogluconate dehydrogenase (decarboxylating) activity|GO:0004616||IEA  go_function binding|GO:0005488||IEA  go_function 3-hydroxyisobutyrate dehydrogenase activity|GO:0008442||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function coenzyme binding|GO:0050662||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_function phosphogluconate dehydrogenase (decarboxylating) activity|GO:0004616||ISS  product 3-hydroxyisobutyrate dehydrogenase, putative  note 3-hydroxyisobutyrate dehydrogenase, putative; FUNCTIONS IN: in 7 functions; INVOLVED IN: pentose-phosphate shunt, valine metabolic process, valine catabolic process, metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), 3-hydroxyacid dehydrogenase/reductase (InterPro:IPR015815), 3-hydroxyisobutyrate dehydrogenase (InterPro:IPR011548), NAD(P)-binding (InterPro:IPR016040), 3-hydroxyisobutyrate dehydrogenase-related, conserved site (InterPro:IPR002204); BEST Arabidopsis thaliana protein match is: GLYR2 (GLYOXYLATE REDUCTASE 2); glyoxylate reductase (NADP)/ phosphogluconate dehydrogenase (decarboxylating) (TAIR:AT1G17650.1); Has 10362 Blast hits to 10344 proteins in 1053 species: Archae - 94; Bacteria - 4661; Metazoa - 269; Fungi - 232; Plants - 134; Viruses - 2; Other Eukaryotes - 4970 (source: NCBI BLink).  protein_id AT4G20930.1p  transcript_id AT4G20930.1  protein_id AT4G20930.1p  transcript_id AT4G20930.1  
At4g20940	chr4:011202728	0.0	W/11202728-11203727,11203839-11205282,11205549-11206038	AT4G20940.1  CDS  gene_syn T13K14.100, T13K14_100  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction, N-terminal protein myristoylation; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT2G27060.1); Has 81430 Blast hits to 31231 proteins in 1030 species: Archae - 46; Bacteria - 4321; Metazoa - 29495; Fungi - 1107; Plants - 40796; Viruses - 21; Other Eukaryotes - 5644 (source: NCBI BLink).  protein_id AT4G20940.1p  transcript_id AT4G20940.1  protein_id AT4G20940.1p  transcript_id AT4G20940.1  
At4g20960	chr4:011212077	0.0	W/11212077-11212445,11212542-11212840,11212918-11213530	AT4G20960.1  CDS  gene_syn T13K14.120, T13K14_120  function encodes diaminohydroxyphosphoribosylaminopyrimidine deaminase catalyzing the second step in the riboflavin biosynthesis  go_component chloroplast|GO:0009507|18431481|IDA  go_process riboflavin biosynthetic process|GO:0009231|15208317|IDA  go_function zinc ion binding|GO:0008270||ISS  go_function diaminohydroxyphosphoribosylaminopyrimidine deaminase activity|GO:0008835|15208317|IGI  go_function hydrolase activity|GO:0016787||ISS  product cytidine/deoxycytidylate deaminase family protein  note cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: hydrolase activity, zinc ion binding, diaminohydroxyphosphoribosylaminopyrimidine deaminase activity; INVOLVED IN: riboflavin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Riboflavin biosynthesis protein RibD (InterPro:IPR004794); BEST Arabidopsis thaliana protein match is: cytidine/deoxycytidylate deaminase family protein (TAIR:AT3G47390.1); Has 6497 Blast hits to 6497 proteins in 1246 species: Archae - 18; Bacteria - 3798; Metazoa - 6; Fungi - 97; Plants - 62; Viruses - 2; Other Eukaryotes - 2514 (source: NCBI BLink).  protein_id AT4G20960.1p  transcript_id AT4G20960.1  protein_id AT4G20960.1p  transcript_id AT4G20960.1  
At4g20970	chr4:011215259	0.0	W/11215259-11215390,11215490-11215855,11216138-11216212	AT4G20970.1  CDS  gene_syn T13K14.130, T13K14_130  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: transcription regulator (TAIR:AT1G10586.1); Has 90 Blast hits to 89 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G20970.1p  transcript_id AT4G20970.1  protein_id AT4G20970.1p  transcript_id AT4G20970.1  
At4g20980	chr4:011216997	0.0	W/11216997-11218772	AT4G20980.1  CDS  gene_syn T13K14.140, T13K14_140  go_component chloroplast|GO:0009507||IEA  go_process translational initiation|GO:0006413||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putative  note eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putative; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Eukaryotic translation initiation factor 3, subunit 7 (InterPro:IPR007783); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putative (TAIR:AT5G44320.1); Has 344 Blast hits to 335 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 173; Fungi - 61; Plants - 41; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT4G20980.1p  transcript_id AT4G20980.1  protein_id AT4G20980.1p  transcript_id AT4G20980.1  
At4g20980	chr4:011216997	0.0	W/11216997-11218772	AT4G20980.2  CDS  gene_syn T13K14.140, T13K14_140  go_component chloroplast|GO:0009507||IEA  go_process translational initiation|GO:0006413||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putative  note eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putative; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Eukaryotic translation initiation factor 3, subunit 7 (InterPro:IPR007783); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putative (TAIR:AT5G44320.1); Has 344 Blast hits to 335 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 173; Fungi - 61; Plants - 41; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT4G20980.2p  transcript_id AT4G20980.2  protein_id AT4G20980.2p  transcript_id AT4G20980.2  
At4g20980	chr4:011216997	0.0	W/11216997-11218772	AT4G20980.3  CDS  gene_syn T13K14.140, T13K14_140  go_component chloroplast|GO:0009507||IEA  go_process translational initiation|GO:0006413||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putative  note eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putative; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Eukaryotic translation initiation factor 3, subunit 7 (InterPro:IPR007783); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putative (TAIR:AT5G44320.1); Has 344 Blast hits to 335 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 173; Fungi - 61; Plants - 41; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT4G20980.3p  transcript_id AT4G20980.3  protein_id AT4G20980.3p  transcript_id AT4G20980.3  
At4g20990	chr4:011219772	0.0	W/11219772-11219862,11219960-11220174,11220258-11220364,11220449-11220551,11220637-11220795,11220916-11220969,11221052-11221126	AT4G20990.1  CDS  gene_syn A. THALIANA ALPHA CARBONIC ANHYDRASE 4, ACA4, ALPHA CARBONIC ANHYDRASE 4, ATACA4, T13K14.1, T13K14_1  gene ACA4  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_process one-carbon compound metabolic process|GO:0006730||IEA  go_function carbonate dehydratase activity|GO:0004089||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process one-carbon compound metabolic process|GO:0006730||ISS  go_function carbonate dehydratase activity|GO:0004089||ISS  go_function zinc ion binding|GO:0008270||ISS  product ACA4 (ALPHA CARBONIC ANHYDRASE 4); carbonate dehydratase/ zinc ion binding  note ALPHA CARBONIC ANHYDRASE 4 (ACA4); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: one-carbon compound metabolic process; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, alpha-class, catalytic domain (InterPro:IPR001148), Carbonic anhydrase, CAH1-like (InterPro:IPR018340), Carbonic anhydrase, alpha-class, conserved site (InterPro:IPR018338); BEST Arabidopsis thaliana protein match is: ACA6 (ALPHA CARBONIC ANHYDRASE 6); carbonate dehydratase/ zinc ion binding (TAIR:AT4G21000.1); Has 2448 Blast hits to 2435 proteins in 318 species: Archae - 0; Bacteria - 341; Metazoa - 1763; Fungi - 52; Plants - 157; Viruses - 3; Other Eukaryotes - 132 (source: NCBI BLink).  protein_id AT4G20990.1p  transcript_id AT4G20990.1  protein_id AT4G20990.1p  transcript_id AT4G20990.1  
At4g21000	chr4:011222529	0.0	W/11222529-11222622,11222725-11222939,11223028-11223134,11223236-11223338,11223493-11223756	AT4G21000.1  CDS  gene_syn A. THALIANA ALPHA CARBONIC ANHYDRASE 6, ACA6, ALPHA CARBONIC ANHYDRASE 6, ATACA6, T13K14.160, T13K14_160  gene ACA6  go_component endomembrane system|GO:0012505||IEA  go_process one-carbon compound metabolic process|GO:0006730||IEA  go_function carbonate dehydratase activity|GO:0004089||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process one-carbon compound metabolic process|GO:0006730||ISS  go_function carbonate dehydratase activity|GO:0004089||ISS  go_function zinc ion binding|GO:0008270||ISS  product ACA6 (ALPHA CARBONIC ANHYDRASE 6); carbonate dehydratase/ zinc ion binding  note ALPHA CARBONIC ANHYDRASE 6 (ACA6); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: one-carbon compound metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, alpha-class, catalytic domain (InterPro:IPR001148), Carbonic anhydrase, CAH1-like (InterPro:IPR018340), Carbonic anhydrase, alpha-class, conserved site (InterPro:IPR018338); BEST Arabidopsis thaliana protein match is: ACA4 (ALPHA CARBONIC ANHYDRASE 4); carbonate dehydratase/ zinc ion binding (TAIR:AT4G20990.1); Has 2353 Blast hits to 2342 proteins in 300 species: Archae - 0; Bacteria - 341; Metazoa - 1685; Fungi - 52; Plants - 158; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT4G21000.1p  transcript_id AT4G21000.1  protein_id AT4G21000.1p  transcript_id AT4G21000.1  
At4g21010	chr4:011227115	0.0	C/11227115-11227363,11226908-11227039,11226726-11226842,11226317-11226646	AT4G21010.1  CDS  gene_syn T13K14.170, T13K14_170  go_component transcription factor TFIIE complex|GO:0005673||IEA  go_process transcription initiation from RNA polymerase II promoter|GO:0006367||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  product transcription initiation factor-related  note transcription initiation factor-related; FUNCTIONS IN: RNA polymerase II transcription factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: transcription factor TFIIE complex; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIIE, beta subunit (InterPro:IPR016656), Transcription factor TFIIE beta subunit-like, DNA-binding (InterPro:IPR017935); BEST Arabidopsis thaliana protein match is: transcription initiation factor-related (TAIR:AT4G20330.1); Has 217 Blast hits to 217 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 98; Fungi - 74; Plants - 35; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT4G21010.1p  transcript_id AT4G21010.1  protein_id AT4G21010.1p  transcript_id AT4G21010.1  
At4g21020	chr4:011228263	0.0	W/11228263-11228403,11228733-11229392	AT4G21020.1  CDS  gene_syn T13K14.180, T13K14_180  go_process embryonic development ending in seed dormancy|GO:0009793||ISS  product late embryogenesis abundant domain-containing protein / LEA domain-containing protein  note late embryogenesis abundant domain-containing protein / LEA domain-containing protein; INVOLVED IN: embryonic development ending in seed dormancy; BEST Arabidopsis thaliana protein match is: late embryogenesis abundant domain-containing protein / LEA domain-containing protein (TAIR:AT5G44310.2); Has 20047 Blast hits to 9539 proteins in 1087 species: Archae - 69; Bacteria - 4524; Metazoa - 4955; Fungi - 1474; Plants - 1716; Viruses - 139; Other Eukaryotes - 7170 (source: NCBI BLink).  protein_id AT4G21020.1p  transcript_id AT4G21020.1  protein_id AT4G21020.1p  transcript_id AT4G21020.1  
At4g21030	chr4:011231414	0.0	W/11231414-11231998	AT4G21030.1  CDS  gene_syn T13K14.190, T13K14_190  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product Dof-type zinc finger domain-containing protein  note Dof-type zinc finger domain-containing protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT4G21050.1); Has 605 Blast hits to 601 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 600; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G21030.1p  transcript_id AT4G21030.1  protein_id AT4G21030.1p  transcript_id AT4G21030.1  
At4g21040	chr4:011234807	0.0	C/11234807-11235505	AT4G21040.1  CDS  gene_syn T13K14.200, T13K14_200  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product Dof-type zinc finger domain-containing protein  note Dof-type zinc finger domain-containing protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT4G21080.1); Has 612 Blast hits to 612 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 607; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G21040.1p  transcript_id AT4G21040.1  protein_id AT4G21040.1p  transcript_id AT4G21040.1  
At4g21050	chr4:011238441	0.0	W/11238441-11239073	AT4G21050.1  CDS  gene_syn T13K14.210, T13K14_210  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product Dof-type zinc finger domain-containing protein  note Dof-type zinc finger domain-containing protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT4G21040.1); Has 615 Blast hits to 611 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 610; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G21050.1p  transcript_id AT4G21050.1  protein_id AT4G21050.1p  transcript_id AT4G21050.1  
At4g21060	chr4:011240730	0.0	W/11240730-11240906,11241766-11241844,11242088-11242903,11243064-11243305,11243447-11243737,11243902-11244030,11244172-11244345,11244441-11244548,11244651-11244860	AT4G21060.1  CDS  gene_syn T13K14.220, T13K14_220  go_component membrane|GO:0016020||IEA  go_process protein amino acid glycosylation|GO:0006486||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product galactosyltransferase family protein  note galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galectin, carbohydrate recognition domain (InterPro:IPR001079), Glycosyl transferase, family 31 (InterPro:IPR002659), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320); BEST Arabidopsis thaliana protein match is: galactosyltransferase family protein (TAIR:AT5G62620.1); Has 1766 Blast hits to 1758 proteins in 92 species: Archae - 0; Bacteria - 2; Metazoa - 1428; Fungi - 6; Plants - 298; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT4G21060.1p  transcript_id AT4G21060.1  protein_id AT4G21060.1p  transcript_id AT4G21060.1  
At4g21060	chr4:011242003	0.0	W/11242003-11242903,11243064-11243305,11243447-11243737,11243902-11244030,11244172-11244345,11244441-11244548,11244651-11244860	AT4G21060.2  CDS  gene_syn T13K14.220, T13K14_220  go_component membrane|GO:0016020||IEA  go_process protein amino acid glycosylation|GO:0006486||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product galactosyltransferase family protein  note galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galectin, carbohydrate recognition domain (InterPro:IPR001079), Glycosyl transferase, family 31 (InterPro:IPR002659), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320); BEST Arabidopsis thaliana protein match is: galactosyltransferase family protein (TAIR:AT5G62620.1).  protein_id AT4G21060.2p  transcript_id AT4G21060.2  protein_id AT4G21060.2p  transcript_id AT4G21060.2  
At4g21065	chr4:011245976	0.0	W/11245976-11247763	AT4G21065.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: CRR28 (CHLORORESPIRATORY REDUCTION28); endonuclease (TAIR:AT1G59720.1); Has 14270 Blast hits to 5372 proteins in 184 species: Archae - 1; Bacteria - 4; Metazoa - 153; Fungi - 82; Plants - 13714; Viruses - 0; Other Eukaryotes - 316 (source: NCBI BLink).  protein_id AT4G21065.1p  transcript_id AT4G21065.1  protein_id AT4G21065.1p  transcript_id AT4G21065.1  
At4g21065	chr4:011246375	0.0	W/11246375-11247763	AT4G21065.2  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G33170.1); Has 16184 Blast hits to 5257 proteins in 175 species: Archae - 0; Bacteria - 4; Metazoa - 118; Fungi - 47; Plants - 15742; Viruses - 0; Other Eukaryotes - 273 (source: NCBI BLink).  protein_id AT4G21065.2p  transcript_id AT4G21065.2  protein_id AT4G21065.2p  transcript_id AT4G21065.2  
At4g21070	chr4:011248174	0.0	W/11248174-11248229,11248357-11248410,11248502-11248572,11248665-11248772,11249067-11249527,11249831-11249941,11250042-11250902,11250990-11251090,11251213-11251399,11251475-11251572,11251661-11251787,11251865-11252030,11252123-11252241,11252328-11252633	AT4G21070.1  CDS  gene_syn ATBRCA1  gene ATBRCA1  function Encodes AtBRCA1, an ortholog of the human breast cancer susceptibility gene 1. Contains one N-terminal RING finger, two C-terminal BRCT and the p300/CBP interacting domain. Strongly induced by gamma rays, consistent with a putative role in DNA repair and in cell cycle control.  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||IEA  go_process DNA repair|GO:0006281|16957774|IMP  go_process response to gamma radiation|GO:0010332|12582233|IEP  go_function ubiquitin-protein ligase activity|GO:0004842|15644464|IDA  product ATBRCA1; ubiquitin-protein ligase  note ATBRCA1; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: DNA repair, response to gamma radiation; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), BRCA1 (InterPro:IPR011364), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: BARD1 (BREAST CANCER ASSOCIATED RING 1); DNA binding / transcription coactivator (TAIR:AT1G04020.2); Has 7206 Blast hits to 6700 proteins in 866 species: Archae - 0; Bacteria - 105; Metazoa - 5462; Fungi - 370; Plants - 385; Viruses - 30; Other Eukaryotes - 854 (source: NCBI BLink).  protein_id AT4G21070.1p  transcript_id AT4G21070.1  protein_id AT4G21070.1p  transcript_id AT4G21070.1  
At4g21080	chr4:011254602	0.0	C/11254602-11255351	AT4G21080.1  CDS  gene_syn F7J7.20, F7J7_20  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product Dof-type zinc finger domain-containing protein  note Dof-type zinc finger domain-containing protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT4G21040.1); Has 617 Blast hits to 617 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 606; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT4G21080.1p  transcript_id AT4G21080.1  protein_id AT4G21080.1p  transcript_id AT4G21080.1  
At4g21090	chr4:011258212	0.0	C/11258212-11258269,11258043-11258110,11257432-11257544,11257216-11257322,11257034-11257083,11256862-11256944,11256663-11256777	AT4G21090.1  CDS  gene_syn F7J7.30, F7J7_30  go_component mitochondrion|GO:0005739||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function iron-sulfur cluster binding|GO:0051536||IEA  go_function 2 iron, 2 sulfur cluster binding|GO:0051537||IEA  go_function electron carrier activity|GO:0009055||ISS  product adrenodoxin-like ferredoxin 1  note adrenodoxin-like ferredoxin 1; FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041), Adrenodoxin (InterPro:IPR001055), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), Adrenodoxin, iron-sulphur binding site (InterPro:IPR018298); BEST Arabidopsis thaliana protein match is: adrenodoxin-like ferredoxin 2 (TAIR:AT4G05450.1); Has 3478 Blast hits to 3478 proteins in 761 species: Archae - 0; Bacteria - 1382; Metazoa - 220; Fungi - 90; Plants - 44; Viruses - 0; Other Eukaryotes - 1742 (source: NCBI BLink).  protein_id AT4G21090.1p  transcript_id AT4G21090.1  protein_id AT4G21090.1p  transcript_id AT4G21090.1  
At4g21090	chr4:011258212	0.0	C/11258212-11258269,11258043-11258110,11257432-11257544,11257216-11257322,11257034-11257083,11256862-11256944,11256663-11256777	AT4G21090.2  CDS  gene_syn F7J7.30, F7J7_30  go_component mitochondrion|GO:0005739||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function iron-sulfur cluster binding|GO:0051536||IEA  go_function 2 iron, 2 sulfur cluster binding|GO:0051537||IEA  go_function electron carrier activity|GO:0009055||ISS  product adrenodoxin-like ferredoxin 1  note adrenodoxin-like ferredoxin 1; FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041), Adrenodoxin (InterPro:IPR001055), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), Adrenodoxin, iron-sulphur binding site (InterPro:IPR018298); BEST Arabidopsis thaliana protein match is: adrenodoxin-like ferredoxin 2 (TAIR:AT4G05450.1); Has 3478 Blast hits to 3478 proteins in 761 species: Archae - 0; Bacteria - 1382; Metazoa - 220; Fungi - 90; Plants - 44; Viruses - 0; Other Eukaryotes - 1742 (source: NCBI BLink).  protein_id AT4G21090.2p  transcript_id AT4G21090.2  protein_id AT4G21090.2p  transcript_id AT4G21090.2  
At4g21090	chr4:011258212	0.0	C/11258212-11258269,11258043-11258110,11257432-11257544,11257216-11257322,11257034-11257083,11256862-11256944,11256663-11256777	AT4G21090.3  CDS  gene_syn F7J7.30, F7J7_30  go_component mitochondrion|GO:0005739||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function iron-sulfur cluster binding|GO:0051536||IEA  go_function 2 iron, 2 sulfur cluster binding|GO:0051537||IEA  go_function electron carrier activity|GO:0009055||ISS  product adrenodoxin-like ferredoxin 1  note adrenodoxin-like ferredoxin 1; FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041), Adrenodoxin (InterPro:IPR001055), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), Adrenodoxin, iron-sulphur binding site (InterPro:IPR018298); BEST Arabidopsis thaliana protein match is: adrenodoxin-like ferredoxin 2 (TAIR:AT4G05450.1); Has 3478 Blast hits to 3478 proteins in 761 species: Archae - 0; Bacteria - 1382; Metazoa - 220; Fungi - 90; Plants - 44; Viruses - 0; Other Eukaryotes - 1742 (source: NCBI BLink).  protein_id AT4G21090.3p  transcript_id AT4G21090.3  protein_id AT4G21090.3p  transcript_id AT4G21090.3  
At4g21100	chr4:011265206	0.0	C/11265206-11265309,11264705-11264753,11264473-11264532,11264292-11264383,11263833-11263884,11263632-11263694,11263494-11263543,11263233-11263308,11262756-11262965,11262538-11262644,11262326-11262434,11261934-11262134,11261623-11261838,11261237-11261347,11260794-11261069,11260423-11260697,11259988-11260336,11259618-11259902,11258916-11259497	AT4G21100.1  CDS  gene_syn DDB1B, Damaged DNA Binding Protein 1 B, F7J7.40, F7J7_40  gene DDB1B  function One of two closely related genes similar to a damaged DNA binding protein originally described in mammals. May form a complex with DET1 to regulate photomorphogenesis. Loss of function mutations are lethal. The DDB1b protein binds with a number of DWD-containing proteins and may form part of a CUL4-based E3 ubiquitin ligase.  go_component nucleus|GO:0005634|18552200|IDA  go_process embryonic development ending in seed dormancy|GO:0009793|12225661|IMP  go_function damaged DNA binding|GO:0003684|12225661|ISS  go_function protein binding|GO:0005515|18223036|IPI  product DDB1B (Damaged DNA Binding Protein 1 B); damaged DNA binding / protein binding  note Damaged DNA Binding Protein 1 B (DDB1B); FUNCTIONS IN: damaged DNA binding, protein binding; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Cleavage and polyadenylation specificity factor, A subunit, C-terminal (InterPro:IPR004871); BEST Arabidopsis thaliana protein match is: DDB1A (DAMAGED DNA BINDING PROTEIN 1A); DNA binding / protein binding (TAIR:AT4G05420.1); Has 1079 Blast hits to 879 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 468; Fungi - 265; Plants - 128; Viruses - 0; Other Eukaryotes - 218 (source: NCBI BLink).  protein_id AT4G21100.1p  transcript_id AT4G21100.1  protein_id AT4G21100.1p  transcript_id AT4G21100.1  
At4g21105	chr4:011266273	0.0	W/11266273-11266386,11266834-11266866	AT4G21105.2  CDS  go_component plasma membrane|GO:0005886|17151019|IDA  go_function cytochrome-c oxidase activity|GO:0004129||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  product cytochrome-c oxidase/ electron carrier  note cytochrome-c oxidase/ electron carrier; FUNCTIONS IN: electron carrier activity, cytochrome-c oxidase activity; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase, subunit VIIa (InterPro:IPR003177); Has 40 Blast hits to 38 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G21105.2p  transcript_id AT4G21105.2  protein_id AT4G21105.2p  transcript_id AT4G21105.2  
At4g21105	chr4:011266273	0.0	W/11266273-11266431,11266677-11266724	AT4G21105.1  CDS  go_component plasma membrane|GO:0005886|17151019|IDA  go_function cytochrome-c oxidase activity|GO:0004129||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  product cytochrome-c oxidase/ electron carrier  note cytochrome-c oxidase/ electron carrier; FUNCTIONS IN: electron carrier activity, cytochrome-c oxidase activity; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase, subunit VIIa (InterPro:IPR003177); Has 44 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G21105.1p  transcript_id AT4G21105.1  protein_id AT4G21105.1p  transcript_id AT4G21105.1  
At4g21110	chr4:011267673	0.0	W/11267673-11267766,11267867-11268054,11268619-11268774	AT4G21110.1  CDS  gene_syn F7J7.50, F7J7_50  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process biological_process|GO:0008150||ND  product G10 family protein  note G10 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: G10 protein (InterPro:IPR001748), BUD31/G10-related, conserved site (InterPro:IPR018230); Has 340 Blast hits to 340 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 83; Plants - 50; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT4G21110.1p  transcript_id AT4G21110.1  protein_id AT4G21110.1p  transcript_id AT4G21110.1  
At4g21120	chr4:011270318	0.0	W/11270318-11270726,11272308-11272970,11273063-11273775	AT4G21120.1  CDS  gene_syn AAT1, AMINO ACID TRANSPORTER 1, CAT1, CATIONIC AMINO ACID TRANSPORTER 1, F7J7.60, F7J7_60  gene AAT1  function Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Mediates efficient uptake of Lys, Arg and Glu in a yeast system.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|8618839|ISS  go_process basic amino acid transport|GO:0015802|8618839|IGI  go_process L-arginine import|GO:0043091|15377779|IGI  go_process L-glutamate import|GO:0051938|15377779|IGI  go_function L-glutamate transmembrane transporter activity|GO:0005313|15377779|IGI  go_function arginine transmembrane transporter activity|GO:0015181|15377779|IGI  go_function L-lysine transmembrane transporter activity|GO:0015189|15377779|IGI  go_function cationic amino acid transmembrane transporter activity|GO:0015326|8618839|IGI  go_function cationic amino acid transmembrane transporter activity|GO:0015326||ISS  product AAT1 (AMINO ACID TRANSPORTER 1); L-glutamate transmembrane transporter/ L-lysine transmembrane transporter/ arginine transmembrane transporter/ cationic amino acid transmembrane transporter  note AMINO ACID TRANSPORTER 1 (AAT1); FUNCTIONS IN: L-lysine transmembrane transporter activity, arginine transmembrane transporter activity, cationic amino acid transmembrane transporter activity, L-glutamate transmembrane transporter activity; INVOLVED IN: L-glutamate import, L-arginine import, basic amino acid transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cationic amino acid transporter (InterPro:IPR015606), Amino acid/polyamine transporter I (InterPro:IPR002293), Cationic amino acid transport permease (InterPro:IPR004755), Amino acid permease-associated region (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: CAT5 (CATIONIC AMINO ACID TRANSPORTER 5); L-glutamate transmembrane transporter/ L-lysine transmembrane transporter/ arginine transmembrane transporter/ cationic amino acid transmembrane transporter (TAIR:AT2G34960.1); Has 16978 Blast hits to 16856 proteins in 1237 species: Archae - 301; Bacteria - 12719; Metazoa - 1663; Fungi - 1139; Plants - 165; Viruses - 0; Other Eukaryotes - 991 (source: NCBI BLink).  protein_id AT4G21120.1p  transcript_id AT4G21120.1  protein_id AT4G21120.1p  transcript_id AT4G21120.1  
At4g21130	chr4:011274308	0.0	W/11274308-11274690,11274912-11275254,11275343-11275567,11275632-11275976,11276063-11276128,11276209-11276286	AT4G21130.1  CDS  gene_syn EMB2271, EMBRYO DEFECTIVE 2271, F7J7.70, F7J7_70  gene EMB2271  function similar to man and yeast U3-55K genes, involved in processing of pre-ribosomal RNA.  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process rRNA processing|GO:0006364|16054306|ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function nucleotide binding|GO:0000166||ISS  product EMB2271 (EMBRYO DEFECTIVE 2271); nucleotide binding  note EMBRYO DEFECTIVE 2271 (EMB2271); FUNCTIONS IN: nucleotide binding; INVOLVED IN: embryonic development ending in seed dormancy, rRNA processing; LOCATED IN: CUL4 RING ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT4G05410.1); Has 30409 Blast hits to 15381 proteins in 521 species: Archae - 36; Bacteria - 4351; Metazoa - 13417; Fungi - 5606; Plants - 2420; Viruses - 44; Other Eukaryotes - 4535 (source: NCBI BLink).  protein_id AT4G21130.1p  transcript_id AT4G21130.1  protein_id AT4G21130.1p  transcript_id AT4G21130.1  
At4g21140	chr4:011277491	0.0	C/11277491-11278222	AT4G21140.1  CDS  gene_syn F7J7.80, F7J7_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G05400.2); Has 20 Blast hits to 20 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G21140.1p  transcript_id AT4G21140.1  protein_id AT4G21140.1p  transcript_id AT4G21140.1  
At4g21150	chr4:011278646	0.0	W/11278646-11278791,11278927-11279119,11279199-11279288,11279529-11279591,11279800-11279869,11280020-11280084,11280421-11280475,11280599-11280720,11280804-11280919,11281304-11281373,11281622-11281726,11281828-11281917,11282000-11282148,11282332-11282443,11282526-11282609,11282732-11282812,11282901-11283125,11283210-11283332,11283483-11283599	AT4G21150.1  CDS  gene_syn F7J7.90, F7J7_90, HAP6, HAPLESS 6  gene HAP6  go_component mitochondrion|GO:0005739|15276431|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function dolichyl-diphosphooligosaccharide-protein glycotransferase activity|GO:0004579||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum membrane|GO:0005789||ISS  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process protein amino acid terminal N-glycosylation|GO:0006496||ISS  go_process response to cold|GO:0009409|14535880|IEP  product HAP6 (HAPLESS 6); dolichyl-diphosphooligosaccharide-protein glycotransferase  note HAPLESS 6 (HAP6); FUNCTIONS IN: dolichyl-diphosphooligosaccharide-protein glycotransferase activity; INVOLVED IN: protein amino acid terminal N-glycosylation, response to cold; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribophorin II (InterPro:IPR008814); Has 203 Blast hits to 203 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 134; Fungi - 36; Plants - 21; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT4G21150.1p  transcript_id AT4G21150.1  protein_id AT4G21150.1p  transcript_id AT4G21150.1  
At4g21160	chr4:011284694	0.0	W/11284694-11284733,11284819-11284900,11285055-11285130,11285296-11285459,11285543-11285693,11285825-11285947,11286065-11286160,11286251-11286532	AT4G21160.1  CDS  gene_syn AGD12, ARF-GAP domain 12, ZAC  gene ZAC  function ADP-ribosylation factor GTPase-activating protein containing zinc finger and C2 domains and a novel PI-3-P-binding protein region. Binds PI-3-P. Highest expression levels in flowering tissue, rosettes and roots. A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.  go_component vacuole|GO:0005773|15539469|IDA  go_component Golgi apparatus|GO:0005794|11202441|IDA  go_component plasma membrane|GO:0005886|11202441|IDA  go_component membrane|GO:0016020|11202441|IDA  go_process intracellular protein transport|GO:0006886|11202441|TAS  go_function phospholipid binding|GO:0005543|11202441|IDA  go_function ARF GTPase activator activity|GO:0008060|11202441|IDA  product ZAC; ARF GTPase activator/ phospholipid binding  note ZAC; FUNCTIONS IN: phospholipid binding, ARF GTPase activator activity; INVOLVED IN: intracellular protein transport; LOCATED IN: Golgi apparatus, plasma membrane, vacuole, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: AGD13 (ARF-GAP domain 13); ARF GTPase activator/ zinc ion binding (TAIR:AT4G05330.1); Has 6225 Blast hits to 5540 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 3949; Fungi - 832; Plants - 786; Viruses - 0; Other Eukaryotes - 658 (source: NCBI BLink).  protein_id AT4G21160.1p  transcript_id AT4G21160.1  protein_id AT4G21160.1p  transcript_id AT4G21160.1  
At4g21160	chr4:011284694	0.0	W/11284694-11284733,11284819-11284900,11285055-11285130,11285296-11285459,11285543-11285693,11285825-11285947,11286065-11286160,11286251-11286532	AT4G21160.2  CDS  gene_syn AGD12, ARF-GAP domain 12, ZAC  gene ZAC  function ADP-ribosylation factor GTPase-activating protein containing zinc finger and C2 domains and a novel PI-3-P-binding protein region. Binds PI-3-P. Highest expression levels in flowering tissue, rosettes and roots. A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.  go_component vacuole|GO:0005773|15539469|IDA  go_component Golgi apparatus|GO:0005794|11202441|IDA  go_component plasma membrane|GO:0005886|11202441|IDA  go_component membrane|GO:0016020|11202441|IDA  go_process intracellular protein transport|GO:0006886|11202441|TAS  go_function phospholipid binding|GO:0005543|11202441|IDA  go_function ARF GTPase activator activity|GO:0008060|11202441|IDA  product ZAC; ARF GTPase activator/ phospholipid binding  note ZAC; FUNCTIONS IN: phospholipid binding, ARF GTPase activator activity; INVOLVED IN: intracellular protein transport; LOCATED IN: Golgi apparatus, plasma membrane, vacuole, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: AGD13 (ARF-GAP domain 13); ARF GTPase activator/ zinc ion binding (TAIR:AT4G05330.1); Has 6225 Blast hits to 5540 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 3949; Fungi - 832; Plants - 786; Viruses - 0; Other Eukaryotes - 658 (source: NCBI BLink).  protein_id AT4G21160.2p  transcript_id AT4G21160.2  protein_id AT4G21160.2p  transcript_id AT4G21160.2  
At4g21160	chr4:011284694	0.0	W/11284694-11284733,11284819-11284900,11285055-11285130,11285296-11285459,11285543-11285693,11285825-11285947,11286065-11286160,11286251-11286532	AT4G21160.3  CDS  gene_syn AGD12, ARF-GAP domain 12, ZAC  gene ZAC  function ADP-ribosylation factor GTPase-activating protein containing zinc finger and C2 domains and a novel PI-3-P-binding protein region. Binds PI-3-P. Highest expression levels in flowering tissue, rosettes and roots. A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.  go_component vacuole|GO:0005773|15539469|IDA  go_component Golgi apparatus|GO:0005794|11202441|IDA  go_component plasma membrane|GO:0005886|11202441|IDA  go_component membrane|GO:0016020|11202441|IDA  go_process intracellular protein transport|GO:0006886|11202441|TAS  go_function phospholipid binding|GO:0005543|11202441|IDA  go_function ARF GTPase activator activity|GO:0008060|11202441|IDA  product ZAC; ARF GTPase activator/ phospholipid binding  note ZAC; FUNCTIONS IN: phospholipid binding, ARF GTPase activator activity; INVOLVED IN: intracellular protein transport; LOCATED IN: Golgi apparatus, plasma membrane, vacuole, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: AGD13 (ARF-GAP domain 13); ARF GTPase activator/ zinc ion binding (TAIR:AT4G05330.1); Has 6225 Blast hits to 5540 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 3949; Fungi - 832; Plants - 786; Viruses - 0; Other Eukaryotes - 658 (source: NCBI BLink).  protein_id AT4G21160.3p  transcript_id AT4G21160.3  protein_id AT4G21160.3p  transcript_id AT4G21160.3  
At4g21160	chr4:011284694	0.0	W/11284694-11284733,11284819-11284900,11285055-11285130,11285296-11285459,11285543-11285693,11285825-11285947,11286065-11286160,11286251-11286532	AT4G21160.4  CDS  gene_syn AGD12, ARF-GAP domain 12, ZAC  gene ZAC  function ADP-ribosylation factor GTPase-activating protein containing zinc finger and C2 domains and a novel PI-3-P-binding protein region. Binds PI-3-P. Highest expression levels in flowering tissue, rosettes and roots. A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.  go_component vacuole|GO:0005773|15539469|IDA  go_component Golgi apparatus|GO:0005794|11202441|IDA  go_component plasma membrane|GO:0005886|11202441|IDA  go_component membrane|GO:0016020|11202441|IDA  go_process intracellular protein transport|GO:0006886|11202441|TAS  go_function phospholipid binding|GO:0005543|11202441|IDA  go_function ARF GTPase activator activity|GO:0008060|11202441|IDA  product ZAC; ARF GTPase activator/ phospholipid binding  note ZAC; FUNCTIONS IN: phospholipid binding, ARF GTPase activator activity; INVOLVED IN: intracellular protein transport; LOCATED IN: Golgi apparatus, plasma membrane, vacuole, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: AGD13 (ARF-GAP domain 13); ARF GTPase activator/ zinc ion binding (TAIR:AT4G05330.1); Has 6225 Blast hits to 5540 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 3949; Fungi - 832; Plants - 786; Viruses - 0; Other Eukaryotes - 658 (source: NCBI BLink).  protein_id AT4G21160.4p  transcript_id AT4G21160.4  protein_id AT4G21160.4p  transcript_id AT4G21160.4  
At4g21170	chr4:011287872	0.0	C/11287872-11288513,11287232-11287820,11287125-11287179,11286756-11287074	AT4G21170.1  CDS  gene_syn F7J7.110, F7J7_110  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19290.1); Has 3404 Blast hits to 1650 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 4; Plants - 3358; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT4G21170.1p  transcript_id AT4G21170.1  protein_id AT4G21170.1p  transcript_id AT4G21170.1  
At4g21180	chr4:011289337	0.0	W/11289337-11289522,11289626-11289721,11289803-11289923,11290031-11290137,11290372-11290767,11290862-11290981,11291142-11291228,11291307-11292179	AT4G21180.1  CDS  gene_syn ATERDJ2B, F7J7.120, F7J7_120  gene ATERDJ2B  function J domain protein localized in ER membrane.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component integral to endoplasmic reticulum membrane|GO:0030176|18718935|IDA  go_process protein folding|GO:0006457||ISS  product ATERDJ2B; heat shock protein binding / unfolded protein binding  note ATERDJ2B; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: integral to endoplasmic reticulum membrane, endoplasmic reticulum, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: ATERDJ2A; heat shock protein binding / unfolded protein binding (TAIR:AT1G79940.3); Has 19631 Blast hits to 16275 proteins in 1931 species: Archae - 98; Bacteria - 5104; Metazoa - 6670; Fungi - 1556; Plants - 1126; Viruses - 82; Other Eukaryotes - 4995 (source: NCBI BLink).  protein_id AT4G21180.1p  transcript_id AT4G21180.1  protein_id AT4G21180.1p  transcript_id AT4G21180.1  
At4g21190	chr4:011293671	0.0	C/11293671-11293763,11293472-11293570,11293257-11293400,11292961-11293173,11292493-11292867	AT4G21190.1  CDS  gene_syn F7J7.130, F7J7_130, emb1417, embryo defective 1417  gene emb1417  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product emb1417 (embryo defective 1417)  note embryo defective 1417 (emb1417); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G18975.3); Has 144 Blast hits to 143 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 6; Fungi - 0; Plants - 126; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT4G21190.1p  transcript_id AT4G21190.1  protein_id AT4G21190.1p  transcript_id AT4G21190.1  
At4g21192	chr4:011294563	0.0	W/11294563-11294607,11294911-11295015,11295100-11295192	AT4G21192.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase biogenesis protein Cmc1-like (InterPro:IPR013892); Has 111 Blast hits to 111 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 71; Fungi - 29; Plants - 9; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G21192.1p  transcript_id AT4G21192.1  protein_id AT4G21192.1p  transcript_id AT4G21192.1  
At4g21192	chr4:011294563	0.0	W/11294563-11294607,11294911-11295015,11295100-11295192	AT4G21192.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase biogenesis protein Cmc1-like (InterPro:IPR013892); Has 111 Blast hits to 111 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 71; Fungi - 29; Plants - 9; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G21192.2p  transcript_id AT4G21192.2  protein_id AT4G21192.2p  transcript_id AT4G21192.2  
At4g21200	chr4:011302751	0.0	W/11302751-11303066,11303172-11303205,11303942-11304032	AT4G21200.2  CDS  gene_syn ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, ATGA2OX8, F7J7.140, F7J7_140, GA2OX8, GIBBERELLIN 2-OXIDASE 8  gene GA2OX8  function Encodes a protein with gibberellin 2-oxidase activity which acts specifically on C-20 gibberellins.  go_component cellular_component|GO:0005575||ND  go_function gibberellin 2-beta-dioxygenase activity|GO:0045543|12509528|IDA  product GA2OX8 (GIBBERELLIN 2-OXIDASE 8); gibberellin 2-beta-dioxygenase  note GIBBERELLIN 2-OXIDASE 8 (GA2OX8); FUNCTIONS IN: gibberellin 2-beta-dioxygenase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: GA2OX7 (GIBBERELLIN 2-OXIDASE 7); gibberellin 2-beta-dioxygenase (TAIR:AT1G50960.1).  protein_id AT4G21200.2p  transcript_id AT4G21200.2  protein_id AT4G21200.2p  transcript_id AT4G21200.2  
At4g21200	chr4:011302751	0.0	W/11302751-11303205,11303942-11304032	AT4G21200.3  CDS  gene_syn ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, ATGA2OX8, F7J7.140, F7J7_140, GA2OX8, GIBBERELLIN 2-OXIDASE 8  gene GA2OX8  function Encodes a protein with gibberellin 2-oxidase activity which acts specifically on C-20 gibberellins.  go_component cellular_component|GO:0005575||ND  go_function gibberellin 2-beta-dioxygenase activity|GO:0045543|12509528|IDA  product GA2OX8 (GIBBERELLIN 2-OXIDASE 8); gibberellin 2-beta-dioxygenase  note GIBBERELLIN 2-OXIDASE 8 (GA2OX8); FUNCTIONS IN: gibberellin 2-beta-dioxygenase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: GA2OX7 (GIBBERELLIN 2-OXIDASE 7); gibberellin 2-beta-dioxygenase (TAIR:AT1G50960.1).  protein_id AT4G21200.3p  transcript_id AT4G21200.3  protein_id AT4G21200.3p  transcript_id AT4G21200.3  
At4g21200	chr4:011302751	0.0	W/11302751-11303205,11305805-11306126,11306362-11306601	AT4G21200.1  CDS  gene_syn ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, ATGA2OX8, F7J7.140, F7J7_140, GA2OX8, GIBBERELLIN 2-OXIDASE 8  gene GA2OX8  function Encodes a protein with gibberellin 2-oxidase activity which acts specifically on C-20 gibberellins.  go_component cellular_component|GO:0005575||ND  go_function gibberellin 2-beta-dioxygenase activity|GO:0045543|12509528|IDA  product GA2OX8 (GIBBERELLIN 2-OXIDASE 8); gibberellin 2-beta-dioxygenase  note GIBBERELLIN 2-OXIDASE 8 (GA2OX8); FUNCTIONS IN: gibberellin 2-beta-dioxygenase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: GA2OX7 (GIBBERELLIN 2-OXIDASE 7); gibberellin 2-beta-dioxygenase (TAIR:AT1G50960.1); Has 5877 Blast hits to 5849 proteins in 684 species: Archae - 0; Bacteria - 713; Metazoa - 121; Fungi - 637; Plants - 3070; Viruses - 0; Other Eukaryotes - 1336 (source: NCBI BLink).  protein_id AT4G21200.1p  transcript_id AT4G21200.1  protein_id AT4G21200.1p  transcript_id AT4G21200.1  
At4g21210	chr4:011307002	0.0	W/11307002-11307475,11307770-11308184,11308266-11308403,11308484-11308587	AT4G21210.2  CDS  gene_syn ATRP1, F7J7.150, F7J7_150, PPDK REGULATORY PROTEIN  gene ATRP1  function Encodes a PPDK regulatory protein that has both protein kinase and protein phosphatase activities towards PPDK (pyruvate orthophosphate dikinase).  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|17996018|IDA  go_process biological_process|GO:0008150||ND  go_function protein kinase activity|GO:0004672|17996018|IDA  go_function protein kinase activity|GO:0004672||NAS  go_function phosphoprotein phosphatase activity|GO:0004721|17996018|IDA  go_function phosphoprotein phosphatase activity|GO:0004721||NAS  product ATRP1 (PPDK REGULATORY PROTEIN); phosphoprotein phosphatase/ protein kinase  note PPDK REGULATORY PROTEIN (ATRP1); FUNCTIONS IN: phosphoprotein phosphatase activity, protein kinase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate Pi dikinase regulator (InterPro:IPR017409), Protein of unknown function DUF299 (InterPro:IPR005177); BEST Arabidopsis thaliana protein match is: AtRP2 (PPDK regulatory protein 2); protein kinase (TAIR:AT3G01200.1); Has 2895 Blast hits to 2895 proteins in 739 species: Archae - 0; Bacteria - 1596; Metazoa - 4; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 1262 (source: NCBI BLink).  protein_id AT4G21210.2p  transcript_id AT4G21210.2  protein_id AT4G21210.2p  transcript_id AT4G21210.2  
At4g21210	chr4:011307002	0.0	W/11307002-11307475,11307770-11308403,11308484-11308587	AT4G21210.1  CDS  gene_syn ATRP1, F7J7.150, F7J7_150, PPDK REGULATORY PROTEIN  gene ATRP1  function Encodes a PPDK regulatory protein that has both protein kinase and protein phosphatase activities towards PPDK (pyruvate orthophosphate dikinase).  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|17996018|IDA  go_process biological_process|GO:0008150||ND  go_function protein kinase activity|GO:0004672|17996018|IDA  go_function protein kinase activity|GO:0004672||NAS  go_function phosphoprotein phosphatase activity|GO:0004721|17996018|IDA  go_function phosphoprotein phosphatase activity|GO:0004721||NAS  product ATRP1 (PPDK REGULATORY PROTEIN); phosphoprotein phosphatase/ protein kinase  note PPDK REGULATORY PROTEIN (ATRP1); FUNCTIONS IN: phosphoprotein phosphatase activity, protein kinase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate Pi dikinase regulator (InterPro:IPR017409), Protein of unknown function DUF299 (InterPro:IPR005177); BEST Arabidopsis thaliana protein match is: AtRP2 (PPDK regulatory protein 2); protein kinase (TAIR:AT3G01200.1); Has 2922 Blast hits to 2922 proteins in 740 species: Archae - 0; Bacteria - 1599; Metazoa - 4; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 1286 (source: NCBI BLink).  protein_id AT4G21210.1p  transcript_id AT4G21210.1  protein_id AT4G21210.1p  transcript_id AT4G21210.1  
At4g21213	chr4:011309879	0.0	W/11309879-11310139	AT4G21213.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G21213.1p  transcript_id AT4G21213.1  protein_id AT4G21213.1p  transcript_id AT4G21213.1  
At4g21215	chr4:011313275	0.0	C/11313275-11313421,11312663-11312771,11311343-11311598,11310890-11310971	AT4G21215.1  CDS  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; Has 17 Blast hits to 17 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G21215.1p  transcript_id AT4G21215.1  protein_id AT4G21215.1p  transcript_id AT4G21215.1  
At4g21215	chr4:011313275	0.0	C/11313275-11313421,11312663-11312777,11311343-11311598,11310890-11310971	AT4G21215.2  CDS  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; Has 17 Blast hits to 17 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G21215.2p  transcript_id AT4G21215.2  protein_id AT4G21215.2p  transcript_id AT4G21215.2  
At4g21216	chr4:011314441	0.0	C/11314441-11314593	AT4G21216.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G21216.1p  transcript_id AT4G21216.1  protein_id AT4G21216.1p  transcript_id AT4G21216.1  
At4g21220	chr4:011318890	0.0	C/11318890-11319067,11318267-11318483,11318097-11318173,11317947-11317996,11317795-11317859,11317662-11317713,11317511-11317581,11317351-11317417,11317198-11317269,11316978-11317043	AT4G21220.1  CDS  gene_syn F7J7.160, F7J7_160  go_function transferase activity|GO:0016740||IEA  product bacterial transferase hexapeptide repeat-containing protein  note bacterial transferase hexapeptide repeat-containing protein; FUNCTIONS IN: transferase activity; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), Bacterial transferase hexapeptide repeat (InterPro:IPR001451); BEST Arabidopsis thaliana protein match is: bacterial transferase hexapeptide repeat-containing protein (TAIR:AT4G05210.1); Has 8206 Blast hits to 8152 proteins in 1056 species: Archae - 43; Bacteria - 4364; Metazoa - 4; Fungi - 4; Plants - 27; Viruses - 0; Other Eukaryotes - 3764 (source: NCBI BLink).  protein_id AT4G21220.1p  transcript_id AT4G21220.1  protein_id AT4G21220.1p  transcript_id AT4G21220.1  
At4g21230	chr4:011320884	0.0	C/11320884-11321679,11320668-11320802,11320457-11320572,11320149-11320359,11319825-11320062,11319608-11319755,11319244-11319528	AT4G21230.1  CDS  gene_syn F7J7.170, F7J7_170  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G38830.1); Has 87245 Blast hits to 86184 proteins in 3154 species: Archae - 57; Bacteria - 7806; Metazoa - 38212; Fungi - 6774; Plants - 19267; Viruses - 402; Other Eukaryotes - 14727 (source: NCBI BLink).  protein_id AT4G21230.1p  transcript_id AT4G21230.1  protein_id AT4G21230.1p  transcript_id AT4G21230.1  
At4g21240	chr4:011322411	0.0	W/11322411-11323664	AT4G21240.1  CDS  gene_syn F7J7.180, F7J7_180  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G47790.1); Has 837 Blast hits to 823 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 837; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G21240.1p  transcript_id AT4G21240.1  protein_id AT4G21240.1p  transcript_id AT4G21240.1  
At4g21250	chr4:011325030	0.0	W/11325030-11325785,11325872-11326006,11326091-11326240,11326329-11326637	AT4G21250.1  CDS  gene_syn F7J7.190, F7J7_190  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF81 (InterPro:IPR002781); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61740.1); Has 1727 Blast hits to 1661 proteins in 331 species: Archae - 69; Bacteria - 622; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 939 (source: NCBI BLink).  protein_id AT4G21250.1p  transcript_id AT4G21250.1  protein_id AT4G21250.1p  transcript_id AT4G21250.1  
At4g21260	chr4:011327543	0.0	W/11327543-11327780,11327829-11328241,11328384-11328522,11328580-11328662,11328749-11329057	AT4G21260.1  CDS  gene_syn F7J7.200, F7J7_200  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF81 (InterPro:IPR002781); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21250.1); Has 1196 Blast hits to 1165 proteins in 286 species: Archae - 50; Bacteria - 523; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 533 (source: NCBI BLink).  protein_id AT4G21260.1p  transcript_id AT4G21260.1  protein_id AT4G21260.1p  transcript_id AT4G21260.1  
At4g21270	chr4:011333840	0.0	C/11333840-11333884,11333311-11333532,11333064-11333208,11332871-11332980,11332654-11332773,11332343-11332546,11332033-11332242,11331869-11331943,11331615-11331761,11331404-11331542,11331193-11331302,11330825-11330986,11330508-11330728,11330237-11330318,11330036-11330140,11329849-11329953,11329579-11329758	AT4G21270.1  CDS  gene_syn ARABIDOPSIS THALIANA KINESIN 1, ATK1, F7J7.210, F7J7_210, KATA, KATAP, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN  gene ATK1  function Encodes a kinesin-like motor protein heavy chain. Loss of function mutations have reduced fertility and are defective in spindle formation in male meiosis.  go_component nucleus|GO:0005634|8597656|IDA  go_component cytoplasm|GO:0005737|8597656|IDA  go_component minus-end kinesin complex|GO:0005872|12112142|TAS  go_component phragmoplast|GO:0009524|8597656|IDA  go_process anastral spindle assembly involved in male meiosis|GO:0009971|11973272|IMP  go_function microtubule motor activity|GO:0003777||ISS  go_function minus-end-directed microtubule motor activity|GO:0008569|12112142|IDA  go_function minus-end-directed microtubule motor activity|GO:0008569|12112142|TAS  product ATK1 (ARABIDOPSIS THALIANA KINESIN 1); microtubule motor/ minus-end-directed microtubule motor  note ARABIDOPSIS THALIANA KINESIN 1 (ATK1); FUNCTIONS IN: microtubule motor activity, minus-end-directed microtubule motor activity; INVOLVED IN: anastral spindle assembly involved in male meiosis; LOCATED IN: minus-end kinesin complex, nucleus, phragmoplast, cytoplasm; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATK5 (ARABIDOPSIS THALIANA KINESIN 5); microtubule motor (TAIR:AT4G05190.1); Has 90363 Blast hits to 48348 proteins in 1899 species: Archae - 809; Bacteria - 9354; Metazoa - 47500; Fungi - 6772; Plants - 3494; Viruses - 402; Other Eukaryotes - 22032 (source: NCBI BLink).  protein_id AT4G21270.1p  transcript_id AT4G21270.1  protein_id AT4G21270.1p  transcript_id AT4G21270.1  
At4g21280	chr4:011334446	0.0	W/11334446-11334722,11335092-11335390,11335489-11335587	AT4G21280.2  CDS  gene_syn OEC16, OXYGEN EVOLVING COMPLEX SUBUNIT 16 KDA, PHOTOSYSTEM II SUBUNIT Q, PHOTOSYSTEM II SUBUNIT Q-1, PHOTOSYSTEM II SUBUNIT QA, PSBQ, PSBQ-1, PSBQA, PSII-Q, T6K22.20  gene PSBQA  function Encodes the PsbQ subunit of the oxygen evolving complex of photosystem II.  go_component chloroplast|GO:0009507|18431481|IDA  go_function calcium ion binding|GO:0005509||IEA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  go_component oxygen evolving complex|GO:0009654||ISS  go_component chloroplast photosystem II|GO:0030095||ISS  go_process response to light stimulus|GO:0009416|10470848|IEP  go_process response to light intensity|GO:0009642|16282331|IEP  go_process peptidyl-cysteine S-nitrosylation|GO:0018119|18297659|IDA  product oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ)  note PHOTOSYSTEM II SUBUNIT QA (PSBQA); FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to light stimulus, peptidyl-cysteine S-nitrosylation, response to light intensity; LOCATED IN: chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast, oxygen evolving complex; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbQ (InterPro:IPR008797), Twin-arginine translocation pathway signal (InterPro:IPR006311); BEST Arabidopsis thaliana protein match is: PSBQ-2; calcium ion binding (TAIR:AT4G05180.1); Has 137 Blast hits to 137 proteins in 31 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G21280.2p  transcript_id AT4G21280.2  protein_id AT4G21280.2p  transcript_id AT4G21280.2  
At4g21280	chr4:011334446	0.0	W/11334446-11334722,11335095-11335390,11335489-11335587	AT4G21280.1  CDS  gene_syn OEC16, OXYGEN EVOLVING COMPLEX SUBUNIT 16 KDA, PHOTOSYSTEM II SUBUNIT Q, PHOTOSYSTEM II SUBUNIT Q-1, PHOTOSYSTEM II SUBUNIT QA, PSBQ, PSBQ-1, PSBQA, PSII-Q, T6K22.20  gene PSBQA  function Encodes the PsbQ subunit of the oxygen evolving complex of photosystem II.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_function calcium ion binding|GO:0005509||IEA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  go_component oxygen evolving complex|GO:0009654||ISS  go_component chloroplast photosystem II|GO:0030095||ISS  go_process response to light stimulus|GO:0009416|10470848|IEP  go_process response to light intensity|GO:0009642|16282331|IEP  go_process peptidyl-cysteine S-nitrosylation|GO:0018119|18297659|IDA  product oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ)  note PHOTOSYSTEM II SUBUNIT QA (PSBQA); FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to light stimulus, peptidyl-cysteine S-nitrosylation, response to light intensity; LOCATED IN: in 8 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbQ (InterPro:IPR008797), Twin-arginine translocation pathway signal (InterPro:IPR006311); BEST Arabidopsis thaliana protein match is: PSBQ-2; calcium ion binding (TAIR:AT4G05180.1); Has 143 Blast hits to 143 proteins in 34 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G21280.1p  transcript_id AT4G21280.1  protein_id AT4G21280.1p  transcript_id AT4G21280.1  
At4g21300	chr4:011336479	0.0	W/11336479-11339052	AT4G21300.1  CDS  gene_syn T6K22.30, T6K22_30  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G03580.1); Has 19749 Blast hits to 5268 proteins in 182 species: Archae - 1; Bacteria - 4; Metazoa - 89; Fungi - 126; Plants - 19072; Viruses - 0; Other Eukaryotes - 457 (source: NCBI BLink).  protein_id AT4G21300.1p  transcript_id AT4G21300.1  protein_id AT4G21300.1p  transcript_id AT4G21300.1  
At4g21310	chr4:011339689	0.0	C/11339689-11339787,11339416-11339621,11339134-11339335	AT4G21310.1  CDS  gene_syn T6K22.40, T6K22_40  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32280.1); Has 81 Blast hits to 81 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G21310.1p  transcript_id AT4G21310.1  protein_id AT4G21310.1p  transcript_id AT4G21310.1  
At4g21320	chr4:011340492	0.0	W/11340492-11340617,11340725-11340916,11341004-11341211,11341302-11341525,11341622-11341732	AT4G21320.1  CDS  gene_syn HEAT-STRESS-ASSOCIATED 32, HSA32, T6K22.50, T6K22_50  gene HSA32  function Encodes heat-stress-associated 32-kD protein. Up-regulated by heat shock. Thermotolerance in a knockout mutant was compromised following a long recovery period (> 24 h) after acclimation heat shock treatment.  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process response to heat|GO:0009408|16500991|IEP  go_process heat acclimation|GO:0010286|16500991|IMP  product HSA32 (HEAT-STRESS-ASSOCIATED 32); catalytic  note HEAT-STRESS-ASSOCIATED 32 (HSA32); FUNCTIONS IN: catalytic activity; INVOLVED IN: response to heat, heat acclimation; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), (2R)-phospho-3-sulpholactate synthase, ComA (InterPro:IPR003830), Peptidase S8, subtilisin-related (InterPro:IPR015500); Has 180 Blast hits to 180 proteins in 62 species: Archae - 27; Bacteria - 63; Metazoa - 0; Fungi - 20; Plants - 25; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT4G21320.1p  transcript_id AT4G21320.1  protein_id AT4G21320.1p  transcript_id AT4G21320.1  
At4g21323	chr4:011342494	0.0	W/11342494-11342730,11342817-11342908,11343003-11343100,11343205-11343366,11343451-11344112,11344210-11344493,11344580-11344694,11344789-11344975,11345058-11345632	AT4G21323.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product subtilase family protein  note subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259), Peptidase S8, subtilisin-related (InterPro:IPR015500); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT1G32950.1); Has 3358 Blast hits to 3106 proteins in 541 species: Archae - 86; Bacteria - 1881; Metazoa - 26; Fungi - 105; Plants - 896; Viruses - 0; Other Eukaryotes - 364 (source: NCBI BLink).  protein_id AT4G21323.1p  transcript_id AT4G21323.1  protein_id AT4G21323.1p  transcript_id AT4G21323.1  
At4g21326	chr4:011346685	0.0	W/11346685-11346796,11346912-11347003,11347094-11347191,11347308-11348125,11348212-11348492,11348595-11348709,11348810-11349002,11349097-11349653	AT4G21326.1  CDS  gene_syn ATSBT3.12, SUBTILASE 3.12  gene ATSBT3.12  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product ATSBT3.12 (SUBTILASE 3.12); identical protein binding / serine-type endopeptidase  note SUBTILASE 3.12 (ATSBT3.12); FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT4G10550.1); Has 2290 Blast hits to 2230 proteins in 393 species: Archae - 46; Bacteria - 1114; Metazoa - 23; Fungi - 54; Plants - 874; Viruses - 0; Other Eukaryotes - 179 (source: NCBI BLink).  protein_id AT4G21326.1p  transcript_id AT4G21326.1  protein_id AT4G21326.1p  transcript_id AT4G21326.1  
At4g21330	chr4:011349922	0.0	W/11349922-11350101,11350176-11350373,11350449-11350694	AT4G21330.1  CDS  gene_syn DYSFUNCTIONAL TAPETUM 1, DYT1, T6K22.60, T6K22_60  gene DYT1  function Encodes a bHLH transcription factor strongly expressed in the tapetum from late anther stage 5 to early stage 6, and at a lower level in meiocytes. dyt1 mutant exhibits abnormal anther morphology beginning at anther stage 4. DYT1 acts downstream of SPL/NZZ and EMS1/EXS , and is required for normal expression of AMS, MS1 and other tapetum preferential genes.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process regulation of transcription|GO:0045449|16831835|IMP  go_process tapetal layer development|GO:0048658|16831835|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product DYT1 (DYSFUNCTIONAL TAPETUM 1); DNA binding / transcription factor  note DYSFUNCTIONAL TAPETUM 1 (DYT1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: tapetal layer development, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: tapetum, floral meristem, anther primordium; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: AMS (ABORTED MICROSPORES); DNA binding / transcription factor (TAIR:AT2G16910.1); Has 614 Blast hits to 614 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 611; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G21330.1p  transcript_id AT4G21330.1  protein_id AT4G21330.1p  transcript_id AT4G21330.1  
At4g21340	chr4:011353064	0.0	W/11353064-11353314,11353410-11353629,11353718-11353816,11353952-11354017,11354153-11354218,11354316-11354372,11354482-11354628	AT4G21340.1  CDS  gene_syn B70, T6K22.70, T6K22_70  gene B70  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|12679534|ISS  product B70; transcription factor  note B70; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus, intracellular; EXPRESSED IN: root endodermis, primary root differentiation zone; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Krueppel-associated box (InterPro:IPR001909), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT4G05170.1); Has 740 Blast hits to 740 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 740; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G21340.1p  transcript_id AT4G21340.1  protein_id AT4G21340.1p  transcript_id AT4G21340.1  
At4g21350	chr4:011356143	0.0	C/11356143-11357267	AT4G21350.1  CDS  gene_syn B80, PLANT U-BOX 8, PUB8, T6K22.80, T6K22_80  gene PUB8  function Encodes a U-box/ARM repeat protein required fore self-incompatibility.  go_component ubiquitin ligase complex|GO:0000151||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process protein ubiquitination|GO:0016567|17412590|NAS  product PUB8 (PLANT U-BOX 8); binding / protein binding / ubiquitin-protein ligase/ zinc ion binding  note PLANT U-BOX 8 (PUB8); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, binding, zinc ion binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding / structural constituent of ribosome / ubiquitin-protein ligase (TAIR:AT2G28830.1); Has 2092 Blast hits to 1854 proteins in 161 species: Archae - 0; Bacteria - 18; Metazoa - 332; Fungi - 202; Plants - 1309; Viruses - 3; Other Eukaryotes - 228 (source: NCBI BLink).  protein_id AT4G21350.1p  transcript_id AT4G21350.1  protein_id AT4G21350.1p  transcript_id AT4G21350.1  
At4g21360	chr4:011364105	0.0	C/11364105-11368147	AT4G21360.1  mRNA_TE_gene  pseudo  gene_syn T6K22.90, T6K22_90  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At4g21362	chr4:011375364	0.0	W/11375364-11375481	AT4G21362.1  miRNA  gene_syn MICRORNA867A, MIR867A  gene MIR867A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUGAACAUGGUUUAUUAGGAA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR867A (MICRORNA867A); miRNA  transcript_id AT4G21362.1  
At4g21363	chr4:011378901	0.0	W/11378901-11379658	AT4G21363.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 6.4e-18 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At4g21366	chr4:011383541	0.0	W/11383541-11383684,11383761-11383955	AT4G21366.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  product ATP binding / protein tyrosine kinase  note ATP binding / protein tyrosine kinase; FUNCTIONS IN: protein tyrosine kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ARK3 (A. THALIANA RECEPTOR KINASE 3); kinase/ transmembrane receptor protein serine/threonine kinase (TAIR:AT4G21380.1); Has 6809 Blast hits to 6730 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 0; Plants - 6789; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G21366.1p  transcript_id AT4G21366.1  protein_id AT4G21366.1p  transcript_id AT4G21366.1  
At4g21370	chr4:011383884	0.0	C/11383884-11387136	AT4G21370.1  pseudogenic_transcript  pseudo  gene_syn PSEUDOGENE OF S-LOCUS RECEPTOR KINASE A, PSEUDOSRKA, T6K22.100, T6K22_100  gene PSEUDOSRKA  function The Col-0 pseudoSRKA allele contains a frameshift mutation that introduces a premature stop codon within the fourth of seven exons found in SRK genes. Its SCR sequences consist of several truncated pseudoSCR sequences, the longest of which is designated pseudoSCR1.  note similar to ARK1 (A. THALIANA RECEPTOR KINASE I), kinase [Arabidopsis thaliana] (TAIR:AT1G65790.1); similar to ARK3 (Arabidopsis Receptor Kinase 3), kinase [Arabidopsis thaliana] (TAIR:AT4G21380.1); similar to ARK2 (Arabidopsis Receptor Kinase 2), kinase [Arabidopsis thaliana] (TAIR:AT1G65800.1); similar to S receptor kinase SRK37 [Arabidopsis lyrata] (GB:ABF71379.1); similar to SRKa [Arabidopsis lyrata] (GB:BAB40986.1); similar to S receptor kinase SRK04 [Arabidopsis halleri] (GB:ABF71368.1); contains InterPro domain Apple-like (InterPro:IPR003609); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain PAN-like, type 2 (InterPro:IPR013227); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480)  
At4g21380	chr4:011391794	0.0	C/11391794-11393090,11390778-11390912,11390495-11390688,11390206-11390416,11389877-11390114,11389630-11389780,11389219-11389545	AT4G21380.1  CDS  gene_syn A. THALIANA RECEPTOR KINASE 3, ARK3, T6K22.110, T6K22_110  gene ARK3  function encodes a putative receptor-like serine/threonine protein kinases that is similar to Brassica self-incompatibility (S) locus. Expressed in root. Shoot expression limited to limited to the root-hypocotyl transition zone and at the base of lateral roots as well as in axillary buds, and pedicels.  go_component vacuole|GO:0005773|14760709|IDA  go_component plasma membrane|GO:0005886|14506206|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function transmembrane receptor protein serine/threonine kinase activity|GO:0004675|11814694|ISS  go_function kinase activity|GO:0016301||ISS  product ARK3 (A. THALIANA RECEPTOR KINASE 3); kinase/ transmembrane receptor protein serine/threonine kinase  note A. THALIANA RECEPTOR KINASE 3 (ARK3); FUNCTIONS IN: transmembrane receptor protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), PAN-like, type 2 (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: ARK2 (A. THALIANA RECEPTOR KINASE 2); kinase/ protein kinase/ transmembrane receptor protein serine/threonine kinase (TAIR:AT1G65800.1); Has 86843 Blast hits to 85550 proteins in 3246 species: Archae - 50; Bacteria - 7398; Metazoa - 37882; Fungi - 6741; Plants - 19636; Viruses - 382; Other Eukaryotes - 14754 (source: NCBI BLink).  protein_id AT4G21380.1p  transcript_id AT4G21380.1  protein_id AT4G21380.1p  transcript_id AT4G21380.1  
At4g21390	chr4:011396076	0.0	C/11396076-11397474,11395755-11395990,11395460-11395670,11395141-11395378,11394894-11395041,11394458-11394775	AT4G21390.1  CDS  gene_syn B120, T6K22.120, T6K22_120  gene B120  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function protein kinase activity|GO:0004672||ISS  go_function sugar binding|GO:0005529||ISS  product B120; ATP binding / protein kinase/ protein serine/threonine kinase/ sugar binding  note B120; FUNCTIONS IN: protein serine/threonine kinase activity, sugar binding, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: plasma membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-like, type 2 (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G61610.1); Has 86188 Blast hits to 85016 proteins in 3055 species: Archae - 51; Bacteria - 7429; Metazoa - 37557; Fungi - 6635; Plants - 19623; Viruses - 384; Other Eukaryotes - 14509 (source: NCBI BLink).  protein_id AT4G21390.1p  transcript_id AT4G21390.1  protein_id AT4G21390.1p  transcript_id AT4G21390.1  
At4g21400	chr4:011400869	0.0	C/11400869-11401709,11400625-11400801,11400461-11400573,11399838-11400376,11399612-11399768,11399218-11399526	AT4G21400.1  CDS  gene_syn F18E5.20  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G21410.1); Has 82188 Blast hits to 81225 proteins in 3048 species: Archae - 42; Bacteria - 6835; Metazoa - 36175; Fungi - 6282; Plants - 18841; Viruses - 380; Other Eukaryotes - 13633 (source: NCBI BLink).  protein_id AT4G21400.1p  transcript_id AT4G21400.1  protein_id AT4G21400.1p  transcript_id AT4G21400.1  
At4g21410	chr4:011404191	0.0	C/11404191-11405025,11403954-11404082,11403712-11403866,11403417-11403627,11403094-11403337,11402863-11403019,11402463-11402771	AT4G21410.1  CDS  gene_syn F18E5.30  go_component vacuole|GO:0005773|14760709|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to abscisic acid stimulus|GO:0009737|16258012|IEP  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G21400.1); Has 88589 Blast hits to 87458 proteins in 3258 species: Archae - 51; Bacteria - 7783; Metazoa - 38493; Fungi - 6974; Plants - 19666; Viruses - 409; Other Eukaryotes - 15213 (source: NCBI BLink).  protein_id AT4G21410.1p  transcript_id AT4G21410.1  protein_id AT4G21410.1p  transcript_id AT4G21410.1  
At4g21420	chr4:011405812	0.0	W/11405812-11407512	AT4G21420.1  mRNA_TE_gene  pseudo  gene_syn F18E5.40  note Transposable element gene, gypsy-like retrotransposon family, has a 6.9e-06 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At4g21430	chr4:011411536	0.0	C/11411536-11412159,11411291-11411436,11410763-11410868,11410526-11410658,11410294-11410357,11409591-11410197,11409165-11409494,11408578-11408973,11408415-11408487,11408232-11408317,11408020-11408139,11407835-11407933	AT4G21430.1  CDS  gene_syn B160, F18E5.50  gene B160  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transcription factor activity|GO:0003700||ISS  product B160; protein binding / transcription factor/ zinc ion binding  note B160; FUNCTIONS IN: protein binding, transcription factor activity, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, RING-type (InterPro:IPR001841), WRC (InterPro:IPR014977); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT1G11950.1); Has 673 Blast hits to 601 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 255; Fungi - 14; Plants - 390; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT4G21430.1p  transcript_id AT4G21430.1  protein_id AT4G21430.1p  transcript_id AT4G21430.1  
At4g21437	chr4:011416814	0.0	C/11416814-11417404	AT4G21437.1  pseudogenic_transcript  pseudo  function unknown pseudogene  
At4g21440	chr4:011419520	0.0	C/11419520-11419652,11419301-11419430,11418425-11419214	AT4G21440.1  CDS  gene_syn A. THALIANA MYB 4, ARABIDOPSIS MYB-LIKE 102, ARABIDOPSIS THALIANA MYOSIN 4, ATM4, ATMYB102, F18E5.60  gene ATMYB102  function Encodes a MYB transcription factor involved in wounding and osmotic stress response. Member of the R2R3 factor gene family.  go_process response to osmotic stress|GO:0006970|12857823|IEP  go_process response to wounding|GO:0009611|12857823|IEP  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ATMYB102 (ARABIDOPSIS MYB-LIKE 102); DNA binding / transcription factor  note ARABIDOPSIS MYB-LIKE 102 (ATMYB102); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to salt stress, response to abscisic acid stimulus, response to wounding, response to osmotic stress, regulation of transcription; EXPRESSED IN: leaf lamina base, stem, sperm cell, flower, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: AtMYB74 (myb domain protein 74); DNA binding / transcription factor (TAIR:AT4G05100.1); Has 6371 Blast hits to 5905 proteins in 358 species: Archae - 0; Bacteria - 0; Metazoa - 627; Fungi - 304; Plants - 3813; Viruses - 3; Other Eukaryotes - 1624 (source: NCBI BLink).  protein_id AT4G21440.1p  transcript_id AT4G21440.1  protein_id AT4G21440.1p  transcript_id AT4G21440.1  
At4g21445	chr4:011424781	0.0	W/11424781-11425077,11425423-11425590	AT4G21445.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; Has 55 Blast hits to 55 proteins in 29 species: Archae - 0; Bacteria - 37; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G21445.1p  transcript_id AT4G21445.1  protein_id AT4G21445.1p  transcript_id AT4G21445.1  
At4g21450	chr4:011426136	0.0	W/11426136-11426493,11426981-11427051,11427131-11427212,11427312-11427430,11427692-11427769,11427857-11427976,11428066-11428125	AT4G21450.1  CDS  gene_syn F18E5.70, F18E5_70  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function structural molecule activity|GO:0005198||IEA  go_process biological_process|GO:0008150||ND  go_function structural molecule activity|GO:0005198||ISS  product vesicle-associated membrane family protein / VAMP family protein  note vesicle-associated membrane family protein / VAMP family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535); BEST Arabidopsis thaliana protein match is: vesicle-associated membrane family protein / VAMP family protein (TAIR:AT4G05060.1); Has 2198 Blast hits to 1828 proteins in 219 species: Archae - 0; Bacteria - 116; Metazoa - 1254; Fungi - 217; Plants - 204; Viruses - 6; Other Eukaryotes - 401 (source: NCBI BLink).  protein_id AT4G21450.1p  transcript_id AT4G21450.1  protein_id AT4G21450.1p  transcript_id AT4G21450.1  
At4g21450	chr4:011426136	0.0	W/11426136-11426493,11426981-11427051,11427131-11427212,11427312-11427439	AT4G21450.2  CDS  gene_syn F18E5.70, F18E5_70  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function structural molecule activity|GO:0005198||IEA  go_process biological_process|GO:0008150||ND  go_function structural molecule activity|GO:0005198||ISS  product vesicle-associated membrane family protein / VAMP family protein  note vesicle-associated membrane family protein / VAMP family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535); BEST Arabidopsis thaliana protein match is: vesicle-associated membrane family protein / VAMP family protein (TAIR:AT4G05060.1); Has 2065 Blast hits to 1693 proteins in 208 species: Archae - 0; Bacteria - 116; Metazoa - 1177; Fungi - 189; Plants - 177; Viruses - 6; Other Eukaryotes - 400 (source: NCBI BLink).  protein_id AT4G21450.2p  transcript_id AT4G21450.2  protein_id AT4G21450.2p  transcript_id AT4G21450.2  
At4g21460	chr4:011428530	0.0	W/11428530-11428758,11428978-11429379,11429699-11430113,11430189-11430390	AT4G21460.1  CDS  gene_syn F18E5.80, F18E5_80  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18240.2); Has 233 Blast hits to 225 proteins in 82 species: Archae - 0; Bacteria - 26; Metazoa - 59; Fungi - 40; Plants - 29; Viruses - 2; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT4G21460.1p  transcript_id AT4G21460.1  protein_id AT4G21460.1p  transcript_id AT4G21460.1  
At4g21470	chr4:011431284	0.0	W/11431284-11431359,11431446-11431632,11431711-11431841,11431930-11431999,11432094-11432159,11432237-11432391,11432491-11432586,11432674-11432825,11432900-11432983,11433075-11433197	AT4G21470.1  CDS  gene_syn ATFMN/FHY, F18E5.90, F18E5_90, riboflavin kinase/FMN hydrolase  gene ATFMN/FHY  function Bifunctional enzyme that catalyzes hydrolysis of FMN to riboflavin, and phosphorylation of riboflavin to FMN.  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_process riboflavin biosynthetic process|GO:0009231||IEA  go_process riboflavin biosynthetic process|GO:0009231||ISS  go_function FMN adenylyltransferase activity|GO:0003919|16183635|IDA  go_function riboflavin kinase activity|GO:0008531|16183635|IDA  go_function riboflavin kinase activity|GO:0008531||ISS  product ATFMN/FHY (riboflavin kinase/FMN hydrolase); FMN adenylyltransferase/ riboflavin kinase  note riboflavin kinase/FMN hydrolase (ATFMN/FHY); FUNCTIONS IN: riboflavin kinase activity, FMN adenylyltransferase activity; INVOLVED IN: riboflavin biosynthetic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Haloacid dehydrogenase/epoxide hydrolase (InterPro:IPR005833), Riboflavin kinase (InterPro:IPR015865), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: GPP1 (glycerol-3-phosphatase 1); catalytic/ hydrolase (TAIR:AT4G25840.1); Has 11570 Blast hits to 11564 proteins in 1433 species: Archae - 73; Bacteria - 8004; Metazoa - 348; Fungi - 344; Plants - 237; Viruses - 3; Other Eukaryotes - 2561 (source: NCBI BLink).  protein_id AT4G21470.1p  transcript_id AT4G21470.1  protein_id AT4G21470.1p  transcript_id AT4G21470.1  
At4g21480	chr4:011435152	0.0	C/11435152-11435284,11434746-11435068,11433833-11434456,11433320-11433748	AT4G21480.1  CDS  gene_syn F18E5.100, F18E5_100  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product carbohydrate transmembrane transporter/ sugar:hydrogen symporter  note carbohydrate transmembrane transporter/ sugar:hydrogen symporter; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Sugar/inositol transporter (InterPro:IPR003663), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: STP1 (SUGAR TRANSPORTER 1); carbohydrate transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT1G11260.1); Has 18452 Blast hits to 18094 proteins in 1171 species: Archae - 253; Bacteria - 7884; Metazoa - 3430; Fungi - 4485; Plants - 1335; Viruses - 2; Other Eukaryotes - 1063 (source: NCBI BLink).  protein_id AT4G21480.1p  transcript_id AT4G21480.1  protein_id AT4G21480.1p  transcript_id AT4G21480.1  
At4g21490	chr4:011439238	0.0	C/11439238-11439326,11438637-11438904,11438349-11438555,11438021-11438271,11437736-11437952,11437535-11437639,11437165-11437440,11436932-11437053,11436681-11436800,11436495-11436582	AT4G21490.1  CDS  gene_syn F18E5.110, F18E5_110, NDB3  gene NDB3  go_function NADH dehydrogenase activity|GO:0003954||ISS  product NDB3; NADH dehydrogenase  note NDB3; FUNCTIONS IN: NADH dehydrogenase activity; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), EF-HAND 2 (InterPro:IPR018249), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: NDB2 (NAD(P)H dehydrogenase B2); FAD binding / disulfide oxidoreductase/ oxidoreductase (TAIR:AT4G05020.1); Has 9061 Blast hits to 8796 proteins in 1431 species: Archae - 234; Bacteria - 6513; Metazoa - 102; Fungi - 507; Plants - 286; Viruses - 0; Other Eukaryotes - 1419 (source: NCBI BLink).  protein_id AT4G21490.1p  transcript_id AT4G21490.1  protein_id AT4G21490.1p  transcript_id AT4G21490.1  
At4g21500	chr4:011441065	0.0	C/11441065-11441712	AT4G21500.1  CDS  gene_syn F18E5.120, F18E5_120  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G05018.1); Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G21500.1p  transcript_id AT4G21500.1  protein_id AT4G21500.1p  transcript_id AT4G21500.1  
At4g21510	chr4:011446630	0.0	C/11446630-11447025,11446474-11446548,11446193-11446399	AT4G21510.1  CDS  gene_syn F18E5.130, F18E5_130  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G05010.1); Has 47 Blast hits to 47 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G21510.1p  transcript_id AT4G21510.1  protein_id AT4G21510.1p  transcript_id AT4G21510.1  
At4g21520	chr4:011450202	0.0	C/11450202-11450377,11450018-11450080,11449849-11449901,11449671-11449751,11449502-11449575,11449326-11449408,11449122-11449228,11448884-11449026,11448753-11448800,11448485-11448537,11448149-11448233,11447935-11448001,11447726-11447848,11447514-11447635	AT4G21520.1  CDS  gene_syn F18E5.140, F18E5_140  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08390.1); Has 7292 Blast hits to 4548 proteins in 299 species: Archae - 26; Bacteria - 2293; Metazoa - 2028; Fungi - 1260; Plants - 498; Viruses - 0; Other Eukaryotes - 1187 (source: NCBI BLink).  protein_id AT4G21520.1p  transcript_id AT4G21520.1  protein_id AT4G21520.1p  transcript_id AT4G21520.1  
At4g21530	chr4:011450743	0.0	W/11450743-11450820,11450905-11451016,11451231-11451322,11451478-11451561,11451755-11451994,11452335-11452415,11452586-11452737,11452892-11453052,11453142-11453242,11453319-11453393,11453513-11453692,11453808-11453890,11453968-11454066,11454376-11454480,11454768-11454906,11455038-11455256,11455354-11455506,11455586-11455667,11455765-11455862	AT4G21530.1  CDS  gene_syn F18E5.150, F18E5_150  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product nucleotide binding  note nucleotide binding; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: SPHK1 (SPHINGOSINE KINASE 1); D-erythro-sphingosine kinase/ diacylglycerol kinase/ sphinganine kinase (TAIR:AT4G21540.1); Has 1806 Blast hits to 1423 proteins in 191 species: Archae - 0; Bacteria - 606; Metazoa - 583; Fungi - 291; Plants - 111; Viruses - 0; Other Eukaryotes - 215 (source: NCBI BLink).  protein_id AT4G21530.1p  transcript_id AT4G21530.1  protein_id AT4G21530.1p  transcript_id AT4G21530.1  
At4g21540	chr4:011454775	0.0	W/11454775-11454906,11455038-11455256,11455354-11455536,11455586-11455667,11455765-11455858,11456148-11456560,11456636-11456758,11456851-11456951,11457225-11457297,11457423-11457509,11457605-11457682,11457807-11457931,11458005-11458268,11458398-11458520,11458611-11458788,11459029-11459081,11459570-11459954,11460045-11460167,11460245-11460345,11460643-11460715,11460904-11460990,11461085-11461162,11461294-11461364,11461548-11461811,11461914-11462036,11462165-11462356	AT4G21540.1  CDS  gene_syn F18E5.160, F18E5_160, SPHINGOSINE KINASE 1, SPHK1  gene SPHK1  function Encodes a sphingosine kinase, also has enzyme activity towards other plant long-chain sphingoid bases. Involved in guard cell ABA signalling and seed germination.  go_component vacuole|GO:0005773|15539469|IDA  go_component plant-type vacuole membrane|GO:0009705|18643979|IDA  go_process activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|GO:0007205||ISS  go_process response to abscisic acid stimulus|GO:0009737|18557834|IMP  go_process seed germination|GO:0009845|18557834|IMP  go_function diacylglycerol kinase activity|GO:0004143||ISS  go_function sphinganine kinase activity|GO:0008481|18557834|IDA  go_function D-erythro-sphingosine kinase activity|GO:0017050|15665242|TAS  go_function D-erythro-sphingosine kinase activity|GO:0017050|18557834|IDA  product SPHK1 (SPHINGOSINE KINASE 1); D-erythro-sphingosine kinase/ diacylglycerol kinase/ sphinganine kinase  note SPHINGOSINE KINASE 1 (SPHK1); FUNCTIONS IN: sphinganine kinase activity, diacylglycerol kinase activity, D-erythro-sphingosine kinase activity; INVOLVED IN: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway, response to abscisic acid stimulus, seed germination; LOCATED IN: plant-type vacuole membrane, vacuole; CONTAINS InterPro DOMAIN/s: Diacylglycerol kinase, catalytic region (InterPro:IPR001206); BEST Arabidopsis thaliana protein match is: nucleotide binding (TAIR:AT4G21530.1); Has 3778 Blast hits to 2112 proteins in 525 species: Archae - 0; Bacteria - 1692; Metazoa - 994; Fungi - 231; Plants - 246; Viruses - 0; Other Eukaryotes - 615 (source: NCBI BLink).  protein_id AT4G21540.1p  transcript_id AT4G21540.1  protein_id AT4G21540.1p  transcript_id AT4G21540.1  
At4g21540	chr4:011459609	0.0	W/11459609-11459954,11460045-11460167,11460245-11460345,11460643-11460715,11460904-11460990,11461085-11461162,11461294-11461341,11461548-11461654	AT4G21540.3  CDS  gene_syn F18E5.160, F18E5_160, SPHINGOSINE KINASE 1, SPHK1  gene SPHK1  function Encodes a sphingosine kinase, also has enzyme activity towards other plant long-chain sphingoid bases. Involved in guard cell ABA signalling and seed germination.  go_component vacuole|GO:0005773|15539469|IDA  go_component plant-type vacuole membrane|GO:0009705|18643979|IDA  go_process activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|GO:0007205||ISS  go_process response to abscisic acid stimulus|GO:0009737|18557834|IMP  go_process seed germination|GO:0009845|18557834|IMP  go_function diacylglycerol kinase activity|GO:0004143||ISS  go_function sphinganine kinase activity|GO:0008481|18557834|IDA  go_function D-erythro-sphingosine kinase activity|GO:0017050|15665242|TAS  go_function D-erythro-sphingosine kinase activity|GO:0017050|18557834|IDA  product SPHK1 (SPHINGOSINE KINASE 1); D-erythro-sphingosine kinase/ diacylglycerol kinase/ sphinganine kinase  note SPHINGOSINE KINASE 1 (SPHK1); FUNCTIONS IN: sphinganine kinase activity, diacylglycerol kinase activity, D-erythro-sphingosine kinase activity; INVOLVED IN: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway, response to abscisic acid stimulus, seed germination; LOCATED IN: plant-type vacuole membrane, vacuole; CONTAINS InterPro DOMAIN/s: Diacylglycerol kinase, catalytic region (InterPro:IPR001206); BEST Arabidopsis thaliana protein match is: ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1); D-erythro-sphingosine kinase/ diacylglycerol kinase (TAIR:AT5G23450.2); Has 1699 Blast hits to 1695 proteins in 456 species: Archae - 0; Bacteria - 813; Metazoa - 449; Fungi - 109; Plants - 85; Viruses - 0; Other Eukaryotes - 243 (source: NCBI BLink).  protein_id AT4G21540.3p  transcript_id AT4G21540.3  protein_id AT4G21540.3p  transcript_id AT4G21540.3  
At4g21540	chr4:011459609	0.0	W/11459609-11459954,11460045-11460167,11460245-11460345,11460643-11460715,11460904-11460990,11461085-11461162,11461294-11461364,11461548-11461811,11461914-11462036,11462165-11462356	AT4G21540.2  CDS  gene_syn F18E5.160, F18E5_160, SPHINGOSINE KINASE 1, SPHK1  gene SPHK1  function Encodes a sphingosine kinase, also has enzyme activity towards other plant long-chain sphingoid bases. Involved in guard cell ABA signalling and seed germination.  go_component vacuole|GO:0005773|15539469|IDA  go_component plant-type vacuole membrane|GO:0009705|18643979|IDA  go_process activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|GO:0007205||ISS  go_process response to abscisic acid stimulus|GO:0009737|18557834|IMP  go_process seed germination|GO:0009845|18557834|IMP  go_function diacylglycerol kinase activity|GO:0004143||ISS  go_function sphinganine kinase activity|GO:0008481|18557834|IDA  go_function D-erythro-sphingosine kinase activity|GO:0017050|15665242|TAS  go_function D-erythro-sphingosine kinase activity|GO:0017050|18557834|IDA  product SPHK1 (SPHINGOSINE KINASE 1); D-erythro-sphingosine kinase/ diacylglycerol kinase/ sphinganine kinase  note SPHINGOSINE KINASE 1 (SPHK1); FUNCTIONS IN: sphinganine kinase activity, diacylglycerol kinase activity, D-erythro-sphingosine kinase activity; INVOLVED IN: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway, response to abscisic acid stimulus, seed germination; LOCATED IN: plant-type vacuole membrane, vacuole; CONTAINS InterPro DOMAIN/s: Diacylglycerol kinase, catalytic region (InterPro:IPR001206); BEST Arabidopsis thaliana protein match is: ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1); D-erythro-sphingosine kinase/ diacylglycerol kinase (TAIR:AT5G23450.2); Has 2196 Blast hits to 2063 proteins in 520 species: Archae - 0; Bacteria - 1070; Metazoa - 532; Fungi - 119; Plants - 126; Viruses - 0; Other Eukaryotes - 349 (source: NCBI BLink).  protein_id AT4G21540.2p  transcript_id AT4G21540.2  protein_id AT4G21540.2p  transcript_id AT4G21540.2  
At4g21540	chr4:011460703	0.0	W/11460703-11460715,11460904-11460990,11461085-11461162,11461294-11461364,11461548-11461811,11461914-11462036,11462165-11462356	AT4G21540.4  CDS  gene_syn F18E5.160, F18E5_160, SPHINGOSINE KINASE 1, SPHK1  gene SPHK1  function Encodes a sphingosine kinase, also has enzyme activity towards other plant long-chain sphingoid bases. Involved in guard cell ABA signalling and seed germination.  go_component vacuole|GO:0005773|15539469|IDA  go_component plant-type vacuole membrane|GO:0009705|18643979|IDA  go_process activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|GO:0007205||ISS  go_process response to abscisic acid stimulus|GO:0009737|18557834|IMP  go_process seed germination|GO:0009845|18557834|IMP  go_function diacylglycerol kinase activity|GO:0004143||ISS  go_function sphinganine kinase activity|GO:0008481|18557834|IDA  go_function D-erythro-sphingosine kinase activity|GO:0017050|15665242|TAS  go_function D-erythro-sphingosine kinase activity|GO:0017050|18557834|IDA  product SPHK1 (SPHINGOSINE KINASE 1); D-erythro-sphingosine kinase/ diacylglycerol kinase/ sphinganine kinase  note SPHINGOSINE KINASE 1 (SPHK1); FUNCTIONS IN: sphinganine kinase activity, diacylglycerol kinase activity, D-erythro-sphingosine kinase activity; INVOLVED IN: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway, response to abscisic acid stimulus, seed germination; LOCATED IN: plant-type vacuole membrane, vacuole; BEST Arabidopsis thaliana protein match is: ceramide kinase-related (TAIR:AT5G51290.1); Has 799 Blast hits to 695 proteins in 152 species: Archae - 0; Bacteria - 55; Metazoa - 387; Fungi - 94; Plants - 100; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).  protein_id AT4G21540.4p  transcript_id AT4G21540.4  protein_id AT4G21540.4p  transcript_id AT4G21540.4  
At4g21550	chr4:011463987	0.0	W/11463987-11464072,11464426-11464507,11464603-11464713,11464964-11465596,11465839-11465898,11466115-11466289,11466512-11466591,11467048-11467308,11467389-11467487,11467698-11467735,11467946-11468486	AT4G21550.1  CDS  gene_syn F18E5.170, F18E5_170, VAL3, VP1/ABI3-LIKE 3  gene VAL3  go_component endomembrane system|GO:0012505||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product VAL3 (VP1/ABI3-LIKE 3); transcription factor  note VP1/ABI3-LIKE 3 (VAL3); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: HSI2 (HIGH-LEVEL EXPRESSION OF SUGAR-INDUCIBLE GENE 2); transcription factor/ transcription repressor (TAIR:AT2G30470.1); Has 503 Blast hits to 485 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 497; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G21550.1p  transcript_id AT4G21550.1  protein_id AT4G21550.1p  transcript_id AT4G21550.1  
At4g21560	chr4:011469037	0.0	C/11469037-11469666	AT4G21560.1  CDS  gene_syn F17L22.20, VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1, VPS28-1  gene VPS28-1  go_component ESCRT I complex|GO:0000813|17090720|ISS  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1); transporter  note VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1 (VPS28-1); FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: ESCRT I complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated, VPS28, N-terminal (InterPro:IPR017898), Vacuolar protein sorting-associated, VPS28, C-terminal (InterPro:IPR017899), Vacuolar protein sorting-associated, VPS28 (InterPro:IPR007143); BEST Arabidopsis thaliana protein match is: VPS28-2; transporter (TAIR:AT4G05000.2); Has 277 Blast hits to 276 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 114; Fungi - 101; Plants - 39; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT4G21560.1p  transcript_id AT4G21560.1  protein_id AT4G21560.1p  transcript_id AT4G21560.1  
At4g21560	chr4:011469037	0.0	C/11469037-11469666	AT4G21560.2  CDS  gene_syn F17L22.20, VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1, VPS28-1  gene VPS28-1  go_component ESCRT I complex|GO:0000813|17090720|ISS  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1); transporter  note VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1 (VPS28-1); FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: ESCRT I complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated, VPS28, N-terminal (InterPro:IPR017898), Vacuolar protein sorting-associated, VPS28, C-terminal (InterPro:IPR017899), Vacuolar protein sorting-associated, VPS28 (InterPro:IPR007143); BEST Arabidopsis thaliana protein match is: VPS28-2; transporter (TAIR:AT4G05000.2); Has 277 Blast hits to 276 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 114; Fungi - 101; Plants - 39; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT4G21560.2p  transcript_id AT4G21560.2  protein_id AT4G21560.2p  transcript_id AT4G21560.2  
At4g21560	chr4:011469037	0.0	C/11469037-11469666	AT4G21560.3  CDS  gene_syn F17L22.20, VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1, VPS28-1  gene VPS28-1  go_component ESCRT I complex|GO:0000813|17090720|ISS  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1); transporter  note VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1 (VPS28-1); FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: ESCRT I complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated, VPS28, N-terminal (InterPro:IPR017898), Vacuolar protein sorting-associated, VPS28, C-terminal (InterPro:IPR017899), Vacuolar protein sorting-associated, VPS28 (InterPro:IPR007143); BEST Arabidopsis thaliana protein match is: VPS28-2; transporter (TAIR:AT4G05000.2); Has 277 Blast hits to 276 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 114; Fungi - 101; Plants - 39; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT4G21560.3p  transcript_id AT4G21560.3  protein_id AT4G21560.3p  transcript_id AT4G21560.3  
At4g21570	chr4:011472003	0.0	C/11472003-11472269,11471797-11471919,11471420-11471710,11471126-11471329	AT4G21570.1  CDS  gene_syn F17L22.30  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF300 (InterPro:IPR005178); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11200.1); Has 590 Blast hits to 587 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 255; Fungi - 125; Plants - 125; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT4G21570.1p  transcript_id AT4G21570.1  protein_id AT4G21570.1p  transcript_id AT4G21570.1  
At4g21580	chr4:011475822	0.0	W/11475822-11475849,11475949-11476073,11476430-11476609,11476801-11476882,11476961-11477227,11477318-11477514	AT4G21580.2  CDS  gene_syn F17L22.40  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function zinc ion binding|GO:0008270||ISS  product oxidoreductase, zinc-binding dehydrogenase family protein  note oxidoreductase, zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Quinone oxidoreductase putative, PIG3 (InterPro:IPR014189), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: NADP-dependent oxidoreductase, putative (TAIR:AT5G61510.1); Has 27671 Blast hits to 27572 proteins in 1627 species: Archae - 304; Bacteria - 15277; Metazoa - 1310; Fungi - 2464; Plants - 791; Viruses - 0; Other Eukaryotes - 7525 (source: NCBI BLink).  protein_id AT4G21580.2p  transcript_id AT4G21580.2  protein_id AT4G21580.2p  transcript_id AT4G21580.2  
At4g21580	chr4:011475822	0.0	W/11475822-11476073,11476430-11476609,11476801-11476882,11476961-11477227,11477318-11477514	AT4G21580.1  CDS  gene_syn F17L22.40  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function zinc ion binding|GO:0008270||ISS  product oxidoreductase, zinc-binding dehydrogenase family protein  note oxidoreductase, zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Quinone oxidoreductase putative, PIG3 (InterPro:IPR014189), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: NADP-dependent oxidoreductase, putative (TAIR:AT5G61510.1); Has 31612 Blast hits to 31503 proteins in 1766 species: Archae - 322; Bacteria - 16846; Metazoa - 1920; Fungi - 2837; Plants - 1211; Viruses - 0; Other Eukaryotes - 8476 (source: NCBI BLink).  protein_id AT4G21580.1p  transcript_id AT4G21580.1  protein_id AT4G21580.1p  transcript_id AT4G21580.1  
At4g21580	chr4:011475822	0.0	W/11475822-11476073,11476430-11476609,11476801-11476882,11476979-11477227,11477318-11477514	AT4G21580.3  CDS  gene_syn F17L22.40  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function zinc ion binding|GO:0008270||ISS  product oxidoreductase, zinc-binding dehydrogenase family protein  note oxidoreductase, zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Quinone oxidoreductase putative, PIG3 (InterPro:IPR014189), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: NADP-dependent oxidoreductase, putative (TAIR:AT5G61510.1); Has 28426 Blast hits to 28317 proteins in 1711 species: Archae - 305; Bacteria - 15546; Metazoa - 1723; Fungi - 2576; Plants - 1016; Viruses - 0; Other Eukaryotes - 7260 (source: NCBI BLink).  protein_id AT4G21580.3p  transcript_id AT4G21580.3  protein_id AT4G21580.3p  transcript_id AT4G21580.3  
At4g21585	chr4:011477988	0.0	W/11477988-11478101,11478359-11478539,11478618-11478728,11478817-11478872,11478946-11479029,11479114-11479206,11479304-11479371,11479585-11479658,11479835-11479953	AT4G21585.1  CDS  gene_syn ENDO4, endonuclease 4  gene ENDO4  function Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro.  go_component endomembrane system|GO:0012505||IEA  go_process DNA catabolic process|GO:0006308||IEA  go_process DNA catabolic process|GO:0006308||ISS  go_function single-stranded DNA specific endodeoxyribonuclease activity|GO:0000014|17651368|IDA  go_function nucleic acid binding|GO:0003676||ISS  go_function endonuclease activity|GO:0004519||ISS  go_function T/G mismatch-specific endonuclease activity|GO:0043765|17651368|IDA  product ENDO4 (endonuclease 4); T/G mismatch-specific endonuclease/ endonuclease/ nucleic acid binding / single-stranded DNA specific endodeoxyribonuclease  note endonuclease 4 (ENDO4); FUNCTIONS IN: T/G mismatch-specific endonuclease activity, single-stranded DNA specific endodeoxyribonuclease activity, nucleic acid binding, endonuclease activity; INVOLVED IN: DNA catabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Phospholipase C/P1 nuclease, core (InterPro:IPR008947), S1/P1 nuclease (InterPro:IPR003154); BEST Arabidopsis thaliana protein match is: ENDO5 (endonuclease 5); T/G mismatch-specific endonuclease/ endonuclease/ nucleic acid binding / single-stranded DNA specific endodeoxyribonuclease (TAIR:AT4G21600.1); Has 596 Blast hits to 593 proteins in 153 species: Archae - 0; Bacteria - 137; Metazoa - 0; Fungi - 68; Plants - 78; Viruses - 0; Other Eukaryotes - 313 (source: NCBI BLink).  protein_id AT4G21585.1p  transcript_id AT4G21585.1  protein_id AT4G21585.1p  transcript_id AT4G21585.1  
At4g21590	chr4:011480524	0.0	W/11480524-11480637,11480905-11481085,11481181-11481276,11481371-11481426,11481595-11481678,11481832-11481924,11482018-11482085,11482264-11482337,11482456-11482574	AT4G21590.1  CDS  gene_syn ENDO3, F17L22.50, endonuclease 3  gene ENDO3  function Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed in the floral meristem and during stamen development.  go_component endomembrane system|GO:0012505||IEA  go_process DNA catabolic process|GO:0006308||ISS  go_process stamen development|GO:0048443|15634696|IDA  go_function single-stranded DNA specific endodeoxyribonuclease activity|GO:0000014|17651368|IDA  go_function nucleic acid binding|GO:0003676||ISS  go_function endonuclease activity|GO:0004519||ISS  go_function T/G mismatch-specific endonuclease activity|GO:0043765|17651368|IDA  product ENDO3 (endonuclease 3); T/G mismatch-specific endonuclease/ endonuclease/ nucleic acid binding / single-stranded DNA specific endodeoxyribonuclease  note endonuclease 3 (ENDO3); FUNCTIONS IN: T/G mismatch-specific endonuclease activity, single-stranded DNA specific endodeoxyribonuclease activity, nucleic acid binding, endonuclease activity; INVOLVED IN: stamen development, DNA catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C/P1 nuclease, core (InterPro:IPR008947), S1/P1 nuclease (InterPro:IPR003154); BEST Arabidopsis thaliana protein match is: ENDO5 (endonuclease 5); T/G mismatch-specific endonuclease/ endonuclease/ nucleic acid binding / single-stranded DNA specific endodeoxyribonuclease (TAIR:AT4G21600.1); Has 593 Blast hits to 590 proteins in 154 species: Archae - 0; Bacteria - 139; Metazoa - 0; Fungi - 68; Plants - 78; Viruses - 4; Other Eukaryotes - 304 (source: NCBI BLink).  protein_id AT4G21590.1p  transcript_id AT4G21590.1  protein_id AT4G21590.1p  transcript_id AT4G21590.1  
At4g21590	chr4:011480524	0.0	W/11480524-11480637,11480905-11481085,11481181-11481276,11481371-11481426,11481595-11481678,11481832-11481924,11482018-11482085,11482264-11482337,11482456-11482574	AT4G21590.2  CDS  gene_syn ENDO3, F17L22.50, endonuclease 3  gene ENDO3  function Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed in the floral meristem and during stamen development.  go_component endomembrane system|GO:0012505||IEA  go_process DNA catabolic process|GO:0006308||ISS  go_process stamen development|GO:0048443|15634696|IDA  go_function single-stranded DNA specific endodeoxyribonuclease activity|GO:0000014|17651368|IDA  go_function nucleic acid binding|GO:0003676||ISS  go_function endonuclease activity|GO:0004519||ISS  go_function T/G mismatch-specific endonuclease activity|GO:0043765|17651368|IDA  product ENDO3 (endonuclease 3); T/G mismatch-specific endonuclease/ endonuclease/ nucleic acid binding / single-stranded DNA specific endodeoxyribonuclease  note endonuclease 3 (ENDO3); FUNCTIONS IN: T/G mismatch-specific endonuclease activity, single-stranded DNA specific endodeoxyribonuclease activity, nucleic acid binding, endonuclease activity; INVOLVED IN: stamen development, DNA catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C/P1 nuclease, core (InterPro:IPR008947), S1/P1 nuclease (InterPro:IPR003154); BEST Arabidopsis thaliana protein match is: ENDO5 (endonuclease 5); T/G mismatch-specific endonuclease/ endonuclease/ nucleic acid binding / single-stranded DNA specific endodeoxyribonuclease (TAIR:AT4G21600.1); Has 593 Blast hits to 590 proteins in 154 species: Archae - 0; Bacteria - 139; Metazoa - 0; Fungi - 68; Plants - 78; Viruses - 4; Other Eukaryotes - 304 (source: NCBI BLink).  protein_id AT4G21590.2p  transcript_id AT4G21590.2  protein_id AT4G21590.2p  transcript_id AT4G21590.2  
At4g21595	chr4:011482879	0.0	C/11482879-11483257	AT4G21595.1  miRNA  gene_syn MICRORNA169G, MIR169G  gene MIR169G  function Encodes a microRNA that targets several HAP2 family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGAGCCAAGGAUGACUUGCCG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR169G (MICRORNA169G); miRNA  transcript_id AT4G21595.1  
At4g21600	chr4:011485319	0.0	W/11485319-11485420,11485680-11485863,11485971-11486081,11486202-11486257,11486429-11486512,11486593-11486685,11486788-11486855,11486960-11487033,11487117-11487235	AT4G21600.1  CDS  gene_syn ENDO5, F17L22.60, endonuclease 5  gene ENDO5  function Encodes a protein with mismatch-specific endonuclease activity with a preference for T/G, A/G, and G/G of single base mismatches. It also has the ability to cleave indel types of mismatches (heteroduplexes with loops).  go_component endomembrane system|GO:0012505||IEA  go_process DNA catabolic process|GO:0006308||IEA  go_process DNA catabolic process|GO:0006308||ISS  go_function single-stranded DNA specific endodeoxyribonuclease activity|GO:0000014|17651368|IDA  go_function nucleic acid binding|GO:0003676||ISS  go_function endonuclease activity|GO:0004519||ISS  go_function T/G mismatch-specific endonuclease activity|GO:0043765|17651368|IDA  product ENDO5 (endonuclease 5); T/G mismatch-specific endonuclease/ endonuclease/ nucleic acid binding / single-stranded DNA specific endodeoxyribonuclease  note endonuclease 5 (ENDO5); FUNCTIONS IN: T/G mismatch-specific endonuclease activity, single-stranded DNA specific endodeoxyribonuclease activity, nucleic acid binding, endonuclease activity; INVOLVED IN: DNA catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Phospholipase C/P1 nuclease, core (InterPro:IPR008947), S1/P1 nuclease (InterPro:IPR003154); BEST Arabidopsis thaliana protein match is: ENDO4 (endonuclease 4); T/G mismatch-specific endonuclease/ endonuclease/ nucleic acid binding / single-stranded DNA specific endodeoxyribonuclease (TAIR:AT4G21585.1); Has 581 Blast hits to 578 proteins in 151 species: Archae - 0; Bacteria - 137; Metazoa - 0; Fungi - 68; Plants - 78; Viruses - 4; Other Eukaryotes - 294 (source: NCBI BLink).  protein_id AT4G21600.1p  transcript_id AT4G21600.1  protein_id AT4G21600.1p  transcript_id AT4G21600.1  
At4g21605	chr4:011487646	0.0	W/11487646-11488821	AT4G21605.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At4g21610	chr4:011489069	0.0	W/11489069-11489237,11489420-11489527,11489986-11490095,11490220-11490300	AT4G21610.1  CDS  gene_syn F18E5.230, F18E5_230, LOL2, LSD ONE LIKE 2  gene LOL2  function Contains the same novel zinc finger motif with LSD1, a negative regulator of cell death and defense response. Due to differential splicing, it encodes two different proteins, one of which contains an additional, putative DNA binding motif. Northern analysis demonstrated that LOL2 transcripts containing the additional DNA binding motif are predominantly upregulated after treatment with both virulent and avirulent Pseudomonas syringae pv maculicola strains.  go_component cellular_component|GO:0005575||ND  go_process response to bacterium|GO:0009617|12732715|IEP  go_function transcription factor activity|GO:0003700||ISS  product LOL2 (LSD ONE LIKE 2); transcription factor  note LSD ONE LIKE 2 (LOL2); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to bacterium; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: LOL1 (LSD ONE LIKE 1); DNA binding (TAIR:AT1G32540.3); Has 178 Blast hits to 123 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 147; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT4G21610.1p  transcript_id AT4G21610.1  protein_id AT4G21610.1p  transcript_id AT4G21610.1  
At4g21620	chr4:011491519	0.0	W/11491519-11491914	AT4G21620.1  CDS  gene_syn F17L22.80, F17L22_80  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61255.1); Has 5875 Blast hits to 3191 proteins in 401 species: Archae - 1; Bacteria - 936; Metazoa - 2612; Fungi - 297; Plants - 1519; Viruses - 48; Other Eukaryotes - 462 (source: NCBI BLink).  protein_id AT4G21620.1p  transcript_id AT4G21620.1  protein_id AT4G21620.1p  transcript_id AT4G21620.1  
At4g21630	chr4:011495387	0.0	C/11495387-11495500,11495195-11495286,11494832-11494968,11494574-11494753,11494195-11494491,11493708-11494084,11493357-11493613,11493153-11493267,11492869-11493061,11492248-11492804	AT4G21630.1  CDS  gene_syn F17L22.90, F17L22_90  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product subtilase family protein  note subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: plant-type cell wall; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT4G21650.1); Has 3933 Blast hits to 3616 proteins in 643 species: Archae - 118; Bacteria - 2222; Metazoa - 32; Fungi - 146; Plants - 900; Viruses - 0; Other Eukaryotes - 515 (source: NCBI BLink).  protein_id AT4G21630.1p  transcript_id AT4G21630.1  protein_id AT4G21630.1p  transcript_id AT4G21630.1  
At4g21640	chr4:011500499	0.0	C/11500499-11500618,11500301-11500392,11499889-11499986,11499613-11499798,11499210-11499506,11498720-11499090,11498364-11498536,11498152-11498266,11497463-11497655,11496834-11497390	AT4G21640.1  CDS  gene_syn F17L22.100, F17L22_100  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product subtilase family protein  note subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT4G21630.1); Has 3606 Blast hits to 3240 proteins in 590 species: Archae - 90; Bacteria - 1912; Metazoa - 66; Fungi - 119; Plants - 1003; Viruses - 0; Other Eukaryotes - 416 (source: NCBI BLink).  protein_id AT4G21640.1p  transcript_id AT4G21640.1  protein_id AT4G21640.1p  transcript_id AT4G21640.1  
At4g21650	chr4:011504537	0.0	C/11504537-11504656,11504349-11504440,11503934-11504031,11503659-11503838,11503284-11503580,11502771-11503162,11502428-11502684,11502232-11502346,11501941-11502133,11501314-11501870	AT4G21650.1  CDS  gene_syn F17L22.110, F17L22_110  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product subtilase family protein  note subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT4G21630.1); Has 4532 Blast hits to 3933 proteins in 710 species: Archae - 129; Bacteria - 2684; Metazoa - 30; Fungi - 172; Plants - 917; Viruses - 0; Other Eukaryotes - 600 (source: NCBI BLink).  protein_id AT4G21650.1p  transcript_id AT4G21650.1  protein_id AT4G21650.1p  transcript_id AT4G21650.1  
At4g21660	chr4:011509551	0.0	C/11509551-11509772,11509179-11509430,11509031-11509093,11508827-11508934,11508309-11508386,11508133-11508225,11507955-11508041,11507751-11507852,11507554-11507673,11507393-11507455,11507091-11507233,11506906-11506987,11506684-11506788,11506433-11506594,11506259-11506333	AT4G21660.1  CDS  gene_syn F17L22.120, F17L22_120  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process mRNA processing|GO:0006397||IEA  go_process mRNA processing|GO:0006397||ISS  product proline-rich spliceosome-associated (PSP) family protein  note proline-rich spliceosome-associated (PSP) family protein; INVOLVED IN: mRNA processing; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: PSP, proline-rich (InterPro:IPR006568), Protein of unknown function DUF382 (InterPro:IPR007180); BEST Arabidopsis thaliana protein match is: pliceosome associated protein-related (TAIR:AT1G11520.1); Has 12288 Blast hits to 5916 proteins in 388 species: Archae - 20; Bacteria - 224; Metazoa - 7139; Fungi - 832; Plants - 388; Viruses - 239; Other Eukaryotes - 3446 (source: NCBI BLink).  protein_id AT4G21660.1p  transcript_id AT4G21660.1  protein_id AT4G21660.1p  transcript_id AT4G21660.1  
At4g21670	chr4:011511511	0.0	W/11511511-11511828,11512067-11512543,11512771-11512981,11513061-11513218,11513489-11513556,11513667-11513772,11513899-11513982,11514122-11514727,11514828-11514891,11514975-11515105,11515179-11515232,11515379-11515475,11515934-11516148,11516252-11516338,11516535-11516600,11516675-11516748,11516835-11516922	AT4G21670.1  CDS  gene_syn ATCPL1, ATCPL2, C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1, CPL1, F17L22.130, F17L22_130, FIERY 2, FRY2  gene CPL1  function encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl.  go_component intracellular|GO:0005622||IEA  go_process response to abiotic stimulus|GO:0009628|12149434|IMP  go_process abscisic acid mediated signaling|GO:0009738|12149434|IMP  go_process negative regulation of transcription|GO:0016481|12149434|IMP  go_function double-stranded RNA binding|GO:0003725||ISS  go_function phosphatase activity|GO:0016791|18506580|IDA  go_function nucleotide phosphatase activity|GO:0019204|12149434|IDA  product CPL1 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1); double-stranded RNA binding / nucleotide phosphatase  note C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1 (CPL1); FUNCTIONS IN: double-stranded RNA binding, nucleotide phosphatase activity; INVOLVED IN: abscisic acid mediated signaling, negative regulation of transcription, response to abiotic stimulus; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Double-stranded RNA binding (InterPro:IPR001159), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: CPL2; double-stranded RNA binding / phosphatase (TAIR:AT5G01270.1); Has 226 Blast hits to 216 proteins in 69 species: Archae - 0; Bacteria - 21; Metazoa - 56; Fungi - 48; Plants - 53; Viruses - 1; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT4G21670.1p  transcript_id AT4G21670.1  protein_id AT4G21670.1p  transcript_id AT4G21670.1  
At4g21680	chr4:011519459	0.0	C/11519459-11519576,11519141-11519358,11518506-11519059,11517540-11518419	AT4G21680.1  CDS  gene_syn F17L22.140, F17L22_140  go_component plasma membrane|GO:0005886|17317660|IDA  go_process oligopeptide transport|GO:0006857||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: NRT1.5 (NITRATE TRANSPORTER 1.5); nitrate transmembrane transporter/ transporter (TAIR:AT1G32450.1); Has 4432 Blast hits to 4098 proteins in 778 species: Archae - 0; Bacteria - 1814; Metazoa - 698; Fungi - 270; Plants - 1136; Viruses - 0; Other Eukaryotes - 514 (source: NCBI BLink).  protein_id AT4G21680.1p  transcript_id AT4G21680.1  protein_id AT4G21680.1p  transcript_id AT4G21680.1  
At4g21690	chr4:011527229	0.0	W/11527229-11527692,11527950-11528209,11528735-11529060	AT4G21690.1  CDS  gene_syn ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, ATGA3OX3, F17L22.150, F17L22_150, GA3OX3, GIBBERELLIN 3-OXIDASE 3  gene GA3OX3  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  product GA3OX3 (GIBBERELLIN 3-OXIDASE 3); iron ion binding / oxidoreductase  note GIBBERELLIN 3-OXIDASE 3 (GA3OX3); FUNCTIONS IN: oxidoreductase activity, iron ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, anther, flower, terminal floral bud; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: GA3OX1 (GIBBERELLIN 3-OXIDASE 1); gibberellin 3-beta-dioxygenase/ transcription factor binding (TAIR:AT1G15550.1); Has 5449 Blast hits to 5431 proteins in 676 species: Archae - 0; Bacteria - 698; Metazoa - 88; Fungi - 510; Plants - 3037; Viruses - 0; Other Eukaryotes - 1116 (source: NCBI BLink).  protein_id AT4G21690.1p  transcript_id AT4G21690.1  protein_id AT4G21690.1p  transcript_id AT4G21690.1  
At4g21700	chr4:011529956	0.0	W/11529956-11532844	AT4G21700.1  CDS  gene_syn F17L22.160, F17L22_160  go_component chloroplast|GO:0009507|15028209|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52780.1); Has 56 Blast hits to 47 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G21700.1p  transcript_id AT4G21700.1  protein_id AT4G21700.1p  transcript_id AT4G21700.1  
At4g21705	chr4:011534584	0.0	C/11534584-11534817,11533257-11534501	AT4G21705.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G20710.1); Has 4515 Blast hits to 2311 proteins in 81 species: Archae - 0; Bacteria - 5; Metazoa - 25; Fungi - 23; Plants - 4304; Viruses - 0; Other Eukaryotes - 158 (source: NCBI BLink).  protein_id AT4G21705.1p  transcript_id AT4G21705.1  protein_id AT4G21705.1p  transcript_id AT4G21705.1  
At4g21710	chr4:011541952	0.0	C/11541952-11542200,11540954-11541175,11540561-11540851,11540253-11540450,11540097-11540161,11539907-11539993,11539709-11539829,11539569-11539613,11539339-11539476,11539133-11539205,11538891-11538967,11538705-11538812,11538502-11538618,11538254-11538409,11538068-11538172,11537859-11537984,11537688-11537765,11537499-11537594,11537294-11537409,11537149-11537218,11537014-11537067,11536770-11536913,11536383-11536682,11535883-11536305,11535684-11535791	AT4G21710.1  CDS  gene_syn EMB1989, EMBRYO DEFECTIVE 1989, F17L22.170, F17L22_170, NRPB2, RPB2  gene NRPB2  function Encodes the unique second-largest subunit of DNA-dependent RNA polymerase II; the ortholog of budding yeast RPB2 and a homolog of the E. coli RNA polymerase beta subunit.  go_component DNA-directed RNA polymerase II, core complex|GO:0005665|19110459|IPI  go_component DNA-directed RNA polymerase II, holoenzyme|GO:0016591|10908634|ISS  go_process transcription|GO:0006350||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899|10908634|ISS  product NRPB2; DNA binding / DNA-directed RNA polymerase  note NRPB2; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: embryonic development ending in seed dormancy, transcription; LOCATED IN: DNA-directed RNA polymerase II, core complex, DNA-directed RNA polymerase II, holoenzyme; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, subunit 2, domain 6 (InterPro:IPR007120), RNA polymerase Rpb2, domain 7 (InterPro:IPR007641), RNA polymerase, beta subunit, protrusion (InterPro:IPR007644), RNA polymerase Rpb2, domain 3 (InterPro:IPR007645), DNA-directed RNA polymerase, subunit 2 (InterPro:IPR015712), RNA polymerase Rpb2, domain 2 (InterPro:IPR007642), RNA polymerase Rpb2, domain 4 (InterPro:IPR007646), RNA polymerase, beta subunit, conserved site (InterPro:IPR007121), RNA polymerase Rpb2, domain 5 (InterPro:IPR007647); BEST Arabidopsis thaliana protein match is: NRPC2; DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding (TAIR:AT5G45140.1); Has 26636 Blast hits to 20676 proteins in 6259 species: Archae - 270; Bacteria - 10530; Metazoa - 417; Fungi - 4903; Plants - 2387; Viruses - 204; Other Eukaryotes - 7925 (source: NCBI BLink).  protein_id AT4G21710.1p  transcript_id AT4G21710.1  protein_id AT4G21710.1p  transcript_id AT4G21710.1  
At4g21720	chr4:011542561	0.0	W/11542561-11542636,11543533-11543586,11543796-11543899,11543992-11544030,11544128-11544274	AT4G21720.1  CDS  gene_syn F17L22.180, F17L22_180  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, male gametophyte, sepal, flower, root; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; Has 2343 Blast hits to 913 proteins in 168 species: Archae - 4; Bacteria - 264; Metazoa - 752; Fungi - 93; Plants - 830; Viruses - 97; Other Eukaryotes - 303 (source: NCBI BLink).  protein_id AT4G21720.1p  transcript_id AT4G21720.1  protein_id AT4G21720.1p  transcript_id AT4G21720.1  
At4g21730	chr4:011544933	0.0	W/11544933-11545527	AT4G21730.1  pseudogenic_transcript  pseudo  gene_syn F17L22.190, F17L22_190  function pseudogene of N-ethylmaleimide sensitive factor (NSF)  note expressed protein  
At4g21740	chr4:011545926	0.0	W/11545926-11546396	AT4G21740.1  CDS  gene_syn F17L22.200, F17L22_200  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G21740.1p  transcript_id AT4G21740.1  protein_id AT4G21740.1p  transcript_id AT4G21740.1  
At4g21745	chr4:011549340	0.0	W/11549340-11549391,11549708-11549802,11549992-11550094,11550195-11550415	AT4G21745.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095); BEST Arabidopsis thaliana protein match is: RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10) (TAIR:AT4G04900.1); Has 64 Blast hits to 64 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G21745.1p  transcript_id AT4G21745.1  protein_id AT4G21745.1p  transcript_id AT4G21745.1  
At4g21750	chr4:011556965	0.0	W/11556965-11557200,11557292-11557409,11557712-11558368,11558460-11558561,11558672-11558872,11558969-11559143,11559272-11559543,11559626-11559721,11559812-11560243	AT4G21750.1  CDS  gene_syn ATML1, F17L22.210, F17L22_210, MERISTEM LAYER 1  gene ATML1  function Encodes a homeobox protein similar to GL2. It is expressed in both the apical and basal daughter cells of the zygote as well as their progeny. Expression is detected starting the two-celled stage of embryo development and is later restricted to the outermost, epidermal cell layer from its inception. Its promoter is highly modular with each region contributing to specific aspects of the gene s spatial and temporal expression. Double mutant analysis with PDF2, another L1-specific gene, suggests that their functions are partially redundant and the absence of both of the genes result in abnormal shoot development.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process epidermal cell differentiation|GO:0009913|12505995|IGI  go_process cotyledon development|GO:0048825|16778018|IGI  go_function DNA binding|GO:0003677|8989876|ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|8989876|ISS  go_function sequence-specific DNA binding|GO:0043565|11439135|IDA  product ATML1 (MERISTEM LAYER 1); DNA binding / sequence-specific DNA binding / transcription factor  note MERISTEM LAYER 1 (ATML1); FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding, DNA binding; INVOLVED IN: epidermal cell differentiation, cotyledon development, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: PDF2 (PROTODERMAL FACTOR 2); DNA binding / transcription factor (TAIR:AT4G04890.1); Has 8223 Blast hits to 8187 proteins in 429 species: Archae - 0; Bacteria - 6; Metazoa - 6376; Fungi - 177; Plants - 1505; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT4G21750.1p  transcript_id AT4G21750.1  protein_id AT4G21750.1p  transcript_id AT4G21750.1  
At4g21750	chr4:011556965	0.0	W/11556965-11557200,11557292-11557409,11557712-11558368,11558460-11558561,11558672-11558872,11558969-11559143,11559272-11559543,11559626-11559721,11559812-11560243	AT4G21750.2  CDS  gene_syn ATML1, F17L22.210, F17L22_210, MERISTEM LAYER 1  gene ATML1  function Encodes a homeobox protein similar to GL2. It is expressed in both the apical and basal daughter cells of the zygote as well as their progeny. Expression is detected starting the two-celled stage of embryo development and is later restricted to the outermost, epidermal cell layer from its inception. Its promoter is highly modular with each region contributing to specific aspects of the gene s spatial and temporal expression. Double mutant analysis with PDF2, another L1-specific gene, suggests that their functions are partially redundant and the absence of both of the genes result in abnormal shoot development.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process epidermal cell differentiation|GO:0009913|12505995|IGI  go_process cotyledon development|GO:0048825|16778018|IGI  go_function DNA binding|GO:0003677|8989876|ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|8989876|ISS  go_function sequence-specific DNA binding|GO:0043565|11439135|IDA  product ATML1 (MERISTEM LAYER 1); DNA binding / sequence-specific DNA binding / transcription factor  note MERISTEM LAYER 1 (ATML1); FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding, DNA binding; INVOLVED IN: epidermal cell differentiation, cotyledon development, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: PDF2 (PROTODERMAL FACTOR 2); DNA binding / transcription factor (TAIR:AT4G04890.1); Has 8223 Blast hits to 8187 proteins in 429 species: Archae - 0; Bacteria - 6; Metazoa - 6376; Fungi - 177; Plants - 1505; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT4G21750.2p  transcript_id AT4G21750.2  protein_id AT4G21750.2p  transcript_id AT4G21750.2  
At4g21760	chr4:011561229	0.0	W/11561229-11561447,11561546-11561612,11561757-11561815,11561917-11561992,11562071-11562145,11562225-11562312,11562402-11562654,11562767-11562882,11562968-11563227,11563333-11563401,11563472-11563565,11563640-11563871	AT4G21760.1  CDS  gene_syn BGLU47, Beta-glucosidase 47, F17L22.220, F17L22_220  gene BGLU47  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU47 (Beta-glucosidase 47); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note Beta-glucosidase 47 (BGLU47); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU45 (BETA-GLUCOSIDASE 45); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G61810.1); Has 5761 Blast hits to 5522 proteins in 800 species: Archae - 100; Bacteria - 3130; Metazoa - 607; Fungi - 133; Plants - 837; Viruses - 0; Other Eukaryotes - 954 (source: NCBI BLink).  protein_id AT4G21760.1p  transcript_id AT4G21760.1  protein_id AT4G21760.1p  transcript_id AT4G21760.1  
At4g21770	chr4:011566131	0.0	C/11566131-11566345,11565922-11566053,11565580-11565834,11565415-11565496,11565025-11565140,11564879-11564933,11564667-11564778,11564398-11564567,11564028-11564309	AT4G21770.1  CDS  gene_syn F17L22.230, F17L22_230  go_component chloroplast|GO:0009507||IEA  go_process pseudouridine synthesis|GO:0001522||IEA  go_function pseudouridine synthase activity|GO:0009982|18599582|TAS  go_function pseudouridine synthase activity|GO:0009982||ISS  product pseudouridine synthase family protein  note pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase (InterPro:IPR006145); Has 3501 Blast hits to 3501 proteins in 938 species: Archae - 0; Bacteria - 2264; Metazoa - 104; Fungi - 46; Plants - 34; Viruses - 0; Other Eukaryotes - 1053 (source: NCBI BLink).  protein_id AT4G21770.1p  transcript_id AT4G21770.1  protein_id AT4G21770.1p  transcript_id AT4G21770.1  
At4g21780	chr4:011567213	0.0	W/11567213-11567560	AT4G21780.1  CDS  gene_syn F17L22.240, F17L22_240  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; Has 15 Blast hits to 15 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G21780.1p  transcript_id AT4G21780.1  protein_id AT4G21780.1p  transcript_id AT4G21780.1  
At4g21790	chr4:011569924	0.0	W/11569924-11570082,11570389-11570479,11570581-11570633,11570743-11570835,11570927-11570998,11571265-11571337,11571457-11571502,11571609-11571672,11571780-11571833,11571920-11571997,11572071-11572163	AT4G21790.1  CDS  gene_syn ATTOM1, F17L22.250, F17L22_250, TOBAMOVIRUS MULTIPLICATION 1, TOM1  gene TOM1  function encodes a host factor that is required for TMV virus multiplication.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component vacuolar membrane|GO:0005774|12514140|IDA  go_process viral replication complex formation and maintenance|GO:0046786|8350399|IMP  go_function protein binding|GO:0005515|10944200|IPI  product TOM1 (TOBAMOVIRUS MULTIPLICATION 1); protein binding  note TOBAMOVIRUS MULTIPLICATION 1 (TOM1); FUNCTIONS IN: protein binding; INVOLVED IN: viral replication complex formation and maintenance; LOCATED IN: vacuolar membrane, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana protein match is: TOM3; protein binding (TAIR:AT2G02180.1); Has 167 Blast hits to 167 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT4G21790.1p  transcript_id AT4G21790.1  protein_id AT4G21790.1p  transcript_id AT4G21790.1  
At4g21800	chr4:011573289	0.0	W/11573289-11573318,11573495-11573615,11573715-11573941,11574051-11574341,11574429-11574634,11574712-11574976	AT4G21800.1  CDS  gene_syn F17L22.260, F17L22_260, QQT2, quatre-quart2  gene QQT2  function Encodes QQT2. Required for early embryo development. qqt1 mutant lines are embryo-defective. Participates in the organization of microtubules during cell division. Interacts with QQT1 (encoded by AT5G22370).  go_function nucleotide binding|GO:0000166||IEA  go_component microtubule|GO:0005874|17419841|IDA  go_process embryonic development|GO:0009790|17419841|IMP  go_process cell division|GO:0051301|17419841|IMP  go_function ATP binding|GO:0005524||ISS  product QQT2 (quatre-quart2); ATP binding / nucleotide binding  note quatre-quart2 (QQT2); FUNCTIONS IN: nucleotide binding, ATP binding; INVOLVED IN: embryonic development, cell division; LOCATED IN: microtubule; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function, ATP binding (InterPro:IPR004130); BEST Arabidopsis thaliana protein match is: QQT1 (QUATRE-QUART 1); ATP binding / nucleotide binding (TAIR:AT5G22370.2); Has 1635 Blast hits to 1573 proteins in 220 species: Archae - 81; Bacteria - 20; Metazoa - 547; Fungi - 338; Plants - 122; Viruses - 23; Other Eukaryotes - 504 (source: NCBI BLink).  protein_id AT4G21800.1p  transcript_id AT4G21800.1  protein_id AT4G21800.1p  transcript_id AT4G21800.1  
At4g21800	chr4:011573289	0.0	W/11573289-11573318,11573495-11573615,11573715-11573941,11574051-11574341,11574429-11574634,11574712-11574976	AT4G21800.2  CDS  gene_syn F17L22.260, F17L22_260, QQT2, quatre-quart2  gene QQT2  function Encodes QQT2. Required for early embryo development. qqt1 mutant lines are embryo-defective. Participates in the organization of microtubules during cell division. Interacts with QQT1 (encoded by AT5G22370).  go_function nucleotide binding|GO:0000166||IEA  go_component microtubule|GO:0005874|17419841|IDA  go_process embryonic development|GO:0009790|17419841|IMP  go_process cell division|GO:0051301|17419841|IMP  go_function ATP binding|GO:0005524||ISS  product QQT2 (quatre-quart2); ATP binding / nucleotide binding  note quatre-quart2 (QQT2); FUNCTIONS IN: nucleotide binding, ATP binding; INVOLVED IN: embryonic development, cell division; LOCATED IN: microtubule; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function, ATP binding (InterPro:IPR004130); BEST Arabidopsis thaliana protein match is: QQT1 (QUATRE-QUART 1); ATP binding / nucleotide binding (TAIR:AT5G22370.2); Has 1635 Blast hits to 1573 proteins in 220 species: Archae - 81; Bacteria - 20; Metazoa - 547; Fungi - 338; Plants - 122; Viruses - 23; Other Eukaryotes - 504 (source: NCBI BLink).  protein_id AT4G21800.2p  transcript_id AT4G21800.2  protein_id AT4G21800.2p  transcript_id AT4G21800.2  
At4g21810	chr4:011576905	0.0	C/11576905-11577003,11576564-11576663,11575945-11576159,11575764-11575847,11575620-11575673,11575345-11575527	AT4G21810.1  CDS  gene_syn DER2.1, DERLIN-2.1, T8O5.20, T8O5_20  gene DER2.1  go_component cellular_component|GO:0005575||ND  go_process proteolysis|GO:0006508||ISS  go_function molecular_function|GO:0003674||ND  product DER2.1 (DERLIN-2.1)  note DERLIN-2.1 (DER2.1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Der1-like (InterPro:IPR007599); BEST Arabidopsis thaliana protein match is: DER2.2 (DERLIN-2.2) (TAIR:AT4G04860.1); Has 644 Blast hits to 643 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 293; Fungi - 119; Plants - 95; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).  protein_id AT4G21810.1p  transcript_id AT4G21810.1  protein_id AT4G21810.1p  transcript_id AT4G21810.1  
At4g21820	chr4:011577558	0.0	W/11577558-11578265,11578358-11578826,11578913-11578998,11579099-11579212,11579309-11579497,11579596-11579661,11579847-11579900,11580268-11580384,11580592-11580690,11580747-11580927,11581135-11581272,11581474-11581668,11581750-11582030,11582328-11582505,11582620-11582852,11582953-11583142,11583209-11583434,11583517-11583672,11583784-11583871	AT4G21820.1  CDS  gene_syn T8O5.30, T8O5_30  go_component chloroplast|GO:0009507||IEA  go_function binding|GO:0005488||IEA  go_function calmodulin binding|GO:0005516||ISS  product binding / calmodulin binding  note binding / calmodulin binding; FUNCTIONS IN: calmodulin binding, binding; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: XIB (MYOSIN XI B); motor (TAIR:AT1G04160.1); Has 1076 Blast hits to 431 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 966; Fungi - 22; Plants - 62; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT4G21820.1p  transcript_id AT4G21820.1  protein_id AT4G21820.1p  transcript_id AT4G21820.1  
At4g21830	chr4:011585138	0.0	C/11585138-11585247,11584882-11585038,11584565-11584723	AT4G21830.2  CDS  gene_syn T8O5.40, T8O5_40  go_function peptide-methionine-(S)-S-oxide reductase activity|GO:0008113||IEA  go_component cellular_component|GO:0005575||ND  go_process response to singlet oxygen|GO:0000304|17075038|IEP  product methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein  note methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein; FUNCTIONS IN: peptide-methionine-(S)-S-oxide reductase activity; INVOLVED IN: response to singlet oxygen; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Methionine sulphoxide reductase B (InterPro:IPR002579), Mss4-like (InterPro:IPR011057); BEST Arabidopsis thaliana protein match is: methionine sulfoxide reductase domain-containing protein / SelR domain-containing protein (TAIR:AT4G21840.1); Has 5883 Blast hits to 5882 proteins in 1229 species: Archae - 51; Bacteria - 2686; Metazoa - 217; Fungi - 85; Plants - 108; Viruses - 1; Other Eukaryotes - 2735 (source: NCBI BLink).  protein_id AT4G21830.2p  transcript_id AT4G21830.2  protein_id AT4G21830.2p  transcript_id AT4G21830.2  
At4g21830	chr4:011585138	0.0	C/11585138-11585256,11584882-11585038,11584565-11584723	AT4G21830.1  CDS  gene_syn T8O5.40, T8O5_40  go_function peptide-methionine-(S)-S-oxide reductase activity|GO:0008113||IEA  go_component cellular_component|GO:0005575||ND  go_process response to singlet oxygen|GO:0000304|17075038|IEP  product methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein  note methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein; FUNCTIONS IN: peptide-methionine-(S)-S-oxide reductase activity; INVOLVED IN: response to singlet oxygen; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Methionine sulphoxide reductase B (InterPro:IPR002579), Mss4-like (InterPro:IPR011057); BEST Arabidopsis thaliana protein match is: methionine sulfoxide reductase domain-containing protein / SelR domain-containing protein (TAIR:AT4G21840.1); Has 5883 Blast hits to 5882 proteins in 1229 species: Archae - 51; Bacteria - 2686; Metazoa - 217; Fungi - 85; Plants - 108; Viruses - 1; Other Eukaryotes - 2735 (source: NCBI BLink).  protein_id AT4G21830.1p  transcript_id AT4G21830.1  protein_id AT4G21830.1p  transcript_id AT4G21830.1  
At4g21840	chr4:011588063	0.0	C/11588063-11588178,11587812-11587968,11587231-11587389	AT4G21840.1  CDS  gene_syn T8O5.50, T8O5_50  go_function peptide-methionine-(S)-S-oxide reductase activity|GO:0008113||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product methionine sulfoxide reductase domain-containing protein / SelR domain-containing protein  note methionine sulfoxide reductase domain-containing protein / SelR domain-containing protein; FUNCTIONS IN: peptide-methionine-(S)-S-oxide reductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Methionine sulphoxide reductase B (InterPro:IPR002579), Mss4-like (InterPro:IPR011057); BEST Arabidopsis thaliana protein match is: methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein (TAIR:AT4G21830.1); Has 5883 Blast hits to 5882 proteins in 1229 species: Archae - 51; Bacteria - 2686; Metazoa - 217; Fungi - 85; Plants - 108; Viruses - 1; Other Eukaryotes - 2735 (source: NCBI BLink).  protein_id AT4G21840.1p  transcript_id AT4G21840.1  protein_id AT4G21840.1p  transcript_id AT4G21840.1  
At4g21850	chr4:011592020	0.0	C/11592020-11592138,11591548-11591794	AT4G21850.2  CDS  gene_syn T8O5.60, T8O5_60  go_function peptide-methionine-(S)-S-oxide reductase activity|GO:0008113||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein  note methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein; FUNCTIONS IN: peptide-methionine-(S)-S-oxide reductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Methionine sulphoxide reductase B (InterPro:IPR002579), Mss4-like (InterPro:IPR011057); BEST Arabidopsis thaliana protein match is: methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein (TAIR:AT4G21830.1); Has 5481 Blast hits to 5480 proteins in 1220 species: Archae - 49; Bacteria - 2654; Metazoa - 160; Fungi - 85; Plants - 108; Viruses - 1; Other Eukaryotes - 2424 (source: NCBI BLink).  protein_id AT4G21850.2p  transcript_id AT4G21850.2  protein_id AT4G21850.2p  transcript_id AT4G21850.2  
At4g21850	chr4:011592020	0.0	C/11592020-11592138,11591638-11591794,11591378-11591533	AT4G21850.1  CDS  gene_syn T8O5.60, T8O5_60  go_function peptide-methionine-(S)-S-oxide reductase activity|GO:0008113||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein  note methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein; FUNCTIONS IN: peptide-methionine-(S)-S-oxide reductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Methionine sulphoxide reductase B (InterPro:IPR002579), Mss4-like (InterPro:IPR011057); BEST Arabidopsis thaliana protein match is: methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein (TAIR:AT4G21830.1); Has 5873 Blast hits to 5872 proteins in 1229 species: Archae - 51; Bacteria - 2684; Metazoa - 217; Fungi - 85; Plants - 108; Viruses - 1; Other Eukaryotes - 2727 (source: NCBI BLink).  protein_id AT4G21850.1p  transcript_id AT4G21850.1  protein_id AT4G21850.1p  transcript_id AT4G21850.1  
At4g21860	chr4:011601215	0.0	C/11601215-11601507,11600478-11600634,11600238-11600396	AT4G21860.1  CDS  gene_syn MSRB2, T8O5.70, T8O5_70, methionine sulfoxide reductase B 2  gene MSRB2  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_function peptide-methionine-(S)-S-oxide reductase activity|GO:0008113||IEA  go_process biological_process|GO:0008150||ND  product MSRB2 (methionine sulfoxide reductase B 2); peptide-methionine-(S)-S-oxide reductase  note methionine sulfoxide reductase B 2 (MSRB2); FUNCTIONS IN: peptide-methionine-(S)-S-oxide reductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methionine sulphoxide reductase B (InterPro:IPR002579), Mss4-like (InterPro:IPR011057); BEST Arabidopsis thaliana protein match is: methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein (TAIR:AT4G04800.1); Has 5933 Blast hits to 5932 proteins in 1231 species: Archae - 53; Bacteria - 2689; Metazoa - 222; Fungi - 85; Plants - 108; Viruses - 1; Other Eukaryotes - 2775 (source: NCBI BLink).  protein_id AT4G21860.1p  transcript_id AT4G21860.1  protein_id AT4G21860.1p  transcript_id AT4G21860.1  
At4g21860	chr4:011601215	0.0	C/11601215-11601507,11600478-11600634,11600282-11600386	AT4G21860.2  CDS  gene_syn MSRB2, T8O5.70, T8O5_70, methionine sulfoxide reductase B 2  gene MSRB2  go_component chloroplast|GO:0009507|18431481|IDA  go_function peptide-methionine-(S)-S-oxide reductase activity|GO:0008113||IEA  go_process biological_process|GO:0008150||ND  product MSRB2 (methionine sulfoxide reductase B 2); peptide-methionine-(S)-S-oxide reductase  note methionine sulfoxide reductase B 2 (MSRB2); FUNCTIONS IN: peptide-methionine-(S)-S-oxide reductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methionine sulphoxide reductase B (InterPro:IPR002579), Mss4-like (InterPro:IPR011057); BEST Arabidopsis thaliana protein match is: methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein (TAIR:AT4G04830.1); Has 5495 Blast hits to 5494 proteins in 1225 species: Archae - 51; Bacteria - 2653; Metazoa - 161; Fungi - 85; Plants - 108; Viruses - 1; Other Eukaryotes - 2436 (source: NCBI BLink).  protein_id AT4G21860.2p  transcript_id AT4G21860.2  protein_id AT4G21860.2p  transcript_id AT4G21860.2  
At4g21865	chr4:011602029	0.0	W/11602029-11602029,11602200-11602292,11602566-11602754,11602901-11603082	AT4G21865.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G21865.1p  transcript_id AT4G21865.1  protein_id AT4G21865.1p  transcript_id AT4G21865.1  
At4g21870	chr4:011604153	0.0	C/11604153-11604285,11603756-11604027	AT4G21870.1  CDS  gene_syn T8O5.80, T8O5_80  go_component cellular_component|GO:0005575||ND  go_process response to heat|GO:0009408||ISS  product 26.5 kDa class P-related heat shock protein (HSP26.5-P)  note 26.5 kDa class P-related heat shock protein (HSP26.5-P); INVOLVED IN: response to heat; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP18.2 (heat shock protein 18.2) (TAIR:AT5G59720.1); Has 1539 Blast hits to 1539 proteins in 339 species: Archae - 25; Bacteria - 501; Metazoa - 0; Fungi - 42; Plants - 789; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink).  protein_id AT4G21870.1p  transcript_id AT4G21870.1  protein_id AT4G21870.1p  transcript_id AT4G21870.1  
At4g21880	chr4:011605156	0.0	W/11605156-11605282,11605358-11605429,11605562-11605609,11605707-11606327,11606420-11606596,11606853-11606914,11607641-11607748,11607838-11607951,11608150-11608245,11608306-11608497,11608835-11608954,11609170-11609274,11609366-11609530,11609643-11609770,11609858-11609936,11610132-11610349,11610468-11610651	AT4G21880.1  CDS  gene_syn T8O5.90, T8O5_90  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G04790.1); Has 8610 Blast hits to 4206 proteins in 137 species: Archae - 1; Bacteria - 4; Metazoa - 225; Fungi - 79; Plants - 8051; Viruses - 0; Other Eukaryotes - 250 (source: NCBI BLink).  protein_id AT4G21880.1p  transcript_id AT4G21880.1  protein_id AT4G21880.1p  transcript_id AT4G21880.1  
At4g21890	chr4:011611874	0.0	C/11611874-11612674	AT4G21890.1  CDS  gene_syn T8O5.100, T8O5_100  go_component nucleus|GO:0005634|14617066|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G21890.1p  transcript_id AT4G21890.1  protein_id AT4G21890.1p  transcript_id AT4G21890.1  
At4g21895	chr4:011613523	0.0	C/11613523-11614242	AT4G21895.1  CDS  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: AT hook, DNA-binding, conserved site (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT hook motif-containing protein (TAIR:AT5G52890.1); Has 19 Blast hits to 19 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G21895.1p  transcript_id AT4G21895.1  protein_id AT4G21895.1p  transcript_id AT4G21895.1  
At4g21900	chr4:011619261	0.0	C/11619261-11619349,11617771-11618845,11617308-11617409,11617044-11617222,11616755-11616944,11616567-11616662	AT4G21900.1  CDS  gene_syn T8O5.110, T8O5_110  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020|11152613|ISS  go_function transporter activity|GO:0005215||ISS  product antiporter/ drug transporter/ transporter  note antiporter/ drug transporter/ transporter; FUNCTIONS IN: antiporter activity, drug transporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: antiporter/ drug transporter (TAIR:AT2G16650.1); Has 42 Blast hits to 42 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT4G21900.1p  transcript_id AT4G21900.1  protein_id AT4G21900.1p  transcript_id AT4G21900.1  
At4g21902	chr4:011619786	0.0	W/11619786-11620139	AT4G21902.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G04745.1); Has 12 Blast hits to 12 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G21902.1p  transcript_id AT4G21902.1  protein_id AT4G21902.1p  transcript_id AT4G21902.1  
At4g21903	chr4:011623418	0.0	C/11623418-11623738,11622233-11622864,11622054-11622110,11621725-11621963,11621514-11621632,11621338-11621424,11621169-11621228	AT4G21903.1  CDS  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  product antiporter/ drug transporter  note antiporter/ drug transporter; FUNCTIONS IN: antiporter activity, drug transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT4G21910.3); Has 6294 Blast hits to 6115 proteins in 1144 species: Archae - 126; Bacteria - 3982; Metazoa - 124; Fungi - 209; Plants - 718; Viruses - 0; Other Eukaryotes - 1135 (source: NCBI BLink).  protein_id AT4G21903.1p  transcript_id AT4G21903.1  protein_id AT4G21903.1p  transcript_id AT4G21903.1  
At4g21910	chr4:011628921	0.0	C/11628921-11629253,11626917-11627548,11626713-11626769,11626381-11626619,11626167-11626285,11625989-11626075,11625822-11625883,11625742-11625742	AT4G21910.2  CDS  gene_syn T8O5.120, T8O5_120  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: drug transporter activity, antiporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: antiporter/ drug transporter (TAIR:AT4G21903.1); Has 6775 Blast hits to 6618 proteins in 1149 species: Archae - 132; Bacteria - 4348; Metazoa - 123; Fungi - 208; Plants - 707; Viruses - 0; Other Eukaryotes - 1257 (source: NCBI BLink).  protein_id AT4G21910.2p  transcript_id AT4G21910.2  protein_id AT4G21910.2p  transcript_id AT4G21910.2  
At4g21910	chr4:011630638	0.0	C/11630638-11630964,11626917-11627548,11626713-11626769,11626381-11626619,11626167-11626285,11625989-11626075,11625821-11625883	AT4G21910.3  CDS  gene_syn T8O5.120, T8O5_120  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: drug transporter activity, antiporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: antiporter/ drug transporter (TAIR:AT4G21903.1); Has 6477 Blast hits to 6379 proteins in 1135 species: Archae - 134; Bacteria - 4093; Metazoa - 123; Fungi - 208; Plants - 711; Viruses - 0; Other Eukaryotes - 1208 (source: NCBI BLink).  protein_id AT4G21910.3p  transcript_id AT4G21910.3  protein_id AT4G21910.3p  transcript_id AT4G21910.3  
At4g21910	chr4:011630638	0.0	C/11630638-11630964,11626917-11627548,11626713-11626769,11626381-11626619,11626167-11626285,11625989-11626075,11625822-11625883,11625742-11625742	AT4G21910.1  CDS  gene_syn T8O5.120, T8O5_120  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: drug transporter activity, antiporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: antiporter/ drug transporter (TAIR:AT4G21903.1); Has 6477 Blast hits to 6379 proteins in 1135 species: Archae - 134; Bacteria - 4093; Metazoa - 123; Fungi - 208; Plants - 711; Viruses - 0; Other Eukaryotes - 1208 (source: NCBI BLink).  protein_id AT4G21910.1p  transcript_id AT4G21910.1  protein_id AT4G21910.1p  transcript_id AT4G21910.1  
At4g21920	chr4:011636084	0.0	C/11636084-11636473	AT4G21920.1  CDS  gene_syn F1N20.1  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; Has 17 Blast hits to 17 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G21920.1p  transcript_id AT4G21920.1  protein_id AT4G21920.1p  transcript_id AT4G21920.1  
At4g21930	chr4:011639893	0.0	W/11639893-11640444	AT4G21930.1  CDS  gene_syn F1N20.2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF584 (InterPro:IPR007608); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61930.1); Has 196 Blast hits to 196 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 196; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G21930.1p  transcript_id AT4G21930.1  protein_id AT4G21930.1p  transcript_id AT4G21930.1  
At4g21926	chr4:011639915	0.0	C/11639915-11639970,11639716-11639765,11638961-11639064	AT4G21926.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G21926.1p  transcript_id AT4G21926.1  protein_id AT4G21926.1p  transcript_id AT4G21926.1  
At4g21940	chr4:011640847	0.0	W/11640847-11641615,11641977-11642120,11642206-11642358,11642457-11642569,11642651-11642818,11642901-11643028,11643111-11643210,11643298-11643387	AT4G21940.1  CDS  gene_syn CPK15, F1N20.5  gene CPK15  function member of Calcium Dependent Protein Kinase  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  go_function kinase activity|GO:0016301||ISS  product CPK15; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase  note CPK15; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CPK21; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT4G04720.1); Has 99593 Blast hits to 93200 proteins in 2802 species: Archae - 61; Bacteria - 7797; Metazoa - 42693; Fungi - 12818; Plants - 16205; Viruses - 451; Other Eukaryotes - 19568 (source: NCBI BLink).  protein_id AT4G21940.1p  transcript_id AT4G21940.1  protein_id AT4G21940.1p  transcript_id AT4G21940.1  
At4g21950	chr4:011644218	0.0	W/11644218-11644248,11644499-11644605	AT4G21950.1  CDS  gene_syn F1N20.4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G21950.1p  transcript_id AT4G21950.1  protein_id AT4G21950.1p  transcript_id AT4G21950.1  
At4g21960	chr4:011648085	0.0	C/11648085-11648312,11647775-11647963,11647508-11647673,11646613-11647022	AT4G21960.1  CDS  gene_syn F1N20.3, PEROXIDASE PRXR1, PRXR1  gene PRXR1  function Encodes AT4g21960 (AT4g21960/T8O5_170).  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product PRXR1; electron carrier/ heme binding / peroxidase  note PRXR1; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase 21 (PER21) (P21) (PRXR5) (TAIR:AT2G37130.1); Has 3093 Blast hits to 3081 proteins in 233 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 287; Plants - 2759; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT4G21960.1p  transcript_id AT4G21960.1  protein_id AT4G21960.1p  transcript_id AT4G21960.1  
At4g21970	chr4:011653633	0.0	W/11653633-11654106	AT4G21970.1  CDS  gene_syn F1N20.70  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF584 (InterPro:IPR007608); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G04630.1); Has 14 Blast hits to 14 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G21970.1p  transcript_id AT4G21970.1  protein_id AT4G21970.1p  transcript_id AT4G21970.1  
At4g21980	chr4:011655868	0.0	W/11655868-11655949,11656233-11656288,11656367-11656419,11656499-11656617,11656706-11656809	AT4G21980.2  CDS  gene_syn APG8A, ATG8A, AUTOPHAGY 8A, AUTOPHAGY-RELATED 8A, F1N20.80, F1N20_80  gene APG8A  function Encodes APG8, a component of autophagy conjugation pathway. Delivered to the lumens of vacuole under nitrogen-starvation condition. Highest expression in flowers. mRNA abundance increased during dark-induced carbon starvation. Predominantly cytoplasmic with or without N starvation. Upon concanamycin A the protein accumulates in the central vacuole as punctuate structures that resemble autophagic bodies. This localization is more abundant upon N starvation.  go_component cytoplasm|GO:0005737|16040659|IDA  go_component cytoplasm|GO:0005737||NAS  go_component vacuolar lumen|GO:0005775||NAS  go_component autophagic vacuole|GO:0005776|16040659|IDA  go_process autophagy|GO:0006914|12070171|ISS  go_function Atg8 ligase activity|GO:0019776|12070171|ISS  go_function APG8 activating enzyme activity|GO:0019779|12070171|ISS  go_function APG8-specific protease activity|GO:0019786|12070171|ISS  product APG8A (AUTOPHAGY 8A); APG8 activating enzyme/ APG8-specific protease/ Atg8 ligase  note AUTOPHAGY 8A (APG8A); FUNCTIONS IN: APG8-specific protease activity, APG8 activating enzyme activity, Atg8 ligase activity; INVOLVED IN: autophagy; LOCATED IN: vacuolar lumen, cytoplasm, autophagic vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: ATG8B (autophagy 8b); microtubule binding (TAIR:AT4G04620.2); Has 1168 Blast hits to 1166 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 583; Fungi - 125; Plants - 172; Viruses - 3; Other Eukaryotes - 285 (source: NCBI BLink).  protein_id AT4G21980.2p  transcript_id AT4G21980.2  protein_id AT4G21980.2p  transcript_id AT4G21980.2  
At4g21980	chr4:011655913	0.0	W/11655913-11655949,11656233-11656288,11656367-11656419,11656499-11656617,11656706-11656809	AT4G21980.1  CDS  gene_syn APG8A, ATG8A, AUTOPHAGY 8A, AUTOPHAGY-RELATED 8A, F1N20.80, F1N20_80  gene APG8A  function Encodes APG8, a component of autophagy conjugation pathway. Delivered to the lumens of vacuole under nitrogen-starvation condition. Highest expression in flowers. mRNA abundance increased during dark-induced carbon starvation. Predominantly cytoplasmic with or without N starvation. Upon concanamycin A the protein accumulates in the central vacuole as punctuate structures that resemble autophagic bodies. This localization is more abundant upon N starvation.  go_component cytoplasm|GO:0005737|16040659|IDA  go_component cytoplasm|GO:0005737||NAS  go_component vacuolar lumen|GO:0005775||NAS  go_component autophagic vacuole|GO:0005776|16040659|IDA  go_process autophagy|GO:0006914|12070171|ISS  go_function Atg8 ligase activity|GO:0019776|12070171|ISS  go_function APG8 activating enzyme activity|GO:0019779|12070171|ISS  go_function APG8-specific protease activity|GO:0019786|12070171|ISS  product APG8A (AUTOPHAGY 8A); APG8 activating enzyme/ APG8-specific protease/ Atg8 ligase  note AUTOPHAGY 8A (APG8A); FUNCTIONS IN: APG8-specific protease activity, APG8 activating enzyme activity, Atg8 ligase activity; INVOLVED IN: autophagy; LOCATED IN: vacuolar lumen, cytoplasm, autophagic vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: ATG8B (autophagy 8b); microtubule binding (TAIR:AT4G04620.2); Has 1166 Blast hits to 1164 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 581; Fungi - 125; Plants - 172; Viruses - 3; Other Eukaryotes - 285 (source: NCBI BLink).  protein_id AT4G21980.1p  transcript_id AT4G21980.1  protein_id AT4G21980.1p  transcript_id AT4G21980.1  
At4g21990	chr4:011658895	0.0	C/11658895-11658973,11658618-11658752,11658396-11658531,11657284-11658310	AT4G21990.1  CDS  gene_syn 5 -ADENYLYLPHOSPHOSULFATE REDUCTASE, APR3, APS REDUCTASE 3, ATAPR3, F1N20.90, F1N20_90, PAPS REDUCTASE HOMOLOG 26, PRH-26, PRH26  gene APR3  function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5 -phosphosulfate reductase-like (APRL) group.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|8917600|ISS  go_process sulfate assimilation|GO:0000103|8917600|IGI  go_process sulfate assimilation|GO:0000103|9653199|IDA  go_function adenylyl-sulfate reductase activity|GO:0009973|9653199|IDA  product APR3 (APS REDUCTASE 3); adenylyl-sulfate reductase  note APS REDUCTASE 3 (APR3); FUNCTIONS IN: adenylyl-sulfate reductase activity; INVOLVED IN: sulfate assimilation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Thioredoxin-independent 5&apos;-adenylylsulphate reductase (InterPro:IPR004508), Thioredoxin fold (InterPro:IPR012335), Phosphoadenosine phosphosulphate reductase (InterPro:IPR002500), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: APR1 (APS REDUCTASE 1); adenylyl-sulfate reductase (TAIR:AT4G04610.1); Has 3878 Blast hits to 3499 proteins in 1032 species: Archae - 84; Bacteria - 1535; Metazoa - 1053; Fungi - 344; Plants - 313; Viruses - 0; Other Eukaryotes - 549 (source: NCBI BLink).  protein_id AT4G21990.1p  transcript_id AT4G21990.1  protein_id AT4G21990.1p  transcript_id AT4G21990.1  
At4g22000	chr4:011659810	0.0	C/11659810-11660202	AT4G22000.1  CDS  gene_syn F1N20.100, F1N20_100  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 22 Blast hits to 22 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22000.1p  transcript_id AT4G22000.1  protein_id AT4G22000.1p  transcript_id AT4G22000.1  
At4g22010	chr4:011663429	0.0	W/11663429-11663563,11663676-11663785,11664728-11664998,11665102-11665550,11665656-11666024,11666172-11666463	AT4G22010.1  CDS  gene_syn F1N20.110, F1N20_110, SKU5 Similar 4, sks4  gene sks4  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function copper ion binding|GO:0005507||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product sks4 (SKU5 Similar 4); copper ion binding / oxidoreductase  note SKU5 Similar 4 (sks4); FUNCTIONS IN: oxidoreductase activity, copper ion binding; LOCATED IN: membrane, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: sks5 (SKU5 Similar 5); copper ion binding / oxidoreductase (TAIR:AT1G76160.1); Has 3691 Blast hits to 3663 proteins in 668 species: Archae - 2; Bacteria - 955; Metazoa - 261; Fungi - 1515; Plants - 831; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).  protein_id AT4G22010.1p  transcript_id AT4G22010.1  protein_id AT4G22010.1p  transcript_id AT4G22010.1  
At4g22020	chr4:011669266	0.0	W/11669266-11670456	AT4G22020.1  pseudogenic_transcript  pseudo  gene_syn F1N20.120, F1N20_120  note pseudogene, hypothetical protein, similar to uncharacterized glycine-rich protein (GI:7269047) {Arabidopsis thaliana}  
At4g22030	chr4:011672396	0.0	W/11672396-11673606,11674359-11674534,11675082-11675575	AT4G22030.1  CDS  gene_syn F1N20.130, F1N20_130  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G04480.1); Has 268 Blast hits to 197 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 268; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22030.1p  transcript_id AT4G22030.1  protein_id AT4G22030.1p  transcript_id AT4G22030.1  
At4g22040	chr4:011676660	0.0	C/11676660-11681092	AT4G22040.1  mRNA_TE_gene  pseudo  gene_syn F1N20.140, F1N20_140  note Transposable element gene, copia-like retrotransposon family, has a 5.3e-193 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)  
At4g22050	chr4:011683865	0.0	W/11683865-11684162,11684427-11684911,11684992-11685111,11685212-11685276,11685410-11685506	AT4G22050.1  CDS  gene_syn F1N20.150, F1N20_150  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: aspartic-type endopeptidase (TAIR:AT1G69100.1); Has 3509 Blast hits to 3383 proteins in 330 species: Archae - 0; Bacteria - 0; Metazoa - 1687; Fungi - 1005; Plants - 323; Viruses - 0; Other Eukaryotes - 494 (source: NCBI BLink).  protein_id AT4G22050.1p  transcript_id AT4G22050.1  protein_id AT4G22050.1p  transcript_id AT4G22050.1  
At4g22060	chr4:011687620	0.0	W/11687620-11688819	AT4G22060.1  CDS  gene_syn F1N20.160, F1N20_160  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G22180.1); Has 266 Blast hits to 258 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 264; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G22060.1p  transcript_id AT4G22060.1  protein_id AT4G22060.1p  transcript_id AT4G22060.1  
At4g22065	chr4:011689187	0.0	W/11689187-11689600	AT4G22065.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.5e-09 P-value blast match to GB:AAB51275 reverse transcriptase, gag, polyprotein (Ty1_Copia-element) (Volvox carteri f. nagariensis)  
At4g22066	chr4:011690207	0.0	C/11690207-11690887	AT4G22066.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G66830; F-box family protein  
At4g22070	chr4:011694004	0.0	C/11694004-11694234,11693680-11693778,11693273-11693434,11692321-11692713,11692112-11692225,11691381-11691998	AT4G22070.1  CDS  gene_syn AtWRKY31, F1N20.170, F1N20_170, WRKY31  gene WRKY31  function member of WRKY Transcription Factor; Group II-b  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY31; transcription factor  note WRKY31; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: sperm cell, leaf whorl, petal, flower, root; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY42; transcription factor (TAIR:AT4G04450.1); Has 2587 Blast hits to 2122 proteins in 183 species: Archae - 0; Bacteria - 8; Metazoa - 117; Fungi - 46; Plants - 2027; Viruses - 1; Other Eukaryotes - 388 (source: NCBI BLink).  protein_id AT4G22070.1p  transcript_id AT4G22070.1  protein_id AT4G22070.1p  transcript_id AT4G22070.1  
At4g22080	chr4:011701834	0.0	C/11701834-11702553,11701631-11701734,11701408-11701546,11700734-11700955	AT4G22080.1  CDS  gene_syn F1N20.180, F1N20_180  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function lyase activity|GO:0016829||ISS  go_function pectate lyase activity|GO:0030570||ISS  product pectate lyase family protein  note pectate lyase family protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: pectate lyase family protein (TAIR:AT4G22090.1); Has 936 Blast hits to 933 proteins in 167 species: Archae - 0; Bacteria - 401; Metazoa - 0; Fungi - 129; Plants - 398; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT4G22080.1p  transcript_id AT4G22080.1  protein_id AT4G22080.1p  transcript_id AT4G22080.1  
At4g22090	chr4:011705323	0.0	C/11705323-11706042,11705126-11705229,11704823-11704961,11704003-11704224	AT4G22090.1  CDS  gene_syn F1N20.190, F1N20_190  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function lyase activity|GO:0016829||ISS  go_function pectate lyase activity|GO:0030570||ISS  product pectate lyase family protein  note pectate lyase family protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectate lyase family protein (TAIR:AT4G22080.1); Has 940 Blast hits to 937 proteins in 166 species: Archae - 0; Bacteria - 402; Metazoa - 0; Fungi - 132; Plants - 398; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT4G22090.1p  transcript_id AT4G22090.1  protein_id AT4G22090.1p  transcript_id AT4G22090.1  
At4g22100	chr4:011709810	0.0	C/11709810-11709932,11709667-11709730,11709510-11709559,11709340-11709415,11709195-11709266,11709039-11709126,11708692-11708944,11708502-11708617,11708190-11708413,11708041-11708072,11707871-11707958,11707691-11707787,11707370-11707610	AT4G22100.1  CDS  gene_syn BETA GLUCOSIDASE 2, BGLU3, F1N20.200, F1N20_200  gene BGLU3  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU3 (BETA GLUCOSIDASE 2); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 2 (BGLU3); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU4 (BETA GLUCOSIDASE 4); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G60090.1); Has 5688 Blast hits to 5474 proteins in 796 species: Archae - 100; Bacteria - 3093; Metazoa - 584; Fungi - 136; Plants - 842; Viruses - 0; Other Eukaryotes - 933 (source: NCBI BLink).  protein_id AT4G22100.1p  transcript_id AT4G22100.1  protein_id AT4G22100.1p  transcript_id AT4G22100.1  
At4g22105	chr4:011710542	0.0	C/11710542-11710608,11710218-11710414	AT4G22105.1  CDS  gene_syn SCR-Like 26, SCRL26  gene SCRL26  function Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165||IEA  product SCRL26 (SCR-Like 26)  note SCR-Like 26 (SCRL26); INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility response (InterPro:IPR010682); BEST Arabidopsis thaliana protein match is: SCRL14 (SCR-Like 14) (TAIR:AT4G22115.1); Has 35 Blast hits to 35 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22105.1p  transcript_id AT4G22105.1  protein_id AT4G22105.1p  transcript_id AT4G22105.1  
At4g22110	chr4:011713752	0.0	C/11713752-11713946,11713624-11713670,11713215-11713543,11712998-11713080,11712833-11712908,11712208-11712272,11711974-11712069,11711661-11711822,11711422-11711538	AT4G22110.1  CDS  gene_syn F1N20.210, F1N20_210  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  product alcohol dehydrogenase, putative  note alcohol dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, binding, zinc ion binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: alcohol dehydrogenase, putative (TAIR:AT1G22430.2); Has 20609 Blast hits to 20600 proteins in 1943 species: Archae - 368; Bacteria - 11223; Metazoa - 1136; Fungi - 1588; Plants - 3046; Viruses - 3; Other Eukaryotes - 3245 (source: NCBI BLink).  protein_id AT4G22110.1p  transcript_id AT4G22110.1  protein_id AT4G22110.1p  transcript_id AT4G22110.1  
At4g22110	chr4:011713752	0.0	C/11713752-11713946,11713624-11713670,11713215-11713543,11712998-11713080,11712833-11712908,11712208-11712272,11711974-11712069,11711661-11711822,11711422-11711538	AT4G22110.2  CDS  gene_syn F1N20.210, F1N20_210  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  product alcohol dehydrogenase, putative  note alcohol dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: alcohol dehydrogenase, putative (TAIR:AT1G22430.2); Has 20609 Blast hits to 20600 proteins in 1943 species: Archae - 368; Bacteria - 11223; Metazoa - 1136; Fungi - 1588; Plants - 3046; Viruses - 3; Other Eukaryotes - 3245 (source: NCBI BLink).  protein_id AT4G22110.2p  transcript_id AT4G22110.2  protein_id AT4G22110.2p  transcript_id AT4G22110.2  
At4g22115	chr4:011715101	0.0	C/11715101-11715167,11714743-11714936	AT4G22115.1  CDS  gene_syn SCR-Like 14, SCRL14  gene SCRL14  function Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165||IEA  product SCRL14 (SCR-Like 14)  note SCR-Like 14 (SCRL14); INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility response (InterPro:IPR010682); BEST Arabidopsis thaliana protein match is: SCRL26 (SCR-Like 26) (TAIR:AT4G22105.1); Has 38 Blast hits to 38 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22115.1p  transcript_id AT4G22115.1  protein_id AT4G22115.1p  transcript_id AT4G22115.1  
At4g22120	chr4:011718831	0.0	C/11718831-11719144,11718448-11718606,11718216-11718351,11718029-11718130,11717805-11717924,11717301-11717722,11716639-11717209,11716327-11716560,11715976-11716233	AT4G22120.1  CDS  gene_syn F1N20.220, F1N20_220  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  product early-responsive to dehydration protein-related / ERD protein-related  note early-responsive to dehydration protein-related / ERD protein-related; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: early-responsive to dehydration protein-related / ERD protein-related (TAIR:AT4G04340.3); Has 949 Blast hits to 842 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 455; Plants - 257; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT4G22120.1p  transcript_id AT4G22120.1  protein_id AT4G22120.1p  transcript_id AT4G22120.1  
At4g22120	chr4:011718831	0.0	C/11718831-11719144,11718448-11718606,11718216-11718351,11718029-11718130,11717805-11717924,11717301-11717722,11716639-11717209,11716327-11716560,11715976-11716233	AT4G22120.2  CDS  gene_syn F1N20.220, F1N20_220  go_component plasma membrane|GO:0005886|17317660|IDA  product early-responsive to dehydration protein-related / ERD protein-related  note early-responsive to dehydration protein-related / ERD protein-related; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: early-responsive to dehydration protein-related / ERD protein-related (TAIR:AT4G04340.3); Has 949 Blast hits to 842 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 455; Plants - 257; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT4G22120.2p  transcript_id AT4G22120.2  protein_id AT4G22120.2p  transcript_id AT4G22120.2  
At4g22120	chr4:011718831	0.0	C/11718831-11719144,11718448-11718606,11718216-11718351,11718029-11718130,11717805-11717924,11717301-11717722,11716639-11717209,11716327-11716560,11715976-11716233	AT4G22120.3  CDS  gene_syn F1N20.220, F1N20_220  go_component plasma membrane|GO:0005886|17317660|IDA  product early-responsive to dehydration protein-related / ERD protein-related  note early-responsive to dehydration protein-related / ERD protein-related; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: early-responsive to dehydration protein-related / ERD protein-related (TAIR:AT4G04340.3); Has 949 Blast hits to 842 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 455; Plants - 257; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT4G22120.3p  transcript_id AT4G22120.3  protein_id AT4G22120.3p  transcript_id AT4G22120.3  
At4g22120	chr4:011718831	0.0	C/11718831-11719144,11718448-11718606,11718216-11718351,11718029-11718130,11717805-11717924,11717301-11717722,11716639-11717209,11716327-11716560,11715976-11716233	AT4G22120.4  CDS  gene_syn F1N20.220, F1N20_220  go_component plasma membrane|GO:0005886|17317660|IDA  product early-responsive to dehydration protein-related / ERD protein-related  note early-responsive to dehydration protein-related / ERD protein-related; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: early-responsive to dehydration protein-related / ERD protein-related (TAIR:AT4G04340.3); Has 949 Blast hits to 842 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 455; Plants - 257; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT4G22120.4p  transcript_id AT4G22120.4  protein_id AT4G22120.4p  transcript_id AT4G22120.4  
At4g22120	chr4:011718831	0.0	C/11718831-11719144,11718448-11718606,11718216-11718351,11718029-11718130,11717805-11717924,11717301-11717722,11716639-11717209,11716327-11716560,11715976-11716233	AT4G22120.5  CDS  gene_syn F1N20.220, F1N20_220  go_component plasma membrane|GO:0005886|17317660|IDA  product early-responsive to dehydration protein-related / ERD protein-related  note early-responsive to dehydration protein-related / ERD protein-related; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: early-responsive to dehydration protein-related / ERD protein-related (TAIR:AT4G04340.3); Has 949 Blast hits to 842 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 455; Plants - 257; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT4G22120.5p  transcript_id AT4G22120.5  protein_id AT4G22120.5p  transcript_id AT4G22120.5  
At4g22130	chr4:011723733	0.0	W/11723733-11723832,11724169-11724301,11724403-11724474,11724574-11724639,11724729-11724800,11724887-11724958,11725035-11725106,11725200-11725265,11725345-11725410,11725487-11726021,11726108-11726379,11726467-11726602,11726681-11726820,11726923-11727079,11727179-11727331	AT4G22130.1  CDS  gene_syn F1N20.230, F1N20_230, SRF8, STRUBBELIG-RECEPTOR FAMILY 8  gene SRF8  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product SRF8 (STRUBBELIG-RECEPTOR FAMILY 8); ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note STRUBBELIG-RECEPTOR FAMILY 8 (SRF8); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: SRF7 (STRUBBELIG-RECEPTOR FAMILY 7); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT3G14350.1); Has 108484 Blast hits to 87791 proteins in 3073 species: Archae - 64; Bacteria - 8637; Metazoa - 40199; Fungi - 6157; Plants - 38215; Viruses - 320; Other Eukaryotes - 14892 (source: NCBI BLink).  protein_id AT4G22130.1p  transcript_id AT4G22130.1  protein_id AT4G22130.1p  transcript_id AT4G22130.1  
At4g22130	chr4:011724781	0.0	W/11724781-11724800,11724887-11724958,11725035-11725106,11725200-11725265,11725345-11725410,11725487-11726021,11726108-11726379,11726467-11726602,11726681-11726820,11726923-11727079,11727179-11727331	AT4G22130.2  CDS  gene_syn F1N20.230, F1N20_230, SRF8, STRUBBELIG-RECEPTOR FAMILY 8  gene SRF8  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product SRF8 (STRUBBELIG-RECEPTOR FAMILY 8); ATP binding / kinase/ protein binding / protein kinase  note STRUBBELIG-RECEPTOR FAMILY 8 (SRF8); FUNCTIONS IN: protein binding, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: SRF6 (STRUBBELIG-RECEPTOR FAMILY 6); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT1G53730.1); Has 99480 Blast hits to 82428 proteins in 2989 species: Archae - 46; Bacteria - 7531; Metazoa - 35438; Fungi - 5915; Plants - 36392; Viruses - 314; Other Eukaryotes - 13844 (source: NCBI BLink).  protein_id AT4G22130.2p  transcript_id AT4G22130.2  protein_id AT4G22130.2p  transcript_id AT4G22130.2  
At4g22140	chr4:011730134	0.0	C/11730134-11730230,11729054-11729396,11728887-11728955,11728556-11728751	AT4G22140.1  CDS  gene_syn F1N20.240, F1N20_240  go_function DNA binding|GO:0003677||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product DNA binding / protein binding / zinc ion binding  note DNA binding / protein binding / zinc ion binding; FUNCTIONS IN: protein binding, DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Bromo adjacent region (InterPro:IPR001025), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT4G04260.1); Has 1467 Blast hits to 1417 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 921; Fungi - 186; Plants - 236; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).  protein_id AT4G22140.1p  transcript_id AT4G22140.1  protein_id AT4G22140.1p  transcript_id AT4G22140.1  
At4g22140	chr4:011730134	0.0	C/11730134-11730230,11729054-11729396,11728887-11728955,11728613-11728751,11728093-11728119	AT4G22140.2  CDS  gene_syn F1N20.240, F1N20_240  go_function DNA binding|GO:0003677||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product DNA binding / protein binding / zinc ion binding  note DNA binding / protein binding / zinc ion binding; FUNCTIONS IN: protein binding, DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Bromo adjacent region (InterPro:IPR001025), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT4G04260.1); Has 1477 Blast hits to 1427 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 934; Fungi - 187; Plants - 236; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).  protein_id AT4G22140.2p  transcript_id AT4G22140.2  protein_id AT4G22140.2p  transcript_id AT4G22140.2  
At4g22150	chr4:011732457	0.0	C/11732457-11732800,11731927-11732212,11731745-11731840,11731272-11731649	AT4G22150.1  CDS  gene_syn LANT UBX DOMAIN-CONTAINING PROTEIN 3, PUX3, T10I14.3, T10I14_3  gene PUX3  function Arabidopsis thaliana CDC48-interacting UBX-domain protein (PUX3)  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515|17190830|TAS  product PUX3; protein binding  note PUX3; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012), SEP (InterPro:IPR012989); BEST Arabidopsis thaliana protein match is: PUX4; protein binding (TAIR:AT4G04210.1); Has 473 Blast hits to 471 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 270; Fungi - 94; Plants - 56; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT4G22150.1p  transcript_id AT4G22150.1  protein_id AT4G22150.1p  transcript_id AT4G22150.1  
At4g22160	chr4:011733182	0.0	W/11733182-11733606,11733814-11733880	AT4G22160.2  CDS  gene_syn T10I14.8  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage; Has 24 Blast hits to 24 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22160.2p  transcript_id AT4G22160.2  protein_id AT4G22160.2p  transcript_id AT4G22160.2  
At4g22160	chr4:011733182	0.0	W/11733182-11733610	AT4G22160.1  CDS  gene_syn T10I14.8  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage; Has 24 Blast hits to 24 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22160.1p  transcript_id AT4G22160.1  protein_id AT4G22160.1p  transcript_id AT4G22160.1  
At4g22165	chr4:011734328	0.0	W/11734328-11735419	AT4G22165.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G22660.1); Has 282 Blast hits to 268 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 282; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22165.1p  transcript_id AT4G22165.1  protein_id AT4G22165.1p  transcript_id AT4G22165.1  
At4g22170	chr4:011736653	0.0	W/11736653-11737744	AT4G22170.1  CDS  gene_syn T10I14.7, T10I14_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G22165.1); Has 227 Blast hits to 216 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 227; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22170.1p  transcript_id AT4G22170.1  protein_id AT4G22170.1p  transcript_id AT4G22170.1  
At4g22180	chr4:011738574	0.0	W/11738574-11739782	AT4G22180.1  CDS  gene_syn T10I14.10, T10I14_10  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G22165.1); Has 336 Blast hits to 324 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 336; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22180.1p  transcript_id AT4G22180.1  protein_id AT4G22180.1p  transcript_id AT4G22180.1  
At4g22185	chr4:011740053	0.0	W/11740053-11741234	AT4G22185.1  pseudogenic_transcript  pseudo  note pseudogene, similar to P0537A05.16, similar to protein; blastp match of 28% identity and 3.1e-07 P-value to GP|13366010|dbj|BAB39287.1||AP002971 P0537A05.16 {Oryza sativa (japonica cultivar-group)}  
At4g22190	chr4:011742102	0.0	C/11742102-11743265	AT4G22190.1  CDS  gene_syn T10I14.20, T10I14_20  product unknown protein  note unknown protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 261 Blast hits to 128 proteins in 36 species: Archae - 0; Bacteria - 2; Metazoa - 26; Fungi - 10; Plants - 24; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink).  protein_id AT4G22190.1p  transcript_id AT4G22190.1  protein_id AT4G22190.1p  transcript_id AT4G22190.1  
At4g22200	chr4:011749865	0.0	C/11749865-11750091,11749532-11749750,11749118-11749276,11748979-11749036,11748574-11748888,11748245-11748484,11747651-11748166,11747483-11747558,11746926-11747399,11746666-11746790	AT4G22200.1  CDS  gene_syn AKT2, AKT2/3, AKT3, ARABIDOPSIS POTASSIUM TRANSPORT 2/3, T10I14.30, T10I14_30  gene AKT2/3  function Encodes a photosynthate- and light-dependent inward rectifying potassium channel with unique gating properties that are regulated by phosphorylation. Expressed in guard cell protoplasts and in the phloem and xylem of aerial portions of the plant. The channel can coassemble with another K+ channel, KAT1, in vitro. In guard cells, AKT2/3 is responsible for the Ca2+ sensitivity of the K+ uptake channel. In the phloem, it regulates the sucrose/H+ symporters via the phloem potential.  go_component membrane|GO:0016020||IEA  go_process response to abscisic acid stimulus|GO:0009737|10852932|IEP  go_process regulation of membrane potential|GO:0042391|12172027|IMP  go_function inward rectifier potassium channel activity|GO:0005242|10852932|IDA  go_function inward rectifier potassium channel activity|GO:0005242||ISS  go_function protein binding|GO:0005515|11181729|IPI  go_function cyclic nucleotide binding|GO:0030551||ISS  product AKT2/3 (ARABIDOPSIS POTASSIUM TRANSPORT 2/3); cyclic nucleotide binding / inward rectifier potassium channel/ protein binding  note ARABIDOPSIS POTASSIUM TRANSPORT 2/3 (AKT2/3); FUNCTIONS IN: cyclic nucleotide binding, protein binding, inward rectifier potassium channel activity; INVOLVED IN: regulation of membrane potential, response to abscisic acid stimulus; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Cyclic nucleotide-binding, conserved site (InterPro:IPR018488), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: AKT1 (ARABIDOPSIS K TRANSPORTER 1); cyclic nucleotide binding / inward rectifier potassium channel (TAIR:AT2G26650.1); Has 43704 Blast hits to 20440 proteins in 843 species: Archae - 78; Bacteria - 2948; Metazoa - 23340; Fungi - 2469; Plants - 1305; Viruses - 418; Other Eukaryotes - 13146 (source: NCBI BLink).  protein_id AT4G22200.1p  transcript_id AT4G22200.1  protein_id AT4G22200.1p  transcript_id AT4G22200.1  
At4g22210	chr4:011752468	0.0	W/11752468-11752543,11752632-11752816	AT4G22210.1  CDS  gene_syn LCR85, Low-molecular-weight cysteine-rich 85, T10I14.12  gene LCR85  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  go_function molecular_function|GO:0003674||ND  product LCR85 (Low-molecular-weight cysteine-rich 85)  note Low-molecular-weight cysteine-rich 85 (LCR85); FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22212.1); Has 21 Blast hits to 21 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22210.1p  transcript_id AT4G22210.1  protein_id AT4G22210.1p  transcript_id AT4G22210.1  
At4g22212	chr4:011754019	0.0	W/11754019-11754094,11754216-11754406	AT4G22212.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||IEA  product unknown protein  note INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, 4 leaf senescence stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: LCR85 (Low-molecular-weight cysteine-rich 85) (TAIR:AT4G22210.1); Has 25 Blast hits to 25 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22212.1p  transcript_id AT4G22212.1  protein_id AT4G22212.1p  transcript_id AT4G22212.1  
At4g22214	chr4:011755358	0.0	W/11755358-11755436,11755528-11756015	AT4G22214.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22230.1); Has 22 Blast hits to 20 proteins in 3 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22214.1p  transcript_id AT4G22214.1  protein_id AT4G22214.1p  transcript_id AT4G22214.1  
At4g22217	chr4:011758625	0.0	W/11758625-11758700,11758779-11758966	AT4G22217.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22212.1); Has 23 Blast hits to 21 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22217.1p  transcript_id AT4G22217.1  protein_id AT4G22217.1p  transcript_id AT4G22217.1  
At4g22220	chr4:011760584	0.0	C/11760584-11760881,11760141-11760195,11759444-11759594	AT4G22220.1  CDS  gene_syn ATISU1, ISU1, T10I14.50, T10I14_50  gene ISU1  function Encodes a mitochondrial protein similar to E.coli IscU. In bacteria, IscU is a scaffold protein accepting sulfur and iron to build a transient Fe-S cluster,which is subsequently transferred to a target apoprotein.  go_component mitochondrion|GO:0005739|15792798|IDA  go_process iron-sulfur cluster assembly|GO:0016226|15792798|IGI  go_process iron-sulfur cluster assembly|GO:0016226||ISS  go_function structural molecule activity|GO:0005198|15792798|ISS  product ISU1; structural molecule  note ISU1; FUNCTIONS IN: structural molecule activity; INVOLVED IN: iron-sulfur cluster assembly; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NIF system FeS cluster assembly, NifU, N-terminal (InterPro:IPR002871), ISC system FeS cluster assembly, IscU scaffold (InterPro:IPR011339); BEST Arabidopsis thaliana protein match is: ISU3 (ISCU-LIKE 3); structural molecule (TAIR:AT4G04080.1); Has 3579 Blast hits to 3579 proteins in 1083 species: Archae - 68; Bacteria - 1960; Metazoa - 117; Fungi - 106; Plants - 54; Viruses - 0; Other Eukaryotes - 1274 (source: NCBI BLink).  protein_id AT4G22220.1p  transcript_id AT4G22220.1  protein_id AT4G22220.1p  transcript_id AT4G22220.1  
At4g22230	chr4:011762292	0.0	W/11762292-11762367,11762455-11762657	AT4G22230.1  CDS  gene_syn T10I14.60, T10I14_60  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22235.1); Has 25 Blast hits to 25 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22230.1p  transcript_id AT4G22230.1  protein_id AT4G22230.1p  transcript_id AT4G22230.1  
At4g22230	chr4:011762292	0.0	W/11762292-11762367,11762458-11762657	AT4G22230.2  CDS  gene_syn T10I14.60, T10I14_60  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22235.2); Has 25 Blast hits to 25 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22230.2p  transcript_id AT4G22230.2  protein_id AT4G22230.2p  transcript_id AT4G22230.2  
At4g22233	chr4:011763454	0.0	C/11763454-11763869	AT4G22233.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT4G22235  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G22233.2  
At4g22233	chr4:011763543	0.0	C/11763543-11763985	AT4G22233.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT4G22235  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G22233.1  
At4g22235	chr4:011763725	0.0	W/11763725-11763794,11763884-11764089	AT4G22235.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22230.1); Has 16 Blast hits to 16 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22235.1p  transcript_id AT4G22235.1  protein_id AT4G22235.1p  transcript_id AT4G22235.1  
At4g22235	chr4:011763725	0.0	W/11763725-11763794,11763887-11764089	AT4G22235.2  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22230.2); Has 16 Blast hits to 16 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22235.2p  transcript_id AT4G22235.2  protein_id AT4G22235.2p  transcript_id AT4G22235.2  
At4g22240	chr4:011766806	0.0	C/11766806-11767227,11766490-11766685,11766090-11766404	AT4G22240.1  CDS  gene_syn T10I14.70, T10I14_70  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_function structural molecule activity|GO:0005198||IEA  go_component plastoglobule|GO:0010287|16461379|IDA  go_process biological_process|GO:0008150||ND  go_function structural molecule activity|GO:0005198||ISS  product plastid-lipid associated protein PAP, putative  note plastid-lipid associated protein PAP, putative; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast, plastoglobule; EXPRESSED IN: fruit, guard cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: PAP fibrillin (InterPro:IPR006843); BEST Arabidopsis thaliana protein match is: FIB (FIBRILLIN); structural molecule (TAIR:AT4G04020.1); Has 296 Blast hits to 296 proteins in 63 species: Archae - 0; Bacteria - 66; Metazoa - 0; Fungi - 0; Plants - 219; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT4G22240.1p  transcript_id AT4G22240.1  protein_id AT4G22240.1p  transcript_id AT4G22240.1  
At4g22250	chr4:011767685	0.0	C/11767685-11768329	AT4G22250.1  CDS  gene_syn T10I14.80, T10I14_80  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G03965.1); Has 650 Blast hits to 650 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 267; Fungi - 50; Plants - 164; Viruses - 41; Other Eukaryotes - 128 (source: NCBI BLink).  protein_id AT4G22250.1p  transcript_id AT4G22250.1  protein_id AT4G22250.1p  transcript_id AT4G22250.1  
At4g22260	chr4:011772202	0.0	C/11772202-11772350,11771881-11772070,11771654-11771747,11771156-11771271,11770960-11771068,11770800-11770868,11770561-11770632,11770412-11770459,11769967-11770175	AT4G22260.1  CDS  gene_syn IM, IM1, IMMUTANS, PLASTID TERMINAL OXIDASE, PTOX, T10I14.90, T10I14_90  gene IM  function Similar to mitochondrial alternative oxidase. im mutants have a variegated phenotype and fail to differentiate chloroplasts in the majority of their cells under high light intensity continuous illumination. The white tissues of immutans accumulate phytoene, a non-colored C40 carotenoid intermediate. This suggests that immutans controls, either directly or indirectly, the activity of phytoene desaturase (PDS), the enzyme that converts phytoene to zeta-carotene in higher plants. However, im is not the structural gene for PDS. It is located in the lumenar face of the thylakoid membrane. IM is expressed ubiquitously in plant tissues.  go_component thylakoid|GO:0009579|9878632|IDA  go_process response to temperature stimulus|GO:0009266|9878631|TAS  go_process response to high light intensity|GO:0009644|9878631|TAS  go_process plastid organization|GO:0009657|11553735|IMP  go_process chloroplast organization|GO:0009658||NAS  go_process carotenoid biosynthetic process|GO:0016117|9878632|IMP  go_function alternative oxidase activity|GO:0009916|15032871|ISS  product IM (IMMUTANS); alternative oxidase  note IMMUTANS (IM); FUNCTIONS IN: alternative oxidase activity; INVOLVED IN: response to high light intensity, plastid organization, chloroplast organization, carotenoid biosynthetic process, response to temperature stimulus; LOCATED IN: thylakoid; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alternative oxidase (InterPro:IPR002680); BEST Arabidopsis thaliana protein match is: AOX2; alternative oxidase (TAIR:AT5G64210.1); Has 1324 Blast hits to 1324 proteins in 157 species: Archae - 0; Bacteria - 91; Metazoa - 4; Fungi - 133; Plants - 278; Viruses - 4; Other Eukaryotes - 814 (source: NCBI BLink).  protein_id AT4G22260.1p  transcript_id AT4G22260.1  protein_id AT4G22260.1p  transcript_id AT4G22260.1  
At4g22270	chr4:011773396	0.0	W/11773396-11773809,11774620-11775072,11775161-11775467,11775547-11775672,11775769-11775782	AT4G22270.1  CDS  gene_syn T10I14.100, T10I14_100  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G03820.1); Has 80 Blast hits to 80 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G22270.1p  transcript_id AT4G22270.1  protein_id AT4G22270.1p  transcript_id AT4G22270.1  
At4g22265	chr4:011774461	0.0	C/11774461-11774496	AT4G22265.1  tRNA  gene_syn 67140.TRNA-TYR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT4G22265.1  
At4g22280	chr4:011776672	0.0	C/11776672-11777517,11776368-11776520	AT4G22280.2  CDS  gene_syn T10I14.110, T10I14_110  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G58920.1); Has 1204 Blast hits to 1171 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1204; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22280.2p  transcript_id AT4G22280.2  protein_id AT4G22280.2p  transcript_id AT4G22280.2  
At4g22280	chr4:011776672	0.0	C/11776672-11777517,11776374-11776520,11776054-11776308	AT4G22280.1  CDS  gene_syn T10I14.110, T10I14_110  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G58920.1); Has 1237 Blast hits to 1202 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1237; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22280.1p  transcript_id AT4G22280.1  protein_id AT4G22280.1p  transcript_id AT4G22280.1  
At4g22285	chr4:011781539	0.0	C/11781539-11781898,11781181-11781425,11780820-11780904,11780561-11780746,11780302-11780469,11780069-11780206,11779521-11779692,11779271-11779445,11779063-11779159	AT4G22285.1  CDS  go_component intracellular|GO:0005622||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_function zinc ion binding|GO:0008270||IEA  product ubiquitin thiolesterase/ zinc ion binding  note ubiquitin thiolesterase/ zinc ion binding; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, UBP-type (InterPro:IPR001607), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin carboxyl-terminal hydrolase family protein (TAIR:AT4G22350.1); Has 2853 Blast hits to 2457 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 1787; Fungi - 363; Plants - 246; Viruses - 0; Other Eukaryotes - 457 (source: NCBI BLink).  protein_id AT4G22285.1p  transcript_id AT4G22285.1  protein_id AT4G22285.1p  transcript_id AT4G22285.1  
At4g22290	chr4:011784954	0.0	C/11784954-11785730,11784253-11784408,11783910-11784121,11783199-11783391	AT4G22290.1  CDS  gene_syn T10I14.120, T10I14_120  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_function ubiquitin thiolesterase activity|GO:0004221||ISS  product ubiquitin thiolesterase  note ubiquitin thiolesterase; FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; BEST Arabidopsis thaliana protein match is: balbiani ring 1-related / BR1-related (TAIR:AT1G78880.1); Has 69 Blast hits to 69 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G22290.1p  transcript_id AT4G22290.1  protein_id AT4G22290.1p  transcript_id AT4G22290.1  
At4g22300	chr4:011790908	0.0	C/11790908-11791055,11790561-11790613,11790209-11790332,11789931-11790079,11789773-11789880,11789599-11789677,11788970-11789311,11788568-11788620,11788251-11788374,11787999-11788120,11787794-11787901,11787560-11787658	AT4G22300.1  CDS  gene_syn SOBER1, SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1, T10I14.130, T10I14_130  gene SOBER1  function encodes a carboxylesterase that inhibits AvrBsT-triggered phenotypes in Arabidopsis  go_process defense response, incompatible interaction|GO:0009814|17293566|IMP  go_process regulation of plant-type hypersensitive response|GO:0010363|17293566|IMP  go_function carboxylesterase activity|GO:0004091|17293566|IDA  go_function carboxylesterase activity|GO:0004091||ISS  product SOBER1 (SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1); carboxylesterase  note SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1 (SOBER1); FUNCTIONS IN: carboxylesterase activity; INVOLVED IN: defense response, incompatible interaction, regulation of plant-type hypersensitive response; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase/carboxylesterase (InterPro:IPR003140); BEST Arabidopsis thaliana protein match is: phospholipase/carboxylesterase family protein (TAIR:AT3G15650.1); Has 3596 Blast hits to 1992 proteins in 564 species: Archae - 4; Bacteria - 1575; Metazoa - 606; Fungi - 312; Plants - 191; Viruses - 0; Other Eukaryotes - 908 (source: NCBI BLink).  protein_id AT4G22300.1p  transcript_id AT4G22300.1  protein_id AT4G22300.1p  transcript_id AT4G22300.1  
At4g22310	chr4:011791443	0.0	W/11791443-11791497,11791898-11791996,11792172-11792224,11792377-11792450,11792593-11792638	AT4G22310.1  CDS  go_component mitochondrion|GO:0005739|15276431|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0041 (InterPro:IPR005336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14695.1); Has 630 Blast hits to 630 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 302; Fungi - 164; Plants - 96; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT4G22310.1p  transcript_id AT4G22310.1  protein_id AT4G22310.1p  transcript_id AT4G22310.1  
At4g22320	chr4:011794243	0.0	C/11794243-11794596,11793605-11793817,11793129-11793278	AT4G22320.1  CDS  gene_syn T10I14.150, T10I14_150  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55210.1); Has 9841 Blast hits to 5053 proteins in 396 species: Archae - 29; Bacteria - 556; Metazoa - 3805; Fungi - 755; Plants - 226; Viruses - 158; Other Eukaryotes - 4312 (source: NCBI BLink).  protein_id AT4G22320.1p  transcript_id AT4G22320.1  protein_id AT4G22320.1p  transcript_id AT4G22320.1  
At4g22330	chr4:011798483	0.0	W/11798483-11798736,11799036-11799549	AT4G22330.1  CDS  gene_syn ATCES1, T10I14.160, T10I14_160  gene ATCES1  function Encodes AtCES1 for Acyl-CoA independent ceramide synthase.  go_process ceramide metabolic process|GO:0006672||IEA  go_function hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides|GO:0016811||IEA  go_component endoplasmic reticulum|GO:0005783|18643979|IDA  go_component membrane|GO:0016020|11152613|ISS  go_function catalytic activity|GO:0003824||ISS  product ATCES1; catalytic/ hydrolase, acting on carbon-nitrogen (but not peptide) bonds, in linear amides  note ATCES1; FUNCTIONS IN: catalytic activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; INVOLVED IN: ceramide metabolic process; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alkaline phytoceramidase (InterPro:IPR008901); Has 335 Blast hits to 335 proteins in 94 species: Archae - 0; Bacteria - 2; Metazoa - 170; Fungi - 113; Plants - 26; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT4G22330.1p  transcript_id AT4G22330.1  protein_id AT4G22330.1p  transcript_id AT4G22330.1  
At4g22340	chr4:011802018	0.0	C/11802018-11802172,11801719-11801870,11801465-11801606,11801182-11801338,11801055-11801102,11800874-11800960,11800660-11800788,11800521-11800577,11800323-11800406,11800150-11800236	AT4G22340.2  CDS  gene_syn T10I14.170, T10I14_170  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_function transferase activity, transferring phosphorus-containing groups|GO:0016772||IEA  go_function phosphatidate cytidylyltransferase activity|GO:0004605||ISS  product phosphatidate cytidylyltransferase, putative / CDP-diglyceride synthetase, putative  note phosphatidate cytidylyltransferase, putative / CDP-diglyceride synthetase, putative; FUNCTIONS IN: phosphatidate cytidylyltransferase activity, transferase activity, transferring phosphorus-containing groups; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidate cytidylyltransferase (InterPro:IPR000374); BEST Arabidopsis thaliana protein match is: ATCDS1; phosphatidate cytidylyltransferase (TAIR:AT1G62430.1); Has 4461 Blast hits to 4459 proteins in 1349 species: Archae - 0; Bacteria - 2547; Metazoa - 161; Fungi - 89; Plants - 81; Viruses - 0; Other Eukaryotes - 1583 (source: NCBI BLink).  protein_id AT4G22340.2p  transcript_id AT4G22340.2  protein_id AT4G22340.2p  transcript_id AT4G22340.2  
At4g22340	chr4:011802475	0.0	C/11802475-11802549,11802018-11802271,11801719-11801870,11801465-11801606,11801182-11801338,11801055-11801102,11800874-11800960,11800660-11800788,11800521-11800577,11800323-11800406,11800150-11800236	AT4G22340.1  CDS  gene_syn T10I14.170, T10I14_170  go_component membrane|GO:0016020||IEA  go_process phospholipid biosynthetic process|GO:0008654||IEA  go_function transferase activity, transferring phosphorus-containing groups|GO:0016772||IEA  go_function phosphatidate cytidylyltransferase activity|GO:0004605||ISS  product phosphatidate cytidylyltransferase, putative / CDP-diglyceride synthetase, putative  note phosphatidate cytidylyltransferase, putative / CDP-diglyceride synthetase, putative; FUNCTIONS IN: phosphatidate cytidylyltransferase activity, transferase activity, transferring phosphorus-containing groups; INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidate cytidylyltransferase (InterPro:IPR000374), Phosphatidate cytidylyltransferase, eukaryota (InterPro:IPR016720); BEST Arabidopsis thaliana protein match is: ATCDS1; phosphatidate cytidylyltransferase (TAIR:AT1G62430.1); Has 4468 Blast hits to 4466 proteins in 1349 species: Archae - 0; Bacteria - 2547; Metazoa - 164; Fungi - 89; Plants - 81; Viruses - 0; Other Eukaryotes - 1587 (source: NCBI BLink).  protein_id AT4G22340.1p  transcript_id AT4G22340.1  protein_id AT4G22340.1p  transcript_id AT4G22340.1  
At4g22340	chr4:011802475	0.0	C/11802475-11802621,11802018-11802271,11801719-11801870,11801465-11801606,11801182-11801338,11801055-11801102,11800874-11800960,11800660-11800788,11800521-11800577,11800323-11800406,11800150-11800236	AT4G22340.3  CDS  gene_syn T10I14.170, T10I14_170  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_function transferase activity, transferring phosphorus-containing groups|GO:0016772||IEA  go_function phosphatidate cytidylyltransferase activity|GO:0004605||ISS  product phosphatidate cytidylyltransferase, putative / CDP-diglyceride synthetase, putative  note phosphatidate cytidylyltransferase, putative / CDP-diglyceride synthetase, putative; FUNCTIONS IN: phosphatidate cytidylyltransferase activity, transferase activity, transferring phosphorus-containing groups; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidate cytidylyltransferase (InterPro:IPR000374), Phosphatidate cytidylyltransferase, eukaryota (InterPro:IPR016720); BEST Arabidopsis thaliana protein match is: ATCDS1; phosphatidate cytidylyltransferase (TAIR:AT1G62430.1); Has 4466 Blast hits to 4464 proteins in 1348 species: Archae - 0; Bacteria - 2545; Metazoa - 164; Fungi - 89; Plants - 81; Viruses - 0; Other Eukaryotes - 1587 (source: NCBI BLink).  protein_id AT4G22340.3p  transcript_id AT4G22340.3  protein_id AT4G22340.3p  transcript_id AT4G22340.3  
At4g22350	chr4:011806837	0.0	C/11806837-11806939,11806586-11806749,11806204-11806448,11805842-11805926,11805583-11805768,11805322-11805489,11805090-11805227,11804549-11804720,11804281-11804455,11804073-11804169	AT4G22350.1  CDS  gene_syn T10I14.180, T10I14_180  go_component intracellular|GO:0005622||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_function ubiquitin thiolesterase activity|GO:0004221||ISS  product ubiquitin carboxyl-terminal hydrolase family protein  note ubiquitin carboxyl-terminal hydrolase family protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, UBP-type (InterPro:IPR001607), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin thiolesterase/ zinc ion binding (TAIR:AT4G22285.1); Has 2784 Blast hits to 2384 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 1738; Fungi - 374; Plants - 244; Viruses - 0; Other Eukaryotes - 428 (source: NCBI BLink).  protein_id AT4G22350.1p  transcript_id AT4G22350.1  protein_id AT4G22350.1p  transcript_id AT4G22350.1  
At4g22360	chr4:011807811	0.0	W/11807811-11808358,11808664-11808775,11808865-11809036,11809125-11809327,11809538-11809660	AT4G22360.1  CDS  gene_syn T10I14.190, T10I14_190  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SWIB complex BAF60b domain-containing protein  note SWIB complex BAF60b domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 (InterPro:IPR003121), DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: SWIB complex BAF60b domain-containing protein (TAIR:AT3G19080.1); Has 1341 Blast hits to 971 proteins in 185 species: Archae - 0; Bacteria - 229; Metazoa - 293; Fungi - 295; Plants - 306; Viruses - 0; Other Eukaryotes - 218 (source: NCBI BLink).  protein_id AT4G22360.1p  transcript_id AT4G22360.1  protein_id AT4G22360.1p  transcript_id AT4G22360.1  
At4g22370	chr4:011810852	0.0	C/11810852-11810957,11810544-11810625,11810408-11810459,11810169-11810321	AT4G22370.1  CDS  gene_syn T10I14.210, T10I14_210  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 5 Blast hits to 5 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22370.1p  transcript_id AT4G22370.1  protein_id AT4G22370.1p  transcript_id AT4G22370.1  
At4g22380	chr4:011812695	0.0	C/11812695-11812922,11812041-11812199	AT4G22380.1  CDS  go_component nucleolus|GO:0005730|15496452|IDA  go_process ribosome biogenesis|GO:0042254||IEA  go_function RNA binding|GO:0003723||ISS  product ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein  note ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; FUNCTIONS IN: RNA binding; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group-like nuclear protein (InterPro:IPR002415), Ribosomal protein L7A/RS6 family (InterPro:IPR018492), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038), Ribosomal protein L7Ae conserved site (InterPro:IPR004037); BEST Arabidopsis thaliana protein match is: ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (TAIR:AT5G20160.1); Has 1361 Blast hits to 1361 proteins in 295 species: Archae - 226; Bacteria - 7; Metazoa - 464; Fungi - 191; Plants - 162; Viruses - 0; Other Eukaryotes - 311 (source: NCBI BLink).  protein_id AT4G22380.1p  transcript_id AT4G22380.1  protein_id AT4G22380.1p  transcript_id AT4G22380.1  
At4g22390	chr4:011813906	0.0	C/11813906-11815074,11813757-11813796	AT4G22390.1  CDS  gene_syn F7K2.3, F7K2_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G12560.2); Has 662 Blast hits to 662 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 662; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22390.1p  transcript_id AT4G22390.1  protein_id AT4G22390.1p  transcript_id AT4G22390.1  
At4g22400	chr4:011816829	0.0	W/11816829-11817812	AT4G22400.1  CDS  gene_syn F7K2.5, F7K2_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G18320.2); Has 21 Blast hits to 21 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22400.1p  transcript_id AT4G22400.1  protein_id AT4G22400.1p  transcript_id AT4G22400.1  
At4g22410	chr4:011819876	0.0	C/11819876-11820135,11819530-11819614,11819269-11819454,11819009-11819176,11818776-11818913,11818213-11818398	AT4G22410.1  CDS  gene_syn F7K2.7, F7K2_7  go_component intracellular|GO:0005622||IEA  go_component endomembrane system|GO:0012505||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_function ubiquitin thiolesterase activity|GO:0004221||ISS  product ubiquitin carboxyl-terminal hydrolase family protein  note ubiquitin carboxyl-terminal hydrolase family protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, UBP-type (InterPro:IPR001607), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin thiolesterase/ zinc ion binding (TAIR:AT4G22285.1); Has 1482 Blast hits to 1466 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 969; Fungi - 208; Plants - 132; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).  protein_id AT4G22410.1p  transcript_id AT4G22410.1  protein_id AT4G22410.1p  transcript_id AT4G22410.1  
At4g22415	chr4:011820325	0.0	C/11820325-11825184	AT4G22415.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.8e-181 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At4g22420	chr4:011826317	0.0	C/11826317-11826432,11825802-11826134,11825614-11825719	AT4G22420.1  CDS  gene_syn F7K2.9, F7K2_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: ubiquitin thiolesterase/ zinc ion binding (TAIR:AT4G22285.1); Has 58 Blast hits to 58 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 2; Plants - 35; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT4G22420.1p  transcript_id AT4G22420.1  protein_id AT4G22420.1p  transcript_id AT4G22420.1  
At4g22430	chr4:011827774	0.0	W/11827774-11827922,11828008-11828905	AT4G22430.1  CDS  gene_syn F7K2.10, F7K2_10  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G26010.1); Has 42 Blast hits to 42 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22430.1p  transcript_id AT4G22430.1  protein_id AT4G22430.1p  transcript_id AT4G22430.1  
At4g22440	chr4:011831024	0.0	W/11831024-11831093,11831545-11831596,11832124-11832268	AT4G22440.1  CDS  gene_syn F7K2.20, F7K2_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22440.1p  transcript_id AT4G22440.1  protein_id AT4G22440.1p  transcript_id AT4G22440.1  
At4g22450	chr4:011835592	0.0	W/11835592-11837644	AT4G22450.1  mRNA_TE_gene  pseudo  gene_syn F7K2.30, F7K2_30  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G08200.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAW57796.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057)  
At4g22460	chr4:011839160	0.0	C/11839160-11839561	AT4G22460.1  CDS  gene_syn F7K2.40, F7K2_40  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: ELP (EXTENSIN-LIKE PROTEIN); lipid binding (TAIR:AT1G12090.1); Has 525 Blast hits to 521 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 525; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22460.1p  transcript_id AT4G22460.1  protein_id AT4G22460.1p  transcript_id AT4G22460.1  
At4g22470	chr4:011840316	0.0	C/11840316-11841443	AT4G22470.1  CDS  gene_syn F7K2.50, F7K2_50  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, sepal, hypocotyl, stamen; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22505.1); Has 187379 Blast hits to 63672 proteins in 2011 species: Archae - 631; Bacteria - 37438; Metazoa - 74500; Fungi - 21440; Plants - 22529; Viruses - 6213; Other Eukaryotes - 24628 (source: NCBI BLink).  protein_id AT4G22470.1p  transcript_id AT4G22470.1  protein_id AT4G22470.1p  transcript_id AT4G22470.1  
At4g22485	chr4:011844506	0.0	C/11844506-11846476	AT4G22485.1  CDS  function Encodes a Protease inhibitor/seed storage/LTP family protein  go_process lipid transport|GO:0006869||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lipid transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22505.1); Has 993 Blast hits to 981 proteins in 163 species: Archae - 0; Bacteria - 56; Metazoa - 249; Fungi - 73; Plants - 530; Viruses - 21; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT4G22485.1p  transcript_id AT4G22485.1  protein_id AT4G22485.1p  transcript_id AT4G22485.1  
At4g22490	chr4:011849933	0.0	C/11849933-11850295	AT4G22490.1  CDS  gene_syn F7K2.70, F7K2_70  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT4G12470.1); Has 495 Blast hits to 491 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 495; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22490.1p  transcript_id AT4G22490.1  protein_id AT4G22490.1p  transcript_id AT4G22490.1  
At4g22505	chr4:011851363	0.0	C/11851363-11852955	AT4G22505.1  CDS  go_process lipid transport|GO:0006869||IEA  product unknown protein  note INVOLVED IN: lipid transport; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22485.1).  protein_id AT4G22505.1p  transcript_id AT4G22505.1  protein_id AT4G22505.1p  transcript_id AT4G22505.1  
At4g22513	chr4:011854868	0.0	W/11854868-11855215	AT4G22513.1  CDS  function Encodes a Protease inhibitor/seed storage/LTP family protein  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  product unknown protein  note INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22517.1); Has 416 Blast hits to 416 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 416; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22513.1p  transcript_id AT4G22513.1  protein_id AT4G22513.1p  transcript_id AT4G22513.1  
At4g22517	chr4:011856810	0.0	W/11856810-11857157	AT4G22517.1  CDS  function Encodes a Protease inhibitor/seed storage/LTP family protein  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  product unknown protein  note INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22513.1); Has 398 Blast hits to 398 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 398; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22517.1p  transcript_id AT4G22517.1  protein_id AT4G22517.1p  transcript_id AT4G22517.1  
At4g22510	chr4:011856854	0.0	C/11856854-11857072,11855048-11855206	AT4G22510.1  CDS  gene_syn F7K2.90, F7K2_90  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, leaf; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22510.1p  transcript_id AT4G22510.1  protein_id AT4G22510.1p  transcript_id AT4G22510.1  
At4g22520	chr4:011858614	0.0	W/11858614-11858970	AT4G22520.1  CDS  gene_syn F7K2.100, F7K2_100  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22513.1); Has 434 Blast hits to 430 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 434; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22520.1p  transcript_id AT4G22520.1  protein_id AT4G22520.1p  transcript_id AT4G22520.1  
At4g22530	chr4:011859980	0.0	C/11859980-11860129,11859247-11859882	AT4G22530.1  CDS  gene_syn F7K2.110, F7K2_110  go_process metabolic process|GO:0008152||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  product embryo-abundant protein-related  note embryo-abundant protein-related; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: embryo-abundant protein-related (TAIR:AT5G10830.1); Has 712 Blast hits to 708 proteins in 256 species: Archae - 2; Bacteria - 390; Metazoa - 65; Fungi - 87; Plants - 109; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT4G22530.1p  transcript_id AT4G22530.1  protein_id AT4G22530.1p  transcript_id AT4G22530.1  
At4g22540	chr4:011863761	0.0	C/11863761-11863886,11863167-11863236,11862720-11863075,11862477-11862632,11862210-11862377,11861976-11862116,11861639-11861869,11861420-11861533,11860969-11861139	AT4G22540.2  CDS  gene_syn F7K2.120, F7K2_120, ORP2A, OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2A  gene ORP2A  go_component cellular_component|GO:0005575||ND  go_process signal transduction|GO:0007165|15358268|ISS  go_process steroid metabolic process|GO:0008202||ISS  go_function oxysterol binding|GO:0008142||ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product ORP2A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2A); oxysterol binding / phosphoinositide binding  note OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2A (ORP2A); FUNCTIONS IN: phosphoinositide binding, oxysterol binding; INVOLVED IN: steroid metabolic process, signal transduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Oxysterol-binding protein (InterPro:IPR000648); BEST Arabidopsis thaliana protein match is: ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B); oxysterol binding (TAIR:AT4G12460.1); Has 1718 Blast hits to 1677 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 954; Fungi - 384; Plants - 149; Viruses - 0; Other Eukaryotes - 231 (source: NCBI BLink).  protein_id AT4G22540.2p  transcript_id AT4G22540.2  protein_id AT4G22540.2p  transcript_id AT4G22540.2  
At4g22540	chr4:011863761	0.0	C/11863761-11863886,11863167-11863236,11862720-11863075,11862477-11862632,11862210-11862377,11861976-11862116,11861639-11861869,11861420-11861533,11860969-11861139	AT4G22540.3  CDS  gene_syn F7K2.120, F7K2_120, ORP2A, OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2A  gene ORP2A  go_component cellular_component|GO:0005575||ND  go_process signal transduction|GO:0007165|15358268|ISS  go_process steroid metabolic process|GO:0008202||ISS  go_function oxysterol binding|GO:0008142||ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product ORP2A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2A); oxysterol binding / phosphoinositide binding  note OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2A (ORP2A); FUNCTIONS IN: phosphoinositide binding, oxysterol binding; INVOLVED IN: steroid metabolic process, signal transduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Oxysterol-binding protein (InterPro:IPR000648); BEST Arabidopsis thaliana protein match is: ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B); oxysterol binding (TAIR:AT4G12460.1); Has 1718 Blast hits to 1677 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 954; Fungi - 384; Plants - 149; Viruses - 0; Other Eukaryotes - 231 (source: NCBI BLink).  protein_id AT4G22540.3p  transcript_id AT4G22540.3  protein_id AT4G22540.3p  transcript_id AT4G22540.3  
At4g22540	chr4:011865713	0.0	C/11865713-11866108,11863761-11864123,11863167-11863236,11862720-11863075,11862477-11862632,11862210-11862377,11861976-11862116,11861639-11861869,11861420-11861533,11860969-11861139	AT4G22540.1  CDS  gene_syn F7K2.120, F7K2_120, ORP2A, OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2A  gene ORP2A  go_component cellular_component|GO:0005575||ND  go_process signal transduction|GO:0007165|15358268|ISS  go_process steroid metabolic process|GO:0008202||ISS  go_function oxysterol binding|GO:0008142||ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product ORP2A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2A); oxysterol binding / phosphoinositide binding  note OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2A (ORP2A); FUNCTIONS IN: phosphoinositide binding, oxysterol binding; INVOLVED IN: steroid metabolic process, signal transduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Oxysterol-binding protein (InterPro:IPR000648), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B); oxysterol binding (TAIR:AT4G12460.1); Has 1987 Blast hits to 1807 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 1146; Fungi - 443; Plants - 163; Viruses - 0; Other Eukaryotes - 235 (source: NCBI BLink).  protein_id AT4G22540.1p  transcript_id AT4G22540.1  protein_id AT4G22540.1p  transcript_id AT4G22540.1  
At4g22545	chr4:011876815	0.0	C/11876815-11877667	AT4G22545.1  pseudogenic_transcript  pseudo  function pseudogene of unknown protein  note expressed protein  
At4g22550	chr4:011878255	0.0	C/11878255-11878896	AT4G22550.1  CDS  gene_syn F7K2.130, F7K2_130  go_component membrane|GO:0016020||IEA  go_function catalytic activity|GO:0003824||IEA  go_process biological_process|GO:0008150||ND  product phosphatidic acid phosphatase-related / PAP2-related  note phosphatidic acid phosphatase-related / PAP2-related; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); Has 629 Blast hits to 629 proteins in 246 species: Archae - 16; Bacteria - 372; Metazoa - 131; Fungi - 6; Plants - 24; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT4G22550.1p  transcript_id AT4G22550.1  protein_id AT4G22550.1p  transcript_id AT4G22550.1  
At4g22560	chr4:011880178	0.0	W/11880178-11880972	AT4G22560.1  CDS  gene_syn F7K2.140, F7K2_140  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12450.1); Has 106 Blast hits to 106 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22560.1p  transcript_id AT4G22560.1  protein_id AT4G22560.1p  transcript_id AT4G22560.1  
At4g22570	chr4:011885166	0.0	C/11885166-11885250,11884722-11884832,11882864-11882956,11882647-11882796,11882483-11882541,11882310-11882363	AT4G22570.1  CDS  gene_syn ADENINE PHOSPHORIBOSYL TRANSFERASE 3, APT3, F7K2.150, F7K2_150  gene APT3  function Encodes an adenine phosphoribosyltransferase (APT; EC 2.4.2.7), which is a constitutively expressed enzyme involved in the one-step salvage of adenine to AMP. APT3 has higher affinity for zeatin, isopentenyladenine and benzyladenine than APT1 but lower Vmax than APT1.  go_component cytosol|GO:0005829|12010467|IDA  go_process adenine salvage|GO:0006168|12010467|TAS  go_function adenine phosphoribosyltransferase activity|GO:0003999|12010467|IDA  go_function adenine phosphoribosyltransferase activity|GO:0003999||ISS  product APT3 (ADENINE PHOSPHORIBOSYL TRANSFERASE 3); adenine phosphoribosyltransferase  note ADENINE PHOSPHORIBOSYL TRANSFERASE 3 (APT3); FUNCTIONS IN: adenine phosphoribosyltransferase activity; INVOLVED IN: adenine salvage; LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adenine phosphoribosyl transferase (InterPro:IPR005764), Phosphoribosyltransferase (InterPro:IPR000836); BEST Arabidopsis thaliana protein match is: adenine phosphoribosyltransferase, putative (TAIR:AT4G12440.2); Has 5788 Blast hits to 5787 proteins in 1402 species: Archae - 178; Bacteria - 3164; Metazoa - 144; Fungi - 127; Plants - 102; Viruses - 0; Other Eukaryotes - 2073 (source: NCBI BLink).  protein_id AT4G22570.1p  transcript_id AT4G22570.1  protein_id AT4G22570.1p  transcript_id AT4G22570.1  
At4g22580	chr4:011889382	0.0	C/11889382-11890689	AT4G22580.1  CDS  gene_syn F7K2.160, F7K2_160  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_function catalytic activity|GO:0003824||ISS  product exostosin family protein  note exostosin family protein; FUNCTIONS IN: catalytic activity; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: exostosin family protein (TAIR:AT4G13990.1); Has 375 Blast hits to 373 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 4; Plants - 340; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT4G22580.1p  transcript_id AT4G22580.1  protein_id AT4G22580.1p  transcript_id AT4G22580.1  
At4g22590	chr4:011895114	0.0	C/11895114-11895371,11894879-11895019,11894720-11894791,11894503-11894628,11894184-11894420,11893872-11894105,11893707-11893772	AT4G22590.1  CDS  gene_syn F7K2.170, F7K2_170  go_component chloroplast|GO:0009507||IEA  go_process trehalose biosynthetic process|GO:0005992||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_process trehalose biosynthetic process|GO:0005992||ISS  go_function trehalose-phosphatase activity|GO:0004805||ISS  product trehalose-6-phosphate phosphatase, putative  note trehalose-6-phosphate phosphatase, putative; FUNCTIONS IN: catalytic activity, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: trehalose-6-phosphate phosphatase, putative (TAIR:AT4G12430.1); Has 1456 Blast hits to 1452 proteins in 520 species: Archae - 29; Bacteria - 749; Metazoa - 197; Fungi - 102; Plants - 271; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT4G22590.1p  transcript_id AT4G22590.1  protein_id AT4G22590.1p  transcript_id AT4G22590.1  
At4g22592	chr4:011895435	0.0	C/11895435-11895509	AT4G22592.1  CDS  gene_syn CPuORF27, Conserved peptide upstream open reading frame 27  gene CPuORF27  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF27 represents a conserved upstream opening reading frame relative to major ORF AT4G22590.1  product CPuORF27 (Conserved peptide upstream open reading frame 27)  note Conserved peptide upstream open reading frame 27 (CPuORF27); Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G22592.1p  transcript_id AT4G22592.1  protein_id AT4G22592.1p  transcript_id AT4G22592.1  
At4g22600	chr4:011900211	0.0	C/11900211-11901032	AT4G22600.1  CDS  gene_syn F7K2.180, F7K2_180  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 12 Blast hits to 12 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22600.1p  transcript_id AT4G22600.1  protein_id AT4G22600.1p  transcript_id AT4G22600.1  
At4g22610	chr4:011902165	0.0	C/11902165-11902533	AT4G22610.1  CDS  gene_syn F7K2.190, F7K2_190  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT4G22520.1); Has 302 Blast hits to 302 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 302; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22610.1p  transcript_id AT4G22610.1  protein_id AT4G22610.1p  transcript_id AT4G22610.1  
At4g22620	chr4:011907631	0.0	W/11907631-11908113	AT4G22620.1  CDS  gene_syn T12H17.10  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; EXPRESSED IN: cotyledon, male gametophyte, pollen tube; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT4G12410.1); Has 607 Blast hits to 600 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 606; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G22620.1p  transcript_id AT4G22620.1  protein_id AT4G22620.1p  transcript_id AT4G22620.1  
At4g22630	chr4:011909368	0.0	W/11909368-11909716,11909806-11909945	AT4G22630.1  CDS  gene_syn T12H17.20  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to membrane; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22666.2); Has 19 Blast hits to 19 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22630.1p  transcript_id AT4G22630.1  protein_id AT4G22630.1p  transcript_id AT4G22630.1  
At4g22635	chr4:011910289	0.0	W/11910289-11910362	AT4G22635.1  tRNA  gene_syn 67141.TRNA-ASN-1, 67142.TRNA-ASN-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asn (anticodon: GTT)  transcript_id AT4G22635.1  
At4g22640	chr4:011911658	0.0	W/11911658-11912008	AT4G22640.1  CDS  gene_syn T12H17.30  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: male gametophyte, root; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22666.2); Has 19 Blast hits to 19 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22640.1p  transcript_id AT4G22640.1  protein_id AT4G22640.1p  transcript_id AT4G22640.1  
At4g22650	chr4:011913557	0.0	W/11913557-11914027	AT4G22650.1  CDS  gene_syn T12H17.40  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22640.1); Has 19 Blast hits to 19 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22650.1p  transcript_id AT4G22650.1  protein_id AT4G22650.1p  transcript_id AT4G22650.1  
At4g22660	chr4:011914981	0.0	C/11914981-11916171	AT4G22660.1  CDS  gene_syn T12H17.50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G22165.1); Has 297 Blast hits to 286 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22660.1p  transcript_id AT4G22660.1  protein_id AT4G22660.1p  transcript_id AT4G22660.1  
At4g22666	chr4:011917161	0.0	W/11917161-11917497,11917588-11917733	AT4G22666.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT4G22630.1); Has 44 Blast hits to 44 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22666.1p  transcript_id AT4G22666.1  protein_id AT4G22666.1p  transcript_id AT4G22666.1  
At4g22666	chr4:011917161	0.0	W/11917161-11917497,11917591-11917733	AT4G22666.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT4G22630.1); Has 44 Blast hits to 44 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22666.2p  transcript_id AT4G22666.2  protein_id AT4G22666.2p  transcript_id AT4G22666.2  
At4g22670	chr4:011918236	0.0	W/11918236-11918345,11918717-11918771,11918860-11919015,11919105-11919273,11919353-11919417,11919496-11919636,11919731-11919847,11919986-11920342,11920430-11920487,11920574-11920671	AT4G22670.1  CDS  gene_syn Arabidopsis thaliana Hsp70-interacting protein 1, AtHip1, T12H17.60, T12H17_60  gene AtHip1  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function binding|GO:0005488||IEA  product AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1); binding  note Arabidopsis thaliana Hsp70-interacting protein 1 (AtHip1); FUNCTIONS IN: binding; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: ATTDX (TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN); oxidoreductase, acting on sulfur group of donors, disulfide as acceptor / protein binding (TAIR:AT3G17880.2); Has 104992 Blast hits to 32574 proteins in 1569 species: Archae - 323; Bacteria - 31113; Metazoa - 46021; Fungi - 5704; Plants - 7149; Viruses - 884; Other Eukaryotes - 13798 (source: NCBI BLink).  protein_id AT4G22670.1p  transcript_id AT4G22670.1  protein_id AT4G22670.1p  transcript_id AT4G22670.1  
At4g22680	chr4:011923818	0.0	C/11923818-11924080,11922789-11923326	AT4G22680.1  CDS  gene_syn AtMYB85, MYB85, T12H17.70, T12H17_70, myb domain protein 85  gene MYB85  function Encodes a putative transcription factor (MYB85).  go_component nucleus|GO:0005634|18952777|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function transcription activator activity|GO:0016563|18952777|IDA  product MYB85 (myb domain protein 85); DNA binding / transcription activator/ transcription factor  note myb domain protein 85 (MYB85); FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of secondary cell wall thickening; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB42 (myb domain protein 42); transcription factor (TAIR:AT4G12350.1); Has 6136 Blast hits to 5723 proteins in 360 species: Archae - 0; Bacteria - 0; Metazoa - 635; Fungi - 242; Plants - 3763; Viruses - 4; Other Eukaryotes - 1492 (source: NCBI BLink).  protein_id AT4G22680.1p  transcript_id AT4G22680.1  protein_id AT4G22680.1p  transcript_id AT4G22680.1  
At4g22690	chr4:011929847	0.0	W/11929847-11931520	AT4G22690.1  CDS  gene_syn CYP706A1, T12H17.80, T12H17_80  gene CYP706A1  function member of CYP706A  go_component cell wall|GO:0005618|16287169|IDA  go_component mitochondrion|GO:0005739|15276431|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP706A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP706A1; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: mitochondrion, cell wall, plasma membrane; EXPRESSED IN: guard cell, flower, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP706A2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G22710.1); Has 23639 Blast hits to 23487 proteins in 1224 species: Archae - 23; Bacteria - 1973; Metazoa - 10418; Fungi - 4455; Plants - 5911; Viruses - 3; Other Eukaryotes - 856 (source: NCBI BLink).  protein_id AT4G22690.1p  transcript_id AT4G22690.1  protein_id AT4G22690.1p  transcript_id AT4G22690.1  
At4g22700	chr4:011933301	0.0	W/11933301-11933879	AT4G22700.1  CDS  gene_syn LBD32, LOB DOMAIN-CONTAINING PROTEIN 32, T12H17.90, T12H17_90  gene LBD32  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product LBD32 (LOB DOMAIN-CONTAINING PROTEIN 32)  note LOB DOMAIN-CONTAINING PROTEIN 32 (LBD32); INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD35 (LOB DOMAIN-CONTAINING PROTEIN 35) (TAIR:AT5G35900.1); Has 455 Blast hits to 453 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 455; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22700.1p  transcript_id AT4G22700.1  protein_id AT4G22700.1p  transcript_id AT4G22700.1  
At4g22710	chr4:011935038	0.0	W/11935038-11936618	AT4G22710.1  CDS  gene_syn CYP706A2, T12H17.100, T12H17_100  gene CYP706A2  function member of CYP706A  go_component plasma membrane|GO:0005886|17644812|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP706A2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP706A2; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: flower, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP706A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G22690.1); Has 23664 Blast hits to 23502 proteins in 1224 species: Archae - 23; Bacteria - 1971; Metazoa - 10440; Fungi - 4458; Plants - 5914; Viruses - 3; Other Eukaryotes - 855 (source: NCBI BLink).  protein_id AT4G22710.1p  transcript_id AT4G22710.1  protein_id AT4G22710.1p  transcript_id AT4G22710.1  
At4g22720	chr4:011937467	0.0	W/11937467-11938024,11938110-11938265,11938370-11938717	AT4G22720.1  CDS  gene_syn T12H17.110, T12H17_110  go_process proteolysis|GO:0006508||IEA  go_function endopeptidase activity|GO:0004175||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process proteolysis|GO:0006508||ISS  product glycoprotease M22 family protein  note glycoprotease M22 family protein; FUNCTIONS IN: endopeptidase activity, metalloendopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M22, O-sialoglycoprotein endopeptidase (InterPro:IPR009180), Peptidase M22, glycoprotease, subgroup (InterPro:IPR017861), Peptidase M22, glycoprotease (InterPro:IPR000905); BEST Arabidopsis thaliana protein match is: glycoprotease M22 family protein (TAIR:AT2G45270.1); Has 6754 Blast hits to 6730 proteins in 1648 species: Archae - 187; Bacteria - 2972; Metazoa - 216; Fungi - 190; Plants - 122; Viruses - 0; Other Eukaryotes - 3067 (source: NCBI BLink).  protein_id AT4G22720.1p  transcript_id AT4G22720.1  protein_id AT4G22720.1p  transcript_id AT4G22720.1  
At4g22720	chr4:011937467	0.0	W/11937467-11938024,11938110-11938265,11938370-11938717	AT4G22720.2  CDS  gene_syn T12H17.110, T12H17_110  go_process proteolysis|GO:0006508||IEA  go_function endopeptidase activity|GO:0004175||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process proteolysis|GO:0006508||ISS  product glycoprotease M22 family protein  note glycoprotease M22 family protein; FUNCTIONS IN: endopeptidase activity, metalloendopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M22, O-sialoglycoprotein endopeptidase (InterPro:IPR009180), Peptidase M22, glycoprotease, subgroup (InterPro:IPR017861), Peptidase M22, glycoprotease (InterPro:IPR000905); BEST Arabidopsis thaliana protein match is: glycoprotease M22 family protein (TAIR:AT2G45270.1); Has 6754 Blast hits to 6730 proteins in 1648 species: Archae - 187; Bacteria - 2972; Metazoa - 216; Fungi - 190; Plants - 122; Viruses - 0; Other Eukaryotes - 3067 (source: NCBI BLink).  protein_id AT4G22720.2p  transcript_id AT4G22720.2  protein_id AT4G22720.2p  transcript_id AT4G22720.2  
At4g22730	chr4:011941384	0.0	W/11941384-11941813,11941902-11942162,11942250-11943143,11943215-11943696	AT4G22730.1  CDS  gene_syn T12H17.120, T12H17_120  go_component plasma membrane|GO:0005886|14506206|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT5G51560.1); Has 92018 Blast hits to 58265 proteins in 1500 species: Archae - 38; Bacteria - 4684; Metazoa - 30142; Fungi - 3109; Plants - 44115; Viruses - 172; Other Eukaryotes - 9758 (source: NCBI BLink).  protein_id AT4G22730.1p  transcript_id AT4G22730.1  protein_id AT4G22730.1p  transcript_id AT4G22730.1  
At4g22740	chr4:011945118	0.0	C/11945118-11945565,11944773-11945026,11944602-11944682,11944442-11944517,11944264-11944347,11944050-11944177	AT4G22740.1  CDS  gene_syn T12H17.1  go_component plasma membrane|GO:0005886|17317660|IDA  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45380.2); Has 5661 Blast hits to 3163 proteins in 401 species: Archae - 2; Bacteria - 765; Metazoa - 2796; Fungi - 431; Plants - 986; Viruses - 17; Other Eukaryotes - 664 (source: NCBI BLink).  protein_id AT4G22740.1p  transcript_id AT4G22740.1  protein_id AT4G22740.1p  transcript_id AT4G22740.1  
At4g22740	chr4:011945118	0.0	C/11945118-11945565,11944773-11945026,11944602-11944682,11944442-11944517,11944264-11944347,11944050-11944177	AT4G22740.2  CDS  gene_syn T12H17.1  go_component plasma membrane|GO:0005886|17317660|IDA  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45380.2); Has 5661 Blast hits to 3163 proteins in 401 species: Archae - 2; Bacteria - 765; Metazoa - 2796; Fungi - 431; Plants - 986; Viruses - 17; Other Eukaryotes - 664 (source: NCBI BLink).  protein_id AT4G22740.2p  transcript_id AT4G22740.2  protein_id AT4G22740.2p  transcript_id AT4G22740.2  
At4g22745	chr4:011948395	0.0	C/11948395-11948514,11947421-11947915	AT4G22745.1  CDS  gene_syn MBD1  gene MBD1  function Protein containing methyl-CpG-binding domain.  go_component nucleus|GO:0005634||IEA  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  go_function methyl-CpG binding|GO:0008327|12787239|ISS  go_function DNA demethylase activity|GO:0051747|12787239|IDA  product MBD1; DNA binding / DNA demethylase/ methyl-CpG binding  note MBD1; FUNCTIONS IN: DNA demethylase activity, methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: MBD4; DNA binding / DNA demethylase/ methyl-CpG binding (TAIR:AT3G63030.1); Has 64 Blast hits to 63 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22745.1p  transcript_id AT4G22745.1  protein_id AT4G22745.1p  transcript_id AT4G22745.1  
At4g22750	chr4:011951147	0.0	C/11951147-11951335,11950399-11950612,11950220-11950311,11949985-11950114,11949802-11949887,11949635-11949697,11949366-11949500	AT4G22750.1  CDS  gene_syn T12H17.2  go_component endomembrane system|GO:0012505||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger (DHHC type) family protein  note zinc finger (DHHC type) family protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: zinc finger (DHHC type) family protein (TAIR:AT3G60800.1); Has 3975 Blast hits to 3973 proteins in 184 species: Archae - 0; Bacteria - 0; Metazoa - 1952; Fungi - 525; Plants - 394; Viruses - 0; Other Eukaryotes - 1104 (source: NCBI BLink).  protein_id AT4G22750.1p  transcript_id AT4G22750.1  protein_id AT4G22750.1p  transcript_id AT4G22750.1  
At4g22750	chr4:011951147	0.0	C/11951147-11951335,11950881-11950918,11950684-11950711,11950399-11950612,11950220-11950311,11949985-11950114,11949802-11949887,11949635-11949697,11949366-11949500	AT4G22750.2  CDS  gene_syn T12H17.2  go_component endomembrane system|GO:0012505||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger (DHHC type) family protein  note zinc finger (DHHC type) family protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: zinc finger (DHHC type) family protein (TAIR:AT3G60800.1).  protein_id AT4G22750.2p  transcript_id AT4G22750.2  protein_id AT4G22750.2p  transcript_id AT4G22750.2  
At4g22753	chr4:011953286	0.0	C/11953286-11953609,11952679-11953001,11952340-11952487,11952187-11952222,11952019-11952063	AT4G22753.1  CDS  gene_syn ATSMO1, ATSMO1-3, SMO1, SMO1-3, STEROL 4-ALPHA METHYL OXIDASE 1-3, STEROL 4-ALPHA-METHYL-OXIDASE 1, STEROL C4-METHYL OXIDASE 1  gene SMO1-3  function Encodes a member of the SMO1 family of sterol 4alpha-methyl oxidases.  go_component endoplasmic reticulum|GO:0005783||IEA  go_process fatty acid biosynthetic process|GO:0006633||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||ISS  go_function 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha-methyl oxidase activity|GO:0080064|14653780|NAS  product SMO1-3 (STEROL 4-ALPHA METHYL OXIDASE 1-3); 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha-methyl oxidase/ catalytic  note STEROL 4-ALPHA METHYL OXIDASE 1-3 (SMO1-3); FUNCTIONS IN: 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha-methyl oxidase activity, catalytic activity; INVOLVED IN: oxidation reduction, fatty acid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: SMO1-2 (STEROL C4-METHYL OXIDASE 1-2); 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase/ catalytic (TAIR:AT4G22756.1); Has 1682 Blast hits to 1679 proteins in 275 species: Archae - 0; Bacteria - 260; Metazoa - 388; Fungi - 476; Plants - 250; Viruses - 2; Other Eukaryotes - 306 (source: NCBI BLink).  protein_id AT4G22753.1p  transcript_id AT4G22753.1  protein_id AT4G22753.1p  transcript_id AT4G22753.1  
At4g22754	chr4:011954741	0.0	C/11954741-11954813	AT4G22754.1  tRNA  gene_syn 67142.TRNA-LYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Lys (anticodon: CTT)  transcript_id AT4G22754.1  
At4g22756	chr4:011956360	0.0	C/11956360-11956695,11955959-11956281,11955470-11955617,11955344-11955376,11955124-11955183	AT4G22756.1  CDS  gene_syn ATSMO1, ATSMO1-2, SMO1, SMO1-2, STEROL 4-ALPHA-METHYL-OXIDASE 1, STEROL C4-METHYL OXIDASE 1, STEROL C4-METHYL OXIDASE 1-2  gene SMO1-2  function Encodes a member of the SMO1 family of sterol 4alpha-methyl oxidases. More specifically functions as a 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha- methyl oxidase.  go_component endoplasmic reticulum|GO:0005783||IEA  go_process sterol biosynthetic process|GO:0016126|14653780|IMP  go_function C-4 methylsterol oxidase activity|GO:0000254|14653780|IMP  go_function C-4 methylsterol oxidase activity|GO:0000254|14653780|ISS  go_function catalytic activity|GO:0003824||ISS  go_function 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha-methyl oxidase activity|GO:0080064|14653780|NAS  product SMO1-2 (STEROL C4-METHYL OXIDASE 1-2); 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase/ catalytic  note STEROL C4-METHYL OXIDASE 1-2 (SMO1-2); FUNCTIONS IN: C-4 methylsterol oxidase activity, 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha-methyl oxidase activity, catalytic activity; INVOLVED IN: sterol biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: SMO1-1 (STEROL-4ALPHA-METHYL OXIDASE 1-1); 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase/ catalytic (TAIR:AT4G12110.1); Has 1506 Blast hits to 1503 proteins in 251 species: Archae - 0; Bacteria - 209; Metazoa - 388; Fungi - 446; Plants - 224; Viruses - 2; Other Eukaryotes - 237 (source: NCBI BLink).  protein_id AT4G22756.1p  transcript_id AT4G22756.1  protein_id AT4G22756.1p  transcript_id AT4G22756.1  
At4g22760	chr4:011958477	0.0	W/11958477-11958821,11959118-11959322,11959687-11959889,11960499-11962245,11962701-11962870	AT4G22760.1  CDS  gene_syn T12H17.150, T12H17_150  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: CRR4 (CHLORORESPIRATORY REDUCTION 4) (TAIR:AT2G45350.1); Has 14012 Blast hits to 5163 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 77; Fungi - 72; Plants - 13558; Viruses - 0; Other Eukaryotes - 303 (source: NCBI BLink).  protein_id AT4G22760.1p  transcript_id AT4G22760.1  protein_id AT4G22760.1p  transcript_id AT4G22760.1  
At4g22770	chr4:011965025	0.0	C/11965025-11965439,11964661-11964728,11964445-11964576,11963879-11964268	AT4G22770.1  CDS  gene_syn T12H17.160, T12H17_160  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product DNA-binding family protein  note DNA-binding family protein; FUNCTIONS IN: DNA binding; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding, conserved site (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: DNA-binding family protein (TAIR:AT4G12080.1); Has 554 Blast hits to 548 proteins in 75 species: Archae - 0; Bacteria - 59; Metazoa - 26; Fungi - 29; Plants - 423; Viruses - 8; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT4G22770.1p  transcript_id AT4G22770.1  protein_id AT4G22770.1p  transcript_id AT4G22770.1  
At4g22780	chr4:011970895	0.0	C/11970895-11970956,11970321-11970366,11970090-11970204,11969932-11969999,11969176-11969847,11968696-11969082	AT4G22780.1  CDS  gene_syn ACR7, T12H17.170, T12H17_170  gene ACR7  function Member of a family of ACT domain containing proteins . ACT domains are involved in amino acid binding .  go_process metabolic process|GO:0008152||IEA  go_component cytosol|GO:0005829|12481063|ISS  go_function amino acid binding|GO:0016597|12481063|ISS  product ACR7; amino acid binding  note ACR7; FUNCTIONS IN: amino acid binding; INVOLVED IN: metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: ACR8; amino acid binding (TAIR:AT1G12420.1); Has 1614 Blast hits to 1181 proteins in 333 species: Archae - 0; Bacteria - 874; Metazoa - 0; Fungi - 0; Plants - 327; Viruses - 0; Other Eukaryotes - 413 (source: NCBI BLink).  protein_id AT4G22780.1p  transcript_id AT4G22780.1  protein_id AT4G22780.1p  transcript_id AT4G22780.1  
At4g22785	chr4:011974941	0.0	W/11974941-11975021	AT4G22785.1  tRNA  gene_syn 67142.TRNA-LYS-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Lys (anticodon: CTT)  transcript_id AT4G22785.1  
At4g22790	chr4:011975153	0.0	C/11975153-11976628	AT4G22790.1  CDS  gene_syn T12H17.180, T12H17_180  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: ZF14; antiporter/ drug transporter/ transporter (TAIR:AT1G58340.1); Has 4326 Blast hits to 4248 proteins in 948 species: Archae - 36; Bacteria - 2505; Metazoa - 122; Fungi - 210; Plants - 683; Viruses - 0; Other Eukaryotes - 770 (source: NCBI BLink).  protein_id AT4G22790.1p  transcript_id AT4G22790.1  protein_id AT4G22790.1p  transcript_id AT4G22790.1  
At4g22800	chr4:011983027	0.0	C/11983027-11983071,11979074-11979142,11978005-11978163	AT4G22800.1  CDS  gene_syn T12H17.190, T12H17_190  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22800.1p  transcript_id AT4G22800.1  protein_id AT4G22800.1p  transcript_id AT4G22800.1  
At4g22810	chr4:011984432	0.0	W/11984432-11985406	AT4G22810.1  CDS  gene_syn T12H17.200, T12H17_200  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DNA-binding protein-related  note DNA-binding protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: DNA-binding protein-related (TAIR:AT4G12050.1); Has 474 Blast hits to 472 proteins in 38 species: Archae - 0; Bacteria - 4; Metazoa - 34; Fungi - 2; Plants - 424; Viruses - 2; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT4G22810.1p  transcript_id AT4G22810.1  protein_id AT4G22810.1p  transcript_id AT4G22810.1  
At4g22820	chr4:011987871	0.0	C/11987871-11988401	AT4G22820.1  CDS  gene_syn F7H19.10  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product zinc finger (AN1-like) family protein  note zinc finger (AN1-like) family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: zinc finger (AN1-like) family protein (TAIR:AT1G12440.2); Has 766 Blast hits to 761 proteins in 109 species: Archae - 2; Bacteria - 0; Metazoa - 378; Fungi - 2; Plants - 273; Viruses - 6; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT4G22820.1p  transcript_id AT4G22820.1  protein_id AT4G22820.1p  transcript_id AT4G22820.1  
At4g22820	chr4:011987871	0.0	C/11987871-11988401	AT4G22820.2  CDS  gene_syn F7H19.10  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product zinc finger (AN1-like) family protein  note zinc finger (AN1-like) family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: zinc finger (AN1-like) family protein (TAIR:AT1G12440.2); Has 766 Blast hits to 761 proteins in 109 species: Archae - 2; Bacteria - 0; Metazoa - 378; Fungi - 2; Plants - 273; Viruses - 6; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT4G22820.2p  transcript_id AT4G22820.2  protein_id AT4G22820.2p  transcript_id AT4G22820.2  
At4g22830	chr4:011991006	0.0	C/11991006-11991325,11990656-11990734,11990513-11990581,11990296-11990409	AT4G22830.1  CDS  gene_syn F7H19.1  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 258 Blast hits to 256 proteins in 77 species: Archae - 0; Bacteria - 125; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).  protein_id AT4G22830.1p  transcript_id AT4G22830.1  protein_id AT4G22830.1p  transcript_id AT4G22830.1  
At4g22840	chr4:011993514	0.0	C/11993514-11993676,11993320-11993405,11992932-11993056,11992641-11992834,11992311-11992563,11991960-11992213,11991784-11991866,11991636-11991707	AT4G22840.1  CDS  gene_syn F7H19.20  go_component membrane|GO:0016020||IEA  go_process sodium ion transport|GO:0006814||IEA  go_component membrane|GO:0016020||ISS  go_process sodium ion transport|GO:0006814||ISS  go_function transporter activity|GO:0005215||ISS  go_function bile acid:sodium symporter activity|GO:0008508||ISS  product bile acid:sodium symporter family protein  note bile acid:sodium symporter family protein; FUNCTIONS IN: transporter activity, bile acid:sodium symporter activity; INVOLVED IN: sodium ion transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Bile acid:sodium symporter (InterPro:IPR002657); BEST Arabidopsis thaliana protein match is: bile acid:sodium symporter family protein (TAIR:AT4G12030.2); Has 2570 Blast hits to 2568 proteins in 443 species: Archae - 24; Bacteria - 852; Metazoa - 337; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 1208 (source: NCBI BLink).  protein_id AT4G22840.1p  transcript_id AT4G22840.1  protein_id AT4G22840.1p  transcript_id AT4G22840.1  
At4g22850	chr4:011994194	0.0	W/11994194-11994445,11994776-11995012,11995286-11995503,11995758-11995815,11995896-11995945,11996030-11996048	AT4G22850.2  CDS  gene_syn F7H19.30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12000.1).  protein_id AT4G22850.2p  transcript_id AT4G22850.2  protein_id AT4G22850.2p  transcript_id AT4G22850.2  
At4g22850	chr4:011994194	0.0	W/11994194-11994445,11994776-11995012,11995286-11995503,11995758-11995941	AT4G22850.1  CDS  gene_syn F7H19.30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12000.1); Has 1331 Blast hits to 1328 proteins in 349 species: Archae - 4; Bacteria - 600; Metazoa - 103; Fungi - 64; Plants - 162; Viruses - 0; Other Eukaryotes - 398 (source: NCBI BLink).  protein_id AT4G22850.1p  transcript_id AT4G22850.1  protein_id AT4G22850.1p  transcript_id AT4G22850.1  
At4g22860	chr4:011997735	0.0	W/11997735-11997909,11998116-11998274,11998415-11998501,11998736-11998868,11998961-11999072,11999234-11999284,11999378-11999475,11999559-11999634,11999729-11999791,11999887-11999961,12000088-12000146,12000263-12000341,12000421-12000486,12000590-12000652,12000747-12000809,12000899-12000943,12001035-12001141,12001263-12001281	AT4G22860.1  CDS  gene_syn F7H19.40, F7H19_40  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11990.1); Has 69 Blast hits to 62 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 2; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22860.1p  transcript_id AT4G22860.1  protein_id AT4G22860.1p  transcript_id AT4G22860.1  
At4g22860	chr4:011997745	0.0	W/11997745-11997895,11998116-11998274,11998415-11998501,11998736-11998868,11998961-11999072,11999234-11999284,11999378-11999475,11999559-11999634,11999729-11999791,11999887-11999961,12000088-12000146,12000263-12000341,12000421-12000486,12000590-12000652,12000747-12000809,12000899-12000943,12001035-12001141,12001263-12001281	AT4G22860.2  CDS  gene_syn F7H19.40, F7H19_40  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11990.1); Has 64 Blast hits to 60 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 2; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22860.2p  transcript_id AT4G22860.2  protein_id AT4G22860.2p  transcript_id AT4G22860.2  
At4g22870	chr4:012001884	0.0	C/12001884-12002222	AT4G22870.1  CDS  gene_syn F7H19.50, F7H19_50  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  product leucoanthocyanidin dioxygenase, putative / anthocyanidin synthase, putative  note leucoanthocyanidin dioxygenase, putative / anthocyanidin synthase, putative; FUNCTIONS IN: oxidoreductase activity; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: LDOX (LEUCOANTHOCYANIDIN DIOXYGENASE); leucocyanidin oxygenase (TAIR:AT4G22880.2); Has 3145 Blast hits to 3143 proteins in 401 species: Archae - 0; Bacteria - 174; Metazoa - 11; Fungi - 59; Plants - 2626; Viruses - 0; Other Eukaryotes - 275 (source: NCBI BLink).  protein_id AT4G22870.1p  transcript_id AT4G22870.1  protein_id AT4G22870.1p  transcript_id AT4G22870.1  
At4g22870	chr4:012002703	0.0	C/12002703-12002801,12002560-12002601,12001884-12002204	AT4G22870.2  CDS  gene_syn F7H19.50, F7H19_50  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  product leucoanthocyanidin dioxygenase, putative / anthocyanidin synthase, putative  note leucoanthocyanidin dioxygenase, putative / anthocyanidin synthase, putative; FUNCTIONS IN: oxidoreductase activity; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: LDOX (LEUCOANTHOCYANIDIN DIOXYGENASE); leucocyanidin oxygenase (TAIR:AT4G22880.2).  protein_id AT4G22870.2p  transcript_id AT4G22870.2  protein_id AT4G22870.2p  transcript_id AT4G22870.2  
At4g22880	chr4:012005563	0.0	C/12005563-12006059,12004905-12005478	AT4G22880.1  CDS  gene_syn ANS, ANTHOCYANIDIN SYNTHASE, F7H19.60, F7H19_60, LDOX, LEUCOANTHOCYANIDIN DIOXYGENASE, TANNIN DEFICIENT SEED 4, TDS4, TT18  gene LDOX  function encodes leucoanthocyanidin dioxygenase, which is involved in proanthocyanin biosynthesis. Mutant analysis suggests that this gene is also involved in vacuole formation.  go_component cellular_component|GO:0005575||ND  go_process vacuole organization|GO:0007033|12940955|IMP  go_process response to wounding|GO:0009611|16021335|IEP  go_process anthocyanin biosynthetic process|GO:0009718|16702218|TAS  go_process response to sucrose stimulus|GO:0009744|16384906|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16021335|IEP  go_process proanthocyanidin biosynthetic process|GO:0010023|12940955|IMP  go_function leucocyanidin oxygenase activity|GO:0050589|9112784|ISS  product LDOX (LEUCOANTHOCYANIDIN DIOXYGENASE); leucocyanidin oxygenase  note LEUCOANTHOCYANIDIN DIOXYGENASE (LDOX); FUNCTIONS IN: leucocyanidin oxygenase activity; INVOLVED IN: in 6 processes; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: FLS (FLAVONOL SYNTHASE); flavonol synthase (TAIR:AT5G08640.1); Has 5750 Blast hits to 5722 proteins in 660 species: Archae - 0; Bacteria - 666; Metazoa - 91; Fungi - 562; Plants - 3090; Viruses - 0; Other Eukaryotes - 1341 (source: NCBI BLink).  protein_id AT4G22880.1p  transcript_id AT4G22880.1  protein_id AT4G22880.1p  transcript_id AT4G22880.1  
At4g22880	chr4:012005563	0.0	C/12005563-12006059,12004905-12005478	AT4G22880.2  CDS  gene_syn ANS, ANTHOCYANIDIN SYNTHASE, F7H19.60, F7H19_60, LDOX, LEUCOANTHOCYANIDIN DIOXYGENASE, TANNIN DEFICIENT SEED 4, TDS4, TT18  gene LDOX  function encodes leucoanthocyanidin dioxygenase, which is involved in proanthocyanin biosynthesis. Mutant analysis suggests that this gene is also involved in vacuole formation.  go_component cellular_component|GO:0005575||ND  go_process vacuole organization|GO:0007033|12940955|IMP  go_process response to wounding|GO:0009611|16021335|IEP  go_process anthocyanin biosynthetic process|GO:0009718|16702218|TAS  go_process response to sucrose stimulus|GO:0009744|16384906|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16021335|IEP  go_process proanthocyanidin biosynthetic process|GO:0010023|12940955|IMP  go_function leucocyanidin oxygenase activity|GO:0050589|9112784|ISS  product LDOX (LEUCOANTHOCYANIDIN DIOXYGENASE); leucocyanidin oxygenase  note LEUCOANTHOCYANIDIN DIOXYGENASE (LDOX); FUNCTIONS IN: leucocyanidin oxygenase activity; INVOLVED IN: in 6 processes; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: FLS (FLAVONOL SYNTHASE); flavonol synthase (TAIR:AT5G08640.1); Has 5750 Blast hits to 5722 proteins in 660 species: Archae - 0; Bacteria - 666; Metazoa - 91; Fungi - 562; Plants - 3090; Viruses - 0; Other Eukaryotes - 1341 (source: NCBI BLink).  protein_id AT4G22880.2p  transcript_id AT4G22880.2  protein_id AT4G22880.2p  transcript_id AT4G22880.2  
At4g22890	chr4:012007157	0.0	W/12007157-12007355,12007782-12007894,12007993-12008089,12008182-12008282,12008378-12008434,12008519-12008595,12008689-12008851,12008931-12009028,12009106-12009175	AT4G22890.1  CDS  gene_syn F7H19.70, F7H19_70, PGR5-LIKE A, PGRL1A  gene PGR5-LIKE A  function Encodes PGRL1A, a transmembrane protein present in thylakoids. PGRL1A has a highly homologous isoform PGRL1B encoded by At4g11960. Plants lacking PGRL1 show perturbation of cyclic electron flow, similar to PGR5-deficient plants. PGRL1 and PGR5 interact physically and associate with PSI (photosystem I).  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component thylakoid|GO:0009579|18243102|IDA  go_process photosynthetic electron transport in photosystem I|GO:0009773|18243102|IGI  go_process photosynthesis|GO:0015979|18243102|IGI  go_function molecular_function|GO:0003674||ND  product PGR5-LIKE A  note PGR5-LIKE A; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthetic electron transport in photosystem I, photosynthesis; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PGRL1B (PGR5-Like B) (TAIR:AT4G11960.1); Has 62 Blast hits to 62 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G22890.1p  transcript_id AT4G22890.1  protein_id AT4G22890.1p  transcript_id AT4G22890.1  
At4g22890	chr4:012007157	0.0	W/12007157-12007355,12007782-12007894,12007993-12008089,12008182-12008282,12008378-12008434,12008519-12008595,12008689-12008851,12008931-12009028,12009106-12009175	AT4G22890.2  CDS  gene_syn F7H19.70, F7H19_70, PGR5-LIKE A, PGRL1A  gene PGR5-LIKE A  function Encodes PGRL1A, a transmembrane protein present in thylakoids. PGRL1A has a highly homologous isoform PGRL1B encoded by At4g11960. Plants lacking PGRL1 show perturbation of cyclic electron flow, similar to PGR5-deficient plants. PGRL1 and PGR5 interact physically and associate with PSI (photosystem I).  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18243102|IDA  go_process photosynthetic electron transport in photosystem I|GO:0009773|18243102|IGI  go_process photosynthesis|GO:0015979|18243102|IGI  go_function molecular_function|GO:0003674||ND  product PGR5-LIKE A  note PGR5-LIKE A; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthetic electron transport in photosystem I, photosynthesis; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PGRL1B (PGR5-Like B) (TAIR:AT4G11960.1); Has 62 Blast hits to 62 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G22890.2p  transcript_id AT4G22890.2  protein_id AT4G22890.2p  transcript_id AT4G22890.2  
At4g22890	chr4:012007157	0.0	W/12007157-12007355,12007782-12007894,12007993-12008089,12008182-12008282,12008378-12008434,12008519-12008595,12008689-12008851,12008931-12009028,12009106-12009175	AT4G22890.3  CDS  gene_syn F7H19.70, F7H19_70, PGR5-LIKE A, PGRL1A  gene PGR5-LIKE A  function Encodes PGRL1A, a transmembrane protein present in thylakoids. PGRL1A has a highly homologous isoform PGRL1B encoded by At4g11960. Plants lacking PGRL1 show perturbation of cyclic electron flow, similar to PGR5-deficient plants. PGRL1 and PGR5 interact physically and associate with PSI (photosystem I).  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18243102|IDA  go_process photosynthetic electron transport in photosystem I|GO:0009773|18243102|IGI  go_process photosynthesis|GO:0015979|18243102|IGI  go_function molecular_function|GO:0003674||ND  product PGR5-LIKE A  note PGR5-LIKE A; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthetic electron transport in photosystem I, photosynthesis; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PGRL1B (PGR5-Like B) (TAIR:AT4G11960.1); Has 62 Blast hits to 62 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G22890.3p  transcript_id AT4G22890.3  protein_id AT4G22890.3p  transcript_id AT4G22890.3  
At4g22890	chr4:012007157	0.0	W/12007157-12007355,12007788-12007894,12007993-12008089,12008182-12008282,12008378-12008434,12008519-12008595,12008689-12008851,12008931-12009028,12009106-12009175	AT4G22890.5  CDS  gene_syn F7H19.70, F7H19_70, PGR5-LIKE A, PGRL1A  gene PGR5-LIKE A  function Encodes PGRL1A, a transmembrane protein present in thylakoids. PGRL1A has a highly homologous isoform PGRL1B encoded by At4g11960. Plants lacking PGRL1 show perturbation of cyclic electron flow, similar to PGR5-deficient plants. PGRL1 and PGR5 interact physically and associate with PSI (photosystem I).  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18243102|IDA  go_process photosynthetic electron transport in photosystem I|GO:0009773|18243102|IGI  go_process photosynthesis|GO:0015979|18243102|IGI  go_function molecular_function|GO:0003674||ND  product PGR5-LIKE A  note PGR5-LIKE A; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthetic electron transport in photosystem I, photosynthesis; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PGRL1B (PGR5-Like B) (TAIR:AT4G11960.1); Has 62 Blast hits to 62 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G22890.5p  transcript_id AT4G22890.5  protein_id AT4G22890.5p  transcript_id AT4G22890.5  
At4g22890	chr4:012007157	0.0	W/12007157-12007355,12007791-12007894,12007993-12008089,12008182-12008282,12008378-12008434,12008519-12008595,12008689-12008851,12008931-12009028,12009106-12009175	AT4G22890.4  CDS  gene_syn F7H19.70, F7H19_70, PGR5-LIKE A, PGRL1A  gene PGR5-LIKE A  function Encodes PGRL1A, a transmembrane protein present in thylakoids. PGRL1A has a highly homologous isoform PGRL1B encoded by At4g11960. Plants lacking PGRL1 show perturbation of cyclic electron flow, similar to PGR5-deficient plants. PGRL1 and PGR5 interact physically and associate with PSI (photosystem I).  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18243102|IDA  go_process photosynthetic electron transport in photosystem I|GO:0009773|18243102|IGI  go_process photosynthesis|GO:0015979|18243102|IGI  go_function molecular_function|GO:0003674||ND  product PGR5-LIKE A  note PGR5-LIKE A; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthetic electron transport in photosystem I, photosynthesis; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PGRL1B (PGR5-Like B) (TAIR:AT4G11960.1); Has 62 Blast hits to 62 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G22890.4p  transcript_id AT4G22890.4  protein_id AT4G22890.4p  transcript_id AT4G22890.4  
At4g22900	chr4:012010221	0.0	W/12010221-12011252	AT4G22900.1  CDS  gene_syn F7H19.80, F7H19_80  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1191 (InterPro:IPR010605); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11950.1); Has 65 Blast hits to 65 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G22900.1p  transcript_id AT4G22900.1  protein_id AT4G22900.1p  transcript_id AT4G22900.1  
At4g22910	chr4:012012743	0.0	W/12012743-12013240,12013857-12013979,12014073-12014177,12014590-12014832,12014917-12015111,12015199-12015300,12015382-12015513,12015610-12015663	AT4G22910.1  CDS  gene_syn F7H19.90, F7H19_90, FIZZY-RELATED 2, FZR2  gene FZR2  go_component chloroplast|GO:0009507||IEA  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_process signal transduction|GO:0007165||ISS  go_process trichome branching|GO:0010091|19074624|IMP  go_process cell growth|GO:0016049|19074624|IMP  go_process DNA endoreduplication|GO:0042023|19074624|IMP  go_function signal transducer activity|GO:0004871||ISS  product FZR2 (FIZZY-RELATED 2); signal transducer  note FIZZY-RELATED 2 (FZR2); FUNCTIONS IN: signal transducer activity; INVOLVED IN: trichome branching, signal transduction, DNA endoreduplication, cell growth; LOCATED IN: chloroplast, heterotrimeric G-protein complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: CCS52A2; signal transducer (TAIR:AT4G11920.1); Has 32185 Blast hits to 17091 proteins in 521 species: Archae - 40; Bacteria - 4571; Metazoa - 14163; Fungi - 6386; Plants - 2781; Viruses - 0; Other Eukaryotes - 4244 (source: NCBI BLink).  protein_id AT4G22910.1p  transcript_id AT4G22910.1  protein_id AT4G22910.1p  transcript_id AT4G22910.1  
At4g22920	chr4:012017829	0.0	C/12017829-12017969,12017538-12017711,12017176-12017343,12016776-12017099	AT4G22920.1  CDS  gene_syn ATNYE1, F7H19.100, F7H19_100, NON-YELLOWING 1, NYE1  gene NYE1  function Similar to the tomato senescence-inducible chloroplast stay-green protein 1. It is upregulated during maximal senescence in the Arabidopsis life cycle, especially in senescent leaves.  go_component chloroplast|GO:0009507||IEA  go_process chlorophyll catabolic process|GO:0015996|17204643|IMP  go_function molecular_function|GO:0003674||ND  product NYE1 (NON-YELLOWING 1)  note NON-YELLOWING 1 (NYE1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: chlorophyll catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11910.1); Has 130 Blast hits to 128 proteins in 45 species: Archae - 0; Bacteria - 50; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G22920.1p  transcript_id AT4G22920.1  protein_id AT4G22920.1p  transcript_id AT4G22920.1  
At4g22930	chr4:012019315	0.0	W/12019315-12019344,12019473-12019621,12019814-12019995,12020111-12020247,12020317-12020482,12020564-12020680,12020767-12020927,12021009-12021200	AT4G22930.1  CDS  gene_syn DHOASE, DIHYDROOROTASE, F7H19.110, F7H19_110, PYR4, PYRIMIDIN 4  gene PYR4  function Encodes dihydroorotase (PYR4).  go_component chloroplast|GO:0009507|18431481|IDA  go_process  de novo  pyrimidine base biosynthetic process|GO:0006207||IEA  go_process pyrimidine base biosynthetic process|GO:0019856||IEA  go_function dihydroorotase activity|GO:0004151||IEA  go_function hydrolase activity|GO:0016787||IEA  go_function hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides|GO:0016812||IEA  go_function dihydroorotase activity|GO:0004151||ISS  product PYR4 (PYRIMIDIN 4); dihydroorotase/ hydrolase/ hydrolase, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides  note PYRIMIDIN 4 (PYR4); FUNCTIONS IN: hydrolase activity, dihydroorotase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides; INVOLVED IN:  de novo  pyrimidine base biosynthetic process, pyrimidine base biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dihydroorotase, conserved site (InterPro:IPR002195), Dihydroorotase homodimeric type (InterPro:IPR004721), Amidohydrolase 1 (InterPro:IPR006680); Has 2424 Blast hits to 2424 proteins in 706 species: Archae - 22; Bacteria - 1377; Metazoa - 1; Fungi - 94; Plants - 28; Viruses - 0; Other Eukaryotes - 902 (source: NCBI BLink).  protein_id AT4G22930.1p  transcript_id AT4G22930.1  protein_id AT4G22930.1p  transcript_id AT4G22930.1  
At4g22940	chr4:012023144	0.0	C/12023144-12023467,12022781-12023068,12022375-12022692,12022064-12022291,12021763-12021981	AT4G22940.1  CDS  gene_syn F7H19.120, F7H19_120  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G44290.4); Has 87223 Blast hits to 86111 proteins in 2927 species: Archae - 33; Bacteria - 7204; Metazoa - 38443; Fungi - 8043; Plants - 16956; Viruses - 394; Other Eukaryotes - 16150 (source: NCBI BLink).  protein_id AT4G22940.1p  transcript_id AT4G22940.1  protein_id AT4G22940.1p  transcript_id AT4G22940.1  
At4g22950	chr4:012027240	0.0	C/12027240-12027421,12025368-12025446,12025191-12025252,12025004-12025103,12024362-12024403,12024196-12024237,12023946-12024098	AT4G22950.1  CDS  gene_syn AGAMOUS-LIKE 19, AGL19, F7H19.130, F7H19_130, GL19  gene AGL19  function MADS-box protein AGL19  go_component nucleus|GO:0005634|16778081|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|11115127|ISS  go_process vernalization response|GO:0010048|16778081|IMP  go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|16778081|IMP  go_function transcription factor activity|GO:0003700|11115127|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL19 (AGAMOUS-LIKE 19); transcription factor  note AGAMOUS-LIKE 19 (AGL19); FUNCTIONS IN: transcription factor activity; INVOLVED IN: vernalization response, regulation of transcription, DNA-dependent, regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: LP.04 four leaves visible, seedling growth; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGL14 (agamous-like 14); DNA binding / transcription factor (TAIR:AT4G11880.1); Has 5311 Blast hits to 5307 proteins in 696 species: Archae - 0; Bacteria - 11; Metazoa - 567; Fungi - 224; Plants - 4408; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT4G22950.1p  transcript_id AT4G22950.1  protein_id AT4G22950.1p  transcript_id AT4G22950.1  
At4g22960	chr4:012030121	0.0	W/12030121-12030250,12030471-12030645,12030740-12030827,12030909-12031476,12031561-12031677,12031770-12031824,12031915-12031996,12032141-12032221,12032324-12032407,12032491-12032534,12032658-12032721,12033019-12033105	AT4G22960.1  CDS  gene_syn F7H19.140, F7H19_140  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF544 (InterPro:IPR007518); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11860.1); Has 534 Blast hits to 302 proteins in 113 species: Archae - 0; Bacteria - 19; Metazoa - 234; Fungi - 166; Plants - 43; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT4G22960.1p  transcript_id AT4G22960.1  protein_id AT4G22960.1p  transcript_id AT4G22960.1  
At4g22970	chr4:012042959	0.0	C/12042959-12043572,12042695-12042875,12042491-12042598,12042180-12042314,12041624-12042087,12041152-12041257,12040914-12041039,12040459-12040752,12040272-12040388,12039875-12040096,12039681-12039791,12039457-12039591,12039003-12039350,12038826-12038915,12038452-12038715,12038249-12038372,12037391-12038140,12036796-12037027,12036546-12036648,12036252-12036449,12036089-12036144,12035773-12036002,12035460-12035700,12034901-12035312,12034538-12034777,12034368-12034455,12033703-12034256	AT4G22970.1  CDS  gene_syn AESP, ARABIDOPSIS HOMOLOG OF SEPARASE, F7H19.150, F7H19_150  gene AESP  function Putative separase gene, homologous to human and mouse separase protein. It contains a predicted 2Fe2S-ferredoxin domain that is not present in the proteins of other organisms. Also contains a putative EF-hand calcium binding domain. Mutant seeds exhibited embryo arrest at the globular stage. The endosperm also exhibited a weak titan-like phenotype. Transgenic plants expressing AESP RNA interference (RNAi) from the meiosis-specific DMC1 promoter exhibited alterations in chromosome segregation during meiosis I and II that resulted in polyads containing from one to eight microspores. AESP plays an essential role in embryo development and is required for the removal of cohesin from meiotic chromosomes.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process embryonic development ending in seed dormancy|GO:0009793|16582011|IMP  go_process endosperm development|GO:0009960|16582011|IMP  go_process positive regulation of sister chromatid cohesion|GO:0045876|16582011|IMP  go_process meiotic chromosome separation|GO:0051307|16582011|IMP  go_function peptidase activity|GO:0008233|16582011|ISS  go_function peptidase activity|GO:0008233||ISS  product AESP (ARABIDOPSIS HOMOLOG OF SEPARASE); peptidase  note ARABIDOPSIS HOMOLOG OF SEPARASE (AESP); FUNCTIONS IN: peptidase activity; INVOLVED IN: embryonic development ending in seed dormancy, meiotic chromosome separation, endosperm development, positive regulation of sister chromatid cohesion; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C50, separase (InterPro:IPR005314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28550.1); Has 286 Blast hits to 265 proteins in 126 species: Archae - 0; Bacteria - 2; Metazoa - 84; Fungi - 91; Plants - 52; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT4G22970.1p  transcript_id AT4G22970.1  protein_id AT4G22970.1p  transcript_id AT4G22970.1  
At4g22980	chr4:012043974	0.0	C/12043974-12045653	AT4G22980.1  CDS  gene_syn F7H19.160, F7H19_160  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: catalytic/ pyridoxal phosphate binding (TAIR:AT5G51920.1); Has 294 Blast hits to 268 proteins in 91 species: Archae - 4; Bacteria - 15; Metazoa - 79; Fungi - 66; Plants - 107; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT4G22980.1p  transcript_id AT4G22980.1  protein_id AT4G22980.1p  transcript_id AT4G22980.1  
At4g22990	chr4:012050932	0.0	C/12050932-12050984,12050739-12050859,12050346-12050657,12049709-12050274,12049319-12049626,12049049-12049224,12048774-12048964,12048564-12048697,12048240-12048478	AT4G22990.1  CDS  gene_syn F7H19.170, F7H19_170  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SPX (SYG1/Pho81/XPR1) domain-containing protein  note SPX (SYG1/Pho81/XPR1) domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SPX, N-terminal (InterPro:IPR004331), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: SPX (SYG1/Pho81/XPR1) domain-containing protein (TAIR:AT4G11810.1); Has 1969 Blast hits to 1968 proteins in 640 species: Archae - 45; Bacteria - 1186; Metazoa - 136; Fungi - 247; Plants - 160; Viruses - 0; Other Eukaryotes - 195 (source: NCBI BLink).  protein_id AT4G22990.1p  transcript_id AT4G22990.1  protein_id AT4G22990.1p  transcript_id AT4G22990.1  
At4g23000	chr4:012055241	0.0	W/12055241-12055539,12055620-12055845,12055944-12056192,12056285-12056400,12056509-12056607,12056715-12056802,12056908-12057137,12057228-12057412,12057531-12057730,12057971-12058303,12058404-12058505,12058780-12059077,12059235-12059383,12059462-12059752,12059840-12060028	AT4G23000.1  CDS  gene_syn F7H19.181, F7H19_181  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product hydrolase/ protein serine/threonine phosphatase  note hydrolase/ protein serine/threonine phosphatase; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: hydrolase/ protein serine/threonine phosphatase (TAIR:AT4G11800.1); Has 87 Blast hits to 81 proteins in 30 species: Archae - 0; Bacteria - 39; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT4G23000.1p  transcript_id AT4G23000.1  protein_id AT4G23000.1p  transcript_id AT4G23000.1  
At4g23010	chr4:012062364	0.0	C/12062364-12062486,12061974-12062002,12061691-12061892,12061335-12061600,12061159-12061288,12060631-12060738,12060318-12060548	AT4G23010.2  CDS  gene_syn ATUTR2, F7H19.200, F7H19_200, UDP-GALACTOSE TRANSPORTER 2, UTR2  gene UTR2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product UDP-galactose transporter-related  note UDP-GALACTOSE TRANSPORTER 2 (UTR2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: UAA transporter (InterPro:IPR013657); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12600.1); Has 841 Blast hits to 841 proteins in 166 species: Archae - 0; Bacteria - 2; Metazoa - 495; Fungi - 117; Plants - 114; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).  protein_id AT4G23010.2p  transcript_id AT4G23010.2  protein_id AT4G23010.2p  transcript_id AT4G23010.2  
At4g23010	chr4:012062364	0.0	C/12062364-12062486,12061974-12062002,12061691-12061892,12061358-12061600,12061159-12061260,12060631-12060738,12060318-12060548	AT4G23010.1  CDS  gene_syn ATUTR2, F7H19.200, F7H19_200, UDP-GALACTOSE TRANSPORTER 2, UTR2  gene UTR2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product UDP-galactose transporter-related  note UDP-GALACTOSE TRANSPORTER 2 (UTR2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: UAA transporter (InterPro:IPR013657); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12600.1); Has 886 Blast hits to 886 proteins in 168 species: Archae - 2; Bacteria - 2; Metazoa - 508; Fungi - 137; Plants - 121; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT4G23010.1p  transcript_id AT4G23010.1  protein_id AT4G23010.1p  transcript_id AT4G23010.1  
At4g23020	chr4:012067774	0.0	C/12067774-12068442,12067064-12067160,12066331-12066842	AT4G23020.1  CDS  gene_syn F7H19.210, F7H19_210  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11780.1); Has 60 Blast hits to 60 proteins in 19 species: Archae - 0; Bacteria - 22; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 13; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT4G23020.1p  transcript_id AT4G23020.1  protein_id AT4G23020.1p  transcript_id AT4G23020.1  
At4g23030	chr4:012072857	0.0	W/12072857-12074365	AT4G23030.1  CDS  gene_syn F7H19.220, F7H19_220  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020|11152613|ISS  go_function transporter activity|GO:0005215||ISS  product MATE efflux protein-related  note MATE efflux protein-related; FUNCTIONS IN: antiporter activity, drug transporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; EXPRESSED IN: stem, male gametophyte, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: ZF14; antiporter/ drug transporter/ transporter (TAIR:AT1G58340.1); Has 6170 Blast hits to 6127 proteins in 1124 species: Archae - 128; Bacteria - 3921; Metazoa - 126; Fungi - 210; Plants - 681; Viruses - 0; Other Eukaryotes - 1104 (source: NCBI BLink).  protein_id AT4G23030.1p  transcript_id AT4G23030.1  protein_id AT4G23030.1p  transcript_id AT4G23030.1  
At4g23040	chr4:012078539	0.0	C/12078539-12078622,12077258-12077910,12076956-12077172,12076651-12076821,12076333-12076476,12076015-12076158,12075872-12075928,12075672-12075779	AT4G23040.1  CDS  gene_syn F7H19.230, F7H19_230  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product UBX domain-containing protein  note UBX domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: SAY1 (TAIR:AT4G11740.1); Has 2849 Blast hits to 2369 proteins in 288 species: Archae - 2; Bacteria - 267; Metazoa - 1170; Fungi - 422; Plants - 198; Viruses - 20; Other Eukaryotes - 770 (source: NCBI BLink).  protein_id AT4G23040.1p  transcript_id AT4G23040.1  protein_id AT4G23040.1p  transcript_id AT4G23040.1  
At4g23050	chr4:012080112	0.0	W/12080112-12080458,12080650-12081082,12081192-12081317,12081421-12081943,12082071-12082111,12082201-12082269,12082362-12082462,12082588-12082666,12082758-12082856,12082943-12083011,12083108-12083157,12083264-12083345,12083422-12083516,12083612-12083708	AT4G23050.2  CDS  gene_syn F7H19.240, F7H19_240  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process signal transduction|GO:0007165||IEA  go_process signal transduction|GO:0007165||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function signal transducer activity|GO:0004871||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, protein kinase activity, signal transducer activity; INVOLVED IN: signal transduction, protein amino acid phosphorylation, regulation of transcription, DNA-dependent; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Protein kinase, ATP binding site (InterPro:IPR017441), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G06620.1); Has 90573 Blast hits to 89352 proteins in 3493 species: Archae - 99; Bacteria - 7298; Metazoa - 40742; Fungi - 7306; Plants - 18732; Viruses - 471; Other Eukaryotes - 15925 (source: NCBI BLink).  protein_id AT4G23050.2p  transcript_id AT4G23050.2  protein_id AT4G23050.2p  transcript_id AT4G23050.2  
At4g23050	chr4:012080112	0.0	W/12080112-12080458,12080650-12081082,12081195-12081317,12081421-12081943,12082071-12082111,12082201-12082269,12082362-12082462,12082588-12082666,12082758-12082856,12082943-12083011,12083108-12083157,12083264-12083345,12083422-12083516,12083612-12083708	AT4G23050.1  CDS  gene_syn F7H19.240, F7H19_240  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process signal transduction|GO:0007165||IEA  go_process signal transduction|GO:0007165||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function signal transducer activity|GO:0004871||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, protein kinase activity, signal transducer activity; INVOLVED IN: signal transduction, protein amino acid phosphorylation, regulation of transcription, DNA-dependent; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Protein kinase, ATP binding site (InterPro:IPR017441), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G06620.1); Has 90581 Blast hits to 89360 proteins in 3492 species: Archae - 101; Bacteria - 7296; Metazoa - 40742; Fungi - 7309; Plants - 18733; Viruses - 471; Other Eukaryotes - 15929 (source: NCBI BLink).  protein_id AT4G23050.1p  transcript_id AT4G23050.1  protein_id AT4G23050.1p  transcript_id AT4G23050.1  
At4g23060	chr4:012087283	0.0	W/12087283-12087825,12089185-12089397,12089496-12089573,12089788-12090408	AT4G23060.1  CDS  gene_syn F7H19.250, F7H19_250, IQ-domain 22, IQD22  gene IQD22  go_process response to gibberellin stimulus|GO:0009739|17933900|IEP  go_function calmodulin binding|GO:0005516||ISS  product IQD22 (IQ-domain 22); calmodulin binding  note IQ-domain 22 (IQD22); FUNCTIONS IN: calmodulin binding; INVOLVED IN: response to gibberellin stimulus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); Has 549 Blast hits to 415 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 38; Fungi - 2; Plants - 383; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink).  protein_id AT4G23060.1p  transcript_id AT4G23060.1  protein_id AT4G23060.1p  transcript_id AT4G23060.1  
At4g23070	chr4:012091821	0.0	C/12091821-12092077,12091281-12091608,12090928-12091181,12090690-12090792	AT4G23070.1  CDS  gene_syn ARABIDOPSIS RHOMBOID-LIKE PROTEIN 7, ATRBL7, F7H19.260, F7H19_260  gene ATRBL7  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ATRBL7 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 7)  note ARABIDOPSIS RHOMBOID-LIKE PROTEIN 7 (ATRBL7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: root, pollen tube; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: ATRBL2 (Arabidopsis thaliana Rhomboid-like 2); serine-type endopeptidase (TAIR:AT1G63120.1); Has 3438 Blast hits to 3438 proteins in 890 species: Archae - 81; Bacteria - 1726; Metazoa - 471; Fungi - 72; Plants - 181; Viruses - 0; Other Eukaryotes - 907 (source: NCBI BLink).  protein_id AT4G23070.1p  transcript_id AT4G23070.1  protein_id AT4G23070.1p  transcript_id AT4G23070.1  
At4g23080	chr4:012096786	0.0	W/12096786-12096872,12097475-12097630,12097864-12097986,12098436-12098804	AT4G23080.1  CDS  gene_syn F7H19.270, F7H19_270  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10220.1); Has 300 Blast hits to 293 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 300; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G23080.1p  transcript_id AT4G23080.1  protein_id AT4G23080.1p  transcript_id AT4G23080.1  
At4g23090	chr4:012101371	0.0	C/12101371-12101411,12101192-12101250,12101070-12101116,12100852-12100974,12100555-12100770	AT4G23090.1  CDS  gene_syn F7H19.280, F7H19_280  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G23090.1p  transcript_id AT4G23090.1  protein_id AT4G23090.1p  transcript_id AT4G23090.1  
At4g23090	chr4:012101371	0.0	C/12101371-12101483,12101192-12101250,12101070-12101116,12100852-12100974,12100603-12100770,12100391-12100507	AT4G23090.2  CDS  gene_syn F7H19.280, F7H19_280  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G23090.2p  transcript_id AT4G23090.2  protein_id AT4G23090.2p  transcript_id AT4G23090.2  
At4g23100	chr4:012106426	0.0	C/12106426-12106751,12106105-12106255,12105828-12105935,12105658-12105750,12105395-12105478,12105207-12105275,12105046-12105116,12104893-12104961,12104545-12104638,12104329-12104418,12104157-12104237,12103970-12104062,12103779-12103883	AT4G23100.2  CDS  gene_syn ATECS1, CAD2, CADMIUM SENSITIVE 2, F7H19.290, F7H19_290, GAMMA-GLUTAMYL-CYSTEINE SYNTHETASE, GAMMA-GLUTAMYLCYSTEINE SYNTHETASE, GLUTAMATE-CYSTEINE LIGASE, GSH1, GSHA, PAD2, PHYTOALEXIN DEFICIENT 2, RML1, ROOT MERISTEMLESS 1  gene GSH1  function Encodes the enzyme glutamate-cysteine ligase catalyzing the first, and rate-limiting, step of glutathione biosynthesis. Required for cell proliferation at the root tip. Involved in susceptibility to the bacterial pathogen Pseudomonas syringae. Mutants are phytoalexin defective.  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component chloroplast|GO:0009507|15610346|IDA  go_process defense response to insect|GO:0002213|18466300|IMP  go_process glutathione biosynthetic process|GO:0006750|15180996|IDA  go_process glutathione biosynthetic process|GO:0006750|15610346|TAS  go_process glutathione biosynthetic process|GO:0006750|7770518|IMP  go_process response to heat|GO:0009408|15923322|IMP  go_process indole phytoalexin biosynthetic process|GO:0009700|8090752|IMP  go_process response to jasmonic acid stimulus|GO:0009753|16262714|IEP  go_process defense response to bacterium, incompatible interaction|GO:0009816|8090752|IMP  go_process flower development|GO:0009908|11382819|IMP  go_process response to ozone|GO:0010193|16262714|IEP  go_process glucosinolate biosynthetic process|GO:0019761|18466300|IMP  go_process defense response to bacterium|GO:0042742|19095898|IMP  go_process response to cadmium ion|GO:0046686|7770518|IMP  go_process defense response to fungus|GO:0050832|17144898|IMP  go_process callose deposition in cell wall during defense response|GO:0052544|19095898|IMP  go_function glutamate-cysteine ligase activity|GO:0004357|15180996|IDA  go_function glutamate-cysteine ligase activity|GO:0004357|17144898|IMP  go_function glutamate-cysteine ligase activity|GO:0004357|9807829|IMP  product GSH1 (GLUTAMATE-CYSTEINE LIGASE); glutamate-cysteine ligase  note ROOT MERISTEMLESS 1 (RML1); FUNCTIONS IN: glutamate-cysteine ligase activity; INVOLVED IN: in 13 processes; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamate--cysteine ligase, GCS2 (InterPro:IPR006336), Glutamate--cysteine ligase, plant (InterPro:IPR011556); Has 2113 Blast hits to 2113 proteins in 268 species: Archae - 11; Bacteria - 475; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 1550 (source: NCBI BLink).  protein_id AT4G23100.2p  transcript_id AT4G23100.2  protein_id AT4G23100.2p  transcript_id AT4G23100.2  
At4g23100	chr4:012106426	0.0	C/12106426-12106751,12106105-12106255,12105828-12105935,12105658-12105750,12105395-12105478,12105207-12105275,12105046-12105116,12104893-12104961,12104545-12104638,12104329-12104418,12104157-12104237,12103970-12104062,12103803-12103883,12103635-12103704,12103458-12103546	AT4G23100.1  CDS  gene_syn ATECS1, CAD2, CADMIUM SENSITIVE 2, F7H19.290, F7H19_290, GAMMA-GLUTAMYL-CYSTEINE SYNTHETASE, GAMMA-GLUTAMYLCYSTEINE SYNTHETASE, GLUTAMATE-CYSTEINE LIGASE, GSH1, GSHA, PAD2, PHYTOALEXIN DEFICIENT 2, RML1, ROOT MERISTEMLESS 1  gene GSH1  function Encodes the enzyme glutamate-cysteine ligase catalyzing the first, and rate-limiting, step of glutathione biosynthesis. Required for cell proliferation at the root tip. Involved in susceptibility to the bacterial pathogen Pseudomonas syringae. Mutants are phytoalexin defective.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component chloroplast|GO:0009507|15610346|IDA  go_process defense response to insect|GO:0002213|18466300|IMP  go_process glutathione biosynthetic process|GO:0006750|15180996|IDA  go_process glutathione biosynthetic process|GO:0006750|15610346|TAS  go_process glutathione biosynthetic process|GO:0006750|7770518|IMP  go_process response to heat|GO:0009408|15923322|IMP  go_process indole phytoalexin biosynthetic process|GO:0009700|8090752|IMP  go_process response to jasmonic acid stimulus|GO:0009753|16262714|IEP  go_process defense response to bacterium, incompatible interaction|GO:0009816|8090752|IMP  go_process flower development|GO:0009908|11382819|IMP  go_process response to ozone|GO:0010193|16262714|IEP  go_process glucosinolate biosynthetic process|GO:0019761|18466300|IMP  go_process defense response to bacterium|GO:0042742|19095898|IMP  go_process response to cadmium ion|GO:0046686|7770518|IMP  go_process defense response to fungus|GO:0050832|17144898|IMP  go_process callose deposition in cell wall during defense response|GO:0052544|19095898|IMP  go_function glutamate-cysteine ligase activity|GO:0004357|15180996|IDA  go_function glutamate-cysteine ligase activity|GO:0004357|17144898|IMP  go_function glutamate-cysteine ligase activity|GO:0004357|9807829|IMP  product GSH1 (GLUTAMATE-CYSTEINE LIGASE); glutamate-cysteine ligase  note GLUTAMATE-CYSTEINE LIGASE (GSH1); FUNCTIONS IN: glutamate-cysteine ligase activity; INVOLVED IN: in 13 processes; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamate--cysteine ligase, GCS2 (InterPro:IPR006336), Glutamate--cysteine ligase, plant (InterPro:IPR011556); Has 2190 Blast hits to 2190 proteins in 269 species: Archae - 13; Bacteria - 475; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 1625 (source: NCBI BLink).  protein_id AT4G23100.1p  transcript_id AT4G23100.1  protein_id AT4G23100.1p  transcript_id AT4G23100.1  
At4g23103	chr4:012108570	0.0	C/12108570-12108734	AT4G23103.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G23103.1p  transcript_id AT4G23103.1  protein_id AT4G23103.1p  transcript_id AT4G23103.1  
At4g23110	chr4:012110944	0.0	W/12110944-12111390	AT4G23110.1  CDS  gene_syn F7H19.300, F7H19_300  go_component extracellular region|GO:0005576||IEA  go_function insulin-like growth factor binding|GO:0005520||IEA  go_process biological_process|GO:0008150||ND  product insulin-like growth factor binding  note insulin-like growth factor binding; FUNCTIONS IN: insulin-like growth factor binding; INVOLVED IN: biological_process unknown; LOCATED IN: extracellular region; CONTAINS InterPro DOMAIN/s: Insulin-like growth factor binding protein (InterPro:IPR009168); Has 62 Blast hits to 56 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 25; Plants - 18; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT4G23110.1p  transcript_id AT4G23110.1  protein_id AT4G23110.1p  transcript_id AT4G23110.1  
At4g23120	chr4:012113308	0.0	W/12113308-12113490,12113943-12114002,12114080-12114805,12115410-12115523	AT4G23120.1  CDS  gene_syn F7H19.310, F7H19_310  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_function DNA binding|GO:0003677||ISS  product bromo-adjacent homology (BAH) domain-containing protein  note bromo-adjacent homology (BAH) domain-containing protein; FUNCTIONS IN: DNA binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Bromo adjacent region (InterPro:IPR001025); BEST Arabidopsis thaliana protein match is: bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT2G25120.1); Has 243 Blast hits to 243 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 72; Fungi - 0; Plants - 163; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT4G23120.1p  transcript_id AT4G23120.1  protein_id AT4G23120.1p  transcript_id AT4G23120.1  
At4g23130	chr4:012119318	0.0	C/12119318-12120134,12119102-12119242,12118910-12119031,12118610-12118820,12118298-12118535,12118072-12118225,12117688-12117996	AT4G23130.2  CDS  gene_syn CRK5, CYSTEINE-RICH RLK5, F7H19.320, F7H19_320, RECEPTOR-LIKE PROTEIN KINASE 6, RLK6  gene CRK5  function Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product CRK5 (CYSTEINE-RICH RLK5); kinase  note CYSTEINE-RICH RLK5 (CRK5); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT4G23280.1); Has 88169 Blast hits to 87030 proteins in 3116 species: Archae - 45; Bacteria - 7615; Metazoa - 38732; Fungi - 7030; Plants - 19401; Viruses - 371; Other Eukaryotes - 14975 (source: NCBI BLink).  protein_id AT4G23130.2p  transcript_id AT4G23130.2  protein_id AT4G23130.2p  transcript_id AT4G23130.2  
At4g23130	chr4:012119318	0.0	C/12119318-12120134,12119114-12119242,12118910-12119031,12118610-12118820,12118298-12118535,12118072-12118225,12117688-12117996	AT4G23130.1  CDS  gene_syn CRK5, CYSTEINE-RICH RLK5, F7H19.320, F7H19_320, RECEPTOR-LIKE PROTEIN KINASE 6, RLK6  gene CRK5  function Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product CRK5 (CYSTEINE-RICH RLK5); kinase  note CYSTEINE-RICH RLK5 (CRK5); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT4G23280.1); Has 88137 Blast hits to 87049 proteins in 3116 species: Archae - 45; Bacteria - 7614; Metazoa - 38737; Fungi - 7011; Plants - 19395; Viruses - 371; Other Eukaryotes - 14964 (source: NCBI BLink).  protein_id AT4G23130.1p  transcript_id AT4G23130.1  protein_id AT4G23130.1p  transcript_id AT4G23130.1  
At4g23140	chr4:012121397	0.0	W/12121397-12122240,12122385-12122519,12122623-12122744,12122845-12123055,12123148-12123385,12123459-12123627,12123714-12124037	AT4G23140.2  CDS  gene_syn CRK6, CYSTEINE-RICH RLK 6, F7H19.330, F7H19_330, RECEPTOR-LIKE PROTEIN KINASE  gene CRK6  function Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component plasma membrane|GO:0005886|18215111|IDA  go_function kinase activity|GO:0016301||ISS  product CRK6 (CYSTEINE-RICH RLK 6); kinase  note CYSTEINE-RICH RLK 6 (CRK6); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G23160.1); Has 86460 Blast hits to 85331 proteins in 3187 species: Archae - 51; Bacteria - 7413; Metazoa - 38174; Fungi - 6733; Plants - 19277; Viruses - 354; Other Eukaryotes - 14458 (source: NCBI BLink).  protein_id AT4G23140.2p  transcript_id AT4G23140.2  protein_id AT4G23140.2p  transcript_id AT4G23140.2  
At4g23140	chr4:012121397	0.0	W/12121397-12122240,12122385-12122519,12122623-12122744,12122845-12123055,12123148-12123385,12123477-12123627,12123714-12124037	AT4G23140.1  CDS  gene_syn CRK6, CYSTEINE-RICH RLK 6, F7H19.330, F7H19_330, RECEPTOR-LIKE PROTEIN KINASE  gene CRK6  function Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component plasma membrane|GO:0005886|18215111|IDA  go_function kinase activity|GO:0016301||ISS  product CRK6 (CYSTEINE-RICH RLK 6); kinase  note CYSTEINE-RICH RLK 6 (CRK6); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G23160.1); Has 89633 Blast hits to 88441 proteins in 3264 species: Archae - 55; Bacteria - 7799; Metazoa - 39295; Fungi - 7156; Plants - 19678; Viruses - 401; Other Eukaryotes - 15249 (source: NCBI BLink).  protein_id AT4G23140.1p  transcript_id AT4G23140.1  protein_id AT4G23140.1p  transcript_id AT4G23140.1  
At4g23150	chr4:012125731	0.0	W/12125731-12126529,12126667-12126804,12126901-12127019,12127114-12127324,12127414-12127651,12127735-12127885,12127978-12128301	AT4G23150.1  CDS  gene_syn F21P8.40, F21P8_40  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G23160.1); Has 88898 Blast hits to 87767 proteins in 3221 species: Archae - 49; Bacteria - 7966; Metazoa - 38706; Fungi - 7067; Plants - 19592; Viruses - 393; Other Eukaryotes - 15125 (source: NCBI BLink).  protein_id AT4G23150.1p  transcript_id AT4G23150.1  protein_id AT4G23150.1p  transcript_id AT4G23150.1  
At4g23160	chr4:012129485	0.0	W/12129485-12131145,12131202-12131315,12131360-12131387,12131468-12132272,12132431-12132565,12132669-12132790,12132891-12133101,12133194-12133431,12133523-12133673,12133763-12134086	AT4G23160.1  CDS  gene_syn F21P8.50, F21P8_50  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Reverse transcriptase, RNA-dependent DNA polymerase (InterPro:IPR013103), Serine/threonine protein kinase (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CRK6 (CYSTEINE-RICH RLK 6); kinase (TAIR:AT4G23140.1); Has 96605 Blast hits to 94721 proteins in 3400 species: Archae - 55; Bacteria - 7839; Metazoa - 39202; Fungi - 8084; Plants - 25290; Viruses - 399; Other Eukaryotes - 15736 (source: NCBI BLink).  protein_id AT4G23160.1p  transcript_id AT4G23160.1  protein_id AT4G23160.1p  transcript_id AT4G23160.1  
At4g23170	chr4:012135205	0.0	W/12135205-12136002	AT4G23170.1  CDS  gene_syn EP1, F21P8.60, F21P8_60  gene EP1  function Induced in response to Salicylic acid.Similar to receptor-like kinase 4 and 5. NPR1, a known positive regulator of the SA signaling pathway is responsible for the SA-dependent induction and constitutive repression of EP1 gene s basal expression.  go_component apoplast|GO:0048046|18538804|IDA  go_process response to salicylic acid stimulus|GO:0009751|16307367|IEP  go_function protein kinase activity|GO:0004672||ISS  product EP1; protein kinase  note EP1; FUNCTIONS IN: protein kinase activity; INVOLVED IN: response to salicylic acid stimulus; LOCATED IN: apoplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G23160.1); Has 943 Blast hits to 917 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 943; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G23170.1p  transcript_id AT4G23170.1  protein_id AT4G23170.1p  transcript_id AT4G23170.1  
At4g23180	chr4:012138171	0.0	W/12138171-12139005,12139126-12139263,12139347-12139465,12139559-12139769,12139862-12140099,12140236-12140386,12140463-12140780	AT4G23180.1  CDS  gene_syn CRK10, CYSTEINE-RICH RLK10, F21P8.70, F21P8_70, RLK4  gene CRK10  function Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product CRK10 (CYSTEINE-RICH RLK10); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note CYSTEINE-RICH RLK10 (CRK10); FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G23160.1); Has 89431 Blast hits to 88195 proteins in 3166 species: Archae - 51; Bacteria - 7832; Metazoa - 38847; Fungi - 7203; Plants - 19793; Viruses - 433; Other Eukaryotes - 15272 (source: NCBI BLink).  protein_id AT4G23180.1p  transcript_id AT4G23180.1  protein_id AT4G23180.1p  transcript_id AT4G23180.1  
At4g23190	chr4:012142867	0.0	C/12142867-12143710,12142653-12142784,12142424-12142545,12142125-12142335,12141808-12142045,12141574-12141733,12141197-12141493	AT4G23190.1  CDS  gene_syn AT-RLK3, CRK11, CYSTEINE-RICH RLK11, F21P8.80, F21P8_80, RECEPTOR LIKE PROTEIN KINASE 3  gene CRK11  function Encodes putative receptor-like protein kinase that is induced by the soil-borne vascular bacteria, Ralstonia solanacearum. Naming convention from Chen et al 2003 (PMID 14756307)  go_component membrane|GO:0016020|10377997|ISS  go_process response to oxidative stress|GO:0006979|10377997|IEP  go_process defense response to bacterium, incompatible interaction|GO:0009816|10377997|IEP  go_function protein kinase activity|GO:0004672|10377997|ISS  go_function kinase activity|GO:0016301||ISS  product CRK11 (CYSTEINE-RICH RLK11); kinase/ protein kinase  note CYSTEINE-RICH RLK11 (CRK11); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: response to oxidative stress, defense response to bacterium, incompatible interaction; LOCATED IN: membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G23300.1); Has 89247 Blast hits to 88034 proteins in 3113 species: Archae - 50; Bacteria - 7771; Metazoa - 38934; Fungi - 7075; Plants - 19736; Viruses - 418; Other Eukaryotes - 15263 (source: NCBI BLink).  protein_id AT4G23190.1p  transcript_id AT4G23190.1  protein_id AT4G23190.1p  transcript_id AT4G23190.1  
At4g23205	chr4:012144243	0.0	C/12144243-12144958	AT4G23205.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G23205.1  
At4g23200	chr4:012147098	0.0	C/12147098-12147934,12146972-12147041,12146656-12146771,12146362-12146572,12146027-12146264,12145785-12145938,12145380-12145700	AT4G23200.1  CDS  gene_syn F21P8.90, F21P8_90  go_component vacuole|GO:0005773|15539469|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function protein kinase activity|GO:0004672||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: vacuole; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: kinase (TAIR:AT4G23220.1); Has 87158 Blast hits to 86047 proteins in 3199 species: Archae - 43; Bacteria - 7647; Metazoa - 38197; Fungi - 6953; Plants - 19287; Viruses - 385; Other Eukaryotes - 14646 (source: NCBI BLink).  protein_id AT4G23200.1p  transcript_id AT4G23200.1  protein_id AT4G23200.1p  transcript_id AT4G23200.1  
At4g23210	chr4:012150545	0.0	C/12150545-12151418,12150322-12150459,12150121-12150230,12149816-12150026,12149499-12149740	AT4G23210.2  CDS  gene_syn CRK13, CYSTEINE-RICH RECEPTOR-LIKE KINASE 13, F21P8.100, F21P8_100, HIG1, HIGH INDOLIC GLUCOSINOLATE 1  gene CRK13  function Encodes a Cysteine-rich receptor-like kinase (CRK13). Overexpression of CRK13 leads to hypersensitive response cell death, and induces defense against pathogens by causing increased accumulation of salicylic acid.  go_component endomembrane system|GO:0012505||IEA  go_process response to molecule of bacterial origin|GO:0002237|17419849|IEP  go_process plant-type hypersensitive response|GO:0009626|17419849|IMP  go_process defense response to bacterium|GO:0042742|17419849|IEP  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note CYSTEINE-RICH RECEPTOR-LIKE KINASE 13 (CRK13); FUNCTIONS IN: kinase activity; INVOLVED IN: defense response to bacterium, response to molecule of bacterial origin, plant-type hypersensitive response; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G23300.1); Has 58151 Blast hits to 57735 proteins in 2527 species: Archae - 25; Bacteria - 4302; Metazoa - 25185; Fungi - 4125; Plants - 16022; Viruses - 220; Other Eukaryotes - 8272 (source: NCBI BLink).  protein_id AT4G23210.2p  transcript_id AT4G23210.2  protein_id AT4G23210.2p  transcript_id AT4G23210.2  
At4g23210	chr4:012150545	0.0	C/12150545-12151418,12150322-12150459,12150121-12150230,12149816-12150026,12149503-12149740,12149154-12149415	AT4G23210.1  CDS  gene_syn CRK13, CYSTEINE-RICH RECEPTOR-LIKE KINASE 13, F21P8.100, F21P8_100, HIG1, HIGH INDOLIC GLUCOSINOLATE 1  gene CRK13  function Encodes a Cysteine-rich receptor-like kinase (CRK13). Overexpression of CRK13 leads to hypersensitive response cell death, and induces defense against pathogens by causing increased accumulation of salicylic acid.  go_component endomembrane system|GO:0012505||IEA  go_process response to molecule of bacterial origin|GO:0002237|17419849|IEP  go_process plant-type hypersensitive response|GO:0009626|17419849|IMP  go_process defense response to bacterium|GO:0042742|17419849|IEP  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note CYSTEINE-RICH RECEPTOR-LIKE KINASE 13 (CRK13); FUNCTIONS IN: kinase activity; INVOLVED IN: defense response to bacterium, response to molecule of bacterial origin, plant-type hypersensitive response; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G23300.1); Has 82693 Blast hits to 81782 proteins in 3036 species: Archae - 37; Bacteria - 7282; Metazoa - 36454; Fungi - 6366; Plants - 18522; Viruses - 389; Other Eukaryotes - 13643 (source: NCBI BLink).  protein_id AT4G23210.1p  transcript_id AT4G23210.1  protein_id AT4G23210.1p  transcript_id AT4G23210.1  
At4g23210	chr4:012150545	0.0	C/12150545-12151418,12150322-12150459,12150121-12150230,12149816-12150026,12149503-12149740,12149271-12149415,12148892-12149197	AT4G23210.3  CDS  gene_syn CRK13, CYSTEINE-RICH RECEPTOR-LIKE KINASE 13, F21P8.100, F21P8_100, HIG1, HIGH INDOLIC GLUCOSINOLATE 1  gene CRK13  function Encodes a Cysteine-rich receptor-like kinase (CRK13). Overexpression of CRK13 leads to hypersensitive response cell death, and induces defense against pathogens by causing increased accumulation of salicylic acid.  go_component endomembrane system|GO:0012505||IEA  go_process response to molecule of bacterial origin|GO:0002237|17419849|IEP  go_process plant-type hypersensitive response|GO:0009626|17419849|IMP  go_process defense response to bacterium|GO:0042742|17419849|IEP  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note CYSTEINE-RICH RECEPTOR-LIKE KINASE 13 (CRK13); FUNCTIONS IN: kinase activity; INVOLVED IN: defense response to bacterium, response to molecule of bacterial origin, plant-type hypersensitive response; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G23300.1); Has 83132 Blast hits to 82154 proteins in 3034 species: Archae - 37; Bacteria - 7340; Metazoa - 36605; Fungi - 6372; Plants - 18650; Viruses - 388; Other Eukaryotes - 13740 (source: NCBI BLink).  protein_id AT4G23210.3p  transcript_id AT4G23210.3  protein_id AT4G23210.3p  transcript_id AT4G23210.3  
At4g23215	chr4:012152900	0.0	C/12152900-12153459	AT4G23215.1  pseudogenic_transcript  pseudo  function pseudogene of cysteine-rich receptor-like protein kinase family protein  
At4g23220	chr4:012156068	0.0	C/12156068-12157091,12155815-12155934,12155516-12155640,12155194-12155401,12154727-12154964,12154485-12154638,12154091-12154408	AT4G23220.1  CDS  gene_syn F21P8.110, F21P8_110  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product kinase  note kinase; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: kinase (TAIR:AT4G11530.1); Has 87660 Blast hits to 86542 proteins in 3154 species: Archae - 47; Bacteria - 7686; Metazoa - 38440; Fungi - 6988; Plants - 19219; Viruses - 413; Other Eukaryotes - 14867 (source: NCBI BLink).  protein_id AT4G23220.1p  transcript_id AT4G23220.1  protein_id AT4G23220.1p  transcript_id AT4G23220.1  
At4g23230	chr4:012159472	0.0	C/12159472-12159919,12159222-12159356,12159015-12159130,12158702-12158912,12158384-12158621,12158139-12158289,12157827-12158051	AT4G23230.1  CDS  gene_syn F21P8.120, F21P8_120  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G23160.1); Has 87973 Blast hits to 86925 proteins in 3135 species: Archae - 51; Bacteria - 7860; Metazoa - 38278; Fungi - 7025; Plants - 19314; Viruses - 415; Other Eukaryotes - 15030 (source: NCBI BLink).  protein_id AT4G23230.1p  transcript_id AT4G23230.1  protein_id AT4G23230.1p  transcript_id AT4G23230.1  
At4g23240	chr4:012161832	0.0	C/12161832-12161954,12161504-12161714,12161171-12161408,12160929-12161082,12160502-12160834	AT4G23240.1  CDS  gene_syn F21P8.130, F21P8_130  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function ATP binding|GO:0005524||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G23290.2); Has 83052 Blast hits to 82105 proteins in 2938 species: Archae - 47; Bacteria - 7560; Metazoa - 36578; Fungi - 6394; Plants - 18191; Viruses - 380; Other Eukaryotes - 13902 (source: NCBI BLink).  protein_id AT4G23240.1p  transcript_id AT4G23240.1  protein_id AT4G23240.1p  transcript_id AT4G23240.1  
At4g23250	chr4:012166502	0.0	C/12166502-12167026,12166128-12166450,12165923-12166041,12165729-12165829,12165429-12165639,12165096-12165333,12164863-12165016,12164466-12164783,12164107-12164165,12162389-12163134,12162190-12162321,12162004-12162074	AT4G23250.1  CDS  gene_syn DUF26-21, EMB1290, EMBRYO DEFECTIVE 1290, F21P8.140, F21P8_140  gene EMB1290  go_component plasma membrane|GO:0005886|17317660|IDA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process protein amino acid autophosphorylation|GO:0046777|18552232|IDA  go_function protein kinase activity|GO:0004672|18552232|IDA  go_function kinase activity|GO:0016301||ISS  product EMB1290 (EMBRYO DEFECTIVE 1290); kinase/ protein kinase  note EMBRYO DEFECTIVE 1290 (EMB1290); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: embryonic development ending in seed dormancy, protein amino acid autophosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT4G23260.1); Has 87813 Blast hits to 85985 proteins in 3092 species: Archae - 45; Bacteria - 7629; Metazoa - 37890; Fungi - 6855; Plants - 20068; Viruses - 386; Other Eukaryotes - 14940 (source: NCBI BLink).  protein_id AT4G23250.1p  transcript_id AT4G23250.1  protein_id AT4G23250.1p  transcript_id AT4G23250.1  
At4g23260	chr4:012169214	0.0	C/12169214-12170055,12168978-12169099,12168770-12168870,12168474-12168684,12168162-12168399,12167917-12168070,12167528-12167839	AT4G23260.1  CDS  gene_syn F21P8.150, F21P8_150  go_component endomembrane system|GO:0012505||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_process response to abscisic acid stimulus|GO:0009737|16258012|IEP  go_function protein kinase activity|GO:0004672||ISS  product ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: EMB1290 (EMBRYO DEFECTIVE 1290); kinase/ protein kinase (TAIR:AT4G23250.1); Has 88566 Blast hits to 87470 proteins in 3086 species: Archae - 43; Bacteria - 7751; Metazoa - 38533; Fungi - 7040; Plants - 19637; Viruses - 380; Other Eukaryotes - 15182 (source: NCBI BLink).  protein_id AT4G23260.1p  transcript_id AT4G23260.1  protein_id AT4G23260.1p  transcript_id AT4G23260.1  
At4g23270	chr4:012171133	0.0	W/12171133-12171898,12171990-12172127,12172219-12172340,12172631-12172841,12172925-12173162,12173246-12173399,12173486-12173794	AT4G23270.1  CDS  gene_syn F21P8.160, F21P8_160  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function ATP binding|GO:0005524||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT4G23280.1); Has 87345 Blast hits to 86129 proteins in 3201 species: Archae - 50; Bacteria - 7589; Metazoa - 38488; Fungi - 6788; Plants - 19267; Viruses - 379; Other Eukaryotes - 14784 (source: NCBI BLink).  protein_id AT4G23270.1p  transcript_id AT4G23270.1  protein_id AT4G23270.1p  transcript_id AT4G23270.1  
At4g23271	chr4:012173944	0.0	C/12173944-12174045	AT4G23271.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G23271.1p  transcript_id AT4G23271.1  protein_id AT4G23271.1p  transcript_id AT4G23271.1  
At4g23280	chr4:012174740	0.0	W/12174740-12175481,12175602-12175781,12175853-12175980,12176297-12176507,12176592-12176829,12176913-12177066,12177154-12177471	AT4G23280.1  CDS  gene_syn F21P8.170, F21P8_170  go_component chloroplast|GO:0009507|18431481|IDA  go_process defense response|GO:0006952|11135117|TAS  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: defense response; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G23270.1); Has 86361 Blast hits to 85302 proteins in 3138 species: Archae - 47; Bacteria - 7590; Metazoa - 37937; Fungi - 6726; Plants - 19197; Viruses - 371; Other Eukaryotes - 14493 (source: NCBI BLink).  protein_id AT4G23280.1p  transcript_id AT4G23280.1  protein_id AT4G23280.1p  transcript_id AT4G23280.1  
At4g23290	chr4:012179994	0.0	C/12179994-12180810,12179573-12179704,12179411-12179473,12179210-12179334,12178911-12179121,12178587-12178824,12178341-12178494,12177910-12178242	AT4G23290.2  CDS  gene_syn F21P8.180, F21P8_180  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G11460.1); Has 85694 Blast hits to 84665 proteins in 3116 species: Archae - 39; Bacteria - 7613; Metazoa - 37407; Fungi - 6737; Plants - 19069; Viruses - 364; Other Eukaryotes - 14465 (source: NCBI BLink).  protein_id AT4G23290.2p  transcript_id AT4G23290.2  protein_id AT4G23290.2p  transcript_id AT4G23290.2  
At4g23290	chr4:012180448	0.0	C/12180448-12180669,12179994-12180318,12179573-12179704,12179411-12179473,12179210-12179334,12178911-12179121,12178587-12178824,12178341-12178494,12177910-12178242	AT4G23290.1  CDS  gene_syn F21P8.180, F21P8_180  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G11460.1); Has 85540 Blast hits to 84536 proteins in 3117 species: Archae - 39; Bacteria - 7613; Metazoa - 37407; Fungi - 6737; Plants - 18915; Viruses - 364; Other Eukaryotes - 14465 (source: NCBI BLink).  protein_id AT4G23290.1p  transcript_id AT4G23290.1  protein_id AT4G23290.1p  transcript_id AT4G23290.1  
At4g23300	chr4:012182002	0.0	W/12182002-12182854,12182930-12183061,12183172-12183293,12183391-12183601,12183684-12183921,12184005-12184164,12184265-12184531	AT4G23300.1  CDS  gene_syn F21P8.190, F21P8_190  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G23210.3); Has 74876 Blast hits to 74108 proteins in 2144 species: Archae - 39; Bacteria - 6131; Metazoa - 33159; Fungi - 5443; Plants - 17687; Viruses - 303; Other Eukaryotes - 12114 (source: NCBI BLink).  protein_id AT4G23300.1p  transcript_id AT4G23300.1  protein_id AT4G23300.1p  transcript_id AT4G23300.1  
At4g23310	chr4:012185737	0.0	W/12185737-12187186,12187258-12187379,12187586-12187796,12187885-12188122,12188206-12188359,12188446-12188763	AT4G23310.1  CDS  gene_syn F21P8.200, F21P8_200  go_component endomembrane system|GO:0012505||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952|11135117|TAS  product receptor-like protein kinase, putative  note receptor-like protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: stem, leaf whorl, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT4G23280.1); Has 88004 Blast hits to 86051 proteins in 3144 species: Archae - 47; Bacteria - 7657; Metazoa - 38194; Fungi - 6806; Plants - 20180; Viruses - 380; Other Eukaryotes - 14740 (source: NCBI BLink).  protein_id AT4G23310.1p  transcript_id AT4G23310.1  protein_id AT4G23310.1p  transcript_id AT4G23310.1  
At4g23320	chr4:012191613	0.0	C/12191613-12191626,12191445-12191519,12190936-12191108,12190732-12190851,12190483-12190604,12190181-12190391,12189851-12190088,12189671-12189762,12189182-12189387	AT4G23320.1  CDS  gene_syn F16G20.20  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: stem, cauline leaf, leaf; EXPRESSED DURING: LP.06 six leaves visible; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G11460.1); Has 85386 Blast hits to 84367 proteins in 3146 species: Archae - 42; Bacteria - 7673; Metazoa - 37596; Fungi - 6776; Plants - 18513; Viruses - 367; Other Eukaryotes - 14419 (source: NCBI BLink).  protein_id AT4G23320.1p  transcript_id AT4G23320.1  protein_id AT4G23320.1p  transcript_id AT4G23320.1  
At4g23330	chr4:012192136	0.0	W/12192136-12192351,12192710-12192776,12192875-12192923,12193436-12193486,12193620-12193768,12194270-12194403,12194497-12194610	AT4G23330.1  CDS  gene_syn F16G20.30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product eukaryotic translation initiation factor-related  note eukaryotic translation initiation factor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A); translation initiation factor (TAIR:AT4G11420.1); Has 31 Blast hits to 25 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G23330.1p  transcript_id AT4G23330.1  protein_id AT4G23330.1p  transcript_id AT4G23330.1  
At4g23340	chr4:012195719	0.0	C/12195719-12196339	AT4G23340.2  CDS  gene_syn F16G20.40  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function oxidoreductase activity|GO:0016491||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: gibberellin 20-oxidase-related (TAIR:AT5G51310.1); Has 5498 Blast hits to 5491 proteins in 665 species: Archae - 0; Bacteria - 702; Metazoa - 121; Fungi - 557; Plants - 2889; Viruses - 0; Other Eukaryotes - 1229 (source: NCBI BLink).  protein_id AT4G23340.2p  transcript_id AT4G23340.2  protein_id AT4G23340.2p  transcript_id AT4G23340.2  
At4g23340	chr4:012196447	0.0	C/12196447-12196793,12195719-12196346	AT4G23340.1  CDS  gene_syn F16G20.40  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function oxidoreductase activity|GO:0016491||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: gibberellin 20-oxidase-related (TAIR:AT5G51310.1); Has 5920 Blast hits to 5907 proteins in 688 species: Archae - 0; Bacteria - 722; Metazoa - 125; Fungi - 673; Plants - 3026; Viruses - 0; Other Eukaryotes - 1374 (source: NCBI BLink).  protein_id AT4G23340.1p  transcript_id AT4G23340.1  protein_id AT4G23340.1p  transcript_id AT4G23340.1  
At4g23350	chr4:012199036	0.0	C/12199036-12199200,12198879-12198965,12198562-12198783,12198305-12198466,12197894-12198040,12197446-12197823	AT4G23350.1  CDS  gene_syn F16G20.50, F16G20_50  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23360.1); Has 415 Blast hits to 385 proteins in 16 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 10; Plants - 401; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G23350.1p  transcript_id AT4G23350.1  protein_id AT4G23350.1p  transcript_id AT4G23350.1  
At4g23360	chr4:012204628	0.0	C/12204628-12204792,12204473-12204559,12204146-12204370,12203889-12204047,12203719-12203772,12203469-12203612,12203022-12203395,12202322-12202479,12201849-12202051,12201694-12201780,12201374-12201595,12201116-12201274,12200943-12201016,12200720-12200852,12200269-12200646	AT4G23360.1  CDS  gene_syn F16G20.60, F16G20_60  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23370.1); Has 842 Blast hits to 392 proteins in 17 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 20; Plants - 814; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G23360.1p  transcript_id AT4G23360.1  protein_id AT4G23360.1p  transcript_id AT4G23360.1  
At4g23364	chr4:012205480	0.0	C/12205480-12205885	AT4G23364.1  pseudogenic_transcript  pseudo  function Pseudogene of AT4G23340; oxidoreductase, 2OG-Fe(II) oxygenase family protein  
At4g23370	chr4:012213280	0.0	C/12213280-12213435,12213078-12213164,12212821-12212981,12212498-12212654,12212341-12212391,12212170-12212226,12211636-12211876,12210790-12210905,12210614-12210700,12210286-12210510,12210044-12210199,12209888-12209938,12209629-12209775,12209229-12209478,12207976-12208097,12207809-12207895,12207482-12207703,12207232-12207390,12207043-12207116,12206813-12206945,12206362-12206739	AT4G23370.1  CDS  gene_syn F16G20.70, F16G20_70  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23360.1); Has 1332 Blast hits to 397 proteins in 17 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 30; Plants - 1290; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G23370.1p  transcript_id AT4G23370.1  protein_id AT4G23370.1p  transcript_id AT4G23370.1  
At4g23375	chr4:012214069	0.0	C/12214069-12214167	AT4G23375.1  miRNA  gene_syn MICRORNA845B, MIR845B  gene MIR845B  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCGCUCUGAUACCAAAUUGAUG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR845B (MICRORNA845B); miRNA  transcript_id AT4G23375.1  
At4g23380	chr4:012216166	0.0	C/12216166-12216333,12215977-12216063,12215662-12215892,12215367-12215579,12215092-12215260,12214667-12215001	AT4G23380.1  CDS  gene_syn F16G20.80, F16G20_80  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23370.1); Has 417 Blast hits to 387 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 10; Plants - 403; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G23380.1p  transcript_id AT4G23380.1  protein_id AT4G23380.1p  transcript_id AT4G23380.1  
At4g23387	chr4:012217447	0.0	C/12217447-12217527	AT4G23387.1  miRNA  gene_syn MICRORNA845A, MIR845A  gene MIR845A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: CGGCUCUGAUACCAAUUGAUG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR845A (MICRORNA845A); miRNA  transcript_id AT4G23387.1  
At4g23390	chr4:012219529	0.0	C/12219529-12219687,12219304-12219390,12218997-12219224,12218738-12218887,12218606-12218659,12218379-12218525,12217913-12218293	AT4G23390.1  CDS  gene_syn F16G20.90, F16G20_90  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20170.2); Has 423 Blast hits to 388 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 10; Plants - 409; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G23390.1p  transcript_id AT4G23390.1  protein_id AT4G23390.1p  transcript_id AT4G23390.1  
At4g23400	chr4:012220792	0.0	W/12220792-12221122,12221396-12221691,12221786-12221926,12222060-12222155	AT4G23400.1  CDS  gene_syn F16G20.100, F16G20_100, PCR55, PIP1;5, PIP1D, PLASMA MEMBRANE INTRINSIC PROTEIN 1;5  gene PIP1;5  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_process response to salt stress|GO:0009651|16183846|IEP  go_function water channel activity|GO:0015250|9276952|ISS  go_function water channel activity|GO:0015250||ISS  product PIP1;5 (PLASMA MEMBRANE INTRINSIC PROTEIN 1;5); water channel  note PLASMA MEMBRANE INTRINSIC PROTEIN 1;5 (PIP1;5); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, response to salt stress; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: PIP1;4 (PLASMA MEMBRANE INTRINSIC PROTEIN 1;4); water channel (TAIR:AT4G00430.1); Has 6698 Blast hits to 6684 proteins in 1252 species: Archae - 65; Bacteria - 2617; Metazoa - 1273; Fungi - 288; Plants - 1492; Viruses - 2; Other Eukaryotes - 961 (source: NCBI BLink).  protein_id AT4G23400.1p  transcript_id AT4G23400.1  protein_id AT4G23400.1p  transcript_id AT4G23400.1  
At4g23410	chr4:012224094	0.0	W/12224094-12224585,12224946-12225060,12225119-12225225	AT4G23410.1  CDS  gene_syn F16G20.110, F16G20_110, TET5, TETRASPANIN5  gene TET5  function Member of TETRASPANIN family  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process aging|GO:0007568||ISS  product TET5 (TETRASPANIN5)  note TETRASPANIN5 (TET5); INVOLVED IN: aging; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: TET6 (TETRASPANIN6) (TAIR:AT3G12090.1); Has 212 Blast hits to 212 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 197; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT4G23410.1p  transcript_id AT4G23410.1  protein_id AT4G23410.1p  transcript_id AT4G23410.1  
At4g23420	chr4:012226288	0.0	W/12226288-12226393,12227065-12227296,12227380-12227459,12227560-12227713,12227804-12227882,12227973-12228060,12228184-12228230,12228398-12228562	AT4G23420.1  CDS  gene_syn F16G20.120, F16G20_120  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process metabolic process|GO:0008152||ISS  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT4G23430.2); Has 36520 Blast hits to 36480 proteins in 1771 species: Archae - 235; Bacteria - 21258; Metazoa - 3640; Fungi - 2170; Plants - 961; Viruses - 0; Other Eukaryotes - 8256 (source: NCBI BLink).  protein_id AT4G23420.1p  transcript_id AT4G23420.1  protein_id AT4G23420.1p  transcript_id AT4G23420.1  
At4g23420	chr4:012226288	0.0	W/12226288-12226393,12227065-12227296,12227380-12227459,12227560-12227713,12227804-12227882,12227973-12228060,12228184-12228230,12228398-12228562	AT4G23420.2  CDS  gene_syn F16G20.120, F16G20_120  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process metabolic process|GO:0008152||ISS  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT4G23430.2); Has 36520 Blast hits to 36480 proteins in 1771 species: Archae - 235; Bacteria - 21258; Metazoa - 3640; Fungi - 2170; Plants - 961; Viruses - 0; Other Eukaryotes - 8256 (source: NCBI BLink).  protein_id AT4G23420.2p  transcript_id AT4G23420.2  protein_id AT4G23420.2p  transcript_id AT4G23420.2  
At4g23430	chr4:012229171	0.0	W/12229171-12229276,12230022-12230253,12230330-12230409,12230527-12230680,12230755-12230833,12230918-12231005,12231122-12231168,12231311-12231493	AT4G23430.2  CDS  gene_syn F16G20.130, F16G20_130  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component chloroplast inner membrane|GO:0009706|12177442|IDA  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT4G23420.2); Has 37226 Blast hits to 37180 proteins in 1745 species: Archae - 231; Bacteria - 21300; Metazoa - 3770; Fungi - 2218; Plants - 861; Viruses - 0; Other Eukaryotes - 8846 (source: NCBI BLink).  protein_id AT4G23430.2p  transcript_id AT4G23430.2  protein_id AT4G23430.2p  transcript_id AT4G23430.2  
At4g23430	chr4:012229171	0.0	W/12229171-12229276,12230022-12230253,12230330-12230409,12230527-12230680,12230761-12230833,12230918-12231005,12231122-12231168,12231311-12231493	AT4G23430.1  CDS  gene_syn F16G20.130, F16G20_130  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component chloroplast inner membrane|GO:0009706|12177442|IDA  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT4G23420.2); Has 37575 Blast hits to 37531 proteins in 1740 species: Archae - 231; Bacteria - 21480; Metazoa - 3814; Fungi - 2220; Plants - 873; Viruses - 0; Other Eukaryotes - 8957 (source: NCBI BLink).  protein_id AT4G23430.1p  transcript_id AT4G23430.1  protein_id AT4G23430.1p  transcript_id AT4G23430.1  
At4g23430	chr4:012229171	0.0	W/12229171-12229276,12230022-12230253,12230330-12230409,12230557-12230680,12230761-12230833,12230918-12231005,12231122-12231168,12231311-12231493	AT4G23430.3  CDS  gene_syn F16G20.130, F16G20_130  go_component chloroplast|GO:0009507|18431481|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component chloroplast inner membrane|GO:0009706|12177442|IDA  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast, chloroplast inner membrane; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT4G23420.2); Has 2788 Blast hits to 2775 proteins in 240 species: Archae - 6; Bacteria - 1398; Metazoa - 1038; Fungi - 262; Plants - 48; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT4G23430.3p  transcript_id AT4G23430.3  protein_id AT4G23430.3p  transcript_id AT4G23430.3  
At4g23432	chr4:012233194	0.0	C/12233194-12233475	AT4G23432.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G23432.1p  transcript_id AT4G23432.1  protein_id AT4G23432.1p  transcript_id AT4G23432.1  
At4g23440	chr4:012237765	0.0	W/12237765-12240659	AT4G23440.1  CDS  gene_syn F16G20.140, F16G20_140  go_component plasma membrane|GO:0005886|17317660|IDA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  product nucleoside-triphosphatase/ nucleotide binding / transmembrane receptor  note nucleoside-triphosphatase/ nucleotide binding / transmembrane receptor; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding; INVOLVED IN: signal transduction, innate immune response; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: nucleoside-triphosphatase/ nucleotide binding (TAIR:AT5G56220.1); Has 376 Blast hits to 362 proteins in 90 species: Archae - 2; Bacteria - 139; Metazoa - 16; Fungi - 83; Plants - 117; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT4G23440.1p  transcript_id AT4G23440.1  protein_id AT4G23440.1p  transcript_id AT4G23440.1  
At4g23450	chr4:012241802	0.0	C/12241802-12241837,12241430-12241721,12241245-12241354,12241113-12241136	AT4G23450.1  CDS  gene_syn F16G20.150, F16G20_150  go_component chloroplast|GO:0009507||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G41350.1); Has 4637 Blast hits to 4625 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 1480; Fungi - 298; Plants - 1981; Viruses - 9; Other Eukaryotes - 869 (source: NCBI BLink).  protein_id AT4G23450.1p  transcript_id AT4G23450.1  protein_id AT4G23450.1p  transcript_id AT4G23450.1  
At4g23460	chr4:012248812	0.0	C/12248812-12248898,12248171-12248368,12247910-12248023,12247528-12247778,12247020-12247155,12246708-12246887,12246527-12246619,12246223-12246434,12246085-12246148,12245803-12245982,12245607-12245699,12245121-12245500,12244791-12244980,12244500-12244703,12243899-12244198	AT4G23460.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process intracellular protein transport|GO:0006886||IEA  go_process protein transport|GO:0015031||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function protein transporter activity|GO:0008565||IEA  go_function clathrin binding|GO:0030276||ISS  product beta-adaptin, putative  note beta-adaptin, putative; FUNCTIONS IN: protein transporter activity, protein binding, clathrin binding, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain (InterPro:IPR008152), Armadillo-like helical (InterPro:IPR011989), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553), Clathrin adaptor, beta-adaptin, appendage, Ig-like subdomain (InterPro:IPR013037), Clathrin adaptor, beta-adaptin, appendage, C-terminal subdomain (InterPro:IPR015151), Beta2-adaptin/TATA-box binding, C-terminal (InterPro:IPR012295), Armadillo-type fold (InterPro:IPR016024), Adaptor protein complex, beta subunit (InterPro:IPR016342), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028), Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain (InterPro:IPR013041); BEST Arabidopsis thaliana protein match is: beta-adaptin, putative (TAIR:AT4G11380.1); Has 2627 Blast hits to 2568 proteins in 202 species: Archae - 6; Bacteria - 21; Metazoa - 1244; Fungi - 569; Plants - 228; Viruses - 0; Other Eukaryotes - 559 (source: NCBI BLink).  protein_id AT4G23460.1p  transcript_id AT4G23460.1  protein_id AT4G23460.1p  transcript_id AT4G23460.1  
At4g23470	chr4:012249289	0.0	W/12249289-12249385,12249470-12249491,12249818-12249874,12249961-12250042,12250277-12250372,12250478-12250602,12250701-12250719,12250810-12250957,12251024-12251079	AT4G23470.3  CDS  gene_syn F16G20.170, F16G20_170  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT1G63830.2); Has 541 Blast hits to 369 proteins in 89 species: Archae - 0; Bacteria - 16; Metazoa - 102; Fungi - 19; Plants - 178; Viruses - 0; Other Eukaryotes - 226 (source: NCBI BLink).  protein_id AT4G23470.3p  transcript_id AT4G23470.3  protein_id AT4G23470.3p  transcript_id AT4G23470.3  
At4g23470	chr4:012249289	0.0	W/12249289-12249385,12249470-12249491,12249818-12249874,12249961-12250042,12250277-12250372,12250478-12250602,12250701-12250719,12250810-12251079	AT4G23470.1  CDS  gene_syn F16G20.170, F16G20_170  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT1G63830.2); Has 7258 Blast hits to 4014 proteins in 370 species: Archae - 4; Bacteria - 574; Metazoa - 2624; Fungi - 751; Plants - 1354; Viruses - 367; Other Eukaryotes - 1584 (source: NCBI BLink).  protein_id AT4G23470.1p  transcript_id AT4G23470.1  protein_id AT4G23470.1p  transcript_id AT4G23470.1  
At4g23470	chr4:012249867	0.0	W/12249867-12249874,12249961-12250042,12250277-12250372,12250478-12250602,12250701-12250719,12250810-12251079	AT4G23470.2  CDS  gene_syn F16G20.170, F16G20_170  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT1G63830.2); Has 7304 Blast hits to 4023 proteins in 370 species: Archae - 4; Bacteria - 566; Metazoa - 2648; Fungi - 751; Plants - 1376; Viruses - 367; Other Eukaryotes - 1592 (source: NCBI BLink).  protein_id AT4G23470.2p  transcript_id AT4G23470.2  protein_id AT4G23470.2p  transcript_id AT4G23470.2  
At4g23490	chr4:012253041	0.0	C/12253041-12253973,12251773-12252315,12251580-12251684	AT4G23490.1  CDS  gene_syn F16G20.2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product fringe-related protein  note fringe-related protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: transferase, transferring glycosyl groups (TAIR:AT4G11350.1); Has 476 Blast hits to 472 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 188; Fungi - 143; Plants - 136; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT4G23490.1p  transcript_id AT4G23490.1  protein_id AT4G23490.1p  transcript_id AT4G23490.1  
At4g23493	chr4:012256630	0.0	C/12256630-12256693,12256327-12256526	AT4G23493.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 5 Blast hits to 5 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G23493.1p  transcript_id AT4G23493.1  protein_id AT4G23493.1p  transcript_id AT4G23493.1  
At4g23496	chr4:012258073	0.0	C/12258073-12258297,12257914-12257988	AT4G23496.1  CDS  gene_syn SP1L5, SPIRAL1-LIKE5  gene SP1L5  function Belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SP1L5 (SPIRAL1-LIKE5)  note SPIRAL1-LIKE5 (SP1L5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: SP1L2 (SPIRAL1-LIKE2) (TAIR:AT1G69230.2); Has 104 Blast hits to 96 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G23496.1p  transcript_id AT4G23496.1  protein_id AT4G23496.1p  transcript_id AT4G23496.1  
At4g23500	chr4:012264640	0.0	W/12264640-12265050,12265648-12265768,12265867-12266041,12266128-12266198,12266289-12266535,12266612-12267074	AT4G23500.1  CDS  gene_syn F16G20.200, F16G20_200  go_component cell wall|GO:0005618|15593128|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT3G61490.2); Has 2398 Blast hits to 2396 proteins in 312 species: Archae - 2; Bacteria - 573; Metazoa - 8; Fungi - 891; Plants - 820; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT4G23500.1p  transcript_id AT4G23500.1  protein_id AT4G23500.1p  transcript_id AT4G23500.1  
At4g23510	chr4:012269687	0.0	C/12269687-12270526,12268779-12269410,12268433-12268703,12267764-12267827,12267516-12267616	AT4G23510.1  CDS  gene_syn F16G20.210, F16G20_210  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_process defense response|GO:0006952||ISS  go_process defense response signaling pathway, resistance gene-dependent|GO:0009870||ISS  product disease resistance protein (TIR class), putative  note disease resistance protein (TIR class), putative; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: defense response signaling pathway, resistance gene-dependent, signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: male gametophyte, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Toll-Interleukin-Resistance (TIR) domain-containing protein (TAIR:AT4G11340.1); Has 1423 Blast hits to 762 proteins in 38 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 1419; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G23510.1p  transcript_id AT4G23510.1  protein_id AT4G23510.1p  transcript_id AT4G23510.1  
At4g23515	chr4:012272349	0.0	C/12272349-12272842,12272119-12272221,12271925-12272041,12271745-12271829,12271539-12271675,12271382-12271441	AT4G23515.1  CDS  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_component membrane|GO:0016020|11152613|ISS  go_process defense response|GO:0006952||ISS  go_function transmembrane receptor activity|GO:0004888||ISS  product Toll-Interleukin-Resistance (TIR) domain-containing protein  note Toll-Interleukin-Resistance (TIR) domain-containing protein; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: AtPP2-A8 (Phloem protein 2-A8); carbohydrate binding (TAIR:AT5G45070.1); Has 830 Blast hits to 780 proteins in 40 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 0; Plants - 824; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G23515.1p  transcript_id AT4G23515.1  protein_id AT4G23515.1p  transcript_id AT4G23515.1  
At4g23520	chr4:012275757	0.0	C/12275757-12276219,12275028-12275263,12274785-12274928,12274457-12274684	AT4G23520.1  CDS  gene_syn F16G20.220, F16G20_220  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product cysteine proteinase, putative  note cysteine proteinase, putative; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain (InterPro:IPR013128), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: cysteine proteinase, putative / thiol protease, putative (TAIR:AT5G43060.1); Has 6101 Blast hits to 6050 proteins in 585 species: Archae - 27; Bacteria - 114; Metazoa - 2791; Fungi - 10; Plants - 1209; Viruses - 120; Other Eukaryotes - 1830 (source: NCBI BLink).  protein_id AT4G23520.1p  transcript_id AT4G23520.1  protein_id AT4G23520.1p  transcript_id AT4G23520.1  
At4g23530	chr4:012279171	0.0	W/12279171-12280361	AT4G23530.1  CDS  gene_syn F16G20.230, F16G20_230  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF793 (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11300.1); Has 77 Blast hits to 77 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G23530.1p  transcript_id AT4G23530.1  protein_id AT4G23530.1p  transcript_id AT4G23530.1  
At4g23540	chr4:012285911	0.0	C/12285911-12286420,12285277-12285823,12284903-12285160,12284645-12284736,12284107-12284317,12283687-12283868,12283383-12283610,12282836-12283017,12282551-12282644,12282423-12282479,12282206-12282340,12281984-12282052,12281768-12281881,12281519-12281680,12281280-12281408,12281078-12281179,12280907-12280980,12280547-12280796	AT4G23540.1  CDS  gene_syn F16G20.240, F16G20_240  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), Region of unknown function, NUC173 (InterPro:IPR012978); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT2G34357.1); Has 246 Blast hits to 239 proteins in 109 species: Archae - 0; Bacteria - 2; Metazoa - 95; Fungi - 94; Plants - 29; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT4G23540.1p  transcript_id AT4G23540.1  protein_id AT4G23540.1p  transcript_id AT4G23540.1  
At4g23550	chr4:012291831	0.0	W/12291831-12292174,12292421-12292537,12292635-12293088	AT4G23550.1  CDS  gene_syn ATWRKY29, F9D16.20, F9D16_20, WRKY29  gene WRKY29  function Encodes WRKY DNA-binding protein 29 (WRKY29).  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to chitin|GO:0010200|17722694|IEP  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY29; transcription factor  note WRKY29; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to chitin, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY22; transcription factor (TAIR:AT4G01250.1); Has 1975 Blast hits to 1692 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1962; Viruses - 2; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT4G23550.1p  transcript_id AT4G23550.1  protein_id AT4G23550.1p  transcript_id AT4G23550.1  
At4g23560	chr4:012295597	0.0	C/12295597-12295788,12295274-12295486,12294939-12295139,12294777-12294854,12294512-12294664,12294305-12294413,12294035-12294201,12293633-12293959	AT4G23560.1  CDS  gene_syn Arabidopsis thaliana glycosyl hydrolase 9B15, AtGH9B15, F9D16.30, F9D16_30  gene AtGH9B15  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product AtGH9B15 (Arabidopsis thaliana glycosyl hydrolase 9B15); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds  note Arabidopsis thaliana glycosyl hydrolase 9B15 (AtGH9B15); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: AtGH9B14 (Arabidopsis thaliana glycosyl hydrolase 9B14); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT4G09740.1); Has 1185 Blast hits to 1180 proteins in 198 species: Archae - 0; Bacteria - 382; Metazoa - 135; Fungi - 14; Plants - 624; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT4G23560.1p  transcript_id AT4G23560.1  protein_id AT4G23560.1p  transcript_id AT4G23560.1  
At4g23570	chr4:012300015	0.0	W/12300015-12300174,12300750-12300822,12301010-12301134,12301283-12301385,12301460-12301556,12301639-12301704,12301798-12301936,12302030-12302109,12302194-12302298,12302386-12302493	AT4G23570.3  CDS  gene_syn F9D16.40, F9D16_40, SGT1A  gene SGT1A  function Closely related to SGT1B, may function in SCF(TIR1) mediated protein degradation. AtSGT1a and AtSGT1b are functionally redundant in the resistance to pathogenes. AtSGT1b was more highly expressed than AtSGT1. The N-terminal TPR domain of AtSGT1a reduces the steady-state level of Arabidopsis SGT1 proteins whereas the same domain from AtSGT1b enhances SGT1 accumulation. The TPR domain is dispensable for SGT1 resistance. AtSGT1a is induced upon pathogen infection and can function in R gene-mediated resistance.  go_component SCF ubiquitin ligase complex|GO:0019005|11847308|ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11847308|ISS  go_process defense response|GO:0006952|16619029|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|16619029|IGI  go_function protein binding|GO:0005515|11847307|IPI  product SGT1A; protein binding  note SGT1A; FUNCTIONS IN: protein binding; INVOLVED IN: embryonic development ending in seed dormancy, defense response, ubiquitin-dependent protein catabolic process; LOCATED IN: SCF ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CS domain (InterPro:IPR007052), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), SGS (InterPro:IPR007699), Tetratricopeptide region (InterPro:IPR013026), HSP20-like chaperone (InterPro:IPR008978), CS (InterPro:IPR017447); BEST Arabidopsis thaliana protein match is: SGT1B; protein binding (TAIR:AT4G11260.1); Has 6028 Blast hits to 4686 proteins in 378 species: Archae - 176; Bacteria - 1182; Metazoa - 1993; Fungi - 658; Plants - 613; Viruses - 0; Other Eukaryotes - 1406 (source: NCBI BLink).  protein_id AT4G23570.3p  transcript_id AT4G23570.3  protein_id AT4G23570.3p  transcript_id AT4G23570.3  
At4g23570	chr4:012300015	0.0	W/12300015-12300174,12300753-12300822,12301010-12301134,12301283-12301385,12301460-12301556,12301639-12301704,12301798-12301936,12302030-12302109,12302194-12302298,12302386-12302493	AT4G23570.1  CDS  gene_syn F9D16.40, F9D16_40, SGT1A  gene SGT1A  function Closely related to SGT1B, may function in SCF(TIR1) mediated protein degradation. AtSGT1a and AtSGT1b are functionally redundant in the resistance to pathogenes. AtSGT1b was more highly expressed than AtSGT1. The N-terminal TPR domain of AtSGT1a reduces the steady-state level of Arabidopsis SGT1 proteins whereas the same domain from AtSGT1b enhances SGT1 accumulation. The TPR domain is dispensable for SGT1 resistance. AtSGT1a is induced upon pathogen infection and can function in R gene-mediated resistance.  go_component nucleus|GO:0005634|14617066|IDA  go_component SCF ubiquitin ligase complex|GO:0019005|11847308|ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11847308|ISS  go_process defense response|GO:0006952|16619029|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|16619029|IGI  go_function protein binding|GO:0005515|11847307|IPI  product SGT1A; protein binding  note SGT1A; FUNCTIONS IN: protein binding; INVOLVED IN: embryonic development ending in seed dormancy, defense response, ubiquitin-dependent protein catabolic process; LOCATED IN: SCF ubiquitin ligase complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), SGS (InterPro:IPR007699), HSP20-like chaperone (InterPro:IPR008978), CS (InterPro:IPR017447), CS domain (InterPro:IPR007052), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: SGT1B; protein binding (TAIR:AT4G11260.1); Has 9254 Blast hits to 6491 proteins in 473 species: Archae - 328; Bacteria - 2546; Metazoa - 2399; Fungi - 742; Plants - 776; Viruses - 0; Other Eukaryotes - 2463 (source: NCBI BLink).  protein_id AT4G23570.1p  transcript_id AT4G23570.1  protein_id AT4G23570.1p  transcript_id AT4G23570.1  
At4g23570	chr4:012300015	0.0	W/12300015-12300174,12300753-12300822,12301010-12301134,12301283-12301385,12301460-12301556,12301639-12301704,12301798-12301936,12302030-12302109,12302194-12302298,12302386-12302493	AT4G23570.2  CDS  gene_syn F9D16.40, F9D16_40, SGT1A  gene SGT1A  function Closely related to SGT1B, may function in SCF(TIR1) mediated protein degradation. AtSGT1a and AtSGT1b are functionally redundant in the resistance to pathogenes. AtSGT1b was more highly expressed than AtSGT1. The N-terminal TPR domain of AtSGT1a reduces the steady-state level of Arabidopsis SGT1 proteins whereas the same domain from AtSGT1b enhances SGT1 accumulation. The TPR domain is dispensable for SGT1 resistance. AtSGT1a is induced upon pathogen infection and can function in R gene-mediated resistance.  go_component nucleus|GO:0005634|14617066|IDA  go_component SCF ubiquitin ligase complex|GO:0019005|11847308|ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11847308|ISS  go_process defense response|GO:0006952|16619029|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|16619029|IGI  go_function protein binding|GO:0005515|11847307|IPI  product SGT1A; protein binding  note SGT1A; FUNCTIONS IN: protein binding; INVOLVED IN: embryonic development ending in seed dormancy, defense response, ubiquitin-dependent protein catabolic process; LOCATED IN: SCF ubiquitin ligase complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), SGS (InterPro:IPR007699), HSP20-like chaperone (InterPro:IPR008978), CS (InterPro:IPR017447), CS domain (InterPro:IPR007052), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: SGT1B; protein binding (TAIR:AT4G11260.1); Has 9254 Blast hits to 6491 proteins in 473 species: Archae - 328; Bacteria - 2546; Metazoa - 2399; Fungi - 742; Plants - 776; Viruses - 0; Other Eukaryotes - 2463 (source: NCBI BLink).  protein_id AT4G23570.2p  transcript_id AT4G23570.2  protein_id AT4G23570.2p  transcript_id AT4G23570.2  
At4g23580	chr4:012304246	0.0	C/12304246-12305397	AT4G23580.1  CDS  gene_syn F9D16.50, F9D16_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G33900.1); Has 1908 Blast hits to 1693 proteins in 97 species: Archae - 0; Bacteria - 25; Metazoa - 1176; Fungi - 2; Plants - 642; Viruses - 8; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT4G23580.1p  transcript_id AT4G23580.1  protein_id AT4G23580.1p  transcript_id AT4G23580.1  
At4g23590	chr4:012307195	0.0	W/12307195-12307445,12307529-12307868,12308197-12308415,12308551-12308610,12308730-12308885,12308989-12309082,12309291-12309445	AT4G23590.1  CDS  gene_syn F9D16.60, F9D16_60  go_process cellular amino acid and derivative metabolic process|GO:0006519||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function catalytic activity|GO:0003824||IEA  go_function transaminase activity|GO:0008483||IEA  go_function transferase activity, transferring nitrogenous groups|GO:0016769||IEA  go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_component cellular_component|GO:0005575||ND  go_process biosynthetic process|GO:0009058||ISS  go_function transaminase activity|GO:0008483||ISS  product aminotransferase class I and II family protein  note aminotransferase class I and II family protein; FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity; INVOLVED IN: cellular amino acid and derivative metabolic process, biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Tyrosine/nicotianamine aminotransferase (InterPro:IPR005958), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: CORI3 (CORONATINE INDUCED 1); cystathionine beta-lyase/ transaminase (TAIR:AT4G23600.1); Has 21625 Blast hits to 21622 proteins in 1678 species: Archae - 555; Bacteria - 12393; Metazoa - 596; Fungi - 414; Plants - 837; Viruses - 0; Other Eukaryotes - 6830 (source: NCBI BLink).  protein_id AT4G23590.1p  transcript_id AT4G23590.1  protein_id AT4G23590.1p  transcript_id AT4G23590.1  
At4g23600	chr4:012310657	0.0	W/12310657-12310907,12311318-12311657,12311754-12311972,12312084-12312143,12312236-12312391,12312482-12312575,12312711-12312733	AT4G23600.3  CDS  gene_syn CORI3, CORONATINE INDUCED 1, F9D16.70, F9D16_70, JASMONIC ACID RESPONSIVE 2, JR2  gene CORI3  function Encodes cystine lyase which is expected to be involved in amino acid metabolism, providing the plant with cysteine and the generation of precursors of ethylene biosynthesis. mRNA levels are elevated in response to wounding.  go_component vacuole|GO:0005773|15539469|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process amino acid metabolic process|GO:0006520|16008101|IEP  go_process biosynthetic process|GO:0009058||ISS  go_process response to wounding|GO:0009611|16021335|IEP  go_process response to wounding|GO:0009611|9342878|IEP  go_process response to salt stress|GO:0009651|11351099|IEP  go_process response to abscisic acid stimulus|GO:0009737|9648747|IEP  go_process response to jasmonic acid stimulus|GO:0009753|11500565|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16021335|IEP  go_process response to jasmonic acid stimulus|GO:0009753|9648747|IEP  go_process response to microbial phytotoxin|GO:0010188|11500565|IEP  go_process hyperosmotic salinity response|GO:0042538|12525491|TAS  go_function cystathionine beta-lyase activity|GO:0004121|12525491|IDA  go_function transaminase activity|GO:0008483|9342878|NAS  go_function transaminase activity|GO:0008483||ISS  product CORI3 (CORONATINE INDUCED 1); cystathionine beta-lyase/ transaminase  note CORONATINE INDUCED 1 (CORI3); FUNCTIONS IN: cystathionine beta-lyase activity, transaminase activity; INVOLVED IN: in 8 processes; LOCATED IN: apoplast, vacuole; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Tyrosine/nicotianamine aminotransferase (InterPro:IPR005958), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: aminotransferase class I and II family protein (TAIR:AT4G23590.1); Has 21465 Blast hits to 21463 proteins in 1682 species: Archae - 572; Bacteria - 12674; Metazoa - 615; Fungi - 404; Plants - 839; Viruses - 0; Other Eukaryotes - 6361 (source: NCBI BLink).  protein_id AT4G23600.3p  transcript_id AT4G23600.3  protein_id AT4G23600.3p  transcript_id AT4G23600.3  
At4g23600	chr4:012310657	0.0	W/12310657-12310907,12311318-12311657,12311754-12311972,12312084-12312143,12312236-12312391,12312482-12312575,12312737-12312885	AT4G23600.1  CDS  gene_syn CORI3, CORONATINE INDUCED 1, F9D16.70, F9D16_70, JASMONIC ACID RESPONSIVE 2, JR2  gene CORI3  function Encodes cystine lyase which is expected to be involved in amino acid metabolism, providing the plant with cysteine and the generation of precursors of ethylene biosynthesis. mRNA levels are elevated in response to wounding.  go_component vacuole|GO:0005773|15539469|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process amino acid metabolic process|GO:0006520|16008101|IEP  go_process biosynthetic process|GO:0009058||ISS  go_process response to wounding|GO:0009611|16021335|IEP  go_process response to wounding|GO:0009611|9342878|IEP  go_process response to salt stress|GO:0009651|11351099|IEP  go_process response to abscisic acid stimulus|GO:0009737|9648747|IEP  go_process response to jasmonic acid stimulus|GO:0009753|11500565|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16021335|IEP  go_process response to jasmonic acid stimulus|GO:0009753|9648747|IEP  go_process response to microbial phytotoxin|GO:0010188|11500565|IEP  go_process hyperosmotic salinity response|GO:0042538|12525491|TAS  go_function cystathionine beta-lyase activity|GO:0004121|12525491|IDA  go_function transaminase activity|GO:0008483|9342878|NAS  go_function transaminase activity|GO:0008483||ISS  product CORI3 (CORONATINE INDUCED 1); cystathionine beta-lyase/ transaminase  note CORONATINE INDUCED 1 (CORI3); FUNCTIONS IN: cystathionine beta-lyase activity, transaminase activity; INVOLVED IN: in 8 processes; LOCATED IN: apoplast, vacuole; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Tyrosine/nicotianamine aminotransferase (InterPro:IPR005958), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: aminotransferase class I and II family protein (TAIR:AT4G23590.1); Has 22390 Blast hits to 22386 proteins in 1687 species: Archae - 578; Bacteria - 13185; Metazoa - 632; Fungi - 413; Plants - 854; Viruses - 0; Other Eukaryotes - 6728 (source: NCBI BLink).  protein_id AT4G23600.1p  transcript_id AT4G23600.1  protein_id AT4G23600.1p  transcript_id AT4G23600.1  
At4g23600	chr4:012311379	0.0	W/12311379-12311657,12311754-12311972,12312084-12312143,12312236-12312391,12312482-12312575,12312737-12312885	AT4G23600.2  CDS  gene_syn CORI3, CORONATINE INDUCED 1, F9D16.70, F9D16_70, JASMONIC ACID RESPONSIVE 2, JR2  gene CORI3  function Encodes cystine lyase which is expected to be involved in amino acid metabolism, providing the plant with cysteine and the generation of precursors of ethylene biosynthesis. mRNA levels are elevated in response to wounding.  go_component vacuole|GO:0005773|15539469|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process amino acid metabolic process|GO:0006520|16008101|IEP  go_process biosynthetic process|GO:0009058||ISS  go_process response to wounding|GO:0009611|16021335|IEP  go_process response to wounding|GO:0009611|9342878|IEP  go_process response to salt stress|GO:0009651|11351099|IEP  go_process response to abscisic acid stimulus|GO:0009737|9648747|IEP  go_process response to jasmonic acid stimulus|GO:0009753|11500565|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16021335|IEP  go_process response to jasmonic acid stimulus|GO:0009753|9648747|IEP  go_process response to microbial phytotoxin|GO:0010188|11500565|IEP  go_process hyperosmotic salinity response|GO:0042538|12525491|TAS  go_function cystathionine beta-lyase activity|GO:0004121|12525491|IDA  go_function transaminase activity|GO:0008483|9342878|NAS  go_function transaminase activity|GO:0008483||ISS  product CORI3 (CORONATINE INDUCED 1); cystathionine beta-lyase/ transaminase  note CORONATINE INDUCED 1 (CORI3); FUNCTIONS IN: cystathionine beta-lyase activity, transaminase activity; INVOLVED IN: in 8 processes; LOCATED IN: apoplast, vacuole; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Tyrosine/nicotianamine aminotransferase (InterPro:IPR005958), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: aminotransferase class I and II family protein (TAIR:AT4G23590.1); Has 19258 Blast hits to 19254 proteins in 1643 species: Archae - 521; Bacteria - 11009; Metazoa - 563; Fungi - 379; Plants - 747; Viruses - 0; Other Eukaryotes - 6039 (source: NCBI BLink).  protein_id AT4G23600.2p  transcript_id AT4G23600.2  protein_id AT4G23600.2p  transcript_id AT4G23600.2  
At4g23610	chr4:012314037	0.0	W/12314037-12314723	AT4G23610.1  CDS  gene_syn F9D16.80, F9D16_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54200.1); Has 79 Blast hits to 78 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G23610.1p  transcript_id AT4G23610.1  protein_id AT4G23610.1p  transcript_id AT4G23610.1  
At4g23620	chr4:012316234	0.0	C/12316234-12316659,12315973-12316102,12315016-12315254	AT4G23620.1  CDS  gene_syn F9D16.90, F9D16_90  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_function 5S rRNA binding|GO:0008097||IEA  product 50S ribosomal protein-related  note 50S ribosomal protein-related; FUNCTIONS IN: structural constituent of ribosome, 5S rRNA binding; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L25 (InterPro:IPR001021), Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding (InterPro:IPR011035); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66860.1); Has 2862 Blast hits to 2862 proteins in 613 species: Archae - 0; Bacteria - 1307; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 1515 (source: NCBI BLink).  protein_id AT4G23620.1p  transcript_id AT4G23620.1  protein_id AT4G23620.1p  transcript_id AT4G23620.1  
At4g23630	chr4:012318070	0.0	W/12318070-12318334,12318741-12318921,12319004-12319145,12319242-12319311,12319405-12319574	AT4G23630.1  CDS  gene_syn BTI1, F9D16.100, F9D16_100, VIRB2-INTERACTING PROTEIN 1  gene BTI1  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component endoplasmic reticulum|GO:0005783||ISS  go_process biological_process|GO:0008150||ND  product BTI1 (VIRB2-INTERACTING PROTEIN 1)  note VIRB2-INTERACTING PROTEIN 1 (BTI1); INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: BTI2 (VIRB2-INTERACTING PROTEIN 2) (TAIR:AT4G11220.1); Has 962 Blast hits to 962 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 652; Fungi - 10; Plants - 284; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT4G23630.1p  transcript_id AT4G23630.1  protein_id AT4G23630.1p  transcript_id AT4G23630.1  
At4g23635	chr4:012320110	0.0	W/12320110-12320193	AT4G23635.1  tRNA  gene_syn 67146.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: CAA)  transcript_id AT4G23635.1  
At4g23640	chr4:012324289	0.0	C/12324289-12324291,12323613-12323856,12323280-12323528,12323132-12323179,12322770-12323030,12322630-12322682,12322194-12322308,12321647-12321901,12320476-12321575	AT4G23640.1  CDS  gene_syn ATKT3, F9D16.110, F9D16_110, KUP4, TINY ROOT HAIR 1, TRH1  gene TRH1  function Functions as a potassium transporter and is required for the establishment of root tip growth.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component membrane|GO:0016020|11500563|NAS  go_process potassium ion transport|GO:0006813|11158535|IC  go_process unidimensional cell growth|GO:0009826|11158535|IMP  go_process cell tip growth|GO:0009932|11158535|IMP  go_function potassium ion transmembrane transporter activity|GO:0015079|11158535|IGI  go_function potassium ion transmembrane transporter activity|GO:0015079||ISS  product TRH1 (TINY ROOT HAIR 1); potassium ion transmembrane transporter  note TINY ROOT HAIR 1 (TRH1); FUNCTIONS IN: potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport, unidimensional cell growth, cell tip growth; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Potassium uptake protein, kup (InterPro:IPR018519), K+ potassium transporter (InterPro:IPR003855); BEST Arabidopsis thaliana protein match is: KUP3 (K+ UPTAKE TRANSPORTER 3); potassium ion transmembrane transporter (TAIR:AT3G02050.1); Has 2030 Blast hits to 1995 proteins in 594 species: Archae - 13; Bacteria - 1400; Metazoa - 1; Fungi - 57; Plants - 441; Viruses - 4; Other Eukaryotes - 114 (source: NCBI BLink).  protein_id AT4G23640.1p  transcript_id AT4G23640.1  protein_id AT4G23640.1p  transcript_id AT4G23640.1  
At4g23650	chr4:012327006	0.0	C/12327006-12327415,12326475-12326761,12326252-12326395,12326008-12326160,12325802-12325917,12325533-12325700,12325337-12325464,12325150-12325249,12324967-12325050	AT4G23650.1  CDS  gene_syn CALCIUM-DEPENDENT PROTEIN KINASE 6, CDPK6, CPK3, Calcium dependent protein kinase 3, F9D16.120, F9D16_120  gene CDPK6  function Encodes calcium dependent protein kinase 3 (CPK3), a member of the Arabidopsis CDPK gene family. CDPKs contain an intrinsic Ca2+-activation domain with four EF hand Ca2+-binding sites. CDPKs protein kinases have been proposed to function in multiple plant signal transduction pathways downstream of [Ca2+]cyt elevations, thus transducing various physiological responses. CPK3 is expressed in both guard cells and mesophyll cells. Functions in guard cell ion channel regulation. ABA and Ca(2+) activation of slow-type anion channels and, interestingly, ABA activation of plasma membrane Ca(2+)-permeable channels were impaired in independent alleles of single and double cpk3cpk6 mutant guard cells. Furthermore, ABA- and Ca(2+)-induced stomatal closing were partially impaired in these cpk3cpk6 mutant alleles. CPK6 is also a member of the Arabidopsis CDPK family.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_process abscisic acid mediated signaling|GO:0009738|17032064|IMP  go_process regulation of stomatal movement|GO:0010119|17032064|IMP  go_process regulation of anion channel activity|GO:0010359|17032064|IMP  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  go_function kinase activity|GO:0016301||ISS  product CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6); ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase  note CALCIUM-DEPENDENT PROTEIN KINASE 6 (CDPK6); FUNCTIONS IN: in 6 functions; INVOLVED IN: regulation of anion channel activity, abscisic acid mediated signaling, protein amino acid phosphorylation, N-terminal protein myristoylation, regulation of stomatal movement; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CPK17; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G12180.1); Has 102818 Blast hits to 95796 proteins in 2810 species: Archae - 65; Bacteria - 7769; Metazoa - 44781; Fungi - 12397; Plants - 17584; Viruses - 461; Other Eukaryotes - 19761 (source: NCBI BLink).  protein_id AT4G23650.1p  transcript_id AT4G23650.1  protein_id AT4G23650.1p  transcript_id AT4G23650.1  
At4g23660	chr4:012330917	0.0	C/12330917-12331359,12330120-12330255,12329531-12329652,12329272-12329341,12329036-12329185,12328437-12328572,12328249-12328345,12328086-12328155	AT4G23660.1  CDS  gene_syn 4-HYDROXYBENZOATE POLYPRENYL DIPHOSPHATE TRANSFERASE, Arabidopsis thaliana polyprenyltransferase 1, AtPPT1, F9D16.130, F9D16_130  gene AtPPT1  function Encodes para-hydroxy benzoate polyprenyl diphosphate transferase. The enzyme was shown to be able to use a wide range of prenyl substrates : from GPP (C10) to decaprenyl diphosphate (C50).  go_component integral to membrane|GO:0016021||IEA  go_process ubiquinone biosynthetic process|GO:0006744|15604701|IGI  go_process embryonic development|GO:0009790|15604701|IMP  go_function 4-hydroxybenzoate nonaprenyltransferase activity|GO:0047293|15604701|IGI  product AtPPT1 (Arabidopsis thaliana polyprenyltransferase 1); 4-hydroxybenzoate nonaprenyltransferase  note Arabidopsis thaliana polyprenyltransferase 1 (AtPPT1); FUNCTIONS IN: 4-hydroxybenzoate nonaprenyltransferase activity; INVOLVED IN: embryonic development, ubiquinone biosynthetic process; LOCATED IN: integral to membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 4-hydroxybenzoate polyprenyl transferase (InterPro:IPR006370), UbiA prenyltransferase (InterPro:IPR000537); Has 6610 Blast hits to 6608 proteins in 1168 species: Archae - 121; Bacteria - 3037; Metazoa - 203; Fungi - 208; Plants - 61; Viruses - 0; Other Eukaryotes - 2980 (source: NCBI BLink).  protein_id AT4G23660.1p  transcript_id AT4G23660.1  protein_id AT4G23660.1p  transcript_id AT4G23660.1  
At4g23660	chr4:012330917	0.0	C/12330917-12331359,12330120-12330255,12329531-12329652,12329272-12329341,12329036-12329185,12328437-12328572,12328249-12328345,12328086-12328155	AT4G23660.2  CDS  gene_syn 4-HYDROXYBENZOATE POLYPRENYL DIPHOSPHATE TRANSFERASE, Arabidopsis thaliana polyprenyltransferase 1, AtPPT1, F9D16.130, F9D16_130  gene AtPPT1  function Encodes para-hydroxy benzoate polyprenyl diphosphate transferase. The enzyme was shown to be able to use a wide range of prenyl substrates : from GPP (C10) to decaprenyl diphosphate (C50).  go_component integral to membrane|GO:0016021||IEA  go_process ubiquinone biosynthetic process|GO:0006744|15604701|IGI  go_process embryonic development|GO:0009790|15604701|IMP  go_function 4-hydroxybenzoate nonaprenyltransferase activity|GO:0047293|15604701|IGI  product AtPPT1 (Arabidopsis thaliana polyprenyltransferase 1); 4-hydroxybenzoate nonaprenyltransferase  note Arabidopsis thaliana polyprenyltransferase 1 (AtPPT1); FUNCTIONS IN: 4-hydroxybenzoate nonaprenyltransferase activity; INVOLVED IN: embryonic development, ubiquinone biosynthetic process; LOCATED IN: integral to membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 4-hydroxybenzoate polyprenyl transferase (InterPro:IPR006370), UbiA prenyltransferase (InterPro:IPR000537); Has 6610 Blast hits to 6608 proteins in 1168 species: Archae - 121; Bacteria - 3037; Metazoa - 203; Fungi - 208; Plants - 61; Viruses - 0; Other Eukaryotes - 2980 (source: NCBI BLink).  protein_id AT4G23660.2p  transcript_id AT4G23660.2  protein_id AT4G23660.2p  transcript_id AT4G23660.2  
At4g23670	chr4:012333470	0.0	C/12333470-12333656,12332846-12333114	AT4G23670.1  CDS  gene_syn F9D16.140, F9D16_140  go_component vacuole|GO:0005773|15539469|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_process response to cadmium ion|GO:0046686|17075075|IEP  go_function copper ion binding|GO:0005507|16526091|IDA  product major latex protein-related / MLP-related  note major latex protein-related / MLP-related; FUNCTIONS IN: copper ion binding; INVOLVED IN: response to cadmium ion, response to salt stress, defense response to bacterium; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: major latex protein-related / MLP-related (TAIR:AT4G23680.1); Has 228 Blast hits to 209 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 228; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G23670.1p  transcript_id AT4G23670.1  protein_id AT4G23670.1p  transcript_id AT4G23670.1  
At4g23680	chr4:012337231	0.0	C/12337231-12337417,12336416-12336684	AT4G23680.1  CDS  gene_syn F9D16.150, F9D16_150  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product major latex protein-related / MLP-related  note major latex protein-related / MLP-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: major latex protein-related / MLP-related (TAIR:AT4G23670.1); Has 219 Blast hits to 199 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 219; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G23680.1p  transcript_id AT4G23680.1  protein_id AT4G23680.1p  transcript_id AT4G23680.1  
At4g23690	chr4:012339152	0.0	C/12339152-12339715	AT4G23690.1  CDS  gene_syn F9D16.160, F9D16_160  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_process lignan biosynthetic process|GO:0009807||ISS  go_function molecular_function|GO:0003674||ND  product disease resistance-responsive family protein / dirigent family protein  note disease resistance-responsive family protein / dirigent family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lignan biosynthetic process, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: disease resistance-responsive family protein / dirigent family protein (TAIR:AT1G64160.1); Has 431 Blast hits to 430 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 431; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G23690.1p  transcript_id AT4G23690.1  protein_id AT4G23690.1p  transcript_id AT4G23690.1  
At4g23700	chr4:012345425	0.0	C/12345425-12345616,12343887-12344888,12342534-12343802	AT4G23700.1  CDS  gene_syn ATCHX17, CATION/H+ EXCHANGER 17, CHX17, F9D16.170, F9D16_170  gene ATCHX17  function member of Putative Na+/H+ antiporter family  go_component integral to membrane|GO:0016021||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process cation transport|GO:0006812|11500563|IC  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product ATCHX17 (CATION/H+ EXCHANGER 17); monovalent cation:proton antiporter/ sodium:hydrogen antiporter  note CATION/H+ EXCHANGER 17 (ATCHX17); FUNCTIONS IN: monovalent cation:proton antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: N-terminal protein myristoylation, cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: stem, sepal, root, stamen, leaf; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: ATCHX18; monovalent cation:proton antiporter/ sodium:hydrogen antiporter (TAIR:AT5G41610.1); Has 6211 Blast hits to 6185 proteins in 1202 species: Archae - 240; Bacteria - 4531; Metazoa - 54; Fungi - 141; Plants - 298; Viruses - 0; Other Eukaryotes - 947 (source: NCBI BLink).  protein_id AT4G23700.1p  transcript_id AT4G23700.1  protein_id AT4G23700.1p  transcript_id AT4G23700.1  
At4g23710	chr4:012350577	0.0	W/12350577-12350652,12351000-12351100,12351211-12351354	AT4G23710.1  CDS  gene_syn F9D16.180, F9D16_180, VACUOLAR ATP SYNTHASE SUBUNIT G2, VAG2, VATG2, VHA-G2  gene VAG2  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process proton transport|GO:0015992||IEA  go_function hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances|GO:0016820||IEA  product VAG2; hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances  note VAG2; FUNCTIONS IN: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; INVOLVED IN: proton transport; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar (H+)-ATPase G subunit (InterPro:IPR005124); BEST Arabidopsis thaliana protein match is: VMA10 (VACUOLAR MEMBRANE ATPASE 10); hydrogen ion transporting ATP synthase, rotational mechanism (TAIR:AT3G01390.2); Has 470 Blast hits to 470 proteins in 138 species: Archae - 0; Bacteria - 2; Metazoa - 268; Fungi - 80; Plants - 75; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT4G23710.1p  transcript_id AT4G23710.1  protein_id AT4G23710.1p  transcript_id AT4G23710.1  
At4g23713	chr4:012352956	0.0	W/12352956-12353131	AT4G23713.1  miRNA  gene_syn MICRORNA 319, MICRORNA 319A, MIR319, MIR319A  gene MIR319A  function Encodes a microRNA that targets several TCP family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGGACUGAAGGGAGCUCCCU  go_component cellular_component|GO:0005575||ND  go_process gene silencing by miRNA|GO:0035195|15200956|TAS  go_function molecular_function|GO:0003674||ND  product MIR319A (MICRORNA 319A); miRNA  transcript_id AT4G23713.1  
At4g23720	chr4:012358707	0.0	W/12358707-12359648	AT4G23720.1  CDS  gene_syn F9D16.190, F9D16_190  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1191 (InterPro:IPR010605); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01140.1); Has 57 Blast hits to 57 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G23720.1p  transcript_id AT4G23720.1  protein_id AT4G23720.1p  transcript_id AT4G23720.1  
At4g23730	chr4:012362955	0.0	W/12362955-12363068,12363545-12363619,12363694-12363750,12363841-12364007,12364108-12364242,12364335-12364537,12364623-12364792	AT4G23730.1  CDS  gene_syn F9D16.200, F9D16_200  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function isomerase activity|GO:0016853||IEA  go_function carbohydrate binding|GO:0030246||IEA  go_component cellular_component|GO:0005575||ND  go_process galactose metabolic process|GO:0006012||ISS  go_function aldose 1-epimerase activity|GO:0004034||ISS  product aldose 1-epimerase family protein  note aldose 1-epimerase family protein; FUNCTIONS IN: isomerase activity, carbohydrate binding, aldose 1-epimerase activity, catalytic activity; INVOLVED IN: galactose metabolic process, carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Aldose 1-epimerase (InterPro:IPR008183), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718); BEST Arabidopsis thaliana protein match is: aldose 1-epimerase family protein (TAIR:AT3G61610.1); Has 1392 Blast hits to 1391 proteins in 571 species: Archae - 0; Bacteria - 958; Metazoa - 38; Fungi - 84; Plants - 134; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink).  protein_id AT4G23730.1p  transcript_id AT4G23730.1  protein_id AT4G23730.1p  transcript_id AT4G23730.1  
At4g23740	chr4:012367063	0.0	W/12367063-12368329,12368428-12368778,12368861-12369159	AT4G23740.1  CDS  gene_syn F9D16.210, F9D16_210  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT5G58300.2); Has 89409 Blast hits to 66066 proteins in 2176 species: Archae - 64; Bacteria - 5743; Metazoa - 28731; Fungi - 4005; Plants - 39323; Viruses - 262; Other Eukaryotes - 11281 (source: NCBI BLink).  protein_id AT4G23740.1p  transcript_id AT4G23740.1  protein_id AT4G23740.1p  transcript_id AT4G23740.1  
At4g23750	chr4:012376751	0.0	W/12376751-12377782	AT4G23750.1  CDS  gene_syn CRF2, CYTOKININ RESPONSE FACTOR 2, F9D16.220, F9D16_220  gene CRF2  function encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process transcription factor import into nucleus|GO:0042991|16832061|IDA  go_process cotyledon development|GO:0048825|16832061|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product CRF2 (CYTOKININ RESPONSE FACTOR 2); DNA binding / transcription factor  note CYTOKININ RESPONSE FACTOR 2 (CRF2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: cotyledon development, regulation of transcription, DNA-dependent, transcription factor import into nucleus; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: CRF1 (CYTOKININ RESPONSE FACTOR 1); DNA binding / transcription factor (TAIR:AT4G11140.1); Has 3828 Blast hits to 3724 proteins in 203 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 2; Plants - 3812; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT4G23750.1p  transcript_id AT4G23750.1  protein_id AT4G23750.1p  transcript_id AT4G23750.1  
At4g23750	chr4:012376751	0.0	W/12376751-12377782	AT4G23750.2  CDS  gene_syn CRF2, CYTOKININ RESPONSE FACTOR 2, F9D16.220, F9D16_220  gene CRF2  function encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process transcription factor import into nucleus|GO:0042991|16832061|IDA  go_process cotyledon development|GO:0048825|16832061|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product CRF2 (CYTOKININ RESPONSE FACTOR 2); DNA binding / transcription factor  note CYTOKININ RESPONSE FACTOR 2 (CRF2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: cotyledon development, regulation of transcription, DNA-dependent, transcription factor import into nucleus; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: CRF1 (CYTOKININ RESPONSE FACTOR 1); DNA binding / transcription factor (TAIR:AT4G11140.1); Has 3828 Blast hits to 3724 proteins in 203 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 2; Plants - 3812; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT4G23750.2p  transcript_id AT4G23750.2  protein_id AT4G23750.2p  transcript_id AT4G23750.2  
At4g23760	chr4:012379374	0.0	W/12379374-12379487,12380553-12380809,12381969-12382117,12382773-12382816	AT4G23760.1  CDS  gene_syn F9D16.230, F9D16_230  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G23760.1p  transcript_id AT4G23760.1  protein_id AT4G23760.1p  transcript_id AT4G23760.1  
At4g23770	chr4:012383726	0.0	C/12383726-12384050,12383514-12383605	AT4G23770.1  CDS  gene_syn F9D16.240, F9D16_240  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23780.1); Has 11 Blast hits to 11 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G23770.1p  transcript_id AT4G23770.1  protein_id AT4G23770.1p  transcript_id AT4G23770.1  
At4g23780	chr4:012386353	0.0	C/12386353-12386799	AT4G23780.1  CDS  gene_syn F9D16.250, F9D16_250  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23770.1); Has 46 Blast hits to 44 proteins in 22 species: Archae - 0; Bacteria - 9; Metazoa - 11; Fungi - 0; Plants - 10; Viruses - 2; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT4G23780.1p  transcript_id AT4G23780.1  protein_id AT4G23780.1p  transcript_id AT4G23780.1  
At4g23790	chr4:012387870	0.0	W/12387870-12388086,12388490-12388782,12388877-12389659	AT4G23790.1  CDS  gene_syn F9D16.260, F9D16_260  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11090.1); Has 699 Blast hits to 689 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 697; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G23790.1p  transcript_id AT4G23790.1  protein_id AT4G23790.1p  transcript_id AT4G23790.1  
At4g23800	chr4:012390228	0.0	W/12390228-12390557,12390981-12391390,12391469-12391574,12391659-12391724,12391808-12391978,12392067-12392152,12392225-12392309,12392400-12392516	AT4G23800.1  CDS  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product high mobility group (HMG1/2) family protein  note high mobility group (HMG1/2) family protein; FUNCTIONS IN: transcription factor activity; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: high mobility group (HMG1/2) family protein (TAIR:AT4G11080.1); Has 62445 Blast hits to 32833 proteins in 1549 species: Archae - 256; Bacteria - 4440; Metazoa - 33253; Fungi - 3596; Plants - 1795; Viruses - 218; Other Eukaryotes - 18887 (source: NCBI BLink).  protein_id AT4G23800.1p  transcript_id AT4G23800.1  protein_id AT4G23800.1p  transcript_id AT4G23800.1  
At4g23810	chr4:012393336	0.0	C/12393336-12393739,12392666-12393236	AT4G23810.1  CDS  gene_syn ATWRKY53, T32A16.2, WRKY53  gene WRKY53  function member of WRKY Transcription Factor; Group III  go_component chloroplast|GO:0009507|18431481|IDA  go_component nucleus|GO:0005634|17369373|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_process defense response to bacterium, incompatible interaction|GO:0009816|17977154|IMP  go_process response to chitin|GO:0010200|17722694|IEP  go_process regulation of defense response|GO:0031347|17096590|IMP  go_process positive regulation of transcription|GO:0045941|15604721|IDA  go_function DNA binding|GO:0003677|15604721|IDA  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|17096590|IMP  go_function transcription factor activity|GO:0003700||ISS  go_function protein binding|GO:0005515|17369373|IPI  go_function transcription activator activity|GO:0016563|15604721|IDA  product WRKY53; DNA binding / protein binding / transcription activator/ transcription factor  note WRKY53; FUNCTIONS IN: protein binding, transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: positive regulation of transcription, defense response to bacterium, incompatible interaction, response to chitin, regulation of transcription, DNA-dependent, regulation of defense response; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY41; transcription factor (TAIR:AT4G11070.1); Has 1891 Blast hits to 1618 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1882; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT4G23810.1p  transcript_id AT4G23810.1  protein_id AT4G23810.1p  transcript_id AT4G23810.1  
At4g23820	chr4:012399721	0.0	C/12399721-12400050,12398498-12398618,12398185-12398359,12398010-12398080,12397217-12397854	AT4G23820.1  CDS  gene_syn T32A16.3  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT5G41870.1); Has 2405 Blast hits to 2400 proteins in 312 species: Archae - 2; Bacteria - 563; Metazoa - 8; Fungi - 896; Plants - 841; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT4G23820.1p  transcript_id AT4G23820.1  protein_id AT4G23820.1p  transcript_id AT4G23820.1  
At4g23840	chr4:012400379	0.0	W/12400379-12400548,12400862-12401016,12401100-12401317,12401772-12402384,12402459-12402974,12403069-12403190	AT4G23840.1  CDS  gene_syn AT4G23830, T32A16.10, T32A16_10  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT1G15740.1); Has 7635 Blast hits to 5145 proteins in 376 species: Archae - 2; Bacteria - 2863; Metazoa - 1987; Fungi - 78; Plants - 1868; Viruses - 40; Other Eukaryotes - 797 (source: NCBI BLink).  protein_id AT4G23840.1p  transcript_id AT4G23840.1  protein_id AT4G23840.1p  transcript_id AT4G23840.1  
At4g23850	chr4:012408109	0.0	C/12408109-12408263,12407615-12407678,12407437-12407526,12407263-12407319,12407138-12407186,12406936-12407012,12406771-12406810,12406593-12406687,12406308-12406475,12406079-12406189,12405913-12406000,12405473-12405539,12405319-12405394,12405095-12405212,12404603-12404848,12404362-12404501,12404082-12404264,12403864-12403983,12403720-12403776	AT4G23850.1  CDS  gene_syn T32A16.20, T32A16_20  go_component plasma membrane|GO:0005886|17317660|IDA  go_function catalytic activity|GO:0003824||IEA  go_process fatty acid biosynthetic process|GO:0006633|9106514|TAS  product long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetase  note long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetase; FUNCTIONS IN: catalytic activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative (TAIR:AT4G11030.1); Has 34929 Blast hits to 33173 proteins in 1967 species: Archae - 465; Bacteria - 18245; Metazoa - 1999; Fungi - 1232; Plants - 1153; Viruses - 1; Other Eukaryotes - 11834 (source: NCBI BLink).  protein_id AT4G23850.1p  transcript_id AT4G23850.1  protein_id AT4G23850.1p  transcript_id AT4G23850.1  
At4g23860	chr4:012409336	0.0	W/12409336-12409419,12409784-12409942,12410042-12410314,12410402-12411154,12411247-12411336	AT4G23860.1  CDS  gene_syn T32A16.30, T32A16_30  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process biological_process|GO:0008150||ND  product PHD finger protein-related  note PHD finger protein-related; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, N-recognin, metazoa (InterPro:IPR013993), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, N-recognin (InterPro:IPR003126); Has 364 Blast hits to 340 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 208; Fungi - 84; Plants - 26; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT4G23860.1p  transcript_id AT4G23860.1  protein_id AT4G23860.1p  transcript_id AT4G23860.1  
At4g23860	chr4:012409336	0.0	W/12409336-12409419,12409784-12409942,12410042-12410314,12410402-12411154,12411247-12411336	AT4G23860.2  CDS  gene_syn T32A16.30, T32A16_30  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process biological_process|GO:0008150||ND  product PHD finger protein-related  note PHD finger protein-related; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, N-recognin, metazoa (InterPro:IPR013993), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, N-recognin (InterPro:IPR003126); Has 364 Blast hits to 340 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 208; Fungi - 84; Plants - 26; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT4G23860.2p  transcript_id AT4G23860.2  protein_id AT4G23860.2p  transcript_id AT4G23860.2  
At4g23860	chr4:012409336	0.0	W/12409336-12409419,12409784-12409942,12410042-12410314,12410402-12411154,12411247-12411336	AT4G23860.3  CDS  gene_syn T32A16.30, T32A16_30  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process biological_process|GO:0008150||ND  product PHD finger protein-related  note PHD finger protein-related; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, N-recognin, metazoa (InterPro:IPR013993), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, N-recognin (InterPro:IPR003126); Has 364 Blast hits to 340 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 208; Fungi - 84; Plants - 26; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT4G23860.3p  transcript_id AT4G23860.3  protein_id AT4G23860.3p  transcript_id AT4G23860.3  
At4g23870	chr4:012414409	0.0	W/12414409-12414759	AT4G23870.1  CDS  gene_syn T32A16.40, T32A16_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11020.1); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G23870.1p  transcript_id AT4G23870.1  protein_id AT4G23870.1p  transcript_id AT4G23870.1  
At4g23880	chr4:012415789	0.0	C/12415789-12416388	AT4G23880.1  CDS  gene_syn T32A16.50, T32A16_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 55 Blast hits to 51 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 2; Plants - 4; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT4G23880.1p  transcript_id AT4G23880.1  protein_id AT4G23880.1p  transcript_id AT4G23880.1  
At4g23882	chr4:012417553	0.0	W/12417553-12417610,12417707-12417882,12417968-12418046,12418126-12418667	AT4G23882.1  CDS  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_process metal ion transport|GO:0030001||ISS  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: metal ion binding (TAIR:AT1G30473.1); Has 1385 Blast hits to 972 proteins in 150 species: Archae - 0; Bacteria - 54; Metazoa - 317; Fungi - 142; Plants - 538; Viruses - 149; Other Eukaryotes - 185 (source: NCBI BLink).  protein_id AT4G23882.1p  transcript_id AT4G23882.1  protein_id AT4G23882.1p  transcript_id AT4G23882.1  
At4g23885	chr4:012419472	0.0	W/12419472-12419541,12419893-12420038,12420223-12420240	AT4G23885.1  CDS  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24165.1); Has 14 Blast hits to 14 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G23885.1p  transcript_id AT4G23885.1  protein_id AT4G23885.1p  transcript_id AT4G23885.1  
At4g23890	chr4:012420593	0.0	C/12420593-12421345	AT4G23890.1  CDS  gene_syn T32A16.60, T32A16_60  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 252 Blast hits to 252 proteins in 67 species: Archae - 0; Bacteria - 101; Metazoa - 15; Fungi - 4; Plants - 21; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).  protein_id AT4G23890.1p  transcript_id AT4G23890.1  protein_id AT4G23890.1p  transcript_id AT4G23890.1  
At4g23895	chr4:012422883	0.0	W/12422883-12423010,12423096-12423201,12423297-12423379,12423460-12423523,12423608-12423725,12423806-12423960,12424057-12424146	AT4G23895.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pleckstrin homology (PH) domain-containing protein-related  note pleckstrin homology (PH) domain-containing protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Pleckstrin homology (InterPro:IPR001849); Has 14 Blast hits to 14 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G23895.1p  transcript_id AT4G23895.1  protein_id AT4G23895.1p  transcript_id AT4G23895.1  
At4g23895	chr4:012422883	0.0	W/12422883-12423010,12423096-12423201,12423297-12423379,12423460-12423523,12423608-12423725,12423806-12423960,12424057-12424146	AT4G23895.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pleckstrin homology (PH) domain-containing protein-related  note pleckstrin homology (PH) domain-containing protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Pleckstrin homology (InterPro:IPR001849); Has 14 Blast hits to 14 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G23895.2p  transcript_id AT4G23895.2  protein_id AT4G23895.2p  transcript_id AT4G23895.2  
At4g23900	chr4:012424505	0.0	W/12424505-12424586,12425068-12425205,12425483-12425520,12425617-12425667,12425751-12425918,12425989-12426101,12426195-12426318	AT4G23900.1  CDS  gene_syn T32A16.70, T32A16_70  go_process GTP biosynthetic process|GO:0006183||IEA  go_process UTP biosynthetic process|GO:0006228||IEA  go_process CTP biosynthetic process|GO:0006241||IEA  go_function nucleoside diphosphate kinase activity|GO:0004550||IEA  go_function ATP binding|GO:0005524||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function nucleoside diphosphate kinase activity|GO:0004550||ISS  go_function ATP binding|GO:0005524||ISS  product nucleoside diphosphate kinase 4 (NDK4)  note nucleoside diphosphate kinase 4 (NDK4); FUNCTIONS IN: nucleoside diphosphate kinase activity, ATP binding; INVOLVED IN: UTP biosynthetic process, GTP biosynthetic process, CTP biosynthetic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside diphosphate kinase, core (InterPro:IPR001564); BEST Arabidopsis thaliana protein match is: NDPK3 (NUCLEOSIDE DIPHOSPHATE KINASE 3); ATP binding / nucleoside diphosphate kinase (TAIR:AT4G11010.1); Has 6327 Blast hits to 6229 proteins in 1550 species: Archae - 205; Bacteria - 2598; Metazoa - 838; Fungi - 116; Plants - 246; Viruses - 17; Other Eukaryotes - 2307 (source: NCBI BLink).  protein_id AT4G23900.1p  transcript_id AT4G23900.1  protein_id AT4G23900.1p  transcript_id AT4G23900.1  
At4g23910	chr4:012427055	0.0	W/12427055-12427124,12427211-12427278,12427393-12427479,12427586-12427734,12428709-12428763,12429120-12429287	AT4G23910.1  CDS  gene_syn T32A16.80, T32A16_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10970.4); Has 29 Blast hits to 29 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G23910.1p  transcript_id AT4G23910.1  protein_id AT4G23910.1p  transcript_id AT4G23910.1  
At4g23915	chr4:012429599	0.0	W/12429599-12429671	AT4G23915.1  tRNA  gene_syn 67147.TRNA-ALA-1, TRNA-ALA  function Encodes an alanine tRNA with the anticodon CGC that recognizes the alanine codon GCG.  go_process translational elongation|GO:0006414|8980477|TAS  go_process response to auxin stimulus|GO:0009733|16244142|IMP  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: CGC)  transcript_id AT4G23915.1  
At4g23920	chr4:012431416	0.0	W/12431416-12431598,12432002-12432051,12432136-12432271,12432380-12432481,12432592-12432819,12432973-12433051,12433135-12433217,12433338-12433429,12433567-12433666	AT4G23920.1  CDS  gene_syn T32A16.90, T32A16_90, UDP-D-glucose/UDP-D-galactose 4-epimerase 2, UGE2  gene UGE2  function Encodes a protein with UDP-D-glucose 4-epimerase activity. Involved in growth and cell wall carbohydrate biosynthesis.  go_component cytosol|GO:0005829|16644739|IDA  go_process cell wall biogenesis|GO:0042546|17496119|IMP  go_function UDP-glucose 4-epimerase activity|GO:0003978|16644739|IDA  go_function UDP-glucose 4-epimerase activity|GO:0003978|16644739|IGI  go_function UDP-glucose 4-epimerase activity|GO:0003978|17496119|IDA  go_function protein dimerization activity|GO:0046983|16644739|IPI  product UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2); UDP-glucose 4-epimerase/ protein dimerization  note UDP-D-glucose/UDP-D-galactose 4-epimerase 2 (UGE2); FUNCTIONS IN: UDP-glucose 4-epimerase activity, protein dimerization activity; INVOLVED IN: cell wall biogenesis; LOCATED IN: cytosol; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886); BEST Arabidopsis thaliana protein match is: UGE5 (UDP-D-glucose/UDP-D-galactose 4-epimerase 5); UDP-glucose 4-epimerase/ protein dimerization (TAIR:AT4G10960.1); Has 32148 Blast hits to 32129 proteins in 1728 species: Archae - 493; Bacteria - 15169; Metazoa - 592; Fungi - 422; Plants - 737; Viruses - 29; Other Eukaryotes - 14706 (source: NCBI BLink).  protein_id AT4G23920.1p  transcript_id AT4G23920.1  protein_id AT4G23920.1p  transcript_id AT4G23920.1  
At4g23930	chr4:012436131	0.0	C/12436131-12436694	AT4G23930.1  CDS  gene_syn T32A16.100, T32A16_100  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT1G64450.1); Has 183 Blast hits to 177 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 183; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G23930.1p  transcript_id AT4G23930.1  protein_id AT4G23930.1p  transcript_id AT4G23930.1  
At4g23930	chr4:012436527	0.0	C/12436527-12436694,12436131-12436445	AT4G23930.2  CDS  gene_syn T32A16.100, T32A16_100  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT1G64450.1); Has 80 Blast hits to 75 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G23930.2p  transcript_id AT4G23930.2  protein_id AT4G23930.2p  transcript_id AT4G23930.2  
At4g23940	chr4:012437108	0.0	W/12437108-12437799,12437894-12437978,12438142-12438576,12438661-12438714,12438808-12438873,12439135-12439230,12439671-12439799,12439880-12439932,12440050-12440245,12440419-12440533,12440671-12441029,12441122-12441234,12441323-12441572,12441644-12441841	AT4G23940.1  CDS  gene_syn T32A16.110, T32A16_110  go_component chloroplast|GO:0009507|18431481|IDA  go_process proteolysis|GO:0006508||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_function ATP binding|GO:0005524||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function metallopeptidase activity|GO:0008237||ISS  go_function ATPase activity|GO:0016887||ISS  product FtsH protease, putative  note FtsH protease, putative; FUNCTIONS IN: in 7 functions; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: VAR2 (VARIEGATED 2); ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion binding (TAIR:AT2G30950.1); Has 23547 Blast hits to 21911 proteins in 1750 species: Archae - 869; Bacteria - 6274; Metazoa - 3939; Fungi - 2345; Plants - 1658; Viruses - 20; Other Eukaryotes - 8442 (source: NCBI BLink).  protein_id AT4G23940.1p  transcript_id AT4G23940.1  protein_id AT4G23940.1p  transcript_id AT4G23940.1  
At4g23950	chr4:012442297	0.0	W/12442297-12442507,12442653-12443803,12443881-12443966,12444093-12444330	AT4G23950.1  CDS  gene_syn T32A16.120, T32A16_120  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sad1/UNC-like, C-terminal (InterPro:IPR012919), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22882.1); Has 414 Blast hits to 399 proteins in 161 species: Archae - 0; Bacteria - 58; Metazoa - 107; Fungi - 82; Plants - 53; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).  protein_id AT4G23950.1p  transcript_id AT4G23950.1  protein_id AT4G23950.1p  transcript_id AT4G23950.1  
At4g23960	chr4:012444765	0.0	W/12444765-12444908,12445099-12445323	AT4G23960.1  CDS  gene_syn T32A16.130, T32A16_130  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G10925.2); Has 24 Blast hits to 24 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G23960.1p  transcript_id AT4G23960.1  protein_id AT4G23960.1p  transcript_id AT4G23960.1  
At4g23970	chr4:012445378	0.0	C/12445378-12445680	AT4G23970.1  CDS  gene_syn T32A16.140, T32A16_140  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G23970.1p  transcript_id AT4G23970.1  protein_id AT4G23970.1p  transcript_id AT4G23970.1  
At4g23980	chr4:012451592	0.0	W/12451592-12451607,12451699-12451805,12451886-12451984,12452161-12452217,12452308-12452463,12452547-12452631,12452717-12452807,12452897-12453061,12453144-12453257,12453337-12453409,12453493-12453640,12453720-12454189,12454321-12454508,12454590-12454737	AT4G23980.1  CDS  gene_syn ARF9, AUXIN RESPONSE FACTOR 9, T32A16.150, T32A16_150  gene ARF9  function Encodes auxin response factor 9 (ARF9).  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10318972|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ARF9 (AUXIN RESPONSE FACTOR 9); transcription factor  note AUXIN RESPONSE FACTOR 9 (ARF9); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: ARF11 (AUXIN RESPONSE FACTOR 11); transcription factor (TAIR:AT2G46530.3); Has 1577 Blast hits to 1374 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 43; Fungi - 2; Plants - 1528; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G23980.1p  transcript_id AT4G23980.1  protein_id AT4G23980.1p  transcript_id AT4G23980.1  
At4g23980	chr4:012451592	0.0	W/12451592-12451607,12451699-12451805,12451886-12451984,12452161-12452217,12452308-12452463,12452547-12452631,12452717-12452807,12452897-12453061,12453144-12453257,12453337-12453409,12453493-12453640,12453726-12454189,12454321-12454508,12454590-12454737	AT4G23980.2  CDS  gene_syn ARF9, AUXIN RESPONSE FACTOR 9, T32A16.150, T32A16_150  gene ARF9  function Encodes auxin response factor 9 (ARF9).  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10318972|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ARF9 (AUXIN RESPONSE FACTOR 9); transcription factor  note AUXIN RESPONSE FACTOR 9 (ARF9); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: ARF11 (AUXIN RESPONSE FACTOR 11); transcription factor (TAIR:AT2G46530.3); Has 1578 Blast hits to 1376 proteins in 71 species: Archae - 0; Bacteria - 2; Metazoa - 43; Fungi - 2; Plants - 1527; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G23980.2p  transcript_id AT4G23980.2  protein_id AT4G23980.2p  transcript_id AT4G23980.2  
At4g23990	chr4:012456491	0.0	W/12456491-12457132,12458091-12458240,12458397-12458525,12458607-12459050,12459608-12460498	AT4G23990.1  CDS  gene_syn ATCSLG3, CELLULOSE SYNTHASE LIKE G3, CSLG3, T32A16.160, T32A16_160  gene ATCSLG3  function encodes a protein similar to cellulose synthase  go_component membrane|GO:0016020||IEA  go_process cellulose biosynthetic process|GO:0030244||IEA  go_process polysaccharide biosynthetic process|GO:0000271||ISS  go_function transferase activity|GO:0016740||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  product ATCSLG3; cellulose synthase/ transferase/ transferase, transferring glycosyl groups  note ATCSLG3; FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: cellulose biosynthetic process, polysaccharide biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: ATCSLG2; cellulose synthase/ transferase/ transferase, transferring glycosyl groups (TAIR:AT4G24000.1); Has 1732 Blast hits to 1370 proteins in 205 species: Archae - 0; Bacteria - 302; Metazoa - 0; Fungi - 14; Plants - 1384; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT4G23990.1p  transcript_id AT4G23990.1  protein_id AT4G23990.1p  transcript_id AT4G23990.1  
At4g24000	chr4:012462142	0.0	W/12462142-12462717,12463423-12463572,12463663-12463770,12463855-12464298,12464581-12465471	AT4G24000.1  CDS  gene_syn ATCSLG2, CELLULOSE SYNTHASE LIKE G2, CSLG2, T32A16.170, T32A16_170  gene ATCSLG2  function encodes a protein similar to cellulose synthase  go_component membrane|GO:0016020||IEA  go_process cellulose biosynthetic process|GO:0030244||IEA  go_process polysaccharide biosynthetic process|GO:0000271||ISS  go_function transferase activity|GO:0016740||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  product ATCSLG2; cellulose synthase/ transferase/ transferase, transferring glycosyl groups  note ATCSLG2; FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: cellulose biosynthetic process, polysaccharide biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: ATCSLG3; cellulose synthase/ transferase/ transferase, transferring glycosyl groups (TAIR:AT4G23990.1); Has 1880 Blast hits to 1493 proteins in 261 species: Archae - 0; Bacteria - 425; Metazoa - 2; Fungi - 15; Plants - 1418; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT4G24000.1p  transcript_id AT4G24000.1  protein_id AT4G24000.1p  transcript_id AT4G24000.1  
At4g24010	chr4:012466391	0.0	W/12466391-12466975,12467722-12467871,12468021-12468149,12468234-12468677,12468786-12469760	AT4G24010.1  CDS  gene_syn ATCSLG1, CELLULOSE SYNTHASE LIKE G1, CSLG1, T32A16.180, T32A16_180  gene ATCSLG1  function encodes a protein similar to cellulose synthase  go_component membrane|GO:0016020||IEA  go_process cellulose biosynthetic process|GO:0030244||IEA  go_process polysaccharide biosynthetic process|GO:0000271||ISS  go_function transferase activity|GO:0016740||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  product ATCSLG1; cellulose synthase/ transferase/ transferase, transferring glycosyl groups  note ATCSLG1; FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: cellulose biosynthetic process, polysaccharide biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, sepal, hypocotyl, flower, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: ATCSLG3; cellulose synthase/ transferase/ transferase, transferring glycosyl groups (TAIR:AT4G23990.1); Has 1958 Blast hits to 1536 proteins in 282 species: Archae - 0; Bacteria - 497; Metazoa - 2; Fungi - 10; Plants - 1429; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT4G24010.1p  transcript_id AT4G24010.1  protein_id AT4G24010.1p  transcript_id AT4G24010.1  
At4g24015	chr4:012470973	0.0	C/12470973-12471197,12470703-12470788,12469887-12470100	AT4G24015.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product zinc finger (RING-H2 type) protein-related  note zinc finger (RING-H2 type) protein-related; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G33480.1); Has 5769 Blast hits to 5754 proteins in 212 species: Archae - 0; Bacteria - 0; Metazoa - 1936; Fungi - 335; Plants - 2524; Viruses - 31; Other Eukaryotes - 943 (source: NCBI BLink).  protein_id AT4G24015.1p  transcript_id AT4G24015.1  protein_id AT4G24015.1p  transcript_id AT4G24015.1  
At4g24020	chr4:012479904	0.0	W/12479904-12480231,12480688-12481259,12481676-12481723,12481810-12482701,12482783-12483822	AT4G24020.1  CDS  gene_syn NIN LIKE PROTEIN 7, NLP7, T19F6.10, T19F6_10  gene NLP7  function Encodes NIN Like Protein 7 (NLP7). Modulates nitrate sensing and metabolism. Mutants of NLP7 show features of nitrogen-starved plants and are tolerant to drought stress. Localized in the nucleus and functions as a putative transcription factor.  go_component nucleus|GO:0005634|18826430|IEP  go_process response to water deprivation|GO:0009414|18826430|IMP  go_process stomatal movement|GO:0010118|18826430|IMP  go_process response to nitrate|GO:0010167|18826430|IMP  go_process nitrate assimilation|GO:0042128|18826430|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product NLP7 (NIN LIKE PROTEIN 7); transcription factor  note NIN LIKE PROTEIN 7 (NLP7); FUNCTIONS IN: transcription factor activity; INVOLVED IN: nitrate assimilation, response to water deprivation, response to nitrate, stomatal movement; LOCATED IN: nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: RWP-RK domain-containing protein (TAIR:AT1G64530.1); Has 369 Blast hits to 296 proteins in 35 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 12; Plants - 333; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT4G24020.1p  transcript_id AT4G24020.1  protein_id AT4G24020.1p  transcript_id AT4G24020.1  
At4g24025	chr4:012486202	0.0	C/12486202-12486272	AT4G24025.1  tRNA  gene_syn 67148.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: CCC)  transcript_id AT4G24025.1  
At4g24030	chr4:012486247	0.0	C/12486247-12486633	AT4G24030.1  CDS  gene_syn T19F6.20, T19F6_20  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G24030.1p  transcript_id AT4G24030.1  protein_id AT4G24030.1p  transcript_id AT4G24030.1  
At4g24026	chr4:012486415	0.0	W/12486415-12486651	AT4G24026.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10810.1); Has 31 Blast hits to 31 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G24026.1p  transcript_id AT4G24026.1  protein_id AT4G24026.1p  transcript_id AT4G24026.1  
At4g24040	chr4:012488242	0.0	W/12488242-12488954,12489107-12489226,12489318-12489433,12489517-12489617,12489704-12489813,12489896-12489968,12490061-12490222,12490302-12490389,12490469-12490568,12490664-12490877,12490977-12491060	AT4G24040.1  CDS  gene_syn ATTRE1, T19F6.30, T19F6_30, TRE1, TREHALASE 1  gene TRE1  function Encodes a trehalase, member of Glycoside Hydrolase Family 37.  go_process trehalose catabolic process|GO:0005993|11161063|IDA  go_function alpha,alpha-trehalase activity|GO:0004555|11161063|IDA  go_function trehalase activity|GO:0015927||ISS  product TRE1 (TREHALASE 1); alpha,alpha-trehalase/ trehalase  note TREHALASE 1 (TRE1); FUNCTIONS IN: alpha,alpha-trehalase activity, trehalase activity; INVOLVED IN: trehalose catabolic process; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 37 (InterPro:IPR001661), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 37, conserved site (InterPro:IPR018232); Has 1080 Blast hits to 1071 proteins in 363 species: Archae - 0; Bacteria - 601; Metazoa - 246; Fungi - 157; Plants - 33; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT4G24040.1p  transcript_id AT4G24040.1  protein_id AT4G24040.1p  transcript_id AT4G24040.1  
At4g24050	chr4:012497287	0.0	W/12497287-12497407,12497488-12497719,12497874-12497953,12498079-12498235,12498612-12498693,12499079-12499166,12499286-12499332,12499470-12499661	AT4G24050.1  CDS  gene_syn T19F6.40, T19F6_40  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT1G64590.1); Has 39207 Blast hits to 39168 proteins in 1814 species: Archae - 246; Bacteria - 22794; Metazoa - 3354; Fungi - 2329; Plants - 968; Viruses - 0; Other Eukaryotes - 9516 (source: NCBI BLink).  protein_id AT4G24050.1p  transcript_id AT4G24050.1  protein_id AT4G24050.1p  transcript_id AT4G24050.1  
At4g24060	chr4:012503970	0.0	W/12503970-12503993,12504413-12505417	AT4G24060.1  CDS  gene_syn T19F6.50, T19F6_50  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product Dof-type zinc finger domain-containing protein  note Dof-type zinc finger domain-containing protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT1G64620.1); Has 1558 Blast hits to 1280 proteins in 73 species: Archae - 0; Bacteria - 2; Metazoa - 176; Fungi - 18; Plants - 617; Viruses - 0; Other Eukaryotes - 745 (source: NCBI BLink).  protein_id AT4G24060.1p  transcript_id AT4G24060.1  protein_id AT4G24060.1p  transcript_id AT4G24060.1  
At4g24070	chr4:012508895	0.0	W/12508895-12509095	AT4G24070.1  CDS  gene_syn T19F6.60, T19F6_60  go_process cellular aromatic compound metabolic process|GO:0006725||IEA  go_function carbon-carbon lyase activity|GO:0016830||IEA  go_component cellular_component|GO:0005575||ND  product carbon-carbon lyase  note carbon-carbon lyase; FUNCTIONS IN: carbon-carbon lyase activity; INVOLVED IN: cellular aromatic compound metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HpcH/HpaI aldolase (InterPro:IPR005000); BEST Arabidopsis thaliana protein match is: ALL1 (Aldolase like); carbon-carbon lyase/ catalytic (TAIR:AT4G24080.1); Has 23 Blast hits to 23 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G24070.1p  transcript_id AT4G24070.1  protein_id AT4G24070.1p  transcript_id AT4G24070.1  
At4g24080	chr4:012511384	0.0	W/12511384-12511579,12511625-12511830,12511958-12512290	AT4G24080.1  CDS  gene_syn ALL1, Aldolase like, T19F6.70, T19F6_70  gene ALL1  go_function catalytic activity|GO:0003824||IEA  go_function carbon-carbon lyase activity|GO:0016830||IEA  go_component cellular_component|GO:0005575||ND  go_process cytokinin mediated signaling|GO:0009736|15995350|IMP  product ALL1 (Aldolase like); carbon-carbon lyase/ catalytic  note Aldolase like (ALL1); FUNCTIONS IN: carbon-carbon lyase activity, catalytic activity; INVOLVED IN: cytokinin mediated signaling; LOCATED IN: cellular_component unknown; EXPRESSED IN: sporophyte; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), HpcH/HpaI aldolase (InterPro:IPR005000); BEST Arabidopsis thaliana protein match is: HpcH/HpaI aldolase family protein (TAIR:AT4G10750.1); Has 2782 Blast hits to 2782 proteins in 492 species: Archae - 8; Bacteria - 1464; Metazoa - 0; Fungi - 117; Plants - 25; Viruses - 0; Other Eukaryotes - 1168 (source: NCBI BLink).  protein_id AT4G24080.1p  transcript_id AT4G24080.1  protein_id AT4G24080.1p  transcript_id AT4G24080.1  
At4g24090	chr4:012512742	0.0	W/12512742-12513128,12513578-12513938,12514289-12514467	AT4G24090.1  CDS  gene_syn T19F6.80, T19F6_80  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 95 Blast hits to 93 proteins in 48 species: Archae - 3; Bacteria - 45; Metazoa - 6; Fungi - 11; Plants - 20; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT4G24090.1p  transcript_id AT4G24090.1  protein_id AT4G24090.1p  transcript_id AT4G24090.1  
At4g24100	chr4:012515223	0.0	W/12515223-12515441,12515554-12515808,12515890-12516014,12516105-12516149,12516386-12516467,12516560-12516628,12516747-12516917,12516999-12517064,12517153-12517221,12517327-12517395,12517499-12517776,12517880-12518001,12518093-12518184,12518256-12518294,12518376-12518432,12518510-12518617,12518707-12518758,12518846-12518898,12518981-12519045,12519147-12519198,12519295-12519336	AT4G24100.1  CDS  gene_syn T19F6.90, T19F6_90  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT4G10730.1); Has 91504 Blast hits to 90179 proteins in 3094 species: Archae - 51; Bacteria - 7936; Metazoa - 40188; Fungi - 8002; Plants - 18055; Viruses - 587; Other Eukaryotes - 16685 (source: NCBI BLink).  protein_id AT4G24100.1p  transcript_id AT4G24100.1  protein_id AT4G24100.1p  transcript_id AT4G24100.1  
At4g24110	chr4:012520010	0.0	C/12520010-12520762	AT4G24110.1  CDS  gene_syn T19F6.100, T19F6_100  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; Has 49 Blast hits to 49 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G24110.1p  transcript_id AT4G24110.1  protein_id AT4G24110.1p  transcript_id AT4G24110.1  
At4g24120	chr4:012524581	0.0	W/12524581-12524968,12525222-12525489,12525568-12525702,12525793-12527023	AT4G24120.1  CDS  gene_syn ATYSL1, T19F6.110, T19F6_110, YELLOW STRIPE LIKE 1, YSL1  gene YSL1  function Member of a small family of oligopeptide transporters similar to the yellow stripe locus of maize (ZmYS1).  go_process oligopeptide transport|GO:0006857||ISS  go_process response to iron ion|GO:0010039|16297069|IEP  go_function oligopeptide transporter activity|GO:0015198||ISS  product YSL1 (YELLOW STRIPE LIKE 1); oligopeptide transporter  note YELLOW STRIPE LIKE 1 (YSL1); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport, response to iron ion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: YSL3 (YELLOW STRIPE LIKE 3); oligopeptide transporter (TAIR:AT5G53550.1); Has 985 Blast hits to 961 proteins in 279 species: Archae - 12; Bacteria - 429; Metazoa - 0; Fungi - 183; Plants - 246; Viruses - 1; Other Eukaryotes - 114 (source: NCBI BLink).  protein_id AT4G24120.1p  transcript_id AT4G24120.1  protein_id AT4G24120.1p  transcript_id AT4G24120.1  
At4g24130	chr4:012527861	0.0	W/12527861-12528155,12528245-12528423	AT4G24130.1  CDS  gene_syn T19F6.120, T19F6_120  go_component nucleus|GO:0005634|14617066|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56580.1); Has 181 Blast hits to 179 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 181; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G24130.1p  transcript_id AT4G24130.1  protein_id AT4G24130.1p  transcript_id AT4G24130.1  
At4g24140	chr4:012533393	0.0	C/12533393-12533664,12532641-12533005,12532226-12532554,12531566-12531771,12530032-12530356	AT4G24140.1  CDS  gene_syn T19F6.130, T19F6_130  go_component endomembrane system|GO:0012505||IEA  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: BDG1 (BODYGUARD1); hydrolase (TAIR:AT1G64670.1); Has 3943 Blast hits to 3942 proteins in 690 species: Archae - 8; Bacteria - 2152; Metazoa - 305; Fungi - 115; Plants - 116; Viruses - 4; Other Eukaryotes - 1243 (source: NCBI BLink).  protein_id AT4G24140.1p  transcript_id AT4G24140.1  protein_id AT4G24140.1p  transcript_id AT4G24140.1  
At4g24150	chr4:012535972	0.0	W/12535972-12536036,12536118-12536182,12537687-12537962,12538063-12538236,12538393-12538828,12538922-12539387	AT4G24150.1  CDS  gene_syn AtGRF8, GROWTH-REGULATING FACTOR 8, T19F6.140, T19F6_140  gene AtGRF8  function Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower.  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component nucleus|GO:0005634|12974814|ISS  go_process leaf development|GO:0048366|12974814|TAS  go_function transcription activator activity|GO:0016563|12974814|ISS  product AtGRF8 (GROWTH-REGULATING FACTOR 8); transcription activator  note GROWTH-REGULATING FACTOR 8 (AtGRF8); FUNCTIONS IN: transcription activator activity; INVOLVED IN: leaf development; LOCATED IN: nucleus, chloroplast envelope; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine-Leucine-Glutamine, QLQ (InterPro:IPR014978), WRC (InterPro:IPR014977); BEST Arabidopsis thaliana protein match is: AtGRF7 (GROWTH-REGULATING FACTOR 7); transcription activator (TAIR:AT5G53660.1); Has 335 Blast hits to 330 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 335; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G24150.1p  transcript_id AT4G24150.1  protein_id AT4G24150.1p  transcript_id AT4G24150.1  
At4g24160	chr4:012539871	0.0	W/12539871-12540100,12540323-12540559,12540772-12540818,12540949-12541067,12541168-12541328,12541498-12541607,12541694-12541793,12541866-12541989,12542082-12542210	AT4G24160.1  CDS  gene_syn T19F6.150, T19F6_150  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT4G36530.2); Has 8951 Blast hits to 8929 proteins in 1171 species: Archae - 61; Bacteria - 5943; Metazoa - 372; Fungi - 271; Plants - 230; Viruses - 0; Other Eukaryotes - 2074 (source: NCBI BLink).  protein_id AT4G24160.1p  transcript_id AT4G24160.1  protein_id AT4G24160.1p  transcript_id AT4G24160.1  
At4g24160	chr4:012539871	0.0	W/12539871-12540100,12540323-12540559,12540772-12540818,12540949-12541067,12541168-12541328,12541498-12541607,12541694-12541818	AT4G24160.2  CDS  gene_syn T19F6.150, T19F6_150  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT4G36530.2); Has 8769 Blast hits to 8751 proteins in 1160 species: Archae - 59; Bacteria - 5819; Metazoa - 357; Fungi - 262; Plants - 222; Viruses - 0; Other Eukaryotes - 2050 (source: NCBI BLink).  protein_id AT4G24160.2p  transcript_id AT4G24160.2  protein_id AT4G24160.2p  transcript_id AT4G24160.2  
At4g24170	chr4:012543206	0.0	W/12543206-12543362,12543445-12543534,12543609-12543709,12543793-12543912,12544007-12544088,12544182-12544249,12544318-12544505,12544597-12546805	AT4G24170.1  CDS  gene_syn T19F6.1  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product kinesin motor family protein  note kinesin motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin motor family protein (TAIR:AT5G66310.1); Has 25842 Blast hits to 19353 proteins in 769 species: Archae - 79; Bacteria - 1389; Metazoa - 11109; Fungi - 1866; Plants - 1266; Viruses - 207; Other Eukaryotes - 9926 (source: NCBI BLink).  protein_id AT4G24170.1p  transcript_id AT4G24170.1  protein_id AT4G24170.1p  transcript_id AT4G24170.1  
At4g24175	chr4:012547018	0.0	W/12547018-12547373,12547475-12547523,12547615-12547666,12547776-12547948,12548377-12548490,12548634-12548810	AT4G24175.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0307 (InterPro:IPR006839); Has 306 Blast hits to 306 proteins in 135 species: Archae - 0; Bacteria - 260; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT4G24175.1p  transcript_id AT4G24175.1  protein_id AT4G24175.1p  transcript_id AT4G24175.1  
At4g24180	chr4:012551152	0.0	C/12551152-12551221,12550356-12551068	AT4G24180.1  CDS  gene_syn T22A6.10, T22A6_10  go_component endomembrane system|GO:0012505||IEA  go_process response to other organism|GO:0051707||ISS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: thaumatin, putative (TAIR:AT4G38660.2); Has 1060 Blast hits to 1045 proteins in 143 species: Archae - 0; Bacteria - 22; Metazoa - 46; Fungi - 45; Plants - 935; Viruses - 3; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT4G24180.1p  transcript_id AT4G24180.1  protein_id AT4G24180.1p  transcript_id AT4G24180.1  
At4g24190	chr4:012555781	0.0	C/12555781-12555851,12555563-12555676,12555327-12555480,12555155-12555235,12554877-12554988,12554665-12554791,12554433-12554571,12554100-12554214,12553802-12553995,12553497-12553712,12553249-12553414,12552987-12553128,12552752-12552902,12552270-12552674,12551902-12552186	AT4G24190.2  CDS  gene_syn HEAT SHOCK PROTEIN 90.7, HSP90.7, SHD, SHEPHERD, T22A6.20, T22A6_20  gene SHD  function encodes an ortholog of GRP94, an ER-resident HSP90-like protein and is involved in regulation of meristem size and organization. Single and double mutant analyses suggest that SHD may be required for the correct folding and/or complex formation of CLV proteins. Lines carrying recessive mutations in this locus exhibits expanded shoot meristems, disorganized root meristems, and defective pollen tube elongation. Transcript is detected in all tissues examined and is not induced by heat. Endoplasmin supports the protein secretory pathway and has a role in proliferating tissues.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ATP binding|GO:0005524||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component endoplasmic reticulum|GO:0005783|11867518|ISS  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum|GO:0005783|17059403|IDA  go_process protein folding|GO:0006457||ISS  go_process protein secretion|GO:0009306|17059403|IDA  go_process response to cold|GO:0009409|14617066|IEP  go_process response to water deprivation|GO:0009414|19148673|IMP  go_process response to salt stress|GO:0009651|19148673|IMP  go_process regulation of meristem organization|GO:0009934|11867518|IMP  go_process regulation of meristem growth|GO:0010075|11867518|IMP  go_function ATP binding|GO:0005524||ISS  product SHD (SHEPHERD); ATP binding / unfolded protein binding  note SHEPHERD (SHD); FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: in 8 processes; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp90 (InterPro:IPR001404), Molecular chaperone, heat shock protein, endoplasmin (InterPro:IPR015566), ATP-binding region, ATPase-like (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: ATHSP90.1 (HEAT SHOCK PROTEIN 90.1); ATP binding / unfolded protein binding (TAIR:AT5G52640.1); Has 8427 Blast hits to 7759 proteins in 1699 species: Archae - 6; Bacteria - 2211; Metazoa - 2384; Fungi - 385; Plants - 306; Viruses - 10; Other Eukaryotes - 3125 (source: NCBI BLink).  protein_id AT4G24190.2p  transcript_id AT4G24190.2  protein_id AT4G24190.2p  transcript_id AT4G24190.2  
At4g24190	chr4:012555785	0.0	C/12555785-12555851,12555563-12555680,12555327-12555480,12555155-12555235,12554877-12554988,12554665-12554791,12554433-12554571,12554100-12554214,12553802-12553995,12553497-12553712,12553249-12553414,12552987-12553128,12552752-12552902,12552270-12552674,12551902-12552186	AT4G24190.1  CDS  gene_syn HEAT SHOCK PROTEIN 90.7, HSP90.7, SHD, SHEPHERD, T22A6.20, T22A6_20  gene SHD  function encodes an ortholog of GRP94, an ER-resident HSP90-like protein and is involved in regulation of meristem size and organization. Single and double mutant analyses suggest that SHD may be required for the correct folding and/or complex formation of CLV proteins. Lines carrying recessive mutations in this locus exhibits expanded shoot meristems, disorganized root meristems, and defective pollen tube elongation. Transcript is detected in all tissues examined and is not induced by heat. Endoplasmin supports the protein secretory pathway and has a role in proliferating tissues.  go_component nucleus|GO:0005634|14617066|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ATP binding|GO:0005524||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component endoplasmic reticulum|GO:0005783|11867518|ISS  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum|GO:0005783|17059403|IDA  go_process protein folding|GO:0006457||ISS  go_process protein secretion|GO:0009306|17059403|IDA  go_process response to cold|GO:0009409|14617066|IEP  go_process response to water deprivation|GO:0009414|19148673|IMP  go_process response to salt stress|GO:0009651|19148673|IMP  go_process regulation of meristem organization|GO:0009934|11867518|IMP  go_process regulation of meristem growth|GO:0010075|11867518|IMP  go_function ATP binding|GO:0005524||ISS  product SHD (SHEPHERD); ATP binding / unfolded protein binding  note SHEPHERD (SHD); FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: in 8 processes; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp90 (InterPro:IPR001404), Molecular chaperone, heat shock protein, endoplasmin (InterPro:IPR015566), ATP-binding region, ATPase-like (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: ATHSP90.1 (HEAT SHOCK PROTEIN 90.1); ATP binding / unfolded protein binding (TAIR:AT5G52640.1); Has 8425 Blast hits to 7759 proteins in 1699 species: Archae - 6; Bacteria - 2211; Metazoa - 2385; Fungi - 383; Plants - 309; Viruses - 10; Other Eukaryotes - 3121 (source: NCBI BLink).  protein_id AT4G24190.1p  transcript_id AT4G24190.1  protein_id AT4G24190.1p  transcript_id AT4G24190.1  
At4g24200	chr4:012556927	0.0	C/12556927-12559929	AT4G24200.1  CDS  gene_syn T22A6.30, T22A6_30  go_component mitochondrion|GO:0005739|14671022|IDA  product unknown protein  note LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: TFIIS N-terminal (InterPro:IPR017923); BEST Arabidopsis thaliana protein match is: DNA binding / protein binding / transcription regulator (TAIR:AT3G48050.2); Has 1007 Blast hits to 471 proteins in 129 species: Archae - 0; Bacteria - 216; Metazoa - 191; Fungi - 150; Plants - 70; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink).  protein_id AT4G24200.1p  transcript_id AT4G24200.1  protein_id AT4G24200.1p  transcript_id AT4G24200.1  
At4g24204	chr4:012562069	0.0	C/12562069-12562440	AT4G24204.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G38185.3); Has 1711 Blast hits to 1679 proteins in 175 species: Archae - 0; Bacteria - 0; Metazoa - 1095; Fungi - 35; Plants - 176; Viruses - 130; Other Eukaryotes - 275 (source: NCBI BLink).  protein_id AT4G24204.1p  transcript_id AT4G24204.1  protein_id AT4G24204.1p  transcript_id AT4G24204.1  
At4g24204	chr4:012562553	0.0	C/12562553-12562646,12562069-12562448	AT4G24204.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G38185.3); Has 1718 Blast hits to 1686 proteins in 175 species: Archae - 0; Bacteria - 0; Metazoa - 1099; Fungi - 35; Plants - 177; Viruses - 130; Other Eukaryotes - 277 (source: NCBI BLink).  protein_id AT4G24204.2p  transcript_id AT4G24204.2  protein_id AT4G24204.2p  transcript_id AT4G24204.2  
At4g24204	chr4:012562729	0.0	C/12562729-12562815,12562553-12562622,12562069-12562448	AT4G24204.3  CDS  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G38185.3); Has 1718 Blast hits to 1686 proteins in 175 species: Archae - 0; Bacteria - 0; Metazoa - 1099; Fungi - 35; Plants - 177; Viruses - 130; Other Eukaryotes - 277 (source: NCBI BLink).  protein_id AT4G24204.3p  transcript_id AT4G24204.3  protein_id AT4G24204.3p  transcript_id AT4G24204.3  
At4g24210	chr4:012563658	0.0	W/12563658-12564113	AT4G24210.1  CDS  gene_syn SLEEPY1, SLY1, T22A6.40, T22A6_40  gene SLY1  function F-box protein that is involved in GA signaling. Regulates seed germination. Component of E3 ubiquitin complex. Interacts with DELLA proteins.  go_component nucleus|GO:0005634|15155881|IDA  go_component Rik1-E3 ubiquitin ligase complex|GO:0043494|15161962|IPI  go_process seed germination|GO:0009845|17384169|IMP  go_process positive regulation of gibberellic acid mediated signaling|GO:0009939|12724538|IMP  go_process seed dormancy|GO:0010162|17384169|IMP  go_function molecular_function|GO:0003674||ND  product SLY1 (SLEEPY1)  note SLEEPY1 (SLY1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: positive regulation of gibberellic acid mediated signaling, seed germination, seed dormancy; LOCATED IN: Rik1-E3 ubiquitin ligase complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: SLY2 (SLEEPY2) (TAIR:AT5G48170.1); Has 59 Blast hits to 59 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G24210.1p  transcript_id AT4G24210.1  protein_id AT4G24210.1p  transcript_id AT4G24210.1  
At4g24220	chr4:012565219	0.0	W/12565219-12565257,12565347-12566474	AT4G24220.1  CDS  gene_syn AWI31, T22A6.50, T22A6_50, VEIN PATTERNING 1, VEP1  gene VEP1  function encodes a novel protein containing mammalian death domain involved in programmed cell death. Gene is expressed in vascular system and mutants carrying dominant mutation in the gene have defective vascular patterning. Gene expression is induced specifically by wounding.  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process response to wounding|GO:0009611|11917087|IEP  go_process response to wounding|GO:0009611|9085278|IEP  go_process xylem and phloem pattern formation|GO:0010051|11917087|IMP  product VEP1 (VEIN PATTERNING 1); binding / catalytic  note VEIN PATTERNING 1 (VEP1); FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: xylem and phloem pattern formation, response to wounding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: wound-responsive protein-related (TAIR:AT5G58750.1); Has 439 Blast hits to 437 proteins in 120 species: Archae - 0; Bacteria - 132; Metazoa - 0; Fungi - 103; Plants - 122; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT4G24220.1p  transcript_id AT4G24220.1  protein_id AT4G24220.1p  transcript_id AT4G24220.1  
At4g24220	chr4:012565219	0.0	W/12565219-12565257,12565350-12566474	AT4G24220.2  CDS  gene_syn AWI31, T22A6.50, T22A6_50, VEIN PATTERNING 1, VEP1  gene VEP1  function encodes a novel protein containing mammalian death domain involved in programmed cell death. Gene is expressed in vascular system and mutants carrying dominant mutation in the gene have defective vascular patterning. Gene expression is induced specifically by wounding.  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process response to wounding|GO:0009611|11917087|IEP  go_process response to wounding|GO:0009611|9085278|IEP  go_process xylem and phloem pattern formation|GO:0010051|11917087|IMP  product VEP1 (VEIN PATTERNING 1); binding / catalytic  note VEIN PATTERNING 1 (VEP1); FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: xylem and phloem pattern formation, response to wounding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: wound-responsive protein-related (TAIR:AT5G58750.1); Has 439 Blast hits to 437 proteins in 120 species: Archae - 0; Bacteria - 132; Metazoa - 0; Fungi - 103; Plants - 122; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT4G24220.2p  transcript_id AT4G24220.2  protein_id AT4G24220.2p  transcript_id AT4G24220.2  
At4g24230	chr4:012567895	0.0	C/12567895-12568754,12567455-12567560,12567240-12567362	AT4G24230.2  CDS  gene_syn ACBP3, ACYL-COA-BINDING DOMAIN 3, T22A6.60, T22A6_60  gene ACBP3  function acyl-CoA-binding protein ACBP3. Localized extracellularly in transiently expressed tobacco BY-2 cells and onion epidermal cells. Binds arachidonyl-CoA with high affinity.  go_component extracellular region|GO:0005576|16231156|IDA  go_process fatty acid transport|GO:0015908|16231156|TAS  go_function acyl-CoA binding|GO:0000062|16231156|IDA  go_function acyl-CoA binding|GO:0000062||ISS  product ACBP3 (ACYL-COA-BINDING DOMAIN 3); acyl-CoA binding  note ACYL-COA-BINDING DOMAIN 3 (ACBP3); FUNCTIONS IN: acyl-CoA binding; INVOLVED IN: fatty acid transport; LOCATED IN: extracellular region; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Acyl-CoA-binding protein, ACBP (InterPro:IPR000582), FERM/acyl-CoA-binding protein, 3-helical bundle (InterPro:IPR014352); BEST Arabidopsis thaliana protein match is: ACBP1 (ACYL-COA BINDING PROTEIN 1); acyl-CoA binding / lead ion binding (TAIR:AT5G53470.1); Has 2514 Blast hits to 1879 proteins in 307 species: Archae - 3; Bacteria - 344; Metazoa - 1068; Fungi - 145; Plants - 202; Viruses - 30; Other Eukaryotes - 722 (source: NCBI BLink).  protein_id AT4G24230.2p  transcript_id AT4G24230.2  protein_id AT4G24230.2p  transcript_id AT4G24230.2  
At4g24230	chr4:012567895	0.0	C/12567895-12568754,12567455-12567560,12567240-12567362	AT4G24230.3  CDS  gene_syn ACBP3, ACYL-COA-BINDING DOMAIN 3, T22A6.60, T22A6_60  gene ACBP3  function acyl-CoA-binding protein ACBP3. Localized extracellularly in transiently expressed tobacco BY-2 cells and onion epidermal cells. Binds arachidonyl-CoA with high affinity.  go_component extracellular region|GO:0005576|16231156|IDA  go_process fatty acid transport|GO:0015908|16231156|TAS  go_function acyl-CoA binding|GO:0000062|16231156|IDA  go_function acyl-CoA binding|GO:0000062||ISS  product ACBP3 (ACYL-COA-BINDING DOMAIN 3); acyl-CoA binding  note ACYL-COA-BINDING DOMAIN 3 (ACBP3); FUNCTIONS IN: acyl-CoA binding; INVOLVED IN: fatty acid transport; LOCATED IN: extracellular region; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Acyl-CoA-binding protein, ACBP (InterPro:IPR000582), FERM/acyl-CoA-binding protein, 3-helical bundle (InterPro:IPR014352); BEST Arabidopsis thaliana protein match is: ACBP1 (ACYL-COA BINDING PROTEIN 1); acyl-CoA binding / lead ion binding (TAIR:AT5G53470.1); Has 2514 Blast hits to 1879 proteins in 307 species: Archae - 3; Bacteria - 344; Metazoa - 1068; Fungi - 145; Plants - 202; Viruses - 30; Other Eukaryotes - 722 (source: NCBI BLink).  protein_id AT4G24230.3p  transcript_id AT4G24230.3  protein_id AT4G24230.3p  transcript_id AT4G24230.3  
At4g24230	chr4:012567895	0.0	C/12567895-12568754,12567455-12567560,12567240-12567362	AT4G24230.4  CDS  gene_syn ACBP3, ACYL-COA-BINDING DOMAIN 3, T22A6.60, T22A6_60  gene ACBP3  function acyl-CoA-binding protein ACBP3. Localized extracellularly in transiently expressed tobacco BY-2 cells and onion epidermal cells. Binds arachidonyl-CoA with high affinity.  go_component extracellular region|GO:0005576|16231156|IDA  go_process fatty acid transport|GO:0015908|16231156|TAS  go_function acyl-CoA binding|GO:0000062|16231156|IDA  go_function acyl-CoA binding|GO:0000062||ISS  product ACBP3 (ACYL-COA-BINDING DOMAIN 3); acyl-CoA binding  note ACYL-COA-BINDING DOMAIN 3 (ACBP3); FUNCTIONS IN: acyl-CoA binding; INVOLVED IN: fatty acid transport; LOCATED IN: extracellular region; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Acyl-CoA-binding protein, ACBP (InterPro:IPR000582), FERM/acyl-CoA-binding protein, 3-helical bundle (InterPro:IPR014352); BEST Arabidopsis thaliana protein match is: ACBP1 (ACYL-COA BINDING PROTEIN 1); acyl-CoA binding / lead ion binding (TAIR:AT5G53470.1); Has 2514 Blast hits to 1879 proteins in 307 species: Archae - 3; Bacteria - 344; Metazoa - 1068; Fungi - 145; Plants - 202; Viruses - 30; Other Eukaryotes - 722 (source: NCBI BLink).  protein_id AT4G24230.4p  transcript_id AT4G24230.4  protein_id AT4G24230.4p  transcript_id AT4G24230.4  
At4g24230	chr4:012567895	0.0	C/12567895-12568754,12567455-12567560,12567240-12567362	AT4G24230.5  CDS  gene_syn ACBP3, ACYL-COA-BINDING DOMAIN 3, T22A6.60, T22A6_60  gene ACBP3  function acyl-CoA-binding protein ACBP3. Localized extracellularly in transiently expressed tobacco BY-2 cells and onion epidermal cells. Binds arachidonyl-CoA with high affinity.  go_component extracellular region|GO:0005576|16231156|IDA  go_process fatty acid transport|GO:0015908|16231156|TAS  go_function acyl-CoA binding|GO:0000062|16231156|IDA  go_function acyl-CoA binding|GO:0000062||ISS  product ACBP3 (ACYL-COA-BINDING DOMAIN 3); acyl-CoA binding  note ACYL-COA-BINDING DOMAIN 3 (ACBP3); FUNCTIONS IN: acyl-CoA binding; INVOLVED IN: fatty acid transport; LOCATED IN: extracellular region; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Acyl-CoA-binding protein, ACBP (InterPro:IPR000582), FERM/acyl-CoA-binding protein, 3-helical bundle (InterPro:IPR014352); BEST Arabidopsis thaliana protein match is: ACBP1 (ACYL-COA BINDING PROTEIN 1); acyl-CoA binding / lead ion binding (TAIR:AT5G53470.1); Has 2514 Blast hits to 1879 proteins in 307 species: Archae - 3; Bacteria - 344; Metazoa - 1068; Fungi - 145; Plants - 202; Viruses - 30; Other Eukaryotes - 722 (source: NCBI BLink).  protein_id AT4G24230.5p  transcript_id AT4G24230.5  protein_id AT4G24230.5p  transcript_id AT4G24230.5  
At4g24230	chr4:012567895	0.0	C/12567895-12568754,12567455-12567560,12567251-12567362,12567122-12567138	AT4G24230.1  CDS  gene_syn ACBP3, ACYL-COA-BINDING DOMAIN 3, T22A6.60, T22A6_60  gene ACBP3  function acyl-CoA-binding protein ACBP3. Localized extracellularly in transiently expressed tobacco BY-2 cells and onion epidermal cells. Binds arachidonyl-CoA with high affinity.  go_component extracellular region|GO:0005576|16231156|IDA  go_process fatty acid transport|GO:0015908|16231156|TAS  go_function acyl-CoA binding|GO:0000062|16231156|IDA  go_function acyl-CoA binding|GO:0000062||ISS  product ACBP3 (ACYL-COA-BINDING DOMAIN 3); acyl-CoA binding  note ACYL-COA-BINDING DOMAIN 3 (ACBP3); FUNCTIONS IN: acyl-CoA binding; INVOLVED IN: fatty acid transport; LOCATED IN: extracellular region; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Acyl-CoA-binding protein, ACBP (InterPro:IPR000582), FERM/acyl-CoA-binding protein, 3-helical bundle (InterPro:IPR014352); BEST Arabidopsis thaliana protein match is: ACBP1 (ACYL-COA BINDING PROTEIN 1); acyl-CoA binding / lead ion binding (TAIR:AT5G53470.1); Has 2511 Blast hits to 1886 proteins in 306 species: Archae - 5; Bacteria - 342; Metazoa - 1067; Fungi - 142; Plants - 200; Viruses - 30; Other Eukaryotes - 725 (source: NCBI BLink).  protein_id AT4G24230.1p  transcript_id AT4G24230.1  protein_id AT4G24230.1p  transcript_id AT4G24230.1  
At4g24230	chr4:012567895	0.0	C/12567895-12568754,12567455-12567560,12567251-12567362,12567122-12567144	AT4G24230.6  CDS  gene_syn ACBP3, ACYL-COA-BINDING DOMAIN 3, T22A6.60, T22A6_60  gene ACBP3  function acyl-CoA-binding protein ACBP3. Localized extracellularly in transiently expressed tobacco BY-2 cells and onion epidermal cells. Binds arachidonyl-CoA with high affinity.  go_component extracellular region|GO:0005576|16231156|IDA  go_process fatty acid transport|GO:0015908|16231156|TAS  go_function acyl-CoA binding|GO:0000062|16231156|IDA  go_function acyl-CoA binding|GO:0000062||ISS  product ACBP3 (ACYL-COA-BINDING DOMAIN 3); acyl-CoA binding  note ACYL-COA-BINDING DOMAIN 3 (ACBP3); FUNCTIONS IN: acyl-CoA binding; INVOLVED IN: fatty acid transport; LOCATED IN: extracellular region; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Acyl-CoA-binding protein, ACBP (InterPro:IPR000582), FERM/acyl-CoA-binding protein, 3-helical bundle (InterPro:IPR014352); BEST Arabidopsis thaliana protein match is: ACBP1 (ACYL-COA BINDING PROTEIN 1); acyl-CoA binding / lead ion binding (TAIR:AT5G53470.1); Has 2041 Blast hits to 1712 proteins in 287 species: Archae - 7; Bacteria - 312; Metazoa - 846; Fungi - 114; Plants - 176; Viruses - 25; Other Eukaryotes - 561 (source: NCBI BLink).  protein_id AT4G24230.6p  transcript_id AT4G24230.6  protein_id AT4G24230.6p  transcript_id AT4G24230.6  
At4g24231	chr4:012568875	0.0	W/12568875-12569024	AT4G24231.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G24231.1p  transcript_id AT4G24231.1  protein_id AT4G24231.1p  transcript_id AT4G24231.1  
At4g24240	chr4:012571930	0.0	W/12571930-12572705,12572808-12572933,12573287-12573446	AT4G24240.1  CDS  gene_syn ATWRKY7, T22A6.70, T22A6_70, WRKY7  gene WRKY7  function Encodes a Ca-dependent calmodulin binding protein. Sequence similarity to the WRKY transcription factor gene family.  go_component nucleus|GO:0005634|10785665|IC  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function calmodulin binding|GO:0005516|15733871|IDA  go_function calmodulin binding|GO:0005516|15733871|IPI  product WRKY7; calmodulin binding / transcription factor  note WRKY7; FUNCTIONS IN: transcription factor activity, calmodulin binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY, Zn-cluster (InterPro:IPR018872); BEST Arabidopsis thaliana protein match is: WRKY11; calmodulin binding / transcription factor (TAIR:AT4G31550.1); Has 2107 Blast hits to 1742 proteins in 122 species: Archae - 0; Bacteria - 2; Metazoa - 40; Fungi - 2; Plants - 1942; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).  protein_id AT4G24240.1p  transcript_id AT4G24240.1  protein_id AT4G24240.1p  transcript_id AT4G24240.1  
At4g24250	chr4:012577398	0.0	C/12577398-12577517,12577256-12577313,12576965-12577176,12576763-12576879,12576598-12576652,12576404-12576519,12576235-12576309,12576058-12576146,12575868-12575958,12575573-12575779,12575409-12575476,12575265-12575325,12575008-12575175	AT4G24250.1  CDS  gene_syn ATMLO13, MILDEW RESISTANCE LOCUS O 13, MLO13, T22A6.80, T22A6_80  gene MLO13  function A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO13 belongs to the clade II, with ATMLO1 and ATMLO15. The gene is expressed during early seedling growth, in root and cotyledon vascular system, in pollen and also in placenta of developing siliques, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).  go_component integral to membrane|GO:0016021||IEA  go_process cell death|GO:0008219||IEA  go_component plasma membrane|GO:0005886||ISS  go_process defense response|GO:0006952||ISS  go_process cell death|GO:0008219||ISS  go_function calmodulin binding|GO:0005516||ISS  product MLO13 (MILDEW RESISTANCE LOCUS O 13); calmodulin binding  note MILDEW RESISTANCE LOCUS O 13 (MLO13); FUNCTIONS IN: calmodulin binding; INVOLVED IN: cell death, defense response; LOCATED IN: integral to membrane, plasma membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: seedling growth, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326); BEST Arabidopsis thaliana protein match is: MLO1; calmodulin binding (TAIR:AT4G02600.2); Has 303 Blast hits to 295 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G24250.1p  transcript_id AT4G24250.1  protein_id AT4G24250.1p  transcript_id AT4G24250.1  
At4g24260	chr4:012579761	0.0	C/12579761-12580133,12579370-12579683,12578829-12579293,12578607-12578742,12578354-12578526,12577871-12578272	AT4G24260.1  CDS  gene_syn ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A3, ATGH9A3, KOR3, T22A6.90, T22A6_90  gene ATGH9A3  function Encodes a protein with similarity to endo-1,4-b-glucanases. KOR3 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia.  go_component plasma membrane|GO:0005886|17317660|IDA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_process response to nematode|GO:0009624|18069944|IEP  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product ATGH9A3 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A3); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds  note ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A3 (ATGH9A3); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: response to nematode; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1); cellulase/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT5G49720.1); Has 1069 Blast hits to 1062 proteins in 179 species: Archae - 0; Bacteria - 279; Metazoa - 137; Fungi - 14; Plants - 613; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT4G24260.1p  transcript_id AT4G24260.1  protein_id AT4G24260.1p  transcript_id AT4G24260.1  
At4g24265	chr4:012580740	0.0	C/12580740-12581162	AT4G24265.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G24265.1p  transcript_id AT4G24265.1  protein_id AT4G24265.1p  transcript_id AT4G24265.1  
At4g24270	chr4:012587081	0.0	C/12587081-12587293,12586717-12586850,12586517-12586571,12586042-12586257,12585471-12585746,12585111-12585245,12584859-12584984,12584638-12584682,12584441-12584545,12584066-12584208,12583812-12583935,12583404-12583478,12582785-12583120,12582591-12582683,12582108-12582252,12581765-12581994	AT4G24270.1  CDS  gene_syn T22A6.100, T22A6_100  go_component intracellular|GO:0005622||IEA  go_process RNA processing|GO:0006396||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lsm interaction (InterPro:IPR008669), RNA-processing protein, HAT helix (InterPro:IPR003107), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: crooked neck protein, putative / cell cycle protein, putative (TAIR:AT5G45990.1); Has 5153 Blast hits to 4726 proteins in 406 species: Archae - 0; Bacteria - 560; Metazoa - 2266; Fungi - 1149; Plants - 584; Viruses - 0; Other Eukaryotes - 594 (source: NCBI BLink).  protein_id AT4G24270.1p  transcript_id AT4G24270.1  protein_id AT4G24270.1p  transcript_id AT4G24270.1  
At4g24270	chr4:012587081	0.0	C/12587081-12587293,12586717-12586850,12586517-12586571,12586042-12586257,12585471-12585746,12585111-12585245,12584859-12584984,12584638-12584682,12584441-12584545,12584066-12584208,12583812-12583935,12583404-12583478,12582785-12583120,12582591-12582683,12582108-12582252,12581765-12581997	AT4G24270.2  CDS  gene_syn T22A6.100, T22A6_100  go_component intracellular|GO:0005622||IEA  go_process RNA processing|GO:0006396||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lsm interaction (InterPro:IPR008669), RNA-processing protein, HAT helix (InterPro:IPR003107), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: crooked neck protein, putative / cell cycle protein, putative (TAIR:AT5G45990.1); Has 4983 Blast hits to 4560 proteins in 400 species: Archae - 0; Bacteria - 544; Metazoa - 2191; Fungi - 1136; Plants - 551; Viruses - 0; Other Eukaryotes - 561 (source: NCBI BLink).  protein_id AT4G24270.2p  transcript_id AT4G24270.2  protein_id AT4G24270.2p  transcript_id AT4G24270.2  
At4g24275	chr4:012588579	0.0	W/12588579-12588959	AT4G24275.1  CDS  function Identified as a screen for stress-responsive genes.  go_component cellular_component|GO:0005575||ND  go_process response to stress|GO:0006950|16856987|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: cellular_component unknown; Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G24275.1p  transcript_id AT4G24275.1  protein_id AT4G24275.1p  transcript_id AT4G24275.1  
At4g24280	chr4:012590094	0.0	W/12590094-12590675,12591005-12591257,12591392-12591471,12591579-12591721,12591808-12591906,12592036-12592225,12592374-12592772,12593027-12593437	AT4G24280.1  CDS  gene_syn T22A6.110, T22A6_110, chloroplast heat shock protein 70-1, cpHsc70-1  gene cpHsc70-1  go_component nucleus|GO:0005634|14617066|IDA  go_component mitochondrion|GO:0005739|17137349|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ATP binding|GO:0005524|17137349|IDA  go_component plastid stroma|GO:0009532|11402207|TAS  go_process protein folding|GO:0006457|11402207|TAS  go_process response to heat|GO:0009408|11402207|IEP  go_process response to cold|GO:0009409|14617066|IEP  product cpHsc70-1 (chloroplast heat shock protein 70-1); ATP binding  note chloroplast heat shock protein 70-1 (cpHsc70-1); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to cadmium ion, response to cold, response to heat; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Chaperone DnaK (InterPro:IPR012725), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: CPHSC70-2EAT SHOCK PROTEIN 70-2 (CHLOROPLAST HEAT SHOCK PROTEIN 70-2); ATP binding / unfolded protein binding (TAIR:AT5G49910.1); Has 26366 Blast hits to 26267 proteins in 3135 species: Archae - 103; Bacteria - 10457; Metazoa - 2944; Fungi - 1164; Plants - 700; Viruses - 286; Other Eukaryotes - 10712 (source: NCBI BLink).  protein_id AT4G24280.1p  transcript_id AT4G24280.1  protein_id AT4G24280.1p  transcript_id AT4G24280.1  
At4g24290	chr4:012594856	0.0	W/12594856-12595119,12595302-12595540,12595790-12595991,12596156-12596224,12596312-12596498,12596809-12596975,12597123-12597815	AT4G24290.2  CDS  gene_syn T22A6.120, T22A6_120  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Membrane attack complex component/perforin/complement C9 (InterPro:IPR001862); BEST Arabidopsis thaliana protein match is: NSL1 (necrotic spotted lesions 1) (TAIR:AT1G28380.1); Has 150 Blast hits to 149 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 41; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G24290.2p  transcript_id AT4G24290.2  protein_id AT4G24290.2p  transcript_id AT4G24290.2  
At4g24290	chr4:012594856	0.0	W/12594856-12595119,12595302-12595540,12595790-12595991,12596156-12596224,12596312-12596590	AT4G24290.1  CDS  gene_syn T22A6.120, T22A6_120  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Membrane attack complex component/perforin/complement C9 (InterPro:IPR001862); BEST Arabidopsis thaliana protein match is: NSL1 (necrotic spotted lesions 1) (TAIR:AT1G28380.1); Has 124 Blast hits to 124 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 41; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G24290.1p  transcript_id AT4G24290.1  protein_id AT4G24290.1p  transcript_id AT4G24290.1  
At4g24300	chr4:012600107	0.0	C/12600107-12600213,12599846-12600026,12599651-12599758,12598980-12599021	AT4G24300.1  CDS  gene_syn T22A6.130, T22A6_130  go_component nucleus|GO:0005634||IEA  go_process proteolysis|GO:0006508||IEA  go_function peptidase activity|GO:0008233||IEA  product peptidase  note peptidase; FUNCTIONS IN: peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Peptidase C50, separase (InterPro:IPR005314); BEST Arabidopsis thaliana protein match is: AESP (ARABIDOPSIS HOMOLOG OF SEPARASE); peptidase (TAIR:AT4G22970.1); Has 9 Blast hits to 9 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G24300.1p  transcript_id AT4G24300.1  protein_id AT4G24300.1p  transcript_id AT4G24300.1  
At4g24310	chr4:012600900	0.0	W/12600900-12601541	AT4G24310.1  CDS  gene_syn T22A6.140, T22A6_140  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF679 (InterPro:IPR007770); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02430.1); Has 153 Blast hits to 146 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G24310.1p  transcript_id AT4G24310.1  protein_id AT4G24310.1p  transcript_id AT4G24310.1  
At4g24320	chr4:012602298	0.0	C/12602298-12603485	AT4G24320.1  CDS  gene_syn T22A6.150, T22A6_150  go_component intracellular|GO:0005622||IEA  go_component mitochondrion|GO:0005739||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  product ubiquitin thiolesterase  note ubiquitin thiolesterase; FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: mitochondrion, intracellular; CONTAINS InterPro DOMAIN/s: Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (InterPro:IPR001578); BEST Arabidopsis thaliana protein match is: ubiquitin thiolesterase (TAIR:AT1G71850.1); Has 214 Blast hits to 214 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 214; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G24320.1p  transcript_id AT4G24320.1  protein_id AT4G24320.1p  transcript_id AT4G24320.1  
At4g24330	chr4:012605228	0.0	C/12605228-12606229,12604163-12604366,12603848-12604078	AT4G24330.1  CDS  gene_syn T22A6.160, T22A6_160  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1682 (InterPro:IPR012879); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49945.1); Has 305 Blast hits to 294 proteins in 115 species: Archae - 0; Bacteria - 14; Metazoa - 132; Fungi - 69; Plants - 23; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT4G24330.1p  transcript_id AT4G24330.1  protein_id AT4G24330.1p  transcript_id AT4G24330.1  
At4g24340	chr4:012607475	0.0	W/12607475-12607727,12607866-12607933,12608163-12608318,12608414-12608617,12608708-12608887,12608993-12609148	AT4G24340.1  CDS  gene_syn T22A6.170, T22A6_170  go_component endomembrane system|GO:0012505||IEA  go_process nucleoside metabolic process|GO:0009116||IEA  go_function catalytic activity|GO:0003824||IEA  go_process nucleoside metabolic process|GO:0009116||ISS  go_function catalytic activity|GO:0003824||ISS  product phosphorylase family protein  note phosphorylase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: nucleoside metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Nucleoside phosphorylase (InterPro:IPR000845), Nucleoside phosphorylase, family 1 (InterPro:IPR018017); BEST Arabidopsis thaliana protein match is: phosphorylase family protein (TAIR:AT4G24350.1); Has 1548 Blast hits to 1540 proteins in 672 species: Archae - 0; Bacteria - 1437; Metazoa - 0; Fungi - 4; Plants - 62; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT4G24340.1p  transcript_id AT4G24340.1  protein_id AT4G24340.1p  transcript_id AT4G24340.1  
At4g24350	chr4:012609637	0.0	W/12609637-12609874,12610008-12610075,12610371-12610526,12610609-12610818,12610917-12611096,12611170-12611328	AT4G24350.1  CDS  gene_syn T22A6.180, T22A6_180  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_function catalytic activity|GO:0003824||IEA  go_process response to wounding|GO:0009611|17675405|IEP  go_function nutrient reservoir activity|GO:0045735||ISS  product phosphorylase family protein  note phosphorylase family protein; FUNCTIONS IN: catalytic activity, nutrient reservoir activity; INVOLVED IN: response to wounding; LOCATED IN: plant-type cell wall; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside phosphorylase (InterPro:IPR000845), Nucleoside phosphorylase, family 1 (InterPro:IPR018017); BEST Arabidopsis thaliana protein match is: phosphorylase family protein (TAIR:AT4G24340.1); Has 1246 Blast hits to 1222 proteins in 533 species: Archae - 2; Bacteria - 1140; Metazoa - 0; Fungi - 2; Plants - 62; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT4G24350.1p  transcript_id AT4G24350.1  protein_id AT4G24350.1p  transcript_id AT4G24350.1  
At4g24350	chr4:012610060	0.0	W/12610060-12610075,12610363-12610526,12610609-12610818,12610917-12611096,12611170-12611328	AT4G24350.2  CDS  gene_syn T22A6.180, T22A6_180  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_function catalytic activity|GO:0003824||IEA  go_process response to wounding|GO:0009611|17675405|IEP  go_function nutrient reservoir activity|GO:0045735||ISS  product phosphorylase family protein  note phosphorylase family protein; FUNCTIONS IN: catalytic activity, nutrient reservoir activity; INVOLVED IN: response to wounding; LOCATED IN: plant-type cell wall; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside phosphorylase (InterPro:IPR000845), Nucleoside phosphorylase, family 1 (InterPro:IPR018017); BEST Arabidopsis thaliana protein match is: phosphorylase family protein (TAIR:AT4G24340.1); Has 648 Blast hits to 648 proteins in 289 species: Archae - 0; Bacteria - 563; Metazoa - 0; Fungi - 2; Plants - 62; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT4G24350.2p  transcript_id AT4G24350.2  protein_id AT4G24350.2p  transcript_id AT4G24350.2  
At4g24370	chr4:012611608	0.0	C/12611608-12612102	AT4G24370.1  CDS  gene_syn T22A6.200, T22A6_200  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 22 Blast hits to 22 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G24370.1p  transcript_id AT4G24370.1  protein_id AT4G24370.1p  transcript_id AT4G24370.1  
At4g24380	chr4:012612554	0.0	W/12612554-12612778,12612855-12612953,12613035-12613076,12613161-12613290,12613378-12613586	AT4G24380.1  CDS  gene_syn T22A6.210, T22A6_210  go_process 10-formyltetrahydrofolate biosynthetic process|GO:0009257||IEA  go_process folic acid and derivative biosynthetic process|GO:0009396||IEA  product unknown protein  note unknown protein; INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF341 (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65400.1); Has 484 Blast hits to 484 proteins in 112 species: Archae - 0; Bacteria - 2; Metazoa - 89; Fungi - 296; Plants - 68; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT4G24380.1p  transcript_id AT4G24380.1  protein_id AT4G24380.1p  transcript_id AT4G24380.1  
At4g24380	chr4:012612554	0.0	W/12612554-12612778,12612855-12612953,12613035-12613076,12613161-12613310	AT4G24380.2  CDS  gene_syn T22A6.210, T22A6_210  product unknown protein  note unknown protein; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF341 (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65400.1); Has 407 Blast hits to 407 proteins in 104 species: Archae - 0; Bacteria - 2; Metazoa - 86; Fungi - 241; Plants - 61; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT4G24380.2p  transcript_id AT4G24380.2  protein_id AT4G24380.2p  transcript_id AT4G24380.2  
At4g24390	chr4:012615365	0.0	C/12615365-12615966,12614777-12615275,12613909-12614679	AT4G24390.1  CDS  gene_syn T22A6.220, T22A6_220  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product F-box family protein (FBX14)  note F-box family protein (FBX14); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: AFB5 (Auxin F-Box protein 5); ubiquitin-protein ligase (TAIR:AT5G49980.1); Has 1205 Blast hits to 952 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 467; Fungi - 8; Plants - 680; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT4G24390.1p  transcript_id AT4G24390.1  protein_id AT4G24390.1p  transcript_id AT4G24390.1  
At4g24390	chr4:012615365	0.0	C/12615365-12615966,12614777-12615275,12613909-12614679	AT4G24390.2  CDS  gene_syn T22A6.220, T22A6_220  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product F-box family protein (FBX14)  note F-box family protein (FBX14); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: AFB5 (Auxin F-Box protein 5); ubiquitin-protein ligase (TAIR:AT5G49980.1); Has 1205 Blast hits to 952 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 467; Fungi - 8; Plants - 680; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT4G24390.2p  transcript_id AT4G24390.2  protein_id AT4G24390.2p  transcript_id AT4G24390.2  
At4g24400	chr4:012617379	0.0	W/12617379-12617537,12617622-12617684,12617778-12617849,12617935-12618042,12618117-12618191,12618290-12618343,12618423-12618548,12618819-12618908,12619281-12619403,12619565-12619681,12619795-12619911,12620075-12620131,12620215-12620289,12620380-12620481	AT4G24400.1  CDS  gene_syn CBL-INTERACTING PROTEIN KINASE 8, CIPK8, PKS11, PROTEIN KINASE 11, SNF1-RELATED PROTEIN KINASE 3.13, SnRK3.13, T22A6.230, T22A6_230  gene CIPK8  function Encodes a CBL (calcineurin B-like calcium sensor proteins) -interacting serine/threonine protein kinase.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468|12029080|TAS  go_function protein kinase activity|GO:0004672|12029080|TAS  go_function kinase activity|GO:0016301||ISS  product CIPK8 (CBL-INTERACTING PROTEIN KINASE 8); kinase/ protein kinase  note CBL-INTERACTING PROTEIN KINASE 8 (CIPK8); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: SOS2 (SALT OVERLY SENSITIVE 2); kinase/ protein kinase (TAIR:AT5G35410.1); Has 96898 Blast hits to 95249 proteins in 3304 species: Archae - 81; Bacteria - 8660; Metazoa - 42144; Fungi - 8806; Plants - 18293; Viruses - 487; Other Eukaryotes - 18427 (source: NCBI BLink).  protein_id AT4G24400.1p  transcript_id AT4G24400.1  protein_id AT4G24400.1p  transcript_id AT4G24400.1  
At4g24400	chr4:012617379	0.0	W/12617379-12617537,12617622-12617684,12617778-12617849,12617935-12618042,12618117-12618191,12618290-12618343,12618423-12618548,12618819-12618908,12619281-12619403,12619565-12619681,12619795-12619911,12620075-12620131,12620264-12620289,12620380-12620443	AT4G24400.2  CDS  gene_syn CBL-INTERACTING PROTEIN KINASE 8, CIPK8, PKS11, PROTEIN KINASE 11, SNF1-RELATED PROTEIN KINASE 3.13, SnRK3.13, T22A6.230, T22A6_230  gene CIPK8  function Encodes a CBL (calcineurin B-like calcium sensor proteins) -interacting serine/threonine protein kinase.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468|12029080|TAS  go_function protein kinase activity|GO:0004672|12029080|TAS  go_function kinase activity|GO:0016301||ISS  product CIPK8 (CBL-INTERACTING PROTEIN KINASE 8); kinase/ protein kinase  note CBL-INTERACTING PROTEIN KINASE 8 (CIPK8); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), NAF/FISL domain (InterPro:IPR018451), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: SOS2 (SALT OVERLY SENSITIVE 2); kinase/ protein kinase (TAIR:AT5G35410.1); Has 96888 Blast hits to 95249 proteins in 3303 species: Archae - 81; Bacteria - 8660; Metazoa - 42141; Fungi - 8810; Plants - 18277; Viruses - 487; Other Eukaryotes - 18432 (source: NCBI BLink).  protein_id AT4G24400.2p  transcript_id AT4G24400.2  protein_id AT4G24400.2p  transcript_id AT4G24400.2  
At4g24410	chr4:012623530	0.0	C/12623530-12624039	AT4G24410.1  CDS  gene_syn T22A6.240, T22A6_240  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G24410.1p  transcript_id AT4G24410.1  protein_id AT4G24410.1p  transcript_id AT4G24410.1  
At4g24415	chr4:012623536	0.0	W/12623536-12626432	AT4G24415.1  miRNA  gene_syn MICRORNA824A, MIR824A  gene MIR824A  function Encodes a microRNA that targets AGL16. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UAGACCAUUUGUGAGAAGGGA  product MIR824A (MICRORNA824A); miRNA  transcript_id AT4G24415.1  
At4g24415	chr4:012623554	0.0	W/12623554-12626253	AT4G24415.2  miRNA  gene_syn MICRORNA824A, MIR824A  gene MIR824A  function Encodes a microRNA that targets AGL16. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UAGACCAUUUGUGAGAAGGGA  product MIR824A (MICRORNA824A); miRNA  transcript_id AT4G24415.2  
At4g24415	chr4:012623595	0.0	W/12623595-12624417	AT4G24415.3  miRNA  gene_syn MICRORNA824A, MIR824A  gene MIR824A  function Encodes a microRNA that targets AGL16. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UAGACCAUUUGUGAGAAGGGA  product MIR824A (MICRORNA824A); miRNA  transcript_id AT4G24415.3  
At4g24420	chr4:012627096	0.0	W/12627096-12627359	AT4G24420.1  CDS  gene_syn T22A6.250, T22A6_250  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G24420.1p  transcript_id AT4G24420.1  protein_id AT4G24420.1p  transcript_id AT4G24420.1  
At4g24430	chr4:012630018	0.0	W/12630018-12630062,12630153-12630274,12630361-12630420,12630497-12630616,12630692-12630811,12630887-12631199,12631285-12631443,12631526-12631632,12631730-12631820,12631912-12632053,12632157-12632313,12632400-12632516,12632588-12632975	AT4G24430.1  CDS  gene_syn T22A6.260, T22A6_260  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  go_function lyase activity|GO:0016829||ISS  product lyase  note lyase; FUNCTIONS IN: lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325), Carbohydrate-binding-like fold (InterPro:IPR013784), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: lyase (TAIR:AT1G09890.1); Has 131 Blast hits to 128 proteins in 36 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 49; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G24430.1p  transcript_id AT4G24430.1  protein_id AT4G24430.1p  transcript_id AT4G24430.1  
At4g24440	chr4:012633460	0.0	W/12633460-12633588,12633688-12633738,12634413-12634553	AT4G24440.1  CDS  gene_syn T22A6.270, T22A6_270  go_component transcription factor TFIIA complex|GO:0005672||IEA  go_process transcription initiation from RNA polymerase II promoter|GO:0006367||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  go_component transcription factor TFIIA complex|GO:0005672||ISS  go_process transcription initiation from RNA polymerase II promoter|GO:0006367||ISS  go_function RNA polymerase II transcription factor activity|GO:0003702||ISS  product transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)  note transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S); FUNCTIONS IN: RNA polymerase II transcription factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: transcription factor TFIIA complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor IIA, gamma subunit (InterPro:IPR003194), Transcription factor IIA, beta-barrel (InterPro:IPR009088), Transcription initiation factor IIA, gamma subunit, N-terminal (InterPro:IPR015872), Transcription initiation factor IIA, gamma subunit, C-terminal (InterPro:IPR015871), Transcription factor IIA, helical (InterPro:IPR009083); Has 411 Blast hits to 411 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 93; Plants - 150; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT4G24440.1p  transcript_id AT4G24440.1  protein_id AT4G24440.1p  transcript_id AT4G24440.1  
At4g24440	chr4:012633460	0.0	W/12633460-12633588,12633688-12633738,12634413-12634553	AT4G24440.2  CDS  gene_syn T22A6.270, T22A6_270  go_component transcription factor TFIIA complex|GO:0005672||IEA  go_process transcription initiation from RNA polymerase II promoter|GO:0006367||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  go_component transcription factor TFIIA complex|GO:0005672||ISS  go_process transcription initiation from RNA polymerase II promoter|GO:0006367||ISS  go_function RNA polymerase II transcription factor activity|GO:0003702||ISS  product transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)  note transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S); FUNCTIONS IN: RNA polymerase II transcription factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: transcription factor TFIIA complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor IIA, gamma subunit (InterPro:IPR003194), Transcription factor IIA, beta-barrel (InterPro:IPR009088), Transcription initiation factor IIA, gamma subunit, N-terminal (InterPro:IPR015872), Transcription initiation factor IIA, gamma subunit, C-terminal (InterPro:IPR015871), Transcription factor IIA, helical (InterPro:IPR009083); Has 411 Blast hits to 411 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 93; Plants - 150; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT4G24440.2p  transcript_id AT4G24440.2  protein_id AT4G24440.2p  transcript_id AT4G24440.2  
At4g24450	chr4:012635761	0.0	W/12635761-12635814,12635888-12635997,12636074-12636137,12636218-12636309,12636402-12636552,12636647-12636952,12637089-12637199,12637278-12637376,12637482-12637616,12637711-12637799,12637894-12638028,12638106-12638268,12638387-12638476,12638667-12638852,12639081-12639140,12639253-12639297,12639407-12639466,12639565-12639717,12639824-12639907,12640000-12640176,12640264-12640370,12640495-12640708,12640798-12640901,12640983-12641112,12641196-12641321,12641444-12641554,12641640-12641732,12641809-12641982,12642063-12642155,12642236-12642351,12642427-12642631	AT4G24450.1  CDS  gene_syn ATGWD2, GWD3, PHOSPHOGLUCAN, WATER DIKINASE, PWD, T22A6.280, T22A6_280  gene PWD  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process phosphorylation|GO:0016310||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||IEA  product PWD (PHOSPHOGLUCAN, WATER DIKINASE); ATP binding / kinase  note PHOSPHOGLUCAN, WATER DIKINASE (PWD); FUNCTIONS IN: kinase activity, ATP binding; INVOLVED IN: phosphorylation; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate phosphate dikinase, PEP/pyruvate-binding (InterPro:IPR002192); BEST Arabidopsis thaliana protein match is: SEX1 (STARCH EXCESS 1); alpha-glucan, water dikinase (TAIR:AT1G10760.1); Has 968 Blast hits to 950 proteins in 384 species: Archae - 116; Bacteria - 652; Metazoa - 0; Fungi - 2; Plants - 109; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT4G24450.1p  transcript_id AT4G24450.1  protein_id AT4G24450.1p  transcript_id AT4G24450.1  
At4g24460	chr4:012642888	0.0	W/12642888-12643285,12643371-12643516,12643594-12643631,12643711-12643826,12644151-12644250,12644343-12644378,12644466-12644516,12644722-12644845,12644935-12645060,12645150-12645310	AT4G24460.1  CDS  gene_syn T22A6.290, T22A6_290  go_component chloroplast|GO:0009507|18431481|IDA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19380.1); Has 122 Blast hits to 122 proteins in 41 species: Archae - 0; Bacteria - 21; Metazoa - 3; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT4G24460.1p  transcript_id AT4G24460.1  protein_id AT4G24460.1p  transcript_id AT4G24460.1  
At4g24470	chr4:012645785	0.0	W/12645785-12646090,12646247-12646336,12646421-12646554,12647025-12647132,12647242-12647347,12647465-12647524,12647609-12647734	AT4G24470.1  CDS  gene_syn T22A6.300, T22A6_300, TIFY1, ZIM, Zinc-finger protein expressed in Inflorescence Meristem  gene TIFY1  function ZIM is a putative transcription factor containing an atypical GATA-type zinc-finger motif.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634|10945256|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product TIFY1; transcription factor  note TIFY1; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Tify (InterPro:IPR010399), Zinc finger, GATA-type (InterPro:IPR000679), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: TIFY2A; sequence-specific DNA binding / transcription factor/ zinc ion binding (TAIR:AT1G51600.2); Has 929 Blast hits to 918 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 451; Plants - 430; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT4G24470.1p  transcript_id AT4G24470.1  protein_id AT4G24470.1p  transcript_id AT4G24470.1  
At4g24470	chr4:012645785	0.0	W/12645785-12646090,12646247-12646336,12646421-12646554,12647025-12647132,12647242-12647347,12647465-12647524,12647609-12647734	AT4G24470.2  CDS  gene_syn T22A6.300, T22A6_300, TIFY1, ZIM, Zinc-finger protein expressed in Inflorescence Meristem  gene TIFY1  function ZIM is a putative transcription factor containing an atypical GATA-type zinc-finger motif.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634|10945256|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product TIFY1; transcription factor  note Zinc-finger protein expressed in Inflorescence Meristem (ZIM); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Tify (InterPro:IPR010399), CCT domain (InterPro:IPR010402), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: TIFY2A; sequence-specific DNA binding / transcription factor/ zinc ion binding (TAIR:AT1G51600.2); Has 929 Blast hits to 918 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 451; Plants - 430; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT4G24470.2p  transcript_id AT4G24470.2  protein_id AT4G24470.2p  transcript_id AT4G24470.2  
At4g24480	chr4:012650410	0.0	W/12650410-12651267,12651357-12651655,12651749-12651893,12651997-12652112,12652488-12652696,12652790-12653194,12653293-12653333,12653420-12653503,12653578-12653678,12653759-12653864,12653931-12654029,12654126-12654194,12654284-12654415,12654528-12654755	AT4G24480.1  CDS  gene_syn T22A6.310, T22A6_310  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  product serine/threonine protein kinase, putative  note serine/threonine protein kinase, putative; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1); kinase/ protein binding / protein serine/threonine kinase/ protein serine/threonine/tyrosine kinase (TAIR:AT5G03730.2); Has 84626 Blast hits to 83310 proteins in 3213 species: Archae - 47; Bacteria - 6763; Metazoa - 38110; Fungi - 6771; Plants - 18285; Viruses - 390; Other Eukaryotes - 14260 (source: NCBI BLink).  protein_id AT4G24480.1p  transcript_id AT4G24480.1  protein_id AT4G24480.1p  transcript_id AT4G24480.1  
At4g24490	chr4:012657988	0.0	C/12657988-12658103,12657713-12657875,12657463-12657623,12657271-12657375,12656403-12657152,12656141-12656321,12655790-12655961,12655330-12655718	AT4G24490.1  CDS  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function protein prenyltransferase activity|GO:0008318||IEA  product protein prenyltransferase  note protein prenyltransferase; FUNCTIONS IN: protein prenyltransferase activity; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein prenyltransferase (InterPro:IPR008940), Protein prenyltransferase, alpha subunit (InterPro:IPR002088); BEST Arabidopsis thaliana protein match is: geranylgeranyl transferase alpha subunit-related / RAB geranylgeranyltransferase alpha subunit-related (TAIR:AT5G41820.1); Has 2932 Blast hits to 2359 proteins in 263 species: Archae - 17; Bacteria - 285; Metazoa - 1694; Fungi - 296; Plants - 206; Viruses - 2; Other Eukaryotes - 432 (source: NCBI BLink).  protein_id AT4G24490.1p  transcript_id AT4G24490.1  protein_id AT4G24490.1p  transcript_id AT4G24490.1  
At4g24490	chr4:012657988	0.0	C/12657988-12658103,12657713-12657875,12657463-12657623,12657271-12657375,12656403-12657152,12656141-12656321,12655790-12655961,12655330-12655718	AT4G24490.2  CDS  go_function protein prenyltransferase activity|GO:0008318||IEA  product protein prenyltransferase  note protein prenyltransferase; FUNCTIONS IN: protein prenyltransferase activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein prenyltransferase (InterPro:IPR008940), Protein prenyltransferase, alpha subunit (InterPro:IPR002088); BEST Arabidopsis thaliana protein match is: geranylgeranyl transferase alpha subunit-related / RAB geranylgeranyltransferase alpha subunit-related (TAIR:AT5G41820.1); Has 2932 Blast hits to 2359 proteins in 263 species: Archae - 17; Bacteria - 285; Metazoa - 1694; Fungi - 296; Plants - 206; Viruses - 2; Other Eukaryotes - 432 (source: NCBI BLink).  protein_id AT4G24490.2p  transcript_id AT4G24490.2  protein_id AT4G24490.2p  transcript_id AT4G24490.2  
At4g24500	chr4:012658732	0.0	W/12658732-12658904,12658992-12659044,12659565-12660211	AT4G24500.2  CDS  gene_syn F22K18.300, F22K18_300  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; Has 219 Blast hits to 216 proteins in 57 species: Archae - 0; Bacteria - 9; Metazoa - 120; Fungi - 38; Plants - 42; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT4G24500.2p  transcript_id AT4G24500.2  protein_id AT4G24500.2p  transcript_id AT4G24500.2  
At4g24500	chr4:012658732	0.0	W/12658732-12659044,12659565-12660211	AT4G24500.1  CDS  gene_syn F22K18.300, F22K18_300  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; Has 285 Blast hits to 283 proteins in 80 species: Archae - 0; Bacteria - 10; Metazoa - 159; Fungi - 48; Plants - 40; Viruses - 3; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT4G24500.1p  transcript_id AT4G24500.1  protein_id AT4G24500.1p  transcript_id AT4G24500.1  
At4g24510	chr4:012660929	0.0	W/12660929-12661375,12661719-12662537	AT4G24510.1  CDS  gene_syn CER2, ECERIFERUM 2, F22K18.290, F22K18_290, VC-2, VC2  gene CER2  function Involved in C28 to C30 fatty acid elongation.  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component nucleus|GO:0005634|9390429|IDA  go_process wax biosynthetic process|GO:0010025|8820603|IMP  go_function transferase activity|GO:0016740||ISS  product CER2 (ECERIFERUM 2); transferase/ transferase, transferring acyl groups other than amino-acyl groups  note ECERIFERUM 2 (CER2); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: wax biosynthetic process; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT3G23840.1); Has 627 Blast hits to 627 proteins in 66 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 7; Plants - 618; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G24510.1p  transcript_id AT4G24510.1  protein_id AT4G24510.1p  transcript_id AT4G24510.1  
At4g24520	chr4:012666764	0.0	C/12666764-12667066,12666585-12666644,12666427-12666503,12666282-12666339,12666114-12666197,12665996-12666032,12665722-12665791,12665370-12665561,12665192-12665284,12664552-12664777,12664367-12664450,12664136-12664287,12663940-12664036,12663642-12663869,12663429-12663551,12663232-12663345,12663065-12663145	AT4G24520.1  CDS  gene_syn AR1, ARABIDOPSIS CYTOCHROME REDUCTASE, ARABIDOPSIS P450 REDUCTASE 1, ATR1, F22K18.280, F22K18_280  gene ATR1  function Encodes a cyp450 reductase likely to be involved in phenylpropanoid metabolism.  go_component endoplasmic reticulum|GO:0005783|9235908|IDA  go_process response to oxidative stress|GO:0006979|9501110|IEP  go_process phenylpropanoid metabolic process|GO:0009698|9235908|IDA  go_function NADPH-hemoprotein reductase activity|GO:0003958|9235908|IDA  product ATR1 (ARABIDOPSIS P450 REDUCTASE 1); NADPH-hemoprotein reductase  note ARABIDOPSIS P450 REDUCTASE 1 (ATR1); FUNCTIONS IN: NADPH-hemoprotein reductase activity; INVOLVED IN: phenylpropanoid metabolic process, response to oxidative stress; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Flavodoxin-like (InterPro:IPR001094), Flavodoxin/nitric oxide synthase (InterPro:IPR008254), Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), FAD-binding, type 1 (InterPro:IPR003097), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), NADPH Cytochrome P450 Reductase (InterPro:IPR015702); BEST Arabidopsis thaliana protein match is: ATR2 (ARABIDOPSIS P450 REDUCTASE 2); NADPH-hemoprotein reductase (TAIR:AT4G30210.2); Has 4415 Blast hits to 4131 proteins in 954 species: Archae - 4; Bacteria - 1773; Metazoa - 905; Fungi - 591; Plants - 414; Viruses - 0; Other Eukaryotes - 728 (source: NCBI BLink).  protein_id AT4G24520.1p  transcript_id AT4G24520.1  protein_id AT4G24520.1p  transcript_id AT4G24520.1  
At4g24530	chr4:012669573	0.0	C/12669573-12669713,12669420-12669482,12669256-12669337,12669084-12669154,12668927-12669015,12668647-12668850,12668144-12668414,12667424-12668062	AT4G24530.1  CDS  gene_syn F22K18.270, F22K18_270  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65470.1); Has 438 Blast hits to 425 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 438; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G24530.1p  transcript_id AT4G24530.1  protein_id AT4G24530.1p  transcript_id AT4G24530.1  
At4g24540	chr4:012673464	0.0	C/12673464-12673645,12672668-12672749,12672339-12672400,12671773-12671872,12671620-12671661,12671494-12671535,12671261-12671394,12671160-12671178	AT4G24540.1  CDS  gene_syn AGAMOUS-LIKE 24, AGL24, F22K18.260, F22K18_260  gene AGL24  function Encodes a MADS-box protein involved in flowering. Regulates the expression of SOC1 and is also upregulated by SOC1. Binds with IMK3 kinase domain. Phosphorylated by IMK3; likely to be a target for IMK3 kinase domain.  go_component nucleus|GO:0005634||IEA  go_process maintenance of floral meristem identity|GO:0010076|18694458|IGI  go_process floral meristem determinacy|GO:0010582|18694458|IGI  go_process floral whorl development|GO:0048438|16679456|IGI  go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|12609028|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function protein binding|GO:0005515||NAS  go_function protein homodimerization activity|GO:0042803|16679456|IPI  go_function sequence-specific DNA binding|GO:0043565|18339670|IPI  go_function protein heterodimerization activity|GO:0046982|16679456|IPI  product AGL24 (AGAMOUS-LIKE 24); protein binding / protein heterodimerization/ protein homodimerization/ sequence-specific DNA binding / transcription factor  note AGAMOUS-LIKE 24 (AGL24); FUNCTIONS IN: protein binding, transcription factor activity, sequence-specific DNA binding, protein heterodimerization activity, protein homodimerization activity; INVOLVED IN: maintenance of floral meristem identity, floral whorl development, floral meristem determinacy, regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: SVP (SHORT VEGETATIVE PHASE); transcription factor/ translation repressor, nucleic acid binding (TAIR:AT2G22540.1); Has 5208 Blast hits to 5205 proteins in 693 species: Archae - 3; Bacteria - 8; Metazoa - 572; Fungi - 210; Plants - 4358; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT4G24540.1p  transcript_id AT4G24540.1  protein_id AT4G24540.1p  transcript_id AT4G24540.1  
At4g24550	chr4:012675873	0.0	W/12675873-12675933,12676269-12676363,12676434-12676637,12676762-12676878,12676946-12677074,12677264-12677390,12677703-12677803,12677884-12677988,12678084-12678178,12678335-12678422,12678510-12678570,12678654-12678727,12678805-12678903	AT4G24550.2  CDS  gene_syn F22K18.250, F22K18_250  go_component membrane coat|GO:0030117||IEA  go_component clathrin adaptor complex|GO:0030131||IEA  go_process transport|GO:0006810||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function protein binding|GO:0005515||IEA  go_component clathrin vesicle coat|GO:0030125||ISS  go_process intracellular protein transport|GO:0006886||ISS  product clathrin adaptor complexes medium subunit family protein  note clathrin adaptor complexes medium subunit family protein; FUNCTIONS IN: protein binding; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport; LOCATED IN: membrane coat, clathrin vesicle coat, clathrin adaptor complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968), Clathrin adaptor, mu subunit (InterPro:IPR001392), Clathrin adaptor, sigma subunit/coatomer, zeta subunit (InterPro:IPR000804), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: clathrin adaptor complexes medium subunit family protein (TAIR:AT5G46630.1); Has 1549 Blast hits to 1524 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 875; Fungi - 294; Plants - 96; Viruses - 0; Other Eukaryotes - 284 (source: NCBI BLink).  protein_id AT4G24550.2p  transcript_id AT4G24550.2  protein_id AT4G24550.2p  transcript_id AT4G24550.2  
At4g24550	chr4:012675873	0.0	W/12675873-12675933,12676269-12676363,12676434-12676637,12676762-12676878,12676946-12677074,12677264-12677390,12677703-12677803,12677884-12677988,12678084-12678178,12678335-12678426,12678510-12678526	AT4G24550.1  CDS  gene_syn F22K18.250, F22K18_250  go_component membrane coat|GO:0030117||IEA  go_component clathrin adaptor complex|GO:0030131||IEA  go_process transport|GO:0006810||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function protein binding|GO:0005515||IEA  go_component clathrin vesicle coat|GO:0030125||ISS  go_process intracellular protein transport|GO:0006886||ISS  product clathrin adaptor complexes medium subunit family protein  note clathrin adaptor complexes medium subunit family protein; FUNCTIONS IN: protein binding; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport; LOCATED IN: membrane coat, clathrin vesicle coat, clathrin adaptor complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968), Clathrin adaptor, mu subunit (InterPro:IPR001392), Clathrin adaptor, sigma subunit/coatomer, zeta subunit (InterPro:IPR000804), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: clathrin adaptor complexes medium subunit family protein (TAIR:AT5G46630.2); Has 1499 Blast hits to 1476 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 837; Fungi - 289; Plants - 95; Viruses - 0; Other Eukaryotes - 278 (source: NCBI BLink).  protein_id AT4G24550.1p  transcript_id AT4G24550.1  protein_id AT4G24550.1p  transcript_id AT4G24550.1  
At4g24560	chr4:012684248	0.0	C/12684248-12684528,12682542-12683823,12682351-12682436,12682138-12682223,12681870-12682032,12681649-12681772,12681405-12681562,12680912-12680996,12680606-12680815,12680082-12680143,12679493-12679982	AT4G24560.1  CDS  gene_syn F22K18.240, F22K18_240, UBIQUITIN-SPECIFIC PROTEASE 16, UBP16  gene UBP16  function Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation.  go_component endomembrane system|GO:0012505||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process cell proliferation|GO:0008283|18485060|IGI  go_process flower development|GO:0009908|18485060|IGI  go_process root development|GO:0048364|18485060|IGI  go_process leaf development|GO:0048366|18485060|IGI  go_process shoot development|GO:0048367|18485060|IGI  go_function ubiquitin-specific protease activity|GO:0004843||ISS  product UBP16 (UBIQUITIN-SPECIFIC PROTEASE 16); ubiquitin thiolesterase/ ubiquitin-specific protease/ zinc ion binding  note UBIQUITIN-SPECIFIC PROTEASE 16 (UBP16); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: flower development, cell proliferation, shoot development, leaf development, root development; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: UBP17 (UBIQUITIN-SPECIFIC PROTEASE 17); cysteine-type endopeptidase/ ubiquitin thiolesterase/ zinc ion binding (TAIR:AT5G65450.1); Has 9186 Blast hits to 5980 proteins in 226 species: Archae - 2; Bacteria - 214; Metazoa - 4620; Fungi - 971; Plants - 632; Viruses - 5; Other Eukaryotes - 2742 (source: NCBI BLink).  protein_id AT4G24560.1p  transcript_id AT4G24560.1  protein_id AT4G24560.1p  transcript_id AT4G24560.1  
At4g24565	chr4:012686139	0.0	W/12686139-12686220	AT4G24565.1  tRNA  gene_syn 67150.TRNA-SER-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: GCT)  transcript_id AT4G24565.1  
At4g24570	chr4:012686546	0.0	W/12686546-12687487	AT4G24570.1  CDS  gene_syn F22K18.230, F22K18_230  go_component mitochondrial inner membrane|GO:0005743||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function binding|GO:0005488||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: UCP5 (UNCOUPLING PROTEIN 5); binding (TAIR:AT2G22500.1); Has 15369 Blast hits to 9513 proteins in 356 species: Archae - 0; Bacteria - 0; Metazoa - 7655; Fungi - 4171; Plants - 2183; Viruses - 0; Other Eukaryotes - 1360 (source: NCBI BLink).  protein_id AT4G24570.1p  transcript_id AT4G24570.1  protein_id AT4G24570.1p  transcript_id AT4G24570.1  
At4g24580	chr4:012694138	0.0	C/12694138-12694248,12693967-12694035,12693410-12693446,12693051-12693127,12692597-12692667,12692426-12692504,12692147-12692291,12691751-12691867,12691591-12691668,12691448-12691503,12691300-12691369,12690848-12690932,12690505-12690748,12690060-12690326,12689642-12689929,12689498-12689556,12689313-12689373,12689118-12689201,12688907-12689020,12688651-12688820,12688490-12688553,12688273-12688425,12687879-12688199	AT4G24580.1  CDS  gene_syn F22K18.220, F22K18_220, REN1, ROP1 ENHANCER 1  gene REN1  function Encodes a Rho GTPase-activating protein that interacts with ROP1 (a Rho GTPase) and regulates pollen tube development. This protein can be observed at the apical tip of growing pollen tubes and on endocytic vesicles traveling to this region of the pollen tube.  go_component cell cortex|GO:0005938|19108776|IDA  go_component endocytic vesicle|GO:0030139|19108776|IDA  go_component apical part of cell|GO:0045177|19108776|IDA  go_component exocytic vesicle|GO:0070382|19108776|IDA  go_process signal transduction|GO:0007165|15358268|ISS  go_process pollen germination|GO:0009846|19108776|IMP  go_process pollen tube adhesion|GO:0009865|19108776|IMP  go_process activation of Rho GTPase activity|GO:0032862|19108776|IDA  go_process negative regulation of Rho protein signal transduction|GO:0035024|19108776|IMP  go_process pollen tube development|GO:0048868|19108776|IMP  go_function Rho GTPase activator activity|GO:0005100|19108776|IDA  go_function Rho GTPase activator activity|GO:0005100||ISS  go_function Rho GTPase binding|GO:0017048|19108776|IPI  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product REN1 (ROP1 ENHANCER 1); Rho GTPase activator/ Rho GTPase binding / phosphoinositide binding  note ROP1 ENHANCER 1 (REN1); FUNCTIONS IN: Rho GTPase binding, Rho GTPase activator activity, phosphoinositide binding; INVOLVED IN: in 6 processes; LOCATED IN: cell cortex, exocytic vesicle, endocytic vesicle, apical part of cell; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Rho GTPase activation protein (InterPro:IPR008936), RhoGAP (InterPro:IPR000198), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein (TAIR:AT5G19390.4); Has 24638 Blast hits to 16683 proteins in 915 species: Archae - 103; Bacteria - 4981; Metazoa - 11479; Fungi - 2161; Plants - 701; Viruses - 110; Other Eukaryotes - 5103 (source: NCBI BLink).  protein_id AT4G24580.1p  transcript_id AT4G24580.1  protein_id AT4G24580.1p  transcript_id AT4G24580.1  
At4g24590	chr4:012696651	0.0	W/12696651-12696905,12697022-12697112,12697217-12697377,12697449-12697476,12697734-12697842,12697955-12698036	AT4G24590.1  CDS  gene_syn F22K18.210, F22K18_210  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49710.3); Has 64 Blast hits to 64 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 2; Plants - 47; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT4G24590.1p  transcript_id AT4G24590.1  protein_id AT4G24590.1p  transcript_id AT4G24590.1  
At4g24600	chr4:012699986	0.0	W/12699986-12700001,12700120-12700478	AT4G24600.1  CDS  gene_syn F22K18.200, F22K18_200  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G24600.1p  transcript_id AT4G24600.1  protein_id AT4G24600.1p  transcript_id AT4G24600.1  
At4g24610	chr4:012707504	0.0	C/12707504-12707899,12706907-12707079,12706756-12706827,12706475-12706609,12706173-12706291,12705787-12706089,12705478-12705565,12705270-12705375,12705085-12705234,12704472-12704635,12704263-12704383,12703681-12703905,12703399-12703589,12702742-12702909,12702565-12702670,12702285-12702422,12701974-12702135,12701681-12701881,12701223-12701417,12701069-12701140,12700837-12700989	AT4G24610.1  CDS  gene_syn F22K18.190, F22K18_190  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65440.1); Has 766 Blast hits to 214 proteins in 55 species: Archae - 0; Bacteria - 9; Metazoa - 85; Fungi - 75; Plants - 51; Viruses - 0; Other Eukaryotes - 546 (source: NCBI BLink).  protein_id AT4G24610.1p  transcript_id AT4G24610.1  protein_id AT4G24610.1p  transcript_id AT4G24610.1  
At4g24620	chr4:012712092	0.0	C/12712092-12712610,12711759-12711881,12711463-12711561,12711296-12711379,12710869-12711012,12710730-12710795,12710507-12710575,12710306-12710413,12709992-12710044,12709762-12709900,12709519-12709675,12709349-12709427,12709193-12709259,12708972-12709106	AT4G24620.1  CDS  gene_syn F22K18.180, F22K18_180, PGI, PGI1, PHOSPHO-GLC ISOMERASE, PHOSPHOGLUCOSE ISOMERASE 1, PHOSPHOGLUCOSE ISOMERASE PRECURSOR  gene PGI1  function The PGI1 gene encodes the plastid phospho-glucose (Glc) isomerase. While pgi1-1 mutant has a deficiency in leaf starch synthesis, it accumulates starch in root cap cells. Flowering time of the pgi1-1 mutant is significantly delayed under short-day conditions.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component plastid|GO:0009536|10806248|ISS  go_process starch metabolic process|GO:0005982|10806248|IMP  go_process positive regulation of flower development|GO:0009911|10806248|IMP  go_function glucose-6-phosphate isomerase activity|GO:0004347|10806248|ISS  product PGI1 (PHOSPHOGLUCOSE ISOMERASE 1); glucose-6-phosphate isomerase  note PHOSPHOGLUCOSE ISOMERASE 1 (PGI1); FUNCTIONS IN: glucose-6-phosphate isomerase activity; INVOLVED IN: positive regulation of flower development, starch metabolic process; LOCATED IN: cytosol, chloroplast stroma, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglucose isomerase, conserved site (InterPro:IPR018189), Phosphoglucose isomerase (PGI) (InterPro:IPR001672); BEST Arabidopsis thaliana protein match is: glucose-6-phosphate isomerase, cytosolic (PGIC) (TAIR:AT5G42740.1); Has 7316 Blast hits to 7314 proteins in 1971 species: Archae - 34; Bacteria - 3713; Metazoa - 369; Fungi - 112; Plants - 747; Viruses - 0; Other Eukaryotes - 2341 (source: NCBI BLink).  protein_id AT4G24620.1p  transcript_id AT4G24620.1  protein_id AT4G24620.1p  transcript_id AT4G24620.1  
At4g24620	chr4:012712092	0.0	C/12712092-12712610,12711759-12711881,12711463-12711561,12711296-12711379,12710869-12711012,12710730-12710795,12710507-12710575,12710306-12710413,12709992-12710044,12709762-12709900,12709519-12709675,12709349-12709427,12709193-12709259,12709097-12709102	AT4G24620.2  CDS  gene_syn F22K18.180, F22K18_180, PGI, PGI1, PHOSPHO-GLC ISOMERASE, PHOSPHOGLUCOSE ISOMERASE 1, PHOSPHOGLUCOSE ISOMERASE PRECURSOR  gene PGI1  function The PGI1 gene encodes the plastid phospho-glucose (Glc) isomerase. While pgi1-1 mutant has a deficiency in leaf starch synthesis, it accumulates starch in root cap cells. Flowering time of the pgi1-1 mutant is significantly delayed under short-day conditions.  go_component chloroplast|GO:0009507|18431481|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component plastid|GO:0009536|10806248|ISS  go_process starch metabolic process|GO:0005982|10806248|IMP  go_process positive regulation of flower development|GO:0009911|10806248|IMP  go_function glucose-6-phosphate isomerase activity|GO:0004347|10806248|ISS  product PGI1 (PHOSPHOGLUCOSE ISOMERASE 1); glucose-6-phosphate isomerase  note PHOSPHOGLUCOSE ISOMERASE 1 (PGI1); FUNCTIONS IN: glucose-6-phosphate isomerase activity; INVOLVED IN: positive regulation of flower development, starch metabolic process; LOCATED IN: cytosol, chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglucose isomerase, conserved site (InterPro:IPR018189), Phosphoglucose isomerase (PGI) (InterPro:IPR001672); BEST Arabidopsis thaliana protein match is: glucose-6-phosphate isomerase, cytosolic (PGIC) (TAIR:AT5G42740.1); Has 7302 Blast hits to 7300 proteins in 1961 species: Archae - 34; Bacteria - 3713; Metazoa - 356; Fungi - 112; Plants - 747; Viruses - 0; Other Eukaryotes - 2340 (source: NCBI BLink).  protein_id AT4G24620.2p  transcript_id AT4G24620.2  protein_id AT4G24620.2p  transcript_id AT4G24620.2  
At4g24630	chr4:012714919	0.0	W/12714919-12714957,12715351-12715536,12715792-12716091,12716281-12716514,12716647-12717111	AT4G24630.1  CDS  gene_syn F22K18.170, F22K18_170  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process multicellular organismal development|GO:0007275||IEA  go_function receptor activity|GO:0004872||IEA  go_function zinc ion binding|GO:0008270||IEA  product receptor/ zinc ion binding  note receptor/ zinc ion binding; FUNCTIONS IN: receptor activity, zinc ion binding; INVOLVED IN: multicellular organismal development; LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594), Plexin-like fold (InterPro:IPR016201); BEST Arabidopsis thaliana protein match is: zinc finger (DHHC type) family protein (TAIR:AT5G50020.1); Has 3990 Blast hits to 3983 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 1956; Fungi - 539; Plants - 407; Viruses - 0; Other Eukaryotes - 1088 (source: NCBI BLink).  protein_id AT4G24630.1p  transcript_id AT4G24630.1  protein_id AT4G24630.1p  transcript_id AT4G24630.1  
At4g24640	chr4:012717851	0.0	W/12717851-12718036,12718427-12718804	AT4G24640.1  CDS  gene_syn APPB1, F22K18.160, F22K18_160  gene APPB1  function Encodes AppB protein (AppB1).  go_component vacuole|GO:0005773|15539469|IDA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product APPB1; enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor  note APPB1; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT5G50030.1); Has 28 Blast hits to 28 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G24640.1p  transcript_id AT4G24640.1  protein_id AT4G24640.1p  transcript_id AT4G24640.1  
At4g24644	chr4:012719607	0.0	W/12719607-12719771	AT4G24644.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G24644.1p  transcript_id AT4G24644.1  protein_id AT4G24644.1p  transcript_id AT4G24644.1  
At4g24650	chr4:012720466	0.0	W/12720466-12721422	AT4G24650.1  CDS  gene_syn ATIPT4, F22K18.150, F22K18_150  gene ATIPT4  function AB061402 Arabidopsis thaliana AtIPT4 mRNA for cytokinin synthase, complete cds  go_component cellular_component|GO:0005575||ND  go_process cytokinin biosynthetic process|GO:0009691|11479373|IMP  go_process cytokinin biosynthetic process|GO:0009691|17062755|IGI  go_function adenylate dimethylallyltransferase activity|GO:0009824|11479373|ISS  product ATIPT4; adenylate dimethylallyltransferase  note ATIPT4; FUNCTIONS IN: adenylate dimethylallyltransferase activity; INVOLVED IN: cytokinin biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: endosperm; CONTAINS InterPro DOMAIN/s: tRNA isopentenyltransferase (InterPro:IPR002627); BEST Arabidopsis thaliana protein match is: ATIPT1 (isopentenyltransferase 1); adenylate dimethylallyltransferase (TAIR:AT1G68460.1); Has 4982 Blast hits to 4879 proteins in 1422 species: Archae - 0; Bacteria - 2637; Metazoa - 157; Fungi - 105; Plants - 183; Viruses - 0; Other Eukaryotes - 1900 (source: NCBI BLink).  protein_id AT4G24650.1p  transcript_id AT4G24650.1  protein_id AT4G24650.1p  transcript_id AT4G24650.1  
At4g24652	chr4:012722395	0.0	C/12722395-12722952	AT4G24652.1  pseudogenic_transcript  pseudo  function Pseudogene of AT4G20330; transcription initiation factor-related  
At4g24660	chr4:012724851	0.0	C/12724851-12725513	AT4G24660.1  CDS  gene_syn ATHB22, F22K18.140, F22K18_140, HOMEOBOX PROTEIN 22, MATERNAL EFFECT EMBRYO ARREST 68, MEE68  gene ATHB22  go_component nucleus|GO:0005634||IEA  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function DNA binding|GO:0003677|11289511|ISS  go_function transcription factor activity|GO:0003700||ISS  product ATHB22 (HOMEOBOX PROTEIN 22); DNA binding / transcription factor  note HOMEOBOX PROTEIN 22 (ATHB22); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein Cys/His-rich dimerisation region (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: HB25 (HOMEOBOX PROTEIN 25); DNA binding / sequence-specific DNA binding / transcription factor/ transcription regulator (TAIR:AT5G65410.1); Has 263 Blast hits to 255 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 260; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G24660.1p  transcript_id AT4G24660.1  protein_id AT4G24660.1p  transcript_id AT4G24660.1  
At4g24670	chr4:012730447	0.0	C/12730447-12730694,12729016-12729319,12728596-12728876,12728220-12728512,12727940-12728136	AT4G24670.1  CDS  gene_syn F22K18.130, F22K18_130, TAR2, TRYPTOPHAN AMINOTRANSFERASE RELATED 2  gene TAR2  function Encodes a protein with similarity to the TAA1 trytophan aminotransferase involved in IAA biosynthesis. Double mutant analyses suggest that this protein is involved in regulating many aspects of plant growth and development from embryogenesis to flower formation and plays a role in ethylene-mediated signaling.  go_component endomembrane system|GO:0012505||IEA  go_process indoleacetic acid biosynthetic process|GO:0009684|18394997|IGI  go_process response to ethylene stimulus|GO:0009723|18394997|IGI  go_process embryonic development ending in seed dormancy|GO:0009793|18394997|IGI  go_process flower development|GO:0009908|18394997|IGI  go_process positive gravitropism|GO:0009958|18394997|IGI  go_process maintenance of root meristem identity|GO:0010078|18394997|IGI  go_process phloem or xylem histogenesis|GO:0010087|18394997|IGI  go_process cotyledon vascular tissue pattern formation|GO:0010588|18394997|IGI  go_process shoot system development|GO:0022621|18394997|IGI  go_process gynoecium development|GO:0048467|18394997|IGI  go_process cotyledon development|GO:0048825|18394997|IGI  go_process primary root development|GO:0080022|18394997|IGI  go_function carbon-sulfur lyase activity|GO:0016846||ISS  go_function L-tryptophan:2-oxoglutarate aminotransferase activity|GO:0050362|18394997|ISS  go_function L-tryptophan:pyruvate aminotransferase activity|GO:0080097|18394997|ISS  product TAR2 (TRYPTOPHAN AMINOTRANSFERASE RELATED 2); L-tryptophan:2-oxoglutarate aminotransferase/ L-tryptophan:pyruvate aminotransferase/ carbon-sulfur lyase  note TRYPTOPHAN AMINOTRANSFERASE RELATED 2 (TAR2); FUNCTIONS IN: L-tryptophan:2-oxoglutarate aminotransferase activity, carbon-sulfur lyase activity, L-tryptophan:pyruvate aminotransferase activity; INVOLVED IN: in 12 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Allinase, C-terminal (InterPro:IPR006948); BEST Arabidopsis thaliana protein match is: TAA1 (TRYPTOPHAN AMINOTRANSFERASE OF ARABIDOPSIS 1); L-alanine:2-oxoglutarate aminotransferase/ L-glutamine:2-oxoglutarate aminotransferase/ L-leucine:2-oxoglutarate aminotransferase/ L-methionine:2-oxoglutarate aminotransferase/ L-phenylalanine:2-oxoglutarate aminotransferase/ L-phenylalanine:pyruvate aminotransferase/ L-tryptophan:2-oxoglutarate aminotransferase/ L-tryptophan:pyruvate aminotransferase/ L-tyrosine:2-oxoglutarate aminotransferase/ L-tyrosine:pyruvate aminotransferase/ carbon-sulfur lyase/ pyridoxal phosphate binding (TAIR:AT1G70560.1); Has 206 Blast hits to 206 proteins in 52 species: Archae - 11; Bacteria - 53; Metazoa - 0; Fungi - 2; Plants - 119; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT4G24670.1p  transcript_id AT4G24670.1  protein_id AT4G24670.1p  transcript_id AT4G24670.1  
At4g24670	chr4:012730447	0.0	C/12730447-12730694,12729016-12729319,12728596-12728876,12728220-12728512,12727940-12728136	AT4G24670.2  CDS  gene_syn F22K18.130, F22K18_130, TAR2, TRYPTOPHAN AMINOTRANSFERASE RELATED 2  gene TAR2  function Encodes a protein with similarity to the TAA1 trytophan aminotransferase involved in IAA biosynthesis. Double mutant analyses suggest that this protein is involved in regulating many aspects of plant growth and development from embryogenesis to flower formation and plays a role in ethylene-mediated signaling.  go_component endomembrane system|GO:0012505||IEA  go_process indoleacetic acid biosynthetic process|GO:0009684|18394997|IGI  go_process response to ethylene stimulus|GO:0009723|18394997|IGI  go_process embryonic development ending in seed dormancy|GO:0009793|18394997|IGI  go_process flower development|GO:0009908|18394997|IGI  go_process positive gravitropism|GO:0009958|18394997|IGI  go_process maintenance of root meristem identity|GO:0010078|18394997|IGI  go_process phloem or xylem histogenesis|GO:0010087|18394997|IGI  go_process cotyledon vascular tissue pattern formation|GO:0010588|18394997|IGI  go_process shoot system development|GO:0022621|18394997|IGI  go_process gynoecium development|GO:0048467|18394997|IGI  go_process cotyledon development|GO:0048825|18394997|IGI  go_process primary root development|GO:0080022|18394997|IGI  go_function carbon-sulfur lyase activity|GO:0016846||ISS  go_function L-tryptophan:2-oxoglutarate aminotransferase activity|GO:0050362|18394997|ISS  go_function L-tryptophan:pyruvate aminotransferase activity|GO:0080097|18394997|ISS  product TAR2 (TRYPTOPHAN AMINOTRANSFERASE RELATED 2); L-tryptophan:2-oxoglutarate aminotransferase/ L-tryptophan:pyruvate aminotransferase/ carbon-sulfur lyase  note TRYPTOPHAN AMINOTRANSFERASE RELATED 2 (TAR2); FUNCTIONS IN: L-tryptophan:2-oxoglutarate aminotransferase activity, carbon-sulfur lyase activity, L-tryptophan:pyruvate aminotransferase activity; INVOLVED IN: in 12 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Allinase, C-terminal (InterPro:IPR006948); BEST Arabidopsis thaliana protein match is: TAA1 (TRYPTOPHAN AMINOTRANSFERASE OF ARABIDOPSIS 1); L-alanine:2-oxoglutarate aminotransferase/ L-glutamine:2-oxoglutarate aminotransferase/ L-leucine:2-oxoglutarate aminotransferase/ L-methionine:2-oxoglutarate aminotransferase/ L-phenylalanine:2-oxoglutarate aminotransferase/ L-phenylalanine:pyruvate aminotransferase/ L-tryptophan:2-oxoglutarate aminotransferase/ L-tryptophan:pyruvate aminotransferase/ L-tyrosine:2-oxoglutarate aminotransferase/ L-tyrosine:pyruvate aminotransferase/ carbon-sulfur lyase/ pyridoxal phosphate binding (TAIR:AT1G70560.1); Has 206 Blast hits to 206 proteins in 52 species: Archae - 11; Bacteria - 53; Metazoa - 0; Fungi - 2; Plants - 119; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT4G24670.2p  transcript_id AT4G24670.2  protein_id AT4G24670.2p  transcript_id AT4G24670.2  
At4g24680	chr4:012733425	0.0	W/12733425-12733453,12733952-12734035,12734119-12734163,12734257-12734626,12735165-12735267,12735671-12735787,12736012-12737089,12737171-12737399,12737509-12739737	AT4G24680.1  CDS  gene_syn F22K18.120, F22K18_120  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: BAT2, N-terminal (InterPro:IPR009738); Has 6700 Blast hits to 3976 proteins in 401 species: Archae - 2; Bacteria - 590; Metazoa - 2482; Fungi - 634; Plants - 203; Viruses - 19; Other Eukaryotes - 2770 (source: NCBI BLink).  protein_id AT4G24680.1p  transcript_id AT4G24680.1  protein_id AT4G24680.1p  transcript_id AT4G24680.1  
At4g24690	chr4:012741191	0.0	W/12741191-12741223,12741582-12742471,12742561-12742684,12742788-12743045,12743223-12743372,12743465-12744022,12744101-12744202	AT4G24690.1  CDS  gene_syn F22K18.110, F22K18_110  go_function zinc ion binding|GO:0008270||IEA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process biological_process|GO:0008150||ND  product ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein  note ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Zinc finger, ZZ-type (InterPro:IPR000433); Has 492 Blast hits to 472 proteins in 101 species: Archae - 0; Bacteria - 6; Metazoa - 329; Fungi - 68; Plants - 57; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT4G24690.1p  transcript_id AT4G24690.1  protein_id AT4G24690.1p  transcript_id AT4G24690.1  
At4g24700	chr4:012744807	0.0	C/12744807-12745238	AT4G24700.1  CDS  gene_syn F22K18.100, F22K18_100  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G24700.1p  transcript_id AT4G24700.1  protein_id AT4G24700.1p  transcript_id AT4G24700.1  
At4g24710	chr4:012748812	0.0	C/12748812-12748995,12748666-12748729,12748457-12748563,12748266-12748333,12748077-12748180,12747879-12747983,12747541-12747630,12747362-12747437,12746831-12746900,12746682-12746752,12746492-12746582,12746245-12746372,12746009-12746137,12745752-12745892	AT4G24710.1  CDS  gene_syn F22K18.90, F22K18_90  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATPase activity|GO:0016887||ISS  product ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding  note ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: shoot apex, embryo, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Chaperonin clpA/B (InterPro:IPR001270); BEST Arabidopsis thaliana protein match is: CDC48B; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (TAIR:AT2G03670.1); Has 15913 Blast hits to 14713 proteins in 1632 species: Archae - 834; Bacteria - 4443; Metazoa - 3511; Fungi - 2069; Plants - 1202; Viruses - 9; Other Eukaryotes - 3845 (source: NCBI BLink).  protein_id AT4G24710.1p  transcript_id AT4G24710.1  protein_id AT4G24710.1p  transcript_id AT4G24710.1  
At4g24730	chr4:012752696	0.0	C/12752696-12753631	AT4G24730.2  CDS  gene_syn F22K18.70, F22K18_70  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product calcineurin-like phosphoesterase family protein  note calcineurin-like phosphoesterase family protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); Has 197 Blast hits to 196 proteins in 61 species: Archae - 0; Bacteria - 73; Metazoa - 56; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT4G24730.2p  transcript_id AT4G24730.2  protein_id AT4G24730.2p  transcript_id AT4G24730.2  
At4g24730	chr4:012752696	0.0	C/12752696-12753631	AT4G24730.3  CDS  gene_syn F22K18.70, F22K18_70  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product calcineurin-like phosphoesterase family protein  note calcineurin-like phosphoesterase family protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); Has 197 Blast hits to 196 proteins in 61 species: Archae - 0; Bacteria - 73; Metazoa - 56; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT4G24730.3p  transcript_id AT4G24730.3  protein_id AT4G24730.3p  transcript_id AT4G24730.3  
At4g24730	chr4:012752788	0.0	C/12752788-12753631,12749879-12750366	AT4G24730.1  CDS  gene_syn F22K18.70, F22K18_70  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product calcineurin-like phosphoesterase family protein  note calcineurin-like phosphoesterase family protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: WR3 (WOUND-RESPONSIVE 3); nitrate transmembrane transporter (TAIR:AT5G50200.3); Has 243 Blast hits to 242 proteins in 66 species: Archae - 0; Bacteria - 73; Metazoa - 54; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT4G24730.1p  transcript_id AT4G24730.1  protein_id AT4G24730.1p  transcript_id AT4G24730.1  
At4g24740	chr4:012756540	0.0	C/12756540-12756549,12756303-12756456,12756145-12756193,12755932-12756046,12755691-12755782,12755455-12755605,12755311-12755375,12755142-12755239,12754946-12755048,12754729-12754866	AT4G24740.2  CDS  gene_syn AFC2, AME1, ARABIDOPSIS FUS3-COMPLEMENTING GENE 2, CLK/STY (LAMMER-TYPE) PROTEIN KINASE, F22K18.60, F22K18_60  gene AFC2  function a LAMMER-type protein kinase that co-precipitates with serine/arginine-rich (SR) proteins in vitro, interaction modulated by phosphorylation of the proteins.  go_component cellular_component|GO:0005575||ND  go_process mRNA processing|GO:0006397|10593939|IDA  go_function protein kinase activity|GO:0004672|10593939|IDA  go_function kinase activity|GO:0016301||ISS  product AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2); kinase/ protein kinase  note ARABIDOPSIS FUS3-COMPLEMENTING GENE 2 (AFC2); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: mRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT3G53570.4); Has 55909 Blast hits to 54973 proteins in 1303 species: Archae - 23; Bacteria - 2488; Metazoa - 26583; Fungi - 7156; Plants - 7001; Viruses - 235; Other Eukaryotes - 12423 (source: NCBI BLink).  protein_id AT4G24740.2p  transcript_id AT4G24740.2  protein_id AT4G24740.2p  transcript_id AT4G24740.2  
At4g24740	chr4:012757552	0.0	C/12757552-12757653,12756745-12756934,12756540-12756566,12756303-12756456,12756145-12756193,12755932-12756046,12755691-12755782,12755455-12755605,12755311-12755375,12755142-12755239,12754946-12755048,12754729-12754866	AT4G24740.1  CDS  gene_syn AFC2, AME1, ARABIDOPSIS FUS3-COMPLEMENTING GENE 2, CLK/STY (LAMMER-TYPE) PROTEIN KINASE, F22K18.60, F22K18_60  gene AFC2  function a LAMMER-type protein kinase that co-precipitates with serine/arginine-rich (SR) proteins in vitro, interaction modulated by phosphorylation of the proteins.  go_component cellular_component|GO:0005575||ND  go_process mRNA processing|GO:0006397|10593939|IDA  go_function protein kinase activity|GO:0004672|10593939|IDA  go_function kinase activity|GO:0016301||ISS  product AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2); kinase/ protein kinase  note ARABIDOPSIS FUS3-COMPLEMENTING GENE 2 (AFC2); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: mRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT3G53570.4); Has 59552 Blast hits to 58573 proteins in 1440 species: Archae - 31; Bacteria - 3475; Metazoa - 27770; Fungi - 7405; Plants - 7528; Viruses - 270; Other Eukaryotes - 13073 (source: NCBI BLink).  protein_id AT4G24740.1p  transcript_id AT4G24740.1  protein_id AT4G24740.1p  transcript_id AT4G24740.1  
At4g24750	chr4:012760600	0.0	C/12760600-12760749,12760397-12760492,12760177-12760284,12759836-12759932,12759579-12759618,12759422-12759496,12759032-12759119,12758851-12758918,12758594-12758666,12758422-12758505	AT4G24750.1  CDS  gene_syn F22K18.50, F22K18_50  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: rhodanese-like domain-containing protein (TAIR:AT3G08920.1); Has 222 Blast hits to 222 proteins in 59 species: Archae - 8; Bacteria - 82; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT4G24750.1p  transcript_id AT4G24750.1  protein_id AT4G24750.1p  transcript_id AT4G24750.1  
At4g24760	chr4:012763263	0.0	C/12763263-12763564,12762575-12762611,12762238-12762474,12762102-12762149,12761482-12761955	AT4G24760.1  CDS  gene_syn F22K18.40, F22K18_40  product unknown protein  note unknown protein; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G14390.1); Has 2872 Blast hits to 2868 proteins in 500 species: Archae - 2; Bacteria - 744; Metazoa - 536; Fungi - 127; Plants - 153; Viruses - 6; Other Eukaryotes - 1304 (source: NCBI BLink).  protein_id AT4G24760.1p  transcript_id AT4G24760.1  protein_id AT4G24760.1p  transcript_id AT4G24760.1  
At4g24770	chr4:012767413	0.0	C/12767413-12767952,12766995-12767096,12766386-12766667,12766223-12766288	AT4G24770.1  CDS  gene_syn 31-KDA RNA BINDING PROTEIN, ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, ATRBP31, ATRBP33, CP31, F6I7.11, RBP31, STEP1  gene RBP31  function Encodes a chloroplast RNA-binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast|GO:0009507|7894017|IDA  go_component chloroplast|GO:0009507|7972518|IDA  go_process RNA processing|GO:0006396|7972518|TAS  go_process innate immune response|GO:0045087|17450127|IDA  go_function RNA binding|GO:0003723|7894017|TAS  go_function RNA binding|GO:0003723|7972518|ISS  go_function RNA binding|GO:0003723||ISS  go_function poly(U) binding|GO:0008266|17511964|IDA  product RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding  note 31-KDA RNA BINDING PROTEIN (RBP31); FUNCTIONS IN: RNA binding, poly(U) binding; INVOLVED IN: innate immune response, RNA processing; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative (TAIR:AT5G50250.1); Has 30959 Blast hits to 17715 proteins in 652 species: Archae - 20; Bacteria - 2297; Metazoa - 16817; Fungi - 3597; Plants - 4513; Viruses - 4; Other Eukaryotes - 3711 (source: NCBI BLink).  protein_id AT4G24770.1p  transcript_id AT4G24770.1  protein_id AT4G24770.1p  transcript_id AT4G24770.1  
At4g24780	chr4:012772112	0.0	C/12772112-12772227,12771083-12771832,12770631-12770991	AT4G24780.1  CDS  gene_syn F6I7.12  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function lyase activity|GO:0016829||ISS  go_function pectate lyase activity|GO:0030570||ISS  product pectate lyase family protein  note pectate lyase family protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectate lyase family protein (TAIR:AT5G63180.1); Has 863 Blast hits to 860 proteins in 162 species: Archae - 0; Bacteria - 350; Metazoa - 0; Fungi - 105; Plants - 397; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT4G24780.1p  transcript_id AT4G24780.1  protein_id AT4G24780.1p  transcript_id AT4G24780.1  
At4g24790	chr4:012778222	0.0	W/12778222-12779646,12779733-12779952,12780043-12780219,12780319-12780513,12780601-12781027,12781121-12781172,12781268-12781345	AT4G24790.1  CDS  gene_syn F6I7.13  go_component DNA polymerase III complex|GO:0009360||IEA  go_process DNA replication|GO:0006260||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed DNA polymerase activity|GO:0003887||IEA  go_function ATP binding|GO:0005524||IEA  product ATP binding / DNA binding / DNA-directed DNA polymerase  note ATP binding / DNA binding / DNA-directed DNA polymerase; FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity, ATP binding; INVOLVED IN: DNA replication; LOCATED IN: DNA polymerase III complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III clamp loader subunit, C-terminal (InterPro:IPR008921), DNA polymerase III, subunits gamma and tau (InterPro:IPR012763); BEST Arabidopsis thaliana protein match is: DNA polymerase-related (TAIR:AT1G14460.1); Has 9086 Blast hits to 9067 proteins in 1538 species: Archae - 255; Bacteria - 4109; Metazoa - 318; Fungi - 326; Plants - 151; Viruses - 35; Other Eukaryotes - 3892 (source: NCBI BLink).  protein_id AT4G24790.1p  transcript_id AT4G24790.1  protein_id AT4G24790.1p  transcript_id AT4G24790.1  
At4g24790	chr4:012778222	0.0	W/12778222-12779646,12779733-12779952,12780043-12780219,12780319-12780513,12780601-12781027,12781121-12781172,12781268-12781345	AT4G24790.2  CDS  gene_syn F6I7.13  go_component DNA polymerase III complex|GO:0009360||IEA  go_process DNA replication|GO:0006260||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed DNA polymerase activity|GO:0003887||IEA  go_function ATP binding|GO:0005524||IEA  product ATP binding / DNA binding / DNA-directed DNA polymerase  note ATP binding / DNA binding / DNA-directed DNA polymerase; FUNCTIONS IN: DNA-directed DNA polymerase activity, DNA binding, ATP binding; INVOLVED IN: DNA replication; LOCATED IN: DNA polymerase III complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III clamp loader subunit, C-terminal (InterPro:IPR008921), DNA polymerase III, subunits gamma and tau (InterPro:IPR012763); BEST Arabidopsis thaliana protein match is: DNA polymerase-related (TAIR:AT1G14460.1); Has 9086 Blast hits to 9067 proteins in 1538 species: Archae - 255; Bacteria - 4109; Metazoa - 318; Fungi - 326; Plants - 151; Viruses - 35; Other Eukaryotes - 3892 (source: NCBI BLink).  protein_id AT4G24790.2p  transcript_id AT4G24790.2  protein_id AT4G24790.2p  transcript_id AT4G24790.2  
At4g24800	chr4:012782463	0.0	W/12782463-12782667,12782824-12782918,12783094-12784902	AT4G24800.1  CDS  gene_syn F6I7.10, F6I7_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MA3 domain-containing protein  note MA3 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891); BEST Arabidopsis thaliana protein match is: MA3 domain-containing protein (TAIR:AT5G63190.2); Has 1429 Blast hits to 596 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 943; Fungi - 14; Plants - 365; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT4G24800.1p  transcript_id AT4G24800.1  protein_id AT4G24800.1p  transcript_id AT4G24800.1  
At4g24800	chr4:012782463	0.0	W/12782463-12782667,12782824-12782918,12783094-12784902	AT4G24800.2  CDS  gene_syn F6I7.10, F6I7_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MA3 domain-containing protein  note MA3 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891); BEST Arabidopsis thaliana protein match is: MA3 domain-containing protein (TAIR:AT5G63190.2); Has 1429 Blast hits to 596 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 943; Fungi - 14; Plants - 365; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT4G24800.2p  transcript_id AT4G24800.2  protein_id AT4G24800.2p  transcript_id AT4G24800.2  
At4g24805	chr4:012785315	0.0	W/12785315-12786058	AT4G24805.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function methyltransferase activity|GO:0008168||IEA  product methyltransferase  note methyltransferase; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: methyltransferase (TAIR:AT1G24480.1); Has 180 Blast hits to 180 proteins in 30 species: Archae - 4; Bacteria - 27; Metazoa - 0; Fungi - 2; Plants - 109; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT4G24805.1p  transcript_id AT4G24805.1  protein_id AT4G24805.1p  transcript_id AT4G24805.1  
At4g24810	chr4:012789239	0.0	C/12789239-12789352,12788814-12789008,12788625-12788672,12788417-12788545,12788203-12788327,12787901-12788011,12787677-12787785,12787436-12787554,12787164-12787317,12786927-12787074,12786791-12786855	AT4G24810.1  CDS  gene_syn F6I7.20, F6I7_20  function similar to ABC1 family protein, contains InterPro domain ABC1 protein (InterPro:IPR004147)  go_component chloroplast|GO:0009507|18431481|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  product ABC1 family protein  note ABC1 family protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase, core (InterPro:IPR000719), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATP binding / protein kinase (TAIR:AT5G50330.1); Has 6821 Blast hits to 6811 proteins in 1102 species: Archae - 67; Bacteria - 2624; Metazoa - 351; Fungi - 314; Plants - 343; Viruses - 14; Other Eukaryotes - 3108 (source: NCBI BLink).  protein_id AT4G24810.1p  transcript_id AT4G24810.1  protein_id AT4G24810.1p  transcript_id AT4G24810.1  
At4g24810	chr4:012789485	0.0	C/12789485-12789598,12789239-12789367,12788814-12789008,12788625-12788672,12788417-12788545,12788203-12788327,12787901-12788011,12787677-12787785,12787436-12787554,12787164-12787317,12786927-12787074,12786791-12786855	AT4G24810.2  CDS  gene_syn F6I7.20, F6I7_20  function similar to ABC1 family protein, contains InterPro domain ABC1 protein (InterPro:IPR004147)  go_component chloroplast|GO:0009507|18431481|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  product ABC1 family protein  note ABC1 family protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase, core (InterPro:IPR000719), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATP binding / protein kinase (TAIR:AT5G50330.1); Has 6822 Blast hits to 6812 proteins in 1102 species: Archae - 67; Bacteria - 2624; Metazoa - 351; Fungi - 314; Plants - 343; Viruses - 14; Other Eukaryotes - 3109 (source: NCBI BLink).  protein_id AT4G24810.2p  transcript_id AT4G24810.2  protein_id AT4G24810.2p  transcript_id AT4G24810.2  
At4g24820	chr4:012792461	0.0	C/12792461-12792599,12792248-12792362,12791814-12791904,12791590-12791735,12791280-12791499,12791035-12791143,12790767-12790935,12790471-12790645	AT4G24820.1  CDS  gene_syn F6I7.30, F6I7_30  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component nucleus|GO:0005634|11742986|TAS  go_component proteasome regulatory particle, lid subcomplex|GO:0008541||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_process protein catabolic process|GO:0030163|11742986|TAS  go_function molecular_function|GO:0003674||ND  product 26S proteasome regulatory subunit, putative (RPN7)  note 26S proteasome regulatory subunit, putative (RPN7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus, plasma membrane, proteasome regulatory particle, lid subcomplex, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component region PCI (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: FUS6 (FUSCA 6) (TAIR:AT3G61140.1); Has 607 Blast hits to 584 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 253; Fungi - 168; Plants - 98; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT4G24820.1p  transcript_id AT4G24820.1  protein_id AT4G24820.1p  transcript_id AT4G24820.1  
At4g24820	chr4:012792461	0.0	C/12792461-12792599,12792248-12792362,12791814-12791904,12791590-12791735,12791280-12791499,12791035-12791143,12790767-12790935,12790471-12790645	AT4G24820.2  CDS  gene_syn F6I7.30, F6I7_30  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component nucleus|GO:0005634|11742986|TAS  go_component proteasome regulatory particle, lid subcomplex|GO:0008541||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_process protein catabolic process|GO:0030163|11742986|TAS  go_function molecular_function|GO:0003674||ND  product 26S proteasome regulatory subunit, putative (RPN7)  note 26S proteasome regulatory subunit, putative (RPN7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus, plasma membrane, proteasome regulatory particle, lid subcomplex, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component region PCI (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: FUS6 (FUSCA 6) (TAIR:AT3G61140.1); Has 607 Blast hits to 584 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 253; Fungi - 168; Plants - 98; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT4G24820.2p  transcript_id AT4G24820.2  protein_id AT4G24820.2p  transcript_id AT4G24820.2  
At4g24830	chr4:012795785	0.0	C/12795785-12795857,12795534-12795589,12795365-12795446,12795108-12795246,12794940-12794988,12794650-12794832,12794458-12794532,12794183-12794368,12793966-12794054,12793085-12793637	AT4G24830.1  CDS  gene_syn F6I7.40, F6I7_40  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process arginine biosynthetic process|GO:0006526||IEA  go_function argininosuccinate synthase activity|GO:0004055||IEA  go_function ATP binding|GO:0005524||IEA  go_process arginine biosynthetic process|GO:0006526||ISS  go_function argininosuccinate synthase activity|GO:0004055||ISS  go_function ATP binding|GO:0005524||ISS  product arginosuccinate synthase family  note arginosuccinate synthase family; FUNCTIONS IN: argininosuccinate synthase activity, ATP binding; INVOLVED IN: arginine biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Argininosuccinate synthase, conserved site (InterPro:IPR018223), Argininosuccinate synthase (InterPro:IPR001518); Has 6083 Blast hits to 6076 proteins in 1351 species: Archae - 136; Bacteria - 2563; Metazoa - 143; Fungi - 94; Plants - 33; Viruses - 0; Other Eukaryotes - 3114 (source: NCBI BLink).  protein_id AT4G24830.1p  transcript_id AT4G24830.1  protein_id AT4G24830.1p  transcript_id AT4G24830.1  
At4g24830	chr4:012795785	0.0	C/12795785-12795857,12795534-12795589,12795365-12795446,12795108-12795246,12794940-12794988,12794650-12794832,12794458-12794532,12794183-12794368,12793966-12794054,12793477-12793637,12793085-12793344	AT4G24830.2  CDS  gene_syn F6I7.40, F6I7_40  go_component chloroplast|GO:0009507|18431481|IDA  go_process arginine biosynthetic process|GO:0006526||IEA  go_function argininosuccinate synthase activity|GO:0004055||IEA  go_function ATP binding|GO:0005524||IEA  go_process arginine biosynthetic process|GO:0006526||ISS  go_function argininosuccinate synthase activity|GO:0004055||ISS  go_function ATP binding|GO:0005524||ISS  product arginosuccinate synthase family  note arginosuccinate synthase family; FUNCTIONS IN: argininosuccinate synthase activity, ATP binding; INVOLVED IN: arginine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Argininosuccinate synthase, conserved site (InterPro:IPR018223), Argininosuccinate synthase (InterPro:IPR001518); Has 6047 Blast hits to 6044 proteins in 1348 species: Archae - 136; Bacteria - 2565; Metazoa - 142; Fungi - 94; Plants - 30; Viruses - 0; Other Eukaryotes - 3080 (source: NCBI BLink).  protein_id AT4G24830.2p  transcript_id AT4G24830.2  protein_id AT4G24830.2p  transcript_id AT4G24830.2  
At4g24840	chr4:012800453	0.0	C/12800453-12800926,12799918-12800118,12799198-12799534,12798840-12799001,12798579-12798678,12798248-12798457,12798063-12798168,12797607-12797807,12797313-12797417,12797087-12797212,12796738-12796872,12796525-12796638	AT4G24840.1  CDS  gene_syn F6I7.50, F6I7_50  go_component vacuole|GO:0005773|15539469|IDA  go_process Golgi organization|GO:0007030||IEA  go_process protein transport|GO:0015031||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport, Golgi organization; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: COG complex component, COG2 (InterPro:IPR009316); Has 214 Blast hits to 204 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 56; Plants - 22; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT4G24840.1p  transcript_id AT4G24840.1  protein_id AT4G24840.1p  transcript_id AT4G24840.1  
At4g24860	chr4:012808071	0.0	C/12808071-12808190,12807834-12807975,12807624-12807718,12807440-12807526,12807158-12807274,12806794-12807015,12806560-12806717,12806241-12806362,12806067-12806158,12805940-12806008,12805567-12805898,12805089-12805237,12804937-12805007,12804696-12804869,12804282-12804380,12804104-12804193,12803768-12803855,12803602-12803692,12803459-12803519,12803156-12803335,12802817-12802939,12802651-12802734,12802385-12802569,12802151-12802289,12801986-12802045,12801791-12801895,12801580-12801693	AT4G24860.1  CDS  gene_syn F6I7.70, F6I7_70  go_component chloroplast|GO:0009507||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; LOCATED IN: chloroplast; EXPRESSED IN: shoot apex, sperm cell, leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G62130.1); Has 25407 Blast hits to 23765 proteins in 1808 species: Archae - 910; Bacteria - 8589; Metazoa - 3983; Fungi - 2289; Plants - 1562; Viruses - 21; Other Eukaryotes - 8053 (source: NCBI BLink).  protein_id AT4G24860.1p  transcript_id AT4G24860.1  protein_id AT4G24860.1p  transcript_id AT4G24860.1  
At4g24880	chr4:012808593	0.0	W/12808593-12808942,12809030-12809216,12809307-12809557,12810108-12810222,12810338-12810430,12810870-12811013,12811105-12811218	AT4G24880.1  CDS  gene_syn F13M23.20, F13M23_20  product unknown protein  note unknown protein; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; Has 140 Blast hits to 140 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 2; Plants - 22; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT4G24880.1p  transcript_id AT4G24880.1  protein_id AT4G24880.1p  transcript_id AT4G24880.1  
At4g24890	chr4:012814261	0.0	C/12814261-12814440,12813964-12814055,12813810-12813879,12813604-12813723,12813430-12813522,12813203-12813332,12813010-12813091,12812787-12812919,12812490-12812695,12812281-12812406,12811895-12812204,12811510-12811815	AT4G24890.1  CDS  gene_syn ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, ATPAP24, F13M23.30, F13M23_30, PAP24, PURPLE ACID PHOSPHATASE 24  gene PAP24  go_component cell wall|GO:0005618|14595688|IDA  go_process biological_process|GO:0008150||ND  go_function acid phosphatase activity|GO:0003993|16244908|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PAP24 (PURPLE ACID PHOSPHATASE 24); acid phosphatase/ protein serine/threonine phosphatase  note PURPLE ACID PHOSPHATASE 24 (PAP24); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: PAP27 (PURPLE ACID PHOSPHATASE 27); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT5G50400.1); Has 1037 Blast hits to 1029 proteins in 215 species: Archae - 0; Bacteria - 224; Metazoa - 173; Fungi - 56; Plants - 410; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink).  protein_id AT4G24890.1p  transcript_id AT4G24890.1  protein_id AT4G24890.1p  transcript_id AT4G24890.1  
At4g24900	chr4:012814867	0.0	W/12814867-12815129,12815364-12815490,12815621-12815912,12816011-12816087,12816504-12816558,12816697-12817127,12817368-12817388	AT4G24900.1  CDS  gene_syn F13M23.40, F13M23_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; Has 77 Blast hits to 59 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 63; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G24900.1p  transcript_id AT4G24900.1  protein_id AT4G24900.1p  transcript_id AT4G24900.1  
At4g24910	chr4:012817954	0.0	C/12817954-12818901	AT4G24910.1  CDS  gene_syn F13M23.50, F13M23_50  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579, plant (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G67210.1); Has 162 Blast hits to 161 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G24910.1p  transcript_id AT4G24910.1  protein_id AT4G24910.1p  transcript_id AT4G24910.1  
At4g24920	chr4:012820572	0.0	C/12820572-12820665,12820257-12820372	AT4G24920.1  CDS  gene_syn F13M23.60, F13M23_60  go_component membrane|GO:0016020||IEA  go_process protein targeting|GO:0006605||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process protein transport|GO:0015031||IEA  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||IEA  go_process protein targeting|GO:0006605||ISS  go_process intracellular protein transport|GO:0006886||ISS  product protein transport protein SEC61 gamma subunit, putative  note protein transport protein SEC61 gamma subunit, putative; FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, protein transport, protein targeting; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein translocase SEC61 complex gamma subunit (InterPro:IPR008158), Protein secE/sec61-gamma protein (InterPro:IPR001901); BEST Arabidopsis thaliana protein match is: protein transport protein SEC61 gamma subunit, putative (TAIR:AT5G50460.1); Has 409 Blast hits to 409 proteins in 150 species: Archae - 2; Bacteria - 0; Metazoa - 186; Fungi - 85; Plants - 66; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT4G24920.1p  transcript_id AT4G24920.1  protein_id AT4G24920.1p  transcript_id AT4G24920.1  
At4g24930	chr4:012822121	0.0	C/12822121-12822389,12821933-12822047,12821804-12821873,12821496-12821719	AT4G24930.1  CDS  gene_syn F13M23.70, F13M23_70  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product thylakoid lumenal 17.9 kDa protein, chloroplast  note thylakoid lumenal 17.9 kDa protein, chloroplast; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 19 Blast hits to 19 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G24930.1p  transcript_id AT4G24930.1  protein_id AT4G24930.1p  transcript_id AT4G24930.1  
At4g24940	chr4:012823651	0.0	W/12823651-12823733,12824258-12824309,12824416-12824611,12824689-12824768,12824862-12824978,12825151-12825201,12825288-12825354,12825478-12825581,12825661-12825765,12825858-12825971	AT4G24940.1  CDS  gene_syn AT-SAE1-1, ATSAE1A, F13M23.80, F13M23_80, SAE1A, SUMO-ACTIVATING ENZYME 1A  gene SAE1A  function Encodes one of the two subunits of the SUMO activation enzyme required during sumolation. Sumolation is a post-translational protein modification process similar to ubiquitination during which a polypeptide (SUMO) is covalently attached to a target protein.  go_component cellular_component|GO:0005575||ND  go_process protein sumoylation|GO:0016925|12482876|ISS  go_function SUMO activating enzyme activity|GO:0019948|12482876|ISS  go_function SUMO activating enzyme activity|GO:0019948||ISS  product SAE1A (SUMO-ACTIVATING ENZYME 1A); SUMO activating enzyme  note SUMO-ACTIVATING ENZYME 1A (SAE1A); FUNCTIONS IN: SUMO activating enzyme activity; INVOLVED IN: protein sumoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594), Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: SAE1B (SUMO ACTIVATING ENZYME 1B); SUMO activating enzyme (TAIR:AT5G50680.1); Has 3212 Blast hits to 2690 proteins in 568 species: Archae - 53; Bacteria - 752; Metazoa - 1010; Fungi - 489; Plants - 218; Viruses - 0; Other Eukaryotes - 690 (source: NCBI BLink).  protein_id AT4G24940.1p  transcript_id AT4G24940.1  protein_id AT4G24940.1p  transcript_id AT4G24940.1  
At4g24950	chr4:012826282	0.0	W/12826282-12826755	AT4G24950.1  CDS  gene_syn F13M23.90, F13M23_90  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G24950.1p  transcript_id AT4G24950.1  protein_id AT4G24950.1p  transcript_id AT4G24950.1  
At4g24960	chr4:012828060	0.0	W/12828060-12828106,12828227-12828253,12828382-12828688,12828956-12828982	AT4G24960.1  CDS  gene_syn ATHVA22D, Arabidopsis thaliana HVA22 homologue D, F13M23.100, F13M23_100, HVA22D  gene ATHVA22D  function Homologous to a eukaryote specific ABA- and stress-inducible gene first isolated from barley. Groups in one subfamily with ATHVA22E. Along with other members of the ATHVA22 family, it may be involved in regulation of autophagy during development.  go_component cellular_component|GO:0005575||ND  go_process response to cold|GO:0009409|12081371|IEP  go_process response to cold|GO:0009409|16258011|IEP  go_process response to water deprivation|GO:0009414|12081371|IEP  go_process pollen development|GO:0009555|19151132|IMP  go_process response to abscisic acid stimulus|GO:0009737|12081371|IEP  go_process flower development|GO:0009908|19151132|IMP  go_process negative regulation of autophagy|GO:0010507|19151132|IMP  go_process hyperosmotic salinity response|GO:0042538|12081371|IEP  go_function molecular_function|GO:0003674||ND  product ATHVA22D  note ATHVA22D; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 7 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TB2/DP1 and HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: ATHVA22E (TAIR:AT5G50720.1); Has 1024 Blast hits to 1023 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 511; Fungi - 147; Plants - 294; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT4G24960.1p  transcript_id AT4G24960.1  protein_id AT4G24960.1p  transcript_id AT4G24960.1  
At4g24960	chr4:012828401	0.0	W/12828401-12828688,12828956-12828982	AT4G24960.2  CDS  gene_syn ATHVA22D, Arabidopsis thaliana HVA22 homologue D, F13M23.100, F13M23_100, HVA22D  gene ATHVA22D  function Homologous to a eukaryote specific ABA- and stress-inducible gene first isolated from barley. Groups in one subfamily with ATHVA22E. Along with other members of the ATHVA22 family, it may be involved in regulation of autophagy during development.  go_component cellular_component|GO:0005575||ND  go_process response to cold|GO:0009409|12081371|IEP  go_process response to cold|GO:0009409|16258011|IEP  go_process response to water deprivation|GO:0009414|12081371|IEP  go_process pollen development|GO:0009555|19151132|IMP  go_process response to abscisic acid stimulus|GO:0009737|12081371|IEP  go_process flower development|GO:0009908|19151132|IMP  go_process negative regulation of autophagy|GO:0010507|19151132|IMP  go_process hyperosmotic salinity response|GO:0042538|12081371|IEP  go_function molecular_function|GO:0003674||ND  product ATHVA22D  note ATHVA22D; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 7 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TB2/DP1 and HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: ATHVA22E (TAIR:AT5G50720.1); Has 1002 Blast hits to 1001 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 503; Fungi - 143; Plants - 292; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT4G24960.2p  transcript_id AT4G24960.2  protein_id AT4G24960.2p  transcript_id AT4G24960.2  
At4g24970	chr4:012831125	0.0	W/12831125-12831593,12831682-12831756,12831836-12831870,12831945-12832023,12832152-12832244,12832318-12832402,12832552-12832627,12832942-12833070,12833262-12833360,12833449-12833550,12833819-12833974,12834092-12834187,12834307-12834358,12834441-12834552,12834648-12834721,12834810-12834943,12835025-12835078,12835153-12835275,12835369-12835449	AT4G24970.1  CDS  gene_syn F13M23.110, F13M23_110  go_component membrane|GO:0016020|17432890|IDA  go_function ATP binding|GO:0005524||IEA  product ATP-binding region, ATPase-like domain-containing protein  note ATP-binding region, ATPase-like domain-containing protein; FUNCTIONS IN: ATP binding; LOCATED IN: membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATP-binding region, ATPase-like (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: ATP binding (TAIR:AT5G50780.1); Has 557 Blast hits to 520 proteins in 100 species: Archae - 4; Bacteria - 59; Metazoa - 257; Fungi - 12; Plants - 100; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).  protein_id AT4G24970.1p  transcript_id AT4G24970.1  protein_id AT4G24970.1p  transcript_id AT4G24970.1  
At4g24972	chr4:012838220	0.0	W/12838220-12838307,12838439-12838534,12839273-12839619	AT4G24972.1  CDS  gene_syn TAPETUM DETERMINANT 1, TPD1  gene TPD1  function Encodes a novel small protein which is similar to proteins of unknown function from other plant species. TPD1 is involved in cell specification during anther and pollen development. Identified in a screen for male steriles. Mutants lack tapetal cells and have an increased number of microsporocytes. Expressed in flower buds, leaves and young seedlings. In anthers, TPD1 is expressed throughout pollen development in parietal cells and sporocytes. Physically interacts with the LRR kinase EMS1 and that interaction results in phosphorylation of TPD1.  go_component endomembrane system|GO:0012505||IEA  go_process cell fate determination|GO:0001709|14615601|IMP  go_process anther development|GO:0048653|14615601|IDA  go_function molecular_function|GO:0003674||ND  product TPD1 (TAPETUM DETERMINANT 1)  note TAPETUM DETERMINANT 1 (TPD1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anther development, cell fate determination; LOCATED IN: endomembrane system; EXPRESSED IN: microsporocyte, floral meristem, anther, flower, leaf; EXPRESSED DURING: seedling growth; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32583.1); Has 66 Blast hits to 64 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G24972.1p  transcript_id AT4G24972.1  protein_id AT4G24972.1p  transcript_id AT4G24972.1  
At4g24973	chr4:012840970	0.0	W/12840970-12841374	AT4G24973.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: self-incompatibility protein-related (TAIR:AT4G24975.1); Has 77 Blast hits to 74 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G24973.1p  transcript_id AT4G24973.1  protein_id AT4G24973.1p  transcript_id AT4G24973.1  
At4g24974	chr4:012842889	0.0	W/12842889-12843287	AT4G24974.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: self-incompatibility protein-related (TAIR:AT4G24975.1); Has 73 Blast hits to 70 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G24974.1p  transcript_id AT4G24974.1  protein_id AT4G24974.1p  transcript_id AT4G24974.1  
At4g24975	chr4:012843802	0.0	W/12843802-12844209	AT4G24975.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product self-incompatibility protein-related  note self-incompatibility protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24974.1); Has 80 Blast hits to 77 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G24975.1p  transcript_id AT4G24975.1  protein_id AT4G24975.1p  transcript_id AT4G24975.1  
At4g24977	chr4:012845676	0.0	W/12845676-12846015	AT4G24977.1  pseudogenic_transcript  pseudo  function Pseudogene of AT4G24972; TPD1 (TAPETUM DETERMINANT 1)  
At4g24980	chr4:012848261	0.0	C/12848261-12848376,12847923-12848039,12847581-12847812,12847352-12847398,12847129-12847266,12846935-12847049,12846797-12846844	AT4G24980.1  CDS  gene_syn F13M23.120, F13M23_120  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT5G13670.1); Has 563 Blast hits to 558 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 562; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G24980.1p  transcript_id AT4G24980.1  protein_id AT4G24980.1p  transcript_id AT4G24980.1  
At4g24990	chr4:012851120	0.0	C/12851120-12851249,12850697-12850867,12849973-12850028	AT4G24990.1  CDS  gene_syn ATGP4, F13M23.130, F13M23_130  gene ATGP4  function geranylgeranylated protein ATGP4  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein modification process|GO:0006464||IEA  go_function molecular_function|GO:0003674||ND  product ATGP4  note ATGP4; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Membrane-anchored ubiquitin-fold protein, HCG-1 (InterPro:IPR017000), Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: MUB4 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 4 PRECURSOR) (TAIR:AT3G26980.1); Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G24990.1p  transcript_id AT4G24990.1  protein_id AT4G24990.1p  transcript_id AT4G24990.1  
At4g25000	chr4:012853736	0.0	C/12853736-12853825,12853525-12853657,12853023-12853453,12852433-12852798,12852109-12852360	AT4G25000.1  CDS  gene_syn ALPHA-AMYLASE-LIKE, AMY1, ATAMY1, F13M23.140, F13M23_140  gene AMY1  function Predicted to be secreted protein based on signalP prediction. Involved in starch mobilization. Mutants are defective in alpha-amylase activity. (Note: AMY1 has been found in the literature to be referred to as AMY3, which is not to be confused with AMY3/At1g69830).  go_component extracellular region|GO:0005576|15637061|TAS  go_component apoplast|GO:0048046|17324226|IDA  go_process response to abscisic acid stimulus|GO:0009737|17324226|IEP  go_process response to gibberellin stimulus|GO:0009739|15927942|IEP  go_function alpha-amylase activity|GO:0004556|17324226|IMP  go_function alpha-amylase activity|GO:0004556||ISS  product AMY1 (ALPHA-AMYLASE-LIKE); alpha-amylase  note ALPHA-AMYLASE-LIKE (AMY1); FUNCTIONS IN: alpha-amylase activity; INVOLVED IN: response to gibberellin stimulus, response to abscisic acid stimulus; LOCATED IN: extracellular region, apoplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase family 13 (InterPro:IPR006046), Alpha-amylase, plant (InterPro:IPR013775), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycosyl hydrolase, family 13, catalytic region (InterPro:IPR006047), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Alpha-amylase, C-terminal beta-sheet (InterPro:IPR012850); BEST Arabidopsis thaliana protein match is: AMY2 (ALPHA-AMYLASE-LIKE 2); alpha-amylase/ calcium ion binding / catalytic/ cation binding (TAIR:AT1G76130.1); Has 4049 Blast hits to 4036 proteins in 1014 species: Archae - 43; Bacteria - 2870; Metazoa - 286; Fungi - 348; Plants - 301; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink).  protein_id AT4G25000.1p  transcript_id AT4G25000.1  protein_id AT4G25000.1p  transcript_id AT4G25000.1  
At4g25010	chr4:012856306	0.0	C/12856306-12856351,12856149-12856185,12855850-12856063,12855602-12855763,12855264-12855383,12854630-12854896	AT4G25010.1  CDS  gene_syn F13M23.150, F13M23_150  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  product nodulin MtN3 family protein  note nodulin MtN3 family protein; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: MtN3 and saliva related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), MtN3 and saliva related transmembrane protein (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: nodulin MtN3 family protein (TAIR:AT5G50800.1); Has 579 Blast hits to 535 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 225; Fungi - 0; Plants - 291; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT4G25010.1p  transcript_id AT4G25010.1  protein_id AT4G25010.1p  transcript_id AT4G25010.1  
At4g25020	chr4:012860805	0.0	C/12860805-12861932	AT4G25020.1  CDS  gene_syn F13M23.160, F13M23_160  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component intracellular|GO:0005622||ISS  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product KOW domain-containing protein / D111/G-patch domain-containing protein  note KOW domain-containing protein / D111/G-patch domain-containing protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: KOW (InterPro:IPR005824), D111/G-patch (InterPro:IPR000467); BEST Arabidopsis thaliana protein match is: MOS2 (modifier of snc1, 2); RNA binding / nucleic acid binding / protein binding (TAIR:AT1G33520.1); Has 309 Blast hits to 271 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 176; Fungi - 52; Plants - 45; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT4G25020.1p  transcript_id AT4G25020.1  protein_id AT4G25020.1p  transcript_id AT4G25020.1  
At4g25030	chr4:012865336	0.0	W/12865336-12865461,12865537-12865803,12865997-12866638	AT4G25030.1  CDS  gene_syn F13M23.170, F13M23_170  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45410.3); Has 71 Blast hits to 71 proteins in 18 species: Archae - 0; Bacteria - 20; Metazoa - 0; Fungi - 4; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G25030.1p  transcript_id AT4G25030.1  protein_id AT4G25030.1p  transcript_id AT4G25030.1  
At4g25030	chr4:012865336	0.0	W/12865336-12865461,12865537-12865803,12865997-12866638	AT4G25030.2  CDS  gene_syn F13M23.170, F13M23_170  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45410.3); Has 71 Blast hits to 71 proteins in 18 species: Archae - 0; Bacteria - 20; Metazoa - 0; Fungi - 4; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G25030.2p  transcript_id AT4G25030.2  protein_id AT4G25030.2p  transcript_id AT4G25030.2  
At4g25040	chr4:012868320	0.0	W/12868320-12868501,12868852-12868966,12869104-12869319	AT4G25040.1  CDS  gene_syn F24A6.5  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane family protein  note integral membrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT4G03540.1); Has 263 Blast hits to 263 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 263; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G25040.1p  transcript_id AT4G25040.1  protein_id AT4G25040.1p  transcript_id AT4G25040.1  
At4g25050	chr4:012870178	0.0	W/12870178-12870237,12870389-12870478,12870567-12870689,12870884-12871024	AT4G25050.1  CDS  gene_syn ACP4, F24A6.4, acyl carrier protein 4  gene ACP4  function encodes an acyl carrier protein predominantly expressed in leaves. Gene expression is upregulated by light.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process fatty acid biosynthetic process|GO:0006633|12805604|IMP  go_process response to light stimulus|GO:0009416|11788768|IEP  go_function acyl carrier activity|GO:0000036|11788768|ISS  product ACP4 (acyl carrier protein 4); acyl carrier  note acyl carrier protein 4 (ACP4); FUNCTIONS IN: acyl carrier activity; INVOLVED IN: response to light stimulus, fatty acid biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phosphopantetheine-binding (InterPro:IPR006163), Acyl carrier protein (ACP) (InterPro:IPR003231), Acyl carrier protein-like (InterPro:IPR009081), Phosphopantetheine attachment site (InterPro:IPR006162); BEST Arabidopsis thaliana protein match is: ACP1 (acyl carrier protein 1); acyl carrier (TAIR:AT3G05020.1); Has 4669 Blast hits to 4669 proteins in 1335 species: Archae - 0; Bacteria - 2532; Metazoa - 126; Fungi - 88; Plants - 235; Viruses - 2; Other Eukaryotes - 1686 (source: NCBI BLink).  protein_id AT4G25050.1p  transcript_id AT4G25050.1  protein_id AT4G25050.1p  transcript_id AT4G25050.1  
At4g25070	chr4:012872482	0.0	W/12872482-12873626,12873705-12873792,12873875-12873916,12874015-12874077,12874169-12874218,12874297-12874324,12874467-12874541,12874664-12874774,12874868-12874928,12875243-12875356,12875445-12875563,12875656-12875725,12875811-12875852,12876013-12876053,12876144-12876270,12876341-12876468	AT4G25070.2  CDS  gene_syn F24A6.14  product unknown protein  note unknown protein; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48860.2); Has 11240 Blast hits to 8282 proteins in 751 species: Archae - 101; Bacteria - 1089; Metazoa - 6264; Fungi - 802; Plants - 358; Viruses - 71; Other Eukaryotes - 2555 (source: NCBI BLink).  protein_id AT4G25070.2p  transcript_id AT4G25070.2  protein_id AT4G25070.2p  transcript_id AT4G25070.2  
At4g25070	chr4:012872482	0.0	W/12872482-12873626,12873711-12873792,12873875-12873916,12874015-12874077,12874169-12874218,12874297-12874324,12874467-12874541,12874664-12874774,12874868-12874928,12875243-12875356,12875445-12875563,12875656-12875725,12875811-12875852,12876013-12876053,12876144-12876270,12876341-12876468	AT4G25070.1  CDS  gene_syn F24A6.14  product unknown protein  note unknown protein; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48860.2); Has 12533 Blast hits to 8928 proteins in 789 species: Archae - 105; Bacteria - 1114; Metazoa - 7023; Fungi - 832; Plants - 437; Viruses - 82; Other Eukaryotes - 2940 (source: NCBI BLink).  protein_id AT4G25070.1p  transcript_id AT4G25070.1  protein_id AT4G25070.1p  transcript_id AT4G25070.1  
At4g25080	chr4:012877015	0.0	W/12877015-12877569,12877745-12878128	AT4G25080.1  CDS  gene_syn CHLM, F24A6.6, MGPIXMT, magnesium-protoporphyrin IX methyltransferase  gene CHLM  function Encodes a protein with methyltransferase activity responsible for the methylation of magnesium protoporphyrin IX. Mutants defective in this gene are affected in chlorophyll biosynthesis and show a reduction in the accumulation of a number of major thylakoid-associated proteins including components of PSI (LHCI), PSII (LHCII, D1, CP43) and the cytochrome b6f complex (Cytf). By contrast, no significant changes were detected for the proteins of the stroma and the chloroplast envelope.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast thylakoid membrane|GO:0009535|11784318|IDA  go_component chloroplast envelope|GO:0009941|11784318|IDA  go_process chlorophyll biosynthetic process|GO:0015995|11784318|TAS  go_process chlorophyll biosynthetic process|GO:0015995|17135235|IMP  go_function magnesium protoporphyrin IX methyltransferase activity|GO:0046406|11784318|IDA  product CHLM (magnesium-protoporphyrin IX methyltransferase); magnesium protoporphyrin IX methyltransferase  note magnesium-protoporphyrin IX methyltransferase (CHLM); FUNCTIONS IN: magnesium protoporphyrin IX methyltransferase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Magnesium-protoporphyrin IX methyltransferase, C-terminal (InterPro:IPR010940), Magnesium protoporphyrin O-methyltransferase (InterPro:IPR010251); Has 2387 Blast hits to 2387 proteins in 708 species: Archae - 27; Bacteria - 1421; Metazoa - 28; Fungi - 17; Plants - 48; Viruses - 0; Other Eukaryotes - 846 (source: NCBI BLink).  protein_id AT4G25080.1p  transcript_id AT4G25080.1  protein_id AT4G25080.1p  transcript_id AT4G25080.1  
At4g25080	chr4:012877015	0.0	W/12877015-12877569,12877745-12878128	AT4G25080.2  CDS  gene_syn CHLM, F24A6.6, MGPIXMT, magnesium-protoporphyrin IX methyltransferase  gene CHLM  function Encodes a protein with methyltransferase activity responsible for the methylation of magnesium protoporphyrin IX. Mutants defective in this gene are affected in chlorophyll biosynthesis and show a reduction in the accumulation of a number of major thylakoid-associated proteins including components of PSI (LHCI), PSII (LHCII, D1, CP43) and the cytochrome b6f complex (Cytf). By contrast, no significant changes were detected for the proteins of the stroma and the chloroplast envelope.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast thylakoid membrane|GO:0009535|11784318|IDA  go_component chloroplast envelope|GO:0009941|11784318|IDA  go_process chlorophyll biosynthetic process|GO:0015995|11784318|TAS  go_process chlorophyll biosynthetic process|GO:0015995|17135235|IMP  go_function magnesium protoporphyrin IX methyltransferase activity|GO:0046406|11784318|IDA  product CHLM (magnesium-protoporphyrin IX methyltransferase); magnesium protoporphyrin IX methyltransferase  note magnesium-protoporphyrin IX methyltransferase (CHLM); FUNCTIONS IN: magnesium protoporphyrin IX methyltransferase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Magnesium-protoporphyrin IX methyltransferase, C-terminal (InterPro:IPR010940), Magnesium protoporphyrin O-methyltransferase (InterPro:IPR010251); Has 2387 Blast hits to 2387 proteins in 708 species: Archae - 27; Bacteria - 1421; Metazoa - 28; Fungi - 17; Plants - 48; Viruses - 0; Other Eukaryotes - 846 (source: NCBI BLink).  protein_id AT4G25080.2p  transcript_id AT4G25080.2  protein_id AT4G25080.2p  transcript_id AT4G25080.2  
At4g25080	chr4:012877015	0.0	W/12877015-12877569,12877745-12878128	AT4G25080.3  CDS  gene_syn CHLM, F24A6.6, MGPIXMT, magnesium-protoporphyrin IX methyltransferase  gene CHLM  function Encodes a protein with methyltransferase activity responsible for the methylation of magnesium protoporphyrin IX. Mutants defective in this gene are affected in chlorophyll biosynthesis and show a reduction in the accumulation of a number of major thylakoid-associated proteins including components of PSI (LHCI), PSII (LHCII, D1, CP43) and the cytochrome b6f complex (Cytf). By contrast, no significant changes were detected for the proteins of the stroma and the chloroplast envelope.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast thylakoid membrane|GO:0009535|11784318|IDA  go_component chloroplast envelope|GO:0009941|11784318|IDA  go_process chlorophyll biosynthetic process|GO:0015995|11784318|TAS  go_process chlorophyll biosynthetic process|GO:0015995|17135235|IMP  go_function magnesium protoporphyrin IX methyltransferase activity|GO:0046406|11784318|IDA  product CHLM (magnesium-protoporphyrin IX methyltransferase); magnesium protoporphyrin IX methyltransferase  note magnesium-protoporphyrin IX methyltransferase (CHLM); FUNCTIONS IN: magnesium protoporphyrin IX methyltransferase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Magnesium-protoporphyrin IX methyltransferase, C-terminal (InterPro:IPR010940), Magnesium protoporphyrin O-methyltransferase (InterPro:IPR010251); Has 2387 Blast hits to 2387 proteins in 708 species: Archae - 27; Bacteria - 1421; Metazoa - 28; Fungi - 17; Plants - 48; Viruses - 0; Other Eukaryotes - 846 (source: NCBI BLink).  protein_id AT4G25080.3p  transcript_id AT4G25080.3  protein_id AT4G25080.3p  transcript_id AT4G25080.3  
At4g25080	chr4:012877216	0.0	W/12877216-12877569,12877745-12878128	AT4G25080.4  CDS  gene_syn CHLM, F24A6.6, MGPIXMT, magnesium-protoporphyrin IX methyltransferase  gene CHLM  function Encodes a protein with methyltransferase activity responsible for the methylation of magnesium protoporphyrin IX. Mutants defective in this gene are affected in chlorophyll biosynthesis and show a reduction in the accumulation of a number of major thylakoid-associated proteins including components of PSI (LHCI), PSII (LHCII, D1, CP43) and the cytochrome b6f complex (Cytf). By contrast, no significant changes were detected for the proteins of the stroma and the chloroplast envelope.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|11784318|IDA  go_component chloroplast envelope|GO:0009941|11784318|IDA  go_process chlorophyll biosynthetic process|GO:0015995|11784318|TAS  go_process chlorophyll biosynthetic process|GO:0015995|17135235|IMP  go_function magnesium protoporphyrin IX methyltransferase activity|GO:0046406|11784318|IDA  product CHLM (magnesium-protoporphyrin IX methyltransferase); magnesium protoporphyrin IX methyltransferase  note magnesium-protoporphyrin IX methyltransferase (CHLM); FUNCTIONS IN: magnesium protoporphyrin IX methyltransferase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Magnesium-protoporphyrin IX methyltransferase, C-terminal (InterPro:IPR010940), Magnesium protoporphyrin O-methyltransferase (InterPro:IPR010251); Has 2383 Blast hits to 2383 proteins in 707 species: Archae - 27; Bacteria - 1417; Metazoa - 28; Fungi - 17; Plants - 48; Viruses - 0; Other Eukaryotes - 846 (source: NCBI BLink).  protein_id AT4G25080.4p  transcript_id AT4G25080.4  protein_id AT4G25080.4p  transcript_id AT4G25080.4  
At4g25090	chr4:012883197	0.0	C/12883197-12883599,12882961-12883117,12882799-12882847,12882436-12882549,12881907-12882344,12881363-12881755,12881078-12881289,12880890-12880992,12880744-12880796,12879340-12879857,12878930-12879039	AT4G25090.1  CDS  gene_syn F24A6.3  go_component vacuole|GO:0005773|15539469|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process oxidation reduction|GO:0055114||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function iron ion binding|GO:0005506||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor|GO:0050664||IEA  product respiratory burst oxidase, putative / NADPH oxidase, putative  note respiratory burst oxidase, putative / NADPH oxidase, putative; FUNCTIONS IN: in 7 functions; INVOLVED IN: oxidation reduction; LOCATED IN: cytosolic ribosome, vacuole; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), EF-HAND 1 (InterPro:IPR018247), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), Ferric reductase, NAD binding (InterPro:IPR013121), NADPH oxidase Respiratory burst (InterPro:IPR013623), EF-HAND 2 (InterPro:IPR018249), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: RHD2 (ROOT HAIR DEFECTIVE 2); NAD(P)H oxidase (TAIR:AT5G51060.1); Has 1708 Blast hits to 1600 proteins in 280 species: Archae - 6; Bacteria - 218; Metazoa - 604; Fungi - 473; Plants - 264; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).  protein_id AT4G25090.1p  transcript_id AT4G25090.1  protein_id AT4G25090.1p  transcript_id AT4G25090.1  
At4g25100	chr4:012885490	0.0	C/12885490-12885660,12885231-12885402,12885088-12885155,12884956-12884982,12884836-12884859,12884649-12884747	AT4G25100.4  CDS  gene_syn F24A6.1, FE SUPEROXIDE DISMUTASE 1, FSD1  gene FSD1  function Fe-superoxide dismutase  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_function copper ion binding|GO:0005507|16526091|IDA  go_component mitochondrion|GO:0005739|12492832|IDA  go_component chloroplast|GO:0009507|15772282|NAS  go_component chloroplast|GO:0009507|9765550|IDA  go_process response to oxidative stress|GO:0006979|12492832|IDA  go_process circadian rhythm|GO:0007623|9765550|IEP  go_process removal of superoxide radicals|GO:0019430|2263641|IC  go_process response to copper ion|GO:0046688|15772282|IEP  go_function superoxide dismutase activity|GO:0004784|2263641|IDA  product FSD1 (FE SUPEROXIDE DISMUTASE 1); copper ion binding / superoxide dismutase  note FE SUPEROXIDE DISMUTASE 1 (FSD1); FUNCTIONS IN: superoxide dismutase activity, copper ion binding; INVOLVED IN: response to oxidative stress, removal of superoxide radicals, response to copper ion, circadian rhythm; LOCATED IN: mitochondrion, chloroplast, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Manganese and iron superoxide dismutase (InterPro:IPR001189); BEST Arabidopsis thaliana protein match is: FSD2 (FE SUPEROXIDE DISMUTASE 2); superoxide dismutase (TAIR:AT5G51100.1); Has 7904 Blast hits to 7903 proteins in 2195 species: Archae - 145; Bacteria - 5086; Metazoa - 348; Fungi - 588; Plants - 255; Viruses - 1; Other Eukaryotes - 1481 (source: NCBI BLink).  protein_id AT4G25100.4p  transcript_id AT4G25100.4  protein_id AT4G25100.4p  transcript_id AT4G25100.4  
At4g25100	chr4:012886442	0.0	C/12886442-12886501,12885490-12885678,12885231-12885402,12885088-12885155,12884956-12884982,12884836-12884859,12884649-12884747	AT4G25100.1  CDS  gene_syn F24A6.1, FE SUPEROXIDE DISMUTASE 1, FSD1  gene FSD1  function Fe-superoxide dismutase  go_component mitochondrion|GO:0005739|15276431|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_function copper ion binding|GO:0005507|16526091|IDA  go_component mitochondrion|GO:0005739|12492832|IDA  go_component chloroplast|GO:0009507|15772282|NAS  go_component chloroplast|GO:0009507|9765550|IDA  go_process response to oxidative stress|GO:0006979|12492832|IDA  go_process circadian rhythm|GO:0007623|9765550|IEP  go_process removal of superoxide radicals|GO:0019430|2263641|IC  go_process response to copper ion|GO:0046688|15772282|IEP  go_function superoxide dismutase activity|GO:0004784|2263641|IDA  product FSD1 (FE SUPEROXIDE DISMUTASE 1); copper ion binding / superoxide dismutase  note FE SUPEROXIDE DISMUTASE 1 (FSD1); FUNCTIONS IN: superoxide dismutase activity, copper ion binding; INVOLVED IN: response to oxidative stress, removal of superoxide radicals, response to copper ion, circadian rhythm; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Manganese and iron superoxide dismutase (InterPro:IPR001189); BEST Arabidopsis thaliana protein match is: FSD2 (FE SUPEROXIDE DISMUTASE 2); superoxide dismutase (TAIR:AT5G51100.1); Has 7965 Blast hits to 7964 proteins in 2198 species: Archae - 145; Bacteria - 5093; Metazoa - 350; Fungi - 593; Plants - 256; Viruses - 1; Other Eukaryotes - 1527 (source: NCBI BLink).  protein_id AT4G25100.1p  transcript_id AT4G25100.1  protein_id AT4G25100.1p  transcript_id AT4G25100.1  
At4g25100	chr4:012886442	0.0	C/12886442-12886501,12885490-12885678,12885231-12885402,12885088-12885155,12884956-12884982,12884836-12884859,12884649-12884747	AT4G25100.2  CDS  gene_syn F24A6.1, FE SUPEROXIDE DISMUTASE 1, FSD1  gene FSD1  function Fe-superoxide dismutase  go_component mitochondrion|GO:0005739|15276431|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_function copper ion binding|GO:0005507|16526091|IDA  go_component mitochondrion|GO:0005739|12492832|IDA  go_component chloroplast|GO:0009507|15772282|NAS  go_component chloroplast|GO:0009507|9765550|IDA  go_process response to oxidative stress|GO:0006979|12492832|IDA  go_process circadian rhythm|GO:0007623|9765550|IEP  go_process removal of superoxide radicals|GO:0019430|2263641|IC  go_process response to copper ion|GO:0046688|15772282|IEP  go_function superoxide dismutase activity|GO:0004784|2263641|IDA  product FSD1 (FE SUPEROXIDE DISMUTASE 1); copper ion binding / superoxide dismutase  note FE SUPEROXIDE DISMUTASE 1 (FSD1); FUNCTIONS IN: superoxide dismutase activity, copper ion binding; INVOLVED IN: response to oxidative stress, removal of superoxide radicals, response to copper ion, circadian rhythm; LOCATED IN: thylakoid, mitochondrion, plasma membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Manganese and iron superoxide dismutase (InterPro:IPR001189); BEST Arabidopsis thaliana protein match is: FSD2 (FE SUPEROXIDE DISMUTASE 2); superoxide dismutase (TAIR:AT5G51100.1); Has 7965 Blast hits to 7964 proteins in 2198 species: Archae - 145; Bacteria - 5093; Metazoa - 350; Fungi - 593; Plants - 256; Viruses - 1; Other Eukaryotes - 1527 (source: NCBI BLink).  protein_id AT4G25100.2p  transcript_id AT4G25100.2  protein_id AT4G25100.2p  transcript_id AT4G25100.2  
At4g25100	chr4:012886442	0.0	C/12886442-12886501,12885490-12885678,12885231-12885402,12885088-12885155,12884956-12884982,12884836-12884859,12884649-12884747	AT4G25100.3  CDS  gene_syn F24A6.1, FE SUPEROXIDE DISMUTASE 1, FSD1  gene FSD1  function Fe-superoxide dismutase  go_component mitochondrion|GO:0005739|15276431|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_function copper ion binding|GO:0005507|16526091|IDA  go_component mitochondrion|GO:0005739|12492832|IDA  go_component chloroplast|GO:0009507|15772282|NAS  go_component chloroplast|GO:0009507|9765550|IDA  go_process response to oxidative stress|GO:0006979|12492832|IDA  go_process circadian rhythm|GO:0007623|9765550|IEP  go_process removal of superoxide radicals|GO:0019430|2263641|IC  go_process response to copper ion|GO:0046688|15772282|IEP  go_function superoxide dismutase activity|GO:0004784|2263641|IDA  product FSD1 (FE SUPEROXIDE DISMUTASE 1); copper ion binding / superoxide dismutase  note FE SUPEROXIDE DISMUTASE 1 (FSD1); FUNCTIONS IN: superoxide dismutase activity, copper ion binding; INVOLVED IN: response to oxidative stress, removal of superoxide radicals, response to copper ion, circadian rhythm; LOCATED IN: thylakoid, mitochondrion, plasma membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Manganese and iron superoxide dismutase (InterPro:IPR001189); BEST Arabidopsis thaliana protein match is: FSD2 (FE SUPEROXIDE DISMUTASE 2); superoxide dismutase (TAIR:AT5G51100.1); Has 7965 Blast hits to 7964 proteins in 2198 species: Archae - 145; Bacteria - 5093; Metazoa - 350; Fungi - 593; Plants - 256; Viruses - 1; Other Eukaryotes - 1527 (source: NCBI BLink).  protein_id AT4G25100.3p  transcript_id AT4G25100.3  protein_id AT4G25100.3p  transcript_id AT4G25100.3  
At4g25110	chr4:012889470	0.0	C/12889470-12889953,12889063-12889390,12888725-12888845,12888277-12888537,12887738-12887797	AT4G25110.2  CDS  gene_syn AtMC2, F24A6.7, metacaspase 2  gene AtMC2  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_process proteolysis|GO:0006508||ISS  product AtMC2 (metacaspase 2); cysteine-type endopeptidase  note metacaspase 2 (AtMC2); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600), Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: AMC1 (METACASPASE 1); cysteine-type endopeptidase (TAIR:AT1G02170.1); Has 6983 Blast hits to 3350 proteins in 423 species: Archae - 6; Bacteria - 576; Metazoa - 994; Fungi - 817; Plants - 2868; Viruses - 584; Other Eukaryotes - 1138 (source: NCBI BLink).  protein_id AT4G25110.2p  transcript_id AT4G25110.2  protein_id AT4G25110.2p  transcript_id AT4G25110.2  
At4g25110	chr4:012889470	0.0	C/12889470-12889953,12889063-12889393,12888725-12888845,12888277-12888537,12887738-12887797	AT4G25110.1  CDS  gene_syn AtMC2, F24A6.7, metacaspase 2  gene AtMC2  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_process proteolysis|GO:0006508||ISS  product AtMC2 (metacaspase 2); cysteine-type endopeptidase  note metacaspase 2 (AtMC2); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600), Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: AMC1 (METACASPASE 1); cysteine-type endopeptidase (TAIR:AT1G02170.1); Has 7004 Blast hits to 3377 proteins in 428 species: Archae - 6; Bacteria - 590; Metazoa - 997; Fungi - 825; Plants - 2862; Viruses - 584; Other Eukaryotes - 1140 (source: NCBI BLink).  protein_id AT4G25110.1p  transcript_id AT4G25110.1  protein_id AT4G25110.1p  transcript_id AT4G25110.1  
At4g25120	chr4:012890694	0.0	W/12890694-12890842,12891156-12891825,12891922-12891963,12892081-12892244,12893005-12893221,12893338-12893394,12893477-12893582,12893673-12893806,12893884-12893958,12894077-12894202,12894283-12894414,12894515-12894598,12894765-12894878,12895004-12895104,12895437-12895503,12895619-12895669,12895957-12896034,12896113-12896316,12896430-12896468,12896606-12896677,12896777-12896863,12896937-12896993,12897067-12897269,12897359-12897452,12897561-12897611,12897768-12897830,12897930-12897989,12898073-12898135,12898220-12898309	AT4G25120.1  CDS  gene_syn F24A6.8  go_process DNA repair|GO:0006281||IEA  go_function DNA binding|GO:0003677||IEA  go_function ATP-dependent DNA helicase activity|GO:0004003||IEA  go_function ATP binding|GO:0005524||IEA  go_function hydrolase activity|GO:0016787||IEA  go_function ATP binding|GO:0005524||ISS  product ATP binding / ATP-dependent DNA helicase/ DNA binding / hydrolase  note ATP binding / ATP-dependent DNA helicase/ DNA binding / hydrolase; FUNCTIONS IN: ATP-dependent DNA helicase activity, hydrolase activity, DNA binding, ATP binding; INVOLVED IN: DNA repair; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: DNA helicase, UvrD-like, C-terminal (InterPro:IPR014017), Helicase, superfamily 1, UvrD-related (InterPro:IPR014016), DNA helicase, UvrD/REP type (InterPro:IPR000212); Has 14949 Blast hits to 13875 proteins in 1460 species: Archae - 103; Bacteria - 8453; Metazoa - 13; Fungi - 142; Plants - 20; Viruses - 9; Other Eukaryotes - 6209 (source: NCBI BLink).  protein_id AT4G25120.1p  transcript_id AT4G25120.1  protein_id AT4G25120.1p  transcript_id AT4G25120.1  
At4g25130	chr4:012899474	0.0	C/12899474-12899998,12898802-12899053	AT4G25130.1  CDS  gene_syn F24A6.2  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process protein metabolic process|GO:0019538||IEA  go_function oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor|GO:0016671||IEA  go_process protein modification process|GO:0006464||ISS  go_function peptide-methionine-(S)-S-oxide reductase activity|GO:0008113||ISS  product peptide methionine sulfoxide reductase, putative  note peptide methionine sulfoxide reductase, putative; FUNCTIONS IN: peptide-methionine-(S)-S-oxide reductase activity, oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: protein modification process, protein metabolic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Methionine sulphoxide reductase A (InterPro:IPR002569); BEST Arabidopsis thaliana protein match is: PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1); oxidoreductase, acting on sulfur group of donors, disulfide as acceptor / peptide-methionine-(S)-S-oxide reductase (TAIR:AT5G61640.1); Has 7185 Blast hits to 7183 proteins in 1356 species: Archae - 86; Bacteria - 3332; Metazoa - 164; Fungi - 91; Plants - 129; Viruses - 1; Other Eukaryotes - 3382 (source: NCBI BLink).  protein_id AT4G25130.1p  transcript_id AT4G25130.1  protein_id AT4G25130.1p  transcript_id AT4G25130.1  
At4g25140	chr4:012900498	0.0	W/12900498-12900850,12901091-12901259	AT4G25140.1  CDS  gene_syn F24A6.9, OLE1, OLEO1, OLEOSIN 1  gene OLEO1  function Encodes oleosin1, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Functions in freezing tolerance of seeds.  go_component monolayer-surrounded lipid storage body|GO:0012511||IEA  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  go_process seed germination|GO:0009845|18485063|IGI  go_process seed oilbody biogenesis|GO:0010344|16877495|IMP  go_process seed oilbody biogenesis|GO:0010344|18485063|IGI  go_process lipid storage|GO:0019915|16877495|IMP  go_process lipid storage|GO:0019915||ISS  go_process response to freezing|GO:0050826|18485063|IMP  go_function molecular_function|GO:0003674||ND  product OLEO1 (OLEOSIN 1)  note OLEOSIN 1 (OLEO1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to freezing, lipid storage, seed germination, seed oilbody biogenesis; LOCATED IN: monolayer-surrounded lipid storage body, integral to membrane, membrane; EXPRESSED IN: shoot apex; CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136); BEST Arabidopsis thaliana protein match is: OLEO3 (OLEOSIN3) (TAIR:AT5G51210.1); Has 420 Blast hits to 420 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 420; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G25140.1p  transcript_id AT4G25140.1  protein_id AT4G25140.1p  transcript_id AT4G25140.1  
At4g25150	chr4:012902488	0.0	C/12902488-12902882,12902083-12902292,12901736-12901913	AT4G25150.1  CDS  gene_syn F24A6.12  go_component endomembrane system|GO:0012505||IEA  go_function acid phosphatase activity|GO:0003993||IEA  go_process biological_process|GO:0008150||ND  go_function acid phosphatase activity|GO:0003993||ISS  product acid phosphatase, putative  note acid phosphatase, putative; FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519), Vegetative storage protein/acid phosphatase (InterPro:IPR014403), Acid phosphatase, plant (InterPro:IPR010028); BEST Arabidopsis thaliana protein match is: acid phosphatase, putative (TAIR:AT5G51260.1); Has 559 Blast hits to 559 proteins in 162 species: Archae - 0; Bacteria - 269; Metazoa - 2; Fungi - 0; Plants - 241; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT4G25150.1p  transcript_id AT4G25150.1  protein_id AT4G25150.1p  transcript_id AT4G25150.1  
At4g25160	chr4:012906471	0.0	C/12906471-12906669,12906186-12906307,12905974-12906095,12905714-12905892,12905212-12905627,12905043-12905144,12904531-12904959,12903631-12904389,12903360-12903539	AT4G25160.1  CDS  gene_syn F24A6.13  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process response to stress|GO:0006950||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination, response to stress; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Protein kinase, ATP binding site (InterPro:IPR017441), U box (InterPro:IPR003613), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Protein kinase, core (InterPro:IPR000719), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G61550.1); Has 86511 Blast hits to 84102 proteins in 3280 species: Archae - 62; Bacteria - 7776; Metazoa - 37854; Fungi - 6650; Plants - 18896; Viruses - 319; Other Eukaryotes - 14954 (source: NCBI BLink).  protein_id AT4G25160.1p  transcript_id AT4G25160.1  protein_id AT4G25160.1p  transcript_id AT4G25160.1  
At4g25170	chr4:012909740	0.0	W/12909740-12910149,12910413-12910457,12910597-12910840,12910930-12911035,12911115-12911389	AT4G25170.2  CDS  gene_syn F24A6.10, F24A6_10  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP012943 (InterPro:IPR016606); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G61490.1).  protein_id AT4G25170.2p  transcript_id AT4G25170.2  protein_id AT4G25170.2p  transcript_id AT4G25170.2  
At4g25170	chr4:012909740	0.0	W/12909740-12910149,12910597-12910840,12910930-12911035,12911115-12911389	AT4G25170.1  CDS  gene_syn F24A6.10, F24A6_10  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP012943 (InterPro:IPR016606); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G61490.1); Has 87 Blast hits to 86 proteins in 16 species: Archae - 0; Bacteria - 4; Metazoa - 15; Fungi - 3; Plants - 63; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G25170.1p  transcript_id AT4G25170.1  protein_id AT4G25170.1p  transcript_id AT4G25170.1  
At4g25180	chr4:012913881	0.0	C/12913881-12913907,12913700-12913764,12913542-12913605,12913085-12913109,12912715-12912932,12912557-12912620,12912334-12912428,12912032-12912247,12911746-12911907	AT4G25180.1  CDS  gene_syn F24A6.20, F24A6_20  go_component DNA-directed RNA polymerase III complex|GO:0005666||IEA  go_process transcription from RNA polymerase III promoter|GO:0006383||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product DNA binding / DNA-directed RNA polymerase  note DNA binding / DNA-directed RNA polymerase; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription from RNA polymerase III promoter; LOCATED IN: DNA-directed RNA polymerase III complex; CONTAINS InterPro DOMAIN/s: RNA polymerase III Rpc4 (InterPro:IPR007811); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase III RPC4 family protein (TAIR:AT5G09380.1); Has 101 Blast hits to 101 proteins in 46 species: Archae - 0; Bacteria - 2; Metazoa - 41; Fungi - 12; Plants - 32; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT4G25180.1p  transcript_id AT4G25180.1  protein_id AT4G25180.1p  transcript_id AT4G25180.1  
At4g25190	chr4:012915309	0.0	C/12915309-12916001,12914995-12915231,12914814-12914903,12914602-12914709,12914400-12914456	AT4G25190.1  CDS  gene_syn F24A6.30, F24A6_30  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF566 (InterPro:IPR007573); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30710.1); Has 9486 Blast hits to 1582 proteins in 225 species: Archae - 0; Bacteria - 648; Metazoa - 1669; Fungi - 690; Plants - 199; Viruses - 37; Other Eukaryotes - 6243 (source: NCBI BLink).  protein_id AT4G25190.1p  transcript_id AT4G25190.1  protein_id AT4G25190.1p  transcript_id AT4G25190.1  
At4g25190	chr4:012915309	0.0	C/12915309-12916001,12914995-12915231,12914814-12914903,12914602-12914712,12914400-12914456	AT4G25190.2  CDS  gene_syn F24A6.30, F24A6_30  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF566 (InterPro:IPR007573); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30710.1); Has 5939 Blast hits to 947 proteins in 161 species: Archae - 0; Bacteria - 154; Metazoa - 633; Fungi - 267; Plants - 144; Viruses - 17; Other Eukaryotes - 4724 (source: NCBI BLink).  protein_id AT4G25190.2p  transcript_id AT4G25190.2  protein_id AT4G25190.2p  transcript_id AT4G25190.2  
At4g25200	chr4:012917089	0.0	W/12917089-12917287,12917425-12917858	AT4G25200.1  CDS  gene_syn ATHSP23.6-MITO, F24A6.40, F24A6_40, MITOCHONDRION-LOCALIZED SMALL HEAT SHOCK PROTEIN 23.6, SMALL HEAT SHOCK PROTEIN 23.6  gene ATHSP23.6-MITO  function AtHSP23.6-mito mRNA, nuclear gene encoding mitochondrial  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process response to heat|GO:0009408||ISS  go_function molecular_function|GO:0003674||ND  product ATHSP23.6-MITO (MITOCHONDRION-LOCALIZED SMALL HEAT SHOCK PROTEIN 23.6)  note MITOCHONDRION-LOCALIZED SMALL HEAT SHOCK PROTEIN 23.6 (ATHSP23.6-MITO); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion, response to heat; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: 23.5 kDa mitochondrial small heat shock protein (HSP23.5-M) (TAIR:AT5G51440.1); Has 2754 Blast hits to 2754 proteins in 679 species: Archae - 108; Bacteria - 1339; Metazoa - 1; Fungi - 114; Plants - 915; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink).  protein_id AT4G25200.1p  transcript_id AT4G25200.1  protein_id AT4G25200.1p  transcript_id AT4G25200.1  
At4g25210	chr4:012918446	0.0	W/12918446-12919552	AT4G25210.1  CDS  gene_syn F24A6.50, F24A6_50  go_component nucleolus|GO:0005730|15496452|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process biological_process|GO:0008150||ND  go_function transcription regulator activity|GO:0030528|12535344|TAS  product transcription regulator  note transcription regulator; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00130.1); Has 5777 Blast hits to 3070 proteins in 342 species: Archae - 2; Bacteria - 508; Metazoa - 1816; Fungi - 705; Plants - 351; Viruses - 71; Other Eukaryotes - 2324 (source: NCBI BLink).  protein_id AT4G25210.1p  transcript_id AT4G25210.1  protein_id AT4G25210.1p  transcript_id AT4G25210.1  
At4g25220	chr4:012921161	0.0	W/12921161-12922094,12922182-12922762	AT4G25220.1  CDS  gene_syn F24A6.60, F24A6_60  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product transporter, putative  note transporter, putative; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: transporter, putative (TAIR:AT1G30560.1); Has 14043 Blast hits to 13967 proteins in 1273 species: Archae - 218; Bacteria - 10771; Metazoa - 917; Fungi - 938; Plants - 171; Viruses - 0; Other Eukaryotes - 1028 (source: NCBI BLink).  protein_id AT4G25220.1p  transcript_id AT4G25220.1  protein_id AT4G25220.1p  transcript_id AT4G25220.1  
At4g25225	chr4:012923086	0.0	C/12923086-12923256	AT4G25225.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35736.1); Has 45 Blast hits to 45 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G25225.1p  transcript_id AT4G25225.1  protein_id AT4G25225.1p  transcript_id AT4G25225.1  
At4g25230	chr4:012924446	0.0	W/12924446-12924682,12925259-12925336,12925680-12925766,12925860-12925981,12926434-12926530,12926629-12926734,12926854-12927011,12927124-12927261,12927335-12927402,12927482-12927700,12927961-12928330,12928615-12928671	AT4G25230.1  CDS  gene_syn F24A6.70, F24A6_70, RIN2, RPM1 INTERACTING PROTEIN 2  gene RIN2  function RPM1 interacting protein 2, has a CUE domain which is sufficient for the interaction with RPM1.Positive regulator of RPM1 and PRS2 mediated hypersensitive response.Functions as ubiquitin ligase and binds to RPM1.  go_component plasma membrane|GO:0005886|16212605|IDA  go_process plant-type hypersensitive response|GO:0009626|16212605|IGI  go_function ubiquitin-protein ligase activity|GO:0004842|16212605|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16212605|ISS  go_function protein binding|GO:0005515|16212605|IPI  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product RIN2 (RPM1 INTERACTING PROTEIN 2); protein binding / ubiquitin-protein ligase/ zinc ion binding  note RPM1 INTERACTING PROTEIN 2 (RIN2); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: plant-type hypersensitive response; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Ubiquitin system component Cue (InterPro:IPR003892); BEST Arabidopsis thaliana protein match is: RIN3 (RPM1 INTERACTING PROTEIN 3); protein binding / ubiquitin-protein ligase/ zinc ion binding (TAIR:AT5G51450.1); Has 1498 Blast hits to 1470 proteins in 173 species: Archae - 0; Bacteria - 2; Metazoa - 623; Fungi - 175; Plants - 391; Viruses - 7; Other Eukaryotes - 300 (source: NCBI BLink).  protein_id AT4G25230.1p  transcript_id AT4G25230.1  protein_id AT4G25230.1p  transcript_id AT4G25230.1  
At4g25230	chr4:012924446	0.0	W/12924446-12924682,12925259-12925336,12925680-12925766,12925860-12925981,12926434-12926530,12926629-12926734,12926854-12927011,12927124-12927261,12927335-12927402,12927482-12927700,12927961-12928330,12928615-12928671	AT4G25230.2  CDS  gene_syn F24A6.70, F24A6_70, RIN2, RPM1 INTERACTING PROTEIN 2  gene RIN2  function RPM1 interacting protein 2, has a CUE domain which is sufficient for the interaction with RPM1.Positive regulator of RPM1 and PRS2 mediated hypersensitive response.Functions as ubiquitin ligase and binds to RPM1.  go_component plasma membrane|GO:0005886|16212605|IDA  go_process plant-type hypersensitive response|GO:0009626|16212605|IGI  go_function ubiquitin-protein ligase activity|GO:0004842|16212605|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16212605|ISS  go_function protein binding|GO:0005515|16212605|IPI  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product RIN2 (RPM1 INTERACTING PROTEIN 2); protein binding / ubiquitin-protein ligase/ zinc ion binding  note RPM1 INTERACTING PROTEIN 2 (RIN2); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: plant-type hypersensitive response; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Ubiquitin system component Cue (InterPro:IPR003892); BEST Arabidopsis thaliana protein match is: RIN3 (RPM1 INTERACTING PROTEIN 3); protein binding / ubiquitin-protein ligase/ zinc ion binding (TAIR:AT5G51450.1); Has 1498 Blast hits to 1470 proteins in 173 species: Archae - 0; Bacteria - 2; Metazoa - 623; Fungi - 175; Plants - 391; Viruses - 7; Other Eukaryotes - 300 (source: NCBI BLink).  protein_id AT4G25230.2p  transcript_id AT4G25230.2  protein_id AT4G25230.2p  transcript_id AT4G25230.2  
At4g25235	chr4:012929747	0.0	C/12929747-12930000	AT4G25235.1  pseudogenic_transcript  pseudo  function Encodes a ECA1 gametogenesis related family protein [pseudogene]  
At4g25240	chr4:012930539	0.0	W/12930539-12930682,12931044-12931153,12931254-12931524,12931619-12931754,12932104-12932470,12932572-12932937,12933029-12933107,12933180-12933379,12933467-12933563	AT4G25240.1  CDS  gene_syn F24A6.80, F24A6_80, SKS1, SKU5 SIMILAR 1  gene SKS1  function Encodes GPI-anchored SKU5-like protein.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component anchored to plasma membrane|GO:0046658|12805588|IDA  go_function copper ion binding|GO:0005507||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function copper ion binding|GO:0005507||ISS  product SKS1 (SKU5 SIMILAR 1); copper ion binding / oxidoreductase  note SKU5 SIMILAR 1 (SKS1); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKS2 (SKU5 SIMILAR 2); copper ion binding / oxidoreductase (TAIR:AT5G51480.1); Has 3648 Blast hits to 3630 proteins in 633 species: Archae - 2; Bacteria - 980; Metazoa - 260; Fungi - 1455; Plants - 794; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).  protein_id AT4G25240.1p  transcript_id AT4G25240.1  protein_id AT4G25240.1p  transcript_id AT4G25240.1  
At4g25250	chr4:012934632	0.0	W/12934632-12935231	AT4G25250.1  CDS  gene_syn F24A6.90, F24A6_90  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT5G51520.1); Has 464 Blast hits to 459 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 462; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G25250.1p  transcript_id AT4G25250.1  protein_id AT4G25250.1p  transcript_id AT4G25250.1  
At4g25260	chr4:012936005	0.0	C/12936005-12936610	AT4G25260.1  CDS  gene_syn F24A6.100, F24A6_100  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process shade avoidance|GO:0009641|16565297|IEP  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: shade avoidance; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22) (TAIR:AT5G62350.1); Has 406 Blast hits to 401 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 406; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G25260.1p  transcript_id AT4G25260.1  protein_id AT4G25260.1p  transcript_id AT4G25260.1  
At4g25270	chr4:012937253	0.0	C/12937253-12938836	AT4G25270.1  CDS  gene_syn F24A6.110, F24A6_110  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: CRR2 (CHLORORESPIRATORY REDUCTION 2) (TAIR:AT3G46790.1); Has 13675 Blast hits to 4872 proteins in 139 species: Archae - 0; Bacteria - 6; Metazoa - 111; Fungi - 65; Plants - 13298; Viruses - 0; Other Eukaryotes - 195 (source: NCBI BLink).  protein_id AT4G25270.1p  transcript_id AT4G25270.1  protein_id AT4G25270.1p  transcript_id AT4G25270.1  
At4g25280	chr4:012940685	0.0	C/12940685-12940723,12940509-12940562,12940377-12940431,12940032-12940149,12939795-12939951,12939629-12939709,12939430-12939537,12939242-12939307,12939068-12939139	AT4G25280.1  CDS  gene_syn F24A6.120, F24A6_120  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_function ATP binding|GO:0005524||IEA  go_function phosphotransferase activity, phosphate group as acceptor|GO:0016776||IEA  go_function nucleotide kinase activity|GO:0019201||IEA  go_function nucleobase, nucleoside, nucleotide kinase activity|GO:0019205||IEA  go_function nucleotide kinase activity|GO:0019201||ISS  product adenylate kinase family protein  note adenylate kinase family protein; FUNCTIONS IN: nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, phosphotransferase activity, phosphate group as acceptor, ATP binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UMP-CMP kinase (InterPro:IPR006266), Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: PYR6; cytidylate kinase/ uridylate kinase (TAIR:AT5G26667.3); Has 8572 Blast hits to 8424 proteins in 1844 species: Archae - 61; Bacteria - 4360; Metazoa - 1053; Fungi - 294; Plants - 243; Viruses - 0; Other Eukaryotes - 2561 (source: NCBI BLink).  protein_id AT4G25280.1p  transcript_id AT4G25280.1  protein_id AT4G25280.1p  transcript_id AT4G25280.1  
At4g25290	chr4:012944772	0.0	C/12944772-12944994,12944414-12944547,12944176-12944325,12943985-12944096,12943571-12943871,12943222-12943435,12943049-12943138,12942670-12942925,12942459-12942571,12942238-12942336,12942096-12942143,12941903-12942013,12941718-12941808,12941486-12941622	AT4G25290.1  CDS  gene_syn F24A6.130, F24A6_130  go_process DNA repair|GO:0006281||IEA  go_function DNA photolyase activity|GO:0003913||IEA  go_process DNA repair|GO:0006281||ISS  go_function DNA photolyase activity|GO:0003913||ISS  product DNA photolyase  note DNA photolyase; FUNCTIONS IN: DNA photolyase activity; INVOLVED IN: DNA repair; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA photolyase, N-terminal (InterPro:IPR006050), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT4G36530.2); Has 4147 Blast hits to 4144 proteins in 685 species: Archae - 35; Bacteria - 2248; Metazoa - 244; Fungi - 30; Plants - 260; Viruses - 0; Other Eukaryotes - 1330 (source: NCBI BLink).  protein_id AT4G25290.1p  transcript_id AT4G25290.1  protein_id AT4G25290.1p  transcript_id AT4G25290.1  
At4g25300	chr4:012945263	0.0	W/12945263-12945514,12945671-12945918,12945998-12946325,12946400-12946642	AT4G25300.1  CDS  gene_syn F24A6.140, F24A6_140  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process flavonoid biosynthetic process|GO:0009813||ISS  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G25310.1); Has 5835 Blast hits to 5806 proteins in 680 species: Archae - 0; Bacteria - 700; Metazoa - 111; Fungi - 623; Plants - 3093; Viruses - 0; Other Eukaryotes - 1308 (source: NCBI BLink).  protein_id AT4G25300.1p  transcript_id AT4G25300.1  protein_id AT4G25300.1p  transcript_id AT4G25300.1  
At4g25300	chr4:012945780	0.0	W/12945780-12946325,12946400-12946642	AT4G25300.2  CDS  gene_syn F24A6.140, F24A6_140  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process flavonoid biosynthetic process|GO:0009813||ISS  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G25310.1); Has 5343 Blast hits to 5332 proteins in 647 species: Archae - 0; Bacteria - 638; Metazoa - 83; Fungi - 514; Plants - 3003; Viruses - 0; Other Eukaryotes - 1105 (source: NCBI BLink).  protein_id AT4G25300.2p  transcript_id AT4G25300.2  protein_id AT4G25300.2p  transcript_id AT4G25300.2  
At4g25310	chr4:012949753	0.0	W/12949753-12950004,12950172-12950410,12950490-12950817,12950896-12951138	AT4G25310.1  CDS  gene_syn F24A6.150, F24A6_150  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process flavonoid biosynthetic process|GO:0009813||ISS  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G25300.1); Has 5829 Blast hits to 5800 proteins in 680 species: Archae - 0; Bacteria - 701; Metazoa - 118; Fungi - 626; Plants - 3085; Viruses - 0; Other Eukaryotes - 1299 (source: NCBI BLink).  protein_id AT4G25310.1p  transcript_id AT4G25310.1  protein_id AT4G25310.1p  transcript_id AT4G25310.1  
At4g25315	chr4:012952750	0.0	C/12952750-12952834,12952396-12952452,12952103-12952221,12951659-12951781	AT4G25315.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Expressed protein  note Expressed protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 13 Blast hits to 13 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G25315.1p  transcript_id AT4G25315.1  protein_id AT4G25315.1p  transcript_id AT4G25315.1  
At4g25320	chr4:012954488	0.0	W/12954488-12954932,12955296-12955381,12955472-12955603,12955715-12955876,12955953-12956342	AT4G25320.1  CDS  gene_syn T30C3.1  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product DNA-binding protein-related  note DNA-binding protein-related; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding, conserved site (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: DNA-binding protein-related (TAIR:AT5G51590.1); Has 418 Blast hits to 416 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 416; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G25320.1p  transcript_id AT4G25320.1  protein_id AT4G25320.1p  transcript_id AT4G25320.1  
At4g25330	chr4:012957834	0.0	W/12957834-12958229,12958309-12958525,12958607-12958683	AT4G25330.1  CDS  gene_syn T30C3.2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 8 Blast hits to 8 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G25330.1p  transcript_id AT4G25330.1  protein_id AT4G25330.1p  transcript_id AT4G25330.1  
At4g25340	chr4:012962620	0.0	C/12962620-12962632,12962462-12962535,12962091-12962338,12961841-12961983,12961267-12961570,12961004-12961171,12960580-12960802,12960120-12960207,12959972-12960013,12959830-12959878,12959657-12959738	AT4G25340.1  CDS  gene_syn T30C3.20, T30C3_20  go_component nucleolus|GO:0005730|15496452|IDA  go_process protein folding|GO:0006457||IEA  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  go_function FK506 binding|GO:0005528||ISS  product immunophilin-related / FKBP-type peptidyl-prolyl cis-trans isomerase-related  note immunophilin-related / FKBP-type peptidyl-prolyl cis-trans isomerase-related; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative (TAIR:AT5G05420.1); Has 31917 Blast hits to 22495 proteins in 1589 species: Archae - 95; Bacteria - 4690; Metazoa - 11105; Fungi - 3414; Plants - 1586; Viruses - 220; Other Eukaryotes - 10807 (source: NCBI BLink).  protein_id AT4G25340.1p  transcript_id AT4G25340.1  protein_id AT4G25340.1p  transcript_id AT4G25340.1  
At4g25350	chr4:012965902	0.0	C/12965902-12966448,12965525-12965811,12965375-12965446,12965175-12965304,12964964-12965084,12964621-12964879,12964425-12964529,12964301-12964345,12963789-12964220,12963562-12963698,12963382-12963484	AT4G25350.1  CDS  gene_syn SHB1, SHORT HYPOCOTYL UNDER BLUE1, T30C3.10, T30C3_10  gene SHB1  function SHB1 encodes a nuclear and cytosolic protein that has motifs homologous with SYG1 protein family members. Acts in cryptochrome signaling. Overexpression of SHB1 enhanced the expression of PHYTOCHROME-INTERACTING FACTOR4 (PIF4) under red light and promoted proteasome-mediated degradation of phytochrome A and hypocotyl elongation under far-red light. A knockout allele suppressed LONG HYPOCOTYL IN FAR-RED LIGHT1 (HFR1) expression and showed several deetiolation phenotypes. Acts upstream of HFR1. Regulates seed development.  go_component nucleus|GO:0005634|16500988|IDA  go_component cytosol|GO:0005829|16500988|IDA  go_component integral to membrane|GO:0016021||ISS  go_process endosperm development|GO:0009960|19141706|IMP  go_process red or far red light signaling pathway|GO:0010017|16500988|IMP  go_process regulation of gene expression|GO:0010468|19141706|IMP  go_process positive regulation of cell size|GO:0045793|19141706|IMP  go_process regulation of seed development|GO:0080050|19141706|IMP  go_process regulation of seed growth|GO:0080113|19141706|IMP  go_function molecular_function|GO:0003674||ND  product SHB1 (SHORT HYPOCOTYL UNDER BLUE1)  note SHORT HYPOCOTYL UNDER BLUE1 (SHB1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 6 processes; LOCATED IN: cytosol, integral to membrane, nucleus; EXPRESSED IN: embryo, flower, root, endosperm; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: EXS, C-terminal (InterPro:IPR004342), SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G35350.1); Has 768 Blast hits to 739 proteins in 144 species: Archae - 0; Bacteria - 2; Metazoa - 244; Fungi - 287; Plants - 119; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT4G25350.1p  transcript_id AT4G25350.1  protein_id AT4G25350.1p  transcript_id AT4G25350.1  
At4g25360	chr4:012970187	0.0	W/12970187-12970706,12971214-12971488,12971598-12972404	AT4G25360.1  CDS  gene_syn T30C3.30, T30C3_30  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: YLS7 (TAIR:AT5G51640.1); Has 699 Blast hits to 688 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 699; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G25360.1p  transcript_id AT4G25360.1  protein_id AT4G25360.1p  transcript_id AT4G25360.1  
At4g25360	chr4:012970187	0.0	W/12970187-12970706,12971214-12971488,12971598-12972404	AT4G25360.2  CDS  gene_syn T30C3.30, T30C3_30  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: YLS7 (TAIR:AT5G51640.1); Has 699 Blast hits to 688 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 699; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G25360.2p  transcript_id AT4G25360.2  protein_id AT4G25360.2p  transcript_id AT4G25360.2  
At4g25370	chr4:012972747	0.0	W/12972747-12972964,12973068-12973103,12973197-12973306,12974056-12974235,12974329-12974456,12974536-12974580	AT4G25370.1  CDS  gene_syn T30C3.40, T30C3_40  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastid stroma|GO:0009532|14593120|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process protein metabolic process|GO:0019538||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||ISS  product Clp amino terminal domain-containing protein  note Clp amino terminal domain-containing protein; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: protein metabolic process; LOCATED IN: thylakoid, plastid stroma, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Clp amino terminal domain-containing protein (TAIR:AT4G12060.1); Has 1552 Blast hits to 1379 proteins in 369 species: Archae - 0; Bacteria - 1010; Metazoa - 0; Fungi - 0; Plants - 83; Viruses - 2; Other Eukaryotes - 457 (source: NCBI BLink).  protein_id AT4G25370.1p  transcript_id AT4G25370.1  protein_id AT4G25370.1p  transcript_id AT4G25370.1  
At4g25380	chr4:012975936	0.0	C/12975936-12976328	AT4G25380.1  CDS  gene_syn T30C3.50, T30C3_50  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product zinc finger (AN1-like) family protein  note zinc finger (AN1-like) family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: zinc finger (AN1-like) family protein (TAIR:AT4G22820.2); Has 822 Blast hits to 749 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 440; Fungi - 2; Plants - 267; Viruses - 6; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT4G25380.1p  transcript_id AT4G25380.1  protein_id AT4G25380.1p  transcript_id AT4G25380.1  
At4g25386	chr4:012977004	0.0	C/12977004-12977138	AT4G25386.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G25386.1p  transcript_id AT4G25386.1  protein_id AT4G25386.1p  transcript_id AT4G25386.1  
At4g25390	chr4:012977491	0.0	W/12977491-12978883,12979346-12979446	AT4G25390.2  CDS  gene_syn T30C3.60, T30C3_60  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G51770.1); Has 52380 Blast hits to 52059 proteins in 1534 species: Archae - 19; Bacteria - 4120; Metazoa - 21883; Fungi - 3372; Plants - 15823; Viruses - 163; Other Eukaryotes - 7000 (source: NCBI BLink).  protein_id AT4G25390.2p  transcript_id AT4G25390.2  protein_id AT4G25390.2p  transcript_id AT4G25390.2  
At4g25390	chr4:012977491	0.0	W/12977491-12979446	AT4G25390.1  CDS  gene_syn T30C3.60, T30C3_60  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G51770.1); Has 62019 Blast hits to 52421 proteins in 1538 species: Archae - 19; Bacteria - 4146; Metazoa - 22140; Fungi - 3414; Plants - 25096; Viruses - 163; Other Eukaryotes - 7041 (source: NCBI BLink).  protein_id AT4G25390.1p  transcript_id AT4G25390.1  protein_id AT4G25390.1p  transcript_id AT4G25390.1  
At4g25400	chr4:012981295	0.0	W/12981295-12981396,12981588-12981914,12982273-12982335	AT4G25400.1  CDS  gene_syn T30C3.70, T30C3_70  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basix helix-loop-helix (bHLH) family protein  note basix helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basix helix-loop-helix (bHLH) family protein (TAIR:AT5G51780.1); Has 87 Blast hits to 86 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G25400.1p  transcript_id AT4G25400.1  protein_id AT4G25400.1p  transcript_id AT4G25400.1  
At4g25410	chr4:012985772	0.0	W/12985772-12985996,12986159-12986518,12986603-12986676,12987116-12987149	AT4G25410.1  CDS  gene_syn T30C3.80, T30C3_80  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product DNA binding / transcription factor  note DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basix helix-loop-helix (bHLH) family protein (TAIR:AT5G51790.1); Has 174 Blast hits to 173 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 5; Plants - 165; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G25410.1p  transcript_id AT4G25410.1  protein_id AT4G25410.1p  transcript_id AT4G25410.1  
At4g25420	chr4:012991859	0.0	C/12991859-12992409,12991346-12991667,12990982-12991242	AT4G25420.1  CDS  gene_syn ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, AT2301, ATGA20OX1, GA REQUIRING 5, GA20OX1, GA5, GIBBERELLIN 20-OXIDASE, T30C3.90, T30C3_90  gene GA20OX1  function Encodes gibberellin 20-oxidase that is involved in the later steps of the gibberellin biosynthetic pathway. Regulated by a circadian clock. Weak expression response to far red light.  go_component cytoplasm|GO:0005737|10330476|TAS  go_process circadian rhythm|GO:0007623|15923331|IEP  go_process gibberellin biosynthetic process|GO:0009686|15923331|TAS  go_process gibberellin biosynthetic process|GO:0009686|7630935|IDA  go_process response to gibberellin stimulus|GO:0009739|7604047|IEP  go_process gibberellic acid mediated signaling|GO:0009740|10330476|TAS  go_process unidimensional cell growth|GO:0009826|18069939|IGI  go_process flower development|GO:0009908|18069939|IGI  go_process short-day photoperiodism, flowering|GO:0048575|7604047|IEP  go_function gibberellin 20-oxidase activity|GO:0045544|10330476|TAS  go_function gibberellin 20-oxidase activity|GO:0045544|15923331|TAS  go_function gibberellin 20-oxidase activity|GO:0045544|7604047|IDA  go_function gibberellin 20-oxidase activity|GO:0045544|7630935|IDA  product GA20OX1; gibberellin 20-oxidase  note GA20OX1; FUNCTIONS IN: gibberellin 20-oxidase activity; INVOLVED IN: in 7 processes; LOCATED IN: cytoplasm; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: GA20OX2 (GIBBERELLIN 20 OXIDASE 2); gibberellin 20-oxidase (TAIR:AT5G51810.1); Has 5908 Blast hits to 5878 proteins in 681 species: Archae - 0; Bacteria - 699; Metazoa - 132; Fungi - 630; Plants - 3084; Viruses - 0; Other Eukaryotes - 1363 (source: NCBI BLink).  protein_id AT4G25420.1p  transcript_id AT4G25420.1  protein_id AT4G25420.1p  transcript_id AT4G25420.1  
At4g25430	chr4:012998571	0.0	W/12998571-12998757,12998850-12998941,12999018-12999800,12999894-13000211	AT4G25430.1  CDS  gene_syn T30C3.7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G51850.1); Has 70 Blast hits to 69 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 2; Plants - 25; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT4G25430.1p  transcript_id AT4G25430.1  protein_id AT4G25430.1p  transcript_id AT4G25430.1  
At4g25433	chr4:013001463	0.0	C/13001463-13001795	AT4G25433.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process cell wall macromolecule catabolic process|GO:0016998||IEA  go_process cell wall macromolecule catabolic process|GO:0016998||ISS  go_function molecular_function|GO:0003674||ND  product peptidoglycan-binding LysM domain-containing protein  note peptidoglycan-binding LysM domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392); BEST Arabidopsis thaliana protein match is: peptidoglycan-binding LysM domain-containing protein (TAIR:AT5G62150.1); Has 30 Blast hits to 30 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G25433.1p  transcript_id AT4G25433.1  protein_id AT4G25433.1p  transcript_id AT4G25433.1  
At4g25434	chr4:013005601	0.0	C/13005601-13005771,13005441-13005506,13005007-13005144,13004793-13004855,13004532-13004698,13004331-13004439,13004043-13004243	AT4G25434.2  CDS  gene_syn ATNUDT10, Arabidopsis thaliana Nudix hydrolase homolog 10  gene ATNUDT10  go_component cytosol|GO:0005829|15878881|RCA  go_process metabolic process|GO:0008152||ISS  go_function catalytic activity|GO:0003824||ISS  go_function ADP-ribose diphosphatase activity|GO:0047631|15878881|IDA  go_function NAD or NADH binding|GO:0051287|15878881|IDA  product ATNUDT10 (Arabidopsis thaliana Nudix hydrolase homolog 10); ADP-ribose diphosphatase/ NAD or NADH binding / catalytic  note Arabidopsis thaliana Nudix hydrolase homolog 10 (ATNUDT10); FUNCTIONS IN: ADP-ribose diphosphatase activity, NAD or NADH binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), NUDIX hydrolase, core (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2); ADP-ribose diphosphatase/ NAD or NADH binding / hydrolase (TAIR:AT5G47650.1); Has 583 Blast hits to 582 proteins in 108 species: Archae - 4; Bacteria - 92; Metazoa - 116; Fungi - 6; Plants - 91; Viruses - 0; Other Eukaryotes - 274 (source: NCBI BLink).  protein_id AT4G25434.2p  transcript_id AT4G25434.2  protein_id AT4G25434.2p  transcript_id AT4G25434.2  
At4g25434	chr4:013005601	0.0	C/13005601-13005771,13005441-13005506,13005007-13005144,13004793-13004855,13004648-13004698,13004532-13004566,13004331-13004439,13004043-13004243	AT4G25434.1  CDS  gene_syn ATNUDT10, Arabidopsis thaliana Nudix hydrolase homolog 10  gene ATNUDT10  go_process metabolic process|GO:0008152||ISS  go_function catalytic activity|GO:0003824||ISS  go_function ADP-ribose diphosphatase activity|GO:0047631|15878881|IDA  go_function NAD or NADH binding|GO:0051287|15878881|IDA  product ATNUDT10 (Arabidopsis thaliana Nudix hydrolase homolog 10); ADP-ribose diphosphatase/ NAD or NADH binding / catalytic  note Arabidopsis thaliana Nudix hydrolase homolog 10 (ATNUDT10); FUNCTIONS IN: ADP-ribose diphosphatase activity, NAD or NADH binding, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), Anti-sense to fibroblast growth factor protein GFG (InterPro:IPR003293), NUDIX hydrolase, core (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2); ADP-ribose diphosphatase/ NAD or NADH binding / hydrolase (TAIR:AT5G47650.1); Has 1179 Blast hits to 1179 proteins in 317 species: Archae - 22; Bacteria - 556; Metazoa - 147; Fungi - 5; Plants - 92; Viruses - 0; Other Eukaryotes - 357 (source: NCBI BLink).  protein_id AT4G25434.1p  transcript_id AT4G25434.1  protein_id AT4G25434.1p  transcript_id AT4G25434.1  
At4g25435	chr4:013006234	0.0	C/13006234-13006306	AT4G25435.1  tRNA  gene_syn 67154.TRNA-LYS-1, 68201.TRNA-LYS-1, AT4G25436  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Lys (anticodon: CTT)  transcript_id AT4G25435.1  
At4g25440	chr4:013008947	0.0	C/13008947-13009381,13008751-13008846,13008491-13008580,13008254-13008355,13007908-13008054,13007669-13007788,13007522-13007581,13007334-13007431,13007107-13007251	AT4G25440.1  CDS  gene_syn T30C3.6, ZFWD1, zinc finger WD40 repeat protein 1  gene ZFWD1  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product ZFWD1 (zinc finger WD40 repeat protein 1); nucleic acid binding / zinc ion binding  note zinc finger WD40 repeat protein 1 (ZFWD1); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: xylem; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein / zfwd2 protein (ZFWD2), putative (TAIR:AT5G51980.1); Has 20982 Blast hits to 11831 proteins in 417 species: Archae - 40; Bacteria - 3055; Metazoa - 9003; Fungi - 4181; Plants - 1744; Viruses - 0; Other Eukaryotes - 2959 (source: NCBI BLink).  protein_id AT4G25440.1p  transcript_id AT4G25440.1  protein_id AT4G25440.1p  transcript_id AT4G25440.1  
At4g25450	chr4:013013158	0.0	C/13013158-13013229,13013033-13013056,13012844-13012945,13012559-13012649,13012342-13012442,13012185-13012235,13011949-13012077,13011553-13011615,13011184-13011463,13010932-13011080,13010738-13010827,13010517-13010651,13010373-13010429,13010231-13010287,13009845-13010081	AT4G25450.3  CDS  gene_syn AT4G25460, ATNAP8, T30C3.5  gene ATNAP8  function member of NAP subfamily  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ATNAP8; ATPase, coupled to transmembrane movement of substances / transporter  note ATNAP8; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATTAP2; ATPase, coupled to transmembrane movement of substances / transporter (TAIR:AT5G39040.1); Has 249378 Blast hits to 226665 proteins in 2645 species: Archae - 4429; Bacteria - 166736; Metazoa - 8508; Fungi - 4886; Plants - 2708; Viruses - 14; Other Eukaryotes - 62097 (source: NCBI BLink).  protein_id AT4G25450.3p  transcript_id AT4G25450.3  protein_id AT4G25450.3p  transcript_id AT4G25450.3  
At4g25450	chr4:013013522	0.0	C/13013522-13013912,13013158-13013345,13013033-13013056,13012844-13012945,13012559-13012649,13012342-13012442,13012185-13012235,13011949-13012077,13011553-13011615,13011184-13011463,13010932-13011080,13010738-13010827,13010517-13010651,13010367-13010429	AT4G25450.2  CDS  gene_syn AT4G25460, ATNAP8, T30C3.5  gene ATNAP8  function member of NAP subfamily  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ATNAP8; ATPase, coupled to transmembrane movement of substances / transporter  note ATNAP8; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140); BEST Arabidopsis thaliana protein match is: ATTAP2; ATPase, coupled to transmembrane movement of substances / transporter (TAIR:AT5G39040.1); Has 138819 Blast hits to 134298 proteins in 2303 species: Archae - 2527; Bacteria - 96599; Metazoa - 5796; Fungi - 2595; Plants - 1423; Viruses - 3; Other Eukaryotes - 29876 (source: NCBI BLink).  protein_id AT4G25450.2p  transcript_id AT4G25450.2  protein_id AT4G25450.2p  transcript_id AT4G25450.2  
At4g25450	chr4:013013522	0.0	C/13013522-13013912,13013158-13013345,13013033-13013056,13012844-13012945,13012559-13012649,13012342-13012442,13012185-13012235,13011949-13012077,13011553-13011615,13011184-13011463,13010932-13011080,13010738-13010827,13010517-13010651,13010373-13010429,13010231-13010287,13009845-13010081	AT4G25450.1  CDS  gene_syn AT4G25460, ATNAP8, T30C3.5  gene ATNAP8  function member of NAP subfamily  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ATNAP8; ATPase, coupled to transmembrane movement of substances / transporter  note ATNAP8; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATTAP2; ATPase, coupled to transmembrane movement of substances / transporter (TAIR:AT5G39040.1); Has 249544 Blast hits to 226954 proteins in 2645 species: Archae - 4429; Bacteria - 166744; Metazoa - 8511; Fungi - 4869; Plants - 2693; Viruses - 14; Other Eukaryotes - 62284 (source: NCBI BLink).  protein_id AT4G25450.1p  transcript_id AT4G25450.1  protein_id AT4G25450.1p  transcript_id AT4G25450.1  
At4g25470	chr4:013015436	0.0	C/13015436-13016086	AT4G25470.1  CDS  gene_syn ATCBF2, C-REPEAT/DRE BINDING FACTOR 2, CBF2, DRE/CRT-BINDING PROTEIN, DRE/CRT-BINDING PROTEIN 1C, DREB1C, FREEZING TOLERANCE QTL 4, FTQ4, T30C3.12  gene CBF2  function Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF2). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature, abscisic acid, and circadian rhythm. Overexpressing this gene leads to increased freeze tolerance and induces the expression level of 85 cold-induced genes and reduces the expression level of 8 cold-repressed genes, which constitute the CBF2 regulon. Mutations in CBF2 increases the expression level of CBF1 and CBF3, suggesting that this gene may be involved in a negative regulatory or feedback circuit of the CBF pathway.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process circadian rhythm|GO:0007623|15728337|IEP  go_process response to cold|GO:0009409|16258011|IEP  go_process response to cold|GO:0009409|9735350|TAS  go_process response to cold|GO:0009409|9952441|IEP  go_process cold acclimation|GO:0009631|15356394|IMP  go_process response to abscisic acid stimulus|GO:0009737|15247382|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function transcription activator activity|GO:0016563|9707537|TAS  go_function transcription activator activity|GO:0016563|9952441|ISS  product CBF2 (C-REPEAT/DRE BINDING FACTOR 2); DNA binding / transcription activator/ transcription factor  note C-REPEAT/DRE BINDING FACTOR 2 (CBF2); FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: cold acclimation, response to cold, response to abscisic acid stimulus, regulation of transcription, DNA-dependent, circadian rhythm; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: CBF1 (C-REPEAT/DRE BINDING FACTOR 1); DNA binding / transcription activator/ transcription factor (TAIR:AT4G25490.1); Has 3787 Blast hits to 3705 proteins in 200 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3780; Viruses - 2; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G25470.1p  transcript_id AT4G25470.1  protein_id AT4G25470.1p  transcript_id AT4G25470.1  
At4g25480	chr4:013018353	0.0	C/13018353-13019003	AT4G25480.1  CDS  gene_syn ATCBF3, C-REPEAT BINDING FACTOR 3, CBF3, DEHYDRATION RESPONSE ELEMENT B1A, DREB1A, T30C3.3, TRANSCRIPTIONAL ACTIVATOR CBF3  gene DREB1A  function encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF3). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature and abscisic acid.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process circadian rhythm|GO:0007623|15728337|IEP  go_process response to cold|GO:0009409|10096298|IMP  go_process response to cold|GO:0009409|12164808|IDA  go_process response to cold|GO:0009409|16258011|IEP  go_process response to cold|GO:0009409|9735350|TAS  go_process response to water deprivation|GO:0009414|11158529|IDA  go_process response to water deprivation|GO:0009414|16617101|IMP  go_process cold acclimation|GO:0009631|18093929|IMP  go_process response to abscisic acid stimulus|GO:0009737|15247382|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11158529|IDA  go_function transcription factor activity|GO:0003700||ISS  go_function transcription activator activity|GO:0016563|9707537|TAS  product DREB1A (DEHYDRATION RESPONSE ELEMENT B1A); DNA binding / transcription activator/ transcription factor  note DEHYDRATION RESPONSE ELEMENT B1A (DREB1A); FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: CBF2 (C-REPEAT/DRE BINDING FACTOR 2); DNA binding / transcription activator/ transcription factor (TAIR:AT4G25470.1); Has 3773 Blast hits to 3699 proteins in 200 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3766; Viruses - 2; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G25480.1p  transcript_id AT4G25480.1  protein_id AT4G25480.1p  transcript_id AT4G25480.1  
At4g25490	chr4:013021921	0.0	C/13021921-13022562	AT4G25490.1  CDS  gene_syn ATCBF1, C-REPEAT/DRE BINDING FACTOR 1, CBF1, DRE BINDING PROTEIN 1B, DREB1B, T30C3.11, TRANSCRIPTIONAL ACTIVATOR CBF1  gene CBF1  function Transcriptional activator that binds to the DRE/CRT regulatory element and induces COR (cold-regulated) gene expression increasing plant freezing tolerance. It encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature and abscisic acid.  go_component nucleus|GO:0005634|9023378|IC  go_process circadian rhythm|GO:0007623|15728337|IEP  go_process response to cold|GO:0009409|16258011|IEP  go_process response to cold|GO:0009409|9023378|IMP  go_process response to cold|GO:0009409|9707537|TAS  go_process response to cold|GO:0009409|9735350|TAS  go_process response to water deprivation|GO:0009414|9023378|IEP  go_process cold acclimation|GO:0009631|18093929|IMP  go_process cold acclimation|GO:0009631|9525853|IMP  go_process cold acclimation|GO:0009631|9735350|IEP  go_process response to abscisic acid stimulus|GO:0009737|15247382|IEP  go_function DNA binding|GO:0003677|9023378|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|9023378|IDA  go_function transcription activator activity|GO:0016563|9023378|IGI  go_function transcription activator activity|GO:0016563|9707537|TAS  product CBF1 (C-REPEAT/DRE BINDING FACTOR 1); DNA binding / transcription activator/ transcription factor  note C-REPEAT/DRE BINDING FACTOR 1 (CBF1); FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: cold acclimation, response to water deprivation, response to cold, response to abscisic acid stimulus, circadian rhythm; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: CBF2 (C-REPEAT/DRE BINDING FACTOR 2); DNA binding / transcription activator/ transcription factor (TAIR:AT4G25470.1); Has 3782 Blast hits to 3708 proteins in 200 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3775; Viruses - 2; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G25490.1p  transcript_id AT4G25490.1  protein_id AT4G25490.1p  transcript_id AT4G25490.1  
At4g25500	chr4:013025168	0.0	W/13025168-13025273,13026056-13026168,13026257-13026498,13026572-13027129,13027210-13027243	AT4G25500.1  CDS  gene_syn ARGININE/SERINE-RICH SPLICING FACTOR, AT-SRP40, ATRSP35, ATRSP40, SPLICING FACTOR AT-SRP40, T30C3.9  gene ATRSP35  function encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component spliceosome|GO:0005681|8989882|ISS  go_component nuclear speck|GO:0016607|15133128|IDA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|8989882|ISS  go_process RNA splicing|GO:0008380|16807317|NAS  go_function RNA binding|GO:0003723||ISS  product ATRSP35; RNA binding / nucleic acid binding / nucleotide binding  note ATRSP35; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck, spliceosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: ATRSP41; RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT5G52040.2); Has 12921 Blast hits to 9668 proteins in 431 species: Archae - 10; Bacteria - 508; Metazoa - 8546; Fungi - 1314; Plants - 1339; Viruses - 44; Other Eukaryotes - 1160 (source: NCBI BLink).  protein_id AT4G25500.1p  transcript_id AT4G25500.1  protein_id AT4G25500.1p  transcript_id AT4G25500.1  
At4g25500	chr4:013025850	0.0	W/13025850-13025856,13026056-13026168,13026257-13026498,13026572-13027129,13027210-13027243	AT4G25500.3  CDS  gene_syn ARGININE/SERINE-RICH SPLICING FACTOR, AT-SRP40, ATRSP35, ATRSP40, SPLICING FACTOR AT-SRP40, T30C3.9  gene ATRSP35  function encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component spliceosome|GO:0005681|8989882|ISS  go_component nuclear speck|GO:0016607|15133128|IDA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|8989882|ISS  go_process RNA splicing|GO:0008380|16807317|NAS  go_function RNA binding|GO:0003723||ISS  product ATRSP35; RNA binding / nucleic acid binding / nucleotide binding  note ATRSP35; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck, spliceosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: ATRSP41; RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT5G52040.4); Has 10129 Blast hits to 7620 proteins in 298 species: Archae - 0; Bacteria - 83; Metazoa - 7191; Fungi - 1023; Plants - 990; Viruses - 46; Other Eukaryotes - 796 (source: NCBI BLink).  protein_id AT4G25500.3p  transcript_id AT4G25500.3  protein_id AT4G25500.3p  transcript_id AT4G25500.3  
At4g25500	chr4:013026073	0.0	W/13026073-13026168,13026257-13026498,13026572-13027129,13027210-13027243	AT4G25500.2  CDS  gene_syn ARGININE/SERINE-RICH SPLICING FACTOR, AT-SRP40, ATRSP35, ATRSP40, SPLICING FACTOR AT-SRP40, T30C3.9  gene ATRSP35  function encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component spliceosome|GO:0005681|8989882|ISS  go_component nuclear speck|GO:0016607|15133128|IDA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|8989882|ISS  go_process RNA splicing|GO:0008380|16807317|NAS  go_function RNA binding|GO:0003723||ISS  product ATRSP35; RNA binding / nucleic acid binding / nucleotide binding  note ATRSP35; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck, spliceosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: ATRSP41; RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT5G52040.4); Has 8286 Blast hits to 6392 proteins in 280 species: Archae - 0; Bacteria - 85; Metazoa - 5815; Fungi - 854; Plants - 803; Viruses - 44; Other Eukaryotes - 685 (source: NCBI BLink).  protein_id AT4G25500.2p  transcript_id AT4G25500.2  protein_id AT4G25500.2p  transcript_id AT4G25500.2  
At4g25510	chr4:013027648	0.0	C/13027648-13028036,13027443-13027503	AT4G25510.1  CDS  gene_syn T30C3.8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G25510.1p  transcript_id AT4G25510.1  protein_id AT4G25510.1p  transcript_id AT4G25510.1  
At4g25515	chr4:013028219	0.0	W/13028219-13028749,13028832-13028963,13029129-13029177,13029352-13029566,13029701-13029769,13030031-13030131,13030266-13030359,13030445-13030514,13030667-13031463	AT4G25515.1  CDS  gene_syn SEUSS-LIKE 3, SLK3  gene SLK3  go_function transcription regulator activity|GO:0030528||ISS  product SLK3 (SEUSS-LIKE 3); transcription regulator  note SEUSS-LIKE 3 (SLK3); FUNCTIONS IN: transcription regulator activity; BEST Arabidopsis thaliana protein match is: SLK1 (SEUSS-LIKE 1); transcription regulator (TAIR:AT4G25520.1); Has 4670 Blast hits to 2956 proteins in 161 species: Archae - 0; Bacteria - 38; Metazoa - 1006; Fungi - 265; Plants - 104; Viruses - 5; Other Eukaryotes - 3252 (source: NCBI BLink).  protein_id AT4G25515.1p  transcript_id AT4G25515.1  protein_id AT4G25515.1p  transcript_id AT4G25515.1  
At4g25520	chr4:013035189	0.0	C/13035189-13035803,13034981-13035112,13034767-13034815,13034392-13034606,13034222-13034290,13033860-13033960,13033674-13033767,13033522-13033591,13032450-13033351	AT4G25520.1  CDS  gene_syn M7J2.110, M7J2_110, SEUSS-LIKE 1, SLK1  gene SLK1  go_function transcription regulator activity|GO:0030528||ISS  product SLK1 (SEUSS-LIKE 1); transcription regulator  note SEUSS-LIKE 1 (SLK1); FUNCTIONS IN: transcription regulator activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: SLK3 (SEUSS-LIKE 3); transcription regulator (TAIR:AT4G25515.1); Has 16774 Blast hits to 7715 proteins in 383 species: Archae - 0; Bacteria - 502; Metazoa - 5522; Fungi - 1321; Plants - 618; Viruses - 192; Other Eukaryotes - 8619 (source: NCBI BLink).  protein_id AT4G25520.1p  transcript_id AT4G25520.1  protein_id AT4G25520.1p  transcript_id AT4G25520.1  
At4g25530	chr4:013039312	0.0	W/13039312-13039481,13039603-13039720,13039917-13040501,13040589-13040690,13040785-13040988,13041160-13041331,13041445-13041812,13041901-13042242	AT4G25530.1  CDS  gene_syn FWA, HDG6, HOMEODOMAIN GLABROUS 6, M7J2.100, M7J2_100  gene FWA  function Encodes a homeodomain-containing transcription factor that controls flowering. FWA is silenced in wild type plants and reverse of the imprinted silencing causes a late flowering phenotype. FWA gene contains two tandem repeats around the transcription start site that are necessary and sufficient for silencing via DNA methylation.  go_component nucleus|GO:0005634|14631047|IDA  go_component nucleus|GO:0005634||ISS  go_process genetic imprinting|GO:0006349|16648367|IEP  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process regulation of flower development|GO:0009909|17189287|IEP  go_process positive regulation of flower development|GO:0009911|9401118|IMP  go_process gene silencing by RNA|GO:0031047|17105345|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein binding|GO:0005515|17189287|IPI  go_function protein homodimerization activity|GO:0042803|17189287|IPI  product FWA; DNA binding / protein binding / protein homodimerization/ transcription factor  note FWA; FUNCTIONS IN: protein binding, transcription factor activity, protein homodimerization activity, DNA binding; INVOLVED IN: genetic imprinting, positive regulation of flower development, regulation of transcription, DNA-dependent, gene silencing by RNA, regulation of flower development; LOCATED IN: nucleus; EXPRESSED IN: embryo, endosperm; EXPRESSED DURING: seedling growth, C globular stage; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: HDG7 (HOMEODOMAIN GLABROUS 7); DNA binding / sequence-specific DNA binding / transcription factor (TAIR:AT5G52170.1); Has 3496 Blast hits to 3484 proteins in 275 species: Archae - 0; Bacteria - 0; Metazoa - 2481; Fungi - 35; Plants - 926; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT4G25530.1p  transcript_id AT4G25530.1  protein_id AT4G25530.1p  transcript_id AT4G25530.1  
At4g25540	chr4:013047180	0.0	C/13047180-13048115,13046731-13046922,13046403-13046567,13046216-13046314,13045722-13045973,13044972-13045226,13044680-13044811,13044082-13044342,13043921-13043992,13043679-13043828,13043133-13043594,13042700-13042969	AT4G25540.1  CDS  gene_syn ATMSH3, Arabidopsis homolog of DNA mismatch repair protein MSH3, M7J2.90, M7J2_90, MSH3  gene MSH3  function encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH3 heterodimers bound  insertion-deletion  DNA with three nucleotides (+AAG) or one nucleotide (+T) looped out much better than they bound DNA with a base/base mispair (T/G).  go_process mismatch repair|GO:0006298|10852942|ISS  go_function damaged DNA binding|GO:0003684|10852942|IDA  go_function protein binding|GO:0005515|10852942|IDA  go_function mismatched DNA binding|GO:0030983|10852942|IDA  product MSH3 (Arabidopsis homolog of DNA mismatch repair protein MSH3); damaged DNA binding / mismatched DNA binding / protein binding  note Arabidopsis homolog of DNA mismatch repair protein MSH3 (MSH3); FUNCTIONS IN: damaged DNA binding, protein binding, mismatched DNA binding; INVOLVED IN: mismatch repair; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, clamp (InterPro:IPR007861), DNA mismatch repair protein MutS, connector (InterPro:IPR007860), DNA mismatch repair protein MutS, N-terminal (InterPro:IPR016151), DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS-like, N-terminal (InterPro:IPR007695); BEST Arabidopsis thaliana protein match is: MSH6 (MUTS HOMOLOG 6); damaged DNA binding (TAIR:AT4G02070.1); Has 9048 Blast hits to 8598 proteins in 1529 species: Archae - 85; Bacteria - 5152; Metazoa - 582; Fungi - 554; Plants - 237; Viruses - 3; Other Eukaryotes - 2435 (source: NCBI BLink).  protein_id AT4G25540.1p  transcript_id AT4G25540.1  protein_id AT4G25540.1p  transcript_id AT4G25540.1  
At4g25550	chr4:013048519	0.0	W/13048519-13048637,13049147-13049192,13049850-13049943,13050035-13050108,13050438-13050524,13050608-13050718,13050802-13050873	AT4G25550.1  CDS  gene_syn M7J2.80, M7J2_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515|16282318|IPI  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cleavage and polyadenylation specificity factor, 25 kDa subunit (InterPro:IPR016706); BEST Arabidopsis thaliana protein match is: CFIM-25 (TAIR:AT4G29820.1); Has 291 Blast hits to 289 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 138; Fungi - 53; Plants - 42; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT4G25550.1p  transcript_id AT4G25550.1  protein_id AT4G25550.1p  transcript_id AT4G25550.1  
At4g25560	chr4:013052555	0.0	W/13052555-13052681,13052769-13052898,13052979-13053573	AT4G25560.1  CDS  gene_syn AtMYB18, M7J2.70, M7J2_70, myb domain protein 18  gene AtMYB18  function Member of the R2R3 factor gene family.  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product AtMYB18 (myb domain protein 18); DNA binding / transcription factor  note myb domain protein 18 (AtMYB18); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, response to salicylic acid stimulus; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: AtMYB19 (myb domain protein 19); DNA binding / transcription factor (TAIR:AT5G52260.1); Has 6219 Blast hits to 5747 proteins in 353 species: Archae - 0; Bacteria - 8; Metazoa - 637; Fungi - 266; Plants - 3708; Viruses - 4; Other Eukaryotes - 1596 (source: NCBI BLink).  protein_id AT4G25560.1p  transcript_id AT4G25560.1  protein_id AT4G25560.1p  transcript_id AT4G25560.1  
At4g25570	chr4:013055375	0.0	C/13055375-13055518,13054846-13054894,13054522-13054721,13053887-13054213	AT4G25570.1  CDS  gene_syn ACYB-2, M7J2.60, M7J2_60  gene ACYB-2  function Encodes cytochrome b561.  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component integral to membrane|GO:0016021||ISS  go_function carbon-monoxide oxygenase activity|GO:0008805||ISS  product ACYB-2; carbon-monoxide oxygenase  note ACYB-2; FUNCTIONS IN: carbon-monoxide oxygenase activity; LOCATED IN: integral to membrane, chloroplast, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b561, eukaryote (InterPro:IPR004877), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593); BEST Arabidopsis thaliana protein match is: ACYB-1; carbon-monoxide oxygenase (TAIR:AT5G38630.1); Has 455 Blast hits to 455 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 335; Fungi - 7; Plants - 102; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT4G25570.1p  transcript_id AT4G25570.1  protein_id AT4G25570.1p  transcript_id AT4G25570.1  
At4g25580	chr4:013056320	0.0	W/13056320-13056395,13056514-13056717,13056797-13057189,13057293-13057460,13057535-13058479,13058563-13058657	AT4G25580.1  CDS  gene_syn M7J2.50, M7J2_50  go_component cellular_component|GO:0005575||ND  product stress-responsive protein-related  note stress-responsive protein-related; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: CAP160 (InterPro:IPR012418); BEST Arabidopsis thaliana protein match is: LTI65 (LOW-TEMPERATURE-INDUCED 65) (TAIR:AT5G52300.2); Has 231 Blast hits to 195 proteins in 64 species: Archae - 0; Bacteria - 20; Metazoa - 63; Fungi - 26; Plants - 81; Viruses - 6; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT4G25580.1p  transcript_id AT4G25580.1  protein_id AT4G25580.1p  transcript_id AT4G25580.1  
At4g25585	chr4:013058832	0.0	C/13058832-13058913	AT4G25585.1  tRNA  gene_syn 68201.TRNA-SER-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: TGA)  transcript_id AT4G25585.1  
At4g25590	chr4:013060048	0.0	C/13060048-13060050,13059388-13059647,13059137-13059287	AT4G25590.1  CDS  gene_syn ADF7, M7J2.40, M7J2_40, actin depolymerizing factor 7  gene ADF7  go_component intracellular|GO:0005622||IEA  go_function actin binding|GO:0003779||IEA  go_component intracellular|GO:0005622||ISS  go_process biological_process|GO:0008150||ND  product ADF7 (actin depolymerizing factor 7); actin binding  note actin depolymerizing factor 7 (ADF7); FUNCTIONS IN: actin binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Actin-binding, cofilin/tropomyosin type (InterPro:IPR002108); BEST Arabidopsis thaliana protein match is: ADF10 (ACTIN DEPOLYMERIZING FACTOR 10); actin binding (TAIR:AT5G52360.1); Has 1068 Blast hits to 1065 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 527; Fungi - 99; Plants - 307; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).  protein_id AT4G25590.1p  transcript_id AT4G25590.1  protein_id AT4G25590.1p  transcript_id AT4G25590.1  
At4g25600	chr4:013060712	0.0	W/13060712-13060791,13060912-13061031,13061146-13061203,13061281-13061334,13061592-13061649,13061768-13061940,13062027-13062359	AT4G25600.1  CDS  gene_syn M7J2.30, M7J2_30  go_process protein metabolic process|GO:0019538||IEA  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||IEA  product ShTK domain-containing protein  note ShTK domain-containing protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, iron ion binding; INVOLVED IN: protein metabolic process; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), Metridin-like ShK toxin (InterPro:IPR003582); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT3G28490.1); Has 799 Blast hits to 781 proteins in 132 species: Archae - 0; Bacteria - 124; Metazoa - 400; Fungi - 0; Plants - 207; Viruses - 6; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT4G25600.1p  transcript_id AT4G25600.1  protein_id AT4G25600.1p  transcript_id AT4G25600.1  
At4g25610	chr4:013063801	0.0	W/13063801-13063945,13064168-13064295,13064402-13064446,13064533-13064586,13065064-13065168,13065270-13065473,13065597-13065682,13065774-13066588,13066682-13066860	AT4G25610.1  CDS  gene_syn M7J2.20, M7J2_20  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); Has 1036 Blast hits to 959 proteins in 162 species: Archae - 0; Bacteria - 74; Metazoa - 379; Fungi - 111; Plants - 53; Viruses - 2; Other Eukaryotes - 417 (source: NCBI BLink).  protein_id AT4G25610.1p  transcript_id AT4G25610.1  protein_id AT4G25610.1p  transcript_id AT4G25610.1  
At4g25610	chr4:013063801	0.0	W/13063801-13063945,13064168-13064295,13064402-13064446,13064533-13064586,13065064-13065168,13065270-13065473,13065597-13065682,13065774-13066588,13066693-13066763,13066819-13066827,13066917-13066970	AT4G25610.2  CDS  gene_syn M7J2.20, M7J2_20  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087).  protein_id AT4G25610.2p  transcript_id AT4G25610.2  protein_id AT4G25610.2p  transcript_id AT4G25610.2  
At4g25620	chr4:013069201	0.0	C/13069201-13069296,13067447-13068700	AT4G25620.1  CDS  gene_syn M7J2.10, M7J2_10  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G52430.1); Has 844 Blast hits to 627 proteins in 148 species: Archae - 0; Bacteria - 72; Metazoa - 151; Fungi - 122; Plants - 173; Viruses - 60; Other Eukaryotes - 266 (source: NCBI BLink).  protein_id AT4G25620.1p  transcript_id AT4G25620.1  protein_id AT4G25620.1p  transcript_id AT4G25620.1  
At4g25630	chr4:013074239	0.0	W/13074239-13074257,13074500-13074840,13074934-13075029,13075114-13075191,13075279-13075455,13075870-13075938,13076023-13076205	AT4G25630.1  CDS  gene_syn ATFIB2, FIB2, FIBRILLARIN 2, L73G19.10, L73G19_10  gene FIB2  function encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2 -O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.2f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated.  go_component nucleolus|GO:0005730|15496452|IDA  go_component nucleolus|GO:0005730|10829025|IDA  go_component nucleolus|GO:0005730|10829025|IMP  go_process RNA methylation|GO:0001510|10829025|IGI  go_process rRNA processing|GO:0006364|10829025|IGI  go_process response to salt stress|GO:0009651|11351099|IEP  go_function snoRNA binding|GO:0030515|10829025|ISS  product FIB2 (FIBRILLARIN 2); snoRNA binding  note FIBRILLARIN 2 (FIB2); FUNCTIONS IN: snoRNA binding; INVOLVED IN: response to salt stress, RNA methylation, rRNA processing; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fibrillarin (InterPro:IPR000692); BEST Arabidopsis thaliana protein match is: FIB1 (FIBRILLARIN 1); snoRNA binding (TAIR:AT5G52470.1); Has 68720 Blast hits to 17115 proteins in 1241 species: Archae - 203; Bacteria - 26461; Metazoa - 22268; Fungi - 3693; Plants - 7251; Viruses - 798; Other Eukaryotes - 8046 (source: NCBI BLink).  protein_id AT4G25630.1p  transcript_id AT4G25630.1  protein_id AT4G25630.1p  transcript_id AT4G25630.1  
At4g25631	chr4:013075563	0.0	W/13075563-13075635	AT4G25631.1  snoRNA  gene_syn U60.2F  gene U60.2F  function Encodes a novel C/D box snoRNA (U60.2f) encoded within the 5th intron of FIB2. Gb: AF228365  go_component box C/D snoRNP complex|GO:0031428||TAS  go_process rRNA methylation|GO:0031167||TAS  go_function molecular_function|GO:0003674||ND  product U60.2F; snoRNA  transcript_id AT4G25631.1  
At4g25635	chr4:013076574	0.0	C/13076574-13076657	AT4G25635.1  tRNA  gene_syn 67156.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: CAA)  transcript_id AT4G25635.1  
At4g25640	chr4:013078699	0.0	C/13078699-13078965,13077938-13078563,13077790-13077846,13077475-13077713,13077270-13077388,13077109-13077195,13076953-13077024	AT4G25640.1  CDS  gene_syn L73G19.20, L73G19_20  go_component plasma membrane|GO:0005886|17151019|IDA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020|11152613|ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT4G00350.1); Has 6264 Blast hits to 6186 proteins in 1132 species: Archae - 126; Bacteria - 4345; Metazoa - 122; Fungi - 208; Plants - 717; Viruses - 0; Other Eukaryotes - 746 (source: NCBI BLink).  protein_id AT4G25640.1p  transcript_id AT4G25640.1  protein_id AT4G25640.1p  transcript_id AT4G25640.1  
At4g25650	chr4:013082638	0.0	C/13082638-13083153,13082327-13082514,13081906-13082245,13081635-13081823,13081351-13081541,13081021-13081276	AT4G25650.2  CDS  gene_syn ACD1-LIKE, L73G19.30, L73G19_30  gene ACD1-LIKE  function Similar to ACD1. Leaves of antisense ACD1-like plants turn yellow in darkness like wild-type whereas antisense ACD1 plants remain dark after five days of dark treatment.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_process oxidation reduction|GO:0055114||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function 2 iron, 2 sulfur cluster binding|GO:0051537||IEA  go_function electron carrier activity|GO:0009055||ISS  product ACD1-LIKE (ACD1-LIKE); 2 iron, 2 sulfur cluster binding / electron carrier/ oxidoreductase  note ACD1-LIKE (ACD1-LIKE); FUNCTIONS IN: electron carrier activity, oxidoreductase activity, 2 iron, 2 sulfur cluster binding; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rieske [2Fe-2S] iron-sulphur domain (InterPro:IPR017941), Rieske [2Fe-2S] region (InterPro:IPR005806), Pheophorbide a oxygenase (InterPro:IPR013626); BEST Arabidopsis thaliana protein match is: ACD1 (ACCELERATED CELL DEATH 1); iron-sulfur cluster binding / pheophorbide a oxygenase (TAIR:AT3G44880.1); Has 2500 Blast hits to 2497 proteins in 397 species: Archae - 4; Bacteria - 1605; Metazoa - 16; Fungi - 3; Plants - 273; Viruses - 0; Other Eukaryotes - 599 (source: NCBI BLink).  protein_id AT4G25650.2p  transcript_id AT4G25650.2  protein_id AT4G25650.2p  transcript_id AT4G25650.2  
At4g25650	chr4:013082638	0.0	C/13082638-13083153,13082327-13082514,13082160-13082245,13081906-13082090,13081635-13081823,13081351-13081541,13081021-13081276	AT4G25650.1  CDS  gene_syn ACD1-LIKE, L73G19.30, L73G19_30  gene ACD1-LIKE  function Similar to ACD1. Leaves of antisense ACD1-like plants turn yellow in darkness like wild-type whereas antisense ACD1 plants remain dark after five days of dark treatment.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_process oxidation reduction|GO:0055114||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function 2 iron, 2 sulfur cluster binding|GO:0051537||IEA  go_function electron carrier activity|GO:0009055||ISS  product ACD1-LIKE (ACD1-LIKE); 2 iron, 2 sulfur cluster binding / electron carrier/ oxidoreductase  note ACD1-LIKE (ACD1-LIKE); FUNCTIONS IN: electron carrier activity, oxidoreductase activity, 2 iron, 2 sulfur cluster binding; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rieske [2Fe-2S] iron-sulphur domain (InterPro:IPR017941), Rieske [2Fe-2S] region (InterPro:IPR005806), Pheophorbide a oxygenase (InterPro:IPR013626); BEST Arabidopsis thaliana protein match is: ACD1 (ACCELERATED CELL DEATH 1); iron-sulfur cluster binding / pheophorbide a oxygenase (TAIR:AT3G44880.1); Has 2494 Blast hits to 2491 proteins in 394 species: Archae - 4; Bacteria - 1607; Metazoa - 14; Fungi - 3; Plants - 273; Viruses - 0; Other Eukaryotes - 593 (source: NCBI BLink).  protein_id AT4G25650.1p  transcript_id AT4G25650.1  protein_id AT4G25650.1p  transcript_id AT4G25650.1  
At4g25660	chr4:013083677	0.0	W/13083677-13083811,13084183-13084444,13084523-13084590,13084687-13084989	AT4G25660.1  CDS  gene_syn L73G19.40, L73G19_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25680.1); Has 499 Blast hits to 499 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 173; Fungi - 37; Plants - 181; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT4G25660.1p  transcript_id AT4G25660.1  protein_id AT4G25660.1p  transcript_id AT4G25660.1  
At4g25670	chr4:013085431	0.0	C/13085431-13085997	AT4G25670.1  CDS  gene_syn L73G19.50, L73G19_50  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25690.2); Has 46 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 38; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G25670.1p  transcript_id AT4G25670.1  protein_id AT4G25670.1p  transcript_id AT4G25670.1  
At4g25672	chr4:013086069	0.0	C/13086069-13086227	AT4G25672.1  CDS  gene_syn CPuORF12, Conserved peptide upstream open reading frame 12  gene CPuORF12  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF12 represents a conserved upstream opening reading frame relative to major ORF AT4G25670.1  product CPuORF12 (Conserved peptide upstream open reading frame 12)  note Conserved peptide upstream open reading frame 12 (CPuORF12); BEST Arabidopsis thaliana protein match is: CPuORF14 (Conserved peptide upstream open reading frame 14) (TAIR:AT5G52552.1); Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G25672.1p  transcript_id AT4G25672.1  protein_id AT4G25672.1p  transcript_id AT4G25672.1  
At4g25680	chr4:013088425	0.0	W/13088425-13088559,13089158-13089419,13089509-13089576,13089659-13089952	AT4G25680.1  CDS  gene_syn L73G19.60, L73G19_60  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25660.1); Has 503 Blast hits to 503 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 175; Fungi - 41; Plants - 181; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).  protein_id AT4G25680.1p  transcript_id AT4G25680.1  protein_id AT4G25680.1p  transcript_id AT4G25680.1  
At4g25690	chr4:013090421	0.0	C/13090421-13090996	AT4G25690.1  CDS  gene_syn L73G19.70, L73G19_70  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25670.1); Has 45 Blast hits to 36 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G25690.1p  transcript_id AT4G25690.1  protein_id AT4G25690.1p  transcript_id AT4G25690.1  
At4g25690	chr4:013090421	0.0	C/13090421-13090996	AT4G25690.2  CDS  gene_syn L73G19.70, L73G19_70  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25670.1); Has 45 Blast hits to 36 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G25690.2p  transcript_id AT4G25690.2  protein_id AT4G25690.2p  transcript_id AT4G25690.2  
At4g25692	chr4:013091072	0.0	C/13091072-13091239	AT4G25692.1  CDS  gene_syn CPuORF13, Conserved peptide upstream open reading frame 13  gene CPuORF13  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF13 represents a conserved upstream opening reading frame relative to major ORF AT4G25690.1  product CPuORF13 (Conserved peptide upstream open reading frame 13)  note Conserved peptide upstream open reading frame 13 (CPuORF13); BEST Arabidopsis thaliana protein match is: CPuORF12 (Conserved peptide upstream open reading frame 12) (TAIR:AT4G25672.1); Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G25692.1p  transcript_id AT4G25692.1  protein_id AT4G25692.1p  transcript_id AT4G25692.1  
At4g25700	chr4:013095489	0.0	C/13095489-13095866,13095350-13095409,13095202-13095273,13094965-13095129	AT4G25700.2  CDS  gene_syn B1, BETA-HYDROXYLASE 1, BETA-OHASE 1, chy1  gene BETA-OHASE 1  function Converts beta-carotene to zeaxanthin via cryptoxanthin.  go_component endoplasmic reticulum|GO:0005783||IEA  go_component chloroplast|GO:0009507||IEA  go_process carotene metabolic process|GO:0016119|8798688|IGI  go_process xanthophyll biosynthetic process|GO:0016123|16890225|IGI  go_function carotene beta-ring hydroxylase activity|GO:0010291|8798688|IGI  go_function carotene beta-ring hydroxylase activity|GO:0010291||ISS  product BETA-OHASE 1 (BETA-HYDROXYLASE 1); carotene beta-ring hydroxylase  note BETA-HYDROXYLASE 1 (BETA-OHASE 1); FUNCTIONS IN: carotene beta-ring hydroxylase activity; INVOLVED IN: xanthophyll biosynthetic process, carotene metabolic process; LOCATED IN: endoplasmic reticulum, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2); carotene beta-ring hydroxylase (TAIR:AT5G52570.1); Has 307 Blast hits to 307 proteins in 104 species: Archae - 8; Bacteria - 74; Metazoa - 0; Fungi - 0; Plants - 146; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT4G25700.2p  transcript_id AT4G25700.2  protein_id AT4G25700.2p  transcript_id AT4G25700.2  
At4g25700	chr4:013095489	0.0	C/13095489-13095866,13095350-13095409,13095202-13095273,13094995-13095129,13094495-13094620,13094333-13094389,13094142-13094246	AT4G25700.1  CDS  gene_syn B1, BETA-HYDROXYLASE 1, BETA-OHASE 1, chy1  gene BETA-OHASE 1  function Converts beta-carotene to zeaxanthin via cryptoxanthin.  go_component endoplasmic reticulum|GO:0005783||IEA  go_component chloroplast|GO:0009507||IEA  go_process carotene metabolic process|GO:0016119|8798688|IGI  go_process xanthophyll biosynthetic process|GO:0016123|16890225|IGI  go_function carotene beta-ring hydroxylase activity|GO:0010291|8798688|IGI  go_function carotene beta-ring hydroxylase activity|GO:0010291||ISS  product BETA-OHASE 1 (BETA-HYDROXYLASE 1); carotene beta-ring hydroxylase  note BETA-HYDROXYLASE 1 (BETA-OHASE 1); FUNCTIONS IN: carotene beta-ring hydroxylase activity; INVOLVED IN: xanthophyll biosynthetic process, carotene metabolic process; LOCATED IN: endoplasmic reticulum, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2); carotene beta-ring hydroxylase (TAIR:AT5G52570.1); Has 441 Blast hits to 441 proteins in 123 species: Archae - 8; Bacteria - 106; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink).  protein_id AT4G25700.1p  transcript_id AT4G25700.1  protein_id AT4G25700.1p  transcript_id AT4G25700.1  
At4g25707	chr4:013097640	0.0	C/13097640-13097762	AT4G25707.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G25707.1p  transcript_id AT4G25707.1  protein_id AT4G25707.1p  transcript_id AT4G25707.1  
At4g25710	chr4:013098359	0.0	C/13098359-13099531	AT4G25710.1  CDS  gene_syn L73G19.90, L73G19_90  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT5G51250.1); Has 594 Blast hits to 581 proteins in 40 species: Archae - 4; Bacteria - 3; Metazoa - 97; Fungi - 0; Plants - 489; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G25710.1p  transcript_id AT4G25710.1  protein_id AT4G25710.1p  transcript_id AT4G25710.1  
At4g25719	chr4:013099788	0.0	W/13099788-13101017	AT4G25719.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT4G25720  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G25719.1  
At4g25720	chr4:013102195	0.0	C/13102195-13102470,13102063-13102119,13101894-13101929,13101597-13101661,13101352-13101415,13100989-13101106,13100786-13100883,13100417-13100487,13100284-13100311,13100104-13100187	AT4G25720.2  CDS  gene_syn ARABIDOPSIS THALIANA GLUTAMINYL CYCLASE, ATQC, GLUTAMINYL CYCLASE, GLUTAMINYL CYCLOTRANSFERASE, L73G19.100, L73G19_100, QC, QCT  gene QC  function This locus encodes a protein with similarity to gamma-glutamylcyclotransferase that may be involved in catalyzing the formation of pyroglutate residue on proteins that have been post-translationally processed to reveal a glutamine at their N-terminus. Enzymatic assays to test the function of this protein were performed using a truncated form of the protein lacking a signal peptide that is most similar to the AT4G25720.1 protein model.  go_process peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase|GO:0017186|17261077|IDA  go_function catalytic activity|GO:0003824||ISS  go_function glutaminyl-peptide cyclotransferase activity|GO:0016603|17261077|IDA  product QC (GLUTAMINYL CYCLASE); catalytic/ glutaminyl-peptide cyclotransferase  note GLUTAMINYL CYCLASE (QC); FUNCTIONS IN: glutaminyl-peptide cyclotransferase activity, catalytic activity; INVOLVED IN: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine cyclotransferase (InterPro:IPR007788), Nitrous oxide reductase, N-terminal (InterPro:IPR011045); Has 514 Blast hits to 514 proteins in 137 species: Archae - 0; Bacteria - 204; Metazoa - 1; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 285 (source: NCBI BLink).  protein_id AT4G25720.2p  transcript_id AT4G25720.2  protein_id AT4G25720.2p  transcript_id AT4G25720.2  
At4g25720	chr4:013102195	0.0	C/13102195-13102470,13102063-13102119,13101894-13101929,13101597-13101661,13101352-13101415,13100989-13101106,13100786-13100883,13100417-13100487,13100284-13100311,13100133-13100187,13099929-13100023	AT4G25720.1  CDS  gene_syn ARABIDOPSIS THALIANA GLUTAMINYL CYCLASE, ATQC, GLUTAMINYL CYCLASE, GLUTAMINYL CYCLOTRANSFERASE, L73G19.100, L73G19_100, QC, QCT  gene QC  function This locus encodes a protein with similarity to gamma-glutamylcyclotransferase that may be involved in catalyzing the formation of pyroglutate residue on proteins that have been post-translationally processed to reveal a glutamine at their N-terminus. Enzymatic assays to test the function of this protein were performed using a truncated form of the protein lacking a signal peptide that is most similar to the AT4G25720.1 protein model.  go_process peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase|GO:0017186|17261077|IDA  go_function catalytic activity|GO:0003824||ISS  go_function glutaminyl-peptide cyclotransferase activity|GO:0016603|17261077|IDA  product QC (GLUTAMINYL CYCLASE); catalytic/ glutaminyl-peptide cyclotransferase  note GLUTAMINYL CYCLASE (QC); FUNCTIONS IN: glutaminyl-peptide cyclotransferase activity, catalytic activity; INVOLVED IN: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine cyclotransferase (InterPro:IPR007788), Nitrous oxide reductase, N-terminal (InterPro:IPR011045); Has 527 Blast hits to 527 proteins in 137 species: Archae - 0; Bacteria - 204; Metazoa - 1; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 298 (source: NCBI BLink).  protein_id AT4G25720.1p  transcript_id AT4G25720.1  protein_id AT4G25720.1p  transcript_id AT4G25720.1  
At4g25720	chr4:013102195	0.0	C/13102195-13102470,13102063-13102119,13101894-13101929,13101597-13101661,13101352-13101415,13100989-13101106,13100846-13100883,13100417-13100487,13100284-13100311,13100133-13100187,13099929-13100023	AT4G25720.3  CDS  gene_syn ARABIDOPSIS THALIANA GLUTAMINYL CYCLASE, ATQC, GLUTAMINYL CYCLASE, GLUTAMINYL CYCLOTRANSFERASE, L73G19.100, L73G19_100, QC, QCT  gene QC  function This locus encodes a protein with similarity to gamma-glutamylcyclotransferase that may be involved in catalyzing the formation of pyroglutate residue on proteins that have been post-translationally processed to reveal a glutamine at their N-terminus. Enzymatic assays to test the function of this protein were performed using a truncated form of the protein lacking a signal peptide that is most similar to the AT4G25720.1 protein model.  go_process peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase|GO:0017186|17261077|IDA  go_function catalytic activity|GO:0003824||ISS  go_function glutaminyl-peptide cyclotransferase activity|GO:0016603|17261077|IDA  product QC (GLUTAMINYL CYCLASE); catalytic/ glutaminyl-peptide cyclotransferase  note GLUTAMINYL CYCLASE (QC); FUNCTIONS IN: glutaminyl-peptide cyclotransferase activity, catalytic activity; INVOLVED IN: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine cyclotransferase (InterPro:IPR007788), Nitrous oxide reductase, N-terminal (InterPro:IPR011045); Has 515 Blast hits to 515 proteins in 134 species: Archae - 0; Bacteria - 204; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 287 (source: NCBI BLink).  protein_id AT4G25720.3p  transcript_id AT4G25720.3  protein_id AT4G25720.3p  transcript_id AT4G25720.3  
At4g25730	chr4:013106245	0.0	C/13106245-13106718,13106074-13106121,13105818-13105976,13105678-13105724,13105451-13105607,13105301-13105362,13104740-13104929,13104534-13104623,13104201-13104340,13103968-13104085,13102906-13103886	AT4G25730.1  CDS  gene_syn F14M19.10, F14M19_10  go_component nucleus|GO:0005634||IEA  go_process rRNA processing|GO:0006364||IEA  go_process rRNA methylation|GO:0031167||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_function methyltransferase activity|GO:0008168||ISS  product FtsJ-like methyltransferase family protein  note FtsJ-like methyltransferase family protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: rRNA processing, rRNA methylation; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Spb1, C-terminal (InterPro:IPR012920), Ribosomal RNA methyltransferase J (InterPro:IPR015507), Ribosomal RNA methyltransferase RrmJ/FtsJ (InterPro:IPR002877); BEST Arabidopsis thaliana protein match is: FtsJ-like methyltransferase family protein (TAIR:AT5G01230.1); Has 26567 Blast hits to 17790 proteins in 1345 species: Archae - 124; Bacteria - 5586; Metazoa - 8358; Fungi - 2488; Plants - 691; Viruses - 228; Other Eukaryotes - 9092 (source: NCBI BLink).  protein_id AT4G25730.1p  transcript_id AT4G25730.1  protein_id AT4G25730.1p  transcript_id AT4G25730.1  
At4g25740	chr4:013108749	0.0	C/13108749-13108751,13108590-13108638,13107926-13108205,13107723-13107843,13107488-13107568	AT4G25740.1  CDS  gene_syn F14M19.20, F14M19_20  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S10 (RPS10A)  note 40S ribosomal protein S10 (RPS10A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plectin/S10, N-terminal (InterPro:IPR005326); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S10 (RPS10C) (TAIR:AT5G52650.1); Has 1958 Blast hits to 1535 proteins in 282 species: Archae - 0; Bacteria - 275; Metazoa - 679; Fungi - 156; Plants - 119; Viruses - 1; Other Eukaryotes - 728 (source: NCBI BLink).  protein_id AT4G25740.1p  transcript_id AT4G25740.1  protein_id AT4G25740.1p  transcript_id AT4G25740.1  
At4g25740	chr4:013108749	0.0	C/13108749-13108751,13108590-13108638,13107948-13108205,13107723-13107781,13107488-13107568	AT4G25740.2  CDS  gene_syn F14M19.20, F14M19_20  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S10 (RPS10A)  note 40S ribosomal protein S10 (RPS10A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plectin/S10, N-terminal (InterPro:IPR005326); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S10 (RPS10C) (TAIR:AT5G52650.1); Has 578 Blast hits to 578 proteins in 197 species: Archae - 0; Bacteria - 11; Metazoa - 290; Fungi - 93; Plants - 85; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).  protein_id AT4G25740.2p  transcript_id AT4G25740.2  protein_id AT4G25740.2p  transcript_id AT4G25740.2  
At4g25750	chr4:013110627	0.0	C/13110627-13112360	AT4G25750.1  CDS  gene_syn F14M19.30, F14M19_30  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ABC transporter family protein  note ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 (InterPro:IPR000412), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT5G52860.1); Has 246289 Blast hits to 221147 proteins in 2722 species: Archae - 4367; Bacteria - 166809; Metazoa - 8608; Fungi - 4976; Plants - 2964; Viruses - 21; Other Eukaryotes - 58544 (source: NCBI BLink).  protein_id AT4G25750.1p  transcript_id AT4G25750.1  protein_id AT4G25750.1p  transcript_id AT4G25750.1  
At4g25760	chr4:013116149	0.0	W/13116149-13116538	AT4G25760.1  CDS  gene_syn Arabidopsis thaliana GLUTAMINE DUMPER 2, AtGDU2, F14M19.40, F14M19_40  gene AtGDU2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product AtGDU2 (Arabidopsis thaliana GLUTAMINE DUMPER 2)  note Arabidopsis thaliana GLUTAMINE DUMPER 2 (AtGDU2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3) (TAIR:AT5G57685.1); Has 63 Blast hits to 63 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G25760.1p  transcript_id AT4G25760.1  protein_id AT4G25760.1p  transcript_id AT4G25760.1  
At4g25770	chr4:013119672	0.0	C/13119672-13119982,13119513-13119580,13119350-13119420,13119032-13119271,13118745-13118908,13118608-13118663,13118458-13118510,13118248-13118371,13117973-13118070,13117821-13117892	AT4G25770.1  CDS  gene_syn F14M19.50, F14M19_50  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF676, hydrolase-like (InterPro:IPR007751); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10040.1); Has 514 Blast hits to 507 proteins in 123 species: Archae - 0; Bacteria - 2; Metazoa - 122; Fungi - 189; Plants - 101; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).  protein_id AT4G25770.1p  transcript_id AT4G25770.1  protein_id AT4G25770.1p  transcript_id AT4G25770.1  
At4g25780	chr4:013121107	0.0	W/13121107-13121679	AT4G25780.1  CDS  gene_syn F14M19.60, F14M19_60  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_component extracellular region|GO:0005576||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pathogenesis-related protein, putative  note pathogenesis-related protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related, conserved site (InterPro:IPR018244), Allergen V5/Tpx-1 related (InterPro:IPR001283), Ves allergen (InterPro:IPR002413), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: allergen V5/Tpx-1-related family protein (TAIR:AT5G57625.1); Has 2260 Blast hits to 2175 proteins in 289 species: Archae - 0; Bacteria - 50; Metazoa - 1347; Fungi - 217; Plants - 590; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT4G25780.1p  transcript_id AT4G25780.1  protein_id AT4G25780.1p  transcript_id AT4G25780.1  
At4g25790	chr4:013123023	0.0	C/13123023-13123290,13122248-13122612	AT4G25790.1  CDS  gene_syn F14M19.70, F14M19_70  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_component extracellular region|GO:0005576||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product allergen V5/Tpx-1-related family protein  note allergen V5/Tpx-1-related family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related, conserved site (InterPro:IPR018244), Allergen V5/Tpx-1 related (InterPro:IPR001283), Ves allergen (InterPro:IPR002413), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: allergen V5/Tpx-1-related family protein (TAIR:AT5G57625.1); Has 2406 Blast hits to 2245 proteins in 306 species: Archae - 2; Bacteria - 59; Metazoa - 1353; Fungi - 223; Plants - 698; Viruses - 8; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT4G25790.1p  transcript_id AT4G25790.1  protein_id AT4G25790.1p  transcript_id AT4G25790.1  
At4g25800	chr4:013125224	0.0	W/13125224-13125288,13125378-13125453,13125566-13125624,13125708-13126207,13126299-13126459,13126554-13126757,13126928-13127114,13127212-13127765	AT4G25800.1  CDS  gene_syn F14M19.80, F14M19_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516|11782485|IEP  go_function calmodulin binding|GO:0005516|11782485|TAS  product calmodulin-binding protein  note calmodulin-binding protein; FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Calmodulin binding protein-like (InterPro:IPR012416); BEST Arabidopsis thaliana protein match is: calmodulin-binding protein (TAIR:AT5G57580.1); Has 192 Blast hits to 185 proteins in 18 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 185; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G25800.1p  transcript_id AT4G25800.1  protein_id AT4G25800.1p  transcript_id AT4G25800.1  
At4g25800	chr4:013125224	0.0	W/13125224-13125288,13125378-13125453,13125566-13125624,13125708-13126207,13126299-13126459,13126554-13126757,13126928-13127114,13127212-13127765	AT4G25800.2  CDS  gene_syn F14M19.80, F14M19_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516|11782485|IEP  go_function calmodulin binding|GO:0005516|11782485|TAS  product calmodulin-binding protein  note calmodulin-binding protein; FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Calmodulin binding protein-like (InterPro:IPR012416); BEST Arabidopsis thaliana protein match is: calmodulin-binding protein (TAIR:AT5G57580.1); Has 192 Blast hits to 185 proteins in 18 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 185; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G25800.2p  transcript_id AT4G25800.2  protein_id AT4G25800.2p  transcript_id AT4G25800.2  
At4g25810	chr4:013128694	0.0	W/13128694-13128963,13129048-13129241,13129319-13129715	AT4G25810.1  CDS  gene_syn F14M19.90, F14M19_90, XTH23, XTR6, XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6  gene XTR6  function xyloglucan endotransglycosylase-related protein (XTR6)  go_component cell wall|GO:0005618|14595688|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process cellular glucan metabolic process|GO:0006073||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762||IEA  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6); hydrolase, acting on glycosyl bonds / hydrolase, hydrolyzing O-glycosyl compounds / xyloglucan:xyloglucosyl transferase  note XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6 (XTR6); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: TCH4 (Touch 4); hydrolase, acting on glycosyl bonds / xyloglucan:xyloglucosyl transferase (TAIR:AT5G57560.1); Has 1424 Blast hits to 1416 proteins in 218 species: Archae - 0; Bacteria - 201; Metazoa - 0; Fungi - 305; Plants - 807; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).  protein_id AT4G25810.1p  transcript_id AT4G25810.1  protein_id AT4G25810.1p  transcript_id AT4G25810.1  
At4g25820	chr4:013130349	0.0	W/13130349-13130630,13130756-13130949,13131228-13131615	AT4G25820.1  CDS  gene_syn F14M19.100, F14M19_100, XTR9, XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9  gene XTR9  function Encodes a xyloglucan endotransglycosylase with a clear preference for non-fucosylated xyloglucan polymer.  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process cellular glucan metabolic process|GO:0006073||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762||IEA  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9); hydrolase, acting on glycosyl bonds / hydrolase, hydrolyzing O-glycosyl compounds / xyloglucan:xyloglucosyl transferase  note XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9 (XTR9); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, apoplast, cell wall; EXPRESSED IN: radicle, root; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative (TAIR:AT5G57540.1); Has 1430 Blast hits to 1422 proteins in 220 species: Archae - 0; Bacteria - 203; Metazoa - 0; Fungi - 306; Plants - 808; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).  protein_id AT4G25820.1p  transcript_id AT4G25820.1  protein_id AT4G25820.1p  transcript_id AT4G25820.1  
At4g25830	chr4:013133727	0.0	W/13133727-13133878,13134338-13134458,13134536-13134790	AT4G25830.1  CDS  gene_syn F14M19.9  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane family protein  note integral membrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT2G35760.1); Has 191 Blast hits to 191 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 191; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G25830.1p  transcript_id AT4G25830.1  protein_id AT4G25830.1p  transcript_id AT4G25830.1  
At4g25835	chr4:013136117	0.0	W/13136117-13137637	AT4G25835.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process biological_process|GO:0008150||ND  go_function ATPase activity|GO:0016887||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT5G57480.1); Has 13162 Blast hits to 12230 proteins in 1599 species: Archae - 679; Bacteria - 3954; Metazoa - 2290; Fungi - 1664; Plants - 1151; Viruses - 24; Other Eukaryotes - 3400 (source: NCBI BLink).  protein_id AT4G25835.1p  transcript_id AT4G25835.1  protein_id AT4G25835.1p  transcript_id AT4G25835.1  
At4g25840	chr4:013139026	0.0	W/13139026-13139275,13139553-13139777,13139969-13140029,13140159-13140306,13140424-13140503,13140587-13140719	AT4G25840.1  CDS  gene_syn F14M19.120, F14M19_120, GPP1, glycerol-3-phosphatase 1  gene GPP1  go_component chloroplast|GO:0009507||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity|GO:0016787||ISS  product GPP1 (glycerol-3-phosphatase 1); catalytic/ hydrolase  note glycerol-3-phosphatase 1 (GPP1); FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: GS1; catalytic/ hydrolase (TAIR:AT5G57440.1); Has 4557 Blast hits to 4531 proteins in 1051 species: Archae - 29; Bacteria - 3417; Metazoa - 263; Fungi - 156; Plants - 137; Viruses - 0; Other Eukaryotes - 555 (source: NCBI BLink).  protein_id AT4G25840.1p  transcript_id AT4G25840.1  protein_id AT4G25840.1p  transcript_id AT4G25840.1  
At4g25845	chr4:013142270	0.0	W/13142270-13142632	AT4G25845.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 19 Blast hits to 19 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G25845.1p  transcript_id AT4G25845.1  protein_id AT4G25845.1p  transcript_id AT4G25845.1  
At4g25850	chr4:013143859	0.0	W/13143859-13143861,13144234-13144386,13145238-13145486,13145574-13145670,13145920-13146217,13146303-13146654	AT4G25850.1  CDS  gene_syn F14M19.130, F14M19_130, ORP4B, OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4B  gene ORP4B  go_process steroid metabolic process|GO:0008202||IEA  go_component cellular_component|GO:0005575||ND  go_process steroid metabolic process|GO:0008202||ISS  go_function oxysterol binding|GO:0008142||ISS  product ORP4B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4B); oxysterol binding  note OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4B (ORP4B); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Oxysterol-binding protein (InterPro:IPR000648); BEST Arabidopsis thaliana protein match is: ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A); oxysterol binding (TAIR:AT4G25860.1); Has 1645 Blast hits to 1644 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 908; Fungi - 430; Plants - 143; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).  protein_id AT4G25850.1p  transcript_id AT4G25850.1  protein_id AT4G25850.1p  transcript_id AT4G25850.1  
At4g25860	chr4:013147357	0.0	W/13147357-13147359,13147455-13147610,13147966-13148214,13148467-13148563,13148782-13149079,13149170-13149527	AT4G25860.1  CDS  gene_syn F14M19.140, F14M19_140, ORP4A, OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A  gene ORP4A  go_process steroid metabolic process|GO:0008202||IEA  go_component cellular_component|GO:0005575||ND  go_process steroid metabolic process|GO:0008202||ISS  go_function oxysterol binding|GO:0008142||ISS  product ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A); oxysterol binding  note OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A (ORP4A); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Oxysterol-binding protein (InterPro:IPR000648); BEST Arabidopsis thaliana protein match is: ORP4B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4B); oxysterol binding (TAIR:AT4G25850.1); Has 1663 Blast hits to 1662 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 911; Fungi - 436; Plants - 126; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink).  protein_id AT4G25860.1p  transcript_id AT4G25860.1  protein_id AT4G25860.1p  transcript_id AT4G25860.1  
At4g25870	chr4:013151375	0.0	C/13151375-13151737,13151096-13151295,13150938-13151009,13150758-13150848,13150553-13150633,13150374-13150436,13150164-13150286,13150045-13150083,13149831-13149968	AT4G25870.1  CDS  gene_syn F14M19.150, F14M19_150  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF266, plant (InterPro:IPR004949); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57270.3); Has 336 Blast hits to 336 proteins in 13 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 306; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT4G25870.1p  transcript_id AT4G25870.1  protein_id AT4G25870.1p  transcript_id AT4G25870.1  
At4g25885	chr4:013154711	0.0	C/13154711-13155033	AT4G25885.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT4G25880  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G25885.1  
At4g25880	chr4:013155518	0.0	W/13155518-13156012,13156110-13157236,13157334-13157475,13157563-13157670,13157747-13157959,13158092-13158202,13158295-13158489,13158572-13158743,13159056-13159078	AT4G25880.1  CDS  gene_syn APUM6, Arabidopsis Pumilio 6, F14M19.160, F14M19_160  gene APUM6  go_component chloroplast|GO:0009507||IEA  go_function RNA binding|GO:0003723||IEA  go_function binding|GO:0005488||IEA  go_function RNA binding|GO:0003723||ISS  product APUM6 (Arabidopsis Pumilio 6); RNA binding / binding  note Arabidopsis Pumilio 6 (APUM6); FUNCTIONS IN: RNA binding, binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding region (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: APUM5 (Arabidopsis Pumilio 5); RNA binding / binding (TAIR:AT3G20250.1); Has 2980 Blast hits to 1446 proteins in 176 species: Archae - 0; Bacteria - 6; Metazoa - 940; Fungi - 833; Plants - 497; Viruses - 0; Other Eukaryotes - 704 (source: NCBI BLink).  protein_id AT4G25880.1p  transcript_id AT4G25880.1  protein_id AT4G25880.1p  transcript_id AT4G25880.1  
At4g25880	chr4:013155518	0.0	W/13155518-13156012,13156110-13157236,13157352-13157475,13157563-13157670,13157747-13157959,13158092-13158202,13158295-13158489,13158572-13158743,13159056-13159078	AT4G25880.2  CDS  gene_syn APUM6, Arabidopsis Pumilio 6, F14M19.160, F14M19_160  gene APUM6  go_component chloroplast|GO:0009507||IEA  go_function RNA binding|GO:0003723||IEA  go_function binding|GO:0005488||IEA  go_function RNA binding|GO:0003723||ISS  product APUM6 (Arabidopsis Pumilio 6); RNA binding / binding  note Arabidopsis Pumilio 6 (APUM6); FUNCTIONS IN: RNA binding, binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding region (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: APUM5 (Arabidopsis Pumilio 5); RNA binding / binding (TAIR:AT3G20250.1); Has 2708 Blast hits to 1441 proteins in 176 species: Archae - 0; Bacteria - 6; Metazoa - 808; Fungi - 787; Plants - 448; Viruses - 0; Other Eukaryotes - 659 (source: NCBI BLink).  protein_id AT4G25880.2p  transcript_id AT4G25880.2  protein_id AT4G25880.2p  transcript_id AT4G25880.2  
At4g25880	chr4:013155518	0.0	W/13155518-13156012,13156110-13157236,13157352-13157475,13157563-13157670,13157747-13157959,13158092-13158202,13158295-13158489,13158572-13158760,13159056-13159070	AT4G25880.3  CDS  gene_syn APUM6, Arabidopsis Pumilio 6, F14M19.160, F14M19_160  gene APUM6  go_component chloroplast|GO:0009507||IEA  go_function RNA binding|GO:0003723||IEA  go_function binding|GO:0005488||IEA  go_function RNA binding|GO:0003723||ISS  product APUM6 (Arabidopsis Pumilio 6); RNA binding / binding  note Arabidopsis Pumilio 6 (APUM6); FUNCTIONS IN: RNA binding, binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding region (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: APUM5 (Arabidopsis Pumilio 5); RNA binding / binding (TAIR:AT3G20250.1); Has 2762 Blast hits to 1440 proteins in 176 species: Archae - 0; Bacteria - 6; Metazoa - 881; Fungi - 804; Plants - 412; Viruses - 0; Other Eukaryotes - 659 (source: NCBI BLink).  protein_id AT4G25880.3p  transcript_id AT4G25880.3  protein_id AT4G25880.3p  transcript_id AT4G25880.3  
At4g25890	chr4:013160196	0.0	C/13160196-13160393,13159627-13159788	AT4G25890.1  CDS  gene_syn F14M19.170, F14M19_170  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_process translational elongation|GO:0006414||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic ribosome|GO:0022626|17934214|IDA  go_process translational elongation|GO:0006414||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S acidic ribosomal protein P3 (RPP3A)  note 60S acidic ribosomal protein P3 (RPP3A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosolic ribosome, ribosome, nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P3 (RPP3B) (TAIR:AT5G57290.2); Has 578 Blast hits to 577 proteins in 136 species: Archae - 0; Bacteria - 6; Metazoa - 262; Fungi - 76; Plants - 177; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT4G25890.1p  transcript_id AT4G25890.1  protein_id AT4G25890.1p  transcript_id AT4G25890.1  
At4g25900	chr4:013161487	0.0	W/13161487-13161648,13161768-13161842,13162189-13162245,13162329-13162483,13162602-13162736,13162828-13162930,13163019-13163118,13163228-13163397	AT4G25900.1  CDS  gene_syn F14M19.180, F14M19_180  go_component cell wall|GO:0005618|14595688|IDA  go_component cell wall|GO:0005618|15593128|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function isomerase activity|GO:0016853||IEA  go_function carbohydrate binding|GO:0030246||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_process galactose metabolic process|GO:0006012||ISS  go_function aldose 1-epimerase activity|GO:0004034||ISS  product aldose 1-epimerase family protein  note aldose 1-epimerase family protein; FUNCTIONS IN: carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity; INVOLVED IN: galactose metabolic process, carbohydrate metabolic process; LOCATED IN: cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Aldose 1-epimerase (InterPro:IPR008183), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718); BEST Arabidopsis thaliana protein match is: aldose 1-epimerase family protein (TAIR:AT5G57330.1); Has 1272 Blast hits to 1271 proteins in 506 species: Archae - 0; Bacteria - 841; Metazoa - 38; Fungi - 84; Plants - 141; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).  protein_id AT4G25900.1p  transcript_id AT4G25900.1  protein_id AT4G25900.1p  transcript_id AT4G25900.1  
At4g25910	chr4:013164128	0.0	W/13164128-13164229,13164315-13164432,13164508-13164806,13164903-13165094	AT4G25910.1  CDS  gene_syn AtCNFU3, F20B18.20, F20B18_20, NFU3  gene NFU3  function Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU1 and 2 than to NFU4 and 5. Targeted to the chloroplast.  go_component chloroplast|GO:0009507|12553879|IDA  go_component chloroplast|GO:0009507|15031412|ISS  go_process chloroplast organization|GO:0009658|15031412|ISS  go_process iron-sulfur cluster assembly|GO:0016226|12553879|IGI  go_process iron-sulfur cluster assembly|GO:0016226|15031412|ISS  go_function structural molecule activity|GO:0005198|12553879|TAS  product NFU3; structural molecule  note NFU3; FUNCTIONS IN: structural molecule activity; INVOLVED IN: iron-sulfur cluster assembly, chloroplast organization; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NIF system FeS cluster assembly, NifU, C-terminal (InterPro:IPR001075); BEST Arabidopsis thaliana protein match is: NFU2 (NIFU-LIKE PROTEIN 2); structural molecule (TAIR:AT5G49940.1); Has 4261 Blast hits to 3986 proteins in 883 species: Archae - 8; Bacteria - 1791; Metazoa - 127; Fungi - 101; Plants - 112; Viruses - 4; Other Eukaryotes - 2118 (source: NCBI BLink).  protein_id AT4G25910.1p  transcript_id AT4G25910.1  protein_id AT4G25910.1p  transcript_id AT4G25910.1  
At4g25920	chr4:013165475	0.0	W/13165475-13165531,13165614-13166368,13166481-13166841	AT4G25920.1  CDS  gene_syn F20B18.30, F20B18_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14260.1); Has 144 Blast hits to 142 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G25920.1p  transcript_id AT4G25920.1  protein_id AT4G25920.1p  transcript_id AT4G25920.1  
At4g25930	chr4:013168127	0.0	W/13168127-13168180,13168268-13168995,13169072-13169393	AT4G25930.1  CDS  gene_syn F20B18.40, F20B18_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25920.1); Has 133 Blast hits to 131 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G25930.1p  transcript_id AT4G25930.1  protein_id AT4G25930.1p  transcript_id AT4G25930.1  
At4g25940	chr4:013172611	0.0	C/13172611-13172700,13172449-13172518,13172274-13172371,13172044-13172182,13171820-13171947,13171630-13171743,13171438-13171554,13171284-13171349,13171129-13171209,13170976-13171053,13170671-13170874,13170514-13170589,13170299-13170432,13169792-13170202	AT4G25940.1  CDS  gene_syn F20B18.50, F20B18_50  go_component clathrin coat|GO:0030118||IEA  go_process clathrin coat assembly|GO:0048268||IEA  go_function phospholipid binding|GO:0005543||IEA  go_function phosphatidylinositol binding|GO:0005545||IEA  go_function clathrin binding|GO:0030276||IEA  go_function binding|GO:0005488||ISS  product epsin N-terminal homology (ENTH) domain-containing protein  note epsin N-terminal homology (ENTH) domain-containing protein; FUNCTIONS IN: phospholipid binding, clathrin binding, binding, phosphatidylinositol binding; INVOLVED IN: clathrin coat assembly; LOCATED IN: clathrin coat; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942), Clathrin adaptor, phosphoinositide-binding, GAT-like (InterPro:IPR014712); BEST Arabidopsis thaliana protein match is: epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (TAIR:AT5G57200.1); Has 11104 Blast hits to 4070 proteins in 260 species: Archae - 25; Bacteria - 212; Metazoa - 6916; Fungi - 563; Plants - 384; Viruses - 323; Other Eukaryotes - 2681 (source: NCBI BLink).  protein_id AT4G25940.1p  transcript_id AT4G25940.1  protein_id AT4G25940.1p  transcript_id AT4G25940.1  
At4g25950	chr4:013174237	0.0	C/13174237-13174324,13174027-13174127,13173815-13173952	AT4G25950.1  CDS  gene_syn F20B18.60, F20B18_60, VATG3, VHA-G3, vacuolar ATP synthase G3  gene VATG3  function V-ATPase G-subunit like protein  go_component vacuole|GO:0005773|15215502|IDA  go_process proton transport|GO:0015992||IEA  go_function hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances|GO:0016820||IEA  product VATG3 (vacuolar ATP synthase G3); hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances  note vacuolar ATP synthase G3 (VATG3); FUNCTIONS IN: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; INVOLVED IN: proton transport; LOCATED IN: vacuole; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Vacuolar (H+)-ATPase G subunit (InterPro:IPR005124); BEST Arabidopsis thaliana protein match is: VMA10 (VACUOLAR MEMBRANE ATPASE 10); hydrogen ion transporting ATP synthase, rotational mechanism (TAIR:AT3G01390.2); Has 410 Blast hits to 410 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 229; Fungi - 80; Plants - 73; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT4G25950.1p  transcript_id AT4G25950.1  protein_id AT4G25950.1p  transcript_id AT4G25950.1  
At4g25960	chr4:013177438	0.0	W/13177438-13177800,13178047-13178101,13178190-13178365,13179223-13179423,13179530-13179789,13179893-13180433,13180553-13180932,13181050-13181447,13181565-13181806,13181888-13182135,13182256-13182668,13182803-13183143,13183222-13183425	AT4G25960.1  CDS  gene_syn F20B18.70, F20B18_70, P-GLYCOPROTEIN 2, PGP2  gene PGP2  go_component membrane|GO:0016020|17432890|IDA  go_process transport|GO:0006810||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product PGP2 (P-GLYCOPROTEIN 2); ATPase, coupled to transmembrane movement of substances  note P-GLYCOPROTEIN 2 (PGP2); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PGP10 (P-GLYCOPROTEIN 10); ATPase, coupled to transmembrane movement of substances (TAIR:AT1G10680.1); Has 503086 Blast hits to 234957 proteins in 2687 species: Archae - 8828; Bacteria - 337128; Metazoa - 15398; Fungi - 8306; Plants - 4562; Viruses - 34; Other Eukaryotes - 128830 (source: NCBI BLink).  protein_id AT4G25960.1p  transcript_id AT4G25960.1  protein_id AT4G25960.1p  transcript_id AT4G25960.1  
At4g25970	chr4:013184240	0.0	W/13184240-13184425,13184520-13184599,13184688-13184712,13184800-13184859,13184953-13185021,13185268-13185357,13185441-13185491,13185736-13185819,13186024-13186115,13186215-13186364,13186461-13186545,13186774-13186885,13187014-13187114,13187449-13187496,13187710-13187856,13188010-13188105,13188199-13188273,13188361-13188453,13188635-13188721,13188807-13188857,13189014-13189139	AT4G25970.1  CDS  gene_syn F20B18.80, F20B18_80, PSD3, phosphatidylserine decarboxylase 3  gene PSD3  function Encodes the major form of the two non-mitochondrail phosphatidylserine decarboxylase. Located at the ER.  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process phospholipid biosynthetic process|GO:0008654||IEA  go_component endoplasmic reticulum|GO:0005783|17449644|IDA  go_process phospholipid biosynthetic process|GO:0008654||ISS  go_function phosphatidylserine decarboxylase activity|GO:0004609|17449644|IDA  go_function phosphatidylserine decarboxylase activity|GO:0004609|17449644|IGI  product PSD3 (phosphatidylserine decarboxylase 3); phosphatidylserine decarboxylase  note phosphatidylserine decarboxylase 3 (PSD3); FUNCTIONS IN: phosphatidylserine decarboxylase activity; INVOLVED IN: N-terminal protein myristoylation, phospholipid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248), Phosphatidylserine decarboxylase-related (InterPro:IPR003817), EF-HAND 2 (InterPro:IPR018249), Phosphatidylserine decarboxylase (InterPro:IPR005221); BEST Arabidopsis thaliana protein match is: PSD2 (phosphatidylserine decarboxylase 2); phosphatidylserine decarboxylase (TAIR:AT5G57190.1); Has 2486 Blast hits to 2417 proteins in 839 species: Archae - 5; Bacteria - 1406; Metazoa - 236; Fungi - 351; Plants - 94; Viruses - 0; Other Eukaryotes - 394 (source: NCBI BLink).  protein_id AT4G25970.1p  transcript_id AT4G25970.1  protein_id AT4G25970.1p  transcript_id AT4G25970.1  
At4g25980	chr4:013189393	0.0	W/13189393-13189740,13189815-13189997,13190079-13190241,13191086-13191507	AT4G25980.1  CDS  gene_syn F20B18.90, F20B18_90  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||ISS  product cationic peroxidase, putative  note cationic peroxidase, putative; FUNCTIONS IN: peroxidase activity; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, embryo, seed; EXPRESSED DURING: D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT1G77100.1); Has 2824 Blast hits to 2812 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 61; Plants - 2740; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT4G25980.1p  transcript_id AT4G25980.1  protein_id AT4G25980.1p  transcript_id AT4G25980.1  
At4g25990	chr4:013192566	0.0	C/13192566-13193543,13192149-13192301,13191937-13191990	AT4G25990.1  CDS  gene_syn CIL, F20B18.100, F20B18_100  gene CIL  function chloroplast import apparatus CIA2-like. CIA2 is a transcription factor which upregulates chloroplast translocon genes  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product CIL  note CIL; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CIA2 (CHLOROPLAST IMPORT APPARATUS 2); transcription regulator (TAIR:AT5G57180.2); Has 1002 Blast hits to 1002 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 966; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT4G25990.1p  transcript_id AT4G25990.1  protein_id AT4G25990.1p  transcript_id AT4G25990.1  
At4g25990	chr4:013192566	0.0	C/13192566-13193543,13192149-13192301,13191937-13192035	AT4G25990.2  CDS  gene_syn CIL, F20B18.100, F20B18_100  gene CIL  function chloroplast import apparatus CIA2-like. CIA2 is a transcription factor which upregulates chloroplast translocon genes  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product CIL  note CIL; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CIA2 (CHLOROPLAST IMPORT APPARATUS 2); transcription regulator (TAIR:AT5G57180.2); Has 761 Blast hits to 761 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 755; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G25990.2p  transcript_id AT4G25990.2  protein_id AT4G25990.2p  transcript_id AT4G25990.2  
At4g26000	chr4:013197280	0.0	W/13197280-13197639,13197874-13198126,13198286-13198434,13198517-13198774,13198933-13199124,13199264-13199539	AT4G26000.1  CDS  gene_syn F20B18.110, F20B18_110, PEP, PEPPER  gene PEP  function Encodes a novel Arabidopsis gene encoding a polypeptide with K-homology (KH) RNA-binding modules, which acts on vegetative growth and pistil development. Genetic studies suggest that PEP interacts with element(s) of the CLAVATA signaling pathway.  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process shoot development|GO:0048367|16356489|IMP  go_process gynoecium development|GO:0048467|16356489|IMP  go_function nucleic acid binding|GO:0003676||ISS  product PEP (PEPPER); RNA binding / nucleic acid binding  note PEPPER (PEP); FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: shoot development, gynoecium development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: FLK (flowering locus KH domain); RNA binding / nucleic acid binding (TAIR:AT3G04610.1); Has 2136 Blast hits to 1582 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 1573; Fungi - 139; Plants - 358; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT4G26000.1p  transcript_id AT4G26000.1  protein_id AT4G26000.1p  transcript_id AT4G26000.1  
At4g26005	chr4:013200279	0.0	C/13200279-13200401	AT4G26005.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G26005.1p  transcript_id AT4G26005.1  protein_id AT4G26005.1p  transcript_id AT4G26005.1  
At4g26010	chr4:013200653	0.0	W/13200653-13200853,13200957-13201688	AT4G26010.1  CDS  gene_syn F20B18.120, F20B18_120  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT1G34510.1); Has 2625 Blast hits to 2608 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 43; Plants - 2564; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT4G26010.1p  transcript_id AT4G26010.1  protein_id AT4G26010.1p  transcript_id AT4G26010.1  
At4g26020	chr4:013203966	0.0	C/13203966-13204028,13203477-13203582,13203334-13203389,13203136-13203213,13202928-13203001,13202712-13202845,13202524-13202619,13202249-13202385	AT4G26020.1  CDS  gene_syn F20B18.130, F20B18_130  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: ATGRIP; protein binding (TAIR:AT5G66030.2); Has 14545 Blast hits to 10066 proteins in 618 species: Archae - 167; Bacteria - 1198; Metazoa - 6354; Fungi - 992; Plants - 404; Viruses - 34; Other Eukaryotes - 5396 (source: NCBI BLink).  protein_id AT4G26020.1p  transcript_id AT4G26020.1  protein_id AT4G26020.1p  transcript_id AT4G26020.1  
At4g26030	chr4:013205537	0.0	W/13205537-13206199	AT4G26030.1  CDS  gene_syn F20B18.140, F20B18_140  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT2G15740.1); Has 13 Blast hits to 13 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G26030.1p  transcript_id AT4G26030.1  protein_id AT4G26030.1p  transcript_id AT4G26030.1  
At4g26040	chr4:013206835	0.0	W/13206835-13207203	AT4G26040.1  CDS  gene_syn F20B18.150, F20B18_150  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G26040.1p  transcript_id AT4G26040.1  protein_id AT4G26040.1p  transcript_id AT4G26040.1  
At4g26050	chr4:013210522	0.0	W/13210522-13210800,13211972-13212141,13212218-13212629,13212859-13213149	AT4G26050.1  CDS  gene_syn F20B18.160, F20B18_160  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT2G19330.1); Has 52856 Blast hits to 22826 proteins in 844 species: Archae - 32; Bacteria - 4959; Metazoa - 27965; Fungi - 1573; Plants - 15073; Viruses - 23; Other Eukaryotes - 3231 (source: NCBI BLink).  protein_id AT4G26050.1p  transcript_id AT4G26050.1  protein_id AT4G26050.1p  transcript_id AT4G26050.1  
At4g26055	chr4:013214304	0.0	C/13214304-13214429,13214098-13214160	AT4G26055.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57080.1); Has 9 Blast hits to 9 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G26055.1p  transcript_id AT4G26055.1  protein_id AT4G26055.1p  transcript_id AT4G26055.1  
At4g26060	chr4:013215946	0.0	C/13215946-13215955,13215558-13215662,13215322-13215436,13215111-13215228,13214972-13215025	AT4G26060.1  CDS  gene_syn F20B18.170, F20B18_170  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57060.1); Has 47 Blast hits to 47 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G26060.1p  transcript_id AT4G26060.1  protein_id AT4G26060.1p  transcript_id AT4G26060.1  
At4g26070	chr4:013217797	0.0	W/13217797-13217867,13218147-13218231,13218318-13218452,13218539-13218763,13218863-13219045,13219154-13219377,13219461-13219506,13219600-13219695	AT4G26070.2  CDS  gene_syn ATMEK1, F20B18.180, F20B18_180, MAP KINASE/ ERK KINASE 1, MEK1, MITOGEN ACTIVATED PROTEIN KINASE KINASE, MITOGEN ACTIVATED PROTEIN KINASE KINASE 1, MKK1, NMAPKK  gene MEK1  function Member of MAP Kinase Kinase. Likely functions in a stress-activated MAPK pathway. Can phosphorylate the MAPK AtMPK4, in response to stress. Gets phosphorylated by MEKK1 in response to wounding.  go_component cellular_component|GO:0005575||ND  go_process MAPKKK cascade|GO:0000165|12119167|IC  go_process response to molecule of bacterial origin|GO:0002237|17059410|IDA  go_process response to water deprivation|GO:0009414|18248592|IMP  go_process response to wounding|GO:0009611|9426629|IEP  go_process response to abiotic stimulus|GO:0009628|12119167|TAS  go_process defense response, incompatible interaction|GO:0009814|18599650|IGI  go_process response to hydrogen peroxide|GO:0042542|11500556|IEP  go_process response to hydrogen peroxide|GO:0042542|15225555|IDA  go_process defense response to bacterium|GO:0042742|15225555|IDA  go_function MAP kinase kinase activity|GO:0004708|10759527|IDA  go_function MAP kinase kinase activity|GO:0004708|12119167|TAS  go_function protein binding|GO:0005515|16211390|IPI  go_function protein binding|GO:0005515|9804171|IPI  go_function kinase activity|GO:0016301||ISS  product MEK1 (MAP KINASE/ ERK KINASE 1); MAP kinase kinase/ kinase/ protein binding  note MAP KINASE/ ERK KINASE 1 (MEK1); FUNCTIONS IN: protein binding, MAP kinase kinase activity, kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2); MAP kinase kinase/ kinase (TAIR:AT4G29810.1); Has 94925 Blast hits to 93574 proteins in 3094 species: Archae - 76; Bacteria - 8395; Metazoa - 40985; Fungi - 8441; Plants - 18777; Viruses - 489; Other Eukaryotes - 17762 (source: NCBI BLink).  protein_id AT4G26070.2p  transcript_id AT4G26070.2  protein_id AT4G26070.2p  transcript_id AT4G26070.2  
At4g26070	chr4:013217797	0.0	W/13217797-13217867,13218147-13218231,13218318-13218452,13218539-13218763,13218863-13219045,13219154-13219377,13219461-13219506,13219600-13219695	AT4G26070.3  CDS  gene_syn ATMEK1, F20B18.180, F20B18_180, MAP KINASE/ ERK KINASE 1, MEK1, MITOGEN ACTIVATED PROTEIN KINASE KINASE, MITOGEN ACTIVATED PROTEIN KINASE KINASE 1, MKK1, NMAPKK  gene MEK1  function Member of MAP Kinase Kinase. Likely functions in a stress-activated MAPK pathway. Can phosphorylate the MAPK AtMPK4, in response to stress. Gets phosphorylated by MEKK1 in response to wounding.  go_component cellular_component|GO:0005575||ND  go_process MAPKKK cascade|GO:0000165|12119167|IC  go_process response to molecule of bacterial origin|GO:0002237|17059410|IDA  go_process response to water deprivation|GO:0009414|18248592|IMP  go_process response to wounding|GO:0009611|9426629|IEP  go_process response to abiotic stimulus|GO:0009628|12119167|TAS  go_process defense response, incompatible interaction|GO:0009814|18599650|IGI  go_process response to hydrogen peroxide|GO:0042542|11500556|IEP  go_process response to hydrogen peroxide|GO:0042542|15225555|IDA  go_process defense response to bacterium|GO:0042742|15225555|IDA  go_function MAP kinase kinase activity|GO:0004708|10759527|IDA  go_function MAP kinase kinase activity|GO:0004708|12119167|TAS  go_function protein binding|GO:0005515|16211390|IPI  go_function protein binding|GO:0005515|9804171|IPI  go_function kinase activity|GO:0016301||ISS  product MEK1 (MAP KINASE/ ERK KINASE 1); MAP kinase kinase/ kinase/ protein binding  note MAP KINASE/ ERK KINASE 1 (MEK1); FUNCTIONS IN: protein binding, MAP kinase kinase activity, kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2); MAP kinase kinase/ kinase (TAIR:AT4G29810.1); Has 94925 Blast hits to 93574 proteins in 3094 species: Archae - 76; Bacteria - 8395; Metazoa - 40985; Fungi - 8441; Plants - 18777; Viruses - 489; Other Eukaryotes - 17762 (source: NCBI BLink).  protein_id AT4G26070.3p  transcript_id AT4G26070.3  protein_id AT4G26070.3p  transcript_id AT4G26070.3  
At4g26070	chr4:013217797	0.0	W/13217797-13217867,13218147-13218231,13218318-13218452,13218539-13218763,13218863-13219045,13219154-13219381	AT4G26070.1  CDS  gene_syn ATMEK1, F20B18.180, F20B18_180, MAP KINASE/ ERK KINASE 1, MEK1, MITOGEN ACTIVATED PROTEIN KINASE KINASE, MITOGEN ACTIVATED PROTEIN KINASE KINASE 1, MKK1, NMAPKK  gene MEK1  function Member of MAP Kinase Kinase. Likely functions in a stress-activated MAPK pathway. Can phosphorylate the MAPK AtMPK4, in response to stress. Gets phosphorylated by MEKK1 in response to wounding.  go_component cellular_component|GO:0005575||ND  go_process MAPKKK cascade|GO:0000165|12119167|IC  go_process response to molecule of bacterial origin|GO:0002237|17059410|IDA  go_process response to water deprivation|GO:0009414|18248592|IMP  go_process response to wounding|GO:0009611|9426629|IEP  go_process response to abiotic stimulus|GO:0009628|12119167|TAS  go_process defense response, incompatible interaction|GO:0009814|18599650|IGI  go_process response to hydrogen peroxide|GO:0042542|11500556|IEP  go_process response to hydrogen peroxide|GO:0042542|15225555|IDA  go_process defense response to bacterium|GO:0042742|15225555|IDA  go_function MAP kinase kinase activity|GO:0004708|10759527|IDA  go_function MAP kinase kinase activity|GO:0004708|12119167|TAS  go_function protein binding|GO:0005515|16211390|IPI  go_function protein binding|GO:0005515|9804171|IPI  go_function kinase activity|GO:0016301||ISS  product MEK1 (MAP KINASE/ ERK KINASE 1); MAP kinase kinase/ kinase/ protein binding  note MAP KINASE/ ERK KINASE 1 (MEK1); FUNCTIONS IN: protein binding, MAP kinase kinase activity, kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2); MAP kinase kinase/ kinase (TAIR:AT4G29810.1); Has 93478 Blast hits to 92389 proteins in 3079 species: Archae - 76; Bacteria - 8310; Metazoa - 40452; Fungi - 8285; Plants - 18452; Viruses - 478; Other Eukaryotes - 17425 (source: NCBI BLink).  protein_id AT4G26070.1p  transcript_id AT4G26070.1  protein_id AT4G26070.1p  transcript_id AT4G26070.1  
At4g26080	chr4:013221280	0.0	C/13221280-13221828,13220919-13221209,13220682-13220787,13220231-13220589	AT4G26080.1  CDS  gene_syn ABA INSENSITIVE 1, ABI1, F20B18.190, F20B18_190, PROTEIN PHOSPHATASE 2C ABI1  gene ABI1  function Involved in abscisic acid (ABA) signal transduction. Negative regulator of ABA promotion of stomatal closure.  go_component nucleus|GO:0005634|18298671|IDA  go_component protein serine/threonine phosphatase complex|GO:0008287|9869399|TAS  go_process protein amino acid dephosphorylation|GO:0006470|9869399|TAS  go_process response to heat|GO:0009408|15923322|IMP  go_process response to cold|GO:0009409|12228349|IMP  go_process response to cold|GO:0009409|1834244|IMP  go_process response to abscisic acid stimulus|GO:0009737|8492808|IMP  go_process regulation of abscisic acid mediated signaling|GO:0009787|18298671|IMP  go_process negative regulation of abscisic acid mediated signaling|GO:0009788|16614222|IMP  go_process regulation of stomatal movement|GO:0010119|16614222|IMP  go_function protein serine/threonine phosphatase activity|GO:0004722|8898906|IDA  go_function protein serine/threonine phosphatase activity|GO:0004722|9537523|IDA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  go_function calcium ion binding|GO:0005509|7910981|TAS  go_function calcium ion binding|GO:0005509|8197457|TAS  product ABI1 (ABA INSENSITIVE 1); calcium ion binding / protein serine/threonine phosphatase  note ABA INSENSITIVE 1 (ABI1); FUNCTIONS IN: protein serine/threonine phosphatase activity, calcium ion binding; INVOLVED IN: in 7 processes; LOCATED IN: nucleus, protein serine/threonine phosphatase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: ABI2 (ABA INSENSITIVE 2); protein serine/threonine phosphatase (TAIR:AT5G57050.1); Has 4517 Blast hits to 4405 proteins in 293 species: Archae - 2; Bacteria - 136; Metazoa - 1497; Fungi - 523; Plants - 1343; Viruses - 7; Other Eukaryotes - 1009 (source: NCBI BLink).  protein_id AT4G26080.1p  transcript_id AT4G26080.1  protein_id AT4G26080.1p  transcript_id AT4G26080.1  
At4g26095	chr4:013224338	0.0	C/13224338-13227622	AT4G26095.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT4G26090  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G26095.1  
At4g26090	chr4:013224596	0.0	W/13224596-13227325	AT4G26090.1  CDS  gene_syn DISEASE RESISTANCE PROTEIN RPS2, F20B18.200, F20B18_200, RESISTANT TO P. SYRINGAE 2, RPS2  gene RPS2  function Encodes a plasma membrane protein with leucine-rich repeat, leucine zipper, and P loop domains that confers resistance to Pseudomonas syringae infection by interacting with the avirulence gene avrRpt2. RPS2 protein interacts directly with plasma membrane associated protein RIN4 and this interaction is disrupted by avrRpt2.  go_component plasma membrane|GO:0005886|12581526|IDA  go_process defense response|GO:0006952|11333251|TAS  go_process defense response|GO:0006952|8091210|TAS  go_process defense response|GO:0006952||ISS  go_process plant-type hypersensitive response|GO:0009626|11204781|IMP  go_process detection of bacterium|GO:0016045|11333251|IMP  go_process defense response to bacterium|GO:0042742|8091210|IMP  go_function protein binding|GO:0005515|12581526|IPI  product RPS2 (RESISTANT TO P. SYRINGAE 2); protein binding  note RESISTANT TO P. SYRINGAE 2 (RPS2); FUNCTIONS IN: protein binding; INVOLVED IN: defense response to bacterium, detection of bacterium, plant-type hypersensitive response, defense response; LOCATED IN: plasma membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT1G12280.1); Has 15559 Blast hits to 12995 proteins in 516 species: Archae - 18; Bacteria - 905; Metazoa - 4135; Fungi - 181; Plants - 9884; Viruses - 0; Other Eukaryotes - 436 (source: NCBI BLink).  protein_id AT4G26090.1p  transcript_id AT4G26090.1  protein_id AT4G26090.1p  transcript_id AT4G26090.1  
At4g26100	chr4:013230433	0.0	C/13230433-13230508,13230298-13230338,13230080-13230149,13229839-13229987,13229652-13229747,13229489-13229559,13229321-13229382,13229138-13229201,13228964-13229048,13228749-13228875,13228593-13228675,13228453-13228516,13228246-13228361,13227885-13228133	AT4G26100.1  CDS  gene_syn CASEIN KINASE 1, CK1, CKL1  gene CK1  function Encodes a member of the casein kinase 1 protein family that is expressed in punctate particles at the cell periphery suggesting possible plasmodesmatal localization.  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component plasmodesma|GO:0009506|16126836|IDA  go_function kinase activity|GO:0016301||ISS  product CK1 (CASEIN KINASE 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note CASEIN KINASE 1 (CK1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasmodesma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ckl12 (Casein Kinase I-like 12); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G57015.1); Has 46586 Blast hits to 46277 proteins in 1416 species: Archae - 10; Bacteria - 5399; Metazoa - 20574; Fungi - 4320; Plants - 6377; Viruses - 355; Other Eukaryotes - 9551 (source: NCBI BLink).  protein_id AT4G26100.1p  transcript_id AT4G26100.1  protein_id AT4G26100.1p  transcript_id AT4G26100.1  
At4g26110	chr4:013232712	0.0	W/13232712-13232757,13232880-13232923,13233119-13233214,13233375-13233467,13233620-13233710,13233804-13233865,13233955-13234139,13234278-13234455,13234534-13234577,13234715-13234904,13235010-13235027,13235431-13235502	AT4G26110.1  CDS  gene_syn ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, ATNAP1;1, F20B18.220, F20B18_220, NAP1;1, NUCLEOSOME ASSEMBLY PROTEIN1;1  gene NAP1;1  function Encodes a member of a small gene family of proteins with similarity to nucleosome assembly proteins.May function in nucleotide excision repair. Loss of function mutations have no obvious visible phenotypes but do seem to affect transcription of NER related genes.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component nucleus|GO:0005634|19228338|IDA  go_component nucleus|GO:0005634||ISS  go_component cytoplasm|GO:0005737|19228338|IDA  go_process DNA repair|GO:0006281|19228338|IGI  go_process nucleosome assembly|GO:0006334||ISS  go_function DNA binding|GO:0003677||ISS  product NAP1;1 (NUCLEOSOME ASSEMBLY PROTEIN1;1); DNA binding  note NUCLEOSOME ASSEMBLY PROTEIN1;1 (NAP1;1); FUNCTIONS IN: DNA binding; INVOLVED IN: DNA repair, nucleosome assembly; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleosome assembly protein (NAP) (InterPro:IPR002164); BEST Arabidopsis thaliana protein match is: NAP1;3 (NUCLEOSOME ASSEMBLY PROTEIN 1;3); DNA binding (TAIR:AT5G56950.1); Has 21824 Blast hits to 12511 proteins in 606 species: Archae - 37; Bacteria - 776; Metazoa - 10123; Fungi - 3022; Plants - 1261; Viruses - 314; Other Eukaryotes - 6291 (source: NCBI BLink).  protein_id AT4G26110.1p  transcript_id AT4G26110.1  protein_id AT4G26110.1p  transcript_id AT4G26110.1  
At4g26110	chr4:013232712	0.0	W/13232712-13232757,13232880-13232923,13233119-13233214,13233375-13233467,13233620-13233710,13233804-13233865,13233955-13234139,13234278-13234455,13234534-13234577,13234715-13234904,13235010-13235060	AT4G26110.2  CDS  gene_syn ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, ATNAP1;1, F20B18.220, F20B18_220, NAP1;1, NUCLEOSOME ASSEMBLY PROTEIN1;1  gene NAP1;1  function Encodes a member of a small gene family of proteins with similarity to nucleosome assembly proteins.May function in nucleotide excision repair. Loss of function mutations have no obvious visible phenotypes but do seem to affect transcription of NER related genes.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component nucleus|GO:0005634|19228338|IDA  go_component nucleus|GO:0005634||ISS  go_component cytoplasm|GO:0005737|19228338|IDA  go_process DNA repair|GO:0006281|19228338|IGI  go_process nucleosome assembly|GO:0006334||ISS  go_function DNA binding|GO:0003677||ISS  product NAP1;1 (NUCLEOSOME ASSEMBLY PROTEIN1;1); DNA binding  note NUCLEOSOME ASSEMBLY PROTEIN1;1 (NAP1;1); FUNCTIONS IN: DNA binding; INVOLVED IN: DNA repair, nucleosome assembly; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleosome assembly protein (NAP) (InterPro:IPR002164); BEST Arabidopsis thaliana protein match is: NAP1;3 (NUCLEOSOME ASSEMBLY PROTEIN 1;3); DNA binding (TAIR:AT5G56950.1); Has 1953 Blast hits to 1904 proteins in 250 species: Archae - 0; Bacteria - 17; Metazoa - 1177; Fungi - 215; Plants - 149; Viruses - 8; Other Eukaryotes - 387 (source: NCBI BLink).  protein_id AT4G26110.2p  transcript_id AT4G26110.2  protein_id AT4G26110.2p  transcript_id AT4G26110.2  
At4g26120	chr4:013236448	0.0	W/13236448-13237005,13237076-13237814,13237900-13238103,13238186-13238487	AT4G26120.1  CDS  gene_syn F20B18.230, F20B18_230  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process response to chitin|GO:0010200|17722694|IEP  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein / BTB/POZ domain-containing protein  note ankyrin repeat family protein / BTB/POZ domain-containing protein; FUNCTIONS IN: protein binding; INVOLVED IN: response to chitin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: NPR1 (NONEXPRESSER OF PR GENES 1); protein binding / transcription activator (TAIR:AT1G64280.1); Has 1856 Blast hits to 1451 proteins in 118 species: Archae - 0; Bacteria - 49; Metazoa - 563; Fungi - 21; Plants - 552; Viruses - 9; Other Eukaryotes - 662 (source: NCBI BLink).  protein_id AT4G26120.1p  transcript_id AT4G26120.1  protein_id AT4G26120.1p  transcript_id AT4G26120.1  
At4g26130	chr4:013240403	0.0	C/13240403-13241263	AT4G26130.1  CDS  gene_syn F20B18.240, F20B18_240  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56980.1); Has 73 Blast hits to 72 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 2; Plants - 63; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G26130.1p  transcript_id AT4G26130.1  protein_id AT4G26130.1p  transcript_id AT4G26130.1  
At4g26140	chr4:013247650	0.0	C/13247650-13247823,13247294-13247389,13247092-13247204,13246926-13246992,13246744-13246836,13246486-13246629,13245671-13245759,13245421-13245526,13245253-13245337,13245042-13245160,13244785-13244946,13244508-13244683,13244299-13244405,13244114-13244223,13243920-13244030,13243674-13243832	AT4G26140.2  CDS  gene_syn BGAL12, F20B18.250, F20B18_250, beta-galactosidase 12  gene BGAL12  function putative beta-galactosidase  go_component beta-galactosidase complex|GO:0009341||IEA  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  go_function cation binding|GO:0043169||IEA  go_function beta-galactosidase activity|GO:0004565||ISS  product BGAL12 (beta-galactosidase 12); beta-galactosidase/ catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note beta-galactosidase 12 (BGAL12); FUNCTIONS IN: cation binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system, beta-galactosidase complex; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase family 2, carbohydrate-binding (InterPro:IPR006104), Glycoside hydrolase, family 35 (InterPro:IPR001944), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: BGAL2 (beta-galactosidase 2); beta-galactosidase/ catalytic/ cation binding (TAIR:AT3G52840.1); Has 1154 Blast hits to 1149 proteins in 254 species: Archae - 11; Bacteria - 310; Metazoa - 306; Fungi - 118; Plants - 362; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT4G26140.2p  transcript_id AT4G26140.2  protein_id AT4G26140.2p  transcript_id AT4G26140.2  
At4g26140	chr4:013247650	0.0	C/13247650-13247823,13247294-13247389,13247092-13247204,13246926-13246992,13246744-13246836,13246486-13246629,13245671-13245759,13245421-13245526,13245253-13245337,13245042-13245160,13244785-13244946,13244508-13244689,13244299-13244405,13244114-13244223,13243920-13244030,13243722-13243832,13243410-13243615,13243219-13243330	AT4G26140.1  CDS  gene_syn BGAL12, F20B18.250, F20B18_250, beta-galactosidase 12  gene BGAL12  function putative beta-galactosidase  go_component beta-galactosidase complex|GO:0009341||IEA  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process lactose catabolic process|GO:0005990||IEA  go_process lactose catabolic process, using glucoside 3-dehydrogenase|GO:0019513||IEA  go_process lactose catabolic process via UDP-galactose|GO:0019515||IEA  go_function catalytic activity|GO:0003824||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  go_function cation binding|GO:0043169||IEA  go_function beta-galactosidase activity|GO:0004565||ISS  product BGAL12 (beta-galactosidase 12); beta-galactosidase/ catalytic/ cation binding  note beta-galactosidase 12 (BGAL12); FUNCTIONS IN: cation binding, beta-galactosidase activity, catalytic activity; INVOLVED IN: lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process; LOCATED IN: endomembrane system, beta-galactosidase complex; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Galactose-binding like (InterPro:IPR008979), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGAL2 (beta-galactosidase 2); beta-galactosidase/ catalytic/ cation binding (TAIR:AT3G52840.1); Has 1250 Blast hits to 1163 proteins in 255 species: Archae - 11; Bacteria - 369; Metazoa - 331; Fungi - 120; Plants - 370; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT4G26140.1p  transcript_id AT4G26140.1  protein_id AT4G26140.1p  transcript_id AT4G26140.1  
At4g26150	chr4:013253210	0.0	W/13253210-13253491,13253574-13253951,13254261-13254659	AT4G26150.1  CDS  gene_syn CGA1, CYTOKININ-RESPONSIVE GATA FACTOR 1, F20B18.260, F20B18_260  gene CGA1  go_component nucleus|GO:0005634||IEA  go_process response to cytokinin stimulus|GO:0009735|16212609|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1); transcription factor  note CYTOKININ-RESPONSIVE GATA FACTOR 1 (CGA1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to cytokinin stimulus; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GNC (GATA, nitrate-inducible, carbon metabolism-involved); transcription factor (TAIR:AT5G56860.1); Has 1008 Blast hits to 988 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 85; Fungi - 426; Plants - 402; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT4G26150.1p  transcript_id AT4G26150.1  protein_id AT4G26150.1p  transcript_id AT4G26150.1  
At4g26160	chr4:013255296	0.0	W/13255296-13255514,13255887-13256069,13256234-13256398,13256534-13256632	AT4G26160.1  CDS  gene_syn ACHT1, ATYPICAL CYS HIS RICH THIOREDOXIN 1  gene ACHT1  function Encodes a member of the thioredoxin family protein. Located in the chloroplast. Shows high activity towards the chloroplast 2-Cys peroxiredoxin A, and poor activity towards the chloroplast NADP-malate dehydrogenase.  go_component chloroplast thylakoid|GO:0009534|19259774|IDA  go_component chloroplast stroma|GO:0009570|19259774|IDA  go_process cell redox homeostasis|GO:0045454||IEA  go_component chloroplast|GO:0009507|19109414|IDA  go_component chloroplast stroma|GO:0009570|19109414|IDA  go_component chloroplast membrane|GO:0031969|19109414|IDA  go_function oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor|GO:0016671|19109414|IDA  product ACHT1 (ATYPICAL CYS HIS RICH THIOREDOXIN 1); oxidoreductase, acting on sulfur group of donors, disulfide as acceptor  note ATYPICAL CYS HIS RICH THIOREDOXIN 1 (ACHT1); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast membrane, chloroplast, chloroplast stroma, chloroplast thylakoid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin family protein (TAIR:AT4G29670.1); Has 7134 Blast hits to 7045 proteins in 1305 species: Archae - 68; Bacteria - 2892; Metazoa - 1210; Fungi - 499; Plants - 834; Viruses - 3; Other Eukaryotes - 1628 (source: NCBI BLink).  protein_id AT4G26160.1p  transcript_id AT4G26160.1  protein_id AT4G26160.1p  transcript_id AT4G26160.1  
At4g26170	chr4:013256930	0.0	W/13256930-13256975,13257037-13257090,13257209-13257329,13257674-13257829,13258067-13258176,13258349-13259382	AT4G26170.1  CDS  gene_syn T25K17.5  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56780.1); Has 45 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G26170.1p  transcript_id AT4G26170.1  protein_id AT4G26170.1p  transcript_id AT4G26170.1  
At4g26180	chr4:013261750	0.0	C/13261750-13261887,13261478-13261563,13261186-13261393,13260974-13261082,13260693-13260877,13260475-13260600,13260263-13260388	AT4G26180.1  CDS  gene_syn T25K17.6  go_component mitochondrial inner membrane|GO:0005743||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function transporter activity|GO:0005215||ISS  go_function binding|GO:0005488||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: transporter activity, binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: mitochondrial substrate carrier family protein (TAIR:AT1G14560.1); Has 19760 Blast hits to 10176 proteins in 359 species: Archae - 0; Bacteria - 0; Metazoa - 10384; Fungi - 5076; Plants - 2417; Viruses - 3; Other Eukaryotes - 1880 (source: NCBI BLink).  protein_id AT4G26180.1p  transcript_id AT4G26180.1  protein_id AT4G26180.1p  transcript_id AT4G26180.1  
At4g26190	chr4:013263657	0.0	C/13263657-13266282,13263434-13263545,13263300-13263363,13262864-13263049,13262709-13262769,13262473-13262627	AT4G26190.1  CDS  gene_syn T25K17.7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36550.1); Has 24148 Blast hits to 14674 proteins in 713 species: Archae - 56; Bacteria - 1518; Metazoa - 9576; Fungi - 1916; Plants - 955; Viruses - 87; Other Eukaryotes - 10040 (source: NCBI BLink).  protein_id AT4G26190.1p  transcript_id AT4G26190.1  protein_id AT4G26190.1p  transcript_id AT4G26190.1  
At4g26200	chr4:013275307	0.0	W/13275307-13275495,13275596-13275891,13276088-13276946	AT4G26200.1  CDS  gene_syn ACS7, ATACS7, T25K17.10, T25K17_10  gene ACS7  function Member of a family of proteins in Arabidopsis that encode 1-Amino-cyclopropane-1-carboxylate synthase, an enzyme involved in ethylene biosynthesis. Not expressed in response to IAA.  go_component cellular_component|GO:0005575||ND  go_process ethylene biosynthetic process|GO:0009693|16311726|TAS  go_process ethylene biosynthetic process|GO:0009693||ISS  go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847|12968022|IDA  go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847||ISS  product ACS7; 1-aminocyclopropane-1-carboxylate synthase  note ACS7; FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate synthase activity; INVOLVED IN: ethylene biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase, class I and II (InterPro:IPR004839), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: ACS9 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 9); 1-aminocyclopropane-1-carboxylate synthase (TAIR:AT3G49700.1); Has 20662 Blast hits to 20658 proteins in 1702 species: Archae - 557; Bacteria - 12168; Metazoa - 584; Fungi - 508; Plants - 920; Viruses - 0; Other Eukaryotes - 5925 (source: NCBI BLink).  protein_id AT4G26200.1p  transcript_id AT4G26200.1  protein_id AT4G26200.1p  transcript_id AT4G26200.1  
At4g26210	chr4:013282370	0.0	W/13282370-13282551,13282932-13283118	AT4G26210.1  CDS  gene_syn T25K17.20, T25K17_20  go_component mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)|GO:0000276||IEA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_function hydrogen ion transmembrane transporter activity|GO:0015078||IEA  go_process proton transport|GO:0015992||ISS  product mitochondrial ATP synthase g subunit family protein  note mitochondrial ATP synthase g subunit family protein; FUNCTIONS IN: hydrogen ion transmembrane transporter activity; INVOLVED IN: proton transport, ATP synthesis coupled proton transport; LOCATED IN: mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F0 complex, subunit G, mitochondrial (InterPro:IPR006808); BEST Arabidopsis thaliana protein match is: mitochondrial ATP synthase g subunit family protein (TAIR:AT4G29480.1); Has 56 Blast hits to 56 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G26210.1p  transcript_id AT4G26210.1  protein_id AT4G26210.1p  transcript_id AT4G26210.1  
At4g26210	chr4:013282370	0.0	W/13282370-13282551,13282932-13283118	AT4G26210.2  CDS  gene_syn T25K17.20, T25K17_20  go_component mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)|GO:0000276||IEA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_function hydrogen ion transmembrane transporter activity|GO:0015078||IEA  go_process proton transport|GO:0015992||ISS  product mitochondrial ATP synthase g subunit family protein  note mitochondrial ATP synthase g subunit family protein; FUNCTIONS IN: hydrogen ion transmembrane transporter activity; INVOLVED IN: proton transport, ATP synthesis coupled proton transport; LOCATED IN: mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F0 complex, subunit G, mitochondrial (InterPro:IPR006808); BEST Arabidopsis thaliana protein match is: mitochondrial ATP synthase g subunit family protein (TAIR:AT4G29480.1); Has 56 Blast hits to 56 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G26210.2p  transcript_id AT4G26210.2  protein_id AT4G26210.2p  transcript_id AT4G26210.2  
At4g26220	chr4:013284179	0.0	W/13284179-13284229,13284307-13284531,13284638-13284769,13284856-13285146	AT4G26220.1  CDS  gene_syn T25K17.30, T25K17_30  go_function O-methyltransferase activity|GO:0008171||IEA  go_component cytosol|GO:0005829|9484457|TAS  product caffeoyl-CoA 3-O-methyltransferase, putative  note caffeoyl-CoA 3-O-methyltransferase, putative; FUNCTIONS IN: O-methyltransferase activity; LOCATED IN: cytosol; EXPRESSED IN: shoot, inflorescence meristem, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: O-methyltransferase, family 3 (InterPro:IPR002935); BEST Arabidopsis thaliana protein match is: caffeoyl-CoA 3-O-methyltransferase, putative (TAIR:AT4G34050.1); Has 3266 Blast hits to 3264 proteins in 725 species: Archae - 19; Bacteria - 1359; Metazoa - 180; Fungi - 50; Plants - 442; Viruses - 0; Other Eukaryotes - 1216 (source: NCBI BLink).  protein_id AT4G26220.1p  transcript_id AT4G26220.1  protein_id AT4G26220.1p  transcript_id AT4G26220.1  
At4g26225	chr4:013285423	0.0	C/13285423-13285494	AT4G26225.1  tRNA  gene_syn 67159.TRNA-PRO-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT4G26225.1  
At4g26230	chr4:013286026	0.0	W/13286026-13286105,13286274-13286553	AT4G26230.1  CDS  gene_syn T25K17.40, T25K17_40  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L31 (RPL31B)  note 60S ribosomal protein L31 (RPL31B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, ribosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L31e (InterPro:IPR000054); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L31 (RPL31C) (TAIR:AT5G56710.1); Has 865 Blast hits to 865 proteins in 270 species: Archae - 110; Bacteria - 2; Metazoa - 389; Fungi - 91; Plants - 124; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT4G26230.1p  transcript_id AT4G26230.1  protein_id AT4G26230.1p  transcript_id AT4G26230.1  
At4g26240	chr4:013288788	0.0	C/13288788-13288896,13288635-13288696,13288466-13288549,13288014-13288068,13287467-13287602,13287214-13287264,13287011-13287110	AT4G26240.1  CDS  gene_syn T25K17.50, T25K17_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 17 Blast hits to 17 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G26240.1p  transcript_id AT4G26240.1  protein_id AT4G26240.1p  transcript_id AT4G26240.1  
At4g26250	chr4:013289641	0.0	W/13289641-13289973,13290215-13290538,13290619-13290753,13290835-13291053	AT4G26250.1  CDS  gene_syn Arabidopsis thaliana galactinol synthase 6, AtGolS6, T25K17.60, T25K17_60  gene AtGolS6  go_component cellular_component|GO:0005575||ND  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product AtGolS6 (Arabidopsis thaliana galactinol synthase 6); transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note Arabidopsis thaliana galactinol synthase 6 (AtGolS6); FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, pedicel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: AtGolS5 (Arabidopsis thaliana galactinol synthase 5); transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT5G23790.1); Has 887 Blast hits to 886 proteins in 202 species: Archae - 0; Bacteria - 78; Metazoa - 224; Fungi - 187; Plants - 285; Viruses - 64; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT4G26250.1p  transcript_id AT4G26250.1  protein_id AT4G26250.1p  transcript_id AT4G26250.1  
At4g26255	chr4:013293941	0.0	W/13293941-13296465	AT4G26255.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G26255.1  
At4g26260	chr4:013297939	0.0	W/13297939-13297969,13298157-13298298,13298448-13298529,13298662-13298866,13298974-13299033,13299124-13299176,13299342-13299464,13299575-13299644,13299742-13299820,13299914-13299995,13300120-13300146	AT4G26260.1  CDS  gene_syn MIOX4, MYO-INOSITOL OXYGENASE 4, T25K17.70, T25K17_70  gene MIOX4  function Encodes a myo-inositol oxygenase.  go_component cytoplasm|GO:0005737||IEA  go_process L-ascorbic acid biosynthetic process|GO:0019853|14976233|IMP  go_function inositol oxygenase activity|GO:0050113|14976233|IDA  product MIOX4; inositol oxygenase  note MIOX4; FUNCTIONS IN: inositol oxygenase activity; INVOLVED IN: L-ascorbic acid biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF706 (InterPro:IPR007828); BEST Arabidopsis thaliana protein match is: MIOX5; inositol oxygenase/ iron ion binding (TAIR:AT5G56640.1); Has 348 Blast hits to 348 proteins in 107 species: Archae - 0; Bacteria - 12; Metazoa - 116; Fungi - 79; Plants - 54; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).  protein_id AT4G26260.1p  transcript_id AT4G26260.1  protein_id AT4G26260.1p  transcript_id AT4G26260.1  
At4g26270	chr4:013303929	0.0	C/13303929-13304030,13303504-13303550,13303350-13303389,13303191-13303253,13302973-13303110,13302727-13302885,13302585-13302638,13302446-13302514,13302226-13302355,13301875-13302140,13301732-13301777,13301499-13301653,13301094-13301294	AT4G26270.1  CDS  gene_syn PFK3, PHOSPHOFRUCTOKINASE 3, T25K17.80, T25K17_80  gene PFK3  go_component cytosol|GO:0005829|17485088|IDA  go_component 6-phosphofructokinase complex|GO:0005945||ISS  go_process glycolysis|GO:0006096|17485088|IDA  go_process glycolysis|GO:0006096||ISS  go_function 6-phosphofructokinase activity|GO:0003872|17485088|IDA  go_function 6-phosphofructokinase activity|GO:0003872||ISS  product PFK3 (PHOSPHOFRUCTOKINASE 3); 6-phosphofructokinase  note PHOSPHOFRUCTOKINASE 3 (PFK3); FUNCTIONS IN: 6-phosphofructokinase activity; INVOLVED IN: glycolysis; LOCATED IN: cytosol, 6-phosphofructokinase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase TP0108 (InterPro:IPR012004), Phosphofructokinase (InterPro:IPR000023); BEST Arabidopsis thaliana protein match is: PFK7 (PHOSPHOFRUCTOKINASE 7); 6-phosphofructokinase (TAIR:AT5G56630.1); Has 4949 Blast hits to 4533 proteins in 1180 species: Archae - 20; Bacteria - 2591; Metazoa - 576; Fungi - 280; Plants - 228; Viruses - 2; Other Eukaryotes - 1252 (source: NCBI BLink).  protein_id AT4G26270.1p  transcript_id AT4G26270.1  protein_id AT4G26270.1p  transcript_id AT4G26270.1  
At4g26280	chr4:013305396	0.0	C/13305396-13305722,13304721-13305338	AT4G26280.1  CDS  gene_syn T25K17.90, T25K17_90  go_function sulfotransferase activity|GO:0008146||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function sulfotransferase activity|GO:0008146||ISS  product sulfotransferase family protein  note sulfotransferase family protein; FUNCTIONS IN: sulfotransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, sepal, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Sulfotransferase (InterPro:IPR000863); BEST Arabidopsis thaliana protein match is: sulfotransferase family protein (TAIR:AT3G45070.1); Has 2120 Blast hits to 2093 proteins in 143 species: Archae - 0; Bacteria - 141; Metazoa - 1429; Fungi - 1; Plants - 305; Viruses - 0; Other Eukaryotes - 244 (source: NCBI BLink).  protein_id AT4G26280.1p  transcript_id AT4G26280.1  protein_id AT4G26280.1p  transcript_id AT4G26280.1  
At4g26290	chr4:013307595	0.0	C/13307595-13307822	AT4G26290.1  CDS  gene_syn T25K17.100, T25K17_100  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 10 Blast hits to 10 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G26290.1p  transcript_id AT4G26290.1  protein_id AT4G26290.1p  transcript_id AT4G26290.1  
At4g26288	chr4:013307623	0.0	W/13307623-13307840,13307968-13308217	AT4G26288.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: OXS3 (OXIDATIVE STRESS 3) (TAIR:AT5G56550.1); Has 272 Blast hits to 170 proteins in 34 species: Archae - 0; Bacteria - 10; Metazoa - 90; Fungi - 21; Plants - 81; Viruses - 2; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT4G26288.1p  transcript_id AT4G26288.1  protein_id AT4G26288.1p  transcript_id AT4G26288.1  
At4g26300	chr4:013313020	0.0	C/13313020-13313109,13312196-13312270,13311970-13312109,13311797-13311872,13311617-13311718,13311312-13311527,13311124-13311204,13310911-13310994,13310693-13310797,13310414-13310592,13310159-13310243,13309869-13310055,13309694-13309763,13309442-13309511,13309271-13309360,13308817-13308885,13308624-13308722,13308400-13308510	AT4G26300.1  CDS  gene_syn T25K17.110, T25K17_110, emb1027, embryo defective 1027  gene emb1027  go_component chloroplast|GO:0009507|18431481|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function arginine-tRNA ligase activity|GO:0004814||IEA  go_function ATP binding|GO:0005524||IEA  go_component mitochondrion|GO:0005739|16251277|IDA  go_component chloroplast|GO:0009507|16251277|IDA  go_process arginyl-tRNA aminoacylation|GO:0006420||ISS  go_process embryonic development ending in seed dormancy|GO:0009793|16297076|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function arginine-tRNA ligase activity|GO:0004814||ISS  go_function ATP binding|GO:0005524||ISS  product emb1027 (embryo defective 1027); ATP binding / aminoacyl-tRNA ligase/ arginine-tRNA ligase/ nucleotide binding  note embryo defective 1027 (emb1027); FUNCTIONS IN: nucleotide binding, aminoacyl-tRNA ligase activity, arginine-tRNA ligase activity, ATP binding; INVOLVED IN: embryonic development ending in seed dormancy, arginyl-tRNA aminoacylation; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), DALR anticodon binding (InterPro:IPR008909), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Arginyl-tRNA synthetase, class Ic, core (InterPro:IPR015945), Arginyl tRNA synthetase, class Ic, N-terminal (InterPro:IPR005148), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Arginyl-tRNA synthetase, class Ic (InterPro:IPR001278); BEST Arabidopsis thaliana protein match is: arginyl-tRNA synthetase, putative / arginine--tRNA ligase, putative (TAIR:AT1G66530.1); Has 6567 Blast hits to 6509 proteins in 1604 species: Archae - 158; Bacteria - 2984; Metazoa - 245; Fungi - 116; Plants - 37; Viruses - 3; Other Eukaryotes - 3024 (source: NCBI BLink).  protein_id AT4G26300.1p  transcript_id AT4G26300.1  protein_id AT4G26300.1p  transcript_id AT4G26300.1  
At4g26310	chr4:013315836	0.0	C/13315836-13316066,13315665-13315695,13315563-13315576,13315420-13315470,13315234-13315303,13315015-13315081,13314838-13314905,13314526-13314649,13314309-13314348,13314116-13314183,13314006-13314018	AT4G26310.1  CDS  gene_syn T25K17.120, T25K17_120  go_process translational elongation|GO:0006414||IEA  go_function translation elongation factor activity|GO:0003746||IEA  go_process translational elongation|GO:0006414||ISS  go_function translation elongation factor activity|GO:0003746||ISS  product elongation factor P (EF-P) family protein  note elongation factor P (EF-P) family protein; FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor P/YeiP, conserved site (InterPro:IPR013852), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Translation elongation factor, KOW-like (InterPro:IPR013185), Translation protein SH3-like, subgroup (InterPro:IPR014722), Elongation factor P, C-terminal (InterPro:IPR015365), Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Translation elongation factor P/YeiP, central (InterPro:IPR001059); BEST Arabidopsis thaliana protein match is: elongation factor P (EF-P) family protein (TAIR:AT3G08740.1); Has 6706 Blast hits to 6706 proteins in 1428 species: Archae - 6; Bacteria - 4287; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 2373 (source: NCBI BLink).  protein_id AT4G26310.1p  transcript_id AT4G26310.1  protein_id AT4G26310.1p  transcript_id AT4G26310.1  
At4g26320	chr4:013317235	0.0	C/13317235-13317414	AT4G26320.1  CDS  gene_syn AGP13, T25K17.130, T25K17_130, arabinogalactan protein 13  gene AGP13  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  product AGP13 (arabinogalactan protein 13)  note arabinogalactan protein 13 (AGP13); LOCATED IN: anchored to membrane; EXPRESSED IN: inflorescence meristem, hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; Has 32 Blast hits to 32 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G26320.1p  transcript_id AT4G26320.1  protein_id AT4G26320.1p  transcript_id AT4G26320.1  
At4g26330	chr4:013320408	0.0	W/13320408-13320543,13320730-13320895,13320939-13321647,13321752-13321819,13321957-13322205,13322306-13322420,13322582-13322795,13322878-13323461	AT4G26330.1  CDS  gene_syn ATSBT3.18, T25K17.140, T25K17_140, UNE17, UNFERTILIZED EMBRYO SAC 17  gene UNE17  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_component cytoplasm|GO:0005737||IDA  go_component peroxisome|GO:0005777||TAS  go_process proteolysis|GO:0006508||ISS  go_process double fertilization forming a zygote and endosperm|GO:0009567|15634699|IMP  product UNE17 (UNFERTILIZED EMBRYO SAC 17); identical protein binding / serine-type endopeptidase  note UNFERTILIZED EMBRYO SAC 17 (UNE17); FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, double fertilization forming a zygote and endosperm; LOCATED IN: peroxisome, cytoplasm; EXPRESSED IN: male gametophyte, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT4G10520.1); Has 3156 Blast hits to 2999 proteins in 506 species: Archae - 104; Bacteria - 1593; Metazoa - 35; Fungi - 161; Plants - 859; Viruses - 0; Other Eukaryotes - 404 (source: NCBI BLink).  protein_id AT4G26330.1p  transcript_id AT4G26330.1  protein_id AT4G26330.1p  transcript_id AT4G26330.1  
At4g26340	chr4:013324130	0.0	W/13324130-13324966,13325051-13325185,13325272-13325559	AT4G26340.1  CDS  gene_syn T25K17.150, T25K17_150  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G26350.1); Has 1372 Blast hits to 1337 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 34; Fungi - 0; Plants - 1338; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G26340.1p  transcript_id AT4G26340.1  protein_id AT4G26340.1p  transcript_id AT4G26340.1  
At4g26350	chr4:013326853	0.0	W/13326853-13327719,13327799-13327933,13328022-13328315	AT4G26350.1  CDS  gene_syn T25K17.160, T25K17_160  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G26340.1); Has 1241 Blast hits to 1197 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 0; Plants - 1228; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G26350.1p  transcript_id AT4G26350.1  protein_id AT4G26350.1p  transcript_id AT4G26350.1  
At4g26360	chr4:013328763	0.0	C/13328763-13332375	AT4G26360.1  mRNA_TE_gene  pseudo  gene_syn T25K17.1  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 4.9e-40 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At4g26365	chr4:013332834	0.0	C/13332834-13332911	AT4G26365.1  snoRNA  gene_syn 67159.SNORNA00001, 67160.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT4G26365.1  
At4g26370	chr4:013335840	0.0	C/13335840-13336153,13335379-13335455,13334887-13335213,13334766-13334794	AT4G26370.2  CDS  gene_syn T25K17.4  go_component chloroplast|GO:0009507|18431481|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function RNA binding|GO:0003723||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function RNA binding|GO:0003723||ISS  product antitermination NusB domain-containing protein  note antitermination NusB domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NusB/RsmB/TIM44 (InterPro:IPR006027); Has 20 Blast hits to 20 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G26370.2p  transcript_id AT4G26370.2  protein_id AT4G26370.2p  transcript_id AT4G26370.2  
At4g26370	chr4:013335840	0.0	C/13335840-13336153,13335379-13335455,13335079-13335213,13334887-13334941,13334707-13334794,13334338-13334436,13334099-13334236	AT4G26370.1  CDS  gene_syn T25K17.4  go_component chloroplast|GO:0009507|18431481|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function RNA binding|GO:0003723||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function RNA binding|GO:0003723||ISS  product antitermination NusB domain-containing protein  note antitermination NusB domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NusB/RsmB/TIM44 (InterPro:IPR006027); Has 299 Blast hits to 299 proteins in 120 species: Archae - 0; Bacteria - 232; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT4G26370.1p  transcript_id AT4G26370.1  protein_id AT4G26370.1p  transcript_id AT4G26370.1  
At4g26375	chr4:013336337	0.0	C/13336337-13336410	AT4G26375.1  tRNA  gene_syn 67159.TRNA-ILE-1, 67160.TRNA-ILE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ile (anticodon: AAT)  transcript_id AT4G26375.1  
At4g26380	chr4:013338078	0.0	W/13338078-13341034,13341467-13341560	AT4G26380.1  CDS  gene_syn T25K17.2  go_process intracellular signaling cascade|GO:0007242||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular signaling cascade; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Zinc finger, RING-type (InterPro:IPR001841), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT5G03360.1); Has 1331 Blast hits to 556 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 37; Fungi - 8; Plants - 1259; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT4G26380.1p  transcript_id AT4G26380.1  protein_id AT4G26380.1p  transcript_id AT4G26380.1  
At4g26385	chr4:013341493	0.0	C/13341493-13341566	AT4G26385.1  tRNA  gene_syn 67159.TRNA-ILE-2, 67160.TRNA-ILE-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ile (anticodon: AAT)  transcript_id AT4G26385.1  
At4g26390	chr4:013342207	0.0	W/13342207-13342425,13343057-13343518,13343606-13344418	AT4G26390.1  CDS  gene_syn T25K17.3  go_process glycolysis|GO:0006096||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function catalytic activity|GO:0003824||IEA  go_function pyruvate kinase activity|GO:0004743||IEA  go_function potassium ion binding|GO:0030955||IEA  go_component cellular_component|GO:0005575||ND  go_process glycolysis|GO:0006096||ISS  go_function pyruvate kinase activity|GO:0004743||ISS  product pyruvate kinase, putative  note pyruvate kinase, putative; FUNCTIONS IN: pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity; INVOLVED IN: glycolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, leaf whorl, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Pyruvate kinase, C-terminal-like (InterPro:IPR015795), Pyruvate kinase, active site (InterPro:IPR018209), Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), Pyruvate kinase, alpha/beta (InterPro:IPR015794), Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate kinase (InterPro:IPR001697), Pyruvate kinase, barrel (InterPro:IPR015793); BEST Arabidopsis thaliana protein match is: pyruvate kinase, putative (TAIR:AT5G56350.1); Has 6846 Blast hits to 6778 proteins in 1522 species: Archae - 99; Bacteria - 3247; Metazoa - 491; Fungi - 170; Plants - 283; Viruses - 0; Other Eukaryotes - 2556 (source: NCBI BLink).  protein_id AT4G26390.1p  transcript_id AT4G26390.1  protein_id AT4G26390.1p  transcript_id AT4G26390.1  
At4g26400	chr4:013344953	0.0	C/13344953-13346023	AT4G26400.1  CDS  gene_syn M3E9.170, M3E9_170  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process response to chitin|GO:0010200|17722694|IEP  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: response to chitin; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G56340.1); Has 7059 Blast hits to 7033 proteins in 227 species: Archae - 0; Bacteria - 6; Metazoa - 2361; Fungi - 631; Plants - 2786; Viruses - 51; Other Eukaryotes - 1224 (source: NCBI BLink).  protein_id AT4G26400.1p  transcript_id AT4G26400.1  protein_id AT4G26400.1p  transcript_id AT4G26400.1  
At4g26400	chr4:013344953	0.0	C/13344953-13346023	AT4G26400.2  CDS  gene_syn M3E9.170, M3E9_170  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process response to chitin|GO:0010200|17722694|IEP  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: response to chitin; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G56340.1); Has 7059 Blast hits to 7033 proteins in 227 species: Archae - 0; Bacteria - 6; Metazoa - 2361; Fungi - 631; Plants - 2786; Viruses - 51; Other Eukaryotes - 1224 (source: NCBI BLink).  protein_id AT4G26400.2p  transcript_id AT4G26400.2  protein_id AT4G26400.2p  transcript_id AT4G26400.2  
At4g26410	chr4:013346760	0.0	W/13346760-13347002,13347495-13347561,13347778-13347855,13347988-13348040,13348153-13348289,13348377-13348441,13348557-13348615,13348702-13348791	AT4G26410.1  CDS  gene_syn M3E9.160, M3E9_160  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP022280 (InterPro:IPR016803); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45060.1); Has 47 Blast hits to 47 proteins in 12 species: Archae - 3; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 40; Viruses - 1; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G26410.1p  transcript_id AT4G26410.1  protein_id AT4G26410.1p  transcript_id AT4G26410.1  
At4g26420	chr4:013352005	0.0	C/13352005-13352451,13351343-13351630,13351202-13351264	AT4G26420.2  CDS  gene_syn GAMT1, M3E9.150, M3E9_150  gene GAMT1  function A member of the Arabidopsis SABATH methyltransferase gene family. Encodes GAMT1, a methyltransferase that uses S-adenosine-L-methionine (SAM) as a methyl donor to methylate the carboxyl group of GAs, resulting in the methyl esters of GAs (MeGAs). Expressed most highly in the siliques during seed development.  go_component cellular_component|GO:0005575||ND  go_process seed germination|GO:0009845|17220201|IEP  go_process seed development|GO:0048316|17220201|IEP  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757|17220201|IDA  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757||ISS  go_function gibberellin carboxyl-O-methyltransferase activity|GO:0010341|17220201|IDA  product GAMT1; S-adenosylmethionine-dependent methyltransferase/ gibberellin carboxyl-O-methyltransferase  note GAMT1; FUNCTIONS IN: gibberellin carboxyl-O-methyltransferase activity, S-adenosylmethionine-dependent methyltransferase activity; INVOLVED IN: seed development, seed germination; LOCATED IN: cellular_component unknown; EXPRESSED IN: fruit, anther; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: GAMT2 (GIBBERELLIC ACID METHYLTRANSFERASE 2); S-adenosylmethionine-dependent methyltransferase/ gibberellin carboxyl-O-methyltransferase (TAIR:AT5G56300.1); Has 542 Blast hits to 539 proteins in 87 species: Archae - 0; Bacteria - 32; Metazoa - 10; Fungi - 1; Plants - 410; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT4G26420.2p  transcript_id AT4G26420.2  protein_id AT4G26420.2p  transcript_id AT4G26420.2  
At4g26420	chr4:013352005	0.0	C/13352005-13352487,13351343-13351630,13350895-13351254	AT4G26420.1  CDS  gene_syn GAMT1, M3E9.150, M3E9_150  gene GAMT1  function A member of the Arabidopsis SABATH methyltransferase gene family. Encodes GAMT1, a methyltransferase that uses S-adenosine-L-methionine (SAM) as a methyl donor to methylate the carboxyl group of GAs, resulting in the methyl esters of GAs (MeGAs). Expressed most highly in the siliques during seed development.  go_component cellular_component|GO:0005575||ND  go_process seed germination|GO:0009845|17220201|IEP  go_process seed development|GO:0048316|17220201|IEP  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757|17220201|IDA  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757||ISS  go_function gibberellin carboxyl-O-methyltransferase activity|GO:0010341|17220201|IDA  product GAMT1; S-adenosylmethionine-dependent methyltransferase/ gibberellin carboxyl-O-methyltransferase  note GAMT1; FUNCTIONS IN: gibberellin carboxyl-O-methyltransferase activity, S-adenosylmethionine-dependent methyltransferase activity; INVOLVED IN: seed development, seed germination; LOCATED IN: cellular_component unknown; EXPRESSED IN: fruit, anther; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: GAMT2 (GIBBERELLIC ACID METHYLTRANSFERASE 2); S-adenosylmethionine-dependent methyltransferase/ gibberellin carboxyl-O-methyltransferase (TAIR:AT5G56300.1); Has 613 Blast hits to 608 proteins in 97 species: Archae - 0; Bacteria - 51; Metazoa - 10; Fungi - 1; Plants - 440; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).  protein_id AT4G26420.1p  transcript_id AT4G26420.1  protein_id AT4G26420.1p  transcript_id AT4G26420.1  
At4g26430	chr4:013355229	0.0	W/13355229-13355526,13355607-13355695,13355783-13355876,13355972-13356033,13356124-13356202,13356294-13356386,13356577-13356677,13356807-13356862,13357245-13357326	AT4G26430.1  CDS  gene_syn CSN6B, M3E9.140, M3E9_140  gene CSN6B  function one of two genes encoding subunit 6 of COP9 signalosome complex  go_component signalosome|GO:0008180|9707402|IPI  go_process protein deneddylation|GO:0000338|9707402|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11701877|ISS  go_process multicellular organismal development|GO:0007275|11701877|ISS  go_process signalosome assembly|GO:0010387|17307927|IMP  go_function molecular_function|GO:0003674||ND  product CSN6B  note CSN6B; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: multicellular organismal development, signalosome assembly, protein deneddylation, ubiquitin-dependent protein catabolic process; LOCATED IN: signalosome; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: CSN6A (TAIR:AT5G56280.1); Has 737 Blast hits to 735 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 336; Fungi - 173; Plants - 129; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).  protein_id AT4G26430.1p  transcript_id AT4G26430.1  protein_id AT4G26430.1p  transcript_id AT4G26430.1  
At4g26440	chr4:013359233	0.0	C/13359233-13359550,13358450-13359147,13358204-13358362,13357596-13358127	AT4G26440.1  CDS  gene_syn ATWRKY34, M3E9.130, M3E9_130, MICROSPORE-SPECIFIC PROMOTER 3, MSP3, WRKY DNA-BINDING PROTEIN 34, WRKY34  gene WRKY34  function member of WRKY Transcription Factor; Group I  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY34 (WRKY DNA-BINDING PROTEIN 34); transcription factor  note WRKY DNA-BINDING PROTEIN 34 (WRKY34); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: flower, pollen tube; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY2; transcription factor (TAIR:AT5G56270.1); Has 3318 Blast hits to 1737 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3293; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT4G26440.1p  transcript_id AT4G26440.1  protein_id AT4G26440.1p  transcript_id AT4G26440.1  
At4g26450	chr4:013362556	0.0	W/13362556-13364393,13364474-13364627,13364703-13364781,13364865-13364920	AT4G26450.1  CDS  gene_syn M3E9.120, M3E9_120, WIP1, WPP-DOMAIN INTERACTING PROTEIN 1  product unknown protein  note unknown protein; Has 2630 Blast hits to 1931 proteins in 274 species: Archae - 42; Bacteria - 240; Metazoa - 1048; Fungi - 174; Plants - 110; Viruses - 15; Other Eukaryotes - 1001 (source: NCBI BLink).  protein_id AT4G26450.1p  transcript_id AT4G26450.1  protein_id AT4G26450.1p  transcript_id AT4G26450.1  
At4g26455	chr4:013365737	0.0	W/13365737-13366619,13366798-13367384	AT4G26455.1  CDS  gene_syn WIP1, WPP-DOMAIN INTERACTING PROTEIN 1  gene WIP1  go_component nuclear envelope|GO:0005635|17600715|IDA  go_component cell plate|GO:0009504|17600715|IDA  go_function protein homodimerization activity|GO:0042803|17600715|IPI  go_function protein heterodimerization activity|GO:0046982|17600715|IPI  product WIP1 (WPP-DOMAIN INTERACTING PROTEIN 1); protein heterodimerization/ protein homodimerization  note WPP-DOMAIN INTERACTING PROTEIN 1 (WIP1); FUNCTIONS IN: protein heterodimerization activity, protein homodimerization activity; LOCATED IN: nuclear envelope, cell plate; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: WIP2 (WPP-domain Interacting Protein 2); protein heterodimerization/ protein homodimerization (TAIR:AT5G56210.1).  protein_id AT4G26455.1p  transcript_id AT4G26455.1  protein_id AT4G26455.1p  transcript_id AT4G26455.1  
At4g26466	chr4:013368557	0.0	C/13368557-13368629,13368423-13368482,13367645-13368009	AT4G26466.1  CDS  gene_syn LORELEI, LRE  gene LRE  function Encodes a membrane localized (putative GPI-anchored) protein involved in fertilization. Loss of function mutations display defects in fertilization-around 25% of embryo sacs abort.  go_component plasma membrane|GO:0005886|19028964|IDA  go_process double fertilization forming a zygote and endosperm|GO:0009567|19028964|IMP  go_process pollen tube guidance|GO:0010183|19028964|IMP  product LRE (LORELEI)  note LORELEI (LRE); INVOLVED IN: pollen tube guidance, double fertilization forming a zygote and endosperm; LOCATED IN: plasma membrane; EXPRESSED IN: synergid; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56170.1); Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G26466.1p  transcript_id AT4G26466.1  protein_id AT4G26466.1p  transcript_id AT4G26466.1  
At4g26460	chr4:013369590	0.0	W/13369590-13369784,13369859-13370011	AT4G26460.1  CDS  gene_syn M3E9.110, M3E9_110  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; BEST Arabidopsis thaliana protein match is: GAMT1; S-adenosylmethionine-dependent methyltransferase/ gibberellin carboxyl-O-methyltransferase (TAIR:AT4G26420.2); Has 40 Blast hits to 39 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G26460.1p  transcript_id AT4G26460.1  protein_id AT4G26460.1p  transcript_id AT4G26460.1  
At4g26470	chr4:013371377	0.0	W/13371377-13371575,13371654-13371856,13371964-13372132,13372219-13372343	AT4G26470.1  CDS  gene_syn M3E9.100, M3E9_100  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium ion binding  note calcium ion binding; FUNCTIONS IN: calcium ion binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT3G24110.1); Has 7395 Blast hits to 5971 proteins in 883 species: Archae - 0; Bacteria - 19; Metazoa - 3242; Fungi - 939; Plants - 2057; Viruses - 0; Other Eukaryotes - 1138 (source: NCBI BLink).  protein_id AT4G26470.1p  transcript_id AT4G26470.1  protein_id AT4G26470.1p  transcript_id AT4G26470.1  
At4g26470	chr4:013371377	0.0	W/13371377-13371575,13371654-13371856,13371964-13372197	AT4G26470.2  CDS  gene_syn M3E9.100, M3E9_100  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium ion binding  note calcium ion binding; FUNCTIONS IN: calcium ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT3G24110.1); Has 5042 Blast hits to 4011 proteins in 767 species: Archae - 0; Bacteria - 19; Metazoa - 1945; Fungi - 800; Plants - 1681; Viruses - 0; Other Eukaryotes - 597 (source: NCBI BLink).  protein_id AT4G26470.2p  transcript_id AT4G26470.2  protein_id AT4G26470.2p  transcript_id AT4G26470.2  
At4g26480	chr4:013378357	0.0	C/13378357-13378390,13378052-13378256,13377720-13377961,13376734-13376906,13376179-13376236,13375615-13375822,13374883-13374968,13374133-13374272,13373542-13373655,13373350-13373466,13373124-13373267,13372885-13373031	AT4G26480.1  CDS  gene_syn M3E9.90, M3E9_90  go_process nicotianamine biosynthetic process|GO:0030418||IEA  go_function RNA binding|GO:0003723||IEA  go_function nicotianamine synthase activity|GO:0030410||IEA  go_component cellular_component|GO:0005575||ND  go_function nucleic acid binding|GO:0003676||ISS  product KH domain-containing protein  note KH domain-containing protein; FUNCTIONS IN: nicotianamine synthase activity, RNA binding, nucleic acid binding; INVOLVED IN: nicotianamine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nicotianamine synthase (InterPro:IPR004298), K Homology (InterPro:IPR004087); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT5G56140.1); Has 1336 Blast hits to 1328 proteins in 177 species: Archae - 0; Bacteria - 13; Metazoa - 793; Fungi - 183; Plants - 254; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT4G26480.1p  transcript_id AT4G26480.1  protein_id AT4G26480.1p  transcript_id AT4G26480.1  
At4g26488	chr4:013380345	0.0	C/13380345-13381625	AT4G26488.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT4G26490  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G26488.1  
At4g26490	chr4:013380425	0.0	W/13380425-13381231	AT4G26490.1  CDS  gene_syn M3E9.80, M3E9_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56050.1); Has 263 Blast hits to 263 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 263; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G26490.1p  transcript_id AT4G26490.1  protein_id AT4G26490.1p  transcript_id AT4G26490.1  
At4g26500	chr4:013382456	0.0	C/13382456-13383571	AT4G26500.1  CDS  gene_syn ARABIDOPSIS THALIANA SULFUR E, ATSUFE, CHLOROPLAST SULFUR E, CPSUFE, EMB1374, M3E9.70, M3E9_70, MBRYO DEFECTIVE 1374, SUFE1, SULFUR E 1  gene CPSUFE  function Sulfur acceptor that interacts with and activates the cysteine desulfurases, AtSufS in plastids and AtNifS1 in mitochondria, and both activations are vital during embryogenesis. Dual localization in mitochondria and chloroplasts. Involved in Fe-S cluster biogenesis in mitochondria and plastids. Expressed in all major tissues, with higher expression in green parts. Its expression is light-dependent and regulated at the mRNA level. Activates the cysteine desulfurase activity of CpNifS for chloroplastic iron-sulfur cluster biogenesis.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component mitochondrion|GO:0005739|16437155|IDA  go_component chloroplast|GO:0009507|16437155|IDA  go_component chloroplast stroma|GO:0009570|16455656|IDA  go_process embryonic development ending in seed dormancy|GO:0009793|16437155|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process iron-sulfur cluster assembly|GO:0016226|16437155|IGI  go_function enzyme activator activity|GO:0008047|16437155|IDA  go_function enzyme activator activity|GO:0008047|16437155|IGI  go_function transcription regulator activity|GO:0030528||ISS  product CPSUFE (CHLOROPLAST SULFUR E); enzyme activator/ transcription regulator  note CHLOROPLAST SULFUR E (CPSUFE); FUNCTIONS IN: enzyme activator activity, transcription regulator activity; INVOLVED IN: embryonic development ending in seed dormancy, iron-sulfur cluster assembly; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fe-S metabolism associated SufE (InterPro:IPR003808), BolA-like protein (InterPro:IPR002634); BEST Arabidopsis thaliana protein match is: BolA-like family protein (TAIR:AT1G55805.1); Has 5349 Blast hits to 5349 proteins in 938 species: Archae - 12; Bacteria - 2903; Metazoa - 175; Fungi - 104; Plants - 115; Viruses - 0; Other Eukaryotes - 2040 (source: NCBI BLink).  protein_id AT4G26500.1p  transcript_id AT4G26500.1  protein_id AT4G26500.1p  transcript_id AT4G26500.1  
At4g26510	chr4:013384503	0.0	W/13384503-13384659,13384762-13384853,13385142-13385211,13385543-13385655,13385862-13385958,13386134-13386213,13386397-13386591,13386677-13386760,13386852-13386912,13387033-13387093,13387196-13387289,13387361-13387433,13387571-13387653,13387771-13387920	AT4G26510.1  CDS  gene_syn M3E9.60, M3E9_60  go_process metabolic process|GO:0008152||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||IEA  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_component cellular_component|GO:0005575||ND  go_process biosynthetic process|GO:0009058||ISS  go_function uracil phosphoribosyltransferase activity|GO:0004845||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product ATP binding / kinase/ phosphotransferase, alcohol group as acceptor / uracil phosphoribosyltransferase  note ATP binding / kinase/ phosphotransferase, alcohol group as acceptor / uracil phosphoribosyltransferase; FUNCTIONS IN: uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding; INVOLVED IN: biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083), Uridine kinase (InterPro:IPR000764); BEST Arabidopsis thaliana protein match is: uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative (TAIR:AT1G55810.3); Has 5945 Blast hits to 5938 proteins in 1378 species: Archae - 124; Bacteria - 3772; Metazoa - 440; Fungi - 309; Plants - 350; Viruses - 2; Other Eukaryotes - 948 (source: NCBI BLink).  protein_id AT4G26510.1p  transcript_id AT4G26510.1  protein_id AT4G26510.1p  transcript_id AT4G26510.1  
At4g26510	chr4:013384503	0.0	W/13384503-13384659,13384762-13384853,13385142-13385211,13385543-13385655,13385862-13385958,13386134-13386213,13386397-13386591,13386677-13386760,13386852-13386912,13387033-13387093,13387196-13387289,13387361-13387433,13387571-13387653,13387771-13387920	AT4G26510.2  CDS  gene_syn M3E9.60, M3E9_60  go_process metabolic process|GO:0008152||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||IEA  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_component cellular_component|GO:0005575||ND  go_process biosynthetic process|GO:0009058||ISS  go_function uracil phosphoribosyltransferase activity|GO:0004845||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product ATP binding / kinase/ phosphotransferase, alcohol group as acceptor / uracil phosphoribosyltransferase  note ATP binding / kinase/ phosphotransferase, alcohol group as acceptor / uracil phosphoribosyltransferase; FUNCTIONS IN: uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding; INVOLVED IN: biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083), Uridine kinase (InterPro:IPR000764); BEST Arabidopsis thaliana protein match is: uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative (TAIR:AT1G55810.3); Has 5945 Blast hits to 5938 proteins in 1378 species: Archae - 124; Bacteria - 3772; Metazoa - 440; Fungi - 309; Plants - 350; Viruses - 2; Other Eukaryotes - 948 (source: NCBI BLink).  protein_id AT4G26510.2p  transcript_id AT4G26510.2  protein_id AT4G26510.2p  transcript_id AT4G26510.2  
At4g26520	chr4:013388676	0.0	W/13388676-13388703,13388784-13389037,13389170-13389598,13389826-13390191	AT4G26520.1  CDS  gene_syn M3E9.50, M3E9_50  go_process response to hypoxia|GO:0001666|15734912|IEP  go_process pentose-phosphate shunt|GO:0006098||TAS  go_function fructose-bisphosphate aldolase activity|GO:0004332|16797112|NAS  product fructose-bisphosphate aldolase, cytoplasmic  note fructose-bisphosphate aldolase, cytoplasmic; FUNCTIONS IN: fructose-bisphosphate aldolase activity; INVOLVED IN: pentose-phosphate shunt, response to hypoxia; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741); BEST Arabidopsis thaliana protein match is: fructose-bisphosphate aldolase, putative (TAIR:AT4G26530.2); Has 4378 Blast hits to 4373 proteins in 736 species: Archae - 0; Bacteria - 421; Metazoa - 1256; Fungi - 2; Plants - 338; Viruses - 0; Other Eukaryotes - 2361 (source: NCBI BLink).  protein_id AT4G26520.1p  transcript_id AT4G26520.1  protein_id AT4G26520.1p  transcript_id AT4G26520.1  
At4g26530	chr4:013391566	0.0	W/13391566-13391593,13391673-13391926,13392043-13392471,13392572-13392937	AT4G26530.1  CDS  gene_syn M3E9.40, M3E9_40  go_component chloroplast|GO:0009507|15028209|IDA  go_process glycolysis|GO:0006096||IEA  go_process metabolic process|GO:0008152||IEA  go_process glycolysis|GO:0006096||ISS  go_function fructose-bisphosphate aldolase activity|GO:0004332|16797112|NAS  go_function fructose-bisphosphate aldolase activity|GO:0004332||ISS  product fructose-bisphosphate aldolase, putative  note fructose-bisphosphate aldolase, putative; FUNCTIONS IN: fructose-bisphosphate aldolase activity; INVOLVED IN: glycolysis, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741); BEST Arabidopsis thaliana protein match is: fructose-bisphosphate aldolase, cytoplasmic (TAIR:AT4G26520.1); Has 4438 Blast hits to 4433 proteins in 746 species: Archae - 0; Bacteria - 439; Metazoa - 1258; Fungi - 2; Plants - 339; Viruses - 0; Other Eukaryotes - 2400 (source: NCBI BLink).  protein_id AT4G26530.1p  transcript_id AT4G26530.1  protein_id AT4G26530.1p  transcript_id AT4G26530.1  
At4g26530	chr4:013391566	0.0	W/13391566-13391593,13391673-13391926,13392043-13392471,13392572-13392937	AT4G26530.2  CDS  gene_syn M3E9.40, M3E9_40  go_process glycolysis|GO:0006096||IEA  go_process metabolic process|GO:0008152||IEA  go_process glycolysis|GO:0006096||ISS  go_function fructose-bisphosphate aldolase activity|GO:0004332|16797112|NAS  go_function fructose-bisphosphate aldolase activity|GO:0004332||ISS  product fructose-bisphosphate aldolase, putative  note fructose-bisphosphate aldolase, putative; FUNCTIONS IN: fructose-bisphosphate aldolase activity; INVOLVED IN: glycolysis, metabolic process; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741); BEST Arabidopsis thaliana protein match is: fructose-bisphosphate aldolase, cytoplasmic (TAIR:AT4G26520.1); Has 4438 Blast hits to 4433 proteins in 746 species: Archae - 0; Bacteria - 439; Metazoa - 1258; Fungi - 2; Plants - 339; Viruses - 0; Other Eukaryotes - 2400 (source: NCBI BLink).  protein_id AT4G26530.2p  transcript_id AT4G26530.2  protein_id AT4G26530.2p  transcript_id AT4G26530.2  
At4g26540	chr4:013395220	0.0	C/13395220-13398028,13394673-13395139	AT4G26540.1  CDS  gene_syn M3E9.30, M3E9_30  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product kinase  note kinase; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: inflorescence meristem; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT5G56040.2); Has 146520 Blast hits to 84763 proteins in 2645 species: Archae - 97; Bacteria - 13340; Metazoa - 56291; Fungi - 5522; Plants - 53478; Viruses - 285; Other Eukaryotes - 17507 (source: NCBI BLink).  protein_id AT4G26540.1p  transcript_id AT4G26540.1  protein_id AT4G26540.1p  transcript_id AT4G26540.1  
At4g26550	chr4:013404015	0.0	C/13404015-13404208,13403435-13403702,13403238-13403342,13402755-13402865	AT4G26550.1  CDS  gene_syn T15N24.12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SFT2-like (InterPro:IPR011691); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56020.1); Has 452 Blast hits to 452 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 198; Fungi - 89; Plants - 61; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT4G26550.1p  transcript_id AT4G26550.1  protein_id AT4G26550.1p  transcript_id AT4G26550.1  
At4g26555	chr4:013406123	0.0	C/13406123-13406178,13405844-13406026,13405431-13405465,13405230-13405323,13405079-13405139,13404952-13404997,13404789-13404859,13404622-13404699	AT4G26555.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process protein folding|GO:0006457||IEA  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  go_function FK506 binding|GO:0005528||ISS  product immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein  note immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT4G19830.1); Has 2159 Blast hits to 2148 proteins in 673 species: Archae - 12; Bacteria - 1209; Metazoa - 160; Fungi - 145; Plants - 239; Viruses - 0; Other Eukaryotes - 394 (source: NCBI BLink).  protein_id AT4G26555.1p  transcript_id AT4G26555.1  protein_id AT4G26555.1p  transcript_id AT4G26555.1  
At4g26560	chr4:013407851	0.0	C/13407851-13407973,13407733-13407780,13407562-13407621,13407378-13407486,13407121-13407254,13406894-13407006,13406733-13406790	AT4G26560.1  CDS  gene_syn CALCINEURIN B-LIKE 7, CBL7, T15N24.10  gene CBL7  function Encodes calcineurin B-like protein 7 (CBL7).  go_component cellular_component|GO:0005575||ND  go_process detection of calcium ion|GO:0005513|11230129|ISS  go_function calcium ion binding|GO:0005509|11230129|ISS  go_function calcium ion binding|GO:0005509||ISS  product CBL7 (CALCINEURIN B-LIKE 7); calcium ion binding  note CALCINEURIN B-LIKE 7 (CBL7); FUNCTIONS IN: calcium ion binding; INVOLVED IN: detection of calcium ion; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), Recoverin (InterPro:IPR001125), Calcineurin B protein (InterPro:IPR015757), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: ATCBL3 (ARABIDOPSIS THALIANA CALCINEURIN B-LIKE 3); calcium ion binding (TAIR:AT4G26570.1); Has 2815 Blast hits to 2810 proteins in 212 species: Archae - 0; Bacteria - 6; Metazoa - 2041; Fungi - 203; Plants - 298; Viruses - 0; Other Eukaryotes - 267 (source: NCBI BLink).  protein_id AT4G26560.1p  transcript_id AT4G26560.1  protein_id AT4G26560.1p  transcript_id AT4G26560.1  
At4g26570	chr4:013409875	0.0	C/13409875-13409998,13409627-13409709,13409442-13409501,13409247-13409355,13408993-13409126,13408763-13408875,13408608-13408665	AT4G26570.1  CDS  gene_syn ARABIDOPSIS THALIANA CALCINEURIN B-LIKE 3, ATCBL3, CALCINEURIN B-LIKE 3, CBL3, T15N24.20, T15N24_20  gene ATCBL3  function member of AtCBLs (Calcineurin B-like Calcium Sensor Proteins)  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process detection of calcium ion|GO:0005513|10200328|ISS  go_function calcium ion binding|GO:0005509|10200328|ISS  product ATCBL3 (ARABIDOPSIS THALIANA CALCINEURIN B-LIKE 3); calcium ion binding  note ARABIDOPSIS THALIANA CALCINEURIN B-LIKE 3 (ATCBL3); FUNCTIONS IN: calcium ion binding; INVOLVED IN: detection of calcium ion; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Calcineurin B protein (InterPro:IPR015757), EF-HAND 2 (InterPro:IPR018249), Recoverin (InterPro:IPR001125), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: CBL2 (CALCINEURIN B-LIKE 2); calcium ion binding (TAIR:AT5G55990.1); Has 6584 Blast hits to 6568 proteins in 726 species: Archae - 0; Bacteria - 10; Metazoa - 3517; Fungi - 968; Plants - 1246; Viruses - 0; Other Eukaryotes - 843 (source: NCBI BLink).  protein_id AT4G26570.1p  transcript_id AT4G26570.1  protein_id AT4G26570.1p  transcript_id AT4G26570.1  
At4g26570	chr4:013409875	0.0	C/13409875-13409998,13409627-13409709,13409442-13409501,13409247-13409367,13408993-13409126,13408763-13408875,13408608-13408665	AT4G26570.2  CDS  gene_syn ARABIDOPSIS THALIANA CALCINEURIN B-LIKE 3, ATCBL3, CALCINEURIN B-LIKE 3, CBL3, T15N24.20, T15N24_20  gene ATCBL3  function member of AtCBLs (Calcineurin B-like Calcium Sensor Proteins)  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process detection of calcium ion|GO:0005513|10200328|ISS  go_function calcium ion binding|GO:0005509|10200328|ISS  product ATCBL3 (ARABIDOPSIS THALIANA CALCINEURIN B-LIKE 3); calcium ion binding  note ARABIDOPSIS THALIANA CALCINEURIN B-LIKE 3 (ATCBL3); FUNCTIONS IN: calcium ion binding; INVOLVED IN: detection of calcium ion; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Recoverin (InterPro:IPR001125), EF-HAND 2 (InterPro:IPR018249), Calcineurin B protein (InterPro:IPR015757), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: CBL2 (CALCINEURIN B-LIKE 2); calcium ion binding (TAIR:AT5G55990.1); Has 6352 Blast hits to 6335 proteins in 705 species: Archae - 0; Bacteria - 10; Metazoa - 3355; Fungi - 964; Plants - 1250; Viruses - 0; Other Eukaryotes - 773 (source: NCBI BLink).  protein_id AT4G26570.2p  transcript_id AT4G26570.2  protein_id AT4G26570.2p  transcript_id AT4G26570.2  
At4g26580	chr4:013412387	0.0	C/13412387-13412889,13411942-13412299,13411705-13411851	AT4G26580.1  CDS  gene_syn T15N24.30, T15N24_30  go_component chloroplast|GO:0009507||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G55970.2); Has 6288 Blast hits to 6271 proteins in 212 species: Archae - 0; Bacteria - 0; Metazoa - 2100; Fungi - 434; Plants - 2661; Viruses - 25; Other Eukaryotes - 1068 (source: NCBI BLink).  protein_id AT4G26580.1p  transcript_id AT4G26580.1  protein_id AT4G26580.1p  transcript_id AT4G26580.1  
At4g26590	chr4:013416784	0.0	C/13416784-13416850,13416147-13416598,13415967-13416064,13415325-13415897,13414134-13415205	AT4G26590.1  CDS  gene_syn ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, ATOPT5, OLIGOPEPTIDE TRANSPORTER 5, OPT5, T15N24.40, T15N24_40  gene OPT5  function oligopeptide transporter  go_component membrane|GO:0016020|11788749|ISS  go_process oligopeptide transport|GO:0006857|11788749|IGI  go_function oligopeptide transporter activity|GO:0015198|11788749|IGI  go_function oligopeptide transporter activity|GO:0015198||ISS  product OPT5 (OLIGOPEPTIDE TRANSPORTER 5); oligopeptide transporter  note OLIGOPEPTIDE TRANSPORTER 5 (OPT5); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Tetrapeptide transporter, OPT1/isp4 (InterPro:IPR004648), Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: OPT1 (OLIGOPEPTIDE TRANSPORTER 1); oligopeptide transporter (TAIR:AT5G55930.1); Has 732 Blast hits to 716 proteins in 74 species: Archae - 0; Bacteria - 18; Metazoa - 0; Fungi - 552; Plants - 157; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G26590.1p  transcript_id AT4G26590.1  protein_id AT4G26590.1p  transcript_id AT4G26590.1  
At4g26600	chr4:013419629	0.0	W/13419629-13420168,13420265-13420328,13420458-13420597,13420700-13420783,13420875-13420949,13421039-13421110,13421204-13421277,13421523-13421575,13421658-13421767,13421971-13422039,13422125-13422199,13422370-13422462,13422556-13422635,13422714-13422813,13422928-13423253,13423358-13423418	AT4G26600.1  CDS  gene_syn T15N24.50, T15N24_50  go_component nucleolus|GO:0005730|15496452|IDA  go_process rRNA processing|GO:0006364||IEA  go_function RNA binding|GO:0003723||IEA  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757||IEA  go_component nucleolus|GO:0005730||ISS  product nucleolar protein, putative  note nucleolar protein, putative; FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, RNA binding; INVOLVED IN: rRNA processing; LOCATED IN: nucleolus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678), Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site (InterPro:IPR018314), Nop2p (InterPro:IPR011023); BEST Arabidopsis thaliana protein match is: nucleolar protein, putative (TAIR:AT5G55920.1); Has 58475 Blast hits to 25518 proteins in 1706 species: Archae - 305; Bacteria - 24540; Metazoa - 13109; Fungi - 5777; Plants - 1987; Viruses - 583; Other Eukaryotes - 12174 (source: NCBI BLink).  protein_id AT4G26600.1p  transcript_id AT4G26600.1  protein_id AT4G26600.1p  transcript_id AT4G26600.1  
At4g26610	chr4:013425568	0.0	W/13425568-13426244,13426345-13427188	AT4G26610.1  CDS  gene_syn AGC1-2, D6 PROTEIN KINASE LIKE 1, D6PKL1, T15N24.60, T15N24_60  gene D6PKL1  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product D6PKL1 (D6 PROTEIN KINASE LIKE 1); kinase  note D6 PROTEIN KINASE LIKE 1 (D6PKL1); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: D6PK (D6 PROTEIN KINASE); kinase/ protein kinase (TAIR:AT5G55910.1); Has 79755 Blast hits to 61216 proteins in 1906 species: Archae - 15; Bacteria - 7080; Metazoa - 36105; Fungi - 8322; Plants - 10461; Viruses - 332; Other Eukaryotes - 17440 (source: NCBI BLink).  protein_id AT4G26610.1p  transcript_id AT4G26610.1  protein_id AT4G26610.1p  transcript_id AT4G26610.1  
At4g26620	chr4:013429500	0.0	C/13429500-13429877,13428918-13429003,13428505-13428810,13428172-13428255,13427599-13428076	AT4G26620.1  CDS  gene_syn T15N24.70, T15N24_70  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product sucrase-related  note sucrase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Sucraseferredoxin-like (InterPro:IPR009737), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: sucrase-related (TAIR:AT5G55900.1); Has 297 Blast hits to 297 proteins in 97 species: Archae - 6; Bacteria - 46; Metazoa - 0; Fungi - 172; Plants - 40; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT4G26620.1p  transcript_id AT4G26620.1  protein_id AT4G26620.1p  transcript_id AT4G26620.1  
At4g26630	chr4:013433843	0.0	C/13433843-13434877,13433734-13433767,13433220-13433302,13432990-13433049,13432800-13432910,13432508-13432600,13432342-13432425,13431669-13432167,13431381-13431472,13431130-13431160,13430873-13431042	AT4G26630.1  CDS  gene_syn T15N24.80, T15N24_80  product unknown protein  note EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55660.1); Has 253164 Blast hits to 95130 proteins in 2571 species: Archae - 852; Bacteria - 27744; Metazoa - 108483; Fungi - 29060; Plants - 10256; Viruses - 1718; Other Eukaryotes - 75051 (source: NCBI BLink).  protein_id AT4G26630.1p  transcript_id AT4G26630.1  protein_id AT4G26630.1p  transcript_id AT4G26630.1  
At4g26630	chr4:013433843	0.0	C/13433843-13434877,13433734-13433767,13433220-13433302,13432990-13433049,13432800-13432910,13432508-13432600,13432342-13432425,13431669-13432167,13431381-13431472,13431130-13431160,13430873-13431042	AT4G26630.2  CDS  gene_syn T15N24.80, T15N24_80  product unknown protein  note EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55660.1); Has 253164 Blast hits to 95130 proteins in 2571 species: Archae - 852; Bacteria - 27744; Metazoa - 108483; Fungi - 29060; Plants - 10256; Viruses - 1718; Other Eukaryotes - 75051 (source: NCBI BLink).  protein_id AT4G26630.2p  transcript_id AT4G26630.2  protein_id AT4G26630.2p  transcript_id AT4G26630.2  
At4g26640	chr4:013439763	0.0	C/13439763-13439774,13439318-13439473,13438521-13439025,13438274-13438430,13438034-13438189,13437298-13437769	AT4G26640.1  CDS  gene_syn AtWRKY20, T15N24.90, T15N24_90, WRKY20  gene WRKY20  function member of WRKY Transcription Factor; Group I  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY20; transcription factor  note WRKY20; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY3; transcription factor (TAIR:AT2G03340.1); Has 3302 Blast hits to 1755 proteins in 110 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 2; Plants - 3268; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT4G26640.1p  transcript_id AT4G26640.1  protein_id AT4G26640.1p  transcript_id AT4G26640.1  
At4g26640	chr4:013440466	0.0	C/13440466-13440693,13439318-13439473,13438521-13439025,13438274-13438430,13438034-13438189,13437298-13437769	AT4G26640.2  CDS  gene_syn AtWRKY20, T15N24.90, T15N24_90, WRKY20  gene WRKY20  function member of WRKY Transcription Factor; Group I  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY20; transcription factor  note WRKY20; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY2; transcription factor (TAIR:AT5G56270.1); Has 3338 Blast hits to 1778 proteins in 119 species: Archae - 0; Bacteria - 8; Metazoa - 8; Fungi - 5; Plants - 3263; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT4G26640.2p  transcript_id AT4G26640.2  protein_id AT4G26640.2p  transcript_id AT4G26640.2  
At4g26650	chr4:013445265	0.0	W/13445265-13445267,13445737-13445973,13446377-13447481,13447579-13447592	AT4G26650.2  CDS  gene_syn T15N24.100, T15N24_100  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT5G55550.1); Has 25232 Blast hits to 16340 proteins in 690 species: Archae - 6; Bacteria - 2271; Metazoa - 13602; Fungi - 2435; Plants - 3812; Viruses - 13; Other Eukaryotes - 3093 (source: NCBI BLink).  protein_id AT4G26650.2p  transcript_id AT4G26650.2  protein_id AT4G26650.2p  transcript_id AT4G26650.2  
At4g26650	chr4:013445552	0.0	W/13445552-13445563,13445737-13445973,13446377-13447481,13447579-13447592	AT4G26650.1  CDS  gene_syn T15N24.100, T15N24_100  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT5G55550.1); Has 25649 Blast hits to 16415 proteins in 691 species: Archae - 6; Bacteria - 2273; Metazoa - 13928; Fungi - 2461; Plants - 3829; Viruses - 13; Other Eukaryotes - 3139 (source: NCBI BLink).  protein_id AT4G26650.1p  transcript_id AT4G26650.1  protein_id AT4G26650.1p  transcript_id AT4G26650.1  
At4g26660	chr4:013448754	0.0	W/13448754-13449011,13449135-13449305,13449424-13450281,13450380-13450466,13450674-13451441,13451536-13451814	AT4G26660.1  CDS  gene_syn T15N24.110, T15N24_110  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin-related (InterPro:IPR010544); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55520.2); Has 17522 Blast hits to 11235 proteins in 728 species: Archae - 194; Bacteria - 1012; Metazoa - 10222; Fungi - 1306; Plants - 509; Viruses - 22; Other Eukaryotes - 4257 (source: NCBI BLink).  protein_id AT4G26660.1p  transcript_id AT4G26660.1  protein_id AT4G26660.1p  transcript_id AT4G26660.1  
At4g26670	chr4:013452257	0.0	W/13452257-13452458,13452848-13452912,13452993-13453065,13453167-13453220,13453341-13453579	AT4G26670.1  CDS  gene_syn F10M23.10, F10M23_10  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_process protein transport|GO:0015031||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744||ISS  go_process protein transport|GO:0015031||ISS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein  note mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein; FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: chloroplast, mitochondrial inner membrane presequence translocase complex, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial import inner membrane translocase, subunit Tim17/22 (InterPro:IPR003397); BEST Arabidopsis thaliana protein match is: P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter (TAIR:AT5G55510.1); Has 467 Blast hits to 467 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 219; Fungi - 144; Plants - 82; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT4G26670.1p  transcript_id AT4G26670.1  protein_id AT4G26670.1p  transcript_id AT4G26670.1  
At4g26675	chr4:013454557	0.0	W/13454557-13454629	AT4G26675.1  tRNA  gene_syn 67161.TRNA-ALA-1, 67162.TRNA-ALA-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: AGC)  transcript_id AT4G26675.1  
At4g26680	chr4:013454853	0.0	W/13454853-13456418	AT4G26680.1  CDS  gene_syn F10M23.20, F10M23_20  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT1G05670.2); Has 20492 Blast hits to 5772 proteins in 184 species: Archae - 3; Bacteria - 18; Metazoa - 582; Fungi - 387; Plants - 18654; Viruses - 0; Other Eukaryotes - 848 (source: NCBI BLink).  protein_id AT4G26680.1p  transcript_id AT4G26680.1  protein_id AT4G26680.1p  transcript_id AT4G26680.1  
At4g26690	chr4:013459770	0.0	C/13459770-13459890,13459302-13459595,13458609-13459226,13458475-13458513,13458098-13458382,13457755-13457897,13457171-13457654,13456793-13457088	AT4G26690.1  CDS  gene_syn F10M23.30, F10M23_30, GLYCEROPHOSPHODIESTERASE-LIKE 2, GPDL2, MRH5, MUTANT ROOT HAIR 5, SHAVEN 3, SHV3  gene SHV3  function Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component anchored to plasma membrane|GO:0046658|12805588|IDA  go_component plasma membrane|GO:0005886|18718934|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process glycerol metabolic process|GO:0006071||ISS  go_process cell tip growth|GO:0009932|11041890|IMP  go_process trichome differentiation|GO:0010026|18718934|IGI  go_process root epidermal cell differentiation|GO:0010053|11041890|IMP  go_process guard cell morphogenesis|GO:0010442|18718934|IGI  go_process root hair cell differentiation|GO:0048765|16367956|IMP  go_process plant-type cell wall cellulose metabolic process|GO:0052541|18718934|IGI  go_process cell wall pectin metabolic process|GO:0052546|18718934|IGI  go_function glycerophosphodiester phosphodiesterase activity|GO:0008889||ISS  go_function kinase activity|GO:0016301||ISS  product SHV3 (SHAVEN 3); glycerophosphodiester phosphodiesterase/ kinase  note SHAVEN 3 (SHV3); FUNCTIONS IN: kinase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: in 8 processes; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane, plant-type cell wall; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: SVL2 (SHV3-LIKE 2); glycerophosphodiester phosphodiesterase/ kinase (TAIR:AT1G66970.1); Has 968 Blast hits to 644 proteins in 221 species: Archae - 0; Bacteria - 709; Metazoa - 10; Fungi - 0; Plants - 190; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT4G26690.1p  transcript_id AT4G26690.1  protein_id AT4G26690.1p  transcript_id AT4G26690.1  
At4g26700	chr4:013463760	0.0	W/13463760-13463846,13463920-13464090,13464190-13464431,13464517-13464688,13464801-13464839,13464921-13464989,13465070-13465186,13465474-13465685,13465959-13466111,13466253-13466452,13466551-13466708,13466808-13466904,13466999-13467090,13467172-13467426	AT4G26700.1  CDS  gene_syn ATFIM1, F10M23.40, F10M23_40, FIMBRIN-LIKE PROTEIN  gene ATFIM1  function fimbrin-like protein  go_function actin binding|GO:0003779||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function actin binding|GO:0003779||ISS  product ATFIM1; actin binding  note ATFIM1; FUNCTIONS IN: actin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actinin-type, actin-binding, conserved site (InterPro:IPR001589), Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715); BEST Arabidopsis thaliana protein match is: fimbrin-like protein, putative (TAIR:AT5G55400.1); Has 3004 Blast hits to 2139 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 2488; Fungi - 212; Plants - 74; Viruses - 0; Other Eukaryotes - 230 (source: NCBI BLink).  protein_id AT4G26700.1p  transcript_id AT4G26700.1  protein_id AT4G26700.1p  transcript_id AT4G26700.1  
At4g26700	chr4:013463760	0.0	W/13463760-13463846,13463920-13464090,13464190-13464431,13464517-13464688,13464801-13464839,13464921-13464989,13465070-13465186,13465474-13465685,13465959-13466111,13466253-13466452,13466551-13466708,13466808-13466904,13466999-13467090,13467172-13467426	AT4G26700.2  CDS  gene_syn ATFIM1, F10M23.40, F10M23_40, FIMBRIN-LIKE PROTEIN  gene ATFIM1  function fimbrin-like protein  go_function actin binding|GO:0003779||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function actin binding|GO:0003779||ISS  product ATFIM1; actin binding  note ATFIM1; FUNCTIONS IN: actin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actinin-type, actin-binding, conserved site (InterPro:IPR001589), Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715); BEST Arabidopsis thaliana protein match is: fimbrin-like protein, putative (TAIR:AT5G55400.1); Has 3004 Blast hits to 2139 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 2488; Fungi - 212; Plants - 74; Viruses - 0; Other Eukaryotes - 230 (source: NCBI BLink).  protein_id AT4G26700.2p  transcript_id AT4G26700.2  protein_id AT4G26700.2p  transcript_id AT4G26700.2  
At4g26700	chr4:013463760	0.0	W/13463760-13463846,13463920-13464090,13464190-13464431,13464517-13464688,13464801-13464839,13464921-13464989,13465070-13465186,13465474-13465685,13465959-13466111,13466253-13466452,13466551-13466708,13466808-13466927	AT4G26700.3  CDS  gene_syn ATFIM1, F10M23.40, F10M23_40, FIMBRIN-LIKE PROTEIN  gene ATFIM1  function fimbrin-like protein  go_function actin binding|GO:0003779||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function actin binding|GO:0003779||ISS  product ATFIM1; actin binding  note ATFIM1; FUNCTIONS IN: actin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actinin-type, actin-binding, conserved site (InterPro:IPR001589), Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715); BEST Arabidopsis thaliana protein match is: fimbrin-like protein, putative (TAIR:AT5G55400.1); Has 2943 Blast hits to 2106 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 2371; Fungi - 236; Plants - 114; Viruses - 0; Other Eukaryotes - 222 (source: NCBI BLink).  protein_id AT4G26700.3p  transcript_id AT4G26700.3  protein_id AT4G26700.3p  transcript_id AT4G26700.3  
At4g26701	chr4:013467746	0.0	W/13467746-13467886,13467987-13468055	AT4G26701.1  CDS  go_component chromosome|GO:0005694||IEA  go_process DNA topological change|GO:0006265||IEA  go_process DNA unwinding during replication|GO:0006268||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA topoisomerase type I activity|GO:0003917||IEA  product DNA binding / DNA topoisomerase type I  note DNA binding / DNA topoisomerase type I; FUNCTIONS IN: DNA topoisomerase type I activity, DNA binding; INVOLVED IN: DNA topological change, DNA unwinding during replication; LOCATED IN: chromosome; CONTAINS InterPro DOMAIN/s: DNA breaking-rejoining enzyme, catalytic core (InterPro:IPR011010), DNA topoisomerase I, active site (InterPro:IPR018521), DNA topoisomerase I, catalytic core, alpha/beta subdomain, eukaryotic-type (InterPro:IPR014727); BEST Arabidopsis thaliana protein match is: TOP1BETA (DNA TOPOISOMERASE 1 BETA); DNA topoisomerase type I (TAIR:AT5G55310.1); Has 413 Blast hits to 413 proteins in 181 species: Archae - 6; Bacteria - 0; Metazoa - 194; Fungi - 93; Plants - 40; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT4G26701.1p  transcript_id AT4G26701.1  protein_id AT4G26701.1p  transcript_id AT4G26701.1  
At4g26710	chr4:013468705	0.0	W/13468705-13468802,13469153-13469200,13469602-13469668	AT4G26710.1  CDS  gene_syn F10M23.50, F10M23_50  go_component vacuole|GO:0005773|15215502|IDA  go_process ATP hydrolysis coupled proton transport|GO:0015991||IEA  go_function hydrogen ion transmembrane transporter activity|GO:0015078||IEA  product ATP synthase subunit H family protein  note ATP synthase subunit H family protein; FUNCTIONS IN: hydrogen ion transmembrane transporter activity; INVOLVED IN: ATP hydrolysis coupled proton transport; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, V0 complex, subunit E (InterPro:IPR008389); BEST Arabidopsis thaliana protein match is: ATP synthase subunit H family protein (TAIR:AT5G55290.2); Has 250 Blast hits to 250 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 183; Fungi - 12; Plants - 36; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT4G26710.1p  transcript_id AT4G26710.1  protein_id AT4G26710.1p  transcript_id AT4G26710.1  
At4g26710	chr4:013468705	0.0	W/13468705-13468802,13469153-13469200,13469602-13469668	AT4G26710.2  CDS  gene_syn F10M23.50, F10M23_50  go_process ATP hydrolysis coupled proton transport|GO:0015991||IEA  go_function hydrogen ion transmembrane transporter activity|GO:0015078||IEA  product ATP synthase subunit H family protein  note ATP synthase subunit H family protein; FUNCTIONS IN: hydrogen ion transmembrane transporter activity; INVOLVED IN: ATP hydrolysis coupled proton transport; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, V0 complex, subunit E (InterPro:IPR008389); BEST Arabidopsis thaliana protein match is: ATP synthase subunit H family protein (TAIR:AT5G55290.2); Has 250 Blast hits to 250 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 183; Fungi - 12; Plants - 36; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT4G26710.2p  transcript_id AT4G26710.2  protein_id AT4G26710.2p  transcript_id AT4G26710.2  
At4g26720	chr4:013472014	0.0	C/13472014-13472154,13471552-13471704,13471379-13471441,13471215-13471300,13471051-13471126,13470699-13470967,13470530-13470608,13470397-13470447	AT4G26720.1  CDS  gene_syn F10M23.60, F10M23_60, PPX-1, PPX1, PROTEIN PHOSPHATASE X 1, PROTEIN PHOSPHATASE X-1  gene PPX1  function Encodes catalytic subunit of protein phosphatase X. Expressed at very low levels in A. thaliana flowers, leaves, stems and roots.  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722|8292782|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PPX1 (PROTEIN PHOSPHATASE X 1); protein serine/threonine phosphatase  note PROTEIN PHOSPHATASE X 1 (PPX1); FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: PPX2 (PROTEIN PHOSPHATASE X 2); protein serine/threonine phosphatase (TAIR:AT5G55260.1); Has 5197 Blast hits to 5070 proteins in 319 species: Archae - 49; Bacteria - 53; Metazoa - 2046; Fungi - 934; Plants - 603; Viruses - 3; Other Eukaryotes - 1509 (source: NCBI BLink).  protein_id AT4G26720.1p  transcript_id AT4G26720.1  protein_id AT4G26720.1p  transcript_id AT4G26720.1  
At4g26730	chr4:013472579	0.0	W/13472579-13472650,13472755-13473309	AT4G26730.1  CDS  gene_syn F10M23.70, F10M23_70  go_process metabolic process|GO:0008152||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  product methyltransferase  note methyltransferase; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: methyltransferase (TAIR:AT2G16030.1); Has 122 Blast hits to 122 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 106; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT4G26730.1p  transcript_id AT4G26730.1  protein_id AT4G26730.1p  transcript_id AT4G26730.1  
At4g26740	chr4:013475161	0.0	C/13475161-13475278,13474690-13474839,13474515-13474600,13474296-13474390,13474080-13474205,13473791-13473953	AT4G26740.1  CDS  gene_syn ARABIDOPSIS THALIANA SEED GENE 1, ATS1, F10M23.80, F10M23_80  gene ATS1  function Gene is expressed preferentially in the embryo, has similarity to a rice ABA-responsive gene, EFA27.  go_component cellular_component|GO:0005575||ND  go_process response to abscisic acid stimulus|GO:0009737|10380802|NAS  go_process embryonic development ending in seed dormancy|GO:0009793|10380802|TAS  go_function calcium ion binding|GO:0005509||ISS  product ATS1 (ARABIDOPSIS THALIANA SEED GENE 1); calcium ion binding  note ARABIDOPSIS THALIANA SEED GENE 1 (ATS1); FUNCTIONS IN: calcium ion binding; INVOLVED IN: embryonic development ending in seed dormancy, response to abscisic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: caleosin-related family protein / embryo-specific protein, putative (TAIR:AT5G55240.1); Has 227 Blast hits to 222 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 46; Plants - 178; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G26740.1p  transcript_id AT4G26740.1  protein_id AT4G26740.1p  transcript_id AT4G26740.1  
At4g26750	chr4:013478289	0.0	C/13478289-13478382,13478103-13478203,13477694-13477803,13477103-13477178,13476859-13477002,13475848-13476588	AT4G26750.1  CDS  gene_syn F10M23.90, F10M23_90  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF605 (InterPro:IPR006745); BEST Arabidopsis thaliana protein match is: ATGSL11 (glucan synthase-like 11); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups (TAIR:AT3G59100.1); Has 27093 Blast hits to 16071 proteins in 790 species: Archae - 16; Bacteria - 1458; Metazoa - 10297; Fungi - 5609; Plants - 4452; Viruses - 743; Other Eukaryotes - 4518 (source: NCBI BLink).  protein_id AT4G26750.1p  transcript_id AT4G26750.1  protein_id AT4G26750.1p  transcript_id AT4G26750.1  
At4g26760	chr4:013481229	0.0	C/13481229-13481300,13480952-13481155,13480622-13480867,13480330-13480545,13480012-13480167,13479623-13479934,13479442-13479529,13479205-13479353,13478834-13479127	AT4G26760.1  CDS  gene_syn F10M23.100, F10M23_100, MAP65-2  gene MAP65-2  go_component phragmoplast|GO:0009524|19060108|IDA  go_component preprophase band|GO:0009574|19060108|IDA  go_component cortical microtubule|GO:0055028|19060108|IDA  go_process anaphase|GO:0051322|19060108|IDA  go_function molecular_function|GO:0003674||ND  product MAP65-2  note MAP65-2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaphase; LOCATED IN: cortical microtubule, preprophase band, phragmoplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MAP65/ASE1 (InterPro:IPR007145); BEST Arabidopsis thaliana protein match is: ATMAP65-1 (MICROTUBULE-ASSOCIATED PROTEINS 65-1); microtubule binding (TAIR:AT5G55230.1); Has 7158 Blast hits to 5289 proteins in 462 species: Archae - 120; Bacteria - 495; Metazoa - 4190; Fungi - 430; Plants - 357; Viruses - 13; Other Eukaryotes - 1553 (source: NCBI BLink).  protein_id AT4G26760.1p  transcript_id AT4G26760.1  protein_id AT4G26760.1p  transcript_id AT4G26760.1  
At4g26770	chr4:013482580	0.0	W/13482580-13482786,13482859-13483273,13483349-13483490,13483565-13483721,13483813-13483860,13483938-13484024,13484113-13484241,13484325-13484381,13484457-13484540,13484608-13484697	AT4G26770.1  CDS  gene_syn F10M23.110, F10M23_110  go_component membrane|GO:0016020||IEA  go_process phospholipid biosynthetic process|GO:0008654||IEA  go_function transferase activity, transferring phosphorus-containing groups|GO:0016772||IEA  go_function phosphatidate cytidylyltransferase activity|GO:0004605||ISS  product phosphatidate cytidylyltransferase/ transferase, transferring phosphorus-containing groups  note phosphatidate cytidylyltransferase/ transferase, transferring phosphorus-containing groups; FUNCTIONS IN: phosphatidate cytidylyltransferase activity, transferase activity, transferring phosphorus-containing groups; INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: leaf whorl, petal, flower, pollen tube; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Phosphatidate cytidylyltransferase (InterPro:IPR000374), Phosphatidate cytidylyltransferase, eukaryota (InterPro:IPR016720); BEST Arabidopsis thaliana protein match is: ATCDS1; phosphatidate cytidylyltransferase (TAIR:AT1G62430.1); Has 4529 Blast hits to 4526 proteins in 1369 species: Archae - 0; Bacteria - 2581; Metazoa - 161; Fungi - 91; Plants - 81; Viruses - 0; Other Eukaryotes - 1615 (source: NCBI BLink).  protein_id AT4G26770.1p  transcript_id AT4G26770.1  protein_id AT4G26770.1p  transcript_id AT4G26770.1  
At4g26780	chr4:013486417	0.0	C/13486417-13486560,13485720-13486163,13485468-13485635,13485260-13485388,13485066-13485164	AT4G26780.1  CDS  gene_syn AR192, F10M23.120, F10M23_120  gene AR192  function unknown function  go_process protein folding|GO:0006457||IEA  go_function adenyl-nucleotide exchange factor activity|GO:0000774||IEA  go_function protein binding|GO:0005515||IEA  go_function protein homodimerization activity|GO:0042803||IEA  go_function chaperone binding|GO:0051087||IEA  go_process protein folding|GO:0006457||ISS  product AR192; adenyl-nucleotide exchange factor/ chaperone binding / protein binding / protein homodimerization  note AR192; FUNCTIONS IN: protein binding, adenyl-nucleotide exchange factor activity, chaperone binding, protein homodimerization activity; INVOLVED IN: protein folding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GrpE nucleotide exchange factor (InterPro:IPR000740), GrpE nucleotide exchange factor, head (InterPro:IPR009012), GrpE nucleotide exchange factor, coiled-coil (InterPro:IPR013805); BEST Arabidopsis thaliana protein match is: co-chaperone grpE protein, putative (TAIR:AT5G55200.1); Has 7320 Blast hits to 7046 proteins in 1586 species: Archae - 76; Bacteria - 2924; Metazoa - 653; Fungi - 395; Plants - 150; Viruses - 8; Other Eukaryotes - 3114 (source: NCBI BLink).  protein_id AT4G26780.1p  transcript_id AT4G26780.1  protein_id AT4G26780.1p  transcript_id AT4G26780.1  
At4g26795	chr4:013487209	0.0	C/13487209-13489601	AT4G26795.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT4G26790  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G26795.2  
At4g26795	chr4:013487392	0.0	C/13487392-13489565	AT4G26795.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT4G26790  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G26795.1  
At4g26790	chr4:013487859	0.0	W/13487859-13488230,13488333-13488822,13488956-13489149	AT4G26790.1  CDS  gene_syn F10M23.130, F10M23_130  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT2G42990.1); Has 1896 Blast hits to 1877 proteins in 187 species: Archae - 0; Bacteria - 289; Metazoa - 1; Fungi - 19; Plants - 1570; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT4G26790.1p  transcript_id AT4G26790.1  protein_id AT4G26790.1p  transcript_id AT4G26790.1  
At4g26790	chr4:013487859	0.0	W/13487859-13488230,13488333-13488822,13488956-13489149	AT4G26790.2  CDS  gene_syn F10M23.130, F10M23_130  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT2G42990.1); Has 1896 Blast hits to 1877 proteins in 187 species: Archae - 0; Bacteria - 289; Metazoa - 1; Fungi - 19; Plants - 1570; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT4G26790.2p  transcript_id AT4G26790.2  protein_id AT4G26790.2p  transcript_id AT4G26790.2  
At4g26800	chr4:013490251	0.0	W/13490251-13490259,13490358-13491458	AT4G26800.1  CDS  gene_syn F10M23.140, F10M23_140  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62680.1); Has 24656 Blast hits to 5788 proteins in 181 species: Archae - 5; Bacteria - 18; Metazoa - 547; Fungi - 350; Plants - 22846; Viruses - 0; Other Eukaryotes - 890 (source: NCBI BLink).  protein_id AT4G26800.1p  transcript_id AT4G26800.1  protein_id AT4G26800.1p  transcript_id AT4G26800.1  
At4g26810	chr4:013492476	0.0	C/13492476-13492649,13492247-13492393	AT4G26810.1  CDS  gene_syn F10M23.150, F10M23_150  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SWIB complex BAF60b domain-containing protein  note SWIB complex BAF60b domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 (InterPro:IPR003121); BEST Arabidopsis thaliana protein match is: SWIB complex BAF60b domain-containing protein (TAIR:AT2G35605.1); Has 460 Blast hits to 430 proteins in 125 species: Archae - 0; Bacteria - 127; Metazoa - 42; Fungi - 76; Plants - 165; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT4G26810.1p  transcript_id AT4G26810.1  protein_id AT4G26810.1p  transcript_id AT4G26810.1  
At4g26810	chr4:013492476	0.0	C/13492476-13492649,13492247-13492393	AT4G26810.2  CDS  gene_syn F10M23.150, F10M23_150  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SWIB complex BAF60b domain-containing protein  note SWIB complex BAF60b domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 (InterPro:IPR003121); BEST Arabidopsis thaliana protein match is: SWIB complex BAF60b domain-containing protein (TAIR:AT2G35605.1); Has 460 Blast hits to 430 proteins in 125 species: Archae - 0; Bacteria - 127; Metazoa - 42; Fungi - 76; Plants - 165; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT4G26810.2p  transcript_id AT4G26810.2  protein_id AT4G26810.2p  transcript_id AT4G26810.2  
At4g26820	chr4:013493453	0.0	C/13493453-13494181	AT4G26820.1  CDS  gene_syn F10M23.160, F10M23_160  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G26820.1p  transcript_id AT4G26820.1  protein_id AT4G26820.1p  transcript_id AT4G26820.1  
At4g26830	chr4:013496427	0.0	C/13496427-13496487,13495055-13496326,13494726-13494760	AT4G26830.1  CDS  gene_syn F10M23.170, F10M23_170  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT5G55180.1); Has 1768 Blast hits to 1708 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 7; Plants - 1756; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G26830.1p  transcript_id AT4G26830.1  protein_id AT4G26830.1p  transcript_id AT4G26830.1  
At4g26840	chr4:013497466	0.0	W/13497466-13497540,13498150-13498299,13498381-13498458	AT4G26840.1  CDS  gene_syn ATSUMO1, F10M23.180, F10M23_180, SMALL UBIQUITIN-LIKE MODIFIER 1, SUM1, SUMO 1, SUMO1  gene SUMO1  function Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets.  go_component nucleus|GO:0005634|12482876|IDA  go_component nucleus|GO:0005634|17644626|IDA  go_component cytoplasm|GO:0005737|12482876|IDA  go_component cytoplasm|GO:0005737|17644626|IDA  go_process response to heat|GO:0009408|17644626|IEP  go_process protein sumoylation|GO:0016925|12482876|IEP  go_function protein binding|GO:0005515|12482876|ISS  go_function protein tag|GO:0031386|16740136|IDA  product SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1); protein binding / protein tag  note SMALL UBIQUITIN-LIKE MODIFIER 1 (SUMO1); FUNCTIONS IN: protein binding, protein tag; INVOLVED IN: protein sumoylation, response to heat; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2); protein binding / protein tag (TAIR:AT5G55160.1); Has 843 Blast hits to 843 proteins in 172 species: Archae - 0; Bacteria - 0; Metazoa - 516; Fungi - 101; Plants - 133; Viruses - 1; Other Eukaryotes - 92 (source: NCBI BLink).  protein_id AT4G26840.1p  transcript_id AT4G26840.1  protein_id AT4G26840.1p  transcript_id AT4G26840.1  
At4g26850	chr4:013501034	0.0	C/13501034-13501145,13500827-13500945,13500685-13500744,13500329-13500571,13500049-13500234,13499705-13499953,13499262-13499621	AT4G26850.1  CDS  gene_syn F10M23.190, F10M23_190, VTC2, vitamin c defective 2  gene VTC2  function Encodes a novel protein involved in ascorbate biosynthesis, which was shown to catalyze the transfer of GMP from GDP-galactose to a variety of hexose-1-phosphate acceptors. Recessive mutation has a reduced amount of vitamin C, lower level of non-photochemical quenching, and reduced rate of conversion of violaxanthin to zeaxanthin in high light.  go_component cellular_component|GO:0005575||ND  go_process response to heat|GO:0009408|15923322|IMP  go_process response to jasmonic acid stimulus|GO:0009753|16262714|IEP  go_process L-ascorbic acid biosynthetic process|GO:0019853|11891252|IMP  go_process defense response to bacterium|GO:0042742|16244149|IMP  go_process defense response to bacterium|GO:0042742|19095898|IMP  go_process callose deposition in cell wall during defense response|GO:0052544|19095898|IMP  go_function mannose-1-phosphate guanylyltransferase (GDP) activity|GO:0008928|17462988|IDA  go_function GDP-galactose:mannose-1-phosphate guanyltransferase activity|GO:0010471|17485667|IDA  go_function GDP-galactose:glucose-1-phosphate guanyltransferase activity|GO:0010472|17485667|IDA  go_function GDP-galactose:myoinositol-1-phosphate guanyltransferase activity|GO:0010473|17485667|IDA  go_function glucose-1-phosphate guanylyltransferase (GDP) activity|GO:0010474|17462988|IDA  go_function galactose-1-phosphate guanylyltransferase (GDP) activity|GO:0010475|17462988|IDA  go_function quercetin 4 -O-glucosyltransferase activity|GO:0080046|18463094|IDA  go_function GDP-D-glucose phosphorylase activity|GO:0080048|18463094|IDA  product VTC2 (vitamin c defective 2); GDP-D-glucose phosphorylase/ GDP-galactose:glucose-1-phosphate guanyltransferase/ GDP-galactose:mannose-1-phosphate guanyltransferase/ GDP-galactose:myoinositol-1-phosphate guanyltransferase/ galactose-1-phosphate guanylyltransferase (GDP)/ glucose-1-phosphate guanylyltransferase (GDP)/ mannose-1-phosphate guanylyltransferase (GDP)/ quercetin 4 -O-glucosyltransferase  note vitamin c defective 2 (VTC2); FUNCTIONS IN: in 8 functions; INVOLVED IN: response to jasmonic acid stimulus, L-ascorbic acid biosynthetic process, defense response to bacterium, response to heat, callose deposition in cell wall during defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: VTC5 (VITAMIN C DEFECTIVE 5); GDP-D-glucose phosphorylase/ galactose-1-phosphate guanylyltransferase (GDP)/ quercetin 4 -O-glucosyltransferase (TAIR:AT5G55120.1); Has 166 Blast hits to 166 proteins in 61 species: Archae - 0; Bacteria - 2; Metazoa - 101; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT4G26850.1p  transcript_id AT4G26850.1  protein_id AT4G26850.1p  transcript_id AT4G26850.1  
At4g26860	chr4:013504472	0.0	C/13504472-13504693,13504226-13504292,13504101-13504147,13503909-13503996,13503701-13503834,13503501-13503599,13503291-13503368	AT4G26860.1  CDS  gene_syn F10M23.200, F10M23_200  go_process biological_process|GO:0008150||ND  go_function pyridoxal phosphate binding|GO:0030170||ISS  product pyridoxal phosphate binding  note pyridoxal phosphate binding; FUNCTIONS IN: pyridoxal phosphate binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (InterPro:IPR011078), Alanine racemase, N-terminal (InterPro:IPR001608); BEST Arabidopsis thaliana protein match is: alanine racemase family protein (TAIR:AT1G11930.2); Has 5001 Blast hits to 5001 proteins in 1281 species: Archae - 14; Bacteria - 2219; Metazoa - 109; Fungi - 88; Plants - 34; Viruses - 0; Other Eukaryotes - 2537 (source: NCBI BLink).  protein_id AT4G26860.1p  transcript_id AT4G26860.1  protein_id AT4G26860.1p  transcript_id AT4G26860.1  
At4g26870	chr4:013505381	0.0	W/13505381-13505860,13505928-13506038,13506111-13506224,13506336-13506626,13506700-13506810,13506890-13506943,13507019-13507214,13507301-13507415,13507493-13507619	AT4G26870.1  CDS  gene_syn F10M23.210, F10M23_210  go_component cytoplasm|GO:0005737||IEA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function aspartate-tRNA ligase activity|GO:0004815||IEA  go_function ATP binding|GO:0005524||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||ISS  go_function aspartate-tRNA ligase activity|GO:0004815||ISS  product aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative  note aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative; FUNCTIONS IN: aspartate-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, nucleic acid binding, ATP binding; INVOLVED IN: response to cadmium ion, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aspartyl-tRNA synthetase, class IIb, archea/euk type (InterPro:IPR004523), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Aminoacyl-tRNA synthetase, class II, conserved region (InterPro:IPR006195), Aspartyl-tRNA synthetase, class IIb (InterPro:IPR002312), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D, K and N) (InterPro:IPR004364), Aminoacyl-tRNA synthetase, class II (D, K and N)-like (InterPro:IPR018150); BEST Arabidopsis thaliana protein match is: aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative (TAIR:AT4G31180.2); Has 18508 Blast hits to 15212 proteins in 1719 species: Archae - 299; Bacteria - 10385; Metazoa - 672; Fungi - 662; Plants - 233; Viruses - 0; Other Eukaryotes - 6257 (source: NCBI BLink).  protein_id AT4G26870.1p  transcript_id AT4G26870.1  protein_id AT4G26870.1p  transcript_id AT4G26870.1  
At4g26880	chr4:013508265	0.0	C/13508265-13508723	AT4G26880.1  CDS  gene_syn F10M23.220, F10M23_220  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product stigma-specific Stig1 family protein  note stigma-specific Stig1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Stigma-specific protein Stig1 (InterPro:IPR006969); BEST Arabidopsis thaliana protein match is: stigma-specific Stig1 family protein (TAIR:AT5G55110.1); Has 167 Blast hits to 106 proteins in 25 species: Archae - 0; Bacteria - 82; Metazoa - 6; Fungi - 7; Plants - 64; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT4G26880.1p  transcript_id AT4G26880.1  protein_id AT4G26880.1p  transcript_id AT4G26880.1  
At4g26890	chr4:013512072	0.0	W/13512072-13513406	AT4G26890.1  CDS  gene_syn F10M23.230, F10M23_230, MAPKKK16  gene MAPKKK16  function member of MEKK subfamily  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product MAPKKK16; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note MAPKKK16; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: root, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: MAPKKK15; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G55090.1); Has 95106 Blast hits to 93730 proteins in 3606 species: Archae - 86; Bacteria - 8222; Metazoa - 42233; Fungi - 8520; Plants - 18149; Viruses - 616; Other Eukaryotes - 17280 (source: NCBI BLink).  protein_id AT4G26890.1p  transcript_id AT4G26890.1  protein_id AT4G26890.1p  transcript_id AT4G26890.1  
At4g26900	chr4:013515514	0.0	W/13515514-13515700,13515793-13515875,13515969-13516063,13516156-13516259,13516373-13516542,13516650-13516764,13516865-13516920,13517006-13517044,13517158-13517256,13517437-13517499,13517607-13517669,13517762-13517844,13517975-13518083,13518184-13518237,13518458-13518545,13518885-13518922,13518998-13519103,13519306-13519472,13519549-13519608	AT4G26900.1  CDS  gene_syn AT-HF, HIS HF, HISN4  gene AT-HF  function encodes a glutamine amidotransferase and cyclase, catalyzes the fifth and sixth steps of the histidine biosynthetic pathway  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|9654139|ISS  go_process histidine biosynthetic process|GO:0000105|17434988|IMP  go_process histidine biosynthetic process|GO:0000105|9654139|IGI  go_function imidazoleglycerol-phosphate synthase activity|GO:0000107|9654139|IGI  product AT-HF (HIS HF); imidazoleglycerol-phosphate synthase  note HIS HF (AT-HF); FUNCTIONS IN: imidazoleglycerol-phosphate synthase activity; INVOLVED IN: histidine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Imidazole glycerol phosphate synthase, subunit H (InterPro:IPR010139), Aldolase-type TIM barrel (InterPro:IPR013785), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Ribulose-phosphate binding barrel (InterPro:IPR011060), Histidine biosynthesis, HisF (InterPro:IPR004651), Glutamine amidotransferase type 1 (InterPro:IPR017926), Histidine biosynthesis (InterPro:IPR006062), Imidazole glycerol phosphate synthase HisHF (InterPro:IPR014640); Has 12470 Blast hits to 12457 proteins in 1273 species: Archae - 365; Bacteria - 5714; Metazoa - 2; Fungi - 98; Plants - 40; Viruses - 0; Other Eukaryotes - 6251 (source: NCBI BLink).  protein_id AT4G26900.1p  transcript_id AT4G26900.1  protein_id AT4G26900.1p  transcript_id AT4G26900.1  
At4g26910	chr4:013522010	0.0	C/13522010-13522055,13521871-13521926,13521736-13521780,13521352-13521618,13521115-13521209,13520897-13520987,13520694-13520804,13520396-13520590,13520127-13520318	AT4G26910.3  CDS  gene_syn F10M23.250, F10M23_250  go_component mitochondrion|GO:0005739|15276431|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process tricarboxylic acid cycle|GO:0006099||IEA  go_process metabolic process|GO:0008152||IEA  go_function dihydrolipoyllysine-residue succinyltransferase activity|GO:0004149||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process metabolic process|GO:0008152||ISS  go_function acyltransferase activity|GO:0008415||ISS  product 2-oxoacid dehydrogenase family protein  note 2-oxoacid dehydrogenase family protein; FUNCTIONS IN: dihydrolipoyllysine-residue succinyltransferase activity, acyltransferase activity; INVOLVED IN: tricarboxylic acid cycle, metabolic process; LOCATED IN: mitochondrion, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), Dihydrolipoamide succinyltransferase (InterPro:IPR006255), 2-oxoacid dehydrogenase acyltransferase, catalytic domain (InterPro:IPR001078), Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: 2-oxoacid dehydrogenase family protein (TAIR:AT5G55070.1); Has 17559 Blast hits to 15124 proteins in 1351 species: Archae - 61; Bacteria - 8051; Metazoa - 666; Fungi - 331; Plants - 231; Viruses - 3; Other Eukaryotes - 8216 (source: NCBI BLink).  protein_id AT4G26910.3p  transcript_id AT4G26910.3  protein_id AT4G26910.3p  transcript_id AT4G26910.3  
At4g26910	chr4:013522836	0.0	C/13522836-13522889,13522676-13522750,13522495-13522549,13522321-13522401,13522010-13522084,13521871-13521926,13521736-13521780,13521352-13521618,13521115-13521209,13520897-13520987,13520694-13520804,13520396-13520590,13520127-13520318	AT4G26910.2  CDS  gene_syn F10M23.250, F10M23_250  go_component mitochondrion|GO:0005739|15276431|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process tricarboxylic acid cycle|GO:0006099||IEA  go_process metabolic process|GO:0008152||IEA  go_function dihydrolipoyllysine-residue succinyltransferase activity|GO:0004149||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process metabolic process|GO:0008152||ISS  go_function acyltransferase activity|GO:0008415||ISS  product 2-oxoacid dehydrogenase family protein  note 2-oxoacid dehydrogenase family protein; FUNCTIONS IN: dihydrolipoyllysine-residue succinyltransferase activity, acyltransferase activity; INVOLVED IN: tricarboxylic acid cycle, metabolic process; LOCATED IN: mitochondrion, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), Dihydrolipoamide succinyltransferase (InterPro:IPR006255), 2-oxoacid dehydrogenase acyltransferase, catalytic domain (InterPro:IPR001078), Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: 2-oxoacid dehydrogenase family protein (TAIR:AT5G55070.1); Has 18233 Blast hits to 15633 proteins in 1361 species: Archae - 63; Bacteria - 8382; Metazoa - 686; Fungi - 351; Plants - 255; Viruses - 3; Other Eukaryotes - 8493 (source: NCBI BLink).  protein_id AT4G26910.2p  transcript_id AT4G26910.2  protein_id AT4G26910.2p  transcript_id AT4G26910.2  
At4g26910	chr4:013522836	0.0	C/13522836-13522889,13522676-13522750,13522495-13522549,13522321-13522404,13522010-13522084,13521871-13521926,13521736-13521780,13521352-13521618,13521115-13521209,13520897-13520987,13520694-13520804,13520396-13520590,13520127-13520318	AT4G26910.1  CDS  gene_syn F10M23.250, F10M23_250  go_component mitochondrion|GO:0005739|15276431|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process tricarboxylic acid cycle|GO:0006099||IEA  go_process metabolic process|GO:0008152||IEA  go_function dihydrolipoyllysine-residue succinyltransferase activity|GO:0004149||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process metabolic process|GO:0008152||ISS  go_function acyltransferase activity|GO:0008415||ISS  product 2-oxoacid dehydrogenase family protein  note 2-oxoacid dehydrogenase family protein; FUNCTIONS IN: dihydrolipoyllysine-residue succinyltransferase activity, acyltransferase activity; INVOLVED IN: tricarboxylic acid cycle, metabolic process; LOCATED IN: mitochondrion, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dihydrolipoamide succinyltransferase (InterPro:IPR006255), 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), 2-oxoacid dehydrogenase acyltransferase, catalytic domain (InterPro:IPR001078), Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: 2-oxoacid dehydrogenase family protein (TAIR:AT5G55070.1); Has 18235 Blast hits to 15642 proteins in 1359 species: Archae - 63; Bacteria - 8371; Metazoa - 692; Fungi - 350; Plants - 255; Viruses - 3; Other Eukaryotes - 8501 (source: NCBI BLink).  protein_id AT4G26910.1p  transcript_id AT4G26910.1  protein_id AT4G26910.1p  transcript_id AT4G26910.1  
At4g26920	chr4:013525031	0.0	W/13525031-13525450,13525570-13525644,13525745-13525955,13526394-13526761,13526861-13527172	AT4G26920.1  CDS  gene_syn F10M23.260, F10M23_260  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon, leaf; EXPRESSED DURING: LP.04 four leaves visible, 4 leaf senescence stage, LP.02 two leaves visible; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: homeobox protein-related (TAIR:AT5G07260.1); Has 294 Blast hits to 227 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 294; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G26920.1p  transcript_id AT4G26920.1  protein_id AT4G26920.1p  transcript_id AT4G26920.1  
At4g26930	chr4:013527770	0.0	W/13527770-13528075,13528229-13528877,13528958-13529172	AT4G26930.1  CDS  gene_syn AtMYB97, F10M23.270, F10M23_270, MYB97, myb domain protein 97  gene MYB97  function Encodes a putative transcription factor (MYB97).  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product MYB97 (myb domain protein 97); DNA binding / transcription factor  note myb domain protein 97 (MYB97); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB120 (MYB DOMAIN PROTEIN 120); DNA binding / transcription factor (TAIR:AT5G55020.1); Has 6397 Blast hits to 5892 proteins in 352 species: Archae - 0; Bacteria - 0; Metazoa - 660; Fungi - 312; Plants - 3818; Viruses - 3; Other Eukaryotes - 1604 (source: NCBI BLink).  protein_id AT4G26930.1p  transcript_id AT4G26930.1  protein_id AT4G26930.1p  transcript_id AT4G26930.1  
At4g26940	chr4:013532266	0.0	C/13532266-13532387,13531748-13531844,13531594-13531658,13531289-13531500,13531156-13531219,13530993-13531065,13530751-13530871,13530568-13530655,13530355-13530406,13530223-13530249	AT4G26940.2  CDS  gene_syn F10M23.280, F10M23_280  go_component membrane|GO:0016020||IEA  go_process protein amino acid glycosylation|GO:0006486||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product galactosyltransferase family protein  note galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: galactosyltransferase family protein (TAIR:AT1G05170.1); Has 505 Blast hits to 503 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 260; Fungi - 1; Plants - 232; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT4G26940.2p  transcript_id AT4G26940.2  protein_id AT4G26940.2p  transcript_id AT4G26940.2  
At4g26940	chr4:013532266	0.0	C/13532266-13532387,13531748-13531844,13531594-13531658,13531289-13531500,13531156-13531219,13530993-13531065,13530751-13530871,13530568-13530655,13530355-13530480,13530143-13530249,13529911-13530059	AT4G26940.1  CDS  gene_syn F10M23.280, F10M23_280  go_component membrane|GO:0016020||IEA  go_process protein amino acid glycosylation|GO:0006486||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product galactosyltransferase family protein  note galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: galactosyltransferase family protein (TAIR:AT1G05170.1); Has 879 Blast hits to 874 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 544; Fungi - 7; Plants - 299; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT4G26940.1p  transcript_id AT4G26940.1  protein_id AT4G26940.1p  transcript_id AT4G26940.1  
At4g26950	chr4:013533643	0.0	C/13533643-13534077	AT4G26950.1  CDS  gene_syn F10M23.290, F10M23_290  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF584 (InterPro:IPR007608); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G04630.1); Has 175 Blast hits to 175 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 175; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G26950.1p  transcript_id AT4G26950.1  protein_id AT4G26950.1p  transcript_id AT4G26950.1  
At4g26960	chr4:013539592	0.0	C/13539592-13539653,13538923-13539331	AT4G26960.1  CDS  gene_syn F10M23.300, F10M23_300  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54970.1); Has 12 Blast hits to 12 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G26960.1p  transcript_id AT4G26960.1  protein_id AT4G26960.1p  transcript_id AT4G26960.1  
At4g26965	chr4:013539717	0.0	W/13539717-13539828,13540218-13540274,13540425-13540477,13540604-13540655,13540937-13540999,13541076-13541135,13541550-13541592,13541732-13541782,13541978-13542041	AT4G26965.1  CDS  go_component membrane|GO:0016020||IEA  go_function NADH dehydrogenase (ubiquinone) activity|GO:0008137||IEA  go_function electron carrier activity|GO:0009055||IEA  go_process biological_process|GO:0008150||ND  go_function oxidoreductase activity|GO:0016491||ISS  product NADH:ubiquinone oxidoreductase family protein  note NADH:ubiquinone oxidoreductase family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, NADH dehydrogenase (ubiquinone) activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase 17.2 kD subunit (InterPro:IPR007763); Has 264 Blast hits to 264 proteins in 68 species: Archae - 0; Bacteria - 20; Metazoa - 74; Fungi - 41; Plants - 15; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).  protein_id AT4G26965.1p  transcript_id AT4G26965.1  protein_id AT4G26965.1p  transcript_id AT4G26965.1  
At4g26965	chr4:013539832	0.0	W/13539832-13539832,13540218-13540274,13540425-13540477,13540604-13540655,13540937-13540999,13541076-13541135,13541550-13541592,13541732-13541782,13541978-13542041	AT4G26965.2  CDS  go_process biological_process|GO:0008150||ND  go_function oxidoreductase activity|GO:0016491||ISS  product NADH:ubiquinone oxidoreductase family protein  note NADH:ubiquinone oxidoreductase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; Has 65 Blast hits to 65 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 45; Fungi - 4; Plants - 15; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G26965.2p  transcript_id AT4G26965.2  protein_id AT4G26965.2p  transcript_id AT4G26965.2  
At4g26970	chr4:013543077	0.0	W/13543077-13543371,13543680-13543784,13543863-13544023,13544129-13544221,13544300-13544485,13544685-13544846,13544946-13545090,13545180-13545322,13545621-13545677,13545760-13545839,13545932-13546007,13546113-13546298,13546380-13546447,13546531-13546649,13546860-13546981,13547118-13547216,13547296-13547775,13547858-13547956,13548033-13548275,13548359-13548427	AT4G26970.1  CDS  gene_syn F10M23.310, F10M23_310  go_component mitochondrion|GO:0005739|18385124|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function copper ion binding|GO:0005507|16526091|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function aconitate hydratase activity|GO:0003994||ISS  product aconitate hydratase/ copper ion binding  note aconitate hydratase/ copper ion binding; FUNCTIONS IN: aconitate hydratase activity, copper ion binding; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Aconitase family, 4Fe-4S cluster binding site (InterPro:IPR018136), Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha (InterPro:IPR001030), Aconitase A/isopropylmalate dehydratase small subunit, swivel (InterPro:IPR000573), Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 (InterPro:IPR015932), Aconitase/Iron regulatory protein 2/2-methylisocitrate dehydratase (InterPro:IPR015934), Aconitase-like core (InterPro:IPR015937), Aconitase/3-isopropylmalate dehydratase, swivel (InterPro:IPR015928), Aconitase/iron regulatory protein 2 (InterPro:IPR006249), Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomains 1 and 3 (InterPro:IPR015931); BEST Arabidopsis thaliana protein match is: aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative (TAIR:AT2G05710.1); Has 15496 Blast hits to 15351 proteins in 1535 species: Archae - 312; Bacteria - 6112; Metazoa - 484; Fungi - 449; Plants - 132; Viruses - 0; Other Eukaryotes - 8007 (source: NCBI BLink).  protein_id AT4G26970.1p  transcript_id AT4G26970.1  protein_id AT4G26970.1p  transcript_id AT4G26970.1  
At4g26980	chr4:013550539	0.0	C/13550539-13550644,13550271-13550398,13550015-13550184,13549675-13549752,13549335-13549479,13548813-13549217	AT4G26980.1  CDS  gene_syn F10M23.320, F10M23_320  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 515 Blast hits to 412 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 325; Fungi - 9; Plants - 133; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT4G26980.1p  transcript_id AT4G26980.1  protein_id AT4G26980.1p  transcript_id AT4G26980.1  
At4g26990	chr4:013554079	0.0	C/13554079-13554253,13553707-13553828,13553474-13553616,13553148-13553211,13553039-13553066,13552683-13552900,13552230-13552490,13551863-13551961,13551690-13551740,13551413-13551500,13551150-13551325	AT4G26990.1  CDS  gene_syn F10M23.330, F10M23_330  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54920.1); Has 176 Blast hits to 161 proteins in 44 species: Archae - 0; Bacteria - 4; Metazoa - 71; Fungi - 20; Plants - 57; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT4G26990.1p  transcript_id AT4G26990.1  protein_id AT4G26990.1p  transcript_id AT4G26990.1  
At4g27000	chr4:013557449	0.0	C/13557449-13557763,13556896-13557361,13555792-13555847,13555550-13555680,13555369-13555465,13555100-13555279,13554983-13554985	AT4G27000.1  CDS  gene_syn ATRBP45C, F10M23.340, F10M23_340  gene ATRBP45C  go_function RNA binding|GO:0003723|11105760|ISS  product ATRBP45C; RNA binding  note ATRBP45C; FUNCTIONS IN: RNA binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: ATRBP45A (RNA-binding protein 45A); RNA binding (TAIR:AT5G54900.1); Has 24066 Blast hits to 14859 proteins in 588 species: Archae - 10; Bacteria - 1237; Metazoa - 14401; Fungi - 2729; Plants - 3582; Viruses - 5; Other Eukaryotes - 2102 (source: NCBI BLink).  protein_id AT4G27000.1p  transcript_id AT4G27000.1  protein_id AT4G27000.1p  transcript_id AT4G27000.1  
At4g27010	chr4:013558466	0.0	W/13558466-13559648,13559745-13560400,13560825-13561314,13561499-13561647,13561766-13565121,13565251-13565395,13565484-13565542,13565628-13565652,13565744-13565947,13566039-13566242,13566414-13566560,13566778-13567128,13567218-13567650,13567924-13568005,13568089-13568296	AT4G27010.2  CDS  gene_syn F10M23.350, F10M23_350  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72270.1).  protein_id AT4G27010.2p  transcript_id AT4G27010.2  protein_id AT4G27010.2p  transcript_id AT4G27010.2  
At4g27010	chr4:013558466	0.0	W/13558466-13559648,13559745-13560400,13560825-13561314,13561499-13561647,13561766-13565121,13565251-13565395,13565744-13565947,13566039-13566242,13566414-13566560,13566778-13567128,13567218-13567650,13567924-13568005,13568089-13568296	AT4G27010.1  CDS  gene_syn F10M23.350, F10M23_350  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72270.1); Has 222 Blast hits to 150 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 67; Plants - 38; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G27010.1p  transcript_id AT4G27010.1  protein_id AT4G27010.1p  transcript_id AT4G27010.1  
At4g27020	chr4:013571073	0.0	C/13571073-13571381,13570600-13570740,13570127-13570492,13569567-13569812,13569314-13569406,13568897-13569097,13568604-13568819	AT4G27020.1  CDS  gene_syn F10M23.360, F10M23_360  go_component vacuole|GO:0005773|15539469|IDA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: vacuole; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54870.1); Has 70 Blast hits to 70 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT4G27020.1p  transcript_id AT4G27020.1  protein_id AT4G27020.1p  transcript_id AT4G27020.1  
At4g27030	chr4:013571951	0.0	W/13571951-13572922	AT4G27030.1  CDS  gene_syn F10M23.370, F10M23_370  go_component chloroplast|GO:0009507||IEA  go_process post-translational protein modification|GO:0043687||IEA  go_process regulation of protein metabolic process|GO:0051246||IEA  go_function small conjugating protein ligase activity|GO:0019787||IEA  product small conjugating protein ligase  note small conjugating protein ligase; FUNCTIONS IN: small conjugating protein ligase activity; INVOLVED IN: regulation of protein metabolic process, post-translational protein modification; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: small conjugating protein ligase (TAIR:AT1G62190.1); Has 180 Blast hits to 180 proteins in 75 species: Archae - 0; Bacteria - 19; Metazoa - 108; Fungi - 0; Plants - 24; Viruses - 3; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT4G27030.1p  transcript_id AT4G27030.1  protein_id AT4G27030.1p  transcript_id AT4G27030.1  
At4g27040	chr4:013574526	0.0	C/13574526-13574576,13574327-13574437,13574031-13574166,13573698-13573852,13573491-13573598,13573284-13573373,13573061-13573162	AT4G27040.1  CDS  gene_syn F10M23.380, F10M23_380, VPS22  gene VPS22  go_component ESCRT II complex|GO:0000814|17090720|ISS  go_process vesicle-mediated transport|GO:0016192|16488176|ISS  go_function molecular_function|GO:0003674||ND  product VPS22  note VPS22; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: ESCRT II complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ESCRT-2 complex, Snf8 (InterPro:IPR016689), EAP30 (InterPro:IPR007286); Has 265 Blast hits to 263 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 90; Plants - 29; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT4G27040.1p  transcript_id AT4G27040.1  protein_id AT4G27040.1p  transcript_id AT4G27040.1  
At4g27040	chr4:013574526	0.0	C/13574526-13574576,13574327-13574437,13574031-13574166,13573698-13573852,13573491-13573598,13573284-13573373,13573061-13573162	AT4G27040.2  CDS  gene_syn F10M23.380, F10M23_380, VPS22  gene VPS22  go_component ESCRT II complex|GO:0000814|17090720|ISS  go_process vesicle-mediated transport|GO:0016192|16488176|ISS  go_function molecular_function|GO:0003674||ND  product VPS22  note VPS22; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: ESCRT II complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ESCRT-2 complex, Snf8 (InterPro:IPR016689), EAP30 (InterPro:IPR007286); Has 265 Blast hits to 263 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 90; Plants - 29; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT4G27040.2p  transcript_id AT4G27040.2  protein_id AT4G27040.2p  transcript_id AT4G27040.2  
At4g27040	chr4:013574526	0.0	C/13574526-13574576,13574327-13574437,13574031-13574166,13573698-13573852,13573491-13573598,13573284-13573373,13573061-13573162	AT4G27040.3  CDS  gene_syn F10M23.380, F10M23_380, VPS22  gene VPS22  go_component ESCRT II complex|GO:0000814|17090720|ISS  go_process vesicle-mediated transport|GO:0016192|16488176|ISS  go_function molecular_function|GO:0003674||ND  product VPS22  note VPS22; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: ESCRT II complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ESCRT-2 complex, Snf8 (InterPro:IPR016689), EAP30 (InterPro:IPR007286); Has 265 Blast hits to 263 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 90; Plants - 29; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT4G27040.3p  transcript_id AT4G27040.3  protein_id AT4G27040.3p  transcript_id AT4G27040.3  
At4g27040	chr4:013574526	0.0	C/13574526-13574576,13574327-13574437,13574031-13574166,13573698-13573852,13573491-13573598,13573284-13573373,13573061-13573162	AT4G27040.4  CDS  gene_syn F10M23.380, F10M23_380, VPS22  gene VPS22  go_component ESCRT II complex|GO:0000814|17090720|ISS  go_process vesicle-mediated transport|GO:0016192|16488176|ISS  go_function molecular_function|GO:0003674||ND  product VPS22  note VPS22; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: ESCRT II complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ESCRT-2 complex, Snf8 (InterPro:IPR016689), EAP30 (InterPro:IPR007286); Has 265 Blast hits to 263 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 90; Plants - 29; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT4G27040.4p  transcript_id AT4G27040.4  protein_id AT4G27040.4p  transcript_id AT4G27040.4  
At4g27050	chr4:013576500	0.0	C/13576500-13577429,13576260-13576397,13575884-13576177	AT4G27050.1  CDS  gene_syn F10M23.390, F10M23_390  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G29930.3); Has 1221 Blast hits to 1187 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1221; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G27050.1p  transcript_id AT4G27050.1  protein_id AT4G27050.1p  transcript_id AT4G27050.1  
At4g27050	chr4:013576500	0.0	C/13576500-13577429,13576260-13576397,13575884-13576177	AT4G27050.2  CDS  gene_syn F10M23.390, F10M23_390  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G29930.3); Has 1221 Blast hits to 1187 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1221; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G27050.2p  transcript_id AT4G27050.2  protein_id AT4G27050.2p  transcript_id AT4G27050.2  
At4g27050	chr4:013576500	0.0	C/13576500-13577429,13576260-13576397,13575884-13576177	AT4G27050.3  CDS  gene_syn F10M23.390, F10M23_390  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G29930.3); Has 1221 Blast hits to 1187 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1221; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G27050.3p  transcript_id AT4G27050.3  protein_id AT4G27050.3p  transcript_id AT4G27050.3  
At4g27050	chr4:013576500	0.0	C/13576500-13577429,13576260-13576397,13575884-13576177	AT4G27050.4  CDS  gene_syn F10M23.390, F10M23_390  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G29930.3); Has 1221 Blast hits to 1187 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1221; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G27050.4p  transcript_id AT4G27050.4  protein_id AT4G27050.4p  transcript_id AT4G27050.4  
At4g27052	chr4:013579080	0.0	W/13579080-13579310	AT4G27052.1  pseudogenic_transcript  pseudo  function unknown pseudogene  
At4g27060	chr4:013584348	0.0	C/13584348-13585070,13583831-13584022,13581873-13583354,13581581-13581778	AT4G27060.1  CDS  gene_syn CN, CONVOLUTA, SPIRAL 2, SPR2, T24A18.10, T24A18_10, TOR1, TORTIFOLIA 1  gene TOR1  function Encodes a novel, plant-specific microtubule-associated protein that regulates the orientation of cortical microtubules and the direction of organ growth. The protein plays a role in control of microtubule dependent anisotropic cell elongation. spr2 mutant rosette leaves, cauline leaves, roots, petioles and petals curl in an anticlockwise direction.  go_component cortical microtubule, transverse to long axis|GO:0010005|15324671|IDA  go_process multicellular organismal development|GO:0007275|11003843|IMP  go_process unidimensional cell growth|GO:0009826|11003843|IMP  go_process circumnutation|GO:0010031|11003843|IMP  go_function microtubule binding|GO:0008017|15324671|IDA  product TOR1 (TORTIFOLIA 1); microtubule binding  note TORTIFOLIA 1 (TOR1); FUNCTIONS IN: microtubule binding; INVOLVED IN: multicellular organismal development, circumnutation, unidimensional cell growth; LOCATED IN: cortical microtubule, transverse to long axis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT1G50890.1); Has 130 Blast hits to 129 proteins in 24 species: Archae - 2; Bacteria - 6; Metazoa - 6; Fungi - 4; Plants - 93; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT4G27060.1p  transcript_id AT4G27060.1  protein_id AT4G27060.1p  transcript_id AT4G27060.1  
At4g27070	chr4:013586564	0.0	W/13586564-13586920,13587296-13587652,13587728-13588170,13588258-13588352,13588444-13588619	AT4G27070.1  CDS  gene_syn T24A18.20, T24A18_20, TRYPTOPHAN SYNTHASE BETA-SUBUNIT, TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2, TSB2  gene TSB2  function Tryptophan synthase beta. Expressed at low levels in all tissues.  go_component chloroplast|GO:0009507|1840915|IDA  go_process tryptophan biosynthetic process|GO:0000162|1840915|TAS  go_function tryptophan synthase activity|GO:0004834|1840915|IMP  go_function tryptophan synthase activity|GO:0004834|1840915|ISS  product TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2); tryptophan synthase  note TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2 (TSB2); FUNCTIONS IN: tryptophan synthase activity; INVOLVED IN: tryptophan biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, root tip, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, fruit development stages; CONTAINS InterPro DOMAIN/s: Tryptophan synthase, beta chain (InterPro:IPR006654), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Tryptophan synthase, beta chain, conserved site (InterPro:IPR006653); BEST Arabidopsis thaliana protein match is: TSB1 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 1); tryptophan synthase (TAIR:AT5G54810.1); Has 9083 Blast hits to 9083 proteins in 1492 species: Archae - 288; Bacteria - 4389; Metazoa - 9; Fungi - 152; Plants - 85; Viruses - 0; Other Eukaryotes - 4160 (source: NCBI BLink).  protein_id AT4G27070.1p  transcript_id AT4G27070.1  protein_id AT4G27070.1p  transcript_id AT4G27070.1  
At4g27080	chr4:013589156	0.0	W/13589156-13589196,13589394-13589549,13589638-13589728,13589892-13589986,13590136-13590193,13590501-13590685,13590804-13590861,13591228-13591268,13591342-13591416,13591938-13591994,13592102-13592168,13592290-13592433,13592522-13592743,13592829-13592981,13593095-13593172,13593258-13593335	AT4G27080.2  CDS  gene_syn ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, ATPDI7, ATPDIL5-4, PDI-LIKE 5-4, PDI7, PROTEIN DISULFIDE ISOMERASE 7  gene ATPDIL5-4  function putative protein  go_process cell redox homeostasis|GO:0045454||IEA  go_function protein disulfide isomerase activity|GO:0003756|18574595|ISS  product thioredoxin family protein  note PDI-LIKE 5-4 (ATPDIL5-4); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: cell redox homeostasis; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336), Thioredoxin domain (InterPro:IPR013766), Protein of unknown function DUF1692 (InterPro:IPR012936); BEST Arabidopsis thaliana protein match is: ATPDIL5-3 (PDI-LIKE 5-3); protein disulfide isomerase (TAIR:AT3G20560.1).  protein_id AT4G27080.2p  transcript_id AT4G27080.2  protein_id AT4G27080.2p  transcript_id AT4G27080.2  
At4g27080	chr4:013589156	0.0	W/13589156-13589196,13589638-13589728,13589892-13589986,13590136-13590193,13590501-13590685,13590804-13590861,13591228-13591268,13591342-13591416,13591938-13591994,13592102-13592168,13592290-13592433,13592522-13592743,13592829-13592981,13593095-13593172,13593258-13593335	AT4G27080.1  CDS  gene_syn ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, ATPDI7, ATPDIL5-4, PDI-LIKE 5-4, PDI7, PROTEIN DISULFIDE ISOMERASE 7  gene ATPDIL5-4  function putative protein  go_process cell redox homeostasis|GO:0045454||IEA  go_function protein disulfide isomerase activity|GO:0003756|18574595|ISS  product thioredoxin family protein  note PDI-LIKE 5-4 (ATPDIL5-4); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: cell redox homeostasis; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336), Protein of unknown function DUF1692 (InterPro:IPR012936); BEST Arabidopsis thaliana protein match is: ATPDIL5-3 (PDI-LIKE 5-3); protein disulfide isomerase (TAIR:AT3G20560.1); Has 6295 Blast hits to 4463 proteins in 692 species: Archae - 31; Bacteria - 895; Metazoa - 2878; Fungi - 782; Plants - 628; Viruses - 3; Other Eukaryotes - 1078 (source: NCBI BLink).  protein_id AT4G27080.1p  transcript_id AT4G27080.1  protein_id AT4G27080.1p  transcript_id AT4G27080.1  
At4g27090	chr4:013595185	0.0	C/13595185-13595187,13594858-13594959,13594436-13594565,13594255-13594367,13594104-13594160	AT4G27090.1  CDS  gene_syn T24A18.40, T24A18_40  go_component nucleolus|GO:0005730|15496452|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L14 (RPL14B)  note 60S ribosomal protein L14 (RPL14B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 8 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L14 (InterPro:IPR002784); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L14 (RPL14A) (TAIR:AT2G20450.1); Has 520 Blast hits to 520 proteins in 229 species: Archae - 47; Bacteria - 0; Metazoa - 210; Fungi - 93; Plants - 65; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT4G27090.1p  transcript_id AT4G27090.1  protein_id AT4G27090.1p  transcript_id AT4G27090.1  
At4g27100	chr4:013595845	0.0	W/13595845-13595934,13596543-13596638,13596746-13596849,13596975-13597114,13597207-13597305,13597393-13597515,13597606-13597694,13597809-13597914,13597999-13598096,13598169-13598513,13598609-13598620	AT4G27100.2  CDS  gene_syn T24A18.50, T24A18_50  go_component intracellular|GO:0005622||IEA  go_process regulation of Rab GTPase activity|GO:0032313||IEA  go_function RAB GTPase activator activity|GO:0005097||IEA  product RAB GTPase activator  note RAB GTPase activator; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: RAB GTPase activator (TAIR:AT5G54780.1); Has 3166 Blast hits to 3067 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 1980; Fungi - 484; Plants - 322; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink).  protein_id AT4G27100.2p  transcript_id AT4G27100.2  protein_id AT4G27100.2p  transcript_id AT4G27100.2  
At4g27100	chr4:013595845	0.0	W/13595845-13595934,13596543-13596638,13596746-13596849,13596975-13597114,13597207-13597305,13597393-13597515,13597606-13597694,13597809-13597914,13597999-13598096,13598169-13598534	AT4G27100.1  CDS  gene_syn T24A18.50, T24A18_50  go_component intracellular|GO:0005622||IEA  go_process regulation of Rab GTPase activity|GO:0032313||IEA  go_function RAB GTPase activator activity|GO:0005097||IEA  product RAB GTPase activator  note RAB GTPase activator; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: RAB GTPase activator (TAIR:AT5G54780.1); Has 3164 Blast hits to 3063 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 1976; Fungi - 484; Plants - 324; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink).  protein_id AT4G27100.1p  transcript_id AT4G27100.1  protein_id AT4G27100.1p  transcript_id AT4G27100.1  
At4g27110	chr4:013600954	0.0	C/13600954-13601521,13600706-13600851,13600283-13600615,13599236-13600195	AT4G27110.1  CDS  gene_syn COBL11, COBRA-LIKE PROTEIN 11 PRECURSOR, T24A18.60, T24A18_60  gene COBL11  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12376623|TAS  go_component anchored to membrane|GO:0031225|12805596|TAS  go_process biological_process|GO:0008150||ND  product COBL11 (COBRA-LIKE PROTEIN 11 PRECURSOR)  note COBRA-LIKE PROTEIN 11 PRECURSOR (COBL11); INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918); BEST Arabidopsis thaliana protein match is: COBL10 (COBRA-LIKE PROTEIN 10 PRECURSOR) (TAIR:AT3G20580.1); Has 243 Blast hits to 239 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 243; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G27110.1p  transcript_id AT4G27110.1  protein_id AT4G27110.1p  transcript_id AT4G27110.1  
At4g27120	chr4:013604108	0.0	C/13604108-13604227,13603908-13604007,13603520-13603629,13603229-13603330,13602983-13603141,13602712-13602768,13602587-13602623,13602210-13602421	AT4G27120.1  CDS  gene_syn T24A18.70, T24A18_70  product unknown protein  note unknown protein; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 15262 Blast hits to 8289 proteins in 585 species: Archae - 27; Bacteria - 1387; Metazoa - 6452; Fungi - 1437; Plants - 513; Viruses - 165; Other Eukaryotes - 5281 (source: NCBI BLink).  protein_id AT4G27120.1p  transcript_id AT4G27120.1  protein_id AT4G27120.1p  transcript_id AT4G27120.1  
At4g27120	chr4:013604108	0.0	C/13604108-13604227,13603908-13604007,13603520-13603629,13603229-13603330,13602983-13603141,13602712-13602768,13602587-13602623,13602210-13602421	AT4G27120.2  CDS  gene_syn T24A18.70, T24A18_70  product unknown protein  note unknown protein; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 15262 Blast hits to 8289 proteins in 585 species: Archae - 27; Bacteria - 1387; Metazoa - 6452; Fungi - 1437; Plants - 513; Viruses - 165; Other Eukaryotes - 5281 (source: NCBI BLink).  protein_id AT4G27120.2p  transcript_id AT4G27120.2  protein_id AT4G27120.2p  transcript_id AT4G27120.2  
At4g27130	chr4:013605489	0.0	C/13605489-13605525,13605117-13605322,13604939-13604992,13604814-13604858	AT4G27130.1  CDS  gene_syn T24A18.80, T24A18_80  go_process translation|GO:0006412||IEA  go_process translational initiation|GO:0006413||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_component cellular_component|GO:0005575||ND  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product eukaryotic translation initiation factor SUI1, putative  note eukaryotic translation initiation factor SUI1, putative; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation, translation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor SUI1 (InterPro:IPR001950), Eukaryotic translation initiation factor SUI1 (InterPro:IPR005874); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor SUI1, putative (TAIR:AT5G54760.2); Has 620 Blast hits to 617 proteins in 201 species: Archae - 6; Bacteria - 1; Metazoa - 295; Fungi - 109; Plants - 120; Viruses - 3; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT4G27130.1p  transcript_id AT4G27130.1  protein_id AT4G27130.1p  transcript_id AT4G27130.1  
At4g27140	chr4:013607363	0.0	W/13607363-13607857	AT4G27140.1  CDS  gene_syn T24A18.90, T24A18_90  go_component endomembrane system|GO:0012505||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  go_function nutrient reservoir activity|GO:0045735||ISS  product 2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1  note 2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1; FUNCTIONS IN: lipid binding, nutrient reservoir activity; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, leaf apex, leaf; EXPRESSED DURING: LP.06 six leaves visible; CONTAINS InterPro DOMAIN/s: Bifunctional trypsin/alpha-amylase inhibitor (InterPro:IPR013771), Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Napin/ Bra allergen (InterPro:IPR000617), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: 2S seed storage protein 4 / 2S albumin storage protein / NWMU2-2S albumin 4 (TAIR:AT4G27170.1); Has 196 Blast hits to 189 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 193; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G27140.1p  transcript_id AT4G27140.1  protein_id AT4G27140.1p  transcript_id AT4G27140.1  
At4g27150	chr4:013609396	0.0	W/13609396-13609908	AT4G27150.1  CDS  gene_syn T24A18.100, T24A18_100  go_component endomembrane system|GO:0012505||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  go_function nutrient reservoir activity|GO:0045735||ISS  product 2S seed storage protein 2 / 2S albumin storage protein / NWMU2-2S albumin 2  note 2S seed storage protein 2 / 2S albumin storage protein / NWMU2-2S albumin 2; FUNCTIONS IN: lipid binding, nutrient reservoir activity; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional trypsin/alpha-amylase inhibitor (InterPro:IPR013771), Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Napin/ Bra allergen (InterPro:IPR000617), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: AT2S3; lipid binding / nutrient reservoir (TAIR:AT4G27160.1); Has 152 Blast hits to 147 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G27150.1p  transcript_id AT4G27150.1  protein_id AT4G27150.1p  transcript_id AT4G27150.1  
At4g27160	chr4:013611836	0.0	W/13611836-13612330	AT4G27160.1  CDS  gene_syn AT2S3, T24A18.110, T24A18_110  gene AT2S3  go_component endomembrane system|GO:0012505||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  go_function nutrient reservoir activity|GO:0045735||ISS  product AT2S3; lipid binding / nutrient reservoir  note AT2S3; FUNCTIONS IN: lipid binding, nutrient reservoir activity; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional trypsin/alpha-amylase inhibitor (InterPro:IPR013771), Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Napin/ Bra allergen (InterPro:IPR000617), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: 2S seed storage protein 2 / 2S albumin storage protein / NWMU2-2S albumin 2 (TAIR:AT4G27150.1); Has 162 Blast hits to 155 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 161; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G27160.1p  transcript_id AT4G27160.1  protein_id AT4G27160.1p  transcript_id AT4G27160.1  
At4g27170	chr4:013613637	0.0	W/13613637-13614137	AT4G27170.1  CDS  gene_syn T24A18.120, T24A18_120  go_component endomembrane system|GO:0012505||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  go_function nutrient reservoir activity|GO:0045735||ISS  product 2S seed storage protein 4 / 2S albumin storage protein / NWMU2-2S albumin 4  note 2S seed storage protein 4 / 2S albumin storage protein / NWMU2-2S albumin 4; FUNCTIONS IN: lipid binding, nutrient reservoir activity; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional trypsin/alpha-amylase inhibitor (InterPro:IPR013771), Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Napin/ Bra allergen (InterPro:IPR000617), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: 2S seed storage protein 2 / 2S albumin storage protein / NWMU2-2S albumin 2 (TAIR:AT4G27150.1); Has 170 Blast hits to 164 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 169; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G27170.1p  transcript_id AT4G27170.1  protein_id AT4G27170.1p  transcript_id AT4G27170.1  
At4g27180	chr4:013618522	0.0	C/13618522-13618689,13618262-13618406,13618055-13618164,13617857-13617976,13617580-13617783,13617322-13617498,13617152-13617226,13616918-13617064,13616693-13616831,13616507-13616616,13616161-13616322,13615877-13616085,13615707-13615788,13615509-13615613,13615317-13615421,13615057-13615236	AT4G27180.1  CDS  gene_syn ARABIDOPSIS THALIANA KINESIN 2, ATK2, KATB, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA B, T24A18.130, T24A18_130  gene ATK2  function kinesin heavy chain subunit  go_process microtubule-based movement|GO:0007018||IEA  go_component kinesin complex|GO:0005871|8492804|ISS  go_function microtubule motor activity|GO:0003777||ISS  go_function microtubule binding|GO:0008017|8616235|IDA  product ATK2 (ARABIDOPSIS THALIANA KINESIN 2); microtubule binding / microtubule motor  note ARABIDOPSIS THALIANA KINESIN 2 (ATK2); FUNCTIONS IN: microtubule binding, microtubule motor activity; INVOLVED IN: microtubule-based movement; LOCATED IN: kinesin complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATK3 (ARABIDOPSIS THALIANA KINESIN 3); ATPase/ microtubule binding / microtubule motor (TAIR:AT5G54670.1); Has 63283 Blast hits to 36149 proteins in 1547 species: Archae - 679; Bacteria - 5287; Metazoa - 33057; Fungi - 4713; Plants - 2619; Viruses - 195; Other Eukaryotes - 16733 (source: NCBI BLink).  protein_id AT4G27180.1p  transcript_id AT4G27180.1  protein_id AT4G27180.1p  transcript_id AT4G27180.1  
At4g27190	chr4:013620977	0.0	C/13620977-13623934	AT4G27190.1  CDS  gene_syn T24A18.140, T24A18_140  go_process apoptosis|GO:0006915||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component cellular_component|GO:0005575||ND  go_process defense response|GO:0006952||ISS  product disease resistance protein (NBS-LRR class), putative  note disease resistance protein (NBS-LRR class), putative; FUNCTIONS IN: protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (NBS-LRR class), putative (TAIR:AT4G27220.1); Has 11019 Blast hits to 10334 proteins in 440 species: Archae - 2; Bacteria - 315; Metazoa - 1545; Fungi - 66; Plants - 8951; Viruses - 4; Other Eukaryotes - 136 (source: NCBI BLink).  protein_id AT4G27190.1p  transcript_id AT4G27190.1  protein_id AT4G27190.1p  transcript_id AT4G27190.1  
At4g27200	chr4:013624728	0.0	W/13624728-13627237	AT4G27200.1  mRNA_TE_gene  pseudo  gene_syn M4I22.10, M4I22_10  note Transposable element gene, copia-like retrotransposon family, has a 1.7e-36 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)  
At4g27210	chr4:013627417	0.0	W/13627417-13631922	AT4G27210.1  mRNA_TE_gene  pseudo  gene_syn M4I22.20, M4I22_20  note Transposable element gene, copia-like retrotransposon family, has a 1.6e-249 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)  
At4g27220	chr4:013633953	0.0	C/13633953-13636712	AT4G27220.1  CDS  gene_syn M4I22.30, M4I22_30  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (NBS-LRR class), putative  note disease resistance protein (NBS-LRR class), putative; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: defense response, apoptosis; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (NBS-LRR class), putative (TAIR:AT4G27190.1); Has 19825 Blast hits to 15591 proteins in 580 species: Archae - 12; Bacteria - 955; Metazoa - 6648; Fungi - 215; Plants - 11469; Viruses - 0; Other Eukaryotes - 526 (source: NCBI BLink).  protein_id AT4G27220.1p  transcript_id AT4G27220.1  protein_id AT4G27220.1p  transcript_id AT4G27220.1  
At4g27230	chr4:013638137	0.0	C/13638137-13638325,13637515-13637721	AT4G27230.1  CDS  gene_syn HTA2, M4I22.40, M4I22_40, histone H2A  gene HTA2  function Encodes HTA2, a histone H2A protein.  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_component nucleus|GO:0005634|17662028|IDA  go_function DNA binding|GO:0003677||ISS  product HTA2 (histone H2A); DNA binding  note histone H2A (HTA2); FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5); DNA binding (TAIR:AT5G54640.1); Has 3290 Blast hits to 3290 proteins in 309 species: Archae - 0; Bacteria - 0; Metazoa - 2206; Fungi - 254; Plants - 450; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink).  protein_id AT4G27230.1p  transcript_id AT4G27230.1  protein_id AT4G27230.1p  transcript_id AT4G27230.1  
At4g27240	chr4:013640160	0.0	W/13640160-13640820,13641006-13641640	AT4G27240.1  CDS  gene_syn M4I22.50, M4I22_50  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger protein-related (TAIR:AT5G54630.1); Has 126 Blast hits to 126 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 16; Plants - 109; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G27240.1p  transcript_id AT4G27240.1  protein_id AT4G27240.1p  transcript_id AT4G27240.1  
At4g27250	chr4:013644293	0.0	C/13644293-13644425,13643956-13644126,13643607-13643824,13643355-13643514,13643056-13643266,13642803-13642974	AT4G27250.1  CDS  gene_syn M4I22.60, M4I22_60  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_component cellular_component|GO:0005575||ND  go_function cinnamyl-alcohol dehydrogenase activity|GO:0045551||ISS  product dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family  note dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family; FUNCTIONS IN: cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: DFR (DIHYDROFLAVONOL 4-REDUCTASE); dihydrokaempferol 4-reductase (TAIR:AT5G42800.1); Has 7669 Blast hits to 7660 proteins in 1198 species: Archae - 128; Bacteria - 2755; Metazoa - 222; Fungi - 515; Plants - 1404; Viruses - 58; Other Eukaryotes - 2587 (source: NCBI BLink).  protein_id AT4G27250.1p  transcript_id AT4G27250.1  protein_id AT4G27250.1p  transcript_id AT4G27250.1  
At4g27260	chr4:013653704	0.0	W/13653704-13654029,13654290-13655218,13655309-13655892	AT4G27260.1  CDS  gene_syn GH3.5, M4I22.70, M4I22_70, WES1  gene WES1  function encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin.  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733|15659623|IMP  go_process response to auxin stimulus|GO:0009733||ISS  go_process auxin homeostasis|GO:0010252|15659623|TAS  go_function indole-3-acetic acid amido synthetase activity|GO:0010279|15659623|IDA  product WES1; indole-3-acetic acid amido synthetase  note WES1; FUNCTIONS IN: indole-3-acetic acid amido synthetase activity; INVOLVED IN: auxin homeostasis, response to auxin stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: DFL1 (DWARF IN LIGHT 1); indole-3-acetic acid amido synthetase (TAIR:AT5G54510.1); Has 804 Blast hits to 712 proteins in 111 species: Archae - 1; Bacteria - 238; Metazoa - 51; Fungi - 2; Plants - 220; Viruses - 0; Other Eukaryotes - 292 (source: NCBI BLink).  protein_id AT4G27260.1p  transcript_id AT4G27260.1  protein_id AT4G27260.1p  transcript_id AT4G27260.1  
At4g27270	chr4:013663221	0.0	C/13663221-13663243,13662802-13662895,13661777-13662039,13661458-13661695	AT4G27270.1  CDS  gene_syn M4I22.80, M4I22_80  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process negative regulation of transcription|GO:0016481||IEA  go_function FMN binding|GO:0010181||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product quinone reductase family protein  note quinone reductase family protein; FUNCTIONS IN: oxidoreductase activity, FMN binding; INVOLVED IN: negative regulation of transcription; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Flavoprotein WrbA (InterPro:IPR010089), Flavodoxin/nitric oxide synthase (InterPro:IPR008254); BEST Arabidopsis thaliana protein match is: FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1); FMN binding / oxidoreductase, acting on NADH or NADPH, quinone or similar compound as acceptor (TAIR:AT5G54500.1); Has 2198 Blast hits to 2196 proteins in 677 species: Archae - 49; Bacteria - 1577; Metazoa - 2; Fungi - 180; Plants - 120; Viruses - 1; Other Eukaryotes - 269 (source: NCBI BLink).  protein_id AT4G27270.1p  transcript_id AT4G27270.1  protein_id AT4G27270.1p  transcript_id AT4G27270.1  
At4g27280	chr4:013663770	0.0	C/13663770-13664162	AT4G27280.1  CDS  gene_syn M4I22.90, M4I22_90  go_function calcium ion binding|GO:0005509||IEA  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: PBP1 (PINOID-BINDING PROTEIN 1); calcium ion binding / protein binding (TAIR:AT5G54490.1); Has 486 Blast hits to 485 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 216; Fungi - 30; Plants - 142; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT4G27280.1p  transcript_id AT4G27280.1  protein_id AT4G27280.1p  transcript_id AT4G27280.1  
At4g27290	chr4:013666281	0.0	W/13666281-13667565,13667895-13668052,13668127-13668575,13668664-13668814,13668894-13669202	AT4G27290.1  CDS  gene_syn M4I22.100, M4I22_100  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function protein kinase activity|GO:0004672||ISS  product ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding  note ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding; FUNCTIONS IN: sugar binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-like, type 2 (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), EGF-like, type 3 (InterPro:IPR000742), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: S-locus protein kinase, putative (TAIR:AT4G27300.1); Has 89082 Blast hits to 87694 proteins in 3273 species: Archae - 50; Bacteria - 7811; Metazoa - 38518; Fungi - 6924; Plants - 20004; Viruses - 413; Other Eukaryotes - 15362 (source: NCBI BLink).  protein_id AT4G27290.1p  transcript_id AT4G27290.1  protein_id AT4G27290.1p  transcript_id AT4G27290.1  
At4g27300	chr4:013670938	0.0	C/13670938-13672348,13670702-13670838,13670402-13670612,13670059-13670296,13669827-13669977,13669308-13669607	AT4G27300.1  CDS  gene_syn M4I22.110, M4I22_110  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product S-locus protein kinase, putative  note S-locus protein kinase, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-like, type 2 (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding (TAIR:AT4G27290.1); Has 88253 Blast hits to 86828 proteins in 3228 species: Archae - 49; Bacteria - 7736; Metazoa - 38596; Fungi - 6866; Plants - 19489; Viruses - 390; Other Eukaryotes - 15127 (source: NCBI BLink).  protein_id AT4G27300.1p  transcript_id AT4G27300.1  protein_id AT4G27300.1p  transcript_id AT4G27300.1  
At4g27310	chr4:013675853	0.0	W/13675853-13676437,13676530-13676616	AT4G27310.1  CDS  gene_syn M4I22.120, M4I22_120  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (B-box type) family protein  note zinc finger (B-box type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: zinc finger (B-box type) family protein (TAIR:AT5G54470.1); Has 25431 Blast hits to 9915 proteins in 512 species: Archae - 19; Bacteria - 1691; Metazoa - 11248; Fungi - 2541; Plants - 1744; Viruses - 565; Other Eukaryotes - 7623 (source: NCBI BLink).  protein_id AT4G27310.1p  transcript_id AT4G27310.1  protein_id AT4G27310.1p  transcript_id AT4G27310.1  
At4g27320	chr4:013679943	0.0	C/13679943-13680717,13678860-13678867	AT4G27320.1  CDS  gene_syn M4I22.130, M4I22_130  function Contains a universal stress protein domain. Protein is phosphorylated in response to Phytophthora infestans zoospores and xylanase.  go_component chloroplast|GO:0009507||IEA  go_process response to molecule of fungal origin|GO:0002238|18785823|IDA  go_process response to stress|GO:0006950||ISS  go_function molecular_function|GO:0003674||ND  product universal stress protein (USP) family protein  note universal stress protein (USP) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to molecule of fungal origin, response to stress; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: universal stress protein (USP) family protein (TAIR:AT5G54430.1); Has 528 Blast hits to 528 proteins in 80 species: Archae - 6; Bacteria - 96; Metazoa - 28; Fungi - 11; Plants - 384; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G27320.1p  transcript_id AT4G27320.1  protein_id AT4G27320.1p  transcript_id AT4G27320.1  
At4g27330	chr4:013682929	0.0	C/13682929-13683459,13682596-13682829,13682327-13682506	AT4G27330.1  CDS  gene_syn F27G19.11, NOZZLE, NZZ, SPL, SPOROCYTELESS  gene SPL  function Encodes a putative transcription factor that is required for the initiation of both micro- and megagametogenesis and is expressed in the sporogenous tissue of the anther and the ovule. SPL is a chalaza identity gene that share overlapping functions in establishing the prospective chalaza of the ovule. It also plays a central role in patterning both the proximal-distal and the adaxial-abaxial axes in the ovule and generally interacts with YABBY proteins in vitro. Mutant is defective in the differentiation of primary sporogenous cells into microsporocytes, and does not properly form the anther wall. Regulator of anther cell differenctiation  go_component nucleus|GO:0005634|10465788|IDA  go_process megasporogenesis|GO:0009554|10465788|IDA  go_process microsporogenesis|GO:0009556|10465788|IDA  go_process sporocyte differentiation|GO:0048533|10465788|IMP  go_function transcription factor activity|GO:0003700|10465788|ISS  go_function protein binding|GO:0005515|10465788|IPI  go_function protein binding|GO:0005515|15299139|IPI  product SPL (SPOROCYTELESS); protein binding / transcription factor  note SPOROCYTELESS (SPL); FUNCTIONS IN: protein binding, transcription factor activity; INVOLVED IN: sporocyte differentiation, microsporogenesis, megasporogenesis; LOCATED IN: nucleus; EXPRESSED IN: leaf whorl, embryo, sepal, flower, seed; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Plant transcription factor NOZZLE (InterPro:IPR014855); Has 16 Blast hits to 16 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G27330.1p  transcript_id AT4G27330.1  protein_id AT4G27330.1p  transcript_id AT4G27330.1  
At4g27340	chr4:013689486	0.0	C/13689486-13690370,13689297-13689395,13689091-13689210,13688815-13688981,13688450-13688520,13688016-13688158,13687827-13687938,13687630-13687742,13687366-13687515	AT4G27340.1  CDS  gene_syn F27G19.9  go_process biological_process|GO:0008150||ND  product Met-10+ like family protein  note Met-10+ like family protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function Met10 (InterPro:IPR003402); BEST Arabidopsis thaliana protein match is: Met-10+ like family protein (TAIR:AT3G56120.1); Has 1006 Blast hits to 996 proteins in 336 species: Archae - 244; Bacteria - 250; Metazoa - 158; Fungi - 92; Plants - 67; Viruses - 0; Other Eukaryotes - 195 (source: NCBI BLink).  protein_id AT4G27340.1p  transcript_id AT4G27340.1  protein_id AT4G27340.1p  transcript_id AT4G27340.1  
At4g27350	chr4:013692145	0.0	C/13692145-13692621,13690979-13691338	AT4G27350.1  CDS  gene_syn F27G19.7  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1223 (InterPro:IPR010634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54240.1); Has 364 Blast hits to 364 proteins in 161 species: Archae - 0; Bacteria - 300; Metazoa - 0; Fungi - 2; Plants - 24; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT4G27350.1p  transcript_id AT4G27350.1  protein_id AT4G27350.1p  transcript_id AT4G27350.1  
At4g27360	chr4:013694032	0.0	W/13694032-13694169,13694344-13694517	AT4G27360.1  CDS  gene_syn F27G19.12  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based process|GO:0007017||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_component microtubule associated complex|GO:0005875||ISS  go_process microtubule-based process|GO:0007017||ISS  go_function microtubule motor activity|GO:0003777||ISS  product dynein light chain, putative  note dynein light chain, putative; FUNCTIONS IN: microtubule motor activity; INVOLVED IN: microtubule-based process; LOCATED IN: microtubule associated complex; CONTAINS InterPro DOMAIN/s: Dynein light chain, type 1 and 2 (InterPro:IPR001372); BEST Arabidopsis thaliana protein match is: dynein light chain, putative (TAIR:AT3G16120.1); Has 831 Blast hits to 831 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 450; Fungi - 70; Plants - 119; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).  protein_id AT4G27360.1p  transcript_id AT4G27360.1  protein_id AT4G27360.1p  transcript_id AT4G27360.1  
At4g27370	chr4:013700448	0.0	C/13700448-13700780,13700151-13700268,13699937-13700067,13699698-13699852,13699304-13699472,13699081-13699144,13698788-13698886,13698488-13698591,13698249-13698387,13698032-13698150,13697782-13697934,13697617-13697706,13697416-13697493,13697118-13697276,13696806-13696991,13696489-13696694,13696249-13696384,13696037-13696166,13695820-13695927,13695619-13695734,13695336-13695548,13694881-13695255	AT4G27370.1  CDS  gene_syn ATVIIIB, F27G19.14, MYOSIN VIII B, VIIIB  gene VIIIB  function member of Myosin-like proteins  go_component chloroplast|GO:0009507||IEA  go_component myosin complex|GO:0016459||IEA  go_component myosin complex|GO:0016459||ISS  go_process actin filament-based movement|GO:0030048|11516337|TAS  go_function motor activity|GO:0003774|11516337|ISS  go_function motor activity|GO:0003774||ISS  product VIIIB; motor  note VIIIB; FUNCTIONS IN: motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: chloroplast, myosin complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Myosin head, motor region (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: ATM2 (ARABIDOPSIS THALIANA MYOSIN 2); motor (TAIR:AT5G54280.2); Has 5368 Blast hits to 5029 proteins in 444 species: Archae - 0; Bacteria - 8; Metazoa - 3771; Fungi - 492; Plants - 245; Viruses - 0; Other Eukaryotes - 852 (source: NCBI BLink).  protein_id AT4G27370.1p  transcript_id AT4G27370.1  protein_id AT4G27370.1p  transcript_id AT4G27370.1  
At4g27380	chr4:013701340	0.0	W/13701340-13701430,13701511-13701565,13701999-13702069,13702185-13702293,13702809-13702953	AT4G27380.1  CDS  gene_syn F27G19.4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 24 proteins in 11 species: Archae - 0; Bacteria - 7; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G27380.1p  transcript_id AT4G27380.1  protein_id AT4G27380.1p  transcript_id AT4G27380.1  
At4g27390	chr4:013704275	0.0	C/13704275-13704655,13704104-13704181,13703906-13703940,13703763-13703818,13703570-13703668,13703417-13703475	AT4G27390.1  CDS  gene_syn F27G19.8  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 63 Blast hits to 63 proteins in 30 species: Archae - 0; Bacteria - 48; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G27390.1p  transcript_id AT4G27390.1  protein_id AT4G27390.1p  transcript_id AT4G27390.1  
At4g27395	chr4:013704782	0.0	W/13704782-13704854	AT4G27395.1  tRNA  gene_syn 67164.TRNA-PHE-1, 67165.TRNA-PHE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Phe (anticodon: GAA)  transcript_id AT4G27395.1  
At4g27400	chr4:013705341	0.0	W/13705341-13705572,13705714-13706050,13706181-13706637	AT4G27400.1  CDS  gene_syn F27G19.5  go_component endomembrane system|GO:0012505||IEA  go_process response to salt stress|GO:0009651|11351099|IEP  product late embryogenesis abundant protein-related / LEA protein-related  note late embryogenesis abundant protein-related / LEA protein-related; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: sepal, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Root cap (InterPro:IPR009646); BEST Arabidopsis thaliana protein match is: late embryogenesis abundant protein-related / LEA protein-related (TAIR:AT5G54370.1); Has 106 Blast hits to 106 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 106; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G27400.1p  transcript_id AT4G27400.1  protein_id AT4G27400.1p  transcript_id AT4G27400.1  
At4g27410	chr4:013708455	0.0	C/13708455-13708505,13707928-13708371	AT4G27410.1  CDS  gene_syn ANAC072, ARABIDOPSIS NAC 072, F27G19.10, F27G19_10, RD26, RESPONSIVE TO DESICCATION 26  gene RD26  function Encodes a NAC transcription factor induced in response to dessication. It is localized to the nucleus and acts as a transcriptional activator in ABA-mediated dehydration response.  go_component nucleus|GO:0005634|15341629|IDA  go_component nucleus|GO:0005634|16581911|IDA  go_process multicellular organismal development|GO:0007275||ISS  go_process response to water deprivation|GO:0009414|15319476|IEP  go_process response to water deprivation|GO:0009414|15319476|IMP  go_process response to water deprivation|GO:0009414|15341629|IMP  go_process response to abscisic acid stimulus|GO:0009737|15319476|IEP  go_process response to abscisic acid stimulus|GO:0009737|15341629|IMP  go_process hyperosmotic salinity response|GO:0042538|15319476|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|15319476|IDA  go_function transcription activator activity|GO:0016563|15341629|IDA  product RD26 (RESPONSIVE TO DESICCATION 26); transcription activator/ transcription factor  note RESPONSIVE TO DESICCATION 26 (RD26); FUNCTIONS IN: transcription factor activity, transcription activator activity; INVOLVED IN: multicellular organismal development, response to water deprivation, hyperosmotic salinity response, response to abscisic acid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC055 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 55); transcription factor (TAIR:AT3G15500.1); Has 177 Blast hits to 177 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G27410.1p  transcript_id AT4G27410.1  protein_id AT4G27410.1p  transcript_id AT4G27410.1  
At4g27410	chr4:013708805	0.0	C/13708805-13709013,13708455-13708746,13707928-13708371	AT4G27410.3  CDS  gene_syn ANAC072, ARABIDOPSIS NAC 072, F27G19.10, F27G19_10, RD26, RESPONSIVE TO DESICCATION 26  gene RD26  function Encodes a NAC transcription factor induced in response to dessication. It is localized to the nucleus and acts as a transcriptional activator in ABA-mediated dehydration response.  go_component nucleus|GO:0005634|15341629|IDA  go_component nucleus|GO:0005634|16581911|IDA  go_process multicellular organismal development|GO:0007275||ISS  go_process response to water deprivation|GO:0009414|15319476|IEP  go_process response to water deprivation|GO:0009414|15319476|IMP  go_process response to water deprivation|GO:0009414|15341629|IMP  go_process response to abscisic acid stimulus|GO:0009737|15319476|IEP  go_process response to abscisic acid stimulus|GO:0009737|15341629|IMP  go_process hyperosmotic salinity response|GO:0042538|15319476|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|15319476|IDA  go_function transcription activator activity|GO:0016563|15341629|IDA  product RD26 (RESPONSIVE TO DESICCATION 26); transcription activator/ transcription factor  note RESPONSIVE TO DESICCATION 26 (RD26); FUNCTIONS IN: transcription factor activity, transcription activator activity; INVOLVED IN: multicellular organismal development, response to water deprivation, hyperosmotic salinity response, response to abscisic acid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC055 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 55); transcription factor (TAIR:AT3G15500.1); Has 1614 Blast hits to 1611 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1614; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G27410.3p  transcript_id AT4G27410.3  protein_id AT4G27410.3p  transcript_id AT4G27410.3  
At4g27410	chr4:013708833	0.0	C/13708833-13709013,13708455-13708723,13707928-13708371	AT4G27410.2  CDS  gene_syn ANAC072, ARABIDOPSIS NAC 072, F27G19.10, F27G19_10, RD26, RESPONSIVE TO DESICCATION 26  gene RD26  function Encodes a NAC transcription factor induced in response to dessication. It is localized to the nucleus and acts as a transcriptional activator in ABA-mediated dehydration response.  go_component nucleus|GO:0005634|15341629|IDA  go_component nucleus|GO:0005634|16581911|IDA  go_process multicellular organismal development|GO:0007275||ISS  go_process response to water deprivation|GO:0009414|15319476|IEP  go_process response to water deprivation|GO:0009414|15319476|IMP  go_process response to water deprivation|GO:0009414|15341629|IMP  go_process response to abscisic acid stimulus|GO:0009737|15319476|IEP  go_process response to abscisic acid stimulus|GO:0009737|15341629|IMP  go_process hyperosmotic salinity response|GO:0042538|15319476|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|15319476|IDA  go_function transcription activator activity|GO:0016563|15341629|IDA  product RD26 (RESPONSIVE TO DESICCATION 26); transcription activator/ transcription factor  note RESPONSIVE TO DESICCATION 26 (RD26); FUNCTIONS IN: transcription factor activity, transcription activator activity; INVOLVED IN: multicellular organismal development, response to water deprivation, hyperosmotic salinity response, response to abscisic acid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC055 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 55); transcription factor (TAIR:AT3G15500.1); Has 1656 Blast hits to 1653 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1656; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G27410.2p  transcript_id AT4G27410.2  protein_id AT4G27410.2p  transcript_id AT4G27410.2  
At4g27415	chr4:013710552	0.0	W/13710552-13710686	AT4G27415.1  CDS  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G27415.1p  transcript_id AT4G27415.1  protein_id AT4G27415.1p  transcript_id AT4G27415.1  
At4g27415	chr4:013710552	0.0	W/13710552-13710686	AT4G27415.2  CDS  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G27415.2p  transcript_id AT4G27415.2  protein_id AT4G27415.2p  transcript_id AT4G27415.2  
At4g27420	chr4:013714684	0.0	C/13714684-13714797,13713618-13714425,13713183-13713514,13712434-13713099	AT4G27420.1  CDS  gene_syn F27G19.20, F27G19_20  go_component membrane|GO:0016020||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ABC transporter family protein  note ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: membrane; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT1G31770.1); Has 227631 Blast hits to 208604 proteins in 2633 species: Archae - 4204; Bacteria - 157548; Metazoa - 7143; Fungi - 4231; Plants - 2521; Viruses - 7; Other Eukaryotes - 51977 (source: NCBI BLink).  protein_id AT4G27420.1p  transcript_id AT4G27420.1  protein_id AT4G27420.1p  transcript_id AT4G27420.1  
At4g27430	chr4:013718817	0.0	W/13718817-13718875,13718977-13719153,13719243-13719364,13719473-13719525,13719614-13719657,13719757-13719909,13719998-13720224,13720323-13721770,13721843-13722736	AT4G27430.1  CDS  gene_syn CIP7, COP1-INTERACTING PROTEIN 7, F27G19.30, F27G19_30  gene CIP7  function Positive regulator of light-regulated genes. Novel nuclear protein which requires light for its high level expression.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component nucleus|GO:0005634|9668129|IDA  go_process response to light stimulus|GO:0009416|9668129|IEP  go_process anthocyanin biosynthetic process|GO:0009718|9668129|IDA  go_process chlorophyll biosynthetic process|GO:0015995|9668129|IDA  go_function transcription activator activity|GO:0016563|9668129|IGI  product CIP7 (COP1-INTERACTING PROTEIN 7); transcription activator  note COP1-INTERACTING PROTEIN 7 (CIP7); FUNCTIONS IN: transcription activator activity; INVOLVED IN: chlorophyll biosynthetic process, response to light stimulus, anthocyanin biosynthetic process; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR class), putative (TAIR:AT1G61100.1); Has 12309 Blast hits to 8159 proteins in 513 species: Archae - 6; Bacteria - 568; Metazoa - 5172; Fungi - 1177; Plants - 580; Viruses - 71; Other Eukaryotes - 4735 (source: NCBI BLink).  protein_id AT4G27430.1p  transcript_id AT4G27430.1  protein_id AT4G27430.1p  transcript_id AT4G27430.1  
At4g27430	chr4:013718817	0.0	W/13718817-13718875,13718977-13719153,13719243-13719364,13719473-13719525,13719614-13719657,13719757-13719909,13719998-13720224,13720323-13721770,13721843-13722736	AT4G27430.2  CDS  gene_syn CIP7, COP1-INTERACTING PROTEIN 7, F27G19.30, F27G19_30  gene CIP7  function Positive regulator of light-regulated genes. Novel nuclear protein which requires light for its high level expression.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component nucleus|GO:0005634|9668129|IDA  go_process response to light stimulus|GO:0009416|9668129|IEP  go_process anthocyanin biosynthetic process|GO:0009718|9668129|IDA  go_process chlorophyll biosynthetic process|GO:0015995|9668129|IDA  go_function transcription activator activity|GO:0016563|9668129|IGI  product CIP7 (COP1-INTERACTING PROTEIN 7); transcription activator  note COP1-INTERACTING PROTEIN 7 (CIP7); FUNCTIONS IN: transcription activator activity; INVOLVED IN: chlorophyll biosynthetic process, response to light stimulus, anthocyanin biosynthetic process; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR class), putative (TAIR:AT1G61100.1); Has 12309 Blast hits to 8159 proteins in 513 species: Archae - 6; Bacteria - 568; Metazoa - 5172; Fungi - 1177; Plants - 580; Viruses - 71; Other Eukaryotes - 4735 (source: NCBI BLink).  protein_id AT4G27430.2p  transcript_id AT4G27430.2  protein_id AT4G27430.2p  transcript_id AT4G27430.2  
At4g27435	chr4:013723903	0.0	W/13723903-13723992,13724090-13724295,13724647-13724872	AT4G27435.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15480.1); Has 159 Blast hits to 159 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 159; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G27435.1p  transcript_id AT4G27435.1  protein_id AT4G27435.1p  transcript_id AT4G27435.1  
At4g27440	chr4:013725648	0.0	W/13725648-13725809,13725893-13726421,13726500-13726858,13726952-13727107	AT4G27440.1  CDS  gene_syn F27G19.40, F27G19_40, PORB, PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B  gene PORB  function light-dependent NADPH:protochlorophyllide oxidoreductase B  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component chloroplast|GO:0009507|8624514|NAS  go_process chlorophyll biosynthetic process|GO:0015995|7659751|TAS  go_function oxidoreductase activity|GO:0016491||ISS  go_function protochlorophyllide reductase activity|GO:0016630|1714319|TAS  go_function protochlorophyllide reductase activity|GO:0016630|7659751|TAS  product PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B); oxidoreductase/ protochlorophyllide reductase  note PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B (PORB); FUNCTIONS IN: oxidoreductase activity, protochlorophyllide reductase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Light-dependent protochlorophyllide reductase (InterPro:IPR005979), NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: PORA; oxidoreductase/ protochlorophyllide reductase (TAIR:AT5G54190.1); Has 13246 Blast hits to 13231 proteins in 1250 species: Archae - 102; Bacteria - 6055; Metazoa - 1551; Fungi - 1131; Plants - 539; Viruses - 0; Other Eukaryotes - 3868 (source: NCBI BLink).  protein_id AT4G27440.1p  transcript_id AT4G27440.1  protein_id AT4G27440.1p  transcript_id AT4G27440.1  
At4g27440	chr4:013725648	0.0	W/13725648-13725809,13725893-13726421,13726500-13726858,13726952-13727107	AT4G27440.2  CDS  gene_syn F27G19.40, F27G19_40, PORB, PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B  gene PORB  function light-dependent NADPH:protochlorophyllide oxidoreductase B  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component chloroplast|GO:0009507|8624514|NAS  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process chlorophyll biosynthetic process|GO:0015995|7659751|TAS  go_function oxidoreductase activity|GO:0016491||ISS  go_function protochlorophyllide reductase activity|GO:0016630|1714319|TAS  go_function protochlorophyllide reductase activity|GO:0016630|7659751|TAS  product PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B); oxidoreductase/ protochlorophyllide reductase  note PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B (PORB); FUNCTIONS IN: oxidoreductase activity, protochlorophyllide reductase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Light-dependent protochlorophyllide reductase (InterPro:IPR005979), NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: PORA; oxidoreductase/ protochlorophyllide reductase (TAIR:AT5G54190.1); Has 13246 Blast hits to 13231 proteins in 1250 species: Archae - 102; Bacteria - 6055; Metazoa - 1551; Fungi - 1131; Plants - 539; Viruses - 0; Other Eukaryotes - 3868 (source: NCBI BLink).  protein_id AT4G27440.2p  transcript_id AT4G27440.2  protein_id AT4G27440.2p  transcript_id AT4G27440.2  
At4g27450	chr4:013728472	0.0	C/13728472-13728683,13728154-13728394,13727943-13728063,13727665-13727843	AT4G27450.1  CDS  gene_syn F27G19.50, F27G19_50  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15450.1); Has 327 Blast hits to 327 proteins in 81 species: Archae - 0; Bacteria - 46; Metazoa - 7; Fungi - 2; Plants - 248; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT4G27450.1p  transcript_id AT4G27450.1  protein_id AT4G27450.1p  transcript_id AT4G27450.1  
At4g27460	chr4:013732939	0.0	W/13732939-13733264,13733414-13734263	AT4G27460.1  CDS  gene_syn F27G19.60, F27G19_60  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product CBS domain-containing protein  note CBS domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G53750.1); Has 74 Blast hits to 73 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G27460.1p  transcript_id AT4G27460.1  protein_id AT4G27460.1p  transcript_id AT4G27460.1  
At4g27470	chr4:013735576	0.0	W/13735576-13736307	AT4G27470.1  CDS  gene_syn F27G19.70, F27G19_70  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: RMA1; protein binding / ubiquitin-protein ligase/ zinc ion binding (TAIR:AT4G03510.2); Has 2153 Blast hits to 2151 proteins in 200 species: Archae - 0; Bacteria - 0; Metazoa - 1218; Fungi - 305; Plants - 369; Viruses - 17; Other Eukaryotes - 244 (source: NCBI BLink).  protein_id AT4G27470.1p  transcript_id AT4G27470.1  protein_id AT4G27470.1p  transcript_id AT4G27470.1  
At4g27480	chr4:013737744	0.0	C/13737744-13738317,13737588-13737663,13737396-13737511,13736835-13737334	AT4G27480.1  CDS  gene_syn F27G19.80, F27G19_80  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component membrane|GO:0016020||ISS  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function acetylglucosaminyltransferase activity|GO:0008375||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein  note glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: carbohydrate biosynthetic process, N-terminal protein myristoylation; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 14 (InterPro:IPR003406); BEST Arabidopsis thaliana protein match is: glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein (TAIR:AT3G15350.2); Has 694 Blast hits to 691 proteins in 89 species: Archae - 0; Bacteria - 20; Metazoa - 457; Fungi - 0; Plants - 190; Viruses - 14; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT4G27480.1p  transcript_id AT4G27480.1  protein_id AT4G27480.1p  transcript_id AT4G27480.1  
At4g27480	chr4:013737744	0.0	C/13737744-13738317,13737588-13737663,13737396-13737511,13736835-13737334	AT4G27480.2  CDS  gene_syn F27G19.80, F27G19_80  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function acetylglucosaminyltransferase activity|GO:0008375||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein  note glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 14 (InterPro:IPR003406); BEST Arabidopsis thaliana protein match is: glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein (TAIR:AT3G15350.2); Has 694 Blast hits to 691 proteins in 89 species: Archae - 0; Bacteria - 20; Metazoa - 457; Fungi - 0; Plants - 190; Viruses - 14; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT4G27480.2p  transcript_id AT4G27480.2  protein_id AT4G27480.2p  transcript_id AT4G27480.2  
At4g27490	chr4:013739961	0.0	W/13739961-13740099,13740244-13740322,13740416-13740518,13740592-13740712,13740870-13740958,13741150-13741299,13741558-13741647	AT4G27490.1  CDS  gene_syn F27G19.90, F27G19_90  go_process RNA processing|GO:0006396||IEA  go_function 3 -5 -exoribonuclease activity|GO:0000175||IEA  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process RNA processing|GO:0006396||ISS  go_function 3 -5 -exoribonuclease activity|GO:0000175||ISS  go_function RNA binding|GO:0003723||ISS  product 3  exoribonuclease family domain 1-containing protein  note 3  exoribonuclease family domain 1-containing protein; FUNCTIONS IN: 3 -5 -exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 2 (InterPro:IPR015847), Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247); BEST Arabidopsis thaliana protein match is: RRP41; 3 -5 -exoribonuclease/ RNA binding (TAIR:AT3G61620.2); Has 3951 Blast hits to 3951 proteins in 1074 species: Archae - 228; Bacteria - 1948; Metazoa - 370; Fungi - 182; Plants - 97; Viruses - 0; Other Eukaryotes - 1126 (source: NCBI BLink).  protein_id AT4G27490.1p  transcript_id AT4G27490.1  protein_id AT4G27490.1p  transcript_id AT4G27490.1  
At4g27500	chr4:013743614	0.0	W/13743614-13743976,13744070-13744261,13744351-13744530,13744606-13744800,13744897-13745511,13745607-13745900	AT4G27500.1  CDS  gene_syn F27G19.100, F27G19_100, PPI1, PROTON PUMP INTERACTOR 1  gene PPI1  function interacts with H+-ATPase, and regulates its activity  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process regulation of proton transport|GO:0010155|12182706|TAS  go_function protein binding|GO:0005515|12182706|IPI  product PPI1 (PROTON PUMP INTERACTOR 1); protein binding  note PROTON PUMP INTERACTOR 1 (PPI1); FUNCTIONS IN: protein binding; INVOLVED IN: regulation of proton transport; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: PPI2 (proton pump interactor 2); protein binding (TAIR:AT3G15340.1); Has 48259 Blast hits to 28430 proteins in 1580 species: Archae - 370; Bacteria - 7184; Metazoa - 20111; Fungi - 5082; Plants - 1738; Viruses - 234; Other Eukaryotes - 13540 (source: NCBI BLink).  protein_id AT4G27500.1p  transcript_id AT4G27500.1  protein_id AT4G27500.1p  transcript_id AT4G27500.1  
At4g27510	chr4:013748898	0.0	C/13748898-13748996,13748211-13748690,13746841-13748073,13746682-13746762	AT4G27510.2  CDS  gene_syn F27G19.110, F27G19_110  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G27510.2p  transcript_id AT4G27510.2  protein_id AT4G27510.2p  transcript_id AT4G27510.2  
At4g27510	chr4:013748898	0.0	C/13748898-13748996,13748211-13748690,13746841-13748073,13746692-13746762,13746284-13746587	AT4G27510.1  CDS  gene_syn F27G19.110, F27G19_110  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; Has 14 Blast hits to 12 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G27510.1p  transcript_id AT4G27510.1  protein_id AT4G27510.1p  transcript_id AT4G27510.1  
At4g27520	chr4:013751633	0.0	C/13751633-13751819,13750668-13751530	AT4G27520.1  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component anchored to plasma membrane|GO:0046658|12805588|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function copper ion binding|GO:0005507||ISS  product plastocyanin-like domain-containing protein  note plastocyanin-like domain-containing protein; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: plastocyanin-like domain-containing protein (TAIR:AT5G53870.1); Has 143503 Blast hits to 63556 proteins in 1855 species: Archae - 183; Bacteria - 22350; Metazoa - 60212; Fungi - 22770; Plants - 10839; Viruses - 3626; Other Eukaryotes - 23523 (source: NCBI BLink).  protein_id AT4G27520.1p  transcript_id AT4G27520.1  protein_id AT4G27520.1p  transcript_id AT4G27520.1  
At4g27530	chr4:013752640	0.0	W/13752640-13752780,13752871-13753122	AT4G27530.1  CDS  gene_syn T29A15.20, T29A15_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G53895.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G27530.1p  transcript_id AT4G27530.1  protein_id AT4G27530.1p  transcript_id AT4G27530.1  
At4g27540	chr4:013754209	0.0	C/13754209-13754660,13753967-13754103,13753597-13753668,13753449-13753513	AT4G27540.1  CDS  gene_syn PRA1.H, PRENYLATED RAB ACCEPTOR 1.H, T29A15.30, T29A15_30  gene PRA1.H  go_component endoplasmic reticulum|GO:0005783|18583532|IDA  go_process vesicle-mediated transport|GO:0016192|18583532|IDA  go_function molecular_function|GO:0003674||ND  product PRA1.H (PRENYLATED RAB ACCEPTOR 1.H)  note PRENYLATED RAB ACCEPTOR 1.H (PRA1.H); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); Has 102 Blast hits to 102 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G27540.1p  transcript_id AT4G27540.1  protein_id AT4G27540.1p  transcript_id AT4G27540.1  
At4g27550	chr4:013755689	0.0	W/13755689-13755806,13755907-13756004,13756312-13756697,13756799-13756913,13757003-13757104,13757180-13757330,13757415-13757503,13757602-13757650,13757789-13757889,13757978-13758165,13758226-13758373,13758458-13758625,13758708-13758830,13758913-13759000,13759102-13759232,13759316-13759414,13759507-13759740	AT4G27550.1  CDS  gene_syn ATTPS4, T29A15.40, T29A15_40, TPS4, TREHALOSE -6-PHOSPHATASE SYNTHASE S4  gene ATTPS4  function Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active but no trehalose phosphatase (TPP)-like domain.  go_process trehalose biosynthetic process|GO:0005992|11701378|ISS  go_function alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity|GO:0003825|11701378|ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product ATTPS4; alpha,alpha-trehalose-phosphate synthase (UDP-forming)/ transferase, transferring glycosyl groups  note ATTPS4; FUNCTIONS IN: transferase activity, transferring glycosyl groups, alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity; INVOLVED IN: trehalose biosynthetic process; EXPRESSED IN: shoot apex; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 20 (InterPro:IPR001830), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: ATTPS2; alpha,alpha-trehalose-phosphate synthase (UDP-forming)/ transferase, transferring glycosyl groups (TAIR:AT1G16980.1); Has 2178 Blast hits to 2133 proteins in 596 species: Archae - 33; Bacteria - 1014; Metazoa - 97; Fungi - 474; Plants - 199; Viruses - 0; Other Eukaryotes - 361 (source: NCBI BLink).  protein_id AT4G27550.1p  transcript_id AT4G27550.1  protein_id AT4G27550.1p  transcript_id AT4G27550.1  
At4g27560	chr4:013760114	0.0	C/13760114-13761481	AT4G27560.1  CDS  gene_syn T29A15.50, T29A15_50  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_process response to salt stress|GO:0009651|11351099|IEP  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyltransferase family protein  note glycosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: response to salt stress, N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: glycosyltransferase family protein (TAIR:AT4G27570.1); Has 2957 Blast hits to 2932 proteins in 188 species: Archae - 0; Bacteria - 29; Metazoa - 348; Fungi - 9; Plants - 2562; Viruses - 3; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G27560.1p  transcript_id AT4G27560.1  protein_id AT4G27560.1p  transcript_id AT4G27560.1  
At4g27570	chr4:013763657	0.0	C/13763657-13765018	AT4G27570.1  CDS  gene_syn T29A15.60, T29A15_60  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyltransferase family protein  note glycosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: N-terminal protein myristoylation, metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: glycosyltransferase family protein (TAIR:AT4G27560.1); Has 2822 Blast hits to 2801 proteins in 194 species: Archae - 0; Bacteria - 20; Metazoa - 193; Fungi - 9; Plants - 2596; Viruses - 3; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G27570.1p  transcript_id AT4G27570.1  protein_id AT4G27570.1p  transcript_id AT4G27570.1  
At4g27580	chr4:013766187	0.0	C/13766187-13766306,13765832-13766026	AT4G27580.1  CDS  gene_syn T29A15.70, T29A15_70  go_component cell wall|GO:0005618|16287169|IDA  go_component mitochondrion|GO:0005739|11743114|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, cell wall; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 646 Blast hits to 429 proteins in 104 species: Archae - 6; Bacteria - 83; Metazoa - 79; Fungi - 64; Plants - 46; Viruses - 10; Other Eukaryotes - 358 (source: NCBI BLink).  protein_id AT4G27580.1p  transcript_id AT4G27580.1  protein_id AT4G27580.1p  transcript_id AT4G27580.1  
At4g27585	chr4:013769678	0.0	C/13769678-13769832,13769184-13769427,13768914-13769063,13768452-13768509,13768281-13768373,13768000-13768098,13767686-13767777,13767364-13767423,13766984-13767268	AT4G27585.1  CDS  go_component mitochondrion|GO:0005739|18385124|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process biological_process|GO:0008150||ND  product band 7 family protein  note band 7 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid, membrane; EXPRESSED IN: callus, leaf; CONTAINS InterPro DOMAIN/s: Stomatin (InterPro:IPR001972), Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: band 7 family protein (TAIR:AT5G54100.1); Has 7621 Blast hits to 7607 proteins in 1311 species: Archae - 148; Bacteria - 4066; Metazoa - 810; Fungi - 128; Plants - 171; Viruses - 3; Other Eukaryotes - 2295 (source: NCBI BLink).  protein_id AT4G27585.1p  transcript_id AT4G27585.1  protein_id AT4G27585.1p  transcript_id AT4G27585.1  
At4g27590	chr4:013771224	0.0	W/13771224-13771347,13771444-13771763,13771943-13771989,13772087-13772594	AT4G27590.2  CDS  gene_syn T29A15.80, T29A15_80  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_process copper ion transport|GO:0006825||ISS  go_function copper ion binding|GO:0005507||ISS  product copper-binding protein-related  note copper-binding protein-related; FUNCTIONS IN: copper ion binding, metal ion binding; INVOLVED IN: copper ion transport, metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: metal ion binding (TAIR:AT3G56891.1).  protein_id AT4G27590.2p  transcript_id AT4G27590.2  protein_id AT4G27590.2p  transcript_id AT4G27590.2  
At4g27590	chr4:013771224	0.0	W/13771224-13771347,13771444-13771790	AT4G27590.1  CDS  gene_syn T29A15.80, T29A15_80  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_process copper ion transport|GO:0006825||ISS  go_function copper ion binding|GO:0005507||ISS  product copper-binding protein-related  note copper-binding protein-related; FUNCTIONS IN: copper ion binding, metal ion binding; INVOLVED IN: copper ion transport, metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: metal ion binding (TAIR:AT3G56891.1); Has 394 Blast hits to 394 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 394; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G27590.1p  transcript_id AT4G27590.1  protein_id AT4G27590.1p  transcript_id AT4G27590.1  
At4g27595	chr4:013777112	0.0	C/13777112-13777128,13776326-13776528,13772819-13776264	AT4G27595.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65010.1); Has 261585 Blast hits to 107736 proteins in 2583 species: Archae - 3194; Bacteria - 44984; Metazoa - 110582; Fungi - 17120; Plants - 9384; Viruses - 1399; Other Eukaryotes - 74922 (source: NCBI BLink).  protein_id AT4G27595.1p  transcript_id AT4G27595.1  protein_id AT4G27595.1p  transcript_id AT4G27595.1  
At4g27597	chr4:013778759	0.0	W/13778759-13780954	AT4G27597.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 7.3e-86 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays)  
At4g27600	chr4:013784616	0.0	C/13784616-13785005,13784208-13784470,13783872-13783989,13783404-13783612,13782753-13783188	AT4G27600.1  CDS  gene_syn T29A15.90, T29A15_90  go_component chloroplast|GO:0009507||IEA  go_function kinase activity|GO:0016301||ISS  product pfkB-type carbohydrate kinase family protein  note pfkB-type carbohydrate kinase family protein; FUNCTIONS IN: kinase activity; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-type carbohydrate kinase family protein (TAIR:AT1G19600.1); Has 6743 Blast hits to 6743 proteins in 1016 species: Archae - 117; Bacteria - 3328; Metazoa - 235; Fungi - 72; Plants - 185; Viruses - 0; Other Eukaryotes - 2806 (source: NCBI BLink).  protein_id AT4G27600.1p  transcript_id AT4G27600.1  protein_id AT4G27600.1p  transcript_id AT4G27600.1  
At4g27610	chr4:013787149	0.0	C/13787149-13787332,13786957-13787061,13785648-13786363	AT4G27610.1  CDS  gene_syn T29A15.100, T29A15_100  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27620.2); Has 1130 Blast hits to 1011 proteins in 147 species: Archae - 9; Bacteria - 76; Metazoa - 577; Fungi - 79; Plants - 62; Viruses - 9; Other Eukaryotes - 318 (source: NCBI BLink).  protein_id AT4G27610.1p  transcript_id AT4G27610.1  protein_id AT4G27610.1p  transcript_id AT4G27610.1  
At4g27610	chr4:013787149	0.0	C/13787149-13787332,13786957-13787061,13785648-13786363	AT4G27610.2  CDS  gene_syn T29A15.100, T29A15_100  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27620.2); Has 1130 Blast hits to 1011 proteins in 147 species: Archae - 9; Bacteria - 76; Metazoa - 577; Fungi - 79; Plants - 62; Viruses - 9; Other Eukaryotes - 318 (source: NCBI BLink).  protein_id AT4G27610.2p  transcript_id AT4G27610.2  protein_id AT4G27610.2p  transcript_id AT4G27610.2  
At4g27610	chr4:013787149	0.0	C/13787149-13787332,13786957-13787061,13785648-13786363	AT4G27610.3  CDS  gene_syn T29A15.100, T29A15_100  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27620.2); Has 1130 Blast hits to 1011 proteins in 147 species: Archae - 9; Bacteria - 76; Metazoa - 577; Fungi - 79; Plants - 62; Viruses - 9; Other Eukaryotes - 318 (source: NCBI BLink).  protein_id AT4G27610.3p  transcript_id AT4G27610.3  protein_id AT4G27610.3p  transcript_id AT4G27610.3  
At4g27620	chr4:013790330	0.0	C/13790330-13790516,13790144-13790245,13789059-13789747	AT4G27620.1  CDS  gene_syn T29A15.110, T29A15_110  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27610.3); Has 203 Blast hits to 183 proteins in 55 species: Archae - 6; Bacteria - 14; Metazoa - 37; Fungi - 24; Plants - 43; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT4G27620.1p  transcript_id AT4G27620.1  protein_id AT4G27620.1p  transcript_id AT4G27620.1  
At4g27620	chr4:013790330	0.0	C/13790330-13790516,13790144-13790245,13789059-13789747	AT4G27620.2  CDS  gene_syn T29A15.110, T29A15_110  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27610.3); Has 203 Blast hits to 183 proteins in 55 species: Archae - 6; Bacteria - 14; Metazoa - 37; Fungi - 24; Plants - 43; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT4G27620.2p  transcript_id AT4G27620.2  protein_id AT4G27620.2p  transcript_id AT4G27620.2  
At4g27630	chr4:013795606	0.0	C/13795606-13795790,13795251-13795380,13794875-13794953,13793988-13794076,13793721-13793813,13793365-13793391,13793171-13793257,13792817-13792888,13792229-13792359,13791980-13792133	AT4G27630.1  CDS  gene_syn GPCR-TYPE G PROTEIN 2, GTG2, T29A15.120, T29A15_120  gene GTG2  function Encodes a GPCR-type G protein receptor with nine predicted transmembrane domains. The protein binds abscisic acid (ABA) and is predicted to function as an ABA receptor. It has GTP-binding and GTPase activity and binds to ABA more effectively in the presence of GDP. GTG2 binds to GPA1, the alpha subunit of the heterotrimeric G protein. GPA1 (in its GTP-bound state) affects the GTP binding and GTPase activity of GTG2 and may act to down-regulate GTG2 binding to ABA. GTG2 is widely expressed throughout the plant and appears to be involved in the regulation of several ABA-dependent responses including seed germination, plant development, and promotion of stomatal closure. GTG2 transcript levels do not appear to change in response to ABA or abiotic stresses.  go_component microsome|GO:0005792|19135895|IDA  go_component plasma membrane|GO:0005886|19135895|TAS  go_process response to abscisic acid stimulus|GO:0009737|19135895|IGI  go_process post-embryonic development|GO:0009791|19135895|IGI  go_process vegetative to reproductive phase transition|GO:0010228|19135895|IGI  go_function GTP binding|GO:0005525|19135895|IDA  go_function abscisic acid binding|GO:0010427|19135895|IDA  go_function GTPase binding|GO:0051020|19135895|IPI  product GTG2 (GPCR-TYPE G PROTEIN 2)  note GPCR-TYPE G PROTEIN 2 (GTG2); CONTAINS InterPro DOMAIN/s: G-protein coupled receptor 89-related (InterPro:IPR015672); BEST Arabidopsis thaliana protein match is: GTG1 (GPCR-TYPE G PROTEIN 1) (TAIR:AT1G64990.2); Has 263 Blast hits to 262 proteins in 112 species: Archae - 2; Bacteria - 0; Metazoa - 141; Fungi - 47; Plants - 22; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT4G27630.1p  transcript_id AT4G27630.1  protein_id AT4G27630.1p  transcript_id AT4G27630.1  
At4g27630	chr4:013796819	0.0	C/13796819-13797033,13796530-13796630,13796090-13796194,13795606-13795726,13795251-13795380,13794875-13794953,13793988-13794076,13793721-13793813,13793365-13793391,13793171-13793257,13792817-13792888,13792229-13792359,13791980-13792133	AT4G27630.2  CDS  gene_syn GPCR-TYPE G PROTEIN 2, GTG2, T29A15.120, T29A15_120  gene GTG2  function Encodes a GPCR-type G protein receptor with nine predicted transmembrane domains. The protein binds abscisic acid (ABA) and is predicted to function as an ABA receptor. It has GTP-binding and GTPase activity and binds to ABA more effectively in the presence of GDP. GTG2 binds to GPA1, the alpha subunit of the heterotrimeric G protein. GPA1 (in its GTP-bound state) affects the GTP binding and GTPase activity of GTG2 and may act to down-regulate GTG2 binding to ABA. GTG2 is widely expressed throughout the plant and appears to be involved in the regulation of several ABA-dependent responses including seed germination, plant development, and promotion of stomatal closure. GTG2 transcript levels do not appear to change in response to ABA or abiotic stresses.  go_component microsome|GO:0005792|19135895|IDA  go_component plasma membrane|GO:0005886|19135895|TAS  go_process response to abscisic acid stimulus|GO:0009737|19135895|IGI  go_process post-embryonic development|GO:0009791|19135895|IGI  go_process vegetative to reproductive phase transition|GO:0010228|19135895|IGI  go_function GTP binding|GO:0005525|19135895|IDA  go_function abscisic acid binding|GO:0010427|19135895|IDA  go_function GTPase binding|GO:0051020|19135895|IPI  product GTG2 (GPCR-TYPE G PROTEIN 2)  note GPCR-TYPE G PROTEIN 2 (GTG2); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: G-protein coupled receptor 89-related (InterPro:IPR015672); BEST Arabidopsis thaliana protein match is: GTG1 (GPCR-TYPE G PROTEIN 1) (TAIR:AT1G64990.2); Has 278 Blast hits to 274 proteins in 114 species: Archae - 2; Bacteria - 0; Metazoa - 146; Fungi - 49; Plants - 22; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT4G27630.2p  transcript_id AT4G27630.2  protein_id AT4G27630.2p  transcript_id AT4G27630.2  
At4g27640	chr4:013802702	0.0	C/13802702-13802976,13802487-13802619,13802263-13802399,13802129-13802174,13801821-13802033,13801232-13801735,13800985-13801119,13800686-13800901,13800506-13800595,13800181-13800425,13800006-13800094,13799804-13799844,13799680-13799710,13799479-13799601,13799163-13799380,13798981-13799076,13798788-13798900,13798501-13798636,13798302-13798406,13798013-13798213	AT4G27640.1  CDS  gene_syn T29A15.130, T29A15_130  go_component nucleus|GO:0005634||IEA  go_component nuclear pore|GO:0005643||IEA  go_component cytoplasm|GO:0005737||IEA  go_process protein import into nucleus, docking|GO:0000059||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function binding|GO:0005488||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component nucleus|GO:0005634||ISS  go_component nuclear pore|GO:0005643||ISS  go_component cytoplasm|GO:0005737||ISS  go_process protein import into nucleus, docking|GO:0000059||ISS  go_function protein transporter activity|GO:0008565||ISS  product importin beta-2 subunit family protein  note importin beta-2 subunit family protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: emb2734 (embryo defective 2734); binding / lyase (TAIR:AT5G19820.1); Has 1675 Blast hits to 1570 proteins in 167 species: Archae - 0; Bacteria - 4; Metazoa - 755; Fungi - 480; Plants - 159; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink).  protein_id AT4G27640.1p  transcript_id AT4G27640.1  protein_id AT4G27640.1p  transcript_id AT4G27640.1  
At4g27650	chr4:013807506	0.0	C/13807506-13807556,13807328-13807410,13807034-13807109,13806706-13806780,13806589-13806645,13806090-13806135,13805525-13805600,13805273-13805348,13805149-13805181,13804971-13805039,13804733-13804839,13804245-13804317,13804021-13804059,13803835-13803929,13803620-13803726,13803459-13803532	AT4G27650.1  CDS  gene_syn PEL1, PELOTA, T29A15.140, T29A15_140  gene PEL1  function Encodes Arabidopsis homolog of Drosophila pelota protein.  go_component nucleus|GO:0005634||IEA  go_process translation|GO:0006412||IEA  go_process translational termination|GO:0006415||ISS  go_process meiosis|GO:0007126||ISS  go_function translation release factor activity|GO:0003747||ISS  product PEL1 (PELOTA); translation release factor  note PELOTA (PEL1); FUNCTIONS IN: translation release factor activity; INVOLVED IN: translational termination, meiosis, translation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: eRF1 domain 2 (InterPro:IPR005141), eRF1 domain 3 (InterPro:IPR005142), eRF1 domain 1 (InterPro:IPR005140), Probable translation factor pelota (InterPro:IPR004405); BEST Arabidopsis thaliana protein match is: eukaryotic release factor 1 family protein / eRF1 family protein (TAIR:AT3G58390.1); Has 529 Blast hits to 527 proteins in 213 species: Archae - 127; Bacteria - 0; Metazoa - 118; Fungi - 104; Plants - 28; Viruses - 1; Other Eukaryotes - 151 (source: NCBI BLink).  protein_id AT4G27650.1p  transcript_id AT4G27650.1  protein_id AT4G27650.1p  transcript_id AT4G27650.1  
At4g27652	chr4:013809945	0.0	W/13809945-13810157	AT4G27652.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27657.1); Has 11 Blast hits to 11 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G27652.1p  transcript_id AT4G27652.1  protein_id AT4G27652.1p  transcript_id AT4G27652.1  
At4g27654	chr4:013811836	0.0	W/13811836-13812039	AT4G27654.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G27654.1p  transcript_id AT4G27654.1  protein_id AT4G27654.1p  transcript_id AT4G27654.1  
At4g27657	chr4:013813124	0.0	W/13813124-13813312	AT4G27657.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27652.1); Has 11 Blast hits to 11 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G27657.1p  transcript_id AT4G27657.1  protein_id AT4G27657.1p  transcript_id AT4G27657.1  
At4g27660	chr4:013817728	0.0	C/13817728-13818027,13817526-13817612,13817249-13817410	AT4G27660.1  CDS  gene_syn T29A15.150, T29A15_150  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54150.1); Has 67 Blast hits to 61 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G27660.1p  transcript_id AT4G27660.1  protein_id AT4G27660.1p  transcript_id AT4G27660.1  
At4g27670	chr4:013819646	0.0	C/13819646-13819895,13819048-13819481	AT4G27670.1  CDS  gene_syn HEAT SHOCK PROTEIN 21, HSP21, T29A15.160, T29A15_160  gene HSP21  function chloroplast located small heat shock protein.  go_component chloroplast|GO:0009507||NAS  go_process response to heat|GO:0009408|17059409|IEP  go_process response to heat|GO:0009408|9414549|IEP  go_process response to heat|GO:0009408||ISS  go_process response to high light intensity|GO:0009644|17059409|IEP  go_process response to hydrogen peroxide|GO:0042542|17059409|IEP  product HSP21 (HEAT SHOCK PROTEIN 21)  note HEAT SHOCK PROTEIN 21 (HSP21); INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat; LOCATED IN: chloroplast; EXPRESSED IN: pedicel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: ATHSP23.6-MITO (MITOCHONDRION-LOCALIZED SMALL HEAT SHOCK PROTEIN 23.6) (TAIR:AT4G25200.1); Has 3984 Blast hits to 3984 proteins in 863 species: Archae - 137; Bacteria - 2036; Metazoa - 14; Fungi - 135; Plants - 972; Viruses - 0; Other Eukaryotes - 690 (source: NCBI BLink).  protein_id AT4G27670.1p  transcript_id AT4G27670.1  protein_id AT4G27670.1p  transcript_id AT4G27670.1  
At4g27680	chr4:013821263	0.0	W/13821263-13821460,13821666-13821966,13822193-13822351,13822451-13822746,13822841-13823083	AT4G27680.1  CDS  gene_syn T29A15.170, T29A15_170  go_component endomembrane system|GO:0012505||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATPase activity|GO:0016887||ISS  product MSP1 protein, putative / intramitochondrial sorting protein, putative  note MSP1 protein, putative / intramitochondrial sorting protein, putative; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: MSP1 protein, putative / intramitochondrial sorting protein, putative (TAIR:AT5G53540.1); Has 20791 Blast hits to 19084 proteins in 1738 species: Archae - 856; Bacteria - 5934; Metazoa - 4055; Fungi - 2306; Plants - 1353; Viruses - 23; Other Eukaryotes - 6264 (source: NCBI BLink).  protein_id AT4G27680.1p  transcript_id AT4G27680.1  protein_id AT4G27680.1p  transcript_id AT4G27680.1  
At4g27690	chr4:013824019	0.0	W/13824019-13824021,13824111-13824185,13824318-13824392,13824484-13824556,13824674-13824718,13824913-13825024,13825120-13825186,13825313-13825357,13825662-13825717,13825803-13825978,13826051-13826235	AT4G27690.1  CDS  gene_syn T29A15.180, T29A15_180, VACUOLAR PROTEIN SORTING 26B, VPS26B  gene VPS26B  go_component retromer complex|GO:0030904||IEA  go_process vacuolar transport|GO:0007034||IEA  go_process intracellular protein transport|GO:0006886||ISS  go_process retrograde transport, endosome to Golgi|GO:0042147||ISS  go_function molecular_function|GO:0003674||ND  product VPS26B (VACUOLAR PROTEIN SORTING 26B)  note VACUOLAR PROTEIN SORTING 26B (VPS26B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport, vacuolar transport, retrograde transport, endosome to Golgi; LOCATED IN: retromer complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 26 (InterPro:IPR005377); BEST Arabidopsis thaliana protein match is: VPS26A (VACUOLAR PROTEIN SORTING 26A) (TAIR:AT5G53530.1); Has 568 Blast hits to 568 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 302; Fungi - 87; Plants - 60; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT4G27690.1p  transcript_id AT4G27690.1  protein_id AT4G27690.1p  transcript_id AT4G27690.1  
At4g27690	chr4:013824324	0.0	W/13824324-13824392,13824484-13824556,13824674-13824718,13824913-13825024,13825120-13825186,13825313-13825357,13825662-13825717,13825803-13825978,13826051-13826235	AT4G27690.2  CDS  gene_syn T29A15.180, T29A15_180, VACUOLAR PROTEIN SORTING 26B, VPS26B  gene VPS26B  go_component retromer complex|GO:0030904||IEA  go_process vacuolar transport|GO:0007034||IEA  go_process intracellular protein transport|GO:0006886||ISS  go_process retrograde transport, endosome to Golgi|GO:0042147||ISS  go_function molecular_function|GO:0003674||ND  product VPS26B (VACUOLAR PROTEIN SORTING 26B)  note VACUOLAR PROTEIN SORTING 26B (VPS26B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport, vacuolar transport, retrograde transport, endosome to Golgi; LOCATED IN: retromer complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 26 (InterPro:IPR005377); BEST Arabidopsis thaliana protein match is: VPS26A (VACUOLAR PROTEIN SORTING 26A) (TAIR:AT5G53530.1); Has 564 Blast hits to 564 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 298; Fungi - 87; Plants - 60; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT4G27690.2p  transcript_id AT4G27690.2  protein_id AT4G27690.2p  transcript_id AT4G27690.2  
At4g27700	chr4:013827502	0.0	C/13827502-13827673,13827347-13827393,13827173-13827265,13826932-13827070,13826736-13826838,13826541-13826661	AT4G27700.1  CDS  gene_syn T29A15.190, T29A15_190  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process aging|GO:0007568||ISS  go_function molecular_function|GO:0003674||ND  product rhodanese-like domain-containing protein  note rhodanese-like domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: rhodanese-like domain-containing protein (TAIR:AT3G08920.1); Has 465 Blast hits to 463 proteins in 140 species: Archae - 23; Bacteria - 218; Metazoa - 0; Fungi - 0; Plants - 156; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT4G27700.1p  transcript_id AT4G27700.1  protein_id AT4G27700.1p  transcript_id AT4G27700.1  
At4g27710	chr4:013828520	0.0	W/13828520-13828802,13828893-13829116,13829193-13829440,13829546-13829918,13829989-13830417	AT4G27710.1  CDS  gene_syn CYP709B3, T29A15.200, T29A15_200  gene CYP709B3  function member of CYP709B  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP709B3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP709B3; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP709B2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT2G46950.1); Has 21615 Blast hits to 21551 proteins in 1152 species: Archae - 30; Bacteria - 2160; Metazoa - 10010; Fungi - 3604; Plants - 4864; Viruses - 3; Other Eukaryotes - 944 (source: NCBI BLink).  protein_id AT4G27710.1p  transcript_id AT4G27710.1  protein_id AT4G27710.1p  transcript_id AT4G27710.1  
At4g27720	chr4:013831203	0.0	W/13831203-13831353,13831685-13831829,13831912-13832080,13832165-13832435,13832578-13832843,13832950-13833165,13833265-13833367,13833460-13833521	AT4G27720.1  CDS  gene_syn T29A15.210, T29A15_210  go_component plasma membrane|GO:0005886|15060130|IDA  product unknown protein  note LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF791 (InterPro:IPR008509), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64650.1); Has 496 Blast hits to 491 proteins in 183 species: Archae - 5; Bacteria - 234; Metazoa - 75; Fungi - 33; Plants - 96; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT4G27720.1p  transcript_id AT4G27720.1  protein_id AT4G27720.1p  transcript_id AT4G27720.1  
At4g27730	chr4:013835992	0.0	C/13835992-13836468,13835249-13835916,13834723-13835167,13834024-13834644	AT4G27730.1  CDS  gene_syn ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, ATOPT6, OLIGOPEPTIDE TRANSPORTER 1, OPT6, T29A15.220, T29A15_220  gene OPT6  function oligopeptide transporter  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|11788749|ISS  go_process oligopeptide transport|GO:0006857|11788749|IGI  go_function oligopeptide transporter activity|GO:0015198|11788749|IGI  go_function oligopeptide transporter activity|GO:0015198||ISS  product OPT6 (OLIGOPEPTIDE TRANSPORTER 1); oligopeptide transporter  note OLIGOPEPTIDE TRANSPORTER 1 (OPT6); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Tetrapeptide transporter, OPT1/isp4 (InterPro:IPR004648), Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: ATOPT9 (ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 9); oligopeptide transporter (TAIR:AT5G53510.1); Has 728 Blast hits to 715 proteins in 73 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 537; Plants - 171; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G27730.1p  transcript_id AT4G27730.1  protein_id AT4G27730.1p  transcript_id AT4G27730.1  
At4g27740	chr4:013839148	0.0	W/13839148-13839240,13839392-13839616	AT4G27740.1  CDS  gene_syn T29A15.230, T29A15_230  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Yippee-like protein (InterPro:IPR004910); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27745.1); Has 684 Blast hits to 682 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 389; Fungi - 132; Plants - 111; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT4G27740.1p  transcript_id AT4G27740.1  protein_id AT4G27740.1p  transcript_id AT4G27740.1  
At4g27745	chr4:013840530	0.0	W/13840530-13840622,13841052-13841279	AT4G27745.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Yippee-like protein (InterPro:IPR004910); BEST Arabidopsis thaliana protein match is: yippee family protein (TAIR:AT5G53940.1); Has 697 Blast hits to 697 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 401; Fungi - 132; Plants - 110; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT4G27745.1p  transcript_id AT4G27745.1  protein_id AT4G27745.1p  transcript_id AT4G27745.1  
At4g27750	chr4:013841708	0.0	W/13841708-13842020,13842109-13842314,13842558-13842656,13842849-13842922,13843276-13843501	AT4G27750.1  CDS  gene_syn IMPAIRED SUCROSE INDUCTION 1, ISI1, T29A15.240, T29A15_240  gene ISI1  function A genetic locus involved in sugar sensing and coordinating carbohydrate synthesis and utilization by the whole plant. Lines carrying mutations in this gene shows restricted carbohydrate allocation to plant growth and seed set, elevated chlorophyll levels, and reduced sugar induction of starch biosynthesis.  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of carbohydrate metabolic process|GO:0006109|16805736|IMP  go_process sucrose mediated signaling|GO:0009745||IMP  product ISI1 (IMPAIRED SUCROSE INDUCTION 1); binding  note IMPAIRED SUCROSE INDUCTION 1 (ISI1); FUNCTIONS IN: binding; INVOLVED IN: sucrose mediated signaling, regulation of carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 53 Blast hits to 53 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 28; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G27750.1p  transcript_id AT4G27750.1  protein_id AT4G27750.1p  transcript_id AT4G27750.1  
At4g27760	chr4:013844151	0.0	W/13844151-13844374,13844498-13844618,13844846-13844963,13845257-13845393,13845811-13845912,13846034-13846126,13846228-13846563	AT4G27760.1  CDS  gene_syn FEY, FEY3, FOREVER YOUNG  gene FEY  function Encodes an oxidoreductase required for vegetative shoot apex development. Mutants display disruptions in leaf positioning and meristem maintenance.  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process multicellular organismal development|GO:0007275|7849756|IMP  go_process meristem maintenance|GO:0010073|7849756|IMP  go_function oxidoreductase activity|GO:0016491||ISS  product FEY (FOREVER YOUNG); binding / catalytic/ oxidoreductase  note FOREVER YOUNG (FEY); FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: multicellular organismal development, meristem maintenance; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: binding / catalytic/ oxidoreductase (TAIR:AT5G53090.1); Has 48670 Blast hits to 48642 proteins in 1824 species: Archae - 305; Bacteria - 28844; Metazoa - 4340; Fungi - 2400; Plants - 1191; Viruses - 0; Other Eukaryotes - 11590 (source: NCBI BLink).  protein_id AT4G27760.1p  transcript_id AT4G27760.1  protein_id AT4G27760.1p  transcript_id AT4G27760.1  
At4g27765	chr4:013846971	0.0	W/13846971-13847161	AT4G27765.1  miRNA  gene_syn MICRORNA828A, MIR828A  gene MIR828A  function Encodes a microRNA that targets several MYB family members and the tasiRNA-generating transcript TAS4. Cleavage of the TAS4 transcript by miR828 initiates processing of TAS4 transcripts in a 21-nucleotide register. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCUUGCUUAAAUGAGUAUUCCA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR828A (MICRORNA828A); miRNA  transcript_id AT4G27765.1  
At4g27780	chr4:013847774	0.0	W/13847774-13848261,13848538-13848640,13848721-13848824,13849088-13849179,13849265-13849362,13849450-13849629	AT4G27780.1  CDS  gene_syn ACBP2, ACYL-COA BINDING PROTEIN ACBP 2, ACYL-COA BINDING PROTEIN ACBP2, T27E11.20, T27E11_20  gene ACBP2  function Encodes acyl-CoA-binding protein with ankyrin repeats  go_component endoplasmic reticulum|GO:0005783|12650615|IDA  go_component plasma membrane|GO:0005886|12650615|IDA  go_process lipid transport|GO:0006869|12650615|TAS  go_process response to lead ion|GO:0010288|18182029|IEP  go_function acyl-CoA binding|GO:0000062||IDA  go_function lead ion binding|GO:0032791|18182029|IDA  product ACBP2 (ACYL-COA BINDING PROTEIN ACBP 2); acyl-CoA binding / lead ion binding  note ACYL-COA BINDING PROTEIN ACBP 2 (ACBP2); FUNCTIONS IN: lead ion binding, acyl-CoA binding; INVOLVED IN: response to lead ion, lipid transport; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Acyl-CoA-binding protein, ACBP (InterPro:IPR000582), FERM/acyl-CoA-binding protein, 3-helical bundle (InterPro:IPR014352), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ACBP1 (ACYL-COA BINDING PROTEIN 1); acyl-CoA binding / lead ion binding (TAIR:AT5G53470.1); Has 76182 Blast hits to 23830 proteins in 896 species: Archae - 99; Bacteria - 5027; Metazoa - 41083; Fungi - 4578; Plants - 1899; Viruses - 856; Other Eukaryotes - 22640 (source: NCBI BLink).  protein_id AT4G27780.1p  transcript_id AT4G27780.1  protein_id AT4G27780.1p  transcript_id AT4G27780.1  
At4g27790	chr4:013850066	0.0	W/13850066-13850552,13850638-13850740,13850821-13850886,13850978-13851233,13851363-13851488	AT4G27790.1  CDS  gene_syn T27E11.30, T27E11_30  go_component endomembrane system|GO:0012505||IEA  go_function calcium ion binding|GO:0005509||IEA  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT5G08580.1); Has 3187 Blast hits to 3073 proteins in 579 species: Archae - 0; Bacteria - 3; Metazoa - 1165; Fungi - 630; Plants - 1001; Viruses - 0; Other Eukaryotes - 388 (source: NCBI BLink).  protein_id AT4G27790.1p  transcript_id AT4G27790.1  protein_id AT4G27790.1p  transcript_id AT4G27790.1  
At4g27800	chr4:013853778	0.0	C/13853778-13854091,13853574-13853702,13853380-13853485,13853196-13853306,13853005-13853084,13852871-13852924,13852661-13852777,13852506-13852564,13852405-13852415	AT4G27800.3  CDS  gene_syn T27E11.40, T27E11_40  go_component chloroplast|GO:0009507|18431481|IDA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleolus|GO:0005730|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component protein serine/threonine phosphatase complex|GO:0008287||ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C PPH1 / PP2C PPH1 (PPH1)  note protein phosphatase 2C PPH1 / PP2C PPH1 (PPH1); FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: nucleolus, nucleus, chloroplast, protein serine/threonine phosphatase complex, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT4G31860.1); Has 3741 Blast hits to 3733 proteins in 246 species: Archae - 0; Bacteria - 37; Metazoa - 1147; Fungi - 452; Plants - 1268; Viruses - 9; Other Eukaryotes - 828 (source: NCBI BLink).  protein_id AT4G27800.3p  transcript_id AT4G27800.3  protein_id AT4G27800.3p  transcript_id AT4G27800.3  
At4g27800	chr4:013853778	0.0	C/13853778-13854091,13853574-13853702,13853380-13853485,13853196-13853306,13853005-13853084,13852871-13852924,13852661-13852777,13852510-13852564,13852374-13852415	AT4G27800.2  CDS  gene_syn T27E11.40, T27E11_40  go_component chloroplast|GO:0009507|18431481|IDA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleolus|GO:0005730|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component protein serine/threonine phosphatase complex|GO:0008287||ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C PPH1 / PP2C PPH1 (PPH1)  note protein phosphatase 2C PPH1 / PP2C PPH1 (PPH1); FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: nucleolus, nucleus, chloroplast, protein serine/threonine phosphatase complex, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT4G31860.1); Has 3756 Blast hits to 3748 proteins in 246 species: Archae - 0; Bacteria - 37; Metazoa - 1147; Fungi - 450; Plants - 1271; Viruses - 9; Other Eukaryotes - 842 (source: NCBI BLink).  protein_id AT4G27800.2p  transcript_id AT4G27800.2  protein_id AT4G27800.2p  transcript_id AT4G27800.2  
At4g27800	chr4:013853778	0.0	C/13853778-13854091,13853574-13853702,13853380-13853485,13853196-13853306,13853005-13853084,13852871-13852924,13852661-13852777,13852510-13852564,13852383-13852415,13852252-13852298,13852013-13852133	AT4G27800.1  CDS  gene_syn T27E11.40, T27E11_40  go_component chloroplast|GO:0009507|18431481|IDA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleolus|GO:0005730|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component protein serine/threonine phosphatase complex|GO:0008287||ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C PPH1 / PP2C PPH1 (PPH1)  note protein phosphatase 2C PPH1 / PP2C PPH1 (PPH1); FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: nucleolus, nucleus, chloroplast, protein serine/threonine phosphatase complex, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C, N-terminal (InterPro:IPR014045), Protein phosphatase 2C (InterPro:IPR015655); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT1G43900.1); Has 3934 Blast hits to 3925 proteins in 294 species: Archae - 1; Bacteria - 130; Metazoa - 1167; Fungi - 465; Plants - 1291; Viruses - 9; Other Eukaryotes - 871 (source: NCBI BLink).  protein_id AT4G27800.1p  transcript_id AT4G27800.1  protein_id AT4G27800.1p  transcript_id AT4G27800.1  
At4g27810	chr4:013855168	0.0	C/13855168-13855671,13854641-13854727	AT4G27810.1  CDS  gene_syn T27E11.50, T27E11_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G53030.1); Has 40 Blast hits to 35 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G27810.1p  transcript_id AT4G27810.1  protein_id AT4G27810.1p  transcript_id AT4G27810.1  
At4g27820	chr4:013860446	0.0	C/13860446-13860571,13860292-13860355,13860036-13860085,13859866-13859941,13859710-13859781,13859538-13859625,13859190-13859445,13859005-13859120,13858702-13858931,13858589-13858614,13858422-13858509,13858220-13858310,13857873-13858110	AT4G27820.1  CDS  gene_syn BETA GLUCOSIDASE 9, BGLU9, T27E11.60, T27E11_60  gene BGLU9  go_component peroxisome|GO:0005777|12154131|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU9 (BETA GLUCOSIDASE 9); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 9 (BGLU9); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU10 (BETA GLUCOSIDASE 10); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT4G27830.1); Has 5732 Blast hits to 5489 proteins in 797 species: Archae - 100; Bacteria - 3105; Metazoa - 609; Fungi - 135; Plants - 850; Viruses - 0; Other Eukaryotes - 933 (source: NCBI BLink).  protein_id AT4G27820.1p  transcript_id AT4G27820.1  protein_id AT4G27820.1p  transcript_id AT4G27820.1  
At4g27830	chr4:013864364	0.0	C/13864364-13864489,13864200-13864263,13863931-13863989,13863764-13863839,13863602-13863673,13863437-13863524,13863085-13863340,13862900-13863015,13862595-13862821,13862483-13862508,13862317-13862404,13862116-13862206,13861794-13862031	AT4G27830.1  CDS  gene_syn BETA GLUCOSIDASE 10, BGLU10, T27E11.70, T27E11_70  gene BGLU10  go_component vacuole|GO:0005773|15539469|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU10 (BETA GLUCOSIDASE 10); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 10 (BGLU10); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU9 (BETA GLUCOSIDASE 9); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT4G27820.1); Has 5737 Blast hits to 5502 proteins in 797 species: Archae - 98; Bacteria - 3121; Metazoa - 603; Fungi - 137; Plants - 848; Viruses - 0; Other Eukaryotes - 930 (source: NCBI BLink).  protein_id AT4G27830.1p  transcript_id AT4G27830.1  protein_id AT4G27830.1p  transcript_id AT4G27830.1  
At4g27840	chr4:013865268	0.0	C/13865268-13866050	AT4G27840.1  CDS  gene_syn T27E11.80, T27E11_80  go_component endomembrane system|GO:0012505||IEA  go_process transport|GO:0006810||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: vesicle-associated membrane protein-related (TAIR:AT5G52990.1); Has 165 Blast hits to 165 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 165; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G27840.1p  transcript_id AT4G27840.1  protein_id AT4G27840.1p  transcript_id AT4G27840.1  
At4g27850	chr4:013870382	0.0	W/13870382-13870457,13870855-13871127,13871307-13871969,13872057-13872277,13872396-13872451,13872534-13872737,13873269-13873509	AT4G27850.1  CDS  gene_syn T27E11.90, T27E11_90  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product proline-rich family protein  note proline-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage; Has 179044 Blast hits to 58512 proteins in 1861 species: Archae - 590; Bacteria - 33761; Metazoa - 80286; Fungi - 17780; Plants - 16992; Viruses - 4871; Other Eukaryotes - 24764 (source: NCBI BLink).  protein_id AT4G27850.1p  transcript_id AT4G27850.1  protein_id AT4G27850.1p  transcript_id AT4G27850.1  
At4g27860	chr4:013873808	0.0	W/13873808-13873949,13874079-13874444,13874520-13874864,13874954-13875037,13875112-13875246,13875323-13875577,13875663-13875724,13875794-13876240	AT4G27860.1  CDS  gene_syn T27E11.100, T27E11_100  go_component integral to membrane|GO:0016021||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane family protein  note integral membrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: embryo, hypocotyl, pedicel, root, leaf; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF125, transmembrane (InterPro:IPR008217), Cytokine, IL-1-like (InterPro:IPR008996); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT4G27870.1); Has 126 Blast hits to 115 proteins in 34 species: Archae - 0; Bacteria - 9; Metazoa - 10; Fungi - 7; Plants - 56; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT4G27860.1p  transcript_id AT4G27860.1  protein_id AT4G27860.1p  transcript_id AT4G27860.1  
At4g27870	chr4:013878983	0.0	W/13878983-13879340,13879846-13880346,13880451-13880594,13880822-13880974,13881167-13881499,13881669-13881902,13882026-13882087,13882179-13882679	AT4G27870.1  CDS  gene_syn T27E11.110, T27E11_110  go_component membrane|GO:0016020|17432890|IDA  go_component integral to membrane|GO:0016021||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane family protein  note integral membrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF125, transmembrane (InterPro:IPR008217); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT4G27860.1); Has 226 Blast hits to 203 proteins in 58 species: Archae - 0; Bacteria - 22; Metazoa - 57; Fungi - 12; Plants - 65; Viruses - 4; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT4G27870.1p  transcript_id AT4G27870.1  protein_id AT4G27870.1p  transcript_id AT4G27870.1  
At4g27875	chr4:013882917	0.0	C/13882917-13882988	AT4G27875.1  tRNA  gene_syn 67167.TRNA-GLN-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gln (anticodon: CTG)  transcript_id AT4G27875.1  
At4g27880	chr4:013883623	0.0	W/13883623-13883853,13884089-13884475,13884562-13884927	AT4G27880.1  CDS  gene_syn T27E11.120, T27E11_120  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_process multicellular organismal development|GO:0007275||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_component mitochondrion|GO:0005739|14671022|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_process multicellular organismal development|GO:0007275||ISS  product seven in absentia (SINA) family protein  note seven in absentia (SINA) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Zinc finger, SIAH-type (InterPro:IPR013010), Zinc finger, RING-type (InterPro:IPR001841), Seven in absentia protein, TRAF-like domain (InterPro:IPR018121), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven in absentia protein (InterPro:IPR004162), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: seven in absentia (SINA) family protein (TAIR:AT3G61790.1); Has 1369 Blast hits to 1361 proteins in 631 species: Archae - 0; Bacteria - 0; Metazoa - 1068; Fungi - 9; Plants - 249; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT4G27880.1p  transcript_id AT4G27880.1  protein_id AT4G27880.1p  transcript_id AT4G27880.1  
At4g27885	chr4:013885191	0.0	C/13885191-13885263	AT4G27885.1  tRNA  gene_syn 67167.TRNA-ALA-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: CGC)  transcript_id AT4G27885.1  
At4g27890	chr4:013886033	0.0	W/13886033-13886402,13886595-13886983,13887098-13887220	AT4G27890.1  CDS  gene_syn T27E11.130, T27E11_130  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product nuclear movement family protein  note nuclear movement family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, LP.12 twelve leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: CS domain (InterPro:IPR007052), HSP20-like chaperone (InterPro:IPR008978), CS (InterPro:IPR017447); BEST Arabidopsis thaliana protein match is: nuclear movement family protein (TAIR:AT5G53400.1); Has 849 Blast hits to 814 proteins in 159 species: Archae - 0; Bacteria - 22; Metazoa - 436; Fungi - 74; Plants - 87; Viruses - 0; Other Eukaryotes - 230 (source: NCBI BLink).  protein_id AT4G27890.1p  transcript_id AT4G27890.1  protein_id AT4G27890.1p  transcript_id AT4G27890.1  
At4g27900	chr4:013890858	0.0	W/13890858-13890965,13891770-13892225,13892443-13892583,13892697-13892777	AT4G27900.1  CDS  gene_syn T13J8.10, T13J8_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G53420.1); Has 876 Blast hits to 876 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 853; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT4G27900.1p  transcript_id AT4G27900.1  protein_id AT4G27900.1p  transcript_id AT4G27900.1  
At4g27900	chr4:013890858	0.0	W/13890858-13890965,13891770-13892225,13892443-13892583,13892697-13892777	AT4G27900.2  CDS  gene_syn T13J8.10, T13J8_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G53420.1); Has 876 Blast hits to 876 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 853; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT4G27900.2p  transcript_id AT4G27900.2  protein_id AT4G27900.2p  transcript_id AT4G27900.2  
At4g27910	chr4:013894694	0.0	W/13894694-13895473,13895559-13895614,13895686-13895899,13896013-13896141,13896239-13896307,13896402-13896470,13896556-13896647,13896739-13896831,13896992-13897127,13897250-13897352,13897443-13897542,13897868-13897992,13898092-13898237,13898342-13898446,13898691-13898755,13898848-13899058,13899142-13899228,13899314-13899373,13899467-13899556,13899646-13899732,13899820-13899894,13899976-13900076,13900166-13900256	AT4G27910.1  CDS  gene_syn ATX4, SDG16, SET DOMAIN PROTEIN 16, T13J8.20, T13J8_20  gene SDG16  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product SDG16 (SET DOMAIN PROTEIN 16); protein binding / zinc ion binding  note SET DOMAIN PROTEIN 16 (SDG16); FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), Zinc finger, PHD-type (InterPro:IPR001965), Post-SET zinc-binding region (InterPro:IPR003616), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: SDG29 (SET DOMAIN GROUP 29); DNA binding / protein binding / zinc ion binding (TAIR:AT5G53430.1); Has 5250 Blast hits to 5150 proteins in 350 species: Archae - 2; Bacteria - 311; Metazoa - 2623; Fungi - 543; Plants - 576; Viruses - 0; Other Eukaryotes - 1195 (source: NCBI BLink).  protein_id AT4G27910.1p  transcript_id AT4G27910.1  protein_id AT4G27910.1p  transcript_id AT4G27910.1  
At4g27920	chr4:013901220	0.0	W/13901220-13901342,13901425-13901643,13901730-13901939	AT4G27920.1  CDS  gene_syn T13J8.30, T13J8_30  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G53160.2); Has 184 Blast hits to 184 proteins in 20 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 181; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G27920.1p  transcript_id AT4G27920.1  protein_id AT4G27920.1p  transcript_id AT4G27920.1  
At4g27930	chr4:013902920	0.0	C/13902920-13902978,13902635-13902875	AT4G27930.1  CDS  gene_syn T13J8.40, T13J8_40  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G27930.1p  transcript_id AT4G27930.1  protein_id AT4G27930.1p  transcript_id AT4G27930.1  
At4g27940	chr4:013904745	0.0	W/13904745-13905002,13905097-13905186,13905290-13905418,13905570-13905629,13905709-13905879,13906021-13906123,13906325-13906416,13906524-13906673,13906750-13906808,13906907-13907036	AT4G27940.1  CDS  gene_syn T13J8.50, T13J8_50  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function binding|GO:0005488||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: mitochondrial substrate carrier family protein (TAIR:AT2G46320.1); Has 13258 Blast hits to 8472 proteins in 324 species: Archae - 0; Bacteria - 0; Metazoa - 6659; Fungi - 3535; Plants - 2092; Viruses - 0; Other Eukaryotes - 972 (source: NCBI BLink).  protein_id AT4G27940.1p  transcript_id AT4G27940.1  protein_id AT4G27940.1p  transcript_id AT4G27940.1  
At4g27950	chr4:013909732	0.0	C/13909732-13910739	AT4G27950.1  CDS  gene_syn CRF4, CYTOKININ RESPONSE FACTOR 4, T13J8.60, T13J8_60  gene CRF4  function encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process transcription factor import into nucleus|GO:0042991|16832061|IDA  go_process leaf development|GO:0048366|16832061|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product CRF4 (CYTOKININ RESPONSE FACTOR 4); DNA binding / transcription factor  note CYTOKININ RESPONSE FACTOR 4 (CRF4); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, leaf development, transcription factor import into nucleus; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: CRF3 (CYTOKININ RESPONSE FACTOR 3); DNA binding / transcription factor (TAIR:AT5G53290.1); Has 3979 Blast hits to 3754 proteins in 202 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 2; Plants - 3959; Viruses - 2; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT4G27950.1p  transcript_id AT4G27950.1  protein_id AT4G27950.1p  transcript_id AT4G27950.1  
At4g27960	chr4:013917134	0.0	C/13917134-13917203,13916573-13916700,13916302-13916406,13916065-13916208	AT4G27960.1  CDS  gene_syn T13J8.70, T13J8_70, UBC9, UBIQUITIN CONJUGATING ENZYME 9, UBIQUITIN-PROTEIN LIGASE  gene UBC9  function ubiquitin conjugating enzyme  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC9 (UBIQUITIN CONJUGATING ENZYME 9); ubiquitin-protein ligase  note UBIQUITIN CONJUGATING ENZYME 9 (UBC9); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC10 (ubiquitin-conjugating enzyme 10); ubiquitin-protein ligase (TAIR:AT5G53300.2); Has 7907 Blast hits to 7887 proteins in 310 species: Archae - 0; Bacteria - 0; Metazoa - 3812; Fungi - 1537; Plants - 1140; Viruses - 22; Other Eukaryotes - 1396 (source: NCBI BLink).  protein_id AT4G27960.1p  transcript_id AT4G27960.1  protein_id AT4G27960.1p  transcript_id AT4G27960.1  
At4g27960	chr4:013917134	0.0	C/13917134-13917293,13916573-13916700,13916302-13916406,13916065-13916208	AT4G27960.2  CDS  gene_syn T13J8.70, T13J8_70, UBC9, UBIQUITIN CONJUGATING ENZYME 9, UBIQUITIN-PROTEIN LIGASE  gene UBC9  function ubiquitin conjugating enzyme  go_component endomembrane system|GO:0012505||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC9 (UBIQUITIN CONJUGATING ENZYME 9); ubiquitin-protein ligase  note UBIQUITIN CONJUGATING ENZYME 9 (UBC9); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC10 (ubiquitin-conjugating enzyme 10); ubiquitin-protein ligase (TAIR:AT5G53300.2); Has 7914 Blast hits to 7894 proteins in 310 species: Archae - 0; Bacteria - 0; Metazoa - 3817; Fungi - 1537; Plants - 1140; Viruses - 22; Other Eukaryotes - 1398 (source: NCBI BLink).  protein_id AT4G27960.2p  transcript_id AT4G27960.2  protein_id AT4G27960.2p  transcript_id AT4G27960.2  
At4g27970	chr4:013919751	0.0	C/13919751-13920122,13918894-13919664,13918762-13918793,13918290-13918674	AT4G27970.1  CDS  gene_syn SLAC1 HOMOLOGUE 2, SLAH2, T13J8.80, T13J8_80  gene SLAH2  function Encodes a protein with ten predicted transmembrane helices. The SLAH2 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. But, it is not expressed in guard cells and cannot complement a slac1-2 mutant suggesting that it performs a different function. SLAH2:GFP localizes to the plasma membrane.  go_component plasma membrane|GO:0005886|18305482|IDA  go_component integral to membrane|GO:0016021||ISS  go_function transporter activity|GO:0005215||ISS  product SLAH2 (SLAC1 HOMOLOGUE 2); transporter  note SLAC1 HOMOLOGUE 2 (SLAH2); FUNCTIONS IN: transporter activity; LOCATED IN: integral to membrane, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: C4-dicarboxylate transporter/malic acid transport protein (InterPro:IPR004695); BEST Arabidopsis thaliana protein match is: SLAH3 (SLAC1 HOMOLOGUE 3); transporter (TAIR:AT5G24030.1); Has 554 Blast hits to 554 proteins in 218 species: Archae - 18; Bacteria - 370; Metazoa - 0; Fungi - 41; Plants - 89; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT4G27970.1p  transcript_id AT4G27970.1  protein_id AT4G27970.1p  transcript_id AT4G27970.1  
At4g27980	chr4:013921677	0.0	W/13921677-13923374	AT4G27980.1  CDS  gene_syn T13J8.90, T13J8_90  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04960.3); Has 63680 Blast hits to 35236 proteins in 1593 species: Archae - 730; Bacteria - 6914; Metazoa - 32637; Fungi - 4186; Plants - 2109; Viruses - 194; Other Eukaryotes - 16910 (source: NCBI BLink).  protein_id AT4G27980.1p  transcript_id AT4G27980.1  protein_id AT4G27980.1p  transcript_id AT4G27980.1  
At4g27990	chr4:013923991	0.0	C/13923991-13924647	AT4G27990.1  CDS  gene_syn T13J8.100, T13J8_100  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product YGGT family protein  note YGGT family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function YGGT (InterPro:IPR003425); BEST Arabidopsis thaliana protein match is: emb1990 (embryo defective 1990) (TAIR:AT3G07430.1); Has 489 Blast hits to 489 proteins in 148 species: Archae - 0; Bacteria - 276; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink).  protein_id AT4G27990.1p  transcript_id AT4G27990.1  protein_id AT4G27990.1p  transcript_id AT4G27990.1  
At4g28000	chr4:013925456	0.0	W/13925456-13925670,13925780-13925901,13925991-13926079,13926162-13926197,13926285-13926378,13926458-13926500,13926602-13926702,13926829-13926893,13926973-13927466,13927552-13927636,13927706-13927834,13927926-13928494,13928584-13928719,13928802-13928870,13928961-13929092,13929167-13929280	AT4G28000.1  CDS  gene_syn T13J8.110, T13J8_110  go_component endomembrane system|GO:0012505||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATPase activity|GO:0016887||ISS  product ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding  note ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATP binding / nucleoside-triphosphatase/ nucleotide binding (TAIR:AT5G52882.1); Has 26600 Blast hits to 24988 proteins in 1852 species: Archae - 909; Bacteria - 9813; Metazoa - 4059; Fungi - 2393; Plants - 1674; Viruses - 23; Other Eukaryotes - 7729 (source: NCBI BLink).  protein_id AT4G28000.1p  transcript_id AT4G28000.1  protein_id AT4G28000.1p  transcript_id AT4G28000.1  
At4g28005	chr4:013930126	0.0	C/13930126-13930191,13929887-13930015,13929655-13929807	AT4G28005.1  CDS  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: NADH-ubiquinone oxidoreductase-related (TAIR:AT5G52840.1); Has 20 Blast hits to 20 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G28005.1p  transcript_id AT4G28005.1  protein_id AT4G28005.1p  transcript_id AT4G28005.1  
At4g28010	chr4:013930379	0.0	W/13930379-13932493	AT4G28010.1  CDS  gene_syn T13J8.120, T13J8_120  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G62670.1); Has 27713 Blast hits to 6108 proteins in 193 species: Archae - 5; Bacteria - 29; Metazoa - 747; Fungi - 685; Plants - 24892; Viruses - 0; Other Eukaryotes - 1355 (source: NCBI BLink).  protein_id AT4G28010.1p  transcript_id AT4G28010.1  protein_id AT4G28010.1p  transcript_id AT4G28010.1  
At4g28020	chr4:013935162	0.0	C/13935162-13935249,13934938-13935059,13934688-13934788,13934399-13934594,13934229-13934321,13934080-13934139,13933927-13934001,13933699-13933779,13933389-13933628	AT4G28020.1  CDS  gene_syn T13J8.130, T13J8_130  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0066 (InterPro:IPR001378); Has 1330 Blast hits to 1328 proteins in 575 species: Archae - 150; Bacteria - 957; Metazoa - 95; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).  protein_id AT4G28020.1p  transcript_id AT4G28020.1  protein_id AT4G28020.1p  transcript_id AT4G28020.1  
At4g28025	chr4:013937258	0.0	C/13937258-13937367,13936452-13936536,13936167-13936292,13935972-13936073,13935836-13935886	AT4G28025.1  CDS  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G28025.1p  transcript_id AT4G28025.1  protein_id AT4G28025.1p  transcript_id AT4G28025.1  
At4g28030	chr4:013938859	0.0	C/13938859-13939131,13938470-13938625,13938211-13938306,13938001-13938121,13937748-13937893	AT4G28030.2  CDS  gene_syn T13J8.140, T13J8_140  go_component chloroplast|GO:0009507|18431481|IDA  go_process metabolic process|GO:0008152||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_process metabolic process|GO:0008152||ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product GCN5-related N-acetyltransferase (GNAT) family protein  note GCN5-related N-acetyltransferase (GNAT) family protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: GCN5-related N-acetyltransferase (GNAT) family protein (TAIR:AT2G06025.1); Has 75 Blast hits to 74 proteins in 25 species: Archae - 0; Bacteria - 28; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G28030.2p  transcript_id AT4G28030.2  protein_id AT4G28030.2p  transcript_id AT4G28030.2  
At4g28030	chr4:013938859	0.0	C/13938859-13939131,13938470-13938625,13938211-13938306,13938001-13938121,13937748-13937926	AT4G28030.1  CDS  gene_syn T13J8.140, T13J8_140  go_component chloroplast|GO:0009507|18431481|IDA  go_process metabolic process|GO:0008152||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_process metabolic process|GO:0008152||ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product GCN5-related N-acetyltransferase (GNAT) family protein  note GCN5-related N-acetyltransferase (GNAT) family protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: GCN5-related N-acetyltransferase (GNAT) family protein (TAIR:AT2G06025.1); Has 235 Blast hits to 234 proteins in 78 species: Archae - 4; Bacteria - 115; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT4G28030.1p  transcript_id AT4G28030.1  protein_id AT4G28030.1p  transcript_id AT4G28030.1  
At4g28040	chr4:013940881	0.0	W/13940881-13941059,13941140-13941325,13941408-13941926,13942006-13942201	AT4G28040.1  CDS  gene_syn T13J8.150, T13J8_150  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  product nodulin MtN21 family protein  note nodulin MtN21 family protein; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT4G30420.1); Has 1263 Blast hits to 1256 proteins in 229 species: Archae - 5; Bacteria - 428; Metazoa - 2; Fungi - 0; Plants - 623; Viruses - 0; Other Eukaryotes - 205 (source: NCBI BLink).  protein_id AT4G28040.1p  transcript_id AT4G28040.1  protein_id AT4G28040.1p  transcript_id AT4G28040.1  
At4g28040	chr4:013940881	0.0	W/13940881-13941059,13941140-13941325,13941408-13941926,13942006-13942201	AT4G28040.2  CDS  gene_syn T13J8.150, T13J8_150  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  product nodulin MtN21 family protein  note nodulin MtN21 family protein; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT4G30420.1); Has 1263 Blast hits to 1256 proteins in 229 species: Archae - 5; Bacteria - 428; Metazoa - 2; Fungi - 0; Plants - 623; Viruses - 0; Other Eukaryotes - 205 (source: NCBI BLink).  protein_id AT4G28040.2p  transcript_id AT4G28040.2  protein_id AT4G28040.2p  transcript_id AT4G28040.2  
At4g28040	chr4:013940881	0.0	W/13940881-13941059,13941140-13941325,13941408-13941926,13942006-13942201	AT4G28040.3  CDS  gene_syn T13J8.150, T13J8_150  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  product nodulin MtN21 family protein  note nodulin MtN21 family protein; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT4G30420.1); Has 1263 Blast hits to 1256 proteins in 229 species: Archae - 5; Bacteria - 428; Metazoa - 2; Fungi - 0; Plants - 623; Viruses - 0; Other Eukaryotes - 205 (source: NCBI BLink).  protein_id AT4G28040.3p  transcript_id AT4G28040.3  protein_id AT4G28040.3p  transcript_id AT4G28040.3  
At4g28040	chr4:013940881	0.0	W/13940881-13941059,13941140-13941325,13941408-13941926,13942006-13942201	AT4G28040.4  CDS  gene_syn T13J8.150, T13J8_150  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  product nodulin MtN21 family protein  note nodulin MtN21 family protein; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT4G30420.1); Has 1263 Blast hits to 1256 proteins in 229 species: Archae - 5; Bacteria - 428; Metazoa - 2; Fungi - 0; Plants - 623; Viruses - 0; Other Eukaryotes - 205 (source: NCBI BLink).  protein_id AT4G28040.4p  transcript_id AT4G28040.4  protein_id AT4G28040.4p  transcript_id AT4G28040.4  
At4g28040	chr4:013940881	0.0	W/13940881-13941059,13941140-13941325,13941408-13941926,13942006-13942201	AT4G28040.5  CDS  gene_syn T13J8.150, T13J8_150  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  product nodulin MtN21 family protein  note nodulin MtN21 family protein; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT4G30420.1); Has 1263 Blast hits to 1256 proteins in 229 species: Archae - 5; Bacteria - 428; Metazoa - 2; Fungi - 0; Plants - 623; Viruses - 0; Other Eukaryotes - 205 (source: NCBI BLink).  protein_id AT4G28040.5p  transcript_id AT4G28040.5  protein_id AT4G28040.5p  transcript_id AT4G28040.5  
At4g28050	chr4:013943115	0.0	C/13943115-13943621,13942566-13942850	AT4G28050.1  CDS  gene_syn T13J8.160, T13J8_160, TET7, TETRASPANIN7  gene TET7  function Member of TETRASPANIN family  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process aging|GO:0007568||ISS  go_function molecular_function|GO:0003674||ND  product TET7 (TETRASPANIN7)  note TETRASPANIN7 (TET7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499), Tetraspanin, conserved site (InterPro:IPR018503), Tetraspanin, subgroup (InterPro:IPR000301); BEST Arabidopsis thaliana protein match is: TET8 (TETRASPANIN8) (TAIR:AT2G23810.1); Has 364 Blast hits to 364 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 140; Fungi - 0; Plants - 213; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT4G28050.1p  transcript_id AT4G28050.1  protein_id AT4G28050.1p  transcript_id AT4G28050.1  
At4g28060	chr4:013944458	0.0	C/13944458-13944709,13944299-13944405,13944154-13944235,13944018-13944071	AT4G28060.1  CDS  gene_syn T13J8.170, T13J8_170  go_function cytochrome-c oxidase activity|GO:0004129||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739||ISS  go_function cytochrome-c oxidase activity|GO:0004129||ISS  product cytochrome c oxidase subunit 6b, putative  note cytochrome c oxidase subunit 6b, putative; FUNCTIONS IN: cytochrome-c oxidase activity; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase, subunit VIb (InterPro:IPR003213); BEST Arabidopsis thaliana protein match is: cytochrome c oxidase subunit 6b, putative (TAIR:AT5G57815.1); Has 406 Blast hits to 406 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 235; Fungi - 77; Plants - 83; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT4G28060.1p  transcript_id AT4G28060.1  protein_id AT4G28060.1p  transcript_id AT4G28060.1  
At4g28068	chr4:013945738	0.0	W/13945738-13945842	AT4G28068.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G28068.1p  transcript_id AT4G28068.1  protein_id AT4G28068.1p  transcript_id AT4G28068.1  
At4g28070	chr4:013946009	0.0	W/13946009-13946254,13946328-13946551,13946628-13946697,13946789-13946875,13946959-13947024,13947133-13947225,13947327-13947383,13947469-13947597,13947771-13947861,13947950-13948038,13948122-13948315,13948387-13948462	AT4G28070.2  CDS  gene_syn T13J8.180, T13J8_180  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ATPase activity|GO:0016887||ISS  product AFG1-like ATPase family protein  note AFG1-like ATPase family protein; FUNCTIONS IN: ATPase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: ATPase, AFG1-like (InterPro:IPR005654); BEST Arabidopsis thaliana protein match is: AFG1-like ATPase family protein (TAIR:AT4G30490.1); Has 3149 Blast hits to 3139 proteins in 727 species: Archae - 0; Bacteria - 1257; Metazoa - 121; Fungi - 136; Plants - 50; Viruses - 0; Other Eukaryotes - 1585 (source: NCBI BLink).  protein_id AT4G28070.2p  transcript_id AT4G28070.2  protein_id AT4G28070.2p  transcript_id AT4G28070.2  
At4g28070	chr4:013946009	0.0	W/13946009-13946254,13946328-13946551,13946628-13946697,13946789-13946875,13946959-13947024,13947133-13947225,13947327-13947383,13947469-13947597,13947771-13947861,13947977-13948038,13948122-13948315,13948387-13948462	AT4G28070.1  CDS  gene_syn T13J8.180, T13J8_180  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ATPase activity|GO:0016887||ISS  product AFG1-like ATPase family protein  note AFG1-like ATPase family protein; FUNCTIONS IN: ATPase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: ATPase, AFG1-like (InterPro:IPR005654); BEST Arabidopsis thaliana protein match is: AFG1-like ATPase family protein (TAIR:AT4G30490.1); Has 3101 Blast hits to 3091 proteins in 725 species: Archae - 0; Bacteria - 1254; Metazoa - 121; Fungi - 136; Plants - 48; Viruses - 0; Other Eukaryotes - 1542 (source: NCBI BLink).  protein_id AT4G28070.1p  transcript_id AT4G28070.1  protein_id AT4G28070.1p  transcript_id AT4G28070.1  
At4g28080	chr4:013957771	0.0	C/13957771-13957840,13957561-13957622,13957333-13957425,13957086-13957158,13956640-13956993,13956499-13956563,13956294-13956425,13956169-13956210,13955563-13956087,13955326-13955483,13954600-13955107,13954393-13954455,13954213-13954359,13953777-13954085,13953601-13953693,13953409-13953510,13952908-13953012,13952675-13952808,13952409-13952592,13951993-13952124,13951809-13951921,13951050-13951128,13948993-13950954	AT4G28080.1  CDS  gene_syn T13J8.190, T13J8_190  go_function binding|GO:0005488||IEA  product binding  note binding; FUNCTIONS IN: binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT1G01320.1); Has 9596 Blast hits to 3996 proteins in 363 species: Archae - 94; Bacteria - 2123; Metazoa - 5035; Fungi - 1112; Plants - 157; Viruses - 14; Other Eukaryotes - 1061 (source: NCBI BLink).  protein_id AT4G28080.1p  transcript_id AT4G28080.1  protein_id AT4G28080.1p  transcript_id AT4G28080.1  
At4g28085	chr4:013960054	0.0	W/13960054-13960308	AT4G28085.1  CDS  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G28085.1p  transcript_id AT4G28085.1  protein_id AT4G28085.1p  transcript_id AT4G28085.1  
At4g28085	chr4:013960054	0.0	W/13960054-13960308	AT4G28085.2  CDS  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G28085.2p  transcript_id AT4G28085.2  protein_id AT4G28085.2p  transcript_id AT4G28085.2  
At4g28088	chr4:013961471	0.0	C/13961471-13961560,13961244-13961387	AT4G28088.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  product hydrophobic protein, putative / low temperature and salt responsive protein, putative  note hydrophobic protein, putative / low temperature and salt responsive protein, putative; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0057 (InterPro:IPR000612); BEST Arabidopsis thaliana protein match is: hydrophobic protein, putative / low temperature and salt responsive protein, putative (TAIR:AT2G24040.1); Has 677 Blast hits to 677 proteins in 233 species: Archae - 0; Bacteria - 275; Metazoa - 38; Fungi - 169; Plants - 183; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT4G28088.1p  transcript_id AT4G28088.1  protein_id AT4G28088.1p  transcript_id AT4G28088.1  
At4g28090	chr4:013964089	0.0	C/13964089-13964229,13963899-13964008,13963362-13963632,13963164-13963272,13962360-13963074,13962200-13962278,13961888-13962106	AT4G28090.1  CDS  gene_syn SKU5 Similar 10, T13J8.200, T13J8_200, sks10  gene sks10  go_component endomembrane system|GO:0012505||IEA  go_function copper ion binding|GO:0005507||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product sks10 (SKU5 Similar 10); copper ion binding / oxidoreductase  note SKU5 Similar 10 (sks10); FUNCTIONS IN: oxidoreductase activity, copper ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: sks9 (SKU5 Similar 9); copper ion binding / oxidoreductase (TAIR:AT4G38420.1); Has 4009 Blast hits to 3980 proteins in 713 species: Archae - 4; Bacteria - 1087; Metazoa - 275; Fungi - 1665; Plants - 790; Viruses - 0; Other Eukaryotes - 188 (source: NCBI BLink).  protein_id AT4G28090.1p  transcript_id AT4G28090.1  protein_id AT4G28090.1p  transcript_id AT4G28090.1  
At4g28100	chr4:013966104	0.0	C/13966104-13966697,13965300-13965620	AT4G28100.1  CDS  gene_syn T13J8.210, T13J8_210  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18050.1); Has 35 Blast hits to 35 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G28100.1p  transcript_id AT4G28100.1  protein_id AT4G28100.1p  transcript_id AT4G28100.1  
At4g28110	chr4:013969252	0.0	C/13969252-13969384,13969014-13969143,13968166-13968751	AT4G28110.1  CDS  gene_syn AtMYB41, T13J8.220, T13J8_220, myb domain protein 41  gene AtMYB41  function Member of the R2R3 factor gene family. Expression is induced in response to dessication, ABA and salt treatment. Overexpression of Myb41 results in abnormal cuticle development and decreased cell expansion.  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to chitin|GO:0010200|17722694|IEP  go_process cell growth|GO:0016049|17971045|IMP  go_process negative regulation of transcription|GO:0016481|19211694|IMP  go_process cuticle development|GO:0042335|17971045|IMP  go_process regulation of primary metabolic process|GO:0080090|19211694|IMP  go_process regulation of raffinose metabolic process|GO:0080091|19211694|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product AtMYB41 (myb domain protein 41); DNA binding / transcription factor  note myb domain protein 41 (AtMYB41); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 8 processes; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: AtMYB74 (myb domain protein 74); DNA binding / transcription factor (TAIR:AT4G05100.1); Has 6335 Blast hits to 5890 proteins in 369 species: Archae - 0; Bacteria - 0; Metazoa - 655; Fungi - 307; Plants - 3778; Viruses - 4; Other Eukaryotes - 1591 (source: NCBI BLink).  protein_id AT4G28110.1p  transcript_id AT4G28110.1  protein_id AT4G28110.1p  transcript_id AT4G28110.1  
At4g28130	chr4:013971552	0.0	W/13971552-13971779,13972068-13972184,13972270-13972398,13972484-13972569,13972669-13972777,13972858-13972906,13973095-13973177,13973332-13973399,13973545-13973619,13973706-13973793,13973876-13973992,13974072-13974323	AT4G28130.1  CDS  gene_syn AT4G28120, F26K10.10, F26K10_10  go_component chloroplast|GO:0009507|18431481|IDA  go_process activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|GO:0007205||IEA  go_function diacylglycerol kinase activity|GO:0004143||IEA  go_process activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|GO:0007205||ISS  go_function diacylglycerol kinase activity|GO:0004143||ISS  product diacylglycerol kinase accessory domain-containing protein  note diacylglycerol kinase accessory domain-containing protein; FUNCTIONS IN: diacylglycerol kinase activity; INVOLVED IN: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Diacylglycerol kinase, catalytic region (InterPro:IPR001206), Diacylglycerol kinase accessory region (InterPro:IPR000756); BEST Arabidopsis thaliana protein match is: diacylglycerol kinase, putative (TAIR:AT2G20900.4); Has 1125 Blast hits to 968 proteins in 106 species: Archae - 0; Bacteria - 2; Metazoa - 858; Fungi - 0; Plants - 142; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).  protein_id AT4G28130.1p  transcript_id AT4G28130.1  protein_id AT4G28130.1p  transcript_id AT4G28130.1  
At4g28140	chr4:013974905	0.0	C/13974905-13975783	AT4G28140.1  CDS  gene_syn F26K10.20, F26K10_20  function encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to chitin|GO:0010200|17722694|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to chitin, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT2G20880.1); Has 3914 Blast hits to 3741 proteins in 210 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 2; Plants - 3882; Viruses - 2; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT4G28140.1p  transcript_id AT4G28140.1  protein_id AT4G28140.1p  transcript_id AT4G28140.1  
At4g28150	chr4:013978829	0.0	C/13978829-13978912,13978537-13978751,13978272-13978452,13978102-13978187,13977923-13978014,13977642-13977835	AT4G28150.2  CDS  gene_syn F26K10.30, F26K10_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G03420.1); Has 148 Blast hits to 148 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 146; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G28150.2p  transcript_id AT4G28150.2  protein_id AT4G28150.2p  transcript_id AT4G28150.2  
At4g28150	chr4:013978829	0.0	C/13978829-13978912,13978537-13978757,13978272-13978452,13978102-13978187,13977923-13978014,13977642-13977835	AT4G28150.1  CDS  gene_syn F26K10.30, F26K10_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G03420.1); Has 148 Blast hits to 148 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 146; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G28150.1p  transcript_id AT4G28150.1  protein_id AT4G28150.1p  transcript_id AT4G28150.1  
At4g28160	chr4:013980390	0.0	W/13980390-13980725	AT4G28160.1  CDS  gene_syn F26K10.40, F26K10_40  go_component endomembrane system|GO:0012505||IEA  go_process response to gibberellin stimulus|GO:0009739|8155880|ISS  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to gibberellin stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: cell wall protein precursor, putative (TAIR:AT2G20870.1); Has 11 Blast hits to 11 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G28160.1p  transcript_id AT4G28160.1  protein_id AT4G28160.1p  transcript_id AT4G28160.1  
At4g28170	chr4:013981635	0.0	W/13981635-13981961,13982471-13982575	AT4G28170.1  CDS  gene_syn F26K10.50, F26K10_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11120.2); Has 42 Blast hits to 42 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G28170.1p  transcript_id AT4G28170.1  protein_id AT4G28170.1p  transcript_id AT4G28170.1  
At4g28180	chr4:013982911	0.0	C/13982911-13983681	AT4G28180.1  CDS  gene_syn F26K10.60, F26K10_60  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; Has 1384 Blast hits to 1179 proteins in 176 species: Archae - 4; Bacteria - 105; Metazoa - 657; Fungi - 266; Plants - 136; Viruses - 26; Other Eukaryotes - 190 (source: NCBI BLink).  protein_id AT4G28180.1p  transcript_id AT4G28180.1  protein_id AT4G28180.1p  transcript_id AT4G28180.1  
At4g28181	chr4:013983911	0.0	C/13983911-13984021	AT4G28181.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G28181.1p  transcript_id AT4G28181.1  protein_id AT4G28181.1p  transcript_id AT4G28181.1  
At4g28190	chr4:013985753	0.0	W/13985753-13985966,13986468-13986792,13986876-13987050	AT4G28190.1  CDS  gene_syn F26K10.70, F26K10_70, ULT, ULT1, ULTRAPETALA, ULTRAPETALA1  gene ULT1  function Encodes a novel Cys-rich protein with a B-box like domain that acts as a negative regulator of meristem cell accumulation in inflorescence and floral meristems as loss-of-function ult1 mutations cause inflorescence meristem enlargement, the production of extra flowers and floral organs, and a decrease in floral meristem determinacy.  go_function DNA binding|GO:0003677||IEA  go_component nucleus|GO:0005634|15673576|IDA  go_component cytosol|GO:0005829|15673576|IDA  go_process meristem determinacy|GO:0010022|11262233|IMP  go_process regulation of floral meristem growth|GO:0010080|11262233|IMP  go_process regulation of inflorescence meristem growth|GO:0010081|11262233|IMP  go_process floral meristem determinacy|GO:0010582|18441215|IGI  product ULT1 (ULTRAPETALA1); DNA binding  note ULTRAPETALA1 (ULT1); FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of floral meristem growth, meristem determinacy, regulation of inflorescence meristem growth, floral meristem determinacy; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 19 growth stages; CONTAINS InterPro DOMAIN/s: SAND (InterPro:IPR000770); BEST Arabidopsis thaliana protein match is: ULT2 (ULTRAPETALA 2); DNA binding (TAIR:AT2G20825.1); Has 21 Blast hits to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G28190.1p  transcript_id AT4G28190.1  protein_id AT4G28190.1p  transcript_id AT4G28190.1  
At4g28200	chr4:013990030	0.0	C/13990030-13990422,13989255-13989929,13988488-13988928,13988238-13988410,13987980-13988163,13987808-13987888	AT4G28200.1  CDS  gene_syn F26K10.80, F26K10_80  go_component intracellular|GO:0005622||IEA  go_process RNA processing|GO:0006396||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), U3 small nucleolar RNA-associated protein 6 (InterPro:IPR013949); Has 352 Blast hits to 342 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 130; Plants - 24; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).  protein_id AT4G28200.1p  transcript_id AT4G28200.1  protein_id AT4G28200.1p  transcript_id AT4G28200.1  
At4g28210	chr4:013990634	0.0	W/13990634-13990991,13991243-13991931	AT4G28210.1  CDS  gene_syn F26K10.90, F26K10_90, emb1923, embryo defective 1923  gene emb1923  go_component chloroplast|GO:0009507||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product emb1923 (embryo defective 1923)  note embryo defective 1923 (emb1923); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G28210.1p  transcript_id AT4G28210.1  protein_id AT4G28210.1p  transcript_id AT4G28210.1  
At4g28220	chr4:013993078	0.0	W/13993078-13993157,13993423-13993681,13993773-13993979,13994056-13994306,13994399-13994723,13994816-13995079,13995164-13995285,13995370-13995489,13995564-13995651	AT4G28220.1  CDS  gene_syn F26K10.100, F26K10_100, NAD(P)H dehydrogenase B1, NDB1  gene NDB1  go_component extrinsic to mitochondrial inner membrane|GO:0031314|16258072|IDA  go_function NADH dehydrogenase activity|GO:0003954||ISS  go_function disulfide oxidoreductase activity|GO:0015036||ISS  product NDB1 (NAD(P)H dehydrogenase B1); NADH dehydrogenase/ disulfide oxidoreductase  note NAD(P)H dehydrogenase B1 (NDB1); FUNCTIONS IN: disulfide oxidoreductase activity, NADH dehydrogenase activity; LOCATED IN: extrinsic to mitochondrial inner membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), EF-HAND 1 (InterPro:IPR018247), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327), EF-HAND 2 (InterPro:IPR018249), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: NDB3; NADH dehydrogenase (TAIR:AT4G21490.1); Has 7959 Blast hits to 7637 proteins in 1333 species: Archae - 165; Bacteria - 5711; Metazoa - 98; Fungi - 461; Plants - 267; Viruses - 0; Other Eukaryotes - 1257 (source: NCBI BLink).  protein_id AT4G28220.1p  transcript_id AT4G28220.1  protein_id AT4G28220.1p  transcript_id AT4G28220.1  
At4g28230	chr4:013995990	0.0	C/13995990-13997198	AT4G28230.1  CDS  gene_syn F26K10.110, F26K10_110  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; Has 385 Blast hits to 299 proteins in 88 species: Archae - 0; Bacteria - 7; Metazoa - 168; Fungi - 23; Plants - 22; Viruses - 2; Other Eukaryotes - 163 (source: NCBI BLink).  protein_id AT4G28230.1p  transcript_id AT4G28230.1  protein_id AT4G28230.1p  transcript_id AT4G28230.1  
At4g28240	chr4:013997979	0.0	C/13997979-13998239	AT4G28240.1  CDS  gene_syn F26K10.120, F26K10_120  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product wound-responsive protein-related  note wound-responsive protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 8 Blast hits to 8 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G28240.1p  transcript_id AT4G28240.1  protein_id AT4G28240.1p  transcript_id AT4G28240.1  
At4g28250	chr4:014001786	0.0	C/14001786-14001945,14001389-14001689,14000951-14001062,14000446-14000649	AT4G28250.2  CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN B3, ATEXPB3, ATHEXP BETA 1.6, EXPANSIN B3, EXPB3, F26K10.130, F26K10_130  gene ATEXPB3  function putative beta-expansin/allergen protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_process syncytium formation|GO:0006949|16942607|IEP  go_process plant-type cell wall organization|GO:0009664||ISS  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828||ISS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  product ATEXPB3 (ARABIDOPSIS THALIANA EXPANSIN B3)  note ARABIDOPSIS THALIANA EXPANSIN B3 (ATEXPB3); INVOLVED IN: response to cyclopentenone, syncytium formation, plant-type cell wall organization, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: ATEXPB1 (ARABIDOPSIS THALIANA EXPANSIN B1) (TAIR:AT2G20750.1); Has 1398 Blast hits to 1397 proteins in 118 species: Archae - 0; Bacteria - 17; Metazoa - 0; Fungi - 4; Plants - 1358; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT4G28250.2p  transcript_id AT4G28250.2  protein_id AT4G28250.2p  transcript_id AT4G28250.2  
At4g28250	chr4:014001786	0.0	C/14001786-14001945,14001389-14001689,14000951-14001080,14000446-14000649	AT4G28250.1  CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN B3, ATEXPB3, ATHEXP BETA 1.6, EXPANSIN B3, EXPB3, F26K10.130, F26K10_130  gene ATEXPB3  function putative beta-expansin/allergen protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_process syncytium formation|GO:0006949|16942607|IEP  go_process plant-type cell wall organization|GO:0009664||ISS  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828||ISS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  product ATEXPB3 (ARABIDOPSIS THALIANA EXPANSIN B3)  note ARABIDOPSIS THALIANA EXPANSIN B3 (ATEXPB3); INVOLVED IN: response to cyclopentenone, syncytium formation, plant-type cell wall organization, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Barwin-related endoglucanase (InterPro:IPR009009), Rare lipoprotein A (InterPro:IPR005132), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: ATEXPB1 (ARABIDOPSIS THALIANA EXPANSIN B1) (TAIR:AT2G20750.1); Has 1446 Blast hits to 1445 proteins in 129 species: Archae - 0; Bacteria - 21; Metazoa - 0; Fungi - 18; Plants - 1384; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT4G28250.1p  transcript_id AT4G28250.1  protein_id AT4G28250.1p  transcript_id AT4G28250.1  
At4g28260	chr4:014005048	0.0	W/14005048-14006412,14006489-14006620,14006709-14006762	AT4G28260.1  CDS  gene_syn F26K10.140, F26K10_140  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 21 Blast hits to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G28260.1p  transcript_id AT4G28260.1  protein_id AT4G28260.1p  transcript_id AT4G28260.1  
At4g28260	chr4:014005048	0.0	W/14005048-14006412,14006489-14006620,14006709-14006762	AT4G28260.2  CDS  gene_syn F26K10.140, F26K10_140  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 21 Blast hits to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G28260.2p  transcript_id AT4G28260.2  protein_id AT4G28260.2p  transcript_id AT4G28260.2  
At4g28270	chr4:014007614	0.0	C/14007614-14008195	AT4G28270.1  CDS  gene_syn F26K10.150, F26K10_150  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: RMA1; protein binding / ubiquitin-protein ligase/ zinc ion binding (TAIR:AT4G03510.2); Has 1997 Blast hits to 1997 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 1237; Fungi - 227; Plants - 319; Viruses - 9; Other Eukaryotes - 205 (source: NCBI BLink).  protein_id AT4G28270.1p  transcript_id AT4G28270.1  protein_id AT4G28270.1p  transcript_id AT4G28270.1  
At4g28280	chr4:014011083	0.0	W/14011083-14011487	AT4G28280.1  CDS  gene_syn F26K10.160, F26K10_160  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20700.1); Has 71 Blast hits to 71 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G28280.1p  transcript_id AT4G28280.1  protein_id AT4G28280.1p  transcript_id AT4G28280.1  
At4g28290	chr4:014012342	0.0	C/14012342-14012464,14012032-14012151	AT4G28290.1  CDS  gene_syn F26K10.170, F26K10_170  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 20 Blast hits to 20 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G28290.1p  transcript_id AT4G28290.1  protein_id AT4G28290.1p  transcript_id AT4G28290.1  
At4g28300	chr4:014014860	0.0	W/14014860-14015015,14015396-14015683,14015777-14016823	AT4G28300.1  CDS  gene_syn F26K10.180, F26K10_180  function Encodes a protein with 13.6% proline amino acids that is predicted to localize to the cell wall.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1421 (InterPro:IPR010820); BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT5G14540.1); Has 60004 Blast hits to 34360 proteins in 1329 species: Archae - 56; Bacteria - 5557; Metazoa - 26730; Fungi - 11734; Plants - 7276; Viruses - 1271; Other Eukaryotes - 7380 (source: NCBI BLink).  protein_id AT4G28300.1p  transcript_id AT4G28300.1  protein_id AT4G28300.1p  transcript_id AT4G28300.1  
At4g28300	chr4:014015414	0.0	W/14015414-14015683,14015777-14016823	AT4G28300.2  CDS  gene_syn F26K10.180, F26K10_180  function Encodes a protein with 13.6% proline amino acids that is predicted to localize to the cell wall.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1421 (InterPro:IPR010820); BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT5G14540.1); Has 59754 Blast hits to 34212 proteins in 1329 species: Archae - 56; Bacteria - 5564; Metazoa - 26588; Fungi - 11661; Plants - 7254; Viruses - 1262; Other Eukaryotes - 7369 (source: NCBI BLink).  protein_id AT4G28300.2p  transcript_id AT4G28300.2  protein_id AT4G28300.2p  transcript_id AT4G28300.2  
At4g28310	chr4:014017458	0.0	W/14017458-14018066	AT4G28310.1  CDS  gene_syn F26K10.190, F26K10_190  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52270.1); Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G28310.1p  transcript_id AT4G28310.1  protein_id AT4G28310.1p  transcript_id AT4G28310.1  
At4g28320	chr4:014019613	0.0	C/14019613-14019972,14019324-14019521,14019099-14019221,14018797-14019008,14018293-14018695	AT4G28320.1  CDS  gene_syn F26K10.200, F26K10_200  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 5 protein / cellulase family protein  note glycosyl hydrolase family 5 protein / cellulase family protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, family 5, conserved site (InterPro:IPR018087), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 5 protein / cellulase family protein (TAIR:AT2G20680.1); Has 441 Blast hits to 437 proteins in 115 species: Archae - 2; Bacteria - 118; Metazoa - 0; Fungi - 114; Plants - 185; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT4G28320.1p  transcript_id AT4G28320.1  protein_id AT4G28320.1p  transcript_id AT4G28320.1  
At4g28330	chr4:014022452	0.0	C/14022452-14022928	AT4G28330.1  CDS  gene_syn F20O9.10, F20O9_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28340.1); Has 27 Blast hits to 27 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G28330.1p  transcript_id AT4G28330.1  protein_id AT4G28330.1p  transcript_id AT4G28330.1  
At4g28340	chr4:014024630	0.0	C/14024630-14025109	AT4G28340.1  CDS  gene_syn F20O9.20, F20O9_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28330.1); Has 25 Blast hits to 25 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G28340.1p  transcript_id AT4G28340.1  protein_id AT4G28340.1p  transcript_id AT4G28340.1  
At4g28350	chr4:014026577	0.0	W/14026577-14027375,14027421-14027478,14027530-14028622	AT4G28350.1  CDS  gene_syn F20O9.40, F20O9_40  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product lectin protein kinase family protein  note lectin protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: stem, cotyledon, stamen, leaf; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin protein kinase, putative (TAIR:AT4G04960.1); Has 84948 Blast hits to 83941 proteins in 3315 species: Archae - 58; Bacteria - 7702; Metazoa - 36659; Fungi - 6595; Plants - 19375; Viruses - 394; Other Eukaryotes - 14165 (source: NCBI BLink).  protein_id AT4G28350.1p  transcript_id AT4G28350.1  protein_id AT4G28350.1p  transcript_id AT4G28350.1  
At4g28360	chr4:014030800	0.0	C/14030800-14030926,14030605-14030672,14030197-14030349,14029971-14030081,14029739-14029805,14029294-14029583	AT4G28360.1  CDS  gene_syn F20O9.30, F20O9_30  go_component mitochondrion|GO:0005739|15276431|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L22 family  protein  note ribosomal protein L22 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: mitochondrion, ribosome; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein L22/L17 (InterPro:IPR001063), Ribosomal protein L22, bacterial-type (InterPro:IPR005727); BEST Arabidopsis thaliana protein match is: ribosomal protein L22 family protein (TAIR:AT1G52370.3); Has 5503 Blast hits to 5503 proteins in 1687 species: Archae - 0; Bacteria - 3089; Metazoa - 109; Fungi - 48; Plants - 431; Viruses - 0; Other Eukaryotes - 1826 (source: NCBI BLink).  protein_id AT4G28360.1p  transcript_id AT4G28360.1  protein_id AT4G28360.1p  transcript_id AT4G28360.1  
At4g28362	chr4:014032490	0.0	W/14032490-14032561	AT4G28362.1  tRNA  gene_syn 67170.TRNA-LYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Lys (anticodon: TTT)  transcript_id AT4G28362.1  
At4g28365	chr4:014033508	0.0	C/14033508-14033688,14033012-14033430	AT4G28365.1  CDS  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function copper ion binding|GO:0005507||ISS  product plastocyanin-like domain-containing protein  note plastocyanin-like domain-containing protein; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to membrane; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: plastocyanin-like domain-containing protein (TAIR:AT4G32490.1); Has 721 Blast hits to 710 proteins in 49 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 4; Plants - 711; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G28365.1p  transcript_id AT4G28365.1  protein_id AT4G28365.1p  transcript_id AT4G28365.1  
At4g28370	chr4:014035016	0.0	W/14035016-14035153,14035813-14035885,14036014-14036141,14036235-14036350,14036437-14036497,14036601-14036667,14036742-14036819,14036921-14037078,14037172-14037231,14037324-14037417,14037689-14037856,14038319-14038647,14038822-14038938,14039021-14039122	AT4G28370.1  CDS  gene_syn F20O9.50, F20O9_50  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function zinc ion binding|GO:0008270||ISS  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G20650.2); Has 2256 Blast hits to 2229 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 854; Fungi - 199; Plants - 752; Viruses - 4; Other Eukaryotes - 447 (source: NCBI BLink).  protein_id AT4G28370.1p  transcript_id AT4G28370.1  protein_id AT4G28370.1p  transcript_id AT4G28370.1  
At4g28380	chr4:014039756	0.0	C/14039756-14040931	AT4G28380.1  CDS  gene_syn F20O9.70, F20O9_70  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / extensin family protein (TAIR:AT2G15880.1); Has 34610 Blast hits to 11873 proteins in 525 species: Archae - 10; Bacteria - 800; Metazoa - 6115; Fungi - 218; Plants - 25626; Viruses - 0; Other Eukaryotes - 1841 (source: NCBI BLink).  protein_id AT4G28380.1p  transcript_id AT4G28380.1  protein_id AT4G28380.1p  transcript_id AT4G28380.1  
At4g28390	chr4:014042311	0.0	C/14042311-14042781,14041861-14042232,14041486-14041782	AT4G28390.1  CDS  gene_syn AAC3, ADP/ATP CARRIER 3, ATAAC3, F20O9.60, F20O9_60  gene AAC3  function Encodes a mitochondrial ADP/ATP carrier protein. Shown in heterologous systems to be located in the plasma membrane. Has comparable affinity for ADP and ATP (in E.coli).  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_component plastid|GO:0009536|16618929|IDA  go_component membrane|GO:0016020|12084057|IDA  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_process purine nucleotide transport|GO:0015865|12084057|IDA  go_function ATP:ADP antiporter activity|GO:0005471|12084057|IDA  go_function ATP:ADP antiporter activity|GO:0005471||ISS  go_function binding|GO:0005488||ISS  product AAC3 (ADP/ATP CARRIER 3); ATP:ADP antiporter/ binding  note ADP/ATP CARRIER 3 (AAC3); FUNCTIONS IN: binding, ATP:ADP antiporter activity; INVOLVED IN: transport, purine nucleotide transport, mitochondrial transport; LOCATED IN: mitochondrion, mitochondrial inner membrane, plastid, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: AAC2 (ADP/ATP carrier 2); ATP:ADP antiporter/ binding (TAIR:AT5G13490.2); Has 14766 Blast hits to 8935 proteins in 349 species: Archae - 0; Bacteria - 0; Metazoa - 8070; Fungi - 3307; Plants - 2087; Viruses - 0; Other Eukaryotes - 1302 (source: NCBI BLink).  protein_id AT4G28390.1p  transcript_id AT4G28390.1  protein_id AT4G28390.1p  transcript_id AT4G28390.1  
At4g28395	chr4:014043991	0.0	W/14043991-14044320,14044395-14044564,14044686-14044728	AT4G28395.1  CDS  gene_syn ATA7  gene ATA7  function related to lipid transfer proteins  go_component endoplasmic reticulum lumen|GO:0005788|9687065|TAS  go_process pollen sperm cell differentiation|GO:0048235|9687065|TAS  go_function lipid transporter activity|GO:0005319|9687065|ISS  product ATA7; lipid transporter  note ATA7; FUNCTIONS IN: lipid transporter activity; INVOLVED IN: pollen sperm cell differentiation; LOCATED IN: endoplasmic reticulum lumen; EXPRESSED IN: leaf whorl, sepal, flower, seed, microsporangium; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: lipid binding (TAIR:AT5G44265.1); Has 399 Blast hits to 399 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 397; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G28395.1p  transcript_id AT4G28395.1  protein_id AT4G28395.1p  transcript_id AT4G28395.1  
At4g28397	chr4:014046008	0.0	W/14046008-14046187,14046295-14046450	AT4G28397.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ATA7; lipid transporter (TAIR:AT4G28395.1); Has 42 Blast hits to 42 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G28397.1p  transcript_id AT4G28397.1  protein_id AT4G28397.1p  transcript_id AT4G28397.1  
At4g28397	chr4:014046083	0.0	W/14046083-14046187,14046295-14046450	AT4G28397.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G28397.2p  transcript_id AT4G28397.2  protein_id AT4G28397.2p  transcript_id AT4G28397.2  
At4g28400	chr4:014048499	0.0	W/14048499-14048531,14049029-14049277,14049371-14049647,14049728-14049882,14049981-14050118	AT4G28400.1  CDS  gene_syn F20O9.80, F20O9_80  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT2G20630.1); Has 4880 Blast hits to 4872 proteins in 490 species: Archae - 4; Bacteria - 662; Metazoa - 1299; Fungi - 550; Plants - 1326; Viruses - 11; Other Eukaryotes - 1028 (source: NCBI BLink).  protein_id AT4G28400.1p  transcript_id AT4G28400.1  protein_id AT4G28400.1p  transcript_id AT4G28400.1  
At4g28405	chr4:014050579	0.0	C/14050579-14050794	AT4G28405.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Expressed protein  note Expressed protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52415.1); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G28405.1p  transcript_id AT4G28405.1  protein_id AT4G28405.1p  transcript_id AT4G28405.1  
At4g28410	chr4:014052391	0.0	W/14052391-14052740,14053059-14053398,14053471-14053689,14053820-14053879,14053977-14054132,14054541-14054634,14054722-14054846	AT4G28410.1  CDS  gene_syn F20O9.90, F20O9_90  go_process cellular amino acid and derivative metabolic process|GO:0006519||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function catalytic activity|GO:0003824||IEA  go_function transaminase activity|GO:0008483||IEA  go_function transferase activity, transferring nitrogenous groups|GO:0016769||IEA  go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_component cellular_component|GO:0005575||ND  go_function transaminase activity|GO:0008483||ISS  product aminotransferase-related  note aminotransferase-related; FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity; INVOLVED IN: cellular amino acid and derivative metabolic process, biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I and II (InterPro:IPR004839), Tyrosine/nicotianamine aminotransferase (InterPro:IPR005958), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: SUR1 (SUPERROOT 1); S-alkylthiohydroximate lyase/ carbon-sulfur lyase/ transaminase (TAIR:AT2G20610.1); Has 22657 Blast hits to 22653 proteins in 1703 species: Archae - 544; Bacteria - 13426; Metazoa - 656; Fungi - 440; Plants - 849; Viruses - 0; Other Eukaryotes - 6742 (source: NCBI BLink).  protein_id AT4G28410.1p  transcript_id AT4G28410.1  protein_id AT4G28410.1p  transcript_id AT4G28410.1  
At4g28420	chr4:014055687	0.0	W/14055687-14056012,14056127-14056466,14056545-14056763,14056859-14057074,14057161-14057409	AT4G28420.2  CDS  gene_syn F20O9.100, F20O9_100  go_process cellular amino acid and derivative metabolic process|GO:0006519||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function catalytic activity|GO:0003824||IEA  go_function transaminase activity|GO:0008483||IEA  go_function transferase activity, transferring nitrogenous groups|GO:0016769||IEA  go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_component cellular_component|GO:0005575||ND  go_process biosynthetic process|GO:0009058||ISS  go_function transaminase activity|GO:0008483||ISS  product aminotransferase, putative  note aminotransferase, putative; FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate synthase activity, transferase activity, transferring nitrogenous groups, pyridoxal phosphate binding, transaminase activity, catalytic activity; INVOLVED IN: cellular amino acid and derivative metabolic process, biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Tyrosine/nicotianamine aminotransferase (InterPro:IPR005958), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: SUR1 (SUPERROOT 1); S-alkylthiohydroximate lyase/ carbon-sulfur lyase/ transaminase (TAIR:AT2G20610.1); Has 26121 Blast hits to 26117 proteins in 1754 species: Archae - 656; Bacteria - 15811; Metazoa - 648; Fungi - 515; Plants - 893; Viruses - 0; Other Eukaryotes - 7598 (source: NCBI BLink).  protein_id AT4G28420.2p  transcript_id AT4G28420.2  protein_id AT4G28420.2p  transcript_id AT4G28420.2  
At4g28420	chr4:014055687	0.0	W/14055687-14056012,14056127-14056466,14056545-14056763,14056859-14057143	AT4G28420.1  CDS  gene_syn F20O9.100, F20O9_100  go_process cellular amino acid and derivative metabolic process|GO:0006519||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function catalytic activity|GO:0003824||IEA  go_function transaminase activity|GO:0008483||IEA  go_function transferase activity, transferring nitrogenous groups|GO:0016769||IEA  go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_component cellular_component|GO:0005575||ND  go_process biosynthetic process|GO:0009058||ISS  go_function transaminase activity|GO:0008483||ISS  product aminotransferase, putative  note aminotransferase, putative; FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity; INVOLVED IN: cellular amino acid and derivative metabolic process, biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Tyrosine/nicotianamine aminotransferase (InterPro:IPR005958), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: SUR1 (SUPERROOT 1); S-alkylthiohydroximate lyase/ carbon-sulfur lyase/ transaminase (TAIR:AT2G20610.2); Has 25349 Blast hits to 25348 proteins in 1748 species: Archae - 650; Bacteria - 15618; Metazoa - 630; Fungi - 494; Plants - 890; Viruses - 0; Other Eukaryotes - 7067 (source: NCBI BLink).  protein_id AT4G28420.1p  transcript_id AT4G28420.1  protein_id AT4G28420.1p  transcript_id AT4G28420.1  
At4g28430	chr4:014057846	0.0	W/14057846-14058383,14058464-14058617,14058710-14058784,14058868-14059009,14059113-14059182,14059294-14059359,14059444-14059772	AT4G28430.1  CDS  gene_syn F20O9.110, F20O9_110  go_component endoplasmic reticulum|GO:0005783||IEA  go_component chloroplast|GO:0009507||IEA  go_component endoplasmic reticulum|GO:0005783||ISS  go_process biological_process|GO:0008150||ND  product reticulon family protein  note reticulon family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: reticulon family protein (TAIR:AT2G20590.1); Has 363 Blast hits to 363 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 322; Fungi - 2; Plants - 31; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT4G28430.1p  transcript_id AT4G28430.1  protein_id AT4G28430.1p  transcript_id AT4G28430.1  
At4g28440	chr4:014060054	0.0	W/14060054-14060321,14060777-14060970	AT4G28440.1  CDS  gene_syn F20O9.120, F20O9_120  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DNA-binding protein-related  note DNA-binding protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340); BEST Arabidopsis thaliana protein match is: DNA-binding protein-related (TAIR:AT2G33845.1); Has 124 Blast hits to 124 proteins in 29 species: Archae - 14; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT4G28440.1p  transcript_id AT4G28440.1  protein_id AT4G28440.1p  transcript_id AT4G28440.1  
At4g28450	chr4:014064517	0.0	C/14064517-14064582,14064345-14064434,14064145-14064256,14064031-14064058,14063817-14063915,14063667-14063736,14063551-14063585,14063389-14063463,14063207-14063302,14063042-14063105,14062884-14062937,14062695-14062780,14062472-14062597,14062252-14062357,14061993-14062081,14061724-14061886	AT4G28450.1  CDS  gene_syn F20O9.130, F20O9_130  function This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|IPI  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  go_function protein binding|GO:0005515|18223036|IPI  product nucleotide binding / protein binding  note nucleotide binding / protein binding; FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), Sof1-like protein (InterPro:IPR007287); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT4G02730.1); Has 27820 Blast hits to 15810 proteins in 521 species: Archae - 30; Bacteria - 4049; Metazoa - 12474; Fungi - 5079; Plants - 2361; Viruses - 0; Other Eukaryotes - 3827 (source: NCBI BLink).  protein_id AT4G28450.1p  transcript_id AT4G28450.1  protein_id AT4G28450.1p  transcript_id AT4G28450.1  
At4g28460	chr4:014066083	0.0	W/14066083-14066301	AT4G28460.1  CDS  gene_syn F20O9.140, F20O9_140  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G28460.1p  transcript_id AT4G28460.1  protein_id AT4G28460.1p  transcript_id AT4G28460.1  
At4g28470	chr4:014072241	0.0	C/14072241-14072357,14071807-14071907,14071521-14071641,14071369-14071428,14071073-14071183,14070850-14070915,14070589-14070710,14070331-14070445,14070136-14070210,14069884-14070042,14069678-14069785,14069499-14069600,14069267-14069407,14069080-14069184,14068775-14068996,14068566-14068679,14068262-14068477,14068105-14068164,14067895-14068008,14067715-14067800,14067518-14067626,14067258-14067436,14067082-14067154	AT4G28470.1  CDS  gene_syn 26S PROTEASOME REGULATORY SUBUNIT S2 1B, ATRPN1B, F20O9.150, F20O9_150, RPN1B  gene RPN1B  function encoding the RPN subunits of the 26S proteasome  go_function binding|GO:0005488||IEA  go_function enzyme regulator activity|GO:0030234||IEA  go_component proteasome regulatory particle, base subcomplex|GO:0008540|16169895|TAS  go_process protein catabolic process|GO:0030163|16169895|TAS  product RPN1B (26S PROTEASOME REGULATORY SUBUNIT S2 1B); binding / enzyme regulator  note 26S PROTEASOME REGULATORY SUBUNIT S2 1B (RPN1B); FUNCTIONS IN: enzyme regulator activity, binding; INVOLVED IN: protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunit (InterPro:IPR016643), Proteasome/cyclosome, regulatory subunit (InterPro:IPR002015), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A); binding / enzyme regulator (TAIR:AT2G20580.1); Has 726 Blast hits to 687 proteins in 178 species: Archae - 0; Bacteria - 4; Metazoa - 283; Fungi - 202; Plants - 78; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT4G28470.1p  transcript_id AT4G28470.1  protein_id AT4G28470.1p  transcript_id AT4G28470.1  
At4g28480	chr4:014073310	0.0	W/14073310-14073474,14073952-14074237,14074670-14075091	AT4G28480.2  CDS  gene_syn F20O9.160, F20O9_160  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock family protein  note DNAJ heat shock family protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT2G20560.1); Has 21999 Blast hits to 19395 proteins in 2077 species: Archae - 149; Bacteria - 7421; Metazoa - 4039; Fungi - 1909; Plants - 1564; Viruses - 17; Other Eukaryotes - 6900 (source: NCBI BLink).  protein_id AT4G28480.2p  transcript_id AT4G28480.2  protein_id AT4G28480.2p  transcript_id AT4G28480.2  
At4g28480	chr4:014073310	0.0	W/14073310-14073474,14073952-14074397,14074656-14075091	AT4G28480.1  CDS  gene_syn F20O9.160, F20O9_160  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock family protein  note DNAJ heat shock family protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT2G20560.1); Has 19743 Blast hits to 19431 proteins in 2048 species: Archae - 123; Bacteria - 5938; Metazoa - 3886; Fungi - 1733; Plants - 1488; Viruses - 15; Other Eukaryotes - 6560 (source: NCBI BLink).  protein_id AT4G28480.1p  transcript_id AT4G28480.1  protein_id AT4G28480.1p  transcript_id AT4G28480.1  
At4g28485	chr4:014075934	0.0	C/14075934-14076011,14075721-14075833,14075321-14075627	AT4G28485.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF679 (InterPro:IPR007770); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46090.1); Has 142 Blast hits to 139 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 142; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G28485.1p  transcript_id AT4G28485.1  protein_id AT4G28485.1p  transcript_id AT4G28485.1  
At4g28490	chr4:014077894	0.0	W/14077894-14080495,14080568-14080965	AT4G28490.1  CDS  gene_syn F20O9.180, F20O9_180, HAE, HAESA, RECEPTOR-LIKE PROTEIN KINASE 5, RLK5  gene HAE  function member of Receptor kinase-like protein family  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_process protein amino acid autophosphorylation|GO:0046777|18552232|IDA  go_function protein kinase activity|GO:0004672|18552232|IDA  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product HAE (HAESA); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note HAESA (HAE); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid autophosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: HSL1 (HAESA-Like 1); ATP binding / kinase/ protein serine/threonine kinase (TAIR:AT1G28440.1); Has 151449 Blast hits to 100136 proteins in 3430 species: Archae - 85; Bacteria - 12413; Metazoa - 60287; Fungi - 7489; Plants - 51304; Viruses - 378; Other Eukaryotes - 19493 (source: NCBI BLink).  protein_id AT4G28490.1p  transcript_id AT4G28490.1  protein_id AT4G28490.1p  transcript_id AT4G28490.1  
At4g28500	chr4:014083014	0.0	W/14083014-14083163,14083250-14083439,14083689-14084266	AT4G28500.1  CDS  gene_syn ANAC073, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 73, F20O9.190, F20O9_190, SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, SND2  gene ANAC073  go_component nucleus|GO:0005634|18952777|IDA  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|18952777|IDA  product ANAC073 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 73); transcription activator/ transcription factor  note ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 73 (ANAC073); FUNCTIONS IN: transcription factor activity, transcription activator activity; INVOLVED IN: multicellular organismal development, regulation of secondary cell wall thickening; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC010 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 10); transcription activator/ transcription factor (TAIR:AT1G28470.1); Has 1219 Blast hits to 1217 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1218; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G28500.1p  transcript_id AT4G28500.1  protein_id AT4G28500.1p  transcript_id AT4G28500.1  
At4g28510	chr4:014086202	0.0	C/14086202-14086372,14085841-14085957,14085552-14085722,14085251-14085463,14084970-14085164	AT4G28510.1  CDS  gene_syn ATPHB1, F20O9.200, F20O9_200, PROHIBITIN 1  gene ATPHB1  function prohibitin 1 (Atphb1)  go_component mitochondrion|GO:0005739|15276431|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|17883375|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process response to stress|GO:0006950|17883375|IMP  product ATPHB1 (PROHIBITIN 1)  note PROHIBITIN 1 (ATPHB1); INVOLVED IN: response to stress; LOCATED IN: mitochondrion, plasma membrane, respiratory chain complex I; EXPRESSED IN: 10 plant structures; CONTAINS InterPro DOMAIN/s: Prohibitin (InterPro:IPR000163), Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: ATPHB6 (PROHIBITIN 6) (TAIR:AT2G20530.2); Has 2938 Blast hits to 2936 proteins in 755 species: Archae - 126; Bacteria - 1288; Metazoa - 454; Fungi - 201; Plants - 177; Viruses - 11; Other Eukaryotes - 681 (source: NCBI BLink).  protein_id AT4G28510.1p  transcript_id AT4G28510.1  protein_id AT4G28510.1p  transcript_id AT4G28510.1  
At4g28520	chr4:014087596	0.0	W/14087596-14087899,14088025-14088449,14088555-14088677,14088891-14088992,14089210-14089617	AT4G28520.3  CDS  gene_syn CRC, CRU3, CRUCIFERIN 3, CRUCIFERIN C, F20O9.210, F20O9_210  gene CRU3  function Encodes a 12S seed storage protein that is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.  go_component protein body|GO:0042735||TAS  go_process response to abscisic acid stimulus|GO:0009737|18768909|IEP  go_process embryonic development ending in seed dormancy|GO:0009793||TAS  go_function nutrient reservoir activity|GO:0045735||ISS  product CRU3 (CRUCIFERIN 3); nutrient reservoir  note CRUCIFERIN 3 (CRU3); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: embryonic development ending in seed dormancy, response to abscisic acid stimulus; LOCATED IN: protein body; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), 11-S plant seed storage protein (InterPro:IPR006044); BEST Arabidopsis thaliana protein match is: CRA1 (CRUCIFERINA); nutrient reservoir (TAIR:AT5G44120.3); Has 6814 Blast hits to 2547 proteins in 377 species: Archae - 6; Bacteria - 644; Metazoa - 694; Fungi - 261; Plants - 2763; Viruses - 10; Other Eukaryotes - 2436 (source: NCBI BLink).  protein_id AT4G28520.3p  transcript_id AT4G28520.3  protein_id AT4G28520.3p  transcript_id AT4G28520.3  
At4g28520	chr4:014087596	0.0	W/14087596-14087899,14088025-14088449,14088555-14088990,14089210-14089229	AT4G28520.2  CDS  gene_syn CRC, CRU3, CRUCIFERIN 3, CRUCIFERIN C, F20O9.210, F20O9_210  gene CRU3  function Encodes a 12S seed storage protein that is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.  go_component protein body|GO:0042735||TAS  go_process response to abscisic acid stimulus|GO:0009737|18768909|IEP  go_process embryonic development ending in seed dormancy|GO:0009793||TAS  go_function nutrient reservoir activity|GO:0045735||ISS  product CRU3 (CRUCIFERIN 3); nutrient reservoir  note CRUCIFERIN 3 (CRU3); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: embryonic development ending in seed dormancy, response to abscisic acid stimulus; LOCATED IN: protein body; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), 11-S plant seed storage protein (InterPro:IPR006044); BEST Arabidopsis thaliana protein match is: CRA1 (CRUCIFERINA); nutrient reservoir (TAIR:AT5G44120.3); Has 5853 Blast hits to 2518 proteins in 360 species: Archae - 6; Bacteria - 654; Metazoa - 719; Fungi - 283; Plants - 1832; Viruses - 10; Other Eukaryotes - 2349 (source: NCBI BLink).  protein_id AT4G28520.2p  transcript_id AT4G28520.2  protein_id AT4G28520.2p  transcript_id AT4G28520.2  
At4g28520	chr4:014087596	0.0	W/14087596-14087899,14088025-14088449,14088555-14088992,14089210-14089617	AT4G28520.1  CDS  gene_syn CRC, CRU3, CRUCIFERIN 3, CRUCIFERIN C, F20O9.210, F20O9_210  gene CRU3  function Encodes a 12S seed storage protein that is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.  go_component protein body|GO:0042735||TAS  go_process response to abscisic acid stimulus|GO:0009737|18768909|IEP  go_process embryonic development ending in seed dormancy|GO:0009793||TAS  go_function nutrient reservoir activity|GO:0045735||ISS  product CRU3 (CRUCIFERIN 3); nutrient reservoir  note CRUCIFERIN 3 (CRU3); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: embryonic development ending in seed dormancy, response to abscisic acid stimulus; LOCATED IN: protein body; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), 11-S plant seed storage protein (InterPro:IPR006044); BEST Arabidopsis thaliana protein match is: CRA1 (CRUCIFERINA); nutrient reservoir (TAIR:AT5G44120.3); Has 6000 Blast hits to 2640 proteins in 380 species: Archae - 6; Bacteria - 657; Metazoa - 716; Fungi - 272; Plants - 1988; Viruses - 10; Other Eukaryotes - 2351 (source: NCBI BLink).  protein_id AT4G28520.1p  transcript_id AT4G28520.1  protein_id AT4G28520.1p  transcript_id AT4G28520.1  
At4g28520	chr4:014087596	0.0	W/14087596-14087899,14088025-14088449,14088555-14088996,14089210-14089229	AT4G28520.4  CDS  gene_syn CRC, CRU3, CRUCIFERIN 3, CRUCIFERIN C, F20O9.210, F20O9_210  gene CRU3  function Encodes a 12S seed storage protein that is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.  go_component protein body|GO:0042735||TAS  go_process response to abscisic acid stimulus|GO:0009737|18768909|IEP  go_process embryonic development ending in seed dormancy|GO:0009793||TAS  go_function nutrient reservoir activity|GO:0045735||ISS  product CRU3 (CRUCIFERIN 3); nutrient reservoir  note CRUCIFERIN 3 (CRU3); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: embryonic development ending in seed dormancy, response to abscisic acid stimulus; LOCATED IN: protein body; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), 11-S plant seed storage protein (InterPro:IPR006044); BEST Arabidopsis thaliana protein match is: CRA1 (CRUCIFERINA); nutrient reservoir (TAIR:AT5G44120.3); Has 5884 Blast hits to 2529 proteins in 359 species: Archae - 6; Bacteria - 662; Metazoa - 717; Fungi - 286; Plants - 1847; Viruses - 10; Other Eukaryotes - 2356 (source: NCBI BLink).  protein_id AT4G28520.4p  transcript_id AT4G28520.4  protein_id AT4G28520.4p  transcript_id AT4G28520.4  
At4g28530	chr4:014094387	0.0	C/14094387-14094603,14092333-14092598,14090725-14091300	AT4G28530.1  CDS  gene_syn Arabidopsis NAC domain containing protein 74, F20O9.220, F20O9_220, anac074  gene anac074  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac074 (Arabidopsis NAC domain containing protein 74); transcription factor  note Arabidopsis NAC domain containing protein 74 (anac074); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC1; transcription factor (TAIR:AT1G56010.2); Has 1549 Blast hits to 1547 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1549; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G28530.1p  transcript_id AT4G28530.1  protein_id AT4G28530.1p  transcript_id AT4G28530.1  
At4g28530	chr4:014094387	0.0	C/14094387-14094603,14092444-14092598,14090725-14091300	AT4G28530.2  CDS  gene_syn Arabidopsis NAC domain containing protein 74, F20O9.220, F20O9_220, anac074  gene anac074  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac074 (Arabidopsis NAC domain containing protein 74); transcription factor  note Arabidopsis NAC domain containing protein 74 (anac074); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: CUC2 (CUP-SHAPED COTYLEDON 2); transcription factor (TAIR:AT5G53950.1); Has 1264 Blast hits to 1262 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1264; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G28530.2p  transcript_id AT4G28530.2  protein_id AT4G28530.2p  transcript_id AT4G28530.2  
At4g28540	chr4:014107284	0.0	W/14107284-14107371,14107503-14107543,14107798-14107867,14108026-14108174,14108270-14108365,14108604-14108674,14108769-14108830,14108921-14108984,14109070-14109154,14109255-14109381,14109604-14109689,14109771-14109834,14109932-14110065,14110209-14110511	AT4G28540.1  CDS  gene_syn CASEIN KINASE I-LIKE 6, CKL6, F20O9.240, F20O9_240, PAPK1  gene CKL6  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component plasmodesma|GO:0009506|16126836|TAS  go_function protein serine/threonine kinase activity|GO:0004674|16126836|IDA  go_function kinase activity|GO:0016301||ISS  product CKL6 (CASEIN KINASE I-LIKE 6); kinase/ protein serine/threonine kinase  note CASEIN KINASE I-LIKE 6 (CKL6); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasmodesma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ADK1 (dual specificity kinase 1); kinase/ protein serine/threonine/tyrosine kinase (TAIR:AT1G03930.1); Has 46100 Blast hits to 45721 proteins in 1424 species: Archae - 12; Bacteria - 5612; Metazoa - 19980; Fungi - 4668; Plants - 5911; Viruses - 338; Other Eukaryotes - 9579 (source: NCBI BLink).  protein_id AT4G28540.1p  transcript_id AT4G28540.1  protein_id AT4G28540.1p  transcript_id AT4G28540.1  
At4g28550	chr4:014111204	0.0	W/14111204-14111314,14111400-14111495,14111567-14111670,14111755-14111954,14112071-14112193,14112278-14112366,14112452-14112557,14112654-14112751,14112945-14113190,14113290-14113373,14113451-14113468	AT4G28550.1  CDS  gene_syn F20O9.250, F20O9_250  go_component intracellular|GO:0005622||IEA  go_process regulation of Rab GTPase activity|GO:0032313||IEA  go_function RAB GTPase activator activity|GO:0005097||IEA  product RabGAP/TBC domain-containing protein  note RabGAP/TBC domain-containing protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: sperm cell, flower, root; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: RabGAP/TBC domain-containing protein (TAIR:AT2G20440.2); Has 3355 Blast hits to 3268 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 2017; Fungi - 524; Plants - 331; Viruses - 0; Other Eukaryotes - 483 (source: NCBI BLink).  protein_id AT4G28550.1p  transcript_id AT4G28550.1  protein_id AT4G28550.1p  transcript_id AT4G28550.1  
At4g28556	chr4:014114754	0.0	W/14114754-14114826,14115132-14115244,14115331-14115795	AT4G28556.1  CDS  gene_syn RIC7  gene RIC7  function Encodes RIC7, the downstream effector of active Rop2 GTPase.  go_component nucleus|GO:0005634|18178769|IDA  go_component plasma membrane|GO:0005886|18178769|IDA  go_process response to light stimulus|GO:0009416|18178769|IDA  go_function molecular_function|GO:0003674||ND  product RIC7  note RIC7; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to light stimulus; LOCATED IN: plasma membrane, nucleus; EXPRESSED IN: mesophyll cell, guard cell; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095); BEST Arabidopsis thaliana protein match is: RIC6 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 6) (TAIR:AT2G20430.1); Has 3057 Blast hits to 1035 proteins in 148 species: Archae - 0; Bacteria - 54; Metazoa - 1507; Fungi - 224; Plants - 133; Viruses - 12; Other Eukaryotes - 1127 (source: NCBI BLink).  protein_id AT4G28556.1p  transcript_id AT4G28556.1  protein_id AT4G28556.1p  transcript_id AT4G28556.1  
At4g28560	chr4:014116015	0.0	C/14116015-14117367	AT4G28560.1  CDS  gene_syn RIC7, ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 7  gene RIC7  function encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Most similar to RIC6 and RIC8 (subfamily group II). Gene is expressed in all tissues examined.  go_component apical plasma membrane|GO:0016324|11752391|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process signal transduction|GO:0007165|11751054|IC  go_process pollen tube growth|GO:0009860|11752391|IMP  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515|11752391|IDA  go_function protein binding|GO:0005515||ISS  product RIC7 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 7); protein binding  note ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 7 (RIC7); FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction, pollen tube growth; LOCATED IN: apical plasma membrane, anchored to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT1G13230.1); Has 42423 Blast hits to 14701 proteins in 644 species: Archae - 22; Bacteria - 2145; Metazoa - 8238; Fungi - 301; Plants - 29446; Viruses - 0; Other Eukaryotes - 2271 (source: NCBI BLink).  protein_id AT4G28560.1p  transcript_id AT4G28560.1  protein_id AT4G28560.1p  transcript_id AT4G28560.1  
At4g28564	chr4:014118315	0.0	C/14118315-14118416	AT4G28564.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G28564.1p  transcript_id AT4G28564.1  protein_id AT4G28564.1p  transcript_id AT4G28564.1  
At4g28570	chr4:014119548	0.0	W/14119548-14119757,14119887-14121923	AT4G28570.1  CDS  gene_syn T5F17.20, T5F17_20  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on CH-OH group of donors|GO:0016614||IEA  go_function FAD binding|GO:0050660||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_function electron carrier activity|GO:0009055||ISS  product alcohol oxidase-related  note alcohol oxidase-related; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal (InterPro:IPR003953), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867), Long-chain fatty alcohol dehydrogenase (InterPro:IPR012400); BEST Arabidopsis thaliana protein match is: alcohol oxidase-related (TAIR:AT1G03990.1); Has 2662 Blast hits to 2459 proteins in 518 species: Archae - 37; Bacteria - 1548; Metazoa - 43; Fungi - 179; Plants - 79; Viruses - 0; Other Eukaryotes - 776 (source: NCBI BLink).  protein_id AT4G28570.1p  transcript_id AT4G28570.1  protein_id AT4G28570.1p  transcript_id AT4G28570.1  
At4g28580	chr4:014123489	0.0	W/14123489-14123777,14123857-14124263,14124345-14124599,14124728-14125003	AT4G28580.1  CDS  gene_syn T5F17.30, T5F17_30  go_component membrane|GO:0016020||IEA  go_process metal ion transport|GO:0030001||IEA  go_function metal ion transmembrane transporter activity|GO:0046873||IEA  go_component membrane|GO:0016020||ISS  go_process metal ion transport|GO:0030001||ISS  go_function metal ion transmembrane transporter activity|GO:0046873||ISS  product magnesium transporter CorA-like family protein (MRS2-6)  note magnesium transporter CorA-like family protein (MRS2-6); FUNCTIONS IN: metal ion transmembrane transporter activity; INVOLVED IN: metal ion transport; LOCATED IN: membrane; EXPRESSED IN: sperm cell, leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Mg2+ transporter protein, CorA-like (InterPro:IPR002523); BEST Arabidopsis thaliana protein match is: magnesium transporter CorA-like family protein (TAIR:AT3G58970.1); Has 492 Blast hits to 491 proteins in 126 species: Archae - 0; Bacteria - 39; Metazoa - 55; Fungi - 134; Plants - 191; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT4G28580.1p  transcript_id AT4G28580.1  protein_id AT4G28580.1p  transcript_id AT4G28580.1  
At4g28590	chr4:014126134	0.0	C/14126134-14126828,14125804-14125888,14125560-14125671,14125367-14125470	AT4G28590.1  CDS  gene_syn T5F17.40, T5F17_40  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31840.1); Has 81 Blast hits to 81 proteins in 33 species: Archae - 2; Bacteria - 0; Metazoa - 16; Fungi - 6; Plants - 38; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT4G28590.1p  transcript_id AT4G28590.1  protein_id AT4G28590.1p  transcript_id AT4G28590.1  
At4g28600	chr4:014130046	0.0	W/14130046-14130315,14130385-14130652,14130732-14131936,14132020-14132173,14132277-14132599	AT4G28600.1  CDS  gene_syn NPGR2, T5F17.50, T5F17_50, no pollen germination related 2  gene NPGR2  function encodes a calmodulin-binding protein that is expressed in pollen, suspension culture cells, flowers, and fruits.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function calmodulin binding|GO:0005516|12928497|TAS  product NPGR2 (no pollen germination related 2); calmodulin binding  note no pollen germination related 2 (NPGR2); FUNCTIONS IN: calmodulin binding; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: NPG1 (no pollen germination 1); calmodulin binding (TAIR:AT2G43040.1); Has 1553 Blast hits to 1318 proteins in 253 species: Archae - 190; Bacteria - 378; Metazoa - 238; Fungi - 56; Plants - 128; Viruses - 0; Other Eukaryotes - 563 (source: NCBI BLink).  protein_id AT4G28600.1p  transcript_id AT4G28600.1  protein_id AT4G28600.1p  transcript_id AT4G28600.1  
At4g28610	chr4:014134394	0.0	C/14134394-14134951,14134114-14134303,14133954-14134030,14133842-14133884,14133698-14133755,14133541-14133610,14133164-14133397	AT4G28610.1  CDS  gene_syn AtPHR1, PHOSPHATE STARVATION RESPONSE 1, PHR1, T5F17.60, T5F17_60  gene PHR1  function Similar to phosphate starvation response gene from Chlamydomonas. Weakly responsive to phosphate starvation. Acts upstream of PHO2 in phosphate signaling.  go_component nucleus|GO:0005634|11511543|IDA  go_process cellular response to phosphate starvation|GO:0016036|16679424|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product PHR1 (PHOSPHATE STARVATION RESPONSE 1); transcription factor  note PHOSPHATE STARVATION RESPONSE 1 (PHR1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: cellular response to phosphate starvation, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT2G20400.1); Has 926 Blast hits to 916 proteins in 43 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 2; Plants - 908; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT4G28610.1p  transcript_id AT4G28610.1  protein_id AT4G28610.1p  transcript_id AT4G28610.1  
At4g28620	chr4:014136388	0.0	C/14136388-14137953,14135526-14136002	AT4G28620.1  CDS  gene_syn ABC TRANSPORTER OF THE MITOCHONDRION 2, ARABIDOPSIS THALIANA ABC TRANSPORTER OF THE MITOCHONDRION 2, ATATM2, ATM2, HALF-MOLECULE ABC TRANSPORTER ATM2, T5F17.70, T5F17_70  gene ATM2  function half-molecule ABC transporter ATM2  go_process transport|GO:0006810||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ATM2 (ABC TRANSPORTER OF THE MITOCHONDRION 2); ATPase, coupled to transmembrane movement of substances / transporter  note ABC TRANSPORTER OF THE MITOCHONDRION 2 (ATM2); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: transport; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATM1 (ABC TRANSPORTER OF THE MITOCHONDRION); ATPase, coupled to transmembrane movement of substances / transporter (TAIR:AT4G28630.1); Has 249098 Blast hits to 224917 proteins in 2649 species: Archae - 4221; Bacteria - 166304; Metazoa - 8345; Fungi - 4930; Plants - 2664; Viruses - 16; Other Eukaryotes - 62618 (source: NCBI BLink).  protein_id AT4G28620.1p  transcript_id AT4G28620.1  protein_id AT4G28620.1p  transcript_id AT4G28620.1  
At4g28630	chr4:014139336	0.0	C/14139336-14140895,14138535-14139011	AT4G28630.1  CDS  gene_syn ABC TRANSPORTER OF THE MITOCHONDRION, ATATM1, ATM1, HALF-MOLECULE ABC TRANSPORTER ATM1, T5F17.80, T5F17_80  gene ATM1  function half-molecule ABC transporter ATM1  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ATM1 (ABC TRANSPORTER OF THE MITOCHONDRION); ATPase, coupled to transmembrane movement of substances / transporter  note ABC TRANSPORTER OF THE MITOCHONDRION (ATM1); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: transport; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATM2 (ABC TRANSPORTER OF THE MITOCHONDRION 2); ATPase, coupled to transmembrane movement of substances / transporter (TAIR:AT4G28620.1); Has 246918 Blast hits to 223265 proteins in 2642 species: Archae - 4145; Bacteria - 165412; Metazoa - 8502; Fungi - 4789; Plants - 2646; Viruses - 14; Other Eukaryotes - 61410 (source: NCBI BLink).  protein_id AT4G28630.1p  transcript_id AT4G28630.1  protein_id AT4G28630.1p  transcript_id AT4G28630.1  
At4g28640	chr4:014142288	0.0	W/14142288-14142547,14143002-14143270,14143363-14143495,14143587-14143648,14143739-14143755	AT4G28640.1  CDS  gene_syn IAA11, INDOLE-3-ACETIC ACID INDUCIBLE 11, T5F17.90, T5F17_90  gene IAA11  function Auxin induced gene, IAA11 (IAA11).  go_component nucleus|GO:0005634||IEA  go_process response to auxin stimulus|GO:0009733|12036262|TAS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  product IAA11 (INDOLE-3-ACETIC ACID INDUCIBLE 11); transcription factor  note INDOLE-3-ACETIC ACID INDUCIBLE 11 (IAA11); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to cyclopentenone, response to auxin stimulus; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA13; transcription factor (TAIR:AT2G33310.2); Has 1195 Blast hits to 1195 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1195; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G28640.1p  transcript_id AT4G28640.1  protein_id AT4G28640.1p  transcript_id AT4G28640.1  
At4g28640	chr4:014142288	0.0	W/14142288-14142547,14143002-14143270,14143363-14143495,14143587-14143648,14143744-14143928	AT4G28640.2  CDS  gene_syn IAA11, INDOLE-3-ACETIC ACID INDUCIBLE 11, T5F17.90, T5F17_90  gene IAA11  function Auxin induced gene, IAA11 (IAA11).  go_component nucleus|GO:0005634||IEA  go_process response to auxin stimulus|GO:0009733|12036262|TAS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  product IAA11 (INDOLE-3-ACETIC ACID INDUCIBLE 11); transcription factor  note INDOLE-3-ACETIC ACID INDUCIBLE 11 (IAA11); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to cyclopentenone, response to auxin stimulus; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA13; transcription factor (TAIR:AT2G33310.2); Has 1194 Blast hits to 1194 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1194; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G28640.2p  transcript_id AT4G28640.2  protein_id AT4G28640.2p  transcript_id AT4G28640.2  
At4g28650	chr4:014144651	0.0	C/14144651-14147276,14144155-14144570	AT4G28650.1  CDS  gene_syn T5F17.100, T5F17_100  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, guard cell, root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CLAVATA1 receptor kinase (CLV1) (TAIR:AT1G08590.1); Has 163631 Blast hits to 102654 proteins in 2986 species: Archae - 80; Bacteria - 12725; Metazoa - 66210; Fungi - 7697; Plants - 55032; Viruses - 404; Other Eukaryotes - 21483 (source: NCBI BLink).  protein_id AT4G28650.1p  transcript_id AT4G28650.1  protein_id AT4G28650.1p  transcript_id AT4G28650.1  
At4g28660	chr4:014150008	0.0	W/14150008-14150077,14150452-14150933	AT4G28660.1  CDS  gene_syn PHOTOSYSTEM II REACTION CENTER PSB28 PROTEIN, PSB28, T5F17.110, T5F17_110  gene PSB28  function Similar to PsbW subunit of photosystem II.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_process photosynthesis|GO:0015979||IEA  go_component photosystem II reaction center|GO:0009539||ISS  go_process photosynthesis|GO:0015979||ISS  go_function molecular_function|GO:0003674||ND  product PSB28 (PHOTOSYSTEM II REACTION CENTER PSB28 PROTEIN)  note PHOTOSYSTEM II REACTION CENTER PSB28 PROTEIN (PSB28); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthesis; LOCATED IN: thylakoid, chloroplast thylakoid membrane, photosystem II reaction center, chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II protein Psb28, class 1 (InterPro:IPR005610); Has 325 Blast hits to 325 proteins in 84 species: Archae - 0; Bacteria - 156; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink).  protein_id AT4G28660.1p  transcript_id AT4G28660.1  protein_id AT4G28660.1p  transcript_id AT4G28660.1  
At4g28670	chr4:014151387	0.0	W/14151387-14151809,14152005-14152320,14152420-14152545,14152580-14152755,14152841-14153051,14153138-14153384,14153467-14153617,14153708-14153935	AT4G28670.1  CDS  gene_syn T5F17.120, T5F17_120  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G70520.1); Has 84496 Blast hits to 83439 proteins in 3160 species: Archae - 44; Bacteria - 6782; Metazoa - 37390; Fungi - 6639; Plants - 18853; Viruses - 490; Other Eukaryotes - 14298 (source: NCBI BLink).  protein_id AT4G28670.1p  transcript_id AT4G28670.1  protein_id AT4G28670.1p  transcript_id AT4G28670.1  
At4g28680	chr4:014155248	0.0	W/14155248-14155538,14155655-14155727,14155844-14156074,14156361-14156524,14156596-14156736,14156860-14156919,14157150-14157314,14157418-14157474,14157729-14157793,14157878-14158001,14158155-14158292,14158418-14158546	AT4G28680.1  CDS  gene_syn T5F17.130, T5F17_130  go_process cellular amino acid and derivative metabolic process|GO:0006519||IEA  go_process carboxylic acid metabolic process|GO:0019752||IEA  go_function catalytic activity|GO:0003824||IEA  go_function carboxy-lyase activity|GO:0016831||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_process amino acid metabolic process|GO:0006520||ISS  go_function tyrosine decarboxylase activity|GO:0004837||ISS  product tyrosine decarboxylase, putative  note tyrosine decarboxylase, putative; FUNCTIONS IN: pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity, tyrosine decarboxylase activity; INVOLVED IN: amino acid metabolic process, carboxylic acid metabolic process, cellular amino acid and derivative metabolic process; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Aromatic-L-amino-acid decarboxylase (InterPro:IPR010977), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: tyrosine decarboxylase, putative (TAIR:AT2G20340.1); Has 6638 Blast hits to 4682 proteins in 1317 species: Archae - 99; Bacteria - 1643; Metazoa - 2103; Fungi - 655; Plants - 215; Viruses - 8; Other Eukaryotes - 1915 (source: NCBI BLink).  protein_id AT4G28680.1p  transcript_id AT4G28680.1  protein_id AT4G28680.1p  transcript_id AT4G28680.1  
At4g28680	chr4:014155248	0.0	W/14155248-14155538,14155655-14155727,14155844-14156074,14156361-14156524,14156596-14156736,14156860-14156919,14157150-14157314,14157418-14157480,14157729-14157793,14157878-14158001,14158155-14158292,14158418-14158546	AT4G28680.2  CDS  gene_syn T5F17.130, T5F17_130  go_process cellular amino acid and derivative metabolic process|GO:0006519||IEA  go_process carboxylic acid metabolic process|GO:0019752||IEA  go_function catalytic activity|GO:0003824||IEA  go_function carboxy-lyase activity|GO:0016831||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_process amino acid metabolic process|GO:0006520||ISS  go_function tyrosine decarboxylase activity|GO:0004837||ISS  product tyrosine decarboxylase, putative  note tyrosine decarboxylase, putative; FUNCTIONS IN: pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity, tyrosine decarboxylase activity; INVOLVED IN: amino acid metabolic process, carboxylic acid metabolic process, cellular amino acid and derivative metabolic process; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Aromatic-L-amino-acid decarboxylase (InterPro:IPR010977), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: tyrosine decarboxylase, putative (TAIR:AT2G20340.1); Has 6586 Blast hits to 4645 proteins in 1319 species: Archae - 101; Bacteria - 1624; Metazoa - 2075; Fungi - 658; Plants - 209; Viruses - 8; Other Eukaryotes - 1911 (source: NCBI BLink).  protein_id AT4G28680.2p  transcript_id AT4G28680.2  protein_id AT4G28680.2p  transcript_id AT4G28680.2  
At4g28690	chr4:014159093	0.0	W/14159093-14159359,14159679-14159765,14159884-14160876	AT4G28690.1  CDS  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: RIN13 (RPM1 INTERACTING PROTEIN 13) (TAIR:AT2G20310.1); Has 370 Blast hits to 352 proteins in 105 species: Archae - 0; Bacteria - 10; Metazoa - 143; Fungi - 82; Plants - 80; Viruses - 3; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT4G28690.1p  transcript_id AT4G28690.1  protein_id AT4G28690.1p  transcript_id AT4G28690.1  
At4g28700	chr4:014161681	0.0	W/14161681-14163195	AT4G28700.1  CDS  gene_syn AMMONIUM TRANSPORTER 1;4, AMT1;4, F16A16.190, F16A16_190  gene AMT1;4  go_process transport|GO:0006810||IEA  go_component plasma membrane|GO:0005886|19073648|IDA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_function ammonium transmembrane transporter activity|GO:0008519||ISS  go_function high affinity secondary active ammonium transmembrane transporter activity|GO:0015398|19073648|IMP  product AMT1;4 (AMMONIUM TRANSPORTER 1;4); ammonium transmembrane transporter/ high affinity secondary active ammonium transmembrane transporter  note AMMONIUM TRANSPORTER 1;4 (AMT1;4); FUNCTIONS IN: high affinity secondary active ammonium transmembrane transporter activity, ammonium transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: leaf whorl, male gametophyte, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ammonium transporter (InterPro:IPR001905), Ammonium transporter, conserved site (InterPro:IPR018047), Rh-like protein/ammonium transporter (InterPro:IPR010256); BEST Arabidopsis thaliana protein match is: AMT1;1 (AMMONIUM TRANSPORTER 1;1); ammonium transmembrane transporter (TAIR:AT4G13510.1); Has 8745 Blast hits to 8740 proteins in 1163 species: Archae - 146; Bacteria - 2592; Metazoa - 303; Fungi - 303; Plants - 280; Viruses - 0; Other Eukaryotes - 5121 (source: NCBI BLink).  protein_id AT4G28700.1p  transcript_id AT4G28700.1  protein_id AT4G28700.1p  transcript_id AT4G28700.1  
At4g28703	chr4:014166365	0.0	W/14166365-14166450,14166561-14166798	AT4G28703.1  CDS  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Protein of unknown function DUF861, cupin-3 (InterPro:IPR008579), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04300.1); Has 311 Blast hits to 311 proteins in 80 species: Archae - 0; Bacteria - 147; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT4G28703.1p  transcript_id AT4G28703.1  protein_id AT4G28703.1p  transcript_id AT4G28703.1  
At4g28706	chr4:014167805	0.0	W/14167805-14167887,14167969-14168038,14168116-14168205,14168286-14168363,14168464-14168538,14168655-14168707,14168911-14169061,14169332-14169442,14169537-14169663,14169762-14169862,14169944-14170082,14170178-14170230,14170536-14170619	AT4G28706.2  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process D-ribose metabolic process|GO:0006014||IEA  go_function ribokinase activity|GO:0004747||IEA  go_function kinase activity|GO:0016301||ISS  product pfkB-type carbohydrate kinase family protein  note pfkB-type carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-type carbohydrate kinase family protein (TAIR:AT5G43910.2); Has 4387 Blast hits to 4219 proteins in 946 species: Archae - 120; Bacteria - 2863; Metazoa - 287; Fungi - 77; Plants - 163; Viruses - 0; Other Eukaryotes - 877 (source: NCBI BLink).  protein_id AT4G28706.2p  transcript_id AT4G28706.2  protein_id AT4G28706.2p  transcript_id AT4G28706.2  
At4g28706	chr4:014167805	0.0	W/14167805-14167887,14167969-14168038,14168116-14168205,14168286-14168363,14168464-14168538,14168655-14168707,14168911-14169061,14169332-14169442,14169537-14169663,14169765-14169862,14169944-14170082,14170178-14170230,14170536-14170619	AT4G28706.3  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process D-ribose metabolic process|GO:0006014||IEA  go_function ribokinase activity|GO:0004747||IEA  go_function kinase activity|GO:0016301||ISS  product pfkB-type carbohydrate kinase family protein  note pfkB-type carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-type carbohydrate kinase family protein (TAIR:AT5G43910.2); Has 4369 Blast hits to 4279 proteins in 956 species: Archae - 120; Bacteria - 2818; Metazoa - 278; Fungi - 82; Plants - 158; Viruses - 0; Other Eukaryotes - 913 (source: NCBI BLink).  protein_id AT4G28706.3p  transcript_id AT4G28706.3  protein_id AT4G28706.3p  transcript_id AT4G28706.3  
At4g28706	chr4:014167805	0.0	W/14167805-14167887,14167975-14168038,14168116-14168205,14168286-14168363,14168464-14168538,14168655-14168707,14168911-14169061,14169332-14169442,14169537-14169663,14169765-14169862,14169944-14170082,14170178-14170230,14170536-14170619	AT4G28706.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process D-ribose metabolic process|GO:0006014||IEA  go_function ribokinase activity|GO:0004747||IEA  go_function kinase activity|GO:0016301||ISS  product pfkB-type carbohydrate kinase family protein  note pfkB-type carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-type carbohydrate kinase family protein (TAIR:AT5G43910.2); Has 4369 Blast hits to 4279 proteins in 956 species: Archae - 120; Bacteria - 2818; Metazoa - 278; Fungi - 82; Plants - 158; Viruses - 0; Other Eukaryotes - 913 (source: NCBI BLink).  protein_id AT4G28706.1p  transcript_id AT4G28706.1  protein_id AT4G28706.1p  transcript_id AT4G28706.1  
At4g28710	chr4:014172280	0.0	W/14172280-14172282,14172938-14173063,14173199-14173342,14173480-14173625,14173722-14173878,14173977-14174035,14174159-14174318,14174608-14174757,14174841-14174977,14175079-14175225,14175333-14175434,14175719-14175776,14175865-14175966,14176047-14176084,14176172-14176298,14176402-14176572,14176655-14176786,14176874-14176983,14177063-14177144,14177258-14177435,14177522-14177727,14177875-14177994,14178291-14178389,14178510-14178722,14178842-14178981,14179076-14179175,14179250-14179294,14179378-14179461,14179559-14179729,14179863-14180006,14180096-14180296,14180402-14180539,14180613-14180683,14180765-14180864,14180961-14181017,14181146-14181202,14181303-14181383,14181476-14181558,14181660-14181771	AT4G28710.1  CDS  gene_syn ATXIH, F16A16.180, F16A16_180, MYOSIN XI H, XIH  gene XIH  function member of Myosin-like proteins  go_component myosin complex|GO:0016459||IEA  go_process actin filament-based movement|GO:0030048|11516337|TAS  go_function motor activity|GO:0003774|11516337|ISS  product XIH; motor  note XIH; FUNCTIONS IN: motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: myosin complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor region (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: MYA2 (ARABIDOPSIS MYOSIN 2); GTP-dependent protein binding / Rab GTPase binding / motor (TAIR:AT5G43900.1); Has 22834 Blast hits to 15456 proteins in 973 species: Archae - 178; Bacteria - 1212; Metazoa - 13845; Fungi - 1373; Plants - 801; Viruses - 69; Other Eukaryotes - 5356 (source: NCBI BLink).  protein_id AT4G28710.1p  transcript_id AT4G28710.1  protein_id AT4G28710.1p  transcript_id AT4G28710.1  
At4g28720	chr4:014192688	0.0	W/14192688-14193968	AT4G28720.1  CDS  gene_syn F16A16.170, F16A16_170  go_function oxidoreductase activity|GO:0016491||IEA  go_function monooxygenase activity|GO:0004497||ISS  product flavin-containing monooxygenase family protein / FMO family protein  note flavin-containing monooxygenase family protein / FMO family protein; FUNCTIONS IN: oxidoreductase activity, monooxygenase activity; EXPRESSED IN: male gametophyte, sepal, root, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027); BEST Arabidopsis thaliana protein match is: YUCCA5; monooxygenase (TAIR:AT5G43890.1); Has 7537 Blast hits to 7524 proteins in 925 species: Archae - 22; Bacteria - 3615; Metazoa - 675; Fungi - 982; Plants - 362; Viruses - 0; Other Eukaryotes - 1881 (source: NCBI BLink).  protein_id AT4G28720.1p  transcript_id AT4G28720.1  protein_id AT4G28720.1p  transcript_id AT4G28720.1  
At4g28730	chr4:014199174	0.0	W/14199174-14199445,14199620-14199693,14200242-14200316,14200488-14200514,14200636-14200712	AT4G28730.1  CDS  gene_syn F16A16.160, F16A16_160  go_component chloroplast|GO:0009507|18431481|IDA  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  product glutaredoxin family protein  note glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutaredoxin active site (InterPro:IPR011767), Glutaredoxin, eukaryotic and viruses (InterPro:IPR011899), Glutaredoxin subgroup (InterPro:IPR014025), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin family protein (TAIR:AT2G20270.1); Has 3146 Blast hits to 3143 proteins in 777 species: Archae - 0; Bacteria - 1253; Metazoa - 362; Fungi - 221; Plants - 386; Viruses - 107; Other Eukaryotes - 817 (source: NCBI BLink).  protein_id AT4G28730.1p  transcript_id AT4G28730.1  protein_id AT4G28730.1p  transcript_id AT4G28730.1  
At4g28740	chr4:014201051	0.0	W/14201051-14201325,14201544-14202122,14202207-14202257,14202404-14202542	AT4G28740.1  CDS  gene_syn F16A16.150, F16A16_150  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: LPA1 (LOW PSII ACCUMULATION1); binding (TAIR:AT1G02910.1); Has 65 Blast hits to 65 proteins in 19 species: Archae - 0; Bacteria - 17; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G28740.1p  transcript_id AT4G28740.1  protein_id AT4G28740.1p  transcript_id AT4G28740.1  
At4g28750	chr4:014203631	0.0	C/14203631-14203888,14203160-14203225,14202951-14203058	AT4G28750.1  CDS  gene_syn PSA E1 KNOCKOUT, PSAE-1, PSI-E  gene PSAE-1  function mutant has Decreased effective quantum yield of photosystem II; Pale green plants; Reduced growth rate; Subunit E of Photosystem I  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function catalytic activity|GO:0003824||IEA  go_component photosystem I reaction center|GO:0009538||ISS  go_component plastoglobule|GO:0010287|16414959|IDA  go_process response to salt stress|GO:0009651|11351099|IEP  product PSAE-1 (PSA E1 KNOCKOUT); catalytic  note PSA E1 KNOCKOUT (PSAE-1); FUNCTIONS IN: catalytic activity; INVOLVED IN: response to salt stress; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre subunit IV/PsaE (InterPro:IPR003375), Electron transport accessory protein (InterPro:IPR008990); BEST Arabidopsis thaliana protein match is: PSAE-2 (photosystem I subunit E-2); catalytic (TAIR:AT2G20260.1); Has 386 Blast hits to 386 proteins in 111 species: Archae - 0; Bacteria - 159; Metazoa - 5; Fungi - 0; Plants - 62; Viruses - 1; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT4G28750.1p  transcript_id AT4G28750.1  protein_id AT4G28750.1p  transcript_id AT4G28750.1  
At4g28760	chr4:014208640	0.0	W/14208640-14208778,14208902-14208981,14209078-14210814,14210905-14211058,14211147-14211811	AT4G28760.1  CDS  gene_syn F16A16.130, F16A16_130  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20240.1); Has 462 Blast hits to 292 proteins in 64 species: Archae - 0; Bacteria - 181; Metazoa - 46; Fungi - 40; Plants - 143; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT4G28760.1p  transcript_id AT4G28760.1  protein_id AT4G28760.1p  transcript_id AT4G28760.1  
At4g28760	chr4:014208640	0.0	W/14208640-14208778,14208902-14208981,14209078-14210814,14210905-14211058,14211147-14211811	AT4G28760.2  CDS  gene_syn F16A16.130, F16A16_130  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20240.1); Has 462 Blast hits to 292 proteins in 64 species: Archae - 0; Bacteria - 181; Metazoa - 46; Fungi - 40; Plants - 143; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT4G28760.2p  transcript_id AT4G28760.2  protein_id AT4G28760.2p  transcript_id AT4G28760.2  
At4g28770	chr4:014213190	0.0	C/14213190-14213518,14212931-14213030,14212768-14212848,14212585-14212689,14212318-14212506,14212177-14212218	AT4G28770.1  CDS  gene_syn F16A16.120, F16A16_120  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20230.1); Has 94 Blast hits to 94 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G28770.1p  transcript_id AT4G28770.1  protein_id AT4G28770.1p  transcript_id AT4G28770.1  
At4g28775	chr4:014214817	0.0	W/14214817-14215233	AT4G28775.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G28775.1p  transcript_id AT4G28775.1  protein_id AT4G28775.1p  transcript_id AT4G28775.1  
At4g28780	chr4:014215603	0.0	W/14215603-14215849,14215930-14216057,14216256-14216495,14216602-14216857,14216927-14217159	AT4G28780.1  CDS  gene_syn F16A16.110, F16A16_110  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: LTL1 (LI-TOLERANT LIPASE 1); carboxylesterase/ hydrolase, acting on ester bonds (TAIR:AT3G04290.1); Has 1753 Blast hits to 1735 proteins in 130 species: Archae - 0; Bacteria - 174; Metazoa - 1; Fungi - 5; Plants - 1555; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT4G28780.1p  transcript_id AT4G28780.1  protein_id AT4G28780.1p  transcript_id AT4G28780.1  
At4g28790	chr4:014218329	0.0	W/14218329-14218393,14218488-14219208,14219332-14219406,14219503-14219568,14219649-14219714,14219858-14219887	AT4G28790.2  CDS  gene_syn F16A16.100, F16A16_100  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: transcription regulator (TAIR:AT4G28811.1); Has 1763 Blast hits to 1754 proteins in 131 species: Archae - 0; Bacteria - 4; Metazoa - 42; Fungi - 36; Plants - 1678; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G28790.2p  transcript_id AT4G28790.2  protein_id AT4G28790.2p  transcript_id AT4G28790.2  
At4g28790	chr4:014218329	0.0	W/14218329-14218393,14218488-14219208,14219332-14219406,14219503-14219568,14219649-14219714,14219925-14220173	AT4G28790.1  CDS  gene_syn F16A16.100, F16A16_100  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: transcription regulator (TAIR:AT4G28811.1); Has 1837 Blast hits to 1828 proteins in 135 species: Archae - 0; Bacteria - 4; Metazoa - 48; Fungi - 38; Plants - 1746; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G28790.1p  transcript_id AT4G28790.1  protein_id AT4G28790.1p  transcript_id AT4G28790.1  
At4g28800	chr4:014221970	0.0	W/14221970-14222689,14222807-14222881,14222977-14223042,14223121-14223186,14223574-14223900,14223992-14224075	AT4G28800.1  CDS  gene_syn F16A16.90, F16A16_90  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: transcription regulator (TAIR:AT4G28811.1); Has 3042 Blast hits to 2985 proteins in 278 species: Archae - 0; Bacteria - 5; Metazoa - 847; Fungi - 189; Plants - 1921; Viruses - 11; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT4G28800.1p  transcript_id AT4G28800.1  protein_id AT4G28800.1p  transcript_id AT4G28800.1  
At4g28811	chr4:014225335	0.0	W/14225335-14225336,14225426-14225740,14225832-14226540,14226627-14226701,14226789-14226854,14226938-14227003,14227344-14227694,14227790-14227840	AT4G28811.1  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription regulator activity|GO:0030528||IEA  product transcription regulator  note transcription regulator; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT4G28800.1); Has 2468 Blast hits to 2434 proteins in 227 species: Archae - 0; Bacteria - 2; Metazoa - 462; Fungi - 142; Plants - 1839; Viruses - 2; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT4G28811.1p  transcript_id AT4G28811.1  protein_id AT4G28811.1p  transcript_id AT4G28811.1  
At4g28815	chr4:014228719	0.0	W/14228719-14228754,14228877-14229245,14229341-14229415,14229511-14229576,14229651-14229716,14229977-14230288	AT4G28815.1  CDS  go_component nucleus|GO:0005634||IEA  go_component endomembrane system|GO:0012505||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription regulator activity|GO:0030528||IEA  product transcription regulator  note transcription regulator; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: endomembrane system, nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT4G28800.1); Has 2511 Blast hits to 2483 proteins in 235 species: Archae - 0; Bacteria - 0; Metazoa - 605; Fungi - 164; Plants - 1725; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT4G28815.1p  transcript_id AT4G28815.1  protein_id AT4G28815.1p  transcript_id AT4G28815.1  
At4g28820	chr4:014232205	0.0	C/14232205-14232287,14232059-14232090,14231708-14231758,14231518-14231598,14231291-14231383,14231091-14231179,14230951-14231001,14230815-14230853	AT4G28820.2  CDS  gene_syn F16A16.70, F16A16_70  go_process biological_process|GO:0008150||ND  product zinc finger (HIT type) family protein  note zinc finger (HIT type) family protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529); Has 264 Blast hits to 264 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 114; Fungi - 80; Plants - 19; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT4G28820.2p  transcript_id AT4G28820.2  protein_id AT4G28820.2p  transcript_id AT4G28820.2  
At4g28820	chr4:014232205	0.0	C/14232205-14232287,14232059-14232090,14231708-14231758,14231518-14231601,14231291-14231383,14231091-14231179,14230951-14231001,14230815-14230853	AT4G28820.1  CDS  gene_syn F16A16.70, F16A16_70  go_process biological_process|GO:0008150||ND  product zinc finger (HIT type) family protein  note zinc finger (HIT type) family protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529); Has 273 Blast hits to 270 proteins in 109 species: Archae - 0; Bacteria - 2; Metazoa - 116; Fungi - 76; Plants - 19; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT4G28820.1p  transcript_id AT4G28820.1  protein_id AT4G28820.1p  transcript_id AT4G28820.1  
At4g28830	chr4:014232490	0.0	W/14232490-14232549,14232634-14232690,14232906-14233003,14233080-14233149,14233239-14233287,14233372-14233460,14233550-14233597,14233671-14233730,14233822-14233917	AT4G28830.1  CDS  gene_syn F16A16.60, F16A16_60  go_process methylation|GO:0032259||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  product methyltransferase/ nucleic acid binding  note methyltransferase/ nucleic acid binding; FUNCTIONS IN: methyltransferase activity, nucleic acid binding; INVOLVED IN: methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase small (InterPro:IPR007848), N-6 adenine-specific DNA methylase, conserved site (InterPro:IPR002052); Has 2052 Blast hits to 2052 proteins in 760 species: Archae - 135; Bacteria - 1556; Metazoa - 106; Fungi - 2; Plants - 24; Viruses - 0; Other Eukaryotes - 229 (source: NCBI BLink).  protein_id AT4G28830.1p  transcript_id AT4G28830.1  protein_id AT4G28830.1p  transcript_id AT4G28830.1  
At4g28830	chr4:014232490	0.0	W/14232490-14232549,14232634-14232690,14232906-14233003,14233080-14233149,14233239-14233287,14233372-14233460,14233550-14233597,14233682-14233696	AT4G28830.2  CDS  gene_syn F16A16.60, F16A16_60  go_process methylation|GO:0032259||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  product methyltransferase/ nucleic acid binding  note methyltransferase/ nucleic acid binding; FUNCTIONS IN: methyltransferase activity, nucleic acid binding; INVOLVED IN: methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase small (InterPro:IPR007848), N-6 adenine-specific DNA methylase, conserved site (InterPro:IPR002052); Has 2027 Blast hits to 2027 proteins in 757 species: Archae - 133; Bacteria - 1547; Metazoa - 102; Fungi - 2; Plants - 24; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).  protein_id AT4G28830.2p  transcript_id AT4G28830.2  protein_id AT4G28830.2p  transcript_id AT4G28830.2  
At4g28840	chr4:014240867	0.0	W/14240867-14241097,14241417-14241530,14241965-14242038,14242176-14242251,14242427-14242513	AT4G28840.1  CDS  gene_syn F16A16.50, F16A16_50  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20080.1); Has 40 Blast hits to 38 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G28840.1p  transcript_id AT4G28840.1  protein_id AT4G28840.1p  transcript_id AT4G28840.1  
At4g28850	chr4:014244336	0.0	W/14244336-14244507,14244633-14244733,14244856-14245049,14245370-14245781	AT4G28850.1  CDS  gene_syn F16A16.40, F16A16_40  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process cellular glucan metabolic process|GO:0006073||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762||IEA  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative  note xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, apoplast, cell wall; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: XTH21 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 21); hydrolase, acting on glycosyl bonds / xyloglucan endotransglucosylase (TAIR:AT2G18800.1); Has 1400 Blast hits to 1394 proteins in 224 species: Archae - 0; Bacteria - 208; Metazoa - 0; Fungi - 309; Plants - 795; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT4G28850.1p  transcript_id AT4G28850.1  protein_id AT4G28850.1p  transcript_id AT4G28850.1  
At4g28860	chr4:014246359	0.0	W/14246359-14246434,14246513-14246553,14246732-14246801,14246887-14247035,14247156-14247322,14247445-14247506,14247584-14247647,14247786-14247870,14247949-14248075,14248171-14248247,14248421-14248478,14248663-14248790,14249057-14249197	AT4G28860.1  CDS  gene_syn Casein Kinase I-like 4, F16A16.30, F16A16_30, ckl4  gene ckl4  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component nucleus|GO:0005634|16126836|IDA  go_component cytoplasm|GO:0005737|16126836|IDA  go_function kinase activity|GO:0016301||ISS  product ckl4 (Casein Kinase I-like 4); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note Casein Kinase I-like 4 (ckl4); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus, cytoplasm; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ckl3 (Casein Kinase I-like 3); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT4G28880.1); Has 49581 Blast hits to 49221 proteins in 1441 species: Archae - 25; Bacteria - 6110; Metazoa - 21777; Fungi - 5145; Plants - 5994; Viruses - 336; Other Eukaryotes - 10194 (source: NCBI BLink).  protein_id AT4G28860.1p  transcript_id AT4G28860.1  protein_id AT4G28860.1p  transcript_id AT4G28860.1  
At4g28860	chr4:014246359	0.0	W/14246359-14246434,14246513-14246553,14246732-14246801,14246887-14247035,14247156-14247322,14247445-14247506,14247584-14247647,14247786-14247870,14247949-14248075,14248171-14248247,14248421-14248478,14248663-14248823	AT4G28860.2  CDS  gene_syn Casein Kinase I-like 4, F16A16.30, F16A16_30, ckl4  gene ckl4  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component nucleus|GO:0005634|16126836|IDA  go_component cytoplasm|GO:0005737|16126836|IDA  go_function kinase activity|GO:0016301||ISS  product ckl4 (Casein Kinase I-like 4); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note Casein Kinase I-like 4 (ckl4); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus, cytoplasm; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ckl3 (Casein Kinase I-like 3); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT4G28880.1); Has 49599 Blast hits to 49239 proteins in 1441 species: Archae - 25; Bacteria - 6112; Metazoa - 21782; Fungi - 5153; Plants - 5993; Viruses - 336; Other Eukaryotes - 10198 (source: NCBI BLink).  protein_id AT4G28860.2p  transcript_id AT4G28860.2  protein_id AT4G28860.2p  transcript_id AT4G28860.2  
At4g28870	chr4:014250421	0.0	W/14250421-14250720	AT4G28870.1  CDS  gene_syn F25O24.4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G49680.1); Has 21204 Blast hits to 1123 proteins in 154 species: Archae - 0; Bacteria - 19443; Metazoa - 981; Fungi - 104; Plants - 41; Viruses - 117; Other Eukaryotes - 518 (source: NCBI BLink).  protein_id AT4G28870.1p  transcript_id AT4G28870.1  protein_id AT4G28870.1p  transcript_id AT4G28870.1  
At4g28880	chr4:014251351	0.0	W/14251351-14251426,14251523-14251563,14251766-14251835,14251925-14252073,14252177-14252272,14252350-14252420,14252531-14252592,14252668-14252731,14252858-14252942,14253022-14253148,14253256-14253332,14253421-14253478,14253554-14253690,14253914-14254048	AT4G28880.1  CDS  gene_syn Casein Kinase I-like 3, F25O24.3, ckl3  gene ckl3  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product ckl3 (Casein Kinase I-like 3); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note Casein Kinase I-like 3 (ckl3); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ckl4 (Casein Kinase I-like 4); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT4G28860.1); Has 47686 Blast hits to 47386 proteins in 1403 species: Archae - 19; Bacteria - 6033; Metazoa - 20862; Fungi - 4890; Plants - 5655; Viruses - 307; Other Eukaryotes - 9920 (source: NCBI BLink).  protein_id AT4G28880.1p  transcript_id AT4G28880.1  protein_id AT4G28880.1p  transcript_id AT4G28880.1  
At4g28890	chr4:014256437	0.0	C/14256437-14257735	AT4G28890.1  CDS  gene_syn F25O24.10, F25O24_10  go_component endomembrane system|GO:0012505||IEA  go_function ubiquitin-protein ligase activity|GO:0004842|15644464|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product protein binding / ubiquitin-protein ligase/ zinc ion binding  note protein binding / ubiquitin-protein ligase/ zinc ion binding; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: root stele, root endodermis, hypocotyl, root, primary root differentiation zone; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G20030.1); Has 6231 Blast hits to 6214 proteins in 229 species: Archae - 0; Bacteria - 2; Metazoa - 2121; Fungi - 451; Plants - 2680; Viruses - 57; Other Eukaryotes - 920 (source: NCBI BLink).  protein_id AT4G28890.1p  transcript_id AT4G28890.1  protein_id AT4G28890.1p  transcript_id AT4G28890.1  
At4g28900	chr4:014259141	0.0	W/14259141-14263704	AT4G28900.1  mRNA_TE_gene  pseudo  gene_syn F25O24.20, F25O24_20  note Transposable element gene, copia-like retrotransposon family, has a 7.7e-236 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)  
At4g28910	chr4:014264789	0.0	C/14264789-14265680,14264330-14264715	AT4G28910.1  CDS  gene_syn F25O24.30, F25O24_30  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1675 (InterPro:IPR012463); BEST Arabidopsis thaliana protein match is: nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G07250.1); Has 223 Blast hits to 204 proteins in 56 species: Archae - 2; Bacteria - 11; Metazoa - 48; Fungi - 32; Plants - 89; Viruses - 3; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT4G28910.1p  transcript_id AT4G28910.1  protein_id AT4G28910.1p  transcript_id AT4G28910.1  
At4g28910	chr4:014264789	0.0	C/14264789-14265680,14264330-14264715	AT4G28910.2  CDS  gene_syn F25O24.30, F25O24_30  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1675 (InterPro:IPR012463); BEST Arabidopsis thaliana protein match is: nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G07250.1); Has 223 Blast hits to 204 proteins in 56 species: Archae - 2; Bacteria - 11; Metazoa - 48; Fungi - 32; Plants - 89; Viruses - 3; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT4G28910.2p  transcript_id AT4G28910.2  protein_id AT4G28910.2p  transcript_id AT4G28910.2  
At4g28910	chr4:014264789	0.0	C/14264789-14265680,14264330-14264715	AT4G28910.3  CDS  gene_syn F25O24.30, F25O24_30  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1675 (InterPro:IPR012463); BEST Arabidopsis thaliana protein match is: nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G07250.1); Has 223 Blast hits to 204 proteins in 56 species: Archae - 2; Bacteria - 11; Metazoa - 48; Fungi - 32; Plants - 89; Viruses - 3; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT4G28910.3p  transcript_id AT4G28910.3  protein_id AT4G28910.3p  transcript_id AT4G28910.3  
At4g28915	chr4:014267281	0.0	W/14267281-14267362	AT4G28915.1  tRNA  gene_syn 67173.TRNA-SER-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: GCT)  transcript_id AT4G28915.1  
At4g28920	chr4:014269799	0.0	C/14269799-14269885,14269550-14269678,14269220-14269424,14268968-14269113,14268802-14268885,14268415-14268642	AT4G28920.1  CDS  gene_syn F25O24.40, F25O24_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29550.1); Has 65 Blast hits to 64 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G28920.1p  transcript_id AT4G28920.1  protein_id AT4G28920.1p  transcript_id AT4G28920.1  
At4g28930	chr4:014271072	0.0	W/14271072-14271572,14271626-14271652	AT4G28930.1  CDS  gene_syn F25O24.50, F25O24_50  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12930.1); Has 10 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G28930.1p  transcript_id AT4G28930.1  protein_id AT4G28930.1p  transcript_id AT4G28930.1  
At4g28940	chr4:014274414	0.0	W/14274414-14274639,14274987-14275054,14275172-14275327,14275689-14275922,14276558-14276920	AT4G28940.1  CDS  gene_syn F25O24.60, F25O24_60  go_component endomembrane system|GO:0012505||IEA  go_process nucleoside metabolic process|GO:0009116||IEA  go_function catalytic activity|GO:0003824||IEA  product catalytic  note catalytic; FUNCTIONS IN: catalytic activity; INVOLVED IN: nucleoside metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, flower, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Nucleoside phosphorylase (InterPro:IPR000845), Nucleoside phosphorylase, family 1 (InterPro:IPR018017); BEST Arabidopsis thaliana protein match is: phosphorylase family protein (TAIR:AT4G24340.1); Has 1779 Blast hits to 1414 proteins in 613 species: Archae - 0; Bacteria - 1669; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT4G28940.1p  transcript_id AT4G28940.1  protein_id AT4G28940.1p  transcript_id AT4G28940.1  
At4g28950	chr4:014278289	0.0	W/14278289-14278387,14278598-14278685,14278817-14278926,14279029-14279092,14279166-14279224,14279318-14279383,14279464-14279573,14279672-14279705	AT4G28950.1  CDS  gene_syn ARAC7, ATRAC7, ATROP9, F25O24.70, F25O24_70, RAC7, RHO-RELATED PROTEIN FROM PLANTS 9, ROP9  gene ROP9  function A member of ROP GTPase gene family.  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_component plasma membrane|GO:0005886|16805728|IDA  go_function GTP binding|GO:0005525||ISS  product ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9); GTP binding  note RHO-RELATED PROTEIN FROM PLANTS 9 (ROP9); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Ras small GTPase, Ras type (InterPro:IPR003577), Ras small GTPase, Rho type (InterPro:IPR003578); BEST Arabidopsis thaliana protein match is: ROP10 (RHO-RELATED PROTEIN FROM PLANTS 10); GTP binding / GTPase (TAIR:AT3G48040.1); Has 19869 Blast hits to 19846 proteins in 561 species: Archae - 9; Bacteria - 43; Metazoa - 10887; Fungi - 2741; Plants - 1701; Viruses - 19; Other Eukaryotes - 4469 (source: NCBI BLink).  protein_id AT4G28950.1p  transcript_id AT4G28950.1  protein_id AT4G28950.1p  transcript_id AT4G28950.1  
At4g28960	chr4:014280528	0.0	W/14280528-14282864	AT4G28960.1  mRNA_TE_gene  pseudo  gene_syn F25O24.80, F25O24_80  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23930.1); similar to unknown [Atrina ri (GB:AAU04809.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048)  
At4g28970	chr4:014283564	0.0	C/14283564-14287590	AT4G28970.1  mRNA_TE_gene  pseudo  gene_syn F25O24.90, F25O24_90  note Transposable element gene, Mutator-like transposase family, has a 8.1e-76 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At4g28980	chr4:014288471	0.0	W/14288471-14288971,14289164-14290102	AT4G28980.1  CDS  gene_syn CAK1AT, CDK-ACTIVATING KINASE 1AT, CDKF;1, CYCLIN-DEPENDENT KINASE F;1, F19B15.10, F19B15_10  gene CAK1AT  function Encodes a CDK-activating kinase that regulates root initial cell differentiation. Phosphorylates CDKD2 and CDKD3, but not CDKD1. Controls CDK activities and basal transcription.  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process regulation of cyclin-dependent protein kinase activity|GO:0000079|16024551|TAS  go_process protein amino acid phosphorylation|GO:0006468|9560221|IDA  go_process maintenance of root meristem identity|GO:0010078|11069305|IMP  go_function protein serine/threonine kinase activity|GO:0004674|16024551|TAS  go_function protein binding|GO:0005515|17426018|IPI  go_function kinase activity|GO:0016301||ISS  go_function cyclin-dependent protein kinase activating kinase activity|GO:0019912|9560221|IGI  product cyclin-dependent kinase-activating kinase 1At / CDK-activating kinase 1At (CAK1)  note CDK-ACTIVATING KINASE 1AT (CAK1AT); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, cyclin-dependent protein kinase activating kinase activity, kinase activity; INVOLVED IN: maintenance of root meristem identity, regulation of cyclin-dependent protein kinase activity, protein amino acid phosphorylation; LOCATED IN: cytosol, nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CDC2 (CELL DIVISION CONTROL 2); cyclin-dependent protein kinase/ kinase/ protein binding / protein kinase (TAIR:AT3G48750.1); Has 65466 Blast hits to 54170 proteins in 2345 species: Archae - 21; Bacteria - 4833; Metazoa - 29501; Fungi - 8025; Plants - 9386; Viruses - 129; Other Eukaryotes - 13571 (source: NCBI BLink).  protein_id AT4G28980.1p  transcript_id AT4G28980.1  protein_id AT4G28980.1p  transcript_id AT4G28980.1  
At4g28980	chr4:014288471	0.0	W/14288471-14288971,14289164-14290102	AT4G28980.2  CDS  gene_syn CAK1AT, CDK-ACTIVATING KINASE 1AT, CDKF;1, CYCLIN-DEPENDENT KINASE F;1, F19B15.10, F19B15_10  gene CAK1AT  function Encodes a CDK-activating kinase that regulates root initial cell differentiation. Phosphorylates CDKD2 and CDKD3, but not CDKD1. Controls CDK activities and basal transcription.  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process regulation of cyclin-dependent protein kinase activity|GO:0000079|16024551|TAS  go_process protein amino acid phosphorylation|GO:0006468|9560221|IDA  go_process maintenance of root meristem identity|GO:0010078|11069305|IMP  go_function protein serine/threonine kinase activity|GO:0004674|16024551|TAS  go_function protein binding|GO:0005515|17426018|IPI  go_function kinase activity|GO:0016301||ISS  go_function cyclin-dependent protein kinase activating kinase activity|GO:0019912|9560221|IGI  product cyclin-dependent kinase-activating kinase 1At / CDK-activating kinase 1At (CAK1)  note CDK-ACTIVATING KINASE 1AT (CAK1AT); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, cyclin-dependent protein kinase activating kinase activity, kinase activity; INVOLVED IN: maintenance of root meristem identity, regulation of cyclin-dependent protein kinase activity, protein amino acid phosphorylation; LOCATED IN: cytosol, nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CDC2 (CELL DIVISION CONTROL 2); cyclin-dependent protein kinase/ kinase/ protein binding / protein kinase (TAIR:AT3G48750.1); Has 65466 Blast hits to 54170 proteins in 2345 species: Archae - 21; Bacteria - 4833; Metazoa - 29501; Fungi - 8025; Plants - 9386; Viruses - 129; Other Eukaryotes - 13571 (source: NCBI BLink).  protein_id AT4G28980.2p  transcript_id AT4G28980.2  protein_id AT4G28980.2p  transcript_id AT4G28980.2  
At4g28990	chr4:014291205	0.0	W/14291205-14291394,14291491-14291555,14291636-14291714,14292035-14292335,14292466-14293018	AT4G28990.2  CDS  gene_syn F19B15.20, F19B15_20  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product RNA-binding protein-related  note RNA-binding protein-related; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876).  protein_id AT4G28990.2p  transcript_id AT4G28990.2  protein_id AT4G28990.2p  transcript_id AT4G28990.2  
At4g28990	chr4:014291205	0.0	W/14291205-14291394,14292035-14292335,14292466-14293018	AT4G28990.1  CDS  gene_syn F19B15.20, F19B15_20  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product RNA-binding protein-related  note RNA-binding protein-related; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); Has 2238 Blast hits to 1728 proteins in 193 species: Archae - 0; Bacteria - 71; Metazoa - 935; Fungi - 282; Plants - 710; Viruses - 36; Other Eukaryotes - 204 (source: NCBI BLink).  protein_id AT4G28990.1p  transcript_id AT4G28990.1  protein_id AT4G28990.1p  transcript_id AT4G28990.1  
At4g29000	chr4:014293957	0.0	W/14293957-14294276,14294462-14294572,14294782-14294959,14295040-14295393,14295511-14295614,14295697-14295791,14295876-14296277,14296355-14296602	AT4G29000.1  CDS  gene_syn F19B15.30, F19B15_30  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product tesmin/TSO1-like CXC domain-containing protein  note tesmin/TSO1-like CXC domain-containing protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tesmin/TSO1-like, CXC (InterPro:IPR005172); BEST Arabidopsis thaliana protein match is: tesmin/TSO1-like CXC domain-containing protein (TAIR:AT2G20110.1); Has 766 Blast hits to 510 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 256; Fungi - 4; Plants - 174; Viruses - 0; Other Eukaryotes - 332 (source: NCBI BLink).  protein_id AT4G29000.1p  transcript_id AT4G29000.1  protein_id AT4G29000.1p  transcript_id AT4G29000.1  
At4g29010	chr4:014301920	0.0	C/14301920-14302016,14301733-14301804,14301523-14301585,14301382-14301438,14301164-14301231,14300983-14301064,14300813-14300868,14300402-14300704,14300118-14300204,14299851-14300025,14299399-14299520,14299079-14299242,14298739-14298993,14298484-14298605,14298298-14298419,14298058-14298206,14297682-14297820,14297312-14297344	AT4G29010.1  CDS  gene_syn ABNORMAL INFLORESCENCE MERISTEM, AIM1, F19B15.40, F19B15_40  gene AIM1  function Functions in beta-oxidation of fatty acids, similar to CuMFP with L-3-hydroxyacyl-CoA hydrolyase , L-3-hydroxyacyl-dehydrogenase, D-3-hydroxyacyl-CoA epimerase, and 3, 2-enoyl-CoA isomerase activities  go_component cell wall|GO:0005618|16287169|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process fatty acid beta-oxidation|GO:0006635|10521521|ISS  go_process multicellular organismal development|GO:0007275|10521521|IMP  go_process seed germination|GO:0009845|10521521|IMP  go_process flower development|GO:0009908|10521521|IMP  go_function enoyl-CoA hydratase activity|GO:0004300|10521521|IDA  go_function enoyl-CoA hydratase activity|GO:0004300|10521521|IMP  product AIM1 (ABNORMAL INFLORESCENCE MERISTEM); enoyl-CoA hydratase  note ABNORMAL INFLORESCENCE MERISTEM (AIM1); FUNCTIONS IN: enoyl-CoA hydratase activity; INVOLVED IN: flower development, multicellular organismal development, fatty acid beta-oxidation, seed germination; LOCATED IN: cell wall, peroxisome, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Enoyl-CoA hydratase/isomerase, conserved site (InterPro:IPR018376), 3-hydroxyacyl-CoA dehydrogenase, conserved site (InterPro:IPR006180), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), NAD(P)-binding (InterPro:IPR016040), 3-hydroxyacyl-CoA dehydrogenase, NAD binding (InterPro:IPR006176), Crotonase, core (InterPro:IPR001753), 3-hydroxyacyl-CoA dehydrogenase, C-terminal (InterPro:IPR006108); BEST Arabidopsis thaliana protein match is: MFP2 (MULTIFUNCTIONAL PROTEIN 2); 3-hydroxyacyl-CoA dehydrogenase/ enoyl-CoA hydratase (TAIR:AT3G06860.1); Has 33391 Blast hits to 32573 proteins in 1413 species: Archae - 341; Bacteria - 17586; Metazoa - 1751; Fungi - 671; Plants - 362; Viruses - 0; Other Eukaryotes - 12680 (source: NCBI BLink).  protein_id AT4G29010.1p  transcript_id AT4G29010.1  protein_id AT4G29010.1p  transcript_id AT4G29010.1  
At4g29020	chr4:014305032	0.0	W/14305032-14305287,14305423-14305508	AT4G29020.2  CDS  gene_syn F19B15.50, F19B15_50  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages.  protein_id AT4G29020.2p  transcript_id AT4G29020.2  protein_id AT4G29020.2p  transcript_id AT4G29020.2  
At4g29020	chr4:014305032	0.0	W/14305032-14305508	AT4G29020.1  CDS  gene_syn F19B15.50, F19B15_50  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 83971 Blast hits to 21200 proteins in 1263 species: Archae - 175; Bacteria - 30874; Metazoa - 25594; Fungi - 4634; Plants - 7115; Viruses - 1037; Other Eukaryotes - 14542 (source: NCBI BLink).  protein_id AT4G29020.1p  transcript_id AT4G29020.1  protein_id AT4G29020.1p  transcript_id AT4G29020.1  
At4g29030	chr4:014307328	0.0	W/14307328-14307675	AT4G29030.1  CDS  gene_syn F19B15.60, F19B15_60  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; Has 76387 Blast hits to 17861 proteins in 1138 species: Archae - 115; Bacteria - 29932; Metazoa - 23240; Fungi - 4130; Plants - 7544; Viruses - 799; Other Eukaryotes - 10627 (source: NCBI BLink).  protein_id AT4G29030.1p  transcript_id AT4G29030.1  protein_id AT4G29030.1p  transcript_id AT4G29030.1  
At4g29033	chr4:014309316	0.0	C/14309316-14309379,14308967-14309148	AT4G29033.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G29033.1p  transcript_id AT4G29033.1  protein_id AT4G29033.1p  transcript_id AT4G29033.1  
At4g29035	chr4:014310315	0.0	W/14310315-14310770	AT4G29035.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: SPH1 (S-PROTEIN HOMOLOGUE 1) (TAIR:AT4G16295.1); Has 58 Blast hits to 57 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G29035.1p  transcript_id AT4G29035.1  protein_id AT4G29035.1p  transcript_id AT4G29035.1  
At4g29040	chr4:014312369	0.0	W/14312369-14312842,14312936-14313181,14313498-14313667,14313748-14313964,14314054-14314194,14314303-14314386	AT4G29040.1  CDS  gene_syn 26S PROTEASOME AAA-ATPASE SUBUNIT RPT2A, F19B15.70, F19B15_70, RPT2a, regulatory particle AAA-ATPase 2a  gene RPT2a  function 26S proteasome AAA-ATPase subunit RPT2a (RPT2a) mRNA,  go_component membrane|GO:0016020|17432890|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component nucleus|GO:0005634|11742986|TAS  go_component proteasome regulatory particle, base subcomplex|GO:0008540|9741626|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_process response to heat|GO:0009408|17971041|IMP  go_process meristem structural organization|GO:0009933|15073153|IMP  go_process leaf morphogenesis|GO:0009965|15073153|IMP  go_process root morphogenesis|GO:0010015|15073153|IMP  go_process maintenance of root meristem identity|GO:0010078|15073153|IMP  go_process lateral root primordium development|GO:0010386|15073153|IMP  go_process meristem growth|GO:0035266|15073153|IMP  go_process proteasomal ubiquitin-dependent protein catabolic process|GO:0043161|17971041|IMP  go_process proteasome assembly|GO:0043248|17971041|IMP  go_process root development|GO:0048364|17971041|IMP  go_process shoot development|GO:0048367|15073153|IMP  go_process phyllome development|GO:0048827|15073153|IMP  go_process root cap development|GO:0048829|15073153|IMP  go_process response to misfolded protein|GO:0051788|17971041|IMP  go_process proteasome core complex assembly|GO:0080129|17971041|IMP  go_function ATPase activity|GO:0016887|10417703|IGI  go_function ATPase activity|GO:0016887||ISS  product RPT2a (regulatory particle AAA-ATPase 2a); ATPase  note regulatory particle AAA-ATPase 2a (RPT2a); FUNCTIONS IN: ATPase activity; INVOLVED IN: in 18 processes; LOCATED IN: proteasome regulatory particle, base subcomplex, nucleus, membrane; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: 26S protease regulatory complex subunit 4, putative (TAIR:AT2G20140.1); Has 21657 Blast hits to 20066 proteins in 1740 species: Archae - 831; Bacteria - 5757; Metazoa - 4096; Fungi - 2439; Plants - 1700; Viruses - 30; Other Eukaryotes - 6804 (source: NCBI BLink).  protein_id AT4G29040.1p  transcript_id AT4G29040.1  protein_id AT4G29040.1p  transcript_id AT4G29040.1  
At4g29050	chr4:014314870	0.0	C/14314870-14316879	AT4G29050.1  CDS  gene_syn F19B15.80, F19B15_80  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product lectin protein kinase family protein  note lectin protein kinase family protein; FUNCTIONS IN: carbohydrate binding, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin protein kinase family protein (TAIR:AT1G70110.1); Has 89028 Blast hits to 87946 proteins in 3357 species: Archae - 63; Bacteria - 7942; Metazoa - 38300; Fungi - 7177; Plants - 19994; Viruses - 393; Other Eukaryotes - 15159 (source: NCBI BLink).  protein_id AT4G29050.1p  transcript_id AT4G29050.1  protein_id AT4G29050.1p  transcript_id AT4G29050.1  
At4g29060	chr4:014317744	0.0	W/14317744-14319088,14319460-14319666,14319762-14320054,14320130-14320536,14320632-14320956,14321031-14321315	AT4G29060.1  CDS  gene_syn F19B15.90, F19B15_90, emb2726, embryo defective 2726  gene emb2726  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function RNA binding|GO:0003723||IEA  go_function translation elongation factor activity|GO:0003746||IEA  go_process translational elongation|GO:0006414||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function translation elongation factor activity|GO:0003746||ISS  product emb2726 (embryo defective 2726); RNA binding / translation elongation factor  note embryo defective 2726 (emb2726); FUNCTIONS IN: RNA binding, translation elongation factor activity; INVOLVED IN: embryonic development ending in seed dormancy, translational elongation, response to cadmium ion; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), S1, RNA binding (InterPro:IPR003029), Translation elongation factor EFTs/EF1B (InterPro:IPR001816), Translation elongation factor EFTs/EF1B, dimerisation (InterPro:IPR014039), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Translation elongation factor Ts, conserved site (InterPro:IPR018101), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: translation elongation factor Ts (EF-Ts), putative (TAIR:AT4G11120.1); Has 50675 Blast hits to 27365 proteins in 1859 species: Archae - 185; Bacteria - 24529; Metazoa - 6031; Fungi - 1971; Plants - 899; Viruses - 119; Other Eukaryotes - 16941 (source: NCBI BLink).  protein_id AT4G29060.1p  transcript_id AT4G29060.1  protein_id AT4G29060.1p  transcript_id AT4G29060.1  
At4g29060	chr4:014317744	0.0	W/14317744-14319088,14319460-14319666,14319762-14320054,14321031-14321315	AT4G29060.2  CDS  gene_syn F19B15.90, F19B15_90, emb2726, embryo defective 2726  gene emb2726  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function RNA binding|GO:0003723||IEA  go_function translation elongation factor activity|GO:0003746||IEA  go_process translational elongation|GO:0006414||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function translation elongation factor activity|GO:0003746||ISS  product emb2726 (embryo defective 2726); RNA binding / translation elongation factor  note embryo defective 2726 (emb2726); FUNCTIONS IN: RNA binding, translation elongation factor activity; INVOLVED IN: embryonic development ending in seed dormancy, translational elongation, response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Nucleic acid-binding, OB-fold (InterPro:IPR012340), S1, RNA binding (InterPro:IPR003029), Translation elongation factor EFTs/EF1B (InterPro:IPR001816), Translation elongation factor EFTs/EF1B, dimerisation (InterPro:IPR014039), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Translation elongation factor Ts, conserved site (InterPro:IPR018101), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: translation elongation factor Ts (EF-Ts), putative (TAIR:AT4G11120.1); Has 40868 Blast hits to 26179 proteins in 1846 species: Archae - 185; Bacteria - 19529; Metazoa - 5410; Fungi - 1940; Plants - 784; Viruses - 132; Other Eukaryotes - 12888 (source: NCBI BLink).  protein_id AT4G29060.2p  transcript_id AT4G29060.2  protein_id AT4G29060.2p  transcript_id AT4G29060.2  
At4g29070	chr4:014322109	0.0	W/14322109-14322760,14322908-14323035	AT4G29070.1  CDS  gene_syn F19B15.100, F19B15_100  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase A2 (InterPro:IPR016090); Has 22 Blast hits to 22 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G29070.1p  transcript_id AT4G29070.1  protein_id AT4G29070.1p  transcript_id AT4G29070.1  
At4g29070	chr4:014322109	0.0	W/14322109-14322760,14322908-14323035	AT4G29070.2  CDS  gene_syn F19B15.100, F19B15_100  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase A2 (InterPro:IPR016090); Has 22 Blast hits to 22 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G29070.2p  transcript_id AT4G29070.2  protein_id AT4G29070.2p  transcript_id AT4G29070.2  
At4g29080	chr4:014324792	0.0	C/14324792-14325213,14324434-14324687,14324212-14324353,14324006-14324067,14323665-14323702	AT4G29080.1  CDS  gene_syn F19B15.110, F19B15_110, IAA27, INDOLE-3-ACETIC ACID 27, PAP2, PHYTOCHROME-ASSOCIATED PROTEIN 2  gene PAP2  function phytochrome-associated protein 2 (PAP2)  go_component nucleus|GO:0005634||IEA  go_component intracellular|GO:0005622||ISS  go_process regulation of translation|GO:0006417||ISS  go_process response to auxin stimulus|GO:0009733|12036262|TAS  go_process response to auxin stimulus|GO:0009733||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2); transcription factor  note PHYTOCHROME-ASSOCIATED PROTEIN 2 (PAP2); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to auxin stimulus, regulation of translation; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA9 (INDOLE-3-ACETIC ACID INDUCIBLE 9); transcription factor (TAIR:AT5G65670.2); Has 1143 Blast hits to 1141 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1141; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G29080.1p  transcript_id AT4G29080.1  protein_id AT4G29080.1p  transcript_id AT4G29080.1  
At4g29090	chr4:014333528	0.0	W/14333528-14335255	AT4G29090.1  CDS  gene_syn F19B15.120, F19B15_120  go_component endomembrane system|GO:0012505||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process RNA-dependent DNA replication|GO:0006278||ISS  go_function RNA binding|GO:0003723||ISS  go_function RNA-directed DNA polymerase activity|GO:0003964||ISS  product reverse transcriptase, putative / RNA-dependent DNA polymerase, putative  note reverse transcriptase, putative / RNA-dependent DNA polymerase, putative; FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity, nucleic acid binding; INVOLVED IN: RNA-dependent DNA replication; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT2G34320.1); Has 1391 Blast hits to 1329 proteins in 27 species: Archae - 2; Bacteria - 4; Metazoa - 10; Fungi - 0; Plants - 1374; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G29090.1p  transcript_id AT4G29090.1  protein_id AT4G29090.1p  transcript_id AT4G29090.1  
At4g29100	chr4:014341140	0.0	W/14341140-14341468,14341704-14342082,14342353-14342433,14343065-14343130,14343290-14343355,14343624-14343683,14343839-14343883,14344378-14344575	AT4G29100.1  CDS  gene_syn F19B15.130, F19B15_130  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product ethylene-responsive family protein  note ethylene-responsive family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: ethylene-responsive family protein (TAIR:AT2G20100.1); Has 1505 Blast hits to 1340 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 20; Plants - 516; Viruses - 0; Other Eukaryotes - 864 (source: NCBI BLink).  protein_id AT4G29100.1p  transcript_id AT4G29100.1  protein_id AT4G29100.1p  transcript_id AT4G29100.1  
At4g29103	chr4:014346288	0.0	C/14346288-14346500	AT4G29103.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G29103.1p  transcript_id AT4G29103.1  protein_id AT4G29103.1p  transcript_id AT4G29103.1  
At4g29110	chr4:014348866	0.0	W/14348866-14349468	AT4G29110.1  CDS  gene_syn F19B15.140, F19B15_140  go_component vacuole|GO:0005773|15539469|IDA  go_process response to chitin|GO:0010200|17722694|IEP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to chitin; LOCATED IN: vacuole; Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G29110.1p  transcript_id AT4G29110.1  protein_id AT4G29110.1p  transcript_id AT4G29110.1  
At4g29120	chr4:014350861	0.0	W/14350861-14351865	AT4G29120.1  CDS  gene_syn F19B15.150, F19B15_150  go_process pentose-phosphate shunt|GO:0006098||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function phosphogluconate dehydrogenase (decarboxylating) activity|GO:0004616||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function coenzyme binding|GO:0050662||IEA  go_function catalytic activity|GO:0003824||ISS  product 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein  note 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein; FUNCTIONS IN: coenzyme binding, oxidoreductase activity, phosphogluconate dehydrogenase (decarboxylating) activity, binding, catalytic activity; INVOLVED IN: pentose-phosphate shunt, metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), 3-hydroxyacid dehydrogenase/reductase (InterPro:IPR015815), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein (TAIR:AT1G71180.1); Has 12459 Blast hits to 12442 proteins in 1308 species: Archae - 93; Bacteria - 6200; Metazoa - 393; Fungi - 342; Plants - 184; Viruses - 2; Other Eukaryotes - 5245 (source: NCBI BLink).  protein_id AT4G29120.1p  transcript_id AT4G29120.1  protein_id AT4G29120.1p  transcript_id AT4G29120.1  
At4g29130	chr4:014354594	0.0	C/14354594-14354865,14353818-14353968,14353547-14353729,14353387-14353461,14353053-14353307,14352828-14352958,14352338-14352761	AT4G29130.1  CDS  gene_syn ARABIDOPSIS THALIANA HEXOKINASE 1, ATHXK1, F19B15.160, F19B15_160, GIN2, GLUCOSE INSENSITIVE 2, HEXOKINASE, HEXOKINASE 1, HXK1  gene HXK1  function Encodes a hexokinase (HXK1) in the plant glucose-signaling network. Functions as a glucose sensor to interrelate nutrient, light, and hormone signaling networks for controlling growth and development in response to the changing environment.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component nucleus|GO:0005634|17081979|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component mitochondrion|GO:0005739|16920781|TAS  go_component mitochondrion|GO:0005739|18481082|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process sugar mediated signaling|GO:0010182|12663220|TAS  go_process glucose mediated signaling|GO:0010255|12690200|IMP  go_process programmed cell death|GO:0012501|16920781|IMP  go_process hexose catabolic process|GO:0019320|10402427|IDA  go_function glucokinase activity|GO:0004340|10402427|IDA  go_function glucokinase activity|GO:0004340|11851922|IDA  go_function hexokinase activity|GO:0004396|10402427|IDA  go_function hexokinase activity|GO:0004396|17324236|IDA  go_function hexokinase activity|GO:0004396||ISS  go_function ATP binding|GO:0005524||ISS  go_function fructokinase activity|GO:0008865|10402427|IDA  product HXK1 (HEXOKINASE 1); ATP binding / fructokinase/ glucokinase/ hexokinase  note HEXOKINASE 1 (HXK1); FUNCTIONS IN: hexokinase activity, fructokinase activity, glucokinase activity, ATP binding; INVOLVED IN: glucose mediated signaling, sugar mediated signaling, hexose catabolic process, programmed cell death; LOCATED IN: in 6 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Hexokinase (InterPro:IPR001312); BEST Arabidopsis thaliana protein match is: HXK2 (HEXOKINASE 2); ATP binding / fructokinase/ glucokinase/ hexokinase (TAIR:AT2G19860.1); Has 1788 Blast hits to 1540 proteins in 233 species: Archae - 0; Bacteria - 31; Metazoa - 1037; Fungi - 396; Plants - 204; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).  protein_id AT4G29130.1p  transcript_id AT4G29130.1  protein_id AT4G29130.1p  transcript_id AT4G29130.1  
At4g29140	chr4:014369148	0.0	W/14369148-14370746	AT4G29140.1  CDS  gene_syn F19B15.170, F19B15_170  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020|11152613|ISS  go_function transporter activity|GO:0005215||ISS  product MATE efflux protein-related  note MATE efflux protein-related; FUNCTIONS IN: antiporter activity, drug transporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; EXPRESSED IN: shoot apex, embryo, hypocotyl, root; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux protein-related (TAIR:AT5G19700.1); Has 5768 Blast hits to 5732 proteins in 1089 species: Archae - 114; Bacteria - 3729; Metazoa - 128; Fungi - 208; Plants - 689; Viruses - 0; Other Eukaryotes - 900 (source: NCBI BLink).  protein_id AT4G29140.1p  transcript_id AT4G29140.1  protein_id AT4G29140.1p  transcript_id AT4G29140.1  
At4g29150	chr4:014378770	0.0	W/14378770-14379204,14379293-14379481,14379765-14380340	AT4G29150.1  CDS  gene_syn F19B15.180, F19B15_180, IQ-domain 25, IQD25  gene IQD25  go_function calmodulin binding|GO:0005516||ISS  product IQD25 (IQ-domain 25); calmodulin binding  note IQ-domain 25 (IQD25); FUNCTIONS IN: calmodulin binding; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQD26 (IQ-domain 26); calmodulin binding (TAIR:AT3G16490.1); Has 418 Blast hits to 414 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 2; Plants - 383; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT4G29150.1p  transcript_id AT4G29150.1  protein_id AT4G29150.1p  transcript_id AT4G29150.1  
At4g29160	chr4:014381019	0.0	W/14381019-14381090,14381341-14381440,14381519-14381604,14381692-14381783,14381954-14382068,14382148-14382342	AT4G29160.1  CDS  gene_syn F19B15.190, F19B15_190, SNF7.1, VPS32  gene SNF7.1  go_component ESCRT III complex|GO:0000815|17090720|ISS  go_process vesicle-mediated transport|GO:0016192|16488176|ISS  product SNF7.1  note SNF7.1; INVOLVED IN: vesicle-mediated transport; LOCATED IN: ESCRT III complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7.2 (TAIR:AT2G19830.1); Has 1405 Blast hits to 1405 proteins in 174 species: Archae - 0; Bacteria - 25; Metazoa - 599; Fungi - 312; Plants - 280; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).  protein_id AT4G29160.1p  transcript_id AT4G29160.1  protein_id AT4G29160.1p  transcript_id AT4G29160.1  
At4g29160	chr4:014381019	0.0	W/14381019-14381090,14381341-14381440,14381519-14381604,14381692-14381783,14381954-14382068,14382148-14382342	AT4G29160.3  CDS  gene_syn F19B15.190, F19B15_190, SNF7.1, VPS32  gene SNF7.1  go_component ESCRT III complex|GO:0000815|17090720|ISS  go_process vesicle-mediated transport|GO:0016192|16488176|ISS  product SNF7.1  note SNF7.1; INVOLVED IN: vesicle-mediated transport; LOCATED IN: ESCRT III complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7.2 (TAIR:AT2G19830.1); Has 1405 Blast hits to 1405 proteins in 174 species: Archae - 0; Bacteria - 25; Metazoa - 599; Fungi - 312; Plants - 280; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).  protein_id AT4G29160.3p  transcript_id AT4G29160.3  protein_id AT4G29160.3p  transcript_id AT4G29160.3  
At4g29160	chr4:014381350	0.0	W/14381350-14381440,14381519-14381604,14381692-14381783,14381954-14382068,14382148-14382342	AT4G29160.2  CDS  gene_syn F19B15.190, F19B15_190, SNF7.1, VPS32  gene SNF7.1  go_component ESCRT III complex|GO:0000815|17090720|ISS  go_process vesicle-mediated transport|GO:0016192|16488176|ISS  product SNF7.1  note SNF7.1; INVOLVED IN: vesicle-mediated transport; LOCATED IN: ESCRT III complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7.2 (TAIR:AT2G19830.1); Has 1249 Blast hits to 1249 proteins in 167 species: Archae - 0; Bacteria - 7; Metazoa - 523; Fungi - 292; Plants - 279; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink).  protein_id AT4G29160.2p  transcript_id AT4G29160.2  protein_id AT4G29160.2p  transcript_id AT4G29160.2  
At4g29170	chr4:014382985	0.0	W/14382985-14382987,14383552-14383632,14383817-14383933,14384043-14384081,14384181-14384288,14384370-14384432,14384514-14384565,14384707-14384751,14384848-14384927,14385024-14385128	AT4G29170.1  CDS  gene_syn ATMND1, F19B15.200, F19B15_200  gene ATMND1  function A homolog of yeast, mouse and human mnd1delta protein. Null mutants exhibit normal vegetative and flower development; however, during prophase I, chromosomes become fragmented resulting in random distribution of the fragments between polyads. Both male and female meiosis are defective and strong accumulation of AtRAD51 was observed in the inflorescence nuclei of mutant plants. Similarly to its yeast and animal homologues, AtMnd1 might play a role in DSB repair during meiosis.  go_component cellular_component|GO:0005575||ND  go_process double-strand break repair|GO:0006302|16442857|IMP  go_process embryo sac development|GO:0009553|16442857|IMP  go_process pollen development|GO:0009555|16442857|IMP  go_process response to ionizing radiation|GO:0010212|16442857|IMP  go_function molecular_function|GO:0003674||ND  product ATMND1  note ATMND1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: double-strand break repair, embryo sac development, response to ionizing radiation, pollen development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Meiotic nuclear division protein 1 (InterPro:IPR005647); Has 207 Blast hits to 207 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 69; Fungi - 66; Plants - 20; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT4G29170.1p  transcript_id AT4G29170.1  protein_id AT4G29170.1p  transcript_id AT4G29170.1  
At4g29170	chr4:014383594	0.0	W/14383594-14383632,14383817-14383933,14384043-14384081,14384181-14384288,14384370-14384432,14384514-14384565,14384707-14384751,14384848-14384927,14385024-14385128	AT4G29170.2  CDS  gene_syn ATMND1, F19B15.200, F19B15_200  gene ATMND1  function A homolog of yeast, mouse and human mnd1delta protein. Null mutants exhibit normal vegetative and flower development; however, during prophase I, chromosomes become fragmented resulting in random distribution of the fragments between polyads. Both male and female meiosis are defective and strong accumulation of AtRAD51 was observed in the inflorescence nuclei of mutant plants. Similarly to its yeast and animal homologues, AtMnd1 might play a role in DSB repair during meiosis.  go_component cellular_component|GO:0005575||ND  go_process double-strand break repair|GO:0006302|16442857|IMP  go_process embryo sac development|GO:0009553|16442857|IMP  go_process pollen development|GO:0009555|16442857|IMP  go_process response to ionizing radiation|GO:0010212|16442857|IMP  go_function molecular_function|GO:0003674||ND  product ATMND1  note ATMND1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: double-strand break repair, embryo sac development, response to ionizing radiation, pollen development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Meiotic nuclear division protein 1 (InterPro:IPR005647); Has 201 Blast hits to 201 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 69; Fungi - 64; Plants - 20; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT4G29170.2p  transcript_id AT4G29170.2  protein_id AT4G29170.2p  transcript_id AT4G29170.2  
At4g29180	chr4:014385631	0.0	W/14385631-14385709,14385990-14387024,14387125-14387214,14387322-14387433,14387512-14387583,14387673-14387753,14387828-14387970,14388055-14388308,14388388-14388514,14388597-14388659,14388763-14388952,14389035-14389524	AT4G29180.1  CDS  gene_syn F19B15.210, F19B15_210  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat protein kinase, putative  note leucine-rich repeat protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT4G29450.1); Has 96268 Blast hits to 86973 proteins in 3163 species: Archae - 60; Bacteria - 7830; Metazoa - 37326; Fungi - 6568; Plants - 29178; Viruses - 372; Other Eukaryotes - 14934 (source: NCBI BLink).  protein_id AT4G29180.1p  transcript_id AT4G29180.1  protein_id AT4G29180.1p  transcript_id AT4G29180.1  
At4g29190	chr4:014392233	0.0	C/14392233-14393303	AT4G29190.1  CDS  gene_syn F17A13.10, F17A13_10  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product zinc finger (CCCH-type) family protein  note zinc finger (CCCH-type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein (TAIR:AT2G19810.1); Has 488 Blast hits to 464 proteins in 96 species: Archae - 0; Bacteria - 0; Metazoa - 133; Fungi - 2; Plants - 211; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink).  protein_id AT4G29190.1p  transcript_id AT4G29190.1  protein_id AT4G29190.1p  transcript_id AT4G29190.1  
At4g29200	chr4:014400183	0.0	C/14400183-14400198,14398054-14399411	AT4G29200.1  CDS  gene_syn F17A13.20, F17A13_20  go_component beta-galactosidase complex|GO:0009341||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  product beta-galactosidase  note beta-galactosidase; FUNCTIONS IN: beta-galactosidase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: beta-galactosidase complex; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944); BEST Arabidopsis thaliana protein match is: beta-galactosidase (TAIR:AT5G49250.1); Has 17 Blast hits to 17 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G29200.1p  transcript_id AT4G29200.1  protein_id AT4G29200.1p  transcript_id AT4G29200.1  
At4g29210	chr4:014400990	0.0	W/14400990-14401116,14401257-14401597,14401682-14402704,14402816-14402953,14403035-14403319	AT4G29210.1  CDS  gene_syn F17A13.30, F17A13_30, GAMMA-GLUTAMYL TRANSPEPTIDASE 3, GAMMA-GLUTAMYL TRANSPEPTIDASE 4, GGT3, GGT4  gene GGT4  function The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in the vacuole and is most active in roots. The encoded enzyme is involved in the initial degradation of glutathione conjugates in this cell compartment. It is also induced by xenobiotics and contributes to xenobiotics metabolism.  go_component vacuole|GO:0005773|17316176|IDA  go_process glutathione catabolic process|GO:0006751|17316176|IDA  go_process xenobiotic metabolic process|GO:0006805|17316176|IEP  go_function gamma-glutamyltransferase activity|GO:0003840|17561001|IMP  go_function gamma-glutamyltransferase activity|GO:0003840||ISS  go_function glutathione gamma-glutamylcysteinyltransferase activity|GO:0016756|17316176|IDA  product GGT4 (GAMMA-GLUTAMYL TRANSPEPTIDASE 4); gamma-glutamyltransferase/ glutathione gamma-glutamylcysteinyltransferase  note GAMMA-GLUTAMYL TRANSPEPTIDASE 4 (GGT4); FUNCTIONS IN: gamma-glutamyltransferase activity, glutathione gamma-glutamylcysteinyltransferase activity; INVOLVED IN: xenobiotic metabolic process, glutathione catabolic process; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gamma-glutamyltranspeptidase (InterPro:IPR000101); BEST Arabidopsis thaliana protein match is: GGT2 (GAMMA-GLUTAMYL TRANSPEPTIDASE 2); gamma-glutamyltransferase/ glutathione gamma-glutamylcysteinyltransferase (TAIR:AT4G39650.1); Has 7199 Blast hits to 7182 proteins in 885 species: Archae - 45; Bacteria - 2584; Metazoa - 602; Fungi - 194; Plants - 56; Viruses - 1; Other Eukaryotes - 3717 (source: NCBI BLink).  protein_id AT4G29210.1p  transcript_id AT4G29210.1  protein_id AT4G29210.1p  transcript_id AT4G29210.1  
At4g29210	chr4:014400990	0.0	W/14400990-14401116,14401257-14401597,14401682-14402752	AT4G29210.2  CDS  gene_syn F17A13.30, F17A13_30, GAMMA-GLUTAMYL TRANSPEPTIDASE 3, GAMMA-GLUTAMYL TRANSPEPTIDASE 4, GGT3, GGT4  gene GGT4  function The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in the vacuole and is most active in roots. The encoded enzyme is involved in the initial degradation of glutathione conjugates in this cell compartment. It is also induced by xenobiotics and contributes to xenobiotics metabolism.  go_component vacuole|GO:0005773|17316176|IDA  go_process glutathione catabolic process|GO:0006751|17316176|IDA  go_process xenobiotic metabolic process|GO:0006805|17316176|IEP  go_function gamma-glutamyltransferase activity|GO:0003840|17561001|IMP  go_function gamma-glutamyltransferase activity|GO:0003840||ISS  go_function glutathione gamma-glutamylcysteinyltransferase activity|GO:0016756|17316176|IDA  product GGT4 (GAMMA-GLUTAMYL TRANSPEPTIDASE 4); gamma-glutamyltransferase/ glutathione gamma-glutamylcysteinyltransferase  note GAMMA-GLUTAMYL TRANSPEPTIDASE 4 (GGT4); FUNCTIONS IN: gamma-glutamyltransferase activity, glutathione gamma-glutamylcysteinyltransferase activity; INVOLVED IN: xenobiotic metabolic process, glutathione catabolic process; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gamma-glutamyltranspeptidase (InterPro:IPR000101); BEST Arabidopsis thaliana protein match is: GGT2 (GAMMA-GLUTAMYL TRANSPEPTIDASE 2); gamma-glutamyltransferase/ glutathione gamma-glutamylcysteinyltransferase (TAIR:AT4G39650.1); Has 6812 Blast hits to 6798 proteins in 877 species: Archae - 45; Bacteria - 2558; Metazoa - 597; Fungi - 194; Plants - 56; Viruses - 1; Other Eukaryotes - 3361 (source: NCBI BLink).  protein_id AT4G29210.2p  transcript_id AT4G29210.2  protein_id AT4G29210.2p  transcript_id AT4G29210.2  
At4g29220	chr4:014405967	0.0	C/14405967-14406071,14405756-14405802,14405615-14405654,14405467-14405529,14405256-14405393,14404955-14405167,14404823-14404891,14404593-14404722,14404235-14404503,14404101-14404143,14403862-14404016,14403621-14403770	AT4G29220.1  CDS  gene_syn F17A13.40, F17A13_40, PFK1, PHOSPHOFRUCTOKINASE 1  gene PFK1  go_component cytosol|GO:0005829|17485088|IDA  go_component plasma membrane|GO:0005886|17485088|IDA  go_component 6-phosphofructokinase complex|GO:0005945||ISS  go_process glycolysis|GO:0006096|17485088|IDA  go_process glycolysis|GO:0006096||ISS  go_function 6-phosphofructokinase activity|GO:0003872|17485088|IDA  go_function 6-phosphofructokinase activity|GO:0003872||ISS  product PFK1 (PHOSPHOFRUCTOKINASE 1); 6-phosphofructokinase  note PHOSPHOFRUCTOKINASE 1 (PFK1); FUNCTIONS IN: 6-phosphofructokinase activity; INVOLVED IN: glycolysis; LOCATED IN: cytosol, 6-phosphofructokinase complex, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase TP0108 (InterPro:IPR012004), Phosphofructokinase (InterPro:IPR000023); BEST Arabidopsis thaliana protein match is: PFK3 (PHOSPHOFRUCTOKINASE 3); 6-phosphofructokinase (TAIR:AT4G26270.1); Has 4869 Blast hits to 4507 proteins in 1179 species: Archae - 20; Bacteria - 2587; Metazoa - 578; Fungi - 223; Plants - 227; Viruses - 2; Other Eukaryotes - 1232 (source: NCBI BLink).  protein_id AT4G29220.1p  transcript_id AT4G29220.1  protein_id AT4G29220.1p  transcript_id AT4G29220.1  
At4g29230	chr4:014410338	0.0	W/14410338-14410463,14410777-14410957,14411391-14412046,14412558-14412857,14413673-14413804,14414855-14414956	AT4G29230.1  CDS  gene_syn Arabidopsis NAC domain containing protein 75, F17A13.50, F17A13_50, anac075  gene anac075  go_process regulation of transcription|GO:0045449||IEA  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac075 (Arabidopsis NAC domain containing protein 75); transcription factor  note Arabidopsis NAC domain containing protein 75 (anac075); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; EXPRESSED IN: inflorescence meristem, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac099 (Arabidopsis NAC domain containing protein 99); transcription factor (TAIR:AT5G56620.1); Has 1978 Blast hits to 1845 proteins in 148 species: Archae - 0; Bacteria - 17; Metazoa - 479; Fungi - 50; Plants - 1218; Viruses - 3; Other Eukaryotes - 211 (source: NCBI BLink).  protein_id AT4G29230.1p  transcript_id AT4G29230.1  protein_id AT4G29230.1p  transcript_id AT4G29230.1  
At4g29240	chr4:014418826	0.0	W/14418826-14420073	AT4G29240.1  CDS  gene_syn F17A13.60, F17A13_60  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein / extensin family protein  note leucine-rich repeat family protein / extensin family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / extensin family protein (TAIR:AT2G19780.1); Has 38949 Blast hits to 13615 proteins in 683 species: Archae - 14; Bacteria - 1576; Metazoa - 7490; Fungi - 359; Plants - 27074; Viruses - 28; Other Eukaryotes - 2408 (source: NCBI BLink).  protein_id AT4G29240.1p  transcript_id AT4G29240.1  protein_id AT4G29240.1p  transcript_id AT4G29240.1  
At4g29250	chr4:014420713	0.0	W/14420713-14421186,14421269-14422177	AT4G29250.1  CDS  gene_syn F17A13.70, F17A13_70  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT3G23840.1); Has 692 Blast hits to 692 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 11; Plants - 681; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G29250.1p  transcript_id AT4G29250.1  protein_id AT4G29250.1p  transcript_id AT4G29250.1  
At4g29260	chr4:014423030	0.0	C/14423030-14423409,14422581-14422790,14422310-14422487	AT4G29260.1  CDS  gene_syn F17A13.80, F17A13_80  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_function acid phosphatase activity|GO:0003993||IEA  go_process biological_process|GO:0008150||ND  go_function acid phosphatase activity|GO:0003993||ISS  product acid phosphatase class B family protein  note acid phosphatase class B family protein; FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519), Vegetative storage protein/acid phosphatase (InterPro:IPR014403), Acid phosphatase, plant (InterPro:IPR010028); BEST Arabidopsis thaliana protein match is: acid phosphatase class B family protein (TAIR:AT4G29270.1); Has 464 Blast hits to 464 proteins in 114 species: Archae - 0; Bacteria - 180; Metazoa - 2; Fungi - 0; Plants - 237; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT4G29260.1p  transcript_id AT4G29260.1  protein_id AT4G29260.1p  transcript_id AT4G29260.1  
At4g29270	chr4:014424466	0.0	C/14424466-14424848,14424060-14424269,14423797-14423974	AT4G29270.1  CDS  gene_syn F17A13.90, F17A13_90  go_component endomembrane system|GO:0012505||IEA  go_function acid phosphatase activity|GO:0003993||IEA  go_process biological_process|GO:0008150||ND  go_function acid phosphatase activity|GO:0003993||ISS  product acid phosphatase class B family protein  note acid phosphatase class B family protein; FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519), Vegetative storage protein/acid phosphatase (InterPro:IPR014403), Acid phosphatase, plant (InterPro:IPR010028); BEST Arabidopsis thaliana protein match is: acid phosphatase class B family protein (TAIR:AT4G29260.1); Has 412 Blast hits to 412 proteins in 104 species: Archae - 0; Bacteria - 157; Metazoa - 0; Fungi - 0; Plants - 243; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT4G29270.1p  transcript_id AT4G29270.1  protein_id AT4G29270.1p  transcript_id AT4G29270.1  
At4g29273	chr4:014425762	0.0	C/14425762-14425813,14425441-14425622	AT4G29273.1  CDS  gene_syn LCR23, Low-molecular-weight cysteine-rich 23  gene LCR23  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR23 (Low-molecular-weight cysteine-rich 23)  note Low-molecular-weight cysteine-rich 23 (LCR23); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); BEST Arabidopsis thaliana protein match is: LCR35 (Low-molecular-weight cysteine-rich 35) (TAIR:AT2G22121.1); Has 27 Blast hits to 27 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G29273.1p  transcript_id AT4G29273.1  protein_id AT4G29273.1p  transcript_id AT4G29273.1  
At4g29276	chr4:014426790	0.0	C/14426790-14427183	AT4G29276.1  pseudogenic_transcript  pseudo  function Pseudogene of AT4G29270; acid phosphatase class B family protein  
At4g29280	chr4:014428214	0.0	C/14428214-14428265,14427901-14428082	AT4G29280.1  CDS  gene_syn F17A13.100, F17A13_100, LCR22, Low-molecular-weight cysteine-rich 22  gene LCR22  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR22 (Low-molecular-weight cysteine-rich 22)  note Low-molecular-weight cysteine-rich 22 (LCR22); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); BEST Arabidopsis thaliana protein match is: LCR21 (Low-molecular-weight cysteine-rich 21) (TAIR:AT4G29283.1); Has 36 Blast hits to 36 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G29280.1p  transcript_id AT4G29280.1  protein_id AT4G29280.1p  transcript_id AT4G29280.1  
At4g29281	chr4:014429177	0.0	C/14429177-14429548	AT4G29281.1  pseudogenic_transcript  pseudo  function Pseudogene of AT4G29270; acid phosphatase class B family protein  
At4g29283	chr4:014430550	0.0	C/14430550-14430601,14430223-14430419	AT4G29283.1  CDS  gene_syn LCR21, Low-molecular-weight cysteine-rich 21  gene LCR21  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR21 (Low-molecular-weight cysteine-rich 21)  note Low-molecular-weight cysteine-rich 21 (LCR21); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); BEST Arabidopsis thaliana protein match is: LCR22 (Low-molecular-weight cysteine-rich 22) (TAIR:AT4G29280.1); Has 36 Blast hits to 36 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G29283.1p  transcript_id AT4G29283.1  protein_id AT4G29283.1p  transcript_id AT4G29283.1  
At4g29285	chr4:014431613	0.0	W/14431613-14431664,14431995-14432173	AT4G29285.1  CDS  gene_syn LCR24, Low-molecular-weight cysteine-rich 24  gene LCR24  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR24 (Low-molecular-weight cysteine-rich 24)  note Low-molecular-weight cysteine-rich 24 (LCR24); LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); BEST Arabidopsis thaliana protein match is: LCR37 (Low-molecular-weight cysteine-rich 37) (TAIR:AT4G13095.1); Has 27 Blast hits to 27 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G29285.1p  transcript_id AT4G29285.1  protein_id AT4G29285.1p  transcript_id AT4G29285.1  
At4g29290	chr4:014433033	0.0	C/14433033-14433084,14432741-14432922	AT4G29290.1  CDS  gene_syn F17A13.110, F17A13_110, LCR26, Low-molecular-weight cysteine-rich 26  gene LCR26  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product LCR26 (Low-molecular-weight cysteine-rich 26)  note Low-molecular-weight cysteine-rich 26 (LCR26); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: LCR25 (Low-molecular-weight cysteine-rich 25) (TAIR:AT4G29305.1); Has 31 Blast hits to 31 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G29290.1p  transcript_id AT4G29290.1  protein_id AT4G29290.1p  transcript_id AT4G29290.1  
At4g29300	chr4:014434430	0.0	C/14434430-14434481,14434135-14434316	AT4G29300.1  CDS  gene_syn F17A13.120, F17A13_120, LCR27, Low-molecular-weight cysteine-rich 27  gene LCR27  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product LCR27 (Low-molecular-weight cysteine-rich 27)  note Low-molecular-weight cysteine-rich 27 (LCR27); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: LCR25 (Low-molecular-weight cysteine-rich 25) (TAIR:AT4G29305.1); Has 29 Blast hits to 29 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G29300.1p  transcript_id AT4G29300.1  protein_id AT4G29300.1p  transcript_id AT4G29300.1  
At4g29305	chr4:014436580	0.0	C/14436580-14436631,14436284-14436465	AT4G29305.1  CDS  gene_syn LCR25, Low-molecular-weight cysteine-rich 25  gene LCR25  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR25 (Low-molecular-weight cysteine-rich 25)  note Low-molecular-weight cysteine-rich 25 (LCR25); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: LCR26 (Low-molecular-weight cysteine-rich 26) (TAIR:AT4G29290.1); Has 29 Blast hits to 29 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G29305.1p  transcript_id AT4G29305.1  protein_id AT4G29305.1p  transcript_id AT4G29305.1  
At4g29310	chr4:014439008	0.0	C/14439008-14439609,14438550-14438920,14437892-14438193	AT4G29310.1  CDS  gene_syn F17A13.130, F17A13_130  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1005 (InterPro:IPR010410); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10020.1); Has 73 Blast hits to 73 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G29310.1p  transcript_id AT4G29310.1  protein_id AT4G29310.1p  transcript_id AT4G29310.1  
At4g29330	chr4:014444937	0.0	W/14444937-14444953,14445551-14445686,14445793-14445866,14445954-14446047,14446297-14446425,14446508-14446668,14446763-14446952	AT4G29330.1  CDS  gene_syn DER1, DERLIN-1, F17A13.150, F17A13_150  gene DER1  go_component cellular_component|GO:0005575||ND  go_process proteolysis|GO:0006508||ISS  go_function molecular_function|GO:0003674||ND  product DER1 (DERLIN-1)  note DERLIN-1 (DER1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Der1-like (InterPro:IPR007599); BEST Arabidopsis thaliana protein match is: DER2.2 (DERLIN-2.2) (TAIR:AT4G04860.1); Has 666 Blast hits to 665 proteins in 170 species: Archae - 0; Bacteria - 12; Metazoa - 290; Fungi - 127; Plants - 84; Viruses - 0; Other Eukaryotes - 153 (source: NCBI BLink).  protein_id AT4G29330.1p  transcript_id AT4G29330.1  protein_id AT4G29330.1p  transcript_id AT4G29330.1  
At4g29340	chr4:014447718	0.0	W/14447718-14447849,14448110-14448247,14448333-14448467	AT4G29340.1  CDS  gene_syn F17A13.160, F17A13_160, PRF4, PROFILIN 4  gene PRF4  function Profilin is a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton in eukaryotes, including higher plants. PRF4 and PRF5 are late pollen-specific and are not detectable in other cell types of the plant body including microspores and root hairs. Immunocytochemical studies at the subcellular level reveal that both the constitutive and pollen-specific profilins are abundant in the cytoplasm. In vegetative cell types, such as root apical cells, profilins showed localization to nuclei in addition to the cytoplasmic staining.  go_process cytoskeleton organization|GO:0007010||IEA  go_process actin cytoskeleton organization|GO:0030036||IEA  go_function actin binding|GO:0003779||IEA  go_component nucleus|GO:0005634|15469496|IDA  go_component cytoplasm|GO:0005737|11977080|IDA  go_component actin cytoskeleton|GO:0015629||ISS  go_process cytoskeleton organization|GO:0007010||ISS  go_function actin binding|GO:0003779||ISS  product PRF4 (PROFILIN 4); actin binding  note PROFILIN 4 (PRF4); FUNCTIONS IN: actin binding; INVOLVED IN: cytoskeleton organization, actin cytoskeleton organization; LOCATED IN: nucleus, actin cytoskeleton, cytoplasm; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Profilin/allergen (InterPro:IPR002097), Profilin, plant (InterPro:IPR005455); BEST Arabidopsis thaliana protein match is: PRF5 (PROFILIN5); actin binding / actin monomer binding (TAIR:AT2G19770.1); Has 749 Blast hits to 748 proteins in 194 species: Archae - 0; Bacteria - 2; Metazoa - 110; Fungi - 85; Plants - 493; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT4G29340.1p  transcript_id AT4G29340.1  protein_id AT4G29340.1p  transcript_id AT4G29340.1  
At4g29350	chr4:014450135	0.0	W/14450135-14450257,14450736-14450873,14450985-14451119	AT4G29350.1  CDS  gene_syn F17A13.170, F17A13_170, PFN2, PRF2, PRO2, PROFILIN, PROFILIN 2  gene PFN2  function Encodes profilin2, a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton. Expressed in vegetative organs. The first intron of PRF2 enhances gene expression.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component cytoplasm|GO:0005737|8647830|TAS  go_component actin cytoskeleton|GO:0015629||ISS  go_process cytoskeleton organization|GO:0007010||ISS  go_process actin polymerization or depolymerization|GO:0008154|8647830|IDA  go_function actin binding|GO:0003779||ISS  go_function protein binding|GO:0005515|16313636|IPI  product PFN2 (PROFILIN 2); actin binding / protein binding  note PROFILIN 2 (PFN2); FUNCTIONS IN: protein binding, actin binding; INVOLVED IN: actin polymerization or depolymerization, cytoskeleton organization; LOCATED IN: chloroplast, plasma membrane, actin cytoskeleton, cytoplasm; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Profilin/allergen (InterPro:IPR002097), Profilin, plant (InterPro:IPR005455); BEST Arabidopsis thaliana protein match is: PRF1 (PROFILIN 1); actin binding (TAIR:AT2G19760.1); Has 772 Blast hits to 771 proteins in 205 species: Archae - 0; Bacteria - 2; Metazoa - 120; Fungi - 91; Plants - 494; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT4G29350.1p  transcript_id AT4G29350.1  protein_id AT4G29350.1p  transcript_id AT4G29350.1  
At4g29360	chr4:014453630	0.0	C/14453630-14453687,14452528-14453364,14451881-14452452	AT4G29360.2  CDS  gene_syn F17A13.180, F17A13_180  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, anchored to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT5G56590.1); Has 1755 Blast hits to 1720 proteins in 117 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 9; Plants - 1731; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT4G29360.2p  transcript_id AT4G29360.2  protein_id AT4G29360.2p  transcript_id AT4G29360.2  
At4g29360	chr4:014453630	0.0	C/14453630-14453687,14452528-14453364,14451943-14452452,14451809-14451851,14451562-14451718	AT4G29360.1  CDS  gene_syn F17A13.180, F17A13_180  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, anchored to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT5G56590.1); Has 1761 Blast hits to 1726 proteins in 122 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 15; Plants - 1731; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT4G29360.1p  transcript_id AT4G29360.1  protein_id AT4G29360.1p  transcript_id AT4G29360.1  
At4g29370	chr4:014455602	0.0	W/14455602-14456738	AT4G29370.1  CDS  gene_syn F17A13.190, F17A13_190  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39560.1); Has 1493 Blast hits to 1380 proteins in 121 species: Archae - 3; Bacteria - 45; Metazoa - 722; Fungi - 17; Plants - 634; Viruses - 23; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT4G29370.1p  transcript_id AT4G29370.1  protein_id AT4G29370.1p  transcript_id AT4G29370.1  
At4g29380	chr4:014458822	0.0	W/14458822-14459094,14459224-14459346,14459424-14459469,14459548-14459708,14459959-14460038,14460191-14460296,14460487-14460663,14460741-14463740,14463973-14464214,14464313-14464412,14464516-14464692	AT4G29380.1  CDS  gene_syn F17A13.200, F17A13_200  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function binding|GO:0005488||IEA  go_function ATP binding|GO:0005524||IEA  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function ATP binding|GO:0005524||ISS  product protein kinase family protein / WD-40 repeat family protein  note protein kinase family protein / WD-40 repeat family protein; FUNCTIONS IN: protein serine/threonine kinase activity, binding, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), WD40 repeat (InterPro:IPR001680), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), WD40 repeat-like (InterPro:IPR011046), Protein kinase, core (InterPro:IPR000719), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ATMPK17; MAP kinase (TAIR:AT2G01450.4); Has 22501 Blast hits to 21498 proteins in 784 species: Archae - 14; Bacteria - 1742; Metazoa - 9576; Fungi - 3366; Plants - 2686; Viruses - 41; Other Eukaryotes - 5076 (source: NCBI BLink).  protein_id AT4G29380.1p  transcript_id AT4G29380.1  protein_id AT4G29380.1p  transcript_id AT4G29380.1  
At4g29390	chr4:014465899	0.0	C/14465899-14465902,14465638-14465775,14465212-14465258	AT4G29390.1  CDS  gene_syn F17A13.210, F17A13_210  go_component nucleolus|GO:0005730|15496452|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S30 (RPS30B)  note 40S ribosomal protein S30 (RPS30B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome, nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S30 (InterPro:IPR006846); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S30 (RPS30C) (TAIR:AT5G56670.1); Has 487 Blast hits to 487 proteins in 186 species: Archae - 2; Bacteria - 0; Metazoa - 223; Fungi - 90; Plants - 56; Viruses - 1; Other Eukaryotes - 115 (source: NCBI BLink).  protein_id AT4G29390.1p  transcript_id AT4G29390.1  protein_id AT4G29390.1p  transcript_id AT4G29390.1  
At4g29400	chr4:014466350	0.0	W/14466350-14466736,14466901-14466986,14467137-14467215,14467321-14467380,14467489-14467610,14467690-14467761,14467878-14467980	AT4G29400.1  CDS  gene_syn F17A13.220, F17A13_220  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08400.2); Has 259 Blast hits to 259 proteins in 63 species: Archae - 0; Bacteria - 100; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink).  protein_id AT4G29400.1p  transcript_id AT4G29400.1  protein_id AT4G29400.1p  transcript_id AT4G29400.1  
At4g29410	chr4:014469817	0.0	C/14469817-14469964,14469419-14469582,14468439-14468558	AT4G29410.1  CDS  gene_syn F17A13.230, F17A13_230  go_component plasma membrane|GO:0005886|17317660|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L28 (RPL28C)  note 60S ribosomal protein L28 (RPL28C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, ribosome, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L28e (InterPro:IPR002672); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L28 (RPL28A) (TAIR:AT2G19730.3); Has 371 Blast hits to 371 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 207; Fungi - 60; Plants - 72; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT4G29410.1p  transcript_id AT4G29410.1  protein_id AT4G29410.1p  transcript_id AT4G29410.1  
At4g29410	chr4:014469817	0.0	C/14469817-14469964,14469419-14469582,14468439-14468558	AT4G29410.2  CDS  gene_syn F17A13.230, F17A13_230  go_component plasma membrane|GO:0005886|17317660|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L28 (RPL28C)  note 60S ribosomal protein L28 (RPL28C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, ribosome, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L28e (InterPro:IPR002672); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L28 (RPL28A) (TAIR:AT2G19730.3); Has 371 Blast hits to 371 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 207; Fungi - 60; Plants - 72; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT4G29410.2p  transcript_id AT4G29410.2  protein_id AT4G29410.2p  transcript_id AT4G29410.2  
At4g29415	chr4:014470278	0.0	W/14470278-14470349	AT4G29415.1  tRNA  gene_syn 67175.TRNA-PRO-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT4G29415.1  
At4g29420	chr4:014471757	0.0	C/14471757-14472204,14470715-14471607	AT4G29420.1  CDS  gene_syn F17A13.240, F17A13_240  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); Has 44 Blast hits to 42 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G29420.1p  transcript_id AT4G29420.1  protein_id AT4G29420.1p  transcript_id AT4G29420.1  
At4g29430	chr4:014472440	0.0	W/14472440-14472569,14473047-14473207,14473285-14473383	AT4G29430.1  CDS  gene_syn F17A13.250, F17A13_250, ribosomal protein S15A E, rps15ae  gene rps15ae  go_component vacuole|GO:0005773|15539469|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component mitochondrion|GO:0005739|11971146|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product rps15ae (ribosomal protein S15A E); structural constituent of ribosome  note ribosomal protein S15A E (rps15ae); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, mitochondrion, cytosolic ribosome, vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8 (InterPro:IPR000630); BEST Arabidopsis thaliana protein match is: rps15ab (ribosomal protein S15A B); structural constituent of ribosome (TAIR:AT2G19720.1); Has 2257 Blast hits to 2257 proteins in 736 species: Archae - 184; Bacteria - 865; Metazoa - 322; Fungi - 130; Plants - 184; Viruses - 0; Other Eukaryotes - 572 (source: NCBI BLink).  protein_id AT4G29430.1p  transcript_id AT4G29430.1  protein_id AT4G29430.1p  transcript_id AT4G29430.1  
At4g29440	chr4:014477681	0.0	C/14477681-14477683,14477457-14477543,14477282-14477385,14477038-14477209,14476805-14476942,14476493-14476712,14473942-14476406	AT4G29440.2  CDS  gene_syn F17A13.260, F17A13_260  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19710.1); Has 12216 Blast hits to 7172 proteins in 496 species: Archae - 12; Bacteria - 1398; Metazoa - 5898; Fungi - 1822; Plants - 449; Viruses - 78; Other Eukaryotes - 2559 (source: NCBI BLink).  protein_id AT4G29440.2p  transcript_id AT4G29440.2  protein_id AT4G29440.2p  transcript_id AT4G29440.2  
At4g29440	chr4:014477681	0.0	C/14477681-14477721,14477457-14477589,14477282-14477385,14477038-14477209,14476805-14476942,14476493-14476712,14473942-14476406	AT4G29440.1  CDS  gene_syn F17A13.260, F17A13_260  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19710.1); Has 12344 Blast hits to 7209 proteins in 495 species: Archae - 12; Bacteria - 1410; Metazoa - 5910; Fungi - 1844; Plants - 450; Viruses - 77; Other Eukaryotes - 2641 (source: NCBI BLink).  protein_id AT4G29440.1p  transcript_id AT4G29440.1  protein_id AT4G29440.1p  transcript_id AT4G29440.1  
At4g29450	chr4:014482551	0.0	C/14482551-14482626,14481157-14482197,14480864-14481071,14480710-14480781,14480549-14480629,14480323-14480468,14480000-14480241,14479797-14479923,14479645-14479707,14479346-14479535,14478837-14479182	AT4G29450.1  CDS  gene_syn F17A13.270, F17A13_270  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat protein kinase, putative  note leucine-rich repeat protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT4G29180.1); Has 96109 Blast hits to 87634 proteins in 3248 species: Archae - 56; Bacteria - 7881; Metazoa - 37665; Fungi - 6728; Plants - 28516; Viruses - 355; Other Eukaryotes - 14908 (source: NCBI BLink).  protein_id AT4G29450.1p  transcript_id AT4G29450.1  protein_id AT4G29450.1p  transcript_id AT4G29450.1  
At4g29460	chr4:014483813	0.0	C/14483813-14483930,14483587-14483706,14483346-14483519,14483066-14483217	AT4G29460.1  CDS  gene_syn F17A13.280, F17A13_280  go_component endomembrane system|GO:0012505||IEA  go_process phospholipid metabolic process|GO:0006644||IEA  go_process lipid catabolic process|GO:0016042||IEA  go_function phospholipase A2 activity|GO:0004623||IEA  go_function phospholipase A2 activity|GO:0004623||ISS  product phospholipase A2 gamma, secretory low molecular weight  note phospholipase A2 gamma, secretory low molecular weight; FUNCTIONS IN: phospholipase A2 activity; INVOLVED IN: phospholipid metabolic process, lipid catabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Phospholipase A2, active site (InterPro:IPR013090), Phospholipase A2 (InterPro:IPR016090); BEST Arabidopsis thaliana protein match is: phospholipase A2, putative (TAIR:AT4G29470.1); Has 201 Blast hits to 201 proteins in 45 species: Archae - 0; Bacteria - 14; Metazoa - 130; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G29460.1p  transcript_id AT4G29460.1  protein_id AT4G29460.1p  transcript_id AT4G29460.1  
At4g29470	chr4:014485637	0.0	C/14485637-14485714,14485491-14485530,14485295-14485414,14484970-14485143,14484591-14484754	AT4G29470.1  CDS  gene_syn F17A13.290, F17A13_290  go_component endomembrane system|GO:0012505||IEA  go_process phospholipid metabolic process|GO:0006644||IEA  go_process lipid catabolic process|GO:0016042||IEA  go_function phospholipase A2 activity|GO:0004623||IEA  go_function phospholipase A2 activity|GO:0004623||ISS  product phospholipase A2, putative  note phospholipase A2, putative; FUNCTIONS IN: phospholipase A2 activity; INVOLVED IN: phospholipid metabolic process, lipid catabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Phospholipase A2, active site (InterPro:IPR013090), Phospholipase A2 (InterPro:IPR016090); BEST Arabidopsis thaliana protein match is: phospholipase A2 gamma, secretory low molecular weight (TAIR:AT4G29460.1); Has 182 Blast hits to 182 proteins in 36 species: Archae - 0; Bacteria - 10; Metazoa - 115; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G29470.1p  transcript_id AT4G29470.1  protein_id AT4G29470.1p  transcript_id AT4G29470.1  
At4g29480	chr4:014487076	0.0	C/14487076-14487257,14486265-14486451	AT4G29480.1  CDS  go_component mitochondrion|GO:0005739|15276431|IDA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_function hydrogen ion transmembrane transporter activity|GO:0015078||IEA  go_process proton transport|GO:0015992||ISS  product mitochondrial ATP synthase g subunit family protein  note mitochondrial ATP synthase g subunit family protein; FUNCTIONS IN: hydrogen ion transmembrane transporter activity; INVOLVED IN: proton transport, ATP synthesis coupled proton transport; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F0 complex, subunit G, mitochondrial (InterPro:IPR006808); BEST Arabidopsis thaliana protein match is: mitochondrial ATP synthase g subunit family protein (TAIR:AT2G19680.2); Has 56 Blast hits to 56 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G29480.1p  transcript_id AT4G29480.1  protein_id AT4G29480.1p  transcript_id AT4G29480.1  
At4g29490	chr4:014487943	0.0	W/14487943-14488071,14488182-14488231,14488324-14488384,14488504-14488599,14488680-14488829,14489031-14489162,14489433-14489560,14489664-14489706,14489785-14489868,14490028-14490069,14490211-14490281,14490476-14490529,14490610-14490715,14490812-14490880,14490967-14491110,14491220-14491321	AT4G29490.1  CDS  gene_syn F17A13.310, F17A13_310  go_component chloroplast|GO:0009507||IEA  go_process cellular process|GO:0009987||IEA  go_function aminopeptidase activity|GO:0004177||IEA  go_function manganese ion binding|GO:0030145||IEA  product aminopeptidase/ manganese ion binding  note aminopeptidase/ manganese ion binding; FUNCTIONS IN: manganese ion binding, aminopeptidase activity; INVOLVED IN: cellular process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal (InterPro:IPR007865), Peptidase M24, structural domain (InterPro:IPR000994); BEST Arabidopsis thaliana protein match is: metallopeptidase M24 family protein (TAIR:AT1G09300.2); Has 7096 Blast hits to 7089 proteins in 1383 species: Archae - 160; Bacteria - 3987; Metazoa - 333; Fungi - 234; Plants - 49; Viruses - 0; Other Eukaryotes - 2333 (source: NCBI BLink).  protein_id AT4G29490.1p  transcript_id AT4G29490.1  protein_id AT4G29490.1p  transcript_id AT4G29490.1  
At4g29510	chr4:014491739	0.0	W/14491739-14491976,14492072-14492082,14492205-14492360,14492457-14492520,14492601-14492743,14492834-14492921,14493029-14493144,14493235-14493385,14493547-14493752	AT4G29510.1  CDS  gene_syn ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARGININE METHYLTRANSFERASE 11, ATPRMT11, ATPRMT1B, PRMT11, PRMT1B, PROTEIN ARGININE METHYLTRANSFERASE 1B, T16L4.20, T16L4_20  gene PRMT11  function Has arginine N-methyltransferase activity. Modifies AtMBD7.  go_component nucleus|GO:0005634|17711414|IDA  go_function protein-arginine N-methyltransferase activity|GO:0016274|17711414|IDA  go_function protein-arginine N-methyltransferase activity|GO:0016274||ISS  product PRMT11 (ARGININE METHYLTRANSFERASE 11); protein-arginine N-methyltransferase  note ARGININE METHYLTRANSFERASE 11 (PRMT11); FUNCTIONS IN: protein-arginine N-methyltransferase activity; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 12 (InterPro:IPR013217); BEST Arabidopsis thaliana protein match is: PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A); protein-arginine N-methyltransferase (TAIR:AT2G19670.1); Has 1886 Blast hits to 1855 proteins in 365 species: Archae - 39; Bacteria - 307; Metazoa - 969; Fungi - 160; Plants - 164; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).  protein_id AT4G29510.1p  transcript_id AT4G29510.1  protein_id AT4G29510.1p  transcript_id AT4G29510.1  
At4g29520	chr4:014495448	0.0	C/14495448-14495657,14495247-14495357,14495019-14495087,14494778-14494909,14494588-14494665,14494366-14494497,14494056-14494244	AT4G29520.1  CDS  gene_syn T16L4.30, T16L4_30  go_component plasma membrane|GO:0005886|17317660|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  product unknown protein  note LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Saposin B (InterPro:IPR008139); Has 120 Blast hits to 120 proteins in 43 species: Archae - 2; Bacteria - 0; Metazoa - 42; Fungi - 10; Plants - 19; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT4G29520.1p  transcript_id AT4G29520.1  protein_id AT4G29520.1p  transcript_id AT4G29520.1  
At4g29530	chr4:014496164	0.0	W/14496164-14496301,14496391-14496512,14496601-14496802,14497035-14497310	AT4G29530.1  CDS  gene_syn T16L4.40, T16L4_40  go_process metabolic process|GO:0008152||IEA  go_function phosphatase activity|GO:0016791||IEA  go_component cellular_component|GO:0005575||ND  go_function catalytic activity|GO:0003824||ISS  product 2,3-diketo-5-methylthio-1-phosphopentane phosphatase family  note 2,3-diketo-5-methylthio-1-phosphopentane phosphatase family; FUNCTIONS IN: phosphatase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate phosphatase, PHOSPHO2 (InterPro:IPR016965), HAD-superfamily hydrolase, subfamily IB, PSPase-like (InterPro:IPR006383), Pyridoxal phosphate phosphatase-related (InterPro:IPR006384); BEST Arabidopsis thaliana protein match is: phosphatase (TAIR:AT1G17710.1); Has 269 Blast hits to 267 proteins in 80 species: Archae - 0; Bacteria - 19; Metazoa - 155; Fungi - 12; Plants - 57; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT4G29530.1p  transcript_id AT4G29530.1  protein_id AT4G29530.1p  transcript_id AT4G29530.1  
At4g29540	chr4:014497775	0.0	W/14497775-14497859,14497963-14498042,14498295-14498419,14498515-14498623,14498732-14498824,14498907-14499023,14499101-14499184,14499256-14499360,14499460-14499546,14499640-14499765	AT4G29540.2  CDS  gene_syn T16L4.50, T16L4_50  go_process lipid biosynthetic process|GO:0008610||IEA  go_function acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity|GO:0008780||IEA  go_function transferase activity|GO:0016740||IEA  product bacterial transferase hexapeptide repeat-containing protein  note bacterial transferase hexapeptide repeat-containing protein; FUNCTIONS IN: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity, transferase activity; INVOLVED IN: lipid biosynthetic process; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), Bacterial transferase hexapeptide repeat (InterPro:IPR001451), Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (InterPro:IPR010137); BEST Arabidopsis thaliana protein match is: bacterial transferase hexapeptide repeat-containing protein (TAIR:AT4G05210.1); Has 9535 Blast hits to 9338 proteins in 1163 species: Archae - 61; Bacteria - 4988; Metazoa - 5; Fungi - 14; Plants - 30; Viruses - 3; Other Eukaryotes - 4434 (source: NCBI BLink).  protein_id AT4G29540.2p  transcript_id AT4G29540.2  protein_id AT4G29540.2p  transcript_id AT4G29540.2  
At4g29540	chr4:014497775	0.0	W/14497775-14497859,14497963-14498042,14498295-14498419,14498515-14498623,14498732-14498824,14498907-14499023,14499101-14499184,14499256-14499360,14499460-14499546,14499646-14499765	AT4G29540.1  CDS  gene_syn T16L4.50, T16L4_50  go_process lipid biosynthetic process|GO:0008610||IEA  go_function acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity|GO:0008780||IEA  go_function transferase activity|GO:0016740||IEA  product bacterial transferase hexapeptide repeat-containing protein  note bacterial transferase hexapeptide repeat-containing protein; FUNCTIONS IN: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity, transferase activity; INVOLVED IN: lipid biosynthetic process; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), Bacterial transferase hexapeptide repeat (InterPro:IPR001451), Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (InterPro:IPR010137); BEST Arabidopsis thaliana protein match is: bacterial transferase hexapeptide repeat-containing protein (TAIR:AT4G05210.1); Has 9543 Blast hits to 9346 proteins in 1163 species: Archae - 61; Bacteria - 4984; Metazoa - 5; Fungi - 14; Plants - 30; Viruses - 3; Other Eukaryotes - 4446 (source: NCBI BLink).  protein_id AT4G29540.1p  transcript_id AT4G29540.1  protein_id AT4G29540.1p  transcript_id AT4G29540.1  
At4g29548	chr4:014501976	0.0	C/14501976-14502191	AT4G29548.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G29548.1p  transcript_id AT4G29548.1  protein_id AT4G29548.1p  transcript_id AT4G29548.1  
At4g29550	chr4:014502433	0.0	W/14502433-14502729,14502813-14502944,14503032-14503236,14503321-14503763	AT4G29550.1  CDS  gene_syn T16L4.60, T16L4_60  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44770.2); Has 78 Blast hits to 77 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G29550.1p  transcript_id AT4G29550.1  protein_id AT4G29550.1p  transcript_id AT4G29550.1  
At4g29560	chr4:014505806	0.0	C/14505806-14505999,14504421-14505708	AT4G29560.1  CDS  gene_syn T16L4.70, T16L4_70  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; Has 20 Blast hits to 20 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G29560.1p  transcript_id AT4G29560.1  protein_id AT4G29560.1p  transcript_id AT4G29560.1  
At4g29570	chr4:014507398	0.0	W/14507398-14508279	AT4G29570.1  CDS  gene_syn T16L4.80, T16L4_80  go_process cytidine metabolic process|GO:0046087||IEA  go_function catalytic activity|GO:0003824||IEA  go_function cytidine deaminase activity|GO:0004126||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process cytidine deamination|GO:0009972||ISS  go_function cytidine deaminase activity|GO:0004126||ISS  product cytidine deaminase, putative / cytidine aminohydrolase, putative  note cytidine deaminase, putative / cytidine aminohydrolase, putative; FUNCTIONS IN: hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding; INVOLVED IN: cytidine deamination, cytidine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytidine deaminase, homodimeric (InterPro:IPR006263), APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Cytidine and deoxycytidylate deaminase, zinc-binding region (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: cytidine deaminase, putative / cytidine aminohydrolase, putative (TAIR:AT4G29580.1); Has 644 Blast hits to 644 proteins in 264 species: Archae - 0; Bacteria - 525; Metazoa - 0; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT4G29570.1p  transcript_id AT4G29570.1  protein_id AT4G29570.1p  transcript_id AT4G29570.1  
At4g29580	chr4:014510147	0.0	W/14510147-14511039,14511405-14511476,14511562-14511661,14511717-14511776,14511892-14512015,14512098-14512186	AT4G29580.2  CDS  gene_syn T16L4.90, T16L4_90  go_process cytidine metabolic process|GO:0046087||IEA  go_function catalytic activity|GO:0003824||IEA  go_function cytidine deaminase activity|GO:0004126||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process cytidine deamination|GO:0009972||ISS  go_function cytidine deaminase activity|GO:0004126||ISS  product cytidine deaminase, putative / cytidine aminohydrolase, putative  note cytidine deaminase, putative / cytidine aminohydrolase, putative; FUNCTIONS IN: hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding; INVOLVED IN: cytidine deamination, cytidine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Cytidine deaminase, homodimeric (InterPro:IPR006263), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Cytidine and deoxycytidylate deaminase, zinc-binding region (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: cytidine deaminase, putative / cytidine aminohydrolase, putative (TAIR:AT4G29570.1).  protein_id AT4G29580.2p  transcript_id AT4G29580.2  protein_id AT4G29580.2p  transcript_id AT4G29580.2  
At4g29580	chr4:014510147	0.0	W/14510147-14511043	AT4G29580.1  CDS  gene_syn T16L4.90, T16L4_90  go_process cytidine metabolic process|GO:0046087||IEA  go_function catalytic activity|GO:0003824||IEA  go_function cytidine deaminase activity|GO:0004126||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process cytidine deamination|GO:0009972||ISS  go_function cytidine deaminase activity|GO:0004126||ISS  product cytidine deaminase, putative / cytidine aminohydrolase, putative  note cytidine deaminase, putative / cytidine aminohydrolase, putative; FUNCTIONS IN: hydrolase activity, cytidine deaminase activity, zinc ion binding, catalytic activity; INVOLVED IN: cytidine deamination, cytidine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Cytidine deaminase, homodimeric (InterPro:IPR006263), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Cytidine and deoxycytidylate deaminase, zinc-binding region (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: cytidine deaminase, putative / cytidine aminohydrolase, putative (TAIR:AT4G29570.1); Has 802 Blast hits to 802 proteins in 313 species: Archae - 0; Bacteria - 619; Metazoa - 3; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).  protein_id AT4G29580.1p  transcript_id AT4G29580.1  protein_id AT4G29580.1p  transcript_id AT4G29580.1  
At4g29590	chr4:014514120	0.0	C/14514120-14514404,14513927-14513994,14513658-14513805,14513485-14513565,14513315-14513401,14513137-14513222,14512919-14513039,14512736-14512813	AT4G29590.1  CDS  gene_syn T16L4.100, T16L4_100  go_component chloroplast|GO:0009507|18431481|IDA  go_process metabolic process|GO:0008152||IEA  go_function methyltransferase activity|GO:0008168||IEA  product methyltransferase  note methyltransferase; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: methyltransferase (TAIR:AT3G01660.1); Has 626 Blast hits to 626 proteins in 170 species: Archae - 20; Bacteria - 319; Metazoa - 0; Fungi - 8; Plants - 44; Viruses - 0; Other Eukaryotes - 235 (source: NCBI BLink).  protein_id AT4G29590.1p  transcript_id AT4G29590.1  protein_id AT4G29590.1p  transcript_id AT4G29590.1  
At4g29600	chr4:014515578	0.0	W/14515578-14516501	AT4G29600.1  CDS  gene_syn T16L4.110, T16L4_110  go_process cytidine metabolic process|GO:0046087||IEA  go_function catalytic activity|GO:0003824||IEA  go_function cytidine deaminase activity|GO:0004126||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process cytidine deamination|GO:0009972||ISS  go_function cytidine deaminase activity|GO:0004126||ISS  product cytidine deaminase, putative / cytidine aminohydrolase, putative  note cytidine deaminase, putative / cytidine aminohydrolase, putative; FUNCTIONS IN: hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding; INVOLVED IN: cytidine deamination, cytidine metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytidine deaminase, homodimeric (InterPro:IPR006263), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Cytidine and deoxycytidylate deaminase, zinc-binding region (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: cytidine deaminase, putative / cytidine aminohydrolase, putative (TAIR:AT4G29620.1); Has 1578 Blast hits to 1571 proteins in 623 species: Archae - 30; Bacteria - 1085; Metazoa - 107; Fungi - 30; Plants - 81; Viruses - 0; Other Eukaryotes - 245 (source: NCBI BLink).  protein_id AT4G29600.1p  transcript_id AT4G29600.1  protein_id AT4G29600.1p  transcript_id AT4G29600.1  
At4g29610	chr4:014517448	0.0	W/14517448-14518329	AT4G29610.1  CDS  gene_syn T16L4.120, T16L4_120  go_process cytidine metabolic process|GO:0046087||IEA  go_function catalytic activity|GO:0003824||IEA  go_function cytidine deaminase activity|GO:0004126||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process cytidine deamination|GO:0009972||ISS  go_function cytidine deaminase activity|GO:0004126||ISS  product cytidine deaminase, putative / cytidine aminohydrolase, putative  note cytidine deaminase, putative / cytidine aminohydrolase, putative; FUNCTIONS IN: hydrolase activity, cytidine deaminase activity, zinc ion binding, catalytic activity; INVOLVED IN: cytidine deamination, cytidine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cytidine deaminase, homodimeric (InterPro:IPR006263), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Cytidine and deoxycytidylate deaminase, zinc-binding region (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: cytidine deaminase, putative / cytidine aminohydrolase, putative (TAIR:AT4G29600.1); Has 1918 Blast hits to 1904 proteins in 755 species: Archae - 34; Bacteria - 1291; Metazoa - 114; Fungi - 61; Plants - 80; Viruses - 0; Other Eukaryotes - 338 (source: NCBI BLink).  protein_id AT4G29610.1p  transcript_id AT4G29610.1  protein_id AT4G29610.1p  transcript_id AT4G29610.1  
At4g29620	chr4:014519892	0.0	W/14519892-14520905	AT4G29620.1  CDS  gene_syn T16L4.130, T16L4_130  go_process cytidine metabolic process|GO:0046087||IEA  go_function catalytic activity|GO:0003824||IEA  go_function cytidine deaminase activity|GO:0004126||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process cytidine deamination|GO:0009972||ISS  go_function cytidine deaminase activity|GO:0004126||ISS  product cytidine deaminase, putative / cytidine aminohydrolase, putative  note cytidine deaminase, putative / cytidine aminohydrolase, putative; FUNCTIONS IN: hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding; INVOLVED IN: cytidine deamination, cytidine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cytidine deaminase, homodimeric (InterPro:IPR006263), APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), Cytidine deaminase-like (InterPro:IPR016193), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine and deoxycytidylate deaminase, zinc-binding region (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: cytidine deaminase, putative / cytidine aminohydrolase, putative (TAIR:AT4G29600.1); Has 1041 Blast hits to 1036 proteins in 424 species: Archae - 24; Bacteria - 744; Metazoa - 63; Fungi - 6; Plants - 81; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).  protein_id AT4G29620.1p  transcript_id AT4G29620.1  protein_id AT4G29620.1p  transcript_id AT4G29620.1  
At4g29630	chr4:014522569	0.0	W/14522569-14523240	AT4G29630.1  CDS  gene_syn T16L4.140, T16L4_140  go_process cytidine metabolic process|GO:0046087||IEA  go_function catalytic activity|GO:0003824||IEA  go_function cytidine deaminase activity|GO:0004126||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process cytidine deamination|GO:0009972||ISS  go_function cytidine deaminase activity|GO:0004126||ISS  product cytidine deaminase, putative / cytidine aminohydrolase, putative  note cytidine deaminase, putative / cytidine aminohydrolase, putative; FUNCTIONS IN: hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding; INVOLVED IN: cytidine deamination, cytidine metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytidine deaminase, homodimeric (InterPro:IPR006263), APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Cytidine and deoxycytidylate deaminase, zinc-binding region (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: cytidine deaminase, putative / cytidine aminohydrolase, putative (TAIR:AT4G29600.1); Has 1860 Blast hits to 1860 proteins in 712 species: Archae - 32; Bacteria - 1259; Metazoa - 130; Fungi - 45; Plants - 80; Viruses - 0; Other Eukaryotes - 314 (source: NCBI BLink).  protein_id AT4G29630.1p  transcript_id AT4G29630.1  protein_id AT4G29630.1p  transcript_id AT4G29630.1  
At4g29640	chr4:014525830	0.0	W/14525830-14526870	AT4G29640.1  CDS  gene_syn T16L4.150, T16L4_150  go_process cytidine metabolic process|GO:0046087||IEA  go_function catalytic activity|GO:0003824||IEA  go_function cytidine deaminase activity|GO:0004126||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process cytidine deamination|GO:0009972||ISS  go_function cytidine deaminase activity|GO:0004126||ISS  product cytidine deaminase, putative / cytidine aminohydrolase, putative  note cytidine deaminase, putative / cytidine aminohydrolase, putative; FUNCTIONS IN: hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding; INVOLVED IN: cytidine deamination, cytidine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytidine deaminase, homodimeric (InterPro:IPR006263), APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), Cytidine deaminase-like (InterPro:IPR016193), Cytidine and deoxycytidylate deaminase, zinc-binding region (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: cytidine deaminase, putative / cytidine aminohydrolase, putative (TAIR:AT4G29610.1); Has 629 Blast hits to 629 proteins in 257 species: Archae - 0; Bacteria - 500; Metazoa - 0; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT4G29640.1p  transcript_id AT4G29640.1  protein_id AT4G29640.1p  transcript_id AT4G29640.1  
At4g29650	chr4:014528587	0.0	W/14528587-14529342	AT4G29650.1  CDS  gene_syn T16L4.160, T16L4_160  go_function catalytic activity|GO:0003824||IEA  go_function cytidine deaminase activity|GO:0004126||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process pyrimidine salvage|GO:0008655||ISS  go_function cytidine deaminase activity|GO:0004126||ISS  product cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolase  note cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolase; FUNCTIONS IN: cytidine deaminase activity, catalytic activity, zinc ion binding; INVOLVED IN: pyrimidine salvage; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytidine deaminase-like (InterPro:IPR016193), Cytidine and deoxycytidylate deaminase, zinc-binding region (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: cytidine deaminase, putative / cytidine aminohydrolase, putative (TAIR:AT4G29610.1); Has 567 Blast hits to 567 proteins in 240 species: Archae - 0; Bacteria - 470; Metazoa - 0; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT4G29650.1p  transcript_id AT4G29650.1  protein_id AT4G29650.1p  transcript_id AT4G29650.1  
At4g29654	chr4:014532426	0.0	C/14532426-14532454,14532143-14532214,14531912-14532051,14531601-14531836	AT4G29654.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: TMK1 (TRANSMEMBRANE KINASE 1); transmembrane receptor protein serine/threonine kinase (TAIR:AT1G66150.1).  protein_id AT4G29654.1p  transcript_id AT4G29654.1  protein_id AT4G29654.1p  transcript_id AT4G29654.1  
At4g29658	chr4:014533447	0.0	C/14533447-14533830	AT4G29658.1  CDS  gene_syn PRA1.C, PRENYLATED RAB ACCEPTOR 1.C  gene PRA1.C  go_component endoplasmic reticulum|GO:0005783|18583532|IDA  go_process vesicle-mediated transport|GO:0016192|18583532|IDA  product PRA1.C (PRENYLATED RAB ACCEPTOR 1.C)  note PRENYLATED RAB ACCEPTOR 1.C (PRA1.C); INVOLVED IN: vesicle-mediated transport; LOCATED IN: endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: PRA8 (TAIR:AT3G13720.1); Has 164 Blast hits to 164 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 162; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G29658.1p  transcript_id AT4G29658.1  protein_id AT4G29658.1p  transcript_id AT4G29658.1  
At4g29660	chr4:014534980	0.0	C/14534980-14535171,14534495-14534614	AT4G29660.1  CDS  gene_syn EMB2752, EMBRYO DEFECTIVE 2752, T16L4.170, T16L4_170  gene EMB2752  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product EMB2752 (EMBRYO DEFECTIVE 2752)  note EMBRYO DEFECTIVE 2752 (EMB2752); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 17 Blast hits to 17 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G29660.1p  transcript_id AT4G29660.1  protein_id AT4G29660.1p  transcript_id AT4G29660.1  
At4g29670	chr4:014536857	0.0	C/14536857-14537108,14536376-14536555,14535983-14536261	AT4G29670.2  CDS  gene_syn ACHT2, ATYPICAL CYS HIS RICH THIOREDOXIN 2, T16L4.180, T16L4_180  gene ACHT2  function Encodes a member of the thioredoxin family protein. Located in the chloroplast. Shows high activity towards the chloroplast 2-Cys peroxiredoxin A, and poor activity towards the chloroplast NADP-malate dehydrogenase.  go_component chloroplast|GO:0009507|18431481|IDA  go_process cell redox homeostasis|GO:0045454||IEA  go_component chloroplast|GO:0009507|19109414|IDA  go_function oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor|GO:0016671|19109414|IDA  product thioredoxin family protein  note ATYPICAL CYS HIS RICH THIOREDOXIN 2 (ACHT2); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ACHT1 (ATYPICAL CYS HIS RICH THIOREDOXIN 1); oxidoreductase, acting on sulfur group of donors, disulfide as acceptor (TAIR:AT4G26160.1); Has 3564 Blast hits to 3557 proteins in 722 species: Archae - 39; Bacteria - 994; Metazoa - 742; Fungi - 375; Plants - 634; Viruses - 3; Other Eukaryotes - 777 (source: NCBI BLink).  protein_id AT4G29670.2p  transcript_id AT4G29670.2  protein_id AT4G29670.2p  transcript_id AT4G29670.2  
At4g29670	chr4:014536857	0.0	C/14536857-14537108,14536376-14536555,14536097-14536261,14535772-14535882	AT4G29670.1  CDS  gene_syn ACHT2, ATYPICAL CYS HIS RICH THIOREDOXIN 2, T16L4.180, T16L4_180  gene ACHT2  function Encodes a member of the thioredoxin family protein. Located in the chloroplast. Shows high activity towards the chloroplast 2-Cys peroxiredoxin A, and poor activity towards the chloroplast NADP-malate dehydrogenase.  go_component chloroplast|GO:0009507|18431481|IDA  go_process cell redox homeostasis|GO:0045454||IEA  go_component chloroplast|GO:0009507|19109414|IDA  go_function oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor|GO:0016671|19109414|IDA  product thioredoxin family protein  note ATYPICAL CYS HIS RICH THIOREDOXIN 2 (ACHT2); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336), Thioredoxin, conserved site (InterPro:IPR017937); BEST Arabidopsis thaliana protein match is: ACHT1 (ATYPICAL CYS HIS RICH THIOREDOXIN 1); oxidoreductase, acting on sulfur group of donors, disulfide as acceptor (TAIR:AT4G26160.1); Has 3635 Blast hits to 3628 proteins in 736 species: Archae - 41; Bacteria - 1030; Metazoa - 737; Fungi - 360; Plants - 637; Viruses - 3; Other Eukaryotes - 827 (source: NCBI BLink).  protein_id AT4G29670.1p  transcript_id AT4G29670.1  protein_id AT4G29670.1p  transcript_id AT4G29670.1  
At4g29680	chr4:014538067	0.0	C/14538067-14539557	AT4G29680.1  CDS  gene_syn T16L4.190, T16L4_190  go_component vacuole|GO:0005773|15539469|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_process nucleotide metabolic process|GO:0009117||ISS  go_function hydrolase activity|GO:0016787||ISS  product type I phosphodiesterase/nucleotide pyrophosphatase family protein  note type I phosphodiesterase/nucleotide pyrophosphatase family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process, nucleotide metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alkaline phosphatase-like, alpha/beta/alpha (InterPro:IPR017849), Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase (InterPro:IPR002591), Alkaline-phosphatase-like, core domain (InterPro:IPR017850); BEST Arabidopsis thaliana protein match is: type I phosphodiesterase/nucleotide pyrophosphatase family protein (TAIR:AT4G29690.1); Has 1684 Blast hits to 1673 proteins in 343 species: Archae - 6; Bacteria - 554; Metazoa - 580; Fungi - 139; Plants - 57; Viruses - 6; Other Eukaryotes - 342 (source: NCBI BLink).  protein_id AT4G29680.1p  transcript_id AT4G29680.1  protein_id AT4G29680.1p  transcript_id AT4G29680.1  
At4g29690	chr4:014541084	0.0	C/14541084-14542457	AT4G29690.1  CDS  gene_syn T16L4.200, T16L4_200  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_process nucleotide metabolic process|GO:0009117||ISS  go_function hydrolase activity|GO:0016787||ISS  product type I phosphodiesterase/nucleotide pyrophosphatase family protein  note type I phosphodiesterase/nucleotide pyrophosphatase family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process, nucleotide metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Alkaline phosphatase-like, alpha/beta/alpha (InterPro:IPR017849), Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase (InterPro:IPR002591), Alkaline-phosphatase-like, core domain (InterPro:IPR017850); BEST Arabidopsis thaliana protein match is: type I phosphodiesterase/nucleotide pyrophosphatase family protein (TAIR:AT4G29700.1); Has 1479 Blast hits to 1467 proteins in 301 species: Archae - 9; Bacteria - 443; Metazoa - 583; Fungi - 94; Plants - 57; Viruses - 6; Other Eukaryotes - 287 (source: NCBI BLink).  protein_id AT4G29690.1p  transcript_id AT4G29690.1  protein_id AT4G29690.1p  transcript_id AT4G29690.1  
At4g29700	chr4:014543739	0.0	C/14543739-14545124	AT4G29700.1  CDS  gene_syn T16L4.210, T16L4_210  go_component vacuole|GO:0005773|15539469|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_process nucleotide metabolic process|GO:0009117||ISS  go_function hydrolase activity|GO:0016787||ISS  product type I phosphodiesterase/nucleotide pyrophosphatase family protein  note type I phosphodiesterase/nucleotide pyrophosphatase family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process, nucleotide metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Alkaline phosphatase-like, alpha/beta/alpha (InterPro:IPR017849), Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase (InterPro:IPR002591), Alkaline-phosphatase-like, core domain (InterPro:IPR017850); BEST Arabidopsis thaliana protein match is: type I phosphodiesterase/nucleotide pyrophosphatase family protein (TAIR:AT4G29690.1); Has 1541 Blast hits to 1531 proteins in 306 species: Archae - 13; Bacteria - 445; Metazoa - 609; Fungi - 120; Plants - 57; Viruses - 6; Other Eukaryotes - 291 (source: NCBI BLink).  protein_id AT4G29700.1p  transcript_id AT4G29700.1  protein_id AT4G29700.1p  transcript_id AT4G29700.1  
At4g29710	chr4:014547001	0.0	C/14547001-14547402	AT4G29710.1  CDS  gene_syn T16L4.220, T16L4_220  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  product phosphodiesterase/nucleotide pyrophosphatase-related  note phosphodiesterase/nucleotide pyrophosphatase-related; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase (InterPro:IPR002591), Alkaline-phosphatase-like, core domain (InterPro:IPR017850); BEST Arabidopsis thaliana protein match is: type I phosphodiesterase/nucleotide pyrophosphatase family protein (TAIR:AT4G29700.1); Has 742 Blast hits to 742 proteins in 148 species: Archae - 0; Bacteria - 95; Metazoa - 472; Fungi - 73; Plants - 57; Viruses - 6; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT4G29710.1p  transcript_id AT4G29710.1  protein_id AT4G29710.1p  transcript_id AT4G29710.1  
At4g29720	chr4:014553456	0.0	C/14553456-14555057	AT4G29720.1  CDS  gene_syn ATPAO5, Polyamine oxidase 5, T16L4.230, T16L4_230  gene ATPAO5  go_component endomembrane system|GO:0012505||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function amine oxidase activity|GO:0008131||ISS  product ATPAO5 (Polyamine oxidase 5); amine oxidase/ electron carrier/ oxidoreductase  note Polyamine oxidase 5 (ATPAO5); FUNCTIONS IN: electron carrier activity, amine oxidase activity, oxidoreductase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937); BEST Arabidopsis thaliana protein match is: LDL3 (LSD1-LIKE3); amine oxidase/ electron carrier/ oxidoreductase (TAIR:AT4G16310.1); Has 2218 Blast hits to 1911 proteins in 307 species: Archae - 0; Bacteria - 461; Metazoa - 888; Fungi - 335; Plants - 243; Viruses - 0; Other Eukaryotes - 291 (source: NCBI BLink).  protein_id AT4G29720.1p  transcript_id AT4G29720.1  protein_id AT4G29720.1p  transcript_id AT4G29720.1  
At4g29730	chr4:014562269	0.0	C/14562269-14562522,14561716-14561776,14561547-14561606,14561386-14561448,14561203-14561268,14561011-14561085,14560814-14560889,14560546-14560741,14560339-14560420,14560175-14560248,14559975-14560086,14559793-14559867,14559643-14559710,14559452-14559551,14559255-14559356	AT4G29730.1  CDS  gene_syn MSI5, NFC5, Nucleosome/chromatin assembly factor group C 5, T16L4.240, T16L4_240  gene NFC5  function cell cycle-related repressor genes encoding WD-repeat proteins.  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NFC5 (Nucleosome/chromatin assembly factor group C 5)  note Nucleosome/chromatin assembly factor group C 5 (NFC5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: FVE; metal ion binding (TAIR:AT2G19520.1); Has 18181 Blast hits to 12680 proteins in 489 species: Archae - 8; Bacteria - 2155; Metazoa - 7904; Fungi - 3950; Plants - 1730; Viruses - 0; Other Eukaryotes - 2434 (source: NCBI BLink).  protein_id AT4G29730.1p  transcript_id AT4G29730.1  protein_id AT4G29730.1p  transcript_id AT4G29730.1  
At4g29735	chr4:014564275	0.0	C/14564275-14564277,14564060-14564160,14563103-14563181,14562962-14563009	AT4G29735.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0197 (InterPro:IPR007915); Has 156 Blast hits to 156 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT4G29735.1p  transcript_id AT4G29735.1  protein_id AT4G29735.1p  transcript_id AT4G29735.1  
At4g29735	chr4:014564275	0.0	C/14564275-14564277,14564060-14564160,14563373-14563438,14563103-14563181,14562962-14563009	AT4G29735.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0197 (InterPro:IPR007915).  protein_id AT4G29735.2p  transcript_id AT4G29735.2  protein_id AT4G29735.2p  transcript_id AT4G29735.2  
At4g29740	chr4:014566351	0.0	W/14566351-14566978,14567353-14567480,14567987-14568244,14568482-14568750,14568841-14569132	AT4G29740.2  CDS  gene_syn ATCKX4, CKX4, CYTOKININ OXIDASE 4, T16L4.250, T16L4_250  gene CKX4  function It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.  go_component endomembrane system|GO:0012505||IEA  go_process cytokinin catabolic process|GO:0009823|11154345|TAS  go_process cytokinin catabolic process|GO:0009823||ISS  go_function amine oxidase activity|GO:0008131|11154345|TAS  go_function cytokinin dehydrogenase activity|GO:0019139|14555694|TAS  go_function cytokinin dehydrogenase activity|GO:0019139||ISS  product CKX4 (CYTOKININ OXIDASE 4); amine oxidase/ cytokinin dehydrogenase  note CYTOKININ OXIDASE 4 (CKX4); FUNCTIONS IN: cytokinin dehydrogenase activity, amine oxidase activity; INVOLVED IN: cytokinin catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cytokinin dehydrogenase 1, FAD and cytokinin binding (InterPro:IPR015345), FAD-binding, type 2 (InterPro:IPR016166), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: CKX2 (CYTOKININ OXIDASE 2); amine oxidase/ cytokinin dehydrogenase (TAIR:AT2G19500.1); Has 2351 Blast hits to 2349 proteins in 468 species: Archae - 28; Bacteria - 1277; Metazoa - 17; Fungi - 653; Plants - 175; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink).  protein_id AT4G29740.2p  transcript_id AT4G29740.2  protein_id AT4G29740.2p  transcript_id AT4G29740.2  
At4g29740	chr4:014566351	0.0	W/14566351-14566978,14567353-14567480,14567987-14568244,14568482-14568754	AT4G29740.1  CDS  gene_syn ATCKX4, CKX4, CYTOKININ OXIDASE 4, T16L4.250, T16L4_250  gene CKX4  function It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.  go_component endomembrane system|GO:0012505||IEA  go_process cytokinin catabolic process|GO:0009823|11154345|TAS  go_process cytokinin catabolic process|GO:0009823||ISS  go_function amine oxidase activity|GO:0008131|11154345|TAS  go_function cytokinin dehydrogenase activity|GO:0019139|14555694|TAS  go_function cytokinin dehydrogenase activity|GO:0019139||ISS  product CKX4 (CYTOKININ OXIDASE 4); amine oxidase/ cytokinin dehydrogenase  note CYTOKININ OXIDASE 4 (CKX4); FUNCTIONS IN: cytokinin dehydrogenase activity, amine oxidase activity; INVOLVED IN: cytokinin catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cytokinin dehydrogenase 1, FAD and cytokinin binding (InterPro:IPR015345), FAD-binding, type 2 (InterPro:IPR016166), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: CKX2 (CYTOKININ OXIDASE 2); amine oxidase/ cytokinin dehydrogenase (TAIR:AT2G19500.1); Has 2345 Blast hits to 2343 proteins in 468 species: Archae - 28; Bacteria - 1277; Metazoa - 17; Fungi - 653; Plants - 170; Viruses - 0; Other Eukaryotes - 200 (source: NCBI BLink).  protein_id AT4G29740.1p  transcript_id AT4G29740.1  protein_id AT4G29740.1p  transcript_id AT4G29740.1  
At4g29750	chr4:014569728	0.0	W/14569728-14570651,14570846-14571176,14571270-14571400,14571489-14571546,14571571-14571848,14571930-14572086,14572182-14572474,14572557-14572616,14572706-14572804	AT4G29750.1  CDS  gene_syn T16L4.260, T16L4_260  go_component chloroplast|GO:0009507||IEA  go_function RNA binding|GO:0003723||IEA  product RNA binding  note RNA binding; FUNCTIONS IN: RNA binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA binding (TAIR:AT3G23070.1); Has 286 Blast hits to 224 proteins in 36 species: Archae - 2; Bacteria - 0; Metazoa - 30; Fungi - 4; Plants - 237; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT4G29750.1p  transcript_id AT4G29750.1  protein_id AT4G29750.1p  transcript_id AT4G29750.1  
At4g29760	chr4:014574114	0.0	W/14574114-14574204,14574307-14574800,14574891-14575148	AT4G29760.1  CDS  gene_syn T16L4.270, T16L4_270  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29770.2); Has 34 Blast hits to 34 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G29760.1p  transcript_id AT4G29760.1  protein_id AT4G29760.1p  transcript_id AT4G29760.1  
At4g29770	chr4:014575718	0.0	W/14575718-14575798,14575879-14575940,14576358-14576458,14576630-14577123,14577214-14577465	AT4G29770.2  CDS  gene_syn F27B13.10, F27B13_10  function Target of trans acting-siR480/255.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29760.1).  protein_id AT4G29770.2p  transcript_id AT4G29770.2  protein_id AT4G29770.2p  transcript_id AT4G29770.2  
At4g29770	chr4:014576371	0.0	W/14576371-14576458,14576630-14577123,14577214-14577465	AT4G29770.1  CDS  gene_syn F27B13.10, F27B13_10  function Target of trans acting-siR480/255.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29760.1); Has 20 Blast hits to 20 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G29770.1p  transcript_id AT4G29770.1  protein_id AT4G29770.1p  transcript_id AT4G29770.1  
At4g29780	chr4:014579859	0.0	W/14579859-14581481	AT4G29780.1  CDS  gene_syn F27B13.20, F27B13_20  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12010.1); Has 674 Blast hits to 672 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 420; Fungi - 37; Plants - 217; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G29780.1p  transcript_id AT4G29780.1  protein_id AT4G29780.1p  transcript_id AT4G29780.1  
At4g29790	chr4:014584228	0.0	W/14584228-14584628,14584709-14584961,14585402-14585694,14585907-14586086,14586222-14586968,14587081-14587178,14587280-14587330,14587417-14587505,14587995-14588453,14588576-14588650,14588828-14588898,14588993-14589050,14589175-14589397,14589486-14590123	AT4G29790.1  CDS  gene_syn F27B13.30, F27B13_30  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19390.1); Has 439 Blast hits to 240 proteins in 73 species: Archae - 0; Bacteria - 21; Metazoa - 128; Fungi - 45; Plants - 66; Viruses - 2; Other Eukaryotes - 177 (source: NCBI BLink).  protein_id AT4G29790.1p  transcript_id AT4G29790.1  protein_id AT4G29790.1p  transcript_id AT4G29790.1  
At4g29800	chr4:014591274	0.0	C/14591274-14592536,14590862-14591176	AT4G29800.1  CDS  gene_syn F27B13.40, F27B13_40, PATATIN-LIKE PROTEIN 8, PLA IVD, PLP8  gene PLP8  go_process lipid metabolic process|GO:0006629||IEA  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  product PLP8 (PATATIN-LIKE PROTEIN 8)  note PATATIN-LIKE PROTEIN 8 (PLP8); INVOLVED IN: metabolic process, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: PLA IIIA (PATATIN-LIKE PROTEIN 6) (TAIR:AT3G54950.1); Has 702 Blast hits to 701 proteins in 140 species: Archae - 0; Bacteria - 198; Metazoa - 31; Fungi - 32; Plants - 343; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT4G29800.1p  transcript_id AT4G29800.1  protein_id AT4G29800.1p  transcript_id AT4G29800.1  
At4g29810	chr4:014595165	0.0	C/14595165-14595241,14594965-14595049,14594575-14594709,14594208-14594432,14593941-14594123,14593624-14593847,14593494-14593539,14593299-14593415	AT4G29810.1  CDS  gene_syn ARABIDOPSIS THALIANA MAP KINASE KINASE 2, ATMKK2, F27B13.50, F27B13_50, MAP KINASE KINASE 1, MAP KINASE KINASE 2, MK1, MKK2  gene ATMKK2  function encodes a MAP kinase kinase 2 that regulates MPK6 and MPK4 in response to cold and salt stresses. Co-expression with MEKK1 in protoplasts activated MKK2 activity, suggesting that MEKK1 may be a regulator of MKK2.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process MAPKKK cascade|GO:0000165|12119167|IC  go_process MAPKKK cascade|GO:0000165|9878570|IGI  go_process response to cold|GO:0009409|15225555|IDA  go_process response to cold|GO:0009409|15225555|IMP  go_process cold acclimation|GO:0009631|15225555|IMP  go_process response to salt stress|GO:0009651|15225555|IDA  go_process response to salt stress|GO:0009651|15225555|IGI  go_process response to salt stress|GO:0009651|15225555|IMP  go_process defense response, incompatible interaction|GO:0009814|18599650|IGI  go_function MAP kinase kinase activity|GO:0004708|12119167|TAS  go_function MAP kinase kinase activity|GO:0004708|15225555|IDA  go_function MAP kinase kinase activity|GO:0004708|9878570|ISS  go_function kinase activity|GO:0016301||ISS  product ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2); MAP kinase kinase/ kinase  note ARABIDOPSIS THALIANA MAP KINASE KINASE 2 (ATMKK2); FUNCTIONS IN: MAP kinase kinase activity, kinase activity; INVOLVED IN: cold acclimation, response to salt stress, MAPKKK cascade, response to cold, defense response, incompatible interaction; LOCATED IN: plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: MEK1 (MAP KINASE/ ERK KINASE 1); MAP kinase kinase/ kinase/ protein binding (TAIR:AT4G26070.3); Has 95891 Blast hits to 94256 proteins in 2951 species: Archae - 74; Bacteria - 8498; Metazoa - 41488; Fungi - 8639; Plants - 18715; Viruses - 479; Other Eukaryotes - 17998 (source: NCBI BLink).  protein_id AT4G29810.1p  transcript_id AT4G29810.1  protein_id AT4G29810.1p  transcript_id AT4G29810.1  
At4g29810	chr4:014595165	0.0	C/14595165-14595241,14594965-14595076,14594575-14594709,14594208-14594432,14593941-14594123,14593624-14593847,14593479-14593539	AT4G29810.3  CDS  gene_syn ARABIDOPSIS THALIANA MAP KINASE KINASE 2, ATMKK2, F27B13.50, F27B13_50, MAP KINASE KINASE 1, MAP KINASE KINASE 2, MK1, MKK2  gene ATMKK2  function encodes a MAP kinase kinase 2 that regulates MPK6 and MPK4 in response to cold and salt stresses. Co-expression with MEKK1 in protoplasts activated MKK2 activity, suggesting that MEKK1 may be a regulator of MKK2.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process MAPKKK cascade|GO:0000165|12119167|IC  go_process MAPKKK cascade|GO:0000165|9878570|IGI  go_process response to cold|GO:0009409|15225555|IDA  go_process response to cold|GO:0009409|15225555|IMP  go_process cold acclimation|GO:0009631|15225555|IMP  go_process response to salt stress|GO:0009651|15225555|IDA  go_process response to salt stress|GO:0009651|15225555|IGI  go_process response to salt stress|GO:0009651|15225555|IMP  go_process defense response, incompatible interaction|GO:0009814|18599650|IGI  go_function MAP kinase kinase activity|GO:0004708|12119167|TAS  go_function MAP kinase kinase activity|GO:0004708|15225555|IDA  go_function MAP kinase kinase activity|GO:0004708|9878570|ISS  go_function kinase activity|GO:0016301||ISS  product ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2); MAP kinase kinase/ kinase  note ARABIDOPSIS THALIANA MAP KINASE KINASE 2 (ATMKK2); FUNCTIONS IN: MAP kinase kinase activity, kinase activity; INVOLVED IN: cold acclimation, response to salt stress, MAPKKK cascade, response to cold, defense response, incompatible interaction; LOCATED IN: plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: MEK1 (MAP KINASE/ ERK KINASE 1); MAP kinase kinase/ kinase/ protein binding (TAIR:AT4G26070.3); Has 95919 Blast hits to 94477 proteins in 2939 species: Archae - 74; Bacteria - 8555; Metazoa - 41494; Fungi - 8628; Plants - 18806; Viruses - 478; Other Eukaryotes - 17884 (source: NCBI BLink).  protein_id AT4G29810.3p  transcript_id AT4G29810.3  protein_id AT4G29810.3p  transcript_id AT4G29810.3  
At4g29810	chr4:014595165	0.0	C/14595165-14595241,14594965-14595076,14594575-14594709,14594208-14594432,14593941-14594123,14593624-14593847,14593494-14593539,14593299-14593415	AT4G29810.2  CDS  gene_syn ARABIDOPSIS THALIANA MAP KINASE KINASE 2, ATMKK2, F27B13.50, F27B13_50, MAP KINASE KINASE 1, MAP KINASE KINASE 2, MK1, MKK2  gene ATMKK2  function encodes a MAP kinase kinase 2 that regulates MPK6 and MPK4 in response to cold and salt stresses. Co-expression with MEKK1 in protoplasts activated MKK2 activity, suggesting that MEKK1 may be a regulator of MKK2.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process MAPKKK cascade|GO:0000165|12119167|IC  go_process MAPKKK cascade|GO:0000165|9878570|IGI  go_process response to cold|GO:0009409|15225555|IDA  go_process response to cold|GO:0009409|15225555|IMP  go_process cold acclimation|GO:0009631|15225555|IMP  go_process response to salt stress|GO:0009651|15225555|IDA  go_process response to salt stress|GO:0009651|15225555|IGI  go_process response to salt stress|GO:0009651|15225555|IMP  go_process defense response, incompatible interaction|GO:0009814|18599650|IGI  go_function MAP kinase kinase activity|GO:0004708|12119167|TAS  go_function MAP kinase kinase activity|GO:0004708|15225555|IDA  go_function MAP kinase kinase activity|GO:0004708|9878570|ISS  go_function kinase activity|GO:0016301||ISS  product ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2); MAP kinase kinase/ kinase  note ARABIDOPSIS THALIANA MAP KINASE KINASE 2 (ATMKK2); FUNCTIONS IN: MAP kinase kinase activity, kinase activity; INVOLVED IN: cold acclimation, response to salt stress, MAPKKK cascade, response to cold, defense response, incompatible interaction; LOCATED IN: plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: MEK1 (MAP KINASE/ ERK KINASE 1); MAP kinase kinase/ kinase/ protein binding (TAIR:AT4G26070.3); Has 95903 Blast hits to 94264 proteins in 2951 species: Archae - 74; Bacteria - 8498; Metazoa - 41487; Fungi - 8639; Plants - 18716; Viruses - 479; Other Eukaryotes - 18010 (source: NCBI BLink).  protein_id AT4G29810.2p  transcript_id AT4G29810.2  protein_id AT4G29810.2p  transcript_id AT4G29810.2  
At4g29820	chr4:014597133	0.0	C/14597133-14597317,14596996-14597041,14596802-14596895,14596638-14596711,14596463-14596549,14596252-14596362,14596047-14596118	AT4G29820.1  CDS  gene_syn ARABIDOPSIS HOMOLOG OF CFIM-25, ATCFIM-25, CFIM-25, F27B13.60, F27B13_60  gene CFIM-25  function Encodes a homolog of the protein CFI-25, a polyadenylation factor subunit.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product CFIM-25  note CFIM-25; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cleavage and polyadenylation specificity factor, 25 kDa subunit (InterPro:IPR016706); BEST Arabidopsis thaliana protein match is: protein binding (TAIR:AT4G25550.1); Has 288 Blast hits to 286 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 136; Fungi - 53; Plants - 42; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT4G29820.1p  transcript_id AT4G29820.1  protein_id AT4G29820.1p  transcript_id AT4G29820.1  
At4g29830	chr4:014597728	0.0	W/14597728-14598066,14598531-14599157	AT4G29830.1  CDS  gene_syn F27B13.70, F27B13_70, VIP3, vernalization independence 3  gene VIP3  function The protein is composed of repeats of WD motif which is involved in protein complex formation. The gene is involved in flower timing and flower development. This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase. Loss of gene function leads to a redistribution of H3K4me3 and K3K36me2 modifications within genes but not a change in the overall abundance of these modifications within chromatin.  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|IPI  go_process negative regulation of flower development|GO:0009910|12750345|IGI  go_process negative regulation of flower development|GO:0009910|12750345|IMP  go_process histone H3-K36 methylation|GO:0010452|18725930|IMP  go_process histone H3-K4 methylation|GO:0051568|18725930|IMP  go_function nucleotide binding|GO:0000166||ISS  go_function protein binding|GO:0005515|18223036|IPI  product VIP3 (vernalization independence 3); nucleotide binding / protein binding  note vernalization independence 3 (VIP3); FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: histone H3-K4 methylation, histone H3-K36 methylation, negative regulation of flower development; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G49660.1); Has 60205 Blast hits to 24824 proteins in 647 species: Archae - 74; Bacteria - 6488; Metazoa - 27660; Fungi - 12224; Plants - 5634; Viruses - 0; Other Eukaryotes - 8125 (source: NCBI BLink).  protein_id AT4G29830.1p  transcript_id AT4G29830.1  protein_id AT4G29830.1p  transcript_id AT4G29830.1  
At4g29840	chr4:014599434	0.0	C/14599434-14601014	AT4G29840.1  CDS  gene_syn F27B13.80, F27B13_80, METHIONINE OVER-ACCUMULATOR 2, MTO2, THREONINE SYNTHASE, TS  gene MTO2  function threonine synthase  go_component chloroplast|GO:0009507|18431481|IDA  go_process amino acid metabolic process|GO:0006520||IEA  go_process metabolic process|GO:0008152||IEA  go_process threonine biosynthetic process|GO:0009088||IEA  go_process threonine biosynthetic process|GO:0009088||ISS  go_function threonine synthase activity|GO:0004795|16319072|IDA  go_function threonine synthase activity|GO:0004795|9748328|IDA  product MTO2 (METHIONINE OVER-ACCUMULATOR 2); threonine synthase  note METHIONINE OVER-ACCUMULATOR 2 (MTO2); FUNCTIONS IN: threonine synthase activity; INVOLVED IN: amino acid metabolic process, threonine biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Threonine synthase (InterPro:IPR004450), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Serine/threonine dehydratase, pyridoxal-phosphate-binding site (InterPro:IPR000634); BEST Arabidopsis thaliana protein match is: threonine synthase, putative (TAIR:AT1G72810.1); Has 4532 Blast hits to 4532 proteins in 1069 species: Archae - 227; Bacteria - 2218; Metazoa - 86; Fungi - 12; Plants - 54; Viruses - 0; Other Eukaryotes - 1935 (source: NCBI BLink).  protein_id AT4G29840.1p  transcript_id AT4G29840.1  protein_id AT4G29840.1p  transcript_id AT4G29840.1  
At4g29850	chr4:014602685	0.0	C/14602685-14602874,14601818-14601939	AT4G29850.1  CDS  gene_syn F27B13.90, F27B13_90  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0414 (InterPro:IPR008590); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19350.1); Has 188 Blast hits to 188 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 141; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G29850.1p  transcript_id AT4G29850.1  protein_id AT4G29850.1p  transcript_id AT4G29850.1  
At4g29860	chr4:014605601	0.0	C/14605601-14605704,14605434-14605496,14605276-14605347,14605142-14605198,14604854-14605047,14604708-14604766,14604496-14604589,14604275-14604341,14604089-14604171,14603904-14603995,14603701-14603807,14603494-14603557,14603296-14603400	AT4G29860.1  CDS  gene_syn EMB2757, EMBRYO DEFECTIVE 2757, F27B13.100, F27B13_100, TAN, TANMEI  gene EMB2757  function Encodes a WD repeat protein with seven WD repeat motifs, predicted to function in protein-protein interaction. Mutations caused defects in both embryo and seedling development.  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process embryonic development|GO:0009790|16113228|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process acquisition of desiccation tolerance|GO:0048700|16113228|IMP  go_function nucleotide binding|GO:0000166||ISS  product EMB2757 (EMBRYO DEFECTIVE 2757); nucleotide binding  note EMBRYO DEFECTIVE 2757 (EMB2757); FUNCTIONS IN: nucleotide binding; INVOLVED IN: acquisition of desiccation tolerance, embryonic development ending in seed dormancy, embryonic development; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: stem, rosette leaf, fruit, root, cultured cell; EXPRESSED DURING: F mature embryo stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: nucleotide binding (TAIR:AT5G50230.1); Has 17741 Blast hits to 9473 proteins in 469 species: Archae - 38; Bacteria - 4351; Metazoa - 5829; Fungi - 3519; Plants - 1445; Viruses - 0; Other Eukaryotes - 2559 (source: NCBI BLink).  protein_id AT4G29860.1p  transcript_id AT4G29860.1  protein_id AT4G29860.1p  transcript_id AT4G29860.1  
At4g29870	chr4:014606012	0.0	W/14606012-14606530	AT4G29870.1  CDS  gene_syn F27B13.110, F27B13_110  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: membrane protein, putative (TAIR:AT2G19340.2); Has 163 Blast hits to 163 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 127; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT4G29870.1p  transcript_id AT4G29870.1  protein_id AT4G29870.1p  transcript_id AT4G29870.1  
At4g29880	chr4:014608113	0.0	C/14608113-14608379,14607856-14608025,14607078-14607762	AT4G29880.1  CDS  gene_syn F27B13.120, F27B13_120  go_function protein binding|GO:0005515||IEA  go_function protein binding|GO:0005515||ISS  product protein binding  note protein binding; FUNCTIONS IN: protein binding; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT2G19330.1); Has 45513 Blast hits to 20132 proteins in 769 species: Archae - 24; Bacteria - 4422; Metazoa - 23500; Fungi - 1467; Plants - 13209; Viruses - 26; Other Eukaryotes - 2865 (source: NCBI BLink).  protein_id AT4G29880.1p  transcript_id AT4G29880.1  protein_id AT4G29880.1p  transcript_id AT4G29880.1  
At4g29890	chr4:014608868	0.0	W/14608868-14609165,14609244-14609289,14609367-14609502,14609596-14609670,14609749-14609964,14610049-14610144,14610256-14610377,14610458-14610551,14610637-14610687,14610771-14610905	AT4G29890.1  CDS  gene_syn F27B13.130, F27B13_130  go_component chloroplast|GO:0009507||IEA  go_process cellular aromatic compound metabolic process|GO:0006725||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function 2 iron, 2 sulfur cluster binding|GO:0051537||IEA  go_function electron carrier activity|GO:0009055||ISS  product choline monooxygenase, putative (CMO-like)  note choline monooxygenase, putative (CMO-like); FUNCTIONS IN: electron carrier activity, oxidoreductase activity, iron ion binding, 2 iron, 2 sulfur cluster binding; INVOLVED IN: oxidation reduction, cellular aromatic compound metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rieske [2Fe-2S] iron-sulphur domain (InterPro:IPR017941), Rieske [2Fe-2S] region (InterPro:IPR005806), Aromatic-ring-hydroxylating dioxygenase, alpha subunit (InterPro:IPR001663); Has 5848 Blast hits to 5847 proteins in 675 species: Archae - 8; Bacteria - 2955; Metazoa - 12; Fungi - 79; Plants - 64; Viruses - 0; Other Eukaryotes - 2730 (source: NCBI BLink).  protein_id AT4G29890.1p  transcript_id AT4G29890.1  protein_id AT4G29890.1p  transcript_id AT4G29890.1  
At4g29900	chr4:014618632	0.0	C/14618632-14618775,14618295-14618411,14618178-14618217,14617601-14617713,14617367-14617498,14617170-14617259,14616754-14616823,14616600-14616670,14616431-14616514,14616256-14616333,14616099-14616173,14615750-14615833,14615590-14615672,14615397-14615505,14615249-14615304,14615035-14615077,14614847-14614930,14614561-14614698,14614402-14614464,14614221-14614319,14613984-14614094,14613637-14613807,14613460-14613519,14613176-14613340,14612984-14613100,14612794-14612892,14612465-14612602,14612270-14612370,14612114-14612159,14611886-14612014,14611704-14611811,14611517-14611608,14611310-14611404,14611225-14611229	AT4G29900.1  CDS  gene_syn ACA10, ATACA10, AUTOINHIBITED CA(2+)-ATPASE, AUTOINHIBITED CA(2+)-ATPASE 10, CIF1, COMPACT INFLORESCENCE 1, F27B13.140, F27B13_140  gene ACA10  function one of the type IIB calcium pump isoforms. encodes an autoinhibited Ca(2+)-ATPase that contains an N-terminal calmodulin binding autoinhibitory domain.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process inflorescence morphogenesis|GO:0048281|11439140|IGI  go_process shoot development|GO:0048367|11439140|IGI  go_component plasma membrane|GO:0005886|16618929|IDA  go_function calcium-transporting ATPase activity|GO:0005388|10748247|ISS  go_function calcium-transporting ATPase activity|GO:0005388|12805592|ISS  go_function calcium-transporting ATPase activity|GO:0005388||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  product ACA10 (AUTOINHIBITED CA(2+)-ATPASE 10); calcium-transporting ATPase/ calmodulin binding  note AUTOINHIBITED CA(2+)-ATPASE 10 (ACA10); FUNCTIONS IN: calmodulin binding, calcium-transporting ATPase activity; INVOLVED IN: shoot development, inflorescence morphogenesis; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, calcium-transporting, PMCA-type (InterPro:IPR006408), ATPase, P-type cation exchange, alpha subunit (InterPro:IPR006069), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068); BEST Arabidopsis thaliana protein match is: ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8); calcium-transporting ATPase/ calmodulin binding / protein self-association (TAIR:AT5G57110.2); Has 26011 Blast hits to 19725 proteins in 1840 species: Archae - 541; Bacteria - 15981; Metazoa - 3482; Fungi - 1705; Plants - 1151; Viruses - 3; Other Eukaryotes - 3148 (source: NCBI BLink).  protein_id AT4G29900.1p  transcript_id AT4G29900.1  protein_id AT4G29900.1p  transcript_id AT4G29900.1  
At4g29905	chr4:014627227	0.0	C/14627227-14627430	AT4G29905.1  CDS  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57123.1); Has 41 Blast hits to 41 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G29905.1p  transcript_id AT4G29905.1  protein_id AT4G29905.1p  transcript_id AT4G29905.1  
At4g29910	chr4:014629235	0.0	C/14629235-14630055,14628732-14629145,14628308-14628626,14628154-14628204	AT4G29910.1  CDS  gene_syn ATORC5, F27B13.150, F27B13_150, ORC5, ORIGIN RECOGNITION COMPLEX PROTEIN 5, ORIGIN RECOGNITION COMPLEX SUBUNIT 5  gene ORC5  function Origin Recognition Complex subunit 5. Involved in the initiation of DNA replication. Interacts strongly with all ORC subunits.  go_component origin recognition complex|GO:0000808|16179646|ISS  go_process DNA replication|GO:0006260|16179646|ISS  go_function protein binding|GO:0005515|16179646|IPI  product ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5); protein binding  note ORIGIN RECOGNITION COMPLEX PROTEIN 5 (ORC5); FUNCTIONS IN: protein binding; INVOLVED IN: DNA replication; LOCATED IN: origin recognition complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 218 Blast hits to 218 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 67; Plants - 20; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT4G29910.1p  transcript_id AT4G29910.1  protein_id AT4G29910.1p  transcript_id AT4G29910.1  
At4g29920	chr4:014634561	0.0	C/14634561-14635885,14634260-14634476,14632653-14634164	AT4G29920.1  CDS  gene_syn F27B13.160, F27B13_160  go_component chloroplast|GO:0009507|15028209|IDA  go_process protein metabolic process|GO:0019538||IEA  go_function protein binding|GO:0005515||IEA  product heat shock protein-related  note heat shock protein-related; FUNCTIONS IN: protein binding; INVOLVED IN: protein metabolic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: protein binding (TAIR:AT5G57130.1); Has 1175 Blast hits to 1147 proteins in 370 species: Archae - 7; Bacteria - 714; Metazoa - 28; Fungi - 22; Plants - 186; Viruses - 0; Other Eukaryotes - 218 (source: NCBI BLink).  protein_id AT4G29920.1p  transcript_id AT4G29920.1  protein_id AT4G29920.1p  transcript_id AT4G29920.1  
At4g29930	chr4:014644108	0.0	W/14644108-14644187,14644310-14644475,14644860-14644982,14645070-14645117,14645218-14645388,14647360-14647449	AT4G29930.2  CDS  gene_syn F27B13.170, F27B13_170  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT5G57150.1); Has 1313 Blast hits to 1313 proteins in 184 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 0; Plants - 1176; Viruses - 20; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G29930.2p  transcript_id AT4G29930.2  protein_id AT4G29930.2p  transcript_id AT4G29930.2  
At4g29930	chr4:014644108	0.0	W/14644108-14644187,14644310-14644475,14644860-14645117,14645218-14645388,14647360-14647449	AT4G29930.1  CDS  gene_syn F27B13.170, F27B13_170  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT5G57150.1); Has 1230 Blast hits to 1230 proteins in 112 species: Archae - 0; Bacteria - 2; Metazoa - 45; Fungi - 0; Plants - 1172; Viruses - 9; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G29930.1p  transcript_id AT4G29930.1  protein_id AT4G29930.1p  transcript_id AT4G29930.1  
At4g29930	chr4:014644108	0.0	W/14644108-14644187,14644310-14644475,14644860-14645117,14645218-14645505	AT4G29930.3  CDS  gene_syn F27B13.170, F27B13_170  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT5G57150.2); Has 1242 Blast hits to 1242 proteins in 112 species: Archae - 0; Bacteria - 1; Metazoa - 58; Fungi - 0; Plants - 1172; Viruses - 9; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G29930.3p  transcript_id AT4G29930.3  protein_id AT4G29930.3p  transcript_id AT4G29930.3  
At4g29930	chr4:014644108	0.0	W/14644108-14644187,14644310-14644475,14644860-14645168	AT4G29930.4  CDS  gene_syn F27B13.170, F27B13_170  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT5G57150.1); Has 1195 Blast hits to 1195 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 0; Plants - 1136; Viruses - 9; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G29930.4p  transcript_id AT4G29930.4  protein_id AT4G29930.4p  transcript_id AT4G29930.4  
At4g29940	chr4:014652307	0.0	C/14652307-14652710,14651714-14651879,14651501-14651624,14651274-14651386,14650804-14651148,14650451-14650696,14650238-14650327,14650039-14650089,14649651-14649923,14649468-14649548,14649235-14649315,14648993-14649073,14648755-14648835,14648346-14648600	AT4G29940.1  CDS  gene_syn F27B13.180, F27B13_180, HOMEODOMAIN PROTEIN, PATHOGENESIS RELATED HOMEODOMAIN PROTEIN A, PRHA  gene PRHA  function Homeodomain protein (PRHA). Expression of the gene differs in various vegetative and floral plant tissues and is positively influenced by the phytohormone auxin. It is often associated with regions of developing vascular tissue. The prha promoter is highly responsive to the synthetic auxin, naphthalene acetic acid, in transient assays using tobacco protoplasts. The PRHA protein has the capacity to bind to TAATTG core sequence elements but requires additional adjacent bases for high-affinity binding.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to auxin stimulus|GO:0009733|9351248|IEP  go_process positive regulation of transcription|GO:0045941|10982874|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein binding|GO:0005515|9681033|IPI  go_function transcription activator activity|GO:0016563|10982874|IDA  go_function sequence-specific DNA binding|GO:0043565|9351248|IDA  product PRHA (PATHOGENESIS RELATED HOMEODOMAIN PROTEIN A); protein binding / sequence-specific DNA binding / transcription activator/ transcription factor  note PATHOGENESIS RELATED HOMEODOMAIN PROTEIN A (PRHA); FUNCTIONS IN: protein binding, transcription factor activity, sequence-specific DNA binding, transcription activator activity; INVOLVED IN: response to auxin stimulus, positive regulation of transcription, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: HAT3.1; DNA binding / sequence-specific DNA binding / transcription activator/ transcription factor (TAIR:AT3G19510.1); Has 18254 Blast hits to 11638 proteins in 740 species: Archae - 62; Bacteria - 1266; Metazoa - 7786; Fungi - 1353; Plants - 556; Viruses - 182; Other Eukaryotes - 7049 (source: NCBI BLink).  protein_id AT4G29940.1p  transcript_id AT4G29940.1  protein_id AT4G29940.1p  transcript_id AT4G29940.1  
At4g29950	chr4:014657464	0.0	W/14657464-14657618,14657784-14657887,14657972-14658148,14658234-14660128,14660215-14660370	AT4G29950.1  CDS  go_component intracellular|GO:0005622||IEA  go_process regulation of Rab GTPase activity|GO:0032313||IEA  go_function RAB GTPase activator activity|GO:0005097||IEA  product microtubule-associated protein  note microtubule-associated protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: RabGAP/TBC domain-containing protein (TAIR:AT2G19240.1); Has 1492 Blast hits to 1181 proteins in 174 species: Archae - 0; Bacteria - 52; Metazoa - 711; Fungi - 232; Plants - 131; Viruses - 6; Other Eukaryotes - 360 (source: NCBI BLink).  protein_id AT4G29950.1p  transcript_id AT4G29950.1  protein_id AT4G29950.1p  transcript_id AT4G29950.1  
At4g29950	chr4:014658088	0.0	W/14658088-14658148,14658234-14660128,14660215-14660370	AT4G29950.2  CDS  go_component intracellular|GO:0005622||IEA  go_process regulation of Rab GTPase activity|GO:0032313||IEA  go_function RAB GTPase activator activity|GO:0005097||IEA  product microtubule-associated protein  note microtubule-associated protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: RabGAP/TBC domain-containing protein (TAIR:AT2G19240.1); Has 1079 Blast hits to 929 proteins in 170 species: Archae - 0; Bacteria - 54; Metazoa - 462; Fungi - 177; Plants - 92; Viruses - 6; Other Eukaryotes - 288 (source: NCBI BLink).  protein_id AT4G29950.2p  transcript_id AT4G29950.2  protein_id AT4G29950.2p  transcript_id AT4G29950.2  
At4g29960	chr4:014662185	0.0	C/14662185-14662274,14661880-14662100,14661366-14661602,14661025-14661176,14660753-14660928	AT4G29960.1  CDS  gene_syn F27B13.200, F27B13_200  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 25 Blast hits to 25 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G29960.1p  transcript_id AT4G29960.1  protein_id AT4G29960.1p  transcript_id AT4G29960.1  
At4g29970	chr4:014663557	0.0	C/14663557-14663917,14663310-14663387,14663033-14663237,14662765-14662972	AT4G29970.1  CDS  gene_syn F27B13.210, F27B13_210  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G04660.1); Has 370 Blast hits to 319 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 370; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G29970.1p  transcript_id AT4G29970.1  protein_id AT4G29970.1p  transcript_id AT4G29970.1  
At4g29980	chr4:014665037	0.0	C/14665037-14665546	AT4G29980.1  CDS  gene_syn F6G3.10, F6G3_10  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30800.1); Has 29 Blast hits to 29 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G29980.1p  transcript_id AT4G29980.1  protein_id AT4G29980.1p  transcript_id AT4G29980.1  
At4g29990	chr4:014669363	0.0	C/14669363-14669438,14668735-14669281,14668197-14668672,14667987-14668128,14667826-14667897,14667666-14667737,14667492-14667572,14666944-14667328,14666724-14666850,14666567-14666629,14666298-14666487,14665802-14666201	AT4G29990.1  CDS  gene_syn F6G3.20, F6G3_20  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function ATP binding|GO:0005524||ISS  product light repressible receptor protein kinase  note light repressible receptor protein kinase; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, embryo, root; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: FRK1 (FLG22-INDUCED RECEPTOR-LIKE KINASE 1); kinase (TAIR:AT2G19190.1); Has 117859 Blast hits to 94689 proteins in 3608 species: Archae - 65; Bacteria - 8592; Metazoa - 41158; Fungi - 7424; Plants - 43161; Viruses - 429; Other Eukaryotes - 17030 (source: NCBI BLink).  protein_id AT4G29990.1p  transcript_id AT4G29990.1  protein_id AT4G29990.1p  transcript_id AT4G29990.1  
At4g30000	chr4:014672205	0.0	C/14672205-14672397,14670524-14671995	AT4G30000.1  CDS  gene_syn F6G3.30, F6G3_30  go_process folic acid and derivative biosynthetic process|GO:0009396||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_function 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity|GO:0003848||IEA  go_function dihydropteroate synthase activity|GO:0004156||IEA  go_process folic acid and derivative biosynthetic process|GO:0009396||ISS  go_function dihydropteroate synthase activity|GO:0004156||ISS  product dihydropterin pyrophosphokinase, putative / dihydropteroate synthase, putative / DHPS, putative  note dihydropterin pyrophosphokinase, putative / dihydropteroate synthase, putative / DHPS, putative; FUNCTIONS IN: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity, dihydropteroate synthase activity; INVOLVED IN: cellular metabolic process, folic acid and derivative biosynthetic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dihydropteroate synthase-like (InterPro:IPR011005), 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK (InterPro:IPR000550), Dihydropteroate synthase (InterPro:IPR006390), Dihydropteroate synthase, DHPS (InterPro:IPR000489); BEST Arabidopsis thaliana protein match is: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase/ dihydropteroate synthase (TAIR:AT1G69190.1); Has 10336 Blast hits to 10321 proteins in 1412 species: Archae - 96; Bacteria - 5346; Metazoa - 10; Fungi - 111; Plants - 33; Viruses - 0; Other Eukaryotes - 4740 (source: NCBI BLink).  protein_id AT4G30000.1p  transcript_id AT4G30000.1  protein_id AT4G30000.1p  transcript_id AT4G30000.1  
At4g30010	chr4:014672947	0.0	W/14672947-14673219	AT4G30010.1  CDS  gene_syn F6G3.40, F6G3_40  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; Has 26 Blast hits to 26 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G30010.1p  transcript_id AT4G30010.1  protein_id AT4G30010.1p  transcript_id AT4G30010.1  
At4g30020	chr4:014678251	0.0	W/14678251-14678417,14678593-14678737,14678823-14679220,14679326-14679421,14679507-14679579,14679759-14680044,14680172-14680497,14680585-14680852,14680939-14681220,14681353-14681762	AT4G30020.1  CDS  gene_syn F6G3.50, F6G3_50  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product subtilase family protein  note subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system, cell wall, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8A, DUF1034 C-terminal (InterPro:IPR010435), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: SLP3; serine-type peptidase (TAIR:AT2G19170.1); Has 5038 Blast hits to 4287 proteins in 743 species: Archae - 119; Bacteria - 2971; Metazoa - 70; Fungi - 308; Plants - 867; Viruses - 0; Other Eukaryotes - 703 (source: NCBI BLink).  protein_id AT4G30020.1p  transcript_id AT4G30020.1  protein_id AT4G30020.1p  transcript_id AT4G30020.1  
At4g30030	chr4:014682210	0.0	C/14682210-14683484	AT4G30030.1  CDS  gene_syn F6G3.60, F6G3_60  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: aspartyl protease family (TAIR:AT4G30040.1); Has 1231 Blast hits to 1221 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 96; Plants - 1005; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT4G30030.1p  transcript_id AT4G30030.1  protein_id AT4G30030.1p  transcript_id AT4G30030.1  
At4g30040	chr4:014685602	0.0	W/14685602-14686885	AT4G30040.1  CDS  gene_syn F6G3.70, F6G3_70  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family  note aspartyl protease family; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT4G30030.1); Has 1075 Blast hits to 1064 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 58; Plants - 990; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT4G30040.1p  transcript_id AT4G30040.1  protein_id AT4G30040.1p  transcript_id AT4G30040.1  
At4g30050	chr4:014687206	0.0	C/14687206-14687607	AT4G30050.1  CDS  gene_syn F6G3.80, F6G3_80  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G30050.1p  transcript_id AT4G30050.1  protein_id AT4G30050.1p  transcript_id AT4G30050.1  
At4g30060	chr4:014691127	0.0	C/14691127-14691519,14690911-14691009,14690714-14690814,14690563-14690634,14690375-14690465,14690125-14690205,14689979-14690041,14689776-14689898,14689650-14689688,14689420-14689563	AT4G30060.1  CDS  gene_syn F6G3.90, F6G3_90  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF266, plant (InterPro:IPR004949); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19160.1); Has 337 Blast hits to 337 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 306; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT4G30060.1p  transcript_id AT4G30060.1  protein_id AT4G30060.1p  transcript_id AT4G30060.1  
At4g30064	chr4:014694302	0.0	W/14694302-14694362,14694468-14694643	AT4G30064.1  CDS  gene_syn LCR61, Low-molecular-weight cysteine-rich 61  gene LCR61  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR61 (Low-molecular-weight cysteine-rich 61)  note Low-molecular-weight cysteine-rich 61 (LCR61); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: LCR62 (Low-molecular-weight cysteine-rich 62) (TAIR:AT2G29045.1); Has 28 Blast hits to 28 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G30064.1p  transcript_id AT4G30064.1  protein_id AT4G30064.1p  transcript_id AT4G30064.1  
At4g30067	chr4:014696074	0.0	W/14696074-14696134,14696303-14696478	AT4G30067.1  CDS  gene_syn LCR63, Low-molecular-weight cysteine-rich 63  gene LCR63  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR63 (Low-molecular-weight cysteine-rich 63)  note Low-molecular-weight cysteine-rich 63 (LCR63); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: LCR61 (Low-molecular-weight cysteine-rich 61) (TAIR:AT4G30064.1); Has 23 Blast hits to 23 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G30067.1p  transcript_id AT4G30067.1  protein_id AT4G30067.1p  transcript_id AT4G30067.1  
At4g30070	chr4:014697549	0.0	W/14697549-14697606,14697984-14698315	AT4G30070.1  CDS  gene_syn F6G3.100, F6G3_100, LCR59, Low-molecular-weight cysteine-rich 59  gene LCR59  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952|18674922|ISS  product LCR59 (Low-molecular-weight cysteine-rich 59)  note Low-molecular-weight cysteine-rich 59 (LCR59); INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: embryo; EXPRESSED DURING: C globular stage; BEST Arabidopsis thaliana protein match is: LCR80 (Low-molecular-weight cysteine-rich 80) (TAIR:AT5G38330.1); Has 38 Blast hits to 36 proteins in 5 species: Archae - 4; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G30070.1p  transcript_id AT4G30070.1  protein_id AT4G30070.1p  transcript_id AT4G30070.1  
At4g30072	chr4:014698731	0.0	W/14698731-14699140	AT4G30072.1  pseudogenic_transcript  pseudo  function Encodes a defensin-like (DEFL) family protein.  
At4g30074	chr4:014700503	0.0	C/14700503-14700560,14699844-14700166	AT4G30074.1  CDS  gene_syn LCR19, Low-molecular-weight cysteine-rich 19  gene LCR19  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR19 (Low-molecular-weight cysteine-rich 19)  note Low-molecular-weight cysteine-rich 19 (LCR19); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: LCR59 (Low-molecular-weight cysteine-rich 59) (TAIR:AT4G30070.1); Has 42 Blast hits to 40 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G30074.1p  transcript_id AT4G30074.1  protein_id AT4G30074.1p  transcript_id AT4G30074.1  
At4g30080	chr4:014704479	0.0	C/14704479-14705564,14703547-14704403,14703369-14703438	AT4G30080.1  CDS  gene_syn ARF16, AUXIN RESPONSE FACTOR 16, F6G3.110, F6G3_110  gene ARF16  function Involved in root cap cell differentiation. Gene expression is regulated by mir160.Located in the nucleus.  go_component nucleus|GO:0005634|16006581|IDA  go_process pattern specification process|GO:0007389|16006581|IDA  go_process response to auxin stimulus|GO:0009733|16006581|IEP  go_process root cap development|GO:0048829|16006581|IGI  go_process root cap development|GO:0048829|16006581|IMP  go_process cell division|GO:0051301|16006581|IGI  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function miRNA binding|GO:0035198|15829600|ISS  product ARF16 (AUXIN RESPONSE FACTOR 16); miRNA binding / transcription factor  note AUXIN RESPONSE FACTOR 16 (ARF16); FUNCTIONS IN: transcription factor activity, miRNA binding; INVOLVED IN: response to auxin stimulus, root cap development, cell division, pattern specification process; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: ARF10 (AUXIN RESPONSE FACTOR 10); miRNA binding / transcription factor (TAIR:AT2G28350.1); Has 809 Blast hits to 737 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 4; Plants - 798; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G30080.1p  transcript_id AT4G30080.1  protein_id AT4G30080.1p  transcript_id AT4G30080.1  
At4g30090	chr4:014711450	0.0	C/14711450-14711612,14710842-14710960,14710684-14710746,14710492-14710599,14710362-14710412,14710221-14710283,14710085-14710147,14709846-14710010,14709619-14709774,14709467-14709535,14709314-14709375,14709135-14709219	AT4G30090.1  CDS  gene_syn F6G3.120, F6G3_120, emb1353, embryo defective 1353  gene emb1353  go_component endomembrane system|GO:0012505||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product emb1353 (embryo defective 1353)  note embryo defective 1353 (emb1353); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT4G31340.1); Has 509 Blast hits to 470 proteins in 96 species: Archae - 5; Bacteria - 20; Metazoa - 263; Fungi - 12; Plants - 91; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).  protein_id AT4G30090.1p  transcript_id AT4G30090.1  protein_id AT4G30090.1p  transcript_id AT4G30090.1  
At4g30097	chr4:014713518	0.0	C/14713518-14713661	AT4G30097.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G30097.1p  transcript_id AT4G30097.1  protein_id AT4G30097.1p  transcript_id AT4G30097.1  
At4g30100	chr4:014714191	0.0	W/14714191-14715430,14716138-14716317,14716435-14716530,14716620-14716743,14716868-14717000,14717081-14718844,14718937-14719335	AT4G30100.1  CDS  gene_syn F6G3.130, F6G3_130  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product tRNA-splicing endonuclease positive effector-related  note tRNA-splicing endonuclease positive effector-related; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: tRNA-splicing endonuclease positive effector-related (TAIR:AT2G19120.1); Has 3898 Blast hits to 3709 proteins in 639 species: Archae - 113; Bacteria - 873; Metazoa - 1108; Fungi - 621; Plants - 299; Viruses - 139; Other Eukaryotes - 745 (source: NCBI BLink).  protein_id AT4G30100.1p  transcript_id AT4G30100.1  protein_id AT4G30100.1p  transcript_id AT4G30100.1  
At4g30110	chr4:014724394	0.0	C/14724394-14724577,14723659-14723916,14723088-14723185,14722752-14723007,14722529-14722666,14722116-14722443,14721820-14722022,14721536-14721738,14720253-14721440	AT4G30110.1  CDS  gene_syn F6G3.140, F6G3_140, HMA2  gene HMA2  function encodes a protein similar to Zn-ATPase, a P1B-type ATPases transport zinc  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process ATP biosynthetic process|GO:0006754||IEA  go_process metabolic process|GO:0008152||IEA  go_process metal ion transport|GO:0030001||IEA  go_function cadmium-transporting ATPase activity|GO:0015434||ISS  product HMA2; cadmium-transporting ATPase  note HMA2; FUNCTIONS IN: cadmium-transporting ATPase activity; INVOLVED IN: metabolic process, ATP biosynthetic process, metal ion transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121), ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating (InterPro:IPR006404), Heavy-metal-associated, conserved site (InterPro:IPR017969), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, heavy metal translocating (InterPro:IPR006416), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: HMA4; cadmium ion transmembrane transporter/ cadmium-transporting ATPase/ zinc ion transmembrane transporter (TAIR:AT2G19110.1); Has 22715 Blast hits to 17948 proteins in 1842 species: Archae - 516; Bacteria - 12861; Metazoa - 3478; Fungi - 1636; Plants - 1220; Viruses - 5; Other Eukaryotes - 2999 (source: NCBI BLink).  protein_id AT4G30110.1p  transcript_id AT4G30110.1  protein_id AT4G30110.1p  transcript_id AT4G30110.1  
At4g30120	chr4:014733301	0.0	C/14733301-14733502,14732895-14733152,14732709-14732806,14732322-14732577,14732100-14732237,14731687-14732014,14731385-14731587,14731131-14731276	AT4G30120.1  CDS  gene_syn A. THALIANA HEAVY METAL ATPASE 3, ATHMA3, F6G3.150, F6G3_150, HEAVY METAL ATPASE 3, HMA3  gene HMA3  function encodes a protein similar to Zn-ATPase, a P1B-type ATPases transport zinc  go_component membrane|GO:0016020||IEA  go_process ATP biosynthetic process|GO:0006754||IEA  go_process metal ion transport|GO:0030001||IEA  go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662||ISS  product HMA3 (HEAVY METAL ATPASE 3); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism  note HEAVY METAL ATPASE 3 (HMA3); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: ATP biosynthetic process, metal ion transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121), ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: HMA4; cadmium ion transmembrane transporter/ cadmium-transporting ATPase/ zinc ion transmembrane transporter (TAIR:AT2G19110.1); Has 15349 Blast hits to 15341 proteins in 1717 species: Archae - 387; Bacteria - 10214; Metazoa - 1411; Fungi - 863; Plants - 691; Viruses - 3; Other Eukaryotes - 1780 (source: NCBI BLink).  protein_id AT4G30120.1p  transcript_id AT4G30120.1  protein_id AT4G30120.1p  transcript_id AT4G30120.1  
At4g30130	chr4:014735401	0.0	W/14735401-14736433,14736507-14736727,14736800-14737023,14737094-14737793	AT4G30130.1  CDS  gene_syn F6G3.160, F6G3_160  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19090.1); Has 301 Blast hits to 242 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 2; Plants - 287; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G30130.1p  transcript_id AT4G30130.1  protein_id AT4G30130.1p  transcript_id AT4G30130.1  
At4g30140	chr4:014740299	0.0	C/14740299-14740548,14739541-14739665,14739246-14739470,14738880-14739120,14738603-14738808	AT4G30140.1  CDS  gene_syn F6G3.170, F6G3_170  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT2G19050.1); Has 1641 Blast hits to 1626 proteins in 101 species: Archae - 0; Bacteria - 110; Metazoa - 1; Fungi - 4; Plants - 1518; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT4G30140.1p  transcript_id AT4G30140.1  protein_id AT4G30140.1p  transcript_id AT4G30140.1  
At4g30150	chr4:014742452	0.0	W/14742452-14742789,14742949-14744566,14744678-14746057,14746155-14746477,14746603-14748101,14748289-14748733,14748835-14748988,14749189-14749292,14749476-14749567,14749688-14749764	AT4G30150.1  CDS  gene_syn F6G3.180, F6G3_180  product unknown protein  note EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Nucleolar 27S pre-rRNA processing, Urb2/Npa2 (InterPro:IPR018849); Has 31 Blast hits to 27 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 19; Viruses - 3; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G30150.1p  transcript_id AT4G30150.1  protein_id AT4G30150.1p  transcript_id AT4G30150.1  
At4g30160	chr4:014754528	0.0	W/14754528-14754583,14754684-14754783,14754870-14754938,14755033-14755269,14755345-14755522,14755609-14755741,14755822-14755984,14756072-14756219,14756315-14756571,14756682-14756750,14756840-14756908,14757039-14757176,14757261-14757389,14757522-14757669,14757778-14757788,14757905-14758045,14758165-14758293,14758390-14758455,14758560-14758893,14759071-14759306,14759398-14759511	AT4G30160.1  CDS  gene_syn ARABIDOPSIS THALIANA VILLIN 4, ATVLN4, F9N11.10, F9N11_10, VLN4  gene VLN4  function Arabidopsis thaliana VILLIN4  go_process cytoskeleton organization|GO:0007010||IEA  go_function actin binding|GO:0003779||IEA  go_component cellular_component|GO:0005575||ND  go_process cytoskeleton organization|GO:0007010||ISS  go_function actin binding|GO:0003779||ISS  product VLN4 (ARABIDOPSIS THALIANA VILLIN 4); actin binding  note ARABIDOPSIS THALIANA VILLIN 4 (VLN4); FUNCTIONS IN: actin binding; INVOLVED IN: cytoskeleton organization; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gelsolin (InterPro:IPR007122), Villin headpiece (InterPro:IPR003128), Gelsolin region (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: villin, putative (TAIR:AT5G57320.1); Has 2853 Blast hits to 1935 proteins in 158 species: Archae - 0; Bacteria - 13; Metazoa - 2210; Fungi - 146; Plants - 159; Viruses - 0; Other Eukaryotes - 325 (source: NCBI BLink).  protein_id AT4G30160.1p  transcript_id AT4G30160.1  protein_id AT4G30160.1p  transcript_id AT4G30160.1  
At4g30170	chr4:014762922	0.0	W/14762922-14763137,14763293-14763481,14763819-14763984,14764076-14764482	AT4G30170.1  CDS  gene_syn F9N11.20, F9N11_20  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT2G18980.1); Has 2989 Blast hits to 2973 proteins in 233 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 149; Plants - 2794; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT4G30170.1p  transcript_id AT4G30170.1  protein_id AT4G30170.1p  transcript_id AT4G30170.1  
At4g30180	chr4:014769028	0.0	W/14769028-14769504	AT4G30180.1  CDS  gene_syn F9N11.30, F9N11_30  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription regulator activity|GO:0030528|12897250|TAS  product transcription factor/ transcription regulator  note transcription factor/ transcription regulator; FUNCTIONS IN: transcription factor activity, transcription regulator activity; INVOLVED IN: regulation of transcription; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G18969.1); Has 54 Blast hits to 54 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G30180.1p  transcript_id AT4G30180.1  protein_id AT4G30180.1p  transcript_id AT4G30180.1  
At4g30190	chr4:014775879	0.0	C/14775879-14775920,14774746-14774865,14774410-14774646,14773540-14774301,14773330-14773452,14773146-14773250,14772898-14773042,14772644-14772808,14772306-14772544,14772174-14772206,14772000-14772081,14771736-14771896,14771466-14771639,14771005-14771369,14770820-14770913	AT4G30190.1  CDS  gene_syn AHA2, F9N11.40, F9N11_40, P-TYPE H(+)-ATPASE ISOFORM 2, PLASMA MEMBRANE PROTON ATPASE 2, PMA2  gene AHA2  function belongs to the P-type ATPase superfamily of cation-transporting ATPases, pumps protons out of the cell, generating a proton gradient that drives the active transport of nutrients by proton symport. has two autoinhibitory regions within the C-terminal dom  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process ATP biosynthetic process|GO:0006754||IEA  go_process cation transport|GO:0006812||IEA  go_process metabolic process|GO:0008152||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component plasma membrane|GO:0005886|8883393|IDA  go_function hydrogen-exporting ATPase activity, phosphorylative mechanism|GO:0008553||IDA  go_function ATPase activity|GO:0016887||ISS  product AHA2; ATPase/ hydrogen-exporting ATPase, phosphorylative mechanism  note AHA2; FUNCTIONS IN: ATPase activity, hydrogen-exporting ATPase activity, phosphorylative mechanism; INVOLVED IN: cation transport, metabolic process, ATP biosynthetic process; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type, plasma-membrane proton-efflux (InterPro:IPR006534), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: AHA1 (ARABIDOPSIS H+ ATPASE 1); ATPase/ hydrogen-exporting ATPase, phosphorylative mechanism / protein binding (TAIR:AT2G18960.1); Has 20770 Blast hits to 18609 proteins in 1831 species: Archae - 417; Bacteria - 11423; Metazoa - 3213; Fungi - 1650; Plants - 1097; Viruses - 3; Other Eukaryotes - 2967 (source: NCBI BLink).  protein_id AT4G30190.1p  transcript_id AT4G30190.1  protein_id AT4G30190.1p  transcript_id AT4G30190.1  
At4g30200	chr4:014788740	0.0	C/14788740-14789103,14788034-14788663,14786852-14787915	AT4G30200.1  CDS  gene_syn VEL1, VERNALIZATION5/VIN3-LIKE  gene VEL1  function Encodes a protein with similarity to VRN5 and VIN3.Contains both a fibronectin III and PHD finger domain. VEL1 is a part of a polycomb repressive complex (PRC2) that is involved in epigenetic silencing of the FLC flowering locus.  go_component PcG protein complex|GO:0031519|18854416|IDA  go_process vegetative to reproductive phase transition|GO:0010228|18854416|IPI  go_function molecular_function|GO:0003674||ND  product unknown protein  note VERNALIZATION5/VIN3-LIKE (VEL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vegetative to reproductive phase transition; LOCATED IN: PcG protein complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Fibronectin, type III-like fold (InterPro:IPR008957), Fibronectin, type III (InterPro:IPR003961); BEST Arabidopsis thaliana protein match is: VIN3 (VERNALIZATION INSENSITIVE 3); protein binding / zinc ion binding (TAIR:AT5G57380.1); Has 150 Blast hits to 141 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 12; Plants - 123; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT4G30200.1p  transcript_id AT4G30200.1  protein_id AT4G30200.1p  transcript_id AT4G30200.1  
At4g30200	chr4:014790052	0.0	C/14790052-14790070,14788740-14789135,14788034-14788663,14786852-14787915	AT4G30200.3  CDS  gene_syn VEL1, VERNALIZATION5/VIN3-LIKE  gene VEL1  function Encodes a protein with similarity to VRN5 and VIN3.Contains both a fibronectin III and PHD finger domain. VEL1 is a part of a polycomb repressive complex (PRC2) that is involved in epigenetic silencing of the FLC flowering locus.  go_component PcG protein complex|GO:0031519|18854416|IDA  go_process vegetative to reproductive phase transition|GO:0010228|18854416|IPI  go_function molecular_function|GO:0003674||ND  product unknown protein  note VERNALIZATION5/VIN3-LIKE (VEL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vegetative to reproductive phase transition; LOCATED IN: PcG protein complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Fibronectin, type III-like fold (InterPro:IPR008957), Fibronectin, type III (InterPro:IPR003961); BEST Arabidopsis thaliana protein match is: VIN3 (VERNALIZATION INSENSITIVE 3); protein binding / zinc ion binding (TAIR:AT5G57380.1); Has 150 Blast hits to 141 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 12; Plants - 123; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT4G30200.3p  transcript_id AT4G30200.3  protein_id AT4G30200.3p  transcript_id AT4G30200.3  
At4g30200	chr4:014790052	0.0	C/14790052-14790070,14788740-14789135,14788034-14788663,14786852-14787951	AT4G30200.2  CDS  gene_syn VEL1, VERNALIZATION5/VIN3-LIKE  gene VEL1  function Encodes a protein with similarity to VRN5 and VIN3.Contains both a fibronectin III and PHD finger domain. VEL1 is a part of a polycomb repressive complex (PRC2) that is involved in epigenetic silencing of the FLC flowering locus.  go_component PcG protein complex|GO:0031519|18854416|IDA  go_process vegetative to reproductive phase transition|GO:0010228|18854416|IPI  go_function molecular_function|GO:0003674||ND  product unknown protein  note VERNALIZATION5/VIN3-LIKE (VEL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vegetative to reproductive phase transition; LOCATED IN: PcG protein complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Fibronectin, type III-like fold (InterPro:IPR008957), Fibronectin, type III (InterPro:IPR003961); BEST Arabidopsis thaliana protein match is: VIN3 (VERNALIZATION INSENSITIVE 3); protein binding / zinc ion binding (TAIR:AT5G57380.1); Has 159 Blast hits to 146 proteins in 28 species: Archae - 0; Bacteria - 5; Metazoa - 3; Fungi - 21; Plants - 123; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT4G30200.2p  transcript_id AT4G30200.2  protein_id AT4G30200.2p  transcript_id AT4G30200.2  
At4g30210	chr4:014796900	0.0	W/14796900-14797262,14797346-14797405,14797483-14797559,14797662-14797719,14797813-14797896,14798022-14798058,14798172-14798241,14798334-14798525,14798611-14798703,14798796-14799018,14799117-14799200,14799296-14799447,14799550-14799646,14799781-14800008,14800087-14800209,14800295-14800408,14800498-14800578	AT4G30210.2  CDS  gene_syn AR2, ARABIDOPSIS P450 REDUCTASE 2, ATR2, F9N11.60, F9N11_60  gene ATR2  function Encodes NADPH-cytochrome P450 reductase that catalyzes the first oxidative step of the phenylpropanoid general pathway.  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum|GO:0005783|9235908|IDA  go_component chloroplast|GO:0009507|9235908|ISS  go_process phenylpropanoid metabolic process|GO:0009698|9235908|IDA  go_process phenylpropanoid metabolic process|GO:0009698|9449848|IDA  go_function NADPH-hemoprotein reductase activity|GO:0003958|10733884|IDA  go_function NADPH-hemoprotein reductase activity|GO:0003958|9449848|IDA  product ATR2 (ARABIDOPSIS P450 REDUCTASE 2); NADPH-hemoprotein reductase  note ARABIDOPSIS P450 REDUCTASE 2 (ATR2); FUNCTIONS IN: NADPH-hemoprotein reductase activity; INVOLVED IN: phenylpropanoid metabolic process; LOCATED IN: endoplasmic reticulum, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Flavodoxin-like (InterPro:IPR001094), Flavodoxin/nitric oxide synthase (InterPro:IPR008254), Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), FAD-binding, type 1 (InterPro:IPR003097), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), NADPH Cytochrome P450 Reductase (InterPro:IPR015702); BEST Arabidopsis thaliana protein match is: ATR1 (ARABIDOPSIS P450 REDUCTASE 1); NADPH-hemoprotein reductase (TAIR:AT4G24520.1); Has 4681 Blast hits to 4404 proteins in 989 species: Archae - 3; Bacteria - 2029; Metazoa - 892; Fungi - 587; Plants - 416; Viruses - 0; Other Eukaryotes - 754 (source: NCBI BLink).  protein_id AT4G30210.2p  transcript_id AT4G30210.2  protein_id AT4G30210.2p  transcript_id AT4G30210.2  
At4g30210	chr4:014796900	0.0	W/14796900-14797262,14797346-14797405,14797483-14797559,14797662-14797719,14797813-14797896,14798022-14798058,14798172-14798241,14798334-14798525,14798611-14798703,14798796-14799018,14799117-14799203,14799296-14799447,14799550-14799646,14799781-14800008,14800087-14800209,14800295-14800408,14800498-14800578	AT4G30210.1  CDS  gene_syn AR2, ARABIDOPSIS P450 REDUCTASE 2, ATR2, F9N11.60, F9N11_60  gene ATR2  function Encodes NADPH-cytochrome P450 reductase that catalyzes the first oxidative step of the phenylpropanoid general pathway.  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum|GO:0005783|9235908|IDA  go_component chloroplast|GO:0009507|9235908|ISS  go_process phenylpropanoid metabolic process|GO:0009698|9235908|IDA  go_process phenylpropanoid metabolic process|GO:0009698|9449848|IDA  go_function NADPH-hemoprotein reductase activity|GO:0003958|10733884|IDA  go_function NADPH-hemoprotein reductase activity|GO:0003958|9449848|IDA  product ATR2 (ARABIDOPSIS P450 REDUCTASE 2); NADPH-hemoprotein reductase  note ARABIDOPSIS P450 REDUCTASE 2 (ATR2); FUNCTIONS IN: NADPH-hemoprotein reductase activity; INVOLVED IN: phenylpropanoid metabolic process; LOCATED IN: endoplasmic reticulum, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Flavodoxin-like (InterPro:IPR001094), Flavodoxin/nitric oxide synthase (InterPro:IPR008254), Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), FAD-binding, type 1 (InterPro:IPR003097), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709); BEST Arabidopsis thaliana protein match is: ATR1 (ARABIDOPSIS P450 REDUCTASE 1); NADPH-hemoprotein reductase (TAIR:AT4G24520.1); Has 4680 Blast hits to 4404 proteins in 989 species: Archae - 3; Bacteria - 2030; Metazoa - 891; Fungi - 587; Plants - 416; Viruses - 0; Other Eukaryotes - 753 (source: NCBI BLink).  protein_id AT4G30210.1p  transcript_id AT4G30210.1  protein_id AT4G30210.1p  transcript_id AT4G30210.1  
At4g30220	chr4:014804254	0.0	C/14804254-14804259,14803786-14803873,14803670-14803707,14803418-14803482,14803100-14803169	AT4G30220.1  CDS  gene_syn F9N11.70, F9N11_70, RUXF, SMALL NUCLEAR RIBONUCLEOPROTEIN F  gene RUXF  go_component nucleolus|GO:0005730|15496452|IDA  go_component nucleus|GO:0005634||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_function molecular_function|GO:0003674||ND  product RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)  note SMALL NUCLEAR RIBONUCLEOPROTEIN F (RUXF); FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus, small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small nuclear ribonucleoprotein SmF (InterPro:IPR016487), Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14285.1); Has 865 Blast hits to 865 proteins in 209 species: Archae - 256; Bacteria - 0; Metazoa - 220; Fungi - 185; Plants - 64; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink).  protein_id AT4G30220.1p  transcript_id AT4G30220.1  protein_id AT4G30220.1p  transcript_id AT4G30220.1  
At4g30230	chr4:014806376	0.0	W/14806376-14807158	AT4G30230.1  CDS  gene_syn F9N11.80, F9N11_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G30230.1p  transcript_id AT4G30230.1  protein_id AT4G30230.1p  transcript_id AT4G30230.1  
At4g30240	chr4:014809663	0.0	C/14809663-14809745,14809341-14809455,14808656-14809240,14808481-14808580,14808359-14808378	AT4G30240.1  CDS  gene_syn F9N11.90, F9N11_90  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_process Golgi vesicle transport|GO:0048193||IEA  go_function protein binding|GO:0005515||IEA  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: Golgi vesicle transport, vesicle-mediated transport; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: t-SNARE (InterPro:IPR010989), Syntaxin 6, N-terminal (InterPro:IPR015260); BEST Arabidopsis thaliana protein match is: syntaxin family protein (TAIR:AT2G18860.1); Has 70 Blast hits to 70 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G30240.1p  transcript_id AT4G30240.1  protein_id AT4G30240.1p  transcript_id AT4G30240.1  
At4g30250	chr4:014811262	0.0	C/14811262-14812821	AT4G30250.1  CDS  gene_syn F9N11.100, F9N11_100  go_component endomembrane system|GO:0012505||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process biological_process|GO:0008150||ND  go_function ATP binding|GO:0005524||ISS  go_function ATPase activity|GO:0016887||ISS  product ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding  note ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT5G57480.1); Has 13603 Blast hits to 12641 proteins in 1617 species: Archae - 745; Bacteria - 3970; Metazoa - 2389; Fungi - 1640; Plants - 1239; Viruses - 45; Other Eukaryotes - 3575 (source: NCBI BLink).  protein_id AT4G30250.1p  transcript_id AT4G30250.1  protein_id AT4G30250.1p  transcript_id AT4G30250.1  
At4g30260	chr4:014818216	0.0	C/14818216-14818722,14817262-14817336,14816890-14817150	AT4G30260.1  CDS  gene_syn F9N11.110, F9N11_110  go_component plasma membrane|GO:0005886|15060130|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane Yip1 family protein  note integral membrane Yip1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: Yip1 domain (InterPro:IPR006977); BEST Arabidopsis thaliana protein match is: integral membrane Yip1 family protein (TAIR:AT2G18840.1); Has 733 Blast hits to 718 proteins in 145 species: Archae - 0; Bacteria - 8; Metazoa - 377; Fungi - 147; Plants - 99; Viruses - 4; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT4G30260.1p  transcript_id AT4G30260.1  protein_id AT4G30260.1p  transcript_id AT4G30260.1  
At4g30270	chr4:014820185	0.0	C/14820185-14820448,14819899-14820092,14819445-14819796	AT4G30270.1  CDS  gene_syn F9N11.120, F9N11_120, MERI-5, MERI5B, MERISTEM 5, SEN4, SENESCENCE 4, meristem-5  gene MERI5B  function encodes a protein similar to endo xyloglucan transferase in sequence. It is also very similar to BRU1 in soybean, which is involved in brassinosteroid response.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process response to gibberellin stimulus|GO:0009739||IGI  go_process response to brassinosteroid stimulus|GO:0009741||IGI  go_process plant-type cell wall loosening|GO:0009828|11889033|TAS  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762||TAS  go_component cell wall|GO:0005618|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process aging|GO:0007568|8624406|IEP  go_process gibberellic acid mediated signaling|GO:0009740||TAS  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762|10406121|IDA  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product MERI5B (meristem-5); hydrolase, acting on glycosyl bonds / xyloglucan:xyloglucosyl transferase  note meristem-5 (MERI5B); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: aging, response to gibberellin stimulus, response to brassinosteroid stimulus, gibberellic acid mediated signaling, plant-type cell wall loosening; LOCATED IN: cell wall, plasma membrane, cytoplasm, plant-type cell wall; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: TCH4 (Touch 4); hydrolase, acting on glycosyl bonds / xyloglucan:xyloglucosyl transferase (TAIR:AT5G57560.1); Has 1382 Blast hits to 1374 proteins in 211 species: Archae - 0; Bacteria - 188; Metazoa - 0; Fungi - 290; Plants - 809; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT4G30270.1p  transcript_id AT4G30270.1  protein_id AT4G30270.1p  transcript_id AT4G30270.1  
At4g30280	chr4:014826717	0.0	C/14826717-14826998,14826426-14826619,14825958-14826330	AT4G30280.1  CDS  gene_syn ATXTH18, F17I23.380, F17I23_380, XTH18, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18  gene XTH18  function putative xyloglucan endotransglycosylase/hydrolase, expressed in the mature or basal regions of both the main and lateral roots, but not in the tip of these roots where cell division occurs.  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process cellular glucan metabolic process|GO:0006073||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762||IEA  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product XTH18 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18); hydrolase, acting on glycosyl bonds / hydrolase, hydrolyzing O-glycosyl compounds / xyloglucan:xyloglucosyl transferase  note XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18 (XTH18); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, apoplast, cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16, active site (InterPro:IPR008263), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: XTH17 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17); hydrolase, acting on glycosyl bonds / hydrolase, hydrolyzing O-glycosyl compounds / xyloglucan:xyloglucosyl transferase (TAIR:AT1G65310.1); Has 1407 Blast hits to 1399 proteins in 214 species: Archae - 0; Bacteria - 193; Metazoa - 0; Fungi - 310; Plants - 808; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT4G30280.1p  transcript_id AT4G30280.1  protein_id AT4G30280.1p  transcript_id AT4G30280.1  
At4g30290	chr4:014829699	0.0	C/14829699-14829965,14829418-14829611,14828954-14829326	AT4G30290.1  CDS  gene_syn ATXTH19, F17I23.370, F17I23_370, XTH19, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19  gene XTH19  function putative xyloglucan endotransglycosylase/hydrolase, expressed throughout both the main and the lateral root, with intensive expression at the dividing and elongating regions. Is expressed in lateral root primordia but expression ceases after lateral root begins to grow.  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process cellular glucan metabolic process|GO:0006073||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762||IEA  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product XTH19 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19); hydrolase, acting on glycosyl bonds / hydrolase, hydrolyzing O-glycosyl compounds / xyloglucan:xyloglucosyl transferase  note XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19 (XTH19); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, apoplast, cell wall; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16, active site (InterPro:IPR008263), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: XTH18 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18); hydrolase, acting on glycosyl bonds / hydrolase, hydrolyzing O-glycosyl compounds / xyloglucan:xyloglucosyl transferase (TAIR:AT4G30280.1); Has 1407 Blast hits to 1399 proteins in 215 species: Archae - 0; Bacteria - 191; Metazoa - 0; Fungi - 312; Plants - 807; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).  protein_id AT4G30290.1p  transcript_id AT4G30290.1  protein_id AT4G30290.1p  transcript_id AT4G30290.1  
At4g30300	chr4:014831005	0.0	C/14831005-14831550	AT4G30300.1  CDS  gene_syn ATNAP15, F17I23.360, F17I23_360  gene ATNAP15  function member of NAP subfamily  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  product ATNAP15; transporter  note ATNAP15; FUNCTIONS IN: transporter activity; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATRLI2; transporter (TAIR:AT4G19210.1); Has 101481 Blast hits to 97651 proteins in 2147 species: Archae - 2447; Bacteria - 71421; Metazoa - 3424; Fungi - 1009; Plants - 919; Viruses - 13; Other Eukaryotes - 22248 (source: NCBI BLink).  protein_id AT4G30300.1p  transcript_id AT4G30300.1  protein_id AT4G30300.1p  transcript_id AT4G30300.1  
At4g30310	chr4:014831913	0.0	W/14831913-14831994,14832194-14832273,14832352-14832469,14832559-14832737,14832824-14832906,14832993-14833177,14833284-14833345,14833518-14833596,14833696-14833815,14833899-14834018,14834124-14834244,14834315-14834471,14834587-14834655,14834754-14834798	AT4G30310.1  CDS  gene_syn F17I23.350, F17I23_350  go_component chloroplast|GO:0009507|18431481|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function carbohydrate kinase activity|GO:0019200||ISS  product ribitol kinase, putative  note ribitol kinase, putative; FUNCTIONS IN: carbohydrate kinase activity, phosphotransferase activity, alcohol group as acceptor; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate kinase, FGGY (InterPro:IPR000577), Carbohydrate kinase, FGGY, N-terminal (InterPro:IPR018484), Carbohydrate kinase, FGGY-related (InterPro:IPR006003); Has 7046 Blast hits to 6787 proteins in 1149 species: Archae - 76; Bacteria - 5128; Metazoa - 361; Fungi - 143; Plants - 31; Viruses - 0; Other Eukaryotes - 1307 (source: NCBI BLink).  protein_id AT4G30310.1p  transcript_id AT4G30310.1  protein_id AT4G30310.1p  transcript_id AT4G30310.1  
At4g30310	chr4:014831913	0.0	W/14831913-14831994,14832194-14832273,14832352-14832469,14832559-14832737,14832824-14832906,14832993-14833177,14833284-14833345,14833518-14833626,14833696-14833815,14833899-14834018,14834124-14834244,14834315-14834471,14834587-14834659,14834754-14834881,14834970-14835092	AT4G30310.2  CDS  gene_syn F17I23.350, F17I23_350  go_component chloroplast|GO:0009507|18431481|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function carbohydrate kinase activity|GO:0019200||ISS  product ribitol kinase, putative  note ribitol kinase, putative; FUNCTIONS IN: carbohydrate kinase activity, phosphotransferase activity, alcohol group as acceptor; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate kinase, FGGY (InterPro:IPR000577), Carbohydrate kinase, FGGY, C-terminal (InterPro:IPR018485), Carbohydrate kinase, FGGY, N-terminal (InterPro:IPR018484), Carbohydrate kinase, FGGY-related (InterPro:IPR006003); Has 9520 Blast hits to 8571 proteins in 1304 species: Archae - 98; Bacteria - 6578; Metazoa - 414; Fungi - 208; Plants - 50; Viruses - 0; Other Eukaryotes - 2172 (source: NCBI BLink).  protein_id AT4G30310.2p  transcript_id AT4G30310.2  protein_id AT4G30310.2p  transcript_id AT4G30310.2  
At4g30310	chr4:014832633	0.0	W/14832633-14832737,14832824-14832906,14832993-14833177,14833284-14833345,14833518-14833596,14833696-14833815,14833899-14834018,14834124-14834244,14834315-14834471,14834587-14834659,14834754-14834881,14834970-14835092	AT4G30310.3  CDS  gene_syn F17I23.350, F17I23_350  go_component chloroplast|GO:0009507|18431481|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function carbohydrate kinase activity|GO:0019200||ISS  product ribitol kinase, putative  note ribitol kinase, putative; FUNCTIONS IN: carbohydrate kinase activity, phosphotransferase activity, alcohol group as acceptor; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate kinase, FGGY (InterPro:IPR000577), Carbohydrate kinase, FGGY, C-terminal (InterPro:IPR018485), Carbohydrate kinase, FGGY-related (InterPro:IPR006003); Has 7207 Blast hits to 7204 proteins in 1280 species: Archae - 67; Bacteria - 4976; Metazoa - 383; Fungi - 208; Plants - 34; Viruses - 0; Other Eukaryotes - 1539 (source: NCBI BLink).  protein_id AT4G30310.3p  transcript_id AT4G30310.3  protein_id AT4G30310.3p  transcript_id AT4G30310.3  
At4g30320	chr4:014835833	0.0	W/14835833-14836318	AT4G30320.1  CDS  gene_syn F17I23.340, F17I23_340  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_component extracellular region|GO:0005576||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product allergen V5/Tpx-1-related family protein  note allergen V5/Tpx-1-related family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related, conserved site (InterPro:IPR018244), Allergen V5/Tpx-1 related (InterPro:IPR001283), Ves allergen (InterPro:IPR002413), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: allergen V5/Tpx-1-related family protein (TAIR:AT5G57625.1); Has 2229 Blast hits to 2138 proteins in 288 species: Archae - 0; Bacteria - 50; Metazoa - 1306; Fungi - 224; Plants - 597; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT4G30320.1p  transcript_id AT4G30320.1  protein_id AT4G30320.1p  transcript_id AT4G30320.1  
At4g30330	chr4:014837878	0.0	C/14837878-14837919,14837760-14837786,14837582-14837644,14837031-14837109,14836891-14836936,14836773-14836782	AT4G30330.1  CDS  gene_syn F17I23.330, F17I23_330  go_component nucleus|GO:0005634||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_function molecular_function|GO:0003674||ND  product small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative  note small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative; FUNCTIONS IN: molecular_function unknown; LOCATED IN: small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative (TAIR:AT2G18740.1); Has 525 Blast hits to 525 proteins in 150 species: Archae - 78; Bacteria - 0; Metazoa - 182; Fungi - 106; Plants - 70; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT4G30330.1p  transcript_id AT4G30330.1  protein_id AT4G30330.1p  transcript_id AT4G30330.1  
At4g30340	chr4:014840573	0.0	C/14840573-14840941,14840083-14840205,14839616-14840006,14839427-14839509,14839254-14839324,14839078-14839155,14838907-14838994,14838703-14838819,14838465-14838623	AT4G30340.1  CDS  gene_syn ATDGK7, Diacylglycerol kinase 7, F17I23.320, F17I23_320  gene ATDGK7  function encodes a diacylglycerol kinase. Applying a specific diacylglycerol kinase inhibitor to the growth media resulted in reduced root elongation and plant growth. Gene is expressed throughout the plant but is strongest in flowers and young seedlings.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|GO:0007205||ISS  go_process root development|GO:0048364|16081412|IMP  go_process leaf development|GO:0048366|16081412|IMP  go_function diacylglycerol kinase activity|GO:0004143|16081412|IDA  go_function diacylglycerol kinase activity|GO:0004143||ISS  product ATDGK7 (Diacylglycerol kinase 7); diacylglycerol kinase  note Diacylglycerol kinase 7 (ATDGK7); FUNCTIONS IN: diacylglycerol kinase activity; INVOLVED IN: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway, leaf development, root development; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Diacylglycerol kinase, catalytic region (InterPro:IPR001206), Diacylglycerol kinase accessory region (InterPro:IPR000756), Diacylglycerol kinase, plant (InterPro:IPR016961); BEST Arabidopsis thaliana protein match is: diacylglycerol kinase, putative (TAIR:AT2G18730.1); Has 1010 Blast hits to 1005 proteins in 144 species: Archae - 0; Bacteria - 83; Metazoa - 681; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT4G30340.1p  transcript_id AT4G30340.1  protein_id AT4G30340.1p  transcript_id AT4G30340.1  
At4g30350	chr4:014848031	0.0	W/14848031-14849226,14849315-14849558,14849639-14850973	AT4G30350.1  CDS  gene_syn F17I23.310, F17I23_310  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product heat shock protein-related  note heat shock protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: heat shock protein-related (TAIR:AT5G57710.1); Has 9629 Blast hits to 8914 proteins in 1507 species: Archae - 15; Bacteria - 6840; Metazoa - 9; Fungi - 184; Plants - 322; Viruses - 0; Other Eukaryotes - 2259 (source: NCBI BLink).  protein_id AT4G30350.1p  transcript_id AT4G30350.1  protein_id AT4G30350.1p  transcript_id AT4G30350.1  
At4g30360	chr4:014857751	0.0	C/14857751-14857779,14856783-14857539,14856400-14856698,14856184-14856295,14855864-14856100,14855060-14855788	AT4G30360.1  CDS  gene_syn ATCNGC17, CNGC17, CYCLIC NUCLEOTIDE-GATED CHANNEL 17, F17I23.300, F17I23_300  gene ATCNGC17  function member of Cyclic nucleotide gated channel family  go_component membrane|GO:0016020||IEA  go_process ion transport|GO:0006811||IEA  go_process potassium ion transport|GO:0006813||IEA  go_function ion channel activity|GO:0005216||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function cyclic nucleotide binding|GO:0030551||ISS  product ATCNGC17; calmodulin binding / cyclic nucleotide binding / ion channel  note ATCNGC17; FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: potassium ion transport, ion transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: ATCNGC14; calmodulin binding / cyclic nucleotide binding / ion channel (TAIR:AT2G24610.1); Has 2660 Blast hits to 2569 proteins in 197 species: Archae - 0; Bacteria - 33; Metazoa - 1306; Fungi - 0; Plants - 619; Viruses - 0; Other Eukaryotes - 702 (source: NCBI BLink).  protein_id AT4G30360.1p  transcript_id AT4G30360.1  protein_id AT4G30360.1p  transcript_id AT4G30360.1  
At4g30370	chr4:014858743	0.0	C/14858743-14859273	AT4G30370.1  CDS  gene_syn F17I23.290, F17I23_290  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process response to chitin|GO:0010200|17722694|IEP  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: response to chitin; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G18670.1); Has 5226 Blast hits to 5210 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 1823; Fungi - 334; Plants - 2376; Viruses - 14; Other Eukaryotes - 679 (source: NCBI BLink).  protein_id AT4G30370.1p  transcript_id AT4G30370.1  protein_id AT4G30370.1p  transcript_id AT4G30370.1  
At4g30380	chr4:014860486	0.0	W/14860486-14860585,14860723-14860994	AT4G30380.1  CDS  gene_syn EXLB2, EXPANSIN-LIKE B2 PRECURSOR, F17I23.280, F17I23_280  gene EXLB2  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product EXLB2 (EXPANSIN-LIKE B2 PRECURSOR)  note EXPANSIN-LIKE B2 PRECURSOR (EXLB2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: EXLB3 (EXPANSIN-LIKE B3 PRECURSOR) (TAIR:AT2G18660.1); Has 292 Blast hits to 292 proteins in 83 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 28; Plants - 248; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G30380.1p  transcript_id AT4G30380.1  protein_id AT4G30380.1p  transcript_id AT4G30380.1  
At4g30390	chr4:014862790	0.0	C/14862790-14862906,14862347-14862476,14862224-14862264	AT4G30390.1  CDS  gene_syn F17I23.270, F17I23_270  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 13 Blast hits to 13 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G30390.1p  transcript_id AT4G30390.1  protein_id AT4G30390.1p  transcript_id AT4G30390.1  
At4g30400	chr4:014867068	0.0	W/14867068-14868486	AT4G30400.1  CDS  gene_syn F17I23.260, F17I23_260  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: MEE16 (maternal effect embryo arrest 16); protein binding / zinc ion binding (TAIR:AT2G18650.1); Has 6257 Blast hits to 6242 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 1925; Fungi - 543; Plants - 2685; Viruses - 49; Other Eukaryotes - 1055 (source: NCBI BLink).  protein_id AT4G30400.1p  transcript_id AT4G30400.1  protein_id AT4G30400.1p  transcript_id AT4G30400.1  
At4g30410	chr4:014871309	0.0	C/14871309-14871851	AT4G30410.1  CDS  gene_syn F17I23.250, F17I23_250  go_function transcription factor activity|GO:0003700|12679534|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57780.1); Has 76 Blast hits to 76 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G30410.1p  transcript_id AT4G30410.1  protein_id AT4G30410.1p  transcript_id AT4G30410.1  
At4g30410	chr4:014871309	0.0	C/14871309-14871851	AT4G30410.2  CDS  gene_syn F17I23.250, F17I23_250  go_function transcription factor activity|GO:0003700|12679534|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57780.1); Has 76 Blast hits to 76 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G30410.2p  transcript_id AT4G30410.2  protein_id AT4G30410.2p  transcript_id AT4G30410.2  
At4g30420	chr4:014877069	0.0	W/14877069-14877217,14877498-14877572,14877659-14877775,14877866-14878106,14878204-14878362,14878454-14878605,14878686-14878914	AT4G30420.1  CDS  gene_syn F17I23.240, F17I23_240  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product nodulin MtN21 family protein  note nodulin MtN21 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT4G28040.5); Has 2140 Blast hits to 2128 proteins in 350 species: Archae - 18; Bacteria - 800; Metazoa - 4; Fungi - 0; Plants - 634; Viruses - 0; Other Eukaryotes - 684 (source: NCBI BLink).  protein_id AT4G30420.1p  transcript_id AT4G30420.1  protein_id AT4G30420.1p  transcript_id AT4G30420.1  
At4g30430	chr4:014879766	0.0	C/14879766-14880272,14879029-14879340	AT4G30430.1  CDS  gene_syn F17I23.230, F17I23_230, TET9, TETRASPANIN9  gene TET9  function Member of TETRASPANIN family  go_component plasma membrane|GO:0005886|17317660|IDA  go_process aging|GO:0007568||ISS  go_function molecular_function|GO:0003674||ND  product TET9 (TETRASPANIN9)  note TETRASPANIN9 (TET9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; LOCATED IN: plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499), Tetraspanin, subgroup (InterPro:IPR000301); BEST Arabidopsis thaliana protein match is: TET8 (TETRASPANIN8) (TAIR:AT2G23810.1); Has 244 Blast hits to 243 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 0; Plants - 213; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G30430.1p  transcript_id AT4G30430.1  protein_id AT4G30430.1p  transcript_id AT4G30430.1  
At4g30440	chr4:014881976	0.0	C/14881976-14883265	AT4G30440.1  CDS  gene_syn F17I23.220, F17I23_220, GAE1, UDP-D-GLUCURONATE 4-EPIMERASE 1  gene GAE1  function UDP-D-glucuronate 4-epimerase  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_component cellular_component|GO:0005575||ND  go_process nucleotide-sugar metabolic process|GO:0009225||ISS  go_function catalytic activity|GO:0003824||ISS  go_function UDP-glucuronate 4-epimerase activity|GO:0050378|15247385|IDA  product GAE1 (UDP-D-GLUCURONATE 4-EPIMERASE 1); UDP-glucuronate 4-epimerase/ catalytic  note UDP-D-GLUCURONATE 4-EPIMERASE 1 (GAE1); FUNCTIONS IN: UDP-glucuronate 4-epimerase activity, catalytic activity; INVOLVED IN: cellular metabolic process, carbohydrate metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: GAE2 (UDP-D-GLUCURONATE 4-EPIMERASE 2); UDP-glucuronate 4-epimerase/ catalytic (TAIR:AT1G02000.1); Has 30928 Blast hits to 30923 proteins in 1708 species: Archae - 481; Bacteria - 14622; Metazoa - 673; Fungi - 298; Plants - 653; Viruses - 24; Other Eukaryotes - 14177 (source: NCBI BLink).  protein_id AT4G30440.1p  transcript_id AT4G30440.1  protein_id AT4G30440.1p  transcript_id AT4G30440.1  
At4g30450	chr4:014886283	0.0	C/14886283-14886606	AT4G30450.1  CDS  gene_syn F17I23.210, F17I23_210  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; Has 43739 Blast hits to 8713 proteins in 735 species: Archae - 54; Bacteria - 9257; Metazoa - 13607; Fungi - 3484; Plants - 5181; Viruses - 598; Other Eukaryotes - 11558 (source: NCBI BLink).  protein_id AT4G30450.1p  transcript_id AT4G30450.1  protein_id AT4G30450.1p  transcript_id AT4G30450.1  
At4g30460	chr4:014889246	0.0	C/14889246-14889734	AT4G30460.1  CDS  gene_syn F17I23.200, F17I23_200  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; Has 178413 Blast hits to 43322 proteins in 1903 species: Archae - 351; Bacteria - 47859; Metazoa - 57940; Fungi - 13178; Plants - 15018; Viruses - 2497; Other Eukaryotes - 41570 (source: NCBI BLink).  protein_id AT4G30460.1p  transcript_id AT4G30460.1  protein_id AT4G30460.1p  transcript_id AT4G30460.1  
At4g30470	chr4:014894263	0.0	W/14894263-14894386,14894496-14894653,14894761-14894949,14895761-14895914,14896141-14896333,14896413-14896506	AT4G30470.1  CDS  gene_syn F17I23.190, F17I23_190  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  go_component cellular_component|GO:0005575||ND  go_process lignin biosynthetic process|GO:0009809||ISS  go_function cinnamoyl-CoA reductase activity|GO:0016621||ISS  product cinnamoyl-CoA reductase-related  note cinnamoyl-CoA reductase-related; FUNCTIONS IN: coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamoyl-CoA reductase-related (TAIR:AT2G23910.1); Has 2384 Blast hits to 2380 proteins in 413 species: Archae - 2; Bacteria - 298; Metazoa - 81; Fungi - 227; Plants - 1171; Viruses - 0; Other Eukaryotes - 605 (source: NCBI BLink).  protein_id AT4G30470.1p  transcript_id AT4G30470.1  protein_id AT4G30470.1p  transcript_id AT4G30470.1  
At4g30480	chr4:014897500	0.0	W/14897500-14897793,14897975-14898157,14898250-14898376,14898535-14898557	AT4G30480.1  CDS  gene_syn F17I23.180, F17I23_180  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  product tetratricopeptide repeat (TPR)-containing protein  note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: TTL4 (Tetratricopetide-repeat Thioredoxin-Like 4); binding (TAIR:AT3G58620.1); Has 5386 Blast hits to 4456 proteins in 316 species: Archae - 58; Bacteria - 384; Metazoa - 2490; Fungi - 615; Plants - 726; Viruses - 25; Other Eukaryotes - 1088 (source: NCBI BLink).  protein_id AT4G30480.1p  transcript_id AT4G30480.1  protein_id AT4G30480.1p  transcript_id AT4G30480.1  
At4g30480	chr4:014897500	0.0	W/14897500-14897793,14897975-14898157,14898250-14898376,14898580-14898693,14898822-14898937	AT4G30480.2  CDS  gene_syn F17I23.180, F17I23_180  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  product tetratricopeptide repeat (TPR)-containing protein  note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: TTL4 (Tetratricopetide-repeat Thioredoxin-Like 4); binding (TAIR:AT3G58620.1); Has 10494 Blast hits to 7864 proteins in 509 species: Archae - 360; Bacteria - 1926; Metazoa - 3500; Fungi - 950; Plants - 1004; Viruses - 24; Other Eukaryotes - 2730 (source: NCBI BLink).  protein_id AT4G30480.2p  transcript_id AT4G30480.2  protein_id AT4G30480.2p  transcript_id AT4G30480.2  
At4g30480	chr4:014897500	0.0	W/14897500-14897793,14897975-14898161,14898250-14898254	AT4G30480.3  CDS  gene_syn F17I23.180, F17I23_180  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  product tetratricopeptide repeat (TPR)-containing protein  note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990); Has 835 Blast hits to 578 proteins in 126 species: Archae - 2; Bacteria - 34; Metazoa - 331; Fungi - 89; Plants - 41; Viruses - 31; Other Eukaryotes - 307 (source: NCBI BLink).  protein_id AT4G30480.3p  transcript_id AT4G30480.3  protein_id AT4G30480.3p  transcript_id AT4G30480.3  
At4g30490	chr4:014901634	0.0	C/14901634-14901883,14901471-14901550,14901259-14901359,14901042-14901164,14900896-14900965,14900708-14900794,14900547-14900612,14900372-14900464,14900236-14900292,14900015-14900146,14899828-14899918,14899659-14899747,14899373-14899566,14899226-14899286	AT4G30490.1  CDS  gene_syn F17I23.170, F17I23_170  go_function ATP binding|GO:0005524||IEA  go_process biological_process|GO:0008150||ND  go_function ATPase activity|GO:0016887||ISS  product AFG1-like ATPase family protein  note AFG1-like ATPase family protein; FUNCTIONS IN: ATPase activity, ATP binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AFG1-like (InterPro:IPR005654); BEST Arabidopsis thaliana protein match is: AFG1-like ATPase family protein (TAIR:AT4G28070.2); Has 3162 Blast hits to 3150 proteins in 720 species: Archae - 0; Bacteria - 1244; Metazoa - 121; Fungi - 138; Plants - 50; Viruses - 0; Other Eukaryotes - 1609 (source: NCBI BLink).  protein_id AT4G30490.1p  transcript_id AT4G30490.1  protein_id AT4G30490.1p  transcript_id AT4G30490.1  
At4g30500	chr4:014903558	0.0	W/14903558-14903641,14903841-14904034,14904312-14904396,14904503-14904568,14904672-14904764	AT4G30500.1  CDS  gene_syn F17I23.160, F17I23_160  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF788 (InterPro:IPR008506); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23940.1); Has 218 Blast hits to 218 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 85; Fungi - 72; Plants - 29; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT4G30500.1p  transcript_id AT4G30500.1  protein_id AT4G30500.1p  transcript_id AT4G30500.1  
At4g30510	chr4:014906868	0.0	C/14906868-14906915,14906684-14906793,14906505-14906596,14906311-14906423,14906079-14906198,14905855-14906000,14905664-14905781	AT4G30510.2  CDS  gene_syn AtATG18b, F17I23.150, F17I23_150  gene AtATG18b  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product AtATG18b  note AtATG18b; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: shoot, flower, root, leaf; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: AtATG18a (TAIR:AT3G62770.3); Has 930 Blast hits to 901 proteins in 161 species: Archae - 0; Bacteria - 2; Metazoa - 467; Fungi - 280; Plants - 77; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT4G30510.2p  transcript_id AT4G30510.2  protein_id AT4G30510.2p  transcript_id AT4G30510.2  
At4g30510	chr4:014906868	0.0	C/14906868-14906915,14906684-14906793,14906505-14906596,14906311-14906423,14906079-14906198,14905855-14906000,14905668-14905781,14905509-14905577,14905299-14905425	AT4G30510.1  CDS  gene_syn AtATG18b, F17I23.150, F17I23_150  gene AtATG18b  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product AtATG18b  note AtATG18b; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: shoot, flower, root, leaf; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: AtATG18a (TAIR:AT3G62770.1); Has 930 Blast hits to 901 proteins in 161 species: Archae - 0; Bacteria - 2; Metazoa - 467; Fungi - 280; Plants - 77; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT4G30510.1p  transcript_id AT4G30510.1  protein_id AT4G30510.1p  transcript_id AT4G30510.1  
At4g30520	chr4:014910929	0.0	C/14910929-14911040,14910702-14910834,14910545-14910616,14910306-14910449,14910115-14910186,14909972-14910031,14909770-14909870,14909562-14909693,14909141-14909485,14908684-14909063,14908193-14908588	AT4G30520.1  CDS  gene_syn F17I23.140, F17I23_140  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function protein kinase activity|GO:0004672||ISS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein / protein kinase family protein  note leucine-rich repeat family protein / protein kinase family protein; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / protein kinase family protein (TAIR:AT2G23950.1); Has 117548 Blast hits to 85564 proteins in 3137 species: Archae - 61; Bacteria - 8749; Metazoa - 40072; Fungi - 5698; Plants - 47342; Viruses - 395; Other Eukaryotes - 15231 (source: NCBI BLink).  protein_id AT4G30520.1p  transcript_id AT4G30520.1  protein_id AT4G30520.1p  transcript_id AT4G30520.1  
At4g30530	chr4:014920605	0.0	W/14920605-14920916,14921500-14921829,14922176-14922286	AT4G30530.1  CDS  gene_syn F17I23.130, F17I23_130  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function catalytic activity|GO:0003824||ISS  product defense-related protein, putative  note defense-related protein, putative; FUNCTIONS IN: catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: defense-related protein, putative (TAIR:AT2G23960.1); Has 4359 Blast hits to 4359 proteins in 762 species: Archae - 195; Bacteria - 1510; Metazoa - 4; Fungi - 141; Plants - 56; Viruses - 3; Other Eukaryotes - 2450 (source: NCBI BLink).  protein_id AT4G30530.1p  transcript_id AT4G30530.1  protein_id AT4G30530.1p  transcript_id AT4G30530.1  
At4g30540	chr4:014923327	0.0	W/14923327-14923641,14924450-14924773,14924968-14925075	AT4G30540.1  CDS  gene_syn F17I23.120, F17I23_120  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_function catalytic activity|GO:0003824||ISS  product glutamine amidotransferase class-I domain-containing protein  note glutamine amidotransferase class-I domain-containing protein; FUNCTIONS IN: catalytic activity; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: defense-related protein, putative (TAIR:AT2G23970.1); Has 3377 Blast hits to 3377 proteins in 585 species: Archae - 160; Bacteria - 966; Metazoa - 2; Fungi - 123; Plants - 51; Viruses - 3; Other Eukaryotes - 2072 (source: NCBI BLink).  protein_id AT4G30540.1p  transcript_id AT4G30540.1  protein_id AT4G30540.1p  transcript_id AT4G30540.1  
At4g30550	chr4:014925618	0.0	W/14925618-14925938,14926172-14926504,14926618-14926713	AT4G30550.1  CDS  gene_syn F17I23.110, F17I23_110  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product glutamine amidotransferase class-I domain-containing protein  note glutamine amidotransferase class-I domain-containing protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: defense-related protein, putative (TAIR:AT2G23970.1); Has 5094 Blast hits to 5094 proteins in 981 species: Archae - 211; Bacteria - 2067; Metazoa - 5; Fungi - 129; Plants - 55; Viruses - 0; Other Eukaryotes - 2627 (source: NCBI BLink).  protein_id AT4G30550.1p  transcript_id AT4G30550.1  protein_id AT4G30550.1p  transcript_id AT4G30550.1  
At4g30560	chr4:014929614	0.0	C/14929614-14929681,14928877-14929465,14928563-14928775,14928162-14928472,14927729-14928077,14926974-14927645	AT4G30560.1  CDS  gene_syn ATCNGC9, CNGC9, CYCLIC NUCLEOTIDE GATED CHANNEL 9, F17I23.100, F17I23_100  gene ATCNGC9  function member of Cyclic nucleotide gated channel family  go_component membrane|GO:0016020|17432890|IDA  go_process ion transport|GO:0006811||IEA  go_process potassium ion transport|GO:0006813||IEA  go_function ion channel activity|GO:0005216||ISS  go_function calmodulin binding|GO:0005516|11782485|IEP  go_function calmodulin binding|GO:0005516|11782485|TAS  go_function calmodulin binding|GO:0005516||ISS  go_function cyclic nucleotide binding|GO:0030551||ISS  product ATCNGC9 (CYCLIC NUCLEOTIDE GATED CHANNEL 9); calmodulin binding / cyclic nucleotide binding / ion channel  note CYCLIC NUCLEOTIDE GATED CHANNEL 9 (ATCNGC9); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: potassium ion transport, ion transport; LOCATED IN: membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding, conserved site (InterPro:IPR018488), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: ATCNGC6; calmodulin binding (TAIR:AT2G23980.1); Has 2857 Blast hits to 2737 proteins in 222 species: Archae - 0; Bacteria - 45; Metazoa - 1327; Fungi - 23; Plants - 657; Viruses - 0; Other Eukaryotes - 805 (source: NCBI BLink).  protein_id AT4G30560.1p  transcript_id AT4G30560.1  protein_id AT4G30560.1p  transcript_id AT4G30560.1  
At4g30570	chr4:014931901	0.0	C/14931901-14931951,14931755-14931820,14931422-14931661,14930706-14931344	AT4G30570.1  CDS  gene_syn F17I23.90, F17I23_90  go_process biosynthetic process|GO:0009058||IEA  go_function transferase activity|GO:0016740||IEA  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_process biosynthetic process|GO:0009058||ISS  go_function nucleotidyltransferase activity|GO:0016779||ISS  product GDP-mannose pyrophosphorylase, putative  note GDP-mannose pyrophosphorylase, putative; FUNCTIONS IN: transferase activity, nucleotidyltransferase activity; INVOLVED IN: biosynthetic process; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), Bacterial transferase hexapeptide repeat (InterPro:IPR001451), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: CYT1 (CYTOKINESIS DEFECTIVE 1); mannose-1-phosphate guanylyltransferase/ nucleotidyltransferase (TAIR:AT2G39770.1); Has 12903 Blast hits to 12895 proteins in 1604 species: Archae - 523; Bacteria - 7994; Metazoa - 333; Fungi - 194; Plants - 189; Viruses - 0; Other Eukaryotes - 3670 (source: NCBI BLink).  protein_id AT4G30570.1p  transcript_id AT4G30570.1  protein_id AT4G30570.1p  transcript_id AT4G30570.1  
At4g30580	chr4:014934447	0.0	C/14934447-14934489,14934315-14934358,14933967-14934039,14933533-14933724,14932994-14933400,14932804-14932905,14932515-14932724	AT4G30580.1  CDS  gene_syn ATS2, EMB1995, EMBRYO DEFECTIVE 1995, F17I23.80, F17I23_80, PHOSPHOLIPID/GLYCEROL ACYLTRANSFERASE  gene ATS2  function Encodes a plastidic lysophosphatidic acid acyltransferase (LPAAT). Is critical for chloroplasts phosphatidic acid biosynthesis. The null allele is embryo lethal.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast|GO:0009507|15169931|IDA  go_process phosphatidylglycerol biosynthetic process|GO:0006655|16774646|IMP  go_process metabolic process|GO:0008152||ISS  go_process embryonic development ending in seed dormancy|GO:0009793|15169931|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function 1-acylglycerol-3-phosphate O-acyltransferase activity|GO:0003841|15169931|IGI  go_function acyltransferase activity|GO:0008415||ISS  product ATS2; 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase  note ATS2; FUNCTIONS IN: 1-acylglycerol-3-phosphate O-acyltransferase activity, acyltransferase activity; INVOLVED IN: embryonic development ending in seed dormancy, metabolic process, phosphatidylglycerol biosynthetic process; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123), 1-acyl-sn-glycerol-3-phosphate acyltransferase (InterPro:IPR004552); BEST Arabidopsis thaliana protein match is: phospholipid/glycerol acyltransferase family protein (TAIR:AT3G05510.2); Has 8139 Blast hits to 8139 proteins in 1392 species: Archae - 0; Bacteria - 4928; Metazoa - 316; Fungi - 103; Plants - 85; Viruses - 0; Other Eukaryotes - 2707 (source: NCBI BLink).  protein_id AT4G30580.1p  transcript_id AT4G30580.1  protein_id AT4G30580.1p  transcript_id AT4G30580.1  
At4g30590	chr4:014936283	0.0	C/14936283-14936469,14935760-14936145	AT4G30590.1  CDS  gene_syn F17I23.70, F17I23_70  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function copper ion binding|GO:0005507||ISS  product plastocyanin-like domain-containing protein  note plastocyanin-like domain-containing protein; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: plastocyanin-like domain-containing protein (TAIR:AT2G23990.1); Has 784 Blast hits to 775 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 784; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G30590.1p  transcript_id AT4G30590.1  protein_id AT4G30590.1p  transcript_id AT4G30590.1  
At4g30600	chr4:014939594	0.0	C/14939594-14940600,14939408-14939492,14939227-14939322,14938868-14939128,14938515-14938760,14938352-14938435,14938142-14938267	AT4G30600.1  CDS  gene_syn F17I23.60, F17I23_60  go_process SRP-dependent cotranslational protein targeting to membrane|GO:0006614||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function GTPase activity|GO:0003924||IEA  go_function signal recognition particle binding|GO:0005047||IEA  go_function GTP binding|GO:0005525||IEA  go_function 7S RNA binding|GO:0008312||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component signal recognition particle, endoplasmic reticulum targeting|GO:0005786||ISS  go_process protein targeting|GO:0006605||ISS  go_function GTP binding|GO:0005525||ISS  product signal recognition particle receptor alpha subunit family protein  note signal recognition particle receptor alpha subunit family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: intracellular protein transport, protein targeting, SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: endoplasmic reticulum, signal recognition particle, endoplasmic reticulum targeting; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Signal recognition particle receptor, alpha subunit, N-terminal (InterPro:IPR007222), Signal recognition particle, SRP54 subunit, helical bundle (InterPro:IPR013822), Signal recognition particle, SRP54 subunit, GTPase (InterPro:IPR000897); BEST Arabidopsis thaliana protein match is: ATHSRP54A (ARABIDOPSIS THALIANA SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT); 7S RNA binding / GTP binding / mRNA binding / nucleoside-triphosphatase/ nucleotide binding (TAIR:AT1G15310.1); Has 11376 Blast hits to 11293 proteins in 1595 species: Archae - 314; Bacteria - 5647; Metazoa - 484; Fungi - 324; Plants - 157; Viruses - 2; Other Eukaryotes - 4448 (source: NCBI BLink).  protein_id AT4G30600.1p  transcript_id AT4G30600.1  protein_id AT4G30600.1p  transcript_id AT4G30600.1  
At4g30610	chr4:014944219	0.0	W/14944219-14944471,14946376-14946483,14946596-14946691,14946834-14946926,14947021-14947106,14947197-14947609,14947707-14947802,14948053-14948158,14948245-14948391	AT4G30610.1  CDS  gene_syn BRI1 SUPPRESSOR 1, BRS1, F17I23.50, F17I23_50, SCPL24, SERINE CARBOXYPEPTIDASE 24 PRECURSOR  gene BRS1  function Encodes a secreted glycosylated serine carboxypeptidase with broad substrate preference that is involved in brassinosteroid signalling via BRI1. It is proteolytically processed in vivo by a separate as yet unidentified protease.  go_component extracellular space|GO:0005615|16123046|IDA  go_process proteolysis|GO:0006508|16123046|IDA  go_process proteolysis|GO:0006508||ISS  go_process brassinosteroid mediated signaling|GO:0009742|11320207|IGI  go_function serine-type carboxypeptidase activity|GO:0004185|16123046|IDA  product BRS1 (BRI1 SUPPRESSOR 1); serine-type carboxypeptidase  note BRI1 SUPPRESSOR 1 (BRS1); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: brassinosteroid mediated signaling, proteolysis; LOCATED IN: extracellular space; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl22 (serine carboxypeptidase-like 22); serine-type carboxypeptidase (TAIR:AT2G24000.1); Has 2461 Blast hits to 2414 proteins in 234 species: Archae - 0; Bacteria - 43; Metazoa - 570; Fungi - 561; Plants - 975; Viruses - 0; Other Eukaryotes - 312 (source: NCBI BLink).  protein_id AT4G30610.1p  transcript_id AT4G30610.1  protein_id AT4G30610.1p  transcript_id AT4G30610.1  
At4g30620	chr4:014949975	0.0	C/14949975-14950035,14949636-14949775,14949422-14949522,14949275-14949314,14949042-14949113,14948886-14948942,14948724-14948795	AT4G30620.1  CDS  gene_syn F17I23.40, F17I23_40  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0133 (InterPro:IPR004401); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24020.1); Has 1303 Blast hits to 1303 proteins in 522 species: Archae - 0; Bacteria - 1050; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 224 (source: NCBI BLink).  protein_id AT4G30620.1p  transcript_id AT4G30620.1  protein_id AT4G30620.1p  transcript_id AT4G30620.1  
At4g30630	chr4:014951048	0.0	W/14951048-14951134,14951333-14951403,14951515-14951875,14951965-14952159	AT4G30630.1  CDS  gene_syn F17I23.30, F17I23_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57910.1); Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G30630.1p  transcript_id AT4G30630.1  protein_id AT4G30630.1p  transcript_id AT4G30630.1  
At4g30640	chr4:014952670	0.0	W/14952670-14953034,14953142-14953682	AT4G30640.1  CDS  gene_syn F17I23.20, F17I23_20  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product F-box family protein (FBL19)  note F-box family protein (FBL19); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: SKIP1 (SKP1 INTERACTING PARTNER 1); protein binding (TAIR:AT5G57900.1); Has 2460 Blast hits to 1408 proteins in 126 species: Archae - 0; Bacteria - 8; Metazoa - 1390; Fungi - 175; Plants - 749; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).  protein_id AT4G30640.1p  transcript_id AT4G30640.1  protein_id AT4G30640.1p  transcript_id AT4G30640.1  
At4g30650	chr4:014954403	0.0	W/14954403-14954492,14954567-14954698	AT4G30650.1  CDS  gene_syn F17I23.10, F17I23_10  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process response to cold|GO:0009409||ISS  go_process response to salt stress|GO:0009651|11351099|IEP  go_process hyperosmotic salinity response|GO:0042538||ISS  product hydrophobic protein, putative / low temperature and salt responsive protein, putative  note hydrophobic protein, putative / low temperature and salt responsive protein, putative; INVOLVED IN: response to salt stress, hyperosmotic salinity response, response to cold; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0057 (InterPro:IPR000612); BEST Arabidopsis thaliana protein match is: hydrophobic protein, putative / low temperature and salt responsive protein, putative (TAIR:AT4G30660.2); Has 838 Blast hits to 838 proteins in 286 species: Archae - 0; Bacteria - 373; Metazoa - 44; Fungi - 213; Plants - 182; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT4G30650.1p  transcript_id AT4G30650.1  protein_id AT4G30650.1p  transcript_id AT4G30650.1  
At4g30660	chr4:014955470	0.0	W/14955470-14955559,14955810-14955944	AT4G30660.1  CDS  gene_syn T10C21.10, T10C21_10  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process response to cold|GO:0009409||ISS  go_process hyperosmotic salinity response|GO:0042538||ISS  product hydrophobic protein, putative / low temperature and salt responsive protein, putative  note hydrophobic protein, putative / low temperature and salt responsive protein, putative; INVOLVED IN: hyperosmotic salinity response, response to cold; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0057 (InterPro:IPR000612); BEST Arabidopsis thaliana protein match is: hydrophobic protein, putative / low temperature and salt responsive protein, putative (TAIR:AT2G24040.1); Has 792 Blast hits to 792 proteins in 279 species: Archae - 0; Bacteria - 358; Metazoa - 42; Fungi - 194; Plants - 182; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT4G30660.1p  transcript_id AT4G30660.1  protein_id AT4G30660.1p  transcript_id AT4G30660.1  
At4g30660	chr4:014955470	0.0	W/14955470-14955559,14955810-14955944	AT4G30660.2  CDS  gene_syn T10C21.10, T10C21_10  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process response to cold|GO:0009409||ISS  go_process hyperosmotic salinity response|GO:0042538||ISS  product hydrophobic protein, putative / low temperature and salt responsive protein, putative  note hydrophobic protein, putative / low temperature and salt responsive protein, putative; INVOLVED IN: hyperosmotic salinity response, response to cold; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0057 (InterPro:IPR000612); BEST Arabidopsis thaliana protein match is: hydrophobic protein, putative / low temperature and salt responsive protein, putative (TAIR:AT2G24040.1).  protein_id AT4G30660.2p  transcript_id AT4G30660.2  protein_id AT4G30660.2p  transcript_id AT4G30660.2  
At4g30662	chr4:014956183	0.0	C/14956183-14956530	AT4G30662.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 12 Blast hits to 12 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G30662.1p  transcript_id AT4G30662.1  protein_id AT4G30662.1p  transcript_id AT4G30662.1  
At4g30670	chr4:014957597	0.0	C/14957597-14957905	AT4G30670.1  CDS  gene_syn T10C21.20, T10C21_20  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 10 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G30670.1p  transcript_id AT4G30670.1  protein_id AT4G30670.1p  transcript_id AT4G30670.1  
At4g30680	chr4:014959875	0.0	C/14959875-14960012,14958687-14959340	AT4G30680.1  CDS  gene_syn T10C21.30, T10C21_30  go_process biological_process|GO:0008150||ND  go_function translation initiation factor activity|GO:0003743||ISS  product MA3 domain-containing protein  note MA3 domain-containing protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891); BEST Arabidopsis thaliana protein match is: MIF4G domain-containing protein / MA3 domain-containing protein (TAIR:AT2G24050.1); Has 572 Blast hits to 433 proteins in 75 species: Archae - 0; Bacteria - 2; Metazoa - 288; Fungi - 4; Plants - 249; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT4G30680.1p  transcript_id AT4G30680.1  protein_id AT4G30680.1p  transcript_id AT4G30680.1  
At4g30690	chr4:014960742	0.0	W/14960742-14961016,14961103-14961142,14961224-14961283,14961361-14961413,14961509-14961558,14961673-14961706,14961811-14961883,14961963-14962055,14962161-14962328	AT4G30690.1  CDS  gene_syn T10C21.40, T10C21_40  go_component cell wall|GO:0005618|15593128|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process translational initiation|GO:0006413||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product translation initiation factor 3 (IF-3) family protein  note translation initiation factor 3 (IF-3) family protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cell wall, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor 3 (InterPro:IPR001288); BEST Arabidopsis thaliana protein match is: translation initiation factor 3 (IF-3) family protein (TAIR:AT2G24060.1); Has 5057 Blast hits to 5057 proteins in 1387 species: Archae - 0; Bacteria - 2592; Metazoa - 64; Fungi - 26; Plants - 43; Viruses - 0; Other Eukaryotes - 2332 (source: NCBI BLink).  protein_id AT4G30690.1p  transcript_id AT4G30690.1  protein_id AT4G30690.1p  transcript_id AT4G30690.1  
At4g30700	chr4:014962617	0.0	C/14962617-14964995	AT4G30700.1  CDS  gene_syn T10C21.50, T10C21_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: CRR22 (CHLORORESPIRATORY REDUCTION22); endonuclease (TAIR:AT1G11290.1); Has 14841 Blast hits to 5332 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 136; Fungi - 71; Plants - 14345; Viruses - 0; Other Eukaryotes - 289 (source: NCBI BLink).  protein_id AT4G30700.1p  transcript_id AT4G30700.1  protein_id AT4G30700.1p  transcript_id AT4G30700.1  
At4g30710	chr4:014966493	0.0	C/14966493-14967881,14966287-14966406,14966094-14966210,14965909-14966007,14965718-14965816,14965538-14965648	AT4G30710.2  CDS  gene_syn T10C21.60, T10C21_60  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF566 (InterPro:IPR007573); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24070.2); Has 8353 Blast hits to 3303 proteins in 314 species: Archae - 0; Bacteria - 1069; Metazoa - 2497; Fungi - 1158; Plants - 368; Viruses - 48; Other Eukaryotes - 3213 (source: NCBI BLink).  protein_id AT4G30710.2p  transcript_id AT4G30710.2  protein_id AT4G30710.2p  transcript_id AT4G30710.2  
At4g30710	chr4:014966493	0.0	C/14966493-14967881,14966287-14966406,14966094-14966210,14965918-14966007,14965718-14965825,14965538-14965648	AT4G30710.1  CDS  gene_syn T10C21.60, T10C21_60  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF566 (InterPro:IPR007573); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24070.2); Has 8358 Blast hits to 3317 proteins in 315 species: Archae - 0; Bacteria - 1057; Metazoa - 2503; Fungi - 1164; Plants - 366; Viruses - 48; Other Eukaryotes - 3220 (source: NCBI BLink).  protein_id AT4G30710.1p  transcript_id AT4G30710.1  protein_id AT4G30710.1p  transcript_id AT4G30710.1  
At4g30720	chr4:014975126	0.0	C/14975126-14975461,14974979-14975041,14974448-14974903,14974296-14974367,14974077-14974202,14973751-14973963,14973572-14973619,14973294-14973449,14973049-14973210,14972877-14972970,14972654-14972772,14972528-14972572,14972212-14972445	AT4G30720.1  CDS  gene_syn T10C21.70, T10C21_70  go_component chloroplast|GO:0009507|18431481|IDA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product electron carrier/ oxidoreductase  note electron carrier/ oxidoreductase; FUNCTIONS IN: electron carrier activity, oxidoreductase activity; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: FAD dependent oxidoreductase (InterPro:IPR006076), Adrenodoxin reductase (InterPro:IPR000759); Has 1337 Blast hits to 1337 proteins in 477 species: Archae - 76; Bacteria - 1054; Metazoa - 0; Fungi - 2; Plants - 16; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).  protein_id AT4G30720.1p  transcript_id AT4G30720.1  protein_id AT4G30720.1p  transcript_id AT4G30720.1  
At4g30730	chr4:014976418	0.0	C/14976418-14976732	AT4G30730.1  CDS  gene_syn T10C21.80, T10C21_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30750.1); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G30730.1p  transcript_id AT4G30730.1  protein_id AT4G30730.1p  transcript_id AT4G30730.1  
At4g30740	chr4:014979246	0.0	C/14979246-14979521	AT4G30740.1  CDS  gene_syn T10C21.90, T10C21_90  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30710.2); Has 29 Blast hits to 29 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G30740.1p  transcript_id AT4G30740.1  protein_id AT4G30740.1p  transcript_id AT4G30740.1  
At4g30750	chr4:014982227	0.0	C/14982227-14982269,14981855-14982100,14981410-14981765	AT4G30750.1  CDS  gene_syn T10C21.100, T10C21_100  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30730.1); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G30750.1p  transcript_id AT4G30750.1  protein_id AT4G30750.1p  transcript_id AT4G30750.1  
At4g30760	chr4:014982552	0.0	W/14982552-14982600,14982669-14982884,14982975-14983285	AT4G30760.1  CDS  gene_syn T10C21.110, T10C21_110  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62050.1); Has 78 Blast hits to 76 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G30760.1p  transcript_id AT4G30760.1  protein_id AT4G30760.1p  transcript_id AT4G30760.1  
At4g30760	chr4:014982552	0.0	W/14982552-14982600,14982669-14982884,14982978-14983285	AT4G30760.2  CDS  gene_syn T10C21.110, T10C21_110  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62050.1); Has 78 Blast hits to 76 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G30760.2p  transcript_id AT4G30760.2  protein_id AT4G30760.2p  transcript_id AT4G30760.2  
At4g30770	chr4:014986140	0.0	C/14986140-14986613	AT4G30770.1  CDS  gene_syn T10C21.120, T10C21_120  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; Has 18 Blast hits to 18 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G30770.1p  transcript_id AT4G30770.1  protein_id AT4G30770.1p  transcript_id AT4G30770.1  
At4g30780	chr4:014990523	0.0	W/14990523-14990663,14990837-14991151,14991236-14991409,14991493-14991599,14991686-14991987,14992125-14992855	AT4G30780.1  CDS  gene_syn T10C21.130, T10C21_130  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24100.1); Has 52 Blast hits to 52 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT4G30780.1p  transcript_id AT4G30780.1  protein_id AT4G30780.1p  transcript_id AT4G30780.1  
At4g30790	chr4:014996842	0.0	C/14996842-14997785,14995110-14996745,14994304-14994524,14993947-14994160,14993383-14993814	AT4G30790.1  CDS  gene_syn T10C21.140, T10C21_140  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27595.1); Has 7187 Blast hits to 5028 proteins in 406 species: Archae - 63; Bacteria - 402; Metazoa - 4154; Fungi - 571; Plants - 264; Viruses - 14; Other Eukaryotes - 1719 (source: NCBI BLink).  protein_id AT4G30790.1p  transcript_id AT4G30790.1  protein_id AT4G30790.1p  transcript_id AT4G30790.1  
At4g30800	chr4:015001216	0.0	W/15001216-15001227,15001343-15001383,15001466-15001566,15001853-15001997,15002079-15002168,15002302-15002392	AT4G30800.1  CDS  gene_syn T10C21.1  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S11 (RPS11B)  note 40S ribosomal protein S11 (RPS11B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S17 (InterPro:IPR000266); BEST Arabidopsis thaliana protein match is: EMB1080 (embryo defective 1080); structural constituent of ribosome (TAIR:AT3G48930.1); Has 1016 Blast hits to 1014 proteins in 353 species: Archae - 160; Bacteria - 205; Metazoa - 241; Fungi - 98; Plants - 98; Viruses - 0; Other Eukaryotes - 214 (source: NCBI BLink).  protein_id AT4G30800.1p  transcript_id AT4G30800.1  protein_id AT4G30800.1p  transcript_id AT4G30800.1  
At4g30810	chr4:015003474	0.0	W/15003474-15003741,15004134-15004241,15004331-15004426,15004514-15004606,15004687-15004772,15004863-15005126,15005201-15005334,15005434-15005529,15005637-15005742,15005829-15006017	AT4G30810.1  CDS  gene_syn F6I18.280, F6I18_280, scpl29, serine carboxypeptidase-like 29  gene scpl29  go_component vacuole|GO:0005773|15539469|IDA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl29 (serine carboxypeptidase-like 29); serine-type carboxypeptidase  note serine carboxypeptidase-like 29 (scpl29); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl26 (serine carboxypeptidase-like 26); serine-type carboxypeptidase (TAIR:AT2G35780.1); Has 2649 Blast hits to 2597 proteins in 302 species: Archae - 0; Bacteria - 178; Metazoa - 579; Fungi - 563; Plants - 967; Viruses - 0; Other Eukaryotes - 362 (source: NCBI BLink).  protein_id AT4G30810.1p  transcript_id AT4G30810.1  protein_id AT4G30810.1p  transcript_id AT4G30810.1  
At4g30820	chr4:015007144	0.0	W/15007144-15007211,15007602-15007675,15007755-15007858,15008000-15008065,15008154-15008378	AT4G30820.1  CDS  gene_syn F6I18.270, F6I18_270  go_component nucleus|GO:0005634||IEA  go_process cell cycle|GO:0007049||IEA  go_function molecular_function|GO:0003674||ND  product cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related  note cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cdk-activating kinase assembly factor (MAT1) (InterPro:IPR004575), Cdk-activating kinase assembly factor, MAT1 (InterPro:IPR015877); Has 255 Blast hits to 255 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 109; Fungi - 95; Plants - 28; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT4G30820.1p  transcript_id AT4G30820.1  protein_id AT4G30820.1p  transcript_id AT4G30820.1  
At4g30820	chr4:015007144	0.0	W/15007144-15007211,15007602-15007675,15007755-15007858,15008000-15008065,15008154-15008378	AT4G30820.2  CDS  gene_syn F6I18.270, F6I18_270  go_component nucleus|GO:0005634||IEA  go_process cell cycle|GO:0007049||IEA  go_function molecular_function|GO:0003674||ND  product cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related  note cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cdk-activating kinase assembly factor (MAT1) (InterPro:IPR004575), Cdk-activating kinase assembly factor, MAT1 (InterPro:IPR015877); Has 255 Blast hits to 255 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 109; Fungi - 95; Plants - 28; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT4G30820.2p  transcript_id AT4G30820.2  protein_id AT4G30820.2p  transcript_id AT4G30820.2  
At4g30820	chr4:015007144	0.0	W/15007144-15007211,15007602-15007675,15007755-15007858,15008000-15008065,15008154-15008378	AT4G30820.3  CDS  gene_syn F6I18.270, F6I18_270  go_component nucleus|GO:0005634||IEA  go_process cell cycle|GO:0007049||IEA  go_function molecular_function|GO:0003674||ND  product cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related  note cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cdk-activating kinase assembly factor (MAT1) (InterPro:IPR004575), Cdk-activating kinase assembly factor, MAT1 (InterPro:IPR015877); Has 255 Blast hits to 255 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 109; Fungi - 95; Plants - 28; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT4G30820.3p  transcript_id AT4G30820.3  protein_id AT4G30820.3p  transcript_id AT4G30820.3  
At4g30825	chr4:015009605	0.0	W/15009605-15012319	AT4G30825.1  CDS  go_component nucleus|GO:0005634||IEA  go_process cell cycle|GO:0007049||IEA  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Cdk-activating kinase assembly factor (MAT1) (InterPro:IPR004575); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G06920.1); Has 23479 Blast hits to 5551 proteins in 168 species: Archae - 5; Bacteria - 18; Metazoa - 386; Fungi - 372; Plants - 21690; Viruses - 0; Other Eukaryotes - 1008 (source: NCBI BLink).  protein_id AT4G30825.1p  transcript_id AT4G30825.1  protein_id AT4G30825.1p  transcript_id AT4G30825.1  
At4g30830	chr4:015015616	0.0	C/15015616-15016683,15015506-15015529	AT4G30830.1  CDS  gene_syn F6I18.260, F6I18_260  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: stem, inflorescence meristem, hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24140.1); Has 10851 Blast hits to 7519 proteins in 508 species: Archae - 87; Bacteria - 575; Metazoa - 5744; Fungi - 642; Plants - 436; Viruses - 36; Other Eukaryotes - 3331 (source: NCBI BLink).  protein_id AT4G30830.1p  transcript_id AT4G30830.1  protein_id AT4G30830.1p  transcript_id AT4G30830.1  
At4g30840	chr4:015019048	0.0	C/15019048-15019709,15018724-15018793,15018139-15018364,15017968-15018041,15017831-15017884	AT4G30840.1  CDS  gene_syn F6I18.250, F6I18_250  go_component chloroplast|GO:0009507|15028209|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product WD-40 repeat protein family  note WD-40 repeat protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); Has 130 Blast hits to 129 proteins in 60 species: Archae - 0; Bacteria - 4; Metazoa - 91; Fungi - 11; Plants - 19; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G30840.1p  transcript_id AT4G30840.1  protein_id AT4G30840.1p  transcript_id AT4G30840.1  
At4g30845	chr4:015019895	0.0	W/15019895-15020106,15020187-15020319	AT4G30845.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 8 Blast hits to 8 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G30845.1p  transcript_id AT4G30845.1  protein_id AT4G30845.1p  transcript_id AT4G30845.1  
At4g30850	chr4:015022052	0.0	C/15022052-15022278,15021879-15021977,15021703-15021781,15020540-15021211	AT4G30850.1  CDS  gene_syn F6I18.240, F6I18_240, HEPTAHELICAL TRANSMEMBRANE PROTEIN2, HHP2  gene HHP2  function heptahelical transmembrane protein homologous to human adiponectin receptors and progestin receptors  go_component integral to membrane|GO:0016021||IEA  go_process response to hormone stimulus|GO:0009725|16263907|IEP  go_process response to sucrose stimulus|GO:0009744|16263907|IEP  go_function receptor activity|GO:0004872|16263907|ISS  product HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2); receptor  note HEPTAHELICAL TRANSMEMBRANE PROTEIN2 (HHP2); FUNCTIONS IN: receptor activity; INVOLVED IN: response to hormone stimulus, response to sucrose stimulus; LOCATED IN: integral to membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Hly-III related (InterPro:IPR004254); BEST Arabidopsis thaliana protein match is: HHP3 (heptahelical protein 3); receptor (TAIR:AT2G24150.1); Has 1390 Blast hits to 1314 proteins in 231 species: Archae - 0; Bacteria - 162; Metazoa - 780; Fungi - 225; Plants - 111; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).  protein_id AT4G30850.1p  transcript_id AT4G30850.1  protein_id AT4G30850.1p  transcript_id AT4G30850.1  
At4g30850	chr4:015022052	0.0	C/15022052-15022278,15021879-15021977,15021703-15021781,15020540-15021211	AT4G30850.2  CDS  gene_syn F6I18.240, F6I18_240, HEPTAHELICAL TRANSMEMBRANE PROTEIN2, HHP2  gene HHP2  function heptahelical transmembrane protein homologous to human adiponectin receptors and progestin receptors  go_component integral to membrane|GO:0016021||IEA  go_process response to hormone stimulus|GO:0009725|16263907|IEP  go_process response to sucrose stimulus|GO:0009744|16263907|IEP  go_function receptor activity|GO:0004872|16263907|ISS  product HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2); receptor  note HEPTAHELICAL TRANSMEMBRANE PROTEIN2 (HHP2); FUNCTIONS IN: receptor activity; INVOLVED IN: response to hormone stimulus, response to sucrose stimulus; LOCATED IN: integral to membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Hly-III related (InterPro:IPR004254); BEST Arabidopsis thaliana protein match is: HHP3 (heptahelical protein 3); receptor (TAIR:AT2G24150.1); Has 1390 Blast hits to 1314 proteins in 231 species: Archae - 0; Bacteria - 162; Metazoa - 780; Fungi - 225; Plants - 111; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).  protein_id AT4G30850.2p  transcript_id AT4G30850.2  protein_id AT4G30850.2p  transcript_id AT4G30850.2  
At4g30860	chr4:015024546	0.0	W/15024546-15024899,15025210-15025356,15025607-15025771,15025883-15025909,15026086-15026200,15026300-15026393,15026480-15026573,15026660-15026738,15026827-15026998,15027084-15027164,15027262-15027427	AT4G30860.1  CDS  gene_syn ASH1-RELATED 3, ASHR3, F6I18.230, F6I18_230, SDG4, SET DOMAIN GROUP 4  gene SDG4  function Encodes a member of the trxG protein family. Contains a SET domain which is known to be involved in modification of histone tails by methylation. Interacts physically with AMS, but the implications of this interaction are unknown.Overexpression results in plieotrophic developmental defects.  go_component nucleus|GO:0005634|17978851|IDA  go_function histone methyltransferase activity|GO:0042054|17978851|IDA  product SDG4 (SET DOMAIN GROUP 4); histone methyltransferase  note SET DOMAIN GROUP 4 (SDG4); FUNCTIONS IN: histone methyltransferase activity; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), Zinc finger, PHD-type (InterPro:IPR001965), Post-SET zinc-binding region (InterPro:IPR003616), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), AWS (InterPro:IPR006560); BEST Arabidopsis thaliana protein match is: ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3); histone-lysine N-methyltransferase (TAIR:AT2G44150.1); Has 4315 Blast hits to 4153 proteins in 355 species: Archae - 2; Bacteria - 317; Metazoa - 1978; Fungi - 361; Plants - 575; Viruses - 0; Other Eukaryotes - 1082 (source: NCBI BLink).  protein_id AT4G30860.1p  transcript_id AT4G30860.1  protein_id AT4G30860.1p  transcript_id AT4G30860.1  
At4g30870	chr4:015028586	0.0	W/15028586-15028779,15029340-15029434,15029531-15029609,15029703-15029789,15029890-15030012,15030114-15030342,15030478-15030673,15030761-15030876,15030981-15031111,15031254-15031311,15031393-15031551,15031645-15031724,15031819-15032059,15032155-15032241,15032357-15032461	AT4G30870.1  CDS  gene_syn ARABIDOPSIS THALIANA MMS AND UV SENSITIVE 81, ATMUS81, F6I18.220, F6I18_220, MMS AND UV SENSITIVE 81, MUS81  gene MUS81  function Encodes an Arabidopsis homolog of the endonuclease MSU81. T-DNA insertion lines of AtMSU81 have a deficiency in homologous recombination in somatic cells but only after genotoxic stress. Crosses with a hyperrecombinogenic mutant of the AtRecQ4A helicase resulted in synthetic lethality in the double mutant.  go_component condensed nuclear chromosome|GO:0000794|18182028|IDA  go_process DNA repair|GO:0006281|16945961|IMP  go_process DNA repair|GO:0006281||ISS  go_process mitotic recombination|GO:0006312|16945961|IMP  go_process chiasma formation|GO:0051026|18182028|IGI  go_function nucleic acid binding|GO:0003676||ISS  go_function endonuclease activity|GO:0004519|16945961|ISS  go_function endonuclease activity|GO:0004519||ISS  product MUS81 (MMS AND UV SENSITIVE 81); endonuclease/ nucleic acid binding  note MMS AND UV SENSITIVE 81 (MUS81); FUNCTIONS IN: nucleic acid binding, endonuclease activity; INVOLVED IN: DNA repair, mitotic recombination, chiasma formation; LOCATED IN: condensed nuclear chromosome; EXPRESSED IN: stem, flower, leaf; EXPRESSED DURING: IL.00 inflorescence just visible; CONTAINS InterPro DOMAIN/s: DNA repair nuclease, XPF-type/Helicase (InterPro:IPR006166), Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), Restriction endonuclease, type II-like, core (InterPro:IPR011335); BEST Arabidopsis thaliana protein match is: DNA binding / endonuclease/ nuclease/ nucleic acid binding / protein binding (TAIR:AT5G39770.1); Has 469 Blast hits to 364 proteins in 135 species: Archae - 7; Bacteria - 2; Metazoa - 144; Fungi - 150; Plants - 20; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).  protein_id AT4G30870.1p  transcript_id AT4G30870.1  protein_id AT4G30870.1p  transcript_id AT4G30870.1  
At4g30872	chr4:015032978	0.0	C/15032978-15033256	AT4G30872.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G30872.1  
At4g30880	chr4:015035229	0.0	W/15035229-15035541,15035734-15035750	AT4G30880.1  CDS  gene_syn F6I18.210, F6I18_210  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: lipid binding (TAIR:AT4G33550.2); Has 58 Blast hits to 58 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G30880.1p  transcript_id AT4G30880.1  protein_id AT4G30880.1p  transcript_id AT4G30880.1  
At4g30890	chr4:015038811	0.0	C/15038811-15038825,15037812-15038501,15037533-15037717,15037179-15037432,15036960-15037105,15036667-15036843,15036383-15036571	AT4G30890.1  CDS  gene_syn F6I18.200, F6I18_200, UBIQUITIN-SPECIFIC PROTEASE 24, UBP24  gene UBP24  function Encodes a ubiquitin-specific protease.  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_function ubiquitin-specific protease activity|GO:0004843||ISS  product UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24); ubiquitin thiolesterase/ ubiquitin-specific protease  note UBIQUITIN-SPECIFIC PROTEASE 24 (UBP24); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: UBP15 (UBIQUITIN-SPECIFIC PROTEASE 15); ubiquitin-specific protease (TAIR:AT1G17110.1); Has 4954 Blast hits to 4376 proteins in 181 species: Archae - 0; Bacteria - 2; Metazoa - 2798; Fungi - 796; Plants - 430; Viruses - 3; Other Eukaryotes - 925 (source: NCBI BLink).  protein_id AT4G30890.1p  transcript_id AT4G30890.1  protein_id AT4G30890.1p  transcript_id AT4G30890.1  
At4g30890	chr4:015038811	0.0	C/15038811-15038825,15037812-15038501,15037533-15037717,15037179-15037432,15036960-15037105,15036667-15036843,15036383-15036571	AT4G30890.2  CDS  gene_syn F6I18.200, F6I18_200, UBIQUITIN-SPECIFIC PROTEASE 24, UBP24  gene UBP24  function Encodes a ubiquitin-specific protease.  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_function ubiquitin-specific protease activity|GO:0004843||ISS  product UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24); ubiquitin thiolesterase/ ubiquitin-specific protease  note UBIQUITIN-SPECIFIC PROTEASE 24 (UBP24); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: UBP15 (UBIQUITIN-SPECIFIC PROTEASE 15); ubiquitin-specific protease (TAIR:AT1G17110.1); Has 4954 Blast hits to 4376 proteins in 181 species: Archae - 0; Bacteria - 2; Metazoa - 2798; Fungi - 796; Plants - 430; Viruses - 3; Other Eukaryotes - 925 (source: NCBI BLink).  protein_id AT4G30890.2p  transcript_id AT4G30890.2  protein_id AT4G30890.2p  transcript_id AT4G30890.2  
At4g30900	chr4:015040021	0.0	W/15040021-15040162,15040396-15040437,15040963-15041045,15041132-15041233,15041349-15041563,15041751-15041845,15041932-15042203	AT4G30900.1  CDS  gene_syn F6I18.190, F6I18_190  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); Has 408 Blast hits to 408 proteins in 132 species: Archae - 4; Bacteria - 213; Metazoa - 1; Fungi - 69; Plants - 10; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).  protein_id AT4G30900.1p  transcript_id AT4G30900.1  protein_id AT4G30900.1p  transcript_id AT4G30900.1  
At4g30900	chr4:015040021	0.0	W/15040021-15040162,15040396-15040437,15040963-15041045,15041132-15041233,15041349-15041563,15041751-15041845,15041932-15042203	AT4G30900.2  CDS  gene_syn F6I18.190, F6I18_190  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); Has 408 Blast hits to 408 proteins in 132 species: Archae - 4; Bacteria - 213; Metazoa - 1; Fungi - 69; Plants - 10; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).  protein_id AT4G30900.2p  transcript_id AT4G30900.2  protein_id AT4G30900.2p  transcript_id AT4G30900.2  
At4g30910	chr4:015045018	0.0	C/15045018-15045248,15044421-15044835,15044133-15044327,15043796-15044021,15043579-15043705,15043408-15043503,15043261-15043338,15043115-15043175,15042844-15043031,15042621-15042749	AT4G30910.1  CDS  gene_syn F6I18.180, F6I18_180  go_component chloroplast|GO:0009507|15028209|IDA  go_process proteolysis|GO:0006508||IEA  go_process protein metabolic process|GO:0019538||IEA  go_function aminopeptidase activity|GO:0004177||IEA  go_function metalloexopeptidase activity|GO:0008235||IEA  go_function manganese ion binding|GO:0030145||IEA  go_process proteolysis|GO:0006508||ISS  go_function aminopeptidase activity|GO:0004177||ISS  product cytosol aminopeptidase family protein  note cytosol aminopeptidase family protein; FUNCTIONS IN: manganese ion binding, metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis, protein metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Peptidase M17, leucyl aminopeptidase, C-terminal (InterPro:IPR000819), Peptidase M17, leucyl aminopeptidase, N-terminal (InterPro:IPR008283), Peptidase M17, leucyl aminopeptidase (InterPro:IPR011356); BEST Arabidopsis thaliana protein match is: cytosol aminopeptidase family protein (TAIR:AT4G30920.1); Has 7370 Blast hits to 7367 proteins in 1221 species: Archae - 15; Bacteria - 3183; Metazoa - 615; Fungi - 19; Plants - 77; Viruses - 0; Other Eukaryotes - 3461 (source: NCBI BLink).  protein_id AT4G30910.1p  transcript_id AT4G30910.1  protein_id AT4G30910.1p  transcript_id AT4G30910.1  
At4g30920	chr4:015049071	0.0	C/15049071-15049304,15048437-15048851,15048134-15048328,15047784-15048009,15047571-15047697,15047400-15047495,15047227-15047304,15047076-15047136,15046815-15047002,15046589-15046720	AT4G30920.1  CDS  gene_syn F6I18.170, F6I18_170  go_component vacuole|GO:0005773|15215502|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process proteolysis|GO:0006508||IEA  go_process protein metabolic process|GO:0019538||IEA  go_function aminopeptidase activity|GO:0004177||IEA  go_function metalloexopeptidase activity|GO:0008235||IEA  go_function manganese ion binding|GO:0030145||IEA  go_process proteolysis|GO:0006508||ISS  go_function aminopeptidase activity|GO:0004177||ISS  product cytosol aminopeptidase family protein  note cytosol aminopeptidase family protein; FUNCTIONS IN: manganese ion binding, metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis, protein metabolic process; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Peptidase M17, leucyl aminopeptidase, C-terminal (InterPro:IPR000819), Peptidase M17, leucyl aminopeptidase, N-terminal (InterPro:IPR008283), Peptidase M17, leucyl aminopeptidase (InterPro:IPR011356); BEST Arabidopsis thaliana protein match is: cytosol aminopeptidase family protein (TAIR:AT4G30910.1); Has 7361 Blast hits to 7357 proteins in 1222 species: Archae - 15; Bacteria - 3183; Metazoa - 618; Fungi - 19; Plants - 75; Viruses - 0; Other Eukaryotes - 3451 (source: NCBI BLink).  protein_id AT4G30920.1p  transcript_id AT4G30920.1  protein_id AT4G30920.1p  transcript_id AT4G30920.1  
At4g30930	chr4:015051196	0.0	C/15051196-15051630,15051031-15051111,15050774-15050875,15050407-15050481,15050170-15050289	AT4G30930.1  CDS  gene_syn AT4G30925, NFD1, NUCLEAR FUSION DEFECTIVE 1  gene NFD1  function Encodes a ribosomal RPL21M protein that is localized to the mitochondrion and is involved in karyogamy during female gametophyte development and fertilization. Mutants display defects in both male and female gametophyte development (i.e.collapsed pollen and female gametophytes with unfused central cells).  go_function RNA binding|GO:0003723||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component mitochondrion|GO:0005739|16698901|IDA  go_component ribosome|GO:0005840||ISS  go_process karyogamy|GO:0000741|16698901|IMP  go_process translation|GO:0006412||ISS  go_process embryo sac development|GO:0009553|16698901|IMP  go_process pollen development|GO:0009555|16698901|IMP  go_process double fertilization forming a zygote and endosperm|GO:0009567|16698901|IMP  go_function structural constituent of ribosome|GO:0003735||ISS  product NFD1 (NUCLEAR FUSION DEFECTIVE 1); RNA binding / structural constituent of ribosome  note NUCLEAR FUSION DEFECTIVE 1 (NFD1); FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: double fertilization forming a zygote and endosperm, embryo sac development, karyogamy, translation, pollen development; LOCATED IN: mitochondrion, ribosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L21, conserved site (InterPro:IPR018258), Ribosomal protein L21 (InterPro:IPR001787); BEST Arabidopsis thaliana protein match is: 50S ribosomal protein L21, chloroplast / CL21 (RPL21) (TAIR:AT1G35680.1); Has 5236 Blast hits to 5161 proteins in 1499 species: Archae - 0; Bacteria - 2893; Metazoa - 280; Fungi - 63; Plants - 94; Viruses - 8; Other Eukaryotes - 1898 (source: NCBI BLink).  protein_id AT4G30930.1p  transcript_id AT4G30930.1  protein_id AT4G30930.1p  transcript_id AT4G30930.1  
At4g30935	chr4:015053728	0.0	C/15053728-15053908,15053580-15053635,15052603-15053258,15052359-15052517,15051916-15052264	AT4G30935.1  CDS  gene_syn ATWRKY32, F6I18.160, F6I18_160, WRKY32  gene WRKY32  function member of WRKY Transcription Factor; Group I  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY32; transcription factor  note WRKY32; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY4; DNA binding / transcription factor (TAIR:AT1G13960.2); Has 3295 Blast hits to 1791 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 39; Fungi - 13; Plants - 3209; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT4G30935.1p  transcript_id AT4G30935.1  protein_id AT4G30935.1p  transcript_id AT4G30935.1  
At4g30940	chr4:015055149	0.0	W/15055149-15056474	AT4G30940.1  CDS  gene_syn F6I18.150, F6I18_150  go_component voltage-gated potassium channel complex|GO:0008076||IEA  go_component membrane|GO:0016020||IEA  go_process potassium ion transport|GO:0006813||IEA  go_function voltage-gated potassium channel activity|GO:0005249||IEA  go_function protein binding|GO:0005515||IEA  go_component voltage-gated potassium channel complex|GO:0008076||ISS  go_component membrane|GO:0016020||ISS  go_process potassium ion transport|GO:0006813||ISS  go_function voltage-gated potassium channel activity|GO:0005249||ISS  product potassium channel tetramerisation domain-containing protein  note potassium channel tetramerisation domain-containing protein; FUNCTIONS IN: protein binding, voltage-gated potassium channel activity; INVOLVED IN: potassium ion transport; LOCATED IN: voltage-gated potassium channel complex, membrane; EXPRESSED IN: leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), BTB/POZ fold (InterPro:IPR011333), Potassium channel, voltage dependent, Kv, tetramerisation (InterPro:IPR003131), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: potassium channel tetramerisation domain-containing protein (TAIR:AT2G24240.1); Has 948 Blast hits to 933 proteins in 91 species: Archae - 0; Bacteria - 2; Metazoa - 800; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT4G30940.1p  transcript_id AT4G30940.1  protein_id AT4G30940.1p  transcript_id AT4G30940.1  
At4g30950	chr4:015059635	0.0	C/15059635-15059673,15059445-15059508,15058925-15059172,15058703-15058846,15058478-15058629,15058273-15058395,15057997-15058174,15057785-15057903,15057584-15057698,15057278-15057442	AT4G30950.1  CDS  gene_syn F6I18.140, F6I18_140, FAD6, FADC, FATTY ACID DESATURASE 6, FATTY ACID DESATURASE C, OMEGA-6 FATTY ACID DESATURASE, OMEGA-6 FATTY ACID DESATURASE, CHLOROPLAST PRECURSOR, SFD4, STEAROYL DESATURASE DEFICIENCY 4  gene FAD6  function Chloroplastic enzyme responsible for the synthesis of 16:2 and 18:2 fatty acids from galactolipids, sulpholipids and phosphatidylglycerol. Uses ferredoxin as electron donor. Gene mutation resulted in reduced level of unsaturated fatty acids leading to susceptibility to photoinhibition.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast|GO:0009507|8754681|NAS  go_process fatty acid biosynthetic process|GO:0006633|14507997|TAS  go_process photoinhibition|GO:0010205|12068126|IMP  go_function omega-6 fatty acid desaturase activity|GO:0045485|7846158|IGI  product FAD6 (FATTY ACID DESATURASE 6); omega-6 fatty acid desaturase  note FATTY ACID DESATURASE 6 (FAD6); FUNCTIONS IN: omega-6 fatty acid desaturase activity; INVOLVED IN: photoinhibition, fatty acid biosynthetic process; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: FAD8 (FATTY ACID DESATURASE 8); omega-3 fatty acid desaturase (TAIR:AT5G05580.1); Has 2399 Blast hits to 2392 proteins in 520 species: Archae - 0; Bacteria - 897; Metazoa - 55; Fungi - 251; Plants - 714; Viruses - 0; Other Eukaryotes - 482 (source: NCBI BLink).  protein_id AT4G30950.1p  transcript_id AT4G30950.1  protein_id AT4G30950.1p  transcript_id AT4G30950.1  
At4g30960	chr4:015067400	0.0	W/15067400-15068725	AT4G30960.1  CDS  gene_syn ATCIPK6, CBL-INTERACTING PROTEIN KINASE 6, CIPK6, F6I18.130, F6I18_130, SIP3, SNF1-RELATED PROTEIN KINASE 3.14, SNRK3.14, SOS3-INTERACTING PROTEIN 3  gene SIP3  function Encodes CBL-interacting protein kinase 6 (CIPK6). Required for development and salt tolerance.  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275|19187042|IMP  go_process response to water deprivation|GO:0009414|19187042|IEP  go_process response to abiotic stimulus|GO:0009628|19187042|IMP  go_process response to salt stress|GO:0009651|19187042|IEP  go_process basipetal auxin transport|GO:0010540|19187042|IMP  go_process hyperosmotic salinity response|GO:0042538|19187042|IDA  go_function kinase activity|GO:0016301||ISS  product SIP3 (SOS3-INTERACTING PROTEIN 3); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note SOS3-INTERACTING PROTEIN 3 (SIP3); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: in 6 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CIPK20 (CBL-INTERACTING PROTEIN KINASE 20); kinase/ protein serine/threonine kinase (TAIR:AT5G45820.1); Has 94557 Blast hits to 92985 proteins in 3130 species: Archae - 70; Bacteria - 8631; Metazoa - 40445; Fungi - 8817; Plants - 17887; Viruses - 478; Other Eukaryotes - 18229 (source: NCBI BLink).  protein_id AT4G30960.1p  transcript_id AT4G30960.1  protein_id AT4G30960.1p  transcript_id AT4G30960.1  
At4g30970	chr4:015074529	0.0	C/15074529-15074588,15074088-15074242,15070923-15071067,15069266-15069310	AT4G30970.1  CDS  gene_syn F6I18.120, F6I18_120  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G30970.1p  transcript_id AT4G30970.1  protein_id AT4G30970.1p  transcript_id AT4G30970.1  
At4g30972	chr4:015074945	0.0	W/15074945-15075024	AT4G30972.1  miRNA  gene_syn MICRORNA 156B, MIR156B  gene MIR156B  function Encodes a microRNA that targets several SPL family members, including SPL3,4, and 5. By regulating the expression of SPL3 (and probably also SPL4 and SPL5), this microRNA regulates vegetative phase change. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGACAGAAGAGAGUGAGCAC  go_process gene silencing by miRNA|GO:0035195|15851028|IDA  product MIR156B (MICRORNA 156B); miRNA  transcript_id AT4G30972.1  
At4g30975	chr4:015075042	0.0	W/15075042-15077572	AT4G30975.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G30975.1  
At4g30980	chr4:015081310	0.0	C/15081310-15081606,15081052-15081192,15080869-15080934,15080459-15080524,15080132-15080188,15079489-15079794	AT4G30980.1  CDS  gene_syn F6I18.110, F6I18_110  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT2G24260.1); Has 1879 Blast hits to 1879 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 24; Plants - 1766; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G30980.1p  transcript_id AT4G30980.1  protein_id AT4G30980.1p  transcript_id AT4G30980.1  
At4g30990	chr4:015084456	0.0	W/15084456-15084524,15084691-15084816,15085340-15085497,15085833-15085877,15086372-15086450,15086542-15086615,15086867-15086973,15087070-15087243,15087651-15087854,15087993-15088191,15088276-15088350,15088437-15088771,15089013-15089196,15089292-15089505,15089638-15089977,15090170-15090359,15090440-15090535,15090718-15090967,15091056-15091508,15091640-15092100,15092184-15092320,15092405-15092586,15092679-15092826,15092907-15092971,15093287-15093412,15093667-15093732,15093810-15095005,15095081-15095536,15095608-15095899,15096154-15096387,15096568-15096630,15096773-15097291,15097378-15097510,15097598-15097860	AT4G30990.2  CDS  gene_syn F6I18.5  go_function binding|GO:0005488||IEA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; CONTAINS InterPro DOMAIN/s: Down-regulated in metastasis (InterPro:IPR011430), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36810.1).  protein_id AT4G30990.2p  transcript_id AT4G30990.2  protein_id AT4G30990.2p  transcript_id AT4G30990.2  
At4g30990	chr4:015084456	0.0	W/15084456-15084524,15084691-15084816,15085340-15085497,15085833-15085877,15086372-15086450,15086542-15086615,15086867-15086973,15087070-15087243,15087651-15087854,15087993-15088191,15088276-15088350,15088437-15088771,15089013-15089196,15089292-15089505,15089638-15089977,15090170-15090359,15090440-15090535,15090718-15090967,15091056-15091508,15091640-15092100,15092184-15092320,15092405-15092586,15092679-15092826,15092907-15092971,15093287-15093412,15093667-15093732,15093810-15095005,15095081-15095536,15095608-15095899,15096154-15096387,15096773-15097291,15097378-15097510,15097598-15097860	AT4G30990.1  CDS  gene_syn F6I18.5  go_function binding|GO:0005488||IEA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; CONTAINS InterPro DOMAIN/s: Down-regulated in metastasis (InterPro:IPR011430), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36810.1); Has 198 Blast hits to 195 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 80; Fungi - 74; Plants - 18; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT4G30990.1p  transcript_id AT4G30990.1  protein_id AT4G30990.1p  transcript_id AT4G30990.1  
At4g30993	chr4:015098201	0.0	W/15098201-15098398,15098559-15098642,15098743-15098777,15098865-15098967,15099066-15099151,15099299-15099410,15099504-15099616,15099706-15099754,15099858-15099935	AT4G30993.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 17 Blast hits to 16 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G30993.2p  transcript_id AT4G30993.2  protein_id AT4G30993.2p  transcript_id AT4G30993.2  
At4g30993	chr4:015098201	0.0	W/15098201-15098398,15098559-15098642,15098743-15098777,15098865-15098967,15099066-15099151,15099299-15099422	AT4G30993.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 16 Blast hits to 16 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G30993.1p  transcript_id AT4G30993.1  protein_id AT4G30993.1p  transcript_id AT4G30993.1  
At4g30996	chr4:015101464	0.0	W/15101464-15101656,15101954-15101977,15102160-15102461	AT4G30996.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1068 (InterPro:IPR010471); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24290.1); Has 51 Blast hits to 51 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G30996.1p  transcript_id AT4G30996.1  protein_id AT4G30996.1p  transcript_id AT4G30996.1  
At4g31000	chr4:015103402	0.0	W/15103402-15103499,15103726-15103801,15103902-15103960,15104035-15104519,15104625-15104785,15104871-15105074,15105194-15105799	AT4G31000.1  CDS  gene_syn F6I18.90, F6I18_90  go_function calmodulin binding|GO:0005516|11782485|ISS  product calmodulin-binding protein  note calmodulin-binding protein; FUNCTIONS IN: calmodulin binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Calmodulin binding protein-like (InterPro:IPR012416); BEST Arabidopsis thaliana protein match is: calmodulin-binding protein (TAIR:AT2G24300.2); Has 202 Blast hits to 178 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G31000.1p  transcript_id AT4G31000.1  protein_id AT4G31000.1p  transcript_id AT4G31000.1  
At4g31010	chr4:015106708	0.0	W/15106708-15107254,15107466-15107593,15107688-15107913,15108000-15108127,15108258-15108446	AT4G31010.1  CDS  gene_syn F6I18.80, F6I18_80  go_component mitochondrion|GO:0005739||IEA  go_function RNA binding|GO:0003723||IEA  go_process biological_process|GO:0008150||ND  product RNA binding  note RNA binding; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA binding (TAIR:AT5G54890.1); Has 165 Blast hits to 146 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 165; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G31010.1p  transcript_id AT4G31010.1  protein_id AT4G31010.1p  transcript_id AT4G31010.1  
At4g31010	chr4:015106708	0.0	W/15106708-15107254,15107466-15107593,15107688-15108038	AT4G31010.2  CDS  gene_syn F6I18.80, F6I18_80  go_component mitochondrion|GO:0005739||IEA  go_function RNA binding|GO:0003723||IEA  go_process biological_process|GO:0008150||ND  product RNA binding  note RNA binding; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA binding (TAIR:AT5G54890.1); Has 159 Blast hits to 146 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 159; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G31010.2p  transcript_id AT4G31010.2  protein_id AT4G31010.2p  transcript_id AT4G31010.2  
At4g31020	chr4:015109778	0.0	C/15109778-15110079,15109663-15109699,15109322-15109558,15109180-15109227,15108832-15109092	AT4G31020.1  CDS  gene_syn F6I18.70, F6I18_70  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24320.1); Has 2991 Blast hits to 2989 proteins in 479 species: Archae - 4; Bacteria - 698; Metazoa - 537; Fungi - 129; Plants - 152; Viruses - 6; Other Eukaryotes - 1465 (source: NCBI BLink).  protein_id AT4G31020.1p  transcript_id AT4G31020.1  protein_id AT4G31020.1p  transcript_id AT4G31020.1  
At4g31020	chr4:015109778	0.0	C/15109778-15110079,15109663-15109699,15109322-15109558,15109180-15109227,15108832-15109092	AT4G31020.2  CDS  gene_syn F6I18.70, F6I18_70  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24320.1); Has 2991 Blast hits to 2989 proteins in 479 species: Archae - 4; Bacteria - 698; Metazoa - 537; Fungi - 129; Plants - 152; Viruses - 6; Other Eukaryotes - 1465 (source: NCBI BLink).  protein_id AT4G31020.2p  transcript_id AT4G31020.2  protein_id AT4G31020.2p  transcript_id AT4G31020.2  
At4g31030	chr4:015111486	0.0	C/15111486-15111599,15111217-15111237	AT4G31030.1  CDS  gene_syn F6I18.60, F6I18_60  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G31030.1p  transcript_id AT4G31030.1  protein_id AT4G31030.1p  transcript_id AT4G31030.1  
At4g31040	chr4:015113243	0.0	C/15113243-15113881,15113018-15113103,15112744-15112917,15112493-15112607,15112278-15112375,15111998-15112133,15111811-15111879	AT4G31040.1  CDS  gene_syn F6I18.50, F6I18_50  go_component chloroplast|GO:0009507||IEA  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  product proton extrusion protein-related  note proton extrusion protein-related; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CemA (InterPro:IPR004282); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATCG00530.1); Has 625 Blast hits to 625 proteins in 222 species: Archae - 0; Bacteria - 116; Metazoa - 0; Fungi - 4; Plants - 455; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT4G31040.1p  transcript_id AT4G31040.1  protein_id AT4G31040.1p  transcript_id AT4G31040.1  
At4g31050	chr4:015114345	0.0	W/15114345-15114475,15114561-15114825,15114912-15115062,15115154-15115443	AT4G31050.1  CDS  gene_syn F6I18.40, F6I18_40  go_process protein modification process|GO:0006464||IEA  go_process lipoate biosynthetic process|GO:0009107||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process protein modification process|GO:0006464||ISS  go_function lipoyltransferase activity|GO:0017118||ISS  product lipoyltransferase (LIP2p)  note lipoyltransferase (LIP2p); FUNCTIONS IN: lipoyltransferase activity, catalytic activity; INVOLVED IN: protein modification process, lipoate biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipoate-protein ligase B (InterPro:IPR000544), Biotin/lipoate A/B protein ligase (InterPro:IPR004143); BEST Arabidopsis thaliana protein match is: lipoyltransferase, putative (TAIR:AT1G47580.1); Has 4361 Blast hits to 4361 proteins in 1041 species: Archae - 13; Bacteria - 1912; Metazoa - 80; Fungi - 87; Plants - 51; Viruses - 0; Other Eukaryotes - 2218 (source: NCBI BLink).  protein_id AT4G31050.1p  transcript_id AT4G31050.1  protein_id AT4G31050.1p  transcript_id AT4G31050.1  
At4g31060	chr4:015116896	0.0	W/15116896-15117459	AT4G31060.1  CDS  gene_syn F6I18.30, F6I18_30  function encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT1G19210.1); Has 3511 Blast hits to 3485 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3505; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G31060.1p  transcript_id AT4G31060.1  protein_id AT4G31060.1p  transcript_id AT4G31060.1  
At4g31070	chr4:015118696	0.0	C/15118696-15120537	AT4G31070.1  CDS  gene_syn F6I18.20, F6I18_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: EMB2758 (embryo defective 2758) (TAIR:AT4G33990.1); Has 13746 Blast hits to 4620 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 103; Fungi - 39; Plants - 13356; Viruses - 0; Other Eukaryotes - 248 (source: NCBI BLink).  protein_id AT4G31070.1p  transcript_id AT4G31070.1  protein_id AT4G31070.1p  transcript_id AT4G31070.1  
At4g31075	chr4:015120650	0.0	W/15120650-15120722	AT4G31075.1  tRNA  gene_syn 67182.TRNA-ARG-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: TCT)  transcript_id AT4G31075.1  
At4g31080	chr4:015121186	0.0	W/15121186-15121476,15121559-15121703,15121799-15121908,15122298-15122727,15122819-15123072	AT4G31080.1  CDS  gene_syn F6I18.10, F6I18_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24330.1); Has 251 Blast hits to 245 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 120; Fungi - 75; Plants - 53; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G31080.1p  transcript_id AT4G31080.1  protein_id AT4G31080.1p  transcript_id AT4G31080.1  
At4g31100	chr4:015123862	0.0	W/15123862-15124867,15124985-15125095,15125183-15126426	AT4G31100.1  CDS  gene_syn F6E21.20, F6E21_20  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product wall-associated kinase, putative  note wall-associated kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695), Protein kinase, ATP binding site (InterPro:IPR017441), EGF-like calcium-binding, conserved site (InterPro:IPR018097), Protein kinase, core (InterPro:IPR000719), EGF calcium-binding (InterPro:IPR013091), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: kinase (TAIR:AT4G31110.1); Has 88753 Blast hits to 86493 proteins in 3079 species: Archae - 48; Bacteria - 7487; Metazoa - 40299; Fungi - 6744; Plants - 18906; Viruses - 456; Other Eukaryotes - 14813 (source: NCBI BLink).  protein_id AT4G31100.1p  transcript_id AT4G31100.1  protein_id AT4G31100.1p  transcript_id AT4G31100.1  
At4g31110	chr4:015127257	0.0	W/15127257-15128289,15128433-15128543,15128643-15129880	AT4G31110.1  CDS  gene_syn F6E21.30, F6E21_30  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function kinase activity|GO:0016301||ISS  product kinase  note kinase; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695), Protein kinase, ATP binding site (InterPro:IPR017441), EGF-like calcium-binding, conserved site (InterPro:IPR018097), Protein kinase, core (InterPro:IPR000719), EGF calcium-binding (InterPro:IPR013091), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: wall-associated kinase, putative (TAIR:AT4G31100.1); Has 87805 Blast hits to 86057 proteins in 3063 species: Archae - 46; Bacteria - 7445; Metazoa - 39375; Fungi - 6781; Plants - 18877; Viruses - 456; Other Eukaryotes - 14825 (source: NCBI BLink).  protein_id AT4G31110.1p  transcript_id AT4G31110.1  protein_id AT4G31110.1p  transcript_id AT4G31110.1  
At4g31115	chr4:015130243	0.0	W/15130243-15130346,15130419-15130652,15130947-15131055,15131148-15131193,15131277-15131362,15131584-15131642,15131733-15131847	AT4G31115.1  CDS  product unknown protein  note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04440.1); Has 127 Blast hits to 127 proteins in 28 species: Archae - 0; Bacteria - 38; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT4G31115.1p  transcript_id AT4G31115.1  protein_id AT4G31115.1p  transcript_id AT4G31115.1  
At4g31115	chr4:015130243	0.0	W/15130243-15130652,15130947-15131055,15131148-15131193,15131277-15131362,15131584-15131642,15131733-15131847	AT4G31115.2  CDS  product unknown protein  note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04440.1); Has 127 Blast hits to 127 proteins in 28 species: Archae - 0; Bacteria - 38; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT4G31115.2p  transcript_id AT4G31115.2  protein_id AT4G31115.2p  transcript_id AT4G31115.2  
At4g31120	chr4:015136428	0.0	C/15136428-15136568,15136198-15136315,15135997-15136106,15135823-15135912,15135623-15135688,15135330-15135409,15135162-15135237,15134989-15135075,15134812-15134872,15134569-15134660,15134422-15134457,15134232-15134300,15133966-15134034,15133804-15133857,15133650-15133724,15133446-15133538,15133257-15133360,15133111-15133159,15132947-15133033,15132725-15132830,15132538-15132629	AT4G31120.2  CDS  gene_syn ATPRMT5, F6E21.40, F6E21_40, PRMT5, PROTEIN ARGININE METHYLTRANSFERASE 5, SHK1 BINDING PROTEIN 1, SKB1  gene SKB1  function Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification.  go_component cytoplasm|GO:0005737||IEA  go_process regulation of flower development|GO:0009909|17363895|IMP  go_process positive regulation of vernalization response|GO:0010220|18178621|IMP  go_function protein methyltransferase activity|GO:0008276|17363895|IDA  go_function protein methyltransferase activity|GO:0008276||ISS  product SKB1 (SHK1 BINDING PROTEIN 1); protein methyltransferase  note PROTEIN ARGININE METHYLTRANSFERASE 5 (PRMT5); FUNCTIONS IN: protein methyltransferase activity; INVOLVED IN: positive regulation of vernalization response, regulation of flower development; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Skb1 methyltransferase (InterPro:IPR007857); Has 700 Blast hits to 687 proteins in 168 species: Archae - 5; Bacteria - 21; Metazoa - 383; Fungi - 99; Plants - 82; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT4G31120.2p  transcript_id AT4G31120.2  protein_id AT4G31120.2p  transcript_id AT4G31120.2  
At4g31120	chr4:015136428	0.0	C/15136428-15136568,15136198-15136315,15135997-15136106,15135823-15135912,15135623-15135688,15135330-15135409,15135162-15135237,15134989-15135075,15134812-15134872,15134569-15134660,15134422-15134457,15134232-15134300,15133966-15134034,15133804-15133857,15133650-15133724,15133446-15133538,15133257-15133360,15133111-15133159,15132947-15133033,15132725-15132830,15132542-15132629,15132354-15132447,15132185-15132268	AT4G31120.1  CDS  gene_syn ATPRMT5, F6E21.40, F6E21_40, PRMT5, PROTEIN ARGININE METHYLTRANSFERASE 5, SHK1 BINDING PROTEIN 1, SKB1  gene SKB1  function Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification.  go_component cytoplasm|GO:0005737||IEA  go_process regulation of flower development|GO:0009909|17363895|IMP  go_process positive regulation of vernalization response|GO:0010220|18178621|IMP  go_function protein methyltransferase activity|GO:0008276|17363895|IDA  go_function protein methyltransferase activity|GO:0008276||ISS  product SKB1 (SHK1 BINDING PROTEIN 1); protein methyltransferase  note SHK1 BINDING PROTEIN 1 (SKB1); FUNCTIONS IN: protein methyltransferase activity; INVOLVED IN: positive regulation of vernalization response, regulation of flower development; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Skb1 methyltransferase (InterPro:IPR007857); Has 709 Blast hits to 696 proteins in 169 species: Archae - 7; Bacteria - 21; Metazoa - 385; Fungi - 101; Plants - 82; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).  protein_id AT4G31120.1p  transcript_id AT4G31120.1  protein_id AT4G31120.1p  transcript_id AT4G31120.1  
At4g31130	chr4:015138376	0.0	C/15138376-15138465,15137564-15137778,15137159-15137441	AT4G31130.1  CDS  gene_syn F6E21.50, F6E21_50  go_component plasma membrane|GO:0005886|14506206|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); Has 47 Blast hits to 46 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G31130.1p  transcript_id AT4G31130.1  protein_id AT4G31130.1p  transcript_id AT4G31130.1  
At4g31136	chr4:015140459	0.0	W/15140459-15140569	AT4G31136.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G31136.1p  transcript_id AT4G31136.1  protein_id AT4G31136.1p  transcript_id AT4G31136.1  
At4g31140	chr4:015141581	0.0	W/15141581-15141924,15142078-15143188	AT4G31140.1  CDS  gene_syn F6E21.60, F6E21_60  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component anchored to plasma membrane|GO:0046658|12805588|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, vacuole, anchored to membrane, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT5G58090.1); Has 1734 Blast hits to 1681 proteins in 126 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 29; Plants - 1695; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G31140.1p  transcript_id AT4G31140.1  protein_id AT4G31140.1p  transcript_id AT4G31140.1  
At4g31150	chr4:015145185	0.0	C/15145185-15145469,15145019-15145081,15144869-15144908,15144720-15144784,15144493-15144609,15144189-15144317,15144012-15144092,15143907-15143918	AT4G31150.2  CDS  gene_syn F6E21.70, F6E21_70  go_process DNA repair|GO:0006281||IEA  go_function endonuclease activity|GO:0004519||IEA  go_component cellular_component|GO:0005575||ND  go_function endonuclease activity|GO:0004519||ISS  product endonuclease V family protein  note endonuclease V family protein; FUNCTIONS IN: endonuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease V (InterPro:IPR007581); Has 791 Blast hits to 791 proteins in 366 species: Archae - 97; Bacteria - 529; Metazoa - 66; Fungi - 5; Plants - 17; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT4G31150.2p  transcript_id AT4G31150.2  protein_id AT4G31150.2p  transcript_id AT4G31150.2  
At4g31150	chr4:015145519	0.0	C/15145519-15145583,15145185-15145446,15145019-15145081,15144869-15144908,15144720-15144784,15144493-15144609,15144189-15144317,15144012-15144092,15143907-15143918	AT4G31150.1  CDS  gene_syn F6E21.70, F6E21_70  go_process DNA repair|GO:0006281||IEA  go_function endonuclease activity|GO:0004519||IEA  go_component cellular_component|GO:0005575||ND  go_function endonuclease activity|GO:0004519||ISS  product endonuclease V family protein  note endonuclease V family protein; FUNCTIONS IN: endonuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease V (InterPro:IPR007581); Has 791 Blast hits to 791 proteins in 366 species: Archae - 97; Bacteria - 529; Metazoa - 66; Fungi - 5; Plants - 17; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT4G31150.1p  transcript_id AT4G31150.1  protein_id AT4G31150.1p  transcript_id AT4G31150.1  
At4g31160	chr4:015145936	0.0	W/15145936-15146192,15146282-15146357,15146439-15146555,15146642-15146802,15146902-15147637,15147749-15147837,15147939-15148332,15148441-15149010,15149083-15149265,15149363-15149815,15149908-15150018,15150172-15151971,15152235-15152939	AT4G31160.1  CDS  gene_syn DCAF1, DDB1-CUL4 ASSOCIATED FACTOR 1, F6E21.80, F6E21_80  gene DCAF1  function Encodes a DCAF/DWD protein capable of interacting with DDB1 and associating with CUL4, likely as part of a nuclear ubiquitin ligase complex. DCAF1 appears to be required for plant embryogenesis and to affect several other developmental processes including leaf, shoot, and flower development.  go_component nucleus|GO:0005634|18552200|IDA  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|IPI  go_process embryonic development ending in seed dormancy|GO:0009793|18552200|IMP  go_process flower development|GO:0009908|18552200|IMP  go_process fruit development|GO:0010154|18552200|IMP  go_process leaf development|GO:0048366|18552200|IMP  go_process shoot development|GO:0048367|18552200|IMP  go_process phyllome development|GO:0048827|18552200|IMP  go_function nucleotide binding|GO:0000166||ISS  product DCAF1 (DDB1-CUL4 ASSOCIATED FACTOR 1); nucleotide binding  note DDB1-CUL4 ASSOCIATED FACTOR 1 (DCAF1); FUNCTIONS IN: nucleotide binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), LisH dimerisation motif, subgroup (InterPro:IPR013720), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594); Has 34486 Blast hits to 9850 proteins in 613 species: Archae - 126; Bacteria - 17420; Metazoa - 5315; Fungi - 2983; Plants - 1032; Viruses - 438; Other Eukaryotes - 7172 (source: NCBI BLink).  protein_id AT4G31160.1p  transcript_id AT4G31160.1  protein_id AT4G31160.1p  transcript_id AT4G31160.1  
At4g31170	chr4:015153948	0.0	C/15153948-15154846,15153499-15153838	AT4G31170.1  CDS  gene_syn F6E21.90, F6E21_90  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), ATMRK serine/threonine protein kinase-like (InterPro:IPR015783), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: serine/threonine/tyrosine kinase, putative (TAIR:AT2G24360.1); Has 96715 Blast hits to 94992 proteins in 3539 species: Archae - 71; Bacteria - 8481; Metazoa - 43124; Fungi - 8048; Plants - 19197; Viruses - 488; Other Eukaryotes - 17306 (source: NCBI BLink).  protein_id AT4G31170.1p  transcript_id AT4G31170.1  protein_id AT4G31170.1p  transcript_id AT4G31170.1  
At4g31170	chr4:015153948	0.0	C/15153948-15154846,15153499-15153838	AT4G31170.2  CDS  gene_syn F6E21.90, F6E21_90  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), ATMRK serine/threonine protein kinase-like (InterPro:IPR015783), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: serine/threonine/tyrosine kinase, putative (TAIR:AT2G24360.1); Has 96715 Blast hits to 94992 proteins in 3539 species: Archae - 71; Bacteria - 8481; Metazoa - 43124; Fungi - 8048; Plants - 19197; Viruses - 488; Other Eukaryotes - 17306 (source: NCBI BLink).  protein_id AT4G31170.2p  transcript_id AT4G31170.2  protein_id AT4G31170.2p  transcript_id AT4G31170.2  
At4g31170	chr4:015153948	0.0	C/15153948-15154846,15153499-15153838	AT4G31170.3  CDS  gene_syn F6E21.90, F6E21_90  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), ATMRK serine/threonine protein kinase-like (InterPro:IPR015783), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: serine/threonine/tyrosine kinase, putative (TAIR:AT2G24360.1); Has 96715 Blast hits to 94992 proteins in 3539 species: Archae - 71; Bacteria - 8481; Metazoa - 43124; Fungi - 8048; Plants - 19197; Viruses - 488; Other Eukaryotes - 17306 (source: NCBI BLink).  protein_id AT4G31170.3p  transcript_id AT4G31170.3  protein_id AT4G31170.3p  transcript_id AT4G31170.3  
At4g31180	chr4:015156696	0.0	W/15156696-15157253,15157342-15157452,15157594-15157707,15157916-15158206,15158290-15158400,15158484-15158537,15158619-15158698,15158825-15158940,15159032-15159146,15159236-15159362	AT4G31180.1  CDS  gene_syn F6E21.100, F6E21_100  go_component cytoplasm|GO:0005737||IEA  go_component chloroplast|GO:0009507||IEA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function aspartate-tRNA ligase activity|GO:0004815||IEA  go_function ATP binding|GO:0005524||IEA  go_component cytoplasm|GO:0005737||ISS  go_process aspartyl-tRNA aminoacylation|GO:0006422||ISS  go_function aspartate-tRNA ligase activity|GO:0004815||ISS  go_function ATP binding|GO:0005524||ISS  product aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative  note aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative; FUNCTIONS IN: aspartate-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, nucleic acid binding, ATP binding; INVOLVED IN: response to cadmium ion, aspartyl-tRNA aminoacylation; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aspartyl-tRNA synthetase, class IIb, archea/euk type (InterPro:IPR004523), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Aminoacyl-tRNA synthetase, class II, conserved region (InterPro:IPR006195), Aspartyl-tRNA synthetase, class IIb (InterPro:IPR002312), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D, K and N) (InterPro:IPR004364), Aminoacyl-tRNA synthetase, class II (D, K and N)-like (InterPro:IPR018150); BEST Arabidopsis thaliana protein match is: aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative (TAIR:AT4G26870.1); Has 17233 Blast hits to 14062 proteins in 1714 species: Archae - 297; Bacteria - 9930; Metazoa - 655; Fungi - 618; Plants - 225; Viruses - 0; Other Eukaryotes - 5508 (source: NCBI BLink).  protein_id AT4G31180.1p  transcript_id AT4G31180.1  protein_id AT4G31180.1p  transcript_id AT4G31180.1  
At4g31180	chr4:015156696	0.0	W/15156696-15157253,15157342-15157452,15157594-15157707,15157916-15158206,15158290-15158400,15158484-15158537,15158619-15158698,15158825-15158940,15159032-15159146,15159236-15159362	AT4G31180.2  CDS  gene_syn F6E21.100, F6E21_100  go_component cytoplasm|GO:0005737||IEA  go_component chloroplast|GO:0009507||IEA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function aspartate-tRNA ligase activity|GO:0004815||IEA  go_function ATP binding|GO:0005524||IEA  go_component cytoplasm|GO:0005737||ISS  go_process aspartyl-tRNA aminoacylation|GO:0006422||ISS  go_function aspartate-tRNA ligase activity|GO:0004815||ISS  go_function ATP binding|GO:0005524||ISS  product aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative  note aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative; FUNCTIONS IN: aminoacyl-tRNA ligase activity, aspartate-tRNA ligase activity, nucleotide binding, ATP binding, nucleic acid binding; INVOLVED IN: response to cadmium ion, aspartyl-tRNA aminoacylation; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aspartyl-tRNA synthetase, class IIb, archea/euk type (InterPro:IPR004523), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Aminoacyl-tRNA synthetase, class II, conserved region (InterPro:IPR006195), Aspartyl-tRNA synthetase, class IIb (InterPro:IPR002312), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D, K and N) (InterPro:IPR004364), Aminoacyl-tRNA synthetase, class II (D, K and N)-like (InterPro:IPR018150); BEST Arabidopsis thaliana protein match is: aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative (TAIR:AT4G26870.1); Has 17233 Blast hits to 14062 proteins in 1714 species: Archae - 297; Bacteria - 9930; Metazoa - 655; Fungi - 618; Plants - 225; Viruses - 0; Other Eukaryotes - 5508 (source: NCBI BLink).  protein_id AT4G31180.2p  transcript_id AT4G31180.2  protein_id AT4G31180.2p  transcript_id AT4G31180.2  
At4g31190	chr4:015159798	0.0	C/15159798-15160175	AT4G31190.1  pseudogenic_transcript  pseudo  note hypothetical protein  
At4g31196	chr4:015161173	0.0	W/15161173-15161277,15161371-15161415	AT4G31196.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process biological_process|GO:0008150||ND  product electron carrier/ oxidoreductase  note electron carrier/ oxidoreductase; FUNCTIONS IN: electron carrier activity, oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding (InterPro:IPR008274); BEST Arabidopsis thaliana protein match is: xanthine dehydrogenase family protein (TAIR:AT3G04390.1); Has 29 Blast hits to 29 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 24; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G31196.1p  transcript_id AT4G31196.1  protein_id AT4G31196.1p  transcript_id AT4G31196.1  
At4g31200	chr4:015163559	0.0	C/15163559-15164568,15163108-15163379,15162323-15162993	AT4G31200.1  CDS  gene_syn F8F16.10, F8F16_10  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process RNA processing|GO:0006396||ISS  go_function RNA binding|GO:0003723||ISS  product SWAP (Suppressor-of-White-APricot)/surp domain-containing protein  note SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061), Regulation of nuclear pre-mRNA protein (InterPro:IPR006569); Has 14318 Blast hits to 9470 proteins in 529 species: Archae - 6; Bacteria - 561; Metazoa - 6216; Fungi - 2574; Plants - 2742; Viruses - 216; Other Eukaryotes - 2003 (source: NCBI BLink).  protein_id AT4G31200.1p  transcript_id AT4G31200.1  protein_id AT4G31200.1p  transcript_id AT4G31200.1  
At4g31200	chr4:015163559	0.0	C/15163559-15164568,15163108-15163379,15162323-15162993	AT4G31200.2  CDS  gene_syn F8F16.10, F8F16_10  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process RNA processing|GO:0006396||ISS  go_function RNA binding|GO:0003723||ISS  product SWAP (Suppressor-of-White-APricot)/surp domain-containing protein  note SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061), Regulation of nuclear pre-mRNA protein (InterPro:IPR006569); Has 14318 Blast hits to 9470 proteins in 529 species: Archae - 6; Bacteria - 561; Metazoa - 6216; Fungi - 2574; Plants - 2742; Viruses - 216; Other Eukaryotes - 2003 (source: NCBI BLink).  protein_id AT4G31200.2p  transcript_id AT4G31200.2  protein_id AT4G31200.2p  transcript_id AT4G31200.2  
At4g31200	chr4:015163559	0.0	C/15163559-15164568,15163108-15163379,15162323-15162993	AT4G31200.3  CDS  gene_syn F8F16.10, F8F16_10  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process RNA processing|GO:0006396||ISS  go_function RNA binding|GO:0003723||ISS  product SWAP (Suppressor-of-White-APricot)/surp domain-containing protein  note SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061), Regulation of nuclear pre-mRNA protein (InterPro:IPR006569); Has 14318 Blast hits to 9470 proteins in 529 species: Archae - 6; Bacteria - 561; Metazoa - 6216; Fungi - 2574; Plants - 2742; Viruses - 216; Other Eukaryotes - 2003 (source: NCBI BLink).  protein_id AT4G31200.3p  transcript_id AT4G31200.3  protein_id AT4G31200.3p  transcript_id AT4G31200.3  
At4g31210	chr4:015165280	0.0	W/15165280-15165360,15165593-15166234,15166295-15166795,15166884-15167284,15167492-15168131,15168208-15168294,15168458-15168504,15168595-15168704,15168813-15168913,15169094-15169186,15169464-15169550,15169682-15169765,15170272-15170340,15170497-15170556,15170650-15170721,15170850-15170957,15171045-15171121,15171322-15171405,15171564-15171675,15171750-15171839,15171975-15172034,15172131-15172226,15172394-15172534	AT4G31210.1  CDS  gene_syn F8F16.30, F8F16_30  go_component chromosome|GO:0005694||IEA  go_process DNA metabolic process|GO:0006259||IEA  go_process DNA topological change|GO:0006265||IEA  go_process DNA unwinding during replication|GO:0006268||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA topoisomerase activity|GO:0003916||IEA  go_function DNA topoisomerase type I activity|GO:0003917||IEA  go_process DNA topological change|GO:0006265||ISS  go_process DNA unwinding during replication|GO:0006268||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA topoisomerase type I activity|GO:0003917||ISS  product DNA topoisomerase family protein  note DNA topoisomerase family protein; FUNCTIONS IN: DNA topoisomerase activity, DNA topoisomerase type I activity, DNA binding, nucleic acid binding; INVOLVED IN: DNA topological change, DNA unwinding during replication, DNA metabolic process; LOCATED IN: chromosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase, type IA, zn finger (InterPro:IPR013498), DNA topoisomerase, type IA, core (InterPro:IPR000380), DNA topoisomerase, type IA, DNA-binding (InterPro:IPR003602), DNA topoisomerase, type IA, domain 2 (InterPro:IPR003601), DNA topoisomerase, type IA, central (InterPro:IPR013497), DNA topoisomerase, type IA, central region, subdomain 3 (InterPro:IPR013826), DNA topoisomerase I, bacterial-type (InterPro:IPR005733), Toprim subdomain (InterPro:IPR006154), DNA topoisomerase, type IA, central region, subdomain 1 (InterPro:IPR013824), TOPRIM (InterPro:IPR006171); BEST Arabidopsis thaliana protein match is: DNA topoisomerase III alpha, putative (TAIR:AT5G63920.1); Has 15959 Blast hits to 13205 proteins in 1711 species: Archae - 250; Bacteria - 5099; Metazoa - 1724; Fungi - 605; Plants - 147; Viruses - 34; Other Eukaryotes - 8100 (source: NCBI BLink).  protein_id AT4G31210.1p  transcript_id AT4G31210.1  protein_id AT4G31210.1p  transcript_id AT4G31210.1  
At4g31230	chr4:015175902	0.0	C/15175902-15176109,15175701-15175804,15175481-15175602,15175170-15175375,15175016-15175079,15174631-15174928,15174441-15174542,15173933-15174358,15173071-15173835	AT4G31230.1  CDS  gene_syn F8F16.50, F8F16_50  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process response to stress|GO:0006950||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function protein kinase activity|GO:0004672||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), UspA (InterPro:IPR006016), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT2G24370.1); Has 81522 Blast hits to 79761 proteins in 3174 species: Archae - 59; Bacteria - 8405; Metazoa - 34984; Fungi - 5825; Plants - 18039; Viruses - 216; Other Eukaryotes - 13994 (source: NCBI BLink).  protein_id AT4G31230.1p  transcript_id AT4G31230.1  protein_id AT4G31230.1p  transcript_id AT4G31230.1  
At4g31240	chr4:015177882	0.0	C/15177882-15177986,15177313-15177792,15176637-15177230	AT4G31240.1  CDS  gene_syn F8F16.60, F8F16_60  go_process cell redox homeostasis|GO:0045454||IEA  go_component cellular_component|GO:0005575||ND  product unknown protein  note INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT1G60420.1); Has 1190 Blast hits to 724 proteins in 157 species: Archae - 0; Bacteria - 225; Metazoa - 381; Fungi - 0; Plants - 174; Viruses - 0; Other Eukaryotes - 410 (source: NCBI BLink).  protein_id AT4G31240.1p  transcript_id AT4G31240.1  protein_id AT4G31240.1p  transcript_id AT4G31240.1  
At4g31240	chr4:015177882	0.0	C/15177882-15177986,15177313-15177792,15176637-15177230	AT4G31240.2  CDS  gene_syn F8F16.60, F8F16_60  go_process cell redox homeostasis|GO:0045454||IEA  go_component cellular_component|GO:0005575||ND  product unknown protein  note INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT1G60420.1); Has 1190 Blast hits to 724 proteins in 157 species: Archae - 0; Bacteria - 225; Metazoa - 381; Fungi - 0; Plants - 174; Viruses - 0; Other Eukaryotes - 410 (source: NCBI BLink).  protein_id AT4G31240.2p  transcript_id AT4G31240.2  protein_id AT4G31240.2p  transcript_id AT4G31240.2  
At4g31248	chr4:015179132	0.0	W/15179132-15180803	AT4G31248.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT4G31250  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G31248.1  
At4g31250	chr4:015181082	0.0	C/15181082-15181751,15179962-15180648,15179201-15179874	AT4G31250.1  CDS  gene_syn F8F16.70, F8F16_70  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, leaf whorl, embryo, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT3G20190.1); Has 71100 Blast hits to 53066 proteins in 1585 species: Archae - 43; Bacteria - 4054; Metazoa - 20889; Fungi - 3171; Plants - 34333; Viruses - 236; Other Eukaryotes - 8374 (source: NCBI BLink).  protein_id AT4G31250.1p  transcript_id AT4G31250.1  protein_id AT4G31250.1p  transcript_id AT4G31250.1  
At4g31260	chr4:015182593	0.0	C/15182593-15182784	AT4G31260.1  CDS  gene_syn F8F16.80, F8F16_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G31260.1p  transcript_id AT4G31260.1  protein_id AT4G31260.1p  transcript_id AT4G31260.1  
At4g31265	chr4:015183084	0.0	W/15183084-15183156	AT4G31265.1  tRNA  gene_syn 67184.TRNA-ARG-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: ACG)  transcript_id AT4G31265.1  
At4g31270	chr4:015184050	0.0	C/15184050-15184503,15183291-15183721	AT4G31270.1  CDS  gene_syn F8F16.90, F8F16_90  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: gt-2-related (TAIR:AT2G33550.1); Has 142 Blast hits to 141 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 1; Plants - 121; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT4G31270.1p  transcript_id AT4G31270.1  protein_id AT4G31270.1p  transcript_id AT4G31270.1  
At4g31280	chr4:015185929	0.0	C/15185929-15186005,15185801-15185885	AT4G31280.1  CDS  gene_syn F8F16.100, F8F16_100  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G31280.1p  transcript_id AT4G31280.1  protein_id AT4G31280.1p  transcript_id AT4G31280.1  
At4g31290	chr4:015186851	0.0	W/15186851-15186959,15187077-15187153,15187265-15187321,15187402-15187458,15187548-15187588,15187705-15187776,15187873-15187952,15188088-15188278	AT4G31290.1  CDS  gene_syn F8F16.110, F8F16_110  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ChaC-like family protein  note ChaC-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ChaC-like protein (InterPro:IPR006840); BEST Arabidopsis thaliana protein match is: ChaC-like family protein (TAIR:AT5G26220.1); Has 1092 Blast hits to 1086 proteins in 379 species: Archae - 0; Bacteria - 540; Metazoa - 194; Fungi - 85; Plants - 75; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink).  protein_id AT4G31290.1p  transcript_id AT4G31290.1  protein_id AT4G31290.1p  transcript_id AT4G31290.1  
At4g31300	chr4:015188927	0.0	W/15188927-15189029,15189205-15189281,15189474-15189529,15189624-15189696,15190195-15190309,15190451-15190524,15190631-15190705,15190804-15190935	AT4G31300.2  CDS  gene_syn 20S PROTEASOME SUBUNIT PBA1, F8F16.120, F8F16_120, PBA1  gene PBA1  function Encodes 20S proteasome subunit PBA1 (PBA1).  go_component plasma membrane|GO:0005886|17151019|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function endopeptidase activity|GO:0004175||IEA  go_function threonine-type endopeptidase activity|GO:0004298||IEA  go_component proteasome core complex|GO:0005839|9373170|TAS  go_component proteasome core complex|GO:0005839|9611183|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_function peptidase activity|GO:0008233||ISS  product PBA1; endopeptidase/ peptidase/ threonine-type endopeptidase  note PBA1; FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: response to salt stress, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Peptidase T1A, proteasome beta-subunit (InterPro:IPR000243), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: PBE1; endopeptidase/ peptidase/ threonine-type endopeptidase (TAIR:AT1G13060.1); Has 4939 Blast hits to 4939 proteins in 414 species: Archae - 490; Bacteria - 178; Metazoa - 1913; Fungi - 1079; Plants - 461; Viruses - 0; Other Eukaryotes - 818 (source: NCBI BLink).  protein_id AT4G31300.2p  transcript_id AT4G31300.2  protein_id AT4G31300.2p  transcript_id AT4G31300.2  
At4g31300	chr4:015188927	0.0	W/15188927-15189029,15189205-15189281,15189474-15189529,15189624-15189696,15190198-15190309,15190451-15190524,15190631-15190705,15190804-15190935	AT4G31300.1  CDS  gene_syn 20S PROTEASOME SUBUNIT PBA1, F8F16.120, F8F16_120, PBA1  gene PBA1  function Encodes 20S proteasome subunit PBA1 (PBA1).  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function endopeptidase activity|GO:0004175||IEA  go_function threonine-type endopeptidase activity|GO:0004298||IEA  go_component proteasome core complex|GO:0005839|9373170|TAS  go_component proteasome core complex|GO:0005839|9611183|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_function peptidase activity|GO:0008233||ISS  product PBA1; endopeptidase/ peptidase/ threonine-type endopeptidase  note PBA1; FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: response to salt stress, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Peptidase T1A, proteasome beta-subunit (InterPro:IPR000243), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: PBB2; endopeptidase/ peptidase/ threonine-type endopeptidase (TAIR:AT5G40580.2); Has 4836 Blast hits to 4836 proteins in 412 species: Archae - 496; Bacteria - 178; Metazoa - 1852; Fungi - 1074; Plants - 437; Viruses - 0; Other Eukaryotes - 799 (source: NCBI BLink).  protein_id AT4G31300.1p  transcript_id AT4G31300.1  protein_id AT4G31300.1p  transcript_id AT4G31300.1  
At4g31310	chr4:015191325	0.0	W/15191325-15191443,15191533-15191605,15191825-15191917,15192020-15192103,15192188-15192337	AT4G31310.1  CDS  gene_syn F8F16.130, F8F16_130  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related  note avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Butirosin biosynthesis, BtrG-like (InterPro:IPR013024), AIG2-like (InterPro:IPR009288); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24390.1); Has 237 Blast hits to 237 proteins in 65 species: Archae - 15; Bacteria - 38; Metazoa - 0; Fungi - 57; Plants - 61; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT4G31310.1p  transcript_id AT4G31310.1  protein_id AT4G31310.1p  transcript_id AT4G31310.1  
At4g31320	chr4:015193993	0.0	C/15193993-15194562	AT4G31320.1  CDS  gene_syn F8F16.140, F8F16_140  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  product auxin-responsive protein, putative / small auxin up RNA (SAUR_C)  note auxin-responsive protein, putative / small auxin up RNA (SAUR_C); FUNCTIONS IN: calmodulin binding; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative / small auxin up RNA (SAUR_D) (TAIR:AT2G24400.1); Has 680 Blast hits to 674 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 679; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G31320.1p  transcript_id AT4G31320.1  protein_id AT4G31320.1p  transcript_id AT4G31320.1  
At4g31330	chr4:015202354	0.0	W/15202354-15202521,15202600-15203151	AT4G31330.1  CDS  gene_syn F8F16.150, F8F16_150  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF599 (InterPro:IPR006747); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10580.1); Has 252 Blast hits to 252 proteins in 85 species: Archae - 0; Bacteria - 139; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT4G31330.1p  transcript_id AT4G31330.1  protein_id AT4G31330.1p  transcript_id AT4G31330.1  
At4g31340	chr4:015205662	0.0	W/15205662-15205821,15206205-15206332,15206453-15206524,15206618-15206731,15207196-15207264,15207332-15207388,15207526-15207579,15207665-15207727,15207824-15207886,15208021-15208176,15208279-15208434,15208553-15208633,15208728-15208789,15208872-15208950	AT4G31340.1  CDS  gene_syn F8F16.160, F8F16_160  go_component plasma membrane|GO:0005886|17151019|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  product myosin heavy chain-related  note myosin heavy chain-related; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: DNA repair ATPase-related (TAIR:AT2G24420.2); Has 34880 Blast hits to 19753 proteins in 1289 species: Archae - 456; Bacteria - 3905; Metazoa - 16892; Fungi - 2497; Plants - 1119; Viruses - 175; Other Eukaryotes - 9836 (source: NCBI BLink).  protein_id AT4G31340.1p  transcript_id AT4G31340.1  protein_id AT4G31340.1p  transcript_id AT4G31340.1  
At4g31340	chr4:015205662	0.0	W/15205662-15205821,15206205-15206332,15206453-15206524,15206618-15206731,15207196-15207264,15207332-15207388,15207526-15207579,15207665-15207727,15207824-15207886,15208021-15208176,15208279-15208434,15208553-15208633,15208728-15208793,15208872-15208895	AT4G31340.2  CDS  gene_syn F8F16.160, F8F16_160  go_component plasma membrane|GO:0005886|17151019|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  product myosin heavy chain-related  note myosin heavy chain-related; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: DNA repair ATPase-related (TAIR:AT2G24420.2); Has 34709 Blast hits to 19708 proteins in 1289 species: Archae - 456; Bacteria - 3903; Metazoa - 16748; Fungi - 2489; Plants - 1114; Viruses - 175; Other Eukaryotes - 9824 (source: NCBI BLink).  protein_id AT4G31340.2p  transcript_id AT4G31340.2  protein_id AT4G31340.2p  transcript_id AT4G31340.2  
At4g31350	chr4:015213133	0.0	W/15213133-15213465,15213580-15213678,15213776-15213876,15213976-15214047,15214166-15214256,15214538-15214618,15215025-15215084,15215195-15215317,15215403-15215441,15215520-15215651	AT4G31350.1  CDS  gene_syn F8F16.170, F8F16_170  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF266, plant (InterPro:IPR004949); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19160.1); Has 319 Blast hits to 319 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 303; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT4G31350.1p  transcript_id AT4G31350.1  protein_id AT4G31350.1p  transcript_id AT4G31350.1  
At4g31350	chr4:015213133	0.0	W/15213133-15213465,15213580-15213678,15213776-15213876,15213976-15214047,15214166-15214256,15214538-15214618,15215025-15215084,15215195-15215317,15215403-15215441,15215520-15215651	AT4G31350.2  CDS  gene_syn F8F16.170, F8F16_170  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF266, plant (InterPro:IPR004949); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19160.1).  protein_id AT4G31350.2p  transcript_id AT4G31350.2  protein_id AT4G31350.2p  transcript_id AT4G31350.2  
At4g31351	chr4:015217687	0.0	W/15217687-15217884	AT4G31351.1  CDS  product unknown protein  note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31354.1); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G31351.1p  transcript_id AT4G31351.1  protein_id AT4G31351.1p  transcript_id AT4G31351.1  
At4g31354	chr4:015219148	0.0	W/15219148-15219345	AT4G31354.1  CDS  product unknown protein  note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31351.1); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G31354.1p  transcript_id AT4G31354.1  protein_id AT4G31354.1p  transcript_id AT4G31354.1  
At4g31355	chr4:015219697	0.0	C/15219697-15219822	AT4G31355.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G31355.1p  transcript_id AT4G31355.1  protein_id AT4G31355.1p  transcript_id AT4G31355.1  
At4g31360	chr4:015221945	0.0	W/15221945-15222267,15222677-15222773,15222911-15222970,15223230-15223310	AT4G31360.1  CDS  gene_syn F8F16.180, F8F16_180  go_process cell redox homeostasis|GO:0045454||IEA  go_function selenium binding|GO:0008430||IEA  product selenium binding  note selenium binding; FUNCTIONS IN: selenium binding; INVOLVED IN: cell redox homeostasis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SelT/selW/selH selenoprotein (InterPro:IPR011893); BEST Arabidopsis thaliana protein match is: selenium binding (TAIR:AT2G24440.1); Has 199 Blast hits to 172 proteins in 52 species: Archae - 0; Bacteria - 2; Metazoa - 101; Fungi - 17; Plants - 36; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT4G31360.1p  transcript_id AT4G31360.1  protein_id AT4G31360.1p  transcript_id AT4G31360.1  
At4g31370	chr4:015223838	0.0	C/15223838-15224674	AT4G31370.1  CDS  gene_syn F3L17.11, FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 5 PRECURSOR, FLA5  gene FLA5  function fasciclin-like arabinogalactan-protein, putative (FLA5)  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function molecular_function|GO:0003674||ND  product FLA5 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 5 PRECURSOR)  note FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 5 PRECURSOR (FLA5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: anchored to membrane; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FLA3 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 3 PRECURSOR) (TAIR:AT2G24450.1); Has 2213 Blast hits to 1719 proteins in 282 species: Archae - 0; Bacteria - 528; Metazoa - 316; Fungi - 254; Plants - 732; Viruses - 149; Other Eukaryotes - 234 (source: NCBI BLink).  protein_id AT4G31370.1p  transcript_id AT4G31370.1  protein_id AT4G31370.1p  transcript_id AT4G31370.1  
At4g31380	chr4:015229837	0.0	W/15229837-15230382	AT4G31380.1  CDS  gene_syn F3L17.1, FLP1, FPF1-LIKE PROTEIN 1  gene FLP1  function encodes a small protein with unknown function and is similar to flower promoting factor 1. This gene is not expressed in apical meristem after floral induction but is expressed in roots, flowers, and in low abundance, leaves.  go_component endomembrane system|GO:0012505||IEA  go_function molecular_function|GO:0003674||ND  product FLP1 (FPF1-LIKE PROTEIN 1)  note FPF1-LIKE PROTEIN 1 (FLP1); FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: FPF1 (FLOWERING PROMOTING FACTOR 1) (TAIR:AT5G24860.1); Has 61 Blast hits to 61 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G31380.1p  transcript_id AT4G31380.1  protein_id AT4G31380.1p  transcript_id AT4G31380.1  
At4g31390	chr4:015233126	0.0	W/15233126-15233476,15233663-15233869,15233956-15234045,15234148-15234294,15234402-15234566,15234651-15234791,15234899-15235078,15235206-15235401,15235495-15235622,15235761-15235832,15235929-15236041,15236143-15236266,15236362-15236431,15236700-15236764	AT4G31390.1  CDS  gene_syn F3L17.6  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_component plastoglobule|GO:0010287|16461379|IDA  product ABC1 family protein  note ABC1 family protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase, core (InterPro:IPR000719), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ABC1 family protein (TAIR:AT1G79600.1); Has 7612 Blast hits to 7598 proteins in 1109 species: Archae - 67; Bacteria - 2658; Metazoa - 349; Fungi - 317; Plants - 353; Viruses - 14; Other Eukaryotes - 3854 (source: NCBI BLink).  protein_id AT4G31390.1p  transcript_id AT4G31390.1  protein_id AT4G31390.1p  transcript_id AT4G31390.1  
At4g31390	chr4:015233126	0.0	W/15233126-15233476,15233663-15233869,15233956-15234045,15234148-15234294,15234402-15234566,15234726-15234791,15234899-15235078,15235206-15235401,15235495-15235622,15235761-15235832,15235929-15236041,15236143-15236266,15236362-15236431,15236700-15236764	AT4G31390.2  CDS  gene_syn F3L17.6  go_component chloroplast|GO:0009507|18431481|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_component plastoglobule|GO:0010287|16461379|IDA  product ABC1 family protein  note ABC1 family protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase, core (InterPro:IPR000719), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ABC1 family protein (TAIR:AT1G79600.1); Has 7510 Blast hits to 7501 proteins in 1112 species: Archae - 67; Bacteria - 2686; Metazoa - 331; Fungi - 304; Plants - 344; Viruses - 14; Other Eukaryotes - 3764 (source: NCBI BLink).  protein_id AT4G31390.2p  transcript_id AT4G31390.2  protein_id AT4G31390.2p  transcript_id AT4G31390.2  
At4g31400	chr4:015237411	0.0	W/15237411-15237565,15237768-15238002,15238101-15238196,15238278-15238346,15238685-15239013,15239113-15239266	AT4G31400.1  CDS  gene_syn F3L17.7  go_process DNA repair|GO:0006281||IEA  go_function damaged DNA binding|GO:0003684||IEA  go_function DNA-directed DNA polymerase activity|GO:0003887||IEA  product DNA-directed DNA polymerase/ damaged DNA binding  note DNA-directed DNA polymerase/ damaged DNA binding; FUNCTIONS IN: damaged DNA binding, DNA-directed DNA polymerase activity; INVOLVED IN: DNA repair; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: DNA-repair protein, UmuC-like (InterPro:IPR001126); Has 248 Blast hits to 248 proteins in 104 species: Archae - 0; Bacteria - 2; Metazoa - 132; Fungi - 75; Plants - 22; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT4G31400.1p  transcript_id AT4G31400.1  protein_id AT4G31400.1p  transcript_id AT4G31400.1  
At4g31398	chr4:015238584	0.0	C/15238584-15239282	AT4G31398.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT4G31400  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G31398.1  
At4g31408	chr4:015242729	0.0	C/15242729-15242969	AT4G31408.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G31408.1  
At4g31410	chr4:015244259	0.0	W/15244259-15245148,15245438-15245474	AT4G31410.1  CDS  gene_syn F3L17.5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24740.2); Has 146 Blast hits to 137 proteins in 9 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G31410.1p  transcript_id AT4G31410.1  protein_id AT4G31410.1p  transcript_id AT4G31410.1  
At4g31410	chr4:015244259	0.0	W/15244259-15245148,15245438-15245474	AT4G31410.2  CDS  gene_syn F3L17.5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24740.2); Has 146 Blast hits to 137 proteins in 9 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G31410.2p  transcript_id AT4G31410.2  protein_id AT4G31410.2p  transcript_id AT4G31410.2  
At4g31420	chr4:015247659	0.0	C/15247659-15247763,15246822-15247388,15246561-15246730,15246240-15246455,15245987-15246143	AT4G31420.1  CDS  gene_syn F3L17.9  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: FZF; transcription factor (TAIR:AT2G24500.1); Has 505 Blast hits to 488 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 207; Fungi - 160; Plants - 53; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT4G31420.1p  transcript_id AT4G31420.1  protein_id AT4G31420.1p  transcript_id AT4G31420.1  
At4g31420	chr4:015247659	0.0	C/15247659-15247763,15246822-15247388,15246561-15246730,15246240-15246458,15245987-15246143	AT4G31420.2  CDS  gene_syn F3L17.9  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: FZF; transcription factor (TAIR:AT2G24500.1); Has 503 Blast hits to 486 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 207; Fungi - 160; Plants - 53; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT4G31420.2p  transcript_id AT4G31420.2  protein_id AT4G31420.2p  transcript_id AT4G31420.2  
At4g31430	chr4:015248510	0.0	W/15248510-15248780,15249115-15249167,15249317-15249405,15249569-15249675,15249755-15249846,15250281-15250451,15250709-15250898,15250993-15251057,15251161-15251215,15251306-15251384,15251495-15251574,15251655-15251793,15251871-15252204	AT4G31430.2  CDS  gene_syn F3L17.8  go_component plasma membrane|GO:0005886|16618929|IDA  product unknown protein  note unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 1991 Blast hits to 609 proteins in 150 species: Archae - 0; Bacteria - 281; Metazoa - 325; Fungi - 191; Plants - 52; Viruses - 14; Other Eukaryotes - 1128 (source: NCBI BLink).  protein_id AT4G31430.2p  transcript_id AT4G31430.2  protein_id AT4G31430.2p  transcript_id AT4G31430.2  
At4g31430	chr4:015248510	0.0	W/15248510-15248780,15249115-15249167,15249317-15249405,15249569-15249675,15249755-15249846,15250281-15250451,15250709-15250898,15250993-15251057,15251161-15251215,15251306-15251384,15251495-15251574,15251655-15251793,15251879-15251945	AT4G31430.1  CDS  gene_syn F3L17.8  go_component plasma membrane|GO:0005886|16618929|IDA  product unknown protein  note unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 163 Blast hits to 110 proteins in 44 species: Archae - 0; Bacteria - 16; Metazoa - 32; Fungi - 28; Plants - 32; Viruses - 2; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT4G31430.1p  transcript_id AT4G31430.1  protein_id AT4G31430.1p  transcript_id AT4G31430.1  
At4g31430	chr4:015248510	0.0	W/15248510-15248780,15249115-15249167,15249317-15249405,15249569-15249675,15249755-15249846,15250281-15250451,15250709-15250898,15250993-15251057,15251161-15251215,15251306-15251384,15251495-15251574,15251655-15251793,15251879-15251945	AT4G31430.3  CDS  gene_syn F3L17.8  go_component plasma membrane|GO:0005886|16618929|IDA  product unknown protein  note unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 163 Blast hits to 110 proteins in 44 species: Archae - 0; Bacteria - 16; Metazoa - 32; Fungi - 28; Plants - 32; Viruses - 2; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT4G31430.3p  transcript_id AT4G31430.3  protein_id AT4G31430.3p  transcript_id AT4G31430.3  
At4g31440	chr4:015253731	0.0	W/15253731-15254870	AT4G31440.1  CDS  gene_syn F3L17.10, F3L17_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24530.1); Has 85 Blast hits to 83 proteins in 17 species: Archae - 0; Bacteria - 11; Metazoa - 2; Fungi - 4; Plants - 66; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G31440.1p  transcript_id AT4G31440.1  protein_id AT4G31440.1p  transcript_id AT4G31440.1  
At4g31441	chr4:015254877	0.0	W/15254877-15254999	AT4G31441.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G31441.1p  transcript_id AT4G31441.1  protein_id AT4G31441.1p  transcript_id AT4G31441.1  
At4g31450	chr4:015256943	0.0	C/15256943-15257977,15256764-15256814,15256578-15256676,15256322-15256492,15255955-15256092	AT4G31450.1  CDS  gene_syn F3L17.20, F3L17_20  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G24870.2); Has 5333 Blast hits to 5244 proteins in 197 species: Archae - 0; Bacteria - 4; Metazoa - 1900; Fungi - 309; Plants - 2274; Viruses - 6; Other Eukaryotes - 840 (source: NCBI BLink).  protein_id AT4G31450.1p  transcript_id AT4G31450.1  protein_id AT4G31450.1p  transcript_id AT4G31450.1  
At4g31460	chr4:015260651	0.0	C/15260651-15260847,15259773-15260214	AT4G31460.1  CDS  gene_syn F3L17.30, F3L17_30  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L28 family protein  note ribosomal protein L28 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L28 (InterPro:IPR001383); Has 797 Blast hits to 797 proteins in 221 species: Archae - 0; Bacteria - 262; Metazoa - 81; Fungi - 82; Plants - 19; Viruses - 0; Other Eukaryotes - 353 (source: NCBI BLink).  protein_id AT4G31460.1p  transcript_id AT4G31460.1  protein_id AT4G31460.1p  transcript_id AT4G31460.1  
At4g31470	chr4:015261746	0.0	C/15261746-15262303	AT4G31470.1  CDS  gene_syn F3L17.40, F3L17_40  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_component extracellular region|GO:0005576||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pathogenesis-related protein, putative  note pathogenesis-related protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related, conserved site (InterPro:IPR018244), Allergen V5/Tpx-1 related (InterPro:IPR001283), Ves allergen (InterPro:IPR002413), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: allergen V5/Tpx-1-related family protein (TAIR:AT5G57625.1); Has 2268 Blast hits to 2190 proteins in 290 species: Archae - 0; Bacteria - 47; Metazoa - 1344; Fungi - 220; Plants - 599; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT4G31470.1p  transcript_id AT4G31470.1  protein_id AT4G31470.1p  transcript_id AT4G31470.1  
At4g31480	chr4:015264076	0.0	W/15264076-15266190,15266418-15266927,15267020-15267105,15267180-15267384	AT4G31480.1  CDS  gene_syn F3L17.50, F3L17_50  go_component endomembrane system|GO:0012505||IEA  go_component membrane coat|GO:0030117||IEA  go_component COPI vesicle coat|GO:0030126||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function structural molecule activity|GO:0005198||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function clathrin binding|GO:0030276||ISS  product coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative  note coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative; FUNCTIONS IN: protein binding, clathrin binding, structural molecule activity, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, endomembrane system, COPI vesicle coat; EXPRESSED IN: male gametophyte, guard cell; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Coatomer, beta subunit, C-terminal (InterPro:IPR011710), Armadillo-like helical (InterPro:IPR011989), Coatomer, beta subunit (InterPro:IPR016460), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative (TAIR:AT4G31490.1); Has 2128 Blast hits to 2064 proteins in 250 species: Archae - 0; Bacteria - 0; Metazoa - 1038; Fungi - 407; Plants - 225; Viruses - 0; Other Eukaryotes - 458 (source: NCBI BLink).  protein_id AT4G31480.1p  transcript_id AT4G31480.1  protein_id AT4G31480.1p  transcript_id AT4G31480.1  
At4g31490	chr4:015269460	0.0	W/15269460-15271505,15271724-15272233,15272329-15272414,15272489-15272693	AT4G31490.1  CDS  gene_syn F3L17.60, F3L17_60  go_component membrane|GO:0016020|17432890|IDA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function structural molecule activity|GO:0005198||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function clathrin binding|GO:0030276||ISS  product coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative  note coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative; FUNCTIONS IN: protein binding, clathrin binding, structural molecule activity, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane; EXPRESSED IN: guard cell, leaf; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Coatomer, beta subunit, C-terminal (InterPro:IPR011710), Armadillo-like helical (InterPro:IPR011989), Coatomer, beta subunit (InterPro:IPR016460), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative (TAIR:AT4G31480.1); Has 2132 Blast hits to 2068 proteins in 250 species: Archae - 0; Bacteria - 0; Metazoa - 1042; Fungi - 407; Plants - 225; Viruses - 0; Other Eukaryotes - 458 (source: NCBI BLink).  protein_id AT4G31490.1p  transcript_id AT4G31490.1  protein_id AT4G31490.1p  transcript_id AT4G31490.1  
At4g31500	chr4:015274390	0.0	C/15274390-15275271,15273677-15274294	AT4G31500.1  CDS  gene_syn ALTERED TRYPTOPHAN REGULATION 4, ATR4, CYP83B1, CYTOCHROME P450 MONOOXYGENASE 83B1, F3L17.70, F3L17_70, RED ELONGATED 1, RED1, RNT1, RUNT 1, SUPERROOT 2, SUR2  gene CYP83B1  function Encodes an oxime-metabolizing enzyme in the biosynthetic pathway of glucosinolates. Is required for phytochrome signal transduction in red light. Mutation confers auxin overproduction.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process tryptophan biosynthetic process|GO:0000162|11805067|IMP  go_process shade avoidance|GO:0009641|9165750|IMP  go_process indoleacetic acid biosynthetic process|GO:0009684|11114200|IMP  go_process indole glucosinolate biosynthetic process|GO:0009759|11553739|IDA  go_process response to red light|GO:0010114|9165750|IMP  go_process defense response to bacterium|GO:0042742|19095898|IMP  go_process adventitious root development|GO:0048830|16377752|TAS  go_process callose deposition in cell wall during defense response|GO:0052544|19095898|IMP  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen|GO:0016709|12970475|IDA  go_function oxygen binding|GO:0019825||ISS  product CYP83B1 (CYTOCHROME P450 MONOOXYGENASE 83B1); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen / oxygen binding  note CYTOCHROME P450 MONOOXYGENASE 83B1 (CYP83B1); FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, oxygen binding; INVOLVED IN: in 8 processes; LOCATED IN: mitochondrion, endoplasmic reticulum, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP83A1 (CYTOCHROME P450 83A1); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen / oxygen binding (TAIR:AT4G13770.1); Has 22914 Blast hits to 22753 proteins in 1201 species: Archae - 21; Bacteria - 1719; Metazoa - 10234; Fungi - 4446; Plants - 5750; Viruses - 6; Other Eukaryotes - 738 (source: NCBI BLink).  protein_id AT4G31500.1p  transcript_id AT4G31500.1  protein_id AT4G31500.1p  transcript_id AT4G31500.1  
At4g31510	chr4:015276972	0.0	C/15276972-15277219,15276328-15276724	AT4G31510.1  CDS  gene_syn F3L17.80, F3L17_80  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24550.1); Has 125 Blast hits to 125 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 3; Plants - 109; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT4G31510.1p  transcript_id AT4G31510.1  protein_id AT4G31510.1p  transcript_id AT4G31510.1  
At4g31520	chr4:015281587	0.0	C/15281587-15281739,15281320-15281487,15281097-15281230,15280914-15281015,15280612-15280732,15280402-15280527,15280227-15280322,15280092-15280151,15279938-15280012,15279786-15279839,15279537-15279653,15278920-15279453,15278729-15278827,15278536-15278643,15278281-15278430	AT4G31520.1  CDS  gene_syn F3L17.90, F3L17_90  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product SDA1 family protein  note SDA1 family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Region of unknown function, nucleolar NUC130/133, N-terminal (InterPro:IPR012977), Armadillo-type fold (InterPro:IPR016024), SDA1 (InterPro:IPR007949); BEST Arabidopsis thaliana protein match is: SDA1 family protein (TAIR:AT1G13160.1); Has 9150 Blast hits to 5414 proteins in 361 species: Archae - 12; Bacteria - 546; Metazoa - 4065; Fungi - 1010; Plants - 358; Viruses - 198; Other Eukaryotes - 2961 (source: NCBI BLink).  protein_id AT4G31520.1p  transcript_id AT4G31520.1  protein_id AT4G31520.1p  transcript_id AT4G31520.1  
At4g31530	chr4:015282281	0.0	W/15282281-15282536,15282636-15282748,15282825-15282878,15282955-15283039,15283162-15283267,15283355-15283441,15283544-15283641,15283723-15283832,15283999-15284064	AT4G31530.1  CDS  gene_syn F3L17.100, F3L17_100  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  product binding / catalytic  note binding / catalytic; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Male sterility, NAD-binding (InterPro:IPR013120); BEST Arabidopsis thaliana protein match is: binding / catalytic/ coenzyme binding (TAIR:AT5G02240.1); Has 2281 Blast hits to 2232 proteins in 521 species: Archae - 12; Bacteria - 1390; Metazoa - 76; Fungi - 31; Plants - 258; Viruses - 0; Other Eukaryotes - 514 (source: NCBI BLink).  protein_id AT4G31530.1p  transcript_id AT4G31530.1  protein_id AT4G31530.1p  transcript_id AT4G31530.1  
At4g31540	chr4:015284739	0.0	C/15284739-15286802	AT4G31540.1  CDS  gene_syn ATEXO70G1, F3L17.110, F3L17_110, exocyst subunit EXO70 family protein G1  gene ATEXO70G1  function A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.  go_component exocyst|GO:0000145||IEA  go_process exocytosis|GO:0006887||IEA  go_component exocyst|GO:0000145||ISS  go_process vesicle docking during exocytosis|GO:0006904||ISS  go_function protein binding|GO:0005515||ISS  product ATEXO70G1 (exocyst subunit EXO70 family protein G1); protein binding  note exocyst subunit EXO70 family protein G1 (ATEXO70G1); FUNCTIONS IN: protein binding; INVOLVED IN: exocytosis, vesicle docking during exocytosis; LOCATED IN: exocyst; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: ATEXO70G2 (exocyst subunit EXO70 family protein G2); protein binding (TAIR:AT1G51640.1); Has 504 Blast hits to 500 proteins in 90 species: Archae - 0; Bacteria - 1; Metazoa - 110; Fungi - 67; Plants - 321; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G31540.1p  transcript_id AT4G31540.1  protein_id AT4G31540.1p  transcript_id AT4G31540.1  
At4g31550	chr4:015290791	0.0	C/15290791-15291458,15290333-15290458,15290065-15290245	AT4G31550.2  CDS  gene_syn AtWRKY11, F3L17.120, F3L17_120, WRKY11  gene WRKY11  function member of WRKY Transcription Factor; Group II-d; negative regulator of basal resistance to Pseudomonas syringae.  go_component nucleus|GO:0005634|10785665|IC  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_process response to chitin|GO:0010200|17722694|IEP  go_process defense response to bacterium|GO:0042742|17114354|IEP  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function calmodulin binding|GO:0005516|15733871|IDA  product WRKY11; calmodulin binding / transcription factor  note WRKY11; FUNCTIONS IN: transcription factor activity, calmodulin binding; INVOLVED IN: defense response to bacterium, response to chitin, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY, Zn-cluster (InterPro:IPR018872); BEST Arabidopsis thaliana protein match is: WRKY17; calmodulin binding / transcription factor (TAIR:AT2G24570.1); Has 1994 Blast hits to 1711 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1979; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT4G31550.2p  transcript_id AT4G31550.2  protein_id AT4G31550.2p  transcript_id AT4G31550.2  
At4g31550	chr4:015290791	0.0	C/15290791-15291458,15290333-15290461,15290065-15290245	AT4G31550.1  CDS  gene_syn AtWRKY11, F3L17.120, F3L17_120, WRKY11  gene WRKY11  function member of WRKY Transcription Factor; Group II-d; negative regulator of basal resistance to Pseudomonas syringae.  go_component nucleus|GO:0005634|10785665|IC  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_process response to chitin|GO:0010200|17722694|IEP  go_process defense response to bacterium|GO:0042742|17114354|IEP  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function calmodulin binding|GO:0005516|15733871|IDA  product WRKY11; calmodulin binding / transcription factor  note WRKY11; FUNCTIONS IN: transcription factor activity, calmodulin binding; INVOLVED IN: defense response to bacterium, response to chitin, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY, Zn-cluster (InterPro:IPR018872); BEST Arabidopsis thaliana protein match is: WRKY17; calmodulin binding / transcription factor (TAIR:AT2G24570.1); Has 1969 Blast hits to 1686 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1956; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT4G31550.1p  transcript_id AT4G31550.1  protein_id AT4G31550.1p  transcript_id AT4G31550.1  
At4g31560	chr4:015295219	0.0	W/15295219-15295503,15295900-15296028	AT4G31560.1  CDS  gene_syn HCF153  gene HCF153  function Encodes HCF153, a 15-KDa protein involved in the biogenesis of the cytochrome b(6)f complex. Associated with the thylakoid membrane.  go_component thylakoid membrane|GO:0042651|16367957|IDA  go_process cytochrome b6f complex assembly|GO:0010190|16367957|IMP  go_function molecular_function|GO:0003674||ND  product HCF153  note HCF153; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cytochrome b6f complex assembly; LOCATED IN: thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G31560.1p  transcript_id AT4G31560.1  protein_id AT4G31560.1p  transcript_id AT4G31560.1  
At4g31570	chr4:015297061	0.0	W/15297061-15297111,15297331-15297997,15298135-15303264,15303319-15303824,15303925-15304711,15304785-15305440,15305534-15305669,15305767-15305869,15305934-15306036	AT4G31570.1  CDS  gene_syn F28M20.240, F28M20_240  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: seed; EXPRESSED DURING: E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24460.1); Has 149725 Blast hits to 50120 proteins in 2064 species: Archae - 2358; Bacteria - 20690; Metazoa - 73457; Fungi - 11975; Plants - 5885; Viruses - 756; Other Eukaryotes - 34604 (source: NCBI BLink).  protein_id AT4G31570.1p  transcript_id AT4G31570.1  protein_id AT4G31570.1p  transcript_id AT4G31570.1  
At4g31580	chr4:015306983	0.0	W/15306983-15307071,15307175-15307263,15307438-15307690,15307770-15307904,15308028-15308064	AT4G31580.1  CDS  gene_syn F28M20.230, F28M20_230, RS-CONTAINING ZINC FINGER PROTEIN 22, RSZP22, SRZ-22, SRZ22  gene SRZ-22  function Encodes a Serine/arginine-rich (SR) protein RSZp22. SR proteins are splicing regulators that share a modular structure consisting of one or two N-terminal RNA recognition motif domains and a C-terminal RS-rich domain. RSZp22 is located in the nucleolus. It is a nucleocytoplasmic shuttling protein and an interacting partner to the Arabidopsis U1-70K.  go_component nucleus|GO:0005634|9761791|ISS  go_component nucleolus|GO:0005730|15686520|IDA  go_component nuclear speck|GO:0016607|15133128|IDA  go_component nuclear speck|GO:0016607|15686520|IDA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|10350090|TAS  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|9761791|TAS  go_process RNA splicing|GO:0008380|16807317|NAS  go_function protein binding|GO:0005515|9761791|IPI  product SRZ-22; protein binding  note SRZ-22; FUNCTIONS IN: protein binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nucleolus, nuclear speck, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: splicing factor, putative (TAIR:AT2G24590.1); Has 10512 Blast hits to 9050 proteins in 540 species: Archae - 4; Bacteria - 657; Metazoa - 5900; Fungi - 1082; Plants - 1842; Viruses - 108; Other Eukaryotes - 919 (source: NCBI BLink).  protein_id AT4G31580.1p  transcript_id AT4G31580.1  protein_id AT4G31580.1p  transcript_id AT4G31580.1  
At4g31580	chr4:015306983	0.0	W/15306983-15307071,15307175-15307263,15307438-15307690,15307770-15307904,15308028-15308064	AT4G31580.2  CDS  gene_syn F28M20.230, F28M20_230, RS-CONTAINING ZINC FINGER PROTEIN 22, RSZP22, SRZ-22, SRZ22  gene SRZ-22  function Encodes a Serine/arginine-rich (SR) protein RSZp22. SR proteins are splicing regulators that share a modular structure consisting of one or two N-terminal RNA recognition motif domains and a C-terminal RS-rich domain. RSZp22 is located in the nucleolus. It is a nucleocytoplasmic shuttling protein and an interacting partner to the Arabidopsis U1-70K.  go_component nucleus|GO:0005634|9761791|ISS  go_component nucleolus|GO:0005730|15686520|IDA  go_component nuclear speck|GO:0016607|15133128|IDA  go_component nuclear speck|GO:0016607|15686520|IDA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|10350090|TAS  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|9761791|TAS  go_process RNA splicing|GO:0008380|16807317|NAS  go_function protein binding|GO:0005515|9761791|IPI  product SRZ-22; protein binding  note SRZ-22; FUNCTIONS IN: protein binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nucleolus, nuclear speck, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: splicing factor, putative (TAIR:AT2G24590.1); Has 10512 Blast hits to 9050 proteins in 540 species: Archae - 4; Bacteria - 657; Metazoa - 5900; Fungi - 1082; Plants - 1842; Viruses - 108; Other Eukaryotes - 919 (source: NCBI BLink).  protein_id AT4G31580.2p  transcript_id AT4G31580.2  protein_id AT4G31580.2p  transcript_id AT4G31580.2  
At4g31590	chr4:015311617	0.0	C/15311617-15312336,15311201-15311509,15310822-15311112,15310625-15310738,15309889-15310533	AT4G31590.1  CDS  gene_syn ATCSLC05, ATCSLC5, CELLULOSE-SYNTHASE LIKE C5, CSLC05, F28M20.220, F28M20_220  gene ATCSLC5  function encodes a gene similar to cellulose synthase  go_component nucleus|GO:0005634|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  product ATCSLC5 (CELLULOSE-SYNTHASE LIKE C5); cellulose synthase/ transferase, transferring glycosyl groups  note CELLULOSE-SYNTHASE LIKE C5 (ATCSLC5); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: ATCSLC08; cellulose synthase/ transferase, transferring glycosyl groups (TAIR:AT2G24630.1); Has 3373 Blast hits to 3372 proteins in 896 species: Archae - 112; Bacteria - 2489; Metazoa - 57; Fungi - 72; Plants - 314; Viruses - 16; Other Eukaryotes - 313 (source: NCBI BLink).  protein_id AT4G31590.1p  transcript_id AT4G31590.1  protein_id AT4G31590.1p  transcript_id AT4G31590.1  
At4g31600	chr4:015316869	0.0	C/15316869-15316909,15316512-15316617,15316158-15316403,15315967-15316077,15315487-15315877,15315365-15315396	AT4G31600.2  CDS  gene_syn F28M20.210, F28M20_210  go_component membrane|GO:0016020|11152613|ISS  product UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter-related  note UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter-related; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UAA transporter (InterPro:IPR013657); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32272.1); Has 922 Blast hits to 922 proteins in 177 species: Archae - 4; Bacteria - 13; Metazoa - 243; Fungi - 263; Plants - 310; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT4G31600.2p  transcript_id AT4G31600.2  protein_id AT4G31600.2p  transcript_id AT4G31600.2  
At4g31600	chr4:015316869	0.0	C/15316869-15316909,15316512-15316617,15316158-15316403,15315967-15316077,15315719-15315877,15315487-15315630,15315232-15315396	AT4G31600.1  CDS  gene_syn F28M20.210, F28M20_210  go_component membrane|GO:0016020|11152613|ISS  product UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter-related  note UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter-related; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UAA transporter (InterPro:IPR013657); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32272.1); Has 1648 Blast hits to 1639 proteins in 227 species: Archae - 10; Bacteria - 72; Metazoa - 464; Fungi - 365; Plants - 570; Viruses - 0; Other Eukaryotes - 167 (source: NCBI BLink).  protein_id AT4G31600.1p  transcript_id AT4G31600.1  protein_id AT4G31600.1p  transcript_id AT4G31600.1  
At4g31610	chr4:015317700	0.0	W/15317700-15317765,15317853-15318207,15318292-15318401,15318493-15318861,15318951-15319205,15319291-15319639,15319727-15319776	AT4G31610.1  CDS  gene_syn ATREM1, F28M20.200, F28M20_200, REM1, REPRODUCTIVE MERISTEM 1  gene REM1  function Expressed specifically in reproductive meristems, member of a moderately sized gene family distantly related to known plant DNA binding proteins  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product REM1 (REPRODUCTIVE MERISTEM 1); DNA binding / transcription factor  note REPRODUCTIVE MERISTEM 1 (REM1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT4G31630.1); Has 4052 Blast hits to 1479 proteins in 164 species: Archae - 2; Bacteria - 513; Metazoa - 1384; Fungi - 481; Plants - 326; Viruses - 37; Other Eukaryotes - 1309 (source: NCBI BLink).  protein_id AT4G31610.1p  transcript_id AT4G31610.1  protein_id AT4G31610.1p  transcript_id AT4G31610.1  
At4g31615	chr4:015322117	0.0	C/15322117-15322194,15321589-15322008,15321131-15321499,15320792-15321049,15320408-15320708,15320297-15320334	AT4G31615.1  CDS  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product DNA binding / transcription factor  note DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, leaf whorl, embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT4G31620.1); Has 143 Blast hits to 78 proteins in 8 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G31615.1p  transcript_id AT4G31615.1  protein_id AT4G31615.1p  transcript_id AT4G31615.1  
At4g31620	chr4:015324578	0.0	C/15324578-15324658,15324077-15324502,15323584-15323979,15323258-15323506,15322882-15323170,15322759-15322796	AT4G31620.1  CDS  gene_syn F28M20.190, F28M20_190  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcriptional factor B3 family protein  note transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT4G31615.1); Has 129 Blast hits to 69 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G31620.1p  transcript_id AT4G31620.1  protein_id AT4G31620.1p  transcript_id AT4G31620.1  
At4g31630	chr4:015327143	0.0	C/15327143-15327220,15326575-15327048,15326078-15326491,15325756-15325995,15325343-15325675	AT4G31630.1  CDS  gene_syn F28M20.180, F28M20_180  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcriptional factor B3 family protein  note transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT4G31615.1); Has 366 Blast hits to 290 proteins in 59 species: Archae - 0; Bacteria - 12; Metazoa - 36; Fungi - 37; Plants - 196; Viruses - 6; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT4G31630.1p  transcript_id AT4G31630.1  protein_id AT4G31630.1p  transcript_id AT4G31630.1  
At4g31640	chr4:015328357	0.0	W/15328357-15328434,15328506-15328800,15328883-15329007,15329098-15329658	AT4G31640.1  CDS  gene_syn F28M20.170, F28M20_170  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcriptional factor B3 family protein  note transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT4G31650.1); Has 288 Blast hits to 187 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 288; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G31640.1p  transcript_id AT4G31640.1  protein_id AT4G31640.1p  transcript_id AT4G31640.1  
At4g31650	chr4:015331140	0.0	W/15331140-15331217,15331289-15331523,15331658-15331782,15331878-15332327,15332644-15332973,15333058-15333321	AT4G31650.1  CDS  gene_syn F28M20.160, F28M20_160  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcriptional factor B3 family protein  note transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT4G31640.1); Has 259 Blast hits to 134 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 259; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G31650.1p  transcript_id AT4G31650.1  protein_id AT4G31650.1p  transcript_id AT4G31650.1  
At4g31660	chr4:015334019	0.0	W/15334019-15334096,15334181-15334460,15334543-15334614,15334701-15334825,15334906-15335106	AT4G31660.1  CDS  gene_syn F28M20.150, F28M20_150  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcriptional factor B3 family protein  note transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT2G24700.1); Has 158 Blast hits to 110 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 158; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G31660.1p  transcript_id AT4G31660.1  protein_id AT4G31660.1p  transcript_id AT4G31660.1  
At4g31670	chr4:015339265	0.0	C/15339265-15339506,15338611-15338806,15338436-15338524,15338249-15338334,15337985-15338147,15337766-15337889,15337308-15337465,15337131-15337215,15336832-15337044,15336672-15336733,15336007-15336484	AT4G31670.1  CDS  gene_syn F28M20.140, F28M20_140, UBIQUITIN-SPECIFIC PROTEASE 18, UBP18  gene UBP18  go_component endomembrane system|GO:0012505||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_function cysteine-type endopeptidase activity|GO:0004197||ISS  go_function ubiquitin thiolesterase activity|GO:0004221||ISS  product UBP18 (UBIQUITIN-SPECIFIC PROTEASE 18); cysteine-type endopeptidase/ ubiquitin thiolesterase  note UBIQUITIN-SPECIFIC PROTEASE 18 (UBP18); FUNCTIONS IN: cysteine-type endopeptidase activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: UBP19 (UBIQUITIN-SPECIFIC PROTEASE 19); cysteine-type endopeptidase/ ubiquitin thiolesterase (TAIR:AT2G24640.1); Has 7197 Blast hits to 6335 proteins in 233 species: Archae - 2; Bacteria - 369; Metazoa - 3811; Fungi - 995; Plants - 557; Viruses - 7; Other Eukaryotes - 1456 (source: NCBI BLink).  protein_id AT4G31670.1p  transcript_id AT4G31670.1  protein_id AT4G31670.1p  transcript_id AT4G31670.1  
At4g31680	chr4:015342003	0.0	C/15342003-15342080,15341630-15341924,15341429-15341544,15341025-15341327,15340712-15340954,15340289-15340642	AT4G31680.1  CDS  gene_syn F28M20.130, F28M20_130  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcriptional factor B3 family protein  note transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT4G31690.1); Has 264 Blast hits to 174 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 264; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G31680.1p  transcript_id AT4G31680.1  protein_id AT4G31680.1p  transcript_id AT4G31680.1  
At4g31690	chr4:015345084	0.0	C/15345084-15345161,15344713-15345007,15344523-15344638,15344202-15344447,15343835-15344047,15343327-15343764	AT4G31690.1  CDS  gene_syn F28M20.120, F28M20_120  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcriptional factor B3 family protein  note transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast envelope; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT4G31680.1); Has 318 Blast hits to 197 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 318; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G31690.1p  transcript_id AT4G31690.1  protein_id AT4G31690.1p  transcript_id AT4G31690.1  
At4g31695	chr4:015345712	0.0	C/15345712-15345747	AT4G31695.1  tRNA  gene_syn 67186.TRNA-MET-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Met (anticodon: CAT)  transcript_id AT4G31695.1  
At4g31700	chr4:015347024	0.0	C/15347024-15347075,15346642-15346914,15346306-15346547	AT4G31700.2  CDS  gene_syn F28M20.110, F28M20_110, RIBOSOMAL PROTEIN S6, RPS6  gene RPS6  function Encodes a putative ribosomal protein S6 (rps6).  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product RPS6 (RIBOSOMAL PROTEIN S6); structural constituent of ribosome  note RIBOSOMAL PROTEIN S6 (RPS6); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S6e (InterPro:IPR001377); BEST Arabidopsis thaliana protein match is: EMB3010 (embryo defective 3010); structural constituent of ribosome (TAIR:AT5G10360.1); Has 648 Blast hits to 646 proteins in 230 species: Archae - 8; Bacteria - 0; Metazoa - 334; Fungi - 112; Plants - 79; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).  protein_id AT4G31700.2p  transcript_id AT4G31700.2  protein_id AT4G31700.2p  transcript_id AT4G31700.2  
At4g31700	chr4:015347709	0.0	C/15347709-15347714,15347558-15347622,15347231-15347288,15347024-15347132,15346642-15346914,15346306-15346547	AT4G31700.1  CDS  gene_syn F28M20.110, F28M20_110, RIBOSOMAL PROTEIN S6, RPS6  gene RPS6  function Encodes a putative ribosomal protein S6 (rps6).  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product RPS6 (RIBOSOMAL PROTEIN S6); structural constituent of ribosome  note RIBOSOMAL PROTEIN S6 (RPS6); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S6e (InterPro:IPR001377), Ribosomal protein S6, eukaryotic (InterPro:IPR014401); BEST Arabidopsis thaliana protein match is: EMB3010 (embryo defective 3010); structural constituent of ribosome (TAIR:AT5G10360.1); Has 847 Blast hits to 843 proteins in 306 species: Archae - 155; Bacteria - 0; Metazoa - 346; Fungi - 112; Plants - 80; Viruses - 0; Other Eukaryotes - 154 (source: NCBI BLink).  protein_id AT4G31700.1p  transcript_id AT4G31700.1  protein_id AT4G31700.1p  transcript_id AT4G31700.1  
At4g31710	chr4:015349121	0.0	W/15349121-15349451,15350240-15351517,15351672-15351962,15352046-15352091,15352134-15352452,15352531-15352962	AT4G31710.1  CDS  gene_syn ATGLR2.4, F28M20.100, F28M20_100, GLR2.4, GLUTAMATE RECEPTOR 2.4  gene ATGLR2.4  function member of Putative ligand-gated ion channel subunit family  go_component membrane|GO:0016020||IEA  go_process cellular calcium ion homeostasis|GO:0006874|11379626|NAS  go_process response to light stimulus|GO:0009416|11379626|NAS  go_process response to nematode|GO:0009624|16478044|IEP  go_function intracellular ligand-gated ion channel activity|GO:0005217||ISS  product ATGLR2.4; intracellular ligand-gated ion channel  note ATGLR2.4; FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus, response to nematode; LOCATED IN: membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: ATGLR2.1; intracellular ligand-gated ion channel (TAIR:AT5G27100.1); Has 3559 Blast hits to 3529 proteins in 401 species: Archae - 61; Bacteria - 719; Metazoa - 1877; Fungi - 0; Plants - 310; Viruses - 0; Other Eukaryotes - 592 (source: NCBI BLink).  protein_id AT4G31710.1p  transcript_id AT4G31710.1  protein_id AT4G31710.1p  transcript_id AT4G31710.1  
At4g31720	chr4:015355612	0.0	C/15355612-15355704,15355451-15355515,15354987-15355049,15354750-15354801,15354605-15354655,15354223-15354303	AT4G31720.1  CDS  gene_syn F28M20.90, F28M20_90, SALT TOLERANCE DURING GERMINATION 1, STG1, TAF10, TAFII15, TBP-ASSOCIATED FACTOR 10, TBP-ASSOCIATED FACTOR II 15  gene TAFII15  function Arabidopsis thaliana putative TBP-associated 15 kDa subunit protein (TAFII15)  go_component nucleus|GO:0005634||IEA  go_process transcription initiation|GO:0006352||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  go_component nucleus|GO:0005634||ISS  go_process transcription initiation|GO:0006352||ISS  go_function transcription factor activity|GO:0003700||ISS  product TAFII15 (TBP-ASSOCIATED FACTOR II 15); RNA polymerase II transcription factor/ transcription factor  note TBP-ASSOCIATED FACTOR II 15 (TAFII15); FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription factor activity; INVOLVED IN: transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID, 23-30 kDa subunit (InterPro:IPR003923); Has 274 Blast hits to 274 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 134; Fungi - 89; Plants - 32; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT4G31720.1p  transcript_id AT4G31720.1  protein_id AT4G31720.1p  transcript_id AT4G31720.1  
At4g31720	chr4:015355612	0.0	C/15355612-15355704,15355451-15355515,15354987-15355049,15354750-15354801,15354605-15354655,15354223-15354303	AT4G31720.2  CDS  gene_syn F28M20.90, F28M20_90, SALT TOLERANCE DURING GERMINATION 1, STG1, TAF10, TAFII15, TBP-ASSOCIATED FACTOR 10, TBP-ASSOCIATED FACTOR II 15  gene TAFII15  function Arabidopsis thaliana putative TBP-associated 15 kDa subunit protein (TAFII15)  go_component nucleus|GO:0005634||IEA  go_process transcription initiation|GO:0006352||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  go_component nucleus|GO:0005634||ISS  go_process transcription initiation|GO:0006352||ISS  go_function transcription factor activity|GO:0003700||ISS  product TAFII15 (TBP-ASSOCIATED FACTOR II 15); RNA polymerase II transcription factor/ transcription factor  note TBP-ASSOCIATED FACTOR II 15 (TAFII15); FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription factor activity; INVOLVED IN: transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID, 23-30 kDa subunit (InterPro:IPR003923); Has 274 Blast hits to 274 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 134; Fungi - 89; Plants - 32; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT4G31720.2p  transcript_id AT4G31720.2  protein_id AT4G31720.2p  transcript_id AT4G31720.2  
At4g31730	chr4:015361207	0.0	W/15361207-15361683	AT4G31730.1  CDS  gene_syn F28M20.80, F28M20_80, GDU1, GLUTAMINE DUMPER 1, GLUTAMINE DUMPER1  gene GDU1  function Glutamine dumper1 is a putative transmembrane protein. It is involved in glutamine secretion  go_component nucleus|GO:0005634|14617066|IDA  go_component integral to membrane|GO:0016021|15208395|ISS  go_process glutamine secretion|GO:0010585|15208395|IMP  go_function molecular_function|GO:0003674||ND  product GDU1 (GLUTAMINE DUMPER 1)  note GLUTAMINE DUMPER 1 (GDU1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: glutamine secretion; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: AtGDU4 (Arabidopsis thaliana GLUTAMINE DUMPER 4) (TAIR:AT2G24762.1); Has 58 Blast hits to 58 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G31730.1p  transcript_id AT4G31730.1  protein_id AT4G31730.1p  transcript_id AT4G31730.1  
At4g31740	chr4:015363778	0.0	W/15363778-15363865,15363922-15364349	AT4G31740.1  CDS  gene_syn F28M20.70, F28M20_70  go_component endomembrane system|GO:0012505||IEA  go_process vesicle docking during exocytosis|GO:0006904||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport, vesicle docking during exocytosis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); BEST Arabidopsis thaliana protein match is: ATSLY1; protein transporter (TAIR:AT2G17980.1); Has 263 Blast hits to 263 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 85; Plants - 32; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT4G31740.1p  transcript_id AT4G31740.1  protein_id AT4G31740.1p  transcript_id AT4G31740.1  
At4g31750	chr4:015367128	0.0	C/15367128-15367207,15366571-15366698,15366154-15366252,15365896-15366054,15365446-15365532,15365278-15365369,15364979-15365053,15364657-15364872	AT4G31750.1  CDS  gene_syn F28M20.60, F28M20_60, HOPW1-1-INTERACTING 2, WIN2  gene WIN2  function Encodes HopW1-1-Interacting protein 2 (WIN2). Interacts with the P. syringae effector HopW1-1. WIN2 has protein phosphatase activity. Modulates plant defenses against bacteria. Three WIN proteins are identified so far (WIN1: AT1G80600; WIN2: AT4G31750; WIN3: AT5G13320).  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid dephosphorylation|GO:0006470|18266921|IDA  go_process defense response to bacterium|GO:0042742|18266921|IMP  go_function protein serine/threonine phosphatase activity|GO:0004722|18266921|IDA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product WIN2 (HOPW1-1-INTERACTING 2); protein serine/threonine phosphatase  note HOPW1-1-INTERACTING 2 (WIN2); FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: defense response to bacterium, protein amino acid dephosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT5G24940.1); Has 5565 Blast hits to 5531 proteins in 636 species: Archae - 5; Bacteria - 1058; Metazoa - 1437; Fungi - 559; Plants - 1358; Viruses - 9; Other Eukaryotes - 1139 (source: NCBI BLink).  protein_id AT4G31750.1p  transcript_id AT4G31750.1  protein_id AT4G31750.1p  transcript_id AT4G31750.1  
At4g31760	chr4:015369503	0.0	C/15369503-15369724,15369243-15369422,15368848-15369013,15368260-15368672	AT4G31760.1  CDS  gene_syn F28M20.50, F28M20_50  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, embryo, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT2G24800.1); Has 3233 Blast hits to 3217 proteins in 249 species: Archae - 0; Bacteria - 4; Metazoa - 4; Fungi - 343; Plants - 2829; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT4G31760.1p  transcript_id AT4G31760.1  protein_id AT4G31760.1p  transcript_id AT4G31760.1  
At4g31770	chr4:015372300	0.0	C/15372300-15372422,15372049-15372206,15371847-15371968,15371487-15371680,15371223-15371405,15371018-15371136,15370784-15370917,15370579-15370698,15370296-15370399	AT4G31770.1  CDS  gene_syn F28M20.40, F28M20_40  go_process mRNA processing|GO:0006397||IEA  go_function hydrolase activity|GO:0016787||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_component cellular_component|GO:0005575||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product calcineurin-like phosphoesterase family protein  note calcineurin-like phosphoesterase family protein; FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on ester bonds, protein serine/threonine phosphatase activity; INVOLVED IN: mRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lariat debranching enzyme, C-terminal (InterPro:IPR007708), Metallophosphoesterase (InterPro:IPR004843); Has 452 Blast hits to 397 proteins in 153 species: Archae - 0; Bacteria - 12; Metazoa - 181; Fungi - 155; Plants - 28; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT4G31770.1p  transcript_id AT4G31770.1  protein_id AT4G31770.1p  transcript_id AT4G31770.1  
At4g31780	chr4:015374222	0.0	W/15374222-15374746,15375196-15375368,15375586-15375747,15375826-15375967,15376051-15376275,15376363-15376425,15376571-15376645,15376725-15376961	AT4G31780.2  CDS  gene_syn F11C18.2, MGD1, MGDA, MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 1, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE A  gene MGD1  function Encodes an A-type monogalactosyldiacylglycerol (MGDG) synthase. It represents the isoform responsible for the bulk of MGDG synthesis in Arabidopsis.  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast inner membrane|GO:0009706|11553816|IDA  go_component chloroplast envelope|GO:0009941|11553816|IMP  go_process glycolipid biosynthetic process|GO:0009247|11553816|IDA  go_process embryonic development|GO:0009790|17940034|IMP  go_process thylakoid membrane organization|GO:0010027|17940034|IMP  go_process galactolipid biosynthetic process|GO:0019375|10869420|IMP  go_function UDP-glycosyltransferase activity|GO:0008194|11553816|IDA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function UDP-galactosyltransferase activity|GO:0035250|15590685|TAS  go_function 1,2-diacylglycerol 3-beta-galactosyltransferase activity|GO:0046509|10869420|IMP  go_function 1,2-diacylglycerol 3-beta-galactosyltransferase activity|GO:0046509|11553816|IDA  product MGD1 (MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 1); 1,2-diacylglycerol 3-beta-galactosyltransferase/ UDP-galactosyltransferase/ UDP-glycosyltransferase/ transferase, transferring glycosyl groups  note MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 1 (MGD1); FUNCTIONS IN: 1,2-diacylglycerol 3-beta-galactosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups, UDP-galactosyltransferase activity; INVOLVED IN: embryonic development, thylakoid membrane organization, galactolipid biosynthetic process, glycolipid biosynthetic process; LOCATED IN: chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 28, C-terminal (InterPro:IPR007235), Monogalactosyldiacylglycerol synthase (InterPro:IPR009695); BEST Arabidopsis thaliana protein match is: MGDC; 1,2-diacylglycerol 3-beta-galactosyltransferase (TAIR:AT2G11810.1); Has 1179 Blast hits to 1179 proteins in 352 species: Archae - 0; Bacteria - 997; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).  protein_id AT4G31780.2p  transcript_id AT4G31780.2  protein_id AT4G31780.2p  transcript_id AT4G31780.2  
At4g31780	chr4:015374222	0.0	W/15374222-15374746,15375196-15375368,15375586-15375747,15375826-15375967,15376051-15376275,15376363-15376425,15376571-15376649,15376728-15376873	AT4G31780.1  CDS  gene_syn F11C18.2, MGD1, MGDA, MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 1, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE A  gene MGD1  function Encodes an A-type monogalactosyldiacylglycerol (MGDG) synthase. It represents the isoform responsible for the bulk of MGDG synthesis in Arabidopsis.  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast inner membrane|GO:0009706|11553816|IDA  go_component chloroplast envelope|GO:0009941|11553816|IMP  go_process glycolipid biosynthetic process|GO:0009247|11553816|IDA  go_process embryonic development|GO:0009790|17940034|IMP  go_process thylakoid membrane organization|GO:0010027|17940034|IMP  go_process galactolipid biosynthetic process|GO:0019375|10869420|IMP  go_function UDP-glycosyltransferase activity|GO:0008194|11553816|IDA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function UDP-galactosyltransferase activity|GO:0035250|15590685|TAS  go_function 1,2-diacylglycerol 3-beta-galactosyltransferase activity|GO:0046509|10869420|IMP  go_function 1,2-diacylglycerol 3-beta-galactosyltransferase activity|GO:0046509|11553816|IDA  product MGD1 (MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 1); 1,2-diacylglycerol 3-beta-galactosyltransferase/ UDP-galactosyltransferase/ UDP-glycosyltransferase/ transferase, transferring glycosyl groups  note MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 1 (MGD1); FUNCTIONS IN: 1,2-diacylglycerol 3-beta-galactosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups, UDP-galactosyltransferase activity; INVOLVED IN: embryonic development, thylakoid membrane organization, galactolipid biosynthetic process, glycolipid biosynthetic process; LOCATED IN: chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Monogalactosyldiacylglycerol synthase (InterPro:IPR009695), Glycosyl transferase, family 28, C-terminal (InterPro:IPR007235); BEST Arabidopsis thaliana protein match is: MGD2; 1,2-diacylglycerol 3-beta-galactosyltransferase/ UDP-galactosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT5G20410.1); Has 900 Blast hits to 900 proteins in 274 species: Archae - 0; Bacteria - 751; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT4G31780.1p  transcript_id AT4G31780.1  protein_id AT4G31780.1p  transcript_id AT4G31780.1  
At4g31790	chr4:015377479	0.0	W/15377479-15377628,15377716-15377840,15377972-15378530	AT4G31790.1  CDS  gene_syn F11C18.6  go_process metabolic process|GO:0008152||IEA  go_process peptidyl-diphthamide biosynthetic process from peptidyl-histidine|GO:0017183||IEA  go_function diphthine synthase activity|GO:0004164||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_process peptidyl-diphthamide biosynthetic process from peptidyl-histidine|GO:0017183||ISS  go_function diphthine synthase activity|GO:0004164||ISS  go_function methyltransferase activity|GO:0008168||ISS  product diphthine synthase, putative  (DPH5)  note diphthine synthase, putative (DPH5); FUNCTIONS IN: methyltransferase activity, diphthine synthase activity; INVOLVED IN: peptidyl-diphthamide biosynthetic process from peptidyl-histidine, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Diphthine synthase (InterPro:IPR004551), Tetrapyrrole methylase (InterPro:IPR000878), Tetrapyrrole methylase, subdomain 1 (InterPro:IPR014777), Tetrapyrrole methylase, subdomain 2 (InterPro:IPR014776); Has 751 Blast hits to 751 proteins in 237 species: Archae - 337; Bacteria - 22; Metazoa - 120; Fungi - 101; Plants - 21; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).  protein_id AT4G31790.1p  transcript_id AT4G31790.1  protein_id AT4G31790.1p  transcript_id AT4G31790.1  
At4g31790	chr4:015377479	0.0	W/15377479-15377628,15377716-15377840,15377972-15378530	AT4G31790.2  CDS  gene_syn F11C18.6  go_process metabolic process|GO:0008152||IEA  go_process peptidyl-diphthamide biosynthetic process from peptidyl-histidine|GO:0017183||IEA  go_function diphthine synthase activity|GO:0004164||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_process peptidyl-diphthamide biosynthetic process from peptidyl-histidine|GO:0017183||ISS  go_function diphthine synthase activity|GO:0004164||ISS  go_function methyltransferase activity|GO:0008168||ISS  product diphthine synthase, putative  (DPH5)  note diphthine synthase, putative (DPH5); FUNCTIONS IN: methyltransferase activity, diphthine synthase activity; INVOLVED IN: peptidyl-diphthamide biosynthetic process from peptidyl-histidine, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Diphthine synthase (InterPro:IPR004551), Tetrapyrrole methylase (InterPro:IPR000878), Tetrapyrrole methylase, subdomain 1 (InterPro:IPR014777), Tetrapyrrole methylase, subdomain 2 (InterPro:IPR014776); Has 751 Blast hits to 751 proteins in 237 species: Archae - 337; Bacteria - 22; Metazoa - 120; Fungi - 101; Plants - 21; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).  protein_id AT4G31790.2p  transcript_id AT4G31790.2  protein_id AT4G31790.2p  transcript_id AT4G31790.2  
At4g31800	chr4:015383296	0.0	W/15383296-15383364,15383489-15383551,15383816-15384202,15384295-15384411,15384516-15384812	AT4G31800.1  CDS  gene_syn ATWRKY18, F11C18.16, WRKY18  gene WRKY18  function Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Constitutive expression of WRKY18 enhanced resistance to P. syringae, but its coexpression with WRKY40 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.  go_component nucleus|GO:0005634|16603654|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to salicylic acid stimulus|GO:0009751|12602888|IEP  go_process response to chitin|GO:0010200|17722694|IEP  go_process regulation of defense response|GO:0031347|12068113|IMP  go_process regulation of defense response|GO:0031347|17096590|IMP  go_process defense response to bacterium|GO:0042742|12602888|IEP  go_process regulation of defense response to virus by host|GO:0050691|17185563|IGI  go_process defense response to fungus|GO:0050832|16603654|IEP  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12068113|IDA  go_function transcription factor activity|GO:0003700|17096590|IMP  go_function transcription factor activity|GO:0003700||ISS  product WRKY18; transcription factor  note WRKY18; FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY60; transcription factor (TAIR:AT2G25000.1); Has 1943 Blast hits to 1667 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 5; Plants - 1917; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT4G31800.1p  transcript_id AT4G31800.1  protein_id AT4G31800.1p  transcript_id AT4G31800.1  
At4g31800	chr4:015383296	0.0	W/15383296-15383364,15383492-15383551,15383816-15384202,15384295-15384411,15384516-15384812	AT4G31800.2  CDS  gene_syn ATWRKY18, F11C18.16, WRKY18  gene WRKY18  function Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Constitutive expression of WRKY18 enhanced resistance to P. syringae, but its coexpression with WRKY40 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.  go_component nucleus|GO:0005634|16603654|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to salicylic acid stimulus|GO:0009751|12602888|IEP  go_process response to chitin|GO:0010200|17722694|IEP  go_process regulation of defense response|GO:0031347|12068113|IMP  go_process regulation of defense response|GO:0031347|17096590|IMP  go_process defense response to bacterium|GO:0042742|12602888|IEP  go_process regulation of defense response to virus by host|GO:0050691|17185563|IGI  go_process defense response to fungus|GO:0050832|16603654|IEP  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12068113|IDA  go_function transcription factor activity|GO:0003700|17096590|IMP  go_function transcription factor activity|GO:0003700||ISS  product WRKY18; transcription factor  note WRKY18; FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY60; transcription factor (TAIR:AT2G25000.1); Has 1943 Blast hits to 1667 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 1917; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT4G31800.2p  transcript_id AT4G31800.2  protein_id AT4G31800.2p  transcript_id AT4G31800.2  
At4g31805	chr4:015385454	0.0	W/15385454-15385715,15385896-15386317,15386425-15386775	AT4G31805.1  CDS  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  product WRKY family transcription factor  note WRKY family transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT5G10890.1); Has 62 Blast hits to 60 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 12; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT4G31805.1p  transcript_id AT4G31805.1  protein_id AT4G31805.1p  transcript_id AT4G31805.1  
At4g31810	chr4:015390165	0.0	C/15390165-15390290,15389899-15389979,15389730-15389798,15389566-15389629,15389349-15389428,15389046-15389129,15388697-15388781,15388453-15388538,15388251-15388372,15388110-15388170,15387897-15387995,15387715-15387816,15387600-15387641,15387365-15387493	AT4G31810.1  CDS  gene_syn F11C18.10, F11C18_10  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process fatty acid beta-oxidation|GO:0006635||ISS  go_function 3-hydroxyisobutyryl-CoA hydrolase activity|GO:0003860||ISS  product enoyl-CoA hydratase/isomerase family protein  note enoyl-CoA hydratase/isomerase family protein; FUNCTIONS IN: 3-hydroxyisobutyryl-CoA hydrolase activity, catalytic activity; INVOLVED IN: fatty acid beta-oxidation, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: enoyl-CoA hydratase/isomerase family protein (TAIR:AT3G60510.1); Has 15447 Blast hits to 15442 proteins in 1087 species: Archae - 153; Bacteria - 9368; Metazoa - 927; Fungi - 405; Plants - 335; Viruses - 0; Other Eukaryotes - 4259 (source: NCBI BLink).  protein_id AT4G31810.1p  transcript_id AT4G31810.1  protein_id AT4G31810.1p  transcript_id AT4G31810.1  
At4g31820	chr4:015393566	0.0	C/15393566-15393627,15392561-15392630,15391334-15392452,15390788-15391252	AT4G31820.1  CDS  gene_syn ENHANCER OF PINOID, ENP, F11C18.20, F11C18_20, MAB4, MACCHI-BOU 4, NAKED PINS IN YUC MUTANTS 1, NPY1  gene ENP  function A member of the NPY family genes (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Encodes a protein with similarity to NHP3. Contains BTB/POZ domain. Promoter region has canonical auxin response element binding site and Wus binding site. Co-localizes to the late endosome with PID. Regulates cotyledon development through control of PIN1 polarity in concert with PID. Also involved in sepal and gynoecia development.  go_component plasma membrane|GO:0005886|17644812|IDA  go_function signal transducer activity|GO:0004871||IEA  go_function protein binding|GO:0005515||IEA  go_component late endosome|GO:0005770|17913786|IDA  go_process response to light stimulus|GO:0009416||ISS  go_process flower development|GO:0009908|19075219|IGI  go_process positive regulation of flower development|GO:0009911|18000043|IGI  go_process inflorescence development|GO:0010229|18000043|IGI  go_process basipetal auxin transport|GO:0010540|17913786|IGI  go_process apical protein localization|GO:0045176|16107478|IGI  go_process cotyledon development|GO:0048825|16107478|IGI  go_process cotyledon development|GO:0048825|18000043|IGI  go_process phyllome development|GO:0048827|18000043|IGI  go_function signal transducer activity|GO:0004871||ISS  product ENP (ENHANCER OF PINOID); protein binding / signal transducer  note ENHANCER OF PINOID (ENP); FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: in 8 processes; LOCATED IN: late endosome, plasma membrane; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: NPY3 (NAKED PINS IN YUC MUTANTS 3); protein binding / signal transducer (TAIR:AT5G67440.1); Has 449 Blast hits to 433 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 2; Plants - 431; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT4G31820.1p  transcript_id AT4G31820.1  protein_id AT4G31820.1p  transcript_id AT4G31820.1  
At4g31830	chr4:015400803	0.0	C/15400803-15401105	AT4G31830.1  CDS  gene_syn F11C18.30, F11C18_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 24 Blast hits to 24 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G31830.1p  transcript_id AT4G31830.1  protein_id AT4G31830.1p  transcript_id AT4G31830.1  
At4g31840	chr4:015401798	0.0	W/15401798-15401981,15402077-15402426	AT4G31840.1  CDS  gene_syn F11C18.40, F11C18_40  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function copper ion binding|GO:0005507||ISS  product plastocyanin-like domain-containing protein  note plastocyanin-like domain-containing protein; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: plastocyanin-like domain-containing protein (TAIR:AT2G25060.1); Has 804 Blast hits to 795 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 804; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G31840.1p  transcript_id AT4G31840.1  protein_id AT4G31840.1p  transcript_id AT4G31840.1  
At4g31850	chr4:015403020	0.0	W/15403020-15406358	AT4G31850.1  CDS  gene_syn F11C18.50, F11C18_50, PGR3, PROTON GRADIENT REGULATION 3  gene PGR3  function encodes a protein containing 27 pentatrico-peptide repeat (PPR) motifs  go_process biological_process|GO:0008150||ND  product PGR3 (PROTON GRADIENT REGULATION 3)  note PROTON GRADIENT REGULATION 3 (PGR3); INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G62910.1); Has 44304 Blast hits to 6340 proteins in 204 species: Archae - 13; Bacteria - 38; Metazoa - 1315; Fungi - 1352; Plants - 38980; Viruses - 0; Other Eukaryotes - 2606 (source: NCBI BLink).  protein_id AT4G31850.1p  transcript_id AT4G31850.1  protein_id AT4G31850.1p  transcript_id AT4G31850.1  
At4g31860	chr4:015408473	0.0	C/15408473-15408589,15408310-15408373,15408053-15408161,15407825-15407978,15407612-15407737,15407405-15407528,15407246-15407322,15407116-15407172	AT4G31860.2  CDS  gene_syn F11C18.60, F11C18_60  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT2G25070.1); Has 4064 Blast hits to 3913 proteins in 237 species: Archae - 2; Bacteria - 12; Metazoa - 1375; Fungi - 451; Plants - 1250; Viruses - 7; Other Eukaryotes - 967 (source: NCBI BLink).  protein_id AT4G31860.2p  transcript_id AT4G31860.2  protein_id AT4G31860.2p  transcript_id AT4G31860.2  
At4g31860	chr4:015408473	0.0	C/15408473-15408589,15408310-15408373,15408053-15408161,15407825-15407978,15407612-15407737,15407405-15407528,15407246-15407322,15407120-15407172,15406980-15407034,15406685-15406879	AT4G31860.1  CDS  gene_syn F11C18.60, F11C18_60  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT2G25070.1); Has 4492 Blast hits to 4328 proteins in 297 species: Archae - 2; Bacteria - 128; Metazoa - 1456; Fungi - 538; Plants - 1338; Viruses - 7; Other Eukaryotes - 1023 (source: NCBI BLink).  protein_id AT4G31860.1p  transcript_id AT4G31860.1  protein_id AT4G31860.1p  transcript_id AT4G31860.1  
At4g31870	chr4:015410205	0.0	W/15410205-15410450,15410636-15410712,15410809-15410870,15410968-15411086,15411168-15411335,15411588-15411617	AT4G31870.1  CDS  gene_syn ATGPX7, F11C18.70, F11C18_70, glutathione peroxidase 7  gene ATGPX7  function Encodes glutathione peroxidase.  go_process response to oxidative stress|GO:0006979||IEA  go_function glutathione peroxidase activity|GO:0004602||IEA  go_component chloroplast|GO:0009507|14617062|ISS  go_function glutathione peroxidase activity|GO:0004602||ISS  product ATGPX7 (glutathione peroxidase 7); glutathione peroxidase  note glutathione peroxidase 7 (ATGPX7); FUNCTIONS IN: glutathione peroxidase activity; INVOLVED IN: response to oxidative stress; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336), Glutathione peroxidase (InterPro:IPR000889); BEST Arabidopsis thaliana protein match is: ATGPX1 (GLUTATHIONE PEROXIDASE 1); glutathione peroxidase (TAIR:AT2G25080.1); Has 5646 Blast hits to 5645 proteins in 1020 species: Archae - 2; Bacteria - 2123; Metazoa - 692; Fungi - 136; Plants - 255; Viruses - 8; Other Eukaryotes - 2430 (source: NCBI BLink).  protein_id AT4G31870.1p  transcript_id AT4G31870.1  protein_id AT4G31870.1p  transcript_id AT4G31870.1  
At4g31875	chr4:015411856	0.0	C/15411856-15412272	AT4G31875.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G31875.1p  transcript_id AT4G31875.1  protein_id AT4G31875.1p  transcript_id AT4G31875.1  
At4g31877	chr4:015413319	0.0	C/15413319-15415873	AT4G31877.1  miRNA  gene_syn MIR156C  gene MIR156C  function Encodes a microRNA that targets several SPL family members, including SPL3,4, and 5. By regulating the expression of SPL3 (and probably also SPL4 and SPL5), this microRNA regulates vegetative phase change. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGACAGAAGAGAGUGAGCAC  go_process gene silencing by miRNA|GO:0035195|15851028|IDA  go_function molecular_function|GO:0003674||ND  product MIR156C; miRNA  note expressed protein  transcript_id AT4G31877.1  
At4g31880	chr4:015423838	0.0	C/15423838-15423939,15423351-15423554,15423084-15423265,15422625-15422751,15422358-15422549,15422203-15422241,15421249-15422094,15421044-15421157,15420799-15420857,15420571-15420622,15420330-15420413,15420203-15420252,15420036-15420098,15419435-15419942	AT4G31880.1  CDS  gene_syn F11C18.80, F11C18_80  go_component chloroplast|GO:0009507|15028209|IDA  go_component cytosol|GO:0005829|18433157|IDA  product unknown protein  note LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: binding (TAIR:AT1G15940.1); Has 114836 Blast hits to 56273 proteins in 1914 species: Archae - 187; Bacteria - 15478; Metazoa - 53116; Fungi - 16017; Plants - 4342; Viruses - 719; Other Eukaryotes - 24977 (source: NCBI BLink).  protein_id AT4G31880.1p  transcript_id AT4G31880.1  protein_id AT4G31880.1p  transcript_id AT4G31880.1  
At4g31890	chr4:015428394	0.0	C/15428394-15429049,15427290-15428190	AT4G31890.1  CDS  gene_syn F11C18.90, F11C18_90  go_component chloroplast|GO:0009507||IEA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product armadillo/beta-catenin repeat family protein  note armadillo/beta-catenin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein (TAIR:AT2G25130.1); Has 1122 Blast hits to 1018 proteins in 145 species: Archae - 0; Bacteria - 0; Metazoa - 310; Fungi - 162; Plants - 568; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT4G31890.1p  transcript_id AT4G31890.1  protein_id AT4G31890.1p  transcript_id AT4G31890.1  
At4g31895	chr4:015430224	0.0	C/15430224-15430297	AT4G31895.1  tRNA  gene_syn 67187.TRNA-THR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Thr (anticodon: AGT)  transcript_id AT4G31895.1  
At4g31900	chr4:015431528	0.0	W/15431528-15431647,15431714-15431871,15431994-15432167,15432377-15432591,15432673-15432768,15432864-15433000,15433082-15433240,15433336-15433443,15433601-15433651,15433757-15433844,15433946-15434091,15434202-15434299,15434389-15434527,15434757-15434926,15435096-15435162,15435258-15435371,15435470-15435579,15435702-15435783,15436028-15436222,15436315-15436492,15436589-15436691,15436787-15436861,15436959-15437023,15437107-15437207,15437414-15437541,15437643-15437823,15437925-15438015,15438101-15438174,15438258-15438443	AT4G31900.1  CDS  gene_syn F11C18.100, F11C18_100  go_component chromatin|GO:0000785||IEA  go_component nucleus|GO:0005634||IEA  go_process chromatin assembly or disassembly|GO:0006333||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function chromatin binding|GO:0003682||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function transcription regulator activity|GO:0030528||ISS  product chromatin remodeling factor, putative  note chromatin remodeling factor, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin, nucleus; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 (InterPro:IPR009463), Protein of unknown function DUF1086 (InterPro:IPR009462), Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: PKL (PICKLE); ATPase/ DNA binding / DNA helicase (TAIR:AT2G25170.1); Has 13360 Blast hits to 11380 proteins in 1202 species: Archae - 105; Bacteria - 3163; Metazoa - 3321; Fungi - 2745; Plants - 775; Viruses - 156; Other Eukaryotes - 3095 (source: NCBI BLink).  protein_id AT4G31900.1p  transcript_id AT4G31900.1  protein_id AT4G31900.1p  transcript_id AT4G31900.1  
At4g31910	chr4:015441125	0.0	W/15441125-15441565,15442586-15443017,15443193-15443696	AT4G31910.1  CDS  gene_syn F11C18.110, F11C18_110  go_component nucleus|GO:0005634|14617066|IDA  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT5G41040.2); Has 1277 Blast hits to 1257 proteins in 105 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 18; Plants - 1256; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G31910.1p  transcript_id AT4G31910.1  protein_id AT4G31910.1p  transcript_id AT4G31910.1  
At4g31920	chr4:015446640	0.0	C/15446640-15446766,15446031-15446183,15445588-15445926,15445431-15445507,15444482-15445336,15444290-15444397	AT4G31920.1  CDS  gene_syn ARABIDOPSIS RESPONSE REGULATOR 10, ARR10, F11C18.3  gene ARR10  function Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway.  go_component nucleus|GO:0005634|15173562|IDA  go_process response to cytokinin stimulus|GO:0009735|16227453|IGI  go_process response to cytokinin stimulus|GO:0009735|18723577|IGI  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_process cytokinin mediated signaling|GO:0009736|18723577|IGI  go_process regulation of chlorophyll biosynthetic process|GO:0010380|18723577|IGI  go_process regulation of anthocyanin metabolic process|GO:0031537|18723577|IGI  go_process shoot development|GO:0048367|18723577|IGI  go_process primary root development|GO:0080022|18723577|IGI  go_function two-component response regulator activity|GO:0000156|11574878|ISS  go_function two-component response regulator activity|GO:0000156|12068096|ISS  go_function two-component response regulator activity|GO:0000156||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12215502|IDA  product ARR10 (ARABIDOPSIS RESPONSE REGULATOR 10); transcription factor/ two-component response regulator  note ARABIDOPSIS RESPONSE REGULATOR 10 (ARR10); FUNCTIONS IN: transcription factor activity, two-component response regulator activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Response regulator, plant B-type (InterPro:IPR017053), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), CheY-like (InterPro:IPR011006), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Signal transduction response regulator, receiver region (InterPro:IPR001789), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: ARR12 (ARABIDOPSIS RESPONSE REGULATOR 12); transcription factor/ two-component response regulator (TAIR:AT2G25180.1); Has 69587 Blast hits to 68726 proteins in 1785 species: Archae - 549; Bacteria - 58485; Metazoa - 27; Fungi - 433; Plants - 1445; Viruses - 4; Other Eukaryotes - 8644 (source: NCBI BLink).  protein_id AT4G31920.1p  transcript_id AT4G31920.1  protein_id AT4G31920.1p  transcript_id AT4G31920.1  
At4g31930	chr4:015450589	0.0	C/15450589-15450804,15450015-15450343,15449710-15449869	AT4G31930.1  CDS  gene_syn F11C18.4  go_component mitochondrion|GO:0005739||IEA  go_component mitochondrial matrix|GO:0005759||IEA  go_component mitochondrial matrix|GO:0005759||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial glycoprotein family protein / MAM33 family protein  note mitochondrial glycoprotein family protein / MAM33 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, mitochondrial matrix; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial glycoprotein (InterPro:IPR003428); BEST Arabidopsis thaliana protein match is: mitochondrial glycoprotein family protein / MAM33 family protein (TAIR:AT1G80720.1); Has 212 Blast hits to 212 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 66; Plants - 109; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT4G31930.1p  transcript_id AT4G31930.1  protein_id AT4G31930.1p  transcript_id AT4G31930.1  
At4g31940	chr4:015452040	0.0	W/15452040-15452511,15452611-15453086,15453340-15453966	AT4G31940.1  CDS  gene_syn CYP82C4, F11C18.7  gene CYP82C4  function member of CYP82C  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP82C4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP82C4; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP82C2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G31970.1); Has 23810 Blast hits to 23685 proteins in 1277 species: Archae - 21; Bacteria - 2218; Metazoa - 10374; Fungi - 4573; Plants - 5669; Viruses - 3; Other Eukaryotes - 952 (source: NCBI BLink).  protein_id AT4G31940.1p  transcript_id AT4G31940.1  protein_id AT4G31940.1p  transcript_id AT4G31940.1  
At4g31950	chr4:015455163	0.0	W/15455163-15455598,15455694-15456169,15456464-15457090	AT4G31950.1  CDS  gene_syn CYP82C3, F11C18.9  gene CYP82C3  function member of CYP82C  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP82C3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP82C3; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP82C4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G31940.1); Has 23467 Blast hits to 23370 proteins in 1272 species: Archae - 30; Bacteria - 2198; Metazoa - 10319; Fungi - 4343; Plants - 5606; Viruses - 3; Other Eukaryotes - 968 (source: NCBI BLink).  protein_id AT4G31950.1p  transcript_id AT4G31950.1  protein_id AT4G31950.1p  transcript_id AT4G31950.1  
At4g31960	chr4:015459227	0.0	C/15459227-15459586	AT4G31960.1  CDS  gene_syn F11C18.11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G31960.1p  transcript_id AT4G31960.1  protein_id AT4G31960.1p  transcript_id AT4G31960.1  
At4g31970	chr4:015462408	0.0	W/15462408-15462879,15462979-15463451,15463732-15464358	AT4G31970.1  CDS  gene_syn CYP82C2, F11C18.12  gene CYP82C2  function member of CYP82C  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP82C2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP82C2; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP82C4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G31940.1); Has 23518 Blast hits to 23395 proteins in 1280 species: Archae - 32; Bacteria - 2295; Metazoa - 10358; Fungi - 4186; Plants - 5705; Viruses - 3; Other Eukaryotes - 939 (source: NCBI BLink).  protein_id AT4G31970.1p  transcript_id AT4G31970.1  protein_id AT4G31970.1p  transcript_id AT4G31970.1  
At4g31980	chr4:015464905	0.0	W/15464905-15465043,15465423-15465710,15465797-15466101,15467390-15467429,15467934-15469204	AT4G31980.1  CDS  gene_syn F11C18.13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11290.1); Has 1056 Blast hits to 1005 proteins in 140 species: Archae - 0; Bacteria - 2; Metazoa - 189; Fungi - 58; Plants - 676; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).  protein_id AT4G31980.1p  transcript_id AT4G31980.1  protein_id AT4G31980.1p  transcript_id AT4G31980.1  
At4g31985	chr4:015469931	0.0	W/15469931-15469933,15470088-15470191,15470318-15470366	AT4G31985.1  CDS  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L39 (RPL39C)  note 60S ribosomal protein L39 (RPL39C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L39e (InterPro:IPR000077); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L39 (RPL39B) (TAIR:AT3G02190.1); Has 591 Blast hits to 591 proteins in 225 species: Archae - 151; Bacteria - 0; Metazoa - 212; Fungi - 79; Plants - 70; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT4G31985.1p  transcript_id AT4G31985.1  protein_id AT4G31985.1p  transcript_id AT4G31985.1  
At4g31990	chr4:015473462	0.0	C/15473462-15473521,15473319-15473369,15473001-15473195,15472888-15472926,15472714-15472803,15472508-15472616,15472313-15472422,15471962-15472105,15471703-15471869,15471300-15471564,15471074-15471205	AT4G31990.1  CDS  gene_syn AAT3, ASP5, ASPARTATE AMINOTRANSFERASE, ASPARTATE AMINOTRANSFERASE 5, ASPARTATE AMINOTRANSFERASE DEFICIENT 3, ATAAT1, F11C18.15  gene ASP5  function encodes a plastid-localized aspartate aminotransferase  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component chloroplast|GO:0009507|7766905|IDA  go_component plastid|GO:0009536|9535706|IDA  go_component stromule|GO:0010319|16923014|IDA  go_process response to cold|GO:0009409|16923014|IEP  go_function L-aspartate:2-oxoglutarate aminotransferase activity|GO:0004069|7766905|IDA  product ASP5 (ASPARTATE AMINOTRANSFERASE 5); L-aspartate:2-oxoglutarate aminotransferase  note ASPARTATE AMINOTRANSFERASE 5 (ASP5); FUNCTIONS IN: L-aspartate:2-oxoglutarate aminotransferase activity; INVOLVED IN: response to cadmium ion, response to cold; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase, class I and II (InterPro:IPR004839), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Aspartate/other aminotransferase (InterPro:IPR000796), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: ASP2 (ASPARTATE AMINOTRANSFERASE 2); L-aspartate:2-oxoglutarate aminotransferase (TAIR:AT5G19550.1); Has 3587 Blast hits to 3583 proteins in 832 species: Archae - 2; Bacteria - 2054; Metazoa - 395; Fungi - 264; Plants - 316; Viruses - 0; Other Eukaryotes - 556 (source: NCBI BLink).  protein_id AT4G31990.1p  transcript_id AT4G31990.1  protein_id AT4G31990.1p  transcript_id AT4G31990.1  
At4g31990	chr4:015473462	0.0	C/15473462-15473521,15473319-15473369,15473001-15473195,15472888-15472926,15472714-15472803,15472508-15472616,15472313-15472422,15471962-15472105,15471703-15471869,15471300-15471564,15471074-15471205	AT4G31990.2  CDS  gene_syn AAT3, ASP5, ASPARTATE AMINOTRANSFERASE, ASPARTATE AMINOTRANSFERASE 5, ASPARTATE AMINOTRANSFERASE DEFICIENT 3, ATAAT1, F11C18.15  gene ASP5  function encodes a plastid-localized aspartate aminotransferase  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component chloroplast|GO:0009507|7766905|IDA  go_component plastid|GO:0009536|9535706|IDA  go_component stromule|GO:0010319|16923014|IDA  go_process response to cold|GO:0009409|16923014|IEP  go_function L-aspartate:2-oxoglutarate aminotransferase activity|GO:0004069|7766905|IDA  product ASP5 (ASPARTATE AMINOTRANSFERASE 5); L-aspartate:2-oxoglutarate aminotransferase  note ASPARTATE AMINOTRANSFERASE 5 (ASP5); FUNCTIONS IN: L-aspartate:2-oxoglutarate aminotransferase activity; INVOLVED IN: response to cadmium ion, response to cold; LOCATED IN: apoplast, stromule, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase, class I and II (InterPro:IPR004839), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Aspartate/other aminotransferase (InterPro:IPR000796), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: ASP2 (ASPARTATE AMINOTRANSFERASE 2); L-aspartate:2-oxoglutarate aminotransferase (TAIR:AT5G19550.1); Has 3587 Blast hits to 3583 proteins in 832 species: Archae - 2; Bacteria - 2054; Metazoa - 395; Fungi - 264; Plants - 316; Viruses - 0; Other Eukaryotes - 556 (source: NCBI BLink).  protein_id AT4G31990.2p  transcript_id AT4G31990.2  protein_id AT4G31990.2p  transcript_id AT4G31990.2  
At4g31990	chr4:015473462	0.0	C/15473462-15473521,15473319-15473369,15473001-15473195,15472888-15472926,15472714-15472803,15472508-15472616,15472313-15472422,15471962-15472105,15471703-15471869,15471300-15471564,15471083-15471205,15470876-15470911	AT4G31990.3  CDS  gene_syn AAT3, ASP5, ASPARTATE AMINOTRANSFERASE, ASPARTATE AMINOTRANSFERASE 5, ASPARTATE AMINOTRANSFERASE DEFICIENT 3, ATAAT1, F11C18.15  gene ASP5  function encodes a plastid-localized aspartate aminotransferase  go_component chloroplast|GO:0009507|18431481|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component chloroplast|GO:0009507|7766905|IDA  go_component plastid|GO:0009536|9535706|IDA  go_component stromule|GO:0010319|16923014|IDA  go_process response to cold|GO:0009409|16923014|IEP  go_function L-aspartate:2-oxoglutarate aminotransferase activity|GO:0004069|7766905|IDA  product ASP5 (ASPARTATE AMINOTRANSFERASE 5); L-aspartate:2-oxoglutarate aminotransferase  note ASPARTATE AMINOTRANSFERASE 5 (ASP5); FUNCTIONS IN: L-aspartate:2-oxoglutarate aminotransferase activity; INVOLVED IN: response to cadmium ion, response to cold; LOCATED IN: apoplast, stromule, chloroplast, plastid; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Aspartate/other aminotransferase (InterPro:IPR000796), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: ASP2 (ASPARTATE AMINOTRANSFERASE 2); L-aspartate:2-oxoglutarate aminotransferase (TAIR:AT5G19550.1); Has 3587 Blast hits to 3583 proteins in 832 species: Archae - 2; Bacteria - 2054; Metazoa - 395; Fungi - 264; Plants - 316; Viruses - 0; Other Eukaryotes - 556 (source: NCBI BLink).  protein_id AT4G31990.3p  transcript_id AT4G31990.3  protein_id AT4G31990.3p  transcript_id AT4G31990.3  
At4g32000	chr4:015476514	0.0	C/15476514-15476655,15476096-15476257,15475758-15475966,15475543-15475675,15475323-15475386,15475131-15475227,15474901-15475003,15474500-15474618,15474321-15474410,15474083-15474220	AT4G32000.1  CDS  gene_syn F10N7.190, F10N7_190  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT2G25220.1); Has 91100 Blast hits to 89969 proteins in 3068 species: Archae - 56; Bacteria - 8179; Metazoa - 39619; Fungi - 7321; Plants - 19613; Viruses - 536; Other Eukaryotes - 15776 (source: NCBI BLink).  protein_id AT4G32000.1p  transcript_id AT4G32000.1  protein_id AT4G32000.1p  transcript_id AT4G32000.1  
At4g32010	chr4:015481231	0.0	W/15481231-15481349,15481533-15481614,15481703-15481804,15481901-15482427,15482517-15482613,15482707-15482881,15483070-15483146,15483283-15483600,15483688-15483737,15483862-15483975,15484140-15484207,15484284-15484897	AT4G32010.1  CDS  gene_syn F10N7.180, F10N7_180, HSI2-L1, HSI2-LIKE 1, HSL1, VAL2, VP1/ABI3-LIKE 2  gene HSL1  go_process positive regulation of seed germination|GO:0010030|17267611|IGI  go_process seed maturation|GO:0010431|17267611|IGI  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product HSL1 (HSI2-LIKE 1); transcription factor  note HSI2-LIKE 1 (HSL1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: seed maturation, positive regulation of seed germination, regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: HSI2 (HIGH-LEVEL EXPRESSION OF SUGAR-INDUCIBLE GENE 2); transcription factor/ transcription repressor (TAIR:AT2G30470.1); Has 777 Blast hits to 763 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 0; Plants - 645; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT4G32010.1p  transcript_id AT4G32010.1  protein_id AT4G32010.1p  transcript_id AT4G32010.1  
At4g32020	chr4:015488076	0.0	W/15488076-15488621	AT4G32020.1  CDS  gene_syn F10N7.170, F10N7_170  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25250.1); Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 5; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G32020.1p  transcript_id AT4G32020.1  protein_id AT4G32020.1p  transcript_id AT4G32020.1  
At4g32030	chr4:015490903	0.0	W/15490903-15491286,15492353-15492409,15492505-15492567,15492647-15492715,15492819-15493007	AT4G32030.1  CDS  gene_syn F10N7.160, F10N7_160  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; Has 35 Blast hits to 33 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G32030.1p  transcript_id AT4G32030.1  protein_id AT4G32030.1p  transcript_id AT4G32030.1  
At4g32030	chr4:015490903	0.0	W/15490903-15491286,15492353-15492409,15492505-15492678	AT4G32030.2  CDS  gene_syn F10N7.160, F10N7_160  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; Has 24 Blast hits to 24 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G32030.2p  transcript_id AT4G32030.2  protein_id AT4G32030.2p  transcript_id AT4G32030.2  
At4g32040	chr4:015494127	0.0	W/15494127-15494669,15495054-15495174,15495267-15495466,15495556-15495687,15495769-15495908,15495994-15496009	AT4G32040.1  CDS  gene_syn F10N7.150, F10N7_150, KNAT5, KNOTTED1-LIKE HOMEOBOX GENE 5, TRANSCRIPTION FACTOR  gene KNAT5  function A member of Class II KN1-like homeodomain transcription factors factors (together with KNAT3 and KNAT4), with greatest homology to the maize knox1 homeobox protein. Regulates photomorphogenic responses and represses late steps in gibberellin biosynthesis. KNAT5 promoter activity showed cell-type specific pattern along longitudinal root axis, primarily in the epidermis of the distal end of primary root elongation zone.  go_component nucleus|GO:0005634|16463096|IDA  go_process detection of ethylene stimulus|GO:0009727|16463096|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|8980519|ISS  product KNAT5 (KNOTTED1-LIKE HOMEOBOX GENE 5); transcription activator/ transcription factor  note KNOTTED1-LIKE HOMEOBOX GENE 5 (KNAT5); FUNCTIONS IN: transcription factor activity, transcription activator activity; INVOLVED IN: detection of ethylene stimulus; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: KNOX2 (InterPro:IPR005541), ELK (InterPro:IPR005539), Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), KNOX1 (InterPro:IPR005540), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3); transcription activator/ transcription factor (TAIR:AT5G25220.2); Has 5273 Blast hits to 5272 proteins in 259 species: Archae - 0; Bacteria - 0; Metazoa - 1780; Fungi - 177; Plants - 3217; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).  protein_id AT4G32040.1p  transcript_id AT4G32040.1  protein_id AT4G32040.1p  transcript_id AT4G32040.1  
At4g32050	chr4:015496620	0.0	W/15496620-15496815,15496953-15497103,15497240-15497376,15497556-15497659,15497762-15497857,15498129-15498222,15498366-15498480,15498570-15498766,15499022-15499113,15499201-15499256,15499435-15499524,15499624-15499723,15499890-15499994,15500082-15500151,15500258-15500409,15500500-15500542,15500659-15500717	AT4G32050.1  CDS  gene_syn F10N7.130, F10N7_130  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product neurochondrin family protein  note neurochondrin family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), Neurochondrin (InterPro:IPR008709); Has 126 Blast hits to 126 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 96; Fungi - 5; Plants - 20; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G32050.1p  transcript_id AT4G32050.1  protein_id AT4G32050.1p  transcript_id AT4G32050.1  
At4g32060	chr4:015501134	0.0	W/15501134-15501539,15501627-15501694,15501891-15502114,15502218-15502301,15502512-15502725,15502821-15503117,15503231-15503302	AT4G32060.2  CDS  gene_syn F10N7.140, F10N7_140  go_function calcium ion binding|GO:0005509||IEA  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); Has 868 Blast hits to 850 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 707; Fungi - 54; Plants - 46; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT4G32060.2p  transcript_id AT4G32060.2  protein_id AT4G32060.2p  transcript_id AT4G32060.2  
At4g32060	chr4:015501134	0.0	W/15501134-15501539,15501627-15501694,15501891-15502114,15502218-15502301,15502512-15502725,15502821-15503321	AT4G32060.1  CDS  gene_syn F10N7.140, F10N7_140  go_function calcium ion binding|GO:0005509||IEA  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); Has 902 Blast hits to 878 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 729; Fungi - 55; Plants - 46; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT4G32060.1p  transcript_id AT4G32060.1  protein_id AT4G32060.1p  transcript_id AT4G32060.1  
At4g32070	chr4:015504662	0.0	C/15504662-15507097	AT4G32070.1  CDS  gene_syn F10N7.120, F10N7_120  go_component vacuole|GO:0005773|15539469|IDA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein  note octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT2G25290.2); Has 4775 Blast hits to 3707 proteins in 262 species: Archae - 24; Bacteria - 195; Metazoa - 2288; Fungi - 569; Plants - 725; Viruses - 3; Other Eukaryotes - 971 (source: NCBI BLink).  protein_id AT4G32070.1p  transcript_id AT4G32070.1  protein_id AT4G32070.1p  transcript_id AT4G32070.1  
At4g32080	chr4:015508433	0.0	C/15508433-15508768	AT4G32080.1  CDS  gene_syn F10N7.110, F10N7_110  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G32080.1p  transcript_id AT4G32080.1  protein_id AT4G32080.1p  transcript_id AT4G32080.1  
At4g32080	chr4:015508883	0.0	C/15508883-15508889,15508433-15508755	AT4G32080.2  CDS  gene_syn F10N7.110, F10N7_110  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G32080.2p  transcript_id AT4G32080.2  protein_id AT4G32080.2p  transcript_id AT4G32080.2  
At4g32090	chr4:015510763	0.0	C/15510763-15510820,15509990-15510306	AT4G32090.1  CDS  gene_syn F10N7.100, F10N7_100  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process protein amino acid glycosylation|GO:0006486||IEA  go_function galactosyltransferase activity|GO:0008378||IEA  product galactosyltransferase  note galactosyltransferase; FUNCTIONS IN: galactosyltransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: galactosyltransferase (TAIR:AT4G32105.1); Has 56 Blast hits to 56 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G32090.1p  transcript_id AT4G32090.1  protein_id AT4G32090.1p  transcript_id AT4G32090.1  
At4g32100	chr4:015512158	0.0	C/15512158-15512218,15511757-15512064	AT4G32100.1  CDS  gene_syn F10N7.90, F10N7_90  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process protein amino acid glycosylation|GO:0006486||IEA  go_function galactosyltransferase activity|GO:0008378||IEA  product galactosyltransferase  note galactosyltransferase; FUNCTIONS IN: galactosyltransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: transferase, transferring glycosyl groups (TAIR:AT4G32110.1); Has 27 Blast hits to 27 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G32100.1p  transcript_id AT4G32100.1  protein_id AT4G32100.1p  transcript_id AT4G32100.1  
At4g32105	chr4:015513898	0.0	C/15513898-15513958,15513342-15513655	AT4G32105.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process protein amino acid glycosylation|GO:0006486||IEA  go_function galactosyltransferase activity|GO:0008378||IEA  product galactosyltransferase  note galactosyltransferase; FUNCTIONS IN: galactosyltransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: embryo, flower; EXPRESSED DURING: C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: transferase, transferring glycosyl groups (TAIR:AT4G32110.1); Has 28 Blast hits to 28 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G32105.1p  transcript_id AT4G32105.1  protein_id AT4G32105.1p  transcript_id AT4G32105.1  
At4g32110	chr4:015516348	0.0	C/15516348-15516408,15515769-15516082	AT4G32110.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process protein amino acid glycosylation|GO:0006486||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product transferase, transferring glycosyl groups  note transferase, transferring glycosyl groups; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: galactosyltransferase (TAIR:AT4G32105.1); Has 49 Blast hits to 49 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G32110.1p  transcript_id AT4G32110.1  protein_id AT4G32110.1p  transcript_id AT4G32110.1  
At4g32120	chr4:015519554	0.0	C/15519554-15519687,15519113-15519176,15518959-15519008,15518699-15518883,15518534-15518594,15518378-15518450,15518143-15518266,15517955-15518042,15517780-15517830,15517615-15517686,15517396-15517508,15517230-15517252	AT4G32120.1  CDS  gene_syn F10N7.70, F10N7_70  go_component membrane|GO:0016020||IEA  go_process protein amino acid glycosylation|GO:0006486||IEA  go_function galactosyltransferase activity|GO:0008378||IEA  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product galactosyltransferase family protein  note galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, galactosyltransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT2G25300.1); Has 371 Blast hits to 370 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 147; Fungi - 0; Plants - 220; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G32120.1p  transcript_id AT4G32120.1  protein_id AT4G32120.1p  transcript_id AT4G32120.1  
At4g32130	chr4:015522392	0.0	C/15522392-15522477,15522012-15522058,15521391-15521490,15521099-15521162,15520896-15521012,15520688-15520796,15520345-15520430	AT4G32130.1  CDS  gene_syn F10N7.60, F10N7_60  go_function carbohydrate binding|GO:0030246||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  product carbohydrate binding  note carbohydrate binding; FUNCTIONS IN: carbohydrate binding; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: male gametophyte, callus, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Carbohydrate-binding-like fold (InterPro:IPR013784); BEST Arabidopsis thaliana protein match is: carbohydrate binding (TAIR:AT2G25310.1); Has 213 Blast hits to 213 proteins in 94 species: Archae - 0; Bacteria - 2; Metazoa - 121; Fungi - 44; Plants - 26; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT4G32130.1p  transcript_id AT4G32130.1  protein_id AT4G32130.1p  transcript_id AT4G32130.1  
At4g32140	chr4:015525115	0.0	C/15525115-15525195,15524499-15524894,15524174-15524391,15523918-15523988,15523720-15523821,15523486-15523603,15523185-15523320,15523037-15523099	AT4G32140.1  CDS  gene_syn F10N7.50, F10N7_50  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: membrane protein (TAIR:AT3G07080.1); Has 1078 Blast hits to 1078 proteins in 273 species: Archae - 20; Bacteria - 294; Metazoa - 244; Fungi - 147; Plants - 41; Viruses - 0; Other Eukaryotes - 332 (source: NCBI BLink).  protein_id AT4G32140.1p  transcript_id AT4G32140.1  protein_id AT4G32140.1p  transcript_id AT4G32140.1  
At4g32150	chr4:015527435	0.0	C/15527435-15527651,15526982-15527172,15526699-15526862,15526407-15526494	AT4G32150.1  CDS  gene_syn ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 711, ATVAMP711, F10N7.40, F10N7_40, VAMP711, VESICLE-ASSOCIATED MEMBRANE PROTEIN 711  gene ATVAMP711  function AtVAMP711 is a member of Synaptobrevin-like AtVAMP7C, v-SNARE (soluble N-ethyl-maleimide sensitive factor attachment protein receptors) protein family. SNAREs have been divided into four subgroups: Qa-, Qb-, Qc- and R-SNAREs. R-SNAREs are classified into three groups, the Sec22-, YKT6- and VAMP7-like R-SNAREs. One R-SNARE and three Q-SNAREs (one of each subgroup) form the trans-SNARE complex, which governs specific membrane fusions. VAMP7 proteins consist of three distinct domain, the N-terminal longin-domain (LD), the SNARE motif (SNM) and a transmembrane domain. In spite of the high similarities among the VAMP7 proteins, they show different subcellular localizations. VAMP7C is vacuolar-localized and its LD is essential for the correct localization. Generally, it is suggested that the complete LD is the determinant of subcellular sorting in both animal and plant R-SNAREs.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component vacuolar membrane|GO:0005774|15876431|IDA  go_component membrane|GO:0016020||ISS  go_process membrane fusion|GO:0006944|15876431|TAS  go_process response to salt stress|GO:0009651|17101982|IMP  go_process intermembrane transport|GO:0046909|15876431|TAS  product ATVAMP711 (ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 711)  note ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 711 (ATVAMP711); INVOLVED IN: intermembrane transport, membrane fusion, response to salt stress; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: ATVAMP712 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 712) (TAIR:AT2G25340.1); Has 1801 Blast hits to 1800 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 809; Fungi - 336; Plants - 335; Viruses - 2; Other Eukaryotes - 319 (source: NCBI BLink).  protein_id AT4G32150.1p  transcript_id AT4G32150.1  protein_id AT4G32150.1p  transcript_id AT4G32150.1  
At4g32160	chr4:015529056	0.0	W/15529056-15529148,15529559-15529669,15529954-15530052,15530162-15530248,15530500-15530608,15530696-15531489,15531607-15531771,15531871-15532113,15532232-15532438,15532629-15532892	AT4G32160.1  CDS  gene_syn F10N7.30, F10N7_30  go_process signal transduction|GO:0007165|15358268|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product phox (PX) domain-containing protein  note phox (PX) domain-containing protein; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phox-like (InterPro:IPR001683); BEST Arabidopsis thaliana protein match is: phox (PX) domain-containing protein (TAIR:AT2G25350.1); Has 27288 Blast hits to 16752 proteins in 957 species: Archae - 276; Bacteria - 2134; Metazoa - 15048; Fungi - 1956; Plants - 870; Viruses - 159; Other Eukaryotes - 6845 (source: NCBI BLink).  protein_id AT4G32160.1p  transcript_id AT4G32160.1  protein_id AT4G32160.1p  transcript_id AT4G32160.1  
At4g32170	chr4:015533772	0.0	W/15533772-15535292	AT4G32170.1  CDS  gene_syn CYP96A2, F10M6.190  gene CYP96A2  function member of CYP96A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP96A2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP96A2; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, embryo, petal, sepal, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP96A11; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G39500.1); Has 20754 Blast hits to 20707 proteins in 1074 species: Archae - 19; Bacteria - 1543; Metazoa - 9542; Fungi - 4012; Plants - 4678; Viruses - 3; Other Eukaryotes - 957 (source: NCBI BLink).  protein_id AT4G32170.1p  transcript_id AT4G32170.1  protein_id AT4G32170.1p  transcript_id AT4G32170.1  
At4g32175	chr4:015535555	0.0	W/15535555-15535605,15535689-15535763,15535900-15535986,15536362-15536418,15536800-15536892,15537003-15537075,15537160-15537235,15537324-15537537	AT4G32175.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function RNA binding|GO:0003723||IEA  go_process biological_process|GO:0008150||ND  product RNA binding  note RNA binding; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S1, RNA binding (InterPro:IPR003029); BEST Arabidopsis thaliana protein match is: exonuclease-related (TAIR:AT2G25355.1); Has 380 Blast hits to 380 proteins in 172 species: Archae - 65; Bacteria - 0; Metazoa - 101; Fungi - 101; Plants - 32; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).  protein_id AT4G32175.1p  transcript_id AT4G32175.1  protein_id AT4G32175.1p  transcript_id AT4G32175.1  
At4g32180	chr4:015543460	0.0	C/15543460-15543715,15543075-15543290,15542903-15542955,15542532-15542648,15542110-15542229,15541890-15541984,15541720-15541813,15541462-15541593,15541181-15541293,15540899-15541091,15539981-15540189,15539818-15539862,15539677-15539725,15539477-15539559,15539208-15539324,15539074-15539137,15538809-15538955,15538557-15538715,15538340-15538429	AT4G32180.2  CDS  gene_syn ATPANK2, F10M6.180, F10M6_180, PANTOTHENATE KINASE 2  gene ATPANK2  function Encodes a protein with pantothenate kinase activity.  go_process coenzyme A biosynthetic process|GO:0015937||IEA  go_function pantothenate kinase activity|GO:0004594|16897480|IGI  go_function pantothenate kinase activity|GO:0004594|16897480|ISS  go_function pantothenate kinase activity|GO:0004594||ISS  product ATPANK2 (PANTOTHENATE KINASE 2); pantothenate kinase  note PANTOTHENATE KINASE 2 (ATPANK2); FUNCTIONS IN: pantothenate kinase activity; INVOLVED IN: coenzyme A biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Fumble (InterPro:IPR011602), Domain of unknown function DUF89 (InterPro:IPR002791), Pantothenate kinase, acetyl-CoA regulated, two-domain type (InterPro:IPR015844), Eukaryotic pantothenate kinase (InterPro:IPR004567); BEST Arabidopsis thaliana protein match is: ATPANK1 (PANTOTHENATE KINASE 1); pantothenate kinase (TAIR:AT1G60440.1); Has 908 Blast hits to 890 proteins in 219 species: Archae - 5; Bacteria - 142; Metazoa - 309; Fungi - 97; Plants - 91; Viruses - 0; Other Eukaryotes - 264 (source: NCBI BLink).  protein_id AT4G32180.2p  transcript_id AT4G32180.2  protein_id AT4G32180.2p  transcript_id AT4G32180.2  
At4g32180	chr4:015543460	0.0	C/15543460-15543715,15543075-15543290,15542903-15542955,15542532-15542648,15542110-15542229,15541890-15541984,15541720-15541813,15541462-15541593,15541181-15541293,15540899-15541091,15539981-15540189,15539818-15539862,15539677-15539725,15539477-15539559,15539208-15539324,15539074-15539137,15538809-15538955,15538557-15538715,15538340-15538429	AT4G32180.3  CDS  gene_syn ATPANK2, F10M6.180, F10M6_180, PANTOTHENATE KINASE 2  gene ATPANK2  function Encodes a protein with pantothenate kinase activity.  go_process coenzyme A biosynthetic process|GO:0015937||IEA  go_function pantothenate kinase activity|GO:0004594|16897480|IGI  go_function pantothenate kinase activity|GO:0004594|16897480|ISS  go_function pantothenate kinase activity|GO:0004594||ISS  product ATPANK2 (PANTOTHENATE KINASE 2); pantothenate kinase  note PANTOTHENATE KINASE 2 (ATPANK2); FUNCTIONS IN: pantothenate kinase activity; INVOLVED IN: coenzyme A biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Fumble (InterPro:IPR011602), Domain of unknown function DUF89 (InterPro:IPR002791), Pantothenate kinase, acetyl-CoA regulated, two-domain type (InterPro:IPR015844), Eukaryotic pantothenate kinase (InterPro:IPR004567); BEST Arabidopsis thaliana protein match is: ATPANK1 (PANTOTHENATE KINASE 1); pantothenate kinase (TAIR:AT1G60440.1); Has 908 Blast hits to 890 proteins in 219 species: Archae - 5; Bacteria - 142; Metazoa - 309; Fungi - 97; Plants - 91; Viruses - 0; Other Eukaryotes - 264 (source: NCBI BLink).  protein_id AT4G32180.3p  transcript_id AT4G32180.3  protein_id AT4G32180.3p  transcript_id AT4G32180.3  
At4g32180	chr4:015543460	0.0	C/15543460-15543715,15543075-15543290,15542903-15542955,15542532-15542648,15542110-15542229,15541890-15541984,15541720-15541813,15541462-15541593,15541181-15541293,15540899-15541091,15539981-15540189,15539818-15539862,15539677-15539725,15539477-15539559,15539208-15539324,15539074-15539137,15538809-15538955,15538557-15538715,15538346-15538429,15538072-15538266,15537901-15537972,15537724-15537816	AT4G32180.1  CDS  gene_syn ATPANK2, F10M6.180, F10M6_180, PANTOTHENATE KINASE 2  gene ATPANK2  function Encodes a protein with pantothenate kinase activity.  go_process coenzyme A biosynthetic process|GO:0015937||IEA  go_function pantothenate kinase activity|GO:0004594|16897480|IGI  go_function pantothenate kinase activity|GO:0004594|16897480|ISS  go_function pantothenate kinase activity|GO:0004594||ISS  product ATPANK2 (PANTOTHENATE KINASE 2); pantothenate kinase  note PANTOTHENATE KINASE 2 (ATPANK2); FUNCTIONS IN: pantothenate kinase activity; INVOLVED IN: coenzyme A biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Fumble (InterPro:IPR011602), Domain of unknown function DUF89 (InterPro:IPR002791), Pantothenate kinase, acetyl-CoA regulated, two-domain type (InterPro:IPR015844), Eukaryotic pantothenate kinase (InterPro:IPR004567); BEST Arabidopsis thaliana protein match is: ATPANK1 (PANTOTHENATE KINASE 1); pantothenate kinase (TAIR:AT1G60440.1); Has 918 Blast hits to 900 proteins in 223 species: Archae - 10; Bacteria - 145; Metazoa - 310; Fungi - 97; Plants - 91; Viruses - 0; Other Eukaryotes - 265 (source: NCBI BLink).  protein_id AT4G32180.1p  transcript_id AT4G32180.1  protein_id AT4G32180.1p  transcript_id AT4G32180.1  
At4g32190	chr4:015545052	0.0	W/15545052-15545114,15545401-15547689	AT4G32190.1  CDS  gene_syn F10M6.170, F10M6_170  product centromeric protein-related  note centromeric protein-related; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27595.1); Has 175667 Blast hits to 79884 proteins in 2342 species: Archae - 1846; Bacteria - 27476; Metazoa - 82690; Fungi - 12086; Plants - 6517; Viruses - 595; Other Eukaryotes - 44457 (source: NCBI BLink).  protein_id AT4G32190.1p  transcript_id AT4G32190.1  protein_id AT4G32190.1p  transcript_id AT4G32190.1  
At4g32200	chr4:015548840	0.0	W/15548840-15548884,15549068-15549164,15549235-15549396,15549491-15549626,15549746-15549914,15550020-15550151,15550244-15550424,15550474-15550586,15550673-15551126,15551233-15551322,15551532-15551652,15552271-15552388,15552430-15553258,15553336-15554162,15554237-15554962	AT4G32200.1  CDS  gene_syn ASY2, F10M6.160, F10M6_160  gene ASY2  function meiotic asynaptic mutant 2, homologue of ASY1  go_component endomembrane system|GO:0012505||IEA  go_process synaptonemal complex assembly|GO:0007130|10855496|TAS  go_function DNA binding|GO:0003677||ISS  product ASY2; DNA binding  note ASY2; FUNCTIONS IN: DNA binding; INVOLVED IN: synaptonemal complex assembly; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: DNA-binding HORMA (InterPro:IPR003511); BEST Arabidopsis thaliana protein match is: ASY1 (ASYNAPTIC 1); DNA binding (TAIR:AT1G67370.1); Has 706 Blast hits to 640 proteins in 196 species: Archae - 10; Bacteria - 88; Metazoa - 174; Fungi - 92; Plants - 122; Viruses - 14; Other Eukaryotes - 206 (source: NCBI BLink).  protein_id AT4G32200.1p  transcript_id AT4G32200.1  protein_id AT4G32200.1p  transcript_id AT4G32200.1  
At4g32205	chr4:015555495	0.0	W/15555495-15556159	AT4G32205.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT3G10100.1)  
At4g32210	chr4:015557967	0.0	C/15557967-15558041,15557416-15557492,15557254-15557326,15556732-15557148	AT4G32210.1  CDS  gene_syn F10M6.150, F10M6_150, SDH3-2  gene SDH3-2  function Encodes one of the membrane anchor subunits of the mitochondrial respiratory complex II. The protein is encoded by the nuclear genome but is imported into the mitochondrion. There are two genes that encode this protein, the other is SDH3-1.  go_component mitochondrion|GO:0005739|12374303|IDA  go_component mitochondrial respiratory chain complex II|GO:0005749|12374303|ISS  go_component membrane|GO:0016020|12374303|ISS  go_process mitochondrial electron transport, succinate to ubiquinone|GO:0006121|12374303|TAS  go_function succinate dehydrogenase activity|GO:0000104|12374303|TAS  product SDH3-2; succinate dehydrogenase  note SDH3-2; FUNCTIONS IN: succinate dehydrogenase activity; INVOLVED IN: mitochondrial electron transport, succinate to ubiquinone; LOCATED IN: mitochondrial respiratory chain complex II, mitochondrion, membrane; EXPRESSED IN: stem, male gametophyte, flower, inflorescence, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase, cytochrome b subunit (InterPro:IPR000701); BEST Arabidopsis thaliana protein match is: SDH3-1; succinate dehydrogenase (TAIR:AT5G09600.1); Has 306 Blast hits to 306 proteins in 89 species: Archae - 0; Bacteria - 35; Metazoa - 42; Fungi - 35; Plants - 67; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).  protein_id AT4G32210.1p  transcript_id AT4G32210.1  protein_id AT4G32210.1p  transcript_id AT4G32210.1  
At4g32208	chr4:015559545	0.0	C/15559545-15559650,15558753-15559108	AT4G32208.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: MTHSC70-2 (MITOCHONDRIAL HSP70 2); ATP binding (TAIR:AT5G09590.1); Has 5503 Blast hits to 5502 proteins in 1651 species: Archae - 75; Bacteria - 3077; Metazoa - 59; Fungi - 47; Plants - 148; Viruses - 0; Other Eukaryotes - 2097 (source: NCBI BLink).  protein_id AT4G32208.1p  transcript_id AT4G32208.1  protein_id AT4G32208.1p  transcript_id AT4G32208.1  
At4g32212	chr4:015559920	0.0	C/15559920-15562070	AT4G32212.1  pseudogenic_transcript  pseudo  function unknown pseudogene  
At4g32215	chr4:015562591	0.0	W/15562591-15562848	AT4G32215.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 9.1e-09 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays)  
At4g32220	chr4:015563308	0.0	C/15563308-15565000	AT4G32220.1  mRNA_TE_gene  pseudo  gene_syn F10M6.140, F10M6_140  note Transposable element gene, gypsy-like retrotransposon family, has a 4.8e-57 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At4g32230	chr4:015566857	0.0	C/15566857-15566971,15566343-15566525,15566152-15566246,15565619-15565740,15565295-15565448	AT4G32230.1  CDS  gene_syn F10M6.130, F10M6_130  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; Has 11 Blast hits to 11 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G32230.1p  transcript_id AT4G32230.1  protein_id AT4G32230.1p  transcript_id AT4G32230.1  
At4g32240	chr4:015568570	0.0	W/15568570-15568675,15568787-15568836,15568921-15569016	AT4G32240.1  CDS  gene_syn F10M6.120, F10M6_120  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G32240.1p  transcript_id AT4G32240.1  protein_id AT4G32240.1p  transcript_id AT4G32240.1  
At4g32250	chr4:015572181	0.0	C/15572181-15572528,15572009-15572100,15571431-15571904,15570285-15571206	AT4G32250.1  CDS  gene_syn F10M6.110, F10M6_110  go_component chloroplast|GO:0009507|18431481|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: KEG (KEEP ON GOING); protein binding / protein kinase/ ubiquitin-protein ligase (TAIR:AT5G13530.1); Has 51165 Blast hits to 50929 proteins in 2385 species: Archae - 40; Bacteria - 5097; Metazoa - 24000; Fungi - 4193; Plants - 8569; Viruses - 165; Other Eukaryotes - 9101 (source: NCBI BLink).  protein_id AT4G32250.1p  transcript_id AT4G32250.1  protein_id AT4G32250.1p  transcript_id AT4G32250.1  
At4g32250	chr4:015572181	0.0	C/15572181-15572528,15572009-15572100,15571431-15571904,15570285-15571206	AT4G32250.2  CDS  gene_syn F10M6.110, F10M6_110  go_component chloroplast|GO:0009507|18431481|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: KEG (KEEP ON GOING); protein binding / protein kinase/ ubiquitin-protein ligase (TAIR:AT5G13530.1); Has 51165 Blast hits to 50929 proteins in 2385 species: Archae - 40; Bacteria - 5097; Metazoa - 24000; Fungi - 4193; Plants - 8569; Viruses - 165; Other Eukaryotes - 9101 (source: NCBI BLink).  protein_id AT4G32250.2p  transcript_id AT4G32250.2  protein_id AT4G32250.2p  transcript_id AT4G32250.2  
At4g32250	chr4:015572181	0.0	C/15572181-15572528,15572009-15572100,15571431-15571904,15570285-15571206	AT4G32250.3  CDS  gene_syn F10M6.110, F10M6_110  go_component chloroplast|GO:0009507|18431481|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: KEG (KEEP ON GOING); protein binding / protein kinase/ ubiquitin-protein ligase (TAIR:AT5G13530.1); Has 51165 Blast hits to 50929 proteins in 2385 species: Archae - 40; Bacteria - 5097; Metazoa - 24000; Fungi - 4193; Plants - 8569; Viruses - 165; Other Eukaryotes - 9101 (source: NCBI BLink).  protein_id AT4G32250.3p  transcript_id AT4G32250.3  protein_id AT4G32250.3p  transcript_id AT4G32250.3  
At4g32260	chr4:015574092	0.0	C/15574092-15574586,15573859-15574023	AT4G32260.1  CDS  gene_syn F10M6.100, F10M6_100  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_function hydrogen ion transmembrane transporter activity|GO:0015078||IEA  product ATP synthase family  note ATP synthase family; FUNCTIONS IN: hydrogen ion transmembrane transporter activity; INVOLVED IN: defense response to bacterium; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F0 complex, subunit B/B&apos;, bacterial and chloroplast (InterPro:IPR002146); Has 1542 Blast hits to 1530 proteins in 464 species: Archae - 6; Bacteria - 819; Metazoa - 9; Fungi - 5; Plants - 48; Viruses - 1; Other Eukaryotes - 654 (source: NCBI BLink).  protein_id AT4G32260.1p  transcript_id AT4G32260.1  protein_id AT4G32260.1p  transcript_id AT4G32260.1  
At4g32270	chr4:015576210	0.0	C/15576210-15576264,15575902-15575992,15575680-15575779,15575371-15575465,15575015-15575288	AT4G32270.2  CDS  gene_syn F10M6.90, F10M6_90  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25340.1); Has 57 Blast hits to 55 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G32270.2p  transcript_id AT4G32270.2  protein_id AT4G32270.2p  transcript_id AT4G32270.2  
At4g32270	chr4:015576210	0.0	C/15576210-15576360,15575902-15576001,15575680-15575779,15575371-15575465,15575015-15575288	AT4G32270.1  CDS  gene_syn F10M6.90, F10M6_90  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25340.1); Has 99 Blast hits to 97 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 56; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G32270.1p  transcript_id AT4G32270.1  protein_id AT4G32270.1p  transcript_id AT4G32270.1  
At4g32265	chr4:015576650	0.0	W/15576650-15576722	AT4G32265.1  tRNA  gene_syn 67189.TRNA-ARG-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: TCT)  transcript_id AT4G32265.1  
At4g32272	chr4:015579539	0.0	C/15579539-15579689,15579034-15579110,15578759-15578917,15578524-15578657,15578033-15578163,15577890-15577934,15577712-15577809,15577518-15577625,15577368-15577424,15577195-15577269	AT4G32272.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter-related (TAIR:AT4G31600.1); Has 1302 Blast hits to 1300 proteins in 174 species: Archae - 0; Bacteria - 4; Metazoa - 376; Fungi - 239; Plants - 567; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT4G32272.1p  transcript_id AT4G32272.1  protein_id AT4G32272.1p  transcript_id AT4G32272.1  
At4g32280	chr4:015583479	0.0	W/15583479-15583738,15583923-15584251,15584357-15584447,15584553-15584628	AT4G32280.1  CDS  gene_syn F10M6.1, IAA29, INDOLE-3-ACETIC ACID INDUCIBLE 29  gene IAA29  function Auxin inducible protein.  go_component nucleus|GO:0005634||IEA  go_process response to auxin stimulus|GO:0009733|12036262|TAS  go_process response to red light|GO:0010114|17076805|IEP  go_process response to far red light|GO:0010218|17076805|IEP  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  product IAA29 (INDOLE-3-ACETIC ACID INDUCIBLE 29); transcription factor  note INDOLE-3-ACETIC ACID INDUCIBLE 29 (IAA29); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to cyclopentenone, response to auxin stimulus, response to red light, response to far red light; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA31 (INDOLE-3-ACETIC ACID INDUCIBLE 31); transcription factor (TAIR:AT3G17600.1); Has 906 Blast hits to 904 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 903; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G32280.1p  transcript_id AT4G32280.1  protein_id AT4G32280.1p  transcript_id AT4G32280.1  
At4g32285	chr4:015586003	0.0	W/15586003-15587910	AT4G32285.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process clathrin coat assembly|GO:0048268||IEA  go_function phospholipid binding|GO:0005543||IEA  go_function phosphatidylinositol binding|GO:0005545||IEA  go_function clathrin binding|GO:0030276||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_function binding|GO:0005488||ISS  product epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related  note epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related; FUNCTIONS IN: phospholipid binding, clathrin binding, binding, phosphatidylinositol binding; INVOLVED IN: clathrin coat assembly; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942), Clathrin adaptor, phosphoinositide-binding, GAT-like (InterPro:IPR014712); BEST Arabidopsis thaliana protein match is: epsin N-terminal homology (ENTH) domain-containing protein (TAIR:AT2G25430.1); Has 1251 Blast hits to 1096 proteins in 211 species: Archae - 8; Bacteria - 172; Metazoa - 457; Fungi - 134; Plants - 334; Viruses - 22; Other Eukaryotes - 124 (source: NCBI BLink).  protein_id AT4G32285.1p  transcript_id AT4G32285.1  protein_id AT4G32285.1p  transcript_id AT4G32285.1  
At4g32285	chr4:015586003	0.0	W/15586003-15587910	AT4G32285.2  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process clathrin coat assembly|GO:0048268||IEA  go_function phospholipid binding|GO:0005543||IEA  go_function phosphatidylinositol binding|GO:0005545||IEA  go_function clathrin binding|GO:0030276||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_function binding|GO:0005488||ISS  product epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related  note epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related; FUNCTIONS IN: phospholipid binding, clathrin binding, binding, phosphatidylinositol binding; INVOLVED IN: clathrin coat assembly; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942), Clathrin adaptor, phosphoinositide-binding, GAT-like (InterPro:IPR014712); BEST Arabidopsis thaliana protein match is: epsin N-terminal homology (ENTH) domain-containing protein (TAIR:AT2G25430.1); Has 1251 Blast hits to 1096 proteins in 211 species: Archae - 8; Bacteria - 172; Metazoa - 457; Fungi - 134; Plants - 334; Viruses - 22; Other Eukaryotes - 124 (source: NCBI BLink).  protein_id AT4G32285.2p  transcript_id AT4G32285.2  protein_id AT4G32285.2p  transcript_id AT4G32285.2  
At4g32290	chr4:015589839	0.0	C/15589839-15590993	AT4G32290.1  CDS  gene_syn F10M6.70, F10M6_70  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF266, plant (InterPro:IPR004949); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25330.1); Has 323 Blast hits to 323 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 304; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT4G32290.1p  transcript_id AT4G32290.1  protein_id AT4G32290.1p  transcript_id AT4G32290.1  
At4g32295	chr4:015592960	0.0	W/15592960-15593060,15593168-15593282,15593501-15593615,15593695-15594080	AT4G32295.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24150.1); Has 10 Blast hits to 10 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G32295.1p  transcript_id AT4G32295.1  protein_id AT4G32295.1p  transcript_id AT4G32295.1  
At4g32295	chr4:015593259	0.0	W/15593259-15593282,15593501-15593615,15593695-15594080	AT4G32295.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24150.1); Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G32295.2p  transcript_id AT4G32295.2  protein_id AT4G32295.2p  transcript_id AT4G32295.2  
At4g32300	chr4:015599970	0.0	W/15599970-15602435	AT4G32300.1  CDS  gene_syn F10M6.60, F10M6_60, S-DOMAIN-2 5, SD2-5  gene SD2-5  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid autophosphorylation|GO:0046777|18552232|IDA  go_function protein kinase activity|GO:0004672|18552232|IDA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product SD2-5 (S-DOMAIN-2 5); carbohydrate binding / kinase/ protein kinase  note S-DOMAIN-2 5 (SD2-5); FUNCTIONS IN: carbohydrate binding, protein kinase activity, kinase activity; INVOLVED IN: protein amino acid autophosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding (TAIR:AT5G35370.1); Has 86237 Blast hits to 85082 proteins in 3060 species: Archae - 46; Bacteria - 7202; Metazoa - 37588; Fungi - 6750; Plants - 19563; Viruses - 369; Other Eukaryotes - 14719 (source: NCBI BLink).  protein_id AT4G32300.1p  transcript_id AT4G32300.1  protein_id AT4G32300.1p  transcript_id AT4G32300.1  
At4g32320	chr4:015602777	0.0	W/15602777-15602960,15603049-15603151,15603260-15603375,15603897-15603967,15604126-15604168,15604255-15604351,15604445-15604528,15604608-15604729,15604870-15604936,15605132-15605234	AT4G32320.1  CDS  gene_syn APX6, F10M6.50, F10M6_50  gene APX6  function Encodes a cytosolic ascorbate peroxidase APX6. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function heme binding|GO:0020037||IEA  go_component cytosol|GO:0005829|12068123|TAS  go_function L-ascorbate peroxidase activity|GO:0016688||ISS  product APX6; L-ascorbate peroxidase/ heme binding / peroxidase  note APX6; FUNCTIONS IN: L-ascorbate peroxidase activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: APX2 (ASCORBATE PEROXIDASE 2); L-ascorbate peroxidase (TAIR:AT3G09640.2); Has 5766 Blast hits to 5749 proteins in 867 species: Archae - 34; Bacteria - 1578; Metazoa - 0; Fungi - 616; Plants - 2663; Viruses - 0; Other Eukaryotes - 875 (source: NCBI BLink).  protein_id AT4G32320.1p  transcript_id AT4G32320.1  protein_id AT4G32320.1p  transcript_id AT4G32320.1  
At4g32330	chr4:015609801	0.0	W/15609801-15610001,15610086-15610331,15610444-15610484,15610668-15610739,15610857-15610956,15611039-15611110,15611195-15611305,15611397-15611867	AT4G32330.1  CDS  gene_syn F8B4.30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Targeting for Xklp2 (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25480.1); Has 4728 Blast hits to 3313 proteins in 331 species: Archae - 4; Bacteria - 347; Metazoa - 2216; Fungi - 461; Plants - 233; Viruses - 22; Other Eukaryotes - 1445 (source: NCBI BLink).  protein_id AT4G32330.1p  transcript_id AT4G32330.1  protein_id AT4G32330.1p  transcript_id AT4G32330.1  
At4g32330	chr4:015609801	0.0	W/15609801-15610001,15610086-15610331,15610444-15610484,15610668-15610739,15610857-15610956,15611039-15611110,15611195-15611305,15611397-15611867	AT4G32330.3  CDS  gene_syn F8B4.30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Targeting for Xklp2 (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25480.1); Has 4728 Blast hits to 3313 proteins in 331 species: Archae - 4; Bacteria - 347; Metazoa - 2216; Fungi - 461; Plants - 233; Viruses - 22; Other Eukaryotes - 1445 (source: NCBI BLink).  protein_id AT4G32330.3p  transcript_id AT4G32330.3  protein_id AT4G32330.3p  transcript_id AT4G32330.3  
At4g32330	chr4:015609801	0.0	W/15609801-15610001,15610086-15610331,15610444-15610484,15610668-15610739,15610860-15610956,15611039-15611110,15611195-15611305,15611397-15611867	AT4G32330.2  CDS  gene_syn F8B4.30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Targeting for Xklp2 (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25480.1); Has 4582 Blast hits to 3307 proteins in 347 species: Archae - 4; Bacteria - 425; Metazoa - 2127; Fungi - 421; Plants - 244; Viruses - 22; Other Eukaryotes - 1339 (source: NCBI BLink).  protein_id AT4G32330.2p  transcript_id AT4G32330.2  protein_id AT4G32330.2p  transcript_id AT4G32330.2  
At4g32340	chr4:015613809	0.0	C/15613809-15614219,15613285-15613460,15612741-15612870	AT4G32340.1  CDS  gene_syn F8B4.40  product unknown protein  note EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: binding (TAIR:AT1G80130.1); Has 2680 Blast hits to 1282 proteins in 184 species: Archae - 2; Bacteria - 433; Metazoa - 1247; Fungi - 71; Plants - 657; Viruses - 13; Other Eukaryotes - 257 (source: NCBI BLink).  protein_id AT4G32340.1p  transcript_id AT4G32340.1  protein_id AT4G32340.1p  transcript_id AT4G32340.1  
At4g32342	chr4:015616162	0.0	C/15616162-15616200,15615825-15616065,15615593-15615677,15615413-15615479,15615184-15615237	AT4G32342.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25360.1); Has 72 Blast hits to 72 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G32342.1p  transcript_id AT4G32342.1  protein_id AT4G32342.1p  transcript_id AT4G32342.1  
At4g32350	chr4:015617634	0.0	W/15617634-15617674,15617778-15617910,15617998-15618101,15618539-15618683,15618776-15618919,15619011-15620642	AT4G32350.1  CDS  gene_syn F8B4.50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79910.1); Has 2466 Blast hits to 1931 proteins in 180 species: Archae - 0; Bacteria - 43; Metazoa - 915; Fungi - 124; Plants - 233; Viruses - 5; Other Eukaryotes - 1146 (source: NCBI BLink).  protein_id AT4G32350.1p  transcript_id AT4G32350.1  protein_id AT4G32350.1p  transcript_id AT4G32350.1  
At4g32360	chr4:015621550	0.0	W/15621550-15621666,15621779-15621883,15621971-15622084,15622203-15622256,15622383-15622499,15622644-15622753,15622855-15622928,15623444-15623505,15623621-15623822,15623946-15624006,15624105-15624172,15624272-15624417,15624490-15624711	AT4G32360.1  CDS  gene_syn F8B4.60  go_component plasma membrane|GO:0005886|14506206|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function electron carrier activity|GO:0009055||ISS  product NADP adrenodoxin-like ferredoxin reductase  note NADP adrenodoxin-like ferredoxin reductase; FUNCTIONS IN: electron carrier activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Adrenodoxin reductase (InterPro:IPR000759), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: GLT1; glutamate synthase (NADH) (TAIR:AT5G53460.1); Has 5902 Blast hits to 5892 proteins in 1133 species: Archae - 91; Bacteria - 3487; Metazoa - 194; Fungi - 173; Plants - 55; Viruses - 0; Other Eukaryotes - 1902 (source: NCBI BLink).  protein_id AT4G32360.1p  transcript_id AT4G32360.1  protein_id AT4G32360.1p  transcript_id AT4G32360.1  
At4g32370	chr4:015625558	0.0	W/15625558-15625713,15625807-15625947,15626198-15626368,15626566-15626773,15626875-15626965,15627171-15627282,15627368-15627517	AT4G32370.1  CDS  gene_syn F8B4.70, F8B4_70  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT4G32375.1); Has 2313 Blast hits to 2302 proteins in 291 species: Archae - 2; Bacteria - 398; Metazoa - 8; Fungi - 977; Plants - 859; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT4G32370.1p  transcript_id AT4G32370.1  protein_id AT4G32370.1p  transcript_id AT4G32370.1  
At4g32375	chr4:015628873	0.0	W/15628873-15628884,15629249-15629392,15629529-15629699,15629791-15629998,15630116-15630197,15630481-15630595,15630710-15630826,15630985-15631596	AT4G32375.1  CDS  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_component cellular_component|GO:0005575||ND  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT4G32380.1); Has 30752 Blast hits to 14529 proteins in 1179 species: Archae - 134; Bacteria - 5719; Metazoa - 8473; Fungi - 3224; Plants - 7177; Viruses - 1316; Other Eukaryotes - 4709 (source: NCBI BLink).  protein_id AT4G32375.1p  transcript_id AT4G32375.1  protein_id AT4G32375.1p  transcript_id AT4G32375.1  
At4g32378	chr4:015633112	0.0	C/15633112-15633222	AT4G32378.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G32378.1p  transcript_id AT4G32378.1  protein_id AT4G32378.1p  transcript_id AT4G32378.1  
At4g32380	chr4:015633641	0.0	W/15633641-15633784,15633959-15634166,15634279-15634360,15634437-15634545,15634644-15634766,15635022-15635420	AT4G32380.1  CDS  gene_syn F8B4.80, F8B4_80  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_component cellular_component|GO:0005575||ND  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT4G32375.1); Has 2449 Blast hits to 2442 proteins in 309 species: Archae - 2; Bacteria - 486; Metazoa - 8; Fungi - 1001; Plants - 870; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT4G32380.1p  transcript_id AT4G32380.1  protein_id AT4G32380.1p  transcript_id AT4G32380.1  
At4g32390	chr4:015636550	0.0	W/15636550-15637602	AT4G32390.1  CDS  gene_syn F8B4.90, F8B4_90  go_component endomembrane system|GO:0012505||IEA  go_function organic anion transmembrane transporter activity|GO:0008514||ISS  product phosphate translocator-related  note phosphate translocator-related; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: phosphate translocator-related (TAIR:AT2G25520.1); Has 1575 Blast hits to 1573 proteins in 180 species: Archae - 0; Bacteria - 6; Metazoa - 425; Fungi - 287; Plants - 687; Viruses - 0; Other Eukaryotes - 170 (source: NCBI BLink).  protein_id AT4G32390.1p  transcript_id AT4G32390.1  protein_id AT4G32390.1p  transcript_id AT4G32390.1  
At4g32400	chr4:015638686	0.0	W/15638686-15639228,15639418-15639579,15639765-15640238	AT4G32400.1  CDS  gene_syn ARABIDOPSIS THALIANA BRITTLE 1, ATBT1, F8B4.100, F8B4_100, SHS1, SODIUM HYPERSENSITIVE 1  gene SHS1  function Encodes a plastidial nucleotide uniport carrier protein required to export newly synthesized adenylates into the cytosol.  go_component chloroplast|GO:0009507|18431481|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_component plastid|GO:0009536|16618929|IDA  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_process nucleotide transport|GO:0006862|18564385|IGI  go_function transporter activity|GO:0005215||ISS  go_function binding|GO:0005488||ISS  go_function nucleotide transmembrane transporter activity|GO:0015215|18564385|IGI  product SHS1 (SODIUM HYPERSENSITIVE 1); binding / nucleotide transmembrane transporter/ transporter  note SODIUM HYPERSENSITIVE 1 (SHS1); FUNCTIONS IN: nucleotide transmembrane transporter activity, transporter activity, binding; INVOLVED IN: transport, nucleotide transport, mitochondrial transport; LOCATED IN: mitochondrion, mitochondrial inner membrane, chloroplast, plastid; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: mitochondrial substrate carrier family protein (TAIR:AT3G20240.1); Has 21543 Blast hits to 10199 proteins in 363 species: Archae - 0; Bacteria - 0; Metazoa - 11049; Fungi - 5604; Plants - 2788; Viruses - 6; Other Eukaryotes - 2096 (source: NCBI BLink).  protein_id AT4G32400.1p  transcript_id AT4G32400.1  protein_id AT4G32400.1p  transcript_id AT4G32400.1  
At4g32410	chr4:015646308	0.0	C/15646308-15646388,15645585-15645780,15645314-15645486,15644976-15645090,15644671-15644860,15644237-15644503,15643556-15643901,15643340-15643477,15643133-15643258,15642769-15642981,15642398-15642662,15642114-15642310,15641679-15642029,15641009-15641596	AT4G32410.1  CDS  gene_syn CELLULOSE SYNTHASE 1, CESA1, F8B4.110, F8B4_110, RADIALLY SWOLLEN 1, RSW1  gene CESA1  function Encodes a cellulose synthase isomer. CESA1 mutants have cellulose defect in the primary cell wall. Multiple lines of evidence suggest that CESA1, along with CESA3 and CESA6 are present in the same plasma membrane complex for cellulose biosynthesis. lasma membrane complex for cellulose biosynthesis.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process plant-type cell wall biogenesis|GO:0009832|10938350|TAS  go_process primary cell wall biogenesis|GO:0009833|12068120|IMP  go_process cellulose biosynthetic process|GO:0030244|10938350|TAS  go_process cellulose biosynthetic process|GO:0030244|12068120|IMP  go_process hyperosmotic salinity response|GO:0042538|18408158|IMP  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  product CESA1 (CELLULOSE SYNTHASE 1); cellulose synthase/ transferase, transferring glycosyl groups  note CELLULOSE SYNTHASE 1 (CESA1); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: primary cell wall biogenesis, hyperosmotic salinity response, plant-type cell wall biogenesis, cellulose biosynthetic process; LOCATED IN: Golgi apparatus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: CESA10 (CELLULOSE SYNTHASE 10); cellulose synthase/ transferase, transferring glycosyl groups (TAIR:AT2G25540.1); Has 2182 Blast hits to 1874 proteins in 416 species: Archae - 8; Bacteria - 810; Metazoa - 2; Fungi - 11; Plants - 1293; Viruses - 3; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT4G32410.1p  transcript_id AT4G32410.1  protein_id AT4G32410.1p  transcript_id AT4G32410.1  
At4g32420	chr4:015650605	0.0	C/15650605-15650678,15650387-15650514,15650002-15650317,15649690-15649799,15649232-15649406,15648134-15649141,15647979-15648047,15647550-15647853	AT4G32420.2  CDS  gene_syn F8B4.120, F8B4_120  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||IEA  go_process protein folding|GO:0006457||ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein  note peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein (TAIR:AT3G63400.2); Has 17080 Blast hits to 12939 proteins in 731 species: Archae - 2; Bacteria - 859; Metazoa - 10016; Fungi - 1793; Plants - 1208; Viruses - 206; Other Eukaryotes - 2996 (source: NCBI BLink).  protein_id AT4G32420.2p  transcript_id AT4G32420.2  protein_id AT4G32420.2p  transcript_id AT4G32420.2  
At4g32420	chr4:015652026	0.0	C/15652026-15652103,15651880-15651934,15651685-15651773,15651351-15651375,15650986-15651024,15650605-15650722,15650387-15650514,15650002-15650317,15649690-15649799,15649232-15649406,15648134-15649141,15647979-15648047,15647550-15647853	AT4G32420.1  CDS  gene_syn F8B4.120, F8B4_120  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||IEA  go_process protein folding|GO:0006457||ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein  note peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein (TAIR:AT3G63400.2); Has 74855 Blast hits to 37824 proteins in 1737 species: Archae - 81; Bacteria - 8063; Metazoa - 39594; Fungi - 7744; Plants - 4192; Viruses - 920; Other Eukaryotes - 14261 (source: NCBI BLink).  protein_id AT4G32420.1p  transcript_id AT4G32420.1  protein_id AT4G32420.1p  transcript_id AT4G32420.1  
At4g32430	chr4:015652982	0.0	W/15652982-15655273	AT4G32430.1  CDS  gene_syn F8B4.130, F8B4_130  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G27610.1); Has 15450 Blast hits to 4869 proteins in 156 species: Archae - 1; Bacteria - 10; Metazoa - 62; Fungi - 63; Plants - 14980; Viruses - 0; Other Eukaryotes - 334 (source: NCBI BLink).  protein_id AT4G32430.1p  transcript_id AT4G32430.1  protein_id AT4G32430.1p  transcript_id AT4G32430.1  
At4g32440	chr4:015657295	0.0	W/15657295-15657693,15657958-15658647,15659262-15659354	AT4G32440.2  CDS  gene_syn F8B4.140, F8B4_140  go_function RNA binding|GO:0003723||IEA  go_process biological_process|GO:0008150||ND  product agenet domain-containing protein  note agenet domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ENT (InterPro:IPR005491), Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein (TAIR:AT2G25590.1); Has 104 Blast hits to 95 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G32440.2p  transcript_id AT4G32440.2  protein_id AT4G32440.2p  transcript_id AT4G32440.2  
At4g32440	chr4:015657295	0.0	W/15657295-15657693,15657958-15658692	AT4G32440.1  CDS  gene_syn F8B4.140, F8B4_140  go_function RNA binding|GO:0003723||IEA  go_process biological_process|GO:0008150||ND  product agenet domain-containing protein  note agenet domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ENT (InterPro:IPR005491), Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein (TAIR:AT2G25590.1); Has 105 Blast hits to 95 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G32440.1p  transcript_id AT4G32440.1  protein_id AT4G32440.1p  transcript_id AT4G32440.1  
At4g32445	chr4:015660370	0.0	W/15660370-15660475	AT4G32445.1  miRNA  gene_syn MICRORNA419, MIR419  gene MIR419  function Encodes a microRNA. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence:TTATGAATGCTGAGGATGTTG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR419 (MICRORNA419); miRNA  transcript_id AT4G32445.1  
At4g32450	chr4:015661092	0.0	W/15661092-15662705	AT4G32450.1  CDS  gene_syn F8B4.150, F8B4_150  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25580.1); Has 8519 Blast hits to 3907 proteins in 96 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 35; Plants - 8361; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).  protein_id AT4G32450.1p  transcript_id AT4G32450.1  protein_id AT4G32450.1p  transcript_id AT4G32450.1  
At4g32460	chr4:015664787	0.0	C/15664787-15664859,15663674-15664171,15663036-15663562	AT4G32460.1  CDS  gene_syn F8B4.160, F8B4_160  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11420.1); Has 182 Blast hits to 158 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 180; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G32460.1p  transcript_id AT4G32460.1  protein_id AT4G32460.1p  transcript_id AT4G32460.1  
At4g32460	chr4:015664787	0.0	C/15664787-15664859,15663674-15664171,15663036-15663562	AT4G32460.2  CDS  gene_syn F8B4.160, F8B4_160  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11420.1); Has 182 Blast hits to 158 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 180; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G32460.2p  transcript_id AT4G32460.2  protein_id AT4G32460.2p  transcript_id AT4G32460.2  
At4g32470	chr4:015671002	0.0	C/15671002-15671095,15670733-15670890,15670071-15670118,15669641-15669709	AT4G32470.1  CDS  go_component mitochondrion|GO:0005739|15276431|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process mitochondrial electron transport, ubiquinol to cytochrome c|GO:0006122||IEA  go_function ubiquinol-cytochrome-c reductase activity|GO:0008121||IEA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component mitochondrial respiratory chain complex III|GO:0005750|18189341|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process mitochondrial electron transport, ubiquinol to cytochrome c|GO:0006122||ISS  go_function ubiquinol-cytochrome-c reductase activity|GO:0008121||ISS  product ubiquinol-cytochrome C reductase complex 14 kDa protein, putative  note ubiquinol-cytochrome C reductase complex 14 kDa protein, putative; FUNCTIONS IN: ubiquinol-cytochrome-c reductase activity; INVOLVED IN: mitochondrial electron transport, ubiquinol to cytochrome c; LOCATED IN: mitochondrion, plasma membrane, plastid, mitochondrial respiratory chain complex III, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome bd ubiquinol oxidase, 14 kDa subunit (InterPro:IPR003197); BEST Arabidopsis thaliana protein match is: ubiquinol-cytochrome C reductase complex 14 kDa protein, putative (TAIR:AT5G25450.1); Has 264 Blast hits to 264 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 167; Fungi - 41; Plants - 51; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G32470.1p  transcript_id AT4G32470.1  protein_id AT4G32470.1p  transcript_id AT4G32470.1  
At4g32470	chr4:015671002	0.0	C/15671002-15671095,15670733-15670890,15670071-15670118,15670020-15670020,15669705-15669709	AT4G32470.2  CDS  go_component mitochondrion|GO:0005739|15276431|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process mitochondrial electron transport, ubiquinol to cytochrome c|GO:0006122||IEA  go_function ubiquinol-cytochrome-c reductase activity|GO:0008121||IEA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component mitochondrial respiratory chain complex III|GO:0005750|18189341|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process mitochondrial electron transport, ubiquinol to cytochrome c|GO:0006122||ISS  go_function ubiquinol-cytochrome-c reductase activity|GO:0008121||ISS  product ubiquinol-cytochrome C reductase complex 14 kDa protein, putative  note ubiquinol-cytochrome C reductase complex 14 kDa protein, putative; FUNCTIONS IN: ubiquinol-cytochrome-c reductase activity; INVOLVED IN: mitochondrial electron transport, ubiquinol to cytochrome c; LOCATED IN: mitochondrion, plasma membrane, plastid, mitochondrial respiratory chain complex III, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome bd ubiquinol oxidase, 14 kDa subunit (InterPro:IPR003197); BEST Arabidopsis thaliana protein match is: ubiquinol-cytochrome C reductase complex 14 kDa protein, putative (TAIR:AT5G25450.1); Has 219 Blast hits to 219 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 162; Fungi - 3; Plants - 51; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G32470.2p  transcript_id AT4G32470.2  protein_id AT4G32470.2p  transcript_id AT4G32470.2  
At4g32475	chr4:015671393	0.0	W/15671393-15671463	AT4G32475.1  tRNA  gene_syn 67190.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: GCC)  transcript_id AT4G32475.1  
At4g32480	chr4:015676488	0.0	W/15676488-15676700,15676805-15677030,15677352-15677776	AT4G32480.1  CDS  gene_syn F8B4.180, F8B4_180  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20670.1); Has 203 Blast hits to 203 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 201; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G32480.1p  transcript_id AT4G32480.1  protein_id AT4G32480.1p  transcript_id AT4G32480.1  
At4g32490	chr4:015679370	0.0	C/15679370-15679556,15678811-15679289	AT4G32490.1  CDS  gene_syn F8B4.190, F8B4_190  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function copper ion binding|GO:0005507||ISS  product plastocyanin-like domain-containing protein  note plastocyanin-like domain-containing protein; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to membrane; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: plastocyanin-like domain-containing protein (TAIR:AT4G28365.1); Has 2151 Blast hits to 1298 proteins in 186 species: Archae - 4; Bacteria - 433; Metazoa - 153; Fungi - 152; Plants - 825; Viruses - 202; Other Eukaryotes - 382 (source: NCBI BLink).  protein_id AT4G32490.1p  transcript_id AT4G32490.1  protein_id AT4G32490.1p  transcript_id AT4G32490.1  
At4g32500	chr4:015681122	0.0	W/15681122-15681357,15681822-15682187,15682300-15682357,15682442-15682759,15682917-15683162,15683237-15683335,15683422-15683454,15683522-15683707,15683808-15684002,15684113-15684188,15684277-15684843,15684952-15685214	AT4G32500.1  CDS  gene_syn AKT5, F8B4.200, F8B4_200  gene AKT5  function member of Stelar K+ outward rectifying channel (SKOR) family  go_component membrane|GO:0016020||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process ion transport|GO:0006811||IEA  go_process potassium ion transport|GO:0006813||IEA  go_function inward rectifier potassium channel activity|GO:0005242||ISS  go_function cyclic nucleotide binding|GO:0030551||ISS  product AKT5; cyclic nucleotide binding / inward rectifier potassium channel  note AKT5; FUNCTIONS IN: cyclic nucleotide binding, inward rectifier potassium channel activity; INVOLVED IN: potassium ion transport, N-terminal protein myristoylation, ion transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Cyclic nucleotide-binding, conserved site (InterPro:IPR018488), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: SPIK (Shaker Pollen Inward K+ channel); cyclic nucleotide binding / inward rectifier potassium channel/ potassium channel (TAIR:AT2G25600.1); Has 66084 Blast hits to 26679 proteins in 1018 species: Archae - 67; Bacteria - 4983; Metazoa - 34447; Fungi - 4847; Plants - 2028; Viruses - 1019; Other Eukaryotes - 18693 (source: NCBI BLink).  protein_id AT4G32500.1p  transcript_id AT4G32500.1  protein_id AT4G32500.1p  transcript_id AT4G32500.1  
At4g32510	chr4:015688681	0.0	C/15688681-15688811,15688534-15688626,15688258-15688443,15688004-15688163,15687772-15687937,15687523-15687689,15687259-15687432,15687072-15687167,15686878-15686994,15686452-15686777,15685927-15686359,15685822-15685851	AT4G32510.1  CDS  gene_syn L23H3.1  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process anion transport|GO:0006820||IEA  go_function anion exchanger activity|GO:0015380||ISS  product anion exchanger  note anion exchanger; FUNCTIONS IN: anion exchanger activity; INVOLVED IN: anion transport; LOCATED IN: integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, C-terminal (InterPro:IPR011531), Bicarbonate transporter, eukaryotic (InterPro:IPR003020); BEST Arabidopsis thaliana protein match is: anion exchanger (TAIR:AT5G25430.1); Has 1865 Blast hits to 1066 proteins in 140 species: Archae - 0; Bacteria - 4; Metazoa - 1544; Fungi - 173; Plants - 100; Viruses - 1; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT4G32510.1p  transcript_id AT4G32510.1  protein_id AT4G32510.1p  transcript_id AT4G32510.1  
At4g32520	chr4:015692118	0.0	C/15692118-15692334,15691809-15692004,15691546-15691720,15691344-15691461,15691152-15691264,15690917-15691039,15690715-15690819,15690542-15690628,15690341-15690448,15690161-15690233,15689642-15689916	AT4G32520.1  CDS  gene_syn L23H3.3, SERINE HYDROXYMETHYLTRANSFERASE 3, SHM3  gene SHM3  go_component chloroplast|GO:0009507|18431481|IDA  go_process glycine metabolic process|GO:0006544||IEA  go_process L-serine metabolic process|GO:0006563||IEA  go_function catalytic activity|GO:0003824||IEA  go_function glycine hydroxymethyltransferase activity|GO:0004372||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_process glycine metabolic process|GO:0006544||ISS  go_process L-serine metabolic process|GO:0006563||ISS  go_function glycine hydroxymethyltransferase activity|GO:0004372||ISS  product SHM3 (SERINE HYDROXYMETHYLTRANSFERASE 3); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding  note SERINE HYDROXYMETHYLTRANSFERASE 3 (SHM3); FUNCTIONS IN: pyridoxal phosphate binding, glycine hydroxymethyltransferase activity, catalytic activity; INVOLVED IN: glycine metabolic process, L-serine metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Glycine hydroxymethyltransferase (InterPro:IPR001085); BEST Arabidopsis thaliana protein match is: SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1); glycine hydroxymethyltransferase/ poly(U) binding (TAIR:AT4G37930.1); Has 8367 Blast hits to 8354 proteins in 1625 species: Archae - 143; Bacteria - 3516; Metazoa - 292; Fungi - 187; Plants - 212; Viruses - 6; Other Eukaryotes - 4011 (source: NCBI BLink).  protein_id AT4G32520.1p  transcript_id AT4G32520.1  protein_id AT4G32520.1p  transcript_id AT4G32520.1  
At4g32520	chr4:015692118	0.0	C/15692118-15692334,15691809-15692004,15691546-15691720,15691344-15691461,15691152-15691264,15690917-15691039,15690715-15690819,15690542-15690628,15690341-15690448,15690161-15690233,15689642-15689916	AT4G32520.2  CDS  gene_syn L23H3.3, SERINE HYDROXYMETHYLTRANSFERASE 3, SHM3  gene SHM3  go_component chloroplast|GO:0009507|18431481|IDA  go_process glycine metabolic process|GO:0006544||IEA  go_process L-serine metabolic process|GO:0006563||IEA  go_function catalytic activity|GO:0003824||IEA  go_function glycine hydroxymethyltransferase activity|GO:0004372||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_process glycine metabolic process|GO:0006544||ISS  go_process L-serine metabolic process|GO:0006563||ISS  go_function glycine hydroxymethyltransferase activity|GO:0004372||ISS  product SHM3 (SERINE HYDROXYMETHYLTRANSFERASE 3); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding  note SERINE HYDROXYMETHYLTRANSFERASE 3 (SHM3); FUNCTIONS IN: pyridoxal phosphate binding, glycine hydroxymethyltransferase activity, catalytic activity; INVOLVED IN: glycine metabolic process, L-serine metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Glycine hydroxymethyltransferase (InterPro:IPR001085); BEST Arabidopsis thaliana protein match is: SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1); glycine hydroxymethyltransferase/ poly(U) binding (TAIR:AT4G37930.1); Has 8367 Blast hits to 8354 proteins in 1625 species: Archae - 143; Bacteria - 3516; Metazoa - 292; Fungi - 187; Plants - 212; Viruses - 6; Other Eukaryotes - 4011 (source: NCBI BLink).  protein_id AT4G32520.2p  transcript_id AT4G32520.2  protein_id AT4G32520.2p  transcript_id AT4G32520.2  
At4g32530	chr4:015694831	0.0	C/15694831-15694958,15694669-15694746,15693399-15693825	AT4G32530.2  CDS  gene_syn L23H3.10, L23H3_10  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_function ATPase activity|GO:0016887||ISS  product vacuolar ATP synthase, putative / V-ATPase, putative  note vacuolar ATP synthase, putative / V-ATPase, putative; FUNCTIONS IN: ATPase activity; INVOLVED IN: ATP synthesis coupled proton transport; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F0/V0 complex, subunit C (InterPro:IPR002379), ATPase, V0 complex, proteolipid subunit C (InterPro:IPR000245); BEST Arabidopsis thaliana protein match is: H+-transporting two-sector ATPase, C subunit family protein (TAIR:AT2G25610.1); Has 1484 Blast hits to 1216 proteins in 252 species: Archae - 35; Bacteria - 40; Metazoa - 641; Fungi - 317; Plants - 220; Viruses - 0; Other Eukaryotes - 231 (source: NCBI BLink).  protein_id AT4G32530.2p  transcript_id AT4G32530.2  protein_id AT4G32530.2p  transcript_id AT4G32530.2  
At4g32530	chr4:015694831	0.0	C/15694831-15694958,15694669-15694746,15693655-15693825,15693399-15693564	AT4G32530.1  CDS  gene_syn L23H3.10, L23H3_10  go_component vacuole|GO:0005773|15215502|IDA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_function ATPase activity|GO:0016887||ISS  product vacuolar ATP synthase, putative / V-ATPase, putative  note vacuolar ATP synthase, putative / V-ATPase, putative; FUNCTIONS IN: ATPase activity; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F0/V0 complex, subunit C (InterPro:IPR002379), ATPase, V0 complex, proteolipid subunit C (InterPro:IPR000245); BEST Arabidopsis thaliana protein match is: H+-transporting two-sector ATPase, C subunit family protein (TAIR:AT2G25610.1); Has 1602 Blast hits to 1309 proteins in 285 species: Archae - 72; Bacteria - 90; Metazoa - 650; Fungi - 324; Plants - 224; Viruses - 0; Other Eukaryotes - 242 (source: NCBI BLink).  protein_id AT4G32530.1p  transcript_id AT4G32530.1  protein_id AT4G32530.1p  transcript_id AT4G32530.1  
At4g32540	chr4:015700904	0.0	W/15700904-15701548,15701646-15701894,15702425-15702547,15702643-15702870	AT4G32540.1  CDS  gene_syn L23H3.20, L23H3_20, YUC, YUC1, YUCCA, YUCCA 1  gene YUC1  function Mutant has elevated levels of free IAA in dominant mutant allele; Flavin Monooxygenase-Like Enzyme; Auxin Biosynthesis  go_function flavin-containing monooxygenase activity|GO:0004499||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_process anatomical structure morphogenesis|GO:0009653|17704214|IGI  go_process auxin biosynthetic process|GO:0009851|11209081|IMP  go_process auxin biosynthetic process|GO:0009851|16818609|IMP  go_process positive regulation of flower development|GO:0009911|18000043|IGI  go_process inflorescence development|GO:0010229|18000043|IGI  go_process leaf development|GO:0048366|17704214|IGI  go_process cotyledon development|GO:0048825|18000043|IGI  go_process phyllome development|GO:0048827|18000043|IGI  product YUC1 (YUCCA 1); FAD binding / NADP or NADPH binding / flavin-containing monooxygenase/ oxidoreductase  note YUCCA 1 (YUC1); FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: in 7 processes; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: F mature embryo stage, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960), Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027); BEST Arabidopsis thaliana protein match is: YUC4 (YUCCA4); monooxygenase/ oxidoreductase (TAIR:AT5G11320.1); Has 6810 Blast hits to 6797 proteins in 780 species: Archae - 19; Bacteria - 2928; Metazoa - 679; Fungi - 937; Plants - 353; Viruses - 0; Other Eukaryotes - 1894 (source: NCBI BLink).  protein_id AT4G32540.1p  transcript_id AT4G32540.1  protein_id AT4G32540.1p  transcript_id AT4G32540.1  
At4g32551	chr4:015707863	0.0	W/15707863-15707894,15708640-15708737,15708853-15708962,15709258-15709743,15709841-15709926,15710067-15710145,15710237-15710312,15710427-15710476,15710569-15710877,15711066-15711287,15711407-15711652,15711741-15711858,15711965-15712074,15712150-15712299,15712403-15712558,15712655-15712771,15712908-15713114,15713216-15713359	AT4G32551.1  CDS  gene_syn L23H3.30, L23H3_30, LEUNIG, LUG, RON2, ROTUNDA 2  gene LUG  function LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors.  go_component nucleus|GO:0005634|11058164|IDA  go_process flower development|GO:0009908|7743940|IMP  go_process negative regulation of transcription|GO:0016481|11782418|IGI  go_function protein binding|GO:0005515||NAS  go_function transcription repressor activity|GO:0016564|11058164|ISS  go_function protein heterodimerization activity|GO:0046982|16679456|IPI  product LUG (LEUNIG); protein binding / protein heterodimerization/ transcription repressor  note LEUNIG (LUG); FUNCTIONS IN: protein binding, transcription repressor activity, protein heterodimerization activity; INVOLVED IN: flower development, negative regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif, subgroup (InterPro:IPR013720), WD40 repeat (InterPro:IPR001680), WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), Single-stranded DNA-binding protein, SSDP (InterPro:IPR007591), WD40/YVTN repeat-like (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein (TAIR:AT2G32700.6); Has 146086 Blast hits to 56763 proteins in 1578 species: Archae - 80; Bacteria - 11739; Metazoa - 60211; Fungi - 19618; Plants - 10931; Viruses - 801; Other Eukaryotes - 42706 (source: NCBI BLink).  protein_id AT4G32551.1p  transcript_id AT4G32551.1  protein_id AT4G32551.1p  transcript_id AT4G32551.1  
At4g32560	chr4:015713866	0.0	W/15713866-15713892,15714020-15714124,15714234-15714347,15714423-15714602,15714726-15714805,15715106-15715145,15715256-15715363,15715577-15715657,15715766-15715888,15715973-15716035	AT4G32560.1  CDS  gene_syn L23H3.40, L23H3_40  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product paramyosin-related  note paramyosin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 1629 Blast hits to 1518 proteins in 216 species: Archae - 30; Bacteria - 95; Metazoa - 1023; Fungi - 60; Plants - 25; Viruses - 2; Other Eukaryotes - 394 (source: NCBI BLink).  protein_id AT4G32560.1p  transcript_id AT4G32560.1  protein_id AT4G32560.1p  transcript_id AT4G32560.1  
At4g32560	chr4:015713866	0.0	W/15713866-15713892,15714020-15714124,15714234-15714347,15714423-15714602,15714726-15714805,15715106-15715145,15715256-15715363,15715577-15715657,15715766-15715888,15715973-15716035	AT4G32560.2  CDS  gene_syn L23H3.40, L23H3_40  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product paramyosin-related  note paramyosin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 1629 Blast hits to 1518 proteins in 216 species: Archae - 30; Bacteria - 95; Metazoa - 1023; Fungi - 60; Plants - 25; Viruses - 2; Other Eukaryotes - 394 (source: NCBI BLink).  protein_id AT4G32560.2p  transcript_id AT4G32560.2  protein_id AT4G32560.2p  transcript_id AT4G32560.2  
At4g32560	chr4:015713866	0.0	W/15713866-15713892,15714020-15714124,15714240-15714347,15714423-15714602,15714726-15714805,15715106-15715145,15715256-15715363,15715577-15715657,15715766-15715888,15715973-15716035	AT4G32560.3  CDS  gene_syn L23H3.40, L23H3_40  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product paramyosin-related  note paramyosin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 1204 Blast hits to 1114 proteins in 179 species: Archae - 29; Bacteria - 67; Metazoa - 809; Fungi - 58; Plants - 24; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).  protein_id AT4G32560.3p  transcript_id AT4G32560.3  protein_id AT4G32560.3p  transcript_id AT4G32560.3  
At4g32570	chr4:015718456	0.0	C/15718456-15718702,15717593-15717762,15717244-15717500,15717069-15717165,15716731-15716956,15716433-15716521	AT4G32570.1  CDS  gene_syn F4D11.230, F4D11_230, TIFY DOMAIN PROTEIN 8, TIFY8  gene TIFY8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product TIFY8 (TIFY DOMAIN PROTEIN 8)  note TIFY DOMAIN PROTEIN 8 (TIFY8); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399); Has 46 Blast hits to 46 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G32570.1p  transcript_id AT4G32570.1  protein_id AT4G32570.1p  transcript_id AT4G32570.1  
At4g32580	chr4:015720365	0.0	C/15720365-15720535,15720216-15720290,15719878-15720114	AT4G32580.1  CDS  gene_syn F4D11.220, F4D11_220  go_process cell redox homeostasis|GO:0045454||IEA  go_component cellular_component|GO:0005575||ND  product thioredoxin family protein  note thioredoxin family protein; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336), Glutaredoxin-related protein (InterPro:IPR004480); BEST Arabidopsis thaliana protein match is: thioredoxin family protein (TAIR:AT4G04950.1); Has 6895 Blast hits to 6883 proteins in 1433 species: Archae - 89; Bacteria - 3369; Metazoa - 724; Fungi - 467; Plants - 625; Viruses - 3; Other Eukaryotes - 1618 (source: NCBI BLink).  protein_id AT4G32580.1p  transcript_id AT4G32580.1  protein_id AT4G32580.1p  transcript_id AT4G32580.1  
At4g32590	chr4:015721417	0.0	W/15721417-15721608,15721694-15721807,15722016-15722069,15722238-15722300,15722546-15722608,15722725-15722781	AT4G32590.3  CDS  gene_syn F4D11.210, F4D11_210  go_component chloroplast|GO:0009507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function iron-sulfur cluster binding|GO:0051536||IEA  go_function electron carrier activity|GO:0009055||ISS  product ferredoxin-related  note ferredoxin-related; FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: NDF4 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1); electron carrier/ iron-sulfur cluster binding (TAIR:AT3G16250.1); Has 619 Blast hits to 619 proteins in 113 species: Archae - 0; Bacteria - 282; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 301 (source: NCBI BLink).  protein_id AT4G32590.3p  transcript_id AT4G32590.3  protein_id AT4G32590.3p  transcript_id AT4G32590.3  
At4g32590	chr4:015721417	0.0	W/15721417-15721608,15721694-15721807,15722016-15722069,15722238-15722300,15722546-15722608,15722741-15722776	AT4G32590.1  CDS  gene_syn F4D11.210, F4D11_210  go_component chloroplast|GO:0009507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function iron-sulfur cluster binding|GO:0051536||IEA  go_function electron carrier activity|GO:0009055||ISS  product ferredoxin-related  note ferredoxin-related; FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: NDF4 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1); electron carrier/ iron-sulfur cluster binding (TAIR:AT3G16250.1); Has 645 Blast hits to 645 proteins in 120 species: Archae - 0; Bacteria - 292; Metazoa - 0; Fungi - 3; Plants - 37; Viruses - 0; Other Eukaryotes - 313 (source: NCBI BLink).  protein_id AT4G32590.1p  transcript_id AT4G32590.1  protein_id AT4G32590.1p  transcript_id AT4G32590.1  
At4g32590	chr4:015721417	0.0	W/15721417-15721608,15721694-15721807,15722016-15722069,15722238-15722304,15722546-15722608,15722741-15722781	AT4G32590.4  CDS  gene_syn F4D11.210, F4D11_210  go_component chloroplast|GO:0009507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function iron-sulfur cluster binding|GO:0051536||IEA  go_function electron carrier activity|GO:0009055||ISS  product ferredoxin-related  note ferredoxin-related; FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041); BEST Arabidopsis thaliana protein match is: NDF4 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1); electron carrier/ iron-sulfur cluster binding (TAIR:AT3G16250.1); Has 169 Blast hits to 169 proteins in 56 species: Archae - 0; Bacteria - 98; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT4G32590.4p  transcript_id AT4G32590.4  protein_id AT4G32590.4p  transcript_id AT4G32590.4  
At4g32590	chr4:015721417	0.0	W/15721417-15721608,15721694-15721807,15722016-15722073,15722238-15722266	AT4G32590.2  CDS  gene_syn F4D11.210, F4D11_210  go_component chloroplast|GO:0009507||IEA  go_function electron carrier activity|GO:0009055||ISS  product ferredoxin-related  note ferredoxin-related; FUNCTIONS IN: electron carrier activity; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 15 growth stages; Has 86 Blast hits to 86 proteins in 36 species: Archae - 0; Bacteria - 49; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G32590.2p  transcript_id AT4G32590.2  protein_id AT4G32590.2p  transcript_id AT4G32590.2  
At4g32600	chr4:015724010	0.0	W/15724010-15724677,15724874-15724999,15725093-15725381,15725459-15725737	AT4G32600.1  CDS  gene_syn F4D11.200, F4D11_200  go_component plasma membrane|GO:0005886|17317660|IDA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G80400.1); Has 7180 Blast hits to 7160 proteins in 223 species: Archae - 0; Bacteria - 6; Metazoa - 2398; Fungi - 545; Plants - 2870; Viruses - 33; Other Eukaryotes - 1328 (source: NCBI BLink).  protein_id AT4G32600.1p  transcript_id AT4G32600.1  protein_id AT4G32600.1p  transcript_id AT4G32600.1  
At4g32605	chr4:015727691	0.0	C/15727691-15727864,15727204-15727529,15726429-15726612	AT4G32605.1  CDS  go_component mitochondrion|GO:0005739|18385124|IDA  product unknown protein  note LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial glycoprotein (InterPro:IPR003428); BEST Arabidopsis thaliana protein match is: mitochondrial glycoprotein family protein / MAM33 family protein (TAIR:AT3G55605.1); Has 195 Blast hits to 195 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 64; Plants - 99; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT4G32605.1p  transcript_id AT4G32605.1  protein_id AT4G32605.1p  transcript_id AT4G32605.1  
At4g32610	chr4:015729577	0.0	C/15729577-15729897,15728911-15729175,15728376-15728737	AT4G32610.1  CDS  gene_syn F4D11.190, F4D11_190  go_component mitochondrial matrix|GO:0005759||ISS  product unknown protein  note unknown protein; LOCATED IN: mitochondrial matrix; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25670.2); Has 47502 Blast hits to 27315 proteins in 1430 species: Archae - 78; Bacteria - 5619; Metazoa - 19417; Fungi - 5653; Plants - 1695; Viruses - 355; Other Eukaryotes - 14685 (source: NCBI BLink).  protein_id AT4G32610.1p  transcript_id AT4G32610.1  protein_id AT4G32610.1p  transcript_id AT4G32610.1  
At4g32620	chr4:015731968	0.0	W/15731968-15734238,15734345-15735913,15736341-15736596,15736696-15737222	AT4G32620.2  CDS  gene_syn F4D11.180, F4D11_180  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor (InterPro:IPR002999); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04670.1).  protein_id AT4G32620.2p  transcript_id AT4G32620.2  protein_id AT4G32620.2p  transcript_id AT4G32620.2  
At4g32620	chr4:015731968	0.0	W/15731968-15734238,15734345-15735913,15736341-15736596,15736699-15737222	AT4G32620.1  CDS  gene_syn F4D11.180, F4D11_180  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor (InterPro:IPR002999); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04670.1); Has 415 Blast hits to 372 proteins in 77 species: Archae - 0; Bacteria - 16; Metazoa - 88; Fungi - 41; Plants - 133; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).  protein_id AT4G32620.1p  transcript_id AT4G32620.1  protein_id AT4G32620.1p  transcript_id AT4G32620.1  
At4g32630	chr4:015738315	0.0	W/15738315-15738401,15738502-15738563,15738698-15738785,15738862-15738923,15739015-15739102,15739226-15739639,15739720-15740139,15740351-15740473,15740553-15740648,15740716-15740805,15740901-15741078,15741156-15741204,15741283-15741412	AT4G32630.2  CDS  gene_syn F4D11.170, F4D11_170  go_process regulation of ARF GTPase activity|GO:0032312||IEA  go_function ARF GTPase activator activity|GO:0008060||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product ARF GTPase activator/ zinc ion binding  note ARF GTPase activator/ zinc ion binding; FUNCTIONS IN: ARF GTPase activator activity, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: NIG (NSP (NUCLEAR SHUTTLE PROTEIN)-INTERACTING GTPASE); GTP binding / GTPase (TAIR:AT4G13350.2); Has 2154 Blast hits to 2130 proteins in 167 species: Archae - 0; Bacteria - 4; Metazoa - 1217; Fungi - 323; Plants - 264; Viruses - 0; Other Eukaryotes - 346 (source: NCBI BLink).  protein_id AT4G32630.2p  transcript_id AT4G32630.2  protein_id AT4G32630.2p  transcript_id AT4G32630.2  
At4g32630	chr4:015738315	0.0	W/15738315-15738401,15738502-15738563,15738698-15738785,15738862-15738923,15739015-15739102,15739226-15739639,15739720-15740139,15740351-15740473,15740553-15740648,15740719-15740805,15740901-15741078,15741156-15741204,15741283-15741412	AT4G32630.1  CDS  gene_syn F4D11.170, F4D11_170  go_process regulation of ARF GTPase activity|GO:0032312||IEA  go_function ARF GTPase activator activity|GO:0008060||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product ARF GTPase activator/ zinc ion binding  note ARF GTPase activator/ zinc ion binding; FUNCTIONS IN: ARF GTPase activator activity, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: NIG (NSP (NUCLEAR SHUTTLE PROTEIN)-INTERACTING GTPASE); GTP binding / GTPase (TAIR:AT4G13350.2); Has 2159 Blast hits to 2133 proteins in 169 species: Archae - 0; Bacteria - 10; Metazoa - 1218; Fungi - 321; Plants - 262; Viruses - 0; Other Eukaryotes - 348 (source: NCBI BLink).  protein_id AT4G32630.1p  transcript_id AT4G32630.1  protein_id AT4G32630.1p  transcript_id AT4G32630.1  
At4g32640	chr4:015742661	0.0	W/15742661-15743515,15743838-15744062,15744180-15744254,15744367-15744465,15744620-15744731,15745043-15745170,15745496-15745615,15746008-15746088,15746186-15746263,15746422-15746514,15746864-15746918,15747087-15747163,15747250-15747321,15747451-15747534,15747641-15747760,15747857-15747925,15748250-15748291,15748386-15748524,15748606-15748770,15749250-15749395,15749488-15749667,15749872-15749960,15750059-15750090,15750318-15750424	AT4G32640.1  CDS  gene_syn F4D11.160, F4D11_160  go_component COPII vesicle coat|GO:0030127||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process ER to Golgi vesicle-mediated transport|GO:0006888||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular protein transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24 helical region (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24 trunk region (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin region (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: CEF (clone eighty-four); protein binding / transporter/ zinc ion binding (TAIR:AT3G44340.1); Has 78573 Blast hits to 39320 proteins in 1269 species: Archae - 50; Bacteria - 9353; Metazoa - 41001; Fungi - 10869; Plants - 6189; Viruses - 1516; Other Eukaryotes - 9595 (source: NCBI BLink).  protein_id AT4G32640.1p  transcript_id AT4G32640.1  protein_id AT4G32640.1p  transcript_id AT4G32640.1  
At4g32640	chr4:015742661	0.0	W/15742661-15743515,15743838-15744062,15744180-15744254,15744367-15744465,15744620-15744731,15745043-15745170,15745496-15745615,15746008-15746088,15746186-15746263,15746422-15746514,15746864-15746918,15747087-15747163,15747250-15747321,15747451-15747534,15747641-15747760,15747857-15747925,15748250-15748291,15748386-15748524,15748606-15748770,15749250-15749395,15749488-15749667,15749872-15749960,15750059-15750090,15750318-15750424	AT4G32640.2  CDS  gene_syn F4D11.160, F4D11_160  go_component COPII vesicle coat|GO:0030127||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process ER to Golgi vesicle-mediated transport|GO:0006888||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular protein transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24 helical region (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24 trunk region (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin region (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: CEF (clone eighty-four); protein binding / transporter/ zinc ion binding (TAIR:AT3G44340.1); Has 78573 Blast hits to 39320 proteins in 1269 species: Archae - 50; Bacteria - 9353; Metazoa - 41001; Fungi - 10869; Plants - 6189; Viruses - 1516; Other Eukaryotes - 9595 (source: NCBI BLink).  protein_id AT4G32640.2p  transcript_id AT4G32640.2  protein_id AT4G32640.2p  transcript_id AT4G32640.2  
At4g32650	chr4:015754538	0.0	C/15754538-15754797,15754096-15754311,15753841-15754002,15753675-15753732,15753255-15753572,15752923-15753162,15752739-15752837,15752562-15752594,15752276-15752464,15752104-15752187,15751934-15752012,15751528-15751583	AT4G32650.2  CDS  gene_syn ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, ATKC1, F4D11.150, F4D11_150, K+ INWARD RECTIFYING CHANNEL PROTEIN, KAT3, POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 3  gene ATKC1  function A member of the Shaker family of voltage-gated potassium channel subunits. Does not form functional potassium channel on its own. Involved in down-regulating AKT1 and KAT1 channel activity by forming heteromers with AKT1 or KAT1.  go_component endoplasmic reticulum|GO:0005783|17976154|IDA  go_component plasma membrane|GO:0005886|17976154|IDA  go_component plasma membrane|GO:0005886||ISS  go_process response to nematode|GO:0009624|16478044|IEP  go_function inward rectifier potassium channel activity|GO:0005242||ISS  go_function cyclic nucleotide binding|GO:0030551||ISS  product ATKC1 (ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1); cyclic nucleotide binding / inward rectifier potassium channel  note ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1 (ATKC1); FUNCTIONS IN: cyclic nucleotide binding, inward rectifier potassium channel activity; INVOLVED IN: response to nematode; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: shoot apex, stem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: AKT1 (ARABIDOPSIS K TRANSPORTER 1); cyclic nucleotide binding / inward rectifier potassium channel (TAIR:AT2G26650.1); Has 4743 Blast hits to 4588 proteins in 455 species: Archae - 17; Bacteria - 660; Metazoa - 1667; Fungi - 69; Plants - 474; Viruses - 0; Other Eukaryotes - 1856 (source: NCBI BLink).  protein_id AT4G32650.2p  transcript_id AT4G32650.2  protein_id AT4G32650.2p  transcript_id AT4G32650.2  
At4g32650	chr4:015754538	0.0	C/15754538-15754797,15754096-15754311,15753841-15754002,15753675-15753732,15753255-15753572,15752923-15753162,15752739-15752837,15752562-15752594,15752276-15752464,15752104-15752187,15751934-15752012,15751690-15751833,15751482-15751585	AT4G32650.3  CDS  gene_syn ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, ATKC1, F4D11.150, F4D11_150, K+ INWARD RECTIFYING CHANNEL PROTEIN, KAT3, POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 3  gene ATKC1  function A member of the Shaker family of voltage-gated potassium channel subunits. Does not form functional potassium channel on its own. Involved in down-regulating AKT1 and KAT1 channel activity by forming heteromers with AKT1 or KAT1.  go_component endoplasmic reticulum|GO:0005783|17976154|IDA  go_component plasma membrane|GO:0005886|17976154|IDA  go_component plasma membrane|GO:0005886||ISS  go_process response to nematode|GO:0009624|16478044|IEP  go_function inward rectifier potassium channel activity|GO:0005242||ISS  go_function cyclic nucleotide binding|GO:0030551||ISS  product ATKC1 (ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1); cyclic nucleotide binding / inward rectifier potassium channel  note ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1 (ATKC1); FUNCTIONS IN: cyclic nucleotide binding, inward rectifier potassium channel activity; INVOLVED IN: response to nematode; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: shoot apex, stem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: KAT2 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 2); cyclic nucleotide binding / inward rectifier potassium channel (TAIR:AT4G18290.1); Has 4779 Blast hits to 4583 proteins in 451 species: Archae - 17; Bacteria - 658; Metazoa - 1669; Fungi - 60; Plants - 517; Viruses - 0; Other Eukaryotes - 1858 (source: NCBI BLink).  protein_id AT4G32650.3p  transcript_id AT4G32650.3  protein_id AT4G32650.3p  transcript_id AT4G32650.3  
At4g32650	chr4:015754538	0.0	C/15754538-15754797,15754096-15754311,15753841-15754002,15753675-15753732,15753255-15753572,15752923-15753162,15752739-15752837,15752562-15752594,15752276-15752464,15752104-15752187,15751934-15752012,15751690-15751836,15751482-15751585	AT4G32650.1  CDS  gene_syn ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, ATKC1, F4D11.150, F4D11_150, K+ INWARD RECTIFYING CHANNEL PROTEIN, KAT3, POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 3  gene ATKC1  function A member of the Shaker family of voltage-gated potassium channel subunits. Does not form functional potassium channel on its own. Involved in down-regulating AKT1 and KAT1 channel activity by forming heteromers with AKT1 or KAT1.  go_component endoplasmic reticulum|GO:0005783|17976154|IDA  go_component plasma membrane|GO:0005886|17976154|IDA  go_component plasma membrane|GO:0005886||ISS  go_process response to nematode|GO:0009624|16478044|IEP  go_function inward rectifier potassium channel activity|GO:0005242||ISS  go_function cyclic nucleotide binding|GO:0030551||ISS  product ATKC1 (ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1); cyclic nucleotide binding / inward rectifier potassium channel  note ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1 (ATKC1); FUNCTIONS IN: cyclic nucleotide binding, inward rectifier potassium channel activity; INVOLVED IN: response to nematode; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: shoot apex, stem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: KAT1 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 1); cyclic nucleotide binding / inward rectifier potassium channel (TAIR:AT5G46240.1); Has 5082 Blast hits to 4886 proteins in 591 species: Archae - 17; Bacteria - 956; Metazoa - 1670; Fungi - 61; Plants - 515; Viruses - 0; Other Eukaryotes - 1863 (source: NCBI BLink).  protein_id AT4G32650.1p  transcript_id AT4G32650.1  protein_id AT4G32650.1p  transcript_id AT4G32650.1  
At4g32660	chr4:015756396	0.0	W/15756396-15756485,15756643-15756763,15756993-15757019,15757112-15757265,15757362-15757410,15757684-15757798,15757934-15758025,15758155-15758302,15758415-15758479,15758573-15758670,15758770-15758875,15758970-15759107	AT4G32660.1  CDS  gene_syn AME3, F4D11.140, F4D11_140  gene AME3  function Encodes protein kinase AME3.  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product AME3; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note AME3; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT3G53570.4); Has 61381 Blast hits to 60292 proteins in 1509 species: Archae - 37; Bacteria - 4109; Metazoa - 28152; Fungi - 7734; Plants - 7274; Viruses - 289; Other Eukaryotes - 13786 (source: NCBI BLink).  protein_id AT4G32660.1p  transcript_id AT4G32660.1  protein_id AT4G32660.1p  transcript_id AT4G32660.1  
At4g32660	chr4:015756396	0.0	W/15756396-15756485,15756643-15756763,15756993-15757019,15757112-15757265,15757362-15757410,15757684-15757798,15757934-15758025,15758155-15758302,15758415-15758479,15758573-15758670,15758770-15758881	AT4G32660.2  CDS  gene_syn AME3, F4D11.140, F4D11_140  gene AME3  function Encodes protein kinase AME3.  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product AME3; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note AME3; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT3G53570.4); Has 60973 Blast hits to 59914 proteins in 1507 species: Archae - 37; Bacteria - 4105; Metazoa - 28065; Fungi - 7610; Plants - 7237; Viruses - 274; Other Eukaryotes - 13645 (source: NCBI BLink).  protein_id AT4G32660.2p  transcript_id AT4G32660.2  protein_id AT4G32660.2p  transcript_id AT4G32660.2  
At4g32660	chr4:015756420	0.0	W/15756420-15756485,15756643-15756763,15756993-15757019,15757112-15757265,15757362-15757410,15757684-15757798,15757934-15758025,15758155-15758302,15758415-15758479,15758573-15758670,15758770-15758875,15758970-15759107	AT4G32660.3  CDS  gene_syn AME3, F4D11.140, F4D11_140  gene AME3  function Encodes protein kinase AME3.  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product AME3; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note AME3; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT3G53570.4); Has 61419 Blast hits to 60327 proteins in 1508 species: Archae - 37; Bacteria - 4111; Metazoa - 28170; Fungi - 7743; Plants - 7269; Viruses - 287; Other Eukaryotes - 13802 (source: NCBI BLink).  protein_id AT4G32660.3p  transcript_id AT4G32660.3  protein_id AT4G32660.3p  transcript_id AT4G32660.3  
At4g32670	chr4:015762617	0.0	C/15762617-15762847,15761899-15762474,15761316-15761762,15761054-15761241,15760661-15760972,15760436-15760587,15760206-15760357,15759980-15760126,15759527-15759904	AT4G32670.1  CDS  gene_syn F4D11.130, F4D11_130  go_function zinc ion binding|GO:0008270||IEA  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G34100.2); Has 1590 Blast hits to 1445 proteins in 164 species: Archae - 0; Bacteria - 2; Metazoa - 845; Fungi - 134; Plants - 283; Viruses - 44; Other Eukaryotes - 282 (source: NCBI BLink).  protein_id AT4G32670.1p  transcript_id AT4G32670.1  protein_id AT4G32670.1p  transcript_id AT4G32670.1  
At4g32680	chr4:015764829	0.0	C/15764829-15765039,15763462-15764099	AT4G32680.1  CDS  gene_syn F4D11.120, F4D11_120  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G32680.1p  transcript_id AT4G32680.1  protein_id AT4G32680.1p  transcript_id AT4G32680.1  
At4g32690	chr4:015765486	0.0	W/15765486-15765622,15765976-15766106,15766465-15766609,15766748-15766862	AT4G32690.1  CDS  gene_syn F4D11.1, GLB3  gene GLB3  function Encodes a hemoglobin (Hb) with a central domain similar to the  truncated Hbs of bacteria, protozoa and fungi. The 3D structure of these types of Hbs is a 2-on-2 arrangement of alpha-helices as opposed to the 3-on-3 arrangement of the standard globin fold. This type of Hb is not found in animals or yeast.  go_component cellular_component|GO:0005575||ND  go_process response to hypoxia|GO:0001666|11526234|IEP  go_process response to auxin stimulus|GO:0009733|11526234|TAS  go_process oxygen transport|GO:0015671|11526234|IDA  go_function oxygen transporter activity|GO:0005344|11526234|IDA  product GLB3; oxygen transporter  note GLB3; FUNCTIONS IN: oxygen transporter activity; INVOLVED IN: oxygen transport, response to auxin stimulus, response to hypoxia; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Globin, truncated bacterial-like (InterPro:IPR001486), Globin-like (InterPro:IPR009050), Globin (InterPro:IPR012292); Has 719 Blast hits to 719 proteins in 308 species: Archae - 0; Bacteria - 583; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).  protein_id AT4G32690.1p  transcript_id AT4G32690.1  protein_id AT4G32690.1p  transcript_id AT4G32690.1  
At4g32700	chr4:015767440	0.0	W/15767440-15767475,15767999-15768426,15768567-15768798,15768892-15769752,15770304-15770368,15770517-15770622,15770705-15770905,15771070-15771270,15771593-15771754,15771832-15772071,15772229-15772441,15772610-15772960,15773050-15773202,15773527-15773748,15774056-15774274,15774356-15774473,15774628-15775760,15775968-15776165,15776476-15776735,15776938-15777127,15777203-15777310,15777757-15778109,15778311-15778419,15778665-15778805,15778930-15779026,15779118-15779185	AT4G32700.2  CDS  function Encodes a homolog of Drosophila MUS308 and mammalian DNA polymerase, which prevent spontaneous or DNA damage-induced production of DNA double strand breaks. Two conserved functional domains: an N-terminal superfamily II DNA/RNA helicase domain and a C-terminal prokaryotic-type DNA polymerase I domain. Required for regulated cell division and differentiation in meristems. Mutant plants show morphological defects, such as short roots, serrated leaves, and fasciation, as well as defective patterns of cell division and differentiation in the meristem. Mutant plants had 2.5 to 4.5-fold higher expression of ATGR1, ATBRCA1 and RAD51 genes.  go_process DNA replication|GO:0006260||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed DNA polymerase activity|GO:0003887||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  product DNA-directed DNA polymerase family protein  note DNA-directed DNA polymerase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA replication; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA-directed DNA polymerase, family A (InterPro:IPR001098), DNA/RNA helicase, C-terminal (InterPro:IPR001650), DNA polymerase A (InterPro:IPR002298), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase, putative (TAIR:AT2G42270.1); Has 12471 Blast hits to 11762 proteins in 1636 species: Archae - 373; Bacteria - 3859; Metazoa - 1081; Fungi - 775; Plants - 278; Viruses - 238; Other Eukaryotes - 5867 (source: NCBI BLink).  protein_id AT4G32700.2p  transcript_id AT4G32700.2  protein_id AT4G32700.2p  transcript_id AT4G32700.2  
At4g32710	chr4:015781362	0.0	W/15781362-15781758,15781840-15781926,15782014-15782084,15782214-15782299,15782483-15782630,15782767-15782928,15783027-15783242	AT4G32710.1  CDS  gene_syn F4D11.90, F4D11_90  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATPERK1 (PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1); ATP binding / protein kinase (TAIR:AT3G24550.1); Has 87667 Blast hits to 86649 proteins in 3166 species: Archae - 53; Bacteria - 7959; Metazoa - 38002; Fungi - 7110; Plants - 19079; Viruses - 374; Other Eukaryotes - 15090 (source: NCBI BLink).  protein_id AT4G32710.1p  transcript_id AT4G32710.1  protein_id AT4G32710.1p  transcript_id AT4G32710.1  
At4g32714	chr4:015784674	0.0	W/15784674-15784740,15784973-15785169	AT4G32714.1  CDS  gene_syn SCR-Like 25, SCRL25  gene SCRL25  function Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165||IEA  product SCRL25 (SCR-Like 25)  note SCR-Like 25 (SCRL25); INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility response (InterPro:IPR010682); BEST Arabidopsis thaliana protein match is: SCRL24 (SCR-Like 24) (TAIR:AT4G32717.1); Has 15 Blast hits to 15 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G32714.1p  transcript_id AT4G32714.1  protein_id AT4G32714.1p  transcript_id AT4G32714.1  
At4g32717	chr4:015786337	0.0	W/15786337-15786403,15786639-15786841	AT4G32717.1  CDS  gene_syn SCR-Like 24, SCRL24  gene SCRL24  function Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165||IEA  product SCRL24 (SCR-Like 24)  note SCR-Like 24 (SCRL24); INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility response (InterPro:IPR010682); BEST Arabidopsis thaliana protein match is: SCRL25 (SCR-Like 25) (TAIR:AT4G32714.1); Has 11 Blast hits to 11 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G32717.1p  transcript_id AT4G32717.1  protein_id AT4G32717.1p  transcript_id AT4G32717.1  
At4g32720	chr4:015787313	0.0	W/15787313-15787363,15787467-15787545,15787645-15787794,15788072-15788214,15788305-15788453,15788567-15788689,15788779-15789073,15789179-15789326,15789422-15789494,15789593-15789683	AT4G32720.1  CDS  gene_syn Arabidopsis thaliana La protein 1, AtLa1, F4D11.80, F4D11_80  gene AtLa1  function Encodes AtLa1, a member of the highly abundant phosphoprotein La proteins. Predominantly localized to the nucleoplasm and was also detected in the nucleolar cavity. Has RNA binding activity. Required for normal ribosome biogenesis and embryogenesis.  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleoplasm|GO:0005654|17459889|IDA  go_process embryonic development|GO:0009790|17459889|IMP  go_process ribosome biogenesis|GO:0042254|17459889|IMP  go_function RNA binding|GO:0003723|17459889|IDA  go_function RNA binding|GO:0003723||ISS  product AtLa1 (Arabidopsis thaliana La protein 1); RNA binding  note Arabidopsis thaliana La protein 1 (AtLa1); FUNCTIONS IN: RNA binding; INVOLVED IN: embryonic development, ribosome biogenesis; LOCATED IN: nucleoplasm, cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Lupus La protein (InterPro:IPR002344), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA binding motif (InterPro:IPR014886); BEST Arabidopsis thaliana protein match is: La domain-containing protein (TAIR:AT1G79880.1); Has 1654 Blast hits to 1519 proteins in 209 species: Archae - 0; Bacteria - 31; Metazoa - 813; Fungi - 217; Plants - 170; Viruses - 14; Other Eukaryotes - 409 (source: NCBI BLink).  protein_id AT4G32720.1p  transcript_id AT4G32720.1  protein_id AT4G32720.1p  transcript_id AT4G32720.1  
At4g32720	chr4:015787313	0.0	W/15787313-15787363,15787467-15787545,15787645-15787794,15788072-15788214,15788305-15788453,15788567-15788689,15788779-15789073,15789179-15789326,15789422-15789498	AT4G32720.2  CDS  gene_syn Arabidopsis thaliana La protein 1, AtLa1, F4D11.80, F4D11_80  gene AtLa1  function Encodes AtLa1, a member of the highly abundant phosphoprotein La proteins. Predominantly localized to the nucleoplasm and was also detected in the nucleolar cavity. Has RNA binding activity. Required for normal ribosome biogenesis and embryogenesis.  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleoplasm|GO:0005654|17459889|IDA  go_process embryonic development|GO:0009790|17459889|IMP  go_process ribosome biogenesis|GO:0042254|17459889|IMP  go_function RNA binding|GO:0003723|17459889|IDA  go_function RNA binding|GO:0003723||ISS  product AtLa1 (Arabidopsis thaliana La protein 1); RNA binding  note Arabidopsis thaliana La protein 1 (AtLa1); FUNCTIONS IN: RNA binding; INVOLVED IN: embryonic development, ribosome biogenesis; LOCATED IN: nucleoplasm, cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Lupus La protein (InterPro:IPR002344), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA binding motif (InterPro:IPR014886); BEST Arabidopsis thaliana protein match is: La domain-containing protein (TAIR:AT1G79880.1); Has 1549 Blast hits to 1410 proteins in 203 species: Archae - 0; Bacteria - 26; Metazoa - 757; Fungi - 188; Plants - 158; Viruses - 14; Other Eukaryotes - 406 (source: NCBI BLink).  protein_id AT4G32720.2p  transcript_id AT4G32720.2  protein_id AT4G32720.2p  transcript_id AT4G32720.2  
At4g32730	chr4:015791039	0.0	W/15791039-15791109,15791246-15791300,15791525-15791582,15791749-15791843,15791944-15792047,15792144-15792272,15792434-15794207,15794532-15794779,15794887-15795001,15795114-15795332,15795524-15795643	AT4G32730.2  CDS  gene_syn ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, ATMYB3R-1, ATMYB3R1, C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, F4D11.70, F4D11_70, MYB DOMAIN PROTEIN 3R1, MYB3R-1, MYB3R1, PC-MYB1  gene PC-MYB1  function Encodes a putative c-myb-like transcription factor with three MYB repeats.  go_process regulation of transcription, DNA-dependent|GO:0006355|10482656|ISS  go_process regulation of transcription|GO:0045449|17287251|IDA  go_function DNA binding|GO:0003677|10482656|TAS  go_function transcription factor activity|GO:0003700|10482656|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription coactivator activity|GO:0003713|17287251|IDA  product PC-MYB1; DNA binding / transcription coactivator/ transcription factor  note PC-MYB1; FUNCTIONS IN: transcription coactivator activity, transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB3R-4 (myb domain protein 3R-4); DNA binding / transcription coactivator/ transcription factor (TAIR:AT5G11510.1); Has 9662 Blast hits to 5899 proteins in 374 species: Archae - 0; Bacteria - 2; Metazoa - 976; Fungi - 666; Plants - 5187; Viruses - 6; Other Eukaryotes - 2825 (source: NCBI BLink).  protein_id AT4G32730.2p  transcript_id AT4G32730.2  protein_id AT4G32730.2p  transcript_id AT4G32730.2  
At4g32730	chr4:015791039	0.0	W/15791039-15791109,15791246-15791300,15791525-15791582,15791749-15791843,15791944-15792047,15792144-15792272,15792434-15794252	AT4G32730.1  CDS  gene_syn ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, ATMYB3R-1, ATMYB3R1, C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, F4D11.70, F4D11_70, MYB DOMAIN PROTEIN 3R1, MYB3R-1, MYB3R1, PC-MYB1  gene PC-MYB1  function Encodes a putative c-myb-like transcription factor with three MYB repeats.  go_process regulation of transcription, DNA-dependent|GO:0006355|10482656|ISS  go_process regulation of transcription|GO:0045449|17287251|IDA  go_function DNA binding|GO:0003677|10482656|TAS  go_function transcription factor activity|GO:0003700|10482656|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription coactivator activity|GO:0003713|17287251|IDA  product PC-MYB1; DNA binding / transcription coactivator/ transcription factor  note ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1 (ATMYB3R1); FUNCTIONS IN: transcription coactivator activity, transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB3R-4 (myb domain protein 3R-4); DNA binding / transcription coactivator/ transcription factor (TAIR:AT5G11510.2); Has 8978 Blast hits to 5887 proteins in 373 species: Archae - 0; Bacteria - 0; Metazoa - 1002; Fungi - 659; Plants - 4489; Viruses - 4; Other Eukaryotes - 2824 (source: NCBI BLink).  protein_id AT4G32730.1p  transcript_id AT4G32730.1  protein_id AT4G32730.1p  transcript_id AT4G32730.1  
At4g32750	chr4:015797716	0.0	C/15797716-15798091,15797095-15797175,15796415-15796839	AT4G32750.1  CDS  gene_syn F4D11.50, F4D11_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; Has 17 Blast hits to 17 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G32750.1p  transcript_id AT4G32750.1  protein_id AT4G32750.1p  transcript_id AT4G32750.1  
At4g32760	chr4:015799376	0.0	W/15799376-15799476,15799884-15799962,15800274-15800372,15800453-15800566,15800782-15800942,15801376-15801457,15801566-15801651,15802017-15802214,15802534-15802970,15803162-15803832	AT4G32760.1  CDS  gene_syn F4D11.40, F4D11_40  go_component plasma membrane|GO:0005886|17317660|IDA  go_process intracellular protein transport|GO:0006886||IEA  go_component Golgi stack|GO:0005795||ISS  go_process intracellular protein transport|GO:0006886||ISS  go_process intra-Golgi vesicle-mediated transport|GO:0006891||ISS  go_function protein transporter activity|GO:0008565||ISS  product protein transporter  note protein transporter; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), GAT (InterPro:IPR004152), VHS subgroup (InterPro:IPR018205), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: VHS domain-containing protein / GAT domain-containing protein (TAIR:AT3G08790.1); Has 18386 Blast hits to 12933 proteins in 541 species: Archae - 4; Bacteria - 507; Metazoa - 7666; Fungi - 3474; Plants - 2212; Viruses - 64; Other Eukaryotes - 4459 (source: NCBI BLink).  protein_id AT4G32760.1p  transcript_id AT4G32760.1  protein_id AT4G32760.1p  transcript_id AT4G32760.1  
At4g32765	chr4:015804549	0.0	W/15804549-15804630	AT4G32765.1  tRNA  gene_syn 67192.TRNA-SER-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: CGA)  transcript_id AT4G32765.1  
At4g32770	chr4:015804981	0.0	W/15804981-15805222,15805523-15805767,15805978-15806057,15806217-15806293,15806406-15806575,15806725-15806822,15806946-15807053,15807144-15807260,15807357-15807506,15807611-15807790	AT4G32770.1  CDS  gene_syn ATSDX1, F4D11.30, F4D11_30, SUCROSE EXPORT DEFECTIVE 1, VITAMIN E DEFICIENT 1, VTE1  gene VTE1  function Tocopherol cyclase involved in tocopherol (vitamin E)synthesis. VTE1 over-expressing plants have increased tocopherol indicating VTE1 is a major limiting factor in tocopherol synthesis. Mutants defective in this gene accumulate high amounts of zeaxanthin in conditions of high light or low temperature. Plays a role in the adaptation to low temperature stress, notably phloem loading.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_component chloroplast|GO:0009507|12213958|ISS  go_component chloroplast inner membrane|GO:0009706|12213958|TAS  go_component plastoglobule|GO:0010287|16461379|IDA  go_process fatty acid metabolic process|GO:0006631|16258032|IGI  go_process response to oxidative stress|GO:0006979|15665245|IEP  go_process response to temperature stimulus|GO:0009266|17012603|IMP  go_process response to high light intensity|GO:0009644|15665245|IEP  go_process phloem loading|GO:0009915|17012603|IMP  go_process vitamin E biosynthetic process|GO:0010189|12213958|IDA  go_process chlorophyll metabolic process|GO:0015994|16258032|IGI  go_process xanthophyll metabolic process|GO:0016122|16258032|IMP  go_process regulation of defense response|GO:0031347|17194769|IMP  go_function tocopherol cyclase activity|GO:0009976|12213958|IDA  go_function tocopherol cyclase activity|GO:0009976|12913173|IMP  product VTE1 (VITAMIN E DEFICIENT 1); tocopherol cyclase  note VITAMIN E DEFICIENT 1 (VTE1); FUNCTIONS IN: tocopherol cyclase activity; INVOLVED IN: in 9 processes; LOCATED IN: chloroplast, plastoglobule, chloroplast inner membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 150 Blast hits to 150 proteins in 52 species: Archae - 2; Bacteria - 66; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT4G32770.1p  transcript_id AT4G32770.1  protein_id AT4G32770.1p  transcript_id AT4G32770.1  
At4g32780	chr4:015808926	0.0	W/15808926-15808980,15809056-15809354,15809886-15809951,15810515-15810907	AT4G32780.1  CDS  gene_syn F4D11.20, F4D11_20  go_component cellular_component|GO:0005575||ND  go_process signal transduction|GO:0007165|15358268|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product phosphoinositide binding  note phosphoinositide binding; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF828, plant (InterPro:IPR008546); BEST Arabidopsis thaliana protein match is: phosphoinositide binding (TAIR:AT5G43870.1); Has 337 Blast hits to 165 proteins in 29 species: Archae - 2; Bacteria - 17; Metazoa - 10; Fungi - 3; Plants - 103; Viruses - 6; Other Eukaryotes - 196 (source: NCBI BLink).  protein_id AT4G32780.1p  transcript_id AT4G32780.1  protein_id AT4G32780.1p  transcript_id AT4G32780.1  
At4g32785	chr4:015811086	0.0	W/15811086-15811134,15811217-15811266,15811358-15811415,15811526-15811743	AT4G32785.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pleckstrin-like, plant (InterPro:IPR013666), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: phosphoinositide binding (TAIR:AT3G63300.2); Has 71 Blast hits to 71 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G32785.1p  transcript_id AT4G32785.1  protein_id AT4G32785.1p  transcript_id AT4G32785.1  
At4g32790	chr4:015812566	0.0	W/15812566-15813207,15813307-15813437,15813805-15814153,15814249-15814908	AT4G32790.1  CDS  gene_syn F4D11.10, F4D11_10  go_component mitochondrion|GO:0005739||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product exostosin family protein  note exostosin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, membrane; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: exostosin family protein (TAIR:AT5G25820.1); Has 835 Blast hits to 831 proteins in 95 species: Archae - 0; Bacteria - 11; Metazoa - 245; Fungi - 4; Plants - 471; Viruses - 5; Other Eukaryotes - 99 (source: NCBI BLink).  protein_id AT4G32790.1p  transcript_id AT4G32790.1  protein_id AT4G32790.1p  transcript_id AT4G32790.1  
At4g32800	chr4:015819812	0.0	W/15819812-15820477	AT4G32800.1  CDS  gene_syn T16I18.10, T16I18_10  function encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor TINY, putative  note AP2 domain-containing transcription factor TINY, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT2G25820.1); Has 3623 Blast hits to 3611 proteins in 197 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 3617; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G32800.1p  transcript_id AT4G32800.1  protein_id AT4G32800.1p  transcript_id AT4G32800.1  
At4g32810	chr4:015828348	0.0	W/15828348-15828662,15829404-15830165,15830428-15830624,15830712-15830901,15830980-15831082,15831154-15831299	AT4G32810.1  CDS  gene_syn ATCCD8, CAROTENOID CLEAVAGE DIOXYGENASE 8, CCD8, MAX4, MORE AXILLARY BRANCHING 4, T16I18.20, T16I18_20  gene CCD8  function Encodes a protein with similarity to carotenoid cleaving deoxygenases, the enzymes that cleave beta-carotene. Involved in the production of a graft transmissable signal to suppress axillary branching. Protein is localized to chloroplast stroma and expressed primarily in root tip. Mutants in the gene exhibit increased shoot branching, and light-dependent defects in hook opening and hypocotyl/root elongation. Only upregulated by auxin in the root and hypocotyl, and this is not required for the inhibition of shoot branching.  go_component chloroplast|GO:0009507|16507088|RCA  go_component chloroplast|GO:0009507||NAS  go_component chloroplast stroma|GO:0009570|16507088|IDA  go_process response to auxin stimulus|GO:0009733|12815068|IMP  go_process auxin metabolic process|GO:0009850|16507088|IMP  go_process auxin polar transport|GO:0009926|16546078|IMP  go_process leaf morphogenesis|GO:0009965|16507088|IMP  go_process secondary shoot formation|GO:0010223|12815068|IMP  go_process secondary shoot formation|GO:0010223|16507088|IGI  go_process secondary shoot formation|GO:0010223|16507088|IMP  go_process carotene catabolic process|GO:0016121|16507088|IDA  go_process xanthophyll catabolic process|GO:0016124|16507088|IDA  go_function oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|GO:0016702|12815068|ISS  product CCD8 (CAROTENOID CLEAVAGE DIOXYGENASE 8); oxidoreductase, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen  note CAROTENOID CLEAVAGE DIOXYGENASE 8 (CCD8); FUNCTIONS IN: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen; INVOLVED IN: in 7 processes; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 10 plant structures; CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: NCED6 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 6); 9-cis-epoxycarotenoid dioxygenase (TAIR:AT3G24220.1); Has 1994 Blast hits to 1941 proteins in 353 species: Archae - 11; Bacteria - 517; Metazoa - 323; Fungi - 80; Plants - 560; Viruses - 0; Other Eukaryotes - 503 (source: NCBI BLink).  protein_id AT4G32810.1p  transcript_id AT4G32810.1  protein_id AT4G32810.1p  transcript_id AT4G32810.1  
At4g32820	chr4:015841452	0.0	C/15841452-15841454,15841280-15841354,15841048-15841167,15840932-15840972,15840595-15840806,15838694-15840477,15838090-15838305,15837322-15837891,15836564-15836768,15835904-15836128,15835663-15835769,15835030-15835187,15834748-15834940,15834176-15834567,15833770-15833950,15833133-15833356,15832385-15833048,15832118-15832172,15831679-15831782	AT4G32820.1  CDS  gene_syn T16I18.30, T16I18_30  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); Has 111 Blast hits to 103 proteins in 42 species: Archae - 5; Bacteria - 11; Metazoa - 60; Fungi - 3; Plants - 15; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT4G32820.1p  transcript_id AT4G32820.1  protein_id AT4G32820.1p  transcript_id AT4G32820.1  
At4g32820	chr4:015841452	0.0	C/15841452-15841454,15841280-15841354,15841048-15841167,15840932-15840972,15840595-15840806,15838694-15840477,15838090-15838305,15837995-15838021,15837322-15837891,15836564-15836768,15835904-15836128,15835663-15835769,15835030-15835187,15834748-15834940,15834176-15834567,15833770-15833950,15833133-15833356,15832385-15833048,15832118-15832172,15831679-15831782	AT4G32820.2  CDS  gene_syn T16I18.30, T16I18_30  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026).  protein_id AT4G32820.2p  transcript_id AT4G32820.2  protein_id AT4G32820.2p  transcript_id AT4G32820.2  
At4g32830	chr4:015842557	0.0	W/15842557-15842592,15842838-15842957,15843098-15843244,15843333-15843428,15843512-15843607,15843700-15843796,15843879-15843996,15844084-15844156,15844253-15844354	AT4G32830.1  CDS  gene_syn ATAURORA1, AtAUR1, T16I18.40, T16I18_40  gene AtAUR1  function Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis.  go_component nucleus|GO:0005634|15469496|IDA  go_component nucleus|GO:0005634|15722465|IDA  go_component nucleolus|GO:0005730|15469496|IDA  go_component spindle|GO:0005819|15469496|IDA  go_process histone phosphorylation|GO:0016572|15722465|IDA  go_process histone phosphorylation|GO:0016572|16028112|IDA  go_function protein serine/threonine kinase activity|GO:0004674|15722465|IDA  go_function kinase activity|GO:0016301||ISS  go_function histone kinase activity (H3-S10 specific)|GO:0035175|16028112|IDA  product AtAUR1 (ATAURORA1); histone kinase(H3-S10 specific) / kinase/ protein serine/threonine kinase  note ATAURORA1 (AtAUR1); FUNCTIONS IN: protein serine/threonine kinase activity, histone kinase activity (H3-S10 specific), kinase activity; INVOLVED IN: histone phosphorylation; LOCATED IN: nucleolus, nucleus, spindle; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: AtAUR2 (AtAurora2); histone kinase(H3-S10 specific) / kinase (TAIR:AT2G25880.1); Has 95744 Blast hits to 94068 proteins in 3060 species: Archae - 66; Bacteria - 8585; Metazoa - 41272; Fungi - 8599; Plants - 18610; Viruses - 511; Other Eukaryotes - 18101 (source: NCBI BLink).  protein_id AT4G32830.1p  transcript_id AT4G32830.1  protein_id AT4G32830.1p  transcript_id AT4G32830.1  
At4g32840	chr4:015848201	0.0	C/15848201-15848305,15847613-15847659,15847490-15847529,15847324-15847386,15847093-15847230,15846691-15846849,15846531-15846584,15846221-15846289,15845982-15846111,15845605-15845861,15845454-15845502,15845222-15845376,15845010-15845132	AT4G32840.1  CDS  gene_syn PFK6, PHOSPHOFRUCTOKINASE 6, T16I18.50, T16I18_50  gene PFK6  go_component cytosol|GO:0005829|17485088|IDA  go_component 6-phosphofructokinase complex|GO:0005945||ISS  go_process glycolysis|GO:0006096|17485088|IDA  go_process glycolysis|GO:0006096||ISS  go_function 6-phosphofructokinase activity|GO:0003872|17485088|IDA  go_function 6-phosphofructokinase activity|GO:0003872||ISS  product PFK6 (PHOSPHOFRUCTOKINASE 6); 6-phosphofructokinase  note PHOSPHOFRUCTOKINASE 6 (PFK6); FUNCTIONS IN: 6-phosphofructokinase activity; INVOLVED IN: glycolysis; LOCATED IN: cytosol, 6-phosphofructokinase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase TP0108 (InterPro:IPR012004), Phosphofructokinase (InterPro:IPR000023); BEST Arabidopsis thaliana protein match is: PFK1 (PHOSPHOFRUCTOKINASE 1); 6-phosphofructokinase (TAIR:AT4G29220.1); Has 4932 Blast hits to 4525 proteins in 1180 species: Archae - 20; Bacteria - 2587; Metazoa - 575; Fungi - 273; Plants - 227; Viruses - 2; Other Eukaryotes - 1248 (source: NCBI BLink).  protein_id AT4G32840.1p  transcript_id AT4G32840.1  protein_id AT4G32840.1p  transcript_id AT4G32840.1  
At4g32850	chr4:015850134	0.0	W/15850134-15850268,15850366-15850443,15850770-15850877,15851050-15851112,15851181-15851342,15851679-15851792,15851874-15851936,15852018-15852347,15852426-15852590,15852728-15853561,15853670-15853753,15853892-15853906	AT4G32850.7  CDS  gene_syn NUCLEAR POLY(A) POLYMERASE, PAP(IV), nPAP, poly(A) polymerase IV  gene nPAP  function Encodes a nuclear poly(A) polymerase.  go_component nucleus|GO:0005634|15297145|IDA  go_process RNA polyadenylation|GO:0043631|15297145|IDA  go_function protein binding|GO:0005515|15297145|IPI  go_function nucleotidyltransferase activity|GO:0016779||ISS  product nPAP (NUCLEAR POLY(A) POLYMERASE); nucleotidyltransferase/ protein binding  note NUCLEAR POLY(A) POLYMERASE (nPAP); FUNCTIONS IN: protein binding, nucleotidyltransferase activity; INVOLVED IN: RNA polyadenylation; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Poly(A) polymerase, central region (InterPro:IPR007012), Nucleotidyltransferase (InterPro:IPR002934), Poly(A) polymerase, RNA-binding region (InterPro:IPR007010); BEST Arabidopsis thaliana protein match is: nucleotidyltransferase family protein (TAIR:AT2G25850.3); Has 583 Blast hits to 583 proteins in 160 species: Archae - 0; Bacteria - 9; Metazoa - 233; Fungi - 133; Plants - 104; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT4G32850.7p  transcript_id AT4G32850.7  protein_id AT4G32850.7p  transcript_id AT4G32850.7  
At4g32850	chr4:015850134	0.0	W/15850134-15850268,15850366-15850443,15850770-15850877,15851050-15851112,15851181-15851342,15851679-15851792,15851874-15851936,15852018-15852347,15852426-15852590,15852728-15853561,15853670-15853753,15854165-15854211,15854318-15854351	AT4G32850.2  CDS  gene_syn NUCLEAR POLY(A) POLYMERASE, PAP(IV), nPAP, poly(A) polymerase IV  gene nPAP  function Encodes a nuclear poly(A) polymerase.  go_component nucleus|GO:0005634|15297145|IDA  go_process RNA polyadenylation|GO:0043631|15297145|IDA  go_function protein binding|GO:0005515|15297145|IPI  go_function nucleotidyltransferase activity|GO:0016779||ISS  product nPAP (NUCLEAR POLY(A) POLYMERASE); nucleotidyltransferase/ protein binding  note NUCLEAR POLY(A) POLYMERASE (nPAP); FUNCTIONS IN: protein binding, nucleotidyltransferase activity; INVOLVED IN: RNA polyadenylation; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Poly(A) polymerase, central region (InterPro:IPR007012), Nucleotidyltransferase (InterPro:IPR002934), Poly(A) polymerase, RNA-binding region (InterPro:IPR007010); BEST Arabidopsis thaliana protein match is: nucleotidyltransferase family protein (TAIR:AT2G25850.1); Has 584 Blast hits to 584 proteins in 160 species: Archae - 0; Bacteria - 9; Metazoa - 233; Fungi - 133; Plants - 105; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT4G32850.2p  transcript_id AT4G32850.2  protein_id AT4G32850.2p  transcript_id AT4G32850.2  
At4g32850	chr4:015850134	0.0	W/15850134-15850268,15850366-15850443,15850770-15850877,15851050-15851112,15851181-15851342,15851679-15851792,15851874-15851936,15852018-15852347,15852426-15852590,15852728-15853561,15853670-15853753,15854165-15854211,15854318-15854351	AT4G32850.6  CDS  gene_syn NUCLEAR POLY(A) POLYMERASE, PAP(IV), nPAP, poly(A) polymerase IV  gene nPAP  function Encodes a nuclear poly(A) polymerase.  go_component nucleus|GO:0005634|15297145|IDA  go_process RNA polyadenylation|GO:0043631|15297145|IDA  go_function protein binding|GO:0005515|15297145|IPI  go_function nucleotidyltransferase activity|GO:0016779||ISS  product nPAP (NUCLEAR POLY(A) POLYMERASE); nucleotidyltransferase/ protein binding  note NUCLEAR POLY(A) POLYMERASE (nPAP); FUNCTIONS IN: protein binding, nucleotidyltransferase activity; INVOLVED IN: RNA polyadenylation; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Poly(A) polymerase, central region (InterPro:IPR007012), Nucleotidyltransferase (InterPro:IPR002934), Poly(A) polymerase, RNA-binding region (InterPro:IPR007010); BEST Arabidopsis thaliana protein match is: nucleotidyltransferase family protein (TAIR:AT2G25850.1); Has 584 Blast hits to 584 proteins in 160 species: Archae - 0; Bacteria - 9; Metazoa - 233; Fungi - 133; Plants - 105; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT4G32850.6p  transcript_id AT4G32850.6  protein_id AT4G32850.6p  transcript_id AT4G32850.6  
At4g32850	chr4:015850134	0.0	W/15850134-15850268,15850366-15850443,15850770-15850877,15851050-15851112,15851181-15851342,15851679-15851792,15851874-15851936,15852018-15852347,15852426-15852590,15852728-15853561,15853670-15853753,15854165-15854211,15854327-15854351	AT4G32850.3  CDS  gene_syn NUCLEAR POLY(A) POLYMERASE, PAP(IV), nPAP, poly(A) polymerase IV  gene nPAP  function Encodes a nuclear poly(A) polymerase.  go_component nucleus|GO:0005634|15297145|IDA  go_process RNA polyadenylation|GO:0043631|15297145|IDA  go_function protein binding|GO:0005515|15297145|IPI  go_function nucleotidyltransferase activity|GO:0016779||ISS  product nPAP (NUCLEAR POLY(A) POLYMERASE); nucleotidyltransferase/ protein binding  note NUCLEAR POLY(A) POLYMERASE (nPAP); FUNCTIONS IN: protein binding, nucleotidyltransferase activity; INVOLVED IN: RNA polyadenylation; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Poly(A) polymerase, central region (InterPro:IPR007012), Nucleotidyltransferase (InterPro:IPR002934), Poly(A) polymerase, RNA-binding region (InterPro:IPR007010); BEST Arabidopsis thaliana protein match is: nucleotidyltransferase family protein (TAIR:AT2G25850.3); Has 584 Blast hits to 584 proteins in 160 species: Archae - 0; Bacteria - 9; Metazoa - 233; Fungi - 133; Plants - 105; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT4G32850.3p  transcript_id AT4G32850.3  protein_id AT4G32850.3p  transcript_id AT4G32850.3  
At4g32850	chr4:015850134	0.0	W/15850134-15850268,15850366-15850443,15850770-15850877,15851050-15851112,15851181-15851342,15851679-15851792,15851874-15851936,15852018-15852347,15852426-15852590,15852728-15853561,15853670-15853753,15854165-15854241,15854327-15854351	AT4G32850.5  CDS  gene_syn NUCLEAR POLY(A) POLYMERASE, PAP(IV), nPAP, poly(A) polymerase IV  gene nPAP  function Encodes a nuclear poly(A) polymerase.  go_component nucleus|GO:0005634|15297145|IDA  go_process RNA polyadenylation|GO:0043631|15297145|IDA  go_function protein binding|GO:0005515|15297145|IPI  go_function nucleotidyltransferase activity|GO:0016779||ISS  product nPAP (NUCLEAR POLY(A) POLYMERASE); nucleotidyltransferase/ protein binding  note NUCLEAR POLY(A) POLYMERASE (nPAP); FUNCTIONS IN: protein binding, nucleotidyltransferase activity; INVOLVED IN: RNA polyadenylation; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Poly(A) polymerase, central region (InterPro:IPR007012), Nucleotidyltransferase (InterPro:IPR002934), Poly(A) polymerase, RNA-binding region (InterPro:IPR007010); BEST Arabidopsis thaliana protein match is: nucleotidyltransferase family protein (TAIR:AT2G25850.2); Has 584 Blast hits to 584 proteins in 160 species: Archae - 0; Bacteria - 9; Metazoa - 233; Fungi - 133; Plants - 105; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT4G32850.5p  transcript_id AT4G32850.5  protein_id AT4G32850.5p  transcript_id AT4G32850.5  
At4g32850	chr4:015850134	0.0	W/15850134-15850268,15850366-15850443,15850770-15850877,15851050-15851112,15851181-15851342,15851679-15851792,15851874-15851936,15852018-15852347,15852426-15852590,15852728-15853561,15853670-15853753,15854165-15854241,15854327-15854351	AT4G32850.9  CDS  gene_syn NUCLEAR POLY(A) POLYMERASE, PAP(IV), nPAP, poly(A) polymerase IV  gene nPAP  function Encodes a nuclear poly(A) polymerase.  go_component nucleus|GO:0005634|15297145|IDA  go_process RNA polyadenylation|GO:0043631|15297145|IDA  go_function protein binding|GO:0005515|15297145|IPI  go_function nucleotidyltransferase activity|GO:0016779||ISS  product nPAP (NUCLEAR POLY(A) POLYMERASE); nucleotidyltransferase/ protein binding  note NUCLEAR POLY(A) POLYMERASE (nPAP); FUNCTIONS IN: protein binding, nucleotidyltransferase activity; INVOLVED IN: RNA polyadenylation; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Poly(A) polymerase, central region (InterPro:IPR007012), Nucleotidyltransferase (InterPro:IPR002934), Poly(A) polymerase, RNA-binding region (InterPro:IPR007010); BEST Arabidopsis thaliana protein match is: nucleotidyltransferase family protein (TAIR:AT2G25850.2); Has 584 Blast hits to 584 proteins in 160 species: Archae - 0; Bacteria - 9; Metazoa - 233; Fungi - 133; Plants - 105; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT4G32850.9p  transcript_id AT4G32850.9  protein_id AT4G32850.9p  transcript_id AT4G32850.9  
At4g32850	chr4:015850134	0.0	W/15850134-15850268,15850366-15850443,15850770-15850877,15851050-15851112,15851181-15851342,15851679-15851792,15851874-15851936,15852018-15852347,15852426-15852590,15852728-15853561,15853670-15853753,15854165-15854241,15854363-15854375	AT4G32850.1  CDS  gene_syn NUCLEAR POLY(A) POLYMERASE, PAP(IV), nPAP, poly(A) polymerase IV  gene nPAP  function Encodes a nuclear poly(A) polymerase.  go_component nucleus|GO:0005634|15297145|IDA  go_process RNA polyadenylation|GO:0043631|15297145|IDA  go_function protein binding|GO:0005515|15297145|IPI  go_function nucleotidyltransferase activity|GO:0016779||ISS  product nPAP (NUCLEAR POLY(A) POLYMERASE); nucleotidyltransferase/ protein binding  note NUCLEAR POLY(A) POLYMERASE (nPAP); FUNCTIONS IN: protein binding, nucleotidyltransferase activity; INVOLVED IN: RNA polyadenylation; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Poly(A) polymerase, central region (InterPro:IPR007012), Nucleotidyltransferase (InterPro:IPR002934), Poly(A) polymerase, RNA-binding region (InterPro:IPR007010); BEST Arabidopsis thaliana protein match is: nucleotidyltransferase family protein (TAIR:AT2G25850.2); Has 584 Blast hits to 584 proteins in 160 species: Archae - 0; Bacteria - 9; Metazoa - 233; Fungi - 133; Plants - 105; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT4G32850.1p  transcript_id AT4G32850.1  protein_id AT4G32850.1p  transcript_id AT4G32850.1  
At4g32850	chr4:015850134	0.0	W/15850134-15850268,15850366-15850443,15850770-15850877,15851050-15851112,15851181-15851342,15851679-15851792,15851874-15851936,15852018-15852347,15852426-15852590,15852728-15853561,15853670-15853753,15854165-15854245,15854363-15854443	AT4G32850.8  CDS  gene_syn NUCLEAR POLY(A) POLYMERASE, PAP(IV), nPAP, poly(A) polymerase IV  gene nPAP  function Encodes a nuclear poly(A) polymerase.  go_component nucleus|GO:0005634|15297145|IDA  go_process RNA polyadenylation|GO:0043631|15297145|IDA  go_function protein binding|GO:0005515|15297145|IPI  go_function nucleotidyltransferase activity|GO:0016779||ISS  product nPAP (NUCLEAR POLY(A) POLYMERASE); nucleotidyltransferase/ protein binding  note NUCLEAR POLY(A) POLYMERASE (nPAP); FUNCTIONS IN: protein binding, nucleotidyltransferase activity; INVOLVED IN: RNA polyadenylation; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Poly(A) polymerase, central region (InterPro:IPR007012), Nucleotidyltransferase (InterPro:IPR002934), Poly(A) polymerase, RNA-binding region (InterPro:IPR007010); BEST Arabidopsis thaliana protein match is: nucleotidyltransferase family protein (TAIR:AT2G25850.2); Has 584 Blast hits to 584 proteins in 160 species: Archae - 0; Bacteria - 9; Metazoa - 233; Fungi - 133; Plants - 105; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT4G32850.8p  transcript_id AT4G32850.8  protein_id AT4G32850.8p  transcript_id AT4G32850.8  
At4g32850	chr4:015850134	0.0	W/15850134-15850268,15850366-15850443,15850770-15850877,15851050-15851112,15851181-15851342,15851679-15851792,15851874-15851936,15852018-15852347,15852426-15852590,15852728-15853561,15853670-15853753,15854165-15854266	AT4G32850.10  CDS  gene_syn NUCLEAR POLY(A) POLYMERASE, PAP(IV), nPAP, poly(A) polymerase IV  gene nPAP  function Encodes a nuclear poly(A) polymerase.  go_component nucleus|GO:0005634|15297145|IDA  go_process RNA polyadenylation|GO:0043631|15297145|IDA  go_function protein binding|GO:0005515|15297145|IPI  go_function nucleotidyltransferase activity|GO:0016779||ISS  product nPAP (NUCLEAR POLY(A) POLYMERASE); nucleotidyltransferase/ protein binding  note NUCLEAR POLY(A) POLYMERASE (nPAP); FUNCTIONS IN: protein binding, nucleotidyltransferase activity; INVOLVED IN: RNA polyadenylation; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Poly(A) polymerase, central region (InterPro:IPR007012), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Nucleotidyltransferase (InterPro:IPR002934), Poly(A) polymerase, RNA-binding region (InterPro:IPR007010); BEST Arabidopsis thaliana protein match is: nucleotidyltransferase family protein (TAIR:AT2G25850.2); Has 589 Blast hits to 588 proteins in 160 species: Archae - 0; Bacteria - 9; Metazoa - 235; Fungi - 133; Plants - 108; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT4G32850.10p  transcript_id AT4G32850.10  protein_id AT4G32850.10p  transcript_id AT4G32850.10  
At4g32850	chr4:015850134	0.0	W/15850134-15850268,15850366-15850443,15850770-15850877,15851050-15851112,15851181-15851342,15851679-15851792,15851874-15851936,15852018-15852347,15852426-15852590,15852728-15853561,15853670-15853810	AT4G32850.4  CDS  gene_syn NUCLEAR POLY(A) POLYMERASE, PAP(IV), nPAP, poly(A) polymerase IV  gene nPAP  function Encodes a nuclear poly(A) polymerase.  go_component nucleus|GO:0005634|15297145|IDA  go_process RNA polyadenylation|GO:0043631|15297145|IDA  go_function protein binding|GO:0005515|15297145|IPI  go_function nucleotidyltransferase activity|GO:0016779||ISS  product nPAP (NUCLEAR POLY(A) POLYMERASE); nucleotidyltransferase/ protein binding  note NUCLEAR POLY(A) POLYMERASE (nPAP); FUNCTIONS IN: protein binding, nucleotidyltransferase activity; INVOLVED IN: RNA polyadenylation; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Poly(A) polymerase, central region (InterPro:IPR007012), Nucleotidyltransferase (InterPro:IPR002934), Poly(A) polymerase, RNA-binding region (InterPro:IPR007010); BEST Arabidopsis thaliana protein match is: nucleotidyltransferase family protein (TAIR:AT2G25850.3); Has 583 Blast hits to 583 proteins in 160 species: Archae - 0; Bacteria - 9; Metazoa - 233; Fungi - 133; Plants - 104; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT4G32850.4p  transcript_id AT4G32850.4  protein_id AT4G32850.4p  transcript_id AT4G32850.4  
At4g32860	chr4:015856710	0.0	C/15856710-15857309	AT4G32860.1  CDS  gene_syn T16I18.70, T16I18_70  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; Has 19 Blast hits to 19 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G32860.1p  transcript_id AT4G32860.1  protein_id AT4G32860.1p  transcript_id AT4G32860.1  
At4g32870	chr4:015862168	0.0	W/15862168-15862641	AT4G32870.1  CDS  gene_syn T16I18.80, T16I18_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25770.2); Has 160 Blast hits to 160 proteins in 69 species: Archae - 0; Bacteria - 87; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT4G32870.1p  transcript_id AT4G32870.1  protein_id AT4G32870.1p  transcript_id AT4G32870.1  
At4g32880	chr4:015867620	0.0	C/15867620-15867822,15867374-15867533,15867187-15867290,15866964-15867054,15866786-15866881,15866582-15866695,15866396-15866479,15866164-15866319,15865916-15865990,15865725-15865831,15865444-15865639,15865175-15865360,15864994-15865074,15864585-15864719,15864094-15864504,15863847-15864002,15863587-15863733	AT4G32880.1  CDS  gene_syn ATHB-8, ATHB8, HOMEOBOX GENE 8, T16I18.90, T16I18_90  gene ATHB-8  function member of homeodomain-leucine zipper family, acting as a differentiation-promoting transcription factor of the vascular meristems.  go_component nucleus|GO:0005634|16581911|IDA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process positive regulation of cell proliferation|GO:0008284|11402194|IMP  go_process response to auxin stimulus|GO:0009733|12644682|IEP  go_process response to auxin stimulus|GO:0009733|8575317|IEP  go_process meristem initiation|GO:0010014|15598805|IMP  go_process primary shoot apical meristem specification|GO:0010072|15598805|IMP  go_process xylem histogenesis|GO:0010089|11402194|IMP  go_process positive regulation of cell differentiation|GO:0045597|11402194|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ATHB-8 (HOMEOBOX GENE 8); DNA binding / transcription factor  note HOMEOBOX GENE 8 (ATHB-8); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), MEKHLA (InterPro:IPR013978), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ATHB-15; DNA binding / transcription factor (TAIR:AT1G52150.1); Has 2467 Blast hits to 2424 proteins in 205 species: Archae - 0; Bacteria - 6; Metazoa - 725; Fungi - 61; Plants - 1656; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT4G32880.1p  transcript_id AT4G32880.1  protein_id AT4G32880.1p  transcript_id AT4G32880.1  
At4g32890	chr4:015875598	0.0	W/15875598-15875816,15875908-15876615	AT4G32890.1  CDS  gene_syn F26P21.10, F26P21_10  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product zinc finger (GATA type) family protein  note zinc finger (GATA type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: zinc finger (GATA type) family protein (TAIR:AT5G25830.1); Has 853 Blast hits to 838 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 373; Plants - 407; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT4G32890.1p  transcript_id AT4G32890.1  protein_id AT4G32890.1p  transcript_id AT4G32890.1  
At4g32900	chr4:015880938	0.0	C/15880938-15880979,15880165-15880365,15879822-15879882,15879713-15879749,15879542-15879623	AT4G32900.1  CDS  gene_syn F26P21.20, F26P21_20  go_process translation|GO:0006412||IEA  go_function aminoacyl-tRNA hydrolase activity|GO:0004045||IEA  product aminoacyl-tRNA hydrolase  note aminoacyl-tRNA hydrolase; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, PTH2 (InterPro:IPR002833); BEST Arabidopsis thaliana protein match is: aminoacyl-tRNA hydrolase (TAIR:AT3G03010.2); Has 487 Blast hits to 487 proteins in 195 species: Archae - 103; Bacteria - 0; Metazoa - 148; Fungi - 84; Plants - 38; Viruses - 6; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT4G32900.1p  transcript_id AT4G32900.1  protein_id AT4G32900.1p  transcript_id AT4G32900.1  
At4g32900	chr4:015880938	0.0	C/15880938-15880979,15880165-15880365,15879822-15879882,15879713-15879749,15879546-15879623,15879346-15879418,15879072-15879111,15878944-15878993	AT4G32900.2  CDS  gene_syn F26P21.20, F26P21_20  go_process translation|GO:0006412||IEA  go_function aminoacyl-tRNA hydrolase activity|GO:0004045||IEA  product aminoacyl-tRNA hydrolase  note aminoacyl-tRNA hydrolase; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, PTH2 (InterPro:IPR002833); BEST Arabidopsis thaliana protein match is: aminoacyl-tRNA hydrolase (TAIR:AT5G16870.1); Has 486 Blast hits to 486 proteins in 195 species: Archae - 103; Bacteria - 0; Metazoa - 148; Fungi - 84; Plants - 38; Viruses - 6; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT4G32900.2p  transcript_id AT4G32900.2  protein_id AT4G32900.2p  transcript_id AT4G32900.2  
At4g32910	chr4:015881364	0.0	W/15881364-15881740,15881867-15881969,15882096-15882206,15882293-15882376,15882465-15882536,15882631-15882687,15882820-15882939,15883021-15883221,15883321-15883431,15883523-15883560,15883658-15883814,15883926-15884027,15884140-15884196,15884297-15884443,15884549-15884619,15884714-15884801,15884875-15884931,15885013-15885210	AT4G32910.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoporin, Nup85-like (InterPro:IPR011502); Has 161 Blast hits to 158 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 128; Fungi - 10; Plants - 21; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G32910.1p  transcript_id AT4G32910.1  protein_id AT4G32910.1p  transcript_id AT4G32910.1  
At4g32915	chr4:015885549	0.0	W/15885549-15885791,15885874-15885914,15886017-15886072,15886405-15886456,15886553-15886628	AT4G32915.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process regulation of translational fidelity|GO:0006450||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of translational fidelity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glu-tRNAGln amidotransferase, C subunit (InterPro:IPR003837); Has 1227 Blast hits to 1227 proteins in 425 species: Archae - 17; Bacteria - 884; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 309 (source: NCBI BLink).  protein_id AT4G32915.1p  transcript_id AT4G32915.1  protein_id AT4G32915.1p  transcript_id AT4G32915.1  
At4g32920	chr4:015895195	0.0	C/15895195-15896006,15894670-15894785,15894312-15894520,15894085-15894204,15893881-15894009,15893660-15893785,15893324-15893379,15893116-15893215,15892930-15893047,15892615-15892824,15891946-15892267,15891682-15891775,15891196-15891304,15890796-15891067,15890349-15890476,15890026-15890260,15889591-15889779,15889199-15889476,15888922-15889117,15888593-15888835,15888392-15888480,15888153-15888300	AT4G32920.1  CDS  gene_syn F26P21.40, F26P21_40  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT5G11700.1); Has 16804 Blast hits to 4740 proteins in 490 species: Archae - 4; Bacteria - 10591; Metazoa - 2006; Fungi - 354; Plants - 1497; Viruses - 163; Other Eukaryotes - 2189 (source: NCBI BLink).  protein_id AT4G32920.1p  transcript_id AT4G32920.1  protein_id AT4G32920.1p  transcript_id AT4G32920.1  
At4g32924	chr4:015897198	0.0	C/15897198-15897428	AT4G32924.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G32924.1p  transcript_id AT4G32924.1  protein_id AT4G32924.1p  transcript_id AT4G32924.1  
At4g32930	chr4:015898878	0.0	W/15898878-15898979,15899397-15899504,15899774-15899941,15900060-15900185	AT4G32930.1  CDS  gene_syn F26P21.50, F26P21_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF866, eukaryotic (InterPro:IPR008584); Has 275 Blast hits to 274 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 73; Plants - 42; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT4G32930.1p  transcript_id AT4G32930.1  protein_id AT4G32930.1p  transcript_id AT4G32930.1  
At4g32940	chr4:015902934	0.0	C/15902934-15903161,15902513-15902677,15902275-15902431,15902113-15902198,15901834-15902033,15901672-15901720,15901349-15901558,15901048-15901254,15900557-15900739	AT4G32940.1  CDS  gene_syn F26P21.60, F26P21_60, GAMMA VACUOLAR PROCESSING ENZYME, GAMMA-VPE, GAMMAVPE  gene GAMMA-VPE  function Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions. They are essential in processing seed storage proteins and for mediating the susceptible response of toxin-induced cell death.  go_component lytic vacuole|GO:0000323|10417725|IDA  go_process proteolysis|GO:0006508||ISS  go_process vacuolar protein processing|GO:0006624|8589932|ISS  go_function cysteine-type endopeptidase activity|GO:0004197|16043487|IDA  go_function cysteine-type endopeptidase activity|GO:0004197||ISS  product GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME); cysteine-type endopeptidase  note GAMMA VACUOLAR PROCESSING ENZYME (GAMMA-VPE); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis, vacuolar protein processing; LOCATED IN: lytic vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C13, legumain (InterPro:IPR001096); BEST Arabidopsis thaliana protein match is: ALPHA-VPE (alpha-vacuolar processing enzyme); cysteine-type endopeptidase (TAIR:AT2G25940.1); Has 599 Blast hits to 597 proteins in 187 species: Archae - 4; Bacteria - 2; Metazoa - 232; Fungi - 79; Plants - 186; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT4G32940.1p  transcript_id AT4G32940.1  protein_id AT4G32940.1p  transcript_id AT4G32940.1  
At4g32950	chr4:015905822	0.0	C/15905822-15906010,15905482-15905736,15905237-15905354,15904915-15905138,15904444-15904638	AT4G32950.1  CDS  gene_syn F26P21.70, F26P21_70  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: catalytic/ protein serine/threonine phosphatase (TAIR:AT5G26010.1); Has 3990 Blast hits to 3978 proteins in 252 species: Archae - 0; Bacteria - 51; Metazoa - 1209; Fungi - 485; Plants - 1297; Viruses - 5; Other Eukaryotes - 943 (source: NCBI BLink).  protein_id AT4G32950.1p  transcript_id AT4G32950.1  protein_id AT4G32950.1p  transcript_id AT4G32950.1  
At4g32960	chr4:015909875	0.0	C/15909875-15910141,15909245-15909403,15908785-15909153	AT4G32960.1  CDS  gene_syn F26P21.80, F26P21_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32970.1); Has 78 Blast hits to 78 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 55; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G32960.1p  transcript_id AT4G32960.1  protein_id AT4G32960.1p  transcript_id AT4G32960.1  
At4g32970	chr4:015914046	0.0	C/15914046-15914300,15913685-15913843,15913299-15913592,15913109-15913222,15912787-15912860,15912570-15912621,15912195-15912241,15911970-15912069,15911697-15911888,15911397-15911520,15910800-15911243,15910345-15910742	AT4G32970.1  CDS  gene_syn F26P21.90, F26P21_90  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32960.1); Has 415 Blast hits to 365 proteins in 67 species: Archae - 0; Bacteria - 12; Metazoa - 168; Fungi - 11; Plants - 126; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT4G32970.1p  transcript_id AT4G32970.1  protein_id AT4G32970.1p  transcript_id AT4G32970.1  
At4g32980	chr4:015916025	0.0	C/15916025-15916873,15915589-15915932,15915436-15915496,15914865-15915032	AT4G32980.1  CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX GENE 1, ATH1, F26P21.100, F26P21_100  gene ATH1  function Encodes transcription factor involved in photomorphogenesis. Regulates gibberellin biosynthesis. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed at low levels in developing stamens. Increased levels of ATH1 severely delay flowering in the C24 accession. Most remarkably, ectopically expressed ATH1 hardly had an effect on flowering time in the Col-0 and Ler accessions. ATH1 physically interacts with STM, BP and KNAT6 and enhances the shoot apical meristem defect of some of these genes suggesting a role in SAM maintenance. Nuclear localization is dependent upon interaction with STM.  go_component nucleus|GO:0005634|19175771|IDA  go_process negative regulation of cell proliferation|GO:0008285|18757555|IMP  go_process photomorphogenesis|GO:0009640|7696878|IDA  go_process meristem maintenance|GO:0010073|19175771|IGI  go_process floral organ abscission|GO:0010227|18757555|IMP  go_process vegetative to reproductive phase transition|GO:0010228|17908157|IMP  go_process regulation of gibberellin biosynthetic process|GO:0010371|11986761|IMP  go_function DNA binding|GO:0003677|7696878|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|7696878|ISS  go_function sequence-specific DNA binding|GO:0043565|16497162|IDA  product ATH1 (ARABIDOPSIS THALIANA HOMEOBOX GENE 1); DNA binding / sequence-specific DNA binding / transcription factor  note ARABIDOPSIS THALIANA HOMEOBOX GENE 1 (ATH1); FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding, DNA binding; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BLH1 (BEL1-LIKE HOMEODOMAIN 1); DNA binding / protein heterodimerization/ protein homodimerization/ transcription factor (TAIR:AT2G35940.3); Has 4115 Blast hits to 4115 proteins in 263 species: Archae - 0; Bacteria - 0; Metazoa - 1822; Fungi - 169; Plants - 2023; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT4G32980.1p  transcript_id AT4G32980.1  protein_id AT4G32980.1p  transcript_id AT4G32980.1  
At4g32990	chr4:015920230	0.0	W/15920230-15920409,15920534-15920620,15920744-15920968,15921062-15921126,15921252-15921317,15921407-15921478,15921677-15921739,15921979-15922048,15922306-15922389,15922584-15922658	AT4G32990.1  CDS  gene_syn F26P21.110, F26P21_110  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product nucleotide binding  note nucleotide binding; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: heterotrimeric G-protein complex; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: emb1345 (embryo defective 1345); nucleotide binding (TAIR:AT2G26060.1); Has 37137 Blast hits to 18365 proteins in 544 species: Archae - 30; Bacteria - 4344; Metazoa - 16519; Fungi - 7486; Plants - 3496; Viruses - 0; Other Eukaryotes - 5262 (source: NCBI BLink).  protein_id AT4G32990.1p  transcript_id AT4G32990.1  protein_id AT4G32990.1p  transcript_id AT4G32990.1  
At4g33000	chr4:015924349	0.0	W/15924349-15924396,15924930-15925098,15925247-15925329,15925520-15925579,15925657-15925765,15925838-15925890,15925960-15926040,15926141-15926253,15926344-15926398	AT4G33000.1  CDS  gene_syn ATCBL10, CALCINEURIN B-LIKE 10, CBL10, F26P21.120, F26P21_120, SCABP8, SOS3-LIKE  gene CBL10  function Encodes a member of the calcineurin B-like calcium sensor gene family. Mediates salt tolerance by regulating ion homeostasis in Arabidopsis.  go_component cytoplasm|GO:0005737|17449811|IDA  go_component plasma membrane|GO:0005886|17449811|IDA  go_component plant-type vacuole membrane|GO:0009705|17825054|IDA  go_process hyperosmotic salinity response|GO:0042538|17825054|IMP  go_process ion homeostasis|GO:0050801|17825054|IMP  go_function calcium ion binding|GO:0005509|11230129|ISS  go_function calcium ion binding|GO:0005509|17449811|IDA  go_function calcium ion binding|GO:0005509||ISS  product CBL10 (CALCINEURIN B-LIKE 10); calcium ion binding  note CALCINEURIN B-LIKE 10 (CBL10); FUNCTIONS IN: calcium ion binding; INVOLVED IN: hyperosmotic salinity response, ion homeostasis; LOCATED IN: plant-type vacuole membrane, plasma membrane, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), Recoverin (InterPro:IPR001125), Calcineurin B protein (InterPro:IPR015757), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: ATCBL3 (ARABIDOPSIS THALIANA CALCINEURIN B-LIKE 3); calcium ion binding (TAIR:AT4G26570.1); Has 6075 Blast hits to 6065 proteins in 671 species: Archae - 0; Bacteria - 10; Metazoa - 3124; Fungi - 936; Plants - 1272; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink).  protein_id AT4G33000.1p  transcript_id AT4G33000.1  protein_id AT4G33000.1p  transcript_id AT4G33000.1  
At4g33000	chr4:015924349	0.0	W/15924349-15924396,15924930-15925098,15925247-15925329,15925520-15925579,15925657-15925765,15925838-15925890,15925960-15926052	AT4G33000.3  CDS  gene_syn ATCBL10, CALCINEURIN B-LIKE 10, CBL10, F26P21.120, F26P21_120, SCABP8, SOS3-LIKE  gene CBL10  function Encodes a member of the calcineurin B-like calcium sensor gene family. Mediates salt tolerance by regulating ion homeostasis in Arabidopsis.  go_component cytoplasm|GO:0005737|17449811|IDA  go_component plasma membrane|GO:0005886|17449811|IDA  go_component plant-type vacuole membrane|GO:0009705|17825054|IDA  go_process hyperosmotic salinity response|GO:0042538|17825054|IMP  go_process ion homeostasis|GO:0050801|17825054|IMP  go_function calcium ion binding|GO:0005509|11230129|ISS  go_function calcium ion binding|GO:0005509|17449811|IDA  go_function calcium ion binding|GO:0005509||ISS  product CBL10 (CALCINEURIN B-LIKE 10); calcium ion binding  note CALCINEURIN B-LIKE 10 (CBL10); FUNCTIONS IN: calcium ion binding; INVOLVED IN: hyperosmotic salinity response, ion homeostasis; LOCATED IN: plant-type vacuole membrane, plasma membrane, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Recoverin (InterPro:IPR001125), EF-HAND 2 (InterPro:IPR018249), Calcineurin B protein (InterPro:IPR015757), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: ATCBL3 (ARABIDOPSIS THALIANA CALCINEURIN B-LIKE 3); calcium ion binding (TAIR:AT4G26570.1); Has 3104 Blast hits to 3102 proteins in 224 species: Archae - 0; Bacteria - 4; Metazoa - 2199; Fungi - 216; Plants - 321; Viruses - 0; Other Eukaryotes - 364 (source: NCBI BLink).  protein_id AT4G33000.3p  transcript_id AT4G33000.3  protein_id AT4G33000.3p  transcript_id AT4G33000.3  
At4g33000	chr4:015924821	0.0	W/15924821-15924838,15924930-15925098,15925247-15925329,15925520-15925579,15925657-15925765,15925838-15925890,15925960-15926040,15926141-15926253,15926344-15926398	AT4G33000.2  CDS  gene_syn ATCBL10, CALCINEURIN B-LIKE 10, CBL10, F26P21.120, F26P21_120, SCABP8, SOS3-LIKE  gene CBL10  function Encodes a member of the calcineurin B-like calcium sensor gene family. Mediates salt tolerance by regulating ion homeostasis in Arabidopsis.  go_component cytoplasm|GO:0005737|17449811|IDA  go_component plasma membrane|GO:0005886|17449811|IDA  go_component plant-type vacuole membrane|GO:0009705|17825054|IDA  go_process hyperosmotic salinity response|GO:0042538|17825054|IMP  go_process ion homeostasis|GO:0050801|17825054|IMP  go_function calcium ion binding|GO:0005509|11230129|ISS  go_function calcium ion binding|GO:0005509|17449811|IDA  go_function calcium ion binding|GO:0005509||ISS  product CBL10 (CALCINEURIN B-LIKE 10); calcium ion binding  note CALCINEURIN B-LIKE 10 (CBL10); FUNCTIONS IN: calcium ion binding; INVOLVED IN: hyperosmotic salinity response, ion homeostasis; LOCATED IN: plant-type vacuole membrane, plasma membrane, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), Recoverin (InterPro:IPR001125), Calcineurin B protein (InterPro:IPR015757), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: ATCBL3 (ARABIDOPSIS THALIANA CALCINEURIN B-LIKE 3); calcium ion binding (TAIR:AT4G26570.1); Has 6075 Blast hits to 6065 proteins in 671 species: Archae - 0; Bacteria - 10; Metazoa - 3124; Fungi - 936; Plants - 1272; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink).  protein_id AT4G33000.2p  transcript_id AT4G33000.2  protein_id AT4G33000.2p  transcript_id AT4G33000.2  
At4g33010	chr4:015929936	0.0	C/15929936-15931150,15929571-15929816,15929405-15929482,15929218-15929318,15928932-15929127,15928726-15928851,15928328-15928627,15928095-15928247,15927815-15928003,15927651-15927728,15927444-15927569,15927258-15927356,15927043-15927160,15926852-15926940	AT4G33010.1  CDS  gene_syn Arabidopsis thaliana glycine decarboxylase P-protein 1, AtGLDP1, F4I10.7  gene AtGLDP1  go_component mitochondrion|GO:0005739|18385124|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function catalytic activity|GO:0003824||IEA  go_function glycine dehydrogenase (decarboxylating) activity|GO:0004375||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component glycine cleavage complex|GO:0005960||ISS  go_process glycine catabolic process|GO:0006546|17496108|IMP  go_process glycine decarboxylation via glycine cleavage system|GO:0019464||ISS  go_function glycine dehydrogenase (decarboxylating) activity|GO:0004375||ISS  product AtGLDP1 (Arabidopsis thaliana glycine decarboxylase P-protein 1); catalytic/ glycine dehydrogenase (decarboxylating)/ pyridoxal phosphate binding  note Arabidopsis thaliana glycine decarboxylase P-protein 1 (AtGLDP1); FUNCTIONS IN: glycine dehydrogenase (decarboxylating) activity, pyridoxal phosphate binding, catalytic activity; INVOLVED IN: glycine catabolic process, glycine decarboxylation via glycine cleavage system; LOCATED IN: mitochondrion, apoplast, glycine cleavage complex, chloroplast, chloroplast envelope; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Glycine cleavage system P-protein (InterPro:IPR003437), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: AtGLDP2 (Arabidopsis thaliana glycine decarboxylase P-protein 2); ATP binding / glycine dehydrogenase (decarboxylating) (TAIR:AT2G26080.1); Has 9787 Blast hits to 8954 proteins in 1113 species: Archae - 131; Bacteria - 2880; Metazoa - 122; Fungi - 158; Plants - 73; Viruses - 0; Other Eukaryotes - 6423 (source: NCBI BLink).  protein_id AT4G33010.1p  transcript_id AT4G33010.1  protein_id AT4G33010.1p  transcript_id AT4G33010.1  
At4g33010	chr4:015929936	0.0	C/15929936-15931150,15929571-15929816,15929405-15929482,15929218-15929318,15928932-15929127,15928726-15928851,15928328-15928627,15928095-15928247,15927815-15928003,15927651-15927728,15927444-15927569,15927258-15927356,15927133-15927156	AT4G33010.2  CDS  gene_syn Arabidopsis thaliana glycine decarboxylase P-protein 1, AtGLDP1, F4I10.7  gene AtGLDP1  go_component mitochondrion|GO:0005739|18385124|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function catalytic activity|GO:0003824||IEA  go_function glycine dehydrogenase (decarboxylating) activity|GO:0004375||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component glycine cleavage complex|GO:0005960||ISS  go_process glycine catabolic process|GO:0006546|17496108|IMP  go_process glycine decarboxylation via glycine cleavage system|GO:0019464||ISS  go_function glycine dehydrogenase (decarboxylating) activity|GO:0004375||ISS  product AtGLDP1 (Arabidopsis thaliana glycine decarboxylase P-protein 1); catalytic/ glycine dehydrogenase (decarboxylating)/ pyridoxal phosphate binding  note Arabidopsis thaliana glycine decarboxylase P-protein 1 (AtGLDP1); FUNCTIONS IN: glycine dehydrogenase (decarboxylating) activity, pyridoxal phosphate binding, catalytic activity; INVOLVED IN: glycine catabolic process, glycine decarboxylation via glycine cleavage system; LOCATED IN: mitochondrion, apoplast, glycine cleavage complex, chloroplast; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Glycine cleavage system P-protein (InterPro:IPR003437), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: AtGLDP2 (Arabidopsis thaliana glycine decarboxylase P-protein 2); ATP binding / glycine dehydrogenase (decarboxylating) (TAIR:AT2G26080.1); Has 9622 Blast hits to 8824 proteins in 1115 species: Archae - 131; Bacteria - 2860; Metazoa - 121; Fungi - 162; Plants - 77; Viruses - 0; Other Eukaryotes - 6271 (source: NCBI BLink).  protein_id AT4G33010.2p  transcript_id AT4G33010.2  protein_id AT4G33010.2p  transcript_id AT4G33010.2  
At4g33020	chr4:015933689	0.0	C/15933689-15934267,15932603-15933058	AT4G33020.1  CDS  gene_syn ATZIP9, F4I10.1, ZIP9  gene ZIP9  function member of Fe(II) transporter isolog family  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|ISS  go_process cation transport|GO:0006812||ISS  go_process response to zinc ion|GO:0010043|14690510|IEP  go_function cation transmembrane transporter activity|GO:0008324|11500563|ISS  go_function cation transmembrane transporter activity|GO:0008324||ISS  go_function metal ion transmembrane transporter activity|GO:0046873||ISS  product ZIP9; cation transmembrane transporter/ metal ion transmembrane transporter  note ZIP9; FUNCTIONS IN: cation transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: response to zinc ion, cation transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal and plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: IRT3; cation transmembrane transporter/ metal ion transmembrane transporter (TAIR:AT1G60960.1); Has 1266 Blast hits to 1257 proteins in 194 species: Archae - 0; Bacteria - 67; Metazoa - 425; Fungi - 312; Plants - 318; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).  protein_id AT4G33020.1p  transcript_id AT4G33020.1  protein_id AT4G33020.1p  transcript_id AT4G33020.1  
At4g33030	chr4:015936051	0.0	W/15936051-15937082,15937165-15937566	AT4G33030.1  CDS  gene_syn F4I10.6, SQD1, UDP-SULFOQUINOVOSE SYNTHASE  gene SQD1  function involved in sulfolipid biosynthesis  go_component chloroplast|GO:0009507|9465123|IDA  go_process glycolipid biosynthetic process|GO:0009247|11073956|IDA  go_process cellular response to phosphate starvation|GO:0016036|17400898|IEP  go_process cellular response to phosphate starvation|GO:0016036|9465123|IMP  go_process sulfolipid biosynthetic process|GO:0046506|11073956|IDA  go_function sulfotransferase activity|GO:0008146|11073956|IDA  go_function UDPsulfoquinovose synthase activity|GO:0046507|11073956|IDA  product SQD1; UDPsulfoquinovose synthase/ sulfotransferase  note SQD1; FUNCTIONS IN: UDPsulfoquinovose synthase activity, sulfotransferase activity; INVOLVED IN: cellular response to phosphate starvation, sulfolipid biosynthetic process, glycolipid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); Has 6885 Blast hits to 6885 proteins in 1304 species: Archae - 175; Bacteria - 4431; Metazoa - 263; Fungi - 62; Plants - 289; Viruses - 5; Other Eukaryotes - 1660 (source: NCBI BLink).  protein_id AT4G33030.1p  transcript_id AT4G33030.1  protein_id AT4G33030.1p  transcript_id AT4G33030.1  
At4g33040	chr4:015940779	0.0	C/15940779-15941213	AT4G33040.1  CDS  gene_syn F4I10.5  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  go_component cellular_component|GO:0005575||ND  product glutaredoxin family protein  note glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutaredoxin active site (InterPro:IPR011767), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin family protein (TAIR:AT5G11930.1); Has 731 Blast hits to 730 proteins in 125 species: Archae - 0; Bacteria - 12; Metazoa - 224; Fungi - 76; Plants - 401; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT4G33040.1p  transcript_id AT4G33040.1  protein_id AT4G33040.1p  transcript_id AT4G33040.1  
At4g33050	chr4:015946327	0.0	C/15946327-15946736,15946124-15946238,15945750-15946018,15945574-15945661,15945235-15945477	AT4G33050.1  CDS  gene_syn EDA39, F4I10.2, embryo sac development arrest 39  gene EDA39  go_component cellular_component|GO:0005575||ND  go_process polar nucleus fusion|GO:0010197|15634699|IMP  go_process response to chitin|GO:0010200|17722694|IEP  go_function calmodulin binding|GO:0005516||ISS  product EDA39 (embryo sac development arrest 39); calmodulin binding  note embryo sac development arrest 39 (EDA39); FUNCTIONS IN: calmodulin binding; INVOLVED IN: polar nucleus fusion, response to chitin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: calmodulin-binding family protein (TAIR:AT2G26190.1); Has 175 Blast hits to 137 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 78; Plants - 94; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G33050.1p  transcript_id AT4G33050.1  protein_id AT4G33050.1p  transcript_id AT4G33050.1  
At4g33050	chr4:015946327	0.0	C/15946327-15946736,15946124-15946238,15945750-15946018,15945574-15945661,15945247-15945477,15945060-15945161,15944604-15944969	AT4G33050.2  CDS  gene_syn EDA39, F4I10.2, embryo sac development arrest 39  gene EDA39  go_component cellular_component|GO:0005575||ND  go_process polar nucleus fusion|GO:0010197|15634699|IMP  go_process response to chitin|GO:0010200|17722694|IEP  go_function calmodulin binding|GO:0005516||ISS  product EDA39 (embryo sac development arrest 39); calmodulin binding  note embryo sac development arrest 39 (EDA39); FUNCTIONS IN: calmodulin binding; INVOLVED IN: polar nucleus fusion, response to chitin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: calmodulin-binding family protein (TAIR:AT2G26190.1); Has 224 Blast hits to 148 proteins in 38 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 83; Plants - 134; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G33050.2p  transcript_id AT4G33050.2  protein_id AT4G33050.2p  transcript_id AT4G33050.2  
At4g33050	chr4:015946327	0.0	C/15946327-15946736,15946124-15946238,15945953-15946018,15945750-15945838,15945574-15945661,15945235-15945477	AT4G33050.4  CDS  gene_syn EDA39, F4I10.2, embryo sac development arrest 39  gene EDA39  go_component cellular_component|GO:0005575||ND  go_process polar nucleus fusion|GO:0010197|15634699|IMP  go_process response to chitin|GO:0010200|17722694|IEP  go_function calmodulin binding|GO:0005516||ISS  product EDA39 (embryo sac development arrest 39); calmodulin binding  note embryo sac development arrest 39 (EDA39); FUNCTIONS IN: calmodulin binding; INVOLVED IN: polar nucleus fusion, response to chitin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: calmodulin-binding family protein (TAIR:AT2G26190.1); Has 175 Blast hits to 137 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 78; Plants - 94; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G33050.4p  transcript_id AT4G33050.4  protein_id AT4G33050.4p  transcript_id AT4G33050.4  
At4g33050	chr4:015946327	0.0	C/15946327-15946736,15946124-15946238,15945953-15946018,15945750-15945838,15945574-15945661,15945247-15945477,15945060-15945161,15944604-15944969	AT4G33050.3  CDS  gene_syn EDA39, F4I10.2, embryo sac development arrest 39  gene EDA39  go_component cellular_component|GO:0005575||ND  go_process polar nucleus fusion|GO:0010197|15634699|IMP  go_process response to chitin|GO:0010200|17722694|IEP  go_function calmodulin binding|GO:0005516||ISS  product EDA39 (embryo sac development arrest 39); calmodulin binding  note embryo sac development arrest 39 (EDA39); FUNCTIONS IN: calmodulin binding; INVOLVED IN: polar nucleus fusion, response to chitin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: calmodulin-binding family protein (TAIR:AT2G26190.1); Has 224 Blast hits to 148 proteins in 38 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 83; Plants - 134; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G33050.3p  transcript_id AT4G33050.3  protein_id AT4G33050.3p  transcript_id AT4G33050.3  
At4g33060	chr4:015948535	0.0	W/15948535-15948754,15948873-15949051,15949155-15949256,15949399-15949499,15949596-15949737,15950053-15950278,15950556-15950595,15951018-15951213,15951440-15951607,15951814-15951954	AT4G33060.1  CDS  gene_syn F4I10.3  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein  note peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: CYP71 (CYCLOPHILIN71); chromatin binding / histone binding / peptidyl-prolyl cis-trans isomerase (TAIR:AT3G44600.1); Has 18511 Blast hits to 16644 proteins in 1616 species: Archae - 90; Bacteria - 4190; Metazoa - 5100; Fungi - 1622; Plants - 926; Viruses - 34; Other Eukaryotes - 6549 (source: NCBI BLink).  protein_id AT4G33060.1p  transcript_id AT4G33060.1  protein_id AT4G33060.1p  transcript_id AT4G33060.1  
At4g33070	chr4:015954146	0.0	C/15954146-15954676,15953890-15954053,15953168-15953818,15952771-15953077,15952519-15952689	AT4G33070.1  CDS  gene_syn F4I10.4  go_component membrane|GO:0016020|17432890|IDA  go_function magnesium ion binding|GO:0000287||IEA  go_function catalytic activity|GO:0003824||IEA  go_function transferase activity|GO:0016740||IEA  go_function carboxy-lyase activity|GO:0016831||IEA  go_function thiamin pyrophosphate binding|GO:0030976||IEA  go_function pyruvate decarboxylase activity|GO:0004737||ISS  product pyruvate decarboxylase, putative  note pyruvate decarboxylase, putative; FUNCTIONS IN: in 6 functions; LOCATED IN: membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: TPP-binding enzymes, conserved site (InterPro:IPR000399), Thiamine pyrophosphate enzyme, central region (InterPro:IPR012000), Pyruvate decarboxylase/indolepyruvate decarboxylase (InterPro:IPR012110), Thiamine pyrophosphate enzyme, N-terminal TPP binding region (InterPro:IPR012001), Thiamine pyrophosphate enzyme, C-terminal TPP-binding (InterPro:IPR011766); BEST Arabidopsis thaliana protein match is: pyruvate decarboxylase, putative (TAIR:AT5G01320.1); Has 13782 Blast hits to 13739 proteins in 1425 species: Archae - 236; Bacteria - 7155; Metazoa - 152; Fungi - 511; Plants - 438; Viruses - 2; Other Eukaryotes - 5288 (source: NCBI BLink).  protein_id AT4G33070.1p  transcript_id AT4G33070.1  protein_id AT4G33070.1p  transcript_id AT4G33070.1  
At4g33080	chr4:015960146	0.0	W/15960146-15960291,15960557-15960731,15960880-15960963,15961093-15961334,15961421-15961664,15961947-15962026,15962241-15962325,15962749-15962883,15962972-15963085,15963488-15963535,15963731-15963815,15963990-15964025,15964211-15964296	AT4G33080.1  CDS  gene_syn F4I10.10, F4I10_10  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase, C-terminal (InterPro:IPR017892), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT2G19400.1); Has 78886 Blast hits to 77157 proteins in 1855 species: Archae - 56; Bacteria - 7391; Metazoa - 32768; Fungi - 7799; Plants - 14685; Viruses - 369; Other Eukaryotes - 15818 (source: NCBI BLink).  protein_id AT4G33080.1p  transcript_id AT4G33080.1  protein_id AT4G33080.1p  transcript_id AT4G33080.1  
At4g33080	chr4:015960146	0.0	W/15960146-15960291,15960557-15960731,15960880-15960963,15961093-15961334,15961421-15961664,15961947-15962026,15962241-15962325,15962749-15962883,15962972-15963085,15963488-15963535,15963731-15963815,15964211-15964296	AT4G33080.2  CDS  gene_syn F4I10.10, F4I10_10  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase, C-terminal (InterPro:IPR017892), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT2G19400.1); Has 79472 Blast hits to 77727 proteins in 1859 species: Archae - 56; Bacteria - 7475; Metazoa - 32959; Fungi - 7882; Plants - 14799; Viruses - 366; Other Eukaryotes - 15935 (source: NCBI BLink).  protein_id AT4G33080.2p  transcript_id AT4G33080.2  protein_id AT4G33080.2p  transcript_id AT4G33080.2  
At4g33090	chr4:015970203	0.0	C/15970203-15970418,15969737-15969882,15969549-15969651,15969248-15969434,15969076-15969169,15968821-15968974,15968626-15968730,15968427-15968543,15968197-15968310,15967874-15968056,15967476-15967779,15967270-15967391,15967089-15967186,15966815-15966992,15966611-15966725,15966449-15966516,15966191-15966346,15965915-15966094	AT4G33090.1  CDS  gene_syn AMINOPEPTIDASE M1, APM1, ATAPM1, F4I10.20, F4I10_20  gene APM1  function encodes an aminopeptidase, a ortholog of mouse microsomal AP (EC 3.4.11.2).  go_component plasma membrane|GO:0005886|17644812|IDA  go_component plasma membrane|GO:0005886|11891249|IDA  go_process auxin polar transport|GO:0009926|11891249|TAS  go_function aminopeptidase activity|GO:0004177|11891249|IDA  product APM1 (AMINOPEPTIDASE M1); aminopeptidase  note AMINOPEPTIDASE M1 (APM1); FUNCTIONS IN: aminopeptidase activity; INVOLVED IN: auxin polar transport; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M1, puromycin-sensitive aminopeptidase (InterPro:IPR015568), Peptidase M1, membrane alanine aminopeptidase (InterPro:IPR001930), Peptidase M1, membrane alanine aminopeptidase, N-terminal (InterPro:IPR014782); BEST Arabidopsis thaliana protein match is: peptidase M1 family protein (TAIR:AT5G13520.1); Has 6577 Blast hits to 6490 proteins in 1126 species: Archae - 83; Bacteria - 2506; Metazoa - 1987; Fungi - 325; Plants - 105; Viruses - 0; Other Eukaryotes - 1571 (source: NCBI BLink).  protein_id AT4G33090.1p  transcript_id AT4G33090.1  protein_id AT4G33090.1p  transcript_id AT4G33090.1  
At4g33100	chr4:015971701	0.0	W/15971701-15971795,15972042-15972126,15972244-15972342	AT4G33100.1  CDS  gene_syn F4I10.30, F4I10_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial distribution and morphology family 35/apoptosis (InterPro:IPR007918); Has 160 Blast hits to 160 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 46; Plants - 13; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G33100.1p  transcript_id AT4G33100.1  protein_id AT4G33100.1p  transcript_id AT4G33100.1  
At4g33110	chr4:015974345	0.0	C/15974345-15974531,15973477-15973810,15973295-15973394,15973087-15973197,15972923-15973006,15972784-15972842,15972497-15972689	AT4G33110.1  CDS  gene_syn F4I10.40, F4I10_40  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process lipid biosynthetic process|GO:0008610||IEA  go_function cyclopropane-fatty-acyl-phospholipid synthase activity|GO:0008825||IEA  go_function (S)-coclaurine-N-methyltransferase activity|GO:0030794||ISS  product coclaurine N-methyltransferase, putative  note coclaurine N-methyltransferase, putative; FUNCTIONS IN: cyclopropane-fatty-acyl-phospholipid synthase activity, (S)-coclaurine-N-methyltransferase activity; INVOLVED IN: lipid biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Cyclopropane-fatty-acyl-phospholipid synthase (InterPro:IPR003333); BEST Arabidopsis thaliana protein match is: coclaurine N-methyltransferase, putative (TAIR:AT4G33120.1); Has 6032 Blast hits to 6030 proteins in 921 species: Archae - 32; Bacteria - 2504; Metazoa - 56; Fungi - 238; Plants - 239; Viruses - 0; Other Eukaryotes - 2963 (source: NCBI BLink).  protein_id AT4G33110.1p  transcript_id AT4G33110.1  protein_id AT4G33110.1p  transcript_id AT4G33110.1  
At4g33120	chr4:015977869	0.0	C/15977869-15978055,15976590-15976923,15976386-15976485,15976189-15976299,15975999-15976082,15975861-15975919,15975577-15975769	AT4G33120.1  CDS  gene_syn F4I10.50, F4I10_50  go_process lipid biosynthetic process|GO:0008610||IEA  go_function cyclopropane-fatty-acyl-phospholipid synthase activity|GO:0008825||IEA  go_function (S)-coclaurine-N-methyltransferase activity|GO:0030794||ISS  product coclaurine N-methyltransferase, putative  note coclaurine N-methyltransferase, putative; FUNCTIONS IN: cyclopropane-fatty-acyl-phospholipid synthase activity, (S)-coclaurine-N-methyltransferase activity; INVOLVED IN: lipid biosynthetic process; CONTAINS InterPro DOMAIN/s: Cyclopropane-fatty-acyl-phospholipid synthase (InterPro:IPR003333); BEST Arabidopsis thaliana protein match is: coclaurine N-methyltransferase, putative (TAIR:AT4G33110.1); Has 5982 Blast hits to 5978 proteins in 904 species: Archae - 32; Bacteria - 2580; Metazoa - 59; Fungi - 244; Plants - 209; Viruses - 0; Other Eukaryotes - 2858 (source: NCBI BLink).  protein_id AT4G33120.1p  transcript_id AT4G33120.1  protein_id AT4G33120.1p  transcript_id AT4G33120.1  
At4g33130	chr4:015980540	0.0	C/15980540-15980655,15980347-15980443,15980117-15980197,15979862-15979978,15979579-15979770,15979437-15979502	AT4G33130.1  CDS  gene_syn F4I10.60, F4I10_60  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT3G13000.2); Has 77 Blast hits to 77 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G33130.1p  transcript_id AT4G33130.1  protein_id AT4G33130.1p  transcript_id AT4G33130.1  
At4g33130	chr4:015980540	0.0	C/15980540-15980655,15980347-15980443,15980117-15980197,15979862-15979978,15979583-15979770,15979499-15979502	AT4G33130.3  CDS  gene_syn F4I10.60, F4I10_60  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16750.1); Has 95 Blast hits to 95 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G33130.3p  transcript_id AT4G33130.3  protein_id AT4G33130.3p  transcript_id AT4G33130.3  
At4g33130	chr4:015980540	0.0	C/15980540-15980655,15980347-15980443,15980117-15980197,15979862-15979978,15979751-15979783	AT4G33130.2  CDS  gene_syn F4I10.60, F4I10_60  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; Has 15 Blast hits to 15 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G33130.2p  transcript_id AT4G33130.2  protein_id AT4G33130.2p  transcript_id AT4G33130.2  
At4g33140	chr4:015981648	0.0	W/15981648-15982119,15982641-15982738,15983294-15983318,15983451-15983571,15983677-15983811,15983925-15984135	AT4G33140.1  CDS  gene_syn F4I10.70, F4I10_70  product unknown protein  note unknown protein; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 138 Blast hits to 138 proteins in 40 species: Archae - 0; Bacteria - 47; Metazoa - 0; Fungi - 8; Plants - 25; Viruses - 2; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT4G33140.1p  transcript_id AT4G33140.1  protein_id AT4G33140.1p  transcript_id AT4G33140.1  
At4g33145	chr4:015984744	0.0	C/15984744-15984938	AT4G33145.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G33145.1p  transcript_id AT4G33145.1  protein_id AT4G33145.1p  transcript_id AT4G33145.1  
At4g33150	chr4:015987867	0.0	C/15987867-15988055,15987692-15987772,15987536-15987601,15987266-15987383,15987013-15987142,15986832-15986911,15986577-15986735,15986264-15986495,15986059-15986167,15985797-15985958,15985633-15985702,15985479-15985531	AT4G33150.3  CDS  gene_syn F4I10.80, F4I10_80, LKR, LKR/SDH, LYSINE-KETOGLUTARATE REDUCTASE/SACCHAROPINE DEHYDROGENASE, SACCHAROPINE DEHYDROGENASE, SDH  product lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme  note lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Saccharopine dehydrogenase (InterPro:IPR005097), NAD(P)-binding (InterPro:IPR016040).  protein_id AT4G33150.3p  transcript_id AT4G33150.3  protein_id AT4G33150.3p  transcript_id AT4G33150.3  
At4g33150	chr4:015990791	0.0	C/15990791-15991069,15990624-15990710,15990416-15990545,15990159-15990332,15989996-15990078,15989811-15989927,15989642-15989717,15989338-15989509,15989158-15989254,15988901-15989067,15988752-15988812,15988421-15988561,15987867-15988217,15987692-15987772,15987536-15987601,15987266-15987383,15987013-15987142,15986832-15986911,15986577-15986735,15986264-15986495,15986059-15986167,15985797-15985958,15985633-15985702,15985479-15985531	AT4G33150.1  CDS  gene_syn F4I10.80, F4I10_80, LKR, LKR/SDH, LYSINE-KETOGLUTARATE REDUCTASE/SACCHAROPINE DEHYDROGENASE, SACCHAROPINE DEHYDROGENASE, SDH  product lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme  note lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alanine dehydrogenase/PNT, C-terminal (InterPro:IPR007698), Saccharopine dehydrogenase (InterPro:IPR005097), Alanine dehydrogenase/PNT, N-terminal (InterPro:IPR007886), NAD(P)-binding (InterPro:IPR016040), LOR/SDH bifunctional enzyme conserved region (InterPro:IPR007545); Has 1541 Blast hits to 1441 proteins in 260 species: Archae - 42; Bacteria - 298; Metazoa - 190; Fungi - 215; Plants - 43; Viruses - 0; Other Eukaryotes - 753 (source: NCBI BLink).  protein_id AT4G33150.1p  transcript_id AT4G33150.1  protein_id AT4G33150.1p  transcript_id AT4G33150.1  
At4g33150	chr4:015990791	0.0	C/15990791-15991069,15990624-15990710,15990416-15990545,15990159-15990332,15989996-15990078,15989811-15989927,15989642-15989717,15989338-15989509,15989158-15989254,15988901-15989067,15988752-15988812,15988421-15988561,15987867-15988217,15987692-15987772,15987536-15987601,15987266-15987383,15987013-15987142,15986832-15986911,15986577-15986735,15986264-15986495,15986059-15986167,15985797-15985958,15985633-15985702,15985479-15985531	AT4G33150.2  CDS  gene_syn F4I10.80, F4I10_80, LKR, LKR/SDH, LYSINE-KETOGLUTARATE REDUCTASE/SACCHAROPINE DEHYDROGENASE, SACCHAROPINE DEHYDROGENASE, SDH  product lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme  note lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alanine dehydrogenase/PNT, C-terminal (InterPro:IPR007698), Saccharopine dehydrogenase (InterPro:IPR005097), Alanine dehydrogenase/PNT, N-terminal (InterPro:IPR007886), NAD(P)-binding (InterPro:IPR016040), LOR/SDH bifunctional enzyme conserved region (InterPro:IPR007545); Has 1541 Blast hits to 1441 proteins in 260 species: Archae - 42; Bacteria - 298; Metazoa - 190; Fungi - 215; Plants - 43; Viruses - 0; Other Eukaryotes - 753 (source: NCBI BLink).  protein_id AT4G33150.2p  transcript_id AT4G33150.2  protein_id AT4G33150.2p  transcript_id AT4G33150.2  
At4g33160	chr4:015994160	0.0	W/15994160-15995533	AT4G33160.1  CDS  gene_syn F4I10.90, F4I10_90  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product ubiquitin-protein ligase  note ubiquitin-protein ligase; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G27340.1); Has 260 Blast hits to 258 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 260; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G33160.1p  transcript_id AT4G33160.1  protein_id AT4G33160.1p  transcript_id AT4G33160.1  
At4g33170	chr4:015995701	0.0	C/15995701-15998673	AT4G33170.1  CDS  gene_syn F4I10.100, F4I10_100  go_component chloroplast|GO:0009507||IEA  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G09950.1); Has 19438 Blast hits to 5050 proteins in 160 species: Archae - 0; Bacteria - 8; Metazoa - 91; Fungi - 34; Plants - 19030; Viruses - 0; Other Eukaryotes - 275 (source: NCBI BLink).  protein_id AT4G33170.1p  transcript_id AT4G33170.1  protein_id AT4G33170.1p  transcript_id AT4G33170.1  
At4g33180	chr4:016000282	0.0	W/16000282-16000608,16001121-16001438,16001575-16001670,16001776-16001843,16001941-16002055	AT4G33180.1  CDS  gene_syn AT4G33190, F4I10.110, F4I10_110  go_function catalytic activity|GO:0003824||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: catalytic activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT5G21950.1); Has 5761 Blast hits to 5757 proteins in 830 species: Archae - 45; Bacteria - 3428; Metazoa - 310; Fungi - 63; Plants - 372; Viruses - 0; Other Eukaryotes - 1543 (source: NCBI BLink).  protein_id AT4G33180.1p  transcript_id AT4G33180.1  protein_id AT4G33180.1p  transcript_id AT4G33180.1  
At4g33200	chr4:016014649	0.0	C/16014649-16014792,16014389-16014535,16013383-16013528,16013131-16013287,16012891-16012949,16012493-16012649,16012194-16012343,16011967-16012103,16011729-16011875,16011533-16011634,16011340-16011397,16011155-16011256,16010400-16010437,16010188-16010314,16009932-16010105,16009673-16009804,16009016-16009125,16008653-16008713,16008380-16008557,16007905-16008110,16007614-16007733,16007419-16007517,16007117-16007338,16006276-16006415,16006088-16006187,16005760-16005810,16005534-16005623,16005211-16005381,16004928-16005059,16004622-16004798,16004402-16004536,16004085-16004155,16003896-16003995,16003765-16003821,16003602-16003658,16003416-16003496,16003245-16003327,16002768-16002918	AT4G33200.1  CDS  gene_syn ATXI-I, F4I10.130, F4I10_130, MYOSIN XI I, MYOSIN XI-15, XI-15, XI-I  gene XI-I  function member of Myosin-like proteins  go_component myosin complex|GO:0016459||IEA  go_component myosin complex|GO:0016459||ISS  go_process actin filament-based movement|GO:0030048|11516337|TAS  go_function motor activity|GO:0003774|11516337|ISS  go_function motor activity|GO:0003774||ISS  go_function protein binding|GO:0005515||ISS  product XI-I; motor/ protein binding  note XI-I; FUNCTIONS IN: protein binding, motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: myosin complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), ATPase, AAA+ type, core (InterPro:IPR003593), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor region (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: XIC; motor/ protein binding (TAIR:AT1G08730.1); Has 17418 Blast hits to 12244 proteins in 888 species: Archae - 150; Bacteria - 816; Metazoa - 11182; Fungi - 987; Plants - 652; Viruses - 21; Other Eukaryotes - 3610 (source: NCBI BLink).  protein_id AT4G33200.1p  transcript_id AT4G33200.1  protein_id AT4G33200.1p  transcript_id AT4G33200.1  
At4g33210	chr4:016020330	0.0	C/16020330-16020697,16019881-16020112,16019662-16019794,16019431-16019530,16019151-16019348,16018791-16019061,16018600-16018698,16018406-16018494,16018199-16018325,16017931-16018101,16017667-16017819,16017424-16017584,16017141-16017339,16016670-16016959,16016348-16016411,16016155-16016241,16015971-16016057	AT4G33210.1  CDS  gene_syn F4I10.140, F4I10_140  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product F-box family protein (FBL15)  note F-box family protein (FBL15); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: F-box family protein (FBL3) (TAIR:AT5G01720.1); Has 8033 Blast hits to 3621 proteins in 216 species: Archae - 0; Bacteria - 357; Metazoa - 3587; Fungi - 634; Plants - 2386; Viruses - 2; Other Eukaryotes - 1067 (source: NCBI BLink).  protein_id AT4G33210.1p  transcript_id AT4G33210.1  protein_id AT4G33210.1p  transcript_id AT4G33210.1  
At4g33220	chr4:016022506	0.0	W/16022506-16022788,16024365-16024493,16024672-16025139,16025240-16025563,16025757-16026130	AT4G33220.1  CDS  gene_syn A. THALIANA PECTIN METHYLESTERASE 44, ATPME44, F4I10.150, F4I10_150, PECTIN METHYLESTERASE 44, PME44  gene PME44  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product enzyme inhibitor/ pectinesterase  note enzyme inhibitor/ pectinesterase; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase inhibitor (InterPro:IPR006501), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT3G43270.1); Has 1247 Blast hits to 1216 proteins in 178 species: Archae - 0; Bacteria - 249; Metazoa - 1; Fungi - 131; Plants - 866; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G33220.1p  transcript_id AT4G33220.1  protein_id AT4G33220.1p  transcript_id AT4G33220.1  
At4g33230	chr4:016027784	0.0	C/16027784-16028754,16027401-16027561,16026591-16027288	AT4G33230.1  CDS  gene_syn F4I10.160, F4I10_160  go_component cell wall|GO:0005618||IEA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: sperm cell, male gametophyte, sepal, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase inhibitor (InterPro:IPR006501), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT2G26450.1); Has 1421 Blast hits to 1374 proteins in 194 species: Archae - 0; Bacteria - 255; Metazoa - 7; Fungi - 134; Plants - 1019; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G33230.1p  transcript_id AT4G33230.1  protein_id AT4G33230.1p  transcript_id AT4G33230.1  
At4g33240	chr4:016036680	0.0	C/16036680-16037278,16035783-16036502,16035046-16035199,16034550-16034894,16033639-16034424,16032899-16033227,16032452-16032575,16032191-16032355,16030373-16031812,16029956-16030222,16029504-16029845	AT4G33240.2  CDS  gene_syn F4I10.170, F4I10_170  go_process cellular protein metabolic process|GO:0044267||IEA  go_process phosphatidylinositol metabolic process|GO:0046488||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function phosphatidylinositol phosphate kinase activity|GO:0016307||IEA  go_function zinc ion binding|GO:0008270||ISS  go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308||ISS  product 1-phosphatidylinositol-4-phosphate 5-kinase/ ATP binding / phosphatidylinositol phosphate kinase/ protein binding / zinc ion binding  note 1-phosphatidylinositol-4-phosphate 5-kinase/ ATP binding / phosphatidylinositol phosphate kinase/ protein binding / zinc ion binding; FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity, protein binding, phosphatidylinositol phosphate kinase activity, zinc ion binding, ATP binding; INVOLVED IN: phosphatidylinositol metabolic process, cellular protein metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Zinc finger, FYVE-type (InterPro:IPR000306), Zinc finger, FYVE-related (InterPro:IPR017455), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: phosphatidylinositol-4-phosphate 5-kinase family protein (TAIR:AT3G14270.1); Has 6503 Blast hits to 5993 proteins in 343 species: Archae - 342; Bacteria - 24; Metazoa - 3215; Fungi - 1190; Plants - 514; Viruses - 3; Other Eukaryotes - 1215 (source: NCBI BLink).  protein_id AT4G33240.2p  transcript_id AT4G33240.2  protein_id AT4G33240.2p  transcript_id AT4G33240.2  
At4g33240	chr4:016036680	0.0	C/16036680-16037278,16035783-16036505,16035046-16035199,16034550-16034894,16033639-16034424,16032899-16033227,16032452-16032575,16032191-16032355,16030373-16031812,16029956-16030222,16029504-16029845	AT4G33240.1  CDS  gene_syn F4I10.170, F4I10_170  go_process cellular protein metabolic process|GO:0044267||IEA  go_process phosphatidylinositol metabolic process|GO:0046488||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function phosphatidylinositol phosphate kinase activity|GO:0016307||IEA  go_function zinc ion binding|GO:0008270||ISS  go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308||ISS  product 1-phosphatidylinositol-4-phosphate 5-kinase/ ATP binding / phosphatidylinositol phosphate kinase/ protein binding / zinc ion binding  note 1-phosphatidylinositol-4-phosphate 5-kinase/ ATP binding / phosphatidylinositol phosphate kinase/ protein binding / zinc ion binding; FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity, protein binding, phosphatidylinositol phosphate kinase activity, zinc ion binding, ATP binding; INVOLVED IN: phosphatidylinositol metabolic process, cellular protein metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Zinc finger, FYVE-type (InterPro:IPR000306), Zinc finger, FYVE-related (InterPro:IPR017455), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: phosphatidylinositol-4-phosphate 5-kinase family protein (TAIR:AT3G14270.1); Has 6744 Blast hits to 6200 proteins in 356 species: Archae - 342; Bacteria - 234; Metazoa - 3236; Fungi - 1194; Plants - 514; Viruses - 3; Other Eukaryotes - 1221 (source: NCBI BLink).  protein_id AT4G33240.1p  transcript_id AT4G33240.1  protein_id AT4G33240.1p  transcript_id AT4G33240.1  
At4g33250	chr4:016040504	0.0	C/16040504-16040617,16040357-16040413,16040150-16040263,16039869-16039919,16039721-16039787,16039444-16039526,16039066-16039260	AT4G33250.1  CDS  gene_syn ATTIF3K1, EIF3K, EUKARYOTIC TRANSLATION INITIATION FACTOR 3K, F17M5.10, F17M5_10, TIF3K1  gene EIF3K  function Encodes initiation factor 3k (EIF3k).  go_process translational initiation|GO:0006413||IEA  go_process regulation of translational initiation|GO:0006446||IEA  go_component eukaryotic translation initiation factor 3 complex|GO:0005852|11042177|ISS  go_function translation initiation factor activity|GO:0003743||ISS  product EIF3K (EUKARYOTIC TRANSLATION INITIATION FACTOR 3K); translation initiation factor  note EUKARYOTIC TRANSLATION INITIATION FACTOR 3K (EIF3K); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation, regulation of translational initiation; LOCATED IN: eukaryotic translation initiation factor 3 complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Translation initiation factor 3, subunit 12, N-terminal, eukaryotic (InterPro:IPR016020), Translation initiation factor 3, subunit 12, eukaryotic (InterPro:IPR009374), Armadillo-type fold (InterPro:IPR016024), SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro:IPR005062); Has 303 Blast hits to 303 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 144; Fungi - 52; Plants - 71; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT4G33250.1p  transcript_id AT4G33250.1  protein_id AT4G33250.1p  transcript_id AT4G33250.1  
At4g33260	chr4:016043112	0.0	C/16043112-16043180,16042504-16042782,16042132-16042401,16041470-16042051,16041233-16041376	AT4G33260.1  CDS  gene_syn CDC20.2, F17M5.20, F17M5_20  gene CDC20.2  function putative cdc20 protein (CDC20.2)  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_process signal transduction|GO:0007165||ISS  go_function signal transducer activity|GO:0004871||ISS  product CDC20.2; signal transducer  note CDC20.2; FUNCTIONS IN: signal transducer activity; INVOLVED IN: signal transduction; LOCATED IN: heterotrimeric G-protein complex; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: CDC20.1; signal transducer (TAIR:AT4G33270.1); Has 36680 Blast hits to 18230 proteins in 535 species: Archae - 50; Bacteria - 5069; Metazoa - 16676; Fungi - 7163; Plants - 3148; Viruses - 0; Other Eukaryotes - 4574 (source: NCBI BLink).  protein_id AT4G33260.1p  transcript_id AT4G33260.1  protein_id AT4G33260.1p  transcript_id AT4G33260.1  
At4g33270	chr4:016046492	0.0	C/16046492-16046590,16045828-16046106,16045456-16045725,16044793-16045374,16044545-16044688	AT4G33270.1  CDS  gene_syn CDC20.1, F17M5.30, F17M5_30  gene CDC20.1  function putative cdc20 protein (CDC20.1)  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_process signal transduction|GO:0007165||ISS  go_function signal transducer activity|GO:0004871||ISS  product CDC20.1; signal transducer  note CDC20.1; FUNCTIONS IN: signal transducer activity; INVOLVED IN: signal transduction; LOCATED IN: heterotrimeric G-protein complex; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: CDC20.2; signal transducer (TAIR:AT4G33260.1); Has 36699 Blast hits to 18235 proteins in 535 species: Archae - 52; Bacteria - 5064; Metazoa - 16677; Fungi - 7164; Plants - 3163; Viruses - 0; Other Eukaryotes - 4579 (source: NCBI BLink).  protein_id AT4G33270.1p  transcript_id AT4G33270.1  protein_id AT4G33270.1p  transcript_id AT4G33270.1  
At4g33280	chr4:016049200	0.0	C/16049200-16049310,16048639-16048939,16048276-16048455,16047745-16047866,16047357-16047656	AT4G33280.1  CDS  gene_syn F17M5.40, F17M5_40  go_component vacuole|GO:0005773|15539469|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product DNA binding / transcription factor  note DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: VRN1 (REDUCED VERNALIZATION RESPONSE 1); transcription repressor (TAIR:AT3G18990.1); Has 309 Blast hits to 256 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 309; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G33280.1p  transcript_id AT4G33280.1  protein_id AT4G33280.1p  transcript_id AT4G33280.1  
At4g33290	chr4:016049573	0.0	W/16049573-16050865	AT4G33290.1  CDS  gene_syn F17M5.50, F17M5_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sepal, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G38590.1); Has 702 Blast hits to 678 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 702; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G33290.1p  transcript_id AT4G33290.1  protein_id AT4G33290.1p  transcript_id AT4G33290.1  
At4g33300	chr4:016053324	0.0	C/16053324-16054005,16052819-16053195,16052383-16052738,16052090-16052295,16051162-16051991	AT4G33300.1  CDS  gene_syn ADR1-L1, ADR1-like 1, F17M5.60, F17M5_60  gene ADR1-L1  go_component apoplast|GO:0048046|18538804|IDA  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product ADR1-L1 (ADR1-like 1); ATP binding / protein binding  note ADR1-like 1 (ADR1-L1); FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance, plant (InterPro:IPR014011), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: ADR1-L2 (ADR1-like 2); ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding (TAIR:AT5G04720.1); Has 16855 Blast hits to 11216 proteins in 429 species: Archae - 18; Bacteria - 957; Metazoa - 1955; Fungi - 24; Plants - 13390; Viruses - 0; Other Eukaryotes - 511 (source: NCBI BLink).  protein_id AT4G33300.1p  transcript_id AT4G33300.1  protein_id AT4G33300.1p  transcript_id AT4G33300.1  
At4g33300	chr4:016053324	0.0	C/16053324-16054005,16052819-16053195,16052383-16052738,16052090-16052295,16051162-16051991	AT4G33300.2  CDS  gene_syn ADR1-L1, ADR1-like 1, F17M5.60, F17M5_60  gene ADR1-L1  go_component apoplast|GO:0048046|18538804|IDA  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product ADR1-L1 (ADR1-like 1); ATP binding / protein binding  note ADR1-like 1 (ADR1-L1); FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance, plant (InterPro:IPR014011), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: ADR1-L2 (ADR1-like 2); ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding (TAIR:AT5G04720.1); Has 16855 Blast hits to 11216 proteins in 429 species: Archae - 18; Bacteria - 957; Metazoa - 1955; Fungi - 24; Plants - 13390; Viruses - 0; Other Eukaryotes - 511 (source: NCBI BLink).  protein_id AT4G33300.2p  transcript_id AT4G33300.2  protein_id AT4G33300.2p  transcript_id AT4G33300.2  
At4g33310	chr4:016056156	0.0	W/16056156-16056416	AT4G33310.1  CDS  gene_syn F17M5.70, F17M5_70  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G33310.1p  transcript_id AT4G33310.1  protein_id AT4G33310.1p  transcript_id AT4G33310.1  
At4g33320	chr4:016057038	0.0	C/16057038-16057916	AT4G33320.1  CDS  gene_syn F17M5.80, F17M5_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF641, plant (InterPro:IPR006943); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45260.1); Has 152 Blast hits to 152 proteins in 22 species: Archae - 0; Bacteria - 4; Metazoa - 12; Fungi - 5; Plants - 114; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT4G33320.1p  transcript_id AT4G33320.1  protein_id AT4G33320.1p  transcript_id AT4G33320.1  
At4g33330	chr4:016062876	0.0	C/16062876-16063061,16062134-16062788,16060651-16061176,16060142-16060565	AT4G33330.1  CDS  gene_syn F17M5.90, F17M5_90, PGSIP3, PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 3  gene PGSIP3  go_component endomembrane system|GO:0012505||IEA  go_process biosynthetic process|GO:0009058||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product transferase, transferring glycosyl groups  note PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 3 (PGSIP3); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, inflorescence meristem, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1); transferase, transferring glycosyl groups (TAIR:AT3G18660.2); Has 940 Blast hits to 938 proteins in 210 species: Archae - 0; Bacteria - 76; Metazoa - 225; Fungi - 197; Plants - 305; Viruses - 72; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT4G33330.1p  transcript_id AT4G33330.1  protein_id AT4G33330.1p  transcript_id AT4G33330.1  
At4g33330	chr4:016062876	0.0	C/16062876-16063061,16062134-16062788,16060651-16061176,16060162-16060565,16059754-16059863	AT4G33330.2  CDS  gene_syn F17M5.90, F17M5_90, PGSIP3, PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 3  gene PGSIP3  go_component endomembrane system|GO:0012505||IEA  go_process biosynthetic process|GO:0009058||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product transferase, transferring glycosyl groups  note PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 3 (PGSIP3); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, inflorescence meristem, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1); transferase, transferring glycosyl groups (TAIR:AT3G18660.2).  protein_id AT4G33330.2p  transcript_id AT4G33330.2  protein_id AT4G33330.2p  transcript_id AT4G33330.2  
At4g33350	chr4:016066350	0.0	C/16066350-16066715,16066197-16066259,16065750-16065824,16065603-16065653,16065426-16065485,16065258-16065320,16064816-16064851,16064638-16064730	AT4G33350.1  CDS  gene_syn F17M5.110, F17M5_110  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_component chloroplast inner membrane|GO:0009706||ISS  product chloroplast inner membrane import protein Tic22, putative  note chloroplast inner membrane import protein Tic22, putative; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chloroplast protein import component Tic22 (InterPro:IPR005692), Tic22-like (InterPro:IPR007378); BEST Arabidopsis thaliana protein match is: chloroplast inner membrane import protein Tic22, putative (TAIR:AT3G23710.1); Has 81 Blast hits to 81 proteins in 28 species: Archae - 0; Bacteria - 40; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT4G33350.1p  transcript_id AT4G33350.1  protein_id AT4G33350.1p  transcript_id AT4G33350.1  
At4g33355	chr4:016067097	0.0	W/16067097-16067446,16067559-16067568	AT4G33355.1  CDS  function Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_function lipid binding|GO:0008289||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product lipid binding  note lipid binding; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding (TAIR:AT5G59320.1); Has 818 Blast hits to 818 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 815; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G33355.1p  transcript_id AT4G33355.1  protein_id AT4G33355.1p  transcript_id AT4G33355.1  
At4g33355	chr4:016067097	0.0	W/16067097-16067450	AT4G33355.2  CDS  function Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_function lipid binding|GO:0008289||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product lipid binding  note lipid binding; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding (TAIR:AT5G59320.1); Has 816 Blast hits to 816 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 813; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G33355.2p  transcript_id AT4G33355.2  protein_id AT4G33355.2p  transcript_id AT4G33355.2  
At4g33360	chr4:016069081	0.0	C/16069081-16069374,16068869-16068997,16068631-16068795,16068225-16068530,16067989-16068129	AT4G33360.1  CDS  gene_syn F17M5.120, F17M5_120  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process terpenoid metabolic process|GO:0006721||ISS  product terpene cyclase/mutase-related  note terpene cyclase/mutase-related; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: cellular metabolic process, terpenoid metabolic process, metabolic process; LOCATED IN: endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamyl-alcohol dehydrogenase family / CAD family (TAIR:AT1G09490.1); Has 21542 Blast hits to 21540 proteins in 1788 species: Archae - 375; Bacteria - 12002; Metazoa - 613; Fungi - 649; Plants - 1502; Viruses - 68; Other Eukaryotes - 6333 (source: NCBI BLink).  protein_id AT4G33360.1p  transcript_id AT4G33360.1  protein_id AT4G33360.1p  transcript_id AT4G33360.1  
At4g33360	chr4:016069081	0.0	C/16069081-16069374,16068869-16068997,16068631-16068795,16068225-16068530,16068123-16068146	AT4G33360.2  CDS  gene_syn F17M5.120, F17M5_120  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process terpenoid metabolic process|GO:0006721||ISS  product terpene cyclase/mutase-related  note terpene cyclase/mutase-related; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: cellular metabolic process, terpenoid metabolic process, metabolic process; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamyl-alcohol dehydrogenase family / CAD family (TAIR:AT1G09490.1); Has 20877 Blast hits to 20875 proteins in 1766 species: Archae - 374; Bacteria - 11541; Metazoa - 597; Fungi - 613; Plants - 1493; Viruses - 66; Other Eukaryotes - 6193 (source: NCBI BLink).  protein_id AT4G33360.2p  transcript_id AT4G33360.2  protein_id AT4G33360.2p  transcript_id AT4G33360.2  
At4g33370	chr4:016071316	0.0	C/16071316-16071405,16069669-16071207	AT4G33370.1  CDS  gene_syn F17M5.130, F17M5_130  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD-box protein abstrakt, putative  note DEAD-box protein abstrakt, putative; FUNCTIONS IN: helicase activity, zinc ion binding, ATP-dependent helicase activity, ATP binding, nucleic acid binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, CCHC-type (InterPro:IPR001878), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD-box protein abstrakt, putative (TAIR:AT5G51280.1); Has 29433 Blast hits to 28917 proteins in 1780 species: Archae - 515; Bacteria - 12192; Metazoa - 5139; Fungi - 3432; Plants - 1424; Viruses - 8; Other Eukaryotes - 6723 (source: NCBI BLink).  protein_id AT4G33370.1p  transcript_id AT4G33370.1  protein_id AT4G33370.1p  transcript_id AT4G33370.1  
At4g33380	chr4:016072064	0.0	W/16072064-16072229,16072320-16072408,16072481-16072619,16073650-16073748,16073880-16074002,16074119-16074378,16074495-16074605	AT4G33380.1  CDS  gene_syn F17M5.140, F17M5_140  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: pollen tube; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G04555.1); Has 105 Blast hits to 102 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT4G33380.1p  transcript_id AT4G33380.1  protein_id AT4G33380.1p  transcript_id AT4G33380.1  
At4g33390	chr4:016075282	0.0	W/16075282-16075842,16075928-16077706	AT4G33390.1  CDS  gene_syn F17M5.150, F17M5_150  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G26570.1); Has 129294 Blast hits to 62901 proteins in 2243 species: Archae - 1448; Bacteria - 22172; Metazoa - 61135; Fungi - 9667; Plants - 5233; Viruses - 570; Other Eukaryotes - 29069 (source: NCBI BLink).  protein_id AT4G33390.1p  transcript_id AT4G33390.1  protein_id AT4G33390.1p  transcript_id AT4G33390.1  
At4g33400	chr4:016078755	0.0	C/16078755-16080410,16078189-16078470	AT4G33400.1  CDS  gene_syn F17M5.160, F17M5_160  go_component plasma membrane|GO:0005886|17317660|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function molecular_function|GO:0003674||ND  product dem protein-related / defective embryo and meristems protein-related  note dem protein-related / defective embryo and meristems protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Vacuolar import and degradation, Vid27-related (InterPro:IPR013863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19240.1); Has 171 Blast hits to 171 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 88; Plants - 38; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT4G33400.1p  transcript_id AT4G33400.1  protein_id AT4G33400.1p  transcript_id AT4G33400.1  
At4g33410	chr4:016081640	0.0	W/16081640-16082437,16082579-16082779,16083000-16083119	AT4G33410.1  CDS  gene_syn F17M5.170, F17M5_170  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process biological_process|GO:0008150||ND  product signal peptide peptidase family protein  note signal peptide peptidase family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22B, signal peptide peptidase (InterPro:IPR007369); BEST Arabidopsis thaliana protein match is: protease-associated (PA) domain-containing protein (TAIR:AT2G43070.1); Has 697 Blast hits to 691 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 390; Fungi - 77; Plants - 139; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).  protein_id AT4G33410.1p  transcript_id AT4G33410.1  protein_id AT4G33410.1p  transcript_id AT4G33410.1  
At4g33420	chr4:016084856	0.0	W/16084856-16085101,16085188-16085376,16085474-16085636,16085726-16086105	AT4G33420.1  CDS  gene_syn F17M5.180, F17M5_180  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase (TAIR:AT5G51890.1); Has 3160 Blast hits to 3144 proteins in 249 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 303; Plants - 2801; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT4G33420.1p  transcript_id AT4G33420.1  protein_id AT4G33420.1p  transcript_id AT4G33420.1  
At4g33430	chr4:016090204	0.0	C/16090204-16090288,16089802-16089934,16089648-16089719,16089335-16089478,16088544-16088615,16088366-16088437,16088214-16088290,16087970-16088101,16087551-16087892,16087059-16087453,16086654-16086977	AT4G33430.1  CDS  gene_syn ATBAK1, ATSERK3, BAK1, BRI1-ASSOCIATED RECEPTOR KINASE, ELG, ELONGATED, F17M5.190, F17M5_190, RECEPTOR KINASES LIKE SERK 10, RKS10, SERK3, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3  gene BAK1  function Leu-rich receptor Serine/threonine protein kinase. Component of BR signaling that interacts with BRI1 in vitro and in vivo to form a heterodimer. Brassinolide-dependent association of BRI1 and BAK1 in vivo. Phosphorylation of both BRI1 and BAK1 on Thr residues was BR dependent. Although BAK1 and BRI1 alone localize in the plasma membrane, when BAK1 and BRI1 are coexpressed, the heterodimer BAK1/BRI1 they form is localized in the endosome.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component endosome|GO:0005768|15548744|IDA  go_component plasma membrane|GO:0005886|12150928|IDA  go_component protein complex|GO:0043234|16473966|IPI  go_process defense response to oomycetes|GO:0002229|17583510|IMP  go_process cell death|GO:0008219|18667726|IMP  go_process brassinosteroid mediated signaling|GO:0009742|12150928|IGI  go_process brassinosteroid mediated signaling|GO:0009742|18667726|IMP  go_process cell growth|GO:0016049|8919908|IMP  go_process defense response to bacterium|GO:0042742|17583510|IMP  go_process defense response to fungus|GO:0050832|17583510|IMP  go_function protein serine/threonine kinase activity|GO:0004674|12150929|IDA  go_function protein binding|GO:0005515|12150929|IPI  go_function kinase activity|GO:0016301||ISS  go_function protein heterodimerization activity|GO:0046982|15548744|IPI  product BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE); kinase/ protein binding / protein heterodimerization/ protein serine/threonine kinase  note BRI1-ASSOCIATED RECEPTOR KINASE (BAK1); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein heterodimerization activity, kinase activity; INVOLVED IN: in 6 processes; LOCATED IN: endosome, plasma membrane, protein complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: SERK4 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 4); protein binding / protein kinase/ transmembrane receptor protein serine/threonine kinase (TAIR:AT2G13790.1); Has 119945 Blast hits to 87280 proteins in 3061 species: Archae - 65; Bacteria - 8918; Metazoa - 39894; Fungi - 6072; Plants - 49167; Viruses - 377; Other Eukaryotes - 15452 (source: NCBI BLink).  protein_id AT4G33430.1p  transcript_id AT4G33430.1  protein_id AT4G33430.1p  transcript_id AT4G33430.1  
At4g33440	chr4:016092020	0.0	W/16092020-16092442,16093220-16093340,16093653-16093827,16093918-16093988,16094095-16094732	AT4G33440.1  CDS  gene_syn F17M5.200, F17M5_200  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT3G62110.1); Has 2467 Blast hits to 2461 proteins in 313 species: Archae - 2; Bacteria - 583; Metazoa - 8; Fungi - 933; Plants - 833; Viruses - 2; Other Eukaryotes - 106 (source: NCBI BLink).  protein_id AT4G33440.1p  transcript_id AT4G33440.1  protein_id AT4G33440.1p  transcript_id AT4G33440.1  
At4g33450	chr4:016096444	0.0	C/16096444-16096603,16095746-16096338	AT4G33450.1  CDS  gene_syn ATMYB69, F17M5.210, F17M5_210, MYB DOMAIN PROTEIN 69, MYB69  gene MYB69  function Member of the R2R3 factor gene family.  go_component nucleus|GO:0005634|18952777|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|18952777|IDA  product MYB69 (MYB DOMAIN PROTEIN 69); DNA binding / transcription activator/ transcription factor  note MYB DOMAIN PROTEIN 69 (MYB69); FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of secondary cell wall thickening; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB54 (MYB DOMAIN PROTEIN 54); DNA binding / transcription factor (TAIR:AT1G73410.1); Has 6097 Blast hits to 5527 proteins in 370 species: Archae - 0; Bacteria - 0; Metazoa - 655; Fungi - 367; Plants - 3330; Viruses - 3; Other Eukaryotes - 1742 (source: NCBI BLink).  protein_id AT4G33450.1p  transcript_id AT4G33450.1  protein_id AT4G33450.1p  transcript_id AT4G33450.1  
At4g33460	chr4:016099850	0.0	C/16099850-16100113,16099458-16099544,16098990-16099118,16098781-16098903,16098325-16098537	AT4G33460.1  CDS  gene_syn ATNAP13, EMB2751, F17M5.220, F17M5_220, embryo defective 2751  gene ATNAP13  function member of NAP subfamily  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  product ATNAP13; transporter  note ATNAP13; FUNCTIONS IN: transporter activity; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PGP3 (P-GLYCOPROTEIN 3); ATPase, coupled to transmembrane movement of substances (TAIR:AT4G01820.1); Has 237119 Blast hits to 216214 proteins in 2541 species: Archae - 4303; Bacteria - 162984; Metazoa - 8099; Fungi - 4313; Plants - 2454; Viruses - 21; Other Eukaryotes - 54945 (source: NCBI BLink).  protein_id AT4G33460.1p  transcript_id AT4G33460.1  protein_id AT4G33460.1p  transcript_id AT4G33460.1  
At4g33465	chr4:016100758	0.0	W/16100758-16100830,16101008-16101231	AT4G33465.1  CDS  gene_syn SCR-Like 22, SCRL22  gene SCRL22  function Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165||IEA  product SCRL22 (SCR-Like 22)  note SCR-Like 22 (SCRL22); INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility response (InterPro:IPR010682); BEST Arabidopsis thaliana protein match is: SCRL23 (SCR-Like 23) (TAIR:AT4G14785.1); Has 23 Blast hits to 23 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G33465.1p  transcript_id AT4G33465.1  protein_id AT4G33465.1p  transcript_id AT4G33465.1  
At4g33467	chr4:016101926	0.0	C/16101926-16102084,16101691-16101837	AT4G33467.2  CDS  product unknown protein  note unknown protein; Has 12 Blast hits to 12 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G33467.2p  transcript_id AT4G33467.2  protein_id AT4G33467.2p  transcript_id AT4G33467.2  
At4g33467	chr4:016101926	0.0	C/16101926-16102084,16101691-16101840	AT4G33467.1  CDS  product unknown protein  note unknown protein; Has 12 Blast hits to 12 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G33467.1p  transcript_id AT4G33467.1  protein_id AT4G33467.1p  transcript_id AT4G33467.1  
At4g33470	chr4:016105400	0.0	C/16105400-16105439,16104913-16105103,16104758-16104832,16104261-16104362,16104031-16104102,16103897-16103953,16103549-16103800,16103171-16103352,16102774-16103074	AT4G33470.1  CDS  gene_syn F17M5.230, F17M5_230, hda14, histone deacetylase 14  gene hda14  function Encodes HDA14, a member of the histone deacetylase family proteins.  go_component chloroplast|GO:0009507|18431481|IDA  go_process histone deacetylation|GO:0016575||ISS  go_function histone deacetylase activity|GO:0004407|12466527|ISS  go_function histone deacetylase activity|GO:0004407||ISS  product hda14 (histone deacetylase 14); histone deacetylase  note histone deacetylase 14 (hda14); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: histone deacetylation; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: HDA15; histone deacetylase (TAIR:AT3G18520.2); Has 6978 Blast hits to 6842 proteins in 846 species: Archae - 124; Bacteria - 2011; Metazoa - 1116; Fungi - 423; Plants - 275; Viruses - 0; Other Eukaryotes - 3029 (source: NCBI BLink).  protein_id AT4G33470.1p  transcript_id AT4G33470.1  protein_id AT4G33470.1p  transcript_id AT4G33470.1  
At4g33480	chr4:016108048	0.0	C/16108048-16108497,16107860-16107957,16107735-16107780,16107450-16107532,16107289-16107353,16106874-16106935,16106518-16106577,16106339-16106371,16105934-16105999,16105804-16105851	AT4G33480.1  CDS  gene_syn F17M5.240, F17M5_240  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 172 Blast hits to 172 proteins in 56 species: Archae - 0; Bacteria - 86; Metazoa - 0; Fungi - 1; Plants - 22; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT4G33480.1p  transcript_id AT4G33480.1  protein_id AT4G33480.1p  transcript_id AT4G33480.1  
At4g33490	chr4:016110507	0.0	C/16110507-16110670,16110293-16110410,16109983-16110206,16109656-16109883,16109426-16109567,16109146-16109346,16108928-16109056	AT4G33490.1  CDS  gene_syn F17M5.250, F17M5_250  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  product aspartic-type endopeptidase  note aspartic-type endopeptidase; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: nucellin protein, putative (TAIR:AT1G44130.1); Has 1138 Blast hits to 1134 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 66; Fungi - 37; Plants - 965; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT4G33490.1p  transcript_id AT4G33490.1  protein_id AT4G33490.1p  transcript_id AT4G33490.1  
At4g33495	chr4:016111349	0.0	C/16111349-16112578	AT4G33495.1  CDS  gene_syn ROOT PRIMORDIUM DEFECTIVE 1, RPD1  gene RPD1  function A member of the RPD gene family - there are13 annotated genes and one EST encoding RPD1-like proteins in Arabidopsis. Shows no homology to any protein of known function. Abundant expression found in the shoot apex and the root. rpd1 mutant is a temperature-sensitive mutant isolated on the basis of the impairment in adventitious roots formation in hypocotyl region. Also, disruption of the RPD1 gene by a T-DNA insertion caused embryogenesis arrest at the globular to transition stages. This phenotype is consistent with the hypothesized function of RPD1 in the maintenance of active cell proliferation.  go_component intracellular|GO:0005622||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_process negative regulation of cell proliferation|GO:0008285|16407439|IMP  go_process lateral root morphogenesis|GO:0010102|16407439|IMP  product RPD1 (ROOT PRIMORDIUM DEFECTIVE 1); ubiquitin thiolesterase  note ROOT PRIMORDIUM DEFECTIVE 1 (RPD1); FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: negative regulation of cell proliferation, lateral root morphogenesis; LOCATED IN: intracellular; EXPRESSED IN: shoot apex, cotyledon, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (InterPro:IPR001578); BEST Arabidopsis thaliana protein match is: ubiquitin thiolesterase (TAIR:AT1G06440.1); Has 213 Blast hits to 213 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 213; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G33495.1p  transcript_id AT4G33495.1  protein_id AT4G33495.1p  transcript_id AT4G33495.1  
At4g33500	chr4:016116012	0.0	C/16116012-16116243,16114756-16115765,16114469-16114638,16114223-16114289,16113923-16114010,16113652-16113818,16113422-16113565,16113176-16113304,16112835-16113002	AT4G33500.1  CDS  gene_syn F17M5.260, F17M5_260  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C-related / PP2C-related  note protein phosphatase 2C-related / PP2C-related; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: catalytic (TAIR:AT4G16580.1); Has 6922 Blast hits to 4689 proteins in 525 species: Archae - 32; Bacteria - 1170; Metazoa - 2745; Fungi - 1059; Plants - 300; Viruses - 25; Other Eukaryotes - 1591 (source: NCBI BLink).  protein_id AT4G33500.1p  transcript_id AT4G33500.1  protein_id AT4G33500.1p  transcript_id AT4G33500.1  
At4g33510	chr4:016116496	0.0	W/16116496-16116951,16117036-16117313,16117433-16117709,16117946-16118191,16118283-16118549	AT4G33510.1  CDS  gene_syn 3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE, 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase, DHS2, F17M5.270, F17M5_270  gene DHS2  function Enzyme catalyzing the first committed step in aromatic amino acid biosynthesis  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|1681544|TAS  go_process aromatic amino acid family biosynthetic process|GO:0009073|1681544|TAS  go_process chorismate biosynthetic process|GO:0009423|1681544|IGI  go_function 3-deoxy-7-phosphoheptulonate synthase activity|GO:0003849|1681544|IGI  product DHS2 (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase); 3-deoxy-7-phosphoheptulonate synthase  note 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (DHS2); FUNCTIONS IN: 3-deoxy-7-phosphoheptulonate synthase activity; INVOLVED IN: chorismate biosynthetic process, aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase, class II (InterPro:IPR002480); BEST Arabidopsis thaliana protein match is: 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative (TAIR:AT1G22410.1); Has 3145 Blast hits to 3128 proteins in 396 species: Archae - 0; Bacteria - 664; Metazoa - 0; Fungi - 68; Plants - 130; Viruses - 0; Other Eukaryotes - 2283 (source: NCBI BLink).  protein_id AT4G33510.1p  transcript_id AT4G33510.1  protein_id AT4G33510.1p  transcript_id AT4G33510.1  
At4g33510	chr4:016116496	0.0	W/16116496-16116951,16117036-16117313,16117433-16117709,16117946-16118233	AT4G33510.2  CDS  gene_syn 3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE, 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase, DHS2, F17M5.270, F17M5_270  gene DHS2  function Enzyme catalyzing the first committed step in aromatic amino acid biosynthesis  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|1681544|TAS  go_process aromatic amino acid family biosynthetic process|GO:0009073|1681544|TAS  go_process chorismate biosynthetic process|GO:0009423|1681544|IGI  go_function 3-deoxy-7-phosphoheptulonate synthase activity|GO:0003849|1681544|IGI  product DHS2 (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase); 3-deoxy-7-phosphoheptulonate synthase  note 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (DHS2); FUNCTIONS IN: 3-deoxy-7-phosphoheptulonate synthase activity; INVOLVED IN: chorismate biosynthetic process, aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase, class II (InterPro:IPR002480); BEST Arabidopsis thaliana protein match is: 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative (TAIR:AT1G22410.1); Has 2941 Blast hits to 2924 proteins in 395 species: Archae - 0; Bacteria - 663; Metazoa - 0; Fungi - 68; Plants - 130; Viruses - 0; Other Eukaryotes - 2080 (source: NCBI BLink).  protein_id AT4G33510.2p  transcript_id AT4G33510.2  protein_id AT4G33510.2p  transcript_id AT4G33510.2  
At4g33520	chr4:016118993	0.0	W/16118993-16119457,16119544-16119597,16119765-16119918,16120502-16120542	AT4G33520.1  CDS  gene_syn F17M5.280, F17M5_280, HEAVY METAL ATPASE 6, HMA6, P-TYPE ATP-ASE 1, PAA1  gene PAA1  function Encodes a putative metal-transporting P-type ATPase.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast envelope|GO:0009941|15772282|IDA  go_process photosynthetic electron transport chain|GO:0009767|15772282|IMP  go_function copper ion transmembrane transporter activity|GO:0005375|15772282|IMP  go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662|9188794|ISS  go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662||ISS  product PAA1 (P-TYPE ATP-ASE 1); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism / copper ion transmembrane transporter  note P-TYPE ATP-ASE 1 (PAA1); FUNCTIONS IN: copper ion transmembrane transporter activity, ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: photosynthetic electron transport chain; LOCATED IN: chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), Heavy-metal-associated, conserved site (InterPro:IPR017969); BEST Arabidopsis thaliana protein match is: PAA2 (P-TYPE ATPASE OF ARABIDOPSIS 2); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism / copper ion transmembrane transporter (TAIR:AT5G21930.2); Has 1633 Blast hits to 1395 proteins in 359 species: Archae - 7; Bacteria - 697; Metazoa - 439; Fungi - 75; Plants - 133; Viruses - 34; Other Eukaryotes - 248 (source: NCBI BLink).  protein_id AT4G33520.1p  transcript_id AT4G33520.1  protein_id AT4G33520.1p  transcript_id AT4G33520.1  
At4g33520	chr4:016118993	0.0	W/16118993-16119457,16119544-16119597,16119765-16119918,16121203-16121277,16121367-16121644,16121983-16122210,16122385-16122483,16122617-16122766,16122891-16123037,16123294-16123344,16123426-16123583,16123735-16123867,16123953-16124050,16124435-16124681,16124930-16125133,16125441-16125521,16125622-16125849	AT4G33520.2  CDS  gene_syn F17M5.280, F17M5_280, HEAVY METAL ATPASE 6, HMA6, P-TYPE ATP-ASE 1, PAA1  gene PAA1  function Encodes a putative metal-transporting P-type ATPase.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|15772282|IDA  go_process photosynthetic electron transport chain|GO:0009767|15772282|IMP  go_function copper ion transmembrane transporter activity|GO:0005375|15772282|IMP  go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662|9188794|ISS  go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662||ISS  product PAA1 (P-TYPE ATP-ASE 1); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism / copper ion transmembrane transporter  note P-TYPE ATP-ASE 1 (PAA1); FUNCTIONS IN: copper ion transmembrane transporter activity, ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: photosynthetic electron transport chain; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type copper-transporter (InterPro:IPR001756), Heavy metal transport/detoxification protein (InterPro:IPR006121), ATPase, P type, cation/copper-transporter (InterPro:IPR006403), ATPase, P-type, ATPase-associated region (InterPro:IPR008250), Heavy-metal-associated, conserved site (InterPro:IPR017969), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, heavy metal translocating (InterPro:IPR006416), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: PAA2 (P-TYPE ATPASE OF ARABIDOPSIS 2); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism / copper ion transmembrane transporter (TAIR:AT5G21930.2); Has 22870 Blast hits to 19084 proteins in 1841 species: Archae - 484; Bacteria - 12354; Metazoa - 3736; Fungi - 1716; Plants - 1120; Viruses - 37; Other Eukaryotes - 3423 (source: NCBI BLink).  protein_id AT4G33520.2p  transcript_id AT4G33520.2  protein_id AT4G33520.2p  transcript_id AT4G33520.2  
At4g33520	chr4:016118993	0.0	W/16118993-16119457,16119544-16119597,16119765-16119918,16121203-16121277,16121367-16121644,16121983-16122210,16122385-16122483,16122617-16122766,16122891-16123037,16123294-16123344,16123426-16123583,16123735-16123867,16123953-16124050,16124435-16124681,16124930-16125133,16125441-16125525,16125626-16125849	AT4G33520.3  CDS  gene_syn F17M5.280, F17M5_280, HEAVY METAL ATPASE 6, HMA6, P-TYPE ATP-ASE 1, PAA1  gene PAA1  function Encodes a putative metal-transporting P-type ATPase.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|15772282|IDA  go_process photosynthetic electron transport chain|GO:0009767|15772282|IMP  go_function copper ion transmembrane transporter activity|GO:0005375|15772282|IMP  go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662|9188794|ISS  go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662||ISS  product PAA1 (P-TYPE ATP-ASE 1); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism / copper ion transmembrane transporter  note P-TYPE ATP-ASE 1 (PAA1); FUNCTIONS IN: copper ion transmembrane transporter activity, ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: photosynthetic electron transport chain; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121), ATPase, P type, cation/copper-transporter (InterPro:IPR006403), ATPase, P-type, ATPase-associated region (InterPro:IPR008250), Heavy-metal-associated, conserved site (InterPro:IPR017969), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, heavy metal translocating (InterPro:IPR006416), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: PAA2 (P-TYPE ATPASE OF ARABIDOPSIS 2); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism / copper ion transmembrane transporter (TAIR:AT5G21930.2); Has 22867 Blast hits to 19084 proteins in 1841 species: Archae - 484; Bacteria - 12352; Metazoa - 3735; Fungi - 1716; Plants - 1120; Viruses - 37; Other Eukaryotes - 3423 (source: NCBI BLink).  protein_id AT4G33520.3p  transcript_id AT4G33520.3  protein_id AT4G33520.3p  transcript_id AT4G33520.3  
At4g33530	chr4:016130060	0.0	C/16130060-16130353,16129738-16129966,16129409-16129657,16129230-16129280,16128650-16128910,16128493-16128545,16128280-16128394,16127906-16128160,16127129-16127651,16126503-16127040	AT4G33530.1  CDS  gene_syn KUP5, T16L1.20, T16L1_20  gene KUP5  function potassium transporter  go_component plasma membrane|GO:0005886|17151019|IDA  go_process potassium ion transport|GO:0006813||IEA  go_process potassium ion transport|GO:0006813||ISS  go_function potassium ion transmembrane transporter activity|GO:0015079||ISS  product KUP5; potassium ion transmembrane transporter  note KUP5; FUNCTIONS IN: potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Potassium uptake protein, kup (InterPro:IPR018519), K+ potassium transporter (InterPro:IPR003855); BEST Arabidopsis thaliana protein match is: KUP7; potassium ion transmembrane transporter (TAIR:AT5G09400.1); Has 2057 Blast hits to 2040 proteins in 597 species: Archae - 13; Bacteria - 1386; Metazoa - 12; Fungi - 67; Plants - 432; Viruses - 4; Other Eukaryotes - 143 (source: NCBI BLink).  protein_id AT4G33530.1p  transcript_id AT4G33530.1  protein_id AT4G33530.1p  transcript_id AT4G33530.1  
At4g33540	chr4:016130882	0.0	W/16130882-16131086,16131183-16131226,16131613-16131693,16131947-16132054,16132280-16132371,16132525-16132599,16132684-16132753,16132999-16133100,16133205-16133313,16133417-16133479,16133560-16133678	AT4G33540.1  CDS  gene_syn T16L1.30, T16L1_30  go_component chloroplast|GO:0009507||IEA  go_function hydrolase activity|GO:0016787||IEA  go_process metabolic process|GO:0008152||ISS  go_process response to arsenic|GO:0046685|17400898|IEP  go_function catalytic activity|GO:0003824||ISS  product metallo-beta-lactamase family protein  note metallo-beta-lactamase family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: response to arsenic, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279); Has 1070 Blast hits to 1070 proteins in 241 species: Archae - 64; Bacteria - 439; Metazoa - 27; Fungi - 6; Plants - 47; Viruses - 0; Other Eukaryotes - 487 (source: NCBI BLink).  protein_id AT4G33540.1p  transcript_id AT4G33540.1  protein_id AT4G33540.1p  transcript_id AT4G33540.1  
At4g33550	chr4:016134538	0.0	W/16134538-16134862,16134942-16134964	AT4G33550.2  CDS  gene_syn T16L1.40, T16L1_40  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product lipid binding  note lipid binding; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT4G30880.1); Has 68 Blast hits to 68 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G33550.2p  transcript_id AT4G33550.2  protein_id AT4G33550.2p  transcript_id AT4G33550.2  
At4g33550	chr4:016134538	0.0	W/16134538-16134930	AT4G33550.1  CDS  gene_syn T16L1.40, T16L1_40  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product lipid binding  note lipid binding; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT4G30880.1); Has 68 Blast hits to 68 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G33550.1p  transcript_id AT4G33550.1  protein_id AT4G33550.1p  transcript_id AT4G33550.1  
At4g33560	chr4:016135465	0.0	W/16135465-16135752	AT4G33560.1  CDS  gene_syn T16L1.50, T16L1_50  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; Has 86 Blast hits to 85 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G33560.1p  transcript_id AT4G33560.1  protein_id AT4G33560.1p  transcript_id AT4G33560.1  
At4g33565	chr4:016136821	0.0	W/16136821-16137924	AT4G33565.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G72220.1); Has 6381 Blast hits to 6365 proteins in 241 species: Archae - 0; Bacteria - 6; Metazoa - 2003; Fungi - 534; Plants - 2649; Viruses - 90; Other Eukaryotes - 1099 (source: NCBI BLink).  protein_id AT4G33565.1p  transcript_id AT4G33565.1  protein_id AT4G33565.1p  transcript_id AT4G33565.1  
At4g33580	chr4:016139406	0.0	W/16139406-16139486,16139583-16139641,16139952-16140104,16140195-16140246,16140357-16140470,16140555-16140608,16140811-16140893,16140980-16141085,16141157-16141363	AT4G33580.2  CDS  gene_syn A. THALIANA BETA CARBONIC ANHYDRASE 5, ATBCA5, BCA5, BETA CARBONIC ANHYDRASE 5, T16L1.70, T16L1_70  gene BCA5  go_component chloroplast|GO:0009507|18431481|IDA  go_process carbon utilization|GO:0015976||IEA  go_function carbonate dehydratase activity|GO:0004089||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component chloroplast|GO:0009507|17407539|IDA  go_process carbon utilization|GO:0015976||ISS  go_function carbonate dehydratase activity|GO:0004089||ISS  go_function zinc ion binding|GO:0008270||ISS  product carbonic anhydrase family protein / carbonate dehydratase family protein  note BETA CARBONIC ANHYDRASE 5 (BCA5); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: carbon utilization; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: carbonic anhydrase family protein / carbonate dehydratase family protein (TAIR:AT1G58180.3); Has 3348 Blast hits to 3334 proteins in 971 species: Archae - 37; Bacteria - 2375; Metazoa - 48; Fungi - 157; Plants - 230; Viruses - 0; Other Eukaryotes - 501 (source: NCBI BLink).  protein_id AT4G33580.2p  transcript_id AT4G33580.2  protein_id AT4G33580.2p  transcript_id AT4G33580.2  
At4g33580	chr4:016139406	0.0	W/16139406-16139486,16139583-16139641,16139952-16140104,16140198-16140246,16140357-16140470,16140555-16140608,16140811-16140893,16140980-16141085,16141157-16141363	AT4G33580.1  CDS  gene_syn A. THALIANA BETA CARBONIC ANHYDRASE 5, ATBCA5, BCA5, BETA CARBONIC ANHYDRASE 5, T16L1.70, T16L1_70  gene BCA5  go_component chloroplast|GO:0009507|18431481|IDA  go_process carbon utilization|GO:0015976||IEA  go_function carbonate dehydratase activity|GO:0004089||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component chloroplast|GO:0009507|17407539|IDA  go_process carbon utilization|GO:0015976||ISS  go_function carbonate dehydratase activity|GO:0004089||ISS  go_function zinc ion binding|GO:0008270||ISS  product carbonic anhydrase family protein / carbonate dehydratase family protein  note BETA CARBONIC ANHYDRASE 5 (BCA5); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: carbon utilization; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: carbonic anhydrase family protein / carbonate dehydratase family protein (TAIR:AT1G58180.3); Has 3333 Blast hits to 3319 proteins in 965 species: Archae - 37; Bacteria - 2353; Metazoa - 48; Fungi - 157; Plants - 230; Viruses - 0; Other Eukaryotes - 508 (source: NCBI BLink).  protein_id AT4G33580.1p  transcript_id AT4G33580.1  protein_id AT4G33580.1p  transcript_id AT4G33580.1  
At4g33585	chr4:016141778	0.0	C/16141778-16142257	AT4G33585.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 3225 Blast hits to 1948 proteins in 273 species: Archae - 4; Bacteria - 378; Metazoa - 952; Fungi - 195; Plants - 1055; Viruses - 203; Other Eukaryotes - 438 (source: NCBI BLink).  protein_id AT4G33585.1p  transcript_id AT4G33585.1  protein_id AT4G33585.1p  transcript_id AT4G33585.1  
At4g33590	chr4:016142585	0.0	C/16142585-16143985	AT4G33590.1  CDS  gene_syn T16L1.80, T16L1_80  product unknown protein  note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G33600.1); Has 69 Blast hits to 69 proteins in 19 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 14; Plants - 36; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT4G33590.1p  transcript_id AT4G33590.1  protein_id AT4G33590.1p  transcript_id AT4G33590.1  
At4g33600	chr4:016144452	0.0	C/16144452-16145864	AT4G33600.1  CDS  gene_syn T16L1.90, T16L1_90  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G33590.1); Has 75 Blast hits to 75 proteins in 27 species: Archae - 0; Bacteria - 4; Metazoa - 13; Fungi - 18; Plants - 30; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT4G33600.1p  transcript_id AT4G33600.1  protein_id AT4G33600.1p  transcript_id AT4G33600.1  
At4g33610	chr4:016146477	0.0	W/16146477-16146824	AT4G33610.1  CDS  gene_syn T16L1.100, T16L1_100  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT1G55990.1); Has 979 Blast hits to 593 proteins in 63 species: Archae - 0; Bacteria - 830; Metazoa - 48; Fungi - 4; Plants - 46; Viruses - 13; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT4G33610.1p  transcript_id AT4G33610.1  protein_id AT4G33610.1p  transcript_id AT4G33610.1  
At4g33620	chr4:016147692	0.0	W/16147692-16147866,16148032-16148091,16148221-16148270,16148362-16148452,16148546-16148592,16148777-16148974,16149052-16149127,16149316-16149424,16149852-16149905,16150061-16150192,16150378-16150578,16150654-16150709,16150771-16150885,16151282-16151369,16151569-16151688,16151986-16152339,16152428-16152853	AT4G33620.1  CDS  gene_syn T16L1.110, T16L1_110  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_component cellular_component|GO:0005575||ND  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product Ulp1 protease family protein  note Ulp1 protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: Ulp1 protease family protein (TAIR:AT1G09730.1); Has 1076 Blast hits to 958 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 633; Fungi - 185; Plants - 127; Viruses - 4; Other Eukaryotes - 127 (source: NCBI BLink).  protein_id AT4G33620.1p  transcript_id AT4G33620.1  protein_id AT4G33620.1p  transcript_id AT4G33620.1  
At4g33625	chr4:016154349	0.0	C/16154349-16154543,16154145-16154240,16154028-16154068,16153716-16153833,16153265-16153345,16153114-16153182	AT4G33625.2  CDS  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; Has 21 Blast hits to 21 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G33625.2p  transcript_id AT4G33625.2  protein_id AT4G33625.2p  transcript_id AT4G33625.2  
At4g33625	chr4:016154349	0.0	C/16154349-16154543,16154145-16154240,16154028-16154068,16153716-16153833,16153265-16153345,16153114-16153185	AT4G33625.1  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: cultured cell; Has 21 Blast hits to 21 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G33625.1p  transcript_id AT4G33625.1  protein_id AT4G33625.1p  transcript_id AT4G33625.1  
At4g33630	chr4:016155560	0.0	W/16155560-16155961,16156052-16156168,16156262-16156327,16156421-16156527,16156659-16156740,16156988-16157713,16157794-16157917,16158169-16158338,16158623-16158697,16158804-16158896,16159002-16159094	AT4G33630.1  CDS  gene_syn EX1, EXECUTER1, T16L1.120, T16L1_120  gene EX1  go_component thylakoid membrane|GO:0042651|17540731|IDA  go_process response to singlet oxygen|GO:0000304|17540731|IGI  product EX1 (EXECUTER1)  note EXECUTER1 (EX1); INVOLVED IN: response to singlet oxygen; LOCATED IN: thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27510.1); Has 263 Blast hits to 253 proteins in 71 species: Archae - 0; Bacteria - 6; Metazoa - 96; Fungi - 34; Plants - 52; Viruses - 5; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT4G33630.1p  transcript_id AT4G33630.1  protein_id AT4G33630.1p  transcript_id AT4G33630.1  
At4g33630	chr4:016155560	0.0	W/16155560-16155961,16156052-16156168,16156262-16156327,16156421-16156527,16156659-16156740,16156988-16157713,16157794-16157917,16158169-16158338,16158623-16158697,16158804-16158896,16159002-16159094	AT4G33630.2  CDS  gene_syn EX1, EXECUTER1, T16L1.120, T16L1_120  gene EX1  go_component thylakoid membrane|GO:0042651|17540731|IDA  go_process response to singlet oxygen|GO:0000304|17540731|IGI  product EX1 (EXECUTER1)  note EXECUTER1 (EX1); INVOLVED IN: response to singlet oxygen; LOCATED IN: thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27510.1); Has 263 Blast hits to 253 proteins in 71 species: Archae - 0; Bacteria - 6; Metazoa - 96; Fungi - 34; Plants - 52; Viruses - 5; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT4G33630.2p  transcript_id AT4G33630.2  protein_id AT4G33630.2p  transcript_id AT4G33630.2  
At4g33640	chr4:016160131	0.0	C/16160131-16160211,16159727-16159933	AT4G33640.1  CDS  gene_syn T16L1.130, T16L1_130  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 141 Blast hits to 141 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT4G33640.1p  transcript_id AT4G33640.1  protein_id AT4G33640.1p  transcript_id AT4G33640.1  
At4g33650	chr4:016161073	0.0	W/16161073-16161486,16161572-16161854,16161947-16161975,16162071-16162172,16162472-16162540,16162628-16162687,16162977-16163090,16163478-16163526,16163625-16163734,16164035-16164127,16164267-16164359,16164428-16164565,16164758-16164871,16164963-16165058,16165201-16165240,16165419-16165567,16165656-16165802,16166027-16166079,16166164-16166263,16166414-16166587	AT4G33650.1  CDS  gene_syn ADL2, ADL2A, ARABIDOPSIS DYNAMIN-LIKE 2, DRP3A, DYNAMIN-RELATED PROTEIN 3A, T16L1.140, T16L1_140  gene DRP3A  function Encodes a protein with high sequence similarity to the dynamin superfamily. Among those members ADL2 was most closely related to Dnm1p of yeast and likely a member of the Vps1p subfamily. Widely expressed in various tissues with highest expression in flower tissues. Localizes to the chloroplast, mitochondrion and peroxisome. Involved in peroxisome and mitochondria fission in combination with DRP3B.  go_component mitochondrion|GO:0005739|19144001|IDA  go_component peroxisome|GO:0005777|19144001|IDA  go_component cytosol|GO:0005829|18539750|IDA  go_component chloroplast|GO:0009507|9747851|IDA  go_component chloroplast envelope|GO:0009941|11706203|IDA  go_component membrane|GO:0016020|11706203|IDA  go_process mitochondrial fission|GO:0000266|19144001|IGI  go_process chloroplast organization|GO:0009658||NAS  go_process post-embryonic development|GO:0009791|19144001|IGI  go_process peroxisome fission|GO:0016559|18539750|IMP  go_process peroxisome fission|GO:0016559|19144001|IMP  go_function GTPase activity|GO:0003924|11706203|IDA  go_function GTPase activity|GO:0003924||ISS  go_function GTP binding|GO:0005525||ISS  go_function phosphoinositide binding|GO:0035091|11706203|IDA  product DRP3A (DYNAMIN-RELATED PROTEIN 3A); GTP binding / GTPase/ phosphoinositide binding  note DYNAMIN-RELATED PROTEIN 3A (DRP3A); FUNCTIONS IN: phosphoinositide binding, GTP binding, GTPase activity; INVOLVED IN: post-embryonic development, peroxisome fission, chloroplast organization, mitochondrial fission; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130), Dynamin, GTPase region (InterPro:IPR001401), Dynamin central region (InterPro:IPR000375); BEST Arabidopsis thaliana protein match is: dynamin-like protein 2b (ADL2b) (TAIR:AT2G14120.1); Has 2332 Blast hits to 2095 proteins in 247 species: Archae - 0; Bacteria - 8; Metazoa - 1140; Fungi - 552; Plants - 284; Viruses - 0; Other Eukaryotes - 348 (source: NCBI BLink).  protein_id AT4G33650.1p  transcript_id AT4G33650.1  protein_id AT4G33650.1p  transcript_id AT4G33650.1  
At4g33660	chr4:016167665	0.0	C/16167665-16167822,16167470-16167542	AT4G33660.1  CDS  gene_syn T16L1.2  product unknown protein  note unknown protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 11290 Blast hits to 4470 proteins in 379 species: Archae - 8; Bacteria - 927; Metazoa - 3900; Fungi - 939; Plants - 2836; Viruses - 912; Other Eukaryotes - 1768 (source: NCBI BLink).  protein_id AT4G33660.1p  transcript_id AT4G33660.1  protein_id AT4G33660.1p  transcript_id AT4G33660.1  
At4g33666	chr4:016169167	0.0	W/16169167-16169406	AT4G33666.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G33666.1p  transcript_id AT4G33666.1  protein_id AT4G33666.1p  transcript_id AT4G33666.1  
At4g33670	chr4:016171277	0.0	C/16171277-16171446,16170886-16171114,16170502-16170801,16169891-16170019,16169670-16169801	AT4G33670.1  CDS  gene_syn T16L1.160, T16L1_160  function Encodes a L-galactose dehydrogenase, involved in ascorbate biosynthesis  go_process L-ascorbic acid biosynthetic process|GO:0019853|12047629|IMP  go_function aldo-keto reductase activity|GO:0004033||ISS  go_function L-galactose dehydrogenase activity|GO:0010349|12047629|IDA  product L-galactose dehydrogenase (L-GalDH)  note L-galactose dehydrogenase (L-GalDH); FUNCTIONS IN: L-galactose dehydrogenase activity, aldo-keto reductase activity; INVOLVED IN: L-ascorbic acid biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395); BEST Arabidopsis thaliana protein match is: oxidoreductase (TAIR:AT1G60750.1); Has 16730 Blast hits to 16723 proteins in 1372 species: Archae - 323; Bacteria - 10248; Metazoa - 927; Fungi - 1149; Plants - 444; Viruses - 0; Other Eukaryotes - 3639 (source: NCBI BLink).  protein_id AT4G33670.1p  transcript_id AT4G33670.1  protein_id AT4G33670.1p  transcript_id AT4G33670.1  
At4g33680	chr4:016174548	0.0	C/16174548-16174630,16174233-16174309,16174047-16174114,16173735-16173851,16173388-16173450,16173071-16173175,16172935-16172985,16172513-16172833,16172231-16172437,16171847-16172140	AT4G33680.1  CDS  gene_syn ABERRANT GROWTH AND DEATH 2, AGD2, T16L1.170, T16L1_170  gene AGD2  function Involved in disease resistance against Pseudomonas syringae. mutants have elevated SA levels, a low level of spontaneous cell death, callose deposition, and enlarged cells in leaves. genetically maps on chr 4 between L23H3 and nga1139.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast|GO:0009507|14729919|IDA  go_component chloroplast stroma|GO:0009570|16361515|IDA  go_process lysine biosynthetic process via diaminopimelate|GO:0009089|16361515|IGI  go_process systemic acquired resistance, salicylic acid mediated signaling pathway|GO:0009862|11532166|IMP  go_function transaminase activity|GO:0008483|14729919|IDA  go_function transaminase activity|GO:0008483||ISS  go_function L,L-diaminopimelate aminotransferase activity|GO:0010285|16361515|IDA  product AGD2 (ABERRANT GROWTH AND DEATH 2); L,L-diaminopimelate aminotransferase/ transaminase  note ABERRANT GROWTH AND DEATH 2 (AGD2); FUNCTIONS IN: transaminase activity, L,L-diaminopimelate aminotransferase activity; INVOLVED IN: lysine biosynthetic process via diaminopimelate, systemic acquired resistance, salicylic acid mediated signaling pathway; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: ALD1 (AGD2-LIKE DEFENSE RESPONSE PROTEIN1); catalytic/ pyridoxal phosphate binding / transaminase/ transferase, transferring nitrogenous groups (TAIR:AT2G13810.1); Has 19189 Blast hits to 19189 proteins in 1590 species: Archae - 561; Bacteria - 10820; Metazoa - 383; Fungi - 313; Plants - 307; Viruses - 0; Other Eukaryotes - 6805 (source: NCBI BLink).  protein_id AT4G33680.1p  transcript_id AT4G33680.1  protein_id AT4G33680.1p  transcript_id AT4G33680.1  
At4g33690	chr4:016175198	0.0	W/16175198-16175366,16175461-16175743,16175849-16176137	AT4G33690.1  CDS  gene_syn T16L1.180, T16L1_180  go_component chloroplast|GO:0009507|15028209|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; Has 499 Blast hits to 464 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 283; Fungi - 48; Plants - 38; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink).  protein_id AT4G33690.1p  transcript_id AT4G33690.1  protein_id AT4G33690.1p  transcript_id AT4G33690.1  
At4g33700	chr4:016179011	0.0	C/16179011-16179188,16178428-16178504,16178257-16178340,16178008-16178121,16177829-16177915,16177603-16177742,16177406-16177493,16177206-16177279,16177017-16177132,16176666-16176937,16176547-16176591	AT4G33700.1  CDS  gene_syn T16L1.190, T16L1_190  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product CBS domain-containing protein  note CBS domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein (TAIR:AT2G14520.1); Has 8185 Blast hits to 8163 proteins in 1404 species: Archae - 64; Bacteria - 5471; Metazoa - 234; Fungi - 109; Plants - 119; Viruses - 0; Other Eukaryotes - 2188 (source: NCBI BLink).  protein_id AT4G33700.1p  transcript_id AT4G33700.1  protein_id AT4G33700.1p  transcript_id AT4G33700.1  
At4g33710	chr4:016181065	0.0	W/16181065-16181565	AT4G33710.1  CDS  gene_syn T16L1.200, T16L1_200  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_component extracellular region|GO:0005576||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pathogenesis-related protein, putative  note pathogenesis-related protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, extracellular region; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related, conserved site (InterPro:IPR018244), Allergen V5/Tpx-1 related (InterPro:IPR001283), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26130.1); Has 2147 Blast hits to 2076 proteins in 282 species: Archae - 0; Bacteria - 47; Metazoa - 1256; Fungi - 207; Plants - 591; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT4G33710.1p  transcript_id AT4G33710.1  protein_id AT4G33710.1p  transcript_id AT4G33710.1  
At4g33720	chr4:016182813	0.0	W/16182813-16183304	AT4G33720.1  CDS  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_component extracellular region|GO:0005576||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pathogenesis-related protein, putative  note pathogenesis-related protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related, conserved site (InterPro:IPR018244), Allergen V5/Tpx-1 related (InterPro:IPR001283), Ves allergen (InterPro:IPR002413), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: ATPRB1 (TAIR:AT2G14580.1); Has 2321 Blast hits to 2229 proteins in 292 species: Archae - 0; Bacteria - 50; Metazoa - 1378; Fungi - 222; Plants - 614; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT4G33720.1p  transcript_id AT4G33720.1  protein_id AT4G33720.1p  transcript_id AT4G33720.1  
At4g33730	chr4:016185098	0.0	W/16185098-16185616	AT4G33730.1  CDS  gene_syn T16L1.220, T16L1_220  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_component extracellular region|GO:0005576||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pathogenesis-related protein, putative  note pathogenesis-related protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related, conserved site (InterPro:IPR018244), Allergen V5/Tpx-1 related (InterPro:IPR001283), Ves allergen (InterPro:IPR002413), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: PR1 (PATHOGENESIS-RELATED GENE 1) (TAIR:AT2G14610.1); Has 2323 Blast hits to 2231 proteins in 286 species: Archae - 0; Bacteria - 50; Metazoa - 1389; Fungi - 222; Plants - 605; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT4G33730.1p  transcript_id AT4G33730.1  protein_id AT4G33730.1p  transcript_id AT4G33730.1  
At4g33740	chr4:016187384	0.0	W/16187384-16188802	AT4G33740.1  CDS  gene_syn T16L1.230, T16L1_230  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37820.1); Has 90465 Blast hits to 37462 proteins in 1542 species: Archae - 233; Bacteria - 6351; Metazoa - 34258; Fungi - 9821; Plants - 3853; Viruses - 1212; Other Eukaryotes - 34737 (source: NCBI BLink).  protein_id AT4G33740.1p  transcript_id AT4G33740.1  protein_id AT4G33740.1p  transcript_id AT4G33740.1  
At4g33740	chr4:016187384	0.0	W/16187384-16188802	AT4G33740.2  CDS  gene_syn T16L1.230, T16L1_230  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37820.1); Has 90465 Blast hits to 37462 proteins in 1542 species: Archae - 233; Bacteria - 6351; Metazoa - 34258; Fungi - 9821; Plants - 3853; Viruses - 1212; Other Eukaryotes - 34737 (source: NCBI BLink).  protein_id AT4G33740.2p  transcript_id AT4G33740.2  protein_id AT4G33740.2p  transcript_id AT4G33740.2  
At4g33740	chr4:016187384	0.0	W/16187384-16188802	AT4G33740.3  CDS  gene_syn T16L1.230, T16L1_230  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37820.1).  protein_id AT4G33740.3p  transcript_id AT4G33740.3  protein_id AT4G33740.3p  transcript_id AT4G33740.3  
At4g33760	chr4:016192904	0.0	C/16192904-16193260,16192435-16192578,16192248-16192357,16192037-16192148,16191876-16191947,16191671-16191762,16191406-16191526,16191069-16191191,16190672-16190867,16190367-16190554,16190212-16190283,16190026-16190124,16189869-16189949,16189702-16189759,16189285-16189454	AT4G33760.1  CDS  gene_syn T16L1.250, T16L1_250  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process translation|GO:0006412||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_process aspartyl-tRNA aminoacylation|GO:0006422||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function aspartate-tRNA ligase activity|GO:0004815||IEA  go_function ATP binding|GO:0005524||IEA  go_component cytoplasm|GO:0005737||ISS  go_component mitochondrion|GO:0005739|16251277|IDA  go_component chloroplast|GO:0009507|16251277|IDA  go_process tRNA aminoacylation for protein translation|GO:0006418||ISS  go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS  go_function ATP binding|GO:0005524||ISS  product tRNA synthetase class II (D, K and N) family protein  note tRNA synthetase class II (D, K and N) family protein; FUNCTIONS IN: aspartate-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, nucleic acid binding, ATP binding; INVOLVED IN: aspartyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: mitochondrion, chloroplast, membrane, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Aspartyl-tRNA synthetase, class IIb (InterPro:IPR002312), Aminoacyl-tRNA synthetase, class II, conserved region (InterPro:IPR006195), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type (InterPro:IPR004524), Aminoacyl-tRNA synthetase, class II (D, K and N) (InterPro:IPR004364), Aminoacyl-tRNA synthetase, class II (D, K and N)-like (InterPro:IPR018150), Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type, C-terminal (InterPro:IPR018153), GAD (InterPro:IPR004115); BEST Arabidopsis thaliana protein match is: OVA5 (OVULE ABORTION 5); ATP binding / aminoacyl-tRNA ligase/ lysine-tRNA ligase/ nucleic acid binding / nucleotide binding (TAIR:AT3G13490.1); Has 20510 Blast hits to 15912 proteins in 1700 species: Archae - 534; Bacteria - 11175; Metazoa - 763; Fungi - 675; Plants - 169; Viruses - 0; Other Eukaryotes - 7194 (source: NCBI BLink).  protein_id AT4G33760.1p  transcript_id AT4G33760.1  protein_id AT4G33760.1p  transcript_id AT4G33760.1  
At4g33770	chr4:016195122	0.0	C/16195122-16195238,16195006-16195038,16194667-16194787,16194479-16194571,16194266-16194385,16193945-16194177,16193774-16193858,16193589-16193683	AT4G33770.2  CDS  gene_syn T16L1.260, T16L1_260  go_component intracellular|GO:0005622||IEA  go_process inositol trisphosphate metabolic process|GO:0032957||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function ATP binding|GO:0005524||IEA  go_function inositol-1,3,4-trisphosphate 5/6-kinase activity|GO:0035300||IEA  go_function inositol tetrakisphosphate 1-kinase activity|GO:0047325||IEA  go_function inositol or phosphatidylinositol kinase activity|GO:0004428||ISS  product inositol 1,3,4-trisphosphate 5/6-kinase family protein  note inositol 1,3,4-trisphosphate 5/6-kinase family protein; FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, magnesium ion binding, inositol-1,3,4-trisphosphate 5/6-kinase activity, inositol tetrakisphosphate 1-kinase activity, ATP binding; INVOLVED IN: inositol trisphosphate metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Inositol-tetrakisphosphate 1-kinase (InterPro:IPR017427), Inositol 1, 3, 4-trisphosphate 56-kinase (InterPro:IPR008656); BEST Arabidopsis thaliana protein match is: inositol 1,3,4-trisphosphate 5/6-kinase family protein (TAIR:AT4G08170.2); Has 280 Blast hits to 279 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 78; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT4G33770.2p  transcript_id AT4G33770.2  protein_id AT4G33770.2p  transcript_id AT4G33770.2  
At4g33770	chr4:016195929	0.0	C/16195929-16196242,16195122-16195203,16195006-16195038,16194667-16194787,16194479-16194571,16194266-16194385,16193945-16194177,16193774-16193858,16193589-16193683	AT4G33770.1  CDS  gene_syn T16L1.260, T16L1_260  go_component intracellular|GO:0005622||IEA  go_process inositol trisphosphate metabolic process|GO:0032957||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function ATP binding|GO:0005524||IEA  go_function inositol-1,3,4-trisphosphate 5/6-kinase activity|GO:0035300||IEA  go_function inositol tetrakisphosphate 1-kinase activity|GO:0047325||IEA  go_function inositol or phosphatidylinositol kinase activity|GO:0004428||ISS  product inositol 1,3,4-trisphosphate 5/6-kinase family protein  note inositol 1,3,4-trisphosphate 5/6-kinase family protein; FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, magnesium ion binding, inositol-1,3,4-trisphosphate 5/6-kinase activity, inositol tetrakisphosphate 1-kinase activity, ATP binding; INVOLVED IN: inositol trisphosphate metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Inositol-tetrakisphosphate 1-kinase (InterPro:IPR017427), Inositol 1, 3, 4-trisphosphate 56-kinase (InterPro:IPR008656); BEST Arabidopsis thaliana protein match is: inositol 1,3,4-trisphosphate 5/6-kinase family protein (TAIR:AT4G08170.2); Has 282 Blast hits to 281 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 78; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT4G33770.1p  transcript_id AT4G33770.1  protein_id AT4G33770.1p  transcript_id AT4G33770.1  
At4g33780	chr4:016203456	0.0	C/16203456-16203617,16203150-16203377,16202913-16202978,16202174-16202329	AT4G33780.1  CDS  gene_syn T16L1.270, T16L1_270  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: SHW1 (SHORT HYPOCOTYL IN WHITE LIGHT1) (TAIR:AT1G69935.1); Has 20 Blast hits to 20 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G33780.1p  transcript_id AT4G33780.1  protein_id AT4G33780.1p  transcript_id AT4G33780.1  
At4g33790	chr4:016207801	0.0	C/16207801-16207891,16207419-16207522,16206605-16206807,16206388-16206488,16205595-16205787,16205350-16205511,16205143-16205224,16204789-16205055,16204589-16204716,16204325-16204475	AT4G33790.1  CDS  gene_syn CER4, ECERIFERUM 4, FAR3, FATTY ACID REDUCTASE 3, G7  gene CER4  function Encodes an alcohol-forming fatty acyl-CoA reductase, involved in cuticular wax biosynthesis. Lines carrying recessive mutations are deficient in primary alcohol and have glossy stem surfaces.  go_process wax biosynthetic process|GO:0010025||IMP  go_component endoplasmic reticulum|GO:0005783|16980563|IDA  go_process microsporogenesis|GO:0009556||ISS  go_process wax biosynthetic process|GO:0010025|16980563|IMP  go_function oxidoreductase activity, acting on the CH-CH group of donors|GO:0016627||ISS  go_function fatty acyl-CoA reductase (alcohol-forming) activity|GO:0080019|16980563|IMP  go_function fatty acyl-CoA reductase (alcohol-forming) activity|GO:0080019|19062129|IDA  product CER4 (ECERIFERUM 4); fatty acyl-CoA reductase (alcohol-forming)/ oxidoreductase, acting on the CH-CH group of donors  note ECERIFERUM 4 (CER4); FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors, fatty acyl-CoA reductase (alcohol-forming) activity; INVOLVED IN: microsporogenesis, wax biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Male sterility (InterPro:IPR004262), NAD(P)-binding (InterPro:IPR016040), Male sterility, NAD-binding (InterPro:IPR013120); BEST Arabidopsis thaliana protein match is: FAR1 (FATTY ACID REDUCTASE 1); fatty acyl-CoA reductase (alcohol-forming)/ oxidoreductase, acting on the CH-CH group of donors (TAIR:AT5G22500.1); Has 1086 Blast hits to 1079 proteins in 118 species: Archae - 0; Bacteria - 69; Metazoa - 821; Fungi - 13; Plants - 118; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT4G33790.1p  transcript_id AT4G33790.1  protein_id AT4G33790.1p  transcript_id AT4G33790.1  
At4g33800	chr4:016210948	0.0	C/16210948-16211307,16210561-16210656,16210404-16210460	AT4G33800.1  CDS  gene_syn T16L1.290, T16L1_290  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; Has 27 Blast hits to 27 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G33800.1p  transcript_id AT4G33800.1  protein_id AT4G33800.1p  transcript_id AT4G33800.1  
At4g33810	chr4:016215435	0.0	C/16215435-16215594,16215035-16215225,16214879-16214977,16213776-16214570,16213324-16213689	AT4G33810.1  CDS  gene_syn T16L1.300, T16L1_300  go_component cell wall|GO:0005618|15593128|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 10 protein  note glycosyl hydrolase family 10 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 10 protein (TAIR:AT4G33820.1); Has 1325 Blast hits to 1318 proteins in 272 species: Archae - 0; Bacteria - 659; Metazoa - 27; Fungi - 280; Plants - 160; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink).  protein_id AT4G33810.1p  transcript_id AT4G33810.1  protein_id AT4G33810.1p  transcript_id AT4G33810.1  
At4g33820	chr4:016219402	0.0	C/16219402-16219515,16219120-16219285,16218560-16218729,16218379-16218477,16217469-16218263,16217010-16217378	AT4G33820.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 10 protein  note glycosyl hydrolase family 10 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 10 protein (TAIR:AT4G33810.1); Has 1353 Blast hits to 1346 proteins in 274 species: Archae - 0; Bacteria - 668; Metazoa - 27; Fungi - 278; Plants - 160; Viruses - 0; Other Eukaryotes - 220 (source: NCBI BLink).  protein_id AT4G33820.1p  transcript_id AT4G33820.1  protein_id AT4G33820.1p  transcript_id AT4G33820.1  
At4g33830	chr4:016222625	0.0	C/16222625-16222676,16222385-16222431,16222092-16222311,16221847-16222010,16220842-16221729,16220324-16220683	AT4G33830.1  CDS  gene_syn F17I5.20, F17I5_20  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Carbohydrate-binding, CenC-like (InterPro:IPR003305), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 10 protein (TAIR:AT4G33840.1); Has 135 Blast hits to 135 proteins in 35 species: Archae - 0; Bacteria - 87; Metazoa - 19; Fungi - 13; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G33830.1p  transcript_id AT4G33830.1  protein_id AT4G33830.1p  transcript_id AT4G33830.1  
At4g33840	chr4:016226047	0.0	C/16226047-16226095,16225720-16225766,16225395-16225614,16225151-16225314,16224146-16225033,16223694-16224056	AT4G33840.1  CDS  gene_syn F17I5.30, F17I5_30  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 10 protein  note glycosyl hydrolase family 10 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Carbohydrate-binding, CenC-like (InterPro:IPR003305), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT4G33830.1); Has 1332 Blast hits to 1327 proteins in 273 species: Archae - 0; Bacteria - 659; Metazoa - 27; Fungi - 280; Plants - 163; Viruses - 0; Other Eukaryotes - 203 (source: NCBI BLink).  protein_id AT4G33840.1p  transcript_id AT4G33840.1  protein_id AT4G33840.1p  transcript_id AT4G33840.1  
At4g33850	chr4:016227076	0.0	C/16227076-16229424	AT4G33850.1  pseudogenic_transcript  pseudo  gene_syn F17I5.40, F17I5_40  function Pseudogene of AT4G33850; glycosyl hydrolase family 10 protein  note similar to glycosyl hydrolase family 10 protein [Arabidopsis thaliana] (TAIR:AT4G33860.1); similar to endoxylanase [Carica papaya] (GB:AAN10199.1); contains InterPro domain Glycoside hydrolase, family 10; (InterPro:IPR001000); contains InterPro domain Glycoside hydrolase, catalytic core; (InterPro:IPR013781)  
At4g33860	chr4:016232261	0.0	C/16232261-16232309,16232126-16232172,16231818-16232037,16231566-16231729,16230588-16231475,16230142-16230504	AT4G33860.1  CDS  gene_syn F17I5.50, F17I5_50  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 10 protein  note glycosyl hydrolase family 10 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Carbohydrate-binding, CenC-like (InterPro:IPR003305), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Galactose-binding like (InterPro:IPR008979), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 10 protein (TAIR:AT4G33840.1); Has 1329 Blast hits to 1324 proteins in 269 species: Archae - 0; Bacteria - 658; Metazoa - 27; Fungi - 276; Plants - 163; Viruses - 0; Other Eukaryotes - 205 (source: NCBI BLink).  protein_id AT4G33860.1p  transcript_id AT4G33860.1  protein_id AT4G33860.1p  transcript_id AT4G33860.1  
At4g33865	chr4:016234053	0.0	C/16234053-16234114,16233503-16233602,16233395-16233403	AT4G33865.1  CDS  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S29 (RPS29C)  note 40S ribosomal protein S29 (RPS29C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S14 (InterPro:IPR001209); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S29 (RPS29B) (TAIR:AT3G44010.1); Has 694 Blast hits to 694 proteins in 260 species: Archae - 152; Bacteria - 0; Metazoa - 229; Fungi - 88; Plants - 102; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).  protein_id AT4G33865.1p  transcript_id AT4G33865.1  protein_id AT4G33865.1p  transcript_id AT4G33865.1  
At4g33870	chr4:016236154	0.0	C/16236154-16236492,16235538-16235761,16235322-16235443,16235010-16235190,16234670-16234880	AT4G33870.1  CDS  gene_syn F17I5.60, F17I5_60  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: electron carrier/ heme binding / peroxidase (TAIR:AT2G41480.1); Has 2480 Blast hits to 2471 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 39; Plants - 2419; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT4G33870.1p  transcript_id AT4G33870.1  protein_id AT4G33870.1p  transcript_id AT4G33870.1  
At4g33880	chr4:016240513	0.0	C/16240513-16241052,16240114-16240419,16239940-16240005,16239743-16239808,16239566-16239646	AT4G33880.1  CDS  gene_syn F17I5.70, F17I5_70  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix protein / bHLH protein (TAIR:AT2G14760.1); Has 1879 Blast hits to 1802 proteins in 134 species: Archae - 0; Bacteria - 9; Metazoa - 175; Fungi - 34; Plants - 1499; Viruses - 0; Other Eukaryotes - 162 (source: NCBI BLink).  protein_id AT4G33880.1p  transcript_id AT4G33880.1  protein_id AT4G33880.1p  transcript_id AT4G33880.1  
At4g33890	chr4:016250057	0.0	W/16250057-16251085	AT4G33890.1  CDS  gene_syn F17I5.80, F17I5_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14850.1); Has 70 Blast hits to 68 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 66; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G33890.1p  transcript_id AT4G33890.1  protein_id AT4G33890.1p  transcript_id AT4G33890.1  
At4g33890	chr4:016250057	0.0	W/16250057-16251085	AT4G33890.2  CDS  gene_syn F17I5.80, F17I5_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14850.1); Has 70 Blast hits to 68 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 66; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G33890.2p  transcript_id AT4G33890.2  protein_id AT4G33890.2p  transcript_id AT4G33890.2  
At4g33900	chr4:016251572	0.0	C/16251572-16252711	AT4G33900.1  CDS  go_component cellular_component|GO:0005575||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G23580.1); Has 1904 Blast hits to 1641 proteins in 100 species: Archae - 2; Bacteria - 45; Metazoa - 1150; Fungi - 0; Plants - 636; Viruses - 7; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT4G33900.1p  transcript_id AT4G33900.1  protein_id AT4G33900.1p  transcript_id AT4G33900.1  
At4g33905	chr4:016255251	0.0	C/16255251-16255592,16254696-16254924,16254306-16254430,16254065-16254154	AT4G33905.1  CDS  go_component integral to membrane|GO:0016021||IEA  go_component peroxisomal membrane|GO:0005778||ISS  go_process biological_process|GO:0008150||ND  product peroxisomal membrane protein 22 kDa, putative  note peroxisomal membrane protein 22 kDa, putative; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, peroxisomal membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Mpv17/PMP22 (InterPro:IPR007248); BEST Arabidopsis thaliana protein match is: peroxisomal membrane protein 22 kDa, putative (TAIR:AT2G14860.1); Has 977 Blast hits to 977 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 510; Fungi - 224; Plants - 164; Viruses - 8; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT4G33905.1p  transcript_id AT4G33905.1  protein_id AT4G33905.1p  transcript_id AT4G33905.1  
At4g33910	chr4:016258501	0.0	C/16258501-16258614,16258278-16258400,16257890-16258047,16257705-16257807,16257474-16257569,16257339-16257404,16257133-16257252,16256943-16257029	AT4G33910.1  CDS  gene_syn F17I5.100, F17I5_100  go_component endomembrane system|GO:0012505||IEA  go_process protein metabolic process|GO:0019538||IEA  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||IEA  go_process peptidyl-proline hydroxylation to 4-hydroxy-L-proline|GO:0018401||ISS  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding; INVOLVED IN: protein metabolic process, peptidyl-proline hydroxylation to 4-hydroxy-L-proline; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT2G23096.1); Has 1963 Blast hits to 1959 proteins in 230 species: Archae - 0; Bacteria - 229; Metazoa - 904; Fungi - 50; Plants - 220; Viruses - 14; Other Eukaryotes - 546 (source: NCBI BLink).  protein_id AT4G33910.1p  transcript_id AT4G33910.1  protein_id AT4G33910.1p  transcript_id AT4G33910.1  
At4g33920	chr4:016260876	0.0	W/16260876-16261134,16261391-16261767,16262107-16262343,16262434-16262703	AT4G33920.1  CDS  gene_syn F17I5.110, F17I5_110  go_component mitochondrion|GO:0005739||IEA  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C family protein / PP2C family protein  note protein phosphatase 2C family protein / PP2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: mitochondrion, protein serine/threonine phosphatase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT3G51370.1); Has 3521 Blast hits to 3519 proteins in 216 species: Archae - 0; Bacteria - 7; Metazoa - 1157; Fungi - 386; Plants - 1254; Viruses - 3; Other Eukaryotes - 714 (source: NCBI BLink).  protein_id AT4G33920.1p  transcript_id AT4G33920.1  protein_id AT4G33920.1p  transcript_id AT4G33920.1  
At4g33925	chr4:016263292	0.0	W/16263292-16263352,16263438-16263459,16263575-16263680,16263762-16263869,16263963-16264022,16264092-16264109	AT4G33925.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages.  protein_id AT4G33925.2p  transcript_id AT4G33925.2  protein_id AT4G33925.2p  transcript_id AT4G33925.2  
At4g33925	chr4:016263292	0.0	W/16263292-16263352,16263438-16263459,16263575-16263680,16263762-16263869,16263963-16264064	AT4G33925.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; Has 70 Blast hits to 70 proteins in 36 species: Archae - 8; Bacteria - 0; Metazoa - 38; Fungi - 2; Plants - 15; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT4G33925.1p  transcript_id AT4G33925.1  protein_id AT4G33925.1p  transcript_id AT4G33925.1  
At4g33930	chr4:016264389	0.0	C/16264389-16265420	AT4G33930.1  CDS  gene_syn F17I5.120, F17I5_120  function Encodes a protein with 14.6% glycine residues, similar to hyphally regulated protein from Candida albicans, PIR2:S58135  go_component endomembrane system|GO:0012505||IEA  product glycine-rich protein  note glycine-rich protein; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G34300.1); Has 78959 Blast hits to 21641 proteins in 1249 species: Archae - 139; Bacteria - 19982; Metazoa - 19698; Fungi - 5965; Plants - 3387; Viruses - 516; Other Eukaryotes - 29272 (source: NCBI BLink).  protein_id AT4G33930.1p  transcript_id AT4G33930.1  protein_id AT4G33930.1p  transcript_id AT4G33930.1  
At4g33940	chr4:016266085	0.0	W/16266085-16266367,16266662-16266858,16266985-16267083,16267293-16267344,16267455-16267612	AT4G33940.1  CDS  gene_syn F17I5.1  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process response to chitin|GO:0010200|17722694|IEP  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G72175.1); Has 646 Blast hits to 644 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 493; Fungi - 31; Plants - 59; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT4G33940.1p  transcript_id AT4G33940.1  protein_id AT4G33940.1p  transcript_id AT4G33940.1  
At4g33945	chr4:016268119	0.0	W/16268119-16268254,16268353-16268664,16268745-16269028,16269202-16269330,16269417-16269539,16269792-16269899,16270118-16270296,16270391-16270514	AT4G33945.1  CDS  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product armadillo/beta-catenin repeat family protein  note armadillo/beta-catenin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); Has 252 Blast hits to 236 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 114; Fungi - 5; Plants - 68; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT4G33945.1p  transcript_id AT4G33945.1  protein_id AT4G33945.1p  transcript_id AT4G33945.1  
At4g33950	chr4:016272364	0.0	W/16272364-16272534,16272846-16272920,16273016-16273117,16273202-16273255,16273340-16273432,16273502-16273594,16273850-16273954,16274060-16274158,16274271-16274469,16274560-16274657	AT4G33950.1  CDS  gene_syn F17I5.140, F17I5_140, OPEN STOMATA 1, OST1, P44, SNF1-RELATED PROTEIN KINASE 2.6, SNRK2-6, SNRK2.6, SRK2E, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6  gene OST1  function Encodes calcium-independent ABA-activated protein kinase, a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Mutations disrupted ABA induction of stomatal closure as well as ABA inhibition of light-induced stomatal opening. However, regulation of stomatal opening/closing by light or CO(2) is not affected in these mutants. May act in the interval between ABA perception and reactive oxygen species production in the ABA signalling network.  go_component cytosol|GO:0005829|18433157|IDA  go_process oxygen and reactive oxygen species metabolic process|GO:0006800|15064385|IMP  go_process response to osmotic stress|GO:0006970|15292193|IDA  go_process response to cold|GO:0009409|16365038|IDA  go_process response to water deprivation|GO:0009414|12047634|IMP  go_process response to water deprivation|GO:0009414|12514244|IMP  go_process response to water deprivation|GO:0009414|16365038|IDA  go_process response to water deprivation|GO:0009414|16682349|IMP  go_process response to salt stress|GO:0009651|15292193|IDA  go_process response to salt stress|GO:0009651|16365038|IDA  go_process response to abscisic acid stimulus|GO:0009737|12047634|IMP  go_process response to abscisic acid stimulus|GO:0009737|12514244|IMP  go_process response to abscisic acid stimulus|GO:0009737|15064385|IMP  go_process response to abscisic acid stimulus|GO:0009737|15292193|IDA  go_process response to abscisic acid stimulus|GO:0009737|16365038|IDA  go_process abscisic acid mediated signaling|GO:0009738|12514244|TAS  go_process stomatal movement|GO:0010118|16959575|IMP  go_process regulation of stomatal movement|GO:0010119|12047634|IMP  go_process regulation of stomatal movement|GO:0010119|12514244|IMP  go_process regulation of stomatal movement|GO:0010119|15064385|IMP  go_process defense response to bacterium|GO:0042742|16959575|IMP  go_function protein kinase activity|GO:0004672|12468729|IDA  go_function protein kinase activity|GO:0004672|12514244|TAS  go_function calcium-dependent protein serine/threonine kinase activity|GO:0009931|12468729|ISS  go_function kinase activity|GO:0016301|15292193|IDA  go_function kinase activity|GO:0016301||ISS  product OST1 (OPEN STOMATA 1); calcium-dependent protein serine/threonine kinase/ kinase/ protein kinase  note OPEN STOMATA 1 (OST1); FUNCTIONS IN: calcium-dependent protein serine/threonine kinase activity, protein kinase activity, kinase activity; INVOLVED IN: in 10 processes; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), Plant protein serine/threonine kinase-like (InterPro:IPR015740); BEST Arabidopsis thaliana protein match is: SNRK2.3 (SUCROSE NONFERMENTING 1(SNF1)-RELATED PROTEIN KINASE 2.3); kinase/ protein kinase (TAIR:AT5G66880.1); Has 85444 Blast hits to 84060 proteins in 1999 species: Archae - 53; Bacteria - 7627; Metazoa - 36889; Fungi - 8298; Plants - 15395; Viruses - 459; Other Eukaryotes - 16723 (source: NCBI BLink).  protein_id AT4G33950.1p  transcript_id AT4G33950.1  protein_id AT4G33950.1p  transcript_id AT4G33950.1  
At4g33950	chr4:016272819	0.0	W/16272819-16272920,16273016-16273117,16273202-16273255,16273340-16273432,16273502-16273594,16273850-16273954,16274060-16274158,16274271-16274469,16274560-16274657	AT4G33950.2  CDS  gene_syn F17I5.140, F17I5_140, OPEN STOMATA 1, OST1, P44, SNF1-RELATED PROTEIN KINASE 2.6, SNRK2-6, SNRK2.6, SRK2E, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6  gene OST1  function Encodes calcium-independent ABA-activated protein kinase, a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Mutations disrupted ABA induction of stomatal closure as well as ABA inhibition of light-induced stomatal opening. However, regulation of stomatal opening/closing by light or CO(2) is not affected in these mutants. May act in the interval between ABA perception and reactive oxygen species production in the ABA signalling network.  go_component cytosol|GO:0005829|18433157|IDA  go_process oxygen and reactive oxygen species metabolic process|GO:0006800|15064385|IMP  go_process response to osmotic stress|GO:0006970|15292193|IDA  go_process response to cold|GO:0009409|16365038|IDA  go_process response to water deprivation|GO:0009414|12047634|IMP  go_process response to water deprivation|GO:0009414|12514244|IMP  go_process response to water deprivation|GO:0009414|16365038|IDA  go_process response to water deprivation|GO:0009414|16682349|IMP  go_process response to salt stress|GO:0009651|15292193|IDA  go_process response to salt stress|GO:0009651|16365038|IDA  go_process response to abscisic acid stimulus|GO:0009737|12047634|IMP  go_process response to abscisic acid stimulus|GO:0009737|12514244|IMP  go_process response to abscisic acid stimulus|GO:0009737|15064385|IMP  go_process response to abscisic acid stimulus|GO:0009737|15292193|IDA  go_process response to abscisic acid stimulus|GO:0009737|16365038|IDA  go_process abscisic acid mediated signaling|GO:0009738|12514244|TAS  go_process stomatal movement|GO:0010118|16959575|IMP  go_process regulation of stomatal movement|GO:0010119|12047634|IMP  go_process regulation of stomatal movement|GO:0010119|12514244|IMP  go_process regulation of stomatal movement|GO:0010119|15064385|IMP  go_process defense response to bacterium|GO:0042742|16959575|IMP  go_function protein kinase activity|GO:0004672|12468729|IDA  go_function protein kinase activity|GO:0004672|12514244|TAS  go_function calcium-dependent protein serine/threonine kinase activity|GO:0009931|12468729|ISS  go_function kinase activity|GO:0016301|15292193|IDA  go_function kinase activity|GO:0016301||ISS  product OST1 (OPEN STOMATA 1); calcium-dependent protein serine/threonine kinase/ kinase/ protein kinase  note OPEN STOMATA 1 (OST1); FUNCTIONS IN: calcium-dependent protein serine/threonine kinase activity, protein kinase activity, kinase activity; INVOLVED IN: in 10 processes; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Plant protein serine/threonine kinase-like (InterPro:IPR015740), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: SNRK2.3 (SUCROSE NONFERMENTING 1(SNF1)-RELATED PROTEIN KINASE 2.3); kinase/ protein kinase (TAIR:AT5G66880.1); Has 79129 Blast hits to 77879 proteins in 1865 species: Archae - 47; Bacteria - 7057; Metazoa - 33617; Fungi - 7982; Plants - 14145; Viruses - 431; Other Eukaryotes - 15850 (source: NCBI BLink).  protein_id AT4G33950.2p  transcript_id AT4G33950.2  protein_id AT4G33950.2p  transcript_id AT4G33950.2  
At4g33960	chr4:016277392	0.0	W/16277392-16277595	AT4G33960.1  CDS  gene_syn F17I5.150, F17I5_150  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G15830.1); Has 22 Blast hits to 22 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G33960.1p  transcript_id AT4G33960.1  protein_id AT4G33960.1p  transcript_id AT4G33960.1  
At4g33970	chr4:016279795	0.0	C/16279795-16281894	AT4G33970.1  CDS  gene_syn F17I5.160, F17I5_160  go_component endomembrane system|GO:0012505||IEA  go_function structural constituent of cell wall|GO:0005199|12644681|ISS  go_function protein binding|GO:0005515|12644681|ISS  go_function protein binding|GO:0005515||ISS  product protein binding / structural constituent of cell wall  note protein binding / structural constituent of cell wall; FUNCTIONS IN: structural constituent of cell wall, protein binding; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / extensin family protein (TAIR:AT2G15880.1); Has 278485 Blast hits to 84494 proteins in 2324 species: Archae - 751; Bacteria - 50155; Metazoa - 100840; Fungi - 32141; Plants - 53576; Viruses - 6923; Other Eukaryotes - 34099 (source: NCBI BLink).  protein_id AT4G33970.1p  transcript_id AT4G33970.1  protein_id AT4G33970.1p  transcript_id AT4G33970.1  
At4g33980	chr4:016284791	0.0	C/16284791-16284946,16283930-16284088,16283654-16283846,16283166-16283278,16283047-16283082	AT4G33980.1  CDS  gene_syn F17I5.170, F17I5_170  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42900.3); Has 38 Blast hits to 34 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 6; Plants - 29; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G33980.1p  transcript_id AT4G33980.1  protein_id AT4G33980.1p  transcript_id AT4G33980.1  
At4g33985	chr4:016288485	0.0	C/16288485-16288857,16288301-16288392	AT4G33985.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G15590.2); Has 98 Blast hits to 98 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G33985.1p  transcript_id AT4G33985.1  protein_id AT4G33985.1p  transcript_id AT4G33985.1  
At4g33990	chr4:016290141	0.0	C/16290141-16292612	AT4G33990.1  CDS  gene_syn EMB2758, F17I5.180, F17I5_180, embryo defective 2758  gene EMB2758  go_component mitochondrion|GO:0005739||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product EMB2758 (embryo defective 2758)  note embryo defective 2758 (EMB2758); INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: CRR22 (CHLORORESPIRATORY REDUCTION22); endonuclease (TAIR:AT1G11290.1); Has 15708 Blast hits to 5170 proteins in 185 species: Archae - 0; Bacteria - 2; Metazoa - 111; Fungi - 50; Plants - 15223; Viruses - 0; Other Eukaryotes - 322 (source: NCBI BLink).  protein_id AT4G33990.1p  transcript_id AT4G33990.1  protein_id AT4G33990.1p  transcript_id AT4G33990.1  
At4g34000	chr4:016296008	0.0	W/16296008-16296895,16297048-16297341,16297427-16297498,16297590-16297619,16297891-16297971	AT4G34000.1  CDS  gene_syn ABF3, ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 3, DC3 PROMOTER-BINDING FACTOR 5, DPBF5, F17I5.200  gene ABF3  function Encodes an ABA-responsive element-binding protein with similarity to transcription factors that is expressed in response to stress and abscisic acid.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|11019812|TAS  go_process response to stress|GO:0006950|10636868|TAS  go_process response to stress|GO:0006950|11884679|IMP  go_process response to water deprivation|GO:0009414|16463099|IEP  go_process response to salt stress|GO:0009651|16463099|IEP  go_process response to abscisic acid stimulus|GO:0009737|16258012|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463099|IEP  go_process abscisic acid mediated signaling|GO:0009738|11884679|IMP  go_function DNA binding|GO:0003677|10636868|IPI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|10636868|ISS  go_function transcription factor activity|GO:0003700|10760247|TAS  go_function transcription factor activity|GO:0003700|11019812|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function protein binding|GO:0005515|16299177|IPI  go_function transcription activator activity|GO:0016563|10636868|IDA  go_function transcription activator activity|GO:0016563|10636868|ISS  go_function transcription activator activity|GO:0016563|10636868|TAS  product ABF3 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 3); DNA binding / protein binding / transcription activator/ transcription factor  note ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 3 (ABF3); FUNCTIONS IN: protein binding, transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: ABF4 (ABRE BINDING FACTOR 4); DNA binding / protein binding / transcription activator/ transcription factor (TAIR:AT3G19290.1); Has 1409 Blast hits to 1318 proteins in 126 species: Archae - 0; Bacteria - 2; Metazoa - 441; Fungi - 22; Plants - 852; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).  protein_id AT4G34000.1p  transcript_id AT4G34000.1  protein_id AT4G34000.1p  transcript_id AT4G34000.1  
At4g34000	chr4:016296008	0.0	W/16296008-16296895,16297048-16297341,16297427-16297498,16297590-16297619,16297891-16297971	AT4G34000.2  CDS  gene_syn ABF3, ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 3, DC3 PROMOTER-BINDING FACTOR 5, DPBF5, F17I5.200  gene ABF3  function Encodes an ABA-responsive element-binding protein with similarity to transcription factors that is expressed in response to stress and abscisic acid.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|11019812|TAS  go_process response to stress|GO:0006950|10636868|TAS  go_process response to stress|GO:0006950|11884679|IMP  go_process response to water deprivation|GO:0009414|16463099|IEP  go_process response to salt stress|GO:0009651|16463099|IEP  go_process response to abscisic acid stimulus|GO:0009737|16258012|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463099|IEP  go_process abscisic acid mediated signaling|GO:0009738|11884679|IMP  go_function DNA binding|GO:0003677|10636868|IPI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|10636868|ISS  go_function transcription factor activity|GO:0003700|10760247|TAS  go_function transcription factor activity|GO:0003700|11019812|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function protein binding|GO:0005515|16299177|IPI  go_function transcription activator activity|GO:0016563|10636868|IDA  go_function transcription activator activity|GO:0016563|10636868|ISS  go_function transcription activator activity|GO:0016563|10636868|TAS  product ABF3 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 3); DNA binding / protein binding / transcription activator/ transcription factor  note ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 3 (ABF3); FUNCTIONS IN: protein binding, transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: ABF4 (ABRE BINDING FACTOR 4); DNA binding / protein binding / transcription activator/ transcription factor (TAIR:AT3G19290.1); Has 1409 Blast hits to 1318 proteins in 126 species: Archae - 0; Bacteria - 2; Metazoa - 441; Fungi - 22; Plants - 852; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).  protein_id AT4G34000.2p  transcript_id AT4G34000.2  protein_id AT4G34000.2p  transcript_id AT4G34000.2  
At4g34000	chr4:016296008	0.0	W/16296008-16296895,16297048-16297341,16297427-16297594	AT4G34000.3  CDS  gene_syn ABF3, ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 3, DC3 PROMOTER-BINDING FACTOR 5, DPBF5, F17I5.200  gene ABF3  function Encodes an ABA-responsive element-binding protein with similarity to transcription factors that is expressed in response to stress and abscisic acid.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|11019812|TAS  go_process response to stress|GO:0006950|10636868|TAS  go_process response to stress|GO:0006950|11884679|IMP  go_process response to water deprivation|GO:0009414|16463099|IEP  go_process response to salt stress|GO:0009651|16463099|IEP  go_process response to abscisic acid stimulus|GO:0009737|16258012|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463099|IEP  go_process abscisic acid mediated signaling|GO:0009738|11884679|IMP  go_function DNA binding|GO:0003677|10636868|IPI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|10636868|ISS  go_function transcription factor activity|GO:0003700|10760247|TAS  go_function transcription factor activity|GO:0003700|11019812|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function protein binding|GO:0005515|16299177|IPI  go_function transcription activator activity|GO:0016563|10636868|IDA  go_function transcription activator activity|GO:0016563|10636868|ISS  go_function transcription activator activity|GO:0016563|10636868|TAS  product ABF3 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 3); DNA binding / protein binding / transcription activator/ transcription factor  note ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 3 (ABF3); FUNCTIONS IN: protein binding, transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: ABF4 (ABRE BINDING FACTOR 4); DNA binding / protein binding / transcription activator/ transcription factor (TAIR:AT3G19290.1); Has 1122 Blast hits to 1029 proteins in 120 species: Archae - 0; Bacteria - 2; Metazoa - 213; Fungi - 18; Plants - 815; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT4G34000.3p  transcript_id AT4G34000.3  protein_id AT4G34000.3p  transcript_id AT4G34000.3  
At4g34020	chr4:016300643	0.0	C/16300643-16300897,16300350-16300445,16300088-16300237,16299819-16299998,16299638-16299715,16299209-16299409,16298848-16298985,16298553-16298768	AT4G34020.2  CDS  gene_syn F28A23.220  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  product DJ-1 family protein  note DJ-1 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DJ-1 (InterPro:IPR006287), ThiJ/PfpI (InterPro:IPR002818); BEST Arabidopsis thaliana protein match is: 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative (TAIR:AT3G14990.3); Has 3505 Blast hits to 2238 proteins in 802 species: Archae - 82; Bacteria - 2581; Metazoa - 429; Fungi - 26; Plants - 143; Viruses - 0; Other Eukaryotes - 244 (source: NCBI BLink).  protein_id AT4G34020.2p  transcript_id AT4G34020.2  protein_id AT4G34020.2p  transcript_id AT4G34020.2  
At4g34020	chr4:016300643	0.0	C/16300643-16300897,16300350-16300550,16300088-16300237,16299819-16299998,16299638-16299715,16299209-16299409,16298848-16298985,16298553-16298768	AT4G34020.1  CDS  gene_syn F28A23.220  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  product DJ-1 family protein  note DJ-1 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DJ-1 (InterPro:IPR006287), ThiJ/PfpI (InterPro:IPR002818); BEST Arabidopsis thaliana protein match is: DJ-1 family protein (TAIR:AT1G53280.1); Has 3660 Blast hits to 2251 proteins in 807 species: Archae - 98; Bacteria - 2708; Metazoa - 440; Fungi - 26; Plants - 135; Viruses - 0; Other Eukaryotes - 253 (source: NCBI BLink).  protein_id AT4G34020.1p  transcript_id AT4G34020.1  protein_id AT4G34020.1p  transcript_id AT4G34020.1  
At4g34030	chr4:016301298	0.0	W/16301298-16301540,16301622-16301741,16301906-16302340,16302439-16302529,16302618-16302859,16302938-16303102,16303189-16303263,16303341-16303472,16303607-16303663,16303746-16303949	AT4G34030.1  CDS  gene_syn 3-METHYLCROTONYL-COA CARBOXYLASE, F28A23.210, F28A23_210, MCCB  gene MCCB  function MCC-B is involved in leucine degradation in mitochondria. The active protein is a dimer of MCC-A and MCC-B. MCC-A is biotinylated whereas MCC-B is not.  go_component mitochondrion|GO:0005739|18385124|IDA  go_component mitochondrion|GO:0005739|12068107|TAS  go_component mitochondrion|GO:0005739|14764908|IDA  go_component mitochondrial matrix|GO:0005759||ISS  go_process leucine catabolic process|GO:0006552|12068107|IDA  go_function biotin carboxylase activity|GO:0004075||ISS  go_function methylcrotonoyl-CoA carboxylase activity|GO:0004485|11401427|IDA  product MCCB (3-METHYLCROTONYL-COA CARBOXYLASE); biotin carboxylase/ methylcrotonoyl-CoA carboxylase  note 3-METHYLCROTONYL-COA CARBOXYLASE (MCCB); FUNCTIONS IN: biotin carboxylase activity, methylcrotonoyl-CoA carboxylase activity; INVOLVED IN: leucine catabolic process; LOCATED IN: mitochondrion, mitochondrial matrix; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acetyl-coenzyme A carboxyltransferase, N-terminal (InterPro:IPR011762), Carboxyl transferase (InterPro:IPR000022), Acetyl-coenzyme A carboxyltransferase, C-terminal (InterPro:IPR011763); Has 8293 Blast hits to 8238 proteins in 1132 species: Archae - 80; Bacteria - 3691; Metazoa - 317; Fungi - 145; Plants - 158; Viruses - 0; Other Eukaryotes - 3902 (source: NCBI BLink).  protein_id AT4G34030.1p  transcript_id AT4G34030.1  protein_id AT4G34030.1p  transcript_id AT4G34030.1  
At4g34035	chr4:016304124	0.0	W/16304124-16304196	AT4G34035.1  tRNA  gene_syn 67199.TRNA-ARG-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: TCT)  transcript_id AT4G34035.1  
At4g34040	chr4:016305929	0.0	C/16305929-16307503,16305747-16305797,16305304-16305402,16305084-16305227,16304638-16304769	AT4G34040.1  CDS  gene_syn F28A23.200, F28A23_200  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G15530.3); Has 6527 Blast hits to 5419 proteins in 235 species: Archae - 0; Bacteria - 60; Metazoa - 2220; Fungi - 418; Plants - 2112; Viruses - 34; Other Eukaryotes - 1683 (source: NCBI BLink).  protein_id AT4G34040.1p  transcript_id AT4G34040.1  protein_id AT4G34040.1p  transcript_id AT4G34040.1  
At4g34050	chr4:016310844	0.0	W/16310844-16310934,16311436-16311497,16311680-16311973	AT4G34050.2  CDS  gene_syn F28A23.190, F28A23_190  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytosol|GO:0005829|9484457|TAS  go_process coumarin biosynthetic process|GO:0009805|18547395|IMP  go_function caffeoyl-CoA O-methyltransferase activity|GO:0042409|18547395|IDA  product caffeoyl-CoA 3-O-methyltransferase, putative  note caffeoyl-CoA 3-O-methyltransferase, putative; FUNCTIONS IN: caffeoyl-CoA O-methyltransferase activity; INVOLVED IN: coumarin biosynthetic process, response to cadmium ion; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: O-methyltransferase, family 3 (InterPro:IPR002935); BEST Arabidopsis thaliana protein match is: caffeoyl-CoA 3-O-methyltransferase, putative (TAIR:AT4G26220.1); Has 2353 Blast hits to 2341 proteins in 555 species: Archae - 7; Bacteria - 946; Metazoa - 88; Fungi - 25; Plants - 356; Viruses - 0; Other Eukaryotes - 931 (source: NCBI BLink).  protein_id AT4G34050.2p  transcript_id AT4G34050.2  protein_id AT4G34050.2p  transcript_id AT4G34050.2  
At4g34050	chr4:016310844	0.0	W/16310844-16310972,16311056-16311280,16311366-16311497,16311680-16311973	AT4G34050.1  CDS  gene_syn F28A23.190, F28A23_190  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytosol|GO:0005829|9484457|TAS  go_process coumarin biosynthetic process|GO:0009805|18547395|IMP  go_function caffeoyl-CoA O-methyltransferase activity|GO:0042409|18547395|IDA  product caffeoyl-CoA 3-O-methyltransferase, putative  note caffeoyl-CoA 3-O-methyltransferase, putative; FUNCTIONS IN: caffeoyl-CoA O-methyltransferase activity; INVOLVED IN: coumarin biosynthetic process, response to cadmium ion; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: O-methyltransferase, family 3 (InterPro:IPR002935); BEST Arabidopsis thaliana protein match is: caffeoyl-CoA 3-O-methyltransferase, putative (TAIR:AT4G26220.1); Has 3455 Blast hits to 3452 proteins in 740 species: Archae - 19; Bacteria - 1446; Metazoa - 216; Fungi - 70; Plants - 444; Viruses - 0; Other Eukaryotes - 1260 (source: NCBI BLink).  protein_id AT4G34050.1p  transcript_id AT4G34050.1  protein_id AT4G34050.1p  transcript_id AT4G34050.1  
At4g34060	chr4:016314004	0.0	W/16314004-16314100,16314377-16314466,16314619-16315182,16315273-16315410,16315532-16315852,16316021-16316111,16316195-16316555,16316648-16316727,16316808-16316892,16316972-16317063,16317151-16317219,16317315-16317351,16317429-16317511,16317744-16318199,16318289-16318325,16318419-16318476,16318548-16318684,16318754-16318819,16318900-16319053,16319136-16319254	AT4G34060.1  CDS  gene_syn DEMETER-LIKE PROTEIN 3, DML3, F28A23.180, F28A23_180  gene DML3  function Encodes a protein with 5-meC and thymine-DNA glycosylase activity with a preference for CpG and CpHpG sequences. Involved in maintaining methylation marks.  go_process maintenance of DNA methylation|GO:0010216|18493721|IMP  go_function DNA N-glycosylase activity|GO:0019104|18493721|IDA  product DML3 (DEMETER-LIKE PROTEIN 3); DNA N-glycosylase  note DEMETER-LIKE PROTEIN 3 (DML3); FUNCTIONS IN: DNA N-glycosylase activity; INVOLVED IN: maintenance of DNA methylation; EXPRESSED IN: cotyledon, fruit, hypocotyl, stamen, leaf; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Endonuclease III-like, iron-sulphur cluster loop (InterPro:IPR003651), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: DML1 (DEMETER-LIKE 1); DNA N-glycosylase/ DNA-(apurinic or apyrimidinic site) lyase/ protein binding (TAIR:AT2G36490.1); Has 2468 Blast hits to 2376 proteins in 639 species: Archae - 117; Bacteria - 1075; Metazoa - 144; Fungi - 35; Plants - 154; Viruses - 0; Other Eukaryotes - 943 (source: NCBI BLink).  protein_id AT4G34060.1p  transcript_id AT4G34060.1  protein_id AT4G34060.1p  transcript_id AT4G34060.1  
At4g34060	chr4:016314004	0.0	W/16314004-16314100,16314377-16314466,16314619-16315182,16315273-16315410,16315532-16315852,16316021-16316111,16316195-16316555,16316648-16316727,16316808-16316892,16316972-16317063,16317151-16317219,16317315-16317351,16317429-16317511,16317744-16318199,16318289-16318325,16318419-16318476,16318548-16318684,16318754-16318819,16318947-16318958	AT4G34060.2  CDS  gene_syn DEMETER-LIKE PROTEIN 3, DML3, F28A23.180, F28A23_180  gene DML3  function Encodes a protein with 5-meC and thymine-DNA glycosylase activity with a preference for CpG and CpHpG sequences. Involved in maintaining methylation marks.  go_process maintenance of DNA methylation|GO:0010216|18493721|IMP  go_function DNA N-glycosylase activity|GO:0019104|18493721|IDA  product DML3 (DEMETER-LIKE PROTEIN 3); DNA N-glycosylase  note DEMETER-LIKE PROTEIN 3 (DML3); FUNCTIONS IN: DNA N-glycosylase activity; INVOLVED IN: maintenance of DNA methylation; EXPRESSED IN: cotyledon, fruit, hypocotyl, stamen, leaf; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Endonuclease III-like, iron-sulphur cluster loop (InterPro:IPR003651), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: DME (DEMETER); DNA N-glycosylase/ DNA-(apurinic or apyrimidinic site) lyase (TAIR:AT5G04560.2); Has 2400 Blast hits to 2320 proteins in 632 species: Archae - 117; Bacteria - 1077; Metazoa - 108; Fungi - 34; Plants - 151; Viruses - 0; Other Eukaryotes - 913 (source: NCBI BLink).  protein_id AT4G34060.2p  transcript_id AT4G34060.2  protein_id AT4G34060.2p  transcript_id AT4G34060.2  
At4g34065	chr4:016321340	0.0	W/16321340-16321489	AT4G34065.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G06265; hyaluronan mediated motility receptor-related  
At4g34071	chr4:016325750	0.0	W/16325750-16326840	AT4G34071.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT4G34070  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G34071.1  
At4g34070	chr4:016325989	0.0	C/16325989-16326124,16325831-16325897,16324943-16325080,16324752-16324854,16324544-16324648,16324300-16324385,16323886-16324124,16323591-16323780,16323341-16323368	AT4G34070.1  CDS  gene_syn F28A23.170, F28A23_170  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product calcium ion binding  note calcium ion binding; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: nucleolar protein-related (TAIR:AT5G06260.1); Has 130 Blast hits to 129 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 63; Fungi - 2; Plants - 25; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT4G34070.1p  transcript_id AT4G34070.1  protein_id AT4G34070.1p  transcript_id AT4G34070.1  
At4g34080	chr4:016326985	0.0	W/16326985-16327797	AT4G34080.1  CDS  gene_syn F28A23.160, F28A23_160  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF641, plant (InterPro:IPR006943); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45260.1); Has 130 Blast hits to 130 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 5; Plants - 115; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G34080.1p  transcript_id AT4G34080.1  protein_id AT4G34080.1p  transcript_id AT4G34080.1  
At4g34090	chr4:016330026	0.0	C/16330026-16330110,16329673-16329756,16329454-16329528,16329321-16329363,16329166-16329223,16328909-16329064,16328761-16328823,16328569-16328663,16328398-16328479,16328051-16328302	AT4G34090.1  CDS  gene_syn F28A23.150, F28A23_150  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23370.1); Has 40 Blast hits to 38 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G34090.1p  transcript_id AT4G34090.1  protein_id AT4G34090.1p  transcript_id AT4G34090.1  
At4g34090	chr4:016330026	0.0	C/16330026-16330110,16329673-16329756,16329454-16329528,16329321-16329366,16329166-16329223,16328909-16329064,16328761-16328823,16328569-16328663,16328398-16328479,16328051-16328302	AT4G34090.2  CDS  gene_syn F28A23.150, F28A23_150  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23370.1); Has 40 Blast hits to 38 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G34090.2p  transcript_id AT4G34090.2  protein_id AT4G34090.2p  transcript_id AT4G34090.2  
At4g34100	chr4:016330590	0.0	W/16330590-16330925,16331180-16331863,16331970-16332731,16332824-16333035,16333115-16333483,16333643-16333803,16333887-16334050,16334144-16334290,16334373-16334864	AT4G34100.1  CDS  gene_syn F28A23.140, F28A23_140  go_component chloroplast|GO:0009507||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT4G32670.1); Has 1572 Blast hits to 1390 proteins in 165 species: Archae - 0; Bacteria - 0; Metazoa - 796; Fungi - 185; Plants - 291; Viruses - 39; Other Eukaryotes - 261 (source: NCBI BLink).  protein_id AT4G34100.1p  transcript_id AT4G34100.1  protein_id AT4G34100.1p  transcript_id AT4G34100.1  
At4g34100	chr4:016330590	0.0	W/16330590-16330925,16331180-16331863,16331970-16332731,16332824-16333035,16333115-16333483,16333646-16333803,16333887-16334050,16334144-16334290,16334373-16334864	AT4G34100.2  CDS  gene_syn F28A23.140, F28A23_140  go_component chloroplast|GO:0009507||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT4G32670.1); Has 1576 Blast hits to 1395 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 795; Fungi - 185; Plants - 294; Viruses - 39; Other Eukaryotes - 263 (source: NCBI BLink).  protein_id AT4G34100.2p  transcript_id AT4G34100.2  protein_id AT4G34100.2p  transcript_id AT4G34100.2  
At4g34103	chr4:016335338	0.0	W/16335338-16335669	AT4G34103.1  pseudogenic_transcript  pseudo  function pseudogene of protein binding / zinc ion binding protein  
At4g34110	chr4:016336732	0.0	W/16336732-16336999,16337233-16337351,16337539-16338195,16338285-16338362,16338438-16338527,16338795-16338932,16339167-16339337,16339440-16339589,16339674-16339892	AT4G34110.1  CDS  gene_syn F28A23.130, F28A23_130, PAB2, PABP2, POLY(A) BINDING 2, POLY(A) BINDING PROTEIN 2, POLY(A)-BINDING PROTEIN 2  gene PAB2  function Putative poly-A binding protein. Member of a gene family .Expressed in stele and root meristem and post-fertilization ovules.Member of the class II family of PABP proteins.  go_process response to salt stress|GO:0009651|17916636|IEP  go_process translational initiation|GO:0006413|8029336|ISS  go_function RNA binding|GO:0003723||ISS  go_function translation initiation factor activity|GO:0003743|10849338|ISS  go_function translation initiation factor activity|GO:0003743||ISS  product PAB2 (POLY(A) BINDING 2); RNA binding / translation initiation factor  note POLY(A) BINDING 2 (PAB2); FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: response to salt stress, translational initiation; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Polyadenylate-binding protein/Hyperplastic disc protein (InterPro:IPR002004), RNA recognition motif, RNP-1 (InterPro:IPR000504), Polyadenylate binding protein, human types 1, 2, 3, 4 (InterPro:IPR006515), Paraneoplastic encephalomyelitis antigen (InterPro:IPR002343), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor (TAIR:AT1G49760.1); Has 31535 Blast hits to 18744 proteins in 671 species: Archae - 14; Bacteria - 1509; Metazoa - 18231; Fungi - 3937; Plants - 4202; Viruses - 0; Other Eukaryotes - 3642 (source: NCBI BLink).  protein_id AT4G34110.1p  transcript_id AT4G34110.1  protein_id AT4G34110.1p  transcript_id AT4G34110.1  
At4g34120	chr4:016341194	0.0	W/16341194-16341406,16341507-16341594,16341683-16341747,16341933-16341981,16342245-16342297,16342422-16342537,16342669-16342726,16342819-16342893	AT4G34120.1  CDS  gene_syn CDCP1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, F28A23.120, F28A23_120, LEJ1, LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1  gene LEJ1  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product LEJ1 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1)  note LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1 (LEJ1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2) (TAIR:AT4G36910.1); Has 4785 Blast hits to 4390 proteins in 996 species: Archae - 682; Bacteria - 3142; Metazoa - 98; Fungi - 77; Plants - 110; Viruses - 0; Other Eukaryotes - 676 (source: NCBI BLink).  protein_id AT4G34120.1p  transcript_id AT4G34120.1  protein_id AT4G34120.1p  transcript_id AT4G34120.1  
At4g34131	chr4:016343268	0.0	C/16343268-16344713	AT4G34131.1  CDS  gene_syn F28A23.2, UDP-glucosyl transferase 73B3, UGT73B3  gene UGT73B3  go_component endomembrane system|GO:0012505||IEA  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_process response to other organism|GO:0051707|16306146|IEP  go_process response to other organism|GO:0051707|16306146|IMP  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function abscisic acid glucosyltransferase activity|GO:0010294||IDA  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  go_function quercetin 3-O-glucosyltransferase activity|GO:0080043|15352060|IDA  product UGT73B3 (UDP-glucosyl transferase 73B3); UDP-glycosyltransferase/ abscisic acid glucosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring hexosyl groups  note UDP-glucosyl transferase 73B3 (UGT73B3); FUNCTIONS IN: quercetin 3-O-glucosyltransferase activity, transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity; INVOLVED IN: response to cyclopentenone, response to other organism; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT73B2 (UDP-GLUCOSYLTRANSFERASE 73B2); UDP-glucosyltransferase/ UDP-glycosyltransferase/ flavonol 3-O-glucosyltransferase/ quercetin 7-O-glucosyltransferase (TAIR:AT4G34135.1); Has 4171 Blast hits to 4135 proteins in 325 species: Archae - 0; Bacteria - 156; Metazoa - 1200; Fungi - 16; Plants - 2695; Viruses - 75; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT4G34131.1p  transcript_id AT4G34131.1  protein_id AT4G34131.1p  transcript_id AT4G34131.1  
At4g34135	chr4:016346009	0.0	C/16346009-16347016	AT4G34135.2  CDS  gene_syn UDP-GLUCOSYLTRANSFERASE 73B2, UGT73B2  gene UGT73B2  function The At4g34135 gene encodes a flavonol 7-O-glucosyltransferase (EC 2.4.1.237) that glucosylates also with a 20 fold lower activity flavonols (kaempferol and quercetin) at the 3-O-position.  go_component endomembrane system|GO:0012505||IEA  go_process flavonol biosynthetic process|GO:0051555|14697269|IDA  go_process response to other organism|GO:0051707|16306146|IEP  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function UDP-glucosyltransferase activity|GO:0035251|14697269|IDA  go_function UDP-glucosyltransferase activity|GO:0035251|18702669|IDA  go_function flavonol 3-O-glucosyltransferase activity|GO:0047893|14697269|IDA  go_function quercetin 7-O-glucosyltransferase activity|GO:0080044|15352060|IDA  product UGT73B2 (UDP-GLUCOSYLTRANSFERASE 73B2); UDP-glucosyltransferase/ UDP-glycosyltransferase/ flavonol 3-O-glucosyltransferase/ quercetin 7-O-glucosyltransferase  note UDP-GLUCOSYLTRANSFERASE 73B2 (UGT73B2); FUNCTIONS IN: flavonol 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity; INVOLVED IN: flavonol biosynthetic process, response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT73B3 (UDP-glucosyl transferase 73B3); UDP-glycosyltransferase/ abscisic acid glucosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring hexosyl groups (TAIR:AT4G34131.1); Has 2590 Blast hits to 2576 proteins in 145 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 2588; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G34135.2p  transcript_id AT4G34135.2  protein_id AT4G34135.2p  transcript_id AT4G34135.2  
At4g34135	chr4:016346029	0.0	C/16346029-16347016,16345476-16345939	AT4G34135.1  CDS  gene_syn UDP-GLUCOSYLTRANSFERASE 73B2, UGT73B2  gene UGT73B2  function The At4g34135 gene encodes a flavonol 7-O-glucosyltransferase (EC 2.4.1.237) that glucosylates also with a 20 fold lower activity flavonols (kaempferol and quercetin) at the 3-O-position.  go_component endomembrane system|GO:0012505||IEA  go_process flavonol biosynthetic process|GO:0051555|14697269|IDA  go_process response to other organism|GO:0051707|16306146|IEP  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function UDP-glucosyltransferase activity|GO:0035251|14697269|IDA  go_function UDP-glucosyltransferase activity|GO:0035251|18702669|IDA  go_function flavonol 3-O-glucosyltransferase activity|GO:0047893|14697269|IDA  go_function quercetin 7-O-glucosyltransferase activity|GO:0080044|15352060|IDA  product UGT73B2 (UDP-GLUCOSYLTRANSFERASE 73B2); UDP-glucosyltransferase/ UDP-glycosyltransferase/ flavonol 3-O-glucosyltransferase/ quercetin 7-O-glucosyltransferase  note UDP-GLUCOSYLTRANSFERASE 73B2 (UGT73B2); FUNCTIONS IN: flavonol 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity; INVOLVED IN: flavonol biosynthetic process, response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT73B3 (UDP-glucosyl transferase 73B3); UDP-glycosyltransferase/ abscisic acid glucosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring hexosyl groups (TAIR:AT4G34131.1); Has 4155 Blast hits to 4118 proteins in 314 species: Archae - 0; Bacteria - 144; Metazoa - 1220; Fungi - 14; Plants - 2693; Viruses - 57; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT4G34135.1p  transcript_id AT4G34135.1  protein_id AT4G34135.1p  transcript_id AT4G34135.1  
At4g34138	chr4:016348868	0.0	C/16348868-16349858,16348267-16348742	AT4G34138.1  CDS  gene_syn UDP-glucosyl transferase 73B1, UGT73B1  gene UGT73B1  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function abscisic acid glucosyltransferase activity|GO:0010294||IDA  go_function quercetin 3-O-glucosyltransferase activity|GO:0080043|15352060|IDA  go_function quercetin 7-O-glucosyltransferase activity|GO:0080044|15352060|IDA  product UGT73B1 (UDP-glucosyl transferase 73B1); UDP-glycosyltransferase/ abscisic acid glucosyltransferase/ quercetin 3-O-glucosyltransferase/ quercetin 7-O-glucosyltransferase  note UDP-glucosyl transferase 73B1 (UGT73B1); FUNCTIONS IN: quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT73B2 (UDP-GLUCOSYLTRANSFERASE 73B2); UDP-glucosyltransferase/ UDP-glycosyltransferase/ flavonol 3-O-glucosyltransferase/ quercetin 7-O-glucosyltransferase (TAIR:AT4G34135.1); Has 4118 Blast hits to 4072 proteins in 309 species: Archae - 0; Bacteria - 121; Metazoa - 1183; Fungi - 10; Plants - 2709; Viruses - 70; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT4G34138.1p  transcript_id AT4G34138.1  protein_id AT4G34138.1p  transcript_id AT4G34138.1  
At4g34140	chr4:016350942	0.0	W/16350942-16351030,16351295-16351542,16351631-16351688,16351770-16351888,16352002-16352085,16352342-16352617,16352765-16352973,16353076-16353162,16353267-16353359,16353608-16353832,16353918-16354022	AT4G34140.1  CDS  gene_syn F28A23.100, F28A23_100  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component intracellular|GO:0005622||ISS  go_function nucleic acid binding|GO:0003676||ISS  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: D111/G-patch (InterPro:IPR000467); BEST Arabidopsis thaliana protein match is: nucleic acid binding / nucleotide binding / zinc ion binding (TAIR:AT3G54230.1); Has 432 Blast hits to 428 proteins in 79 species: Archae - 0; Bacteria - 2; Metazoa - 338; Fungi - 40; Plants - 36; Viruses - 3; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT4G34140.1p  transcript_id AT4G34140.1  protein_id AT4G34140.1p  transcript_id AT4G34140.1  
At4g34150	chr4:016355035	0.0	W/16355035-16355080,16355187-16355291,16355399-16355525,16355617-16355688,16356378-16356423,16356509-16356818,16356918-16356955	AT4G34150.1  CDS  gene_syn F28A23.90, F28A23_90  go_process response to cold|GO:0009409|14535880|IEP  product C2 domain-containing protein  note C2 domain-containing protein; INVOLVED IN: response to cold; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT1G63220.1); Has 51670 Blast hits to 22878 proteins in 1065 species: Archae - 56; Bacteria - 5686; Metazoa - 20666; Fungi - 7378; Plants - 9433; Viruses - 1410; Other Eukaryotes - 7041 (source: NCBI BLink).  protein_id AT4G34150.1p  transcript_id AT4G34150.1  protein_id AT4G34150.1p  transcript_id AT4G34150.1  
At4g34160	chr4:016357903	0.0	W/16357903-16358376,16358466-16358667,16358777-16358907,16358981-16359304	AT4G34160.1  CDS  gene_syn CYCD3, CYCD3;1, CYCLIN D3;1, F28A23.80, F28A23_80  gene CYCD3;1  function encodes a cyclin D-type protein involved in the switch from cell proliferation to the final stages of differentiation. The gene is transcriptionally regulated by cytokinin and brassinosteroid. Protein interacts with cyclin-dependent kinase inhibitor ICK1.  go_component nucleus|GO:0005634|15610358|IDA  go_process G1 phase of mitotic cell cycle|GO:0000080||NAS  go_process G1/S transition of mitotic cell cycle|GO:0000082|16517759|IMP  go_process response to cytokinin stimulus|GO:0009735|10712535|IGI  go_process response to cytokinin stimulus|GO:0009735|17726100|IMP  go_process response to brassinosteroid stimulus|GO:0009741|11123807|IGI  go_process response to sucrose stimulus|GO:0009744|10848578|IEP  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_process regulation of cell proliferation|GO:0042127|17726100|IGI  go_process regulation of cell cycle|GO:0051726||ISS  go_function protein binding|GO:0005515|17426018|IPI  go_function cyclin-dependent protein kinase regulator activity|GO:0016538||ISS  product CYCD3;1 (CYCLIN D3;1); cyclin-dependent protein kinase regulator/ protein binding  note CYCLIN D3;1 (CYCD3;1); FUNCTIONS IN: protein binding, cyclin-dependent protein kinase regulator activity; INVOLVED IN: in 8 processes; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCD3;2 (CYCLIN D3;2); cyclin-dependent protein kinase (TAIR:AT5G67260.1); Has 2383 Blast hits to 2381 proteins in 239 species: Archae - 0; Bacteria - 0; Metazoa - 1309; Fungi - 250; Plants - 630; Viruses - 0; Other Eukaryotes - 194 (source: NCBI BLink).  protein_id AT4G34160.1p  transcript_id AT4G34160.1  protein_id AT4G34160.1p  transcript_id AT4G34160.1  
At4g34170	chr4:016368087	0.0	W/16368087-16368284,16368342-16369025	AT4G34170.1  CDS  gene_syn F10M10.1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G23580.1); Has 4477 Blast hits to 2617 proteins in 143 species: Archae - 2; Bacteria - 70; Metazoa - 3510; Fungi - 7; Plants - 722; Viruses - 44; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT4G34170.1p  transcript_id AT4G34170.1  protein_id AT4G34170.1p  transcript_id AT4G34170.1  
At4g34180	chr4:016371029	0.0	C/16371029-16371383,16370905-16370949,16370747-16370819,16370548-16370645,16370378-16370448,16370060-16370185	AT4G34180.1  CDS  gene_syn F10M10.6  go_component cell wall|GO:0005618|14595688|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function molecular_function|GO:0003674||ND  product cyclase family protein  note cyclase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Putative cyclase (InterPro:IPR007325); BEST Arabidopsis thaliana protein match is: cyclase family protein (TAIR:AT1G44542.1); Has 819 Blast hits to 819 proteins in 310 species: Archae - 59; Bacteria - 600; Metazoa - 35; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT4G34180.1p  transcript_id AT4G34180.1  protein_id AT4G34180.1p  transcript_id AT4G34180.1  
At4g34190	chr4:016373466	0.0	C/16373466-16373511,16373254-16373364,16372817-16372995,16372606-16372710	AT4G34190.1  CDS  gene_syn F10M10.5, SEP1, STRESS ENHANCED PROTEIN 1  gene SEP1  function Encodes a stress enhanced protein that localizes to the thylakoid membrane and whose mRNA is upregulated in response to high light intensity. It may be involved in chlorophyll binding.  go_component chloroplast thylakoid membrane|GO:0009535|10725357|IDA  go_process response to high light intensity|GO:0009644|10725357|IEP  go_function chlorophyll binding|GO:0016168|10725357|TAS  product SEP1 (STRESS ENHANCED PROTEIN 1); chlorophyll binding  note STRESS ENHANCED PROTEIN 1 (SEP1); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to high light intensity; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; Has 31 Blast hits to 31 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G34190.1p  transcript_id AT4G34190.1  protein_id AT4G34190.1p  transcript_id AT4G34190.1  
At4g34200	chr4:016376006	0.0	C/16376006-16376561,16375247-16375734,16375061-16375156,16374041-16374712	AT4G34200.1  CDS  gene_syn EDA9, F10M10.7, embryo sac development arrest 9  gene EDA9  go_component mitochondrion|GO:0005739|17137349|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process megagametogenesis|GO:0009561|15634699|IMP  product EDA9 (embryo sac development arrest 9); ATP binding  note embryo sac development arrest 9 (EDA9); FUNCTIONS IN: ATP binding; INVOLVED IN: megagametogenesis; LOCATED IN: mitochondrion, chloroplast, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-3-phosphoglycerate dehydrogenase (InterPro:IPR006236), D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), D-3-phosphogylcerate Dehydrogenase (InterPro:IPR015508), Amino acid-binding ACT (InterPro:IPR002912), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-3-phosphoglycerate dehydrogenase, putative / 3-PGDH, putative (TAIR:AT3G19480.1); Has 20829 Blast hits to 20828 proteins in 1560 species: Archae - 296; Bacteria - 9792; Metazoa - 668; Fungi - 756; Plants - 318; Viruses - 5; Other Eukaryotes - 8994 (source: NCBI BLink).  protein_id AT4G34200.1p  transcript_id AT4G34200.1  protein_id AT4G34200.1p  transcript_id AT4G34200.1  
At4g34210	chr4:016379003	0.0	W/16379003-16379461	AT4G34210.1  CDS  gene_syn ARABIDOPSIS SKP1-LIKE 11, ASK11, F10M10.2  gene ASK11  function one of 20 SKP1 homologs in Arabidopsis. Protein is most similar to ASK12 and RNAi lines show defects in stamen development.  go_component endomembrane system|GO:0012505||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|14749489|IPI  product ASK11 (ARABIDOPSIS SKP1-LIKE 11); protein binding / ubiquitin-protein ligase  note ARABIDOPSIS SKP1-LIKE 11 (ASK11); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: ASK12 (ARABIDOPSIS SKP1-LIKE 12); protein binding / ubiquitin-protein ligase (TAIR:AT4G34470.1); Has 1119 Blast hits to 1116 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 497; Fungi - 117; Plants - 363; Viruses - 11; Other Eukaryotes - 131 (source: NCBI BLink).  protein_id AT4G34210.1p  transcript_id AT4G34210.1  protein_id AT4G34210.1p  transcript_id AT4G34210.1  
At4g34215	chr4:016380602	0.0	C/16380602-16381192,16380203-16380394	AT4G34215.1  CDS  function Encodes a member of the SGNH-hydrolase superfamily of enzymes. The enzymes of the SGNH-hydrolase superfamily facilitate the hydrolysis of ester, thioester and amide bonds in a range of substrates including complex polysaccharides, lysophospholipids, acyl-CoA esters and other compounds.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787|16301800|ISS  product hydrolase  note hydrolase; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF303, acetylesterase putative (InterPro:IPR005181); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53010.1); Has 205 Blast hits to 205 proteins in 59 species: Archae - 0; Bacteria - 129; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT4G34215.1p  transcript_id AT4G34215.1  protein_id AT4G34215.1p  transcript_id AT4G34215.1  
At4g34215	chr4:016380602	0.0	C/16380602-16381192,16380203-16380394	AT4G34215.2  CDS  function Encodes a member of the SGNH-hydrolase superfamily of enzymes. The enzymes of the SGNH-hydrolase superfamily facilitate the hydrolysis of ester, thioester and amide bonds in a range of substrates including complex polysaccharides, lysophospholipids, acyl-CoA esters and other compounds.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787|16301800|ISS  product hydrolase  note hydrolase; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF303, acetylesterase putative (InterPro:IPR005181); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53010.1); Has 205 Blast hits to 205 proteins in 59 species: Archae - 0; Bacteria - 129; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT4G34215.2p  transcript_id AT4G34215.2  protein_id AT4G34215.2p  transcript_id AT4G34215.2  
At4g34220	chr4:016382374	0.0	C/16382374-16384054,16381653-16382245	AT4G34220.1  CDS  gene_syn F10M10.12  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT2G15300.1); Has 87334 Blast hits to 65399 proteins in 2180 species: Archae - 53; Bacteria - 6794; Metazoa - 27259; Fungi - 3972; Plants - 38293; Viruses - 270; Other Eukaryotes - 10693 (source: NCBI BLink).  protein_id AT4G34220.1p  transcript_id AT4G34220.1  protein_id AT4G34220.1p  transcript_id AT4G34220.1  
At4g34230	chr4:016388578	0.0	C/16388578-16388666,16388375-16388488,16388053-16388280,16387189-16387632,16386898-16387096	AT4G34230.2  CDS  gene_syn ATCAD5, CAD-5, CAD5, CINNAMYL ALCOHOL DEHYDROGENASE 5, F10M10.11, cinnamyl alcohol dehydrogenase 5  gene ATCAD5  function Encodes a catalytically active cinnamyl alcohol dehydrogenase which uses p-coumaryl aldehyde as a preferred substrate. It can also use sinapyl, caffeyl, coniferyl and d-hydroxyconiferyl aldehydes as substrates.  go_component cellular_component|GO:0005575||ND  go_process lignin biosynthetic process|GO:0009809|15937231|IGI  go_process lignin biosynthetic process|GO:0009809|1643282|TAS  go_function cinnamyl-alcohol dehydrogenase activity|GO:0045551|14745009|IDA  product ATCAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5); cinnamyl-alcohol dehydrogenase  note cinnamyl alcohol dehydrogenase 5 (CAD5); FUNCTIONS IN: cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: lignin biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: ATCAD4; cinnamyl-alcohol dehydrogenase (TAIR:AT3G19450.1); Has 25742 Blast hits to 25712 proteins in 1860 species: Archae - 368; Bacteria - 14899; Metazoa - 1287; Fungi - 2071; Plants - 1948; Viruses - 3; Other Eukaryotes - 5166 (source: NCBI BLink).  protein_id AT4G34230.2p  transcript_id AT4G34230.2  protein_id AT4G34230.2p  transcript_id AT4G34230.2  
At4g34230	chr4:016388578	0.0	C/16388578-16388666,16388375-16388488,16388053-16388280,16387193-16387632,16386898-16387100	AT4G34230.1  CDS  gene_syn ATCAD5, CAD-5, CAD5, CINNAMYL ALCOHOL DEHYDROGENASE 5, F10M10.11, cinnamyl alcohol dehydrogenase 5  gene ATCAD5  function Encodes a catalytically active cinnamyl alcohol dehydrogenase which uses p-coumaryl aldehyde as a preferred substrate. It can also use sinapyl, caffeyl, coniferyl and d-hydroxyconiferyl aldehydes as substrates.  go_component cellular_component|GO:0005575||ND  go_process lignin biosynthetic process|GO:0009809|15937231|IGI  go_process lignin biosynthetic process|GO:0009809|1643282|TAS  go_function cinnamyl-alcohol dehydrogenase activity|GO:0045551|14745009|IDA  product ATCAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5); cinnamyl-alcohol dehydrogenase  note CINNAMYL ALCOHOL DEHYDROGENASE 5 (ATCAD5); FUNCTIONS IN: cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: lignin biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: ATCAD4; cinnamyl-alcohol dehydrogenase (TAIR:AT3G19450.1); Has 25756 Blast hits to 25729 proteins in 1854 species: Archae - 368; Bacteria - 14938; Metazoa - 1276; Fungi - 2069; Plants - 1943; Viruses - 3; Other Eukaryotes - 5159 (source: NCBI BLink).  protein_id AT4G34230.1p  transcript_id AT4G34230.1  protein_id AT4G34230.1p  transcript_id AT4G34230.1  
At4g34240	chr4:016389801	0.0	W/16389801-16389868,16390122-16390211,16390446-16390689,16390778-16390846,16390932-16391028,16391120-16391326,16391421-16391536,16391617-16391721,16391809-16391981,16392068-16392308,16392391-16392633	AT4G34240.1  CDS  gene_syn ALDEHYDE DEHYDROGENASE 3, ALDEHYDE DEHYDROGENASE 3|1, ALDH3, ALDH3I1, F10M10.10, F10M10_10  gene ALDH3I1  function Aldehyde dehydrogenase induced by ABA and dehydration  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastid|GO:0009536|11849595|ISS  go_process response to water deprivation|GO:0009414|11849595|IEP  go_process response to abscisic acid stimulus|GO:0009737|11849595|IEP  go_function 3-chloroallyl aldehyde dehydrogenase activity|GO:0004028|11849595|ISS  go_function 3-chloroallyl aldehyde dehydrogenase activity|GO:0004028||ISS  go_function aldehyde dehydrogenase (NAD) activity|GO:0004029|11849595|ISS  product ALDH3I1 (ALDEHYDE DEHYDROGENASE 3|1); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD)  note ALDEHYDE DEHYDROGENASE 3|1 (ALDH3I1); FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, aldehyde dehydrogenase (NAD) activity; INVOLVED IN: response to water deprivation, response to abscisic acid stimulus; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase NAD(P)-dependent (InterPro:IPR012394), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) (TAIR:AT1G44170.2); Has 37259 Blast hits to 37210 proteins in 1757 species: Archae - 238; Bacteria - 18229; Metazoa - 2102; Fungi - 1325; Plants - 572; Viruses - 0; Other Eukaryotes - 14793 (source: NCBI BLink).  protein_id AT4G34240.1p  transcript_id AT4G34240.1  protein_id AT4G34240.1p  transcript_id AT4G34240.1  
At4g34240	chr4:016389801	0.0	W/16389801-16389868,16390122-16390211,16390446-16390689,16390778-16390846,16390932-16391028,16391120-16391326,16391421-16391536,16391617-16391721,16391809-16391985	AT4G34240.2  CDS  gene_syn ALDEHYDE DEHYDROGENASE 3, ALDEHYDE DEHYDROGENASE 3|1, ALDH3, ALDH3I1, F10M10.10, F10M10_10  gene ALDH3I1  function Aldehyde dehydrogenase induced by ABA and dehydration  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastid|GO:0009536|11849595|ISS  go_process response to water deprivation|GO:0009414|11849595|IEP  go_process response to abscisic acid stimulus|GO:0009737|11849595|IEP  go_function 3-chloroallyl aldehyde dehydrogenase activity|GO:0004028|11849595|ISS  go_function 3-chloroallyl aldehyde dehydrogenase activity|GO:0004028||ISS  go_function aldehyde dehydrogenase (NAD) activity|GO:0004029|11849595|ISS  product ALDH3I1 (ALDEHYDE DEHYDROGENASE 3|1); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD)  note ALDEHYDE DEHYDROGENASE 3|1 (ALDH3I1); FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, aldehyde dehydrogenase (NAD) activity; INVOLVED IN: response to water deprivation, response to abscisic acid stimulus; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase NAD(P)-dependent (InterPro:IPR012394), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) (TAIR:AT1G44170.2); Has 32226 Blast hits to 32223 proteins in 1716 species: Archae - 236; Bacteria - 17383; Metazoa - 1868; Fungi - 1248; Plants - 536; Viruses - 0; Other Eukaryotes - 10955 (source: NCBI BLink).  protein_id AT4G34240.2p  transcript_id AT4G34240.2  protein_id AT4G34240.2p  transcript_id AT4G34240.2  
At4g34250	chr4:016394749	0.0	W/16394749-16396230	AT4G34250.1  CDS  gene_syn 3-KETOACYL-COA SYNTHASE 16, F10M10.20, F10M10_20, KCS16  gene KCS16  function Encodes KCS16, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_function catalytic activity|GO:0003824||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_process very-long-chain fatty acid metabolic process|GO:0000038|7734965|IMP  go_process response to osmotic stress|GO:0006970|18465198|IEP  go_process response to light stimulus|GO:0009416|18465198|IEP  go_process fatty acid elongation|GO:0030497|7734965|IMP  go_function acyltransferase activity|GO:0008415||ISS  product KCS16 (3-KETOACYL-COA SYNTHASE 16); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups  note 3-KETOACYL-COA SYNTHASE 16 (KCS16); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: fatty acid elongation, very-long-chain fatty acid metabolic process, response to light stimulus, response to osmotic stress; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Chalcone and stilbene synthases, C-terminal (InterPro:IPR012328), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: KCS8 (3-KETOACYL-COA SYNTHASE 8); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups (TAIR:AT2G15090.1); Has 3361 Blast hits to 3354 proteins in 802 species: Archae - 0; Bacteria - 993; Metazoa - 0; Fungi - 12; Plants - 2241; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).  protein_id AT4G34250.1p  transcript_id AT4G34250.1  protein_id AT4G34250.1p  transcript_id AT4G34250.1  
At4g34260	chr4:016398130	0.0	W/16398130-16398400,16398675-16398820,16398916-16399778,16399865-16399997,16400097-16400255,16400343-16400567,16400648-16400885,16400978-16401173,16401291-16401591	AT4G34260.1  CDS  gene_syn F10M10.30, F10M10_30, FUC95A  gene FUC95A  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function 1,2-alpha-L-fucosidase activity|GO:0047513|18495185|IDA  product FUC95A; 1,2-alpha-L-fucosidase  note FUC95A; FUNCTIONS IN: 1,2-alpha-L-fucosidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase-like (InterPro:IPR008928), Uncharacterised conserved protein UCP007663 (InterPro:IPR016518); Has 605 Blast hits to 593 proteins in 134 species: Archae - 0; Bacteria - 464; Metazoa - 0; Fungi - 63; Plants - 24; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT4G34260.1p  transcript_id AT4G34260.1  protein_id AT4G34260.1p  transcript_id AT4G34260.1  
At4g34265	chr4:016402345	0.0	W/16402345-16402490,16402617-16402735,16402958-16402977	AT4G34265.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G15000.3); Has 58 Blast hits to 58 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G34265.1p  transcript_id AT4G34265.1  protein_id AT4G34265.1p  transcript_id AT4G34265.1  
At4g34265	chr4:016402345	0.0	W/16402345-16402490,16402617-16402735,16403455-16403462	AT4G34265.2  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G15000.5); Has 57 Blast hits to 57 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G34265.2p  transcript_id AT4G34265.2  protein_id AT4G34265.2p  transcript_id AT4G34265.2  
At4g34270	chr4:016406014	0.0	C/16406014-16406153,16405404-16405589,16405205-16405295,16404988-16405101,16404851-16404910,16404701-16404742,16404453-16404581,16404138-16404248	AT4G34270.1  CDS  gene_syn F10M10.40, F10M10_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product TIP41-like family protein  note TIP41-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: TIP41-like protein (InterPro:IPR007303); Has 248 Blast hits to 248 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 108; Fungi - 81; Plants - 27; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT4G34270.1p  transcript_id AT4G34270.1  protein_id AT4G34270.1p  transcript_id AT4G34270.1  
At4g34272	chr4:016406426	0.0	C/16406426-16406542	AT4G34272.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G34272.1p  transcript_id AT4G34272.1  protein_id AT4G34272.1p  transcript_id AT4G34272.1  
At4g34280	chr4:016407084	0.0	W/16407084-16407121,16407578-16407644,16407743-16407993,16408086-16408617,16408711-16409328,16409409-16409852,16409968-16410162,16410262-16410321,16410411-16410473,16410561-16410644	AT4G34280.1  CDS  gene_syn F10M10.50, F10M10_50  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: U2A&apos;/phosphoprotein 32 family A, C-terminal (InterPro:IPR003603), WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein / katanin p80 subunit, putative (TAIR:AT1G61210.1); Has 4426 Blast hits to 3510 proteins in 253 species: Archae - 5; Bacteria - 652; Metazoa - 2044; Fungi - 659; Plants - 356; Viruses - 0; Other Eukaryotes - 710 (source: NCBI BLink).  protein_id AT4G34280.1p  transcript_id AT4G34280.1  protein_id AT4G34280.1p  transcript_id AT4G34280.1  
At4g34290	chr4:016410883	0.0	W/16410883-16411200,16412006-16412122	AT4G34290.1  CDS  gene_syn F10M10.60, F10M10_60  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SWIB complex BAF60b domain-containing protein  note SWIB complex BAF60b domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 (InterPro:IPR003121); BEST Arabidopsis thaliana protein match is: SWIB complex BAF60b domain-containing protein (TAIR:AT2G14880.1); Has 806 Blast hits to 766 proteins in 168 species: Archae - 0; Bacteria - 129; Metazoa - 128; Fungi - 124; Plants - 206; Viruses - 9; Other Eukaryotes - 210 (source: NCBI BLink).  protein_id AT4G34290.1p  transcript_id AT4G34290.1  protein_id AT4G34290.1p  transcript_id AT4G34290.1  
At4g34300	chr4:016412773	0.0	W/16412773-16413714	AT4G34300.1  CDS  gene_syn F10M10.70, F10M10_70  function Encodes protein with 14.7% glycine residues, similar to auxin response factor 30 (GI:20145855) {Arabidopsis thaliana}  go_component endomembrane system|GO:0012505||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  product glycine-rich protein  note glycine-rich protein; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G33930.1); Has 45525 Blast hits to 14712 proteins in 1027 species: Archae - 94; Bacteria - 12636; Metazoa - 13807; Fungi - 3776; Plants - 2441; Viruses - 321; Other Eukaryotes - 12450 (source: NCBI BLink).  protein_id AT4G34300.1p  transcript_id AT4G34300.1  protein_id AT4G34300.1p  transcript_id AT4G34300.1  
At4g34310	chr4:016414113	0.0	W/16414113-16414871,16415223-16416371,16416498-16417640,16417795-16417836,16418323-16418399,16418608-16418692,16418810-16418893,16418994-16419095,16419203-16419301,16419396-16419542	AT4G34310.1  CDS  gene_syn F10M10.80, F10M10_80  product unknown protein  note unknown protein; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 500 Blast hits to 500 proteins in 128 species: Archae - 0; Bacteria - 72; Metazoa - 139; Fungi - 245; Plants - 21; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT4G34310.1p  transcript_id AT4G34310.1  protein_id AT4G34310.1p  transcript_id AT4G34310.1  
At4g34310	chr4:016414113	0.0	W/16414113-16414871,16415223-16416371,16416498-16417640,16418608-16418664	AT4G34310.2  CDS  gene_syn F10M10.80, F10M10_80  product unknown protein  note unknown protein; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 81 Blast hits to 81 proteins in 37 species: Archae - 0; Bacteria - 2; Metazoa - 51; Fungi - 9; Plants - 13; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G34310.2p  transcript_id AT4G34310.2  protein_id AT4G34310.2p  transcript_id AT4G34310.2  
At4g34320	chr4:016422436	0.0	W/16422436-16422880,16423145-16423824	AT4G34320.1  CDS  gene_syn F10M10.90, F10M10_90  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: sepal, hypocotyl, flower, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34330.1); Has 147 Blast hits to 147 proteins in 13 species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi - 0; Plants - 140; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G34320.1p  transcript_id AT4G34320.1  protein_id AT4G34320.1p  transcript_id AT4G34320.1  
At4g34330	chr4:016424713	0.0	W/16424713-16425112,16425226-16425890	AT4G34330.1  CDS  gene_syn F10M10.100, F10M10_100  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34320.1); Has 96 Blast hits to 96 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G34330.1p  transcript_id AT4G34330.1  protein_id AT4G34330.1p  transcript_id AT4G34330.1  
At4g34332	chr4:016424716	0.0	C/16424716-16425890	AT4G34332.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT4G34330  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G34332.1  
At4g34340	chr4:016426771	0.0	C/16426771-16427832	AT4G34340.1  CDS  gene_syn F10M10.110, F10M10_110, TAF8, TBP-ASSOCIATED FACTOR 8  gene TAF8  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product TAF8 (TBP-ASSOCIATED FACTOR 8); DNA binding  note TBP-ASSOCIATED FACTOR 8 (TAF8); FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072), Bromodomain transcription factor (InterPro:IPR006565); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT3G02160.1); Has 284 Blast hits to 284 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 183; Fungi - 41; Plants - 50; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT4G34340.1p  transcript_id AT4G34340.1  protein_id AT4G34340.1p  transcript_id AT4G34340.1  
At4g34350	chr4:016430762	0.0	C/16430762-16431038,16430304-16430500,16430026-16430205,16429793-16429924,16429632-16429706,16429457-16429562,16429268-16429362,16428994-16429179,16428834-16428920,16428681-16428746	AT4G34350.1  CDS  gene_syn 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE, CHLOROPLAST BIOGENESIS 6, CLB6, F10M10.120, F10M10_120, HDR, ISPH  gene HDR  function Arabidopsis ISPH is involved in the plastid nonmevalonate pathway of isoprenoid biosynthesis. It was shown to complement the lethal phenotype of E. coli ispH mutant and is therefore most likely encodes a protein with 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity involved in the last step of mevalonate-independent isopentenyl biosynthesis. Mutant has Albino seedling.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast stroma|GO:0009570|15863698|IDA  go_process isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway|GO:0019288|15659625|IEP  go_process isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway|GO:0019288|15863698|IGI  go_process isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway|GO:0019288||ISS  go_process response to antibiotic|GO:0046677||ISS  go_function 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity|GO:0046429|15659625|IMP  go_function 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity|GO:0051745|15863698|IGI  product HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE); 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase/ 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase  note 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE (HDR); FUNCTIONS IN: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity; INVOLVED IN: response to antibiotic, isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: LytB protein (InterPro:IPR003451); Has 4797 Blast hits to 4796 proteins in 1165 species: Archae - 0; Bacteria - 2427; Metazoa - 3; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 2308 (source: NCBI BLink).  protein_id AT4G34350.1p  transcript_id AT4G34350.1  protein_id AT4G34350.1p  transcript_id AT4G34350.1  
At4g34360	chr4:016432011	0.0	W/16432011-16432072,16432151-16432247,16432344-16432482,16432705-16432787,16432938-16433072,16433158-16433262,16433627-16433752	AT4G34360.1  CDS  gene_syn F10M10.130, F10M10_130  go_process metabolic process|GO:0008152||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  go_function catalytic activity|GO:0003824||ISS  product protease-related  note protease-related; FUNCTIONS IN: methyltransferase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: catalytic/ methyltransferase (TAIR:AT3G60910.1); Has 1545 Blast hits to 1545 proteins in 453 species: Archae - 56; Bacteria - 672; Metazoa - 321; Fungi - 61; Plants - 99; Viruses - 0; Other Eukaryotes - 336 (source: NCBI BLink).  protein_id AT4G34360.1p  transcript_id AT4G34360.1  protein_id AT4G34360.1p  transcript_id AT4G34360.1  
At4g34370	chr4:016434547	0.0	W/16434547-16434672,16434999-16435031,16435113-16435395,16435468-16435948,16436077-16436786,16436877-16437037	AT4G34370.1  CDS  gene_syn ARI1, ARIADNE, ATARI1, F10M10.140, F10M10_140  gene ARI1  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product ARI1 (ARIADNE); protein binding / zinc ion binding  note ARIADNE (ARI1); FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger protein-related (TAIR:AT2G16090.1); Has 2246 Blast hits to 2231 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 1159; Fungi - 347; Plants - 351; Viruses - 7; Other Eukaryotes - 382 (source: NCBI BLink).  protein_id AT4G34370.1p  transcript_id AT4G34370.1  protein_id AT4G34370.1p  transcript_id AT4G34370.1  
At4g34380	chr4:016438835	0.0	W/16438835-16440322	AT4G34380.1  CDS  gene_syn F10M10.150, F10M10_150  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: heterotrimeric G-protein complex; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G18950.1); Has 22712 Blast hits to 12420 proteins in 443 species: Archae - 16; Bacteria - 3157; Metazoa - 9533; Fungi - 4921; Plants - 1930; Viruses - 0; Other Eukaryotes - 3155 (source: NCBI BLink).  protein_id AT4G34380.1p  transcript_id AT4G34380.1  protein_id AT4G34380.1p  transcript_id AT4G34380.1  
At4g34390	chr4:016441579	0.0	W/16441579-16442619,16442713-16442850,16442943-16443047,16443130-16443288,16443369-16443516,16443630-16443865,16443974-16444137,16444246-16444840	AT4G34390.1  CDS  gene_syn F10M10.160, F10M10_160, XLG2, extra-large GTP-binding protein 2  gene XLG2  go_function signal transducer activity|GO:0004871||IEA  go_function guanyl nucleotide binding|GO:0019001||IEA  go_component nucleus|GO:0005634|17999646|IDA  go_process G-protein coupled receptor protein signaling pathway|GO:0007186||ISS  go_process response to abscisic acid stimulus|GO:0009737|17999646|IGI  go_process response to sucrose stimulus|GO:0009744|17999646|IGI  go_process response to glucose stimulus|GO:0009749|17999646|IGI  go_process response to fructose stimulus|GO:0009750|17999646|IGI  go_process root morphogenesis|GO:0010015|17999646|IGI  go_process response to mannitol stimulus|GO:0010555|17999646|IGI  go_function signal transducer activity|GO:0004871||ISS  product XLG2 (extra-large GTP-binding protein 2); guanyl nucleotide binding / signal transducer  note extra-large GTP-binding protein 2 (XLG2); FUNCTIONS IN: guanyl nucleotide binding, signal transducer activity; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Guanine nucleotide binding protein (G-protein), alpha subunit (InterPro:IPR001019), G protein alpha subunit, helical insertion (InterPro:IPR011025); BEST Arabidopsis thaliana protein match is: XLG1 (EXTRA-LARGE G-PROTEIN 1); guanyl nucleotide binding / signal transducer (TAIR:AT2G23460.1); Has 2643 Blast hits to 2642 proteins in 328 species: Archae - 0; Bacteria - 2; Metazoa - 1875; Fungi - 392; Plants - 229; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink).  protein_id AT4G34390.1p  transcript_id AT4G34390.1  protein_id AT4G34390.1p  transcript_id AT4G34390.1  
At4g34400	chr4:016445323	0.0	W/16445323-16445409,16446030-16446402,16446482-16446628,16446730-16446948,16447033-16447056,16447149-16447240,16447345-16447596	AT4G34400.1  CDS  gene_syn F10M10.170, F10M10_170  go_component endomembrane system|GO:0012505||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product DNA binding / transcription factor  note DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT3G06160.1); Has 16583 Blast hits to 9749 proteins in 503 species: Archae - 24; Bacteria - 2703; Metazoa - 6126; Fungi - 1857; Plants - 832; Viruses - 202; Other Eukaryotes - 4839 (source: NCBI BLink).  protein_id AT4G34400.1p  transcript_id AT4G34400.1  protein_id AT4G34400.1p  transcript_id AT4G34400.1  
At4g34410	chr4:016451992	0.0	W/16451992-16452798	AT4G34410.1  CDS  gene_syn RRTF1, {REDOX RESPONSIVE TRANSCRIPTION FACTOR 1  gene RRTF1  function encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to chitin|GO:0010200|17722694|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1); DNA binding / transcription factor  note {REDOX RESPONSIVE TRANSCRIPTION FACTOR 1 (RRTF1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to chitin, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT5G50080.1); Has 3950 Blast hits to 3747 proteins in 203 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 3936; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT4G34410.1p  transcript_id AT4G34410.1  protein_id AT4G34410.1p  transcript_id AT4G34410.1  
At4g34412	chr4:016454445	0.0	C/16454445-16454515,16454157-16454223,16453941-16454063,16453457-16453540,16453269-16453355,16453099-16453185	AT4G34412.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Kinase binding protein CGI-121 (InterPro:IPR013926); Has 194 Blast hits to 194 proteins in 96 species: Archae - 0; Bacteria - 4; Metazoa - 78; Fungi - 77; Plants - 19; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT4G34412.1p  transcript_id AT4G34412.1  protein_id AT4G34412.1p  transcript_id AT4G34412.1  
At4g34415	chr4:016454697	0.0	C/16454697-16454769	AT4G34415.1  tRNA  gene_syn 67200.TRNA-ARG-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: CCT)  transcript_id AT4G34415.1  
At4g34420	chr4:016456597	0.0	W/16456597-16456966,16458353-16458459,16458736-16458971,16459065-16459323,16459942-16460277,16460359-16460526	AT4G34420.1  CDS  gene_syn F10M10.190, F10M10_190  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G15730.1); Has 111 Blast hits to 107 proteins in 12 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G34420.1p  transcript_id AT4G34420.1  protein_id AT4G34420.1p  transcript_id AT4G34420.1  
At4g34430	chr4:016461069	0.0	W/16461069-16461522,16461978-16462504,16462590-16463258,16463379-16463542,16463652-16464250,16464350-16464540,16464637-16464993	AT4G34430.4  CDS  gene_syn ATSWI3D, CHB3, F10M10.200, F10M10_200, SWITCH/SUCROSE NONFERMENTING 3D  gene CHB3  function Member of a small family of SWI3-like genes in Arabidopsis. Referred to as CHB4 in Zhou et al. (2002).  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product CHB3; DNA binding / transcription factor/ zinc ion binding  note CHB3; FUNCTIONS IN: transcription factor activity, DNA binding, zinc ion binding; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SWIRM (InterPro:IPR007526), SANT, eukarya (InterPro:IPR017884), Zinc finger, ZZ-type (InterPro:IPR000433); BEST Arabidopsis thaliana protein match is: ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C); DNA binding (TAIR:AT1G21700.1); Has 14274 Blast hits to 9174 proteins in 631 species: Archae - 26; Bacteria - 1000; Metazoa - 6267; Fungi - 1831; Plants - 624; Viruses - 99; Other Eukaryotes - 4427 (source: NCBI BLink).  protein_id AT4G34430.4p  transcript_id AT4G34430.4  protein_id AT4G34430.4p  transcript_id AT4G34430.4  
At4g34430	chr4:016461069	0.0	W/16461069-16461522,16461978-16462504,16462590-16463258,16463379-16463542,16463652-16464250,16464350-16464540,16464640-16464993	AT4G34430.1  CDS  gene_syn ATSWI3D, CHB3, F10M10.200, F10M10_200, SWITCH/SUCROSE NONFERMENTING 3D  gene CHB3  function Member of a small family of SWI3-like genes in Arabidopsis. Referred to as CHB4 in Zhou et al. (2002).  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product CHB3; DNA binding / transcription factor/ zinc ion binding  note CHB3; FUNCTIONS IN: transcription factor activity, DNA binding, zinc ion binding; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), SWIRM (InterPro:IPR007526), SANT, eukarya (InterPro:IPR017884), Zinc finger, ZZ-type (InterPro:IPR000433); BEST Arabidopsis thaliana protein match is: ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C); DNA binding (TAIR:AT1G21700.1); Has 14173 Blast hits to 9147 proteins in 625 species: Archae - 24; Bacteria - 1012; Metazoa - 6268; Fungi - 1841; Plants - 628; Viruses - 100; Other Eukaryotes - 4300 (source: NCBI BLink).  protein_id AT4G34430.1p  transcript_id AT4G34430.1  protein_id AT4G34430.1p  transcript_id AT4G34430.1  
At4g34430	chr4:016461069	0.0	W/16461069-16461522,16461978-16462504,16462590-16463258,16463379-16463542,16463652-16464250,16464350-16464540,16464640-16464993	AT4G34430.2  CDS  gene_syn ATSWI3D, CHB3, F10M10.200, F10M10_200, SWITCH/SUCROSE NONFERMENTING 3D  gene CHB3  function Member of a small family of SWI3-like genes in Arabidopsis. Referred to as CHB4 in Zhou et al. (2002).  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product CHB3; DNA binding / transcription factor/ zinc ion binding  note CHB3; FUNCTIONS IN: transcription factor activity, DNA binding, zinc ion binding; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), SWIRM (InterPro:IPR007526), SANT, eukarya (InterPro:IPR017884), Zinc finger, ZZ-type (InterPro:IPR000433); BEST Arabidopsis thaliana protein match is: ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C); DNA binding (TAIR:AT1G21700.1); Has 14173 Blast hits to 9147 proteins in 625 species: Archae - 24; Bacteria - 1012; Metazoa - 6268; Fungi - 1841; Plants - 628; Viruses - 100; Other Eukaryotes - 4300 (source: NCBI BLink).  protein_id AT4G34430.2p  transcript_id AT4G34430.2  protein_id AT4G34430.2p  transcript_id AT4G34430.2  
At4g34430	chr4:016461069	0.0	W/16461069-16461522,16461978-16462504,16462590-16463258,16463379-16463542,16463658-16464250,16464350-16464540,16464640-16464993	AT4G34430.3  CDS  gene_syn ATSWI3D, CHB3, F10M10.200, F10M10_200, SWITCH/SUCROSE NONFERMENTING 3D  gene CHB3  function Member of a small family of SWI3-like genes in Arabidopsis. Referred to as CHB4 in Zhou et al. (2002).  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product CHB3; DNA binding / transcription factor/ zinc ion binding  note CHB3; FUNCTIONS IN: transcription factor activity, DNA binding, zinc ion binding; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SWIRM (InterPro:IPR007526), SANT, eukarya (InterPro:IPR017884), Zinc finger, ZZ-type (InterPro:IPR000433); BEST Arabidopsis thaliana protein match is: ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C); DNA binding (TAIR:AT1G21700.1); Has 15271 Blast hits to 9847 proteins in 676 species: Archae - 33; Bacteria - 1197; Metazoa - 6682; Fungi - 1970; Plants - 641; Viruses - 137; Other Eukaryotes - 4611 (source: NCBI BLink).  protein_id AT4G34430.3p  transcript_id AT4G34430.3  protein_id AT4G34430.3p  transcript_id AT4G34430.3  
At4g34440	chr4:016466008	0.0	W/16466008-16466722,16466872-16467351,16467440-16467526,16467617-16467687,16467798-16467874,16467957-16468101,16468195-16468356,16468473-16468748	AT4G34440.1  CDS  gene_syn T4L20.20, T4L20_20  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G18810.1); Has 211907 Blast hits to 141567 proteins in 4043 species: Archae - 307; Bacteria - 28887; Metazoa - 86861; Fungi - 25855; Plants - 31095; Viruses - 4149; Other Eukaryotes - 34753 (source: NCBI BLink).  protein_id AT4G34440.1p  transcript_id AT4G34440.1  protein_id AT4G34440.1p  transcript_id AT4G34440.1  
At4g34450	chr4:016471956	0.0	W/16471956-16472001,16472226-16472374,16472477-16472590,16472681-16472881,16472961-16473062,16473497-16473604,16473685-16473918,16474058-16474308,16474441-16474612,16474686-16474841,16474913-16474963,16475146-16475283,16475363-16475560,16475642-16475773,16475858-16476031,16476228-16476467,16476601-16476795	AT4G34450.1  CDS  gene_syn T4L20.30, T4L20_30  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function structural molecule activity|GO:0005198||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function clathrin binding|GO:0030276||ISS  product coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative  note coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative; FUNCTIONS IN: protein binding, clathrin binding, structural molecule activity, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Coatomer, gamma subunit, appendage, Ig-like subdomain (InterPro:IPR013040), Armadillo-like helical (InterPro:IPR011989), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553), Coatomer, gamma subunit (InterPro:IPR017106), Coatomer, gamma subunit , appendage (InterPro:IPR014863), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028), Clathrin alpha-adaptin/coatomer adaptor, appendage, C-terminal subdomain (InterPro:IPR015873), Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain (InterPro:IPR013041); BEST Arabidopsis thaliana protein match is: protein binding / structural molecule (TAIR:AT2G16200.1); Has 1246 Blast hits to 1241 proteins in 162 species: Archae - 0; Bacteria - 2; Metazoa - 606; Fungi - 289; Plants - 90; Viruses - 0; Other Eukaryotes - 259 (source: NCBI BLink).  protein_id AT4G34450.1p  transcript_id AT4G34450.1  protein_id AT4G34450.1p  transcript_id AT4G34450.1  
At4g34460	chr4:016478330	0.0	C/16478330-16478769,16477724-16478081,16477521-16477634,16477393-16477428	AT4G34460.2  CDS  gene_syn AGB1, ARABIDOPSIS G-PROTEIN BETA SUBUNIT, ELK4, ERECTA-LIKE 4, GTP BINDING PROTEIN BETA 1, T4L20.40, T4L20_40  gene AGB1  function Encodes the heterotrimeric G-protein beta subunit and is involved in organ shape. A significant fraction of the protein is found in the ER. Mutants carrying null alleles express similar fruit phenotypes, as seen in er plants, but differ from er in that the stem is only slightly shorter than that in the wild type, the pedicel is slightly longer than that in the wild type, and the leaves are rounder than those in er mutants. Gene is expressed in all tissues examined, with highest expression level found in siliques. It is involved in resistance to Plectosphaerella cucumerina. The predicted protein has two DWD motifs. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase  go_component plasma membrane|GO:0005886|17317660|IDA  go_component endoplasmic reticulum|GO:0005783|17360436|IDA  go_component heterotrimeric G-protein complex|GO:0005834|11121078|IPI  go_component heterotrimeric G-protein complex|GO:0005834|11752377|ISS  go_component heterotrimeric G-protein complex|GO:0005834|9054368|ISS  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|IPI  go_process oxygen and reactive oxygen species metabolic process|GO:0006800|15705948|IMP  go_process response to ethylene stimulus|GO:0009723|18397373|IMP  go_process defense response to fungus, incompatible interaction|GO:0009817|18441222|IMP  go_process seed germination|GO:0009845|18441222|IMP  go_process jasmonic acid mediated signaling pathway|GO:0009867|16339801|IMP  go_process organ morphogenesis|GO:0009887|11752377|IMP  go_process fruit development|GO:0010154|11752377|IMP  go_process endoplasmic reticulum unfolded protein response|GO:0030968|17360436|IMP  go_process root development|GO:0048364|18397373|IMP  go_process lateral root development|GO:0048527|18441222|IMP  go_process defense response to fungus|GO:0050832|15998304|IMP  go_process defense response to fungus|GO:0050832|16339801|IMP  go_function nucleotide binding|GO:0000166||ISS  go_function GTPase activity|GO:0003924|11752377|ISS  go_function protein binding|GO:0005515|18223036|IPI  product AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein binding  note GTP BINDING PROTEIN BETA 1 (AGB1); FUNCTIONS IN: protein binding, GTPase activity, nucleotide binding; INVOLVED IN: in 11 processes; LOCATED IN: endoplasmic reticulum, plasma membrane, CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), Guanine nucleotide-binding protein, beta subunit (InterPro:IPR016346), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), G-protein, beta subunit (InterPro:IPR001632); BEST Arabidopsis thaliana protein match is: HOS15 (high expression of osmotically responsive genes 15) (TAIR:AT5G67320.1); Has 41505 Blast hits to 20133 proteins in 630 species: Archae - 44; Bacteria - 5731; Metazoa - 18296; Fungi - 7871; Plants - 3868; Viruses - 0; Other Eukaryotes - 5695 (source: NCBI BLink).  protein_id AT4G34460.2p  transcript_id AT4G34460.2  protein_id AT4G34460.2p  transcript_id AT4G34460.2  
At4g34460	chr4:016479161	0.0	C/16479161-16479266,16478994-16479073,16478330-16478754,16477724-16478081,16477521-16477634,16477393-16477428	AT4G34460.4  CDS  gene_syn AGB1, ARABIDOPSIS G-PROTEIN BETA SUBUNIT, ELK4, ERECTA-LIKE 4, GTP BINDING PROTEIN BETA 1, T4L20.40, T4L20_40  gene AGB1  function Encodes the heterotrimeric G-protein beta subunit and is involved in organ shape. A significant fraction of the protein is found in the ER. Mutants carrying null alleles express similar fruit phenotypes, as seen in er plants, but differ from er in that the stem is only slightly shorter than that in the wild type, the pedicel is slightly longer than that in the wild type, and the leaves are rounder than those in er mutants. Gene is expressed in all tissues examined, with highest expression level found in siliques. It is involved in resistance to Plectosphaerella cucumerina. The predicted protein has two DWD motifs. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase  go_component plasma membrane|GO:0005886|17317660|IDA  go_component endoplasmic reticulum|GO:0005783|17360436|IDA  go_component heterotrimeric G-protein complex|GO:0005834|11121078|IPI  go_component heterotrimeric G-protein complex|GO:0005834|11752377|ISS  go_component heterotrimeric G-protein complex|GO:0005834|9054368|ISS  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|IPI  go_process oxygen and reactive oxygen species metabolic process|GO:0006800|15705948|IMP  go_process response to ethylene stimulus|GO:0009723|18397373|IMP  go_process defense response to fungus, incompatible interaction|GO:0009817|18441222|IMP  go_process seed germination|GO:0009845|18441222|IMP  go_process jasmonic acid mediated signaling pathway|GO:0009867|16339801|IMP  go_process organ morphogenesis|GO:0009887|11752377|IMP  go_process fruit development|GO:0010154|11752377|IMP  go_process endoplasmic reticulum unfolded protein response|GO:0030968|17360436|IMP  go_process root development|GO:0048364|18397373|IMP  go_process lateral root development|GO:0048527|18441222|IMP  go_process defense response to fungus|GO:0050832|15998304|IMP  go_process defense response to fungus|GO:0050832|16339801|IMP  go_function nucleotide binding|GO:0000166||ISS  go_function GTPase activity|GO:0003924|11752377|ISS  go_function protein binding|GO:0005515|18223036|IPI  product AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein binding  note GTP BINDING PROTEIN BETA 1 (AGB1); FUNCTIONS IN: protein binding, GTPase activity, nucleotide binding; INVOLVED IN: in 11 processes; LOCATED IN: endoplasmic reticulum, plasma membrane, CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), Guanine nucleotide-binding protein, beta subunit (InterPro:IPR016346), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), G-protein, beta subunit (InterPro:IPR001632); BEST Arabidopsis thaliana protein match is: HOS15 (high expression of osmotically responsive genes 15) (TAIR:AT5G67320.1); Has 44346 Blast hits to 21268 proteins in 637 species: Archae - 38; Bacteria - 5549; Metazoa - 20177; Fungi - 8319; Plants - 4028; Viruses - 0; Other Eukaryotes - 6235 (source: NCBI BLink).  protein_id AT4G34460.4p  transcript_id AT4G34460.4  protein_id AT4G34460.4p  transcript_id AT4G34460.4  
At4g34460	chr4:016479161	0.0	C/16479161-16479266,16478994-16479088,16478330-16478754,16477724-16478081,16477521-16477634,16477393-16477428	AT4G34460.1  CDS  gene_syn AGB1, ARABIDOPSIS G-PROTEIN BETA SUBUNIT, ELK4, ERECTA-LIKE 4, GTP BINDING PROTEIN BETA 1, T4L20.40, T4L20_40  gene AGB1  function Encodes the heterotrimeric G-protein beta subunit and is involved in organ shape. A significant fraction of the protein is found in the ER. Mutants carrying null alleles express similar fruit phenotypes, as seen in er plants, but differ from er in that the stem is only slightly shorter than that in the wild type, the pedicel is slightly longer than that in the wild type, and the leaves are rounder than those in er mutants. Gene is expressed in all tissues examined, with highest expression level found in siliques. It is involved in resistance to Plectosphaerella cucumerina. The predicted protein has two DWD motifs. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase  go_component plasma membrane|GO:0005886|17317660|IDA  go_component endoplasmic reticulum|GO:0005783|17360436|IDA  go_component heterotrimeric G-protein complex|GO:0005834|11121078|IPI  go_component heterotrimeric G-protein complex|GO:0005834|11752377|ISS  go_component heterotrimeric G-protein complex|GO:0005834|9054368|ISS  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|IPI  go_process oxygen and reactive oxygen species metabolic process|GO:0006800|15705948|IMP  go_process response to ethylene stimulus|GO:0009723|18397373|IMP  go_process defense response to fungus, incompatible interaction|GO:0009817|18441222|IMP  go_process seed germination|GO:0009845|18441222|IMP  go_process jasmonic acid mediated signaling pathway|GO:0009867|16339801|IMP  go_process organ morphogenesis|GO:0009887|11752377|IMP  go_process fruit development|GO:0010154|11752377|IMP  go_process endoplasmic reticulum unfolded protein response|GO:0030968|17360436|IMP  go_process root development|GO:0048364|18397373|IMP  go_process lateral root development|GO:0048527|18441222|IMP  go_process defense response to fungus|GO:0050832|15998304|IMP  go_process defense response to fungus|GO:0050832|16339801|IMP  go_function nucleotide binding|GO:0000166||ISS  go_function GTPase activity|GO:0003924|11752377|ISS  go_function protein binding|GO:0005515|18223036|IPI  product AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein binding  note GTP BINDING PROTEIN BETA 1 (AGB1); FUNCTIONS IN: protein binding, GTPase activity, nucleotide binding; INVOLVED IN: in 11 processes; LOCATED IN: endoplasmic reticulum, plasma membrane, CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943), Guanine nucleotide-binding protein, beta subunit (InterPro:IPR016346), G-protein, beta subunit (InterPro:IPR001632); BEST Arabidopsis thaliana protein match is: HOS15 (high expression of osmotically responsive genes 15) (TAIR:AT5G67320.1); Has 44471 Blast hits to 21257 proteins in 637 species: Archae - 42; Bacteria - 5663; Metazoa - 20246; Fungi - 8331; Plants - 3987; Viruses - 0; Other Eukaryotes - 6202 (source: NCBI BLink).  protein_id AT4G34460.1p  transcript_id AT4G34460.1  protein_id AT4G34460.1p  transcript_id AT4G34460.1  
At4g34460	chr4:016479161	0.0	C/16479161-16479266,16478994-16479088,16478330-16478754,16477724-16478081,16477586-16477645	AT4G34460.3  CDS  gene_syn AGB1, ARABIDOPSIS G-PROTEIN BETA SUBUNIT, ELK4, ERECTA-LIKE 4, GTP BINDING PROTEIN BETA 1, T4L20.40, T4L20_40  gene AGB1  function Encodes the heterotrimeric G-protein beta subunit and is involved in organ shape. A significant fraction of the protein is found in the ER. Mutants carrying null alleles express similar fruit phenotypes, as seen in er plants, but differ from er in that the stem is only slightly shorter than that in the wild type, the pedicel is slightly longer than that in the wild type, and the leaves are rounder than those in er mutants. Gene is expressed in all tissues examined, with highest expression level found in siliques. It is involved in resistance to Plectosphaerella cucumerina. The predicted protein has two DWD motifs. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase  go_component plasma membrane|GO:0005886|17317660|IDA  go_component endoplasmic reticulum|GO:0005783|17360436|IDA  go_component heterotrimeric G-protein complex|GO:0005834|11121078|IPI  go_component heterotrimeric G-protein complex|GO:0005834|11752377|ISS  go_component heterotrimeric G-protein complex|GO:0005834|9054368|ISS  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|IPI  go_process oxygen and reactive oxygen species metabolic process|GO:0006800|15705948|IMP  go_process response to ethylene stimulus|GO:0009723|18397373|IMP  go_process defense response to fungus, incompatible interaction|GO:0009817|18441222|IMP  go_process seed germination|GO:0009845|18441222|IMP  go_process jasmonic acid mediated signaling pathway|GO:0009867|16339801|IMP  go_process organ morphogenesis|GO:0009887|11752377|IMP  go_process fruit development|GO:0010154|11752377|IMP  go_process endoplasmic reticulum unfolded protein response|GO:0030968|17360436|IMP  go_process root development|GO:0048364|18397373|IMP  go_process lateral root development|GO:0048527|18441222|IMP  go_process defense response to fungus|GO:0050832|15998304|IMP  go_process defense response to fungus|GO:0050832|16339801|IMP  go_function nucleotide binding|GO:0000166||ISS  go_function GTPase activity|GO:0003924|11752377|ISS  go_function protein binding|GO:0005515|18223036|IPI  product AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein binding  note GTP BINDING PROTEIN BETA 1 (AGB1); FUNCTIONS IN: protein binding, GTPase activity, nucleotide binding; INVOLVED IN: in 11 processes; LOCATED IN: endoplasmic reticulum, plasma membrane, CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), Guanine nucleotide-binding protein, beta subunit (InterPro:IPR016346), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), G-protein, beta subunit (InterPro:IPR001632); BEST Arabidopsis thaliana protein match is: TAF5 (TBP-ASSOCIATED FACTOR 5); nucleotide binding / transcription regulator (TAIR:AT5G25150.1); Has 39670 Blast hits to 20015 proteins in 574 species: Archae - 46; Bacteria - 5126; Metazoa - 17309; Fungi - 7921; Plants - 3706; Viruses - 0; Other Eukaryotes - 5562 (source: NCBI BLink).  protein_id AT4G34460.3p  transcript_id AT4G34460.3  protein_id AT4G34460.3p  transcript_id AT4G34460.3  
At4g34470	chr4:016480022	0.0	C/16480022-16480480	AT4G34470.1  CDS  gene_syn ARABIDOPSIS SKP1-LIKE 12, ASK12, T4L20.50, T4L20_50  gene ASK12  go_component endomembrane system|GO:0012505||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|14749489|ISS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|14749489|IPI  product ASK12 (ARABIDOPSIS SKP1-LIKE 12); protein binding / ubiquitin-protein ligase  note ARABIDOPSIS SKP1-LIKE 12 (ASK12); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: ASK11 (ARABIDOPSIS SKP1-LIKE 11); protein binding / ubiquitin-protein ligase (TAIR:AT4G34210.1); Has 1104 Blast hits to 1101 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 489; Fungi - 114; Plants - 363; Viruses - 11; Other Eukaryotes - 127 (source: NCBI BLink).  protein_id AT4G34470.1p  transcript_id AT4G34470.1  protein_id AT4G34470.1p  transcript_id AT4G34470.1  
At4g34480	chr4:016483928	0.0	C/16483928-16483988,16483541-16483836,16483100-16483468,16481972-16482304,16481589-16481850,16481147-16481340	AT4G34480.1  CDS  gene_syn T4L20.60, T4L20_60  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT2G16230.1); Has 1388 Blast hits to 1379 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 5; Plants - 1380; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G34480.1p  transcript_id AT4G34480.1  protein_id AT4G34480.1p  transcript_id AT4G34480.1  
At4g34490	chr4:016487056	0.0	C/16487056-16487355,16486793-16486961,16486638-16486702,16486173-16486467,16485929-16486076,16485725-16485834,16485580-16485635,16485434-16485490,16485132-16485275,16484896-16484982	AT4G34490.1  CDS  gene_syn ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1, ATCAP1, CAP 1, CAP1, CYCLASE ASSOCIATED PROTEIN 1, T4L20.70, T4L20_70  gene ATCAP1  function CYCLASE ASSOCIATED PROTEIN  go_process unidimensional cell growth|GO:0009826|11826305|IMP  go_process actin cytoskeleton organization|GO:0030036|11826305|TAS  go_function actin binding|GO:0003779|11826305|IPI  product ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1); actin binding  note ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1 (ATCAP1); FUNCTIONS IN: actin binding; INVOLVED IN: unidimensional cell growth, actin cytoskeleton organization; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal (InterPro:IPR016098), CAP, conserved site (InterPro:IPR018106), Adenylate cyclase-associated CAP (InterPro:IPR001837), CARP motif (InterPro:IPR006599), Adenylate cyclase-associated CAP, N-terminal (InterPro:IPR013992), C-CAP/cofactor C-like domain (InterPro:IPR017901), Adenylate cyclase-associated CAP, C-terminal (InterPro:IPR013912); Has 479 Blast hits to 474 proteins in 150 species: Archae - 0; Bacteria - 2; Metazoa - 256; Fungi - 106; Plants - 27; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT4G34490.1p  transcript_id AT4G34490.1  protein_id AT4G34490.1p  transcript_id AT4G34490.1  
At4g34500	chr4:016490257	0.0	C/16490257-16490792,16489096-16489206,16488886-16489008,16488628-16488798,16488406-16488535,16488115-16488324,16488005-16488037	AT4G34500.1  CDS  gene_syn T4L20.80, T4L20_80  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G01540.2); Has 83624 Blast hits to 82760 proteins in 3144 species: Archae - 56; Bacteria - 7993; Metazoa - 36820; Fungi - 6439; Plants - 18049; Viruses - 382; Other Eukaryotes - 13885 (source: NCBI BLink).  protein_id AT4G34500.1p  transcript_id AT4G34500.1  protein_id AT4G34500.1p  transcript_id AT4G34500.1  
At4g34510	chr4:016491796	0.0	W/16491796-16493259	AT4G34510.1  CDS  gene_syn 3-KETOACYL-COA SYNTHASE 17, KCS17, T4L20.90, T4L20_90  gene KCS17  function Encodes KCS17, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).  go_component membrane|GO:0016020||IEA  go_function catalytic activity|GO:0003824||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_process very-long-chain fatty acid metabolic process|GO:0000038|7734965|IMP  go_process fatty acid elongation|GO:0030497|7734965|IMP  go_function acyltransferase activity|GO:0008415||ISS  product KCS17 (3-KETOACYL-COA SYNTHASE 17); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups  note 3-KETOACYL-COA SYNTHASE 17 (KCS17); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: fatty acid elongation, very-long-chain fatty acid metabolic process; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038), Chalcone and stilbene synthases, C-terminal (InterPro:IPR012328); BEST Arabidopsis thaliana protein match is: KCS9 (3-KETOACYL-COA SYNTHASE 9); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups (TAIR:AT2G16280.1); Has 3521 Blast hits to 3513 proteins in 800 species: Archae - 0; Bacteria - 1014; Metazoa - 0; Fungi - 7; Plants - 2381; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT4G34510.1p  transcript_id AT4G34510.1  protein_id AT4G34510.1p  transcript_id AT4G34510.1  
At4g34520	chr4:016494205	0.0	W/16494205-16495725	AT4G34520.1  CDS  gene_syn FAE1, FATTY ACID ELONGATION1, KCS18, T4L20.100, T4L20_100  gene KCS18  function Encodes KCS18, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process very-long-chain fatty acid metabolic process|GO:0000038|7734965|IMP  go_process fatty acid elongation|GO:0030497|7734965|IMP  go_function acyltransferase activity|GO:0008415||ISS  go_function fatty acid elongase activity|GO:0009922|11341960|IDA  product KCS18; acyltransferase/ fatty acid elongase  note KCS18; FUNCTIONS IN: fatty acid elongase activity, acyltransferase activity; INVOLVED IN: fatty acid elongation, very-long-chain fatty acid metabolic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: shoot apex, stem, fruit, carpel; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038), Chalcone and stilbene synthases, C-terminal (InterPro:IPR012328); BEST Arabidopsis thaliana protein match is: KCS9 (3-KETOACYL-COA SYNTHASE 9); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups (TAIR:AT2G16280.1); Has 3518 Blast hits to 3511 proteins in 849 species: Archae - 0; Bacteria - 1069; Metazoa - 0; Fungi - 8; Plants - 2306; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).  protein_id AT4G34520.1p  transcript_id AT4G34520.1  protein_id AT4G34520.1p  transcript_id AT4G34520.1  
At4g34530	chr4:016498466	0.0	W/16498466-16498768,16498872-16499132,16499220-16499354,16499448-16499519,16499614-16499784,16499881-16499946	AT4G34530.1  CDS  gene_syn CIB1, CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 1, T4L20.110, T4L20_110  gene CIB1  function Encodes a transcription factor CIB1 (cryptochrome-interacting basic-helix-loop-helix). CIB1 interacts with CRY2 (cryptochrome 2) in a blue light-specific manner in yeast and Arabidopsis cells, and it acts together with additional CIB1-related proteins to promote CRY2-dependent floral initiation. CIB1 positively regulates FT expression.  go_component nucleus|GO:0005634|18988809|IDA  go_process transcription, DNA-dependent|GO:0006351|18988809|IDA  go_process positive regulation of flower development|GO:0009911|18988809|IMP  go_function DNA binding|GO:0003677|18988809|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700|18988809|IDA  product CIB1 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 1); DNA binding / transcription factor  note CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 1 (CIB1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: positive regulation of flower development, transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: vascular bundle; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT1G68920.2); Has 1296 Blast hits to 1292 proteins in 101 species: Archae - 0; Bacteria - 6; Metazoa - 27; Fungi - 22; Plants - 1204; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT4G34530.1p  transcript_id AT4G34530.1  protein_id AT4G34530.1p  transcript_id AT4G34530.1  
At4g34540	chr4:016500506	0.0	W/16500506-16500682,16500819-16500953,16501132-16501369,16501474-16501677,16501766-16501932	AT4G34540.1  CDS  gene_syn T4L20.120, T4L20_120  function encodes a protein whose sequence is similar to pinoresinol-lariciresinol reductase from pine.  go_process regulation of nitrogen utilization|GO:0006808||IEA  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function pinoresinol reductase activity|GO:0010283|10066819|ISS  product isoflavone reductase family protein  note isoflavone reductase family protein; FUNCTIONS IN: pinoresinol reductase activity; INVOLVED IN: regulation of nitrogen utilization, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: isoflavone reductase, putative (TAIR:AT1G75280.1); Has 1280 Blast hits to 1278 proteins in 308 species: Archae - 6; Bacteria - 432; Metazoa - 6; Fungi - 267; Plants - 369; Viruses - 7; Other Eukaryotes - 193 (source: NCBI BLink).  protein_id AT4G34540.1p  transcript_id AT4G34540.1  protein_id AT4G34540.1p  transcript_id AT4G34540.1  
At4g34550	chr4:016503201	0.0	W/16503201-16504040	AT4G34550.1  CDS  gene_syn T4L20.130, T4L20_130  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G16365.3); Has 23 Blast hits to 23 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G34550.1p  transcript_id AT4G34550.1  protein_id AT4G34550.1p  transcript_id AT4G34550.1  
At4g34555	chr4:016505337	0.0	C/16505337-16505339,16505169-16505243,16504890-16505024,16504381-16504494	AT4G34555.1  CDS  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S25, putative  note 40S ribosomal protein S25, putative; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S25 (InterPro:IPR004977); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S25 (RPS25E) (TAIR:AT4G39200.2); Has 500 Blast hits to 500 proteins in 178 species: Archae - 3; Bacteria - 0; Metazoa - 227; Fungi - 100; Plants - 93; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT4G34555.1p  transcript_id AT4G34555.1  protein_id AT4G34555.1p  transcript_id AT4G34555.1  
At4g34560	chr4:016507923	0.0	W/16507923-16508588	AT4G34560.1  CDS  gene_syn T4L20.140, T4L20_140  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66440.1); Has 35 Blast hits to 34 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G34560.1p  transcript_id AT4G34560.1  protein_id AT4G34560.1p  transcript_id AT4G34560.1  
At4g34570	chr4:016514106	0.0	C/16514106-16514110,16513832-16513877,16513053-16513555,16512585-16512972,16512450-16512494,16512276-16512341,16512091-16512152,16511933-16512007,16511552-16511841,16511359-16511465,16511129-16511239	AT4G34570.1  CDS  gene_syn DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE, T4L20.150, T4L20_150, THY-2, thymidylate synthase 2  gene THY-2  function Encodes a bifunctional dihydrofolate reductase - thymidylate synthase gene. This is unique in Arabidopsis and protozoa. Other organisms have independent genes for this function.  go_process 10-formyltetrahydrofolate biosynthetic process|GO:0009257|8374616|ISS  go_function dihydrofolate reductase activity|GO:0004146|8374616|ISS  go_function thymidylate synthase activity|GO:0004799|8374616|ISS  product THY-2 (thymidylate synthase 2); dihydrofolate reductase/ thymidylate synthase  note thymidylate synthase 2 (THY-2); FUNCTIONS IN: thymidylate synthase activity, dihydrofolate reductase activity; INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process; CONTAINS InterPro DOMAIN/s: Dihydrofolate reductase region (InterPro:IPR001796), Dihydrofolate reductase conserved site (InterPro:IPR017925), Bifunctional dihydrofolate reductase/thymidylate synthase (InterPro:IPR012262), Thymidylate synthase, C-terminal (InterPro:IPR000398); BEST Arabidopsis thaliana protein match is: THY-1 (THYMIDYLATE SYNTHASE 1); dihydrofolate reductase/ thymidylate synthase (TAIR:AT2G16370.1); Has 8910 Blast hits to 8894 proteins in 1509 species: Archae - 47; Bacteria - 4695; Metazoa - 399; Fungi - 312; Plants - 53; Viruses - 217; Other Eukaryotes - 3187 (source: NCBI BLink).  protein_id AT4G34570.1p  transcript_id AT4G34570.1  protein_id AT4G34570.1p  transcript_id AT4G34570.1  
At4g34580	chr4:016515422	0.0	W/16515422-16515440,16515521-16515773,16516338-16516437,16516541-16516807,16516897-16516974,16517051-16517202,16517296-16517395,16517494-16517583,16517660-16517792,16517863-16518245,16518347-16518421,16518513-16518527	AT4G34580.1  CDS  gene_syn CAN OF WORMS1, COW1, SHORT ROOT HAIR 1, SRH1, T4L20.160, T4L20_160  gene COW1  function Encodes COW1 (can of worms1), a phosphatidylinositol transfer protein essential for root hair tip growth. The N-terminus of the COW1 protein is 32% identical to an essential phosphatidylinositol transfer protein (PITP), the yeast Sec14 protein (sec14p) while the C-terminus is 34.5% identical to a late nodulin of Lotus japonicus, Nlj16. Expression of COW1 complements the growth defect associated with Sec14p dysfunction in yeast. GFP fused to the COW1 protein specifically accumulates at the site of root hair outgrowth.  go_component intracellular|GO:0005622||IEA  go_process cell tip growth|GO:0009932|9390433|IMP  go_process root epidermal cell differentiation|GO:0010053|9390433|IMP  go_process transport|GO:0006810||ISS  go_process root hair cell tip growth|GO:0048768|15546352|IMP  go_function transporter activity|GO:0005215||ISS  go_function phosphatidylinositol transporter activity|GO:0008526|15546352|IGI  product COW1 (CAN OF WORMS1); phosphatidylinositol transporter/ transporter  note CAN OF WORMS1 (COW1); FUNCTIONS IN: phosphatidylinositol transporter activity, transporter activity; INVOLVED IN: root epidermal cell differentiation, transport, root hair cell tip growth, cell tip growth; LOCATED IN: intracellular; EXPRESSED IN: 9 plant structures; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT2G16380.1); Has 2076 Blast hits to 2069 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 823; Fungi - 446; Plants - 475; Viruses - 0; Other Eukaryotes - 332 (source: NCBI BLink).  protein_id AT4G34580.1p  transcript_id AT4G34580.1  protein_id AT4G34580.1p  transcript_id AT4G34580.1  
At4g34588	chr4:016522098	0.0	W/16522098-16522226	AT4G34588.1  CDS  gene_syn CPuORF2, Conserved peptide upstream open reading frame 2  gene CPuORF2  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF2 represents a conserved upstream opening reading frame relative to major ORF AT4G34590.1  go_component endomembrane system|GO:0012505||IEA  product CPuORF2 (Conserved peptide upstream open reading frame 2)  note Conserved peptide upstream open reading frame 2 (CPuORF2); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: CPuORF5 (Conserved peptide upstream open reading frame 5) (TAIR:AT1G75388.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G34588.1p  transcript_id AT4G34588.1  protein_id AT4G34588.1p  transcript_id AT4G34588.1  
At4g34590	chr4:016522449	0.0	W/16522449-16522928	AT4G34590.1  CDS  gene_syn ATB2, ATBZIP11, Arabidopsis thaliana basic leucine-zipper 11, AtbZIP11, BZIP11, G-BOX BINDING FACTOR 6, GBF6, T4L20.170, T4L20_170  gene GBF6  function Encodes a basic domain leucine zipper (bZip) transcription factor bZIP11. Translation is repressed by sucrose. Directly regulates gene expression of ASN1 and ProDH2, which are enzyme-coding genes involved in amino acid metabolism.  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to sucrose stimulus|GO:0009744|9721683|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700|18088315|IDA  go_function transcription factor activity|GO:0003700|9620274|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function protein heterodimerization activity|GO:0046982|16709202|IPI  product GBF6 (G-BOX BINDING FACTOR 6); DNA binding / protein heterodimerization/ transcription factor  note G-BOX BINDING FACTOR 6 (GBF6); FUNCTIONS IN: transcription factor activity, protein heterodimerization activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, response to sucrose stimulus; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: AtbZIP44 (Arabidopsis thaliana basic leucine-zipper 44); DNA binding / protein heterodimerization/ transcription factor (TAIR:AT1G75390.1); Has 1114 Blast hits to 1114 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 2; Plants - 1075; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT4G34590.1p  transcript_id AT4G34590.1  protein_id AT4G34590.1p  transcript_id AT4G34590.1  
At4g34600	chr4:016529280	0.0	W/16529280-16529364,16529640-16529686,16529839-16529958	AT4G34600.1  CDS  gene_syn T4L20.180, T4L20_180  go_component endomembrane system|GO:0012505||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16385.1); Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G34600.1p  transcript_id AT4G34600.1  protein_id AT4G34600.1p  transcript_id AT4G34600.1  
At4g34610	chr4:016531848	0.0	C/16531848-16532498,16531289-16531656,16531152-16531212,16530546-16531064	AT4G34610.1  CDS  gene_syn BELL1-LIKE HOMEODOMAIN 6, BLH6, T4L20.190, T4L20_190  gene BLH6  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product BLH6 (BELL1-LIKE HOMEODOMAIN 6); DNA binding / transcription factor  note BELL1-LIKE HOMEODOMAIN 6 (BLH6); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BLH7 (bell1-like homeodomain 7); DNA binding / transcription factor (TAIR:AT2G16400.1); Has 3897 Blast hits to 3897 proteins in 256 species: Archae - 0; Bacteria - 2; Metazoa - 1580; Fungi - 183; Plants - 2033; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).  protein_id AT4G34610.1p  transcript_id AT4G34610.1  protein_id AT4G34610.1p  transcript_id AT4G34610.1  
At4g34610	chr4:016531848	0.0	C/16531848-16532498,16531289-16531656,16531152-16531212,16530546-16531064	AT4G34610.2  CDS  gene_syn BELL1-LIKE HOMEODOMAIN 6, BLH6, T4L20.190, T4L20_190  gene BLH6  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product BLH6 (BELL1-LIKE HOMEODOMAIN 6); DNA binding / transcription factor  note BELL1-LIKE HOMEODOMAIN 6 (BLH6); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BLH7 (bell1-like homeodomain 7); DNA binding / transcription factor (TAIR:AT2G16400.1); Has 3897 Blast hits to 3897 proteins in 256 species: Archae - 0; Bacteria - 2; Metazoa - 1580; Fungi - 183; Plants - 2033; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).  protein_id AT4G34610.2p  transcript_id AT4G34610.2  protein_id AT4G34610.2p  transcript_id AT4G34610.2  
At4g34620	chr4:016535960	0.0	C/16535960-16536092,16535817-16535862,16535084-16535246	AT4G34620.1  CDS  gene_syn RIBOSOMAL PROTEIN S16, SMALL SUBUNIT RIBOSOMAL PROTEIN 16, SSR16, T4L20.200, T4L20_200  gene SSR16  function Encodes ribosomal protein S16, has embryo-defective lethal mutant phenotype  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component ribosome|GO:0005840|8811862|TAS  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_process embryonic development ending in seed dormancy|GO:0009793|8811862|IMP  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735|8811862|ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16); structural constituent of ribosome  note SMALL SUBUNIT RIBOSOMAL PROTEIN 16 (SSR16); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: embryonic development ending in seed dormancy, translation, ribosome biogenesis; LOCATED IN: ribosome, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S16 (InterPro:IPR000307); BEST Arabidopsis thaliana protein match is: ribosomal protein S16 family protein (TAIR:AT5G56940.1); Has 5866 Blast hits to 5866 proteins in 1698 species: Archae - 0; Bacteria - 2933; Metazoa - 109; Fungi - 86; Plants - 466; Viruses - 0; Other Eukaryotes - 2272 (source: NCBI BLink).  protein_id AT4G34620.1p  transcript_id AT4G34620.1  protein_id AT4G34620.1p  transcript_id AT4G34620.1  
At4g34630	chr4:016537093	0.0	C/16537093-16537692	AT4G34630.1  CDS  gene_syn T4L20.210, T4L20_210  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; Has 14 Blast hits to 14 proteins in 5 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G34630.1p  transcript_id AT4G34630.1  protein_id AT4G34630.1p  transcript_id AT4G34630.1  
At4g34640	chr4:016538489	0.0	W/16538489-16538683,16539042-16539084,16539234-16539323,16539415-16539490,16539652-16539721,16539996-16540145,16540254-16540358,16540461-16540607,16540783-16540858,16541019-16541107,16541205-16541296,16541463-16541505,16541599-16541655	AT4G34640.1  CDS  gene_syn ERG9, SQS1, SQUALENE SYNTHASE, SQUALENE SYNTHASE 1, T4L20.220, T4L20_220  gene SQS1  function Encodes squalene synthase, which converts two molecules of farnesyl diphosphate (FPP) into squalene via an intermediate: presqualene diphosphate (PSPP). It is generally thought to be one of the key enzymes of sterol biosynthesis, since it catalyzes the first pathway-specific reaction of the sterol branch of the isoprenoid pathway.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum|GO:0005783|18236008|IDA  go_component endoplasmic reticulum membrane|GO:0005789|9363754|TAS  go_process sterol biosynthetic process|GO:0016126|7892265|TAS  go_function farnesyl-diphosphate farnesyltransferase activity|GO:0004310|7892265|IDA  go_function farnesyl-diphosphate farnesyltransferase activity|GO:0004310|7892265|ISS  go_function farnesyl-diphosphate farnesyltransferase activity|GO:0004310||ISS  product SQS1 (SQUALENE SYNTHASE 1); farnesyl-diphosphate farnesyltransferase  note SQUALENE SYNTHASE 1 (SQS1); FUNCTIONS IN: farnesyl-diphosphate farnesyltransferase activity; INVOLVED IN: sterol biosynthetic process; LOCATED IN: endoplasmic reticulum, plasma membrane, endoplasmic reticulum membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid synthase (InterPro:IPR008949), Farnesyl-diphosphate farnesyltransferase (InterPro:IPR006449), Squalene/phytoene synthase (InterPro:IPR002060); BEST Arabidopsis thaliana protein match is: SQS2 (SQUALENE SYNTHASE 2); farnesyl-diphosphate farnesyltransferase (TAIR:AT4G34650.1); Has 917 Blast hits to 916 proteins in 322 species: Archae - 10; Bacteria - 339; Metazoa - 99; Fungi - 120; Plants - 204; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink).  protein_id AT4G34640.1p  transcript_id AT4G34640.1  protein_id AT4G34640.1p  transcript_id AT4G34640.1  
At4g34650	chr4:016542377	0.0	W/16542377-16542571,16542656-16542698,16542832-16542921,16543009-16543084,16543212-16543281,16543386-16543535,16543637-16543741,16543822-16543968,16544082-16544157,16544287-16544375,16544452-16544543,16544711-16544753,16544850-16544915	AT4G34650.1  CDS  gene_syn SQS2, SQUALENE SYNTHASE 2, T4L20.230, T4L20_230  gene SQS2  function Encodes a protein with similarity to squalene synthase which catalyzes the first committed step in sterol biosynthesis. To date no experimental evidence exists that SQS2 functions as a squalene synthase and some experiments indicate it does not have this function.  go_component integral to membrane|GO:0016021||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process sterol biosynthetic process|GO:0016126|9363754|ISS  go_function farnesyl-diphosphate farnesyltransferase activity|GO:0004310|18236008|IGI  go_function farnesyl-diphosphate farnesyltransferase activity|GO:0004310|9363754|IDA  go_function farnesyl-diphosphate farnesyltransferase activity|GO:0004310|9363754|ISS  go_function farnesyl-diphosphate farnesyltransferase activity|GO:0004310||ISS  product SQS2 (SQUALENE SYNTHASE 2); farnesyl-diphosphate farnesyltransferase  note SQUALENE SYNTHASE 2 (SQS2); FUNCTIONS IN: farnesyl-diphosphate farnesyltransferase activity; INVOLVED IN: N-terminal protein myristoylation, sterol biosynthetic process; LOCATED IN: integral to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Terpenoid synthase (InterPro:IPR008949), Farnesyl-diphosphate farnesyltransferase (InterPro:IPR006449), Squalene/phytoene synthase (InterPro:IPR002060); BEST Arabidopsis thaliana protein match is: SQS1 (SQUALENE SYNTHASE 1); farnesyl-diphosphate farnesyltransferase (TAIR:AT4G34640.1); Has 733 Blast hits to 731 proteins in 292 species: Archae - 14; Bacteria - 305; Metazoa - 100; Fungi - 114; Plants - 93; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT4G34650.1p  transcript_id AT4G34650.1  protein_id AT4G34650.1p  transcript_id AT4G34650.1  
At4g34660	chr4:016548235	0.0	C/16548235-16548294,16547666-16547779,16547518-16547587,16547257-16547408,16546902-16547003,16546566-16546766,16546413-16546475,16546140-16546292,16545835-16545909,16545595-16545711	AT4G34660.1  CDS  gene_syn T4L20.240, T4L20_240  go_process biological_process|GO:0008150||ND  go_function clathrin binding|GO:0030276|11701884|ISS  product SH3 domain-containing protein 2 (SH3P2)  note SH3 domain-containing protein 2 (SH3P2); FUNCTIONS IN: clathrin binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Src homology-3 domain (InterPro:IPR001452); BEST Arabidopsis thaliana protein match is: clathrin binding (TAIR:AT4G18060.1); Has 1201 Blast hits to 1169 proteins in 144 species: Archae - 0; Bacteria - 12; Metazoa - 956; Fungi - 47; Plants - 87; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).  protein_id AT4G34660.1p  transcript_id AT4G34660.1  protein_id AT4G34660.1p  transcript_id AT4G34660.1  
At4g34670	chr4:016548724	0.0	W/16548724-16548734,16548860-16548907,16548998-16549103,16549341-16549478,16549549-16549734,16549827-16550027,16550124-16550222	AT4G34670.1  CDS  gene_syn T4L20.250, T4L20_250  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S3A (RPS3aB)  note 40S ribosomal protein S3A (RPS3aB); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S3Ae, conserved site (InterPro:IPR018281), Ribosomal protein S3Ae (InterPro:IPR001593); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S3A (RPS3aA) (TAIR:AT3G04840.1); Has 941 Blast hits to 936 proteins in 297 species: Archae - 150; Bacteria - 1; Metazoa - 370; Fungi - 111; Plants - 126; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink).  protein_id AT4G34670.1p  transcript_id AT4G34670.1  protein_id AT4G34670.1p  transcript_id AT4G34670.1  
At4g34680	chr4:016553700	0.0	W/16553700-16553981,16554083-16554610	AT4G34680.1  CDS  gene_syn T4L20.260, T4L20_260  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleolus|GO:0005730|15610358|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  product GATA transcription factor 3, putative (GATA-3)  note GATA transcription factor 3, putative (GATA-3); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: zinc finger (GATA type) family protein (TAIR:AT3G60530.1); Has 846 Blast hits to 825 proteins in 96 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 352; Plants - 439; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT4G34680.1p  transcript_id AT4G34680.1  protein_id AT4G34680.1p  transcript_id AT4G34680.1  
At4g34680	chr4:016553700	0.0	W/16553700-16553981,16554083-16554610	AT4G34680.2  CDS  gene_syn T4L20.260, T4L20_260  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleolus|GO:0005730|15610358|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  product GATA transcription factor 3, putative (GATA-3)  note GATA transcription factor 3, putative (GATA-3); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: zinc finger (GATA type) family protein (TAIR:AT3G60530.1); Has 846 Blast hits to 825 proteins in 96 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 352; Plants - 439; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT4G34680.2p  transcript_id AT4G34680.2  protein_id AT4G34680.2p  transcript_id AT4G34680.2  
At4g34690	chr4:016556089	0.0	C/16556089-16556097,16555463-16556077	AT4G34690.1  CDS  gene_syn T4L20.270, T4L20_270  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G34690.1p  transcript_id AT4G34690.1  protein_id AT4G34690.1p  transcript_id AT4G34690.1  
At4g34695	chr4:016556623	0.0	W/16556623-16556695	AT4G34695.1  tRNA  gene_syn 67201.TRNA-GLU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Glu (anticodon: CTC)  transcript_id AT4G34695.1  
At4g34700	chr4:016556874	0.0	W/16556874-16557005,16557109-16557150,16557941-16558022,16558168-16558223,16558321-16558362	AT4G34700.1  CDS  gene_syn T4L20.280, T4L20_280  go_component plasma membrane|GO:0005886|17151019|IDA  go_component mitochondrial membrane|GO:0031966|16407270|IDA  go_component respiratory chain complex I|GO:0045271|16407270|IDA  go_process photorespiration|GO:0009853|16407270|TAS  go_function catalytic activity|GO:0003824||ISS  product complex 1 family protein / LVR family protein  note complex 1 family protein / LVR family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: photorespiration; LOCATED IN: mitochondrial membrane, plasma membrane, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 169 Blast hits to 169 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 85; Fungi - 51; Plants - 24; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT4G34700.1p  transcript_id AT4G34700.1  protein_id AT4G34700.1p  transcript_id AT4G34700.1  
At4g34710	chr4:016560315	0.0	C/16560315-16562450	AT4G34710.1  CDS  gene_syn ADC2, ARGININE DECARBOXYLASE, ARGININE DECARBOXYLASE 2, ATADC2, SPE2, T4L20.290, T4L20_290  gene ADC2  function encodes a arginine decarboxylase (ADC), a rate-limiting enzyme that catalyzes the first step of polyamine (PA) biosynthesis via ADC pathway in Arabidopsis thaliana. Arabidopsis genome has two ADC paralogs, ADC1 and ADC2. ADC2 is stress-inducible (osmotic stress). Double mutant analysis showed that ADC genes are essential for the production of PA, and are required for normal seed development. Overexpression causes phenotypes similar to GA-deficient plants and these plants show reduced levels of GA due to lower expression levels of AtGA20ox1, AtGA3ox3 and AtGA3ox1.  go_component cellular_component|GO:0005575||ND  go_process polyamine biosynthetic process|GO:0006596|10481069|IMP  go_process response to osmotic stress|GO:0006970|10481069|IMP  go_process response to oxidative stress|GO:0006979|15634198|IEP  go_process response to cold|GO:0009409|18701673|IMP  go_process putrescine biosynthetic process|GO:0009446|15733873|IMP  go_process response to wounding|GO:0009611|12428010|IEP  go_process response to salt stress|GO:0009651|11351099|IEP  go_process response to salt stress|GO:0009651|15086823|IMP  go_process response to abscisic acid stimulus|GO:0009737|12428010|IEP  go_process response to jasmonic acid stimulus|GO:0009753|12428010|IEP  go_process embryonic development ending in seed dormancy|GO:0009793|15733873|IDA  go_process seed development|GO:0048316|15733873|IGI  go_function arginine decarboxylase activity|GO:0008792|10481069|IMP  product ADC2 (ARGININE DECARBOXYLASE 2); arginine decarboxylase  note ARGININE DECARBOXYLASE 2 (ADC2); FUNCTIONS IN: arginine decarboxylase activity; INVOLVED IN: in 11 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Orn/DAP/Arg decarboxylase 2 (InterPro:IPR000183), Arginine decarboxylase (InterPro:IPR002985); BEST Arabidopsis thaliana protein match is: ADC1 (ARGININE DECARBOXYLASE 1); arginine decarboxylase (TAIR:AT2G16500.1); Has 5102 Blast hits to 5054 proteins in 1194 species: Archae - 76; Bacteria - 2929; Metazoa - 84; Fungi - 23; Plants - 298; Viruses - 2; Other Eukaryotes - 1690 (source: NCBI BLink).  protein_id AT4G34710.1p  transcript_id AT4G34710.1  protein_id AT4G34710.1p  transcript_id AT4G34710.1  
At4g34710	chr4:016560315	0.0	C/16560315-16562450	AT4G34710.2  CDS  gene_syn ADC2, ARGININE DECARBOXYLASE, ARGININE DECARBOXYLASE 2, ATADC2, SPE2, T4L20.290, T4L20_290  gene ADC2  function encodes a arginine decarboxylase (ADC), a rate-limiting enzyme that catalyzes the first step of polyamine (PA) biosynthesis via ADC pathway in Arabidopsis thaliana. Arabidopsis genome has two ADC paralogs, ADC1 and ADC2. ADC2 is stress-inducible (osmotic stress). Double mutant analysis showed that ADC genes are essential for the production of PA, and are required for normal seed development. Overexpression causes phenotypes similar to GA-deficient plants and these plants show reduced levels of GA due to lower expression levels of AtGA20ox1, AtGA3ox3 and AtGA3ox1.  go_component cellular_component|GO:0005575||ND  go_process polyamine biosynthetic process|GO:0006596|10481069|IMP  go_process response to osmotic stress|GO:0006970|10481069|IMP  go_process response to oxidative stress|GO:0006979|15634198|IEP  go_process response to cold|GO:0009409|18701673|IMP  go_process putrescine biosynthetic process|GO:0009446|15733873|IMP  go_process response to wounding|GO:0009611|12428010|IEP  go_process response to salt stress|GO:0009651|11351099|IEP  go_process response to salt stress|GO:0009651|15086823|IMP  go_process response to abscisic acid stimulus|GO:0009737|12428010|IEP  go_process response to jasmonic acid stimulus|GO:0009753|12428010|IEP  go_process embryonic development ending in seed dormancy|GO:0009793|15733873|IDA  go_process seed development|GO:0048316|15733873|IGI  go_function arginine decarboxylase activity|GO:0008792|10481069|IMP  product ADC2 (ARGININE DECARBOXYLASE 2); arginine decarboxylase  note ARGININE DECARBOXYLASE 2 (ADC2); FUNCTIONS IN: arginine decarboxylase activity; INVOLVED IN: in 11 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Orn/DAP/Arg decarboxylase 2 (InterPro:IPR000183), Arginine decarboxylase (InterPro:IPR002985); BEST Arabidopsis thaliana protein match is: ADC1 (ARGININE DECARBOXYLASE 1); arginine decarboxylase (TAIR:AT2G16500.1); Has 5102 Blast hits to 5054 proteins in 1194 species: Archae - 76; Bacteria - 2929; Metazoa - 84; Fungi - 23; Plants - 298; Viruses - 2; Other Eukaryotes - 1690 (source: NCBI BLink).  protein_id AT4G34710.2p  transcript_id AT4G34710.2  protein_id AT4G34710.2p  transcript_id AT4G34710.2  
At4g34720	chr4:016569090	0.0	C/16569090-16569165,16568453-16568738,16568223-16568355	AT4G34720.1  CDS  gene_syn ATVHA-C1, AVA-P1, T4L20.300, VACUOLAR H+-PUMPING ATPASE 16 KDA PROTEOLIPID, VACUOLAR H+-PUMPING ATPASE C1, VHA-C1  gene AVA-P1  function vacuolar H+-pumping ATPase 16 kDa proteolipid (ava-p1)  go_component vacuole|GO:0005773|15215502|IDA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_process proton transport|GO:0015992||ISS  go_function ATPase activity|GO:0016887||ISS  go_function proton-transporting ATPase activity, rotational mechanism|GO:0046961||ISS  product AVA-P1; ATPase/ proton-transporting ATPase, rotational mechanism  note AVA-P1; FUNCTIONS IN: ATPase activity, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: proton transport, ATP synthesis coupled proton transport; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F0/V0 complex, subunit C (InterPro:IPR002379), ATPase, V0 complex, proteolipid subunit C, eukaryotic (InterPro:IPR011555), ATPase, V0 complex, proteolipid subunit C (InterPro:IPR000245); BEST Arabidopsis thaliana protein match is: ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3); ATPase (TAIR:AT4G38920.1); Has 1818 Blast hits to 1637 proteins in 400 species: Archae - 127; Bacteria - 312; Metazoa - 519; Fungi - 315; Plants - 225; Viruses - 0; Other Eukaryotes - 320 (source: NCBI BLink).  protein_id AT4G34720.1p  transcript_id AT4G34720.1  protein_id AT4G34720.1p  transcript_id AT4G34720.1  
At4g34730	chr4:016570936	0.0	C/16570936-16571274,16570448-16570621,16570019-16570153	AT4G34730.1  CDS  gene_syn T4L20.310, T4L20_310  go_component chloroplast|GO:0009507|18431481|IDA  go_process rRNA processing|GO:0006364||IEA  go_process rRNA processing|GO:0006364||ISS  go_function RNA binding|GO:0003723||ISS  product ribosome-binding factor A family protein  note ribosome-binding factor A family protein; FUNCTIONS IN: RNA binding; INVOLVED IN: rRNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K homology-like, alpha/beta (InterPro:IPR015946), Ribosome-binding factor A (InterPro:IPR000238); Has 2908 Blast hits to 2907 proteins in 1057 species: Archae - 0; Bacteria - 2230; Metazoa - 5; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 649 (source: NCBI BLink).  protein_id AT4G34730.1p  transcript_id AT4G34730.1  protein_id AT4G34730.1p  transcript_id AT4G34730.1  
At4g34740	chr4:016574894	0.0	C/16574894-16576579	AT4G34740.1  CDS  gene_syn ATASE2, ATPURF2, CHLOROPLAST IMPORT APPARATUS 1, CIA1, F11I11.4, GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 2  gene ATASE2  function Encodes glutamine 5-phosphoribosylpyrophosphate amidotransferase. Mutants are deficient in leaf, but not cotyledon, plastid and palisade cell development. Mutants exhibit defective chloroplast development under non-low light, suggesting that the defect in chloroplast development is caused by photo-oxidative damage.  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastid stroma|GO:0009532|15266056|IDA  go_process purine nucleotide biosynthetic process|GO:0006164|14977588|IMP  go_process purine nucleotide biosynthetic process|GO:0006164||TAS  go_process purine base biosynthetic process|GO:0009113||ISS  go_process leaf morphogenesis|GO:0009965||IMP  go_function amidophosphoribosyltransferase activity|GO:0004044|14977588|IMP  go_function amidophosphoribosyltransferase activity|GO:0004044||ISS  go_function amidophosphoribosyltransferase activity|GO:0004044||TAS  product ATASE2 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 2); amidophosphoribosyltransferase  note GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 2 (ATASE2); FUNCTIONS IN: amidophosphoribosyltransferase activity; INVOLVED IN: purine nucleotide biosynthetic process, purine base biosynthetic process, leaf morphogenesis; LOCATED IN: plastid stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase, class-II (InterPro:IPR000583), Phosphoribosyltransferase (InterPro:IPR000836), Amidophosphoribosyl transferase (InterPro:IPR005854), Glutamine amidotransferase, type II (InterPro:IPR017932); BEST Arabidopsis thaliana protein match is: ATASE1 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 1); amidophosphoribosyltransferase (TAIR:AT2G16570.1); Has 15093 Blast hits to 15089 proteins in 1649 species: Archae - 371; Bacteria - 6532; Metazoa - 378; Fungi - 218; Plants - 136; Viruses - 15; Other Eukaryotes - 7443 (source: NCBI BLink).  protein_id AT4G34740.1p  transcript_id AT4G34740.1  protein_id AT4G34740.1p  transcript_id AT4G34740.1  
At4g34750	chr4:016577566	0.0	W/16577566-16578018	AT4G34750.1  CDS  gene_syn F11I11.5  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  product auxin-responsive protein, putative / small auxin up RNA (SAUR_E)  note auxin-responsive protein, putative / small auxin up RNA (SAUR_E); FUNCTIONS IN: calmodulin binding; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT1G19840.1); Has 679 Blast hits to 668 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 678; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G34750.1p  transcript_id AT4G34750.1  protein_id AT4G34750.1p  transcript_id AT4G34750.1  
At4g34760	chr4:016582471	0.0	C/16582471-16582794	AT4G34760.1  CDS  gene_syn F11I11.11  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT2G16580.1); Has 759 Blast hits to 747 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 758; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G34760.1p  transcript_id AT4G34760.1  protein_id AT4G34760.1p  transcript_id AT4G34760.1  
At4g34770	chr4:016591352	0.0	W/16591352-16591666	AT4G34770.1  CDS  gene_syn F11I11.10, F11I11_10  go_process response to auxin stimulus|GO:0009733||ISS  product auxin-responsive family protein  note auxin-responsive family protein; INVOLVED IN: response to auxin stimulus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT2G21210.1); Has 705 Blast hits to 695 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 704; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G34770.1p  transcript_id AT4G34770.1  protein_id AT4G34770.1p  transcript_id AT4G34770.1  
At4g34780	chr4:016592397	0.0	C/16592397-16592717	AT4G34780.1  CDS  gene_syn F11I11.20, F11I11_20  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT2G21210.1); Has 591 Blast hits to 584 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 590; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G34780.1p  transcript_id AT4G34780.1  protein_id AT4G34780.1p  transcript_id AT4G34780.1  
At4g34790	chr4:016594539	0.0	W/16594539-16594865	AT4G34790.1  CDS  gene_syn F11I11.30, F11I11_30  go_component chloroplast|GO:0009507||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus, N-terminal protein myristoylation; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT4G34810.1); Has 690 Blast hits to 679 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 689; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G34790.1p  transcript_id AT4G34790.1  protein_id AT4G34790.1p  transcript_id AT4G34790.1  
At4g34800	chr4:016596860	0.0	W/16596860-16597144	AT4G34800.1  CDS  gene_syn F11I11.40, F11I11_40  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT4G34810.1); Has 621 Blast hits to 616 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 620; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G34800.1p  transcript_id AT4G34800.1  protein_id AT4G34800.1p  transcript_id AT4G34800.1  
At4g34810	chr4:016599104	0.0	W/16599104-16599421	AT4G34810.1  CDS  gene_syn F11I11.50, F11I11_50  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT4G34790.1); Has 677 Blast hits to 666 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 676; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G34810.1p  transcript_id AT4G34810.1  protein_id AT4G34810.1p  transcript_id AT4G34810.1  
At4g34830	chr4:016605668	0.0	C/16605668-16605994,16604841-16605531,16604497-16604722,16604292-16604355,16604050-16604194,16603852-16603967,16603455-16603583,16603112-16603285,16602871-16603035,16602595-16602735,16602225-16602324,16601957-16602065,16601778-16601869,16601548-16601638,16601089-16601320,16600912-16601004,16600555-16600603,16600321-16600414,16599976-16600207	AT4G34830.1  CDS  gene_syn F11I11.70, F11I11_70  go_component chloroplast|GO:0009507|18431481|IDA  product unknown protein  note LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: EMB2745 (EMBRYO DEFECTIVE 2745) (TAIR:AT5G39710.1); Has 19818 Blast hits to 5849 proteins in 171 species: Archae - 3; Bacteria - 16; Metazoa - 570; Fungi - 397; Plants - 17732; Viruses - 0; Other Eukaryotes - 1100 (source: NCBI BLink).  protein_id AT4G34830.1p  transcript_id AT4G34830.1  protein_id AT4G34830.1p  transcript_id AT4G34830.1  
At4g34840	chr4:016606299	0.0	W/16606299-16606359,16606433-16606496,16606564-16606655,16606744-16606850,16606950-16607024,16607156-16607230,16607348-16607440,16607551-16607748	AT4G34840.1  CDS  gene_syn ATMTN2, F11I11.80, F11I11_80  gene ATMTN2  go_process nucleoside metabolic process|GO:0009116||IEA  go_component cellular_component|GO:0005575||ND  go_function methylthioadenosine nucleosidase activity|GO:0008930|17144895|NAS  product ATMTN2; methylthioadenosine nucleosidase  note ATMTN2; FUNCTIONS IN: methylthioadenosine nucleosidase activity; INVOLVED IN: nucleoside metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside phosphorylase (InterPro:IPR000845), Nucleoside phosphorylase, family 1 (InterPro:IPR018017); BEST Arabidopsis thaliana protein match is: ATMTN1; catalytic/ methylthioadenosine nucleosidase (TAIR:AT4G38800.1); Has 1301 Blast hits to 1301 proteins in 595 species: Archae - 0; Bacteria - 1215; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT4G34840.1p  transcript_id AT4G34840.1  protein_id AT4G34840.1p  transcript_id AT4G34840.1  
At4g34850	chr4:016608349	0.0	W/16608349-16608532,16608637-16609203,16609293-16609720	AT4G34850.1  CDS  gene_syn F11I11.90, F11I11_90  go_function catalytic activity|GO:0003824||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process phenylpropanoid biosynthetic process|GO:0009699||ISS  go_process pollen exine formation|GO:0010584||IMP  product chalcone and stilbene synthase family protein  note chalcone and stilbene synthase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: phenylpropanoid biosynthetic process, pollen exine formation; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, sepal, flower, anther, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Chalcone/stilbene synthase, N-terminal (InterPro:IPR001099), Thiolase-like (InterPro:IPR016039), Polyketide synthase, type III (InterPro:IPR011141), Thiolase-like, subgroup (InterPro:IPR016038), Chalcone and stilbene synthases, C-terminal (InterPro:IPR012328); BEST Arabidopsis thaliana protein match is: chalcone and stilbene synthase family protein (TAIR:AT1G02050.1); Has 4801 Blast hits to 4795 proteins in 1106 species: Archae - 0; Bacteria - 1590; Metazoa - 0; Fungi - 48; Plants - 2910; Viruses - 0; Other Eukaryotes - 253 (source: NCBI BLink).  protein_id AT4G34850.1p  transcript_id AT4G34850.1  protein_id AT4G34850.1p  transcript_id AT4G34850.1  
At4g34860	chr4:016611591	0.0	C/16611591-16612019,16611069-16611500,16610395-16610953,16609955-16610250	AT4G34860.1  CDS  gene_syn F11I11.100, F11I11_100  go_process sucrose catabolic process, using beta-fructofuranosidase|GO:0019575||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_function beta-fructofuranosidase activity|GO:0004564||ISS  product beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative  note beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative; FUNCTIONS IN: catalytic activity, beta-fructofuranosidase activity; INVOLVED IN: sucrose catabolic process, using beta-fructofuranosidase; LOCATED IN: cytosol; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Plant neutral invertase (InterPro:IPR006937), Six-hairpin glycosidase-like (InterPro:IPR008928); BEST Arabidopsis thaliana protein match is: beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative (TAIR:AT4G09510.1); Has 530 Blast hits to 529 proteins in 80 species: Archae - 0; Bacteria - 110; Metazoa - 0; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).  protein_id AT4G34860.1p  transcript_id AT4G34860.1  protein_id AT4G34860.1p  transcript_id AT4G34860.1  
At4g34860	chr4:016611591	0.0	C/16611591-16612019,16611069-16611500,16610395-16610953,16609955-16610250	AT4G34860.2  CDS  gene_syn F11I11.100, F11I11_100  go_function catalytic activity|GO:0003824||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_function beta-fructofuranosidase activity|GO:0004564||ISS  product beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative  note beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative; FUNCTIONS IN: catalytic activity, beta-fructofuranosidase activity; LOCATED IN: cytosol; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Plant neutral invertase (InterPro:IPR006937), Six-hairpin glycosidase-like (InterPro:IPR008928); BEST Arabidopsis thaliana protein match is: beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative (TAIR:AT4G09510.1); Has 530 Blast hits to 529 proteins in 80 species: Archae - 0; Bacteria - 110; Metazoa - 0; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).  protein_id AT4G34860.2p  transcript_id AT4G34860.2  protein_id AT4G34860.2p  transcript_id AT4G34860.2  
At4g34870	chr4:016614451	0.0	W/16614451-16614969	AT4G34870.1  CDS  gene_syn ARABIDOPSIS THALIANA CYCLOPHILIN 1, ATCYP1, CYCLOPHILIN, ROC5, ROTAMASE CYCLOPHILIN 5, ROTAMASE CYP  gene ROC5  function belongs to cyclophilin family  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_component cytosol|GO:0005829|9426607|ISS  go_process protein folding|GO:0006457||ISS  go_process signal transduction|GO:0007165|9426607|ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755|9426607|ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product ROC5 (ROTAMASE CYCLOPHILIN 5); peptidyl-prolyl cis-trans isomerase  note ROTAMASE CYCLOPHILIN 5 (ROC5); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, signal transduction; LOCATED IN: cytosol, apoplast, chloroplast, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: ROC3; peptidyl-prolyl cis-trans isomerase (TAIR:AT2G16600.1); Has 11711 Blast hits to 11691 proteins in 1525 species: Archae - 82; Bacteria - 3728; Metazoa - 2421; Fungi - 956; Plants - 738; Viruses - 4; Other Eukaryotes - 3782 (source: NCBI BLink).  protein_id AT4G34870.1p  transcript_id AT4G34870.1  protein_id AT4G34870.1p  transcript_id AT4G34870.1  
At4g34880	chr4:016615549	0.0	W/16615549-16616089,16616311-16616404,16616498-16616707,16616786-16616984,16617068-16617424	AT4G34880.1  CDS  gene_syn F11I11.120, F11I11_120  go_component endomembrane system|GO:0012505||IEA  go_process acrylonitrile catabolic process|GO:0019256||IEA  go_process aldoxime metabolic process|GO:0019330||IEA  go_function carbon-nitrogen ligase activity, with glutamine as amido-N-donor|GO:0016884||IEA  go_function amidase activity|GO:0004040||ISS  product amidase family protein  note amidase family protein; FUNCTIONS IN: amidase activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor; INVOLVED IN: acrylonitrile catabolic process, aldoxime metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Amidase signature enzyme (InterPro:IPR000120); BEST Arabidopsis thaliana protein match is: amidase family protein (TAIR:AT5G07360.2); Has 10946 Blast hits to 10880 proteins in 1379 species: Archae - 132; Bacteria - 5130; Metazoa - 366; Fungi - 337; Plants - 155; Viruses - 0; Other Eukaryotes - 4826 (source: NCBI BLink).  protein_id AT4G34880.1p  transcript_id AT4G34880.1  protein_id AT4G34880.1p  transcript_id AT4G34880.1  
At4g34881	chr4:016617892	0.0	W/16617892-16618071	AT4G34881.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G34881.1p  transcript_id AT4G34881.1  protein_id AT4G34881.1p  transcript_id AT4G34881.1  
At4g34890	chr4:016624857	0.0	C/16624857-16624983,16624389-16624488,16624183-16624291,16622607-16624100,16621998-16622240,16621413-16621727,16620982-16621221,16620555-16620839,16620222-16620443,16619877-16620038,16619644-16619778,16619315-16619551,16619062-16619235,16618736-16618978	AT4G34890.1  CDS  gene_syn ATXDH1, F11I11.130, F11I11_130, XANTHINE DEHYDROGENASE 1, XDH1  gene XDH1  function Encodes a xanthine dehydrogenase, involved in purine catabolism. Ubiquitously expressed, but the transcript level is altered during aging, senescence, salt and cold stress, ABA treatment, and dark treatment. RNAi lines that suppress both XDH1 and XDH2 produce small plants with reduced fertility and accelerated leaf senescence.  go_component cellular_component|GO:0005575||ND  go_process purine base catabolic process|GO:0006145|14726515|TAS  go_process purine base catabolic process|GO:0006145|18266920|IMP  go_process response to stress|GO:0006950|14726515|TAS  go_process superoxide release|GO:0042554|15941399|IMP  go_process xanthine metabolic process|GO:0046110|17872919|IMP  go_function xanthine dehydrogenase activity|GO:0004854|14726515|IDA  go_function xanthine dehydrogenase activity|GO:0004854||ISS  product XDH1 (XANTHINE DEHYDROGENASE 1); xanthine dehydrogenase  note XANTHINE DEHYDROGENASE 1 (XDH1); FUNCTIONS IN: xanthine dehydrogenase activity; INVOLVED IN: purine base catabolic process, xanthine metabolic process, superoxide release, response to stress; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Aldehyde oxidase/xanthine dehydrogenase (InterPro:IPR016208), Ferredoxin (InterPro:IPR001041), Molybdopterin dehydrogenase, FAD-binding (InterPro:IPR002346), [2Fe-2S]-binding (InterPro:IPR002888), FAD-binding, type 2, subdomain 1 (InterPro:IPR016167), FAD-binding, type 2 (InterPro:IPR016166), CO dehydrogenase flavoprotein, C-terminal (InterPro:IPR005107), 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 (InterPro:IPR016169), Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead (InterPro:IPR000674), Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding (InterPro:IPR008274); BEST Arabidopsis thaliana protein match is: XDH2 (XXANTHINE DEHYDROGENASE 2); FAD binding / catalytic/ electron carrier/ iron ion binding / iron-sulfur cluster binding / metal ion binding / oxidoreductase/ xanthine dehydrogenase (TAIR:AT4G34900.1); Has 15936 Blast hits to 15371 proteins in 811 species: Archae - 184; Bacteria - 7678; Metazoa - 1007; Fungi - 60; Plants - 138; Viruses - 0; Other Eukaryotes - 6869 (source: NCBI BLink).  protein_id AT4G34890.1p  transcript_id AT4G34890.1  protein_id AT4G34890.1p  transcript_id AT4G34890.1  
At4g34900	chr4:016631204	0.0	C/16631204-16631306,16630948-16631047,16630751-16630859,16629187-16630680,16628872-16629114,16628390-16628704,16628016-16628255,16627562-16627846,16627236-16627457,16626904-16627065,16626615-16626749,16626294-16626530,16626004-16626177,16625688-16625930	AT4G34900.1  CDS  gene_syn A. THALIANA XANTHINE DEHYDROGENASE 2, ATXDH2, F11I11.140, F11I11_140, XDH2, XXANTHINE DEHYDROGENASE 2  gene XDH2  go_process allantoin biosynthetic process|GO:0019428||IEA  go_function catalytic activity|GO:0003824||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function metal ion binding|GO:0046872||IEA  go_function FAD binding|GO:0050660||IEA  go_function iron-sulfur cluster binding|GO:0051536||IEA  go_component cellular_component|GO:0005575||ND  go_function xanthine dehydrogenase activity|GO:0004854||ISS  product XDH2 (XXANTHINE DEHYDROGENASE 2); FAD binding / catalytic/ electron carrier/ iron ion binding / iron-sulfur cluster binding / metal ion binding / oxidoreductase/ xanthine dehydrogenase  note XXANTHINE DEHYDROGENASE 2 (XDH2); FUNCTIONS IN: in 8 functions; INVOLVED IN: allantoin biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Aldehyde oxidase/xanthine dehydrogenase (InterPro:IPR016208), Ferredoxin (InterPro:IPR001041), Molybdopterin dehydrogenase, FAD-binding (InterPro:IPR002346), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), [2Fe-2S]-binding (InterPro:IPR002888), FAD-binding, type 2, subdomain 1 (InterPro:IPR016167), FAD-binding, type 2 (InterPro:IPR016166), CO dehydrogenase flavoprotein, C-terminal (InterPro:IPR005107), 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 (InterPro:IPR016169), Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead (InterPro:IPR000674), Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding (InterPro:IPR008274); BEST Arabidopsis thaliana protein match is: XDH1 (XANTHINE DEHYDROGENASE 1); xanthine dehydrogenase (TAIR:AT4G34890.1); Has 15600 Blast hits to 15136 proteins in 810 species: Archae - 184; Bacteria - 7544; Metazoa - 1009; Fungi - 62; Plants - 139; Viruses - 0; Other Eukaryotes - 6662 (source: NCBI BLink).  protein_id AT4G34900.1p  transcript_id AT4G34900.1  protein_id AT4G34900.1p  transcript_id AT4G34900.1  
At4g34910	chr4:016631661	0.0	W/16631661-16631903,16632002-16632163,16632253-16632342,16632417-16632545,16632746-16632846,16632947-16633058,16633142-16633273,16633366-16633431,16633520-16633705,16633841-16633936,16634021-16634158,16634234-16634316,16634398-16634665,16634760-16634834	AT4G34910.1  CDS  gene_syn F11I11.150, F11I11_150  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_component cellular_component|GO:0005575||ND  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD/DEAH box helicase, putative (RH16)  note DEAD/DEAH box helicase, putative (RH16); FUNCTIONS IN: helicase activity, ATP binding, nucleic acid binding, ATP-dependent helicase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (RH10) (TAIR:AT5G60990.1); Has 23736 Blast hits to 23298 proteins in 1666 species: Archae - 321; Bacteria - 8811; Metazoa - 4714; Fungi - 2993; Plants - 1279; Viruses - 4; Other Eukaryotes - 5614 (source: NCBI BLink).  protein_id AT4G34910.1p  transcript_id AT4G34910.1  protein_id AT4G34910.1p  transcript_id AT4G34910.1  
At4g34920	chr4:016635745	0.0	W/16635745-16636701	AT4G34920.1  CDS  gene_syn F11I11.160, F11I11_160  go_process lipid metabolic process|GO:0006629||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_process phospholipid biosynthetic process|GO:0008654||IEA  go_process triglyceride biosynthetic process|GO:0019432||IEA  go_function phospholipase C activity|GO:0004629||IEA  go_function phosphoric diester hydrolase activity|GO:0008081||IEA  go_component cellular_component|GO:0005575||ND  product 1-phosphatidylinositol phosphodiesterase-related  note 1-phosphatidylinositol phosphodiesterase-related; FUNCTIONS IN: phospholipase C activity, phosphoric diester hydrolase activity; INVOLVED IN: triglyceride biosynthetic process, intracellular signaling cascade, lipid metabolic process, phospholipid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific , X region (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946); BEST Arabidopsis thaliana protein match is: 1-phosphatidylinositol phosphodiesterase-related (TAIR:AT4G34930.1); Has 455 Blast hits to 453 proteins in 102 species: Archae - 0; Bacteria - 275; Metazoa - 88; Fungi - 40; Plants - 31; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT4G34920.1p  transcript_id AT4G34920.1  protein_id AT4G34920.1p  transcript_id AT4G34920.1  
At4g34930	chr4:016637551	0.0	W/16637551-16638726	AT4G34930.1  CDS  gene_syn F11I11.170, F11I11_170  go_process lipid metabolic process|GO:0006629||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_function phospholipase C activity|GO:0004629||IEA  go_function phosphoric diester hydrolase activity|GO:0008081||IEA  product 1-phosphatidylinositol phosphodiesterase-related  note 1-phosphatidylinositol phosphodiesterase-related; FUNCTIONS IN: phospholipase C activity, phosphoric diester hydrolase activity; INVOLVED IN: intracellular signaling cascade, lipid metabolic process; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific , X region (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946); BEST Arabidopsis thaliana protein match is: 1-phosphatidylinositol phosphodiesterase-related (TAIR:AT4G34920.1); Has 484 Blast hits to 482 proteins in 123 species: Archae - 0; Bacteria - 340; Metazoa - 53; Fungi - 39; Plants - 33; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT4G34930.1p  transcript_id AT4G34930.1  protein_id AT4G34930.1p  transcript_id AT4G34930.1  
At4g34940	chr4:016639760	0.0	W/16639760-16641754	AT4G34940.1  CDS  gene_syn ARMADILLO REPEAT ONLY 1, ARO1, F11I11.180, F11I11_180  gene ARO1  function Armadillo repeat protein. One of a family of four in Arabidopsis. Located in the nucleus and cytoplasm of pollen vegetative cells, and in the cytoplasm of egg cells. Involved in the signaling network controlling tip growth and actin organization in the pollen tube.  go_function binding|GO:0005488||IEA  go_component nucleus|GO:0005634|18931021|IDA  go_component cytoplasm|GO:0005737|18931021|IDA  go_process pollen tube growth|GO:0009860|18931021|IMP  go_process actin cytoskeleton organization|GO:0030036|18931021|IMP  product ARO1 (ARMADILLO REPEAT ONLY 1); binding  note ARMADILLO REPEAT ONLY 1 (ARO1); FUNCTIONS IN: binding; INVOLVED IN: pollen tube growth, actin cytoskeleton organization; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARO2 (ARMADILLO REPEAT ONLY 2); binding (TAIR:AT5G66200.1); Has 455 Blast hits to 433 proteins in 97 species: Archae - 0; Bacteria - 2; Metazoa - 148; Fungi - 60; Plants - 161; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT4G34940.1p  transcript_id AT4G34940.1  protein_id AT4G34940.1p  transcript_id AT4G34940.1  
At4g34950	chr4:016644421	0.0	C/16644421-16644759,16643449-16644341,16642544-16643015	AT4G34950.1  CDS  gene_syn F11I11.190, F11I11_190  product nodulin family protein  note nodulin family protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nodulin family protein (TAIR:AT2G16660.1); Has 2125 Blast hits to 2060 proteins in 475 species: Archae - 11; Bacteria - 788; Metazoa - 4; Fungi - 198; Plants - 318; Viruses - 0; Other Eukaryotes - 806 (source: NCBI BLink).  protein_id AT4G34950.1p  transcript_id AT4G34950.1  protein_id AT4G34950.1p  transcript_id AT4G34950.1  
At4g34960	chr4:016648865	0.0	W/16648865-16648963,16649438-16649519,16649668-16649715,16649805-16650011,16650141-16650216,16650484-16650646	AT4G34960.1  CDS  gene_syn M4E13.20, M4E13_20  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||IEA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process protein folding|GO:0006457||ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative  note peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: CYP5 (CYCLOPHILIN 5); peptidyl-prolyl cis-trans isomerase (TAIR:AT2G29960.1); Has 11230 Blast hits to 11218 proteins in 1505 species: Archae - 82; Bacteria - 3582; Metazoa - 2365; Fungi - 952; Plants - 729; Viruses - 4; Other Eukaryotes - 3516 (source: NCBI BLink).  protein_id AT4G34960.1p  transcript_id AT4G34960.1  protein_id AT4G34960.1p  transcript_id AT4G34960.1  
At4g34970	chr4:016653784	0.0	W/16653784-16653798,16653883-16654142,16654443-16654593	AT4G34970.1  CDS  gene_syn ACTIN DEPOLYMERIZING FACTOR 9, ADF9, M4E13.30, M4E13_30  gene ADF9  go_component intracellular|GO:0005622||IEA  go_function actin binding|GO:0003779||IEA  go_component intracellular|GO:0005622||ISS  go_process biological_process|GO:0008150||ND  product ADF9 (ACTIN DEPOLYMERIZING FACTOR 9); actin binding  note ACTIN DEPOLYMERIZING FACTOR 9 (ADF9); FUNCTIONS IN: actin binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Actin-binding, cofilin/tropomyosin type (InterPro:IPR002108); BEST Arabidopsis thaliana protein match is: ADF5 (ACTIN DEPOLYMERIZING FACTOR 5); actin binding (TAIR:AT2G16700.1); Has 971 Blast hits to 970 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 435; Fungi - 102; Plants - 307; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).  protein_id AT4G34970.1p  transcript_id AT4G34970.1  protein_id AT4G34970.1p  transcript_id AT4G34970.1  
At4g34975	chr4:016655286	0.0	W/16655286-16655359	AT4G34975.1  tRNA  gene_syn 67202.TRNA-THR-1, 67203.TRNA-THR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Thr (anticodon: AGT)  transcript_id AT4G34975.1  
At4g34980	chr4:016656929	0.0	C/16656929-16659223	AT4G34980.1  CDS  gene_syn M4E13.40, M4E13_40, SLP2  gene SLP2  function Serine protease similar to subtilisin.  go_component membrane|GO:0016020|17432890|IDA  go_component middle lamella-containing extracellular matrix|GO:0048196|12702015|ISS  go_process proteolysis|GO:0006508||ISS  go_process plant-type cell wall modification|GO:0009827|12702015|TAS  go_function serine-type peptidase activity|GO:0008236|12702015|ISS  product SLP2; serine-type peptidase  note SLP2; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: plant-type cell wall modification, proteolysis; LOCATED IN: middle lamella-containing extracellular matrix, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT3G14240.1); Has 5332 Blast hits to 4625 proteins in 820 species: Archae - 165; Bacteria - 3028; Metazoa - 127; Fungi - 463; Plants - 885; Viruses - 0; Other Eukaryotes - 664 (source: NCBI BLink).  protein_id AT4G34980.1p  transcript_id AT4G34980.1  protein_id AT4G34980.1p  transcript_id AT4G34980.1  
At4g34990	chr4:016662027	0.0	C/16662027-16662289,16661370-16661931	AT4G34990.1  CDS  gene_syn AtMYB32, M4E13.50, M4E13_50, myb domain protein 32  gene AtMYB32  function Member of the R2R3 factor gene family.  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AtMYB32 (myb domain protein 32); DNA binding / transcription factor  note myb domain protein 32 (AtMYB32); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 7 processes; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB7 (MYB DOMAIN PROTEIN 7); DNA binding / transcription factor (TAIR:AT2G16720.1); Has 6363 Blast hits to 5929 proteins in 355 species: Archae - 0; Bacteria - 0; Metazoa - 567; Fungi - 294; Plants - 3895; Viruses - 3; Other Eukaryotes - 1604 (source: NCBI BLink).  protein_id AT4G34990.1p  transcript_id AT4G34990.1  protein_id AT4G34990.1p  transcript_id AT4G34990.1  
At4g35000	chr4:016667429	0.0	C/16667429-16667541,16667153-16667277,16666939-16666988,16666327-16666392,16666190-16666238,16665994-16666076,16665831-16665910,16665584-16665686,16665007-16665201	AT4G35000.1  CDS  gene_syn APX3, ASCORBATE PEROXIDASE 3, M4E13.60, M4E13_60  gene APX3  function Encodes a microsomal ascorbate peroxidase APX3. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. The APX3 protein interacts with AKR2 (ankyrin-containing protein that interacts with AFT1) and AFT1, a 14-3-3 protein.  go_component mitochondrion|GO:0005739|15276431|IDA  go_component vacuole|GO:0005773|14760709|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component peroxisomal membrane|GO:0005778|9290648|ISS  go_process response to oxidative stress|GO:0006979|10501032|IMP  go_function L-ascorbate peroxidase activity|GO:0016688|9290648|ISS  go_function L-ascorbate peroxidase activity|GO:0016688||ISS  product APX3 (ASCORBATE PEROXIDASE 3); L-ascorbate peroxidase  note ASCORBATE PEROXIDASE 3 (APX3); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: response to oxidative stress; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: APX5 (ASCORBATE PEROXIDASE 5); L-ascorbate peroxidase/ heme binding / peroxidase (TAIR:AT4G35970.1); Has 7322 Blast hits to 6452 proteins in 871 species: Archae - 55; Bacteria - 2300; Metazoa - 2; Fungi - 620; Plants - 2400; Viruses - 0; Other Eukaryotes - 1945 (source: NCBI BLink).  protein_id AT4G35000.1p  transcript_id AT4G35000.1  protein_id AT4G35000.1p  transcript_id AT4G35000.1  
At4g35010	chr4:016671765	0.0	C/16671765-16671974,16671576-16671671,16671365-16671477,16671213-16671279,16671031-16671123,16670796-16670939,16670620-16670714,16670422-16670527,16670136-16670339,16669875-16670042,16669620-16669795,16669432-16669541,16669251-16669360,16669060-16669170,16668873-16668977,16668292-16668786,16668075-16668209	AT4G35010.1  CDS  gene_syn BETA-GALACTOSIDASE, BGAL11, M4E13.70, M4E13_70, beta-galactosidase 11  gene BGAL11  function putative beta-galactosidase (BGAL11 gene)  go_component beta-galactosidase complex|GO:0009341||IEA  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process lactose catabolic process|GO:0005990||IEA  go_process lactose catabolic process, using glucoside 3-dehydrogenase|GO:0019513||IEA  go_process lactose catabolic process via UDP-galactose|GO:0019515||IEA  go_function beta-galactosidase activity|GO:0004565|15517348|TAS  go_function beta-galactosidase activity|GO:0004565||ISS  product BGAL11 (beta-galactosidase 11); beta-galactosidase  note beta-galactosidase 11 (BGAL11); FUNCTIONS IN: beta-galactosidase activity; INVOLVED IN: lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process; LOCATED IN: endomembrane system, beta-galactosidase complex; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase family 2, carbohydrate-binding (InterPro:IPR006104), Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: BGAL13; beta-galactosidase (TAIR:AT2G16730.1); Has 1404 Blast hits to 1221 proteins in 271 species: Archae - 11; Bacteria - 446; Metazoa - 368; Fungi - 122; Plants - 383; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT4G35010.1p  transcript_id AT4G35010.1  protein_id AT4G35010.1p  transcript_id AT4G35010.1  
At4g35020	chr4:016673176	0.0	W/16673176-16673274,16673579-16673666,16673751-16673860,16673963-16674026,16674125-16674189,16674271-16674336,16674436-16674540	AT4G35020.1  CDS  gene_syn ARABIDOPSIS RAC-LIKE 3, ARAC3, ATROP6, M4E13.80, M4E13_80, RHO-RELATED PROTEIN FROM PLANTS 6, RHO1PS, ROP6  gene ARAC3  function A member of ROP GTPase gene family; Encodes a Rho-like GTP binding protein.  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_component nucleus|GO:0005634|15469496|IDA  go_component nucleolus|GO:0005730|15469496|IDA  go_component cytoplasm|GO:0005737|15469496|IDA  go_component spindle|GO:0005819|15469496|IDA  go_component plasma membrane|GO:0005886|10798620|IDA  go_component site of polarized growth|GO:0030427|11387211|IDA  go_function GTPase activity|GO:0003924|11387211|IDA  go_function GTP binding|GO:0005525||ISS  product ARAC3 (ARABIDOPSIS RAC-LIKE 3); GTP binding / GTPase  note ARABIDOPSIS RAC-LIKE 3 (ARAC3); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Ras small GTPase, Ras type (InterPro:IPR003577), Ras small GTPase, Rho type (InterPro:IPR003578); BEST Arabidopsis thaliana protein match is: ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5); GTP binding / GTPase (TAIR:AT1G75840.1); Has 19942 Blast hits to 19918 proteins in 574 species: Archae - 9; Bacteria - 58; Metazoa - 10890; Fungi - 2733; Plants - 1725; Viruses - 19; Other Eukaryotes - 4508 (source: NCBI BLink).  protein_id AT4G35020.1p  transcript_id AT4G35020.1  protein_id AT4G35020.1p  transcript_id AT4G35020.1  
At4g35025	chr4:016675528	0.0	C/16675528-16675749	AT4G35025.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G35025.1p  transcript_id AT4G35025.1  protein_id AT4G35025.1p  transcript_id AT4G35025.1  
At4g35030	chr4:016676234	0.0	W/16676234-16676552,16676620-16676871,16676955-16677118,16677198-16677428,16677511-16677684	AT4G35030.2  CDS  gene_syn M4E13.90, M4E13_90  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G16750.1); Has 80038 Blast hits to 79315 proteins in 2461 species: Archae - 41; Bacteria - 7265; Metazoa - 34643; Fungi - 6103; Plants - 18228; Viruses - 340; Other Eukaryotes - 13418 (source: NCBI BLink).  protein_id AT4G35030.2p  transcript_id AT4G35030.2  protein_id AT4G35030.2p  transcript_id AT4G35030.2  
At4g35030	chr4:016676234	0.0	W/16676234-16676552,16676620-16676871,16676955-16677123,16677198-16677423	AT4G35030.1  CDS  gene_syn M4E13.90, M4E13_90  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G16750.1); Has 31724 Blast hits to 31389 proteins in 972 species: Archae - 19; Bacteria - 1488; Metazoa - 11424; Fungi - 1309; Plants - 13141; Viruses - 120; Other Eukaryotes - 4223 (source: NCBI BLink).  protein_id AT4G35030.1p  transcript_id AT4G35030.1  protein_id AT4G35030.1p  transcript_id AT4G35030.1  
At4g35040	chr4:016680821	0.0	W/16680821-16681577,16681777-16681805	AT4G35040.1  CDS  gene_syn M4E13.100, M4E13_100  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  product bZIP transcription factor family protein  note bZIP transcription factor family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT2G16770.1); Has 147 Blast hits to 147 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 7; Plants - 136; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G35040.1p  transcript_id AT4G35040.1  protein_id AT4G35040.1p  transcript_id AT4G35040.1  
At4g35050	chr4:016684431	0.0	C/16684431-16684751,16683841-16684164,16683605-16683748,16683283-16683407,16683098-16683193,16682752-16683016	AT4G35050.1  CDS  gene_syn M4E13.110, M4E13_110, MSI3, MULTICOPY SUPPRESSOR OF IRA1 3, NFC3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3  gene MSI3  function Encodes a WD-40 repeat protein similar to yeast MSI1. The predicted protein has a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|IPI  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515|18223036|IPI  product MSI3 (MULTICOPY SUPPRESSOR OF IRA1 3); protein binding  note MULTICOPY SUPPRESSOR OF IRA1 3 (MSI3); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: MSI2 (MULTICOPY SUPPRESSOR OF IRA1 2) (TAIR:AT2G16780.1); Has 28340 Blast hits to 17637 proteins in 541 species: Archae - 18; Bacteria - 2663; Metazoa - 13121; Fungi - 5740; Plants - 2795; Viruses - 0; Other Eukaryotes - 4003 (source: NCBI BLink).  protein_id AT4G35050.1p  transcript_id AT4G35050.1  protein_id AT4G35050.1p  transcript_id AT4G35050.1  
At4g35060	chr4:016686345	0.0	C/16686345-16686419,16685874-16686260	AT4G35060.1  CDS  gene_syn T12J5.12  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related  note heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: ATFP6 (FARNESYLATED PROTEIN 6); metal ion binding (TAIR:AT4G38580.1); Has 574 Blast hits to 548 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 574; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G35060.1p  transcript_id AT4G35060.1  protein_id AT4G35060.1p  transcript_id AT4G35060.1  
At4g35070	chr4:016694488	0.0	W/16694488-16694763,16694866-16695387	AT4G35070.1  CDS  gene_syn T12J5.5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: SBP1 (s-ribonuclease binding protein 1); protein binding / zinc ion binding (TAIR:AT1G45976.1); Has 762 Blast hits to 716 proteins in 103 species: Archae - 2; Bacteria - 18; Metazoa - 250; Fungi - 8; Plants - 213; Viruses - 21; Other Eukaryotes - 250 (source: NCBI BLink).  protein_id AT4G35070.1p  transcript_id AT4G35070.1  protein_id AT4G35070.1p  transcript_id AT4G35070.1  
At4g35070	chr4:016694576	0.0	W/16694576-16694593,16694671-16694763,16694866-16695387	AT4G35070.2  CDS  gene_syn T12J5.5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: SBP1 (s-ribonuclease binding protein 1); protein binding / zinc ion binding (TAIR:AT1G45976.1); Has 495 Blast hits to 488 proteins in 78 species: Archae - 0; Bacteria - 9; Metazoa - 169; Fungi - 4; Plants - 212; Viruses - 13; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT4G35070.2p  transcript_id AT4G35070.2  protein_id AT4G35070.2p  transcript_id AT4G35070.2  
At4g35080	chr4:016698384	0.0	W/16698384-16698689,16699221-16699801,16699889-16700012	AT4G35080.2  CDS  gene_syn T12J5.1  go_component chloroplast|GO:0009507||IEA  go_component integral to membrane|GO:0016021||IEA  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component integral to membrane|GO:0016021||ISS  go_process nickel ion transport|GO:0015675||ISS  go_function nickel ion transmembrane transporter activity|GO:0015099||ISS  product high-affinity nickel-transport family protein  note high-affinity nickel-transport family protein; FUNCTIONS IN: nickel ion transmembrane transporter activity, metal ion binding; INVOLVED IN: nickel ion transport, metal ion transport; LOCATED IN: integral to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Nickel/cobalt transporter, high-affinity (InterPro:IPR011541); BEST Arabidopsis thaliana protein match is: high-affinity nickel-transport family protein (TAIR:AT2G16800.1); Has 291 Blast hits to 252 proteins in 43 species: Archae - 0; Bacteria - 59; Metazoa - 16; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).  protein_id AT4G35080.2p  transcript_id AT4G35080.2  protein_id AT4G35080.2p  transcript_id AT4G35080.2  
At4g35080	chr4:016698384	0.0	W/16698384-16698689,16699221-16700012	AT4G35080.1  CDS  gene_syn T12J5.1  go_component chloroplast|GO:0009507||IEA  go_component integral to membrane|GO:0016021||IEA  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component integral to membrane|GO:0016021||ISS  go_process nickel ion transport|GO:0015675||ISS  go_function nickel ion transmembrane transporter activity|GO:0015099||ISS  product high-affinity nickel-transport family protein  note high-affinity nickel-transport family protein; FUNCTIONS IN: nickel ion transmembrane transporter activity, metal ion binding; INVOLVED IN: nickel ion transport, metal ion transport; LOCATED IN: integral to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Nickel/cobalt transporter, high-affinity (InterPro:IPR011541); BEST Arabidopsis thaliana protein match is: high-affinity nickel-transport family protein (TAIR:AT2G16800.1); Has 348 Blast hits to 309 proteins in 63 species: Archae - 5; Bacteria - 92; Metazoa - 16; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink).  protein_id AT4G35080.1p  transcript_id AT4G35080.1  protein_id AT4G35080.1p  transcript_id AT4G35080.1  
At4g35090	chr4:016703201	0.0	C/16703201-16703215,16702844-16702940,16702490-16702767,16701635-16702411,16701463-16701552,16701294-16701361,16701105-16701204	AT4G35090.2  CDS  gene_syn CAT2, CATALASE, CATALASE 2, T12J5.2  gene CAT2  function Encodes a peroxisomal catalase, highly expressed in bolts and leaves. mRNA expression patterns show circadian regulation with mRNA levels being high in the subjective early morning. Loss of function mutations have increased H2O2 levels and increased H2O2 sensitivity. Mutants accumulate more toxic ions yet show decreased sensitivity to Li+. This decreased sensitivity is most likely due to an insensitivity to ethylene.  go_component peroxisome|GO:0005777|17951448|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component peroxisome|GO:0005777||NAS  go_component stromule|GO:0010319|16923014|IDA  go_process response to oxidative stress|GO:0006979|17877712|IMP  go_process cellular response to nitrogen starvation|GO:0006995|15032878|IEP  go_process cell death|GO:0008219|17877712|IMP  go_process response to cold|GO:0009409|16923014|IEP  go_process response to cold|GO:0009409|18230142|IEP  go_process response to light stimulus|GO:0009416|18230142|IEP  go_process photoperiodism|GO:0009648|17877712|IMP  go_process cellular response to sulfate starvation|GO:0009970|15032878|IEP  go_process cellular response to phosphate starvation|GO:0016036|15032878|IEP  go_process hydrogen peroxide catabolic process|GO:0042744||NAS  go_process cell redox homeostasis|GO:0045454|17877712|IMP  go_function catalase activity|GO:0004096|15200641|IMP  go_function catalase activity|GO:0004096||ISS  product CAT2 (CATALASE 2); catalase  note CATALASE 2 (CAT2); FUNCTIONS IN: catalase activity; INVOLVED IN: in 10 processes; LOCATED IN: mitochondrion, cytosolic ribosome, stromule, peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Catalase related subgroup (InterPro:IPR018028), Catalase (InterPro:IPR002226), Catalase, N-terminal (InterPro:IPR011614), Catalase-related immune responsive (InterPro:IPR010582); BEST Arabidopsis thaliana protein match is: CAT1 (CATALASE 1); catalase (TAIR:AT1G20630.1); Has 3545 Blast hits to 3535 proteins in 1070 species: Archae - 17; Bacteria - 2335; Metazoa - 387; Fungi - 356; Plants - 347; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).  protein_id AT4G35090.2p  transcript_id AT4G35090.2  protein_id AT4G35090.2p  transcript_id AT4G35090.2  
At4g35090	chr4:016703201	0.0	C/16703201-16703215,16702844-16702940,16702490-16702767,16701635-16702411,16701463-16701552,16701294-16701361,16701111-16701204,16700937-16700996	AT4G35090.1  CDS  gene_syn CAT2, CATALASE, CATALASE 2, T12J5.2  gene CAT2  function Encodes a peroxisomal catalase, highly expressed in bolts and leaves. mRNA expression patterns show circadian regulation with mRNA levels being high in the subjective early morning. Loss of function mutations have increased H2O2 levels and increased H2O2 sensitivity. Mutants accumulate more toxic ions yet show decreased sensitivity to Li+. This decreased sensitivity is most likely due to an insensitivity to ethylene.  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component peroxisome|GO:0005777||NAS  go_component stromule|GO:0010319|16923014|IDA  go_process response to oxidative stress|GO:0006979|17877712|IMP  go_process cellular response to nitrogen starvation|GO:0006995|15032878|IEP  go_process cell death|GO:0008219|17877712|IMP  go_process response to cold|GO:0009409|16923014|IEP  go_process response to cold|GO:0009409|18230142|IEP  go_process response to light stimulus|GO:0009416|18230142|IEP  go_process photoperiodism|GO:0009648|17877712|IMP  go_process cellular response to sulfate starvation|GO:0009970|15032878|IEP  go_process cellular response to phosphate starvation|GO:0016036|15032878|IEP  go_process hydrogen peroxide catabolic process|GO:0042744||NAS  go_process cell redox homeostasis|GO:0045454|17877712|IMP  go_function catalase activity|GO:0004096|15200641|IMP  go_function catalase activity|GO:0004096||ISS  product CAT2 (CATALASE 2); catalase  note CATALASE 2 (CAT2); FUNCTIONS IN: catalase activity; INVOLVED IN: in 10 processes; LOCATED IN: mitochondrion, cytosolic ribosome, stromule, peroxisome, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Catalase related subgroup (InterPro:IPR018028), Catalase (InterPro:IPR002226), Catalase, N-terminal (InterPro:IPR011614), Catalase-related immune responsive (InterPro:IPR010582); BEST Arabidopsis thaliana protein match is: CAT1 (CATALASE 1); catalase (TAIR:AT1G20630.1); Has 3546 Blast hits to 3536 proteins in 1070 species: Archae - 17; Bacteria - 2335; Metazoa - 387; Fungi - 356; Plants - 348; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).  protein_id AT4G35090.1p  transcript_id AT4G35090.1  protein_id AT4G35090.1p  transcript_id AT4G35090.1  
At4g35100	chr4:016708672	0.0	W/16708672-16708957,16709050-16709345,16709605-16709745,16709839-16709958	AT4G35100.1  CDS  gene_syn PIP2;7, PIP3, PIP3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, PLASMA MEMBRANE INTRINSIC PROTEIN 3, PLASMA MEMBRANE INTRINSIC PROTEIN 3A, SIMIP, T12J5.9  gene PIP3  function a member of the plasma membrane intrinsic protein PIP. functions as aquaporin. Salt-stress-inducible MIP  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component plasma membrane|GO:0005886|9276952|TAS  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_process response to salt stress|GO:0009651|16183846|IEP  go_function water channel activity|GO:0015250|9276952|IDA  go_function water channel activity|GO:0015250||ISS  product PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3); water channel  note PLASMA MEMBRANE INTRINSIC PROTEIN 3 (PIP3); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, response to salt stress; LOCATED IN: anchored to plasma membrane, nucleus, plasma membrane, vacuole, membrane; EXPRESSED IN: guard cell, cultured cell, callus, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: PIP2;8 (PLASMA MEMBRANE INTRINSIC PROTEIN 2;8); water channel (TAIR:AT2G16850.1); Has 6889 Blast hits to 6882 proteins in 1263 species: Archae - 57; Bacteria - 2667; Metazoa - 1272; Fungi - 294; Plants - 1493; Viruses - 2; Other Eukaryotes - 1104 (source: NCBI BLink).  protein_id AT4G35100.1p  transcript_id AT4G35100.1  protein_id AT4G35100.1p  transcript_id AT4G35100.1  
At4g35110	chr4:016713864	0.0	C/16713864-16713987,16713488-16713783,16712660-16713400	AT4G35110.1  CDS  gene_syn T12J5.14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16900.1); Has 495 Blast hits to 408 proteins in 102 species: Archae - 17; Bacteria - 39; Metazoa - 132; Fungi - 34; Plants - 131; Viruses - 35; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT4G35110.1p  transcript_id AT4G35110.1  protein_id AT4G35110.1p  transcript_id AT4G35110.1  
At4g35110	chr4:016713864	0.0	C/16713864-16713987,16713488-16713783,16712660-16713400	AT4G35110.2  CDS  gene_syn T12J5.14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16900.1); Has 495 Blast hits to 408 proteins in 102 species: Archae - 17; Bacteria - 39; Metazoa - 132; Fungi - 34; Plants - 131; Viruses - 35; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT4G35110.2p  transcript_id AT4G35110.2  protein_id AT4G35110.2p  transcript_id AT4G35110.2  
At4g35110	chr4:016714203	0.0	C/16714203-16714225,16713864-16714009,16713488-16713783,16712660-16713400	AT4G35110.3  CDS  gene_syn T12J5.14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16900.1); Has 491 Blast hits to 408 proteins in 102 species: Archae - 17; Bacteria - 39; Metazoa - 130; Fungi - 34; Plants - 131; Viruses - 35; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT4G35110.3p  transcript_id AT4G35110.3  protein_id AT4G35110.3p  transcript_id AT4G35110.3  
At4g35110	chr4:016714303	0.0	C/16714303-16714316,16713864-16714009,16713488-16713783,16712660-16713400	AT4G35110.4  CDS  gene_syn T12J5.14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16900.1); Has 412 Blast hits to 329 proteins in 86 species: Archae - 13; Bacteria - 24; Metazoa - 97; Fungi - 28; Plants - 128; Viruses - 35; Other Eukaryotes - 87 (source: NCBI BLink).  protein_id AT4G35110.4p  transcript_id AT4G35110.4  protein_id AT4G35110.4p  transcript_id AT4G35110.4  
At4g35120	chr4:016716806	0.0	W/16716806-16717638,16717681-16718017	AT4G35120.1  CDS  gene_syn T12J5.7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G19870.2); Has 1941 Blast hits to 1759 proteins in 141 species: Archae - 4; Bacteria - 93; Metazoa - 1054; Fungi - 7; Plants - 621; Viruses - 108; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT4G35120.1p  transcript_id AT4G35120.1  protein_id AT4G35120.1p  transcript_id AT4G35120.1  
At4g35130	chr4:016721084	0.0	C/16721084-16723498	AT4G35130.1  CDS  gene_syn T12J5.8  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: DOT4 (DEFECTIVELY ORGANIZED TRIBUTARIES 4) (TAIR:AT4G18750.1); Has 16114 Blast hits to 5008 proteins in 152 species: Archae - 0; Bacteria - 4; Metazoa - 43; Fungi - 76; Plants - 15744; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).  protein_id AT4G35130.1p  transcript_id AT4G35130.1  protein_id AT4G35130.1p  transcript_id AT4G35130.1  
At4g35140	chr4:016726349	0.0	C/16726349-16726477,16725957-16726208,16725724-16725867,16724904-16725635,16723873-16724106	AT4G35140.1  CDS  gene_syn T12J5.10, T12J5_10  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT4G38480.1); Has 7738 Blast hits to 5690 proteins in 350 species: Archae - 10; Bacteria - 1449; Metazoa - 3242; Fungi - 1387; Plants - 483; Viruses - 0; Other Eukaryotes - 1167 (source: NCBI BLink).  protein_id AT4G35140.1p  transcript_id AT4G35140.1  protein_id AT4G35140.1p  transcript_id AT4G35140.1  
At4g35150	chr4:016728207	0.0	C/16728207-16728531,16727753-16728081,16726948-16727271	AT4G35150.1  CDS  gene_syn T12J5.20, T12J5_20  go_function methyltransferase activity|GO:0008168||IEA  go_function O-methyltransferase activity|GO:0008171||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_component cytosol|GO:0005829|9484457|TAS  product O-methyltransferase family 2 protein  note O-methyltransferase family 2 protein; FUNCTIONS IN: methyltransferase activity, O-methyltransferase activity, protein dimerization activity; LOCATED IN: cytosol; CONTAINS InterPro DOMAIN/s: Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family 2 protein (TAIR:AT4G35160.1); Has 2009 Blast hits to 2001 proteins in 400 species: Archae - 0; Bacteria - 548; Metazoa - 83; Fungi - 439; Plants - 874; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT4G35150.1p  transcript_id AT4G35150.1  protein_id AT4G35150.1p  transcript_id AT4G35150.1  
At4g35160	chr4:016731984	0.0	C/16731984-16732808,16730989-16731312	AT4G35160.1  CDS  gene_syn T12J5.30, T12J5_30  go_function methyltransferase activity|GO:0008168||IEA  go_function O-methyltransferase activity|GO:0008171||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_component cytosol|GO:0005829|9484457|TAS  product O-methyltransferase family 2 protein  note O-methyltransferase family 2 protein; FUNCTIONS IN: methyltransferase activity, O-methyltransferase activity, protein dimerization activity; LOCATED IN: cytosol; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family 2 protein (TAIR:AT4G35150.1); Has 2083 Blast hits to 2078 proteins in 411 species: Archae - 0; Bacteria - 596; Metazoa - 87; Fungi - 457; Plants - 875; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT4G35160.1p  transcript_id AT4G35160.1  protein_id AT4G35160.1p  transcript_id AT4G35160.1  
At4g35165	chr4:016735292	0.0	W/16735292-16735654	AT4G35165.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14378.1); Has 83 Blast hits to 80 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G35165.1p  transcript_id AT4G35165.1  protein_id AT4G35165.1p  transcript_id AT4G35165.1  
At4g35170	chr4:016736839	0.0	W/16736839-16737264,16737626-16737811,16737899-16738186	AT4G35170.1  CDS  gene_syn T12J5.40, T12J5_40  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: stem, carpel; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41990.1); Has 82 Blast hits to 81 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G35170.1p  transcript_id AT4G35170.1  protein_id AT4G35170.1p  transcript_id AT4G35170.1  
At4g35180	chr4:016740117	0.0	C/16740117-16740385,16739878-16740011,16739329-16739744,16739092-16739223,16738517-16739002	AT4G35180.1  CDS  gene_syn LHT7, Lys/His transporter 7, T12J5.50, T12J5_50  gene LHT7  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product LHT7 (Lys/His transporter 7); amino acid transmembrane transporter  note Lys/His transporter 7 (LHT7); FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid transporter family protein (TAIR:AT1G47670.1); Has 947 Blast hits to 946 proteins in 150 species: Archae - 0; Bacteria - 25; Metazoa - 138; Fungi - 143; Plants - 557; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT4G35180.1p  transcript_id AT4G35180.1  protein_id AT4G35180.1p  transcript_id AT4G35180.1  
At4g35190	chr4:016746724	0.0	W/16746724-16746831,16746921-16747018,16747127-16747157,16747238-16747337,16747504-16747574,16747699-16747842,16747956-16748090	AT4G35190.1  CDS  gene_syn T12J5.60, T12J5_60  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37210.1); Has 3058 Blast hits to 3057 proteins in 743 species: Archae - 25; Bacteria - 1750; Metazoa - 10; Fungi - 79; Plants - 192; Viruses - 0; Other Eukaryotes - 1002 (source: NCBI BLink).  protein_id AT4G35190.1p  transcript_id AT4G35190.1  protein_id AT4G35190.1p  transcript_id AT4G35190.1  
At4g35200	chr4:016749142	0.0	C/16749142-16749903	AT4G35200.1  CDS  gene_syn T12J5.70, T12J5_70  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF241, plant (InterPro:IPR004320); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35210.1); Has 271 Blast hits to 263 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 264; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G35200.1p  transcript_id AT4G35200.1  protein_id AT4G35200.1p  transcript_id AT4G35200.1  
At4g35210	chr4:016751428	0.0	W/16751428-16752180	AT4G35210.1  CDS  gene_syn T12J5.80, T12J5_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF241, plant (InterPro:IPR004320); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35200.1); Has 280 Blast hits to 272 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 0; Plants - 249; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT4G35210.1p  transcript_id AT4G35210.1  protein_id AT4G35210.1p  transcript_id AT4G35210.1  
At4g35220	chr4:016752636	0.0	W/16752636-16753041,16753124-16753168,16753309-16753381,16753450-16753547,16753671-16753741,16753841-16753966	AT4G35220.1  CDS  gene_syn F23E12.220, F23E12_220  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product cyclase family protein  note cyclase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Putative cyclase (InterPro:IPR007325); BEST Arabidopsis thaliana protein match is: cyclase family protein (TAIR:AT4G34180.1); Has 778 Blast hits to 778 proteins in 304 species: Archae - 55; Bacteria - 578; Metazoa - 30; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT4G35220.1p  transcript_id AT4G35220.1  protein_id AT4G35220.1p  transcript_id AT4G35220.1  
At4g35230	chr4:016757688	0.0	C/16757688-16758041,16757462-16757597,16757139-16757272,16756935-16757040,16756724-16756809,16756176-16756364,16755930-16756094,16755729-16755842,16755325-16755579	AT4G35230.1  CDS  gene_syn BR-SIGNALING KINASE 1, BSK1, F23E12.210, F23E12_210  gene BSK1  function Encodes BR-signaling kinase 1 (BSK1), one of the three homologous BR-signaling kinases (BSK1, AT4G35230; BSK2, AT5G46570; BSK3, AT4G00710). Mediates signal transduction from receptor kinase BRI1 by functioning as the substrate of BRI1. Plasma membrane localized.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function binding|GO:0005488||IEA  go_function ATP binding|GO:0005524||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component plasma membrane|GO:0005886|18653891|IDA  go_process brassinosteroid mediated signaling|GO:0009742|18653891|IDA  go_function kinase activity|GO:0016301||ISS  product BSK1 (BR-SIGNALING KINASE 1); ATP binding / binding / kinase/ protein kinase/ protein tyrosine kinase  note BR-SIGNALING KINASE 1 (BSK1); FUNCTIONS IN: protein tyrosine kinase activity, binding, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: brassinosteroid mediated signaling, N-terminal protein myristoylation; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Tetratricopeptide-like helical (InterPro:IPR011990), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase-related (TAIR:AT5G59010.1); Has 22771 Blast hits to 22436 proteins in 902 species: Archae - 6; Bacteria - 1408; Metazoa - 7109; Fungi - 290; Plants - 12396; Viruses - 88; Other Eukaryotes - 1474 (source: NCBI BLink).  protein_id AT4G35230.1p  transcript_id AT4G35230.1  protein_id AT4G35230.1p  transcript_id AT4G35230.1  
At4g35240	chr4:016762953	0.0	C/16762953-16764324,16762644-16762786,16762319-16762542,16761479-16762226	AT4G35240.1  CDS  gene_syn F23E12.200, F23E12_200  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  product unknown protein  note unknown protein; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17110.1); Has 1448 Blast hits to 1261 proteins in 159 species: Archae - 0; Bacteria - 19; Metazoa - 476; Fungi - 279; Plants - 590; Viruses - 4; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT4G35240.1p  transcript_id AT4G35240.1  protein_id AT4G35240.1p  transcript_id AT4G35240.1  
At4g35250	chr4:016772883	0.0	C/16772883-16773269,16772696-16772794,16772329-16772523,16772115-16772207,16771925-16772020,16771692-16771832,16771401-16771577	AT4G35250.1  CDS  gene_syn F23E12.190, F23E12_190  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process regulation of nitrogen utilization|GO:0006808||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function transcription repressor activity|GO:0016564||IEA  product vestitone reductase-related  note vestitone reductase-related; FUNCTIONS IN: transcription repressor activity, binding, catalytic activity; INVOLVED IN: regulation of nitrogen utilization, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: flavin reductase-related (TAIR:AT2G34460.1); Has 2853 Blast hits to 2853 proteins in 675 species: Archae - 20; Bacteria - 1994; Metazoa - 46; Fungi - 85; Plants - 272; Viruses - 0; Other Eukaryotes - 436 (source: NCBI BLink).  protein_id AT4G35250.1p  transcript_id AT4G35250.1  protein_id AT4G35250.1p  transcript_id AT4G35250.1  
At4g35260	chr4:016775724	0.0	C/16775724-16776233,16775364-16775603,16774869-16774947,16774494-16774768	AT4G35260.1  CDS  gene_syn F23E12.180, F23E12_180, IDH1, ISOCITRATE DEHYDROGENASE 1, NAD+ DEPENDENT ISOCITRATE DEHYDROGENASE SUBUNIT 1  gene IDH1  function NAD+ dependent isocitrate dehydrogenase subunit 1 (IDH1)  go_process tricarboxylic acid cycle|GO:0006099||IEA  go_process metabolic process|GO:0008152||IEA  go_function isocitrate dehydrogenase (NAD+) activity|GO:0004449||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process metabolic process|GO:0008152||ISS  go_function isocitrate dehydrogenase (NAD+) activity|GO:0004449||ISS  product IDH1 (ISOCITRATE DEHYDROGENASE 1); isocitrate dehydrogenase (NAD+)/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor  note ISOCITRATE DEHYDROGENASE 1 (IDH1); FUNCTIONS IN: isocitrate dehydrogenase (NAD+) activity, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; INVOLVED IN: tricarboxylic acid cycle, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804), Isocitrate dehydrogenase NAD-dependent, mitochondrial (InterPro:IPR004434); BEST Arabidopsis thaliana protein match is: IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2); isocitrate dehydrogenase (NAD+)/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor (TAIR:AT2G17130.1); Has 11439 Blast hits to 11335 proteins in 1598 species: Archae - 250; Bacteria - 5634; Metazoa - 524; Fungi - 556; Plants - 152; Viruses - 0; Other Eukaryotes - 4323 (source: NCBI BLink).  protein_id AT4G35260.1p  transcript_id AT4G35260.1  protein_id AT4G35260.1p  transcript_id AT4G35260.1  
At4g35263	chr4:016776630	0.0	C/16776630-16776797	AT4G35263.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G35263.1p  transcript_id AT4G35263.1  protein_id AT4G35263.1p  transcript_id AT4G35263.1  
At4g35270	chr4:016779904	0.0	C/16779904-16780824,16779662-16779816,16778629-16779596,16777657-16778537	AT4G35270.1  CDS  gene_syn F23E12.170, F23E12_170  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product RWP-RK domain-containing protein  note RWP-RK domain-containing protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: RWP-RK domain-containing protein (TAIR:AT2G17150.1); Has 355 Blast hits to 318 proteins in 44 species: Archae - 0; Bacteria - 8; Metazoa - 14; Fungi - 13; Plants - 285; Viruses - 3; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT4G35270.1p  transcript_id AT4G35270.1  protein_id AT4G35270.1p  transcript_id AT4G35270.1  
At4g35280	chr4:016787429	0.0	C/16787429-16788283	AT4G35280.1  CDS  gene_syn F23E12.160, F23E12_160  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT2G17180.1); Has 1336 Blast hits to 1190 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 743; Fungi - 0; Plants - 568; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT4G35280.1p  transcript_id AT4G35280.1  protein_id AT4G35280.1p  transcript_id AT4G35280.1  
At4g35290	chr4:016790290	0.0	W/16790290-16790548,16790635-16791983,16792076-16792353,16792444-16792475,16792560-16792954,16793036-16793461	AT4G35290.1  CDS  gene_syn ATGLR3.2, ATGLUR2, F23E12.150, F23E12_150, GLR3.2, GLUR2, GLUTAMATE RECEPTOR 2, GLUTAMATE RECEPTOR 3.2  gene GLUR2  function Encodes a putative glutamate receptor like-protein, member of Putative ligand-gated ion channel subunit family  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process cellular calcium ion homeostasis|GO:0006874|11158446|IMP  go_process cellular sodium ion homeostasis|GO:0006883|11158446|IMP  go_process response to light stimulus|GO:0009416|11379626|NAS  go_process cellular potassium ion homeostasis|GO:0030007|11158446|IMP  go_function intracellular ligand-gated ion channel activity|GO:0005217||ISS  product GLUR2 (GLUTAMATE RECEPTOR 2); intracellular ligand-gated ion channel  note GLUTAMATE RECEPTOR 2 (GLUR2); FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, cellular sodium ion homeostasis, response to light stimulus, cellular potassium ion homeostasis; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: inflorescence meristem, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: GLR2 (GLUTAMATE RECEPTOR 2); intracellular ligand-gated ion channel (TAIR:AT2G17260.1); Has 4763 Blast hits to 4666 proteins in 332 species: Archae - 15; Bacteria - 465; Metazoa - 3844; Fungi - 0; Plants - 308; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).  protein_id AT4G35290.1p  transcript_id AT4G35290.1  protein_id AT4G35290.1p  transcript_id AT4G35290.1  
At4g35290	chr4:016790290	0.0	W/16790290-16790548,16790635-16791983,16792076-16792353,16792444-16792475,16792560-16792954,16793036-16793461	AT4G35290.2  CDS  gene_syn ATGLR3.2, ATGLUR2, F23E12.150, F23E12_150, GLR3.2, GLUR2, GLUTAMATE RECEPTOR 2, GLUTAMATE RECEPTOR 3.2  gene GLUR2  function Encodes a putative glutamate receptor like-protein, member of Putative ligand-gated ion channel subunit family  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process cellular calcium ion homeostasis|GO:0006874|11158446|IMP  go_process cellular sodium ion homeostasis|GO:0006883|11158446|IMP  go_process response to light stimulus|GO:0009416|11379626|NAS  go_process cellular potassium ion homeostasis|GO:0030007|11158446|IMP  go_function intracellular ligand-gated ion channel activity|GO:0005217||ISS  product GLUR2 (GLUTAMATE RECEPTOR 2); intracellular ligand-gated ion channel  note GLUTAMATE RECEPTOR 2 (GLUR2); FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, cellular sodium ion homeostasis, response to light stimulus, cellular potassium ion homeostasis; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: inflorescence meristem, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: GLR2 (GLUTAMATE RECEPTOR 2); intracellular ligand-gated ion channel (TAIR:AT2G17260.1); Has 4763 Blast hits to 4666 proteins in 332 species: Archae - 15; Bacteria - 465; Metazoa - 3844; Fungi - 0; Plants - 308; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).  protein_id AT4G35290.2p  transcript_id AT4G35290.2  protein_id AT4G35290.2p  transcript_id AT4G35290.2  
At4g35295	chr4:016795333	0.0	W/16795333-16795383,16795873-16795947,16796014-16796223	AT4G35295.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function homoserine kinase activity|GO:0004413||ISS  product homoserine kinase, putative / HSK, putative  note homoserine kinase, putative / HSK, putative; FUNCTIONS IN: homoserine kinase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: HSK (HOMOSERINE KINASE); homoserine kinase (TAIR:AT2G17265.1); Has 17 Blast hits to 17 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G35295.1p  transcript_id AT4G35295.1  protein_id AT4G35295.1p  transcript_id AT4G35295.1  
At4g35300	chr4:016798993	0.0	C/16798993-16799071,16798278-16798844,16797255-16798195,16796971-16797158,16796432-16796876	AT4G35300.1  CDS  gene_syn F23E12.140, F23E12_140, TMT2, TONOPLAST MONOSACCHARIDE TRANSPORTER2  gene TMT2  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020||ISS  go_process response to cold|GO:0009409|17158605|IEP  go_process response to water deprivation|GO:0009414|17158605|IEP  go_process response to salt stress|GO:0009651|17158605|IEP  go_process response to sucrose stimulus|GO:0009744|17158605|IEP  go_process response to glucose stimulus|GO:0009749|17158605|IEP  go_process response to fructose stimulus|GO:0009750|17158605|IEP  go_function nucleoside transmembrane transporter activity|GO:0005337||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2); carbohydrate transmembrane transporter/ nucleoside transmembrane transporter/ sugar:hydrogen symporter  note TONOPLAST MONOSACCHARIDE TRANSPORTER2 (TMT2); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, nucleoside transmembrane transporter activity; INVOLVED IN: in 6 processes; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: TMT1 (TONOPLAST MONOSACCHARIDE TRANSPORTER1); carbohydrate transmembrane transporter/ nucleoside transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT1G20840.1); Has 31955 Blast hits to 24066 proteins in 1440 species: Archae - 414; Bacteria - 13999; Metazoa - 6075; Fungi - 7762; Plants - 2061; Viruses - 0; Other Eukaryotes - 1644 (source: NCBI BLink).  protein_id AT4G35300.1p  transcript_id AT4G35300.1  protein_id AT4G35300.1p  transcript_id AT4G35300.1  
At4g35300	chr4:016798993	0.0	C/16798993-16799071,16798278-16798844,16797545-16798195,16797255-16797514,16796971-16797158,16796432-16796876	AT4G35300.2  CDS  gene_syn F23E12.140, F23E12_140, TMT2, TONOPLAST MONOSACCHARIDE TRANSPORTER2  gene TMT2  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020||ISS  go_process response to cold|GO:0009409|17158605|IEP  go_process response to water deprivation|GO:0009414|17158605|IEP  go_process response to salt stress|GO:0009651|17158605|IEP  go_process response to sucrose stimulus|GO:0009744|17158605|IEP  go_process response to glucose stimulus|GO:0009749|17158605|IEP  go_process response to fructose stimulus|GO:0009750|17158605|IEP  go_function nucleoside transmembrane transporter activity|GO:0005337||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2); carbohydrate transmembrane transporter/ nucleoside transmembrane transporter/ sugar:hydrogen symporter  note TONOPLAST MONOSACCHARIDE TRANSPORTER2 (TMT2); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, nucleoside transmembrane transporter activity; INVOLVED IN: in 6 processes; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Sugar/inositol transporter (InterPro:IPR003663), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: TMT1 (TONOPLAST MONOSACCHARIDE TRANSPORTER1); carbohydrate transmembrane transporter/ nucleoside transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT1G20840.1); Has 31958 Blast hits to 24069 proteins in 1440 species: Archae - 414; Bacteria - 13999; Metazoa - 6075; Fungi - 7762; Plants - 2063; Viruses - 0; Other Eukaryotes - 1645 (source: NCBI BLink).  protein_id AT4G35300.2p  transcript_id AT4G35300.2  protein_id AT4G35300.2p  transcript_id AT4G35300.2  
At4g35300	chr4:016798993	0.0	C/16798993-16799071,16798278-16798844,16797545-16798195,16797255-16797514,16796971-16797158,16796432-16796876	AT4G35300.3  CDS  gene_syn F23E12.140, F23E12_140, TMT2, TONOPLAST MONOSACCHARIDE TRANSPORTER2  gene TMT2  go_component membrane|GO:0016020||ISS  go_process response to cold|GO:0009409|17158605|IEP  go_process response to water deprivation|GO:0009414|17158605|IEP  go_process response to salt stress|GO:0009651|17158605|IEP  go_process response to sucrose stimulus|GO:0009744|17158605|IEP  go_process response to glucose stimulus|GO:0009749|17158605|IEP  go_process response to fructose stimulus|GO:0009750|17158605|IEP  go_function nucleoside transmembrane transporter activity|GO:0005337||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2); carbohydrate transmembrane transporter/ nucleoside transmembrane transporter/ sugar:hydrogen symporter  note TONOPLAST MONOSACCHARIDE TRANSPORTER2 (TMT2); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, nucleoside transmembrane transporter activity; INVOLVED IN: in 6 processes; LOCATED IN: membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Sugar/inositol transporter (InterPro:IPR003663), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: TMT1 (TONOPLAST MONOSACCHARIDE TRANSPORTER1); carbohydrate transmembrane transporter/ nucleoside transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT1G20840.1).  protein_id AT4G35300.3p  transcript_id AT4G35300.3  protein_id AT4G35300.3p  transcript_id AT4G35300.3  
At4g35310	chr4:016802436	0.0	W/16802436-16803189,16803272-16803415,16803509-16803661,16803731-16803846,16803942-16804109,16804194-16804418,16804518-16804628	AT4G35310.1  CDS  gene_syn ATCPK5, CALMODULIN-DOMAIN PROTEIN KINASE 5, CPK5, F23E12.130, F23E12_130, calmodulin-domain protein kinase 5  gene CPK5  function calmodulin-domain protein kinase CDPK isoform 5 (CPK5)  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_component membrane|GO:0016020|12068094|TAS  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  go_function kinase activity|GO:0016301||ISS  product CPK5 (calmodulin-domain protein kinase 5); ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase  note calmodulin-domain protein kinase 5 (CPK5); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: cytosol, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6); ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT2G17290.1); Has 97945 Blast hits to 91857 proteins in 2676 species: Archae - 60; Bacteria - 7579; Metazoa - 41597; Fungi - 12079; Plants - 17295; Viruses - 429; Other Eukaryotes - 18906 (source: NCBI BLink).  protein_id AT4G35310.1p  transcript_id AT4G35310.1  protein_id AT4G35310.1p  transcript_id AT4G35310.1  
At4g35320	chr4:016806139	0.0	C/16806139-16806582	AT4G35320.1  CDS  gene_syn F23E12.120, F23E12_120  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17300.1); Has 27 Blast hits to 27 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G35320.1p  transcript_id AT4G35320.1  protein_id AT4G35320.1p  transcript_id AT4G35320.1  
At4g35335	chr4:016807286	0.0	W/16807286-16807312,16807406-16807460,16807532-16807601,16807673-16807784,16807911-16807989,16808136-16808211,16808327-16808427,16808564-16808635,16808805-16808853,16808951-16808992,16809152-16809273,16809445-16809504,16809599-16809647,16809729-16809823,16809967-16810015	AT4G35335.1  CDS  gene_syn AT4G35330, AT4G35340  go_process carbohydrate transport|GO:0008643||IEA  go_process nucleotide-sugar transport|GO:0015780||IEA  go_function nucleotide-sugar transmembrane transporter activity|GO:0005338||IEA  go_function sugar:hydrogen symporter activity|GO:0005351||IEA  go_component membrane|GO:0016020|11152613|ISS  go_function nucleotide-sugar transmembrane transporter activity|GO:0005338||ISS  product nucleotide-sugar transmembrane transporter/ sugar:hydrogen symporter  note nucleotide-sugar transmembrane transporter/ sugar:hydrogen symporter; FUNCTIONS IN: nucleotide-sugar transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: carbohydrate transport, nucleotide-sugar transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide-sugar transporter (InterPro:IPR007271), UDP-galactose transporter (InterPro:IPR004689); BEST Arabidopsis thaliana protein match is: nucleotide-sugar transporter family protein (TAIR:AT5G41760.2); Has 722 Blast hits to 715 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 484; Fungi - 66; Plants - 90; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT4G35335.1p  transcript_id AT4G35335.1  protein_id AT4G35335.1p  transcript_id AT4G35335.1  
At4g35350	chr4:016810529	0.0	W/16810529-16811003,16811098-16811333,16811423-16811563,16811660-16811875	AT4G35350.1  CDS  gene_syn F23E12.90, F23E12_90, XCP1, XYLEM CYSTEINE PEPTIDASE 1  gene XCP1  function tracheary element vacuolar protein  go_component nucleus|GO:0005634|14617066|IDA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_component plant-type vacuole|GO:0000325|11788755|IDA  go_process proteolysis|GO:0006508||ISS  go_process developmental programmed cell death|GO:0010623|18573193|IMP  go_function cysteine-type peptidase activity|GO:0008234||ISS  product XCP1 (XYLEM CYSTEINE PEPTIDASE 1); cysteine-type endopeptidase/ cysteine-type peptidase  note XYLEM CYSTEINE PEPTIDASE 1 (XCP1); FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis, developmental programmed cell death; LOCATED IN: nucleus, plant-type vacuole; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain (InterPro:IPR013128), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: XCP2 (xylem cysteine peptidase 2); cysteine-type peptidase/ peptidase (TAIR:AT1G20850.1); Has 6090 Blast hits to 6042 proteins in 574 species: Archae - 29; Bacteria - 92; Metazoa - 2851; Fungi - 4; Plants - 1230; Viruses - 116; Other Eukaryotes - 1768 (source: NCBI BLink).  protein_id AT4G35350.1p  transcript_id AT4G35350.1  protein_id AT4G35350.1p  transcript_id AT4G35350.1  
At4g35350	chr4:016810529	0.0	W/16810529-16811003,16811098-16811333,16811423-16811578	AT4G35350.2  CDS  gene_syn F23E12.90, F23E12_90, XCP1, XYLEM CYSTEINE PEPTIDASE 1  gene XCP1  function tracheary element vacuolar protein  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_component plant-type vacuole|GO:0000325|11788755|IDA  go_process proteolysis|GO:0006508||ISS  go_process developmental programmed cell death|GO:0010623|18573193|IMP  go_function cysteine-type peptidase activity|GO:0008234||ISS  product XCP1 (XYLEM CYSTEINE PEPTIDASE 1); cysteine-type endopeptidase/ cysteine-type peptidase  note XYLEM CYSTEINE PEPTIDASE 1 (XCP1); FUNCTIONS IN: cysteine-type peptidase activity, cysteine-type endopeptidase activity; INVOLVED IN: proteolysis, developmental programmed cell death; LOCATED IN: plant-type vacuole; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: XCP2 (xylem cysteine peptidase 2); cysteine-type peptidase/ peptidase (TAIR:AT1G20850.1); Has 5446 Blast hits to 5435 proteins in 551 species: Archae - 17; Bacteria - 45; Metazoa - 2667; Fungi - 4; Plants - 1135; Viruses - 113; Other Eukaryotes - 1465 (source: NCBI BLink).  protein_id AT4G35350.2p  transcript_id AT4G35350.2  protein_id AT4G35350.2p  transcript_id AT4G35350.2  
At4g35360	chr4:016814487	0.0	C/16814487-16814656,16814116-16814181,16813946-16814012,16813806-16813874,16813585-16813725,16813362-16813490,16813165-16813251,16812959-16813033,16812801-16812878,16812631-16812708,16812479-16812541,16812303-16812383	AT4G35360.1  CDS  gene_syn F23E12.80, F23E12_80  go_component cellular_component|GO:0005575||ND  go_function pantothenate kinase activity|GO:0004594||ISS  product pantothenate kinase family protein  note pantothenate kinase family protein; FUNCTIONS IN: pantothenate kinase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF89 (InterPro:IPR002791), Uncharacterised conserved protein UCP030210 (InterPro:IPR016949); BEST Arabidopsis thaliana protein match is: pantothenate kinase-related (TAIR:AT2G17340.1); Has 220 Blast hits to 220 proteins in 81 species: Archae - 29; Bacteria - 31; Metazoa - 87; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT4G35360.1p  transcript_id AT4G35360.1  protein_id AT4G35360.1p  transcript_id AT4G35360.1  
At4g35370	chr4:016815138	0.0	W/16815138-16815384,16815480-16815559,16815635-16815845,16815920-16815988,16816082-16816111,16816210-16816258,16816356-16816452,16816541-16816615,16816725-16816823,16816915-16817040,16817119-16817211,16817299-16817377,16817458-16817504	AT4G35370.1  CDS  gene_syn F23E12.70, F23E12_70  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product nucleotide binding  note nucleotide binding; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, cultured cell; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT4G18905.1); Has 21768 Blast hits to 13632 proteins in 446 species: Archae - 20; Bacteria - 2507; Metazoa - 9532; Fungi - 4832; Plants - 2102; Viruses - 0; Other Eukaryotes - 2775 (source: NCBI BLink).  protein_id AT4G35370.1p  transcript_id AT4G35370.1  protein_id AT4G35370.1p  transcript_id AT4G35370.1  
At4g35380	chr4:016819883	0.0	W/16819883-16821243,16821348-16821687,16821773-16822195,16822390-16822682,16822791-16823064,16823159-16823655,16823748-16824069,16824143-16824497,16824585-16825240,16825361-16825960	AT4G35380.1  CDS  gene_syn F23E12.60, F23E12_60  go_component intracellular|GO:0005622||IEA  go_process regulation of ARF protein signal transduction|GO:0032012||IEA  go_function ARF guanyl-nucleotide exchange factor activity|GO:0005086||IEA  go_function binding|GO:0005488||IEA  go_function guanyl-nucleotide exchange factor activity|GO:0005085||ISS  product guanine nucleotide exchange family protein  note guanine nucleotide exchange family protein; FUNCTIONS IN: binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity; INVOLVED IN: regulation of ARF protein signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904), Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF1981, SEC7 associated (InterPro:IPR015403); BEST Arabidopsis thaliana protein match is: guanine nucleotide exchange family protein (TAIR:AT4G38200.1); Has 2187 Blast hits to 1960 proteins in 179 species: Archae - 2; Bacteria - 26; Metazoa - 1286; Fungi - 389; Plants - 126; Viruses - 0; Other Eukaryotes - 358 (source: NCBI BLink).  protein_id AT4G35380.1p  transcript_id AT4G35380.1  protein_id AT4G35380.1p  transcript_id AT4G35380.1  
At4g35390	chr4:016829603	0.0	W/16829603-16830502	AT4G35390.1  CDS  gene_syn AGF1, AT-hook protein of GA feedback 1, F23E12.50, F23E12_50  gene AGF1  go_component nucleus|GO:0005634|17277098|IDA  go_process negative regulation of gibberellic acid mediated signaling|GO:0009938|17277098|IEP  go_function transcription factor activity|GO:0003700|17277098|IDA  product AGF1 (AT-hook protein of GA feedback 1); transcription factor  note AT-hook protein of GA feedback 1 (AGF1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: negative regulation of gibberellic acid mediated signaling; LOCATED IN: nucleus; EXPRESSED IN: stem, flower, terminal floral bud, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: SOB3 (SUPPRESSOR OF PHYB-4 3); DNA binding (TAIR:AT1G76500.1); Has 599 Blast hits to 591 proteins in 77 species: Archae - 2; Bacteria - 54; Metazoa - 47; Fungi - 12; Plants - 421; Viruses - 2; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT4G35390.1p  transcript_id AT4G35390.1  protein_id AT4G35390.1p  transcript_id AT4G35390.1  
At4g35400	chr4:016831153	0.0	W/16831153-16831383	AT4G35400.1  mRNA_TE_gene  pseudo  gene_syn F23E12.40, F23E12_40  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48250.1)  
At4g35410	chr4:016832572	0.0	W/16832572-16832574,16832924-16833010,16833084-16833284,16833393-16833428,16833540-16833626,16833722-16833796	AT4G35410.2  CDS  gene_syn F23E12.30, F23E12_30  go_component membrane coat|GO:0030117||IEA  go_component clathrin coat of trans-Golgi network vesicle|GO:0030130||IEA  go_component clathrin adaptor complex|GO:0030131||IEA  go_process transport|GO:0006810||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process protein transport|GO:0015031||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function protein binding|GO:0005515||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component clathrin vesicle coat|GO:0030125||ISS  go_process intracellular protein transport|GO:0006886||ISS  product clathrin adaptor complex small chain family protein  note clathrin adaptor complex small chain family protein; FUNCTIONS IN: protein transporter activity, protein binding; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport, protein transport; LOCATED IN: membrane coat, clathrin vesicle coat, clathrin coat of trans-Golgi network vesicle, clathrin adaptor complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor AP1, sigma subunit (InterPro:IPR015604), Adaptor protein complex, sigma subunit (InterPro:IPR016635), Clathrin adaptor, sigma subunit/coatomer, zeta subunit (InterPro:IPR000804), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: AP19; protein binding / protein transporter (TAIR:AT2G17380.1); Has 1428 Blast hits to 1427 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 679; Fungi - 317; Plants - 140; Viruses - 0; Other Eukaryotes - 292 (source: NCBI BLink).  protein_id AT4G35410.2p  transcript_id AT4G35410.2  protein_id AT4G35410.2p  transcript_id AT4G35410.2  
At4g35410	chr4:016832572	0.0	W/16832572-16832574,16832924-16833010,16833084-16833284,16833393-16833476	AT4G35410.1  CDS  gene_syn F23E12.30, F23E12_30  go_component membrane coat|GO:0030117||IEA  go_component clathrin coat of trans-Golgi network vesicle|GO:0030130||IEA  go_component clathrin adaptor complex|GO:0030131||IEA  go_process transport|GO:0006810||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process protein transport|GO:0015031||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function protein binding|GO:0005515||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component clathrin vesicle coat|GO:0030125||ISS  go_process intracellular protein transport|GO:0006886||ISS  product clathrin adaptor complex small chain family protein  note clathrin adaptor complex small chain family protein; FUNCTIONS IN: protein transporter activity, protein binding; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport, protein transport; LOCATED IN: membrane coat, clathrin vesicle coat, clathrin coat of trans-Golgi network vesicle, clathrin adaptor complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor AP1, sigma subunit (InterPro:IPR015604), Adaptor protein complex, sigma subunit (InterPro:IPR016635), Clathrin adaptor, sigma subunit/coatomer, zeta subunit (InterPro:IPR000804), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: AP19; protein binding / protein transporter (TAIR:AT2G17380.1); Has 1254 Blast hits to 1253 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 607; Fungi - 265; Plants - 126; Viruses - 0; Other Eukaryotes - 256 (source: NCBI BLink).  protein_id AT4G35410.1p  transcript_id AT4G35410.1  protein_id AT4G35410.1p  transcript_id AT4G35410.1  
At4g35420	chr4:016835494	0.0	C/16835494-16835611,16835243-16835412,16834955-16835143,16834628-16834790,16834332-16834524,16834091-16834238	AT4G35420.1  CDS  gene_syn F15J1.1  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  product dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family  note dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: cellular metabolic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, hypocotyl, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamyl-alcohol dehydrogenase, putative (CAD) (TAIR:AT5G19440.1); Has 7550 Blast hits to 7537 proteins in 1113 species: Archae - 140; Bacteria - 2852; Metazoa - 261; Fungi - 555; Plants - 1434; Viruses - 44; Other Eukaryotes - 2264 (source: NCBI BLink).  protein_id AT4G35420.1p  transcript_id AT4G35420.1  protein_id AT4G35420.1p  transcript_id AT4G35420.1  
At4g35430	chr4:016836186	0.0	C/16836186-16836383	AT4G35430.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G35430.1p  transcript_id AT4G35430.1  protein_id AT4G35430.1p  transcript_id AT4G35430.1  
At4g35440	chr4:016838658	0.0	C/16838658-16839345,16838361-16838564,16837816-16838279,16837125-16837646,16836849-16837057,16836384-16836429	AT4G35440.1  CDS  gene_syn ATCLC-E, CHLORIDE CHANNEL E, CLC-E, CLCE, F15J1.10, F15J1_10  gene CLC-E  function Enclodes a choride channel protein that is localized to the thlakoid membrane.  go_process chloride transport|GO:0006821||IEA  go_function ion channel activity|GO:0005216||IEA  go_function voltage-gated chloride channel activity|GO:0005247||IEA  go_component chloroplast thylakoid membrane|GO:0009535|17872921|IDA  go_component membrane|GO:0016020||ISS  go_process chloride transport|GO:0006821||ISS  go_function voltage-gated chloride channel activity|GO:0005247||ISS  product CLC-E (CHLORIDE CHANNEL E); ion channel/ voltage-gated chloride channel  note CHLORIDE CHANNEL E (CLC-E); FUNCTIONS IN: ion channel activity, voltage-gated chloride channel activity; INVOLVED IN: chloride transport; LOCATED IN: chloroplast thylakoid membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chloride channel, core (InterPro:IPR014743), Chloride channel, voltage gated (InterPro:IPR001807), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CLC-F (CHLORIDE CHANNEL F); ion channel/ voltage-gated chloride channel (TAIR:AT1G55620.2); Has 4859 Blast hits to 4805 proteins in 1043 species: Archae - 78; Bacteria - 3010; Metazoa - 642; Fungi - 203; Plants - 108; Viruses - 0; Other Eukaryotes - 818 (source: NCBI BLink).  protein_id AT4G35440.1p  transcript_id AT4G35440.1  protein_id AT4G35440.1p  transcript_id AT4G35440.1  
At4g35450	chr4:016839862	0.0	W/16839862-16839898,16839995-16840128,16840210-16840422,16840517-16840665,16840756-16840918,16841048-16841140,16841422-16841561,16841660-16841759	AT4G35450.1  CDS  gene_syn AFT, AKR2, AKR2A, ANKYRIN REPEAT-CONTAINING PROTEIN 2, F15J1.20, F15J1_20  gene AKR2  function Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component integral to chloroplast outer membrane|GO:0031359|18193034|IDA  go_process protein folding|GO:0006457|18193034|IDA  go_process defense response to bacterium, incompatible interaction|GO:0009816|11862948|IMP  go_process protein targeting to chloroplast|GO:0045036|18193034|IDA  go_process protein targeting to chloroplast|GO:0045036|18193034|IMP  go_function protein binding|GO:0005515||ISS  product AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2); protein binding  note ANKYRIN REPEAT-CONTAINING PROTEIN 2 (AKR2); FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, response to cadmium ion, protein targeting to chloroplast, defense response to bacterium, incompatible interaction; LOCATED IN: integral to chloroplast outer membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: AKR2B (ANKYRIN REPEAT-CONTAINING 2B); protein binding / transcription regulator (TAIR:AT2G17390.1); Has 71932 Blast hits to 23219 proteins in 882 species: Archae - 94; Bacteria - 4306; Metazoa - 39416; Fungi - 3995; Plants - 2101; Viruses - 864; Other Eukaryotes - 21156 (source: NCBI BLink).  protein_id AT4G35450.1p  transcript_id AT4G35450.1  protein_id AT4G35450.1p  transcript_id AT4G35450.1  
At4g35450	chr4:016839862	0.0	W/16839862-16839898,16839995-16840128,16840210-16840422,16840517-16840665,16840756-16840918,16841048-16841140,16841422-16841561,16841660-16841759	AT4G35450.2  CDS  gene_syn AFT, AKR2, AKR2A, ANKYRIN REPEAT-CONTAINING PROTEIN 2, F15J1.20, F15J1_20  gene AKR2  function Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component integral to chloroplast outer membrane|GO:0031359|18193034|IDA  go_process protein folding|GO:0006457|18193034|IDA  go_process defense response to bacterium, incompatible interaction|GO:0009816|11862948|IMP  go_process protein targeting to chloroplast|GO:0045036|18193034|IDA  go_process protein targeting to chloroplast|GO:0045036|18193034|IMP  go_function protein binding|GO:0005515||ISS  product AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2); protein binding  note ANKYRIN REPEAT-CONTAINING PROTEIN 2 (AKR2); FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, response to cadmium ion, protein targeting to chloroplast, defense response to bacterium, incompatible interaction; LOCATED IN: integral to chloroplast outer membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: AKR2B (ANKYRIN REPEAT-CONTAINING 2B); protein binding / transcription regulator (TAIR:AT2G17390.1); Has 71932 Blast hits to 23219 proteins in 882 species: Archae - 94; Bacteria - 4306; Metazoa - 39416; Fungi - 3995; Plants - 2101; Viruses - 864; Other Eukaryotes - 21156 (source: NCBI BLink).  protein_id AT4G35450.2p  transcript_id AT4G35450.2  protein_id AT4G35450.2p  transcript_id AT4G35450.2  
At4g35450	chr4:016839862	0.0	W/16839862-16839898,16839995-16840128,16840210-16840422,16840517-16840665,16840756-16840918,16841048-16841140,16841422-16841561,16841660-16841759	AT4G35450.3  CDS  gene_syn AFT, AKR2, AKR2A, ANKYRIN REPEAT-CONTAINING PROTEIN 2, F15J1.20, F15J1_20  gene AKR2  function Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component integral to chloroplast outer membrane|GO:0031359|18193034|IDA  go_process protein folding|GO:0006457|18193034|IDA  go_process defense response to bacterium, incompatible interaction|GO:0009816|11862948|IMP  go_process protein targeting to chloroplast|GO:0045036|18193034|IDA  go_process protein targeting to chloroplast|GO:0045036|18193034|IMP  go_function protein binding|GO:0005515||ISS  product AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2); protein binding  note ANKYRIN REPEAT-CONTAINING PROTEIN 2 (AKR2); FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, response to cadmium ion, protein targeting to chloroplast, defense response to bacterium, incompatible interaction; LOCATED IN: integral to chloroplast outer membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: AKR2B (ANKYRIN REPEAT-CONTAINING 2B); protein binding / transcription regulator (TAIR:AT2G17390.1); Has 71932 Blast hits to 23219 proteins in 882 species: Archae - 94; Bacteria - 4306; Metazoa - 39416; Fungi - 3995; Plants - 2101; Viruses - 864; Other Eukaryotes - 21156 (source: NCBI BLink).  protein_id AT4G35450.3p  transcript_id AT4G35450.3  protein_id AT4G35450.3p  transcript_id AT4G35450.3  
At4g35450	chr4:016840072	0.0	W/16840072-16840128,16840210-16840422,16840517-16840665,16840756-16840918,16841048-16841140,16841422-16841561,16841660-16841759	AT4G35450.4  CDS  gene_syn AFT, AKR2, AKR2A, ANKYRIN REPEAT-CONTAINING PROTEIN 2, F15J1.20, F15J1_20  gene AKR2  function Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component integral to chloroplast outer membrane|GO:0031359|18193034|IDA  go_process protein folding|GO:0006457|18193034|IDA  go_process defense response to bacterium, incompatible interaction|GO:0009816|11862948|IMP  go_process protein targeting to chloroplast|GO:0045036|18193034|IDA  go_process protein targeting to chloroplast|GO:0045036|18193034|IMP  go_function protein binding|GO:0005515||ISS  product AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2); protein binding  note ANKYRIN REPEAT-CONTAINING PROTEIN 2 (AKR2); FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, response to cadmium ion, protein targeting to chloroplast, defense response to bacterium, incompatible interaction; LOCATED IN: integral to chloroplast outer membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: AKR2B (ANKYRIN REPEAT-CONTAINING 2B); protein binding / transcription regulator (TAIR:AT2G17390.1); Has 71810 Blast hits to 23204 proteins in 882 species: Archae - 94; Bacteria - 4310; Metazoa - 39295; Fungi - 3993; Plants - 2110; Viruses - 859; Other Eukaryotes - 21149 (source: NCBI BLink).  protein_id AT4G35450.4p  transcript_id AT4G35450.4  protein_id AT4G35450.4p  transcript_id AT4G35450.4  
At4g35460	chr4:016842218	0.0	W/16842218-16843274,16843670-16843740	AT4G35460.1  CDS  gene_syn ATNTRB, F15J1.30, F15J1_30, NADPH-DEPENDENT THIOREDOXIN REDUCTASE 1, NADPH-DEPENDENT THIOREDOXIN REDUCTASE B, NTR1, NTRB  gene NTRB  function NADPH-dependent thioredoxin reductase 1 (NTR1. Similar to E.coli NTR and has conserved NADPH binding domains.  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component mitochondrion|GO:0005739|15642341|IDA  go_component cytosol|GO:0005829|15642341|IDA  go_process pollen germination|GO:0009846|17586656|IGI  go_process cell growth|GO:0016049|17586656|IGI  go_process thioredoxin biosynthetic process|GO:0042964|17586656|IGI  go_process cell redox homeostasis|GO:0045454|17586656|IGI  go_process seed development|GO:0048316|17586656|IGI  go_function thioredoxin-disulfide reductase activity|GO:0004791|11717467|IDA  go_function thioredoxin-disulfide reductase activity|GO:0004791|8308900|IDA  go_function thioredoxin-disulfide reductase activity|GO:0004791|8308900|ISS  product NTRB (NADPH-DEPENDENT THIOREDOXIN REDUCTASE B); thioredoxin-disulfide reductase  note NADPH-DEPENDENT THIOREDOXIN REDUCTASE B (NTRB); FUNCTIONS IN: thioredoxin-disulfide reductase activity; INVOLVED IN: pollen germination, thioredoxin biosynthetic process, seed development, cell growth, cell redox homeostasis; LOCATED IN: cytosol, mitochondrion, chloroplast envelope; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), Pyridine nucleotide-disulphide oxidoreductase, class-II, active site (InterPro:IPR008255), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Adrenodoxin reductase (InterPro:IPR000759), Thioredoxin reductase (InterPro:IPR005982); BEST Arabidopsis thaliana protein match is: NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A); thioredoxin-disulfide reductase (TAIR:AT2G17420.1); Has 14385 Blast hits to 14383 proteins in 1660 species: Archae - 390; Bacteria - 8055; Metazoa - 113; Fungi - 220; Plants - 123; Viruses - 0; Other Eukaryotes - 5484 (source: NCBI BLink).  protein_id AT4G35460.1p  transcript_id AT4G35460.1  protein_id AT4G35460.1p  transcript_id AT4G35460.1  
At4g35470	chr4:016846531	0.0	W/16846531-16847125,16847303-16848216,16848308-16848448	AT4G35470.1  CDS  gene_syn F15J1.40, F15J1_40  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function protein binding|GO:0005515||IEA  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT2G17440.1); Has 68919 Blast hits to 26105 proteins in 926 species: Archae - 22; Bacteria - 6580; Metazoa - 30880; Fungi - 2044; Plants - 24938; Viruses - 13; Other Eukaryotes - 4442 (source: NCBI BLink).  protein_id AT4G35470.1p  transcript_id AT4G35470.1  protein_id AT4G35470.1p  transcript_id AT4G35470.1  
At4g35480	chr4:016852233	0.0	C/16852233-16852835	AT4G35480.1  CDS  gene_syn F15J1.50, F15J1_50, RHA3B, RING-H2 FINGER PROTEIN RHA3B  gene RHA3B  function Encodes a putative RING-H2 finger protein RHA3b.  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process response to chitin|GO:0010200|17722694|IEP  product RHA3B; protein binding / zinc ion binding  note RHA3B; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: RHA3A; protein binding / zinc ion binding (TAIR:AT2G17450.1); Has 6459 Blast hits to 6438 proteins in 210 species: Archae - 0; Bacteria - 0; Metazoa - 2261; Fungi - 460; Plants - 2728; Viruses - 34; Other Eukaryotes - 976 (source: NCBI BLink).  protein_id AT4G35480.1p  transcript_id AT4G35480.1  protein_id AT4G35480.1p  transcript_id AT4G35480.1  
At4g35490	chr4:016855918	0.0	W/16855918-16856385	AT4G35490.1  CDS  gene_syn F15J1.60, F15J1_60, MITOCHONDRIAL RIBOSOMAL PROTEIN L11, MRPL11  gene MRPL11  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product MRPL11 (MITOCHONDRIAL RIBOSOMAL PROTEIN L11); structural constituent of ribosome  note MITOCHONDRIAL RIBOSOMAL PROTEIN L11 (MRPL11); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, ribosome, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L11, bacterial-type (InterPro:IPR006519), Ribosomal protein L11 (InterPro:IPR000911); BEST Arabidopsis thaliana protein match is: PRPL11 (PLASTID RIBOSOMAL PROTEIN L11); structural constituent of ribosome (TAIR:AT1G32990.1); Has 5744 Blast hits to 5744 proteins in 1575 species: Archae - 191; Bacteria - 2960; Metazoa - 99; Fungi - 83; Plants - 65; Viruses - 0; Other Eukaryotes - 2346 (source: NCBI BLink).  protein_id AT4G35490.1p  transcript_id AT4G35490.1  protein_id AT4G35490.1p  transcript_id AT4G35490.1  
At4g35500	chr4:016857475	0.0	W/16857475-16857657,16858071-16858102,16858139-16858904,16858994-16859041,16859117-16859407	AT4G35500.2  CDS  gene_syn F8D20.10, F8D20_10  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G17530.1); Has 22291 Blast hits to 19210 proteins in 629 species: Archae - 2; Bacteria - 326; Metazoa - 10366; Fungi - 3761; Plants - 2915; Viruses - 46; Other Eukaryotes - 4875 (source: NCBI BLink).  protein_id AT4G35500.2p  transcript_id AT4G35500.2  protein_id AT4G35500.2p  transcript_id AT4G35500.2  
At4g35500	chr4:016857475	0.0	W/16857475-16857657,16858110-16858904,16858994-16859041,16859117-16859407	AT4G35500.1  CDS  gene_syn F8D20.10, F8D20_10  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G17530.1); Has 30339 Blast hits to 25313 proteins in 820 species: Archae - 2; Bacteria - 1007; Metazoa - 14174; Fungi - 4645; Plants - 3786; Viruses - 67; Other Eukaryotes - 6658 (source: NCBI BLink).  protein_id AT4G35500.1p  transcript_id AT4G35500.1  protein_id AT4G35500.1p  transcript_id AT4G35500.1  
At4g35510	chr4:016860712	0.0	C/16860712-16861713	AT4G35510.1  CDS  gene_syn F8D20.20, F8D20_20  product unknown protein  note unknown protein; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17540.3); Has 124 Blast hits to 121 proteins in 50 species: Archae - 0; Bacteria - 45; Metazoa - 19; Fungi - 8; Plants - 34; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT4G35510.1p  transcript_id AT4G35510.1  protein_id AT4G35510.1p  transcript_id AT4G35510.1  
At4g35519	chr4:016865248	0.0	C/16865248-16865370	AT4G35519.1  CDS  go_component mitochondrion|GO:0005739||IEA  product unknown protein  note unknown protein; LOCATED IN: mitochondrion; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G35519.1p  transcript_id AT4G35519.1  protein_id AT4G35519.1p  transcript_id AT4G35519.1  
At4g35520	chr4:016865488	0.0	W/16865488-16865613,16865694-16865745,16865835-16865882,16865964-16866118,16866208-16866265,16866441-16866498,16866611-16866703,16866770-16866898,16867221-16867377,16867457-16867526,16867607-16867687,16867783-16869120,16869228-16869422,16869648-16869721,16869823-16870023,16870179-16870223,16870330-16870383,16870502-16870608,16870728-16870776,16870879-16870938,16871021-16871093,16871208-16871293,16871369-16871527	AT4G35520.1  CDS  gene_syn ATMLH3, F8D20.30, F8D20_30, MLH3, MUTL PROTEIN HOMOLOG 3  gene MLH3  function DNA mismatch repair protein similar to MutL. Required for normal levels of meiotic crossovers  go_function ATP binding|GO:0005524||IEA  go_function mismatched DNA binding|GO:0030983||IEA  go_component chromosome|GO:0005694|16467846|IDA  go_process mismatch repair|GO:0006298||ISS  go_process reciprocal meiotic recombination|GO:0007131|16467846|IMP  go_function ATP binding|GO:0005524||ISS  product MLH3 (MUTL PROTEIN HOMOLOG 3); ATP binding / mismatched DNA binding  note MUTL PROTEIN HOMOLOG 3 (MLH3); FUNCTIONS IN: mismatched DNA binding, ATP binding; INVOLVED IN: mismatch repair, reciprocal meiotic recombination; LOCATED IN: chromosome; EXPRESSED IN: inflorescence; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein, C-terminal (InterPro:IPR013507), MutL, C-terminal, dimerisation (InterPro:IPR014790), DNA mismatch repair protein, N-terminal (InterPro:IPR014763), DNA mismatch repair protein (InterPro:IPR002099), DNA mismatch repair, conserved site (InterPro:IPR014762), ATP-binding region, ATPase-like (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: PMS1 (POSTMEIOTIC SEGREGATION 1); ATP binding / mismatched DNA binding (TAIR:AT4G02460.1); Has 5638 Blast hits to 4346 proteins in 1309 species: Archae - 77; Bacteria - 3367; Metazoa - 506; Fungi - 465; Plants - 74; Viruses - 0; Other Eukaryotes - 1149 (source: NCBI BLink).  protein_id AT4G35520.1p  transcript_id AT4G35520.1  protein_id AT4G35520.1p  transcript_id AT4G35520.1  
At4g35530	chr4:016873089	0.0	C/16873089-16873280,16872681-16872765,16872528-16872582,16872186-16872324,16871925-16872041	AT4G35530.1  CDS  gene_syn F8D20.40, F8D20_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product phosphatidylinositolglycan-related  note phosphatidylinositolglycan-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 63 Blast hits to 63 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 5; Plants - 17; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT4G35530.1p  transcript_id AT4G35530.1  protein_id AT4G35530.1p  transcript_id AT4G35530.1  
At4g35540	chr4:016873939	0.0	W/16873939-16875522	AT4G35540.1  CDS  gene_syn F8D20.50, F8D20_50  go_component transcription factor complex|GO:0005667||IEA  go_process transcription initiation|GO:0006352||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function transcription regulator activity|GO:0030528||IEA  product transcription regulator/ zinc ion binding  note transcription regulator/ zinc ion binding; FUNCTIONS IN: transcription regulator activity, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription, transcription initiation; LOCATED IN: transcription factor complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Cyclin-like (InterPro:IPR011028), Zinc finger, TFIIB-type (InterPro:IPR013137); Has 183 Blast hits to 182 proteins in 84 species: Archae - 47; Bacteria - 0; Metazoa - 38; Fungi - 41; Plants - 17; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT4G35540.1p  transcript_id AT4G35540.1  protein_id AT4G35540.1p  transcript_id AT4G35540.1  
At4g35550	chr4:016876945	0.0	C/16876945-16877167,16876023-16876520,16875814-16875899	AT4G35550.1  CDS  gene_syn ATWOX13, F8D20.60, F8D20_60, HB-4, WOX13, WUSCHEL-RELATED HOMEOBOX 13  gene WOX13  function Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. WOX13 is the only family member that does not contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product WOX13 (WUSCHEL-RELATED HOMEOBOX 13); DNA binding / transcription factor  note WUSCHEL-RELATED HOMEOBOX 13 (WOX13); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: WOX14 (WUSCHEL RELATED HOMEOBOX 14); DNA binding / transcription factor (TAIR:AT1G20700.1); Has 543 Blast hits to 543 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 233; Fungi - 12; Plants - 292; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G35550.1p  transcript_id AT4G35550.1  protein_id AT4G35550.1p  transcript_id AT4G35550.1  
At4g35560	chr4:016881562	0.0	W/16881562-16881600,16882216-16882349,16882438-16882522,16882631-16882684,16882763-16882854,16882948-16883051,16883141-16883213,16883288-16883972,16884044-16884241,16884324-16884422,16884510-16884573,16884657-16884784,16884864-16885110,16885191-16885455,16885527-16885650,16885730-16885788,16885854-16885944,16886025-16886217,16886304-16886548,16886622-16886681,16886768-16886878	AT4G35560.1  CDS  gene_syn F8D20.70, F8D20_70  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943), Lethal giant larvae (Lgl) like, C-terminal (InterPro:IPR013905); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G05570.1); Has 562 Blast hits to 546 proteins in 129 species: Archae - 0; Bacteria - 20; Metazoa - 305; Fungi - 89; Plants - 43; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT4G35560.1p  transcript_id AT4G35560.1  protein_id AT4G35560.1p  transcript_id AT4G35560.1  
At4g35570	chr4:016888138	0.0	C/16888138-16888184,16887969-16888055,16887811-16887868,16887666-16887710,16887509-16887589,16887363-16887422	AT4G35570.1  CDS  gene_syn F8D20.80, F8D20_80, HIGH MOBILITY GROUP B 5, HMGB5, HMGD, NFD05, NFD5, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR 5  gene HMGB5  function Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Cannot be phosphorylated by CK2alpha.  go_component chromatin|GO:0000785|12653554|TAS  go_component nucleus|GO:0005634|17114349|IDA  go_component cytosol|GO:0005829|17114349|IDA  go_process chromatin assembly or disassembly|GO:0006333|12653554|TAS  go_function DNA binding|GO:0003677|9461286|IDA  go_function DNA binding|GO:0003677|9461286|ISS  go_function chromatin binding|GO:0003682|12653554|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function structural constituent of chromatin|GO:0030527|12653554|TAS  product HMGB5 (HIGH MOBILITY GROUP B 5); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor  note HIGH MOBILITY GROUP B 5 (HMGB5); FUNCTIONS IN: chromatin binding, transcription factor activity, structural constituent of chromatin, DNA binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin, cytosol, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: HMGB4 (HIGH MOBILITY GROUP B 4); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor (TAIR:AT2G17560.3); Has 2107 Blast hits to 1964 proteins in 275 species: Archae - 0; Bacteria - 0; Metazoa - 1387; Fungi - 187; Plants - 320; Viruses - 0; Other Eukaryotes - 213 (source: NCBI BLink).  protein_id AT4G35570.1p  transcript_id AT4G35570.1  protein_id AT4G35570.1p  transcript_id AT4G35570.1  
At4g35580	chr4:016890579	0.0	C/16890579-16890744,16889952-16890460,16889528-16889875,16889100-16889375,16888886-16889005,16888534-16888719	AT4G35580.2  CDS  gene_syn F8D20.90, F8D20_90, NAC transcription factor-like 9, NTL9  gene NTL9  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product NTL9 (NAC transcription factor-like 9); transcription factor  note NAC transcription factor-like 9 (NTL9); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: no apical meristem (NAM) family protein (TAIR:AT1G33060.2); Has 1627 Blast hits to 1625 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1627; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G35580.2p  transcript_id AT4G35580.2  protein_id AT4G35580.2p  transcript_id AT4G35580.2  
At4g35580	chr4:016890579	0.0	C/16890579-16890744,16889952-16890460,16889528-16889875,16889100-16889375,16888886-16889005,16888581-16888700	AT4G35580.1  CDS  gene_syn F8D20.90, F8D20_90, NAC transcription factor-like 9, NTL9  gene NTL9  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product NTL9 (NAC transcription factor-like 9); transcription factor  note NAC transcription factor-like 9 (NTL9); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: no apical meristem (NAM) family protein (TAIR:AT1G33060.2); Has 1627 Blast hits to 1625 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1627; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G35580.1p  transcript_id AT4G35580.1  protein_id AT4G35580.1p  transcript_id AT4G35580.1  
At4g35589	chr4:016892766	0.0	W/16892766-16892903	AT4G35589.1  CDS  go_component mitochondrion|GO:0005739||IEA  product unknown protein  note unknown protein; LOCATED IN: mitochondrion; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G35589.1p  transcript_id AT4G35589.1  protein_id AT4G35589.1p  transcript_id AT4G35589.1  
At4g35590	chr4:016892909	0.0	W/16892909-16892922,16893007-16893161,16893263-16893491,16893924-16894189,16894333-16894559,16894644-16894865	AT4G35590.1  CDS  gene_syn F8D20.100, F8D20_100  go_component endomembrane system|GO:0012505||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product RWP-RK domain-containing protein  note RWP-RK domain-containing protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: RWP-RK domain-containing protein (TAIR:AT1G18790.1); Has 412 Blast hits to 392 proteins in 69 species: Archae - 5; Bacteria - 20; Metazoa - 34; Fungi - 7; Plants - 227; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT4G35590.1p  transcript_id AT4G35590.1  protein_id AT4G35590.1p  transcript_id AT4G35590.1  
At4g35600	chr4:016896448	0.0	W/16896448-16896511,16896624-16896973,16897578-16897713,16897815-16897948,16898039-16898162,16898263-16898714	AT4G35600.1  CDS  gene_syn CONNEXIN 32, F8D20.110, F8D20_110  gene CONNEXIN 32  function plant-type connexin (gap junction-type protein), a component of plasmodesmata  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product CONNEXIN 32; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note CONNEXIN 32; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT2G17220.2); Has 81624 Blast hits to 80528 proteins in 2750 species: Archae - 46; Bacteria - 7272; Metazoa - 35944; Fungi - 6309; Plants - 18109; Viruses - 337; Other Eukaryotes - 13607 (source: NCBI BLink).  protein_id AT4G35600.1p  transcript_id AT4G35600.1  protein_id AT4G35600.1p  transcript_id AT4G35600.1  
At4g35610	chr4:016899410	0.0	C/16899410-16900225	AT4G35610.1  CDS  gene_syn F8D20.120, F8D20_120  go_component nucleus|GO:0005634|14617066|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT4G35700.1); Has 153 Blast hits to 151 proteins in 39 species: Archae - 0; Bacteria - 8; Metazoa - 39; Fungi - 8; Plants - 86; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT4G35610.1p  transcript_id AT4G35610.1  protein_id AT4G35610.1p  transcript_id AT4G35610.1  
At4g35620	chr4:016901744	0.0	W/16901744-16901807,16901899-16902034,16902119-16902178,16902256-16902409,16902492-16902629,16902719-16902808,16902887-16903108,16903194-16903292,16903371-16903549,16903619-16903766	AT4G35620.1  CDS  gene_syn CYCB2;2, Cyclin B2;2, F8D20.130, F8D20_130  gene CYCB2;2  go_component nucleus|GO:0005634||IEA  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase regulator activity|GO:0016538||ISS  product CYCB2;2 (Cyclin B2;2); cyclin-dependent protein kinase regulator  note Cyclin B2;2 (CYCB2;2); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCB2;1 (Cyclin B2;1); cyclin-dependent protein kinase regulator (TAIR:AT2G17620.1); Has 3470 Blast hits to 3468 proteins in 305 species: Archae - 0; Bacteria - 2; Metazoa - 1786; Fungi - 380; Plants - 747; Viruses - 35; Other Eukaryotes - 520 (source: NCBI BLink).  protein_id AT4G35620.1p  transcript_id AT4G35620.1  protein_id AT4G35620.1p  transcript_id AT4G35620.1  
At4g35630	chr4:016904205	0.0	W/16904205-16905497	AT4G35630.1  CDS  gene_syn PHOSPHOSERINE AMINOTRANSFERASE, PSAT  gene PSAT  function Encodes a phosphoserine aminotransferase which is involved in serine biosynthesis in the chloroplast which operates via the phosphorylated pathway.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast|GO:0009507|9881164|IDA  go_process L-serine biosynthetic process|GO:0006564|9881164|TAS  go_process L-serine biosynthetic process|GO:0006564||ISS  go_function O-phospho-L-serine:2-oxoglutarate aminotransferase activity|GO:0004648|9881164|IDA  go_function O-phospho-L-serine:2-oxoglutarate aminotransferase activity|GO:0004648|9881164|IGI  go_function O-phospho-L-serine:2-oxoglutarate aminotransferase activity|GO:0004648||ISS  product PSAT; O-phospho-L-serine:2-oxoglutarate aminotransferase  note PSAT; FUNCTIONS IN: O-phospho-L-serine:2-oxoglutarate aminotransferase activity; INVOLVED IN: L-serine biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase, class V/Cysteine desulfurase (InterPro:IPR000192), Phosphoserine aminotransferase (InterPro:IPR003248), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: phosphoserine aminotransferase, putative (TAIR:AT2G17630.1); Has 3433 Blast hits to 3432 proteins in 1000 species: Archae - 32; Bacteria - 1861; Metazoa - 150; Fungi - 90; Plants - 37; Viruses - 0; Other Eukaryotes - 1263 (source: NCBI BLink).  protein_id AT4G35630.1p  transcript_id AT4G35630.1  protein_id AT4G35630.1p  transcript_id AT4G35630.1  
At4g35640	chr4:016907726	0.0	C/16907726-16907977,16907143-16907340,16906980-16907039,16906767-16906862,16906653-16906677,16906470-16906564,16906216-16906382,16906045-16906118,16905892-16905951,16905755-16905795	AT4G35640.1  CDS  gene_syn ATSERAT3;2, F8D20.150, F8D20_150, Serine acetyltransferase 3;2  gene ATSERAT3;2  function Encodes a cytosolic serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system. Expression is induced in both roots and shoots under sulfur-starved conditions.  go_component cytosol|GO:0005829|15579666|IDA  go_process sulfate assimilation|GO:0000103|15579666|TAS  go_function serine O-acetyltransferase activity|GO:0009001|15579666|IDA  go_function serine O-acetyltransferase activity|GO:0009001|15579666|IGI  go_function acetyltransferase activity|GO:0016407||ISS  product ATSERAT3;2 (Serine acetyltransferase 3;2); acetyltransferase/ serine O-acetyltransferase  note Serine acetyltransferase 3;2 (ATSERAT3;2); FUNCTIONS IN: acetyltransferase activity, serine O-acetyltransferase activity; INVOLVED IN: sulfate assimilation; LOCATED IN: cytosol; EXPRESSED IN: root vascular system; CONTAINS InterPro DOMAIN/s: Hexapeptide transferase, conserved site (InterPro:IPR018357), Serine O-acetyltransferase (InterPro:IPR005881), Trimeric LpxA-like (InterPro:IPR011004), Bacterial transferase hexapeptide repeat (InterPro:IPR001451), Serine acetyltransferase, N-terminal (InterPro:IPR010493); BEST Arabidopsis thaliana protein match is: ATSERAT3;1; acetyltransferase/ serine O-acetyltransferase (TAIR:AT2G17640.1); Has 14238 Blast hits to 14233 proteins in 1397 species: Archae - 236; Bacteria - 8758; Metazoa - 4; Fungi - 160; Plants - 178; Viruses - 0; Other Eukaryotes - 4902 (source: NCBI BLink).  protein_id AT4G35640.1p  transcript_id AT4G35640.1  protein_id AT4G35640.1p  transcript_id AT4G35640.1  
At4g35650	chr4:016908584	0.0	W/16908584-16909096,16909183-16909422,16909546-16909624,16909699-16909973	AT4G35650.1  CDS  gene_syn F8D20.160, F8D20_160  go_process tricarboxylic acid cycle|GO:0006099||IEA  go_process metabolic process|GO:0008152||IEA  go_function isocitrate dehydrogenase (NAD+) activity|GO:0004449||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process metabolic process|GO:0008152||ISS  go_function isocitrate dehydrogenase (NAD+) activity|GO:0004449||ISS  product isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative  note isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative; FUNCTIONS IN: isocitrate dehydrogenase (NAD+) activity, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; INVOLVED IN: tricarboxylic acid cycle, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: sperm cell, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804), Isocitrate dehydrogenase NAD-dependent, mitochondrial (InterPro:IPR004434); BEST Arabidopsis thaliana protein match is: IDH1 (ISOCITRATE DEHYDROGENASE 1); isocitrate dehydrogenase (NAD+)/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor (TAIR:AT4G35260.1); Has 11521 Blast hits to 11406 proteins in 1601 species: Archae - 250; Bacteria - 5649; Metazoa - 577; Fungi - 582; Plants - 152; Viruses - 0; Other Eukaryotes - 4311 (source: NCBI BLink).  protein_id AT4G35650.1p  transcript_id AT4G35650.1  protein_id AT4G35650.1p  transcript_id AT4G35650.1  
At4g35655	chr4:016910755	0.0	W/16910755-16910961	AT4G35655.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Defence response, Rin4 (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: nitrate-responsive NOI protein, putative (TAIR:AT2G17660.1); Has 135 Blast hits to 134 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G35655.1p  transcript_id AT4G35655.1  protein_id AT4G35655.1p  transcript_id AT4G35655.1  
At4g35660	chr4:016912792	0.0	W/16912792-16913658	AT4G35660.1  CDS  gene_syn F8D20.170, F8D20_170  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF241, plant (InterPro:IPR004320); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35680.1); Has 264 Blast hits to 260 proteins in 18 species: Archae - 0; Bacteria - 2; Metazoa - 25; Fungi - 0; Plants - 235; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G35660.1p  transcript_id AT4G35660.1  protein_id AT4G35660.1p  transcript_id AT4G35660.1  
At4g35670	chr4:016914996	0.0	W/16914996-16914998,16915084-16915203,16915332-16915469,16915604-16915747,16915845-16915874,16915979-16916186,16916380-16916461,16916538-16916646,16916740-16916850,16916962-16917201	AT4G35670.1  CDS  gene_syn F8D20.180, F8D20_180  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, flower, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Parallel beta-helix repeat (InterPro:IPR006626), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT5G27530.1); Has 2502 Blast hits to 2486 proteins in 314 species: Archae - 2; Bacteria - 510; Metazoa - 8; Fungi - 992; Plants - 899; Viruses - 4; Other Eukaryotes - 87 (source: NCBI BLink).  protein_id AT4G35670.1p  transcript_id AT4G35670.1  protein_id AT4G35670.1p  transcript_id AT4G35670.1  
At4g35680	chr4:016917938	0.0	W/16917938-16918862,16919090-16919378,16919452-16919749	AT4G35680.1  CDS  gene_syn F8D20.190, F8D20_190  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF241, plant (InterPro:IPR004320); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01590.2); Has 1444 Blast hits to 1173 proteins in 135 species: Archae - 0; Bacteria - 50; Metazoa - 350; Fungi - 154; Plants - 286; Viruses - 49; Other Eukaryotes - 555 (source: NCBI BLink).  protein_id AT4G35680.1p  transcript_id AT4G35680.1  protein_id AT4G35680.1p  transcript_id AT4G35680.1  
At4g35690	chr4:016921886	0.0	W/16921886-16922740	AT4G35690.1  CDS  gene_syn F8D20.200, F8D20_200  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF241, plant (InterPro:IPR004320); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35710.1); Has 246 Blast hits to 242 proteins in 11 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 4; Plants - 241; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G35690.1p  transcript_id AT4G35690.1  protein_id AT4G35690.1p  transcript_id AT4G35690.1  
At4g35700	chr4:016923351	0.0	W/16923351-16924178	AT4G35700.1  CDS  gene_syn F8D20.210, F8D20_210  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT4G35610.1); Has 44 Blast hits to 42 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G35700.1p  transcript_id AT4G35700.1  protein_id AT4G35700.1p  transcript_id AT4G35700.1  
At4g35710	chr4:016925301	0.0	W/16925301-16926152	AT4G35710.1  CDS  gene_syn F8D20.220, F8D20_220  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell, pollen tube; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF241, plant (InterPro:IPR004320); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35690.1); Has 235 Blast hits to 231 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 235; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G35710.1p  transcript_id AT4G35710.1  protein_id AT4G35710.1p  transcript_id AT4G35710.1  
At4g35720	chr4:016927972	0.0	W/16927972-16928949	AT4G35720.1  CDS  gene_syn F8D20.230, F8D20_230  product unknown protein  note unknown protein; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF241, plant (InterPro:IPR004320); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35690.1); Has 230 Blast hits to 226 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 226; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G35720.1p  transcript_id AT4G35720.1  protein_id AT4G35720.1p  transcript_id AT4G35720.1  
At4g35725	chr4:016930434	0.0	C/16930434-16930485,16930028-16930347	AT4G35725.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, sepal; EXPRESSED DURING: 4 anthesis, C globular stage; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G35725.1p  transcript_id AT4G35725.1  protein_id AT4G35725.1p  transcript_id AT4G35725.1  
At4g35730	chr4:016931111	0.0	W/16931111-16931202,16931494-16931626,16931713-16931816,16931908-16932079,16932185-16932325,16932406-16932497,16932575-16933241	AT4G35730.1  CDS  gene_syn F8D20.240, F8D20_240  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34220.2); Has 510 Blast hits to 497 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 187; Fungi - 123; Plants - 153; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT4G35730.1p  transcript_id AT4G35730.1  protein_id AT4G35730.1p  transcript_id AT4G35730.1  
At4g35731	chr4:016933547	0.0	W/16933547-16933949	AT4G35731.1  pseudogenic_transcript  pseudo  function Pseudogene of AT2G26160  
At4g35733	chr4:016934426	0.0	W/16934426-16935502	AT4G35733.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box protein-related / C-type lectin-related (TAIR:AT1G44080.1); Has 92 Blast hits to 87 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G35733.1p  transcript_id AT4G35733.1  protein_id AT4G35733.1p  transcript_id AT4G35733.1  
At4g35740	chr4:016936233	0.0	W/16936233-16936383,16936468-16936575,16936676-16936683,16936776-16936859,16937072-16937212,16937314-16937348,16937424-16937507,16937583-16937671,16937830-16937982,16938064-16938160,16938287-16938290,16938377-16938526,16938617-16938688,16938757-16938822,16938897-16939024,16939103-16939197,16939301-16939419,16939513-16939622,16939725-16940172	AT4G35740.1  CDS  gene_syn F8D20.250, F8D20_250, RecQl3  gene RecQl3  go_process DNA recombination|GO:0006310||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_component cellular_component|GO:0005575||ND  go_function ATP binding|GO:0005524||ISS  go_function ATP-dependent helicase activity|GO:0008026||ISS  product RecQl3; ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding  note RecQl3; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: DNA recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal region (InterPro:IPR018329), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RECQL2 (ARABIDOPSIS RECQ HELICASE L2); 3 -5  DNA helicase/ ATP-dependent helicase/ four-way junction helicase/ protein binding (TAIR:AT1G31360.1); Has 20515 Blast hits to 20463 proteins in 1611 species: Archae - 344; Bacteria - 10151; Metazoa - 3213; Fungi - 2195; Plants - 965; Viruses - 10; Other Eukaryotes - 3637 (source: NCBI BLink).  protein_id AT4G35740.1p  transcript_id AT4G35740.1  protein_id AT4G35740.1p  transcript_id AT4G35740.1  
At4g35740	chr4:016936788	0.0	W/16936788-16936859,16937072-16937212,16937314-16937348,16937424-16937507,16937583-16937671,16937830-16937982,16938064-16938160,16938287-16938290,16938377-16938526,16938617-16938688,16938757-16938822,16938897-16939024,16939103-16939197,16939301-16939419,16939513-16939622,16939725-16940172	AT4G35740.2  CDS  gene_syn F8D20.250, F8D20_250, RecQl3  gene RecQl3  go_process DNA recombination|GO:0006310||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_component cellular_component|GO:0005575||ND  go_function ATP binding|GO:0005524||ISS  go_function ATP-dependent helicase activity|GO:0008026||ISS  product RecQl3; ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding  note RecQl3; FUNCTIONS IN: helicase activity, ATP binding, nucleic acid binding, ATP-dependent helicase activity; INVOLVED IN: DNA recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal region (InterPro:IPR018329), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RECQL2 (ARABIDOPSIS RECQ HELICASE L2); 3 -5  DNA helicase/ ATP-dependent helicase/ four-way junction helicase/ protein binding (TAIR:AT1G31360.2); Has 17892 Blast hits to 17848 proteins in 1552 species: Archae - 194; Bacteria - 8960; Metazoa - 2771; Fungi - 1882; Plants - 840; Viruses - 10; Other Eukaryotes - 3235 (source: NCBI BLink).  protein_id AT4G35740.2p  transcript_id AT4G35740.2  protein_id AT4G35740.2p  transcript_id AT4G35740.2  
At4g35750	chr4:016941551	0.0	C/16941551-16941674,16941200-16941464,16940865-16941084	AT4G35750.1  CDS  gene_syn F4B14.4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Rho-GTPase-activating protein-related  note Rho-GTPase-activating protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G10210.1); Has 313 Blast hits to 313 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 237; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT4G35750.1p  transcript_id AT4G35750.1  protein_id AT4G35750.1p  transcript_id AT4G35750.1  
At4g35760	chr4:016944524	0.0	C/16944524-16944622,16944162-16944447,16943625-16943881,16943416-16943528,16943118-16943265,16942896-16943033,16942733-16942822	AT4G35760.1  CDS  gene_syn F4B14.2  go_component chloroplast|GO:0009507|18431481|IDA  product unknown protein  note LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vitamin K epoxide reductase (InterPro:IPR012932), Thioredoxin-like fold (InterPro:IPR012336); Has 447 Blast hits to 447 proteins in 86 species: Archae - 0; Bacteria - 179; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 237 (source: NCBI BLink).  protein_id AT4G35760.1p  transcript_id AT4G35760.1  protein_id AT4G35760.1p  transcript_id AT4G35760.1  
At4g35770	chr4:016945073	0.0	W/16945073-16945224,16945317-16945513,16945604-16945674,16945775-16945828,16945909-16945983	AT4G35770.1  CDS  gene_syn ARABIDOPSIS THALIANA SENESCENCE 1, ATSEN1, DARK INDUCIBLE 1, DIN1, F4B14.3, SEN1, SENESCENCE 1, SENESCENCE ASSOCIATED GENE 1  gene SEN1  function Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.  go_component chloroplast|GO:0009507||IEA  go_process response to oxidative stress|GO:0006979|15295076|IEP  go_process aging|GO:0007568|8624406|IEP  go_process aging|GO:0007568||ISS  go_process response to light stimulus|GO:0009416|11080291|IEP  go_process response to wounding|GO:0009611|16021335|IEP  go_process response to sucrose stimulus|GO:0009744|11080291|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16021335|IEP  go_function molecular_function|GO:0003674||ND  product SEN1 (SENESCENCE 1)  note SENESCENCE 1 (SEN1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 6 processes; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: STR16 (SULFURTRANSFERASE PROTEIN 16) (TAIR:AT5G66040.1); Has 1069 Blast hits to 1069 proteins in 323 species: Archae - 13; Bacteria - 725; Metazoa - 3; Fungi - 8; Plants - 113; Viruses - 0; Other Eukaryotes - 207 (source: NCBI BLink).  protein_id AT4G35770.1p  transcript_id AT4G35770.1  protein_id AT4G35770.1p  transcript_id AT4G35770.1  
At4g35770	chr4:016945073	0.0	W/16945073-16945224,16945317-16945513,16945604-16945674,16945775-16945832,16945909-16945964	AT4G35770.3  CDS  gene_syn ARABIDOPSIS THALIANA SENESCENCE 1, ATSEN1, DARK INDUCIBLE 1, DIN1, F4B14.3, SEN1, SENESCENCE 1, SENESCENCE ASSOCIATED GENE 1  gene SEN1  function Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.  go_component chloroplast|GO:0009507||IEA  go_process response to oxidative stress|GO:0006979|15295076|IEP  go_process aging|GO:0007568|8624406|IEP  go_process aging|GO:0007568||ISS  go_process response to light stimulus|GO:0009416|11080291|IEP  go_process response to wounding|GO:0009611|16021335|IEP  go_process response to sucrose stimulus|GO:0009744|11080291|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16021335|IEP  go_function molecular_function|GO:0003674||ND  product SEN1 (SENESCENCE 1)  note SENESCENCE 1 (SEN1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 6 processes; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: STR16 (SULFURTRANSFERASE PROTEIN 16) (TAIR:AT5G66040.1); Has 179 Blast hits to 179 proteins in 64 species: Archae - 0; Bacteria - 85; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G35770.3p  transcript_id AT4G35770.3  protein_id AT4G35770.3p  transcript_id AT4G35770.3  
At4g35770	chr4:016945073	0.0	W/16945073-16945224,16945317-16945513,16945604-16945674,16945775-16945840	AT4G35770.2  CDS  gene_syn ARABIDOPSIS THALIANA SENESCENCE 1, ATSEN1, DARK INDUCIBLE 1, DIN1, F4B14.3, SEN1, SENESCENCE 1, SENESCENCE ASSOCIATED GENE 1  gene SEN1  function Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.  go_component chloroplast|GO:0009507||IEA  go_process response to oxidative stress|GO:0006979|15295076|IEP  go_process aging|GO:0007568|8624406|IEP  go_process aging|GO:0007568||ISS  go_process response to light stimulus|GO:0009416|11080291|IEP  go_process response to wounding|GO:0009611|16021335|IEP  go_process response to sucrose stimulus|GO:0009744|11080291|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16021335|IEP  go_function molecular_function|GO:0003674||ND  product SEN1 (SENESCENCE 1)  note SENESCENCE 1 (SEN1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 6 processes; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: STR16 (SULFURTRANSFERASE PROTEIN 16) (TAIR:AT5G66040.1); Has 178 Blast hits to 178 proteins in 64 species: Archae - 0; Bacteria - 85; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G35770.2p  transcript_id AT4G35770.2  protein_id AT4G35770.2p  transcript_id AT4G35770.2  
At4g35780	chr4:016950200	0.0	C/16950200-16950405,16950012-16950126,16949731-16949936,16949515-16949569,16949179-16949289,16948907-16948957,16948508-16948680,16948320-16948427,16948054-16948127,16947668-16947843,16947412-16947507,16947262-16947342,16947095-16947148,16946875-16947009,16946729-16946800	AT4G35780.1  CDS  gene_syn F4B14.1  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process metabolic process|GO:0008152||IEA  go_function protein kinase activity|GO:0004672||ISS  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, protein kinase activity; INVOLVED IN: protein amino acid phosphorylation, metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Amino acid-binding ACT (InterPro:IPR002912), Tyrosine protein kinase (InterPro:IPR001245), ATMRK serine/threonine protein kinase-like (InterPro:IPR015783), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G17700.1); Has 96534 Blast hits to 94806 proteins in 3572 species: Archae - 70; Bacteria - 8063; Metazoa - 43456; Fungi - 7958; Plants - 19255; Viruses - 472; Other Eukaryotes - 17260 (source: NCBI BLink).  protein_id AT4G35780.1p  transcript_id AT4G35780.1  protein_id AT4G35780.1p  transcript_id AT4G35780.1  
At4g35783	chr4:016952612	0.0	W/16952612-16952800	AT4G35783.1  CDS  gene_syn DEVIL 17, DVL17, ROTUNDIFOLIA LIKE 6, RTFL6  gene RTFL6  go_component cellular_component|GO:0005575||ND  go_process shoot development|GO:0048367|14871303|ISS  go_function molecular_function|GO:0003674||ND  product RTFL6 (ROTUNDIFOLIA LIKE 6)  note ROTUNDIFOLIA LIKE 6 (RTFL6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: shoot development; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); BEST Arabidopsis thaliana protein match is: RTFL5 (ROTUNDIFOLIA LIKE 5) (TAIR:AT5G59510.1); Has 68 Blast hits to 68 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G35783.1p  transcript_id AT4G35783.1  protein_id AT4G35783.1p  transcript_id AT4G35783.1  
At4g35785	chr4:016955125	0.0	C/16955125-16955127,16955028-16955050,16954565-16954705,16954429-16954452,16954237-16954333,16953970-16954119,16953523-16953592,16953211-16953419	AT4G35785.1  CDS  go_component chloroplast|GO:0009507||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component ribonucleoprotein complex|GO:0030529||ISS  go_process biological_process|GO:0008150||ND  product nucleic acid binding / nucleotide binding  note nucleic acid binding / nucleotide binding; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: ribonucleoprotein complex, chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: transformer serine/arginine-rich ribonucleoprotein, putative (TAIR:AT1G07350.1); Has 14068 Blast hits to 8860 proteins in 445 species: Archae - 0; Bacteria - 388; Metazoa - 10197; Fungi - 822; Plants - 1047; Viruses - 211; Other Eukaryotes - 1403 (source: NCBI BLink).  protein_id AT4G35785.1p  transcript_id AT4G35785.1  protein_id AT4G35785.1p  transcript_id AT4G35785.1  
At4g35785	chr4:016955125	0.0	C/16955125-16955127,16955028-16955050,16954565-16954705,16954429-16954452,16954237-16954336,16953970-16954119,16953523-16953592,16953211-16953419	AT4G35785.2  CDS  go_component chloroplast|GO:0009507||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component ribonucleoprotein complex|GO:0030529||ISS  go_process biological_process|GO:0008150||ND  product nucleic acid binding / nucleotide binding  note nucleic acid binding / nucleotide binding; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: ribonucleoprotein complex, chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: transformer serine/arginine-rich ribonucleoprotein, putative (TAIR:AT1G07350.1); Has 15256 Blast hits to 9223 proteins in 448 species: Archae - 0; Bacteria - 390; Metazoa - 11188; Fungi - 900; Plants - 1084; Viruses - 218; Other Eukaryotes - 1476 (source: NCBI BLink).  protein_id AT4G35785.2p  transcript_id AT4G35785.2  protein_id AT4G35785.2p  transcript_id AT4G35785.2  
At4g35785	chr4:016955125	0.0	C/16955125-16955127,16955028-16955050,16954565-16954705,16954429-16954452,16954237-16954336,16953970-16954119,16953708-16953890	AT4G35785.3  CDS  go_component chloroplast|GO:0009507||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component ribonucleoprotein complex|GO:0030529||ISS  go_process biological_process|GO:0008150||ND  product nucleic acid binding / nucleotide binding  note nucleic acid binding / nucleotide binding; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: ribonucleoprotein complex, chloroplast; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: transformer serine/arginine-rich ribonucleoprotein, putative (TAIR:AT1G07350.2).  protein_id AT4G35785.3p  transcript_id AT4G35785.3  protein_id AT4G35785.3p  transcript_id AT4G35785.3  
At4g35790	chr4:016958934	0.0	C/16958934-16959875,16958624-16958773,16958152-16958346,16957756-16958061,16957598-16957666,16957309-16957456,16956952-16957100,16956687-16956836,16956347-16956547,16955774-16956070	AT4G35790.1  CDS  gene_syn ATPLDDELTA, F4B14.60, F4B14_60, PHOSPHOLIPASE D, PHOSPHOLIPASE D DELTA, PLDDELTA  gene ATPLDDELTA  function Encodes a protein with phospholipase D activity. Involved in phospolipase metabolism. Mutants are affected in hydrogen peroxide mediated cell death.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component plasma membrane|GO:0005886|14508007|TAS  go_component plasma membrane|GO:0005886|16618929|IDA  go_component microtubule cytoskeleton|GO:0015630|14508007|TAS  go_process response to cold|GO:0009409|14535880|IEP  go_process response to cold|GO:0009409|15004566|IMP  go_process response to water deprivation|GO:0009414|11489173|IEP  go_process programmed cell death|GO:0012501|14508007|IMP  go_process hyperosmotic salinity response|GO:0042538|11489173|IEP  go_process phosphatidic acid metabolic process|GO:0046473|11489173|IMP  go_function phospholipase D activity|GO:0004630|12397060|IDA  go_function phospholipase D activity|GO:0004630|14508007|IMP  go_function phospholipase D activity|GO:0004630||ISS  product ATPLDDELTA; phospholipase D  note ATPLDDELTA; FUNCTIONS IN: phospholipase D activity; INVOLVED IN: response to water deprivation, phosphatidic acid metabolic process, hyperosmotic salinity response, response to cold, programmed cell death; LOCATED IN: microtubule cytoskeleton, plasma membrane, vacuole, membrane; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), Phospholipase D (InterPro:IPR015679), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phospholipase D, plant (InterPro:IPR011402), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: PLDBETA1 (PHOSPHOLIPASE D BETA 1); phospholipase D (TAIR:AT2G42010.1); Has 1626 Blast hits to 1312 proteins in 298 species: Archae - 0; Bacteria - 327; Metazoa - 414; Fungi - 298; Plants - 462; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).  protein_id AT4G35790.1p  transcript_id AT4G35790.1  protein_id AT4G35790.1p  transcript_id AT4G35790.1  
At4g35790	chr4:016958934	0.0	C/16958934-16959875,16958657-16958773,16958152-16958346,16957756-16958061,16957598-16957666,16957309-16957456,16956952-16957100,16956681-16956836	AT4G35790.3  CDS  gene_syn ATPLDDELTA, F4B14.60, F4B14_60, PHOSPHOLIPASE D, PHOSPHOLIPASE D DELTA, PLDDELTA  gene ATPLDDELTA  function Encodes a protein with phospholipase D activity. Involved in phospolipase metabolism. Mutants are affected in hydrogen peroxide mediated cell death.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component plasma membrane|GO:0005886|14508007|TAS  go_component plasma membrane|GO:0005886|16618929|IDA  go_component microtubule cytoskeleton|GO:0015630|14508007|TAS  go_process response to cold|GO:0009409|14535880|IEP  go_process response to cold|GO:0009409|15004566|IMP  go_process response to water deprivation|GO:0009414|11489173|IEP  go_process programmed cell death|GO:0012501|14508007|IMP  go_process hyperosmotic salinity response|GO:0042538|11489173|IEP  go_process phosphatidic acid metabolic process|GO:0046473|11489173|IMP  go_function phospholipase D activity|GO:0004630|12397060|IDA  go_function phospholipase D activity|GO:0004630|14508007|IMP  go_function phospholipase D activity|GO:0004630||ISS  product ATPLDDELTA; phospholipase D  note ATPLDDELTA; FUNCTIONS IN: phospholipase D activity; INVOLVED IN: response to water deprivation, phosphatidic acid metabolic process, hyperosmotic salinity response, response to cold, programmed cell death; LOCATED IN: microtubule cytoskeleton, plasma membrane, vacuole, membrane; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phospholipase D (InterPro:IPR015679), Phospholipase D, plant (InterPro:IPR011402), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: PLDBETA1 (PHOSPHOLIPASE D BETA 1); phospholipase D (TAIR:AT2G42010.1); Has 1448 Blast hits to 1258 proteins in 282 species: Archae - 0; Bacteria - 242; Metazoa - 416; Fungi - 214; Plants - 458; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).  protein_id AT4G35790.3p  transcript_id AT4G35790.3  protein_id AT4G35790.3p  transcript_id AT4G35790.3  
At4g35790	chr4:016958934	0.0	C/16958934-16959875,16958657-16958773,16958152-16958346,16957756-16958061,16957598-16957666,16957309-16957456,16956952-16957100,16956687-16956836,16956347-16956547,16955774-16956070	AT4G35790.2  CDS  gene_syn ATPLDDELTA, F4B14.60, F4B14_60, PHOSPHOLIPASE D, PHOSPHOLIPASE D DELTA, PLDDELTA  gene ATPLDDELTA  function Encodes a protein with phospholipase D activity. Involved in phospolipase metabolism. Mutants are affected in hydrogen peroxide mediated cell death.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component plasma membrane|GO:0005886|14508007|TAS  go_component plasma membrane|GO:0005886|16618929|IDA  go_component microtubule cytoskeleton|GO:0015630|14508007|TAS  go_process response to cold|GO:0009409|14535880|IEP  go_process response to cold|GO:0009409|15004566|IMP  go_process response to water deprivation|GO:0009414|11489173|IEP  go_process programmed cell death|GO:0012501|14508007|IMP  go_process hyperosmotic salinity response|GO:0042538|11489173|IEP  go_process phosphatidic acid metabolic process|GO:0046473|11489173|IMP  go_function phospholipase D activity|GO:0004630|12397060|IDA  go_function phospholipase D activity|GO:0004630|14508007|IMP  go_function phospholipase D activity|GO:0004630||ISS  product ATPLDDELTA; phospholipase D  note ATPLDDELTA; FUNCTIONS IN: phospholipase D activity; INVOLVED IN: response to water deprivation, phosphatidic acid metabolic process, hyperosmotic salinity response, response to cold, programmed cell death; LOCATED IN: microtubule cytoskeleton, plasma membrane, vacuole, membrane; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phospholipase D (InterPro:IPR015679), Phospholipase D, plant (InterPro:IPR011402), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: PLDBETA1 (PHOSPHOLIPASE D BETA 1); phospholipase D (TAIR:AT2G42010.1); Has 1637 Blast hits to 1320 proteins in 299 species: Archae - 0; Bacteria - 335; Metazoa - 418; Fungi - 298; Plants - 462; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).  protein_id AT4G35790.2p  transcript_id AT4G35790.2  protein_id AT4G35790.2p  transcript_id AT4G35790.2  
At4g35800	chr4:016967809	0.0	C/16967809-16967892,16967334-16967618,16966961-16967245,16966725-16966883,16966478-16966639,16966175-16966395,16965959-16966100,16965538-16965873,16965157-16965443,16964722-16964980,16961575-16964636,16961390-16961461,16961115-16961283	AT4G35800.1  CDS  gene_syn F4B14.70, F4B14_70, NRPB1, RNA POLYMERASE II LARGE SUBUNIT, RNA_POL_II_LS, RNA_POL_II_LSRNA_POL_II_LS, RPB1  gene NRPB1  function Encodes the unique largest subunit of nuclear DNA-dependent RNA polymerase II; the ortholog of budding yeast RPB1 and a homolog of the E. coli RNA polymerase beta prime subunit.  go_component vacuole|GO:0005773|15539469|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process transcription|GO:0006350||IEA  go_process transcription from RNA polymerase II promoter|GO:0006366||IEA  go_component nucleus|GO:0005634||ISS  go_component DNA-directed RNA polymerase II, core complex|GO:0005665|19110459|IPI  go_process transcription|GO:0006350||ISS  go_function DNA binding|GO:0003677|2103447|ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899|2103447|ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA binding / DNA-directed RNA polymerase  note RNA POLYMERASE II LARGE SUBUNIT (NRPB1); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription, transcription from RNA polymerase II promoter; LOCATED IN: nucleus, chloroplast, DNA-directed RNA polymerase II, core complex, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase II, heptapeptide repeat, eukaryotic (InterPro:IPR000684), RNA polymerase Rpb1, domain 7 (InterPro:IPR007073), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081), RNA polymerase Rpb1, domain 6 (InterPro:IPR007075); BEST Arabidopsis thaliana protein match is: NRPC1; DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding / zinc ion binding (TAIR:AT5G60040.1); Has 147984 Blast hits to 62797 proteins in 5686 species: Archae - 517; Bacteria - 21638; Metazoa - 51910; Fungi - 25970; Plants - 13558; Viruses - 3360; Other Eukaryotes - 31031 (source: NCBI BLink).  protein_id AT4G35800.1p  transcript_id AT4G35800.1  protein_id AT4G35800.1p  transcript_id AT4G35800.1  
At4g35810	chr4:016968921	0.0	W/16968921-16969114,16969186-16969279,16969441-16969538,16969632-16969729,16969794-16969923,16970011-16970198,16970288-16970358	AT4G35810.1  CDS  gene_syn F4B14.80, F4B14_80  go_process protein metabolic process|GO:0019538||IEA  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||IEA  go_process peptidyl-proline hydroxylation to 4-hydroxy-L-proline|GO:0018401||ISS  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding; INVOLVED IN: protein metabolic process, peptidyl-proline hydroxylation to 4-hydroxy-L-proline; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT2G17720.1); Has 1858 Blast hits to 1846 proteins in 220 species: Archae - 0; Bacteria - 199; Metazoa - 951; Fungi - 54; Plants - 221; Viruses - 14; Other Eukaryotes - 419 (source: NCBI BLink).  protein_id AT4G35810.1p  transcript_id AT4G35810.1  protein_id AT4G35810.1p  transcript_id AT4G35810.1  
At4g35820	chr4:016971221	0.0	W/16971221-16971532,16971631-16971752,16971841-16971938,16972042-16972141,16972243-16972429	AT4G35820.1  CDS  gene_syn F4B14.90, F4B14_90  go_process protein metabolic process|GO:0019538||IEA  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||IEA  go_process peptidyl-proline hydroxylation to 4-hydroxy-L-proline|GO:0018401||ISS  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding; INVOLVED IN: protein metabolic process, peptidyl-proline hydroxylation to 4-hydroxy-L-proline; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G35810.1); Has 1693 Blast hits to 1693 proteins in 210 species: Archae - 0; Bacteria - 189; Metazoa - 845; Fungi - 29; Plants - 256; Viruses - 14; Other Eukaryotes - 360 (source: NCBI BLink).  protein_id AT4G35820.1p  transcript_id AT4G35820.1  protein_id AT4G35820.1p  transcript_id AT4G35820.1  
At4g35830	chr4:016977225	0.0	C/16977225-16977278,16976948-16977133,16976702-16976863,16976435-16976579,16976178-16976320,16976024-16976080,16975844-16975923,16975688-16975763,16975261-16975446,16975110-16975177,16974907-16975025,16974699-16974820,16974509-16974607,16973940-16974419,16973500-16973598,16973183-16973425,16973007-16973075	AT4G35830.2  CDS  gene_syn F4B14.100, F4B14_100  go_component plasma membrane|GO:0005886|17644812|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function 4 iron, 4 sulfur cluster binding|GO:0051539||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function aconitate hydratase activity|GO:0003994||ISS  product aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO)  note aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO); FUNCTIONS IN: aconitate hydratase activity, 4 iron, 4 sulfur cluster binding; INVOLVED IN: response to salt stress; LOCATED IN: mitochondrion, apoplast, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha (InterPro:IPR001030), Aconitase family, 4Fe-4S cluster binding site (InterPro:IPR018136), Aconitase A/isopropylmalate dehydratase small subunit, swivel (InterPro:IPR000573), Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 (InterPro:IPR015932), Aconitase/Iron regulatory protein 2/2-methylisocitrate dehydratase (InterPro:IPR015934), Aconitase-like core (InterPro:IPR015937), Aconitase/3-isopropylmalate dehydratase, swivel (InterPro:IPR015928), Aconitase/iron regulatory protein 2 (InterPro:IPR006249), Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomains 1 and 3 (InterPro:IPR015931); BEST Arabidopsis thaliana protein match is: aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative (TAIR:AT2G05710.1); Has 15290 Blast hits to 15153 proteins in 1531 species: Archae - 322; Bacteria - 6116; Metazoa - 476; Fungi - 448; Plants - 133; Viruses - 0; Other Eukaryotes - 7795 (source: NCBI BLink).  protein_id AT4G35830.2p  transcript_id AT4G35830.2  protein_id AT4G35830.2p  transcript_id AT4G35830.2  
At4g35830	chr4:016977946	0.0	C/16977946-16977949,16977689-16977793,16977422-16977582,16977225-16977317,16976948-16977133,16976702-16976863,16976435-16976579,16976178-16976320,16976024-16976080,16975844-16975923,16975688-16975763,16975261-16975446,16975110-16975177,16974907-16975025,16974699-16974820,16974509-16974607,16973940-16974419,16973500-16973598,16973183-16973425,16973007-16973075	AT4G35830.1  CDS  gene_syn F4B14.100, F4B14_100  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function 4 iron, 4 sulfur cluster binding|GO:0051539||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function aconitate hydratase activity|GO:0003994||ISS  product aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO)  note aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO); FUNCTIONS IN: aconitate hydratase activity, 4 iron, 4 sulfur cluster binding; INVOLVED IN: response to salt stress; LOCATED IN: mitochondrion, apoplast, plasma membrane, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha (InterPro:IPR001030), Aconitase family, 4Fe-4S cluster binding site (InterPro:IPR018136), Aconitase A/isopropylmalate dehydratase small subunit, swivel (InterPro:IPR000573), Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 (InterPro:IPR015932), Aconitase/Iron regulatory protein 2/2-methylisocitrate dehydratase (InterPro:IPR015934), Aconitase-like core (InterPro:IPR015937), Aconitase/3-isopropylmalate dehydratase, swivel (InterPro:IPR015928), Aconitase/iron regulatory protein 2 (InterPro:IPR006249), Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomains 1 and 3 (InterPro:IPR015931); BEST Arabidopsis thaliana protein match is: aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative (TAIR:AT2G05710.1); Has 15468 Blast hits to 15364 proteins in 1532 species: Archae - 322; Bacteria - 6124; Metazoa - 444; Fungi - 448; Plants - 133; Viruses - 0; Other Eukaryotes - 7997 (source: NCBI BLink).  protein_id AT4G35830.1p  transcript_id AT4G35830.1  protein_id AT4G35830.1p  transcript_id AT4G35830.1  
At4g35837	chr4:016980327	0.0	C/16980327-16980491	AT4G35837.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G35837.1p  transcript_id AT4G35837.1  protein_id AT4G35837.1p  transcript_id AT4G35837.1  
At4g35840	chr4:016981083	0.0	W/16981083-16981239,16981433-16981611,16981706-16981789,16981880-16982047,16982144-16982266	AT4G35840.1  CDS  gene_syn F4B14.110, F4B14_110  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G17730.1); Has 5941 Blast hits to 5924 proteins in 207 species: Archae - 0; Bacteria - 2; Metazoa - 1867; Fungi - 423; Plants - 2717; Viruses - 21; Other Eukaryotes - 911 (source: NCBI BLink).  protein_id AT4G35840.1p  transcript_id AT4G35840.1  protein_id AT4G35840.1p  transcript_id AT4G35840.1  
At4g35850	chr4:016983638	0.0	W/16983638-16983665,16983806-16983944,16984117-16984279,16984480-16984545,16984647-16984744,16984917-16985034,16985118-16985324,16985446-16985522,16985688-16985781,16986044-16986109,16986212-16986289,16986393-16986494,16986583-16986681	AT4G35850.1  CDS  gene_syn F4B14.120, F4B14_120  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G02150.1); Has 6373 Blast hits to 2522 proteins in 127 species: Archae - 1; Bacteria - 4; Metazoa - 104; Fungi - 77; Plants - 5853; Viruses - 0; Other Eukaryotes - 334 (source: NCBI BLink).  protein_id AT4G35850.1p  transcript_id AT4G35850.1  protein_id AT4G35850.1p  transcript_id AT4G35850.1  
At4g35860	chr4:016988540	0.0	C/16988540-16988587,16988048-16988130,16987481-16987685,16987319-16987387,16987118-16987210	AT4G35860.2  CDS  gene_syn ATGB2, ATRAB2C, ATRABB1B, F4B14.130, F4B14_130, GTP-BINDING 2, GTP-BINDING PROTEIN ATGB2  gene ATGB2  function GTP-binding protein ATGB2  go_component chloroplast|GO:0009507|18431481|IDA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525|8843944|IDA  go_function GTP binding|GO:0005525||ISS  product ATGB2 (GTP-BINDING 2); GTP binding  note GTP-BINDING 2 (ATGB2); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Ras small GTPase, Rab type (InterPro:IPR003579), Ras (InterPro:IPR013753); BEST Arabidopsis thaliana protein match is: RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C); GTP binding / GTPase (TAIR:AT4G17170.1); Has 19073 Blast hits to 19049 proteins in 560 species: Archae - 2; Bacteria - 56; Metazoa - 10423; Fungi - 2257; Plants - 1708; Viruses - 19; Other Eukaryotes - 4608 (source: NCBI BLink).  protein_id AT4G35860.2p  transcript_id AT4G35860.2  protein_id AT4G35860.2p  transcript_id AT4G35860.2  
At4g35860	chr4:016988794	0.0	C/16988794-16988839,16988540-16988679,16988048-16988130,16987481-16987685,16987319-16987387,16987118-16987210	AT4G35860.1  CDS  gene_syn ATGB2, ATRAB2C, ATRABB1B, F4B14.130, F4B14_130, GTP-BINDING 2, GTP-BINDING PROTEIN ATGB2  gene ATGB2  function GTP-binding protein ATGB2  go_component chloroplast|GO:0009507|18431481|IDA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525|8843944|IDA  go_function GTP binding|GO:0005525||ISS  product ATGB2 (GTP-BINDING 2); GTP binding  note GTP-BINDING 2 (ATGB2); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C); GTP binding / GTPase (TAIR:AT4G17170.1); Has 21378 Blast hits to 21327 proteins in 605 species: Archae - 11; Bacteria - 90; Metazoa - 12055; Fungi - 2480; Plants - 1843; Viruses - 19; Other Eukaryotes - 4880 (source: NCBI BLink).  protein_id AT4G35860.1p  transcript_id AT4G35860.1  protein_id AT4G35860.1p  transcript_id AT4G35860.1  
At4g35870	chr4:016990332	0.0	W/16990332-16992785	AT4G35870.1  CDS  gene_syn F4B14.140, F4B14_140  go_component membrane|GO:0016020||IEA  go_process protein targeting to vacuole|GO:0006623|17293568|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein targeting to vacuole; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: early-responsive to dehydration protein-related / ERD protein-related (TAIR:AT3G21620.1); Has 615 Blast hits to 495 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 267; Fungi - 110; Plants - 180; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT4G35870.1p  transcript_id AT4G35870.1  protein_id AT4G35870.1p  transcript_id AT4G35870.1  
At4g35880	chr4:016993339	0.0	W/16993339-16993652,16993750-16993885,16993994-16994229,16994314-16994538,16994628-16994763,16994850-16994923,16995010-16995109,16995211-16995268,16995344-16995415,16995498-16995721	AT4G35880.1  CDS  gene_syn F4B14.150, F4B14_150  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT2G17760.1); Has 1593 Blast hits to 1587 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 284; Fungi - 199; Plants - 1019; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).  protein_id AT4G35880.1p  transcript_id AT4G35880.1  protein_id AT4G35880.1p  transcript_id AT4G35880.1  
At4g35890	chr4:016997433	0.0	W/16997433-16997954,16998428-16998917,16998987-16999119,16999230-16999320,16999832-16999903,17000147-17000410	AT4G35890.1  CDS  gene_syn T19K4.20  go_component chloroplast|GO:0009507||IEA  product La domain-containing protein  note La domain-containing protein; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630); BEST Arabidopsis thaliana protein match is: La domain-containing protein (TAIR:AT5G66100.1); Has 8713 Blast hits to 4009 proteins in 397 species: Archae - 0; Bacteria - 644; Metazoa - 2811; Fungi - 1022; Plants - 283; Viruses - 52; Other Eukaryotes - 3901 (source: NCBI BLink).  protein_id AT4G35890.1p  transcript_id AT4G35890.1  protein_id AT4G35890.1p  transcript_id AT4G35890.1  
At4g35900	chr4:017004746	0.0	W/17004746-17005457,17005589-17005614	AT4G35900.1  CDS  gene_syn FD, FD-1, T19K4.30, atbzip14  gene FD  function bZIP protein required for positive regulation of flowering. Mutants are late flowering. FD interacts with FT to promote flowering.Expressed in the shoot apex in floral anlagen, then declines in floral primordia.  go_component nucleus|GO:0005634|16099979|IDA  go_process photoperiodism|GO:0009648|9615462|IMP  go_process regulation of flower development|GO:0009909|16099979|IGI  go_process regulation of flower development|GO:0009909||NAS  go_process positive regulation of flower development|GO:0009911|1896021|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function protein binding|GO:0005515|16099979|IPI  go_function protein binding|GO:0005515|16099980|IPI  go_function transcription activator activity|GO:0016563|16099980|IMP  product FD; DNA binding / protein binding / transcription activator/ transcription factor  note FD; FUNCTIONS IN: protein binding, transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: positive regulation of flower development, regulation of flower development, photoperiodism; LOCATED IN: nucleus; EXPRESSED IN: shoot apex, leaf whorl, embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827); BEST Arabidopsis thaliana protein match is: ATBZIP27; transcription factor (TAIR:AT2G17770.1); Has 930 Blast hits to 362 proteins in 61 species: Archae - 0; Bacteria - 6; Metazoa - 323; Fungi - 33; Plants - 126; Viruses - 0; Other Eukaryotes - 442 (source: NCBI BLink).  protein_id AT4G35900.1p  transcript_id AT4G35900.1  protein_id AT4G35900.1p  transcript_id AT4G35900.1  
At4g35905	chr4:017007967	0.0	C/17007967-17008067,17007820-17007874,17007284-17007361	AT4G35905.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF343 (InterPro:IPR005651); Has 684 Blast hits to 684 proteins in 219 species: Archae - 0; Bacteria - 436; Metazoa - 42; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 193 (source: NCBI BLink).  protein_id AT4G35905.1p  transcript_id AT4G35905.1  protein_id AT4G35905.1p  transcript_id AT4G35905.1  
At4g35910	chr4:017010719	0.0	C/17010719-17011014,17010288-17010636,17010108-17010194,17009711-17009832,17009531-17009609,17009036-17009430,17008817-17008865	AT4G35910.1  CDS  gene_syn T19K4.40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 222 Blast hits to 208 proteins in 90 species: Archae - 2; Bacteria - 0; Metazoa - 113; Fungi - 80; Plants - 19; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT4G35910.1p  transcript_id AT4G35910.1  protein_id AT4G35910.1p  transcript_id AT4G35910.1  
At4g35920	chr4:017013782	0.0	C/17013782-17014192,17013291-17013703,17013006-17013121,17012804-17012875,17012590-17012696,17012242-17012335,17012106-17012158	AT4G35920.1  CDS  gene_syn MCA1, T19K4.50, mid1-complementing activity 1  gene MCA1  function Encodes an integral plasma membrane protein. Functionally complements the yeast mid1 mutant, a deficiency of Ca2+ influx. Involved in Ca2+ influx and mechanical sensing in roots. An over-expression line showed increased Ca2+ uptake than the wild type plant. The primary root of a knock-out mutant failed to penetrate a harder agar medium from a softer medium.  go_component integral to plasma membrane|GO:0005887|17360695|IDA  go_process calcium ion transport|GO:0006816|17360695|IGI  go_process calcium ion transport|GO:0006816|17360695|IMP  go_process mechanosensory behavior|GO:0007638|17360695|IMP  go_function molecular_function|GO:0003674||ND  product MCA1 (mid1-complementing activity 1)  note mid1-complementing activity 1 (MCA1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mechanosensory behavior, calcium ion transport; LOCATED IN: integral to plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: MCA2 (mid1-complementing activity 2) (TAIR:AT2G17780.1); Has 426 Blast hits to 421 proteins in 55 species: Archae - 0; Bacteria - 2; Metazoa - 48; Fungi - 32; Plants - 333; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT4G35920.1p  transcript_id AT4G35920.1  protein_id AT4G35920.1p  transcript_id AT4G35920.1  
At4g35920	chr4:017013782	0.0	C/17013782-17014192,17013291-17013703,17013006-17013121,17012804-17012875,17012590-17012696,17012242-17012335,17012106-17012158	AT4G35920.2  CDS  gene_syn MCA1, T19K4.50, mid1-complementing activity 1  gene MCA1  function Encodes an integral plasma membrane protein. Functionally complements the yeast mid1 mutant, a deficiency of Ca2+ influx. Involved in Ca2+ influx and mechanical sensing in roots. An over-expression line showed increased Ca2+ uptake than the wild type plant. The primary root of a knock-out mutant failed to penetrate a harder agar medium from a softer medium.  go_component integral to plasma membrane|GO:0005887|17360695|IDA  go_process calcium ion transport|GO:0006816|17360695|IGI  go_process calcium ion transport|GO:0006816|17360695|IMP  go_process mechanosensory behavior|GO:0007638|17360695|IMP  go_function molecular_function|GO:0003674||ND  product MCA1 (mid1-complementing activity 1)  note mid1-complementing activity 1 (MCA1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mechanosensory behavior, calcium ion transport; LOCATED IN: integral to plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: MCA2 (mid1-complementing activity 2) (TAIR:AT2G17780.1); Has 426 Blast hits to 421 proteins in 55 species: Archae - 0; Bacteria - 2; Metazoa - 48; Fungi - 32; Plants - 333; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT4G35920.2p  transcript_id AT4G35920.2  protein_id AT4G35920.2p  transcript_id AT4G35920.2  
At4g35920	chr4:017013782	0.0	C/17013782-17014192,17013291-17013703,17013006-17013121,17012804-17012875,17012590-17012696,17012242-17012335,17012106-17012158	AT4G35920.3  CDS  gene_syn MCA1, T19K4.50, mid1-complementing activity 1  gene MCA1  function Encodes an integral plasma membrane protein. Functionally complements the yeast mid1 mutant, a deficiency of Ca2+ influx. Involved in Ca2+ influx and mechanical sensing in roots. An over-expression line showed increased Ca2+ uptake than the wild type plant. The primary root of a knock-out mutant failed to penetrate a harder agar medium from a softer medium.  go_component integral to plasma membrane|GO:0005887|17360695|IDA  go_process calcium ion transport|GO:0006816|17360695|IGI  go_process calcium ion transport|GO:0006816|17360695|IMP  go_process mechanosensory behavior|GO:0007638|17360695|IMP  go_function molecular_function|GO:0003674||ND  product MCA1 (mid1-complementing activity 1)  note mid1-complementing activity 1 (MCA1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mechanosensory behavior, calcium ion transport; LOCATED IN: integral to plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: MCA2 (mid1-complementing activity 2) (TAIR:AT2G17780.1); Has 426 Blast hits to 421 proteins in 55 species: Archae - 0; Bacteria - 2; Metazoa - 48; Fungi - 32; Plants - 333; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT4G35920.3p  transcript_id AT4G35920.3  protein_id AT4G35920.3p  transcript_id AT4G35920.3  
At4g35930	chr4:017019482	0.0	W/17019482-17019991,17020093-17020167,17020271-17020380,17020474-17020744	AT4G35930.1  CDS  gene_syn T19K4.60  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G61340.1); Has 54 Blast hits to 53 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G35930.1p  transcript_id AT4G35930.1  protein_id AT4G35930.1p  transcript_id AT4G35930.1  
At4g35940	chr4:017021672	0.0	W/17021672-17021755,17022203-17022911,17023031-17023593	AT4G35940.1  CDS  gene_syn T19K4.70  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17787.1); Has 44845 Blast hits to 22313 proteins in 768 species: Archae - 67; Bacteria - 1905; Metazoa - 14358; Fungi - 2753; Plants - 864; Viruses - 129; Other Eukaryotes - 24769 (source: NCBI BLink).  protein_id AT4G35940.1p  transcript_id AT4G35940.1  protein_id AT4G35940.1p  transcript_id AT4G35940.1  
At4g35950	chr4:017025416	0.0	C/17025416-17025514,17025208-17025295,17025012-17025121,17024874-17024937,17024383-17024447,17024240-17024305,17024051-17024152	AT4G35950.1  CDS  gene_syn ARABIDOPSIS RAC-LIKE 6, ARAC6, ATRAC6, ATROP5, RAC-LIKE 2, RAC2, RHO-RELATED PROTEIN FROM PLANTS 5, ROP5, T19K4.80  gene ARAC6  function A member of ROP GTPases gene family-like. GTP binding protein Arac6.  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_function GTP binding|GO:0005525||IEA  go_component nucleus|GO:0005634|15469496|IDA  go_component cytoplasm|GO:0005737|15469496|IDA  go_function GTP binding|GO:0005525||ISS  product ARAC6 (ARABIDOPSIS RAC-LIKE 6); GTP binding  note ARABIDOPSIS RAC-LIKE 6 (ARAC6); FUNCTIONS IN: GTP binding; INVOLVED IN: small GTPase mediated signal transduction; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rho type (InterPro:IPR003578); BEST Arabidopsis thaliana protein match is: ARAC1; GTP binding (TAIR:AT2G17800.2); Has 19455 Blast hits to 19430 proteins in 561 species: Archae - 9; Bacteria - 44; Metazoa - 10806; Fungi - 2379; Plants - 1719; Viruses - 19; Other Eukaryotes - 4479 (source: NCBI BLink).  protein_id AT4G35950.1p  transcript_id AT4G35950.1  protein_id AT4G35950.1p  transcript_id AT4G35950.1  
At4g35970	chr4:017028651	0.0	W/17028651-17028760,17028844-17028968,17029072-17029121,17029223-17029288,17029371-17029416,17029496-17029578,17029665-17029744,17029832-17029934,17030029-17030205	AT4G35970.1  CDS  gene_syn APX5, ASCORBATE PEROXIDASE 5, T19K4.100  gene APX5  function Encodes a microsomal ascorbate peroxidase APX5. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function heme binding|GO:0020037||IEA  go_component cellular_component|GO:0005575||ND  go_function peroxidase activity|GO:0004601||ISS  go_function L-ascorbate peroxidase activity|GO:0016688||ISS  product APX5 (ASCORBATE PEROXIDASE 5); L-ascorbate peroxidase/ heme binding / peroxidase  note ASCORBATE PEROXIDASE 5 (APX5); FUNCTIONS IN: L-ascorbate peroxidase activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: APX3 (ASCORBATE PEROXIDASE 3); L-ascorbate peroxidase (TAIR:AT4G35000.1); Has 8476 Blast hits to 6937 proteins in 889 species: Archae - 65; Bacteria - 2908; Metazoa - 2; Fungi - 612; Plants - 2524; Viruses - 0; Other Eukaryotes - 2365 (source: NCBI BLink).  protein_id AT4G35970.1p  transcript_id AT4G35970.1  protein_id AT4G35970.1p  transcript_id AT4G35970.1  
At4g35980	chr4:017031569	0.0	C/17031569-17031586,17031033-17031146,17030816-17030947	AT4G35980.1  CDS  gene_syn T19K4.110  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 21 Blast hits to 21 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G35980.1p  transcript_id AT4G35980.1  protein_id AT4G35980.1p  transcript_id AT4G35980.1  
At4g35985	chr4:017032964	0.0	C/17032964-17033862,17032720-17032886,17032544-17032628,17032268-17032463	AT4G35985.1  CDS  go_component chloroplast|GO:0009507||IEA  product senescence/dehydration-associated protein-related  note senescence/dehydration-associated protein-related; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Senescence-associated (InterPro:IPR009686); BEST Arabidopsis thaliana protein match is: ERD7 (EARLY-RESPONSIVE TO DEHYDRATION 7) (TAIR:AT2G17840.1); Has 182 Blast hits to 182 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 84; Fungi - 10; Plants - 81; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT4G35985.1p  transcript_id AT4G35985.1  protein_id AT4G35985.1p  transcript_id AT4G35985.1  
At4g35987	chr4:017035121	0.0	W/17035121-17035193,17035286-17035451,17035549-17035628,17035920-17035980,17036065-17036180,17036317-17036449,17036538-17036823	AT4G35987.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27400.1); Has 10 Blast hits to 10 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G35987.1p  transcript_id AT4G35987.1  protein_id AT4G35987.1p  transcript_id AT4G35987.1  
At4g36000	chr4:017037873	0.0	C/17037873-17038297,17037583-17037784	AT4G36000.1  CDS  gene_syn T19K4.130, T19K4_130  go_component cellular_component|GO:0005575||ND  go_process response to other organism|GO:0051707||ISS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24180.1); Has 1043 Blast hits to 945 proteins in 126 species: Archae - 0; Bacteria - 6; Metazoa - 42; Fungi - 41; Plants - 948; Viruses - 2; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G36000.1p  transcript_id AT4G36000.1  protein_id AT4G36000.1p  transcript_id AT4G36000.1  
At4g36010	chr4:017040213	0.0	C/17040213-17040976,17039472-17039613	AT4G36010.1  CDS  gene_syn T19K4.140, T19K4_140  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process response to other organism|GO:0051707||ISS  go_function molecular_function|GO:0003674||ND  product pathogenesis-related thaumatin family protein  note pathogenesis-related thaumatin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: pathogenesis-related thaumatin family protein (TAIR:AT2G17860.1); Has 1082 Blast hits to 1063 proteins in 149 species: Archae - 0; Bacteria - 27; Metazoa - 51; Fungi - 51; Plants - 938; Viruses - 4; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT4G36010.1p  transcript_id AT4G36010.1  protein_id AT4G36010.1p  transcript_id AT4G36010.1  
At4g36010	chr4:017040213	0.0	C/17040213-17040976,17039472-17039613	AT4G36010.2  CDS  gene_syn T19K4.140, T19K4_140  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process response to other organism|GO:0051707||ISS  go_function molecular_function|GO:0003674||ND  product pathogenesis-related thaumatin family protein  note pathogenesis-related thaumatin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: pathogenesis-related thaumatin family protein (TAIR:AT2G17860.1); Has 1082 Blast hits to 1063 proteins in 149 species: Archae - 0; Bacteria - 27; Metazoa - 51; Fungi - 51; Plants - 938; Viruses - 4; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT4G36010.2p  transcript_id AT4G36010.2  protein_id AT4G36010.2p  transcript_id AT4G36010.2  
At4g36020	chr4:017043443	0.0	C/17043443-17044342	AT4G36020.1  CDS  gene_syn CSDP1, T19K4.150, T19K4_150, cold shock domain protein 1  gene CSDP1  function Encodes a cold shock domain protein. Involved in cold acclimation by blocking the secondary structure of mRNA which in turn facilitates translation at cold temperature.  go_component cellular_component|GO:0005575||ND  go_process response to cold|GO:0009409|17169986|IEP  go_process response to cold|GO:0009409|17169986|IGI  go_process RNA secondary structure unwinding|GO:0010501|17169986|IDA  go_process DNA duplex unwinding|GO:0032508|17169986|IDA  go_function nucleic acid binding|GO:0003676||ISS  go_function double-stranded DNA binding|GO:0003690|17169986|IDA  go_function single-stranded DNA binding|GO:0003697|17169986|IDA  go_function RNA binding|GO:0003723|17169986|IDA  product CSDP1 (cold shock domain protein 1); RNA binding / double-stranded DNA binding / nucleic acid binding / single-stranded DNA binding  note cold shock domain protein 1 (CSDP1); FUNCTIONS IN: double-stranded DNA binding, single-stranded DNA binding, RNA binding, nucleic acid binding; INVOLVED IN: RNA secondary structure unwinding, response to cold, DNA duplex unwinding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Cold shock protein (InterPro:IPR011129), Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, CCHC retroviral-type (InterPro:IPR013084), Cold-shock protein, DNA-binding (InterPro:IPR002059); BEST Arabidopsis thaliana protein match is: cold-shock DNA-binding family protein (TAIR:AT2G17870.1); Has 53845 Blast hits to 23878 proteins in 1664 species: Archae - 33; Bacteria - 11972; Metazoa - 3942; Fungi - 1468; Plants - 2011; Viruses - 29453; Other Eukaryotes - 4966 (source: NCBI BLink).  protein_id AT4G36020.1p  transcript_id AT4G36020.1  protein_id AT4G36020.1p  transcript_id AT4G36020.1  
At4g36030	chr4:017045084	0.0	C/17045084-17047096	AT4G36030.1  CDS  gene_syn ARMADILLO REPEAT ONLY 3, ARO3, T19K4.160, T19K4_160  gene ARO3  function Armadillo repeat protein. One of a family of four in Arabidopsis. Expressed in vegetative tissues, anthers and ovules.  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product ARO3 (ARMADILLO REPEAT ONLY 3); binding  note ARMADILLO REPEAT ONLY 3 (ARO3); FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARO2 (ARMADILLO REPEAT ONLY 2); binding (TAIR:AT5G66200.1); Has 366 Blast hits to 337 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 61; Fungi - 84; Plants - 147; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT4G36030.1p  transcript_id AT4G36030.1  protein_id AT4G36030.1p  transcript_id AT4G36030.1  
At4g36040	chr4:017049708	0.0	C/17049708-17050193	AT4G36040.1  CDS  gene_syn T19K4.170, T19K4_170  go_component chloroplast|GO:0009507||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein (J11)  note DNAJ heat shock N-terminal domain-containing protein (J11); FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: DNAJ heat shock protein, putative (TAIR:AT2G17880.1); Has 12724 Blast hits to 12724 proteins in 1824 species: Archae - 85; Bacteria - 4544; Metazoa - 2505; Fungi - 1062; Plants - 954; Viruses - 5; Other Eukaryotes - 3569 (source: NCBI BLink).  protein_id AT4G36040.1p  transcript_id AT4G36040.1  protein_id AT4G36040.1p  transcript_id AT4G36040.1  
At4g36052	chr4:017052347	0.0	W/17052347-17053499	AT4G36052.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT4G36050  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G36052.1  
At4g36050	chr4:017054041	0.0	C/17054041-17054081,17053860-17053940,17053557-17053760,17053277-17053428,17052487-17053163,17052345-17052416	AT4G36050.1  CDS  gene_syn T19K4.180, T19K4_180  go_process DNA repair|GO:0006281||IEA  go_function nuclease activity|GO:0004518||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product endonuclease/exonuclease/phosphatase family protein  note endonuclease/exonuclease/phosphatase family protein; FUNCTIONS IN: zinc ion binding, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), Exodeoxyribonuclease III xth (InterPro:IPR004808), Zinc finger, GRF-type (InterPro:IPR010666); Has 2426 Blast hits to 925 proteins in 152 species: Archae - 0; Bacteria - 110; Metazoa - 768; Fungi - 269; Plants - 35; Viruses - 2; Other Eukaryotes - 1242 (source: NCBI BLink).  protein_id AT4G36050.1p  transcript_id AT4G36050.1  protein_id AT4G36050.1p  transcript_id AT4G36050.1  
At4g36050	chr4:017054937	0.0	C/17054937-17055044,17054739-17054850,17054425-17054646,17054243-17054328,17054041-17054156,17053860-17053940,17053557-17053760,17053277-17053428,17052487-17053163,17052323-17052397	AT4G36050.2  CDS  gene_syn T19K4.180, T19K4_180  go_process DNA repair|GO:0006281||IEA  go_function nuclease activity|GO:0004518||IEA  go_component cellular_component|GO:0005575||ND  product endonuclease/exonuclease/phosphatase family protein  note endonuclease/exonuclease/phosphatase family protein; FUNCTIONS IN: nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), Exodeoxyribonuclease III xth (InterPro:IPR004808); Has 6598 Blast hits to 5097 proteins in 1267 species: Archae - 49; Bacteria - 2666; Metazoa - 895; Fungi - 431; Plants - 67; Viruses - 2; Other Eukaryotes - 2488 (source: NCBI BLink).  protein_id AT4G36050.2p  transcript_id AT4G36050.2  protein_id AT4G36050.2p  transcript_id AT4G36050.2  
At4g36060	chr4:017055397	0.0	W/17055397-17055491,17055562-17055680,17055762-17055889,17055979-17056371,17056442-17056567	AT4G36060.1  CDS  gene_syn T19K4.190, T19K4_190  go_component chloroplast|GO:0009507|15028209|IDA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast, cytoplasm; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT3G19860.2); Has 458 Blast hits to 458 proteins in 88 species: Archae - 0; Bacteria - 31; Metazoa - 50; Fungi - 18; Plants - 318; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT4G36060.1p  transcript_id AT4G36060.1  protein_id AT4G36060.1p  transcript_id AT4G36060.1  
At4g36060	chr4:017055521	0.0	W/17055521-17055680,17055762-17055889,17055979-17056371,17056442-17056567	AT4G36060.2  CDS  gene_syn T19K4.190, T19K4_190  go_component chloroplast|GO:0009507|15028209|IDA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast, cytoplasm; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT3G19860.2); Has 405 Blast hits to 404 proteins in 74 species: Archae - 0; Bacteria - 27; Metazoa - 37; Fungi - 13; Plants - 302; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT4G36060.2p  transcript_id AT4G36060.2  protein_id AT4G36060.2p  transcript_id AT4G36060.2  
At4g36070	chr4:017059278	0.0	C/17059278-17059595,17058919-17059049,17058778-17058819,17058563-17058674,17058383-17058461,17058136-17058305,17057928-17058054,17057727-17057842,17057536-17057643,17057396-17057458,17057138-17057311,17056907-17057071	AT4G36070.1  CDS  gene_syn CPK18, T19K4.200, T19K4_200  gene CPK18  function member of Calcium Dependent Protein Kinase  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  product CPK18; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ protein kinase/ protein serine/threonine kinase  note CPK18; FUNCTIONS IN: protein serine/threonine kinase activity, calmodulin-dependent protein kinase activity, protein kinase activity, ATP binding, calcium ion binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; EXPRESSED IN: sperm cell, male gametophyte; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CPK16; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT2G17890.1); Has 91113 Blast hits to 89495 proteins in 2650 species: Archae - 81; Bacteria - 8041; Metazoa - 39458; Fungi - 9638; Plants - 15384; Viruses - 564; Other Eukaryotes - 17947 (source: NCBI BLink).  protein_id AT4G36070.1p  transcript_id AT4G36070.1  protein_id AT4G36070.1p  transcript_id AT4G36070.1  
At4g36080	chr4:017077571	0.0	C/17077571-17077628,17076649-17077364,17076377-17076502,17076191-17076276,17075908-17076016,17075319-17075414,17075126-17075188,17074982-17075041,17074664-17074729,17074303-17074366,17074078-17074202,17072765-17073997,17071159-17072148,17070744-17071079,17070309-17070567,17070000-17070222,17069502-17069892,17069003-17069152,17068707-17068928,17068305-17068526,17067332-17068057,17066816-17067073,17066394-17066741,17065624-17066012,17065131-17065548,17063688-17064986,17063108-17063368,17062827-17063015,17062725-17062784,17062260-17062646,17061663-17062091,17061238-17061516,17060533-17061084,17060239-17060448,17059996-17060115	AT4G36080.1  CDS  go_function binding|GO:0005488||IEA  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_function inositol or phosphatidylinositol kinase activity|GO:0004428||ISS  product FAT domain-containing protein / phosphatidylinositol 3- and 4-kinase family protein  note FAT domain-containing protein / phosphatidylinositol 3- and 4-kinase family protein; FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, binding, phosphotransferase activity, alcohol group as acceptor; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3- and 4-kinase, catalytic (InterPro:IPR000403), PIK-related kinase, FAT (InterPro:IPR003151), PIK-related kinase (InterPro:IPR014009), Armadillo-type fold (InterPro:IPR016024), PIK-related kinase, FATC (InterPro:IPR003152), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: binding / inositol or phosphatidylinositol kinase/ phosphotransferase, alcohol group as acceptor (TAIR:AT2G17930.1); Has 1656 Blast hits to 1366 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 738; Fungi - 440; Plants - 119; Viruses - 0; Other Eukaryotes - 359 (source: NCBI BLink).  protein_id AT4G36080.1p  transcript_id AT4G36080.1  protein_id AT4G36080.1p  transcript_id AT4G36080.1  
At4g36090	chr4:017079633	0.0	C/17079633-17080185,17079443-17079528,17079046-17079356,17078878-17078949,17078376-17078712	AT4G36090.2  CDS  gene_syn T19K4.220, T19K4_220  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT2G17970.2); Has 140 Blast hits to 140 proteins in 45 species: Archae - 0; Bacteria - 2; Metazoa - 59; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT4G36090.2p  transcript_id AT4G36090.2  protein_id AT4G36090.2p  transcript_id AT4G36090.2  
At4g36090	chr4:017080508	0.0	C/17080508-17080670,17079633-17080226,17079443-17079528,17079042-17079356	AT4G36090.1  CDS  gene_syn T19K4.220, T19K4_220  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT2G17970.1); Has 118 Blast hits to 118 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 44; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT4G36090.1p  transcript_id AT4G36090.1  protein_id AT4G36090.1p  transcript_id AT4G36090.1  
At4g36090	chr4:017080508	0.0	C/17080508-17080670,17079633-17080226,17079443-17079528,17079046-17079356,17078878-17078949,17078376-17078712	AT4G36090.3  CDS  gene_syn T19K4.220, T19K4_220  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT2G17970.1); Has 140 Blast hits to 140 proteins in 45 species: Archae - 0; Bacteria - 2; Metazoa - 59; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT4G36090.3p  transcript_id AT4G36090.3  protein_id AT4G36090.3p  transcript_id AT4G36090.3  
At4g36100	chr4:017082579	0.0	W/17082579-17082896,17082951-17083343	AT4G36100.1  CDS  gene_syn T19K4.230, T19K4_230  go_component peroxisome|GO:0005777|12154131|IDA  go_process vesicle docking during exocytosis|GO:0006904||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  product unknown protein  note INVOLVED IN: vesicle-mediated transport, vesicle docking during exocytosis; LOCATED IN: peroxisome; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619), Protein of unknown function DUF641, plant (InterPro:IPR006943); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45260.1); Has 148 Blast hits to 148 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 10; Plants - 131; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G36100.1p  transcript_id AT4G36100.1  protein_id AT4G36100.1p  transcript_id AT4G36100.1  
At4g36105	chr4:017083965	0.0	W/17083965-17084527,17084777-17084951	AT4G36105.1  CDS  go_component nucleus|GO:0005634|14617066|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17990.1); Has 281 Blast hits to 278 proteins in 64 species: Archae - 0; Bacteria - 19; Metazoa - 174; Fungi - 2; Plants - 45; Viruses - 2; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT4G36105.1p  transcript_id AT4G36105.1  protein_id AT4G36105.1p  transcript_id AT4G36105.1  
At4g36110	chr4:017090031	0.0	W/17090031-17090345	AT4G36110.1  CDS  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive protein, putative  note auxin-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT2G18010.1); Has 700 Blast hits to 689 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 699; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G36110.1p  transcript_id AT4G36110.1  protein_id AT4G36110.1p  transcript_id AT4G36110.1  
At4g36120	chr4:017096448	0.0	C/17096448-17096573,17096132-17096330,17093795-17096051,17093674-17093722,17093213-17093572	AT4G36120.1  CDS  gene_syn T19K4.250, T19K4_250  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869, plant (InterPro:IPR008587); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19835.1); Has 33725 Blast hits to 18934 proteins in 1012 species: Archae - 345; Bacteria - 2745; Metazoa - 18786; Fungi - 2729; Plants - 1477; Viruses - 100; Other Eukaryotes - 7543 (source: NCBI BLink).  protein_id AT4G36120.1p  transcript_id AT4G36120.1  protein_id AT4G36120.1p  transcript_id AT4G36120.1  
At4g36130	chr4:017097613	0.0	W/17097613-17098052,17098320-17098656	AT4G36130.1  CDS  gene_syn F23E13.20  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L8 (RPL8C)  note 60S ribosomal protein L8 (RPL8C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, plasma membrane, vacuole; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein L2, domain 3 (InterPro:IPR014726), Ribosomal protein L2 (InterPro:IPR002171); BEST Arabidopsis thaliana protein match is: EMB2296 (embryo defective 2296); structural constituent of ribosome (TAIR:AT2G18020.1); Has 7437 Blast hits to 7435 proteins in 2204 species: Archae - 236; Bacteria - 3125; Metazoa - 339; Fungi - 188; Plants - 929; Viruses - 0; Other Eukaryotes - 2620 (source: NCBI BLink).  protein_id AT4G36130.1p  transcript_id AT4G36130.1  protein_id AT4G36130.1p  transcript_id AT4G36130.1  
At4g36140	chr4:017103902	0.0	C/17103902-17104479,17103691-17103825,17102644-17103597,17101235-17102357,17100848-17101144,17099993-17100766,17098956-17099918	AT4G36140.1  CDS  gene_syn F23E13.30, F23E13_30  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: TTR1; protein binding / transcription factor (TAIR:AT5G45050.1); Has 14727 Blast hits to 8608 proteins in 360 species: Archae - 4; Bacteria - 472; Metazoa - 248; Fungi - 23; Plants - 13771; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink).  protein_id AT4G36140.1p  transcript_id AT4G36140.1  protein_id AT4G36140.1p  transcript_id AT4G36140.1  
At4g36150	chr4:017104776	0.0	W/17104776-17105263,17105359-17106508,17106639-17106947,17107037-17107984,17108067-17108711	AT4G36150.1  CDS  gene_syn F23E13.40, F23E13_40  go_component chloroplast|GO:0009507||IEA  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, protein binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: RPS4 (RESISTANT TO P. SYRINGAE 4); receptor (TAIR:AT5G45250.1); Has 16119 Blast hits to 12130 proteins in 478 species: Archae - 16; Bacteria - 817; Metazoa - 1614; Fungi - 86; Plants - 12887; Viruses - 8; Other Eukaryotes - 691 (source: NCBI BLink).  protein_id AT4G36150.1p  transcript_id AT4G36150.1  protein_id AT4G36150.1p  transcript_id AT4G36150.1  
At4g36160	chr4:017112723	0.0	C/17112723-17112891,17112344-17112615,17110877-17111569	AT4G36160.1  CDS  gene_syn ANAC076, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 76, F23E13.50, F23E13_50, VASCULAR-RELATED NAC-DOMAIN 2, VND2  gene ANAC076  function Encodes a NAC-domain transcription factor. Expressed in the vascular tissue.  go_component nucleus|GO:0005634|16581911|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ANAC076 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 76); transcription factor  note ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 76 (ANAC076); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: VND1 (VASCULAR RELATED NAC-DOMAIN PROTEIN 1); transcription factor (TAIR:AT2G18060.1); Has 1612 Blast hits to 1610 proteins in 55 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 1611; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G36160.1p  transcript_id AT4G36160.1  protein_id AT4G36160.1p  transcript_id AT4G36160.1  
At4g36170	chr4:017113872	0.0	W/17113872-17113879,17113972-17114152,17118038-17118097,17119595-17119834	AT4G36170.1  CDS  gene_syn F23E13.60, F23E13_60  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G36170.1p  transcript_id AT4G36170.1  protein_id AT4G36170.1p  transcript_id AT4G36170.1  
At4g36180	chr4:017120813	0.0	C/17120813-17123698,17120209-17120733	AT4G36180.1  CDS  gene_syn F23E13.70, F23E13_70  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / protein kinase family protein (TAIR:AT1G75640.1); Has 189124 Blast hits to 106156 proteins in 2972 species: Archae - 110; Bacteria - 15865; Metazoa - 78346; Fungi - 7930; Plants - 63050; Viruses - 439; Other Eukaryotes - 23384 (source: NCBI BLink).  protein_id AT4G36180.1p  transcript_id AT4G36180.1  protein_id AT4G36180.1p  transcript_id AT4G36180.1  
At4g36190	chr4:017124052	0.0	W/17124052-17124231,17124357-17124482,17124583-17124738,17124842-17125027,17125129-17125245,17125337-17125390,17125459-17125530,17125658-17125863,17125957-17126051,17126143-17126217,17126345-17126428,17126546-17126643	AT4G36190.1  CDS  gene_syn F23E13.1  go_component vacuole|GO:0005773|15539469|IDA  go_process proteolysis|GO:0006508||IEA  go_function serine-type peptidase activity|GO:0008236||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type peptidase activity|GO:0008236||ISS  product serine-type peptidase  note serine-type peptidase; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; EXPRESSED IN: male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Peptidase S28 (InterPro:IPR008758); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase S28 family protein (TAIR:AT4G36195.1); Has 908 Blast hits to 876 proteins in 119 species: Archae - 0; Bacteria - 18; Metazoa - 516; Fungi - 136; Plants - 101; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).  protein_id AT4G36190.1p  transcript_id AT4G36190.1  protein_id AT4G36190.1p  transcript_id AT4G36190.1  
At4g36195	chr4:017127202	0.0	W/17127202-17127381,17127488-17127613,17127704-17127859,17127957-17128142,17128244-17128360,17128460-17128513,17128593-17128664,17128808-17129013,17129098-17129192,17129275-17129349,17129474-17129557,17129672-17129787	AT4G36195.1  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process proteolysis|GO:0006508||IEA  go_function serine-type peptidase activity|GO:0008236||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type peptidase activity|GO:0008236||ISS  product serine carboxypeptidase S28 family protein  note serine carboxypeptidase S28 family protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: stem, guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Peptidase S28 (InterPro:IPR008758); BEST Arabidopsis thaliana protein match is: serine-type peptidase (TAIR:AT4G36190.1); Has 912 Blast hits to 876 proteins in 118 species: Archae - 0; Bacteria - 16; Metazoa - 518; Fungi - 136; Plants - 101; Viruses - 0; Other Eukaryotes - 141 (source: NCBI BLink).  protein_id AT4G36195.1p  transcript_id AT4G36195.1  protein_id AT4G36195.1p  transcript_id AT4G36195.1  
At4g36195	chr4:017127202	0.0	W/17127202-17127381,17127488-17127613,17127704-17127859,17127957-17128142,17128244-17128360,17128460-17128513,17128593-17128664,17128808-17129013,17129098-17129192,17129275-17129349,17129474-17129557,17129705-17129787	AT4G36195.2  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process proteolysis|GO:0006508||IEA  go_function serine-type peptidase activity|GO:0008236||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type peptidase activity|GO:0008236||ISS  product serine carboxypeptidase S28 family protein  note serine carboxypeptidase S28 family protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: stem, guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Peptidase S28 (InterPro:IPR008758); BEST Arabidopsis thaliana protein match is: serine-type peptidase (TAIR:AT4G36190.1); Has 910 Blast hits to 875 proteins in 119 species: Archae - 0; Bacteria - 16; Metazoa - 517; Fungi - 136; Plants - 101; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink).  protein_id AT4G36195.2p  transcript_id AT4G36195.2  protein_id AT4G36195.2p  transcript_id AT4G36195.2  
At4g36197	chr4:017130052	0.0	W/17130052-17130124	AT4G36197.1  tRNA  gene_syn 67210.TRNA-GLU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Glu (anticodon: CTC)  transcript_id AT4G36197.1  
At4g36210	chr4:017130354	0.0	W/17130354-17130592,17130729-17130810,17130906-17131421,17131667-17131835,17131925-17132077,17132248-17132345,17132534-17132625,17132783-17132853,17132943-17133078,17133240-17133299,17133416-17133498,17133580-17133656,17133777-17133847,17133940-17133997,17134189-17134302	AT4G36210.3  CDS  gene_syn F23E13.100, F23E13_100  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF726 (InterPro:IPR007941); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G18100.1); Has 517 Blast hits to 490 proteins in 158 species: Archae - 10; Bacteria - 78; Metazoa - 130; Fungi - 157; Plants - 42; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).  protein_id AT4G36210.3p  transcript_id AT4G36210.3  protein_id AT4G36210.3p  transcript_id AT4G36210.3  
At4g36210	chr4:017130951	0.0	W/17130951-17131421,17131667-17131835,17131925-17132077,17132248-17132345,17132534-17132625,17132783-17132853,17132943-17133078,17133240-17133299,17133416-17133498,17133580-17133656,17133777-17133847,17133940-17133997,17134189-17134302	AT4G36210.1  CDS  gene_syn F23E13.100, F23E13_100  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF726 (InterPro:IPR007941); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G18100.1); Has 510 Blast hits to 483 proteins in 158 species: Archae - 10; Bacteria - 78; Metazoa - 128; Fungi - 153; Plants - 42; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).  protein_id AT4G36210.1p  transcript_id AT4G36210.1  protein_id AT4G36210.1p  transcript_id AT4G36210.1  
At4g36210	chr4:017130951	0.0	W/17130951-17131421,17131667-17131835,17131925-17132077,17132248-17132345,17132534-17132625,17132783-17132853,17132943-17133078,17133240-17133357,17133777-17133847,17133940-17133997,17134189-17134302	AT4G36210.2  CDS  gene_syn F23E13.100, F23E13_100  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF726 (InterPro:IPR007941); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G18100.1); Has 468 Blast hits to 437 proteins in 142 species: Archae - 6; Bacteria - 62; Metazoa - 125; Fungi - 157; Plants - 41; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT4G36210.2p  transcript_id AT4G36210.2  protein_id AT4G36210.2p  transcript_id AT4G36210.2  
At4g36220	chr4:017139109	0.0	C/17139109-17139619,17138550-17138980,17137584-17138204	AT4G36220.1  CDS  gene_syn CYP84A1, F23E13.110, F23E13_110, FAH1, FERULATE-5-HYDROXYLASE, FERULIC ACID 5-HYDROXYLASE 1  gene FAH1  function encodes ferulate 5-hydroxylase (F5H). Involved in lignin biosynthesis.  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process phenylpropanoid biosynthetic process|GO:0009699|16167893|TAS  go_process phenylpropanoid biosynthetic process|GO:0009699|8692910|TAS  go_process lignin biosynthetic process|GO:0009809|8692910|TAS  go_process lignin biosynthetic process|GO:0009809|9618461|IMP  go_process lignin biosynthetic process|GO:0009809|9880351|TAS  go_process response to UV-B|GO:0010224|8539286|IMP  go_function monooxygenase activity|GO:0004497|10468559|IDA  go_function ferulate 5-hydroxylase activity|GO:0046424|8692910|IMP  product FAH1 (FERULIC ACID 5-HYDROXYLASE 1); ferulate 5-hydroxylase/ monooxygenase  note FERULIC ACID 5-HYDROXYLASE 1 (FAH1); FUNCTIONS IN: ferulate 5-hydroxylase activity, monooxygenase activity; INVOLVED IN: response to UV-B, lignin biosynthetic process, phenylpropanoid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, putative / ferulate-5-hydroxylase, putative (TAIR:AT5G04330.1); Has 24337 Blast hits to 24172 proteins in 1308 species: Archae - 32; Bacteria - 2470; Metazoa - 10518; Fungi - 4512; Plants - 5734; Viruses - 6; Other Eukaryotes - 1065 (source: NCBI BLink).  protein_id AT4G36220.1p  transcript_id AT4G36220.1  protein_id AT4G36220.1p  transcript_id AT4G36220.1  
At4g36230	chr4:017145586	0.0	W/17145586-17146251	AT4G36230.1  CDS  gene_syn F23E13.120, F23E13_120  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage.  protein_id AT4G36230.1p  transcript_id AT4G36230.1  protein_id AT4G36230.1p  transcript_id AT4G36230.1  
At4g36240	chr4:017148011	0.0	C/17148011-17148211,17147376-17147891	AT4G36240.1  CDS  gene_syn F23E13.130, F23E13_130  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product zinc finger (GATA type) family protein  note zinc finger (GATA type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: zinc finger (GATA type) family protein (TAIR:AT5G66320.2); Has 793 Blast hits to 761 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 330; Plants - 416; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT4G36240.1p  transcript_id AT4G36240.1  protein_id AT4G36240.1p  transcript_id AT4G36240.1  
At4g36245	chr4:017149471	0.0	W/17149471-17149542	AT4G36245.1  tRNA  gene_syn 67210.TRNA-PRO-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: CGG)  transcript_id AT4G36245.1  
At4g36250	chr4:017151029	0.0	W/17151029-17151298,17151441-17151537,17151629-17151835,17151909-17152033,17152133-17152237,17152318-17152490,17152572-17152662,17152752-17152901,17153145-17153381	AT4G36250.1  CDS  gene_syn ALDH3F1, Aldehyde Dehydrogenase 3F1, F23E13.140, F23E13_140  gene ALDH3F1  function Encodes a putative aldehyde dehydrogenase. The gene is not responsive to osmotic stress and is expressed constitutively at a low level in plantlets and root cultures.  go_component membrane|GO:0016020|17432890|IDA  go_process cellular aldehyde metabolic process|GO:0006081||IEA  go_process metabolic process|GO:0008152||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_function 3-chloroallyl aldehyde dehydrogenase activity|GO:0004028||ISS  go_function aldehyde dehydrogenase (NAD) activity|GO:0004029|11849595|ISS  product ALDH3F1 (Aldehyde Dehydrogenase 3F1); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD)  note Aldehyde Dehydrogenase 3F1 (ALDH3F1); FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, aldehyde dehydrogenase (NAD) activity; INVOLVED IN: cellular aldehyde metabolic process, metabolic process; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase NAD(P)-dependent (InterPro:IPR012394), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162); BEST Arabidopsis thaliana protein match is: ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) (TAIR:AT1G44170.2); Has 35776 Blast hits to 35737 proteins in 1718 species: Archae - 238; Bacteria - 17658; Metazoa - 2047; Fungi - 1310; Plants - 560; Viruses - 0; Other Eukaryotes - 13963 (source: NCBI BLink).  protein_id AT4G36250.1p  transcript_id AT4G36250.1  protein_id AT4G36250.1p  transcript_id AT4G36250.1  
At4g36260	chr4:017156442	0.0	C/17156442-17157006,17155705-17156108	AT4G36260.1  CDS  gene_syn F23E13.150, F23E13_150, SHI RELATED SEQUENCE 2, SRS2, STY2, STYLISH 2  gene STY2  function A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Encodes protein with a single zinc finger motif and a members of a small gene family of putative transcription factors in which the SHORT INTERNODES (SHI) gene is found. STY2/STY1 double mutants showed defective style, stigma as well as serrated leaves.  go_component nucleus|GO:0005634|12361963|ISS  go_process negative regulation of gibberellic acid mediated signaling|GO:0009938||NAS  go_process xylem and phloem pattern formation|GO:0010051|12361963|IGI  go_process auxin homeostasis|GO:0010252|16740145|IGI  go_process style development|GO:0048479|12361963|IGI  go_process stigma development|GO:0048480|12361963|IGI  go_function transcription factor activity|GO:0003700||NAS  product STY2 (STYLISH 2); transcription factor  note STYLISH 2 (STY2); FUNCTIONS IN: transcription factor activity; INVOLVED IN: auxin homeostasis, style development, xylem and phloem pattern formation, negative regulation of gibberellic acid mediated signaling, stigma development; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SRS4 (SHI-RELATED SEQUENCE 4) (TAIR:AT2G18120.1); Has 2247 Blast hits to 1772 proteins in 195 species: Archae - 0; Bacteria - 816; Metazoa - 469; Fungi - 78; Plants - 249; Viruses - 37; Other Eukaryotes - 598 (source: NCBI BLink).  protein_id AT4G36260.1p  transcript_id AT4G36260.1  protein_id AT4G36260.1p  transcript_id AT4G36260.1  
At4g36268	chr4:017160536	0.0	W/17160536-17160706	AT4G36268.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G36268.1p  transcript_id AT4G36268.1  protein_id AT4G36268.1p  transcript_id AT4G36268.1  
At4g36270	chr4:017164152	0.0	C/17164152-17164227,17163963-17164038,17163801-17163879,17163562-17163708,17163296-17163439,17163132-17163173,17162841-17162984,17162586-17162678,17162306-17162357,17162097-17162208,17161702-17161984,17161473-17161543,17161345-17161387,17161159-17161257	AT4G36270.1  CDS  gene_syn F23E13.160, F23E13_160  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ATP binding|GO:0005524||ISS  product ATP binding  note ATP binding; FUNCTIONS IN: ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ATP-binding region, ATPase-like domain-containing protein (TAIR:AT4G36280.1); Has 339 Blast hits to 293 proteins in 48 species: Archae - 0; Bacteria - 20; Metazoa - 198; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT4G36270.1p  transcript_id AT4G36270.1  protein_id AT4G36270.1p  transcript_id AT4G36270.1  
At4g36280	chr4:017169064	0.0	C/17169064-17169277,17168919-17168993,17168774-17168808,17168563-17168641,17168377-17168466,17168190-17168265,17168032-17168110,17167787-17167915,17167522-17167620,17167318-17167422,17167082-17167228,17166834-17166926,17166554-17166605,17166347-17166458,17165953-17166235,17165814-17165884,17165690-17165732,17165513-17165611	AT4G36280.1  CDS  gene_syn F23E13.170, F23E13_170  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ATP binding|GO:0005524||ISS  product ATP-binding region, ATPase-like domain-containing protein  note ATP-binding region, ATPase-like domain-containing protein; FUNCTIONS IN: ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ATP-binding region, ATPase-like (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: ATP-binding region, ATPase-like domain-containing protein (TAIR:AT4G36290.1); Has 306 Blast hits to 292 proteins in 51 species: Archae - 0; Bacteria - 16; Metazoa - 167; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT4G36280.1p  transcript_id AT4G36280.1  protein_id AT4G36280.1p  transcript_id AT4G36280.1  
At4g36290	chr4:017172950	0.0	C/17172950-17173187,17172793-17172867,17172673-17172707,17172489-17172567,17172302-17172391,17172133-17172208,17171966-17172044,17171746-17171874,17171559-17171657,17171362-17171466,17171128-17171274,17170928-17171020,17170737-17170788,17170521-17170632,17170114-17170399,17169969-17170039,17169846-17169888,17169669-17169767	AT4G36290.1  CDS  gene_syn F23E13.180, F23E13_180  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ATP binding|GO:0005524||ISS  product ATP-binding region, ATPase-like domain-containing protein  note ATP-binding region, ATPase-like domain-containing protein; FUNCTIONS IN: ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ATP-binding region, ATPase-like (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: ATP-binding region, ATPase-like domain-containing protein (TAIR:AT4G36280.1); Has 329 Blast hits to 316 proteins in 61 species: Archae - 0; Bacteria - 34; Metazoa - 167; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT4G36290.1p  transcript_id AT4G36290.1  protein_id AT4G36290.1p  transcript_id AT4G36290.1  
At4g36350	chr4:017175699	0.0	C/17175699-17175857,17175206-17175421,17174994-17175105,17174680-17174906,17174455-17174593,17174034-17174376,17173737-17173941	AT4G36350.1  CDS  gene_syn ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 25, ATPAP25, F23E13.190, F23E13_190, PAP25, PURPLE ACID PHOSPHATASE 25  gene PAP25  go_component cell wall|GO:0005618|14595688|IDA  go_process biological_process|GO:0008150||ND  go_function acid phosphatase activity|GO:0003993|16244908|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PAP25 (PURPLE ACID PHOSPHATASE 25); acid phosphatase/ protein serine/threonine phosphatase  note PURPLE ACID PHOSPHATASE 25 (PAP25); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: leaf whorl, petal, sepal, flower, cultured cell; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Purple acid phosphatase, N-terminal (InterPro:IPR015914), Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: PAP6 (PURPLE ACID PHOSPHATASE 6); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT1G56360.1); Has 1191 Blast hits to 1175 proteins in 258 species: Archae - 3; Bacteria - 305; Metazoa - 169; Fungi - 63; Plants - 448; Viruses - 0; Other Eukaryotes - 203 (source: NCBI BLink).  protein_id AT4G36350.1p  transcript_id AT4G36350.1  protein_id AT4G36350.1p  transcript_id AT4G36350.1  
At4g36360	chr4:017180958	0.0	C/17180958-17181143,17180710-17180805,17180507-17180619,17180311-17180377,17180106-17180198,17179851-17179994,17179649-17179737,17179443-17179548,17179243-17179330,17179024-17179142,17178762-17178926,17178492-17178670,17178281-17178390,17178089-17178198,17177892-17178002,17177693-17177806,17177069-17177608,17176840-17176977	AT4G36360.2  CDS  gene_syn BGAL3, F23E13.200, F23E13_200, beta-galactosidase 3  gene BGAL3  function putative beta-galactosidase (BGAL3 gene)  go_component beta-galactosidase complex|GO:0009341||IEA  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  go_function sugar binding|GO:0005529||IEA  go_function cation binding|GO:0043169||IEA  go_function beta-galactosidase activity|GO:0004565||ISS  product BGAL3 (beta-galactosidase 3); beta-galactosidase/ catalytic/ cation binding / sugar binding  note beta-galactosidase 3 (BGAL3); FUNCTIONS IN: cation binding, sugar binding, beta-galactosidase activity, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system, beta-galactosidase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: BGAL1 (Beta galactosidase 1); beta-galactosidase/ catalytic/ cation binding / heme binding / peroxidase/ sugar binding (TAIR:AT3G13750.1); Has 1374 Blast hits to 1272 proteins in 264 species: Archae - 11; Bacteria - 403; Metazoa - 388; Fungi - 120; Plants - 382; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT4G36360.2p  transcript_id AT4G36360.2  protein_id AT4G36360.2p  transcript_id AT4G36360.2  
At4g36360	chr4:017180958	0.0	C/17180958-17181143,17180710-17180805,17180507-17180619,17180311-17180377,17180106-17180198,17179851-17179994,17179649-17179737,17179443-17179548,17179243-17179330,17179024-17179142,17178762-17178926,17178492-17178670,17178281-17178390,17178089-17178198,17177892-17178002,17177693-17177806,17177069-17177608,17176840-17176980	AT4G36360.1  CDS  gene_syn BGAL3, F23E13.200, F23E13_200, beta-galactosidase 3  gene BGAL3  function putative beta-galactosidase (BGAL3 gene)  go_component beta-galactosidase complex|GO:0009341||IEA  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process lactose catabolic process|GO:0005990||IEA  go_process lactose catabolic process, using glucoside 3-dehydrogenase|GO:0019513||IEA  go_process lactose catabolic process via UDP-galactose|GO:0019515||IEA  go_function catalytic activity|GO:0003824||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  go_function sugar binding|GO:0005529||IEA  go_function cation binding|GO:0043169||IEA  go_function beta-galactosidase activity|GO:0004565||ISS  product BGAL3 (beta-galactosidase 3); beta-galactosidase/ catalytic/ cation binding / sugar binding  note beta-galactosidase 3 (BGAL3); FUNCTIONS IN: sugar binding, cation binding, beta-galactosidase activity, catalytic activity; INVOLVED IN: lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process; LOCATED IN: endomembrane system, beta-galactosidase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: BGAL1 (Beta galactosidase 1); beta-galactosidase/ catalytic/ cation binding / heme binding / peroxidase/ sugar binding (TAIR:AT3G13750.1); Has 1529 Blast hits to 1422 proteins in 269 species: Archae - 11; Bacteria - 403; Metazoa - 539; Fungi - 120; Plants - 382; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT4G36360.1p  transcript_id AT4G36360.1  protein_id AT4G36360.1p  transcript_id AT4G36360.1  
At4g36370	chr4:017187250	0.0	W/17187250-17187324,17187482-17187610	AT4G36370.1  CDS  gene_syn F23E13.210, F23E13_210  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G36370.1p  transcript_id AT4G36370.1  protein_id AT4G36370.1p  transcript_id AT4G36370.1  
At4g36380	chr4:017191892	0.0	C/17191892-17192202,17190295-17190619,17190040-17190189,17189686-17189946,17189108-17189197,17188887-17188965,17188708-17188814,17188455-17188585,17187973-17188093	AT4G36380.1  CDS  gene_syn AP22.10, AP22_10, CYP90C1, ROT3, ROTUNDIFOLIA 3  gene ROT3  function Encodes a cytochrome P-450 gene that is involved in leaf blade expansion by controlling polar cell expansion in the leaf length direction. Member of the CYP90C CYP450 family. ROT3 was shown to be involved in brassinosteroid biosynthesis, most likely in the conversion step of typhasterol (TY) to castasterone (CS). As 6-deoxo-CS was unable to restore the phenotype of rot3-1, it has been postulated that ROT3 might be specifically involved in the conversion of TY to CS in the C6-oxidation pathway of brassinolide. Recently, CYP90C1 was shown to catalyse the C-23 hydroxylation of several brassinosteroids (the enzyme has a broad specificity for 22-hydroxylated substrates).  go_process leaf morphogenesis|GO:0009965|9694802|IMP  go_process brassinosteroid homeostasis|GO:0010268|15908602|IEP  go_process brassinosteroid biosynthetic process|GO:0016132|15703058|IMP  go_process monopolar cell growth|GO:0042814|9694802|IMP  go_process leaf development|GO:0048366|17138693|IGI  go_process petal development|GO:0048441|17138693|IGI  go_process stamen development|GO:0048443|17138693|IGI  go_function steroid hydroxylase activity|GO:0008395|9694802|TAS  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen|GO:0016709|17138693|IDA  go_function oxygen binding|GO:0019825|9694802|ISS  product ROT3 (ROTUNDIFOLIA 3); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen / oxygen binding / steroid hydroxylase  note ROTUNDIFOLIA 3 (ROT3); FUNCTIONS IN: steroid hydroxylase activity, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, oxygen binding; INVOLVED IN: in 7 processes; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group IV (InterPro:IPR002403), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP90D1; oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen / oxygen binding (TAIR:AT3G13730.1); Has 21544 Blast hits to 21503 proteins in 1196 species: Archae - 23; Bacteria - 3252; Metazoa - 9394; Fungi - 3027; Plants - 4491; Viruses - 3; Other Eukaryotes - 1354 (source: NCBI BLink).  protein_id AT4G36380.1p  transcript_id AT4G36380.1  protein_id AT4G36380.1p  transcript_id AT4G36380.1  
At4g36390	chr4:017196702	0.0	C/17196702-17197054,17195371-17196419,17194746-17195266	AT4G36390.1  CDS  gene_syn AP22.85, AP22_85  go_component chloroplast|GO:0009507||IEA  go_function catalytic activity|GO:0003824||IEA  go_function iron-sulfur cluster binding|GO:0051536||IEA  go_process biological_process|GO:0008150||ND  product radical SAM domain-containing protein / TRAM domain-containing protein  note radical SAM domain-containing protein / TRAM domain-containing protein; FUNCTIONS IN: iron-sulfur cluster binding, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0004 (InterPro:IPR005839), tRNA-i(6)A37 modification enzyme MiaB (InterPro:IPR006463), Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Uncharacterised protein family UPF0004, N-terminal (InterPro:IPR013848), Radical SAM (InterPro:IPR007197), Deoxyribonuclease/rho motif-related TRAM (InterPro:IPR002792); BEST Arabidopsis thaliana protein match is: radical SAM domain-containing protein / TRAM domain-containing protein (TAIR:AT1G72090.1); Has 10307 Blast hits to 10292 proteins in 1299 species: Archae - 219; Bacteria - 4582; Metazoa - 258; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 5193 (source: NCBI BLink).  protein_id AT4G36390.1p  transcript_id AT4G36390.1  protein_id AT4G36390.1p  transcript_id AT4G36390.1  
At4g36400	chr4:017197265	0.0	W/17197265-17197370,17197591-17197919,17198008-17198109,17198265-17198312,17198410-17198480,17198612-17198730,17198818-17198913,17199018-17199127,17199227-17199307,17199418-17199515,17199634-17199742,17199821-17199926,17200013-17200098,17200170-17200295,17200380-17200472	AT4G36400.1  CDS  gene_syn AP22.14, AP22_14  go_component mitochondrion|GO:0005739|18385124|IDA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_process biological_process|GO:0008150||ND  go_function electron carrier activity|GO:0009055||ISS  product FAD linked oxidase family protein  note FAD linked oxidase family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), FAD-linked oxidase, C-terminal (InterPro:IPR004113), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094), FAD-binding, type 2, subdomain 1 (InterPro:IPR016167); BEST Arabidopsis thaliana protein match is: FAD linked oxidase family protein (TAIR:AT5G06580.1); Has 12154 Blast hits to 12076 proteins in 1151 species: Archae - 141; Bacteria - 6321; Metazoa - 332; Fungi - 395; Plants - 69; Viruses - 0; Other Eukaryotes - 4896 (source: NCBI BLink).  protein_id AT4G36400.1p  transcript_id AT4G36400.1  protein_id AT4G36400.1p  transcript_id AT4G36400.1  
At4g36400	chr4:017197265	0.0	W/17197265-17197370,17197591-17197919,17198008-17198109,17198265-17198312,17198410-17198480,17198612-17198730,17198818-17198913,17199018-17199127,17199227-17199307,17199418-17199515,17199634-17199742,17199821-17199926,17200013-17200098,17200170-17200295,17200380-17200472	AT4G36400.2  CDS  gene_syn AP22.14, AP22_14  go_component mitochondrion|GO:0005739|18385124|IDA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_process biological_process|GO:0008150||ND  go_function electron carrier activity|GO:0009055||ISS  product FAD linked oxidase family protein  note FAD linked oxidase family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), FAD-linked oxidase, C-terminal (InterPro:IPR004113), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD-binding, type 2, subdomain 1 (InterPro:IPR016167), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD linked oxidase family protein (TAIR:AT5G06580.1); Has 12154 Blast hits to 12076 proteins in 1151 species: Archae - 141; Bacteria - 6321; Metazoa - 332; Fungi - 395; Plants - 69; Viruses - 0; Other Eukaryotes - 4896 (source: NCBI BLink).  protein_id AT4G36400.2p  transcript_id AT4G36400.2  protein_id AT4G36400.2p  transcript_id AT4G36400.2  
At4g36410	chr4:017201969	0.0	W/17201969-17201998,17202102-17202205,17202282-17202384,17202473-17202536,17202619-17202707,17202795-17202890	AT4G36410.1  CDS  gene_syn AP22.89, AP22_89, UBC17, UBIQUITIN-CONJUGATING ENZYME 17  gene UBC17  function ubiquitin-conjugating enzyme  go_function small conjugating protein ligase activity|GO:0019787||IEA  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process response to gibberellin stimulus|GO:0009739|17933900|IEP  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC17 (UBIQUITIN-CONJUGATING ENZYME 17); small conjugating protein ligase/ ubiquitin-protein ligase  note UBIQUITIN-CONJUGATING ENZYME 17 (UBC17); FUNCTIONS IN: ubiquitin-protein ligase activity, small conjugating protein ligase activity; INVOLVED IN: response to gibberellin stimulus, ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC16 (ubiquitin-conjugating enzyme 16); small conjugating protein ligase/ ubiquitin-protein ligase (TAIR:AT1G75440.1); Has 6282 Blast hits to 6281 proteins in 295 species: Archae - 0; Bacteria - 0; Metazoa - 3029; Fungi - 1247; Plants - 962; Viruses - 16; Other Eukaryotes - 1028 (source: NCBI BLink).  protein_id AT4G36410.1p  transcript_id AT4G36410.1  protein_id AT4G36410.1p  transcript_id AT4G36410.1  
At4g36420	chr4:017203718	0.0	C/17203718-17204257	AT4G36420.1  CDS  gene_syn AP22.77, AP22_77  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L12 family protein  note ribosomal protein L12 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L12, chloroplast (InterPro:IPR015608), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719), Ribosomal protein L7/L12, oligomerisation (InterPro:IPR008932), Ribosomal protein L7/L12, C-terminal (InterPro:IPR013823); BEST Arabidopsis thaliana protein match is: ribosomal protein L12 family protein (TAIR:AT1G70190.1); Has 5784 Blast hits to 5784 proteins in 1564 species: Archae - 0; Bacteria - 3201; Metazoa - 134; Fungi - 85; Plants - 177; Viruses - 0; Other Eukaryotes - 2187 (source: NCBI BLink).  protein_id AT4G36420.1p  transcript_id AT4G36420.1  protein_id AT4G36420.1p  transcript_id AT4G36420.1  
At4g36430	chr4:017205693	0.0	C/17205693-17205917,17205421-17205612,17205179-17205344,17204648-17205060	AT4G36430.1  CDS  gene_syn AP22.54, AP22_54  go_component cell wall|GO:0005618|14595688|IDA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process response to other organism|GO:0051707|11277426|IEP  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to other organism; LOCATED IN: cell wall; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT2G18150.1); Has 2968 Blast hits to 2951 proteins in 229 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 92; Plants - 2824; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT4G36430.1p  transcript_id AT4G36430.1  protein_id AT4G36430.1p  transcript_id AT4G36430.1  
At4g36440	chr4:017209822	0.0	C/17209822-17209873,17209659-17209741,17209500-17209538,17209361-17209414,17209204-17209278,17209011-17209040,17208882-17208924,17208729-17208774,17208552-17208645,17208414-17208466,17208150-17208337,17207959-17208051,17207809-17207875,17207654-17207720,17207501-17207554,17207213-17207359	AT4G36440.1  CDS  gene_syn AP22.38, AP22_38  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G36440.1p  transcript_id AT4G36440.1  protein_id AT4G36440.1p  transcript_id AT4G36440.1  
At4g36450	chr4:017210991	0.0	C/17210991-17211413,17210245-17210907	AT4G36450.1  CDS  gene_syn AP22.98, AP22_98, ATMPK14, MPK14, Mitogen-activated protein kinase 14  gene ATMPK14  function member of MAP Kinase  go_process signal transduction|GO:0007165|12119167|IC  go_function MAP kinase activity|GO:0004707|11544109|ISS  go_function MAP kinase activity|GO:0004707|12119167|ISS  go_function kinase activity|GO:0016301||ISS  product ATMPK14 (Mitogen-activated protein kinase 14); MAP kinase/ kinase  note Mitogen-activated protein kinase 14 (ATMPK14); FUNCTIONS IN: MAP kinase activity, kinase activity; INVOLVED IN: signal transduction; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: ATMPK7 (ARABIDOPSIS THALIANA MAP KINASE 7); MAP kinase/ kinase (TAIR:AT2G18170.1); Has 88991 Blast hits to 87752 proteins in 3107 species: Archae - 43; Bacteria - 6512; Metazoa - 39854; Fungi - 8184; Plants - 16761; Viruses - 447; Other Eukaryotes - 17190 (source: NCBI BLink).  protein_id AT4G36450.1p  transcript_id AT4G36450.1  protein_id AT4G36450.1p  transcript_id AT4G36450.1  
At4g36460	chr4:017212662	0.0	C/17212662-17213099	AT4G36460.1  CDS  gene_syn AP22.6, AP22_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G36460.1p  transcript_id AT4G36460.1  protein_id AT4G36460.1p  transcript_id AT4G36460.1  
At4g36470	chr4:017216392	0.0	C/17216392-17216475,17215893-17216306,17215542-17215814,17215128-17215472	AT4G36470.1  CDS  gene_syn AP22.82, AP22_82  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757|10852939|ISS  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757|11287667|IMP  product S-adenosyl-L-methionine:carboxyl methyltransferase family protein  note S-adenosyl-L-methionine:carboxyl methyltransferase family protein; FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, sepal, hypocotyl; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: JMT (JASMONIC ACID CARBOXYL METHYLTRANSFERASE); jasmonate O-methyltransferase (TAIR:AT1G19640.1); Has 610 Blast hits to 599 proteins in 100 species: Archae - 0; Bacteria - 52; Metazoa - 12; Fungi - 3; Plants - 450; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT4G36470.1p  transcript_id AT4G36470.1  protein_id AT4G36470.1p  transcript_id AT4G36470.1  
At4g36480	chr4:017218598	0.0	W/17218598-17218703,17218816-17218910,17219035-17219126,17219207-17219300,17219379-17219451,17219546-17219678,17219817-17219991,17220093-17220233,17220320-17220415,17220508-17220649,17220749-17220876,17220951-17221124	AT4G36480.1  CDS  gene_syn AP22.60, AP22_60, ATLCB1, EMB2779, EMBRYO DEFECTIVE 2779, FBR11, FUMONISIN B1 RESISTANT 11, LCB1, LONG-CHAIN BASE1  gene ATLCB1  function Encodes the LCB1 subunit of serine palmitoyltransferase. Together with the LCB2 subunit, forms a functional serine palmitoyltransferase complex, which catalyzes the first reaction of sphingolipid biosynthesis. Knockout of LCB1 was embryo lethal. Partial suppression of LCB1 expression led to smaller plants due to reduced cell expansion.  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum|GO:0005783|17194770|IDA  go_process cell growth|GO:0016049|17194770|IMP  go_process sphingolipid biosynthetic process|GO:0030148|17194770|TAS  go_process sphingolipid biosynthetic process|GO:0030148||ISS  go_function serine C-palmitoyltransferase activity|GO:0004758|17194770|IGI  go_function serine C-palmitoyltransferase activity|GO:0004758||ISS  go_function protein binding|GO:0005515|17194770|IPI  product ATLCB1 (LONG-CHAIN BASE1); protein binding / serine C-palmitoyltransferase  note LONG-CHAIN BASE1 (ATLCB1); FUNCTIONS IN: protein binding, serine C-palmitoyltransferase activity; INVOLVED IN: cell growth, sphingolipid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: SPT1 (SERINE PALMITOYLTRANSFERASE 1); serine C-palmitoyltransferase (TAIR:AT3G48780.1); Has 6568 Blast hits to 6544 proteins in 1232 species: Archae - 45; Bacteria - 3725; Metazoa - 624; Fungi - 397; Plants - 139; Viruses - 6; Other Eukaryotes - 1632 (source: NCBI BLink).  protein_id AT4G36480.1p  transcript_id AT4G36480.1  protein_id AT4G36480.1p  transcript_id AT4G36480.1  
At4g36480	chr4:017218598	0.0	W/17218598-17218703,17218816-17218910,17219035-17219126,17219207-17219300,17219379-17219451,17219546-17219678,17219817-17219991,17220093-17220233,17220320-17220415,17220508-17220649,17220749-17220876,17220951-17221124	AT4G36480.2  CDS  gene_syn AP22.60, AP22_60, ATLCB1, EMB2779, EMBRYO DEFECTIVE 2779, FBR11, FUMONISIN B1 RESISTANT 11, LCB1, LONG-CHAIN BASE1  gene ATLCB1  function Encodes the LCB1 subunit of serine palmitoyltransferase. Together with the LCB2 subunit, forms a functional serine palmitoyltransferase complex, which catalyzes the first reaction of sphingolipid biosynthesis. Knockout of LCB1 was embryo lethal. Partial suppression of LCB1 expression led to smaller plants due to reduced cell expansion.  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum|GO:0005783|17194770|IDA  go_process cell growth|GO:0016049|17194770|IMP  go_process sphingolipid biosynthetic process|GO:0030148|17194770|TAS  go_process sphingolipid biosynthetic process|GO:0030148||ISS  go_function serine C-palmitoyltransferase activity|GO:0004758|17194770|IGI  go_function serine C-palmitoyltransferase activity|GO:0004758||ISS  go_function protein binding|GO:0005515|17194770|IPI  product ATLCB1 (LONG-CHAIN BASE1); protein binding / serine C-palmitoyltransferase  note LONG-CHAIN BASE1 (ATLCB1); FUNCTIONS IN: protein binding, serine C-palmitoyltransferase activity; INVOLVED IN: cell growth, sphingolipid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: SPT1 (SERINE PALMITOYLTRANSFERASE 1); serine C-palmitoyltransferase (TAIR:AT3G48780.1); Has 6568 Blast hits to 6544 proteins in 1232 species: Archae - 45; Bacteria - 3725; Metazoa - 624; Fungi - 397; Plants - 139; Viruses - 6; Other Eukaryotes - 1632 (source: NCBI BLink).  protein_id AT4G36480.2p  transcript_id AT4G36480.2  protein_id AT4G36480.2p  transcript_id AT4G36480.2  
At4g36490	chr4:017222099	0.0	W/17222099-17222114,17222194-17222519,17222616-17222882,17222968-17223045,17223129-17223230,17223322-17223371,17223459-17223558,17223638-17223712,17223814-17223876,17223956-17224016,17224125-17224528,17224606-17224680,17224794-17224808	AT4G36490.1  CDS  gene_syn AP22.26, AP22_26, ATSFH12, SEC14-LIKE 12, SFH12  gene SFH12  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  go_function phosphatidylinositol transporter activity|GO:0008526|16697077|IGI  product SFH12 (SEC14-LIKE 12); phosphatidylinositol transporter/ transporter  note SEC14-LIKE 12 (SFH12); FUNCTIONS IN: phosphatidylinositol transporter activity, transporter activity; INVOLVED IN: transport; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative (TAIR:AT2G18180.1); Has 1853 Blast hits to 1845 proteins in 180 species: Archae - 0; Bacteria - 0; Metazoa - 647; Fungi - 416; Plants - 460; Viruses - 0; Other Eukaryotes - 330 (source: NCBI BLink).  protein_id AT4G36490.1p  transcript_id AT4G36490.1  protein_id AT4G36490.1p  transcript_id AT4G36490.1  
At4g36500	chr4:017226139	0.0	C/17226139-17226507	AT4G36500.1  CDS  gene_syn AP22.75, AP22_75  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G18210.1); Has 24 Blast hits to 24 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G36500.1p  transcript_id AT4G36500.1  protein_id AT4G36500.1p  transcript_id AT4G36500.1  
At4g36510	chr4:017228777	0.0	W/17228777-17228927,17229075-17229190,17229254-17229451	AT4G36510.1  CDS  gene_syn AP22.52, AP22_52  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G36510.1p  transcript_id AT4G36510.1  protein_id AT4G36510.1p  transcript_id AT4G36510.1  
At4g36515	chr4:017230224	0.0	C/17230224-17230259,17230083-17230140,17229878-17229951	AT4G36515.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G36515.1p  transcript_id AT4G36515.1  protein_id AT4G36515.1p  transcript_id AT4G36515.1  
At4g36520	chr4:017234990	0.0	C/17234990-17235435,17233164-17234905,17231489-17233129,17231323-17231393,17231178-17231243,17230998-17231087,17230719-17230895,17230589-17230624	AT4G36520.1  CDS  gene_syn AP22.19, AP22_19  go_function heat shock protein binding|GO:0031072||IEA  product heat shock protein binding  note heat shock protein binding; FUNCTIONS IN: heat shock protein binding; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: heat shock protein binding (TAIR:AT4G12780.1); Has 309719 Blast hits to 122515 proteins in 2725 species: Archae - 1650; Bacteria - 42799; Metazoa - 141126; Fungi - 26081; Plants - 11809; Viruses - 1319; Other Eukaryotes - 84935 (source: NCBI BLink).  protein_id AT4G36520.1p  transcript_id AT4G36520.1  protein_id AT4G36520.1p  transcript_id AT4G36520.1  
At4g36530	chr4:017241482	0.0	C/17241482-17241518,17241256-17241394,17240982-17241152,17240663-17240903,17240495-17240586,17240120-17240405	AT4G36530.1  CDS  gene_syn AP22.96, AP22_96  go_component chloroplast|GO:0009507|18431481|IDA  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT5G19850.1); Has 14195 Blast hits to 14193 proteins in 1328 species: Archae - 104; Bacteria - 8969; Metazoa - 576; Fungi - 206; Plants - 507; Viruses - 5; Other Eukaryotes - 3828 (source: NCBI BLink).  protein_id AT4G36530.1p  transcript_id AT4G36530.1  protein_id AT4G36530.1p  transcript_id AT4G36530.1  
At4g36530	chr4:017241671	0.0	C/17241671-17241770,17241482-17241589,17241256-17241394,17240982-17241152,17240663-17240903,17240495-17240586,17240120-17240405	AT4G36530.2  CDS  gene_syn AP22.96, AP22_96  go_component chloroplast|GO:0009507|18431481|IDA  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT5G19850.1); Has 14231 Blast hits to 14229 proteins in 1328 species: Archae - 104; Bacteria - 8998; Metazoa - 576; Fungi - 206; Plants - 508; Viruses - 5; Other Eukaryotes - 3834 (source: NCBI BLink).  protein_id AT4G36530.2p  transcript_id AT4G36530.2  protein_id AT4G36530.2p  transcript_id AT4G36530.2  
At4g36540	chr4:017243699	0.0	W/17243699-17243989,17244075-17244254,17244347-17244553,17244638-17244778,17244870-17244965	AT4G36540.1  CDS  gene_syn AP22.3, AP22_3, BEE2, BR Enhanced Expression 2  gene BEE2  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product BEE2 (BR Enhanced Expression 2); DNA binding / transcription factor  note BR Enhanced Expression 2 (BEE2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT2G18300.2); Has 1151 Blast hits to 1151 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 26; Plants - 1105; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G36540.1p  transcript_id AT4G36540.1  protein_id AT4G36540.1p  transcript_id AT4G36540.1  
At4g36540	chr4:017243699	0.0	W/17243699-17243989,17244075-17244254,17244347-17244553,17244644-17244778,17244870-17244965	AT4G36540.2  CDS  gene_syn AP22.3, AP22_3, BEE2, BR Enhanced Expression 2  gene BEE2  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product BEE2 (BR Enhanced Expression 2); DNA binding / transcription factor  note BR Enhanced Expression 2 (BEE2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), WD40 repeat (InterPro:IPR001680), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT2G18300.1); Has 1190 Blast hits to 1190 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 29; Plants - 1133; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G36540.2p  transcript_id AT4G36540.2  protein_id AT4G36540.2p  transcript_id AT4G36540.2  
At4g36550	chr4:017247885	0.0	C/17247885-17247926,17247605-17247790,17247384-17247491,17247103-17247308,17245400-17247014	AT4G36550.1  CDS  gene_syn AP22.63, AP22_63  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  product binding / ubiquitin-protein ligase  note binding / ubiquitin-protein ligase; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein / U-box domain-containing family protein (TAIR:AT1G67530.2); Has 1283 Blast hits to 1233 proteins in 93 species: Archae - 0; Bacteria - 18; Metazoa - 86; Fungi - 23; Plants - 1033; Viruses - 3; Other Eukaryotes - 120 (source: NCBI BLink).  protein_id AT4G36550.1p  transcript_id AT4G36550.1  protein_id AT4G36550.1p  transcript_id AT4G36550.1  
At4g36560	chr4:017252657	0.0	W/17252657-17252989	AT4G36560.1  CDS  gene_syn AP22.48, AP22_48  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G36560.1p  transcript_id AT4G36560.1  protein_id AT4G36560.1p  transcript_id AT4G36560.1  
At4g36570	chr4:017254660	0.0	W/17254660-17254836	AT4G36570.1  CDS  gene_syn AP22.24, AP22_24, ARABIDOPSIS RAD-LIKE 3, ATRL3  gene ATRL3  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product ATRL3 (ARABIDOPSIS RAD-LIKE 3); DNA binding / transcription factor  note ARABIDOPSIS RAD-LIKE 3 (ATRL3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: rosette leaf; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), SANT, eukarya (InterPro:IPR017884); BEST Arabidopsis thaliana protein match is: ATRL6 (ARABIDOPSIS RAD-LIKE 6); transcription factor (TAIR:AT1G75250.2); Has 251 Blast hits to 251 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 74; Fungi - 0; Plants - 176; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G36570.1p  transcript_id AT4G36570.1  protein_id AT4G36570.1p  transcript_id AT4G36570.1  
At4g36580	chr4:017257958	0.0	W/17257958-17258236,17258387-17258482,17258590-17258700,17258794-17259103,17259213-17259303,17259476-17259770,17259850-17259998,17260130-17260661	AT4G36580.1  CDS  gene_syn AP22.32, AP22_32  go_component chloroplast|GO:0009507||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATPase activity|GO:0016887||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT2G18330.1); Has 24264 Blast hits to 20941 proteins in 1751 species: Archae - 824; Bacteria - 6330; Metazoa - 5933; Fungi - 2813; Plants - 1354; Viruses - 51; Other Eukaryotes - 6959 (source: NCBI BLink).  protein_id AT4G36580.1p  transcript_id AT4G36580.1  protein_id AT4G36580.1p  transcript_id AT4G36580.1  
At4g36590	chr4:017261857	0.0	C/17261857-17262189,17261146-17261559	AT4G36590.1  CDS  gene_syn AP22.88, AP22_88  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product MADS-box protein (AGL40)  note MADS-box protein (AGL40); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: flower, pollen tube; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL62 (Agamous-like 62); DNA binding / transcription factor (TAIR:AT5G60440.1); Has 3943 Blast hits to 3943 proteins in 530 species: Archae - 0; Bacteria - 0; Metazoa - 551; Fungi - 203; Plants - 3143; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT4G36590.1p  transcript_id AT4G36590.1  protein_id AT4G36590.1p  transcript_id AT4G36590.1  
At4g36600	chr4:017263666	0.0	W/17263666-17263880,17264122-17264968	AT4G36600.1  CDS  gene_syn AP22.17, AP22_17  go_process embryonic development ending in seed dormancy|GO:0009793||ISS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein (InterPro:IPR004238); BEST Arabidopsis thaliana protein match is: late embryogenesis abundant domain-containing protein / LEA domain-containing protein (TAIR:AT2G18340.1); Has 4703 Blast hits to 2009 proteins in 504 species: Archae - 12; Bacteria - 1635; Metazoa - 512; Fungi - 269; Plants - 1212; Viruses - 45; Other Eukaryotes - 1018 (source: NCBI BLink).  protein_id AT4G36600.1p  transcript_id AT4G36600.1  protein_id AT4G36600.1p  transcript_id AT4G36600.1  
At4g36610	chr4:017266624	0.0	C/17266624-17267274,17265928-17266017,17265780-17265847,17265545-17265689	AT4G36610.1  CDS  gene_syn AP22.94, AP22_94  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT2G18360.1); Has 4856 Blast hits to 4854 proteins in 765 species: Archae - 27; Bacteria - 2836; Metazoa - 386; Fungi - 32; Plants - 256; Viruses - 0; Other Eukaryotes - 1319 (source: NCBI BLink).  protein_id AT4G36610.1p  transcript_id AT4G36610.1  protein_id AT4G36610.1p  transcript_id AT4G36610.1  
At4g36620	chr4:017269375	0.0	C/17269375-17269662,17268906-17269253	AT4G36620.1  CDS  gene_syn AP22.1, AP22_1  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product zinc finger (GATA type) family protein  note zinc finger (GATA type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: MNP (MONOPOLE); transcription factor (TAIR:AT3G50870.1); Has 1419 Blast hits to 1358 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 332; Fungi - 590; Plants - 419; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT4G36620.1p  transcript_id AT4G36620.1  protein_id AT4G36620.1p  transcript_id AT4G36620.1  
At4g36630	chr4:017276110	0.0	C/17276110-17276524,17275822-17276033,17275603-17275734,17275361-17275504,17275050-17275162,17274507-17274942,17273988-17274317,17273593-17273814,17273266-17273508,17272559-17273014,17272369-17272467,17272088-17272288	AT4G36630.1  CDS  gene_syn AP22.59, AP22_59, EMB2754, EMBRYO DEFECTIVE 2754  gene EMB2754  go_function small GTPase regulator activity|GO:0005083||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product EMB2754 (EMBRYO DEFECTIVE 2754); binding / small GTPase regulator  note EMBRYO DEFECTIVE 2754 (EMB2754); FUNCTIONS IN: small GTPase regulator activity, binding; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Citron-like (InterPro:IPR001180), Armadillo-type fold (InterPro:IPR016024); Has 633 Blast hits to 475 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 333; Fungi - 187; Plants - 36; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT4G36630.1p  transcript_id AT4G36630.1  protein_id AT4G36630.1p  transcript_id AT4G36630.1  
At4g36635	chr4:017276701	0.0	C/17276701-17276774	AT4G36635.1  tRNA  gene_syn 68071.TRNA-ILE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ile (anticodon: TAT)  transcript_id AT4G36635.1  
At4g36640	chr4:017278125	0.0	C/17278125-17278181,17277926-17278024,17277596-17277841,17277187-17277489	AT4G36640.2  CDS  gene_syn AP22.47, AP22_47  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  note SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT1G75170.2); Has 1180 Blast hits to 1180 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 395; Fungi - 383; Plants - 269; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).  protein_id AT4G36640.2p  transcript_id AT4G36640.2  protein_id AT4G36640.2p  transcript_id AT4G36640.2  
At4g36640	chr4:017278388	0.0	C/17278388-17278447,17278125-17278301,17277926-17278024,17277596-17277841,17277187-17277489	AT4G36640.1  CDS  gene_syn AP22.47, AP22_47  go_component intracellular|GO:0005622||IEA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||IEA  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  note SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT1G75170.2); Has 1793 Blast hits to 1793 proteins in 174 species: Archae - 0; Bacteria - 0; Metazoa - 698; Fungi - 466; Plants - 444; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink).  protein_id AT4G36640.1p  transcript_id AT4G36640.1  protein_id AT4G36640.1p  transcript_id AT4G36640.1  
At4g36648	chr4:017280528	0.0	C/17280528-17282730	AT4G36648.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G36648.1  
At4g36650	chr4:017284946	0.0	C/17284946-17285527,17284245-17284403,17283283-17284053	AT4G36650.1  CDS  gene_syn AP22.23, AP22_23, ATPBRP, PLANT-SPECIFIC TFIIB-RELATED PROTEIN  gene ATPBRP  function Encodes a protein with similarity to the general transcription factor TFIIB. pBRP binds rDNA sequences in vitro. pBRP has been localized to the outer face of the plastid membrane with GFP fusion however, under conditions of proteosome inhibition it is found in the nucleus.  go_process transcription initiation|GO:0006352||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process translational initiation|GO:0006413||IEA  go_component plastid outer membrane|GO:0009527|12697827|IDA  go_function rDNA binding|GO:0000182|18668124|IDA  go_function RNA polymerase II transcription factor activity|GO:0003702||ISS  product ATPBRP (PLANT-SPECIFIC TFIIB-RELATED PROTEIN); RNA polymerase II transcription factor/ rDNA binding  note PLANT-SPECIFIC TFIIB-RELATED PROTEIN (ATPBRP); FUNCTIONS IN: RNA polymerase II transcription factor activity, rDNA binding; INVOLVED IN: translational initiation, regulation of transcription, DNA-dependent, transcription initiation; LOCATED IN: plastid outer membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: TFIIB (TRANSCRIPTION FACTOR II B); RNA polymerase II transcription factor/ protein binding / transcription regulator/ translation initiation factor/ zinc ion binding (TAIR:AT2G41630.1); Has 1168 Blast hits to 1167 proteins in 248 species: Archae - 338; Bacteria - 0; Metazoa - 206; Fungi - 172; Plants - 97; Viruses - 3; Other Eukaryotes - 352 (source: NCBI BLink).  protein_id AT4G36650.1p  transcript_id AT4G36650.1  protein_id AT4G36650.1p  transcript_id AT4G36650.1  
At4g36650	chr4:017284946	0.0	C/17284946-17285527,17284245-17284403,17283895-17284053,17283600-17283809	AT4G36650.2  CDS  gene_syn AP22.23, AP22_23, ATPBRP, PLANT-SPECIFIC TFIIB-RELATED PROTEIN  gene ATPBRP  function Encodes a protein with similarity to the general transcription factor TFIIB. pBRP binds rDNA sequences in vitro. pBRP has been localized to the outer face of the plastid membrane with GFP fusion however, under conditions of proteosome inhibition it is found in the nucleus.  go_process transcription initiation|GO:0006352||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process translational initiation|GO:0006413||IEA  go_component plastid outer membrane|GO:0009527|12697827|IDA  go_function rDNA binding|GO:0000182|18668124|IDA  go_function RNA polymerase II transcription factor activity|GO:0003702||ISS  product ATPBRP (PLANT-SPECIFIC TFIIB-RELATED PROTEIN); RNA polymerase II transcription factor/ rDNA binding  note PLANT-SPECIFIC TFIIB-RELATED PROTEIN (ATPBRP); FUNCTIONS IN: RNA polymerase II transcription factor activity, rDNA binding; INVOLVED IN: translational initiation, regulation of transcription, DNA-dependent, transcription initiation; LOCATED IN: plastid outer membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: TFIIB (TRANSCRIPTION FACTOR II B); RNA polymerase II transcription factor/ protein binding / transcription regulator/ translation initiation factor/ zinc ion binding (TAIR:AT2G41630.1); Has 948 Blast hits to 947 proteins in 229 species: Archae - 320; Bacteria - 0; Metazoa - 181; Fungi - 114; Plants - 85; Viruses - 3; Other Eukaryotes - 245 (source: NCBI BLink).  protein_id AT4G36650.2p  transcript_id AT4G36650.2  protein_id AT4G36650.2p  transcript_id AT4G36650.2  
At4g36660	chr4:017287021	0.0	C/17287021-17287281,17286710-17286925,17285953-17286015	AT4G36660.1  CDS  gene_syn AP22.12, AP22_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1195 (InterPro:IPR010608); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65650.1); Has 43 Blast hits to 43 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G36660.1p  transcript_id AT4G36660.1  protein_id AT4G36660.1p  transcript_id AT4G36660.1  
At4g36670	chr4:017289384	0.0	C/17289384-17289483,17287680-17289061	AT4G36670.1  CDS  gene_syn AP22.86, AP22_86  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product mannitol transporter, putative  note mannitol transporter, putative; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Sugar/inositol transporter (InterPro:IPR003663), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: mannitol transporter, putative (TAIR:AT2G18480.1); Has 27696 Blast hits to 27298 proteins in 1550 species: Archae - 398; Bacteria - 13408; Metazoa - 4886; Fungi - 5698; Plants - 1582; Viruses - 2; Other Eukaryotes - 1722 (source: NCBI BLink).  protein_id AT4G36670.1p  transcript_id AT4G36670.1  protein_id AT4G36670.1p  transcript_id AT4G36670.1  
At4g36680	chr4:017292479	0.0	C/17292479-17293717	AT4G36680.1  CDS  gene_syn AP22.65, AP22_65  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G18520.1); Has 13901 Blast hits to 4968 proteins in 155 species: Archae - 3; Bacteria - 0; Metazoa - 227; Fungi - 101; Plants - 13091; Viruses - 0; Other Eukaryotes - 479 (source: NCBI BLink).  protein_id AT4G36680.1p  transcript_id AT4G36680.1  protein_id AT4G36680.1p  transcript_id AT4G36680.1  
At4g36690	chr4:017297496	0.0	C/17297496-17297609,17297028-17297314,17296830-17296928,17296660-17296733,17296150-17296226,17296030-17296077,17295885-17295944,17295731-17295791,17295533-17295645,17294966-17295412,17294591-17294839	AT4G36690.2  CDS  gene_syn AP22.29, AP22_29, ATU2AF65A  gene ATU2AF65A  go_component nucleus|GO:0005634||IEA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|9852132|ISS  go_function RNA binding|GO:0003723||ISS  product ATU2AF65A; RNA binding / nucleic acid binding / nucleotide binding  note ATU2AF65A; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, defense response to bacterium; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), U2 snRNP auxilliary factor, large subunit, splicing factor (InterPro:IPR006529); BEST Arabidopsis thaliana protein match is: U2 snRNP auxiliary factor large subunit, putative (TAIR:AT1G60900.1); Has 58125 Blast hits to 27976 proteins in 1183 species: Archae - 55; Bacteria - 3618; Metazoa - 33368; Fungi - 6029; Plants - 4325; Viruses - 271; Other Eukaryotes - 10459 (source: NCBI BLink).  protein_id AT4G36690.2p  transcript_id AT4G36690.2  protein_id AT4G36690.2p  transcript_id AT4G36690.2  
At4g36690	chr4:017297496	0.0	C/17297496-17297609,17297028-17297314,17296830-17296928,17296660-17296733,17296150-17296226,17296030-17296077,17295885-17295944,17295731-17295791,17295533-17295645,17294966-17295412,17294704-17294839,17294363-17294430,17294139-17294276	AT4G36690.1  CDS  gene_syn AP22.29, AP22_29, ATU2AF65A  gene ATU2AF65A  go_component nucleus|GO:0005634||IEA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|9852132|ISS  go_function RNA binding|GO:0003723||ISS  product ATU2AF65A; RNA binding / nucleic acid binding / nucleotide binding  note ATU2AF65A; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, defense response to bacterium; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), U2 snRNP auxilliary factor, large subunit, splicing factor (InterPro:IPR006529); BEST Arabidopsis thaliana protein match is: U2 snRNP auxiliary factor large subunit, putative (TAIR:AT1G60900.1); Has 58634 Blast hits to 28369 proteins in 1184 species: Archae - 55; Bacteria - 3616; Metazoa - 33617; Fungi - 6101; Plants - 4473; Viruses - 271; Other Eukaryotes - 10501 (source: NCBI BLink).  protein_id AT4G36690.1p  transcript_id AT4G36690.1  protein_id AT4G36690.1p  transcript_id AT4G36690.1  
At4g36690	chr4:017297496	0.0	C/17297496-17297609,17297028-17297314,17296830-17296928,17296660-17296733,17296150-17296226,17296030-17296077,17295885-17295944,17295731-17295791,17295533-17295645,17294966-17295412,17294704-17294839,17294422-17294603	AT4G36690.3  CDS  gene_syn AP22.29, AP22_29, ATU2AF65A  gene ATU2AF65A  go_component nucleus|GO:0005634||IEA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|9852132|ISS  go_function RNA binding|GO:0003723||ISS  product ATU2AF65A; RNA binding / nucleic acid binding / nucleotide binding  note ATU2AF65A; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, defense response to bacterium; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), U2 snRNP auxilliary factor, large subunit, splicing factor (InterPro:IPR006529); BEST Arabidopsis thaliana protein match is: U2 snRNP auxiliary factor large subunit, putative (TAIR:AT1G60900.1); Has 58159 Blast hits to 28001 proteins in 1186 species: Archae - 55; Bacteria - 3617; Metazoa - 33384; Fungi - 6024; Plants - 4336; Viruses - 274; Other Eukaryotes - 10469 (source: NCBI BLink).  protein_id AT4G36690.3p  transcript_id AT4G36690.3  protein_id AT4G36690.3p  transcript_id AT4G36690.3  
At4g36700	chr4:017300013	0.0	C/17300013-17300337,17299749-17299927,17299583-17299663,17298443-17299426	AT4G36700.1  CDS  gene_syn AP22.80, AP22_80  go_component endomembrane system|GO:0012505||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process biological_process|GO:0008150||ND  go_function nutrient reservoir activity|GO:0045735||ISS  product cupin family protein  note cupin family protein; FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: seed; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cupin family protein (TAIR:AT2G18540.1); Has 24566 Blast hits to 7767 proteins in 626 species: Archae - 33; Bacteria - 1512; Metazoa - 12314; Fungi - 1899; Plants - 799; Viruses - 447; Other Eukaryotes - 7562 (source: NCBI BLink).  protein_id AT4G36700.1p  transcript_id AT4G36700.1  protein_id AT4G36700.1p  transcript_id AT4G36700.1  
At4g36710	chr4:017306060	0.0	W/17306060-17307520	AT4G36710.1  CDS  gene_syn AP22.56, AP22_56  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: scarecrow-like transcription factor 6 (SCL6) (TAIR:AT4G00150.1); Has 1204 Blast hits to 1192 proteins in 182 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1200; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G36710.1p  transcript_id AT4G36710.1  protein_id AT4G36710.1p  transcript_id AT4G36710.1  
At4g36720	chr4:017307769	0.0	W/17307769-17307831,17308117-17308175,17308589-17308686,17308839-17308890,17309052-17309115,17309221-17309316,17309398-17309470,17309571-17309668	AT4G36720.1  CDS  gene_syn AP22.45, AP22_45, HVA22-LIKE PROTEIN K, HVA22K  gene HVA22K  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product HVA22K (HVA22-LIKE PROTEIN K)  note HVA22-LIKE PROTEIN K (HVA22K); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TB2/DP1 and HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: ATHVA22B (TAIR:AT5G62490.1); Has 1069 Blast hits to 1068 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 559; Fungi - 149; Plants - 303; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT4G36720.1p  transcript_id AT4G36720.1  protein_id AT4G36720.1p  transcript_id AT4G36720.1  
At4g36730	chr4:017311693	0.0	C/17311693-17311752,17311559-17311603,17311358-17311447,17311161-17311250,17310902-17311041,17310758-17310815,17310631-17310673,17310423-17310544,17310257-17310334,17310047-17310172,17309850-17309939	AT4G36730.2  CDS  gene_syn AP22.21, AP22_21, GBF1  gene GBF1  function member of a gene family encoding basic leucine zipper proteins (GBFs) which bind the G-box  go_process transcription, DNA-dependent|GO:0006351||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component cytoplasm|GO:0005737|9193069|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function sequence-specific DNA binding|GO:0043565|1373374|IDA  product GBF1; sequence-specific DNA binding / transcription factor  note GBF1; FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, transcription, DNA-dependent, regulation of transcription; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), G-box binding, MFMR (InterPro:IPR012900), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT2G35530.1); Has 3081 Blast hits to 3015 proteins in 270 species: Archae - 6; Bacteria - 76; Metazoa - 1295; Fungi - 353; Plants - 943; Viruses - 135; Other Eukaryotes - 273 (source: NCBI BLink).  protein_id AT4G36730.2p  transcript_id AT4G36730.2  protein_id AT4G36730.2p  transcript_id AT4G36730.2  
At4g36730	chr4:017311693	0.0	C/17311693-17311752,17311559-17311603,17311358-17311447,17311161-17311250,17310902-17311041,17310758-17310815,17310631-17310679,17310423-17310544,17310257-17310334,17310047-17310172,17309850-17309939	AT4G36730.1  CDS  gene_syn AP22.21, AP22_21, GBF1  gene GBF1  function member of a gene family encoding basic leucine zipper proteins (GBFs) which bind the G-box  go_process transcription, DNA-dependent|GO:0006351||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component cytoplasm|GO:0005737|9193069|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function sequence-specific DNA binding|GO:0043565|1373374|IDA  product GBF1; sequence-specific DNA binding / transcription factor  note GBF1; FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding; INVOLVED IN: transcription, DNA-dependent, regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), G-box binding, MFMR (InterPro:IPR012900), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT2G35530.1); Has 3095 Blast hits to 3031 proteins in 277 species: Archae - 8; Bacteria - 78; Metazoa - 1296; Fungi - 354; Plants - 934; Viruses - 135; Other Eukaryotes - 290 (source: NCBI BLink).  protein_id AT4G36730.1p  transcript_id AT4G36730.1  protein_id AT4G36730.1p  transcript_id AT4G36730.1  
At4g36740	chr4:017316233	0.0	C/17316233-17316314,17315559-17315884,17314649-17314891	AT4G36740.1  CDS  gene_syn AP22.8, AP22_8, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40, ATHB40, HB-5  gene ATHB40  function Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to auxin stimulus|GO:0009733|15567172|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40); DNA binding / transcription factor  note ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40 (ATHB40); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to auxin stimulus, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: fruit, flower, root; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: HB-2 (HOMEOBOX-2); DNA binding / transcription factor (TAIR:AT2G18550.1); Has 6908 Blast hits to 6905 proteins in 390 species: Archae - 0; Bacteria - 0; Metazoa - 5289; Fungi - 146; Plants - 1381; Viruses - 4; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT4G36740.1p  transcript_id AT4G36740.1  protein_id AT4G36740.1p  transcript_id AT4G36740.1  
At4g36750	chr4:017324642	0.0	W/17324642-17325234,17325987-17326215	AT4G36750.1  CDS  gene_syn AP22.84, AP22_84  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process negative regulation of transcription|GO:0016481||IEA  go_function FMN binding|GO:0010181||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  product quinone reductase family protein  note quinone reductase family protein; FUNCTIONS IN: oxidoreductase activity, FMN binding; INVOLVED IN: negative regulation of transcription; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Flavoprotein WrbA (InterPro:IPR010089), Flavodoxin/nitric oxide synthase (InterPro:IPR008254); BEST Arabidopsis thaliana protein match is: FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1); FMN binding / oxidoreductase, acting on NADH or NADPH, quinone or similar compound as acceptor (TAIR:AT5G54500.1); Has 2178 Blast hits to 2176 proteins in 677 species: Archae - 37; Bacteria - 1574; Metazoa - 2; Fungi - 180; Plants - 117; Viruses - 1; Other Eukaryotes - 267 (source: NCBI BLink).  protein_id AT4G36750.1p  transcript_id AT4G36750.1  protein_id AT4G36750.1p  transcript_id AT4G36750.1  
At4g36760	chr4:017326688	0.0	W/17326688-17326780,17326920-17326983,17327083-17327222,17327312-17327596,17327675-17328070,17328155-17328241,17328327-17328391,17328500-17328566,17328643-17328777,17328878-17328958,17329056-17329110,17329206-17329310,17329440-17329511,17329600-17329724,17329812-17329979	AT4G36760.1  CDS  gene_syn AMINOPEPTIDASE P1, AP22.64, AP22_64, APP1, ATAPP1  gene ATAPP1  function Arabidopsis aminopeptidase P1  go_component plasma membrane|GO:0005886|11891249|IDA  go_process auxin polar transport|GO:0009926|11891249|TAS  go_function aminopeptidase activity|GO:0004177|11891249|IDA  go_function N-1-naphthylphthalamic acid binding|GO:0010013|11891249|IDA  product ATAPP1; N-1-naphthylphthalamic acid binding / aminopeptidase  note ATAPP1; FUNCTIONS IN: aminopeptidase activity, N-1-naphthylphthalamic acid binding; INVOLVED IN: auxin polar transport; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site (InterPro:IPR001131), Peptidase M24, structural domain (InterPro:IPR000994), Creatinase (InterPro:IPR000587); BEST Arabidopsis thaliana protein match is: aminopeptidase/ hydrolase (TAIR:AT3G05350.1); Has 6780 Blast hits to 6752 proteins in 1286 species: Archae - 158; Bacteria - 3035; Metazoa - 315; Fungi - 174; Plants - 62; Viruses - 0; Other Eukaryotes - 3036 (source: NCBI BLink).  protein_id AT4G36760.1p  transcript_id AT4G36760.1  protein_id AT4G36760.1p  transcript_id AT4G36760.1  
At4g36770	chr4:017330217	0.0	C/17330217-17331590	AT4G36770.1  CDS  gene_syn AP22.28, AP22_28  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glycosyltransferase/ transferase, transferring glycosyl groups  note UDP-glycosyltransferase/ transferase, transferring glycosyl groups; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, sepal, pedicel, flower; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT72E1 (UDP-glucosyl transferase 72E1); UDP-glycosyltransferase/ coniferyl-alcohol glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT3G50740.1); Has 5057 Blast hits to 5033 proteins in 321 species: Archae - 0; Bacteria - 164; Metazoa - 2154; Fungi - 15; Plants - 2628; Viruses - 69; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT4G36770.1p  transcript_id AT4G36770.1  protein_id AT4G36770.1p  transcript_id AT4G36770.1  
At4g36780	chr4:017333967	0.0	C/17333967-17334212,17332989-17333540	AT4G36780.1  CDS  gene_syn AP22.34, AP22_34  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transcription regulator activity|GO:0030528|11970900|TAS  product transcription regulator  note transcription regulator; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BZR1, transcriptional repressor (InterPro:IPR008540); BEST Arabidopsis thaliana protein match is: BES1 (BRI1-EMS-SUPPRESSOR 1); protein binding / transcription factor/ transcription regulator (TAIR:AT1G19350.6); Has 110 Blast hits to 110 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 108; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G36780.1p  transcript_id AT4G36780.1  protein_id AT4G36780.1p  transcript_id AT4G36780.1  
At4g36790	chr4:017336360	0.0	W/17336360-17336460,17336685-17336982,17337055-17337350,17337433-17337605,17337703-17338304	AT4G36790.1  CDS  gene_syn AP22.91, AP22_91  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product transporter-related  note transporter-related; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: carbohydrate transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT2G18590.1); Has 7659 Blast hits to 7630 proteins in 1073 species: Archae - 181; Bacteria - 5576; Metazoa - 462; Fungi - 329; Plants - 169; Viruses - 2; Other Eukaryotes - 940 (source: NCBI BLink).  protein_id AT4G36790.1p  transcript_id AT4G36790.1  protein_id AT4G36790.1p  transcript_id AT4G36790.1  
At4g36791	chr4:017338871	0.0	C/17338871-17339077	AT4G36791.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G36791.1p  transcript_id AT4G36791.1  protein_id AT4G36791.1p  transcript_id AT4G36791.1  
At4g36800	chr4:017342037	0.0	C/17342037-17342148,17341841-17341949,17341668-17341746,17341454-17341570,17341237-17341374	AT4G36800.1  CDS  gene_syn AP22.40, AP22_40, RCE1, RUB1 CONJUGATING ENZYME 1  gene RCE1  function RUB1 conjugating enzyme that conjugates CUL1 and is involved in auxin response and embryogenesis. RCE1 protein physically interacts with RBX1, which may be the E3 for CUL1.  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733|12682009|IMP  go_process embryonic development|GO:0009790|12682009|IGI  go_function small conjugating protein ligase activity|GO:0019787|10611386|IDA  go_function small conjugating protein ligase activity|GO:0019787||ISS  go_function NEDD8 ligase activity|GO:0019788|12682009|TAS  product RCE1 (RUB1 CONJUGATING ENZYME 1); NEDD8 ligase/ small conjugating protein ligase  note RUB1 CONJUGATING ENZYME 1 (RCE1); FUNCTIONS IN: NEDD8 ligase activity, small conjugating protein ligase activity; INVOLVED IN: embryonic development, response to auxin stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), RUB1 conjugating enzyme Ubc12 (InterPro:IPR015580); BEST Arabidopsis thaliana protein match is: RUB1-conjugating enzyme, putative (TAIR:AT2G18600.1); Has 276 Blast hits to 276 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 129; Fungi - 62; Plants - 67; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT4G36800.1p  transcript_id AT4G36800.1  protein_id AT4G36800.1p  transcript_id AT4G36800.1  
At4g36800	chr4:017342037	0.0	C/17342037-17342148,17341841-17341949,17341668-17341746,17341454-17341570,17341237-17341374	AT4G36800.2  CDS  gene_syn AP22.40, AP22_40, RCE1, RUB1 CONJUGATING ENZYME 1  gene RCE1  function RUB1 conjugating enzyme that conjugates CUL1 and is involved in auxin response and embryogenesis. RCE1 protein physically interacts with RBX1, which may be the E3 for CUL1.  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733|12682009|IMP  go_process embryonic development|GO:0009790|12682009|IGI  go_function small conjugating protein ligase activity|GO:0019787|10611386|IDA  go_function small conjugating protein ligase activity|GO:0019787||ISS  go_function NEDD8 ligase activity|GO:0019788|12682009|TAS  product RCE1 (RUB1 CONJUGATING ENZYME 1); NEDD8 ligase/ small conjugating protein ligase  note RUB1 CONJUGATING ENZYME 1 (RCE1); FUNCTIONS IN: NEDD8 ligase activity, small conjugating protein ligase activity; INVOLVED IN: embryonic development, response to auxin stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), RUB1 conjugating enzyme Ubc12 (InterPro:IPR015580); BEST Arabidopsis thaliana protein match is: RUB1-conjugating enzyme, putative (TAIR:AT2G18600.1).  protein_id AT4G36800.2p  transcript_id AT4G36800.2  protein_id AT4G36800.2p  transcript_id AT4G36800.2  
At4g36810	chr4:017343513	0.0	W/17343513-17344628	AT4G36810.1  CDS  gene_syn GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1, GGPS1  gene GGPS1  function Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|10759500|IDA  go_component etioplast|GO:0009513|10759500|IDA  go_process isoprenoid biosynthetic process|GO:0008299|10759500|TAS  go_function farnesyltranstransferase activity|GO:0004311|10759500|IDA  product GGPS1 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1); farnesyltranstransferase  note GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1 (GGPS1); FUNCTIONS IN: farnesyltranstransferase activity; INVOLVED IN: isoprenoid biosynthetic process; LOCATED IN: etioplast, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase-related (InterPro:IPR017446), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative (TAIR:AT2G18620.1); Has 11638 Blast hits to 11634 proteins in 1682 species: Archae - 213; Bacteria - 4928; Metazoa - 240; Fungi - 307; Plants - 279; Viruses - 6; Other Eukaryotes - 5665 (source: NCBI BLink).  protein_id AT4G36810.1p  transcript_id AT4G36810.1  protein_id AT4G36810.1p  transcript_id AT4G36810.1  
At4g36820	chr4:017346889	0.0	W/17346889-17347446,17347536-17347994	AT4G36820.1  CDS  gene_syn AP22.5, AP22_5  product unknown protein  note unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF607 (InterPro:IPR006769); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23790.1); Has 270 Blast hits to 268 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 41; Plants - 71; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT4G36820.1p  transcript_id AT4G36820.1  protein_id AT4G36820.1p  transcript_id AT4G36820.1  
At4g36830	chr4:017349511	0.0	W/17349511-17350380	AT4G36830.1  CDS  gene_syn AP22.81, AP22_81  go_component integral to membrane|GO:0016021||IEA  go_component integral to membrane|GO:0016021||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product GNS1/SUR4 membrane family protein  note GNS1/SUR4 membrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: GNS1/SUR4 membrane protein (InterPro:IPR002076); BEST Arabidopsis thaliana protein match is: GNS1/SUR4 membrane family protein (TAIR:AT1G75000.1); Has 99 Blast hits to 99 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 24; Plants - 39; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT4G36830.1p  transcript_id AT4G36830.1  protein_id AT4G36830.1p  transcript_id AT4G36830.1  
At4g36840	chr4:017352166	0.0	W/17352166-17352882	AT4G36840.1  CDS  gene_syn AP22.62, AP22_62  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT3G24610.1); Has 277 Blast hits to 269 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 277; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G36840.1p  transcript_id AT4G36840.1  protein_id AT4G36840.1p  transcript_id AT4G36840.1  
At4g36850	chr4:017355596	0.0	C/17355596-17355822,17355464-17355506,17355349-17355375,17355077-17355175,17354892-17355004,17354376-17354565,17354185-17354286,17354002-17354097,17353886-17353906,17353627-17353776,17353415-17353525	AT4G36850.1  CDS  gene_syn AP22.27, AP22_27  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Cystinosin/ERS1p repeat (InterPro:IPR006603); BEST Arabidopsis thaliana protein match is: PQ-loop repeat family protein / transmembrane family protein (TAIR:AT2G41050.1); Has 599 Blast hits to 441 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 197; Fungi - 311; Plants - 38; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT4G36850.1p  transcript_id AT4G36850.1  protein_id AT4G36850.1p  transcript_id AT4G36850.1  
At4g36860	chr4:017361079	0.0	C/17361079-17361189,17360901-17361006,17360440-17360785,17360187-17360307,17360021-17360104,17359801-17359920,17359490-17359702,17359333-17359395,17359138-17359256,17358992-17359050,17358580-17358899	AT4G36860.1  CDS  gene_syn AP22.33, AP22_33  go_component plasma membrane|GO:0005886|17317660|IDA  go_function zinc ion binding|GO:0008270||IEA  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781), Ubiquitin interacting motif (InterPro:IPR003903); BEST Arabidopsis thaliana protein match is: DA1 (DA 1); ubiquitin binding (TAIR:AT1G19270.1); Has 1546 Blast hits to 1204 proteins in 114 species: Archae - 0; Bacteria - 2; Metazoa - 1348; Fungi - 12; Plants - 88; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT4G36860.1p  transcript_id AT4G36860.1  protein_id AT4G36860.1p  transcript_id AT4G36860.1  
At4g36870	chr4:017369423	0.0	W/17369423-17370601,17371448-17371839,17372311-17372371,17373136-17373723	AT4G36870.1  CDS  gene_syn AP22.90, AP22_90, BEL1-LIKE HOMEODOMAIN 2, BLH2, SAW1, SAWTOOTH 1  gene BLH2  function Encodes a member of the BEL family of homeodomain proteins. Plants doubly mutant for saw1/saw2 (blh2/blh4) have serrated leaves. BP is expressed in the serrated leaves, therefore saw1/saw2 may act redundantly to repress BP in leaves.  go_component nucleus|GO:0005634||IEA  go_process leaf morphogenesis|GO:0009965|17873098|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product BLH2 (BEL1-LIKE HOMEODOMAIN 2); DNA binding / transcription factor  note BEL1-LIKE HOMEODOMAIN 2 (BLH2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BLH4 (BEL1-LIKE HOMEODOMAIN 4); DNA binding / transcription factor (TAIR:AT2G23760.3); Has 5090 Blast hits to 5006 proteins in 297 species: Archae - 0; Bacteria - 5; Metazoa - 2443; Fungi - 277; Plants - 2055; Viruses - 0; Other Eukaryotes - 310 (source: NCBI BLink).  protein_id AT4G36870.1p  transcript_id AT4G36870.1  protein_id AT4G36870.1p  transcript_id AT4G36870.1  
At4g36870	chr4:017369423	0.0	W/17369423-17370601,17371448-17371839,17372311-17372371,17373136-17373723	AT4G36870.2  CDS  gene_syn AP22.90, AP22_90, BEL1-LIKE HOMEODOMAIN 2, BLH2, SAW1, SAWTOOTH 1  gene BLH2  function Encodes a member of the BEL family of homeodomain proteins. Plants doubly mutant for saw1/saw2 (blh2/blh4) have serrated leaves. BP is expressed in the serrated leaves, therefore saw1/saw2 may act redundantly to repress BP in leaves.  go_component nucleus|GO:0005634||IEA  go_process leaf morphogenesis|GO:0009965|17873098|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product BLH2 (BEL1-LIKE HOMEODOMAIN 2); DNA binding / transcription factor  note BEL1-LIKE HOMEODOMAIN 2 (BLH2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BLH4 (BEL1-LIKE HOMEODOMAIN 4); DNA binding / transcription factor (TAIR:AT2G23760.3); Has 5090 Blast hits to 5006 proteins in 297 species: Archae - 0; Bacteria - 5; Metazoa - 2443; Fungi - 277; Plants - 2055; Viruses - 0; Other Eukaryotes - 310 (source: NCBI BLink).  protein_id AT4G36870.2p  transcript_id AT4G36870.2  protein_id AT4G36870.2p  transcript_id AT4G36870.2  
At4g36880	chr4:017375682	0.0	C/17375682-17376180,17375266-17375501,17375032-17375172,17374692-17374946	AT4G36880.1  CDS  gene_syn AP22.67, AP22_67, CP1, CYSTEINE PROTEINASE1  gene CP1  go_component endomembrane system|GO:0012505||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_process proteolysis|GO:0006508||ISS  go_process response to gibberellin stimulus|GO:0009739|17449805|TAS  go_process response to red light|GO:0010114|17449805|IEP  go_function cysteine-type peptidase activity|GO:0008234||ISS  product CP1 (CYSTEINE PROTEINASE1); cysteine-type endopeptidase/ cysteine-type peptidase  note CYSTEINE PROTEINASE1 (CP1); FUNCTIONS IN: cysteine-type peptidase activity, cysteine-type endopeptidase activity; INVOLVED IN: proteolysis, response to gibberellin stimulus, response to red light; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: cysteine proteinase, putative / thiol protease, putative (TAIR:AT5G43060.1); Has 6185 Blast hits to 6131 proteins in 587 species: Archae - 29; Bacteria - 108; Metazoa - 2838; Fungi - 10; Plants - 1224; Viruses - 124; Other Eukaryotes - 1852 (source: NCBI BLink).  protein_id AT4G36880.1p  transcript_id AT4G36880.1  protein_id AT4G36880.1p  transcript_id AT4G36880.1  
At4g36890	chr4:017380891	0.0	C/17380891-17381627,17380218-17380790,17379631-17379898	AT4G36890.1  CDS  gene_syn AP22.51, AP22_51, IRX14, irregular xylem 14  gene IRX14  function The IRX14 gene encodes a putative family 43 glycosyl transferase that contributes to xylan biosynthesis. It was identified based on its gene expression co-variance with the IRX3 gene involved in secondary cell wall synthesis. A biochemical assay using the irx14 mutant indicates that IRX14 might function in xylose chain elongation.  go_component membrane|GO:0016020||IEA  go_process xylem and phloem pattern formation|GO:0010051|17944810|IMP  go_process fruit development|GO:0010154|17944810|IMP  go_process glucuronoxylan biosynthetic process|GO:0010417|17944810|IMP  go_process shoot development|GO:0048367|17944810|IMP  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function xylosyltransferase activity|GO:0042285|17944810|IMP  product IRX14 (irregular xylem 14); transferase, transferring glycosyl groups / xylosyltransferase  note irregular xylem 14 (IRX14); FUNCTIONS IN: xylosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: xylem and phloem pattern formation, shoot development, fruit development, glucuronoxylan biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 43 (InterPro:IPR005027); BEST Arabidopsis thaliana protein match is: glycosyl transferase family 43 protein (TAIR:AT5G67230.1); Has 516 Blast hits to 516 proteins in 78 species: Archae - 0; Bacteria - 2; Metazoa - 359; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT4G36890.1p  transcript_id AT4G36890.1  protein_id AT4G36890.1p  transcript_id AT4G36890.1  
At4g36900	chr4:017389015	0.0	W/17389015-17389605	AT4G36900.1  CDS  gene_syn AP22.2, AP22_2, RAP2.10, related to AP2 10  gene RAP2.10  function encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.10). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.9 and RAP2.1.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677|9192694|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9192694|TAS  product RAP2.10 (related to AP2 10); DNA binding / transcription factor  note related to AP2 10 (RAP2.10); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT2G23340.1); Has 3730 Blast hits to 3661 proteins in 203 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 3718; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT4G36900.1p  transcript_id AT4G36900.1  protein_id AT4G36900.1p  transcript_id AT4G36900.1  
At4g36910	chr4:017393012	0.0	C/17393012-17393218,17392537-17392624,17392374-17392438,17392221-17392269,17391906-17391958,17391348-17391463,17391193-17391250,17391016-17391090	AT4G36910.1  CDS  gene_syn AP22.61, AP22_61, CDCP2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, LEJ2, LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2  gene LEJ2  function Has a cystathionine Beta-synthase domain.  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2)  note LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2 (LEJ2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: LEJ1 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1) (TAIR:AT4G34120.1); Has 4926 Blast hits to 4510 proteins in 999 species: Archae - 766; Bacteria - 3132; Metazoa - 239; Fungi - 96; Plants - 84; Viruses - 0; Other Eukaryotes - 609 (source: NCBI BLink).  protein_id AT4G36910.1p  transcript_id AT4G36910.1  protein_id AT4G36910.1p  transcript_id AT4G36910.1  
At4g36920	chr4:017400998	0.0	W/17400998-17401443,17401534-17401559,17401646-17401676,17401787-17401874,17401959-17402104,17402199-17402243,17402340-17402428,17402535-17402635,17402728-17402823,17402910-17403140	AT4G36920.1  CDS  gene_syn AP2, AP22.49, AP22_49, APETALA 2, FL1, FLO2, FLORAL HOMEOTIC PROTEIN APETALA 2, FLORAL MUTANT 2, FLOWER 1  gene AP2  function Encodes a floral homeotic gene, a member of the AP2/EREBP (ethylene responsive element binding protein) class of transcription factors and is involved in the specification of floral organ identity, establishment of floral meristem identity, suppression of floral meristem indeterminancy, and development of the ovule and seed coat. AP2 also has a role in controlling seed mass. Dominant negative allele I28, revealed a function in meristem maintenance-mutant meristems are smaller than normal siblings. AP2 appears to act on the WUS-CLV pathway in an AG independent manner.  go_component nucleus|GO:0005634|7919989|ISS  go_component nucleus|GO:0005634|7919989|TAS  go_process regulation of transcription, DNA-dependent|GO:0006355|7919989|TAS  go_process flower development|GO:0009908|7919989|TAS  go_process meristem maintenance|GO:0010073|16387832|IMP  go_process specification of floral organ identity|GO:0010093|12359889|IMP  go_process sexual reproduction|GO:0019953|9192694|TAS  go_process cell differentiation|GO:0030154|7919989|TAS  go_process seed development|GO:0048316|15708974|IMP  go_process seed development|GO:0048316|15708976|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|7919989|TAS  product AP2 (APETALA 2); transcription factor  note APETALA 2 (AP2); FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT5G67180.1); Has 5428 Blast hits to 3261 proteins in 200 species: Archae - 0; Bacteria - 14; Metazoa - 3; Fungi - 0; Plants - 5321; Viruses - 4; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT4G36920.1p  transcript_id AT4G36920.1  protein_id AT4G36920.1p  transcript_id AT4G36920.1  
At4g36925	chr4:017403980	0.0	W/17403980-17404450	AT4G36925.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24945.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G36925.1p  transcript_id AT4G36925.1  protein_id AT4G36925.1p  transcript_id AT4G36925.1  
At4g36930	chr4:017414167	0.0	W/17414167-17414676,17414909-17415019,17415092-17415157,17415255-17415320,17415415-17415660,17415739-17415808,17415893-17415945	AT4G36930.1  CDS  gene_syn AP22.25, AP22_25, SPATULA, SPT  gene SPT  function Encodes a transcription factor of the bHLH protein family. Mutants have abnormal, unfused carpels and reduced seed dormancy.  go_component nucleus|GO:0005634|18315540|IDA  go_process response to cold|GO:0009409|16303558|IMP  go_process flower development|GO:0009908||NAS  go_process response to red light|GO:0010114|16303558|IMP  go_process fruit development|GO:0010154|18315540|IMP  go_process negative regulation of seed germination|GO:0010187|16303558|IMP  go_process carpel development|GO:0048440|18315540|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11245574|TAS  go_function transcription factor activity|GO:0003700|12679534|ISS  product SPT (SPATULA); DNA binding / transcription factor  note SPATULA (SPT); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: ALC (ALCATRAZ); DNA binding / transcription factor (TAIR:AT5G67110.1); Has 3692 Blast hits to 2866 proteins in 254 species: Archae - 0; Bacteria - 8; Metazoa - 968; Fungi - 107; Plants - 2014; Viruses - 0; Other Eukaryotes - 595 (source: NCBI BLink).  protein_id AT4G36930.1p  transcript_id AT4G36930.1  protein_id AT4G36930.1p  transcript_id AT4G36930.1  
At4g36940	chr4:017416938	0.0	W/17416938-17417092,17417168-17417312,17417382-17417501,17417580-17417714,17417802-17417863,17417964-17418039,17418173-17418274,17418370-17418486,17418585-17418643,17418727-17418901,17418982-17419116,17419218-17419316,17419397-17419505,17419586-17419698,17419806-17419883	AT4G36940.1  CDS  gene_syn AP22.31, AP22_31, NAPRT1, NICOTINATE PHOSPHORIBOSYLTRANSFERASE 1  gene NAPRT1  go_process pyridine nucleotide biosynthetic process|GO:0019363||IEA  go_function nicotinate phosphoribosyltransferase activity|GO:0004516||IEA  go_component cellular_component|GO:0005575||ND  go_process nicotinate nucleotide salvage|GO:0019358||ISS  go_function nicotinate phosphoribosyltransferase activity|GO:0004516||ISS  product NAPRT1 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 1); nicotinate phosphoribosyltransferase  note NICOTINATE PHOSPHORIBOSYLTRANSFERASE 1 (NAPRT1); FUNCTIONS IN: nicotinate phosphoribosyltransferase activity; INVOLVED IN: pyridine nucleotide biosynthetic process, nicotinate nucleotide salvage; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nicotinate phosphoribosyltransferase-related (InterPro:IPR007229), Nicotinate phosphoribosyltransferase putative (InterPro:IPR006405), Nicotinate phosphoribosyltransferase-like (InterPro:IPR015977); BEST Arabidopsis thaliana protein match is: NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2); nicotinate phosphoribosyltransferase (TAIR:AT2G23420.1); Has 1505 Blast hits to 1470 proteins in 648 species: Archae - 89; Bacteria - 1061; Metazoa - 168; Fungi - 25; Plants - 33; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).  protein_id AT4G36940.1p  transcript_id AT4G36940.1  protein_id AT4G36940.1p  transcript_id AT4G36940.1  
At4g36945	chr4:017421976	0.0	C/17421976-17422047,17421769-17421891,17421539-17421676,17421217-17421315,17420835-17421138,17420531-17420754,17420353-17420439,17420098-17420277	AT4G36945.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_function phospholipase C activity|GO:0004629||IEA  go_function phosphoric diester hydrolase activity|GO:0008081||IEA  product phospholipase C/ phosphoric diester hydrolase  note phospholipase C/ phosphoric diester hydrolase; FUNCTIONS IN: phospholipase C activity, phosphoric diester hydrolase activity; INVOLVED IN: intracellular signaling cascade, lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific , X region (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946); BEST Arabidopsis thaliana protein match is: phospholipase C/ phosphoric diester hydrolase (TAIR:AT3G19310.1); Has 282 Blast hits to 280 proteins in 57 species: Archae - 0; Bacteria - 36; Metazoa - 8; Fungi - 111; Plants - 78; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT4G36945.1p  transcript_id AT4G36945.1  protein_id AT4G36945.1p  transcript_id AT4G36945.1  
At4g36950	chr4:017422834	0.0	C/17422834-17423844	AT4G36950.1  CDS  gene_syn AP22.87, MAPKKK21  gene MAPKKK21  function member of MEKK subfamily  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  product MAPKKK21; ATP binding / protein kinase/ protein serine/threonine kinase  note MAPKKK21; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: MAPKKK19; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G67080.1); Has 79009 Blast hits to 78268 proteins in 1903 species: Archae - 46; Bacteria - 6395; Metazoa - 35031; Fungi - 7367; Plants - 15247; Viruses - 458; Other Eukaryotes - 14465 (source: NCBI BLink).  protein_id AT4G36950.1p  transcript_id AT4G36950.1  protein_id AT4G36950.1p  transcript_id AT4G36950.1  
At4g36960	chr4:017427349	0.0	W/17427349-17427366,17427465-17427554,17427638-17427703,17427793-17427858,17427946-17428031,17428132-17428177,17428268-17428322,17428521-17428781,17428864-17428994,17429081-17429185,17429276-17429428,17429527-17429589	AT4G36960.1  CDS  gene_syn AP22.66, AP22_66  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative (TAIR:AT3G07810.2); Has 25162 Blast hits to 12452 proteins in 561 species: Archae - 4; Bacteria - 1174; Metazoa - 15257; Fungi - 2083; Plants - 4313; Viruses - 0; Other Eukaryotes - 2331 (source: NCBI BLink).  protein_id AT4G36960.1p  transcript_id AT4G36960.1  protein_id AT4G36960.1p  transcript_id AT4G36960.1  
At4g36960	chr4:017427349	0.0	W/17427349-17427366,17427465-17427554,17427638-17427703,17427793-17427858,17427946-17428031,17428132-17428177,17428268-17428322,17428521-17428781,17428864-17428994,17429081-17429185,17429276-17429428,17429527-17429589	AT4G36960.2  CDS  gene_syn AP22.66, AP22_66  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative (TAIR:AT3G07810.2).  protein_id AT4G36960.2p  transcript_id AT4G36960.2  protein_id AT4G36960.2p  transcript_id AT4G36960.2  
At4g36970	chr4:017430838	0.0	C/17430838-17431459,17430327-17430654,17430173-17430254,17429826-17430077	AT4G36970.1  CDS  gene_syn AP22.30, AP22_30  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_function DNA binding|GO:0003677||ISS  product remorin family protein  note remorin family protein; FUNCTIONS IN: DNA binding; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal region (InterPro:IPR005516); BEST Arabidopsis thaliana protein match is: remorin family protein (TAIR:AT1G45207.2); Has 426 Blast hits to 332 proteins in 48 species: Archae - 0; Bacteria - 7; Metazoa - 42; Fungi - 14; Plants - 247; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT4G36970.1p  transcript_id AT4G36970.1  protein_id AT4G36970.1p  transcript_id AT4G36970.1  
At4g36980	chr4:017436816	0.0	C/17436816-17437012,17436652-17436690,17436425-17436573,17436211-17436286,17435729-17436023,17435518-17435627,17435392-17435439,17435104-17435301,17434789-17434890,17434556-17434686,17434283-17434461	AT4G36980.2  CDS  gene_syn AP22.35, AP22_35  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 5175 Blast hits to 4174 proteins in 232 species: Archae - 0; Bacteria - 103; Metazoa - 2962; Fungi - 608; Plants - 250; Viruses - 14; Other Eukaryotes - 1238 (source: NCBI BLink).  protein_id AT4G36980.2p  transcript_id AT4G36980.2  protein_id AT4G36980.2p  transcript_id AT4G36980.2  
At4g36980	chr4:017436816	0.0	C/17436816-17437012,17436652-17436690,17436425-17436573,17436211-17436286,17435729-17436023,17435518-17435627,17435392-17435439,17435104-17435301,17434789-17434890,17434556-17434686,17434320-17434461,17433990-17434142,17433861-17433888	AT4G36980.1  CDS  gene_syn AP22.35, AP22_35  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 17658 Blast hits to 10230 proteins in 432 species: Archae - 0; Bacteria - 201; Metazoa - 12139; Fungi - 1445; Plants - 942; Viruses - 234; Other Eukaryotes - 2697 (source: NCBI BLink).  protein_id AT4G36980.1p  transcript_id AT4G36980.1  protein_id AT4G36980.1p  transcript_id AT4G36980.1  
At4g36988	chr4:017440443	0.0	W/17440443-17440553	AT4G36988.1  CDS  gene_syn CPuORF49, Conserved peptide upstream open reading frame 49  gene CPuORF49  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF49 represents a conserved upstream opening reading frame relative to major ORF AT4G36990.1  go_component endomembrane system|GO:0012505||IEA  product CPuORF49 (Conserved peptide upstream open reading frame 49)  note Conserved peptide upstream open reading frame 49 (CPuORF49); LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G36988.1p  transcript_id AT4G36988.1  protein_id AT4G36988.1p  transcript_id AT4G36988.1  
At4g36990	chr4:017440660	0.0	W/17440660-17440878,17441071-17441706	AT4G36990.1  CDS  gene_syn AP22.9, AP22_9, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, AT-HSFB1, ATHSF4, CLASS B HEAT SHOCK FACTOR B1, HEAT SHOCK FACTOR 4, HSF4, HSFB1  gene HSF4  function encodes a protein whose sequence is similar to heat shock factors that regulate the expression of heat shock proteins. Transcript level is increased in response to heat shock. However, overexpression of this gene did not result in the increase of decrease of heat shock proteins.  go_component nucleus|GO:0005634||IEA  go_process response to heat|GO:0009408|9645433|IEP  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function transcription repressor activity|GO:0016564|19324928|IDA  product HSF4 (HEAT SHOCK FACTOR 4); DNA binding / transcription factor/ transcription repressor  note HEAT SHOCK FACTOR 4 (HSF4); FUNCTIONS IN: transcription repressor activity, transcription factor activity, DNA binding; INVOLVED IN: response to cyclopentenone, response to heat; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: AT-HSFB2B; transcription factor/ transcription repressor (TAIR:AT4G11660.1); Has 1299 Blast hits to 1294 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 276; Fungi - 318; Plants - 450; Viruses - 0; Other Eukaryotes - 255 (source: NCBI BLink).  protein_id AT4G36990.1p  transcript_id AT4G36990.1  protein_id AT4G36990.1p  transcript_id AT4G36990.1  
At4g37000	chr4:017442627	0.0	W/17442627-17442968,17443145-17443762	AT4G37000.1  CDS  gene_syn ACCELERATED CELL DEATH 2, ACD2, AP22.36, AP22_36, ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, ATRCCR, RCCR, RED CHLOROPHYLL CATABOLITE REDUCTASE  gene ACD2  function Mutants have spontaneous spreading cell death lesions and constitutive activation of defenses in the absence of pathogen infection. Its product was shown to display red chlorophyll catabolite reductase (RCCR), which catalyzes one step in the breakdown of the porphyrin component of chlorophyll. The enzyme was further assessed to be a Type-1 (pFCC-1-producing) RCCR.Upon P. syringae infection, ACD2 localization shifts from being largely in chloroplasts to partitioning to chloroplasts, mitochondria, and to a small extent, cytosol. Overexpression of ACD2 delayed cell death and the replication of P. syringae.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component cytoplasm|GO:0005737|16387834|IDA  go_component mitochondrion|GO:0005739|11149948|IDA  go_component mitochondrion|GO:0005739|16387834|IDA  go_component cytosol|GO:0005829|16387834|IDA  go_component chloroplast|GO:0009507|10743659|IDA  go_component chloroplast|GO:0009507|11149948|IDA  go_component chloroplast|GO:0009507|16387834|IDA  go_process plant-type hypersensitive response|GO:0009626|8187175|IMP  go_process defense response, incompatible interaction|GO:0009814|16387834|IMP  go_process chlorophyll catabolic process|GO:0015996|10743659|TAS  go_process chlorophyll catabolic process|GO:0015996|11149948|IMP  go_process chlorophyll catabolic process|GO:0015996|17237353|IMP  go_process regulation of programmed cell death|GO:0043067|16387834|IMP  go_function red chlorophyll catabolite reductase activity|GO:0051743|10743659|IDA  go_function red chlorophyll catabolite reductase activity|GO:0051743|11149948|TAS  product ACD2 (ACCELERATED CELL DEATH 2); red chlorophyll catabolite reductase  note ACCELERATED CELL DEATH 2 (ACD2); FUNCTIONS IN: red chlorophyll catabolite reductase activity; INVOLVED IN: chlorophyll catabolic process, regulation of programmed cell death, defense response, incompatible interaction, plant-type hypersensitive response; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Red chlorophyll catabolite reductase (InterPro:IPR009439); Has 143 Blast hits to 143 proteins in 21 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G37000.1p  transcript_id AT4G37000.1  protein_id AT4G37000.1p  transcript_id AT4G37000.1  
At4g37010	chr4:017444315	0.0	W/17444315-17444317,17444412-17444541,17444619-17444655,17444744-17444771,17444878-17445030,17445136-17445238,17445319-17445380	AT4G37010.2  CDS  gene_syn AP22.11, AP22_11, CEN2, CENTRIN 2  gene CEN2  go_function calcium ion binding|GO:0005509||IEA  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product caltractin, putative / centrin, putative  note CENTRIN 2 (CEN2); FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: ATCEN2 (CENTRIN2); calcium ion binding (TAIR:AT3G50360.1); Has 22964 Blast hits to 14927 proteins in 1296 species: Archae - 0; Bacteria - 63; Metazoa - 10778; Fungi - 4371; Plants - 4052; Viruses - 0; Other Eukaryotes - 3700 (source: NCBI BLink).  protein_id AT4G37010.2p  transcript_id AT4G37010.2  protein_id AT4G37010.2p  transcript_id AT4G37010.2  
At4g37010	chr4:017444421	0.0	W/17444421-17444541,17444619-17444655,17444744-17444771,17444878-17445030,17445136-17445238,17445319-17445380	AT4G37010.1  CDS  gene_syn AP22.11, AP22_11, CEN2, CENTRIN 2  gene CEN2  go_function calcium ion binding|GO:0005509||IEA  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product caltractin, putative / centrin, putative  note CENTRIN 2 (CEN2); FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: ATCEN2 (CENTRIN2); calcium ion binding (TAIR:AT3G50360.1); Has 22816 Blast hits to 14912 proteins in 1296 species: Archae - 0; Bacteria - 63; Metazoa - 10744; Fungi - 4284; Plants - 4028; Viruses - 0; Other Eukaryotes - 3697 (source: NCBI BLink).  protein_id AT4G37010.1p  transcript_id AT4G37010.1  protein_id AT4G37010.1p  transcript_id AT4G37010.1  
At4g37020	chr4:017445778	0.0	W/17445778-17445830,17445913-17445961,17446051-17446188,17446468-17446710,17446805-17446844,17446925-17447022,17447118-17447135	AT4G37020.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1219 Blast hits to 1219 proteins in 256 species: Archae - 0; Bacteria - 99; Metazoa - 480; Fungi - 272; Plants - 177; Viruses - 1; Other Eukaryotes - 190 (source: NCBI BLink).  protein_id AT4G37020.1p  transcript_id AT4G37020.1  protein_id AT4G37020.1p  transcript_id AT4G37020.1  
At4g37022	chr4:017447713	0.0	W/17447713-17447799,17447864-17447900,17447992-17448083,17448161-17448244	AT4G37022.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT4G37022.1p  transcript_id AT4G37022.1  protein_id AT4G37022.1p  transcript_id AT4G37022.1  
At4g37030	chr4:017452150	0.0	W/17452150-17452243,17452370-17452478,17452586-17452781,17452865-17452998,17453069-17453357,17453437-17453543,17453634-17453811,17453895-17454343,17454476-17454629	AT4G37030.1  CDS  gene_syn AP22.73, AP22_73  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12680.1); Has 56 Blast hits to 56 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G37030.1p  transcript_id AT4G37030.1  protein_id AT4G37030.1p  transcript_id AT4G37030.1  
At4g37040	chr4:017455175	0.0	W/17455175-17455280,17455462-17455531,17455660-17455888,17455972-17456133,17456225-17456266,17456359-17456430,17456527-17456606,17456715-17456812,17456892-17457085	AT4G37040.1  CDS  gene_syn MAP1D, METHIONINE AMINOPEPTIDASE 1D  gene MAP1D  function encodes a methionine aminopeptidase  go_component chloroplast|GO:0009507|18431481|IDA  go_function aminopeptidase activity|GO:0004177||IEA  go_function metalloexopeptidase activity|GO:0008235||IEA  go_component chloroplast|GO:0009507|15681659|TAS  go_process proteolysis|GO:0006508||ISS  go_process N-terminal protein amino acid modification|GO:0031365|15681659|TAS  go_function metalloexopeptidase activity|GO:0008235||ISS  product MAP1D (METHIONINE AMINOPEPTIDASE 1D); aminopeptidase/ metalloexopeptidase  note METHIONINE AMINOPEPTIDASE 1D (MAP1D); FUNCTIONS IN: metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis, N-terminal protein amino acid modification; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24, structural domain (InterPro:IPR000994), Peptidase M24A, methionine aminopeptidase, subfamily 1 (InterPro:IPR002467), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: MAP1C (METHIONINE AMINOPEPTIDASE 1B); aminopeptidase/ metalloexopeptidase (TAIR:AT1G13270.1); Has 11478 Blast hits to 11461 proteins in 1575 species: Archae - 263; Bacteria - 6098; Metazoa - 396; Fungi - 190; Plants - 188; Viruses - 0; Other Eukaryotes - 4343 (source: NCBI BLink).  protein_id AT4G37040.1p  transcript_id AT4G37040.1  protein_id AT4G37040.1p  transcript_id AT4G37040.1  
At4g37050	chr4:017459457	0.0	C/17459457-17459642,17458891-17459093,17458632-17458821,17458383-17458544,17458006-17458308,17457423-17457598,17457261-17457327	AT4G37050.1  CDS  gene_syn AP22.16, AP22_16, PATATIN-LIKE PROTEIN 4, PLA V, PLP4  gene PLP4  go_process lipid metabolic process|GO:0006629||IEA  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function nutrient reservoir activity|GO:0045735||ISS  product PLP4 (PATATIN-LIKE PROTEIN 4); nutrient reservoir  note PATATIN-LIKE PROTEIN 4 (PLP4); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: metabolic process, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: patatin, putative (TAIR:AT4G37070.2); Has 1536 Blast hits to 1533 proteins in 264 species: Archae - 0; Bacteria - 325; Metazoa - 199; Fungi - 121; Plants - 611; Viruses - 0; Other Eukaryotes - 280 (source: NCBI BLink).  protein_id AT4G37050.1p  transcript_id AT4G37050.1  protein_id AT4G37050.1p  transcript_id AT4G37050.1  
At4g37060	chr4:017463597	0.0	C/17463597-17463734,17463199-17463380,17462702-17462888,17462440-17462601,17462032-17462334,17461756-17461931,17461573-17461669	AT4G37060.1  CDS  gene_syn AP22.93, AP22_93, PATATIN-LIKE PROTEIN 5, PLA IVB, PLP5  gene PLP5  go_process lipid metabolic process|GO:0006629||IEA  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function nutrient reservoir activity|GO:0045735||ISS  product PLP5 (PATATIN-LIKE PROTEIN 5); nutrient reservoir  note PATATIN-LIKE PROTEIN 5 (PLP5); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: metabolic process, lipid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: patatin, putative (TAIR:AT4G37070.2); Has 1596 Blast hits to 1594 proteins in 268 species: Archae - 0; Bacteria - 331; Metazoa - 225; Fungi - 126; Plants - 616; Viruses - 0; Other Eukaryotes - 298 (source: NCBI BLink).  protein_id AT4G37060.1p  transcript_id AT4G37060.1  protein_id AT4G37060.1p  transcript_id AT4G37060.1  
At4g37070	chr4:017466921	0.0	C/17466921-17467058,17466526-17466707,17466078-17466264,17465826-17465987,17465415-17465717,17465167-17465346	AT4G37070.1  CDS  gene_syn AP22.83, AP22_83, PLA IVA, PLP1  gene PLP1  go_process lipid metabolic process|GO:0006629||IEA  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function nutrient reservoir activity|GO:0045735||ISS  product patatin, putative  note PLP1; FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: metabolic process, lipid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: PLP5 (PATATIN-LIKE PROTEIN 5); nutrient reservoir (TAIR:AT4G37060.1); Has 1572 Blast hits to 1570 proteins in 269 species: Archae - 0; Bacteria - 330; Metazoa - 217; Fungi - 113; Plants - 615; Viruses - 0; Other Eukaryotes - 297 (source: NCBI BLink).  protein_id AT4G37070.1p  transcript_id AT4G37070.1  protein_id AT4G37070.1p  transcript_id AT4G37070.1  
At4g37070	chr4:017466921	0.0	C/17466921-17467058,17466526-17466707,17466078-17466264,17465826-17465987,17465415-17465717,17465167-17465346	AT4G37070.3  CDS  gene_syn AP22.83, AP22_83, PLA IVA, PLP1  gene PLP1  go_process lipid metabolic process|GO:0006629||IEA  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function nutrient reservoir activity|GO:0045735||ISS  product patatin, putative  note PLP1; FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: metabolic process, lipid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: PLP5 (PATATIN-LIKE PROTEIN 5); nutrient reservoir (TAIR:AT4G37060.1); Has 1572 Blast hits to 1570 proteins in 269 species: Archae - 0; Bacteria - 330; Metazoa - 217; Fungi - 113; Plants - 615; Viruses - 0; Other Eukaryotes - 297 (source: NCBI BLink).  protein_id AT4G37070.3p  transcript_id AT4G37070.3  protein_id AT4G37070.3p  transcript_id AT4G37070.3  
At4g37070	chr4:017466921	0.0	C/17466921-17467058,17466526-17466707,17466078-17466264,17465826-17465987,17465415-17465717,17465171-17465346,17464916-17465012	AT4G37070.2  CDS  gene_syn AP22.83, AP22_83, PLA IVA, PLP1  gene PLP1  go_process lipid metabolic process|GO:0006629||IEA  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function nutrient reservoir activity|GO:0045735||ISS  product patatin, putative  note PLP1; FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: metabolic process, lipid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: PLP5 (PATATIN-LIKE PROTEIN 5); nutrient reservoir (TAIR:AT4G37060.1); Has 1583 Blast hits to 1581 proteins in 269 species: Archae - 0; Bacteria - 330; Metazoa - 228; Fungi - 113; Plants - 615; Viruses - 0; Other Eukaryotes - 297 (source: NCBI BLink).  protein_id AT4G37070.2p  transcript_id AT4G37070.2  protein_id AT4G37070.2p  transcript_id AT4G37070.2  
At4g37070	chr4:017466954	0.0	C/17466954-17467058,17466526-17466707,17466078-17466264,17465826-17465987,17465415-17465717,17465167-17465346	AT4G37070.4  CDS  gene_syn AP22.83, AP22_83, PLA IVA, PLP1  gene PLP1  go_process lipid metabolic process|GO:0006629||IEA  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function nutrient reservoir activity|GO:0045735||ISS  product patatin, putative  note PLP1; FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: metabolic process, lipid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: PLP5 (PATATIN-LIKE PROTEIN 5); nutrient reservoir (TAIR:AT4G37060.1); Has 1502 Blast hits to 1500 proteins in 265 species: Archae - 0; Bacteria - 327; Metazoa - 202; Fungi - 90; Plants - 605; Viruses - 0; Other Eukaryotes - 278 (source: NCBI BLink).  protein_id AT4G37070.4p  transcript_id AT4G37070.4  protein_id AT4G37070.4p  transcript_id AT4G37070.4  
At4g37080	chr4:017473719	0.0	W/17473719-17473790,17474238-17474351,17474433-17474549,17474643-17475206,17475295-17475596,17475688-17475787,17475878-17475937,17476024-17476107,17476201-17476317,17476414-17476716	AT4G37080.2  CDS  gene_syn AP22.58, AP22_58  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42690.2); Has 1477 Blast hits to 1302 proteins in 237 species: Archae - 0; Bacteria - 265; Metazoa - 359; Fungi - 57; Plants - 336; Viruses - 0; Other Eukaryotes - 460 (source: NCBI BLink).  protein_id AT4G37080.2p  transcript_id AT4G37080.2  protein_id AT4G37080.2p  transcript_id AT4G37080.2  
At4g37080	chr4:017474205	0.0	W/17474205-17474351,17474433-17474549,17474643-17475206,17475295-17475596,17475688-17475787,17475878-17475937,17476024-17476107,17476201-17476317,17476414-17476716	AT4G37080.1  CDS  gene_syn AP22.58, AP22_58  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42690.2); Has 1454 Blast hits to 1265 proteins in 227 species: Archae - 0; Bacteria - 255; Metazoa - 354; Fungi - 54; Plants - 335; Viruses - 0; Other Eukaryotes - 456 (source: NCBI BLink).  protein_id AT4G37080.1p  transcript_id AT4G37080.1  protein_id AT4G37080.1p  transcript_id AT4G37080.1  
At4g37090	chr4:017477338	0.0	W/17477338-17477400,17477484-17477536,17477942-17478127,17478221-17478298,17478379-17478559	AT4G37090.1  CDS  gene_syn AP22.46, AP22_46  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1174 Blast hits to 794 proteins in 120 species: Archae - 2; Bacteria - 24; Metazoa - 344; Fungi - 98; Plants - 43; Viruses - 11; Other Eukaryotes - 652 (source: NCBI BLink).  protein_id AT4G37090.1p  transcript_id AT4G37090.1  protein_id AT4G37090.1p  transcript_id AT4G37090.1  
At4g37090	chr4:017477338	0.0	W/17477338-17477400,17477490-17477536,17477942-17478127,17478221-17478298,17478379-17478559	AT4G37090.2  CDS  gene_syn AP22.46, AP22_46  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 982 Blast hits to 667 proteins in 108 species: Archae - 0; Bacteria - 20; Metazoa - 300; Fungi - 70; Plants - 42; Viruses - 23; Other Eukaryotes - 527 (source: NCBI BLink).  protein_id AT4G37090.2p  transcript_id AT4G37090.2  protein_id AT4G37090.2p  transcript_id AT4G37090.2  
At4g37095	chr4:017478992	0.0	C/17478992-17479107,17478885-17478891	AT4G37095.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G37095.1p  transcript_id AT4G37095.1  protein_id AT4G37095.1p  transcript_id AT4G37095.1  
At4g37100	chr4:017479173	0.0	C/17479173-17481863	AT4G37100.1  CDS  gene_syn AP22.68, AP22_68  go_component plasma membrane|GO:0005886|17317660|IDA  go_function catalytic activity|GO:0003824||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_process biological_process|GO:0008150||ND  product catalytic/ pyridoxal phosphate binding  note catalytic/ pyridoxal phosphate binding; FUNCTIONS IN: pyridoxal phosphate binding, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: catalytic/ pyridoxal phosphate binding (TAIR:AT2G23520.1); Has 369 Blast hits to 323 proteins in 99 species: Archae - 8; Bacteria - 18; Metazoa - 96; Fungi - 77; Plants - 124; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT4G37100.1p  transcript_id AT4G37100.1  protein_id AT4G37100.1p  transcript_id AT4G37100.1  
At4g37110	chr4:017485917	0.0	C/17485917-17486197,17485752-17485790,17485376-17485615,17485199-17485285,17484924-17485053,17484343-17484819	AT4G37110.1  CDS  gene_syn AP22.72, AP22_72  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Cell division cycle-associated protein (InterPro:IPR018866); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23530.1); Has 269 Blast hits to 266 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 26; Plants - 106; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT4G37110.1p  transcript_id AT4G37110.1  protein_id AT4G37110.1p  transcript_id AT4G37110.1  
At4g37120	chr4:017486679	0.0	W/17486679-17486694,17486945-17487108,17487200-17487726,17487819-17487954,17488049-17488348,17488449-17488665,17488773-17488876,17488977-17489123	AT4G37120.1  CDS  gene_syn AP22.39, AP22_39, SMP2  gene SMP2  function Encodes a zinc finger containing protein similar to step II splicing factors that is similar to SMP1. SMP2 is also reduced in SMP1 epigenetic alleles; plants make smaller organs having reduced cell numbers but increased cell size.  go_component cellular_component|GO:0005575||ND  go_process positive regulation of cell proliferation|GO:0008284|15937226|IGI  go_process RNA splicing|GO:0008380|15937226|TAS  go_function single-stranded RNA binding|GO:0003727|15937226|TAS  product SMP2; single-stranded RNA binding  note SMP2; FUNCTIONS IN: single-stranded RNA binding; INVOLVED IN: positive regulation of cell proliferation, RNA splicing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: SMP1 (SWELLMAP 1); nucleic acid binding / single-stranded RNA binding (TAIR:AT1G65660.1); Has 383 Blast hits to 370 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 103; Plants - 35; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT4G37120.1p  transcript_id AT4G37120.1  protein_id AT4G37120.1p  transcript_id AT4G37120.1  
At4g37130	chr4:017489567	0.0	W/17489567-17489937,17490114-17490228,17490320-17490796,17490893-17491391,17491536-17491576,17491735-17491773	AT4G37130.1  CDS  gene_syn AP22.15, AP22_15  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 28754 Blast hits to 10910 proteins in 570 species: Archae - 13; Bacteria - 821; Metazoa - 8015; Fungi - 3269; Plants - 2417; Viruses - 369; Other Eukaryotes - 13850 (source: NCBI BLink).  protein_id AT4G37130.1p  transcript_id AT4G37130.1  protein_id AT4G37130.1p  transcript_id AT4G37130.1  
At4g37140	chr4:017492373	0.0	C/17492373-17492728,17492115-17492220	AT4G37140.1  CDS  gene_syn AP22.92, AP22_92, ARABIDOPSIS THALIANA METHYL ESTERASE 20, ATMES20, MATERNAL EFFECT EMBRYO ARREST 69, MEE69, MES20, METHYL ESTERASE 20  gene MEE69  function Encodes a protein with similarity to SABP2, a methyl salicylate esterase from tobacco. However, this protein is truncated and lacks two of the residues of the predicted catalytic triad, suggesting that it does not have this enzymatic activity.  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function hydrolase activity, acting on ester bonds|GO:0016788||ISS  product MEE69 (MATERNAL EFFECT EMBRYO ARREST 69); hydrolase, acting on ester bonds  note MATERNAL EFFECT EMBRYO ARREST 69 (MEE69); FUNCTIONS IN: hydrolase activity, acting on ester bonds; INVOLVED IN: embryonic development ending in seed dormancy; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: MES9 (METHYL ESTERASE 9); hydrolase, acting on ester bonds / methyl indole-3-acetate esterase/ methyl jasmonate esterase/ methyl salicylate esterase (TAIR:AT4G37150.1); Has 913 Blast hits to 913 proteins in 205 species: Archae - 0; Bacteria - 427; Metazoa - 1; Fungi - 9; Plants - 321; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink).  protein_id AT4G37140.1p  transcript_id AT4G37140.1  protein_id AT4G37140.1p  transcript_id AT4G37140.1  
At4g37150	chr4:017493704	0.0	C/17493704-17494057,17493353-17493487,17492985-17493266	AT4G37150.1  CDS  gene_syn AP22.78, AP22_78, ARABIDOPSIS THALIANA METHYL ESTERASE 9, ATMES9, MES9, METHYL ESTERASE 9  gene MES9  function Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES9 appears to be involved in MeSA hydrolysis in planta. Expression of MES9 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro.  go_process systemic acquired resistance|GO:0009627|18643994|IGI  go_process jasmonic acid metabolic process|GO:0009694|18467465|IDA  go_process salicylic acid metabolic process|GO:0009696|18467465|IDA  go_process defense response to fungus, incompatible interaction|GO:0009817|18643994|TAS  go_function hydrolase activity, acting on ester bonds|GO:0016788|18467465|IDA  go_function hydrolase activity, acting on ester bonds|GO:0016788||ISS  go_function methyl indole-3-acetate esterase activity|GO:0080030|18467465|IDA  go_function methyl salicylate esterase activity|GO:0080031|18643994|IMP  go_function methyl jasmonate esterase activity|GO:0080032|18467465|IDA  product MES9 (METHYL ESTERASE 9); hydrolase, acting on ester bonds / methyl indole-3-acetate esterase/ methyl jasmonate esterase/ methyl salicylate esterase  note METHYL ESTERASE 9 (MES9); FUNCTIONS IN: hydrolase activity, acting on ester bonds, methyl salicylate esterase activity, methyl jasmonate esterase activity, methyl indole-3-acetate esterase activity; INVOLVED IN: jasmonic acid metabolic process, defense response to fungus, incompatible interaction, systemic acquired resistance, salicylic acid metabolic process; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: MES4 (METHYL ESTERASE 4); hydrolase/ hydrolase, acting on ester bonds / methyl salicylate esterase (TAIR:AT2G23580.1); Has 1251 Blast hits to 1251 proteins in 278 species: Archae - 5; Bacteria - 582; Metazoa - 25; Fungi - 29; Plants - 340; Viruses - 0; Other Eukaryotes - 270 (source: NCBI BLink).  protein_id AT4G37150.1p  transcript_id AT4G37150.1  protein_id AT4G37150.1p  transcript_id AT4G37150.1  
At4g37160	chr4:017496975	0.0	C/17496975-17497124,17496774-17496883,17496414-17496687,17496161-17496260,17495724-17496069,17495262-17495627,17495098-17495176,17494820-17495020	AT4G37160.1  CDS  gene_syn AP22.55, AP22_55, SKU5 Similar 15, sks15  gene sks15  go_component endomembrane system|GO:0012505||IEA  go_function copper ion binding|GO:0005507||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function copper ion binding|GO:0005507||ISS  product sks15 (SKU5 Similar 15); copper ion binding / oxidoreductase  note SKU5 Similar 15 (sks15); FUNCTIONS IN: oxidoreductase activity, copper ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: sks16 (SKU5 Similar 16); copper ion binding / pectinesterase (TAIR:AT2G23630.1); Has 3813 Blast hits to 3802 proteins in 678 species: Archae - 8; Bacteria - 1022; Metazoa - 253; Fungi - 1594; Plants - 773; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).  protein_id AT4G37160.1p  transcript_id AT4G37160.1  protein_id AT4G37160.1p  transcript_id AT4G37160.1  
At4g37170	chr4:017498580	0.0	C/17498580-17500655	AT4G37170.1  CDS  gene_syn AP22.43, AP22_43  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 15266 Blast hits to 5209 proteins in 155 species: Archae - 0; Bacteria - 4; Metazoa - 21; Fungi - 77; Plants - 14856; Viruses - 0; Other Eukaryotes - 308 (source: NCBI BLink).  protein_id AT4G37170.1p  transcript_id AT4G37170.1  protein_id AT4G37170.1p  transcript_id AT4G37170.1  
At4g37175	chr4:017500807	0.0	C/17500807-17500878	AT4G37175.1  tRNA  gene_syn 68071.TRNA-GLU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Glu (anticodon: TTC)  transcript_id AT4G37175.1  
At4g37180	chr4:017504648	0.0	W/17504648-17504873,17504945-17505126,17505217-17505532,17505647-17505723,17505817-17506107	AT4G37180.2  CDS  function myb family transcription factor, contains Pfam domain, PF00249: Myb-like DNA-binding domain l; also isolated as a putative cytoskeletal protein in a yeast screen  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677|11118137|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT2G03500.1); Has 906 Blast hits to 903 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 0; Plants - 863; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT4G37180.2p  transcript_id AT4G37180.2  protein_id AT4G37180.2p  transcript_id AT4G37180.2  
At4g37180	chr4:017504648	0.0	W/17504648-17504873,17504966-17505126,17505217-17505532,17505647-17505723,17505817-17506107	AT4G37180.1  CDS  function myb family transcription factor, contains Pfam domain, PF00249: Myb-like DNA-binding domain l; also isolated as a putative cytoskeletal protein in a yeast screen  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677|11118137|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT2G03500.1); Has 906 Blast hits to 903 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 0; Plants - 863; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT4G37180.1p  transcript_id AT4G37180.1  protein_id AT4G37180.1p  transcript_id AT4G37180.1  
At4g37190	chr4:017507155	0.0	W/17507155-17507226,17507387-17507488,17507576-17507621,17507718-17507796,17507936-17508272,17508355-17508595,17508701-17509512	AT4G37190.1  CDS  gene_syn AP22.7, AP22_7  go_component plasma membrane|GO:0005886|17151019|IDA  go_process protein polymerization|GO:0051258||IEA  go_component cytosol|GO:0005829|18433157|IDA  product unknown protein  note INVOLVED IN: protein polymerization; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin/FtsZ, GTPase (InterPro:IPR003008); Has 251 Blast hits to 250 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 89; Plants - 28; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT4G37190.1p  transcript_id AT4G37190.1  protein_id AT4G37190.1p  transcript_id AT4G37190.1  
At4g37190	chr4:017507453	0.0	W/17507453-17507488,17507576-17507621,17507718-17507796,17507936-17508272,17508355-17508595,17508701-17509512	AT4G37190.2  CDS  gene_syn AP22.7, AP22_7  go_component plasma membrane|GO:0005886|17151019|IDA  go_process protein polymerization|GO:0051258||IEA  go_component cytosol|GO:0005829|18433157|IDA  product unknown protein  note INVOLVED IN: protein polymerization; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tubulin/FtsZ, GTPase (InterPro:IPR003008); Has 243 Blast hits to 242 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 83; Plants - 28; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT4G37190.2p  transcript_id AT4G37190.2  protein_id AT4G37190.2p  transcript_id AT4G37190.2  
At4g37200	chr4:017511075	0.0	C/17511075-17511230,17510760-17511002,17510582-17510685,17509836-17510118	AT4G37200.1  CDS  gene_syn AP22.37, AP22_37, HCF164  gene HCF164  function Encodes thioredoxin-like protein with disulfide reductase activity that is involved in the biogenesis of the plastid cytochrome b6f complex. Protein is located in the thylakoid membrane with the C-terminal hydrophilic portion, containing the thioredoxin like domain, extending into the thylakoid lumen.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid|GO:0009534|19259774|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|19259774|IDA  go_component chloroplast thylakoid membrane|GO:0009535|11701887|IDA  go_process cytochrome b6f complex assembly|GO:0010190|11701887|IMP  go_function oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor|GO:0016671|11701887|IDA  product HCF164; oxidoreductase, acting on sulfur group of donors, disulfide as acceptor  note HCF164; FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: cytochrome b6f complex assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast thylakoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Aty2 (Arabidopsis thioredoxin y2); electron carrier/ protein disulfide oxidoreductase (TAIR:AT1G43560.1); Has 8666 Blast hits to 8406 proteins in 1443 species: Archae - 75; Bacteria - 4380; Metazoa - 903; Fungi - 301; Plants - 622; Viruses - 3; Other Eukaryotes - 2382 (source: NCBI BLink).  protein_id AT4G37200.1p  transcript_id AT4G37200.1  protein_id AT4G37200.1p  transcript_id AT4G37200.1  
At4g37210	chr4:017512376	0.0	W/17512376-17512704,17512932-17513149,17513243-17513455,17513543-17513633,17513719-17513992,17514068-17514421	AT4G37210.1  CDS  gene_syn AP22.13, AP22_13  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product tetratricopeptide repeat (TPR)-containing protein  note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); Has 580 Blast hits to 491 proteins in 143 species: Archae - 4; Bacteria - 39; Metazoa - 258; Fungi - 121; Plants - 40; Viruses - 8; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT4G37210.1p  transcript_id AT4G37210.1  protein_id AT4G37210.1p  transcript_id AT4G37210.1  
At4g37210	chr4:017512376	0.0	W/17512376-17512704,17512932-17513149,17513243-17513455,17513543-17513633,17513719-17513996,17514068-17514072	AT4G37210.2  CDS  gene_syn AP22.13, AP22_13  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product tetratricopeptide repeat (TPR)-containing protein  note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); Has 446 Blast hits to 385 proteins in 114 species: Archae - 0; Bacteria - 13; Metazoa - 238; Fungi - 99; Plants - 35; Viruses - 6; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT4G37210.2p  transcript_id AT4G37210.2  protein_id AT4G37210.2p  transcript_id AT4G37210.2  
At4g37220	chr4:017515106	0.0	W/17515106-17515281,17515371-17515478,17515560-17515630,17515716-17515969	AT4G37220.1  CDS  gene_syn AP22.71, AP22_71  go_component cellular_component|GO:0005575||ND  go_process response to stress|GO:0006950||ISS  go_process response to sucrose stimulus|GO:0009744|16463203|IEP  go_process response to glucose stimulus|GO:0009749|16463203|IEP  go_process response to fructose stimulus|GO:0009750|16463203|IEP  go_function molecular_function|GO:0003674||ND  product stress-responsive protein, putative  note stress-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, root, leaf; CONTAINS InterPro DOMAIN/s: Cold acclimation WCOR413 (InterPro:IPR008892); BEST Arabidopsis thaliana protein match is: COR413-PM2 (COLD-REGULATED 413-PLASMA MEMBRANE 2) (TAIR:AT3G50830.1); Has 97 Blast hits to 96 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G37220.1p  transcript_id AT4G37220.1  protein_id AT4G37220.1p  transcript_id AT4G37220.1  
At4g37225	chr4:017516187	0.0	C/17516187-17516857	AT4G37225.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT4G37230  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G37225.1  
At4g37230	chr4:017516424	0.0	W/17516424-17516628,17517361-17517587	AT4G37230.1  CDS  gene_syn AP22.76, AP22_76  go_component oxygen evolving complex|GO:0009654||IEA  go_component extrinsic to membrane|GO:0019898||IEA  go_process photosynthesis|GO:0015979||IEA  go_process photosystem II stabilization|GO:0042549||IEA  go_function calcium ion binding|GO:0005509||IEA  go_component oxygen evolving complex|GO:0009654||ISS  product oxygen-evolving enhancer protein, chloroplast, putative / 33 kDa subunit of oxygen evolving system of photosystem II, putative  note oxygen-evolving enhancer protein, chloroplast, putative / 33 kDa subunit of oxygen evolving system of photosystem II, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosystem II stabilization, photosynthesis; LOCATED IN: oxygen evolving complex, extrinsic to membrane; CONTAINS InterPro DOMAIN/s: Photosystem II manganese-stabilizing protein PsbO (InterPro:IPR002628); BEST Arabidopsis thaliana protein match is: PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1); oxygen evolving/ poly(U) binding (TAIR:AT5G66570.1); Has 357 Blast hits to 357 proteins in 114 species: Archae - 0; Bacteria - 115; Metazoa - 1; Fungi - 0; Plants - 116; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).  protein_id AT4G37230.1p  transcript_id AT4G37230.1  protein_id AT4G37230.1p  transcript_id AT4G37230.1  
At4g37235	chr4:017518052	0.0	W/17518052-17518188,17518269-17518401,17519483-17519671	AT4G37235.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50810.1); Has 97 Blast hits to 97 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G37235.1p  transcript_id AT4G37235.1  protein_id AT4G37235.1p  transcript_id AT4G37235.1  
At4g37240	chr4:017524546	0.0	W/17524546-17525052	AT4G37240.1  CDS  gene_syn AP22.53, AP22_53  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23690.1); Has 130 Blast hits to 130 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 130; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G37240.1p  transcript_id AT4G37240.1  protein_id AT4G37240.1p  transcript_id AT4G37240.1  
At4g37250	chr4:017528580	0.0	C/17528580-17530191,17527789-17528483	AT4G37250.1  CDS  gene_syn AP22.22, AP22_22  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat family protein / protein kinase family protein  note leucine-rich repeat family protein / protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT2G23300.1); Has 84705 Blast hits to 60717 proteins in 2650 species: Archae - 63; Bacteria - 5442; Metazoa - 27750; Fungi - 3433; Plants - 38255; Viruses - 214; Other Eukaryotes - 9548 (source: NCBI BLink).  protein_id AT4G37250.1p  transcript_id AT4G37250.1  protein_id AT4G37250.1p  transcript_id AT4G37250.1  
At4g37260	chr4:017540602	0.0	W/17540602-17541564	AT4G37260.1  CDS  gene_syn AP22.97, AP22_97, ATMYB73, MYB DOMAIN PROTEIN 73, MYB73  gene MYB73  function Member of the R2R3 factor gene family.  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to chitin|GO:0010200|17722694|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB73 (MYB DOMAIN PROTEIN 73); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 73 (MYB73); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 10 processes; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: AtMYB70 (myb domain protein 70); DNA binding / transcription factor (TAIR:AT2G23290.1); Has 6274 Blast hits to 5569 proteins in 353 species: Archae - 0; Bacteria - 0; Metazoa - 685; Fungi - 410; Plants - 3352; Viruses - 3; Other Eukaryotes - 1824 (source: NCBI BLink).  protein_id AT4G37260.1p  transcript_id AT4G37260.1  protein_id AT4G37260.1p  transcript_id AT4G37260.1  
At4g37270	chr4:017545852	0.0	C/17545852-17546352,17545602-17545752,17545321-17545505,17545044-17545190,17544760-17544955,17544488-17544600,17543887-17544125,17543363-17543468,17543046-17543210,17542682-17542898,17542410-17542597,17542240-17542326,17541987-17542151	AT4G37270.1  CDS  gene_syn AP22.4, AP22_4, ATHMA1, HEAVY METAL ATPASE 1, HMA1  gene HMA1  function Encodes a P1B-type ATPases that is localized to the chloroplast envelope and is involved in the transport of Cu into chloroplasts. It is essential for growth under high light conditions.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|16282320|IDA  go_component chloroplast envelope|GO:0009941|19207208|IDA  go_process calcium ion transport|GO:0006816|18252706|IGI  go_process cellular copper ion homeostasis|GO:0006878|16282320|IMP  go_process response to toxin|GO:0009636|18252706|IGI  go_process response to light intensity|GO:0009642|16282320|IMP  go_process zinc ion homeostasis|GO:0055069|19207208|IMP  go_function copper-exporting ATPase activity|GO:0004008||ISS  go_function calcium-transporting ATPase activity|GO:0005388|18252706|IGI  go_function cadmium-transporting ATPase activity|GO:0015434|18252706|IGI  go_function zinc transporting ATPase activity|GO:0015633|19207208|IDA  go_function ATPase activity|GO:0016887|16282320|IMP  product HMA1; ATPase/ cadmium-transporting ATPase/ calcium-transporting ATPase/ copper-exporting ATPase/ zinc transporting ATPase  note HMA1; FUNCTIONS IN: copper-exporting ATPase activity, zinc transporting ATPase activity, calcium-transporting ATPase activity, ATPase activity, cadmium-transporting ATPase activity; INVOLVED IN: cellular copper ion homeostasis, response to toxin, calcium ion transport, zinc ion homeostasis, response to light intensity; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, heavy metal translocating (InterPro:IPR006416), ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating (InterPro:IPR006404), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: HMA2; cadmium-transporting ATPase (TAIR:AT4G30110.1); Has 21106 Blast hits to 17836 proteins in 1775 species: Archae - 437; Bacteria - 12015; Metazoa - 3311; Fungi - 1172; Plants - 951; Viruses - 7; Other Eukaryotes - 3213 (source: NCBI BLink).  protein_id AT4G37270.1p  transcript_id AT4G37270.1  protein_id AT4G37270.1p  transcript_id AT4G37270.1  
At4g37280	chr4:017549222	0.0	C/17549222-17549362,17548576-17548629,17548453-17548466,17548217-17548362,17548078-17548113,17547902-17547942,17547618-17547719,17547362-17547441,17547101-17547270,17546934-17547018,17546748-17546841	AT4G37280.1  CDS  gene_syn AP22.79, AP22_79  go_component chromatin|GO:0000785||IEA  go_component nucleus|GO:0005634||IEA  go_process chromatin assembly or disassembly|GO:0006333||IEA  go_function chromatin binding|GO:0003682||IEA  product MRG family protein  note MRG family protein; FUNCTIONS IN: chromatin binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H4 acetyltransferase, NuA4 complex, Eaf3/MRG15 subunit (InterPro:IPR017398), MRG (InterPro:IPR008676), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: chromatin binding (TAIR:AT1G02740.1); Has 950 Blast hits to 825 proteins in 140 species: Archae - 0; Bacteria - 2; Metazoa - 688; Fungi - 159; Plants - 55; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT4G37280.1p  transcript_id AT4G37280.1  protein_id AT4G37280.1p  transcript_id AT4G37280.1  
At4g37290	chr4:017549929	0.0	C/17549929-17550183	AT4G37290.1  CDS  gene_syn F6G17.7  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: cotyledon, hypocotyl, leaf; EXPRESSED DURING: LP.04 four leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23270.1); Has 10 Blast hits to 10 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G37290.1p  transcript_id AT4G37290.1  protein_id AT4G37290.1p  transcript_id AT4G37290.1  
At4g37295	chr4:017553628	0.0	W/17553628-17553888	AT4G37295.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, root, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G37295.1p  transcript_id AT4G37295.1  protein_id AT4G37295.1p  transcript_id AT4G37295.1  
At4g37300	chr4:017554805	0.0	W/17554805-17555026,17555108-17555209,17555301-17555498	AT4G37300.1  CDS  gene_syn F6G17.14, MEE59, maternal effect embryo arrest 59  gene MEE59  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function molecular_function|GO:0003674||ND  product MEE59 (maternal effect embryo arrest 59)  note maternal effect embryo arrest 59 (MEE59); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 37 Blast hits to 37 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G37300.1p  transcript_id AT4G37300.1  protein_id AT4G37300.1p  transcript_id AT4G37300.1  
At4g37310	chr4:017558324	0.0	C/17558324-17558833,17557315-17557704,17556152-17556808	AT4G37310.1  CDS  gene_syn CYP81H1, F6G17.6  gene CYP81H1  function member of CYP81H  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP81H1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP81H1; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP81D8; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G37370.1); Has 23736 Blast hits to 23615 proteins in 1268 species: Archae - 32; Bacteria - 2353; Metazoa - 10314; Fungi - 4434; Plants - 5673; Viruses - 3; Other Eukaryotes - 927 (source: NCBI BLink).  protein_id AT4G37310.1p  transcript_id AT4G37310.1  protein_id AT4G37310.1p  transcript_id AT4G37310.1  
At4g37320	chr4:017561190	0.0	C/17561190-17561690,17560421-17560804,17559742-17560344	AT4G37320.1  CDS  gene_syn CYP81D5, F6G17.8  gene CYP81D5  function member of CYP81D  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP81D5; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP81D5; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP81D4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G37330.1); Has 24125 Blast hits to 24020 proteins in 1323 species: Archae - 32; Bacteria - 2627; Metazoa - 10297; Fungi - 4420; Plants - 5723; Viruses - 3; Other Eukaryotes - 1023 (source: NCBI BLink).  protein_id AT4G37320.1p  transcript_id AT4G37320.1  protein_id AT4G37320.1p  transcript_id AT4G37320.1  
At4g37330	chr4:017564069	0.0	C/17564069-17564569,17563220-17563594,17562547-17563149	AT4G37330.1  CDS  gene_syn CYP81D4, F6G17.5  gene CYP81D4  function member of CYP81D  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_function oxygen binding|GO:0019825||ISS  product CYP81D4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP81D4; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP81D5; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G37320.1); Has 25480 Blast hits to 25379 proteins in 1403 species: Archae - 32; Bacteria - 3517; Metazoa - 10255; Fungi - 4622; Plants - 5690; Viruses - 6; Other Eukaryotes - 1358 (source: NCBI BLink).  protein_id AT4G37330.1p  transcript_id AT4G37330.1  protein_id AT4G37330.1p  transcript_id AT4G37330.1  
At4g37340	chr4:017566209	0.0	C/17566209-17566706,17565668-17566054,17564953-17565570	AT4G37340.1  CDS  gene_syn CYP81D3, F6G17.1  gene CYP81D3  function member of CYP81D  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP81D3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP81D3; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP81D2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G37360.1); Has 25481 Blast hits to 25394 proteins in 1387 species: Archae - 32; Bacteria - 3457; Metazoa - 10317; Fungi - 4676; Plants - 5730; Viruses - 3; Other Eukaryotes - 1266 (source: NCBI BLink).  protein_id AT4G37340.1p  transcript_id AT4G37340.1  protein_id AT4G37340.1p  transcript_id AT4G37340.1  
At4g37360	chr4:017568361	0.0	C/17568361-17568858,17567843-17568229,17567124-17567738	AT4G37360.1  CDS  gene_syn CYP81D2, F6G17.10, F6G17_10  gene CYP81D2  function member of CYP81D  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP81D2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP81D2; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP81D3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G37340.1); Has 25232 Blast hits to 25141 proteins in 1372 species: Archae - 32; Bacteria - 3184; Metazoa - 10396; Fungi - 4649; Plants - 5730; Viruses - 3; Other Eukaryotes - 1238 (source: NCBI BLink).  protein_id AT4G37360.1p  transcript_id AT4G37360.1  protein_id AT4G37360.1p  transcript_id AT4G37360.1  
At4g37370	chr4:017571181	0.0	C/17571181-17571678,17570680-17571063,17569971-17570582	AT4G37370.1  CDS  gene_syn CYP81D8, F6G17.20, F6G17_20  gene CYP81D8  function member of CYP81D  go_component plasma membrane|GO:0005886|17317660|IDA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_function oxygen binding|GO:0019825||ISS  product CYP81D8; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP81D8; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP81D2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G37360.1); Has 25196 Blast hits to 25110 proteins in 1383 species: Archae - 32; Bacteria - 3217; Metazoa - 10369; Fungi - 4683; Plants - 5696; Viruses - 3; Other Eukaryotes - 1196 (source: NCBI BLink).  protein_id AT4G37370.1p  transcript_id AT4G37370.1  protein_id AT4G37370.1p  transcript_id AT4G37370.1  
At4g37380	chr4:017572040	0.0	C/17572040-17573938	AT4G37380.1  CDS  gene_syn F6G17.30, F6G17_30  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G66520.1); Has 12196 Blast hits to 4889 proteins in 155 species: Archae - 0; Bacteria - 4; Metazoa - 51; Fungi - 49; Plants - 11888; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink).  protein_id AT4G37380.1p  transcript_id AT4G37380.1  protein_id AT4G37380.1p  transcript_id AT4G37380.1  
At4g37390	chr4:017579722	0.0	W/17579722-17580044,17580197-17580298,17580382-17581768	AT4G37390.1  CDS  gene_syn AUR3, AUXIN UPREGULATED 3, BRU6, F6G17.40, F6G17_40, GH3-2, GH3.2, YADOKARI 1, YDK1  gene BRU6  function Encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin. May function as a negative component in auxin signaling by regulating auxin activity.  go_process response to auxin stimulus|GO:0009733|15659623|IMP  go_process response to auxin stimulus|GO:0009733||ISS  go_process auxin homeostasis|GO:0010252|15659623|TAS  go_function indole-3-acetic acid amido synthetase activity|GO:0010279|15659623|IDA  product BRU6; indole-3-acetic acid amido synthetase  note BRU6; FUNCTIONS IN: indole-3-acetic acid amido synthetase activity; INVOLVED IN: auxin homeostasis, response to auxin stimulus; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: GH3.4; indole-3-acetic acid amido synthetase (TAIR:AT1G59500.1); Has 931 Blast hits to 855 proteins in 119 species: Archae - 1; Bacteria - 279; Metazoa - 51; Fungi - 2; Plants - 220; Viruses - 0; Other Eukaryotes - 378 (source: NCBI BLink).  protein_id AT4G37390.1p  transcript_id AT4G37390.1  protein_id AT4G37390.1p  transcript_id AT4G37390.1  
At4g37400	chr4:017584096	0.0	W/17584096-17584965,17585562-17586197	AT4G37400.1  CDS  gene_syn CYP81F3, F6G17.50, F6G17_50  gene CYP81F3  function member of CYP81F  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP81F3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP81F3; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; EXPRESSED IN: stem, leaf whorl, root, stamen, leaf; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, LP.10 ten leaves visible; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP81F4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G37410.1); Has 25439 Blast hits to 25328 proteins in 1391 species: Archae - 32; Bacteria - 3341; Metazoa - 10392; Fungi - 4652; Plants - 5769; Viruses - 3; Other Eukaryotes - 1250 (source: NCBI BLink).  protein_id AT4G37400.1p  transcript_id AT4G37400.1  protein_id AT4G37400.1p  transcript_id AT4G37400.1  
At4g37410	chr4:017590848	0.0	W/17590848-17591723,17592151-17592780	AT4G37410.1  CDS  gene_syn CYP81F4, F6G17.60, F6G17_60  gene CYP81F4  function member of CYP81F  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_function oxygen binding|GO:0019825||ISS  product CYP81F4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP81F4; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP81F3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G37400.1); Has 25084 Blast hits to 24985 proteins in 1365 species: Archae - 37; Bacteria - 3168; Metazoa - 10308; Fungi - 4641; Plants - 5694; Viruses - 6; Other Eukaryotes - 1230 (source: NCBI BLink).  protein_id AT4G37410.1p  transcript_id AT4G37410.1  protein_id AT4G37410.1p  transcript_id AT4G37410.1  
At4g37409	chr4:017592316	0.0	C/17592316-17592395,17591379-17591694	AT4G37409.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G37409.1p  transcript_id AT4G37409.1  protein_id AT4G37409.1p  transcript_id AT4G37409.1  
At4g37420	chr4:017593123	0.0	W/17593123-17594889	AT4G37420.1  CDS  gene_syn F6G17.70, F6G17_70  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27200.1); Has 141 Blast hits to 141 proteins in 46 species: Archae - 0; Bacteria - 74; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT4G37420.1p  transcript_id AT4G37420.1  protein_id AT4G37420.1p  transcript_id AT4G37420.1  
At4g37432	chr4:017597179	0.0	C/17597179-17598690	AT4G37432.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT4G37430  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G37432.1  
At4g37430	chr4:017597242	0.0	W/17597242-17598126,17598212-17598829	AT4G37430.1  CDS  gene_syn CYP81F1, CYP91A2, CYTOCHROME P450 MONOOXYGENASE 81F1, CYTOCHROME P450 MONOOXYGENASE 91A2, F6G17.80, F6G17_80  gene CYP91A2  function Encodes a member of the CYP81F cytochrome P450 monooxygenase subfamily.  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_function oxygen binding|GO:0019825||ISS  product CYP91A2 (CYTOCHROME P450 MONOOXYGENASE 91A2); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYTOCHROME P450 MONOOXYGENASE 91A2 (CYP91A2); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP81F3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G37400.1); Has 24843 Blast hits to 24679 proteins in 1356 species: Archae - 32; Bacteria - 2945; Metazoa - 10435; Fungi - 4507; Plants - 5744; Viruses - 6; Other Eukaryotes - 1174 (source: NCBI BLink).  protein_id AT4G37430.1p  transcript_id AT4G37430.1  protein_id AT4G37430.1p  transcript_id AT4G37430.1  
At4g37440	chr4:017601647	0.0	W/17601647-17602029,17602546-17602862,17602968-17603021,17603112-17603590,17603664-17603846	AT4G37440.1  CDS  gene_syn F6G17.90, F6G17_90  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G59670.1); Has 166 Blast hits to 154 proteins in 41 species: Archae - 0; Bacteria - 5; Metazoa - 46; Fungi - 9; Plants - 44; Viruses - 3; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT4G37440.1p  transcript_id AT4G37440.1  protein_id AT4G37440.1p  transcript_id AT4G37440.1  
At4g37440	chr4:017601647	0.0	W/17601647-17602029,17602546-17602862,17602968-17603021,17603112-17603594,17603669-17603766	AT4G37440.2  CDS  gene_syn F6G17.90, F6G17_90  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G59670.1); Has 83 Blast hits to 80 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 4; Plants - 38; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT4G37440.2p  transcript_id AT4G37440.2  protein_id AT4G37440.2p  transcript_id AT4G37440.2  
At4g37445	chr4:017604888	0.0	C/17604888-17604918,17604664-17604778,17604510-17604570,17604144-17604422	AT4G37445.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT1G64850.1); Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G37445.1p  transcript_id AT4G37445.1  protein_id AT4G37445.1p  transcript_id AT4G37445.1  
At4g37450	chr4:017606192	0.0	C/17606192-17606734,17605926-17606012	AT4G37450.1  CDS  gene_syn AGP18, ARABINOGALACTAN PROTEIN 18, ARABINOGALACTAN PROTEIN AGP18, ATAGP18, F6G17.100, F6G17_100  gene AGP18  function AGP18 is a lysine-rich arabinogalactan-protein (AGP) and part of a multi-gene family of glycoproteins with approx. 50 members. It falls into one subclass with AGP17 and AGP19, other lysine-rich AGPs. It is expressed in young leaves, shoots, roots and flowers.  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  product AGP18 (ARABINOGALACTAN PROTEIN 18)  note ARABINOGALACTAN PROTEIN 18 (AGP18); LOCATED IN: anchored to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 109399 Blast hits to 48829 proteins in 1766 species: Archae - 320; Bacteria - 24072; Metazoa - 37764; Fungi - 14381; Plants - 10061; Viruses - 3019; Other Eukaryotes - 19782 (source: NCBI BLink).  protein_id AT4G37450.1p  transcript_id AT4G37450.1  protein_id AT4G37450.1p  transcript_id AT4G37450.1  
At4g37460	chr4:017615407	0.0	C/17615407-17615534,17615188-17615297,17614241-17614923,17614105-17614149,17613871-17613972,17613712-17613792,17613373-17613439,17613150-17613250,17612947-17613054,17612489-17612559,17612344-17612400,17611918-17612023,17611757-17611837,17611370-17611456,17610634-17610840,17610090-17610415,17609847-17609933,17609650-17609749,17609480-17609571,17609354-17609395,17609178-17609268,17608999-17609096,17608623-17608911	AT4G37460.1  CDS  gene_syn F6G17.110, F6G17_110, SRFR1, SUPPRESSOR OF RPS4-RLD 1  gene SRFR1  function Encodes a tetratricopeptide repeat domain containing protein that shows sequence similarity to those of transcriptional repressors in other organisms.Involved in mediating effector-triggered immunity.  go_process defense response to bacterium|GO:0042742|15469494|IGI  go_component nucleus|GO:0005634|18774967|IDA  go_component cytoplasm|GO:0005737|18774967|IDA  go_component perinuclear region of cytoplasm|GO:0048471|18774967|IDA  go_process defense response to bacterium, incompatible interaction|GO:0009816|18774967|IMP  go_process negative regulation of transcription|GO:0016481|18774967|TAS  go_function protein complex scaffold|GO:0032947|18774967|TAS  product SRFR1 (SUPPRESSOR OF RPS4-RLD 1); protein complex scaffold  note SUPPRESSOR OF RPS4-RLD 1 (SRFR1); FUNCTIONS IN: protein complex scaffold; INVOLVED IN: defense response to bacterium, incompatible interaction, defense response to bacterium, negative regulation of transcription; LOCATED IN: nucleus, cytoplasm, perinuclear region of cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: SEC (secret agent); transferase, transferring glycosyl groups (TAIR:AT3G04240.1); Has 29570 Blast hits to 14034 proteins in 1029 species: Archae - 1408; Bacteria - 11701; Metazoa - 5169; Fungi - 1185; Plants - 868; Viruses - 3; Other Eukaryotes - 9236 (source: NCBI BLink).  protein_id AT4G37460.1p  transcript_id AT4G37460.1  protein_id AT4G37460.1p  transcript_id AT4G37460.1  
At4g37470	chr4:017617996	0.0	C/17617996-17618363,17617045-17617489	AT4G37470.1  CDS  gene_syn F6G17.120, F6G17_120  go_process catechol catabolic process, ortho-cleavage|GO:0019615||IEA  go_process protocatechuate catabolic process, ortho-cleavage|GO:0019618||IEA  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: catechol catabolic process, ortho-cleavage, protocatechuate catabolic process, ortho-cleavage; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: esterase/lipase/thioesterase family protein (TAIR:AT3G03990.1); Has 5337 Blast hits to 5337 proteins in 931 species: Archae - 35; Bacteria - 3866; Metazoa - 99; Fungi - 70; Plants - 165; Viruses - 18; Other Eukaryotes - 1084 (source: NCBI BLink).  protein_id AT4G37470.1p  transcript_id AT4G37470.1  protein_id AT4G37470.1p  transcript_id AT4G37470.1  
At4g37480	chr4:017619261	0.0	W/17619261-17619584,17619717-17620653,17620812-17620841,17621122-17621402	AT4G37480.1  CDS  gene_syn F6G17.130, F6G17_130  go_component mitochondrion|GO:0005739||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT3G17830.1); Has 14290 Blast hits to 14289 proteins in 1865 species: Archae - 109; Bacteria - 4834; Metazoa - 3091; Fungi - 1152; Plants - 997; Viruses - 8; Other Eukaryotes - 4099 (source: NCBI BLink).  protein_id AT4G37480.1p  transcript_id AT4G37480.1  protein_id AT4G37480.1p  transcript_id AT4G37480.1  
At4g37483	chr4:017621593	0.0	C/17621593-17621820	AT4G37483.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G37483.1p  transcript_id AT4G37483.1  protein_id AT4G37483.1p  transcript_id AT4G37483.1  
At4g37490	chr4:017624169	0.0	C/17624169-17624208,17623722-17623900,17623439-17623624,17623223-17623348,17622886-17623134,17622644-17622802,17622383-17622564,17622129-17622294	AT4G37490.1  CDS  gene_syn CYC1, CYCB1, CYCB1;1, CYCLIN 1, CYCLIN B1;1, F6G17.140, F6G17_140  gene CYCB1;1  function Cyclin-dependent protein kinase CYCB1;1. Functions as an effector of growth control at G2/M. Regulated by TCP20.  go_component nucleus|GO:0005634||IEA  go_process regulation of cell growth|GO:0001558|16123132|IMP  go_process response to gamma radiation|GO:0010332|17227549|IEP  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase regulator activity|GO:0016538||ISS  product CYCB1;1 (CYCLIN B1;1); cyclin-dependent protein kinase regulator  note CYCLIN B1;1 (CYCB1;1); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle, regulation of cell growth, response to gamma radiation; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYC1BAT; cyclin-dependent protein kinase regulator (TAIR:AT5G06150.1); Has 3381 Blast hits to 3378 proteins in 300 species: Archae - 0; Bacteria - 2; Metazoa - 1735; Fungi - 377; Plants - 750; Viruses - 35; Other Eukaryotes - 482 (source: NCBI BLink).  protein_id AT4G37490.1p  transcript_id AT4G37490.1  protein_id AT4G37490.1p  transcript_id AT4G37490.1  
At4g37500	chr4:017625388	0.0	W/17625388-17625627,17625781-17625915	AT4G37500.1  CDS  gene_syn F6G17.150, F6G17_150  go_component mitochondrion|GO:0005739||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product xanthine dehydrogenase family protein  note xanthine dehydrogenase family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding (InterPro:IPR008274); BEST Arabidopsis thaliana protein match is: XDH1 (XANTHINE DEHYDROGENASE 1); xanthine dehydrogenase (TAIR:AT4G34890.1); Has 1515 Blast hits to 1515 proteins in 351 species: Archae - 1; Bacteria - 435; Metazoa - 508; Fungi - 54; Plants - 29; Viruses - 0; Other Eukaryotes - 488 (source: NCBI BLink).  protein_id AT4G37500.1p  transcript_id AT4G37500.1  protein_id AT4G37500.1p  transcript_id AT4G37500.1  
At4g37510	chr4:017628052	0.0	C/17628052-17628854,17627141-17627345,17626846-17627046,17626674-17626760,17626259-17626576	AT4G37510.1  CDS  gene_syn F6G17.160, F6G17_160  go_component chloroplast|GO:0009507||IEA  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_function ribonuclease III activity|GO:0004525||IEA  go_process RNA processing|GO:0006396||ISS  go_function RNA binding|GO:0003723||ISS  go_function ribonuclease III activity|GO:0004525||ISS  product ribonuclease III family protein  note ribonuclease III family protein; FUNCTIONS IN: RNA binding, ribonuclease III activity; INVOLVED IN: RNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease III (InterPro:IPR000999); Has 462 Blast hits to 460 proteins in 156 species: Archae - 0; Bacteria - 282; Metazoa - 0; Fungi - 22; Plants - 20; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).  protein_id AT4G37510.1p  transcript_id AT4G37510.1  protein_id AT4G37510.1p  transcript_id AT4G37510.1  
At4g37520	chr4:017631704	0.0	W/17631704-17631919,17632002-17632202,17632276-17632441,17632654-17633060	AT4G37520.1  CDS  gene_syn F19F18.10, F19F18_10  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component cytoplasm|GO:0005737|15610358|IDA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase 50 (PER50) (P50) (PRXR2)  note peroxidase 50 (PER50) (P50) (PRXR2); FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT4G37530.1); Has 3003 Blast hits to 2988 proteins in 241 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 172; Plants - 2780; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT4G37520.1p  transcript_id AT4G37520.1  protein_id AT4G37520.1p  transcript_id AT4G37520.1  
At4g37530	chr4:017634786	0.0	W/17634786-17635001,17635088-17635288,17635378-17635543,17635676-17635933,17636001-17636008	AT4G37530.2  CDS  gene_syn F19F18.20, F19F18_20  go_component endomembrane system|GO:0012505||IEA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase 50 (PER50) (P50) (PRXR2) (TAIR:AT4G37520.1); Has 2905 Blast hits to 2900 proteins in 221 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 118; Plants - 2746; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT4G37530.2p  transcript_id AT4G37530.2  protein_id AT4G37530.2p  transcript_id AT4G37530.2  
At4g37530	chr4:017634786	0.0	W/17634786-17635001,17635088-17635288,17635378-17635543,17635676-17636082	AT4G37530.1  CDS  gene_syn F19F18.20, F19F18_20  go_component endomembrane system|GO:0012505||IEA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase 50 (PER50) (P50) (PRXR2) (TAIR:AT4G37520.1); Has 2979 Blast hits to 2964 proteins in 237 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 152; Plants - 2783; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT4G37530.1p  transcript_id AT4G37530.1  protein_id AT4G37530.1p  transcript_id AT4G37530.1  
At4g37540	chr4:017640326	0.0	C/17640326-17640509,17639649-17640187	AT4G37540.1  CDS  gene_syn F19F18.30, F19F18_30, LBD39, LOB DOMAIN-CONTAINING PROTEIN 39  gene LBD39  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product LBD39 (LOB DOMAIN-CONTAINING PROTEIN 39)  note LOB DOMAIN-CONTAINING PROTEIN 39 (LBD39); INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38) (TAIR:AT3G49940.1); Has 313 Blast hits to 313 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 313; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G37540.1p  transcript_id AT4G37540.1  protein_id AT4G37540.1p  transcript_id AT4G37540.1  
At4g37550	chr4:017643684	0.0	W/17643684-17643902,17643997-17644234,17644355-17644545,17644641-17644876,17644985-17645228,17645342-17645449,17645607-17645729	AT4G37550.1  CDS  gene_syn F19F18.40, F19F18_40  go_component vacuole|GO:0005773|15539469|IDA  go_process metabolic process|GO:0008152||IEA  go_function hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides|GO:0016811||IEA  go_process metabolic process|GO:0008152||ISS  go_function formamidase activity|GO:0004328||ISS  product formamidase, putative / formamide amidohydrolase, putative  note formamidase, putative / formamide amidohydrolase, putative; FUNCTIONS IN: formamidase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; INVOLVED IN: metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acetamidase/Formamidase (InterPro:IPR004304); BEST Arabidopsis thaliana protein match is: formamidase, putative / formamide amidohydrolase, putative (TAIR:AT4G37560.1); Has 931 Blast hits to 917 proteins in 259 species: Archae - 41; Bacteria - 569; Metazoa - 0; Fungi - 79; Plants - 32; Viruses - 0; Other Eukaryotes - 210 (source: NCBI BLink).  protein_id AT4G37550.1p  transcript_id AT4G37550.1  protein_id AT4G37550.1p  transcript_id AT4G37550.1  
At4g37550	chr4:017643684	0.0	W/17643684-17643902,17643997-17644234,17644355-17644545,17644641-17644876,17644985-17645249	AT4G37550.2  CDS  gene_syn F19F18.40, F19F18_40  go_component vacuole|GO:0005773|15539469|IDA  go_process metabolic process|GO:0008152||IEA  go_function hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides|GO:0016811||IEA  go_process metabolic process|GO:0008152||ISS  go_function formamidase activity|GO:0004328||ISS  product formamidase, putative / formamide amidohydrolase, putative  note formamidase, putative / formamide amidohydrolase, putative; FUNCTIONS IN: formamidase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; INVOLVED IN: metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acetamidase/Formamidase (InterPro:IPR004304); BEST Arabidopsis thaliana protein match is: formamidase, putative / formamide amidohydrolase, putative (TAIR:AT4G37560.1); Has 928 Blast hits to 914 proteins in 259 species: Archae - 41; Bacteria - 569; Metazoa - 0; Fungi - 79; Plants - 32; Viruses - 0; Other Eukaryotes - 207 (source: NCBI BLink).  protein_id AT4G37550.2p  transcript_id AT4G37550.2  protein_id AT4G37550.2p  transcript_id AT4G37550.2  
At4g37560	chr4:017646489	0.0	W/17646489-17646707,17646789-17647026,17647143-17647333,17647406-17647641,17647765-17648008,17648107-17648214,17648335-17648457	AT4G37560.1  CDS  gene_syn F19F18.50, F19F18_50  go_process metabolic process|GO:0008152||IEA  go_function hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides|GO:0016811||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function formamidase activity|GO:0004328||ISS  product formamidase, putative / formamide amidohydrolase, putative  note formamidase, putative / formamide amidohydrolase, putative; FUNCTIONS IN: formamidase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acetamidase/Formamidase (InterPro:IPR004304); BEST Arabidopsis thaliana protein match is: formamidase, putative / formamide amidohydrolase, putative (TAIR:AT4G37550.1); Has 930 Blast hits to 919 proteins in 259 species: Archae - 41; Bacteria - 569; Metazoa - 0; Fungi - 81; Plants - 32; Viruses - 0; Other Eukaryotes - 207 (source: NCBI BLink).  protein_id AT4G37560.1p  transcript_id AT4G37560.1  protein_id AT4G37560.1p  transcript_id AT4G37560.1  
At4g37570	chr4:017655173	0.0	C/17655173-17656557	AT4G37570.1  mRNA_TE_gene  pseudo  gene_syn F19F18.60, F19F18_60  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G52410.1); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Protein of unknown function DUF321; (InterPro:IPR005529)  
At4g37580	chr4:017658932	0.0	W/17658932-17659093,17659435-17659610,17659691-17660564	AT4G37580.1  CDS  gene_syn CONSTITUTIVE PHOTOMORPHOGENIC 3, COP3, F19F18.70, F19F18_70, HLS1, HOOKLESS 1, UNS2, UNUSUAL SUGAR RESPONSE 2  gene HLS1  function involved in apical hook development. putative N-acetyltransferase  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_process photomorphogenesis|GO:0009640|12271066|IMP  go_process response to ethylene stimulus|GO:0009723|7768447|IMP  go_process auxin mediated signaling pathway|GO:0009734|8612271|IMP  go_process unidimensional cell growth|GO:0009826|8612271|IMP  go_function N-acetyltransferase activity|GO:0008080|8612271|ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product HLS1 (HOOKLESS 1); N-acetyltransferase  note HOOKLESS 1 (HLS1); FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: response to ethylene stimulus, auxin mediated signaling pathway, unidimensional cell growth, photomorphogenesis, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, sperm cell, embryo, flower, seed; EXPRESSED DURING: seedling growth, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: GCN5-related N-acetyltransferase (GNAT) family protein (TAIR:AT2G23060.1); Has 61 Blast hits to 61 proteins in 14 species: Archae - 6; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G37580.1p  transcript_id AT4G37580.1  protein_id AT4G37580.1p  transcript_id AT4G37580.1  
At4g37590	chr4:017665238	0.0	C/17665238-17665299,17665032-17665101,17663818-17664927,17663080-17663580	AT4G37590.1  CDS  gene_syn F19F18.80, F19F18_80, NAKED PINS IN YUC MUTANTS 5, NPY5  gene NPY5  function A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.  go_function signal transducer activity|GO:0004871||IEA  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process response to light stimulus|GO:0009416||ISS  go_process flower development|GO:0009908|19075219|IGI  go_function signal transducer activity|GO:0004871||ISS  product NPY5 (NAKED PINS IN YUC MUTANTS 5); protein binding / signal transducer  note NAKED PINS IN YUC MUTANTS 5 (NPY5); FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: flower development, response to light stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: NPY4 (NAKED PINS IN YUC MUTANTS 4); protein binding / signal transducer (TAIR:AT2G23050.1); Has 425 Blast hits to 415 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 422; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G37590.1p  transcript_id AT4G37590.1  protein_id AT4G37590.1p  transcript_id AT4G37590.1  
At4g37608	chr4:017669825	0.0	W/17669825-17669856,17669958-17670030,17670123-17670188,17670337-17670429	AT4G37608.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 13 Blast hits to 13 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G37608.1p  transcript_id AT4G37608.1  protein_id AT4G37608.1p  transcript_id AT4G37608.1  
At4g37610	chr4:017671771	0.0	C/17671771-17671992,17671549-17671679,17671148-17671454,17670606-17671052	AT4G37610.1  CDS  gene_syn BT5, BTB AND TAZ DOMAIN PROTEIN 5, F19F18.100, F19F18_100  gene BT5  function BTB and TAZ domain protein. Located in cytoplasm and expressed in fruit, flower and leaves.  go_component cytoplasm|GO:0005737|19054356|IDA  go_process response to auxin stimulus|GO:0009733|19054356|IEP  go_process response to chitin|GO:0010200|17722694|IEP  go_function protein binding|GO:0005515||ISS  go_function transcription regulator activity|GO:0030528|10748221|TAS  product BT5 (BTB AND TAZ DOMAIN PROTEIN 5); protein binding / transcription regulator  note BTB AND TAZ DOMAIN PROTEIN 5 (BT5); FUNCTIONS IN: protein binding, transcription regulator activity; INVOLVED IN: response to auxin stimulus, response to chitin; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), Zinc finger, TAZ-type (InterPro:IPR000197), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BT4 (BTB AND TAZ DOMAIN PROTEIN 4); protein binding / transcription regulator (TAIR:AT5G67480.2); Has 1143 Blast hits to 1141 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 792; Fungi - 2; Plants - 299; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT4G37610.1p  transcript_id AT4G37610.1  protein_id AT4G37610.1p  transcript_id AT4G37610.1  
At4g37620	chr4:017674191	0.0	C/17674191-17674589	AT4G37620.1  mRNA_TE_gene  pseudo  gene_syn F19F18.110, F19F18_110  note Transposable element gene, similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G09490.1); similar to 80C09_17 [Brassica rapa subsp. pekinensis] (GB:AAZ41828.1); contains InterPro domain Ribonuclease H; (InterPro:IPR002156); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)  
At4g37630	chr4:017679497	0.0	W/17679497-17679739,17679820-17679906,17679991-17680300,17680376-17680524,17680606-17680788	AT4G37630.1  CDS  gene_syn CYCD5;1, F19F18.120, F19F18_120, cyclin d5;1  gene CYCD5;1  function core cell cycle genes  go_component cellular_component|GO:0005575||ND  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase activity|GO:0004693||ISS  product CYCD5;1 (cyclin d5;1); cyclin-dependent protein kinase  note cyclin d5;1 (CYCD5;1); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCD1;1 (CYCLIN D1;1); cyclin-dependent protein kinase regulator (TAIR:AT1G70210.1); Has 2226 Blast hits to 2225 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 1181; Fungi - 242; Plants - 571; Viruses - 0; Other Eukaryotes - 232 (source: NCBI BLink).  protein_id AT4G37630.1p  transcript_id AT4G37630.1  protein_id AT4G37630.1p  transcript_id AT4G37630.1  
At4g37630	chr4:017679497	0.0	W/17679497-17679739,17679820-17679906,17679997-17680300,17680376-17680524,17680606-17680788	AT4G37630.2  CDS  gene_syn CYCD5;1, F19F18.120, F19F18_120, cyclin d5;1  gene CYCD5;1  function core cell cycle genes  go_component cellular_component|GO:0005575||ND  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase activity|GO:0004693||ISS  product CYCD5;1 (cyclin d5;1); cyclin-dependent protein kinase  note cyclin d5;1 (CYCD5;1); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCD1;1 (CYCLIN D1;1); cyclin-dependent protein kinase regulator (TAIR:AT1G70210.1); Has 2212 Blast hits to 2211 proteins in 237 species: Archae - 0; Bacteria - 0; Metazoa - 1193; Fungi - 204; Plants - 574; Viruses - 0; Other Eukaryotes - 241 (source: NCBI BLink).  protein_id AT4G37630.2p  transcript_id AT4G37630.2  protein_id AT4G37630.2p  transcript_id AT4G37630.2  
At4g37640	chr4:017686635	0.0	C/17686635-17686808,17686460-17686514,17684423-17686368,17684183-17684341,17683932-17684103,17683546-17683844,17683225-17683464	AT4G37640.1  CDS  gene_syn ACA2, CALCIUM ATPASE 2, F19F18.130, F19F18_130  gene ACA2  function Encodes a calmodulin-regulated Ca(2+)-pump located in the endoplasmic reticulum. Belongs to plant 2B ATPase s with an N-terminal autoinhibitor.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum membrane|GO:0005789|10823962|IDA  go_process transport|GO:0006810|10823962|IDA  go_function calcium-transporting ATPase activity|GO:0005388|10631259|IDA  go_function calcium-transporting ATPase activity|GO:0005388|12805592|ISS  go_function calcium-transporting ATPase activity|GO:0005388||ISS  go_function calmodulin binding|GO:0005516|11782485|TAS  go_function calmodulin binding|GO:0005516|9422775|IDA  go_function calcium ion transmembrane transporter activity|GO:0015085|9422775|IDA  product ACA2 (CALCIUM ATPASE 2); calcium ion transmembrane transporter/ calcium-transporting ATPase/ calmodulin binding  note CALCIUM ATPASE 2 (ACA2); FUNCTIONS IN: calmodulin binding, calcium-transporting ATPase activity, calcium ion transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: endoplasmic reticulum, plasma membrane, endoplasmic reticulum membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, calcium-transporting, PMCA-type (InterPro:IPR006408), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7) (TAIR:AT2G22950.1); Has 26269 Blast hits to 19871 proteins in 1838 species: Archae - 535; Bacteria - 16135; Metazoa - 3364; Fungi - 1829; Plants - 1118; Viruses - 3; Other Eukaryotes - 3285 (source: NCBI BLink).  protein_id AT4G37640.1p  transcript_id AT4G37640.1  protein_id AT4G37640.1p  transcript_id AT4G37640.1  
At4g37650	chr4:017691871	0.0	W/17691871-17693466	AT4G37650.1  CDS  gene_syn F19F18.140, F19F18_140, SGR7, SHOOT GRAVITROPISM 7, SHORT ROOT, SHR  gene SHR  function Involved in radial organization of the root and shoot axial organs. Essential for normal shoot gravitropism. The protein moves in a highly specific manner from the cells of the stele in which it is synthesized outward. Movement requires sequences within the GRAS and VHIID domains.  go_component nucleus|GO:0005634|11565032|IDA  go_process asymmetric cell division|GO:0008356|10850497|IMP  go_process radial pattern formation|GO:0009956|10850497|IMP  go_process regulation of hormone metabolic process|GO:0032350|16640459|NAS  go_function transcription factor activity|GO:0003700|10850497|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|16640459|IEP  go_function transcription factor activity|GO:0003700||ISS  go_function protein binding|GO:0005515|17446396|IPI  go_function protein binding|GO:0005515|17785527|IPI  go_function sequence-specific DNA binding|GO:0043565|16640459|IDA  go_function sequence-specific DNA binding|GO:0043565|17446396|IDA  product SHR (SHORT ROOT); protein binding / sequence-specific DNA binding / transcription factor  note SHORT ROOT (SHR); FUNCTIONS IN: protein binding, transcription factor activity, sequence-specific DNA binding; INVOLVED IN: radial pattern formation, regulation of hormone metabolic process, asymmetric cell division; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: scarecrow transcription factor family protein (TAIR:AT3G49950.1); Has 1367 Blast hits to 1345 proteins in 187 species: Archae - 0; Bacteria - 4; Metazoa - 9; Fungi - 12; Plants - 1329; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT4G37650.1p  transcript_id AT4G37650.1  protein_id AT4G37650.1p  transcript_id AT4G37650.1  
At4g37660	chr4:017695543	0.0	W/17695543-17696046	AT4G37660.1  CDS  gene_syn F19F18.150, F19F18_150  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L12 family protein  note ribosomal protein L12 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L12, chloroplast (InterPro:IPR015608), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719), Ribosomal protein L7/L12, C-terminal (InterPro:IPR013823); BEST Arabidopsis thaliana protein match is: ribosomal protein L12 family protein (TAIR:AT1G70190.1); Has 5731 Blast hits to 5731 proteins in 1563 species: Archae - 0; Bacteria - 3202; Metazoa - 131; Fungi - 85; Plants - 177; Viruses - 0; Other Eukaryotes - 2136 (source: NCBI BLink).  protein_id AT4G37660.1p  transcript_id AT4G37660.1  protein_id AT4G37660.1p  transcript_id AT4G37660.1  
At4g37670	chr4:017698471	0.0	C/17698471-17698836,17698186-17698273,17697868-17698076,17697620-17697771,17697095-17697533,17696917-17697014,17696721-17696832,17696472-17696639	AT4G37670.1  CDS  gene_syn F19F18.160, F19F18_160  go_component cytoplasm|GO:0005737||IEA  go_process arginine biosynthetic process|GO:0006526||IEA  go_process metabolic process|GO:0008152||IEA  go_process amino acid biosynthetic process|GO:0008652||IEA  go_function amino-acid N-acetyltransferase activity|GO:0004042||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_process arginine biosynthetic process|GO:0006526||ISS  go_function amino-acid N-acetyltransferase activity|GO:0004042||ISS  product GCN5-related N-acetyltransferase (GNAT) family protein / amino acid kinase family protein  note GCN5-related N-acetyltransferase (GNAT) family protein / amino acid kinase family protein; FUNCTIONS IN: amino-acid N-acetyltransferase activity, N-acetyltransferase activity; INVOLVED IN: arginine biosynthetic process, amino acid biosynthetic process, metabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Aspartate/glutamate/uridylate kinase (InterPro:IPR001048), Acyl-CoA N-acyltransferase (InterPro:IPR016181), Amino-acid N-acetyltransferase (ArgA) (InterPro:IPR010167); BEST Arabidopsis thaliana protein match is: GCN5-related N-acetyltransferase (GNAT) family protein / amino acid kinase family protein (TAIR:AT2G22910.1); Has 4775 Blast hits to 3848 proteins in 1053 species: Archae - 96; Bacteria - 3496; Metazoa - 0; Fungi - 91; Plants - 72; Viruses - 0; Other Eukaryotes - 1020 (source: NCBI BLink).  protein_id AT4G37670.1p  transcript_id AT4G37670.1  protein_id AT4G37670.1p  transcript_id AT4G37670.1  
At4g37670	chr4:017698471	0.0	C/17698471-17698836,17698186-17698273,17697868-17698076,17697620-17697771,17697095-17697533,17696917-17697014,17696721-17696832,17696480-17696639,17696179-17696396	AT4G37670.2  CDS  gene_syn F19F18.160, F19F18_160  go_component cytoplasm|GO:0005737||IEA  go_process arginine biosynthetic process|GO:0006526||IEA  go_process metabolic process|GO:0008152||IEA  go_process amino acid biosynthetic process|GO:0008652||IEA  go_function amino-acid N-acetyltransferase activity|GO:0004042||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_process arginine biosynthetic process|GO:0006526||ISS  go_function amino-acid N-acetyltransferase activity|GO:0004042||ISS  product GCN5-related N-acetyltransferase (GNAT) family protein / amino acid kinase family protein  note GCN5-related N-acetyltransferase (GNAT) family protein / amino acid kinase family protein; FUNCTIONS IN: amino-acid N-acetyltransferase activity, N-acetyltransferase activity; INVOLVED IN: amino acid biosynthetic process, arginine biosynthetic process, metabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Aspartate/glutamate/uridylate kinase (InterPro:IPR001048), Acyl-CoA N-acyltransferase (InterPro:IPR016181), Amino-acid N-acetyltransferase (ArgA) (InterPro:IPR010167); BEST Arabidopsis thaliana protein match is: GCN5-related N-acetyltransferase (GNAT) family protein / amino acid kinase family protein (TAIR:AT2G22910.1); Has 5073 Blast hits to 4151 proteins in 1067 species: Archae - 96; Bacteria - 3736; Metazoa - 0; Fungi - 91; Plants - 72; Viruses - 0; Other Eukaryotes - 1078 (source: NCBI BLink).  protein_id AT4G37670.2p  transcript_id AT4G37670.2  protein_id AT4G37670.2p  transcript_id AT4G37670.2  
At4g37680	chr4:017701231	0.0	W/17701231-17701481,17701574-17701826,17701915-17702568	AT4G37680.1  CDS  gene_syn F19F18.170, F19F18_170, HHP4, heptahelical protein 4  gene HHP4  function heptahelical transmembrane protein HHP4  go_component integral to membrane|GO:0016021||IEA  go_process response to hormone stimulus|GO:0009725|16263907|IEP  go_process response to sucrose stimulus|GO:0009744|16263907|IEP  go_function receptor activity|GO:0004872|16263907|ISS  product HHP4 (heptahelical protein 4); receptor  note heptahelical protein 4 (HHP4); FUNCTIONS IN: receptor activity; INVOLVED IN: response to hormone stimulus, response to sucrose stimulus; LOCATED IN: integral to membrane; EXPRESSED IN: stem, fruit, flower, root, leaf; CONTAINS InterPro DOMAIN/s: Hly-III related (InterPro:IPR004254); BEST Arabidopsis thaliana protein match is: HHP5 (heptahelical protein 5); receptor (TAIR:AT4G38320.1); Has 2051 Blast hits to 1669 proteins in 383 species: Archae - 0; Bacteria - 469; Metazoa - 1003; Fungi - 313; Plants - 117; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT4G37680.1p  transcript_id AT4G37680.1  protein_id AT4G37680.1p  transcript_id AT4G37680.1  
At4g37682	chr4:017703461	0.0	W/17703461-17703519,17703603-17703642,17703716-17703844	AT4G37682.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1399 (InterPro:IPR009836); BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G37900.1); Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G37682.1p  transcript_id AT4G37682.1  protein_id AT4G37682.1p  transcript_id AT4G37682.1  
At4g37685	chr4:017705049	0.0	W/17705049-17705141,17705180-17705338,17705425-17705476,17705598-17705729,17706034-17706089	AT4G37685.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G37685.1p  transcript_id AT4G37685.1  protein_id AT4G37685.1p  transcript_id AT4G37685.1  
At4g37690	chr4:017708303	0.0	W/17708303-17709601	AT4G37690.1  CDS  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product galactosyl transferase GMA12/MNN10 family protein  note galactosyl transferase GMA12/MNN10 family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; CONTAINS InterPro DOMAIN/s: Galactosyl transferase (InterPro:IPR008630); BEST Arabidopsis thaliana protein match is: galactosyl transferase GMA12/MNN10 family protein (TAIR:AT2G22900.1); Has 326 Blast hits to 326 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 130; Plants - 176; Viruses - 2; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT4G37690.1p  transcript_id AT4G37690.1  protein_id AT4G37690.1p  transcript_id AT4G37690.1  
At4g37700	chr4:017710387	0.0	C/17710387-17710833	AT4G37700.1  CDS  gene_syn T28I19.2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65925.1); Has 32 Blast hits to 32 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G37700.1p  transcript_id AT4G37700.1  protein_id AT4G37700.1p  transcript_id AT4G37700.1  
At4g37705	chr4:017712564	0.0	W/17712564-17716691	AT4G37705.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 9.5e-203 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At4g37710	chr4:017718234	0.0	W/17718234-17718605	AT4G37710.1  CDS  gene_syn T28I19.3  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product VQ motif-containing protein  note VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT2G22880.1); Has 11 Blast hits to 11 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G37710.1p  transcript_id AT4G37710.1  protein_id AT4G37710.1p  transcript_id AT4G37710.1  
At4g37720	chr4:017719190	0.0	C/17719190-17719318,17718961-17719095	AT4G37720.1  CDS  gene_syn ATPSK6, PHYTOSULFOKINE 6 PRECURSOR, T28I19.1  gene ATPSK6  function Probable phytosulfokines 6 precursor, coding for a unique plant peptide growth factor.  go_function growth factor activity|GO:0008083||IEA  go_component extracellular matrix|GO:0031012|11706167|ISS  go_process cell proliferation|GO:0008283|11706167|ISS  go_process organ morphogenesis|GO:0009887|11706167|ISS  go_process cell differentiation|GO:0030154|11706167|ISS  product ATPSK6 (PHYTOSULFOKINE 6 PRECURSOR); growth factor  note PHYTOSULFOKINE 6 PRECURSOR (ATPSK6); FUNCTIONS IN: growth factor activity; INVOLVED IN: cell differentiation, cell proliferation, organ morphogenesis; LOCATED IN: extracellular matrix; CONTAINS InterPro DOMAIN/s: Phytosulfokine (InterPro:IPR009438); BEST Arabidopsis thaliana protein match is: ATPSK2 (PHYTOSULFOKINE 2 PRECURSOR); growth factor (TAIR:AT2G22860.1); Has 74 Blast hits to 74 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G37720.1p  transcript_id AT4G37720.1  protein_id AT4G37720.1p  transcript_id AT4G37720.1  
At4g37730	chr4:017723800	0.0	W/17723800-17724717	AT4G37730.1  CDS  gene_syn Arabidopsis thaliana basic leucine-zipper 7, AtbZIP7, T28I19.10, T28I19_10  gene AtbZIP7  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  product AtbZIP7 (Arabidopsis thaliana basic leucine-zipper 7); DNA binding / transcription factor  note Arabidopsis thaliana basic leucine-zipper 7 (AtbZIP7); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: AtbZIP6 (Arabidopsis thaliana basic leucine-zipper 6); DNA binding / transcription factor (TAIR:AT2G22850.1); Has 1154 Blast hits to 1152 proteins in 104 species: Archae - 0; Bacteria - 2; Metazoa - 50; Fungi - 14; Plants - 1060; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT4G37730.1p  transcript_id AT4G37730.1  protein_id AT4G37730.1p  transcript_id AT4G37730.1  
At4g37740	chr4:017727189	0.0	C/17727189-17727609,17726884-17727096,17726228-17726579,17725533-17726154	AT4G37740.1  CDS  gene_syn AtGRF2, GROWTHREGULATING FACTOR 2, T28I19.20, T28I19_20  gene AtGRF2  function Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Mutants result in smaller leaves indicating the role of the gene in leaf development. Expressed in root, shoot and flower  go_component nucleus|GO:0005634|12974814|ISS  go_process leaf development|GO:0048366|12974814|IGI  go_function transcription activator activity|GO:0016563|12974814|ISS  product AtGRF2 (GROWTHREGULATING FACTOR 2); transcription activator  note GROWTHREGULATING FACTOR 2 (AtGRF2); FUNCTIONS IN: transcription activator activity; INVOLVED IN: leaf development; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine-Leucine-Glutamine, QLQ (InterPro:IPR014978), WRC (InterPro:IPR014977); BEST Arabidopsis thaliana protein match is: AtGRF1 (GROWTH-REGULATING FACTOR 1); transcription activator (TAIR:AT2G22840.1); Has 634 Blast hits to 565 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 103; Fungi - 20; Plants - 356; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink).  protein_id AT4G37740.1p  transcript_id AT4G37740.1  protein_id AT4G37740.1p  transcript_id AT4G37740.1  
At4g37750	chr4:017739782	0.0	W/17739782-17740112,17740258-17740792,17740880-17740962,17741106-17741114,17741225-17741313,17741396-17741520,17741607-17741683,17741771-17742189	AT4G37750.1  CDS  gene_syn AINTEGUMENTA, ANT, CKC, CKC1, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, DRAGON, DRG, T28I19.30, T28I19_30  gene ANT  function ANT is required for control of cell proliferation and encodes a putative transcriptional regulator similar to AP2. Loss of function alleles have reduced fertility, abnormal ovules and abnormal lateral organs. Expressed specifically in the chalaza and in floral organ primordia.  go_component nucleus|GO:0005634|10948255|IC  go_component nucleus|GO:0005634|11058102|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|8742706|TAS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process gamete generation|GO:0007276|8742706|IMP  go_process organ morphogenesis|GO:0009887|9636071|IMP  go_process regulation of cell proliferation|GO:0042127|10639184|IMP  go_function DNA binding|GO:0003677|11058102|IDA  go_function DNA binding|GO:0003677|9192694|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|10948255|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product ANT (AINTEGUMENTA); DNA binding / transcription factor  note AINTEGUMENTA (ANT); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: organ morphogenesis, regulation of transcription, DNA-dependent, regulation of cell proliferation, gamete generation; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT1G72570.1); Has 4572 Blast hits to 3335 proteins in 210 species: Archae - 0; Bacteria - 4; Metazoa - 51; Fungi - 8; Plants - 4385; Viruses - 2; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT4G37750.1p  transcript_id AT4G37750.1  protein_id AT4G37750.1p  transcript_id AT4G37750.1  
At4g37760	chr4:017744085	0.0	W/17744085-17744309,17744714-17744825,17744920-17745094,17745186-17745354,17745441-17746214,17746304-17746426	AT4G37760.1  CDS  gene_syn SQE3, T28I19.40, T28I19_40, squalene epoxidase 3  gene SQE3  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process response to wounding|GO:0009611|16021335|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16021335|IEP  go_process sterol biosynthetic process|GO:0016126|10350086|TAS  go_process sterol biosynthetic process|GO:0016126|17426032|TAS  go_function squalene monooxygenase activity|GO:0004506|17426032|IGI  product SQE3 (squalene epoxidase 3); squalene monooxygenase  note squalene epoxidase 3 (SQE3); FUNCTIONS IN: squalene monooxygenase activity; INVOLVED IN: response to jasmonic acid stimulus, sterol biosynthetic process, response to wounding; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Squalene epoxidase (InterPro:IPR013698), Aromatic-ring hydroxylase-like (InterPro:IPR003042), FAD dependent oxidoreductase (InterPro:IPR006076); BEST Arabidopsis thaliana protein match is: SQE2 (squalene epoxidase 2); FAD binding / oxidoreductase/ squalene monooxygenase (TAIR:AT2G22830.1); Has 2057 Blast hits to 2057 proteins in 557 species: Archae - 21; Bacteria - 1036; Metazoa - 128; Fungi - 155; Plants - 88; Viruses - 0; Other Eukaryotes - 629 (source: NCBI BLink).  protein_id AT4G37760.1p  transcript_id AT4G37760.1  protein_id AT4G37760.1p  transcript_id AT4G37760.1  
At4g37770	chr4:017752222	0.0	W/17752222-17752368,17752476-17752607,17752705-17752865,17752956-17753925	AT4G37770.1  CDS  gene_syn ACS8, T28I19.50, T28I19_50  gene ACS8  function Encodes an auxin inducible ACC synthase.  go_component cellular_component|GO:0005575||ND  go_process ethylene biosynthetic process|GO:0009693|12972669|TAS  go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847|12968022|IDA  go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847|7642574|ISS  product ACS8; 1-aminocyclopropane-1-carboxylate synthase  note ACS8; FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate synthase activity; INVOLVED IN: ethylene biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, male gametophyte, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I and II (InterPro:IPR004839), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: ACS4 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 4); 1-aminocyclopropane-1-carboxylate synthase (TAIR:AT2G22810.1); Has 19821 Blast hits to 19818 proteins in 1673 species: Archae - 514; Bacteria - 11435; Metazoa - 578; Fungi - 473; Plants - 924; Viruses - 0; Other Eukaryotes - 5897 (source: NCBI BLink).  protein_id AT4G37770.1p  transcript_id AT4G37770.1  protein_id AT4G37770.1p  transcript_id AT4G37770.1  
At4g37780	chr4:017759391	0.0	C/17759391-17759526,17759165-17759294,17758404-17759055	AT4G37780.1  CDS  gene_syn ATMYB87, MYB DOMAIN PROTEIN 87, MYB87, T28I19.60, T28I19_60  gene MYB87  function encoded by the Myb-like transcription factor MYB87, regulates axillary meristem formation, expressed throughout the plant. Member of the R2R3 factor gene family.  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB87 (MYB DOMAIN PROTEIN 87); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 87 (MYB87); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB68 (MYB DOMAIN PROTEIN 68); DNA binding / transcription factor (TAIR:AT5G65790.1); Has 6024 Blast hits to 5746 proteins in 350 species: Archae - 0; Bacteria - 0; Metazoa - 507; Fungi - 292; Plants - 3756; Viruses - 3; Other Eukaryotes - 1466 (source: NCBI BLink).  protein_id AT4G37780.1p  transcript_id AT4G37780.1  protein_id AT4G37780.1p  transcript_id AT4G37780.1  
At4g37790	chr4:017768241	0.0	W/17768241-17768690,17768786-17768865,17768966-17769272	AT4G37790.1  CDS  gene_syn HAT22, HOMEOBOX PROTEIN, T28I19.70, T28I19_70  gene HAT22  function Encodes homeobox protein HAT22, member of the HD-Zip II family.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to cytokinin stimulus|GO:0009735|16212609|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  product HAT22; transcription factor  note HAT22; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, response to cytokinin stimulus; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: HAT9; DNA binding / transcription factor (TAIR:AT2G22800.1); Has 5312 Blast hits to 5300 proteins in 366 species: Archae - 0; Bacteria - 0; Metazoa - 3589; Fungi - 200; Plants - 1430; Viruses - 3; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT4G37790.1p  transcript_id AT4G37790.1  protein_id AT4G37790.1p  transcript_id AT4G37790.1  
At4g37800	chr4:017777180	0.0	C/17777180-17777372,17776989-17777089,17776711-17776907,17775703-17776093	AT4G37800.1  CDS  gene_syn T28I19.80, T28I19_80  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process cellular glucan metabolic process|GO:0006073||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762||IEA  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative  note xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative (TAIR:AT5G65730.1); Has 1353 Blast hits to 1347 proteins in 197 species: Archae - 0; Bacteria - 162; Metazoa - 0; Fungi - 298; Plants - 807; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT4G37800.1p  transcript_id AT4G37800.1  protein_id AT4G37800.1p  transcript_id AT4G37800.1  
At4g37810	chr4:017780970	0.0	W/17780970-17781051,17781146-17781180,17781275-17781544	AT4G37810.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1); Has 55 Blast hits to 55 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G37810.1p  transcript_id AT4G37810.1  protein_id AT4G37810.1p  transcript_id AT4G37810.1  
At4g37820	chr4:017785692	0.0	W/17785692-17787290	AT4G37820.1  CDS  gene_syn T28I19.100, T28I19_100  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G22795.1); Has 363989 Blast hits to 137148 proteins in 2858 species: Archae - 1191; Bacteria - 38325; Metazoa - 151130; Fungi - 38393; Plants - 14217; Viruses - 2059; Other Eukaryotes - 118674 (source: NCBI BLink).  protein_id AT4G37820.1p  transcript_id AT4G37820.1  protein_id AT4G37820.1p  transcript_id AT4G37820.1  
At4g37830	chr4:017788648	0.0	C/17788648-17788762,17788198-17788304,17787911-17787923,17787672-17787715	AT4G37830.2  CDS  go_function cytochrome-c oxidase activity|GO:0004129||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  product cytochrome c oxidase-related  note cytochrome c oxidase-related; FUNCTIONS IN: cytochrome-c oxidase activity; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase, subunit VIa (InterPro:IPR001349); Has 24 Blast hits to 24 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G37830.2p  transcript_id AT4G37830.2  protein_id AT4G37830.2p  transcript_id AT4G37830.2  
At4g37830	chr4:017788648	0.0	C/17788648-17788762,17788198-17788304,17787911-17787953,17787672-17787715	AT4G37830.1  CDS  go_function cytochrome-c oxidase activity|GO:0004129||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  product cytochrome c oxidase-related  note cytochrome c oxidase-related; FUNCTIONS IN: cytochrome-c oxidase activity; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase, subunit VIa (InterPro:IPR001349); Has 138 Blast hits to 138 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT4G37830.1p  transcript_id AT4G37830.1  protein_id AT4G37830.1p  transcript_id AT4G37830.1  
At4g37840	chr4:017791924	0.0	C/17791924-17792198,17791701-17791851,17791373-17791627,17791133-17791288,17790943-17791041,17790742-17790872,17790583-17790664,17790147-17790479	AT4G37840.1  CDS  gene_syn HEXOKINASE-LIKE 3, HKL3, T28I19.120, T28I19_120  gene HKL3  function Encodes a putative hexokinase.  go_component mitochondrion|GO:0005739|18481082|IDA  go_process response to hypoxia|GO:0001666|17234224|IEP  go_process response to osmotic stress|GO:0006970|17234224|IEP  go_process response to DNA damage stimulus|GO:0006974|17234224|IEP  go_process response to oxidative stress|GO:0006979|17234224|IEP  go_process response to heat|GO:0009408|17234224|IEP  go_process response to cold|GO:0009409|17234224|IEP  go_process response to water deprivation|GO:0009414|17234224|IEP  go_process response to salt stress|GO:0009651|17234224|IEP  go_process response to UV-B|GO:0010224|17234224|IEP  go_function glucokinase activity|GO:0004340|18481082|IDA  go_function hexokinase activity|GO:0004396|17234224|ISS  go_function hexokinase activity|GO:0004396||ISS  go_function ATP binding|GO:0005524||ISS  go_function fructokinase activity|GO:0008865|18481082|IDA  product HKL3 (HEXOKINASE-LIKE 3); ATP binding / fructokinase/ glucokinase/ hexokinase  note HEXOKINASE-LIKE 3 (HKL3); FUNCTIONS IN: hexokinase activity, fructokinase activity, glucokinase activity, ATP binding; INVOLVED IN: in 9 processes; LOCATED IN: mitochondrion; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Hexokinase (InterPro:IPR001312); BEST Arabidopsis thaliana protein match is: HXK1 (HEXOKINASE 1); ATP binding / fructokinase/ glucokinase/ hexokinase (TAIR:AT4G29130.1); Has 1681 Blast hits to 1446 proteins in 225 species: Archae - 0; Bacteria - 31; Metazoa - 971; Fungi - 370; Plants - 201; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT4G37840.1p  transcript_id AT4G37840.1  protein_id AT4G37840.1p  transcript_id AT4G37840.1  
At4g37850	chr4:017797612	0.0	C/17797612-17797647,17797001-17797504,17796531-17796902,17796362-17796436	AT4G37850.1  CDS  gene_syn T28I19.130, T28I19_130  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT2G22750.2); Has 1635 Blast hits to 1635 proteins in 140 species: Archae - 0; Bacteria - 2; Metazoa - 58; Fungi - 36; Plants - 1532; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT4G37850.1p  transcript_id AT4G37850.1  protein_id AT4G37850.1p  transcript_id AT4G37850.1  
At4g37860	chr4:017801774	0.0	C/17801774-17801907,17801496-17801658,17800841-17801445,17800589-17800751	AT4G37860.1  CDS  gene_syn T28I19.140, T28I19_140  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Chromatin SPT2 (InterPro:IPR013256); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G22720.3); Has 543 Blast hits to 488 proteins in 97 species: Archae - 0; Bacteria - 20; Metazoa - 186; Fungi - 63; Plants - 52; Viruses - 1; Other Eukaryotes - 221 (source: NCBI BLink).  protein_id AT4G37860.1p  transcript_id AT4G37860.1  protein_id AT4G37860.1p  transcript_id AT4G37860.1  
At4g37870	chr4:017806055	0.0	C/17806055-17806332,17805489-17805685,17805242-17805395,17805064-17805148,17804872-17804972,17804484-17804782,17804132-17804305,17803983-17804048,17803724-17803902,17803471-17803640,17803202-17803370,17802974-17803117	AT4G37870.1  CDS  gene_syn PCK1, PEPCK, PHOSPHOENOLPYRUVATE CARBOXYKINASE, PHOSPHOENOLPYRUVATE CARBOXYKINASE 1, T28I19.150, T28I19_150  gene PCK1  function Encodes a putative phosphoenolpyruvate carboxykinase (ATP-dependent).  go_component nucleolus|GO:0005730|15496452|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function phosphoenolpyruvate carboxykinase activity|GO:0004611||IEA  go_function phosphoenolpyruvate carboxykinase (ATP) activity|GO:0004612||IEA  go_function ATP binding|GO:0005524||IEA  go_function purine nucleotide binding|GO:0017076||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process gluconeogenesis|GO:0006094||ISS  go_function phosphoenolpyruvate carboxykinase (ATP) activity|GO:0004612||ISS  go_function ATP binding|GO:0005524||ISS  product PCK1 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 1); ATP binding / phosphoenolpyruvate carboxykinase (ATP)/ phosphoenolpyruvate carboxykinase/ purine nucleotide binding  note PHOSPHOENOLPYRUVATE CARBOXYKINASE 1 (PCK1); FUNCTIONS IN: phosphoenolpyruvate carboxykinase activity, purine nucleotide binding, phosphoenolpyruvate carboxykinase (ATP) activity, ATP binding; INVOLVED IN: response to cadmium ion, gluconeogenesis; LOCATED IN: cytosol, nucleolus, nucleus, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoenolpyruvate carboxykinase, N-terminal (InterPro:IPR008210), Phosphoenolpyruvate carboxykinase (ATP), conserved site (InterPro:IPR015994), Phosphoenolpyruvate carboxykinase, ATP-utilising (InterPro:IPR001272), Phosphoenolpyruvate carboxykinase, C-terminal (InterPro:IPR013035); BEST Arabidopsis thaliana protein match is: PCK2 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 2); ATP binding / phosphoenolpyruvate carboxykinase (ATP)/ phosphoenolpyruvate carboxykinase/ purine nucleotide binding (TAIR:AT5G65690.1); Has 3174 Blast hits to 3171 proteins in 774 species: Archae - 13; Bacteria - 1427; Metazoa - 2; Fungi - 93; Plants - 82; Viruses - 0; Other Eukaryotes - 1557 (source: NCBI BLink).  protein_id AT4G37870.1p  transcript_id AT4G37870.1  protein_id AT4G37870.1p  transcript_id AT4G37870.1  
At4g37880	chr4:017810183	0.0	W/17810183-17811349	AT4G37880.1  CDS  gene_syn T28I19.160, T28I19_160  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), CT11-RanBPM (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT2G22690.2); Has 631 Blast hits to 627 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 324; Fungi - 158; Plants - 74; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT4G37880.1p  transcript_id AT4G37880.1  protein_id AT4G37880.1p  transcript_id AT4G37880.1  
At4g37890	chr4:017812812	0.0	C/17812812-17815031	AT4G37890.1  CDS  gene_syn EDA40, F20D10.10, F20D10_10, embryo sac development arrest 40  gene EDA40  go_component plasma membrane|GO:0005886|17317660|IDA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process polar nucleus fusion|GO:0010197|15634699|IMP  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product EDA40 (embryo sac development arrest 40); protein binding / ubiquitin-protein ligase/ zinc ion binding  note embryo sac development arrest 40 (EDA40); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: polar nucleus fusion; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G22680.1); Has 665 Blast hits to 590 proteins in 144 species: Archae - 0; Bacteria - 200; Metazoa - 44; Fungi - 83; Plants - 207; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).  protein_id AT4G37890.1p  transcript_id AT4G37890.1  protein_id AT4G37890.1p  transcript_id AT4G37890.1  
At4g37895	chr4:017813545	0.0	W/17813545-17815178	AT4G37895.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT4G37890  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G37895.1  
At4g37890	chr4:017814633	0.0	C/17814633-17815031,17812812-17814548	AT4G37890.2  CDS  gene_syn EDA40, F20D10.10, F20D10_10, embryo sac development arrest 40  gene EDA40  go_component plasma membrane|GO:0005886|17317660|IDA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process polar nucleus fusion|GO:0010197|15634699|IMP  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product EDA40 (embryo sac development arrest 40); protein binding / ubiquitin-protein ligase/ zinc ion binding  note embryo sac development arrest 40 (EDA40); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: polar nucleus fusion; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G22680.1); Has 1654 Blast hits to 775 proteins in 179 species: Archae - 0; Bacteria - 271; Metazoa - 201; Fungi - 161; Plants - 214; Viruses - 0; Other Eukaryotes - 807 (source: NCBI BLink).  protein_id AT4G37890.2p  transcript_id AT4G37890.2  protein_id AT4G37890.2p  transcript_id AT4G37890.2  
At4g37900	chr4:017824282	0.0	C/17824282-17824445,17824053-17824173,17823723-17823971,17822320-17823639,17821737-17822246	AT4G37900.1  CDS  gene_syn F20D10.20, F20D10_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product glycine-rich protein  note glycine-rich protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1399 (InterPro:IPR009836); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G22660.2); Has 22030 Blast hits to 5537 proteins in 544 species: Archae - 4; Bacteria - 11499; Metazoa - 5218; Fungi - 608; Plants - 2972; Viruses - 230; Other Eukaryotes - 1499 (source: NCBI BLink).  protein_id AT4G37900.1p  transcript_id AT4G37900.1  protein_id AT4G37900.1p  transcript_id AT4G37900.1  
At4g37910	chr4:017828025	0.0	C/17828025-17828099,17827651-17827712,17827473-17827551,17826810-17827376,17826100-17826720,17825368-17826012	AT4G37910.1  CDS  gene_syn F20D10.30, F20D10_30, mitochondrial heat shock protein 70-1, mtHsc70-1  gene mtHsc70-1  go_component cell wall|GO:0005618|16287169|IDA  go_component mitochondrion|GO:0005739|15276431|IDA  go_component mitochondrion|GO:0005739|17137349|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial matrix|GO:0005759|11402207|TAS  go_process protein folding|GO:0006457|11402207|TAS  go_process response to heat|GO:0009408|11402207|IEP  product mtHsc70-1 (mitochondrial heat shock protein 70-1); ATP binding  note mitochondrial heat shock protein 70-1 (mtHsc70-1); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to cadmium ion, response to salt stress, response to heat; LOCATED IN: mitochondrion, cell wall, plasma membrane, mitochondrial matrix; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Chaperone DnaK (InterPro:IPR012725), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: MTHSC70-2 (MITOCHONDRIAL HSP70 2); ATP binding (TAIR:AT5G09590.1); Has 25409 Blast hits to 25308 proteins in 3114 species: Archae - 101; Bacteria - 9998; Metazoa - 2940; Fungi - 1134; Plants - 697; Viruses - 241; Other Eukaryotes - 10298 (source: NCBI BLink).  protein_id AT4G37910.1p  transcript_id AT4G37910.1  protein_id AT4G37910.1p  transcript_id AT4G37910.1  
At4g37920	chr4:017830134	0.0	C/17830134-17830317,17829692-17829957,17829435-17829600,17829115-17829359,17828851-17829038,17828538-17828772	AT4G37920.1  CDS  gene_syn F20D10.40, F20D10_40  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G36320.1); Has 78 Blast hits to 75 proteins in 27 species: Archae - 2; Bacteria - 8; Metazoa - 7; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT4G37920.1p  transcript_id AT4G37920.1  protein_id AT4G37920.1p  transcript_id AT4G37920.1  
At4g37925	chr4:017831033	0.0	C/17831033-17831485,17830748-17830948	AT4G37925.1  CDS  gene_syn NDH-M, subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex  gene NDH-M  function Encodes subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15608332|TAS  go_component NAD(P)H dehydrogenase complex (plastoquinone)|GO:0010598|15608332|TAS  go_process NADH dehydrogenase complex (plastoquinone) assembly|GO:0010258|15608332|IMP  product NDH-M (subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex)  note subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex (NDH-M); INVOLVED IN: NADH dehydrogenase complex (plastoquinone) assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2485 (InterPro:IPR018922); Has 274 Blast hits to 274 proteins in 61 species: Archae - 0; Bacteria - 128; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).  protein_id AT4G37925.1p  transcript_id AT4G37925.1  protein_id AT4G37925.1p  transcript_id AT4G37925.1  
At4g37930	chr4:017834656	0.0	C/17834656-17834742,17834499-17834549,17834241-17834327,17834024-17834145,17833843-17833919,17833639-17833763,17833462-17833554,17833282-17833374,17833006-17833203,17832814-17832918,17832667-17832732,17832507-17832584,17832315-17832426,17832123-17832233,17831891-17832039	AT4G37930.1  CDS  gene_syn F20D10.50, F20D10_50, SERINE HYDROXYMETHYLTRANSFERASE 1, SERINE TRANSHYDROXYMETHYLASE, SERINE TRANSHYDROXYMETHYLTRANSFERASE, SERINE TRANSHYDROXYMETHYLTRANSFERASE 1, SHM1, SHMT1, STM  gene SHM1  function Encodes a protein with mitochondrial serine hydroxymethyltransferase activity, which functions in the photorespiratory pathway, catalyzes the conversion of serine and tetrahydrofolate to glycine and 5,10-methylene tetrahydrofolate. Involved in controlling cell damage caused by abiotic stress, such as high light and salt and the hypersensitive defense response of plants.  go_component nucleus|GO:0005634|14617066|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial matrix|GO:0005759|10806255|ISS  go_component stromule|GO:0010319|16923014|IDA  go_process glycine metabolic process|GO:0006544||ISS  go_process L-serine metabolic process|GO:0006563||ISS  go_process oxygen and reactive oxygen species metabolic process|GO:0006800|15659103|TAS  go_process response to cold|GO:0009409|16923014|IEP  go_process plant-type hypersensitive response|GO:0009626|15659103|TAS  go_process photorespiration|GO:0009853|17400706|IMP  go_process glycine decarboxylation via glycine cleavage system|GO:0019464||IMP  go_function glycine hydroxymethyltransferase activity|GO:0004372|9232907|TAS  go_function glycine hydroxymethyltransferase activity|GO:0004372||ISS  go_function poly(U) binding|GO:0008266|17511964|IDA  product SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1); glycine hydroxymethyltransferase/ poly(U) binding  note SERINE TRANSHYDROXYMETHYLTRANSFERASE 1 (SHM1); FUNCTIONS IN: poly(U) binding, glycine hydroxymethyltransferase activity; INVOLVED IN: in 8 processes; LOCATED IN: in 9 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Glycine hydroxymethyltransferase (InterPro:IPR001085); BEST Arabidopsis thaliana protein match is: SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding (TAIR:AT5G26780.1); Has 8310 Blast hits to 8292 proteins in 1625 species: Archae - 141; Bacteria - 3484; Metazoa - 295; Fungi - 187; Plants - 216; Viruses - 6; Other Eukaryotes - 3981 (source: NCBI BLink).  protein_id AT4G37930.1p  transcript_id AT4G37930.1  protein_id AT4G37930.1p  transcript_id AT4G37930.1  
At4g37940	chr4:017838440	0.0	C/17838440-17838621,17836683-17836761,17836476-17836537,17836252-17836351,17836095-17836136,17835909-17835992,17835695-17835832	AT4G37940.1  CDS  gene_syn AGL21, F20D10.60, F20D10_60  gene AGL21  function encodes a MADS box protein, highly expressed in the root.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634|16581911|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL21; transcription factor  note AGL21; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, C globular stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGL17 (agamous-like 17); transcription factor (TAIR:AT2G22630.1); Has 5227 Blast hits to 5221 proteins in 694 species: Archae - 0; Bacteria - 4; Metazoa - 565; Fungi - 208; Plants - 4368; Viruses - 2; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT4G37940.1p  transcript_id AT4G37940.1  protein_id AT4G37940.1p  transcript_id AT4G37940.1  
At4g37950	chr4:017844792	0.0	W/17844792-17844892,17845207-17845285,17845409-17845524,17845616-17845666,17845794-17845907,17846019-17846138,17846216-17846363,17846695-17846865,17847087-17847233,17847339-17847445,17847557-17847650,17847939-17848080,17848317-17848482,17848577-17848693,17848793-17849156	AT4G37950.1  CDS  gene_syn F20D10.70, F20D10_70  go_process biological_process|GO:0008150||ND  go_function lyase activity|GO:0016829||ISS  product lyase  note lyase; FUNCTIONS IN: lyase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell, root; CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325), Carbohydrate-binding-like fold (InterPro:IPR013784), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: lyase (TAIR:AT2G22620.1); Has 157 Blast hits to 146 proteins in 44 species: Archae - 0; Bacteria - 25; Metazoa - 0; Fungi - 55; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G37950.1p  transcript_id AT4G37950.1  protein_id AT4G37950.1p  transcript_id AT4G37950.1  
At4g37970	chr4:017849672	0.0	W/17849672-17849772,17849867-17849980,17850899-17851188,17851393-17851616,17851692-17851845,17851937-17852145	AT4G37970.1  CDS  gene_syn ATCAD6, CAD6, CINNAMYL ALCOHOL DEHYDROGENASE 6, F20D10.90, F20D10_90  gene CAD6  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  product CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6); binding / catalytic/ oxidoreductase/ zinc ion binding  note CINNAMYL ALCOHOL DEHYDROGENASE 6 (CAD6); FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: ELI3-2 (ELICITOR-ACTIVATED GENE 3-2); aryl-alcohol dehydrogenase/ mannitol dehydrogenase (TAIR:AT4G37990.1); Has 22264 Blast hits to 22252 proteins in 1793 species: Archae - 377; Bacteria - 12614; Metazoa - 1134; Fungi - 1791; Plants - 1846; Viruses - 3; Other Eukaryotes - 4499 (source: NCBI BLink).  protein_id AT4G37970.1p  transcript_id AT4G37970.1  protein_id AT4G37970.1p  transcript_id AT4G37970.1  
At4g37980	chr4:017852670	0.0	W/17852670-17852755,17852858-17852971,17853218-17853885,17854097-17854302	AT4G37980.1  CDS  gene_syn ATCAD7, CAD7, CINNAMYL-ALCOHOL DEHYDROGENASE 7, ELI3, ELI3-1, ELICITOR-ACTIVATED GENE 3, ELICITOR-ACTIVATED GENE 3-1, F20D10.100, F20D10_100  gene ELI3-1  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process response to bacterium|GO:0009617|1464303|IEP  go_process plant-type hypersensitive response|GO:0009626|1464303|IGI  product ELI3-1 (ELICITOR-ACTIVATED GENE 3-1); binding / catalytic/ oxidoreductase/ zinc ion binding  note ELICITOR-ACTIVATED GENE 3-1 (ELI3-1); FUNCTIONS IN: oxidoreductase activity, binding, zinc ion binding, catalytic activity; INVOLVED IN: response to bacterium, plant-type hypersensitive response; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: ELI3-2 (ELICITOR-ACTIVATED GENE 3-2); aryl-alcohol dehydrogenase/ mannitol dehydrogenase (TAIR:AT4G37990.1); Has 24573 Blast hits to 24551 proteins in 1866 species: Archae - 389; Bacteria - 13994; Metazoa - 1153; Fungi - 1912; Plants - 2273; Viruses - 3; Other Eukaryotes - 4849 (source: NCBI BLink).  protein_id AT4G37980.1p  transcript_id AT4G37980.1  protein_id AT4G37980.1p  transcript_id AT4G37980.1  
At4g37980	chr4:017852670	0.0	W/17852670-17852755,17852858-17852971,17853218-17853914	AT4G37980.2  CDS  gene_syn ATCAD7, CAD7, CINNAMYL-ALCOHOL DEHYDROGENASE 7, ELI3, ELI3-1, ELICITOR-ACTIVATED GENE 3, ELICITOR-ACTIVATED GENE 3-1, F20D10.100, F20D10_100  gene ELI3-1  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process response to bacterium|GO:0009617|1464303|IEP  go_process plant-type hypersensitive response|GO:0009626|1464303|IGI  product ELI3-1 (ELICITOR-ACTIVATED GENE 3-1); binding / catalytic/ oxidoreductase/ zinc ion binding  note ELICITOR-ACTIVATED GENE 3-1 (ELI3-1); FUNCTIONS IN: oxidoreductase activity, binding, zinc ion binding, catalytic activity; INVOLVED IN: response to bacterium, plant-type hypersensitive response; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: ELI3-2 (ELICITOR-ACTIVATED GENE 3-2); aryl-alcohol dehydrogenase/ mannitol dehydrogenase (TAIR:AT4G37990.1); Has 24066 Blast hits to 24046 proteins in 1866 species: Archae - 386; Bacteria - 13802; Metazoa - 1151; Fungi - 1866; Plants - 2250; Viruses - 3; Other Eukaryotes - 4608 (source: NCBI BLink).  protein_id AT4G37980.2p  transcript_id AT4G37980.2  protein_id AT4G37980.2p  transcript_id AT4G37980.2  
At4g37990	chr4:017855964	0.0	W/17855964-17856049,17856129-17856242,17856385-17857052,17857177-17857388	AT4G37990.1  CDS  gene_syn ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, ATCAD8, CAD-B2, CI0009, CINNAMYL-ALCOHOL DEHYDROGENASE, CINNAMYL-ALCOHOL DEHYDROGENASE B2, ELI3, ELI3-2, ELICITOR-ACTIVATED GENE 3, ELICITOR-ACTIVATED GENE 3-2, F20D10.110, F20D10_110  gene ELI3-2  function Encodes an aromatic alcohol:NADP+ oxidoreductase whose mRNA levels are increased in response to treatment with a variety of phytopathogenic bacteria. Though similar to mannitol dehydrogenases, this enzyme does not have mannitol dehydrogenase activity.  go_component cellular_component|GO:0005575||ND  go_process response to bacterium|GO:0009617|1464303|IEP  go_process plant-type hypersensitive response|GO:0009626|1464303|IGI  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function aryl-alcohol dehydrogenase activity|GO:0018456||IDA  go_function mannitol dehydrogenase activity|GO:0046029||IDA  product ELI3-2 (ELICITOR-ACTIVATED GENE 3-2); aryl-alcohol dehydrogenase/ mannitol dehydrogenase  note ELICITOR-ACTIVATED GENE 3-2 (ELI3-2); FUNCTIONS IN: mannitol dehydrogenase activity, aryl-alcohol dehydrogenase activity; INVOLVED IN: response to cyclopentenone, response to bacterium, plant-type hypersensitive response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: ELI3-1 (ELICITOR-ACTIVATED GENE 3-1); binding / catalytic/ oxidoreductase/ zinc ion binding (TAIR:AT4G37980.1); Has 25179 Blast hits to 25162 proteins in 1886 species: Archae - 400; Bacteria - 14294; Metazoa - 1177; Fungi - 2006; Plants - 2296; Viruses - 3; Other Eukaryotes - 5003 (source: NCBI BLink).  protein_id AT4G37990.1p  transcript_id AT4G37990.1  protein_id AT4G37990.1p  transcript_id AT4G37990.1  
At4g38000	chr4:017858436	0.0	W/17858436-17859176	AT4G38000.1  CDS  gene_syn F20D10.120, F20D10_120  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product Dof-type zinc finger domain-containing protein  note Dof-type zinc finger domain-containing protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: ADOF1; DNA binding / transcription factor (TAIR:AT1G51700.1); Has 617 Blast hits to 613 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 612; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G38000.1p  transcript_id AT4G38000.1  protein_id AT4G38000.1p  transcript_id AT4G38000.1  
At4g38010	chr4:017859582	0.0	C/17859582-17861261	AT4G38010.1  CDS  gene_syn F20D10.130, F20D10_130  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G08070.1); Has 13274 Blast hits to 4852 proteins in 111 species: Archae - 0; Bacteria - 2; Metazoa - 28; Fungi - 41; Plants - 12995; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink).  protein_id AT4G38010.1p  transcript_id AT4G38010.1  protein_id AT4G38010.1p  transcript_id AT4G38010.1  
At4g38020	chr4:017861568	0.0	W/17861568-17861881,17862026-17862326,17862468-17862518,17862618-17863010	AT4G38020.1  CDS  gene_syn F20D10.140, F20D10_140  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_function RNA methyltransferase activity|GO:0008173||IEA  go_component cellular_component|GO:0005575||ND  go_process RNA processing|GO:0006396||ISS  go_function RNA binding|GO:0003723||ISS  go_function RNA methyltransferase activity|GO:0008173||ISS  product tRNA/rRNA methyltransferase (SpoU) family protein  note tRNA/rRNA methyltransferase (SpoU) family protein; FUNCTIONS IN: RNA binding, RNA methyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537); Has 7116 Blast hits to 7116 proteins in 1450 species: Archae - 3; Bacteria - 4784; Metazoa - 124; Fungi - 58; Plants - 45; Viruses - 0; Other Eukaryotes - 2102 (source: NCBI BLink).  protein_id AT4G38020.1p  transcript_id AT4G38020.1  protein_id AT4G38020.1p  transcript_id AT4G38020.1  
At4g38030	chr4:017866645	0.0	C/17866645-17866730,17866163-17866235,17865954-17866069,17865788-17865841,17865389-17865616,17865148-17865295,17864879-17865049,17864618-17864779,17864426-17864532,17864266-17864344,17863863-17864161,17863654-17863770,17863206-17863569	AT4G38030.1  CDS  gene_syn F20D10.150, F20D10_150  go_component endomembrane system|GO:0012505||IEA  go_function lyase activity|GO:0016829||ISS  product lyase  note lyase; FUNCTIONS IN: lyase activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325), Carbohydrate-binding-like fold (InterPro:IPR013784), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: lyase (TAIR:AT2G22620.1); Has 169 Blast hits to 161 proteins in 48 species: Archae - 0; Bacteria - 28; Metazoa - 0; Fungi - 67; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G38030.1p  transcript_id AT4G38030.1  protein_id AT4G38030.1p  transcript_id AT4G38030.1  
At4g38040	chr4:017867501	0.0	W/17867501-17867998,17868083-17868369,17868469-17868701,17868804-17868961,17869030-17869131	AT4G38040.1  CDS  gene_syn F20D10.160, F20D10_160  go_component chloroplast|GO:0009507||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product exostosin family protein  note exostosin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: exostosin family protein (TAIR:AT5G11610.1); Has 891 Blast hits to 890 proteins in 89 species: Archae - 0; Bacteria - 10; Metazoa - 291; Fungi - 4; Plants - 500; Viruses - 3; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT4G38040.1p  transcript_id AT4G38040.1  protein_id AT4G38040.1p  transcript_id AT4G38040.1  
At4g38050	chr4:017871906	0.0	C/17871906-17872461,17871679-17871776,17871431-17871601,17871246-17871346,17871016-17871151,17870882-17870932,17870505-17870792,17870183-17870417,17869824-17870104,17869529-17869741	AT4G38050.1  CDS  gene_syn F20D10.170, F20D10_170  go_component plasma membrane|GO:0005886|17317660|IDA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_function transmembrane transporter activity|GO:0022857||ISS  product transmembrane transporter  note transmembrane transporter; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xanthine/uracil permease (InterPro:IPR006042), Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: xanthine/uracil permease family protein (TAIR:AT2G27810.1); Has 5016 Blast hits to 4967 proteins in 936 species: Archae - 39; Bacteria - 3624; Metazoa - 321; Fungi - 102; Plants - 284; Viruses - 1; Other Eukaryotes - 645 (source: NCBI BLink).  protein_id AT4G38050.1p  transcript_id AT4G38050.1  protein_id AT4G38050.1p  transcript_id AT4G38050.1  
At4g38052	chr4:017872740	0.0	C/17872740-17872853	AT4G38052.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G38052.1p  transcript_id AT4G38052.1  protein_id AT4G38052.1p  transcript_id AT4G38052.1  
At4g38060	chr4:017874002	0.0	C/17874002-17874379	AT4G38060.1  CDS  gene_syn F20D10.180, F20D10_180  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65480.1); Has 37 Blast hits to 37 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G38060.1p  transcript_id AT4G38060.1  protein_id AT4G38060.1p  transcript_id AT4G38060.1  
At4g38060	chr4:017874019	0.0	C/17874019-17874379,17873709-17873758	AT4G38060.2  CDS  gene_syn F20D10.180, F20D10_180  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65480.1); Has 38 Blast hits to 38 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G38060.2p  transcript_id AT4G38060.2  protein_id AT4G38060.2p  transcript_id AT4G38060.2  
At4g38070	chr4:017876535	0.0	W/17876535-17879659,17880731-17881240,17881464-17881522,17881637-17882082,17882168-17882569	AT4G38070.1  CDS  gene_syn F20D10.190, F20D10_190  go_process regulation of transcription|GO:0045449||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product bHLH family protein  note bHLH family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11940.1); Has 153600 Blast hits to 64178 proteins in 2103 species: Archae - 1725; Bacteria - 18566; Metazoa - 74411; Fungi - 10663; Plants - 6524; Viruses - 685; Other Eukaryotes - 41026 (source: NCBI BLink).  protein_id AT4G38070.1p  transcript_id AT4G38070.1  protein_id AT4G38070.1p  transcript_id AT4G38070.1  
At4g38080	chr4:017883012	0.0	W/17883012-17883398	AT4G38080.1  CDS  gene_syn F20D10.200, F20D10_200  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, hypocotyl, root; EXPRESSED DURING: C globular stage; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT2G22510.1); Has 4420 Blast hits to 2465 proteins in 351 species: Archae - 22; Bacteria - 471; Metazoa - 1079; Fungi - 248; Plants - 1263; Viruses - 478; Other Eukaryotes - 859 (source: NCBI BLink).  protein_id AT4G38080.1p  transcript_id AT4G38080.1  protein_id AT4G38080.1p  transcript_id AT4G38080.1  
At4g38090	chr4:017884317	0.0	C/17884317-17884702,17884036-17884228	AT4G38090.3  CDS  gene_syn F20D10.210, F20D10_210  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0029, N-terminal (InterPro:IPR001498); Has 151 Blast hits to 151 proteins in 82 species: Archae - 5; Bacteria - 144; Metazoa - 0; Fungi - 2; Plants - 0; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G38090.3p  transcript_id AT4G38090.3  protein_id AT4G38090.3p  transcript_id AT4G38090.3  
At4g38090	chr4:017884317	0.0	C/17884317-17884702,17884123-17884228,17883975-17884052	AT4G38090.2  CDS  gene_syn F20D10.210, F20D10_210  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0029, N-terminal (InterPro:IPR001498); Has 1854 Blast hits to 1854 proteins in 915 species: Archae - 44; Bacteria - 1618; Metazoa - 34; Fungi - 27; Plants - 22; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).  protein_id AT4G38090.2p  transcript_id AT4G38090.2  protein_id AT4G38090.2p  transcript_id AT4G38090.2  
At4g38090	chr4:017884317	0.0	C/17884317-17884702,17884123-17884228,17883999-17884052,17883757-17883915	AT4G38090.1  CDS  gene_syn F20D10.210, F20D10_210  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0029, N-terminal (InterPro:IPR001498); Has 1854 Blast hits to 1854 proteins in 915 species: Archae - 44; Bacteria - 1618; Metazoa - 34; Fungi - 27; Plants - 22; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).  protein_id AT4G38090.1p  transcript_id AT4G38090.1  protein_id AT4G38090.1p  transcript_id AT4G38090.1  
At4g38092	chr4:017885340	0.0	W/17885340-17885351,17885660-17885840,17885925-17886033,17886330-17886414,17886683-17886688	AT4G38092.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04490.1); Has 73 Blast hits to 73 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G38092.1p  transcript_id AT4G38092.1  protein_id AT4G38092.1p  transcript_id AT4G38092.1  
At4g38100	chr4:017888036	0.0	C/17888036-17888177,17887599-17887789,17887333-17887437,17887187-17887258,17887033-17887104	AT4G38100.1  CDS  gene_syn F20D10.220, F20D10_220  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  product unknown protein  note unknown protein; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01150.1); Has 208 Blast hits to 208 proteins in 42 species: Archae - 0; Bacteria - 79; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G38100.1p  transcript_id AT4G38100.1  protein_id AT4G38100.1p  transcript_id AT4G38100.1  
At4g38120	chr4:017895797	0.0	C/17895797-17896060,17895544-17895722,17895211-17895469,17894988-17895132,17894406-17894755,17894233-17894312,17894100-17894151,17893769-17893922,17893583-17893670,17893187-17893289,17892406-17892496,17892217-17892314,17891736-17891918,17891277-17891513,17891065-17891160,17890881-17890975,17890723-17890786,17890548-17890626,17890402-17890475,17889901-17890113,17889583-17889656,17889397-17889503,17889135-17889253,17888988-17889065,17888668-17888883	AT4G38120.1  CDS  gene_syn F20D10.240, F20D10_240  go_component plasma membrane|GO:0005886|17151019|IDA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 151 Blast hits to 124 proteins in 50 species: Archae - 0; Bacteria - 2; Metazoa - 104; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT4G38120.1p  transcript_id AT4G38120.1  protein_id AT4G38120.1p  transcript_id AT4G38120.1  
At4g38120	chr4:017895797	0.0	C/17895797-17896060,17895544-17895722,17895211-17895469,17895065-17895132,17894890-17894959,17894406-17894771,17894233-17894312,17894100-17894151,17893790-17893849	AT4G38120.2  CDS  gene_syn F20D10.240, F20D10_240  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 25 Blast hits to 25 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G38120.2p  transcript_id AT4G38120.2  protein_id AT4G38120.2p  transcript_id AT4G38120.2  
At4g38130	chr4:017898530	0.0	C/17898530-17899057,17898005-17898445,17897644-17897874,17897318-17897388,17897172-17897229,17896663-17896743	AT4G38130.2  CDS  gene_syn ARABIDOPSIS HISTONE DEACETYLASE 1, ATHD1, ATRPD3A, F20D10.250, F20D10_250, HD1, HDA1, HDA19, HISTONE DEACETYLASE, HISTONE DEACETYLASE 1, HISTONE DEACETYLASE 19, HISTONE DEACETYLASE19, RPD3A  gene HD1  function Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7. Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation.  go_component nucleus|GO:0005634|15749761|IDA  go_component nucleus|GO:0005634|16763149|IDA  go_component nucleus|GO:0005634||ISS  go_process multicellular organismal development|GO:0007275|11134508|IMP  go_process DNA mediated transformation|GO:0009294|17827277|IMP  go_process jasmonic acid and ethylene-dependent systemic resistance|GO:0009861|15749761|IMP  go_process negative regulation of transcription|GO:0016481|15994908|IDA  go_process histone acetylation|GO:0016573|17085686|IDA  go_process histone deacetylation|GO:0016575||ISS  go_function histone deacetylase activity|GO:0004407|11134508|IMP  go_function histone deacetylase activity|GO:0004407|11134508|ISS  go_function histone deacetylase activity|GO:0004407|12466527|ISS  go_function histone deacetylase activity|GO:0004407|16699543|IDA  go_function histone deacetylase activity|GO:0004407||ISS  go_function protein binding|GO:0005515|16429262|IPI  go_function basal transcription repressor activity|GO:0017163|16429262|TAS  product HD1 (HISTONE DEACETYLASE 1); basal transcription repressor/ histone deacetylase/ protein binding  note HISTONE DEACETYLASE 1 (HD1); FUNCTIONS IN: histone deacetylase activity, protein binding, basal transcription repressor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: HDA6 (HISTONE DEACETYLASE 6); histone deacetylase (TAIR:AT5G63110.1); Has 6631 Blast hits to 6506 proteins in 847 species: Archae - 124; Bacteria - 1993; Metazoa - 1158; Fungi - 371; Plants - 285; Viruses - 0; Other Eukaryotes - 2700 (source: NCBI BLink).  protein_id AT4G38130.2p  transcript_id AT4G38130.2  protein_id AT4G38130.2p  transcript_id AT4G38130.2  
At4g38130	chr4:017898530	0.0	C/17898530-17899057,17898005-17898445,17897644-17897874,17897318-17897388,17897172-17897229,17896672-17896743,17896493-17896597	AT4G38130.1  CDS  gene_syn ARABIDOPSIS HISTONE DEACETYLASE 1, ATHD1, ATRPD3A, F20D10.250, F20D10_250, HD1, HDA1, HDA19, HISTONE DEACETYLASE, HISTONE DEACETYLASE 1, HISTONE DEACETYLASE 19, HISTONE DEACETYLASE19, RPD3A  gene HD1  function Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7. Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation.  go_component nucleus|GO:0005634|15749761|IDA  go_component nucleus|GO:0005634|16763149|IDA  go_component nucleus|GO:0005634||ISS  go_process multicellular organismal development|GO:0007275|11134508|IMP  go_process DNA mediated transformation|GO:0009294|17827277|IMP  go_process jasmonic acid and ethylene-dependent systemic resistance|GO:0009861|15749761|IMP  go_process negative regulation of transcription|GO:0016481|15994908|IDA  go_process histone acetylation|GO:0016573|17085686|IDA  go_process histone deacetylation|GO:0016575||ISS  go_function histone deacetylase activity|GO:0004407|11134508|IMP  go_function histone deacetylase activity|GO:0004407|11134508|ISS  go_function histone deacetylase activity|GO:0004407|12466527|ISS  go_function histone deacetylase activity|GO:0004407|16699543|IDA  go_function histone deacetylase activity|GO:0004407||ISS  go_function protein binding|GO:0005515|16429262|IPI  go_function basal transcription repressor activity|GO:0017163|16429262|TAS  product HD1 (HISTONE DEACETYLASE 1); basal transcription repressor/ histone deacetylase/ protein binding  note HISTONE DEACETYLASE 1 (HD1); FUNCTIONS IN: histone deacetylase activity, protein binding, basal transcription repressor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: HDA6 (HISTONE DEACETYLASE 6); histone deacetylase (TAIR:AT5G63110.1); Has 6633 Blast hits to 6508 proteins in 847 species: Archae - 124; Bacteria - 1993; Metazoa - 1161; Fungi - 371; Plants - 285; Viruses - 0; Other Eukaryotes - 2699 (source: NCBI BLink).  protein_id AT4G38130.1p  transcript_id AT4G38130.1  protein_id AT4G38130.1p  transcript_id AT4G38130.1  
At4g38140	chr4:017899868	0.0	C/17899868-17900305	AT4G38140.1  CDS  gene_syn F20D10.260, F20D10_260  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: anchored to membrane; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: MEE16 (maternal effect embryo arrest 16); protein binding / zinc ion binding (TAIR:AT2G18650.1); Has 4965 Blast hits to 4953 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 1611; Fungi - 396; Plants - 2342; Viruses - 8; Other Eukaryotes - 608 (source: NCBI BLink).  protein_id AT4G38140.1p  transcript_id AT4G38140.1  protein_id AT4G38140.1p  transcript_id AT4G38140.1  
At4g38150	chr4:017901211	0.0	C/17901211-17902119	AT4G38150.1  CDS  gene_syn F20D10.270, F20D10_270  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: nucleobase:cation symporter (TAIR:AT5G03560.2); Has 16235 Blast hits to 3636 proteins in 110 species: Archae - 4; Bacteria - 4; Metazoa - 47; Fungi - 110; Plants - 15803; Viruses - 0; Other Eukaryotes - 267 (source: NCBI BLink).  protein_id AT4G38150.1p  transcript_id AT4G38150.1  protein_id AT4G38150.1p  transcript_id AT4G38150.1  
At4g38150	chr4:017901211	0.0	C/17901211-17902119	AT4G38150.2  CDS  gene_syn F20D10.270, F20D10_270  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: nucleobase:cation symporter (TAIR:AT5G03560.2); Has 16235 Blast hits to 3636 proteins in 110 species: Archae - 4; Bacteria - 4; Metazoa - 47; Fungi - 110; Plants - 15803; Viruses - 0; Other Eukaryotes - 267 (source: NCBI BLink).  protein_id AT4G38150.2p  transcript_id AT4G38150.2  protein_id AT4G38150.2p  transcript_id AT4G38150.2  
At4g38160	chr4:017902412	0.0	W/17902412-17903395,17903677-17903784	AT4G38160.2  CDS  gene_syn F20D10.280, F20D10_280, pde191, pigment defective 191  gene pde191  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pde191 (pigment defective 191)  note pigment defective 191 (pde191); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: mitochondrial transcription termination factor family protein / mTERF family protein (TAIR:AT4G02990.1); Has 767 Blast hits to 459 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 0; Plants - 624; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT4G38160.2p  transcript_id AT4G38160.2  protein_id AT4G38160.2p  transcript_id AT4G38160.2  
At4g38160	chr4:017902412	0.0	W/17902412-17903413	AT4G38160.1  CDS  gene_syn F20D10.280, F20D10_280, pde191, pigment defective 191  gene pde191  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pde191 (pigment defective 191)  note pigment defective 191 (pde191); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: mitochondrial transcription termination factor family protein / mTERF family protein (TAIR:AT4G02990.1); Has 770 Blast hits to 459 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 0; Plants - 627; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT4G38160.1p  transcript_id AT4G38160.1  protein_id AT4G38160.1p  transcript_id AT4G38160.1  
At4g38170	chr4:017904613	0.0	W/17904613-17904628,17904737-17906190,17906272-17906439	AT4G38170.1  CDS  gene_syn F20D10.290, F20D10_290, FAR1-related sequence 9, FRS9  gene FRS9  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process response to red or far red light|GO:0009639||ISS  product FRS9 (FAR1-related sequence 9); zinc ion binding  note FAR1-related sequence 9 (FRS9); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PMZ-type (InterPro:IPR006564), MULE transposase, conserved domain (InterPro:IPR018289), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FRS5 (FAR1-related sequence 5); zinc ion binding (TAIR:AT4G38180.1); Has 575 Blast hits to 561 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 571; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G38170.1p  transcript_id AT4G38170.1  protein_id AT4G38170.1p  transcript_id AT4G38170.1  
At4g38180	chr4:017907212	0.0	C/17907212-17909404,17906702-17906875	AT4G38180.1  CDS  gene_syn F20D10.300, F20D10_300, FAR1-related sequence 5, FRS5  gene FRS5  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process response to red or far red light|GO:0009639||ISS  product FRS5 (FAR1-related sequence 5); zinc ion binding  note FAR1-related sequence 5 (FRS5); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FRS3 (FAR1-related sequence 3); zinc ion binding (TAIR:AT2G27110.2); Has 1009 Blast hits to 905 proteins in 33 species: Archae - 2; Bacteria - 0; Metazoa - 1; Fungi - 125; Plants - 879; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G38180.1p  transcript_id AT4G38180.1  protein_id AT4G38180.1p  transcript_id AT4G38180.1  
At4g38190	chr4:017913226	0.0	C/17913226-17913641,17911515-17913123,17910096-17911406	AT4G38190.1  CDS  gene_syn ATCSLD4, CELLULOSE SYNTHASE LIKE D4, CSLD4, F20D10.310, F20D10_310  gene ATCSLD4  function encodes a gene similar to cellulose synthase  go_component Golgi apparatus|GO:0005794|18768911|IDA  go_process polysaccharide biosynthetic process|GO:0000271||ISS  go_process plant-type cell wall biogenesis|GO:0009832||ISS  go_process pollen germination|GO:0009846|18768911|IMP  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  product ATCSLD4; cellulose synthase/ transferase, transferring glycosyl groups  note ATCSLD4; FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: pollen germination, plant-type cell wall biogenesis, polysaccharide biosynthetic process; LOCATED IN: Golgi apparatus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: CSLD3 (CELLULOSE SYNTHASE-LIKE D3); cellulose synthase/ transferase, transferring glycosyl groups (TAIR:AT3G03050.1); Has 2327 Blast hits to 1919 proteins in 430 species: Archae - 11; Bacteria - 968; Metazoa - 5; Fungi - 7; Plants - 1270; Viruses - 2; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT4G38190.1p  transcript_id AT4G38190.1  protein_id AT4G38190.1p  transcript_id AT4G38190.1  
At4g38200	chr4:017915293	0.0	W/17915293-17916276,17916341-17916687,17916912-17917245,17917614-17918036,17918231-17918523,17918811-17919084,17919359-17919849,17920014-17920335,17920523-17920883,17921034-17921695,17921897-17922502	AT4G38200.1  CDS  gene_syn F20D10.320, F20D10_320  go_component chloroplast|GO:0009507|18431481|IDA  go_process regulation of ARF protein signal transduction|GO:0032012||IEA  go_function ARF guanyl-nucleotide exchange factor activity|GO:0005086||IEA  go_function binding|GO:0005488||IEA  go_function guanyl-nucleotide exchange factor activity|GO:0005085||ISS  product guanine nucleotide exchange family protein  note guanine nucleotide exchange family protein; FUNCTIONS IN: binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity; INVOLVED IN: regulation of ARF protein signal transduction; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904), Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF1981, SEC7 associated (InterPro:IPR015403); BEST Arabidopsis thaliana protein match is: guanine nucleotide exchange family protein (TAIR:AT4G35380.1); Has 2210 Blast hits to 1990 proteins in 176 species: Archae - 0; Bacteria - 24; Metazoa - 1279; Fungi - 405; Plants - 143; Viruses - 0; Other Eukaryotes - 359 (source: NCBI BLink).  protein_id AT4G38200.1p  transcript_id AT4G38200.1  protein_id AT4G38200.1p  transcript_id AT4G38200.1  
At4g38215	chr4:017923332	0.0	W/17923332-17924252	AT4G38215.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT4G38210  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G38215.1  
At4g38210	chr4:017923680	0.0	C/17923680-17923821,17922975-17923603	AT4G38210.1  CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN A20, ATEXP20, ATEXPA20, ATHEXP ALPHA 1.23, EXP20, EXPANSIN 20, F20D10.330, F20D10_330  gene ATEXPA20  function expansin -like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_process syncytium formation|GO:0006949|16942607|IEP  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828||ISS  go_process plant-type cell wall modification during multidimensional cell growth|GO:0009831||ISS  product ATEXPA20 (ARABIDOPSIS THALIANA EXPANSIN A20)  note ARABIDOPSIS THALIANA EXPANSIN A20 (ATEXPA20); INVOLVED IN: syncytium formation, plant-type cell wall modification during multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16) (TAIR:AT3G55500.1); Has 1380 Blast hits to 1379 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 7; Plants - 1361; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT4G38210.1p  transcript_id AT4G38210.1  protein_id AT4G38210.1p  transcript_id AT4G38210.1  
At4g38220	chr4:017925251	0.0	W/17925251-17925812,17925884-17926146,17926234-17926371,17926509-17926742,17926815-17926919	AT4G38220.2  CDS  gene_syn F20D10.340, F20D10_340  go_component vacuole|GO:0005773|15539469|IDA  go_process proteolysis|GO:0006508||IEA  go_process amino acid metabolic process|GO:0006520||IEA  go_function aminoacylase activity|GO:0004046||IEA  go_function metallopeptidase activity|GO:0008237||IEA  go_function hydrolase activity|GO:0016787||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_function aminoacylase activity|GO:0004046||ISS  product aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative  note aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative; FUNCTIONS IN: hydrolase activity, metallopeptidase activity, aminoacylase activity, protein dimerization activity; INVOLVED IN: amino acid metabolic process, proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ArgE/DapE/ACY1/CPG2/YscS, conserved site (InterPro:IPR001261), Peptidase M20 (InterPro:IPR002933), N-acyl-L-amino-acid amidohydrolase (InterPro:IPR010159), Peptidase M20, dimerisation (InterPro:IPR011650); BEST Arabidopsis thaliana protein match is: aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative (TAIR:AT1G44820.1); Has 4312 Blast hits to 4309 proteins in 975 species: Archae - 99; Bacteria - 2604; Metazoa - 360; Fungi - 186; Plants - 40; Viruses - 2; Other Eukaryotes - 1021 (source: NCBI BLink).  protein_id AT4G38220.2p  transcript_id AT4G38220.2  protein_id AT4G38220.2p  transcript_id AT4G38220.2  
At4g38220	chr4:017925251	0.0	W/17925251-17925812,17925884-17926146,17926234-17926371,17926518-17926742,17926815-17926919	AT4G38220.1  CDS  gene_syn F20D10.340, F20D10_340  go_component vacuole|GO:0005773|15539469|IDA  go_process proteolysis|GO:0006508||IEA  go_process amino acid metabolic process|GO:0006520||IEA  go_function aminoacylase activity|GO:0004046||IEA  go_function metallopeptidase activity|GO:0008237||IEA  go_function hydrolase activity|GO:0016787||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_function aminoacylase activity|GO:0004046||ISS  product aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative  note aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative; FUNCTIONS IN: metallopeptidase activity, hydrolase activity, protein dimerization activity, aminoacylase activity; INVOLVED IN: amino acid metabolic process, proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ArgE/DapE/ACY1/CPG2/YscS, conserved site (InterPro:IPR001261), Peptidase M20 (InterPro:IPR002933), N-acyl-L-amino-acid amidohydrolase (InterPro:IPR010159), Peptidase M20, dimerisation (InterPro:IPR011650); BEST Arabidopsis thaliana protein match is: aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative (TAIR:AT1G44820.1); Has 4489 Blast hits to 4486 proteins in 994 species: Archae - 99; Bacteria - 2696; Metazoa - 364; Fungi - 187; Plants - 40; Viruses - 2; Other Eukaryotes - 1101 (source: NCBI BLink).  protein_id AT4G38220.1p  transcript_id AT4G38220.1  protein_id AT4G38220.1p  transcript_id AT4G38220.1  
At4g38225	chr4:017927230	0.0	W/17927230-17927446,17927565-17928196,17928285-17928485,17928572-17928607,17928771-17928782	AT4G38225.3  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G38225.3p  transcript_id AT4G38225.3  protein_id AT4G38225.3p  transcript_id AT4G38225.3  
At4g38225	chr4:017927230	0.0	W/17927230-17927446,17927565-17928196,17928285-17928485,17928572-17928613	AT4G38225.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G38225.1p  transcript_id AT4G38225.1  protein_id AT4G38225.1p  transcript_id AT4G38225.1  
At4g38225	chr4:017927230	0.0	W/17927230-17927446,17927565-17928274	AT4G38225.2  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G38225.2p  transcript_id AT4G38225.2  protein_id AT4G38225.2p  transcript_id AT4G38225.2  
At4g38230	chr4:017930384	0.0	C/17930384-17930486,17930164-17930307,17929932-17930084,17929744-17929859,17929502-17929669,17929191-17929415,17928994-17929107	AT4G38230.1  CDS  gene_syn ATCPK26, CPK26, F20D10.350, F20D10_350  gene CPK26  function member of Calcium Dependent Protein Kinase  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  go_function kinase activity|GO:0016301||ISS  product CPK26; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase  note CPK26; FUNCTIONS IN: calmodulin-dependent protein kinase activity, protein kinase activity, kinase activity, calcium ion binding, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6); ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT2G17290.1); Has 71198 Blast hits to 65606 proteins in 2199 species: Archae - 16; Bacteria - 3400; Metazoa - 32138; Fungi - 10463; Plants - 10392; Viruses - 94; Other Eukaryotes - 14695 (source: NCBI BLink).  protein_id AT4G38230.1p  transcript_id AT4G38230.1  protein_id AT4G38230.1p  transcript_id AT4G38230.1  
At4g38240	chr4:017935141	0.0	C/17935141-17935209,17934986-17935036,17934685-17934772,17934482-17934544,17934365-17934399,17934195-17934271,17934072-17934117,17933917-17933979,17933771-17933837,17933636-17933704,17933452-17933521,17933285-17933346,17933093-17933183,17932884-17932977,17932591-17932653,17932477-17932515,17932207-17932377,17932006-17932122	AT4G38240.1  CDS  gene_syn CGL, CGL1, COMPLEX GLYCAN LESS, COMPLEX GLYCAN LESS 1, F20D10.360, F20D10_360, GNTI, N-ACETYLGLUCOSAMINYLTRANSFERASE I  gene CGL1  function Encodes N-acetyl glucosaminyl transferase I, the first enzyme in the pathway of complex glycan biosynthesis.  go_component Golgi apparatus|GO:0005794|10441510|IC  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component Golgi apparatus|GO:0005794|18768906|IDA  go_component Golgi apparatus|GO:0005794|8278542|TAS  go_process protein amino acid glycosylation|GO:0006486|8278542|IMP  go_process N-glycan processing|GO:0006491|18768906|IMP  go_process hyperosmotic response|GO:0006972|18408158|IMP  go_function alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity|GO:0003827|15537386|IDA  go_function protein N-acetylglucosaminyltransferase activity|GO:0016262|8278542|IMP  go_function transferase activity, transferring glycosyl groups|GO:0016757|18768906|IMP  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product CGL1 (COMPLEX GLYCAN LESS 1); alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase/ protein N-acetylglucosaminyltransferase/ transferase, transferring glycosyl groups  note COMPLEX GLYCAN LESS 1 (CGL1); FUNCTIONS IN: protein N-acetylglucosaminyltransferase activity, alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: N-glycan processing, hyperosmotic response, protein amino acid glycosylation; LOCATED IN: Golgi apparatus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 13 (InterPro:IPR004139); Has 381 Blast hits to 380 proteins in 68 species: Archae - 0; Bacteria - 4; Metazoa - 311; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT4G38240.1p  transcript_id AT4G38240.1  protein_id AT4G38240.1p  transcript_id AT4G38240.1  
At4g38240	chr4:017935141	0.0	C/17935141-17935209,17934986-17935036,17934685-17934772,17934482-17934544,17934365-17934399,17934195-17934271,17934072-17934117,17933917-17933979,17933771-17933837,17933636-17933704,17933452-17933521,17933285-17933346,17933093-17933183,17932884-17932977,17932591-17932653,17932477-17932515,17932207-17932377,17932006-17932122	AT4G38240.2  CDS  gene_syn CGL, CGL1, COMPLEX GLYCAN LESS, COMPLEX GLYCAN LESS 1, F20D10.360, F20D10_360, GNTI, N-ACETYLGLUCOSAMINYLTRANSFERASE I  gene CGL1  function Encodes N-acetyl glucosaminyl transferase I, the first enzyme in the pathway of complex glycan biosynthesis.  go_component Golgi apparatus|GO:0005794|10441510|IC  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component Golgi apparatus|GO:0005794|18768906|IDA  go_component Golgi apparatus|GO:0005794|8278542|TAS  go_process protein amino acid glycosylation|GO:0006486|8278542|IMP  go_process N-glycan processing|GO:0006491|18768906|IMP  go_process hyperosmotic response|GO:0006972|18408158|IMP  go_function alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity|GO:0003827|15537386|IDA  go_function protein N-acetylglucosaminyltransferase activity|GO:0016262|8278542|IMP  go_function transferase activity, transferring glycosyl groups|GO:0016757|18768906|IMP  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product CGL1 (COMPLEX GLYCAN LESS 1); alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase/ protein N-acetylglucosaminyltransferase/ transferase, transferring glycosyl groups  note COMPLEX GLYCAN LESS 1 (CGL1); FUNCTIONS IN: protein N-acetylglucosaminyltransferase activity, alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: N-glycan processing, hyperosmotic response, protein amino acid glycosylation; LOCATED IN: Golgi apparatus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 13 (InterPro:IPR004139); Has 381 Blast hits to 380 proteins in 68 species: Archae - 0; Bacteria - 4; Metazoa - 311; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT4G38240.2p  transcript_id AT4G38240.2  protein_id AT4G38240.2p  transcript_id AT4G38240.2  
At4g38250	chr4:017935533	0.0	W/17935533-17936843	AT4G38250.1  CDS  gene_syn F22I13.20, F22I13_20  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product amino acid transporter family protein  note amino acid transporter family protein; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid transporter family protein (TAIR:AT2G42005.1); Has 3608 Blast hits to 3534 proteins in 200 species: Archae - 9; Bacteria - 29; Metazoa - 1615; Fungi - 618; Plants - 718; Viruses - 5; Other Eukaryotes - 614 (source: NCBI BLink).  protein_id AT4G38250.1p  transcript_id AT4G38250.1  protein_id AT4G38250.1p  transcript_id AT4G38250.1  
At4g38260	chr4:017938128	0.0	C/17938128-17938210,17937875-17938058,17937587-17937793,17937319-17937510,17937077-17937238	AT4G38260.1  CDS  gene_syn F22I13.30, F22I13_30  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF833 (InterPro:IPR008551); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20740.1); Has 805 Blast hits to 805 proteins in 317 species: Archae - 6; Bacteria - 384; Metazoa - 99; Fungi - 74; Plants - 34; Viruses - 4; Other Eukaryotes - 204 (source: NCBI BLink).  protein_id AT4G38260.1p  transcript_id AT4G38260.1  protein_id AT4G38260.1p  transcript_id AT4G38260.1  
At4g38270	chr4:017938433	0.0	W/17938433-17938471,17938613-17938668,17938768-17938816,17938910-17938960,17939039-17939176,17939442-17939582,17939669-17940003,17940089-17941046,17941135-17941410	AT4G38270.1  CDS  gene_syn F22I13.40, F22I13_40, GAUT3, Galacturonosyltransferase 3  gene GAUT3  function Encodes a protein with putative galacturonosyltransferase activity.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS  product GAUT3 (Galacturonosyltransferase 3); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups  note Galacturonosyltransferase 3 (GAUT3); FUNCTIONS IN: polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: Golgi apparatus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: GAUT1 (GALACTURONOSYLTRANSFERASE 1); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT3G61130.1); Has 793 Blast hits to 790 proteins in 135 species: Archae - 0; Bacteria - 215; Metazoa - 122; Fungi - 0; Plants - 433; Viruses - 2; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT4G38270.1p  transcript_id AT4G38270.1  protein_id AT4G38270.1p  transcript_id AT4G38270.1  
At4g38280	chr4:017942034	0.0	W/17942034-17942382,17942466-17942549,17942785-17942864	AT4G38280.1  CDS  gene_syn F22I13.50, F22I13_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45250.1); Has 43 Blast hits to 43 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G38280.1p  transcript_id AT4G38280.1  protein_id AT4G38280.1p  transcript_id AT4G38280.1  
At4g38290	chr4:017942871	0.0	W/17942871-17942879,17942983-17943097,17943707-17943909	AT4G38290.1  CDS  gene_syn F22I13.60, F22I13_60  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Hly-III related (InterPro:IPR004254); BEST Arabidopsis thaliana protein match is: HHP4 (heptahelical protein 4); receptor (TAIR:AT4G37680.1); Has 882 Blast hits to 882 proteins in 140 species: Archae - 0; Bacteria - 8; Metazoa - 535; Fungi - 175; Plants - 99; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT4G38290.1p  transcript_id AT4G38290.1  protein_id AT4G38290.1p  transcript_id AT4G38290.1  
At4g38300	chr4:017945315	0.0	C/17945315-17945491,17944899-17945240,17944556-17944870	AT4G38300.1  CDS  gene_syn F22I13.70, F22I13_70  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 10 protein  note glycosyl hydrolase family 10 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 10 protein (TAIR:AT4G38650.1); Has 1222 Blast hits to 1218 proteins in 265 species: Archae - 0; Bacteria - 637; Metazoa - 27; Fungi - 276; Plants - 160; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT4G38300.1p  transcript_id AT4G38300.1  protein_id AT4G38300.1p  transcript_id AT4G38300.1  
At4g38310	chr4:017948482	0.0	W/17948482-17948844	AT4G38310.1  CDS  gene_syn F22I13.80, F22I13_80  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product galactosyl transferase GMA12/MNN10 family protein  note galactosyl transferase GMA12/MNN10 family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Galactosyl transferase (InterPro:IPR008630); BEST Arabidopsis thaliana protein match is: galactosyl transferase GMA12/MNN10 family protein (TAIR:AT4G37690.1); Has 163 Blast hits to 163 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 163; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G38310.1p  transcript_id AT4G38310.1  protein_id AT4G38310.1p  transcript_id AT4G38310.1  
At4g38320	chr4:017949078	0.0	W/17949078-17949328,17949422-17949674,17949763-17950383	AT4G38320.1  CDS  gene_syn F22I13.90, F22I13_90, HHP5, heptahelical protein 5  gene HHP5  function heptahelical transmembrane protein HHP5  go_component integral to membrane|GO:0016021||IEA  go_process response to hormone stimulus|GO:0009725|16263907|IEP  go_process response to sucrose stimulus|GO:0009744|16263907|IEP  go_function receptor activity|GO:0004872|16263907|ISS  product HHP5 (heptahelical protein 5); receptor  note heptahelical protein 5 (HHP5); FUNCTIONS IN: receptor activity; INVOLVED IN: response to hormone stimulus, response to sucrose stimulus; LOCATED IN: integral to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Hly-III related (InterPro:IPR004254); BEST Arabidopsis thaliana protein match is: HHP4 (heptahelical protein 4); receptor (TAIR:AT4G37680.1); Has 1835 Blast hits to 1490 proteins in 297 species: Archae - 0; Bacteria - 300; Metazoa - 971; Fungi - 307; Plants - 113; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).  protein_id AT4G38320.1p  transcript_id AT4G38320.1  protein_id AT4G38320.1p  transcript_id AT4G38320.1  
At4g38330	chr4:017952294	0.0	W/17952294-17952302,17952406-17952540	AT4G38330.1  CDS  gene_syn F22I13.100, F22I13_100  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Hly-III related (InterPro:IPR004254); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38290.1); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G38330.1p  transcript_id AT4G38330.1  protein_id AT4G38330.1p  transcript_id AT4G38330.1  
At4g38340	chr4:017954710	0.0	W/17954710-17954895,17955276-17955899,17956251-17957001,17957086-17957828	AT4G38340.1  CDS  gene_syn F22I13.110, F22I13_110  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product RWP-RK domain-containing protein  note RWP-RK domain-containing protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: stem, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: RWP-RK domain-containing protein (TAIR:AT1G76350.1); Has 366 Blast hits to 279 proteins in 31 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 6; Plants - 341; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT4G38340.1p  transcript_id AT4G38340.1  protein_id AT4G38340.1p  transcript_id AT4G38340.1  
At4g38350	chr4:017966346	0.0	C/17966346-17966417,17966150-17966257,17965947-17966063,17965709-17965859,17965372-17965619,17965097-17965282,17964886-17964941,17964665-17964782,17964478-17964561,17964292-17964387,17964074-17964175,17963830-17963898,17963582-17963677,17963402-17963509,17963177-17963290,17962977-17963060,17962497-17962625,17962207-17962405,17961992-17962135,17961861-17961898,17961639-17961722,17961355-17961423,17961179-17961255,17961016-17961085,17960678-17960827,17960411-17960476,17960200-17960344,17960031-17960095,17959894-17959959,17959663-17959756,17959540-17959576,17959395-17959452,17959165-17959275,17958870-17958937,17958654-17958720,17958499-17958567,17958324-17958413	AT4G38350.1  CDS  gene_syn F22I13.120, F22I13_120  go_component vacuole|GO:0005773|14760709|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function hedgehog receptor activity|GO:0008158||IEA  go_component membrane|GO:0016020||ISS  go_function hedgehog receptor activity|GO:0008158||ISS  product hedgehog receptor  note hedgehog receptor; FUNCTIONS IN: hedgehog receptor activity; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Niemann-Pick C type protein (InterPro:IPR004765), Patched (InterPro:IPR003392), Sterol-sensing 5TM box (InterPro:IPR000731); BEST Arabidopsis thaliana protein match is: patched family protein (TAIR:AT1G42470.1); Has 2232 Blast hits to 1562 proteins in 209 species: Archae - 21; Bacteria - 61; Metazoa - 1525; Fungi - 170; Plants - 105; Viruses - 0; Other Eukaryotes - 350 (source: NCBI BLink).  protein_id AT4G38350.1p  transcript_id AT4G38350.1  protein_id AT4G38350.1p  transcript_id AT4G38350.1  
At4g38360	chr4:017967389	0.0	W/17967389-17967538,17967621-17967677,17967934-17968042,17968183-17968367,17968455-17968543,17968673-17968934,17969108-17969170	AT4G38360.1  CDS  gene_syn F22I13.130, F22I13_130  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF300 (InterPro:IPR005178); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77220.1); Has 600 Blast hits to 593 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 259; Fungi - 126; Plants - 127; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT4G38360.1p  transcript_id AT4G38360.1  protein_id AT4G38360.1p  transcript_id AT4G38360.1  
At4g38360	chr4:017967389	0.0	W/17967389-17967538,17967621-17967677,17967934-17968042,17968183-17968367,17968455-17968543,17968673-17968934,17969113-17969364,17969445-17969798	AT4G38360.2  CDS  gene_syn F22I13.130, F22I13_130  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF300 (InterPro:IPR005178); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77220.1); Has 605 Blast hits to 598 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 258; Fungi - 128; Plants - 129; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT4G38360.2p  transcript_id AT4G38360.2  protein_id AT4G38360.2p  transcript_id AT4G38360.2  
At4g38370	chr4:017971127	0.0	C/17971127-17971222,17970964-17971044,17970749-17970877,17970578-17970640,17970372-17970496,17970112-17970295	AT4G38370.1  CDS  gene_syn F22I13.140, F22I13_140  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function catalytic activity|GO:0003824||ISS  product phosphoglycerate/bisphosphoglycerate mutase family protein  note phosphoglycerate/bisphosphoglycerate mutase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078); Has 591 Blast hits to 591 proteins in 260 species: Archae - 2; Bacteria - 443; Metazoa - 0; Fungi - 40; Plants - 30; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT4G38370.1p  transcript_id AT4G38370.1  protein_id AT4G38370.1p  transcript_id AT4G38370.1  
At4g38380	chr4:017974519	0.0	C/17974519-17974787,17974277-17974419,17974044-17974187,17973811-17973971,17973565-17973700,17973365-17973461,17973173-17973273,17972919-17973082,17972737-17972808,17972507-17972623,17972345-17972440,17972132-17972253,17971977-17972025,17971855-17971866	AT4G38380.1  CDS  gene_syn F22I13.150, F22I13_150  go_component chloroplast|GO:0009507|18431481|IDA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  product antiporter/ drug transporter  note antiporter/ drug transporter; FUNCTIONS IN: drug transporter activity, antiporter activity; INVOLVED IN: multidrug transport; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT2G38330.1); Has 7271 Blast hits to 7248 proteins in 1132 species: Archae - 174; Bacteria - 5061; Metazoa - 70; Fungi - 101; Plants - 194; Viruses - 0; Other Eukaryotes - 1671 (source: NCBI BLink).  protein_id AT4G38380.1p  transcript_id AT4G38380.1  protein_id AT4G38380.1p  transcript_id AT4G38380.1  
At4g38390	chr4:017976042	0.0	W/17976042-17976296,17976376-17976466,17976555-17976631,17976717-17976805,17976902-17977091,17977162-17977343,17977426-17977528,17977630-17977961,17978044-17978380	AT4G38390.1  CDS  gene_syn F22I13.160, F22I13_160  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, pollen tube; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76270.1); Has 433 Blast hits to 427 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 433; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G38390.1p  transcript_id AT4G38390.1  protein_id AT4G38390.1p  transcript_id AT4G38390.1  
At4g38400	chr4:017979542	0.0	C/17979542-17979665,17979145-17979439,17978675-17979053	AT4G38400.1  CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN-LIKE A2, ATEXLA2, ATEXPL2, ATHEXP BETA 2.2, EXPANSIN L2, EXPL2, F22I13.170, F22I13_170  gene ATEXLA2  function member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_process plant-type cell wall organization|GO:0009664||ISS  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  product ATEXLA2 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A2)  note ARABIDOPSIS THALIANA EXPANSIN-LIKE A2 (ATEXLA2); INVOLVED IN: response to cyclopentenone, plant-type cell wall organization, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: ATEXLA1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A1) (TAIR:AT3G45970.1); Has 1262 Blast hits to 1261 proteins in 103 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1257; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G38400.1p  transcript_id AT4G38400.1  protein_id AT4G38400.1p  transcript_id AT4G38400.1  
At4g38401	chr4:017979763	0.0	C/17979763-17979885	AT4G38401.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G38401.1p  transcript_id AT4G38401.1  protein_id AT4G38401.1p  transcript_id AT4G38401.1  
At4g38405	chr4:017980417	0.0	C/17980417-17980557	AT4G38405.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G38405.1p  transcript_id AT4G38405.1  protein_id AT4G38405.1p  transcript_id AT4G38405.1  
At4g38410	chr4:017981025	0.0	W/17981025-17981216,17981305-17981604	AT4G38410.1  CDS  gene_syn F22I13.180, F22I13_180  go_process response to stress|GO:0006950||IEA  go_process response to water|GO:0009415||IEA  go_component cellular_component|GO:0005575||ND  go_process response to stress|GO:0006950||ISS  go_process response to water|GO:0009415||ISS  go_function molecular_function|GO:0003674||ND  product dehydrin, putative  note dehydrin, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to water, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10); actin binding (TAIR:AT1G20450.1); Has 2913 Blast hits to 1827 proteins in 215 species: Archae - 2; Bacteria - 25; Metazoa - 715; Fungi - 134; Plants - 1067; Viruses - 0; Other Eukaryotes - 970 (source: NCBI BLink).  protein_id AT4G38410.1p  transcript_id AT4G38410.1  protein_id AT4G38410.1p  transcript_id AT4G38410.1  
At4g38420	chr4:017982840	0.0	W/17982840-17982986,17983085-17983194,17983424-17983694,17983783-17983888,17983979-17984705,17984806-17984884,17984964-17985173	AT4G38420.1  CDS  gene_syn F22I13.190, F22I13_190, SKU5 Similar 9, sks9  gene sks9  go_function copper ion binding|GO:0005507||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  product sks9 (SKU5 Similar 9); copper ion binding / oxidoreductase  note SKU5 Similar 9 (sks9); FUNCTIONS IN: oxidoreductase activity, copper ion binding; LOCATED IN: plant-type cell wall; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: sks10 (SKU5 Similar 10); copper ion binding / oxidoreductase (TAIR:AT4G28090.1); Has 3531 Blast hits to 3492 proteins in 612 species: Archae - 2; Bacteria - 944; Metazoa - 250; Fungi - 1403; Plants - 793; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).  protein_id AT4G38420.1p  transcript_id AT4G38420.1  protein_id AT4G38420.1p  transcript_id AT4G38420.1  
At4g38430	chr4:017986643	0.0	W/17986643-17986910,17986998-17987114,17987201-17987721,17987834-17988187,17988273-17988659	AT4G38430.1  CDS  gene_syn ATROPGEF1, F22I13.200, F22I13_200, KINASE PARTNER PROTEIN-LIKE, KPP-LIKE, ROPGEF1  gene ROPGEF1  function Member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily, also known as DUF315). Interacts with ROP1 but the whole protein lacks Rho guanyl-nucleotide exchange factor activity in vitro. The DUF315/PRONE domain is sufficient to confer RopGEF catalytic activity.  go_component apical plasma membrane|GO:0016324|16415208|IDA  go_process pollen tube growth|GO:0009860|16415208|IMP  go_function Rho guanyl-nucleotide exchange factor activity|GO:0005089|15980860|IDA  go_function Rho guanyl-nucleotide exchange factor activity|GO:0005089|16415208|IDA  go_function protein binding|GO:0005515|15980860|TAS  product ROPGEF1; Rho guanyl-nucleotide exchange factor/ protein binding  note ROPGEF1; FUNCTIONS IN: protein binding, Rho guanyl-nucleotide exchange factor activity; INVOLVED IN: pollen tube growth; LOCATED IN: apical plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: ROPGEF7; Rho guanyl-nucleotide exchange factor (TAIR:AT5G02010.1); Has 175 Blast hits to 174 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 175; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G38430.1p  transcript_id AT4G38430.1  protein_id AT4G38430.1p  transcript_id AT4G38430.1  
At4g38440	chr4:017989115	0.0	W/17989115-17989288,17989477-17990317,17990382-17990497,17990660-17990838,17990942-17991047,17991141-17991401,17991498-17991686,17991847-17993988,17994079-17994288,17994370-17994549	AT4G38440.1  CDS  gene_syn F22I13.210, F22I13_210  go_component chloroplast|GO:0009507||IEA  product unknown protein  note LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II-associated protein 1, C-terminal (InterPro:IPR013929), RNA polymerase II-associated protein 1, N-terminal (InterPro:IPR013930); Has 210 Blast hits to 166 proteins in 68 species: Archae - 0; Bacteria - 2; Metazoa - 135; Fungi - 41; Plants - 22; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT4G38440.1p  transcript_id AT4G38440.1  protein_id AT4G38440.1p  transcript_id AT4G38440.1  
At4g38460	chr4:017994849	0.0	W/17994849-17995202,17995348-17995974	AT4G38460.1  CDS  gene_syn GGR, geranylgeranyl reductase  gene GGR  go_component chloroplast|GO:0009507|18431481|IDA  go_process isoprenoid biosynthetic process|GO:0008299||IEA  go_function farnesyltranstransferase activity|GO:0004311|10759500|IDA  product GGR (geranylgeranyl reductase); farnesyltranstransferase  note geranylgeranyl reductase (GGR); FUNCTIONS IN: farnesyltranstransferase activity; INVOLVED IN: isoprenoid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: GGPS1 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1); farnesyltranstransferase (TAIR:AT4G36810.1); Has 9804 Blast hits to 9803 proteins in 1646 species: Archae - 213; Bacteria - 4792; Metazoa - 110; Fungi - 109; Plants - 266; Viruses - 6; Other Eukaryotes - 4308 (source: NCBI BLink).  protein_id AT4G38460.1p  transcript_id AT4G38460.1  protein_id AT4G38460.1p  transcript_id AT4G38460.1  
At4g38470	chr4:017999432	0.0	W/17999432-17999640,17999723-17999837,18000044-18000120,18000228-18000347,18000449-18000503,18000954-18001064,18001317-18001367,18001578-18001750,18001847-18001954,18002051-18002124,18002223-18002398,18002700-18002795,18002936-18003016,18003113-18003166,18003240-18003374,18003459-18003551	AT4G38470.1  CDS  gene_syn F20M13.30, F20M13_30  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process metabolic process|GO:0008152||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_function protein kinase activity|GO:0004672||ISS  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, protein kinase activity; INVOLVED IN: protein amino acid phosphorylation, metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Amino acid-binding ACT (InterPro:IPR002912), Tyrosine protein kinase (InterPro:IPR001245), ATMRK serine/threonine protein kinase-like (InterPro:IPR015783), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G35780.1); Has 97982 Blast hits to 96223 proteins in 3577 species: Archae - 79; Bacteria - 8432; Metazoa - 43587; Fungi - 8194; Plants - 19438; Viruses - 506; Other Eukaryotes - 17746 (source: NCBI BLink).  protein_id AT4G38470.1p  transcript_id AT4G38470.1  protein_id AT4G38470.1p  transcript_id AT4G38470.1  
At4g38480	chr4:018003957	0.0	W/18003957-18004073,18004354-18004605,18004703-18004846,18004924-18005595,18005772-18006002	AT4G38480.1  CDS  gene_syn F20M13.40, F20M13_40  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT4G35140.1); Has 60809 Blast hits to 15539 proteins in 663 species: Archae - 192; Bacteria - 33128; Metazoa - 10044; Fungi - 4604; Plants - 1792; Viruses - 697; Other Eukaryotes - 10352 (source: NCBI BLink).  protein_id AT4G38480.1p  transcript_id AT4G38480.1  protein_id AT4G38480.1p  transcript_id AT4G38480.1  
At4g38490	chr4:018006385	0.0	W/18006385-18006421,18006516-18006598,18006673-18006818,18006917-18006998,18007090-18007203	AT4G38490.1  CDS  gene_syn F20M13.50, F20M13_50  product unknown protein  note unknown protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 15 Blast hits to 15 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G38490.1p  transcript_id AT4G38490.1  protein_id AT4G38490.1p  transcript_id AT4G38490.1  
At4g38495	chr4:018007851	0.0	C/18007851-18008025,18007693-18007760,18007466-18007597	AT4G38495.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: YL1 nuclear, C-terminal (InterPro:IPR013272); Has 189 Blast hits to 189 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 80; Fungi - 83; Plants - 17; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT4G38495.1p  transcript_id AT4G38495.1  protein_id AT4G38495.1p  transcript_id AT4G38495.1  
At4g38500	chr4:018008418	0.0	W/18008418-18008499,18008693-18008872,18009034-18009105,18009178-18009368,18009469-18009884,18010059-18010243,18010320-18010693	AT4G38500.1  CDS  gene_syn F20M13.60, F20M13_60  go_component Golgi apparatus|GO:0005794|16618929|IDA  product unknown protein  note unknown protein; LOCATED IN: Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF616 (InterPro:IPR006852); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28240.1); Has 167 Blast hits to 167 proteins in 24 species: Archae - 6; Bacteria - 22; Metazoa - 0; Fungi - 0; Plants - 106; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT4G38500.1p  transcript_id AT4G38500.1  protein_id AT4G38500.1p  transcript_id AT4G38500.1  
At4g38510	chr4:018014735	0.0	C/18014735-18014789,18014557-18014612,18014381-18014479,18014170-18014229,18013984-18014095,18013692-18013900,18013214-18013342,18012987-18013124,18012741-18012891,18012260-18012342,18011755-18011802,18011624-18011677,18011423-18011506,18011155-18011340	AT4G38510.1  CDS  gene_syn F22I13.8, VHA-B2  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_process proton transport|GO:0015992||IEA  go_process ATP metabolic process|GO:0046034||IEA  go_function hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances|GO:0016820||IEA  go_function hydrogen ion transporting ATP synthase activity, rotational mechanism|GO:0046933||IEA  go_function proton-transporting ATPase activity, rotational mechanism|GO:0046961||IEA  go_function hydrogen ion transporting ATP synthase activity, rotational mechanism|GO:0046933||ISS  product vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putative / vacuolar proton pump B subunit, putative / V-ATPase 57 kDa subunit, putative  note vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putative / vacuolar proton pump B subunit, putative / V-ATPase 57 kDa subunit, putative; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: proton transport, ATP metabolic process, ATP synthesis coupled proton transport; LOCATED IN: plasma membrane, vacuole, membrane, chloroplast envelope; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal (InterPro:IPR000793), ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR004100), ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding (InterPro:IPR000194), ATPase, V1 complex, subunit B (InterPro:IPR005723); BEST Arabidopsis thaliana protein match is: vacuolar ATP synthase subunit B / V-ATPase B subunit / vacuolar proton pump B subunit / V-ATPase 57 kDa subunit (TAIR:AT1G76030.1); Has 29435 Blast hits to 28738 proteins in 7063 species: Archae - 684; Bacteria - 12531; Metazoa - 1350; Fungi - 553; Plants - 6688; Viruses - 0; Other Eukaryotes - 7629 (source: NCBI BLink).  protein_id AT4G38510.1p  transcript_id AT4G38510.1  protein_id AT4G38510.1p  transcript_id AT4G38510.1  
At4g38510	chr4:018014735	0.0	C/18014735-18014789,18014557-18014612,18014381-18014479,18014170-18014229,18013984-18014095,18013692-18013900,18013214-18013342,18012987-18013124,18012741-18012891,18012260-18012342,18011755-18011802,18011624-18011677,18011423-18011506,18011155-18011340	AT4G38510.2  CDS  gene_syn F22I13.8, VHA-B2  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_process proton transport|GO:0015992||IEA  go_process ATP metabolic process|GO:0046034||IEA  go_function hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances|GO:0016820||IEA  go_function hydrogen ion transporting ATP synthase activity, rotational mechanism|GO:0046933||IEA  go_function proton-transporting ATPase activity, rotational mechanism|GO:0046961||IEA  go_function hydrogen ion transporting ATP synthase activity, rotational mechanism|GO:0046933||ISS  product vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putative / vacuolar proton pump B subunit, putative / V-ATPase 57 kDa subunit, putative  note vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putative / vacuolar proton pump B subunit, putative / V-ATPase 57 kDa subunit, putative; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: proton transport, ATP metabolic process, ATP synthesis coupled proton transport; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal (InterPro:IPR000793), ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR004100), ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding (InterPro:IPR000194), ATPase, V1 complex, subunit B (InterPro:IPR005723); BEST Arabidopsis thaliana protein match is: vacuolar ATP synthase subunit B / V-ATPase B subunit / vacuolar proton pump B subunit / V-ATPase 57 kDa subunit (TAIR:AT1G76030.1); Has 29435 Blast hits to 28738 proteins in 7063 species: Archae - 684; Bacteria - 12531; Metazoa - 1350; Fungi - 553; Plants - 6688; Viruses - 0; Other Eukaryotes - 7629 (source: NCBI BLink).  protein_id AT4G38510.2p  transcript_id AT4G38510.2  protein_id AT4G38510.2p  transcript_id AT4G38510.2  
At4g38510	chr4:018014735	0.0	C/18014735-18014789,18014557-18014612,18014381-18014479,18014170-18014229,18013984-18014095,18013692-18013900,18013214-18013342,18012987-18013124,18012741-18012891,18012260-18012342,18011755-18011802,18011624-18011677,18011423-18011506,18011155-18011340	AT4G38510.3  CDS  gene_syn F22I13.8, VHA-B2  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_process proton transport|GO:0015992||IEA  go_process ATP metabolic process|GO:0046034||IEA  go_function hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances|GO:0016820||IEA  go_function hydrogen ion transporting ATP synthase activity, rotational mechanism|GO:0046933||IEA  go_function proton-transporting ATPase activity, rotational mechanism|GO:0046961||IEA  go_function hydrogen ion transporting ATP synthase activity, rotational mechanism|GO:0046933||ISS  product vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putative / vacuolar proton pump B subunit, putative / V-ATPase 57 kDa subunit, putative  note vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putative / vacuolar proton pump B subunit, putative / V-ATPase 57 kDa subunit, putative; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: proton transport, ATP metabolic process, ATP synthesis coupled proton transport; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal (InterPro:IPR000793), ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR004100), ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding (InterPro:IPR000194), ATPase, V1 complex, subunit B (InterPro:IPR005723); BEST Arabidopsis thaliana protein match is: vacuolar ATP synthase subunit B / V-ATPase B subunit / vacuolar proton pump B subunit / V-ATPase 57 kDa subunit (TAIR:AT1G76030.1); Has 29435 Blast hits to 28738 proteins in 7063 species: Archae - 684; Bacteria - 12531; Metazoa - 1350; Fungi - 553; Plants - 6688; Viruses - 0; Other Eukaryotes - 7629 (source: NCBI BLink).  protein_id AT4G38510.3p  transcript_id AT4G38510.3  protein_id AT4G38510.3p  transcript_id AT4G38510.3  
At4g38510	chr4:018014735	0.0	C/18014735-18014789,18014557-18014612,18014381-18014479,18014170-18014229,18013984-18014095,18013692-18013900,18013214-18013342,18012987-18013124,18012741-18012891,18012260-18012342,18011755-18011802,18011624-18011677,18011423-18011506,18011155-18011340	AT4G38510.4  CDS  gene_syn F22I13.8, VHA-B2  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_process proton transport|GO:0015992||IEA  go_process ATP metabolic process|GO:0046034||IEA  go_function hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances|GO:0016820||IEA  go_function hydrogen ion transporting ATP synthase activity, rotational mechanism|GO:0046933||IEA  go_function proton-transporting ATPase activity, rotational mechanism|GO:0046961||IEA  go_function hydrogen ion transporting ATP synthase activity, rotational mechanism|GO:0046933||ISS  product vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putative / vacuolar proton pump B subunit, putative / V-ATPase 57 kDa subunit, putative  note vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putative / vacuolar proton pump B subunit, putative / V-ATPase 57 kDa subunit, putative; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: proton transport, ATP metabolic process, ATP synthesis coupled proton transport; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal (InterPro:IPR000793), ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR004100), ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding (InterPro:IPR000194), ATPase, V1 complex, subunit B (InterPro:IPR005723); BEST Arabidopsis thaliana protein match is: vacuolar ATP synthase subunit B / V-ATPase B subunit / vacuolar proton pump B subunit / V-ATPase 57 kDa subunit (TAIR:AT1G76030.1); Has 29435 Blast hits to 28738 proteins in 7063 species: Archae - 684; Bacteria - 12531; Metazoa - 1350; Fungi - 553; Plants - 6688; Viruses - 0; Other Eukaryotes - 7629 (source: NCBI BLink).  protein_id AT4G38510.4p  transcript_id AT4G38510.4  protein_id AT4G38510.4p  transcript_id AT4G38510.4  
At4g38520	chr4:018017196	0.0	C/18017196-18017514,18016688-18017055,18016361-18016597,18015999-18016277	AT4G38520.1  CDS  gene_syn F20M13.80, F20M13_80  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C family protein / PP2C family protein  note protein phosphatase 2C family protein / PP2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C family protein / PP2C family protein (TAIR:AT5G66080.1); Has 3650 Blast hits to 3649 proteins in 220 species: Archae - 0; Bacteria - 8; Metazoa - 1278; Fungi - 396; Plants - 1219; Viruses - 5; Other Eukaryotes - 744 (source: NCBI BLink).  protein_id AT4G38520.1p  transcript_id AT4G38520.1  protein_id AT4G38520.1p  transcript_id AT4G38520.1  
At4g38520	chr4:018017196	0.0	C/18017196-18017514,18016688-18017055,18016361-18016597,18015999-18016277	AT4G38520.2  CDS  gene_syn F20M13.80, F20M13_80  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C family protein / PP2C family protein  note protein phosphatase 2C family protein / PP2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C family protein / PP2C family protein (TAIR:AT5G66080.1); Has 3650 Blast hits to 3649 proteins in 220 species: Archae - 0; Bacteria - 8; Metazoa - 1278; Fungi - 396; Plants - 1219; Viruses - 5; Other Eukaryotes - 744 (source: NCBI BLink).  protein_id AT4G38520.2p  transcript_id AT4G38520.2  protein_id AT4G38520.2p  transcript_id AT4G38520.2  
At4g38530	chr4:018020708	0.0	W/18020708-18021016,18021102-18021298,18021384-18021519,18021605-18021993,18022092-18022209,18022278-18022508,18022584-18022898	AT4G38530.1  CDS  gene_syn ARABIDOPSIS THALIANA PHOSPHOLIPASE C 1, ATPLC1  gene ATPLC1  function Encodes a putative phosphoinositide-specific phospholipase C. There are two genes called ATPLC1, one corresponding to AT4g38530 (this one) and one corresponding to AT5g58670.  go_process lipid metabolic process|GO:0006629||IEA  go_process signal transduction|GO:0007165||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_component cellular_component|GO:0005575||ND  go_process signal transduction|GO:0007165||ISS  go_function phospholipase C activity|GO:0004629|7716237|ISS  product ATPLC1 (ARABIDOPSIS THALIANA PHOSPHOLIPASE C 1); phospholipase C  note ARABIDOPSIS THALIANA PHOSPHOLIPASE C 1 (ATPLC1); FUNCTIONS IN: phospholipase C activity; INVOLVED IN: signal transduction, intracellular signaling cascade, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphoinositol-specific, EF-hand-like (InterPro:IPR015359), Phospholipase C, phosphatidylinositol-specific , X region (InterPro:IPR000909), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phospholipase C, phosphoinositol-specific, C-terminal (PLC) (InterPro:IPR001192), Phospholipase C, phosphatidylinositol-specific, Y domain (InterPro:IPR001711), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), C2 membrane targeting protein (InterPro:IPR018029), EF-HAND 2 (InterPro:IPR018249), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: PLC1 (PHOSPHOLIPASE C 1); phospholipase C (TAIR:AT5G58670.1); Has 2066 Blast hits to 1545 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 1459; Fungi - 280; Plants - 162; Viruses - 0; Other Eukaryotes - 165 (source: NCBI BLink).  protein_id AT4G38530.1p  transcript_id AT4G38530.1  protein_id AT4G38530.1p  transcript_id AT4G38530.1  
At4g38545	chr4:018022983	0.0	C/18022983-18025243	AT4G38545.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT4G38530 and AT4G38540  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G38545.2  
At4g38545	chr4:018023022	0.0	C/18023022-18025287	AT4G38545.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT4G38530 and AT4G38540  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G38545.1  
At4g38540	chr4:018023187	0.0	W/18023187-18023266,18023335-18023481,18023562-18023624,18023713-18023875,18023956-18024184,18024286-18024827	AT4G38540.1  CDS  gene_syn F20M13.100, F20M13_100  go_process metabolic process|GO:0008152||IEA  go_function monooxygenase activity|GO:0004497||ISS  product monooxygenase, putative (MO2)  note monooxygenase, putative (MO2); FUNCTIONS IN: monooxygenase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Aromatic-ring hydroxylase-like (InterPro:IPR003042), Monooxygenase, FAD-binding (InterPro:IPR002938); BEST Arabidopsis thaliana protein match is: monooxygenase, putative (MO3) (TAIR:AT5G05320.1); Has 3284 Blast hits to 3277 proteins in 636 species: Archae - 32; Bacteria - 1676; Metazoa - 5; Fungi - 789; Plants - 275; Viruses - 0; Other Eukaryotes - 507 (source: NCBI BLink).  protein_id AT4G38540.1p  transcript_id AT4G38540.1  protein_id AT4G38540.1p  transcript_id AT4G38540.1  
At4g38550	chr4:018025886	0.0	W/18025886-18025937,18026082-18026299,18026404-18026508,18026589-18026717,18026811-18026933,18027008-18027127,18027239-18027385,18027502-18027708,18027809-18028546	AT4G38550.1  CDS  gene_syn F20M13.110, F20M13_110  go_component chloroplast|GO:0009507||IEA  product unknown protein  note LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20950.1); Has 2527 Blast hits to 1973 proteins in 273 species: Archae - 3; Bacteria - 103; Metazoa - 1039; Fungi - 619; Plants - 503; Viruses - 44; Other Eukaryotes - 216 (source: NCBI BLink).  protein_id AT4G38550.1p  transcript_id AT4G38550.1  protein_id AT4G38550.1p  transcript_id AT4G38550.1  
At4g38560	chr4:018029275	0.0	W/18029275-18029395,18029487-18029761,18029856-18030302,18030469-18031191	AT4G38560.1  CDS  gene_syn F20M13.120, F20M13_120  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: pEARLI4 (TAIR:AT2G20960.1); Has 160 Blast hits to 150 proteins in 35 species: Archae - 7; Bacteria - 12; Metazoa - 33; Fungi - 2; Plants - 75; Viruses - 2; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT4G38560.1p  transcript_id AT4G38560.1  protein_id AT4G38560.1p  transcript_id AT4G38560.1  
At4g38560	chr4:018029275	0.0	W/18029275-18029395,18029487-18029761,18029856-18030308,18030469-18031191	AT4G38560.2  CDS  gene_syn F20M13.120, F20M13_120  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: pEARLI4 (TAIR:AT2G20960.1); Has 131 Blast hits to 121 proteins in 30 species: Archae - 7; Bacteria - 12; Metazoa - 16; Fungi - 0; Plants - 75; Viruses - 2; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT4G38560.2p  transcript_id AT4G38560.2  protein_id AT4G38560.2p  transcript_id AT4G38560.2  
At4g38570	chr4:018033034	0.0	C/18033034-18033091,18032856-18032940,18032695-18032744,18032453-18032492,18032308-18032352,18032130-18032195,18031922-18032036,18031762-18031818,18031574-18031672,18031420-18031482	AT4G38570.1  CDS  gene_syn F20M13.130, F20M13_130, PIS2, PROBABLE CDP-DIACYLGLYCEROL--INOSITOL 3-PHOSPHATIDYLTRANSFERASE 2  gene PIS2  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_function phosphotransferase activity, for other substituted phosphate groups|GO:0016780||IEA  go_process phosphatidylinositol biosynthetic process|GO:0006661|10809447|TAS  product PIS2 (PROBABLE CDP-DIACYLGLYCEROL--INOSITOL 3-PHOSPHATIDYLTRANSFERASE 2); phosphotransferase, for other substituted phosphate groups  note PROBABLE CDP-DIACYLGLYCEROL--INOSITOL 3-PHOSPHATIDYLTRANSFERASE 2 (PIS2); FUNCTIONS IN: phosphotransferase activity, for other substituted phosphate groups; INVOLVED IN: phosphatidylinositol biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CDP-alcohol phosphatidyltransferase (InterPro:IPR000462), CDP-diacylglycerol-inositol 3-phosphatidyltransferase, eukaryote (InterPro:IPR014387); BEST Arabidopsis thaliana protein match is: ATPIS1 (PHOSPHATIDYLINOSITOL SYNTHASE 1); CDP-diacylglycerol-inositol 3-phosphatidyltransferase (TAIR:AT1G68000.1); Has 1789 Blast hits to 1789 proteins in 607 species: Archae - 10; Bacteria - 915; Metazoa - 140; Fungi - 115; Plants - 45; Viruses - 0; Other Eukaryotes - 564 (source: NCBI BLink).  protein_id AT4G38570.1p  transcript_id AT4G38570.1  protein_id AT4G38570.1p  transcript_id AT4G38570.1  
At4g38580	chr4:018034596	0.0	W/18034596-18034673,18035310-18035693	AT4G38580.1  CDS  gene_syn ATFP6, F20M13.140, F20M13_140, FARNESYLATED PROTEIN 6, HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, HIPP26  gene ATFP6  function putative farnesylated protein (At4g38580) mRNA, complete  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function metal ion binding|GO:0046872||IEA  go_process heat acclimation|GO:0010286|16807682|IEP  go_function metal ion binding|GO:0046872||ISS  product ATFP6 (FARNESYLATED PROTEIN 6); metal ion binding  note FARNESYLATED PROTEIN 6 (ATFP6); FUNCTIONS IN: metal ion binding; INVOLVED IN: heat acclimation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related (TAIR:AT4G35060.1); Has 655 Blast hits to 599 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 655; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G38580.1p  transcript_id AT4G38580.1  protein_id AT4G38580.1p  transcript_id AT4G38580.1  
At4g38590	chr4:018036116	0.0	W/18036116-18036319,18036395-18036490,18036576-18036688,18036752-18036911,18036994-18037232,18037304-18037409,18037475-18037559,18037632-18037750,18037824-18037991,18038068-18038231,18038330-18038439,18038516-18038625,18038701-18038811,18038896-18038997,18039074-18039219,18039294-18039648,18039733-18039986,18040412-18040928	AT4G38590.2  CDS  gene_syn BGAL14, F20M13.150, F20M13_150, beta-galactosidase 14  gene BGAL14  function putative beta-galactosidase (BGAL14 gene)  go_component nucleus|GO:0005634||IEA  go_component beta-galactosidase complex|GO:0009341||IEA  go_component endomembrane system|GO:0012505||IEA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  go_function sugar binding|GO:0005529||IEA  go_function cation binding|GO:0043169||IEA  go_function beta-galactosidase activity|GO:0004565||ISS  product glycosyl hydrolase family 35 protein  note beta-galactosidase 14 (BGAL14); FUNCTIONS IN: sugar binding, cation binding, beta-galactosidase activity, catalytic activity; INVOLVED IN: nuclear mRNA splicing, via spliceosome, carbohydrate metabolic process; LOCATED IN: endomembrane system, nucleus, beta-galactosidase complex; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: PRP1 splicing factor, N-terminal (InterPro:IPR010491), Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: BGAL13; beta-galactosidase (TAIR:AT2G16730.1).  protein_id AT4G38590.2p  transcript_id AT4G38590.2  protein_id AT4G38590.2p  transcript_id AT4G38590.2  
At4g38590	chr4:018036395	0.0	W/18036395-18036490,18036576-18036688,18036752-18036911,18036994-18037232,18037304-18037409,18037475-18037559,18037632-18037750,18037824-18037991,18038068-18038243,18038330-18038439,18038516-18038625,18038701-18038811,18038896-18038997,18039074-18039219,18039294-18039648,18039733-18039986,18040412-18040928	AT4G38590.1  CDS  gene_syn BGAL14, F20M13.150, F20M13_150, beta-galactosidase 14  gene BGAL14  function putative beta-galactosidase (BGAL14 gene)  go_component nucleus|GO:0005634||IEA  go_component beta-galactosidase complex|GO:0009341||IEA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  go_function sugar binding|GO:0005529||IEA  go_function cation binding|GO:0043169||IEA  go_function beta-galactosidase activity|GO:0004565||ISS  product glycosyl hydrolase family 35 protein  note beta-galactosidase 14 (BGAL14); FUNCTIONS IN: cation binding, sugar binding, beta-galactosidase activity, catalytic activity; INVOLVED IN: nuclear mRNA splicing, via spliceosome, carbohydrate metabolic process; LOCATED IN: nucleus, beta-galactosidase complex; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: PRP1 splicing factor, N-terminal (InterPro:IPR010491), Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Galactose-binding like (InterPro:IPR008979), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGAL13; beta-galactosidase (TAIR:AT2G16730.1); Has 28855 Blast hits to 8970 proteins in 566 species: Archae - 58; Bacteria - 831; Metazoa - 16261; Fungi - 1979; Plants - 1035; Viruses - 477; Other Eukaryotes - 8214 (source: NCBI BLink).  protein_id AT4G38590.1p  transcript_id AT4G38590.1  protein_id AT4G38590.1p  transcript_id AT4G38590.1  
At4g38600	chr4:018048393	0.0	C/18048393-18049073,18048170-18048280,18047976-18048092,18047714-18047884,18047479-18047640,18046968-18047204,18046762-18046883,18045326-18046685,18045051-18045146,18043200-18044741,18042859-18043083,18042671-18042775,18042412-18042492,18042251-18042319,18042011-18042130,18041651-18041770,18041503-18041568	AT4G38600.2  CDS  gene_syn AT4G38610, F20M13.160, F20M13_160, KAK, KAKTUS, UBIQUITIN-PROTEIN LIGASE 3, UBIQUITIN_PROTEIN LIGASE, UPL3  gene KAK  function encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process trichome branching|GO:0010091|10224275|IMP  go_process DNA endoreduplication|GO:0042023|10224275|IMP  go_function ubiquitin-protein ligase activity|GO:0004842|12969426|ISS  product KAK (KAKTUS); ubiquitin-protein ligase  note KAKTUS (KAK); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: trichome branching, DNA endoreduplication; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), HECT (InterPro:IPR000569); BEST Arabidopsis thaliana protein match is: UPL4; ubiquitin-protein ligase (TAIR:AT5G02880.1); Has 4889 Blast hits to 4293 proteins in 232 species: Archae - 2; Bacteria - 153; Metazoa - 2949; Fungi - 601; Plants - 316; Viruses - 3; Other Eukaryotes - 865 (source: NCBI BLink).  protein_id AT4G38600.2p  transcript_id AT4G38600.2  protein_id AT4G38600.2p  transcript_id AT4G38600.2  
At4g38600	chr4:018048393	0.0	C/18048393-18049292,18048170-18048280,18047976-18048092,18047714-18047884,18047479-18047640,18046968-18047204,18046762-18046883,18045272-18046685,18045051-18045146,18043200-18044741,18042859-18043083,18042671-18042775,18042412-18042492,18042251-18042319,18042011-18042139,18041651-18041770,18041503-18041568	AT4G38600.1  CDS  gene_syn AT4G38610, F20M13.160, F20M13_160, KAK, KAKTUS, UBIQUITIN-PROTEIN LIGASE 3, UBIQUITIN_PROTEIN LIGASE, UPL3  gene KAK  function encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process trichome branching|GO:0010091|10224275|IMP  go_process DNA endoreduplication|GO:0042023|10224275|IMP  go_function ubiquitin-protein ligase activity|GO:0004842|12969426|ISS  product KAK (KAKTUS); ubiquitin-protein ligase  note KAKTUS (KAK); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: trichome branching, DNA endoreduplication; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), HECT (InterPro:IPR000569); BEST Arabidopsis thaliana protein match is: UPL4; ubiquitin-protein ligase (TAIR:AT5G02880.1); Has 12164 Blast hits to 6970 proteins in 370 species: Archae - 6; Bacteria - 541; Metazoa - 5146; Fungi - 1490; Plants - 471; Viruses - 70; Other Eukaryotes - 4440 (source: NCBI BLink).  protein_id AT4G38600.1p  transcript_id AT4G38600.1  protein_id AT4G38600.1p  transcript_id AT4G38600.1  
At4g38620	chr4:018053866	0.0	W/18053866-18054128,18054291-18054876	AT4G38620.1  CDS  gene_syn ARABIDOPSIS MYB DOMAIN PROTEIN 4, ATMYB4, MYB4, T9A14.11  gene MYB4  function Encodes a R2R3 MYB protein which is involved in the response to UV-B. It functions as a repressor of target gene expression. One of its target genes encodes cinnamate 4-hydroxylase; mutants accumulate sinapate esters in their leaves. MYB4 binds to its own promoter and represses its own expression. Nuclear localization of MYB4 depends on the action of the beta importin SAD2.  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to UV-B|GO:0010224|11080161|IEP  go_process response to UV-B|GO:0010224|11080161|IMP  go_process negative regulation of transcription|GO:0016481|11080161|IMP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677|17993626|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB4; DNA binding / transcription factor  note MYB4; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 10 processes; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: AtMYB32 (myb domain protein 32); DNA binding / transcription factor (TAIR:AT4G34990.1); Has 6507 Blast hits to 5964 proteins in 363 species: Archae - 0; Bacteria - 0; Metazoa - 708; Fungi - 325; Plants - 3845; Viruses - 3; Other Eukaryotes - 1626 (source: NCBI BLink).  protein_id AT4G38620.1p  transcript_id AT4G38620.1  protein_id AT4G38620.1p  transcript_id AT4G38620.1  
At4g38630	chr4:018059448	0.0	C/18059448-18059459,18059253-18059366,18059053-18059158,18058811-18058925,18058519-18058731,18058028-18058307,18057847-18057943,18057663-18057763,18057496-18057564,18057357-18057410	AT4G38630.1  CDS  gene_syn ATMCB1, MBP1, MCB1, MULTIUBIQUITIN CHAIN BINDING PROTEIN, MULTIUBIQUITIN CHAIN BINDING PROTEIN 1, MULTIUBIQUITIN-CHAIN-BINDING PROTEIN 1, REGULATORY PARTICLE NON-ATPASE 10, RPN10, T9A14.7  gene RPN10  function Regulatory particle non-ATPase subunit of the 26S proteasome with multiubiquitin-chain-binding capabilities  go_component membrane|GO:0016020|17432890|IDA  go_component proteasome complex|GO:0000502|10363660|TAS  go_component proteasome complex|GO:0000502|12671091|IDA  go_component nucleus|GO:0005634|11742986|TAS  go_component cytosol|GO:0005829|18433157|IDA  go_component proteasome regulatory particle, base subcomplex|GO:0008540|9741626|IDA  go_component proteasome regulatory particle, base subcomplex|GO:0008540||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_process response to DNA damage stimulus|GO:0006974|12671091|IMP  go_process response to heat|GO:0009408|17971041|IMP  go_process pollen development|GO:0009555|12671091|IMP  go_process response to salt stress|GO:0009651|12671091|IMP  go_process response to auxin stimulus|GO:0009733|12671091|IMP  go_process response to cytokinin stimulus|GO:0009735|12671091|IEP  go_process response to cytokinin stimulus|GO:0009735|12671091|IMP  go_process response to abscisic acid stimulus|GO:0009737|12671091|IMP  go_process response to sucrose stimulus|GO:0009744|12671091|IMP  go_process regulation of seed germination|GO:0010029|12671091|IMP  go_process leaf senescence|GO:0010150|12671091|IMP  go_process protein catabolic process|GO:0030163|11742986|TAS  go_process protein catabolic process|GO:0030163|9442033|TAS  go_process proteasomal ubiquitin-dependent protein catabolic process|GO:0043161|17971041|IMP  go_process proteasome assembly|GO:0043248|12671091|IMP  go_process proteasome assembly|GO:0043248|17971041|IMP  go_process leaf development|GO:0048366|12671091|IMP  go_process stamen formation|GO:0048455|12671091|IMP  go_process post-embryonic root development|GO:0048528|12671091|IMP  go_process root hair elongation|GO:0048767|12671091|IMP  go_process response to misfolded protein|GO:0051788|17971041|IMP  go_process proteasome core complex assembly|GO:0080129|17971041|IMP  go_function peptide receptor activity|GO:0001653|9442033|IDA  product RPN10 (REGULATORY PARTICLE NON-ATPASE 10); peptide receptor  note REGULATORY PARTICLE NON-ATPASE 10 (RPN10); FUNCTIONS IN: peptide receptor activity; INVOLVED IN: in 20 processes; LOCATED IN: cytosol, proteasome complex, proteasome regulatory particle, base subcomplex, nucleus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin interacting motif (InterPro:IPR003903), von Willebrand factor, type A (InterPro:IPR002035); Has 468 Blast hits to 458 proteins in 174 species: Archae - 0; Bacteria - 8; Metazoa - 181; Fungi - 99; Plants - 74; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).  protein_id AT4G38630.1p  transcript_id AT4G38630.1  protein_id AT4G38630.1p  transcript_id AT4G38630.1  
At4g38640	chr4:018061028	0.0	C/18061028-18062091,18060235-18060580,18059884-18060144	AT4G38640.1  CDS  gene_syn T9A14.3  product choline transporter-related  note choline transporter-related; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); Has 745 Blast hits to 741 proteins in 132 species: Archae - 2; Bacteria - 2; Metazoa - 386; Fungi - 134; Plants - 83; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).  protein_id AT4G38640.1p  transcript_id AT4G38640.1  protein_id AT4G38640.1p  transcript_id AT4G38640.1  
At4g38650	chr4:018063377	0.0	W/18063377-18063458,18063548-18063588,18063688-18063847,18063934-18064109,18064186-18064290,18064370-18064516,18064591-18065232,18065434-18065769	AT4G38650.1  CDS  gene_syn T9A14.8  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 10 protein  note glycosyl hydrolase family 10 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 10 protein (TAIR:AT4G38300.1); Has 1321 Blast hits to 1317 proteins in 272 species: Archae - 0; Bacteria - 657; Metazoa - 27; Fungi - 280; Plants - 168; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).  protein_id AT4G38650.1p  transcript_id AT4G38650.1  protein_id AT4G38650.1p  transcript_id AT4G38650.1  
At4g38660	chr4:018067113	0.0	C/18067113-18067792,18066448-18066739	AT4G38660.2  CDS  gene_syn T9A14.6  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process response to other organism|GO:0051707||ISS  go_function molecular_function|GO:0003674||ND  product thaumatin, putative  note thaumatin, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: anchored to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24180.1); Has 1093 Blast hits to 1078 proteins in 151 species: Archae - 0; Bacteria - 26; Metazoa - 54; Fungi - 57; Plants - 940; Viruses - 4; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT4G38660.2p  transcript_id AT4G38660.2  protein_id AT4G38660.2p  transcript_id AT4G38660.2  
At4g38660	chr4:018067909	0.0	C/18067909-18067984,18067113-18067782,18066448-18066739	AT4G38660.1  CDS  gene_syn T9A14.6  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process response to other organism|GO:0051707||ISS  go_function molecular_function|GO:0003674||ND  product thaumatin, putative  note thaumatin, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: anchored to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24180.1); Has 1098 Blast hits to 1079 proteins in 151 species: Archae - 0; Bacteria - 26; Metazoa - 54; Fungi - 57; Plants - 945; Viruses - 4; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT4G38660.1p  transcript_id AT4G38660.1  protein_id AT4G38660.1p  transcript_id AT4G38660.1  
At4g38670	chr4:018071173	0.0	C/18071173-18071227,18070376-18071072,18069856-18069946	AT4G38670.2  CDS  gene_syn T9A14.1  go_process response to other organism|GO:0051707||ISS  product pathogenesis-related thaumatin family protein  note pathogenesis-related thaumatin family protein; INVOLVED IN: response to other organism; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: pathogenesis-related thaumatin family protein (TAIR:AT4G36010.2); Has 1063 Blast hits to 1051 proteins in 144 species: Archae - 0; Bacteria - 24; Metazoa - 47; Fungi - 45; Plants - 937; Viruses - 2; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT4G38670.2p  transcript_id AT4G38670.2  protein_id AT4G38670.2p  transcript_id AT4G38670.2  
At4g38670	chr4:018071173	0.0	C/18071173-18071227,18070376-18071075,18069856-18069946	AT4G38670.1  CDS  gene_syn T9A14.1  go_process response to other organism|GO:0051707||ISS  product pathogenesis-related thaumatin family protein  note pathogenesis-related thaumatin family protein; INVOLVED IN: response to other organism; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: pathogenesis-related thaumatin family protein (TAIR:AT4G36010.2); Has 1062 Blast hits to 1050 proteins in 144 species: Archae - 0; Bacteria - 24; Metazoa - 47; Fungi - 45; Plants - 936; Viruses - 2; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT4G38670.1p  transcript_id AT4G38670.1  protein_id AT4G38670.1p  transcript_id AT4G38670.1  
At4g38670	chr4:018071173	0.0	C/18071173-18071227,18070376-18071075,18069856-18069946	AT4G38670.3  CDS  gene_syn T9A14.1  go_process response to other organism|GO:0051707||ISS  product pathogenesis-related thaumatin family protein  note pathogenesis-related thaumatin family protein; INVOLVED IN: response to other organism; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: pathogenesis-related thaumatin family protein (TAIR:AT4G36010.2); Has 1062 Blast hits to 1050 proteins in 144 species: Archae - 0; Bacteria - 24; Metazoa - 47; Fungi - 45; Plants - 936; Viruses - 2; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT4G38670.3p  transcript_id AT4G38670.3  protein_id AT4G38670.3p  transcript_id AT4G38670.3  
At4g38680	chr4:018072240	0.0	C/18072240-18072851	AT4G38680.1  CDS  gene_syn ARABIDOPSIS THALIANA COLD SHOCK PROTEIN 2, ATCSP2, COLD SHOCK DOMAIN PROTEIN 2, COLD SHOCK PROTEIN 2, CSDP2, CSP2, GLYCINE RICH PROTEIN 2, GRP-2, GRP2, T9A14.9  gene GRP2  function Encodes a glycine-rich protein that binds nucleic acids and promotes DNA melting. Its transcript and protein levels are up-regulated in response to cold treatment with protein levels peaking earlier in shoots (~10-14 days) than in roots (~21 days). It is normally expressed in meristematic regions and developing tissues where cell division occurs. RNAi and antisense lines with lower levels of CSP2/GRP2 transcripts flower earlier than wild type plants and have some defects in anther and seed development.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component nucleus|GO:0005634|17123099|IDA  go_component nucleolus|GO:0005730|17963727|IDA  go_component cytoplasm|GO:0005737|17123099|IDA  go_process response to cold|GO:0009409|17169986|IEP  go_process response to cold|GO:0009409|17963727|IEP  go_process vegetative to reproductive phase transition|GO:0010228|17123099|IMP  go_process DNA duplex unwinding|GO:0032508|17169986|IDA  go_process DNA duplex unwinding|GO:0032508|17963727|IDA  go_process seed development|GO:0048316|17123099|IMP  go_process stamen development|GO:0048443|17123099|IMP  go_function nucleic acid binding|GO:0003676|7827488|ISS  go_function nucleic acid binding|GO:0003676||ISS  go_function double-stranded DNA binding|GO:0003690|17963727|IDA  go_function single-stranded DNA binding|GO:0003697|17123099|IDA  go_function mRNA binding|GO:0003729|17963727|IDA  product GRP2 (GLYCINE RICH PROTEIN 2); double-stranded DNA binding / mRNA binding / nucleic acid binding / single-stranded DNA binding  note GLYCINE RICH PROTEIN 2 (GRP2); FUNCTIONS IN: double-stranded DNA binding, mRNA binding, single-stranded DNA binding, nucleic acid binding; INVOLVED IN: stamen development, response to cold, seed development, DNA duplex unwinding, vegetative to reproductive phase transition; LOCATED IN: nucleolus, nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 37 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Cold shock protein (InterPro:IPR011129), Zinc finger, CCHC-type (InterPro:IPR001878), Cold-shock protein, DNA-binding (InterPro:IPR002059); BEST Arabidopsis thaliana protein match is: ATGRP2B (GLYCINE-RICH PROTEIN 2B); DNA binding / nucleic acid binding / zinc ion binding (TAIR:AT2G21060.1); Has 133933 Blast hits to 44690 proteins in 2315 species: Archae - 262; Bacteria - 38923; Metazoa - 46944; Fungi - 8927; Plants - 12771; Viruses - 1546; Other Eukaryotes - 24560 (source: NCBI BLink).  protein_id AT4G38680.1p  transcript_id AT4G38680.1  protein_id AT4G38680.1p  transcript_id AT4G38680.1  
At4g38690	chr4:018074743	0.0	C/18074743-18075699	AT4G38690.1  CDS  gene_syn T9A14.2  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process lipid metabolic process|GO:0006629||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_function phospholipase C activity|GO:0004629||IEA  go_function phosphoric diester hydrolase activity|GO:0008081||IEA  go_component cellular_component|GO:0005575||ND  product 1-phosphatidylinositol phosphodiesterase-related  note 1-phosphatidylinositol phosphodiesterase-related; FUNCTIONS IN: phospholipase C activity, phosphoric diester hydrolase activity; INVOLVED IN: intracellular signaling cascade, N-terminal protein myristoylation, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific , X region (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946); BEST Arabidopsis thaliana protein match is: 1-phosphatidylinositol phosphodiesterase-related (TAIR:AT4G34920.1); Has 491 Blast hits to 491 proteins in 117 species: Archae - 0; Bacteria - 349; Metazoa - 45; Fungi - 48; Plants - 31; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT4G38690.1p  transcript_id AT4G38690.1  protein_id AT4G38690.1p  transcript_id AT4G38690.1  
At4g38700	chr4:018076583	0.0	C/18076583-18077155	AT4G38700.1  CDS  gene_syn T9A14.4  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_function molecular_function|GO:0003674||ND  product disease resistance-responsive family protein  note disease resistance-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: disease resistance-responsive family protein (TAIR:AT2G21110.1); Has 501 Blast hits to 500 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 501; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G38700.1p  transcript_id AT4G38700.1  protein_id AT4G38700.1p  transcript_id AT4G38700.1  
At4g38710	chr4:018078855	0.0	C/18078855-18080002,18078141-18078351	AT4G38710.1  CDS  gene_syn T9A14.5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function translation initiation factor activity|GO:0003743||ISS  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Plant specific eukaryotic initiation factor 4B (InterPro:IPR010433); BEST Arabidopsis thaliana protein match is: EIF4B1; translation initiation factor (TAIR:AT3G26400.1); Has 13881 Blast hits to 7241 proteins in 523 species: Archae - 38; Bacteria - 1004; Metazoa - 5553; Fungi - 1110; Plants - 508; Viruses - 195; Other Eukaryotes - 5473 (source: NCBI BLink).  protein_id AT4G38710.1p  transcript_id AT4G38710.1  protein_id AT4G38710.1p  transcript_id AT4G38710.1  
At4g38730	chr4:018082185	0.0	C/18082185-18082305,18081804-18081860,18081625-18081715,18081375-18081535,18081157-18081284,18080941-18081078,18080757-18080849,18080484-18080675	AT4G38730.1  CDS  gene_syn T9A14.10, T9A14_10  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF803 (InterPro:IPR008521); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G21120.1); Has 901 Blast hits to 883 proteins in 160 species: Archae - 0; Bacteria - 81; Metazoa - 388; Fungi - 229; Plants - 138; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT4G38730.1p  transcript_id AT4G38730.1  protein_id AT4G38730.1p  transcript_id AT4G38730.1  
At4g38740	chr4:018083620	0.0	C/18083620-18084138	AT4G38740.1  CDS  gene_syn CYCLOPHILIN, ROC1, ROTAMASE CYP 1, T9A14.20, T9A14_20  gene ROC1  function Encodes cytosolic cyclophilin ROC1.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytosol|GO:0005829|9426607|ISS  go_process protein folding|GO:0006457||ISS  go_process signal transduction|GO:0007165|9426607|ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755|9426607|ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product ROC1 (ROTAMASE CYP 1); peptidyl-prolyl cis-trans isomerase  note ROTAMASE CYP 1 (ROC1); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, response to cadmium ion, signal transduction; LOCATED IN: cytosol, apoplast, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Cyclophilin-like (InterPro:IPR015891); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP2) / rotamase (TAIR:AT2G21130.1); Has 11531 Blast hits to 11510 proteins in 1516 species: Archae - 82; Bacteria - 3670; Metazoa - 2409; Fungi - 961; Plants - 730; Viruses - 4; Other Eukaryotes - 3675 (source: NCBI BLink).  protein_id AT4G38740.1p  transcript_id AT4G38740.1  protein_id AT4G38740.1p  transcript_id AT4G38740.1  
At4g38750	chr4:018090712	0.0	C/18090712-18090846,18090461-18090604,18089703-18089810,18089184-18089347,18088598-18089073,18087561-18087886,18085579-18087156,18085255-18085462,18085033-18085115	AT4G38750.1  CDS  gene_syn T9A14.30, T9A14_30  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 25 Blast hits to 12 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G38750.1p  transcript_id AT4G38750.1  protein_id AT4G38750.1p  transcript_id AT4G38750.1  
At4g38760	chr4:018096059	0.0	C/18096059-18096166,18095787-18095960,18095427-18095534,18094848-18094917,18094539-18094663,18094252-18094392,18094008-18094165,18093697-18093865,18093516-18093614,18093263-18093340,18093121-18093180,18092878-18093035,18092488-18092689,18092266-18092385,18091987-18092072,18091802-18091910	AT4G38760.1  CDS  gene_syn T9A14.40, T9A14_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot, sperm cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10845.1); Has 54 Blast hits to 54 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G38760.1p  transcript_id AT4G38760.1  protein_id AT4G38760.1p  transcript_id AT4G38760.1  
At4g38770	chr4:018098301	0.0	C/18098301-18098448,18097009-18098207	AT4G38770.1  CDS  gene_syn ARABIDOPSIS THALIANA PROLINE-RICH PROTEIN 4, ATPRP4, PROLINE-RICH PROTEIN 4, PRP4, T9A14.50, T9A14_50  gene PRP4  function Encodes one of four proline-rich proteins in Arabidopsis which are predicted to localize to the cell wall. Transcripts are most abundant in aerial organs of the plant.  go_component cell wall|GO:0005618|10594096|ISS  product PRP4 (PROLINE-RICH PROTEIN 4)  note PROLINE-RICH PROTEIN 4 (PRP4); LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1210 (InterPro:IPR010616); BEST Arabidopsis thaliana protein match is: ATPRP2 (PROLINE-RICH PROTEIN 2) (TAIR:AT2G21140.1); Has 123527 Blast hits to 35923 proteins in 1594 species: Archae - 445; Bacteria - 25749; Metazoa - 47395; Fungi - 12637; Plants - 16049; Viruses - 3791; Other Eukaryotes - 17461 (source: NCBI BLink).  protein_id AT4G38770.1p  transcript_id AT4G38770.1  protein_id AT4G38770.1p  transcript_id AT4G38770.1  
At4g38780	chr4:018110833	0.0	C/18110833-18111029,18110501-18110624,18110326-18110418,18109843-18110233,18109250-18109742,18108364-18109154,18107996-18108264,18107527-18107841,18107122-18107426,18106581-18107035,18106380-18106506,18106020-18106261,18105800-18105923,18105410-18105707,18104891-18105144,18104148-18104764,18103964-18104070,18103623-18103877,18103034-18103507,18102693-18102854,18102394-18102591,18102043-18102321,18101728-18101970,18101438-18101623	AT4G38780.1  CDS  gene_syn T9A14.60, T9A14_60  go_component spliceosome|GO:0005681||IEA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398||IEA  go_function molecular_function|GO:0003674||ND  product splicing factor, putative  note splicing factor, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: spliceosome; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555), Pre-mRNA-processing-splicing factor 8 (InterPro:IPR012591), PRO, C-terminal (InterPro:IPR012984), PROCN (InterPro:IPR012592); BEST Arabidopsis thaliana protein match is: SUS2 (ABNORMAL SUSPENSOR 2) (TAIR:AT1G80070.1); Has 520 Blast hits to 458 proteins in 186 species: Archae - 0; Bacteria - 2; Metazoa - 194; Fungi - 143; Plants - 29; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).  protein_id AT4G38780.1p  transcript_id AT4G38780.1  protein_id AT4G38780.1p  transcript_id AT4G38780.1  
At4g38781	chr4:018111041	0.0	C/18111041-18111193	AT4G38781.1  CDS  go_component mitochondrion|GO:0005739||IEA  product unknown protein  note unknown protein; LOCATED IN: mitochondrion; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G38781.1p  transcript_id AT4G38781.1  protein_id AT4G38781.1p  transcript_id AT4G38781.1  
At4g38790	chr4:018111426	0.0	W/18111426-18111651,18112017-18112216,18112294-18112434,18112513-18112593,18112721-18112845,18112929-18112977	AT4G38790.1  CDS  gene_syn T9A14.70, T9A14_70  go_component integral to membrane|GO:0016021||IEA  go_process protein retention in ER lumen|GO:0006621||IEA  go_function ER retention sequence binding|GO:0046923||IEA  go_component integral to membrane|GO:0016021||ISS  go_process protein transport|GO:0015031||ISS  go_function receptor activity|GO:0004872||ISS  product ER lumen protein retaining receptor family protein  note ER lumen protein retaining receptor family protein; FUNCTIONS IN: ER retention sequence binding, receptor activity; INVOLVED IN: protein retention in ER lumen, protein transport; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: ER lumen protein retaining receptor (InterPro:IPR000133); BEST Arabidopsis thaliana protein match is: ER lumen protein retaining receptor family protein (TAIR:AT2G21190.1); Has 626 Blast hits to 626 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 265; Fungi - 114; Plants - 120; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).  protein_id AT4G38790.1p  transcript_id AT4G38790.1  protein_id AT4G38790.1p  transcript_id AT4G38790.1  
At4g38800	chr4:018114897	0.0	C/18114897-18114996,18114745-18114808,18114570-18114661,18114304-18114410,18113987-18114061,18113809-18113883,18113645-18113737,18113355-18113552	AT4G38800.1  CDS  gene_syn ATMTN1, T9A14.80, T9A14_80  gene ATMTN1  go_component plasma membrane|GO:0005886|17644812|IDA  go_process nucleoside metabolic process|GO:0009116||IEA  go_process nucleoside metabolic process|GO:0009116||ISS  go_function catalytic activity|GO:0003824||ISS  go_function methylthioadenosine nucleosidase activity|GO:0008930|17144895|NAS  product ATMTN1; catalytic/ methylthioadenosine nucleosidase  note ATMTN1; FUNCTIONS IN: methylthioadenosine nucleosidase activity, catalytic activity; INVOLVED IN: nucleoside metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside phosphorylase (InterPro:IPR000845), Nucleoside phosphorylase, family 1 (InterPro:IPR018017); BEST Arabidopsis thaliana protein match is: ATMTN2; methylthioadenosine nucleosidase (TAIR:AT4G34840.1); Has 1331 Blast hits to 1331 proteins in 597 species: Archae - 0; Bacteria - 1240; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT4G38800.1p  transcript_id AT4G38800.1  protein_id AT4G38800.1p  transcript_id AT4G38800.1  
At4g38810	chr4:018116784	0.0	C/18116784-18116999,18116252-18116476,18116021-18116149,18115607-18115834	AT4G38810.1  CDS  gene_syn T9A14.90, T9A14_90  go_component cellular_component|GO:0005575||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT5G28830.1); Has 129 Blast hits to 74 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G38810.1p  transcript_id AT4G38810.1  protein_id AT4G38810.1p  transcript_id AT4G38810.1  
At4g38810	chr4:018118615	0.0	C/18118615-18118860,18116784-18117083,18116252-18116476,18116021-18116149,18115607-18115834	AT4G38810.2  CDS  gene_syn T9A14.90, T9A14_90  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT5G28830.1); Has 189 Blast hits to 127 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 186; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G38810.2p  transcript_id AT4G38810.2  protein_id AT4G38810.2p  transcript_id AT4G38810.2  
At4g38825	chr4:018121612	0.0	W/18121612-18121881	AT4G38825.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT5G18030.1); Has 584 Blast hits to 581 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 583; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G38825.1p  transcript_id AT4G38825.1  protein_id AT4G38825.1p  transcript_id AT4G38825.1  
At4g38820	chr4:018121631	0.0	C/18121631-18121852	AT4G38820.1  CDS  gene_syn T9A14.100, T9A14_100  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G38820.1p  transcript_id AT4G38820.1  protein_id AT4G38820.1p  transcript_id AT4G38820.1  
At4g38830	chr4:018122339	0.0	W/18122339-18123158,18123294-18123437,18123599-18123714,18123787-18123997,18124083-18124323,18124396-18124546,18124629-18124943	AT4G38830.1  CDS  gene_syn T9A14.110, T9A14_110  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G21410.1); Has 89734 Blast hits to 88617 proteins in 3182 species: Archae - 49; Bacteria - 7747; Metazoa - 38997; Fungi - 7320; Plants - 19858; Viruses - 404; Other Eukaryotes - 15359 (source: NCBI BLink).  protein_id AT4G38830.1p  transcript_id AT4G38830.1  protein_id AT4G38830.1p  transcript_id AT4G38830.1  
At4g38840	chr4:018125174	0.0	C/18125174-18125473	AT4G38840.1  CDS  gene_syn F19H22.7  go_component plasma membrane|GO:0005886|15060130|IDA  go_process response to cold|GO:0009409|16214899|IEP  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive protein, putative  note auxin-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus, response to cold; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT2G21210.1); Has 674 Blast hits to 664 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 673; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G38840.1p  transcript_id AT4G38840.1  protein_id AT4G38840.1p  transcript_id AT4G38840.1  
At4g38850	chr4:018126257	0.0	W/18126257-18126526	AT4G38850.1  CDS  gene_syn ARABIDOPSIS COLUMBIA SAUR GENE 1, ARABIDOPSIS THALIANA SMALL AUXIN UPREGULATED 15, ATSAUR15, F19H22.6, SAUR-AC1, SAUR15, SAUR_AC1, SMALL AUXIN UP RNA 1 FROM ARABIDOPSIS THALIANA ECOTYPE COLUMBIA, SMALL AUXIN UPREGULATED 15  gene SAUR15  function mRNA is rapidly induced by auxin and is very short-lived. Has been used as a reporter gene in studying auxin mutants.  go_process response to auxin stimulus|GO:0009733|8159792|IEP  go_process response to auxin stimulus|GO:0009733||ISS  go_process response to brassinosteroid stimulus|GO:0009741|16367964|TAS  go_function molecular_function|GO:0003674||ND  product SAUR15 (SMALL AUXIN UPREGULATED 15)  note SMALL AUXIN UPREGULATED 15 (SAUR15); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus, response to brassinosteroid stimulus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT5G18080.1); Has 625 Blast hits to 620 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 624; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G38850.1p  transcript_id AT4G38850.1  protein_id AT4G38850.1p  transcript_id AT4G38850.1  
At4g38860	chr4:018130357	0.0	W/18130357-18130674	AT4G38860.1  CDS  gene_syn F19H22.1  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive protein, putative  note auxin-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT2G21220.1); Has 642 Blast hits to 633 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 641; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G38860.1p  transcript_id AT4G38860.1  protein_id AT4G38860.1p  transcript_id AT4G38860.1  
At4g38870	chr4:018132583	0.0	C/18132583-18133863	AT4G38870.1  CDS  gene_syn F19H22.2  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G21930.1); Has 968 Blast hits to 945 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 968; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G38870.1p  transcript_id AT4G38870.1  protein_id AT4G38870.1p  transcript_id AT4G38870.1  
At4g38880	chr4:018134116	0.0	W/18134116-18135714	AT4G38880.1  CDS  gene_syn ATASE3, F19H22.3, GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 3  gene ATASE3  function GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 2  go_component chloroplast|GO:0009507||IEA  go_process metabolic process|GO:0008152||IEA  go_process purine base biosynthetic process|GO:0009113||IEA  go_process nucleoside metabolic process|GO:0009116||IEA  go_function amidophosphoribosyltransferase activity|GO:0004044||IEA  go_process purine base biosynthetic process|GO:0009113||ISS  go_function amidophosphoribosyltransferase activity|GO:0004044||ISS  product ATASE3 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 3); amidophosphoribosyltransferase  note GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 3 (ATASE3); FUNCTIONS IN: amidophosphoribosyltransferase activity; INVOLVED IN: purine base biosynthetic process, nucleoside metabolic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase, class-II (InterPro:IPR000583), Phosphoribosyltransferase (InterPro:IPR000836), Amidophosphoribosyl transferase (InterPro:IPR005854), Glutamine amidotransferase, type II (InterPro:IPR017932); BEST Arabidopsis thaliana protein match is: ATASE2 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 2); amidophosphoribosyltransferase (TAIR:AT4G34740.1); Has 15092 Blast hits to 15088 proteins in 1646 species: Archae - 367; Bacteria - 6631; Metazoa - 368; Fungi - 251; Plants - 122; Viruses - 18; Other Eukaryotes - 7335 (source: NCBI BLink).  protein_id AT4G38880.1p  transcript_id AT4G38880.1  protein_id AT4G38880.1p  transcript_id AT4G38880.1  
At4g38890	chr4:018138795	0.0	C/18138795-18139100,18138564-18138674,18138180-18138407,18137786-18138032,18137324-18137589,18136957-18137229,18136556-18136837,18136357-18136477,18136092-18136261,18135909-18136007	AT4G38890.1  CDS  gene_syn F19H22.4  go_component vacuole|GO:0005773|14760709|IDA  go_process tRNA processing|GO:0008033||IEA  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function tRNA dihydrouridine synthase activity|GO:0017150||IEA  go_function FAD binding|GO:0050660||IEA  product dihydrouridine synthase family protein  note dihydrouridine synthase family protein; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity; INVOLVED IN: oxidation reduction, tRNA processing, metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269), tRNA-dihydrouridine synthase, conserved site (InterPro:IPR018517); BEST Arabidopsis thaliana protein match is: FAD binding / catalytic/ tRNA dihydrouridine synthase (TAIR:AT3G49640.1); Has 7322 Blast hits to 7247 proteins in 1396 species: Archae - 11; Bacteria - 4174; Metazoa - 431; Fungi - 362; Plants - 91; Viruses - 0; Other Eukaryotes - 2253 (source: NCBI BLink).  protein_id AT4G38890.1p  transcript_id AT4G38890.1  protein_id AT4G38890.1p  transcript_id AT4G38890.1  
At4g38900	chr4:018140322	0.0	C/18140322-18141520,18140110-18140242,18139941-18140025,18139564-18139790	AT4G38900.2  CDS  gene_syn F19H22.5  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  product bZIP protein  note bZIP protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: bZIP family transcription factor (TAIR:AT2G21230.1); Has 3065 Blast hits to 2187 proteins in 243 species: Archae - 8; Bacteria - 190; Metazoa - 623; Fungi - 196; Plants - 813; Viruses - 1; Other Eukaryotes - 1234 (source: NCBI BLink).  protein_id AT4G38900.2p  transcript_id AT4G38900.2  protein_id AT4G38900.2p  transcript_id AT4G38900.2  
At4g38900	chr4:018140322	0.0	C/18140322-18141520,18140110-18140242,18139941-18140025,18139564-18139790	AT4G38900.3  CDS  gene_syn F19H22.5  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  product bZIP protein  note bZIP protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: bZIP family transcription factor (TAIR:AT2G21230.1); Has 3065 Blast hits to 2187 proteins in 243 species: Archae - 8; Bacteria - 190; Metazoa - 623; Fungi - 196; Plants - 813; Viruses - 1; Other Eukaryotes - 1234 (source: NCBI BLink).  protein_id AT4G38900.3p  transcript_id AT4G38900.3  protein_id AT4G38900.3p  transcript_id AT4G38900.3  
At4g38900	chr4:018140322	0.0	C/18140322-18141520,18140110-18140260,18139941-18140025,18139564-18139790	AT4G38900.1  CDS  gene_syn F19H22.5  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  product bZIP protein  note bZIP protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: bZIP family transcription factor (TAIR:AT2G21230.1); Has 2564 Blast hits to 1712 proteins in 206 species: Archae - 2; Bacteria - 173; Metazoa - 566; Fungi - 142; Plants - 557; Viruses - 0; Other Eukaryotes - 1124 (source: NCBI BLink).  protein_id AT4G38900.1p  transcript_id AT4G38900.1  protein_id AT4G38900.1p  transcript_id AT4G38900.1  
At4g38910	chr4:018145478	0.0	C/18145478-18146254	AT4G38910.1  CDS  gene_syn ATBPC5, BASIC PENTACYSTEINE 5, BBR/BPC5, BPC5, F19H22.10, F19H22_10  gene BPC5  function The current TAIR8 structure of this gene is incorrect. The corrected structure, which will be visible in TAIR9, indicates that this gene could possibly be a pseudogene.  go_component nucleus|GO:0005634|14731261|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|14731261|IPI  go_function DNA binding|GO:0003677|14731261|IPI  go_function transcription factor activity|GO:0003700|14731261|IPI  product BPC5 (BASIC PENTACYSTEINE 5); DNA binding / transcription factor  note BASIC PENTACYSTEINE 5 (BPC5); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: BPC4 (BASIC PENTACYSTEINE 4); DNA binding / transcription factor (TAIR:AT2G21240.2); Has 157 Blast hits to 153 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 142; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G38910.1p  transcript_id AT4G38910.1  protein_id AT4G38910.1p  transcript_id AT4G38910.1  
At4g38920	chr4:018147330	0.0	W/18147330-18147405,18148098-18148383,18148721-18148853	AT4G38920.1  CDS  gene_syn ATVHA-C3, AVA-P3, F19H22.20, VACUOLAR-TYPE H(+)-ATPASE C3  gene ATVHA-C3  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_function ATPase activity|GO:0016887||ISS  product ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3); ATPase  note VACUOLAR-TYPE H(+)-ATPASE C3 (ATVHA-C3); FUNCTIONS IN: ATPase activity; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F0/V0 complex, subunit C (InterPro:IPR002379), ATPase, V0 complex, proteolipid subunit C, eukaryotic (InterPro:IPR011555), ATPase, V0 complex, proteolipid subunit C (InterPro:IPR000245); BEST Arabidopsis thaliana protein match is: AVA-P1; ATPase/ proton-transporting ATPase, rotational mechanism (TAIR:AT4G34720.1); Has 1818 Blast hits to 1637 proteins in 400 species: Archae - 127; Bacteria - 312; Metazoa - 519; Fungi - 315; Plants - 225; Viruses - 0; Other Eukaryotes - 320 (source: NCBI BLink).  protein_id AT4G38920.1p  transcript_id AT4G38920.1  protein_id AT4G38920.1p  transcript_id AT4G38920.1  
At4g38930	chr4:018149907	0.0	W/18149907-18149909,18149993-18150070,18150195-18150219,18150320-18150352,18150444-18150565,18150648-18150778,18150893-18151101,18151189-18151427,18151521-18151616	AT4G38930.1  CDS  gene_syn F19H22.30, F19H22_30  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_function molecular_function|GO:0003674||ND  product ubiquitin fusion degradation UFD1 family protein  note ubiquitin fusion degradation UFD1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin fusion degradation protein UFD1 (InterPro:IPR004854); BEST Arabidopsis thaliana protein match is: ubiquitin fusion degradation UFD1 family protein (TAIR:AT2G21270.3); Has 485 Blast hits to 485 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 135; Plants - 71; Viruses - 0; Other Eukaryotes - 153 (source: NCBI BLink).  protein_id AT4G38930.1p  transcript_id AT4G38930.1  protein_id AT4G38930.1p  transcript_id AT4G38930.1  
At4g38930	chr4:018149907	0.0	W/18149907-18149909,18149993-18150070,18150195-18150219,18150320-18150352,18150444-18150565,18150648-18150778,18150893-18151113,18151189-18151427,18151521-18151616	AT4G38930.2  CDS  gene_syn F19H22.30, F19H22_30  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_function molecular_function|GO:0003674||ND  product ubiquitin fusion degradation UFD1 family protein  note ubiquitin fusion degradation UFD1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin fusion degradation protein UFD1 (InterPro:IPR004854); BEST Arabidopsis thaliana protein match is: ubiquitin fusion degradation UFD1 family protein (TAIR:AT2G21270.3); Has 484 Blast hits to 484 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 135; Plants - 71; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).  protein_id AT4G38930.2p  transcript_id AT4G38930.2  protein_id AT4G38930.2p  transcript_id AT4G38930.2  
At4g38940	chr4:018152848	0.0	W/18152848-18153960	AT4G38940.1  CDS  gene_syn F19H22.40, F19H22_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT3G10510.1); Has 722 Blast hits to 701 proteins in 54 species: Archae - 4; Bacteria - 27; Metazoa - 128; Fungi - 0; Plants - 558; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G38940.1p  transcript_id AT4G38940.1  protein_id AT4G38940.1p  transcript_id AT4G38940.1  
At4g38950	chr4:018158275	0.0	C/18158275-18158461,18157960-18158049,18157774-18157874,18157568-18157681,18157399-18157480,18157186-18157253,18157037-18157102,18156788-18156912,18156352-18156691,18156152-18156250,18155376-18156008,18155023-18155300,18154606-18154933	AT4G38950.1  CDS  gene_syn F19H22.50, F19H22_50  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_process microtubule-based process|GO:0007017||ISS  go_function microtubule motor activity|GO:0003777||ISS  product kinesin motor family protein  note kinesin motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based process, microtubule-based movement; LOCATED IN: microtubule associated complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin motor family protein (TAIR:AT2G21300.2); Has 7464 Blast hits to 7136 proteins in 234 species: Archae - 0; Bacteria - 0; Metazoa - 3816; Fungi - 875; Plants - 897; Viruses - 0; Other Eukaryotes - 1876 (source: NCBI BLink).  protein_id AT4G38950.1p  transcript_id AT4G38950.1  protein_id AT4G38950.1p  transcript_id AT4G38950.1  
At4g38950	chr4:018158275	0.0	C/18158275-18158461,18157960-18158049,18157774-18157874,18157568-18157681,18157399-18157480,18157186-18157253,18157037-18157102,18156788-18156912,18156352-18156691,18156152-18156250,18155376-18156008,18155023-18155300,18154606-18154933	AT4G38950.2  CDS  gene_syn F19H22.50, F19H22_50  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_process microtubule-based process|GO:0007017||ISS  go_function microtubule motor activity|GO:0003777||ISS  product kinesin motor family protein  note kinesin motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based process, microtubule-based movement; LOCATED IN: microtubule associated complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin motor family protein (TAIR:AT2G21300.2); Has 7464 Blast hits to 7136 proteins in 234 species: Archae - 0; Bacteria - 0; Metazoa - 3816; Fungi - 875; Plants - 897; Viruses - 0; Other Eukaryotes - 1876 (source: NCBI BLink).  protein_id AT4G38950.2p  transcript_id AT4G38950.2  protein_id AT4G38950.2p  transcript_id AT4G38950.2  
At4g38960	chr4:018161576	0.0	W/18161576-18161668,18162294-18162390,18162507-18162622,18162723-18162884,18162962-18163045	AT4G38960.1  CDS  gene_syn F19H22.60, F19H22_60  go_component intracellular|GO:0005622||IEA  go_component endomembrane system|GO:0012505||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (B-box type) family protein  note zinc finger (B-box type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: zinc finger (B-box type) family protein (TAIR:AT2G21320.1); Has 1287 Blast hits to 903 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 0; Plants - 1192; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT4G38960.1p  transcript_id AT4G38960.1  protein_id AT4G38960.1p  transcript_id AT4G38960.1  
At4g38960	chr4:018162300	0.0	W/18162300-18162390,18162507-18162622,18162723-18162884,18162962-18163045	AT4G38960.2  CDS  gene_syn F19H22.60, F19H22_60  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (B-box type) family protein  note zinc finger (B-box type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: zinc finger (B-box type) family protein (TAIR:AT2G21320.1); Has 601 Blast hits to 580 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 584; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT4G38960.2p  transcript_id AT4G38960.2  protein_id AT4G38960.2p  transcript_id AT4G38960.2  
At4g38970	chr4:018165483	0.0	C/18165483-18165659,18164951-18165220,18164749-18164858,18164558-18164648,18164339-18164477,18164127-18164261,18163769-18163992	AT4G38970.2  CDS  gene_syn F19H22.70, F19H22_70  function Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function catalytic activity|GO:0003824||IEA  go_function fructose-bisphosphate aldolase activity|GO:0004332||IEA  go_component chloroplast stroma|GO:0009570|16414959|IDA  go_component plastoglobule|GO:0010287|16461379|IDA  go_process pentose-phosphate shunt|GO:0006098||TAS  go_process response to abscisic acid stimulus|GO:0009737|18768909|IEP  product fructose-bisphosphate aldolase, putative  note fructose-bisphosphate aldolase, putative; FUNCTIONS IN: fructose-bisphosphate aldolase activity, catalytic activity; INVOLVED IN: response to cadmium ion, pentose-phosphate shunt, response to abscisic acid stimulus; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741); BEST Arabidopsis thaliana protein match is: fructose-bisphosphate aldolase, putative (TAIR:AT2G21330.2); Has 3920 Blast hits to 3920 proteins in 669 species: Archae - 0; Bacteria - 436; Metazoa - 993; Fungi - 2; Plants - 332; Viruses - 0; Other Eukaryotes - 2157 (source: NCBI BLink).  protein_id AT4G38970.2p  transcript_id AT4G38970.2  protein_id AT4G38970.2p  transcript_id AT4G38970.2  
At4g38970	chr4:018165483	0.0	C/18165483-18165659,18164951-18165220,18164749-18164858,18164558-18164648,18164339-18164477,18164131-18164261,18163714-18163992	AT4G38970.1  CDS  gene_syn F19H22.70, F19H22_70  function Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function catalytic activity|GO:0003824||IEA  go_function fructose-bisphosphate aldolase activity|GO:0004332||IEA  go_component chloroplast stroma|GO:0009570|16414959|IDA  go_component plastoglobule|GO:0010287|16461379|IDA  go_process pentose-phosphate shunt|GO:0006098||TAS  go_process response to abscisic acid stimulus|GO:0009737|18768909|IEP  product fructose-bisphosphate aldolase, putative  note fructose-bisphosphate aldolase, putative; FUNCTIONS IN: fructose-bisphosphate aldolase activity, catalytic activity; INVOLVED IN: response to cadmium ion, pentose-phosphate shunt, response to abscisic acid stimulus; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741); BEST Arabidopsis thaliana protein match is: fructose-bisphosphate aldolase, putative (TAIR:AT2G21330.1); Has 4195 Blast hits to 4191 proteins in 673 species: Archae - 0; Bacteria - 436; Metazoa - 1011; Fungi - 2; Plants - 339; Viruses - 0; Other Eukaryotes - 2407 (source: NCBI BLink).  protein_id AT4G38970.1p  transcript_id AT4G38970.1  protein_id AT4G38970.1p  transcript_id AT4G38970.1  
At4g38980	chr4:018166898	0.0	C/18166898-18167740	AT4G38980.1  CDS  gene_syn F19H22.80, F19H22_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 6; Plants - 11; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT4G38980.1p  transcript_id AT4G38980.1  protein_id AT4G38980.1p  transcript_id AT4G38980.1  
At4g38990	chr4:018170545	0.0	C/18170545-18170949,18170000-18170208,18169909-18169924,18169647-18169808,18169175-18169426	AT4G38990.1  CDS  gene_syn Arabidopsis thaliana glycosyl hydrolase 9B16, AtGH9B16, F19H22.90, F19H22_90  gene AtGH9B16  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  product AtGH9B16 (Arabidopsis thaliana glycosyl hydrolase 9B16); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds  note Arabidopsis thaliana glycosyl hydrolase 9B16 (AtGH9B16); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: AtGH9B17 (Arabidopsis thaliana glycosyl hydrolase 9B17); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT4G39000.1).  protein_id AT4G38990.1p  transcript_id AT4G38990.1  protein_id AT4G38990.1p  transcript_id AT4G38990.1  
At4g39000	chr4:018173387	0.0	C/18173387-18173797,18172750-18173049,18172500-18172661,18172147-18172422,18171722-18172054	AT4G39000.1  CDS  gene_syn Arabidopsis thaliana glycosyl hydrolase 9B17, AtGH9B17, F19H22.100, F19H22_100  gene AtGH9B17  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product AtGH9B17 (Arabidopsis thaliana glycosyl hydrolase 9B17); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds  note Arabidopsis thaliana glycosyl hydrolase 9B17 (AtGH9B17); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: AtGH9B18 (Arabidopsis thaliana glycosyl hydrolase 9B18); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT4G39010.1); Has 1112 Blast hits to 1108 proteins in 183 species: Archae - 0; Bacteria - 313; Metazoa - 138; Fungi - 14; Plants - 621; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT4G39000.1p  transcript_id AT4G39000.1  protein_id AT4G39000.1p  transcript_id AT4G39000.1  
At4g39010	chr4:018178680	0.0	C/18178680-18179102,18177428-18177727,18177096-18177257,18176599-18176874,18176162-18176494	AT4G39010.1  CDS  gene_syn Arabidopsis thaliana glycosyl hydrolase 9B18, AtGH9B18, F19H22.110, F19H22_110  gene AtGH9B18  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product AtGH9B18 (Arabidopsis thaliana glycosyl hydrolase 9B18); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds  note Arabidopsis thaliana glycosyl hydrolase 9B18 (AtGH9B18); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: AtGH9B17 (Arabidopsis thaliana glycosyl hydrolase 9B17); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT4G39000.1); Has 1125 Blast hits to 1119 proteins in 188 species: Archae - 0; Bacteria - 336; Metazoa - 124; Fungi - 14; Plants - 622; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT4G39010.1p  transcript_id AT4G39010.1  protein_id AT4G39010.1p  transcript_id AT4G39010.1  
At4g39020	chr4:018182315	0.0	W/18182315-18182435,18182624-18182746,18183860-18183933,18184016-18184090,18184224-18184340	AT4G39020.1  CDS  gene_syn F19H22.120, F19H22_120  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SH3 domain-containing protein  note SH3 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Neutrophil cytosol factor 2 (InterPro:IPR000108), Src homology-3 domain (InterPro:IPR001452); BEST Arabidopsis thaliana protein match is: SH3 domain-containing protein 2 (SH3P2) (TAIR:AT4G34660.1); Has 138 Blast hits to 138 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 2; Plants - 81; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT4G39020.1p  transcript_id AT4G39020.1  protein_id AT4G39020.1p  transcript_id AT4G39020.1  
At4g39030	chr4:018185740	0.0	W/18185740-18186154,18186745-18186839,18186924-18187032,18187124-18187179,18187264-18187319,18187422-18187560,18187655-18187861,18187936-18188175,18188262-18188339,18188466-18188537,18188643-18188705,18188797-18188898	AT4G39030.1  CDS  gene_syn EDS5, ENHANCED DISEASE SUSCEPTIBILITY 5, F19H22.130, F19H22_130, SALICYLIC ACID INDUCTION DEFICIENT 1, SID1  gene EDS5  function Encodes an orphan multidrug and toxin extrusion transporter. Essential component of salicylic acid-dependent signaling for disease resistance. Member of the MATE-transporter family. Expression induced by salicylic acid. Mutants are salicylic acid-deficient.  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_component membrane|GO:0016020||ISS  go_process defense response|GO:0006952|11826312|TAS  go_process response to nematode|GO:0009624|16478044|IEP  go_process salicylic acid biosynthetic process|GO:0009697|10449575|IMP  go_process negative regulation of defense response|GO:0031348|16732289|IMP  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  go_function multidrug efflux pump activity|GO:0015559|11826312|ISS  product EDS5 (ENHANCED DISEASE SUSCEPTIBILITY 5); antiporter/ multidrug efflux pump/ transporter  note ENHANCED DISEASE SUSCEPTIBILITY 5 (EDS5); FUNCTIONS IN: antiporter activity, transporter activity, multidrug efflux pump activity; INVOLVED IN: salicylic acid biosynthetic process, negative regulation of defense response, response to nematode, defense response; LOCATED IN: mitochondrion, plastid, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: antiporter/ drug transporter (TAIR:AT2G21340.1); Has 4213 Blast hits to 4205 proteins in 871 species: Archae - 114; Bacteria - 3172; Metazoa - 45; Fungi - 16; Plants - 219; Viruses - 0; Other Eukaryotes - 647 (source: NCBI BLink).  protein_id AT4G39030.1p  transcript_id AT4G39030.1  protein_id AT4G39030.1p  transcript_id AT4G39030.1  
At4g39040	chr4:018189933	0.0	C/18189933-18190535,18189398-18189616,18189249-18189317	AT4G39040.1  CDS  gene_syn F19H22.140, F19H22_140  go_component chloroplast|GO:0009507|18431481|IDA  go_function RNA binding|GO:0003723||IEA  go_process biological_process|GO:0008150||ND  product RNA binding  note RNA binding; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA binding (TAIR:AT2G21350.1); Has 8912 Blast hits to 4508 proteins in 787 species: Archae - 31; Bacteria - 1206; Metazoa - 4837; Fungi - 437; Plants - 259; Viruses - 205; Other Eukaryotes - 1937 (source: NCBI BLink).  protein_id AT4G39040.1p  transcript_id AT4G39040.1  protein_id AT4G39040.1p  transcript_id AT4G39040.1  
At4g39040	chr4:018189933	0.0	C/18189933-18190535,18189398-18189616,18189292-18189312	AT4G39040.2  CDS  gene_syn F19H22.140, F19H22_140  go_component chloroplast|GO:0009507|18431481|IDA  go_function RNA binding|GO:0003723||IEA  go_process biological_process|GO:0008150||ND  product RNA binding  note RNA binding; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA binding (TAIR:AT2G21350.1); Has 8873 Blast hits to 4476 proteins in 786 species: Archae - 31; Bacteria - 1206; Metazoa - 4830; Fungi - 433; Plants - 256; Viruses - 206; Other Eukaryotes - 1911 (source: NCBI BLink).  protein_id AT4G39040.2p  transcript_id AT4G39040.2  protein_id AT4G39040.2p  transcript_id AT4G39040.2  
At4g39050	chr4:018193462	0.0	W/18193462-18193787,18193916-18194013,18194096-18194185,18194320-18194372,18194747-18194812,18194910-18194963,18195186-18195245,18195415-18195493,18195588-18195655,18195798-18195854,18195936-18196040,18196433-18196537,18196754-18196861,18196971-18197102,18197192-18197374,18197676-18197825,18197906-18198043,18198125-18198244,18198362-18198412,18198527-18198574,18198715-18198864,18199034-18199744,18199839-18199968,18200063-18200148	AT4G39050.1  CDS  gene_syn F19H22.150, F19H22_150  go_component microtubule associated complex|GO:0005875||IEA  go_component chloroplast|GO:0009507||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function microtubule motor activity|GO:0003777||ISS  product kinesin-related protein (MKRP2)  note kinesin-related protein (MKRP2); FUNCTIONS IN: protein binding, microtubule motor activity, zinc ion binding, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex, chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin motor protein-related (TAIR:AT2G21380.1); Has 37077 Blast hits to 25676 proteins in 1021 species: Archae - 260; Bacteria - 2097; Metazoa - 19200; Fungi - 3004; Plants - 2225; Viruses - 313; Other Eukaryotes - 9978 (source: NCBI BLink).  protein_id AT4G39050.1p  transcript_id AT4G39050.1  protein_id AT4G39050.1p  transcript_id AT4G39050.1  
At4g39060	chr4:018202607	0.0	W/18202607-18202609,18203372-18203654,18203744-18203889,18203960-18204634	AT4G39060.1  CDS  gene_syn F19H22.160, F19H22_160  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: kelch repeat-containing protein (TAIR:AT4G19250.1); Has 303 Blast hits to 287 proteins in 5 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 295; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT4G39060.1p  transcript_id AT4G39060.1  protein_id AT4G39060.1p  transcript_id AT4G39060.1  
At4g39070	chr4:018206236	0.0	C/18206236-18206421,18205061-18205603	AT4G39070.1  CDS  gene_syn F19H22.170, F19H22_170  go_component intracellular|GO:0005622||IEA  go_process response to chitin|GO:0010200|17722694|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (B-box type) family protein  note zinc finger (B-box type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding; INVOLVED IN: response to chitin, regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: STH2 (SALT TOLERANCE HOMOLOG2); transcription factor/ zinc ion binding (TAIR:AT1G75540.1); Has 1235 Blast hits to 854 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 1150; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT4G39070.1p  transcript_id AT4G39070.1  protein_id AT4G39070.1p  transcript_id AT4G39070.1  
At4g39080	chr4:018209513	0.0	W/18209513-18209665,18210015-18210059,18210186-18210308,18210397-18210504,18210784-18210891,18210979-18211152,18211463-18211600,18211948-18212055,18212148-18212255,18212370-18212518,18212651-18212804,18213044-18213204,18213333-18213539,18213647-18213830,18213926-18214009,18214103-18214299,18214373-18214432,18214548-18214752	AT4G39080.1  CDS  gene_syn F19H22.180, F19H22_180, VACUOLAR PROTON ATPASE A3, VHA-A3  gene VHA-A3  function Vacuolar proton ATPase subunit VHA-a isoform 3. Localized in the tonoplast.  go_component plant-type vacuole|GO:0000325|16618929|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_component vacuolar membrane|GO:0005774|16618929|IDA  go_component plant-type vacuole membrane|GO:0009705|16461582|IDA  go_function ATPase activity|GO:0016887||ISS  product VHA-A3 (VACUOLAR PROTON ATPASE A3); ATPase  note VACUOLAR PROTON ATPASE A3 (VHA-A3); FUNCTIONS IN: ATPase activity; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, V0/A0 complex, 116-kDa subunit (InterPro:IPR002490); BEST Arabidopsis thaliana protein match is: VHA-A2 (VACUOLAR PROTON ATPASE A2); ATPase (TAIR:AT2G21410.1); Has 1744 Blast hits to 1500 proteins in 376 species: Archae - 204; Bacteria - 428; Metazoa - 596; Fungi - 132; Plants - 68; Viruses - 0; Other Eukaryotes - 316 (source: NCBI BLink).  protein_id AT4G39080.1p  transcript_id AT4G39080.1  protein_id AT4G39080.1p  transcript_id AT4G39080.1  
At4g39090	chr4:018216868	0.0	C/18216868-18217326,18216635-18216754,18215826-18216353	AT4G39090.1  CDS  gene_syn F19H22.190, F19H22_190, RD19, RD19A, RESPONSIVE TO DEHYDRATION 19, RESPONSIVE TO DEHYDRATION 19A  gene RD19  function Similar to cysteine proteinases, induced by desiccation but not abscisic acid. Required for RRS1-R mediated resistance against Ralstonia solanacearum. Interacts with the R. solanacearum type III effector PopP2. RD19 associates with PopP2 to form a nuclear complex that is required for activation of the RRS1-R mediated resistance response.  go_component nucleus|GO:0005634|18708476|IDA  go_component vacuole|GO:0005773|18708476|IDA  go_process proteolysis|GO:0006508||ISS  go_process response to osmotic stress|GO:0006970|11779861|IGI  go_process response to desiccation|GO:0009269||IEP  go_process response to water deprivation|GO:0009414|8325504|TAS  go_process response to salt stress|GO:0009651|8325504|IEP  go_process defense response to bacterium|GO:0042742|18708476|IMP  go_function cysteine-type endopeptidase activity|GO:0004197|8325504|ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product RD19 (RESPONSIVE TO DEHYDRATION 19); cysteine-type endopeptidase/ cysteine-type peptidase  note RESPONSIVE TO DEHYDRATION 19 (RD19); FUNCTIONS IN: cysteine-type peptidase activity, cysteine-type endopeptidase activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: cysteine proteinase A494, putative / thiol protease, putative (TAIR:AT2G21430.1); Has 6101 Blast hits to 6057 proteins in 585 species: Archae - 31; Bacteria - 101; Metazoa - 2805; Fungi - 4; Plants - 1193; Viruses - 122; Other Eukaryotes - 1845 (source: NCBI BLink).  protein_id AT4G39090.1p  transcript_id AT4G39090.1  protein_id AT4G39090.1p  transcript_id AT4G39090.1  
At4g39100	chr4:018220062	0.0	C/18220062-18220134,18219634-18219979,18219336-18219404,18218621-18218753,18218298-18218363	AT4G39100.1  CDS  gene_syn SHL1, T22F8.2, short life  gene SHL1  function Putative transcription factor containing a PHD finger and BAH motif, required for normal development  go_component nucleus|GO:0005634|11129039|IDA  go_process post-embryonic development|GO:0009791|11129039|IMP  go_function transcription factor activity|GO:0003700|11129039|ISS  go_function zinc-mediated transcriptional activator activity|GO:0042156|11129039|ISS  product SHL1 (short life); transcription factor/ zinc-mediated transcriptional activator  note short life (SHL1); FUNCTIONS IN: zinc-mediated transcriptional activator activity, transcription factor activity; INVOLVED IN: post-embryonic development; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Bromo adjacent region (InterPro:IPR001025), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: DNA binding / protein binding / zinc ion binding (TAIR:AT4G22140.2); Has 1453 Blast hits to 1415 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 873; Fungi - 268; Plants - 195; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT4G39100.1p  transcript_id AT4G39100.1  protein_id AT4G39100.1p  transcript_id AT4G39100.1  
At4g39110	chr4:018222483	0.0	C/18222483-18225119	AT4G39110.1  CDS  gene_syn T22F8.10, T22F8_10  go_component chloroplast|GO:0009507|18431481|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G21480.1); Has 82854 Blast hits to 81980 proteins in 3066 species: Archae - 46; Bacteria - 7239; Metazoa - 36616; Fungi - 6399; Plants - 18619; Viruses - 343; Other Eukaryotes - 13592 (source: NCBI BLink).  protein_id AT4G39110.1p  transcript_id AT4G39110.1  protein_id AT4G39110.1p  transcript_id AT4G39110.1  
At4g39120	chr4:018227550	0.0	C/18227550-18227901,18227318-18227396,18227040-18227134,18226902-18226951,18226604-18226728,18226367-18226433,18226009-18226098,18225768-18225879,18225578-18225648	AT4G39120.1  CDS  gene_syn IMPL2, MYO-INOSITOL MONOPHOSPHATASE LIKE 2, T22F8.20, T22F8_20  gene IMPL2  function Encodes a myo-inositol monophosphatase IMPL2 (myo-Inositol monophosphatase like 2).  go_component chloroplast|GO:0009507|18431481|IDA  go_process sulfur metabolic process|GO:0006790||ISS  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437||ISS  go_function 3 (2 ),5 -bisphosphate nucleotidase activity|GO:0008441||ISS  go_function inositol-1(or 4)-monophosphatase activity|GO:0008934|19339506|IDA  go_function L-galactose-1-phosphate phosphatase activity|GO:0010347|19339506|IDA  product IMPL2 (MYO-INOSITOL MONOPHOSPHATASE LIKE 2); 3 (2 ),5 -bisphosphate nucleotidase/ L-galactose-1-phosphate phosphatase/ inositol or phosphatidylinositol phosphatase/ inositol-1(or 4)-monophosphatase  note MYO-INOSITOL MONOPHOSPHATASE LIKE 2 (IMPL2); FUNCTIONS IN: L-galactose-1-phosphate phosphatase activity, 3 (2 ),5 -bisphosphate nucleotidase activity, inositol-1(or 4)-monophosphatase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: sulfur metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histidinol-phosphate phosphatase, putative, inositol monophosphatase (InterPro:IPR011809), Inositol monophosphatase (InterPro:IPR000760); BEST Arabidopsis thaliana protein match is: VTC4; 3 (2 ),5 -bisphosphate nucleotidase/ L-galactose-1-phosphate phosphatase/ inositol or phosphatidylinositol phosphatase/ inositol-1(or 4)-monophosphatase (TAIR:AT3G02870.1); Has 11008 Blast hits to 11006 proteins in 1305 species: Archae - 81; Bacteria - 4639; Metazoa - 490; Fungi - 210; Plants - 134; Viruses - 0; Other Eukaryotes - 5454 (source: NCBI BLink).  protein_id AT4G39120.1p  transcript_id AT4G39120.1  protein_id AT4G39120.1p  transcript_id AT4G39120.1  
At4g39130	chr4:018228575	0.0	C/18228575-18228844,18228183-18228368	AT4G39130.1  CDS  gene_syn T22F8.30, T22F8_30  go_process response to stress|GO:0006950||IEA  go_process response to water|GO:0009415||IEA  go_component cellular_component|GO:0005575||ND  go_process response to stress|GO:0006950||ISS  go_process response to water|GO:0009415||ISS  go_function molecular_function|GO:0003674||ND  product dehydrin family protein  note dehydrin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to water, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: LEA (DEHYDRIN LEA) (TAIR:AT2G21490.1); Has 149 Blast hits to 134 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G39130.1p  transcript_id AT4G39130.1  protein_id AT4G39130.1p  transcript_id AT4G39130.1  
At4g39140	chr4:018230997	0.0	C/18230997-18231282,18230677-18230723,18229637-18230593	AT4G39140.1  CDS  gene_syn T22F8.40, T22F8_40  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT2G21500.2); Has 1494 Blast hits to 203 proteins in 51 species: Archae - 0; Bacteria - 6; Metazoa - 85; Fungi - 41; Plants - 92; Viruses - 0; Other Eukaryotes - 1270 (source: NCBI BLink).  protein_id AT4G39140.1p  transcript_id AT4G39140.1  protein_id AT4G39140.1p  transcript_id AT4G39140.1  
At4g39140	chr4:018230997	0.0	C/18230997-18231282,18230677-18230723,18229637-18230593	AT4G39140.2  CDS  gene_syn T22F8.40, T22F8_40  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT2G21500.2); Has 1494 Blast hits to 203 proteins in 51 species: Archae - 0; Bacteria - 6; Metazoa - 85; Fungi - 41; Plants - 92; Viruses - 0; Other Eukaryotes - 1270 (source: NCBI BLink).  protein_id AT4G39140.2p  transcript_id AT4G39140.2  protein_id AT4G39140.2p  transcript_id AT4G39140.2  
At4g39140	chr4:018230997	0.0	C/18230997-18231282,18230677-18230723,18229637-18230593	AT4G39140.3  CDS  gene_syn T22F8.40, T22F8_40  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT2G21500.2); Has 1494 Blast hits to 203 proteins in 51 species: Archae - 0; Bacteria - 6; Metazoa - 85; Fungi - 41; Plants - 92; Viruses - 0; Other Eukaryotes - 1270 (source: NCBI BLink).  protein_id AT4G39140.3p  transcript_id AT4G39140.3  protein_id AT4G39140.3p  transcript_id AT4G39140.3  
At4g39140	chr4:018230997	0.0	C/18230997-18231282,18230677-18230723,18229637-18230593	AT4G39140.4  CDS  gene_syn T22F8.40, T22F8_40  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT2G21500.2); Has 1494 Blast hits to 203 proteins in 51 species: Archae - 0; Bacteria - 6; Metazoa - 85; Fungi - 41; Plants - 92; Viruses - 0; Other Eukaryotes - 1270 (source: NCBI BLink).  protein_id AT4G39140.4p  transcript_id AT4G39140.4  protein_id AT4G39140.4p  transcript_id AT4G39140.4  
At4g39140	chr4:018230997	0.0	C/18230997-18231282,18230677-18230723,18229637-18230593	AT4G39140.5  CDS  gene_syn T22F8.40, T22F8_40  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT2G21500.2); Has 1494 Blast hits to 203 proteins in 51 species: Archae - 0; Bacteria - 6; Metazoa - 85; Fungi - 41; Plants - 92; Viruses - 0; Other Eukaryotes - 1270 (source: NCBI BLink).  protein_id AT4G39140.5p  transcript_id AT4G39140.5  protein_id AT4G39140.5p  transcript_id AT4G39140.5  
At4g39150	chr4:018235654	0.0	C/18235654-18235740,18235370-18235429,18235134-18235216,18234801-18234966,18234586-18234715,18234298-18234456,18234021-18234193,18233823-18233903,18233651-18233749	AT4G39150.1  CDS  gene_syn T22F8.50, T22F8_50  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G21510.1); Has 15752 Blast hits to 15663 proteins in 1939 species: Archae - 106; Bacteria - 5221; Metazoa - 3289; Fungi - 1398; Plants - 1148; Viruses - 18; Other Eukaryotes - 4572 (source: NCBI BLink).  protein_id AT4G39150.1p  transcript_id AT4G39150.1  protein_id AT4G39150.1p  transcript_id AT4G39150.1  
At4g39160	chr4:018236828	0.0	W/18236828-18236876,18236964-18237131,18237223-18237299,18237383-18237568,18237655-18237724,18237807-18238021,18238112-18238382,18238472-18238566,18238653-18238696,18238789-18238990,18239147-18239291,18239367-18239485,18239580-18239744	AT4G39160.1  CDS  gene_syn T22F8.60, T22F8_60  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product DNA binding / transcription factor  note DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SANT, eukarya (InterPro:IPR017884); Has 2945 Blast hits to 2233 proteins in 239 species: Archae - 2; Bacteria - 103; Metazoa - 1074; Fungi - 238; Plants - 95; Viruses - 23; Other Eukaryotes - 1410 (source: NCBI BLink).  protein_id AT4G39160.1p  transcript_id AT4G39160.1  protein_id AT4G39160.1p  transcript_id AT4G39160.1  
At4g39170	chr4:018240887	0.0	W/18240887-18240920,18241157-18242001,18242110-18242159,18242258-18242357,18242430-18242645,18242724-18242859,18242943-18243295,18243389-18243463,18243586-18243621	AT4G39170.1  CDS  gene_syn T22F8.70, T22F8_70  go_component plasma membrane|GO:0005886|17317660|IDA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||IEA  go_process transport|GO:0006810||ISS  go_function phosphatidylinositol transporter activity|GO:0008526||ISS  product SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative  note SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative; FUNCTIONS IN: phosphatidylinositol transporter activity, transporter activity; INVOLVED IN: transport; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: transporter (TAIR:AT2G21520.1); Has 1923 Blast hits to 1918 proteins in 180 species: Archae - 0; Bacteria - 0; Metazoa - 754; Fungi - 392; Plants - 463; Viruses - 0; Other Eukaryotes - 314 (source: NCBI BLink).  protein_id AT4G39170.1p  transcript_id AT4G39170.1  protein_id AT4G39170.1p  transcript_id AT4G39170.1  
At4g39180	chr4:018246628	0.0	C/18246628-18246673,18246304-18246553,18246135-18246234,18245788-18246054,18245629-18245706,18245438-18245539,18245296-18245345,18245108-18245207,18244922-18245011,18244703-18244847,18244284-18244630,18244131-18244205,18244006-18244020	AT4G39180.1  CDS  gene_syn ATSEC14, SEC14, T22F8.80, T22F8_80  gene SEC14  function encodes a protein that complements the function of a sec14(ts) mutant of S. cerevisiae  go_component intracellular|GO:0005622||IEA  go_process phosphatidylcholine biosynthetic process|GO:0006656|9874205|TAS  go_function phosphatidylinositol transporter activity|GO:0008526|9874205|IGI  product SEC14; phosphatidylinositol transporter  note SEC14; FUNCTIONS IN: phosphatidylinositol transporter activity; INVOLVED IN: phosphatidylcholine biosynthetic process; LOCATED IN: intracellular; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SFH3 (SEC14-LIKE 3); phosphatidylinositol transporter (TAIR:AT2G21540.2); Has 2002 Blast hits to 1999 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 771; Fungi - 436; Plants - 462; Viruses - 0; Other Eukaryotes - 333 (source: NCBI BLink).  protein_id AT4G39180.1p  transcript_id AT4G39180.1  protein_id AT4G39180.1p  transcript_id AT4G39180.1  
At4g39190	chr4:018252032	0.0	C/18252032-18252865	AT4G39190.1  CDS  gene_syn T22F8.90, T22F8_90  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G21560.1); Has 5485 Blast hits to 3363 proteins in 297 species: Archae - 6; Bacteria - 340; Metazoa - 1533; Fungi - 355; Plants - 116; Viruses - 18; Other Eukaryotes - 3117 (source: NCBI BLink).  protein_id AT4G39190.1p  transcript_id AT4G39190.1  protein_id AT4G39190.1p  transcript_id AT4G39190.1  
At4g39195	chr4:018254989	0.0	C/18254989-18255024	AT4G39195.1  tRNA  gene_syn 67220.TRNA-TYR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT4G39195.1  
At4g39200	chr4:018257464	0.0	W/18257464-18257466,18257563-18257637,18257833-18257967,18258351-18258464	AT4G39200.1  CDS  gene_syn T22F8.100, T22F8_100  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S25 (RPS25E)  note 40S ribosomal protein S25 (RPS25E); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S25 (InterPro:IPR004977); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S25 (RPS25B) (TAIR:AT2G21580.2); Has 505 Blast hits to 505 proteins in 181 species: Archae - 8; Bacteria - 0; Metazoa - 227; Fungi - 100; Plants - 93; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT4G39200.1p  transcript_id AT4G39200.1  protein_id AT4G39200.1p  transcript_id AT4G39200.1  
At4g39200	chr4:018257464	0.0	W/18257464-18257466,18257563-18257637,18257836-18257967,18258351-18258464	AT4G39200.2  CDS  gene_syn T22F8.100, T22F8_100  go_component ribosome|GO:0005840||ISS  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S25 (RPS25E)  note 40S ribosomal protein S25 (RPS25E); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S25 (InterPro:IPR004977); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S25 (RPS25B) (TAIR:AT2G21580.2); Has 32 Blast hits to 32 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 3; Plants - 10; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT4G39200.2p  transcript_id AT4G39200.2  protein_id AT4G39200.2p  transcript_id AT4G39200.2  
At4g39210	chr4:018260332	0.0	W/18260332-18260547,18260651-18260773,18260887-18261057,18261151-18261243,18261347-18261430,18261511-18261566,18261659-18261752,18261849-18262034,18262128-18262208,18262346-18262432,18262531-18262635,18262725-18262831,18262907-18262967,18263080-18263181	AT4G39210.1  CDS  gene_syn APL3, T22F8.110, T22F8_110  gene APL3  function Encodes the large subunit of ADP-Glucose Pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms (ApL1-4) have been identified. ApL3 is the major large subunit isoform present in inflorescences, fruits and roots.  go_component cellular_component|GO:0005575||ND  go_process response to sucrose stimulus|GO:0009744|16384906|IEP  go_process starch biosynthetic process|GO:0019252|9841881|TAS  go_function glucose-1-phosphate adenylyltransferase activity|GO:0008878|18614708|IDA  go_function glucose-1-phosphate adenylyltransferase activity|GO:0008878|8292792|ISS  product APL3; glucose-1-phosphate adenylyltransferase  note APL3; FUNCTIONS IN: glucose-1-phosphate adenylyltransferase activity; INVOLVED IN: starch biosynthetic process, response to sucrose stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-1-phosphate adenylyltransferase (InterPro:IPR011831), ADP-glucose pyrophosphorylase, conserved site (InterPro:IPR005836), Bacterial transferase hexapeptide repeat (InterPro:IPR001451), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: APL4; glucose-1-phosphate adenylyltransferase (TAIR:AT2G21590.2); Has 5430 Blast hits to 5425 proteins in 982 species: Archae - 241; Bacteria - 2890; Metazoa - 11; Fungi - 8; Plants - 1366; Viruses - 0; Other Eukaryotes - 914 (source: NCBI BLink).  protein_id AT4G39210.1p  transcript_id AT4G39210.1  protein_id AT4G39210.1p  transcript_id AT4G39210.1  
At4g39220	chr4:018264280	0.0	W/18264280-18264632,18265080-18265260,18265490-18265531	AT4G39220.1  CDS  gene_syn ATRER1A, T22F8.120, T22F8_120  gene ATRER1A  function Key player of retrieval of ER membrane proteins  go_component Golgi apparatus|GO:0005794||IDA  go_process retrograde vesicle-mediated transport, Golgi to ER|GO:0006890|10737146|IMP  go_function molecular_function|GO:0003674||ND  product ATRER1A  note ATRER1A; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: retrograde vesicle-mediated transport, Golgi to ER; LOCATED IN: Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Retrieval of early ER protein Rer1 (InterPro:IPR004932); BEST Arabidopsis thaliana protein match is: ATRER1B (TAIR:AT2G21600.1); Has 366 Blast hits to 364 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 102; Plants - 76; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT4G39220.1p  transcript_id AT4G39220.1  protein_id AT4G39220.1p  transcript_id AT4G39220.1  
At4g39230	chr4:018267422	0.0	C/18267422-18267604,18267176-18267310,18266695-18266932,18266276-18266479,18266024-18266190	AT4G39230.1  CDS  gene_syn T22F8.130, T22F8_130  function encodes a protein whose sequence is similar to phenylcoumaran benzylic ether reductase (PCBER), which catalyzes NADPH-dependent reduction of 8-5  linked lignans such as dehydrodiconiferyl alcohol to give isodihydrodehydrodiconiferyl alcohol.  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cellular_component|GO:0005575||ND  go_function phenylcoumaran benzylic ether reductase activity|GO:0032442||ISS  product isoflavone reductase, putative  note isoflavone reductase, putative; FUNCTIONS IN: phenylcoumaran benzylic ether reductase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: isoflavone reductase, putative (TAIR:AT1G75280.1); Has 1091 Blast hits to 1089 proteins in 258 species: Archae - 12; Bacteria - 321; Metazoa - 2; Fungi - 296; Plants - 340; Viruses - 3; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT4G39230.1p  transcript_id AT4G39230.1  protein_id AT4G39230.1p  transcript_id AT4G39230.1  
At4g39235	chr4:018268514	0.0	W/18268514-18268678,18268939-18269034	AT4G39235.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05570.1); Has 39 Blast hits to 39 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G39235.1p  transcript_id AT4G39235.1  protein_id AT4G39235.1p  transcript_id AT4G39235.1  
At4g39240	chr4:018269599	0.0	C/18269599-18270726	AT4G39240.1  CDS  gene_syn T22F8.140, T22F8_140  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G14905.2); Has 1294 Blast hits to 1212 proteins in 90 species: Archae - 10; Bacteria - 44; Metazoa - 634; Fungi - 4; Plants - 571; Viruses - 7; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT4G39240.1p  transcript_id AT4G39240.1  protein_id AT4G39240.1p  transcript_id AT4G39240.1  
At4g39250	chr4:018271580	0.0	C/18271580-18271857,18271457-18271481	AT4G39250.1  CDS  gene_syn ARABIDOPSIS RAD-LIKE 1, ATRL1, T22F8.150, T22F8_150  gene ATRL1  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product ATRL1 (ARABIDOPSIS RAD-LIKE 1); DNA binding / transcription factor  note ARABIDOPSIS RAD-LIKE 1 (ATRL1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SANT, eukarya (InterPro:IPR017884); BEST Arabidopsis thaliana protein match is: MEE3 (MATERNAL EFFECT EMBRYO ARREST 3); DNA binding / transcription factor (TAIR:AT2G21650.1); Has 368 Blast hits to 368 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 98; Fungi - 0; Plants - 269; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G39250.1p  transcript_id AT4G39250.1  protein_id AT4G39250.1p  transcript_id AT4G39250.1  
At4g39260	chr4:018274851	0.0	C/18274851-18274958,18274166-18274567	AT4G39260.1  CDS  gene_syn ATGRP8, CCR1, GLYCINE-RICH PROTEIN 8, GR-RBP8, GRP8, T22F8.160, T22F8_160, cold, circadian rhythm, and RNA binding 1  gene GR-RBP8  function Encodes a glycine-rich protein with RNA binding domain at the N-terminus. Protein is structurally similar to proteins induced by stress in other plants. Gene expression is induced by cold. Transcript undergoes circadian oscillations that is depressed by overexpression of AtGRP7. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process circadian rhythm|GO:0007623|7513083|IEP  go_process response to cold|GO:0009409|16207746|IEP  go_process response to cold|GO:0009409|7513083|IEP  go_process response to salt stress|GO:0009651|11351099|IEP  go_process innate immune response|GO:0045087|17450127|IDA  go_function RNA binding|GO:0003723||ISS  product GR-RBP8; RNA binding / nucleic acid binding / nucleotide binding  note GR-RBP8; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: response to salt stress, response to cold, circadian rhythm, innate immune response; LOCATED IN: nucleolus, cell wall, peroxisome, plasma membrane, chloroplast; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding / double-stranded DNA binding / single-stranded DNA binding (TAIR:AT2G21660.2); Has 135924 Blast hits to 45330 proteins in 1880 species: Archae - 178; Bacteria - 38928; Metazoa - 47958; Fungi - 10100; Plants - 14716; Viruses - 1625; Other Eukaryotes - 22419 (source: NCBI BLink).  protein_id AT4G39260.1p  transcript_id AT4G39260.1  protein_id AT4G39260.1p  transcript_id AT4G39260.1  
At4g39260	chr4:018274851	0.0	C/18274851-18274958,18274315-18274567,18274166-18274185	AT4G39260.2  CDS  gene_syn ATGRP8, CCR1, GLYCINE-RICH PROTEIN 8, GR-RBP8, GRP8, T22F8.160, T22F8_160, cold, circadian rhythm, and RNA binding 1  gene GR-RBP8  function Encodes a glycine-rich protein with RNA binding domain at the N-terminus. Protein is structurally similar to proteins induced by stress in other plants. Gene expression is induced by cold. Transcript undergoes circadian oscillations that is depressed by overexpression of AtGRP7. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process circadian rhythm|GO:0007623|7513083|IEP  go_process response to cold|GO:0009409|16207746|IEP  go_process response to cold|GO:0009409|7513083|IEP  go_process response to salt stress|GO:0009651|11351099|IEP  go_process innate immune response|GO:0045087|17450127|IDA  go_function RNA binding|GO:0003723||ISS  product GR-RBP8; RNA binding / nucleic acid binding / nucleotide binding  note cold, circadian rhythm, and RNA binding 1 (CCR1); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: response to salt stress, response to cold, circadian rhythm, innate immune response; LOCATED IN: nucleolus, cell wall, peroxisome, plasma membrane, chloroplast; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding / double-stranded DNA binding / single-stranded DNA binding (TAIR:AT2G21660.2); Has 72869 Blast hits to 28522 proteins in 1256 species: Archae - 58; Bacteria - 18856; Metazoa - 28261; Fungi - 5198; Plants - 11183; Viruses - 928; Other Eukaryotes - 8385 (source: NCBI BLink).  protein_id AT4G39260.2p  transcript_id AT4G39260.2  protein_id AT4G39260.2p  transcript_id AT4G39260.2  
At4g39260	chr4:018274851	0.0	C/18274851-18274958,18274417-18274567,18274166-18274185	AT4G39260.3  CDS  gene_syn ATGRP8, CCR1, GLYCINE-RICH PROTEIN 8, GR-RBP8, GRP8, T22F8.160, T22F8_160, cold, circadian rhythm, and RNA binding 1  gene GR-RBP8  function Encodes a glycine-rich protein with RNA binding domain at the N-terminus. Protein is structurally similar to proteins induced by stress in other plants. Gene expression is induced by cold. Transcript undergoes circadian oscillations that is depressed by overexpression of AtGRP7. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process circadian rhythm|GO:0007623|7513083|IEP  go_process response to cold|GO:0009409|16207746|IEP  go_process response to cold|GO:0009409|7513083|IEP  go_process response to salt stress|GO:0009651|11351099|IEP  go_process innate immune response|GO:0045087|17450127|IDA  go_function RNA binding|GO:0003723||ISS  product GR-RBP8; RNA binding / nucleic acid binding / nucleotide binding  note cold, circadian rhythm, and RNA binding 1 (CCR1); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: response to salt stress, response to cold, circadian rhythm, innate immune response; LOCATED IN: nucleolus, cell wall, peroxisome, plasma membrane, chloroplast; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding / double-stranded DNA binding / single-stranded DNA binding (TAIR:AT2G21660.2); Has 19515 Blast hits to 14935 proteins in 610 species: Archae - 10; Bacteria - 1119; Metazoa - 11202; Fungi - 2121; Plants - 2940; Viruses - 0; Other Eukaryotes - 2123 (source: NCBI BLink).  protein_id AT4G39260.3p  transcript_id AT4G39260.3  protein_id AT4G39260.3p  transcript_id AT4G39260.3  
At4g39260	chr4:018274851	0.0	C/18274851-18274958,18274471-18274567,18274166-18274278	AT4G39260.4  CDS  gene_syn ATGRP8, CCR1, GLYCINE-RICH PROTEIN 8, GR-RBP8, GRP8, T22F8.160, T22F8_160, cold, circadian rhythm, and RNA binding 1  gene GR-RBP8  function Encodes a glycine-rich protein with RNA binding domain at the N-terminus. Protein is structurally similar to proteins induced by stress in other plants. Gene expression is induced by cold. Transcript undergoes circadian oscillations that is depressed by overexpression of AtGRP7. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process circadian rhythm|GO:0007623|7513083|IEP  go_process response to cold|GO:0009409|16207746|IEP  go_process response to cold|GO:0009409|7513083|IEP  go_process response to salt stress|GO:0009651|11351099|IEP  go_process innate immune response|GO:0045087|17450127|IDA  go_function RNA binding|GO:0003723||ISS  product GR-RBP8; RNA binding / nucleic acid binding / nucleotide binding  note cold, circadian rhythm, and RNA binding 1 (CCR1); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: response to salt stress, response to cold, circadian rhythm, innate immune response; LOCATED IN: nucleolus, cell wall, peroxisome, plasma membrane, chloroplast; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding / double-stranded DNA binding / single-stranded DNA binding (TAIR:AT2G21660.2); Has 35412 Blast hits to 18726 proteins in 1024 species: Archae - 29; Bacteria - 3880; Metazoa - 17517; Fungi - 2600; Plants - 7651; Viruses - 196; Other Eukaryotes - 3539 (source: NCBI BLink).  protein_id AT4G39260.4p  transcript_id AT4G39260.4  protein_id AT4G39260.4p  transcript_id AT4G39260.4  
At4g39270	chr4:018276874	0.0	W/18276874-18278768,18278857-18278985,18279066-18279088,18279163-18279710	AT4G39270.1  CDS  gene_syn T22F8.170, T22F8_170  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT2G16250.1); Has 72502 Blast hits to 41010 proteins in 1153 species: Archae - 30; Bacteria - 3412; Metazoa - 24312; Fungi - 1583; Plants - 38018; Viruses - 89; Other Eukaryotes - 5058 (source: NCBI BLink).  protein_id AT4G39270.1p  transcript_id AT4G39270.1  protein_id AT4G39270.1p  transcript_id AT4G39270.1  
At4g39270	chr4:018276874	0.0	W/18276874-18278768,18278857-18278985,18279066-18279126	AT4G39270.2  CDS  gene_syn T22F8.170, T22F8_170  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT2G16250.1); Has 67283 Blast hits to 35810 proteins in 1001 species: Archae - 26; Bacteria - 2981; Metazoa - 21433; Fungi - 1149; Plants - 37457; Viruses - 43; Other Eukaryotes - 4194 (source: NCBI BLink).  protein_id AT4G39270.2p  transcript_id AT4G39270.2  protein_id AT4G39270.2p  transcript_id AT4G39270.2  
At4g39280	chr4:018284685	0.0	C/18284685-18284831,18284353-18284478,18284170-18284259,18283997-18284053,18283847-18283902,18283671-18283763,18283496-18283580,18283351-18283388,18283228-18283266,18283028-18283104,18282822-18282906,18282643-18282739,18282463-18282559,18282281-18282352,18282128-18282194,18281920-18282045,18281792-18281846,18281641-18281691	AT4G39280.1  CDS  gene_syn T22F8.180, T22F8_180  go_component cytoplasm|GO:0005737||IEA  go_process translation|GO:0006412||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_process phenylalanyl-tRNA aminoacylation|GO:0006432||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function phenylalanine-tRNA ligase activity|GO:0004826||IEA  go_function ATP binding|GO:0005524||IEA  go_process phenylalanyl-tRNA aminoacylation|GO:0006432||ISS  go_function phenylalanine-tRNA ligase activity|GO:0004826||ISS  go_function ATP binding|GO:0005524||ISS  product phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative  note phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative; FUNCTIONS IN: phenylalanine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: phenylalanyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phenylalanyl-tRNA synthetase, class IIc, C-terminal (InterPro:IPR018157), Phenylalanyl-tRNA synthetase, class IIc, alpha subunit (InterPro:IPR004529), Phenylalanyl-tRNA synthetase, class IIc, conserved region (InterPro:IPR002319), Aminoacyl-tRNA synthetase, class II, conserved region (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: phenylalanyl-tRNA synthetase class IIc family protein (TAIR:AT3G58140.1); Has 7323 Blast hits to 7319 proteins in 1861 species: Archae - 218; Bacteria - 3707; Metazoa - 244; Fungi - 169; Plants - 50; Viruses - 0; Other Eukaryotes - 2935 (source: NCBI BLink).  protein_id AT4G39280.1p  transcript_id AT4G39280.1  protein_id AT4G39280.1p  transcript_id AT4G39280.1  
At4g39290	chr4:018285205	0.0	C/18285205-18286302	AT4G39290.1  CDS  gene_syn T22F8.190, T22F8_190  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G23580.1); Has 2600 Blast hits to 2196 proteins in 255 species: Archae - 6; Bacteria - 64; Metazoa - 1723; Fungi - 0; Plants - 642; Viruses - 70; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT4G39290.1p  transcript_id AT4G39290.1  protein_id AT4G39290.1p  transcript_id AT4G39290.1  
At4g39300	chr4:018286835	0.0	W/18286835-18286986,18287111-18287229,18287804-18287823	AT4G39300.1  CDS  gene_syn T22F8.210, T22F8_210  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13674.1); Has 64 Blast hits to 64 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G39300.1p  transcript_id AT4G39300.1  protein_id AT4G39300.1p  transcript_id AT4G39300.1  
At4g39300	chr4:018286835	0.0	W/18286835-18286986,18287111-18287229,18288137-18288156	AT4G39300.2  CDS  gene_syn T22F8.210, T22F8_210  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11630.2); Has 49 Blast hits to 49 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G39300.2p  transcript_id AT4G39300.2  protein_id AT4G39300.2p  transcript_id AT4G39300.2  
At4g39320	chr4:018289102	0.0	W/18289102-18289233,18289334-18289702	AT4G39320.1  CDS  gene_syn T22F8.220, T22F8_220  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product microtubule-associated protein-related  note microtubule-associated protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; Has 410 Blast hits to 279 proteins in 68 species: Archae - 0; Bacteria - 15; Metazoa - 222; Fungi - 17; Plants - 14; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink).  protein_id AT4G39320.1p  transcript_id AT4G39320.1  protein_id AT4G39320.1p  transcript_id AT4G39320.1  
At4g39330	chr4:018291268	0.0	W/18291268-18291365,18291523-18291636,18291720-18292233,18292330-18292483,18292570-18292590,18292706-18292740	AT4G39330.2  CDS  gene_syn ATCAD9, CAD9, CINNAMYL ALCOHOL DEHYDROGENASE 9, T22F8.230, T22F8_230  gene CAD9  go_component apoplast|GO:0048046|18538804|IDA  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9); binding / catalytic/ oxidoreductase/ zinc ion binding  note CINNAMYL ALCOHOL DEHYDROGENASE 9 (CAD9); FUNCTIONS IN: oxidoreductase activity, binding, zinc ion binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: apoplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: CAD3 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 3); binding / catalytic/ oxidoreductase/ zinc ion binding (TAIR:AT2G21890.1); Has 23057 Blast hits to 23045 proteins in 1855 species: Archae - 368; Bacteria - 13340; Metazoa - 1174; Fungi - 1822; Plants - 2016; Viruses - 3; Other Eukaryotes - 4334 (source: NCBI BLink).  protein_id AT4G39330.2p  transcript_id AT4G39330.2  protein_id AT4G39330.2p  transcript_id AT4G39330.2  
At4g39330	chr4:018291268	0.0	W/18291268-18291365,18291523-18291636,18291720-18292233,18292330-18292483,18292570-18292772	AT4G39330.1  CDS  gene_syn ATCAD9, CAD9, CINNAMYL ALCOHOL DEHYDROGENASE 9, T22F8.230, T22F8_230  gene CAD9  go_component apoplast|GO:0048046|18538804|IDA  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9); binding / catalytic/ oxidoreductase/ zinc ion binding  note CINNAMYL ALCOHOL DEHYDROGENASE 9 (CAD9); FUNCTIONS IN: oxidoreductase activity, binding, zinc ion binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: apoplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2); binding / catalytic/ oxidoreductase/ zinc ion binding (TAIR:AT2G21730.1); Has 23520 Blast hits to 23506 proteins in 1862 species: Archae - 369; Bacteria - 13433; Metazoa - 1174; Fungi - 1863; Plants - 2069; Viruses - 3; Other Eukaryotes - 4609 (source: NCBI BLink).  protein_id AT4G39330.1p  transcript_id AT4G39330.1  protein_id AT4G39330.1p  transcript_id AT4G39330.1  
At4g39340	chr4:018293129	0.0	C/18293129-18293512	AT4G39340.1  CDS  gene_syn T22F8.240, T22F8_240  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1278 (InterPro:IPR010701); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G21740.1); Has 53 Blast hits to 53 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G39340.1p  transcript_id AT4G39340.1  protein_id AT4G39340.1p  transcript_id AT4G39340.1  
At4g39345	chr4:018293780	0.0	W/18293780-18293851	AT4G39345.1  tRNA  gene_syn 67220.TRNA-HIS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-His (anticodon: GTG)  transcript_id AT4G39345.1  
At4g39350	chr4:018297078	0.0	W/18297078-18297158,18297667-18298053,18298136-18298238,18298335-18298524,18298634-18298900,18298988-18299333,18299432-18299569,18299719-18299844,18299935-18300147,18300239-18300509,18300592-18300788,18300871-18301221,18301306-18301890	AT4G39350.1  CDS  gene_syn ATH-A, CELLULOSE SYNTHASE, CELLULOSE SYNTHASE A2, CESA2, T22F8.250, T22F8_250  gene CESA2  function Encodes a cellulose synthase isomer, related to CESA6.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|10330464|TAS  go_process primary cell wall biogenesis|GO:0009833|9165747|TAS  go_process cellulose biosynthetic process|GO:0030244|9445479|IMP  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759|9445479|IMP  go_function cellulose synthase activity|GO:0016759||ISS  product CESA2 (CELLULOSE SYNTHASE A2); cellulose synthase/ transferase, transferring glycosyl groups  note CELLULOSE SYNTHASE A2 (CESA2); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: primary cell wall biogenesis, cellulose biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: CESA9 (CELLULOSE SYNTHASE A9); cellulose synthase/ transferase, transferring glycosyl groups (TAIR:AT2G21770.1); Has 2140 Blast hits to 1897 proteins in 418 species: Archae - 4; Bacteria - 682; Metazoa - 3; Fungi - 14; Plants - 1365; Viruses - 5; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT4G39350.1p  transcript_id AT4G39350.1  protein_id AT4G39350.1p  transcript_id AT4G39350.1  
At4g39360	chr4:018303031	0.0	W/18303031-18303435	AT4G39360.1  CDS  gene_syn T22F8.260, T22F8_260  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G21780.1); Has 9 Blast hits to 9 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G39360.1p  transcript_id AT4G39360.1  protein_id AT4G39360.1p  transcript_id AT4G39360.1  
At4g39361	chr4:018304891	0.0	W/18304891-18305010	AT4G39361.1  snoRNA  gene_syn 67220.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT4G39361.1  
At4g39363	chr4:018305256	0.0	W/18305256-18305375	AT4G39363.1  snoRNA  gene_syn 67220.SNORNA00002  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT4G39363.1  
At4g39364	chr4:018305415	0.0	W/18305415-18305536	AT4G39364.1  snoRNA  gene_syn 67220.SNORNA00003  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT4G39364.1  
At4g39366	chr4:018305585	0.0	W/18305585-18305704	AT4G39366.1  snoRNA  gene_syn 67220.SNORNA00004  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT4G39366.1  
At4g39370	chr4:018306392	0.0	W/18306392-18306661,18306744-18306870,18306946-18307046,18307134-18307373,18307469-18307540,18307656-18307784,18307885-18308022,18308136-18308195,18308278-18308625	AT4G39370.1  CDS  gene_syn F23K16.5, F23K16_5, UBIQUITIN-SPECIFIC PROTEASE 27, UBP27  gene UBP27  function Encodes a ubiquitin-specific protease.  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_function ubiquitin-specific protease activity|GO:0004843||ISS  product UBP27 (UBIQUITIN-SPECIFIC PROTEASE 27); ubiquitin thiolesterase/ ubiquitin-specific protease  note UBIQUITIN-SPECIFIC PROTEASE 27 (UBP27); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22); ubiquitin thiolesterase/ ubiquitin-specific protease/ zinc ion binding (TAIR:AT5G10790.1); Has 3207 Blast hits to 2877 proteins in 165 species: Archae - 0; Bacteria - 0; Metazoa - 2004; Fungi - 472; Plants - 368; Viruses - 0; Other Eukaryotes - 363 (source: NCBI BLink).  protein_id AT4G39370.1p  transcript_id AT4G39370.1  protein_id AT4G39370.1p  transcript_id AT4G39370.1  
At4g39370	chr4:018306392	0.0	W/18306392-18306661,18306744-18306870,18306946-18307046,18307134-18307373,18307469-18307540,18307656-18307931	AT4G39370.2  CDS  gene_syn F23K16.5, F23K16_5, UBIQUITIN-SPECIFIC PROTEASE 27, UBP27  gene UBP27  function Encodes a ubiquitin-specific protease.  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_function ubiquitin-specific protease activity|GO:0004843||ISS  product UBP27 (UBIQUITIN-SPECIFIC PROTEASE 27); ubiquitin thiolesterase/ ubiquitin-specific protease  note UBIQUITIN-SPECIFIC PROTEASE 27 (UBP27); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4); ubiquitin-specific protease (TAIR:AT2G22310.1); Has 1714 Blast hits to 1712 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 1087; Fungi - 258; Plants - 190; Viruses - 0; Other Eukaryotes - 179 (source: NCBI BLink).  protein_id AT4G39370.2p  transcript_id AT4G39370.2  protein_id AT4G39370.2p  transcript_id AT4G39370.2  
At4g39380	chr4:018311757	0.0	C/18311757-18311874,18311382-18311587,18311059-18311291,18310804-18310984,18310150-18310707,18309910-18310026,18309628-18309771	AT4G39380.1  CDS  gene_syn F23K16.10, F23K16_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: TKI1 (TSL-kinase interacting protein 1); DNA binding / transcription factor (TAIR:AT2G36960.2); Has 39 Blast hits to 35 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G39380.1p  transcript_id AT4G39380.1  protein_id AT4G39380.1p  transcript_id AT4G39380.1  
At4g39390	chr4:018316278	0.0	W/18316278-18316422,18316538-18316722,18316816-18317016,18317188-18317349,18317534-18317854	AT4G39390.1  CDS  gene_syn A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, ATNST-KT1, F23K16.20, F23K16_20, NST-K1, NUCLEOTIDE SUGAR TRANSPORTER-KT 1  gene NST-K1  function Encodes a golgi localized nucleotide sugar transporter.  go_component Golgi membrane|GO:0000139|16831428|IDA  go_process nucleotide-sugar transport|GO:0015780|16831428|IDA  go_function nucleotide-sugar transmembrane transporter activity|GO:0005338|16831428|IDA  product NST-K1 (NUCLEOTIDE SUGAR TRANSPORTER-KT 1); nucleotide-sugar transmembrane transporter  note NUCLEOTIDE SUGAR TRANSPORTER-KT 1 (NST-K1); FUNCTIONS IN: nucleotide-sugar transmembrane transporter activity; INVOLVED IN: nucleotide-sugar transport; LOCATED IN: Golgi membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: transporter-related (TAIR:AT4G09810.1); Has 1172 Blast hits to 1167 proteins in 148 species: Archae - 2; Bacteria - 6; Metazoa - 339; Fungi - 138; Plants - 547; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink).  protein_id AT4G39390.1p  transcript_id AT4G39390.1  protein_id AT4G39390.1p  transcript_id AT4G39390.1  
At4g39390	chr4:018316278	0.0	W/18316278-18316422,18316538-18316722,18316816-18317016,18317188-18317349,18317534-18317854	AT4G39390.2  CDS  gene_syn A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, ATNST-KT1, F23K16.20, F23K16_20, NST-K1, NUCLEOTIDE SUGAR TRANSPORTER-KT 1  gene NST-K1  function Encodes a golgi localized nucleotide sugar transporter.  go_component Golgi membrane|GO:0000139|16831428|IDA  go_process nucleotide-sugar transport|GO:0015780|16831428|IDA  go_function nucleotide-sugar transmembrane transporter activity|GO:0005338|16831428|IDA  product NST-K1 (NUCLEOTIDE SUGAR TRANSPORTER-KT 1); nucleotide-sugar transmembrane transporter  note NUCLEOTIDE SUGAR TRANSPORTER-KT 1 (NST-K1); FUNCTIONS IN: nucleotide-sugar transmembrane transporter activity; INVOLVED IN: nucleotide-sugar transport; LOCATED IN: Golgi membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: transporter-related (TAIR:AT4G09810.1); Has 1172 Blast hits to 1167 proteins in 148 species: Archae - 2; Bacteria - 6; Metazoa - 339; Fungi - 138; Plants - 547; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink).  protein_id AT4G39390.2p  transcript_id AT4G39390.2  protein_id AT4G39390.2p  transcript_id AT4G39390.2  
At4g39400	chr4:018324826	0.0	W/18324826-18328416	AT4G39400.1  CDS  gene_syn ATBRI1, BIN1, BR INSENSITIVE 1, BRASSINOSTEROID INSENSITIVE 1, BRI1, CABBAGE 2, CBB2, DWARF 2, DWF2, F23K16.30, F23K16_30  gene BRI1  function Encodes a plasma membrane localized leucine-rich repeat receptor kinase involved in brassinosteroid signal transduction. BRI1 ligand is brassinolide which binds at the extracellular domain. Binding results in phosphorylation of the kinase domain which activates the BRI1 protein leading to BR responses. Residue T-1049 and either S-1044 or T-1045 were essential for kinase function in vitro and normal BRI1 signaling in planta. Although BAK1 and BRI1 alone localize in the plasma membrane, when BAK1 and BRI1 are coexpressed, the heterodimer BAK1/BRI1 they form is localized in the endosome. BRI1 appears to be involved in the autonomous pathway that regulates the transition to flowering, primarily through its effects on FLC expression levels, as uncovered by double mutant analyses. This most likely occurs as a result of BRI1-dependent effects on histone acetylation, but not histone triMeH3K4 methylation, at the FLC locus.  go_component endosome|GO:0005768|15548744|IDA  go_component plasma membrane|GO:0005886|10938344|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component plasma membrane|GO:0005886|19004783|IDA  go_component protein complex|GO:0043234|16473966|IPI  go_process detection of brassinosteroid stimulus|GO:0009729|9298904|IMP  go_process brassinosteroid mediated signaling|GO:0009742|19124768|IMP  go_process brassinosteroid mediated signaling|GO:0009742|9298904|IEP  go_process unidimensional cell growth|GO:0009826||IMP  go_process positive regulation of flower development|GO:0009911|17611230|IGI  go_process response to UV-B|GO:0010224|15474373|IGI  go_process brassinosteroid homeostasis|GO:0010268|15908602|IEP  go_function protein kinase activity|GO:0004672|16857903|IDA  go_function protein serine/threonine kinase activity|GO:0004674|15935775|IDA  go_function protein binding|GO:0005515|12150929|IPI  go_function protein binding|GO:0005515|15935775|IPI  go_function protein binding|GO:0005515|15998311|IPI  go_function kinase activity|GO:0016301||ISS  go_function protein homodimerization activity|GO:0042803|15650741|IDA  go_function protein heterodimerization activity|GO:0046982|15548744|IPI  go_function protein heterodimerization activity|GO:0046982|16857903|IPI  product BRI1 (BRASSINOSTEROID INSENSITIVE 1); kinase/ protein binding / protein heterodimerization/ protein homodimerization/ protein kinase/ protein serine/threonine kinase  note BRASSINOSTEROID INSENSITIVE 1 (BRI1); FUNCTIONS IN: in 6 functions; INVOLVED IN: in 6 processes; LOCATED IN: endosome, plasma membrane, protein complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: BRL3 (BRI1-LIKE 3); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase (TAIR:AT3G13380.1); Has 147171 Blast hits to 100234 proteins in 3315 species: Archae - 109; Bacteria - 12282; Metazoa - 56798; Fungi - 7166; Plants - 50384; Viruses - 384; Other Eukaryotes - 20048 (source: NCBI BLink).  protein_id AT4G39400.1p  transcript_id AT4G39400.1  protein_id AT4G39400.1p  transcript_id AT4G39400.1  
At4g39403	chr4:018329189	0.0	C/18329189-18329299	AT4G39403.1  CDS  gene_syn PLS, POLARIS  gene PLS  function Encodes a 36 amino acid polypeptide that is necessary for correct responses to cytokinins and auxins, correct cell expansion in the root, and for vascular patterning in the leaf. Mutation of PLS results in an enhanced ethylene-response phenotype, defective auxin transport and homeostasis, and altered microtubule sensitivity to inhibitors.  go_process response to auxin stimulus|GO:0009733|12172017|IMP  go_process response to cytokinin stimulus|GO:0009735|12172017|IMP  go_process ethylene mediated signaling pathway|GO:0009873|17138700|IMP  go_process auxin polar transport|GO:0009926|17138700|IMP  go_process adaxial/abaxial pattern formation|GO:0009955|12172017|IMP  go_process xylem and phloem pattern formation|GO:0010051|12172017|IMP  go_process auxin homeostasis|GO:0010252|17138700|IMP  go_process root development|GO:0048364|12172017|IMP  go_function molecular_function|GO:0003674||ND  product PLS (POLARIS)  note POLARIS (PLS); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 8 processes; EXPRESSED IN: leaf vascular system, root; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G39403.1p  transcript_id AT4G39403.1  protein_id AT4G39403.1p  transcript_id AT4G39403.1  
At4g39404	chr4:018329734	0.0	C/18329734-18330012	AT4G39404.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G39404.1  
At4g39410	chr4:018334404	0.0	C/18334404-18334789,18333862-18334203,18332937-18333123	AT4G39410.1  CDS  gene_syn AtWRKY13, F23K16.40, F23K16_40, WRKY13  gene WRKY13  function member of WRKY Transcription Factor; Group II-c  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY13; transcription factor  note WRKY13; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY family transcription factor (TAIR:AT2G44745.1); Has 2050 Blast hits to 1759 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 2015; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT4G39410.1p  transcript_id AT4G39410.1  protein_id AT4G39410.1p  transcript_id AT4G39410.1  
At4g39420	chr4:018339731	0.0	W/18339731-18339902,18339980-18340102,18342643-18342718,18343004-18343126,18343558-18343825,18343888-18344352,18344429-18344614,18344716-18345027	AT4G39420.1  CDS  gene_syn F23K16.50, F23K16_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible; Has 6 Blast hits to 6 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G39420.1p  transcript_id AT4G39420.1  protein_id AT4G39420.1p  transcript_id AT4G39420.1  
At4g39420	chr4:018339731	0.0	W/18339731-18339902,18339980-18342153	AT4G39420.2  CDS  gene_syn F23K16.50, F23K16_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible.  protein_id AT4G39420.2p  transcript_id AT4G39420.2  protein_id AT4G39420.2p  transcript_id AT4G39420.2  
At4g39440	chr4:018345685	0.0	W/18345685-18346353,18346476-18346875,18346965-18347227	AT4G39440.1  CDS  gene_syn F23K16.70, F23K16_70  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible; Has 16 Blast hits to 16 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G39440.1p  transcript_id AT4G39440.1  protein_id AT4G39440.1p  transcript_id AT4G39440.1  
At4g39450	chr4:018347593	0.0	W/18347593-18347616,18347794-18347964,18348217-18348417,18348524-18349084,18349316-18349641,18349814-18350228,18350559-18351023,18351395-18351511,18351599-18351720,18351791-18352520,18352672-18352926,18353116-18353298,18353414-18353755,18353952-18354701	AT4G39450.1  CDS  gene_syn F23K16.80, F23K16_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; Has 124 Blast hits to 89 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT4G39450.1p  transcript_id AT4G39450.1  protein_id AT4G39450.1p  transcript_id AT4G39450.1  
At4g39460	chr4:018358542	0.0	C/18358542-18358596,18358333-18358443,18358052-18358138,18357853-18357925,18357628-18357718,18357334-18357387,18357142-18357237,18356967-18357056,18356778-18356829,18356483-18356544,18356329-18356409,18356093-18356218	AT4G39460.1  CDS  gene_syn F23K16.90, F23K16_90, S-ADENOSYLMETHIONINE CARRIER 1, SAM TRANSPORTER1, SAMC1, SAMT1  gene SAMC1  function Encodes a plastid metabolite transporter required for the import of S-Adenosylmethionine from the cytosol. Impaired function of SAMT1 led to decreased accumulation of prenyllipids and mainly affected the chlorophyll pathway.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_component chloroplast|GO:0009507|17098813|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_process chloroplast organization|GO:0009658|17098813|IMP  go_process S-adenosylmethionine transport|GO:0015805|17098813|IDA  go_function S-adenosylmethionine transmembrane transporter activity|GO:0000095|17098813|IDA  go_function binding|GO:0005488||ISS  product SAMC1 (S-ADENOSYLMETHIONINE CARRIER 1); S-adenosylmethionine transmembrane transporter/ binding  note S-ADENOSYLMETHIONINE CARRIER 1 (SAMC1); FUNCTIONS IN: S-adenosylmethionine transmembrane transporter activity, binding; INVOLVED IN: transport, chloroplast organization, mitochondrial transport, S-adenosylmethionine transport; LOCATED IN: mitochondrion, mitochondrial inner membrane, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: SAMC2 (S-adenosylmethionine carrier 2); binding (TAIR:AT1G34065.1); Has 19277 Blast hits to 10039 proteins in 357 species: Archae - 0; Bacteria - 0; Metazoa - 9544; Fungi - 5335; Plants - 2637; Viruses - 0; Other Eukaryotes - 1761 (source: NCBI BLink).  protein_id AT4G39460.1p  transcript_id AT4G39460.1  protein_id AT4G39460.1p  transcript_id AT4G39460.1  
At4g39470	chr4:018360551	0.0	C/18360551-18361165,18360249-18360392,18360049-18360129,18359735-18359920	AT4G39470.1  CDS  gene_syn F23K16.100, F23K16_100  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product chloroplast lumen common family protein  note chloroplast lumen common family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT3G18420.1); Has 1025 Blast hits to 856 proteins in 182 species: Archae - 118; Bacteria - 326; Metazoa - 111; Fungi - 9; Plants - 62; Viruses - 0; Other Eukaryotes - 399 (source: NCBI BLink).  protein_id AT4G39470.1p  transcript_id AT4G39470.1  protein_id AT4G39470.1p  transcript_id AT4G39470.1  
At4g39480	chr4:018362558	0.0	W/18362558-18364108	AT4G39480.1  CDS  gene_syn AT4G39490, CYP96A9, CYTOCHROME P450 96 A9, F23K16.110, F23K16_110  gene CYP96A9  function member of CYP96A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP96A9 (CYTOCHROME P450 96 A9); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYTOCHROME P450 96 A9 (CYP96A9); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP96A10; electron carrier/ heme binding / iron ion binding / monooxygenase (TAIR:AT4G39490.1); Has 19518 Blast hits to 19460 proteins in 1039 species: Archae - 19; Bacteria - 1377; Metazoa - 9048; Fungi - 3681; Plants - 4622; Viruses - 3; Other Eukaryotes - 768 (source: NCBI BLink).  protein_id AT4G39480.1p  transcript_id AT4G39480.1  protein_id AT4G39480.1p  transcript_id AT4G39480.1  
At4g39490	chr4:018365229	0.0	W/18365229-18366788	AT4G39490.1  CDS  gene_syn CYP96A10, F23K16.120, F23K16_120  gene CYP96A10  function member of CYP96A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  product CYP96A10; electron carrier/ heme binding / iron ion binding / monooxygenase  note CYP96A10; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, male gametophyte, sepal, pedicel, carpel; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973); BEST Arabidopsis thaliana protein match is: CYP96A9 (CYTOCHROME P450 96 A9); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G39480.1); Has 20391 Blast hits to 20340 proteins in 1066 species: Archae - 19; Bacteria - 1451; Metazoa - 9515; Fungi - 3861; Plants - 4725; Viruses - 3; Other Eukaryotes - 817 (source: NCBI BLink).  protein_id AT4G39490.1p  transcript_id AT4G39490.1  protein_id AT4G39490.1p  transcript_id AT4G39490.1  
At4g39500	chr4:018366950	0.0	C/18366950-18368359	AT4G39500.1  CDS  gene_syn CYP96A11, F23K16.130, F23K16_130  gene CYP96A11  function member of CYP96A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP96A11; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP96A11; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP96A2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G32170.1); Has 19999 Blast hits to 19948 proteins in 1058 species: Archae - 19; Bacteria - 1469; Metazoa - 9046; Fungi - 3914; Plants - 4606; Viruses - 3; Other Eukaryotes - 942 (source: NCBI BLink).  protein_id AT4G39500.1p  transcript_id AT4G39500.1  protein_id AT4G39500.1p  transcript_id AT4G39500.1  
At4g39510	chr4:018368945	0.0	C/18368945-18370471	AT4G39510.1  CDS  gene_syn CYP96A12, F23K16.140, F23K16_140  gene CYP96A12  function member of CYP96A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP96A12; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP96A12; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP96A2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G32170.1); Has 20436 Blast hits to 20386 proteins in 1069 species: Archae - 19; Bacteria - 1424; Metazoa - 9403; Fungi - 4085; Plants - 4748; Viruses - 3; Other Eukaryotes - 754 (source: NCBI BLink).  protein_id AT4G39510.1p  transcript_id AT4G39510.1  protein_id AT4G39510.1p  transcript_id AT4G39510.1  
At4g39520	chr4:018373959	0.0	C/18373959-18374000,18373754-18373807,18373183-18373359,18372854-18372925,18372492-18372551,18372305-18372414,18371913-18372212,18371638-18371829,18371486-18371537,18371329-18371379	AT4G39520.1  CDS  gene_syn F23K16.150, F23K16_150  go_component intracellular|GO:0005622||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product GTP-binding protein, putative  note GTP-binding protein, putative; FUNCTIONS IN: GTP binding; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), TGS (InterPro:IPR004095), GTP1/OBG (InterPro:IPR006073), GTP1/OBG, conserved site (InterPro:IPR006074), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: developmentally regulated GTP-binding protein, putative (TAIR:AT1G72660.3); Has 12043 Blast hits to 12023 proteins in 1588 species: Archae - 468; Bacteria - 6069; Metazoa - 728; Fungi - 429; Plants - 176; Viruses - 0; Other Eukaryotes - 4173 (source: NCBI BLink).  protein_id AT4G39520.1p  transcript_id AT4G39520.1  protein_id AT4G39520.1p  transcript_id AT4G39520.1  
At4g39530	chr4:018374736	0.0	C/18374736-18377240	AT4G39530.1  CDS  gene_syn F23K16.160, F23K16_160  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G13650.1); Has 20325 Blast hits to 5288 proteins in 187 species: Archae - 2; Bacteria - 5; Metazoa - 142; Fungi - 112; Plants - 19558; Viruses - 0; Other Eukaryotes - 506 (source: NCBI BLink).  protein_id AT4G39530.1p  transcript_id AT4G39530.1  protein_id AT4G39530.1p  transcript_id AT4G39530.1  
At4g39540	chr4:018378561	0.0	W/18378561-18378756,18378856-18378917,18379039-18379093,18379183-18379255,18379334-18379421,18379497-18379582,18379659-18379791,18379868-18379946,18380033-18380097,18380188-18380253	AT4G39540.1  CDS  gene_syn F23K16.170, F23K16_170  go_function shikimate kinase activity|GO:0004765||IEA  go_function ATP binding|GO:0005524||IEA  go_process aromatic amino acid family biosynthetic process|GO:0009073|1338949|TAS  product shikimate kinase family protein  note shikimate kinase family protein; FUNCTIONS IN: shikimate kinase activity, ATP binding; INVOLVED IN: aromatic amino acid family biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Shikimate kinase (InterPro:IPR000623); BEST Arabidopsis thaliana protein match is: shikimate kinase, putative (TAIR:AT2G21940.5); Has 5135 Blast hits to 5135 proteins in 1302 species: Archae - 22; Bacteria - 2939; Metazoa - 39; Fungi - 82; Plants - 88; Viruses - 0; Other Eukaryotes - 1965 (source: NCBI BLink).  protein_id AT4G39540.1p  transcript_id AT4G39540.1  protein_id AT4G39540.1p  transcript_id AT4G39540.1  
At4g39540	chr4:018378561	0.0	W/18378561-18378756,18378856-18378917,18379039-18379093,18379183-18379255,18379334-18379421,18379497-18379582,18379659-18379791,18379868-18379946,18380033-18380097,18380188-18380253	AT4G39540.2  CDS  gene_syn F23K16.170, F23K16_170  go_function shikimate kinase activity|GO:0004765||IEA  go_function ATP binding|GO:0005524||IEA  go_process aromatic amino acid family biosynthetic process|GO:0009073|1338949|TAS  product shikimate kinase family protein  note shikimate kinase family protein; FUNCTIONS IN: shikimate kinase activity, ATP binding; INVOLVED IN: aromatic amino acid family biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Shikimate kinase (InterPro:IPR000623); BEST Arabidopsis thaliana protein match is: shikimate kinase, putative (TAIR:AT2G21940.5); Has 5135 Blast hits to 5135 proteins in 1302 species: Archae - 22; Bacteria - 2939; Metazoa - 39; Fungi - 82; Plants - 88; Viruses - 0; Other Eukaryotes - 1965 (source: NCBI BLink).  protein_id AT4G39540.2p  transcript_id AT4G39540.2  protein_id AT4G39540.2p  transcript_id AT4G39540.2  
At4g39550	chr4:018380681	0.0	C/18380681-18381859	AT4G39550.1  CDS  gene_syn F23K16.180, F23K16_180  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49000.2); Has 2334 Blast hits to 1835 proteins in 108 species: Archae - 6; Bacteria - 90; Metazoa - 1470; Fungi - 6; Plants - 681; Viruses - 3; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT4G39550.1p  transcript_id AT4G39550.1  protein_id AT4G39550.1p  transcript_id AT4G39550.1  
At4g39560	chr4:018382940	0.0	C/18382940-18383740	AT4G39560.1  CDS  gene_syn F23K16.190, F23K16_190  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), EF-HAND 1 (InterPro:IPR018247), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49000.2); Has 2608 Blast hits to 2033 proteins in 134 species: Archae - 4; Bacteria - 110; Metazoa - 1739; Fungi - 7; Plants - 628; Viruses - 37; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT4G39560.1p  transcript_id AT4G39560.1  protein_id AT4G39560.1p  transcript_id AT4G39560.1  
At4g39560	chr4:018382940	0.0	C/18382940-18383740	AT4G39560.2  CDS  gene_syn F23K16.190, F23K16_190  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), EF-HAND 1 (InterPro:IPR018247), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49000.2); Has 2608 Blast hits to 2033 proteins in 134 species: Archae - 4; Bacteria - 110; Metazoa - 1739; Fungi - 7; Plants - 628; Viruses - 37; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT4G39560.2p  transcript_id AT4G39560.2  protein_id AT4G39560.2p  transcript_id AT4G39560.2  
At4g39570	chr4:018384254	0.0	C/18384254-18385441	AT4G39570.1  CDS  gene_syn F23K16.200, F23K16_200  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G39550.1); Has 924 Blast hits to 892 proteins in 78 species: Archae - 2; Bacteria - 33; Metazoa - 228; Fungi - 0; Plants - 616; Viruses - 18; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT4G39570.1p  transcript_id AT4G39570.1  protein_id AT4G39570.1p  transcript_id AT4G39570.1  
At4g39580	chr4:018385684	0.0	C/18385684-18386811	AT4G39580.1  CDS  gene_syn F23K16.210, F23K16_210  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G39550.1); Has 6715 Blast hits to 3439 proteins in 186 species: Archae - 12; Bacteria - 323; Metazoa - 5315; Fungi - 6; Plants - 746; Viruses - 74; Other Eukaryotes - 239 (source: NCBI BLink).  protein_id AT4G39580.1p  transcript_id AT4G39580.1  protein_id AT4G39580.1p  transcript_id AT4G39580.1  
At4g39590	chr4:018387515	0.0	C/18387515-18388723	AT4G39590.1  CDS  gene_syn F23K16.220, F23K16_220  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: sperm cell, male gametophyte, sepal, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT1G61540.1); Has 1496 Blast hits to 1378 proteins in 117 species: Archae - 6; Bacteria - 94; Metazoa - 666; Fungi - 7; Plants - 651; Viruses - 22; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT4G39590.1p  transcript_id AT4G39590.1  protein_id AT4G39590.1p  transcript_id AT4G39590.1  
At4g39600	chr4:018389436	0.0	C/18389436-18390539	AT4G39600.1  CDS  gene_syn F23K16.230, F23K16_230  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT5G48990.1); Has 887 Blast hits to 871 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 299; Fungi - 0; Plants - 568; Viruses - 3; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT4G39600.1p  transcript_id AT4G39600.1  protein_id AT4G39600.1p  transcript_id AT4G39600.1  
At4g39610	chr4:018393808	0.0	C/18393808-18394602	AT4G39610.1  CDS  gene_syn F23K16.240, F23K16_240  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF617, plant (InterPro:IPR006460); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G21990.1); Has 140 Blast hits to 140 proteins in 8 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G39610.1p  transcript_id AT4G39610.1  protein_id AT4G39610.1p  transcript_id AT4G39610.1  
At4g39615	chr4:018395028	0.0	W/18395028-18395099	AT4G39615.1  tRNA  gene_syn 67221.TRNA-TRP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Trp (anticodon: CCA)  transcript_id AT4G39615.1  
At4g39620	chr4:018395294	0.0	W/18395294-18395647,18396005-18397156,18397393-18397578	AT4G39620.1  CDS  gene_syn EMB2453, F23K16.250, F23K16_250, embryo defective 2453  gene EMB2453  go_component chloroplast|GO:0009507||IEA  go_process embryonic development ending in seed dormancy|GO:0009793|15647901|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product EMB2453 (embryo defective 2453)  note embryo defective 2453 (EMB2453); INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: EMB2750 (embryo defective 2750) (TAIR:AT3G06430.1); Has 17008 Blast hits to 5501 proteins in 173 species: Archae - 3; Bacteria - 16; Metazoa - 296; Fungi - 289; Plants - 15708; Viruses - 0; Other Eukaryotes - 696 (source: NCBI BLink).  protein_id AT4G39620.1p  transcript_id AT4G39620.1  protein_id AT4G39620.1p  transcript_id AT4G39620.1  
At4g39630	chr4:018399155	0.0	C/18399155-18399263,18398741-18399073,18398617-18398663,18398247-18398309,18397857-18397992,18397749-18397762	AT4G39630.1  CDS  gene_syn F23K16.7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; Has 11 Blast hits to 11 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G39630.1p  transcript_id AT4G39630.1  protein_id AT4G39630.1p  transcript_id AT4G39630.1  
At4g39640	chr4:018400608	0.0	W/18400608-18400931,18401122-18401637,18401728-18401963,18402042-18402312,18402400-18402537,18402628-18402861	AT4G39640.1  CDS  gene_syn GAMMA-GLUTAMYL TRANSPEPTIDASE 1, GGT1, T19P19.30, T19P19_30  gene GGT1  function The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in vascular tissues (predominantly phloem) of leaves and is involved in the degradation of glutathione. The encoded enzyme also mitigates oxidative stress by metabolizing GSSG (oxidized form of GSH - glutathione) in the apoplast.  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component apoplast|GO:0048046|17316175|IDA  go_process glutathione catabolic process|GO:0006751|17316175|IDA  go_process response to oxidative stress|GO:0006979|17316175|IDA  go_function gamma-glutamyltransferase activity|GO:0003840||ISS  go_function glutathione gamma-glutamylcysteinyltransferase activity|GO:0016756|17316175|IDA  product GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1); gamma-glutamyltransferase/ glutathione gamma-glutamylcysteinyltransferase  note GAMMA-GLUTAMYL TRANSPEPTIDASE 1 (GGT1); FUNCTIONS IN: gamma-glutamyltransferase activity, glutathione gamma-glutamylcysteinyltransferase activity; INVOLVED IN: response to oxidative stress, glutathione catabolic process; LOCATED IN: apoplast, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Gamma-glutamyltranspeptidase (InterPro:IPR000101); BEST Arabidopsis thaliana protein match is: GGT2 (GAMMA-GLUTAMYL TRANSPEPTIDASE 2); gamma-glutamyltransferase/ glutathione gamma-glutamylcysteinyltransferase (TAIR:AT4G39650.1); Has 7145 Blast hits to 7131 proteins in 879 species: Archae - 45; Bacteria - 2564; Metazoa - 600; Fungi - 194; Plants - 56; Viruses - 1; Other Eukaryotes - 3685 (source: NCBI BLink).  protein_id AT4G39640.1p  transcript_id AT4G39640.1  protein_id AT4G39640.1p  transcript_id AT4G39640.1  
At4g39640	chr4:018400608	0.0	W/18400608-18400931,18401122-18401637,18401728-18401963,18402042-18402312,18402400-18402537,18402628-18402861	AT4G39640.2  CDS  gene_syn GAMMA-GLUTAMYL TRANSPEPTIDASE 1, GGT1, T19P19.30, T19P19_30  gene GGT1  function The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in vascular tissues (predominantly phloem) of leaves and is involved in the degradation of glutathione. The encoded enzyme also mitigates oxidative stress by metabolizing GSSG (oxidized form of GSH - glutathione) in the apoplast.  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component apoplast|GO:0048046|17316175|IDA  go_process glutathione catabolic process|GO:0006751|17316175|IDA  go_process response to oxidative stress|GO:0006979|17316175|IDA  go_function gamma-glutamyltransferase activity|GO:0003840||ISS  go_function glutathione gamma-glutamylcysteinyltransferase activity|GO:0016756|17316175|IDA  product GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1); gamma-glutamyltransferase/ glutathione gamma-glutamylcysteinyltransferase  note GAMMA-GLUTAMYL TRANSPEPTIDASE 1 (GGT1); FUNCTIONS IN: gamma-glutamyltransferase activity, glutathione gamma-glutamylcysteinyltransferase activity; INVOLVED IN: response to oxidative stress, glutathione catabolic process; LOCATED IN: apoplast, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Gamma-glutamyltranspeptidase (InterPro:IPR000101); BEST Arabidopsis thaliana protein match is: GGT2 (GAMMA-GLUTAMYL TRANSPEPTIDASE 2); gamma-glutamyltransferase/ glutathione gamma-glutamylcysteinyltransferase (TAIR:AT4G39650.1); Has 7145 Blast hits to 7131 proteins in 879 species: Archae - 45; Bacteria - 2564; Metazoa - 600; Fungi - 194; Plants - 56; Viruses - 1; Other Eukaryotes - 3685 (source: NCBI BLink).  protein_id AT4G39640.2p  transcript_id AT4G39640.2  protein_id AT4G39640.2p  transcript_id AT4G39640.2  
At4g39650	chr4:018403602	0.0	W/18403602-18403608,18403714-18404042,18404181-18404699,18404778-18405016,18405094-18405364,18405460-18405597,18405681-18405914	AT4G39650.1  CDS  gene_syn GAMMA-GLUTAMYL TRANSPEPTIDASE 2, GGT2, T19P19.40, T19P19_40  gene GGT2  function The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in the apoplast of young siliques (within the ovules of the carpel) and is involved in the degradation of glutathione. The encoded enzyme also acts as part of a GSH pumping gamma-glutamyl cycle in this tissue and may also be involved in gamma-glutamyl amino acid formation.  go_component apoplast|GO:0048046|17316175|IDA  go_process glutathione catabolic process|GO:0006751|17316175|IDA  go_function gamma-glutamyltransferase activity|GO:0003840||ISS  go_function glutathione gamma-glutamylcysteinyltransferase activity|GO:0016756|17316175|IDA  product GGT2 (GAMMA-GLUTAMYL TRANSPEPTIDASE 2); gamma-glutamyltransferase/ glutathione gamma-glutamylcysteinyltransferase  note GAMMA-GLUTAMYL TRANSPEPTIDASE 2 (GGT2); FUNCTIONS IN: gamma-glutamyltransferase activity, glutathione gamma-glutamylcysteinyltransferase activity; INVOLVED IN: glutathione catabolic process; LOCATED IN: apoplast; EXPRESSED IN: sperm cell, fruit; EXPRESSED DURING: ovule developmental stages; CONTAINS InterPro DOMAIN/s: Gamma-glutamyltranspeptidase (InterPro:IPR000101); BEST Arabidopsis thaliana protein match is: GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1); gamma-glutamyltransferase/ glutathione gamma-glutamylcysteinyltransferase (TAIR:AT4G39640.2); Has 7185 Blast hits to 7174 proteins in 879 species: Archae - 45; Bacteria - 2564; Metazoa - 606; Fungi - 192; Plants - 56; Viruses - 1; Other Eukaryotes - 3721 (source: NCBI BLink).  protein_id AT4G39650.1p  transcript_id AT4G39650.1  protein_id AT4G39650.1p  transcript_id AT4G39650.1  
At4g39660	chr4:018406797	0.0	W/18406797-18407030,18407261-18407491,18407589-18407759,18407960-18408103,18408200-18408379,18408524-18408749,18408825-18408938,18409023-18409109,18409219-18409262	AT4G39660.1  CDS  gene_syn AGT2, ALANINE:GLYOXYLATE AMINOTRANSFERASE 2, T19P19.50, T19P19_50  gene AGT2  function alanine:glyoxylate aminotransferase 2 homolog (AGT2) mRNA,  go_component mitochondrion|GO:0005739|18385124|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function catalytic activity|GO:0003824||IEA  go_function transaminase activity|GO:0008483||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function alanine-glyoxylate transaminase activity|GO:0008453||ISS  product AGT2 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 2); alanine-glyoxylate transaminase/ catalytic/ pyridoxal phosphate binding / transaminase  note ALANINE:GLYOXYLATE AMINOTRANSFERASE 2 (AGT2); FUNCTIONS IN: pyridoxal phosphate binding, transaminase activity, catalytic activity, alanine-glyoxylate transaminase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase class-III (InterPro:IPR005814), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putative (TAIR:AT3G08860.1); Has 24407 Blast hits to 24400 proteins in 1636 species: Archae - 419; Bacteria - 12485; Metazoa - 558; Fungi - 537; Plants - 229; Viruses - 14; Other Eukaryotes - 10165 (source: NCBI BLink).  protein_id AT4G39660.1p  transcript_id AT4G39660.1  protein_id AT4G39660.1p  transcript_id AT4G39660.1  
At4g39670	chr4:018410172	0.0	W/18410172-18410861	AT4G39670.1  CDS  gene_syn T19P19.60, T19P19_60  go_component cytoplasm|GO:0005737||IEA  go_process glycolipid transport|GO:0046836||IEA  go_function glycolipid transporter activity|GO:0017089||IEA  go_function glycolipid binding|GO:0051861||IEA  product glycolipid binding / glycolipid transporter  note glycolipid binding / glycolipid transporter; FUNCTIONS IN: glycolipid transporter activity, glycolipid binding; INVOLVED IN: glycolipid transport; LOCATED IN: cytoplasm; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycolipid transfer protein, GLTP (InterPro:IPR014830); BEST Arabidopsis thaliana protein match is: ACD11 (ACCELERATED CELL DEATH 11); sphingosine transmembrane transporter (TAIR:AT2G34690.1); Has 190 Blast hits to 190 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 102; Fungi - 9; Plants - 66; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT4G39670.1p  transcript_id AT4G39670.1  protein_id AT4G39670.1p  transcript_id AT4G39670.1  
At4g39672	chr4:018411265	0.0	W/18411265-18411338	AT4G39672.1  tRNA  gene_syn 67221.TRNA-VAL-1, 67222.TRNA-VAL-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Val (anticodon: CAC)  transcript_id AT4G39672.1  
At4g39675	chr4:018413841	0.0	W/18413841-18414053	AT4G39675.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, leaf apex, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G39675.1p  transcript_id AT4G39675.1  protein_id AT4G39675.1p  transcript_id AT4G39675.1  
At4g39680	chr4:018415786	0.0	C/18415786-18416938,18415385-18415573,18415139-18415290,18414604-18415011	AT4G39680.1  CDS  gene_syn T19P19.70, T19P19_70  go_component chloroplast|GO:0009507|15028209|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_component nucleus|GO:0005634||ISS  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product SAP domain-containing protein  note SAP domain-containing protein; FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26630.2); Has 10132 Blast hits to 6217 proteins in 537 species: Archae - 24; Bacteria - 931; Metazoa - 3852; Fungi - 1124; Plants - 2077; Viruses - 539; Other Eukaryotes - 1585 (source: NCBI BLink).  protein_id AT4G39680.1p  transcript_id AT4G39680.1  protein_id AT4G39680.1p  transcript_id AT4G39680.1  
At4g39680	chr4:018415786	0.0	C/18415786-18416938,18415385-18415573,18415139-18415290,18414604-18415011	AT4G39680.2  CDS  gene_syn T19P19.70, T19P19_70  go_function nucleic acid binding|GO:0003676||IEA  go_component nucleus|GO:0005634||ISS  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product SAP domain-containing protein  note SAP domain-containing protein; FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26630.2); Has 10132 Blast hits to 6217 proteins in 537 species: Archae - 24; Bacteria - 931; Metazoa - 3852; Fungi - 1124; Plants - 2077; Viruses - 539; Other Eukaryotes - 1585 (source: NCBI BLink).  protein_id AT4G39680.2p  transcript_id AT4G39680.2  protein_id AT4G39680.2p  transcript_id AT4G39680.2  
At4g39690	chr4:018417755	0.0	W/18417755-18417765,18417958-18418021,18418104-18418820,18419320-18419442,18419546-18419698,18419808-18419885,18420112-18420204,18420288-18420407,18420757-18420834,18420946-18421125,18421207-18421308,18421400-18421633	AT4G39690.1  CDS  gene_syn T19P19.80, T19P19_80  go_component mitochondrion|GO:0005739|15276431|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; Has 6265 Blast hits to 4855 proteins in 651 species: Archae - 26; Bacteria - 1226; Metazoa - 2506; Fungi - 658; Plants - 238; Viruses - 35; Other Eukaryotes - 1576 (source: NCBI BLink).  protein_id AT4G39690.1p  transcript_id AT4G39690.1  protein_id AT4G39690.1p  transcript_id AT4G39690.1  
At4g39700	chr4:018424265	0.0	W/18424265-18424436,18424602-18424906	AT4G39700.1  CDS  gene_syn T19P19.90, T19P19_90  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related  note heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related (TAIR:AT4G08570.1); Has 691 Blast hits to 661 proteins in 56 species: Archae - 0; Bacteria - 13; Metazoa - 5; Fungi - 26; Plants - 647; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G39700.1p  transcript_id AT4G39700.1  protein_id AT4G39700.1p  transcript_id AT4G39700.1  
At4g39710	chr4:018427978	0.0	C/18427978-18428325,18427799-18427891,18427559-18427619,18427414-18427482,18427249-18427331	AT4G39710.1  CDS  gene_syn T19P19.100, T19P19_100  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_process protein folding|GO:0006457||IEA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  go_function FK506 binding|GO:0005528||ISS  product immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative  note immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FK506-binding protein 1 (FKBP13) (TAIR:AT5G45680.1); Has 6176 Blast hits to 5824 proteins in 1083 species: Archae - 68; Bacteria - 2849; Metazoa - 1385; Fungi - 335; Plants - 363; Viruses - 0; Other Eukaryotes - 1176 (source: NCBI BLink).  protein_id AT4G39710.1p  transcript_id AT4G39710.1  protein_id AT4G39710.1p  transcript_id AT4G39710.1  
At4g39720	chr4:018429992	0.0	C/18429992-18430864	AT4G39720.1  CDS  gene_syn T19P19.110, T19P19_110  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product VQ motif-containing protein  note VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT5G65170.1); Has 384 Blast hits to 356 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 6; Plants - 100; Viruses - 0; Other Eukaryotes - 243 (source: NCBI BLink).  protein_id AT4G39720.1p  transcript_id AT4G39720.1  protein_id AT4G39720.1p  transcript_id AT4G39720.1  
At4g39730	chr4:018432950	0.0	W/18432950-18433018,18433105-18433581	AT4G39730.1  CDS  gene_syn T19P19.120, T19P19_120  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product lipid-associated family protein  note lipid-associated family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, plasma membrane, chloroplast, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976); BEST Arabidopsis thaliana protein match is: lipid-associated family protein (TAIR:AT2G22170.1); Has 164 Blast hits to 150 proteins in 34 species: Archae - 0; Bacteria - 1; Metazoa - 73; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT4G39730.1p  transcript_id AT4G39730.1  protein_id AT4G39730.1p  transcript_id AT4G39730.1  
At4g39740	chr4:018437034	0.0	C/18437034-18437095,18436657-18436798,18436486-18436561,18436189-18436407,18435990-18436079,18435776-18435908,18435586-18435694	AT4G39740.1  CDS  gene_syn T19P19.130, T19P19_130  go_function molecular_function|GO:0003674||ND  product electron transport SCO1/SenC family protein  note electron transport SCO1/SenC family protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Copper chaperone SCO1/SenC (InterPro:IPR003782), Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: electron transport SCO1/SenC family protein (TAIR:AT3G08950.1); Has 2451 Blast hits to 2451 proteins in 612 species: Archae - 9; Bacteria - 1265; Metazoa - 132; Fungi - 105; Plants - 35; Viruses - 0; Other Eukaryotes - 905 (source: NCBI BLink).  protein_id AT4G39740.1p  transcript_id AT4G39740.1  protein_id AT4G39740.1p  transcript_id AT4G39740.1  
At4g39745	chr4:018437806	0.0	W/18437806-18438156,18438255-18438665	AT4G39745.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT2G22180.1); Has 56 Blast hits to 56 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 9; Plants - 27; Viruses - 3; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G39745.1p  transcript_id AT4G39745.1  protein_id AT4G39745.1p  transcript_id AT4G39745.1  
At4g39750	chr4:018439138	0.0	W/18439138-18439578	AT4G39750.1  CDS  gene_syn T19P19.3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G39753.1); Has 185 Blast hits to 179 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 185; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G39750.1p  transcript_id AT4G39750.1  protein_id AT4G39750.1p  transcript_id AT4G39750.1  
At4g39753	chr4:018440125	0.0	W/18440125-18441297	AT4G39753.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G39756.1); Has 661 Blast hits to 633 proteins in 59 species: Archae - 6; Bacteria - 33; Metazoa - 140; Fungi - 2; Plants - 462; Viruses - 4; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT4G39753.1p  transcript_id AT4G39753.1  protein_id AT4G39753.1p  transcript_id AT4G39753.1  
At4g39756	chr4:018441756	0.0	W/18441756-18442880	AT4G39756.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G39753.1); Has 2268 Blast hits to 1909 proteins in 103 species: Archae - 6; Bacteria - 84; Metazoa - 1521; Fungi - 0; Plants - 600; Viruses - 5; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT4G39756.1p  transcript_id AT4G39756.1  protein_id AT4G39756.1p  transcript_id AT4G39756.1  
At4g39760	chr4:018443679	0.0	W/18443679-18444788	AT4G39760.1  CDS  gene_syn T19P19.150, T19P19_150  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G39756.1); Has 568 Blast hits to 554 proteins in 33 species: Archae - 0; Bacteria - 5; Metazoa - 28; Fungi - 0; Plants - 535; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G39760.1p  transcript_id AT4G39760.1  protein_id AT4G39760.1p  transcript_id AT4G39760.1  
At4g39770	chr4:018451215	0.0	C/18451215-18451218,18450926-18451128,18450693-18450833,18450537-18450608,18450358-18450450,18450203-18450268,18449993-18450094,18449828-18449905,18449666-18449735,18449504-18449574,18449320-18449412,18449138-18449194	AT4G39770.1  CDS  gene_syn T19P19.160, T19P19_160  go_process trehalose biosynthetic process|GO:0005992||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process trehalose biosynthetic process|GO:0005992||ISS  go_function trehalose-phosphatase activity|GO:0004805||ISS  product trehalose-6-phosphate phosphatase, putative  note trehalose-6-phosphate phosphatase, putative; FUNCTIONS IN: catalytic activity, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: catalytic/ trehalose-phosphatase (TAIR:AT2G22190.1); Has 1503 Blast hits to 1499 proteins in 531 species: Archae - 29; Bacteria - 768; Metazoa - 195; Fungi - 108; Plants - 274; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).  protein_id AT4G39770.1p  transcript_id AT4G39770.1  protein_id AT4G39770.1p  transcript_id AT4G39770.1  
At4g39780	chr4:018458216	0.0	C/18458216-18459034	AT4G39780.1  CDS  gene_syn T19P19.170, T19P19_170  function encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634|9192694|IC  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677|9192694|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9192694|ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor (TAIR:AT2G22200.1); Has 3825 Blast hits to 3737 proteins in 204 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 3787; Viruses - 5; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT4G39780.1p  transcript_id AT4G39780.1  protein_id AT4G39780.1p  transcript_id AT4G39780.1  
At4g39790	chr4:018463711	0.0	C/18463711-18464584,18463553-18463633,18463261-18463481,18462962-18463185,18462316-18462889	AT4G39790.1  CDS  gene_syn T19P19.180, T19P19_180  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G27090.1); Has 294 Blast hits to 239 proteins in 23 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 4; Plants - 282; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G39790.1p  transcript_id AT4G39790.1  protein_id AT4G39790.1p  transcript_id AT4G39790.1  
At4g39795	chr4:018466621	0.0	W/18466621-18466901,18467226-18467325	AT4G39795.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product senescence-associated protein-related  note senescence-associated protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: senescence-associated protein-related (TAIR:AT1G78020.1); Has 277 Blast hits to 277 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 277; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G39795.1p  transcript_id AT4G39795.1  protein_id AT4G39795.1p  transcript_id AT4G39795.1  
At4g39800	chr4:018471703	0.0	C/18471703-18471893,18471553-18471621,18471334-18471469,18470990-18471237,18470675-18470901,18470477-18470592,18470205-18470381,18469928-18470116,18469659-18469841	AT4G39800.1  CDS  gene_syn ATMIPS1, ATMIPS2, MI-1-P SYNTHASE, MIPS1, MIPS2, MYO-INOSITOL-1-PHOSPHATE SYNTHASE, MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1, MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2, T19P19.190, T19P19_190, T5J17.3  gene MIPS1  function ** Referred to as MIPS2 in Mitsuhashi et al 2008. myo-inositol-1-phosphate synthase isoform 1.Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.  go_component cellular_component|GO:0005575||ND  go_process inositol biosynthetic process|GO:0006021|12228386|IDA  go_process inositol biosynthetic process|GO:0006021||ISS  go_process phospholipid biosynthetic process|GO:0008654||ISS  go_process myo-inositol hexakisphosphate biosynthetic process|GO:0010264|18643983|IMP  go_function inositol-3-phosphate synthase activity|GO:0004512|12228386|IDA  go_function inositol-3-phosphate synthase activity|GO:0004512|8058832|ISS  go_function inositol-3-phosphate synthase activity|GO:0004512||ISS  product MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1); inositol-3-phosphate synthase  note MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1 (MIPS1); FUNCTIONS IN: inositol-3-phosphate synthase activity; INVOLVED IN: myo-inositol hexakisphosphate biosynthetic process, inositol biosynthetic process, phospholipid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Myo-inositol-1-phosphate synthase (InterPro:IPR002587), Myo-inositol-1-phosphate synthase, GAPDH-like (InterPro:IPR013021), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2); binding / catalytic/ inositol-3-phosphate synthase (TAIR:AT2G22240.1); Has 862 Blast hits to 858 proteins in 289 species: Archae - 52; Bacteria - 210; Metazoa - 114; Fungi - 111; Plants - 127; Viruses - 0; Other Eukaryotes - 248 (source: NCBI BLink).  protein_id AT4G39800.1p  transcript_id AT4G39800.1  protein_id AT4G39800.1p  transcript_id AT4G39800.1  
At4g39810	chr4:018475298	0.0	C/18475298-18475735,18475170-18475216,18475024-18475087,18474794-18474919,18474608-18474700	AT4G39810.1  CDS  gene_syn T5J17.11  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function exonuclease activity|GO:0004527||IEA  go_component intracellular|GO:0005622||ISS  go_process biological_process|GO:0008150||ND  go_function exonuclease activity|GO:0004527||ISS  product exonuclease/ nucleic acid binding  note exonuclease/ nucleic acid binding; FUNCTIONS IN: exonuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T and DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: exonuclease family protein (TAIR:AT1G74390.1); Has 764 Blast hits to 764 proteins in 293 species: Archae - 0; Bacteria - 574; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 158 (source: NCBI BLink).  protein_id AT4G39810.1p  transcript_id AT4G39810.1  protein_id AT4G39810.1p  transcript_id AT4G39810.1  
At4g39820	chr4:018476698	0.0	C/18476698-18477924	AT4G39820.1  CDS  gene_syn T5J17.8  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); Has 225 Blast hits to 221 proteins in 90 species: Archae - 2; Bacteria - 18; Metazoa - 104; Fungi - 15; Plants - 24; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT4G39820.1p  transcript_id AT4G39820.1  protein_id AT4G39820.1p  transcript_id AT4G39820.1  
At4g39830	chr4:018479103	0.0	W/18479103-18479396,18479462-18479554,18479633-18479845,18479940-18480134,18480231-18481184	AT4G39830.1  CDS  gene_syn T5J17.9  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function copper ion binding|GO:0005507||IEA  go_function L-ascorbate oxidase activity|GO:0008447||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product L-ascorbate oxidase, putative  note L-ascorbate oxidase, putative; FUNCTIONS IN: oxidoreductase activity, L-ascorbate oxidase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117), L-ascorbate oxidase, plants (InterPro:IPR017760); BEST Arabidopsis thaliana protein match is: L-ascorbate oxidase, putative (TAIR:AT5G21100.1); Has 6939 Blast hits to 6011 proteins in 981 species: Archae - 36; Bacteria - 2851; Metazoa - 446; Fungi - 2420; Plants - 808; Viruses - 0; Other Eukaryotes - 378 (source: NCBI BLink).  protein_id AT4G39830.1p  transcript_id AT4G39830.1  protein_id AT4G39830.1p  transcript_id AT4G39830.1  
At4g39840	chr4:018485268	0.0	W/18485268-18486623	AT4G39840.1  CDS  gene_syn T5J17.10, T5J17_10  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 19942 Blast hits to 5309 proteins in 396 species: Archae - 16; Bacteria - 2054; Metazoa - 5068; Fungi - 2061; Plants - 165; Viruses - 122; Other Eukaryotes - 10456 (source: NCBI BLink).  protein_id AT4G39840.1p  transcript_id AT4G39840.1  protein_id AT4G39840.1p  transcript_id AT4G39840.1  
At4g39850	chr4:018489220	0.0	W/18489220-18489281,18489375-18489660,18489962-18490186,18490322-18490519,18490656-18491110,18491203-18491338,18491414-18491492,18491978-18492216,18492307-18492611,18492693-18492804,18492882-18493037,18493317-18493416,18493496-18493604,18493826-18493916,18494186-18494310,18494400-18494549,18494631-18494703,18494905-18495085,18495185-18495343,18495515-18495661,18495731-18495964,18496115-18496278,18496357-18496409,18496496-18496574,18496667-18496762	AT4G39850.1  CDS  gene_syn COMATOSE, CTS, PED3, PEROXISOMAL ABC TRANSPORTER 1, PEROXISOME DEFECTIVE 3, PXA1, T5J17.20, T5J17_20  gene PXA1  function Encodes a peroxisomal protein of the ATP binding cassette (ABC) transporter class (PMP subfamily) with significant identity to the human X-linked adrenoleukodystrophy protein (ALDP). The gene product promotes germination and represses embryo dormancy. ABI3, ABA1, FUS3 and LEC1 are epistatic to this gene. Mutants accumulate fatty acyl CoA suggesting a defect in uptake of fatty acyl CoA into the peroxisome.  go_component peroxisome|GO:0005777|12065405|IDA  go_process fatty acid beta-oxidation|GO:0006635|11706205|IMP  go_process fatty acyl coenzyme A transport|GO:0015916|12065405|IMP  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|11706205|ISS  product PXA1 (PEROXISOMAL ABC TRANSPORTER 1); ATPase, coupled to transmembrane movement of substances  note PEROXISOMAL ABC TRANSPORTER 1 (PXA1); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: fatty acyl coenzyme A transport, fatty acid beta-oxidation; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter, N-terminal (InterPro:IPR010509), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT1G54350.1); Has 166199 Blast hits to 132166 proteins in 2280 species: Archae - 2890; Bacteria - 118374; Metazoa - 6493; Fungi - 3495; Plants - 2018; Viruses - 3; Other Eukaryotes - 32926 (source: NCBI BLink).  protein_id AT4G39850.1p  transcript_id AT4G39850.1  protein_id AT4G39850.1p  transcript_id AT4G39850.1  
At4g39860	chr4:018499909	0.0	W/18499909-18500025,18500110-18500183,18500596-18500719,18500801-18501112,18501200-18501472	AT4G39860.1  CDS  gene_syn T5J17.30, T5J17_30  go_component nucleus|GO:0005634|15469496|IDA  go_component cytoplasm|GO:0005737|15469496|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G22270.1); Has 75 Blast hits to 75 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 71; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G39860.1p  transcript_id AT4G39860.1  protein_id AT4G39860.1p  transcript_id AT4G39860.1  
At4g39860	chr4:018499909	0.0	W/18499909-18500025,18500110-18500183,18500596-18500719,18500804-18501112,18501200-18501472	AT4G39860.2  CDS  gene_syn T5J17.30, T5J17_30  go_component nucleus|GO:0005634|15469496|IDA  go_component cytoplasm|GO:0005737|15469496|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G22270.1); Has 73 Blast hits to 73 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT4G39860.2p  transcript_id AT4G39860.2  protein_id AT4G39860.2p  transcript_id AT4G39860.2  
At4g39865	chr4:018501712	0.0	C/18501712-18501784	AT4G39865.1  tRNA  gene_syn 67223.TRNA-ARG-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: ACG)  transcript_id AT4G39865.1  
At4g39870	chr4:018502234	0.0	W/18502234-18502353,18502601-18503190,18503308-18503380,18503463-18503540,18503643-18503706,18503783-18503870,18503988-18504072,18504189-18504275	AT4G39870.1  CDS  gene_syn T5J17.40, T5J17_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TLDc (InterPro:IPR006571); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G05590.2); Has 2018 Blast hits to 1865 proteins in 220 species: Archae - 0; Bacteria - 39; Metazoa - 1002; Fungi - 279; Plants - 129; Viruses - 34; Other Eukaryotes - 535 (source: NCBI BLink).  protein_id AT4G39870.1p  transcript_id AT4G39870.1  protein_id AT4G39870.1p  transcript_id AT4G39870.1  
At4g39880	chr4:018504601	0.0	W/18504601-18505137	AT4G39880.1  CDS  gene_syn T5J17.50, T5J17_50  go_function nucleotide binding|GO:0000166||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L23 family protein  note ribosomal protein L23 family protein; FUNCTIONS IN: structural constituent of ribosome, nucleotide binding; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L23/L15e, core (InterPro:IPR012678), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ribosomal protein L25/L23 (InterPro:IPR013025); Has 2011 Blast hits to 2011 proteins in 690 species: Archae - 0; Bacteria - 1392; Metazoa - 5; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 592 (source: NCBI BLink).  protein_id AT4G39880.1p  transcript_id AT4G39880.1  protein_id AT4G39880.1p  transcript_id AT4G39880.1  
At4g39890	chr4:018506112	0.0	W/18506112-18506228,18506578-18506648,18506734-18506822,18506903-18507017,18507111-18507201,18507298-18507459	AT4G39890.1  CDS  gene_syn Arabidopsis Rab GTPase homolog H1c, AtRABH1c, T5J17.60, T5J17_60  gene AtRABH1c  go_component endomembrane system|GO:0012505||IEA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function protein binding|GO:0005515|18182439|IPI  go_function GTP binding|GO:0005525||ISS  product AtRABH1c (Arabidopsis Rab GTPase homolog H1c); GTP binding / protein binding  note Arabidopsis Rab GTPase homolog H1c (AtRABH1c); FUNCTIONS IN: protein binding, GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab6-related (InterPro:IPR015600); BEST Arabidopsis thaliana protein match is: ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D); GTP binding (TAIR:AT2G22290.1); Has 23210 Blast hits to 23184 proteins in 633 species: Archae - 15; Bacteria - 105; Metazoa - 12984; Fungi - 2714; Plants - 2201; Viruses - 19; Other Eukaryotes - 5172 (source: NCBI BLink).  protein_id AT4G39890.1p  transcript_id AT4G39890.1  protein_id AT4G39890.1p  transcript_id AT4G39890.1  
At4g39900	chr4:018510269	0.0	C/18510269-18510289,18509732-18509840,18509559-18509629,18509109-18509402,18508950-18508992,18508748-18508856,18508569-18508659	AT4G39900.1  CDS  gene_syn T5J17.70, T5J17_70  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 13 Blast hits to 13 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G39900.1p  transcript_id AT4G39900.1  protein_id AT4G39900.1p  transcript_id AT4G39900.1  
At4g39910	chr4:018514023	0.0	C/18514023-18514139,18513495-18513611,18513006-18513104,18512706-18512903,18512428-18512609,18511858-18512260	AT4G39910.1  CDS  gene_syn ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 3, ATUBP3, T5J17.80, T5J17_80, UBIQUITIN-SPECIFIC PROTEASE 3, UBP3  gene ATUBP3  function Encodes a nuclear ubiquitin-specific protease.  go_component nucleus|GO:0005634|9268021|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function ubiquitin-specific protease activity|GO:0004843|9268021|IDA  go_function ubiquitin-specific protease activity|GO:0004843||ISS  product ATUBP3 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 3); ubiquitin-specific protease  note ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 3 (ATUBP3); FUNCTIONS IN: ubiquitin-specific protease activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4); ubiquitin-specific protease (TAIR:AT2G22310.1); Has 6852 Blast hits to 5696 proteins in 184 species: Archae - 0; Bacteria - 4; Metazoa - 3843; Fungi - 1073; Plants - 495; Viruses - 3; Other Eukaryotes - 1434 (source: NCBI BLink).  protein_id AT4G39910.1p  transcript_id AT4G39910.1  protein_id AT4G39910.1p  transcript_id AT4G39910.1  
At4g39917	chr4:018515213	0.0	W/18515213-18515276,18515418-18515602	AT4G39917.1  CDS  gene_syn LCR45, Low-molecular-weight cysteine-rich 45  gene LCR45  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR45 (Low-molecular-weight cysteine-rich 45)  note Low-molecular-weight cysteine-rich 45 (LCR45); LOCATED IN: endomembrane system; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G39917.1p  transcript_id AT4G39917.1  protein_id AT4G39917.1p  transcript_id AT4G39917.1  
At4g39920	chr4:018515882	0.0	W/18515882-18516919	AT4G39920.1  CDS  gene_syn POR, PORCINO, T5J17.90, T5J17_90, TFC C, TUBULIN-FOLDING COFACTOR C  gene POR  function Microtubule-folding cofactor, produces assembly-competent alpha-/beta-tubulin heterodimers.  go_function binding|GO:0005488||IEA  go_component cytoplasm|GO:0005737|11959844|IDA  go_component cytoplasm|GO:0005737|12225668|IDA  go_component cytoplasm|GO:0005737|12225668|IMP  go_process cytokinesis|GO:0000910|11959844|IGI  go_process tubulin complex assembly|GO:0007021|11959844|ISS  go_process tubulin complex assembly|GO:0007021|12225668|IGI  go_process tubulin complex assembly|GO:0007021|12225668|ISS  product POR (PORCINO); binding  note PORCINO (POR); FUNCTIONS IN: binding; INVOLVED IN: tubulin complex assembly, cytokinesis; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CARP motif (InterPro:IPR006599), C-CAP/cofactor C-like domain (InterPro:IPR017901), Tubulin binding cofactor C (InterPro:IPR012945); Has 374 Blast hits to 372 proteins in 116 species: Archae - 0; Bacteria - 8; Metazoa - 195; Fungi - 52; Plants - 28; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).  protein_id AT4G39920.1p  transcript_id AT4G39920.1  protein_id AT4G39920.1p  transcript_id AT4G39920.1  
At4g39930	chr4:018518551	0.0	C/18518551-18518901	AT4G39930.1  CDS  gene_syn T5J17.100, T5J17_100  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G39930.1p  transcript_id AT4G39930.1  protein_id AT4G39930.1p  transcript_id AT4G39930.1  
At4g39940	chr4:018519787	0.0	W/18519787-18520018,18520162-18520458,18520600-18520718,18520817-18520901,18521052-18521098,18521175-18521276	AT4G39940.1  CDS  gene_syn ADENOSINE-5 -PHOSPHOSULFATE-KINASE, AKN2, APS-kinase 2, T5J17.110, T5J17_110  gene AKN2  function adenosine-5 -phosphosulfate-kinase (akn2) mRNA, complete  go_component chloroplast|GO:0009507|19304933|IDA  go_component plastid|GO:0009536|11488606|TAS  go_process sulfate assimilation|GO:0000103|19304933|IGI  go_process sulfate assimilation|GO:0000103||ISS  go_process regulation of glucosinolate biosynthetic process|GO:0010439|19304933|IGI  go_process phosphorylation|GO:0016310|11488606|IGI  go_function adenylylsulfate kinase activity|GO:0004020|11488606|IGI  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  go_function transferase activity, transferring phosphorus-containing groups|GO:0016772||ISS  product AKN2 (APS-kinase 2); ATP binding / adenylylsulfate kinase/ kinase/ transferase, transferring phosphorus-containing groups  note APS-kinase 2 (AKN2); FUNCTIONS IN: adenylylsulfate kinase activity, transferase activity, transferring phosphorus-containing groups, kinase activity, ATP binding; INVOLVED IN: regulation of glucosinolate biosynthetic process, sulfate assimilation, phosphorylation; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adenylylsulphate kinase, C-terminal (InterPro:IPR002891); BEST Arabidopsis thaliana protein match is: APK (APS KINASE); ATP binding / adenylylsulfate kinase/ kinase/ transferase, transferring phosphorus-containing groups (TAIR:AT2G14750.1); Has 3557 Blast hits to 3557 proteins in 927 species: Archae - 35; Bacteria - 1803; Metazoa - 221; Fungi - 202; Plants - 70; Viruses - 0; Other Eukaryotes - 1226 (source: NCBI BLink).  protein_id AT4G39940.1p  transcript_id AT4G39940.1  protein_id AT4G39940.1p  transcript_id AT4G39940.1  
At4g39950	chr4:018525311	0.0	W/18525311-18526303,18526652-18527284	AT4G39950.1  CDS  gene_syn CYP79B2, T5J17.120, T5J17_120  gene CYP79B2  function Belongs to cytochrome P450 and is involved in tryptophan metabolism. Converts Trp to indo-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates.  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component chloroplast|GO:0009507||NAS  go_process tryptophan catabolic process|GO:0006569|10681464|IDA  go_process response to bacterium|GO:0009617|17573535|IEP  go_process indoleacetic acid biosynthetic process|GO:0009684|12464638|IGI  go_process indoleacetic acid biosynthetic process|GO:0009684|15772288|IMP  go_process camalexin biosynthetic process|GO:0010120|16167893|TAS  go_process defense response to bacterium|GO:0042742|19095898|IMP  go_process callose deposition in cell wall during defense response|GO:0052544|19095898|IMP  go_function oxygen binding|GO:0019825||ISS  product CYP79B2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP79B2; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: in 6 processes; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP79B3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT2G22330.1); Has 20529 Blast hits to 20443 proteins in 1141 species: Archae - 19; Bacteria - 1481; Metazoa - 9511; Fungi - 3453; Plants - 5422; Viruses - 0; Other Eukaryotes - 643 (source: NCBI BLink).  protein_id AT4G39950.1p  transcript_id AT4G39950.1  protein_id AT4G39950.1p  transcript_id AT4G39950.1  
At4g39952	chr4:018527680	0.0	W/18527680-18528743,18528777-18528904,18529019-18530007	AT4G39952.1  CDS  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G03580.1); Has 17195 Blast hits to 5201 proteins in 159 species: Archae - 2; Bacteria - 9; Metazoa - 155; Fungi - 95; Plants - 16588; Viruses - 0; Other Eukaryotes - 346 (source: NCBI BLink).  protein_id AT4G39952.1p  transcript_id AT4G39952.1  protein_id AT4G39952.1p  transcript_id AT4G39952.1  
At4g39955	chr4:018530573	0.0	W/18530573-18531196,18531557-18531649,18531739-18531806,18531887-18532088	AT4G39955.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase (TAIR:AT5G09430.1); Has 4172 Blast hits to 4170 proteins in 771 species: Archae - 36; Bacteria - 2809; Metazoa - 223; Fungi - 19; Plants - 212; Viruses - 0; Other Eukaryotes - 873 (source: NCBI BLink).  protein_id AT4G39955.1p  transcript_id AT4G39955.1  protein_id AT4G39955.1p  transcript_id AT4G39955.1  
At4g39960	chr4:018534194	0.0	W/18534194-18534303,18534396-18534537,18534638-18534695,18534850-18534892,18535169-18535217,18535299-18535382,18535463-18536320	AT4G39960.1  CDS  gene_syn T5J17.130, T5J17_130  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process protein folding|GO:0006457||IEA  go_process response to heat|GO:0009408||IEA  go_function ATP binding|GO:0005524||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock family protein  note DNAJ heat shock family protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding, ATP binding; INVOLVED IN: protein folding, response to heat; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), Heat shock protein DnaJ, cysteine-rich region (InterPro:IPR001305), Chaperone DnaJ (InterPro:IPR012724), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT2G22360.1); Has 21244 Blast hits to 20540 proteins in 2111 species: Archae - 132; Bacteria - 6466; Metazoa - 3849; Fungi - 1680; Plants - 1445; Viruses - 25; Other Eukaryotes - 7647 (source: NCBI BLink).  protein_id AT4G39960.1p  transcript_id AT4G39960.1  protein_id AT4G39960.1p  transcript_id AT4G39960.1  
At4g39970	chr4:018537956	0.0	C/18537956-18538429,18537832-18537876,18537708-18537758,18537546-18537620,18537428-18537461,18537273-18537328,18537120-18537179,18536979-18537038,18536840-18536886,18536678-18536726	AT4G39970.1  CDS  gene_syn T5J17.140, T5J17_140  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity|GO:0016787||ISS  product haloacid dehalogenase-like hydrolase family protein  note haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: haloacid dehalogenase-like hydrolase family protein (TAIR:AT3G48420.1); Has 6837 Blast hits to 6837 proteins in 1168 species: Archae - 45; Bacteria - 5119; Metazoa - 139; Fungi - 123; Plants - 195; Viruses - 3; Other Eukaryotes - 1213 (source: NCBI BLink).  protein_id AT4G39970.1p  transcript_id AT4G39970.1  protein_id AT4G39970.1p  transcript_id AT4G39970.1  
At4g39980	chr4:018539654	0.0	W/18539654-18540178,18540249-18540526,18540638-18540914,18541250-18541495,18541581-18541832	AT4G39980.1  CDS  gene_syn 3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE 1, DHS1, T5J17.150, T5J17_150  gene DHS1  function Encodes a 2-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase, which catalyzes the first committed step in aromatic amino acid biosynthesis. Gene expression is induced by wounding and pathogenic bacteria Pseudomonas syringae.  go_component chloroplast|GO:0009507|12177500|TAS  go_component chloroplast|GO:0009507|1681544|TAS  go_process aromatic amino acid family biosynthetic process|GO:0009073|12177500|TAS  go_process aromatic amino acid family biosynthetic process|GO:0009073|1681544|TAS  go_process chorismate biosynthetic process|GO:0009423|12177500|IDA  go_process chorismate biosynthetic process|GO:0009423|1681544|IGI  go_process response to wounding|GO:0009611|1681544|IEP  go_process response to wounding|GO:0009611|17675405|IEP  go_process response to bacterium|GO:0009617|1681544|IEP  go_process defense response to bacterium|GO:0042742|1681544|IEP  go_function 3-deoxy-7-phosphoheptulonate synthase activity|GO:0003849|12177500|IDA  go_function 3-deoxy-7-phosphoheptulonate synthase activity|GO:0003849|1681544|IGI  go_function 3-deoxy-7-phosphoheptulonate synthase activity|GO:0003849|9539444|TAS  product DHS1 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE 1); 3-deoxy-7-phosphoheptulonate synthase  note 3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE 1 (DHS1); FUNCTIONS IN: 3-deoxy-7-phosphoheptulonate synthase activity; INVOLVED IN: defense response to bacterium, chorismate biosynthetic process, aromatic amino acid family biosynthetic process, response to wounding, response to bacterium; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase, class II (InterPro:IPR002480); BEST Arabidopsis thaliana protein match is: 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative (TAIR:AT1G22410.1); Has 3141 Blast hits to 3128 proteins in 396 species: Archae - 0; Bacteria - 664; Metazoa - 0; Fungi - 68; Plants - 130; Viruses - 0; Other Eukaryotes - 2279 (source: NCBI BLink).  protein_id AT4G39980.1p  transcript_id AT4G39980.1  protein_id AT4G39980.1p  transcript_id AT4G39980.1  
At4g39985	chr4:018542171	0.0	W/18542171-18542244	AT4G39985.1  tRNA  gene_syn 67223.TRNA-ILE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ile (anticodon: AAT)  transcript_id AT4G39985.1  
At4g39986	chr4:018542349	0.0	C/18542349-18542465	AT4G39986.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G39986.1p  transcript_id AT4G39986.1  protein_id AT4G39986.1p  transcript_id AT4G39986.1  
At4g39990	chr4:018542722	0.0	W/18542722-18542954,18543338-18543779	AT4G39990.1  CDS  gene_syn ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A 4B, ATGB3, ATRAB11G, ATRABA4B, GTP-BINDING PROTEIN 3, RAB GTPASE HOMOLOG A4B, RABA4B, T5J17.160, T5J17_160  gene RABA4B  function GTP-binding protein ATGB3  go_component plasma membrane|GO:0005886|17317660|IDA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product RABA4B (RAB GTPASE HOMOLOG A4B); GTP binding  note RAB GTPASE HOMOLOG A4B (RABA4B); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: AtRABA4a (Arabidopsis Rab GTPase homolog A4a); GTP binding (TAIR:AT5G65270.1); Has 23402 Blast hits to 23371 proteins in 637 species: Archae - 21; Bacteria - 111; Metazoa - 12899; Fungi - 3006; Plants - 2193; Viruses - 19; Other Eukaryotes - 5153 (source: NCBI BLink).  protein_id AT4G39990.1p  transcript_id AT4G39990.1  protein_id AT4G39990.1p  transcript_id AT4G39990.1  
At4g40000	chr4:018547279	0.0	C/18547279-18547443,18547112-18547200,18546958-18547024,18546770-18546885,18546637-18546703,18546510-18546558,18546341-18546426,18546004-18546260,18545861-18545916,18545701-18545786,18545532-18545624,18545178-18545451,18544580-18545100,18544256-18544490,18543989-18544179	AT4G40000.1  CDS  gene_syn T5J17.170, T5J17_170  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NOL1/NOP2/sun family protein  note NOL1/NOP2/sun family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678), Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site (InterPro:IPR018314); BEST Arabidopsis thaliana protein match is: NOL1/NOP2/sun family protein (TAIR:AT2G22400.1); Has 5412 Blast hits to 5388 proteins in 1279 species: Archae - 177; Bacteria - 3185; Metazoa - 533; Fungi - 201; Plants - 110; Viruses - 0; Other Eukaryotes - 1206 (source: NCBI BLink).  protein_id AT4G40000.1p  transcript_id AT4G40000.1  protein_id AT4G40000.1p  transcript_id AT4G40000.1  
At4g40010	chr4:018550937	0.0	C/18550937-18551056,18550772-18550846,18550136-18550237,18550003-18550056,18549813-18549905,18549627-18549719,18549397-18549501,18549160-18549258,18548704-18549015	AT4G40010.1  CDS  gene_syn SNF1-RELATED PROTEIN KINASE 2.7, SNRK2-7, SNRK2.7, SRK2F, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-7, T5J17.180, T5J17_180  gene SNRK2.7  function encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress.  go_component cytosol|GO:0005829|18433157|IDA  go_process response to osmotic stress|GO:0006970|15292193|IDA  go_process response to salt stress|GO:0009651|15292193|IDA  go_function kinase activity|GO:0016301|15292193|IDA  go_function kinase activity|GO:0016301||ISS  product SNRK2.7 (SNF1-RELATED PROTEIN KINASE 2.7); kinase  note SNF1-RELATED PROTEIN KINASE 2.7 (SNRK2.7); FUNCTIONS IN: kinase activity; INVOLVED IN: response to salt stress, response to osmotic stress; LOCATED IN: cytosol; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Plant protein serine/threonine kinase-like (InterPro:IPR015740), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: OST1 (OPEN STOMATA 1); calcium-dependent protein serine/threonine kinase/ kinase/ protein kinase (TAIR:AT4G33950.1); Has 83766 Blast hits to 82443 proteins in 2427 species: Archae - 53; Bacteria - 7393; Metazoa - 36525; Fungi - 8127; Plants - 14696; Viruses - 455; Other Eukaryotes - 16517 (source: NCBI BLink).  protein_id AT4G40010.1p  transcript_id AT4G40010.1  protein_id AT4G40010.1p  transcript_id AT4G40010.1  
At4g40011	chr4:018551198	0.0	C/18551198-18551404	AT4G40011.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT4G40011.1p  transcript_id AT4G40011.1  protein_id AT4G40011.1p  transcript_id AT4G40011.1  
At4g40020	chr4:018553453	0.0	C/18553453-18555300	AT4G40020.1  CDS  gene_syn T5J17.190, T5J17_190  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, sepal, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16730.1); Has 132649 Blast hits to 67638 proteins in 2100 species: Archae - 1327; Bacteria - 14625; Metazoa - 60192; Fungi - 9993; Plants - 4794; Viruses - 552; Other Eukaryotes - 41166 (source: NCBI BLink).  protein_id AT4G40020.1p  transcript_id AT4G40020.1  protein_id AT4G40020.1p  transcript_id AT4G40020.1  
At4g40030	chr4:018556346	0.0	C/18556346-18556417,18556187-18556263,18555840-18556101	AT4G40030.1  CDS  gene_syn T5J17.200, T5J17_200  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product histone H3.2  note histone H3.2; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H3 (TAIR:AT5G10980.1); Has 10278 Blast hits to 10275 proteins in 5329 species: Archae - 0; Bacteria - 0; Metazoa - 7397; Fungi - 1307; Plants - 999; Viruses - 0; Other Eukaryotes - 575 (source: NCBI BLink).  protein_id AT4G40030.1p  transcript_id AT4G40030.1  protein_id AT4G40030.1p  transcript_id AT4G40030.1  
At4g40030	chr4:018556346	0.0	C/18556346-18556417,18556187-18556263,18555840-18556101	AT4G40030.3  CDS  gene_syn T5J17.200, T5J17_200  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product histone H3.2  note histone H3.2; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H3 (TAIR:AT5G10980.1); Has 10278 Blast hits to 10275 proteins in 5329 species: Archae - 0; Bacteria - 0; Metazoa - 7397; Fungi - 1307; Plants - 999; Viruses - 0; Other Eukaryotes - 575 (source: NCBI BLink).  protein_id AT4G40030.3p  transcript_id AT4G40030.3  protein_id AT4G40030.3p  transcript_id AT4G40030.3  
At4g40030	chr4:018556744	0.0	C/18556744-18556827,18556346-18556417,18556187-18556263,18555840-18556101	AT4G40030.2  CDS  gene_syn T5J17.200, T5J17_200  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product histone H3.2  note histone H3.2; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H3 (TAIR:AT5G10980.1); Has 10278 Blast hits to 10275 proteins in 5329 species: Archae - 0; Bacteria - 0; Metazoa - 7397; Fungi - 1307; Plants - 999; Viruses - 0; Other Eukaryotes - 575 (source: NCBI BLink).  protein_id AT4G40030.2p  transcript_id AT4G40030.2  protein_id AT4G40030.2p  transcript_id AT4G40030.2  
At4g40040	chr4:018558165	0.0	C/18558165-18558236,18558001-18558077,18557808-18557898,18557539-18557709	AT4G40040.1  CDS  gene_syn T5J17.210  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product histone H3.2  note histone H3.2; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H3 (TAIR:AT5G10980.1); Has 10278 Blast hits to 10275 proteins in 5329 species: Archae - 0; Bacteria - 0; Metazoa - 7397; Fungi - 1307; Plants - 999; Viruses - 0; Other Eukaryotes - 575 (source: NCBI BLink).  protein_id AT4G40040.1p  transcript_id AT4G40040.1  protein_id AT4G40040.1p  transcript_id AT4G40040.1  
At4g40040	chr4:018558165	0.0	C/18558165-18558236,18558001-18558077,18557808-18557898,18557539-18557709	AT4G40040.2  CDS  gene_syn T5J17.210  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product histone H3.2  note histone H3.2; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H3 (TAIR:AT5G10980.1); Has 10278 Blast hits to 10275 proteins in 5329 species: Archae - 0; Bacteria - 0; Metazoa - 7397; Fungi - 1307; Plants - 999; Viruses - 0; Other Eukaryotes - 575 (source: NCBI BLink).  protein_id AT4G40040.2p  transcript_id AT4G40040.2  protein_id AT4G40040.2p  transcript_id AT4G40040.2  
At4g40042	chr4:018559289	0.0	W/18559289-18559570	AT4G40042.1  CDS  go_component signal peptidase complex|GO:0005787||IEA  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process signal peptide processing|GO:0006465||IEA  go_function peptidase activity|GO:0008233||IEA  product peptidase  note peptidase; FUNCTIONS IN: peptidase activity; INVOLVED IN: signal peptide processing; LOCATED IN: endomembrane system, integral to membrane, signal peptidase complex; CONTAINS InterPro DOMAIN/s: Microsomal signal peptidase 12 kDa subunit (InterPro:IPR009542); BEST Arabidopsis thaliana protein match is: peptidase (TAIR:AT2G22425.2); Has 218 Blast hits to 218 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 103; Fungi - 56; Plants - 39; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT4G40042.1p  transcript_id AT4G40042.1  protein_id AT4G40042.1p  transcript_id AT4G40042.1  
At4g40045	chr4:018559926	0.0	C/18559926-18560348	AT4G40045.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 11 Blast hits to 11 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G40045.1p  transcript_id AT4G40045.1  protein_id AT4G40045.1p  transcript_id AT4G40045.1  
At4g40050	chr4:018563242	0.0	C/18563242-18563727,18562957-18563163,18562619-18562861,18562452-18562518,18562167-18562361,18561993-18562084,18561699-18561884,18561473-18561609,18561206-18561392	AT4G40050.1  CDS  gene_syn T5J17.220, T5J17_220  go_function signal transducer activity|GO:0004871||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product signal transducer  note signal transducer; FUNCTIONS IN: signal transducer activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP013022 (InterPro:IPR016607), Regulator of G protein signalling (InterPro:IPR000342); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03570.1); Has 151 Blast hits to 147 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 99; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT4G40050.1p  transcript_id AT4G40050.1  protein_id AT4G40050.1p  transcript_id AT4G40050.1  
At4g40060	chr4:018572720	0.0	C/18572720-18572774,18572215-18572600,18571682-18572125	AT4G40060.1  CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 16, ATHB-16, ATHB16, T5J17.230, T5J17_230  gene ATHB16  function Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to blue light|GO:0009637|14623244|IMP  go_process negative regulation of cell growth|GO:0030308|14623244|IMP  go_process positive regulation of transcription|GO:0045941|16055682|IDA  go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|14623244|IMP  go_process photoperiodism, flowering|GO:0048573|14623244|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||NAS  go_function transcription activator activity|GO:0016563|16055682|IDA  go_function sequence-specific DNA binding|GO:0043565|11247607|IDA  product ATHB16 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 16); sequence-specific DNA binding / transcription activator/ transcription factor  note ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 16 (ATHB16); FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding, transcription activator activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ATHB6; DNA binding / protein binding / sequence-specific DNA binding / transcription activator/ transcription factor (TAIR:AT2G22430.1); Has 7930 Blast hits to 7911 proteins in 448 species: Archae - 2; Bacteria - 2; Metazoa - 6548; Fungi - 151; Plants - 1090; Viruses - 5; Other Eukaryotes - 132 (source: NCBI BLink).  protein_id AT4G40060.1p  transcript_id AT4G40060.1  protein_id AT4G40060.1p  transcript_id AT4G40060.1  
At4g40065	chr4:018574503	0.0	C/18574503-18575585	AT4G40065.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G40065.1  
At4g40070	chr4:018576533	0.0	W/18576533-18577504	AT4G40070.1  CDS  gene_syn T5J17.240, T5J17_240  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: ATL6; protein binding / zinc ion binding (TAIR:AT3G05200.1); Has 6611 Blast hits to 6592 proteins in 228 species: Archae - 0; Bacteria - 0; Metazoa - 2223; Fungi - 509; Plants - 2677; Viruses - 63; Other Eukaryotes - 1139 (source: NCBI BLink).  protein_id AT4G40070.1p  transcript_id AT4G40070.1  protein_id AT4G40070.1p  transcript_id AT4G40070.1  
At4g40085	chr4:018579242	0.0	C/18579242-18580377	AT4G40085.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT4G40080  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G40085.1  
At4g40085	chr4:018579242	0.0	C/18579242-18580377	AT4G40085.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT4G40080  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT4G40085.2  
At4g40080	chr4:018579371	0.0	W/18579371-18579813,18579888-18580542	AT4G40080.1  CDS  gene_syn T5J17.250, T5J17_250  go_component chloroplast|GO:0009507||IEA  go_function phospholipid binding|GO:0005543||IEA  go_process biological_process|GO:0008150||ND  go_function binding|GO:0005488||ISS  product epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related  note epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related; FUNCTIONS IN: phospholipid binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (TAIR:AT5G10410.1); Has 319 Blast hits to 319 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 143; Fungi - 0; Plants - 172; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT4G40080.1p  transcript_id AT4G40080.1  protein_id AT4G40080.1p  transcript_id AT4G40080.1  
At4g40090	chr4:018581085	0.0	C/18581085-18581504	AT4G40090.1  CDS  gene_syn AGP3, T5J17.1, T5J17_1, arabinogalactan-protein 3  gene AGP3  go_component endomembrane system|GO:0012505||IEA  go_process multicellular organismal development|GO:0007275|12177459|TAS  product AGP3 (arabinogalactan-protein 3)  note arabinogalactan-protein 3 (AGP3); INVOLVED IN: multicellular organismal development; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, hypocotyl, root; Has 28 Blast hits to 28 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT4G40090.1p  transcript_id AT4G40090.1  protein_id AT4G40090.1p  transcript_id AT4G40090.1  
At4g40100	chr4:018583244	0.0	W/18583244-18583457,18583547-18583648,18583910-18584079,18584333-18584524	AT4G40100.1  CDS  gene_syn T5J17.2, T5J17_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ABA-responsive protein-related  note ABA-responsive protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182); BEST Arabidopsis thaliana protein match is: GEM (GL2-EXPRESSION MODULATOR) (TAIR:AT2G22475.1); Has 195 Blast hits to 195 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 194; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT4G40100.1p  transcript_id AT4G40100.1  protein_id AT4G40100.1p  transcript_id AT4G40100.1  >Feature ref|NC_003076|  
At5g01010	chr5:000004765	0.0	C/4765-4924,4552-4679,4335-4467,4102-4258,3927-4005,3762-3802,3543-3659,3303-3383,2872-2934,2748-2799,2435-2509,1914-1961,1745-1780,1527-1646	AT5G01010.3  CDS  gene_syn TOPTELOMERE.1, TOPTELOMERE_1  product unknown protein  note EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038).  protein_id AT5G01010.3p  transcript_id AT5G01010.3  protein_id AT5G01010.3p  transcript_id AT5G01010.3  
At5g01010	chr5:000004765	0.0	C/4765-4924,4552-4679,4335-4467,4102-4258,3927-4005,3762-3802,3543-3659,3303-3383,2872-2934,2748-2799,2435-2509,1914-1961,1745-1780,1572-1646,1388-1459	AT5G01010.1  CDS  gene_syn TOPTELOMERE.1, TOPTELOMERE_1  product unknown protein  note EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038); Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G01010.1p  transcript_id AT5G01010.1  protein_id AT5G01010.1p  transcript_id AT5G01010.1  
At5g01010	chr5:000004765	0.0	C/4765-4924,4552-4679,4335-4467,4102-4258,3927-4005,3762-3802,3543-3659,3303-3383,2872-2934,2748-2799,2435-2509,2105-2181,1914-2007,1745-1780,1572-1646,1388-1459	AT5G01010.2  CDS  gene_syn TOPTELOMERE.1, TOPTELOMERE_1  product unknown protein  note EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038).  protein_id AT5G01010.2p  transcript_id AT5G01010.2  protein_id AT5G01010.2p  transcript_id AT5G01010.2  
At5g01015	chr5:000005697	0.0	C/5697-5769,5335-5576	AT5G01015.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65295.1); Has 54 Blast hits to 54 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G01015.1p  transcript_id AT5G01015.1  protein_id AT5G01015.1p  transcript_id AT5G01015.1  
At5g01020	chr5:000008216	0.0	C/8216-8270,7705-8139,7440-7576,7212-7335,6309-6790	AT5G01020.1  CDS  gene_syn F7J8.5, F7J8_5  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT2G05940.1); Has 84930 Blast hits to 83819 proteins in 2999 species: Archae - 48; Bacteria - 7829; Metazoa - 37401; Fungi - 6493; Plants - 18635; Viruses - 347; Other Eukaryotes - 14177 (source: NCBI BLink).  protein_id AT5G01020.1p  transcript_id AT5G01020.1  protein_id AT5G01020.1p  transcript_id AT5G01020.1  
At5g01030	chr5:000010638	0.0	W/10638-12665,12797-13003	AT5G01030.1  CDS  gene_syn F7J8.10, F7J8_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37930.1); Has 197 Blast hits to 166 proteins in 52 species: Archae - 0; Bacteria - 50; Metazoa - 33; Fungi - 23; Plants - 68; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT5G01030.1p  transcript_id AT5G01030.1  protein_id AT5G01030.1p  transcript_id AT5G01030.1  
At5g01030	chr5:000010638	0.0	W/10638-12665,12797-13003	AT5G01030.2  CDS  gene_syn F7J8.10, F7J8_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37930.1); Has 197 Blast hits to 166 proteins in 52 species: Archae - 0; Bacteria - 50; Metazoa - 33; Fungi - 23; Plants - 68; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT5G01030.2p  transcript_id AT5G01030.2  protein_id AT5G01030.2p  transcript_id AT5G01030.2  
At5g01040	chr5:000016044	0.0	C/16044-16142,15579-15730,15191-15435,14764-14874,13703-14665,13394-13578	AT5G01040.1  CDS  gene_syn F7J8.20, F7J8_20, LAC8, laccase 8  gene LAC8  function putative laccase, knockout mutant showed early flowering  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process vegetative to reproductive phase transition|GO:0010228|16804053|IMP  go_function laccase activity|GO:0008471|15940465|ISS  product LAC8 (laccase 8); laccase  note laccase 8 (LAC8); FUNCTIONS IN: laccase activity; INVOLVED IN: vegetative to reproductive phase transition; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: fruit, flower, root; CONTAINS InterPro DOMAIN/s: Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase family protein / diphenol oxidase family protein (TAIR:AT5G01050.1); Has 6719 Blast hits to 5570 proteins in 894 species: Archae - 22; Bacteria - 2249; Metazoa - 492; Fungi - 2705; Plants - 894; Viruses - 0; Other Eukaryotes - 357 (source: NCBI BLink).  protein_id AT5G01040.1p  transcript_id AT5G01040.1  protein_id AT5G01040.1p  transcript_id AT5G01040.1  
At5g01050	chr5:000020714	0.0	C/20714-20812,20358-20509,19970-20214,19570-19680,18481-19449,18209-18393	AT5G01050.1  CDS  gene_syn F7J8.30, F7J8_30, LAC9  function putative laccase, a member of laccase family of genes (17 members in Arabidopsis).  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process lignin catabolic process|GO:0046274||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function laccase activity|GO:0008471|15940465|ISS  product laccase family protein / diphenol oxidase family protein  note laccase family protein / diphenol oxidase family protein; FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: flower, root; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: LAC8 (laccase 8); laccase (TAIR:AT5G01040.1); Has 6732 Blast hits to 5471 proteins in 865 species: Archae - 20; Bacteria - 2243; Metazoa - 462; Fungi - 2742; Plants - 894; Viruses - 0; Other Eukaryotes - 371 (source: NCBI BLink).  protein_id AT5G01050.1p  transcript_id AT5G01050.1  protein_id AT5G01050.1p  transcript_id AT5G01050.1  
At5g01060	chr5:000022740	0.0	W/22740-23054,23136-23271,23359-23492,23580-23771,23858-24079,24181-24336,24412-24525,24617-24847	AT5G01060.1  CDS  gene_syn F7J8.40, F7J8_40  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function binding|GO:0005488||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: binding, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, cotyledon, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase-related (TAIR:AT3G09240.1); Has 22433 Blast hits to 22106 proteins in 824 species: Archae - 11; Bacteria - 1272; Metazoa - 6861; Fungi - 248; Plants - 12292; Viruses - 83; Other Eukaryotes - 1666 (source: NCBI BLink).  protein_id AT5G01060.1p  transcript_id AT5G01060.1  protein_id AT5G01060.1p  transcript_id AT5G01060.1  
At5g01070	chr5:000025425	0.0	C/25425-25799	AT5G01070.1  CDS  gene_syn F7J8.50, F7J8_50  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G37950.1); Has 116 Blast hits to 116 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 112; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G01070.1p  transcript_id AT5G01070.1  protein_id AT5G01070.1p  transcript_id AT5G01070.1  
At5g01070	chr5:000025429	0.0	C/25429-25799,25094-25343	AT5G01070.2  CDS  gene_syn F7J8.50, F7J8_50  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G05830.1).  protein_id AT5G01070.2p  transcript_id AT5G01070.2  protein_id AT5G01070.2p  transcript_id AT5G01070.2  
At5g01075	chr5:000027351	0.0	C/27351-27423,27095-27267	AT5G01075.1  CDS  go_component beta-galactosidase complex|GO:0009341||IEA  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  product beta-galactosidase  note beta-galactosidase; FUNCTIONS IN: beta-galactosidase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system, beta-galactosidase complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944); Has 8 Blast hits to 8 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G01075.1p  transcript_id AT5G01075.1  protein_id AT5G01075.1p  transcript_id AT5G01075.1  
At5g01080	chr5:000028532	0.0	C/28532-29086	AT5G01080.1  CDS  gene_syn F7J8.60, F7J8_60  go_component beta-galactosidase complex|GO:0009341||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  product beta-galactosidase  note beta-galactosidase; FUNCTIONS IN: beta-galactosidase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: beta-galactosidase complex; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944); BEST Arabidopsis thaliana protein match is: beta-galactosidase (TAIR:AT5G35760.1); Has 35 Blast hits to 35 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G01080.1p  transcript_id AT5G01080.1  protein_id AT5G01080.1p  transcript_id AT5G01080.1  
At5g01090	chr5:000033055	0.0	W/33055-34116	AT5G01090.1  CDS  gene_syn F7J8.70, F7J8_70  go_component endomembrane system|GO:0012505||IEA  go_function sugar binding|GO:0005529||IEA  go_process biological_process|GO:0008150||ND  go_function carbohydrate binding|GO:0030246||ISS  product legume lectin family protein  note legume lectin family protein; FUNCTIONS IN: carbohydrate binding, sugar binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: legume lectin family protein (TAIR:AT3G09035.1); Has 738 Blast hits to 733 proteins in 51 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 730; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G01090.1p  transcript_id AT5G01090.1  protein_id AT5G01090.1p  transcript_id AT5G01090.1  
At5g01100	chr5:000037196	0.0	C/37196-37756,36656-36725,36497-36567,36327-36415,36122-36254,35787-36019,35219-35695,34872-35133	AT5G01100.1  CDS  gene_syn F7J8.80, F7J8_80  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37980.1); Has 427 Blast hits to 424 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 426; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G01100.1p  transcript_id AT5G01100.1  protein_id AT5G01100.1p  transcript_id AT5G01100.1  
At5g01110	chr5:000042114	0.0	C/42114-44303	AT5G01110.1  CDS  gene_syn F7J8.90, F7J8_90  go_component chloroplast|GO:0009507||IEA  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT1G05670.2); Has 28807 Blast hits to 6228 proteins in 193 species: Archae - 4; Bacteria - 24; Metazoa - 956; Fungi - 844; Plants - 25427; Viruses - 0; Other Eukaryotes - 1552 (source: NCBI BLink).  protein_id AT5G01110.1p  transcript_id AT5G01110.1  protein_id AT5G01110.1p  transcript_id AT5G01110.1  
At5g01120	chr5:000045281	0.0	W/45281-45928,46012-46761,46852-46986	AT5G01120.1  CDS  gene_syn F7J8.100, F7J8_100  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF674 (InterPro:IPR007750); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G43240.3); Has 218 Blast hits to 124 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 218; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G01120.1p  transcript_id AT5G01120.1  protein_id AT5G01120.1p  transcript_id AT5G01120.1  
At5g01130	chr5:000047642	0.0	W/47642-48253,48355-49005,49079-49174	AT5G01130.1  CDS  gene_syn F7J8.110, F7J8_110  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF674 (InterPro:IPR007750); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01150.1); Has 190 Blast hits to 123 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 190; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G01130.1p  transcript_id AT5G01130.1  protein_id AT5G01130.1p  transcript_id AT5G01130.1  
At5g01140	chr5:000049891	0.0	W/49891-49975,50024-51222,51300-51437	AT5G01140.1  CDS  gene_syn F7J8.120, F7J8_120  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF674 (InterPro:IPR007750); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01150.1); Has 199 Blast hits to 123 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 197; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G01140.1p  transcript_id AT5G01140.1  protein_id AT5G01140.1p  transcript_id AT5G01140.1  
At5g01150	chr5:000051988	0.0	W/51988-52623,52708-53439,53512-53649	AT5G01150.1  CDS  gene_syn F7J8.130, F7J8_130  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF674 (InterPro:IPR007750); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01130.1); Has 188 Blast hits to 125 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 188; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G01150.1p  transcript_id AT5G01150.1  protein_id AT5G01150.1p  transcript_id AT5G01150.1  
At5g01160	chr5:000054280	0.0	W/54280-54534,54657-54715,54959-55727	AT5G01160.1  CDS  gene_syn F7J8.140, F7J8_140  go_component intracellular|GO:0005622||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product e-cadherin binding protein-related  note e-cadherin binding protein-related; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C2H2-type (InterPro:IPR007087); Has 408 Blast hits to 402 proteins in 106 species: Archae - 0; Bacteria - 13; Metazoa - 226; Fungi - 57; Plants - 47; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT5G01160.1p  transcript_id AT5G01160.1  protein_id AT5G01160.1p  transcript_id AT5G01160.1  
At5g01170	chr5:000058315	0.0	W/58315-60021	AT5G01170.1  CDS  gene_syn F7J8.150, F7J8_150  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF740 (InterPro:IPR008004); BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G09070.1); Has 822 Blast hits to 767 proteins in 109 species: Archae - 0; Bacteria - 26; Metazoa - 389; Fungi - 59; Plants - 135; Viruses - 31; Other Eukaryotes - 182 (source: NCBI BLink).  protein_id AT5G01170.1p  transcript_id AT5G01170.1  protein_id AT5G01170.1p  transcript_id AT5G01170.1  
At5g01175	chr5:000060208	0.0	W/60208-61214	AT5G01175.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT5G01180  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G01175.1  
At5g01180	chr5:000063132	0.0	C/63132-63240,62818-63035,62166-62716,61257-62091	AT5G01180.1  CDS  gene_syn ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, ATPTR5, F7J8.160, F7J8_160, PEPTIDE TRANSPORTER 5, PTR5  gene PTR5  function Encodes a dipeptide transporter expressed in pollen and ovules during early seed development. GFP-tagged PTR5 localizes to the plasma membrane.  go_component plasma membrane|GO:0005886|18753286|IDA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_process pollen tube growth|GO:0009860|18753286|IMP  go_process dipeptide transport|GO:0042938|18753286|IDA  go_function transporter activity|GO:0005215||ISS  go_function dipeptide transporter activity|GO:0042936|18753286|IDA  product PTR5 (PEPTIDE TRANSPORTER 5); dipeptide transporter/ transporter  note PEPTIDE TRANSPORTER 5 (PTR5); FUNCTIONS IN: dipeptide transporter activity, transporter activity; INVOLVED IN: dipeptide transport, oligopeptide transport, pollen tube growth; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region, conserved site (InterPro:IPR018456), TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: PTR1 (PEPTIDE TRANSPORTER 1); dipeptide transporter/ transporter/ tripeptide transporter (TAIR:AT3G54140.1); Has 4906 Blast hits to 4560 proteins in 809 species: Archae - 0; Bacteria - 2150; Metazoa - 692; Fungi - 311; Plants - 1153; Viruses - 0; Other Eukaryotes - 600 (source: NCBI BLink).  protein_id AT5G01180.1p  transcript_id AT5G01180.1  protein_id AT5G01180.1p  transcript_id AT5G01180.1  
At5g01185	chr5:000065275	0.0	C/65275-69924	AT5G01185.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.4e-123 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)  
At5g01190	chr5:000072392	0.0	W/72392-72481,72617-72768,72859-73103,73194-73322,73434-74363,74482-74612	AT5G01190.1  CDS  gene_syn F7J8.170, F7J8_170, LAC10, laccase 10  gene LAC10  function putative laccase, a member of laccase family of genes (17 members in Arabidopsis).  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process lignin catabolic process|GO:0046274||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function laccase activity|GO:0008471|15940465|ISS  product LAC10 (laccase 10); laccase  note laccase 10 (LAC10); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: IRX12 (IRREGULAR XYLEM 12); laccase (TAIR:AT2G38080.1); Has 6422 Blast hits to 5632 proteins in 882 species: Archae - 14; Bacteria - 2261; Metazoa - 406; Fungi - 2495; Plants - 895; Viruses - 0; Other Eukaryotes - 351 (source: NCBI BLink).  protein_id AT5G01190.1p  transcript_id AT5G01190.1  protein_id AT5G01190.1p  transcript_id AT5G01190.1  
At5g01200	chr5:000077116	0.0	W/77116-77576,77952-78294	AT5G01200.1  CDS  gene_syn F7J8.180, F7J8_180  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT2G38090.1); Has 956 Blast hits to 954 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 63; Fungi - 4; Plants - 805; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT5G01200.1p  transcript_id AT5G01200.1  protein_id AT5G01200.1p  transcript_id AT5G01200.1  
At5g01215	chr5:000084307	0.0	C/84307-85917	AT5G01215.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT5G01210  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G01215.1  
At5g01210	chr5:000084554	0.0	W/84554-85981	AT5G01210.1  CDS  gene_syn F7J8.190, F7J8_190  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT2G39980.1); Has 1194 Blast hits to 1183 proteins in 114 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 60; Plants - 1132; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G01210.1p  transcript_id AT5G01210.1  protein_id AT5G01210.1p  transcript_id AT5G01210.1  
At5g01215	chr5:000084736	0.0	C/84736-86215	AT5G01215.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT5G01210  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G01215.2  
At5g01220	chr5:000089539	0.0	C/89539-89885,89103-89169,88892-88962,88701-88818,88525-88598,88388-88443,88204-88287,88027-88114,87858-87935,87724-87780,87414-87630,86907-87182	AT5G01220.1  CDS  gene_syn F7J8.200, F7J8_200, SQD2, SULFOLIPID SYNTHASE, sulfoquinovosyldiacylglycerol 2  gene SQD2  function involved in sulfolipid biosynthesis  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process glycolipid biosynthetic process|GO:0009247|11960029|IDA  go_process cellular response to phosphate starvation|GO:0016036|11960029|IMP  go_process sulfolipid biosynthetic process|GO:0046506|11960029|TAS  go_function UDP-glycosyltransferase activity|GO:0008194|11960029|IDA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity|GO:0046510|11960029|IDA  product SQD2 (sulfoquinovosyldiacylglycerol 2); UDP-glycosyltransferase/ UDP-sulfoquinovose:DAG sulfoquinovosyltransferase/ transferase, transferring glycosyl groups  note sulfoquinovosyldiacylglycerol 2 (SQD2); FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups, UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity; INVOLVED IN: cellular response to phosphate starvation, sulfolipid biosynthetic process, glycolipid biosynthetic process; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: SETH2; transferase, transferring glycosyl groups (TAIR:AT3G45100.2); Has 23096 Blast hits to 23049 proteins in 1871 species: Archae - 760; Bacteria - 14508; Metazoa - 126; Fungi - 157; Plants - 1179; Viruses - 2; Other Eukaryotes - 6364 (source: NCBI BLink).  protein_id AT5G01220.1p  transcript_id AT5G01220.1  protein_id AT5G01220.1p  transcript_id AT5G01220.1  
At5g01225	chr5:000091920	0.0	W/91920-92324	AT5G01225.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09032.1); Has 12 Blast hits to 12 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G01225.1p  transcript_id AT5G01225.1  protein_id AT5G01225.1p  transcript_id AT5G01225.1  
At5g01230	chr5:000095354	0.0	C/95354-95380,95155-95248,94948-94997,94482-94531,94264-94372,94086-94146,93949-94001,93734-93826,93521-93584,93289-93396,92789-93009	AT5G01230.1  CDS  gene_syn F7J8.210, F7J8_210  go_process rRNA methylation|GO:0031167||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  go_function methyltransferase activity|GO:0008168||ISS  product FtsJ-like methyltransferase family protein  note FtsJ-like methyltransferase family protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: rRNA methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal RNA methyltransferase J (InterPro:IPR015507), Ribosomal RNA methyltransferase RrmJ/FtsJ (InterPro:IPR002877); BEST Arabidopsis thaliana protein match is: FtsJ-like methyltransferase family protein (TAIR:AT4G25730.1); Has 4341 Blast hits to 4312 proteins in 938 species: Archae - 101; Bacteria - 1436; Metazoa - 438; Fungi - 272; Plants - 53; Viruses - 63; Other Eukaryotes - 1978 (source: NCBI BLink).  protein_id AT5G01230.1p  transcript_id AT5G01230.1  protein_id AT5G01230.1p  transcript_id AT5G01230.1  
At5g01230	chr5:000095354	0.0	C/95354-95380,95155-95248,94948-94997,94694-94708	AT5G01230.2  CDS  gene_syn F7J8.210, F7J8_210  go_process rRNA methylation|GO:0031167||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  go_function methyltransferase activity|GO:0008168||ISS  product FtsJ-like methyltransferase family protein  note FtsJ-like methyltransferase family protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: rRNA methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal RNA methyltransferase J (InterPro:IPR015507), Ribosomal RNA methyltransferase RrmJ/FtsJ (InterPro:IPR002877); BEST Arabidopsis thaliana protein match is: FtsJ-like methyltransferase family protein (TAIR:AT4G25730.1); Has 3303 Blast hits to 3303 proteins in 845 species: Archae - 98; Bacteria - 1308; Metazoa - 281; Fungi - 235; Plants - 49; Viruses - 0; Other Eukaryotes - 1332 (source: NCBI BLink).  protein_id AT5G01230.2p  transcript_id AT5G01230.2  protein_id AT5G01230.2p  transcript_id AT5G01230.2  
At5g01240	chr5:000098228	0.0	W/98228-98419,98615-98803,98931-99043,99176-99359,99441-99538,100118-100325,100634-100891,101269-101493	AT5G01240.1  CDS  gene_syn F7J8.220, F7J8_220  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_function transporter activity|GO:0005215||ISS  product amino acid permease, putative  note amino acid permease, putative; FUNCTIONS IN: transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: AUX1 (AUXIN RESISTANT 1); amino acid transmembrane transporter/ auxin binding / auxin influx transmembrane transporter/ transporter (TAIR:AT2G38120.1); Has 669 Blast hits to 665 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 182; Plants - 381; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT5G01240.1p  transcript_id AT5G01240.1  protein_id AT5G01240.1p  transcript_id AT5G01240.1  
At5g01240	chr5:000098663	0.0	W/98663-98803,98931-99043,99176-99359,99441-99538,100118-100325,100634-100891,101269-101493	AT5G01240.2  CDS  gene_syn F7J8.220, F7J8_220  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_function transporter activity|GO:0005215||ISS  product amino acid permease, putative  note amino acid permease, putative; FUNCTIONS IN: transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: AUX1 (AUXIN RESISTANT 1); amino acid transmembrane transporter/ auxin binding / auxin influx transmembrane transporter/ transporter (TAIR:AT2G38120.1); Has 461 Blast hits to 457 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 68; Fungi - 50; Plants - 342; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G01240.2p  transcript_id AT5G01240.2  protein_id AT5G01240.2p  transcript_id AT5G01240.2  
At5g01250	chr5:000102370	0.0	C/102370-103593	AT5G01250.1  CDS  gene_syn F7J8.230, F7J8_230  go_component Golgi stack|GO:0005795||IEA  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing protein  note alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi stack; CONTAINS InterPro DOMAIN/s: Alpha 1,4-glycosyltransferase conserved region (InterPro:IPR007652), Glycosyltransferase sugar-binding region containing DXD motif (InterPro:IPR007577); BEST Arabidopsis thaliana protein match is: alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing protein (TAIR:AT3G09020.1); Has 281 Blast hits to 280 proteins in 55 species: Archae - 0; Bacteria - 14; Metazoa - 188; Fungi - 2; Plants - 51; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT5G01250.1p  transcript_id AT5G01250.1  protein_id AT5G01250.1p  transcript_id AT5G01250.1  
At5g01260	chr5:000105367	0.0	W/105367-105582,105697-105888,105976-106476,106797-107045	AT5G01260.2  CDS  gene_syn F7J8.240, F7J8_240  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function carbohydrate binding|GO:0030246||IEA  go_component cellular_component|GO:0005575||ND  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function catalytic activity|GO:0003824||ISS  product glycoside hydrolase starch-binding domain-containing protein  note glycoside hydrolase starch-binding domain-containing protein; FUNCTIONS IN: carbohydrate binding, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin-like fold (InterPro:IPR013783), Carbohydrate-binding-like fold (InterPro:IPR013784), Glycoside hydrolase, carbohydrate-binding (InterPro:IPR002044); BEST Arabidopsis thaliana protein match is: ATGWD3; carbohydrate kinase/ catalytic/ phosphoglucan, water dikinase (TAIR:AT5G26570.2); Has 380 Blast hits to 376 proteins in 110 species: Archae - 0; Bacteria - 123; Metazoa - 18; Fungi - 81; Plants - 84; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT5G01260.2p  transcript_id AT5G01260.2  protein_id AT5G01260.2p  transcript_id AT5G01260.2  
At5g01260	chr5:000105367	0.0	W/105367-105582,105697-105888,105976-106488	AT5G01260.1  CDS  gene_syn F7J8.240, F7J8_240  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function carbohydrate binding|GO:0030246||IEA  go_component cellular_component|GO:0005575||ND  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function catalytic activity|GO:0003824||ISS  product glycoside hydrolase starch-binding domain-containing protein  note glycoside hydrolase starch-binding domain-containing protein; FUNCTIONS IN: carbohydrate binding, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin-like fold (InterPro:IPR013783), Carbohydrate-binding-like fold (InterPro:IPR013784), Glycoside hydrolase, carbohydrate-binding (InterPro:IPR002044); BEST Arabidopsis thaliana protein match is: ATGWD3; carbohydrate kinase/ catalytic/ phosphoglucan, water dikinase (TAIR:AT5G26570.2); Has 344 Blast hits to 340 proteins in 97 species: Archae - 0; Bacteria - 109; Metazoa - 13; Fungi - 77; Plants - 84; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT5G01260.1p  transcript_id AT5G01260.1  protein_id AT5G01260.1p  transcript_id AT5G01260.1  
At5g01270	chr5:000111871	0.0	C/111871-112143,111308-111778,110932-111142,110497-110654,110330-110400,110133-110238,109954-110046,109705-109837,109285-109595,109159-109210,108768-108901,108636-108689,108451-108547,108163-108311	AT5G01270.1  CDS  gene_syn CARBOXYL-TERMINAL DOMAIN (CTD) PHOSPHATASE-LIKE 2, CPL2, F7J8.250, F7J8_250  gene CPL2  function Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses.  go_component intracellular|GO:0005622||IEA  go_process response to osmotic stress|GO:0006970|18506580|IMP  go_process response to auxin stimulus|GO:0009733|18506580|IMP  go_process developmental growth|GO:0048589|18506580|IMP  go_function double-stranded RNA binding|GO:0003725||ISS  go_function phosphatase activity|GO:0016791|18506580|IDA  product CPL2; double-stranded RNA binding / phosphatase  note CPL2; FUNCTIONS IN: phosphatase activity, double-stranded RNA binding; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: CPL1 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1); double-stranded RNA binding / nucleotide phosphatase (TAIR:AT4G21670.1); Has 144 Blast hits to 138 proteins in 52 species: Archae - 0; Bacteria - 6; Metazoa - 39; Fungi - 36; Plants - 52; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT5G01270.1p  transcript_id AT5G01270.1  protein_id AT5G01270.1p  transcript_id AT5G01270.1  
At5g01280	chr5:000116155	0.0	C/116155-116237,115604-115691,114465-115487,114185-114373	AT5G01280.1  CDS  gene_syn T10O8.1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Has 40332 Blast hits to 19265 proteins in 905 species: Archae - 97; Bacteria - 3595; Metazoa - 17370; Fungi - 8276; Plants - 837; Viruses - 1209; Other Eukaryotes - 8948 (source: NCBI BLink).  protein_id AT5G01280.1p  transcript_id AT5G01280.1  protein_id AT5G01280.1p  transcript_id AT5G01280.1  
At5g01290	chr5:000117520	0.0	W/117520-117618,117742-117859,117933-118084,118160-118243,118330-118392,118522-118656,118749-118955,119355-119474,119697-119746,119877-120039,120120-120260,120426-120533,120615-120713,120864-121172,121267-121392	AT5G01290.1  CDS  gene_syn T10O8.2  go_component nucleus|GO:0005634||IEA  go_process mRNA capping|GO:0006370||IEA  go_process mRNA processing|GO:0006397||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_process dephosphorylation|GO:0016311||IEA  go_function mRNA guanylyltransferase activity|GO:0004484||IEA  go_function polynucleotide 5 -phosphatase activity|GO:0004651||IEA  go_function protein tyrosine phosphatase activity|GO:0004725||IEA  go_function protein tyrosine/serine/threonine phosphatase activity|GO:0008138||IEA  go_function phosphatase activity|GO:0016791||IEA  go_process mRNA capping|GO:0006370||ISS  go_process mRNA processing|GO:0006397||ISS  go_function mRNA guanylyltransferase activity|GO:0004484||ISS  product mRNA guanylyltransferase/ phosphatase/ polynucleotide 5 -phosphatase/ protein tyrosine phosphatase/ protein tyrosine/serine/threonine phosphatase  note mRNA guanylyltransferase/ phosphatase/ polynucleotide 5 -phosphatase/ protein tyrosine phosphatase/ protein tyrosine/serine/threonine phosphatase; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity, mRNA guanylyltransferase activity, polynucleotide 5 -phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation, mRNA processing, mRNA capping, dephosphorylation; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Protein-tyrosine phosphatase (InterPro:IPR000387), mRNA capping enzyme (InterPro:IPR001339), mRNA capping enzyme, bifunctional (InterPro:IPR017074), Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Protein-tyrosine phosphatase, dual specificity (InterPro:IPR000340), mRNA capping enzyme, C-terminal (InterPro:IPR013846); BEST Arabidopsis thaliana protein match is: mRNA capping enzyme family protein (TAIR:AT3G09100.2); Has 687 Blast hits to 666 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 240; Fungi - 154; Plants - 41; Viruses - 65; Other Eukaryotes - 187 (source: NCBI BLink).  protein_id AT5G01290.1p  transcript_id AT5G01290.1  protein_id AT5G01290.1p  transcript_id AT5G01290.1  
At5g01300	chr5:000121817	0.0	C/121817-122128,121643-121717	AT5G01300.2  CDS  gene_syn T10O8.10, T10O8_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function phosphatidylethanolamine binding|GO:0008429||ISS  product phosphatidylethanolamine-binding family protein  note phosphatidylethanolamine-binding family protein; FUNCTIONS IN: phosphatidylethanolamine binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: YbhB and YbcL (InterPro:IPR005247), Phosphatidylethanolamine-binding protein PEBP (InterPro:IPR008914); Has 1182 Blast hits to 1182 proteins in 473 species: Archae - 74; Bacteria - 1009; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT5G01300.2p  transcript_id AT5G01300.2  protein_id AT5G01300.2p  transcript_id AT5G01300.2  
At5g01300	chr5:000122330	0.0	C/122330-122448,121817-122111,121643-121717	AT5G01300.1  CDS  gene_syn T10O8.10, T10O8_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function phosphatidylethanolamine binding|GO:0008429||ISS  product phosphatidylethanolamine-binding family protein  note phosphatidylethanolamine-binding family protein; FUNCTIONS IN: phosphatidylethanolamine binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: YbhB and YbcL (InterPro:IPR005247), Phosphatidylethanolamine-binding protein PEBP (InterPro:IPR008914); Has 1569 Blast hits to 1569 proteins in 571 species: Archae - 85; Bacteria - 1347; Metazoa - 0; Fungi - 2; Plants - 27; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT5G01300.1p  transcript_id AT5G01300.1  protein_id AT5G01300.1p  transcript_id AT5G01300.1  
At5g01310	chr5:000125304	0.0	W/125304-125805,126225-126502,126668-127539,127617-128214,128300-128470,128643-128960	AT5G01310.1  CDS  gene_syn T10O8.20, T10O8_20  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, nucleus, chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Appr-1-p processing (InterPro:IPR002589), Histidine triad (HIT) protein (InterPro:IPR001310), Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Histidine triad motif (InterPro:IPR011151), Helix-loop-helix DNA-binding (InterPro:IPR011598), Histidine triad-like motif (InterPro:IPR011146), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: HEC3 (HECATE 3); DNA binding / transcription factor (TAIR:AT5G09750.1); Has 1987 Blast hits to 1970 proteins in 250 species: Archae - 0; Bacteria - 133; Metazoa - 339; Fungi - 141; Plants - 1300; Viruses - 3; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT5G01310.1p  transcript_id AT5G01310.1  protein_id AT5G01310.1p  transcript_id AT5G01310.1  
At5g01320	chr5:000131107	0.0	C/131107-131625,130857-131020,130129-130779,129722-130028,129484-129654	AT5G01320.1  CDS  gene_syn T10O8.30, T10O8_30  go_function magnesium ion binding|GO:0000287||IEA  go_function catalytic activity|GO:0003824||IEA  go_function transferase activity|GO:0016740||IEA  go_function carboxy-lyase activity|GO:0016831||IEA  go_function thiamin pyrophosphate binding|GO:0030976||IEA  go_component cellular_component|GO:0005575||ND  go_function pyruvate decarboxylase activity|GO:0004737||ISS  product pyruvate decarboxylase, putative  note pyruvate decarboxylase, putative; FUNCTIONS IN: in 6 functions; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TPP-binding enzymes, conserved site (InterPro:IPR000399), Thiamine pyrophosphate enzyme, central region (InterPro:IPR012000), Pyruvate decarboxylase/indolepyruvate decarboxylase (InterPro:IPR012110), Thiamine pyrophosphate enzyme, N-terminal TPP binding region (InterPro:IPR012001), Thiamine pyrophosphate enzyme, C-terminal TPP-binding (InterPro:IPR011766); BEST Arabidopsis thaliana protein match is: pyruvate decarboxylase, putative (TAIR:AT4G33070.1); Has 14075 Blast hits to 14031 proteins in 1436 species: Archae - 238; Bacteria - 7299; Metazoa - 154; Fungi - 523; Plants - 435; Viruses - 2; Other Eukaryotes - 5424 (source: NCBI BLink).  protein_id AT5G01320.1p  transcript_id AT5G01320.1  protein_id AT5G01320.1p  transcript_id AT5G01320.1  
At5g01330	chr5:000134322	0.0	C/134322-134807,134093-134256,133369-134019,132790-133096,132538-132708	AT5G01330.1  CDS  gene_syn PDC3, PYRUVATE DECARBOXYLASE-3, T10O8.40, T10O8_40, pyruvate decarboxylase-3  gene PDC3  function pyruvate decarboxylase  go_function magnesium ion binding|GO:0000287||IEA  go_function catalytic activity|GO:0003824||IEA  go_function transferase activity|GO:0016740||IEA  go_function carboxy-lyase activity|GO:0016831||IEA  go_function thiamin pyrophosphate binding|GO:0030976||IEA  go_function pyruvate decarboxylase activity|GO:0004737||ISS  product PDC3 (pyruvate decarboxylase-3); carboxy-lyase/ catalytic/ magnesium ion binding / pyruvate decarboxylase/ thiamin pyrophosphate binding / transferase  note pyruvate decarboxylase-3 (PDC3); FUNCTIONS IN: in 6 functions; CONTAINS InterPro DOMAIN/s: TPP-binding enzymes, conserved site (InterPro:IPR000399), Thiamine pyrophosphate enzyme, central region (InterPro:IPR012000), Pyruvate decarboxylase/indolepyruvate decarboxylase (InterPro:IPR012110), Thiamine pyrophosphate enzyme, N-terminal TPP binding region (InterPro:IPR012001), Thiamine pyrophosphate enzyme, C-terminal TPP-binding (InterPro:IPR011766); BEST Arabidopsis thaliana protein match is: pyruvate decarboxylase, putative (TAIR:AT5G01320.1); Has 14156 Blast hits to 14086 proteins in 1432 species: Archae - 234; Bacteria - 7363; Metazoa - 155; Fungi - 513; Plants - 438; Viruses - 2; Other Eukaryotes - 5451 (source: NCBI BLink).  protein_id AT5G01330.1p  transcript_id AT5G01330.1  protein_id AT5G01330.1p  transcript_id AT5G01330.1  
At5g01335	chr5:000135831	0.0	W/135831-141287	AT5G01335.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 3.4e-29 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)  
At5g01340	chr5:000144172	0.0	C/144172-144561,143240-143779	AT5G01340.1  CDS  gene_syn T10O8.50, T10O8_50  go_component mitochondrial inner membrane|GO:0005743||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function binding|GO:0005488||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: transporter activity, binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: mitochondrial substrate carrier family protein (TAIR:AT2G37890.1); Has 17641 Blast hits to 9745 proteins in 355 species: Archae - 0; Bacteria - 0; Metazoa - 9246; Fungi - 4407; Plants - 2419; Viruses - 0; Other Eukaryotes - 1569 (source: NCBI BLink).  protein_id AT5G01340.1p  transcript_id AT5G01340.1  protein_id AT5G01340.1p  transcript_id AT5G01340.1  
At5g01350	chr5:000146832	0.0	C/146832-146911,146117-146178,145970-146028,145865-145882	AT5G01350.1  CDS  gene_syn T10O8.60, T10O8_60  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 22 Blast hits to 22 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G01350.1p  transcript_id AT5G01350.1  protein_id AT5G01350.1p  transcript_id AT5G01350.1  
At5g01360	chr5:000149118	0.0	C/149118-149316,148764-149004,148502-148673,148014-148376	AT5G01360.2  CDS  gene_syn T10O8.70, T10O8_70  product unknown protein  note EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: ESK1 (ESKIMO 1) (TAIR:AT3G55990.1); Has 688 Blast hits to 680 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 685; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G01360.2p  transcript_id AT5G01360.2  protein_id AT5G01360.2p  transcript_id AT5G01360.2  
At5g01360	chr5:000149118	0.0	C/149118-149316,148764-149004,148502-148673,148018-148376,147608-147941	AT5G01360.1  CDS  gene_syn T10O8.70, T10O8_70  product unknown protein  note EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: ESK1 (ESKIMO 1) (TAIR:AT3G55990.1); Has 710 Blast hits to 702 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 2; Plants - 705; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G01360.1p  transcript_id AT5G01360.1  protein_id AT5G01360.1p  transcript_id AT5G01360.1  
At5g01365	chr5:000150355	0.0	C/150355-150427	AT5G01365.1  tRNA  gene_syn 67571.TRNA-ALA-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: AGC)  transcript_id AT5G01365.1  
At5g01370	chr5:000152575	0.0	W/152575-153523,153961-154295	AT5G01370.1  CDS  gene_syn T10O8.80, T10O8_80  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; Has 1409 Blast hits to 1156 proteins in 159 species: Archae - 0; Bacteria - 100; Metazoa - 453; Fungi - 138; Plants - 56; Viruses - 1; Other Eukaryotes - 661 (source: NCBI BLink).  protein_id AT5G01370.1p  transcript_id AT5G01370.1  protein_id AT5G01370.1p  transcript_id AT5G01370.1  
At5g01380	chr5:000157116	0.0	C/157116-157451,155784-156419	AT5G01380.1  CDS  gene_syn T10O8.90, T10O8_90  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: DNA-binding protein-related (TAIR:AT2G38250.1); Has 3674 Blast hits to 2705 proteins in 225 species: Archae - 4; Bacteria - 130; Metazoa - 1607; Fungi - 386; Plants - 334; Viruses - 10; Other Eukaryotes - 1203 (source: NCBI BLink).  protein_id AT5G01380.1p  transcript_id AT5G01380.1  protein_id AT5G01380.1p  transcript_id AT5G01380.1  
At5g01390	chr5:000162035	0.0	C/162035-162199,161546-161949,160500-160938	AT5G01390.1  CDS  gene_syn T10O8.100, T10O8_100  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock protein, putative  note DNAJ heat shock protein, putative; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock protein, putative (TAIR:AT3G08910.1); Has 19804 Blast hits to 19727 proteins in 2084 species: Archae - 117; Bacteria - 5890; Metazoa - 3816; Fungi - 1693; Plants - 1446; Viruses - 15; Other Eukaryotes - 6827 (source: NCBI BLink).  protein_id AT5G01390.1p  transcript_id AT5G01390.1  protein_id AT5G01390.1p  transcript_id AT5G01390.1  
At5g01390	chr5:000162035	0.0	C/162035-162199,161546-161949,160853-160938,160500-160735	AT5G01390.4  CDS  gene_syn T10O8.100, T10O8_100  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock protein, putative  note DNAJ heat shock protein, putative; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock protein, putative (TAIR:AT3G08910.1).  protein_id AT5G01390.4p  transcript_id AT5G01390.4  protein_id AT5G01390.4p  transcript_id AT5G01390.4  
At5g01390	chr5:000162035	0.0	C/162035-162199,161720-161949,160500-160938	AT5G01390.2  CDS  gene_syn T10O8.100, T10O8_100  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock protein, putative  note DNAJ heat shock protein, putative; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock protein, putative (TAIR:AT3G08910.1); Has 23255 Blast hits to 19714 proteins in 2080 species: Archae - 166; Bacteria - 7857; Metazoa - 4104; Fungi - 1954; Plants - 1634; Viruses - 15; Other Eukaryotes - 7525 (source: NCBI BLink).  protein_id AT5G01390.2p  transcript_id AT5G01390.2  protein_id AT5G01390.2p  transcript_id AT5G01390.2  
At5g01390	chr5:000162035	0.0	C/162035-162199,161720-161949,160853-160938,160500-160735	AT5G01390.3  CDS  gene_syn T10O8.100, T10O8_100  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock protein, putative  note DNAJ heat shock protein, putative; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock protein, putative (TAIR:AT3G08910.1).  protein_id AT5G01390.3p  transcript_id AT5G01390.3  protein_id AT5G01390.3p  transcript_id AT5G01390.3  
At5g01400	chr5:000170870	0.0	C/170870-171072,170284-170443,170082-170174,169924-169999,169645-169813,169035-169206,168711-168830,168051-168605,167391-167936,166988-167056,166582-166698,166265-166507,165970-166017,165790-165888,165470-165669,165352-165385,165167-165274,164996-165079,164845-164892,164685-164759,164517-164612,164295-164375,164121-164192,163996-164040,163809-163892,163615-163718,162803-163505	AT5G01400.1  CDS  gene_syn ENHANCED SILENCING PHENOTYPE 4, ESP4, T10O8.110, T10O8_110  gene ESP4  function Encodes a Symplekin/Pta1 homologue which would have the potential to interact with either ESP1 or AtCstF64.  go_function binding|GO:0005488||IEA  go_component mRNA cleavage and polyadenylation specificity factor complex|GO:0005847|17008405|NAS  go_process RNA processing|GO:0006396|17008405|IMP  go_process posttranscriptional gene silencing by RNA|GO:0035194|17008405|IMP  product ESP4 (ENHANCED SILENCING PHENOTYPE 4); binding  note ENHANCED SILENCING PHENOTYPE 4 (ESP4); FUNCTIONS IN: binding; INVOLVED IN: posttranscriptional gene silencing by RNA, RNA processing; LOCATED IN: mRNA cleavage and polyadenylation specificity factor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27595.1); Has 22261 Blast hits to 10500 proteins in 708 species: Archae - 32; Bacteria - 4529; Metazoa - 6997; Fungi - 2408; Plants - 592; Viruses - 201; Other Eukaryotes - 7502 (source: NCBI BLink).  protein_id AT5G01400.1p  transcript_id AT5G01400.1  protein_id AT5G01400.1p  transcript_id AT5G01400.1  
At5g01410	chr5:000172576	0.0	C/172576-173505	AT5G01410.1  CDS  gene_syn ATPDX1.3, PDX1, PDX1.3, PYRIDOXINE BIOSYNTHESIS 1.3, REDUCED SUGAR RESPONSE 4, RSR4, T10O8.120, T10O8_120  gene RSR4  function Encodes a protein predicted to function in tandem with PDX2 to form glutamine amidotransferase complex with involved in vitamin B6 biosynthesis.  go_component cytosol|GO:0005829|16157873|IDA  go_component plasma membrane|GO:0005886|16236150|IDA  go_component endomembrane system|GO:0012505|16236150|IDA  go_process amino acid metabolic process|GO:0006520|16766694|IMP  go_process response to stress|GO:0006950|16236150|IMP  go_process response to oxidative stress|GO:0006979|16236150|IMP  go_process response to lipid hydroperoxide|GO:0006982|16236150|IMP  go_process pyridoxine biosynthetic process|GO:0008615|16236150|IGI  go_process response to absence of light|GO:0009646|17227548|IEP  go_process response to salt stress|GO:0009651|17227548|IMP  go_process response to UV-B|GO:0010224|15474373|IGI  go_process response to non-ionic osmotic stress|GO:0010335|17227548|IMP  go_process chlorophyll metabolic process|GO:0015994|16766694|IMP  go_process hyperosmotic salinity response|GO:0042538|16236150|IMP  go_process vitamin B6 biosynthetic process|GO:0042819|16157873|IGI  go_function protein homodimerization activity|GO:0042803|16766694|IPI  go_function protein heterodimerization activity|GO:0046982|16766694|IPI  product RSR4 (REDUCED SUGAR RESPONSE 4); protein heterodimerization/ protein homodimerization  note REDUCED SUGAR RESPONSE 4 (RSR4); FUNCTIONS IN: protein heterodimerization activity, protein homodimerization activity; INVOLVED IN: in 12 processes; LOCATED IN: cytosol, endomembrane system, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vitamin B6 biosynthesis protein (InterPro:IPR001852), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: ATPDX1.1 (pyridoxine biosynthesis 1.1); protein heterodimerization (TAIR:AT2G38230.1); Has 2127 Blast hits to 2124 proteins in 574 species: Archae - 150; Bacteria - 973; Metazoa - 10; Fungi - 101; Plants - 135; Viruses - 0; Other Eukaryotes - 758 (source: NCBI BLink).  protein_id AT5G01410.1p  transcript_id AT5G01410.1  protein_id AT5G01410.1p  transcript_id AT5G01410.1  
At5g01420	chr5:000174886	0.0	C/174886-176091	AT5G01420.1  CDS  gene_syn T10O8.130, T10O8_130  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  product glutaredoxin family protein  note glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin family protein (TAIR:AT5G03870.1); Has 300 Blast hits to 300 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 90; Fungi - 0; Plants - 195; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT5G01420.1p  transcript_id AT5G01420.1  protein_id AT5G01420.1p  transcript_id AT5G01420.1  
At5g01430	chr5:000177980	0.0	C/177980-178010,177657-177748,177477-177557,177258-177355,177094-177175,176797-176835	AT5G01430.1  CDS  gene_syn T10O8.140  go_process vesicle-mediated transport|GO:0016192||IEA  go_component cellular_component|GO:0005575||ND  go_process vesicle-mediated transport|GO:0016192||ISS  go_function molecular_function|GO:0003674||ND  product Got1-like family protein  note Got1-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Got1-like protein (InterPro:IPR007305); BEST Arabidopsis thaliana protein match is: Got1-like family protein (TAIR:AT3G49420.1); Has 318 Blast hits to 318 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 75; Plants - 52; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT5G01430.1p  transcript_id AT5G01430.1  protein_id AT5G01430.1p  transcript_id AT5G01430.1  
At5g01440	chr5:000179822	0.0	W/179822-179914,179995-180098,180211-180355,180442-180545,180713-180961,181036-181190,181248-181321	AT5G01440.1  CDS  gene_syn T10O8.150, T10O8_150  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product insulin-degrading enzyme-related  note insulin-degrading enzyme-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: catalytic/ metal ion binding / metalloendopeptidase/ zinc ion binding (TAIR:AT1G06900.1); Has 385 Blast hits to 384 proteins in 107 species: Archae - 0; Bacteria - 9; Metazoa - 224; Fungi - 68; Plants - 53; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT5G01440.1p  transcript_id AT5G01440.1  protein_id AT5G01440.1p  transcript_id AT5G01440.1  
At5g01445	chr5:000182398	0.0	C/182398-182526,182239-182312,182013-182151	AT5G01445.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G01445.1p  transcript_id AT5G01445.1  protein_id AT5G01445.1p  transcript_id AT5G01445.1  
At5g01450	chr5:000185995	0.0	C/185995-186244,185803-185909,185591-185716,185419-185512,184989-185063,184819-184901,184515-184661,184298-184370,183891-184194,183693-183768	AT5G01450.1  CDS  gene_syn T10O8.160, T10O8_160  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G38185.2); Has 1180 Blast hits to 1177 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 735; Fungi - 24; Plants - 154; Viruses - 82; Other Eukaryotes - 185 (source: NCBI BLink).  protein_id AT5G01450.1p  transcript_id AT5G01450.1  protein_id AT5G01450.1p  transcript_id AT5G01450.1  
At5g01460	chr5:000186823	0.0	W/186823-187172,187270-187355,187542-187657,187775-187885,188070-188168,188291-188413,188695-188757,188840-188904,189004-189113,189215-189329,189424-189489,189592-189702,189792-189858,189961-190008	AT5G01460.1  CDS  gene_syn T10O8.170, T10O8_170  go_component membrane|GO:0016020|11152613|ISS  product LMBR1 integral membrane family protein  note LMBR1 integral membrane family protein; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: LMBR1-like conserved region (InterPro:IPR006876); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G08930.1); Has 251 Blast hits to 250 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 107; Fungi - 40; Plants - 31; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT5G01460.1p  transcript_id AT5G01460.1  protein_id AT5G01460.1p  transcript_id AT5G01460.1  
At5g01470	chr5:000190953	0.0	W/190953-191010,191099-191160,191465-191598,191756-191901,191986-192057,192129-192215,192296-192462	AT5G01470.1  CDS  gene_syn T10O8.180, T10O8_180  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; Has 264 Blast hits to 264 proteins in 96 species: Archae - 2; Bacteria - 20; Metazoa - 104; Fungi - 79; Plants - 42; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT5G01470.1p  transcript_id AT5G01470.1  protein_id AT5G01470.1p  transcript_id AT5G01470.1  
At5g01470	chr5:000190953	0.0	W/190953-191010,191099-191160,191465-191598,191756-191901,191986-192057,192129-192215,192302-192462	AT5G01470.3  CDS  gene_syn T10O8.180, T10O8_180  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; Has 263 Blast hits to 263 proteins in 95 species: Archae - 2; Bacteria - 17; Metazoa - 104; Fungi - 80; Plants - 42; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT5G01470.3p  transcript_id AT5G01470.3  protein_id AT5G01470.3p  transcript_id AT5G01470.3  
At5g01470	chr5:000190953	0.0	W/190953-191010,191099-191160,191465-191598,191756-191901,191986-192057,192129-192227,192296-192462	AT5G01470.2  CDS  gene_syn T10O8.180, T10O8_180  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; Has 270 Blast hits to 270 proteins in 102 species: Archae - 2; Bacteria - 26; Metazoa - 103; Fungi - 80; Plants - 41; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT5G01470.2p  transcript_id AT5G01470.2  protein_id AT5G01470.2p  transcript_id AT5G01470.2  
At5g01480	chr5:000192990	0.0	W/192990-194231	AT5G01480.1  CDS  gene_syn F7A7.1  go_process intracellular signaling cascade|GO:0007242||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular signaling cascade; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT2G02610.1); Has 1265 Blast hits to 530 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 61; Fungi - 0; Plants - 1201; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G01480.1p  transcript_id AT5G01480.1  protein_id AT5G01480.1p  transcript_id AT5G01480.1  
At5g01490	chr5:000195589	0.0	W/195589-195876,195984-196051,196160-196188,196453-196649,196782-197003,197099-197239,197328-197444,197543-197596,197823-197939,198024-198114,198204-198240,198462-198465	AT5G01490.1  CDS  gene_syn ATCAX4, CATION EXCHANGER 4, CAX4, F7A7.10, F7A7_10  gene CAX4  function Encodes a cation/proton antiporter, a member of Low affinity calcium antiporter CAX2 family.  go_component vacuolar membrane|GO:0005774|11950973|IDA  go_component plant-type vacuole membrane|GO:0009705|11950973|IDA  go_process calcium ion transport|GO:0006816|16244156|IGI  go_function calcium:cation antiporter activity|GO:0015368|11950973|IDA  go_function calcium:cation antiporter activity|GO:0015368||ISS  go_function calcium:hydrogen antiporter activity|GO:0015369|11950973|ISS  go_function cation:cation antiporter activity|GO:0015491|11500563|NAS  go_function cation:cation antiporter activity|GO:0015491|11950973|TAS  go_function cation:cation antiporter activity|GO:0015491||ISS  product CAX4 (CATION EXCHANGER 4); calcium:cation antiporter/ calcium:hydrogen antiporter/ cation:cation antiporter  note CATION EXCHANGER 4 (CAX4); FUNCTIONS IN: cation:cation antiporter activity, calcium:cation antiporter activity, calcium:hydrogen antiporter activity; INVOLVED IN: calcium ion transport; LOCATED IN: plant-type vacuole membrane, vacuolar membrane; EXPRESSED IN: sperm cell, root, pollen tube; CONTAINS InterPro DOMAIN/s: Sodium/calcium exchanger membrane region (InterPro:IPR004837), Calcium/proton exchanger superfamily (InterPro:IPR004798), Calcium/proton exchanger (InterPro:IPR004713); BEST Arabidopsis thaliana protein match is: CAX3 (CATION EXCHANGER 3); calcium:cation antiporter/ calcium:hydrogen antiporter/ cation:cation antiporter (TAIR:AT3G51860.1); Has 2119 Blast hits to 2000 proteins in 631 species: Archae - 12; Bacteria - 1098; Metazoa - 58; Fungi - 478; Plants - 152; Viruses - 0; Other Eukaryotes - 321 (source: NCBI BLink).  protein_id AT5G01490.1p  transcript_id AT5G01490.1  protein_id AT5G01490.1p  transcript_id AT5G01490.1  
At5g01500	chr5:000199017	0.0	W/199017-199448,199804-199860,199958-200020,200113-200169,200280-200363,200441-200509,200586-200698,200783-200952,201036-201114,201206-201329	AT5G01500.1  CDS  gene_syn F7A7.20, F7A7_20  function encodes an ATP/ADP carrier that is located to the thylakoid membrane involved in providing ATP during thylakoid biogenesis and turnover  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_process transport|GO:0006810||IEA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_component plastid envelope|GO:0009526|17261580|IDA  go_component plastid|GO:0009536|16618929|IDA  go_component thylakoid membrane|GO:0042651|17261580|IDA  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  go_function ATP transmembrane transporter activity|GO:0005347|17261580|IDA  go_function binding|GO:0005488||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: transporter activity, binding, ATP transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: binding / transporter (TAIR:AT3G51870.1); Has 19358 Blast hits to 10018 proteins in 364 species: Archae - 0; Bacteria - 0; Metazoa - 9556; Fungi - 5286; Plants - 2647; Viruses - 7; Other Eukaryotes - 1862 (source: NCBI BLink).  protein_id AT5G01500.1p  transcript_id AT5G01500.1  protein_id AT5G01500.1p  transcript_id AT5G01500.1  
At5g01510	chr5:000201702	0.0	W/201702-201856,201940-202002,202088-202245,202390-202490,202609-202679,202773-202819,202900-202978,203082-203154,203269-203358,203458-203517,203641-203754,203839-203899,203969-204087,204183-204275,204906-205151	AT5G01510.1  CDS  gene_syn F7A7.30, F7A7_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF647 (InterPro:IPR006968); BEST Arabidopsis thaliana protein match is: RUS1 (ROOT UVB SENSITIVE 1) (TAIR:AT3G45890.1); Has 266 Blast hits to 266 proteins in 86 species: Archae - 0; Bacteria - 2; Metazoa - 95; Fungi - 39; Plants - 94; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT5G01510.1p  transcript_id AT5G01510.1  protein_id AT5G01510.1p  transcript_id AT5G01510.1  
At5g01520	chr5:000206797	0.0	W/206797-206861,207453-207603,207703-207769,207867-208101,208170-208170	AT5G01520.2  CDS  gene_syn F7A7.40, F7A7_40  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT3G47160.1); Has 104 Blast hits to 104 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G01520.2p  transcript_id AT5G01520.2  protein_id AT5G01520.2p  transcript_id AT5G01520.2  
At5g01520	chr5:000206797	0.0	W/206797-206861,207453-207603,207703-207769,207867-208101,208189-208399	AT5G01520.1  CDS  gene_syn F7A7.40, F7A7_40  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT3G47160.1); Has 1238 Blast hits to 1237 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 593; Fungi - 65; Plants - 210; Viruses - 109; Other Eukaryotes - 261 (source: NCBI BLink).  protein_id AT5G01520.1p  transcript_id AT5G01520.1  protein_id AT5G01520.1p  transcript_id AT5G01520.1  
At5g01530	chr5:000209084	0.0	W/209084-209593,209881-210243	AT5G01530.1  CDS  gene_syn F7A7.50, F7A7_50  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_component light-harvesting complex|GO:0030076||ISS  go_process response to blue light|GO:0009637|18820083|IEP  go_process response to red light|GO:0010114|18820083|IEP  go_process response to far red light|GO:0010218|18820083|IEP  go_process photosynthesis|GO:0015979||ISS  go_function chlorophyll binding|GO:0016168||ISS  product chlorophyll A-B binding protein CP29 (LHCB4)  note chlorophyll A-B binding protein CP29 (LHCB4); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light, photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: LHCB4.2 (light harvesting complex PSII); chlorophyll binding (TAIR:AT3G08940.2); Has 1770 Blast hits to 1698 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1503; Viruses - 0; Other Eukaryotes - 265 (source: NCBI BLink).  protein_id AT5G01530.1p  transcript_id AT5G01530.1  protein_id AT5G01530.1p  transcript_id AT5G01530.1  
At5g01540	chr5:000211285	0.0	C/211285-213333	AT5G01540.1  CDS  gene_syn F7A7.60, F7A7_60, LECRKA4.1, LECTIN RECEPTOR KINASE A4.1  gene LECRKA4.1  function Encodes LecRKA4.1, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination.  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component plasma membrane|GO:0005886|18987212|IEP  go_process response to abscisic acid stimulus|GO:0009737|16258012|IEP  go_process abscisic acid mediated signaling|GO:0009738|18987212|IMP  go_process seed germination|GO:0009845|18987212|IMP  go_function kinase activity|GO:0016301||ISS  product LECRKA4.1 (LECTIN RECEPTOR KINASE A4.1); kinase  note LECTIN RECEPTOR KINASE A4.1 (LECRKA4.1); FUNCTIONS IN: kinase activity; INVOLVED IN: abscisic acid mediated signaling, N-terminal protein myristoylation, seed germination, response to abscisic acid stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: LECRKA4.2 (LECTIN RECEPTOR KINASE A4.1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ sugar binding (TAIR:AT5G01550.1); Has 88912 Blast hits to 87755 proteins in 3304 species: Archae - 60; Bacteria - 7985; Metazoa - 38133; Fungi - 7227; Plants - 20052; Viruses - 404; Other Eukaryotes - 15051 (source: NCBI BLink).  protein_id AT5G01540.1p  transcript_id AT5G01540.1  protein_id AT5G01540.1p  transcript_id AT5G01540.1  
At5g01550	chr5:000214517	0.0	C/214517-216583	AT5G01550.1  CDS  gene_syn F7A7.70, F7A7_70, LECRKA4.2, LECTIN RECEPTOR KINASE A4.1  gene LECRKA4.2  function Encodes LecRKA4.2, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination.  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_component plasma membrane|GO:0005886|18987212|IEP  go_process abscisic acid mediated signaling|GO:0009738|18987212|IMP  go_process seed germination|GO:0009845|18987212|IMP  go_function kinase activity|GO:0016301||ISS  product LECRKA4.2 (LECTIN RECEPTOR KINASE A4.1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ sugar binding  note LECTIN RECEPTOR KINASE A4.1 (LECRKA4.2); FUNCTIONS IN: sugar binding, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: abscisic acid mediated signaling, seed germination; LOCATED IN: plasma membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: LECRKA4.3 (LECTIN RECEPTOR KINASE A4.3); kinase (TAIR:AT5G01560.1); Has 90243 Blast hits to 88957 proteins in 3480 species: Archae - 64; Bacteria - 8068; Metazoa - 38898; Fungi - 7155; Plants - 20308; Viruses - 409; Other Eukaryotes - 15341 (source: NCBI BLink).  protein_id AT5G01550.1p  transcript_id AT5G01550.1  protein_id AT5G01550.1p  transcript_id AT5G01550.1  
At5g01560	chr5:000218170	0.0	C/218170-220245	AT5G01560.1  CDS  gene_syn F7A7.80, F7A7_80, LECRKA4.3, LECTIN RECEPTOR KINASE A4.3  gene LECRKA4.3  function Encodes LecRKA4.3, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination.  go_component plasma membrane|GO:0005886|18987212|IEP  go_process abscisic acid mediated signaling|GO:0009738|18987212|IMP  go_process seed germination|GO:0009845|18987212|IMP  go_function kinase activity|GO:0016301||ISS  product LECRKA4.3 (LECTIN RECEPTOR KINASE A4.3); kinase  note LECTIN RECEPTOR KINASE A4.3 (LECRKA4.3); FUNCTIONS IN: kinase activity; INVOLVED IN: abscisic acid mediated signaling, seed germination; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: LECRKA4.2 (LECTIN RECEPTOR KINASE A4.1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ sugar binding (TAIR:AT5G01550.1); Has 90496 Blast hits to 89218 proteins in 3469 species: Archae - 62; Bacteria - 8072; Metazoa - 39126; Fungi - 7115; Plants - 20352; Viruses - 404; Other Eukaryotes - 15365 (source: NCBI BLink).  protein_id AT5G01560.1p  transcript_id AT5G01560.1  protein_id AT5G01560.1p  transcript_id AT5G01560.1  
At5g01570	chr5:000221367	0.0	W/221367-221538,221607-221752,221865-221929,222068-222158	AT5G01570.1  CDS  gene_syn F7A7.90, F7A7_90  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G08880.1); Has 39 Blast hits to 39 proteins in 15 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 2; Plants - 20; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT5G01570.1p  transcript_id AT5G01570.1  protein_id AT5G01570.1p  transcript_id AT5G01570.1  
At5g01580	chr5:000223610	0.0	C/223610-223852,223460-223525,223203-223340,223003-223095,222760-222921	AT5G01580.1  CDS  gene_syn F7A7.100, F7A7_100, OAS HIGH ACCUMULATION 1, OSH1  gene OSH1  function thiol reductase in OAS metabolism  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product OSH1 (OAS HIGH ACCUMULATION 1); catalytic  note OAS HIGH ACCUMULATION 1 (OSH1); FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Gamma interferon inducible lysosomal thiol reductase GILT (InterPro:IPR004911); BEST Arabidopsis thaliana protein match is: gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein (TAIR:AT1G07080.1); Has 334 Blast hits to 332 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 260; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT5G01580.1p  transcript_id AT5G01580.1  protein_id AT5G01580.1p  transcript_id AT5G01580.1  
At5g01590	chr5:000224249	0.0	W/224249-224942,225406-225603,225723-226005,226096-226258,226375-226620	AT5G01590.1  CDS  gene_syn F7A7.110, F7A7_110  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 33 Blast hits to 32 proteins in 18 species: Archae - 0; Bacteria - 18; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G01590.1p  transcript_id AT5G01590.1  protein_id AT5G01590.1p  transcript_id AT5G01590.1  
At5g01595	chr5:000227024	0.0	W/227024-230013	AT5G01595.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT5G01600  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G01595.1  
At5g01600	chr5:000229287	0.0	C/229287-229594,229114-229197,228941-229001,228753-228840,228590-228651,228429-228494,228272-228335,228149-228183	AT5G01600.1  CDS  gene_syn ATFER1  gene ATFER1  function Encodes a ferretin protein that is targeted to the chloroplast. Member of a Ferritin gene family. Gene expression is induced in response to iron overload and by nitric oxide. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component chloroplast|GO:0009507|8761454|ISS  go_process response to reactive oxygen species|GO:0000302|18826427|IGI  go_process iron ion transport|GO:0006826|18826427|IGI  go_process iron ion transport|GO:0006826||ISS  go_process cellular iron ion homeostasis|GO:0006879||ISS  go_process response to cold|GO:0009409|14535880|IEP  go_process response to bacterium|GO:0009617|15998312|IEP  go_process response to bacterium|GO:0009617|15998312|IMP  go_process response to bacterium|GO:0009617|19121106|IEP  go_process flower development|GO:0009908|18826427|IGI  go_process response to iron ion|GO:0010039|11672431|IEP  go_process photosynthesis|GO:0015979|18826427|IGI  go_process response to hydrogen peroxide|GO:0042542|11672431|IEP  go_process leaf development|GO:0048366|18826427|IGI  go_process iron ion homeostasis|GO:0055072|18826427|IGI  go_function iron ion binding|GO:0005506|11672431|TAS  go_function ferric iron binding|GO:0008199||ISS  product ATFER1; ferric iron binding / iron ion binding  note ATFER1; FUNCTIONS IN: ferric iron binding, iron ion binding; INVOLVED IN: in 11 processes; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ferritin, N-terminal (InterPro:IPR001519), Ferritin-related (InterPro:IPR012347), Ferritin-like (InterPro:IPR009040), Ferritin, conserved site (InterPro:IPR014034), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078), Ferritin and Dps (InterPro:IPR008331); BEST Arabidopsis thaliana protein match is: ATFER4 (ferritin 4); binding / ferric iron binding / oxidoreductase/ transition metal ion binding (TAIR:AT2G40300.1); Has 2743 Blast hits to 2738 proteins in 761 species: Archae - 123; Bacteria - 1066; Metazoa - 1133; Fungi - 6; Plants - 218; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink).  protein_id AT5G01600.1p  transcript_id AT5G01600.1  protein_id AT5G01600.1p  transcript_id AT5G01600.1  
At5g01610	chr5:000231075	0.0	W/231075-231161,231485-231539,231624-231994	AT5G01610.1  CDS  gene_syn F7A7.130, F7A7_130  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G08890.2); Has 251 Blast hits to 251 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 250; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G01610.1p  transcript_id AT5G01610.1  protein_id AT5G01610.1p  transcript_id AT5G01610.1  
At5g01620	chr5:000232882	0.0	W/232882-233092,233207-233492,233691-233862,233964-234160,234242-234394,234491-234821	AT5G01620.1  CDS  gene_syn F7A7.140, F7A7_140  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38320.1); Has 740 Blast hits to 727 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 0; Plants - 714; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G01620.1p  transcript_id AT5G01620.1  protein_id AT5G01620.1p  transcript_id AT5G01620.1  
At5g01620	chr5:000232882	0.0	W/232882-233092,233207-233492,233691-233862,233964-234160,234242-234394,234491-234821	AT5G01620.2  CDS  gene_syn F7A7.140, F7A7_140  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38320.1); Has 740 Blast hits to 727 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 0; Plants - 714; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G01620.2p  transcript_id AT5G01620.2  protein_id AT5G01620.2p  transcript_id AT5G01620.2  
At5g01630	chr5:000240758	0.0	C/240758-240911,240528-240671,240231-240392,239000-239986,238783-238907,238541-238695,238257-238379,237999-238184,237843-237924,237693-237743,237525-237606,237314-237425,237159-237230,236662-236860,236411-236593,235982-236124,235846-235908,235552-235756,235275-235448,235117-235182	AT5G01630.1  CDS  gene_syn ATBRCA2(V), BRCA2(V), BRCA2-LIKE B, BRCA2B, F7A7.150, F7A7_150  gene BRCA2B  function Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with with both Rad51 and Dss1(I) or both Dmc1 and Dss1(I) in a tripartite complex.  go_function single-stranded DNA binding|GO:0003697||IEA  go_function protein binding|GO:0005515||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process meiosis|GO:0007126|15014444|IMP  product BRCA2B (BRCA2-LIKE B); protein binding / single-stranded DNA binding  note BRCA2-LIKE B (BRCA2B); FUNCTIONS IN: protein binding, single-stranded DNA binding; INVOLVED IN: meiosis; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), BRCA2, helical (InterPro:IPR015252), BRCA2 repeat subgroup (InterPro:IPR018231), DNA recombination repair protein, BRCA2 (InterPro:IPR011370), BRCA2 repeat (InterPro:IPR002093), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525); BEST Arabidopsis thaliana protein match is: protein binding / single-stranded DNA binding (TAIR:AT4G00020.1); Has 218 Blast hits to 158 proteins in 67 species: Archae - 0; Bacteria - 4; Metazoa - 119; Fungi - 15; Plants - 30; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT5G01630.1p  transcript_id AT5G01630.1  protein_id AT5G01630.1p  transcript_id AT5G01630.1  
At5g01640	chr5:000241442	0.0	C/241442-242113	AT5G01640.1  CDS  gene_syn F7A7.160, F7A7_160, PRA1.B5, PRENYLATED RAB ACCEPTOR 1.B5  gene PRA1.B5  go_component endoplasmic reticulum|GO:0005783|18583532|IDA  go_process vesicle-mediated transport|GO:0016192|18583532|IDA  go_function molecular_function|GO:0003674||ND  product PRA1.B5 (PRENYLATED RAB ACCEPTOR 1.B5)  note PRENYLATED RAB ACCEPTOR 1.B5 (PRA1.B5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: PRA1.B4 (PRENYLATED RAB ACCEPTOR 1.B4) (TAIR:AT2G38360.1); Has 359 Blast hits to 359 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 107; Fungi - 31; Plants - 195; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT5G01640.1p  transcript_id AT5G01640.1  protein_id AT5G01640.1p  transcript_id AT5G01640.1  
At5g01650	chr5:000243923	0.0	C/243923-244033,243248-243448,242734-242769	AT5G01650.1  CDS  gene_syn F7A7.170, F7A7_170  go_component chloroplast|GO:0009507|18431481|IDA  go_process inflammatory response|GO:0006954||ISS  go_process response to other organism|GO:0051707||ISS  go_function molecular_function|GO:0003674||ND  product macrophage migration inhibitory factor family protein / MIF family protein  note macrophage migration inhibitory factor family protein / MIF family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: inflammatory response, response to other organism; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tautomerase (InterPro:IPR014347), Macrophage migration inhibitory factor (InterPro:IPR001398); BEST Arabidopsis thaliana protein match is: macrophage migration inhibitory factor family protein / MIF family protein (TAIR:AT5G57170.1); Has 642 Blast hits to 642 proteins in 160 species: Archae - 0; Bacteria - 104; Metazoa - 312; Fungi - 10; Plants - 65; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).  protein_id AT5G01650.1p  transcript_id AT5G01650.1  protein_id AT5G01650.1p  transcript_id AT5G01650.1  
At5g01650	chr5:000243923	0.0	C/243923-244033,243248-243448,243067-243123	AT5G01650.2  CDS  gene_syn F7A7.170, F7A7_170  go_process inflammatory response|GO:0006954||ISS  go_process response to other organism|GO:0051707||ISS  go_function molecular_function|GO:0003674||ND  product macrophage migration inhibitory factor family protein / MIF family protein  note macrophage migration inhibitory factor family protein / MIF family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: inflammatory response, response to other organism; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tautomerase (InterPro:IPR014347), Macrophage migration inhibitory factor (InterPro:IPR001398); BEST Arabidopsis thaliana protein match is: macrophage migration inhibitory factor family protein / MIF family protein (TAIR:AT5G57170.1).  protein_id AT5G01650.2p  transcript_id AT5G01650.2  protein_id AT5G01650.2p  transcript_id AT5G01650.2  
At5g01660	chr5:000248325	0.0	C/248325-248442,247951-248132,247203-247796,246687-246764,246111-246450,245548-245747,245166-245242,244969-245070,244681-244870,244504-244593	AT5G01660.1  CDS  gene_syn F7A7.180, F7A7_180  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Kelch repeat type 1 (InterPro:IPR006652), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Development and cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11000.2); Has 12390 Blast hits to 5423 proteins in 323 species: Archae - 22; Bacteria - 787; Metazoa - 8729; Fungi - 223; Plants - 966; Viruses - 639; Other Eukaryotes - 1024 (source: NCBI BLink).  protein_id AT5G01660.1p  transcript_id AT5G01660.1  protein_id AT5G01660.1p  transcript_id AT5G01660.1  
At5g01670	chr5:000252000	0.0	W/252000-252143,252298-252348,252448-252521,252603-252690,252762-252968,253043-253114,253186-253428,253767-253856	AT5G01670.1  CDS  gene_syn F7A7.190, F7A7_190  go_process oxidation reduction|GO:0055114||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product aldose reductase, putative  note aldose reductase, putative; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: oxidation reduction; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Aldo/keto reductase, conserved site (InterPro:IPR018170); BEST Arabidopsis thaliana protein match is: aldo/keto reductase family protein (TAIR:AT2G37770.2); Has 11182 Blast hits to 11157 proteins in 1271 species: Archae - 154; Bacteria - 5828; Metazoa - 1821; Fungi - 1019; Plants - 767; Viruses - 0; Other Eukaryotes - 1593 (source: NCBI BLink).  protein_id AT5G01670.1p  transcript_id AT5G01670.1  protein_id AT5G01670.1p  transcript_id AT5G01670.1  
At5g01670	chr5:000252000	0.0	W/252000-252143,252298-252348,252448-252690,252762-252968,253043-253114,253186-253428,253767-253856	AT5G01670.2  CDS  gene_syn F7A7.190, F7A7_190  go_process oxidation reduction|GO:0055114||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product aldose reductase, putative  note aldose reductase, putative; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: oxidation reduction; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Aldo/keto reductase, conserved site (InterPro:IPR018170); BEST Arabidopsis thaliana protein match is: aldo/keto reductase family protein (TAIR:AT2G37770.2); Has 10055 Blast hits to 10019 proteins in 1227 species: Archae - 144; Bacteria - 5075; Metazoa - 1620; Fungi - 990; Plants - 749; Viruses - 0; Other Eukaryotes - 1477 (source: NCBI BLink).  protein_id AT5G01670.2p  transcript_id AT5G01670.2  protein_id AT5G01670.2p  transcript_id AT5G01670.2  
At5g01680	chr5:000256428	0.0	C/256428-256640,255287-256297,254315-255202,253996-254226	AT5G01680.1  CDS  gene_syn ATCHX26, CATION/H+ EXCHANGER 26, CHX26, F7A7.200, F7A7_200  gene ATCHX26  function member of Putative Na+/H+ antiporter family  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|IC  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product ATCHX26; monovalent cation:proton antiporter/ sodium:hydrogen antiporter  note ATCHX26; FUNCTIONS IN: monovalent cation:proton antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte, pollen tube, leaf; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: ATCHX27; monovalent cation:proton antiporter/ sodium:hydrogen antiporter (TAIR:AT5G01690.1); Has 871 Blast hits to 862 proteins in 308 species: Archae - 44; Bacteria - 502; Metazoa - 0; Fungi - 77; Plants - 221; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT5G01680.1p  transcript_id AT5G01680.1  protein_id AT5G01680.1p  transcript_id AT5G01680.1  
At5g01690	chr5:000257410	0.0	W/257410-257628,257769-258281,258500-258753,258875-259013,259096-259953,260130-260345	AT5G01690.1  CDS  gene_syn ATCHX27, CATION/H+ EXCHANGER 27, CHX27, F7A7.210, F7A7_210  gene ATCHX27  function member of Putative Na+/H+ antiporter family  go_process cation transport|GO:0006812|11500563|IC  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product ATCHX27; monovalent cation:proton antiporter/ sodium:hydrogen antiporter  note ATCHX27; FUNCTIONS IN: monovalent cation:proton antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: ATCHX26; monovalent cation:proton antiporter/ sodium:hydrogen antiporter (TAIR:AT5G01680.1); Has 574 Blast hits to 423 proteins in 116 species: Archae - 14; Bacteria - 106; Metazoa - 0; Fungi - 83; Plants - 360; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT5G01690.1p  transcript_id AT5G01690.1  protein_id AT5G01690.1p  transcript_id AT5G01690.1  
At5g01700	chr5:000262289	0.0	C/262289-262345,261785-262090,261583-261697,261229-261452,260848-261147	AT5G01700.1  CDS  gene_syn F7A7.220, F7A7_220  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C family protein / PP2C family protein (TAIR:AT3G02750.2); Has 3677 Blast hits to 3675 proteins in 222 species: Archae - 0; Bacteria - 4; Metazoa - 1154; Fungi - 412; Plants - 1245; Viruses - 5; Other Eukaryotes - 857 (source: NCBI BLink).  protein_id AT5G01700.1p  transcript_id AT5G01700.1  protein_id AT5G01700.1p  transcript_id AT5G01700.1  
At5g01700	chr5:000262289	0.0	C/262289-262492,261785-262090,261583-261697,261229-261452,260848-261147	AT5G01700.2  CDS  gene_syn F7A7.220, F7A7_220  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C family protein / PP2C family protein (TAIR:AT3G02750.2); Has 3683 Blast hits to 3681 proteins in 223 species: Archae - 0; Bacteria - 4; Metazoa - 1154; Fungi - 414; Plants - 1245; Viruses - 5; Other Eukaryotes - 861 (source: NCBI BLink).  protein_id AT5G01700.2p  transcript_id AT5G01700.2  protein_id AT5G01700.2p  transcript_id AT5G01700.2  
At5g01710	chr5:000263709	0.0	C/263709-265250	AT5G01710.1  CDS  gene_syn F7A7.230, F7A7_230  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Methyltransferase FkbM (InterPro:IPR006342); BEST Arabidopsis thaliana protein match is: methyltransferase (TAIR:AT4G24805.1); Has 224 Blast hits to 223 proteins in 16 species: Archae - 0; Bacteria - 7; Metazoa - 38; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT5G01710.1p  transcript_id AT5G01710.1  protein_id AT5G01710.1p  transcript_id AT5G01710.1  
At5g01712	chr5:000265379	0.0	C/265379-265492	AT5G01712.1  CDS  gene_syn CPuORF48, Conserved peptide upstream open reading frame 48  gene CPuORF48  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF48 represents a conserved upstream opening reading frame relative to major ORF AT5G01710.1  product CPuORF48 (Conserved peptide upstream open reading frame 48)  note Conserved peptide upstream open reading frame 48 (CPuORF48); Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G01712.1p  transcript_id AT5G01712.1  protein_id AT5G01712.1p  transcript_id AT5G01712.1  
At5g01715	chr5:000267185	0.0	W/267185-269354	AT5G01715.1  pseudogenic_transcript  pseudo  note pseudogene, antisense mRNA to gene At5g01720, blastp match of 29% identity and 3.2e-13 P-value to GP|12848653|dbj|BAB28039.1||AK012109 unnamed protein product {Mus musculus}  
At5g01720	chr5:000269753	0.0	C/269753-270391,269351-269476,268895-268999,268247-268643,268032-268161,267657-267951,267315-267566,267118-267171	AT5G01720.1  CDS  gene_syn F7A7.240, F7A7_240  go_component endomembrane system|GO:0012505||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|ISS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product F-box family protein (FBL3)  note F-box family protein (FBL3); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G27920.1); Has 11798 Blast hits to 4690 proteins in 229 species: Archae - 0; Bacteria - 665; Metazoa - 5577; Fungi - 914; Plants - 2800; Viruses - 16; Other Eukaryotes - 1826 (source: NCBI BLink).  protein_id AT5G01720.1p  transcript_id AT5G01720.1  protein_id AT5G01720.1p  transcript_id AT5G01720.1  
At5g01732	chr5:000272839	0.0	W/272839-276426	AT5G01732.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT5G01730  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G01732.1  
At5g01730	chr5:000277407	0.0	C/277407-277561,276918-277081,276703-276826,276490-276619,276292-276353,273554-276179,273389-273475,273192-273305,273019-273069	AT5G01730.1  CDS  gene_syn ATSCAR4, F7A7.250, F7A7_250, WAVE3  gene ATSCAR4  function Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_component plastoglobule|GO:0010287|16461379|IDA  go_component SCAR complex|GO:0031209|18424615|TAS  go_process positive regulation of actin nucleation|GO:0051127|18424615|IMP  go_function molecular_function|GO:0003674||ND  product ATSCAR4  note ATSCAR4; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: positive regulation of actin nucleation; LOCATED IN: SCAR complex, chloroplast, plastoglobule; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding WH2 (InterPro:IPR003124); BEST Arabidopsis thaliana protein match is: SCAR2 (SCAR HOMOLOG 2) (TAIR:AT2G38440.1); Has 1042 Blast hits to 722 proteins in 140 species: Archae - 2; Bacteria - 213; Metazoa - 434; Fungi - 140; Plants - 121; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).  protein_id AT5G01730.1p  transcript_id AT5G01730.1  protein_id AT5G01730.1p  transcript_id AT5G01730.1  
At5g01734	chr5:000278990	0.0	C/278990-279142	AT5G01734.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G01734.1p  transcript_id AT5G01734.1  protein_id AT5G01734.1p  transcript_id AT5G01734.1  
At5g01740	chr5:000280793	0.0	W/280793-281281	AT5G01740.1  CDS  gene_syn T20L15.10, T20L15_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Wound-induced protein, Wun1 (InterPro:IPR009798); BEST Arabidopsis thaliana protein match is: SAG20 (SENESCENCE ASSOCIATED GENE 20) (TAIR:AT3G10985.1); Has 49 Blast hits to 49 proteins in 12 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G01740.1p  transcript_id AT5G01740.1  protein_id AT5G01740.1p  transcript_id AT5G01740.1  
At5g01747	chr5:000287586	0.0	W/287586-287734	AT5G01747.1  miRNA  gene_syn MICRORNA 164, MICRORNA 164B, MIR164, MIR164B  gene MIR164B  function Encodes a microRNA that targets several genes containing NAC domains including NAC1. Overexpression leads to decreased NAC1 mRNA and reduced lateral roots. Loss of function mutants have increased NAC1 and increased number of lateral roots. Also targets ORE1 to negatively regulate the timing of leaf senescence. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGGAGAAGCAGGGCACGUGCA  go_component cellular_component|GO:0005575||ND  go_process leaf senescence|GO:0010150|19229035|IMP  go_process negative regulation of transcription|GO:0016481|17287247|IMP  go_process gene silencing by miRNA|GO:0035195|15851028|IDA  go_function translation repressor activity, nucleic acid binding|GO:0000900|15829603|IMP  product MIR164B (MICRORNA 164B); miRNA  transcript_id AT5G01747.1  
At5g01750	chr5:000290034	0.0	W/290034-290315,290443-290670,290966-291109	AT5G01750.2  CDS  gene_syn T20L15.20, T20L15_20  go_component chloroplast|GO:0009507|15028209|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11740.1); Has 229 Blast hits to 229 proteins in 33 species: Archae - 0; Bacteria - 18; Metazoa - 0; Fungi - 21; Plants - 190; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G01750.2p  transcript_id AT5G01750.2  protein_id AT5G01750.2p  transcript_id AT5G01750.2  
At5g01750	chr5:000290034	0.0	W/290034-290315,290443-290685	AT5G01750.1  CDS  gene_syn T20L15.20, T20L15_20  go_component chloroplast|GO:0009507|15028209|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11740.1); Has 161 Blast hits to 161 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 157; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G01750.1p  transcript_id AT5G01750.1  protein_id AT5G01750.1p  transcript_id AT5G01750.1  
At5g01760	chr5:000291753	0.0	W/291753-291913,292000-292078,292175-292273,292393-292506,292582-292745,292838-292919,293013-293098,293200-293466,293551-294127	AT5G01760.1  CDS  gene_syn T20L15.30, T20L15_30  go_component intracellular|GO:0005622||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_component Golgi stack|GO:0005795||ISS  go_process intracellular protein transport|GO:0006886||ISS  go_process intra-Golgi vesicle-mediated transport|GO:0006891||ISS  go_function protein transporter activity|GO:0008565||ISS  product VHS domain-containing protein / GAT domain-containing protein  note VHS domain-containing protein / GAT domain-containing protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, intracellular; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), GAT (InterPro:IPR004152), VHS subgroup (InterPro:IPR018205), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: VHS domain-containing protein / GAT domain-containing protein (TAIR:AT2G38410.1); Has 1339 Blast hits to 1327 proteins in 151 species: Archae - 0; Bacteria - 8; Metazoa - 746; Fungi - 331; Plants - 152; Viruses - 2; Other Eukaryotes - 100 (source: NCBI BLink).  protein_id AT5G01760.1p  transcript_id AT5G01760.1  protein_id AT5G01760.1p  transcript_id AT5G01760.1  
At5g01770	chr5:000301495	0.0	C/301495-301773,301317-301419,301140-301225,300902-301060,300703-300819,300464-300603,299813-299967,299600-299681,299378-299456,299183-299284,298881-299054,298667-298777,298030-298349,297716-297927,296909-297475,296485-296802,296266-296392,295792-295952,295583-295716,295386-295487,295152-295237,294961-295042,294539-294880	AT5G01770.1  CDS  gene_syn ATRAPTOR1A, RAPTOR1A, RAPTOR2, T20L15.40, T20L15_40  gene RAPTOR2  function Encodes one of two Arabidopsis RAPTOR/KOG1 homologs. RAPTOR proteins are binding partners of the target of rapamycin kinase that is present in all eukaryotes and play a central role in the stimulation of cell growth and metabolism in response to nutrients. Mutations in this gene have no visible effects on embryo or plant development.  go_function binding|GO:0005488||IEA  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process cell growth|GO:0016049|15845148|IMP  go_function nucleotide binding|GO:0000166||ISS  product RAPTOR2 (RAPTOR2); binding / nucleotide binding  note RAPTOR2 (RAPTOR2); FUNCTIONS IN: binding, nucleotide binding; INVOLVED IN: cell growth; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Regulatory associated protein of TOR (InterPro:IPR004083), WD40 repeat (InterPro:IPR001680), WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: RAPTOR1; nucleotide binding / protein binding (TAIR:AT3G08850.1); Has 2246 Blast hits to 1756 proteins in 197 species: Archae - 2; Bacteria - 414; Metazoa - 826; Fungi - 430; Plants - 203; Viruses - 0; Other Eukaryotes - 371 (source: NCBI BLink).  protein_id AT5G01770.1p  transcript_id AT5G01770.1  protein_id AT5G01770.1p  transcript_id AT5G01770.1  
At5g01780	chr5:000304001	0.0	C/304001-304129,303141-303560,302729-303067,302365-302640	AT5G01780.1  CDS  gene_syn T20L15.50, T20L15_50  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  product oxidoreductase  note oxidoreductase; FUNCTIONS IN: oxidoreductase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase (TAIR:AT3G14160.1); Has 755 Blast hits to 755 proteins in 354 species: Archae - 0; Bacteria - 517; Metazoa - 77; Fungi - 32; Plants - 43; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT5G01780.1p  transcript_id AT5G01780.1  protein_id AT5G01780.1p  transcript_id AT5G01780.1  
At5g01790	chr5:000305057	0.0	C/305057-305683	AT5G01790.1  CDS  gene_syn T20L15.60, T20L15_60  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 58 Blast hits to 58 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G01790.1p  transcript_id AT5G01790.1  protein_id AT5G01790.1p  transcript_id AT5G01790.1  
At5g01800	chr5:000307422	0.0	W/307422-307509,307732-307880,307976-308176,308316-308375,308491-308646	AT5G01800.1  CDS  gene_syn T20L15.70, T20L15_70  go_component endomembrane system|GO:0012505||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function molecular_function|GO:0003674||ND  product saposin B domain-containing protein  note saposin B domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Saposin B (InterPro:IPR008139), Saposin-like (InterPro:IPR011001), Saposin-like type B, 1 (InterPro:IPR007856), Saposin-like type B, 2 (InterPro:IPR008138); BEST Arabidopsis thaliana protein match is: saposin B domain-containing protein (TAIR:AT3G51730.1); Has 860 Blast hits to 421 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 716; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT5G01800.1p  transcript_id AT5G01800.1  protein_id AT5G01800.1p  transcript_id AT5G01800.1  
At5g01810	chr5:000310460	0.0	W/310460-311725	AT5G01810.1  CDS  gene_syn ATPK10, CBL-INTERACTING PROTEIN KINASE 15, CIPK15, PKS3, PROTEIN KINASE 10, SERINE/THREONINE PROTEIN KINASE 10, SIP2, SMALL AND BASIC INTRINSIC PROTEIN 2, SNF1-RELATED PROTEIN KINASE 3.1, SNRK3.1, SOS3-INTERACTING PROTEIN 2, T20L15.80, T20L15_80  gene CIPK15  function Encodes a CBL-interacting serine/threonine protein kinase, also has similarities to SOS2 kinase.  go_process abscisic acid mediated signaling|GO:0009738|12194854|TAS  go_process negative regulation of abscisic acid mediated signaling|GO:0009788|12194854|IMP  go_function protein kinase activity|GO:0004672|12194854|ISS  go_function protein kinase activity|GO:0004672|12194854|TAS  go_function kinase activity|GO:0016301||ISS  product CIPK15 (CBL-INTERACTING PROTEIN KINASE 15); kinase/ protein kinase  note CBL-INTERACTING PROTEIN KINASE 15 (CIPK15); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: negative regulation of abscisic acid mediated signaling, abscisic acid mediated signaling; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CIPK2 (CBL-INTERACTING PROTEIN KINASE 2); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G07070.1); Has 96517 Blast hits to 94779 proteins in 3232 species: Archae - 74; Bacteria - 8653; Metazoa - 41586; Fungi - 8671; Plants - 18606; Viruses - 478; Other Eukaryotes - 18449 (source: NCBI BLink).  protein_id AT5G01810.1p  transcript_id AT5G01810.1  protein_id AT5G01810.1p  transcript_id AT5G01810.1  
At5g01810	chr5:000310460	0.0	W/310460-311725	AT5G01810.2  CDS  gene_syn ATPK10, CBL-INTERACTING PROTEIN KINASE 15, CIPK15, PKS3, PROTEIN KINASE 10, SERINE/THREONINE PROTEIN KINASE 10, SIP2, SMALL AND BASIC INTRINSIC PROTEIN 2, SNF1-RELATED PROTEIN KINASE 3.1, SNRK3.1, SOS3-INTERACTING PROTEIN 2, T20L15.80, T20L15_80  gene CIPK15  function Encodes a CBL-interacting serine/threonine protein kinase, also has similarities to SOS2 kinase.  go_process abscisic acid mediated signaling|GO:0009738|12194854|TAS  go_process negative regulation of abscisic acid mediated signaling|GO:0009788|12194854|IMP  go_function protein kinase activity|GO:0004672|12194854|ISS  go_function protein kinase activity|GO:0004672|12194854|TAS  go_function kinase activity|GO:0016301||ISS  product CIPK15 (CBL-INTERACTING PROTEIN KINASE 15); kinase/ protein kinase  note CBL-INTERACTING PROTEIN KINASE 15 (CIPK15); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: negative regulation of abscisic acid mediated signaling, abscisic acid mediated signaling; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CIPK2 (CBL-INTERACTING PROTEIN KINASE 2); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G07070.1); Has 96517 Blast hits to 94779 proteins in 3232 species: Archae - 74; Bacteria - 8653; Metazoa - 41586; Fungi - 8671; Plants - 18606; Viruses - 478; Other Eukaryotes - 18449 (source: NCBI BLink).  protein_id AT5G01810.2p  transcript_id AT5G01810.2  protein_id AT5G01810.2p  transcript_id AT5G01810.2  
At5g01820	chr5:000313423	0.0	C/313423-314751	AT5G01820.1  CDS  gene_syn ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1, ATSR1, CBL-INTERACTING PROTEIN KINASE 14, CIPK14, SERINE/THREONINE PROTEIN KINASE 1, SNF1-RELATED PROTEIN KINASE 3.15, SnRK3.15, T20L15.90, T20L15_90  gene ATSR1  function Encodes a CBL-interacting serine/threonine protein kinase.  go_component vacuole|GO:0005773|15539469|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1 (ATSR1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: signal transduction, protein amino acid phosphorylation; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: SIP4 (SOS3-INTERACTING PROTEIN 4); kinase/ protein kinase (TAIR:AT2G30360.1); Has 94285 Blast hits to 92777 proteins in 3131 species: Archae - 73; Bacteria - 8388; Metazoa - 40737; Fungi - 8488; Plants - 18165; Viruses - 470; Other Eukaryotes - 17964 (source: NCBI BLink).  protein_id AT5G01820.1p  transcript_id AT5G01820.1  protein_id AT5G01820.1p  transcript_id AT5G01820.1  
At5g01830	chr5:000320983	0.0	W/320983-323007	AT5G01830.1  CDS  gene_syn T20L15.100, T20L15_100  go_component ubiquitin ligase complex|GO:0000151||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  go_process response to chitin|GO:0010200|17722694|IEP  product armadillo/beta-catenin repeat family protein / U-box domain-containing protein  note armadillo/beta-catenin repeat family protein / U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: PUB17 (PLANT U-BOX 17); ubiquitin-protein ligase (TAIR:AT1G29340.1); Has 1693 Blast hits to 1583 proteins in 125 species: Archae - 0; Bacteria - 16; Metazoa - 163; Fungi - 73; Plants - 1229; Viruses - 3; Other Eukaryotes - 209 (source: NCBI BLink).  protein_id AT5G01830.1p  transcript_id AT5G01830.1  protein_id AT5G01830.1p  transcript_id AT5G01830.1  
At5g01840	chr5:000324552	0.0	W/324552-325364	AT5G01840.1  CDS  gene_syn ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ATOFP1, OFP1, OVATE FAMILY PROTEIN 1, T20L15.110, T20L15_110  gene OFP1  function Encodes a member of the plant specific ovate protein family. Members of this family have been shown to bind to KNOX and BELL- like TALE class homeodomain proteins. This interaction may mediate relocalization of the TALE homeodomain from the nucleus to the cytoplasm. Functions as a transcriptional repressor that suppresses cell elongation.  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component nucleolus|GO:0005730|15781858|IDA  go_component cytoskeleton|GO:0005856|15781858|IDA  go_process unidimensional cell growth|GO:0009826|17461792|IMP  go_function protein binding|GO:0005515|15781858|IPI  go_function transcription repressor activity|GO:0016564|17461792|IDA  product OFP1 (OVATE FAMILY PROTEIN 1); protein binding / transcription repressor  note OVATE FAMILY PROTEIN 1 (OFP1); FUNCTIONS IN: protein binding, transcription repressor activity; INVOLVED IN: N-terminal protein myristoylation, unidimensional cell growth; LOCATED IN: nucleolus, cytoskeleton; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623, plant (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: OFP2 (OVATE FAMILY PROTEIN 2) (TAIR:AT2G30400.1); Has 682 Blast hits to 484 proteins in 90 species: Archae - 0; Bacteria - 7; Metazoa - 139; Fungi - 93; Plants - 222; Viruses - 1; Other Eukaryotes - 220 (source: NCBI BLink).  protein_id AT5G01840.1p  transcript_id AT5G01840.1  protein_id AT5G01840.1p  transcript_id AT5G01840.1  
At5g01849	chr5:000331773	0.0	W/331773-331904	AT5G01849.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G01849.1p  transcript_id AT5G01849.1  protein_id AT5G01849.1p  transcript_id AT5G01849.1  
At5g01850	chr5:000332829	0.0	W/332829-333068,333141-333336,333420-333544,333639-333797,333899-334180	AT5G01850.1  CDS  gene_syn T20L15.120, T20L15_120  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Tyrosine-protein kinase, ATN1-like (InterPro:IPR015784); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT5G50180.1); Has 95530 Blast hits to 94330 proteins in 3583 species: Archae - 82; Bacteria - 8364; Metazoa - 42500; Fungi - 8087; Plants - 19045; Viruses - 483; Other Eukaryotes - 16969 (source: NCBI BLink).  protein_id AT5G01850.1p  transcript_id AT5G01850.1  protein_id AT5G01850.1p  transcript_id AT5G01850.1  
At5g01860	chr5:000335630	0.0	W/335630-336277	AT5G01860.1  CDS  gene_syn T20L15.130, T20L15_130  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: shoot, sepal, root, leaf; EXPRESSED DURING: LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT5G27880.1); Has 386 Blast hits to 383 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 386; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G01860.1p  transcript_id AT5G01860.1  protein_id AT5G01860.1p  transcript_id AT5G01860.1  
At5g01870	chr5:000337234	0.0	W/337234-337574,337669-337678	AT5G01870.1  CDS  gene_syn T20L15.140, T20L15_140  function Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_function lipid binding|GO:0008289||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product lipid transfer protein, putative  note lipid transfer protein, putative; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: LTP6; lipid binding (TAIR:AT3G08770.1); Has 803 Blast hits to 803 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 801; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G01870.1p  transcript_id AT5G01870.1  protein_id AT5G01870.1p  transcript_id AT5G01870.1  
At5g01880	chr5:000339017	0.0	W/339017-339496	AT5G01880.1  CDS  gene_syn T20L15.150, T20L15_150  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G10910.1); Has 6016 Blast hits to 5998 proteins in 215 species: Archae - 0; Bacteria - 6; Metazoa - 2009; Fungi - 442; Plants - 2634; Viruses - 32; Other Eukaryotes - 893 (source: NCBI BLink).  protein_id AT5G01880.1p  transcript_id AT5G01880.1  protein_id AT5G01880.1p  transcript_id AT5G01880.1  
At5g01881	chr5:000339838	0.0	W/339838-340266	AT5G01881.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G01881.1p  transcript_id AT5G01881.1  protein_id AT5G01881.1p  transcript_id AT5G01881.1  
At5g01890	chr5:000343194	0.0	C/343194-344650,341661-343107	AT5G01890.1  CDS  gene_syn T20L15.160, T20L15_160  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT3G56370.1); Has 147293 Blast hits to 98287 proteins in 3603 species: Archae - 89; Bacteria - 11351; Metazoa - 61054; Fungi - 6977; Plants - 48384; Viruses - 332; Other Eukaryotes - 19106 (source: NCBI BLink).  protein_id AT5G01890.1p  transcript_id AT5G01890.1  protein_id AT5G01890.1p  transcript_id AT5G01890.1  
At5g01900	chr5:000351748	0.0	C/351748-352013,351136-351661	AT5G01900.1  CDS  gene_syn AtWRKY62, T20L15.170, T20L15_170, WRKY62  gene WRKY62  function member of WRKY Transcription Factor; Group III  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process salicylic acid mediated signaling pathway|GO:0009863|18776063|IMP  go_process defense response to bacterium|GO:0042742|18776063|IMP  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY62; transcription factor  note WRKY62; FUNCTIONS IN: transcription factor activity; INVOLVED IN: defense response to bacterium, salicylic acid mediated signaling pathway, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY38; transcription factor (TAIR:AT5G22570.1); Has 1888 Blast hits to 1622 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1877; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT5G01900.1p  transcript_id AT5G01900.1  protein_id AT5G01900.1p  transcript_id AT5G01900.1  
At5g01910	chr5:000358314	0.0	C/358314-358655,358077-358229	AT5G01910.2  CDS  gene_syn T20L15.180, T20L15_180  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; Has 30 Blast hits to 30 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G01910.2p  transcript_id AT5G01910.2  protein_id AT5G01910.2p  transcript_id AT5G01910.2  
At5g01910	chr5:000358314	0.0	C/358314-358655,358164-358229,357950-358084	AT5G01910.1  CDS  gene_syn T20L15.180, T20L15_180  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; Has 47 Blast hits to 47 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 4; Plants - 16; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G01910.1p  transcript_id AT5G01910.1  protein_id AT5G01910.1p  transcript_id AT5G01910.1  
At5g01920	chr5:000359154	0.0	W/359154-359714,359784-359957,360042-360446,360520-360867	AT5G01920.1  CDS  gene_syn STN8, T20L15.190, T20L15_190  gene STN8  function Chloroplast thylakoid protein kinase STN8 is specific in phosphorylation of N-terminal threonine residues in D1, D2 and CP43 proteins, and Thr-4 in PsbH protein of photosystem II. Phosphorylation of Thr-4 in the wild type required both light and prior phosphorylation at Thr-2.  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|15729347|TAS  go_process photosystem II stabilization|GO:0042549|16040609|TAS  go_function protein kinase activity|GO:0004672|16040609|IMP  go_function kinase activity|GO:0016301||ISS  product STN8; kinase/ protein kinase  note STN8; FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: photosystem II stabilization; LOCATED IN: thylakoid, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: STN7 (Stt7 homolog STN7); kinase/ protein kinase (TAIR:AT1G68830.1); Has 33057 Blast hits to 33030 proteins in 1682 species: Archae - 26; Bacteria - 4053; Metazoa - 14243; Fungi - 4538; Plants - 3212; Viruses - 96; Other Eukaryotes - 6889 (source: NCBI BLink).  protein_id AT5G01920.1p  transcript_id AT5G01920.1  protein_id AT5G01920.1p  transcript_id AT5G01920.1  
At5g01930	chr5:000362767	0.0	C/362767-362867,362413-362689,362146-362340,361726-362060,361189-361627	AT5G01930.1  CDS  gene_syn T20L15.200, T20L15_200  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product (1-4)-beta-mannan endohydrolase, putative  note (1-4)-beta-mannan endohydrolase, putative; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, family 5, conserved site (InterPro:IPR018087), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: (1-4)-beta-mannan endohydrolase, putative (TAIR:AT5G66460.1); Has 442 Blast hits to 438 proteins in 116 species: Archae - 4; Bacteria - 111; Metazoa - 0; Fungi - 119; Plants - 187; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT5G01930.1p  transcript_id AT5G01930.1  protein_id AT5G01930.1p  transcript_id AT5G01930.1  
At5g01940	chr5:000364701	0.0	C/364701-364769,364526-364625,364357-364418,364135-364277,363913-364055,363732-363820,363594-363683	AT5G01940.1  CDS  gene_syn T20L15.210, T20L15_210  go_process translational initiation|GO:0006413||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_component cellular_component|GO:0005575||ND  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product eukaryotic translation initiation factor 2B family protein / eIF-2B family protein  note eukaryotic translation initiation factor 2B family protein / eIF-2B family protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF2/IF5, N-terminal (InterPro:IPR016189), Translation initiation factor IF2/IF5 (InterPro:IPR002735); BEST Arabidopsis thaliana protein match is: EIF2 BETA; translation initiation factor (TAIR:AT5G20920.3); Has 598 Blast hits to 598 proteins in 237 species: Archae - 153; Bacteria - 0; Metazoa - 140; Fungi - 121; Plants - 53; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).  protein_id AT5G01940.1p  transcript_id AT5G01940.1  protein_id AT5G01940.1p  transcript_id AT5G01940.1  
At5g01950	chr5:000369285	0.0	C/369285-369532,369011-369082,368833-368904,368583-368726,368419-368490,368266-368337,368114-368188,367941-368009,367795-367863,367615-367686,367434-367520,367278-367346,366682-367202,366430-366588,366062-366345,365919-365970,365585-365835,365040-365507	AT5G01950.1  CDS  gene_syn T20L15.220, T20L15_220  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product ATP binding / kinase/ protein serine/threonine kinase  note ATP binding / kinase/ protein serine/threonine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT1G06840.1); Has 135772 Blast hits to 98926 proteins in 3560 species: Archae - 81; Bacteria - 10823; Metazoa - 53020; Fungi - 7104; Plants - 46606; Viruses - 320; Other Eukaryotes - 17818 (source: NCBI BLink).  protein_id AT5G01950.1p  transcript_id AT5G01950.1  protein_id AT5G01950.1p  transcript_id AT5G01950.1  
At5g01960	chr5:000370811	0.0	W/370811-371303,371390-371466,371547-371715,371872-371960,372074-372238,372316-372393,372487-372590,372670-372775	AT5G01960.1  CDS  gene_syn T7H20.10, T7H20_10  go_component chloroplast|GO:0009507||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G65040.3); Has 3886 Blast hits to 3874 proteins in 280 species: Archae - 0; Bacteria - 0; Metazoa - 2090; Fungi - 415; Plants - 660; Viruses - 46; Other Eukaryotes - 675 (source: NCBI BLink).  protein_id AT5G01960.1p  transcript_id AT5G01960.1  protein_id AT5G01960.1p  transcript_id AT5G01960.1  
At5g01970	chr5:000374505	0.0	C/374505-374651,374166-374270,373942-374067,373660-373863,373401-373568,373014-373319	AT5G01970.1  CDS  gene_syn T7H20.20, T7H20_20  product unknown protein  note unknown protein; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30050.1); Has 154 Blast hits to 150 proteins in 51 species: Archae - 0; Bacteria - 5; Metazoa - 47; Fungi - 10; Plants - 60; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT5G01970.1p  transcript_id AT5G01970.1  protein_id AT5G01970.1p  transcript_id AT5G01970.1  
At5g01980	chr5:000375542	0.0	W/375542-377023	AT5G01980.1  CDS  gene_syn T7H20.30, T7H20_30  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G08139.1); Has 5396 Blast hits to 5384 proteins in 206 species: Archae - 0; Bacteria - 7; Metazoa - 2126; Fungi - 364; Plants - 2040; Viruses - 56; Other Eukaryotes - 803 (source: NCBI BLink).  protein_id AT5G01980.1p  transcript_id AT5G01980.1  protein_id AT5G01980.1p  transcript_id AT5G01980.1  
At5g01990	chr5:000379403	0.0	C/379403-379600,379232-379311,379029-379153,378830-378951,378298-378528,378121-378195,377907-378007,377775-377827,377373-377683	AT5G01990.1  CDS  gene_syn T7H20.40, T7H20_40  go_component integral to membrane|GO:0016021||IEA  go_process auxin polar transport|GO:0009926||ISS  go_function auxin:hydrogen symporter activity|GO:0009672||ISS  product auxin efflux carrier family protein  note auxin efflux carrier family protein; FUNCTIONS IN: auxin:hydrogen symporter activity; INVOLVED IN: auxin polar transport; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: auxin efflux carrier family protein (TAIR:AT1G71090.1); Has 303 Blast hits to 283 proteins in 69 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 152; Plants - 93; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT5G01990.1p  transcript_id AT5G01990.1  protein_id AT5G01990.1p  transcript_id AT5G01990.1  
At5g02000	chr5:000380155	0.0	C/380155-380595	AT5G02000.1  CDS  gene_syn T7H20.50, T7H20_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G02000.1p  transcript_id AT5G02000.1  protein_id AT5G02000.1p  transcript_id AT5G02000.1  
At5g02010	chr5:000383493	0.0	W/383493-383700,383834-383950,384040-384194,384276-384350,384445-384741,384828-385169,385252-385698	AT5G02010.1  CDS  gene_syn ATROPGEF7, KINASE PARTNER PROTEIN-LIKE, KPP-LIKE, ROPGEF7, T7H20.60, T7H20_60  gene ROPGEF7  function Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function Rho guanyl-nucleotide exchange factor activity|GO:0005089|15980860|ISS  product ROPGEF7; Rho guanyl-nucleotide exchange factor  note ROPGEF7; FUNCTIONS IN: Rho guanyl-nucleotide exchange factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: ROPGEF5 (ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 5); Rho guanyl-nucleotide exchange factor (TAIR:AT5G05940.1); Has 175 Blast hits to 175 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G02010.1p  transcript_id AT5G02010.1  protein_id AT5G02010.1p  transcript_id AT5G02010.1  
At5g02020	chr5:000387778	0.0	C/387778-387921,387275-387350,386999-387192	AT5G02020.2  CDS  gene_syn T7H20.70, T7H20_70  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59080.1); Has 24 Blast hits to 24 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G02020.2p  transcript_id AT5G02020.2  protein_id AT5G02020.2p  transcript_id AT5G02020.2  
At5g02020	chr5:000387778	0.0	C/387778-387921,387275-387350,387041-387192,386661-386721,386557-386573	AT5G02020.1  CDS  gene_syn T7H20.70, T7H20_70  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59080.1); Has 42 Blast hits to 42 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G02020.1p  transcript_id AT5G02020.1  protein_id AT5G02020.1p  transcript_id AT5G02020.1  
At5g02021	chr5:000388715	0.0	C/388715-388828	AT5G02021.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G02021.1p  transcript_id AT5G02021.1  protein_id AT5G02021.1p  transcript_id AT5G02021.1  
At5g02025	chr5:000389893	0.0	C/389893-389963	AT5G02025.1  tRNA  gene_syn 67574.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: GCC)  transcript_id AT5G02025.1  
At5g02030	chr5:000395754	0.0	W/395754-396473,397174-397574,397929-397989,398327-398872	AT5G02030.1  CDS  gene_syn BEL1-LIKE HOMEODOMAIN 9, BELLRINGER, BLH9, BLR, HB-6, LARSON, LSN, PENNYWISE, PNY, REPLUMLESS, RPL, T7H20.80, T7H20_80, VAAMANA, VAN  gene RPL  function Mutant has additional lateral organs and phyllotaxy defect. Encodes a homeodomain transcription factor. Has sequence similarity to the Arabidopsis ovule development regulator Bell1. Binds directly to the AGAMOUS cis-regulatory element. Its localization to the nucleus is dependent on the coexpression of either STM or BP.  go_component nucleus|GO:0005634|15019989|IDA  go_component cytosol|GO:0005829|15019989|IDA  go_process pattern specification process|GO:0007389|12897247|IMP  go_process xylem and phloem pattern formation|GO:0010051|12897247|IMP  go_process maintenance of floral meristem identity|GO:0010076|15120075|IGI  go_process maintenance of inflorescence meristem identity|GO:0010077|18298668|IGI  go_process fruit development|GO:0010154|16192305|IMP  go_process secondary shoot formation|GO:0010223|18298668|IGI  go_process vegetative to reproductive phase transition|GO:0010228|15120075|IGI  go_process negative regulation of transcription|GO:0016481|15155890|IMP  go_process shoot development|GO:0048367|16741748|IGI  go_process floral whorl morphogenesis|GO:0048457|15155890|IMP  go_process organ formation|GO:0048645|15120075|IGI  go_process internode patterning|GO:0080006|12897247|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function sequence-specific DNA binding|GO:0043565|15155890|IDA  product RPL (REPLUMLESS); DNA binding / sequence-specific DNA binding / transcription factor  note REPLUMLESS (RPL); FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding, DNA binding; INVOLVED IN: in 13 processes; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BLH8 (BEL1-LIKE HOMEODOMAIN 8); DNA binding / transcription factor (TAIR:AT2G27990.1); Has 4199 Blast hits to 4184 proteins in 270 species: Archae - 0; Bacteria - 2; Metazoa - 1796; Fungi - 213; Plants - 2029; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT5G02030.1p  transcript_id AT5G02030.1  protein_id AT5G02030.1p  transcript_id AT5G02030.1  
At5g02040	chr5:000401163	0.0	W/401163-401320,401527-401567,401661-401739,401837-401923,402005-402093,402182-402253,402368-402471	AT5G02040.1  CDS  gene_syn PRA1.A1, PRENYLATED RAB ACCEPTOR 1.A1, T7H20.90, T7H20_90  gene PRA1.A1  go_component endoplasmic reticulum|GO:0005783|18583532|IDA  go_process vesicle-mediated transport|GO:0016192|18583532|IDA  go_function molecular_function|GO:0003674||ND  product PRA1.A1 (PRENYLATED RAB ACCEPTOR 1.A1)  note PRENYLATED RAB ACCEPTOR 1.A1 (PRA1.A1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: PRA1.A2 (PRENYLATED RAB ACCEPTOR 1.A2) (TAIR:AT5G05987.1); Has 165 Blast hits to 165 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 96; Fungi - 8; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G02040.1p  transcript_id AT5G02040.1  protein_id AT5G02040.1p  transcript_id AT5G02040.1  
At5g02040	chr5:000401163	0.0	W/401163-401320,401527-401567,401661-401739,401837-401923,402005-402093,402182-402253,402368-402471	AT5G02040.2  CDS  gene_syn PRA1.A1, PRENYLATED RAB ACCEPTOR 1.A1, T7H20.90, T7H20_90  gene PRA1.A1  go_component endoplasmic reticulum|GO:0005783|18583532|IDA  go_process vesicle-mediated transport|GO:0016192|18583532|IDA  go_function molecular_function|GO:0003674||ND  product PRA1.A1 (PRENYLATED RAB ACCEPTOR 1.A1)  note PRENYLATED RAB ACCEPTOR 1.A1 (PRA1.A1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: PRA1.A2 (PRENYLATED RAB ACCEPTOR 1.A2) (TAIR:AT5G05987.1); Has 165 Blast hits to 165 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 96; Fungi - 8; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G02040.2p  transcript_id AT5G02040.2  protein_id AT5G02040.2p  transcript_id AT5G02040.2  
At5g02050	chr5:000403960	0.0	C/403960-404244,403493-403851,403239-403398	AT5G02050.1  CDS  gene_syn T7H20.100, T7H20_100  go_component mitochondrial matrix|GO:0005759||IEA  go_component chloroplast|GO:0009507||IEA  go_component mitochondrial matrix|GO:0005759||ISS  go_process biological_process|GO:0008150||ND  product mitochondrial glycoprotein family protein / MAM33 family protein  note mitochondrial glycoprotein family protein / MAM33 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, mitochondrial matrix; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial glycoprotein (InterPro:IPR003428); BEST Arabidopsis thaliana protein match is: mitochondrial glycoprotein family protein / MAM33 family protein (TAIR:AT3G55605.1); Has 329 Blast hits to 328 proteins in 116 species: Archae - 0; Bacteria - 2; Metazoa - 39; Fungi - 94; Plants - 115; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT5G02050.1p  transcript_id AT5G02050.1  protein_id AT5G02050.1p  transcript_id AT5G02050.1  
At5g02060	chr5:000404908	0.0	W/404908-405038,405346-405478,405580-405774	AT5G02060.1  CDS  gene_syn T7H20.110, T7H20_110  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane protein, putative  note integral membrane protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53850.1); Has 100 Blast hits to 100 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G02060.1p  transcript_id AT5G02060.1  protein_id AT5G02060.1p  transcript_id AT5G02060.1  
At5g02070	chr5:000407780	0.0	C/407780-408220,407214-407601,407063-407122,405895-406979	AT5G02070.1  CDS  gene_syn T7H20.120, T7H20_120  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase-related  note protein kinase-related; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G53840.1); Has 82296 Blast hits to 81648 proteins in 3178 species: Archae - 54; Bacteria - 6869; Metazoa - 36628; Fungi - 6362; Plants - 18181; Viruses - 385; Other Eukaryotes - 13817 (source: NCBI BLink).  protein_id AT5G02070.1p  transcript_id AT5G02070.1  protein_id AT5G02070.1p  transcript_id AT5G02070.1  
At5g02080	chr5:000409811	0.0	W/409811-409868,409946-410060,410162-410206,410328-410413,410734-410780,410932-411033,411116-411235,411318-411557	AT5G02080.1  CDS  gene_syn T7H20.130, T7H20_130  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product DNA/panthothenate metabolism flavoprotein family protein  note DNA/panthothenate metabolism flavoprotein family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DNA/pantothenate metabolism flavoprotein, C-terminal (InterPro:IPR007085); BEST Arabidopsis thaliana protein match is: ATCOAB (4-phospho-panto-thenoylcysteine synthetase); catalytic/ phosphopantothenate--cysteine ligase (TAIR:AT1G12350.1); Has 679 Blast hits to 660 proteins in 290 species: Archae - 40; Bacteria - 242; Metazoa - 109; Fungi - 90; Plants - 29; Viruses - 5; Other Eukaryotes - 164 (source: NCBI BLink).  protein_id AT5G02080.1p  transcript_id AT5G02080.1  protein_id AT5G02080.1p  transcript_id AT5G02080.1  
At5g02090	chr5:000412350	0.0	C/412350-412607	AT5G02090.1  CDS  gene_syn T7H20.140, T7H20_140  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 14 Blast hits to 14 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G02090.1p  transcript_id AT5G02090.1  protein_id AT5G02090.1p  transcript_id AT5G02090.1  
At5g02100	chr5:000413639	0.0	W/413639-413736,414011-414104,414211-414327,414422-414494,414572-414690,414781-414902,414991-415167,415276-415420,415500-415678,415779-416016	AT5G02100.1  CDS  gene_syn ORP3A, OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3A, T7H20.150, T7H20_150, UNE18, UNFERTILIZED EMBRYO SAC 18  gene UNE18  function Encodes a protein that binds to beta-sitosterol and localizes to the ER. The WFDE motif in ORP3a appears to be important for a direct interaction with PVA12 [Plant VAMP-Associated protein 12]. Mutation of this motif causes ORP3a to relocalize to the Golgi and cytosol. The interaction between PVA12 and ORP3a does not appear to be sterol-dependent.  go_component endoplasmic reticulum|GO:0005783|19207211|IDA  go_process steroid metabolic process|GO:0008202||ISS  go_process double fertilization forming a zygote and endosperm|GO:0009567|15634699|IMP  go_function oxysterol binding|GO:0008142||ISS  go_function sterol binding|GO:0032934|19207211|IDA  product UNE18 (UNFERTILIZED EMBRYO SAC 18); oxysterol binding / sterol binding  note UNFERTILIZED EMBRYO SAC 18 (UNE18); FUNCTIONS IN: oxysterol binding, sterol binding; INVOLVED IN: steroid metabolic process, double fertilization forming a zygote and endosperm; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Oxysterol-binding protein, conserved site (InterPro:IPR018494), Oxysterol-binding protein (InterPro:IPR000648); BEST Arabidopsis thaliana protein match is: ORP3B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3B); oxysterol binding (TAIR:AT3G09300.1); Has 1785 Blast hits to 1762 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 942; Fungi - 450; Plants - 154; Viruses - 0; Other Eukaryotes - 239 (source: NCBI BLink).  protein_id AT5G02100.1p  transcript_id AT5G02100.1  protein_id AT5G02100.1p  transcript_id AT5G02100.1  
At5g02110	chr5:000417087	0.0	W/417087-417347,417600-417686,417780-418074,418171-418553	AT5G02110.1  CDS  gene_syn CYCD7, CYCD7;1, CYCLIN D7;1, T7H20.160, T7H20_160  gene CYCD7;1  go_component nucleus|GO:0005634||IEA  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase activity|GO:0004693||ISS  product CYCD7;1 (CYCLIN D7;1); cyclin-dependent protein kinase  note CYCLIN D7;1 (CYCD7;1); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCD3;2 (CYCLIN D3;2); cyclin-dependent protein kinase (TAIR:AT5G67260.1); Has 1833 Blast hits to 1833 proteins in 226 species: Archae - 0; Bacteria - 0; Metazoa - 843; Fungi - 248; Plants - 577; Viruses - 0; Other Eukaryotes - 165 (source: NCBI BLink).  protein_id AT5G02110.1p  transcript_id AT5G02110.1  protein_id AT5G02110.1p  transcript_id AT5G02110.1  
At5g02120	chr5:000419144	0.0	W/419144-419284,419357-419479,419565-419633	AT5G02120.1  CDS  gene_syn OHP, ONE HELIX PROTEIN, T7H20.170, T7H20_170  gene OHP  function Encodes a one helix protein homologous to cyanobacterial high-light inducible proteins. The protein is localized to the thylakoid membrane and its transcript is transiently induced by exposure to high light conditions.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|10794534|IDA  go_process response to high light intensity|GO:0009644|10794534|IEP  go_function molecular_function|GO:0003674||ND  product OHP (ONE HELIX PROTEIN)  note ONE HELIX PROTEIN (OHP); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to high light intensity; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 41 Blast hits to 41 proteins in 15 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G02120.1p  transcript_id AT5G02120.1  protein_id AT5G02120.1p  transcript_id AT5G02120.1  
At5g02130	chr5:000421760	0.0	C/421760-421958,421539-421665,421373-421446,421252-421298,421024-421162,420886-420930,420610-420799,420463-420524,420267-420367,420138-420192,420011-420055,419747-419925	AT5G02130.1  CDS  gene_syn NDP1, RANDOM POTATO CDNA CLONE, T7H20.180, T7H20_180  gene NDP1  function mutant has Growth rate reduction, increased salt sensitivity; Putative Kinesin Light Chain  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product NDP1 (RANDOM POTATO CDNA CLONE); binding  note RANDOM POTATO CDNA CLONE (NDP1); FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990); Has 182 Blast hits to 132 proteins in 44 species: Archae - 4; Bacteria - 89; Metazoa - 50; Fungi - 8; Plants - 20; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT5G02130.1p  transcript_id AT5G02130.1  protein_id AT5G02130.1p  transcript_id AT5G02130.1  
At5g02140	chr5:000423384	0.0	W/423384-423438,423533-424205,424281-424437	AT5G02140.1  CDS  gene_syn T7H20.190, T7H20_190  go_component endomembrane system|GO:0012505||IEA  go_process response to other organism|GO:0051707||ISS  go_function molecular_function|GO:0003674||ND  product thaumatin-like protein, putative  note thaumatin-like protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: thaumatin-like protein, putative / pathogenesis-related protein, putative (TAIR:AT1G73620.1); Has 1058 Blast hits to 1034 proteins in 143 species: Archae - 0; Bacteria - 22; Metazoa - 48; Fungi - 63; Plants - 915; Viruses - 2; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G02140.1p  transcript_id AT5G02140.1  protein_id AT5G02140.1p  transcript_id AT5G02140.1  
At5g02150	chr5:000425643	0.0	C/425643-425754,425508-425558,425193-425414,424978-425080,424481-424850	AT5G02150.2  CDS  gene_syn T7H20.200, T7H20_200  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  product binding  note binding; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein (TAIR:AT3G09350.3); Has 400 Blast hits to 398 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 103; Plants - 92; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT5G02150.2p  transcript_id AT5G02150.2  protein_id AT5G02150.2p  transcript_id AT5G02150.2  
At5g02150	chr5:000425983	0.0	C/425983-426068,425643-425785,425508-425558,425193-425414,424978-425080,424481-424850	AT5G02150.1  CDS  gene_syn T7H20.200, T7H20_200  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  product binding  note binding; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein (TAIR:AT3G09350.1); Has 416 Blast hits to 414 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 169; Fungi - 103; Plants - 93; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT5G02150.1p  transcript_id AT5G02150.1  protein_id AT5G02150.1p  transcript_id AT5G02150.1  
At5g02160	chr5:000426392	0.0	W/426392-426639,426883-427024	AT5G02160.1  CDS  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 20 Blast hits to 20 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G02160.1p  transcript_id AT5G02160.1  protein_id AT5G02160.1p  transcript_id AT5G02160.1  
At5g02170	chr5:000427859	0.0	W/427859-428016,428113-428384,428590-428804,428894-428917,428996-429176,429259-429478,429572-429707,429801-429972,430081-430124,430219-430281,430377-430472	AT5G02170.1  CDS  gene_syn T7H20.220, T7H20_220  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product amino acid transporter family protein  note amino acid transporter family protein; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid transporter family protein (TAIR:AT5G02180.1); Has 3592 Blast hits to 3559 proteins in 197 species: Archae - 9; Bacteria - 27; Metazoa - 1590; Fungi - 627; Plants - 823; Viruses - 3; Other Eukaryotes - 513 (source: NCBI BLink).  protein_id AT5G02170.1p  transcript_id AT5G02170.1  protein_id AT5G02170.1p  transcript_id AT5G02170.1  
At5g02180	chr5:000431034	0.0	W/431034-431254,431345-431625,431715-431929,432008-432031,432131-432314,432400-432619,432700-432835,432908-433073,433157-433200,433282-433344,433446-433544	AT5G02180.1  CDS  gene_syn T7H20.230, T7H20_230  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product amino acid transporter family protein  note amino acid transporter family protein; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid transporter family protein (TAIR:AT3G09330.1); Has 3730 Blast hits to 3718 proteins in 245 species: Archae - 9; Bacteria - 110; Metazoa - 1580; Fungi - 663; Plants - 794; Viruses - 8; Other Eukaryotes - 566 (source: NCBI BLink).  protein_id AT5G02180.1p  transcript_id AT5G02180.1  protein_id AT5G02180.1p  transcript_id AT5G02180.1  
At5g02190	chr5:000435322	0.0	W/435322-436683	AT5G02190.1  CDS  gene_syn ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, ATASP38, PCS1, PHYTOCHELATIN SYNTHASE 1, PROMOTION OF CELL SURVIVAL 1, T7H20.240, T7H20_240  gene PCS1  function encodes an aspartic protease, has an important role in determining cell fate during embryonic development and in reproduction processes. The loss-of-function mutation of PCS1 causes degeneration of both male and female gametophytes and excessive cell death of developing embryos during torpedo stage.  go_component endoplasmic reticulum|GO:0005783|15723040|IDA  go_process programmed cell death|GO:0012501|15723040|IMP  go_function aspartic-type endopeptidase activity|GO:0004190|15723040|ISS  go_function peptidase activity|GO:0008233|15723040|IPI  product PCS1 (PROMOTION OF CELL SURVIVAL 1); aspartic-type endopeptidase/ peptidase  note PROMOTION OF CELL SURVIVAL 1 (PCS1); FUNCTIONS IN: peptidase activity, aspartic-type endopeptidase activity; INVOLVED IN: programmed cell death; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT2G39710.1); Has 1249 Blast hits to 1237 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 74; Plants - 1080; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT5G02190.1p  transcript_id AT5G02190.1  protein_id AT5G02190.1p  transcript_id AT5G02190.1  
At5g02200	chr5:000437520	0.0	W/437520-437563,438205-438692,438779-438852	AT5G02200.2  CDS  gene_syn FAR-RED-ELONGATED HYPOCOTYL1-LIKE, FHL, T7H20.250, T7H20_250  gene FHL  function Encodes a small plant-specific protein with both nuclear localization and nuclear export signals that is specifically required, together with FHY1, for the light-regulated nuclear accumulation of phyA.  go_component nuclear speck|GO:0016607|16861711|IDA  go_process response to blue light|GO:0009637|16045472|IMP  go_process response to far red light|GO:0010218|16861711|IGI  go_process maintenance of protein location in nucleus|GO:0051457|16861711|IMP  go_function protein binding|GO:0005515|16861711|IPI  product FHL (FAR-RED-ELONGATED HYPOCOTYL1-LIKE); protein binding  note FAR-RED-ELONGATED HYPOCOTYL1-LIKE (FHL); FUNCTIONS IN: protein binding; INVOLVED IN: maintenance of protein location in nucleus, response to blue light, response to far red light; LOCATED IN: nuclear speck; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: FHY1 (FAR-RED ELONGATED HYPOCOTYL 1); transcription regulator (TAIR:AT2G37678.1); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G02200.2p  transcript_id AT5G02200.2  protein_id AT5G02200.2p  transcript_id AT5G02200.2  
At5g02200	chr5:000438221	0.0	W/438221-438692,438779-438852	AT5G02200.1  CDS  gene_syn FAR-RED-ELONGATED HYPOCOTYL1-LIKE, FHL, T7H20.250, T7H20_250  gene FHL  function Encodes a small plant-specific protein with both nuclear localization and nuclear export signals that is specifically required, together with FHY1, for the light-regulated nuclear accumulation of phyA.  go_component nuclear speck|GO:0016607|16861711|IDA  go_process response to blue light|GO:0009637|16045472|IMP  go_process response to far red light|GO:0010218|16861711|IGI  go_process maintenance of protein location in nucleus|GO:0051457|16861711|IMP  go_function protein binding|GO:0005515|16861711|IPI  product FHL (FAR-RED-ELONGATED HYPOCOTYL1-LIKE); protein binding  note FAR-RED-ELONGATED HYPOCOTYL1-LIKE (FHL); FUNCTIONS IN: protein binding; INVOLVED IN: maintenance of protein location in nucleus, response to blue light, response to far red light; LOCATED IN: nuclear speck; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: FHY1 (FAR-RED ELONGATED HYPOCOTYL 1); transcription regulator (TAIR:AT2G37678.1); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G02200.1p  transcript_id AT5G02200.1  protein_id AT5G02200.1p  transcript_id AT5G02200.1  
At5g02210	chr5:000439728	0.0	C/439728-439874,439253-439591	AT5G02210.1  CDS  gene_syn T7H20.260, T7H20_260  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: GCK (InterPro:IPR012891); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14060.1); Has 41 Blast hits to 40 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G02210.1p  transcript_id AT5G02210.1  protein_id AT5G02210.1p  transcript_id AT5G02210.1  
At5g02220	chr5:000441884	0.0	C/441884-442102	AT5G02220.1  CDS  gene_syn T7H20.270, T7H20_270  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; Has 29 Blast hits to 29 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G02220.1p  transcript_id AT5G02220.1  protein_id AT5G02220.1p  transcript_id AT5G02220.1  
At5g02230	chr5:000449132	0.0	W/449132-449192,449278-449343,449425-449522,449601-449726,449826-450095,450182-450247,450352-450507	AT5G02230.1  CDS  gene_syn T7H20.280, T7H20_280  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity|GO:0016787||ISS  product haloacid dehalogenase-like hydrolase family protein  note haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Pyrimidine 5-nucleotidase (InterPro:IPR010237), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: haloacid dehalogenase-like hydrolase family protein (TAIR:AT5G59490.1); Has 1779 Blast hits to 1779 proteins in 310 species: Archae - 10; Bacteria - 433; Metazoa - 0; Fungi - 93; Plants - 108; Viruses - 0; Other Eukaryotes - 1135 (source: NCBI BLink).  protein_id AT5G02230.1p  transcript_id AT5G02230.1  protein_id AT5G02230.1p  transcript_id AT5G02230.1  
At5g02230	chr5:000449132	0.0	W/449132-449192,449278-449343,449425-449522,449601-449726,449826-450095,450182-450247,450352-450507	AT5G02230.2  CDS  gene_syn T7H20.280, T7H20_280  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity|GO:0016787||ISS  product haloacid dehalogenase-like hydrolase family protein  note haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Pyrimidine 5-nucleotidase (InterPro:IPR010237), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: haloacid dehalogenase-like hydrolase family protein (TAIR:AT5G59490.1); Has 1779 Blast hits to 1779 proteins in 310 species: Archae - 10; Bacteria - 433; Metazoa - 0; Fungi - 93; Plants - 108; Viruses - 0; Other Eukaryotes - 1135 (source: NCBI BLink).  protein_id AT5G02230.2p  transcript_id AT5G02230.2  protein_id AT5G02230.2p  transcript_id AT5G02230.2  
At5g02240	chr5:000451502	0.0	W/451502-451550,451707-451978,452068-452104,452178-452275,452366-452427,452645-452768,452865-452984	AT5G02240.1  CDS  gene_syn T1E22.5  function Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  go_process response to abscisic acid stimulus|GO:0009737|18768909|IEP  product binding / catalytic/ coenzyme binding  note binding / catalytic/ coenzyme binding; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: apoplast, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: binding / catalytic/ coenzyme binding (TAIR:AT2G37660.1); Has 1667 Blast hits to 1629 proteins in 418 species: Archae - 25; Bacteria - 1132; Metazoa - 6; Fungi - 21; Plants - 233; Viruses - 0; Other Eukaryotes - 250 (source: NCBI BLink).  protein_id AT5G02240.1p  transcript_id AT5G02240.1  protein_id AT5G02240.1p  transcript_id AT5G02240.1  
At5g02244	chr5:000453814	0.0	W/453814-454294	AT5G02244.1  pseudogenic_transcript  pseudo  function Pseudogene of AT3G57870; AHUS5 (SUMO CONJUGATION ENZYME 1); ubiquitin-protein ligase  
At5g02250	chr5:000454902	0.0	W/454902-455200,455277-455436,455528-455641,455758-455835,455900-456031,456396-456617,456799-456981,457116-457178,457296-457402,457479-457628,457715-457874,458070-458465,458636-458863,458944-459063	AT5G02250.1  CDS  gene_syn ARABIDOPSIS THALIANA MITOCHONDRIAL RNASE II, ATMTRNASEII, EMB2730, EMBRYO DEFECTIVE 2730, RIBONUCLEOTIDE REDUCTASE 1, RNR1, T1E22.10, T1E22_10  gene EMB2730  function Encodes a exoribonuclease involved in rRNA processing in mitochondria and chloroplasts.Loss of function mutations are pale green and require supplementation with sucrose for germination and early development. Plants are pale green due to defects in chloroplast biogenesis.  go_component chloroplast|GO:0009507|18431481|IDA  go_component mitochondrion|GO:0005739|15037609|IDA  go_component chloroplast|GO:0009507|15604703|IDA  go_process rRNA processing|GO:0006364|15891117|IMP  go_process chloroplast organization|GO:0009658|15891117|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function 3 -5 -exoribonuclease activity|GO:0000175|15037609|IDA  go_function RNA binding|GO:0003723||ISS  go_function ribonuclease activity|GO:0004540||ISS  product EMB2730 (EMBRYO DEFECTIVE 2730); 3 -5 -exoribonuclease/ RNA binding / ribonuclease  note EMBRYO DEFECTIVE 2730 (EMB2730); FUNCTIONS IN: ribonuclease activity, 3 -5 -exoribonuclease activity, RNA binding; INVOLVED IN: embryonic development ending in seed dormancy, chloroplast organization, rRNA processing; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease II and R (InterPro:IPR001900); BEST Arabidopsis thaliana protein match is: EMB2763 (EMBRYO DEFECTIVE 2763); RNA binding / ribonuclease (TAIR:AT2G17510.1); Has 4880 Blast hits to 4863 proteins in 1276 species: Archae - 25; Bacteria - 2946; Metazoa - 312; Fungi - 267; Plants - 51; Viruses - 2; Other Eukaryotes - 1277 (source: NCBI BLink).  protein_id AT5G02250.1p  transcript_id AT5G02250.1  protein_id AT5G02250.1p  transcript_id AT5G02250.1  
At5g02260	chr5:000463224	0.0	W/463224-463371,463465-463783,464531-464840	AT5G02260.1  CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN A9, ATEXP9, ATEXPA9, ATHEXP ALPHA 1.10, EXP9, T1E22.20, T1E22_20  gene ATEXPA9  function member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)  go_component chloroplast|GO:0009507|15028209|IDA  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828||ISS  go_process plant-type cell wall modification during multidimensional cell growth|GO:0009831||ISS  product ATEXPA9 (ARABIDOPSIS THALIANA EXPANSIN A9)  note ARABIDOPSIS THALIANA EXPANSIN A9 (ATEXPA9); INVOLVED IN: plant-type cell wall modification during multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: EXP3 (TAIR:AT2G37640.1); Has 1442 Blast hits to 1440 proteins in 125 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 29; Plants - 1381; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT5G02260.1p  transcript_id AT5G02260.1  protein_id AT5G02260.1p  transcript_id AT5G02260.1  
At5g02270	chr5:000468864	0.0	C/468864-469041,468646-468779,468404-468523,467990-468085,467669-467821,467269-467574	AT5G02270.1  CDS  gene_syn ATNAP9, T1E22.30, T1E22_30  gene ATNAP9  function member of NAP subfamily  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  product ATNAP9; transporter  note ATNAP9; FUNCTIONS IN: transporter activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: POP1; transporter (TAIR:AT5G44110.1); Has 118510 Blast hits to 112633 proteins in 2155 species: Archae - 2543; Bacteria - 90788; Metazoa - 2356; Fungi - 1061; Plants - 820; Viruses - 2; Other Eukaryotes - 20940 (source: NCBI BLink).  protein_id AT5G02270.1p  transcript_id AT5G02270.1  protein_id AT5G02270.1p  transcript_id AT5G02270.1  
At5g02280	chr5:000469377	0.0	W/469377-469436,469681-469849,469933-470129	AT5G02280.1  CDS  gene_syn T1E22.40, T1E22_40  go_component cis-Golgi network|GO:0005801||IEA  go_process transport|GO:0006810||IEA  go_process ER to Golgi vesicle-mediated transport|GO:0006888||IEA  go_function molecular_function|GO:0003674||ND  product synbindin, putative  note synbindin, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, ER to Golgi vesicle-mediated transport; LOCATED IN: cis-Golgi network; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sybindin-like protein (InterPro:IPR007233), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: synbindin, putative (TAIR:AT1G51160.2); Has 419 Blast hits to 413 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 194; Fungi - 100; Plants - 56; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT5G02280.1p  transcript_id AT5G02280.1  protein_id AT5G02280.1p  transcript_id AT5G02280.1  
At5g02290	chr5:000472346	0.0	C/472346-472397,471582-471889,471311-471446,471080-471222,470873-470996,470387-470793	AT5G02290.1  CDS  gene_syn NAK, PROTEIN KINASE NAK, T1E22.50, T1E22_50  gene NAK  function Encodes a candidate protein kinase NAK that is similar to the oncogenes met and abl.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product NAK; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note NAK; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: APK1A; kinase/ protein serine/threonine kinase (TAIR:AT1G07570.2); Has 83238 Blast hits to 82310 proteins in 2905 species: Archae - 40; Bacteria - 7394; Metazoa - 36860; Fungi - 6250; Plants - 18667; Viruses - 339; Other Eukaryotes - 13688 (source: NCBI BLink).  protein_id AT5G02290.1p  transcript_id AT5G02290.1  protein_id AT5G02290.1p  transcript_id AT5G02290.1  
At5g02290	chr5:000472346	0.0	C/472346-472397,471582-471889,471311-471446,471080-471222,470873-470996,470387-470793	AT5G02290.2  CDS  gene_syn NAK, PROTEIN KINASE NAK, T1E22.50, T1E22_50  gene NAK  function Encodes a candidate protein kinase NAK that is similar to the oncogenes met and abl.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product NAK; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note NAK; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: APK1A; kinase/ protein serine/threonine kinase (TAIR:AT1G07570.2); Has 83238 Blast hits to 82310 proteins in 2905 species: Archae - 40; Bacteria - 7394; Metazoa - 36860; Fungi - 6250; Plants - 18667; Viruses - 339; Other Eukaryotes - 13688 (source: NCBI BLink).  protein_id AT5G02290.2p  transcript_id AT5G02290.2  protein_id AT5G02290.2p  transcript_id AT5G02290.2  
At5g02310	chr5:000474279	0.0	W/474279-474341,474495-475601,475741-476942,477083-477223,477472-477715,477799-478500,478830-479024,479134-479720,479938-479989,480073-480694,480839-481020,481101-481633,481731-481835,481934-482000,482141-482218,482324-482392,482481-482552	AT5G02310.1  CDS  gene_syn AT5G02300, PROTEOLYSIS 6, PRT6, T1E22.70, T1E22_70  gene PRT6  function Encodes PROTEOLYSIS6 (PRT6), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Another component of the N-end rule pathway is arginyl-tRNA:protein arginyltransferase (ATE). Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination.  go_process ubiquitin-dependent protein catabolic process|GO:0006511|17572409|IDA  go_process cuticle hydrocarbon biosynthetic process|GO:0006723|17624331|IMP  go_process response to abscisic acid stimulus|GO:0009737|19255443|IMP  go_process wax biosynthetic process|GO:0010025|17624331|IMP  go_process regulation of seed germination|GO:0010029|19255443|IMP  go_process regulation of lipid catabolic process|GO:0050994|19255443|IMP  go_function ubiquitin-protein ligase activity|GO:0004842|17572409|IDA  product PRT6 (PROTEOLYSIS 6); ubiquitin-protein ligase  note PROTEOLYSIS 6 (PRT6); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: in 6 processes; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, N-recognin, metazoa (InterPro:IPR013993), Zinc finger, N-recognin (InterPro:IPR003126); Has 1433 Blast hits to 589 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 798; Fungi - 379; Plants - 62; Viruses - 0; Other Eukaryotes - 194 (source: NCBI BLink).  protein_id AT5G02310.1p  transcript_id AT5G02310.1  protein_id AT5G02310.1p  transcript_id AT5G02310.1  
At5g02320	chr5:000486306	0.0	C/486306-486347,485784-485935,485587-485638,485378-485435,484985-485079,484784-484887,484568-484696,483445-484459	AT5G02320.1  CDS  gene_syn ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, ATMYB3R5, MYB DOMAIN PROTEIN 3R-5, MYB3R-5, T1E22.80, T1E22_80  gene MYB3R-5  function Encodes a putative c-MYB-like transcription factor of the MYB3R factor gene family (MYB3R5).  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677|11597504|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product MYB3R-5 (MYB DOMAIN PROTEIN 3R-5); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 3R-5 (MYB3R-5); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB3R-3 (myb domain protein 3R-3); DNA binding / transcription factor (TAIR:AT3G09370.1); Has 9338 Blast hits to 6151 proteins in 375 species: Archae - 0; Bacteria - 0; Metazoa - 948; Fungi - 765; Plants - 4846; Viruses - 6; Other Eukaryotes - 2773 (source: NCBI BLink).  protein_id AT5G02320.1p  transcript_id AT5G02320.1  protein_id AT5G02320.1p  transcript_id AT5G02320.1  
At5g02330	chr5:000487272	0.0	C/487272-489242	AT5G02330.1  CDS  gene_syn T1E22.90, T1E22_90  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT2G13900.1); Has 916 Blast hits to 461 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 0; Plants - 896; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G02330.1p  transcript_id AT5G02330.1  protein_id AT5G02330.1p  transcript_id AT5G02330.1  
At5g02340	chr5:000492255	0.0	C/492255-494150	AT5G02340.1  CDS  gene_syn T1E22.100, T1E22_100  go_component intracellular|GO:0005622||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), DC1 (InterPro:IPR004146), Zinc finger, RanBP2-type (InterPro:IPR001876), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT2G13950.1); Has 907 Blast hits to 466 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 903; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G02340.1p  transcript_id AT5G02340.1  protein_id AT5G02340.1p  transcript_id AT5G02340.1  
At5g02350	chr5:000495311	0.0	C/495311-497266	AT5G02350.1  CDS  gene_syn T1E22.110, T1E22_110  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT2G13900.1); Has 825 Blast hits to 443 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 815; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G02350.1p  transcript_id AT5G02350.1  protein_id AT5G02350.1p  transcript_id AT5G02350.1  
At5g02360	chr5:000502020	0.0	C/502020-502329,500961-501557,500626-500747	AT5G02360.1  CDS  gene_syn T1E22.120, T1E22_120  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, RanBP2-type (InterPro:IPR001876), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT1G53340.1); Has 505 Blast hits to 402 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 505; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G02360.1p  transcript_id AT5G02360.1  protein_id AT5G02360.1p  transcript_id AT5G02360.1  
At5g02370	chr5:000503444	0.0	W/503444-503649,503744-503912,504031-504406,504506-504711,504816-505120,505202-505265,505406-505505,505586-505803,505887-505933,506037-506058,506127-506189,506278-506388	AT5G02370.1  CDS  gene_syn T1E22.130, T1E22_130  go_component chloroplast|GO:0009507|18431481|IDA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function sequence-specific DNA binding|GO:0043565||IEA  go_function microtubule motor activity|GO:0003777||ISS  product kinesin motor protein-related  note kinesin motor protein-related; FUNCTIONS IN: microtubule motor activity, sequence-specific DNA binding, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATP binding / microtubule motor (TAIR:AT5G23910.1); Has 7488 Blast hits to 7156 proteins in 245 species: Archae - 0; Bacteria - 21; Metazoa - 3823; Fungi - 875; Plants - 885; Viruses - 0; Other Eukaryotes - 1884 (source: NCBI BLink).  protein_id AT5G02370.1p  transcript_id AT5G02370.1  protein_id AT5G02370.1p  transcript_id AT5G02370.1  
At5g02380	chr5:000507100	0.0	C/507100-507164,506755-506923	AT5G02380.1  CDS  gene_syn METALLOTHIONEIN 2B, MT2B, T1E22.140, T1E22_140  gene MT2B  function cysteine-rich protein with copper-binding activity  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function copper ion binding|GO:0005507|9112777|IDA  product MT2B (METALLOTHIONEIN 2B); copper ion binding  note METALLOTHIONEIN 2B (MT2B); FUNCTIONS IN: copper ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Plant metallothionein, family 15 (InterPro:IPR000347); BEST Arabidopsis thaliana protein match is: MT2A (METALLOTHIONEIN 2A); copper ion binding (TAIR:AT3G09390.1); Has 560 Blast hits to 560 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 0; Plants - 541; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G02380.1p  transcript_id AT5G02380.1  protein_id AT5G02380.1p  transcript_id AT5G02380.1  
At5g02385	chr5:000508430	0.0	C/508430-508502	AT5G02385.1  tRNA  gene_syn 67575.TRNA-LYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Lys (anticodon: CTT)  transcript_id AT5G02385.1  
At5g02390	chr5:000511554	0.0	C/511554-511710,511195-511283,509447-511112,508764-509359	AT5G02390.1  CDS  gene_syn T1E22.150, T1E22_150  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07620.1); Has 4275 Blast hits to 3165 proteins in 235 species: Archae - 10; Bacteria - 132; Metazoa - 1418; Fungi - 331; Plants - 227; Viruses - 15; Other Eukaryotes - 2142 (source: NCBI BLink).  protein_id AT5G02390.1p  transcript_id AT5G02390.1  protein_id AT5G02390.1p  transcript_id AT5G02390.1  
At5g02390	chr5:000511554	0.0	C/511554-511710,511195-511283,509447-511112,509064-509359,508834-508881	AT5G02390.2  CDS  gene_syn T1E22.150, T1E22_150  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; Has 2787 Blast hits to 2145 proteins in 202 species: Archae - 8; Bacteria - 97; Metazoa - 835; Fungi - 198; Plants - 79; Viruses - 7; Other Eukaryotes - 1563 (source: NCBI BLink).  protein_id AT5G02390.2p  transcript_id AT5G02390.2  protein_id AT5G02390.2p  transcript_id AT5G02390.2  
At5g02400	chr5:000513561	0.0	W/513561-515090,515178-515291,515420-515684,515781-515896	AT5G02400.1  CDS  gene_syn PLL2, T1E22.160, T1E22_160  gene PLL2  function Encodes a protein with similarity to the POL locus which is a novel protein phosphatase 2C. Ubiquitously expressed. No phenotype observed in homozygous null mutant background.  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PLL2; catalytic/ protein serine/threonine phosphatase  note PLL2; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation, N-terminal protein myristoylation; LOCATED IN: protein serine/threonine phosphatase complex; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: PLL3; catalytic/ protein serine/threonine phosphatase (TAIR:AT3G09400.1); Has 1801 Blast hits to 1785 proteins in 184 species: Archae - 0; Bacteria - 3; Metazoa - 378; Fungi - 202; Plants - 861; Viruses - 17; Other Eukaryotes - 340 (source: NCBI BLink).  protein_id AT5G02400.1p  transcript_id AT5G02400.1  protein_id AT5G02400.1p  transcript_id AT5G02400.1  
At5g02410	chr5:000519545	0.0	C/519545-519634,519375-519463,518820-519156,518462-518723,518216-518353,517907-518111,517676-517818,517319-517584	AT5G02410.1  CDS  gene_syn T1E22.170, T1E22_170  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_function transferase activity, transferring hexosyl groups|GO:0016758||IEA  go_process biological_process|GO:0008150||ND  product DIE2/ALG10 family  note DIE2/ALG10 family; FUNCTIONS IN: transferase activity, transferring hexosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-1, 2 glucosyltransferase Alg10 (InterPro:IPR016900), Glycosyltransferase, ALG10 (InterPro:IPR007006); Has 269 Blast hits to 222 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 103; Fungi - 131; Plants - 14; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT5G02410.1p  transcript_id AT5G02410.1  protein_id AT5G02410.1p  transcript_id AT5G02410.1  
At5g02420	chr5:000523501	0.0	W/523501-523848	AT5G02420.1  CDS  gene_syn T22P11.10, T22P11_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G08180.1); Has 50 Blast hits to 50 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G02420.1p  transcript_id AT5G02420.1  protein_id AT5G02420.1p  transcript_id AT5G02420.1  
At5g02430	chr5:000526592	0.0	W/526592-528184,528278-528368,528455-528612,528692-528743,528850-528929,529011-529104,529190-529839	AT5G02430.1  CDS  gene_syn T22P11.20, T22P11_20  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_process signal transduction|GO:0007165||ISS  go_function signal transducer activity|GO:0004871||ISS  product WD-40 repeat family protein  note WD-40 repeat family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: signal transduction; LOCATED IN: heterotrimeric G-protein complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein (TAIR:AT2G37670.1); Has 27390 Blast hits to 16979 proteins in 544 species: Archae - 46; Bacteria - 3784; Metazoa - 12227; Fungi - 5297; Plants - 2409; Viruses - 3; Other Eukaryotes - 3624 (source: NCBI BLink).  protein_id AT5G02430.1p  transcript_id AT5G02430.1  protein_id AT5G02430.1p  transcript_id AT5G02430.1  
At5g02435	chr5:000530822	0.0	W/530822-530895	AT5G02435.1  tRNA  gene_syn 67575.TRNA-VAL-1, 67576.TRNA-VAL-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Val (anticodon: AAC)  transcript_id AT5G02435.1  
At5g02440	chr5:000531066	0.0	W/531066-531077,531190-531360,532378-532725	AT5G02440.1  CDS  gene_syn T22P11.30, T22P11_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; Has 29 Blast hits to 29 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G02440.1p  transcript_id AT5G02440.1  protein_id AT5G02440.1p  transcript_id AT5G02440.1  
At5g02450	chr5:000533501	0.0	W/533501-533590,534039-534238,534358-534394	AT5G02450.1  CDS  go_component plasma membrane|GO:0005886|17151019|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L36 (RPL36C)  note 60S ribosomal protein L36 (RPL36C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, ribosome, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L36e (InterPro:IPR000509); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L36 (RPL36B) (TAIR:AT3G53740.4); Has 585 Blast hits to 585 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 295; Fungi - 95; Plants - 95; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).  protein_id AT5G02450.1p  transcript_id AT5G02450.1  protein_id AT5G02450.1p  transcript_id AT5G02450.1  
At5g02460	chr5:000541002	0.0	C/541002-541058,539549-540691	AT5G02460.1  CDS  gene_syn T22P11.50, T22P11_50  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product Dof-type zinc finger domain-containing protein  note Dof-type zinc finger domain-containing protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT2G37590.1); Has 755 Blast hits to 719 proteins in 68 species: Archae - 0; Bacteria - 4; Metazoa - 87; Fungi - 8; Plants - 624; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT5G02460.1p  transcript_id AT5G02460.1  protein_id AT5G02460.1p  transcript_id AT5G02460.1  
At5g02470	chr5:000544305	0.0	C/544305-544423,544156-544217,544029-544072,543718-543789,543489-543629,543326-543394,543006-543104,542857-542927,542562-542763	AT5G02470.1  CDS  gene_syn DPA, DPA TRANSCRIPTION FACTOR, T22P11.60, T22P11_60  gene DPA  function core cell cycle genes  go_component transcription factor complex|GO:0005667||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product DPA; transcription factor  note DPA; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: transcription factor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Transcription factor E2F/dimerisation partner (TDP) (InterPro:IPR003316), Transcription factor DP, C-terminal (InterPro:IPR014889), Transcription factor DP (InterPro:IPR015648), Transcription factor DP, subgroup (InterPro:IPR016556); BEST Arabidopsis thaliana protein match is: DPB; protein binding / protein heterodimerization (TAIR:AT5G03415.1); Has 330 Blast hits to 330 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 199; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT5G02470.1p  transcript_id AT5G02470.1  protein_id AT5G02470.1p  transcript_id AT5G02470.1  
At5g02470	chr5:000544305	0.0	C/544305-544423,544156-544217,544029-544072,543718-543789,543489-543629,543326-543394,543006-543104,542857-542927,542562-542763	AT5G02470.2  CDS  gene_syn DPA, DPA TRANSCRIPTION FACTOR, T22P11.60, T22P11_60  gene DPA  function core cell cycle genes  go_component transcription factor complex|GO:0005667||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product DPA; transcription factor  note DPA; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: transcription factor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Transcription factor E2F/dimerisation partner (TDP) (InterPro:IPR003316), Transcription factor DP, C-terminal (InterPro:IPR014889), Transcription factor DP (InterPro:IPR015648), Transcription factor DP, subgroup (InterPro:IPR016556); BEST Arabidopsis thaliana protein match is: DPB; protein binding / protein heterodimerization (TAIR:AT5G03415.1); Has 330 Blast hits to 330 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 199; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT5G02470.2p  transcript_id AT5G02470.2  protein_id AT5G02470.2p  transcript_id AT5G02470.2  
At5g02470	chr5:000544305	0.0	C/544305-544423,544156-544217,544029-544072,543718-543789,543489-543629,543326-543394,543006-543104,542857-542927,542562-542763	AT5G02470.3  CDS  gene_syn DPA, DPA TRANSCRIPTION FACTOR, T22P11.60, T22P11_60  gene DPA  function core cell cycle genes  go_component transcription factor complex|GO:0005667||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product DPA; transcription factor  note DPA; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: transcription factor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Transcription factor E2F/dimerisation partner (TDP) (InterPro:IPR003316), Transcription factor DP, C-terminal (InterPro:IPR014889), Transcription factor DP (InterPro:IPR015648), Transcription factor DP, subgroup (InterPro:IPR016556); BEST Arabidopsis thaliana protein match is: DPB; protein binding / protein heterodimerization (TAIR:AT5G03415.1); Has 330 Blast hits to 330 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 199; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT5G02470.3p  transcript_id AT5G02470.3  protein_id AT5G02470.3p  transcript_id AT5G02470.3  
At5g02480	chr5:000548152	0.0	W/548152-549678	AT5G02480.1  CDS  gene_syn T22P11.70, T22P11_70  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: SLT1 (sodium- and lithium-tolerant 1) (TAIR:AT2G37570.1); Has 60 Blast hits to 60 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G02480.1p  transcript_id AT5G02480.1  protein_id AT5G02480.1p  transcript_id AT5G02480.1  
At5g02490	chr5:000552352	0.0	C/552352-552565,550296-552043	AT5G02490.1  CDS  gene_syn T22P11.80, T22P11_80  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ATP binding|GO:0005524||IEA  go_component cytosol|GO:0005829|11402207|TAS  go_process protein folding|GO:0006457|11402207|TAS  go_process response to heat|GO:0009408|11402207|IEP  go_process response to bacterium|GO:0009617|18065690|IEP  product heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2)  note heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to cadmium ion, response to heat, response to bacterium; LOCATED IN: cytosol, cell wall, plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1); ATP binding (TAIR:AT5G02500.1); Has 24929 Blast hits to 24652 proteins in 3112 species: Archae - 103; Bacteria - 9641; Metazoa - 3128; Fungi - 1215; Plants - 726; Viruses - 241; Other Eukaryotes - 9875 (source: NCBI BLink).  protein_id AT5G02490.1p  transcript_id AT5G02490.1  protein_id AT5G02490.1p  transcript_id AT5G02490.1  
At5g02500	chr5:000556121	0.0	C/556121-556334,554055-555796	AT5G02500.1  CDS  gene_syn ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, AT-HSC70-1, HEAT SHOCK COGNATE PROTEIN 70, HEAT SHOCK COGNATE PROTEIN 70-1, HEAT SHOCK PROTEIN 70-1, HSC70, HSC70-1, HSP70-1, T22P11.90, T22P11_90  gene HSC70-1  function encodes a member of heat shock protein 70 family.  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleus|GO:0005634|14617066|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ATP binding|GO:0005524||IEA  go_component cytosol|GO:0005829|11402207|TAS  go_process protein folding|GO:0006457|11402207|TAS  go_process response to heat|GO:0009408|11402207|IEP  go_process response to cold|GO:0009409|14617066|IEP  go_process response to virus|GO:0009615|15805473|IEP  product HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1); ATP binding  note HEAT SHOCK COGNATE PROTEIN 70-1 (HSC70-1); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to cadmium ion, response to virus, response to cold, response to heat; LOCATED IN: in 9 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2) (TAIR:AT5G02490.1); Has 24939 Blast hits to 24683 proteins in 3107 species: Archae - 105; Bacteria - 9668; Metazoa - 3128; Fungi - 1213; Plants - 723; Viruses - 238; Other Eukaryotes - 9864 (source: NCBI BLink).  protein_id AT5G02500.1p  transcript_id AT5G02500.1  protein_id AT5G02500.1p  transcript_id AT5G02500.1  
At5g02500	chr5:000556121	0.0	C/556121-556334,554832-555796,554055-554441	AT5G02500.2  CDS  gene_syn ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, AT-HSC70-1, HEAT SHOCK COGNATE PROTEIN 70, HEAT SHOCK COGNATE PROTEIN 70-1, HEAT SHOCK PROTEIN 70-1, HSC70, HSC70-1, HSP70-1, T22P11.90, T22P11_90  gene HSC70-1  function encodes a member of heat shock protein 70 family.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function ATP binding|GO:0005524||IEA  go_component cytosol|GO:0005829|11402207|TAS  go_process protein folding|GO:0006457|11402207|TAS  go_process response to heat|GO:0009408|11402207|IEP  go_process response to cold|GO:0009409|14617066|IEP  go_process response to virus|GO:0009615|15805473|IEP  product HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1); ATP binding  note HEAT SHOCK COGNATE PROTEIN 70-1 (HSC70-1); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to virus, response to cold, response to heat; LOCATED IN: cytosol, apoplast, chloroplast, plasma membrane, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) (TAIR:AT3G09440.1); Has 30499 Blast hits to 23877 proteins in 2931 species: Archae - 177; Bacteria - 11890; Metazoa - 4695; Fungi - 1711; Plants - 1106; Viruses - 241; Other Eukaryotes - 10679 (source: NCBI BLink).  protein_id AT5G02500.2p  transcript_id AT5G02500.2  protein_id AT5G02500.2p  transcript_id AT5G02500.2  
At5g02502	chr5:000558604	0.0	C/558604-558711	AT5G02502.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12587.1); Has 19 Blast hits to 19 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G02502.1p  transcript_id AT5G02502.1  protein_id AT5G02502.1p  transcript_id AT5G02502.1  
At5g02505	chr5:000559330	0.0	C/559330-559401	AT5G02505.1  tRNA  gene_syn 67576.TRNA-HIS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-His (anticodon: GTG)  transcript_id AT5G02505.1  
At5g02510	chr5:000560135	0.0	W/560135-560407,560491-560667,560771-560860	AT5G02510.1  CDS  gene_syn T22P11.100, T22P11_100  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G32440.1); Has 107 Blast hits to 107 proteins in 23 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT5G02510.1p  transcript_id AT5G02510.1  protein_id AT5G02510.1p  transcript_id AT5G02510.1  
At5g02520	chr5:000561325	0.0	W/561325-561378,561469-561557,561642-561786,561901-562018,562113-563257,563349-563430,563517-563575,563648-563705,563794-563840	AT5G02520.1  CDS  gene_syn T22P11.110, T22P11_110  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: SANT associated (InterPro:IPR015216); BEST Arabidopsis thaliana protein match is: EMB1674 (EMBRYO DEFECTIVE 1674) (TAIR:AT1G58210.1); Has 41 Blast hits to 40 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 2; Plants - 4; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT5G02520.1p  transcript_id AT5G02520.1  protein_id AT5G02520.1p  transcript_id AT5G02520.1  
At5g02530	chr5:000565588	0.0	C/565588-565776,565270-565455,565110-565178,564787-565025,564332-564527	AT5G02530.1  CDS  gene_syn T22P11.120, T22P11_120  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product RNA and export factor-binding protein, putative  note RNA and export factor-binding protein, putative; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA and export factor-binding protein, putative (TAIR:AT5G59950.4); Has 10734 Blast hits to 7876 proteins in 597 species: Archae - 2; Bacteria - 1111; Metazoa - 4776; Fungi - 1622; Plants - 1564; Viruses - 50; Other Eukaryotes - 1609 (source: NCBI BLink).  protein_id AT5G02530.1p  transcript_id AT5G02530.1  protein_id AT5G02530.1p  transcript_id AT5G02530.1  
At5g02540	chr5:000568609	0.0	W/568609-568726,568844-569075,569580-569659,569756-569909,569987-570065,570193-570277,570351-570397,570520-570720	AT5G02540.1  CDS  gene_syn T22P11.130, T22P11_130  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT2G37540.1); Has 38051 Blast hits to 37980 proteins in 1908 species: Archae - 227; Bacteria - 21175; Metazoa - 4246; Fungi - 2183; Plants - 1038; Viruses - 0; Other Eukaryotes - 9182 (source: NCBI BLink).  protein_id AT5G02540.1p  transcript_id AT5G02540.1  protein_id AT5G02540.1p  transcript_id AT5G02540.1  
At5g02550	chr5:000573247	0.0	C/573247-573477	AT5G02550.1  CDS  gene_syn T22P11.140, T22P11_140  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G02550.1p  transcript_id AT5G02550.1  protein_id AT5G02550.1p  transcript_id AT5G02550.1  
At5g02560	chr5:000575437	0.0	W/575437-575649,576208-576456	AT5G02560.1  CDS  gene_syn HTA12, T22P11.150, T22P11_150  gene HTA12  function Encodes HTA12, a histone H2A protein.  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product HTA12; DNA binding  note HTA12; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: HTA6; DNA binding (TAIR:AT5G59870.1); Has 3287 Blast hits to 3287 proteins in 312 species: Archae - 0; Bacteria - 0; Metazoa - 2216; Fungi - 240; Plants - 451; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink).  protein_id AT5G02560.1p  transcript_id AT5G02560.1  protein_id AT5G02560.1p  transcript_id AT5G02560.1  
At5g02570	chr5:000576742	0.0	C/576742-577140	AT5G02570.1  CDS  gene_syn T22P11.160, T22P11_160  go_component nucleolus|GO:0005730|15496452|IDA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product histone H2B, putative  note histone H2B, putative; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleolus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H2B, putative (TAIR:AT3G53650.1); Has 2667 Blast hits to 2667 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 1851; Fungi - 166; Plants - 359; Viruses - 0; Other Eukaryotes - 291 (source: NCBI BLink).  protein_id AT5G02570.1p  transcript_id AT5G02570.1  protein_id AT5G02570.1p  transcript_id AT5G02570.1  
At5g02580	chr5:000579965	0.0	W/579965-580006,580134-580239,580327-580454	AT5G02580.1  CDS  gene_syn T22P11.170, T22P11_170  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55240.1); Has 107 Blast hits to 107 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 106; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G02580.1p  transcript_id AT5G02580.1  protein_id AT5G02580.1p  transcript_id AT5G02580.1  
At5g02580	chr5:000579965	0.0	W/579965-580006,580134-580292	AT5G02580.2  CDS  gene_syn T22P11.170, T22P11_170  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55240.1); Has 44 Blast hits to 44 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G02580.2p  transcript_id AT5G02580.2  protein_id AT5G02580.2p  transcript_id AT5G02580.2  
At5g02590	chr5:000583117	0.0	W/583117-584097	AT5G02590.1  CDS  gene_syn T22P11.180, T22P11_180  go_function binding|GO:0005488||IEA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|ISS  product chloroplast lumen common family protein  note chloroplast lumen common family protein; FUNCTIONS IN: binding; LOCATED IN: chloroplast thylakoid lumen; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: chloroplast lumen common family protein (TAIR:AT3G53560.1); Has 1473 Blast hits to 1231 proteins in 255 species: Archae - 99; Bacteria - 618; Metazoa - 200; Fungi - 8; Plants - 69; Viruses - 0; Other Eukaryotes - 479 (source: NCBI BLink).  protein_id AT5G02590.1p  transcript_id AT5G02590.1  protein_id AT5G02590.1p  transcript_id AT5G02590.1  
At5g02600	chr5:000586106	0.0	C/586106-586855,585944-586019,585713-585846	AT5G02600.1  CDS  gene_syn T22P11.190, T22P11_190  go_component chloroplast|GO:0009507||IEA  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_process metal ion transport|GO:0030001||ISS  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT2G37390.1); Has 1331 Blast hits to 991 proteins in 133 species: Archae - 0; Bacteria - 32; Metazoa - 114; Fungi - 70; Plants - 772; Viruses - 53; Other Eukaryotes - 290 (source: NCBI BLink).  protein_id AT5G02600.1p  transcript_id AT5G02600.1  protein_id AT5G02600.1p  transcript_id AT5G02600.1  
At5g02600	chr5:000586106	0.0	C/586106-586855,585944-586019,585717-585846,584486-584489	AT5G02600.2  CDS  gene_syn T22P11.190, T22P11_190  go_component chloroplast|GO:0009507||IEA  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_process metal ion transport|GO:0030001||ISS  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT2G37390.1); Has 1331 Blast hits to 991 proteins in 133 species: Archae - 0; Bacteria - 32; Metazoa - 114; Fungi - 70; Plants - 772; Viruses - 53; Other Eukaryotes - 290 (source: NCBI BLink).  protein_id AT5G02600.2p  transcript_id AT5G02600.2  protein_id AT5G02600.2p  transcript_id AT5G02600.2  
At5g02610	chr5:000587611	0.0	W/587611-587614,587734-587869,588220-588376,588473-588547	AT5G02610.1  CDS  gene_syn T22P11.200, T22P11_200  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L35 (RPL35D)  note 60S ribosomal protein L35 (RPL35D); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L29 (InterPro:IPR001854), Ribosomal protein L29, conserved site (InterPro:IPR018254); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L35 (RPL35A) (TAIR:AT3G09500.1); Has 840 Blast hits to 840 proteins in 308 species: Archae - 109; Bacteria - 145; Metazoa - 237; Fungi - 93; Plants - 90; Viruses - 0; Other Eukaryotes - 166 (source: NCBI BLink).  protein_id AT5G02610.1p  transcript_id AT5G02610.1  protein_id AT5G02610.1p  transcript_id AT5G02610.1  
At5g02615	chr5:000588893	0.0	C/588893-588966	AT5G02615.1  tRNA  gene_syn 67576.TRNA-ARG-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: TCG)  transcript_id AT5G02615.1  
At5g02620	chr5:000589666	0.0	W/589666-589978,590206-590615,590685-591536	AT5G02620.1  CDS  gene_syn T22P11.210, T22P11_210  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT1G07710.1); Has 60208 Blast hits to 23790 proteins in 813 species: Archae - 48; Bacteria - 4407; Metazoa - 30202; Fungi - 5071; Plants - 2873; Viruses - 718; Other Eukaryotes - 16889 (source: NCBI BLink).  protein_id AT5G02620.1p  transcript_id AT5G02620.1  protein_id AT5G02620.1p  transcript_id AT5G02620.1  
At5g02630	chr5:000591798	0.0	W/591798-593084	AT5G02630.1  CDS  gene_syn T22P11.220, T22P11_220  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  product unknown protein  note LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18520.1); Has 344 Blast hits to 343 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 225; Fungi - 2; Plants - 96; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT5G02630.1p  transcript_id AT5G02630.1  protein_id AT5G02630.1p  transcript_id AT5G02630.1  
At5g02640	chr5:000594334	0.0	C/594334-594819	AT5G02640.1  CDS  gene_syn T22P11.230, T22P11_230  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, root; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46300.1); Has 19 Blast hits to 19 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G02640.1p  transcript_id AT5G02640.1  protein_id AT5G02640.1p  transcript_id AT5G02640.1  
At5g02650	chr5:000598276	0.0	W/598276-598293,598426-598467,598714-598810,598898-598949,599005-599206,599517-599786	AT5G02650.1  CDS  gene_syn T22P11.240, T22P11_240  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28260.2); Has 13 Blast hits to 13 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G02650.1p  transcript_id AT5G02650.1  protein_id AT5G02650.1p  transcript_id AT5G02650.1  
At5g02660	chr5:000600499	0.0	W/600499-602247,602331-602471	AT5G02660.1  CDS  gene_syn T22P11.250, T22P11_250  go_function zinc ion binding|GO:0008270||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Protein of unknown function DUF627 (InterPro:IPR006866), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: ubiquitin carboxyl-terminal hydrolase-related (TAIR:AT1G65200.1); Has 54 Blast hits to 54 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G02660.1p  transcript_id AT5G02660.1  protein_id AT5G02660.1p  transcript_id AT5G02660.1  
At5g02670	chr5:000604337	0.0	C/604337-604606,604120-604246,603753-603982,603413-603583,602971-603291	AT5G02670.1  CDS  gene_syn T22P11.260, T22P11_260  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: polynucleotide adenylyltransferase/ protein binding (TAIR:AT3G06560.1); Has 13 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G02670.1p  transcript_id AT5G02670.1  protein_id AT5G02670.1p  transcript_id AT5G02670.1  
At5g02680	chr5:000605712	0.0	W/605712-605903,606139-606166,606222-606298,606397-606432,606607-606765	AT5G02680.1  CDS  gene_syn F9G14.1  go_component cytoplasm|GO:0005737||IEA  go_process translation|GO:0006412||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function ATP binding|GO:0005524||IEA  product ATP binding / aminoacyl-tRNA ligase/ nucleotide binding  note ATP binding / aminoacyl-tRNA ligase/ nucleotide binding; FUNCTIONS IN: aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I (M) (InterPro:IPR015413); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT1G10310.1); Has 160 Blast hits to 160 proteins in 54 species: Archae - 0; Bacteria - 16; Metazoa - 90; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT5G02680.1p  transcript_id AT5G02680.1  protein_id AT5G02680.1p  transcript_id AT5G02680.1  
At5g02690	chr5:000607299	0.0	W/607299-607421	AT5G02690.1  CDS  gene_syn F9G14.2  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 9 growth stages; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G02690.1p  transcript_id AT5G02690.1  protein_id AT5G02690.1p  transcript_id AT5G02690.1  
At5g02700	chr5:000610768	0.0	C/610768-611679,610482-610637,609381-609683	AT5G02700.1  CDS  gene_syn F9G14.10, F9G14_10  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G28410.1); Has 1454 Blast hits to 1434 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 7; Plants - 1447; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G02700.1p  transcript_id AT5G02700.1  protein_id AT5G02700.1p  transcript_id AT5G02700.1  
At5g02710	chr5:000612628	0.0	W/612628-612894,612987-613065,613153-613240,613384-613480	AT5G02710.1  CDS  gene_syn F9G14.8  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0153 (InterPro:IPR005358); Has 211 Blast hits to 211 proteins in 60 species: Archae - 8; Bacteria - 92; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT5G02710.1p  transcript_id AT5G02710.1  protein_id AT5G02710.1p  transcript_id AT5G02710.1  
At5g02720	chr5:000614121	0.0	C/614121-614313,613782-614005	AT5G02720.1  CDS  gene_syn F9G14.30, F9G14_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53490.1); Has 26 Blast hits to 26 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G02720.1p  transcript_id AT5G02720.1  protein_id AT5G02720.1p  transcript_id AT5G02720.1  
At5g02725	chr5:000614644	0.0	W/614644-614725	AT5G02725.1  tRNA  gene_syn 67576.TRNA-SER-1, 67577.TRNA-SER-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: CGA)  transcript_id AT5G02725.1  
At5g02730	chr5:000615610	0.0	W/615610-616227	AT5G02730.1  CDS  gene_syn F9G14.40, F9G14_40  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_component extracellular region|GO:0005576||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product allergen V5/Tpx-1-related family protein  note allergen V5/Tpx-1-related family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related, conserved site (InterPro:IPR018244), Allergen V5/Tpx-1 related (InterPro:IPR001283), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: pathogenesis-related protein, putative (TAIR:AT3G09590.1); Has 2293 Blast hits to 2203 proteins in 296 species: Archae - 0; Bacteria - 50; Metazoa - 1361; Fungi - 220; Plants - 594; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT5G02730.1p  transcript_id AT5G02730.1  protein_id AT5G02730.1p  transcript_id AT5G02730.1  
At5g02740	chr5:000616517	0.0	W/616517-616694,616990-617131,617246-617330,617444-617491,617617-617717,618135-618267	AT5G02740.1  CDS  gene_syn F9G14.50, F9G14_50  go_function nucleotide binding|GO:0000166||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleotide binding  note nucleotide binding; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); Has 21 Blast hits to 21 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G02740.1p  transcript_id AT5G02740.1  protein_id AT5G02740.1p  transcript_id AT5G02740.1  
At5g02740	chr5:000616517	0.0	W/616517-616694,616990-617131,617246-617330,617444-617491,617617-617721	AT5G02740.2  CDS  gene_syn F9G14.50, F9G14_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 17 Blast hits to 17 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G02740.2p  transcript_id AT5G02740.2  protein_id AT5G02740.2p  transcript_id AT5G02740.2  
At5g02750	chr5:000620101	0.0	W/620101-620952	AT5G02750.1  CDS  gene_syn F9G14.60, F9G14_60  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G60820.1); Has 5913 Blast hits to 5898 proteins in 204 species: Archae - 0; Bacteria - 6; Metazoa - 2271; Fungi - 392; Plants - 2226; Viruses - 15; Other Eukaryotes - 1003 (source: NCBI BLink).  protein_id AT5G02750.1p  transcript_id AT5G02750.1  protein_id AT5G02750.1p  transcript_id AT5G02750.1  
At5g02760	chr5:000625377	0.0	W/625377-625668,625744-626105,626263-626499,626596-626817	AT5G02760.1  CDS  gene_syn F9G14.70, F9G14_70  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C family protein / PP2C family protein  note protein phosphatase 2C family protein / PP2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C family protein / PP2C family protein (TAIR:AT3G12620.2); Has 3788 Blast hits to 3786 proteins in 222 species: Archae - 2; Bacteria - 8; Metazoa - 1298; Fungi - 398; Plants - 1308; Viruses - 2; Other Eukaryotes - 772 (source: NCBI BLink).  protein_id AT5G02760.1p  transcript_id AT5G02760.1  protein_id AT5G02760.1p  transcript_id AT5G02760.1  
At5g02770	chr5:000628843	0.0	C/628843-629168,628633-628719,628403-628540,628232-628295,628101-628130	AT5G02770.1  CDS  gene_syn F9G14.80, F9G14_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 367 Blast hits to 255 proteins in 95 species: Archae - 0; Bacteria - 48; Metazoa - 197; Fungi - 19; Plants - 22; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).  protein_id AT5G02770.1p  transcript_id AT5G02770.1  protein_id AT5G02770.1p  transcript_id AT5G02770.1  
At5g02780	chr5:000630957	0.0	W/630957-630973,631078-631216,631323-631409,631509-631607,631700-631805,631883-631959,632050-632157,632250-632327,632483-632485	AT5G02780.1  CDS  gene_syn F9G14.90, F9G14_90  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product In2-1 protein, putative  note In2-1 protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, male gametophyte, root, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: In2-1 protein, putative (TAIR:AT5G02790.1); Has 3148 Blast hits to 3139 proteins in 533 species: Archae - 8; Bacteria - 840; Metazoa - 693; Fungi - 135; Plants - 1070; Viruses - 0; Other Eukaryotes - 402 (source: NCBI BLink).  protein_id AT5G02780.1p  transcript_id AT5G02780.1  protein_id AT5G02780.1p  transcript_id AT5G02780.1  
At5g02780	chr5:000630957	0.0	W/630957-630973,631078-631216,631323-631409,631509-631607,631700-631805,631889-631959,632050-632157,632250-632327,632483-632485	AT5G02780.2  CDS  gene_syn F9G14.90, F9G14_90  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product In2-1 protein, putative  note In2-1 protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, male gametophyte, root, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: In2-1 protein, putative (TAIR:AT5G02790.1); Has 3057 Blast hits to 3049 proteins in 510 species: Archae - 8; Bacteria - 802; Metazoa - 675; Fungi - 131; Plants - 1060; Viruses - 0; Other Eukaryotes - 381 (source: NCBI BLink).  protein_id AT5G02780.2p  transcript_id AT5G02780.2  protein_id AT5G02780.2p  transcript_id AT5G02780.2  
At5g02790	chr5:000632877	0.0	W/632877-632893,633055-633126,633233-633293,633488-633574,633660-633758,633832-633934,634017-634093,634190-634297,634390-634470,634856-634858	AT5G02790.1  CDS  gene_syn F9G14.100, F9G14_100  go_process response to cadmium ion|GO:0046686|16502469|IEP  product In2-1 protein, putative  note In2-1 protein, putative; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: In2-1 protein, putative (TAIR:AT5G02780.1); Has 2811 Blast hits to 2774 proteins in 481 species: Archae - 2; Bacteria - 698; Metazoa - 592; Fungi - 122; Plants - 984; Viruses - 0; Other Eukaryotes - 413 (source: NCBI BLink).  protein_id AT5G02790.1p  transcript_id AT5G02790.1  protein_id AT5G02790.1p  transcript_id AT5G02790.1  
At5g02800	chr5:000637266	0.0	C/637266-637374,636641-636822,636366-636555,635899-636290,635545-635808	AT5G02800.1  CDS  gene_syn F9G14.110, F9G14_110  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G18610.1); Has 83344 Blast hits to 82187 proteins in 2998 species: Archae - 46; Bacteria - 7479; Metazoa - 36740; Fungi - 6377; Plants - 18583; Viruses - 348; Other Eukaryotes - 13771 (source: NCBI BLink).  protein_id AT5G02800.1p  transcript_id AT5G02800.1  protein_id AT5G02800.1p  transcript_id AT5G02800.1  
At5g02810	chr5:000641152	0.0	C/641152-641461,640889-641050,640622-640755,640286-640450,639819-639993,639273-639720,638506-639175,638283-638402	AT5G02810.1  CDS  gene_syn APRR7, F9G14.120, F9G14_120, PRR7, PSEUDO-RESPONSE REGULATOR 7  gene PRR7  function PRR7 and PRR9 are partially redundant essential components of a temperature-sensitive circadian system. CCA1 and LHY had a positive effect on PRR7 expression levels.  go_component nucleus|GO:0005634|14563930|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process circadian rhythm|GO:0007623|11100772|TAS  go_process circadian rhythm|GO:0007623|15695441|IMP  go_process response to temperature stimulus|GO:0009266|15767265|IGI  go_process red or far red light signaling pathway|GO:0010017|14563930|IMP  go_function two-component response regulator activity|GO:0000156||ISS  go_function transcription regulator activity|GO:0030528|12068096|TAS  product PRR7 (PSEUDO-RESPONSE REGULATOR 7); transcription regulator/ two-component response regulator  note PSEUDO-RESPONSE REGULATOR 7 (PRR7); FUNCTIONS IN: transcription regulator activity, two-component response regulator activity; INVOLVED IN: red or far red light signaling pathway, response to temperature stimulus, circadian rhythm; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver region (InterPro:IPR001789), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: APRR3 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 3); transcription regulator/ two-component response regulator (TAIR:AT5G60100.1); Has 49142 Blast hits to 43086 proteins in 1836 species: Archae - 208; Bacteria - 34642; Metazoa - 2616; Fungi - 1539; Plants - 2504; Viruses - 65; Other Eukaryotes - 7568 (source: NCBI BLink).  protein_id AT5G02810.1p  transcript_id AT5G02810.1  protein_id AT5G02810.1p  transcript_id AT5G02810.1  
At5g02811	chr5:000642071	0.0	W/642071-642220	AT5G02811.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G02811.1p  transcript_id AT5G02811.1  protein_id AT5G02811.1p  transcript_id AT5G02811.1  
At5g02815	chr5:000642400	0.0	C/642400-642481	AT5G02815.1  tRNA  gene_syn 67577.TRNA-SER-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: TGA)  transcript_id AT5G02815.1  
At5g02820	chr5:000642658	0.0	W/642658-643188,643371-644123	AT5G02820.1  CDS  gene_syn BIN5, BRASSINOSTEROID INSENSITIVE 5, F9G14.130, F9G14_130, RHL2, ROOT HAIRLESS 2, SPO11-3  gene RHL2  function Involved in the patterning and shape of leaf trichomes. Encodes the DNA topoisomerase VI SPO11-3, involved in endoreduplication  go_component nucleus|GO:0005634|12401175|IDA  go_process DNA metabolic process|GO:0006259||ISS  go_process DNA topological change|GO:0006265||ISS  go_process epidermal cell fate specification|GO:0009957|9165126|IMP  go_function DNA binding|GO:0003677||ISS  go_function DNA topoisomerase (ATP-hydrolyzing) activity|GO:0003918|12401175|TAS  go_function DNA topoisomerase (ATP-hydrolyzing) activity|GO:0003918||ISS  go_function protein binding|GO:0005515|16339310|IPI  go_function ATP binding|GO:0005524||ISS  go_function identical protein binding|GO:0042802|16339310|IPI  product RHL2 (ROOT HAIRLESS 2); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ identical protein binding / protein binding  note ROOT HAIRLESS 2 (RHL2); FUNCTIONS IN: protein binding, DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, identical protein binding, ATP binding; INVOLVED IN: DNA topological change, epidermal cell fate specification, DNA metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Spo11/DNA topoisomerase VI, subunit A, N-terminal (InterPro:IPR013049), DNA topoisomerase VI, subunit A (InterPro:IPR004085), Spo11/DNA topoisomerase VI, subunit A (InterPro:IPR002815); BEST Arabidopsis thaliana protein match is: ATSPO11-1; ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ catalytic (TAIR:AT3G13170.1); Has 697 Blast hits to 697 proteins in 219 species: Archae - 139; Bacteria - 12; Metazoa - 151; Fungi - 79; Plants - 87; Viruses - 0; Other Eukaryotes - 229 (source: NCBI BLink).  protein_id AT5G02820.1p  transcript_id AT5G02820.1  protein_id AT5G02820.1p  transcript_id AT5G02820.1  
At5g02830	chr5:000647842	0.0	C/647842-648421,647679-647766,647358-647562,647145-647252,646870-647034,646188-646781,645928-645993,645750-645830,645423-645520,645102-645312,644939-644999,644458-644759	AT5G02830.1  CDS  gene_syn F9G14.140, F9G14_140  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G18940.1); Has 14432 Blast hits to 5047 proteins in 162 species: Archae - 3; Bacteria - 24; Metazoa - 323; Fungi - 205; Plants - 13092; Viruses - 0; Other Eukaryotes - 785 (source: NCBI BLink).  protein_id AT5G02830.1p  transcript_id AT5G02830.1  protein_id AT5G02830.1p  transcript_id AT5G02830.1  
At5g02840	chr5:000648794	0.0	W/648794-648987,649604-649661,649755-649878,649962-650120,650230-650355,650434-650543,650861-650920,651162-651212	AT5G02840.1  CDS  gene_syn F9G14.150, F9G14_150, LCL1, LHY/CCA1-like 1  gene LCL1  function CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.  go_component nucleus|GO:0005634|19218364|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process circadian rhythm|GO:0007623|19218364|IMP  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product LCL1 (LHY/CCA1-like 1); DNA binding / transcription factor  note LHY/CCA1-like 1 (LCL1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 10 processes; LOCATED IN: nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT3G09600.2); Has 795 Blast hits to 791 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 72; Fungi - 0; Plants - 641; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT5G02840.1p  transcript_id AT5G02840.1  protein_id AT5G02840.1p  transcript_id AT5G02840.1  
At5g02840	chr5:000648794	0.0	W/648794-648987,649604-649661,649755-649878,649962-650120,650230-650355,650434-650543,650861-650920,651162-651212	AT5G02840.2  CDS  gene_syn F9G14.150, F9G14_150, LCL1, LHY/CCA1-like 1  gene LCL1  function CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.  go_component nucleus|GO:0005634|19218364|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process circadian rhythm|GO:0007623|19218364|IMP  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product LCL1 (LHY/CCA1-like 1); DNA binding / transcription factor  note LHY/CCA1-like 1 (LCL1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 10 processes; LOCATED IN: nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT3G09600.2); Has 795 Blast hits to 791 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 72; Fungi - 0; Plants - 641; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT5G02840.2p  transcript_id AT5G02840.2  protein_id AT5G02840.2p  transcript_id AT5G02840.2  
At5g02840	chr5:000648794	0.0	W/648794-648987,649604-649661,649755-649878,649962-650120,650230-650355,650434-650543,650861-650920,651184-651204	AT5G02840.3  CDS  gene_syn F9G14.150, F9G14_150, LCL1, LHY/CCA1-like 1  gene LCL1  function CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.  go_component nucleus|GO:0005634|19218364|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process circadian rhythm|GO:0007623|19218364|IMP  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product LCL1 (LHY/CCA1-like 1); DNA binding / transcription factor  note LHY/CCA1-like 1 (LCL1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 10 processes; LOCATED IN: nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT3G09600.1); Has 796 Blast hits to 792 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 72; Fungi - 0; Plants - 642; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT5G02840.3p  transcript_id AT5G02840.3  protein_id AT5G02840.3p  transcript_id AT5G02840.3  
At5g02850	chr5:000652159	0.0	W/652159-653439	AT5G02850.1  CDS  gene_syn F9G14.160, F9G14_160  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 224 Blast hits to 209 proteins in 56 species: Archae - 0; Bacteria - 21; Metazoa - 97; Fungi - 29; Plants - 29; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT5G02850.1p  transcript_id AT5G02850.1  protein_id AT5G02850.1p  transcript_id AT5G02850.1  
At5g02860	chr5:000654102	0.0	W/654102-656561	AT5G02860.1  CDS  gene_syn F9G14.170, F9G14_170  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G18940.1); Has 32008 Blast hits to 6661 proteins in 215 species: Archae - 4; Bacteria - 67; Metazoa - 1584; Fungi - 953; Plants - 27354; Viruses - 0; Other Eukaryotes - 2046 (source: NCBI BLink).  protein_id AT5G02860.1p  transcript_id AT5G02860.1  protein_id AT5G02860.1p  transcript_id AT5G02860.1  
At5g02870	chr5:000657830	0.0	W/657830-658939,659413-659526	AT5G02870.1  CDS  gene_syn F9G14.180, F9G14_180  go_component nucleolus|GO:0005730|15496452|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L4/L1 (RPL4D)  note 60S ribosomal protein L4/L1 (RPL4D); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4/L1e (InterPro:IPR002136), Ribosomal protein L4/L1e, eukaryotic/archaeal, conserved site (InterPro:IPR013000); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L4/L1 (RPL4A) (TAIR:AT3G09630.1); Has 859 Blast hits to 858 proteins in 292 species: Archae - 213; Bacteria - 8; Metazoa - 235; Fungi - 103; Plants - 78; Viruses - 0; Other Eukaryotes - 222 (source: NCBI BLink).  protein_id AT5G02870.1p  transcript_id AT5G02870.1  protein_id AT5G02870.1p  transcript_id AT5G02870.1  
At5g02870	chr5:000657830	0.0	W/657830-658939,659416-659526	AT5G02870.2  CDS  gene_syn F9G14.180, F9G14_180  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L4/L1 (RPL4D)  note 60S ribosomal protein L4/L1 (RPL4D); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, plasma membrane, large ribosomal subunit, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4/L1e (InterPro:IPR002136), Ribosomal protein L4/L1e, eukaryotic/archaeal, conserved site (InterPro:IPR013000); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L4/L1 (RPL4A) (TAIR:AT3G09630.2); Has 861 Blast hits to 860 proteins in 293 species: Archae - 215; Bacteria - 8; Metazoa - 235; Fungi - 103; Plants - 78; Viruses - 0; Other Eukaryotes - 222 (source: NCBI BLink).  protein_id AT5G02870.2p  transcript_id AT5G02870.2  protein_id AT5G02870.2p  transcript_id AT5G02870.2  
At5g02880	chr5:000662643	0.0	W/662643-663290,663378-663488,663614-663730,663824-663982,664067-664228,664381-664530,664624-664745,664829-665921,666255-667436,667524-667754,667842-667946,668026-668106,668178-668246,668345-668473,668566-668649,668782-668847	AT5G02880.1  CDS  gene_syn F9G14.190, F9G14_190, UPL4  gene UPL4  function encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.  go_component ubiquitin ligase complex|GO:0000151|12969426|ISS  go_process protein ubiquitination|GO:0016567|12969426|ISS  go_function ubiquitin-protein ligase activity|GO:0004842|12969426|ISS  product UPL4; ubiquitin-protein ligase  note UPL4; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), HECT (InterPro:IPR000569); BEST Arabidopsis thaliana protein match is: KAK (KAKTUS); ubiquitin-protein ligase (TAIR:AT4G38600.1); Has 4370 Blast hits to 3871 proteins in 195 species: Archae - 0; Bacteria - 7; Metazoa - 2774; Fungi - 647; Plants - 264; Viruses - 0; Other Eukaryotes - 678 (source: NCBI BLink).  protein_id AT5G02880.1p  transcript_id AT5G02880.1  protein_id AT5G02880.1p  transcript_id AT5G02880.1  
At5g02890	chr5:000670987	0.0	C/670987-671454,670207-670800	AT5G02890.1  CDS  gene_syn F9G14.200, F9G14_200  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT4G29250.1); Has 232 Blast hits to 232 proteins in 39 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 2; Plants - 228; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G02890.1p  transcript_id AT5G02890.1  protein_id AT5G02890.1p  transcript_id AT5G02890.1  
At5g02900	chr5:000674060	0.0	W/674060-674456,674524-675569	AT5G02900.1  CDS  gene_syn CYP96A13, F9G14.210, F9G14_210  gene CYP96A13  function member of CYP96A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process biological_process|GO:0008150||ND  go_function oxygen binding|GO:0019825||ISS  product CYP96A13; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP96A13; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP96A12; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G39510.1); Has 20335 Blast hits to 20292 proteins in 1058 species: Archae - 19; Bacteria - 1391; Metazoa - 9462; Fungi - 3931; Plants - 4703; Viruses - 3; Other Eukaryotes - 826 (source: NCBI BLink).  protein_id AT5G02900.1p  transcript_id AT5G02900.1  protein_id AT5G02900.1p  transcript_id AT5G02900.1  
At5g02910	chr5:000677120	0.0	W/677120-677986,678233-678406,678572-678907	AT5G02910.1  CDS  gene_syn F9G14.220, F9G14_220  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G28410.1); Has 1469 Blast hits to 1444 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1465; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G02910.1p  transcript_id AT5G02910.1  protein_id AT5G02910.1p  transcript_id AT5G02910.1  
At5g02920	chr5:000680541	0.0	W/680541-681317	AT5G02920.1  CDS  gene_syn F9G14.230, F9G14_230  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product ubiquitin-protein ligase  note ubiquitin-protein ligase; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G02930.1); Has 1291 Blast hits to 1277 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 24; Fungi - 7; Plants - 1258; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G02920.1p  transcript_id AT5G02920.1  protein_id AT5G02920.1p  transcript_id AT5G02920.1  
At5g02930	chr5:000682577	0.0	W/682577-683521,683817-683993,684193-684480	AT5G02930.1  CDS  gene_syn F9G14.240, F9G14_240  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G02910.1); Has 1431 Blast hits to 1406 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 1416; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G02930.1p  transcript_id AT5G02930.1  protein_id AT5G02930.1p  transcript_id AT5G02930.1  
At5g02940	chr5:000689589	0.0	C/689589-689674,688895-688950,688687-688772,688349-688599,688168-688239,688013-688085,687806-687904,687582-687736,687391-687495,687194-687280,686981-687065,686748-686895,686588-686664,686260-686502,686053-686166,685883-685975,685675-685804,685515-685591,685372-685419,685219-685288,685061-685134,684842-684952,684671-684772	AT5G02940.1  CDS  gene_syn F9G14.250, F9G14_250  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  product unknown protein  note LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1012 (InterPro:IPR010420); BEST Arabidopsis thaliana protein match is: phosphotransferase-related (TAIR:AT5G43745.1); Has 255 Blast hits to 252 proteins in 33 species: Archae - 0; Bacteria - 23; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT5G02940.1p  transcript_id AT5G02940.1  protein_id AT5G02940.1p  transcript_id AT5G02940.1  
At5g02950	chr5:000690953	0.0	W/690953-692851	AT5G02950.1  CDS  gene_syn F9G14.260, F9G14_260  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product PWWP domain-containing protein  note PWWP domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: PWWP domain-containing protein (TAIR:AT3G09670.2); Has 1545 Blast hits to 1290 proteins in 176 species: Archae - 0; Bacteria - 56; Metazoa - 600; Fungi - 125; Plants - 157; Viruses - 11; Other Eukaryotes - 596 (source: NCBI BLink).  protein_id AT5G02950.1p  transcript_id AT5G02950.1  protein_id AT5G02950.1p  transcript_id AT5G02950.1  
At5g02960	chr5:000694392	0.0	C/694392-694396,693734-693889,693509-693635,693280-693420	AT5G02960.1  CDS  gene_syn F9G14.270, F9G14_270  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S23 (RPS23B)  note 40S ribosomal protein S23 (RPS23B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome; EXPRESSED IN: guard cell, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein S23, eukaryotic/archaeal (InterPro:IPR005680), Ribosomal protein S12/S23 (InterPro:IPR006032), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S23 (RPS23A) (TAIR:AT3G09680.1); Has 6124 Blast hits to 6121 proteins in 1817 species: Archae - 180; Bacteria - 2807; Metazoa - 329; Fungi - 198; Plants - 755; Viruses - 0; Other Eukaryotes - 1855 (source: NCBI BLink).  protein_id AT5G02960.1p  transcript_id AT5G02960.1  protein_id AT5G02960.1p  transcript_id AT5G02960.1  
At5g02970	chr5:000695391	0.0	W/695391-695796,695931-696122,696209-696448,696531-696748,696846-697100,697179-697412	AT5G02970.1  CDS  gene_syn F9G14.280, F9G14_280  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT3G09690.2); Has 537 Blast hits to 531 proteins in 131 species: Archae - 2; Bacteria - 272; Metazoa - 8; Fungi - 13; Plants - 197; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT5G02970.1p  transcript_id AT5G02970.1  protein_id AT5G02970.1p  transcript_id AT5G02970.1  
At5g02980	chr5:000697993	0.0	W/697993-699000	AT5G02980.1  CDS  gene_syn F15A17.10, F15A17_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT5G03000.1); Has 915 Blast hits to 873 proteins in 84 species: Archae - 6; Bacteria - 50; Metazoa - 203; Fungi - 26; Plants - 619; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT5G02980.1p  transcript_id AT5G02980.1  protein_id AT5G02980.1p  transcript_id AT5G02980.1  
At5g02990	chr5:000700169	0.0	W/700169-700601,700681-700951,701688-702630	AT5G02990.1  CDS  gene_syn F15A17.20, F15A17_20  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Kelch repeat type 1 (InterPro:IPR006652), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT3G46050.1); Has 4044 Blast hits to 2591 proteins in 140 species: Archae - 8; Bacteria - 93; Metazoa - 2801; Fungi - 14; Plants - 969; Viruses - 47; Other Eukaryotes - 112 (source: NCBI BLink).  protein_id AT5G02990.1p  transcript_id AT5G02990.1  protein_id AT5G02990.1p  transcript_id AT5G02990.1  
At5g03000	chr5:000703268	0.0	W/703268-704134,704240-704437	AT5G03000.1  CDS  gene_syn F15A17.30, F15A17_30  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT3G46050.1); Has 1673 Blast hits to 1519 proteins in 100 species: Archae - 6; Bacteria - 66; Metazoa - 922; Fungi - 1; Plants - 628; Viruses - 13; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT5G03000.1p  transcript_id AT5G03000.1  protein_id AT5G03000.1p  transcript_id AT5G03000.1  
At5g03010	chr5:000704684	0.0	W/704684-705382	AT5G03010.1  CDS  gene_syn F15A17.40, F15A17_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing protein  note kelch repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT5G03020.1); Has 316 Blast hits to 308 proteins in 21 species: Archae - 0; Bacteria - 8; Metazoa - 34; Fungi - 0; Plants - 273; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G03010.1p  transcript_id AT5G03010.1  protein_id AT5G03010.1p  transcript_id AT5G03010.1  
At5g03020	chr5:000707263	0.0	W/707263-708306	AT5G03020.1  CDS  gene_syn F15A17.50, F15A17_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, sperm cell, leaf; EXPRESSED DURING: LP.06 six leaves visible; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT5G02990.1); Has 4926 Blast hits to 3036 proteins in 204 species: Archae - 8; Bacteria - 170; Metazoa - 3686; Fungi - 57; Plants - 699; Viruses - 140; Other Eukaryotes - 166 (source: NCBI BLink).  protein_id AT5G03020.1p  transcript_id AT5G03020.1  protein_id AT5G03020.1p  transcript_id AT5G03020.1  
At5g03030	chr5:000709511	0.0	C/709511-709513,708937-709115,708479-708635	AT5G03030.1  CDS  gene_syn F15A17.60, F15A17_60  go_function heat shock protein binding|GO:0031072||IEA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G35795.1); Has 692 Blast hits to 692 proteins in 215 species: Archae - 0; Bacteria - 135; Metazoa - 169; Fungi - 136; Plants - 46; Viruses - 2; Other Eukaryotes - 204 (source: NCBI BLink).  protein_id AT5G03030.1p  transcript_id AT5G03030.1  protein_id AT5G03030.1p  transcript_id AT5G03030.1  
At5g03040	chr5:000712347	0.0	C/712347-712406,711943-712269,711569-711790,711164-711283,710380-711036	AT5G03040.1  CDS  gene_syn F15A17.70, F15A17_70, IQ-domain 2, iqd2  gene iqd2  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product iqd2 (IQ-domain 2); calmodulin binding  note IQ-domain 2 (iqd2); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQD1 (IQ-DOMAIN 1); calmodulin binding (TAIR:AT3G09710.1); Has 651 Blast hits to 595 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 25; Plants - 437; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT5G03040.1p  transcript_id AT5G03040.1  protein_id AT5G03040.1p  transcript_id AT5G03040.1  
At5g03040	chr5:000712347	0.0	C/712347-712406,711943-712269,711569-711790,711164-711283,710380-711036	AT5G03040.2  CDS  gene_syn F15A17.70, F15A17_70, IQ-domain 2, iqd2  gene iqd2  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product iqd2 (IQ-domain 2); calmodulin binding  note IQ-domain 2 (iqd2); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQD1 (IQ-DOMAIN 1); calmodulin binding (TAIR:AT3G09710.1).  protein_id AT5G03040.2p  transcript_id AT5G03040.2  protein_id AT5G03040.2p  transcript_id AT5G03040.2  
At5g03050	chr5:000715921	0.0	C/715921-715983,715683-715832,715533-715606,715302-715437	AT5G03050.1  CDS  gene_syn F15A17.80, F15A17_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 18 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G03050.1p  transcript_id AT5G03050.1  protein_id AT5G03050.1p  transcript_id AT5G03050.1  
At5g03060	chr5:000717042	0.0	C/717042-717678,716722-716963	AT5G03060.1  CDS  gene_syn F15A17.90, F15A17_90  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11100.2); Has 11791 Blast hits to 8574 proteins in 647 species: Archae - 186; Bacteria - 1501; Metazoa - 4125; Fungi - 663; Plants - 234; Viruses - 105; Other Eukaryotes - 4977 (source: NCBI BLink).  protein_id AT5G03060.1p  transcript_id AT5G03060.1  protein_id AT5G03060.1p  transcript_id AT5G03060.1  
At5g03070	chr5:000721344	0.0	C/721344-721395,720876-721098,720615-720768,720343-720445,720073-720257,719905-719984,719586-719736,719287-719368,719142-719200,718759-719064,718468-718632	AT5G03070.1  CDS  gene_syn F15A17.100, F15A17_100, IMPA-9, IMPORTIN ALPHA ISOFORM 9  gene IMPA-9  function Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.  go_component chloroplast|GO:0009507||IEA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product IMPA-9 (IMPORTIN ALPHA ISOFORM 9); binding  note IMPORTIN ALPHA ISOFORM 9 (IMPA-9); FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: IMPA-6 (IMPORTIN ALPHA ISOFORM 6); binding / protein transporter (TAIR:AT1G02690.2); Has 1543 Blast hits to 1363 proteins in 193 species: Archae - 0; Bacteria - 2; Metazoa - 877; Fungi - 194; Plants - 242; Viruses - 0; Other Eukaryotes - 228 (source: NCBI BLink).  protein_id AT5G03070.1p  transcript_id AT5G03070.1  protein_id AT5G03070.1p  transcript_id AT5G03070.1  
At5g03080	chr5:000721976	0.0	W/721976-722656	AT5G03080.1  CDS  gene_syn F15A17.110, F15A17_110  go_component membrane|GO:0016020||IEA  go_function catalytic activity|GO:0003824||IEA  go_process biological_process|GO:0008150||ND  product phosphatidic acid phosphatase-related / PAP2-related  note phosphatidic acid phosphatase-related / PAP2-related; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); Has 539 Blast hits to 533 proteins in 226 species: Archae - 7; Bacteria - 211; Metazoa - 103; Fungi - 102; Plants - 38; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT5G03080.1p  transcript_id AT5G03080.1  protein_id AT5G03080.1p  transcript_id AT5G03080.1  
At5g03090	chr5:000725281	0.0	W/725281-725299,725688-725962	AT5G03090.1  CDS  gene_syn F15A17.120, F15A17_120  go_component cellular_component|GO:0005575||ND  go_process response to jasmonic acid stimulus|GO:0009753|18425591|IEP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to jasmonic acid stimulus; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53480.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G03090.1p  transcript_id AT5G03090.1  protein_id AT5G03090.1p  transcript_id AT5G03090.1  
At5g03100	chr5:000726832	0.0	W/726832-727686,727912-727980	AT5G03100.1  CDS  gene_syn F15A17.130, F15A17_130  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G02910.1); Has 1340 Blast hits to 1322 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 1333; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G03100.1p  transcript_id AT5G03100.1  protein_id AT5G03100.1p  transcript_id AT5G03100.1  
At5g03110	chr5:000730346	0.0	W/730346-731197	AT5G03110.1  CDS  gene_syn F15A17.140, F15A17_140  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: protamine P1 family protein (TAIR:AT2G37100.1); Has 43 Blast hits to 42 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G03110.1p  transcript_id AT5G03110.1  protein_id AT5G03110.1p  transcript_id AT5G03110.1  
At5g03120	chr5:000734062	0.0	W/734062-734131,734224-734379,734679-734683	AT5G03120.1  CDS  gene_syn F15A17.150, F15A17_150  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G03120.1p  transcript_id AT5G03120.1  protein_id AT5G03120.1p  transcript_id AT5G03120.1  
At5g03130	chr5:000736150	0.0	W/736150-736251,736417-736560	AT5G03130.1  CDS  gene_syn F15A17.160, F15A17_160  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G03130.1p  transcript_id AT5G03130.1  protein_id AT5G03130.1p  transcript_id AT5G03130.1  
At5g03140	chr5:000737750	0.0	C/737750-739885	AT5G03140.1  CDS  gene_syn F15A17.170, F15A17_170  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product lectin protein kinase family protein  note lectin protein kinase family protein; FUNCTIONS IN: carbohydrate binding, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin protein kinase family protein (TAIR:AT3G53380.1); Has 86443 Blast hits to 85431 proteins in 3024 species: Archae - 50; Bacteria - 7703; Metazoa - 37587; Fungi - 6804; Plants - 19480; Viruses - 384; Other Eukaryotes - 14435 (source: NCBI BLink).  protein_id AT5G03140.1p  transcript_id AT5G03140.1  protein_id AT5G03140.1p  transcript_id AT5G03140.1  
At5g03150	chr5:000745849	0.0	W/745849-746035,746410-746809,747642-747898,748011-748678	AT5G03150.1  CDS  gene_syn F15A17.180, F15A17_180, JACKDAW, JKD  gene JKD  function JKD is a nuclear-localized putative transcription factor with three zinc finger domains. jkd mutants show a number of root patterning defects including ectopic periclinal divisions in the cortex, increased cell numbers in the cortical and epidermal layers, a disrupted QC marker expression pattern, and disorganized QC and columella cells. jkd mutants also have a reduced number of meristematic cells in their roots. JKD can interact with the SCR and SHR proteins implicated in root patterning, as well as another zinc finger transcription factor, MAGPIE. All of these interactions require the first zinc finger in JKD according to a Y2H assay. There are also transcriptional interactions among these proteins. The initiation of JKD transcription does not appear to depend on SCR and SHR, but later expression in the post-embryonic QC cells and ground tissue initials is reduced in scr and shr mutants. JKD also appears to be required for SCR transcription beginning in the embryo. There is also some evidence that JKD plays a role in promoting the movement of SHR into the nucleus, particularly in QC cells, but this may be indirect.  go_component intracellular|GO:0005622||IEA  go_process regulation of meristem growth|GO:0010075|17785527|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process root development|GO:0048364|17785527|IMP  go_process regulation of cell division|GO:0051302|17785527|IMP  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein binding|GO:0005515|17785527|IPI  go_function zinc ion binding|GO:0008270||ISS  go_function protein homodimerization activity|GO:0042803|17785527|IPI  product JKD (JACKDAW); nucleic acid binding / protein binding / protein homodimerization/ transcription factor/ zinc ion binding  note JACKDAW (JKD); FUNCTIONS IN: protein binding, transcription factor activity, protein homodimerization activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of meristem growth, regulation of cell division, root development, regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: AtIDD7 (Arabidopsis thaliana Indeterminate(ID)-Domain 7); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT1G55110.1); Has 48701 Blast hits to 17572 proteins in 272 species: Archae - 0; Bacteria - 62; Metazoa - 42452; Fungi - 495; Plants - 412; Viruses - 4; Other Eukaryotes - 5276 (source: NCBI BLink).  protein_id AT5G03150.1p  transcript_id AT5G03150.1  protein_id AT5G03150.1p  transcript_id AT5G03150.1  
At5g03160	chr5:000750286	0.0	W/750286-750415,750742-750907,751007-751208,751296-751456,751541-751634,751721-751933,752010-752087,752174-752392,752486-752671	AT5G03160.1  CDS  gene_syn ARABIDOPSIS HOMOLOG OF MAMALLIAN P58IPK, ATP58IPK, F15A17.190, F15A17_190  gene ATP58IPK  function J domain protein localized in ER lumen. Can partially compensate for the growth defect in jem1 scj1 mutant yeast.  go_component plasma membrane|GO:0005886|17317660|IDA  go_function binding|GO:0005488||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum lumen|GO:0005788|18718935|IDA  go_process protein folding|GO:0006457||ISS  product ATP58IPK (ARABIDOPSIS HOMOLOG OF MAMALLIAN P58IPK); binding / heat shock protein binding  note ARABIDOPSIS HOMOLOG OF MAMALLIAN P58IPK (ATP58IPK); FUNCTIONS IN: heat shock protein binding, binding; INVOLVED IN: protein folding; LOCATED IN: endoplasmic reticulum, plasma membrane, endoplasmic reticulum lumen; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide TPR2 (InterPro:IPR013105), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Tetratricopeptide region (InterPro:IPR013026), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock protein, putative (TAIR:AT5G01390.4); Has 23274 Blast hits to 21770 proteins in 2049 species: Archae - 450; Bacteria - 7829; Metazoa - 4652; Fungi - 1704; Plants - 2004; Viruses - 13; Other Eukaryotes - 6622 (source: NCBI BLink).  protein_id AT5G03160.1p  transcript_id AT5G03160.1  protein_id AT5G03160.1p  transcript_id AT5G03160.1  
At5g03170	chr5:000752898	0.0	C/752898-753638	AT5G03170.1  CDS  gene_syn F15A17.200, F15A17_200, FLA11  gene FLA11  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  product FLA11  note FLA11; LOCATED IN: anchored to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FLA12 (TAIR:AT5G60490.1); Has 653 Blast hits to 643 proteins in 116 species: Archae - 10; Bacteria - 167; Metazoa - 17; Fungi - 10; Plants - 410; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT5G03170.1p  transcript_id AT5G03170.1  protein_id AT5G03170.1p  transcript_id AT5G03170.1  
At5g03180	chr5:000756334	0.0	C/756334-756411,755489-755944,755174-755330,754626-755081,754451-754542,754201-754350	AT5G03180.1  CDS  gene_syn F15A17.210, F15A17_210  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G09760.1); Has 661 Blast hits to 661 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 261; Fungi - 40; Plants - 298; Viruses - 14; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT5G03180.1p  transcript_id AT5G03180.1  protein_id AT5G03180.1p  transcript_id AT5G03180.1  
At5g03190	chr5:000758539	0.0	W/758539-758660,758843-760148	AT5G03190.2  CDS  gene_syn CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 47, CPUORF47, F15A17.220, F15A17_220  gene CPUORF47  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product CPUORF47 (CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 47)  note CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 47 (CPUORF47); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53400.1); Has 112 Blast hits to 111 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 106; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G03190.2p  transcript_id AT5G03190.2  protein_id AT5G03190.2p  transcript_id AT5G03190.2  
At5g03190	chr5:000758539	0.0	W/758539-758676	AT5G03190.3  CDS  gene_syn CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 47, CPUORF47, F15A17.220, F15A17_220  gene CPUORF47  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product CPUORF47 (CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 47)  note CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 47 (CPUORF47); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: CPuORF46 (Conserved peptide upstream open reading frame 46) (TAIR:AT3G53402.1); Has 4 Blast hits to 4 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G03190.3p  transcript_id AT5G03190.3  protein_id AT5G03190.3p  transcript_id AT5G03190.3  
At5g03190	chr5:000758793	0.0	W/758793-760148	AT5G03190.1  CDS  gene_syn CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 47, CPUORF47, F15A17.220, F15A17_220  gene CPUORF47  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product CPUORF47 (CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 47)  note CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 47 (CPUORF47); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53400.1); Has 108 Blast hits to 108 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 102; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G03190.1p  transcript_id AT5G03190.1  protein_id AT5G03190.1p  transcript_id AT5G03190.1  
At5g03200	chr5:000761225	0.0	C/761225-761667,760642-761107,760450-760554	AT5G03200.1  CDS  gene_syn F15A17.230, F15A17_230  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G09770.1); Has 1703 Blast hits to 1703 proteins in 174 species: Archae - 0; Bacteria - 0; Metazoa - 896; Fungi - 70; Plants - 275; Viruses - 82; Other Eukaryotes - 380 (source: NCBI BLink).  protein_id AT5G03200.1p  transcript_id AT5G03200.1  protein_id AT5G03200.1p  transcript_id AT5G03200.1  
At5g03204	chr5:000762287	0.0	C/762287-762397	AT5G03204.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G03204.1p  transcript_id AT5G03204.1  protein_id AT5G03204.1p  transcript_id AT5G03204.1  
At5g03210	chr5:000763070	0.0	C/763070-763258	AT5G03210.1  CDS  gene_syn F15A17.240, F15A17_240  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G03210.1p  transcript_id AT5G03210.1  protein_id AT5G03210.1p  transcript_id AT5G03210.1  
At5g03220	chr5:000768450	0.0	C/768450-768584,768299-768368,767968-768134,767807-767880,767617-767677	AT5G03220.1  CDS  go_component nucleus|GO:0005634||IEA  go_process positive regulation of transcription|GO:0045941||IEA  go_function transcription coactivator activity|GO:0003713||IEA  product transcriptional co-activator-related  note transcriptional co-activator-related; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: positive regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: MED7 (InterPro:IPR009244); BEST Arabidopsis thaliana protein match is: transcription coactivator (TAIR:AT5G03500.2); Has 302 Blast hits to 300 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 127; Fungi - 111; Plants - 29; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT5G03220.1p  transcript_id AT5G03220.1  protein_id AT5G03220.1p  transcript_id AT5G03220.1  
At5g03230	chr5:000769636	0.0	W/769636-770136	AT5G03230.1  CDS  gene_syn F15A17.260, F15A17_260  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF584 (InterPro:IPR007608); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G60680.1); Has 199 Blast hits to 199 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 195; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G03230.1p  transcript_id AT5G03230.1  protein_id AT5G03230.1p  transcript_id AT5G03230.1  
At5g03240	chr5:000771976	0.0	C/771976-772896	AT5G03240.1  CDS  gene_syn F15A17.270, F15A17_270, POLYUBIQUITIN 3, POLYUBIQUITIN 3 PROTEIN, UBQ3  gene UBQ3  function encodes ubiquitin that is attached to proteins destined for degradation. UBQ3 is most homologous with UBQ4, and is expressed in higher levels in vegetative tissue but lower levels in flowers than UBQ4. UBQ3 encodes different number of ubiquitins in different ecotypes. UBQ3 transcript level is modulated by UV-B and light/dark treatments.  go_component vacuole|GO:0005773|15539469|IDA  go_component intracellular|GO:0005622||TAS  go_process protein modification process|GO:0006464||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|7713442|ISS  go_process response to light stimulus|GO:0009416|9193073|IEP  go_process response to UV-B|GO:0010224|12665302|IEP  go_function protein binding|GO:0005515||ISS  go_function protein binding|GO:0005515||TAS  product UBQ3 (POLYUBIQUITIN 3); protein binding  note POLYUBIQUITIN 3 (UBQ3); FUNCTIONS IN: protein binding; INVOLVED IN: response to UV-B, protein modification process, response to light stimulus, ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: UBQ4; protein binding (TAIR:AT5G20620.1); Has 20481 Blast hits to 5455 proteins in 614 species: Archae - 0; Bacteria - 32; Metazoa - 10178; Fungi - 1983; Plants - 3508; Viruses - 603; Other Eukaryotes - 4177 (source: NCBI BLink).  protein_id AT5G03240.1p  transcript_id AT5G03240.1  protein_id AT5G03240.1p  transcript_id AT5G03240.1  
At5g03240	chr5:000771976	0.0	C/771976-772896	AT5G03240.2  CDS  gene_syn F15A17.270, F15A17_270, POLYUBIQUITIN 3, POLYUBIQUITIN 3 PROTEIN, UBQ3  gene UBQ3  function encodes ubiquitin that is attached to proteins destined for degradation. UBQ3 is most homologous with UBQ4, and is expressed in higher levels in vegetative tissue but lower levels in flowers than UBQ4. UBQ3 encodes different number of ubiquitins in different ecotypes. UBQ3 transcript level is modulated by UV-B and light/dark treatments.  go_component vacuole|GO:0005773|15539469|IDA  go_component intracellular|GO:0005622||TAS  go_process protein modification process|GO:0006464||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|7713442|ISS  go_process response to light stimulus|GO:0009416|9193073|IEP  go_process response to UV-B|GO:0010224|12665302|IEP  go_function protein binding|GO:0005515||ISS  go_function protein binding|GO:0005515||TAS  product UBQ3 (POLYUBIQUITIN 3); protein binding  note POLYUBIQUITIN 3 (UBQ3); FUNCTIONS IN: protein binding; INVOLVED IN: response to UV-B, protein modification process, response to light stimulus, ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: UBQ4; protein binding (TAIR:AT5G20620.1); Has 20481 Blast hits to 5455 proteins in 614 species: Archae - 0; Bacteria - 32; Metazoa - 10178; Fungi - 1983; Plants - 3508; Viruses - 603; Other Eukaryotes - 4177 (source: NCBI BLink).  protein_id AT5G03240.2p  transcript_id AT5G03240.2  protein_id AT5G03240.2p  transcript_id AT5G03240.2  
At5g03240	chr5:000771976	0.0	C/771976-772896	AT5G03240.3  CDS  gene_syn F15A17.270, F15A17_270, POLYUBIQUITIN 3, POLYUBIQUITIN 3 PROTEIN, UBQ3  gene UBQ3  function encodes ubiquitin that is attached to proteins destined for degradation. UBQ3 is most homologous with UBQ4, and is expressed in higher levels in vegetative tissue but lower levels in flowers than UBQ4. UBQ3 encodes different number of ubiquitins in different ecotypes. UBQ3 transcript level is modulated by UV-B and light/dark treatments.  go_component vacuole|GO:0005773|15539469|IDA  go_component intracellular|GO:0005622||TAS  go_process protein modification process|GO:0006464||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|7713442|ISS  go_process response to light stimulus|GO:0009416|9193073|IEP  go_process response to UV-B|GO:0010224|12665302|IEP  go_function protein binding|GO:0005515||ISS  go_function protein binding|GO:0005515||TAS  product UBQ3 (POLYUBIQUITIN 3); protein binding  note POLYUBIQUITIN 3 (UBQ3); FUNCTIONS IN: protein binding; INVOLVED IN: response to UV-B, protein modification process, response to light stimulus, ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: UBQ4; protein binding (TAIR:AT5G20620.1); Has 20481 Blast hits to 5455 proteins in 614 species: Archae - 0; Bacteria - 32; Metazoa - 10178; Fungi - 1983; Plants - 3508; Viruses - 603; Other Eukaryotes - 4177 (source: NCBI BLink).  protein_id AT5G03240.3p  transcript_id AT5G03240.3  protein_id AT5G03240.3p  transcript_id AT5G03240.3  
At5g03250	chr5:000774591	0.0	W/774591-774649,774950-775019,775132-776355,776430-776855	AT5G03250.1  CDS  gene_syn F15A17.280, F15A17_280  go_process response to light stimulus|GO:0009416||IEA  go_function signal transducer activity|GO:0004871||IEA  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process response to light stimulus|GO:0009416||ISS  go_function signal transducer activity|GO:0004871||ISS  product phototropic-responsive NPH3 family protein  note phototropic-responsive NPH3 family protein; FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: phototropic-responsive NPH3 family protein (TAIR:AT1G30440.1); Has 498 Blast hits to 490 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 66; Fungi - 0; Plants - 432; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G03250.1p  transcript_id AT5G03250.1  protein_id AT5G03250.1p  transcript_id AT5G03250.1  
At5g03260	chr5:000779246	0.0	C/779246-779338,778985-779136,778654-778898,778436-778564,777420-778343,777198-777328	AT5G03260.1  CDS  gene_syn F15A17.290, F15A17_290, LAC11, laccase 11  gene LAC11  function putative laccase, a member of laccase family of genes (17 members in Arabidopsis).  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process lignin catabolic process|GO:0046274||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function laccase activity|GO:0008471|15940465|ISS  product LAC11 (laccase 11); laccase  note laccase 11 (LAC11); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: IRX12 (IRREGULAR XYLEM 12); laccase (TAIR:AT2G38080.1); Has 6332 Blast hits to 5450 proteins in 861 species: Archae - 16; Bacteria - 2123; Metazoa - 384; Fungi - 2553; Plants - 911; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink).  protein_id AT5G03260.1p  transcript_id AT5G03260.1  protein_id AT5G03260.1p  transcript_id AT5G03260.1  
At5g03270	chr5:000781870	0.0	W/781870-782007,782244-782333,782542-782713,783539-783609,783690-783833,783923-783997	AT5G03270.1  CDS  gene_syn F15A17.300, F15A17_300  go_process lysine biosynthetic process via diaminopimelate|GO:0009089||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lysine biosynthetic process via diaminopimelate; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37210.1); Has 2763 Blast hits to 2762 proteins in 711 species: Archae - 6; Bacteria - 1568; Metazoa - 10; Fungi - 79; Plants - 188; Viruses - 0; Other Eukaryotes - 912 (source: NCBI BLink).  protein_id AT5G03270.1p  transcript_id AT5G03270.1  protein_id AT5G03270.1p  transcript_id AT5G03270.1  
At5g03280	chr5:000788589	0.0	W/788589-788837,788982-789068,789159-789269,789361-789573,789655-789840,789951-792611,792689-793066	AT5G03280.1  CDS  gene_syn CKR1, CYTOKININ RESISTANT 1, EIN2, ENHANCED RESPONSE TO ABA3, ERA3, ETHYLENE INSENSITIVE 2, F12E4.10, F12E4_10, ORE2, ORE3, ORESARA 2, ORESARA 3, PIR2  gene EIN2  function Involved in ethylene signal transduction. Acts downstream of CTR1. Positively regulates ORE1 and negatively regulates mir164A,B,C to regulate leaf senescence.  go_component membrane|GO:0016020||IEA  go_function transporter activity|GO:0005215||IEA  go_process establishment of planar polarity|GO:0001736|17084699|IGI  go_process response to osmotic stress|GO:0006970|17533512|IMP  go_process response to oxidative stress|GO:0006979|10381874|TAS  go_process cell death|GO:0008219||NAS  go_process response to heat|GO:0009408|15923322|IMP  go_process response to salt stress|GO:0009651|17533512|IMP  go_process response to ethylene stimulus|GO:0009723|10381874|IMP  go_process response to hormone stimulus|GO:0009725|10381874|IMP  go_process response to jasmonic acid stimulus|GO:0009753|10381874|IMP  go_process positive regulation of abscisic acid mediated signaling|GO:0009789|10899978|IMP  go_process jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway|GO:0009871|11418339|TAS  go_process ethylene mediated signaling pathway|GO:0009873|10381874|TAS  go_process auxin polar transport|GO:0009926|9032965|IMP  go_process regulation of stomatal movement|GO:0010119|16961732|IMP  go_process leaf senescence|GO:0010150|19229035|IMP  go_process sugar mediated signaling|GO:0010182|12663220|TAS  go_process negative regulation of defense response|GO:0031348|16732289|IMP  go_process defense response to bacterium|GO:0042742|19095898|IMP  go_process root hair cell differentiation|GO:0048765|17084699|IGI  go_process defense response to fungus|GO:0050832|17513501|IMP  go_process callose deposition in cell wall during defense response|GO:0052544|19095898|IMP  product EIN2 (ETHYLENE INSENSITIVE 2); transporter  note ETHYLENE INSENSITIVE 2 (EIN2); FUNCTIONS IN: transporter activity; INVOLVED IN: in 21 processes; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Natural resistance-associated macrophage protein (InterPro:IPR001046), Ethylene-insensitive 2 (InterPro:IPR017187); BEST Arabidopsis thaliana protein match is: NRAMP6; inorganic anion transmembrane transporter/ metal ion transmembrane transporter (TAIR:AT1G15960.1); Has 2476 Blast hits to 2358 proteins in 757 species: Archae - 28; Bacteria - 1475; Metazoa - 321; Fungi - 185; Plants - 198; Viruses - 0; Other Eukaryotes - 269 (source: NCBI BLink).  protein_id AT5G03280.1p  transcript_id AT5G03280.1  protein_id AT5G03280.1p  transcript_id AT5G03280.1  
At5g03285	chr5:000793514	0.0	W/793514-793717	AT5G03285.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G03285.1  
At5g03290	chr5:000794043	0.0	W/794043-794234,794380-794700,794800-794961,795090-795164,795337-795446,795539-795611,795748-795939	AT5G03290.1  CDS  gene_syn F12E4.20, F12E4_20  go_component mitochondrion|GO:0005739|17137349|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process tricarboxylic acid cycle|GO:0006099||IEA  go_process metabolic process|GO:0008152||IEA  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process metabolic process|GO:0008152||ISS  go_function isocitrate dehydrogenase (NAD+) activity|GO:0004449||ISS  product isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative  note isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative; FUNCTIONS IN: isocitrate dehydrogenase (NAD+) activity, ATP binding; INVOLVED IN: tricarboxylic acid cycle, metabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804), Isocitrate dehydrogenase NAD-dependent, mitochondrial (InterPro:IPR004434); BEST Arabidopsis thaliana protein match is: isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative (TAIR:AT3G09810.1); Has 12731 Blast hits to 12647 proteins in 1639 species: Archae - 252; Bacteria - 5773; Metazoa - 779; Fungi - 723; Plants - 237; Viruses - 0; Other Eukaryotes - 4967 (source: NCBI BLink).  protein_id AT5G03290.1p  transcript_id AT5G03290.1  protein_id AT5G03290.1p  transcript_id AT5G03290.1  
At5g03300	chr5:000796573	0.0	W/796573-796667,796857-796910,797145-797191,797289-797320,797417-797518,797685-797829,797916-798013,798125-798195,798282-798348,798446-798629,798855-798997	AT5G03300.1  CDS  gene_syn ADENOSINE KINASE 2, ADK2, F12E4.30, F12E4_30  gene ADK2  function Encodes adenosine kinase 2 (ADK2), a typical, constitutively expressed housekeeping enzyme. Shows a high sequence identity with ADK1. Involved in salvage synthesis of adenylates and methyl recycling. Enzyme activity is substantially inhibited in roots, siliques and dry seeds by an unknown compound. May contribute to cytokinin interconversion.  go_component plasma membrane|GO:0005886|17644812|IDA  go_function copper ion binding|GO:0005507|16526091|IDA  go_process adenosine salvage|GO:0006169|11115893|TAS  go_function adenosine kinase activity|GO:0004001|11115893|IDA  go_function adenosine kinase activity|GO:0004001|11115893|ISS  go_function kinase activity|GO:0016301||ISS  product ADK2 (ADENOSINE KINASE 2); adenosine kinase/ copper ion binding / kinase  note ADENOSINE KINASE 2 (ADK2); FUNCTIONS IN: adenosine kinase activity, copper ion binding, kinase activity; INVOLVED IN: adenosine salvage; LOCATED IN: plasma membrane; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173), Adenosine kinase (InterPro:IPR001805); BEST Arabidopsis thaliana protein match is: ADK1 (adenosine kinase 1); adenosine kinase/ copper ion binding (TAIR:AT3G09820.1); Has 6481 Blast hits to 6477 proteins in 1025 species: Archae - 89; Bacteria - 2966; Metazoa - 330; Fungi - 130; Plants - 293; Viruses - 0; Other Eukaryotes - 2673 (source: NCBI BLink).  protein_id AT5G03300.1p  transcript_id AT5G03300.1  protein_id AT5G03300.1p  transcript_id AT5G03300.1  
At5g03310	chr5:000799302	0.0	C/799302-799646	AT5G03310.1  CDS  gene_syn F12E4.40, F12E4_40  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT2G37030.1); Has 325 Blast hits to 323 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 325; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G03310.1p  transcript_id AT5G03310.1  protein_id AT5G03310.1p  transcript_id AT5G03310.1  
At5g03320	chr5:000802759	0.0	W/802759-803127,803198-803458,803529-803651,803733-804242	AT5G03320.1  CDS  gene_syn F12E4.50, F12E4_50  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT3G09830.2); Has 79071 Blast hits to 78344 proteins in 2745 species: Archae - 36; Bacteria - 6737; Metazoa - 34917; Fungi - 6236; Plants - 18004; Viruses - 338; Other Eukaryotes - 12803 (source: NCBI BLink).  protein_id AT5G03320.1p  transcript_id AT5G03320.1  protein_id AT5G03320.1p  transcript_id AT5G03320.1  
At5g03330	chr5:000807728	0.0	W/807728-808103,808190-808359,808436-808509,808587-808641,808740-808814,808909-808982,809067-809115,809217-809301,809400-809456,809553-809608	AT5G03330.1  CDS  gene_syn F12E4.60, F12E4_60  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function cysteine-type peptidase activity|GO:0008234||ISS  product OTU-like cysteine protease family protein  note OTU-like cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: OTU-like cysteine protease family protein (TAIR:AT5G04250.2); Has 747 Blast hits to 732 proteins in 134 species: Archae - 0; Bacteria - 4; Metazoa - 363; Fungi - 65; Plants - 143; Viruses - 13; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT5G03330.1p  transcript_id AT5G03330.1  protein_id AT5G03330.1p  transcript_id AT5G03330.1  
At5g03330	chr5:000807728	0.0	W/807728-808103,808190-808359,808436-808509,808587-808641,808740-808814,808909-808982,809067-809115,809217-809301,809400-809456,809553-809608	AT5G03330.2  CDS  gene_syn F12E4.60, F12E4_60  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function cysteine-type peptidase activity|GO:0008234||ISS  product OTU-like cysteine protease family protein  note OTU-like cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: OTU-like cysteine protease family protein (TAIR:AT5G04250.2); Has 747 Blast hits to 732 proteins in 134 species: Archae - 0; Bacteria - 4; Metazoa - 363; Fungi - 65; Plants - 143; Viruses - 13; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT5G03330.2p  transcript_id AT5G03330.2  protein_id AT5G03330.2p  transcript_id AT5G03330.2  
At5g03340	chr5:000813105	0.0	C/813105-813133,812796-812958,812308-812536,810506-812208,810091-810399	AT5G03340.1  CDS  gene_syn F12E4.70, F12E4_70  go_component cell wall|GO:0005618|16287169|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function binding|GO:0005488||IEA  go_function ATP binding|GO:0005524||IEA  go_function hydrolase activity|GO:0016787||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATPase activity|GO:0016887||ISS  product cell division cycle protein 48, putative / CDC48, putative  note cell division cycle protein 48, putative / CDC48, putative; FUNCTIONS IN: in 6 functions; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: CDC48 (CELL DIVISION CYCLE 48); ATPase/ identical protein binding (TAIR:AT3G09840.1); Has 44402 Blast hits to 25576 proteins in 1886 species: Archae - 977; Bacteria - 15729; Metazoa - 7172; Fungi - 4080; Plants - 3020; Viruses - 56; Other Eukaryotes - 13368 (source: NCBI BLink).  protein_id AT5G03340.1p  transcript_id AT5G03340.1  protein_id AT5G03340.1p  transcript_id AT5G03340.1  
At5g03345	chr5:000814196	0.0	W/814196-814268,814370-814422,814524-814624,815391-815478	AT5G03345.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Magnesium transporter (InterPro:IPR018937); Has 130 Blast hits to 130 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 98; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G03345.1p  transcript_id AT5G03345.1  protein_id AT5G03345.1p  transcript_id AT5G03345.1  
At5g03345	chr5:000814196	0.0	W/814196-814272,814374-814422,814524-814624,815391-815478	AT5G03345.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Magnesium transporter (InterPro:IPR018937); Has 120 Blast hits to 120 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G03345.2p  transcript_id AT5G03345.2  protein_id AT5G03345.2p  transcript_id AT5G03345.2  
At5g03350	chr5:000815804	0.0	C/815804-816628	AT5G03350.1  CDS  gene_syn F12E4.80, F12E4_80  go_component cell wall|GO:0005618|15593128|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function sugar binding|GO:0005529||IEA  go_process biological_process|GO:0008150||ND  go_function carbohydrate binding|GO:0030246||ISS  product legume lectin family protein  note legume lectin family protein; FUNCTIONS IN: carbohydrate binding, sugar binding; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast, cell wall, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), L-type lectin, plant (InterPro:IPR016363); BEST Arabidopsis thaliana protein match is: legume lectin family protein (TAIR:AT3G16530.1); Has 1336 Blast hits to 1325 proteins in 103 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 0; Plants - 1316; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G03350.1p  transcript_id AT5G03350.1  protein_id AT5G03350.1p  transcript_id AT5G03350.1  
At5g03360	chr5:000817954	0.0	W/817954-819930,820244-820288,820819-820862,820939-821063,821163-821270,822222-823974,824080-824825,825115-825149	AT5G03360.1  CDS  gene_syn F12E4.100, F12E4_100  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, hypocotyl, root, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT4G26380.1); Has 2474 Blast hits to 510 proteins in 22 species: Archae - 2; Bacteria - 7; Metazoa - 3; Fungi - 0; Plants - 2453; Viruses - 4; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G03360.1p  transcript_id AT5G03360.1  protein_id AT5G03360.1p  transcript_id AT5G03360.1  
At5g03377	chr5:000820169	0.0	C/820169-821016	AT5G03377.1  pseudogenic_transcript  pseudo  function pseudogene of acylphosphatase family protein  
At5g03370	chr5:000826772	0.0	C/826772-827020,825798-826064	AT5G03370.1  CDS  gene_syn F12E4.110, F12E4_110  go_function acylphosphatase activity|GO:0003998||IEA  go_process biological_process|GO:0008150||ND  go_function acylphosphatase activity|GO:0003998||ISS  product acylphosphatase family  note acylphosphatase family; FUNCTIONS IN: acylphosphatase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acylphosphatase (InterPro:IPR001792), Acylphosphatase, conserved site (InterPro:IPR017968); Has 1975 Blast hits to 1975 proteins in 725 species: Archae - 110; Bacteria - 1376; Metazoa - 196; Fungi - 18; Plants - 27; Viruses - 0; Other Eukaryotes - 248 (source: NCBI BLink).  protein_id AT5G03370.1p  transcript_id AT5G03370.1  protein_id AT5G03370.1p  transcript_id AT5G03370.1  
At5g03380	chr5:000834062	0.0	C/834062-834128,833670-833980,833290-833368,832400-833040	AT5G03380.2  CDS  gene_syn F12E4.120, F12E4_120  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT2G36950.1); Has 3295 Blast hits to 2477 proteins in 339 species: Archae - 9; Bacteria - 351; Metazoa - 872; Fungi - 219; Plants - 1393; Viruses - 0; Other Eukaryotes - 451 (source: NCBI BLink).  protein_id AT5G03380.2p  transcript_id AT5G03380.2  protein_id AT5G03380.2p  transcript_id AT5G03380.2  
At5g03380	chr5:000834293	0.0	C/834293-834301,834062-834200,833670-833980,833290-833368,832400-833040	AT5G03380.1  CDS  gene_syn F12E4.120, F12E4_120  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT2G36950.1); Has 3445 Blast hits to 2574 proteins in 351 species: Archae - 9; Bacteria - 365; Metazoa - 931; Fungi - 228; Plants - 1424; Viruses - 0; Other Eukaryotes - 488 (source: NCBI BLink).  protein_id AT5G03380.1p  transcript_id AT5G03380.1  protein_id AT5G03380.1p  transcript_id AT5G03380.1  
At5g03390	chr5:000835260	0.0	W/835260-836029,836258-836609	AT5G03390.1  CDS  gene_syn F12E4.130, F12E4_130  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68960.1); Has 169 Blast hits to 166 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 169; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G03390.1p  transcript_id AT5G03390.1  protein_id AT5G03390.1p  transcript_id AT5G03390.1  
At5g03400	chr5:000839052	0.0	C/839052-839202,837919-838280	AT5G03400.1  CDS  gene_syn F12E4.140, F12E4_140  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 54 Blast hits to 53 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT5G03400.1p  transcript_id AT5G03400.1  protein_id AT5G03400.1p  transcript_id AT5G03400.1  
At5g03406	chr5:000839966	0.0	W/839966-840250,840367-840462,840594-840682,840822-840951,841071-841163,841346-841444	AT5G03406.1  CDS  go_component cytoplasm|GO:0005737||IEA  go_process translation|GO:0006412||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_process histidyl-tRNA aminoacylation|GO:0006427||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function histidine-tRNA ligase activity|GO:0004821||IEA  go_function ATP binding|GO:0005524||IEA  product ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding  note ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding; FUNCTIONS IN: histidine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: histidyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (G, H, P and S), conserved region (InterPro:IPR002314), Histidyl-tRNA synthetase, class IIa (InterPro:IPR004516), Aminoacyl-tRNA synthetase, class II, conserved region (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: ATHRS1 (HISTIDYL-TRNA SYNTHETASE 1); histidine-tRNA ligase (TAIR:AT3G46100.1); Has 6280 Blast hits to 6274 proteins in 1634 species: Archae - 160; Bacteria - 3636; Metazoa - 145; Fungi - 91; Plants - 40; Viruses - 0; Other Eukaryotes - 2208 (source: NCBI BLink).  protein_id AT5G03406.1p  transcript_id AT5G03406.1  protein_id AT5G03406.1p  transcript_id AT5G03406.1  
At5g03415	chr5:000842842	0.0	W/842842-843092,843468-843547,843686-843729,843951-844013,844107-844253,844336-844404,844504-844602,844703-844773,844867-845200	AT5G03415.1  CDS  gene_syn ATDPB, DPB, DPB TRANSCRIPTION FACTOR  gene DPB  function Encodes a homolog of the animal DP protein. DP, in animals, forms a heterodimer with E2F and plays a central role in G1/S transition in the cell division cycle. DPB has been shown to interact with non phosphorylated E2Fc; when E2Fc is phosphorylated, the formation of the E2Fc/DPB heterodimer is lost.  go_component nucleus|GO:0005634|11891240|IDA  go_component cytoplasm|GO:0005737|11891240|IDA  go_process G1/S transition of mitotic cell cycle|GO:0000082|11108847|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process DNA endoreduplication|GO:0042023|16920782|IMP  go_function protein binding|GO:0005515|11108847|IPI  go_function protein heterodimerization activity|GO:0046982|16920782|IPI  product DPB; protein binding / protein heterodimerization  note DPB; FUNCTIONS IN: protein binding, protein heterodimerization activity; INVOLVED IN: DNA endoreduplication, regulation of transcription, DNA-dependent, G1/S transition of mitotic cell cycle; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Transcription factor E2F/dimerisation partner (TDP) (InterPro:IPR003316), Transcription factor DP, C-terminal (InterPro:IPR014889), Transcription factor DP (InterPro:IPR015648), Transcription factor DP, subgroup (InterPro:IPR016556); BEST Arabidopsis thaliana protein match is: DPA; transcription factor (TAIR:AT5G02470.3); Has 406 Blast hits to 398 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 199; Fungi - 6; Plants - 49; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).  protein_id AT5G03415.1p  transcript_id AT5G03415.1  protein_id AT5G03415.1p  transcript_id AT5G03415.1  
At5g03420	chr5:000845641	0.0	W/845641-845801,845924-846043,846209-847005,847179-847356,847621-847675,847785-847835,847922-847975,848052-848171,848313-848419,848552-848705	AT5G03420.1  CDS  gene_syn F12E4.170, F12E4_170  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: 5 -AMP-activated protein kinase-related (TAIR:AT1G27070.1); Has 1365 Blast hits to 895 proteins in 182 species: Archae - 6; Bacteria - 436; Metazoa - 414; Fungi - 132; Plants - 56; Viruses - 2; Other Eukaryotes - 319 (source: NCBI BLink).  protein_id AT5G03420.1p  transcript_id AT5G03420.1  protein_id AT5G03420.1p  transcript_id AT5G03420.1  
At5g03430	chr5:000852767	0.0	C/852767-852867,852377-852422,852120-852277,851925-852042,851749-851831,851377-851436,851059-851286,850766-850862,850601-850651,850422-850502,850211-850282,849991-850053,849759-849905,849527-849584,849394-849446,849237-849314	AT5G03430.1  CDS  gene_syn F12E4.190, F12E4_190  go_process Mo-molybdopterin cofactor biosynthetic process|GO:0006777||IEA  go_process metabolic process|GO:0008152||IEA  go_function transferase activity|GO:0016740||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function transferase activity|GO:0016740||ISS  product phosphoadenosine phosphosulfate (PAPS) reductase family protein  note phosphoadenosine phosphosulfate (PAPS) reductase family protein; FUNCTIONS IN: transferase activity; INVOLVED IN: Mo-molybdopterin cofactor biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Molybdopterin binding (InterPro:IPR001453), Phosphoadenosine phosphosulphate reductase (InterPro:IPR002500); Has 3440 Blast hits to 3362 proteins in 916 species: Archae - 114; Bacteria - 1592; Metazoa - 215; Fungi - 195; Plants - 24; Viruses - 0; Other Eukaryotes - 1300 (source: NCBI BLink).  protein_id AT5G03430.1p  transcript_id AT5G03430.1  protein_id AT5G03430.1p  transcript_id AT5G03430.1  
At5g03435	chr5:000854070	0.0	C/854070-855693,853365-853978	AT5G03435.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal, plant (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT3G61720.1); Has 511 Blast hits to 489 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 140; Fungi - 10; Plants - 328; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT5G03435.1p  transcript_id AT5G03435.1  protein_id AT5G03435.1p  transcript_id AT5G03435.1  
At5g03440	chr5:000857811	0.0	C/857811-857898,857544-857631,857387-857453,857179-857232	AT5G03440.1  CDS  gene_syn F12E4.200, F12E4_200  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54880.1); Has 72 Blast hits to 72 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G03440.1p  transcript_id AT5G03440.1  protein_id AT5G03440.1p  transcript_id AT5G03440.1  
At5g03440	chr5:000857811	0.0	C/857811-857898,857544-857631,857387-857453,857179-857232	AT5G03440.2  CDS  gene_syn F12E4.200, F12E4_200  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54880.1); Has 72 Blast hits to 72 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G03440.2p  transcript_id AT5G03440.2  protein_id AT5G03440.2p  transcript_id AT5G03440.2  
At5g03445	chr5:000858536	0.0	W/858536-858572	AT5G03445.1  tRNA  gene_syn 67579.TRNA-TYR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT5G03445.1  
At5g03450	chr5:000861832	0.0	C/861832-862238,861447-861522,861267-861356,861133-861177,860804-860884,860463-860541,860317-860375,860086-860196,859557-859993,858954-859461	AT5G03450.1  CDS  gene_syn F12E4.210, F12E4_210  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G03750.1); Has 8635 Blast hits to 3441 proteins in 239 species: Archae - 4; Bacteria - 107; Metazoa - 5750; Fungi - 444; Plants - 475; Viruses - 189; Other Eukaryotes - 1666 (source: NCBI BLink).  protein_id AT5G03450.1p  transcript_id AT5G03450.1  protein_id AT5G03450.1p  transcript_id AT5G03450.1  
At5g03452	chr5:000862397	0.0	C/862397-862469	AT5G03452.1  tRNA  gene_syn 67579.TRNA-PHE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Phe (anticodon: GAA)  transcript_id AT5G03452.1  
At5g03455	chr5:000862592	0.0	W/862592-862722,863129-863267,863779-863949	AT5G03455.1  CDS  gene_syn ACR2, ARATH;CDC25, ARSENATE REDUCTASE, ARSENATE REDUCTASE 2, CDC25  gene CDC25  function Encodes a homolog of yeast cell cycle regulator CDC25. It has a sole catalytic domain and devoid of the N-terminal regulatory region found in the human CDC25 and is capable of reducing the mitotic cell length of transformed fission yeast. Non-plant CDC25 proteins have been shown to do this. However, the gene is more or less constant, regardless of whether the tissue examined contained proliferative cells. Also described as having arsenate reductase activity involved in arsenate resistance.  go_component chloroplast|GO:0009507|18431481|IDA  go_process protein amino acid phosphorylation|GO:0006468|15336525|IDA  go_process response to arsenic|GO:0046685|16567632|IMP  go_function protein tyrosine phosphatase activity|GO:0004725|15336525|IDA  go_function arsenate reductase activity|GO:0030611|16567632|IGI  product CDC25; arsenate reductase/ protein tyrosine phosphatase  note CDC25; FUNCTIONS IN: protein tyrosine phosphatase activity, arsenate reductase activity; INVOLVED IN: protein amino acid phosphorylation, response to arsenic; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); Has 244 Blast hits to 244 proteins in 99 species: Archae - 0; Bacteria - 65; Metazoa - 2; Fungi - 92; Plants - 39; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT5G03455.1p  transcript_id AT5G03455.1  protein_id AT5G03455.1p  transcript_id AT5G03455.1  
At5g03460	chr5:000864391	0.0	W/864391-864393,864503-864580,865090-865191,865423-865509	AT5G03460.1  CDS  gene_syn F12E4.230, F12E4_230  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G03460.1p  transcript_id AT5G03460.1  protein_id AT5G03460.1p  transcript_id AT5G03460.1  
At5g03470	chr5:000866795	0.0	W/866795-867955,868546-868872	AT5G03470.1  CDS  gene_syn ATB  ALPHA, F12E4.240, F12E4_240  gene ATB  ALPHA  function Encodes B  regulatory subunit of PP2A (AtB alpha), putative size of 57 kDa.  go_component protein phosphatase type 2A complex|GO:0000159|9128737|ISS  go_component protein phosphatase type 2A complex|GO:0000159||ISS  go_process signal transduction|GO:0007165||ISS  go_process regulation of phosphorylation|GO:0042325|9128737|ISS  go_function protein phosphatase type 2A regulator activity|GO:0008601|9128737|ISS  go_function protein phosphatase type 2A regulator activity|GO:0008601||ISS  product ATB  ALPHA; protein phosphatase type 2A regulator  note ATB  ALPHA; FUNCTIONS IN: protein phosphatase type 2A regulator activity; INVOLVED IN: signal transduction, regulation of phosphorylation; LOCATED IN: protein phosphatase type 2A complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2A, regulatory B subunit, B56 (InterPro:IPR002554); BEST Arabidopsis thaliana protein match is: ATB  BETA; protein phosphatase type 2A regulator (TAIR:AT3G09880.1); Has 871 Blast hits to 853 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 492; Fungi - 106; Plants - 156; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT5G03470.1p  transcript_id AT5G03470.1  protein_id AT5G03470.1p  transcript_id AT5G03470.1  
At5g03480	chr5:000870835	0.0	C/870835-870855,870657-870700,870411-870554,870217-870336,869999-870145,869747-869911,869535-869645,869208-869421	AT5G03480.1  CDS  gene_syn F12E4.250, F12E4_250  go_component nucleus|GO:0005634|14617066|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  product nucleic acid binding / nucleotide binding  note nucleic acid binding / nucleotide binding; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nucleotide binding (TAIR:AT5G03495.1); Has 237 Blast hits to 133 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 32; Plants - 169; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT5G03480.1p  transcript_id AT5G03480.1  protein_id AT5G03480.1p  transcript_id AT5G03480.1  
At5g03490	chr5:000871550	0.0	W/871550-872947	AT5G03490.1  CDS  gene_syn F12E4.260, F12E4_260  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT1G51210.1); Has 3608 Blast hits to 3541 proteins in 237 species: Archae - 0; Bacteria - 50; Metazoa - 770; Fungi - 6; Plants - 2734; Viruses - 29; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT5G03490.1p  transcript_id AT5G03490.1  protein_id AT5G03490.1p  transcript_id AT5G03490.1  
At5g03495	chr5:000875005	0.0	C/875005-875025,874798-874850,874552-874701,874323-874484,874081-874191,873804-873987	AT5G03495.1  CDS  go_function nucleotide binding|GO:0000166||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleotide binding  note nucleotide binding; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nucleic acid binding / nucleotide binding (TAIR:AT5G03480.1); Has 94 Blast hits to 60 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G03495.1p  transcript_id AT5G03495.1  protein_id AT5G03495.1p  transcript_id AT5G03495.1  
At5g03500	chr5:000877526	0.0	C/877526-877660,877374-877443,877034-877200,876871-876944,876673-876733	AT5G03500.1  CDS  gene_syn F12E4.280, F12E4_280  go_component nucleus|GO:0005634||IEA  go_process positive regulation of transcription|GO:0045941||IEA  go_function transcription coactivator activity|GO:0003713||IEA  product transcription coactivator  note transcription coactivator; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: positive regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: MED7 (InterPro:IPR009244); BEST Arabidopsis thaliana protein match is: transcriptional co-activator-related (TAIR:AT5G03220.1); Has 303 Blast hits to 301 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 127; Fungi - 111; Plants - 29; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT5G03500.1p  transcript_id AT5G03500.1  protein_id AT5G03500.1p  transcript_id AT5G03500.1  
At5g03500	chr5:000877526	0.0	C/877526-877660,877374-877443,877034-877200,876871-876944,876673-876733	AT5G03500.2  CDS  gene_syn F12E4.280, F12E4_280  go_component nucleus|GO:0005634||IEA  go_process positive regulation of transcription|GO:0045941||IEA  go_function transcription coactivator activity|GO:0003713||IEA  product transcription coactivator  note transcription coactivator; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: positive regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: MED7 (InterPro:IPR009244); BEST Arabidopsis thaliana protein match is: transcriptional co-activator-related (TAIR:AT5G03220.1); Has 303 Blast hits to 301 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 127; Fungi - 111; Plants - 29; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT5G03500.2p  transcript_id AT5G03500.2  protein_id AT5G03500.2p  transcript_id AT5G03500.2  
At5g03510	chr5:000880353	0.0	W/880353-881231	AT5G03510.1  CDS  gene_syn F12E4.290, F12E4_290  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT2G28200.1); Has 1126 Blast hits to 1041 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 582; Fungi - 0; Plants - 523; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT5G03510.1p  transcript_id AT5G03510.1  protein_id AT5G03510.1p  transcript_id AT5G03510.1  
At5g03520	chr5:000883679	0.0	W/883679-883751,883994-884066,884145-884245,884390-884455,884559-884656,884733-884795,884880-884972,885075-885158	AT5G03520.1  CDS  gene_syn ARABIDOPSIS RAB HOMOLOG E1D, ATRAB-E1D, ATRAB8C, ATRABE1D, F12E4.300, F12E4_300, RAB HOMOLOG E1D, RAB-E1D  gene ATRAB8C  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product ATRAB8C; GTP binding  note ATRAB8C; FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E); GTP binding (TAIR:AT3G09900.1); Has 23746 Blast hits to 23700 proteins in 659 species: Archae - 15; Bacteria - 122; Metazoa - 13274; Fungi - 2886; Plants - 2178; Viruses - 19; Other Eukaryotes - 5252 (source: NCBI BLink).  protein_id AT5G03520.1p  transcript_id AT5G03520.1  protein_id AT5G03520.1p  transcript_id AT5G03520.1  
At5g03520	chr5:000883713	0.0	W/883713-883751,883994-884070,884145-884245,884390-884455,884559-884656,884733-884795,884880-884972,885075-885158	AT5G03520.2  CDS  gene_syn ARABIDOPSIS RAB HOMOLOG E1D, ATRAB-E1D, ATRAB8C, ATRABE1D, F12E4.300, F12E4_300, RAB HOMOLOG E1D, RAB-E1D  gene ATRAB8C  go_component endomembrane system|GO:0012505||IEA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product ATRAB8C; GTP binding  note ATRAB8C; FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E); GTP binding (TAIR:AT3G09900.1); Has 20562 Blast hits to 20537 proteins in 588 species: Archae - 2; Bacteria - 70; Metazoa - 11450; Fungi - 2426; Plants - 1791; Viruses - 19; Other Eukaryotes - 4804 (source: NCBI BLink).  protein_id AT5G03520.2p  transcript_id AT5G03520.2  protein_id AT5G03520.2p  transcript_id AT5G03520.2  
At5g03530	chr5:000886926	0.0	C/886926-887061,886518-886586,886361-886426,886149-886270,885933-886061,885741-885851	AT5G03530.1  CDS  gene_syn ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, ATRAB, ATRAB ALPHA, ATRAB18B, ATRABC2A, F12E4.310, F12E4_310, RAB GTPASE HOMOLOG C2A, RABC2A  gene RABC2A  function Encodes a member of the Rab GTPase family of proteins. This protein interacts with the tail region of a myosin XI protein (AT5G43900) in a GTP-dependent manner. CFP:RabC2a appears to co-localize with peroxisomes.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_component peroxisome|GO:0005777|18703495|IDA  go_function GTP binding|GO:0005525||ISS  go_function GTP-dependent protein binding|GO:0030742|18703495|IPI  go_function myosin XI tail binding|GO:0080115|18703495|IPI  product RABC2A (RAB GTPASE HOMOLOG C2A); GTP binding / GTP-dependent protein binding / myosin XI tail binding  note RAB GTPASE HOMOLOG C2A (RABC2A); FUNCTIONS IN: myosin XI tail binding, GTP binding, GTP-dependent protein binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction, regulation of transcription, DNA-dependent; LOCATED IN: peroxisome; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab18 (InterPro:IPR015598), RNA polymerase sigma factor 54, interaction (InterPro:IPR002078); BEST Arabidopsis thaliana protein match is: ATRABC2B (ARABIDOPSIS RAB GTPASE HOMOLOG C2B); ATP binding / GTP binding / transcription factor binding (TAIR:AT3G09910.1); Has 23828 Blast hits to 23798 proteins in 640 species: Archae - 11; Bacteria - 105; Metazoa - 13285; Fungi - 2923; Plants - 2267; Viruses - 19; Other Eukaryotes - 5218 (source: NCBI BLink).  protein_id AT5G03530.1p  transcript_id AT5G03530.1  protein_id AT5G03530.1p  transcript_id AT5G03530.1  
At5g03540	chr5:000889606	0.0	W/889606-889764,889888-889983,890104-890309,890690-890920,891506-891644,891722-891934,892546-892751,892870-893070,893172-893271,893361-893461,893554-893700,893799-893916	AT5G03540.1  CDS  gene_syn ATEXO70A1, F12E4.330, F12E4_330, exocyst subunit EXO70 family protein A1  gene ATEXO70A1  function AtEXO70A1 is a member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into nine clusters on the phylogenetic tree  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component exocyst|GO:0000145|18492870|IDA  go_component exocyst|GO:0000145||ISS  go_process vesicle docking during exocytosis|GO:0006904||ISS  go_process lateral root morphogenesis|GO:0010102|16942608|IMP  go_process root development|GO:0048364|16942608|IMP  go_function protein binding|GO:0005515||ISS  product ATEXO70A1 (exocyst subunit EXO70 family protein A1); protein binding  note exocyst subunit EXO70 family protein A1 (ATEXO70A1); FUNCTIONS IN: protein binding; INVOLVED IN: lateral root morphogenesis, vesicle docking during exocytosis, root development; LOCATED IN: plasma membrane, membrane, exocyst; EXPRESSED IN: cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: ATEXO70A2 (exocyst subunit EXO70 family protein A2); protein binding (TAIR:AT5G52340.1); Has 684 Blast hits to 629 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 174; Fungi - 107; Plants - 386; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT5G03540.1p  transcript_id AT5G03540.1  protein_id AT5G03540.1p  transcript_id AT5G03540.1  
At5g03540	chr5:000890194	0.0	W/890194-890309,890690-890920,891506-891644,891722-891934,892546-892751,892870-893070,893172-893271,893361-893461,893554-893700,893799-893916	AT5G03540.2  CDS  gene_syn ATEXO70A1, F12E4.330, F12E4_330, exocyst subunit EXO70 family protein A1  gene ATEXO70A1  function AtEXO70A1 is a member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into nine clusters on the phylogenetic tree  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component exocyst|GO:0000145|18492870|IDA  go_component exocyst|GO:0000145||ISS  go_process vesicle docking during exocytosis|GO:0006904||ISS  go_process lateral root morphogenesis|GO:0010102|16942608|IMP  go_process root development|GO:0048364|16942608|IMP  go_function protein binding|GO:0005515||ISS  product ATEXO70A1 (exocyst subunit EXO70 family protein A1); protein binding  note exocyst subunit EXO70 family protein A1 (ATEXO70A1); FUNCTIONS IN: protein binding; INVOLVED IN: lateral root morphogenesis, vesicle docking during exocytosis, root development; LOCATED IN: plasma membrane, membrane, exocyst; EXPRESSED IN: cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: ATEXO70A2 (exocyst subunit EXO70 family protein A2); protein binding (TAIR:AT5G52340.1); Has 615 Blast hits to 613 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 116; Fungi - 99; Plants - 383; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT5G03540.2p  transcript_id AT5G03540.2  protein_id AT5G03540.2p  transcript_id AT5G03540.2  
At5g03545	chr5:000895047	0.0	W/895047-895259	AT5G03545.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G03545.1p  transcript_id AT5G03545.1  protein_id AT5G03545.1p  transcript_id AT5G03545.1  
At5g03550	chr5:000895813	0.0	C/895813-896145	AT5G03550.1  CDS  gene_syn F12E4.340, F12E4_340  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: carpel; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT2G42460.1); Has 63 Blast hits to 57 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G03550.1p  transcript_id AT5G03550.1  protein_id AT5G03550.1p  transcript_id AT5G03550.1  
At5g03552	chr5:000897020	0.0	C/897020-897356	AT5G03552.1  miRNA  gene_syn MICRORNA822A, MIR822A  gene MIR822A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UGCGGGAAGCAUUUGCACAUG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR822A (MICRORNA822A); miRNA  transcript_id AT5G03552.1  
At5g03555	chr5:000898354	0.0	C/898354-900153	AT5G03555.1  CDS  go_process nucleobase, nucleoside, nucleotide and nucleic acid transport|GO:0015931||IEA  go_function nucleobase transmembrane transporter activity|GO:0015205||IEA  go_component membrane|GO:0016020|11152613|ISS  go_function nucleobase transmembrane transporter activity|GO:0015205||ISS  product permease, cytosine/purines, uracil, thiamine, allantoin family protein  note permease, cytosine/purines, uracil, thiamine, allantoin family protein; FUNCTIONS IN: nucleobase transmembrane transporter activity; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Permease for cytosine/purines, uracil, thiamine, allantoin (InterPro:IPR001248); Has 3266 Blast hits to 3264 proteins in 505 species: Archae - 38; Bacteria - 1518; Metazoa - 1; Fungi - 359; Plants - 27; Viruses - 0; Other Eukaryotes - 1323 (source: NCBI BLink).  protein_id AT5G03555.1p  transcript_id AT5G03555.1  protein_id AT5G03555.1p  transcript_id AT5G03555.1  
At5g03560	chr5:000902412	0.0	C/902412-902719,900838-901168,900673-900759	AT5G03560.1  CDS  gene_syn F12E4.360, F12E4_360  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleobase:cation symporter activity|GO:0015391||ISS  product nucleobase:cation symporter  note nucleobase:cation symporter; FUNCTIONS IN: nucleobase:cation symporter activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 361 Blast hits to 360 proteins in 165 species: Archae - 0; Bacteria - 229; Metazoa - 89; Fungi - 23; Plants - 13; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G03560.1p  transcript_id AT5G03560.1  protein_id AT5G03560.1p  transcript_id AT5G03560.1  
At5g03560	chr5:000902412	0.0	C/902412-902719,901452-902235	AT5G03560.2  CDS  gene_syn F12E4.360, F12E4_360  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleobase:cation symporter activity|GO:0015391||ISS  product nucleobase:cation symporter  note nucleobase:cation symporter; FUNCTIONS IN: nucleobase:cation symporter activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G38150.2).  protein_id AT5G03560.2p  transcript_id AT5G03560.2  protein_id AT5G03560.2p  transcript_id AT5G03560.2  
At5g03570	chr5:000904514	0.0	W/904514-904659,904735-905082,905173-905655,905734-905905,906015-906152,906256-906366,906453-906593	AT5G03570.1  CDS  gene_syn ATIREG2, F12E4.370, F12E4_370, IRON-REGULATED PROTEIN 2  gene ATIREG2  function Encodes a tonoplast localized nickel transport protein.  go_component plant-type vacuole membrane|GO:0009705|16790430|IDA  go_process transition metal ion transport|GO:0000041|16790430|IMP  go_function nickel ion transmembrane transporter activity|GO:0015099|16790430|IGI  product ATIREG2 (IRON-REGULATED PROTEIN 2); nickel ion transmembrane transporter  note IRON-REGULATED PROTEIN 2 (ATIREG2); FUNCTIONS IN: nickel ion transmembrane transporter activity; INVOLVED IN: transition metal ion transport; LOCATED IN: plant-type vacuole membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ferroportin1 (InterPro:IPR009716), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ATIREG1 (IRON-REGULATED PROTEIN 1); transporter (TAIR:AT2G38460.1); Has 275 Blast hits to 211 proteins in 67 species: Archae - 0; Bacteria - 22; Metazoa - 148; Fungi - 45; Plants - 44; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT5G03570.1p  transcript_id AT5G03570.1  protein_id AT5G03570.1p  transcript_id AT5G03570.1  
At5g03580	chr5:000907176	0.0	C/907176-907422,906956-907014	AT5G03580.1  CDS  gene_syn F17C15.1  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function RNA binding|GO:0003723||ISS  product polyadenylate-binding protein, putative / PABP, putative  note polyadenylate-binding protein, putative / PABP, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: PAB7 (POLY(A) BINDING PROTEIN 7); RNA binding / translation initiation factor (TAIR:AT2G36660.1); Has 5390 Blast hits to 4076 proteins in 295 species: Archae - 0; Bacteria - 184; Metazoa - 3253; Fungi - 694; Plants - 651; Viruses - 0; Other Eukaryotes - 608 (source: NCBI BLink).  protein_id AT5G03580.1p  transcript_id AT5G03580.1  protein_id AT5G03580.1p  transcript_id AT5G03580.1  
At5g03590	chr5:000908563	0.0	W/908563-908665,909057-909244,909546-909586,909695-909852,909944-910149	AT5G03590.1  CDS  gene_syn F17C15.10, F17C15_10  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_component cellular_component|GO:0005575||ND  product GDSL-motif lipase/hydrolase protein-related  note GDSL-motif lipase/hydrolase protein-related; FUNCTIONS IN: hydrolase activity, acting on ester bonds; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT5G03600.1); Has 165 Blast hits to 165 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 163; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G03590.1p  transcript_id AT5G03590.1  protein_id AT5G03590.1p  transcript_id AT5G03590.1  
At5g03600	chr5:000912807	0.0	W/912807-912990,913152-913426,913623-913929,914024-914226	AT5G03600.1  CDS  gene_syn F17C15.20, F17C15_20  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT5G03610.1); Has 1607 Blast hits to 1597 proteins in 108 species: Archae - 0; Bacteria - 131; Metazoa - 1; Fungi - 3; Plants - 1456; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT5G03600.1p  transcript_id AT5G03600.1  protein_id AT5G03600.1p  transcript_id AT5G03600.1  
At5g03610	chr5:000915650	0.0	W/915650-915713,915801-916010,917351-917628,917717-918023,918106-918326	AT5G03610.1  CDS  gene_syn F17C15.30, F17C15_30  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT3G09930.1); Has 1792 Blast hits to 1780 proteins in 164 species: Archae - 0; Bacteria - 263; Metazoa - 1; Fungi - 3; Plants - 1507; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT5G03610.1p  transcript_id AT5G03610.1  protein_id AT5G03610.1p  transcript_id AT5G03610.1  
At5g03620	chr5:000918738	0.0	W/918738-918836,918929-919020,919087-919184,919276-919422,919507-919612,919706-919910,919996-920304,920392-920492,920573-920818,920896-921218,921300-921874	AT5G03620.1  CDS  gene_syn F17C15.40, F17C15_40  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product subtilase family protein  note subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: XSP1 (xylem serine peptidase 1); identical protein binding / serine-type endopeptidase (TAIR:AT4G00230.1); Has 4503 Blast hits to 3922 proteins in 668 species: Archae - 147; Bacteria - 2593; Metazoa - 100; Fungi - 223; Plants - 902; Viruses - 0; Other Eukaryotes - 538 (source: NCBI BLink).  protein_id AT5G03620.1p  transcript_id AT5G03620.1  protein_id AT5G03620.1p  transcript_id AT5G03620.1  
At5g03630	chr5:000924563	0.0	C/924563-924616,924275-924346,924138-924189,923969-924049,923770-923888,923449-923668,923240-923358,923023-923148,922792-922932,922378-922701	AT5G03630.1  CDS  gene_syn ATMDAR2, F17C15.50, F17C15_50  gene ATMDAR2  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytosol|GO:0005829|16146528|IDA  go_function monodehydroascorbate reductase (NADH) activity|GO:0016656|16146528|ISS  product ATMDAR2; monodehydroascorbate reductase (NADH)  note ATMDAR2; FUNCTIONS IN: monodehydroascorbate reductase (NADH) activity; INVOLVED IN: response to cadmium ion, response to salt stress; LOCATED IN: cytosol; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156); BEST Arabidopsis thaliana protein match is: MDHAR (MONODEHYDROASCORBATE REDUCTASE); monodehydroascorbate reductase (NADH) (TAIR:AT3G09940.1); Has 15548 Blast hits to 15528 proteins in 1711 species: Archae - 317; Bacteria - 10742; Metazoa - 673; Fungi - 378; Plants - 332; Viruses - 0; Other Eukaryotes - 3106 (source: NCBI BLink).  protein_id AT5G03630.1p  transcript_id AT5G03630.1  protein_id AT5G03630.1p  transcript_id AT5G03630.1  
At5g03640	chr5:000927915	0.0	W/927915-929845,929932-930781	AT5G03640.1  CDS  gene_syn F17C15.60, F17C15_60  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, inflorescence meristem, male gametophyte; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT2G36350.1); Has 83700 Blast hits to 60335 proteins in 1597 species: Archae - 19; Bacteria - 7536; Metazoa - 37795; Fungi - 8844; Plants - 10854; Viruses - 310; Other Eukaryotes - 18342 (source: NCBI BLink).  protein_id AT5G03640.1p  transcript_id AT5G03640.1  protein_id AT5G03640.1p  transcript_id AT5G03640.1  
At5g03650	chr5:000931924	0.0	W/931924-932047,932218-932336,932470-932651,932836-932934,933064-933106,933479-933538,933648-933728,934103-934219,934414-934497,934692-934813,935006-935125,935216-935345,935446-935556,935687-935815,935982-936085,936177-936321,936398-936545,936634-936734,936817-936894,936971-937126,937225-937299,937381-937470	AT5G03650.1  CDS  gene_syn F17C15.70, F17C15_70, SBE2.2, starch branching enzyme 2.2  gene SBE2.2  function Encodes starch branching enzyme (E.C.2.4.1.18) similar to SBE2 from maize and rice. Expressed throughout the plant and highest in seedlings and cauline leaves.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process starch metabolic process|GO:0005982|17028209|IMP  go_process amylopectin biosynthetic process|GO:0010021|8616246|TAS  go_function 1,4-alpha-glucan branching enzyme activity|GO:0003844|17028209|IDA  go_function 1,4-alpha-glucan branching enzyme activity|GO:0003844|8616246|ISS  product SBE2.2 (starch branching enzyme 2.2); 1,4-alpha-glucan branching enzyme  note starch branching enzyme 2.2 (SBE2.2); FUNCTIONS IN: 1,4-alpha-glucan branching enzyme activity; INVOLVED IN: amylopectin biosynthetic process, starch metabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 13, N-terminal (InterPro:IPR004193), Immunoglobulin E-set (InterPro:IPR014756), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Alpha-amylase, C-terminal all beta (InterPro:IPR006048), Immunoglobulin-like fold (InterPro:IPR013783), Glycosyl hydrolase, family 13, all-beta (InterPro:IPR013780), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic region (InterPro:IPR006047); BEST Arabidopsis thaliana protein match is: SBE2.1 (starch branching enzyme 2.1); 1,4-alpha-glucan branching enzyme (TAIR:AT2G36390.1); Has 8410 Blast hits to 8373 proteins in 1284 species: Archae - 62; Bacteria - 5908; Metazoa - 265; Fungi - 171; Plants - 945; Viruses - 0; Other Eukaryotes - 1059 (source: NCBI BLink).  protein_id AT5G03650.1p  transcript_id AT5G03650.1  protein_id AT5G03650.1p  transcript_id AT5G03650.1  
At5g03660	chr5:000938068	0.0	W/938068-938319,938680-938790,938992-939072,939734-939811	AT5G03660.1  CDS  gene_syn F17C15.80, F17C15_80  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF662 (InterPro:IPR007033); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09980.1); Has 5235 Blast hits to 3832 proteins in 426 species: Archae - 74; Bacteria - 462; Metazoa - 2482; Fungi - 239; Plants - 192; Viruses - 22; Other Eukaryotes - 1764 (source: NCBI BLink).  protein_id AT5G03660.1p  transcript_id AT5G03660.1  protein_id AT5G03660.1p  transcript_id AT5G03660.1  
At5g03668	chr5:000947101	0.0	C/947101-948967	AT5G03668.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT5G03670  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G03668.1  
At5g03670	chr5:000947311	0.0	W/947311-948183,948740-948914,949396-949898	AT5G03670.1  CDS  gene_syn F17C15.90, F17C15_90  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36420.1); Has 763 Blast hits to 611 proteins in 83 species: Archae - 0; Bacteria - 7; Metazoa - 452; Fungi - 57; Plants - 38; Viruses - 24; Other Eukaryotes - 185 (source: NCBI BLink).  protein_id AT5G03670.1p  transcript_id AT5G03670.1  protein_id AT5G03670.1p  transcript_id AT5G03670.1  
At5g03680	chr5:000957858	0.0	W/957858-958318,959446-960760	AT5G03680.1  CDS  gene_syn F17C15.100, F17C15_100, PETAL LOSS, PTL  gene PTL  function Recessive mutations are defective in organ initiation and orientation in the second whorl. This gene encodes a trihelix transcription factor whose expression is limited to margins of floral and vegetative organs. Overexpression and double mutant analyses suggest that this gene is involved in limiting lateral growth of organs.  go_component nucleus|GO:0005634|15269176|IDA  go_process response to chitin|GO:0010200|17722694|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process negative regulation of organ growth|GO:0046621|15269176|IMP  go_process petal development|GO:0048441|10572040|IMP  go_process establishment of petal orientation|GO:0048498|10572040|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|15269176|TAS  product PTL (PETAL LOSS); transcription factor  note PETAL LOSS (PTL); FUNCTIONS IN: transcription factor activity; INVOLVED IN: establishment of petal orientation, petal development, response to chitin, negative regulation of organ growth, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: EDA31 (embryo sac development arrest 31); transcription factor (TAIR:AT3G10000.1); Has 922 Blast hits to 697 proteins in 123 species: Archae - 0; Bacteria - 103; Metazoa - 214; Fungi - 29; Plants - 399; Viruses - 28; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT5G03680.1p  transcript_id AT5G03680.1  protein_id AT5G03680.1p  transcript_id AT5G03680.1  
At5g03690	chr5:000964853	0.0	C/964853-964982,964439-964666,963389-964212	AT5G03690.1  CDS  gene_syn F17C15.110, F17C15_110  go_function catalytic activity|GO:0003824||IEA  go_function fructose-bisphosphate aldolase activity|GO:0004332||IEA  go_process pentose-phosphate shunt|GO:0006098||TAS  product fructose-bisphosphate aldolase, putative  note fructose-bisphosphate aldolase, putative; FUNCTIONS IN: fructose-bisphosphate aldolase activity, catalytic activity; INVOLVED IN: pentose-phosphate shunt; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741); BEST Arabidopsis thaliana protein match is: fructose-bisphosphate aldolase, putative (TAIR:AT2G36460.1); Has 4408 Blast hits to 4403 proteins in 738 species: Archae - 0; Bacteria - 420; Metazoa - 1258; Fungi - 2; Plants - 339; Viruses - 0; Other Eukaryotes - 2389 (source: NCBI BLink).  protein_id AT5G03690.1p  transcript_id AT5G03690.1  protein_id AT5G03690.1p  transcript_id AT5G03690.1  
At5g03690	chr5:000964955	0.0	C/964955-964982,964439-964666,963389-964212	AT5G03690.2  CDS  gene_syn F17C15.110, F17C15_110  go_function catalytic activity|GO:0003824||IEA  go_function fructose-bisphosphate aldolase activity|GO:0004332||IEA  go_process pentose-phosphate shunt|GO:0006098||TAS  product fructose-bisphosphate aldolase, putative  note fructose-bisphosphate aldolase, putative; FUNCTIONS IN: fructose-bisphosphate aldolase activity, catalytic activity; INVOLVED IN: pentose-phosphate shunt; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741); BEST Arabidopsis thaliana protein match is: fructose-bisphosphate aldolase, putative (TAIR:AT2G36460.1); Has 4408 Blast hits to 4403 proteins in 738 species: Archae - 0; Bacteria - 420; Metazoa - 1258; Fungi - 2; Plants - 339; Viruses - 0; Other Eukaryotes - 2389 (source: NCBI BLink).  protein_id AT5G03690.2p  transcript_id AT5G03690.2  protein_id AT5G03690.2p  transcript_id AT5G03690.2  
At5g03700	chr5:000965874	0.0	C/965874-967322	AT5G03700.1  CDS  gene_syn F17C15.120, F17C15_120  go_component plasma membrane|GO:0005886|17317660|IDA  go_function sugar binding|GO:0005529||IEA  product PAN domain-containing protein  note PAN domain-containing protein; FUNCTIONS IN: sugar binding; LOCATED IN: plasma membrane; EXPRESSED IN: stem, sperm cell, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-like, type 2 (InterPro:IPR013227), Apple-like (InterPro:IPR003609); BEST Arabidopsis thaliana protein match is: SD2-5 (S-DOMAIN-2 5); carbohydrate binding / kinase/ protein kinase (TAIR:AT4G32300.1); Has 1258 Blast hits to 1243 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1258; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G03700.1p  transcript_id AT5G03700.1  protein_id AT5G03700.1p  transcript_id AT5G03700.1  
At5g03705	chr5:000970799	0.0	C/970799-970879	AT5G03705.1  tRNA  gene_syn 67580.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: AAG)  transcript_id AT5G03705.1  
At5g03710	chr5:000971107	0.0	W/971107-971119,971395-971627	AT5G03710.1  CDS  gene_syn F17C15.130, F17C15_130  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 418215 Blast hits to 44992 proteins in 1786 species: Archae - 1246; Bacteria - 21242; Metazoa - 162683; Fungi - 47502; Plants - 19770; Viruses - 6601; Other Eukaryotes - 159171 (source: NCBI BLink).  protein_id AT5G03710.1p  transcript_id AT5G03710.1  protein_id AT5G03710.1p  transcript_id AT5G03710.1  
At5g03720	chr5:000973342	0.0	C/973342-973683,971913-972809	AT5G03720.1  CDS  gene_syn AT-HSFA3, F17C15.140, F17C15_140, HEAT SHOCK TRANSCRIPTION FACTOR A3, HSFA3  gene AT-HSFA3  function Member of Heat Stress Transcription Factor (Hsf) family. Expression is regulated by DREB2A and in turn HSFA3 regulates the expression of hsps Hsp18.1-CI and Hsp26.5-MII35S. Involved in establishing thermotolerence.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|17999647|IDA  go_process response to heat|GO:0009408|17999647|IEP  go_process response to chitin|GO:0010200|17722694|IEP  go_function DNA binding|GO:0003677|17999647|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AT-HSFA3; DNA binding / transcription factor  note AT-HSFA3; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to heat, response to chitin, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: ATHSFA1D; DNA binding / transcription factor (TAIR:AT1G32330.1); Has 1300 Blast hits to 1296 proteins in 159 species: Archae - 0; Bacteria - 6; Metazoa - 266; Fungi - 318; Plants - 457; Viruses - 0; Other Eukaryotes - 253 (source: NCBI BLink).  protein_id AT5G03720.1p  transcript_id AT5G03720.1  protein_id AT5G03720.1p  transcript_id AT5G03720.1  
At5g03730	chr5:000979013	0.0	C/979013-979660,978536-978837,978297-978438,977976-978079,977635-977840,977002-977277,976771-976811,976426-976494,976245-976345,976071-976155,975878-975976,975576-975644,975341-975472,975132-975226,974958-975054	AT5G03730.1  CDS  gene_syn CONSTITUTIVE TRIPLE RESPONSE 1, CTR1, F17C15.150, F17C15_150, SERINE/THREONINE-PROTEIN KINASE CTR1, SIS1, SUGAR-INSENSITIVE 1  gene CTR1  function Homologous to the RAF family of serine/threonine protein kinases. Negative regulator in the ethylene signal transduction pathway. Interacts with the putative ethylene receptors ETR1 and ERS. Constitutively expressed.  go_component endoplasmic reticulum membrane|GO:0005789|12821658|IDA  go_process gibberellin biosynthetic process|GO:0009686|17389366|IMP  go_process response to ethylene stimulus|GO:0009723|8431946|IMP  go_process response to sucrose stimulus|GO:0009744|11162499|IMP  go_process negative regulation of ethylene mediated signaling pathway|GO:0010105|12535337|TAS  go_process negative regulation of ethylene mediated signaling pathway|GO:0010105|12821658|TAS  go_process negative regulation of ethylene mediated signaling pathway|GO:0010105|8431946|TAS  go_process negative regulation of ethylene mediated signaling pathway|GO:0010105|9560288|TAS  go_process sugar mediated signaling|GO:0010182|12663220|TAS  go_process stem cell division|GO:0017145|17656722|IMP  go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|17389366|IMP  go_process post-embryonic root development|GO:0048528|17656722|IMP  go_function protein serine/threonine kinase activity|GO:0004674|12535337|IDA  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function protein binding|GO:0005515|12535337|IPI  go_function kinase activity|GO:0016301||ISS  product CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1); kinase/ protein binding / protein serine/threonine kinase/ protein serine/threonine/tyrosine kinase  note CONSTITUTIVE TRIPLE RESPONSE 1 (CTR1); FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, protein binding, protein serine/threonine kinase activity, kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: endoplasmic reticulum membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase, putative (TAIR:AT4G24480.1); Has 92014 Blast hits to 90515 proteins in 3495 species: Archae - 51; Bacteria - 7669; Metazoa - 41240; Fungi - 7451; Plants - 18899; Viruses - 473; Other Eukaryotes - 16231 (source: NCBI BLink).  protein_id AT5G03730.1p  transcript_id AT5G03730.1  protein_id AT5G03730.1p  transcript_id AT5G03730.1  
At5g03730	chr5:000979013	0.0	C/979013-979660,978536-978837,978297-978438,977976-978079,977635-977840,977002-977277,976771-976811,976426-976494,976245-976345,976071-976155,975878-975976,975576-975644,975341-975472,975132-975226,974958-975054	AT5G03730.2  CDS  gene_syn CONSTITUTIVE TRIPLE RESPONSE 1, CTR1, F17C15.150, F17C15_150, SERINE/THREONINE-PROTEIN KINASE CTR1, SIS1, SUGAR-INSENSITIVE 1  gene CTR1  function Homologous to the RAF family of serine/threonine protein kinases. Negative regulator in the ethylene signal transduction pathway. Interacts with the putative ethylene receptors ETR1 and ERS. Constitutively expressed.  go_component endoplasmic reticulum membrane|GO:0005789|12821658|IDA  go_process gibberellin biosynthetic process|GO:0009686|17389366|IMP  go_process response to ethylene stimulus|GO:0009723|8431946|IMP  go_process response to sucrose stimulus|GO:0009744|11162499|IMP  go_process negative regulation of ethylene mediated signaling pathway|GO:0010105|12535337|TAS  go_process negative regulation of ethylene mediated signaling pathway|GO:0010105|12821658|TAS  go_process negative regulation of ethylene mediated signaling pathway|GO:0010105|8431946|TAS  go_process negative regulation of ethylene mediated signaling pathway|GO:0010105|9560288|TAS  go_process sugar mediated signaling|GO:0010182|12663220|TAS  go_process stem cell division|GO:0017145|17656722|IMP  go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|17389366|IMP  go_process post-embryonic root development|GO:0048528|17656722|IMP  go_function protein serine/threonine kinase activity|GO:0004674|12535337|IDA  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function protein binding|GO:0005515|12535337|IPI  go_function kinase activity|GO:0016301||ISS  product CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1); kinase/ protein binding / protein serine/threonine kinase/ protein serine/threonine/tyrosine kinase  note CONSTITUTIVE TRIPLE RESPONSE 1 (CTR1); FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, protein binding, protein serine/threonine kinase activity, kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: endoplasmic reticulum membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase, putative (TAIR:AT4G24480.1); Has 92014 Blast hits to 90515 proteins in 3495 species: Archae - 51; Bacteria - 7669; Metazoa - 41240; Fungi - 7451; Plants - 18899; Viruses - 473; Other Eukaryotes - 16231 (source: NCBI BLink).  protein_id AT5G03730.2p  transcript_id AT5G03730.2  protein_id AT5G03730.2p  transcript_id AT5G03730.2  
At5g03740	chr5:000981994	0.0	W/981994-982006,982339-982409,982487-982698,982812-982861,982975-983114,983328-983420,983557-983650,983750-983961	AT5G03740.1  CDS  gene_syn F17C15.160, F17C15_160, HD2C, HDT3, HISTONE DEACETYLASE 2C, HISTONE DEACETYLASE 3  gene HD2C  function HD2-type histone deacetylase HDAC. Involved in the ABA and stress responses. Mediates transcriptional repression  go_component nucleolus|GO:0005730|15496452|IDA  go_component nucleolus|GO:0005730|16553900|IDA  go_process response to water deprivation|GO:0009414|16553900|IMP  go_process response to salt stress|GO:0009651|16553900|IMP  go_process response to abscisic acid stimulus|GO:0009737|16553900|IEP  go_function nucleic acid binding|GO:0003676||ISS  go_function histone deacetylase activity|GO:0004407|12466527|ISS  go_function zinc ion binding|GO:0008270||ISS  go_function transcription repressor activity|GO:0016564|12694598|IDA  product HD2C (HISTONE DEACETYLASE 2C); histone deacetylase/ nucleic acid binding / transcription repressor/ zinc ion binding  note HISTONE DEACETYLASE 2C (HD2C); FUNCTIONS IN: histone deacetylase activity, transcription repressor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: response to salt stress, response to water deprivation, response to abscisic acid stimulus; LOCATED IN: nucleolus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: HDA3 (HISTONE DEACETYLASE 3); histone deacetylase/ nucleic acid binding / zinc ion binding (TAIR:AT3G44750.1); Has 45776 Blast hits to 17812 proteins in 874 species: Archae - 82; Bacteria - 16097; Metazoa - 13875; Fungi - 4412; Plants - 1403; Viruses - 504; Other Eukaryotes - 9403 (source: NCBI BLink).  protein_id AT5G03740.1p  transcript_id AT5G03740.1  protein_id AT5G03740.1p  transcript_id AT5G03740.1  
At5g03745	chr5:000984367	0.0	W/984367-984449	AT5G03745.1  tRNA  gene_syn 67580.TRNA-LEU-2, 67581.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: TAA)  transcript_id AT5G03745.1  
At5g03750	chr5:000984796	0.0	W/984796-984905,985019-985244,985324-985497	AT5G03750.1  CDS  gene_syn F17C15.170, F17C15_170  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G03450.1); Has 23 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G03750.1p  transcript_id AT5G03750.1  protein_id AT5G03750.1p  transcript_id AT5G03750.1  
At5g03760	chr5:000989758	0.0	C/989758-990087,989574-989672,989244-989496,987170-987280,986930-987066,986728-986841,986441-986640,986167-986361,985910-986072	AT5G03760.1  CDS  gene_syn ATCSLA09, ATCSLA9, CELLULOSE SYNTHASE LIKE A9, CSLA09, CSLA9, F17C15.180, F17C15_180, RAT4, RESISTANT TO AGROBACTERIUM TRANSFORMATION 4  gene ATCSLA09  function encodes a beta-mannan synthase that is required for agrobacterium-mediated plant genetic transformation involves a complex interaction between the bacterium and the host plant. 3  UTR is involved in transcriptional regulation and the gene is expressed in the elongation zone of the root.  go_component cellular_component|GO:0005575||ND  go_process DNA mediated transformation|GO:0009294|10323222|IMP  go_process response to bacterium|GO:0009617|10323222|IMP  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function mannan synthase activity|GO:0051753|15647349|IDA  product ATCSLA09; mannan synthase/ transferase, transferring glycosyl groups  note ATCSLA09; FUNCTIONS IN: transferase activity, transferring glycosyl groups, mannan synthase activity; INVOLVED IN: DNA mediated transformation, response to bacterium; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: ATCSLA02; mannan synthase/ transferase, transferring glycosyl groups (TAIR:AT5G22740.1); Has 2848 Blast hits to 2846 proteins in 789 species: Archae - 93; Bacteria - 2085; Metazoa - 38; Fungi - 68; Plants - 294; Viruses - 11; Other Eukaryotes - 259 (source: NCBI BLink).  protein_id AT5G03760.1p  transcript_id AT5G03760.1  protein_id AT5G03760.1p  transcript_id AT5G03760.1  
At5g03770	chr5:000995191	0.0	W/995191-995383,995515-995608,995710-995752,995826-995948,996042-996161,996242-996320,996459-996575,996779-996876,996977-997070,997158-997277,997360-997622	AT5G03770.1  CDS  gene_syn F17C15.190, F17C15_190  go_component mitochondrion|GO:0005739||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process biosynthetic process|GO:0009058||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product 3-deoxy-D-manno-octulosonic acid transferase-related  note 3-deoxy-D-manno-octulosonic acid transferase-related; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process, carbohydrate metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Three-deoxy-D-manno-octulosonic-acid transferase, N-terminal (InterPro:IPR007507); Has 3832 Blast hits to 3832 proteins in 736 species: Archae - 0; Bacteria - 1449; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 2371 (source: NCBI BLink).  protein_id AT5G03770.1p  transcript_id AT5G03770.1  protein_id AT5G03770.1p  transcript_id AT5G03770.1  
At5g03775	chr5:000998942	0.0	W/998942-999014	AT5G03775.1  tRNA  gene_syn 67580.TRNA-ARG-1, 67581.TRNA-ARG-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: TCT)  transcript_id AT5G03775.1  
At5g03780	chr5:001000861	0.0	C/1000861-1000947,999690-1000606,999535-999607,999266-999451	AT5G03780.1  CDS  gene_syn F17C15.200, F17C15_200, TRF-LIKE 10, TRFL10  gene TRFL10  function Encodes a protein whose sequence is similar to human telomere proteins. This belongs to TRFL family 2, which do not show DNA binding in vitro.  go_function DNA binding|GO:0003677||IEA  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  product TRFL10 (TRF-LIKE 10); DNA binding  note TRF-LIKE 10 (TRFL10); FUNCTIONS IN: DNA binding; INVOLVED IN: response to salicylic acid stimulus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: DNA binding / protein binding / zinc ion binding (TAIR:AT1G01150.1); Has 195 Blast hits to 188 proteins in 59 species: Archae - 0; Bacteria - 4; Metazoa - 83; Fungi - 17; Plants - 42; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT5G03780.1p  transcript_id AT5G03780.1  protein_id AT5G03780.1p  transcript_id AT5G03780.1  
At5g03790	chr5:001004985	0.0	W/1004985-1005102,1005655-1006010,1006140-1006373	AT5G03790.1  CDS  gene_syn ATHB51, HB51, LATE MERISTEM IDENTITY1, LMI1  gene HB51  function Encodes a homeodomain leucine zipper class I (HD-Zip I) meristem identity regulator that acts together with LFY to induce CAL expression. It binds to the CAL promoter proximal CAATNATTG element. LMI1 acts primarily downstream of LFY in meristem identity regulation. The interaction between LFY, LMI1 and CAL resembles a feed-forward loop transcriptional network motif. The gene also had additional LFY-independent roles in leaf morphogenesis and bract formation.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process leaf morphogenesis|GO:0009965|16554366|IMP  go_process bract formation|GO:0010434|16554366|IGI  go_process positive regulation of transcription|GO:0045941|16554366|IGI  go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|16554366|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function sequence-specific DNA binding|GO:0043565|16554366|IDA  product HB51; DNA binding / sequence-specific DNA binding / transcription factor  note HB51; FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding, DNA binding; INVOLVED IN: bract formation, positive regulation of transcription, regulation of transcription, DNA-dependent, regulation of timing of transition from vegetative to reproductive phase, leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ATHB22 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 22); DNA binding / transcription factor (TAIR:AT2G36610.1); Has 9102 Blast hits to 9081 proteins in 495 species: Archae - 0; Bacteria - 0; Metazoa - 7413; Fungi - 93; Plants - 1429; Viruses - 0; Other Eukaryotes - 167 (source: NCBI BLink).  protein_id AT5G03790.1p  transcript_id AT5G03790.1  protein_id AT5G03790.1p  transcript_id AT5G03790.1  
At5g03795	chr5:001010074	0.0	C/1010074-1010373,1009361-1009602,1008298-1008646,1007554-1008219	AT5G03795.1  CDS  go_component membrane|GO:0016020||IEA  product unknown protein  note LOCATED IN: membrane; EXPRESSED IN: embryo, sepal, flower; EXPRESSED DURING: C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: exostosin family protein (TAIR:AT3G07620.1); Has 866 Blast hits to 860 proteins in 87 species: Archae - 0; Bacteria - 9; Metazoa - 265; Fungi - 4; Plants - 504; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT5G03795.1p  transcript_id AT5G03795.1  protein_id AT5G03795.1p  transcript_id AT5G03795.1  
At5g03800	chr5:001010894	0.0	C/1010894-1013584	AT5G03800.1  CDS  gene_syn EMB166, EMB175, EMBRYO DEFECTIVE 166, EMBRYO DEFECTIVE 175, MED24.10, MED24_10, emb1899, embryo defective 1899  gene EMB175  function Encodes a protein with a large central domain of 14 internal pentatricopeptide motifs (some degenerate) arranged in tandem. Mutations in this locus result in embryo lethality.  go_component chloroplast|GO:0009507||IEA  go_component membrane|GO:0016020||ISS  go_process embryonic development ending in seed dormancy|GO:0009793|15647901|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function catalytic activity|GO:0003824||ISS  product EMB175 (EMBRYO DEFECTIVE 175); catalytic  note EMBRYO DEFECTIVE 175 (EMB175); FUNCTIONS IN: catalytic activity; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast, membrane; EXPRESSED IN: flower, root, leaf; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G16860.1); Has 14635 Blast hits to 4791 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 8; Plants - 14386; Viruses - 0; Other Eukaryotes - 216 (source: NCBI BLink).  protein_id AT5G03800.1p  transcript_id AT5G03800.1  protein_id AT5G03800.1p  transcript_id AT5G03800.1  
At5g03810	chr5:001015102	0.0	C/1015102-1015345,1014886-1015016,1014558-1014791,1014221-1014479,1013939-1014132	AT5G03810.1  CDS  gene_syn MED24.11  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function lipase activity|GO:0016298||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product carboxylesterase/ hydrolase, acting on ester bonds / lipase  note carboxylesterase/ hydrolase, acting on ester bonds / lipase; FUNCTIONS IN: hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT5G03820.1); Has 1927 Blast hits to 1913 proteins in 211 species: Archae - 0; Bacteria - 335; Metazoa - 1; Fungi - 22; Plants - 1546; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT5G03810.1p  transcript_id AT5G03810.1  protein_id AT5G03810.1p  transcript_id AT5G03810.1  
At5g03820	chr5:001017008	0.0	C/1017008-1017251,1016779-1016909,1016445-1016678,1016095-1016356,1015803-1015996	AT5G03820.1  CDS  gene_syn MED24.12  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function lipase activity|GO:0016298||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: carboxylesterase/ hydrolase, acting on ester bonds / lipase (TAIR:AT5G03810.1); Has 1896 Blast hits to 1881 proteins in 197 species: Archae - 0; Bacteria - 297; Metazoa - 1; Fungi - 19; Plants - 1555; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT5G03820.1p  transcript_id AT5G03820.1  protein_id AT5G03820.1p  transcript_id AT5G03820.1  
At5g03830	chr5:001018666	0.0	W/1018666-1018795,1018882-1018958,1019041-1019181,1019277-1019336,1019383-1019592,1019688-1019753,1019966-1020022,1020162-1020218	AT5G03830.1  CDS  gene_syn MED24.13, MED24_13  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: p21Cip1-binding protein-related (TAIR:AT2G44510.1); Has 225 Blast hits to 225 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 68; Plants - 27; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT5G03830.1p  transcript_id AT5G03830.1  protein_id AT5G03830.1p  transcript_id AT5G03830.1  
At5g03837	chr5:001023528	0.0	C/1023528-1023683	AT5G03837.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G03837.1p  transcript_id AT5G03837.1  protein_id AT5G03837.1p  transcript_id AT5G03837.1  
At5g03840	chr5:001025587	0.0	C/1025587-1025796,1025315-1025376,1025068-1025108,1024760-1024980	AT5G03840.1  CDS  gene_syn MED24.6, TERMINAL FLOWER 1, TFL-1, TFL1  gene TFL1  function Controls inflorescence meristem identity. Involved in the floral initiation process. Ortholog of the Antirrhinum gene CENTRORADIALIS (CEN). Involved in protein trafficking to the protein storage vacuole.  go_component cytoplasm|GO:0005737|17369370|IEP  go_component vacuole|GO:0005773|18003908|IDA  go_component plasma membrane|GO:0005886|18003908|IDA  go_component vesicle|GO:0031982|18003908|IDA  go_process protein targeting to vacuole|GO:0006623|18003908|IMP  go_process response to sucrose stimulus|GO:0009744|11553753|IMP  go_process negative regulation of flower development|GO:0009910|12324621|IMP  go_function phosphatidylethanolamine binding|GO:0008429||ISS  product TFL1 (TERMINAL FLOWER 1); phosphatidylethanolamine binding  note TERMINAL FLOWER 1 (TFL1); FUNCTIONS IN: phosphatidylethanolamine binding; INVOLVED IN: negative regulation of flower development, response to sucrose stimulus, protein targeting to vacuole; LOCATED IN: vesicle, plasma membrane, vacuole, cytoplasm; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylethanolamine-binding, conserved site (InterPro:IPR001858), Phosphatidylethanolamine-binding protein PEBP (InterPro:IPR008914); BEST Arabidopsis thaliana protein match is: ATC (ARABIDOPSIS THALIANA CENTRORADIALIS); phosphatidylethanolamine binding (TAIR:AT2G27550.1); Has 1335 Blast hits to 1335 proteins in 226 species: Archae - 0; Bacteria - 0; Metazoa - 571; Fungi - 92; Plants - 657; Viruses - 3; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT5G03840.1p  transcript_id AT5G03840.1  protein_id AT5G03840.1p  transcript_id AT5G03840.1  
At5g03850	chr5:001028542	0.0	C/1028542-1028736	AT5G03850.1  CDS  gene_syn MED24.14  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S28 (RPS28B)  note 40S ribosomal protein S28 (RPS28B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, ribosome, cell wall, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S28e (InterPro:IPR000289); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S28 (RPS28A) (TAIR:AT3G10090.1); Has 804 Blast hits to 804 proteins in 280 species: Archae - 145; Bacteria - 0; Metazoa - 262; Fungi - 104; Plants - 121; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink).  protein_id AT5G03850.1p  transcript_id AT5G03850.1  protein_id AT5G03850.1p  transcript_id AT5G03850.1  
At5g03858	chr5:001031564	0.0	C/1031564-1032032	AT5G03858.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G03960; IQD12 (IQ-domain 12); calmodulin binding protein  
At5g03860	chr5:001034153	0.0	C/1034153-1034527,1033457-1033782,1033052-1033382,1032276-1032932	AT5G03860.1  CDS  gene_syn MALATE SYNTHASE, MED24.5, MLS  gene MLS  function Encodes a protein with malate synthase activity.  go_process glyoxylate cycle|GO:0006097||IEA  go_function malate synthase activity|GO:0004474|15272001|IMP  product MLS (MALATE SYNTHASE); malate synthase  note MALATE SYNTHASE (MLS); FUNCTIONS IN: malate synthase activity; INVOLVED IN: glyoxylate cycle; EXPRESSED IN: seed, leaf; CONTAINS InterPro DOMAIN/s: Malate synthase-like, core (InterPro:IPR011076), Malate synthase A (InterPro:IPR006252), Malate synthase (InterPro:IPR001465); Has 1895 Blast hits to 1895 proteins in 629 species: Archae - 15; Bacteria - 876; Metazoa - 45; Fungi - 210; Plants - 222; Viruses - 0; Other Eukaryotes - 527 (source: NCBI BLink).  protein_id AT5G03860.1p  transcript_id AT5G03860.1  protein_id AT5G03860.1p  transcript_id AT5G03860.1  
At5g03870	chr5:001035813	0.0	C/1035813-1036967	AT5G03870.1  CDS  gene_syn MED24.17, MED24_17  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  go_component cellular_component|GO:0005575||ND  product glutaredoxin family protein  note glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: N-terminal protein myristoylation, cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin family protein (TAIR:AT4G10630.1); Has 322 Blast hits to 320 proteins in 57 species: Archae - 0; Bacteria - 6; Metazoa - 97; Fungi - 2; Plants - 199; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT5G03870.1p  transcript_id AT5G03870.1  protein_id AT5G03870.1p  transcript_id AT5G03870.1  
At5g03880	chr5:001041143	0.0	C/1041143-1041453,1040934-1040998,1040703-1040775,1040568-1040586,1040191-1040310,1039771-1039840,1039591-1039634,1039461-1039502,1039176-1039235,1039026-1039093,1038849-1038906,1038674-1038763	AT5G03880.1  CDS  gene_syn MED24.18, MED24_18  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  product electron carrier  note electron carrier; FUNCTIONS IN: electron carrier activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin active site (InterPro:IPR011767), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: electron carrier/ protein disulfide oxidoreductase (TAIR:AT4G10000.2); Has 401 Blast hits to 305 proteins in 119 species: Archae - 48; Bacteria - 196; Metazoa - 1; Fungi - 33; Plants - 60; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT5G03880.1p  transcript_id AT5G03880.1  protein_id AT5G03880.1p  transcript_id AT5G03880.1  
At5g03890	chr5:001047150	0.0	W/1047150-1047689	AT5G03890.1  CDS  gene_syn F8F6.100  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G10120.1); Has 27 Blast hits to 27 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G03890.1p  transcript_id AT5G03890.1  protein_id AT5G03890.1p  transcript_id AT5G03890.1  
At5g03900	chr5:001048338	0.0	W/1048338-1048742,1048987-1049094,1049189-1049289,1049404-1049487,1049595-1049670,1049777-1049842,1050069-1050158,1050334-1050399,1050506-1050642,1050751-1050837,1050930-1050993,1051226-1051369,1051726-1051869	AT5G03900.2  CDS  gene_syn F8F6.110  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FeS cluster biogenesis (InterPro:IPR000361); Has 104 Blast hits to 104 proteins in 40 species: Archae - 0; Bacteria - 55; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G03900.2p  transcript_id AT5G03900.2  protein_id AT5G03900.2p  transcript_id AT5G03900.2  
At5g03900	chr5:001048338	0.0	W/1048338-1048742,1048987-1049094,1049189-1049289,1049404-1049487,1049595-1049670,1049777-1049842,1050069-1050158,1050334-1050399,1050506-1050642,1050751-1050837,1050930-1050999	AT5G03900.1  CDS  gene_syn F8F6.110  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FeS cluster biogenesis (InterPro:IPR000361); Has 98 Blast hits to 98 proteins in 40 species: Archae - 0; Bacteria - 53; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G03900.1p  transcript_id AT5G03900.1  protein_id AT5G03900.1p  transcript_id AT5G03900.1  
At5g03905	chr5:001052728	0.0	W/1052728-1052904,1053375-1053499,1053573-1053681,1053976-1054041	AT5G03905.1  CDS  go_process iron-sulfur cluster assembly|GO:0016226||IEA  go_function structural molecule activity|GO:0005198||IEA  go_function iron-sulfur cluster binding|GO:0051536||IEA  product hesB-like domain-containing protein  note hesB-like domain-containing protein; FUNCTIONS IN: iron-sulfur cluster binding, structural molecule activity; INVOLVED IN: iron-sulfur cluster assembly; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: FeS cluster biogenesis (InterPro:IPR000361), FeS cluster insertion (InterPro:IPR016092); BEST Arabidopsis thaliana protein match is: ATCPISCA (chloroplast-localized IscA-like protein); structural molecule (TAIR:AT1G10500.1); Has 7513 Blast hits to 7512 proteins in 1107 species: Archae - 25; Bacteria - 3484; Metazoa - 196; Fungi - 155; Plants - 93; Viruses - 0; Other Eukaryotes - 3560 (source: NCBI BLink).  protein_id AT5G03905.1p  transcript_id AT5G03905.1  protein_id AT5G03905.1p  transcript_id AT5G03905.1  
At5g03910	chr5:001056515	0.0	C/1056515-1057105,1056305-1056391,1056123-1056230,1055772-1056038,1055587-1055670,1055249-1055465,1055064-1055149,1054780-1054967,1054569-1054698,1054313-1054459	AT5G03910.1  CDS  gene_syn ATATH12, F8F6.120, F8F6_120  gene ATATH12  function member of ATH subfamily  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ATATH12; ATPase, coupled to transmembrane movement of substances / transporter  note ATATH12; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT3G28345.1); Has 252500 Blast hits to 228084 proteins in 2656 species: Archae - 4394; Bacteria - 167497; Metazoa - 8721; Fungi - 4905; Plants - 2567; Viruses - 30; Other Eukaryotes - 64386 (source: NCBI BLink).  protein_id AT5G03910.1p  transcript_id AT5G03910.1  protein_id AT5G03910.1p  transcript_id AT5G03910.1  
At5g03920	chr5:001058157	0.0	W/1058157-1058681	AT5G03920.1  CDS  gene_syn F8F6.130, F8F6_130  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G03930.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G03920.1p  transcript_id AT5G03920.1  protein_id AT5G03920.1p  transcript_id AT5G03920.1  
At5g03930	chr5:001059507	0.0	W/1059507-1060043	AT5G03930.1  CDS  gene_syn F8F6.140, F8F6_140  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G03920.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G03930.1p  transcript_id AT5G03930.1  protein_id AT5G03930.1p  transcript_id AT5G03930.1  
At5g03940	chr5:001063108	0.0	C/1063108-1063257,1062873-1063008,1062623-1062690,1062449-1062550,1062168-1062320,1062009-1062086,1061797-1061922,1061617-1061719,1061398-1061498,1061168-1061305,1060856-1061075,1060672-1060757,1060455-1060580,1060265-1060372	AT5G03940.1  CDS  gene_syn 54 CHLOROPLAST PROTEIN, 54CP, CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT, CPSRP54, F8F6.150, F8F6_150, FFC, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT, SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, SRP54CP  gene CPSRP54  function mutant has Yellow first leaves; Chloroplast Signal Recognition Particle Subunit  go_component chloroplast|GO:0009507|18431481|IDA  go_component signal recognition particle, endoplasmic reticulum targeting|GO:0005786||ISS  go_component chloroplast stroma|GO:0009570||IDA  go_component signal recognition particle, chloroplast targeting|GO:0080085|17513500|IMP  go_process SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition|GO:0006617||ISS  go_process protein import into chloroplast thylakoid membrane|GO:0045038||IDA  go_function mRNA binding|GO:0003729||ISS  go_function signal sequence binding|GO:0005048||IDA  go_function GTP binding|GO:0005525||ISS  go_function 7S RNA binding|GO:0008312||ISS  product CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT); 7S RNA binding / GTP binding / mRNA binding / signal sequence binding  note CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT (CPSRP54); FUNCTIONS IN: 7S RNA binding, mRNA binding, GTP binding, signal sequence binding; INVOLVED IN: protein import into chloroplast thylakoid membrane, SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition; LOCATED IN: chloroplast stroma, chloroplast, signal recognition particle, chloroplast targeting, signal recognition particle, endoplasmic reticulum targeting; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Signal recognition particle, SRP (InterPro:IPR004780), Signal recognition particle, SRP54 subunit, helical bundle (InterPro:IPR013822), Signal recognition particle, SRP54 subunit, M-domain (InterPro:IPR004125), Signal recognition particle, SRP54 subunit, GTPase (InterPro:IPR000897); BEST Arabidopsis thaliana protein match is: signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C) (TAIR:AT1G48900.1); Has 12301 Blast hits to 12297 proteins in 1590 species: Archae - 328; Bacteria - 5708; Metazoa - 259; Fungi - 194; Plants - 147; Viruses - 0; Other Eukaryotes - 5665 (source: NCBI BLink).  protein_id AT5G03940.1p  transcript_id AT5G03940.1  protein_id AT5G03940.1p  transcript_id AT5G03940.1  
At5g03944	chr5:001064611	0.0	C/1064611-1064808	AT5G03944.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G03944.1p  transcript_id AT5G03944.1  protein_id AT5G03944.1p  transcript_id AT5G03944.1  
At5g03950	chr5:001066206	0.0	W/1066206-1066964	AT5G03950.1  mRNA_TE_gene  pseudo  gene_syn F8F6.160, F8F6_160  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G40110.1)  
At5g03960	chr5:001069609	0.0	C/1069609-1069683,1068894-1069532,1068333-1068830	AT5G03960.1  CDS  gene_syn F8F6.170, F8F6_170, IQ-domain 12, IQD12  gene IQD12  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product IQD12 (IQ-domain 12); calmodulin binding  note IQ-domain 12 (IQD12); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: calmodulin binding (TAIR:AT1G76705.1); Has 376 Blast hits to 374 proteins in 20 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 2; Plants - 368; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G03960.1p  transcript_id AT5G03960.1  protein_id AT5G03960.1p  transcript_id AT5G03960.1  
At5g03970	chr5:001071721	0.0	C/1071721-1072941	AT5G03970.2  CDS  gene_syn F8F6.180, F8F6_180  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G07610.1); Has 196 Blast hits to 196 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 194; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G03970.2p  transcript_id AT5G03970.2  protein_id AT5G03970.2p  transcript_id AT5G03970.2  
At5g03970	chr5:001071721	0.0	C/1071721-1072977	AT5G03970.1  CDS  gene_syn F8F6.180, F8F6_180  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G07610.1); Has 196 Blast hits to 196 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 194; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G03970.1p  transcript_id AT5G03970.1  protein_id AT5G03970.1p  transcript_id AT5G03970.1  
At5g03980	chr5:001075146	0.0	C/1075146-1075289,1074205-1075032	AT5G03980.1  CDS  gene_syn F8F6.190, F8F6_190  go_component endomembrane system|GO:0012505||IEA  go_process glycerol biosynthetic process|GO:0006114||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: glycerol biosynthetic process, lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: lipase, putative (TAIR:AT1G28590.1); Has 1365 Blast hits to 1355 proteins in 65 species: Archae - 0; Bacteria - 38; Metazoa - 1; Fungi - 0; Plants - 1325; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G03980.1p  transcript_id AT5G03980.1  protein_id AT5G03980.1p  transcript_id AT5G03980.1  
At5g03990	chr5:001075957	0.0	W/1075957-1076059,1076553-1077358	AT5G03990.1  CDS  gene_syn F8F6.200, F8F6_200  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51940.1); Has 212 Blast hits to 160 proteins in 36 species: Archae - 0; Bacteria - 16; Metazoa - 16; Fungi - 22; Plants - 31; Viruses - 2; Other Eukaryotes - 125 (source: NCBI BLink).  protein_id AT5G03990.1p  transcript_id AT5G03990.1  protein_id AT5G03990.1p  transcript_id AT5G03990.1  
At5g03995	chr5:001078123	0.0	C/1078123-1078185,1077561-1077755	AT5G03995.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G03995.1p  transcript_id AT5G03995.1  protein_id AT5G03995.1p  transcript_id AT5G03995.1  
At5g04000	chr5:001079699	0.0	C/1079699-1079732,1079305-1079621	AT5G04000.1  CDS  gene_syn F8F6.210, F8F6_210  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, hypocotyl; Has 41 Blast hits to 41 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G04000.1p  transcript_id AT5G04000.1  protein_id AT5G04000.1p  transcript_id AT5G04000.1  
At5g04010	chr5:001080205	0.0	C/1080205-1081068	AT5G04010.1  CDS  gene_syn F8F6.220, F8F6_220  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G03920.1); Has 15 Blast hits to 15 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G04010.1p  transcript_id AT5G04010.1  protein_id AT5G04010.1p  transcript_id AT5G04010.1  
At5g04020	chr5:001086247	0.0	C/1086247-1086546,1081980-1086167	AT5G04020.1  CDS  gene_syn F8F6.230, F8F6_230  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516|11782485|IEP  go_function calmodulin binding|GO:0005516|11782485|TAS  product calmodulin binding  note calmodulin binding; FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Calmodulin-binding, plant (InterPro:IPR012417); BEST Arabidopsis thaliana protein match is: calmodulin-binding protein-related (TAIR:AT2G38800.1); Has 3773 Blast hits to 2797 proteins in 304 species: Archae - 14; Bacteria - 265; Metazoa - 1415; Fungi - 238; Plants - 248; Viruses - 14; Other Eukaryotes - 1579 (source: NCBI BLink).  protein_id AT5G04020.1p  transcript_id AT5G04020.1  protein_id AT5G04020.1p  transcript_id AT5G04020.1  
At5g04030	chr5:001088462	0.0	C/1088462-1088692	AT5G04030.1  CDS  gene_syn F8F6.240, F8F6_240  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G04030.1p  transcript_id AT5G04030.1  protein_id AT5G04030.1p  transcript_id AT5G04030.1  
At5g04040	chr5:001090346	0.0	W/1090346-1091767,1091851-1091994,1092092-1093003	AT5G04040.1  CDS  gene_syn F8F6.250, F8F6_250, SDP1, SUGAR-DEPENDENT1  gene SDP1  function Encodes a triacylglycerol lipase that is involved in storage lipid breakdown during seed germination. The mutant plant exhibits a much slower rate of postgerminative growth than the wild type.  go_component monolayer-surrounded lipid storage body|GO:0012511|16473965|IDA  go_process triglyceride catabolic process|GO:0019433|16473965|IMP  go_function triacylglycerol lipase activity|GO:0004806|16473965|IDA  product SDP1 (SUGAR-DEPENDENT1); triacylglycerol lipase  note SUGAR-DEPENDENT1 (SDP1); FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: triglyceride catabolic process; LOCATED IN: monolayer-surrounded lipid storage body; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), ARF/SAR superfamily (InterPro:IPR006689), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: patatin-related (TAIR:AT3G57140.2); Has 946 Blast hits to 919 proteins in 298 species: Archae - 0; Bacteria - 446; Metazoa - 42; Fungi - 251; Plants - 43; Viruses - 4; Other Eukaryotes - 160 (source: NCBI BLink).  protein_id AT5G04040.1p  transcript_id AT5G04040.1  protein_id AT5G04040.1p  transcript_id AT5G04040.1  
At5g04045	chr5:001093713	0.0	W/1093713-1093761,1093851-1094095	AT5G04045.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component membrane|GO:0016020|11152613|ISS  product Expressed protein  note Expressed protein; LOCATED IN: membrane; Has 5 Blast hits to 5 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 0; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G04045.1p  transcript_id AT5G04045.1  protein_id AT5G04045.1p  transcript_id AT5G04045.1  
At5g04047	chr5:001095436	0.0	C/1095436-1095684,1095146-1095343	AT5G04047.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: Expressed protein (TAIR:AT4G10895.1); Has 34 Blast hits to 34 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G04047.1p  transcript_id AT5G04047.1  protein_id AT5G04047.1p  transcript_id AT5G04047.1  
At5g04050	chr5:001096092	0.0	W/1096092-1097722,1097974-1098360,1098443-1098512	AT5G04050.2  CDS  gene_syn F8F6.260, F8F6_260  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: intron maturase, type II family protein (TAIR:AT1G74350.1).  protein_id AT5G04050.2p  transcript_id AT5G04050.2  protein_id AT5G04050.2p  transcript_id AT5G04050.2  
At5g04050	chr5:001096092	0.0	W/1096092-1097894	AT5G04050.1  CDS  gene_syn F8F6.260, F8F6_260  go_process RNA splicing|GO:0008380||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: RNA splicing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Intron maturase, type II (InterPro:IPR000442); BEST Arabidopsis thaliana protein match is: intron maturase, type II family protein (TAIR:AT1G74350.1); Has 2089 Blast hits to 2073 proteins in 800 species: Archae - 3; Bacteria - 1302; Metazoa - 5; Fungi - 34; Plants - 655; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT5G04050.1p  transcript_id AT5G04050.1  protein_id AT5G04050.1p  transcript_id AT5G04050.1  
At5g04060	chr5:001099271	0.0	W/1099271-1099445,1099695-1100109,1100233-1100522,1100618-1100995,1101068-1101314,1101397-1101535,1101652-1101810	AT5G04060.1  CDS  gene_syn F21E1.1  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  product dehydration-responsive protein-related  note dehydration-responsive protein-related; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive protein-related (TAIR:AT3G10200.1); Has 600 Blast hits to 593 proteins in 92 species: Archae - 0; Bacteria - 130; Metazoa - 3; Fungi - 4; Plants - 446; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT5G04060.1p  transcript_id AT5G04060.1  protein_id AT5G04060.1p  transcript_id AT5G04060.1  
At5g04070	chr5:001102238	0.0	W/1102238-1102432,1102520-1102586,1102718-1102746,1102849-1103057,1103135-1103253,1103352-1103447,1103537-1103612,1103819-1103972,1104058-1104192	AT5G04070.1  CDS  gene_syn F21E1.2  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: binding / catalytic/ oxidoreductase (TAIR:AT5G15940.1); Has 25318 Blast hits to 25292 proteins in 1623 species: Archae - 185; Bacteria - 13027; Metazoa - 3346; Fungi - 1626; Plants - 844; Viruses - 0; Other Eukaryotes - 6290 (source: NCBI BLink).  protein_id AT5G04070.1p  transcript_id AT5G04070.1  protein_id AT5G04070.1p  transcript_id AT5G04070.1  
At5g04080	chr5:001104815	0.0	W/1104815-1104848,1104926-1105037,1105141-1105186	AT5G04080.1  CDS  gene_syn F21E1.3  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; Has 77 Blast hits to 77 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G04080.1p  transcript_id AT5G04080.1  protein_id AT5G04080.1p  transcript_id AT5G04080.1  
At5g04090	chr5:001106879	0.0	C/1106879-1107092,1106165-1106593,1105923-1106009,1105672-1105736	AT5G04090.1  CDS  gene_syn F21E1.10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G10250.2); Has 76 Blast hits to 76 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G04090.1p  transcript_id AT5G04090.1  protein_id AT5G04090.1p  transcript_id AT5G04090.1  
At5g04090	chr5:001107582	0.0	C/1107582-1107629,1107276-1107381,1106879-1107061,1106165-1106593,1105923-1106009,1105672-1105736	AT5G04090.2  CDS  gene_syn F21E1.10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G10250.2); Has 131 Blast hits to 129 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 118; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT5G04090.2p  transcript_id AT5G04090.2  protein_id AT5G04090.2p  transcript_id AT5G04090.2  
At5g04110	chr5:001114062	0.0	C/1114062-1114112,1113831-1113938,1113591-1113661,1113340-1113481,1112902-1113000,1112650-1112775,1112409-1112523,1111905-1111972,1110757-1111617	AT5G04110.1  CDS  gene_syn AT5G04100, F21E1.30, F21E1_30  go_component chromosome|GO:0005694||IEA  go_process DNA topological change|GO:0006265||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA topoisomerase (ATP-hydrolyzing) activity|GO:0003918||IEA  go_function ATP binding|GO:0005524||IEA  go_process DNA metabolic process|GO:0006259||ISS  go_process DNA topological change|GO:0006265||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA topoisomerase (ATP-hydrolyzing) activity|GO:0003918||ISS  go_function ATP binding|GO:0005524||ISS  product DNA topoisomerase II family protein  note DNA topoisomerase II family protein; FUNCTIONS IN: DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, ATP binding; INVOLVED IN: DNA topological change, DNA metabolic process; LOCATED IN: chromosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), ELM2 (InterPro:IPR000949), DNA topoisomerase, type IIA, subunit B, region 2 (InterPro:IPR013506), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721), DNA topoisomerase, type IIA, subunit B (InterPro:IPR000565), DNA topoisomerase, type IIA, subunit B or N-terminal (InterPro:IPR001241); BEST Arabidopsis thaliana protein match is: DNA topoisomerase, ATP-hydrolyzing, putative / DNA topoisomerase II, putative / DNA gyrase, putative (TAIR:AT5G04130.1); Has 14579 Blast hits to 14524 proteins in 3942 species: Archae - 71; Bacteria - 10964; Metazoa - 79; Fungi - 22; Plants - 107; Viruses - 6; Other Eukaryotes - 3330 (source: NCBI BLink).  protein_id AT5G04110.1p  transcript_id AT5G04110.1  protein_id AT5G04110.1p  transcript_id AT5G04110.1  
At5g04120	chr5:001120091	0.0	W/1120091-1120104,1120480-1120597,1120711-1120761,1120869-1120979,1121067-1121198,1121315-1121605	AT5G04120.1  CDS  gene_syn F21E1.40, F21E1_40  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function catalytic activity|GO:0003824||ISS  product phosphoglycerate/bisphosphoglycerate mutase family protein  note phosphoglycerate/bisphosphoglycerate mutase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078), Phosphoglycerate/bisphosphoglycerate mutase (InterPro:IPR001345); BEST Arabidopsis thaliana protein match is: phosphoglycerate/bisphosphoglycerate mutase family protein (TAIR:AT3G50520.1); Has 8851 Blast hits to 8694 proteins in 1334 species: Archae - 50; Bacteria - 5552; Metazoa - 723; Fungi - 290; Plants - 143; Viruses - 0; Other Eukaryotes - 2093 (source: NCBI BLink).  protein_id AT5G04120.1p  transcript_id AT5G04120.1  protein_id AT5G04120.1p  transcript_id AT5G04120.1  
At5g04130	chr5:001127880	0.0	C/1127880-1128031,1127350-1127488,1127179-1127259,1126980-1127093,1126754-1126810,1126505-1126606,1126080-1126230,1125913-1125989,1125642-1125752,1125222-1125292,1124815-1124956,1124351-1124449,1124091-1124219,1123729-1123863	AT5G04130.2  CDS  gene_syn F21E1.50, F21E1_50  go_process DNA topological change|GO:0006265||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA topoisomerase (ATP-hydrolyzing) activity|GO:0003918||IEA  go_function ATP binding|GO:0005524||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process DNA metabolic process|GO:0006259||ISS  go_process DNA topological change|GO:0006265||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA topoisomerase (ATP-hydrolyzing) activity|GO:0003918||ISS  go_function ATP binding|GO:0005524||ISS  product DNA topoisomerase, ATP-hydrolyzing, putative / DNA topoisomerase II, putative / DNA gyrase, putative  note DNA topoisomerase, ATP-hydrolyzing, putative / DNA topoisomerase II, putative / DNA gyrase, putative; FUNCTIONS IN: DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, ATP binding; INVOLVED IN: DNA topological change, DNA metabolic process; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: DNA topoisomerase, type IIA, subunit B, region 2 (InterPro:IPR013506), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721), ATP-binding region, ATPase-like (InterPro:IPR003594), DNA topoisomerase, type IIA, subunit B (InterPro:IPR000565), DNA topoisomerase, type IIA, subunit B or N-terminal (InterPro:IPR001241); BEST Arabidopsis thaliana protein match is: ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) (TAIR:AT3G10270.1); Has 18490 Blast hits to 18465 proteins in 4333 species: Archae - 73; Bacteria - 11852; Metazoa - 148; Fungi - 174; Plants - 62; Viruses - 51; Other Eukaryotes - 6130 (source: NCBI BLink).  protein_id AT5G04130.2p  transcript_id AT5G04130.2  protein_id AT5G04130.2p  transcript_id AT5G04130.2  
At5g04130	chr5:001127880	0.0	C/1127880-1128031,1127350-1127488,1127179-1127259,1126980-1127093,1126754-1126810,1126505-1126606,1126080-1126230,1125913-1125989,1125642-1125752,1125222-1125292,1124815-1124956,1124351-1124449,1124091-1124219,1123749-1123863,1123472-1123539,1123094-1123207,1122881-1122997,1122739-1122792,1122549-1122654,1122263-1122393,1122084-1122152	AT5G04130.1  CDS  gene_syn F21E1.50, F21E1_50  go_process DNA topological change|GO:0006265||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA topoisomerase (ATP-hydrolyzing) activity|GO:0003918||IEA  go_function ATP binding|GO:0005524||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process DNA metabolic process|GO:0006259||ISS  go_process DNA topological change|GO:0006265||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA topoisomerase (ATP-hydrolyzing) activity|GO:0003918||ISS  go_function ATP binding|GO:0005524||ISS  product DNA topoisomerase, ATP-hydrolyzing, putative / DNA topoisomerase II, putative / DNA gyrase, putative  note DNA topoisomerase, ATP-hydrolyzing, putative / DNA topoisomerase II, putative / DNA gyrase, putative; FUNCTIONS IN: DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, ATP binding; INVOLVED IN: DNA topological change, DNA metabolic process; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: DNA topoisomerase, type IIA, conserved site (InterPro:IPR018522), DNA topoisomerase, type IIA, subunit B, region 2 (InterPro:IPR013506), DNA topoisomerase, type IIA, subunit B (InterPro:IPR000565), ATP-binding region, ATPase-like (InterPro:IPR003594), DNA topoisomerase, type IIA, subunit B, C-terminal (InterPro:IPR002288), DNA topoisomerase, type IIA, subunit B or N-terminal (InterPro:IPR001241), DNA topoisomerase, type IIA, subunit B or N-terminal, alpha-beta (InterPro:IPR013759), TOPRIM (InterPro:IPR006171), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721), DNA topoisomerase, type IIA, central (InterPro:IPR013760); BEST Arabidopsis thaliana protein match is: ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) (TAIR:AT3G10270.1); Has 23506 Blast hits to 21729 proteins in 4482 species: Archae - 75; Bacteria - 14076; Metazoa - 167; Fungi - 179; Plants - 62; Viruses - 72; Other Eukaryotes - 8875 (source: NCBI BLink).  protein_id AT5G04130.1p  transcript_id AT5G04130.1  protein_id AT5G04130.1p  transcript_id AT5G04130.1  
At5g04140	chr5:001130031	0.0	W/1130031-1130306,1130385-1130697,1130774-1131216,1131310-1131441,1131534-1131632,1131715-1131785,1132013-1132109,1132444-1132536,1132656-1132801,1132891-1133050,1133127-1133237,1133327-1133542,1133640-1133797,1133935-1134064,1134193-1134251,1134326-1134431,1134517-1134613,1134705-1134820,1134895-1135092,1135180-1135290,1135384-1135623,1135700-1135798,1135913-1136008,1136097-1136294,1136398-1136472,1136554-1136682,1136775-1136873,1136952-1137094,1137186-1137279,1137370-1137608,1137696-1137774,1137850-1137933,1138025-1138186	AT5G04140.1  CDS  gene_syn F21E1.60, F21E1_60, FD-GOGAT, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, GLS1, GLU1, GLUS, GLUTAMATE SYNTHASE, GLUTAMATE SYNTHASE 1  gene GLU1  function Encodes a gene whose sequence is similar to ferredoxin dependent glutamate synthase (Fd-GOGAT). Expression in leaves is induced by light and sucrose. Proposed to be involved in photorespiration and nitrogen assimilation.  go_component mitochondrion|GO:0005739|19223513|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|19223513|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process photorespiration|GO:0009853|19223513|IMP  go_process positive regulation of glycine hydroxymethyltransferase activity|GO:0080114|19223513|IDA  go_function glutamate synthase (ferredoxin) activity|GO:0016041|19223513|IDA  go_process response to light stimulus|GO:0009416|16034598|IEP  go_process photorespiration|GO:0009853|9596633|TAS  go_function glutamate synthase (ferredoxin) activity|GO:0016041|9596633|ISS  product GLU1 (GLUTAMATE SYNTHASE 1); glutamate synthase (ferredoxin)  note GLUTAMATE SYNTHASE 1 (GLU1); FUNCTIONS IN: glutamate synthase (ferredoxin) activity; INVOLVED IN: positive regulation of glycine hydroxymethyltransferase activity, response to light stimulus, photorespiration; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase, class-II (InterPro:IPR000583), Aldolase-type TIM barrel (InterPro:IPR013785), Glutamate synthase, alpha subunit, C-terminal (InterPro:IPR002489), Glutamate synthase, central-N (InterPro:IPR006982), Glutamate synthase, central-C (InterPro:IPR002932), Glutamine amidotransferase, type II (InterPro:IPR017932); BEST Arabidopsis thaliana protein match is: GLU2 (GLUTAMATE SYNTHASE 2); glutamate synthase (ferredoxin) (TAIR:AT2G41220.1); Has 14683 Blast hits to 14616 proteins in 1131 species: Archae - 173; Bacteria - 3231; Metazoa - 94; Fungi - 99; Plants - 97; Viruses - 0; Other Eukaryotes - 10989 (source: NCBI BLink).  protein_id AT5G04140.1p  transcript_id AT5G04140.1  protein_id AT5G04140.1p  transcript_id AT5G04140.1  
At5g04140	chr5:001130031	0.0	W/1130031-1130697,1130774-1131216,1131310-1131441,1131534-1131632,1131715-1131785,1132013-1132109,1132444-1132536,1132656-1132801,1132891-1133050,1133127-1133237,1133327-1133542,1133640-1133797,1133935-1134064,1134193-1134251,1134326-1134431,1134517-1134613,1134705-1134820,1134895-1135092,1135180-1135290,1135384-1135623,1135700-1135798,1135913-1136008,1136097-1136294,1136398-1136472,1136554-1136682,1136775-1136873,1136952-1137094,1137186-1137279,1137370-1137608,1137696-1137774,1137850-1137933,1138025-1138186	AT5G04140.2  CDS  gene_syn F21E1.60, F21E1_60, FD-GOGAT, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, GLS1, GLU1, GLUS, GLUTAMATE SYNTHASE, GLUTAMATE SYNTHASE 1  gene GLU1  function Encodes a gene whose sequence is similar to ferredoxin dependent glutamate synthase (Fd-GOGAT). Expression in leaves is induced by light and sucrose. Proposed to be involved in photorespiration and nitrogen assimilation.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to light stimulus|GO:0009416|16034598|IEP  go_process photorespiration|GO:0009853|9596633|TAS  go_function glutamate synthase (ferredoxin) activity|GO:0016041|9596633|ISS  product GLU1 (GLUTAMATE SYNTHASE 1); glutamate synthase (ferredoxin)  note GLUTAMATE SYNTHASE 1 (GLU1); FUNCTIONS IN: glutamate synthase (ferredoxin) activity; INVOLVED IN: response to light stimulus, photorespiration; LOCATED IN: apoplast, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase, class-II (InterPro:IPR000583), Aldolase-type TIM barrel (InterPro:IPR013785), Glutamate synthase, alpha subunit, C-terminal (InterPro:IPR002489), Glutamate synthase, central-N (InterPro:IPR006982), Glutamate synthase, central-C (InterPro:IPR002932), Glutamine amidotransferase, type II (InterPro:IPR017932); BEST Arabidopsis thaliana protein match is: GLU2 (GLUTAMATE SYNTHASE 2); glutamate synthase (ferredoxin) (TAIR:AT2G41220.1); Has 14683 Blast hits to 14616 proteins in 1131 species: Archae - 173; Bacteria - 3231; Metazoa - 94; Fungi - 99; Plants - 97; Viruses - 0; Other Eukaryotes - 10989 (source: NCBI BLink).  protein_id AT5G04140.2p  transcript_id AT5G04140.2  protein_id AT5G04140.2p  transcript_id AT5G04140.2  
At5g04150	chr5:001139183	0.0	C/1139183-1139476,1138726-1139082,1138559-1138630	AT5G04150.1  CDS  gene_syn BHLH101, F21E1.70, F21E1_70  gene BHLH101  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product BHLH101; DNA binding / transcription factor  note BHLH101; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BHLH038; DNA binding / transcription factor (TAIR:AT3G56970.1); Has 328 Blast hits to 327 proteins in 132 species: Archae - 0; Bacteria - 2; Metazoa - 115; Fungi - 2; Plants - 180; Viruses - 9; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT5G04150.1p  transcript_id AT5G04150.1  protein_id AT5G04150.1p  transcript_id AT5G04150.1  
At5g04160	chr5:001144328	0.0	C/1144328-1144777,1143755-1143858,1143271-1143499,1143033-1143179	AT5G04160.1  CDS  gene_syn F21E1.80, F21E1_80  go_component endomembrane system|GO:0012505||IEA  go_function organic anion transmembrane transporter activity|GO:0008514||ISS  product phosphate translocator-related  note phosphate translocator-related; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: phosphate translocator-related (TAIR:AT3G10290.1); Has 1922 Blast hits to 1920 proteins in 210 species: Archae - 4; Bacteria - 52; Metazoa - 605; Fungi - 290; Plants - 738; Viruses - 0; Other Eukaryotes - 233 (source: NCBI BLink).  protein_id AT5G04160.1p  transcript_id AT5G04160.1  protein_id AT5G04160.1p  transcript_id AT5G04160.1  
At5g04170	chr5:001145579	0.0	W/1145579-1146296,1146658-1146704,1146807-1146982,1147066-1147084,1147415-1147519	AT5G04170.1  CDS  gene_syn F21E1.90, F21E1_90  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT3G10300.3); Has 32062 Blast hits to 17618 proteins in 833 species: Archae - 4; Bacteria - 3047; Metazoa - 14595; Fungi - 4725; Plants - 3524; Viruses - 254; Other Eukaryotes - 5913 (source: NCBI BLink).  protein_id AT5G04170.1p  transcript_id AT5G04170.1  protein_id AT5G04170.1p  transcript_id AT5G04170.1  
At5g04180	chr5:001149180	0.0	C/1149180-1149237,1148717-1149047,1148519-1148621,1148256-1148423,1148117-1148170,1147907-1148026	AT5G04180.1  CDS  gene_syn ACA3, ALPHA CARBONIC ANHYDRASE 3, ATACA3, F21E1.100, F21E1_100  gene ACA3  go_component endomembrane system|GO:0012505||IEA  go_function carbonate dehydratase activity|GO:0004089||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process one-carbon compound metabolic process|GO:0006730||ISS  go_process response to carbon dioxide|GO:0010037|17407539|IEP  go_function carbonate dehydratase activity|GO:0004089||ISS  go_function zinc ion binding|GO:0008270||ISS  product ACA3 (ALPHA CARBONIC ANHYDRASE 3); carbonate dehydratase/ zinc ion binding  note ALPHA CARBONIC ANHYDRASE 3 (ACA3); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: response to carbon dioxide, one-carbon compound metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, alpha-class, catalytic domain (InterPro:IPR001148), Carbonic anhydrase, CAH1-like (InterPro:IPR018340); BEST Arabidopsis thaliana protein match is: ACA4 (ALPHA CARBONIC ANHYDRASE 4); carbonate dehydratase/ zinc ion binding (TAIR:AT4G20990.1); Has 2429 Blast hits to 2419 proteins in 314 species: Archae - 0; Bacteria - 343; Metazoa - 1747; Fungi - 52; Plants - 158; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).  protein_id AT5G04180.1p  transcript_id AT5G04180.1  protein_id AT5G04180.1p  transcript_id AT5G04180.1  
At5g04190	chr5:001151114	0.0	W/1151114-1152334	AT5G04190.1  CDS  gene_syn F21E1.110, F21E1_110, PKS4, phytochrome kinase substrate 4  gene PKS4  function Encodes phytochrome kinase substrate 4, a phytochrome signaling component involved in phototropism.  go_component cellular_component|GO:0005575||ND  go_process phototropism|GO:0009638|16777956|IGI  go_process red or far red light signaling pathway|GO:0010017|18390804|IMP  go_function molecular_function|GO:0003674||ND  product PKS4 (phytochrome kinase substrate 4)  note phytochrome kinase substrate 4 (PKS4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: phototropism, red or far red light signaling pathway; LOCATED IN: cellular_component unknown; Has 74 Blast hits to 68 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 4; Plants - 51; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT5G04190.1p  transcript_id AT5G04190.1  protein_id AT5G04190.1p  transcript_id AT5G04190.1  
At5g04200	chr5:001153893	0.0	W/1153893-1154870	AT5G04200.1  CDS  gene_syn AtMC9, F21E1.120, F21E1_120, metacaspase 9  gene AtMC9  go_process proteolysis|GO:0006508||IEA  go_component apoplast|GO:0048046|17028019|IDA  go_function cysteine-type peptidase activity|GO:0008234|15326173|IDA  go_function cysteine-type peptidase activity|GO:0008234|17110382|IDA  product AtMC9 (metacaspase 9); cysteine-type peptidase  note metacaspase 9 (AtMC9); FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: apoplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: AtMC6 (metacaspase 6); cysteine-type endopeptidase (TAIR:AT1G79320.1); Has 738 Blast hits to 725 proteins in 191 species: Archae - 4; Bacteria - 185; Metazoa - 0; Fungi - 198; Plants - 188; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).  protein_id AT5G04200.1p  transcript_id AT5G04200.1  protein_id AT5G04200.1p  transcript_id AT5G04200.1  
At5g04210	chr5:001155579	0.0	C/1155579-1155724,1155055-1155490	AT5G04210.1  CDS  gene_syn F21E1.130, F21E1_130  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT2G29580.1); Has 281 Blast hits to 281 proteins in 103 species: Archae - 0; Bacteria - 0; Metazoa - 124; Fungi - 69; Plants - 69; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT5G04210.1p  transcript_id AT5G04210.1  protein_id AT5G04210.1p  transcript_id AT5G04210.1  
At5g04220	chr5:001157352	0.0	C/1157352-1157366,1157189-1157265,1156848-1157097,1156409-1156765,1156199-1156327,1155985-1156113	AT5G04220.1  CDS  gene_syn ATSYTC, F21E1.140, F21E1_140, NTMC2T1.3, NTMC2TYPE1.3, SYTC  gene SYTC  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SYTC  note SYTC; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: SYTA (SYNAPTOTAGMIN A) (TAIR:AT2G20990.1); Has 6730 Blast hits to 4776 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 4628; Fungi - 614; Plants - 976; Viruses - 0; Other Eukaryotes - 512 (source: NCBI BLink).  protein_id AT5G04220.1p  transcript_id AT5G04220.1  protein_id AT5G04220.1p  transcript_id AT5G04220.1  
At5g04220	chr5:001158510	0.0	C/1158510-1158620,1158183-1158281,1157912-1158086,1157712-1157830,1157532-1157633,1157378-1157452,1157189-1157265,1156848-1157097,1156409-1156765,1156199-1156327,1155985-1156113	AT5G04220.2  CDS  gene_syn ATSYTC, F21E1.140, F21E1_140, NTMC2T1.3, NTMC2TYPE1.3, SYTC  gene SYTC  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SYTC  note SYTC; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: SYTA (SYNAPTOTAGMIN A) (TAIR:AT2G20990.1); Has 6874 Blast hits to 4860 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 4660; Fungi - 676; Plants - 1011; Viruses - 0; Other Eukaryotes - 527 (source: NCBI BLink).  protein_id AT5G04220.2p  transcript_id AT5G04220.2  protein_id AT5G04220.2p  transcript_id AT5G04220.2  
At5g04230	chr5:001160831	0.0	W/1160831-1161189,1161879-1162532,1162636-1163707	AT5G04230.1  CDS  gene_syn F21E1.150, F21E1_150, PAL3, PHENYL ALANINE AMMONIA-LYASE 3  gene PAL3  function Member of Phenylalanine ammonialyase (PAL) gene family.Differs significantly from PAL1 and PAL2 and other sequenced plant PAL genes  go_component cytoplasm|GO:0005737||IEA  go_process defense response|GO:0006952|7888622|TAS  go_process response to wounding|GO:0009611|7888622|TAS  go_function phenylalanine ammonia-lyase activity|GO:0045548|7888622|ISS  product PAL3 (PHENYL ALANINE AMMONIA-LYASE 3); phenylalanine ammonia-lyase  note PHENYL ALANINE AMMONIA-LYASE 3 (PAL3); FUNCTIONS IN: phenylalanine ammonia-lyase activity; INVOLVED IN: response to wounding, defense response; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phenylalanine/histidine ammonia-lyase (InterPro:IPR001106), L-Aspartase-like (InterPro:IPR008948), Phenylalanine ammonia-lyase (InterPro:IPR005922); BEST Arabidopsis thaliana protein match is: PAL4 (Phenylalanine ammonia-lyase 4); ammonia ligase/ ammonia-lyase/ catalytic (TAIR:AT3G10340.1); Has 3124 Blast hits to 3117 proteins in 832 species: Archae - 21; Bacteria - 1676; Metazoa - 68; Fungi - 91; Plants - 780; Viruses - 0; Other Eukaryotes - 488 (source: NCBI BLink).  protein_id AT5G04230.1p  transcript_id AT5G04230.1  protein_id AT5G04230.1p  transcript_id AT5G04230.1  
At5g04235	chr5:001164287	0.0	C/1164287-1168411	AT5G04235.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 6.2e-38 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)  
At5g04238	chr5:001169217	0.0	C/1169217-1169411	AT5G04238.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G04238.1p  transcript_id AT5G04238.1  protein_id AT5G04238.1p  transcript_id AT5G04238.1  
At5g04240	chr5:001169544	0.0	W/1169544-1170600,1170926-1171004,1171128-1171195,1171502-1171652,1171743-1172254,1172339-1172503,1172648-1174638	AT5G04240.1  CDS  gene_syn EARLY FLOWERING 6, ELF6, F21E1.160, F21E1_160  gene ELF6  function Early Flowering 6 (ELF6) encodes a Jumonji N/C and zinc finger domain-containing protein that acts as a repressor in the photoperiod pathway. ELF6 interacts with BES1 in a Y2H assay, in vitro, and in Arabidosis protoplasts (based on BiFC). ELF6 may play a role in brassinosteroid signaling by affecting histone methylation in the promoters of BR-responsive genes.  go_component nucleus|GO:0005634|18467490|IDA  go_process response to brassinosteroid stimulus|GO:0009741|18467490|IMP  go_process unidimensional cell growth|GO:0009826|18467490|IMP  go_process histone H3-K9 demethylation|GO:0033169|18467490|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process negative regulation of short-day photoperiodism, flowering|GO:0048577|15377760|IMP  go_process negative regulation of long-day photoperiodism, flowering|GO:0048579|15377760|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product ELF6 (EARLY FLOWERING 6); transcription factor  note EARLY FLOWERING 6 (ELF6); FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, C2H2-like (InterPro:IPR015880), Transcription factor jumonji (InterPro:IPR013129), Zinc finger, C2H2-type (InterPro:IPR007087), Transcription factor jumonji, JmjN (InterPro:IPR003349), Zinc finger, C2H2-type/integrase, DNA-binding (InterPro:IPR013087); BEST Arabidopsis thaliana protein match is: REF6 (RELATIVE OF EARLY FLOWERING 6); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT3G48430.1); Has 95910 Blast hits to 31129 proteins in 802 species: Archae - 0; Bacteria - 59; Metazoa - 91048; Fungi - 1715; Plants - 304; Viruses - 7; Other Eukaryotes - 2777 (source: NCBI BLink).  protein_id AT5G04240.1p  transcript_id AT5G04240.1  protein_id AT5G04240.1p  transcript_id AT5G04240.1  
At5g04250	chr5:001176397	0.0	W/1176397-1176697,1176792-1177009,1177102-1177175,1177467-1177521,1177622-1177696,1177795-1177868,1177964-1178012,1178135-1178219,1178304-1178360,1178443-1178492	AT5G04250.1  CDS  gene_syn T19N18.9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function cysteine-type peptidase activity|GO:0008234||ISS  product OTU-like cysteine protease family protein  note OTU-like cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: OTU-like cysteine protease family protein (TAIR:AT5G03330.2); Has 638 Blast hits to 628 proteins in 124 species: Archae - 0; Bacteria - 2; Metazoa - 316; Fungi - 70; Plants - 138; Viruses - 8; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT5G04250.1p  transcript_id AT5G04250.1  protein_id AT5G04250.1p  transcript_id AT5G04250.1  
At5g04250	chr5:001176397	0.0	W/1176397-1176697,1176792-1177009,1177102-1177175,1177467-1177521,1177622-1177696,1177795-1177868,1177964-1178012,1178135-1178219,1178304-1178360,1178443-1178492	AT5G04250.2  CDS  gene_syn T19N18.9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function cysteine-type peptidase activity|GO:0008234||ISS  product OTU-like cysteine protease family protein  note OTU-like cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: OTU-like cysteine protease family protein (TAIR:AT5G03330.2); Has 638 Blast hits to 628 proteins in 124 species: Archae - 0; Bacteria - 2; Metazoa - 316; Fungi - 70; Plants - 138; Viruses - 8; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT5G04250.2p  transcript_id AT5G04250.2  protein_id AT5G04250.2p  transcript_id AT5G04250.2  
At5g04260	chr5:001179709	0.0	C/1179709-1180022,1179374-1179448,1179207-1179273,1179089-1179106,1178901-1179005	AT5G04260.1  CDS  gene_syn T19N18.5, WCRKC THIOREDOXIN 2, WCRKC2  gene WCRKC2  function Encodes a thioredoxin (WCRKC2) localized in chloroplast stroma. Contains a WCRKC motif.  go_component chloroplast thylakoid|GO:0009534|19259774|IDA  go_component chloroplast stroma|GO:0009570|19259774|IDA  go_process cell redox homeostasis|GO:0045454||IEA  product WCRKC2 (WCRKC THIOREDOXIN 2)  note WCRKC THIOREDOXIN 2 (WCRKC2); INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast stroma, chloroplast thylakoid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336), Thioredoxin, conserved site (InterPro:IPR017937); BEST Arabidopsis thaliana protein match is: WCRKC1 (WCRKC THIOREDOXIN 1) (TAIR:AT5G06690.1); Has 2499 Blast hits to 2499 proteins in 657 species: Archae - 45; Bacteria - 1088; Metazoa - 154; Fungi - 192; Plants - 290; Viruses - 0; Other Eukaryotes - 730 (source: NCBI BLink).  protein_id AT5G04260.1p  transcript_id AT5G04260.1  protein_id AT5G04260.1p  transcript_id AT5G04260.1  
At5g04267	chr5:001182163	0.0	C/1182163-1182294	AT5G04267.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G04267.1p  transcript_id AT5G04267.1  protein_id AT5G04267.1p  transcript_id AT5G04267.1  
At5g04270	chr5:001184509	0.0	C/1184509-1184718,1183967-1184059,1183770-1183871,1183615-1183686,1183281-1183379,1183097-1183192,1182896-1182988	AT5G04270.1  CDS  gene_syn T19N18.6  go_component endomembrane system|GO:0012505||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: zinc finger (DHHC type) family protein (TAIR:AT3G09320.1); Has 3947 Blast hits to 3944 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 1934; Fungi - 520; Plants - 397; Viruses - 0; Other Eukaryotes - 1096 (source: NCBI BLink).  protein_id AT5G04270.1p  transcript_id AT5G04270.1  protein_id AT5G04270.1p  transcript_id AT5G04270.1  
At5g04275	chr5:001188211	0.0	C/1188211-1188299	AT5G04275.1  miRNA  gene_syn MICRORNA 172, MICRORNA 172B, MIR172, MIR172B  gene MIR172B  function Encodes a microRNA that targets several genes containing AP2 domains including AP2. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: AGAAUCUUGAUGAUGCUGCAU  go_component cellular_component|GO:0005575||ND  go_process flower development|GO:0009908|17573799|IMP  go_process meristem determinacy|GO:0010022|17573799|IMP  go_process gene silencing by miRNA|GO:0035195|15200956|TAS  go_function molecular_function|GO:0003674||ND  product MIR172B (MICRORNA 172B); miRNA  transcript_id AT5G04275.1  
At5g04280	chr5:001192461	0.0	W/1192461-1192571,1194495-1195033,1195131-1195413	AT5G04280.1  CDS  gene_syn T19N18.10, T19N18_10  go_component nucleolus|GO:0005730|15496452|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product glycine-rich RNA-binding protein  note glycine-rich RNA-binding protein; FUNCTIONS IN: RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: glycine-rich RNA-binding protein, putative (TAIR:AT1G60650.2); Has 24420 Blast hits to 18586 proteins in 789 species: Archae - 10; Bacteria - 1605; Metazoa - 14101; Fungi - 2458; Plants - 3834; Viruses - 39; Other Eukaryotes - 2373 (source: NCBI BLink).  protein_id AT5G04280.1p  transcript_id AT5G04280.1  protein_id AT5G04280.1p  transcript_id AT5G04280.1  
At5g04290	chr5:001196069	0.0	W/1196069-1196282,1196598-1196845,1196937-1197092,1197212-1197370,1197462-1197545,1197667-1197734,1197814-1198221,1198307-1198361,1198428-1198583,1198700-1198843,1198927-1199029,1199105-1199254,1199333-1199387,1199512-1199576,1199730-1199799,1200023-1200073,1200163-1200202,1200319-1201446,1201526-1202653	AT5G04290.1  CDS  gene_syn KOW DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1, KTF1, T19N18.20, T19N18_20  gene KTF1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product KTF1 (KOW DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1); nucleotide binding  note KOW DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1 (KTF1); FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: KOW (InterPro:IPR005824); BEST Arabidopsis thaliana protein match is: GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2); structural constituent of ribosome / transcription elongation regulator/ transcription factor (TAIR:AT4G08350.1); Has 121722 Blast hits to 32066 proteins in 1776 species: Archae - 340; Bacteria - 25103; Metazoa - 44767; Fungi - 9133; Plants - 12328; Viruses - 1370; Other Eukaryotes - 28681 (source: NCBI BLink).  protein_id AT5G04290.1p  transcript_id AT5G04290.1  protein_id AT5G04290.1p  transcript_id AT5G04290.1  
At5g04310	chr5:001207168	0.0	C/1207168-1207352,1206228-1206935,1205883-1206099,1205242-1205447,1203356-1203596	AT5G04310.1  CDS  gene_syn T19N18.40, T19N18_40  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function pectate lyase activity|GO:0030570||ISS  product pectate lyase family protein  note pectate lyase family protein; FUNCTIONS IN: pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: PMR6 (powdery mildew resistant 6); lyase/ pectate lyase (TAIR:AT3G54920.1); Has 988 Blast hits to 985 proteins in 173 species: Archae - 0; Bacteria - 411; Metazoa - 0; Fungi - 170; Plants - 396; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT5G04310.1p  transcript_id AT5G04310.1  protein_id AT5G04310.1p  transcript_id AT5G04310.1  
At5g04320	chr5:001209613	0.0	W/1209613-1209669,1209746-1209835,1209923-1209960,1210061-1210169,1210278-1210301,1210405-1210470,1210557-1210598,1210698-1210794,1210869-1210935,1211025-1211201,1211320-1211424,1211528-1211632,1211738-1211815,1211924-1212019,1212115-1212376	AT5G04320.2  CDS  gene_syn T19N18.50, T19N18_50  go_component chromosome, centromeric region|GO:0000775||IEA  go_component nucleus|GO:0005634||IEA  go_process meiotic chromosome segregation|GO:0045132||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: meiotic chromosome segregation; LOCATED IN: chromosome, centromeric region, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Shugoshin, C-terminal (InterPro:IPR011515); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G10440.1); Has 2357 Blast hits to 1923 proteins in 223 species: Archae - 0; Bacteria - 124; Metazoa - 1266; Fungi - 112; Plants - 71; Viruses - 4; Other Eukaryotes - 780 (source: NCBI BLink).  protein_id AT5G04320.2p  transcript_id AT5G04320.2  protein_id AT5G04320.2p  transcript_id AT5G04320.2  
At5g04320	chr5:001209929	0.0	W/1209929-1209960,1210061-1210169,1210278-1210301,1210405-1210470,1210557-1210598,1210698-1210794,1210869-1210935,1211025-1211201,1211320-1211424,1211528-1211632,1211738-1211815,1211924-1212019,1212115-1212376	AT5G04320.1  CDS  gene_syn T19N18.50, T19N18_50  go_component chromosome, centromeric region|GO:0000775||IEA  go_component nucleus|GO:0005634||IEA  go_process meiotic chromosome segregation|GO:0045132||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: meiotic chromosome segregation; LOCATED IN: chromosome, centromeric region, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Shugoshin, C-terminal (InterPro:IPR011515); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G10440.1); Has 951 Blast hits to 743 proteins in 147 species: Archae - 0; Bacteria - 61; Metazoa - 474; Fungi - 60; Plants - 48; Viruses - 0; Other Eukaryotes - 308 (source: NCBI BLink).  protein_id AT5G04320.1p  transcript_id AT5G04320.1  protein_id AT5G04320.1p  transcript_id AT5G04320.1  
At5g04330	chr5:001213405	0.0	C/1213405-1214310,1212695-1213327	AT5G04330.1  CDS  gene_syn T19N18.60, T19N18_60  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product cytochrome P450, putative / ferulate-5-hydroxylase, putative  note cytochrome P450, putative / ferulate-5-hydroxylase, putative; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973); BEST Arabidopsis thaliana protein match is: FAH1 (FERULIC ACID 5-HYDROXYLASE 1); ferulate 5-hydroxylase/ monooxygenase (TAIR:AT4G36220.1); Has 24489 Blast hits to 24321 proteins in 1314 species: Archae - 46; Bacteria - 2523; Metazoa - 10502; Fungi - 4560; Plants - 5728; Viruses - 6; Other Eukaryotes - 1124 (source: NCBI BLink).  protein_id AT5G04330.1p  transcript_id AT5G04330.1  protein_id AT5G04330.1p  transcript_id AT5G04330.1  
At5g04340	chr5:001216321	0.0	C/1216321-1217037	AT5G04340.1  CDS  gene_syn C2H2, C2H2 ZINC FINGER TRANSCRIPTION FACTOR, COLD INDUCED ZINC FINGER PROTEIN 2, CZF2, T19N18.70, T19N18_70, ZAT6, ZINC FINGER OF ARABIDOPSIS THALIANA 6  gene ZAT6  function putative c2h2 zinc finger transcription factor mRNA,  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product ZAT6 (ZINC FINGER OF ARABIDOPSIS THALIANA 6); nucleic acid binding / transcription factor/ zinc ion binding  note ZINC FINGER OF ARABIDOPSIS THALIANA 6 (ZAT6); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: STZ (salt tolerance zinc finger); nucleic acid binding / transcription factor/ transcription repressor/ zinc ion binding (TAIR:AT1G27730.1); Has 2124 Blast hits to 1723 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 1538; Fungi - 4; Plants - 540; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT5G04340.1p  transcript_id AT5G04340.1  protein_id AT5G04340.1p  transcript_id AT5G04340.1  
At5g04347	chr5:001219877	0.0	W/1219877-1220269	AT5G04347.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: self-incompatibility protein-related (TAIR:AT5G04350.1); Has 81 Blast hits to 81 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G04347.1p  transcript_id AT5G04347.1  protein_id AT5G04347.1p  transcript_id AT5G04347.1  
At5g04350	chr5:001220829	0.0	W/1220829-1221269	AT5G04350.1  CDS  gene_syn T19N18.80, T19N18_80  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product self-incompatibility protein-related  note self-incompatibility protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04347.1); Has 111 Blast hits to 110 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 111; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G04350.1p  transcript_id AT5G04350.1  protein_id AT5G04350.1p  transcript_id AT5G04350.1  
At5g04360	chr5:001221566	0.0	W/1221566-1221805,1221897-1222038,1222112-1222164,1222262-1222370,1222520-1222656,1222747-1222946,1223037-1223186,1223476-1223536,1223713-1223833,1224065-1224155,1224234-1224327,1224510-1224605,1224704-1224844,1225036-1225086,1225235-1225305,1225422-1225514,1225648-1225738,1226054-1226125,1226371-1226427,1226514-1226582,1226677-1226733,1226946-1227020,1227162-1227250,1227335-1227412,1227517-1227655,1227872-1227981,1228072-1228171,1228289-1228399	AT5G04360.1  CDS  gene_syn ATLDA, ATPU1, LIMIT DEXTRINASE, PU1, PULLULANASE, PULLULANASE 1, T19N18.90, T19N18_90  gene ATLDA  function Encodes an enzyme thought to be involved in the hydrolysis of the & 945;-1,6 linkages during starch degradation in seed endosperm. However, a knockout mutant of Arabidopsis lacking limit dextrinase has normal rates of starch degradation in the leaf at night, indicating that more than one isoamylases might be involved in this process.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_process starch catabolic process|GO:0005983|15862090|TAS  go_process starch catabolic process|GO:0005983|18815382|IMP  go_process starch biosynthetic process|GO:0019252|18815382|IMP  go_function alpha-amylase activity|GO:0004556||ISS  go_function limit dextrinase activity|GO:0010303|15849301|IDA  go_function pullulanase activity|GO:0051060|18815382|IDA  product ATLDA (LIMIT DEXTRINASE); alpha-amylase/ limit dextrinase/ pullulanase  note LIMIT DEXTRINASE (ATLDA); FUNCTIONS IN: limit dextrinase activity, pullulanase activity, alpha-amylase activity; INVOLVED IN: starch biosynthetic process, carbohydrate metabolic process, starch catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-1,6-glucosidases, pullulanase-type (InterPro:IPR011839), Immunoglobulin E-set (InterPro:IPR014756), Glycoside hydrolase, family 13, N-terminal (InterPro:IPR004193), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic region (InterPro:IPR006047); BEST Arabidopsis thaliana protein match is: ISA3 (ISOAMYLASE 3); alpha-amylase/ isoamylase (TAIR:AT4G09020.1); Has 3780 Blast hits to 3779 proteins in 911 species: Archae - 39; Bacteria - 3120; Metazoa - 44; Fungi - 0; Plants - 165; Viruses - 0; Other Eukaryotes - 412 (source: NCBI BLink).  protein_id AT5G04360.1p  transcript_id AT5G04360.1  protein_id AT5G04360.1p  transcript_id AT5G04360.1  
At5g04370	chr5:001231856	0.0	W/1231856-1231950,1232175-1232307,1232613-1233008,1233116-1233373,1233523-1233888	AT5G04370.2  CDS  gene_syn NAMT1, T19N18.100, T19N18_100  gene NAMT1  function A member of the Arabidopsis SABATH methyltransferase gene family. Encodes NAMT1, a methyltransferase that methylates nicotinic acid.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757||IDA  product NAMT1; S-adenosylmethionine-dependent methyltransferase  note NAMT1; FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: BSMT1; S-adenosylmethionine-dependent methyltransferase (TAIR:AT3G11480.1); Has 638 Blast hits to 627 proteins in 99 species: Archae - 0; Bacteria - 50; Metazoa - 12; Fungi - 3; Plants - 451; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT5G04370.2p  transcript_id AT5G04370.2  protein_id AT5G04370.2p  transcript_id AT5G04370.2  
At5g04370	chr5:001232027	0.0	W/1232027-1232064,1232175-1232307,1232613-1233008,1233116-1233373,1233523-1233888	AT5G04370.1  CDS  gene_syn NAMT1, T19N18.100, T19N18_100  gene NAMT1  function A member of the Arabidopsis SABATH methyltransferase gene family. Encodes NAMT1, a methyltransferase that methylates nicotinic acid.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757||IDA  product NAMT1; S-adenosylmethionine-dependent methyltransferase  note NAMT1; FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: BSMT1; S-adenosylmethionine-dependent methyltransferase (TAIR:AT3G11480.1); Has 638 Blast hits to 627 proteins in 99 species: Archae - 0; Bacteria - 50; Metazoa - 12; Fungi - 3; Plants - 451; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT5G04370.1p  transcript_id AT5G04370.1  protein_id AT5G04370.1p  transcript_id AT5G04370.1  
At5g04380	chr5:001234883	0.0	W/1234883-1235032,1235132-1235524,1235617-1235874,1235961-1236317	AT5G04380.1  CDS  gene_syn T19N18.110, T19N18_110  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  product S-adenosyl-L-methionine:carboxyl methyltransferase family protein  note S-adenosyl-L-methionine:carboxyl methyltransferase family protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, cultured cell; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: NAMT1; S-adenosylmethionine-dependent methyltransferase (TAIR:AT5G04370.2); Has 598 Blast hits to 587 proteins in 94 species: Archae - 0; Bacteria - 42; Metazoa - 8; Fungi - 3; Plants - 450; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT5G04380.1p  transcript_id AT5G04380.1  protein_id AT5G04380.1p  transcript_id AT5G04380.1  
At5g04386	chr5:001238103	0.0	W/1238103-1238219	AT5G04386.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G04386.1p  transcript_id AT5G04386.1  protein_id AT5G04386.1p  transcript_id AT5G04386.1  
At5g04390	chr5:001239166	0.0	W/1239166-1240254	AT5G04390.1  CDS  gene_syn T19N18.120, T19N18_120  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT3G10470.1); Has 995 Blast hits to 947 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 481; Fungi - 0; Plants - 484; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT5G04390.1p  transcript_id AT5G04390.1  protein_id AT5G04390.1p  transcript_id AT5G04390.1  
At5g04400	chr5:001241555	0.0	W/1241555-1241821,1242077-1242340,1242578-1242934,1243059-1243358	AT5G04400.1  CDS  gene_syn Arabidopsis NAC domain containing protein 77, T19N18.130, T19N18_130, anac077  gene anac077  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  product anac077 (Arabidopsis NAC domain containing protein 77); DNA binding  note Arabidopsis NAC domain containing protein 77 (anac077); FUNCTIONS IN: DNA binding; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot, flower, leaf; EXPRESSED DURING: petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac052 (Arabidopsis NAC domain containing protein 52); transcription factor (TAIR:AT3G10490.2); Has 1424 Blast hits to 1413 proteins in 58 species: Archae - 0; Bacteria - 4; Metazoa - 4; Fungi - 0; Plants - 1411; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G04400.1p  transcript_id AT5G04400.1  protein_id AT5G04400.1p  transcript_id AT5G04400.1  
At5g04410	chr5:001243980	0.0	W/1243980-1244145,1244262-1244539,1244658-1244849,1245188-1245751,1245829-1245946,1246031-1246416	AT5G04410.1  CDS  gene_syn Arabidopsis NAC domain containing protein 78, NAC2, T19N18.11, anac078  gene NAC2  function NAC family member, hypothetical transcriptional regulator  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product NAC2; transcription factor  note NAC2; FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac053 (Arabidopsis NAC domain containing protein 53); transcription factor (TAIR:AT3G10500.1); Has 1635 Blast hits to 1630 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1633; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G04410.1p  transcript_id AT5G04410.1  protein_id AT5G04410.1p  transcript_id AT5G04410.1  
At5g04420	chr5:001249345	0.0	C/1249345-1249455,1249174-1249251,1248956-1249087,1248811-1248877,1248672-1248733,1248446-1248585,1248204-1248330,1248013-1248127,1247817-1247905,1247653-1247736,1247253-1247573,1247115-1247174,1246867-1247025	AT5G04420.1  CDS  gene_syn T19N18.4  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing protein  note kelch repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: ACBP4 (ACYL-COA BINDING PROTEIN 4); acyl-CoA binding (TAIR:AT3G05420.2); Has 6285 Blast hits to 3115 proteins in 246 species: Archae - 9; Bacteria - 164; Metazoa - 2930; Fungi - 737; Plants - 825; Viruses - 10; Other Eukaryotes - 1610 (source: NCBI BLink).  protein_id AT5G04420.1p  transcript_id AT5G04420.1  protein_id AT5G04420.1p  transcript_id AT5G04420.1  
At5g04420	chr5:001249345	0.0	C/1249345-1249455,1249174-1249251,1248956-1249087,1248811-1248877,1248672-1248733,1248446-1248585,1248204-1248330,1248013-1248127,1247817-1247905,1247653-1247736,1247253-1247573,1247115-1247174,1246867-1247025	AT5G04420.2  CDS  gene_syn T19N18.4  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing protein  note kelch repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: ACBP4 (ACYL-COA BINDING PROTEIN 4); acyl-CoA binding (TAIR:AT3G05420.2); Has 6285 Blast hits to 3115 proteins in 246 species: Archae - 9; Bacteria - 164; Metazoa - 2930; Fungi - 737; Plants - 825; Viruses - 10; Other Eukaryotes - 1610 (source: NCBI BLink).  protein_id AT5G04420.2p  transcript_id AT5G04420.2  protein_id AT5G04420.2p  transcript_id AT5G04420.2  
At5g04420	chr5:001249345	0.0	C/1249345-1249455,1249174-1249251,1248956-1249087,1248811-1248877,1248672-1248733,1248446-1248585,1248204-1248330,1248013-1248127,1247817-1247905,1247653-1247736,1247253-1247573,1247115-1247174,1246867-1247025	AT5G04420.3  CDS  gene_syn T19N18.4  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing protein  note kelch repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: ACBP4 (ACYL-COA BINDING PROTEIN 4); acyl-CoA binding (TAIR:AT3G05420.2); Has 6285 Blast hits to 3115 proteins in 246 species: Archae - 9; Bacteria - 164; Metazoa - 2930; Fungi - 737; Plants - 825; Viruses - 10; Other Eukaryotes - 1610 (source: NCBI BLink).  protein_id AT5G04420.3p  transcript_id AT5G04420.3  protein_id AT5G04420.3p  transcript_id AT5G04420.3  
At5g04430	chr5:001253439	0.0	C/1253439-1253523,1252896-1253134,1252684-1252790,1252065-1252258,1251440-1251501,1250919-1251014,1250788-1250849,1250602-1250698	AT5G04430.1  CDS  gene_syn BINDING TO TOMV RNA 1, BINDING TO TOMV RNA 1L (LONG FORM), BINDING TO TOMV RNA 1S (SHORT FORM), BTR1, BTR1L, BTR1S, T19N18.7  gene BTR1L  function Gene model AT5G04430.1 produces active protein. (BTS1S). Binds to ToMV genomic RNA and prevents viral multiplication.  go_process regulation of viral protein levels in host cell|GO:0046719|18762309|IMP  go_function single-stranded RNA binding|GO:0003727|18762309|IPI  go_component cellular_component|GO:0005575||ND  go_process RNA splicing|GO:0008380|16807317|NAS  go_function nucleic acid binding|GO:0003676||ISS  product BTR1L (BINDING TO TOMV RNA 1L (LONG FORM)); nucleic acid binding / single-stranded RNA binding  note BINDING TO TOMV RNA 1S (SHORT FORM) (BTR1S); FUNCTIONS IN: single-stranded RNA binding, nucleic acid binding; INVOLVED IN: RNA splicing, regulation of viral protein levels in host cell; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT4G10070.1); Has 4831 Blast hits to 2014 proteins in 157 species: Archae - 0; Bacteria - 6; Metazoa - 3806; Fungi - 354; Plants - 460; Viruses - 0; Other Eukaryotes - 205 (source: NCBI BLink).  protein_id AT5G04430.1p  transcript_id AT5G04430.1  protein_id AT5G04430.1p  transcript_id AT5G04430.1  
At5g04430	chr5:001253439	0.0	C/1253439-1253523,1252896-1253134,1252684-1252790,1252065-1252258,1251440-1251564,1250919-1251014,1250788-1250849,1250602-1250698	AT5G04430.2  CDS  gene_syn BINDING TO TOMV RNA 1, BINDING TO TOMV RNA 1L (LONG FORM), BINDING TO TOMV RNA 1S (SHORT FORM), BTR1, BTR1L, BTR1S, T19N18.7  gene BTR1L  function Gene model AT5G04430.1 produces active protein. (BTS1S). Binds to ToMV genomic RNA and prevents viral multiplication.  go_component cellular_component|GO:0005575||ND  go_process RNA splicing|GO:0008380|16807317|NAS  go_function nucleic acid binding|GO:0003676||ISS  product BTR1L (BINDING TO TOMV RNA 1L (LONG FORM)); nucleic acid binding  note BINDING TO TOMV RNA 1L (LONG FORM) (BTR1L); FUNCTIONS IN: nucleic acid binding; INVOLVED IN: RNA splicing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA binding / nucleic acid binding (TAIR:AT1G33680.1); Has 4447 Blast hits to 2021 proteins in 156 species: Archae - 0; Bacteria - 4; Metazoa - 3500; Fungi - 333; Plants - 414; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink).  protein_id AT5G04430.2p  transcript_id AT5G04430.2  protein_id AT5G04430.2p  transcript_id AT5G04430.2  
At5g04440	chr5:001254957	0.0	W/1254957-1255215,1255323-1255513,1255656-1255701,1255842-1255924,1256009-1256125,1256553-1256624	AT5G04440.1  CDS  gene_syn T19N18.1  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31115.2); Has 213 Blast hits to 213 proteins in 56 species: Archae - 0; Bacteria - 98; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT5G04440.1p  transcript_id AT5G04440.1  protein_id AT5G04440.1p  transcript_id AT5G04440.1  
At5g04460	chr5:001260009	0.0	W/1260009-1261196,1261548-1261666,1262017-1262604,1262714-1263023,1263143-1263308,1263396-1263498,1263578-1263695	AT5G04460.1  CDS  gene_syn T19N18.3  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G27950.1); Has 3065 Blast hits to 2869 proteins in 225 species: Archae - 0; Bacteria - 67; Metazoa - 1979; Fungi - 103; Plants - 302; Viruses - 32; Other Eukaryotes - 582 (source: NCBI BLink).  protein_id AT5G04460.1p  transcript_id AT5G04460.1  protein_id AT5G04460.1p  transcript_id AT5G04460.1  
At5g04470	chr5:001266893	0.0	C/1266893-1267276	AT5G04470.1  CDS  gene_syn SIAMESE, SIM, T19N18.8  gene SIM  function Encodes a novel nuclear 14-kD protein containing a cyclin binding motif and a motif found in ICK/KRP cell cycle inhibitor proteins. It is required for coordinating cell division and cell differentiation during the development of Arabidopsis trichomes, playing a key role in the mitosis-to-endoreduplication transition. It interacts with D-type cyclins in vivo.  go_component nucleus|GO:0005634|17098811|IDA  go_process trichome differentiation|GO:0010026|10952891|IMP  go_process DNA endoreduplication|GO:0042023|10952891|IMP  go_process negative regulation of cyclin-dependent protein kinase activity|GO:0045736|17098811|NAS  go_process negative regulation of mitosis|GO:0045839|17098811|IMP  go_function cyclin-dependent protein kinase inhibitor activity|GO:0004861|17098811|NAS  product SIM (SIAMESE); cyclin-dependent protein kinase inhibitor  note SIAMESE (SIM); FUNCTIONS IN: cyclin-dependent protein kinase inhibitor activity; INVOLVED IN: trichome differentiation, negative regulation of cyclin-dependent protein kinase activity, negative regulation of mitosis, DNA endoreduplication; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G10525.1); Has 16 Blast hits to 16 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G04470.1p  transcript_id AT5G04470.1  protein_id AT5G04470.1p  transcript_id AT5G04470.1  
At5g04480	chr5:001277284	0.0	C/1277284-1277793,1276295-1276381,1275997-1276100,1275808-1275858,1275460-1275631,1275047-1275367,1274475-1274678,1273891-1274397,1273561-1273770,1273270-1273458,1272914-1273086,1272527-1272679,1272365-1272446,1271886-1272275	AT5G04480.1  CDS  gene_syn T32M21.80, T32M21_80  go_process biosynthetic process|GO:0009058||IEA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biosynthetic process; LOCATED IN: Golgi apparatus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: transferase, transferring glycosyl groups (TAIR:AT4G01210.1); Has 241 Blast hits to 238 proteins in 81 species: Archae - 4; Bacteria - 156; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT5G04480.1p  transcript_id AT5G04480.1  protein_id AT5G04480.1p  transcript_id AT5G04480.1  
At5g04490	chr5:001279867	0.0	W/1279867-1280163,1280576-1280643,1280734-1280865,1280950-1281065,1281164-1281278,1281401-1281587	AT5G04490.1  CDS  gene_syn T32M21.90, T32M21_90, VTE5, vitamin E pathway gene5  gene VTE5  function Encodes a protein with phytol kinase activity involved in tocopherol biosynthesis.  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020||ISS  go_process phospholipid biosynthetic process|GO:0008654||ISS  go_process vitamin E biosynthetic process|GO:0010189|16361393|IMP  go_function phosphatidate cytidylyltransferase activity|GO:0004605||ISS  go_function phytol kinase activity|GO:0010276|16361393|IDA  product VTE5 (vitamin E pathway gene5); phosphatidate cytidylyltransferase/ phytol kinase  note vitamin E pathway gene5 (VTE5); FUNCTIONS IN: phytol kinase activity, phosphatidate cytidylyltransferase activity; INVOLVED IN: vitamin E biosynthetic process, phospholipid biosynthetic process; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidate cytidylyltransferase (InterPro:IPR000374); BEST Arabidopsis thaliana protein match is: phosphatidate cytidylyltransferase family protein (TAIR:AT5G58560.1); Has 501 Blast hits to 501 proteins in 152 species: Archae - 45; Bacteria - 203; Metazoa - 0; Fungi - 38; Plants - 70; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink).  protein_id AT5G04490.1p  transcript_id AT5G04490.1  protein_id AT5G04490.1p  transcript_id AT5G04490.1  
At5g04500	chr5:001283604	0.0	W/1283604-1283921,1284021-1284143,1284227-1284394,1284467-1286155	AT5G04500.1  CDS  gene_syn T32M21.100, T32M21_100  function a member of the Glycosyltransferase Family 64 (according to CAZy Database)  go_component intrinsic to endoplasmic reticulum membrane|GO:0031227||IEA  go_process biological_process|GO:0008150||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyltransferase family protein 47  note glycosyltransferase family protein 47; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: intrinsic to endoplasmic reticulum membrane; EXPRESSED IN: sperm cell, leaf whorl, embryo, flower; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: EXTL2, alpha-1,4-N-acetylhexosaminyltransferase (InterPro:IPR015338); BEST Arabidopsis thaliana protein match is: EPC1 (ECTOPICALLY PARTING CELLS); UDP-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT3G55830.1); Has 732 Blast hits to 732 proteins in 114 species: Archae - 2; Bacteria - 91; Metazoa - 424; Fungi - 2; Plants - 48; Viruses - 0; Other Eukaryotes - 165 (source: NCBI BLink).  protein_id AT5G04500.1p  transcript_id AT5G04500.1  protein_id AT5G04500.1p  transcript_id AT5G04500.1  
At5g04510	chr5:001287235	0.0	W/1287235-1287405,1287543-1287723,1287816-1287868,1287955-1288056,1288133-1288241,1288355-1288433,1288532-1288697,1288772-1288906,1289001-1289173,1289290-1289512,1289598-1289681	AT5G04510.1  CDS  gene_syn 3 -PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1, 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1, ATPDK1, PDK1, T32M21.110, T32M21_110  gene PDK1  function Encodes 3-phosphoinositide-dependent protein kinase that contains pleckstrin homology domain and binds 3-phosphoinositides. It activates the protein kinase AGC2-1 in a phosphatidic acid dependent manner. Phosphorylates S6K1. Interacts with PID, and transphosphorylation by PDK1 increases PID autophosphorylation.  go_component cellular_component|GO:0005575||ND  go_process positive regulation of protein kinase activity|GO:0045860|14749726|IDA  go_function protein kinase activity|GO:0004672|16377759|IDA  go_function 3-phosphoinositide-dependent protein kinase activity|GO:0004676|10371193|IGI  go_function protein binding|GO:0005515|14749726|IPI  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  go_function phosphoinositide binding|GO:0035091|10371193|IDA  product PDK1 (3 -PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1); 3-phosphoinositide-dependent protein kinase/ kinase/ phosphoinositide binding / protein binding / protein kinase  note 3 -PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 (PDK1); FUNCTIONS IN: 3-phosphoinositide-dependent protein kinase activity, protein binding, phosphoinositide binding, protein kinase activity, kinase activity; INVOLVED IN: positive regulation of protein kinase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein Kinase-1, 3-phosphoinositide dependent (InterPro:IPR015746), Protein kinase, core (InterPro:IPR000719), Pleckstrin homology-type (InterPro:IPR011993); BEST Arabidopsis thaliana protein match is: 3-phosphoinositide-dependent protein kinase, putative (TAIR:AT3G10540.1); Has 94474 Blast hits to 92960 proteins in 3320 species: Archae - 79; Bacteria - 8730; Metazoa - 40702; Fungi - 8756; Plants - 17444; Viruses - 590; Other Eukaryotes - 18173 (source: NCBI BLink).  protein_id AT5G04510.1p  transcript_id AT5G04510.1  protein_id AT5G04510.1p  transcript_id AT5G04510.1  
At5g04510	chr5:001287235	0.0	W/1287235-1287405,1287543-1287723,1287816-1287868,1287955-1288056,1288133-1288241,1288355-1288433,1288532-1288697,1288772-1288906,1289001-1289231	AT5G04510.2  CDS  gene_syn 3 -PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1, 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1, ATPDK1, PDK1, T32M21.110, T32M21_110  gene PDK1  function Encodes 3-phosphoinositide-dependent protein kinase that contains pleckstrin homology domain and binds 3-phosphoinositides. It activates the protein kinase AGC2-1 in a phosphatidic acid dependent manner. Phosphorylates S6K1. Interacts with PID, and transphosphorylation by PDK1 increases PID autophosphorylation.  go_component cellular_component|GO:0005575||ND  go_process positive regulation of protein kinase activity|GO:0045860|14749726|IDA  go_function protein kinase activity|GO:0004672|16377759|IDA  go_function 3-phosphoinositide-dependent protein kinase activity|GO:0004676|10371193|IGI  go_function protein binding|GO:0005515|14749726|IPI  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  go_function phosphoinositide binding|GO:0035091|10371193|IDA  product PDK1 (3 -PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1); 3-phosphoinositide-dependent protein kinase/ kinase/ phosphoinositide binding / protein binding / protein kinase  note 3 -PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 (PDK1); FUNCTIONS IN: 3-phosphoinositide-dependent protein kinase activity, protein binding, phosphoinositide binding, protein kinase activity, kinase activity; INVOLVED IN: positive regulation of protein kinase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein Kinase-1, 3-phosphoinositide dependent (InterPro:IPR015746), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: 3-phosphoinositide-dependent protein kinase, putative (TAIR:AT3G10540.1); Has 94455 Blast hits to 92946 proteins in 3320 species: Archae - 79; Bacteria - 8730; Metazoa - 40695; Fungi - 8754; Plants - 17443; Viruses - 590; Other Eukaryotes - 18164 (source: NCBI BLink).  protein_id AT5G04510.2p  transcript_id AT5G04510.2  protein_id AT5G04510.2p  transcript_id AT5G04510.2  
At5g04520	chr5:001290770	0.0	C/1290770-1291063,1290439-1290669,1290012-1290362	AT5G04520.1  CDS  gene_syn T32M21.120, T32M21_120  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF455 (InterPro:IPR007402), Protein of unknown function UCP012318 (InterPro:IPR011197); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06240.1); Has 613 Blast hits to 611 proteins in 261 species: Archae - 0; Bacteria - 413; Metazoa - 12; Fungi - 30; Plants - 36; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT5G04520.1p  transcript_id AT5G04520.1  protein_id AT5G04520.1p  transcript_id AT5G04520.1  
At5g04530	chr5:001292222	0.0	C/1292222-1293616	AT5G04530.1  CDS  gene_syn 3-KETOACYL-COA SYNTHASE 19, KCS19, T32M21.130, T32M21_130  gene KCS19  function Encodes KCS19, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_function catalytic activity|GO:0003824||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_process response to osmotic stress|GO:0006970|18465198|IEP  go_process response to cold|GO:0009409|18465198|IEP  go_process response to light stimulus|GO:0009416|18465198|IEP  go_function acyltransferase activity|GO:0008415||ISS  product KCS19 (3-KETOACYL-COA SYNTHASE 19); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups  note 3-KETOACYL-COA SYNTHASE 19 (KCS19); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: response to light stimulus, response to cold, response to osmotic stress; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038), Chalcone and stilbene synthases, C-terminal (InterPro:IPR012328); BEST Arabidopsis thaliana protein match is: KCS12 (3-KETOACYL-COA SYNTHASE 12); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups (TAIR:AT2G28630.1); Has 1343 Blast hits to 1338 proteins in 309 species: Archae - 0; Bacteria - 400; Metazoa - 0; Fungi - 2; Plants - 831; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT5G04530.1p  transcript_id AT5G04530.1  protein_id AT5G04530.1p  transcript_id AT5G04530.1  
At5g04540	chr5:001302192	0.0	C/1302192-1302299,1301934-1302002,1301611-1301685,1301422-1301493,1301261-1301330,1300959-1301008,1300583-1300872,1300331-1300404,1300178-1300241,1299988-1300053,1299562-1299661,1299363-1299476,1298850-1299019,1298640-1298724,1298198-1298416,1298027-1298086,1297883-1297947,1297416-1297695,1296826-1297296	AT5G04540.1  CDS  gene_syn T32M21.150, T32M21_150  go_process dephosphorylation|GO:0016311||IEA  go_function protein tyrosine phosphatase activity|GO:0004725||IEA  go_function phosphatase activity|GO:0016791||IEA  product phosphatase/ protein tyrosine phosphatase  note phosphatase/ protein tyrosine phosphatase; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity; INVOLVED IN: dephosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Myotubularin phosphatase (InterPro:IPR017906), GRAM (InterPro:IPR004182), Myotubularin-related (InterPro:IPR010569); BEST Arabidopsis thaliana protein match is: phosphatase/ protein tyrosine phosphatase (TAIR:AT3G10550.1); Has 1412 Blast hits to 1291 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 1099; Fungi - 91; Plants - 18; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink).  protein_id AT5G04540.1p  transcript_id AT5G04540.1  protein_id AT5G04540.1p  transcript_id AT5G04540.1  
At5g04550	chr5:001303757	0.0	C/1303757-1305556	AT5G04550.1  CDS  gene_syn T32M21.140, T32M21_140  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF668 (InterPro:IPR007700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23160.1); Has 214 Blast hits to 133 proteins in 13 species: Archae - 0; Bacteria - 1; Metazoa - 2; Fungi - 0; Plants - 211; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G04550.1p  transcript_id AT5G04550.1  protein_id AT5G04550.1p  transcript_id AT5G04550.1  
At5g04560	chr5:001309786	0.0	W/1309786-1310356,1310468-1312588,1312687-1313031,1313265-1313355,1313426-1314812,1314905-1314984,1315088-1315172,1315256-1315347,1315421-1315489,1315609-1315645,1315743-1315825,1316079-1316522,1316785-1316821,1316907-1316964,1317163-1317302,1317390-1317455,1317547-1317661,1317795-1317833,1317988-1318091	AT5G04560.2  CDS  gene_syn AT5G04570, AT5G04580, DEMETER, DME, T32M21.160, T32M21_160  gene DME  function Encodes a DNA glycosylase DEMETER (DME). Responsible for endosperm maternal-allele-specific hypomethylation at the MEDEA (MEA) gene. DME can excise 5-methylcytosine in vitro and when expressed in E. coli. DME establishes MEA imprinting by removing 5-methylcytosine to activate the maternal allele.  go_component nucleus|GO:0005634|12150995|ISS  go_component polar nucleus|GO:0043078|12150995|IDA  go_process DNA methylation|GO:0006306|16624880|IDA  go_process genetic imprinting|GO:0006349|16469697|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|12150995|IMP  go_function DNA-(apurinic or apyrimidinic site) lyase activity|GO:0003906|16624880|IDA  go_function DNA N-glycosylase activity|GO:0019104|12150995|ISS  go_function DNA N-glycosylase activity|GO:0019104|16624880|IDA  product DME (DEMETER); DNA N-glycosylase/ DNA-(apurinic or apyrimidinic site) lyase  note DEMETER (DME); FUNCTIONS IN: DNA N-glycosylase activity, DNA-(apurinic or apyrimidinic site) lyase activity; INVOLVED IN: embryonic development ending in seed dormancy, genetic imprinting, DNA methylation; LOCATED IN: nucleus, polar nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Endonuclease III-like, iron-sulphur cluster loop (InterPro:IPR003651), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: DML1 (DEMETER-LIKE 1); DNA N-glycosylase/ DNA-(apurinic or apyrimidinic site) lyase/ protein binding (TAIR:AT2G36490.1); Has 2246 Blast hits to 2130 proteins in 681 species: Archae - 137; Bacteria - 1082; Metazoa - 250; Fungi - 79; Plants - 209; Viruses - 0; Other Eukaryotes - 489 (source: NCBI BLink).  protein_id AT5G04560.2p  transcript_id AT5G04560.2  protein_id AT5G04560.2p  transcript_id AT5G04560.2  
At5g04560	chr5:001310671	0.0	W/1310671-1312588,1312687-1313031,1313265-1313355,1313426-1314812,1314905-1314984,1315088-1315172,1315256-1315347,1315421-1315489,1315609-1315645,1315743-1315825,1316079-1316522,1316785-1316821,1316907-1316964,1317163-1317302,1317390-1317455,1317547-1317661,1317795-1317833,1317988-1318091	AT5G04560.1  CDS  gene_syn AT5G04570, AT5G04580, DEMETER, DME, T32M21.160, T32M21_160  gene DME  function Encodes a DNA glycosylase DEMETER (DME). Responsible for endosperm maternal-allele-specific hypomethylation at the MEDEA (MEA) gene. DME can excise 5-methylcytosine in vitro and when expressed in E. coli. DME establishes MEA imprinting by removing 5-methylcytosine to activate the maternal allele.  go_component nucleus|GO:0005634|12150995|ISS  go_component polar nucleus|GO:0043078|12150995|IDA  go_process DNA methylation|GO:0006306|16624880|IDA  go_process genetic imprinting|GO:0006349|16469697|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|12150995|IMP  go_function DNA-(apurinic or apyrimidinic site) lyase activity|GO:0003906|16624880|IDA  go_function DNA N-glycosylase activity|GO:0019104|12150995|ISS  go_function DNA N-glycosylase activity|GO:0019104|16624880|IDA  product DME (DEMETER); DNA N-glycosylase/ DNA-(apurinic or apyrimidinic site) lyase  note DEMETER (DME); FUNCTIONS IN: DNA N-glycosylase activity, DNA-(apurinic or apyrimidinic site) lyase activity; INVOLVED IN: embryonic development ending in seed dormancy, genetic imprinting, DNA methylation; LOCATED IN: nucleus, polar nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Endonuclease III-like, iron-sulphur cluster loop (InterPro:IPR003651), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: DML1 (DEMETER-LIKE 1); DNA N-glycosylase/ DNA-(apurinic or apyrimidinic site) lyase/ protein binding (TAIR:AT2G36490.1); Has 2108 Blast hits to 1993 proteins in 667 species: Archae - 137; Bacteria - 1080; Metazoa - 176; Fungi - 58; Plants - 205; Viruses - 0; Other Eukaryotes - 452 (source: NCBI BLink).  protein_id AT5G04560.1p  transcript_id AT5G04560.1  protein_id AT5G04560.1p  transcript_id AT5G04560.1  
At5g04590	chr5:001319404	0.0	W/1319404-1319595,1319948-1320724,1320864-1321160,1321257-1321454,1321541-1321675,1321759-1321875,1321969-1322127,1322245-1322298	AT5G04590.1  CDS  gene_syn SIR, SULFITE REDUCTASE, T1E3.2  gene SIR  function A.thaliana gene encoding sulfite reductase.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component plastid|GO:0009536|9661674|TAS  go_component stromule|GO:0010319|16923014|IDA  go_process response to cold|GO:0009409|16923014|IEP  go_process sulfate reduction|GO:0019419||TAS  go_function sulfite reductase activity|GO:0016002|9661674|IDA  go_function sulfite reductase (ferredoxin) activity|GO:0050311||ISS  product SIR; sulfite reductase (ferredoxin)/ sulfite reductase  note SIR; FUNCTIONS IN: sulfite reductase activity, sulfite reductase (ferredoxin) activity; INVOLVED IN: sulfate reduction, response to salt stress, response to cold; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sulphite reductase, ferredoxin dependent (InterPro:IPR011787), Nitrite and sulphite reductase iron-sulphur/siroheme-binding site (InterPro:IPR006066), Nitrite and sulphite reductase 4Fe-4S region (InterPro:IPR006067), Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like (InterPro:IPR005117); BEST Arabidopsis thaliana protein match is: NIR1 (NITRITE REDUCTASE 1); ferredoxin-nitrate reductase/ nitrite reductase (NO-forming) (TAIR:AT2G15620.1); Has 3126 Blast hits to 3052 proteins in 964 species: Archae - 81; Bacteria - 2183; Metazoa - 0; Fungi - 92; Plants - 122; Viruses - 0; Other Eukaryotes - 648 (source: NCBI BLink).  protein_id AT5G04590.1p  transcript_id AT5G04590.1  protein_id AT5G04590.1p  transcript_id AT5G04590.1  
At5g04600	chr5:001323700	0.0	W/1323700-1323813,1323918-1324035,1324178-1324233,1324325-1324372,1324469-1324566,1325083-1325152,1325241-1325351,1325433-1325486	AT5G04600.1  CDS  gene_syn T1E3.1  go_component nucleolus|GO:0005730|15496452|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT3G47120.1); Has 7009 Blast hits to 6604 proteins in 494 species: Archae - 4; Bacteria - 754; Metazoa - 3705; Fungi - 838; Plants - 941; Viruses - 0; Other Eukaryotes - 767 (source: NCBI BLink).  protein_id AT5G04600.1p  transcript_id AT5G04600.1  protein_id AT5G04600.1p  transcript_id AT5G04600.1  
At5g04610	chr5:001325612	0.0	C/1325612-1326916	AT5G04610.1  CDS  gene_syn T1E3.8  go_function catalytic activity|GO:0003824||IEA  product spermidine synthase-related / putrescine aminopropyltransferase-related  note spermidine synthase-related / putrescine aminopropyltransferase-related; FUNCTIONS IN: catalytic activity; EXPRESSED IN: shoot apex, sperm cell, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: methyltransferase (TAIR:AT2G31740.1); Has 683 Blast hits to 682 proteins in 218 species: Archae - 20; Bacteria - 199; Metazoa - 153; Fungi - 32; Plants - 174; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT5G04610.1p  transcript_id AT5G04610.1  protein_id AT5G04610.1p  transcript_id AT5G04610.1  
At5g04620	chr5:001327292	0.0	W/1327292-1327541,1327775-1327905,1327986-1328093,1328189-1328427,1328504-1328545,1328783-1328870,1328960-1329093,1329298-1329537,1329627-1329695,1329805-1329934	AT5G04620.2  CDS  gene_syn 7-KETO-8-AMINOPELARGONIC ACID (KAPA) SYNTHASE, ATBIOF, BIOTIN F, T1E3.3  gene ATBIOF  function The cDNA encoding 7-keto-8-aminopelargonic acid (KAPA) synthase, the first committed enzyme of the biotin synthesis pathway has been cloned and its molecular function confirmed (functional complementation of an E. coli mutant). The subcellular localization of the enzyme (cytosol) proves that the biotin biosynthesis in plants takes place in different compartments which differs from the biosynthetic route found in microorganisms.  go_component cytosol|GO:0005829|16299174|IDA  go_process biosynthetic process|GO:0009058||ISS  go_process biotin biosynthetic process|GO:0009102|16299174|IDA  go_function transaminase activity|GO:0008483||ISS  go_function 8-amino-7-oxononanoate synthase activity|GO:0008710|16299174|IGI  product ATBIOF (BIOTIN F); 8-amino-7-oxononanoate synthase/ transaminase  note BIOTIN F (ATBIOF); FUNCTIONS IN: transaminase activity, 8-amino-7-oxononanoate synthase activity; INVOLVED IN: biotin biosynthetic process, biosynthetic process; LOCATED IN: cytosol; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: LCB2; protein binding / serine C-palmitoyltransferase (TAIR:AT5G23670.2); Has 6821 Blast hits to 6804 proteins in 1228 species: Archae - 45; Bacteria - 3763; Metazoa - 602; Fungi - 389; Plants - 136; Viruses - 6; Other Eukaryotes - 1880 (source: NCBI BLink).  protein_id AT5G04620.2p  transcript_id AT5G04620.2  protein_id AT5G04620.2p  transcript_id AT5G04620.2  
At5g04620	chr5:001328004	0.0	W/1328004-1328093,1328189-1328427,1328504-1328545,1328783-1328870,1328960-1329093,1329298-1329537,1329627-1329695,1329805-1329934	AT5G04620.1  CDS  gene_syn 7-KETO-8-AMINOPELARGONIC ACID (KAPA) SYNTHASE, ATBIOF, BIOTIN F, T1E3.3  gene ATBIOF  function The cDNA encoding 7-keto-8-aminopelargonic acid (KAPA) synthase, the first committed enzyme of the biotin synthesis pathway has been cloned and its molecular function confirmed (functional complementation of an E. coli mutant). The subcellular localization of the enzyme (cytosol) proves that the biotin biosynthesis in plants takes place in different compartments which differs from the biosynthetic route found in microorganisms.  go_component cytosol|GO:0005829|16299174|IDA  go_process biosynthetic process|GO:0009058||ISS  go_process biotin biosynthetic process|GO:0009102|16299174|IDA  go_function transaminase activity|GO:0008483||ISS  go_function 8-amino-7-oxononanoate synthase activity|GO:0008710|16299174|IGI  product ATBIOF (BIOTIN F); 8-amino-7-oxononanoate synthase/ transaminase  note BIOTIN F (ATBIOF); FUNCTIONS IN: transaminase activity, 8-amino-7-oxononanoate synthase activity; INVOLVED IN: biotin biosynthetic process, biosynthetic process; LOCATED IN: cytosol; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: LCB2; protein binding / serine C-palmitoyltransferase (TAIR:AT5G23670.2); Has 6581 Blast hits to 6568 proteins in 1228 species: Archae - 45; Bacteria - 3751; Metazoa - 546; Fungi - 388; Plants - 135; Viruses - 6; Other Eukaryotes - 1710 (source: NCBI BLink).  protein_id AT5G04620.1p  transcript_id AT5G04620.1  protein_id AT5G04620.1p  transcript_id AT5G04620.1  
At5g04630	chr5:001330578	0.0	W/1330578-1332107	AT5G04630.1  CDS  gene_syn CYP77A9, T1E3.4  gene CYP77A9  function member of CYP77A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP77A9; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP77A9; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: UNE9 (UNFERTILIZED EMBRYO SAC 9); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G10560.1); Has 23413 Blast hits to 23249 proteins in 1250 species: Archae - 21; Bacteria - 2199; Metazoa - 10377; Fungi - 4069; Plants - 5748; Viruses - 3; Other Eukaryotes - 996 (source: NCBI BLink).  protein_id AT5G04630.1p  transcript_id AT5G04630.1  protein_id AT5G04630.1p  transcript_id AT5G04630.1  
At5g04640	chr5:001332825	0.0	W/1332825-1333793	AT5G04640.1  CDS  gene_syn AGAMOUS-LIKE 99, AGL99, T1E3.5  gene AGL99  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL99 (AGAMOUS-LIKE 99); DNA binding / transcription factor  note AGAMOUS-LIKE 99 (AGL99); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: N-terminal protein myristoylation, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL97 (AGAMOUS-LIKE 97); DNA binding / transcription factor (TAIR:AT1G46408.1); Has 1279 Blast hits to 1279 proteins in 249 species: Archae - 0; Bacteria - 2; Metazoa - 128; Fungi - 42; Plants - 1091; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT5G04640.1p  transcript_id AT5G04640.1  protein_id AT5G04640.1p  transcript_id AT5G04640.1  
At5g04650	chr5:001334403	0.0	W/1334403-1334956	AT5G04650.1  mRNA_TE_gene  pseudo  gene_syn T1E3.10, T1E3_10  note Transposable element gene  
At5g04660	chr5:001336049	0.0	W/1336049-1337587	AT5G04660.1  CDS  gene_syn CYP77A4, T1E3.20, T1E3_20  gene CYP77A4  function encodes a protein with cytochrome P450 domain  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP77A4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP77A4; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP77A6; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G10570.1); Has 23690 Blast hits to 23528 proteins in 1272 species: Archae - 46; Bacteria - 2427; Metazoa - 10345; Fungi - 4056; Plants - 5717; Viruses - 3; Other Eukaryotes - 1096 (source: NCBI BLink).  protein_id AT5G04660.1p  transcript_id AT5G04660.1  protein_id AT5G04660.1p  transcript_id AT5G04660.1  
At5g04670	chr5:001340240	0.0	C/1340240-1340884,1338800-1340110,1338591-1338708,1337998-1338224	AT5G04670.1  CDS  gene_syn T1E3.30, T1E3_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT4G32620.2); Has 197 Blast hits to 193 proteins in 56 species: Archae - 0; Bacteria - 2; Metazoa - 139; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT5G04670.1p  transcript_id AT5G04670.1  protein_id AT5G04670.1p  transcript_id AT5G04670.1  
At5g04680	chr5:001348676	0.0	C/1348676-1348850,1347855-1348535,1347527-1347718,1347031-1347461,1346314-1346952	AT5G04680.1  CDS  gene_syn T1E3.40, T1E3_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04700.1); Has 351 Blast hits to 330 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 63; Fungi - 2; Plants - 240; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT5G04680.1p  transcript_id AT5G04680.1  protein_id AT5G04680.1p  transcript_id AT5G04680.1  
At5g04690	chr5:001352327	0.0	C/1352327-1352525,1351594-1352085,1351393-1351503,1351005-1351049,1350489-1350910,1349781-1350389	AT5G04690.1  CDS  gene_syn T1E3.50, T1E3_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04700.1); Has 1580 Blast hits to 1190 proteins in 96 species: Archae - 2; Bacteria - 80; Metazoa - 484; Fungi - 38; Plants - 415; Viruses - 2; Other Eukaryotes - 559 (source: NCBI BLink).  protein_id AT5G04690.1p  transcript_id AT5G04690.1  protein_id AT5G04690.1p  transcript_id AT5G04690.1  
At5g04700	chr5:001356541	0.0	C/1356541-1356754,1355934-1356425,1355692-1355844,1355544-1355603,1355424-1355468,1354929-1355359,1354240-1354854	AT5G04700.1  CDS  gene_syn MUK11.2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04680.1); Has 868 Blast hits to 744 proteins in 75 species: Archae - 0; Bacteria - 22; Metazoa - 164; Fungi - 15; Plants - 471; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink).  protein_id AT5G04700.1p  transcript_id AT5G04700.1  protein_id AT5G04700.1p  transcript_id AT5G04700.1  
At5g04710	chr5:001359876	0.0	C/1359876-1360128,1359661-1359796,1359205-1359477,1358949-1359090,1358379-1358618,1358048-1358180,1357721-1357902,1357486-1357598,1357273-1357381	AT5G04710.1  CDS  gene_syn MUK11.9  go_component vacuole|GO:0005773||IEA  go_component chloroplast|GO:0009507||IEA  go_process proteolysis|GO:0006508||IEA  go_function aminopeptidase activity|GO:0004177||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component vacuole|GO:0005773||ISS  go_process proteolysis|GO:0006508||ISS  product aspartyl aminopeptidase, putative  note aspartyl aminopeptidase, putative; FUNCTIONS IN: aminopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M18, aminopeptidase I (InterPro:IPR001948); BEST Arabidopsis thaliana protein match is: aspartyl aminopeptidase, putative (TAIR:AT5G60160.1); Has 1276 Blast hits to 1273 proteins in 389 species: Archae - 1; Bacteria - 687; Metazoa - 123; Fungi - 173; Plants - 40; Viruses - 0; Other Eukaryotes - 252 (source: NCBI BLink).  protein_id AT5G04710.1p  transcript_id AT5G04710.1  protein_id AT5G04710.1p  transcript_id AT5G04710.1  
At5g04720	chr5:001360748	0.0	W/1360748-1361429,1361628-1361989,1362078-1362433,1362536-1362741,1362836-1363665	AT5G04720.1  CDS  gene_syn ADR1-L2, ADR1-like 2, MUK11.4  gene ADR1-L2  go_process apoptosis|GO:0006915||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product ADR1-L2 (ADR1-like 2); ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding  note ADR1-like 2 (ADR1-L2); FUNCTIONS IN: protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: defense response, apoptosis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Disease resistance, plant (InterPro:IPR014011), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: ADR1-L1 (ADR1-like 1); ATP binding / protein binding (TAIR:AT4G33300.2); Has 16716 Blast hits to 11049 proteins in 439 species: Archae - 24; Bacteria - 1102; Metazoa - 2478; Fungi - 82; Plants - 12542; Viruses - 0; Other Eukaryotes - 488 (source: NCBI BLink).  protein_id AT5G04720.1p  transcript_id AT5G04720.1  protein_id AT5G04720.1p  transcript_id AT5G04720.1  
At5g04730	chr5:001367297	0.0	C/1367297-1367303,1366428-1366940,1365806-1365958,1365647-1365688,1365460-1365504,1364101-1365152	AT5G04730.1  CDS  gene_syn MUK11.5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04700.1); Has 423 Blast hits to 420 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 421; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G04730.1p  transcript_id AT5G04730.1  protein_id AT5G04730.1p  transcript_id AT5G04730.1  
At5g04740	chr5:001371207	0.0	C/1371207-1371391,1370689-1370752,1370319-1370441,1370075-1370169,1369616-1369700,1369447-1369506,1369229-1369284,1369014-1369119,1368859-1368927,1368713-1368775	AT5G04740.1  CDS  gene_syn MUK11.6  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process metabolic process|GO:0008152||IEA  go_function amino acid binding|GO:0016597||IEA  product ACT domain-containing protein  note ACT domain-containing protein; FUNCTIONS IN: amino acid binding; INVOLVED IN: metabolic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: uridylyltransferase-related (TAIR:AT1G16880.1); Has 345 Blast hits to 335 proteins in 47 species: Archae - 0; Bacteria - 65; Metazoa - 0; Fungi - 0; Plants - 176; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT5G04740.1p  transcript_id AT5G04740.1  protein_id AT5G04740.1p  transcript_id AT5G04740.1  
At5g04750	chr5:001372202	0.0	W/1372202-1372371,1373054-1373108	AT5G04750.2  CDS  gene_syn MUK11.3  go_function ATPase inhibitor activity|GO:0042030||ISS  product F1F0-ATPase inhibitor protein, putative  note F1F0-ATPase inhibitor protein, putative; FUNCTIONS IN: ATPase inhibitor activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 8 Blast hits to 8 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G04750.2p  transcript_id AT5G04750.2  protein_id AT5G04750.2p  transcript_id AT5G04750.2  
At5g04750	chr5:001372202	0.0	W/1372202-1372381,1373054-1373134,1373338-1373361	AT5G04750.1  CDS  gene_syn MUK11.3  go_function ATPase inhibitor activity|GO:0042030||ISS  product F1F0-ATPase inhibitor protein, putative  note F1F0-ATPase inhibitor protein, putative; FUNCTIONS IN: ATPase inhibitor activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 33 Blast hits to 33 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G04750.1p  transcript_id AT5G04750.1  protein_id AT5G04750.1p  transcript_id AT5G04750.1  
At5g04760	chr5:001374210	0.0	C/1374210-1374529,1373752-1374079	AT5G04760.1  CDS  gene_syn MUK11.7  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT3G11280.2); Has 832 Blast hits to 830 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 2; Plants - 757; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT5G04760.1p  transcript_id AT5G04760.1  protein_id AT5G04760.1p  transcript_id AT5G04760.1  
At5g04770	chr5:001379118	0.0	W/1379118-1379520,1379637-1380205,1380318-1380549,1381757-1382304	AT5G04770.1  CDS  gene_syn ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, ATCAT6, CAT6, CATIONIC AMINO ACID TRANSPORTER 6, MUK11.10  gene CAT6  function Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Does not mediate efficient uptake of basic amino acids in yeast or Xenopus systems but can transport neutral and acidic amino acid analogs. Expressed in sink tissues. Induced during infestation of roots by the plant parasitic root-knot nematode, Meloidogyne incognita. Localized in the plasma membrane.  go_component plasma membrane|GO:0005886|17052324|IDA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_process response to nematode|GO:0009624|17052324|IEP  go_function amino acid transmembrane transporter activity|GO:0015171|17052324|IDA  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  go_function basic amino acid transmembrane transporter activity|GO:0015174|15377779|IGI  go_function cationic amino acid transmembrane transporter activity|GO:0015326||ISS  product CAT6 (CATIONIC AMINO ACID TRANSPORTER 6); amino acid transmembrane transporter/ basic amino acid transmembrane transporter/ cationic amino acid transmembrane transporter  note CATIONIC AMINO ACID TRANSPORTER 6 (CAT6); FUNCTIONS IN: basic amino acid transmembrane transporter activity, amino acid transmembrane transporter activity, cationic amino acid transmembrane transporter activity; INVOLVED IN: transport, response to nematode; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cationic amino acid transporter (InterPro:IPR015606), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease-associated region (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: CAT7 (CATIONIC AMINO ACID TRANSPORTER 7); cationic amino acid transmembrane transporter (TAIR:AT3G10600.1); Has 17773 Blast hits to 17697 proteins in 1260 species: Archae - 306; Bacteria - 12964; Metazoa - 1633; Fungi - 1569; Plants - 179; Viruses - 0; Other Eukaryotes - 1122 (source: NCBI BLink).  protein_id AT5G04770.1p  transcript_id AT5G04770.1  protein_id AT5G04770.1p  transcript_id AT5G04770.1  
At5g04780	chr5:001384564	0.0	W/1384564-1386447	AT5G04780.1  CDS  gene_syn MUK11.8  go_component chloroplast|GO:0009507|15028209|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: MEF1 (MITOCHONDRIAL RNA EDITING FACTOR 1) (TAIR:AT5G52630.1); Has 13798 Blast hits to 4918 proteins in 150 species: Archae - 0; Bacteria - 4; Metazoa - 59; Fungi - 36; Plants - 13447; Viruses - 0; Other Eukaryotes - 252 (source: NCBI BLink).  protein_id AT5G04780.1p  transcript_id AT5G04780.1  protein_id AT5G04780.1p  transcript_id AT5G04780.1  
At5g04781	chr5:001386686	0.0	W/1386686-1387731	AT5G04781.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G75170; SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  
At5g04790	chr5:001388155	0.0	C/1388155-1388319	AT5G04790.1  CDS  gene_syn MUK11.11  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G04790.1p  transcript_id AT5G04790.1  protein_id AT5G04790.1p  transcript_id AT5G04790.1  
At5g04800	chr5:001389217	0.0	W/1389217-1389642	AT5G04800.1  CDS  gene_syn MUK11.13  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S17 (RPS17D)  note 40S ribosomal protein S17 (RPS17D); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein S17e (InterPro:IPR001210), Ribosomal protein S17e, conserved site (InterPro:IPR018273); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S17 (RPS17A) (TAIR:AT2G04390.1); Has 727 Blast hits to 727 proteins in 257 species: Archae - 117; Bacteria - 0; Metazoa - 270; Fungi - 98; Plants - 83; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT5G04800.1p  transcript_id AT5G04800.1  protein_id AT5G04800.1p  transcript_id AT5G04800.1  
At5g04800	chr5:001389217	0.0	W/1389217-1389642	AT5G04800.2  CDS  gene_syn MUK11.13  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S17 (RPS17D)  note 40S ribosomal protein S17 (RPS17D); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein S17e (InterPro:IPR001210), Ribosomal protein S17e, conserved site (InterPro:IPR018273); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S17 (RPS17A) (TAIR:AT2G04390.1); Has 727 Blast hits to 727 proteins in 257 species: Archae - 117; Bacteria - 0; Metazoa - 270; Fungi - 98; Plants - 83; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT5G04800.2p  transcript_id AT5G04800.2  protein_id AT5G04800.2p  transcript_id AT5G04800.2  
At5g04800	chr5:001389217	0.0	W/1389217-1389642	AT5G04800.3  CDS  gene_syn MUK11.13  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S17 (RPS17D)  note 40S ribosomal protein S17 (RPS17D); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein S17e (InterPro:IPR001210), Ribosomal protein S17e, conserved site (InterPro:IPR018273); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S17 (RPS17A) (TAIR:AT2G04390.1); Has 727 Blast hits to 727 proteins in 257 species: Archae - 117; Bacteria - 0; Metazoa - 270; Fungi - 98; Plants - 83; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT5G04800.3p  transcript_id AT5G04800.3  protein_id AT5G04800.3p  transcript_id AT5G04800.3  
At5g04800	chr5:001389217	0.0	W/1389217-1389642	AT5G04800.4  CDS  gene_syn MUK11.13  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S17 (RPS17D)  note 40S ribosomal protein S17 (RPS17D); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein S17e (InterPro:IPR001210), Ribosomal protein S17e, conserved site (InterPro:IPR018273); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S17 (RPS17A) (TAIR:AT2G04390.1); Has 727 Blast hits to 727 proteins in 257 species: Archae - 117; Bacteria - 0; Metazoa - 270; Fungi - 98; Plants - 83; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT5G04800.4p  transcript_id AT5G04800.4  protein_id AT5G04800.4p  transcript_id AT5G04800.4  
At5g04810	chr5:001390049	0.0	W/1390049-1390966,1391073-1391200,1391379-1391519,1391610-1391696,1391772-1391925,1392014-1392073,1392155-1392583,1392667-1392962,1393039-1393168,1393245-1393760	AT5G04810.1  CDS  gene_syn MUK11.12  go_component chloroplast|GO:0009507|18431481|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Pentatricopeptide repeat (InterPro:IPR002885), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT1G05670.2); Has 31905 Blast hits to 10772 proteins in 409 species: Archae - 7; Bacteria - 279; Metazoa - 3431; Fungi - 1699; Plants - 24118; Viruses - 137; Other Eukaryotes - 2234 (source: NCBI BLink).  protein_id AT5G04810.1p  transcript_id AT5G04810.1  protein_id AT5G04810.1p  transcript_id AT5G04810.1  
At5g04820	chr5:001399685	0.0	W/1399685-1400467	AT5G04820.1  CDS  gene_syn ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ATOFP13, MUK11.14, MUK11_14, OFP13  gene OFP13  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product OFP13 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13)  note ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13 (OFP13); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623, plant (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: OFP18 (OVATE FAMILY PROTEIN 18) (TAIR:AT3G52540.1); Has 225 Blast hits to 225 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 225; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G04820.1p  transcript_id AT5G04820.1  protein_id AT5G04820.1p  transcript_id AT5G04820.1  
At5g04830	chr5:001403577	0.0	C/1403577-1403671,1403025-1403108,1402888-1402927,1402717-1402785,1402522-1402631,1402294-1402432	AT5G04830.1  CDS  gene_syn MUK11.15, MUK11_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 53 Blast hits to 51 proteins in 20 species: Archae - 0; Bacteria - 2; Metazoa - 6; Fungi - 21; Plants - 23; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G04830.1p  transcript_id AT5G04830.1  protein_id AT5G04830.1p  transcript_id AT5G04830.1  
At5g04830	chr5:001403577	0.0	C/1403577-1403671,1403025-1403108,1402888-1402927,1402717-1402785,1402522-1402631,1402294-1402432	AT5G04830.2  CDS  gene_syn MUK11.15, MUK11_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 53 Blast hits to 51 proteins in 20 species: Archae - 0; Bacteria - 2; Metazoa - 6; Fungi - 21; Plants - 23; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G04830.2p  transcript_id AT5G04830.2  protein_id AT5G04830.2p  transcript_id AT5G04830.2  
At5g04840	chr5:001406005	0.0	W/1406005-1406540,1406946-1407021,1407242-1407368,1407464-1407648	AT5G04840.1  CDS  gene_syn MUK11.16, MUK11_16  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product bZIP protein  note bZIP protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT2G42380.2); Has 249 Blast hits to 247 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 249; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G04840.1p  transcript_id AT5G04840.1  protein_id AT5G04840.1p  transcript_id AT5G04840.1  
At5g04850	chr5:001409738	0.0	C/1409738-1409806,1409353-1409504,1409177-1409270,1409020-1409091,1408821-1408932,1408555-1408709,1408246-1408299	AT5G04850.1  CDS  gene_syn MUK11.17, MUK11_17, VPS60.2  gene VPS60.2  go_component cellular_component|GO:0005575||ND  go_process vesicle-mediated transport|GO:0016192|16488176|ISS  product VPS60.2  note VPS60.2; INVOLVED IN: vesicle-mediated transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: VPS60.1 (TAIR:AT3G10640.1); Has 906 Blast hits to 906 proteins in 160 species: Archae - 3; Bacteria - 0; Metazoa - 432; Fungi - 204; Plants - 144; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).  protein_id AT5G04850.1p  transcript_id AT5G04850.1  protein_id AT5G04850.1p  transcript_id AT5G04850.1  
At5g04853	chr5:001410527	0.0	C/1410527-1410703	AT5G04853.1  CDS  product unknown protein  note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28674.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G04853.1p  transcript_id AT5G04853.1  protein_id AT5G04853.1p  transcript_id AT5G04853.1  
At5g04860	chr5:001414085	0.0	C/1414085-1414459,1413749-1413904,1412974-1413660,1411760-1412890	AT5G04860.1  CDS  gene_syn MUK11.18, MUK11_18  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11760.1); Has 151 Blast hits to 131 proteins in 41 species: Archae - 0; Bacteria - 6; Metazoa - 23; Fungi - 42; Plants - 56; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT5G04860.1p  transcript_id AT5G04860.1  protein_id AT5G04860.1p  transcript_id AT5G04860.1  
At5g04870	chr5:001418965	0.0	C/1418965-1419877,1418704-1418847,1418456-1418608,1418179-1418294,1417856-1418023,1417480-1417704,1417015-1417128	AT5G04870.1  CDS  gene_syn ATCPK1, CALCIUM DEPENDENT PROTEIN KINASE, CALCIUM DEPENDENT PROTEIN KINASE 1, CPK1  gene CPK1  function A calcium-dependent protein kinase that can phosphorylate phenylalanine ammonia lyase (PAL), a key enzyme in pathogen defense.  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component peroxisome|GO:0005777|12913141|IDA  go_component membrane|GO:0016020||NAS  go_process protein amino acid phosphorylation|GO:0006468|11513879|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function calmodulin-dependent protein kinase activity|GO:0004683|10080688|ISS  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  go_function kinase activity|GO:0016301||ISS  product CPK1 (CALCIUM DEPENDENT PROTEIN KINASE 1); calmodulin-dependent protein kinase/ kinase  note CALCIUM DEPENDENT PROTEIN KINASE 1 (CPK1); FUNCTIONS IN: calmodulin-dependent protein kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: peroxisome, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), Tyrosine protein kinase (InterPro:IPR001245), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CPK2 (CALMODULIN-DOMAIN PROTEIN KINASE CDPK ISOFORM 2); calmodulin-dependent protein kinase/ kinase/ protein serine/threonine kinase (TAIR:AT3G10660.1); Has 99441 Blast hits to 92569 proteins in 2773 species: Archae - 64; Bacteria - 8220; Metazoa - 42749; Fungi - 12895; Plants - 15593; Viruses - 440; Other Eukaryotes - 19480 (source: NCBI BLink).  protein_id AT5G04870.1p  transcript_id AT5G04870.1  protein_id AT5G04870.1p  transcript_id AT5G04870.1  
At5g04880	chr5:001420727	0.0	C/1420727-1422582	AT5G04880.1  pseudogenic_transcript  pseudo  gene_syn MUK11.20, MUK11_20  function pseudogene of ABC transporter family protein  note expressed protein  
At5g04885	chr5:001423369	0.0	W/1423369-1423594,1423898-1424102,1424205-1424295,1424399-1424544,1424625-1424868,1425062-1425166,1425254-1425436,1425517-1425718,1425846-1426338,1426433-1426519,1426613-1426628	AT5G04885.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 3 protein  note glycosyl hydrolase family 3 protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 7 plant structures; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 3 protein (TAIR:AT5G20950.2); Has 5829 Blast hits to 5471 proteins in 844 species: Archae - 20; Bacteria - 2907; Metazoa - 6; Fungi - 873; Plants - 279; Viruses - 0; Other Eukaryotes - 1744 (source: NCBI BLink).  protein_id AT5G04885.1p  transcript_id AT5G04885.1  protein_id AT5G04885.1p  transcript_id AT5G04885.1  
At5g04890	chr5:001427217	0.0	W/1427217-1427334,1427408-1428390	AT5G04890.1  CDS  gene_syn MUK11.22, MUK11_22, RESTRICTED TEV MOVEMENT 2, RTM2  gene RTM2  function Specifically restricts the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance. Multidomain protein containing an N-terminal region with high similarity to plant small heat shock proteins (HSPs).  go_process response to heat|GO:0009408|10760245|IEP  go_process response to virus|GO:0009615|9892709|IMP  go_function molecular_function|GO:0003674||ND  product RTM2 (RESTRICTED TEV MOVEMENT 2)  note RESTRICTED TEV MOVEMENT 2 (RTM2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to virus, response to heat; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: heat shock family protein (TAIR:AT5G20970.1); Has 82243 Blast hits to 39869 proteins in 1849 species: Archae - 511; Bacteria - 10934; Metazoa - 36102; Fungi - 5731; Plants - 2894; Viruses - 387; Other Eukaryotes - 25684 (source: NCBI BLink).  protein_id AT5G04890.1p  transcript_id AT5G04890.1  protein_id AT5G04890.1p  transcript_id AT5G04890.1  
At5g04895	chr5:001428796	0.0	W/1428796-1429053,1429280-1429434,1429525-1429612,1429704-1429937,1430025-1430120,1430201-1430389,1430522-1430681,1430765-1430895,1431003-1431173,1431328-1431600,1431709-1431903,1432128-1432331,1432482-1432551,1432657-1432805,1433041-1433349,1433441-1433500,1433599-1433751,1433846-1433956,1434037-1434516	AT5G04895.1  CDS  go_component intracellular|GO:0005622||IEA  go_component mitochondrion|GO:0005739||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function double-stranded RNA binding|GO:0003725||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function helicase activity|GO:0004386||ISS  go_function ATP binding|GO:0005524||ISS  product ATP binding / ATP-dependent helicase/ double-stranded RNA binding / helicase/ nucleic acid binding  note ATP binding / ATP-dependent helicase/ double-stranded RNA binding / helicase/ nucleic acid binding; FUNCTIONS IN: double-stranded RNA binding, helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, intracellular; CONTAINS InterPro DOMAIN/s: Helicase-associated region (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Region of unknown function DUF1605 (InterPro:IPR011709), Double-stranded RNA binding (InterPro:IPR001159), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: helicase domain-containing protein (TAIR:AT1G48650.2); Has 8637 Blast hits to 6089 proteins in 880 species: Archae - 0; Bacteria - 2809; Metazoa - 2528; Fungi - 1112; Plants - 475; Viruses - 43; Other Eukaryotes - 1670 (source: NCBI BLink).  protein_id AT5G04895.1p  transcript_id AT5G04895.1  protein_id AT5G04895.1p  transcript_id AT5G04895.1  
At5g04900	chr5:001434826	0.0	W/1434826-1435093,1435213-1435281,1435413-1435471,1435568-1435654,1435793-1435860,1435948-1435996,1436084-1436169,1436276-1436333,1436419-1436469,1436658-1436708,1436784-1436825,1436923-1437033,1437147-1437194	AT5G04900.1  CDS  gene_syn MUG13.25, MUG13_25  go_component chloroplast|GO:0009507|18431481|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT4G13250.1); Has 61706 Blast hits to 61658 proteins in 2103 species: Archae - 428; Bacteria - 36076; Metazoa - 4372; Fungi - 3044; Plants - 1504; Viruses - 2; Other Eukaryotes - 16280 (source: NCBI BLink).  protein_id AT5G04900.1p  transcript_id AT5G04900.1  protein_id AT5G04900.1p  transcript_id AT5G04900.1  
At5g04910	chr5:001437695	0.0	W/1437695-1437894,1438132-1438225,1438313-1438417,1438501-1438770	AT5G04910.1  CDS  gene_syn MUG13.24, MUG13_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 38 Blast hits to 38 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G04910.1p  transcript_id AT5G04910.1  protein_id AT5G04910.1p  transcript_id AT5G04910.1  
At5g04920	chr5:001440931	0.0	C/1440931-1441545,1440456-1440659,1440061-1440154,1439909-1439966,1439740-1439809,1439487-1439622,1439309-1439393,1439172-1439232	AT5G04920.1  CDS  gene_syn MUG13.23, MUG13_23, VPS36  go_component ESCRT II complex|GO:0000814|17090720|ISS  go_process vesicle-mediated transport|GO:0016192|16488176|ISS  go_function transporter activity|GO:0005215||ISS  product vacuolar protein sorting 36 family protein / VPS36 family protein  note vacuolar protein sorting 36 family protein / VPS36 family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: vesicle-mediated transport; LOCATED IN: ESCRT II complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EAP30 (InterPro:IPR007286); Has 235 Blast hits to 233 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 67; Plants - 24; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT5G04920.1p  transcript_id AT5G04920.1  protein_id AT5G04920.1p  transcript_id AT5G04920.1  
At5g04930	chr5:001445509	0.0	W/1445509-1446994,1447095-1447401,1447512-1448172,1448260-1448383,1448494-1448713,1448795-1449253,1449349-1449568	AT5G04930.1  CDS  gene_syn ALA1, aminophospholipid ATPase1  gene ALA1  function Encodes a putative aminophospholipid translocase (p-type ATPase) involved in chilling response.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process ATP biosynthetic process|GO:0006754||IEA  go_process phospholipid transport|GO:0015914||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662||ISS  product ALA1 (aminophospholipid ATPase1); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism  note aminophospholipid ATPase1 (ALA1); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: phospholipid transport, ATP biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, phospholipid-translocating, flippase (InterPro:IPR006539), ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), HAD superfamily hydrolase-like, type 3 (InterPro:IPR013200); BEST Arabidopsis thaliana protein match is: haloacid dehalogenase-like hydrolase family protein (TAIR:AT3G27870.1); Has 7859 Blast hits to 7001 proteins in 905 species: Archae - 81; Bacteria - 1610; Metazoa - 2932; Fungi - 1291; Plants - 434; Viruses - 0; Other Eukaryotes - 1511 (source: NCBI BLink).  protein_id AT5G04930.1p  transcript_id AT5G04930.1  protein_id AT5G04930.1p  transcript_id AT5G04930.1  
At5g04940	chr5:001454616	0.0	C/1454616-1456628	AT5G04940.1  CDS  gene_syn MUG13.20, MUG13_20, SU(VAR)3-9 HOMOLOG 1, SUVH1  gene SUVH1  function Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain.  go_component nucleus|GO:0005634||IDA  go_process regulation of gene expression, epigenetic|GO:0040029||TAS  go_function histone methyltransferase activity|GO:0042054||ISS  product SUVH1 (SU(VAR)3-9 HOMOLOG 1); histone methyltransferase  note SU(VAR)3-9 HOMOLOG 1 (SUVH1); FUNCTIONS IN: histone methyltransferase activity; INVOLVED IN: regulation of gene expression, epigenetic; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), SRA-YDG (InterPro:IPR003105), Pre-SET zinc-binding region (InterPro:IPR007728), Post-SET zinc-binding region (InterPro:IPR003616); BEST Arabidopsis thaliana protein match is: SUVH3 (SU(VAR)3-9 HOMOLOG 3); histone methyltransferase (TAIR:AT1G73100.1); Has 3035 Blast hits to 2877 proteins in 294 species: Archae - 0; Bacteria - 203; Metazoa - 1789; Fungi - 322; Plants - 501; Viruses - 5; Other Eukaryotes - 215 (source: NCBI BLink).  protein_id AT5G04940.1p  transcript_id AT5G04940.1  protein_id AT5G04940.1p  transcript_id AT5G04940.1  
At5g04940	chr5:001454616	0.0	C/1454616-1456628	AT5G04940.2  CDS  gene_syn MUG13.20, MUG13_20, SU(VAR)3-9 HOMOLOG 1, SUVH1  gene SUVH1  function Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain.  go_component nucleus|GO:0005634||IDA  go_process regulation of gene expression, epigenetic|GO:0040029||TAS  go_function histone methyltransferase activity|GO:0042054||ISS  product SUVH1 (SU(VAR)3-9 HOMOLOG 1); histone methyltransferase  note SU(VAR)3-9 HOMOLOG 1 (SUVH1); FUNCTIONS IN: histone methyltransferase activity; INVOLVED IN: regulation of gene expression, epigenetic; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), SRA-YDG (InterPro:IPR003105), Pre-SET zinc-binding region (InterPro:IPR007728), Post-SET zinc-binding region (InterPro:IPR003616); BEST Arabidopsis thaliana protein match is: SUVH3 (SU(VAR)3-9 HOMOLOG 3); histone methyltransferase (TAIR:AT1G73100.1); Has 3035 Blast hits to 2877 proteins in 294 species: Archae - 0; Bacteria - 203; Metazoa - 1789; Fungi - 322; Plants - 501; Viruses - 5; Other Eukaryotes - 215 (source: NCBI BLink).  protein_id AT5G04940.2p  transcript_id AT5G04940.2  protein_id AT5G04940.2p  transcript_id AT5G04940.2  
At5g04950	chr5:001457876	0.0	C/1457876-1458838	AT5G04950.1  CDS  gene_syn ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 1, ATNAS1, MUG13.19, MUG13_19, NAS1, NICOTIANAMINE SYNTHASE 1  gene NAS1  function Encodes a nicotianamide synthase.  go_process response to salt stress|GO:0009651|11351099|IEP  go_process nicotianamine biosynthetic process|GO:0030418||IDA  go_function nicotianamine synthase activity|GO:0030410||IDA  product NAS1 (NICOTIANAMINE SYNTHASE 1); nicotianamine synthase  note NICOTIANAMINE SYNTHASE 1 (NAS1); FUNCTIONS IN: nicotianamine synthase activity; INVOLVED IN: response to salt stress, nicotianamine biosynthetic process; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Nicotianamine synthase (InterPro:IPR004298); BEST Arabidopsis thaliana protein match is: NAS2 (NICOTIANAMINE SYNTHASE 2); nicotianamine synthase (TAIR:AT5G56080.1); Has 135 Blast hits to 133 proteins in 32 species: Archae - 14; Bacteria - 4; Metazoa - 0; Fungi - 17; Plants - 99; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G04950.1p  transcript_id AT5G04950.1  protein_id AT5G04950.1p  transcript_id AT5G04950.1  
At5g04960	chr5:001461985	0.0	W/1461985-1462999,1463130-1463809	AT5G04960.1  CDS  gene_syn MUG13.18, MUG13_18  go_component cell wall|GO:0005618||IEA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: root, flower; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase inhibitor (InterPro:IPR006501), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT3G10710.1); Has 1358 Blast hits to 1313 proteins in 181 species: Archae - 0; Bacteria - 244; Metazoa - 1; Fungi - 132; Plants - 980; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G04960.1p  transcript_id AT5G04960.1  protein_id AT5G04960.1p  transcript_id AT5G04960.1  
At5g04970	chr5:001466186	0.0	C/1466186-1467001,1465163-1465520,1464868-1465059,1464262-1464770	AT5G04970.1  CDS  gene_syn MUG13.17, MUG13_17  go_component cell wall|GO:0005618||IEA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component cell wall|GO:0005618||ISS  go_process cell wall modification|GO:0042545||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase, putative  note pectinesterase, putative; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall; EXPRESSED IN: root, flower; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase inhibitor (InterPro:IPR006501), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase, putative (TAIR:AT3G10720.2); Has 50249 Blast hits to 18009 proteins in 1151 species: Archae - 169; Bacteria - 6823; Metazoa - 13882; Fungi - 4611; Plants - 9166; Viruses - 2052; Other Eukaryotes - 13546 (source: NCBI BLink).  protein_id AT5G04970.1p  transcript_id AT5G04970.1  protein_id AT5G04970.1p  transcript_id AT5G04970.1  
At5g04980	chr5:001470454	0.0	C/1470454-1470482,1470213-1470317,1469563-1470136,1469277-1469470,1469076-1469184,1468817-1468968,1468575-1468725	AT5G04980.1  CDS  gene_syn MUG13.16, MUG13_16  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product endonuclease/exonuclease/phosphatase family protein  note endonuclease/exonuclease/phosphatase family protein; FUNCTIONS IN: hydrolase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: BST1 (BRISTLED 1); hydrolase/ inositol or phosphatidylinositol phosphatase (TAIR:AT5G65090.2); Has 1512 Blast hits to 1386 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 602; Fungi - 353; Plants - 325; Viruses - 0; Other Eukaryotes - 232 (source: NCBI BLink).  protein_id AT5G04980.1p  transcript_id AT5G04980.1  protein_id AT5G04980.1p  transcript_id AT5G04980.1  
At5g04980	chr5:001470657	0.0	C/1470657-1470684,1470454-1470541,1470213-1470317,1469563-1470136,1469277-1469470,1469076-1469184,1468817-1468968,1468575-1468725	AT5G04980.2  CDS  gene_syn MUG13.16, MUG13_16  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product endonuclease/exonuclease/phosphatase family protein  note endonuclease/exonuclease/phosphatase family protein; FUNCTIONS IN: hydrolase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: BST1 (BRISTLED 1); hydrolase/ inositol or phosphatidylinositol phosphatase (TAIR:AT5G65090.1); Has 1520 Blast hits to 1386 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 603; Fungi - 360; Plants - 325; Viruses - 0; Other Eukaryotes - 232 (source: NCBI BLink).  protein_id AT5G04980.2p  transcript_id AT5G04980.2  protein_id AT5G04980.2p  transcript_id AT5G04980.2  
At5g04990	chr5:001472682	0.0	C/1472682-1473770,1471698-1472024	AT5G04990.1  CDS  gene_syn MUG13.15, MUG13_15  go_component nuclear envelope|GO:0005635|15469496|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product sad1/unc-84 protein-related  note sad1/unc-84 protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nuclear envelope, endoplasmic reticulum; EXPRESSED IN: cultured cell, callus; CONTAINS InterPro DOMAIN/s: Sad1/UNC-like, C-terminal (InterPro:IPR012919); BEST Arabidopsis thaliana protein match is: sad1/unc-84-like 2 family protein (TAIR:AT3G10730.1); Has 536 Blast hits to 535 proteins in 121 species: Archae - 6; Bacteria - 51; Metazoa - 331; Fungi - 53; Plants - 40; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT5G04990.1p  transcript_id AT5G04990.1  protein_id AT5G04990.1p  transcript_id AT5G04990.1  
At5g05000	chr5:001475671	0.0	C/1475671-1475772,1475476-1475583,1475250-1475374,1474883-1475147,1474723-1474791,1474469-1474630,1474262-1474372	AT5G05000.1  CDS  gene_syn ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34, ATTOC34, MUG13.14, MUG13_14, OEP34, TOC34, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34  gene TOC34  function Outer membrane protein that may function in import of nuclear encoded proteins into the chloroplast.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_component chloroplast outer membrane|GO:0009707|10373488|IDA  go_component chloroplast outer membrane|GO:0009707|9099756|TAS  go_process chloroplast transport|GO:0019750|9099756|TAS  go_process protein targeting to chloroplast|GO:0045036|9756470|TAS  go_function GTP binding|GO:0005525|9099756|TAS  product TOC34 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34); GTP binding  note TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34 (TOC34); FUNCTIONS IN: GTP binding; INVOLVED IN: chloroplast transport, protein targeting to chloroplast; LOCATED IN: chloroplast outer membrane, mitochondrion, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703), Chloroplast protein import component Toc34 (InterPro:IPR005688); BEST Arabidopsis thaliana protein match is: TOC33 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 33); GTP binding / GTPase/ protein binding (TAIR:AT1G02280.2); Has 741 Blast hits to 730 proteins in 126 species: Archae - 0; Bacteria - 158; Metazoa - 311; Fungi - 8; Plants - 203; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT5G05000.1p  transcript_id AT5G05000.1  protein_id AT5G05000.1p  transcript_id AT5G05000.1  
At5g05000	chr5:001475671	0.0	C/1475671-1475772,1475476-1475583,1475250-1475374,1474883-1475147,1474723-1474791,1474469-1474630,1474262-1474372	AT5G05000.2  CDS  gene_syn ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34, ATTOC34, MUG13.14, MUG13_14, OEP34, TOC34, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34  gene TOC34  function Outer membrane protein that may function in import of nuclear encoded proteins into the chloroplast.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_component chloroplast outer membrane|GO:0009707|10373488|IDA  go_component chloroplast outer membrane|GO:0009707|9099756|TAS  go_process chloroplast transport|GO:0019750|9099756|TAS  go_process protein targeting to chloroplast|GO:0045036|9756470|TAS  go_function GTP binding|GO:0005525|9099756|TAS  product TOC34 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34); GTP binding  note TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34 (TOC34); FUNCTIONS IN: GTP binding; INVOLVED IN: chloroplast transport, protein targeting to chloroplast; LOCATED IN: chloroplast outer membrane, mitochondrion, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703), Chloroplast protein import component Toc34 (InterPro:IPR005688); BEST Arabidopsis thaliana protein match is: TOC33 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 33); GTP binding / GTPase/ protein binding (TAIR:AT1G02280.2); Has 741 Blast hits to 730 proteins in 126 species: Archae - 0; Bacteria - 158; Metazoa - 311; Fungi - 8; Plants - 203; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT5G05000.2p  transcript_id AT5G05000.2  protein_id AT5G05000.2p  transcript_id AT5G05000.2  
At5g05000	chr5:001475671	0.0	C/1475671-1475772,1475476-1475583,1475250-1475374,1474883-1475147,1474723-1474791,1474469-1474630,1474262-1474372	AT5G05000.3  CDS  gene_syn ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34, ATTOC34, MUG13.14, MUG13_14, OEP34, TOC34, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34  gene TOC34  function Outer membrane protein that may function in import of nuclear encoded proteins into the chloroplast.  go_component chloroplast|GO:0009507|18431481|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_component chloroplast outer membrane|GO:0009707|10373488|IDA  go_component chloroplast outer membrane|GO:0009707|9099756|TAS  go_process chloroplast transport|GO:0019750|9099756|TAS  go_process protein targeting to chloroplast|GO:0045036|9756470|TAS  go_function GTP binding|GO:0005525|9099756|TAS  product TOC34 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34); GTP binding  note TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34 (TOC34); FUNCTIONS IN: GTP binding; INVOLVED IN: chloroplast transport, protein targeting to chloroplast; LOCATED IN: chloroplast outer membrane, mitochondrion, chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703), Chloroplast protein import component Toc34 (InterPro:IPR005688); BEST Arabidopsis thaliana protein match is: TOC33 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 33); GTP binding / GTPase/ protein binding (TAIR:AT1G02280.2); Has 741 Blast hits to 730 proteins in 126 species: Archae - 0; Bacteria - 158; Metazoa - 311; Fungi - 8; Plants - 203; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT5G05000.3p  transcript_id AT5G05000.3  protein_id AT5G05000.3p  transcript_id AT5G05000.3  
At5g05010	chr5:001477137	0.0	W/1477137-1477139,1477269-1477308,1477397-1477620,1477771-1478013,1478090-1478261,1478435-1478733,1478858-1479050,1479140-1479293,1479409-1479471,1479566-1479662,1479777-1479872	AT5G05010.1  CDS  gene_syn MUG13.13, MUG13_13  go_component membrane|GO:0016020|17432890|IDA  go_process transport|GO:0006810||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function protein binding|GO:0005515||IEA  product clathrin adaptor complexes medium subunit-related  note clathrin adaptor complexes medium subunit-related; FUNCTIONS IN: protein binding; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968), Longin-like (InterPro:IPR011012); Has 502 Blast hits to 497 proteins in 159 species: Archae - 0; Bacteria - 2; Metazoa - 197; Fungi - 145; Plants - 54; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT5G05010.1p  transcript_id AT5G05010.1  protein_id AT5G05010.1p  transcript_id AT5G05010.1  
At5g05010	chr5:001477137	0.0	W/1477137-1477139,1477269-1477308,1477397-1477620,1477771-1478013,1478090-1478261,1478435-1478733,1478858-1479050,1479140-1479293,1479409-1479471,1479566-1479662,1479777-1479872	AT5G05010.2  CDS  gene_syn MUG13.13, MUG13_13  go_component membrane|GO:0016020|17432890|IDA  go_process transport|GO:0006810||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function protein binding|GO:0005515||IEA  product clathrin adaptor complexes medium subunit-related  note clathrin adaptor complexes medium subunit-related; FUNCTIONS IN: protein binding; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968), Longin-like (InterPro:IPR011012); Has 502 Blast hits to 497 proteins in 159 species: Archae - 0; Bacteria - 2; Metazoa - 197; Fungi - 145; Plants - 54; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT5G05010.2p  transcript_id AT5G05010.2  protein_id AT5G05010.2p  transcript_id AT5G05010.2  
At5g05020	chr5:001481084	0.0	C/1481084-1481548	AT5G05020.1  CDS  gene_syn MUG13.12, MUG13_12  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41390.1); Has 19 Blast hits to 19 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G05020.1p  transcript_id AT5G05020.1  protein_id AT5G05020.1p  transcript_id AT5G05020.1  
At5g05025	chr5:001483125	0.0	C/1483125-1483538	AT5G05025.1  pseudogenic_transcript  pseudo  function Encodes a Pollen Ole e I allergen and extensin family protein [pseudogene]  
At5g05030	chr5:001485918	0.0	C/1485918-1486007,1485696-1485782,1485381-1485563,1485120-1485281,1484983-1485036,1484729-1484863,1484240-1484620	AT5G05030.1  CDS  gene_syn MUG13.11, MUG13_11  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11660.1); Has 402 Blast hits to 379 proteins in 16 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 10; Plants - 388; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G05030.1p  transcript_id AT5G05030.1  protein_id AT5G05030.1p  transcript_id AT5G05030.1  
At5g05040	chr5:001487798	0.0	C/1487798-1487968,1487567-1487722,1487260-1487448	AT5G05040.1  CDS  gene_syn MUG13.10, MUG13_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05060.1); Has 40 Blast hits to 40 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G05040.1p  transcript_id AT5G05040.1  protein_id AT5G05040.1p  transcript_id AT5G05040.1  
At5g05050	chr5:001491639	0.0	W/1491639-1491872,1491975-1492007,1492077-1492155,1492298-1492545,1492692-1492791,1493001-1493131,1493383-1493457	AT5G05050.1  CDS  gene_syn MUG13.9, MUG13_9  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_component cellular_component|GO:0005575||ND  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product peptidase C1A papain family protein  note peptidase C1A papain family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Peptidase C1A, papain C-terminal (InterPro:IPR000668); Has 208 Blast hits to 208 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 71; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT5G05050.1p  transcript_id AT5G05050.1  protein_id AT5G05050.1p  transcript_id AT5G05050.1  
At5g05060	chr5:001494829	0.0	C/1494829-1494999,1494598-1494753,1494334-1494525	AT5G05060.1  CDS  gene_syn MUG13.8, MUG13_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05040.1); Has 40 Blast hits to 40 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G05060.1p  transcript_id AT5G05060.1  protein_id AT5G05060.1p  transcript_id AT5G05060.1  
At5g05070	chr5:001496896	0.0	W/1496896-1497033,1497154-1497645,1497738-1497959,1498052-1498441	AT5G05070.1  CDS  gene_syn MUG13.7, MUG13_7  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT2G40990.1); Has 3954 Blast hits to 3944 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 1945; Fungi - 531; Plants - 405; Viruses - 0; Other Eukaryotes - 1073 (source: NCBI BLink).  protein_id AT5G05070.1p  transcript_id AT5G05070.1  protein_id AT5G05070.1p  transcript_id AT5G05070.1  
At5g05080	chr5:001499970	0.0	C/1499970-1499972,1499715-1499859,1499540-1499617,1499327-1499439,1499134-1499237,1498727-1499039	AT5G05080.1  CDS  gene_syn MUG13.6, MUG13_6, UBC22, ubiquitin-conjugating enzyme 22  gene UBC22  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC22 (ubiquitin-conjugating enzyme 22); ubiquitin-protein ligase  note ubiquitin-conjugating enzyme 22 (UBC22); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2); ubiquitin-protein ligase (TAIR:AT2G02760.1); Has 6968 Blast hits to 6959 proteins in 301 species: Archae - 0; Bacteria - 0; Metazoa - 3369; Fungi - 1306; Plants - 1062; Viruses - 19; Other Eukaryotes - 1212 (source: NCBI BLink).  protein_id AT5G05080.1p  transcript_id AT5G05080.1  protein_id AT5G05080.1p  transcript_id AT5G05080.1  
At5g05080	chr5:001499970	0.0	C/1499970-1499972,1499715-1499859,1499540-1499617,1499327-1499439,1499134-1499237,1498727-1499039	AT5G05080.2  CDS  gene_syn MUG13.6, MUG13_6, UBC22, ubiquitin-conjugating enzyme 22  gene UBC22  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC22 (ubiquitin-conjugating enzyme 22); ubiquitin-protein ligase  note ubiquitin-conjugating enzyme 22 (UBC22); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2); ubiquitin-protein ligase (TAIR:AT2G02760.1); Has 6968 Blast hits to 6959 proteins in 301 species: Archae - 0; Bacteria - 0; Metazoa - 3369; Fungi - 1306; Plants - 1062; Viruses - 19; Other Eukaryotes - 1212 (source: NCBI BLink).  protein_id AT5G05080.2p  transcript_id AT5G05080.2  protein_id AT5G05080.2p  transcript_id AT5G05080.2  
At5g05090	chr5:001503393	0.0	W/1503393-1504193	AT5G05090.1  CDS  gene_syn MUG13.5, MUG13_5  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT3G10760.1); Has 890 Blast hits to 890 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 877; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT5G05090.1p  transcript_id AT5G05090.1  protein_id AT5G05090.1p  transcript_id AT5G05090.1  
At5g05100	chr5:001506859	0.0	C/1506859-1506940,1505882-1506539,1505582-1505800,1505461-1505476	AT5G05100.1  CDS  gene_syn MUG13.4, MUG13_4  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Single-stranded nucleic acid binding R3H (InterPro:IPR001374); BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT3G10770.2); Has 294 Blast hits to 294 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 168; Fungi - 39; Plants - 85; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G05100.1p  transcript_id AT5G05100.1  protein_id AT5G05100.1p  transcript_id AT5G05100.1  
At5g05110	chr5:001508538	0.0	C/1508538-1508765,1508096-1508309,1507828-1507973,1507615-1507725	AT5G05110.1  CDS  gene_syn MUG13.3, MUG13_3  go_component endomembrane system|GO:0012505||IEA  go_function cysteine-type endopeptidase inhibitor activity|GO:0004869||IEA  go_process biological_process|GO:0008150||ND  go_function cysteine-type endopeptidase inhibitor activity|GO:0004869||ISS  product cysteine protease inhibitor, putative / cystatin, putative  note cysteine protease inhibitor, putative / cystatin, putative; FUNCTIONS IN: cysteine-type endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I25, cystatin, conserved site (InterPro:IPR018073), Proteinase inhibitor I25, cystatin (InterPro:IPR000010); BEST Arabidopsis thaliana protein match is: cysteine protease inhibitor, putative / cystatin, putative (TAIR:AT3G12490.2); Has 445 Blast hits to 422 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 436; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G05110.1p  transcript_id AT5G05110.1  protein_id AT5G05110.1p  transcript_id AT5G05110.1  
At5g05113	chr5:001509733	0.0	C/1509733-1509990	AT5G05113.1  CDS  go_component mitochondrion|GO:0005739||IEA  product unknown protein  note unknown protein; LOCATED IN: mitochondrion; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G05113.1p  transcript_id AT5G05113.1  protein_id AT5G05113.1p  transcript_id AT5G05113.1  
At5g05120	chr5:001511232	0.0	W/1511232-1511837	AT5G05120.1  CDS  gene_syn MUG13.2, MUG13_2  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: ZFP7 (ZINC FINGER PROTEIN 7); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT1G24625.1); Has 336 Blast hits to 335 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 336; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G05120.1p  transcript_id AT5G05120.1  protein_id AT5G05120.1p  transcript_id AT5G05120.1  
At5g05130	chr5:001512173	0.0	W/1512173-1513657,1513741-1514032,1514107-1514918	AT5G05130.1  CDS  gene_syn MUG13.1, MUG13_1  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides|GO:0016818||IEA  go_function DNA binding|GO:0003677||ISS  go_function helicase activity|GO:0004386||ISS  go_function protein binding|GO:0005515||ISS  go_function ATP binding|GO:0005524||ISS  go_function zinc ion binding|GO:0008270||ISS  product SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein  note SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; FUNCTIONS IN: in 7 functions; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), SNF2-related (InterPro:IPR000330), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), HIP116, Rad5p N-terminal (InterPro:IPR014905); BEST Arabidopsis thaliana protein match is: RAD5; ATP binding / ATP-dependent helicase/ DNA binding / helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding / protein binding / zinc ion binding (TAIR:AT5G22750.1); Has 17951 Blast hits to 12137 proteins in 1096 species: Archae - 65; Bacteria - 3585; Metazoa - 5755; Fungi - 3495; Plants - 1322; Viruses - 142; Other Eukaryotes - 3587 (source: NCBI BLink).  protein_id AT5G05130.1p  transcript_id AT5G05130.1  protein_id AT5G05130.1p  transcript_id AT5G05130.1  
At5g05140	chr5:001520353	0.0	W/1520353-1520814,1520903-1520971,1521052-1521134,1521229-1521281,1521398-1521547,1521633-1521925,1522008-1522089,1522179-1522297	AT5G05140.1  CDS  gene_syn MUG13.28  go_component nucleus|GO:0005634||IEA  go_process transcription|GO:0006350||IEA  go_function DNA binding|GO:0003677||IEA  go_function protein binding|GO:0005515||IEA  go_function transcription regulator activity|GO:0030528||IEA  product transcription elongation factor-related  note transcription elongation factor-related; FUNCTIONS IN: protein binding, transcription regulator activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TFIIS N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal (InterPro:IPR014765), Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal (InterPro:IPR010990); BEST Arabidopsis thaliana protein match is: DNA binding / protein binding / transcription regulator (TAIR:AT3G10820.1); Has 546 Blast hits to 538 proteins in 84 species: Archae - 0; Bacteria - 12; Metazoa - 341; Fungi - 16; Plants - 131; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT5G05140.1p  transcript_id AT5G05140.1  protein_id AT5G05140.1p  transcript_id AT5G05140.1  
At5g05150	chr5:001525474	0.0	C/1525474-1526199,1525063-1525349,1524841-1524952	AT5G05150.1  CDS  gene_syn AtATG18e, K2A11.2, K2A11_2  gene AtATG18e  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product AtATG18e  note AtATG18e; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot, flower, root, leaf; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: AtATG18d (TAIR:AT3G56440.1); Has 1078 Blast hits to 1050 proteins in 178 species: Archae - 2; Bacteria - 25; Metazoa - 517; Fungi - 286; Plants - 110; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).  protein_id AT5G05150.1p  transcript_id AT5G05150.1  protein_id AT5G05150.1p  transcript_id AT5G05150.1  
At5g05160	chr5:001528000	0.0	W/1528000-1529299,1529395-1530017	AT5G05160.1  CDS  gene_syn K2A11.3, K2A11_3  go_component cell wall|GO:0005618|15593128|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: cell wall, plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT5G58300.2); Has 95063 Blast hits to 77022 proteins in 2203 species: Archae - 56; Bacteria - 6425; Metazoa - 33620; Fungi - 5335; Plants - 36233; Viruses - 397; Other Eukaryotes - 12997 (source: NCBI BLink).  protein_id AT5G05160.1p  transcript_id AT5G05160.1  protein_id AT5G05160.1p  transcript_id AT5G05160.1  
At5g05170	chr5:001535067	0.0	C/1535067-1535090,1534699-1534894,1534375-1534580,1534179-1534281,1533889-1534066,1533514-1533780,1533068-1533413,1532850-1532987,1532636-1532761,1532342-1532554,1531954-1532215,1531588-1531790,1531141-1531491,1530401-1530985	AT5G05170.1  CDS  gene_syn ATCESA3, ATH-B, CELLULOSE SYNTHASE 3, CESA3, CEV1, CONSTITUTIVE EXPRESSION OF VSP 1, ISOXABEN RESISTANT 1, IXR1, K2A11.4, K2A11_4  gene CEV1  function Encodes a cellulose synthase isomer. CESA3 mutants have cellulose defect in the primary cell wall. Multiple lines of evidence suggest that CESA3, along with CESA1 and CESA6 are present in the same plasma membrane complex for cellulose biosynthesis.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component plasma membrane|GO:0005886|10330464|TAS  go_process defense response|GO:0006952|16255250|TAS  go_process primary cell wall biogenesis|GO:0009833|12068120|IMP  go_process primary cell wall biogenesis|GO:0009833|9165747|TAS  go_process cellulose biosynthetic process|GO:0030244|12068120|IMP  go_process cellulose biosynthetic process|GO:0030244|9445479|IMP  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759|9445479|IMP  go_function cellulose synthase activity|GO:0016759||ISS  product CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1); cellulose synthase/ transferase, transferring glycosyl groups  note CONSTITUTIVE EXPRESSION OF VSP 1 (CEV1); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: primary cell wall biogenesis, cellulose biosynthetic process, defense response; LOCATED IN: Golgi apparatus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: CESA1 (CELLULOSE SYNTHASE 1); cellulose synthase/ transferase, transferring glycosyl groups (TAIR:AT4G32410.1); Has 2369 Blast hits to 1926 proteins in 429 species: Archae - 6; Bacteria - 910; Metazoa - 2; Fungi - 18; Plants - 1366; Viruses - 5; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT5G05170.1p  transcript_id AT5G05170.1  protein_id AT5G05170.1p  transcript_id AT5G05170.1  
At5g05180	chr5:001536924	0.0	W/1536924-1536996,1537093-1537616,1537689-1538318	AT5G05180.2  CDS  gene_syn K2A11.5, K2A11_5  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G10880.1); Has 40700 Blast hits to 21939 proteins in 1140 species: Archae - 545; Bacteria - 3353; Metazoa - 22531; Fungi - 2659; Plants - 1246; Viruses - 88; Other Eukaryotes - 10278 (source: NCBI BLink).  protein_id AT5G05180.2p  transcript_id AT5G05180.2  protein_id AT5G05180.2p  transcript_id AT5G05180.2  
At5g05180	chr5:001536924	0.0	W/1536924-1536996,1537093-1538318	AT5G05180.1  CDS  gene_syn K2A11.5, K2A11_5  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G10880.1); Has 38143 Blast hits to 20610 proteins in 1061 species: Archae - 562; Bacteria - 2945; Metazoa - 21205; Fungi - 2584; Plants - 1248; Viruses - 101; Other Eukaryotes - 9498 (source: NCBI BLink).  protein_id AT5G05180.1p  transcript_id AT5G05180.1  protein_id AT5G05180.1p  transcript_id AT5G05180.1  
At5g05190	chr5:001541853	0.0	W/1541853-1541973,1542149-1543875	AT5G05190.1  CDS  gene_syn K2A11.6, K2A11_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56410.2); Has 4804 Blast hits to 1006 proteins in 190 species: Archae - 0; Bacteria - 237; Metazoa - 900; Fungi - 244; Plants - 143; Viruses - 5; Other Eukaryotes - 3275 (source: NCBI BLink).  protein_id AT5G05190.1p  transcript_id AT5G05190.1  protein_id AT5G05190.1p  transcript_id AT5G05190.1  
At5g05200	chr5:001547029	0.0	C/1547029-1547082,1546778-1546901,1546463-1546605,1546276-1546389,1545908-1546096,1545667-1545822,1545331-1545596,1545138-1545235,1544799-1544977,1544527-1544643,1544206-1544388	AT5G05200.1  CDS  gene_syn K2A11.7, K2A11_7  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_component plastoglobule|GO:0010287|16461379|IDA  product ABC1 family protein  note ABC1 family protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ABC1 family protein (TAIR:AT4G31390.1); Has 7063 Blast hits to 7031 proteins in 1099 species: Archae - 67; Bacteria - 2625; Metazoa - 361; Fungi - 314; Plants - 339; Viruses - 14; Other Eukaryotes - 3343 (source: NCBI BLink).  protein_id AT5G05200.1p  transcript_id AT5G05200.1  protein_id AT5G05200.1p  transcript_id AT5G05200.1  
At5g05210	chr5:001548198	0.0	W/1548198-1548221,1548398-1549534	AT5G05210.1  CDS  gene_syn K2A11.8, K2A11_8  go_component cellular_component|GO:0005575||ND  product nucleolar matrix protein-related  note nucleolar matrix protein-related; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Surfeit locus 6 (InterPro:IPR007019); BEST Arabidopsis thaliana protein match is: nucleolar matrix protein-related (TAIR:AT2G27750.1); Has 28916 Blast hits to 17867 proteins in 915 species: Archae - 105; Bacteria - 2236; Metazoa - 12711; Fungi - 2263; Plants - 727; Viruses - 134; Other Eukaryotes - 10740 (source: NCBI BLink).  protein_id AT5G05210.1p  transcript_id AT5G05210.1  protein_id AT5G05210.1p  transcript_id AT5G05210.1  
At5g05210	chr5:001548398	0.0	W/1548398-1549534	AT5G05210.2  CDS  gene_syn K2A11.8, K2A11_8  go_component cellular_component|GO:0005575||ND  product nucleolar matrix protein-related  note nucleolar matrix protein-related; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Surfeit locus 6 (InterPro:IPR007019); BEST Arabidopsis thaliana protein match is: nucleolar matrix protein-related (TAIR:AT2G27750.1); Has 28913 Blast hits to 17736 proteins in 908 species: Archae - 105; Bacteria - 2243; Metazoa - 12622; Fungi - 2258; Plants - 731; Viruses - 134; Other Eukaryotes - 10820 (source: NCBI BLink).  protein_id AT5G05210.2p  transcript_id AT5G05210.2  protein_id AT5G05210.2p  transcript_id AT5G05210.2  
At5g05220	chr5:001550273	0.0	W/1550273-1550821	AT5G05220.1  CDS  gene_syn K18I23.2, K18I23_2  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: stamen; EXPRESSED DURING: 4 anthesis; Has 17 Blast hits to 10 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G05220.1p  transcript_id AT5G05220.1  protein_id AT5G05220.1p  transcript_id AT5G05220.1  
At5g05230	chr5:001551593	0.0	W/1551593-1551968,1552069-1552264,1552496-1552577,1552670-1552727,1552816-1552904,1552985-1553080,1553188-1553258,1553420-1553543	AT5G05230.1  CDS  gene_syn K18I23.3, K18I23_3  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  product ubiquitin-protein ligase  note ubiquitin-protein ligase; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40640.1); Has 74 Blast hits to 74 proteins in 19 species: Archae - 0; Bacteria - 4; Metazoa - 14; Fungi - 8; Plants - 46; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G05230.1p  transcript_id AT5G05230.1  protein_id AT5G05230.1p  transcript_id AT5G05230.1  
At5g05240	chr5:001556171	0.0	C/1556171-1556230,1555979-1556051,1554876-1555838,1554729-1554791,1554432-1554643,1554225-1554340,1554023-1554128	AT5G05240.1  CDS  gene_syn K18I23.4, K18I23_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP030365 (InterPro:IPR016953); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40630.1); Has 24 Blast hits to 24 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G05240.1p  transcript_id AT5G05240.1  protein_id AT5G05240.1p  transcript_id AT5G05240.1  
At5g05250	chr5:001557116	0.0	C/1557116-1557835	AT5G05250.1  CDS  gene_syn K18I23.5, K18I23_5  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56360.1); Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G05250.1p  transcript_id AT5G05250.1  protein_id AT5G05250.1p  transcript_id AT5G05250.1  
At5g05260	chr5:001560821	0.0	C/1560821-1561765,1559778-1560404	AT5G05260.1  CDS  gene_syn CYP79A2, CYTOCHROME P450 79A2, K18I23.6, K18I23_6  gene CYP79A2  function Encodes cytochrome P450 CYP79A2.  go_process glucosinolate biosynthetic process|GO:0019761|10799553|IMP  go_process glucosinolate biosynthetic process|GO:0019761|10799553|TAS  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen|GO:0016709|10799553|IDA  go_function oxygen binding|GO:0019825|10799553|TAS  product CYP79A2 (CYTOCHROME P450 79A2); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen / oxygen binding  note CYTOCHROME P450 79A2 (CYP79A2); FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, oxygen binding; INVOLVED IN: glucosinolate biosynthetic process; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP79A3P; electron carrier/ heme binding / iron ion binding / monooxygenase (TAIR:AT5G35917.1); Has 21248 Blast hits to 21153 proteins in 1176 species: Archae - 18; Bacteria - 1674; Metazoa - 9804; Fungi - 3642; Plants - 5350; Viruses - 3; Other Eukaryotes - 757 (source: NCBI BLink).  protein_id AT5G05260.1p  transcript_id AT5G05260.1  protein_id AT5G05260.1p  transcript_id AT5G05260.1  
At5g05270	chr5:001563492	0.0	W/1563492-1563492,1563644-1563727,1563837-1563995,1564217-1564443,1564669-1564827	AT5G05270.1  CDS  gene_syn K18I23.7, K18I23_7  go_process flavonoid biosynthetic process|GO:0009813||IEA  go_function chalcone isomerase activity|GO:0045430||IEA  go_component cellular_component|GO:0005575||ND  product chalcone-flavanone isomerase family protein  note chalcone-flavanone isomerase family protein; FUNCTIONS IN: chalcone isomerase activity; INVOLVED IN: flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone isomerase, subgroup (InterPro:IPR003466), Chalcone isomerase, 3-layer sandwich (InterPro:IPR016088), Chalcone isomerase (InterPro:IPR016087); Has 288 Blast hits to 288 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 288; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G05270.1p  transcript_id AT5G05270.1  protein_id AT5G05270.1p  transcript_id AT5G05270.1  
At5g05270	chr5:001563543	0.0	W/1563543-1563543,1563644-1563727,1563837-1563995,1564217-1564443,1564669-1564827	AT5G05270.2  CDS  gene_syn K18I23.7, K18I23_7  go_process flavonoid biosynthetic process|GO:0009813||IEA  go_function chalcone isomerase activity|GO:0045430||IEA  go_component cellular_component|GO:0005575||ND  product chalcone-flavanone isomerase family protein  note chalcone-flavanone isomerase family protein; FUNCTIONS IN: chalcone isomerase activity; INVOLVED IN: flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone isomerase, subgroup (InterPro:IPR003466), Chalcone isomerase, 3-layer sandwich (InterPro:IPR016088), Chalcone isomerase (InterPro:IPR016087); Has 288 Blast hits to 288 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 288; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G05270.2p  transcript_id AT5G05270.2  protein_id AT5G05270.2p  transcript_id AT5G05270.2  
At5g05280	chr5:001565509	0.0	C/1565509-1566039	AT5G05280.1  CDS  gene_syn K18I23.8, K18I23_8  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G10910.1); Has 5991 Blast hits to 5977 proteins in 217 species: Archae - 0; Bacteria - 6; Metazoa - 2021; Fungi - 420; Plants - 2597; Viruses - 39; Other Eukaryotes - 908 (source: NCBI BLink).  protein_id AT5G05280.1p  transcript_id AT5G05280.1  protein_id AT5G05280.1p  transcript_id AT5G05280.1  
At5g05282	chr5:001566118	0.0	C/1566118-1566186	AT5G05282.1  CDS  gene_syn CPuORF64, Conserved peptide upstream open reading frame 64  gene CPuORF64  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF64 represents a conserved upstream opening reading frame relative to major ORF AT5G05280.1  product CPuORF64 (Conserved peptide upstream open reading frame 64)  note Conserved peptide upstream open reading frame 64 (CPuORF64); Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G05282.1p  transcript_id AT5G05282.1  protein_id AT5G05282.1p  transcript_id AT5G05282.1  
At5g05290	chr5:001568752	0.0	W/1568752-1568899,1568995-1569307,1569406-1569712	AT5G05290.1  CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN A2, ATEXP2, ATEXPA2, ATHEXP ALPHA 1.12, EXP2, EXPANSIN 2, K18I23.9, K18I23_9  gene ATEXPA2  function Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828||ISS  go_process plant-type cell wall modification during multidimensional cell growth|GO:0009831|7568110|TAS  product ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2)  note ARABIDOPSIS THALIANA EXPANSIN A2 (ATEXPA2); INVOLVED IN: plant-type cell wall modification during multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8) (TAIR:AT2G40610.1); Has 1508 Blast hits to 1507 proteins in 154 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 33; Plants - 1428; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT5G05290.1p  transcript_id AT5G05290.1  protein_id AT5G05290.1p  transcript_id AT5G05290.1  
At5g05300	chr5:001570102	0.0	C/1570102-1570410	AT5G05300.1  CDS  gene_syn K18I23.10, K18I23_10  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 8 growth stages; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G05300.1p  transcript_id AT5G05300.1  protein_id AT5G05300.1p  transcript_id AT5G05300.1  
At5g05310	chr5:001571271	0.0	W/1571271-1571372,1571458-1571622,1571703-1571792,1571875-1571985,1572081-1572144,1572221-1572322,1572453-1572555,1572817-1573039,1573445-1573558,1573645-1573776,1573854-1573934,1574042-1574158,1574255-1574323,1574396-1574458	AT5G05310.3  CDS  gene_syn K18I23.11, K18I23_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 533 Blast hits to 527 proteins in 89 species: Archae - 0; Bacteria - 190; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 318 (source: NCBI BLink).  protein_id AT5G05310.3p  transcript_id AT5G05310.3  protein_id AT5G05310.3p  transcript_id AT5G05310.3  
At5g05310	chr5:001571271	0.0	W/1571271-1571372,1571458-1571622,1571703-1571792,1571875-1571985,1572081-1572144,1572221-1572322,1572453-1572555,1572817-1573039,1573445-1573558,1573645-1573776,1573854-1573934,1574042-1574164	AT5G05310.1  CDS  gene_syn K18I23.11, K18I23_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 475 Blast hits to 469 proteins in 77 species: Archae - 0; Bacteria - 146; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 306 (source: NCBI BLink).  protein_id AT5G05310.1p  transcript_id AT5G05310.1  protein_id AT5G05310.1p  transcript_id AT5G05310.1  
At5g05310	chr5:001571271	0.0	W/1571271-1571372,1571458-1571622,1571703-1571792,1571875-1571985,1572081-1572149,1572226-1572322,1572453-1572555,1572817-1573039,1573445-1573558,1573645-1573776,1573854-1573934,1574042-1574158,1574255-1574341	AT5G05310.2  CDS  gene_syn K18I23.11, K18I23_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 540 Blast hits to 534 proteins in 89 species: Archae - 0; Bacteria - 184; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 331 (source: NCBI BLink).  protein_id AT5G05310.2p  transcript_id AT5G05310.2  protein_id AT5G05310.2p  transcript_id AT5G05310.2  
At5g05320	chr5:001576600	0.0	C/1576600-1576679,1576389-1576535,1576253-1576315,1576001-1576163,1575699-1575927,1575093-1575631	AT5G05320.1  CDS  gene_syn K18I23.12, K18I23_12  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function monooxygenase activity|GO:0004497||ISS  product monooxygenase, putative (MO3)  note monooxygenase, putative (MO3); FUNCTIONS IN: monooxygenase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Aromatic-ring hydroxylase-like (InterPro:IPR003042), Monooxygenase, FAD-binding (InterPro:IPR002938); BEST Arabidopsis thaliana protein match is: monooxygenase, putative (MO2) (TAIR:AT4G38540.1); Has 3563 Blast hits to 3548 proteins in 650 species: Archae - 42; Bacteria - 1804; Metazoa - 7; Fungi - 839; Plants - 277; Viruses - 0; Other Eukaryotes - 594 (source: NCBI BLink).  protein_id AT5G05320.1p  transcript_id AT5G05320.1  protein_id AT5G05320.1p  transcript_id AT5G05320.1  
At5g05330	chr5:001578307	0.0	C/1578307-1578461,1577962-1578046,1577788-1577874,1577569-1577613,1577397-1577470,1577289-1577316	AT5G05330.2  CDS  gene_syn K18I23.13, K18I23_13  function Encodes a protein with a putative HMG-box domain. The high-mobility group (HMG) proteins are chromatin-associated proteins that act as architectural factors in various nucleoprotein structures, which regulate DNA-dependent processes such as transcription and recombination. Expression of this gene was not detected according to Grasser et al. (J. Mol. Biol. 2006:358, 654-664).  go_component nucleus|GO:0005634||IEA  go_function DNA binding|GO:0003677||IEA  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: HMGB6; transcription factor (TAIR:AT5G23420.1); Has 22 Blast hits to 22 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G05330.2p  transcript_id AT5G05330.2  protein_id AT5G05330.2p  transcript_id AT5G05330.2  
At5g05330	chr5:001578578	0.0	C/1578578-1578599,1578307-1578472,1577962-1578046,1577788-1577874,1577569-1577613,1577397-1577470,1577289-1577316	AT5G05330.3  CDS  gene_syn K18I23.13, K18I23_13  function Encodes a protein with a putative HMG-box domain. The high-mobility group (HMG) proteins are chromatin-associated proteins that act as architectural factors in various nucleoprotein structures, which regulate DNA-dependent processes such as transcription and recombination. Expression of this gene was not detected according to Grasser et al. (J. Mol. Biol. 2006:358, 654-664).  go_component nucleus|GO:0005634||IEA  go_function DNA binding|GO:0003677||IEA  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: HMGB6; transcription factor (TAIR:AT5G23420.1); Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G05330.3p  transcript_id AT5G05330.3  protein_id AT5G05330.3p  transcript_id AT5G05330.3  
At5g05330	chr5:001578578	0.0	C/1578578-1578750,1578307-1578477,1577962-1578046,1577788-1577874,1577569-1577613,1577397-1577470,1577289-1577316	AT5G05330.1  CDS  gene_syn K18I23.13, K18I23_13  function Encodes a protein with a putative HMG-box domain. The high-mobility group (HMG) proteins are chromatin-associated proteins that act as architectural factors in various nucleoprotein structures, which regulate DNA-dependent processes such as transcription and recombination. Expression of this gene was not detected according to Grasser et al. (J. Mol. Biol. 2006:358, 654-664).  go_component nucleus|GO:0005634||IEA  go_function DNA binding|GO:0003677||IEA  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: HMGB6; transcription factor (TAIR:AT5G23420.1); Has 37 Blast hits to 37 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G05330.1p  transcript_id AT5G05330.1  protein_id AT5G05330.1p  transcript_id AT5G05330.1  
At5g05340	chr5:001580595	0.0	C/1580595-1580819,1580293-1580484,1580038-1580203,1579142-1579533	AT5G05340.1  CDS  gene_syn K18I23.14, K18I23_14  go_component cell wall|GO:0005618|14595688|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT5G58400.1); Has 2945 Blast hits to 2930 proteins in 223 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 110; Plants - 2778; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT5G05340.1p  transcript_id AT5G05340.1  protein_id AT5G05340.1p  transcript_id AT5G05340.1  
At5g05350	chr5:001585757	0.0	W/1585757-1587337	AT5G05350.1  CDS  gene_syn K18I23.15, K18I23_15  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G10980.1); Has 81 Blast hits to 75 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 7; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G05350.1p  transcript_id AT5G05350.1  protein_id AT5G05350.1p  transcript_id AT5G05350.1  
At5g05360	chr5:001588356	0.0	W/1588356-1588733,1588961-1589030,1589135-1589178	AT5G05360.1  CDS  gene_syn K18I23.16, K18I23_16  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38450.1); Has 42 Blast hits to 42 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G05360.1p  transcript_id AT5G05360.1  protein_id AT5G05360.1p  transcript_id AT5G05360.1  
At5g05360	chr5:001588356	0.0	W/1588356-1588733,1588961-1589044	AT5G05360.2  CDS  gene_syn K18I23.16, K18I23_16  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38450.1); Has 42 Blast hits to 42 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G05360.2p  transcript_id AT5G05360.2  protein_id AT5G05360.2p  transcript_id AT5G05360.2  
At5g05365	chr5:001590125	0.0	W/1590125-1590133,1590350-1590425,1590524-1590672	AT5G05365.1  CDS  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  product metal ion binding  note metal ion binding; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT5G19090.3); Has 474 Blast hits to 472 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 5; Plants - 468; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G05365.1p  transcript_id AT5G05365.1  protein_id AT5G05365.1p  transcript_id AT5G05365.1  
At5g05370	chr5:001591700	0.0	C/1591700-1591869,1590977-1591025	AT5G05370.1  CDS  gene_syn K18I23.18, K18I23_18  go_component mitochondrial respiratory chain complex III|GO:0005750|18189341|IDA  go_function ubiquinol-cytochrome-c reductase activity|GO:0008121||ISS  product ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative  note ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative; FUNCTIONS IN: ubiquinol-cytochrome-c reductase activity; LOCATED IN: mitochondrial respiratory chain complex III; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative (TAIR:AT3G10860.1); Has 46 Blast hits to 46 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G05370.1p  transcript_id AT5G05370.1  protein_id AT5G05370.1p  transcript_id AT5G05370.1  
At5g05380	chr5:001592214	0.0	W/1592214-1592867	AT5G05380.1  CDS  gene_syn K18I23.19, K18I23_19, PRA1.B3, PRENYLATED RAB ACCEPTOR 1.B3  gene PRA1.B3  go_component endoplasmic reticulum|GO:0005783|18583532|IDA  go_process vesicle-mediated transport|GO:0016192|18583532|IDA  go_function molecular_function|GO:0003674||ND  product PRA1.B3 (PRENYLATED RAB ACCEPTOR 1.B3)  note PRENYLATED RAB ACCEPTOR 1.B3 (PRA1.B3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: PRA1.B1 (PRENYLATED RAB ACCEPTOR 1.B1) (TAIR:AT3G56110.1); Has 371 Blast hits to 371 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 59; Plants - 178; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT5G05380.1p  transcript_id AT5G05380.1  protein_id AT5G05380.1p  transcript_id AT5G05380.1  
At5g05390	chr5:001594753	0.0	W/1594753-1594848,1594955-1595106,1595328-1595572,1595671-1595799,1595878-1596822,1596912-1597042	AT5G05390.1  CDS  gene_syn K18I23.20, K18I23_20, LAC12, laccase 12  gene LAC12  function putative laccase, a member of laccase family of genes (17 members in Arabidopsis).  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process lignin catabolic process|GO:0046274||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function laccase activity|GO:0008471|15940465|ISS  product LAC12 (laccase 12); laccase  note laccase 12 (LAC12); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: LAC5 (laccase 5); laccase (TAIR:AT2G40370.1); Has 7241 Blast hits to 6145 proteins in 983 species: Archae - 23; Bacteria - 2967; Metazoa - 407; Fungi - 2547; Plants - 911; Viruses - 0; Other Eukaryotes - 386 (source: NCBI BLink).  protein_id AT5G05390.1p  transcript_id AT5G05390.1  protein_id AT5G05390.1p  transcript_id AT5G05390.1  
At5g05400	chr5:001597745	0.0	C/1597745-1600369	AT5G05400.1  CDS  gene_syn K18I23.21, K18I23_21  go_component chloroplast|GO:0009507||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative  note disease resistance protein (CC-NBS-LRR class), putative; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response, apoptosis; LOCATED IN: chloroplast; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT5G63020.1); Has 10104 Blast hits to 9651 proteins in 446 species: Archae - 14; Bacteria - 587; Metazoa - 1324; Fungi - 71; Plants - 7965; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).  protein_id AT5G05400.1p  transcript_id AT5G05400.1  protein_id AT5G05400.1p  transcript_id AT5G05400.1  
At5g05410	chr5:001602650	0.0	W/1602650-1603376,1603476-1603657	AT5G05410.2  CDS  gene_syn DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DREB2, DREB2A, K18I23.22, K18I23_22  gene DREB2A  function Encodes a transcription factor that specifically binds to DRE/CRT cis elements (responsive to drought and low-temperature stress). Belongs to the DREB subfamily A-2 of ERF/AP2 transcription factor family (DREB2A). There are eight members in this subfamily including DREB2B. The protein contains one AP2 domain. Overexpression of transcriptional activation domain of DREB2A resulted in significant drought stress tolerance but only slight freezing tolerance in transgenic Arabidopsis plants. Microarray and RNA gel blot analyses revealed that DREB2A regulates expression of many water stress inducible genes.  go_component nucleus|GO:0005634|16617101|IDA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to heat|GO:0009408|17030801|IMP  go_process response to water deprivation|GO:0009414|10809011|IEP  go_process response to water deprivation|GO:0009414|10809011|TAS  go_process response to water deprivation|GO:0009414|16617101|IMP  go_process response to salt stress|GO:0009651|10809011|IEP  go_process response to UV-B|GO:0010224|14739338|IGI  go_process response to UV-B|GO:0010224|18266923|IEP  go_process heat acclimation|GO:0010286|16807682|IEP  go_process response to hydrogen peroxide|GO:0042542|17030801|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9707537|IDA  go_function transcription factor activity|GO:0003700||ISS  go_function transcription activator activity|GO:0016563|9707537|TAS  product DREB2A; DNA binding / transcription activator/ transcription factor  note DREB2A; FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: DREB2B (DRE/CRT-BINDING PROTEIN 2B); DNA binding / transcription activator/ transcription factor (TAIR:AT3G11020.1); Has 3538 Blast hits to 3521 proteins in 199 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 3524; Viruses - 2; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G05410.2p  transcript_id AT5G05410.2  protein_id AT5G05410.2p  transcript_id AT5G05410.2  
At5g05410	chr5:001602650	0.0	W/1602650-1603657	AT5G05410.1  CDS  gene_syn DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DREB2, DREB2A, K18I23.22, K18I23_22  gene DREB2A  function Encodes a transcription factor that specifically binds to DRE/CRT cis elements (responsive to drought and low-temperature stress). Belongs to the DREB subfamily A-2 of ERF/AP2 transcription factor family (DREB2A). There are eight members in this subfamily including DREB2B. The protein contains one AP2 domain. Overexpression of transcriptional activation domain of DREB2A resulted in significant drought stress tolerance but only slight freezing tolerance in transgenic Arabidopsis plants. Microarray and RNA gel blot analyses revealed that DREB2A regulates expression of many water stress inducible genes.  go_component nucleus|GO:0005634|16617101|IDA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to heat|GO:0009408|17030801|IMP  go_process response to water deprivation|GO:0009414|10809011|IEP  go_process response to water deprivation|GO:0009414|10809011|TAS  go_process response to water deprivation|GO:0009414|16617101|IMP  go_process response to salt stress|GO:0009651|10809011|IEP  go_process response to UV-B|GO:0010224|14739338|IGI  go_process response to UV-B|GO:0010224|18266923|IEP  go_process heat acclimation|GO:0010286|16807682|IEP  go_process response to hydrogen peroxide|GO:0042542|17030801|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9707537|IDA  go_function transcription factor activity|GO:0003700||ISS  go_function transcription activator activity|GO:0016563|9707537|TAS  product DREB2A; DNA binding / transcription activator/ transcription factor  note DREB2A; FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: DREB2B (DRE/CRT-BINDING PROTEIN 2B); DNA binding / transcription activator/ transcription factor (TAIR:AT3G11020.1); Has 3539 Blast hits to 3522 proteins in 199 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 3525; Viruses - 2; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G05410.1p  transcript_id AT5G05410.1  protein_id AT5G05410.1p  transcript_id AT5G05410.1  
At5g05420	chr5:001604650	0.0	C/1604650-1604823,1604483-1604570,1604352-1604393,1604215-1604263,1604040-1604118	AT5G05420.1  CDS  gene_syn K18I23.23, K18I23_23  go_process protein folding|GO:0006457||IEA  go_component chloroplast thylakoid lumen|GO:0009543||ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  go_function FK506 binding|GO:0005528||ISS  product immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative  note immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: chloroplast thylakoid lumen; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: immunophilin-related / FKBP-type peptidyl-prolyl cis-trans isomerase-related (TAIR:AT4G25340.1); Has 6445 Blast hits to 6024 proteins in 1030 species: Archae - 66; Bacteria - 2750; Metazoa - 1468; Fungi - 355; Plants - 457; Viruses - 0; Other Eukaryotes - 1349 (source: NCBI BLink).  protein_id AT5G05420.1p  transcript_id AT5G05420.1  protein_id AT5G05420.1p  transcript_id AT5G05420.1  
At5g05435	chr5:001606552	0.0	W/1606552-1607656	AT5G05435.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT5G05430  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G05435.1  
At5g05430	chr5:001606645	0.0	C/1606645-1606703,1605734-1605997,1605275-1605428	AT5G05430.1  CDS  gene_syn K18I23.24, K18I23_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, leaf; EXPRESSED DURING: LP.04 four leaves visible; BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT3G09160.1); Has 23 Blast hits to 21 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G05430.1p  transcript_id AT5G05430.1  protein_id AT5G05430.1p  transcript_id AT5G05430.1  
At5g05440	chr5:001609374	0.0	W/1609374-1609985	AT5G05440.1  CDS  gene_syn K18I23.25, K18I23_25  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38310.1); Has 240 Blast hits to 240 proteins in 41 species: Archae - 0; Bacteria - 35; Metazoa - 0; Fungi - 0; Plants - 204; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G05440.1p  transcript_id AT5G05440.1  protein_id AT5G05440.1p  transcript_id AT5G05440.1  
At5g05450	chr5:001612077	0.0	W/1612077-1612346,1612424-1612660,1612791-1613039,1613365-1613444,1613517-1613622,1613713-1613826,1613913-1614011,1614105-1614194,1614296-1614402,1614510-1614653,1614910-1615195	AT5G05450.1  CDS  gene_syn K18I23.26, K18I23_26  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD/DEAH box helicase, putative (RH18)  note DEAD/DEAH box helicase, putative (RH18); FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (TAIR:AT1G71370.1); Has 26025 Blast hits to 25450 proteins in 1685 species: Archae - 410; Bacteria - 10515; Metazoa - 4736; Fungi - 3110; Plants - 1301; Viruses - 7; Other Eukaryotes - 5946 (source: NCBI BLink).  protein_id AT5G05450.1p  transcript_id AT5G05450.1  protein_id AT5G05450.1p  transcript_id AT5G05450.1  
At5g05460	chr5:001615615	0.0	W/1615615-1615992,1616241-1616378,1616464-1616573,1616661-1616772,1616864-1616971,1617073-1617185,1617264-1617345,1617443-1617523,1617651-1617706,1617813-1617948,1618043-1618771	AT5G05460.1  CDS  gene_syn K18I23.27, K18I23_27  go_component cytoplasm|GO:0005737||IEA  go_component chloroplast|GO:0009507||IEA  go_function mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity|GO:0033925||IEA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product hydrolase, acting on glycosyl bonds / mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase  note hydrolase, acting on glycosyl bonds / mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 85 (InterPro:IPR005201), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 85 protein (TAIR:AT3G11040.1); Has 288 Blast hits to 282 proteins in 125 species: Archae - 0; Bacteria - 121; Metazoa - 98; Fungi - 18; Plants - 23; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT5G05460.1p  transcript_id AT5G05460.1  protein_id AT5G05460.1p  transcript_id AT5G05460.1  
At5g05470	chr5:001620579	0.0	W/1620579-1620962,1621075-1621131,1621228-1621314,1621399-1621545,1621646-1621750,1621858-1621956,1622059-1622214	AT5G05470.1  CDS  gene_syn EIF2 ALPHA, ateif2-a2, eif2-a2  gene EIF2 ALPHA  function protein synthesis initiation factor eIF2 alpha  go_component eukaryotic translation initiation factor 2 complex|GO:0005850||IEA  go_process translation|GO:0006412||IEA  go_function RNA binding|GO:0003723||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product EIF2 ALPHA; RNA binding / translation initiation factor  note EIF2 ALPHA; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translation; LOCATED IN: eukaryotic translation initiation factor 2 complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), S1, RNA binding (InterPro:IPR003029), Eukaryotic translation initiation factor 2, alpha subunit (InterPro:IPR011488); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative (TAIR:AT2G40290.1); Has 2950 Blast hits to 2854 proteins in 1042 species: Archae - 145; Bacteria - 1862; Metazoa - 147; Fungi - 90; Plants - 62; Viruses - 31; Other Eukaryotes - 613 (source: NCBI BLink).  protein_id AT5G05470.1p  transcript_id AT5G05470.1  protein_id AT5G05470.1p  transcript_id AT5G05470.1  
At5g05480	chr5:001622338	0.0	C/1622338-1624164	AT5G05480.1  CDS  gene_syn MOP10.2, MOP10_2  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14920.1); Has 138 Blast hits to 128 proteins in 53 species: Archae - 12; Bacteria - 7; Metazoa - 0; Fungi - 66; Plants - 50; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G05480.1p  transcript_id AT5G05480.1  protein_id AT5G05480.1p  transcript_id AT5G05480.1  
At5g05490	chr5:001624325	0.0	W/1624325-1624372,1624730-1624764,1624995-1625063,1625189-1625247,1625327-1625371,1625485-1625504,1625608-1625684,1625819-1625936,1626433-1626499,1626588-1626666,1626850-1626962,1627231-1627328,1627400-1627549,1627629-1627776,1627856-1627938,1628034-1628205,1628300-1628381,1628488-1628627,1628712-1628796,1628869-1628981,1629062-1629144	AT5G05490.1  CDS  gene_syn ATREC8, BP2, DETERMINATE, INFERTILE 1, DIF1, MOP10.3, MOP10_3, REC8, SYN1, SYNAPTIC 1  gene SYN1  function Encodes a RAD21-like gene essential for meiosis. Encodes a 627 a.a. protein that is slightly longer in the N-terminus than SYN1 BP5.  go_component chromosome|GO:0005694|16176934|IDA  go_component cohesin complex|GO:0008278|11276426|ISS  go_process establishment or maintenance of chromatin architecture|GO:0006325|16176934|IMP  go_process sister chromatid cohesion|GO:0007062|10072401|IMP  go_process meiotic chromosome condensation|GO:0010032|10072401|IMP  go_process attachment of spindle microtubules to kinetochore during meiosis I|GO:0051455|16176934|IMP  go_process meiotic sister chromatid cohesion, centromeric|GO:0051754|16176934|IMP  go_function molecular_function|GO:0003674||ND  product SYN1 (SYNAPTIC 1)  note SYNAPTIC 1 (SYN1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: establishment or maintenance of chromatin architecture, attachment of spindle microtubules to kinetochore during meiosis I, sister chromatid cohesion, meiotic sister chromatid cohesion, centromeric, meiotic chromosome condensation; LOCATED IN: cohesin complex, chromosome; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, D bilateral stage; CONTAINS InterPro DOMAIN/s: Rad21/Rec8 like protein, C-terminal (InterPro:IPR006909), Rad21/Rec8 like protein, N-terminal (InterPro:IPR006910); BEST Arabidopsis thaliana protein match is: SYN4 (SISTER CHROMATID COHESION 1 PROTEIN 4) (TAIR:AT5G16270.1); Has 461 Blast hits to 450 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 188; Fungi - 147; Plants - 89; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT5G05490.1p  transcript_id AT5G05490.1  protein_id AT5G05490.1p  transcript_id AT5G05490.1  
At5g05490	chr5:001624712	0.0	W/1624712-1624764,1624995-1625063,1625189-1625247,1625327-1625371,1625485-1625504,1625608-1625684,1625819-1625936,1626433-1626499,1626588-1626666,1626850-1626962,1627231-1627328,1627400-1627549,1627629-1627776,1627856-1627938,1628034-1628205,1628300-1628381,1628488-1628627,1628712-1628796,1628869-1628981,1629062-1629144	AT5G05490.2  CDS  gene_syn ATREC8, BP2, DETERMINATE, INFERTILE 1, DIF1, MOP10.3, MOP10_3, REC8, SYN1, SYNAPTIC 1  gene SYN1  function Encodes a RAD21-like gene essential for meiosis. Encodes a 627 a.a. protein that is slightly longer in the N-terminus than SYN1 BP5.  go_component chromosome|GO:0005694|16176934|IDA  go_component cohesin complex|GO:0008278|11276426|ISS  go_process establishment or maintenance of chromatin architecture|GO:0006325|16176934|IMP  go_process sister chromatid cohesion|GO:0007062|10072401|IMP  go_process meiotic chromosome condensation|GO:0010032|10072401|IMP  go_process attachment of spindle microtubules to kinetochore during meiosis I|GO:0051455|16176934|IMP  go_process meiotic sister chromatid cohesion, centromeric|GO:0051754|16176934|IMP  go_function molecular_function|GO:0003674||ND  product SYN1 (SYNAPTIC 1)  note SYNAPTIC 1 (SYN1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: establishment or maintenance of chromatin architecture, attachment of spindle microtubules to kinetochore during meiosis I, sister chromatid cohesion, meiotic sister chromatid cohesion, centromeric, meiotic chromosome condensation; LOCATED IN: cohesin complex, chromosome; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, D bilateral stage; CONTAINS InterPro DOMAIN/s: Rad21/Rec8 like protein, C-terminal (InterPro:IPR006909), Rad21/Rec8 like protein, N-terminal (InterPro:IPR006910); BEST Arabidopsis thaliana protein match is: SYN4 (SISTER CHROMATID COHESION 1 PROTEIN 4) (TAIR:AT5G16270.1); Has 475 Blast hits to 464 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 200; Fungi - 147; Plants - 91; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT5G05490.2p  transcript_id AT5G05490.2  protein_id AT5G05490.2p  transcript_id AT5G05490.2  
At5g05500	chr5:001629716	0.0	W/1629716-1630267	AT5G05500.1  CDS  gene_syn MOP10.4, MOP10_4  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pollen Ole e 1 allergen and extensin family protein  note pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen and extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: AGP30 (ARABINOGALACTAN PROTEIN30) (TAIR:AT2G33790.1); Has 127 Blast hits to 127 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G05500.1p  transcript_id AT5G05500.1  protein_id AT5G05500.1p  transcript_id AT5G05500.1  
At5g05510	chr5:001632471	0.0	C/1632471-1632568,1632190-1632334,1631931-1632088,1631664-1631748,1630651-1631580	AT5G05510.1  CDS  gene_syn MOP10.5, MOP10_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product protein kinase-related  note protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Mitotic checkpoint serine/threonine protein kinase, Bub1 (InterPro:IPR015661), Mad3/BUB1 homology region 1 (InterPro:IPR013212); BEST Arabidopsis thaliana protein match is: spindle checkpoint protein-related (TAIR:AT2G33560.1); Has 390 Blast hits to 367 proteins in 106 species: Archae - 0; Bacteria - 2; Metazoa - 194; Fungi - 98; Plants - 63; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT5G05510.1p  transcript_id AT5G05510.1  protein_id AT5G05510.1p  transcript_id AT5G05510.1  
At5g05520	chr5:001632912	0.0	W/1632912-1633412,1633650-1634135,1634408-1634911,1635021-1635104	AT5G05520.1  CDS  gene_syn MOP10.6, MOP10_6  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product outer membrane OMP85 family protein  note outer membrane OMP85 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial surface antigen (D15) (InterPro:IPR000184), Surface antigen variable number (InterPro:IPR010827); BEST Arabidopsis thaliana protein match is: outer membrane OMP85 family protein (TAIR:AT3G11070.1); Has 1168 Blast hits to 1166 proteins in 370 species: Archae - 0; Bacteria - 488; Metazoa - 132; Fungi - 88; Plants - 38; Viruses - 4; Other Eukaryotes - 418 (source: NCBI BLink).  protein_id AT5G05520.1p  transcript_id AT5G05520.1  protein_id AT5G05520.1p  transcript_id AT5G05520.1  
At5g05530	chr5:001635492	0.0	W/1635492-1636091	AT5G05530.1  CDS  gene_syn MOP10.7, MOP10_7  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G18110.1); Has 3566 Blast hits to 3558 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 887; Fungi - 270; Plants - 1714; Viruses - 46; Other Eukaryotes - 649 (source: NCBI BLink).  protein_id AT5G05530.1p  transcript_id AT5G05530.1  protein_id AT5G05530.1p  transcript_id AT5G05530.1  
At5g05540	chr5:001636419	0.0	W/1636419-1636451,1636554-1636739,1636827-1636907,1636998-1637066,1637148-1637288,1637359-1637475,1637570-1637639,1637718-1637833,1637931-1638062,1638143-1638250,1638337-1638441,1638517-1638759	AT5G05540.1  CDS  gene_syn MOP10.8, MOP10_8, SDN2, SMALL RNA DEGRADING NUCLEASE 2  gene SDN2  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function exonuclease activity|GO:0004527||IEA  go_component intracellular|GO:0005622||ISS  go_function exonuclease activity|GO:0004527||ISS  product SDN2 (SMALL RNA DEGRADING NUCLEASE 2); exonuclease/ nucleic acid binding  note SMALL RNA DEGRADING NUCLEASE 2 (SDN2); FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T and DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: SDN3 (SMALL RNA DEGRADING NUCLEASE 3); exonuclease/ nucleic acid binding (TAIR:AT5G67240.1); Has 1287 Blast hits to 1276 proteins in 177 species: Archae - 0; Bacteria - 12; Metazoa - 608; Fungi - 388; Plants - 159; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).  protein_id AT5G05540.1p  transcript_id AT5G05540.1  protein_id AT5G05540.1p  transcript_id AT5G05540.1  
At5g05540	chr5:001636419	0.0	W/1636419-1636451,1636554-1636739,1636827-1636907,1636998-1637066,1637148-1637288,1637359-1637475,1637570-1637639,1637718-1637833,1637931-1638062,1638143-1638256	AT5G05540.2  CDS  gene_syn MOP10.8, MOP10_8, SDN2, SMALL RNA DEGRADING NUCLEASE 2  gene SDN2  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function exonuclease activity|GO:0004527||IEA  go_component intracellular|GO:0005622||ISS  go_function exonuclease activity|GO:0004527||ISS  product SDN2 (SMALL RNA DEGRADING NUCLEASE 2); exonuclease/ nucleic acid binding  note SMALL RNA DEGRADING NUCLEASE 2 (SDN2); FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T and DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: SDN1 (SMALL RNA DEGRADING NUCLEASE 1); 3 -5  exonuclease/ exonuclease (TAIR:AT3G50100.1); Has 1264 Blast hits to 1263 proteins in 177 species: Archae - 0; Bacteria - 12; Metazoa - 592; Fungi - 390; Plants - 151; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT5G05540.2p  transcript_id AT5G05540.2  protein_id AT5G05540.2p  transcript_id AT5G05540.2  
At5g05550	chr5:001639824	0.0	C/1639824-1640550,1639344-1639357	AT5G05550.1  CDS  gene_syn MOP10.9, MOP10_9  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT3G11100.1); Has 203 Blast hits to 195 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 193; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G05550.1p  transcript_id AT5G05550.1  protein_id AT5G05550.1p  transcript_id AT5G05550.1  
At5g05550	chr5:001639824	0.0	C/1639824-1640550,1639529-1639551	AT5G05550.2  CDS  gene_syn MOP10.9, MOP10_9  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT3G11100.1); Has 203 Blast hits to 195 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 193; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G05550.2p  transcript_id AT5G05550.2  protein_id AT5G05550.2p  transcript_id AT5G05550.2  
At5g05560	chr5:001641452	0.0	W/1641452-1641660,1641778-1641835,1642204-1642288,1642719-1643005,1643188-1643293,1643376-1643536,1643668-1643852,1643966-1644035,1644123-1644293,1644467-1644936,1645332-1645791,1645992-1646324,1646807-1646890,1647436-1647495,1647759-1647857,1648052-1648192,1648629-1648709,1649087-1649158,1649611-1649682,1650314-1650407,1650488-1650561,1650672-1650722,1650840-1650917,1651031-1651152,1651232-1651392,1651472-1651548,1651667-1651780,1651866-1651967,1652388-1652528,1652758-1652931,1653210-1653263,1653606-1653763,1654253-1654685	AT5G05560.1  CDS  gene_syn EMB2771, EMBRYO DEFECTIVE 2771, MOP10.10, MOP10_10  gene EMB2771  function Arabidopsis thaliana E3 ubiquitin ligase  go_component ubiquitin ligase complex|GO:0000151|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product EMB2771 (EMBRYO DEFECTIVE 2771); ubiquitin-protein ligase  note EMBRYO DEFECTIVE 2771 (EMB2771); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome/cyclosome, regulatory subunit (InterPro:IPR002015); Has 285 Blast hits to 257 proteins in 128 species: Archae - 0; Bacteria - 0; Metazoa - 109; Fungi - 97; Plants - 31; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT5G05560.1p  transcript_id AT5G05560.1  protein_id AT5G05560.1p  transcript_id AT5G05560.1  
At5g05570	chr5:001656766	0.0	W/1656766-1656840,1657343-1657458,1657667-1657751,1658125-1658178,1658302-1658393,1658487-1658590,1658857-1658932,1659419-1659848,1660073-1660405,1660479-1660679,1660792-1660890,1660979-1661254,1661364-1661649,1661726-1661961,1662048-1662172,1662298-1662415,1662567-1662622,1662720-1662813,1662890-1663064,1663134-1663202,1663276-1663379,1663461-1663523,1663621-1663728	AT5G05570.1  CDS  gene_syn MOP10.11, MOP10_11  go_component plasma membrane|GO:0005886|17317660|IDA  go_process vesicle-mediated transport|GO:0016192||IEA  go_process methylation|GO:0032259||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: methyltransferase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: vesicle-mediated transport, methylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), N-6 adenine-specific DNA methylase, conserved site (InterPro:IPR002052), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35560.1); Has 565 Blast hits to 464 proteins in 112 species: Archae - 0; Bacteria - 9; Metazoa - 407; Fungi - 84; Plants - 40; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT5G05570.1p  transcript_id AT5G05570.1  protein_id AT5G05570.1p  transcript_id AT5G05570.1  
At5g05580	chr5:001664331	0.0	W/1664331-1664803,1664898-1664987,1665102-1665168,1665270-1665362,1665448-1665633,1665743-1665823,1665921-1666058,1666166-1666345	AT5G05580.1  CDS  gene_syn FAD8, FATTY ACID DESATURASE 8, MOP10.12, MOP10_12, OMEGA-3 FATTY ACID DESATURASE  gene FAD8  function Encodes a temperature sensitive plastidic fatty acid desaturase.  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast|GO:0009507|7846164|ISS  go_process fatty acid biosynthetic process|GO:0006633|7846164|IMP  go_process response to temperature stimulus|GO:0009266|7846164|IEP  go_function omega-3 fatty acid desaturase activity|GO:0042389|7846164|IMP  product FAD8 (FATTY ACID DESATURASE 8); omega-3 fatty acid desaturase  note FATTY ACID DESATURASE 8 (FAD8); FUNCTIONS IN: omega-3 fatty acid desaturase activity; INVOLVED IN: response to temperature stimulus, fatty acid biosynthetic process; LOCATED IN: chloroplast, chloroplast envelope; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: FAD7 (FATTY ACID DESATURASE 7); omega-3 fatty acid desaturase (TAIR:AT3G11170.1); Has 2057 Blast hits to 2057 proteins in 471 species: Archae - 0; Bacteria - 696; Metazoa - 17; Fungi - 178; Plants - 716; Viruses - 0; Other Eukaryotes - 450 (source: NCBI BLink).  protein_id AT5G05580.1p  transcript_id AT5G05580.1  protein_id AT5G05580.1p  transcript_id AT5G05580.1  
At5g05590	chr5:001668205	0.0	C/1668205-1668214,1667861-1667923,1667039-1667733	AT5G05590.2  CDS  gene_syn MOP10.13, MOP10_13, PAI2, PHOSPHORIBOSYLANTHRANILATE ISOMERASE, PHOSPHORIBOSYLANTHRANILATE ISOMERASE 2  gene PAI2  function Encodes phosphoribosylanthranilate isomerase which catalyzes the third step in the tryptophan biosynthetic pathway.  go_component chloroplast|GO:0009507|7773017|ISS  go_component chloroplast|GO:0009507|7890741|IDA  go_process tryptophan biosynthetic process|GO:0000162|7773017|IMP  go_process tryptophan biosynthetic process|GO:0000162|7773017|TAS  go_function phosphoribosylanthranilate isomerase activity|GO:0004640|7773017|IGI  go_function phosphoribosylanthranilate isomerase activity|GO:0004640|7773017|ISS  product PAI2 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 2); phosphoribosylanthranilate isomerase  note PHOSPHORIBOSYLANTHRANILATE ISOMERASE 2 (PAI2); FUNCTIONS IN: phosphoribosylanthranilate isomerase activity; INVOLVED IN: tryptophan biosynthetic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: N-(5&apos;phosphoribosyl)anthranilate isomerase (PRAI) (InterPro:IPR001240), Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: PAI1 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1); phosphoribosylanthranilate isomerase (TAIR:AT1G07780.4); Has 1547 Blast hits to 1547 proteins in 639 species: Archae - 11; Bacteria - 985; Metazoa - 2; Fungi - 164; Plants - 51; Viruses - 0; Other Eukaryotes - 334 (source: NCBI BLink).  protein_id AT5G05590.2p  transcript_id AT5G05590.2  protein_id AT5G05590.2p  transcript_id AT5G05590.2  
At5g05590	chr5:001668205	0.0	C/1668205-1668214,1667861-1667923,1667369-1667733,1667115-1667278,1666734-1666959	AT5G05590.1  CDS  gene_syn MOP10.13, MOP10_13, PAI2, PHOSPHORIBOSYLANTHRANILATE ISOMERASE, PHOSPHORIBOSYLANTHRANILATE ISOMERASE 2  gene PAI2  function Encodes phosphoribosylanthranilate isomerase which catalyzes the third step in the tryptophan biosynthetic pathway.  go_component chloroplast|GO:0009507|7773017|ISS  go_component chloroplast|GO:0009507|7890741|IDA  go_process tryptophan biosynthetic process|GO:0000162|7773017|IMP  go_process tryptophan biosynthetic process|GO:0000162|7773017|TAS  go_function phosphoribosylanthranilate isomerase activity|GO:0004640|7773017|IGI  go_function phosphoribosylanthranilate isomerase activity|GO:0004640|7773017|ISS  product PAI2 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 2); phosphoribosylanthranilate isomerase  note PHOSPHORIBOSYLANTHRANILATE ISOMERASE 2 (PAI2); FUNCTIONS IN: phosphoribosylanthranilate isomerase activity; INVOLVED IN: tryptophan biosynthetic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: N-(5&apos;phosphoribosyl)anthranilate isomerase (PRAI) (InterPro:IPR001240), Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: PAI1 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1); phosphoribosylanthranilate isomerase (TAIR:AT1G07780.3); Has 3624 Blast hits to 3623 proteins in 1217 species: Archae - 121; Bacteria - 2128; Metazoa - 4; Fungi - 188; Plants - 51; Viruses - 0; Other Eukaryotes - 1132 (source: NCBI BLink).  protein_id AT5G05590.1p  transcript_id AT5G05590.1  protein_id AT5G05590.1p  transcript_id AT5G05590.1  
At5g05598	chr5:001671812	0.0	W/1671812-1671875,1671944-1672062	AT5G05598.1  CDS  function Encodes a Defensin-like (DEFL) family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G05598.1p  transcript_id AT5G05598.1  protein_id AT5G05598.1p  transcript_id AT5G05598.1  
At5g05600	chr5:001672266	0.0	W/1672266-1672801,1673108-1673438,1674354-1674602	AT5G05600.1  CDS  gene_syn MOP10.14, MOP10_14  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process response to salt stress|GO:0009651|11351099|IEP  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, iron ion binding; INVOLVED IN: response to salt stress; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT3G11180.1); Has 6078 Blast hits to 6039 proteins in 692 species: Archae - 0; Bacteria - 730; Metazoa - 123; Fungi - 674; Plants - 3117; Viruses - 0; Other Eukaryotes - 1434 (source: NCBI BLink).  protein_id AT5G05600.1p  transcript_id AT5G05600.1  protein_id AT5G05600.1p  transcript_id AT5G05600.1  
At5g05610	chr5:001678849	0.0	C/1678849-1678942,1678720-1678752,1678373-1678595,1677704-1677827,1677331-1677582	AT5G05610.1  CDS  gene_syn AL1, ALFIN-LIKE 1, MOP10.15, MOP10_15  gene AL1  function AL1 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.  go_component nucleus|GO:0005634|19154204|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function methylated histone residue binding|GO:0035064|19154204|IDA  product AL1 (ALFIN-LIKE 1); DNA binding / methylated histone residue binding  note ALFIN-LIKE 1 (AL1); FUNCTIONS IN: methylated histone residue binding, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: AL2 (ALFIN-LIKE 2); DNA binding / methylated histone residue binding (TAIR:AT3G11200.1); Has 1086 Blast hits to 1052 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 585; Fungi - 155; Plants - 296; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT5G05610.1p  transcript_id AT5G05610.1  protein_id AT5G05610.1p  transcript_id AT5G05610.1  
At5g05610	chr5:001678849	0.0	C/1678849-1678942,1678720-1678752,1678373-1678595,1677704-1677827,1677331-1677582	AT5G05610.2  CDS  gene_syn AL1, ALFIN-LIKE 1, MOP10.15, MOP10_15  gene AL1  function AL1 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.  go_component nucleus|GO:0005634|19154204|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function methylated histone residue binding|GO:0035064|19154204|IDA  product AL1 (ALFIN-LIKE 1); DNA binding / methylated histone residue binding  note ALFIN-LIKE 1 (AL1); FUNCTIONS IN: methylated histone residue binding, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: AL2 (ALFIN-LIKE 2); DNA binding / methylated histone residue binding (TAIR:AT3G11200.1); Has 1086 Blast hits to 1052 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 585; Fungi - 155; Plants - 296; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT5G05610.2p  transcript_id AT5G05610.2  protein_id AT5G05610.2p  transcript_id AT5G05610.2  
At5g05620	chr5:001679340	0.0	W/1679340-1679468,1679587-1679899,1679988-1680388,1680532-1680585,1680660-1680764,1680867-1680941,1681034-1681078,1681223-1681351,1681461-1681565,1681651-1681719	AT5G05620.1  CDS  gene_syn ARABIDOPSIS THALIANA GAMMA-TUBULIN COMPLEX PROTEIN 2, ATGCP2, GAMMA-TUBULIN COMPLEX PROTEIN 2, GAMMA-TUBULIN 2, GCP2, MJJ3.10, MJJ3_10, TUBG2  gene GCP2  function Paralog of TUBG1, required for centrosomal and noncentrosomal microtubule nucleation. Involved in specification of cell identity, such as stomatal patterning. Constitutively expressed throughout plant.  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_component cell wall|GO:0005618|15469496|IDA  go_component nuclear envelope|GO:0005635|17714428|IDA  go_component cytoplasm|GO:0005737|15469496|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component microtubule|GO:0005874|16603653|IDA  go_component plasma membrane|GO:0005886|17714428|IDA  go_process cytokinesis|GO:0000910|16603653|IMP  go_process phragmoplast formation|GO:0000914|16698945|IGI  go_process microtubule nucleation|GO:0007020|16603653|IMP  go_process embryo sac development|GO:0009553|16698945|IGI  go_process stomatal complex morphogenesis|GO:0010103|16603653|IMP  go_process microtubule polymerization|GO:0046785|16603653|IMP  go_process leaf development|GO:0048366|16603653|IMP  go_process root hair cell tip growth|GO:0048768|16603653|IMP  go_process cellular localization|GO:0051641|16603653|IMP  go_function structural molecule activity|GO:0005198||ISS  product GCP2 (GAMMA-TUBULIN COMPLEX PROTEIN 2); GTP binding / GTPase/ structural molecule  note GAMMA-TUBULIN COMPLEX PROTEIN 2 (GCP2); FUNCTIONS IN: structural molecule activity, GTP binding, GTPase activity; INVOLVED IN: in 9 processes; LOCATED IN: in 6 components; CONTAINS InterPro DOMAIN/s: Gamma tubulin (InterPro:IPR002454), Tubulin, conserved site (InterPro:IPR017975), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase (InterPro:IPR003008), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: TUBG1 (GAMMA-TUBULIN); GTP binding / GTPase/ structural molecule (TAIR:AT3G61650.1); Has 16356 Blast hits to 16331 proteins in 3549 species: Archae - 15; Bacteria - 34; Metazoa - 3346; Fungi - 9287; Plants - 943; Viruses - 0; Other Eukaryotes - 2731 (source: NCBI BLink).  protein_id AT5G05620.1p  transcript_id AT5G05620.1  protein_id AT5G05620.1p  transcript_id AT5G05620.1  
At5g05630	chr5:001682541	0.0	W/1682541-1684013	AT5G05630.1  CDS  gene_syn MJJ3.2, MJJ3_2  go_component chloroplast|GO:0009507||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_process amino acid transport|GO:0006865||IEA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_function cationic amino acid transmembrane transporter activity|GO:0015326||ISS  product amino acid permease family protein  note amino acid permease family protein; FUNCTIONS IN: cationic amino acid transmembrane transporter activity; INVOLVED IN: transport, amino acid transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: shoot apex, leaf whorl, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease-associated region (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: amino acid permease family protein (TAIR:AT1G31830.2); Has 13702 Blast hits to 13690 proteins in 1170 species: Archae - 235; Bacteria - 10920; Metazoa - 982; Fungi - 644; Plants - 216; Viruses - 0; Other Eukaryotes - 705 (source: NCBI BLink).  protein_id AT5G05630.1p  transcript_id AT5G05630.1  protein_id AT5G05630.1p  transcript_id AT5G05630.1  
At5g05640	chr5:001684606	0.0	W/1684606-1685577	AT5G05640.1  CDS  gene_syn MJJ3.3, MJJ3_3  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product nucleoprotein-related  note nucleoprotein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; Has 127 Blast hits to 127 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 124; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G05640.1p  transcript_id AT5G05640.1  protein_id AT5G05640.1p  transcript_id AT5G05640.1  
At5g05650	chr5:001686532	0.0	C/1686532-1686909	AT5G05650.1  CDS  gene_syn MJJ3.4, MJJ3_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: FLA17 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17 PRECURSOR) (TAIR:AT5G06390.1); Has 71 Blast hits to 71 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G05650.1p  transcript_id AT5G05650.1  protein_id AT5G05650.1p  transcript_id AT5G05650.1  
At5g05657	chr5:001689013	0.0	W/1689013-1689426	AT5G05657.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: hairpin-responsive protein, putative (HIN1) (TAIR:AT5G06330.1); Has 358 Blast hits to 358 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 358; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G05657.1p  transcript_id AT5G05657.1  protein_id AT5G05657.1p  transcript_id AT5G05657.1  
At5g05660	chr5:001694301	0.0	C/1694301-1695464,1694095-1694208,1693963-1694018,1693755-1693821,1693252-1693344,1693071-1693156,1692811-1692973,1692513-1692680,1692096-1692286,1691849-1691930,1691555-1691761,1691379-1691468,1691113-1691274	AT5G05660.1  CDS  gene_syn ATNFXL2, MJJ3.6, MJJ3_6  gene ATNFXL2  function Encodes a homolog of the mammalian zinc finger transcription factor NF-X1.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700||ISS  product ATNFXL2; protein binding / transcription factor/ zinc ion binding  note ATNFXL2; FUNCTIONS IN: protein binding, transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NF-X1-type (InterPro:IPR000967), Zinc finger, PHD-type (InterPro:IPR001965); BEST Arabidopsis thaliana protein match is: ATNFXL1 (ARABIDOPSIS THALIANA NF-X-LIKE 1); protein binding / transcription factor/ zinc ion binding (TAIR:AT1G10170.1); Has 9193 Blast hits to 4668 proteins in 204 species: Archae - 4; Bacteria - 73; Metazoa - 7657; Fungi - 289; Plants - 92; Viruses - 2; Other Eukaryotes - 1076 (source: NCBI BLink).  protein_id AT5G05660.1p  transcript_id AT5G05660.1  protein_id AT5G05660.1p  transcript_id AT5G05660.1  
At5g05670	chr5:001697393	0.0	C/1697393-1697534,1696957-1697039,1696712-1696798,1696458-1696606,1696201-1696332,1695916-1696105	AT5G05670.1  CDS  gene_syn MJJ3.7, MJJ3_7  go_component plasma membrane|GO:0005886|17317660|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_function signal recognition particle binding|GO:0005047||ISS  product signal recognition particle binding  note signal recognition particle binding; FUNCTIONS IN: signal recognition particle binding; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: signal recognition particle binding (TAIR:AT2G18770.1); Has 911 Blast hits to 911 proteins in 185 species: Archae - 2; Bacteria - 40; Metazoa - 443; Fungi - 156; Plants - 102; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).  protein_id AT5G05670.1p  transcript_id AT5G05670.1  protein_id AT5G05670.1p  transcript_id AT5G05670.1  
At5g05670	chr5:001697393	0.0	C/1697393-1697534,1696957-1697039,1696712-1696798,1696458-1696606,1696201-1696332,1695916-1696105	AT5G05670.2  CDS  gene_syn MJJ3.7, MJJ3_7  go_component plasma membrane|GO:0005886|17317660|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_function signal recognition particle binding|GO:0005047||ISS  product signal recognition particle binding  note signal recognition particle binding; FUNCTIONS IN: signal recognition particle binding; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: signal recognition particle binding (TAIR:AT2G18770.1); Has 911 Blast hits to 911 proteins in 185 species: Archae - 2; Bacteria - 40; Metazoa - 443; Fungi - 156; Plants - 102; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).  protein_id AT5G05670.2p  transcript_id AT5G05670.2  protein_id AT5G05670.2p  transcript_id AT5G05670.2  
At5g05680	chr5:001698365	0.0	W/1698365-1698652,1698979-1699130,1699256-1699378,1699627-1699771,1699899-1699960,1700392-1700608,1700844-1701767,1701858-1702107,1702204-1702475	AT5G05680.1  CDS  gene_syn MJJ3.8, MJJ3_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product nuclear pore complex protein-related  note nuclear pore complex protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; Has 361 Blast hits to 348 proteins in 84 species: Archae - 2; Bacteria - 20; Metazoa - 218; Fungi - 31; Plants - 27; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT5G05680.1p  transcript_id AT5G05680.1  protein_id AT5G05680.1p  transcript_id AT5G05680.1  
At5g05690	chr5:001706190	0.0	C/1706190-1706348,1705849-1705998,1705513-1705761,1703690-1703776,1703518-1703596,1703326-1703432,1703104-1703234,1702907-1703006	AT5G05690.3  CDS  gene_syn CABBAGE 3, CBB3, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CPD, CYP90, CYP90A, CYP90A1, CYTOCHROME P450, CYTOCHROME P450 90A1, CYTOCHROME P450 MONOOXYGENASE, DWARF 3, DWF3, MJJ3.9, MJJ3_9  gene CPD  function Encodes a member of the CP90A family, a cytochrome P450 monooxygenase which converts 6-deoxocathasterone to 6-deoxoteasterone in the late C6 oxidation pathway and cathasterone to teasterone in the early C6 oxidation pathway of brassinolide biosynthesis. Expressed in cotyledons and leaves. Mutants display de-etiolation and derepression of light-induced genes in the dark, dwarfism, male sterility and activation of stress-regulated genes in the light. The expression of the gene using a CPD promoter:LUC fusion construct was shown to be under circadian and light control. Additionally, the circadian regulation was shown to be independent of BR levels as it remains unchanged in <i>bri1</i> mutant lines. CPD appears to be involved in the autonomous pathway that regulates the transition to flowering, primarily through a BRI1-mediated signaling pathway that affects FLC expression levels, as uncovered by double mutant analyses.  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process circadian rhythm|GO:0007623|16531479|IEP  go_process response to light stimulus|GO:0009416|16531479|IEP  go_process unidimensional cell growth|GO:0009826||IMP  go_process positive regulation of flower development|GO:0009911|17611230|IGI  go_process response to UV-B|GO:0010224|15474373|IGI  go_process brassinosteroid homeostasis|GO:0010268|15908602|IEP  go_process brassinosteroid biosynthetic process|GO:0016132|8612270|IMP  go_function oxygen binding|GO:0019825||ISS  product CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CONSTITUTIVE PHOTOMORPHOGENIC DWARF (CPD); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: in 7 processes; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: ROT3 (ROTUNDIFOLIA 3); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen / oxygen binding / steroid hydroxylase (TAIR:AT4G36380.1); Has 23379 Blast hits to 23349 proteins in 1260 species: Archae - 23; Bacteria - 3869; Metazoa - 9560; Fungi - 3873; Plants - 4761; Viruses - 3; Other Eukaryotes - 1290 (source: NCBI BLink).  protein_id AT5G05690.3p  transcript_id AT5G05690.3  protein_id AT5G05690.3p  transcript_id AT5G05690.3  
At5g05690	chr5:001706190	0.0	C/1706190-1706705,1705849-1705998,1705513-1705761,1703690-1703776,1703518-1703596,1703326-1703432,1703104-1703234,1702907-1703006	AT5G05690.1  CDS  gene_syn CABBAGE 3, CBB3, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CPD, CYP90, CYP90A, CYP90A1, CYTOCHROME P450, CYTOCHROME P450 90A1, CYTOCHROME P450 MONOOXYGENASE, DWARF 3, DWF3, MJJ3.9, MJJ3_9  gene CPD  function Encodes a member of the CP90A family, a cytochrome P450 monooxygenase which converts 6-deoxocathasterone to 6-deoxoteasterone in the late C6 oxidation pathway and cathasterone to teasterone in the early C6 oxidation pathway of brassinolide biosynthesis. Expressed in cotyledons and leaves. Mutants display de-etiolation and derepression of light-induced genes in the dark, dwarfism, male sterility and activation of stress-regulated genes in the light. The expression of the gene using a CPD promoter:LUC fusion construct was shown to be under circadian and light control. Additionally, the circadian regulation was shown to be independent of BR levels as it remains unchanged in <i>bri1</i> mutant lines. CPD appears to be involved in the autonomous pathway that regulates the transition to flowering, primarily through a BRI1-mediated signaling pathway that affects FLC expression levels, as uncovered by double mutant analyses.  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process circadian rhythm|GO:0007623|16531479|IEP  go_process response to light stimulus|GO:0009416|16531479|IEP  go_process unidimensional cell growth|GO:0009826||IMP  go_process positive regulation of flower development|GO:0009911|17611230|IGI  go_process response to UV-B|GO:0010224|15474373|IGI  go_process brassinosteroid homeostasis|GO:0010268|15908602|IEP  go_process brassinosteroid biosynthetic process|GO:0016132|8612270|IMP  go_function oxygen binding|GO:0019825||ISS  product CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CONSTITUTIVE PHOTOMORPHOGENIC DWARF (CPD); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: in 7 processes; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973); BEST Arabidopsis thaliana protein match is: DWF4 (DWARF 4); steroid 22-alpha hydroxylase (TAIR:AT3G50660.1); Has 23600 Blast hits to 23553 proteins in 1262 species: Archae - 23; Bacteria - 3880; Metazoa - 9685; Fungi - 3889; Plants - 4798; Viruses - 3; Other Eukaryotes - 1322 (source: NCBI BLink).  protein_id AT5G05690.1p  transcript_id AT5G05690.1  protein_id AT5G05690.1p  transcript_id AT5G05690.1  
At5g05690	chr5:001706190	0.0	C/1706190-1706705,1705849-1705998,1705513-1705761,1703690-1703776,1703518-1703596,1703326-1703432,1703206-1703232	AT5G05690.2  CDS  gene_syn CABBAGE 3, CBB3, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CPD, CYP90, CYP90A, CYP90A1, CYTOCHROME P450, CYTOCHROME P450 90A1, CYTOCHROME P450 MONOOXYGENASE, DWARF 3, DWF3, MJJ3.9, MJJ3_9  gene CPD  function Encodes a member of the CP90A family, a cytochrome P450 monooxygenase which converts 6-deoxocathasterone to 6-deoxoteasterone in the late C6 oxidation pathway and cathasterone to teasterone in the early C6 oxidation pathway of brassinolide biosynthesis. Expressed in cotyledons and leaves. Mutants display de-etiolation and derepression of light-induced genes in the dark, dwarfism, male sterility and activation of stress-regulated genes in the light. The expression of the gene using a CPD promoter:LUC fusion construct was shown to be under circadian and light control. Additionally, the circadian regulation was shown to be independent of BR levels as it remains unchanged in <i>bri1</i> mutant lines. CPD appears to be involved in the autonomous pathway that regulates the transition to flowering, primarily through a BRI1-mediated signaling pathway that affects FLC expression levels, as uncovered by double mutant analyses.  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process circadian rhythm|GO:0007623|16531479|IEP  go_process response to light stimulus|GO:0009416|16531479|IEP  go_process unidimensional cell growth|GO:0009826||IMP  go_process positive regulation of flower development|GO:0009911|17611230|IGI  go_process response to UV-B|GO:0010224|15474373|IGI  go_process brassinosteroid homeostasis|GO:0010268|15908602|IEP  go_process brassinosteroid biosynthetic process|GO:0016132|8612270|IMP  go_function oxygen binding|GO:0019825||ISS  product CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CONSTITUTIVE PHOTOMORPHOGENIC DWARF (CPD); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: in 7 processes; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: DWF4 (DWARF 4); steroid 22-alpha hydroxylase (TAIR:AT3G50660.1); Has 17419 Blast hits to 17388 proteins in 1107 species: Archae - 23; Bacteria - 2451; Metazoa - 7732; Fungi - 2588; Plants - 3827; Viruses - 3; Other Eukaryotes - 795 (source: NCBI BLink).  protein_id AT5G05690.2p  transcript_id AT5G05690.2  protein_id AT5G05690.2p  transcript_id AT5G05690.2  
At5g05700	chr5:001715507	0.0	C/1715507-1715639,1715307-1715345,1715064-1715214,1713733-1714833,1713194-1713551,1712950-1713066	AT5G05700.1  CDS  gene_syn ARGININE-TRNA PROTEIN TRANSFERASE 1, ATATE1, ATE1, DELAYED LEAF SENESCENCE 1, DLS1, MJJ3.1, MJJ3_1  gene ATE1  function Encodes an arginyl-tRNA:protein transferase (ATE1), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6). PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. Mutants of ATE1 also display delayed leaf senescence.  go_component cellular_component|GO:0005575||ND  go_process response to abscisic acid stimulus|GO:0009737|19255443|IGI  go_process regulation of seed germination|GO:0010029|19255443|IGI  go_process leaf senescence|GO:0010150|12366806|IMP  go_process protein arginylation|GO:0016598||ISS  go_process regulation of lipid catabolic process|GO:0050994|19255443|IGI  go_function arginyltransferase activity|GO:0004057|12366806|IMP  go_function arginyltransferase activity|GO:0004057||ISS  product ATE1 (ARGININE-TRNA PROTEIN TRANSFERASE 1); arginyltransferase  note ARGININE-TRNA PROTEIN TRANSFERASE 1 (ATE1); FUNCTIONS IN: arginyltransferase activity; INVOLVED IN: regulation of lipid catabolic process, regulation of seed germination, leaf senescence, protein arginylation, response to abscisic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arginine-tRNA-protein transferase, N-terminal (InterPro:IPR007471), Arginine-tRNA-protein transferase 1, eukaryotic (InterPro:IPR017137), Arginine-tRNA-protein transferase, C-terminal (InterPro:IPR007472); BEST Arabidopsis thaliana protein match is: ATE2 (ARGININE-TRNA PROTEIN TRANSFERASE 2); arginyltransferase (TAIR:AT3G11240.1); Has 8272 Blast hits to 4411 proteins in 661 species: Archae - 0; Bacteria - 1509; Metazoa - 2374; Fungi - 1033; Plants - 352; Viruses - 190; Other Eukaryotes - 2814 (source: NCBI BLink).  protein_id AT5G05700.1p  transcript_id AT5G05700.1  protein_id AT5G05700.1p  transcript_id AT5G05700.1  
At5g05710	chr5:001715943	0.0	W/1715943-1716377	AT5G05710.1  CDS  gene_syn MJJ3.11, MJJ3_11  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product pleckstrin homology (PH) domain-containing protein  note pleckstrin homology (PH) domain-containing protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: ATPH1 (ARABIDOPSIS THALIANA PLECKSTRIN HOMOLOGUE 1); phosphoinositide binding (TAIR:AT2G29700.1); Has 2462 Blast hits to 2395 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 2053; Fungi - 42; Plants - 46; Viruses - 3; Other Eukaryotes - 318 (source: NCBI BLink).  protein_id AT5G05710.1p  transcript_id AT5G05710.1  protein_id AT5G05710.1p  transcript_id AT5G05710.1  
At5g05720	chr5:001716871	0.0	W/1716871-1716872,1716988-1717098,1717166-1717280,1717363-1717395,1717561-1717626,1717719-1718000,1718173-1718238,1718367-1718562,1718747-1718829,1719034-1719253,1719360-1719541	AT5G05720.1  CDS  gene_syn MJJ3.13, MJJ3_13  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT4G19610.1); Has 1775 Blast hits to 1417 proteins in 229 species: Archae - 0; Bacteria - 42; Metazoa - 880; Fungi - 402; Plants - 209; Viruses - 0; Other Eukaryotes - 242 (source: NCBI BLink).  protein_id AT5G05720.1p  transcript_id AT5G05720.1  protein_id AT5G05720.1p  transcript_id AT5G05720.1  
At5g05730	chr5:001722622	0.0	C/1722622-1722811,1722228-1722412,1721940-1722135,1721276-1721427,1721041-1721156,1720700-1720946,1720556-1720612,1720244-1720477,1719740-1720150	AT5G05730.1  CDS  gene_syn A-METHYL TRYPTOPHAN RESISTANT 1, AMT1, ANTHRANILATE SYNTHASE ALPHA SUBUNIT, ANTHRANILATE SYNTHASE ALPHA SUBUNIT 1, ASA1, MJJ3.14, MJJ3_14, TRP5, TRYPTOPHAN BIOSYNTHESIS 5, WEAK ETHYLENE INSENSITIVE 2, WEI2  gene ASA1  function ASA1 encodes the alpha subunit of anthranilate synthase, which catalyzes the rate-limiting step of tryptophan synthesis. ASA1 is induced by ethylene, and forms a link between ethylene signalling and auxin synthesis in roots.  go_component chloroplast|GO:0009507|18431481|IDA  go_component anthranilate synthase complex|GO:0005950|1392592|NAS  go_component chloroplast|GO:0009507|1392592|TAS  go_process tryptophan biosynthetic process|GO:0000162|1392592|TAS  go_process response to wounding|GO:0009611|1392592|IEP  go_process response to bacterium|GO:0009617|1392592|IEP  go_process response to bacterium|GO:0009617||IEP  go_process response to ethylene stimulus|GO:0009723|15980261|IGI  go_process auxin biosynthetic process|GO:0009851|15980261|IGI  go_process lateral root primordium development|GO:0010386|18435826|IMP  go_function anthranilate synthase activity|GO:0004049|1392592|IGI  go_function anthranilate synthase activity|GO:0004049|1392592|IMP  product ASA1 (ANTHRANILATE SYNTHASE ALPHA SUBUNIT 1); anthranilate synthase  note ANTHRANILATE SYNTHASE ALPHA SUBUNIT 1 (ASA1); FUNCTIONS IN: anthranilate synthase activity; INVOLVED IN: in 6 processes; LOCATED IN: chloroplast, anthranilate synthase complex; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Anthranilate synthase component I, N-terminal (InterPro:IPR006805), Chorismate binding, C-terminal (InterPro:IPR015890), Anthranilate synthase component I and chorismate binding protein (InterPro:IPR005801), Anthranilate synthase component I (InterPro:IPR005256); BEST Arabidopsis thaliana protein match is: ASA2 (ANTHRANILATE SYNTHASE 2); anthranilate synthase (TAIR:AT2G29690.1); Has 10899 Blast hits to 10896 proteins in 1355 species: Archae - 159; Bacteria - 5790; Metazoa - 4; Fungi - 208; Plants - 113; Viruses - 0; Other Eukaryotes - 4625 (source: NCBI BLink).  protein_id AT5G05730.1p  transcript_id AT5G05730.1  protein_id AT5G05730.1p  transcript_id AT5G05730.1  
At5g05740	chr5:001726699	0.0	C/1726699-1726859,1726532-1726604,1726255-1726389,1725810-1726058,1725602-1725676,1725398-1725503,1725220-1725313,1724967-1725120,1724665-1724872,1724409-1724569,1724023-1724277	AT5G05740.1  CDS  gene_syn ATEGY2, EGY2, MJJ3.15, MJJ3_15  gene EGY2  function S2P-like putative metalloprotease, also contain transmembrane helices near their C-termini and many of them, five of seven, contain a conserved zinc-binding motif HEXXH. Homolog of EGY1. Each of the EGY1 and EGY-like proteins share two additional highly conserved motifs, the previously reported NPDG motif (aa 442 454 in EGY1, Rudner et al., 1999) and a newly defined GNLR motif (aa 171 179 in EGY1). The GNLR motif is a novel signature motif unique to EGY1 and EGY-like proteins as well as other EGY1 orthologs found in cyanobacteria.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process proteolysis|GO:0006508||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_process proteolysis|GO:0006508||ISS  go_function metalloendopeptidase activity|GO:0004222||ISS  product EGY2; metalloendopeptidase  note EGY2; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M50 (InterPro:IPR008915); BEST Arabidopsis thaliana protein match is: EGY1 (ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1); metalloendopeptidase (TAIR:AT5G35220.1); Has 526 Blast hits to 526 proteins in 162 species: Archae - 83; Bacteria - 309; Metazoa - 0; Fungi - 1; Plants - 58; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT5G05740.1p  transcript_id AT5G05740.1  protein_id AT5G05740.1p  transcript_id AT5G05740.1  
At5g05740	chr5:001726699	0.0	C/1726699-1726859,1726532-1726604,1726255-1726389,1726008-1726058,1725810-1725920,1725602-1725676,1725398-1725503,1725220-1725313,1724967-1725120,1724665-1724872,1724409-1724569,1724023-1724277	AT5G05740.2  CDS  gene_syn ATEGY2, EGY2, MJJ3.15, MJJ3_15  gene EGY2  function S2P-like putative metalloprotease, also contain transmembrane helices near their C-termini and many of them, five of seven, contain a conserved zinc-binding motif HEXXH. Homolog of EGY1. Each of the EGY1 and EGY-like proteins share two additional highly conserved motifs, the previously reported NPDG motif (aa 442 454 in EGY1, Rudner et al., 1999) and a newly defined GNLR motif (aa 171 179 in EGY1). The GNLR motif is a novel signature motif unique to EGY1 and EGY-like proteins as well as other EGY1 orthologs found in cyanobacteria.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process proteolysis|GO:0006508||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_process proteolysis|GO:0006508||ISS  go_function metalloendopeptidase activity|GO:0004222||ISS  product EGY2; metalloendopeptidase  note EGY2; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M50 (InterPro:IPR008915); BEST Arabidopsis thaliana protein match is: EGY1 (ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1); metalloendopeptidase (TAIR:AT5G35220.1); Has 525 Blast hits to 525 proteins in 161 species: Archae - 83; Bacteria - 309; Metazoa - 0; Fungi - 1; Plants - 58; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT5G05740.2p  transcript_id AT5G05740.2  protein_id AT5G05740.2p  transcript_id AT5G05740.2  
At5g05750	chr5:001727595	0.0	W/1727595-1728479	AT5G05750.1  CDS  gene_syn MJJ3.16, MJJ3_16  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Tetratricopeptide region (InterPro:IPR013026), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT3G57340.2); Has 16636 Blast hits to 16631 proteins in 1960 species: Archae - 118; Bacteria - 5128; Metazoa - 3676; Fungi - 1518; Plants - 1246; Viruses - 21; Other Eukaryotes - 4929 (source: NCBI BLink).  protein_id AT5G05750.1p  transcript_id AT5G05750.1  protein_id AT5G05750.1p  transcript_id AT5G05750.1  
At5g05760	chr5:001730693	0.0	C/1730693-1730903,1730034-1730284,1729790-1729935,1729667-1729711,1729356-1729553,1729111-1729270	AT5G05760.1  CDS  gene_syn ATSED5, ATSYP31, MJJ3.17, MJJ3_17, SED5, SYNTAXIN OF PLANTS 31, SYP31, T-SNARE SED 5  gene SYP31  function A SNARE protein (ortholog of syntaxin 5), a membrane fusion machine component involved in cytokinesis  go_component microsome|GO:0005792|12427991|IDA  go_component cell plate|GO:0009504|12427991|IDA  go_process intracellular protein transport|GO:0006886|11115874|TAS  go_process membrane fusion|GO:0006944|11115874|TAS  go_function SNAP receptor activity|GO:0005484|11115874|TAS  product SYP31 (SYNTAXIN OF PLANTS 31); SNAP receptor  note SYNTAXIN OF PLANTS 31 (SYP31); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion, intracellular protein transport; LOCATED IN: microsome, cell plate; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: SYP32 (SYNTAXIN OF PLANTS 32); SNAP receptor (TAIR:AT3G24350.1); Has 486 Blast hits to 485 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 168; Fungi - 145; Plants - 84; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT5G05760.1p  transcript_id AT5G05760.1  protein_id AT5G05760.1p  transcript_id AT5G05760.1  
At5g05770	chr5:001734487	0.0	W/1734487-1734855	AT5G05770.1  CDS  gene_syn MJJ3.18, MJJ3_18, WOX7, WUSCHEL-RELATED HOMEOBOX 7  gene WOX7  function Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product WOX7 (WUSCHEL-RELATED HOMEOBOX 7); DNA binding / transcription factor  note WUSCHEL-RELATED HOMEOBOX 7 (WOX7); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WOX5 (WUSCHEL RELATED HOMEOBOX 5); transcription factor (TAIR:AT3G11260.1); Has 304 Blast hits to 304 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 304; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G05770.1p  transcript_id AT5G05770.1  protein_id AT5G05770.1p  transcript_id AT5G05770.1  
At5g05780	chr5:001735862	0.0	W/1735862-1736048,1736447-1736539,1736623-1736704,1736889-1736985,1737079-1737154,1737286-1737344,1737513-1737635,1737800-1737857,1737944-1738029,1738111-1738176	AT5G05780.1  CDS  gene_syn AE3, ASYMMETRIC LEAVES ENHANCER 3, ATHMOV34, MJJ3.19, MJJ3_19, PUTATIVE 26S PROTEASOME SUBUNIT ATHMOV34, RP NON-ATPASE SUBUNIT 8A, RPN8A  gene RPN8A  function Encodes a putative 26S proteasome subunit RPN8a. The function of RPN8a and other 26S subunits may be required for specifying leaf adaxial identity.  go_component proteasome regulatory particle, lid subcomplex|GO:0008541||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_process leaf morphogenesis|GO:0009965|17028202|IMP  go_function molecular_function|GO:0003674||ND  product RPN8A (RP NON-ATPASE SUBUNIT 8A)  note RP NON-ATPASE SUBUNIT 8A (RPN8A); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: leaf morphogenesis, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, lid subcomplex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: MEE34 (maternal effect embryo arrest 34) (TAIR:AT3G11270.1); Has 933 Blast hits to 929 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 441; Fungi - 191; Plants - 158; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).  protein_id AT5G05780.1p  transcript_id AT5G05780.1  protein_id AT5G05780.1p  transcript_id AT5G05780.1  
At5g05790	chr5:001741256	0.0	C/1741256-1741671,1740724-1741141	AT5G05790.1  CDS  gene_syn MJJ3.20, MJJ3_20  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT3G11280.2); Has 976 Blast hits to 974 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 0; Plants - 805; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT5G05790.1p  transcript_id AT5G05790.1  protein_id AT5G05790.1p  transcript_id AT5G05790.1  
At5g05795	chr5:001742692	0.0	W/1742692-1742764	AT5G05795.1  tRNA  gene_syn 67591.TRNA-ARG-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: CCT)  transcript_id AT5G05795.1  
At5g05800	chr5:001744446	0.0	C/1744446-1744751,1743877-1744365,1743234-1743788	AT5G05800.1  CDS  gene_syn MJJ3.22, MJJ3_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 434 Blast hits to 262 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 26; Plants - 408; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G05800.1p  transcript_id AT5G05800.1  protein_id AT5G05800.1p  transcript_id AT5G05800.1  
At5g05800	chr5:001744446	0.0	C/1744446-1744751,1743877-1744365,1743234-1743788	AT5G05800.2  CDS  gene_syn MJJ3.22, MJJ3_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 434 Blast hits to 262 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 26; Plants - 408; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G05800.2p  transcript_id AT5G05800.2  protein_id AT5G05800.2p  transcript_id AT5G05800.2  
At5g05810	chr5:001746938	0.0	W/1746938-1747999	AT5G05810.1  CDS  gene_syn ATL43, MJJ3.23, MJJ3_23  gene ATL43  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product ATL43; protein binding / zinc ion binding  note ATL43; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G20030.1); Has 5930 Blast hits to 5913 proteins in 223 species: Archae - 0; Bacteria - 2; Metazoa - 1997; Fungi - 421; Plants - 2595; Viruses - 60; Other Eukaryotes - 855 (source: NCBI BLink).  protein_id AT5G05810.1p  transcript_id AT5G05810.1  protein_id AT5G05810.1p  transcript_id AT5G05810.1  
At5g05820	chr5:001753411	0.0	C/1753411-1753857,1752895-1752998,1752558-1752786,1752106-1752255	AT5G05820.1  CDS  gene_syn MJJ3.24, MJJ3_24  go_function organic anion transmembrane transporter activity|GO:0008514||ISS  product phosphate translocator-related  note phosphate translocator-related; FUNCTIONS IN: organic anion transmembrane transporter activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: organic anion transmembrane transporter (TAIR:AT3G11320.1); Has 2065 Blast hits to 2060 proteins in 219 species: Archae - 12; Bacteria - 61; Metazoa - 649; Fungi - 309; Plants - 765; Viruses - 0; Other Eukaryotes - 269 (source: NCBI BLink).  protein_id AT5G05820.1p  transcript_id AT5G05820.1  protein_id AT5G05820.1p  transcript_id AT5G05820.1  
At5g05830	chr5:001755910	0.0	W/1755910-1756283,1756585-1756825	AT5G05830.1  CDS  gene_syn MJJ3.25, MJJ3_25  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G01070.2); Has 323 Blast hits to 323 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 48; Fungi - 0; Plants - 271; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G05830.1p  transcript_id AT5G05830.1  protein_id AT5G05830.1p  transcript_id AT5G05830.1  
At5g05840	chr5:001760138	0.0	C/1760138-1760458,1759396-1759761,1757268-1757900	AT5G05840.1  CDS  gene_syn MJJ3.26, MJJ3_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, sepal, flower, seed, stamen; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF620 (InterPro:IPR006873); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55720.1); Has 109 Blast hits to 107 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G05840.1p  transcript_id AT5G05840.1  protein_id AT5G05840.1p  transcript_id AT5G05840.1  
At5g05850	chr5:001763890	0.0	C/1763890-1764609,1763403-1763569,1762691-1763324	AT5G05850.1  CDS  gene_syn MJJ3.27, MJJ3_27  go_function protein binding|GO:0005515||IEA  go_process biological_process|GO:0008150||ND  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT3G11330.1); Has 56256 Blast hits to 22730 proteins in 871 species: Archae - 26; Bacteria - 4555; Metazoa - 26152; Fungi - 1756; Plants - 20280; Viruses - 6; Other Eukaryotes - 3481 (source: NCBI BLink).  protein_id AT5G05850.1p  transcript_id AT5G05850.1  protein_id AT5G05850.1p  transcript_id AT5G05850.1  
At5g05860	chr5:001765545	0.0	W/1765545-1766019,1766471-1767348	AT5G05860.1  CDS  gene_syn MJJ3.28, MJJ3_28, UGT76C2  gene UGT76C2  go_process metabolic process|GO:0008152||IEA  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cytokinin 7-beta-glucosyltransferase activity|GO:0047807|15342621|IDA  go_function trans-zeatin O-beta-D-glucosyltransferase activity|GO:0050403|15342621|IDA  go_function cis-zeatin O-beta-D-glucosyltransferase activity|GO:0050502|15342621|IDA  go_function cytokinin 9-beta-glucosyltransferase activity|GO:0080062|15342621|IDA  product UGT76C2; UDP-glycosyltransferase/ cis-zeatin O-beta-D-glucosyltransferase/ cytokinin 7-beta-glucosyltransferase/ cytokinin 9-beta-glucosyltransferase/ trans-zeatin O-beta-D-glucosyltransferase/ transferase, transferring glycosyl groups  note UGT76C2; FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT5G05880.1); Has 4858 Blast hits to 4839 proteins in 332 species: Archae - 0; Bacteria - 208; Metazoa - 1867; Fungi - 21; Plants - 2678; Viruses - 62; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT5G05860.1p  transcript_id AT5G05860.1  protein_id AT5G05860.1p  transcript_id AT5G05860.1  
At5g05870	chr5:001767683	0.0	W/1767683-1768169,1768270-1769177	AT5G05870.1  CDS  gene_syn K18J17.2, K18J17_2, UDP-glucosyl transferase 76C1, UGT76C1  gene UGT76C1  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cytokinin 7-beta-glucosyltransferase activity|GO:0047807|15342621|IDA  go_function trans-zeatin O-beta-D-glucosyltransferase activity|GO:0050403|15342621|IDA  go_function cis-zeatin O-beta-D-glucosyltransferase activity|GO:0050502|15342621|IDA  go_function cytokinin 9-beta-glucosyltransferase activity|GO:0080062|15342621|IDA  product UGT76C1 (UDP-glucosyl transferase 76C1); UDP-glycosyltransferase/ cis-zeatin O-beta-D-glucosyltransferase/ cytokinin 7-beta-glucosyltransferase/ cytokinin 9-beta-glucosyltransferase/ trans-zeatin O-beta-D-glucosyltransferase/ transferase, transferring glycosyl groups  note UDP-glucosyl transferase 76C1 (UGT76C1); FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT5G05880.1); Has 4917 Blast hits to 4898 proteins in 368 species: Archae - 0; Bacteria - 241; Metazoa - 1848; Fungi - 23; Plants - 2679; Viruses - 100; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT5G05870.1p  transcript_id AT5G05870.1  protein_id AT5G05870.1p  transcript_id AT5G05870.1  
At5g05880	chr5:001769648	0.0	W/1769648-1770125,1770638-1771515	AT5G05880.1  CDS  gene_syn K18J17.3, K18J17_3  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT5G05890.1); Has 4967 Blast hits to 4944 proteins in 351 species: Archae - 0; Bacteria - 267; Metazoa - 1883; Fungi - 20; Plants - 2678; Viruses - 85; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT5G05880.1p  transcript_id AT5G05880.1  protein_id AT5G05880.1p  transcript_id AT5G05880.1  
At5g05890	chr5:001772567	0.0	W/1772567-1773056,1773135-1774012	AT5G05890.1  CDS  gene_syn K18J17.4, K18J17_4  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT5G05880.1); Has 4839 Blast hits to 4816 proteins in 340 species: Archae - 0; Bacteria - 216; Metazoa - 1789; Fungi - 18; Plants - 2682; Viruses - 110; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT5G05890.1p  transcript_id AT5G05890.1  protein_id AT5G05890.1p  transcript_id AT5G05890.1  
At5g05900	chr5:001774513	0.0	W/1774513-1775002,1775519-1776381	AT5G05900.1  CDS  gene_syn K18J17.5, K18J17_5  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT5G05880.1); Has 5141 Blast hits to 5109 proteins in 361 species: Archae - 0; Bacteria - 211; Metazoa - 2077; Fungi - 17; Plants - 2680; Viruses - 123; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT5G05900.1p  transcript_id AT5G05900.1  protein_id AT5G05900.1p  transcript_id AT5G05900.1  
At5g05910	chr5:001776858	0.0	W/1776858-1777313	AT5G05910.1  CDS  gene_syn K18J17.6, K18J17_6  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G41440.1); Has 3990 Blast hits to 3977 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 1360; Fungi - 188; Plants - 1653; Viruses - 37; Other Eukaryotes - 752 (source: NCBI BLink).  protein_id AT5G05910.1p  transcript_id AT5G05910.1  protein_id AT5G05910.1p  transcript_id AT5G05910.1  
At5g05920	chr5:001779502	0.0	C/1779502-1779699,1779231-1779401,1778925-1779143,1778702-1778788,1778508-1778613,1777902-1778191	AT5G05920.2  CDS  gene_syn DEOXYHYPUSINE SYNTHASE, DHS, EDA22, K18J17.7, K18J17_7, embryo sac development arrest 22  gene DHS  function Encodes a deoxyhypusine synthase.  go_component cellular_component|GO:0005575||ND  go_process peptidyl-lysine modification to hypusine|GO:0008612||ISS  go_process embryo sac development|GO:0009553|15634699|IMP  product DHS (DEOXYHYPUSINE SYNTHASE)  note DEOXYHYPUSINE SYNTHASE (DHS); INVOLVED IN: embryo sac development, peptidyl-lysine modification to hypusine; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Deoxyhypusine synthase (InterPro:IPR002773); Has 1757 Blast hits to 1752 proteins in 359 species: Archae - 194; Bacteria - 162; Metazoa - 153; Fungi - 100; Plants - 121; Viruses - 0; Other Eukaryotes - 1027 (source: NCBI BLink).  protein_id AT5G05920.2p  transcript_id AT5G05920.2  protein_id AT5G05920.2p  transcript_id AT5G05920.2  
At5g05920	chr5:001779502	0.0	C/1779502-1779699,1779231-1779401,1778925-1779143,1778702-1778788,1778508-1778613,1777956-1778191,1777781-1777870	AT5G05920.1  CDS  gene_syn DEOXYHYPUSINE SYNTHASE, DHS, EDA22, K18J17.7, K18J17_7, embryo sac development arrest 22  gene DHS  function Encodes a deoxyhypusine synthase.  go_component cellular_component|GO:0005575||ND  go_process peptidyl-lysine modification to hypusine|GO:0008612||ISS  go_process embryo sac development|GO:0009553|15634699|IMP  product DHS (DEOXYHYPUSINE SYNTHASE)  note DEOXYHYPUSINE SYNTHASE (DHS); INVOLVED IN: embryo sac development, peptidyl-lysine modification to hypusine; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Deoxyhypusine synthase (InterPro:IPR002773); Has 1891 Blast hits to 1881 proteins in 370 species: Archae - 194; Bacteria - 186; Metazoa - 158; Fungi - 100; Plants - 121; Viruses - 0; Other Eukaryotes - 1132 (source: NCBI BLink).  protein_id AT5G05920.1p  transcript_id AT5G05920.1  protein_id AT5G05920.1p  transcript_id AT5G05920.1  
At5g05930	chr5:001782486	0.0	C/1782486-1782532,1782269-1782328,1782018-1782129,1781758-1781832,1781402-1781490,1781090-1781151,1780772-1780844,1780395-1780470,1780270-1780308	AT5G05930.2  CDS  gene_syn K18J17.8, K18J17_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product guanylyl cyclase-related (GC1)  note guanylyl cyclase-related (GC1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Guanylyl cyclase (InterPro:IPR018616); Has 140 Blast hits to 140 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 103; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT5G05930.2p  transcript_id AT5G05930.2  protein_id AT5G05930.2p  transcript_id AT5G05930.2  
At5g05930	chr5:001782486	0.0	C/1782486-1782659,1782269-1782393,1782018-1782129,1781758-1781832,1781402-1781490,1781090-1781151,1780772-1780844,1780395-1780470,1780270-1780308	AT5G05930.1  CDS  gene_syn K18J17.8, K18J17_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product guanylyl cyclase-related (GC1)  note guanylyl cyclase-related (GC1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Guanylyl cyclase (InterPro:IPR018616); Has 146 Blast hits to 146 proteins in 53 species: Archae - 1; Bacteria - 0; Metazoa - 104; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G05930.1p  transcript_id AT5G05930.1  protein_id AT5G05930.1p  transcript_id AT5G05930.1  
At5g05940	chr5:001786028	0.0	W/1786028-1786331,1786428-1786544,1786629-1786783,1786853-1786927,1787012-1787302,1787385-1787747,1787833-1788363	AT5G05940.1  CDS  gene_syn ATROPGEF5, K18J17.10, K18J17_10, ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 5, ROPGEF5  gene ROPGEF5  function Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.  go_process biological_process|GO:0008150||ND  go_function Rho guanyl-nucleotide exchange factor activity|GO:0005089|15980860|ISS  product ROPGEF5 (ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 5); Rho guanyl-nucleotide exchange factor  note ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 5 (ROPGEF5); FUNCTIONS IN: Rho guanyl-nucleotide exchange factor activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: ROPGEF7; Rho guanyl-nucleotide exchange factor (TAIR:AT5G02010.1); Has 172 Blast hits to 171 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 172; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G05940.1p  transcript_id AT5G05940.1  protein_id AT5G05940.1p  transcript_id AT5G05940.1  
At5g05945	chr5:001788651	0.0	W/1788651-1788722	AT5G05945.1  tRNA  gene_syn 67592.TRNA-ASP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asp (anticodon: GTC)  transcript_id AT5G05945.1  
At5g05950	chr5:001788814	0.0	W/1788814-1789341	AT5G05950.1  CDS  gene_syn K18J17.12, K18J17_12, MEE60, maternal effect embryo arrest 60  gene MEE60  go_component endomembrane system|GO:0012505||IEA  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function molecular_function|GO:0003674||ND  product MEE60 (maternal effect embryo arrest 60)  note maternal effect embryo arrest 60 (MEE60); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46890.1); Has 64 Blast hits to 64 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G05950.1p  transcript_id AT5G05950.1  protein_id AT5G05950.1p  transcript_id AT5G05950.1  
At5g05960	chr5:001790256	0.0	W/1790256-1790589,1790678-1790694	AT5G05960.1  CDS  gene_syn K18J17.13, K18J17_13  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT3G53980.2); Has 80 Blast hits to 80 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G05960.1p  transcript_id AT5G05960.1  protein_id AT5G05960.1p  transcript_id AT5G05960.1  
At5g05965	chr5:001792367	0.0	C/1792367-1792495,1791826-1791889,1791177-1791362,1791059-1791075	AT5G05965.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 40 Blast hits to 40 proteins in 8 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G05965.1p  transcript_id AT5G05965.1  protein_id AT5G05965.1p  transcript_id AT5G05965.1  
At5g05970	chr5:001795464	0.0	W/1795464-1795626,1795976-1796088,1796174-1796434,1796525-1796629,1796812-1796877,1797063-1797284,1797547-1798053,1798251-1798877,1798958-1799134,1799206-1799313	AT5G05970.2  CDS  gene_syn K18J17.16, K18J17_16, NEDD1, NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1  gene NEDD1  function a WD40 repeat protein related to the animal NEDD1/GCP-WD protein, which interacts with the g-tubulin complex. Plays a critical role in MT organization during mitosis  go_component kinetochore microtubule|GO:0005828|19383896|IDA  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process cell plate formation|GO:0000919|19383896|IMP  go_process embryo sac development|GO:0009553|19383896|IMP  go_process pollen development|GO:0009555|19383896|IMP  go_process positive regulation of cytokinesis|GO:0032467|19383896|IMP  go_process regulation of mitotic spindle organization|GO:0060236|19383896|IMP  go_function nucleotide binding|GO:0000166||ISS  product NEDD1 (NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1); nucleotide binding  note NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1 (NEDD1); FUNCTIONS IN: nucleotide binding; INVOLVED IN: in 6 processes; LOCATED IN: kinetochore microtubule, CUL4 RING ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G23430.2); Has 18564 Blast hits to 11869 proteins in 444 species: Archae - 20; Bacteria - 3242; Metazoa - 7894; Fungi - 3312; Plants - 1447; Viruses - 0; Other Eukaryotes - 2649 (source: NCBI BLink).  protein_id AT5G05970.2p  transcript_id AT5G05970.2  protein_id AT5G05970.2p  transcript_id AT5G05970.2  
At5g05970	chr5:001795464	0.0	W/1795464-1795626,1795976-1796088,1796174-1796434,1796525-1796629,1796812-1796877,1797063-1797284,1797547-1798053,1798251-1798877,1798961-1799134,1799206-1799313	AT5G05970.1  CDS  gene_syn K18J17.16, K18J17_16, NEDD1, NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1  gene NEDD1  function a WD40 repeat protein related to the animal NEDD1/GCP-WD protein, which interacts with the g-tubulin complex. Plays a critical role in MT organization during mitosis  go_component kinetochore microtubule|GO:0005828|19383896|IDA  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process cell plate formation|GO:0000919|19383896|IMP  go_process embryo sac development|GO:0009553|19383896|IMP  go_process pollen development|GO:0009555|19383896|IMP  go_process positive regulation of cytokinesis|GO:0032467|19383896|IMP  go_process regulation of mitotic spindle organization|GO:0060236|19383896|IMP  go_function nucleotide binding|GO:0000166||ISS  product NEDD1 (NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1); nucleotide binding  note NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1 (NEDD1); FUNCTIONS IN: nucleotide binding; INVOLVED IN: in 6 processes; LOCATED IN: kinetochore microtubule, CUL4 RING ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G23430.2); Has 18948 Blast hits to 11888 proteins in 446 species: Archae - 20; Bacteria - 3277; Metazoa - 7939; Fungi - 3329; Plants - 1465; Viruses - 0; Other Eukaryotes - 2918 (source: NCBI BLink).  protein_id AT5G05970.1p  transcript_id AT5G05970.1  protein_id AT5G05970.1p  transcript_id AT5G05970.1  
At5g05980	chr5:001804165	0.0	C/1804165-1804177,1803953-1804068,1803788-1803853,1803126-1803235,1802895-1802955,1802339-1802422,1802163-1802219,1801839-1801899,1801617-1801663,1801464-1801541,1800994-1801158,1800618-1800890,1800370-1800448,1800109-1800264,1799907-1800022,1799738-1799797	AT5G05980.2  CDS  gene_syn A. THALIANA DHFS-FPGS HOMOLOG B, ATDFB, DFB, DHFS-FPGS HOMOLOG B, K18J17.17, K18J17_17  gene ATDFB  go_component chloroplast stroma|GO:0009570|11752472|IDA  go_process one-carbon compound metabolic process|GO:0006730|11752472|TAS  go_function tetrahydrofolylpolyglutamate synthase activity|GO:0004326|11752472|IGI  product ATDFB (A. THALIANA DHFS-FPGS HOMOLOG B); tetrahydrofolylpolyglutamate synthase  note A. THALIANA DHFS-FPGS HOMOLOG B (ATDFB); FUNCTIONS IN: tetrahydrofolylpolyglutamate synthase activity; INVOLVED IN: one-carbon compound metabolic process; LOCATED IN: chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Folylpolyglutamate synthetase, conserved site (InterPro:IPR018109), Mur ligase, central (InterPro:IPR013221), Mur ligase, C-terminal (InterPro:IPR004101), Folylpolyglutamate synthetase (InterPro:IPR001645); BEST Arabidopsis thaliana protein match is: ATDFD (A. THALIANA DHFS-FPGS HOMOLOG D); tetrahydrofolylpolyglutamate synthase (TAIR:AT3G55630.3); Has 5063 Blast hits to 5061 proteins in 1340 species: Archae - 23; Bacteria - 2465; Metazoa - 145; Fungi - 231; Plants - 66; Viruses - 0; Other Eukaryotes - 2133 (source: NCBI BLink).  protein_id AT5G05980.2p  transcript_id AT5G05980.2  protein_id AT5G05980.2p  transcript_id AT5G05980.2  
At5g05980	chr5:001804295	0.0	C/1804295-1804441,1804165-1804204,1803953-1804068,1803788-1803853,1803126-1803235,1802895-1802955,1802339-1802422,1802163-1802219,1801839-1801899,1801617-1801663,1801464-1801541,1800994-1801158,1800618-1800890,1800370-1800448,1800109-1800264,1799907-1800022,1799738-1799797	AT5G05980.1  CDS  gene_syn A. THALIANA DHFS-FPGS HOMOLOG B, ATDFB, DFB, DHFS-FPGS HOMOLOG B, K18J17.17, K18J17_17  gene ATDFB  go_component chloroplast stroma|GO:0009570|11752472|IDA  go_process one-carbon compound metabolic process|GO:0006730|11752472|TAS  go_function tetrahydrofolylpolyglutamate synthase activity|GO:0004326|11752472|IGI  product ATDFB (A. THALIANA DHFS-FPGS HOMOLOG B); tetrahydrofolylpolyglutamate synthase  note A. THALIANA DHFS-FPGS HOMOLOG B (ATDFB); FUNCTIONS IN: tetrahydrofolylpolyglutamate synthase activity; INVOLVED IN: one-carbon compound metabolic process; LOCATED IN: chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Folylpolyglutamate synthetase, conserved site (InterPro:IPR018109), Mur ligase, central (InterPro:IPR013221), Mur ligase, C-terminal (InterPro:IPR004101), Folylpolyglutamate synthetase (InterPro:IPR001645); BEST Arabidopsis thaliana protein match is: ATDFD (A. THALIANA DHFS-FPGS HOMOLOG D); tetrahydrofolylpolyglutamate synthase (TAIR:AT3G55630.3); Has 5065 Blast hits to 5063 proteins in 1340 species: Archae - 23; Bacteria - 2465; Metazoa - 145; Fungi - 231; Plants - 66; Viruses - 0; Other Eukaryotes - 2135 (source: NCBI BLink).  protein_id AT5G05980.1p  transcript_id AT5G05980.1  protein_id AT5G05980.1p  transcript_id AT5G05980.1  
At5g05985	chr5:001804616	0.0	W/1804616-1804689	AT5G05985.1  tRNA  gene_syn 67592.TRNA-VAL-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Val (anticodon: CAC)  transcript_id AT5G05985.1  
At5g05987	chr5:001804881	0.0	W/1804881-1805038,1805135-1805175,1805284-1805362,1805949-1806035,1806124-1806212,1806305-1806376,1806456-1806559	AT5G05987.1  CDS  gene_syn PRA1.A2, PRENYLATED RAB ACCEPTOR 1.A2  gene PRA1.A2  go_component endoplasmic reticulum|GO:0005783|18583532|IDA  go_process vesicle-mediated transport|GO:0016192|18583532|IDA  go_function molecular_function|GO:0003674||ND  product PRA1.A2 (PRENYLATED RAB ACCEPTOR 1.A2)  note PRENYLATED RAB ACCEPTOR 1.A2 (PRA1.A2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: PRA1.A3 (PRENYLATED RAB ACCEPTOR 1.A3) (TAIR:AT3G11397.1); Has 209 Blast hits to 209 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 134; Fungi - 6; Plants - 67; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G05987.1p  transcript_id AT5G05987.1  protein_id AT5G05987.1p  transcript_id AT5G05987.1  
At5g05990	chr5:001807653	0.0	C/1807653-1807895,1807147-1807523,1806911-1807070	AT5G05990.1  CDS  gene_syn K18J17.19, K18J17_19  go_component mitochondrion|GO:0005739||IEA  go_component mitochondrial matrix|GO:0005759||IEA  go_component mitochondrial matrix|GO:0005759||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial glycoprotein family protein / MAM33 family protein  note mitochondrial glycoprotein family protein / MAM33 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, mitochondrial matrix; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial glycoprotein (InterPro:IPR003428); BEST Arabidopsis thaliana protein match is: mitochondrial glycoprotein family protein / MAM33 family protein (TAIR:AT3G55605.1); Has 285 Blast hits to 285 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 33; Fungi - 85; Plants - 119; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT5G05990.1p  transcript_id AT5G05990.1  protein_id AT5G05990.1p  transcript_id AT5G05990.1  
At5g06000	chr5:001808169	0.0	W/1808169-1808499,1809147-1809742	AT5G06000.1  CDS  gene_syn ATEIF3G2, EIF3G2, K18J17.20, K18J17_20  gene EIF3G2  function One of the 2 genes that code for the G subunit of eukaryotic initiation factor 3 (EIF3).  go_component eukaryotic translation initiation factor 3 complex|GO:0005852|11042177|ISS  go_process translational initiation|GO:0006413||TAS  go_function RNA binding|GO:0003723||ISS  go_function translation initiation factor activity|GO:0003743|11042177|ISS  go_function translation initiation factor activity|GO:0003743||ISS  product EIF3G2; RNA binding / translation initiation factor  note EIF3G2; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: eukaryotic translation initiation factor 3 complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Translation initiation factor 3, RNA-binding subunit (InterPro:IPR017334), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3G / eIF3g (TAIR:AT3G11400.1); Has 11587 Blast hits to 9387 proteins in 529 species: Archae - 4; Bacteria - 801; Metazoa - 6767; Fungi - 1247; Plants - 1619; Viruses - 0; Other Eukaryotes - 1149 (source: NCBI BLink).  protein_id AT5G06000.1p  transcript_id AT5G06000.1  protein_id AT5G06000.1p  transcript_id AT5G06000.1  
At5g06010	chr5:001809940	0.0	W/1809940-1810263	AT5G06010.1  CDS  gene_syn K18J17.21, K18J17_21  go_component chloroplast|GO:0009507||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41761.1); Has 45 Blast hits to 45 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G06010.1p  transcript_id AT5G06010.1  protein_id AT5G06010.1p  transcript_id AT5G06010.1  
At5g06020	chr5:001811938	0.0	W/1811938-1812393	AT5G06020.1  CDS  gene_syn K18J17.22, K18J17_22  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product self-incompatibility protein-related  note self-incompatibility protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: self-incompatibility protein-related (TAIR:AT5G06030.1); Has 92 Blast hits to 89 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G06020.1p  transcript_id AT5G06020.1  protein_id AT5G06020.1p  transcript_id AT5G06020.1  
At5g06030	chr5:001813919	0.0	W/1813919-1814371	AT5G06030.1  CDS  gene_syn K18J17.23, K18J17_23  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product self-incompatibility protein-related  note self-incompatibility protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: self-incompatibility protein-related (TAIR:AT5G06020.1); Has 60 Blast hits to 60 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G06030.1p  transcript_id AT5G06030.1  protein_id AT5G06030.1p  transcript_id AT5G06030.1  
At5g06040	chr5:001815128	0.0	W/1815128-1815356,1815931-1816037	AT5G06040.1  CDS  gene_syn K18J17.24, K18J17_24  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product self-incompatibility protein-related  note self-incompatibility protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: self-incompatibility protein-related (TAIR:AT5G06030.1); Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G06040.1p  transcript_id AT5G06040.1  protein_id AT5G06040.1p  transcript_id AT5G06040.1  
At5g06043	chr5:001817137	0.0	C/1817137-1817505	AT5G06043.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G06043.1p  transcript_id AT5G06043.1  protein_id AT5G06043.1p  transcript_id AT5G06043.1  
At5g06050	chr5:001820196	0.0	W/1820196-1820837,1820907-1821056,1821142-1821412,1821709-1821819,1822127-1822286,1822499-1822756,1822846-1822968,1823144-1823221,1823317-1823572	AT5G06050.1  CDS  gene_syn K18J17.25, K18J17_25  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product dehydration-responsive protein-related  note dehydration-responsive protein-related; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive family protein (TAIR:AT2G39750.1); Has 497 Blast hits to 489 proteins in 40 species: Archae - 0; Bacteria - 24; Metazoa - 2; Fungi - 0; Plants - 468; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G06050.1p  transcript_id AT5G06050.1  protein_id AT5G06050.1p  transcript_id AT5G06050.1  
At5g06060	chr5:001825763	0.0	C/1825763-1825833,1825210-1825417,1824598-1824814,1824410-1824516,1824066-1824257	AT5G06060.1  CDS  gene_syn K16F4.2, K16F4_2  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product tropinone reductase, putative / tropine dehydrogenase, putative  note tropinone reductase, putative / tropine dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: tropinone reductase, putative / tropine dehydrogenase, putative (TAIR:AT2G29290.2); Has 88350 Blast hits to 88156 proteins in 2259 species: Archae - 471; Bacteria - 47428; Metazoa - 5087; Fungi - 4564; Plants - 1650; Viruses - 7; Other Eukaryotes - 29143 (source: NCBI BLink).  protein_id AT5G06060.1p  transcript_id AT5G06060.1  protein_id AT5G06060.1p  transcript_id AT5G06060.1  
At5g06070	chr5:001828426	0.0	C/1828426-1829106	AT5G06070.1  CDS  gene_syn RAB, RABBIT EARS, RBE  gene RBE  function Isolated as a mutation defective in petal development with specific effects on adaxial petals which are filamentous or absent. Encodes a Superman (SUP) like protein with zinc finger motifs. Transcript is detected in petal primordia and protein is localized to the nucleus.  go_component nucleus|GO:0005634|14681191|IDA  go_process response to cold|GO:0009409|8443352|IEP  go_process regulation of meristem organization|GO:0009934||NAS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process petal development|GO:0048441|14681191|IMP  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|14681191|ISS  go_function zinc ion binding|GO:0008270||ISS  product RBE (RABBIT EARS); nucleic acid binding / transcription factor/ zinc ion binding  note RABBIT EARS (RBE); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of meristem organization, response to cold, petal development, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: outer integument, inner integument, petal primordium, flower, pedicel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: ZFP10 (ZINC-FINGER PROTEIN 10); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT2G37740.1); Has 408 Blast hits to 406 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 408; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G06070.1p  transcript_id AT5G06070.1  protein_id AT5G06070.1p  transcript_id AT5G06070.1  
At5g06080	chr5:001831149	0.0	C/1831149-1831427,1830796-1831050	AT5G06080.1  CDS  gene_syn K16F4.4, K16F4_4, LBD33, LOB DOMAIN-CONTAINING PROTEIN 33  gene LBD33  go_process biological_process|GO:0008150||ND  product LBD33 (LOB DOMAIN-CONTAINING PROTEIN 33)  note LOB DOMAIN-CONTAINING PROTEIN 33 (LBD33); INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD29 (LATERAL ORGAN BOUNDARIES-DOMAIN 29) (TAIR:AT3G58190.1); Has 561 Blast hits to 558 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 561; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G06080.1p  transcript_id AT5G06080.1  protein_id AT5G06080.1p  transcript_id AT5G06080.1  
At5g06090	chr5:001835106	0.0	W/1835106-1835687,1835802-1836722	AT5G06090.1  CDS  gene_syn ATGPAT7, GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 7, GPAT7, K16F4.5, K16F4_5  gene GPAT7  function Encodes a protein with glycerol-3-phosphate acyltransferase activity.  go_process metabolic process|GO:0008152||IEA  go_process metabolic process|GO:0008152||ISS  go_function 1-acylglycerol-3-phosphate O-acyltransferase activity|GO:0003841|12897259|IGI  go_function acyltransferase activity|GO:0008415||ISS  product GPAT7 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 7); 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase  note GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 7 (GPAT7); FUNCTIONS IN: 1-acylglycerol-3-phosphate O-acyltransferase activity, acyltransferase activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: GPAT5 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 5); 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase/ organic anion transmembrane transporter (TAIR:AT3G11430.1); Has 215 Blast hits to 210 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 22; Fungi - 0; Plants - 185; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G06090.1p  transcript_id AT5G06090.1  protein_id AT5G06090.1p  transcript_id AT5G06090.1  
At5g06100	chr5:001838555	0.0	W/1838555-1838899,1838987-1839953,1840136-1840386	AT5G06100.2  CDS  gene_syn ATMYB33, K16F4.6, K16F4_6, MYB DOMAIN PROTEIN 33, MYB33  gene MYB33  function Encodes a member of the myb family of transcription factors (MYB33), contains Pfam profile: PF00249 myb DNA-binding domain. Double mutants with MYB65 are male sterile- anthers are small, pollen development is defective. Spatial expression appears to be under the control of miR159, contains a target site for this micro RNA. When the target site is mutated , expression is detected in leaves, roots, anther filament, pistil. The expression of a translational fusion is specific to anther locules in contrast to constructs lacking the miR159 target site. Phenotype is conditional and can be restored by lower temperature or higher light intensity.  go_component nucleus|GO:0005634|11743113|TAS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process gibberellic acid mediated signaling|GO:0009740|11743113|TAS  go_process positive regulation of abscisic acid mediated signaling|GO:0009789|17217461|IMP  go_process pollen sperm cell differentiation|GO:0048235|15722475|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11743113|TAS  product MYB33 (MYB DOMAIN PROTEIN 33); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 33 (MYB33); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: positive regulation of abscisic acid mediated signaling, pollen sperm cell differentiation, regulation of transcription, DNA-dependent, gibberellic acid mediated signaling; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, GAMYB (InterPro:IPR016310), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: MYB65 (MYB DOMAIN PROTEIN 65); DNA binding / transcription factor (TAIR:AT3G11440.1); Has 6331 Blast hits to 5937 proteins in 355 species: Archae - 0; Bacteria - 0; Metazoa - 604; Fungi - 286; Plants - 3889; Viruses - 3; Other Eukaryotes - 1549 (source: NCBI BLink).  protein_id AT5G06100.2p  transcript_id AT5G06100.2  protein_id AT5G06100.2p  transcript_id AT5G06100.2  
At5g06100	chr5:001838555	0.0	W/1838555-1838899,1838987-1839953,1840136-1840386	AT5G06100.3  CDS  gene_syn ATMYB33, K16F4.6, K16F4_6, MYB DOMAIN PROTEIN 33, MYB33  gene MYB33  function Encodes a member of the myb family of transcription factors (MYB33), contains Pfam profile: PF00249 myb DNA-binding domain. Double mutants with MYB65 are male sterile- anthers are small, pollen development is defective. Spatial expression appears to be under the control of miR159, contains a target site for this micro RNA. When the target site is mutated , expression is detected in leaves, roots, anther filament, pistil. The expression of a translational fusion is specific to anther locules in contrast to constructs lacking the miR159 target site. Phenotype is conditional and can be restored by lower temperature or higher light intensity.  go_component nucleus|GO:0005634|11743113|TAS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process gibberellic acid mediated signaling|GO:0009740|11743113|TAS  go_process positive regulation of abscisic acid mediated signaling|GO:0009789|17217461|IMP  go_process pollen sperm cell differentiation|GO:0048235|15722475|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11743113|TAS  product MYB33 (MYB DOMAIN PROTEIN 33); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 33 (MYB33); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: positive regulation of abscisic acid mediated signaling, pollen sperm cell differentiation, regulation of transcription, DNA-dependent, gibberellic acid mediated signaling; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, GAMYB (InterPro:IPR016310), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: MYB65 (MYB DOMAIN PROTEIN 65); DNA binding / transcription factor (TAIR:AT3G11440.1); Has 6331 Blast hits to 5937 proteins in 355 species: Archae - 0; Bacteria - 0; Metazoa - 604; Fungi - 286; Plants - 3889; Viruses - 3; Other Eukaryotes - 1549 (source: NCBI BLink).  protein_id AT5G06100.3p  transcript_id AT5G06100.3  protein_id AT5G06100.3p  transcript_id AT5G06100.3  
At5g06100	chr5:001838555	0.0	W/1838555-1838899,1838987-1839997	AT5G06100.1  CDS  gene_syn ATMYB33, K16F4.6, K16F4_6, MYB DOMAIN PROTEIN 33, MYB33  gene MYB33  function Encodes a member of the myb family of transcription factors (MYB33), contains Pfam profile: PF00249 myb DNA-binding domain. Double mutants with MYB65 are male sterile- anthers are small, pollen development is defective. Spatial expression appears to be under the control of miR159, contains a target site for this micro RNA. When the target site is mutated , expression is detected in leaves, roots, anther filament, pistil. The expression of a translational fusion is specific to anther locules in contrast to constructs lacking the miR159 target site. Phenotype is conditional and can be restored by lower temperature or higher light intensity.  go_component nucleus|GO:0005634|11743113|TAS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process gibberellic acid mediated signaling|GO:0009740|11743113|TAS  go_process positive regulation of abscisic acid mediated signaling|GO:0009789|17217461|IMP  go_process pollen sperm cell differentiation|GO:0048235|15722475|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11743113|TAS  product MYB33 (MYB DOMAIN PROTEIN 33); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 33 (MYB33); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: positive regulation of abscisic acid mediated signaling, pollen sperm cell differentiation, regulation of transcription, DNA-dependent, gibberellic acid mediated signaling; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB65 (MYB DOMAIN PROTEIN 65); DNA binding / transcription factor (TAIR:AT3G11440.1); Has 6317 Blast hits to 5936 proteins in 355 species: Archae - 0; Bacteria - 0; Metazoa - 593; Fungi - 286; Plants - 3887; Viruses - 3; Other Eukaryotes - 1548 (source: NCBI BLink).  protein_id AT5G06100.1p  transcript_id AT5G06100.1  protein_id AT5G06100.1p  transcript_id AT5G06100.1  
At5g06110	chr5:001841009	0.0	C/1841009-1843000	AT5G06110.1  CDS  gene_syn K16F4.7, K16F4_7  go_function DNA binding|GO:0003677||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein / cell division protein-related  note DNAJ heat shock N-terminal domain-containing protein / cell division protein-related; FUNCTIONS IN: heat shock protein binding, DNA binding; INVOLVED IN: protein folding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), MYB-like (InterPro:IPR017877), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein / cell division protein-related (TAIR:AT3G11450.1); Has 30941 Blast hits to 21178 proteins in 1608 species: Archae - 101; Bacteria - 5693; Metazoa - 11416; Fungi - 3019; Plants - 1271; Viruses - 136; Other Eukaryotes - 9305 (source: NCBI BLink).  protein_id AT5G06110.1p  transcript_id AT5G06110.1  protein_id AT5G06110.1p  transcript_id AT5G06110.1  
At5g06120	chr5:001844797	0.0	W/1844797-1844803,1845292-1845549,1845646-1845806,1845922-1845987,1846455-1846572,1846781-1846890,1847003-1847098,1847353-1847476,1847726-1847793,1848070-1848156,1848322-1848474,1848562-1848657,1848780-1848839,1848934-1849052,1849146-1849233,1849535-1849639,1849718-1849819,1849908-1849960,1850054-1850117,1850213-1850347,1850571-1850683,1850767-1850860,1851041-1851260,1851351-1851481,1851646-1851792,1851917-1852045,1852139-1852237,1852336-1852374,1852443-1852601	AT5G06120.1  CDS  gene_syn K16F4.8, K16F4_8  go_component nucleus|GO:0005634||IEA  go_component nuclear pore|GO:0005643||IEA  go_component cytoplasm|GO:0005737||IEA  go_process protein import into nucleus, docking|GO:0000059||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function binding|GO:0005488||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component nucleus|GO:0005634||ISS  go_component nuclear pore|GO:0005643||ISS  go_component cytoplasm|GO:0005737||ISS  go_process protein import into nucleus, docking|GO:0000059||ISS  go_function protein transporter activity|GO:0008565||ISS  product Ran-binding protein, putative  note Ran-binding protein, putative; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04490.1); Has 415 Blast hits to 389 proteins in 96 species: Archae - 0; Bacteria - 0; Metazoa - 248; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).  protein_id AT5G06120.1p  transcript_id AT5G06120.1  protein_id AT5G06120.1p  transcript_id AT5G06120.1  
At5g06125	chr5:001853302	0.0	C/1853302-1853381	AT5G06125.1  tRNA  gene_syn 67593.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: TAG)  transcript_id AT5G06125.1  
At5g06130	chr5:001855109	0.0	C/1855109-1855297,1854926-1855012,1854424-1854500,1854168-1854295,1853927-1854063,1853754-1853831	AT5G06130.1  CDS  gene_syn K16F4.10, K16F4_10  product chaperone protein dnaJ-related  note chaperone protein dnaJ-related; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G61670.2); Has 65 Blast hits to 65 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G06130.1p  transcript_id AT5G06130.1  protein_id AT5G06130.1p  transcript_id AT5G06130.1  
At5g06130	chr5:001855561	0.0	C/1855561-1855763,1855109-1855346,1854926-1855012,1854424-1854500,1854168-1854295,1853927-1854063,1853754-1853831	AT5G06130.2  CDS  gene_syn K16F4.10, K16F4_10  go_component chloroplast|GO:0009507||IEA  product chaperone protein dnaJ-related  note chaperone protein dnaJ-related; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G61670.2); Has 65 Blast hits to 65 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G06130.2p  transcript_id AT5G06130.2  protein_id AT5G06130.2p  transcript_id AT5G06130.2  
At5g06140	chr5:001858600	0.0	C/1858600-1858752,1858251-1858386,1857771-1857904,1857553-1857624,1857293-1857452,1857039-1857172,1856834-1856902,1856651-1856730,1856508-1856568,1856212-1856421	AT5G06140.1  CDS  gene_syn ARABIDOPSIS THALIANA SORTING NEXIN 1, ATSNX1, K16F4.11, K16F4_11, SNX1, SORTING NEXIN 1  gene SNX1  function Homolog of yeast retromer subunit VPS5. Part of a retromer-like protein complex involved in endosome to lysosome protein transport. In roots it co-localizes with the PIN2 auxin efflux carrier. Involved in endocytic sorting of membrane proteins including PIN2, BOR1 and BRI1.  go_function protein binding|GO:0005515||IEA  go_function phosphoinositide binding|GO:0035091||IEA  go_component endosome|GO:0005768|16936718|IDA  go_component multivesicular body|GO:0005771|16582012|IDA  go_component microsome|GO:0005792|16582012|IDA  go_component membrane|GO:0016020|16582012|IDA  go_component retromer complex|GO:0030904|16582012|IDA  go_component retromer complex|GO:0030904|16582012|ISS  go_process protein targeting to vacuole|GO:0006623|19004783|IMP  go_process Golgi to vacuole transport|GO:0006896|17999644|IDA  go_process intracellular signaling cascade|GO:0007242||ISS  go_process endosome to lysosome transport|GO:0008333|16582012|ISS  go_process endosome to lysosome transport|GO:0008333|17999644|TAS  go_process positive gravitropism|GO:0009958|16936718|IMP  go_process auxin homeostasis|GO:0010252|16936718|IDA  go_process root development|GO:0048364|16936718|IMP  product SNX1 (SORTING NEXIN 1); phosphoinositide binding / protein binding  note SORTING NEXIN 1 (SNX1); FUNCTIONS IN: protein binding, phosphoinositide binding; INVOLVED IN: in 7 processes; LOCATED IN: endosome, retromer complex, microsome, membrane, multivesicular body; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vps5 C-terminal (InterPro:IPR015404), Phox-like (InterPro:IPR001683); BEST Arabidopsis thaliana protein match is: SNX2b (SORTING NEXIN 2b); phosphoinositide binding / protein binding (TAIR:AT5G07120.1); Has 2559 Blast hits to 2557 proteins in 228 species: Archae - 8; Bacteria - 22; Metazoa - 1584; Fungi - 559; Plants - 86; Viruses - 0; Other Eukaryotes - 300 (source: NCBI BLink).  protein_id AT5G06140.1p  transcript_id AT5G06140.1  protein_id AT5G06140.1p  transcript_id AT5G06140.1  
At5g06150	chr5:001861534	0.0	C/1861534-1861570,1860318-1861111,1860082-1860240,1859811-1859989,1859542-1859710	AT5G06150.1  CDS  gene_syn CYC1BAT, CYCB1;2, CYCLIN B1;2, MBL20.2, MBL20_2, cyclin B 1;2  gene CYC1BAT  function Encodes a cyclin whose expression is reduced in response to high salt.  go_component nucleus|GO:0005634||IEA  go_process response to salt stress|GO:0009651|15181207|IEP  go_process response to gamma radiation|GO:0010332|17227549|IEP  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase regulator activity|GO:0016538||ISS  product CYC1BAT; cyclin-dependent protein kinase regulator  note CYC1BAT; FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle, response to salt stress, response to gamma radiation; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCB1;3 (CYCLIN B1;3); cyclin-dependent protein kinase regulator (TAIR:AT3G11520.1); Has 3395 Blast hits to 3394 proteins in 301 species: Archae - 0; Bacteria - 0; Metazoa - 1738; Fungi - 381; Plants - 741; Viruses - 35; Other Eukaryotes - 500 (source: NCBI BLink).  protein_id AT5G06150.1p  transcript_id AT5G06150.1  protein_id AT5G06150.1p  transcript_id AT5G06150.1  
At5g06160	chr5:001866125	0.0	C/1866125-1866298,1865582-1865695,1865008-1865112,1864756-1864898,1864556-1864652,1863980-1864129,1863829-1863900,1863387-1863545,1863083-1863289,1862860-1863006,1862623-1862769	AT5G06160.1  CDS  gene_syn ATO, ATROPOS, MBL20.3, MBL20_3  gene ATO  function Encodes a protein with similarity to pre-mRNA splicing factor SF3a60 that is involved in gametic cell fate determination. Loss of function results in the ectopic expression of egg cell makers suggesting a role in restriction of gametic cell fate. Expressed strongly in gametophytes and weakly in sporophytes.  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_process regulation of embryo sac egg cell differentiation|GO:0045694|18702672|IMP  product ATO (ATROPOS); nucleic acid binding / zinc ion binding  note ATROPOS (ATO); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of embryo sac egg cell differentiation; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type matrin (InterPro:IPR000690); Has 418 Blast hits to 414 proteins in 154 species: Archae - 0; Bacteria - 0; Metazoa - 205; Fungi - 87; Plants - 45; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).  protein_id AT5G06160.1p  transcript_id AT5G06160.1  protein_id AT5G06160.1p  transcript_id AT5G06160.1  
At5g06170	chr5:001869791	0.0	W/1869791-1871032,1871130-1871193,1871550-1871719	AT5G06170.1  CDS  gene_syn ATSUC9, MBL20.5, MBL20_5, Sucrose-proton symporter 9  gene ATSUC9  function sucrose symporter with hight affinity for sucrose (K0.5=0.066 +/- 0.025mM), that can also transport a wide range of glucosides.  go_component plasma membrane|GO:0005886|17098854|IDA  go_component plasma membrane|GO:0005886|18359840|IDA  go_component membrane|GO:0016020||ISS  go_process flower development|GO:0009908|17098854|IMP  go_process regulation of flower development|GO:0009909|18359840|IMP  go_process glucoside transport|GO:0042946|17098854|IDA  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function sucrose:hydrogen symporter activity|GO:0008506||ISS  go_function sucrose transmembrane transporter activity|GO:0008515|17098854|IDA  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  go_function sugar transmembrane transporter activity|GO:0051119|18359840|IDA  product ATSUC9 (Sucrose-proton symporter 9); carbohydrate transmembrane transporter/ sucrose transmembrane transporter/ sucrose:hydrogen symporter/ sugar transmembrane transporter/ sugar:hydrogen symporter  note Sucrose-proton symporter 9 (ATSUC9); FUNCTIONS IN: sucrose transmembrane transporter activity, carbohydrate transmembrane transporter activity, sugar transmembrane transporter activity, sugar:hydrogen symporter activity, sucrose:hydrogen symporter activity; INVOLVED IN: flower development, glucoside transport, regulation of flower development; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: embryo, pollen tube, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Sucrose/H+ symporter, plant (InterPro:IPR005989), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ATSUC8 (Sucrose-proton symporter 8); carbohydrate transmembrane transporter/ sucrose:hydrogen symporter/ sugar:hydrogen symporter (TAIR:AT2G14670.1); Has 1679 Blast hits to 1522 proteins in 345 species: Archae - 28; Bacteria - 545; Metazoa - 387; Fungi - 133; Plants - 256; Viruses - 0; Other Eukaryotes - 330 (source: NCBI BLink).  protein_id AT5G06170.1p  transcript_id AT5G06170.1  protein_id AT5G06170.1p  transcript_id AT5G06170.1  
At5g06180	chr5:001873197	0.0	W/1873197-1873373,1873452-1873563,1873642-1873711,1873793-1873889,1874063-1874212,1874305-1874431,1874523-1874635,1874709-1874772,1874841-1874934,1875009-1875117,1875251-1875352	AT5G06180.1  CDS  gene_syn MBL20.6, MBL20_6  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1022 (InterPro:IPR009367); BEST Arabidopsis thaliana protein match is: ELM1 (ELONGATED MITOCHONDRIA 1) (TAIR:AT5G22350.1); Has 1314 Blast hits to 1313 proteins in 81 species: Archae - 0; Bacteria - 151; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 1132 (source: NCBI BLink).  protein_id AT5G06180.1p  transcript_id AT5G06180.1  protein_id AT5G06180.1p  transcript_id AT5G06180.1  
At5g06180	chr5:001873197	0.0	W/1873197-1873373,1873452-1873563,1873642-1873711,1873793-1873889,1874063-1874212,1874305-1874431,1874523-1874635,1874709-1874772,1874841-1874934,1875009-1875117,1875251-1875352	AT5G06180.2  CDS  gene_syn MBL20.6, MBL20_6  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1022 (InterPro:IPR009367); BEST Arabidopsis thaliana protein match is: ELM1 (ELONGATED MITOCHONDRIA 1) (TAIR:AT5G22350.1); Has 1314 Blast hits to 1313 proteins in 81 species: Archae - 0; Bacteria - 151; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 1132 (source: NCBI BLink).  protein_id AT5G06180.2p  transcript_id AT5G06180.2  protein_id AT5G06180.2p  transcript_id AT5G06180.2  
At5g06190	chr5:001876194	0.0	C/1876194-1876394	AT5G06190.1  CDS  gene_syn MBL20.7, MBL20_7  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G06190.1p  transcript_id AT5G06190.1  protein_id AT5G06190.1p  transcript_id AT5G06190.1  
At5g06200	chr5:001877333	0.0	W/1877333-1877601,1877688-1877811,1877901-1878116	AT5G06200.1  CDS  gene_syn MBL20.8, MBL20_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane family protein  note integral membrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT3G11550.1); Has 286 Blast hits to 286 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 286; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G06200.1p  transcript_id AT5G06200.1  protein_id AT5G06200.1p  transcript_id AT5G06200.1  
At5g06210	chr5:001878497	0.0	W/1878497-1878614,1879022-1879090,1879180-1879286,1879369-1879515	AT5G06210.1  CDS  gene_syn MBL20.9, MBL20_9  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA-binding protein, putative  note RNA-binding protein, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: GR-RBP5 (glycine-rich RNA-binding protein 5); ATP binding / RNA binding (TAIR:AT1G74230.1); Has 20400 Blast hits to 15032 proteins in 629 species: Archae - 10; Bacteria - 1085; Metazoa - 11634; Fungi - 2516; Plants - 3112; Viruses - 0; Other Eukaryotes - 2043 (source: NCBI BLink).  protein_id AT5G06210.1p  transcript_id AT5G06210.1  protein_id AT5G06210.1p  transcript_id AT5G06210.1  
At5g06220	chr5:001880192	0.0	W/1880192-1880626,1880791-1880882,1881172-1881336,1881440-1881833,1882238-1882356,1882432-1882504,1882741-1882811,1882896-1882940,1883117-1883192,1883321-1883512,1883710-1883813,1883932-1883998,1884196-1884333,1884420-1884542,1884703-1884873,1885102-1885161,1885250-1885366	AT5G06220.1  CDS  gene_syn MBL20.10, MBL20_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: LETM1-like (InterPro:IPR011685); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11560.4); Has 275 Blast hits to 270 proteins in 95 species: Archae - 0; Bacteria - 6; Metazoa - 69; Fungi - 113; Plants - 51; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT5G06220.1p  transcript_id AT5G06220.1  protein_id AT5G06220.1p  transcript_id AT5G06220.1  
At5g06230	chr5:001886707	0.0	C/1886707-1886948,1886066-1886455,1885823-1885981,1885407-1885734	AT5G06230.2  CDS  gene_syn MBL20.11, MBL20_11  product unknown protein  note unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11570.1); Has 714 Blast hits to 701 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 711; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G06230.2p  transcript_id AT5G06230.2  protein_id AT5G06230.2p  transcript_id AT5G06230.2  
At5g06230	chr5:001886707	0.0	C/1886707-1887071,1886066-1886455,1885823-1885981,1885407-1885734	AT5G06230.1  CDS  gene_syn MBL20.11, MBL20_11  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11570.1); Has 714 Blast hits to 701 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 711; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G06230.1p  transcript_id AT5G06230.1  protein_id AT5G06230.1p  transcript_id AT5G06230.1  
At5g06240	chr5:001888380	0.0	W/1888380-1888517,1888950-1889103,1889316-1889512	AT5G06240.1  CDS  gene_syn MBL20.12, MBL20_12, emb2735, embryo defective 2735  gene emb2735  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product emb2735 (embryo defective 2735)  note embryo defective 2735 (emb2735); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 22 Blast hits to 21 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G06240.1p  transcript_id AT5G06240.1  protein_id AT5G06240.1p  transcript_id AT5G06240.1  
At5g06250	chr5:001893446	0.0	C/1893446-1894058,1892714-1892949	AT5G06250.2  CDS  gene_syn MHF15.23, MHF15_23  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT3G11580.1); Has 731 Blast hits to 729 proteins in 47 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 729; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G06250.2p  transcript_id AT5G06250.2  protein_id AT5G06250.2p  transcript_id AT5G06250.2  
At5g06250	chr5:001893491	0.0	C/1893491-1894058,1892714-1892949	AT5G06250.1  CDS  gene_syn MHF15.23, MHF15_23  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT3G11580.2); Has 729 Blast hits to 727 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 729; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G06250.1p  transcript_id AT5G06250.1  protein_id AT5G06250.1p  transcript_id AT5G06250.1  
At5g06260	chr5:001904783	0.0	C/1904783-1904835,1904592-1904694,1904401-1904505,1904159-1904244,1903741-1903979,1903447-1903636,1903154-1903340,1902755-1903066	AT5G06260.1  CDS  gene_syn MHF15.22, MHF15_22  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  product nucleolar protein-related  note nucleolar protein-related; FUNCTIONS IN: calcium ion binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TLDc (InterPro:IPR006571), EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: calcium ion binding (TAIR:AT4G34070.1); Has 925 Blast hits to 924 proteins in 128 species: Archae - 0; Bacteria - 0; Metazoa - 578; Fungi - 44; Plants - 76; Viruses - 0; Other Eukaryotes - 227 (source: NCBI BLink).  protein_id AT5G06260.1p  transcript_id AT5G06260.1  protein_id AT5G06260.1p  transcript_id AT5G06260.1  
At5g06265	chr5:001906596	0.0	W/1906596-1906766,1907233-1907382	AT5G06265.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hyaluronan mediated motility receptor-related  note hyaluronan mediated motility receptor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44280.1); Has 44 Blast hits to 44 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G06265.1p  transcript_id AT5G06265.1  protein_id AT5G06265.1p  transcript_id AT5G06265.1  
At5g06265	chr5:001906596	0.0	W/1906596-1906766,1907233-1907382	AT5G06265.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hyaluronan mediated motility receptor-related  note hyaluronan mediated motility receptor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44280.1); Has 44 Blast hits to 44 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G06265.2p  transcript_id AT5G06265.2  protein_id AT5G06265.2p  transcript_id AT5G06265.2  
At5g06270	chr5:001912895	0.0	W/1912895-1913263	AT5G06270.1  CDS  gene_syn MHF15.21, MHF15_21  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 108 Blast hits to 108 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G06270.1p  transcript_id AT5G06270.1  protein_id AT5G06270.1p  transcript_id AT5G06270.1  
At5g06278	chr5:001917211	0.0	W/1917211-1918112	AT5G06278.1  pseudogenic_transcript  pseudo  function pseudogene of abscisic acid-responsive HVA22 family protein  
At5g06280	chr5:001918379	0.0	C/1918379-1918849	AT5G06280.1  CDS  gene_syn MHF15.20, MHF15_20  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G06280.1p  transcript_id AT5G06280.1  protein_id AT5G06280.1p  transcript_id AT5G06280.1  
At5g06280	chr5:001918379	0.0	C/1918379-1918849	AT5G06280.3  CDS  gene_syn MHF15.20, MHF15_20  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G06280.3p  transcript_id AT5G06280.3  protein_id AT5G06280.3p  transcript_id AT5G06280.3  
At5g06290	chr5:001919380	0.0	W/1919380-1919607,1920008-1920082,1920200-1920281,1920371-1920450,1920625-1920750,1920870-1920983,1921095-1921211	AT5G06290.1  CDS  gene_syn 2-Cys Prx B, 2-Cysteine peroxiredoxin B  gene 2-Cys Prx B  function Encodes a 2-Cys peroxiredoxin (2-Cys PrxB) that contains two catalytic Cys residues.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_component stromule|GO:0010319|16923014|IDA  go_process response to cold|GO:0009409|16923014|IEP  go_function antioxidant activity|GO:0016209||ISS  go_function peroxiredoxin activity|GO:0051920|12529539|IDA  product 2-Cys Prx B (2-Cysteine peroxiredoxin B); antioxidant/ peroxiredoxin  note 2-Cysteine peroxiredoxin B (2-Cys Prx B); FUNCTIONS IN: peroxiredoxin activity, antioxidant activity; INVOLVED IN: response to cold, defense response to bacterium; LOCATED IN: apoplast, stromule, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: 2-cys peroxiredoxin, chloroplast (BAS1) (TAIR:AT3G11630.1); Has 11365 Blast hits to 11364 proteins in 1572 species: Archae - 378; Bacteria - 6205; Metazoa - 976; Fungi - 253; Plants - 295; Viruses - 0; Other Eukaryotes - 3258 (source: NCBI BLink).  protein_id AT5G06290.1p  transcript_id AT5G06290.1  protein_id AT5G06290.1p  transcript_id AT5G06290.1  
At5g06300	chr5:001925171	0.0	C/1925171-1925278,1923992-1924089,1923477-1923507,1923057-1923156,1922880-1922950,1922235-1922378,1922042-1922143	AT5G06300.1  CDS  gene_syn MHF15.18, MHF15_18  go_process metabolic process|GO:0008152||ISS  go_function carboxy-lyase activity|GO:0016831||ISS  product carboxy-lyase  note carboxy-lyase; FUNCTIONS IN: carboxy-lyase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37210.1); Has 3184 Blast hits to 3182 proteins in 788 species: Archae - 8; Bacteria - 1875; Metazoa - 10; Fungi - 79; Plants - 196; Viruses - 0; Other Eukaryotes - 1016 (source: NCBI BLink).  protein_id AT5G06300.1p  transcript_id AT5G06300.1  protein_id AT5G06300.1p  transcript_id AT5G06300.1  
At5g06310	chr5:001928468	0.0	W/1928468-1928588,1928682-1928818,1928913-1929105,1929262-1929326,1929461-1929549,1929691-1929957,1930050-1930126,1930207-1930265,1930364-1930516,1930592-1930795	AT5G06310.1  CDS  gene_syn AtPOT1b, MHF15.17, MHF15_17, protection of telomeres 1b  gene AtPOT1b  function Encodes AtPOT1b. Note on nomenclature: different names have been given to Arabidopsis POT-like genes (Kuchar and Fajkus, 2004; Shakirov et al, 2005; Tani and Murata, 2005). According to a unifying nomenclature (Surovtseva et al, 2007), At2g05210 (previously named AtPOT1) is designated AtPOT1a, while At5g06310 (previously named AtPOT2) is designated AtPOT1b.  go_component nuclear chromosome, telomeric region|GO:0000784||IEA  go_process telomere maintenance|GO:0000723||IEA  go_function DNA binding|GO:0003677||IEA  product AtPOT1b (protection of telomeres 1b); DNA binding  note protection of telomeres 1b (AtPOT1b); FUNCTIONS IN: DNA binding; INVOLVED IN: telomere maintenance; LOCATED IN: nuclear chromosome, telomeric region; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Telomere end binding protein (InterPro:IPR011564); BEST Arabidopsis thaliana protein match is: AtPOT1a (Protection of Telomeres 1a); telomeric DNA binding (TAIR:AT2G05210.3); Has 161 Blast hits to 160 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 72; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT5G06310.1p  transcript_id AT5G06310.1  protein_id AT5G06310.1p  transcript_id AT5G06310.1  
At5g06320	chr5:001931016	0.0	C/1931016-1931711	AT5G06320.1  CDS  gene_syn MHF15.16, MHF15_16, NHL3  gene NHL3  function encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and Pseudomonas syringae pv. tomato DC3000. The gene product is localized to the plasma membrane.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component plasma membrane|GO:0005886|12913158|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_process response to bacterium|GO:0009617|12059109|IEP  go_process defense response to bacterium|GO:0042742|12913158|IMP  go_process defense response to virus|GO:0051607|14666423|IEP  go_function molecular_function|GO:0003674||ND  product NHL3  note NHL3; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to virus, defense response to bacterium, response to bacterium; LOCATED IN: plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: NHL2 (TAIR:AT3G11650.1); Has 675 Blast hits to 675 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 675; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G06320.1p  transcript_id AT5G06320.1  protein_id AT5G06320.1p  transcript_id AT5G06320.1  
At5g06330	chr5:001934961	0.0	C/1934961-1935584	AT5G06330.1  CDS  gene_syn MHF15.15, MHF15_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hairpin-responsive protein, putative (HIN1)  note hairpin-responsive protein, putative (HIN1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: NHL1 (TAIR:AT3G11660.1); Has 601 Blast hits to 601 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 601; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G06330.1p  transcript_id AT5G06330.1  protein_id AT5G06330.1p  transcript_id AT5G06330.1  
At5g06340	chr5:001936467	0.0	W/1936467-1936694,1936793-1936843,1937176-1937268,1937409-1937503,1937603-1937717,1937810-1937911	AT5G06340.1  CDS  gene_syn ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 27, ATNUDX27, MHF15.14, MHF15_14  gene ATNUDX27  go_component chloroplast|GO:0009507|18815383|IDA  go_process biological_process|GO:0008150||ND  go_function bis(5 -nucleosyl)-tetraphosphatase (asymmetrical) activity|GO:0004081||ISS  go_function bis(5 -adenosyl)-pentaphosphatase activity|GO:0034432|18815383|IDA  product ATNUDX27 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 27); bis(5 -adenosyl)-pentaphosphatase/ bis(5 -nucleosyl)-tetraphosphatase (asymmetrical)  note ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 27 (ATNUDX27); FUNCTIONS IN: bis(5 -adenosyl)-pentaphosphatase activity, bis(5 -nucleosyl)-tetraphosphatase (asymmetrical) activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), NUDIX hydrolase, core (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: ATNUDX26 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 26); bis(5 -adenosyl)-pentaphosphatase/ bis(5 -nucleosyl)-tetraphosphatase (asymmetrical) (TAIR:AT3G10620.1); Has 3191 Blast hits to 3191 proteins in 724 species: Archae - 2; Bacteria - 1483; Metazoa - 9; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 1660 (source: NCBI BLink).  protein_id AT5G06340.1p  transcript_id AT5G06340.1  protein_id AT5G06340.1p  transcript_id AT5G06340.1  
At5g06350	chr5:001938781	0.0	W/1938781-1938837,1938923-1938995,1939075-1939197,1939282-1939451,1939705-1939854,1939983-1940126,1940492-1940552,1940890-1941242,1941454-1941585,1941756-1941875,1942013-1942099,1942208-1942330,1942479-1942584,1942685-1942816,1942927-1943061,1943220-1943371,1943473-1943613,1943703-1944020,1944102-1944197	AT5G06350.1  CDS  gene_syn MHF15.13, MHF15_13  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT5G27010.1); Has 221 Blast hits to 213 proteins in 103 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 83; Plants - 22; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT5G06350.1p  transcript_id AT5G06350.1  protein_id AT5G06350.1p  transcript_id AT5G06350.1  
At5g06360	chr5:001944835	0.0	W/1944835-1944837,1944964-1945083,1945166-1945233,1945376-1945484,1945577-1945645,1945736-1945793,1945994-1946229,1946312-1946363,1946445-1946512	AT5G06360.1  CDS  gene_syn MHF15.12, MHF15_12  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein S8e family protein  note ribosomal protein S8e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8e (InterPro:IPR001047); Has 361 Blast hits to 360 proteins in 172 species: Archae - 6; Bacteria - 2; Metazoa - 152; Fungi - 111; Plants - 23; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT5G06360.1p  transcript_id AT5G06360.1  protein_id AT5G06360.1p  transcript_id AT5G06360.1  
At5g06370	chr5:001948413	0.0	C/1948413-1948432,1948249-1948322,1947299-1947984	AT5G06370.1  CDS  gene_syn MHF15.11, MHF15_11  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NC domain-containing protein  note NC domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NC (InterPro:IPR007053); BEST Arabidopsis thaliana protein match is: NC domain-containing protein (TAIR:AT3G02700.1); Has 102 Blast hits to 101 proteins in 29 species: Archae - 0; Bacteria - 28; Metazoa - 4; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G06370.1p  transcript_id AT5G06370.1  protein_id AT5G06370.1p  transcript_id AT5G06370.1  
At5g06380	chr5:001949632	0.0	W/1949632-1950072	AT5G06380.1  CDS  gene_syn MHF15.10, MHF15_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11690.1); Has 39 Blast hits to 39 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G06380.1p  transcript_id AT5G06380.1  protein_id AT5G06380.1p  transcript_id AT5G06380.1  
At5g06390	chr5:001952939	0.0	W/1952939-1954241,1954974-1955047	AT5G06390.1  CDS  gene_syn FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17 PRECURSOR, FLA17, MHF15.9, MHF15_9  gene FLA17  go_component vacuole|GO:0005773|15539469|IDA  go_process cell adhesion|GO:0007155||ISS  go_function molecular_function|GO:0003674||ND  product FLA17 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17 PRECURSOR)  note FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17 PRECURSOR (FLA17); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell adhesion; LOCATED IN: vacuole; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FLA18 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 18 PRECURSOR) (TAIR:AT3G11700.1); Has 604 Blast hits to 583 proteins in 167 species: Archae - 4; Bacteria - 312; Metazoa - 34; Fungi - 16; Plants - 127; Viruses - 1; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT5G06390.1p  transcript_id AT5G06390.1  protein_id AT5G06390.1p  transcript_id AT5G06390.1  
At5g06400	chr5:001955959	0.0	W/1955959-1959051	AT5G06400.1  CDS  gene_syn MHF15.8, MHF15_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, seed; EXPRESSED DURING: D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G62910.1); Has 24941 Blast hits to 5285 proteins in 164 species: Archae - 2; Bacteria - 0; Metazoa - 339; Fungi - 318; Plants - 23446; Viruses - 0; Other Eukaryotes - 836 (source: NCBI BLink).  protein_id AT5G06400.1p  transcript_id AT5G06400.1  protein_id AT5G06400.1p  transcript_id AT5G06400.1  
At5g06410	chr5:001960834	0.0	C/1960834-1961132,1960553-1960649,1960367-1960456,1960218-1960283,1960005-1960073,1959719-1959856	AT5G06410.1  CDS  gene_syn MHF15.7, MHF15_7  go_process protein folding|GO:0006457||IEA  go_function protein binding|GO:0005515||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function chaperone binding|GO:0051087||IEA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: protein binding, heat shock protein binding, chaperone binding; INVOLVED IN: protein folding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock cognate protein B, C-terminal oligomerisation (InterPro:IPR009073), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Co-chaperone Hsc20 (InterPro:IPR004640); Has 1232 Blast hits to 1232 proteins in 576 species: Archae - 0; Bacteria - 899; Metazoa - 98; Fungi - 66; Plants - 20; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT5G06410.1p  transcript_id AT5G06410.1  protein_id AT5G06410.1p  transcript_id AT5G06410.1  
At5g06420	chr5:001961521	0.0	W/1961521-1961719,1961841-1962655,1962748-1962870	AT5G06420.1  CDS  gene_syn MHF15.6, MHF15_6  go_component membrane|GO:0016020|17432890|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function nucleic acid binding|GO:0003676||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (CCCH-type/C3HC4-type RING finger) family protein  note zinc finger (CCCH-type/C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding, nucleic acid binding; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, pollen tube, leaf; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: nucleic acid binding / protein binding / zinc ion binding (TAIR:AT1G01350.1); Has 663 Blast hits to 660 proteins in 162 species: Archae - 0; Bacteria - 1; Metazoa - 283; Fungi - 146; Plants - 89; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).  protein_id AT5G06420.1p  transcript_id AT5G06420.1  protein_id AT5G06420.1p  transcript_id AT5G06420.1  
At5g06420	chr5:001961521	0.0	W/1961521-1961719,1961841-1962655,1962748-1962870	AT5G06420.2  CDS  gene_syn MHF15.6, MHF15_6  go_component membrane|GO:0016020|17432890|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function nucleic acid binding|GO:0003676||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (CCCH-type/C3HC4-type RING finger) family protein  note zinc finger (CCCH-type/C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding, nucleic acid binding; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, pollen tube, leaf; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: nucleic acid binding / protein binding / zinc ion binding (TAIR:AT1G01350.1); Has 663 Blast hits to 660 proteins in 162 species: Archae - 0; Bacteria - 1; Metazoa - 283; Fungi - 146; Plants - 89; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).  protein_id AT5G06420.2p  transcript_id AT5G06420.2  protein_id AT5G06420.2p  transcript_id AT5G06420.2  
At5g06430	chr5:001963820	0.0	C/1963820-1964251,1963580-1963732	AT5G06430.1  CDS  gene_syn MHF15.5, MHF15_5  product thioredoxin-related  note thioredoxin-related; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: HCF164; oxidoreductase, acting on sulfur group of donors, disulfide as acceptor (TAIR:AT4G37200.1); Has 165 Blast hits to 164 proteins in 55 species: Archae - 0; Bacteria - 86; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT5G06430.1p  transcript_id AT5G06430.1  protein_id AT5G06430.1p  transcript_id AT5G06430.1  
At5g06440	chr5:001966475	0.0	C/1966475-1966475,1966256-1966378,1966119-1966158,1965952-1966041,1965757-1965856,1965544-1965674,1965359-1965461,1964641-1965270	AT5G06440.1  CDS  gene_syn MHF15.4, MHF15_4  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11720.3); Has 75 Blast hits to 73 proteins in 27 species: Archae - 0; Bacteria - 4; Metazoa - 6; Fungi - 7; Plants - 32; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT5G06440.1p  transcript_id AT5G06440.1  protein_id AT5G06440.1p  transcript_id AT5G06440.1  
At5g06440	chr5:001966693	0.0	C/1966693-1966807,1966475-1966596,1966256-1966364,1966119-1966158,1965952-1966041,1965757-1965856,1965544-1965674,1965359-1965461,1964641-1965270	AT5G06440.2  CDS  gene_syn MHF15.4, MHF15_4  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11720.3); Has 76 Blast hits to 74 proteins in 28 species: Archae - 0; Bacteria - 4; Metazoa - 6; Fungi - 7; Plants - 32; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT5G06440.2p  transcript_id AT5G06440.2  protein_id AT5G06440.2p  transcript_id AT5G06440.2  
At5g06440	chr5:001966693	0.0	C/1966693-1966807,1966475-1966596,1966256-1966364,1966119-1966158,1965952-1966041,1965757-1965856,1965544-1965674,1965359-1965461,1964641-1965270	AT5G06440.3  CDS  gene_syn MHF15.4, MHF15_4  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11720.3); Has 76 Blast hits to 74 proteins in 28 species: Archae - 0; Bacteria - 4; Metazoa - 6; Fungi - 7; Plants - 32; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT5G06440.3p  transcript_id AT5G06440.3  protein_id AT5G06440.3p  transcript_id AT5G06440.3  
At5g06450	chr5:001967869	0.0	C/1967869-1968489	AT5G06450.1  CDS  gene_syn MHF15.3, MHF15_3  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT3G11770.1); Has 41 Blast hits to 41 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G06450.1p  transcript_id AT5G06450.1  protein_id AT5G06450.1p  transcript_id AT5G06450.1  
At5g06460	chr5:001970239	0.0	W/1970239-1970560,1970902-1971119,1971313-1972107,1972317-1973185,1973267-1973699,1973786-1974382	AT5G06460.1  CDS  gene_syn ATUBA2, MHF15.2, MHF15_2  gene ATUBA2  function Encodes a ubiquitin-activating enzyme (E1), involved in the first step in conjugating multiple ubiquitins to proteins targeted for degradation. Gene is expressed in most tissues examined.  go_component nucleus|GO:0005634|9076989|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process protein ubiquitination|GO:0016567|9076989|IDA  go_function ubiquitin activating enzyme activity|GO:0004839|9076989|IMP  go_function ubiquitin activating enzyme activity|GO:0004839||ISS  go_function ubiquitin-protein ligase activity|GO:0004842|9076989|IDA  product ATUBA2; ubiquitin activating enzyme/ ubiquitin-protein ligase  note ATUBA2; FUNCTIONS IN: ubiquitin-protein ligase activity, ubiquitin activating enzyme activity; INVOLVED IN: ubiquitin-dependent protein catabolic process, protein ubiquitination; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-activating enzyme repeat (InterPro:IPR000127), Ubiquitin-activating enzyme, E1, active site (InterPro:IPR018074), UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594), Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), Ubiquitin-activating enzyme, E1 (InterPro:IPR018075), NAD(P)-binding (InterPro:IPR016040), Ubiquitin-activating enzyme, E1-like (InterPro:IPR000011); BEST Arabidopsis thaliana protein match is: ATUBA1; ubiquitin activating enzyme/ ubiquitin-protein ligase (TAIR:AT2G30110.1); Has 12625 Blast hits to 7983 proteins in 1305 species: Archae - 249; Bacteria - 5773; Metazoa - 1663; Fungi - 924; Plants - 420; Viruses - 0; Other Eukaryotes - 3596 (source: NCBI BLink).  protein_id AT5G06460.1p  transcript_id AT5G06460.1  protein_id AT5G06460.1p  transcript_id AT5G06460.1  
At5g06470	chr5:001974659	0.0	C/1974659-1975378	AT5G06470.1  CDS  gene_syn MHF15.1, MHF15_1  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  product glutaredoxin family protein  note glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: electron carrier/ protein disulfide oxidoreductase (TAIR:AT3G11773.1); Has 1799 Blast hits to 1799 proteins in 402 species: Archae - 0; Bacteria - 685; Metazoa - 107; Fungi - 0; Plants - 231; Viruses - 0; Other Eukaryotes - 776 (source: NCBI BLink).  protein_id AT5G06470.1p  transcript_id AT5G06470.1  protein_id AT5G06470.1p  transcript_id AT5G06470.1  
At5g06480	chr5:001977141	0.0	C/1977141-1977231,1976865-1976966,1976523-1976683,1976219-1976326	AT5G06480.1  CDS  gene_syn F15M7.1, F15M7_1  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MD-2-related lipid recognition domain-containing protein / ML domain-containing protein  note MD-2-related lipid recognition domain-containing protein / ML domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), MD-2-related lipid-recognition (InterPro:IPR003172); BEST Arabidopsis thaliana protein match is: MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (TAIR:AT3G11780.1); Has 144 Blast hits to 144 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 77; Plants - 53; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT5G06480.1p  transcript_id AT5G06480.1  protein_id AT5G06480.1p  transcript_id AT5G06480.1  
At5g06490	chr5:001977996	0.0	C/1977996-1978589	AT5G06490.1  CDS  gene_syn F15M7.2, F15M7_2  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G35910.1); Has 5813 Blast hits to 5798 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 1922; Fungi - 433; Plants - 2558; Viruses - 21; Other Eukaryotes - 879 (source: NCBI BLink).  protein_id AT5G06490.1p  transcript_id AT5G06490.1  protein_id AT5G06490.1p  transcript_id AT5G06490.1  
At5g06500	chr5:001982444	0.0	W/1982444-1983172	AT5G06500.1  CDS  gene_syn AGAMOUS-LIKE 96, AGL96, F15M7.3, F15M7_3  gene AGL96  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product AGL96 (AGAMOUS-LIKE 96); DNA binding / transcription factor  note AGAMOUS-LIKE 96 (AGL96); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL48 (AGAMOUS-LIKE 48); transcription factor (TAIR:AT2G40210.1); Has 1492 Blast hits to 1491 proteins in 262 species: Archae - 0; Bacteria - 0; Metazoa - 415; Fungi - 55; Plants - 992; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT5G06500.1p  transcript_id AT5G06500.1  protein_id AT5G06500.1p  transcript_id AT5G06500.1  
At5g06510	chr5:001985439	0.0	W/1985439-1985631,1985804-1985895,1985991-1986197,1986274-1986591	AT5G06510.1  CDS  gene_syn F15M7.4, F15M7_4, NF-YA10, NUCLEAR FACTOR Y, SUBUNIT A10  gene NF-YA10  go_component nucleus|GO:0005634||IEA  go_component CCAAT-binding factor complex|GO:0016602||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component CCAAT-binding factor complex|GO:0016602||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product NF-YA10 (NUCLEAR FACTOR Y, SUBUNIT A10); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT A10 (NF-YA10); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus; EXPRESSED IN: stem, leaf whorl, embryo, vascular tissue, seed; EXPRESSED DURING: F mature embryo stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: NF-YA2 (NUCLEAR FACTOR Y, SUBUNIT A2); transcription factor (TAIR:AT3G05690.1); Has 436 Blast hits to 436 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 88; Plants - 216; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G06510.1p  transcript_id AT5G06510.1  protein_id AT5G06510.1p  transcript_id AT5G06510.1  
At5g06510	chr5:001985439	0.0	W/1985439-1985631,1985804-1985895,1985991-1986197,1986274-1986591	AT5G06510.2  CDS  gene_syn F15M7.4, F15M7_4, NF-YA10, NUCLEAR FACTOR Y, SUBUNIT A10  gene NF-YA10  go_component nucleus|GO:0005634||IEA  go_component CCAAT-binding factor complex|GO:0016602||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component CCAAT-binding factor complex|GO:0016602||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product NF-YA10 (NUCLEAR FACTOR Y, SUBUNIT A10); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT A10 (NF-YA10); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus; EXPRESSED IN: stem, leaf whorl, embryo, vascular tissue, seed; EXPRESSED DURING: F mature embryo stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: NF-YA2 (NUCLEAR FACTOR Y, SUBUNIT A2); transcription factor (TAIR:AT3G05690.1); Has 436 Blast hits to 436 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 88; Plants - 216; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G06510.2p  transcript_id AT5G06510.2  protein_id AT5G06510.2p  transcript_id AT5G06510.2  
At5g06510	chr5:001985758	0.0	W/1985758-1985895,1985991-1986197,1986274-1986591	AT5G06510.3  CDS  gene_syn F15M7.4, F15M7_4, NF-YA10, NUCLEAR FACTOR Y, SUBUNIT A10  gene NF-YA10  go_component nucleus|GO:0005634||IEA  go_component CCAAT-binding factor complex|GO:0016602||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component CCAAT-binding factor complex|GO:0016602||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product NF-YA10 (NUCLEAR FACTOR Y, SUBUNIT A10); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT A10 (NF-YA10); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus; EXPRESSED IN: stem, leaf whorl, embryo, vascular tissue, seed; EXPRESSED DURING: F mature embryo stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: NF-YA2 (NUCLEAR FACTOR Y, SUBUNIT A2); transcription factor (TAIR:AT3G05690.1); Has 436 Blast hits to 436 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 88; Plants - 216; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G06510.3p  transcript_id AT5G06510.3  protein_id AT5G06510.3p  transcript_id AT5G06510.3  
At5g06520	chr5:001987456	0.0	C/1987456-1989372,1987250-1987372	AT5G06520.1  CDS  gene_syn F15M7.5, F15M7_5  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process RNA processing|GO:0006396||ISS  go_function RNA binding|GO:0003723||ISS  product SWAP (Suppressor-of-White-APricot)/surp domain-containing protein  note SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: sepal; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061); BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (TAIR:AT1G14650.2); Has 825 Blast hits to 350 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 377; Fungi - 177; Plants - 161; Viruses - 2; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT5G06520.1p  transcript_id AT5G06520.1  protein_id AT5G06520.1p  transcript_id AT5G06520.1  
At5g06530	chr5:001994203	0.0	C/1994203-1994605,1992851-1992921,1992207-1992442,1991964-1992119,1991702-1991885,1991315-1991623,1990936-1991223,1990561-1990845,1990334-1990477	AT5G06530.3  CDS  gene_syn F15M7.6, F15M7_6  go_component plasma membrane|GO:0005886|17317660|IDA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ABC transporter family protein  note ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT3G52310.1); Has 238449 Blast hits to 217130 proteins in 2657 species: Archae - 4313; Bacteria - 162808; Metazoa - 8083; Fungi - 4428; Plants - 2750; Viruses - 7; Other Eukaryotes - 56060 (source: NCBI BLink).  protein_id AT5G06530.3p  transcript_id AT5G06530.3  protein_id AT5G06530.3p  transcript_id AT5G06530.3  
At5g06530	chr5:001994203	0.0	C/1994203-1994605,1992851-1992921,1992207-1992442,1991964-1992119,1991702-1991885,1991315-1991623,1990936-1991223,1990561-1990845,1990370-1990477,1990060-1990275	AT5G06530.1  CDS  gene_syn F15M7.6, F15M7_6  go_component plasma membrane|GO:0005886|17317660|IDA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ABC transporter family protein  note ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT3G52310.1); Has 238538 Blast hits to 217186 proteins in 2658 species: Archae - 4316; Bacteria - 162845; Metazoa - 8090; Fungi - 4440; Plants - 2766; Viruses - 7; Other Eukaryotes - 56074 (source: NCBI BLink).  protein_id AT5G06530.1p  transcript_id AT5G06530.1  protein_id AT5G06530.1p  transcript_id AT5G06530.1  
At5g06530	chr5:001994203	0.0	C/1994203-1994605,1992851-1992921,1992207-1992442,1991964-1992119,1991702-1991885,1991315-1991623,1990936-1991223,1990561-1990845,1990370-1990477,1990060-1990275	AT5G06530.2  CDS  gene_syn F15M7.6, F15M7_6  go_component plasma membrane|GO:0005886|17317660|IDA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ABC transporter family protein  note ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT3G52310.1); Has 238538 Blast hits to 217186 proteins in 2658 species: Archae - 4316; Bacteria - 162845; Metazoa - 8090; Fungi - 4440; Plants - 2766; Viruses - 7; Other Eukaryotes - 56074 (source: NCBI BLink).  protein_id AT5G06530.2p  transcript_id AT5G06530.2  protein_id AT5G06530.2p  transcript_id AT5G06530.2  
At5g06540	chr5:001999181	0.0	C/1999181-2001049	AT5G06540.1  CDS  gene_syn F15M7.7, F15M7_7  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G66520.1); Has 13045 Blast hits to 5132 proteins in 158 species: Archae - 0; Bacteria - 2; Metazoa - 49; Fungi - 32; Plants - 12688; Viruses - 0; Other Eukaryotes - 274 (source: NCBI BLink).  protein_id AT5G06540.1p  transcript_id AT5G06540.1  protein_id AT5G06540.1p  transcript_id AT5G06540.1  
At5g06550	chr5:002001795	0.0	C/2001795-2003068,2001246-2001480	AT5G06550.1  CDS  gene_syn F15M7.8, F15M7_8  go_process cell surface receptor linked signal transduction|GO:0007166||ISS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell surface receptor linked signal transduction; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: transferase, transferring glycosyl groups (TAIR:AT1G78280.1); Has 1299 Blast hits to 1289 proteins in 204 species: Archae - 0; Bacteria - 195; Metazoa - 777; Fungi - 106; Plants - 94; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).  protein_id AT5G06550.1p  transcript_id AT5G06550.1  protein_id AT5G06550.1p  transcript_id AT5G06550.1  
At5g06560	chr5:002004137	0.0	C/2004137-2005543,2003953-2003999,2003678-2003780	AT5G06560.1  CDS  gene_syn F15M7.9, F15M7_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11850.2); Has 800 Blast hits to 744 proteins in 109 species: Archae - 8; Bacteria - 38; Metazoa - 326; Fungi - 28; Plants - 211; Viruses - 24; Other Eukaryotes - 165 (source: NCBI BLink).  protein_id AT5G06560.1p  transcript_id AT5G06560.1  protein_id AT5G06560.1p  transcript_id AT5G06560.1  
At5g06570	chr5:002010331	0.0	C/2010331-2011013,2008075-2008381	AT5G06570.1  CDS  gene_syn F15M7.10, F15M7_10  go_process metabolic process|GO:0008152||IEA  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  product hydrolase  note hydrolase; FUNCTIONS IN: hydrolase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: AtCXE17 (Arabidopsis thaliana carboxyesterase 17); hydrolase (TAIR:AT5G16080.1); Has 6488 Blast hits to 6477 proteins in 918 species: Archae - 49; Bacteria - 3313; Metazoa - 668; Fungi - 664; Plants - 658; Viruses - 3; Other Eukaryotes - 1133 (source: NCBI BLink).  protein_id AT5G06570.1p  transcript_id AT5G06570.1  protein_id AT5G06570.1p  transcript_id AT5G06570.1  
At5g06570	chr5:002010331	0.0	C/2010331-2011013,2008075-2008381	AT5G06570.2  CDS  gene_syn F15M7.10, F15M7_10  go_process metabolic process|GO:0008152||IEA  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  product hydrolase  note hydrolase; FUNCTIONS IN: hydrolase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: AtCXE17 (Arabidopsis thaliana carboxyesterase 17); hydrolase (TAIR:AT5G16080.1); Has 6488 Blast hits to 6477 proteins in 918 species: Archae - 49; Bacteria - 3313; Metazoa - 668; Fungi - 664; Plants - 658; Viruses - 3; Other Eukaryotes - 1133 (source: NCBI BLink).  protein_id AT5G06570.2p  transcript_id AT5G06570.2  protein_id AT5G06570.2p  transcript_id AT5G06570.2  
At5g06580	chr5:002016220	0.0	C/2016220-2016473,2016034-2016136,2015840-2015940,2015621-2015669,2015410-2015502,2014951-2015065,2014639-2014699,2014507-2014543,2014374-2014435,2014118-2014214,2013545-2013619,2013359-2013467,2012997-2013106,2012595-2012657,2012355-2012434,2012135-2012265,2011699-2011742,2011486-2011605	AT5G06580.1  CDS  gene_syn F15M7.11, F15M7_11  function Encodes a protein with glycolate dehydrogenase activity, which was shown to complement various subunits of the E. coli glycolate oxidase complex. It has not been ruled out that the enzyme might be involved in other catalytic activities in vivo.  go_component mitochondrion|GO:0005739|17137349|IDA  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|14966218|IDA  go_function glycolate oxidase activity|GO:0008891|14966218|IGI  go_function glycolate dehydrogenase activity|GO:0019154|14966218|IDA  product FAD linked oxidase family protein  note FAD linked oxidase family protein; FUNCTIONS IN: glycolate oxidase activity, glycolate dehydrogenase activity, ATP binding; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD-linked oxidase, FAD-binding, subdomain 2 (InterPro:IPR016168), FAD-binding, type 2 (InterPro:IPR016166), FAD-linked oxidase, C-terminal (InterPro:IPR004113), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094), FAD-binding, type 2, subdomain 1 (InterPro:IPR016167); BEST Arabidopsis thaliana protein match is: FAD linked oxidase family protein (TAIR:AT4G36400.2); Has 13601 Blast hits to 13288 proteins in 1185 species: Archae - 158; Bacteria - 6903; Metazoa - 303; Fungi - 838; Plants - 186; Viruses - 0; Other Eukaryotes - 5213 (source: NCBI BLink).  protein_id AT5G06580.1p  transcript_id AT5G06580.1  protein_id AT5G06580.1p  transcript_id AT5G06580.1  
At5g06590	chr5:002016713	0.0	W/2016713-2016824,2016910-2017110,2017195-2017333,2017517-2017587,2017711-2017759,2017842-2017900,2017990-2018102,2018442-2018547,2018650-2018744	AT5G06590.1  CDS  gene_syn F15M7.12, F15M7_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 13 Blast hits to 13 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G06590.1p  transcript_id AT5G06590.1  protein_id AT5G06590.1p  transcript_id AT5G06590.1  
At5g06600	chr5:002027805	0.0	C/2027805-2027834,2027436-2027502,2027079-2027229,2026819-2026976,2026232-2026497,2025916-2026134,2025720-2025828,2025463-2025578,2025079-2025177,2024872-2024981,2024515-2024589,2024227-2024305,2023991-2024140,2023833-2023913,2023610-2023729,2023303-2023425,2022883-2022957,2022673-2022761,2022355-2022463,2022197-2022265,2022015-2022122,2021655-2021710,2021410-2021587,2021217-2021318,2021060-2021131,2020910-2020975,2020694-2020759,2020241-2020324,2020018-2020134,2019860-2019934,2019681-2019767,2019545-2019586	AT5G06600.2  CDS  gene_syn F15M7.13, F15M7_13, UBIQUITIN-SPECIFIC PROTEASE 12, UBP12  gene UBP12  function Encodes a ubiquitin-specific protease.  go_process DNA topological change|GO:0006265||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function double-stranded DNA binding|GO:0003690||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_component cellular_component|GO:0005575||ND  go_function ubiquitin-specific protease activity|GO:0004843||ISS  product UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12); double-stranded DNA binding / ubiquitin thiolesterase/ ubiquitin-specific protease  note UBIQUITIN-SPECIFIC PROTEASE 12 (UBP12); FUNCTIONS IN: ubiquitin-specific protease activity, double-stranded DNA binding, ubiquitin thiolesterase activity; INVOLVED IN: DNA topological change, ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Small acid-soluble spore protein, alpha/beta-type, conserved site (InterPro:IPR018126), TRAF-like (InterPro:IPR008974), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), MATH (InterPro:IPR002083), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13); ubiquitin thiolesterase/ ubiquitin-specific protease (TAIR:AT3G11910.1); Has 6057 Blast hits to 5468 proteins in 195 species: Archae - 0; Bacteria - 4; Metazoa - 3223; Fungi - 775; Plants - 854; Viruses - 9; Other Eukaryotes - 1192 (source: NCBI BLink).  protein_id AT5G06600.2p  transcript_id AT5G06600.2  protein_id AT5G06600.2p  transcript_id AT5G06600.2  
At5g06600	chr5:002027805	0.0	C/2027805-2027834,2027436-2027505,2027079-2027229,2026819-2026976,2026232-2026497,2025916-2026134,2025720-2025828,2025463-2025578,2025079-2025177,2024872-2024981,2024515-2024589,2024227-2024305,2023991-2024140,2023833-2023913,2023610-2023729,2023303-2023425,2022883-2022957,2022673-2022761,2022355-2022463,2022197-2022265,2022015-2022122,2021655-2021710,2021410-2021587,2021217-2021318,2021060-2021131,2020910-2020975,2020682-2020759	AT5G06600.3  CDS  gene_syn F15M7.13, F15M7_13, UBIQUITIN-SPECIFIC PROTEASE 12, UBP12  gene UBP12  function Encodes a ubiquitin-specific protease.  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_component cellular_component|GO:0005575||ND  go_function ubiquitin-specific protease activity|GO:0004843||ISS  product UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12); ubiquitin thiolesterase/ ubiquitin-specific protease  note UBIQUITIN-SPECIFIC PROTEASE 12 (UBP12); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), MATH (InterPro:IPR002083), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13); ubiquitin thiolesterase/ ubiquitin-specific protease (TAIR:AT3G11910.1); Has 5902 Blast hits to 5320 proteins in 195 species: Archae - 0; Bacteria - 4; Metazoa - 3166; Fungi - 727; Plants - 844; Viruses - 9; Other Eukaryotes - 1152 (source: NCBI BLink).  protein_id AT5G06600.3p  transcript_id AT5G06600.3  protein_id AT5G06600.3p  transcript_id AT5G06600.3  
At5g06600	chr5:002027805	0.0	C/2027805-2027834,2027436-2027505,2027079-2027229,2026819-2026976,2026232-2026497,2025916-2026134,2025720-2025828,2025463-2025578,2025079-2025177,2024872-2024981,2024515-2024589,2024227-2024305,2023991-2024140,2023833-2023913,2023610-2023729,2023303-2023425,2022883-2022957,2022673-2022761,2022355-2022463,2022197-2022265,2022015-2022122,2021655-2021710,2021410-2021587,2021217-2021318,2021060-2021131,2020910-2020975,2020694-2020759,2020241-2020324,2020018-2020134,2019860-2019934,2019681-2019767,2019545-2019586	AT5G06600.1  CDS  gene_syn F15M7.13, F15M7_13, UBIQUITIN-SPECIFIC PROTEASE 12, UBP12  gene UBP12  function Encodes a ubiquitin-specific protease.  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_component cellular_component|GO:0005575||ND  go_function ubiquitin-specific protease activity|GO:0004843||ISS  product UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12); ubiquitin thiolesterase/ ubiquitin-specific protease  note UBIQUITIN-SPECIFIC PROTEASE 12 (UBP12); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), MATH (InterPro:IPR002083), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13); ubiquitin thiolesterase/ ubiquitin-specific protease (TAIR:AT3G11910.1); Has 6058 Blast hits to 5469 proteins in 195 species: Archae - 0; Bacteria - 4; Metazoa - 3224; Fungi - 775; Plants - 854; Viruses - 9; Other Eukaryotes - 1192 (source: NCBI BLink).  protein_id AT5G06600.1p  transcript_id AT5G06600.1  protein_id AT5G06600.1p  transcript_id AT5G06600.1  
At5g06610	chr5:002029953	0.0	W/2029953-2030180,2031427-2031768,2032956-2033179,2033308-2033620	AT5G06610.1  CDS  gene_syn F15M7.14, F15M7_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF620 (InterPro:IPR006873); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27690.1); Has 110 Blast hits to 108 proteins in 13 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G06610.1p  transcript_id AT5G06610.1  protein_id AT5G06610.1p  transcript_id AT5G06610.1  
At5g06620	chr5:002033780	0.0	W/2033780-2034130,2034329-2034384,2034708-2034834,2035078-2035147,2035245-2035427,2035853-2035924,2036025-2036143	AT5G06620.1  CDS  gene_syn ATXR4, F15M7.15, F15M7_15, SDG38, SET DOMAIN PROTEIN 38  gene SDG38  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SDG38 (SET DOMAIN PROTEIN 38)  note SET DOMAIN PROTEIN 38 (SDG38); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: ASHR2 (ASH1-RELATED PROTEIN 2) (TAIR:AT2G19640.2); Has 977 Blast hits to 970 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 431; Fungi - 184; Plants - 155; Viruses - 3; Other Eukaryotes - 204 (source: NCBI BLink).  protein_id AT5G06620.1p  transcript_id AT5G06620.1  protein_id AT5G06620.1p  transcript_id AT5G06620.1  
At5g06630	chr5:002036502	0.0	C/2036502-2037824	AT5G06630.1  CDS  gene_syn F15M7.16, F15M7_16  go_component endomembrane system|GO:0012505||IEA  go_process plant-type cell wall organization|GO:0009664||IEA  go_function structural constituent of cell wall|GO:0005199||IEA  product proline-rich extensin-like family protein  note proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, male gametophyte, hypocotyl, root, leaf; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Extensin-like region (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: proline-rich extensin-like family protein (TAIR:AT5G06640.1); Has 141010 Blast hits to 26688 proteins in 1119 species: Archae - 294; Bacteria - 16718; Metazoa - 56902; Fungi - 21683; Plants - 21330; Viruses - 3690; Other Eukaryotes - 20393 (source: NCBI BLink).  protein_id AT5G06630.1p  transcript_id AT5G06630.1  protein_id AT5G06630.1p  transcript_id AT5G06630.1  
At5g06634	chr5:002038817	0.0	W/2038817-2039221	AT5G06634.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G06650; GIS2 (GLABROUS INFLORESCENCE STEMS 2); nucleic acid binding / transcription factor/ zinc ion binding  
At5g06640	chr5:002039859	0.0	C/2039859-2041928	AT5G06640.1  CDS  gene_syn F15M7.17, F15M7_17  go_process plant-type cell wall organization|GO:0009664||IEA  go_function structural constituent of cell wall|GO:0005199||IEA  product proline-rich extensin-like family protein  note proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; EXPRESSED IN: shoot apex, sepal, hypocotyl, root, leaf; EXPRESSED DURING: 4 anthesis, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Extensin-like region (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: proline-rich extensin-like family protein (TAIR:AT4G08410.1); Has 229721 Blast hits to 34751 proteins in 1277 species: Archae - 499; Bacteria - 28969; Metazoa - 93888; Fungi - 35517; Plants - 33451; Viruses - 6542; Other Eukaryotes - 30855 (source: NCBI BLink).  protein_id AT5G06640.1p  transcript_id AT5G06640.1  protein_id AT5G06640.1p  transcript_id AT5G06640.1  
At5g06650	chr5:002043486	0.0	W/2043486-2044061	AT5G06650.1  CDS  gene_syn F15M7.18, F15M7_18, GIS2, GLABROUS INFLORESCENCE STEMS 2  gene GIS2  go_component intracellular|GO:0005622||IEA  go_process response to cytokinin stimulus|GO:0009735||IMP  go_process response to gibberellin stimulus|GO:0009739||IMP  go_process trichome differentiation|GO:0010026|17507408|IMP  go_process trichome differentiation|GO:0010026||IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||IDA  go_function zinc ion binding|GO:0008270||ISS  product GIS2 (GLABROUS INFLORESCENCE STEMS 2); nucleic acid binding / transcription factor/ zinc ion binding  note GLABROUS INFLORESCENCE STEMS 2 (GIS2); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: trichome differentiation, response to gibberellin stimulus, response to cytokinin stimulus, regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: GIS (GLABROUS INFLORESCENCE STEMS); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT3G58070.1); Has 313 Blast hits to 311 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 310; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G06650.1p  transcript_id AT5G06650.1  protein_id AT5G06650.1p  transcript_id AT5G06650.1  
At5g06660	chr5:002046863	0.0	W/2046863-2047453	AT5G06660.1  CDS  gene_syn F15M7.19, F15M7_19  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF841, eukaryotic (InterPro:IPR008559); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12030.1); Has 193 Blast hits to 193 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 124; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT5G06660.1p  transcript_id AT5G06660.1  protein_id AT5G06660.1p  transcript_id AT5G06660.1  
At5g06670	chr5:002054790	0.0	C/2054790-2055019,2054598-2054695,2054328-2054417,2054021-2054100,2053416-2053481,2053285-2053338,2053110-2053169,2052611-2052689,2052313-2052380,2052101-2052163,2051831-2051935,2051533-2051637,2051295-2051402,2051058-2051210,2050777-2050926,2050495-2050650,2049988-2050200,2049763-2049903,2049546-2049671,2049393-2049443,2049180-2049227,2048914-2049069,2048243-2048803	AT5G06670.1  CDS  gene_syn F15M7.20, F15M7_20  go_component microtubule associated complex|GO:0005875||IEA  go_component chloroplast|GO:0009507||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product ATP binding / microtubule motor  note ATP binding / microtubule motor; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex, chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin motor protein-related (TAIR:AT3G12020.1); Has 40993 Blast hits to 27137 proteins in 1155 species: Archae - 378; Bacteria - 3145; Metazoa - 21042; Fungi - 3451; Plants - 2097; Viruses - 80; Other Eukaryotes - 10800 (source: NCBI BLink).  protein_id AT5G06670.1p  transcript_id AT5G06670.1  protein_id AT5G06670.1p  transcript_id AT5G06670.1  
At5g06680	chr5:002056741	0.0	W/2056741-2058995,2059108-2059369	AT5G06680.1  CDS  gene_syn ATSPC98, MPH15.2, MPH15_2, SPC98, SPINDLE POLE BODY COMPONENT 98  gene SPC98  function Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.  go_component nuclear envelope|GO:0005635|12006626|IDA  go_component internal side of plasma membrane|GO:0009898|12006626|IDA  go_process microtubule nucleation|GO:0007020|12006626|TAS  go_function tubulin binding|GO:0015631|12006626|ISS  product SPC98 (SPINDLE POLE BODY COMPONENT 98); tubulin binding  note SPINDLE POLE BODY COMPONENT 98 (SPC98); FUNCTIONS IN: tubulin binding; INVOLVED IN: microtubule nucleation; LOCATED IN: nuclear envelope, internal side of plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259), Gamma tubulin complex protein 3 (InterPro:IPR015697); BEST Arabidopsis thaliana protein match is: tubulin family protein (TAIR:AT5G17410.2); Has 1085 Blast hits to 953 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 602; Fungi - 241; Plants - 88; Viruses - 0; Other Eukaryotes - 154 (source: NCBI BLink).  protein_id AT5G06680.1p  transcript_id AT5G06680.1  protein_id AT5G06680.1p  transcript_id AT5G06680.1  
At5g06685	chr5:002060153	0.0	C/2060153-2060234	AT5G06685.1  tRNA  gene_syn 67597.TRNA-SER-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: GCT)  transcript_id AT5G06685.1  
At5g06690	chr5:002061583	0.0	C/2061583-2061956,2061136-2061210,2060852-2061047	AT5G06690.2  CDS  gene_syn WCRKC THIOREDOXIN 1, WCRKC1  gene WCRKC1  function Encodes a thioredoxin (WCRKC1) localized in chloroplast stroma. Contains a WCRKC motif.  go_process cell redox homeostasis|GO:0045454||IEA  product WCRKC1 (WCRKC THIOREDOXIN 1)  note WCRKC THIOREDOXIN 1 (WCRKC1); INVOLVED IN: cell redox homeostasis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: WCRKC2 (WCRKC THIOREDOXIN 2) (TAIR:AT5G04260.1); Has 1017 Blast hits to 1017 proteins in 239 species: Archae - 6; Bacteria - 446; Metazoa - 19; Fungi - 8; Plants - 80; Viruses - 0; Other Eukaryotes - 458 (source: NCBI BLink).  protein_id AT5G06690.2p  transcript_id AT5G06690.2  protein_id AT5G06690.2p  transcript_id AT5G06690.2  
At5g06690	chr5:002061583	0.0	C/2061583-2061956,2061136-2061210,2060981-2061047,2060872-2060889,2060651-2060749	AT5G06690.1  CDS  gene_syn WCRKC THIOREDOXIN 1, WCRKC1  gene WCRKC1  function Encodes a thioredoxin (WCRKC1) localized in chloroplast stroma. Contains a WCRKC motif.  go_component chloroplast thylakoid|GO:0009534|19259774|IDA  go_component chloroplast stroma|GO:0009570|19259774|IDA  go_process cell redox homeostasis|GO:0045454||IEA  product WCRKC1 (WCRKC THIOREDOXIN 1)  note WCRKC THIOREDOXIN 1 (WCRKC1); INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast stroma, chloroplast thylakoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: WCRKC2 (WCRKC THIOREDOXIN 2) (TAIR:AT5G04260.1); Has 5314 Blast hits to 5308 proteins in 1174 species: Archae - 58; Bacteria - 2489; Metazoa - 397; Fungi - 188; Plants - 443; Viruses - 0; Other Eukaryotes - 1739 (source: NCBI BLink).  protein_id AT5G06690.1p  transcript_id AT5G06690.1  protein_id AT5G06690.1p  transcript_id AT5G06690.1  
At5g06700	chr5:002063638	0.0	W/2063638-2064563,2064646-2064838,2064921-2065114,2065206-2065364,2065456-2065810	AT5G06700.1  CDS  gene_syn MPH15.5, MPH15_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12060.1); Has 17239 Blast hits to 5249 proteins in 395 species: Archae - 12; Bacteria - 1942; Metazoa - 4813; Fungi - 2412; Plants - 768; Viruses - 494; Other Eukaryotes - 6798 (source: NCBI BLink).  protein_id AT5G06700.1p  transcript_id AT5G06700.1  protein_id AT5G06700.1p  transcript_id AT5G06700.1  
At5g06710	chr5:002069969	0.0	C/2069969-2070284,2069093-2069490	AT5G06710.2  CDS  gene_syn HAT14, HOMEOBOX FROM ARABIDOPSIS THALIANA, MPH15.6, MPH15_6  gene HAT14  function Homeobox-leucine zipper protein.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product HAT14 (HOMEOBOX FROM ARABIDOPSIS THALIANA); DNA binding / transcription factor  note HOMEOBOX FROM ARABIDOPSIS THALIANA (HAT14); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: HAT1; DNA binding / transcription factor (TAIR:AT4G17460.1); Has 306 Blast hits to 305 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 299; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G06710.2p  transcript_id AT5G06710.2  protein_id AT5G06710.2p  transcript_id AT5G06710.2  
At5g06710	chr5:002069969	0.0	C/2069969-2070284,2069165-2069490,2068963-2069042,2068305-2068593	AT5G06710.1  CDS  gene_syn HAT14, HOMEOBOX FROM ARABIDOPSIS THALIANA, MPH15.6, MPH15_6  gene HAT14  function Homeobox-leucine zipper protein.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product HAT14 (HOMEOBOX FROM ARABIDOPSIS THALIANA); DNA binding / transcription factor  note HOMEOBOX FROM ARABIDOPSIS THALIANA (HAT14); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Homeodomain-like (InterPro:IPR009057), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: HAT22; transcription factor (TAIR:AT4G37790.1); Has 5160 Blast hits to 5144 proteins in 372 species: Archae - 2; Bacteria - 0; Metazoa - 3383; Fungi - 218; Plants - 1459; Viruses - 3; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT5G06710.1p  transcript_id AT5G06710.1  protein_id AT5G06710.1p  transcript_id AT5G06710.1  
At5g06720	chr5:002078627	0.0	C/2078627-2078857,2078336-2078527,2078065-2078230,2077567-2077985	AT5G06720.1  CDS  gene_syn MPH15.8, MPH15_8  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT5G06730.1); Has 2941 Blast hits to 2925 proteins in 230 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 109; Plants - 2780; Viruses - 2; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT5G06720.1p  transcript_id AT5G06720.1  protein_id AT5G06720.1p  transcript_id AT5G06720.1  
At5g06730	chr5:002081388	0.0	C/2081388-2081621,2081103-2081294,2080781-2080946,2080207-2080691	AT5G06730.1  CDS  gene_syn MPH15.9, MPH15_9  go_component plasma membrane|GO:0005886|17151019|IDA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: plasma membrane; EXPRESSED IN: root, cultured cell; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT5G06720.1); Has 2943 Blast hits to 2927 proteins in 230 species: Archae - 0; Bacteria - 5; Metazoa - 2; Fungi - 106; Plants - 2785; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT5G06730.1p  transcript_id AT5G06730.1  protein_id AT5G06730.1p  transcript_id AT5G06730.1  
At5g06740	chr5:002084094	0.0	W/2084094-2086052	AT5G06740.1  CDS  gene_syn MPH15.10, MPH15_10  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product lectin protein kinase family protein  note lectin protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin protein kinase, putative (TAIR:AT3G08870.1); Has 91406 Blast hits to 90211 proteins in 3326 species: Archae - 67; Bacteria - 8152; Metazoa - 39529; Fungi - 7216; Plants - 20217; Viruses - 464; Other Eukaryotes - 15761 (source: NCBI BLink).  protein_id AT5G06740.1p  transcript_id AT5G06740.1  protein_id AT5G06740.1p  transcript_id AT5G06740.1  
At5g06750	chr5:002087924	0.0	C/2087924-2088245,2087178-2087554,2086739-2086975,2086403-2086648	AT5G06750.1  CDS  gene_syn MPH15.11, MPH15_11  go_component mitochondrion|GO:0005739||IEA  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C family protein / PP2C family protein  note protein phosphatase 2C family protein / PP2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: mitochondrion, protein serine/threonine phosphatase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C family protein / PP2C family protein (TAIR:AT5G66080.1); Has 3459 Blast hits to 3458 proteins in 213 species: Archae - 0; Bacteria - 4; Metazoa - 1097; Fungi - 381; Plants - 1276; Viruses - 5; Other Eukaryotes - 696 (source: NCBI BLink).  protein_id AT5G06750.1p  transcript_id AT5G06750.1  protein_id AT5G06750.1p  transcript_id AT5G06750.1  
At5g06750	chr5:002087924	0.0	C/2087924-2088245,2087178-2087554,2086739-2086975,2086403-2086648	AT5G06750.3  CDS  gene_syn MPH15.11, MPH15_11  go_component mitochondrion|GO:0005739||IEA  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C family protein / PP2C family protein  note protein phosphatase 2C family protein / PP2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: mitochondrion, protein serine/threonine phosphatase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C family protein / PP2C family protein (TAIR:AT5G66080.1); Has 3459 Blast hits to 3458 proteins in 213 species: Archae - 0; Bacteria - 4; Metazoa - 1097; Fungi - 381; Plants - 1276; Viruses - 5; Other Eukaryotes - 696 (source: NCBI BLink).  protein_id AT5G06750.3p  transcript_id AT5G06750.3  protein_id AT5G06750.3p  transcript_id AT5G06750.3  
At5g06750	chr5:002088731	0.0	C/2088731-2088806,2087178-2087554,2086739-2086975,2086403-2086648	AT5G06750.2  CDS  gene_syn MPH15.11, MPH15_11  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C family protein / PP2C family protein  note protein phosphatase 2C family protein / PP2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT3G51370.2); Has 2906 Blast hits to 2905 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 867; Fungi - 355; Plants - 1147; Viruses - 3; Other Eukaryotes - 534 (source: NCBI BLink).  protein_id AT5G06750.2p  transcript_id AT5G06750.2  protein_id AT5G06750.2p  transcript_id AT5G06750.2  
At5g06755	chr5:002089167	0.0	C/2089167-2089287,2088847-2089085	AT5G06755.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT5G06755.1p  transcript_id AT5G06755.1  protein_id AT5G06755.1p  transcript_id AT5G06755.1  
At5g06760	chr5:002090227	0.0	C/2090227-2090313,2089754-2090143	AT5G06760.1  CDS  gene_syn MPH15.12, MPH15_12  go_process embryonic development|GO:0009790||IEA  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||ISS  go_function molecular_function|GO:0003674||ND  product late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein  note late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy, embryonic development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: dry seed stage, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant (LEA) group 1 (InterPro:IPR005513); Has 477 Blast hits to 328 proteins in 98 species: Archae - 0; Bacteria - 70; Metazoa - 102; Fungi - 37; Plants - 214; Viruses - 1; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT5G06760.1p  transcript_id AT5G06760.1  protein_id AT5G06760.1p  transcript_id AT5G06760.1  
At5g06770	chr5:002092709	0.0	C/2092709-2092787,2092106-2092166,2090937-2091519	AT5G06770.1  CDS  gene_syn MPH15.13, MPH15_13  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product KH domain-containing protein / zinc finger (CCCH type) family protein  note KH domain-containing protein / zinc finger (CCCH type) family protein; FUNCTIONS IN: transcription factor activity, nucleic acid binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein / zinc finger (CCCH type) family protein (TAIR:AT3G12130.1); Has 1041 Blast hits to 945 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 697; Fungi - 43; Plants - 189; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).  protein_id AT5G06770.1p  transcript_id AT5G06770.1  protein_id AT5G06770.1p  transcript_id AT5G06770.1  
At5g06780	chr5:002096270	0.0	C/2096270-2096377,2096092-2096201,2095889-2095997,2095618-2095776,2095023-2095091,2094590-2094817,2094444-2094512,2094283-2094346,2094147-2094193	AT5G06780.1  CDS  gene_syn MPH15.14, MPH15_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product emsy N terminus domain-containing protein / ENT domain-containing protein  note emsy N terminus domain-containing protein / ENT domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ENT (InterPro:IPR005491), Tudor-like, plant (InterPro:IPR014002); BEST Arabidopsis thaliana protein match is: emsy N terminus domain-containing protein / ENT domain-containing protein (TAIR:AT3G12140.2); Has 145 Blast hits to 134 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G06780.1p  transcript_id AT5G06780.1  protein_id AT5G06780.1p  transcript_id AT5G06780.1  
At5g06790	chr5:002098088	0.0	C/2098088-2098717	AT5G06790.1  CDS  gene_syn MPH15.15, MPH15_15  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57950.1); Has 28 Blast hits to 28 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G06790.1p  transcript_id AT5G06790.1  protein_id AT5G06790.1p  transcript_id AT5G06790.1  
At5g06800	chr5:002103374	0.0	W/2103374-2103796,2103888-2104113,2104540-2104616,2104700-2104739,2104834-2104888,2105099-2105168,2105444-2105680	AT5G06800.1  CDS  gene_syn MPH15.16, MPH15_16  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT2G01060.1); Has 907 Blast hits to 901 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 6; Plants - 885; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT5G06800.1p  transcript_id AT5G06800.1  protein_id AT5G06800.1p  transcript_id AT5G06800.1  
At5g06805	chr5:002106097	0.0	C/2106097-2108020	AT5G06805.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G36905.1); similar to Ribonuclease H [Medicago truncatula] (GB:ABD28505.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)  
At5g06810	chr5:002108493	0.0	W/2108493-2110172,2110511-2112256	AT5G06810.1  CDS  gene_syn MPH15.18, MPH15_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial transcription termination factor-related / mTERF-related  note mitochondrial transcription termination factor-related / mTERF-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19650.1); Has 346 Blast hits to 202 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 0; Plants - 316; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G06810.1p  transcript_id AT5G06810.1  protein_id AT5G06810.1p  transcript_id AT5G06810.1  
At5g06820	chr5:002112994	0.0	W/2112994-2113087,2113360-2113492,2113570-2113641,2113742-2113807,2113892-2113963,2114062-2114130,2114218-2114289,2114381-2114446,2114525-2114590,2114674-2115008,2115093-2115361,2115447-2115712,2115813-2115960,2116036-2116175,2116260-2116416,2116481-2116663	AT5G06820.1  CDS  gene_syn MPH15.19, MPH15_19, SRF2, STRUBBELIG-RECEPTOR FAMILY 2  gene SRF2  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product SRF2 (STRUBBELIG-RECEPTOR FAMILY 2); ATP binding / kinase/ protein serine/threonine kinase  note STRUBBELIG-RECEPTOR FAMILY 2 (SRF2); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: SRF8 (STRUBBELIG-RECEPTOR FAMILY 8); ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT4G22130.1); Has 95772 Blast hits to 73253 proteins in 2781 species: Archae - 51; Bacteria - 7666; Metazoa - 34990; Fungi - 4473; Plants - 37509; Viruses - 178; Other Eukaryotes - 10905 (source: NCBI BLink).  protein_id AT5G06820.1p  transcript_id AT5G06820.1  protein_id AT5G06820.1p  transcript_id AT5G06820.1  
At5g06830	chr5:002119499	0.0	C/2119499-2119559,2119220-2119354,2118856-2118950,2118689-2118783,2118462-2118597,2118232-2118381,2117634-2118137,2117345-2117553,2117131-2117263,2116882-2117013	AT5G06830.1  CDS  gene_syn MPH15.20, MPH15_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF773 (InterPro:IPR008491); Has 301 Blast hits to 298 proteins in 82 species: Archae - 7; Bacteria - 7; Metazoa - 191; Fungi - 5; Plants - 24; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT5G06830.1p  transcript_id AT5G06830.1  protein_id AT5G06830.1p  transcript_id AT5G06830.1  
At5g06839	chr5:002120911	0.0	W/2120911-2120984,2121069-2121190,2121562-2121653,2122113-2122178,2122287-2122346,2122434-2122511,2122603-2122684,2122775-2123049,2124194-2124448,2126065-2126217	AT5G06839.2  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process signal transduction|GO:0007165||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  product bZIP family transcription factor  note bZIP family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: signal transduction, protein amino acid phosphorylation, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: leaf whorl, flower, root, seed; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Bcr-Abl oncoprotein oligomerisation (InterPro:IPR015123), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP family transcription factor (TAIR:AT1G08320.3); Has 526 Blast hits to 524 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 59; Fungi - 2; Plants - 438; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT5G06839.2p  transcript_id AT5G06839.2  protein_id AT5G06839.2p  transcript_id AT5G06839.2  
At5g06839	chr5:002120911	0.0	W/2120911-2120984,2121069-2121190,2121562-2121653,2122113-2122178,2122287-2122346,2122434-2122511,2122603-2122684,2122778-2123049,2124194-2124448,2126065-2126217	AT5G06839.1  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  product bZIP family transcription factor  note bZIP family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: leaf whorl, flower, root, seed; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP family transcription factor (TAIR:AT1G08320.3); Has 525 Blast hits to 523 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 59; Fungi - 2; Plants - 439; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT5G06839.1p  transcript_id AT5G06839.1  protein_id AT5G06839.1p  transcript_id AT5G06839.1  
At5g06850	chr5:002127200	0.0	C/2127200-2129209	AT5G06850.1  CDS  gene_syn MOJ9.2, MOJ9_2  go_process tryptophan biosynthetic process|GO:0000162||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: tryptophan biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal, plant (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT5G48060.1); Has 1175 Blast hits to 999 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 573; Fungi - 10; Plants - 560; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT5G06850.1p  transcript_id AT5G06850.1  protein_id AT5G06850.1p  transcript_id AT5G06850.1  
At5g06865	chr5:002132197	0.0	C/2132197-2133746	AT5G06865.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT5G06860  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G06865.1  
At5g06865	chr5:002132276	0.0	C/2132276-2133743	AT5G06865.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT5G06860  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G06865.2  
At5g06860	chr5:002132373	0.0	W/2132373-2132913,2132983-2133434	AT5G06860.1  CDS  gene_syn ATPGIP1, MOJ9.3, MOJ9_3, PGIP1, POLYGALACTURONASE INHIBITING PROTEIN 1  gene PGIP1  function Encodes a polygalacturonase inhibiting protein involved in defense response. PGIPs inhibit the function of cell wall pectin degrading enzymes such as those produced by fungal pathogens. PGIP1 is induced by fungal infection.  go_component cell wall|GO:0005618|14595688|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process defense response|GO:0006952||ISS  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1); protein binding  note POLYGALACTURONASE INHIBITING PROTEIN 1 (PGIP1); FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction, defense response; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: PGIP2 (POLYGALACTURONASE INHIBITING PROTEIN 2); protein binding (TAIR:AT5G06870.1); Has 26686 Blast hits to 10032 proteins in 535 species: Archae - 16; Bacteria - 850; Metazoa - 2893; Fungi - 136; Plants - 21008; Viruses - 0; Other Eukaryotes - 1783 (source: NCBI BLink).  protein_id AT5G06860.1p  transcript_id AT5G06860.1  protein_id AT5G06860.1p  transcript_id AT5G06860.1  
At5g06870	chr5:002133941	0.0	W/2133941-2134481,2134565-2135016	AT5G06870.1  CDS  gene_syn MOJ9.4, MOJ9_4, PGIP2, POLYGALACTURONASE INHIBITING PROTEIN 2  gene PGIP2  function Encodes a polygalacturonase inhibiting protein involved in plant defense response. PGIPs inhibit the activity of pectin degrading enzymes such as those produced by fungal pathogens. PGIP2 is induced by fungal infection and methyl jasmonate.  go_component cell wall|GO:0005618|14595688|IDA  go_component cell wall|GO:0005618|15593128|IDA  go_component cell wall|GO:0005618|16287169|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process defense response|GO:0006952||ISS  go_process signal transduction|GO:0007165|11751054|IC  go_process response to salt stress|GO:0009651|11351099|IEP  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product PGIP2 (POLYGALACTURONASE INHIBITING PROTEIN 2); protein binding  note POLYGALACTURONASE INHIBITING PROTEIN 2 (PGIP2); FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction, response to salt stress, defense response; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1); protein binding (TAIR:AT5G06860.1); Has 28446 Blast hits to 10950 proteins in 536 species: Archae - 26; Bacteria - 1296; Metazoa - 3373; Fungi - 159; Plants - 21665; Viruses - 0; Other Eukaryotes - 1927 (source: NCBI BLink).  protein_id AT5G06870.1p  transcript_id AT5G06870.1  protein_id AT5G06870.1p  transcript_id AT5G06870.1  
At5g06890	chr5:002135743	0.0	W/2135743-2135943	AT5G06890.1  CDS  gene_syn MOJ9.5, MOJ9_5  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: RNA binding (TAIR:AT5G12280.1); Has 26 Blast hits to 25 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G06890.1p  transcript_id AT5G06890.1  protein_id AT5G06890.1p  transcript_id AT5G06890.1  
At5g06900	chr5:002137029	0.0	C/2137029-2137925,2136160-2136786	AT5G06900.1  CDS  gene_syn CYP93D1, MOJ9.6, MOJ9_6  gene CYP93D1  function member of CYP93D  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP93D1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP93D1; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP712A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT2G42250.1); Has 22752 Blast hits to 22649 proteins in 1230 species: Archae - 21; Bacteria - 1829; Metazoa - 10181; Fungi - 4239; Plants - 5663; Viruses - 3; Other Eukaryotes - 816 (source: NCBI BLink).  protein_id AT5G06900.1p  transcript_id AT5G06900.1  protein_id AT5G06900.1p  transcript_id AT5G06900.1  
At5g06905	chr5:002139191	0.0	C/2139191-2140078,2138438-2139115	AT5G06905.1  CDS  gene_syn CYP712A2  gene CYP712A2  function member of CYP712A  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP712A2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP712A2; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973); BEST Arabidopsis thaliana protein match is: CYP712A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT2G42250.1); Has 24026 Blast hits to 23878 proteins in 1311 species: Archae - 32; Bacteria - 2386; Metazoa - 10454; Fungi - 4501; Plants - 5720; Viruses - 6; Other Eukaryotes - 927 (source: NCBI BLink).  protein_id AT5G06905.1p  transcript_id AT5G06905.1  protein_id AT5G06905.1p  transcript_id AT5G06905.1  
At5g06910	chr5:002140598	0.0	W/2140598-2140693,2141004-2141102,2141179-2141280,2141397-2141456,2141548-2141654,2141726-2141808,2142127-2142223,2142315-2142525	AT5G06910.1  CDS  gene_syn ATJ6, Arabidopsis J-domain protein 6, MOJ9.8, MOJ9_8  gene ATJ6  function DnaJ homologue, contains J domain which is common in all known DnaJ proteins but missing G/F domain.  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component nucleus|GO:0005634||ISS  go_process protein folding|GO:0006457||ISS  product ATJ6 (Arabidopsis J-domain protein 6); heat shock protein binding / unfolded protein binding  note Arabidopsis J-domain protein 6 (ATJ6); FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT3G12170.1); Has 16397 Blast hits to 16392 proteins in 1945 species: Archae - 108; Bacteria - 5166; Metazoa - 3578; Fungi - 1536; Plants - 1230; Viruses - 19; Other Eukaryotes - 4760 (source: NCBI BLink).  protein_id AT5G06910.1p  transcript_id AT5G06910.1  protein_id AT5G06910.1p  transcript_id AT5G06910.1  
At5g06920	chr5:002142858	0.0	W/2142858-2143919	AT5G06920.1  CDS  gene_syn FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 21 PRECURSOR, FLA21, MOJ9.9, MOJ9_9  gene FLA21  go_function molecular_function|GO:0003674||ND  product FLA21 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 21 PRECURSOR)  note FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 21 PRECURSOR (FLA21); FUNCTIONS IN: molecular_function unknown; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15190.1); Has 61 Blast hits to 51 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G06920.1p  transcript_id AT5G06920.1  protein_id AT5G06920.1p  transcript_id AT5G06920.1  
At5g06930	chr5:002145139	0.0	W/2145139-2146169,2146263-2146449,2146528-2146737,2146819-2146992,2147076-2147240,2147352-2147465,2147559-2147849	AT5G06930.1  CDS  gene_syn MOJ9.10, MOJ9_10  go_component chloroplast|GO:0009507||IEA  product unknown protein  note LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2); Has 3144 Blast hits to 1363 proteins in 247 species: Archae - 2; Bacteria - 721; Metazoa - 835; Fungi - 297; Plants - 80; Viruses - 10; Other Eukaryotes - 1199 (source: NCBI BLink).  protein_id AT5G06930.1p  transcript_id AT5G06930.1  protein_id AT5G06930.1p  transcript_id AT5G06930.1  
At5g06940	chr5:002148500	0.0	C/2148500-2150771,2148078-2148424	AT5G06940.1  CDS  gene_syn MOJ9.11, MOJ9_11  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: HSL1 (HAESA-Like 1); ATP binding / kinase/ protein serine/threonine kinase (TAIR:AT1G28440.1); Has 102254 Blast hits to 69686 proteins in 1932 species: Archae - 60; Bacteria - 6807; Metazoa - 37639; Fungi - 4026; Plants - 40736; Viruses - 247; Other Eukaryotes - 12739 (source: NCBI BLink).  protein_id AT5G06940.1p  transcript_id AT5G06940.1  protein_id AT5G06940.1p  transcript_id AT5G06940.1  
At5g06950	chr5:002152323	0.0	W/2152323-2152388,2152488-2152559,2152648-2152707,2152829-2152906,2152984-2153035,2153323-2153594,2153688-2153933,2154028-2154174	AT5G06950.1  CDS  gene_syn AHBP-1B, MOJ9.12, MOJ9_12, TGA2  gene AHBP-1B  function Transcription factor of the B-ZIP family that has high affinity for C-box motifs. Interacts with NPR1 and may regulate PR gene expression. Phosphorylated by a CK2-like protein in vitro. Phosphorylation is enhanced by salicylic acid treatment.  go_component nucleus|GO:0005634|11479572|IDA  go_component nucleus|GO:0005634|15821979|IDA  go_component cytoplasm|GO:0005737|15821979|IDA  go_process response to xenobiotic stimulus|GO:0009410|18984675|IGI  go_process systemic acquired resistance, salicylic acid mediated signaling pathway|GO:0009862|15821979|TAS  go_function DNA binding|GO:0003677|8628224|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700|15821979|TAS  go_function transcription factor activity|GO:0003700|17172357|IDA  go_function transcription factor activity|GO:0003700||ISS  go_function transcription activator activity|GO:0016563|12084833|IDA  go_function transcription repressor activity|GO:0016564|17369431|IGI  product AHBP-1B; DNA binding / transcription activator/ transcription factor/ transcription repressor  note AHBP-1B; FUNCTIONS IN: transcription repressor activity, transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: response to xenobiotic stimulus, systemic acquired resistance, salicylic acid mediated signaling pathway; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: TGA6 (TGACG MOTIF-BINDING FACTOR 6); DNA binding / transcription factor (TAIR:AT3G12250.2); Has 570 Blast hits to 569 proteins in 46 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 4; Plants - 518; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT5G06950.1p  transcript_id AT5G06950.1  protein_id AT5G06950.1p  transcript_id AT5G06950.1  
At5g06950	chr5:002152323	0.0	W/2152323-2152388,2152488-2152559,2152648-2152707,2152829-2152906,2152984-2153035,2153323-2153594,2153688-2153933,2154028-2154174	AT5G06950.2  CDS  gene_syn AHBP-1B, MOJ9.12, MOJ9_12, TGA2  gene AHBP-1B  function Transcription factor of the B-ZIP family that has high affinity for C-box motifs. Interacts with NPR1 and may regulate PR gene expression. Phosphorylated by a CK2-like protein in vitro. Phosphorylation is enhanced by salicylic acid treatment.  go_component nucleus|GO:0005634|11479572|IDA  go_component nucleus|GO:0005634|15821979|IDA  go_component cytoplasm|GO:0005737|15821979|IDA  go_process response to xenobiotic stimulus|GO:0009410|18984675|IGI  go_process systemic acquired resistance, salicylic acid mediated signaling pathway|GO:0009862|15821979|TAS  go_function DNA binding|GO:0003677|8628224|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700|15821979|TAS  go_function transcription factor activity|GO:0003700|17172357|IDA  go_function transcription factor activity|GO:0003700||ISS  go_function transcription activator activity|GO:0016563|12084833|IDA  go_function transcription repressor activity|GO:0016564|17369431|IGI  product AHBP-1B; DNA binding / transcription activator/ transcription factor/ transcription repressor  note AHBP-1B; FUNCTIONS IN: transcription repressor activity, transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: response to xenobiotic stimulus, systemic acquired resistance, salicylic acid mediated signaling pathway; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: TGA6 (TGACG MOTIF-BINDING FACTOR 6); DNA binding / transcription factor (TAIR:AT3G12250.2); Has 570 Blast hits to 569 proteins in 46 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 4; Plants - 518; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT5G06950.2p  transcript_id AT5G06950.2  protein_id AT5G06950.2p  transcript_id AT5G06950.2  
At5g06950	chr5:002152323	0.0	W/2152323-2152388,2152488-2152559,2152648-2152707,2152829-2152906,2152984-2153035,2153323-2153594,2153688-2153933,2154028-2154174	AT5G06950.3  CDS  gene_syn AHBP-1B, MOJ9.12, MOJ9_12, TGA2  gene AHBP-1B  function Transcription factor of the B-ZIP family that has high affinity for C-box motifs. Interacts with NPR1 and may regulate PR gene expression. Phosphorylated by a CK2-like protein in vitro. Phosphorylation is enhanced by salicylic acid treatment.  go_component nucleus|GO:0005634|11479572|IDA  go_component nucleus|GO:0005634|15821979|IDA  go_component cytoplasm|GO:0005737|15821979|IDA  go_process response to xenobiotic stimulus|GO:0009410|18984675|IGI  go_process systemic acquired resistance, salicylic acid mediated signaling pathway|GO:0009862|15821979|TAS  go_function DNA binding|GO:0003677|8628224|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700|15821979|TAS  go_function transcription factor activity|GO:0003700|17172357|IDA  go_function transcription factor activity|GO:0003700||ISS  go_function transcription activator activity|GO:0016563|12084833|IDA  go_function transcription repressor activity|GO:0016564|17369431|IGI  product AHBP-1B; DNA binding / transcription activator/ transcription factor/ transcription repressor  note AHBP-1B; FUNCTIONS IN: transcription repressor activity, transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: response to xenobiotic stimulus, systemic acquired resistance, salicylic acid mediated signaling pathway; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: TGA6 (TGACG MOTIF-BINDING FACTOR 6); DNA binding / transcription factor (TAIR:AT3G12250.2); Has 570 Blast hits to 569 proteins in 46 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 4; Plants - 518; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT5G06950.3p  transcript_id AT5G06950.3  protein_id AT5G06950.3p  transcript_id AT5G06950.3  
At5g06950	chr5:002152323	0.0	W/2152323-2152388,2152488-2152559,2152648-2152707,2152829-2152906,2152984-2153035,2153323-2153594,2153688-2153933,2154028-2154174	AT5G06950.4  CDS  gene_syn AHBP-1B, MOJ9.12, MOJ9_12, TGA2  gene AHBP-1B  function Transcription factor of the B-ZIP family that has high affinity for C-box motifs. Interacts with NPR1 and may regulate PR gene expression. Phosphorylated by a CK2-like protein in vitro. Phosphorylation is enhanced by salicylic acid treatment.  go_component nucleus|GO:0005634|11479572|IDA  go_component nucleus|GO:0005634|15821979|IDA  go_component cytoplasm|GO:0005737|15821979|IDA  go_process response to xenobiotic stimulus|GO:0009410|18984675|IGI  go_process systemic acquired resistance, salicylic acid mediated signaling pathway|GO:0009862|15821979|TAS  go_function DNA binding|GO:0003677|8628224|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700|15821979|TAS  go_function transcription factor activity|GO:0003700|17172357|IDA  go_function transcription factor activity|GO:0003700||ISS  go_function transcription activator activity|GO:0016563|12084833|IDA  go_function transcription repressor activity|GO:0016564|17369431|IGI  product AHBP-1B; DNA binding / transcription activator/ transcription factor/ transcription repressor  note AHBP-1B; FUNCTIONS IN: transcription repressor activity, transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: response to xenobiotic stimulus, systemic acquired resistance, salicylic acid mediated signaling pathway; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: TGA6 (TGACG MOTIF-BINDING FACTOR 6); DNA binding / transcription factor (TAIR:AT3G12250.2); Has 570 Blast hits to 569 proteins in 46 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 4; Plants - 518; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT5G06950.4p  transcript_id AT5G06950.4  protein_id AT5G06950.4p  transcript_id AT5G06950.4  
At5g06960	chr5:002155742	0.0	W/2155742-2155807,2155890-2155961,2156053-2156112,2156213-2156290,2156366-2156417,2156573-2156844,2156924-2157169,2157254-2157400	AT5G06960.1  CDS  gene_syn MOJ9.13, MOJ9_13, OBF5, OCS-ELEMENT BINDING FACTOR 5, TGA5, TGACG MOTIF-BINDING FACTOR 5  gene OBF5  function Encodes a basic leucine zipper (B-ZIP) containing protein that interacts with NPR1 to promote expression of salicylic acid induced genes. Binds the ocs-element.  go_component nucleus|GO:0005634||IEA  go_process response to xenobiotic stimulus|GO:0009410|18984675|IGI  go_process defense response, incompatible interaction|GO:0009814|8718629|TAS  go_process salicylic acid mediated signaling pathway|GO:0009863|10659709|IDA  go_function DNA binding|GO:0003677|8252072|IDA  go_function DNA binding|GO:0003677|8252072|ISS  go_function DNA binding|GO:0003677||NAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700|8252072|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function protein binding|GO:0005515|8252072|IDA  product OBF5 (OCS-ELEMENT BINDING FACTOR 5); DNA binding / protein binding / transcription factor  note OCS-ELEMENT BINDING FACTOR 5 (OBF5); FUNCTIONS IN: protein binding, transcription factor activity, DNA binding; INVOLVED IN: response to xenobiotic stimulus, salicylic acid mediated signaling pathway, defense response, incompatible interaction; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: TGA6 (TGACG MOTIF-BINDING FACTOR 6); DNA binding / transcription factor (TAIR:AT3G12250.2); Has 537 Blast hits to 536 proteins in 46 species: Archae - 0; Bacteria - 6; Metazoa - 2; Fungi - 3; Plants - 496; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT5G06960.1p  transcript_id AT5G06960.1  protein_id AT5G06960.1p  transcript_id AT5G06960.1  
At5g06960	chr5:002155742	0.0	W/2155742-2155807,2155890-2155961,2156053-2156112,2156213-2156290,2156366-2156417,2156573-2156844,2156924-2157169,2157254-2157400	AT5G06960.2  CDS  gene_syn MOJ9.13, MOJ9_13, OBF5, OCS-ELEMENT BINDING FACTOR 5, TGA5, TGACG MOTIF-BINDING FACTOR 5  gene OBF5  function Encodes a basic leucine zipper (B-ZIP) containing protein that interacts with NPR1 to promote expression of salicylic acid induced genes. Binds the ocs-element.  go_component nucleus|GO:0005634||IEA  go_process response to xenobiotic stimulus|GO:0009410|18984675|IGI  go_process defense response, incompatible interaction|GO:0009814|8718629|TAS  go_process salicylic acid mediated signaling pathway|GO:0009863|10659709|IDA  go_function DNA binding|GO:0003677|8252072|IDA  go_function DNA binding|GO:0003677|8252072|ISS  go_function DNA binding|GO:0003677||NAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700|8252072|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function protein binding|GO:0005515|8252072|IDA  product OBF5 (OCS-ELEMENT BINDING FACTOR 5); DNA binding / protein binding / transcription factor  note OCS-ELEMENT BINDING FACTOR 5 (OBF5); FUNCTIONS IN: protein binding, transcription factor activity, DNA binding; INVOLVED IN: response to xenobiotic stimulus, salicylic acid mediated signaling pathway, defense response, incompatible interaction; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: TGA6 (TGACG MOTIF-BINDING FACTOR 6); DNA binding / transcription factor (TAIR:AT3G12250.2); Has 537 Blast hits to 536 proteins in 46 species: Archae - 0; Bacteria - 6; Metazoa - 2; Fungi - 3; Plants - 496; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT5G06960.2p  transcript_id AT5G06960.2  protein_id AT5G06960.2p  transcript_id AT5G06960.2  
At5g06970	chr5:002165997	0.0	C/2165997-2166004,2165705-2165880,2165554-2165618,2165024-2165354,2164645-2164711,2164362-2164512,2163837-2164004,2163636-2163746,2163149-2163358,2162780-2162881,2162466-2162684,2161993-2162067,2161818-2161895,2161475-2161657,2161230-2161385,2161030-2161122,2160852-2160923,2160309-2160426,2159986-2160164,2159818-2159902,2159592-2159696,2159407-2159513,2159076-2159153,2158890-2158985,2158707-2158802,2158431-2158607	AT5G06970.1  CDS  gene_syn MOJ9.14, MOJ9_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Munc13 homology 1 (InterPro:IPR014770), Protein of unknown function DUF810 (InterPro:IPR008528), Munc13 homology 2 (InterPro:IPR014772); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11670.1); Has 138 Blast hits to 130 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 43; Plants - 89; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G06970.1p  transcript_id AT5G06970.1  protein_id AT5G06970.1p  transcript_id AT5G06970.1  
At5g06980	chr5:002167799	0.0	W/2167799-2168109,2168216-2168378,2168592-2168687,2168776-2168885,2168986-2169133	AT5G06980.1  CDS  gene_syn MOJ9.15, MOJ9_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12320.1); Has 22 Blast hits to 21 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G06980.1p  transcript_id AT5G06980.1  protein_id AT5G06980.1p  transcript_id AT5G06980.1  
At5g06980	chr5:002167799	0.0	W/2167799-2168109,2168216-2168378,2168592-2168687,2168776-2168885,2168989-2169133	AT5G06980.2  CDS  gene_syn MOJ9.15, MOJ9_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12320.1); Has 18 Blast hits to 17 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G06980.2p  transcript_id AT5G06980.2  protein_id AT5G06980.2p  transcript_id AT5G06980.2  
At5g06990	chr5:002169699	0.0	W/2169699-2170484	AT5G06990.1  CDS  gene_syn MOJ9.16, MOJ9_16  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF617, plant (InterPro:IPR006460); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G21990.1); Has 136 Blast hits to 135 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G06990.1p  transcript_id AT5G06990.1  protein_id AT5G06990.1p  transcript_id AT5G06990.1  
At5g07000	chr5:002171651	0.0	C/2171651-2172694	AT5G07000.1  CDS  gene_syn ARABIDOPSIS THALIANA SULFOTRANSFERASE 2B, ATST2B, MOJ9.17, MOJ9_17, ST2B, SULFOTRANSFERASE 2B  gene ST2B  function Encodes a member of the sulfotransferase family of proteins. Although it has 85% amino acid identity with ST2A (At5g07010), this protein is not able to transfer a sulfate group to 11- or 12-hydroxyjasmonic acid in vitro. It may be able to act on structurally related jasmonates.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function sulfotransferase activity|GO:0008146||ISS  go_function hydroxyjasmonate sulfotransferase activity|GO:0080131|12637544|IDA  product ST2B (SULFOTRANSFERASE 2B); hydroxyjasmonate sulfotransferase/ sulfotransferase  note SULFOTRANSFERASE 2B (ST2B); FUNCTIONS IN: sulfotransferase activity, hydroxyjasmonate sulfotransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, LP.10 ten leaves visible, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Sulfotransferase (InterPro:IPR000863); BEST Arabidopsis thaliana protein match is: ST2A (SULFOTRANSFERASE 2A); hydroxyjasmonate sulfotransferase/ sulfotransferase (TAIR:AT5G07010.1); Has 2231 Blast hits to 2192 proteins in 152 species: Archae - 0; Bacteria - 166; Metazoa - 1444; Fungi - 1; Plants - 308; Viruses - 0; Other Eukaryotes - 312 (source: NCBI BLink).  protein_id AT5G07000.1p  transcript_id AT5G07000.1  protein_id AT5G07000.1p  transcript_id AT5G07000.1  
At5g07010	chr5:002174960	0.0	C/2174960-2176039	AT5G07010.1  CDS  gene_syn ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, ATST2A, MOJ9.18, MOJ9_18, ST2A, SULFOTRANSFERASE 2A  gene ST2A  function Encodes a sulfotransferase that acts specifically on 11- and 12-hydroxyjasmonic acid. Transcript levels for this enzyme are increased by treatments with jasmonic acid (JA), 12-hydroxyJA, JA-isoleucine, and 12-oxyphytodienoic acid (a JA precursor).  go_component cellular_component|GO:0005575||ND  go_process jasmonic acid metabolic process|GO:0009694|12637544|IDA  go_process response to jasmonic acid stimulus|GO:0009753|12637544|IEP  go_function sulfotransferase activity|GO:0008146||ISS  go_function hydroxyjasmonate sulfotransferase activity|GO:0080131|12637544|IDA  product ST2A (SULFOTRANSFERASE 2A); hydroxyjasmonate sulfotransferase/ sulfotransferase  note SULFOTRANSFERASE 2A (ST2A); FUNCTIONS IN: sulfotransferase activity, hydroxyjasmonate sulfotransferase activity; INVOLVED IN: response to jasmonic acid stimulus, jasmonic acid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sulfotransferase (InterPro:IPR000863); BEST Arabidopsis thaliana protein match is: ST2B (SULFOTRANSFERASE 2B); hydroxyjasmonate sulfotransferase/ sulfotransferase (TAIR:AT5G07000.1); Has 2232 Blast hits to 2194 proteins in 144 species: Archae - 0; Bacteria - 135; Metazoa - 1443; Fungi - 1; Plants - 309; Viruses - 0; Other Eukaryotes - 344 (source: NCBI BLink).  protein_id AT5G07010.1p  transcript_id AT5G07010.1  protein_id AT5G07010.1p  transcript_id AT5G07010.1  
At5g07020	chr5:002182117	0.0	C/2182117-2182284,2181734-2181871,2180669-2181070	AT5G07020.1  CDS  gene_syn MOJ9.19, MOJ9_19  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product proline-rich family protein  note proline-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 32 Blast hits to 32 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 1; Plants - 28; Viruses - 1; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G07020.1p  transcript_id AT5G07020.1  protein_id AT5G07020.1p  transcript_id AT5G07020.1  
At5g07030	chr5:002185193	0.0	C/2185193-2185717,2184211-2184691,2183600-2183961	AT5G07030.1  CDS  gene_syn MOJ9.20, MOJ9_20  go_component cell wall|GO:0005618|15593128|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartic-type endopeptidase  note aspartic-type endopeptidase; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT3G54400.1); Has 2321 Blast hits to 2309 proteins in 252 species: Archae - 0; Bacteria - 0; Metazoa - 775; Fungi - 336; Plants - 1121; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT5G07030.1p  transcript_id AT5G07030.1  protein_id AT5G07030.1p  transcript_id AT5G07030.1  
At5g07040	chr5:002190344	0.0	W/2190344-2190823	AT5G07040.1  CDS  gene_syn MOJ9.21, MOJ9_21  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G46160.1); Has 5615 Blast hits to 5599 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 1802; Fungi - 375; Plants - 2547; Viruses - 12; Other Eukaryotes - 879 (source: NCBI BLink).  protein_id AT5G07040.1p  transcript_id AT5G07040.1  protein_id AT5G07040.1p  transcript_id AT5G07040.1  
At5g07050	chr5:002193208	0.0	C/2193208-2193416,2193044-2193106,2192827-2192943,2192444-2192705,2192133-2192294,2191891-2192042,2191533-2191776	AT5G07050.1  CDS  gene_syn MOJ9.22, MOJ9_22  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  product unknown protein  note LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT2G40900.1); Has 2288 Blast hits to 2270 proteins in 280 species: Archae - 23; Bacteria - 774; Metazoa - 5; Fungi - 0; Plants - 641; Viruses - 0; Other Eukaryotes - 845 (source: NCBI BLink).  protein_id AT5G07050.1p  transcript_id AT5G07050.1  protein_id AT5G07050.1p  transcript_id AT5G07050.1  
At5g07060	chr5:002195777	0.0	C/2195777-2195872,2195328-2195597,2194992-2195215,2194394-2194895	AT5G07060.1  CDS  gene_syn MOJ9.23, MOJ9_23  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function RNA binding|GO:0003723||ISS  product zinc finger (CCCH-type) family protein  note zinc finger (CCCH-type) family protein; FUNCTIONS IN: RNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT1G07360.1); Has 421 Blast hits to 421 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 150; Fungi - 154; Plants - 41; Viruses - 2; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT5G07060.1p  transcript_id AT5G07060.1  protein_id AT5G07060.1p  transcript_id AT5G07060.1  
At5g07070	chr5:002196743	0.0	C/2196743-2198113	AT5G07070.1  CDS  gene_syn CBL-INTERACTING PROTEIN KINASE 2, CIPK2, SNF1-RELATED PROTEIN KINASE 3.2, SnRK3.2, T28J14.10, T28J14_10  gene CIPK2  function Encodes CBL-interacting protein kinase 2 (CIPK2).  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product CIPK2 (CBL-INTERACTING PROTEIN KINASE 2); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note CBL-INTERACTING PROTEIN KINASE 2 (CIPK2); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: signal transduction, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, leaf whorl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: SIP1 (SOS3-INTERACTING PROTEIN 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G58380.1); Has 95574 Blast hits to 94006 proteins in 3206 species: Archae - 82; Bacteria - 8546; Metazoa - 41309; Fungi - 8609; Plants - 18164; Viruses - 493; Other Eukaryotes - 18371 (source: NCBI BLink).  protein_id AT5G07070.1p  transcript_id AT5G07070.1  protein_id AT5G07070.1p  transcript_id AT5G07070.1  
At5g07080	chr5:002200353	0.0	W/2200353-2200992,2201263-2201975	AT5G07080.1  CDS  gene_syn T28J14.20, T28J14_20  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT3G47170.1); Has 1269 Blast hits to 1261 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 37; Plants - 1231; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G07080.1p  transcript_id AT5G07080.1  protein_id AT5G07080.1p  transcript_id AT5G07080.1  
At5g07090	chr5:002202410	0.0	W/2202410-2202412,2202732-2202809,2202918-2203098,2203186-2203283,2203377-2203805	AT5G07090.1  CDS  gene_syn T28J14.30  go_component plasma membrane|GO:0005886|17151019|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S4 (RPS4B)  note 40S ribosomal protein S4 (RPS4B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S4e, central (InterPro:IPR013845), Ribosomal protein S4e, N-terminal, conserved site (InterPro:IPR018199), RNA-binding S4 (InterPro:IPR002942), KOW (InterPro:IPR005824), Ribosomal protein S4e, N-terminal (InterPro:IPR013843), Ribosomal protein S4e (InterPro:IPR000876); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S4 (RPS4D) (TAIR:AT5G58420.1); Has 942 Blast hits to 942 proteins in 319 species: Archae - 166; Bacteria - 0; Metazoa - 329; Fungi - 122; Plants - 101; Viruses - 0; Other Eukaryotes - 224 (source: NCBI BLink).  protein_id AT5G07090.1p  transcript_id AT5G07090.1  protein_id AT5G07090.1p  transcript_id AT5G07090.1  
At5g07090	chr5:002202783	0.0	W/2202783-2202809,2202918-2203098,2203186-2203283,2203377-2203805	AT5G07090.2  CDS  gene_syn T28J14.30  go_component plasma membrane|GO:0005886|17151019|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S4 (RPS4B)  note 40S ribosomal protein S4 (RPS4B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S4e, central (InterPro:IPR013845), KOW (InterPro:IPR005824), RNA-binding S4 (InterPro:IPR002942), Ribosomal protein S4e, N-terminal (InterPro:IPR013843), Ribosomal protein S4e (InterPro:IPR000876); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S4 (RPS4D) (TAIR:AT5G58420.1); Has 935 Blast hits to 935 proteins in 319 species: Archae - 166; Bacteria - 0; Metazoa - 329; Fungi - 122; Plants - 101; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).  protein_id AT5G07090.2p  transcript_id AT5G07090.2  protein_id AT5G07090.2p  transcript_id AT5G07090.2  
At5g07100	chr5:002204313	0.0	W/2204313-2204465,2204608-2204733,2204813-2205165,2205263-2205391,2205479-2205647	AT5G07100.1  CDS  gene_syn T28J14.40, T28J14_40, WRKY26  gene WRKY26  function Encodes WRKY DNA-binding protein 26 (WRKY26).  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY26; transcription factor  note WRKY26; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY33; transcription factor (TAIR:AT2G38470.1); Has 3641 Blast hits to 1727 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3615; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT5G07100.1p  transcript_id AT5G07100.1  protein_id AT5G07100.1p  transcript_id AT5G07100.1  
At5g07100	chr5:002204813	0.0	W/2204813-2205165,2205263-2205391,2205479-2205647	AT5G07100.2  CDS  gene_syn T28J14.40, T28J14_40, WRKY26  gene WRKY26  function Encodes WRKY DNA-binding protein 26 (WRKY26).  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY26; transcription factor  note WRKY26; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY33; transcription factor (TAIR:AT2G38470.1); Has 3600 Blast hits to 1725 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3574; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT5G07100.2p  transcript_id AT5G07100.2  protein_id AT5G07100.2p  transcript_id AT5G07100.2  
At5g07110	chr5:002206121	0.0	W/2206121-2206771	AT5G07110.1  CDS  gene_syn PRA1.B6, PRENYLATED RAB ACCEPTOR 1.B6, T28J14.50  gene PRA1.B6  go_component endoplasmic reticulum|GO:0005783|18583532|IDA  go_process vesicle-mediated transport|GO:0016192|18583532|IDA  go_function molecular_function|GO:0003674||ND  product PRA1.B6 (PRENYLATED RAB ACCEPTOR 1.B6)  note PRENYLATED RAB ACCEPTOR 1.B6 (PRA1.B6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: PRA1.B3 (PRENYLATED RAB ACCEPTOR 1.B3) (TAIR:AT5G05380.1); Has 421 Blast hits to 421 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 72; Plants - 208; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT5G07110.1p  transcript_id AT5G07110.1  protein_id AT5G07110.1p  transcript_id AT5G07110.1  
At5g07120	chr5:002208276	0.0	C/2208276-2209355,2207999-2208208,2207644-2207904,2207476-2207562,2207065-2207145	AT5G07120.1  CDS  gene_syn SNX2b, SORTING NEXIN 2b, T28J14.60, T28J14_60  gene SNX2b  go_process cell communication|GO:0007154||IEA  go_function protein binding|GO:0005515||IEA  go_function phosphoinositide binding|GO:0035091||IEA  go_component cellular_component|GO:0005575||ND  go_process intracellular signaling cascade|GO:0007242||ISS  product SNX2b (SORTING NEXIN 2b); phosphoinositide binding / protein binding  note SORTING NEXIN 2b (SNX2b); FUNCTIONS IN: protein binding, phosphoinositide binding; INVOLVED IN: intracellular signaling cascade, cell communication; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Vps5 C-terminal (InterPro:IPR015404), Phox-like (InterPro:IPR001683); BEST Arabidopsis thaliana protein match is: SNX2a (SORTING NEXIN 2a); phosphoinositide binding (TAIR:AT5G58440.1); Has 1877 Blast hits to 1867 proteins in 192 species: Archae - 11; Bacteria - 46; Metazoa - 1184; Fungi - 380; Plants - 83; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).  protein_id AT5G07120.1p  transcript_id AT5G07120.1  protein_id AT5G07120.1p  transcript_id AT5G07120.1  
At5g07130	chr5:002210567	0.0	W/2210567-2210653,2210745-2210896,2210973-2211352,2211435-2212525	AT5G07130.1  CDS  gene_syn LAC13, T28J14.70, T28J14_70, laccase 13  gene LAC13  function putative laccase, a member of laccase family of genes (17 members in Arabidopsis).  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process lignin catabolic process|GO:0046274||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function laccase activity|GO:0008471|15940465|ISS  product LAC13 (laccase 13); laccase  note laccase 13 (LAC13); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: LAC3 (laccase 3); laccase (TAIR:AT2G30210.1); Has 7073 Blast hits to 5906 proteins in 969 species: Archae - 11; Bacteria - 2722; Metazoa - 491; Fungi - 2571; Plants - 901; Viruses - 0; Other Eukaryotes - 377 (source: NCBI BLink).  protein_id AT5G07130.1p  transcript_id AT5G07130.1  protein_id AT5G07130.1p  transcript_id AT5G07130.1  
At5g07135	chr5:002212678	0.0	C/2212678-2212748	AT5G07135.1  tRNA  gene_syn 67599.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: GCC)  transcript_id AT5G07135.1  
At5g07140	chr5:002212877	0.0	W/2212877-2213256,2213451-2214537,2214849-2215133	AT5G07140.1  CDS  gene_syn T28J14.80, T28J14_80  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G58520.1); Has 45658 Blast hits to 45308 proteins in 1393 species: Archae - 24; Bacteria - 2211; Metazoa - 21739; Fungi - 3071; Plants - 11556; Viruses - 236; Other Eukaryotes - 6821 (source: NCBI BLink).  protein_id AT5G07140.1p  transcript_id AT5G07140.1  protein_id AT5G07140.1p  transcript_id AT5G07140.1  
At5g07150	chr5:002215820	0.0	W/2215820-2215928,2216007-2216136,2216224-2216295,2216381-2216907,2216998-2217191,2217268-2217394,2217481-2217983	AT5G07150.1  CDS  gene_syn T28J14.90, T28J14_90  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G58540.3); Has 33433 Blast hits to 22593 proteins in 832 species: Archae - 23; Bacteria - 1246; Metazoa - 5743; Fungi - 851; Plants - 22711; Viruses - 681; Other Eukaryotes - 2178 (source: NCBI BLink).  protein_id AT5G07150.1p  transcript_id AT5G07150.1  protein_id AT5G07150.1p  transcript_id AT5G07150.1  
At5g07160	chr5:002220549	0.0	C/2220549-2220709,2220370-2220460,2220146-2220272,2219971-2220044	AT5G07160.1  CDS  gene_syn T28J14.100, T28J14_100  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  product DNA binding / transcription factor  note DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: BZIP61; DNA binding / transcription activator/ transcription factor (TAIR:AT3G58120.1); Has 379 Blast hits to 379 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 54; Fungi - 0; Plants - 320; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G07160.1p  transcript_id AT5G07160.1  protein_id AT5G07160.1p  transcript_id AT5G07160.1  
At5g07170	chr5:002222809	0.0	W/2222809-2223031,2223111-2223182,2223251-2223416,2223483-2223594,2223678-2223725,2223803-2223867,2223948-2224008,2224092-2224157,2224241-2224288,2224366-2224406,2224516-2224630,2224723-2224779,2224902-2224964,2225051-2225098	AT5G07170.1  CDS  gene_syn T28J14.110, T28J14_110  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62240.1); Has 41 Blast hits to 37 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G07170.1p  transcript_id AT5G07170.1  protein_id AT5G07170.1p  transcript_id AT5G07170.1  
At5g07180	chr5:002233139	0.0	C/2233139-2233232,2232590-2232728,2232423-2232494,2232263-2232334,2232105-2232176,2231950-2232021,2231782-2231853,2231633-2231704,2231473-2231544,2231329-2231397,2231171-2231242,2231008-2231079,2230851-2230922,2230704-2230775,2230557-2230628,2230389-2230460,2230230-2230301,2230066-2230137,2229909-2229980,2229758-2229829,2229606-2229677,2229434-2229505,2229283-2229356,2229073-2229201,2228647-2228985,2228184-2228554,2227787-2228107	AT5G07180.1  CDS  gene_syn ERECTA-LIKE 2, ERL2, T28J14.120, T28J14_120  gene ERL2  function Encodes a receptor-like kinase that, together with ER and ERL1 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. It is also important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. When heterozygous in an er/erl1 null background, plants are female sterile due to cell division defect in the integuments.  go_component endomembrane system|GO:0012505||IEA  go_process embryo sac development|GO:0009553|17652352|IGI  go_process stomatal complex morphogenesis|GO:0010103|16002616|IGI  go_process ovule development|GO:0048481|17652352|IGI  go_function kinase activity|GO:0016301||ISS  product ERL2 (ERECTA-LIKE 2); kinase  note ERECTA-LIKE 2 (ERL2); FUNCTIONS IN: kinase activity; INVOLVED IN: stomatal complex morphogenesis, embryo sac development, ovule development; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ERL1 (ERECTA-LIKE 1); kinase (TAIR:AT5G62230.1); Has 152824 Blast hits to 98795 proteins in 2375 species: Archae - 93; Bacteria - 12806; Metazoa - 62931; Fungi - 7240; Plants - 48915; Viruses - 442; Other Eukaryotes - 20397 (source: NCBI BLink).  protein_id AT5G07180.1p  transcript_id AT5G07180.1  protein_id AT5G07180.1p  transcript_id AT5G07180.1  
At5g07190	chr5:002237610	0.0	W/2237610-2237693,2237783-2237893,2238042-2238488	AT5G07190.1  CDS  gene_syn ARABIDOPSIS THALIANA SEED GENE 3, ATS3, T28J14.130, T28J14_130  gene ATS3  function Gene is expressed preferentially in the embryo and encodes a unique protein of unknown function.  go_component membrane|GO:0016020|17432890|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process embryonic development ending in seed dormancy|GO:0009793|10380802|TAS  go_function molecular_function|GO:0003674||ND  product ATS3 (ARABIDOPSIS THALIANA SEED GENE 3)  note ARABIDOPSIS THALIANA SEED GENE 3 (ATS3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: anchored to membrane, membrane; EXPRESSED IN: leaf whorl, embryo, carpel, seed, leaf; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Embryo-specific 3 (InterPro:IPR010417); BEST Arabidopsis thaliana protein match is: embryo-specific protein-related (TAIR:AT5G62210.1); Has 475 Blast hits to 394 proteins in 77 species: Archae - 0; Bacteria - 24; Metazoa - 137; Fungi - 20; Plants - 175; Viruses - 45; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT5G07190.1p  transcript_id AT5G07190.1  protein_id AT5G07190.1p  transcript_id AT5G07190.1  
At5g07190	chr5:002237783	0.0	W/2237783-2237893,2238042-2238488	AT5G07190.2  CDS  gene_syn ARABIDOPSIS THALIANA SEED GENE 3, ATS3, T28J14.130, T28J14_130  gene ATS3  function Gene is expressed preferentially in the embryo and encodes a unique protein of unknown function.  go_component membrane|GO:0016020|17432890|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process embryonic development ending in seed dormancy|GO:0009793|10380802|TAS  go_function molecular_function|GO:0003674||ND  product ATS3 (ARABIDOPSIS THALIANA SEED GENE 3)  note ARABIDOPSIS THALIANA SEED GENE 3 (ATS3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: anchored to membrane, membrane; EXPRESSED IN: leaf whorl, embryo, carpel, seed, leaf; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Embryo-specific 3 (InterPro:IPR010417); BEST Arabidopsis thaliana protein match is: embryo-specific protein-related (TAIR:AT5G62210.1); Has 472 Blast hits to 391 proteins in 75 species: Archae - 0; Bacteria - 24; Metazoa - 137; Fungi - 20; Plants - 172; Viruses - 45; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT5G07190.2p  transcript_id AT5G07190.2  protein_id AT5G07190.2p  transcript_id AT5G07190.2  
At5g07200	chr5:002244610	0.0	C/2244610-2245157,2244204-2244525,2243835-2244107	AT5G07200.1  CDS  gene_syn ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, ATGA20OX3, GA20OX3, GIBBERELLIN 20-OXIDASE 3, T28J14.140, T28J14_140, YAP169  gene YAP169  function encodes a gibberellin 20-oxidase.  go_component cellular_component|GO:0005575||ND  go_process gibberellin biosynthetic process|GO:0009686|15923331|TAS  go_process gibberellin biosynthetic process|GO:0009686|7630935|IDA  go_process gibberellin biosynthetic process|GO:0009686|7630935|TAS  go_function gibberellin 20-oxidase activity|GO:0045544|7630935|IDA  product YAP169; gibberellin 20-oxidase  note YAP169; FUNCTIONS IN: gibberellin 20-oxidase activity; INVOLVED IN: gibberellin biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: outer integument, fruit, seed; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: ATGA20OX4 (ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 4); gibberellin 20-oxidase (TAIR:AT1G60980.1); Has 5916 Blast hits to 5893 proteins in 679 species: Archae - 0; Bacteria - 733; Metazoa - 132; Fungi - 646; Plants - 3056; Viruses - 0; Other Eukaryotes - 1349 (source: NCBI BLink).  protein_id AT5G07200.1p  transcript_id AT5G07200.1  protein_id AT5G07200.1p  transcript_id AT5G07200.1  
At5g07210	chr5:002252237	0.0	W/2252237-2252360,2253173-2253352,2253465-2253920,2254048-2254124,2254430-2255158,2255252-2255362,2255613-2255699,2255809-2255856,2255965-2256018	AT5G07210.1  CDS  gene_syn ARABIDOPSIS RESPONSE REGULATOR 21, ARR21, T28J14.150, T28J14_150  gene ARR21  function member of Response Regulator: B- Type  go_component chloroplast|GO:0009507|18431481|IDA  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function two-component response regulator activity|GO:0000156|11574878|ISS  go_function two-component response regulator activity|GO:0000156|12068096|ISS  go_function two-component response regulator activity|GO:0000156||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ARR21 (ARABIDOPSIS RESPONSE REGULATOR 21); transcription factor/ two-component response regulator  note ARABIDOPSIS RESPONSE REGULATOR 21 (ARR21); FUNCTIONS IN: transcription factor activity, two-component response regulator activity; INVOLVED IN: cytokinin mediated signaling, regulation of transcription; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Response regulator, plant B-type (InterPro:IPR017053), CheY-like (InterPro:IPR011006), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Signal transduction response regulator, receiver region (InterPro:IPR001789), Homeodomain-related (InterPro:IPR012287), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: ARR13 (ARABIDOPSIS RESPONSE REGULATOR 13); transcription factor/ two-component response regulator (TAIR:AT2G27070.1); Has 22873 Blast hits to 22814 proteins in 1462 species: Archae - 256; Bacteria - 18597; Metazoa - 4; Fungi - 92; Plants - 1205; Viruses - 0; Other Eukaryotes - 2719 (source: NCBI BLink).  protein_id AT5G07210.1p  transcript_id AT5G07210.1  protein_id AT5G07210.1p  transcript_id AT5G07210.1  
At5g07215	chr5:002257475	0.0	C/2257475-2262962	AT5G07215.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 6.9e-34 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At5g07220	chr5:002266522	0.0	C/2266522-2266720,2266173-2266429,2265940-2266086,2265545-2265853	AT5G07220.1  CDS  gene_syn ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 3, ATBAG3, T28J14.160, T28J14_160  gene ATBAG3  function A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.  go_process protein modification process|GO:0006464||IEA  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process apoptosis|GO:0006915||ISS  go_process regulation of apoptosis|GO:0042981||ISS  go_function protein binding|GO:0005515||ISS  product ATBAG3 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 3); protein binding  note ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 3 (ATBAG3); FUNCTIONS IN: protein binding; INVOLVED IN: protein modification process, regulation of apoptosis, apoptosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Apoptosis regulator Bcl-2 protein, BAG (InterPro:IPR003103), Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: ATBAG2 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2); protein binding (TAIR:AT5G62100.2); Has 151 Blast hits to 151 proteins in 33 species: Archae - 0; Bacteria - 1; Metazoa - 14; Fungi - 14; Plants - 110; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT5G07220.1p  transcript_id AT5G07220.1  protein_id AT5G07220.1p  transcript_id AT5G07220.1  
At5g07225	chr5:002269828	0.0	C/2269828-2270227,2269642-2269679,2269372-2269493,2269004-2269112,2268642-2268677	AT5G07225.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT5G52140.1); Has 4676 Blast hits to 4667 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 1908; Fungi - 264; Plants - 1897; Viruses - 2; Other Eukaryotes - 605 (source: NCBI BLink).  protein_id AT5G07225.1p  transcript_id AT5G07225.1  protein_id AT5G07225.1p  transcript_id AT5G07225.1  
At5g07230	chr5:002271013	0.0	W/2271013-2271274,2271395-2271408	AT5G07230.1  CDS  gene_syn T28J14.170, T28J14_170  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT5G62080.1); Has 76 Blast hits to 76 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G07230.1p  transcript_id AT5G07230.1  protein_id AT5G07230.1p  transcript_id AT5G07230.1  
At5g07240	chr5:002272028	0.0	W/2272028-2272387,2273206-2274051	AT5G07240.1  CDS  gene_syn IQ-domain 24, IQD24, T28J14.180, T28J14_180  gene IQD24  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product IQD24 (IQ-domain 24); calmodulin binding  note IQ-domain 24 (IQD24); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQD23 (IQ-domain 23); calmodulin binding (TAIR:AT5G62070.1); Has 437 Blast hits to 430 proteins in 26 species: Archae - 0; Bacteria - 2; Metazoa - 30; Fungi - 0; Plants - 402; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G07240.1p  transcript_id AT5G07240.1  protein_id AT5G07240.1p  transcript_id AT5G07240.1  
At5g07250	chr5:002275589	0.0	C/2275589-2275935,2275222-2275385,2274968-2275131,2274632-2274741,2274437-2274551	AT5G07250.2  CDS  gene_syn ARABIDOPSIS RHOMBOID-LIKE PROTEIN 3, ATRBL3, T28J14.190, T28J14_190  gene ATRBL3  go_component integral to membrane|GO:0016021||IEA  go_function molecular_function|GO:0003674||ND  product ATRBL3 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 3)  note ARABIDOPSIS RHOMBOID-LIKE PROTEIN 3 (ATRBL3); FUNCTIONS IN: molecular_function unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: ATRBL2 (Arabidopsis thaliana Rhomboid-like 2); serine-type endopeptidase (TAIR:AT1G63120.1); Has 3136 Blast hits to 3136 proteins in 845 species: Archae - 73; Bacteria - 1541; Metazoa - 465; Fungi - 86; Plants - 178; Viruses - 0; Other Eukaryotes - 793 (source: NCBI BLink).  protein_id AT5G07250.2p  transcript_id AT5G07250.2  protein_id AT5G07250.2p  transcript_id AT5G07250.2  
At5g07250	chr5:002275589	0.0	C/2275589-2275935,2275222-2275385,2274968-2275131,2274632-2274882,2274437-2274551	AT5G07250.1  CDS  gene_syn ARABIDOPSIS RHOMBOID-LIKE PROTEIN 3, ATRBL3, T28J14.190, T28J14_190  gene ATRBL3  go_component integral to membrane|GO:0016021||IEA  go_function molecular_function|GO:0003674||ND  product ATRBL3 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 3)  note ARABIDOPSIS RHOMBOID-LIKE PROTEIN 3 (ATRBL3); FUNCTIONS IN: molecular_function unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: ATRBL2 (Arabidopsis thaliana Rhomboid-like 2); serine-type endopeptidase (TAIR:AT1G63120.1); Has 4072 Blast hits to 4072 proteins in 965 species: Archae - 91; Bacteria - 2083; Metazoa - 468; Fungi - 106; Plants - 207; Viruses - 0; Other Eukaryotes - 1117 (source: NCBI BLink).  protein_id AT5G07250.1p  transcript_id AT5G07250.1  protein_id AT5G07250.1p  transcript_id AT5G07250.1  
At5g07260	chr5:002278058	0.0	W/2278058-2278552,2278631-2278705,2278777-2278986,2279059-2279218,2279318-2279685,2279774-2280091	AT5G07260.1  CDS  gene_syn T28J14.200, T28J14_200  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product homeobox protein-related  note homeobox protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26920.1); Has 277 Blast hits to 255 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 277; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G07260.1p  transcript_id AT5G07260.1  protein_id AT5G07260.1p  transcript_id AT5G07260.1  
At5g07270	chr5:002280821	0.0	W/2280821-2280997,2281086-2281145,2281440-2281511,2281597-2281763,2281855-2282015,2282111-2282169,2282262-2282308,2282423-2282566,2282652-2282740,2282819-2283384	AT5G07270.1  CDS  gene_syn T28J14.210, T28J14_210  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function ubiquitin-protein ligase activity|GO:0004842|15644464|IDA  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XBAT32; protein binding / zinc ion binding (TAIR:AT5G57740.1); Has 44282 Blast hits to 18491 proteins in 678 species: Archae - 43; Bacteria - 2745; Metazoa - 24300; Fungi - 3186; Plants - 1469; Viruses - 375; Other Eukaryotes - 12164 (source: NCBI BLink).  protein_id AT5G07270.1p  transcript_id AT5G07270.1  protein_id AT5G07270.1p  transcript_id AT5G07270.1  
At5g07280	chr5:002285088	0.0	W/2285088-2288666	AT5G07280.1  CDS  gene_syn EMS1, EXCESS MICROSPOROCYTES1, EXS, EXTRA SPOROGENOUS CELLS, T28J14.220, T28J14_220  gene EMS1  function Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene s promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression. ems1 mutants lack the tapetum. Acts as regulator of anther cell differentiation  go_component membrane|GO:0016020|12154130|IDA  go_process microsporogenesis|GO:0009556|12154130|IMP  go_process tapetal cell fate specification|GO:0010234|12154130|IMP  go_function kinase activity|GO:0016301||ISS  go_function transmembrane receptor protein kinase activity|GO:0019199|12154130|ISS  product EMS1 (EXCESS MICROSPOROCYTES1); kinase/ transmembrane receptor protein kinase  note EXCESS MICROSPOROCYTES1 (EMS1); FUNCTIONS IN: transmembrane receptor protein kinase activity, kinase activity; INVOLVED IN: tapetal cell fate specification, microsporogenesis; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: BRL2 (BRI1-LIKE 2); ATP binding / protein serine/threonine kinase/ transmembrane receptor protein serine/threonine kinase (TAIR:AT2G01950.1); Has 190025 Blast hits to 103841 proteins in 3496 species: Archae - 115; Bacteria - 14752; Metazoa - 77083; Fungi - 7644; Plants - 66697; Viruses - 371; Other Eukaryotes - 23363 (source: NCBI BLink).  protein_id AT5G07280.1p  transcript_id AT5G07280.1  protein_id AT5G07280.1p  transcript_id AT5G07280.1  
At5g07290	chr5:002294248	0.0	W/2294248-2294325,2294423-2294651,2294729-2295117,2295231-2295389,2295487-2295600,2295691-2295836,2295956-2296038,2296134-2296532,2296853-2297510,2297608-2297692,2297799-2297867,2297974-2298153,2298357-2298491	AT5G07290.1  CDS  gene_syn AML4, ARABIDOPSIS MEI2-LIKE 4, T28J14.230, T28J14_230  gene AML4  function AML4 A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML4 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM14. AML4 is expressed during embryo development (heart and torpedo stage) and in vegetative and floral apices.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process meristem development|GO:0048507|16473967|IGI  go_function RNA binding|GO:0003723||ISS  product AML4 (ARABIDOPSIS MEI2-LIKE 4); RNA binding / nucleic acid binding / nucleotide binding  note ARABIDOPSIS MEI2-LIKE 4 (AML4); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: meristem development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), RNA recognition motif 2 (InterPro:IPR007201), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: AML1 (ARABIDOPSIS MEI2-LIKE PROTEIN 1); RNA binding / protein binding (TAIR:AT5G61960.2); Has 7075 Blast hits to 5680 proteins in 281 species: Archae - 0; Bacteria - 32; Metazoa - 4453; Fungi - 876; Plants - 978; Viruses - 0; Other Eukaryotes - 736 (source: NCBI BLink).  protein_id AT5G07290.1p  transcript_id AT5G07290.1  protein_id AT5G07290.1p  transcript_id AT5G07290.1  
At5g07300	chr5:002299996	0.0	W/2299996-2300145,2300222-2300269,2300384-2300532,2300617-2300665,2300747-2300803,2300901-2301089,2301166-2301300,2301383-2301444,2301546-2301648,2301726-2301840,2301926-2302002,2302076-2302213,2302298-2302462,2302550-2302663,2302754-2302850,2302928-2303040	AT5G07300.1  CDS  gene_syn BON2, BONZAI 2, T2I1.10, T2I1_10  gene BON2  function Encodes a copine-like protein, which is a member of a newly identified class of calcium-dependent, phospholipid binding proteins that are present in a wide range of organisms.  go_component plasma membrane|GO:0005886|17644812|IDA  go_function calcium-dependent phospholipid binding|GO:0005544||NAS  product BON2 (BONZAI 2); calcium-dependent phospholipid binding  note BONZAI 2 (BON2); FUNCTIONS IN: calcium-dependent phospholipid binding; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Copine (InterPro:IPR010734), C2 calcium-dependent membrane targeting (InterPro:IPR000008), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: BON1 (BONZAI 1); calcium-dependent phospholipid binding (TAIR:AT5G61900.3); Has 1202 Blast hits to 1087 proteins in 81 species: Archae - 0; Bacteria - 4; Metazoa - 772; Fungi - 0; Plants - 184; Viruses - 0; Other Eukaryotes - 242 (source: NCBI BLink).  protein_id AT5G07300.1p  transcript_id AT5G07300.1  protein_id AT5G07300.1p  transcript_id AT5G07300.1  
At5g07310	chr5:002305684	0.0	W/2305684-2305936,2306122-2306660	AT5G07310.1  CDS  gene_syn T2I1.20, T2I1_20  function encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor family protein (TAIR:AT5G61890.1); Has 3921 Blast hits to 3742 proteins in 202 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 3907; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT5G07310.1p  transcript_id AT5G07310.1  protein_id AT5G07310.1p  transcript_id AT5G07310.1  
At5g07315	chr5:002309512	0.0	C/2309512-2309548	AT5G07315.1  tRNA  gene_syn 67600.TRNA-TYR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT5G07315.1  
At5g07320	chr5:002310248	0.0	W/2310248-2310644,2310861-2311634,2311722-2311812,2311905-2312082	AT5G07320.1  CDS  gene_syn T2I1.30, T2I1_30  go_component mitochondrial inner membrane|GO:0005743||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function binding|GO:0005488||IEA  go_function calcium ion binding|GO:0005509||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_function calcium ion binding|GO:0005509||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: binding, calcium ion binding; INVOLVED IN: transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), Mitochondrial substrate carrier (InterPro:IPR001993), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248), Mitochondrial carrier protein (InterPro:IPR002067), EF-HAND 2 (InterPro:IPR018249), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: mitochondrial substrate carrier family protein (TAIR:AT5G61810.1); Has 25974 Blast hits to 15681 proteins in 989 species: Archae - 0; Bacteria - 9; Metazoa - 12328; Fungi - 6441; Plants - 4249; Viruses - 5; Other Eukaryotes - 2942 (source: NCBI BLink).  protein_id AT5G07320.1p  transcript_id AT5G07320.1  protein_id AT5G07320.1p  transcript_id AT5G07320.1  
At5g07322	chr5:002313119	0.0	C/2313119-2313563	AT5G07322.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G07322.1  
At5g07330	chr5:002316064	0.0	W/2316064-2316081,2316162-2316641	AT5G07330.1  CDS  gene_syn T2I1.40, T2I1_40  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63060.1); Has 18 Blast hits to 18 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G07330.1p  transcript_id AT5G07330.1  protein_id AT5G07330.1p  transcript_id AT5G07330.1  
At5g07340	chr5:002317300	0.0	W/2317300-2317386,2317474-2317543,2317776-2318911,2318990-2319061,2319142-2319252,2319336-2319458	AT5G07340.1  CDS  gene_syn T2I1.50, T2I1_50  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process protein folding|GO:0006457||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  product calnexin, putative  note calnexin, putative; FUNCTIONS IN: unfolded protein binding, calcium ion binding; INVOLVED IN: protein folding; LOCATED IN: endoplasmic reticulum, plasma membrane, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Calreticulin/calnexin, P (InterPro:IPR009033), Calreticulin/calnexin (InterPro:IPR001580), Calreticulin/calnexin, conserved site (InterPro:IPR018124), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320); BEST Arabidopsis thaliana protein match is: calnexin 1 (CNX1) (TAIR:AT5G61790.1); Has 1287 Blast hits to 1216 proteins in 289 species: Archae - 0; Bacteria - 58; Metazoa - 600; Fungi - 146; Plants - 196; Viruses - 11; Other Eukaryotes - 276 (source: NCBI BLink).  protein_id AT5G07340.1p  transcript_id AT5G07340.1  protein_id AT5G07340.1p  transcript_id AT5G07340.1  
At5g07350	chr5:002324740	0.0	C/2324740-2324892,2324470-2324544,2324266-2324382,2324081-2324188,2323795-2324001,2323488-2323697,2323297-2323404,2322846-2323016,2322569-2322766,2322129-2322491,2321791-2322021,2321519-2321707,2321355-2321438,2321065-2321259,2320609-2320986,2320344-2320532	AT5G07350.1  CDS  gene_syn T2I1.60, T2I1_60  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function nucleic acid binding|GO:0003676||IEA  go_function protein binding|GO:0005515||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function nucleic acid binding|GO:0003676||ISS  go_function nuclease activity|GO:0004518||ISS  product tudor domain-containing protein / nuclease family protein  note tudor domain-containing protein / nuclease family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, protein binding, nuclease activity, nucleic acid binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cell wall, plasma membrane, chloroplast; EXPRESSED IN: male gametophyte, guard cell, cultured cell, pollen tube, leaf; EXPRESSED DURING: M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: Staphylococcal nuclease (SNase-like) (InterPro:IPR006021), RNA-induced silencing complex, nuclease component Tudor-SN (InterPro:IPR016685), Staphylococcal nuclease (SNase-like), OB-fold (InterPro:IPR016071), Tudor subgroup (InterPro:IPR018351), Tudor (InterPro:IPR002999), Maternal tudor protein (InterPro:IPR008191); BEST Arabidopsis thaliana protein match is: tudor domain-containing protein / nuclease family protein (TAIR:AT5G61780.1); Has 955 Blast hits to 602 proteins in 146 species: Archae - 2; Bacteria - 14; Metazoa - 631; Fungi - 127; Plants - 53; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).  protein_id AT5G07350.1p  transcript_id AT5G07350.1  protein_id AT5G07350.1p  transcript_id AT5G07350.1  
At5g07350	chr5:002324740	0.0	C/2324740-2324892,2324470-2324544,2324266-2324382,2324081-2324188,2323795-2324001,2323488-2323697,2323297-2323404,2322846-2323016,2322569-2322766,2322129-2322491,2321791-2322021,2321519-2321707,2321355-2321438,2321065-2321259,2320609-2320986,2320355-2320532,2320116-2320157,2319790-2319947	AT5G07350.2  CDS  gene_syn T2I1.60, T2I1_60  go_function nucleic acid binding|GO:0003676||IEA  go_function protein binding|GO:0005515||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function nucleic acid binding|GO:0003676||ISS  go_function nuclease activity|GO:0004518||ISS  product tudor domain-containing protein / nuclease family protein  note tudor domain-containing protein / nuclease family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, protein binding, nucleic acid binding, nuclease activity; EXPRESSED IN: male gametophyte, guard cell, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Staphylococcal nuclease (SNase-like) (InterPro:IPR006021), RNA-induced silencing complex, nuclease component Tudor-SN (InterPro:IPR016685), Staphylococcal nuclease (SNase-like), OB-fold (InterPro:IPR016071), Tudor subgroup (InterPro:IPR018351), Maternal tudor protein (InterPro:IPR008191), Tudor (InterPro:IPR002999); BEST Arabidopsis thaliana protein match is: tudor domain-containing protein / nuclease family protein (TAIR:AT5G61780.1).  protein_id AT5G07350.2p  transcript_id AT5G07350.2  protein_id AT5G07350.2p  transcript_id AT5G07350.2  
At5g07360	chr5:002329725	0.0	C/2329725-2330011,2329540-2329639,2329100-2329324,2328938-2329020,2328764-2328864,2328525-2328648,2328273-2328427,2328030-2328145,2327765-2327935,2327463-2327687,2327136-2327369,2326925-2327062	AT5G07360.2  CDS  gene_syn T2I1.70, T2I1_70  go_function carbon-nitrogen ligase activity, with glutamine as amido-N-donor|GO:0016884||IEA  go_function amidase activity|GO:0004040||ISS  product amidase family protein  note amidase family protein; FUNCTIONS IN: amidase activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amidase signature enzyme (InterPro:IPR000120); BEST Arabidopsis thaliana protein match is: glutamyl-tRNA(Gln) amidotransferase, putative (TAIR:AT3G25660.1); Has 13430 Blast hits to 13422 proteins in 1425 species: Archae - 141; Bacteria - 6070; Metazoa - 491; Fungi - 856; Plants - 207; Viruses - 0; Other Eukaryotes - 5665 (source: NCBI BLink).  protein_id AT5G07360.2p  transcript_id AT5G07360.2  protein_id AT5G07360.2p  transcript_id AT5G07360.2  
At5g07360	chr5:002329725	0.0	C/2329725-2330011,2329540-2329639,2329100-2329324,2328938-2329020,2328764-2328864,2328525-2328648,2328273-2328427,2328030-2328166,2327765-2327935,2327463-2327687,2327136-2327369,2326925-2327062	AT5G07360.1  CDS  gene_syn T2I1.70, T2I1_70  go_process acrylonitrile catabolic process|GO:0019256||IEA  go_process aldoxime metabolic process|GO:0019330||IEA  go_function carbon-nitrogen ligase activity, with glutamine as amido-N-donor|GO:0016884||IEA  go_function amidase activity|GO:0004040||ISS  product amidase family protein  note amidase family protein; FUNCTIONS IN: amidase activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor; INVOLVED IN: acrylonitrile catabolic process, aldoxime metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amidase signature enzyme (InterPro:IPR000120); BEST Arabidopsis thaliana protein match is: glutamyl-tRNA(Gln) amidotransferase, putative (TAIR:AT3G25660.1); Has 13555 Blast hits to 13547 proteins in 1426 species: Archae - 141; Bacteria - 6093; Metazoa - 496; Fungi - 872; Plants - 207; Viruses - 0; Other Eukaryotes - 5746 (source: NCBI BLink).  protein_id AT5G07360.1p  transcript_id AT5G07360.1  protein_id AT5G07360.1p  transcript_id AT5G07360.1  
At5g07370	chr5:002331251	0.0	W/2331251-2332111	AT5G07370.1  CDS  gene_syn ATIPK2A, INOSITOL POLYPHOSPHATE KINASE 2 ALPHA, IPK2a, T2I1.80, T2I1_80  gene IPK2a  function Encodes inositol polyphosphate kinase, which phosphorylates inositol 1,4,5-triphosphate and inositol 1,3,4,5-tetrakisphosphate to generate inositol 1,3,4,5,6-pentakisphosphate  go_component nucleus|GO:0005634|15618435|IDA  go_component plasma membrane|GO:0005886|15618435|IDA  go_process pollen germination|GO:0009846|15618435|IMP  go_process pollen tube growth|GO:0009860|15618435|IMP  go_function inositol trisphosphate 6-kinase activity|GO:0000823|12226109|IDA  go_function inositol or phosphatidylinositol kinase activity|GO:0004428||ISS  product IPK2a (INOSITOL POLYPHOSPHATE KINASE 2 ALPHA); inositol or phosphatidylinositol kinase/ inositol trisphosphate 6-kinase  note INOSITOL POLYPHOSPHATE KINASE 2 ALPHA (IPK2a); FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, inositol trisphosphate 6-kinase activity; INVOLVED IN: pollen germination, pollen tube growth; LOCATED IN: plasma membrane, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate kinase (InterPro:IPR005522); BEST Arabidopsis thaliana protein match is: ATIPK2BETA; inositol or phosphatidylinositol kinase/ inositol trisphosphate 6-kinase (TAIR:AT5G61760.1); Has 626 Blast hits to 626 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 338; Fungi - 153; Plants - 42; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT5G07370.1p  transcript_id AT5G07370.1  protein_id AT5G07370.1p  transcript_id AT5G07370.1  
At5g07370	chr5:002331251	0.0	W/2331251-2332111	AT5G07370.2  CDS  gene_syn ATIPK2A, INOSITOL POLYPHOSPHATE KINASE 2 ALPHA, IPK2a, T2I1.80, T2I1_80  gene IPK2a  function Encodes inositol polyphosphate kinase, which phosphorylates inositol 1,4,5-triphosphate and inositol 1,3,4,5-tetrakisphosphate to generate inositol 1,3,4,5,6-pentakisphosphate  go_component nucleus|GO:0005634|15618435|IDA  go_component plasma membrane|GO:0005886|15618435|IDA  go_process pollen germination|GO:0009846|15618435|IMP  go_process pollen tube growth|GO:0009860|15618435|IMP  go_function inositol trisphosphate 6-kinase activity|GO:0000823|12226109|IDA  go_function inositol or phosphatidylinositol kinase activity|GO:0004428||ISS  product IPK2a (INOSITOL POLYPHOSPHATE KINASE 2 ALPHA); inositol or phosphatidylinositol kinase/ inositol trisphosphate 6-kinase  note INOSITOL POLYPHOSPHATE KINASE 2 ALPHA (IPK2a); FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, inositol trisphosphate 6-kinase activity; INVOLVED IN: pollen germination, pollen tube growth; LOCATED IN: plasma membrane, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate kinase (InterPro:IPR005522); BEST Arabidopsis thaliana protein match is: ATIPK2BETA; inositol or phosphatidylinositol kinase/ inositol trisphosphate 6-kinase (TAIR:AT5G61760.1); Has 626 Blast hits to 626 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 338; Fungi - 153; Plants - 42; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT5G07370.2p  transcript_id AT5G07370.2  protein_id AT5G07370.2p  transcript_id AT5G07370.2  
At5g07370	chr5:002331251	0.0	W/2331251-2332111	AT5G07370.3  CDS  gene_syn ATIPK2A, INOSITOL POLYPHOSPHATE KINASE 2 ALPHA, IPK2a, T2I1.80, T2I1_80  gene IPK2a  function Encodes inositol polyphosphate kinase, which phosphorylates inositol 1,4,5-triphosphate and inositol 1,3,4,5-tetrakisphosphate to generate inositol 1,3,4,5,6-pentakisphosphate  go_component nucleus|GO:0005634|15618435|IDA  go_component plasma membrane|GO:0005886|15618435|IDA  go_process pollen germination|GO:0009846|15618435|IMP  go_process pollen tube growth|GO:0009860|15618435|IMP  go_function inositol trisphosphate 6-kinase activity|GO:0000823|12226109|IDA  go_function inositol or phosphatidylinositol kinase activity|GO:0004428||ISS  product IPK2a (INOSITOL POLYPHOSPHATE KINASE 2 ALPHA); inositol or phosphatidylinositol kinase/ inositol trisphosphate 6-kinase  note INOSITOL POLYPHOSPHATE KINASE 2 ALPHA (IPK2a); FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, inositol trisphosphate 6-kinase activity; INVOLVED IN: pollen germination, pollen tube growth; LOCATED IN: plasma membrane, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate kinase (InterPro:IPR005522); BEST Arabidopsis thaliana protein match is: ATIPK2BETA; inositol or phosphatidylinositol kinase/ inositol trisphosphate 6-kinase (TAIR:AT5G61760.1); Has 626 Blast hits to 626 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 338; Fungi - 153; Plants - 42; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT5G07370.3p  transcript_id AT5G07370.3  protein_id AT5G07370.3p  transcript_id AT5G07370.3  
At5g07370	chr5:002331251	0.0	W/2331251-2332111	AT5G07370.4  CDS  gene_syn ATIPK2A, INOSITOL POLYPHOSPHATE KINASE 2 ALPHA, IPK2a, T2I1.80, T2I1_80  gene IPK2a  function Encodes inositol polyphosphate kinase, which phosphorylates inositol 1,4,5-triphosphate and inositol 1,3,4,5-tetrakisphosphate to generate inositol 1,3,4,5,6-pentakisphosphate  go_component nucleus|GO:0005634|15618435|IDA  go_component plasma membrane|GO:0005886|15618435|IDA  go_process pollen germination|GO:0009846|15618435|IMP  go_process pollen tube growth|GO:0009860|15618435|IMP  go_function inositol trisphosphate 6-kinase activity|GO:0000823|12226109|IDA  go_function inositol or phosphatidylinositol kinase activity|GO:0004428||ISS  product IPK2a (INOSITOL POLYPHOSPHATE KINASE 2 ALPHA); inositol or phosphatidylinositol kinase/ inositol trisphosphate 6-kinase  note INOSITOL POLYPHOSPHATE KINASE 2 ALPHA (IPK2a); FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, inositol trisphosphate 6-kinase activity; INVOLVED IN: pollen germination, pollen tube growth; LOCATED IN: plasma membrane, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate kinase (InterPro:IPR005522); BEST Arabidopsis thaliana protein match is: ATIPK2BETA; inositol or phosphatidylinositol kinase/ inositol trisphosphate 6-kinase (TAIR:AT5G61760.1); Has 626 Blast hits to 626 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 338; Fungi - 153; Plants - 42; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT5G07370.4p  transcript_id AT5G07370.4  protein_id AT5G07370.4p  transcript_id AT5G07370.4  
At5g07380	chr5:002332527	0.0	W/2332527-2332595,2332826-2332936,2333017-2333143,2333231-2333364,2333441-2333585,2333751-2333929,2334083-2334323,2334421-2334507,2334580-2334725,2334869-2334976,2335062-2335150,2335244-2335736	AT5G07380.3  CDS  gene_syn T2I1.90, T2I1_90  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 50 Blast hits to 48 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 34; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G07380.3p  transcript_id AT5G07380.3  protein_id AT5G07380.3p  transcript_id AT5G07380.3  
At5g07380	chr5:002332527	0.0	W/2332527-2332595,2332826-2332936,2333020-2333143,2333231-2333364,2333441-2333585,2333751-2333929,2334083-2334323,2334421-2334507,2334580-2334725,2334869-2334976,2335062-2335150,2335244-2335736	AT5G07380.1  CDS  gene_syn T2I1.90, T2I1_90  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 50 Blast hits to 48 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 34; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G07380.1p  transcript_id AT5G07380.1  protein_id AT5G07380.1p  transcript_id AT5G07380.1  
At5g07380	chr5:002332527	0.0	W/2332527-2332595,2332826-2332936,2333020-2333143,2333231-2333364,2333441-2333585,2333751-2333929,2334083-2334323,2334421-2334507,2334580-2334725,2334869-2334976,2335062-2335150,2335244-2335736	AT5G07380.2  CDS  gene_syn T2I1.90, T2I1_90  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 50 Blast hits to 48 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 34; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G07380.2p  transcript_id AT5G07380.2  protein_id AT5G07380.2p  transcript_id AT5G07380.2  
At5g07390	chr5:002339191	0.0	C/2339191-2339728,2338953-2339109,2338827-2338875,2338623-2338736,2338080-2338505,2337613-2337999,2337438-2337533,2337232-2337347,2337049-2337151,2336894-2336967,2336255-2336793,2336063-2336172	AT5G07390.1  CDS  gene_syn ATRBOHA, T2I1.100, T2I1_100, respiratory burst oxidase homolog A  gene ATRBOHA  go_component intrinsic to plasma membrane|GO:0031226|9490748|IDA  go_process defense response|GO:0006952|9628030|TAS  go_function calcium ion binding|GO:0005509|9490748|IDA  product ATRBOHA (respiratory burst oxidase homolog A); calcium ion binding  note respiratory burst oxidase homolog A (ATRBOHA); FUNCTIONS IN: calcium ion binding; INVOLVED IN: defense response; LOCATED IN: intrinsic to plasma membrane; EXPRESSED IN: seedling, root, leaf; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-HAND 1 (InterPro:IPR018247), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), NADPH oxidase Respiratory burst (InterPro:IPR013623), Ferric reductase, NAD binding (InterPro:IPR013121), EF-HAND 2 (InterPro:IPR018249), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: RHD2 (ROOT HAIR DEFECTIVE 2); NAD(P)H oxidase (TAIR:AT5G51060.1); Has 1368 Blast hits to 1284 proteins in 192 species: Archae - 6; Bacteria - 55; Metazoa - 580; Fungi - 344; Plants - 264; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT5G07390.1p  transcript_id AT5G07390.1  protein_id AT5G07390.1p  transcript_id AT5G07390.1  
At5g07400	chr5:002340814	0.0	W/2340814-2342045,2342164-2342298,2342393-2342537,2342702-2343001,2343193-2343433,2343524-2343690,2343774-2343884,2343993-2344044,2344126-2344235,2344321-2344449,2344586-2344675,2344779-2345321	AT5G07400.1  CDS  gene_syn T2I1.110, T2I1_110  go_component nucleus|GO:0005634||IEA  go_process DNA repair|GO:0006281||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function phosphoric diester hydrolase activity|GO:0008081||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides|GO:0016818||IEA  product forkhead-associated domain-containing protein / FHA domain-containing protein  note forkhead-associated domain-containing protein / FHA domain-containing protein; FUNCTIONS IN: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, phosphoric diester hydrolase activity, zinc ion binding, nucleic acid binding; INVOLVED IN: DNA repair; LOCATED IN: nucleus; EXPRESSED IN: sperm cell, seed; EXPRESSED DURING: F mature embryo stage; CONTAINS InterPro DOMAIN/s: Tyrosyl-DNA phosphodiesterase (InterPro:IPR010347), SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (InterPro:IPR000253), HIP116, Rad5p N-terminal (InterPro:IPR014905); BEST Arabidopsis thaliana protein match is: tyrosyl-DNA phosphodiesterase-related (TAIR:AT5G15170.1); Has 327 Blast hits to 296 proteins in 84 species: Archae - 0; Bacteria - 2; Metazoa - 187; Fungi - 58; Plants - 27; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT5G07400.1p  transcript_id AT5G07400.1  protein_id AT5G07400.1p  transcript_id AT5G07400.1  
At5g07410	chr5:002345852	0.0	W/2345852-2346055,2346145-2346420,2346508-2346714,2346788-2347026,2347117-2347276	AT5G07410.1  CDS  gene_syn T2I1.120, T2I1_120  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: PPME1; pectinesterase (TAIR:AT1G69940.1); Has 1207 Blast hits to 1171 proteins in 173 species: Archae - 0; Bacteria - 243; Metazoa - 1; Fungi - 134; Plants - 829; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G07410.1p  transcript_id AT5G07410.1  protein_id AT5G07410.1p  transcript_id AT5G07410.1  
At5g07420	chr5:002349547	0.0	W/2349547-2349750,2350057-2350335,2350424-2350627,2350725-2350963,2351207-2351366	AT5G07420.1  CDS  gene_syn T2I1.130, T2I1_130  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT5G07430.1); Has 1222 Blast hits to 1188 proteins in 176 species: Archae - 0; Bacteria - 256; Metazoa - 1; Fungi - 133; Plants - 832; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G07420.1p  transcript_id AT5G07420.1  protein_id AT5G07420.1p  transcript_id AT5G07420.1  
At5g07430	chr5:002352549	0.0	W/2352549-2352752,2352895-2353173,2353264-2353467,2353570-2353808,2353910-2354069	AT5G07430.1  CDS  gene_syn T2I1.140, T2I1_140  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT5G07420.1); Has 1223 Blast hits to 1194 proteins in 174 species: Archae - 0; Bacteria - 259; Metazoa - 1; Fungi - 128; Plants - 835; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G07430.1p  transcript_id AT5G07430.1  protein_id AT5G07430.1p  transcript_id AT5G07430.1  
At5g07440	chr5:002356153	0.0	W/2356153-2356260,2356362-2356475,2356587-2356883,2357043-2357159,2357253-2357503,2357589-2357664,2357740-2358012	AT5G07440.1  CDS  gene_syn GDH2, GLUTAMATE DEHYDROGENASE 2, T2I1.150, T2I1_150  gene GDH2  function Encodes the beta-subunit of the glutamate dehydrogenase. The enzyme is almost exclusively found in the mitochondria of stem and leaf companion cells.  go_component mitochondrion|GO:0005739|17137349|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|9112779|IDA  go_function glutamate dehydrogenase activity|GO:0004352|18467460|IDA  go_function glutamate dehydrogenase [NAD(P)+] activity|GO:0004353|9112779|IDA  go_function oxidoreductase activity|GO:0016491||ISS  product GDH2 (GLUTAMATE DEHYDROGENASE 2); ATP binding / glutamate dehydrogenase [NAD(P)+]/ glutamate dehydrogenase/ oxidoreductase  note GLUTAMATE DEHYDROGENASE 2 (GDH2); FUNCTIONS IN: oxidoreductase activity, glutamate dehydrogenase [NAD(P)+] activity, glutamate dehydrogenase activity, ATP binding; INVOLVED IN: response to cadmium ion, response to salt stress; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Glutamate/phenylalanine/leucine/valine dehydrogenase (InterPro:IPR006095), Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal (InterPro:IPR006096), Glutamate dehydrogenase (InterPro:IPR014362), NAD(P)-binding (InterPro:IPR016040), Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation region (InterPro:IPR006097); BEST Arabidopsis thaliana protein match is: GDH1 (GLUTAMATE DEHYDROGENASE 1); ATP binding / glutamate dehydrogenase [NAD(P)+]/ oxidoreductase (TAIR:AT5G18170.1); Has 5757 Blast hits to 5752 proteins in 1260 species: Archae - 189; Bacteria - 2757; Metazoa - 311; Fungi - 155; Plants - 249; Viruses - 0; Other Eukaryotes - 2096 (source: NCBI BLink).  protein_id AT5G07440.1p  transcript_id AT5G07440.1  protein_id AT5G07440.1p  transcript_id AT5G07440.1  
At5g07440	chr5:002356153	0.0	W/2356153-2356260,2356362-2356475,2356587-2356883,2357043-2357159,2357253-2357503,2357589-2357664,2357740-2358012	AT5G07440.2  CDS  gene_syn GDH2, GLUTAMATE DEHYDROGENASE 2, T2I1.150, T2I1_150  gene GDH2  function Encodes the beta-subunit of the glutamate dehydrogenase. The enzyme is almost exclusively found in the mitochondria of stem and leaf companion cells.  go_component mitochondrion|GO:0005739|17137349|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|9112779|IDA  go_function glutamate dehydrogenase activity|GO:0004352|18467460|IDA  go_function glutamate dehydrogenase [NAD(P)+] activity|GO:0004353|9112779|IDA  go_function oxidoreductase activity|GO:0016491||ISS  product GDH2 (GLUTAMATE DEHYDROGENASE 2); ATP binding / glutamate dehydrogenase [NAD(P)+]/ glutamate dehydrogenase/ oxidoreductase  note GLUTAMATE DEHYDROGENASE 2 (GDH2); FUNCTIONS IN: oxidoreductase activity, glutamate dehydrogenase [NAD(P)+] activity, glutamate dehydrogenase activity, ATP binding; INVOLVED IN: response to salt stress; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Glutamate/phenylalanine/leucine/valine dehydrogenase (InterPro:IPR006095), Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal (InterPro:IPR006096), Glutamate dehydrogenase (InterPro:IPR014362), NAD(P)-binding (InterPro:IPR016040), Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation region (InterPro:IPR006097); BEST Arabidopsis thaliana protein match is: GDH1 (GLUTAMATE DEHYDROGENASE 1); ATP binding / glutamate dehydrogenase [NAD(P)+]/ oxidoreductase (TAIR:AT5G18170.1); Has 5757 Blast hits to 5752 proteins in 1260 species: Archae - 189; Bacteria - 2757; Metazoa - 311; Fungi - 155; Plants - 249; Viruses - 0; Other Eukaryotes - 2096 (source: NCBI BLink).  protein_id AT5G07440.2p  transcript_id AT5G07440.2  protein_id AT5G07440.2p  transcript_id AT5G07440.2  
At5g07440	chr5:002356153	0.0	W/2356153-2356260,2356362-2356475,2356587-2356883,2357043-2357159,2357253-2357546	AT5G07440.3  CDS  gene_syn GDH2, GLUTAMATE DEHYDROGENASE 2, T2I1.150, T2I1_150  gene GDH2  function Encodes the beta-subunit of the glutamate dehydrogenase. The enzyme is almost exclusively found in the mitochondria of stem and leaf companion cells.  go_component mitochondrion|GO:0005739|17137349|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|9112779|IDA  go_function glutamate dehydrogenase activity|GO:0004352|18467460|IDA  go_function glutamate dehydrogenase [NAD(P)+] activity|GO:0004353|9112779|IDA  go_function oxidoreductase activity|GO:0016491||ISS  product GDH2 (GLUTAMATE DEHYDROGENASE 2); ATP binding / glutamate dehydrogenase [NAD(P)+]/ glutamate dehydrogenase/ oxidoreductase  note GLUTAMATE DEHYDROGENASE 2 (GDH2); FUNCTIONS IN: oxidoreductase activity, glutamate dehydrogenase [NAD(P)+] activity, glutamate dehydrogenase activity, ATP binding; INVOLVED IN: response to salt stress; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Glutamate/phenylalanine/leucine/valine dehydrogenase (InterPro:IPR006095), Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal (InterPro:IPR006096), NAD(P)-binding (InterPro:IPR016040), Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation region (InterPro:IPR006097); BEST Arabidopsis thaliana protein match is: GDH3 (GLUTAMATE DEHYDROGENASE 3); binding / catalytic/ oxidoreductase/ oxidoreductase, acting on the CH-NH2 group of donors, NAD or NADP as acceptor (TAIR:AT3G03910.1); Has 5259 Blast hits to 5259 proteins in 1235 species: Archae - 185; Bacteria - 2697; Metazoa - 297; Fungi - 128; Plants - 245; Viruses - 0; Other Eukaryotes - 1707 (source: NCBI BLink).  protein_id AT5G07440.3p  transcript_id AT5G07440.3  protein_id AT5G07440.3p  transcript_id AT5G07440.3  
At5g07450	chr5:002358883	0.0	C/2358883-2359253,2358418-2358697	AT5G07450.1  CDS  gene_syn CYCP4;3, T2I1.160, T2I1_160, cyclin p4;3  gene CYCP4;3  go_component cellular_component|GO:0005575||ND  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase activity|GO:0004693||ISS  product CYCP4;3 (cyclin p4;3); cyclin-dependent protein kinase  note cyclin p4;3 (CYCP4;3); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Negative regulatory factor PREG (InterPro:IPR012389), Cyclin-like (InterPro:IPR011028), Cyclin, N-terminal (InterPro:IPR006671), Cyclin-related 2 (InterPro:IPR013922), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCP4;2 (CYCLIN P4;2); cyclin-dependent protein kinase (TAIR:AT5G61650.1); Has 913 Blast hits to 913 proteins in 164 species: Archae - 0; Bacteria - 16; Metazoa - 174; Fungi - 374; Plants - 130; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).  protein_id AT5G07450.1p  transcript_id AT5G07450.1  protein_id AT5G07450.1p  transcript_id AT5G07450.1  
At5g07460	chr5:002361481	0.0	C/2361481-2361885,2360844-2361095	AT5G07460.1  CDS  gene_syn PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2, PMSR2, T2I1.170, T2I1_170  gene PMSR2  function ubiquitous enzyme that repairs oxidatively damaged proteins.  go_process protein metabolic process|GO:0019538||IEA  go_function oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor|GO:0016671||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_process protein modification process|GO:0006464||ISS  go_function peptide-methionine-(S)-S-oxide reductase activity|GO:0008113||ISS  product PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2); oxidoreductase, acting on sulfur group of donors, disulfide as acceptor / peptide-methionine-(S)-S-oxide reductase  note PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2 (PMSR2); FUNCTIONS IN: peptide-methionine-(S)-S-oxide reductase activity, oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: protein modification process, protein metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methionine sulphoxide reductase A (InterPro:IPR002569); BEST Arabidopsis thaliana protein match is: PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3); oxidoreductase, acting on sulfur group of donors, disulfide as acceptor / peptide-methionine-(S)-S-oxide reductase (TAIR:AT5G07470.1); Has 7173 Blast hits to 7171 proteins in 1356 species: Archae - 86; Bacteria - 3333; Metazoa - 162; Fungi - 91; Plants - 126; Viruses - 1; Other Eukaryotes - 3374 (source: NCBI BLink).  protein_id AT5G07460.1p  transcript_id AT5G07460.1  protein_id AT5G07460.1p  transcript_id AT5G07460.1  
At5g07470	chr5:002363930	0.0	C/2363930-2364286,2362760-2363011	AT5G07470.1  CDS  gene_syn PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3, PMSR3, T2I1.180, T2I1_180  gene PMSR3  function ubiquitous enzyme that repairs oxidatively damaged proteins  go_function oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor|GO:0016671||IEA  go_component cellular_component|GO:0005575||ND  go_process protein modification process|GO:0006464||ISS  go_process response to oxidative stress|GO:0006979||NAS  go_function peptide-methionine-(S)-S-oxide reductase activity|GO:0008113||ISS  product PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3); oxidoreductase, acting on sulfur group of donors, disulfide as acceptor / peptide-methionine-(S)-S-oxide reductase  note PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3 (PMSR3); FUNCTIONS IN: peptide-methionine-(S)-S-oxide reductase activity, oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: response to oxidative stress, protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Methionine sulphoxide reductase A (InterPro:IPR002569); BEST Arabidopsis thaliana protein match is: PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1); oxidoreductase, acting on sulfur group of donors, disulfide as acceptor / peptide-methionine-(S)-S-oxide reductase (TAIR:AT5G61640.1); Has 7171 Blast hits to 7169 proteins in 1356 species: Archae - 86; Bacteria - 3333; Metazoa - 164; Fungi - 91; Plants - 128; Viruses - 1; Other Eukaryotes - 3368 (source: NCBI BLink).  protein_id AT5G07470.1p  transcript_id AT5G07470.1  protein_id AT5G07470.1p  transcript_id AT5G07470.1  
At5g07475	chr5:002365359	0.0	C/2365359-2365536,2364827-2365227	AT5G07475.1  CDS  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function copper ion binding|GO:0005507||ISS  product plastocyanin-like domain-containing protein  note plastocyanin-like domain-containing protein; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to membrane; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: plastocyanin-like domain-containing protein (TAIR:AT3G27200.1); Has 795 Blast hits to 786 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 794; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G07475.1p  transcript_id AT5G07475.1  protein_id AT5G07475.1p  transcript_id AT5G07475.1  
At5g07480	chr5:002367167	0.0	W/2367167-2367349,2367788-2368035,2368854-2369169,2369279-2369554	AT5G07480.1  CDS  gene_syn T2I1.190, T2I1_190  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process flavonoid biosynthetic process|GO:0009813||ISS  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (TAIR:AT3G60290.1); Has 5024 Blast hits to 5010 proteins in 630 species: Archae - 0; Bacteria - 616; Metazoa - 96; Fungi - 489; Plants - 3014; Viruses - 0; Other Eukaryotes - 809 (source: NCBI BLink).  protein_id AT5G07480.1p  transcript_id AT5G07480.1  protein_id AT5G07480.1p  transcript_id AT5G07480.1  
At5g07490	chr5:002370248	0.0	W/2370248-2370482,2370789-2371003	AT5G07490.1  CDS  gene_syn T2I1.200, T2I1_200  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G61630.1); Has 23 Blast hits to 23 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G07490.1p  transcript_id AT5G07490.1  protein_id AT5G07490.1p  transcript_id AT5G07490.1  
At5g07500	chr5:002372716	0.0	W/2372716-2373453	AT5G07500.1  CDS  gene_syn PEI1, T2I1.210, T2I1_210  gene PEI1  function Encodes an embryo-specific zinc finger transcription factor required for heart-stage embryo formation.  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793|9501112|IMP  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc-mediated transcriptional activator activity|GO:0042156|9501112|ISS  product PEI1; nucleic acid binding / transcription factor/ zinc-mediated transcriptional activator  note PEI1; FUNCTIONS IN: zinc-mediated transcriptional activator activity, transcription factor activity, nucleic acid binding; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein (TAIR:AT5G58620.1); Has 457 Blast hits to 432 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 117; Fungi - 1; Plants - 203; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).  protein_id AT5G07500.1p  transcript_id AT5G07500.1  protein_id AT5G07500.1p  transcript_id AT5G07500.1  
At5g07505	chr5:002374053	0.0	W/2374053-2377382	AT5G07505.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 4.7e-41 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At5g07510	chr5:002378513	0.0	C/2378513-2378763,2377858-2378164	AT5G07510.3  CDS  gene_syn ATGRP-4, ATGRP14, GLYCINE-RICH PROTEIN 14, GLYCINE-RICH PROTEIN 4, GRP-4, GRP14, T2I1.220, T2I1_220  gene GRP14  function encodes a glycine-rich protein that is expressed in low abundance in stems and leaves, and very low abundance in flowers.  go_component extracellular region|GO:0005576|11431566|IDA  go_component membrane|GO:0016020||ISS  go_process lipid storage|GO:0019915||ISS  go_process sexual reproduction|GO:0019953|11431566|IMP  go_function lipid binding|GO:0008289|11431566|ISS  go_function nutrient reservoir activity|GO:0045735||ISS  product GRP14; lipid binding / nutrient reservoir  note GRP14; FUNCTIONS IN: lipid binding, nutrient reservoir activity; INVOLVED IN: sexual reproduction, lipid storage; LOCATED IN: extracellular region, membrane; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136); Has 28267 Blast hits to 9904 proteins in 813 species: Archae - 24; Bacteria - 13033; Metazoa - 8007; Fungi - 1185; Plants - 3349; Viruses - 282; Other Eukaryotes - 2387 (source: NCBI BLink).  protein_id AT5G07510.3p  transcript_id AT5G07510.3  protein_id AT5G07510.3p  transcript_id AT5G07510.3  
At5g07510	chr5:002378513	0.0	C/2378513-2378763,2377858-2378188	AT5G07510.1  CDS  gene_syn ATGRP-4, ATGRP14, GLYCINE-RICH PROTEIN 14, GLYCINE-RICH PROTEIN 4, GRP-4, GRP14, T2I1.220, T2I1_220  gene GRP14  function encodes a glycine-rich protein that is expressed in low abundance in stems and leaves, and very low abundance in flowers.  go_component extracellular region|GO:0005576|11431566|IDA  go_component membrane|GO:0016020||ISS  go_process lipid storage|GO:0019915||ISS  go_process sexual reproduction|GO:0019953|11431566|IMP  go_function lipid binding|GO:0008289|11431566|ISS  go_function nutrient reservoir activity|GO:0045735||ISS  product GRP14; lipid binding / nutrient reservoir  note GRP14; FUNCTIONS IN: lipid binding, nutrient reservoir activity; INVOLVED IN: sexual reproduction, lipid storage; LOCATED IN: extracellular region, membrane; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136); Has 26791 Blast hits to 9710 proteins in 807 species: Archae - 17; Bacteria - 12050; Metazoa - 7730; Fungi - 1190; Plants - 3297; Viruses - 243; Other Eukaryotes - 2264 (source: NCBI BLink).  protein_id AT5G07510.1p  transcript_id AT5G07510.1  protein_id AT5G07510.1p  transcript_id AT5G07510.1  
At5g07510	chr5:002378513	0.0	C/2378513-2378763,2378169-2378188,2377858-2378132	AT5G07510.2  CDS  gene_syn ATGRP-4, ATGRP14, GLYCINE-RICH PROTEIN 14, GLYCINE-RICH PROTEIN 4, GRP-4, GRP14, T2I1.220, T2I1_220  gene GRP14  function encodes a glycine-rich protein that is expressed in low abundance in stems and leaves, and very low abundance in flowers.  go_component extracellular region|GO:0005576|11431566|IDA  go_component membrane|GO:0016020||ISS  go_process lipid storage|GO:0019915||ISS  go_process sexual reproduction|GO:0019953|11431566|IMP  go_function lipid binding|GO:0008289|11431566|ISS  go_function nutrient reservoir activity|GO:0045735||ISS  product GRP14; lipid binding / nutrient reservoir  note GRP14; FUNCTIONS IN: lipid binding, nutrient reservoir activity; INVOLVED IN: sexual reproduction, lipid storage; LOCATED IN: extracellular region, membrane; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136); Has 20174 Blast hits to 7719 proteins in 713 species: Archae - 16; Bacteria - 10073; Metazoa - 5202; Fungi - 719; Plants - 2337; Viruses - 231; Other Eukaryotes - 1596 (source: NCBI BLink).  protein_id AT5G07510.2p  transcript_id AT5G07510.2  protein_id AT5G07510.2p  transcript_id AT5G07510.2  
At5g07520	chr5:002380986	0.0	C/2380986-2381230,2380208-2380649	AT5G07520.1  CDS  gene_syn ATGRP-8, ATGRP18, GLYCINE-RICH PROTEIN 18, GRP18, T2I1.230, T2I1_230  gene GRP18  function encodes a glycine-rich protein that is expressed only in flowers during a specific developmental stage (flower stage 12).  go_component extracellular region|GO:0005576|11431566|IDA  go_component membrane|GO:0016020||ISS  go_process lipid storage|GO:0019915||ISS  go_process sexual reproduction|GO:0019953|11431566|IMP  go_function lipid binding|GO:0008289|11431566|ISS  go_function nutrient reservoir activity|GO:0045735||ISS  product GRP18 (GLYCINE-RICH PROTEIN 18); lipid binding / nutrient reservoir  note GLYCINE-RICH PROTEIN 18 (GRP18); FUNCTIONS IN: lipid binding, nutrient reservoir activity; INVOLVED IN: sexual reproduction, lipid storage; LOCATED IN: extracellular region, membrane; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136); BEST Arabidopsis thaliana protein match is: oleosin / glycine-rich protein (TAIR:AT5G07600.1); Has 33672 Blast hits to 11599 proteins in 856 species: Archae - 41; Bacteria - 15930; Metazoa - 8259; Fungi - 1256; Plants - 2823; Viruses - 403; Other Eukaryotes - 4960 (source: NCBI BLink).  protein_id AT5G07520.1p  transcript_id AT5G07520.1  protein_id AT5G07520.1p  transcript_id AT5G07520.1  
At5g07530	chr5:002384077	0.0	C/2384077-2384495,2382678-2383890	AT5G07530.1  CDS  gene_syn ARABIDOPSIS THALIANA GLYCINE RICH PROTEIN 17, ARABIDOPSIS THALIANA GLYCINE RICH PROTEIN 7, ATGRP-7, ATGRP17, GLYCINE RICH PROTEIN 17, GRP17, T2I1.240, T2I1_240  gene GRP17  function encodes a glycine-rich protein that has oleosin domain and is expressed specifically during flower stages 10 to 12. Protein is found on mature pollen coat.  go_component extracellular region|GO:0005576|11431566|IDA  go_component membrane|GO:0016020||ISS  go_component extracellular matrix|GO:0031012|11431566|IDA  go_process pollen hydration|GO:0009859|10655594|IMP  go_process lipid storage|GO:0019915||ISS  go_process sexual reproduction|GO:0019953|11431566|IMP  go_function lipid binding|GO:0008289|11431566|ISS  product GRP17 (GLYCINE RICH PROTEIN 17); lipid binding  note GLYCINE RICH PROTEIN 17 (GRP17); FUNCTIONS IN: lipid binding; INVOLVED IN: sexual reproduction, lipid storage, pollen hydration; LOCATED IN: extracellular matrix, extracellular region, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136); BEST Arabidopsis thaliana protein match is: GRP16 (GLYCINE-RICH PROTEIN 16); lipid binding / nutrient reservoir (TAIR:AT5G07540.2); Has 97429 Blast hits to 29856 proteins in 1553 species: Archae - 225; Bacteria - 21753; Metazoa - 33686; Fungi - 7210; Plants - 10026; Viruses - 1516; Other Eukaryotes - 23013 (source: NCBI BLink).  protein_id AT5G07530.1p  transcript_id AT5G07530.1  protein_id AT5G07530.1p  transcript_id AT5G07530.1  
At5g07530	chr5:002384077	0.0	C/2384077-2384495,2382908-2383890,2382629-2382765	AT5G07530.2  CDS  gene_syn ARABIDOPSIS THALIANA GLYCINE RICH PROTEIN 17, ARABIDOPSIS THALIANA GLYCINE RICH PROTEIN 7, ATGRP-7, ATGRP17, GLYCINE RICH PROTEIN 17, GRP17, T2I1.240, T2I1_240  gene GRP17  function encodes a glycine-rich protein that has oleosin domain and is expressed specifically during flower stages 10 to 12. Protein is found on mature pollen coat.  go_component extracellular region|GO:0005576|11431566|IDA  go_component membrane|GO:0016020||ISS  go_component extracellular matrix|GO:0031012|11431566|IDA  go_process pollen hydration|GO:0009859|10655594|IMP  go_process lipid storage|GO:0019915||ISS  go_process sexual reproduction|GO:0019953|11431566|IMP  go_function lipid binding|GO:0008289|11431566|ISS  product GRP17 (GLYCINE RICH PROTEIN 17); lipid binding  note GLYCINE RICH PROTEIN 17 (GRP17); FUNCTIONS IN: lipid binding; INVOLVED IN: sexual reproduction, lipid storage, pollen hydration; LOCATED IN: extracellular matrix, extracellular region, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136); BEST Arabidopsis thaliana protein match is: GRP16 (GLYCINE-RICH PROTEIN 16); lipid binding / nutrient reservoir (TAIR:AT5G07540.2); Has 2165 Blast hits to 1885 proteins in 261 species: Archae - 6; Bacteria - 478; Metazoa - 876; Fungi - 115; Plants - 457; Viruses - 22; Other Eukaryotes - 211 (source: NCBI BLink).  protein_id AT5G07530.2p  transcript_id AT5G07530.2  protein_id AT5G07530.2p  transcript_id AT5G07530.2  
At5g07540	chr5:002386950	0.0	C/2386950-2387206,2386212-2386689	AT5G07540.1  CDS  gene_syn ATGRP-6, ATGRP16, GLYCINE-RICH PROTEIN 16, GRP16, T2I1.250, T2I1_250  gene GRP16  function encodes a glycine-rich protein that is expressed only in flowers during a specific developmental stage (flower stages 11 and 12).  go_component extracellular region|GO:0005576|11431566|IDA  go_component membrane|GO:0016020||ISS  go_process lipid storage|GO:0019915||ISS  go_process sexual reproduction|GO:0019953|11431566|IMP  go_function lipid binding|GO:0008289|11431566|ISS  go_function nutrient reservoir activity|GO:0045735||ISS  product GRP16 (GLYCINE-RICH PROTEIN 16); lipid binding / nutrient reservoir  note GLYCINE-RICH PROTEIN 16 (GRP16); FUNCTIONS IN: lipid binding, nutrient reservoir activity; INVOLVED IN: sexual reproduction, lipid storage; LOCATED IN: extracellular region, membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136); BEST Arabidopsis thaliana protein match is: GRP19 (GLYCINE-RICH PROTEIN 19); lipid binding (TAIR:AT5G07550.1); Has 179165 Blast hits to 43517 proteins in 1914 species: Archae - 402; Bacteria - 41495; Metazoa - 76814; Fungi - 10110; Plants - 12718; Viruses - 2495; Other Eukaryotes - 35131 (source: NCBI BLink).  protein_id AT5G07540.1p  transcript_id AT5G07540.1  protein_id AT5G07540.1p  transcript_id AT5G07540.1  
At5g07540	chr5:002386950	0.0	C/2386950-2387206,2386459-2386689,2386327-2386411	AT5G07540.2  CDS  gene_syn ATGRP-6, ATGRP16, GLYCINE-RICH PROTEIN 16, GRP16, T2I1.250, T2I1_250  gene GRP16  function encodes a glycine-rich protein that is expressed only in flowers during a specific developmental stage (flower stages 11 and 12).  go_component extracellular region|GO:0005576|11431566|IDA  go_component membrane|GO:0016020||ISS  go_process lipid storage|GO:0019915||ISS  go_process sexual reproduction|GO:0019953|11431566|IMP  go_function lipid binding|GO:0008289|11431566|ISS  go_function nutrient reservoir activity|GO:0045735||ISS  product GRP16 (GLYCINE-RICH PROTEIN 16); lipid binding / nutrient reservoir  note GLYCINE-RICH PROTEIN 16 (GRP16); FUNCTIONS IN: lipid binding, nutrient reservoir activity; INVOLVED IN: sexual reproduction, lipid storage; LOCATED IN: extracellular region, membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136); BEST Arabidopsis thaliana protein match is: GRP19 (GLYCINE-RICH PROTEIN 19); lipid binding (TAIR:AT5G07550.1); Has 19357 Blast hits to 7001 proteins in 749 species: Archae - 41; Bacteria - 5841; Metazoa - 5442; Fungi - 1229; Plants - 3267; Viruses - 390; Other Eukaryotes - 3147 (source: NCBI BLink).  protein_id AT5G07540.2p  transcript_id AT5G07540.2  protein_id AT5G07540.2p  transcript_id AT5G07540.2  
At5g07550	chr5:002388949	0.0	C/2388949-2389184,2388574-2388658	AT5G07550.1  CDS  gene_syn ATGRP19, GLYCINE-RICH PROTEIN 19, GRP19, T2I1.260, T2I1_260  gene GRP19  function member of Oleosin-like protein family  go_component extracellular region|GO:0005576|11431566|IDA  go_component membrane|GO:0016020||ISS  go_process lipid storage|GO:0019915||ISS  go_process sexual reproduction|GO:0019953|11431566|IMP  go_function lipid binding|GO:0008289|11431566|ISS  product GRP19 (GLYCINE-RICH PROTEIN 19); lipid binding  note GLYCINE-RICH PROTEIN 19 (GRP19); FUNCTIONS IN: lipid binding; INVOLVED IN: sexual reproduction, lipid storage; LOCATED IN: extracellular region, membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136); BEST Arabidopsis thaliana protein match is: GRP20 (GLYCINE-RICH PROTEIN 20); lipid binding / nutrient reservoir (TAIR:AT5G07560.1); Has 377 Blast hits to 377 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 377; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G07550.1p  transcript_id AT5G07550.1  protein_id AT5G07550.1p  transcript_id AT5G07550.1  
At5g07550	chr5:002388949	0.0	C/2388949-2389184,2388596-2388647	AT5G07550.2  CDS  gene_syn ATGRP19, GLYCINE-RICH PROTEIN 19, GRP19, T2I1.260, T2I1_260  gene GRP19  function member of Oleosin-like protein family  go_component extracellular region|GO:0005576|11431566|IDA  go_component membrane|GO:0016020||ISS  go_process lipid storage|GO:0019915||ISS  go_process sexual reproduction|GO:0019953|11431566|IMP  go_function lipid binding|GO:0008289|11431566|ISS  product GRP19 (GLYCINE-RICH PROTEIN 19); lipid binding  note GLYCINE-RICH PROTEIN 19 (GRP19); FUNCTIONS IN: lipid binding; INVOLVED IN: sexual reproduction, lipid storage; LOCATED IN: extracellular region, membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136); BEST Arabidopsis thaliana protein match is: GRP17 (GLYCINE RICH PROTEIN 17); lipid binding (TAIR:AT5G07530.2); Has 376 Blast hits to 376 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 376; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G07550.2p  transcript_id AT5G07550.2  protein_id AT5G07550.2p  transcript_id AT5G07550.2  
At5g07550	chr5:002389010	0.0	C/2389010-2389184,2388618-2388658	AT5G07550.3  CDS  gene_syn ATGRP19, GLYCINE-RICH PROTEIN 19, GRP19, T2I1.260, T2I1_260  gene GRP19  function member of Oleosin-like protein family  go_component extracellular region|GO:0005576|11431566|IDA  go_component membrane|GO:0016020||ISS  go_process lipid storage|GO:0019915||ISS  go_process sexual reproduction|GO:0019953|11431566|IMP  go_function lipid binding|GO:0008289|11431566|ISS  product GRP19 (GLYCINE-RICH PROTEIN 19); lipid binding  note GLYCINE-RICH PROTEIN 19 (GRP19); FUNCTIONS IN: lipid binding; INVOLVED IN: sexual reproduction, lipid storage; LOCATED IN: extracellular region, membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136); BEST Arabidopsis thaliana protein match is: GRP14; lipid binding / nutrient reservoir (TAIR:AT5G07510.3); Has 337 Blast hits to 337 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 337; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G07550.3p  transcript_id AT5G07550.3  protein_id AT5G07550.3p  transcript_id AT5G07550.3  
At5g07560	chr5:002390728	0.0	C/2390728-2391044,2390468-2390612	AT5G07560.1  CDS  gene_syn ATGRP20, GLYCINE-RICH PROTEIN 20, GRP20, T2I1.270, T2I1_270  gene GRP20  function Lipid-binding oleosins, glycine-rich protein.  go_component monolayer-surrounded lipid storage body|GO:0012511||IEA  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  go_process lipid storage|GO:0019915||ISS  go_process sexual reproduction|GO:0019953||ISS  go_function lipid binding|GO:0008289|11431566|ISS  go_function nutrient reservoir activity|GO:0045735||ISS  product GRP20 (GLYCINE-RICH PROTEIN 20); lipid binding / nutrient reservoir  note GLYCINE-RICH PROTEIN 20 (GRP20); FUNCTIONS IN: lipid binding, nutrient reservoir activity; INVOLVED IN: sexual reproduction, lipid storage; LOCATED IN: monolayer-surrounded lipid storage body, integral to membrane, membrane; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G07571.1); Has 471 Blast hits to 465 proteins in 81 species: Archae - 0; Bacteria - 66; Metazoa - 6; Fungi - 6; Plants - 382; Viruses - 1; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G07560.1p  transcript_id AT5G07560.1  protein_id AT5G07560.1p  transcript_id AT5G07560.1  
At5g07570	chr5:002391722	0.0	W/2391722-2393009,2393103-2396329	AT5G07570.1  CDS  gene_syn T2I1.280, T2I1_280  go_component endomembrane system|GO:0012505||IEA  product glycine/proline-rich protein  note glycine/proline-rich protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: structural constituent of cell wall (TAIR:AT3G22142.1); Has 36657 Blast hits to 14158 proteins in 805 species: Archae - 137; Bacteria - 6438; Metazoa - 19592; Fungi - 2486; Plants - 1988; Viruses - 966; Other Eukaryotes - 5050 (source: NCBI BLink).  protein_id AT5G07570.1p  transcript_id AT5G07570.1  protein_id AT5G07570.1p  transcript_id AT5G07570.1  
At5g07571	chr5:002396895	0.0	C/2396895-2397181,2396566-2396668	AT5G07571.1  CDS  go_component monolayer-surrounded lipid storage body|GO:0012511||IEA  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: monolayer-surrounded lipid storage body, integral to membrane; CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136); BEST Arabidopsis thaliana protein match is: GRP20 (GLYCINE-RICH PROTEIN 20); lipid binding / nutrient reservoir (TAIR:AT5G07560.1); Has 374 Blast hits to 374 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 374; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G07571.1p  transcript_id AT5G07571.1  protein_id AT5G07571.1p  transcript_id AT5G07571.1  
At5g07572	chr5:002396913	0.0	W/2396913-2397263	AT5G07572.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G07572.1p  transcript_id AT5G07572.1  protein_id AT5G07572.1p  transcript_id AT5G07572.1  
At5g07580	chr5:002399525	0.0	W/2399525-2400349	AT5G07580.1  CDS  gene_syn MBK20.1  function encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9687012|TAS  go_function transcription factor activity|GO:0003700||ISS  product DNA binding / transcription factor  note DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: ethylene mediated signaling pathway, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor family protein (TAIR:AT5G61590.1); Has 3875 Blast hits to 3699 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3865; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G07580.1p  transcript_id AT5G07580.1  protein_id AT5G07580.1p  transcript_id AT5G07580.1  
At5g07590	chr5:002403615	0.0	C/2403615-2403731,2402879-2403367,2402555-2402776,2402396-2402468,2402191-2402298,2401712-2402079	AT5G07590.1  CDS  gene_syn MBK20.2, MBK20_2  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product WD-40 repeat protein family  note WD-40 repeat protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); Has 498 Blast hits to 479 proteins in 120 species: Archae - 0; Bacteria - 57; Metazoa - 236; Fungi - 114; Plants - 42; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT5G07590.1p  transcript_id AT5G07590.1  protein_id AT5G07590.1p  transcript_id AT5G07590.1  
At5g07600	chr5:002405237	0.0	C/2405237-2405481,2404652-2405099	AT5G07600.1  CDS  gene_syn MBK20.3, MBK20_3  go_component endomembrane system|GO:0012505||IEA  go_component monolayer-surrounded lipid storage body|GO:0012511||IEA  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  go_process lipid storage|GO:0019915||ISS  product oleosin / glycine-rich protein  note oleosin / glycine-rich protein; INVOLVED IN: lipid storage; LOCATED IN: monolayer-surrounded lipid storage body, endomembrane system, integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136); BEST Arabidopsis thaliana protein match is: GRP18 (GLYCINE-RICH PROTEIN 18); lipid binding / nutrient reservoir (TAIR:AT5G07520.1); Has 19340 Blast hits to 7047 proteins in 645 species: Archae - 59; Bacteria - 7608; Metazoa - 4998; Fungi - 1099; Plants - 2097; Viruses - 236; Other Eukaryotes - 3243 (source: NCBI BLink).  protein_id AT5G07600.1p  transcript_id AT5G07600.1  protein_id AT5G07600.1p  transcript_id AT5G07600.1  
At5g07610	chr5:002406068	0.0	W/2406068-2407330	AT5G07610.1  CDS  gene_syn MBK20.4, MBK20_4  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G49610.1); Has 732 Blast hits to 726 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 1; Plants - 729; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G07610.1p  transcript_id AT5G07610.1  protein_id AT5G07610.1p  transcript_id AT5G07610.1  
At5g07620	chr5:002408568	0.0	C/2408568-2409066,2407401-2407981	AT5G07620.1  CDS  gene_syn MBK20.5, MBK20_5  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G61570.2); Has 63777 Blast hits to 63144 proteins in 1668 species: Archae - 30; Bacteria - 4711; Metazoa - 28274; Fungi - 4268; Plants - 16237; Viruses - 193; Other Eukaryotes - 10064 (source: NCBI BLink).  protein_id AT5G07620.1p  transcript_id AT5G07620.1  protein_id AT5G07620.1p  transcript_id AT5G07620.1  
At5g07630	chr5:002410703	0.0	W/2410703-2410729,2410882-2410921,2411360-2411491,2411602-2411681,2411928-2412022,2412115-2412275,2412404-2412555,2412640-2412758,2412868-2412959,2413104-2413193,2413338-2413409,2413537-2413674,2413778-2413933,2414042-2414094,2414179-2414357,2414457-2414523	AT5G07630.1  CDS  gene_syn MBK20.7, MBK20_7  go_component membrane|GO:0016020|17432890|IDA  go_process lipid transport|GO:0006869||IEA  go_function lipid transporter activity|GO:0005319||IEA  go_component membrane|GO:0016020|11152613|ISS  go_process nuclear division|GO:0000280||ISS  product lipid transporter  note lipid transporter; FUNCTIONS IN: lipid transporter activity; INVOLVED IN: nuclear division, lipid transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RFT1 (InterPro:IPR007594); Has 245 Blast hits to 243 proteins in 130 species: Archae - 0; Bacteria - 3; Metazoa - 93; Fungi - 91; Plants - 20; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT5G07630.1p  transcript_id AT5G07630.1  protein_id AT5G07630.1p  transcript_id AT5G07630.1  
At5g07625	chr5:002411148	0.0	W/2411148-2411231	AT5G07625.1  tRNA  gene_syn 67601.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: CAA)  transcript_id AT5G07625.1  
At5g07640	chr5:002414847	0.0	W/2414847-2415122,2415202-2415876	AT5G07640.1  CDS  gene_syn MBK20.8, MBK20_8  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G19610.2); Has 592 Blast hits to 583 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 248; Fungi - 33; Plants - 168; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).  protein_id AT5G07640.1p  transcript_id AT5G07640.1  protein_id AT5G07640.1p  transcript_id AT5G07640.1  
At5g07650	chr5:002421543	0.0	C/2421543-2421814,2421357-2421429,2421142-2421246,2420946-2421044,2420763-2420804,2420565-2420645,2420416-2420466,2420257-2420338,2420089-2420138,2419734-2419794,2419567-2419634,2419420-2419491,2419228-2419344,2419037-2419105,2418886-2418952,2418660-2418757,2418478-2418549,2418294-2418392,2418155-2418196,2417934-2418086,2417744-2417794,2417568-2417649,2417302-2417396,2417154-2417225,2416974-2417090,2416784-2416852,2416600-2416666,2416375-2416496	AT5G07650.1  CDS  gene_syn MBK20.9, MBK20_9  go_component chloroplast|GO:0009507||IEA  go_process cellular component organization|GO:0016043||IEA  go_process actin cytoskeleton organization|GO:0030036||IEA  go_function actin binding|GO:0003779|12417149|ISS  go_function actin binding|GO:0003779|15256004|ISS  product formin homology 2 domain-containing protein / FH2 domain-containing protein  note formin homology 2 domain-containing protein / FH2 domain-containing protein; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Actin-binding FH2 and DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: formin homology 2 domain-containing protein / FH2 domain-containing protein (TAIR:AT5G07760.1); Has 3222 Blast hits to 1729 proteins in 169 species: Archae - 8; Bacteria - 27; Metazoa - 1993; Fungi - 207; Plants - 472; Viruses - 0; Other Eukaryotes - 515 (source: NCBI BLink).  protein_id AT5G07650.1p  transcript_id AT5G07650.1  protein_id AT5G07650.1p  transcript_id AT5G07650.1  
At5g07660	chr5:002422839	0.0	W/2422839-2422998,2423241-2423346,2423429-2423562,2423702-2423757,2423872-2423958,2424031-2424351,2424629-2424748,2425036-2425170,2425301-2425377,2425472-2425547,2425689-2425763,2425876-2425980,2426152-2426321,2426425-2426527,2426634-2426746,2427035-2427236,2427406-2427537,2427619-2427733,2427861-2427946,2428016-2428111,2428271-2428407,2428505-2428607,2428691-2428770,2428871-2428949,2429040-2429097,2429407-2429504,2429663-2429757,2429855-2429912	AT5G07660.1  CDS  gene_syn MBK20.10, MBK20_10  go_component chromosome|GO:0005694||IEA  go_component membrane|GO:0016020||IEA  go_process signal transduction|GO:0007165||IEA  go_process chromosome organization|GO:0051276||IEA  go_function two-component sensor activity|GO:0000155||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component nucleus|GO:0005634||ISS  go_process chromosome segregation|GO:0007059||ISS  go_function ATP binding|GO:0005524||ISS  product structural maintenance of chromosomes (SMC) family protein  note structural maintenance of chromosomes (SMC) family protein; FUNCTIONS IN: protein binding, two-component sensor activity, ATP binding; INVOLVED IN: signal transduction, chromosome segregation, chromosome organization; LOCATED IN: chromosome, nucleus, membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395), Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region (InterPro:IPR003661); BEST Arabidopsis thaliana protein match is: MIM (hypersensitive to MMS, irradiation and MMC); ATP binding (TAIR:AT5G61460.1); Has 83884 Blast hits to 38711 proteins in 1892 species: Archae - 1074; Bacteria - 9632; Metazoa - 40995; Fungi - 5887; Plants - 2472; Viruses - 424; Other Eukaryotes - 23400 (source: NCBI BLink).  protein_id AT5G07660.1p  transcript_id AT5G07660.1  protein_id AT5G07660.1p  transcript_id AT5G07660.1  
At5g07670	chr5:002430421	0.0	W/2430421-2431583,2431798-2432065	AT5G07670.1  CDS  gene_syn MBK20.11, MBK20_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G51380.1); Has 2187 Blast hits to 1299 proteins in 134 species: Archae - 0; Bacteria - 18; Metazoa - 1162; Fungi - 142; Plants - 676; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).  protein_id AT5G07670.1p  transcript_id AT5G07670.1  protein_id AT5G07670.1p  transcript_id AT5G07670.1  
At5g07675	chr5:002432263	0.0	C/2432263-2432335	AT5G07675.1  tRNA  gene_syn 67601.TRNA-ALA-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: AGC)  transcript_id AT5G07675.1  
At5g07680	chr5:002436092	0.0	W/2436092-2436281,2436400-2436677,2436801-2437322	AT5G07680.1  CDS  gene_syn ANAC079, ANAC080, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 79, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 80, ATNAC4, MBK20.13, MBK20_13  gene ANAC080  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ANAC080 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 80); transcription factor  note ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 80 (ANAC080); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC100 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 100); transcription factor (TAIR:AT5G61430.1); Has 1690 Blast hits to 1688 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1690; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G07680.1p  transcript_id AT5G07680.1  protein_id AT5G07680.1p  transcript_id AT5G07680.1  
At5g07680	chr5:002436134	0.0	W/2436134-2436281,2436400-2436677,2436801-2437322	AT5G07680.2  CDS  gene_syn ANAC079, ANAC080, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 79, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 80, ATNAC4, MBK20.13, MBK20_13  gene ANAC080  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ANAC080 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 80); transcription factor  note ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 80 (ANAC080); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC100 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 100); transcription factor (TAIR:AT5G61430.1); Has 1687 Blast hits to 1685 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1687; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G07680.2p  transcript_id AT5G07680.2  protein_id AT5G07680.2p  transcript_id AT5G07680.2  
At5g07685	chr5:002441439	0.0	W/2441439-2443509	AT5G07685.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 3.0e-118 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element)  
At5g07690	chr5:002447090	0.0	W/2447090-2447222,2447319-2447448,2447538-2448285	AT5G07690.1  CDS  gene_syn ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 29, ATMYB29, MBK20.15, MBK20_15, MYB29, PMG2, PRODUCTION OF METHIONINE-DERIVED GLUCOSINOLATE 2, myb domain protein 29  gene ATMYB29  function Encodes a putative transcription factor (MYB29).  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process cellular response to sulfur starvation|GO:0010438|17420480|TAS  go_process regulation of glucosinolate biosynthetic process|GO:0010439|17420480|IMP  go_process regulation of transcription|GO:0045449|17420480|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ATMYB29 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 29); DNA binding / transcription factor  note ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 29 (ATMYB29); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 7 processes; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB76 (myb domain protein 76); DNA binding / transcription factor (TAIR:AT5G07700.1); Has 6404 Blast hits to 5863 proteins in 356 species: Archae - 0; Bacteria - 0; Metazoa - 738; Fungi - 311; Plants - 3757; Viruses - 6; Other Eukaryotes - 1592 (source: NCBI BLink).  protein_id AT5G07690.1p  transcript_id AT5G07690.1  protein_id AT5G07690.1p  transcript_id AT5G07690.1  
At5g07700	chr5:002450325	0.0	W/2450325-2450457,2450585-2450714,2450825-2451578	AT5G07700.1  CDS  gene_syn AtMYB76, MBK20.16, MBK20_16, MYB76, myb domain protein 76  gene MYB76  function Encodes a putative transcription factor (MYB76).  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB76 (myb domain protein 76); DNA binding / transcription factor  note myb domain protein 76 (MYB76); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to jasmonic acid stimulus, response to auxin stimulus, regulation of transcription, DNA-dependent; EXPRESSED IN: hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: ATMYB29 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 29); DNA binding / transcription factor (TAIR:AT5G07690.1); Has 6318 Blast hits to 5845 proteins in 351 species: Archae - 0; Bacteria - 0; Metazoa - 675; Fungi - 305; Plants - 3759; Viruses - 3; Other Eukaryotes - 1576 (source: NCBI BLink).  protein_id AT5G07700.1p  transcript_id AT5G07700.1  protein_id AT5G07700.1p  transcript_id AT5G07700.1  
At5g07710	chr5:002453310	0.0	W/2453310-2453583,2453787-2453944,2454078-2454124,2454214-2454277,2454379-2455010,2455126-2455357	AT5G07710.1  CDS  gene_syn MBK20.17, MBK20_17  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function exonuclease activity|GO:0004527||IEA  go_component intracellular|GO:0005622||ISS  go_process biological_process|GO:0008150||ND  go_function exonuclease activity|GO:0004527||ISS  product exonuclease family protein  note exonuclease family protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T and DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: exonuclease family protein (TAIR:AT5G61390.1); Has 443 Blast hits to 439 proteins in 151 species: Archae - 0; Bacteria - 285; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT5G07710.1p  transcript_id AT5G07710.1  protein_id AT5G07710.1p  transcript_id AT5G07710.1  
At5g07720	chr5:002455757	0.0	W/2455757-2457130	AT5G07720.1  CDS  gene_syn MBK20.18, MBK20_18  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product galactosyl transferase GMA12/MNN10 family protein  note galactosyl transferase GMA12/MNN10 family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Galactosyl transferase (InterPro:IPR008630); BEST Arabidopsis thaliana protein match is: XXT5 (XYLOGLUCAN XYLOSYLTRANSFERASE 5); transferase/ transferase, transferring glycosyl groups / xyloglucan 6-xylosyltransferase (TAIR:AT1G74380.1); Has 297 Blast hits to 295 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 110; Plants - 176; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT5G07720.1p  transcript_id AT5G07720.1  protein_id AT5G07720.1p  transcript_id AT5G07720.1  
At5g07730	chr5:002457676	0.0	C/2457676-2458383,2457509-2457595	AT5G07730.1  CDS  gene_syn MBK20.19, MBK20_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G61360.1); Has 12 Blast hits to 12 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 1; Plants - 7; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G07730.1p  transcript_id AT5G07730.1  protein_id AT5G07730.1p  transcript_id AT5G07730.1  
At5g07740	chr5:002458629	0.0	C/2458629-2466580	AT5G07740.1  pseudogenic_transcript  pseudo  gene_syn MBK20.20, MBK20_20  note pseudogene, formin homology 2 (FH2) domain-containing protein, contains formin homology 2 domain, Pfam:PF02128; blastp match of 59% identity and 3.3e-175 P-value to GP|27817931|dbj|BAC55695.1||AP004275 P0453E05.6 {Oryza sativa (japonica cultivar-group)}  
At5g07760	chr5:002468239	0.0	W/2468239-2468750,2468874-2468949,2469100-2469174,2469264-2469362,2469449-2469490,2469607-2469687,2469806-2469856,2469946-2470027,2470153-2470214,2470308-2470379,2470459-2470575,2470670-2470738,2470823-2470889,2470993-2471156,2471294-2471365,2471465-2471563,2471693-2471734,2471899-2471979,2472074-2472124,2472219-2472300,2472494-2472588,2472654-2472725,2472800-2472916,2473116-2473184,2473293-2473359,2473512-2473657	AT5G07760.1  CDS  gene_syn MBK20.22, MBK20_22  go_component chloroplast|GO:0009507||IEA  go_process cellular component organization|GO:0016043||IEA  go_process actin cytoskeleton organization|GO:0030036||IEA  go_function actin binding|GO:0003779|12417149|ISS  go_function actin binding|GO:0003779|15256004|ISS  go_function actin binding|GO:0003779||ISS  product formin homology 2 domain-containing protein / FH2 domain-containing protein  note formin homology 2 domain-containing protein / FH2 domain-containing protein; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; LOCATED IN: chloroplast; EXPRESSED IN: shoot apex; CONTAINS InterPro DOMAIN/s: Actin-binding FH2 and DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: formin homology 2 domain-containing protein / FH2 domain-containing protein (TAIR:AT5G07650.1); Has 44227 Blast hits to 20550 proteins in 996 species: Archae - 64; Bacteria - 6013; Metazoa - 17694; Fungi - 3942; Plants - 9369; Viruses - 1604; Other Eukaryotes - 5541 (source: NCBI BLink).  protein_id AT5G07760.1p  transcript_id AT5G07760.1  protein_id AT5G07760.1p  transcript_id AT5G07760.1  
At5g07770	chr5:002474816	0.0	W/2474816-2475111,2475230-2475350,2475711-2475955,2476056-2476146,2476413-2476484,2476584-2476682,2476786-2476827,2476950-2477030,2477125-2477175,2477266-2477347,2477507-2477601,2477703-2477774,2477850-2477966,2478107-2478175,2478282-2478348,2478454-2479022	AT5G07770.1  CDS  gene_syn MBK20.23, MBK20_23  go_component chloroplast|GO:0009507||IEA  go_function actin binding|GO:0003779|12417149|ISS  go_function actin binding|GO:0003779|15256004|ISS  go_function actin binding|GO:0003779||ISS  product formin homology 2 domain-containing protein / FH2 domain-containing protein  note formin homology 2 domain-containing protein / FH2 domain-containing protein; FUNCTIONS IN: actin binding; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: formin homology 2 domain-containing protein / FH2 domain-containing protein (TAIR:AT5G07780.1); Has 30202 Blast hits to 12248 proteins in 656 species: Archae - 50; Bacteria - 2578; Metazoa - 12793; Fungi - 3250; Plants - 6039; Viruses - 1524; Other Eukaryotes - 3968 (source: NCBI BLink).  protein_id AT5G07770.1p  transcript_id AT5G07770.1  protein_id AT5G07770.1p  transcript_id AT5G07770.1  
At5g07780	chr5:002479707	0.0	W/2479707-2480047,2480167-2480257,2480417-2480488,2480588-2480689,2480807-2480839,2480961-2481050,2481187-2481237,2481314-2481395,2481599-2481693,2481774-2481845,2481917-2482033,2482185-2482253,2482363-2482420,2482517-2482638	AT5G07780.1  CDS  gene_syn MXM12.2, MXM12_2  go_component chloroplast|GO:0009507||IEA  go_process cellular component organization|GO:0016043||IEA  go_process actin cytoskeleton organization|GO:0030036||IEA  go_function actin binding|GO:0003779|12417149|ISS  go_function actin binding|GO:0003779|15256004|ISS  go_function actin binding|GO:0003779||ISS  product formin homology 2 domain-containing protein / FH2 domain-containing protein  note formin homology 2 domain-containing protein / FH2 domain-containing protein; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; LOCATED IN: chloroplast; EXPRESSED IN: flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Actin-binding FH2 and DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: formin homology 2 domain-containing protein / FH2 domain-containing protein (TAIR:AT5G07770.1); Has 31910 Blast hits to 13941 proteins in 749 species: Archae - 58; Bacteria - 3463; Metazoa - 12560; Fungi - 2994; Plants - 7358; Viruses - 1536; Other Eukaryotes - 3941 (source: NCBI BLink).  protein_id AT5G07780.1p  transcript_id AT5G07780.1  protein_id AT5G07780.1p  transcript_id AT5G07780.1  
At5g07790	chr5:002484073	0.0	W/2484073-2484300,2484387-2484930,2485029-2486107	AT5G07790.1  CDS  gene_syn MXM12.3, MXM12_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G61300.1); Has 391 Blast hits to 332 proteins in 89 species: Archae - 0; Bacteria - 98; Metazoa - 109; Fungi - 19; Plants - 74; Viruses - 2; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT5G07790.1p  transcript_id AT5G07790.1  protein_id AT5G07790.1p  transcript_id AT5G07790.1  
At5g07800	chr5:002488665	0.0	C/2488665-2489241,2488501-2488571,2488254-2488412,2488096-2488178,2487274-2487409,2487003-2487176,2486717-2486899	AT5G07800.1  CDS  gene_syn MXM12.4, MXM12_4  go_function flavin-containing monooxygenase activity|GO:0004499||IEA  go_function FAD binding|GO:0050660||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function monooxygenase activity|GO:0004497||ISS  product flavin-containing monooxygenase family protein / FMO family protein  note flavin-containing monooxygenase family protein / FMO family protein; FUNCTIONS IN: NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960); BEST Arabidopsis thaliana protein match is: flavin-containing monooxygenase family protein / FMO family protein (TAIR:AT5G61290.1); Has 9406 Blast hits to 9063 proteins in 960 species: Archae - 61; Bacteria - 3952; Metazoa - 1030; Fungi - 926; Plants - 436; Viruses - 0; Other Eukaryotes - 3001 (source: NCBI BLink).  protein_id AT5G07800.1p  transcript_id AT5G07800.1  protein_id AT5G07800.1p  transcript_id AT5G07800.1  
At5g07810	chr5:002498140	0.0	C/2498140-2498484,2497612-2497971,2497399-2497531,2496939-2497114,2496642-2496715,2496515-2496550,2496345-2496435,2496054-2496113,2495482-2495653,2495243-2495308,2494935-2495134,2494706-2494807,2494498-2494608,2494316-2494381,2494135-2494233,2493815-2493976,2493533-2493673,2493374-2493451,2492802-2493113,2492540-2492727,2492354-2492456,2492095-2492228,2491886-2491965,2491597-2491778,2491412-2491513	AT5G07810.1  CDS  gene_syn MXM12.5, MXM12_5  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function endonuclease activity|GO:0004519||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleic acid binding|GO:0003676||ISS  go_function helicase activity|GO:0004386||ISS  go_function ATP binding|GO:0005524||ISS  product SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein  note SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding, endonuclease activity; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), HNH endonuclease (InterPro:IPR002711), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: CHR18; ATP binding / DNA binding / helicase/ nucleic acid binding (TAIR:AT1G48310.1); Has 11497 Blast hits to 10126 proteins in 1118 species: Archae - 75; Bacteria - 3027; Metazoa - 3040; Fungi - 2232; Plants - 650; Viruses - 107; Other Eukaryotes - 2366 (source: NCBI BLink).  protein_id AT5G07810.1p  transcript_id AT5G07810.1  protein_id AT5G07810.1p  transcript_id AT5G07810.1  
At5g07820	chr5:002498861	0.0	C/2498861-2500546	AT5G07820.1  CDS  gene_syn F13G24.20, F13G24_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Calmodulin-binding, plant (InterPro:IPR012417); BEST Arabidopsis thaliana protein match is: chromosome scaffold protein-related (TAIR:AT5G61260.1); Has 10966 Blast hits to 8193 proteins in 472 species: Archae - 44; Bacteria - 781; Metazoa - 4564; Fungi - 738; Plants - 333; Viruses - 52; Other Eukaryotes - 4454 (source: NCBI BLink).  protein_id AT5G07820.1p  transcript_id AT5G07820.1  protein_id AT5G07820.1p  transcript_id AT5G07820.1  
At5g07830	chr5:002504168	0.0	W/2504168-2504392,2504489-2504525,2504621-2504804,2504903-2505051,2505126-2505362,2505461-2505650,2505754-2505879,2505990-2506089,2506184-2506567	AT5G07830.1  CDS  gene_syn Arabidopsis thaliana glucuronidase 2, AtGUS2, F13G24.30  gene AtGUS2  function Belongs to the plant glycoside hydrolase family 79. Encodes a protein with several posttranslational modification sites including O-& 946;-GlcNAc attachment sites and serine-, threonine- and tyrosine-phosphorylation sites, suggesting that this protein is extensively modified posttranslationally. The protein is predicted (WoLF PSORT program) to be membrane-associated.  go_component cell wall|GO:0005618|15593128|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_function beta-glucuronidase activity|GO:0004566|17498920|ISS  go_function beta-glucuronidase activity|GO:0004566||ISS  product AtGUS2 (Arabidopsis thaliana glucuronidase 2); beta-glucuronidase  note Arabidopsis thaliana glucuronidase 2 (AtGUS2); FUNCTIONS IN: beta-glucuronidase activity; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase family 79, N-terminal (InterPro:IPR005199); BEST Arabidopsis thaliana protein match is: AtGUS1 (Arabidopsis thaliana glucuronidase 1); beta-glucuronidase (TAIR:AT5G61250.2); Has 253 Blast hits to 250 proteins in 51 species: Archae - 0; Bacteria - 23; Metazoa - 131; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT5G07830.1p  transcript_id AT5G07830.1  protein_id AT5G07830.1p  transcript_id AT5G07830.1  
At5g07840	chr5:002506764	0.0	C/2506764-2507291	AT5G07840.1  CDS  gene_syn F13G24.40  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT5G61230.1); Has 50208 Blast hits to 17627 proteins in 653 species: Archae - 46; Bacteria - 2813; Metazoa - 29912; Fungi - 2863; Plants - 1606; Viruses - 449; Other Eukaryotes - 12519 (source: NCBI BLink).  protein_id AT5G07840.1p  transcript_id AT5G07840.1  protein_id AT5G07840.1p  transcript_id AT5G07840.1  
At5g07842	chr5:002507542	0.0	C/2507542-2507658	AT5G07842.1  CDS  gene_syn CPuORF16, Conserved peptide upstream open reading frame 16  gene CPuORF16  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF16 represents a conserved upstream opening reading frame relative to major ORF AT5G07840.1  go_component endomembrane system|GO:0012505||IEA  product CPuORF16 (Conserved peptide upstream open reading frame 16)  note Conserved peptide upstream open reading frame 16 (CPuORF16); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: CPuORF15 (Conserved peptide upstream open reading frame 15) (TAIR:AT5G61228.1); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G07842.1p  transcript_id AT5G07842.1  protein_id AT5G07842.1p  transcript_id AT5G07842.1  
At5g07850	chr5:002508917	0.0	W/2508917-2509390,2509607-2510503	AT5G07850.1  CDS  gene_syn F13G24.50, F13G24_50  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT5G42830.1); Has 1208 Blast hits to 1202 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 57; Plants - 1149; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G07850.1p  transcript_id AT5G07850.1  protein_id AT5G07850.1p  transcript_id AT5G07850.1  
At5g07860	chr5:002511449	0.0	W/2511449-2511925,2512089-2512976	AT5G07860.1  CDS  gene_syn F13G24.60, F13G24_60  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT5G07870.1); Has 1246 Blast hits to 1242 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 81; Plants - 1163; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G07860.1p  transcript_id AT5G07860.1  protein_id AT5G07860.1p  transcript_id AT5G07860.1  
At5g07870	chr5:002513864	0.0	W/2513864-2514343,2514437-2515351	AT5G07870.1  CDS  gene_syn F13G24.70, F13G24_70  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT5G07860.1); Has 1226 Blast hits to 1222 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 91; Plants - 1133; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G07870.1p  transcript_id AT5G07870.1  protein_id AT5G07870.1p  transcript_id AT5G07870.1  
At5g07880	chr5:002516347	0.0	C/2516347-2516694,2516168-2516261,2515957-2516078,2515766-2515857,2515587-2515686	AT5G07880.1  CDS  gene_syn ATSNAP29, F13G24.80, F13G24_80, SNAP29  gene SNAP29  function member of mammalian SNAP25 Gene Family, a type of SNARE proteins with two chains. There are three members in Arabidopsis: SNAP30, SNAP29, and SNAP33.  go_component cellular_component|GO:0005575||ND  go_process membrane fusion|GO:0006944|11115874|TAS  go_process vesicle-mediated transport|GO:0016192|11115874|TAS  go_function SNAP receptor activity|GO:0005484|11115874|ISS  product SNAP29; SNAP receptor  note SNAP29; FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion, vesicle-mediated transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33); SNAP receptor/ protein binding (TAIR:AT5G61210.1); Has 468 Blast hits to 468 proteins in 80 species: Archae - 0; Bacteria - 2; Metazoa - 389; Fungi - 2; Plants - 55; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT5G07880.1p  transcript_id AT5G07880.1  protein_id AT5G07880.1p  transcript_id AT5G07880.1  
At5g07890	chr5:002519010	0.0	C/2519010-2519049,2518327-2518924,2518122-2518242,2517863-2518030,2517718-2517777	AT5G07890.2  CDS  gene_syn F13G24.90  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product myosin heavy chain-related  note myosin heavy chain-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G61200.1); Has 24952 Blast hits to 14514 proteins in 808 species: Archae - 303; Bacteria - 1617; Metazoa - 13547; Fungi - 1395; Plants - 736; Viruses - 67; Other Eukaryotes - 7287 (source: NCBI BLink).  protein_id AT5G07890.2p  transcript_id AT5G07890.2  protein_id AT5G07890.2p  transcript_id AT5G07890.2  
At5g07890	chr5:002519374	0.0	C/2519374-2519493,2519211-2519270,2519010-2519112,2518327-2518924,2518122-2518242,2517863-2518030,2517718-2517777	AT5G07890.1  CDS  gene_syn F13G24.90  go_component nucleus|GO:0005634|14617066|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product myosin heavy chain-related  note myosin heavy chain-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G61200.1); Has 35432 Blast hits to 20384 proteins in 990 species: Archae - 403; Bacteria - 2576; Metazoa - 19466; Fungi - 2002; Plants - 1090; Viruses - 99; Other Eukaryotes - 9796 (source: NCBI BLink).  protein_id AT5G07890.1p  transcript_id AT5G07890.1  protein_id AT5G07890.1p  transcript_id AT5G07890.1  
At5g07890	chr5:002519374	0.0	C/2519374-2519493,2519211-2519270,2519010-2519112,2518327-2518924,2518122-2518242,2517863-2518030,2517718-2517777	AT5G07890.3  CDS  gene_syn F13G24.90  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product myosin heavy chain-related  note myosin heavy chain-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G61200.1); Has 35432 Blast hits to 20384 proteins in 990 species: Archae - 403; Bacteria - 2576; Metazoa - 19466; Fungi - 2002; Plants - 1090; Viruses - 99; Other Eukaryotes - 9796 (source: NCBI BLink).  protein_id AT5G07890.3p  transcript_id AT5G07890.3  protein_id AT5G07890.3p  transcript_id AT5G07890.3  
At5g07900	chr5:002520188	0.0	W/2520188-2521405	AT5G07900.1  CDS  gene_syn F13G24.100  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial transcription termination factor family protein / mTERF family protein  note mitochondrial transcription termination factor family protein / mTERF family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: mitochondrial transcription termination factor family protein / mTERF family protein (TAIR:AT1G21150.1); Has 434 Blast hits to 369 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 0; Plants - 392; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G07900.1p  transcript_id AT5G07900.1  protein_id AT5G07900.1p  transcript_id AT5G07900.1  
At5g07910	chr5:002523668	0.0	C/2523668-2523769,2523340-2523409,2523203-2523249,2522945-2523053,2522763-2522848,2522594-2522684,2522322-2522407,2522143-2522229,2521937-2522047	AT5G07910.1  CDS  gene_syn F13G24.110  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein binding|GO:0005515||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: ubiquitin family protein (TAIR:AT2G30100.1); Has 48181 Blast hits to 20829 proteins in 795 species: Archae - 45; Bacteria - 4596; Metazoa - 24914; Fungi - 1521; Plants - 13970; Viruses - 0; Other Eukaryotes - 3135 (source: NCBI BLink).  protein_id AT5G07910.1p  transcript_id AT5G07910.1  protein_id AT5G07910.1p  transcript_id AT5G07910.1  
At5g07920	chr5:002527227	0.0	C/2527227-2528396,2526742-2527108,2526280-2526356,2526000-2526119,2525759-2525923,2525526-2525663,2525197-2525346	AT5G07920.1  CDS  gene_syn ATDGK1, DGK1, DIACYLGLYCEROL KINASE 1, DIACYLGLYCEROL KINASE1, F13G24.120, F13G24_120  gene DGK1  function diacylglycerol kinase  go_process activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|GO:0007205||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_component cellular_component|GO:0005575||ND  go_process activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|GO:0007205||ISS  go_function diacylglycerol kinase activity|GO:0004143|16081412|TAS  go_function diacylglycerol kinase activity|GO:0004143||ISS  go_function calcium ion binding|GO:0005509|8605313|ISS  product DGK1 (DIACYLGLYCEROL KINASE1); calcium ion binding / diacylglycerol kinase  note DIACYLGLYCEROL KINASE1 (DGK1); FUNCTIONS IN: diacylglycerol kinase activity, calcium ion binding; INVOLVED IN: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway, intracellular signaling cascade; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Diacylglycerol kinase, catalytic region (InterPro:IPR001206), Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Diacylglycerol kinase accessory region (InterPro:IPR000756); BEST Arabidopsis thaliana protein match is: ATDGK2 (Diacylglycerol kinase 2); diacylglycerol kinase (TAIR:AT5G63770.1); Has 1698 Blast hits to 1169 proteins in 175 species: Archae - 0; Bacteria - 137; Metazoa - 1233; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).  protein_id AT5G07920.1p  transcript_id AT5G07920.1  protein_id AT5G07920.1p  transcript_id AT5G07920.1  
At5g07930	chr5:002530865	0.0	W/2530865-2531304,2531458-2531574,2531812-2531957,2532071-2532216	AT5G07930.1  CDS  gene_syn F13G24.130, MCT2, mei2 C-Terminal RRM only like 2  gene MCT2  function a member of mei2-like gene family; phylogenetic analysis revealed that it belongs to the fourth clade of mei2-like proteins, with conserved C-terminal RNA recognition motif (RRM) only.  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product MCT2 (mei2 C-Terminal RRM only like 2); nucleic acid binding  note mei2 C-Terminal RRM only like 2 (MCT2); FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), RNA recognition motif 2 (InterPro:IPR007201); BEST Arabidopsis thaliana protein match is: TEL2 (TERMINAL EAR1-LIKE 2); RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT1G67770.1); Has 396 Blast hits to 288 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 40; Plants - 276; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT5G07930.1p  transcript_id AT5G07930.1  protein_id AT5G07930.1p  transcript_id AT5G07930.1  
At5g07930	chr5:002530865	0.0	W/2530865-2531304,2531458-2531574,2531812-2532028	AT5G07930.2  CDS  gene_syn F13G24.130, MCT2, mei2 C-Terminal RRM only like 2  gene MCT2  function a member of mei2-like gene family; phylogenetic analysis revealed that it belongs to the fourth clade of mei2-like proteins, with conserved C-terminal RNA recognition motif (RRM) only.  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product MCT2 (mei2 C-Terminal RRM only like 2); nucleic acid binding  note mei2 C-Terminal RRM only like 2 (MCT2); FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), RNA recognition motif 2 (InterPro:IPR007201); BEST Arabidopsis thaliana protein match is: TEL2 (TERMINAL EAR1-LIKE 2); RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT1G67770.1); Has 393 Blast hits to 285 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 40; Plants - 273; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT5G07930.2p  transcript_id AT5G07930.2  protein_id AT5G07930.2p  transcript_id AT5G07930.2  
At5g07940	chr5:002534720	0.0	W/2534720-2534912,2535021-2537134,2537216-2537352,2537611-2539140,2539218-2539266,2539346-2539587,2539676-2539780,2539876-2540086	AT5G07940.1  CDS  gene_syn F13G24.140  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: pollen tube; BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G07980.1); Has 1902 Blast hits to 1005 proteins in 152 species: Archae - 2; Bacteria - 147; Metazoa - 535; Fungi - 166; Plants - 86; Viruses - 0; Other Eukaryotes - 966 (source: NCBI BLink).  protein_id AT5G07940.1p  transcript_id AT5G07940.1  protein_id AT5G07940.1p  transcript_id AT5G07940.1  
At5g07950	chr5:002541803	0.0	C/2541803-2542047,2541624-2541708,2541496-2541537,2541239-2541404,2541093-2541145,2540792-2541013,2540665-2540711,2540530-2540581	AT5G07950.1  CDS  gene_syn F13G24.150  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G07950.1p  transcript_id AT5G07950.1  protein_id AT5G07950.1p  transcript_id AT5G07950.1  
At5g07960	chr5:002542350	0.0	W/2542350-2542508,2542911-2543011,2543190-2543253	AT5G07960.1  CDS  gene_syn F13G24.160  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0139 (InterPro:IPR005351); Has 146 Blast hits to 146 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G07960.1p  transcript_id AT5G07960.1  protein_id AT5G07960.1p  transcript_id AT5G07960.1  
At5g07970	chr5:002547727	0.0	C/2547727-2547916,2545077-2547579,2544951-2544999,2544632-2544867,2544436-2544540,2544126-2544336	AT5G07970.1  CDS  gene_syn F13G24.1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product dentin sialophosphoprotein-related  note dentin sialophosphoprotein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G07980.1); Has 597 Blast hits to 418 proteins in 73 species: Archae - 0; Bacteria - 68; Metazoa - 170; Fungi - 26; Plants - 66; Viruses - 0; Other Eukaryotes - 267 (source: NCBI BLink).  protein_id AT5G07970.1p  transcript_id AT5G07970.1  protein_id AT5G07970.1p  transcript_id AT5G07970.1  
At5g07980	chr5:002554480	0.0	C/2554480-2554669,2552318-2554344,2552101-2552237,2550376-2551926,2550248-2550296,2549926-2550167,2549730-2549834,2549432-2549636	AT5G07980.1  CDS  gene_syn F13G24.2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product dentin sialophosphoprotein-related  note dentin sialophosphoprotein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G07940.1); Has 1282 Blast hits to 687 proteins in 125 species: Archae - 4; Bacteria - 196; Metazoa - 364; Fungi - 103; Plants - 92; Viruses - 0; Other Eukaryotes - 523 (source: NCBI BLink).  protein_id AT5G07980.1p  transcript_id AT5G07980.1  protein_id AT5G07980.1p  transcript_id AT5G07980.1  
At5g07990	chr5:002560437	0.0	W/2560437-2560886,2561610-2562050,2562129-2562299,2562380-2562859	AT5G07990.1  CDS  gene_syn CYP75B1, CYTOCHROME P450 75B1, D501, F13G24.190, F13G24_190, F3 H, FLAVONOID 3 -HYDROXYLASE, TRANSPARENT TESTA 7, TT7  gene TT7  function Required for flavonoid 3  hydroxylase activity.  go_process response to UV|GO:0009411|11030432|IEP  go_process response to sucrose stimulus|GO:0009744|16384906|IEP  go_process flavonoid biosynthetic process|GO:0009813|11030432|TAS  go_function flavonoid 3 -monooxygenase activity|GO:0016711|11030432|IDA  go_function flavonoid 3 -monooxygenase activity|GO:0016711||TAS  go_function oxygen binding|GO:0019825||ISS  product TT7 (TRANSPARENT TESTA 7); flavonoid 3 -monooxygenase/ oxygen binding  note TRANSPARENT TESTA 7 (TT7); FUNCTIONS IN: flavonoid 3 -monooxygenase activity, oxygen binding; INVOLVED IN: response to UV, response to sucrose stimulus, flavonoid biosynthetic process; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP706A5; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G12310.1); Has 24652 Blast hits to 24482 proteins in 1314 species: Archae - 23; Bacteria - 2731; Metazoa - 10527; Fungi - 4548; Plants - 5814; Viruses - 3; Other Eukaryotes - 1006 (source: NCBI BLink).  protein_id AT5G07990.1p  transcript_id AT5G07990.1  protein_id AT5G07990.1p  transcript_id AT5G07990.1  
At5g08000	chr5:002563684	0.0	W/2563684-2563735,2564006-2564245,2564405-2564438,2565024-2565282	AT5G08000.1  CDS  gene_syn E13L3, F13G24.200, F13G24_200, GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 3, PDCB2, PLASMODESMATA CALLOSE-BINDING PROTEIN 2  gene E13L3  function Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and binds callose.  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_component plasmodesma|GO:0009506|19223515|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function polysaccharide binding|GO:0030247|19223515|IDA  go_function callose binding|GO:0080087|19223515|IDA  product E13L3 (GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 3); callose binding / polysaccharide binding  note GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 3 (E13L3); FUNCTIONS IN: callose binding, polysaccharide binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasmodesma, anchored to plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: PDCB1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 1); callose binding / polysaccharide binding (TAIR:AT5G61130.1); Has 917 Blast hits to 879 proteins in 76 species: Archae - 0; Bacteria - 4; Metazoa - 14; Fungi - 112; Plants - 771; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT5G08000.1p  transcript_id AT5G08000.1  protein_id AT5G08000.1p  transcript_id AT5G08000.1  
At5g08010	chr5:002569606	0.0	W/2569606-2570230,2570315-2570610,2570834-2571613	AT5G08010.1  CDS  gene_syn F13G24.210, F13G24_210  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G61040.1); Has 4961 Blast hits to 3615 proteins in 307 species: Archae - 43; Bacteria - 227; Metazoa - 2137; Fungi - 189; Plants - 129; Viruses - 36; Other Eukaryotes - 2200 (source: NCBI BLink).  protein_id AT5G08010.1p  transcript_id AT5G08010.1  protein_id AT5G08010.1p  transcript_id AT5G08010.1  
At5g08020	chr5:002572107	0.0	W/2572107-2572234,2572467-2572616,2572711-2572863,2572957-2573134,2573226-2573496,2573590-2573817,2573901-2574124,2574203-2574363,2574465-2574585,2574679-2574879	AT5G08020.1  CDS  gene_syn ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, ATRPA70B, F13G24.220, F13G24_220, RPA70-KDA SUBUNIT B, RPA70B  gene RPA70B  function Encodes a homolog of Replication Protein A. rpa70b mutants are hypersensitive to UV-B radiation and MMS treatments suggesting a role for this protein in DNA damage repair.  go_component nucleus|GO:0005634||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_process DNA replication|GO:0006260||ISS  go_process DNA repair|GO:0006281|15978034|TAS  go_process response to UV-B|GO:0010224|15978034|IMP  product RPA70B (RPA70-KDA SUBUNIT B); DNA binding / nucleic acid binding  note RPA70-KDA SUBUNIT B (RPA70B); FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: DNA repair, response to UV-B, DNA replication; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Replication factor-a protein 1 Rpa1 (InterPro:IPR004591), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Replication factor-A, C-terminal (InterPro:IPR013955), Replication factor-A protein 1, N-terminal (InterPro:IPR007199); BEST Arabidopsis thaliana protein match is: replication protein, putative (TAIR:AT5G61000.1); Has 616 Blast hits to 612 proteins in 163 species: Archae - 8; Bacteria - 0; Metazoa - 184; Fungi - 92; Plants - 214; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).  protein_id AT5G08020.1p  transcript_id AT5G08020.1  protein_id AT5G08020.1p  transcript_id AT5G08020.1  
At5g08030	chr5:002576758	0.0	C/2576758-2576770,2576499-2576680,2576241-2576424,2575968-2576152,2575658-2575876,2575426-2575581,2575152-2575331	AT5G08030.1  CDS  gene_syn T22D6.1  go_component endomembrane system|GO:0012505||IEA  go_process glycerol metabolic process|GO:0006071||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function phosphoric diester hydrolase activity|GO:0008081||IEA  go_function glycerophosphodiester phosphodiesterase activity|GO:0008889||IEA  go_process glycerol metabolic process|GO:0006071||ISS  go_function glycerophosphodiester phosphodiesterase activity|GO:0008889||ISS  product glycerophosphoryl diester phosphodiesterase family protein  note glycerophosphoryl diester phosphodiesterase family protein; FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: glycerophosphoryl diester phosphodiesterase family protein (TAIR:AT1G74210.1); Has 3759 Blast hits to 3684 proteins in 902 species: Archae - 38; Bacteria - 2454; Metazoa - 161; Fungi - 87; Plants - 193; Viruses - 4; Other Eukaryotes - 822 (source: NCBI BLink).  protein_id AT5G08030.1p  transcript_id AT5G08030.1  protein_id AT5G08030.1p  transcript_id AT5G08030.1  
At5g08040	chr5:002577987	0.0	C/2577987-2578073,2577358-2577435	AT5G08040.1  CDS  gene_syn MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM5 HOMOLOG, T22D6.2, TOM5  gene TOM5  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product TOM5 (MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM5 HOMOLOG)  note MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM5 HOMOLOG (TOM5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G08040.1p  transcript_id AT5G08040.1  protein_id AT5G08040.1p  transcript_id AT5G08040.1  
At5g08050	chr5:002578418	0.0	W/2578418-2578516,2578587-2578964	AT5G08050.1  CDS  gene_syn T22D6.3  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1118 (InterPro:IPR009500), Uncharacterised conserved protein UCP022207 (InterPro:IPR016801); Has 41 Blast hits to 41 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G08050.1p  transcript_id AT5G08050.1  protein_id AT5G08050.1p  transcript_id AT5G08050.1  
At5g08055	chr5:002579401	0.0	W/2579401-2579458,2579615-2579802	AT5G08055.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08315.1); Has 11 Blast hits to 11 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G08055.1p  transcript_id AT5G08055.1  protein_id AT5G08055.1p  transcript_id AT5G08055.1  
At5g08060	chr5:002580588	0.0	W/2580588-2580983	AT5G08060.1  CDS  gene_syn T22D6.4  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; Has 25 Blast hits to 25 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G08060.1p  transcript_id AT5G08060.1  protein_id AT5G08060.1p  transcript_id AT5G08060.1  
At5g08070	chr5:002584885	0.0	W/2584885-2585613	AT5G08070.1  CDS  gene_syn T22D6.10, T22D6_10, TCP DOMAIN PROTEIN 17, TCP17  gene TCP17  function TCP gene involved in heterochronic control of leaf differentiation.  go_process leaf morphogenesis|GO:0009965|18805992|IGI  go_process cell differentiation|GO:0030154|18805992|IGI  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process positive regulation of development, heterochronic|GO:0045962|18805992|IGI  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product TCP17 (TCP DOMAIN PROTEIN 17); transcription factor  note TCP DOMAIN PROTEIN 17 (TCP17); FUNCTIONS IN: transcription factor activity; INVOLVED IN: cell differentiation, positive regulation of development, heterochronic, leaf morphogenesis, regulation of transcription; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP5 (TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 5); transcription factor (TAIR:AT5G60970.1); Has 1128 Blast hits to 1128 proteins in 258 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G08070.1p  transcript_id AT5G08070.1  protein_id AT5G08070.1p  transcript_id AT5G08070.1  
At5g08075	chr5:002587826	0.0	C/2587826-2587898	AT5G08075.1  tRNA  gene_syn 67604.TRNA-ALA-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: CGC)  transcript_id AT5G08075.1  
At5g08080	chr5:002588532	0.0	W/2588532-2588549,2588825-2588926,2589004-2589060,2589310-2589358,2589532-2589620,2589710-2589783,2589948-2589990,2590065-2590125,2590229-2590254,2590336-2590413,2590531-2590611,2590761-2590826,2590936-2591106	AT5G08080.1  CDS  gene_syn ATSYP132, SYNTAXIN OF PLANTS 132, SYP132, T22D6.20, T22D6_20  gene SYP132  function member of SYP13 Gene Family  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process intracellular protein transport|GO:0006886|11115874|TAS  go_process membrane fusion|GO:0006944|11115874|TAS  go_function SNAP receptor activity|GO:0005484|11115874|TAS  product SYP132 (SYNTAXIN OF PLANTS 132); SNAP receptor  note SYNTAXIN OF PLANTS 132 (SYP132); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion, intracellular protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), t-SNARE (InterPro:IPR010989), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: SYP131 (SYNTAXIN OF PLANTS 131); SNAP receptor (TAIR:AT3G03800.1); Has 2077 Blast hits to 2062 proteins in 240 species: Archae - 14; Bacteria - 51; Metazoa - 1045; Fungi - 322; Plants - 289; Viruses - 1; Other Eukaryotes - 355 (source: NCBI BLink).  protein_id AT5G08080.1p  transcript_id AT5G08080.1  protein_id AT5G08080.1p  transcript_id AT5G08080.1  
At5g08080	chr5:002588532	0.0	W/2588532-2588549,2588825-2588926,2589004-2589060,2589310-2589358,2589532-2589620,2589710-2589783,2589948-2589990,2590065-2590125,2590229-2590254,2590336-2590488	AT5G08080.2  CDS  gene_syn ATSYP132, SYNTAXIN OF PLANTS 132, SYP132, T22D6.20, T22D6_20  gene SYP132  function member of SYP13 Gene Family  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process intracellular protein transport|GO:0006886|11115874|TAS  go_process membrane fusion|GO:0006944|11115874|TAS  go_function SNAP receptor activity|GO:0005484|11115874|TAS  product SYP132 (SYNTAXIN OF PLANTS 132); SNAP receptor  note SYNTAXIN OF PLANTS 132 (SYP132); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion, intracellular protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: t-SNARE (InterPro:IPR010989), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: SYP131 (SYNTAXIN OF PLANTS 131); SNAP receptor (TAIR:AT3G03800.1); Has 380 Blast hits to 380 proteins in 88 species: Archae - 0; Bacteria - 3; Metazoa - 178; Fungi - 27; Plants - 158; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT5G08080.2p  transcript_id AT5G08080.2  protein_id AT5G08080.2p  transcript_id AT5G08080.2  
At5g08090	chr5:002591711	0.0	W/2591711-2591961,2592182-2592899	AT5G08090.1  CDS  gene_syn T22D6.30, T22D6_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 8 Blast hits to 8 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G08090.1p  transcript_id AT5G08090.1  protein_id AT5G08090.1p  transcript_id AT5G08090.1  
At5g08100	chr5:002593980	0.0	C/2593980-2594138,2593802-2593888,2593242-2593703	AT5G08100.2  CDS  gene_syn T22D6.40, T22D6_40  go_component cellular_component|GO:0005575||ND  go_process glycoprotein catabolic process|GO:0006516||ISS  go_function asparaginase activity|GO:0004067|16705405|IDA  go_function asparaginase activity|GO:0004067||ISS  product L-asparaginase / L-asparagine amidohydrolase  note L-asparaginase / L-asparagine amidohydrolase; FUNCTIONS IN: asparaginase activity; INVOLVED IN: glycoprotein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase T2, asparaginase 2 (InterPro:IPR000246); BEST Arabidopsis thaliana protein match is: L-asparaginase, putative / L-asparagine amidohydrolase, putative (TAIR:AT3G16150.1); Has 2163 Blast hits to 2162 proteins in 516 species: Archae - 67; Bacteria - 868; Metazoa - 420; Fungi - 93; Plants - 108; Viruses - 0; Other Eukaryotes - 607 (source: NCBI BLink).  protein_id AT5G08100.2p  transcript_id AT5G08100.2  protein_id AT5G08100.2p  transcript_id AT5G08100.2  
At5g08100	chr5:002594422	0.0	C/2594422-2594586,2593980-2594213,2593802-2593888,2593242-2593703	AT5G08100.1  CDS  gene_syn T22D6.40, T22D6_40  go_component cellular_component|GO:0005575||ND  go_process glycoprotein catabolic process|GO:0006516||ISS  go_function asparaginase activity|GO:0004067|16705405|IDA  go_function asparaginase activity|GO:0004067||ISS  product L-asparaginase / L-asparagine amidohydrolase  note L-asparaginase / L-asparagine amidohydrolase; FUNCTIONS IN: asparaginase activity; INVOLVED IN: glycoprotein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase T2, asparaginase 2 (InterPro:IPR000246); BEST Arabidopsis thaliana protein match is: L-asparaginase, putative / L-asparagine amidohydrolase, putative (TAIR:AT3G16150.1); Has 2307 Blast hits to 2277 proteins in 516 species: Archae - 67; Bacteria - 880; Metazoa - 431; Fungi - 132; Plants - 110; Viruses - 0; Other Eukaryotes - 687 (source: NCBI BLink).  protein_id AT5G08100.1p  transcript_id AT5G08100.1  protein_id AT5G08100.1p  transcript_id AT5G08100.1  
At5g08110	chr5:002599935	0.0	C/2599935-2600114,2599428-2599832,2599254-2599334,2598478-2599155,2598243-2598374,2597462-2597563,2597296-2597381,2597101-2597208,2596924-2596999,2596699-2596835,2596446-2596605,2596166-2596345,2595805-2596077,2595573-2595728,2595242-2595478,2594970-2595155	AT5G08110.1  CDS  gene_syn T22D6.50, T22D6_50  go_process protein modification process|GO:0006464||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_component cellular_component|GO:0005575||ND  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD/DEAH box helicase, putative  note DEAD/DEAH box helicase, putative; FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), Ubiquitin (InterPro:IPR000626), DNA/RNA helicase, C-terminal (InterPro:IPR001650); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (TAIR:AT3G18600.1); Has 8911 Blast hits to 8520 proteins in 1246 species: Archae - 500; Bacteria - 5007; Metazoa - 863; Fungi - 635; Plants - 353; Viruses - 5; Other Eukaryotes - 1548 (source: NCBI BLink).  protein_id AT5G08110.1p  transcript_id AT5G08110.1  protein_id AT5G08110.1p  transcript_id AT5G08110.1  
At5g08120	chr5:002602478	0.0	C/2602478-2602678,2602133-2602216,2601355-2601675,2600995-2601213,2600743-2600898	AT5G08120.1  CDS  gene_syn ATMBP2C, MBP2C, MICROTUBULE BINDING PROTEIN 2C  gene MBP2C  function Microtubule-associated and viral movement protein binding protein. Negatively regulates KN1 association to plasmodesmata and, consequently, cell-to-cell transport. Involved in the alignment of cortical microtubules, the patterning of stomata and in restricting tobamoviral infections.  go_component microtubule cytoskeleton|GO:0015630|17965274|IDA  go_process response to water deprivation|GO:0009414|19074626|IMP  go_process stomatal complex patterning|GO:0010375|19074626|IMP  go_process plasmodesmata-mediated intercellular transport|GO:0010497|19074626|IMP  go_process cortical microtubule organization|GO:0043622|19074626|IMP  go_process defense response to virus|GO:0051607|19074626|IMP  go_function protein binding|GO:0005515|17965274|IPI  product MBP2C (MICROTUBULE BINDING PROTEIN 2C); protein binding  note MICROTUBULE BINDING PROTEIN 2C (MBP2C); FUNCTIONS IN: protein binding; INVOLVED IN: defense response to virus, cortical microtubule organization, response to water deprivation, stomatal complex patterning, plasmodesmata-mediated intercellular transport; LOCATED IN: microtubule cytoskeleton; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: MFP1 (MAR BINDING FILAMENT-LIKE PROTEIN 1); DNA binding (TAIR:AT3G16000.1); Has 4572 Blast hits to 3397 proteins in 427 species: Archae - 40; Bacteria - 307; Metazoa - 2829; Fungi - 295; Plants - 154; Viruses - 13; Other Eukaryotes - 934 (source: NCBI BLink).  protein_id AT5G08120.1p  transcript_id AT5G08120.1  protein_id AT5G08120.1p  transcript_id AT5G08120.1  
At5g08130	chr5:002608484	0.0	C/2608484-2608652,2608280-2608382,2608059-2608195,2607859-2607973,2607692-2607761,2607499-2607594,2607050-2607384,2606837-2606948,2606655-2606744	AT5G08130.3  CDS  gene_syn BIM1, T22D6.70, T22D6_70  gene BIM1  function Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein involved in brassinosteroid signaling. It synergistically interacts with BES1 to bind to E box sequences (CANNTG).  go_component nucleus|GO:0005634||IEA  go_process brassinosteroid mediated signaling|GO:0009742|15680330|IGI  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700|15680330|IDA  go_function protein binding|GO:0005515|15680330|IPI  product BIM1; DNA binding / protein binding / transcription factor  note BIM1; FUNCTIONS IN: protein binding, transcription factor activity, DNA binding; INVOLVED IN: brassinosteroid mediated signaling, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BIM2 (BES1-interacting Myc-like protein 2); DNA binding / transcription factor (TAIR:AT1G69010.1).  protein_id AT5G08130.3p  transcript_id AT5G08130.3  protein_id AT5G08130.3p  transcript_id AT5G08130.3  
At5g08130	chr5:002608484	0.0	C/2608484-2608652,2608280-2608382,2608059-2608195,2607859-2607973,2607692-2607761,2607499-2607594,2607050-2607387,2606837-2606948,2606655-2606744	AT5G08130.1  CDS  gene_syn BIM1, T22D6.70, T22D6_70  gene BIM1  function Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein involved in brassinosteroid signaling. It synergistically interacts with BES1 to bind to E box sequences (CANNTG).  go_component nucleus|GO:0005634||IEA  go_process brassinosteroid mediated signaling|GO:0009742|15680330|IGI  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700|15680330|IDA  go_function protein binding|GO:0005515|15680330|IPI  product BIM1; DNA binding / protein binding / transcription factor  note BIM1; FUNCTIONS IN: protein binding, transcription factor activity, DNA binding; INVOLVED IN: brassinosteroid mediated signaling, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BIM2 (BES1-interacting Myc-like protein 2); DNA binding / transcription factor (TAIR:AT1G69010.1); Has 1461 Blast hits to 1454 proteins in 143 species: Archae - 0; Bacteria - 2; Metazoa - 274; Fungi - 55; Plants - 1121; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT5G08130.1p  transcript_id AT5G08130.1  protein_id AT5G08130.1p  transcript_id AT5G08130.1  
At5g08130	chr5:002609535	0.0	C/2609535-2609571,2609302-2609391,2608484-2608885,2608280-2608382,2608059-2608195,2607859-2607973,2607692-2607761,2607499-2607594,2607050-2607387,2606837-2606948,2606655-2606744	AT5G08130.2  CDS  gene_syn BIM1, T22D6.70, T22D6_70  gene BIM1  function Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein involved in brassinosteroid signaling. It synergistically interacts with BES1 to bind to E box sequences (CANNTG).  go_component nucleus|GO:0005634||IEA  go_process brassinosteroid mediated signaling|GO:0009742|15680330|IGI  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700|15680330|IDA  go_function protein binding|GO:0005515|15680330|IPI  product BIM1; DNA binding / protein binding / transcription factor  note BIM1; FUNCTIONS IN: protein binding, transcription factor activity, DNA binding; INVOLVED IN: brassinosteroid mediated signaling, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BIM2 (BES1-interacting Myc-like protein 2); DNA binding / transcription factor (TAIR:AT1G69010.1); Has 1539 Blast hits to 1526 proteins in 153 species: Archae - 0; Bacteria - 2; Metazoa - 316; Fungi - 63; Plants - 1137; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT5G08130.2p  transcript_id AT5G08130.2  protein_id AT5G08130.2p  transcript_id AT5G08130.2  
At5g08139	chr5:002616487	0.0	W/2616487-2617617	AT5G08139.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G60820.1); Has 6373 Blast hits to 6323 proteins in 223 species: Archae - 2; Bacteria - 19; Metazoa - 2188; Fungi - 476; Plants - 2447; Viruses - 45; Other Eukaryotes - 1196 (source: NCBI BLink).  protein_id AT5G08139.1p  transcript_id AT5G08139.1  protein_id AT5G08139.1p  transcript_id AT5G08139.1  
At5g08141	chr5:002619142	0.0	W/2619142-2619555	AT5G08141.1  CDS  gene_syn Arabidopsis thaliana basic leucine-zipper 75, AtbZIP75  gene AtbZIP75  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  product AtbZIP75 (Arabidopsis thaliana basic leucine-zipper 75); DNA binding / transcription factor  note Arabidopsis thaliana basic leucine-zipper 75 (AtbZIP75); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: AtbZIP70 (Arabidopsis thaliana basic leucine-zipper 70); DNA binding / transcription factor (TAIR:AT5G60830.1); Has 332 Blast hits to 332 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 37; Fungi - 0; Plants - 291; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G08141.1p  transcript_id AT5G08141.1  protein_id AT5G08141.1p  transcript_id AT5G08141.1  
At5g08150	chr5:002622164	0.0	C/2622164-2622598	AT5G08150.1  CDS  gene_syn T22D6.90, T22D6_90  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1101 Blast hits to 891 proteins in 136 species: Archae - 2; Bacteria - 37; Metazoa - 322; Fungi - 143; Plants - 81; Viruses - 8; Other Eukaryotes - 508 (source: NCBI BLink).  protein_id AT5G08150.1p  transcript_id AT5G08150.1  protein_id AT5G08150.1p  transcript_id AT5G08150.1  
At5g08160	chr5:002627726	0.0	C/2627726-2627942,2627082-2627224,2626828-2626971,2626487-2626672,2626218-2626342,2625903-2626131	AT5G08160.1  CDS  gene_syn ATPK3  gene ATPK3  function Encodes a serine/threonine protein kinase.  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product ATPK3; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note ATPK3; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G32850.2); Has 32762 Blast hits to 32374 proteins in 1184 species: Archae - 26; Bacteria - 4196; Metazoa - 14068; Fungi - 3679; Plants - 3980; Viruses - 41; Other Eukaryotes - 6772 (source: NCBI BLink).  protein_id AT5G08160.1p  transcript_id AT5G08160.1  protein_id AT5G08160.1p  transcript_id AT5G08160.1  
At5g08160	chr5:002627853	0.0	C/2627853-2627942,2627726-2627744,2627082-2627224,2626828-2626971,2626487-2626672,2626218-2626342,2625903-2626131	AT5G08160.2  CDS  gene_syn ATPK3  gene ATPK3  function Encodes a serine/threonine protein kinase.  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product ATPK3; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note ATPK3; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G32850.2); Has 28439 Blast hits to 28284 proteins in 1044 species: Archae - 22; Bacteria - 3357; Metazoa - 12814; Fungi - 3014; Plants - 3284; Viruses - 39; Other Eukaryotes - 5909 (source: NCBI BLink).  protein_id AT5G08160.2p  transcript_id AT5G08160.2  protein_id AT5G08160.2p  transcript_id AT5G08160.2  
At5g08170	chr5:002630958	0.0	C/2630958-2631047,2630361-2630474,2630155-2630244,2629984-2630068,2629856-2629911,2629672-2629750,2629423-2629557,2629101-2629333,2628863-2629021,2628663-2628773	AT5G08170.1  CDS  gene_syn AGMATINE IMINOHYDROLASE, ATAIH, EMB1873, EMBRYO DEFECTIVE 1873, T22D6.110, T22D6_110  gene EMB1873  go_component cellular_component|GO:0005575||ND  go_process polyamine biosynthetic process|GO:0006596|12782327|IDA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function agmatine deiminase activity|GO:0047632|12782327|IDA  product EMB1873 (EMBRYO DEFECTIVE 1873); agmatine deiminase  note EMBRYO DEFECTIVE 1873 (EMB1873); FUNCTIONS IN: agmatine deiminase activity; INVOLVED IN: embryonic development ending in seed dormancy, polyamine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Agmatine deiminase (InterPro:IPR017754), Peptidyl-arginine deiminase, Porphyromonas-type (InterPro:IPR007466); Has 1681 Blast hits to 1679 proteins in 426 species: Archae - 10; Bacteria - 903; Metazoa - 6; Fungi - 22; Plants - 28; Viruses - 9; Other Eukaryotes - 703 (source: NCBI BLink).  protein_id AT5G08170.1p  transcript_id AT5G08170.1  protein_id AT5G08170.1p  transcript_id AT5G08170.1  
At5g08180	chr5:002633242	0.0	C/2633242-2633374,2633064-2633133,2632097-2632202,2631843-2632004	AT5G08180.1  CDS  gene_syn T22D6.120, T22D6_120  go_component nucleolus|GO:0005730|15496452|IDA  go_process ribosome biogenesis|GO:0042254||IEA  go_function RNA binding|GO:0003723||ISS  product ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein  note ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; FUNCTIONS IN: RNA binding; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group-like nuclear protein (InterPro:IPR002415), Ribosomal protein L7A/RS6 family (InterPro:IPR018492), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038), Ribosomal protein L7Ae conserved site (InterPro:IPR004037); BEST Arabidopsis thaliana protein match is: ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (TAIR:AT5G20160.1); Has 1570 Blast hits to 1570 proteins in 296 species: Archae - 226; Bacteria - 0; Metazoa - 560; Fungi - 291; Plants - 151; Viruses - 0; Other Eukaryotes - 342 (source: NCBI BLink).  protein_id AT5G08180.1p  transcript_id AT5G08180.1  protein_id AT5G08180.1p  transcript_id AT5G08180.1  
At5g08185	chr5:002635134	0.0	C/2635134-2635215,2634820-2634875	AT5G08185.1  CDS  gene_syn MICRORNA 162A, MIR162A  gene MIR162A  function Encodes a microRNA that targets DCL1. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCGAUAAACCUCUGCAUCCAG  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR162A (MICRORNA 162A)  note MICRORNA 162A (MIR162A); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G08185.1p  transcript_id AT5G08185.1  protein_id AT5G08185.1p  transcript_id AT5G08185.1  
At5g08185	chr5:002635134	0.0	C/2635134-2635215,2634974-2635041,2634792-2634872	AT5G08185.2  CDS  gene_syn MICRORNA 162A, MIR162A  gene MIR162A  function Encodes a microRNA that targets DCL1. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCGAUAAACCUCUGCAUCCAG  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR162A (MICRORNA 162A)  note MICRORNA 162A (MIR162A); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G08185.2p  transcript_id AT5G08185.2  protein_id AT5G08185.2p  transcript_id AT5G08185.2  
At5g08185	chr5:002635322	0.0	C/2635322-2635347,2634974-2635046,2634792-2634872	AT5G08185.3  CDS  gene_syn MICRORNA 162A, MIR162A  gene MIR162A  function Encodes a microRNA that targets DCL1. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCGAUAAACCUCUGCAUCCAG  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR162A (MICRORNA 162A)  note MICRORNA 162A (MIR162A); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown.  protein_id AT5G08185.3p  transcript_id AT5G08185.3  protein_id AT5G08185.3p  transcript_id AT5G08185.3  
At5g08190	chr5:002636204	0.0	W/2636204-2636258,2636428-2636517,2636611-2636705,2636788-2636856,2636943-2637125	AT5G08190.1  CDS  gene_syn NF-YB12, NUCLEAR FACTOR Y, SUBUNIT B12, T22D6.130, T22D6_130  gene NF-YB12  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YB12 (NUCLEAR FACTOR Y, SUBUNIT B12); DNA binding / transcription factor  note NUCLEAR FACTOR Y, SUBUNIT B12 (NF-YB12); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13); transcription factor (TAIR:AT5G23090.2); Has 985 Blast hits to 985 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 382; Fungi - 235; Plants - 292; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT5G08190.1p  transcript_id AT5G08190.1  protein_id AT5G08190.1p  transcript_id AT5G08190.1  
At5g08190	chr5:002636204	0.0	W/2636204-2636258,2636428-2636517,2636611-2636705,2636788-2636856,2636946-2637125	AT5G08190.2  CDS  gene_syn NF-YB12, NUCLEAR FACTOR Y, SUBUNIT B12, T22D6.130, T22D6_130  gene NF-YB12  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YB12 (NUCLEAR FACTOR Y, SUBUNIT B12); DNA binding / transcription factor  note NUCLEAR FACTOR Y, SUBUNIT B12 (NF-YB12); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13); transcription factor (TAIR:AT5G23090.4); Has 989 Blast hits to 989 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 383; Fungi - 240; Plants - 292; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT5G08190.2p  transcript_id AT5G08190.2  protein_id AT5G08190.2p  transcript_id AT5G08190.2  
At5g08200	chr5:002638385	0.0	W/2638385-2638678,2639018-2639148,2639704-2640508	AT5G08200.1  CDS  gene_syn F8L15.5  go_component cellular_component|GO:0005575||ND  go_process cell wall macromolecule catabolic process|GO:0016998||ISS  go_function molecular_function|GO:0003674||ND  product peptidoglycan-binding LysM domain-containing protein  note peptidoglycan-binding LysM domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: peptidoglycan-binding LysM domain-containing protein (TAIR:AT5G23130.1); Has 294 Blast hits to 292 proteins in 50 species: Archae - 0; Bacteria - 6; Metazoa - 206; Fungi - 6; Plants - 55; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT5G08200.1p  transcript_id AT5G08200.1  protein_id AT5G08200.1p  transcript_id AT5G08200.1  
At5g08210	chr5:002641426	0.0	C/2641426-2641674	AT5G08210.1  miRNA  gene_syn F8L15.6, MICRORNA 834A, MIR834A  gene MIR834A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UGGUAGCAGUAGCGGUGGUAA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR834A (MICRORNA 834A); miRNA  transcript_id AT5G08210.1  
At5g08220	chr5:002642902	0.0	C/2642902-2642991,2642501-2642571,2642280-2642334	AT5G08220.1  CDS  gene_syn F8L15.7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G08220.1p  transcript_id AT5G08220.1  protein_id AT5G08220.1p  transcript_id AT5G08220.1  
At5g08230	chr5:002649678	0.0	C/2649678-2649788,2649236-2649312,2647087-2649018,2646485-2646998,2646146-2646254,2645889-2646001,2645620-2645807,2644809-2645442,2644228-2644723,2643998-2644090,2643846-2643916	AT5G08230.1  CDS  gene_syn F8L15.8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product PWWP domain-containing protein  note PWWP domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), Regulation of nuclear pre-mRNA protein (InterPro:IPR006569), PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: HUA2 (ENHANCER OF AG-4 2); transcription factor (TAIR:AT5G23150.1); Has 43497 Blast hits to 22097 proteins in 1112 species: Archae - 78; Bacteria - 6112; Metazoa - 16226; Fungi - 4736; Plants - 8133; Viruses - 1879; Other Eukaryotes - 6333 (source: NCBI BLink).  protein_id AT5G08230.1p  transcript_id AT5G08230.1  protein_id AT5G08230.1p  transcript_id AT5G08230.1  
At5g08240	chr5:002651983	0.0	C/2651983-2652336,2651382-2651804	AT5G08240.1  CDS  gene_syn F8L15.11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23160.1); Has 48 Blast hits to 48 proteins in 6 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G08240.1p  transcript_id AT5G08240.1  protein_id AT5G08240.1p  transcript_id AT5G08240.1  
At5g08250	chr5:002654531	0.0	C/2654531-2655595,2653766-2654167	AT5G08250.1  CDS  gene_syn F8L15.12  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component cellular_component|GO:0005575||ND  go_function oxygen binding|GO:0019825||ISS  product cytochrome P450 family protein  note cytochrome P450 family protein; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP86B1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT5G23190.1); Has 19626 Blast hits to 19569 proteins in 1041 species: Archae - 19; Bacteria - 1421; Metazoa - 8932; Fungi - 3724; Plants - 4759; Viruses - 3; Other Eukaryotes - 768 (source: NCBI BLink).  protein_id AT5G08250.1p  transcript_id AT5G08250.1  protein_id AT5G08250.1p  transcript_id AT5G08250.1  
At5g08260	chr5:002657236	0.0	W/2657236-2657509,2659435-2659542,2659644-2659832,2659962-2660050,2660160-2660453,2660557-2660693,2660824-2660916,2661014-2661272	AT5G08260.1  CDS  gene_syn F8L15.17, scpl35, serine carboxypeptidase-like 35  gene scpl35  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl35 (serine carboxypeptidase-like 35); serine-type carboxypeptidase  note serine carboxypeptidase-like 35 (scpl35); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: SCPL34; serine-type carboxypeptidase (TAIR:AT5G23210.1); Has 2548 Blast hits to 2503 proteins in 271 species: Archae - 0; Bacteria - 119; Metazoa - 569; Fungi - 567; Plants - 966; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink).  protein_id AT5G08260.1p  transcript_id AT5G08260.1  protein_id AT5G08260.1p  transcript_id AT5G08260.1  
At5g08270	chr5:002661747	0.0	W/2661747-2661791,2662105-2662199,2662373-2662614,2662704-2663482	AT5G08270.1  CDS  gene_syn F8L15.1, F8L15_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23200.1); Has 51 Blast hits to 51 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 24; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G08270.1p  transcript_id AT5G08270.1  protein_id AT5G08270.1p  transcript_id AT5G08270.1  
At5g08280	chr5:002665352	0.0	C/2665352-2665596,2664572-2664977,2664264-2664470,2663971-2664148,2663763-2663875	AT5G08280.1  CDS  gene_syn F8L15.10, F8L15_10, HEMC, HYDROXYMETHYLBILANE SYNTHASE, PORPHOBILINOGEN DEAMINASE  gene HEMC  function Encodes a protein with porphobilinogen deaminase activity. This protein is targeted to the chloroplast.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_component chloroplast|GO:0009507|8000000|IDA  go_process porphyrin biosynthetic process|GO:0006779|8000000|TAS  go_process chlorophyll biosynthetic process|GO:0015995|8192681|TAS  go_function hydroxymethylbilane synthase activity|GO:0004418|8192681|IDA  product HEMC (HYDROXYMETHYLBILANE SYNTHASE); hydroxymethylbilane synthase  note HYDROXYMETHYLBILANE SYNTHASE (HEMC); FUNCTIONS IN: hydroxymethylbilane synthase activity; INVOLVED IN: chlorophyll biosynthetic process, defense response to bacterium, porphyrin biosynthetic process; LOCATED IN: apoplast, chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 5340 Blast hits to 5327 proteins in 1310 species: Archae - 132; Bacteria - 2338; Metazoa - 139; Fungi - 118; Plants - 43; Viruses - 0; Other Eukaryotes - 2570 (source: NCBI BLink).  protein_id AT5G08280.1p  transcript_id AT5G08280.1  protein_id AT5G08280.1p  transcript_id AT5G08280.1  
At5g08290	chr5:002666043	0.0	W/2666043-2666162,2666628-2666936	AT5G08290.1  CDS  gene_syn YLS8  gene YLS8  function Encodes Dim1 homolog.  go_component nucleus|GO:0005634|15610358|IDA  go_component spliceosome|GO:0005681||ISS  go_component cytoplasm|GO:0005737|15610358|IDA  go_process mitosis|GO:0007067||ISS  go_process response to ethylene stimulus|GO:0009723|11230571|IEP  go_process leaf senescence|GO:0010150|11230571|IEP  go_function catalytic activity|GO:0003824||ISS  product YLS8; catalytic  note YLS8; FUNCTIONS IN: catalytic activity; INVOLVED IN: response to ethylene stimulus, leaf senescence, mitosis; LOCATED IN: nucleus, spliceosome, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), mRNA splicing factor, thioredoxin-like U5 snRNP (InterPro:IPR004123), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: catalytic (TAIR:AT3G24730.1); Has 399 Blast hits to 399 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 176; Fungi - 95; Plants - 61; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT5G08290.1p  transcript_id AT5G08290.1  protein_id AT5G08290.1p  transcript_id AT5G08290.1  
At5g08300	chr5:002667579	0.0	W/2667579-2667830,2668048-2668257,2668390-2668560,2668834-2668957,2669195-2669256,2669358-2669439,2669530-2669672	AT5G08300.1  CDS  gene_syn F8L15.30, F8L15_30  go_component cell wall|GO:0005618|16287169|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function metal ion binding|GO:0046872|12606038|IDA  go_component mitochondrion|GO:0005739|11743114|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|12606038|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process metabolic process|GO:0008152||ISS  go_function succinate-CoA ligase (GDP-forming) activity|GO:0004776||ISS  product succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative  note succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative; FUNCTIONS IN: succinate-CoA ligase (GDP-forming) activity, metal ion binding; INVOLVED IN: response to cadmium ion, metabolic process; LOCATED IN: mitochondrion, cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Succinyl-CoA ligase, alpha subunit (InterPro:IPR005810), ATP-citrate lyase/succinyl-CoA ligase (InterPro:IPR005811), NAD(P)-binding (InterPro:IPR016040), CoA-binding (InterPro:IPR003781), ATP-citrate lyase/succinyl-CoA ligase, active site (InterPro:IPR017440), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative (TAIR:AT5G23250.1); Has 7223 Blast hits to 7222 proteins in 1236 species: Archae - 218; Bacteria - 2742; Metazoa - 383; Fungi - 188; Plants - 87; Viruses - 0; Other Eukaryotes - 3605 (source: NCBI BLink).  protein_id AT5G08300.1p  transcript_id AT5G08300.1  protein_id AT5G08300.1p  transcript_id AT5G08300.1  
At5g08310	chr5:002672851	0.0	C/2672851-2675254,2670134-2671572	AT5G08310.1  CDS  gene_syn F8L15.40, F8L15_40  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G06540.1); Has 28943 Blast hits to 5852 proteins in 175 species: Archae - 3; Bacteria - 8; Metazoa - 285; Fungi - 340; Plants - 27269; Viruses - 0; Other Eukaryotes - 1038 (source: NCBI BLink).  protein_id AT5G08310.1p  transcript_id AT5G08310.1  protein_id AT5G08310.1p  transcript_id AT5G08310.1  
At5g08315	chr5:002676520	0.0	C/2676520-2676580,2676177-2676364	AT5G08315.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08055.1); Has 11 Blast hits to 11 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G08315.1p  transcript_id AT5G08315.1  protein_id AT5G08315.1p  transcript_id AT5G08315.1  
At5g08320	chr5:002677153	0.0	W/2677153-2677183,2677595-2677760,2678348-2678603	AT5G08320.1  CDS  gene_syn F8L15.50, F8L15_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 104 Blast hits to 104 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 63; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT5G08320.1p  transcript_id AT5G08320.1  protein_id AT5G08320.1p  transcript_id AT5G08320.1  
At5g08330	chr5:002680828	0.0	W/2680828-2681547	AT5G08330.1  CDS  gene_syn F8L15.60, F8L15_60  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product TCP family transcription factor, putative  note TCP family transcription factor, putative; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor, putative (TAIR:AT5G23280.1); Has 741 Blast hits to 732 proteins in 146 species: Archae - 0; Bacteria - 2; Metazoa - 30; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G08330.1p  transcript_id AT5G08330.1  protein_id AT5G08330.1p  transcript_id AT5G08330.1  
At5g08335	chr5:002683012	0.0	W/2683012-2683605	AT5G08335.1  CDS  gene_syn ARABIDOPSIS THALIANA ISOPRENYL CYSTEINE METHYLTRANSFERASE B, ATICMTB, ATSTE14B, ICMTB, ISOPRENYL CYSTEINE METHYLTRANSFERASE B  gene ATSTE14B  function Encodes an isoprenyl cysteine methylatransferase (ICMT) involved in the post-translational processing of proteins that have a C-terminal CaaX box. This protein appears to have higher catalytic activity and a higher transcript expression level than the other ICMT present in Arabidopsis (At5g23320). Analysis of ICMT RNAi lines suggests that this protein is involved in flower and stem development.  go_component endoplasmic reticulum|GO:0005783|18641086|IDA  go_process C-terminal protein amino acid methylation|GO:0006481||ISS  go_process negative regulation of abscisic acid mediated signaling|GO:0009788|12472689|NAS  go_process flower development|GO:0009908|18641086|IMP  go_process shoot development|GO:0048367|18641086|IMP  go_function protein-S-isoprenylcysteine O-methyltransferase activity|GO:0004671|12472689|IDA  go_function protein-S-isoprenylcysteine O-methyltransferase activity|GO:0004671|12472689|IGI  go_function protein-S-isoprenylcysteine O-methyltransferase activity|GO:0004671||ISS  product ATSTE14B; protein-S-isoprenylcysteine O-methyltransferase  note ATSTE14B; FUNCTIONS IN: protein-S-isoprenylcysteine O-methyltransferase activity; INVOLVED IN: flower development, shoot development, negative regulation of abscisic acid mediated signaling, C-terminal protein amino acid methylation; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isoprenylcysteine carboxyl methyltransferase (InterPro:IPR007269); BEST Arabidopsis thaliana protein match is: ATSTE14A (ARABIDOPSIS HOMOLOG OF YEAST STE14 A); carboxyl-O-methyltransferase/ protein-S-isoprenylcysteine O-methyltransferase (TAIR:AT5G23320.1); Has 1093 Blast hits to 1093 proteins in 359 species: Archae - 28; Bacteria - 533; Metazoa - 105; Fungi - 116; Plants - 36; Viruses - 0; Other Eukaryotes - 275 (source: NCBI BLink).  protein_id AT5G08335.1p  transcript_id AT5G08335.1  protein_id AT5G08335.1p  transcript_id AT5G08335.1  
At5g08340	chr5:002683901	0.0	W/2683901-2684145,2684289-2684341,2684530-2684665,2684841-2685016,2685111-2685541,2685668-2685682	AT5G08340.2  CDS  gene_syn F8L15.70, F8L15_70  go_process riboflavin biosynthetic process|GO:0009231||IEA  go_function FMN adenylyltransferase activity|GO:0003919||IEA  go_component cellular_component|GO:0005575||ND  product riboflavin biosynthesis protein-related  note riboflavin biosynthesis protein-related; FUNCTIONS IN: FMN adenylyltransferase activity; INVOLVED IN: riboflavin biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), FAD synthetase (InterPro:IPR015864); BEST Arabidopsis thaliana protein match is: riboflavin biosynthesis protein-related (TAIR:AT5G23330.1); Has 2214 Blast hits to 2214 proteins in 824 species: Archae - 0; Bacteria - 1589; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 599 (source: NCBI BLink).  protein_id AT5G08340.2p  transcript_id AT5G08340.2  protein_id AT5G08340.2p  transcript_id AT5G08340.2  
At5g08340	chr5:002683901	0.0	W/2683901-2684145,2684289-2684341,2684530-2684665,2684841-2685016,2685111-2685604	AT5G08340.1  CDS  gene_syn F8L15.70, F8L15_70  go_process riboflavin biosynthetic process|GO:0009231||IEA  go_function FMN adenylyltransferase activity|GO:0003919||IEA  go_component cellular_component|GO:0005575||ND  product riboflavin biosynthesis protein-related  note riboflavin biosynthesis protein-related; FUNCTIONS IN: FMN adenylyltransferase activity; INVOLVED IN: riboflavin biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), FAD synthetase (InterPro:IPR015864); BEST Arabidopsis thaliana protein match is: riboflavin biosynthesis protein-related (TAIR:AT5G23330.1); Has 2221 Blast hits to 2221 proteins in 827 species: Archae - 0; Bacteria - 1595; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 600 (source: NCBI BLink).  protein_id AT5G08340.1p  transcript_id AT5G08340.1  protein_id AT5G08340.1p  transcript_id AT5G08340.1  
At5g08350	chr5:002687043	0.0	C/2687043-2687175,2686417-2686952	AT5G08350.1  CDS  gene_syn F8L15.80, F8L15_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product GRAM domain-containing protein / ABA-responsive protein-related  note GRAM domain-containing protein / ABA-responsive protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182); BEST Arabidopsis thaliana protein match is: GRAM domain-containing protein / ABA-responsive protein-related (TAIR:AT5G23370.1); Has 196 Blast hits to 196 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 196; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G08350.1p  transcript_id AT5G08350.1  protein_id AT5G08350.1p  transcript_id AT5G08350.1  
At5g08360	chr5:002689743	0.0	W/2689743-2689798,2689910-2689994,2690089-2690174,2690332-2690414,2690508-2690758	AT5G08360.1  CDS  gene_syn F8L15.90, F8L15_90  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23380.1); Has 132 Blast hits to 132 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G08360.1p  transcript_id AT5G08360.1  protein_id AT5G08360.1p  transcript_id AT5G08360.1  
At5g08370	chr5:002693314	0.0	C/2693314-2693441,2693167-2693225,2693020-2693076,2692889-2692923,2692708-2692811,2692540-2692615,2692333-2692457,2692161-2692244,2692013-2692077,2691848-2691930,2691663-2691753,2691523-2691572,2691306-2691446,2691116-2691208	AT5G08370.1  CDS  gene_syn Arabidopsis thaliana ALPHA-GALACTOSIDASE 2, AtAGAL2, F8L15.100, F8L15_100  gene AtAGAL2  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_component plant-type cell wall|GO:0009505|16845526|IDA  go_process positive regulation of flower development|GO:0009911|16845526|IMP  go_process leaf morphogenesis|GO:0009965|16845526|IMP  go_function alpha-galactosidase activity|GO:0004557||ISS  product AtAGAL2 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 2); alpha-galactosidase/ catalytic/ hydrolase, hydrolyzing O-glycosyl compounds  note Arabidopsis thaliana ALPHA-GALACTOSIDASE 2 (AtAGAL2); FUNCTIONS IN: alpha-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: positive regulation of flower development, leaf morphogenesis; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Glycoside hydrolase, family 27 (InterPro:IPR002241), Glycoside hydrolase, clan GH-D (InterPro:IPR000111), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: AtAGAL1 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 1); alpha-galactosidase/ catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT5G08380.1); Has 886 Blast hits to 883 proteins in 193 species: Archae - 0; Bacteria - 201; Metazoa - 241; Fungi - 191; Plants - 105; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink).  protein_id AT5G08370.1p  transcript_id AT5G08370.1  protein_id AT5G08370.1p  transcript_id AT5G08370.1  
At5g08370	chr5:002693439	0.0	C/2693439-2693441,2693314-2693360,2693167-2693225,2693020-2693076,2692889-2692923,2692708-2692811,2692540-2692615,2692333-2692457,2692161-2692244,2692013-2692077,2691848-2691930,2691663-2691753,2691523-2691572,2691306-2691446,2691116-2691208	AT5G08370.2  CDS  gene_syn Arabidopsis thaliana ALPHA-GALACTOSIDASE 2, AtAGAL2, F8L15.100, F8L15_100  gene AtAGAL2  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_component plant-type cell wall|GO:0009505|16845526|IDA  go_process positive regulation of flower development|GO:0009911|16845526|IMP  go_process leaf morphogenesis|GO:0009965|16845526|IMP  go_function alpha-galactosidase activity|GO:0004557||ISS  product AtAGAL2 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 2); alpha-galactosidase/ catalytic/ hydrolase, hydrolyzing O-glycosyl compounds  note Arabidopsis thaliana ALPHA-GALACTOSIDASE 2 (AtAGAL2); FUNCTIONS IN: alpha-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: positive regulation of flower development, leaf morphogenesis; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Glycoside hydrolase, family 27 (InterPro:IPR002241), Glycoside hydrolase, clan GH-D (InterPro:IPR000111), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: AtAGAL1 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 1); alpha-galactosidase/ catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT5G08380.1); Has 886 Blast hits to 883 proteins in 193 species: Archae - 0; Bacteria - 201; Metazoa - 241; Fungi - 191; Plants - 105; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink).  protein_id AT5G08370.2p  transcript_id AT5G08370.2  protein_id AT5G08370.2p  transcript_id AT5G08370.2  
At5g08380	chr5:002697447	0.0	C/2697447-2697616,2697133-2697191,2696976-2697032,2696779-2696813,2696587-2696690,2696415-2696490,2696268-2696326,2696122-2696187,2695940-2696023,2695794-2695858,2695604-2695686,2695426-2695516,2695288-2695337,2695049-2695189,2694851-2694943	AT5G08380.1  CDS  gene_syn Arabidopsis thaliana ALPHA-GALACTOSIDASE 1, AtAGAL1, F8L15.110, F8L15_110  gene AtAGAL1  go_component cell wall|GO:0005618|15593128|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process lactose catabolic process|GO:0005990||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_component apoplast|GO:0048046|15593128|IDA  go_function alpha-galactosidase activity|GO:0004557||ISS  product AtAGAL1 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 1); alpha-galactosidase/ catalytic/ hydrolase, hydrolyzing O-glycosyl compounds  note Arabidopsis thaliana ALPHA-GALACTOSIDASE 1 (AtAGAL1); FUNCTIONS IN: alpha-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process, metabolic process, lactose catabolic process; LOCATED IN: apoplast, cell wall, plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Glycoside hydrolase, family 27 (InterPro:IPR002241), Glycoside hydrolase, clan GH-D (InterPro:IPR000111), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: AtAGAL2 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 2); alpha-galactosidase/ catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT5G08370.2); Has 933 Blast hits to 930 proteins in 207 species: Archae - 2; Bacteria - 240; Metazoa - 241; Fungi - 192; Plants - 105; Viruses - 0; Other Eukaryotes - 153 (source: NCBI BLink).  protein_id AT5G08380.1p  transcript_id AT5G08380.1  protein_id AT5G08380.1p  transcript_id AT5G08380.1  
At5g08391	chr5:002699357	0.0	W/2699357-2699566	AT5G08391.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27030.1); Has 168 Blast hits to 167 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 168; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G08391.1p  transcript_id AT5G08391.1  protein_id AT5G08391.1p  transcript_id AT5G08391.1  
At5g08390	chr5:002701448	0.0	W/2701448-2701475,2701751-2701881,2702028-2702145,2702261-2702487,2702933-2703035,2703360-2703430,2703527-2703601,2703745-2703888,2703992-2704334,2704445-2704966,2705266-2705325,2705416-2705537,2705774-2705908,2706035-2706109,2706201-2706313,2706452-2706568,2706659-2706727,2706844-2706910	AT5G08390.1  CDS  gene_syn F8L15.120, F8L15_120  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G23430.1); Has 84267 Blast hits to 30722 proteins in 748 species: Archae - 68; Bacteria - 7813; Metazoa - 39755; Fungi - 16342; Plants - 8110; Viruses - 6; Other Eukaryotes - 12173 (source: NCBI BLink).  protein_id AT5G08390.1p  transcript_id AT5G08390.1  protein_id AT5G08390.1p  transcript_id AT5G08390.1  
At5g08400	chr5:002708432	0.0	C/2708432-2708911,2708197-2708282,2707985-2708063,2707821-2707880,2707590-2707711,2707427-2707498,2707225-2707327	AT5G08400.1  CDS  gene_syn F8L15.130, F8L15_130  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29400.1); Has 258 Blast hits to 258 proteins in 63 species: Archae - 0; Bacteria - 100; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).  protein_id AT5G08400.1p  transcript_id AT5G08400.1  protein_id AT5G08400.1p  transcript_id AT5G08400.1  
At5g08400	chr5:002708619	0.0	C/2708619-2708911,2708432-2708519,2708197-2708282,2707985-2708063,2707821-2707880,2707590-2707711,2707427-2707498,2707225-2707327	AT5G08400.2  CDS  gene_syn F8L15.130, F8L15_130  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29400.1); Has 258 Blast hits to 258 proteins in 63 species: Archae - 0; Bacteria - 100; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).  protein_id AT5G08400.2p  transcript_id AT5G08400.2  protein_id AT5G08400.2p  transcript_id AT5G08400.2  
At5g08410	chr5:002709974	0.0	C/2709974-2710528	AT5G08410.1  CDS  gene_syn F8L15.14, FTRA2, ferredoxin/thioredoxin reductase subunit A (variable subunit) 2  gene FTRA2  go_component chloroplast|GO:0009507|18431481|IDA  go_process lipoate biosynthetic process|GO:0009107||IEA  go_process photosynthesis|GO:0015979||IEA  go_function catalytic activity|GO:0003824||IEA  go_function ferredoxin reductase activity|GO:0008937||IEA  go_function lipoate synthase activity|GO:0016992||IEA  go_process photosynthesis, light reaction|GO:0019684||ISS  go_function ferredoxin:thioredoxin reductase activity|GO:0030385||ISS  product FTRA2 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 2); catalytic/ ferredoxin reductase/ ferredoxin:thioredoxin reductase/ lipoate synthase  note ferredoxin/thioredoxin reductase subunit A (variable subunit) 2 (FTRA2); FUNCTIONS IN: ferredoxin:thioredoxin reductase activity, lipoate synthase activity, catalytic activity, ferredoxin reductase activity; INVOLVED IN: photosynthesis, light reaction, lipoate biosynthetic process, photosynthesis; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipoate synthase (InterPro:IPR003698), Ferredoxin thioredoxin reductase, alpha chain (InterPro:IPR004207), Electron transport accessory protein (InterPro:IPR008990); BEST Arabidopsis thaliana protein match is: FTRA1 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 1); catalytic/ ferredoxin reductase/ ferredoxin:thioredoxin reductase/ lipoate synthase (TAIR:AT5G23440.1); Has 107 Blast hits to 107 proteins in 41 species: Archae - 0; Bacteria - 60; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G08410.1p  transcript_id AT5G08410.1  protein_id AT5G08410.1p  transcript_id AT5G08410.1  
At5g08415	chr5:002712691	0.0	C/2712691-2713101,2712361-2712524,2712056-2712146,2711781-2711938,2711397-2711568,2711164-2711274,2710983-2711060	AT5G08415.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process metabolic process|GO:0008152||IEA  go_process lipoate biosynthetic process|GO:0009107||IEA  go_function catalytic activity|GO:0003824||IEA  go_function lipoate synthase activity|GO:0016992||IEA  go_function iron-sulfur cluster binding|GO:0051536||IEA  go_process lipoic acid biosynthetic process|GO:0009105||ISS  go_function lipoic acid synthase activity|GO:0017140||ISS  product lipoic acid synthase family protein  note lipoic acid synthase family protein; FUNCTIONS IN: lipoic acid synthase activity, iron-sulfur cluster binding, lipoate synthase activity, catalytic activity; INVOLVED IN: lipoic acid biosynthetic process, lipoate biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Lipoate synthase (InterPro:IPR003698), Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Radical SAM (InterPro:IPR007197); BEST Arabidopsis thaliana protein match is: LIP1 (LIPOIC ACID SYNTHASE 1); lipoic acid synthase (TAIR:AT2G20860.1); Has 5746 Blast hits to 5746 proteins in 1192 species: Archae - 36; Bacteria - 2422; Metazoa - 113; Fungi - 91; Plants - 53; Viruses - 0; Other Eukaryotes - 3031 (source: NCBI BLink).  protein_id AT5G08415.1p  transcript_id AT5G08415.1  protein_id AT5G08415.1p  transcript_id AT5G08415.1  
At5g08420	chr5:002713555	0.0	W/2713555-2713833,2713956-2714066,2714185-2714253,2714506-2714562,2714690-2714728,2714814-2714918,2715040-2715122,2715227-2715308,2715514-2715657,2715763-2715843,2715939-2716064	AT5G08420.1  CDS  gene_syn F8L15.150, F8L15_150  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product RNA binding  note RNA binding; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087); Has 2056 Blast hits to 1575 proteins in 229 species: Archae - 85; Bacteria - 30; Metazoa - 600; Fungi - 242; Plants - 75; Viruses - 0; Other Eukaryotes - 1024 (source: NCBI BLink).  protein_id AT5G08420.1p  transcript_id AT5G08420.1  protein_id AT5G08420.1p  transcript_id AT5G08420.1  
At5g08430	chr5:002716974	0.0	W/2716974-2717592,2717751-2717851,2718069-2718128,2718316-2718366,2718564-2718634,2718762-2719093,2719668-2720095	AT5G08430.1  CDS  gene_syn F8L15.160, F8L15_160  go_component nucleus|GO:0005634||IEA  go_process transcription initiation|GO:0006352||IEA  go_process histone modification|GO:0016570||IEA  go_function DNA binding|GO:0003677||IEA  product SWIB complex BAF60b domain-containing protein / plus-3 domain-containing protein / GYF domain-containing protein  note SWIB complex BAF60b domain-containing protein / plus-3 domain-containing protein / GYF domain-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: histone modification, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 (InterPro:IPR003121), Plus-3 domain, subgroup (InterPro:IPR018144), Plus-3 (InterPro:IPR004343), GYF (InterPro:IPR003169); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT5G23480.1); Has 234 Blast hits to 221 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 15; Plants - 101; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT5G08430.1p  transcript_id AT5G08430.1  protein_id AT5G08430.1p  transcript_id AT5G08430.1  
At5g08440	chr5:002721037	0.0	W/2721037-2721189,2721548-2721610,2721805-2722139,2722267-2722366,2722445-2722522,2722614-2722673,2722788-2722892,2723118-2723228,2723568-2723609,2723751-2723864,2723942-2724018,2724389-2724639,2724730-2724851,2724939-2724981,2725181-2725272,2725463-2725511,2725912-2725982,2726112-2726225,2726342-2726445,2726728-2726773,2726920-2726970	AT5G08440.1  CDS  gene_syn F8L15.170, F8L15_170  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23490.1); Has 88 Blast hits to 87 proteins in 23 species: Archae - 0; Bacteria - 4; Metazoa - 18; Fungi - 6; Plants - 50; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G08440.1p  transcript_id AT5G08440.1  protein_id AT5G08440.1p  transcript_id AT5G08440.1  
At5g08450	chr5:002730906	0.0	C/2730906-2732572,2730454-2730461,2729852-2730027,2729612-2729672,2729430-2729528,2729193-2729287,2728949-2729062,2728745-2728812,2728496-2728606,2728174-2728420,2727970-2728080	AT5G08450.1  CDS  gene_syn F8L15.180, F8L15_180  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylation protein Rxt3 (InterPro:IPR013951); Has 32702 Blast hits to 18312 proteins in 878 species: Archae - 45; Bacteria - 1760; Metazoa - 16233; Fungi - 3347; Plants - 1326; Viruses - 208; Other Eukaryotes - 9783 (source: NCBI BLink).  protein_id AT5G08450.1p  transcript_id AT5G08450.1  protein_id AT5G08450.1p  transcript_id AT5G08450.1  
At5g08450	chr5:002730906	0.0	C/2730906-2732572,2730454-2730461,2729852-2730027,2729612-2729672,2729430-2729528,2729193-2729287,2728949-2729062,2728745-2728812,2728496-2728606,2728174-2728420,2727970-2728080	AT5G08450.2  CDS  gene_syn F8L15.180, F8L15_180  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylation protein Rxt3 (InterPro:IPR013951); Has 32702 Blast hits to 18312 proteins in 878 species: Archae - 45; Bacteria - 1760; Metazoa - 16233; Fungi - 3347; Plants - 1326; Viruses - 208; Other Eukaryotes - 9783 (source: NCBI BLink).  protein_id AT5G08450.2p  transcript_id AT5G08450.2  protein_id AT5G08450.2p  transcript_id AT5G08450.2  
At5g08450	chr5:002730906	0.0	C/2730906-2732572,2730454-2730461,2729852-2730027,2729612-2729672,2729430-2729528,2729193-2729287,2728949-2729062,2728745-2728812,2728496-2728606,2728174-2728420,2727970-2728080	AT5G08450.3  CDS  gene_syn F8L15.180, F8L15_180  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylation protein Rxt3 (InterPro:IPR013951); Has 32702 Blast hits to 18312 proteins in 878 species: Archae - 45; Bacteria - 1760; Metazoa - 16233; Fungi - 3347; Plants - 1326; Viruses - 208; Other Eukaryotes - 9783 (source: NCBI BLink).  protein_id AT5G08450.3p  transcript_id AT5G08450.3  protein_id AT5G08450.3p  transcript_id AT5G08450.3  
At5g08460	chr5:002733220	0.0	W/2733220-2733520,2733705-2733832,2734336-2734578,2734746-2735010,2735131-2735351	AT5G08460.1  CDS  gene_syn F8L15.13  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT1G71250.1); Has 1681 Blast hits to 1663 proteins in 100 species: Archae - 0; Bacteria - 105; Metazoa - 1; Fungi - 5; Plants - 1555; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT5G08460.1p  transcript_id AT5G08460.1  protein_id AT5G08460.1p  transcript_id AT5G08460.1  
At5g08470	chr5:002735925	0.0	W/2735925-2736158,2736278-2736451,2736526-2736625,2736822-2737292,2737625-2738359,2738655-2738746,2739062-2739135,2739256-2739478,2739819-2739912,2740007-2740161,2740388-2740609,2740974-2741174,2741494-2741619,2741699-2741760,2741977-2742094,2742327-2742599,2742693-2742731	AT5G08470.1  CDS  gene_syn F8L15.15, PEX1, peroxisome 1  gene PEX1  function an AAA-ATPase that is the probable Arabidopsis orthologue of one of the AAA-ATPases involved in peroxisome biogenesis in yeasts and mammals.  go_component peroxisome|GO:0005777||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process fatty acid beta-oxidation|GO:0006635|17478547|IMP  go_process response to stress|GO:0006950|11118212|IEP  go_process protein import into peroxisome matrix|GO:0016558|17478547|IMP  go_function ATPase activity|GO:0016887||ISS  product PEX1 (peroxisome 1); ATP binding / ATPase/ binding / nucleoside-triphosphatase/ nucleotide binding / protein binding  note peroxisome 1 (PEX1); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein import into peroxisome matrix, fatty acid beta-oxidation, response to stress; LOCATED IN: peroxisome; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Peroxisome biogenesis factor 1, N-terminal (InterPro:IPR015342); BEST Arabidopsis thaliana protein match is: cell division cycle protein 48, putative / CDC48, putative (TAIR:AT5G03340.1); Has 31161 Blast hits to 18296 proteins in 1718 species: Archae - 1111; Bacteria - 8991; Metazoa - 6264; Fungi - 3701; Plants - 2238; Viruses - 20; Other Eukaryotes - 8836 (source: NCBI BLink).  protein_id AT5G08470.1p  transcript_id AT5G08470.1  protein_id AT5G08470.1p  transcript_id AT5G08470.1  
At5g08480	chr5:002744486	0.0	W/2744486-2744747,2744841-2745007	AT5G08480.1  CDS  gene_syn F8L15.9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product VQ motif-containing protein  note VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); Has 71 Blast hits to 69 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G08480.1p  transcript_id AT5G08480.1  protein_id AT5G08480.1p  transcript_id AT5G08480.1  
At5g08480	chr5:002744486	0.0	W/2744486-2745007	AT5G08480.2  CDS  gene_syn F8L15.9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product VQ motif-containing protein  note VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); Has 71 Blast hits to 71 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G08480.2p  transcript_id AT5G08480.2  protein_id AT5G08480.2p  transcript_id AT5G08480.2  
At5g08490	chr5:002745208	0.0	C/2745208-2747757	AT5G08490.1  CDS  gene_syn F8L15.18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G21300.1); Has 16557 Blast hits to 4658 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 16; Plants - 16315; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).  protein_id AT5G08490.1p  transcript_id AT5G08490.1  protein_id AT5G08490.1p  transcript_id AT5G08490.1  
At5g08500	chr5:002748261	0.0	W/2748261-2748479,2748661-2748807,2748893-2749007,2749108-2749202,2749312-2749415,2749541-2749578,2749947-2750182,2750351-2750444,2750525-2750715,2750859-2751078,2751172-2751339,2751445-2751590	AT5G08500.1  CDS  gene_syn F8L15.19  go_process biological_process|GO:0008150||ND  product transmembrane CLPTM1 family protein  note transmembrane CLPTM1 family protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cleft lip and palate transmembrane 1 (InterPro:IPR008429); BEST Arabidopsis thaliana protein match is: transmembrane protein, putative (TAIR:AT5G23575.1); Has 380 Blast hits to 380 proteins in 129 species: Archae - 0; Bacteria - 0; Metazoa - 213; Fungi - 48; Plants - 26; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT5G08500.1p  transcript_id AT5G08500.1  protein_id AT5G08500.1p  transcript_id AT5G08500.1  
At5g08505	chr5:002752260	0.0	C/2752260-2752356,2752025-2752167	AT5G08505.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15757.1); Has 15 Blast hits to 15 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G08505.1p  transcript_id AT5G08505.1  protein_id AT5G08505.1p  transcript_id AT5G08505.1  
At5g08510	chr5:002753099	0.0	W/2753099-2754025,2754123-2754731	AT5G08510.1  CDS  gene_syn F8L15.21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G44230.1); Has 13705 Blast hits to 5042 proteins in 161 species: Archae - 2; Bacteria - 2; Metazoa - 44; Fungi - 66; Plants - 13317; Viruses - 0; Other Eukaryotes - 274 (source: NCBI BLink).  protein_id AT5G08510.1p  transcript_id AT5G08510.1  protein_id AT5G08510.1p  transcript_id AT5G08510.1  
At5g08520	chr5:002757365	0.0	C/2757365-2757741,2755470-2755989	AT5G08520.1  CDS  gene_syn F8L15.2  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT5G23650.1); Has 1430 Blast hits to 1399 proteins in 120 species: Archae - 0; Bacteria - 4; Metazoa - 98; Fungi - 50; Plants - 802; Viruses - 0; Other Eukaryotes - 476 (source: NCBI BLink).  protein_id AT5G08520.1p  transcript_id AT5G08520.1  protein_id AT5G08520.1p  transcript_id AT5G08520.1  
At5g08530	chr5:002761724	0.0	C/2761724-2761726,2759848-2761305	AT5G08530.1  CDS  gene_syn 51 kDa subunit of complex I, CI51, MAH20.9, MAH20_9  gene CI51  go_function NADH dehydrogenase (ubiquinone) activity|GO:0008137||IEA  go_function FMN binding|GO:0010181||IEA  go_function oxidoreductase activity, acting on NADH or NADPH|GO:0016651||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_function 4 iron, 4 sulfur cluster binding|GO:0051539||IEA  go_component mitochondrion|GO:0005739|12837548|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process mitochondrial electron transport, NADH to ubiquinone|GO:0006120||ISS  go_function NADH dehydrogenase (ubiquinone) activity|GO:0008137||ISS  product CI51 (51 kDa subunit of complex I); 4 iron, 4 sulfur cluster binding / FMN binding / NAD or NADH binding / NADH dehydrogenase (ubiquinone)/ oxidoreductase, acting on NADH or NADPH  note 51 kDa subunit of complex I (CI51); FUNCTIONS IN: 4 iron, 4 sulfur cluster binding, NAD or NADH binding, FMN binding, NADH dehydrogenase (ubiquinone) activity, oxidoreductase activity, acting on NADH or NADPH; INVOLVED IN: mitochondrial electron transport, NADH to ubiquinone; LOCATED IN: mitochondrion, respiratory chain complex I; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NADH-ubiquinone oxidoreductase, 51 kDa subunit, conserved site (InterPro:IPR001949), NADH-ubiquinone oxidoreductase, 51 kDa subunit (InterPro:IPR011538), NADH-ubiquinone oxidoreductase, F subunit (InterPro:IPR011537); Has 6830 Blast hits to 6821 proteins in 987 species: Archae - 16; Bacteria - 2579; Metazoa - 179; Fungi - 80; Plants - 67; Viruses - 0; Other Eukaryotes - 3909 (source: NCBI BLink).  protein_id AT5G08530.1p  transcript_id AT5G08530.1  protein_id AT5G08530.1p  transcript_id AT5G08530.1  
At5g08535	chr5:002762455	0.0	W/2762455-2762517,2762710-2762940,2763189-2763320	AT5G08535.1  CDS  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component intracellular|GO:0005622||ISS  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product D111/G-patch domain-containing protein  note D111/G-patch domain-containing protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: D111/G-patch (InterPro:IPR000467); BEST Arabidopsis thaliana protein match is: D111/G-patch domain-containing protein (TAIR:AT3G52350.1); Has 689 Blast hits to 689 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 494; Fungi - 66; Plants - 91; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT5G08535.1p  transcript_id AT5G08535.1  protein_id AT5G08535.1p  transcript_id AT5G08535.1  
At5g08535	chr5:002762722	0.0	W/2762722-2762940,2763189-2763320	AT5G08535.2  CDS  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component intracellular|GO:0005622||ISS  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product D111/G-patch domain-containing protein  note D111/G-patch domain-containing protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: D111/G-patch (InterPro:IPR000467); BEST Arabidopsis thaliana protein match is: D111/G-patch domain-containing protein (TAIR:AT3G52350.1); Has 675 Blast hits to 675 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 488; Fungi - 61; Plants - 90; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT5G08535.2p  transcript_id AT5G08535.2  protein_id AT5G08535.2p  transcript_id AT5G08535.2  
At5g08540	chr5:002763914	0.0	W/2763914-2764366,2764450-2764545,2764652-2764829,2764906-2765003,2765147-2765208,2765278-2765431	AT5G08540.1  CDS  gene_syn MAH20.10, MAH20_10  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 18 Blast hits to 18 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G08540.1p  transcript_id AT5G08540.1  protein_id AT5G08540.1p  transcript_id AT5G08540.1  
At5g08550	chr5:002769170	0.0	C/2769170-2770282,2768749-2768916,2767458-2768137,2767005-2767287,2766615-2766904,2765981-2766173	AT5G08550.1  CDS  gene_syn ILP1, MAH20.11, MAH20_11, increased level of polyploidy1-1D  gene ILP1  function Encodes a transcriptional repressor that is homologous to the C-terminal region of mammalian GC binding factor. It regulates endoreduplication through control of CYC2A expression.  go_component nucleus|GO:0005634|17012601|IDA  go_process negative regulation of transcription|GO:0016481|17012601|IDA  go_process DNA endoreduplication|GO:0042023|17012601|IMP  go_function translation repressor activity|GO:0030371|17012601|IDA  product ILP1 (increased level of polyploidy1-1D); translation repressor  note increased level of polyploidy1-1D (ILP1); FUNCTIONS IN: translation repressor activity; INVOLVED IN: DNA endoreduplication, negative regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GC-rich sequence DNA-binding factor-like (InterPro:IPR012890); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT5G09210.1); Has 643 Blast hits to 604 proteins in 134 species: Archae - 0; Bacteria - 25; Metazoa - 416; Fungi - 61; Plants - 31; Viruses - 1; Other Eukaryotes - 109 (source: NCBI BLink).  protein_id AT5G08550.1p  transcript_id AT5G08550.1  protein_id AT5G08550.1p  transcript_id AT5G08550.1  
At5g08560	chr5:002773024	0.0	C/2773024-2773827,2772501-2772602,2771746-2772375,2771104-2771337	AT5G08560.1  CDS  gene_syn MAH20.12, MAH20_12  go_component cellular_component|GO:0005575||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G43920.1); Has 43626 Blast hits to 21368 proteins in 612 species: Archae - 68; Bacteria - 5676; Metazoa - 19918; Fungi - 8215; Plants - 3870; Viruses - 6; Other Eukaryotes - 5873 (source: NCBI BLink).  protein_id AT5G08560.1p  transcript_id AT5G08560.1  protein_id AT5G08560.1p  transcript_id AT5G08560.1  
At5g08560	chr5:002773024	0.0	C/2773024-2773827,2772501-2772602,2771746-2772375,2771104-2771337	AT5G08560.2  CDS  gene_syn MAH20.12, MAH20_12  go_component cellular_component|GO:0005575||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G43920.1); Has 43626 Blast hits to 21368 proteins in 612 species: Archae - 68; Bacteria - 5676; Metazoa - 19918; Fungi - 8215; Plants - 3870; Viruses - 6; Other Eukaryotes - 5873 (source: NCBI BLink).  protein_id AT5G08560.2p  transcript_id AT5G08560.2  protein_id AT5G08560.2p  transcript_id AT5G08560.2  
At5g08565	chr5:002775964	0.0	W/2775964-2776053,2776134-2776225,2776578-2776633,2776924-2776985,2777104-2777154	AT5G08565.1  CDS  go_component nucleus|GO:0005634||IEA  go_process positive regulation of transcription|GO:0045941||IEA  go_function positive transcription elongation factor activity|GO:0008159||IEA  go_function zinc ion binding|GO:0008270||IEA  product positive transcription elongation factor/ zinc ion binding  note positive transcription elongation factor/ zinc ion binding; FUNCTIONS IN: positive transcription elongation factor activity, zinc ion binding; INVOLVED IN: positive regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation Spt4 (InterPro:IPR009287), Transcription initiation Spt4-like (InterPro:IPR016046); BEST Arabidopsis thaliana protein match is: SPT42 (SPT4 HOMOLOG 2); positive transcription elongation factor/ zinc ion binding (TAIR:AT5G63670.1); Has 325 Blast hits to 325 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 133; Fungi - 119; Plants - 27; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT5G08565.1p  transcript_id AT5G08565.1  protein_id AT5G08565.1p  transcript_id AT5G08565.1  
At5g08570	chr5:002778433	0.0	W/2778433-2778690,2778937-2779398,2779488-2780300	AT5G08570.1  CDS  gene_syn MAH20.13, MAH20_13  go_process glycolysis|GO:0006096||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function catalytic activity|GO:0003824||IEA  go_function pyruvate kinase activity|GO:0004743||IEA  go_function potassium ion binding|GO:0030955||IEA  go_component cellular_component|GO:0005575||ND  go_process glycolysis|GO:0006096||ISS  go_function pyruvate kinase activity|GO:0004743||ISS  product pyruvate kinase, putative  note pyruvate kinase, putative; FUNCTIONS IN: pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity; INVOLVED IN: glycolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate kinase, C-terminal-like (InterPro:IPR015795), Pyruvate kinase, active site (InterPro:IPR018209), Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), Pyruvate kinase, alpha/beta (InterPro:IPR015794), Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate kinase (InterPro:IPR001697), Pyruvate kinase, barrel (InterPro:IPR015793); BEST Arabidopsis thaliana protein match is: pyruvate kinase, putative (TAIR:AT5G63680.1); Has 6890 Blast hits to 6815 proteins in 1520 species: Archae - 99; Bacteria - 3254; Metazoa - 489; Fungi - 169; Plants - 283; Viruses - 0; Other Eukaryotes - 2596 (source: NCBI BLink).  protein_id AT5G08570.1p  transcript_id AT5G08570.1  protein_id AT5G08570.1p  transcript_id AT5G08570.1  
At5g08580	chr5:002782558	0.0	C/2782558-2782961,2782181-2782383,2781821-2781923,2781639-2781704,2781376-2781549,2781196-2781292,2780976-2781104	AT5G08580.1  CDS  gene_syn MAH20.14, MAH20_14  go_component plasma membrane|GO:0005886|17317660|IDA  go_function calcium ion binding|GO:0005509||IEA  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT4G27790.1); Has 1683 Blast hits to 1652 proteins in 245 species: Archae - 0; Bacteria - 5; Metazoa - 858; Fungi - 86; Plants - 540; Viruses - 0; Other Eukaryotes - 194 (source: NCBI BLink).  protein_id AT5G08580.1p  transcript_id AT5G08580.1  protein_id AT5G08580.1p  transcript_id AT5G08580.1  
At5g08590	chr5:002783537	0.0	W/2783537-2783656,2783889-2783963,2784040-2784141,2784256-2784309,2784487-2784579,2784741-2784833,2785164-2785268,2785358-2785456,2785549-2785869	AT5G08590.1  CDS  gene_syn ARABIDOPSIS SERINE/THREONINE KINASE 2, ARABIDOPSIS SKP1-LIKE1, ASK2, MAH20.15, MAH20_15, SNF1-RELATED PROTEIN KINASE 2.1, SNRK2-1, SNRK2.1, SRK2G  gene SNRK2.1  function Encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Similar to the calcium/calmodulin-dependent protein kinase subfamily and the SNF1 kinase subfamily.  go_component nucleus|GO:0005634|18433157|IDA  go_process protein amino acid phosphorylation|GO:0006468|8393717|TAS  go_process response to osmotic stress|GO:0006970|15292193|IDA  go_process response to salt stress|GO:0009651|15292193|IDA  go_function protein kinase activity|GO:0004672|8393717|TAS  go_function kinase activity|GO:0016301|15292193|IDA  go_function kinase activity|GO:0016301||ISS  product SNRK2.1 (SNF1-RELATED PROTEIN KINASE 2.1); kinase/ protein kinase  note SNF1-RELATED PROTEIN KINASE 2.1 (SNRK2.1); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: response to salt stress, protein amino acid phosphorylation, response to osmotic stress; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Plant protein serine/threonine kinase-like (InterPro:IPR015740), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5); kinase (TAIR:AT5G63650.1); Has 82013 Blast hits to 80720 proteins in 2074 species: Archae - 51; Bacteria - 7191; Metazoa - 35772; Fungi - 7968; Plants - 14489; Viruses - 446; Other Eukaryotes - 16096 (source: NCBI BLink).  protein_id AT5G08590.1p  transcript_id AT5G08590.1  protein_id AT5G08590.1p  transcript_id AT5G08590.1  
At5g08600	chr5:002786298	0.0	W/2786298-2786567,2786699-2786810,2786911-2787392,2787484-2787702,2787801-2788100,2788190-2788471,2788559-2788639,2788714-2788791,2788923-2789318,2789397-2789528,2789620-2789736	AT5G08600.1  CDS  gene_syn MAH20.16, MAH20_16  go_component small-subunit processome|GO:0032040||IEA  go_process rRNA processing|GO:0006364||IEA  go_process rRNA processing|GO:0006364||ISS  go_function molecular_function|GO:0003674||ND  product U3 ribonucleoprotein (Utp) family protein  note U3 ribonucleoprotein (Utp) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: small-subunit processome; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp14 (InterPro:IPR006709); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02400.1); Has 6994 Blast hits to 5099 proteins in 386 species: Archae - 8; Bacteria - 727; Metazoa - 2400; Fungi - 984; Plants - 213; Viruses - 74; Other Eukaryotes - 2588 (source: NCBI BLink).  protein_id AT5G08600.1p  transcript_id AT5G08600.1  protein_id AT5G08600.1p  transcript_id AT5G08600.1  
At5g08610	chr5:002790341	0.0	W/2790341-2791488,2791573-2791679,2791950-2792005,2792118-2792342,2792500-2792706,2792781-2792867,2792956-2793051,2793131-2793346,2793431-2793613,2793832-2794059	AT5G08610.1  CDS  gene_syn MAH20.17, MAH20_17  go_component chloroplast|GO:0009507|18431481|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD box RNA helicase (RH26)  note DEAD box RNA helicase (RH26); FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: STRS2 (STRESS RESPONSE SUPPRESSOR 2); ATP-dependent helicase/ RNA binding (TAIR:AT5G08620.1); Has 35039 Blast hits to 30023 proteins in 1801 species: Archae - 517; Bacteria - 15178; Metazoa - 6609; Fungi - 3858; Plants - 1539; Viruses - 50; Other Eukaryotes - 7288 (source: NCBI BLink).  protein_id AT5G08610.1p  transcript_id AT5G08610.1  protein_id AT5G08610.1p  transcript_id AT5G08610.1  
At5g08620	chr5:002794540	0.0	W/2794540-2794781,2794876-2794982,2795106-2795161,2795259-2795483,2795880-2796086,2796161-2796247,2796337-2796432,2796507-2796722,2796825-2797007,2797276-2797548	AT5G08620.1  CDS  gene_syn ATRH25, MAH20.18, MAH20_18, RNA HELICASE 25, STRESS RESPONSE SUPPRESSOR 2, STRS2  gene STRS2  function Similar in sequence to DEAD-box RNA helicases. Binds RNA. Involved in drought, salt and cold stress responses.  go_component cellular_component|GO:0005575||ND  go_process response to cold|GO:0009409|18725370|IEP  go_process response to water deprivation|GO:0009414|18725370|IMP  go_process response to salt stress|GO:0009651|18725370|IMP  go_function RNA binding|GO:0003723|18725370|IDA  go_function ATP-dependent helicase activity|GO:0008026||ISS  product STRS2 (STRESS RESPONSE SUPPRESSOR 2); ATP-dependent helicase/ RNA binding  note STRESS RESPONSE SUPPRESSOR 2 (STRS2); FUNCTIONS IN: RNA binding, ATP-dependent helicase activity; INVOLVED IN: response to water deprivation, response to salt stress, response to cold; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase (RH26) (TAIR:AT5G08610.1); Has 27108 Blast hits to 26527 proteins in 1696 species: Archae - 455; Bacteria - 10931; Metazoa - 4989; Fungi - 3244; Plants - 1370; Viruses - 14; Other Eukaryotes - 6105 (source: NCBI BLink).  protein_id AT5G08620.1p  transcript_id AT5G08620.1  protein_id AT5G08620.1p  transcript_id AT5G08620.1  
At5g08630	chr5:002802026	0.0	C/2802026-2802138,2801624-2801796,2800979-2801388,2800806-2800884,2800239-2800576,2799620-2800080,2799338-2799533,2799076-2799237,2798898-2798986,2798575-2798725	AT5G08630.1  CDS  gene_syn MAH20.19, MAH20_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DDT domain-containing protein  note DDT domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DDT superfamily (InterPro:IPR018501), DDT family (InterPro:IPR004022), DDT subgroup (InterPro:IPR018500), WSTF/Acf1/Cbp146 (InterPro:IPR013136); BEST Arabidopsis thaliana protein match is: peptidase M50 family protein / sterol-regulatory element binding protein (SREBP) site 2 protease family protein (TAIR:AT5G35210.2); Has 7557 Blast hits to 4425 proteins in 321 species: Archae - 4; Bacteria - 255; Metazoa - 3089; Fungi - 648; Plants - 251; Viruses - 94; Other Eukaryotes - 3216 (source: NCBI BLink).  protein_id AT5G08630.1p  transcript_id AT5G08630.1  protein_id AT5G08630.1p  transcript_id AT5G08630.1  
At5g08640	chr5:002804009	0.0	W/2804009-2804475,2804547-2804874,2804960-2805175	AT5G08640.1  CDS  gene_syn FLAVONOL SYNTHASE, FLS, T2K12.5  gene FLS  function Encodes a flavonol synthase that catalyzes formation of flavonols from dihydroflavonols.  go_component cellular_component|GO:0005575||ND  go_process flavonoid biosynthetic process|GO:0009813|12126705|IDA  go_function flavonol synthase activity|GO:0045431|12126705|IDA  product FLS (FLAVONOL SYNTHASE); flavonol synthase  note FLAVONOL SYNTHASE (FLS); FUNCTIONS IN: flavonol synthase activity; INVOLVED IN: flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: FLS3 (FLAVONOL SYNTHASE 3); flavonol synthase (TAIR:AT5G63590.1); Has 5844 Blast hits to 5821 proteins in 675 species: Archae - 0; Bacteria - 700; Metazoa - 100; Fungi - 598; Plants - 3089; Viruses - 0; Other Eukaryotes - 1357 (source: NCBI BLink).  protein_id AT5G08640.1p  transcript_id AT5G08640.1  protein_id AT5G08640.1p  transcript_id AT5G08640.1  
At5g08650	chr5:002812981	0.0	C/2812981-2813220,2812708-2812884,2812523-2812609,2812267-2812323,2812041-2812106,2811542-2811604,2811143-2811187,2810939-2811039,2810580-2810676,2810266-2810337,2809640-2809794,2809499-2809556,2809134-2809214,2808818-2808904,2808627-2808698,2808402-2808536,2808218-2808291,2807745-2807832,2807349-2807426,2806995-2807070,2806720-2806760,2806533-2806628	AT5G08650.1  CDS  gene_syn T2K12.1  go_component chloroplast|GO:0009507|18431481|IDA  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_function translation elongation factor activity|GO:0003746||ISS  go_function GTP binding|GO:0005525||ISS  product GTP-binding protein LepA, putative  note GTP-binding protein LepA, putative; FUNCTIONS IN: GTP binding, translation elongation factor activity, GTPase activity; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding protein LepA (InterPro:IPR006297), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), GTP-binding protein LepA, C-terminal (InterPro:IPR013842), Elongation factor G, III and V (InterPro:IPR009022), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: GTP binding / GTPase/ translation elongation factor (TAIR:AT5G39900.1); Has 58694 Blast hits to 51359 proteins in 6862 species: Archae - 845; Bacteria - 29013; Metazoa - 5946; Fungi - 3236; Plants - 868; Viruses - 0; Other Eukaryotes - 18786 (source: NCBI BLink).  protein_id AT5G08650.1p  transcript_id AT5G08650.1  protein_id AT5G08650.1p  transcript_id AT5G08650.1  
At5g08660	chr5:002814526	0.0	W/2814526-2814834,2814978-2815291,2815378-2815470,2815565-2815655,2815850-2815943,2816023-2816120,2816312-2816381,2816573-2816676,2816776-2816892,2817003-2817079,2817181-2817225,2817308-2817845	AT5G08660.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component mitochondrion|GO:0005739|14671022|IDA  product unknown protein  note unknown protein; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF668 (InterPro:IPR007700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34320.1); Has 161 Blast hits to 126 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 153; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G08660.1p  transcript_id AT5G08660.1  protein_id AT5G08660.1p  transcript_id AT5G08660.1  
At5g08670	chr5:002820676	0.0	C/2820676-2821149,2820283-2820358,2820114-2820202,2819905-2820022,2819722-2819825,2819463-2819621,2819155-2819379,2818749-2819060,2818395-2818508	AT5G08670.1  CDS  function Encodes the mitochondrial ATP synthase beta-subunit. This subunit is encoded by a multigene family of three members (At5g08670, At5g08680, At5g08690) that shared 98% sequence identity at the amino acid level.  go_component mitochondrion|GO:0005739|15276431|IDA  go_component mitochondrion|GO:0005739|17137349|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)|GO:0000275|12681508|IDA  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|12681508|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process response to oxidative stress|GO:0006979|12492832|IDA  go_function hydrogen ion transporting ATP synthase activity, rotational mechanism|GO:0046933||ISS  product ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism  note ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, ATP binding; INVOLVED IN: response to oxidative stress; LOCATED IN: mitochondrion, plasma membrane, chloroplast, mitochondrial proton-transporting ATP synthase complex, catalytic core F(1); EXPRESSED IN: 8 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal (InterPro:IPR000793), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR004100), ATPase, F1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR018118), ATPase, F1 complex, beta subunit (InterPro:IPR005722), ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding (InterPro:IPR000194); BEST Arabidopsis thaliana protein match is: ATP synthase beta chain 2, mitochondrial (TAIR:AT5G08690.1); Has 2499 Blast hits to 2496 proteins in 917 species: Archae - 12; Bacteria - 1880; Metazoa - 176; Fungi - 40; Plants - 247; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).  protein_id AT5G08670.1p  transcript_id AT5G08670.1  protein_id AT5G08670.1p  transcript_id AT5G08670.1  
At5g08680	chr5:002821992	0.0	W/2821992-2822474,2822686-2822761,2822860-2822948,2823029-2823146,2823232-2823335,2823437-2823595,2823669-2823893,2823997-2824308,2824570-2824683	AT5G08680.1  CDS  function Encodes the mitochondrial ATP synthase beta-subunit. This subunit is encoded by a multigene family of three members (At5g08670, At5g08680, At5g08690) that shared 98% sequence identity at the amino acid level.  go_component mitochondrion|GO:0005739|18385124|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function copper ion binding|GO:0005507|16526091|IDA  go_component mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)|GO:0000275|12681508|IDA  go_component mitochondrion|GO:0005739|12681508|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function hydrogen ion transporting ATP synthase activity, rotational mechanism|GO:0046933||ISS  product ATP synthase beta chain, mitochondrial, putative  note ATP synthase beta chain, mitochondrial, putative; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, copper ion binding; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, membrane, mitochondrial proton-transporting ATP synthase complex, catalytic core F(1); EXPRESSED IN: 9 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal (InterPro:IPR000793), ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR004100), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, F1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR018118), ATPase, F1 complex, beta subunit (InterPro:IPR005722), ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding (InterPro:IPR000194); BEST Arabidopsis thaliana protein match is: ATP synthase beta chain 2, mitochondrial (TAIR:AT5G08690.1); Has 32574 Blast hits to 32546 proteins in 7349 species: Archae - 400; Bacteria - 14585; Metazoa - 1152; Fungi - 469; Plants - 6772; Viruses - 0; Other Eukaryotes - 9196 (source: NCBI BLink).  protein_id AT5G08680.1p  transcript_id AT5G08680.1  protein_id AT5G08680.1p  transcript_id AT5G08680.1  
At5g08690	chr5:002825739	0.0	W/2825739-2826212,2826515-2826590,2826677-2826765,2826854-2826971,2827051-2827154,2827256-2827414,2827521-2827745,2827842-2828153,2828239-2828352	AT5G08690.1  CDS  function Encodes the mitochondrial ATP synthase beta-subunit. This subunit is encoded by a multigene family of three members (At5g08670, At5g08680, At5g08690) that shared 98% sequence identity at the amino acid level.  go_component nucleolus|GO:0005730|15496452|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_process proton transport|GO:0015992||IEA  go_process ATP metabolic process|GO:0046034||IEA  go_function copper ion binding|GO:0005507|16526091|IDA  go_component mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)|GO:0000275|12681508|IDA  go_component mitochondrion|GO:0005739|12681508|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function poly(U) binding|GO:0008266|17511964|IDA  go_function hydrogen ion transporting ATP synthase activity, rotational mechanism|GO:0046933||ISS  product ATP synthase beta chain 2, mitochondrial  note ATP synthase beta chain 2, mitochondrial; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, copper ion binding, poly(U) binding; INVOLVED IN: proton transport, ATP metabolic process, ATP synthesis coupled proton transport; LOCATED IN: mitochondrion, nucleolus, chloroplast envelope, mitochondrial proton-transporting ATP synthase complex, catalytic core F(1); EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal (InterPro:IPR000793), ATPase, F1 complex, beta subunit (InterPro:IPR005722), ATPase, F1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR018118), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR004100), ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding (InterPro:IPR000194); BEST Arabidopsis thaliana protein match is: ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism (TAIR:AT5G08670.1); Has 32574 Blast hits to 32546 proteins in 7349 species: Archae - 400; Bacteria - 14585; Metazoa - 1152; Fungi - 469; Plants - 6772; Viruses - 0; Other Eukaryotes - 9196 (source: NCBI BLink).  protein_id AT5G08690.1p  transcript_id AT5G08690.1  protein_id AT5G08690.1p  transcript_id AT5G08690.1  
At5g08695	chr5:002829341	0.0	W/2829341-2829348,2830103-2830210,2831133-2831247,2831319-2831803,2831884-2832015,2832139-2832228,2832323-2832440,2832522-2832845,2832923-2832987,2833120-2833273,2833534-2833638,2833731-2833829,2833920-2834189	AT5G08695.1  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding / nucleotide binding  note nucleic acid binding / nucleotide binding; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT4G19610.1); Has 17674 Blast hits to 12529 proteins in 591 species: Archae - 10; Bacteria - 1022; Metazoa - 9635; Fungi - 2298; Plants - 2890; Viruses - 0; Other Eukaryotes - 1819 (source: NCBI BLink).  protein_id AT5G08695.1p  transcript_id AT5G08695.1  protein_id AT5G08695.1p  transcript_id AT5G08695.1  
At5g08710	chr5:002837572	0.0	C/2837572-2837866,2837101-2837177,2836909-2836987,2836737-2836796,2836523-2836624,2836334-2836427,2836146-2836188,2835984-2836029,2835862-2835908,2835691-2835793,2835432-2835486,2835234-2835337,2835069-2835148,2834858-2834977	AT5G08710.1  CDS  go_process biological_process|GO:0008150||ND  go_function chromatin binding|GO:0003682||ISS  go_function Ran GTPase binding|GO:0008536||ISS  product regulator of chromosome condensation (RCC1) family protein / UVB-resistance protein-related  note regulator of chromosome condensation (RCC1) family protein / UVB-resistance protein-related; FUNCTIONS IN: chromatin binding, Ran GTPase binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: UVR8 (UVB-RESISTANCE 8); chromatin binding / guanyl-nucleotide exchange factor (TAIR:AT5G63860.1); Has 16830 Blast hits to 4687 proteins in 305 species: Archae - 67; Bacteria - 1712; Metazoa - 6546; Fungi - 1000; Plants - 1320; Viruses - 0; Other Eukaryotes - 6185 (source: NCBI BLink).  protein_id AT5G08710.1p  transcript_id AT5G08710.1  protein_id AT5G08710.1p  transcript_id AT5G08710.1  
At5g08712	chr5:002838650	0.0	W/2838650-2838757	AT5G08712.1  miRNA  gene_syn MICRORNA 166, MICRORNA 166C, MIR166, MIR166C  gene MIR166C  function Encodes a microRNA that targets several HD-ZIPIII family members including PHV, PHB, REV, ATHB-8, and ATHB-15. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCGGACCAGGCUUCAUUCCCC  go_process gene silencing by miRNA|GO:0035195|15851028|IDA  product MIR166C (MICRORNA 166C); miRNA  transcript_id AT5G08712.1  
At5g08717	chr5:002840628	0.0	W/2840628-2840728	AT5G08717.1  miRNA  gene_syn MICRORNA 166, MICRORNA 166D, MIR166, MIR166D  gene MIR166D  function Encodes a microRNA that targets several HD-ZIPIII family members including PHV, PHB, REV, ATHB-8, and ATHB-15. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCGGACCAGGCUUCAUUCCCC  go_process gene silencing by miRNA|GO:0035195|15851028|IDA  product MIR166D (MICRORNA 166D); miRNA  transcript_id AT5G08717.1  
At5g08720	chr5:002844941	0.0	C/2844941-2845335,2844590-2844710,2844042-2844127,2843483-2843864,2843283-2843383,2843067-2843133,2842564-2842791,2842035-2842481,2841878-2841950,2841536-2841795	AT5G08720.1  CDS  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01650.2); Has 578 Blast hits to 324 proteins in 67 species: Archae - 1; Bacteria - 248; Metazoa - 1; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 269 (source: NCBI BLink).  protein_id AT5G08720.1p  transcript_id AT5G08720.1  protein_id AT5G08720.1p  transcript_id AT5G08720.1  
At5g08730	chr5:002846625	0.0	C/2846625-2847415,2845824-2846535	AT5G08730.1  CDS  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product IBR domain-containing protein  note IBR domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: IBR domain-containing protein (TAIR:AT5G63730.1); Has 1352 Blast hits to 1347 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 745; Fungi - 122; Plants - 228; Viruses - 0; Other Eukaryotes - 257 (source: NCBI BLink).  protein_id AT5G08730.1p  transcript_id AT5G08730.1  protein_id AT5G08730.1p  transcript_id AT5G08730.1  
At5g08740	chr5:002851281	0.0	C/2851281-2851323,2850868-2851061,2850683-2850778,2850533-2850599,2850268-2850451,2850031-2850124,2849655-2849867,2849227-2849574,2849070-2849146,2848752-2848995	AT5G08740.1  CDS  gene_syn NAD(P)H dehydrogenase C1, NDC1  gene NDC1  go_component cell wall|GO:0005618|15593128|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_component plastoglobule|GO:0010287|16461379|IDA  go_component intrinsic to mitochondrial inner membrane|GO:0031304|16258072|IDA  go_function NADH dehydrogenase activity|GO:0003954||ISS  product NDC1 (NAD(P)H dehydrogenase C1); NADH dehydrogenase  note NAD(P)H dehydrogenase C1 (NDC1); FUNCTIONS IN: NADH dehydrogenase activity; LOCATED IN: intrinsic to mitochondrial inner membrane, cell wall, chloroplast, plastoglobule; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027); BEST Arabidopsis thaliana protein match is: NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2); FAD binding / NADH dehydrogenase/ oxidoreductase (TAIR:AT2G29990.1); Has 6169 Blast hits to 6166 proteins in 1233 species: Archae - 193; Bacteria - 4156; Metazoa - 270; Fungi - 344; Plants - 171; Viruses - 0; Other Eukaryotes - 1035 (source: NCBI BLink).  protein_id AT5G08740.1p  transcript_id AT5G08740.1  protein_id AT5G08740.1p  transcript_id AT5G08740.1  
At5g08750	chr5:002852912	0.0	W/2852912-2852942,2853076-2853962,2854058-2854132,2854224-2854343	AT5G08750.3  CDS  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: SHA1 (shoot apical meristem arrest 1); protein binding / zinc ion binding (TAIR:AT5G63780.1); Has 166 Blast hits to 166 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G08750.3p  transcript_id AT5G08750.3  protein_id AT5G08750.3p  transcript_id AT5G08750.3  
At5g08750	chr5:002853066	0.0	W/2853066-2853962,2854058-2854132,2854224-2854343	AT5G08750.1  CDS  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: SHA1 (shoot apical meristem arrest 1); protein binding / zinc ion binding (TAIR:AT5G63780.1); Has 166 Blast hits to 166 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G08750.1p  transcript_id AT5G08750.1  protein_id AT5G08750.1p  transcript_id AT5G08750.1  
At5g08750	chr5:002853066	0.0	W/2853066-2853962,2854058-2854132,2854224-2854343	AT5G08750.2  CDS  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: SHA1 (shoot apical meristem arrest 1); protein binding / zinc ion binding (TAIR:AT5G63780.1); Has 166 Blast hits to 166 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G08750.2p  transcript_id AT5G08750.2  protein_id AT5G08750.2p  transcript_id AT5G08750.2  
At5g08760	chr5:002854947	0.0	W/2854947-2855043,2855220-2855282,2855397-2855479	AT5G08760.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G08760.1p  transcript_id AT5G08760.1  protein_id AT5G08760.1p  transcript_id AT5G08760.1  
At5g08770	chr5:002855638	0.0	C/2855638-2856531	AT5G08770.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 654 Blast hits to 169 proteins in 45 species: Archae - 0; Bacteria - 57; Metazoa - 295; Fungi - 70; Plants - 1; Viruses - 0; Other Eukaryotes - 231 (source: NCBI BLink).  protein_id AT5G08770.1p  transcript_id AT5G08770.1  protein_id AT5G08770.1p  transcript_id AT5G08770.1  
At5g08780	chr5:002856782	0.0	W/2856782-2856811,2857183-2857332,2857421-2858202,2858295-2858382,2858487-2858810	AT5G08780.1  CDS  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_component nucleosome|GO:0000786||ISS  go_process nucleosome assembly|GO:0006334||ISS  go_function DNA binding|GO:0003677||ISS  product histone H1/H5 family protein  note histone H1/H5 family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: HON4; DNA binding (TAIR:AT3G18035.1); Has 220 Blast hits to 212 proteins in 61 species: Archae - 3; Bacteria - 16; Metazoa - 30; Fungi - 7; Plants - 125; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT5G08780.1p  transcript_id AT5G08780.1  protein_id AT5G08780.1p  transcript_id AT5G08780.1  
At5g08790	chr5:002859985	0.0	C/2859985-2860144,2859615-2859895,2859113-2859523	AT5G08790.1  CDS  gene_syn ATAF2, Arabidopsis NAC domain containing protein 81, anac081  gene ATAF2  function induced by wounding, belongs to a large family of putative transcriptional activators with NAC domain.  go_component nucleus|GO:0005634|12646039|IDA  go_process multicellular organismal development|GO:0007275||ISS  go_process regulation of cell size|GO:0008361|16115070|IMP  go_process response to light stimulus|GO:0009416|16115070|IEP  go_process response to wounding|GO:0009611|11516145|IEP  go_process response to wounding|GO:0009611|16115070|IEP  go_process response to fungus|GO:0009620|16115070|IMP  go_process response to sucrose stimulus|GO:0009744|16115070|IEP  go_process response to salicylic acid stimulus|GO:0009751|16115070|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16115070|IEP  go_function transcription activator activity|GO:0016563|11516145|ISS  product ATAF2; transcription activator  note ATAF2; FUNCTIONS IN: transcription activator activity; INVOLVED IN: in 8 processes; LOCATED IN: nucleus; EXPRESSED IN: primary root, lateral root, root cap of the lateral root, cotyledon, adult leaf; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC102 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 102); transcription factor (TAIR:AT5G63790.1); Has 1623 Blast hits to 1620 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1623; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G08790.1p  transcript_id AT5G08790.1  protein_id AT5G08790.1p  transcript_id AT5G08790.1  
At5g09210	chr5:002864850	0.0	C/2864850-2865359,2864657-2864782,2864490-2864612,2864125-2864441,2863627-2863900,2863226-2863521,2862740-2862848,2862610-2862666	AT5G09210.1  CDS  gene_syn T2K12.2  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||IEA  go_function transcription factor activity|GO:0003700||IEA  product DNA binding / transcription factor  note DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: GC-rich sequence DNA-binding factor-like (InterPro:IPR012890); BEST Arabidopsis thaliana protein match is: ILP1 (increased level of polyploidy1-1D); translation repressor (TAIR:AT5G08550.1); Has 154 Blast hits to 154 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 120; Fungi - 4; Plants - 20; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G09210.1p  transcript_id AT5G09210.1  protein_id AT5G09210.1p  transcript_id AT5G09210.1  
At5g09220	chr5:002866867	0.0	W/2866867-2867008,2867115-2867348,2867430-2867523,2867618-2867832,2867913-2868052,2868207-2868863	AT5G09220.1  CDS  gene_syn AAP2, AMINO ACID PERMEASE 2, T2K12.6  gene AAP2  function member of AAAP family  go_component integral to plasma membrane|GO:0005887|8281191|TAS  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_process acidic amino acid transport|GO:0015800|7608199|IDA  go_process neutral amino acid transport|GO:0015804|7608199|IDA  go_function amino acid transmembrane transporter activity|GO:0015171|8281191|IGI  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product AAP2 (AMINO ACID PERMEASE 2); amino acid transmembrane transporter  note AMINO ACID PERMEASE 2 (AAP2); FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: neutral amino acid transport, amino acid transport, acidic amino acid transport; LOCATED IN: integral to plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: AAP4; acidic amino acid transmembrane transporter/ amino acid transmembrane transporter/ neutral amino acid transmembrane transporter/ primary active transmembrane transporter (TAIR:AT5G63850.1); Has 1768 Blast hits to 1760 proteins in 161 species: Archae - 0; Bacteria - 2; Metazoa - 507; Fungi - 264; Plants - 735; Viruses - 0; Other Eukaryotes - 260 (source: NCBI BLink).  protein_id AT5G09220.1p  transcript_id AT5G09220.1  protein_id AT5G09220.1p  transcript_id AT5G09220.1  
At5g09225	chr5:002870257	0.0	C/2870257-2870379,2869556-2869639	AT5G09225.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 14 Blast hits to 14 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G09225.1p  transcript_id AT5G09225.1  protein_id AT5G09225.1p  transcript_id AT5G09225.1  
At5g09230	chr5:002871559	0.0	W/2871559-2871560,2871648-2871691,2871819-2872056,2872139-2872204,2872305-2872350,2872460-2872620,2872697-2872826,2872906-2873070,2873144-2873271,2873344-2873443,2873563-2873613	AT5G09230.7  CDS  gene_syn SIRTUIN 2, SRT2, T2K12.8  gene SRT2  function Encodes SRT2, a member of the SIR2 (sirtuin) family HDAC (histone deacetylase) (SRT1/AT5g55760, SRT2/AT5G09230).  go_process chromatin silencing|GO:0006342||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process protein amino acid deacetylation|GO:0006476||IEA  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function NAD-dependent histone deacetylase activity|GO:0017136||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_component chromatin silencing complex|GO:0005677||ISS  go_process chromatin silencing|GO:0006342||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product SRT2 (SIRTUIN 2); DNA binding / NAD or NADH binding / NAD-dependent histone deacetylase/ zinc ion binding  note SIRTUIN 2 (SRT2); FUNCTIONS IN: NAD or NADH binding, DNA binding, zinc ion binding, NAD-dependent histone deacetylase activity; INVOLVED IN: protein amino acid deacetylation, chromatin silencing, regulation of transcription, DNA-dependent; LOCATED IN: chromatin silencing complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent histone deacetylase, silent information regulator Sir2 (InterPro:IPR003000); BEST Arabidopsis thaliana protein match is: SRT1 (sirtuin 1); DNA binding / NAD or NADH binding / NAD-dependent histone deacetylase/ zinc ion binding (TAIR:AT5G55760.1); Has 4042 Blast hits to 4033 proteins in 1066 species: Archae - 102; Bacteria - 1907; Metazoa - 679; Fungi - 475; Plants - 49; Viruses - 0; Other Eukaryotes - 830 (source: NCBI BLink).  protein_id AT5G09230.7p  transcript_id AT5G09230.7  protein_id AT5G09230.7p  transcript_id AT5G09230.7  
At5g09230	chr5:002871655	0.0	W/2871655-2871691,2871819-2872056,2872139-2872204,2872305-2872350,2872460-2872620,2872697-2872826,2872906-2873070,2873144-2873271,2873344-2873443,2873563-2873613	AT5G09230.1  CDS  gene_syn SIRTUIN 2, SRT2, T2K12.8  gene SRT2  function Encodes SRT2, a member of the SIR2 (sirtuin) family HDAC (histone deacetylase) (SRT1/AT5g55760, SRT2/AT5G09230).  go_process chromatin silencing|GO:0006342||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process protein amino acid deacetylation|GO:0006476||IEA  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function NAD-dependent histone deacetylase activity|GO:0017136||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_component chromatin silencing complex|GO:0005677||ISS  go_process chromatin silencing|GO:0006342||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product SRT2 (SIRTUIN 2); DNA binding / NAD or NADH binding / NAD-dependent histone deacetylase/ zinc ion binding  note SIRTUIN 2 (SRT2); FUNCTIONS IN: NAD or NADH binding, DNA binding, zinc ion binding, NAD-dependent histone deacetylase activity; INVOLVED IN: protein amino acid deacetylation, chromatin silencing, regulation of transcription, DNA-dependent; LOCATED IN: chromatin silencing complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent histone deacetylase, silent information regulator Sir2 (InterPro:IPR003000); BEST Arabidopsis thaliana protein match is: SRT1 (sirtuin 1); DNA binding / NAD or NADH binding / NAD-dependent histone deacetylase/ zinc ion binding (TAIR:AT5G55760.1); Has 4043 Blast hits to 4034 proteins in 1066 species: Archae - 102; Bacteria - 1907; Metazoa - 679; Fungi - 475; Plants - 49; Viruses - 0; Other Eukaryotes - 831 (source: NCBI BLink).  protein_id AT5G09230.1p  transcript_id AT5G09230.1  protein_id AT5G09230.1p  transcript_id AT5G09230.1  
At5g09230	chr5:002871655	0.0	W/2871655-2871691,2871819-2872056,2872139-2872204,2872305-2872350,2872460-2872620,2872697-2872826,2872906-2873070,2873144-2873271,2873344-2873443,2873563-2873613	AT5G09230.2  CDS  gene_syn SIRTUIN 2, SRT2, T2K12.8  gene SRT2  function Encodes SRT2, a member of the SIR2 (sirtuin) family HDAC (histone deacetylase) (SRT1/AT5g55760, SRT2/AT5G09230).  go_process chromatin silencing|GO:0006342||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process protein amino acid deacetylation|GO:0006476||IEA  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function NAD-dependent histone deacetylase activity|GO:0017136||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_component chromatin silencing complex|GO:0005677||ISS  go_process chromatin silencing|GO:0006342||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product SRT2 (SIRTUIN 2); DNA binding / NAD or NADH binding / NAD-dependent histone deacetylase/ zinc ion binding  note SIRTUIN 2 (SRT2); FUNCTIONS IN: NAD or NADH binding, DNA binding, zinc ion binding, NAD-dependent histone deacetylase activity; INVOLVED IN: protein amino acid deacetylation, chromatin silencing, regulation of transcription, DNA-dependent; LOCATED IN: chromatin silencing complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent histone deacetylase, silent information regulator Sir2 (InterPro:IPR003000); BEST Arabidopsis thaliana protein match is: SRT1 (sirtuin 1); DNA binding / NAD or NADH binding / NAD-dependent histone deacetylase/ zinc ion binding (TAIR:AT5G55760.1); Has 4043 Blast hits to 4034 proteins in 1066 species: Archae - 102; Bacteria - 1907; Metazoa - 679; Fungi - 475; Plants - 49; Viruses - 0; Other Eukaryotes - 831 (source: NCBI BLink).  protein_id AT5G09230.2p  transcript_id AT5G09230.2  protein_id AT5G09230.2p  transcript_id AT5G09230.2  
At5g09230	chr5:002871655	0.0	W/2871655-2871691,2871819-2872056,2872139-2872204,2872305-2872350,2872460-2872620,2872697-2872826,2872906-2873070,2873144-2873275	AT5G09230.3  CDS  gene_syn SIRTUIN 2, SRT2, T2K12.8  gene SRT2  function Encodes SRT2, a member of the SIR2 (sirtuin) family HDAC (histone deacetylase) (SRT1/AT5g55760, SRT2/AT5G09230).  go_process chromatin silencing|GO:0006342||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process protein amino acid deacetylation|GO:0006476||IEA  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function NAD-dependent histone deacetylase activity|GO:0017136||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_component chromatin silencing complex|GO:0005677||ISS  go_process chromatin silencing|GO:0006342||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product SRT2 (SIRTUIN 2); DNA binding / NAD or NADH binding / NAD-dependent histone deacetylase/ zinc ion binding  note SIRTUIN 2 (SRT2); FUNCTIONS IN: NAD or NADH binding, DNA binding, zinc ion binding, NAD-dependent histone deacetylase activity; INVOLVED IN: protein amino acid deacetylation, chromatin silencing, regulation of transcription, DNA-dependent; LOCATED IN: chromatin silencing complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent histone deacetylase, silent information regulator Sir2 (InterPro:IPR003000); BEST Arabidopsis thaliana protein match is: SRT1 (sirtuin 1); DNA binding / NAD or NADH binding / NAD-dependent histone deacetylase/ zinc ion binding (TAIR:AT5G55760.1); Has 3981 Blast hits to 3977 proteins in 1065 species: Archae - 102; Bacteria - 1900; Metazoa - 673; Fungi - 469; Plants - 49; Viruses - 0; Other Eukaryotes - 788 (source: NCBI BLink).  protein_id AT5G09230.3p  transcript_id AT5G09230.3  protein_id AT5G09230.3p  transcript_id AT5G09230.3  
At5g09230	chr5:002871839	0.0	W/2871839-2872056,2872139-2872204,2872305-2872350,2872460-2872620,2872697-2872826,2872906-2873070,2873144-2873271,2873344-2873443,2873563-2873613	AT5G09230.5  CDS  gene_syn SIRTUIN 2, SRT2, T2K12.8  gene SRT2  function Encodes SRT2, a member of the SIR2 (sirtuin) family HDAC (histone deacetylase) (SRT1/AT5g55760, SRT2/AT5G09230).  go_component mitochondrion|GO:0005739||IEA  go_process chromatin silencing|GO:0006342||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process protein amino acid deacetylation|GO:0006476||IEA  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function NAD-dependent histone deacetylase activity|GO:0017136||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_component chromatin silencing complex|GO:0005677||ISS  go_process chromatin silencing|GO:0006342||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product SRT2 (SIRTUIN 2); DNA binding / NAD or NADH binding / NAD-dependent histone deacetylase/ zinc ion binding  note SIRTUIN 2 (SRT2); FUNCTIONS IN: NAD or NADH binding, DNA binding, zinc ion binding, NAD-dependent histone deacetylase activity; INVOLVED IN: protein amino acid deacetylation, chromatin silencing, regulation of transcription, DNA-dependent; LOCATED IN: mitochondrion, chromatin silencing complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent histone deacetylase, silent information regulator Sir2 (InterPro:IPR003000); BEST Arabidopsis thaliana protein match is: SRT1 (sirtuin 1); DNA binding / NAD or NADH binding / NAD-dependent histone deacetylase/ zinc ion binding (TAIR:AT5G55760.1); Has 4043 Blast hits to 4034 proteins in 1066 species: Archae - 102; Bacteria - 1907; Metazoa - 679; Fungi - 475; Plants - 49; Viruses - 0; Other Eukaryotes - 831 (source: NCBI BLink).  protein_id AT5G09230.5p  transcript_id AT5G09230.5  protein_id AT5G09230.5p  transcript_id AT5G09230.5  
At5g09230	chr5:002872181	0.0	W/2872181-2872204,2872305-2872361,2872460-2872620,2872697-2872826,2872906-2873070,2873144-2873271,2873344-2873443,2873563-2873613	AT5G09230.4  CDS  gene_syn SIRTUIN 2, SRT2, T2K12.8  gene SRT2  function Encodes SRT2, a member of the SIR2 (sirtuin) family HDAC (histone deacetylase) (SRT1/AT5g55760, SRT2/AT5G09230).  go_process chromatin silencing|GO:0006342||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process protein amino acid deacetylation|GO:0006476||IEA  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function NAD-dependent histone deacetylase activity|GO:0017136||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_component chromatin silencing complex|GO:0005677||ISS  go_process chromatin silencing|GO:0006342||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product SRT2 (SIRTUIN 2); DNA binding / NAD or NADH binding / NAD-dependent histone deacetylase/ zinc ion binding  note SIRTUIN 2 (SRT2); FUNCTIONS IN: NAD or NADH binding, DNA binding, zinc ion binding, NAD-dependent histone deacetylase activity; INVOLVED IN: protein amino acid deacetylation, chromatin silencing, regulation of transcription, DNA-dependent; LOCATED IN: chromatin silencing complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent histone deacetylase, silent information regulator Sir2 (InterPro:IPR003000); BEST Arabidopsis thaliana protein match is: SRT1 (sirtuin 1); DNA binding / NAD or NADH binding / NAD-dependent histone deacetylase/ zinc ion binding (TAIR:AT5G55760.1); Has 3428 Blast hits to 3419 proteins in 987 species: Archae - 102; Bacteria - 1679; Metazoa - 657; Fungi - 320; Plants - 46; Viruses - 0; Other Eukaryotes - 624 (source: NCBI BLink).  protein_id AT5G09230.4p  transcript_id AT5G09230.4  protein_id AT5G09230.4p  transcript_id AT5G09230.4  
At5g09230	chr5:002872181	0.0	W/2872181-2872204,2872305-2872361,2872460-2872620,2872697-2872826,2872906-2873070,2873144-2873271,2873344-2873443,2873563-2873613	AT5G09230.6  CDS  gene_syn SIRTUIN 2, SRT2, T2K12.8  gene SRT2  function Encodes SRT2, a member of the SIR2 (sirtuin) family HDAC (histone deacetylase) (SRT1/AT5g55760, SRT2/AT5G09230).  go_process chromatin silencing|GO:0006342||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process protein amino acid deacetylation|GO:0006476||IEA  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function NAD-dependent histone deacetylase activity|GO:0017136||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_component chromatin silencing complex|GO:0005677||ISS  go_process chromatin silencing|GO:0006342||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product SRT2 (SIRTUIN 2); DNA binding / NAD or NADH binding / NAD-dependent histone deacetylase/ zinc ion binding  note SIRTUIN 2 (SRT2); FUNCTIONS IN: NAD or NADH binding, DNA binding, zinc ion binding, NAD-dependent histone deacetylase activity; INVOLVED IN: protein amino acid deacetylation, chromatin silencing, regulation of transcription, DNA-dependent; LOCATED IN: chromatin silencing complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent histone deacetylase, silent information regulator Sir2 (InterPro:IPR003000); BEST Arabidopsis thaliana protein match is: SRT1 (sirtuin 1); DNA binding / NAD or NADH binding / NAD-dependent histone deacetylase/ zinc ion binding (TAIR:AT5G55760.1); Has 3428 Blast hits to 3419 proteins in 987 species: Archae - 102; Bacteria - 1679; Metazoa - 657; Fungi - 320; Plants - 46; Viruses - 0; Other Eukaryotes - 624 (source: NCBI BLink).  protein_id AT5G09230.6p  transcript_id AT5G09230.6  protein_id AT5G09230.6p  transcript_id AT5G09230.6  
At5g09240	chr5:002874649	0.0	C/2874649-2874780,2874424-2874535,2873893-2874065	AT5G09240.2  CDS  gene_syn T2K12.3  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_function transcription coactivator activity|GO:0003713||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription coactivator activity|GO:0003713||ISS  product transcriptional coactivator p15 (PC4) family protein  note transcriptional coactivator p15 (PC4) family protein; FUNCTIONS IN: transcription coactivator activity, binding, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ssDNA-binding transcriptional regulator (InterPro:IPR009044), Transcriptional coactivator p15 (InterPro:IPR003173); BEST Arabidopsis thaliana protein match is: KIWI; DNA binding / protein binding / transcription coactivator (TAIR:AT5G09250.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 2; Plants - 50; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G09240.2p  transcript_id AT5G09240.2  protein_id AT5G09240.2p  transcript_id AT5G09240.2  
At5g09240	chr5:002874649	0.0	C/2874649-2874780,2874424-2874535,2874043-2874065,2873893-2873958	AT5G09240.1  CDS  gene_syn T2K12.3  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_function transcription coactivator activity|GO:0003713||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription coactivator activity|GO:0003713||ISS  product transcriptional coactivator p15 (PC4) family protein  note transcriptional coactivator p15 (PC4) family protein; FUNCTIONS IN: transcription coactivator activity, binding, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ssDNA-binding transcriptional regulator (InterPro:IPR009044), Transcriptional coactivator p15 (InterPro:IPR003173); BEST Arabidopsis thaliana protein match is: KIWI; DNA binding / protein binding / transcription coactivator (TAIR:AT5G09250.1); Has 154 Blast hits to 153 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 78; Fungi - 18; Plants - 51; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G09240.1p  transcript_id AT5G09240.1  protein_id AT5G09240.1p  transcript_id AT5G09240.1  
At5g09240	chr5:002874649	0.0	C/2874649-2874780,2874424-2874535,2874043-2874138,2873936-2873958	AT5G09240.3  CDS  gene_syn T2K12.3  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_function transcription coactivator activity|GO:0003713||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription coactivator activity|GO:0003713||ISS  product transcriptional coactivator p15 (PC4) family protein  note transcriptional coactivator p15 (PC4) family protein; FUNCTIONS IN: transcription coactivator activity, binding, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ssDNA-binding transcriptional regulator (InterPro:IPR009044), Transcriptional coactivator p15 (InterPro:IPR003173); BEST Arabidopsis thaliana protein match is: KIWI; DNA binding / protein binding / transcription coactivator (TAIR:AT5G09250.2); Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G09240.3p  transcript_id AT5G09240.3  protein_id AT5G09240.3p  transcript_id AT5G09240.3  
At5g09250	chr5:002876234	0.0	C/2876234-2876368,2875959-2876081	AT5G09250.2  CDS  gene_syn KIWI, T2K12.10  gene KIWI  function putative transcriptional co-activator (KIWI) mRNA, complete  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription coactivator activity|GO:0003713|9681033|ISS  go_function transcription coactivator activity|GO:0003713||ISS  go_function protein binding|GO:0005515|9681033|IPI  product KIWI; DNA binding / protein binding / transcription coactivator  note KIWI; FUNCTIONS IN: transcription coactivator activity, protein binding, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ssDNA-binding transcriptional regulator (InterPro:IPR009044), Transcriptional coactivator p15 (InterPro:IPR003173); BEST Arabidopsis thaliana protein match is: transcriptional coactivator p15 (PC4) family protein (TAIR:AT5G09240.3); Has 200 Blast hits to 199 proteins in 69 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 27; Plants - 54; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT5G09250.2p  transcript_id AT5G09250.2  protein_id AT5G09250.2p  transcript_id AT5G09250.2  
At5g09250	chr5:002876234	0.0	C/2876234-2876368,2875976-2876081,2875582-2875604,2875421-2875480	AT5G09250.1  CDS  gene_syn KIWI, T2K12.10  gene KIWI  function putative transcriptional co-activator (KIWI) mRNA, complete  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription coactivator activity|GO:0003713|9681033|ISS  go_function transcription coactivator activity|GO:0003713||ISS  go_function protein binding|GO:0005515|9681033|IPI  product KIWI; DNA binding / protein binding / transcription coactivator  note KIWI; FUNCTIONS IN: transcription coactivator activity, protein binding, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional coactivator p15 (InterPro:IPR003173), ssDNA-binding transcriptional regulator (InterPro:IPR009044); BEST Arabidopsis thaliana protein match is: transcriptional coactivator p15 (PC4) family protein (TAIR:AT5G09240.1); Has 292 Blast hits to 286 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 141; Fungi - 67; Plants - 57; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT5G09250.1p  transcript_id AT5G09250.1  protein_id AT5G09250.1p  transcript_id AT5G09250.1  
At5g09260	chr5:002876797	0.0	W/2876797-2876898,2877263-2877415,2877569-2877721,2877878-2877961,2878120-2878252,2878330-2878355	AT5G09260.1  CDS  gene_syn T2K12.4, VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 20.2, VPS20, VPS20.2  gene VPS20.2  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component ESCRT III complex|GO:0000815|17090720|ISS  go_process vesicle-mediated transport|GO:0016192|16488176|ISS  product VPS20.2 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 20.2)  note VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 20.2 (VPS20.2); INVOLVED IN: vesicle-mediated transport, N-terminal protein myristoylation; LOCATED IN: ESCRT III complex, plasma membrane; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: VPS20.1 (TAIR:AT5G63880.1); Has 1386 Blast hits to 1365 proteins in 199 species: Archae - 19; Bacteria - 54; Metazoa - 638; Fungi - 238; Plants - 140; Viruses - 5; Other Eukaryotes - 292 (source: NCBI BLink).  protein_id AT5G09260.1p  transcript_id AT5G09260.1  protein_id AT5G09260.1p  transcript_id AT5G09260.1  
At5g09270	chr5:002879680	0.0	W/2879680-2880015	AT5G09270.1  CDS  gene_syn T2K12.7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 12 Blast hits to 12 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G09270.1p  transcript_id AT5G09270.1  protein_id AT5G09270.1p  transcript_id AT5G09270.1  
At5g09270	chr5:002879680	0.0	W/2879680-2880015	AT5G09270.2  CDS  gene_syn T2K12.7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 12 Blast hits to 12 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G09270.2p  transcript_id AT5G09270.2  protein_id AT5G09270.2p  transcript_id AT5G09270.2  
At5g09280	chr5:002880993	0.0	C/2880993-2881597,2880769-2880904,2880423-2880575	AT5G09280.1  CDS  gene_syn T5E8.80, T5E8_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function lyase activity|GO:0016829||ISS  go_function pectate lyase activity|GO:0030570||ISS  product pectate lyase family protein  note pectate lyase family protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: pectate lyase family protein (TAIR:AT1G30350.1); Has 882 Blast hits to 878 proteins in 158 species: Archae - 0; Bacteria - 361; Metazoa - 0; Fungi - 132; Plants - 384; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G09280.1p  transcript_id AT5G09280.1  protein_id AT5G09280.1p  transcript_id AT5G09280.1  
At5g09290	chr5:002882434	0.0	W/2882434-2882499,2882580-2882655,2882769-2882842,2882918-2883123,2883196-2883385,2883475-2883564,2883663-2883816,2883917-2884098	AT5G09290.1  CDS  gene_syn T5E8.90, T5E8_90  go_process sulfur metabolic process|GO:0006790||IEA  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437||IEA  go_function 3 (2 ),5 -bisphosphate nucleotidase activity|GO:0008441||IEA  go_process sulfur metabolic process|GO:0006790||ISS  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437||ISS  go_function 3 (2 ),5 -bisphosphate nucleotidase activity|GO:0008441||ISS  product 3 (2 ),5 -bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putative  note 3 (2 ),5 -bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putative; FUNCTIONS IN: 3 (2 ),5 -bisphosphate nucleotidase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: sulfur metabolic process; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Inositol monophosphatase (InterPro:IPR000760), 3(2),5 -bisphosphate nucleotidase HAL2 (InterPro:IPR006239); BEST Arabidopsis thaliana protein match is: SAL2; 3 (2 ),5 -bisphosphate nucleotidase/ inositol or phosphatidylinositol phosphatase (TAIR:AT5G64000.1); Has 7391 Blast hits to 7391 proteins in 1133 species: Archae - 37; Bacteria - 3751; Metazoa - 361; Fungi - 190; Plants - 183; Viruses - 0; Other Eukaryotes - 2869 (source: NCBI BLink).  protein_id AT5G09290.1p  transcript_id AT5G09290.1  protein_id AT5G09290.1p  transcript_id AT5G09290.1  
At5g09300	chr5:002886133	0.0	C/2886133-2886291,2885856-2886038,2885522-2885679,2885322-2885421,2885055-2885166,2884815-2884954,2884544-2884729,2884282-2884449	AT5G09300.2  CDS  gene_syn T5E8.100, T5E8_100  go_process metabolic process|GO:0008152||IEA  go_function oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor|GO:0016624||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|14764908|IDA  go_process metabolic process|GO:0008152||ISS  go_function 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity|GO:0003863||ISS  product 2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative  note 2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative; FUNCTIONS IN: oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrogenase, E1 component (InterPro:IPR001017); BEST Arabidopsis thaliana protein match is: 2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative (TAIR:AT1G21400.1); Has 5958 Blast hits to 5956 proteins in 1027 species: Archae - 48; Bacteria - 2954; Metazoa - 450; Fungi - 159; Plants - 112; Viruses - 0; Other Eukaryotes - 2235 (source: NCBI BLink).  protein_id AT5G09300.2p  transcript_id AT5G09300.2  protein_id AT5G09300.2p  transcript_id AT5G09300.2  
At5g09300	chr5:002886564	0.0	C/2886564-2886797,2886133-2886270,2885856-2886038,2885522-2885679,2885322-2885421,2885055-2885166,2884815-2884954,2884544-2884729,2884282-2884449	AT5G09300.1  CDS  gene_syn T5E8.100, T5E8_100  go_process metabolic process|GO:0008152||IEA  go_function oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor|GO:0016624||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|14764908|IDA  go_process metabolic process|GO:0008152||ISS  go_function 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity|GO:0003863||ISS  product 2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative  note 2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative; FUNCTIONS IN: oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrogenase, E1 component (InterPro:IPR001017); BEST Arabidopsis thaliana protein match is: 2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative (TAIR:AT1G21400.1); Has 5958 Blast hits to 5956 proteins in 1027 species: Archae - 48; Bacteria - 2954; Metazoa - 450; Fungi - 159; Plants - 112; Viruses - 0; Other Eukaryotes - 2235 (source: NCBI BLink).  protein_id AT5G09300.1p  transcript_id AT5G09300.1  protein_id AT5G09300.1p  transcript_id AT5G09300.1  
At5g09310	chr5:002888222	0.0	C/2888222-2888501,2887403-2887563	AT5G09310.1  CDS  gene_syn T5E8.110, T5E8_110  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 124 Blast hits to 124 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 102; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G09310.1p  transcript_id AT5G09310.1  protein_id AT5G09310.1p  transcript_id AT5G09310.1  
At5g09320	chr5:002891934	0.0	C/2891934-2892016,2891514-2891661,2891255-2891425,2890988-2891167,2890179-2890866,2889506-2889960,2889007-2889420	AT5G09320.1  CDS  gene_syn T5E8.120, T5E8_120, VPS9B  gene VPS9B  go_component cellular_component|GO:0005575||ND  go_process transport|GO:0006810||ISS  go_function molecular_function|GO:0003674||ND  product VPS9B  note VPS9B; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar sorting protein 9, subgroup (InterPro:IPR013995), Vacuolar sorting protein 9 (InterPro:IPR003123); BEST Arabidopsis thaliana protein match is: VPS9A; Rho guanyl-nucleotide exchange factor (TAIR:AT3G19770.1); Has 924 Blast hits to 913 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 426; Fungi - 141; Plants - 230; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).  protein_id AT5G09320.1p  transcript_id AT5G09320.1  protein_id AT5G09320.1p  transcript_id AT5G09320.1  
At5g09330	chr5:002894552	0.0	C/2894552-2894708,2894195-2894472,2893508-2893933,2892623-2893231	AT5G09330.1  CDS  gene_syn Arabidopsis NAC domain containing protein 82, T5E8.130, T5E8_130, anac082  gene anac082  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac082 (Arabidopsis NAC domain containing protein 82); transcription factor  note Arabidopsis NAC domain containing protein 82 (anac082); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac103 (Arabidopsis NAC domain containing protein 103); transcription factor (TAIR:AT5G64060.1); Has 1931 Blast hits to 1650 proteins in 84 species: Archae - 0; Bacteria - 25; Metazoa - 202; Fungi - 2; Plants - 1575; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).  protein_id AT5G09330.1p  transcript_id AT5G09330.1  protein_id AT5G09330.1p  transcript_id AT5G09330.1  
At5g09330	chr5:002894552	0.0	C/2894552-2894708,2894195-2894472,2893508-2893933,2892623-2893231	AT5G09330.2  CDS  gene_syn Arabidopsis NAC domain containing protein 82, T5E8.130, T5E8_130, anac082  gene anac082  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac082 (Arabidopsis NAC domain containing protein 82); transcription factor  note Arabidopsis NAC domain containing protein 82 (anac082); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac103 (Arabidopsis NAC domain containing protein 103); transcription factor (TAIR:AT5G64060.1); Has 1931 Blast hits to 1650 proteins in 84 species: Archae - 0; Bacteria - 25; Metazoa - 202; Fungi - 2; Plants - 1575; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).  protein_id AT5G09330.2p  transcript_id AT5G09330.2  protein_id AT5G09330.2p  transcript_id AT5G09330.2  
At5g09330	chr5:002894552	0.0	C/2894552-2894708,2894195-2894472,2893508-2893933,2892623-2893231	AT5G09330.3  CDS  gene_syn Arabidopsis NAC domain containing protein 82, T5E8.130, T5E8_130, anac082  gene anac082  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac082 (Arabidopsis NAC domain containing protein 82); transcription factor  note Arabidopsis NAC domain containing protein 82 (anac082); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac103 (Arabidopsis NAC domain containing protein 103); transcription factor (TAIR:AT5G64060.1); Has 1931 Blast hits to 1650 proteins in 84 species: Archae - 0; Bacteria - 25; Metazoa - 202; Fungi - 2; Plants - 1575; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).  protein_id AT5G09330.3p  transcript_id AT5G09330.3  protein_id AT5G09330.3p  transcript_id AT5G09330.3  
At5g09330	chr5:002894552	0.0	C/2894552-2894708,2894195-2894472,2893508-2893933,2892623-2893231	AT5G09330.4  CDS  gene_syn Arabidopsis NAC domain containing protein 82, T5E8.130, T5E8_130, anac082  gene anac082  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac082 (Arabidopsis NAC domain containing protein 82); transcription factor  note Arabidopsis NAC domain containing protein 82 (anac082); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac103 (Arabidopsis NAC domain containing protein 103); transcription factor (TAIR:AT5G64060.1).  protein_id AT5G09330.4p  transcript_id AT5G09330.4  protein_id AT5G09330.4p  transcript_id AT5G09330.4  
At5g09340	chr5:002896675	0.0	C/2896675-2896914	AT5G09340.1  CDS  gene_syn T5E8.140, T5E8_140  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product ubiquitin, putative  note ubiquitin, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: UBQ12 (UBIQUITIN 12); protein binding (TAIR:AT1G55060.1); Has 5688 Blast hits to 2546 proteins in 521 species: Archae - 0; Bacteria - 0; Metazoa - 2476; Fungi - 686; Plants - 1337; Viruses - 132; Other Eukaryotes - 1057 (source: NCBI BLink).  protein_id AT5G09340.1p  transcript_id AT5G09340.1  protein_id AT5G09340.1p  transcript_id AT5G09340.1  
At5g09345	chr5:002898867	0.0	C/2898867-2898950	AT5G09345.1  tRNA  gene_syn 68097.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: CAA)  transcript_id AT5G09345.1  
At5g09350	chr5:002904057	0.0	C/2904057-2905610,2903489-2903680,2903337-2903385,2903007-2903139,2902434-2902869,2902090-2902170,2901884-2902003,2901387-2901456,2901111-2901208,2900916-2901020,2900451-2900504,2900120-2900263,2899974-2900027,2899793-2899867,2899562-2899645,2899365-2899466	AT5G09350.1  CDS  gene_syn PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2, PI-4KBETA2, PI4KBETA2, T5E8.150, T5E8_150  gene PI-4KBETA2  function Encodes a phosphatidylinositol 4-OH kinase, PI-4Kbeta2. Arabidopsis contains 12 PI-4Ks in three separate families: PI-4Kalphs, PI-4kbeta, and PI-4Kgamma. PI-4Kbeta2 is 83% identical to PI-4kbeta1 encoded by At5g64070. Important for polarized root hair growth as the loss of this gene and its close relative PI-4kbeta1, leads to the formation of abnormal root hairs.  go_function inositol or phosphatidylinositol kinase activity|GO:0004428||IEA  go_function binding|GO:0005488||IEA  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_process pollen tube growth|GO:0009860|19208902|IGI  go_process phosphoinositide biosynthetic process|GO:0046489|10026194|TAS  go_process root hair cell tip growth|GO:0048768|16567499|IGI  product PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2); binding / inositol or phosphatidylinositol kinase/ phosphotransferase, alcohol group as acceptor  note PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2 (PI-4KBETA2); FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, binding, phosphotransferase activity, alcohol group as acceptor; INVOLVED IN: phosphoinositide biosynthetic process, root hair cell tip growth, pollen tube growth; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3- and 4-kinase, catalytic (InterPro:IPR000403), Phosphatidylinositol Kinase (InterPro:IPR015433), Armadillo-type fold (InterPro:IPR016024), Phosphatidylinositol 3- and 4-kinase, conserved site (InterPro:IPR018936), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: PI-4KBETA1 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1); 1-phosphatidylinositol 4-kinase (TAIR:AT5G64070.1); Has 6206 Blast hits to 4825 proteins in 292 species: Archae - 4; Bacteria - 98; Metazoa - 2298; Fungi - 870; Plants - 238; Viruses - 53; Other Eukaryotes - 2645 (source: NCBI BLink).  protein_id AT5G09350.1p  transcript_id AT5G09350.1  protein_id AT5G09350.1p  transcript_id AT5G09350.1  
At5g09360	chr5:002908536	0.0	C/2908536-2908658,2908299-2908450,2907967-2908211,2907747-2907878,2906749-2907675,2906426-2906556	AT5G09360.1  CDS  gene_syn LAC14, T5E8.160, T5E8_160, laccase 14  gene LAC14  function putative laccase, a member of laccase family of genes (17 members in Arabidopsis).  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process lignin catabolic process|GO:0046274||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function laccase activity|GO:0008471|15940465|ISS  product LAC14 (laccase 14); laccase  note laccase 14 (LAC14); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: fruit; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: LAC12 (laccase 12); laccase (TAIR:AT5G05390.1); Has 6563 Blast hits to 5726 proteins in 937 species: Archae - 14; Bacteria - 2347; Metazoa - 461; Fungi - 2515; Plants - 885; Viruses - 0; Other Eukaryotes - 341 (source: NCBI BLink).  protein_id AT5G09360.1p  transcript_id AT5G09360.1  protein_id AT5G09360.1p  transcript_id AT5G09360.1  
At5g09370	chr5:002910154	0.0	C/2910154-2910475,2909991-2910026,2909450-2909568	AT5G09370.1  CDS  gene_syn T5E8.170, T5E8_170  go_process lipid transport|GO:0006869||IEA  go_function lipid binding|GO:0008289||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to membrane; EXPRESSED IN: embryo, sepal, pedicel, pollen tube; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT5G64080.2); Has 583 Blast hits to 579 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 583; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G09370.1p  transcript_id AT5G09370.1  protein_id AT5G09370.1p  transcript_id AT5G09370.1  
At5g09370	chr5:002910154	0.0	C/2910154-2910475,2909991-2910026,2909880-2909911	AT5G09370.2  CDS  gene_syn T5E8.170, T5E8_170  go_process lipid transport|GO:0006869||IEA  go_function lipid binding|GO:0008289||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to membrane; EXPRESSED IN: embryo, sepal, pedicel, pollen tube; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT5G64080.2); Has 569 Blast hits to 565 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 569; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G09370.2p  transcript_id AT5G09370.2  protein_id AT5G09370.2p  transcript_id AT5G09370.2  
At5g09380	chr5:002913110	0.0	C/2913110-2913136,2912969-2913024,2912832-2912892,2912697-2912733,2912498-2912572,2912306-2912358,2912153-2912213,2911970-2912052,2911668-2911883,2911313-2911462	AT5G09380.1  CDS  gene_syn T5E8.180, T5E8_180  go_component DNA-directed RNA polymerase III complex|GO:0005666||IEA  go_process transcription from RNA polymerase III promoter|GO:0006383||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product DNA-directed RNA polymerase III RPC4 family protein  note DNA-directed RNA polymerase III RPC4 family protein; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription from RNA polymerase III promoter; LOCATED IN: DNA-directed RNA polymerase III complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase III Rpc4 (InterPro:IPR007811); BEST Arabidopsis thaliana protein match is: DNA binding / DNA-directed RNA polymerase (TAIR:AT4G25180.1); Has 180 Blast hits to 180 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 29; Plants - 34; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT5G09380.1p  transcript_id AT5G09380.1  protein_id AT5G09380.1p  transcript_id AT5G09380.1  
At5g09390	chr5:002913591	0.0	W/2913591-2913664,2913989-2914178,2914304-2914429,2914506-2914679,2914820-2914949,2915039-2915080,2915220-2915391,2915530-2915607,2915734-2915803	AT5G09390.1  CDS  gene_syn T5E8.190, T5E8_190  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product CD2-binding protein-related  note CD2-binding protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 835 Blast hits to 815 proteins in 140 species: Archae - 4; Bacteria - 18; Metazoa - 471; Fungi - 92; Plants - 65; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink).  protein_id AT5G09390.1p  transcript_id AT5G09390.1  protein_id AT5G09390.1p  transcript_id AT5G09390.1  
At5g09390	chr5:002913591	0.0	W/2913591-2913664,2913989-2914178,2914304-2914429,2914506-2914679,2914820-2914949,2915039-2915080,2915220-2915391,2915530-2915607,2915740-2915803	AT5G09390.2  CDS  gene_syn T5E8.190, T5E8_190  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product CD2-binding protein-related  note CD2-binding protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 780 Blast hits to 760 proteins in 140 species: Archae - 4; Bacteria - 16; Metazoa - 417; Fungi - 92; Plants - 63; Viruses - 0; Other Eukaryotes - 188 (source: NCBI BLink).  protein_id AT5G09390.2p  transcript_id AT5G09390.2  protein_id AT5G09390.2p  transcript_id AT5G09390.2  
At5g09400	chr5:002916377	0.0	W/2916377-2916667,2917231-2917459,2917557-2917805,2917915-2917965,2918076-2918336,2918506-2918558,2918675-2918789,2918946-2919200,2919287-2919809,2920055-2920604	AT5G09400.1  CDS  gene_syn KUP7, T5E8.200, T5E8_200  gene KUP7  function potassium transporter  go_component plant-type vacuole|GO:0000325|16618929|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process potassium ion transport|GO:0006813||IEA  go_component vacuolar membrane|GO:0005774|16618929|IDA  go_component membrane|GO:0016020|11500563|NAS  go_process potassium ion transport|GO:0006813||ISS  go_function potassium ion transmembrane transporter activity|GO:0015079||ISS  product KUP7; potassium ion transmembrane transporter  note KUP7; FUNCTIONS IN: potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport; LOCATED IN: vacuolar membrane, plasma membrane, membrane, plant-type vacuole; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Potassium uptake protein, kup (InterPro:IPR018519), K+ potassium transporter (InterPro:IPR003855); BEST Arabidopsis thaliana protein match is: KUP5; potassium ion transmembrane transporter (TAIR:AT4G33530.1); Has 2002 Blast hits to 1966 proteins in 580 species: Archae - 13; Bacteria - 1378; Metazoa - 0; Fungi - 55; Plants - 437; Viruses - 4; Other Eukaryotes - 115 (source: NCBI BLink).  protein_id AT5G09400.1p  transcript_id AT5G09400.1  protein_id AT5G09400.1p  transcript_id AT5G09400.1  
At5g09410	chr5:002921457	0.0	W/2921457-2921505,2921912-2922031,2922359-2922474,2922614-2922702,2923044-2923086,2923204-2923333,2923519-2923572,2923709-2923995,2924497-2924892,2925221-2925909,2926070-2926652,2926752-2927096,2927169-2927291	AT5G09410.2  CDS  gene_syn EICBP.B, ETHYLENE INDUCED CALMODULIN BINDING PROTEIN, T5E8.210, T5E8_210  gene EICBP.B  function calmodulin-binding protein, similar to another ethylene-upregulated calmodulin-binding protein ER1 GI:11612392 from (Nicotiana tabacum)  go_component cellular_component|GO:0005575||ND  go_process response to freezing|GO:0050826|19270186|IMP  go_function calmodulin binding|GO:0005516|11782485|IEP  go_function calmodulin binding|GO:0005516|11782485|TAS  go_function transcription activator activity|GO:0016563|19270186|IDA  go_function transcription regulator activity|GO:0030528|12218065|TAS  product EICBP.B (ETHYLENE INDUCED CALMODULIN BINDING PROTEIN); calmodulin binding / transcription activator/ transcription regulator  note ETHYLENE INDUCED CALMODULIN BINDING PROTEIN (EICBP.B); FUNCTIONS IN: transcription regulator activity, calmodulin binding, transcription activator activity; INVOLVED IN: response to freezing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), CG-1 (InterPro:IPR005559), IQ calmodulin-binding region (InterPro:IPR000048), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: calmodulin-binding protein (TAIR:AT5G64220.2); Has 10015 Blast hits to 6370 proteins in 348 species: Archae - 16; Bacteria - 540; Metazoa - 5123; Fungi - 495; Plants - 502; Viruses - 73; Other Eukaryotes - 3266 (source: NCBI BLink).  protein_id AT5G09410.2p  transcript_id AT5G09410.2  protein_id AT5G09410.2p  transcript_id AT5G09410.2  
At5g09410	chr5:002921457	0.0	W/2921457-2921505,2921912-2922031,2922359-2922474,2922614-2922702,2923044-2923086,2923204-2923333,2923709-2923995,2924497-2924892,2925221-2925909,2926070-2926652,2926752-2927096,2927169-2927291	AT5G09410.1  CDS  gene_syn EICBP.B, ETHYLENE INDUCED CALMODULIN BINDING PROTEIN, T5E8.210, T5E8_210  gene EICBP.B  function calmodulin-binding protein, similar to another ethylene-upregulated calmodulin-binding protein ER1 GI:11612392 from (Nicotiana tabacum)  go_component cellular_component|GO:0005575||ND  go_process response to freezing|GO:0050826|19270186|IMP  go_function calmodulin binding|GO:0005516|11782485|IEP  go_function calmodulin binding|GO:0005516|11782485|TAS  go_function transcription activator activity|GO:0016563|19270186|IDA  go_function transcription regulator activity|GO:0030528|12218065|TAS  product EICBP.B (ETHYLENE INDUCED CALMODULIN BINDING PROTEIN); calmodulin binding / transcription activator/ transcription regulator  note ETHYLENE INDUCED CALMODULIN BINDING PROTEIN (EICBP.B); FUNCTIONS IN: transcription regulator activity, calmodulin binding, transcription activator activity; INVOLVED IN: response to freezing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), CG-1 (InterPro:IPR005559), IQ calmodulin-binding region (InterPro:IPR000048), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: calmodulin-binding protein (TAIR:AT5G64220.2); Has 9977 Blast hits to 6323 proteins in 346 species: Archae - 16; Bacteria - 534; Metazoa - 5101; Fungi - 491; Plants - 500; Viruses - 73; Other Eukaryotes - 3262 (source: NCBI BLink).  protein_id AT5G09410.1p  transcript_id AT5G09410.1  protein_id AT5G09410.1p  transcript_id AT5G09410.1  
At5g09420	chr5:002928316	0.0	W/2928316-2928557,2928762-2928914,2929004-2929128,2929219-2929344,2929453-2929635,2929719-2929863,2930047-2930215,2930387-2930524,2930633-2930833,2930944-2931071,2931151-2931202,2931457-2931526,2931671-2931750	AT5G09420.1  CDS  gene_syn ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, ATTOC64-V, MTOM64, T5E8.220, T5E8_220  gene ATTOC64-V  go_function binding|GO:0005488||IEA  go_function carbon-nitrogen ligase activity, with glutamine as amido-N-donor|GO:0016884||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process protein targeting to mitochondrion|GO:0006626|17981999|IMP  go_function amidase activity|GO:0004040||ISS  product ATTOC64-V (ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V); amidase/ binding / carbon-nitrogen ligase, with glutamine as amido-N-donor  note ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V (ATTOC64-V); FUNCTIONS IN: amidase activity, binding, carbon-nitrogen ligase activity, with glutamine as amido-N-donor; INVOLVED IN: protein targeting to mitochondrion; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Amidase signature enzyme (InterPro:IPR000120), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: atToc64-III (Arabidopsis thaliana translocon at the outer membrane of chloroplasts 64-III); binding / carbon-nitrogen ligase, with glutamine as amido-N-donor (TAIR:AT3G17970.1); Has 20400 Blast hits to 18147 proteins in 1507 species: Archae - 314; Bacteria - 7768; Metazoa - 3275; Fungi - 1578; Plants - 1037; Viruses - 0; Other Eukaryotes - 6428 (source: NCBI BLink).  protein_id AT5G09420.1p  transcript_id AT5G09420.1  protein_id AT5G09420.1p  transcript_id AT5G09420.1  
At5g09430	chr5:002932162	0.0	W/2932162-2932818,2932910-2933002,2933095-2933162,2933245-2933362	AT5G09430.1  CDS  gene_syn T5E8.230, T5E8_230  go_function hydrolase activity|GO:0016787||ISS  product hydrolase  note hydrolase; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT4G39955.1); Has 5456 Blast hits to 5454 proteins in 911 species: Archae - 52; Bacteria - 3574; Metazoa - 316; Fungi - 49; Plants - 217; Viruses - 0; Other Eukaryotes - 1248 (source: NCBI BLink).  protein_id AT5G09430.1p  transcript_id AT5G09430.1  protein_id AT5G09430.1p  transcript_id AT5G09430.1  
At5g09440	chr5:002938397	0.0	W/2938397-2939233	AT5G09440.1  CDS  gene_syn EXL4, EXORDIUM LIKE 4, T5E8.240, T5E8_240  gene EXL4  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product EXL4 (EXORDIUM LIKE 4)  note EXORDIUM LIKE 4 (EXL4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphate-induced protein 1 conserved region (InterPro:IPR006766); BEST Arabidopsis thaliana protein match is: EXL2 (EXORDIUM LIKE 2) (TAIR:AT5G64260.1); Has 233 Blast hits to 233 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 231; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G09440.1p  transcript_id AT5G09440.1  protein_id AT5G09440.1p  transcript_id AT5G09440.1  
At5g09443	chr5:002940525	0.0	C/2940525-2941094	AT5G09443.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT5G09445  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G09443.1  
At5g09445	chr5:002940954	0.0	W/2940954-2941193	AT5G09445.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G09445.1p  transcript_id AT5G09445.1  protein_id AT5G09445.1p  transcript_id AT5G09445.1  
At5g09450	chr5:002941864	0.0	W/2941864-2941898,2941988-2942276,2942419-2943324	AT5G09450.1  CDS  gene_syn T5E8.250, T5E8_250  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G02820.1); Has 2335 Blast hits to 1588 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 6; Plants - 2224; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT5G09450.1p  transcript_id AT5G09450.1  protein_id AT5G09450.1p  transcript_id AT5G09450.1  
At5g09460	chr5:002944437	0.0	C/2944437-2945417	AT5G09460.1  CDS  gene_syn T5E8.260, T5E8_260  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription regulator activity|GO:0030528|12897250|TAS  product transcription factor/ transcription regulator  note transcription factor/ transcription regulator; FUNCTIONS IN: transcription factor activity, transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092); BEST Arabidopsis thaliana protein match is: SAC51 (SUPPRESSOR OF ACAULIS 51); transcription factor/ transcription regulator (TAIR:AT5G64340.1); Has 111 Blast hits to 111 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 1; Plants - 94; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G09460.1p  transcript_id AT5G09460.1  protein_id AT5G09460.1p  transcript_id AT5G09460.1  
At5g09461	chr5:002945855	0.0	C/2945855-2945980,2945714-2945752	AT5G09461.1  CDS  gene_syn CPuORF43, Conserved peptide upstream open reading frame 43  gene CPuORF43  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF43 represents a conserved upstream opening reading frame relative to major ORF AT5G09460.1  product CPuORF43 (Conserved peptide upstream open reading frame 43)  note Conserved peptide upstream open reading frame 43 (CPuORF43); BEST Arabidopsis thaliana protein match is: CPuORF40 (Conserved peptide upstream open reading frame 40) (TAIR:AT5G64341.1); Has 4 Blast hits to 4 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G09461.1p  transcript_id AT5G09461.1  protein_id AT5G09461.1p  transcript_id AT5G09461.1  
At5g09462	chr5:002946091	0.0	C/2946091-2946144	AT5G09462.1  CDS  gene_syn CPuORF42, Conserved peptide upstream open reading frame 42  gene CPuORF42  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF42 represents a conserved upstream opening reading frame relative to major ORF AT5G09460.1  product CPuORF42 (Conserved peptide upstream open reading frame 42)  note Conserved peptide upstream open reading frame 42 (CPuORF42); Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G09462.1p  transcript_id AT5G09462.1  protein_id AT5G09462.1p  transcript_id AT5G09462.1  
At5g09463	chr5:002946219	0.0	C/2946219-2946296	AT5G09463.1  CDS  gene_syn CPuORF41, Conserved peptide upstream open reading frame 41  gene CPuORF41  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF41 represents a conserved upstream opening reading frame relative to major ORF AT5G09460.1  product CPuORF41 (Conserved peptide upstream open reading frame 41)  note Conserved peptide upstream open reading frame 41 (CPuORF41); Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G09463.1p  transcript_id AT5G09463.1  protein_id AT5G09463.1p  transcript_id AT5G09463.1  
At5g09470	chr5:002950087	0.0	C/2950087-2950513,2949241-2949827	AT5G09470.1  CDS  gene_syn T5E8.270, T5E8_270  go_component mitochondrial inner membrane|GO:0005743||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function binding|GO:0005488||ISS  go_function oxidative phosphorylation uncoupler activity|GO:0017077||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: oxidative phosphorylation uncoupler activity, binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: cotyledon, stamen, leaf; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, LP.10 ten leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: mitochondrial substrate carrier family protein (TAIR:AT4G24570.1); Has 17434 Blast hits to 9308 proteins in 349 species: Archae - 0; Bacteria - 0; Metazoa - 8834; Fungi - 4570; Plants - 2485; Viruses - 3; Other Eukaryotes - 1542 (source: NCBI BLink).  protein_id AT5G09470.1p  transcript_id AT5G09470.1  protein_id AT5G09470.1p  transcript_id AT5G09470.1  
At5g09480	chr5:002951181	0.0	C/2951181-2951615	AT5G09480.1  CDS  gene_syn T5E8.280, T5E8_280  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 10097 Blast hits to 3263 proteins in 551 species: Archae - 28; Bacteria - 3055; Metazoa - 1916; Fungi - 503; Plants - 269; Viruses - 205; Other Eukaryotes - 4121 (source: NCBI BLink).  protein_id AT5G09480.1p  transcript_id AT5G09480.1  protein_id AT5G09480.1p  transcript_id AT5G09480.1  
At5g09490	chr5:002953181	0.0	C/2953181-2953183,2952935-2953083,2952790-2952847,2952378-2952626	AT5G09490.1  CDS  gene_syn T5E8.290, T5E8_290  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S15 (RPS15B)  note 40S ribosomal protein S15 (RPS15B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit; CONTAINS InterPro DOMAIN/s: Ribosomal protein S15, eukaryotic/archaeal (InterPro:IPR005713), Ribosomal protein S19/S15 (InterPro:IPR002222); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S15 (RPS15D) (TAIR:AT5G09510.1); Has 5880 Blast hits to 5880 proteins in 1759 species: Archae - 179; Bacteria - 2722; Metazoa - 207; Fungi - 150; Plants - 661; Viruses - 0; Other Eukaryotes - 1961 (source: NCBI BLink).  protein_id AT5G09490.1p  transcript_id AT5G09490.1  protein_id AT5G09490.1p  transcript_id AT5G09490.1  
At5g09500	chr5:002954848	0.0	C/2954848-2954850,2954610-2954752,2954462-2954519,2954044-2954292	AT5G09500.1  CDS  gene_syn T5E8.300, T5E8_300  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S15 (RPS15C)  note 40S ribosomal protein S15 (RPS15C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein S15, eukaryotic/archaeal (InterPro:IPR005713), Ribosomal protein S19/S15 (InterPro:IPR002222); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S15 (RPS15E) (TAIR:AT5G43640.1); Has 4939 Blast hits to 4939 proteins in 1445 species: Archae - 179; Bacteria - 2209; Metazoa - 207; Fungi - 132; Plants - 460; Viruses - 0; Other Eukaryotes - 1752 (source: NCBI BLink).  protein_id AT5G09500.1p  transcript_id AT5G09500.1  protein_id AT5G09500.1p  transcript_id AT5G09500.1  
At5g09510	chr5:002956304	0.0	C/2956304-2956353,2956161-2956218,2955698-2955946	AT5G09510.2  CDS  gene_syn T5E8.310, T5E8_310  go_component plasma membrane|GO:0005886|17151019|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S15 (RPS15D)  note 40S ribosomal protein S15 (RPS15D); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S15, eukaryotic/archaeal (InterPro:IPR005713), Ribosomal protein S19/S15 (InterPro:IPR002222); BEST Arabidopsis thaliana protein match is: RPS15 (CYTOSOLIC RIBOSOMAL PROTEIN S15); structural constituent of ribosome (TAIR:AT1G04270.1); Has 5245 Blast hits to 5245 proteins in 1527 species: Archae - 179; Bacteria - 2329; Metazoa - 207; Fungi - 153; Plants - 526; Viruses - 0; Other Eukaryotes - 1851 (source: NCBI BLink).  protein_id AT5G09510.2p  transcript_id AT5G09510.2  protein_id AT5G09510.2p  transcript_id AT5G09510.2  
At5g09510	chr5:002956552	0.0	C/2956552-2956554,2956304-2956452,2956161-2956218,2955698-2955946	AT5G09510.1  CDS  gene_syn T5E8.310, T5E8_310  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S15 (RPS15D)  note 40S ribosomal protein S15 (RPS15D); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S15, eukaryotic/archaeal (InterPro:IPR005713), Ribosomal protein S19/S15 (InterPro:IPR002222); BEST Arabidopsis thaliana protein match is: RPS15 (CYTOSOLIC RIBOSOMAL PROTEIN S15); structural constituent of ribosome (TAIR:AT1G04270.1); Has 5257 Blast hits to 5257 proteins in 1528 species: Archae - 179; Bacteria - 2329; Metazoa - 207; Fungi - 153; Plants - 533; Viruses - 0; Other Eukaryotes - 1856 (source: NCBI BLink).  protein_id AT5G09510.1p  transcript_id AT5G09510.1  protein_id AT5G09510.1p  transcript_id AT5G09510.1  
At5g09513	chr5:002957217	0.0	C/2957217-2958032	AT5G09513.1  pseudogenic_transcript  pseudo  function pseudogene of hAT dimerisation domain-containing protein  
At5g09520	chr5:002958464	0.0	C/2958464-2958856	AT5G09520.1  CDS  gene_syn T5E8.1  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G09530.1); Has 4217 Blast hits to 1823 proteins in 371 species: Archae - 22; Bacteria - 1606; Metazoa - 1248; Fungi - 178; Plants - 591; Viruses - 62; Other Eukaryotes - 510 (source: NCBI BLink).  protein_id AT5G09520.1p  transcript_id AT5G09520.1  protein_id AT5G09520.1p  transcript_id AT5G09520.1  
At5g09530	chr5:002960080	0.0	C/2960080-2961192	AT5G09530.1  CDS  gene_syn T5E8.2  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G09520.1); Has 49052 Blast hits to 15523 proteins in 1287 species: Archae - 249; Bacteria - 13521; Metazoa - 16469; Fungi - 3857; Plants - 5006; Viruses - 904; Other Eukaryotes - 9046 (source: NCBI BLink).  protein_id AT5G09530.1p  transcript_id AT5G09530.1  protein_id AT5G09530.1p  transcript_id AT5G09530.1  
At5g09540	chr5:002962422	0.0	C/2962422-2963264	AT5G09540.1  CDS  gene_syn F17I14.270, F17I14_270  go_function heat shock protein binding|GO:0031072||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  go_process response to salt stress|GO:0009651|11351099|IEP  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding, response to salt stress; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT5G64360.4); Has 752 Blast hits to 732 proteins in 227 species: Archae - 8; Bacteria - 304; Metazoa - 100; Fungi - 51; Plants - 254; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT5G09540.1p  transcript_id AT5G09540.1  protein_id AT5G09540.1p  transcript_id AT5G09540.1  
At5g09550	chr5:002963850	0.0	W/2963850-2963936,2964303-2964449,2964555-2964662,2964747-2964919,2965006-2965117,2965196-2965276,2965357-2965419,2965522-2965623,2965710-2965834,2965945-2966155,2966244-2966318,2966412-2966465	AT5G09550.1  CDS  gene_syn F17I14.260, F17I14_260  go_process protein transport|GO:0015031||IEA  go_process regulation of GTPase activity|GO:0043087||IEA  go_function RAB GDP-dissociation inhibitor activity|GO:0005093||IEA  go_component cellular_component|GO:0005575||ND  go_process protein transport|GO:0015031||ISS  go_function RAB GDP-dissociation inhibitor activity|GO:0005093||ISS  product RAB GDP-dissociation inhibitor  note RAB GDP-dissociation inhibitor; FUNCTIONS IN: RAB GDP-dissociation inhibitor activity; INVOLVED IN: regulation of GTPase activity, protein transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Rab GTPase activator (InterPro:IPR002005), GDP dissociation inhibitor (InterPro:IPR018203), Rab GDI protein (InterPro:IPR000806); BEST Arabidopsis thaliana protein match is: ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2); RAB GDP-dissociation inhibitor (TAIR:AT3G59920.1); Has 1048 Blast hits to 957 proteins in 194 species: Archae - 0; Bacteria - 1; Metazoa - 598; Fungi - 192; Plants - 108; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT5G09550.1p  transcript_id AT5G09550.1  protein_id AT5G09550.1p  transcript_id AT5G09550.1  
At5g09560	chr5:002967170	0.0	W/2967170-2967736,2967897-2968400,2968506-2968775,2968859-2969209	AT5G09560.1  CDS  gene_syn F17I14.250, F17I14_250  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product KH domain-containing protein  note KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: HEN4 (HUA ENHANCER 4); RNA binding / nucleic acid binding (TAIR:AT5G64390.2); Has 380 Blast hits to 237 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 58; Fungi - 17; Plants - 302; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G09560.1p  transcript_id AT5G09560.1  protein_id AT5G09560.1p  transcript_id AT5G09560.1  
At5g09570	chr5:002970733	0.0	W/2970733-2970754,2971018-2971077,2971166-2971249,2971366-2971520,2971872-2971970	AT5G09570.1  CDS  gene_syn F17I14.240, F17I14_240  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64400.1); Has 141 Blast hits to 141 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 31; Plants - 42; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT5G09570.1p  transcript_id AT5G09570.1  protein_id AT5G09570.1p  transcript_id AT5G09570.1  
At5g09580	chr5:002972639	0.0	W/2972639-2972982,2973060-2973152,2973236-2973398,2973483-2973662,2973777-2973917,2973994-2974076,2974162-2974255,2974355-2974438	AT5G09580.1  CDS  gene_syn F17I14.230, F17I14_230  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53345.1); Has 28 Blast hits to 28 proteins in 8 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G09580.1p  transcript_id AT5G09580.1  protein_id AT5G09580.1p  transcript_id AT5G09580.1  
At5g09585	chr5:002974555	0.0	W/2974555-2975306	AT5G09585.1  snRNA  gene_syn 67606.SNRNA00001, U2 SMALL NUCLEOLAR RNA 5, U2.5  gene U2.5  go_component snRNP U2|GO:0005686||TAS  go_process nuclear mRNA cis splicing, via spliceosome|GO:0045292||TAS  go_function RNA splicing factor activity, transesterification mechanism|GO:0031202||TAS  product U2.5 (U2 SMALL NUCLEOLAR RNA 5); snRNA  note gi|17664|emb|X06476.1|ATU25 Arabidopsis thaliana U2 RNA gene (U2.5)  transcript_id AT5G09585.1  
At5g09590	chr5:002975721	0.0	W/2975721-2975795,2975982-2976058,2976143-2976221,2976315-2976881,2976972-2977592,2977879-2978508	AT5G09590.1  CDS  gene_syn F17I14.220, F17I14_220, HEAT SHOCK COGNATE, HEAT SHOCK PROTEIN 70, HSC70-5, MITOCHONDRIAL HSP70 2, MTHSC70-2  gene MTHSC70-2  function heat shock protein 70 (Hsc70-5); nuclear  go_component cell wall|GO:0005618|16287169|IDA  go_component mitochondrion|GO:0005739|17137349|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|11743114|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial matrix|GO:0005759|11402207|TAS  go_process protein folding|GO:0006457|11402207|TAS  go_process response to heat|GO:0009408|11402207|IEP  go_process response to virus|GO:0009615|15805473|IEP  product MTHSC70-2 (MITOCHONDRIAL HSP70 2); ATP binding  note MITOCHONDRIAL HSP70 2 (MTHSC70-2); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to cadmium ion, response to salt stress, response to virus, response to heat; LOCATED IN: mitochondrion, cell wall, plasma membrane, chloroplast, mitochondrial matrix; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Chaperone DnaK (InterPro:IPR012725), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: mtHsc70-1 (mitochondrial heat shock protein 70-1); ATP binding (TAIR:AT4G37910.1); Has 25445 Blast hits to 25339 proteins in 3119 species: Archae - 103; Bacteria - 10054; Metazoa - 2924; Fungi - 1137; Plants - 703; Viruses - 236; Other Eukaryotes - 10288 (source: NCBI BLink).  protein_id AT5G09590.1p  transcript_id AT5G09590.1  protein_id AT5G09590.1p  transcript_id AT5G09590.1  
At5g09600	chr5:002979220	0.0	W/2979220-2979294,2979767-2979843,2979933-2980005,2980111-2980527	AT5G09600.1  CDS  gene_syn F17I14.210, F17I14_210, SDH3-1  gene SDH3-1  function Encodes one of the membrane anchor subunits of the mitochondrial respiratory complex II. The protein is encoded by the nuclear genome but is imported into the mitochondrion. There are two genes that encode this protein, the other is SDH3-2.  go_component mitochondrion|GO:0005739|12374303|IDA  go_component mitochondrial respiratory chain complex II|GO:0005749|12374303|ISS  go_component membrane|GO:0016020|12374303|ISS  go_process mitochondrial electron transport, succinate to ubiquinone|GO:0006121|12374303|TAS  go_function succinate dehydrogenase activity|GO:0000104|12374303|TAS  product SDH3-1; succinate dehydrogenase  note SDH3-1; FUNCTIONS IN: succinate dehydrogenase activity; INVOLVED IN: mitochondrial electron transport, succinate to ubiquinone; LOCATED IN: mitochondrial respiratory chain complex II, mitochondrion, membrane; EXPRESSED IN: stem, flower, inflorescence; CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase, cytochrome b subunit (InterPro:IPR000701); BEST Arabidopsis thaliana protein match is: SDH3-2; succinate dehydrogenase (TAIR:AT4G32210.1); Has 306 Blast hits to 306 proteins in 89 species: Archae - 0; Bacteria - 35; Metazoa - 42; Fungi - 35; Plants - 67; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).  protein_id AT5G09600.1p  transcript_id AT5G09600.1  protein_id AT5G09600.1p  transcript_id AT5G09600.1  
At5g09600	chr5:002979777	0.0	W/2979777-2979847,2979933-2980005,2980111-2980527	AT5G09600.2  CDS  gene_syn F17I14.210, F17I14_210, SDH3-1  gene SDH3-1  function Encodes one of the membrane anchor subunits of the mitochondrial respiratory complex II. The protein is encoded by the nuclear genome but is imported into the mitochondrion. There are two genes that encode this protein, the other is SDH3-2.  go_component mitochondrion|GO:0005739|12374303|IDA  go_component mitochondrial respiratory chain complex II|GO:0005749|12374303|ISS  go_component membrane|GO:0016020|12374303|ISS  go_process mitochondrial electron transport, succinate to ubiquinone|GO:0006121|12374303|TAS  go_function succinate dehydrogenase activity|GO:0000104|12374303|TAS  product SDH3-1; succinate dehydrogenase  note SDH3-1; FUNCTIONS IN: succinate dehydrogenase activity; INVOLVED IN: mitochondrial electron transport, succinate to ubiquinone; LOCATED IN: mitochondrial respiratory chain complex II, mitochondrion, membrane; EXPRESSED IN: stem, flower, inflorescence; CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase, cytochrome b subunit (InterPro:IPR000701); BEST Arabidopsis thaliana protein match is: SDH3-2; succinate dehydrogenase (TAIR:AT4G32210.1); Has 280 Blast hits to 280 proteins in 82 species: Archae - 0; Bacteria - 35; Metazoa - 42; Fungi - 35; Plants - 41; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).  protein_id AT5G09600.2p  transcript_id AT5G09600.2  protein_id AT5G09600.2p  transcript_id AT5G09600.2  
At5g09610	chr5:002981156	0.0	W/2981156-2982709	AT5G09610.1  CDS  gene_syn APUM21, Arabidopsis Pumilio 21, F17I14.200, F17I14_200  gene APUM21  go_function RNA binding|GO:0003723||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_function RNA binding|GO:0003723||ISS  product APUM21 (Arabidopsis Pumilio 21); RNA binding / binding  note Arabidopsis Pumilio 21 (APUM21); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding region (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: APUM19 (Arabidopsis Pumilio 19); RNA binding / binding (TAIR:AT5G60180.1); Has 4709 Blast hits to 2502 proteins in 171 species: Archae - 2; Bacteria - 3; Metazoa - 590; Fungi - 301; Plants - 241; Viruses - 4; Other Eukaryotes - 3568 (source: NCBI BLink).  protein_id AT5G09610.1p  transcript_id AT5G09610.1  protein_id AT5G09610.1p  transcript_id AT5G09610.1  
At5g09620	chr5:002983757	0.0	C/2983757-2985352	AT5G09620.1  CDS  gene_syn F17I14.190, F17I14_190  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product octicosapeptide/Phox/Bem1p (PB1) domain-containing protein  note octicosapeptide/Phox/Bem1p (PB1) domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (TAIR:AT5G64430.1); Has 17878 Blast hits to 10318 proteins in 471 species: Archae - 0; Bacteria - 445; Metazoa - 7320; Fungi - 1844; Plants - 1595; Viruses - 152; Other Eukaryotes - 6522 (source: NCBI BLink).  protein_id AT5G09620.1p  transcript_id AT5G09620.1  protein_id AT5G09620.1p  transcript_id AT5G09620.1  
At5g09630	chr5:002986016	0.0	C/2986016-2987176	AT5G09630.1  CDS  gene_syn F17I14.180, F17I14_180  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), CT11-RanBPM (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT2G22690.2); Has 613 Blast hits to 613 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 329; Fungi - 144; Plants - 68; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT5G09630.1p  transcript_id AT5G09630.1  protein_id AT5G09630.1p  transcript_id AT5G09630.1  
At5g09640	chr5:002988373	0.0	W/2988373-2988503,2988605-2988750,2988904-2988980,2989073-2989195,2989294-2989396,2989480-2989517,2989607-2989708,2989796-2989882,2989968-2990123,2990210-2990281,2990346-2990464,2990552-2990668,2990752-2990797,2990886-2990966	AT5G09640.1  CDS  gene_syn F17I14.170, F17I14_170, SCPL19, SINAPOYLGLUCOSE ACCUMULATOR 2, SNG2  gene SCPL19  function encodes a serine carboxypeptidase-like (SCPL) protein. Mutants accumulate sinapoylglucose instead of sinapoylcholine, and have increased levels of choline and decreased activity of the enzyme sinapoylglucose:choline sinapoyltransferase.  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||ISS  go_process secondary metabolic process|GO:0019748||IMP  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  go_function sinapoyltransferase activity|GO:0016752||IMP  product SCPL19; serine-type carboxypeptidase/ sinapoyltransferase  note SCPL19; FUNCTIONS IN: sinapoyltransferase activity, serine-type carboxypeptidase activity; INVOLVED IN: proteolysis, secondary metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: seed; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl3 (serine carboxypeptidase-like 3); serine-type carboxypeptidase (TAIR:AT1G73280.1); Has 2620 Blast hits to 2572 proteins in 305 species: Archae - 0; Bacteria - 213; Metazoa - 558; Fungi - 547; Plants - 974; Viruses - 0; Other Eukaryotes - 328 (source: NCBI BLink).  protein_id AT5G09640.1p  transcript_id AT5G09640.1  protein_id AT5G09640.1p  transcript_id AT5G09640.1  
At5g09650	chr5:002992851	0.0	C/2992851-2993117,2992234-2992394,2991973-2992073,2991702-2991883,2991518-2991616,2991331-2991423	AT5G09650.1  CDS  gene_syn Arabidopsis thaliana pyrophosphorylase 6, AtPPa6, F17I14.160, F17I14_160  gene AtPPa6  function Encodes a protein with inorganic pyrophosphatase activity.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component chloroplast stroma|GO:0009570|15135060|IDA  go_component membrane|GO:0016020||ISS  go_process metabolic process|GO:0008152||ISS  go_process response to sucrose stimulus|GO:0009744|15135060|IEP  go_process response to glucose stimulus|GO:0009749|15135060|IEP  go_process response to fructose stimulus|GO:0009750|15135060|IEP  go_function inorganic diphosphatase activity|GO:0004427|15135060|IDA  go_function inorganic diphosphatase activity|GO:0004427|15135060|IGI  go_function pyrophosphatase activity|GO:0016462||ISS  product AtPPa6 (Arabidopsis thaliana pyrophosphorylase 6); inorganic diphosphatase/ pyrophosphatase  note Arabidopsis thaliana pyrophosphorylase 6 (AtPPa6); FUNCTIONS IN: inorganic diphosphatase activity, pyrophosphatase activity; INVOLVED IN: in 7 processes; LOCATED IN: thylakoid, chloroplast, chloroplast stroma, membrane, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Inorganic pyrophosphatase (InterPro:IPR008162); BEST Arabidopsis thaliana protein match is: AtPPa5 (Arabidopsis thaliana pyrophosphorylase 5); inorganic diphosphatase/ pyrophosphatase (TAIR:AT4G01480.1); Has 3323 Blast hits to 3322 proteins in 843 species: Archae - 105; Bacteria - 2125; Metazoa - 208; Fungi - 214; Plants - 181; Viruses - 0; Other Eukaryotes - 490 (source: NCBI BLink).  protein_id AT5G09650.1p  transcript_id AT5G09650.1  protein_id AT5G09650.1p  transcript_id AT5G09650.1  
At5g09655	chr5:002993327	0.0	W/2993327-2993400	AT5G09655.1  tRNA  gene_syn 67606.TRNA-VAL-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Val (anticodon: AAC)  transcript_id AT5G09655.1  
At5g09660	chr5:002994951	0.0	C/2994951-2995169,2994548-2994862,2994373-2994462,2994166-2994285,2993810-2994067,2993691-2993717	AT5G09660.3  CDS  gene_syn F17I14.150, F17I14_150, PMDH2, peroxisomal NAD-malate dehydrogenase 2  gene PMDH2  function encodes a microbody NAD-dependent malate dehydrogenase encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_component peroxisome|GO:0005777|17376163|IDA  go_component microbody|GO:0042579|9774405|ISS  go_process regulation of fatty acid beta-oxidation|GO:0031998|17376163|IGI  go_process regulation of fatty acid beta-oxidation|GO:0031998|17376163|IMP  go_process regulation of photorespiration|GO:0080093|18685043|IMP  go_function malate dehydrogenase activity|GO:0016615|9774405|ISS  product PMDH2 (peroxisomal NAD-malate dehydrogenase 2); malate dehydrogenase  note peroxisomal NAD-malate dehydrogenase 2 (PMDH2); FUNCTIONS IN: malate dehydrogenase activity; INVOLVED IN: regulation of photorespiration, regulation of fatty acid beta-oxidation; LOCATED IN: apoplast, chloroplast, peroxisome, microbody; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Malate dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria (InterPro:IPR010097), NAD(P)-binding (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Lactate/malate dehydrogenase (InterPro:IPR001236), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1); L-malate dehydrogenase/ binding / catalytic/ malate dehydrogenase/ oxidoreductase/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor (TAIR:AT2G22780.1); Has 9844 Blast hits to 9842 proteins in 2386 species: Archae - 175; Bacteria - 5718; Metazoa - 947; Fungi - 356; Plants - 403; Viruses - 0; Other Eukaryotes - 2245 (source: NCBI BLink).  protein_id AT5G09660.3p  transcript_id AT5G09660.3  protein_id AT5G09660.3p  transcript_id AT5G09660.3  
At5g09660	chr5:002994951	0.0	C/2994951-2995169,2994548-2994862,2994373-2994462,2994166-2994285,2993978-2994067,2993810-2993904,2993645-2993717	AT5G09660.2  CDS  gene_syn F17I14.150, F17I14_150, PMDH2, peroxisomal NAD-malate dehydrogenase 2  gene PMDH2  function encodes a microbody NAD-dependent malate dehydrogenase encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.  go_component vacuole|GO:0005773|15539469|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_component peroxisome|GO:0005777|17376163|IDA  go_component microbody|GO:0042579|9774405|ISS  go_process regulation of fatty acid beta-oxidation|GO:0031998|17376163|IGI  go_process regulation of fatty acid beta-oxidation|GO:0031998|17376163|IMP  go_process regulation of photorespiration|GO:0080093|18685043|IMP  go_function malate dehydrogenase activity|GO:0016615|9774405|ISS  product PMDH2 (peroxisomal NAD-malate dehydrogenase 2); malate dehydrogenase  note peroxisomal NAD-malate dehydrogenase 2 (PMDH2); FUNCTIONS IN: malate dehydrogenase activity; INVOLVED IN: regulation of photorespiration, regulation of fatty acid beta-oxidation; LOCATED IN: apoplast, chloroplast, peroxisome, vacuole, microbody; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Malate dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria (InterPro:IPR010097), NAD(P)-binding (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Lactate/malate dehydrogenase (InterPro:IPR001236), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1); L-malate dehydrogenase/ binding / catalytic/ malate dehydrogenase/ oxidoreductase/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor (TAIR:AT2G22780.1); Has 10113 Blast hits to 10111 proteins in 2396 species: Archae - 175; Bacteria - 5745; Metazoa - 958; Fungi - 358; Plants - 590; Viruses - 0; Other Eukaryotes - 2287 (source: NCBI BLink).  protein_id AT5G09660.2p  transcript_id AT5G09660.2  protein_id AT5G09660.2p  transcript_id AT5G09660.2  
At5g09660	chr5:002995489	0.0	C/2995489-2995551,2994951-2995169,2994548-2994862,2994373-2994462,2994166-2994285,2993810-2994067,2993691-2993717	AT5G09660.4  CDS  gene_syn F17I14.150, F17I14_150, PMDH2, peroxisomal NAD-malate dehydrogenase 2  gene PMDH2  function encodes a microbody NAD-dependent malate dehydrogenase encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_component peroxisome|GO:0005777|17376163|IDA  go_component microbody|GO:0042579|9774405|ISS  go_process regulation of fatty acid beta-oxidation|GO:0031998|17376163|IGI  go_process regulation of fatty acid beta-oxidation|GO:0031998|17376163|IMP  go_process regulation of photorespiration|GO:0080093|18685043|IMP  go_function malate dehydrogenase activity|GO:0016615|9774405|ISS  product PMDH2 (peroxisomal NAD-malate dehydrogenase 2); malate dehydrogenase  note peroxisomal NAD-malate dehydrogenase 2 (PMDH2); FUNCTIONS IN: malate dehydrogenase activity; INVOLVED IN: regulation of photorespiration, regulation of fatty acid beta-oxidation; LOCATED IN: apoplast, chloroplast, peroxisome, microbody; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Malate dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria (InterPro:IPR010097), NAD(P)-binding (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Lactate/malate dehydrogenase (InterPro:IPR001236), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1); L-malate dehydrogenase/ binding / catalytic/ malate dehydrogenase/ oxidoreductase/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor (TAIR:AT2G22780.1); Has 9863 Blast hits to 9861 proteins in 2386 species: Archae - 175; Bacteria - 5727; Metazoa - 950; Fungi - 362; Plants - 404; Viruses - 0; Other Eukaryotes - 2245 (source: NCBI BLink).  protein_id AT5G09660.4p  transcript_id AT5G09660.4  protein_id AT5G09660.4p  transcript_id AT5G09660.4  
At5g09660	chr5:002995489	0.0	C/2995489-2995551,2994951-2995169,2994548-2994862,2994373-2994462,2994166-2994285,2993978-2994067,2993810-2993904,2993645-2993717	AT5G09660.1  CDS  gene_syn F17I14.150, F17I14_150, PMDH2, peroxisomal NAD-malate dehydrogenase 2  gene PMDH2  function encodes a microbody NAD-dependent malate dehydrogenase encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.  go_component vacuole|GO:0005773|15539469|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_component peroxisome|GO:0005777|17376163|IDA  go_component microbody|GO:0042579|9774405|ISS  go_process regulation of fatty acid beta-oxidation|GO:0031998|17376163|IGI  go_process regulation of fatty acid beta-oxidation|GO:0031998|17376163|IMP  go_process regulation of photorespiration|GO:0080093|18685043|IMP  go_function malate dehydrogenase activity|GO:0016615|9774405|ISS  product PMDH2 (peroxisomal NAD-malate dehydrogenase 2); malate dehydrogenase  note peroxisomal NAD-malate dehydrogenase 2 (PMDH2); FUNCTIONS IN: malate dehydrogenase activity; INVOLVED IN: regulation of photorespiration, regulation of fatty acid beta-oxidation; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Malate dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria (InterPro:IPR010097), NAD(P)-binding (InterPro:IPR016040), Lactate/malate dehydrogenase (InterPro:IPR001236), L-lactate/malate dehydrogenase (InterPro:IPR001557), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1); L-malate dehydrogenase/ binding / catalytic/ malate dehydrogenase/ oxidoreductase/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor (TAIR:AT2G22780.1); Has 10113 Blast hits to 10111 proteins in 2396 species: Archae - 175; Bacteria - 5745; Metazoa - 958; Fungi - 358; Plants - 590; Viruses - 0; Other Eukaryotes - 2287 (source: NCBI BLink).  protein_id AT5G09660.1p  transcript_id AT5G09660.1  protein_id AT5G09660.1p  transcript_id AT5G09660.1  
At5g09670	chr5:002996109	0.0	C/2996109-2997749	AT5G09670.1  CDS  gene_syn F17I14.140, F17I14_140  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product loricrin-related  note loricrin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: loricrin-related (TAIR:AT5G64550.1); Has 1766 Blast hits to 1228 proteins in 118 species: Archae - 0; Bacteria - 20; Metazoa - 1239; Fungi - 20; Plants - 209; Viruses - 3; Other Eukaryotes - 275 (source: NCBI BLink).  protein_id AT5G09670.1p  transcript_id AT5G09670.1  protein_id AT5G09670.1p  transcript_id AT5G09670.1  
At5g09670	chr5:002996109	0.0	C/2996109-2997749	AT5G09670.2  CDS  gene_syn F17I14.140, F17I14_140  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product loricrin-related  note loricrin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: loricrin-related (TAIR:AT5G64550.1); Has 1766 Blast hits to 1228 proteins in 118 species: Archae - 0; Bacteria - 20; Metazoa - 1239; Fungi - 20; Plants - 209; Viruses - 3; Other Eukaryotes - 275 (source: NCBI BLink).  protein_id AT5G09670.2p  transcript_id AT5G09670.2  protein_id AT5G09670.2p  transcript_id AT5G09670.2  
At5g09672	chr5:002997844	0.0	C/2997844-2997942	AT5G09672.1  CDS  gene_syn CPuORF21, Conserved peptide upstream open reading frame 21  gene CPuORF21  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF21 represents a conserved upstream opening reading frame relative to major ORF AT5G09670.1  product CPuORF21 (Conserved peptide upstream open reading frame 21)  note Conserved peptide upstream open reading frame 21 (CPuORF21); Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G09672.1p  transcript_id AT5G09672.1  protein_id AT5G09672.1p  transcript_id AT5G09672.1  
At5g09680	chr5:003000147	0.0	C/3000147-3000185,2999730-3000045,2999362-2999642	AT5G09680.1  CDS  gene_syn F17I14.130, F17I14_130  go_function heme binding|GO:0020037||IEA  go_component cellular_component|GO:0005575||ND  product cytochrome b5 domain-containing protein  note cytochrome b5 domain-containing protein; FUNCTIONS IN: heme binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome b5, heme-binding site (InterPro:IPR018506), Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: CB5-A (CYTOCHROME B5 ISOFORM A); heme binding (TAIR:AT1G26340.1); Has 2233 Blast hits to 2217 proteins in 344 species: Archae - 1; Bacteria - 7; Metazoa - 608; Fungi - 741; Plants - 527; Viruses - 0; Other Eukaryotes - 349 (source: NCBI BLink).  protein_id AT5G09680.1p  transcript_id AT5G09680.1  protein_id AT5G09680.1p  transcript_id AT5G09680.1  
At5g09680	chr5:003000147	0.0	C/3000147-3000185,2999730-3000045,2999362-2999642	AT5G09680.2  CDS  gene_syn F17I14.130, F17I14_130  go_function heme binding|GO:0020037||IEA  go_component cellular_component|GO:0005575||ND  product cytochrome b5 domain-containing protein  note cytochrome b5 domain-containing protein; FUNCTIONS IN: heme binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome b5, heme-binding site (InterPro:IPR018506), Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: CB5-A (CYTOCHROME B5 ISOFORM A); heme binding (TAIR:AT1G26340.1); Has 2233 Blast hits to 2217 proteins in 344 species: Archae - 1; Bacteria - 7; Metazoa - 608; Fungi - 741; Plants - 527; Viruses - 0; Other Eukaryotes - 349 (source: NCBI BLink).  protein_id AT5G09680.2p  transcript_id AT5G09680.2  protein_id AT5G09680.2p  transcript_id AT5G09680.2  
At5g09690	chr5:003002918	0.0	C/3002918-3003169,3002806-3002835,3002531-3002654,3002268-3002389,3002104-3002178,3001716-3001946,3001489-3001533,3001374-3001403,3001165-3001284,3000990-3001076	AT5G09690.4  CDS  gene_syn F17I14.120, F17I14_120  go_component membrane|GO:0016020||IEA  go_process metal ion transport|GO:0030001||IEA  go_function metal ion transmembrane transporter activity|GO:0046873||IEA  go_component membrane|GO:0016020||ISS  go_process metal ion transport|GO:0030001||ISS  go_function metal ion transmembrane transporter activity|GO:0046873||ISS  product magnesium transporter CorA-like family protein (MRS2-7)  note magnesium transporter CorA-like family protein (MRS2-7); FUNCTIONS IN: metal ion transmembrane transporter activity; INVOLVED IN: metal ion transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mg2+ transporter protein, CorA-like (InterPro:IPR002523); BEST Arabidopsis thaliana protein match is: magnesium transporter CorA-like family protein (MRS2-2) (TAIR:AT5G64560.1); Has 454 Blast hits to 448 proteins in 110 species: Archae - 0; Bacteria - 4; Metazoa - 58; Fungi - 134; Plants - 196; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT5G09690.4p  transcript_id AT5G09690.4  protein_id AT5G09690.4p  transcript_id AT5G09690.4  
At5g09690	chr5:003002918	0.0	C/3002918-3003169,3002806-3002835,3002531-3002654,3002268-3002389,3002104-3002178,3001716-3001946,3001608-3001652,3001489-3001533,3001374-3001403,3001165-3001284,3000990-3001076	AT5G09690.1  CDS  gene_syn F17I14.120, F17I14_120  go_component membrane|GO:0016020||IEA  go_process metal ion transport|GO:0030001||IEA  go_function metal ion transmembrane transporter activity|GO:0046873||IEA  go_component membrane|GO:0016020||ISS  go_process metal ion transport|GO:0030001||ISS  go_function metal ion transmembrane transporter activity|GO:0046873||ISS  product magnesium transporter CorA-like family protein (MRS2-7)  note magnesium transporter CorA-like family protein (MRS2-7); FUNCTIONS IN: metal ion transmembrane transporter activity; INVOLVED IN: metal ion transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mg2+ transporter protein, CorA-like (InterPro:IPR002523); BEST Arabidopsis thaliana protein match is: magnesium transporter CorA-like family protein (MRS2-2) (TAIR:AT5G64560.1); Has 461 Blast hits to 455 proteins in 112 species: Archae - 0; Bacteria - 7; Metazoa - 58; Fungi - 134; Plants - 197; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT5G09690.1p  transcript_id AT5G09690.1  protein_id AT5G09690.1p  transcript_id AT5G09690.1  
At5g09690	chr5:003002918	0.0	C/3002918-3003169,3002806-3002835,3002531-3002654,3002268-3002389,3002104-3002178,3001716-3001946,3001608-3001652,3001489-3001533,3001374-3001403,3001233-3001262	AT5G09690.3  CDS  gene_syn F17I14.120, F17I14_120  go_component membrane|GO:0016020||IEA  go_process metal ion transport|GO:0030001||IEA  go_function metal ion transmembrane transporter activity|GO:0046873||IEA  go_component membrane|GO:0016020||ISS  go_process metal ion transport|GO:0030001||ISS  go_function metal ion transmembrane transporter activity|GO:0046873||ISS  product magnesium transporter CorA-like family protein (MRS2-7)  note magnesium transporter CorA-like family protein (MRS2-7); FUNCTIONS IN: metal ion transmembrane transporter activity; INVOLVED IN: metal ion transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mg2+ transporter protein, CorA-like (InterPro:IPR002523); BEST Arabidopsis thaliana protein match is: magnesium transporter CorA-like family protein (MRS2-2) (TAIR:AT5G64560.2); Has 412 Blast hits to 408 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 54; Fungi - 132; Plants - 194; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT5G09690.3p  transcript_id AT5G09690.3  protein_id AT5G09690.3p  transcript_id AT5G09690.3  
At5g09690	chr5:003003413	0.0	C/3003413-3003415,3002918-3003199,3002806-3002835,3002531-3002654,3002268-3002389,3002104-3002178,3001716-3001946,3001608-3001652,3001489-3001533,3001374-3001403,3001165-3001284,3000990-3001076	AT5G09690.2  CDS  gene_syn F17I14.120, F17I14_120  go_component membrane|GO:0016020||IEA  go_process metal ion transport|GO:0030001||IEA  go_function metal ion transmembrane transporter activity|GO:0046873||IEA  go_component membrane|GO:0016020||ISS  go_process metal ion transport|GO:0030001||ISS  go_function metal ion transmembrane transporter activity|GO:0046873||ISS  product magnesium transporter CorA-like family protein (MRS2-7)  note magnesium transporter CorA-like family protein (MRS2-7); FUNCTIONS IN: metal ion transmembrane transporter activity; INVOLVED IN: metal ion transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mg2+ transporter protein, CorA-like (InterPro:IPR002523); BEST Arabidopsis thaliana protein match is: magnesium transporter CorA-like family protein (MRS2-2) (TAIR:AT5G64560.1); Has 461 Blast hits to 455 proteins in 112 species: Archae - 0; Bacteria - 7; Metazoa - 58; Fungi - 134; Plants - 197; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT5G09690.2p  transcript_id AT5G09690.2  protein_id AT5G09690.2p  transcript_id AT5G09690.2  
At5g09700	chr5:003003720	0.0	C/3003720-3005566	AT5G09700.1  pseudogenic_transcript  pseudo  gene_syn F17I14.110, F17I14_110  function pseudogene of glycosyl hydrolase family 3 protein  note similar to XYL4 (beta-xylosidase 4), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT5G64570.1); similar to BXL3 (BETA-XYLOSIDASE 3), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT5G09730.1); similar to alpha-L-arabinofuranosidase [Raphanus sativus] (GB:BAE44362.1); contains InterPro domain Glycoside hydrolase, family 3, C-terminal; (InterPro:IPR002772)  
At5g09710	chr5:003010755	0.0	C/3010755-3010988,3010628-3010657,3009872-3009968,3009614-3009735,3008733-3008942,3008585-3008629,3008461-3008505,3008086-3008202,3007909-3007995	AT5G09710.1  CDS  gene_syn F17I14.100, F17I14_100  go_component membrane|GO:0016020||IEA  go_process metal ion transport|GO:0030001||IEA  go_function metal ion transmembrane transporter activity|GO:0046873||IEA  go_component membrane|GO:0016020||ISS  go_process metal ion transport|GO:0030001||ISS  go_function metal ion transmembrane transporter activity|GO:0046873||ISS  product magnesium transporter CorA-like family protein  note magnesium transporter CorA-like family protein; FUNCTIONS IN: metal ion transmembrane transporter activity; INVOLVED IN: metal ion transport; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Mg2+ transporter protein, CorA-like (InterPro:IPR002523); BEST Arabidopsis thaliana protein match is: magnesium transporter CorA-like family protein (MRS2-2) (TAIR:AT5G64560.1); Has 337 Blast hits to 323 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 43; Fungi - 87; Plants - 192; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT5G09710.1p  transcript_id AT5G09710.1  protein_id AT5G09710.1p  transcript_id AT5G09710.1  
At5g09711	chr5:003011010	0.0	C/3011010-3011147	AT5G09711.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G09711.1p  transcript_id AT5G09711.1  protein_id AT5G09711.1p  transcript_id AT5G09711.1  
At5g09720	chr5:003014172	0.0	C/3014172-3014399,3014037-3014066,3013654-3013777,3013388-3013509,3013223-3013297,3012719-3012958,3012595-3012640,3012328-3012347	AT5G09720.1  CDS  gene_syn F17I14.90, F17I14_90  go_component membrane|GO:0016020||IEA  go_process metal ion transport|GO:0030001||IEA  go_function metal ion transmembrane transporter activity|GO:0046873||IEA  go_component membrane|GO:0016020||ISS  go_process metal ion transport|GO:0030001||ISS  go_function metal ion transmembrane transporter activity|GO:0046873||ISS  product metal ion transmembrane transporter  note metal ion transmembrane transporter; FUNCTIONS IN: metal ion transmembrane transporter activity; INVOLVED IN: metal ion transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Mg2+ transporter protein, CorA-like (InterPro:IPR002523); BEST Arabidopsis thaliana protein match is: magnesium transporter CorA-like family protein (MRS2-7) (TAIR:AT5G09690.3); Has 239 Blast hits to 235 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 29; Plants - 178; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT5G09720.1p  transcript_id AT5G09720.1  protein_id AT5G09720.1p  transcript_id AT5G09720.1  
At5g09730	chr5:003017807	0.0	C/3017807-3018226,3017325-3017612,3017036-3017205,3016509-3016957,3015999-3016406,3015319-3015905	AT5G09730.1  CDS  gene_syn ATBX3, ATBXL3, BETA-XYLOSIDASE 3, BX3, BXL3, F17I14.80, F17I14_80, XYL3  gene BXL3  function encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BXL3 (beta-xylosidase 3); hydrolase, hydrolyzing O-glycosyl compounds  note BETA-XYLOSIDASE 3 (BXL3); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: XYL4; hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase (TAIR:AT5G64570.1); Has 5156 Blast hits to 4586 proteins in 668 species: Archae - 16; Bacteria - 2504; Metazoa - 9; Fungi - 913; Plants - 288; Viruses - 0; Other Eukaryotes - 1426 (source: NCBI BLink).  protein_id AT5G09730.1p  transcript_id AT5G09730.1  protein_id AT5G09730.1p  transcript_id AT5G09730.1  
At5g09740	chr5:003024405	0.0	C/3024405-3024711,3023971-3024059,3023809-3023868,3023515-3023724,3023180-3023248,3022849-3023010,3022675-3022768,3022446-3022588,3022141-3022344	AT5G09740.1  CDS  gene_syn F17I14.70, F17I14_70, HAM2, histone acetyltransferase of the MYST family 2  gene HAM2  function Encodes an enzyme with histone acetyltransferase activity. HAM2 primarily acetylate histone H4, but also display some ability to acetylate H3. Prior acetylation of lysine 5 on histone H4 reduces radioactive acetylation by either HAM2.  go_process chromatin assembly or disassembly|GO:0006333||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634|17877703|IDA  go_function nucleic acid binding|GO:0003676||ISS  go_function histone acetyltransferase activity|GO:0004402|12466527|ISS  go_function H3/H4 histone acetyltransferase activity|GO:0004406|17877703|IDA  go_function zinc ion binding|GO:0008270||ISS  product HAM2 (histone acetyltransferase of the MYST family 2); H3/H4 histone acetyltransferase/ histone acetyltransferase/ nucleic acid binding / zinc ion binding  note histone acetyltransferase of the MYST family 2 (HAM2); FUNCTIONS IN: histone acetyltransferase activity, zinc ion binding, nucleic acid binding, H3/H4 histone acetyltransferase activity; INVOLVED IN: chromatin assembly or disassembly, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), MOZ/SAS-like protein (InterPro:IPR002717), Acyl-CoA N-acyltransferase (InterPro:IPR016181), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: HAM1 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 1); H3/H4 histone acetyltransferase/ histone acetyltransferase/ nucleic acid binding / zinc ion binding (TAIR:AT5G64610.1); Has 1312 Blast hits to 1262 proteins in 171 species: Archae - 0; Bacteria - 2; Metazoa - 781; Fungi - 303; Plants - 49; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).  protein_id AT5G09740.1p  transcript_id AT5G09740.1  protein_id AT5G09740.1p  transcript_id AT5G09740.1  
At5g09740	chr5:003024405	0.0	C/3024405-3024711,3023971-3024059,3023809-3023868,3023662-3023724,3022849-3022992,3022675-3022768,3022446-3022588,3022141-3022344	AT5G09740.2  CDS  gene_syn F17I14.70, F17I14_70, HAM2, histone acetyltransferase of the MYST family 2  gene HAM2  function Encodes an enzyme with histone acetyltransferase activity. HAM2 primarily acetylate histone H4, but also display some ability to acetylate H3. Prior acetylation of lysine 5 on histone H4 reduces radioactive acetylation by either HAM2.  go_process chromatin assembly or disassembly|GO:0006333||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634|17877703|IDA  go_function nucleic acid binding|GO:0003676||ISS  go_function histone acetyltransferase activity|GO:0004402|12466527|ISS  go_function H3/H4 histone acetyltransferase activity|GO:0004406|17877703|IDA  go_function zinc ion binding|GO:0008270||ISS  product HAM2 (histone acetyltransferase of the MYST family 2); H3/H4 histone acetyltransferase/ histone acetyltransferase/ nucleic acid binding / zinc ion binding  note histone acetyltransferase of the MYST family 2 (HAM2); FUNCTIONS IN: histone acetyltransferase activity, zinc ion binding, nucleic acid binding, H3/H4 histone acetyltransferase activity; INVOLVED IN: chromatin assembly or disassembly, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Chromo domain (InterPro:IPR000953), MOZ/SAS-like protein (InterPro:IPR002717), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: HAM1 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 1); H3/H4 histone acetyltransferase/ histone acetyltransferase/ nucleic acid binding / zinc ion binding (TAIR:AT5G64610.1); Has 1502 Blast hits to 1246 proteins in 171 species: Archae - 0; Bacteria - 2; Metazoa - 903; Fungi - 320; Plants - 82; Viruses - 0; Other Eukaryotes - 195 (source: NCBI BLink).  protein_id AT5G09740.2p  transcript_id AT5G09740.2  protein_id AT5G09740.2p  transcript_id AT5G09740.2  
At5g09750	chr5:003026401	0.0	C/3026401-3027075	AT5G09750.1  CDS  gene_syn F17I14.60, F17I14_60, HEC3, HECATE 3  gene HEC3  go_component nucleus|GO:0005634||IEA  go_process transmitting tissue development|GO:0010500|17855426|IGI  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process carpel formation|GO:0048462|17855426|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product HEC3 (HECATE 3); DNA binding / transcription factor  note HECATE 3 (HEC3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: transmitting tissue development, carpel formation, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: transmitting tissue, stigma, funicle, vascular system, septum; EXPRESSED DURING: gynoecium developmental stages, flower development stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: IND (INDEHISCENT); DNA binding / transcription factor (TAIR:AT4G00120.1); Has 1622 Blast hits to 1622 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 1577; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT5G09750.1p  transcript_id AT5G09750.1  protein_id AT5G09750.1p  transcript_id AT5G09750.1  
At5g09755	chr5:003030817	0.0	C/3030817-3030889	AT5G09755.1  tRNA  gene_syn 67606.TRNA-GLU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Glu (anticodon: CTC)  transcript_id AT5G09755.1  
At5g09760	chr5:003032446	0.0	W/3032446-3033415,3033679-3034364	AT5G09760.1  CDS  gene_syn F17I14.50, F17I14_50  go_component cell wall|GO:0005618||IEA  go_component chloroplast|GO:0009507||IEA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, chloroplast, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase inhibitor (InterPro:IPR006501), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT5G64640.1); Has 1447 Blast hits to 1415 proteins in 271 species: Archae - 0; Bacteria - 416; Metazoa - 1; Fungi - 117; Plants - 911; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G09760.1p  transcript_id AT5G09760.1  protein_id AT5G09760.1p  transcript_id AT5G09760.1  
At5g09770	chr5:003036463	0.0	C/3036463-3036518,3036321-3036375,3036034-3036084,3035717-3035808,3035553-3035630,3035267-3035417	AT5G09770.1  CDS  gene_syn F17I14.40, F17I14_40  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  product ribosomal protein L17 family protein  note ribosomal protein L17 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L17 (InterPro:IPR000456); BEST Arabidopsis thaliana protein match is: ribosomal protein L17 family protein (TAIR:AT5G64650.1); Has 5413 Blast hits to 5398 proteins in 1518 species: Archae - 0; Bacteria - 3032; Metazoa - 81; Fungi - 83; Plants - 73; Viruses - 0; Other Eukaryotes - 2144 (source: NCBI BLink).  protein_id AT5G09770.1p  transcript_id AT5G09770.1  protein_id AT5G09770.1p  transcript_id AT5G09770.1  
At5g09780	chr5:003038386	0.0	C/3038386-3038484,3037666-3037960,3037287-3037585,3036956-3037189	AT5G09780.1  CDS  gene_syn F17I14.30, F17I14_30  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcriptional factor B3 family protein  note transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT2G16210.1); Has 157 Blast hits to 147 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 157; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G09780.1p  transcript_id AT5G09780.1  protein_id AT5G09780.1p  transcript_id AT5G09780.1  
At5g09790	chr5:003040616	0.0	C/3040616-3040970,3039941-3040170,3039745-3039845,3039446-3039658,3039204-3039363	AT5G09790.1  CDS  gene_syn ATXR5, F17I14.20, F17I14_20, SDG15, SETDOMAIN GROUP 15  gene ATXR5  function Encodes a SET-domain protein. Contains a PCNA-binding domain. ATXR5 accumulates preferentially during the late G1 or S phase, suggesting that it plays a role in cell-cycle regulation or progression. A plant line expressing an RNAi construct directed against this gene has reduced agrobacterium-mediated tumor formation.  go_component nucleus|GO:0005634|16771839|IDA  go_component chloroplast|GO:0009507|16771839|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process DNA mediated transformation|GO:0009294|17827277|IMP  go_process pollen development|GO:0009555|16771839|IMP  go_process regulation of cell cycle|GO:0051726|16771839|IEP  go_function DNA binding|GO:0003677||ISS  go_function protein binding|GO:0005515|16771839|IPI  product ATXR5; DNA binding / protein binding  note ATXR5; FUNCTIONS IN: protein binding, DNA binding; INVOLVED IN: regulation of cell cycle, DNA mediated transformation, regulation of transcription, DNA-dependent, pollen development; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: ATXR6; DNA binding / protein binding (TAIR:AT5G24330.1); Has 3375 Blast hits to 3096 proteins in 152 species: Archae - 0; Bacteria - 6; Metazoa - 2462; Fungi - 268; Plants - 479; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).  protein_id AT5G09790.1p  transcript_id AT5G09790.1  protein_id AT5G09790.1p  transcript_id AT5G09790.1  
At5g09790	chr5:003040616	0.0	C/3040616-3040970,3040435-3040515,3039941-3040170,3039745-3039845,3039446-3039658,3039204-3039363	AT5G09790.2  CDS  gene_syn ATXR5, F17I14.20, F17I14_20, SDG15, SETDOMAIN GROUP 15  gene ATXR5  function Encodes a SET-domain protein. Contains a PCNA-binding domain. ATXR5 accumulates preferentially during the late G1 or S phase, suggesting that it plays a role in cell-cycle regulation or progression. A plant line expressing an RNAi construct directed against this gene has reduced agrobacterium-mediated tumor formation.  go_component nucleus|GO:0005634|16771839|IDA  go_component chloroplast|GO:0009507|16771839|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process DNA mediated transformation|GO:0009294|17827277|IMP  go_process pollen development|GO:0009555|16771839|IMP  go_process regulation of cell cycle|GO:0051726|16771839|IEP  go_function DNA binding|GO:0003677||ISS  go_function protein binding|GO:0005515|16771839|IPI  product ATXR5; DNA binding / protein binding  note ATXR5; FUNCTIONS IN: protein binding, DNA binding; INVOLVED IN: regulation of cell cycle, DNA mediated transformation, regulation of transcription, DNA-dependent, pollen development; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: ATXR6; DNA binding / protein binding (TAIR:AT5G24330.1); Has 3326 Blast hits to 3053 proteins in 152 species: Archae - 0; Bacteria - 6; Metazoa - 2426; Fungi - 253; Plants - 481; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).  protein_id AT5G09790.2p  transcript_id AT5G09790.2  protein_id AT5G09790.2p  transcript_id AT5G09790.2  
At5g09795	chr5:003042140	0.0	W/3042140-3042683	AT5G09795.1  pseudogenic_transcript  pseudo  function pseudogene of F-box family protein  
At5g09800	chr5:003043123	0.0	C/3043123-3044352	AT5G09800.1  CDS  gene_syn F17I14.10, F17I14_10  go_component ubiquitin ligase complex|GO:0000151||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  go_process response to chitin|GO:0010200|17722694|IEP  product U-box domain-containing protein  note U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, LP.06 six leaves visible, 4 anthesis; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein (TAIR:AT5G64660.1); Has 1124 Blast hits to 1107 proteins in 67 species: Archae - 0; Bacteria - 16; Metazoa - 72; Fungi - 4; Plants - 941; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).  protein_id AT5G09800.1p  transcript_id AT5G09800.1  protein_id AT5G09800.1p  transcript_id AT5G09800.1  
At5g09805	chr5:003047218	0.0	W/3047218-3047517	AT5G09805.1  CDS  gene_syn IDL3, INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 3  gene IDL3  function Similar to Inflorescence deficient in abscission (IDA). Involved in floral organ abscission.  go_component apoplast|GO:0048046|18660431|TAS  go_process floral organ abscission|GO:0010227|18660431|IMP  product IDL3 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 3)  note INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 3 (IDL3); INVOLVED IN: floral organ abscission; LOCATED IN: apoplast; EXPRESSED IN: leaf abscission zone, vascular tissue, flower abscission zone; BEST Arabidopsis thaliana protein match is: IDL2 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 2) (TAIR:AT5G64667.1); Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G09805.1p  transcript_id AT5G09805.1  protein_id AT5G09805.1p  transcript_id AT5G09805.1  
At5g09810	chr5:003052809	0.0	W/3052809-3052868,3052963-3053356,3053443-3054056,3054155-3054220	AT5G09810.1  CDS  gene_syn ACT2, ACT7, ACTIN 2, ACTIN 7, MYH9.2, MYH9_2  gene ACT7  function Member of Actin gene family.Mutants are defective in germination and root growth.  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component cytoskeleton|GO:0005856|8754679|ISS  go_process cytoskeleton organization|GO:0007010||TAS  go_process response to light stimulus|GO:0009416|8754679|IEP  go_process response to wounding|GO:0009611|8754679|IEP  go_process response to auxin stimulus|GO:0009733|11449050|IEP  go_process seed germination|GO:0009845|12535345|IMP  go_process root epidermal cell differentiation|GO:0010053|19304937|IMP  go_process root development|GO:0048364|12535345|IMP  go_process root development|GO:0048364|19304937|IMP  go_process root hair elongation|GO:0048767|19304937|IMP  go_process cell division|GO:0051301|19304937|IMP  go_function structural constituent of cytoskeleton|GO:0005200|8754679|ISS  product ACT7 (ACTIN 7); structural constituent of cytoskeleton  note ACTIN 7 (ACT7); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: in 9 processes; LOCATED IN: mitochondrion, nucleolus, cell wall, cytoskeleton, plasma membrane; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: ACT3 (actin 3); structural constituent of cytoskeleton (TAIR:AT3G53750.1); Has 11156 Blast hits to 10854 proteins in 2296 species: Archae - 8; Bacteria - 7; Metazoa - 4937; Fungi - 2981; Plants - 1102; Viruses - 2; Other Eukaryotes - 2119 (source: NCBI BLink).  protein_id AT5G09810.1p  transcript_id AT5G09810.1  protein_id AT5G09810.1p  transcript_id AT5G09810.1  
At5g09820	chr5:003057095	0.0	C/3057095-3057380,3056727-3056965,3056551-3056649,3056419-3056463,3056219-3056329	AT5G09820.1  CDS  gene_syn MYH9.3, MYH9_3  go_component chloroplast|GO:0009507|18431481|IDA  go_function structural molecule activity|GO:0005198||IEA  go_process biological_process|GO:0008150||ND  go_function structural molecule activity|GO:0005198||ISS  product plastid-lipid associated protein PAP / fibrillin family protein  note plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PAP fibrillin (InterPro:IPR006843); BEST Arabidopsis thaliana protein match is: plastid-lipid associated protein PAP, putative (TAIR:AT4G22240.1); Has 219 Blast hits to 219 proteins in 61 species: Archae - 0; Bacteria - 56; Metazoa - 0; Fungi - 0; Plants - 163; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G09820.1p  transcript_id AT5G09820.1  protein_id AT5G09820.1p  transcript_id AT5G09820.1  
At5g09820	chr5:003057095	0.0	C/3057095-3057380,3056727-3056965,3056551-3056649,3056419-3056463,3056256-3056329,3056090-3056168	AT5G09820.2  CDS  gene_syn MYH9.3, MYH9_3  go_component chloroplast|GO:0009507|18431481|IDA  go_function structural molecule activity|GO:0005198||IEA  go_process biological_process|GO:0008150||ND  go_function structural molecule activity|GO:0005198||ISS  product plastid-lipid associated protein PAP / fibrillin family protein  note plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PAP fibrillin (InterPro:IPR006843); BEST Arabidopsis thaliana protein match is: plastid-lipid associated protein PAP / fibrillin family protein (TAIR:AT3G26070.1); Has 276 Blast hits to 276 proteins in 64 species: Archae - 0; Bacteria - 81; Metazoa - 0; Fungi - 0; Plants - 193; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G09820.2p  transcript_id AT5G09820.2  protein_id AT5G09820.2p  transcript_id AT5G09820.2  
At5g09830	chr5:003058710	0.0	C/3058710-3058769,3058103-3058125,3057816-3058014	AT5G09830.1  CDS  gene_syn MYH9.4, MYH9_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transcription regulator activity|GO:0030528||ISS  product BolA-like family protein  note BolA-like family protein; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BolA-like protein (InterPro:IPR002634); Has 2175 Blast hits to 2175 proteins in 612 species: Archae - 0; Bacteria - 1011; Metazoa - 238; Fungi - 159; Plants - 65; Viruses - 0; Other Eukaryotes - 702 (source: NCBI BLink).  protein_id AT5G09830.1p  transcript_id AT5G09830.1  protein_id AT5G09830.1p  transcript_id AT5G09830.1  
At5g09840	chr5:003059027	0.0	W/3059027-3060912,3061082-3061970	AT5G09840.1  CDS  gene_syn MYH9.5, MYH9_5  go_component mitochondrion|GO:0005739|14671022|IDA  product unknown protein  note unknown protein; LOCATED IN: mitochondrion; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64710.1); Has 217 Blast hits to 215 proteins in 47 species: Archae - 0; Bacteria - 4; Metazoa - 65; Fungi - 20; Plants - 118; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G09840.1p  transcript_id AT5G09840.1  protein_id AT5G09840.1p  transcript_id AT5G09840.1  
At5g09850	chr5:003064805	0.0	C/3064805-3065221,3064652-3064720,3064481-3064563,3064328-3064401,3064194-3064246,3064085-3064118,3063860-3063999,3063693-3063771,3063488-3063600	AT5G09850.1  CDS  gene_syn MYH9.6, MYH9_6  go_process transcription|GO:0006350||IEA  go_function DNA binding|GO:0003677||IEA  go_function protein binding|GO:0005515||IEA  go_function transcription regulator activity|GO:0030528||IEA  go_component cytosol|GO:0005829|18433157|IDA  product transcription elongation factor-related  note transcription elongation factor-related; FUNCTIONS IN: protein binding, transcription regulator activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), TFIIS N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal (InterPro:IPR014765), Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal (InterPro:IPR010990); BEST Arabidopsis thaliana protein match is: transcription elongation factor-related (TAIR:AT5G05140.1); Has 629 Blast hits to 617 proteins in 113 species: Archae - 0; Bacteria - 22; Metazoa - 350; Fungi - 54; Plants - 107; Viruses - 16; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT5G09850.1p  transcript_id AT5G09850.1  protein_id AT5G09850.1p  transcript_id AT5G09850.1  
At5g09860	chr5:003066815	0.0	W/3066815-3066817,3066917-3067000,3067077-3067151,3067248-3067350,3067511-3067656,3067736-3067807,3067934-3068006,3068097-3068162,3068259-3068305,3068495-3068566,3068694-3068819,3068897-3068962,3069042-3069083,3069216-3069332,3069425-3069507,3069717-3069783,3069911-3069982,3070082-3070132,3070222-3070281,3070359-3070733	AT5G09860.1  CDS  gene_syn MYH9.7, MYH9_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product nuclear matrix protein-related  note nuclear matrix protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 266 Blast hits to 239 proteins in 102 species: Archae - 2; Bacteria - 0; Metazoa - 124; Fungi - 92; Plants - 23; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT5G09860.1p  transcript_id AT5G09860.1  protein_id AT5G09860.1p  transcript_id AT5G09860.1  
At5g09870	chr5:003073356	0.0	W/3073356-3073436,3073820-3074015,3074094-3074269,3074347-3074443,3074534-3074705,3074788-3075400,3075489-3075626,3075727-3075852,3075959-3076171,3076265-3076529,3076607-3076806,3076905-3077255,3077393-3077974	AT5G09870.1  CDS  gene_syn CELLULOSE SYNTHASE 5, CESA5, MYH9.8, MYH9_8  gene CESA5  function Encodes a cellulose synthase isomer, related to CESA6.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|10330464|TAS  go_process plant-type cell wall biogenesis|GO:0009832|9165747|TAS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  product CESA5 (CELLULOSE SYNTHASE 5); cellulose synthase/ transferase, transferring glycosyl groups  note CELLULOSE SYNTHASE 5 (CESA5); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: response to cyclopentenone, plant-type cell wall biogenesis; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: CESA6 (CELLULOSE SYNTHASE 6); cellulose synthase/ transferase, transferring glycosyl groups (TAIR:AT5G64740.1); Has 2166 Blast hits to 1966 proteins in 432 species: Archae - 4; Bacteria - 759; Metazoa - 1; Fungi - 17; Plants - 1318; Viruses - 5; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT5G09870.1p  transcript_id AT5G09870.1  protein_id AT5G09870.1p  transcript_id AT5G09870.1  
At5g09876	chr5:003079987	0.0	W/3079987-3080304	AT5G09876.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT5G09876.1p  transcript_id AT5G09876.1  protein_id AT5G09876.1p  transcript_id AT5G09876.1  
At5g09880	chr5:003084731	0.0	C/3084731-3085179,3084542-3084614,3084381-3084437,3083929-3083984,3083116-3083329,3082915-3083001,3082757-3082834,3082580-3082663,3082430-3082494,3082150-3082330,3081959-3082047,3081756-3081870,3081646-3081681	AT5G09880.1  CDS  gene_syn MYH9.9, MYH9_9  go_component nucleus|GO:0005634||IEA  go_process mRNA processing|GO:0006397||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function nucleic acid binding|GO:0003676||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Splicing factor, CC1-like (InterPro:IPR006509), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT2G16940.1); Has 75114 Blast hits to 36610 proteins in 1254 species: Archae - 65; Bacteria - 4369; Metazoa - 40620; Fungi - 8054; Plants - 5837; Viruses - 419; Other Eukaryotes - 15750 (source: NCBI BLink).  protein_id AT5G09880.1p  transcript_id AT5G09880.1  protein_id AT5G09880.1p  transcript_id AT5G09880.1  
At5g09890	chr5:003088673	0.0	C/3088673-3088842,3088395-3088569,3088179-3088262,3087735-3087976,3087371-3087599,3087088-3087252,3086865-3086996,3086665-3086778,3086410-3086457,3086141-3086222,3085952-3086008,3085810-3085862	AT5G09890.2  CDS  gene_syn MYH9.10, MYH9_10  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase, C-terminal (InterPro:IPR017892), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G14350.3); Has 79473 Blast hits to 78508 proteins in 2155 species: Archae - 59; Bacteria - 7379; Metazoa - 33038; Fungi - 7700; Plants - 15325; Viruses - 373; Other Eukaryotes - 15599 (source: NCBI BLink).  protein_id AT5G09890.2p  transcript_id AT5G09890.2  protein_id AT5G09890.2p  transcript_id AT5G09890.2  
At5g09890	chr5:003088673	0.0	C/3088673-3088842,3088395-3088569,3088179-3088262,3087735-3087976,3087371-3087599,3087088-3087252,3086865-3086996,3086665-3086778,3086410-3086457,3086144-3086222,3085952-3086008,3085810-3085862	AT5G09890.1  CDS  gene_syn MYH9.10, MYH9_10  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase, C-terminal (InterPro:IPR017892), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G14350.3); Has 79400 Blast hits to 78431 proteins in 2154 species: Archae - 59; Bacteria - 7368; Metazoa - 32998; Fungi - 7704; Plants - 15325; Viruses - 373; Other Eukaryotes - 15573 (source: NCBI BLink).  protein_id AT5G09890.1p  transcript_id AT5G09890.1  protein_id AT5G09890.1p  transcript_id AT5G09890.1  
At5g09900	chr5:003092428	0.0	C/3092428-3092434,3092145-3092335,3091463-3091570,3091271-3091375,3091130-3091186,3090840-3091036,3090369-3090468,3090169-3090281,3089911-3090064,3089757-3089834,3089462-3089680	AT5G09900.2  CDS  gene_syn EMB2107, EMBRYO DEFECTIVE 2107, MARIPOSA, MSA, MYH9.11, MYH9_11, REGULATORY PARTICLE NON-ATPASE SUBUNIT 5A, RPN5A  gene EMB2107  function Encodes one of two isoforms for the 26S proteasome regulatory protein (RN) subunit RPN5. For many functions it acts redundantly with the paralogous gene RPN5b but also appears to exert independent effects.  go_component nucleus|GO:0005634|19252082|IDA  go_component cytoplasm|GO:0005737|19252082|IDA  go_component proteasome regulatory particle, lid subcomplex|GO:0008541||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_process multicellular organismal development|GO:0007275|19252082|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product EMB2107 (EMBRYO DEFECTIVE 2107)  note EMBRYO DEFECTIVE 2107 (EMB2107); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: multicellular organismal development, embryonic development ending in seed dormancy, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus, proteasome regulatory particle, lid subcomplex, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Proteasome component region PCI (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) (TAIR:AT5G64760.2); Has 621 Blast hits to 618 proteins in 167 species: Archae - 0; Bacteria - 3; Metazoa - 263; Fungi - 184; Plants - 62; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).  protein_id AT5G09900.2p  transcript_id AT5G09900.2  protein_id AT5G09900.2p  transcript_id AT5G09900.2  
At5g09900	chr5:003092432	0.0	C/3092432-3092434,3092145-3092339,3091463-3091570,3091271-3091375,3091130-3091186,3090840-3091036,3090369-3090468,3090169-3090281,3089907-3090064,3089757-3089834,3089406-3089680	AT5G09900.3  CDS  gene_syn EMB2107, EMBRYO DEFECTIVE 2107, MARIPOSA, MSA, MYH9.11, MYH9_11, REGULATORY PARTICLE NON-ATPASE SUBUNIT 5A, RPN5A  gene EMB2107  function Encodes one of two isoforms for the 26S proteasome regulatory protein (RN) subunit RPN5. For many functions it acts redundantly with the paralogous gene RPN5b but also appears to exert independent effects.  go_component nucleus|GO:0005634|19252082|IDA  go_component cytoplasm|GO:0005737|19252082|IDA  go_component proteasome regulatory particle, lid subcomplex|GO:0008541||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_process multicellular organismal development|GO:0007275|19252082|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product EMB2107 (EMBRYO DEFECTIVE 2107)  note EMBRYO DEFECTIVE 2107 (EMB2107); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: multicellular organismal development, embryonic development ending in seed dormancy, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus, proteasome regulatory particle, lid subcomplex, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) (TAIR:AT5G64760.1); Has 353 Blast hits to 353 proteins in 158 species: Archae - 0; Bacteria - 5; Metazoa - 138; Fungi - 96; Plants - 39; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT5G09900.3p  transcript_id AT5G09900.3  protein_id AT5G09900.3p  transcript_id AT5G09900.3  
At5g09900	chr5:003092432	0.0	C/3092432-3092434,3092145-3092339,3091463-3091570,3091271-3091375,3091130-3091186,3090840-3091036,3090369-3090468,3090169-3090281,3089911-3090064,3089757-3089834,3089462-3089680	AT5G09900.1  CDS  gene_syn EMB2107, EMBRYO DEFECTIVE 2107, MARIPOSA, MSA, MYH9.11, MYH9_11, REGULATORY PARTICLE NON-ATPASE SUBUNIT 5A, RPN5A  gene EMB2107  function Encodes one of two isoforms for the 26S proteasome regulatory protein (RN) subunit RPN5. For many functions it acts redundantly with the paralogous gene RPN5b but also appears to exert independent effects.  go_component nucleus|GO:0005634|19252082|IDA  go_component cytoplasm|GO:0005737|19252082|IDA  go_component proteasome regulatory particle, lid subcomplex|GO:0008541||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_process multicellular organismal development|GO:0007275|19252082|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product EMB2107 (EMBRYO DEFECTIVE 2107)  note EMBRYO DEFECTIVE 2107 (EMB2107); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: multicellular organismal development, embryonic development ending in seed dormancy, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus, proteasome regulatory particle, lid subcomplex, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Proteasome component region PCI (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) (TAIR:AT5G64760.1); Has 623 Blast hits to 620 proteins in 168 species: Archae - 0; Bacteria - 5; Metazoa - 263; Fungi - 184; Plants - 62; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).  protein_id AT5G09900.1p  transcript_id AT5G09900.1  protein_id AT5G09900.1p  transcript_id AT5G09900.1  
At5g09910	chr5:003093272	0.0	W/3093272-3093365,3093616-3093707,3093805-3093946,3094012-3094316,3094399-3094452,3094544-3094671,3094746-3094932	AT5G09910.1  CDS  gene_syn MYH9.12, MYH9_12  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function ATP binding|GO:0005524||IEA  go_function GTP binding|GO:0005525||IEA  go_function transcription factor binding|GO:0008134||IEA  product ATP binding / GTP binding / transcription factor binding  note ATP binding / GTP binding / transcription factor binding; FUNCTIONS IN: GTP binding, transcription factor binding, ATP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction, regulation of transcription, DNA-dependent; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Ras small GTPase, Rab type (InterPro:IPR003579), Miro-like (InterPro:IPR013684), Ras small GTPase, Rho type (InterPro:IPR003578), RNA polymerase sigma factor 54, interaction (InterPro:IPR002078); BEST Arabidopsis thaliana protein match is: LIP1 (Light Insensitive Period1); GTPase (TAIR:AT5G64813.1); Has 10376 Blast hits to 10373 proteins in 333 species: Archae - 2; Bacteria - 22; Metazoa - 5341; Fungi - 1017; Plants - 1172; Viruses - 3; Other Eukaryotes - 2819 (source: NCBI BLink).  protein_id AT5G09910.1p  transcript_id AT5G09910.1  protein_id AT5G09910.1p  transcript_id AT5G09910.1  
At5g09920	chr5:003096276	0.0	W/3096276-3096324,3096503-3096611,3096752-3096829,3096978-3097011,3097107-3097175,3097293-3097370	AT5G09920.1  CDS  gene_syn ATRPB15.9, MYH9.13, MYH9_13, NRPB4, RNA POLYMERASE II 15.9 KDA SUBUNIT, RPB15.9, RPB15.9.9  gene NRPB4  function Non-catalytic subunit specific to DNA-dependent RNA polymerase II; the ortholog of budding yeast RPB4)  go_component DNA-directed RNA polymerase II, core complex|GO:0005665|19110459|IPI  go_component DNA-directed RNA polymerase II, core complex|GO:0005665|9488692|IDA  go_process transcription from RNA polymerase II promoter|GO:0006366|9488692|TAS  go_function DNA-directed RNA polymerase activity|GO:0003899|9488692|IDA  product NRPB4; DNA-directed RNA polymerase  note NRPB4; FUNCTIONS IN: DNA-directed RNA polymerase activity; INVOLVED IN: transcription from RNA polymerase II promoter; LOCATED IN: DNA-directed RNA polymerase II, core complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HRDC-like (InterPro:IPR010997), RNA polymerase II, Rpb4 (InterPro:IPR005574), RNA polymerase II, Rpb4, core (InterPro:IPR006590); Has 306 Blast hits to 306 proteins in 124 species: Archae - 4; Bacteria - 0; Metazoa - 120; Fungi - 96; Plants - 54; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT5G09920.1p  transcript_id AT5G09920.1  protein_id AT5G09920.1p  transcript_id AT5G09920.1  
At5g09930	chr5:003099456	0.0	C/3099456-3100241,3099041-3099382,3098831-3098971,3098570-3098749,3098340-3098495,3098163-3098264,3097945-3098073,3097643-3097843	AT5G09930.1  CDS  gene_syn ATGCN2, MYH9.14, MYH9_14  gene ATGCN2  function member of GCN subfamily  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  product ATGCN2; transporter  note ATGCN2; FUNCTIONS IN: transporter activity; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5); transporter (TAIR:AT5G64840.1); Has 404131 Blast hits to 217535 proteins in 2569 species: Archae - 7671; Bacteria - 279750; Metazoa - 10478; Fungi - 5085; Plants - 2966; Viruses - 55; Other Eukaryotes - 98126 (source: NCBI BLink).  protein_id AT5G09930.1p  transcript_id AT5G09930.1  protein_id AT5G09930.1p  transcript_id AT5G09930.1  
At5g09940	chr5:003101192	0.0	W/3101192-3101833	AT5G09940.1  CDS  gene_syn MYH9.15, MYH9_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1635 (InterPro:IPR012862); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59760.1); Has 37 Blast hits to 37 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G09940.1p  transcript_id AT5G09940.1  protein_id AT5G09940.1p  transcript_id AT5G09940.1  
At5g09950	chr5:003102877	0.0	C/3102877-3105864	AT5G09950.1  CDS  gene_syn MYH9.16, MYH9_16  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16480.1); Has 19781 Blast hits to 4870 proteins in 144 species: Archae - 0; Bacteria - 2; Metazoa - 26; Fungi - 35; Plants - 19451; Viruses - 0; Other Eukaryotes - 267 (source: NCBI BLink).  protein_id AT5G09950.1p  transcript_id AT5G09950.1  protein_id AT5G09950.1p  transcript_id AT5G09950.1  
At5g09960	chr5:003106503	0.0	W/3106503-3106523,3107120-3107389,3107611-3107658	AT5G09960.1  CDS  gene_syn MYH9.17, MYH9_17  go_component plasma membrane|GO:0005886|14506206|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64850.1); Has 37 Blast hits to 37 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G09960.1p  transcript_id AT5G09960.1  protein_id AT5G09960.1p  transcript_id AT5G09960.1  
At5g09970	chr5:003112241	0.0	W/3112241-3113236,3113373-3113987	AT5G09970.1  CDS  gene_syn CYP78A7, MYH9.18, MYH9_18  gene CYP78A7  function member of CYP78A  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP78A7; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP78A7; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; EXPRESSED IN: embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP78A9 (CYTOCHROME P450 78A9); monooxygenase/ oxygen binding (TAIR:AT3G61880.1); Has 23326 Blast hits to 23243 proteins in 1238 species: Archae - 21; Bacteria - 1956; Metazoa - 10221; Fungi - 4629; Plants - 5679; Viruses - 6; Other Eukaryotes - 814 (source: NCBI BLink).  protein_id AT5G09970.1p  transcript_id AT5G09970.1  protein_id AT5G09970.1p  transcript_id AT5G09970.1  
At5g09975	chr5:003118377	0.0	W/3118377-3118457	AT5G09975.1  tRNA  gene_syn 67607.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: AAG)  transcript_id AT5G09975.1  
At5g09976	chr5:003119113	0.0	W/3119113-3119253,3119439-3119540	AT5G09976.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT5G09976.1p  transcript_id AT5G09976.1  protein_id AT5G09976.1p  transcript_id AT5G09976.1  
At5g09978	chr5:003120728	0.0	W/3120728-3120859,3121451-3121576	AT5G09978.1  CDS  gene_syn ELICITOR PEPTIDE 7 PRECURSOR, PEP7  gene PEP7  product PEP7 (ELICITOR PEPTIDE 7 PRECURSOR)  note ELICITOR PEPTIDE 7 PRECURSOR (PEP7); Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G09978.1p  transcript_id AT5G09978.1  protein_id AT5G09978.1p  transcript_id AT5G09978.1  
At5g09980	chr5:003122790	0.0	W/3122790-3122906,3123600-3123728	AT5G09980.1  CDS  gene_syn Elicitor peptide 4 precursor, MYH9.20, MYH9_20, PROPEP4  gene PROPEP4  go_component endomembrane system|GO:0012505||IEA  go_process response to jasmonic acid stimulus|GO:0009753|16785434|IEP  go_function molecular_function|GO:0003674||ND  product PROPEP4 (Elicitor peptide 4 precursor)  note Elicitor peptide 4 precursor (PROPEP4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to jasmonic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G09980.1p  transcript_id AT5G09980.1  protein_id AT5G09980.1p  transcript_id AT5G09980.1  
At5g09990	chr5:003124623	0.0	W/3124623-3124757,3124851-3124976	AT5G09990.1  CDS  gene_syn Elicitor peptide 5 precursor, MYH9.1, PROPEP5  gene PROPEP5  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product PROPEP5 (Elicitor peptide 5 precursor)  note Elicitor peptide 5 precursor (PROPEP5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G09990.1p  transcript_id AT5G09990.1  protein_id AT5G09990.1p  transcript_id AT5G09990.1  
At5g09995	chr5:003125988	0.0	C/3125988-3126302,3125837-3125887,3125609-3125742,3125445-3125533,3125185-3125366	AT5G09995.3  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G08530.1); Has 86 Blast hits to 86 proteins in 35 species: Archae - 0; Bacteria - 48; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G09995.3p  transcript_id AT5G09995.3  protein_id AT5G09995.3p  transcript_id AT5G09995.3  
At5g09995	chr5:003125988	0.0	C/3125988-3126302,3125837-3125887,3125609-3125742,3125445-3125533,3125185-3125369	AT5G09995.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G08530.1); Has 86 Blast hits to 86 proteins in 35 species: Archae - 0; Bacteria - 48; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G09995.2p  transcript_id AT5G09995.2  protein_id AT5G09995.2p  transcript_id AT5G09995.2  
At5g09995	chr5:003125988	0.0	C/3125988-3126302,3125837-3125887,3125609-3125742,3125445-3125533,3125327-3125355	AT5G09995.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G08530.1); Has 86 Blast hits to 86 proteins in 35 species: Archae - 0; Bacteria - 48; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G09995.1p  transcript_id AT5G09995.1  protein_id AT5G09995.1p  transcript_id AT5G09995.1  
At5g10000	chr5:003126709	0.0	W/3126709-3127155	AT5G10000.1  CDS  gene_syn ATFD4, MYH9.22, MYH9_22, ferredoxin 4  gene ATFD4  go_process electron transport chain|GO:0022900||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function iron-sulfur cluster binding|GO:0051536||IEA  go_function 2 iron, 2 sulfur cluster binding|GO:0051537||IEA  go_function electron carrier activity|GO:0009055||ISS  product ATFD4 (ferredoxin 4); 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding  note ferredoxin 4 (ATFD4); FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding; INVOLVED IN: electron transport chain; CONTAINS InterPro DOMAIN/s: 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), Ferredoxin (InterPro:IPR001041), Ferredoxin [2Fe-2S], plant (InterPro:IPR010241), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: ATFD3 (ferredoxin 3); 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding (TAIR:AT2G27510.1); Has 5022 Blast hits to 5020 proteins in 857 species: Archae - 61; Bacteria - 3366; Metazoa - 8; Fungi - 4; Plants - 439; Viruses - 2; Other Eukaryotes - 1142 (source: NCBI BLink).  protein_id AT5G10000.1p  transcript_id AT5G10000.1  protein_id AT5G10000.1p  transcript_id AT5G10000.1  
At5g10010	chr5:003128098	0.0	W/3128098-3128538,3128980-3129018,3129109-3129162,3129253-3129316,3129511-3129569,3129677-3129801,3129949-3130008,3130328-3130386,3130548-3130624,3130739-3130777,3130933-3130995,3131074-3131250,3131405-3131452	AT5G10010.1  CDS  gene_syn T31P16.7, T31P16_7  go_component nucleolus|GO:0005730|15496452|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64910.1); Has 33663 Blast hits to 15368 proteins in 945 species: Archae - 84; Bacteria - 2216; Metazoa - 14020; Fungi - 2983; Plants - 1110; Viruses - 429; Other Eukaryotes - 12821 (source: NCBI BLink).  protein_id AT5G10010.1p  transcript_id AT5G10010.1  protein_id AT5G10010.1p  transcript_id AT5G10010.1  
At5g10020	chr5:003133514	0.0	W/3133514-3134300,3134633-3136270,3136372-3136949	AT5G10020.2  CDS  gene_syn T31P16.10, T31P16_10  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT4G20940.1); Has 91638 Blast hits to 58415 proteins in 1901 species: Archae - 51; Bacteria - 8791; Metazoa - 30700; Fungi - 2853; Plants - 39295; Viruses - 158; Other Eukaryotes - 9790 (source: NCBI BLink).  protein_id AT5G10020.2p  transcript_id AT5G10020.2  protein_id AT5G10020.2p  transcript_id AT5G10020.2  
At5g10020	chr5:003133514	0.0	W/3133514-3134444,3134633-3136270,3136372-3136949	AT5G10020.1  CDS  gene_syn T31P16.10, T31P16_10  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT4G20940.1); Has 94245 Blast hits to 58661 proteins in 1903 species: Archae - 58; Bacteria - 8779; Metazoa - 31991; Fungi - 2861; Plants - 40437; Viruses - 156; Other Eukaryotes - 9963 (source: NCBI BLink).  protein_id AT5G10020.1p  transcript_id AT5G10020.1  protein_id AT5G10020.1p  transcript_id AT5G10020.1  
At5g10030	chr5:003139137	0.0	C/3139137-3139295,3138983-3139063,3138847-3138906,3138691-3138768,3138558-3138621,3138206-3138477,3137892-3138119,3137648-3137800	AT5G10030.1  CDS  gene_syn OBF4, OCS BINDING ELEMENT 4, OCS ELEMENT BINDING FACTOR 4, OCTOPINE SYNTHASE ELEMENT-BINDING PROTEIN, T31P16.20, T31P16_20, TGA4, TGACG MOTIF-BINDING FACTOR 4  gene TGA4  function Encodes a member of basic leucine zipper transcription gene family. Nomenclature according to Xiang, et al. (1997).  go_component nucleus|GO:0005634|14617066|IDA  go_process response to cold|GO:0009409|14617066|IEP  go_process defense response to bacterium|GO:0042742|17369431|IGI  go_function DNA binding|GO:0003677|8252072|TAS  go_function transcription factor activity|GO:0003700|10659709|NAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  product TGA4 (TGACG MOTIF-BINDING FACTOR 4); DNA binding / calmodulin binding / transcription factor  note TGACG MOTIF-BINDING FACTOR 4 (TGA4); FUNCTIONS IN: transcription factor activity, calmodulin binding, DNA binding; INVOLVED IN: defense response to bacterium, response to cold; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: TGA1; DNA binding / calmodulin binding / transcription factor (TAIR:AT5G65210.5); Has 481 Blast hits to 480 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 0; Plants - 423; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT5G10030.1p  transcript_id AT5G10030.1  protein_id AT5G10030.1p  transcript_id AT5G10030.1  
At5g10040	chr5:003143723	0.0	W/3143723-3143986	AT5G10040.1  CDS  gene_syn T31P16.30, T31P16_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, root, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65207.1); Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G10040.1p  transcript_id AT5G10040.1  protein_id AT5G10040.1p  transcript_id AT5G10040.1  
At5g10050	chr5:003144254	0.0	W/3144254-3144593,3144804-3144963,3145304-3145643	AT5G10050.1  CDS  gene_syn T31P16.40, T31P16_40  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT5G65205.1); Has 81170 Blast hits to 81015 proteins in 2374 species: Archae - 457; Bacteria - 44780; Metazoa - 6876; Fungi - 4265; Plants - 1648; Viruses - 2; Other Eukaryotes - 23142 (source: NCBI BLink).  protein_id AT5G10050.1p  transcript_id AT5G10050.1  protein_id AT5G10050.1p  transcript_id AT5G10050.1  
At5g10060	chr5:003147974	0.0	C/3147974-3148049,3147606-3147853,3147237-3147392,3146990-3147149,3146778-3146923,3146663-3146698,3145994-3146581	AT5G10060.1  CDS  gene_syn T31P16.50, T31P16_50  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), Regulation of nuclear pre-mRNA protein (InterPro:IPR006569), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65180.1); Has 4531 Blast hits to 4161 proteins in 412 species: Archae - 14; Bacteria - 404; Metazoa - 1999; Fungi - 666; Plants - 262; Viruses - 36; Other Eukaryotes - 1150 (source: NCBI BLink).  protein_id AT5G10060.1p  transcript_id AT5G10060.1  protein_id AT5G10060.1p  transcript_id AT5G10060.1  
At5g10070	chr5:003150254	0.0	C/3150254-3150324,3150141-3150169,3149983-3150029,3149821-3149886,3149694-3149734,3149466-3149602,3149298-3149388,3149127-3149198,3148901-3149022,3148684-3148808	AT5G10070.2  CDS  gene_syn T31P16.60, T31P16_60  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product RNase L inhibitor protein-related  note RNase L inhibitor protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF367 (InterPro:IPR007177), Possible metal-binding region in RNase L inhibitor, RLI (InterPro:IPR007209); Has 416 Blast hits to 416 proteins in 193 species: Archae - 104; Bacteria - 0; Metazoa - 89; Fungi - 88; Plants - 24; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).  protein_id AT5G10070.2p  transcript_id AT5G10070.2  protein_id AT5G10070.2p  transcript_id AT5G10070.2  
At5g10070	chr5:003150254	0.0	C/3150254-3150324,3150141-3150169,3149983-3150029,3149821-3149886,3149694-3149734,3149466-3149602,3149298-3149388,3149127-3149198,3148907-3149022,3148684-3148808	AT5G10070.1  CDS  gene_syn T31P16.60, T31P16_60  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product RNase L inhibitor protein-related  note RNase L inhibitor protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF367 (InterPro:IPR007177), Possible metal-binding region in RNase L inhibitor, RLI (InterPro:IPR007209); Has 416 Blast hits to 416 proteins in 193 species: Archae - 104; Bacteria - 0; Metazoa - 89; Fungi - 88; Plants - 24; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).  protein_id AT5G10070.1p  transcript_id AT5G10070.1  protein_id AT5G10070.1p  transcript_id AT5G10070.1  
At5g10080	chr5:003150843	0.0	W/3150843-3151135,3151389-3151527,3151663-3151916,3152000-3152230,3152324-3152533,3152650-3152743,3152840-3152903,3152989-3153060,3153151-3153380	AT5G10080.1  CDS  gene_syn T31P16.70, T31P16_70  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: anchored to plasma membrane, anchored to membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT4G35880.1); Has 2348 Blast hits to 2342 proteins in 252 species: Archae - 0; Bacteria - 0; Metazoa - 799; Fungi - 387; Plants - 1028; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).  protein_id AT5G10080.1p  transcript_id AT5G10080.1  protein_id AT5G10080.1p  transcript_id AT5G10080.1  
At5g10090	chr5:003154796	0.0	C/3154796-3155745,3154349-3154717,3153942-3154275,3153722-3153853	AT5G10090.1  CDS  gene_syn T31P16.80, T31P16_80  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product tetratricopeptide repeat (TPR)-containing protein  note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT5G65160.1); Has 11602 Blast hits to 7017 proteins in 597 species: Archae - 392; Bacteria - 2699; Metazoa - 3518; Fungi - 1006; Plants - 930; Viruses - 0; Other Eukaryotes - 3057 (source: NCBI BLink).  protein_id AT5G10090.1p  transcript_id AT5G10090.1  protein_id AT5G10090.1p  transcript_id AT5G10090.1  
At5g10100	chr5:003157980	0.0	W/3157980-3158252,3158338-3158478,3158560-3158631,3158724-3158819,3158940-3158996,3159099-3159200,3159294-3159371,3159495-3159564,3159818-3159888,3159997-3160089,3160219-3160275	AT5G10100.1  CDS  gene_syn T31P16.90, T31P16_90  go_component chloroplast|GO:0009507||IEA  go_process trehalose biosynthetic process|GO:0005992||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_process trehalose biosynthetic process|GO:0005992||ISS  go_function trehalose-phosphatase activity|GO:0004805||ISS  product trehalose-6-phosphate phosphatase, putative  note trehalose-6-phosphate phosphatase, putative; FUNCTIONS IN: catalytic activity, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: embryo, root; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: trehalose-6-phosphate phosphatase, putative (TAIR:AT5G65140.1); Has 1468 Blast hits to 1466 proteins in 515 species: Archae - 29; Bacteria - 765; Metazoa - 195; Fungi - 100; Plants - 258; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).  protein_id AT5G10100.1p  transcript_id AT5G10100.1  protein_id AT5G10100.1p  transcript_id AT5G10100.1  
At5g10110	chr5:003167305	0.0	C/3167305-3167938,3167157-3167210,3166861-3167042,3166660-3166755	AT5G10110.1  CDS  gene_syn T31P16.100, T31P16_100  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65120.1); Has 22 Blast hits to 22 proteins in 7 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G10110.1p  transcript_id AT5G10110.1  protein_id AT5G10110.1p  transcript_id AT5G10110.1  
At5g10120	chr5:003169732	0.0	W/3169732-3171147	AT5G10120.1  CDS  gene_syn T31P16.110, T31P16_110  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ethylene insensitive 3 family protein  note ethylene insensitive 3 family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: stem, hypocotyl, flower, root, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ethylene insensitive 3 (InterPro:IPR006957); BEST Arabidopsis thaliana protein match is: ethylene insensitive 3 family protein (TAIR:AT5G65100.1); Has 248 Blast hits to 233 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 237; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G10120.1p  transcript_id AT5G10120.1  protein_id AT5G10120.1p  transcript_id AT5G10120.1  
At5g10130	chr5:003172272	0.0	C/3172272-3172428,3171551-3171888	AT5G10130.1  CDS  gene_syn T31P16.120, T31P16_120  go_component extracellular space|GO:0005615||IEA  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pollen Ole e 1 allergen and extensin family protein  note pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: extracellular space, endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen and extensin (InterPro:IPR006041), Allergen Ole e 1, conserved site (InterPro:IPR006040); BEST Arabidopsis thaliana protein match is: SAH7 (TAIR:AT4G08685.1); Has 167 Blast hits to 167 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G10130.1p  transcript_id AT5G10130.1  protein_id AT5G10130.1p  transcript_id AT5G10130.1  
At5g10140	chr5:003179155	0.0	C/3179155-3179339,3175604-3175661,3175364-3175425,3175174-3175273,3175054-3175095,3174818-3174859,3173724-3173825	AT5G10140.1  CDS  gene_syn AGAMOUS-LIKE 25, AGL25, FLC, FLF, FLOWERING LOCUS C, FLOWERING LOCUS F, MADS BOX PROTEIN FLOWERING LOCUS F, T31P16.130, T31P16_130  gene FLC  function MADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization, FRI and the autonomous pathway all influence the state of FLC chromatin. Both maternal and paternal alleles are reset by vernalization, but their earliest activation differs in timing and location. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression, whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3  to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex.  go_component protein complex|GO:0043234|16623882|IDA  go_process response to temperature stimulus|GO:0009266|16473970|IMP  go_process negative regulation of flower development|GO:0009910|12114624|IMP  go_process vernalization response|GO:0010048|15734903|IEP  go_process regulation of circadian rhythm|GO:0042752|16473970|IMP  go_function transcription factor activity|GO:0003700|10072403|ISS  go_function transcription factor activity|GO:0003700|10716723|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700|16600915|IDA  go_function specific transcriptional repressor activity|GO:0016566|10716723|IMP  product FLC (FLOWERING LOCUS C); specific transcriptional repressor/ transcription factor  note FLOWERING LOCUS C (FLC); FUNCTIONS IN: transcription factor activity, specific transcriptional repressor activity; INVOLVED IN: regulation of circadian rhythm, negative regulation of flower development, response to temperature stimulus, vernalization response; LOCATED IN: protein complex; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 0 germination, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: MAF1 (MADS AFFECTING FLOWERING 1); transcription factor (TAIR:AT1G77080.4); Has 4915 Blast hits to 4909 proteins in 646 species: Archae - 0; Bacteria - 0; Metazoa - 551; Fungi - 210; Plants - 4100; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT5G10140.1p  transcript_id AT5G10140.1  protein_id AT5G10140.1p  transcript_id AT5G10140.1  
At5g10140	chr5:003179155	0.0	C/3179155-3179339,3175604-3175661,3175364-3175425,3175174-3175273,3175054-3175095,3174818-3174859,3173877-3173891	AT5G10140.2  CDS  gene_syn AGAMOUS-LIKE 25, AGL25, FLC, FLF, FLOWERING LOCUS C, FLOWERING LOCUS F, MADS BOX PROTEIN FLOWERING LOCUS F, T31P16.130, T31P16_130  gene FLC  function MADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization, FRI and the autonomous pathway all influence the state of FLC chromatin. Both maternal and paternal alleles are reset by vernalization, but their earliest activation differs in timing and location. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression, whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3  to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex.  go_component protein complex|GO:0043234|16623882|IDA  go_process response to temperature stimulus|GO:0009266|16473970|IMP  go_process negative regulation of flower development|GO:0009910|12114624|IMP  go_process vernalization response|GO:0010048|15734903|IEP  go_process regulation of circadian rhythm|GO:0042752|16473970|IMP  go_function transcription factor activity|GO:0003700|10072403|ISS  go_function transcription factor activity|GO:0003700|10716723|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700|16600915|IDA  go_function specific transcriptional repressor activity|GO:0016566|10716723|IMP  product FLC (FLOWERING LOCUS C); specific transcriptional repressor/ transcription factor  note FLOWERING LOCUS C (FLC); FUNCTIONS IN: transcription factor activity, specific transcriptional repressor activity; INVOLVED IN: regulation of circadian rhythm, negative regulation of flower development, response to temperature stimulus, vernalization response; LOCATED IN: protein complex; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 0 germination, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: MAF1 (MADS AFFECTING FLOWERING 1); transcription factor (TAIR:AT1G77080.5); Has 4875 Blast hits to 4872 proteins in 641 species: Archae - 0; Bacteria - 0; Metazoa - 551; Fungi - 208; Plants - 4062; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT5G10140.2p  transcript_id AT5G10140.2  protein_id AT5G10140.2p  transcript_id AT5G10140.2  
At5g10140	chr5:003179155	0.0	C/3179155-3179339,3175604-3175661,3175364-3175425,3175174-3175273,3175054-3175095,3174818-3174859,3174036-3174107	AT5G10140.3  CDS  gene_syn AGAMOUS-LIKE 25, AGL25, FLC, FLF, FLOWERING LOCUS C, FLOWERING LOCUS F, MADS BOX PROTEIN FLOWERING LOCUS F, T31P16.130, T31P16_130  gene FLC  function MADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization, FRI and the autonomous pathway all influence the state of FLC chromatin. Both maternal and paternal alleles are reset by vernalization, but their earliest activation differs in timing and location. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression, whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3  to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex.  go_component protein complex|GO:0043234|16623882|IDA  go_process response to temperature stimulus|GO:0009266|16473970|IMP  go_process negative regulation of flower development|GO:0009910|12114624|IMP  go_process vernalization response|GO:0010048|15734903|IEP  go_process regulation of circadian rhythm|GO:0042752|16473970|IMP  go_function transcription factor activity|GO:0003700|10072403|ISS  go_function transcription factor activity|GO:0003700|10716723|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700|16600915|IDA  go_function specific transcriptional repressor activity|GO:0016566|10716723|IMP  product FLC (FLOWERING LOCUS C); specific transcriptional repressor/ transcription factor  note FLOWERING LOCUS C (FLC); FUNCTIONS IN: transcription factor activity, specific transcriptional repressor activity; INVOLVED IN: regulation of circadian rhythm, negative regulation of flower development, response to temperature stimulus, vernalization response; LOCATED IN: protein complex; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 0 germination, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: MAF1 (MADS AFFECTING FLOWERING 1); transcription factor (TAIR:AT1G77080.5).  protein_id AT5G10140.3p  transcript_id AT5G10140.3  protein_id AT5G10140.3p  transcript_id AT5G10140.3  
At5g10150	chr5:003183603	0.0	C/3183603-3183834,3183376-3183445,3183195-3183295,3182370-3183093,3182176-3182293	AT5G10150.1  CDS  gene_syn T31P16.140, T31P16_140  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF966 (InterPro:IPR010369); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59790.1); Has 96 Blast hits to 96 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G10150.1p  transcript_id AT5G10150.1  protein_id AT5G10150.1p  transcript_id AT5G10150.1  
At5g10160	chr5:003185819	0.0	W/3185819-3186017,3186096-3186156,3186246-3186390,3186905-3187159	AT5G10160.1  CDS  gene_syn T31P16.150, T31P16_150  go_component cell wall|GO:0005618|16287169|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process fatty acid biosynthetic process|GO:0006633||IEA  go_function hydro-lyase activity|GO:0016836||IEA  go_process fatty acid biosynthetic process|GO:0006633||ISS  go_function 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity|GO:0019171||ISS  product beta-hydroxyacyl-ACP dehydratase, putative  note beta-hydroxyacyl-ACP dehydratase, putative; FUNCTIONS IN: hydro-lyase activity, 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: cell wall, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ (InterPro:IPR013114), Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ (InterPro:IPR010084); BEST Arabidopsis thaliana protein match is: beta-hydroxyacyl-ACP dehydratase, putative (TAIR:AT2G22230.1); Has 4912 Blast hits to 4909 proteins in 1231 species: Archae - 0; Bacteria - 2978; Metazoa - 1; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 1890 (source: NCBI BLink).  protein_id AT5G10160.1p  transcript_id AT5G10160.1  protein_id AT5G10160.1p  transcript_id AT5G10160.1  
At5g10170	chr5:003189974	0.0	C/3189974-3190161,3189764-3189832,3189451-3189586,3189032-3189279,3188627-3188853,3188430-3188545,3188163-3188339,3187892-3188080,3187741-3187803,3187538-3187657	AT5G10170.1  CDS  gene_syn ATMIPS3, MIPS3, MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3, T31P16.160, T31P16_160  gene MIPS3  function myo-inositol-1-phosphate synthase isoform 3.Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.  go_process inositol biosynthetic process|GO:0006021||IEA  go_process metabolic process|GO:0008152||IEA  go_process phospholipid biosynthetic process|GO:0008654||IEA  go_function catalytic activity|GO:0003824||IEA  go_function inositol-3-phosphate synthase activity|GO:0004512||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process inositol biosynthetic process|GO:0006021||ISS  go_process phospholipid biosynthetic process|GO:0008654||ISS  go_function inositol-3-phosphate synthase activity|GO:0004512||ISS  product MIPS3 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3); binding / catalytic/ inositol-3-phosphate synthase  note MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3 (MIPS3); FUNCTIONS IN: binding, inositol-3-phosphate synthase activity, catalytic activity; INVOLVED IN: metabolic process, inositol biosynthetic process, phospholipid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Myo-inositol-1-phosphate synthase (InterPro:IPR002587), Myo-inositol-1-phosphate synthase, GAPDH-like (InterPro:IPR013021), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2); binding / catalytic/ inositol-3-phosphate synthase (TAIR:AT2G22240.1); Has 800 Blast hits to 796 proteins in 268 species: Archae - 49; Bacteria - 167; Metazoa - 114; Fungi - 111; Plants - 127; Viruses - 0; Other Eukaryotes - 232 (source: NCBI BLink).  protein_id AT5G10170.1p  transcript_id AT5G10170.1  protein_id AT5G10170.1p  transcript_id AT5G10170.1  
At5g10180	chr5:003193225	0.0	W/3193225-3193620,3193705-3193753,3193846-3194294,3194635-3194865,3194946-3195072,3195375-3195661,3195792-3195985,3196088-3196179,3196463-3196539,3196687-3196818	AT5G10180.1  CDS  gene_syn AST68, SLUFATE TRANSPORTER 2;1, SULTR2;1  gene AST68  function Encodes a low-affinity sulfate transporter expressed in the root cap and central cylinder, where it is induced by sulfur starvation. Expression in the shoot vascular system is not induced by sulfur starvation.  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process sulfate transport|GO:0008272|9380766|IGI  go_function sulfate transmembrane transporter activity|GO:0015116|9380766|IGI  go_function sulfate transmembrane transporter activity|GO:0015116||ISS  product AST68; sulfate transmembrane transporter  note AST68; FUNCTIONS IN: sulfate transmembrane transporter activity; INVOLVED IN: sulfate transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Sulphate transporter (InterPro:IPR011547), Sulphate transporter/antisigma-factor antagonist STAS (InterPro:IPR002645), Sulphate anion transporter, conserved site (InterPro:IPR018045), Sulphate anion transporter (InterPro:IPR001902); BEST Arabidopsis thaliana protein match is: AST56; sulfate transmembrane transporter (TAIR:AT1G77990.1); Has 6548 Blast hits to 6512 proteins in 1084 species: Archae - 34; Bacteria - 3342; Metazoa - 976; Fungi - 278; Plants - 321; Viruses - 0; Other Eukaryotes - 1597 (source: NCBI BLink).  protein_id AT5G10180.1p  transcript_id AT5G10180.1  protein_id AT5G10180.1p  transcript_id AT5G10180.1  
At5g10190	chr5:003199205	0.0	W/3199205-3199492,3199870-3200615,3200708-3201140	AT5G10190.1  CDS  gene_syn F18D22.5  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product transporter-related  note transporter-related; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: UNE2 (unfertilized embryo sac 2); carbohydrate transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT1G78130.1); Has 8728 Blast hits to 8693 proteins in 1166 species: Archae - 209; Bacteria - 6596; Metazoa - 315; Fungi - 290; Plants - 194; Viruses - 2; Other Eukaryotes - 1122 (source: NCBI BLink).  protein_id AT5G10190.1p  transcript_id AT5G10190.1  protein_id AT5G10190.1p  transcript_id AT5G10190.1  
At5g10200	chr5:003202378	0.0	W/3202378-3204226,3204321-3204367	AT5G10200.1  CDS  gene_syn F18D22.1  go_component plasma membrane|GO:0005886|17317660|IDA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT5G43120.1); Has 1566 Blast hits to 1469 proteins in 175 species: Archae - 0; Bacteria - 3; Metazoa - 907; Fungi - 260; Plants - 202; Viruses - 4; Other Eukaryotes - 190 (source: NCBI BLink).  protein_id AT5G10200.1p  transcript_id AT5G10200.1  protein_id AT5G10200.1p  transcript_id AT5G10200.1  
At5g10210	chr5:003206236	0.0	W/3206236-3206829	AT5G10210.1  CDS  gene_syn F18D22.2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65030.1); Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G10210.1p  transcript_id AT5G10210.1  protein_id AT5G10210.1p  transcript_id AT5G10210.1  
At5g10220	chr5:003208709	0.0	C/3208709-3208784,3207881-3208026,3207587-3207805,3206980-3207495	AT5G10220.1  CDS  gene_syn ANN6, ANNAT6, ANNEXIN ARABIDOPSIS 6, ANNEXIN ARABIDOPSIS THALIANA 6, F18D22.3  gene ANN6  function Encodes a calcium-binding protein annexin (AnnAt6).  go_function calcium ion binding|GO:0005509||IEA  go_function calcium-dependent phospholipid binding|GO:0005544||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  go_function calcium-dependent phospholipid binding|GO:0005544||ISS  product ANN6 (ANNEXIN ARABIDOPSIS 6); calcium ion binding / calcium-dependent phospholipid binding  note ANNEXIN ARABIDOPSIS 6 (ANN6); FUNCTIONS IN: calcium-dependent phospholipid binding, calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Annexin like protein (InterPro:IPR015472), Annexin repeat (InterPro:IPR018502), Annexin repeat, conserved site (InterPro:IPR018252), Annexin (InterPro:IPR001464), Annexin, type plant (InterPro:IPR009118); BEST Arabidopsis thaliana protein match is: ANNAT7 (ANNEXIN ARABIDOPSIS 7); calcium ion binding / calcium-dependent phospholipid binding (TAIR:AT5G10230.1); Has 3018 Blast hits to 1801 proteins in 154 species: Archae - 0; Bacteria - 0; Metazoa - 2413; Fungi - 114; Plants - 308; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink).  protein_id AT5G10220.1p  transcript_id AT5G10220.1  protein_id AT5G10220.1p  transcript_id AT5G10220.1  
At5g10230	chr5:003211321	0.0	C/3211321-3211396,3210776-3210921,3210460-3210678,3209738-3210247	AT5G10230.1  CDS  gene_syn ANN7, ANNAT7, ANNEXIN 7, ANNEXIN ARABIDOPSIS 7, F18D22.4  gene ANNAT7  function Encodes a calcium-binding protein annexin (AnnAt7).  go_function calcium ion binding|GO:0005509||IEA  go_function calcium-dependent phospholipid binding|GO:0005544||IEA  go_function calcium ion binding|GO:0005509||ISS  go_function calcium-dependent phospholipid binding|GO:0005544||ISS  product ANNAT7 (ANNEXIN ARABIDOPSIS 7); calcium ion binding / calcium-dependent phospholipid binding  note ANNEXIN ARABIDOPSIS 7 (ANNAT7); FUNCTIONS IN: calcium-dependent phospholipid binding, calcium ion binding; EXPRESSED IN: flower, root, leaf; CONTAINS InterPro DOMAIN/s: Annexin like protein (InterPro:IPR015472), Annexin repeat (InterPro:IPR018502), Annexin repeat, conserved site (InterPro:IPR018252), Annexin (InterPro:IPR001464), Annexin, type plant (InterPro:IPR009118); BEST Arabidopsis thaliana protein match is: ANN6 (ANNEXIN ARABIDOPSIS 6); calcium ion binding / calcium-dependent phospholipid binding (TAIR:AT5G10220.1); Has 3285 Blast hits to 1799 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 2636; Fungi - 149; Plants - 309; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink).  protein_id AT5G10230.1p  transcript_id AT5G10230.1  protein_id AT5G10230.1p  transcript_id AT5G10230.1  
At5g10235	chr5:003212351	0.0	C/3212351-3212423	AT5G10235.1  tRNA  gene_syn 67608.TRNA-ARG-1, 67609.TRNA-ARG-1  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: ACG)  transcript_id AT5G10235.1  
At5g10240	chr5:003216339	0.0	C/3216339-3216418,3215940-3216078,3215654-3215753,3215327-3215461,3215129-3215224,3214850-3214944,3214594-3214755,3214428-3214508,3214122-3214343,3213904-3214038,3213614-3213694,3213442-3213528,3213243-3213350,3212934-3213146	AT5G10240.2  CDS  gene_syn ASN3, ASPARAGINE SYNTHETASE 3, F18D22.10, F18D22_10  gene ASN3  function Encodes asparagine synthetase (ASN3).  go_process asparagine biosynthetic process|GO:0006529||IEA  go_process metabolic process|GO:0008152||IEA  go_function asparagine synthase (glutamine-hydrolyzing) activity|GO:0004066||IEA  go_process asparagine biosynthetic process|GO:0006529||ISS  go_function asparagine synthase (glutamine-hydrolyzing) activity|GO:0004066||ISS  product ASN3 (ASPARAGINE SYNTHETASE 3); asparagine synthase (glutamine-hydrolyzing)  note ASPARAGINE SYNTHETASE 3 (ASN3); FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity; INVOLVED IN: asparagine biosynthetic process, metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase, class-II (InterPro:IPR000583), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Asparagine synthase (InterPro:IPR001962), Asparagine synthase, glutamine-hydrolyzing (InterPro:IPR006426), Glutamine amidotransferase, type II (InterPro:IPR017932); BEST Arabidopsis thaliana protein match is: ASN2 (ASPARAGINE SYNTHETASE 2); asparagine synthase (glutamine-hydrolyzing) (TAIR:AT5G65010.1); Has 8768 Blast hits to 8573 proteins in 1315 species: Archae - 228; Bacteria - 4466; Metazoa - 197; Fungi - 176; Plants - 279; Viruses - 7; Other Eukaryotes - 3415 (source: NCBI BLink).  protein_id AT5G10240.2p  transcript_id AT5G10240.2  protein_id AT5G10240.2p  transcript_id AT5G10240.2  
At5g10240	chr5:003216339	0.0	C/3216339-3216418,3215940-3216078,3215658-3215753,3215327-3215468,3215129-3215224,3214850-3214944,3214594-3214755,3214428-3214508,3214122-3214343,3213904-3214038,3213614-3213694,3213442-3213528,3213243-3213350,3212934-3213146	AT5G10240.1  CDS  gene_syn ASN3, ASPARAGINE SYNTHETASE 3, F18D22.10, F18D22_10  gene ASN3  function Encodes asparagine synthetase (ASN3).  go_process asparagine biosynthetic process|GO:0006529||IEA  go_process metabolic process|GO:0008152||IEA  go_function asparagine synthase (glutamine-hydrolyzing) activity|GO:0004066||IEA  go_process asparagine biosynthetic process|GO:0006529||ISS  go_function asparagine synthase (glutamine-hydrolyzing) activity|GO:0004066||ISS  product ASN3 (ASPARAGINE SYNTHETASE 3); asparagine synthase (glutamine-hydrolyzing)  note ASPARAGINE SYNTHETASE 3 (ASN3); FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity; INVOLVED IN: asparagine biosynthetic process, metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamine amidotransferase, class-II (InterPro:IPR000583), Asparagine synthase (InterPro:IPR001962), Asparagine synthase, glutamine-hydrolyzing (InterPro:IPR006426), Glutamine amidotransferase, type II (InterPro:IPR017932); BEST Arabidopsis thaliana protein match is: ASN2 (ASPARAGINE SYNTHETASE 2); asparagine synthase (glutamine-hydrolyzing) (TAIR:AT5G65010.1); Has 8691 Blast hits to 8496 proteins in 1303 species: Archae - 249; Bacteria - 4313; Metazoa - 197; Fungi - 178; Plants - 282; Viruses - 7; Other Eukaryotes - 3465 (source: NCBI BLink).  protein_id AT5G10240.1p  transcript_id AT5G10240.1  protein_id AT5G10240.1p  transcript_id AT5G10240.1  
At5g10250	chr5:003219238	0.0	C/3219238-3219368,3219082-3219151,3218043-3218944,3217713-3217917,3217517-3217645,3217028-3217414	AT5G10250.1  CDS  gene_syn DEFECTIVELY ORGANIZED TRIBUTARIES 3, DOT3, F18D22.20, F18D22_20  gene DOT3  function Encodes a protein with an N-terminal BTB/POZ domain and a C-terminal NPH3 family domain. dot3 mutants have defects in shoot and primary root growth and produce an aberrant parallel venation pattern in juvenile leaves.  go_function signal transducer activity|GO:0004871||IEA  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process response to light stimulus|GO:0009416||ISS  go_process phloem or xylem histogenesis|GO:0010087|18643975|IMP  go_process leaf vascular tissue pattern formation|GO:0010305|18643975|IMP  go_process cotyledon vascular tissue pattern formation|GO:0010588|18643975|IMP  go_process shoot development|GO:0048367|18643975|IMP  go_process primary root development|GO:0080022|18643975|IMP  go_function signal transducer activity|GO:0004871||ISS  product DOT3 (DEFECTIVELY ORGANIZED TRIBUTARIES 3); protein binding / signal transducer  note DEFECTIVELY ORGANIZED TRIBUTARIES 3 (DOT3); FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: in 6 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf primordium; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: NPH3 (NON-PHOTOTROPIC HYPOCOTYL 3); protein binding / signal transducer (TAIR:AT5G64330.1); Has 721 Blast hits to 688 proteins in 66 species: Archae - 0; Bacteria - 10; Metazoa - 148; Fungi - 4; Plants - 436; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).  protein_id AT5G10250.1p  transcript_id AT5G10250.1  protein_id AT5G10250.1p  transcript_id AT5G10250.1  
At5g10260	chr5:003219991	0.0	W/3219991-3220107,3220281-3220351,3220553-3220641,3220780-3220891,3220969-3221059,3221158-3221301	AT5G10260.1  CDS  gene_syn Arabidopsis Rab GTPase homolog H1e, AtRABH1e, F18D22.30, F18D22_30  gene AtRABH1e  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product AtRABH1e (Arabidopsis Rab GTPase homolog H1e); GTP binding  note Arabidopsis Rab GTPase homolog H1e (AtRABH1e); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab6-related (InterPro:IPR015600); BEST Arabidopsis thaliana protein match is: ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D); GTP binding (TAIR:AT2G22290.1); Has 21717 Blast hits to 21689 proteins in 604 species: Archae - 17; Bacteria - 112; Metazoa - 12246; Fungi - 2563; Plants - 1861; Viruses - 19; Other Eukaryotes - 4899 (source: NCBI BLink).  protein_id AT5G10260.1p  transcript_id AT5G10260.1  protein_id AT5G10260.1p  transcript_id AT5G10260.1  
At5g10270	chr5:003224562	0.0	C/3224562-3224674,3224301-3224382,3224083-3224173,3223952-3223981,3223750-3223859,3223588-3223660,3223394-3223514,3223160-3223277,3222714-3222853,3222575-3222632,3222352-3222422,3221715-3222225	AT5G10270.1  CDS  gene_syn CDKC;1, Cyclin-dependent kinase C;1, F18D22.40, F18D22_40  gene CDKC;1  function Encodes CDKC;1, part of a CDKC kinase complex that is targeted by Cauliflower mosaic virus (CaMV) for transcriptional activation of viral genes. Also regulates plant growth and development.  go_component cytosol|GO:0005829|18433157|IDA  go_process response to virus|GO:0009615|17468259|IEP  go_process leaf development|GO:0048366|17468259|IGI  go_function kinase activity|GO:0016301|17468259|IDA  go_function kinase activity|GO:0016301||ISS  product CDKC;1 (Cyclin-dependent kinase C;1); kinase  note Cyclin-dependent kinase C;1 (CDKC;1); FUNCTIONS IN: kinase activity; INVOLVED IN: response to virus, leaf development; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CDKC2 (Cyclin dependent kinase group C 2); kinase (TAIR:AT5G64960.1); Has 94858 Blast hits to 91117 proteins in 2965 species: Archae - 39; Bacteria - 7562; Metazoa - 43627; Fungi - 9053; Plants - 17095; Viruses - 434; Other Eukaryotes - 17048 (source: NCBI BLink).  protein_id AT5G10270.1p  transcript_id AT5G10270.1  protein_id AT5G10270.1p  transcript_id AT5G10270.1  
At5g10278	chr5:003228241	0.0	W/3228241-3232505	AT5G10278.2  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G10278.2  
At5g10278	chr5:003228286	0.0	W/3228286-3232723	AT5G10278.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G10278.1  
At5g10280	chr5:003232776	0.0	W/3232776-3232908,3232984-3233113,3233215-3233956	AT5G10280.1  CDS  gene_syn ATMYB64, ATMYB92, F18D22.50, F18D22_50, MYB DOMAIN PROTEIN 92, MYB92, myb domain protein 92  gene ATMYB92  function Encodes a putative transcription factor (MYB92).  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ATMYB92 (MYB DOMAIN PROTEIN 92); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 92 (ATMYB92); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to jasmonic acid stimulus, regulation of transcription, DNA-dependent, response to salicylic acid stimulus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: AtMYB53 (myb domain protein 53); DNA binding / transcription factor (TAIR:AT5G65230.1); Has 6474 Blast hits to 5895 proteins in 364 species: Archae - 0; Bacteria - 0; Metazoa - 704; Fungi - 329; Plants - 3807; Viruses - 6; Other Eukaryotes - 1628 (source: NCBI BLink).  protein_id AT5G10280.1p  transcript_id AT5G10280.1  protein_id AT5G10280.1p  transcript_id AT5G10280.1  
At5g10290	chr5:003238081	0.0	C/3238081-3238171,3237822-3237954,3237670-3237741,3237432-3237575,3237248-3237319,3237096-3237161,3236946-3237016,3236706-3236846,3235867-3236603,3235462-3235776	AT5G10290.1  CDS  gene_syn F18D22.60, F18D22_60  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat family protein / protein kinase family protein  note leucine-rich repeat family protein / protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591); BEST Arabidopsis thaliana protein match is: kinase (TAIR:AT5G65240.1); Has 122421 Blast hits to 85605 proteins in 2936 species: Archae - 56; Bacteria - 9576; Metazoa - 41410; Fungi - 5522; Plants - 50342; Viruses - 397; Other Eukaryotes - 15118 (source: NCBI BLink).  protein_id AT5G10290.1p  transcript_id AT5G10290.1  protein_id AT5G10290.1p  transcript_id AT5G10290.1  
At5g10300	chr5:003239684	0.0	W/3239684-3240046,3240160-3240291,3240443-3240724	AT5G10300.1  CDS  gene_syn ARABIDOPSIS THALIANA METHYL ESTERASE 5, ATMES5, F18D22.70, F18D22_70, MES5, METHYL ESTERASE 5  gene MES5  function Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.  go_process response to wounding|GO:0009611|17675405|IEP  go_function hydrolase activity|GO:0016787||ISS  product MES5 (METHYL ESTERASE 5); hydrolase  note METHYL ESTERASE 5 (MES5); FUNCTIONS IN: hydrolase activity; INVOLVED IN: response to wounding; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: MES1 (METHYL ESTERASE 1); hydrolase, acting on ester bonds / methyl indole-3-acetate esterase/ methyl jasmonate esterase/ methyl salicylate esterase (TAIR:AT2G23620.1); Has 922 Blast hits to 922 proteins in 207 species: Archae - 0; Bacteria - 457; Metazoa - 0; Fungi - 10; Plants - 332; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).  protein_id AT5G10300.1p  transcript_id AT5G10300.1  protein_id AT5G10300.1p  transcript_id AT5G10300.1  
At5g10310	chr5:003242014	0.0	C/3242014-3242127,3241666-3241920	AT5G10310.1  CDS  gene_syn F18D22.80, F18D22_80  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37810.1); Has 69 Blast hits to 69 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G10310.1p  transcript_id AT5G10310.1  protein_id AT5G10310.1p  transcript_id AT5G10310.1  
At5g10320	chr5:003246472	0.0	C/3246472-3246603,3246322-3246387,3246156-3246237,3245896-3246029,3245678-3245779,3245491-3245547,3245309-3245412,3245131-3245212,3244961-3245053,3244773-3244837,3244605-3244686	AT5G10320.3  CDS  gene_syn F18D22.90, F18D22_90  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G10320.3p  transcript_id AT5G10320.3  protein_id AT5G10320.3p  transcript_id AT5G10320.3  
At5g10320	chr5:003246472	0.0	C/3246472-3246603,3246322-3246387,3246156-3246237,3245896-3246029,3245678-3245779,3245491-3245547,3245309-3245412,3245131-3245212,3244961-3245053,3244773-3244837,3244674-3244686,3244524-3244604,3244340-3244448,3244180-3244268	AT5G10320.2  CDS  gene_syn F18D22.90, F18D22_90  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 28 Blast hits to 28 proteins in 10 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G10320.2p  transcript_id AT5G10320.2  protein_id AT5G10320.2p  transcript_id AT5G10320.2  
At5g10320	chr5:003246472	0.0	C/3246472-3246603,3246322-3246387,3246156-3246237,3245896-3246032,3245678-3245779,3245491-3245547,3245309-3245412,3245131-3245212,3244961-3245053,3244773-3244837,3244674-3244686,3244524-3244604,3244340-3244448,3244180-3244268	AT5G10320.1  CDS  gene_syn F18D22.90, F18D22_90  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 28 Blast hits to 28 proteins in 10 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G10320.1p  transcript_id AT5G10320.1  protein_id AT5G10320.1p  transcript_id AT5G10320.1  
At5g10330	chr5:003249625	0.0	C/3249625-3249693,3249437-3249520,3249166-3249320,3248986-3249083,3248772-3248880,3248524-3248681,3248027-3248442	AT5G10330.3  CDS  gene_syn ATHPA1, EMB2196, EMBRYO DEFECTIVE 2196, F18D22.100, HISN6A, HISTIDINE BIOSYNTHESIS 6A, HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1, HPA1  gene HPA1  function Encodes histidinol-phosphate aminotransferase that catalyzes the eighth step in histidine biosynthesis. Loss of function mutations are embryo lethal.  go_process histidine biosynthetic process|GO:0000105|16815950|TAS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function histidinol-phosphate transaminase activity|GO:0004400|16815950|IGI  go_function histidinol-phosphate transaminase activity|GO:0004400||ISS  product HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1); histidinol-phosphate transaminase  note HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1 (HPA1); FUNCTIONS IN: histidinol-phosphate transaminase activity; INVOLVED IN: embryonic development ending in seed dormancy, histidine biosynthetic process; EXPRESSED IN: stem, fruit, flower, root; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Histidinol-phosphate aminotransferase (InterPro:IPR005861), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: histidinol-phosphate aminotransferase, putative (TAIR:AT1G71920.3); Has 21917 Blast hits to 21917 proteins in 1647 species: Archae - 645; Bacteria - 13351; Metazoa - 220; Fungi - 247; Plants - 291; Viruses - 0; Other Eukaryotes - 7163 (source: NCBI BLink).  protein_id AT5G10330.3p  transcript_id AT5G10330.3  protein_id AT5G10330.3p  transcript_id AT5G10330.3  
At5g10330	chr5:003249625	0.0	C/3249625-3249858,3249437-3249520,3249166-3249320,3248986-3249083,3248772-3248880,3248524-3248681,3248027-3248442	AT5G10330.1  CDS  gene_syn ATHPA1, EMB2196, EMBRYO DEFECTIVE 2196, F18D22.100, HISN6A, HISTIDINE BIOSYNTHESIS 6A, HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1, HPA1  gene HPA1  function Encodes histidinol-phosphate aminotransferase that catalyzes the eighth step in histidine biosynthesis. Loss of function mutations are embryo lethal.  go_component chloroplast|GO:0009507||IEA  go_process histidine biosynthetic process|GO:0000105|16815950|TAS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function histidinol-phosphate transaminase activity|GO:0004400|16815950|IGI  go_function histidinol-phosphate transaminase activity|GO:0004400||ISS  product HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1); histidinol-phosphate transaminase  note HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1 (HPA1); FUNCTIONS IN: histidinol-phosphate transaminase activity; INVOLVED IN: embryonic development ending in seed dormancy, histidine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: stem, fruit, flower, root; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Histidinol-phosphate aminotransferase (InterPro:IPR005861), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: histidinol-phosphate aminotransferase, putative (TAIR:AT1G71920.2); Has 21920 Blast hits to 21920 proteins in 1647 species: Archae - 645; Bacteria - 13353; Metazoa - 220; Fungi - 247; Plants - 291; Viruses - 0; Other Eukaryotes - 7164 (source: NCBI BLink).  protein_id AT5G10330.1p  transcript_id AT5G10330.1  protein_id AT5G10330.1p  transcript_id AT5G10330.1  
At5g10330	chr5:003249625	0.0	C/3249625-3249858,3249437-3249520,3249166-3249320,3248986-3249083,3248772-3248880,3248524-3248681,3248027-3248442	AT5G10330.2  CDS  gene_syn ATHPA1, EMB2196, EMBRYO DEFECTIVE 2196, F18D22.100, HISN6A, HISTIDINE BIOSYNTHESIS 6A, HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1, HPA1  gene HPA1  function Encodes histidinol-phosphate aminotransferase that catalyzes the eighth step in histidine biosynthesis. Loss of function mutations are embryo lethal.  go_component chloroplast|GO:0009507||IEA  go_process histidine biosynthetic process|GO:0000105|16815950|TAS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function histidinol-phosphate transaminase activity|GO:0004400|16815950|IGI  go_function histidinol-phosphate transaminase activity|GO:0004400||ISS  product HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1); histidinol-phosphate transaminase  note HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1 (HPA1); FUNCTIONS IN: histidinol-phosphate transaminase activity; INVOLVED IN: embryonic development ending in seed dormancy, histidine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: stem, fruit, flower, root; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Histidinol-phosphate aminotransferase (InterPro:IPR005861), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: histidinol-phosphate aminotransferase, putative (TAIR:AT1G71920.2); Has 21920 Blast hits to 21920 proteins in 1647 species: Archae - 645; Bacteria - 13353; Metazoa - 220; Fungi - 247; Plants - 291; Viruses - 0; Other Eukaryotes - 7164 (source: NCBI BLink).  protein_id AT5G10330.2p  transcript_id AT5G10330.2  protein_id AT5G10330.2p  transcript_id AT5G10330.2  
At5g10336	chr5:003251943	0.0	C/3251943-3252065	AT5G10336.1  CDS  product unknown protein  note unknown protein; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G10336.1p  transcript_id AT5G10336.1  protein_id AT5G10336.1p  transcript_id AT5G10336.1  
At5g10340	chr5:003253122	0.0	W/3253122-3253260,3253847-3255045	AT5G10340.1  CDS  gene_syn F12B17.310, F12B17_310  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box protein-related / SLF-related  note F-box protein-related / SLF-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: S locus F-box-related / SLF-related (TAIR:AT2G34280.1); Has 603 Blast hits to 591 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 601; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G10340.1p  transcript_id AT5G10340.1  protein_id AT5G10340.1p  transcript_id AT5G10340.1  
At5g10350	chr5:003257636	0.0	C/3257636-3257746,3257443-3257545,3257230-3257300,3256022-3256213,3255808-3255939	AT5G10350.2  CDS  gene_syn F12B17.300, F12B17_300  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  go_function protein binding|GO:0005515|16282318|IPI  go_function poly(A) binding|GO:0008143|16282318|IDA  product polyadenylate-binding protein family protein / PABP family protein  note polyadenylate-binding protein family protein / PABP family protein; FUNCTIONS IN: protein binding, RNA binding, poly(A) binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: polyadenylate-binding protein family protein / PABP family protein (TAIR:AT5G65260.1); Has 5084 Blast hits to 4643 proteins in 411 species: Archae - 4; Bacteria - 591; Metazoa - 2122; Fungi - 891; Plants - 861; Viruses - 0; Other Eukaryotes - 615 (source: NCBI BLink).  protein_id AT5G10350.2p  transcript_id AT5G10350.2  protein_id AT5G10350.2p  transcript_id AT5G10350.2  
At5g10350	chr5:003257636	0.0	C/3257636-3257746,3257443-3257545,3257230-3257300,3256022-3256213,3255812-3255939,3255674-3255722	AT5G10350.1  CDS  gene_syn F12B17.300, F12B17_300  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  go_function protein binding|GO:0005515|16282318|IPI  go_function poly(A) binding|GO:0008143|16282318|IDA  product polyadenylate-binding protein family protein / PABP family protein  note polyadenylate-binding protein family protein / PABP family protein; FUNCTIONS IN: protein binding, RNA binding, poly(A) binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: polyadenylate-binding protein family protein / PABP family protein (TAIR:AT5G65260.1); Has 5173 Blast hits to 4727 proteins in 414 species: Archae - 4; Bacteria - 591; Metazoa - 2173; Fungi - 904; Plants - 878; Viruses - 0; Other Eukaryotes - 623 (source: NCBI BLink).  protein_id AT5G10350.1p  transcript_id AT5G10350.1  protein_id AT5G10350.1p  transcript_id AT5G10350.1  
At5g10360	chr5:003260137	0.0	C/3260137-3260142,3259982-3260046,3259632-3259689,3259430-3259538,3259060-3259332,3258734-3258972	AT5G10360.1  CDS  gene_syn EMB3010, F12B17.290, F12B17_290, embryo defective 3010  gene EMB3010  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product EMB3010 (embryo defective 3010); structural constituent of ribosome  note embryo defective 3010 (EMB3010); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: embryonic development ending in seed dormancy, translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S6e (InterPro:IPR001377), Ribosomal protein S6, eukaryotic (InterPro:IPR014401), Ribosomal protein S6e, conserved site (InterPro:IPR018282); BEST Arabidopsis thaliana protein match is: RPS6 (RIBOSOMAL PROTEIN S6); structural constituent of ribosome (TAIR:AT4G31700.1); Has 832 Blast hits to 830 proteins in 304 species: Archae - 152; Bacteria - 0; Metazoa - 342; Fungi - 112; Plants - 80; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).  protein_id AT5G10360.1p  transcript_id AT5G10360.1  protein_id AT5G10360.1p  transcript_id AT5G10360.1  
At5g10370	chr5:003261245	0.0	W/3261245-3262213,3262432-3263796,3263984-3265754,3265966-3267188	AT5G10370.1  CDS  gene_syn F12B17.280, F12B17_280  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function nucleic acid binding|GO:0003676||ISS  go_function helicase activity|GO:0004386||ISS  go_function ATP binding|GO:0005524||ISS  product helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related  note helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related; FUNCTIONS IN: in 6 functions; LOCATED IN: intracellular, chloroplast; CONTAINS InterPro DOMAIN/s: Helicase-associated region (InterPro:IPR007502), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Region of unknown function DUF1605 (InterPro:IPR011709), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), Zinc finger, C2H2-type (InterPro:IPR007087), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (TAIR:AT4G01020.1); Has 9428 Blast hits to 8884 proteins in 1026 species: Archae - 13; Bacteria - 1902; Metazoa - 3050; Fungi - 1283; Plants - 712; Viruses - 642; Other Eukaryotes - 1826 (source: NCBI BLink).  protein_id AT5G10370.1p  transcript_id AT5G10370.1  protein_id AT5G10370.1p  transcript_id AT5G10370.1  
At5g10380	chr5:003267819	0.0	W/3267819-3268724	AT5G10380.1  CDS  gene_syn F12B17.270, F12B17_270, RING1  gene RING1  function Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators.  go_component plasma membrane|GO:0005886|18643987|IDA  go_process response to chitin|GO:0010200|17722694|IEP  go_process positive regulation of programmed cell death|GO:0043068|18643987|IMP  go_function ubiquitin-protein ligase activity|GO:0004842|18643987|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product RING1; protein binding / ubiquitin-protein ligase/ zinc ion binding  note RING1; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: positive regulation of programmed cell death, response to chitin; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G72220.1); Has 6621 Blast hits to 6604 proteins in 232 species: Archae - 0; Bacteria - 6; Metazoa - 2058; Fungi - 546; Plants - 2764; Viruses - 62; Other Eukaryotes - 1185 (source: NCBI BLink).  protein_id AT5G10380.1p  transcript_id AT5G10380.1  protein_id AT5G10380.1p  transcript_id AT5G10380.1  
At5g10390	chr5:003269065	0.0	C/3269065-3269475	AT5G10390.1  CDS  gene_syn F12B17.260  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product histone H3  note histone H3; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, chloroplast, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H3 (TAIR:AT5G65360.1); Has 10280 Blast hits to 10277 proteins in 5329 species: Archae - 0; Bacteria - 0; Metazoa - 7396; Fungi - 1309; Plants - 999; Viruses - 0; Other Eukaryotes - 576 (source: NCBI BLink).  protein_id AT5G10390.1p  transcript_id AT5G10390.1  protein_id AT5G10390.1p  transcript_id AT5G10390.1  
At5g10400	chr5:003270478	0.0	C/3270478-3270888	AT5G10400.1  CDS  gene_syn F12B17.250  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product histone H3  note histone H3; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, chloroplast, nucleosome; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H3 (TAIR:AT5G65360.1); Has 10280 Blast hits to 10277 proteins in 5329 species: Archae - 0; Bacteria - 0; Metazoa - 7396; Fungi - 1309; Plants - 999; Viruses - 0; Other Eukaryotes - 576 (source: NCBI BLink).  protein_id AT5G10400.1p  transcript_id AT5G10400.1  protein_id AT5G10400.1p  transcript_id AT5G10400.1  
At5g10410	chr5:003271952	0.0	W/3271952-3272364,3272479-3273082	AT5G10410.1  CDS  gene_syn F12B17.240, F12B17_240  go_function phospholipid binding|GO:0005543||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function binding|GO:0005488||ISS  product epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related  note epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related; FUNCTIONS IN: phospholipid binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (TAIR:AT5G65370.1); Has 149 Blast hits to 149 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 146; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G10410.1p  transcript_id AT5G10410.1  protein_id AT5G10410.1p  transcript_id AT5G10410.1  
At5g10420	chr5:003276212	0.0	C/3276212-3276490,3275823-3276110,3275137-3275390,3274958-3275044,3274751-3274807,3274166-3274404,3273979-3274097,3273776-3273865,3273578-3273634	AT5G10420.1  CDS  gene_syn F12B17.230, F12B17_230  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_process ripening|GO:0009835||ISS  go_function antiporter activity|GO:0015297||ISS  product antiporter/ drug transporter  note antiporter/ drug transporter; FUNCTIONS IN: drug transporter activity, antiporter activity; INVOLVED IN: multidrug transport, ripening; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: ripening-responsive protein, putative (TAIR:AT5G65380.1); Has 4694 Blast hits to 4621 proteins in 1007 species: Archae - 70; Bacteria - 2890; Metazoa - 119; Fungi - 210; Plants - 717; Viruses - 0; Other Eukaryotes - 688 (source: NCBI BLink).  protein_id AT5G10420.1p  transcript_id AT5G10420.1  protein_id AT5G10420.1p  transcript_id AT5G10420.1  
At5g10430	chr5:003277828	0.0	C/3277828-3278235	AT5G10430.1  CDS  gene_syn AGP4, ARABINOGALACTAN PROTEIN 4, ARABINOGALACTAN-PROTEIN 4, ATAGP4, F12B17.220, F12B17_220  gene AGP4  function Encodes arabinogalactan-protein (AGP4).  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  product AGP4 (ARABINOGALACTAN PROTEIN 4)  note ARABINOGALACTAN PROTEIN 4 (AGP4); LOCATED IN: anchored to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; Has 108265 Blast hits to 41044 proteins in 1630 species: Archae - 493; Bacteria - 30682; Metazoa - 31258; Fungi - 10073; Plants - 12716; Viruses - 3752; Other Eukaryotes - 19291 (source: NCBI BLink).  protein_id AT5G10430.1p  transcript_id AT5G10430.1  protein_id AT5G10430.1p  transcript_id AT5G10430.1  
At5g10440	chr5:003282109	0.0	C/3282109-3282342,3281880-3281966,3281706-3281804,3281419-3281623,3281162-3281277,3280611-3280766	AT5G10440.1  CDS  gene_syn CYCD4;2, F12B17.210, F12B17_210, cyclin d4;2  gene CYCD4;2  function Encodes a cyclin involved in cell proliferation during stomatal cell lineage development.  go_component nucleus|GO:0005634||IEA  go_process stomatal lineage progression|GO:0010440|17449809|IMP  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase activity|GO:0004693||ISS  product CYCD4;2 (cyclin d4;2); cyclin-dependent protein kinase  note cyclin d4;2 (CYCD4;2); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle, stomatal lineage progression; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCD4;1 (CYCLIN D4;1); cyclin-dependent protein kinase regulator (TAIR:AT5G65420.1); Has 2110 Blast hits to 2107 proteins in 226 species: Archae - 0; Bacteria - 0; Metazoa - 1098; Fungi - 237; Plants - 605; Viruses - 9; Other Eukaryotes - 161 (source: NCBI BLink).  protein_id AT5G10440.1p  transcript_id AT5G10440.1  protein_id AT5G10440.1p  transcript_id AT5G10440.1  
At5g10450	chr5:003285776	0.0	C/3285776-3286261,3285388-3285510,3284666-3284782,3284452-3284466	AT5G10450.2  CDS  gene_syn 14-3-3 PROTEIN G-BOX FACTOR14 LAMBDA, 14-3-3LAMBDA, 14-3-3lambda, AFT1, F12B17.200, F12B17_200, G-box regulating factor 6, GF14 LAMBDA, GRF6  gene GRF6  function Encodes a member of the 14-3-3 gene family that is a lambda isoform (14-3-3& 955;). Interacts with APX3 (ascorbate peroxidase) and AKR2 , suggesting a role in mediating oxidative metabolism in stress response. This protein was shown to colocalize and interact with SERK1 by which it is phosphorylated. This protein is also reported to interact with the phosphorylated form of the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component nucleus|GO:0005634|15592873|IDA  go_component nucleus|GO:0005634||IDA  go_component cytoplasm|GO:0005737||IDA  go_component cytosol|GO:0005829|15592873|IDA  go_component plasma membrane|GO:0005886|15592873|IDA  go_component plasma membrane|GO:0005886||IDA  go_process brassinosteroid mediated signaling|GO:0009742|17681130|IPI  go_process phosphorylation|GO:0016310|15592873|IDA  go_function protein binding|GO:0005515||NAS  go_function protein phosphorylated amino acid binding|GO:0045309|10631267|TAS  product GRF6 (G-box regulating factor 6); protein binding / protein phosphorylated amino acid binding  note G-box regulating factor 6 (GRF6); FUNCTIONS IN: protein phosphorylated amino acid binding, protein binding; INVOLVED IN: response to cadmium ion, brassinosteroid mediated signaling, defense response to bacterium, phosphorylation; LOCATED IN: cytosol, cell wall, nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: GRF8 (GENERAL REGULATORY FACTOR 8); protein binding / protein phosphorylated amino acid binding (TAIR:AT5G65430.2); Has 2079 Blast hits to 2071 proteins in 291 species: Archae - 0; Bacteria - 0; Metazoa - 1027; Fungi - 207; Plants - 540; Viruses - 0; Other Eukaryotes - 305 (source: NCBI BLink).  protein_id AT5G10450.2p  transcript_id AT5G10450.2  protein_id AT5G10450.2p  transcript_id AT5G10450.2  
At5g10450	chr5:003285776	0.0	C/3285776-3286261,3285388-3285510,3284666-3284782,3284452-3284472	AT5G10450.1  CDS  gene_syn 14-3-3 PROTEIN G-BOX FACTOR14 LAMBDA, 14-3-3LAMBDA, 14-3-3lambda, AFT1, F12B17.200, F12B17_200, G-box regulating factor 6, GF14 LAMBDA, GRF6  gene GRF6  function Encodes a member of the 14-3-3 gene family that is a lambda isoform (14-3-3& 955;). Interacts with APX3 (ascorbate peroxidase) and AKR2 , suggesting a role in mediating oxidative metabolism in stress response. This protein was shown to colocalize and interact with SERK1 by which it is phosphorylated. This protein is also reported to interact with the phosphorylated form of the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component nucleus|GO:0005634|15592873|IDA  go_component nucleus|GO:0005634||IDA  go_component cytoplasm|GO:0005737||IDA  go_component cytosol|GO:0005829|15592873|IDA  go_component plasma membrane|GO:0005886|15592873|IDA  go_component plasma membrane|GO:0005886||IDA  go_process brassinosteroid mediated signaling|GO:0009742|17681130|IPI  go_process phosphorylation|GO:0016310|15592873|IDA  go_function protein binding|GO:0005515||NAS  go_function protein phosphorylated amino acid binding|GO:0045309|10631267|TAS  product GRF6 (G-box regulating factor 6); protein binding / protein phosphorylated amino acid binding  note G-box regulating factor 6 (GRF6); FUNCTIONS IN: protein phosphorylated amino acid binding, protein binding; INVOLVED IN: response to cadmium ion, brassinosteroid mediated signaling, defense response to bacterium, phosphorylation; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: GRF8 (GENERAL REGULATORY FACTOR 8); protein binding / protein phosphorylated amino acid binding (TAIR:AT5G65430.1); Has 2079 Blast hits to 2071 proteins in 291 species: Archae - 0; Bacteria - 0; Metazoa - 1027; Fungi - 207; Plants - 540; Viruses - 0; Other Eukaryotes - 305 (source: NCBI BLink).  protein_id AT5G10450.1p  transcript_id AT5G10450.1  protein_id AT5G10450.1p  transcript_id AT5G10450.1  
At5g10455	chr5:003287553	0.0	C/3287553-3287634	AT5G10455.1  tRNA  gene_syn 67610.TRNA-SER-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: GCT)  transcript_id AT5G10455.1  
At5g10460	chr5:003287822	0.0	W/3287822-3287893,3288321-3288390,3288726-3288885,3288974-3289055,3289139-3289355,3289447-3289511,3289590-3289844	AT5G10460.1  CDS  gene_syn F12B17.190, F12B17_190  go_component chloroplast|GO:0009507|18431481|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity|GO:0016787||ISS  product haloacid dehalogenase-like hydrolase family protein  note haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIA, hypothetical 3 (InterPro:IPR006356), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834); Has 2909 Blast hits to 2909 proteins in 598 species: Archae - 47; Bacteria - 1147; Metazoa - 179; Fungi - 36; Plants - 14; Viruses - 0; Other Eukaryotes - 1486 (source: NCBI BLink).  protein_id AT5G10460.1p  transcript_id AT5G10460.1  protein_id AT5G10460.1p  transcript_id AT5G10460.1  
At5g10470	chr5:003297039	0.0	C/3297039-3297248,3296735-3296858,3296370-3296456,3296070-3296240,3295843-3295949,3295217-3295348,3294930-3295108,3294659-3294820,3294483-3294574,3294192-3294343,3293933-3294106,3293692-3293838,3293366-3293554,3293197-3293265,3292938-3292993,3292621-3292828,3292225-3292416,3291925-3292116,3291472-3291822,3291177-3291275,3290934-3291074,3290694-3290852,3290121-3290549	AT5G10470.1  CDS  gene_syn F12B17.180, F12B17_180  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product kinesin motor protein-related  note kinesin motor protein-related; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: plasma membrane, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin motor protein-related (TAIR:AT5G65460.1); Has 10533 Blast hits to 9604 proteins in 413 species: Archae - 30; Bacteria - 296; Metazoa - 5145; Fungi - 1030; Plants - 951; Viruses - 5; Other Eukaryotes - 3076 (source: NCBI BLink).  protein_id AT5G10470.1p  transcript_id AT5G10470.1  protein_id AT5G10470.1p  transcript_id AT5G10470.1  
At5g10470	chr5:003297039	0.0	C/3297039-3297248,3296735-3296858,3296370-3296456,3296070-3296240,3295843-3295949,3295217-3295348,3294930-3295108,3294659-3294820,3294483-3294574,3294192-3294343,3293933-3294106,3293692-3293838,3293366-3293554,3293197-3293265,3292938-3292993,3292621-3292831,3292225-3292416,3291925-3292116,3291472-3291822,3291177-3291275,3290934-3291074,3290694-3290852,3290121-3290549	AT5G10470.2  CDS  gene_syn F12B17.180, F12B17_180  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product kinesin motor protein-related  note kinesin motor protein-related; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin motor protein-related (TAIR:AT5G65460.1); Has 10636 Blast hits to 9695 proteins in 419 species: Archae - 26; Bacteria - 319; Metazoa - 5207; Fungi - 1022; Plants - 952; Viruses - 6; Other Eukaryotes - 3104 (source: NCBI BLink).  protein_id AT5G10470.2p  transcript_id AT5G10470.2  protein_id AT5G10470.2p  transcript_id AT5G10470.2  
At5g10480	chr5:003299978	0.0	C/3299978-3299980,3299769-3299873,3299575-3299593,3299372-3299460,3299218-3299271,3298821-3298891,3298644-3298725,3298208-3298304,3298047-3298117	AT5G10480.2  CDS  gene_syn F12B17.170, F12B17_170, PAS2, PASTICCINO 2, PEP, PEPINO  gene PAS2  function Protein tyrosine phosphatase-like involved in cell division and differentiation. Interacts with CDKA;1 only in its phosphorylated form, preventing dephosphorylation. Overexpression slowed down cell division in suspension cell cultures at the G2-to-M transition and early mitosis and inhibited Arabidopsis seedling growth. Localized in the cytoplasm of dividing cells but moved into the nucleus upon cell differentiation. Based on complementation of yeast mutant PAS2 has acyl-CoA dehydratase activity. It interacts with CER10, a component of the microsomal fatty acid elongase complex, suggesting a role in synthesis of VLCFAs (very long chain fatty acids).  go_component nucleus|GO:0005634|16698944|IDA  go_component cytosol|GO:0005829|16698944|IDA  go_component fatty acid elongase complex|GO:0009923|18799749|IPI  go_process cell differentiation|GO:0030154|9449673|IMP  go_process negative regulation of developmental growth|GO:0048640|16698944|IMP  go_process negative regulation of peptidyl-tyrosine phosphorylation|GO:0050732|16698944|IMP  go_process regulation of cell division|GO:0051302|16698944|IMP  go_function enoyl-CoA hydratase activity|GO:0004300|18799749|IGI  go_function protein tyrosine phosphatase activity|GO:0004725|12472687|ISS  product PAS2 (PASTICCINO 2); enoyl-CoA hydratase/ protein tyrosine phosphatase  note PASTICCINO 2 (PAS2); FUNCTIONS IN: protein tyrosine phosphatase activity, enoyl-CoA hydratase activity; INVOLVED IN: cell differentiation, regulation of cell division, negative regulation of peptidyl-tyrosine phosphorylation, negative regulation of developmental growth; LOCATED IN: cytosol, fatty acid elongase complex, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase-like, PTPLA (InterPro:IPR007482); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59770.1); Has 547 Blast hits to 547 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 289; Fungi - 128; Plants - 72; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT5G10480.2p  transcript_id AT5G10480.2  protein_id AT5G10480.2p  transcript_id AT5G10480.2  
At5g10480	chr5:003299978	0.0	C/3299978-3300048,3299769-3299880,3299575-3299593,3299372-3299460,3299218-3299271,3298821-3298891,3298644-3298725,3298208-3298304,3298047-3298117	AT5G10480.1  CDS  gene_syn F12B17.170, F12B17_170, PAS2, PASTICCINO 2, PEP, PEPINO  gene PAS2  function Protein tyrosine phosphatase-like involved in cell division and differentiation. Interacts with CDKA;1 only in its phosphorylated form, preventing dephosphorylation. Overexpression slowed down cell division in suspension cell cultures at the G2-to-M transition and early mitosis and inhibited Arabidopsis seedling growth. Localized in the cytoplasm of dividing cells but moved into the nucleus upon cell differentiation. Based on complementation of yeast mutant PAS2 has acyl-CoA dehydratase activity. It interacts with CER10, a component of the microsomal fatty acid elongase complex, suggesting a role in synthesis of VLCFAs (very long chain fatty acids).  go_component nucleus|GO:0005634|16698944|IDA  go_component cytosol|GO:0005829|16698944|IDA  go_component fatty acid elongase complex|GO:0009923|18799749|IPI  go_process cell differentiation|GO:0030154|9449673|IMP  go_process negative regulation of developmental growth|GO:0048640|16698944|IMP  go_process negative regulation of peptidyl-tyrosine phosphorylation|GO:0050732|16698944|IMP  go_process regulation of cell division|GO:0051302|16698944|IMP  go_function enoyl-CoA hydratase activity|GO:0004300|18799749|IGI  go_function protein tyrosine phosphatase activity|GO:0004725|12472687|ISS  product PAS2 (PASTICCINO 2); enoyl-CoA hydratase/ protein tyrosine phosphatase  note PASTICCINO 2 (PAS2); FUNCTIONS IN: protein tyrosine phosphatase activity, enoyl-CoA hydratase activity; INVOLVED IN: cell differentiation, regulation of cell division, negative regulation of peptidyl-tyrosine phosphorylation, negative regulation of developmental growth; LOCATED IN: cytosol, fatty acid elongase complex, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase-like, PTPLA (InterPro:IPR007482); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59770.1); Has 554 Blast hits to 554 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 289; Fungi - 128; Plants - 77; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT5G10480.1p  transcript_id AT5G10480.1  protein_id AT5G10480.1p  transcript_id AT5G10480.1  
At5g10490	chr5:003303786	0.0	C/3303786-3303836,3303546-3303706,3303088-3303211,3302856-3302953,3302620-3302733,3302428-3302488,3302106-3302255,3301864-3301974,3301568-3301735,3301352-3301465,3301196-3301252,3300376-3301104	AT5G10490.2  CDS  gene_syn F12B17.160, F12B17_160, MSL2, MscS-LIKE 2  gene MSL2  function A member of MscS-like gene family, structurally very similar to MSL3, comprising of an N-terminal chloroplast transit peptide, five trans-membrane helices and a C-terminal cytoplasmic domain. Mutant plants showed abnormalities in the size and shape of plastids. MSL2-GFP was localized to discrete foci on the plastid envelope and co-localize with the plastid division protein AtMinE.  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastid envelope|GO:0009526|16401419|IDA  go_component membrane|GO:0016020||ISS  go_process plastid organization|GO:0009657|16401419|IGI  go_function ion channel activity|GO:0005216|16401419|IGI  product MSL2 (MscS-LIKE 2); ion channel  note MscS-LIKE 2 (MSL2); FUNCTIONS IN: ion channel activity; INVOLVED IN: plastid organization; LOCATED IN: chloroplast, membrane, plastid envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920), Mechanosensitive ion channel MscS (InterPro:IPR006685); BEST Arabidopsis thaliana protein match is: MSL3 (MscS-LIKE 3); ion channel (TAIR:AT1G58200.2); Has 3298 Blast hits to 3261 proteins in 658 species: Archae - 115; Bacteria - 1447; Metazoa - 226; Fungi - 46; Plants - 105; Viruses - 3; Other Eukaryotes - 1356 (source: NCBI BLink).  protein_id AT5G10490.2p  transcript_id AT5G10490.2  protein_id AT5G10490.2p  transcript_id AT5G10490.2  
At5g10490	chr5:003303928	0.0	C/3303928-3304005,3303786-3303842,3303546-3303706,3303088-3303211,3302856-3302953,3302620-3302733,3302428-3302488,3302106-3302255,3301864-3301974,3301568-3301735,3301352-3301465,3301196-3301252,3300376-3301104	AT5G10490.1  CDS  gene_syn F12B17.160, F12B17_160, MSL2, MscS-LIKE 2  gene MSL2  function A member of MscS-like gene family, structurally very similar to MSL3, comprising of an N-terminal chloroplast transit peptide, five trans-membrane helices and a C-terminal cytoplasmic domain. Mutant plants showed abnormalities in the size and shape of plastids. MSL2-GFP was localized to discrete foci on the plastid envelope and co-localize with the plastid division protein AtMinE.  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastid envelope|GO:0009526|16401419|IDA  go_component membrane|GO:0016020||ISS  go_process plastid organization|GO:0009657|16401419|IGI  go_function ion channel activity|GO:0005216|16401419|IGI  product MSL2 (MscS-LIKE 2); ion channel  note MscS-LIKE 2 (MSL2); FUNCTIONS IN: ion channel activity; INVOLVED IN: plastid organization; LOCATED IN: chloroplast, membrane, plastid envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: MSL3 (MscS-LIKE 3); ion channel (TAIR:AT1G58200.2); Has 3302 Blast hits to 3260 proteins in 659 species: Archae - 115; Bacteria - 1447; Metazoa - 225; Fungi - 48; Plants - 105; Viruses - 3; Other Eukaryotes - 1359 (source: NCBI BLink).  protein_id AT5G10490.1p  transcript_id AT5G10490.1  protein_id AT5G10490.1p  transcript_id AT5G10490.1  
At5g10500	chr5:003305418	0.0	W/3305418-3305511,3305587-3308039	AT5G10500.1  CDS  gene_syn F12B17.150, F12B17_150  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kinase interacting family protein  note kinase interacting family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: KIP1-like (InterPro:IPR011684); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G22560.1); Has 38919 Blast hits to 23587 proteins in 1133 species: Archae - 575; Bacteria - 4617; Metazoa - 17549; Fungi - 3104; Plants - 1303; Viruses - 167; Other Eukaryotes - 11604 (source: NCBI BLink).  protein_id AT5G10500.1p  transcript_id AT5G10500.1  protein_id AT5G10500.1p  transcript_id AT5G10500.1  
At5g10504	chr5:003311395	0.0	C/3311395-3311496	AT5G10504.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G10504.1p  transcript_id AT5G10504.1  protein_id AT5G10504.1p  transcript_id AT5G10504.1  
At5g10510	chr5:003315991	0.0	W/3315991-3316132,3316591-3317269,3317439-3317521,3318904-3318992,3319075-3319148,3319245-3319372,3319458-3320008	AT5G10510.2  CDS  gene_syn AIL6, AINTEGUMENTA-LIKE 6, F12B17.140, F12B17_140, PLETHORA 3, PLT3  gene AIL6  function Encodes an AP2-domain transcription factor involved in root stem cell identity and root development.  go_component nucleus|GO:0005634|10948255|IC  go_process regulation of transcription, DNA-dependent|GO:0006355|8742706|TAS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process organ morphogenesis|GO:0009887|8742707|ISS  go_process organ morphogenesis|GO:0009887|9636071|IMP  go_process organ morphogenesis|GO:0009887||ISS  go_process root development|GO:0048364|17960244|IGI  go_function DNA binding|GO:0003677|9192694|TAS  go_function transcription factor activity|GO:0003700|10948255|ISS  go_function transcription factor activity|GO:0003700|10948255|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product AIL6 (AINTEGUMENTA-LIKE 6); DNA binding / transcription factor  note AINTEGUMENTA-LIKE 6 (AIL6); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: organ morphogenesis, regulation of transcription, DNA-dependent, root development; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AIL7 (AINTEGUMENTA-like 7); DNA binding / transcription factor (TAIR:AT5G65510.1); Has 32543 Blast hits to 9508 proteins in 338 species: Archae - 14; Bacteria - 35; Metazoa - 1065; Fungi - 1114; Plants - 3558; Viruses - 0; Other Eukaryotes - 26757 (source: NCBI BLink).  protein_id AT5G10510.2p  transcript_id AT5G10510.2  protein_id AT5G10510.2p  transcript_id AT5G10510.2  
At5g10510	chr5:003316036	0.0	W/3316036-3316132,3316591-3317269,3317439-3317521,3318813-3318821,3318904-3318992,3319075-3319148,3319245-3319372,3319458-3320008	AT5G10510.1  CDS  gene_syn AIL6, AINTEGUMENTA-LIKE 6, F12B17.140, F12B17_140, PLETHORA 3, PLT3  gene AIL6  function Encodes an AP2-domain transcription factor involved in root stem cell identity and root development.  go_component nucleus|GO:0005634|10948255|IC  go_process regulation of transcription, DNA-dependent|GO:0006355|8742706|TAS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process organ morphogenesis|GO:0009887|8742707|ISS  go_process organ morphogenesis|GO:0009887|9636071|IMP  go_process organ morphogenesis|GO:0009887||ISS  go_process root development|GO:0048364|17960244|IGI  go_function DNA binding|GO:0003677|9192694|TAS  go_function transcription factor activity|GO:0003700|10948255|ISS  go_function transcription factor activity|GO:0003700|10948255|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product AIL6 (AINTEGUMENTA-LIKE 6); DNA binding / transcription factor  note AINTEGUMENTA-LIKE 6 (AIL6); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: organ morphogenesis, regulation of transcription, DNA-dependent, root development; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AIL7 (AINTEGUMENTA-like 7); DNA binding / transcription factor (TAIR:AT5G65510.1); Has 33065 Blast hits to 9636 proteins in 340 species: Archae - 14; Bacteria - 29; Metazoa - 1058; Fungi - 1114; Plants - 4307; Viruses - 0; Other Eukaryotes - 26543 (source: NCBI BLink).  protein_id AT5G10510.1p  transcript_id AT5G10510.1  protein_id AT5G10510.1p  transcript_id AT5G10510.1  
At5g10520	chr5:003322637	0.0	C/3322637-3322649,3322034-3322486,3321698-3321955,3321454-3321608,3321278-3321357,3321054-3321192,3320819-3320968,3320584-3320739	AT5G10520.1  CDS  gene_syn F12B17.130, F12B17_130, RBK1, Rop Binding protein Kinases 1  gene RBK1  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cytosol|GO:0005829|18088316|IDA  go_component endomembrane system|GO:0012505|18088316|IDA  go_process defense response, incompatible interaction|GO:0009814|18088316|IEP  go_function kinase activity|GO:0016301||ISS  product RBK1 (Rop Binding protein Kinases 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note Rop Binding protein Kinases 1 (RBK1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: defense response, incompatible interaction; LOCATED IN: cytosol, endomembrane system; EXPRESSED IN: vascular tissue, leaf mesophyll, root, pollen tube, trichome; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT5G65530.1); Has 80828 Blast hits to 80098 proteins in 3022 species: Archae - 29; Bacteria - 6935; Metazoa - 35383; Fungi - 6459; Plants - 18070; Viruses - 393; Other Eukaryotes - 13559 (source: NCBI BLink).  protein_id AT5G10520.1p  transcript_id AT5G10520.1  protein_id AT5G10520.1p  transcript_id AT5G10520.1  
At5g10525	chr5:003324702	0.0	W/3324702-3324774	AT5G10525.1  tRNA  gene_syn 67610.TRNA-ARG-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: CCT)  transcript_id AT5G10525.1  
At5g10530	chr5:003324978	0.0	C/3324978-3326933	AT5G10530.1  CDS  gene_syn F12B17.120, F12B17_120  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product lectin protein kinase, putative  note lectin protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: legume lectin family protein / protein kinase family protein (TAIR:AT5G65600.1); Has 85997 Blast hits to 84954 proteins in 3172 species: Archae - 54; Bacteria - 7724; Metazoa - 37446; Fungi - 6441; Plants - 19590; Viruses - 378; Other Eukaryotes - 14364 (source: NCBI BLink).  protein_id AT5G10530.1p  transcript_id AT5G10530.1  protein_id AT5G10530.1p  transcript_id AT5G10530.1  
At5g10540	chr5:003328119	0.0	W/3328119-3328238,3328391-3328558,3328801-3328924,3329061-3329137,3329250-3329393,3329482-3329712,3329787-3329877,3330052-3330173,3330263-3330370,3330460-3330705,3331113-3331258,3331405-3331522,3331630-3331789,3331905-3331936,3332045-3332110,3332201-3332272,3332382-3332462	AT5G10540.1  CDS  gene_syn F12B17.110, F12B17_110  go_component chloroplast|GO:0009507|15028209|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function metalloendopeptidase activity|GO:0004222||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_process proteolysis|GO:0006508||ISS  go_function metalloendopeptidase activity|GO:0004222||ISS  product peptidase M3 family protein / thimet oligopeptidase family protein  note peptidase M3 family protein / thimet oligopeptidase family protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: response to cadmium ion, proteolysis; LOCATED IN: cytosol, apoplast, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M3A and M3B, thimet/oligopeptidase F (InterPro:IPR001567); BEST Arabidopsis thaliana protein match is: peptidase M3 family protein / thimet oligopeptidase family protein (TAIR:AT5G65620.1); Has 3913 Blast hits to 3911 proteins in 857 species: Archae - 2; Bacteria - 1835; Metazoa - 299; Fungi - 294; Plants - 51; Viruses - 0; Other Eukaryotes - 1432 (source: NCBI BLink).  protein_id AT5G10540.1p  transcript_id AT5G10540.1  protein_id AT5G10540.1p  transcript_id AT5G10540.1  
At5g10550	chr5:003335014	0.0	C/3335014-3335232,3333459-3334919,3333172-3333376,3332999-3333080,3332855-3332924	AT5G10550.1  CDS  gene_syn F12B17.100, F12B17_100, GTE2, Global transcription factor group E 2  gene GTE2  function This gene is predicted to encode a bromodomain-containing protein. A plant line expressing RNAi constructs targeted against GTE7 shows some resistance to agrobacterium-mediated root transformation.  go_component cellular_component|GO:0005575||ND  go_process DNA mediated transformation|GO:0009294|17827277|IMP  go_function DNA binding|GO:0003677||ISS  product GTE2 (Global transcription factor group E 2); DNA binding  note Global transcription factor group E 2 (GTE2); FUNCTIONS IN: DNA binding; INVOLVED IN: DNA mediated transformation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: GTE7 (Global transcription factor group E 7); DNA binding (TAIR:AT5G65630.1); Has 10711 Blast hits to 7023 proteins in 467 species: Archae - 6; Bacteria - 1796; Metazoa - 4431; Fungi - 1038; Plants - 1468; Viruses - 407; Other Eukaryotes - 1565 (source: NCBI BLink).  protein_id AT5G10550.1p  transcript_id AT5G10550.1  protein_id AT5G10550.1p  transcript_id AT5G10550.1  
At5g10560	chr5:003338608	0.0	C/3338608-3339351,3338191-3338357,3337983-3338080,3337553-3337903,3337049-3337465,3336335-3336936	AT5G10560.1  CDS  gene_syn F12B17.90, F12B17_90  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function xylan 1,4-beta-xylosidase activity|GO:0009044|15517348|TAS  product glycosyl hydrolase family 3 protein  note glycosyl hydrolase family 3 protein; FUNCTIONS IN: xylan 1,4-beta-xylosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 3 protein (TAIR:AT1G78060.1); Has 5112 Blast hits to 4512 proteins in 661 species: Archae - 16; Bacteria - 2460; Metazoa - 12; Fungi - 920; Plants - 292; Viruses - 0; Other Eukaryotes - 1412 (source: NCBI BLink).  protein_id AT5G10560.1p  transcript_id AT5G10560.1  protein_id AT5G10560.1p  transcript_id AT5G10560.1  
At5g10570	chr5:003341357	0.0	W/3341357-3341893,3342136-3342291,3342514-3342681,3342791-3342877	AT5G10570.1  CDS  gene_syn F12B17.80, F12B17_80  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: bHLH093 (beta HLH protein 93); DNA binding / transcription factor (TAIR:AT5G65640.1); Has 1612 Blast hits to 1612 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 14; Plants - 1483; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT5G10570.1p  transcript_id AT5G10570.1  protein_id AT5G10570.1p  transcript_id AT5G10570.1  
At5g10572	chr5:003343593	0.0	W/3343593-3343725	AT5G10572.1  snoRNA  gene_syn SNOR77  gene SNOR77  function Encodes a H/ACA-box snoRNA (snoR77). Gb: AL353995  go_component box H/ACA snoRNP complex|GO:0031429||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product SNOR77; snoRNA  transcript_id AT5G10572.1  
At5g10580	chr5:003347511	0.0	W/3347511-3347678,3348085-3348468,3349019-3349045	AT5G10580.2  CDS  gene_syn F12B17.70, F12B17_70  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF599 (InterPro:IPR006747); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31330.1); Has 126 Blast hits to 126 proteins in 25 species: Archae - 0; Bacteria - 29; Metazoa - 0; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G10580.2p  transcript_id AT5G10580.2  protein_id AT5G10580.2p  transcript_id AT5G10580.2  
At5g10580	chr5:003347511	0.0	W/3347511-3347678,3348085-3348657	AT5G10580.1  CDS  gene_syn F12B17.70, F12B17_70  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF599 (InterPro:IPR006747); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31330.1); Has 253 Blast hits to 252 proteins in 83 species: Archae - 0; Bacteria - 138; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT5G10580.1p  transcript_id AT5G10580.1  protein_id AT5G10580.1p  transcript_id AT5G10580.1  
At5g10590	chr5:003349376	0.0	C/3349376-3349468,3349134-3349283	AT5G10590.1  CDS  gene_syn F12B17.60, F12B17_60  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G10590.1p  transcript_id AT5G10590.1  protein_id AT5G10590.1p  transcript_id AT5G10590.1  
At5g10600	chr5:003351227	0.0	W/3351227-3352777	AT5G10600.1  CDS  gene_syn CYP81K2, F12B17.50, F12B17_50  gene CYP81K2  function member of CYP81K  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP81K2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP81K2; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP81K1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT5G10610.1); Has 22695 Blast hits to 22577 proteins in 1216 species: Archae - 23; Bacteria - 1892; Metazoa - 10276; Fungi - 4110; Plants - 5654; Viruses - 3; Other Eukaryotes - 737 (source: NCBI BLink).  protein_id AT5G10600.1p  transcript_id AT5G10600.1  protein_id AT5G10600.1p  transcript_id AT5G10600.1  
At5g10610	chr5:003353518	0.0	W/3353518-3355020	AT5G10610.1  CDS  gene_syn CYP81K1, F12B17.40, F12B17_40  gene CYP81K1  function member of CYP81K  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP81K1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP81K1; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP81K2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT5G10600.1); Has 22199 Blast hits to 22078 proteins in 1186 species: Archae - 21; Bacteria - 1723; Metazoa - 10202; Fungi - 3908; Plants - 5664; Viruses - 3; Other Eukaryotes - 678 (source: NCBI BLink).  protein_id AT5G10610.1p  transcript_id AT5G10610.1  protein_id AT5G10610.1p  transcript_id AT5G10610.1  
At5g10620	chr5:003356540	0.0	C/3356540-3356615,3356412-3356443,3356190-3356332,3356035-3356101,3355878-3355955,3355580-3355725,3355466-3355505	AT5G10620.1  CDS  gene_syn F12B17.30, F12B17_30  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: SPOUT methyltransferase, predicted (InterPro:IPR003742); Has 3142 Blast hits to 3142 proteins in 1101 species: Archae - 27; Bacteria - 2338; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 755 (source: NCBI BLink).  protein_id AT5G10620.1p  transcript_id AT5G10620.1  protein_id AT5G10620.1p  transcript_id AT5G10620.1  
At5g10625	chr5:003358934	0.0	W/3358934-3359272	AT5G10625.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: FPF1 (FLOWERING PROMOTING FACTOR 1) (TAIR:AT5G24860.1); Has 61 Blast hits to 61 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G10625.1p  transcript_id AT5G10625.1  protein_id AT5G10625.1p  transcript_id AT5G10625.1  
At5g10630	chr5:003360561	0.0	W/3360561-3360663,3360760-3360921,3361499-3361576,3361936-3362324,3362403-3362513,3362602-3363089,3363200-3363368,3363721-3363960,3364065-3364199,3364286-3364414	AT5G10630.1  CDS  gene_syn F12B17.20, F12B17_20  go_component intracellular|GO:0005622||IEA  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function translation elongation factor activity|GO:0003746||ISS  product elongation factor 1-alpha, putative / EF-1-alpha, putative  note elongation factor 1-alpha, putative / EF-1-alpha, putative; FUNCTIONS IN: GTP binding, translation elongation factor activity, GTPase activity, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Zinc finger, RanBP2-type (InterPro:IPR001876), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: EF-1-alpha-related GTP-binding protein, putative (TAIR:AT1G18070.2); Has 58110 Blast hits to 58057 proteins in 13368 species: Archae - 652; Bacteria - 20622; Metazoa - 14216; Fungi - 8620; Plants - 1274; Viruses - 3; Other Eukaryotes - 12723 (source: NCBI BLink).  protein_id AT5G10630.1p  transcript_id AT5G10630.1  protein_id AT5G10630.1p  transcript_id AT5G10630.1  
At5g10650	chr5:003366139	0.0	C/3366139-3367263,3365992-3366042,3365794-3365895,3365529-3365687,3365237-3365377	AT5G10650.1  CDS  gene_syn MAJ23.10, MAJ23_10  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G24870.2); Has 8469 Blast hits to 6498 proteins in 243 species: Archae - 0; Bacteria - 110; Metazoa - 2635; Fungi - 536; Plants - 2504; Viruses - 44; Other Eukaryotes - 2640 (source: NCBI BLink).  protein_id AT5G10650.1p  transcript_id AT5G10650.1  protein_id AT5G10650.1p  transcript_id AT5G10650.1  
At5g10650	chr5:003366139	0.0	C/3366139-3367263,3365992-3366042,3365794-3365895,3365529-3365687,3365237-3365377	AT5G10650.2  CDS  gene_syn MAJ23.10, MAJ23_10  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G24870.2); Has 8469 Blast hits to 6498 proteins in 243 species: Archae - 0; Bacteria - 110; Metazoa - 2635; Fungi - 536; Plants - 2504; Viruses - 44; Other Eukaryotes - 2640 (source: NCBI BLink).  protein_id AT5G10650.2p  transcript_id AT5G10650.2  protein_id AT5G10650.2p  transcript_id AT5G10650.2  
At5g10660	chr5:003370553	0.0	W/3370553-3371776	AT5G10660.1  CDS  gene_syn MAJ23.20, MAJ23_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product calmodulin-binding protein-related  note calmodulin-binding protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24880.1); Has 66143 Blast hits to 33851 proteins in 1379 species: Archae - 186; Bacteria - 5363; Metazoa - 27710; Fungi - 7260; Plants - 2237; Viruses - 618; Other Eukaryotes - 22769 (source: NCBI BLink).  protein_id AT5G10660.1p  transcript_id AT5G10660.1  protein_id AT5G10660.1p  transcript_id AT5G10660.1  
At5g10670	chr5:003372087	0.0	C/3372087-3372838	AT5G10670.1  mRNA_TE_gene  pseudo  gene_syn MAJ23.30, MAJ23_30  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28240.1); similar to hypothetical protein 40.t00048 [Brassica oleracea] (GB:ABD65163.1)  
At5g10680	chr5:003373584	0.0	W/3373584-3374309	AT5G10680.1  CDS  gene_syn MAJ23.40, MAJ23_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product calmodulin-binding protein-related  note calmodulin-binding protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: AHK5 (ARABIDOPSIS HISTIDINE KINASE 5); protein histidine kinase (TAIR:AT5G10720.1); Has 5965 Blast hits to 3371 proteins in 295 species: Archae - 25; Bacteria - 433; Metazoa - 2469; Fungi - 274; Plants - 93; Viruses - 101; Other Eukaryotes - 2570 (source: NCBI BLink).  protein_id AT5G10680.1p  transcript_id AT5G10680.1  protein_id AT5G10680.1p  transcript_id AT5G10680.1  
At5g10690	chr5:003376970	0.0	C/3376970-3377332,3376726-3376858,3376501-3376598,3376260-3376421,3376076-3376144,3375819-3375954,3375484-3375716,3375266-3375343,3375084-3375152,3374765-3374941,3374443-3374667	AT5G10690.1  CDS  gene_syn MAJ23.50, MAJ23_50  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein  note pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12775.1); Has 9217 Blast hits to 4059 proteins in 145 species: Archae - 2; Bacteria - 6; Metazoa - 124; Fungi - 115; Plants - 8658; Viruses - 0; Other Eukaryotes - 312 (source: NCBI BLink).  protein_id AT5G10690.1p  transcript_id AT5G10690.1  protein_id AT5G10690.1p  transcript_id AT5G10690.1  
At5g10695	chr5:003377817	0.0	W/3377817-3378020	AT5G10695.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57123.1); Has 54 Blast hits to 54 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G10695.1p  transcript_id AT5G10695.1  protein_id AT5G10695.1p  transcript_id AT5G10695.1  
At5g10700	chr5:003378493	0.0	C/3378493-3378867,3378229-3378407,3378053-3378101	AT5G10700.1  CDS  gene_syn MAJ23.60, MAJ23_60  go_process translation|GO:0006412||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function aminoacyl-tRNA hydrolase activity|GO:0004045||IEA  go_function protein tyrosine phosphatase activity|GO:0004725||IEA  product aminoacyl-tRNA hydrolase/ protein tyrosine phosphatase  note aminoacyl-tRNA hydrolase/ protein tyrosine phosphatase; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity, protein tyrosine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation, translation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, PTH2 (InterPro:IPR002833), Protein-tyrosine phosphatase, low molecular weight (InterPro:IPR017867); Has 128 Blast hits to 128 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 81; Fungi - 6; Plants - 15; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT5G10700.1p  transcript_id AT5G10700.1  protein_id AT5G10700.1p  transcript_id AT5G10700.1  
At5g10710	chr5:003379619	0.0	W/3379619-3379630,3379727-3379775,3379876-3379924,3380009-3380079,3380208-3380266,3380521-3380619,3381100-3381157,3381390-3381526,3381602-3381658,3382100-3382197,3382327-3382508,3382581-3382648	AT5G10710.1  CDS  gene_syn MAJ23.70, MAJ23_70  go_component chromosome, centromeric region|GO:0000775||IEA  go_component nucleus|GO:0005634||IEA  go_process chromosome segregation|GO:0007059||IEA  go_process cell division|GO:0051301||IEA  go_function protein binding|GO:0005515||IEA  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: chromosome segregation, cell division; LOCATED IN: chromosome, centromeric region, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Centromere protein Cenp-O (InterPro:IPR018464); Has 27 Blast hits to 27 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G10710.1p  transcript_id AT5G10710.1  protein_id AT5G10710.1p  transcript_id AT5G10710.1  
At5g10710	chr5:003379619	0.0	W/3379619-3379630,3379727-3379775,3379876-3379924,3380009-3380079,3380208-3380266,3380521-3380619,3381100-3381157,3381390-3381526,3381602-3381658,3382100-3382197,3382327-3382508,3382581-3382648	AT5G10710.2  CDS  gene_syn MAJ23.70, MAJ23_70  go_component chromosome, centromeric region|GO:0000775||IEA  go_component nucleus|GO:0005634||IEA  go_process chromosome segregation|GO:0007059||IEA  go_process cell division|GO:0051301||IEA  go_function protein binding|GO:0005515||IEA  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: chromosome segregation, cell division; LOCATED IN: chromosome, centromeric region, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Centromere protein Cenp-O (InterPro:IPR018464); Has 27 Blast hits to 27 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G10710.2p  transcript_id AT5G10710.2  protein_id AT5G10710.2p  transcript_id AT5G10710.2  
At5g10720	chr5:003386835	0.0	W/3386835-3387539,3387617-3387673,3387766-3387993,3388076-3388169,3388251-3388457,3388559-3388689,3388767-3388816,3388890-3389071,3389168-3389271,3389354-3390076,3390165-3390329,3390419-3390541	AT5G10720.1  CDS  gene_syn AHK5, ARABIDOPSIS HISTIDINE KINASE 5, CKI2, CYTOKININ INDEPENDENT 2, MAJ23.80, MAJ23_80  gene AHK5  function member of Histidine Kinase  go_component vacuole|GO:0005773|15539469|IDA  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_function protein histidine kinase activity|GO:0004673||ISS  product AHK5 (ARABIDOPSIS HISTIDINE KINASE 5); protein histidine kinase  note ARABIDOPSIS HISTIDINE KINASE 5 (AHK5); FUNCTIONS IN: protein histidine kinase activity; INVOLVED IN: cytokinin mediated signaling; LOCATED IN: vacuole; EXPRESSED IN: male gametophyte, root; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), CheY-like (InterPro:IPR011006), Signal transduction histidine kinase, core (InterPro:IPR005467), Signal transduction response regulator, receiver region (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region (InterPro:IPR003661), ATP-binding region, ATPase-like (InterPro:IPR003594), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: calmodulin-binding protein-related (TAIR:AT5G10680.1); Has 85224 Blast hits to 75119 proteins in 1880 species: Archae - 692; Bacteria - 70812; Metazoa - 220; Fungi - 1659; Plants - 1369; Viruses - 33; Other Eukaryotes - 10439 (source: NCBI BLink).  protein_id AT5G10720.1p  transcript_id AT5G10720.1  protein_id AT5G10720.1p  transcript_id AT5G10720.1  
At5g10730	chr5:003392892	0.0	C/3392892-3392947,3392532-3392649,3392340-3392428,3392124-3392179,3391977-3392032,3391751-3391844,3391384-3391463,3391252-3391294,3391076-3391167,3390822-3391001	AT5G10730.1  CDS  gene_syn MAJ23.90, MAJ23_90  go_component plasma membrane|GO:0005886|15060130|IDA  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  product binding / catalytic/ coenzyme binding  note binding / catalytic/ coenzyme binding; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: cellular metabolic process, metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: dehydrogenase-related (TAIR:AT5G15910.1); Has 2817 Blast hits to 2817 proteins in 746 species: Archae - 59; Bacteria - 1671; Metazoa - 115; Fungi - 146; Plants - 119; Viruses - 0; Other Eukaryotes - 707 (source: NCBI BLink).  protein_id AT5G10730.1p  transcript_id AT5G10730.1  protein_id AT5G10730.1p  transcript_id AT5G10730.1  
At5g10740	chr5:003395769	0.0	C/3395769-3395848,3395407-3395534,3395092-3395190,3394835-3394993,3394592-3394678,3394400-3394491,3394227-3394301,3393797-3394141	AT5G10740.1  CDS  gene_syn MAJ23.3  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C-related / PP2C-related  note protein phosphatase 2C-related / PP2C-related; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT5G24940.1); Has 5631 Blast hits to 5529 proteins in 624 species: Archae - 9; Bacteria - 1045; Metazoa - 1489; Fungi - 552; Plants - 1360; Viruses - 11; Other Eukaryotes - 1165 (source: NCBI BLink).  protein_id AT5G10740.1p  transcript_id AT5G10740.1  protein_id AT5G10740.1p  transcript_id AT5G10740.1  
At5g10745	chr5:003396553	0.0	W/3396553-3396642,3396730-3396795	AT5G10745.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 14 Blast hits to 14 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G10745.1p  transcript_id AT5G10745.1  protein_id AT5G10745.1p  transcript_id AT5G10745.1  
At5g10750	chr5:003399072	0.0	W/3399072-3399980	AT5G10750.1  CDS  gene_syn MAJ23.2  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24990.1); Has 176 Blast hits to 175 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 165; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G10750.1p  transcript_id AT5G10750.1  protein_id AT5G10750.1p  transcript_id AT5G10750.1  
At5g10760	chr5:003401994	0.0	C/3401994-3402165,3400671-3401893	AT5G10760.1  CDS  gene_syn MAJ23.1  go_component apoplast|GO:0048046|18538804|IDA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: apoplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: chloroplast nucleoid DNA-binding protein, putative (TAIR:AT5G10770.1); Has 2973 Blast hits to 2958 proteins in 288 species: Archae - 0; Bacteria - 0; Metazoa - 1026; Fungi - 529; Plants - 1221; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink).  protein_id AT5G10760.1p  transcript_id AT5G10760.1  protein_id AT5G10760.1p  transcript_id AT5G10760.1  
At5g10770	chr5:003405169	0.0	C/3405169-3405331,3404241-3404678,3403331-3404154	AT5G10770.1  CDS  gene_syn T30N20.40, T30N20_40  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_function DNA binding|GO:0003677||ISS  product chloroplast nucleoid DNA-binding protein, putative  note chloroplast nucleoid DNA-binding protein, putative; FUNCTIONS IN: DNA binding, aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT5G10760.1); Has 2665 Blast hits to 2650 proteins in 267 species: Archae - 0; Bacteria - 6; Metazoa - 898; Fungi - 470; Plants - 1168; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).  protein_id AT5G10770.1p  transcript_id AT5G10770.1  protein_id AT5G10770.1p  transcript_id AT5G10770.1  
At5g10780	chr5:003408422	0.0	W/3408422-3408550,3408702-3408758,3408944-3409097,3409306-3409403,3409525-3409590,3409721-3409759	AT5G10780.1  CDS  gene_syn T30N20.50, T30N20_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP017207, transmembrane protein 85 (InterPro:IPR016687), Protein of unknown function DUF1077 (InterPro:IPR009445); Has 281 Blast hits to 281 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 114; Fungi - 83; Plants - 23; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT5G10780.1p  transcript_id AT5G10780.1  protein_id AT5G10780.1p  transcript_id AT5G10780.1  
At5g10780	chr5:003408422	0.0	W/3408422-3408550,3408702-3408758,3408944-3409097,3409306-3409403,3409525-3409590,3409725-3409784	AT5G10780.2  CDS  gene_syn T30N20.50, T30N20_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP017207, transmembrane protein 85 (InterPro:IPR016687), Protein of unknown function DUF1077 (InterPro:IPR009445); Has 281 Blast hits to 281 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 114; Fungi - 83; Plants - 23; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT5G10780.2p  transcript_id AT5G10780.2  protein_id AT5G10780.2p  transcript_id AT5G10780.2  
At5g10790	chr5:003410638	0.0	W/3410638-3411392,3411516-3411634,3411760-3412559	AT5G10790.1  CDS  gene_syn T30N20.60, T30N20_60, UBIQUITIN-SPECIFIC PROTEASE 22, UBP22  gene UBP22  function Encodes a ubiquitin-specific protease.  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function ubiquitin-specific protease activity|GO:0004843||ISS  product UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22); ubiquitin thiolesterase/ ubiquitin-specific protease/ zinc ion binding  note UBIQUITIN-SPECIFIC PROTEASE 22 (UBP22); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, UBP-type (InterPro:IPR001607), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: UBP23 (UBIQUITIN-SPECIFIC PROTEASE 23); ubiquitin thiolesterase/ ubiquitin-specific protease (TAIR:AT5G57990.1); Has 6327 Blast hits to 5349 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 3684; Fungi - 916; Plants - 516; Viruses - 5; Other Eukaryotes - 1206 (source: NCBI BLink).  protein_id AT5G10790.1p  transcript_id AT5G10790.1  protein_id AT5G10790.1p  transcript_id AT5G10790.1  
At5g10800	chr5:003418297	0.0	C/3418297-3418382,3418087-3418220,3417864-3417909,3417510-3417570,3417264-3417410,3417051-3417167,3416784-3416949,3416213-3416325,3415991-3416062,3415611-3415832,3415464-3415522,3415283-3415367,3415042-3415179,3414569-3414793,3413754-3414490,3413361-3413503,3412898-3413190	AT5G10800.1  CDS  gene_syn T30N20.70, T30N20_70  go_process RNA processing|GO:0006396||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, sepal, flower, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061), Regulation of nuclear pre-mRNA protein (InterPro:IPR006569), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), mRNA splicing factor, Cwf21 (InterPro:IPR013170), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT5G25060.1); Has 15664 Blast hits to 9415 proteins in 392 species: Archae - 6; Bacteria - 314; Metazoa - 8823; Fungi - 2064; Plants - 1131; Viruses - 30; Other Eukaryotes - 3296 (source: NCBI BLink).  protein_id AT5G10800.1p  transcript_id AT5G10800.1  protein_id AT5G10800.1p  transcript_id AT5G10800.1  
At5g10810	chr5:003420554	0.0	C/3420554-3420556,3420195-3420300,3419631-3419751,3418897-3418996	AT5G10810.1  CDS  gene_syn ATER, ENHANCER OF RUDIMENTARY HOMOLOG ATER, T30N20.80, T30N20_80  gene ATER  function enhancer of rudimentary homolog ATER  go_process biological_process|GO:0008150||ND  product ATER  note ATER; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Enhancer of rudimentary (InterPro:IPR000781); Has 239 Blast hits to 239 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 193; Fungi - 2; Plants - 24; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT5G10810.1p  transcript_id AT5G10810.1  protein_id AT5G10810.1p  transcript_id AT5G10810.1  
At5g10820	chr5:003422507	0.0	C/3422507-3423166,3422295-3422399,3421921-3422091,3420876-3421451	AT5G10820.1  CDS  gene_syn T30N20.90, T30N20_90  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product integral membrane transporter family protein  note integral membrane transporter family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily, general substrate transporter (InterPro:IPR016196), Biopterin transport-related protein BT1 (InterPro:IPR004324); BEST Arabidopsis thaliana protein match is: integral membrane transporter family protein (TAIR:AT1G79710.1); Has 583 Blast hits to 569 proteins in 99 species: Archae - 0; Bacteria - 81; Metazoa - 6; Fungi - 1; Plants - 132; Viruses - 0; Other Eukaryotes - 363 (source: NCBI BLink).  protein_id AT5G10820.1p  transcript_id AT5G10820.1  protein_id AT5G10820.1p  transcript_id AT5G10820.1  
At5g10830	chr5:003423731	0.0	W/3423731-3423880,3424014-3424649	AT5G10830.1  CDS  gene_syn T30N20.100, T30N20_100  go_process metabolic process|GO:0008152||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  product embryo-abundant protein-related  note embryo-abundant protein-related; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: embryo-abundant protein-related (TAIR:AT4G22530.1); Has 723 Blast hits to 719 proteins in 270 species: Archae - 2; Bacteria - 413; Metazoa - 59; Fungi - 86; Plants - 109; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT5G10830.1p  transcript_id AT5G10830.1  protein_id AT5G10830.1p  transcript_id AT5G10830.1  
At5g10840	chr5:003427660	0.0	C/3427660-3427797,3427015-3427179,3426803-3426912,3426596-3426707,3426400-3426512,3426169-3426319,3424910-3426067	AT5G10840.1  CDS  gene_syn T30N20.110, T30N20_110  go_component plasma membrane|GO:0005886|17151019|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_component integral to membrane|GO:0016021||ISS  product endomembrane protein 70, putative  note endomembrane protein 70, putative; LOCATED IN: integral to membrane, Golgi apparatus, plasma membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: endomembrane protein 70, putative (TAIR:AT5G25100.1); Has 1057 Blast hits to 1040 proteins in 178 species: Archae - 0; Bacteria - 38; Metazoa - 446; Fungi - 142; Plants - 235; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink).  protein_id AT5G10840.1p  transcript_id AT5G10840.1  protein_id AT5G10840.1p  transcript_id AT5G10840.1  
At5g10850	chr5:003428159	0.0	W/3428159-3428824	AT5G10850.1  mRNA_TE_gene  pseudo  gene_syn T30N20.120, T30N20_120  note Transposable element gene, similar to nucleic acid binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G01050.1); similar to unnamed protein product [Ipomoea batatas] (GB:BAE79383.1)  
At5g10860	chr5:003429882	0.0	C/3429882-3430142,3429720-3429801,3429561-3429634,3429419-3429479,3429173-3429315	AT5G10860.1  CDS  gene_syn T30N20.130, T30N20_130  go_component mitochondrion|GO:0005739|18385124|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  product CBS domain-containing protein  note CBS domain-containing protein; INVOLVED IN: response to salt stress; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47271.1); Has 5362 Blast hits to 5261 proteins in 950 species: Archae - 671; Bacteria - 3582; Metazoa - 2; Fungi - 45; Plants - 149; Viruses - 0; Other Eukaryotes - 913 (source: NCBI BLink).  protein_id AT5G10860.1p  transcript_id AT5G10860.1  protein_id AT5G10860.1p  transcript_id AT5G10860.1  
At5g10870	chr5:003432039	0.0	C/3432039-3432272,3431426-3431512,3431199-3431342,3431020-3431112,3430691-3430930	AT5G10870.1  CDS  gene_syn ATCM2, chorismate mutase 2  gene ATCM2  function Encodes chorismate mutase AtCM2.  go_component cytosol|GO:0005829|8953244|ISS  go_process aromatic amino acid family biosynthetic process|GO:0009073|8953244|TAS  go_function chorismate mutase activity|GO:0004106|8953244|IGI  product ATCM2 (chorismate mutase 2); chorismate mutase  note chorismate mutase 2 (ATCM2); FUNCTIONS IN: chorismate mutase activity; INVOLVED IN: aromatic amino acid family biosynthetic process; LOCATED IN: cytosol; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chorismate mutase of the AroQ class, eukaryotic type (InterPro:IPR008238), Chorismate mutase (InterPro:IPR002701); BEST Arabidopsis thaliana protein match is: CM1 (CHORISMATE MUTASE 1); L-ascorbate peroxidase/ chorismate mutase (TAIR:AT3G29200.1); Has 178 Blast hits to 178 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 99; Plants - 72; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G10870.1p  transcript_id AT5G10870.1  protein_id AT5G10870.1p  transcript_id AT5G10870.1  
At5g10880	chr5:003432693	0.0	W/3432693-3432866,3432956-3433037,3433194-3433867	AT5G10880.1  CDS  gene_syn T30N20.150, T30N20_150  go_component cytoplasm|GO:0005737||IEA  go_process translation|GO:0006412||IEA  go_process prolyl-tRNA aminoacylation|GO:0006433||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function proline-tRNA ligase activity|GO:0004827||IEA  go_function ATP binding|GO:0005524||IEA  go_process translation|GO:0006412||ISS  go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS  go_function ATP binding|GO:0005524||ISS  product tRNA synthetase-related / tRNA ligase-related  note tRNA synthetase-related / tRNA ligase-related; FUNCTIONS IN: proline-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: prolyl-tRNA aminoacylation, translation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Prolyl-tRNA synthetase, class IIa, prokaryotic-type (InterPro:IPR004499), Prolyl-tRNA synthetase, class II, C-terminal (InterPro:IPR016061), Anticodon-binding (InterPro:IPR004154), Prolyl-tRNA synthetase, class II (InterPro:IPR017449); BEST Arabidopsis thaliana protein match is: tRNA synthetase class II (G, H, P and S) family protein (TAIR:AT3G62120.2); Has 5080 Blast hits to 4729 proteins in 1414 species: Archae - 177; Bacteria - 3190; Metazoa - 265; Fungi - 181; Plants - 65; Viruses - 0; Other Eukaryotes - 1202 (source: NCBI BLink).  protein_id AT5G10880.1p  transcript_id AT5G10880.1  protein_id AT5G10880.1p  transcript_id AT5G10880.1  
At5g10890	chr5:003434953	0.0	C/3434953-3435067,3434030-3434802	AT5G10890.1  CDS  gene_syn T30N20.160, T30N20_160  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product myosin heavy chain-related  note myosin heavy chain-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: WRKY family transcription factor (TAIR:AT4G31805.1); Has 42 Blast hits to 42 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G10890.1p  transcript_id AT5G10890.1  protein_id AT5G10890.1p  transcript_id AT5G10890.1  
At5g10900	chr5:003439209	0.0	C/3439209-3439221,3438925-3439088,3438788-3438838,3438108-3438713,3437301-3437744,3437067-3437207,3436870-3436971,3436597-3436800,3436413-3436490	AT5G10900.1  CDS  gene_syn T30N20.170, T30N20_170  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product calcineurin-like phosphoesterase family protein  note calcineurin-like phosphoesterase family protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: PP7 (SERINE/THREONINE PHOSPHATASE 7); protein serine/threonine phosphatase (TAIR:AT5G63870.2); Has 4782 Blast hits to 4762 proteins in 283 species: Archae - 51; Bacteria - 9; Metazoa - 1939; Fungi - 835; Plants - 558; Viruses - 0; Other Eukaryotes - 1390 (source: NCBI BLink).  protein_id AT5G10900.1p  transcript_id AT5G10900.1  protein_id AT5G10900.1p  transcript_id AT5G10900.1  
At5g10910	chr5:003439588	0.0	W/3439588-3439971,3440115-3440345,3440428-3440496,3440603-3440795,3441090-3441517	AT5G10910.1  CDS  gene_syn T30N20.180, T30N20_180  go_function methyltransferase activity|GO:0008168||IEA  go_function methyltransferase activity|GO:0008168||ISS  product mraW methylase family protein  note mraW methylase family protein; FUNCTIONS IN: methyltransferase activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial methyltransferase (InterPro:IPR002903); Has 5437 Blast hits to 5435 proteins in 1466 species: Archae - 0; Bacteria - 2709; Metazoa - 101; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 2607 (source: NCBI BLink).  protein_id AT5G10910.1p  transcript_id AT5G10910.1  protein_id AT5G10910.1p  transcript_id AT5G10910.1  
At5g10920	chr5:003441805	0.0	W/3441805-3442116,3442237-3442617,3442835-3442983,3443095-3443551,3443638-3443892	AT5G10920.1  CDS  gene_syn T30N20.190, T30N20_190  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_process arginine biosynthetic process|GO:0006526||IEA  go_process arginine biosynthetic process via ornithine|GO:0042450||IEA  go_function catalytic activity|GO:0003824||IEA  go_function argininosuccinate lyase activity|GO:0004056||IEA  go_function argininosuccinate lyase activity|GO:0004056||ISS  product argininosuccinate lyase, putative / arginosuccinase, putative  note argininosuccinate lyase, putative / arginosuccinase, putative; FUNCTIONS IN: argininosuccinate lyase activity, catalytic activity; INVOLVED IN: arginine biosynthetic process via ornithine, arginine biosynthetic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Argininosuccinate lyase (InterPro:IPR009049), L-Aspartase-like (InterPro:IPR008948), Delta crystallin (InterPro:IPR003031), Fumarate lyase (InterPro:IPR000362); Has 10040 Blast hits to 10035 proteins in 1495 species: Archae - 255; Bacteria - 5320; Metazoa - 254; Fungi - 173; Plants - 41; Viruses - 0; Other Eukaryotes - 3997 (source: NCBI BLink).  protein_id AT5G10920.1p  transcript_id AT5G10920.1  protein_id AT5G10920.1p  transcript_id AT5G10920.1  
At5g10930	chr5:003445569	0.0	C/3445569-3446906	AT5G10930.1  CDS  gene_syn CBL-INTERACTING PROTEIN KINASE 5, CIPK5, SNF1-RELATED PROTEIN KINASE 3.24, SnRK3.24, T30N20.200, T30N20_200  gene CIPK5  function Encodes CBL-interacting protein kinase 5 (CIPK5).  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product CIPK5 (CBL-INTERACTING PROTEIN KINASE 5); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note CBL-INTERACTING PROTEIN KINASE 5 (CIPK5); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: signal transduction, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CIPK25 (CBL-INTERACTING PROTEIN KINASE 25); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G25110.1); Has 96216 Blast hits to 94481 proteins in 3201 species: Archae - 76; Bacteria - 8630; Metazoa - 41516; Fungi - 8679; Plants - 18494; Viruses - 477; Other Eukaryotes - 18344 (source: NCBI BLink).  protein_id AT5G10930.1p  transcript_id AT5G10930.1  protein_id AT5G10930.1p  transcript_id AT5G10930.1  
At5g10940	chr5:003454056	0.0	C/3454056-3454127,3453776-3453844,3453623-3453700,3453290-3453424,3453072-3453179,3452867-3452995,3452507-3452622,3452307-3452424,3452076-3452190,3451436-3451575,3451183-3451353,3450983-3451093,3450750-3450861,3449946-3450277,3449695-3449785,3449467-3449562,3449300-3449370,3449079-3449206,3448890-3448971	AT5G10940.1  CDS  gene_syn T30N20.210, T30N20_210  go_component plasma membrane|GO:0005886|17317660|IDA  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G45620.1); Has 14273 Blast hits to 8149 proteins in 372 species: Archae - 8; Bacteria - 2831; Metazoa - 5744; Fungi - 2722; Plants - 1163; Viruses - 0; Other Eukaryotes - 1805 (source: NCBI BLink).  protein_id AT5G10940.1p  transcript_id AT5G10940.1  protein_id AT5G10940.1p  transcript_id AT5G10940.1  
At5g10945	chr5:003456647	0.0	C/3456647-3456732	AT5G10945.1  miRNA  gene_syn MICRORNA 156D, MIR156D  gene MIR156D  function Encodes a microRNA that targets several SPL family members, including SPL3,4, and 5. By regulating the expression of SPL3 (and probably also SPL4 and SPL5), this microRNA regulates vegetative phase change. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGACAGAAGAGAGUGAGCAC  go_component cellular_component|GO:0005575||ND  go_process gene silencing by miRNA|GO:0035195|15200956|TAS  go_function molecular_function|GO:0003674||ND  product MIR156D (MICRORNA 156D); miRNA  transcript_id AT5G10945.1  
At5g10946	chr5:003457124	0.0	C/3457124-3457244,3456210-3456256	AT5G10946.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G10946.1p  transcript_id AT5G10946.1  protein_id AT5G10946.1p  transcript_id AT5G10946.1  
At5g10950	chr5:003461555	0.0	C/3461555-3461632,3461396-3461469,3461257-3461308,3460929-3461024,3460783-3460835,3460438-3460527,3459557-3460301	AT5G10950.1  CDS  gene_syn T30N20.220, T30N20_220  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product cylicin-related  note cylicin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31880.1); Has 53385 Blast hits to 29505 proteins in 1133 species: Archae - 108; Bacteria - 5328; Metazoa - 20730; Fungi - 6690; Plants - 2205; Viruses - 416; Other Eukaryotes - 17908 (source: NCBI BLink).  protein_id AT5G10950.1p  transcript_id AT5G10950.1  protein_id AT5G10950.1p  transcript_id AT5G10950.1  
At5g10960	chr5:003464581	0.0	W/3464581-3465414	AT5G10960.1  CDS  gene_syn T30N20.230, T30N20_230  go_component nucleus|GO:0005634||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process RNA modification|GO:0009451||ISS  go_function ribonuclease activity|GO:0004540||ISS  product CCR4-NOT transcription complex protein, putative  note CCR4-NOT transcription complex protein, putative; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: CCR4-NOT transcription complex protein, putative (TAIR:AT1G80780.2); Has 632 Blast hits to 624 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 218; Fungi - 95; Plants - 219; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).  protein_id AT5G10960.1p  transcript_id AT5G10960.1  protein_id AT5G10960.1p  transcript_id AT5G10960.1  
At5g10970	chr5:003469268	0.0	W/3469268-3470086	AT5G10970.1  CDS  gene_syn T30N20.240, T30N20_240  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: hypocotyl, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: ZFP3 (ZINC FINGER PROTEIN 3); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT5G25160.1); Has 371 Blast hits to 370 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 371; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G10970.1p  transcript_id AT5G10970.1  protein_id AT5G10970.1p  transcript_id AT5G10970.1  
At5g10980	chr5:003473278	0.0	C/3473278-3473349,3472852-3473019,3472591-3472761	AT5G10980.1  CDS  gene_syn T30N20.250, T30N20_250  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product histone H3  note histone H3; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H3.2 (TAIR:AT4G40040.2); Has 10278 Blast hits to 10275 proteins in 5329 species: Archae - 0; Bacteria - 0; Metazoa - 7397; Fungi - 1307; Plants - 999; Viruses - 0; Other Eukaryotes - 575 (source: NCBI BLink).  protein_id AT5G10980.1p  transcript_id AT5G10980.1  protein_id AT5G10980.1p  transcript_id AT5G10980.1  
At5g10990	chr5:003476884	0.0	W/3476884-3477330	AT5G10990.1  CDS  gene_syn T30N20.260, T30N20_260  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT1G75590.1); Has 703 Blast hits to 693 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 702; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G10990.1p  transcript_id AT5G10990.1  protein_id AT5G10990.1p  transcript_id AT5G10990.1  
At5g11000	chr5:003479166	0.0	C/3479166-3480335	AT5G11000.1  CDS  gene_syn T30N20.270, T30N20_270  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF868, plant (InterPro:IPR008586); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25200.1); Has 142 Blast hits to 142 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 142; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G11000.1p  transcript_id AT5G11000.1  protein_id AT5G11000.1p  transcript_id AT5G11000.1  
At5g11010	chr5:003484176	0.0	W/3484176-3484342,3484600-3484697,3484810-3484849,3484930-3485087,3485168-3485351,3485440-3485617,3485700-3485799,3485886-3486067	AT5G11010.2  CDS  gene_syn T30N20.280, T30N20_280  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pre-mRNA cleavage complex-related  note pre-mRNA cleavage complex-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pre-mRNA cleavage complex II Clp1 (InterPro:IPR010655), NUC156 (InterPro:IPR012581); BEST Arabidopsis thaliana protein match is: CLPS3 (CLP-SIMILAR PROTEIN 3); binding (TAIR:AT3G04680.2); Has 423 Blast hits to 419 proteins in 168 species: Archae - 38; Bacteria - 4; Metazoa - 169; Fungi - 96; Plants - 49; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT5G11010.2p  transcript_id AT5G11010.2  protein_id AT5G11010.2p  transcript_id AT5G11010.2  
At5g11010	chr5:003484176	0.0	W/3484176-3484342,3484600-3484697,3484810-3484849,3484930-3485087,3485168-3485351,3485440-3485617,3485700-3485799,3485886-3486067	AT5G11010.3  CDS  gene_syn T30N20.280, T30N20_280  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pre-mRNA cleavage complex-related  note pre-mRNA cleavage complex-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pre-mRNA cleavage complex II Clp1 (InterPro:IPR010655), NUC156 (InterPro:IPR012581); BEST Arabidopsis thaliana protein match is: CLPS3 (CLP-SIMILAR PROTEIN 3); binding (TAIR:AT3G04680.2); Has 423 Blast hits to 419 proteins in 168 species: Archae - 38; Bacteria - 4; Metazoa - 169; Fungi - 96; Plants - 49; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT5G11010.3p  transcript_id AT5G11010.3  protein_id AT5G11010.3p  transcript_id AT5G11010.3  
At5g11010	chr5:003484176	0.0	W/3484176-3484342,3484600-3484697,3484810-3484849,3484930-3485087,3485168-3485351,3485440-3485617,3485700-3485831	AT5G11010.1  CDS  gene_syn T30N20.280, T30N20_280  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pre-mRNA cleavage complex-related  note pre-mRNA cleavage complex-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pre-mRNA cleavage complex II Clp1 (InterPro:IPR010655), NUC156 (InterPro:IPR012581); BEST Arabidopsis thaliana protein match is: CLPS3 (CLP-SIMILAR PROTEIN 3); binding (TAIR:AT3G04680.2); Has 415 Blast hits to 413 proteins in 166 species: Archae - 36; Bacteria - 4; Metazoa - 166; Fungi - 96; Plants - 49; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT5G11010.1p  transcript_id AT5G11010.1  protein_id AT5G11010.1p  transcript_id AT5G11010.1  
At5g11020	chr5:003488848	0.0	C/3488848-3488983,3488224-3488379,3487850-3488106,3487635-3487767,3487488-3487551,3487299-3487395,3487109-3487208,3486863-3486981,3486685-3486774,3486439-3486588	AT5G11020.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT2G25220.1); Has 91338 Blast hits to 90211 proteins in 3274 species: Archae - 52; Bacteria - 8247; Metazoa - 39661; Fungi - 7373; Plants - 19504; Viruses - 518; Other Eukaryotes - 15983 (source: NCBI BLink).  protein_id AT5G11020.1p  transcript_id AT5G11020.1  protein_id AT5G11020.1p  transcript_id AT5G11020.1  
At5g11027	chr5:003490426	0.0	C/3490426-3490542	AT5G11027.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G11027.1p  transcript_id AT5G11027.1  protein_id AT5G11027.1p  transcript_id AT5G11027.1  
At5g11030	chr5:003494986	0.0	C/3494986-3495078,3494650-3494829,3494402-3494551,3494240-3494312,3493749-3493915,3493574-3493633,3493310-3493460,3492888-3493216,3492221-3492298,3491872-3492030,3491427-3491478,3490993-3491225	AT5G11030.3  CDS  gene_syn ABERRANT LATERAL ROOT FORMATION 4, ALF4, T5K6.20, T5K6_20  gene ALF4  function alf4-1 prevents initiation of lateral roots. Cannot be rescued by IAA. Protein belongs to a plant-specific gene family and is localized to the nucleus.  go_component nucleus|GO:0005634|14731255|IDA  go_component cytoplasm|GO:0005737|14731255|IDA  go_process lateral root morphogenesis|GO:0010102||IMP  product ALF4 (ABERRANT LATERAL ROOT FORMATION 4)  note ABERRANT LATERAL ROOT FORMATION 4 (ALF4); INVOLVED IN: lateral root morphogenesis; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages.  protein_id AT5G11030.3p  transcript_id AT5G11030.3  protein_id AT5G11030.3p  transcript_id AT5G11030.3  
At5g11030	chr5:003494986	0.0	C/3494986-3495078,3494650-3494829,3494402-3494551,3494240-3494312,3493749-3493915,3493574-3493633,3493310-3493460,3492888-3493216,3492221-3492298,3491872-3492030,3491427-3491478,3490993-3491237	AT5G11030.1  CDS  gene_syn ABERRANT LATERAL ROOT FORMATION 4, ALF4, T5K6.20, T5K6_20  gene ALF4  function alf4-1 prevents initiation of lateral roots. Cannot be rescued by IAA. Protein belongs to a plant-specific gene family and is localized to the nucleus.  go_component nucleus|GO:0005634|14731255|IDA  go_component cytoplasm|GO:0005737|14731255|IDA  go_process lateral root morphogenesis|GO:0010102||IMP  product ALF4 (ABERRANT LATERAL ROOT FORMATION 4)  note ABERRANT LATERAL ROOT FORMATION 4 (ALF4); INVOLVED IN: lateral root morphogenesis; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 30 Blast hits to 30 proteins in 13 species: Archae - 0; Bacteria - 6; Metazoa - 2; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G11030.1p  transcript_id AT5G11030.1  protein_id AT5G11030.1p  transcript_id AT5G11030.1  
At5g11030	chr5:003494986	0.0	C/3494986-3495078,3494650-3494829,3494402-3494551,3494240-3494312,3493749-3493915,3493574-3493633,3493310-3493460,3492888-3493216,3492733-3492804,3492221-3492298,3491872-3492030,3491427-3491478,3490993-3491237	AT5G11030.2  CDS  gene_syn ABERRANT LATERAL ROOT FORMATION 4, ALF4, T5K6.20, T5K6_20  gene ALF4  function alf4-1 prevents initiation of lateral roots. Cannot be rescued by IAA. Protein belongs to a plant-specific gene family and is localized to the nucleus.  go_component nucleus|GO:0005634|14731255|IDA  go_component cytoplasm|GO:0005737|14731255|IDA  go_process lateral root morphogenesis|GO:0010102||IMP  product ALF4 (ABERRANT LATERAL ROOT FORMATION 4)  note ABERRANT LATERAL ROOT FORMATION 4 (ALF4); INVOLVED IN: lateral root morphogenesis; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages.  protein_id AT5G11030.2p  transcript_id AT5G11030.2  protein_id AT5G11030.2p  transcript_id AT5G11030.2  
At5g11040	chr5:003495332	0.0	W/3495332-3495742,3495935-3496141,3496249-3496431,3496615-3496724,3496798-3496857,3497335-3497623,3497785-3498074,3498377-3499257,3499369-3500274,3500387-3500610	AT5G11040.1  CDS  gene_syn T5K6.30, T5K6_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transport protein Trs120 (InterPro:IPR013935); Has 230 Blast hits to 190 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 128; Fungi - 64; Plants - 15; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT5G11040.1p  transcript_id AT5G11040.1  protein_id AT5G11040.1p  transcript_id AT5G11040.1  
At5g11050	chr5:003502144	0.0	W/3502144-3502484,3502627-3502753,3502832-3503635	AT5G11050.1  CDS  gene_syn AtMYB64, MYB64, T5K6.40, T5K6_40, myb domain protein 64  gene MYB64  function Member of R2R3-MYB transcription factor gene family.  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677|11597504|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product MYB64 (myb domain protein 64); DNA binding / transcription factor  note myb domain protein 64 (MYB64); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB119 (MYB DOMAIN PROTEIN 119); DNA binding / transcription factor (TAIR:AT5G58850.1); Has 7395 Blast hits to 6395 proteins in 395 species: Archae - 0; Bacteria - 42; Metazoa - 1020; Fungi - 475; Plants - 3527; Viruses - 5; Other Eukaryotes - 2326 (source: NCBI BLink).  protein_id AT5G11050.1p  transcript_id AT5G11050.1  protein_id AT5G11050.1p  transcript_id AT5G11050.1  
At5g11060	chr5:003510408	0.0	W/3510408-3510980,3511472-3511592,3511789-3511973,3512308-3512439,3512598-3512734,3512934-3512967	AT5G11060.1  CDS  gene_syn KNAT4, KNOTTED1-LIKE HOMEOBOX GENE 4, T5K6.50, T5K6_50  gene KNAT4  function A member of Class II KN1-like homeodomain transcription factors (together with KNAT3 and KNAT5), with greatest homology to the maize knox1 homeobox protein. Expression regulated by light. Detected in all tissues examined, but most prominent in leaves and young siliques. Transient expression of GFP translational fusion protein suggests bipartite localization in nucleus and cytoplasm. KNAT4 promoter activity showed cell-type specific pattern along longitudinal root axis; GUS expression pattern started at the elongation zone, predominantly in the phloem and pericycle cells, extending to endodermis toward the base of the root.  go_component nucleus|GO:0005634|16463096|IDA  go_component nucleus|GO:0005634||NAS  go_component cytoplasm|GO:0005737||NAS  go_component cytosol|GO:0005829|16463096|IDA  go_process response to light stimulus|GO:0009416|8980519|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|8980519|ISS  product KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE 4); transcription activator/ transcription factor  note KNOTTED1-LIKE HOMEOBOX GENE 4 (KNAT4); FUNCTIONS IN: transcription factor activity, transcription activator activity; INVOLVED IN: response to light stimulus; LOCATED IN: cytosol, nucleus, cytoplasm; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: KNOX2 (InterPro:IPR005541), ELK (InterPro:IPR005539), Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), KNOX1 (InterPro:IPR005540), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3); transcription activator/ transcription factor (TAIR:AT5G25220.1); Has 4977 Blast hits to 4967 proteins in 255 species: Archae - 0; Bacteria - 0; Metazoa - 1745; Fungi - 183; Plants - 2928; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).  protein_id AT5G11060.1p  transcript_id AT5G11060.1  protein_id AT5G11060.1p  transcript_id AT5G11060.1  
At5g11070	chr5:003516440	0.0	C/3516440-3516898	AT5G11070.1  CDS  gene_syn T5K6.60, T5K6_60  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35090.1); Has 22 Blast hits to 22 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G11070.1p  transcript_id AT5G11070.1  protein_id AT5G11070.1p  transcript_id AT5G11070.1  
At5g11080	chr5:003519360	0.0	C/3519360-3519449,3519095-3519215,3518935-3519006,3518835-3518857,3518680-3518739,3518522-3518591,3518314-3518447,3518060-3518224,3517889-3517942,3517649-3517807,3517449-3517559	AT5G11080.1  CDS  gene_syn T5K6.70, T5K6_70  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product ubiquitin family protein  note ubiquitin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25270.1); Has 6126 Blast hits to 2995 proteins in 508 species: Archae - 0; Bacteria - 2; Metazoa - 2717; Fungi - 770; Plants - 1375; Viruses - 114; Other Eukaryotes - 1148 (source: NCBI BLink).  protein_id AT5G11080.1p  transcript_id AT5G11080.1  protein_id AT5G11080.1p  transcript_id AT5G11080.1  
At5g11090	chr5:003524796	0.0	W/3524796-3525449	AT5G11090.1  CDS  gene_syn T5K6.80, T5K6_80  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product serine-rich protein-related  note serine-rich protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: serine-rich protein-related (TAIR:AT5G25280.2); Has 1617 Blast hits to 241 proteins in 57 species: Archae - 0; Bacteria - 4; Metazoa - 631; Fungi - 53; Plants - 88; Viruses - 0; Other Eukaryotes - 841 (source: NCBI BLink).  protein_id AT5G11090.1p  transcript_id AT5G11090.1  protein_id AT5G11090.1p  transcript_id AT5G11090.1  
At5g11100	chr5:003532402	0.0	W/3532402-3532506,3532594-3532697,3532791-3532841,3532942-3533062,3533370-3533497,3533577-3533678,3533753-3533827,3533917-3533996,3534072-3534222,3534317-3534547,3534661-3535221	AT5G11100.1  CDS  gene_syn ATSYTD, NTMC2T2.2, NTMC2TYPE2.2, SYTD, T5K6.90, T5K6_90  gene SYTD  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SYTD  note SYTD; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: NTMC2T2.1 (TAIR:AT1G05500.1); Has 9639 Blast hits to 5197 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 6547; Fungi - 1013; Plants - 1307; Viruses - 0; Other Eukaryotes - 772 (source: NCBI BLink).  protein_id AT5G11100.1p  transcript_id AT5G11100.1  protein_id AT5G11100.1p  transcript_id AT5G11100.1  
At5g11110	chr5:003536426	0.0	W/3536426-3536632,3536723-3536812,3536937-3537181,3537272-3537335,3537423-3538115,3538225-3538329,3538446-3538577,3538680-3538856,3539089-3539142,3539222-3539284,3539378-3540283,3540388-3540515,3540622-3540901	AT5G11110.1  CDS  gene_syn ATSPS2F, KAONASHI 2, KNS2, SPS1, SUCROSE PHOSPHATE SYNTHASE 1, SUCROSE PHOSPHATE SYNTHASE 2F, T5K6.100, T5K6_100  gene ATSPS2F  function Encodes a protein with putative sucrose-phosphate synthase activity.Involved in pollen exine formation.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process sucrose metabolic process|GO:0005985||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function sucrose-phosphate synthase activity|GO:0046524|16876912|RCA  product ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F); sucrose-phosphate synthase  note SUCROSE PHOSPHATE SYNTHASE 2F (ATSPS2F); FUNCTIONS IN: sucrose-phosphate synthase activity; INVOLVED IN: biosynthetic process, sucrose metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sucrose-6F-phosphate phosphohydrolase, plant and cyanobacteria (InterPro:IPR006380), Sucrose phosphate synthase, plant (InterPro:IPR012819), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: ATSPS1F (sucrose phosphate synthase 1F); sucrose-phosphate synthase/ transferase, transferring glycosyl groups (TAIR:AT5G20280.1); Has 4529 Blast hits to 4442 proteins in 773 species: Archae - 192; Bacteria - 2676; Metazoa - 6; Fungi - 42; Plants - 474; Viruses - 0; Other Eukaryotes - 1139 (source: NCBI BLink).  protein_id AT5G11110.1p  transcript_id AT5G11110.1  protein_id AT5G11110.1p  transcript_id AT5G11110.1  
At5g11120	chr5:003542320	0.0	W/3542320-3542541,3542724-3542990	AT5G11120.1  CDS  gene_syn T5K6.11  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G11120.1p  transcript_id AT5G11120.1  protein_id AT5G11120.1p  transcript_id AT5G11120.1  
At5g11130	chr5:003543622	0.0	W/3543622-3543963,3544056-3544724	AT5G11130.1  CDS  gene_syn T5K6.3  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_function catalytic activity|GO:0003824||ISS  product exostosin family protein  note exostosin family protein; FUNCTIONS IN: catalytic activity; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: catalytic (TAIR:AT5G20260.1); Has 965 Blast hits to 963 proteins in 88 species: Archae - 0; Bacteria - 8; Metazoa - 344; Fungi - 4; Plants - 506; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).  protein_id AT5G11130.1p  transcript_id AT5G11130.1  protein_id AT5G11130.1p  transcript_id AT5G11130.1  
At5g11140	chr5:003545343	0.0	W/3545343-3546068	AT5G11140.1  CDS  gene_syn F2I11.30, F2I11_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38560.1); Has 72 Blast hits to 72 proteins in 9 species: Archae - 0; Bacteria - 7; Metazoa - 1; Fungi - 6; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G11140.1p  transcript_id AT5G11140.1  protein_id AT5G11140.1p  transcript_id AT5G11140.1  
At5g11150	chr5:003547625	0.0	C/3547625-3547844,3547232-3547422,3546911-3547074,3546625-3546715	AT5G11150.1  CDS  gene_syn ATVAMP713, F2I11.40, F2I11_40, VAMP713, VESICLE-ASSOCIATED MEMBRANE PROTEIN 713  gene ATVAMP713  function Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family.  go_component vacuole|GO:0005773|14760709|IDA  go_component vacuolar membrane|GO:0005774|15876431|TAS  go_component membrane|GO:0016020||ISS  go_process response to salt stress|GO:0009651|17101982|IMP  go_function molecular_function|GO:0003674||ND  product ATVAMP713 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 713)  note VESICLE-ASSOCIATED MEMBRANE PROTEIN 713 (ATVAMP713); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: vacuolar membrane, vacuole, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: ATVAMP711 (ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 711) (TAIR:AT4G32150.1); Has 1811 Blast hits to 1810 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 817; Fungi - 334; Plants - 339; Viruses - 0; Other Eukaryotes - 321 (source: NCBI BLink).  protein_id AT5G11150.1p  transcript_id AT5G11150.1  protein_id AT5G11150.1p  transcript_id AT5G11150.1  
At5g11160	chr5:003550774	0.0	W/3550774-3550864,3550945-3551055,3551284-3551376,3551462-3551611,3551703-3551761,3551915-3551986	AT5G11160.1  CDS  gene_syn APT5, Adenine phosphoribosyltransferase 5, F2I11.50, F2I11_50  gene APT5  go_process adenine salvage|GO:0006168||IEA  go_process anaerobic respiration|GO:0009061||IEA  go_process nucleoside metabolic process|GO:0009116||IEA  go_process nucleotide metabolic process|GO:0009117||IEA  go_component cellular_component|GO:0005575||ND  go_function adenine phosphoribosyltransferase activity|GO:0003999||ISS  product APT5 (Adenine phosphoribosyltransferase 5); adenine phosphoribosyltransferase  note Adenine phosphoribosyltransferase 5 (APT5); FUNCTIONS IN: adenine phosphoribosyltransferase activity; INVOLVED IN: nucleoside metabolic process, adenine salvage, anaerobic respiration, nucleotide metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adenine phosphoribosyl transferase (InterPro:IPR005764), Phosphoribosyltransferase (InterPro:IPR000836); BEST Arabidopsis thaliana protein match is: APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2); adenine phosphoribosyltransferase/ phosphate transmembrane transporter (TAIR:AT1G80050.1); Has 5467 Blast hits to 5467 proteins in 1372 species: Archae - 154; Bacteria - 2846; Metazoa - 143; Fungi - 131; Plants - 101; Viruses - 0; Other Eukaryotes - 2092 (source: NCBI BLink).  protein_id AT5G11160.1p  transcript_id AT5G11160.1  protein_id AT5G11160.1p  transcript_id AT5G11160.1  
At5g11170	chr5:003553334	0.0	W/3553334-3553446,3553679-3553779,3554237-3554409,3554509-3554740,3554821-3554939,3555624-3555680,3555773-3555957,3556066-3556210,3556301-3556384,3556479-3556542,3556636-3556646	AT5G11170.1  CDS  gene_syn F2I11.60, F2I11_60  go_component nucleolus|GO:0005730|15496452|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process response to cadmium ion|GO:0046686|17075075|IEP  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function ATP-dependent helicase activity|GO:0008026||ISS  product ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding  note ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: nucleolus; EXPRESSED IN: guard cell, root, cultured cell; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (TAIR:AT5G11200.1); Has 28546 Blast hits to 28139 proteins in 1749 species: Archae - 514; Bacteria - 11832; Metazoa - 5046; Fungi - 3322; Plants - 1384; Viruses - 50; Other Eukaryotes - 6398 (source: NCBI BLink).  protein_id AT5G11170.1p  transcript_id AT5G11170.1  protein_id AT5G11170.1p  transcript_id AT5G11170.1  
At5g11170	chr5:003554272	0.0	W/3554272-3554409,3554509-3554740,3554821-3554939,3555624-3555680,3555773-3555957,3556066-3556210,3556301-3556384,3556479-3556542,3556636-3556646	AT5G11170.2  CDS  gene_syn F2I11.60, F2I11_60  go_component nucleolus|GO:0005730|15496452|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process response to cadmium ion|GO:0046686|17075075|IEP  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function ATP-dependent helicase activity|GO:0008026||ISS  product ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding  note ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding; INVOLVED IN: response to cadmium ion; LOCATED IN: nucleolus; EXPRESSED IN: guard cell, root, cultured cell; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (TAIR:AT5G11200.1); Has 28016 Blast hits to 27720 proteins in 1740 species: Archae - 501; Bacteria - 11738; Metazoa - 4978; Fungi - 3319; Plants - 1370; Viruses - 50; Other Eukaryotes - 6060 (source: NCBI BLink).  protein_id AT5G11170.2p  transcript_id AT5G11170.2  protein_id AT5G11170.2p  transcript_id AT5G11170.2  
At5g11180	chr5:003561302	0.0	C/3561302-3561575,3558996-3560329,3558678-3558884,3558052-3558384,3557261-3557833	AT5G11180.1  CDS  gene_syn ATGLR2.6, F2I11.70, F2I11_70, GLR2.6, GLUTAMATE RECEPTOR 2.6  gene ATGLR2.6  function member of Putative ligand-gated ion channel subunit family  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process cellular calcium ion homeostasis|GO:0006874|11379626|NAS  go_process response to light stimulus|GO:0009416|11379626|NAS  go_function intracellular ligand-gated ion channel activity|GO:0005217||ISS  product ATGLR2.6; intracellular ligand-gated ion channel  note ATGLR2.6; FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: ATGLR2.5; intracellular ligand-gated ion channel (TAIR:AT5G11210.1); Has 4032 Blast hits to 3256 proteins in 221 species: Archae - 22; Bacteria - 212; Metazoa - 3317; Fungi - 0; Plants - 367; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).  protein_id AT5G11180.1p  transcript_id AT5G11180.1  protein_id AT5G11180.1p  transcript_id AT5G11180.1  
At5g11190	chr5:003564976	0.0	W/3564976-3565055,3565562-3566051	AT5G11190.1  CDS  gene_syn F2I11.80, F2I11_80, SHN3, shine3  gene SHN3  function encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.  go_component mitochondrion|GO:0005739||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product SHN3 (shine3); DNA binding / transcription factor  note shine3 (SHN3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: anther dehiscence zone, fruit dehiscence zone; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: SHN2 (shine2); DNA binding / transcription factor (TAIR:AT5G25390.2); Has 3920 Blast hits to 3704 proteins in 201 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 3912; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G11190.1p  transcript_id AT5G11190.1  protein_id AT5G11190.1p  transcript_id AT5G11190.1  
At5g11200	chr5:003567389	0.0	W/3567389-3567501,3567719-3567819,3568278-3568450,3568554-3568785,3568865-3568983,3569153-3569195,3569315-3569350,3569476-3569573,3569670-3569726,3569820-3570004,3570110-3570254,3570341-3570424,3570520-3570583,3570676-3570686	AT5G11200.2  CDS  gene_syn F2I11.90, F2I11_90  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_process biological_process|GO:0008150||ND  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD/DEAH box helicase, putative  note DEAD/DEAH box helicase, putative; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: male gametophyte, guard cell, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding (TAIR:AT5G11170.1).  protein_id AT5G11200.2p  transcript_id AT5G11200.2  protein_id AT5G11200.2p  transcript_id AT5G11200.2  
At5g11200	chr5:003567389	0.0	W/3567389-3567501,3567719-3567819,3568278-3568450,3568554-3568785,3568865-3568983,3569315-3569350,3569435-3569521,3569670-3569726,3569820-3570004,3570110-3570254,3570341-3570424,3570520-3570583,3570676-3570686	AT5G11200.3  CDS  gene_syn F2I11.90, F2I11_90  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_process biological_process|GO:0008150||ND  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD/DEAH box helicase, putative  note DEAD/DEAH box helicase, putative; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: male gametophyte, guard cell, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding (TAIR:AT5G11170.1).  protein_id AT5G11200.3p  transcript_id AT5G11200.3  protein_id AT5G11200.3p  transcript_id AT5G11200.3  
At5g11200	chr5:003567389	0.0	W/3567389-3567501,3567719-3567819,3568278-3568450,3568554-3568785,3568865-3568983,3569670-3569726,3569820-3570004,3570110-3570254,3570341-3570424,3570520-3570583,3570676-3570686	AT5G11200.1  CDS  gene_syn F2I11.90, F2I11_90  go_component cell wall|GO:0005618|16287169|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_process biological_process|GO:0008150||ND  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD/DEAH box helicase, putative  note DEAD/DEAH box helicase, putative; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: male gametophyte, guard cell, pollen tube, seed, leaf; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding (TAIR:AT5G11170.1); Has 28546 Blast hits to 28139 proteins in 1749 species: Archae - 514; Bacteria - 11832; Metazoa - 5046; Fungi - 3322; Plants - 1384; Viruses - 50; Other Eukaryotes - 6398 (source: NCBI BLink).  protein_id AT5G11200.1p  transcript_id AT5G11200.1  protein_id AT5G11200.1p  transcript_id AT5G11200.1  
At5g11210	chr5:003574466	0.0	C/3574466-3574537,3572887-3574188,3572380-3572695,3571870-3572276,3571309-3571668,3571214-3571246	AT5G11210.1  CDS  gene_syn ATGLR2.5, F2I11.100, F2I11_100, GLR2.5, GLUTAMATE RECEPTOR 2.5  gene ATGLR2.5  function member of Putative ligand-gated ion channel subunit family  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process cellular calcium ion homeostasis|GO:0006874|11379626|NAS  go_process response to light stimulus|GO:0009416|11379626|NAS  go_function intracellular ligand-gated ion channel activity|GO:0005217||ISS  product ATGLR2.5; intracellular ligand-gated ion channel  note ATGLR2.5; FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), GPCR, family 3 (InterPro:IPR000337), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: ATGLR2.6; intracellular ligand-gated ion channel (TAIR:AT5G11180.1); Has 3711 Blast hits to 3626 proteins in 230 species: Archae - 34; Bacteria - 213; Metazoa - 3042; Fungi - 0; Plants - 307; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).  protein_id AT5G11210.1p  transcript_id AT5G11210.1  protein_id AT5G11210.1p  transcript_id AT5G11210.1  
At5g11220	chr5:003577057	0.0	W/3577057-3577854	AT5G11220.1  CDS  gene_syn F2I11.110, F2I11_110  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64870.1); Has 44 Blast hits to 41 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G11220.1p  transcript_id AT5G11220.1  protein_id AT5G11220.1p  transcript_id AT5G11220.1  
At5g11225	chr5:003578295	0.0	C/3578295-3578366	AT5G11225.1  tRNA  gene_syn 67612.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: TCC)  transcript_id AT5G11225.1  
At5g11230	chr5:003580562	0.0	W/3580562-3581617	AT5G11230.1  CDS  gene_syn F2I11.120, F2I11_120  go_component endomembrane system|GO:0012505||IEA  go_function organic anion transmembrane transporter activity|GO:0008514||ISS  product organic anion transmembrane transporter  note organic anion transmembrane transporter; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: phosphate translocator-related (TAIR:AT5G25400.1); Has 1509 Blast hits to 1509 proteins in 182 species: Archae - 2; Bacteria - 4; Metazoa - 379; Fungi - 270; Plants - 687; Viruses - 0; Other Eukaryotes - 167 (source: NCBI BLink).  protein_id AT5G11230.1p  transcript_id AT5G11230.1  protein_id AT5G11230.1p  transcript_id AT5G11230.1  
At5g11240	chr5:003582949	0.0	W/3582949-3583038,3583338-3583481,3583585-3583700,3583904-3584058,3584224-3584312,3584427-3584964,3585347-3585481,3585625-3585761,3585884-3585963,3586166-3586280,3586362-3586436,3586523-3586673,3586760-3586782	AT5G11240.1  CDS  gene_syn F2I11.130, F2I11_130  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Protein of unknown function NUC189, C-terminal (InterPro:IPR012979), WD40 repeat, region (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); Has 6246 Blast hits to 3792 proteins in 274 species: Archae - 28; Bacteria - 2331; Metazoa - 1477; Fungi - 1133; Plants - 291; Viruses - 0; Other Eukaryotes - 986 (source: NCBI BLink).  protein_id AT5G11240.1p  transcript_id AT5G11240.1  protein_id AT5G11240.1p  transcript_id AT5G11240.1  
At5g11242	chr5:003587252	0.0	C/3587252-3587928	AT5G11242.1  pseudogenic_transcript  pseudo  function pseudogene of ribosomal protein  
At5g11250	chr5:003591344	0.0	C/3591344-3591960,3590081-3591194,3589707-3589994,3587978-3589528	AT5G11250.1  CDS  gene_syn F2I11.140, F2I11_140  go_component chloroplast|GO:0009507||IEA  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, protein binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT2G14080.1); Has 34948 Blast hits to 17745 proteins in 669 species: Archae - 26; Bacteria - 1788; Metazoa - 4553; Fungi - 258; Plants - 25997; Viruses - 17; Other Eukaryotes - 2309 (source: NCBI BLink).  protein_id AT5G11250.1p  transcript_id AT5G11250.1  protein_id AT5G11250.1p  transcript_id AT5G11250.1  
At5g11260	chr5:003594704	0.0	C/3594704-3594800,3594290-3594473,3594023-3594179,3593583-3593651	AT5G11260.1  CDS  gene_syn BZIP TRANSCRIPTION FACTOR HY5, ELONGATED HYPOCOTYL 5, F2I11.150, F2I11_150, HY5, REVERSAL OF THE DET PHENOTYPE 5, TED 5  gene HY5  function Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene s promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression.  go_component nucleus|GO:0005634|16829591|IDA  go_component nucleus|GO:0005634|9367981|IDA  go_component nucleus|GO:0005634|9596629|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|11019812|TAS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process photomorphogenesis|GO:0009640|10990463|TAS  go_process photomorphogenesis|GO:0009640|11145879|TAS  go_process response to abscisic acid stimulus|GO:0009737|18332440|IMP  go_process gibberellic acid mediated signaling|GO:0009740|18053005|IMP  go_process positive regulation of flavonoid biosynthetic process|GO:0009963|16829591|IMP  go_process red or far red light signaling pathway|GO:0010017|16891401|IMP  go_process regulation of photomorphogenesis|GO:0010099|18053005|IMP  go_process response to red light|GO:0010114|17076805|IEP  go_process response to far red light|GO:0010218|17076805|IEP  go_process response to UV-B|GO:0010224|14739338|IGI  go_process response to UV-B|GO:0010224|16829591|IMP  go_process response to UV-B|GO:0010224|18266923|IEP  go_process positive regulation of anthocyanin metabolic process|GO:0031539|17319847|IMP  go_process anthocyanin metabolic process|GO:0046283|17217468|IMP  go_function DNA binding|GO:0003677|17319847|IDA  go_function DNA binding|GO:0003677|9596629|IDA  go_function double-stranded DNA binding|GO:0003690|18332440|IPI  go_function transcription factor activity|GO:0003700|11019812|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  product HY5 (ELONGATED HYPOCOTYL 5); DNA binding / double-stranded DNA binding / transcription factor  note ELONGATED HYPOCOTYL 5 (HY5); FUNCTIONS IN: double-stranded DNA binding, transcription factor activity, DNA binding; INVOLVED IN: in 12 processes; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616), cAMP response element binding (CREB) protein (InterPro:IPR001630); BEST Arabidopsis thaliana protein match is: HYH (HY5-HOMOLOG); DNA binding / transcription factor (TAIR:AT3G17609.2); Has 3141 Blast hits to 3137 proteins in 229 species: Archae - 2; Bacteria - 5; Metazoa - 1753; Fungi - 374; Plants - 840; Viruses - 1; Other Eukaryotes - 166 (source: NCBI BLink).  protein_id AT5G11260.1p  transcript_id AT5G11260.1  protein_id AT5G11260.1p  transcript_id AT5G11260.1  
At5g11270	chr5:003596837	0.0	C/3596837-3597076,3596272-3596649,3595777-3596094,3595557-3595685	AT5G11270.1  CDS  gene_syn F2I11.160, F2I11_160, OCP3, OVEREXPRESSOR OF CATIONIC PEROXIDASE 3  gene OCP3  function Encodes a homeodomain transcription factor involved in mediating resistance to infection by necrotrophic pathogens dependent on perception of jasmonic acid through COI1. Expressed in the nucleus. Downregulated upon fungal infection. Also involved in drought tolerance.  go_component nucleus|GO:0005634|15923348|IDA  go_process defense response|GO:0006952|15923348|IMP  go_process response to water deprivation|GO:0009414|19175769|IMP  go_process response to abscisic acid stimulus|GO:0009737|19175769|IEP  go_process jasmonic acid mediated signaling pathway|GO:0009867|15923348|IMP  go_process stomatal movement|GO:0010118|19175769|IMP  go_process defense response to fungus|GO:0050832|19175769|IMP  go_function transcription factor activity|GO:0003700|15923348|ISS  product OCP3 (OVEREXPRESSOR OF CATIONIC PEROXIDASE 3); transcription factor  note OVEREXPRESSOR OF CATIONIC PEROXIDASE 3 (OCP3); FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); Has 7579 Blast hits to 5244 proteins in 389 species: Archae - 11; Bacteria - 1366; Metazoa - 1670; Fungi - 1319; Plants - 595; Viruses - 159; Other Eukaryotes - 2459 (source: NCBI BLink).  protein_id AT5G11270.1p  transcript_id AT5G11270.1  protein_id AT5G11270.1p  transcript_id AT5G11270.1  
At5g11280	chr5:003597321	0.0	W/3597321-3597421,3597735-3597966,3598051-3598347	AT5G11280.1  CDS  gene_syn F2I11.170, F2I11_170  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80200.1); Has 21 Blast hits to 21 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G11280.1p  transcript_id AT5G11280.1  protein_id AT5G11280.1p  transcript_id AT5G11280.1  
At5g11290	chr5:003599166	0.0	W/3599166-3600227	AT5G11290.1  CDS  gene_syn F2I11.180, F2I11_180  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31980.1); Has 428 Blast hits to 408 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 428; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G11290.1p  transcript_id AT5G11290.1  protein_id AT5G11290.1p  transcript_id AT5G11290.1  
At5g11300	chr5:003604311	0.0	C/3604311-3604466,3604141-3604227,3603841-3604027,3603493-3603614,3603278-3603370,3602977-3603110,3602733-3602808,3602567-3602643,3602437-3602470,3602194-3602343,3601970-3602104,3601811-3601870	AT5G11300.1  CDS  gene_syn CYC2BAT, CYC3B, CYCA2;2, CYCLIN, CYCLIN A2;2, MITOTIC-LIKE CYCLIN 3B FROM ARABIDOPSIS  gene CYC3B  function mitotic-like cyclin, core cell cycle gene that is expressed only in roots (RT_PCR), portions with mitotic activity only (whole mount in situ).  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase regulator activity|GO:0016538||ISS  product CYC3B (MITOTIC-LIKE CYCLIN 3B FROM ARABIDOPSIS); cyclin-dependent protein kinase regulator  note MITOTIC-LIKE CYCLIN 3B FROM ARABIDOPSIS (CYC3B); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin (InterPro:IPR006670), G2/mitotic-specific cyclin A (InterPro:IPR015453), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400); BEST Arabidopsis thaliana protein match is: CYCA2;1 (cyclin a2;1); cyclin-dependent protein kinase regulator (TAIR:AT5G25380.1); Has 3411 Blast hits to 3408 proteins in 299 species: Archae - 0; Bacteria - 0; Metazoa - 1748; Fungi - 377; Plants - 760; Viruses - 38; Other Eukaryotes - 488 (source: NCBI BLink).  protein_id AT5G11300.1p  transcript_id AT5G11300.1  protein_id AT5G11300.1p  transcript_id AT5G11300.1  
At5g11310	chr5:003606490	0.0	W/3606490-3607048,3607160-3608409	AT5G11310.1  CDS  gene_syn F2I11.200, F2I11_200  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G71060.1); Has 14185 Blast hits to 4995 proteins in 160 species: Archae - 2; Bacteria - 10; Metazoa - 357; Fungi - 239; Plants - 13041; Viruses - 0; Other Eukaryotes - 536 (source: NCBI BLink).  protein_id AT5G11310.1p  transcript_id AT5G11310.1  protein_id AT5G11310.1p  transcript_id AT5G11310.1  
At5g11320	chr5:003612735	0.0	C/3612735-3613361,3612400-3612648,3612057-3612254	AT5G11320.2  CDS  gene_syn F2I11.210, F2I11_210, YUC4, YUCCA4  gene YUC4  function Belongs to the YUC gene family. Encodes a predicted flavin monooxygenase YUC4 involved in auxin biosynthesis and plant development.  go_function oxidoreductase activity|GO:0016491||IEA  go_process anatomical structure morphogenesis|GO:0009653|17704214|IGI  go_process auxin biosynthetic process|GO:0009851|16818609|IMP  go_process positive regulation of flower development|GO:0009911|18000043|IGI  go_process inflorescence development|GO:0010229|18000043|IGI  go_process leaf development|GO:0048366|17704214|IGI  go_process cotyledon development|GO:0048825|18000043|IGI  go_process phyllome development|GO:0048827|18000043|IGI  go_function monooxygenase activity|GO:0004497||ISS  product YUC4 (YUCCA4); monooxygenase/ oxidoreductase  note YUCCA4 (YUC4); FUNCTIONS IN: oxidoreductase activity, monooxygenase activity; INVOLVED IN: in 7 processes; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027); BEST Arabidopsis thaliana protein match is: YUC1 (YUCCA 1); FAD binding / NADP or NADPH binding / flavin-containing monooxygenase/ oxidoreductase (TAIR:AT4G32540.1); Has 8129 Blast hits to 8120 proteins in 1066 species: Archae - 43; Bacteria - 4029; Metazoa - 664; Fungi - 998; Plants - 358; Viruses - 0; Other Eukaryotes - 2037 (source: NCBI BLink).  protein_id AT5G11320.2p  transcript_id AT5G11320.2  protein_id AT5G11320.2p  transcript_id AT5G11320.2  
At5g11320	chr5:003612735	0.0	C/3612735-3613361,3612400-3612648,3612132-3612254,3611429-3611665	AT5G11320.1  CDS  gene_syn F2I11.210, F2I11_210, YUC4, YUCCA4  gene YUC4  function Belongs to the YUC gene family. Encodes a predicted flavin monooxygenase YUC4 involved in auxin biosynthesis and plant development.  go_function oxidoreductase activity|GO:0016491||IEA  go_process anatomical structure morphogenesis|GO:0009653|17704214|IGI  go_process auxin biosynthetic process|GO:0009851|16818609|IMP  go_process positive regulation of flower development|GO:0009911|18000043|IGI  go_process inflorescence development|GO:0010229|18000043|IGI  go_process leaf development|GO:0048366|17704214|IGI  go_process cotyledon development|GO:0048825|18000043|IGI  go_process phyllome development|GO:0048827|18000043|IGI  go_function monooxygenase activity|GO:0004497||ISS  product YUC4 (YUCCA4); monooxygenase/ oxidoreductase  note YUCCA4 (YUC4); FUNCTIONS IN: oxidoreductase activity, monooxygenase activity; INVOLVED IN: in 7 processes; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027); BEST Arabidopsis thaliana protein match is: YUC1 (YUCCA 1); FAD binding / NADP or NADPH binding / flavin-containing monooxygenase/ oxidoreductase (TAIR:AT4G32540.1); Has 8141 Blast hits to 8130 proteins in 1066 species: Archae - 43; Bacteria - 4033; Metazoa - 664; Fungi - 1002; Plants - 359; Viruses - 0; Other Eukaryotes - 2040 (source: NCBI BLink).  protein_id AT5G11320.1p  transcript_id AT5G11320.1  protein_id AT5G11320.1p  transcript_id AT5G11320.1  
At5g11325	chr5:003617058	0.0	W/3617058-3617129	AT5G11325.1  tRNA  gene_syn 67612.TRNA-GLY-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: TCC)  transcript_id AT5G11325.1  
At5g11330	chr5:003618619	0.0	C/3618619-3618861,3618206-3618510,3617909-3618119,3617342-3617809	AT5G11330.1  CDS  gene_syn F2I11.220, F2I11_220  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product monooxygenase family protein  note monooxygenase family protein; FUNCTIONS IN: oxidoreductase activity, monooxygenase activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Aromatic-ring hydroxylase-like (InterPro:IPR003042), Monooxygenase, FAD-binding (InterPro:IPR002938); BEST Arabidopsis thaliana protein match is: CTF2B; monooxygenase/ oxidoreductase (TAIR:AT2G29720.1); Has 2280 Blast hits to 2280 proteins in 460 species: Archae - 2; Bacteria - 1124; Metazoa - 4; Fungi - 594; Plants - 114; Viruses - 0; Other Eukaryotes - 442 (source: NCBI BLink).  protein_id AT5G11330.1p  transcript_id AT5G11330.1  protein_id AT5G11330.1p  transcript_id AT5G11330.1  
At5g11340	chr5:003619226	0.0	W/3619226-3619379,3620390-3620512,3620851-3621068	AT5G11340.1  CDS  gene_syn F2I11.230, F2I11_230  go_process metabolic process|GO:0008152||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product GCN5-related N-acetyltransferase (GNAT) family protein  note GCN5-related N-acetyltransferase (GNAT) family protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: GCN5-related N-acetyltransferase (GNAT) family protein (TAIR:AT5G16800.2); Has 2784 Blast hits to 2784 proteins in 681 species: Archae - 121; Bacteria - 1284; Metazoa - 435; Fungi - 175; Plants - 77; Viruses - 0; Other Eukaryotes - 692 (source: NCBI BLink).  protein_id AT5G11340.1p  transcript_id AT5G11340.1  protein_id AT5G11340.1p  transcript_id AT5G11340.1  
At5g11350	chr5:003621583	0.0	W/3621583-3621684,3621771-3622209,3622278-3622444,3622593-3622658,3622793-3622845,3622919-3623000,3623078-3623127,3623282-3623363,3623577-3623669,3623756-3623788,3623875-3623963,3624106-3624868,3624962-3625047,3625163-3625247,3625338-3625412	AT5G11350.1  CDS  gene_syn F2I11.240, F2I11_240  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product endonuclease/exonuclease/phosphatase family protein  note endonuclease/exonuclease/phosphatase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein (TAIR:AT1G73875.1); Has 1756 Blast hits to 1474 proteins in 207 species: Archae - 0; Bacteria - 54; Metazoa - 565; Fungi - 336; Plants - 532; Viruses - 4; Other Eukaryotes - 265 (source: NCBI BLink).  protein_id AT5G11350.1p  transcript_id AT5G11350.1  protein_id AT5G11350.1p  transcript_id AT5G11350.1  
At5g11360	chr5:003626526	0.0	C/3626526-3626604,3626203-3626432,3625836-3626114	AT5G11360.3  CDS  gene_syn F2I11.250, F2I11_250  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: protein kinase-related (TAIR:AT5G11400.1).  protein_id AT5G11360.3p  transcript_id AT5G11360.3  protein_id AT5G11360.3p  transcript_id AT5G11360.3  
At5g11360	chr5:003626526	0.0	C/3626526-3626604,3626203-3626435,3625836-3626087	AT5G11360.2  CDS  gene_syn F2I11.250, F2I11_250  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase-related (TAIR:AT5G11400.1); Has 527 Blast hits to 446 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 527; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G11360.2p  transcript_id AT5G11360.2  protein_id AT5G11360.2p  transcript_id AT5G11360.2  
At5g11360	chr5:003626526	0.0	C/3626526-3626604,3626203-3626435,3625836-3626114	AT5G11360.1  CDS  gene_syn F2I11.250, F2I11_250  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: protein kinase-related (TAIR:AT5G11400.1); Has 1596 Blast hits to 1484 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1596; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G11360.1p  transcript_id AT5G11360.1  protein_id AT5G11360.1p  transcript_id AT5G11360.1  
At5g11370	chr5:003627849	0.0	W/3627849-3627952,3628213-3628509,3628604-3628751,3628819-3628899,3629412-3629717	AT5G11370.1  CDS  gene_syn F2I11.260, F2I11_260  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G56410.1); Has 303 Blast hits to 290 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 303; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G11370.1p  transcript_id AT5G11370.1  protein_id AT5G11370.1p  transcript_id AT5G11370.1  
At5g11380	chr5:003630172	0.0	W/3630172-3630324,3630479-3630604,3630693-3630860,3630974-3631121,3631263-3631531,3631677-3631944,3632029-3632285,3632375-3632653,3632733-3632762	AT5G11380.2  CDS  gene_syn 1-deoxy-D-xylulose 5-phosphate synthase 3, DXPS3, F2I11.270, F2I11_270  gene DXPS3  function Encodes a protein postulated to have 1-deoxy-D-xylulose 5-phosphate synthase activity.  go_process terpenoid biosynthetic process|GO:0016114||ISS  go_function 1-deoxy-D-xylulose-5-phosphate synthase activity|GO:0008661|12777052|TAS  go_function 1-deoxy-D-xylulose-5-phosphate synthase activity|GO:0008661||ISS  product DXPS3 (1-deoxy-D-xylulose 5-phosphate synthase 3); 1-deoxy-D-xylulose-5-phosphate synthase  note 1-deoxy-D-xylulose 5-phosphate synthase 3 (DXPS3); FUNCTIONS IN: 1-deoxy-D-xylulose-5-phosphate synthase activity; INVOLVED IN: terpenoid biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, central region (InterPro:IPR005475); BEST Arabidopsis thaliana protein match is: CLA1 (CLOROPLASTOS ALTERADOS 1); 1-deoxy-D-xylulose-5-phosphate synthase (TAIR:AT4G15560.1); Has 8342 Blast hits to 8322 proteins in 1347 species: Archae - 66; Bacteria - 3511; Metazoa - 217; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 4428 (source: NCBI BLink).  protein_id AT5G11380.2p  transcript_id AT5G11380.2  protein_id AT5G11380.2p  transcript_id AT5G11380.2  
At5g11380	chr5:003630172	0.0	W/3630172-3630324,3630479-3630604,3630693-3630860,3630974-3631121,3631263-3631531,3631677-3631944,3632029-3632285,3632375-3632653,3632738-3633022,3633101-3633250	AT5G11380.1  CDS  gene_syn 1-deoxy-D-xylulose 5-phosphate synthase 3, DXPS3, F2I11.270, F2I11_270  gene DXPS3  function Encodes a protein postulated to have 1-deoxy-D-xylulose 5-phosphate synthase activity.  go_process metabolic process|GO:0008152||IEA  go_process terpenoid biosynthetic process|GO:0016114||IEA  go_process terpenoid biosynthetic process|GO:0016114||ISS  go_function 1-deoxy-D-xylulose-5-phosphate synthase activity|GO:0008661|12777052|TAS  go_function 1-deoxy-D-xylulose-5-phosphate synthase activity|GO:0008661||ISS  product DXPS3 (1-deoxy-D-xylulose 5-phosphate synthase 3); 1-deoxy-D-xylulose-5-phosphate synthase  note 1-deoxy-D-xylulose 5-phosphate synthase 3 (DXPS3); FUNCTIONS IN: 1-deoxy-D-xylulose-5-phosphate synthase activity; INVOLVED IN: metabolic process, terpenoid biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, C-terminal (InterPro:IPR005476), Deoxyxylulose-5-phosphate synthase (InterPro:IPR005477), Transketolase C-terminal-like (InterPro:IPR015941), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase, central region (InterPro:IPR005475); BEST Arabidopsis thaliana protein match is: CLA1 (CLOROPLASTOS ALTERADOS 1); 1-deoxy-D-xylulose-5-phosphate synthase (TAIR:AT4G15560.1); Has 12927 Blast hits to 12905 proteins in 1619 species: Archae - 103; Bacteria - 5914; Metazoa - 417; Fungi - 83; Plants - 206; Viruses - 0; Other Eukaryotes - 6204 (source: NCBI BLink).  protein_id AT5G11380.1p  transcript_id AT5G11380.1  protein_id AT5G11380.1p  transcript_id AT5G11380.1  
At5g11390	chr5:003633971	0.0	W/3633971-3634568,3634670-3635859,3635960-3636139,3636275-3636418	AT5G11390.1  CDS  gene_syn F2I11.280, F2I11_280  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68910.1); Has 54957 Blast hits to 30266 proteins in 1463 species: Archae - 703; Bacteria - 5790; Metazoa - 29515; Fungi - 4292; Plants - 2100; Viruses - 148; Other Eukaryotes - 12409 (source: NCBI BLink).  protein_id AT5G11390.1p  transcript_id AT5G11390.1  protein_id AT5G11390.1p  transcript_id AT5G11390.1  
At5g11400	chr5:003637978	0.0	C/3637978-3638059,3637668-3637885,3637427-3637565,3637203-3637342,3637074-3637122,3636614-3636924	AT5G11400.1  CDS  gene_syn F2I11.290, F2I11_290  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase-related  note protein kinase-related; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: sepal, flower, pedicel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G11410.1); Has 15256 Blast hits to 15066 proteins in 418 species: Archae - 0; Bacteria - 169; Metazoa - 2714; Fungi - 41; Plants - 11599; Viruses - 30; Other Eukaryotes - 703 (source: NCBI BLink).  protein_id AT5G11400.1p  transcript_id AT5G11400.1  protein_id AT5G11400.1p  transcript_id AT5G11400.1  
At5g11410	chr5:003639805	0.0	C/3639805-3639883,3639496-3639722,3639252-3639387,3639032-3639168,3638832-3638949,3638431-3638744	AT5G11410.1  CDS  gene_syn F15N18.1  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase-related (TAIR:AT5G11400.1); Has 50617 Blast hits to 50193 proteins in 1381 species: Archae - 14; Bacteria - 3816; Metazoa - 20722; Fungi - 2918; Plants - 14699; Viruses - 160; Other Eukaryotes - 8288 (source: NCBI BLink).  protein_id AT5G11410.1p  transcript_id AT5G11410.1  protein_id AT5G11410.1p  transcript_id AT5G11410.1  
At5g11412	chr5:003640349	0.0	C/3640349-3640876	AT5G11412.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  product nucleic acid binding / nucleotide binding  note nucleic acid binding / nucleotide binding; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT5G53680.1); Has 12598 Blast hits to 10300 proteins in 549 species: Archae - 0; Bacteria - 879; Metazoa - 7127; Fungi - 1247; Plants - 2138; Viruses - 0; Other Eukaryotes - 1207 (source: NCBI BLink).  protein_id AT5G11412.1p  transcript_id AT5G11412.1  protein_id AT5G11412.1p  transcript_id AT5G11412.1  
At5g11416	chr5:003642780	0.0	C/3642780-3643010	AT5G11416.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G11416.1p  transcript_id AT5G11416.1  protein_id AT5G11416.1p  transcript_id AT5G11416.1  
At5g11420	chr5:003644655	0.0	W/3644655-3644730,3645489-3645986,3646465-3646991	AT5G11420.1  CDS  gene_syn F15N18.10, F15N18_10  go_component cell wall|GO:0005618|15593128|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25460.1); Has 185 Blast hits to 157 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 185; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G11420.1p  transcript_id AT5G11420.1  protein_id AT5G11420.1p  transcript_id AT5G11420.1  
At5g11425	chr5:003647959	0.0	C/3647959-3648168	AT5G11425.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G11425.1p  transcript_id AT5G11425.1  protein_id AT5G11425.1p  transcript_id AT5G11425.1  
At5g11430	chr5:003648469	0.0	W/3648469-3650159,3650623-3650743,3651339-3651398,3651507-3652256	AT5G11430.1  CDS  gene_syn F15N18.20, F15N18_20  go_component nucleus|GO:0005634||IEA  go_process transcription|GO:0006350||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue C-terminal (InterPro:IPR012921), Transcription elongation factor S-IIM (InterPro:IPR017890), Transcription elongation factor S-II, central region (InterPro:IPR003618); BEST Arabidopsis thaliana protein match is: transcription elongation factor-related (TAIR:AT5G25520.2); Has 930 Blast hits to 893 proteins in 159 species: Archae - 0; Bacteria - 30; Metazoa - 522; Fungi - 184; Plants - 85; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).  protein_id AT5G11430.1p  transcript_id AT5G11430.1  protein_id AT5G11430.1p  transcript_id AT5G11430.1  
At5g11440	chr5:003653284	0.0	C/3653284-3653607,3653060-3653203	AT5G11440.1  CDS  gene_syn CID5, F15N18.30, F15N18_30, INCREASED POLYPLOIDY LEVEL IN DARKNESS 1, IPD1  gene CID5  function Interacts with PAB (poly A binding protein) in yeast two hybrid experiments. Contains PAM2 motif, a PABC interacting domain.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515|15650869|IPI  product CID5; protein binding  note CID5; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); BEST Arabidopsis thaliana protein match is: CID6 (CTC-Interacting Domain 6); protein binding (TAIR:AT5G25540.1); Has 17 Blast hits to 17 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G11440.1p  transcript_id AT5G11440.1  protein_id AT5G11440.1p  transcript_id AT5G11440.1  
At5g11450	chr5:003654475	0.0	W/3654475-3654524,3654616-3654791,3654989-3655118,3655198-3655247,3655327-3655394,3655487-3655582,3655663-3655722,3655814-3655873,3655968-3656022,3656124-3656173,3656259-3656357	AT5G11450.1  CDS  gene_syn F15N18.40, F15N18_40  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_process photosynthesis|GO:0015979||IEA  go_function calcium ion binding|GO:0005509||IEA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|ISS  product oxygen-evolving complex-related  note oxygen-evolving complex-related; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); Has 81 Blast hits to 81 proteins in 22 species: Archae - 0; Bacteria - 22; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G11450.1p  transcript_id AT5G11450.1  protein_id AT5G11450.1p  transcript_id AT5G11450.1  
At5g11460	chr5:003657514	0.0	C/3657514-3658388,3657064-3657223	AT5G11460.1  CDS  gene_syn F15N18.50, F15N18_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product senescence-associated protein-related  note senescence-associated protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: senescence-associated protein-related (TAIR:AT2G25690.2); Has 276 Blast hits to 276 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 276; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G11460.1p  transcript_id AT5G11460.1  protein_id AT5G11460.1p  transcript_id AT5G11460.1  
At5g11470	chr5:003666679	0.0	C/3666679-3667041,3666027-3666195,3665068-3665924,3664819-3664983,3664301-3664393,3664037-3664115,3663855-3663945,3663626-3663725,3663407-3663523,3663216-3663272	AT5G11470.1  CDS  gene_syn F15N18.60, F15N18_60  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product DNA binding / nucleic acid binding  note DNA binding / nucleic acid binding; FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Bromo adjacent region (InterPro:IPR001025); BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT3G15605.3); Has 547 Blast hits to 430 proteins in 83 species: Archae - 0; Bacteria - 6; Metazoa - 289; Fungi - 30; Plants - 56; Viruses - 4; Other Eukaryotes - 162 (source: NCBI BLink).  protein_id AT5G11470.1p  transcript_id AT5G11470.1  protein_id AT5G11470.1p  transcript_id AT5G11470.1  
At5g11475	chr5:003669000	0.0	C/3669000-3669072	AT5G11475.1  tRNA  gene_syn 67613.TRNA-PHE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Phe (anticodon: GAA)  transcript_id AT5G11475.1  
At5g11480	chr5:003670967	0.0	C/3670967-3671471,3670034-3670103,3669692-3669854,3669350-3669568	AT5G11480.1  CDS  gene_syn F15N18.70, F15N18_70  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_function GTP binding|GO:0005525||IEA  go_process biological_process|GO:0008150||ND  product GTP binding  note GTP binding; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding (InterPro:IPR005289), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: EMB2001 (embryo defective 2001); GTP binding (TAIR:AT2G22870.1); Has 5119 Blast hits to 5076 proteins in 1347 species: Archae - 69; Bacteria - 3394; Metazoa - 92; Fungi - 98; Plants - 89; Viruses - 0; Other Eukaryotes - 1377 (source: NCBI BLink).  protein_id AT5G11480.1p  transcript_id AT5G11480.1  protein_id AT5G11480.1p  transcript_id AT5G11480.1  
At5g11490	chr5:003671964	0.0	W/3671964-3672016,3672415-3672931,3673045-3673169,3673255-3673453,3673702-3673930,3674028-3674194,3674299-3674508,3674623-3674733,3674827-3675003,3675114-3675560,3675854-3676144	AT5G11490.1  CDS  go_component membrane coat|GO:0030117||IEA  go_component clathrin adaptor complex|GO:0030131||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process protein transport|GO:0015031||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function protein transporter activity|GO:0008565||IEA  product adaptin family protein  note adaptin family protein; FUNCTIONS IN: protein transporter activity, protein binding, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; LOCATED IN: membrane coat, clathrin adaptor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, beta-adaptin, appendage, C-terminal subdomain (InterPro:IPR015151), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028), Adaptor protein complex, beta subunit (InterPro:IPR016342), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: beta-adaptin, putative (TAIR:AT4G23460.1); Has 1821 Blast hits to 1784 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 868; Fungi - 426; Plants - 151; Viruses - 0; Other Eukaryotes - 376 (source: NCBI BLink).  protein_id AT5G11490.1p  transcript_id AT5G11490.1  protein_id AT5G11490.1p  transcript_id AT5G11490.1  
At5g11500	chr5:003676747	0.0	W/3676747-3676859,3677889-3678016,3678156-3678259,3678371-3678458,3678645-3678706,3678794-3678946	AT5G11500.1  CDS  gene_syn F15N18.90, F15N18_90  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF814 (InterPro:IPR008532); Has 474 Blast hits to 464 proteins in 164 species: Archae - 0; Bacteria - 62; Metazoa - 174; Fungi - 86; Plants - 37; Viruses - 1; Other Eukaryotes - 114 (source: NCBI BLink).  protein_id AT5G11500.1p  transcript_id AT5G11500.1  protein_id AT5G11500.1p  transcript_id AT5G11500.1  
At5g11510	chr5:003680452	0.0	W/3680452-3680504,3680631-3680685,3680925-3680982,3681074-3681168,3681283-3681386,3681494-3681622,3681731-3683468,3683681-3683940,3684034-3684148,3684279-3684464,3684592-3684684	AT5G11510.1  CDS  gene_syn AtMYB3R4, F15N18.100, F15N18_100, MYB3R-4, myb domain protein 3R-4, myb domain protein 3R4  gene MYB3R-4  function Arabidopsis thaliana putative c-myb-like transcription factor MYB3R-4  go_process cell cycle|GO:0007049|17287251|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process regulation of transcription|GO:0045449|17287251|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function transcription coactivator activity|GO:0003713|17287251|IDA  product MYB3R-4 (myb domain protein 3R-4); DNA binding / transcription coactivator/ transcription factor  note myb domain protein 3R-4 (MYB3R-4); FUNCTIONS IN: transcription coactivator activity, transcription factor activity, DNA binding; INVOLVED IN: cell cycle, regulation of transcription; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: PC-MYB1; DNA binding / transcription coactivator/ transcription factor (TAIR:AT4G32730.2); Has 9731 Blast hits to 5927 proteins in 387 species: Archae - 0; Bacteria - 32; Metazoa - 1040; Fungi - 639; Plants - 5155; Viruses - 6; Other Eukaryotes - 2859 (source: NCBI BLink).  protein_id AT5G11510.1p  transcript_id AT5G11510.1  protein_id AT5G11510.1p  transcript_id AT5G11510.1  
At5g11510	chr5:003680452	0.0	W/3680452-3680504,3680631-3680685,3680925-3680982,3681074-3681168,3681283-3681386,3681494-3681622,3681731-3683633	AT5G11510.2  CDS  gene_syn AtMYB3R4, F15N18.100, F15N18_100, MYB3R-4, myb domain protein 3R-4, myb domain protein 3R4  gene MYB3R-4  function Arabidopsis thaliana putative c-myb-like transcription factor MYB3R-4  go_process cell cycle|GO:0007049|17287251|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process regulation of transcription|GO:0045449|17287251|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function transcription coactivator activity|GO:0003713|17287251|IDA  product MYB3R-4 (myb domain protein 3R-4); DNA binding / transcription coactivator/ transcription factor  note myb domain protein 3R-4 (MYB3R-4); FUNCTIONS IN: transcription coactivator activity, transcription factor activity, DNA binding; INVOLVED IN: cell cycle, regulation of transcription; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: PC-MYB1; DNA binding / transcription coactivator/ transcription factor (TAIR:AT4G32730.2); Has 10004 Blast hits to 5916 proteins in 387 species: Archae - 0; Bacteria - 32; Metazoa - 1021; Fungi - 640; Plants - 5446; Viruses - 6; Other Eukaryotes - 2859 (source: NCBI BLink).  protein_id AT5G11510.2p  transcript_id AT5G11510.2  protein_id AT5G11510.2p  transcript_id AT5G11510.2  
At5g11520	chr5:003687536	0.0	C/3687536-3687721,3687154-3687225,3686999-3687060,3686827-3686910,3686636-3686735,3686422-3686542,3686163-3686326,3685927-3686064,3685630-3685846,3685429-3685549,3685257-3685341	AT5G11520.1  CDS  gene_syn ASP3, ASPARTATE AMINOTRANSFERASE 3, ASPARTATE AMINOTRANSFERASE, CHLOROPLAST PRECURSOR, F15N18.110, F15N18_110, YELLOW-LEAF-SPECIFIC GENE 4, YLS4  gene ASP3  function Encodes the chloroplastic isozyme of aspartate aminotransferase. Involved in aspartate biosynthesis and nitrogen metabolism. mRNA is expressed in senescing leaves.  go_component peroxisome|GO:0005777|12154131|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component plastid|GO:0009536|7894512|IDA  go_process nitrogen compound metabolic process|GO:0006807|9611168|IMP  go_process leaf senescence|GO:0010150|11230571|IEP  go_function L-aspartate:2-oxoglutarate aminotransferase activity|GO:0004069|7894512|ISS  product ASP3 (ASPARTATE AMINOTRANSFERASE 3); L-aspartate:2-oxoglutarate aminotransferase  note ASPARTATE AMINOTRANSFERASE 3 (ASP3); FUNCTIONS IN: L-aspartate:2-oxoglutarate aminotransferase activity; INVOLVED IN: leaf senescence, nitrogen compound metabolic process; LOCATED IN: peroxisome, plastid, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase, class I and II (InterPro:IPR004839), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Aspartate/other aminotransferase (InterPro:IPR000796), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: ASP2 (ASPARTATE AMINOTRANSFERASE 2); L-aspartate:2-oxoglutarate aminotransferase (TAIR:AT5G19550.1); Has 3584 Blast hits to 3581 proteins in 828 species: Archae - 0; Bacteria - 2042; Metazoa - 396; Fungi - 264; Plants - 316; Viruses - 0; Other Eukaryotes - 566 (source: NCBI BLink).  protein_id AT5G11520.1p  transcript_id AT5G11520.1  protein_id AT5G11520.1p  transcript_id AT5G11520.1  
At5g11530	chr5:003697140	0.0	W/3697140-3697234,3697347-3697522,3697603-3697722,3697802-3697855,3697945-3699206,3699347-3700930	AT5G11530.1  CDS  gene_syn EMF1, F15N18.120, F15N18_120, embryonic flower 1  gene EMF1  function Involved in regulating reproductive development  go_component nucleus|GO:0005634|18281509|IDA  go_process negative regulation of flower development|GO:0009910|7781888|IMP  go_process meristem determinacy|GO:0010022|11487698|IMP  go_process histone methylation|GO:0016571|18281509|IMP  go_process shoot development|GO:0048367|7781888|IMP  go_process shoot development|GO:0048367|9615462|IGI  go_function transcription regulator activity|GO:0030528|11487698|ISS  product EMF1 (embryonic flower 1); transcription regulator  note embryonic flower 1 (EMF1); FUNCTIONS IN: transcription regulator activity; INVOLVED IN: shoot development, meristem determinacy, negative regulation of flower development, histone methylation; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; Has 165 Blast hits to 154 proteins in 45 species: Archae - 0; Bacteria - 10; Metazoa - 47; Fungi - 7; Plants - 35; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT5G11530.1p  transcript_id AT5G11530.1  protein_id AT5G11530.1p  transcript_id AT5G11530.1  
At5g11540	chr5:003704307	0.0	C/3704307-3704981,3703943-3704198,3703002-3703828	AT5G11540.1  CDS  gene_syn F15N18.130, F15N18_130  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_function catalytic activity|GO:0003824||IEA  go_function D-arabinono-1,4-lactone oxidase activity|GO:0003885||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: D-arabinono-1,4-lactone oxidase activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: D-arabinono-1,4-lactone oxidase (InterPro:IPR007173), FAD-binding, type 2 (InterPro:IPR016166), Plant-specific FAD-dependent oxidoreductase (InterPro:IPR010030), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT2G46740.1); Has 2502 Blast hits to 2426 proteins in 572 species: Archae - 30; Bacteria - 1234; Metazoa - 162; Fungi - 191; Plants - 149; Viruses - 0; Other Eukaryotes - 736 (source: NCBI BLink).  protein_id AT5G11540.1p  transcript_id AT5G11540.1  protein_id AT5G11540.1p  transcript_id AT5G11540.1  
At5g11550	chr5:003708203	0.0	C/3708203-3709147	AT5G11550.1  CDS  gene_syn F15N18.140, F15N18_140  go_component chloroplast|GO:0009507||IEA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 671 Blast hits to 642 proteins in 91 species: Archae - 0; Bacteria - 16; Metazoa - 222; Fungi - 76; Plants - 289; Viruses - 11; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT5G11550.1p  transcript_id AT5G11550.1  protein_id AT5G11550.1p  transcript_id AT5G11550.1  
At5g11560	chr5:003713900	0.0	C/3713900-3713994,3713446-3713573,3713279-3713341,3713043-3713164,3712806-3712921,3711917-3712721,3711057-3711788,3710756-3710977,3710580-3710675,3710300-3710494,3710106-3710219,3709734-3709994	AT5G11560.1  CDS  gene_syn F15N18.150, F15N18_150  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_function catalytic activity|GO:0003824||ISS  product catalytic  note catalytic; FUNCTIONS IN: catalytic activity; LOCATED IN: endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1620 (InterPro:IPR011678), Quinonprotein alcohol dehydrogenase-like (InterPro:IPR011047); Has 361 Blast hits to 325 proteins in 153 species: Archae - 4; Bacteria - 34; Metazoa - 139; Fungi - 102; Plants - 18; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT5G11560.1p  transcript_id AT5G11560.1  protein_id AT5G11560.1p  transcript_id AT5G11560.1  
At5g11570	chr5:003718204	0.0	C/3718204-3718276,3717876-3718093,3717148-3717553,3716410-3716804,3715943-3716296	AT5G11570.1  CDS  gene_syn F15N18.160, F15N18_160  go_component membrane|GO:0016020||IEA  go_process oligopeptide transport|GO:0006857||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, LP.10 ten leaves visible, LP.12 twelve leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT2G02020.1); Has 3597 Blast hits to 3091 proteins in 575 species: Archae - 0; Bacteria - 1245; Metazoa - 428; Fungi - 165; Plants - 1549; Viruses - 0; Other Eukaryotes - 210 (source: NCBI BLink).  protein_id AT5G11570.1p  transcript_id AT5G11570.1  protein_id AT5G11570.1p  transcript_id AT5G11570.1  
At5g11580	chr5:003718913	0.0	W/3718913-3719009,3719097-3719267,3719543-3719578,3719685-3719809,3719893-3721125	AT5G11580.1  CDS  gene_syn F15N18.170, F15N18_170  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function chromatin binding|GO:0003682||ISS  go_function Ran GTPase binding|GO:0008536||ISS  product UVB-resistance protein-related / regulator of chromosome condensation (RCC1) family protein  note UVB-resistance protein-related / regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: chromatin binding, Ran GTPase binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: UVR8 (UVB-RESISTANCE 8); chromatin binding / guanyl-nucleotide exchange factor (TAIR:AT5G63860.1); Has 15654 Blast hits to 4338 proteins in 271 species: Archae - 65; Bacteria - 1617; Metazoa - 6245; Fungi - 716; Plants - 1411; Viruses - 0; Other Eukaryotes - 5600 (source: NCBI BLink).  protein_id AT5G11580.1p  transcript_id AT5G11580.1  protein_id AT5G11580.1p  transcript_id AT5G11580.1  
At5g11590	chr5:003727789	0.0	C/3727789-3728499	AT5G11590.1  CDS  gene_syn T22P22.1, TINY2  gene TINY2  function encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product TINY2 (TINY2); DNA binding / transcription factor  note TINY2 (TINY2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: shoot apex, embryo, hypocotyl, leaf; EXPRESSED DURING: LP.10 ten leaves visible, D bilateral stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: tny (TINY); DNA binding / transcription factor (TAIR:AT5G25810.1); Has 3848 Blast hits to 3723 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3840; Viruses - 2; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G11590.1p  transcript_id AT5G11590.1  protein_id AT5G11590.1p  transcript_id AT5G11590.1  
At5g11600	chr5:003734830	0.0	C/3734830-3735015,3734336-3734551,3734173-3734243,3733815-3734070	AT5G11600.1  CDS  gene_syn T22P22.2  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19990.1); Has 271 Blast hits to 196 proteins in 71 species: Archae - 0; Bacteria - 5; Metazoa - 69; Fungi - 28; Plants - 42; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).  protein_id AT5G11600.1p  transcript_id AT5G11600.1  protein_id AT5G11600.1p  transcript_id AT5G11600.1  
At5g11610	chr5:003737452	0.0	C/3737452-3737952,3737223-3737353,3736492-3736846,3735569-3736222	AT5G11610.1  CDS  gene_syn T22P22.3  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product exostosin family protein  note exostosin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: exostosin family protein (TAIR:AT5G25820.1); Has 809 Blast hits to 805 proteins in 87 species: Archae - 0; Bacteria - 10; Metazoa - 228; Fungi - 4; Plants - 492; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT5G11610.1p  transcript_id AT5G11610.1  protein_id AT5G11610.1p  transcript_id AT5G11610.1  
At5g11610	chr5:003737452	0.0	C/3737452-3737952,3737223-3737353,3736492-3736846,3735881-3736222,3735736-3735768	AT5G11610.2  CDS  gene_syn T22P22.3  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product exostosin family protein  note exostosin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: exostosin family protein (TAIR:AT5G25820.1); Has 232 Blast hits to 231 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 226; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G11610.2p  transcript_id AT5G11610.2  protein_id AT5G11610.2p  transcript_id AT5G11610.2  
At5g11620	chr5:003739666	0.0	C/3739666-3740127,3739076-3739435	AT5G11620.1  CDS  gene_syn T22P22.10, T22P22_10  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related  note SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, SWIM-type (InterPro:IPR007527), Zinc finger, RING-type (InterPro:IPR001841); Has 129 Blast hits to 129 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 36; Fungi - 57; Plants - 24; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT5G11620.1p  transcript_id AT5G11620.1  protein_id AT5G11620.1p  transcript_id AT5G11620.1  
At5g11630	chr5:003740545	0.0	W/3740545-3740675,3740759-3740877,3741504-3741529	AT5G11630.2  CDS  gene_syn T22P22.20, T22P22_20  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.2); Has 54 Blast hits to 54 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G11630.2p  transcript_id AT5G11630.2  protein_id AT5G11630.2p  transcript_id AT5G11630.2  
At5g11630	chr5:003740545	0.0	W/3740545-3740675,3740759-3740909	AT5G11630.1  CDS  gene_syn T22P22.20, T22P22_20  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.1); Has 60 Blast hits to 60 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G11630.1p  transcript_id AT5G11630.1  protein_id AT5G11630.1p  transcript_id AT5G11630.1  
At5g11640	chr5:003742008	0.0	W/3742008-3742199,3742263-3742319,3742404-3742473,3742569-3742610,3742678-3742751,3743113-3743183,3743265-3743350,3743451-3743557,3743641-3743703	AT5G11640.1  CDS  gene_syn T22P22.30, T22P22_30  product unknown protein  note EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); Has 154 Blast hits to 154 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT5G11640.1p  transcript_id AT5G11640.1  protein_id AT5G11640.1p  transcript_id AT5G11640.1  
At5g11650	chr5:003745069	0.0	W/3745069-3745448,3745543-3745581,3745672-3745742,3745845-3745909,3746019-3746108,3746194-3746286,3746382-3746816	AT5G11650.1  CDS  gene_syn T22P22.40, T22P22_40  go_component chloroplast|GO:0009507||IEA  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT1G73480.1); Has 3179 Blast hits to 3173 proteins in 837 species: Archae - 15; Bacteria - 1973; Metazoa - 122; Fungi - 103; Plants - 252; Viruses - 53; Other Eukaryotes - 661 (source: NCBI BLink).  protein_id AT5G11650.1p  transcript_id AT5G11650.1  protein_id AT5G11650.1p  transcript_id AT5G11650.1  
At5g11660	chr5:003748880	0.0	W/3748880-3749068,3749157-3749318,3749413-3749466,3749707-3749841,3749931-3750317	AT5G11660.1  CDS  gene_syn T22P22.50, T22P22_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05030.1); Has 385 Blast hits to 372 proteins in 16 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 10; Plants - 371; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G11660.1p  transcript_id AT5G11660.1  protein_id AT5G11660.1p  transcript_id AT5G11660.1  
At5g11670	chr5:003754456	0.0	W/3754456-3754598,3754807-3754927,3755024-3755098,3755213-3755364,3755440-3755545,3755642-3755707,3755807-3755902,3755997-3756068,3756162-3756245,3756346-3756444,3756534-3756581,3756668-3756721,3756817-3756915,3757000-3757089,3757177-3757254,3757380-3757454,3757550-3757640,3757734-3757862,3757952-3758040	AT5G11670.1  CDS  gene_syn ATNADP-ME2, NADP-malic enzyme 2, T22P22.60, T22P22_60  gene ATNADP-ME2  function The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME2 is presumably a cytosolic enzyme involved in malate metabolism and possibly assisting the oxidative pentose phosphate pathway. AtNADP-ME2 counts for the major part of NADP-ME activity in mature tissues of Arabidopsis.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process response to cadmium ion|GO:0046686|17075075|IEP  go_process malate metabolic process|GO:0006108|16113210|TAS  go_process malate metabolic process|GO:0006108||ISS  go_process pentose-phosphate shunt, oxidative branch|GO:0009051|16113210|TAS  go_function malic enzyme activity|GO:0004470||ISS  go_function malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|GO:0004473|16113210|IDA  go_function oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor|GO:0016652||ISS  product ATNADP-ME2 (NADP-malic enzyme 2); malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor  note NADP-malic enzyme 2 (ATNADP-ME2); FUNCTIONS IN: oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor, malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity, malic enzyme activity; INVOLVED IN: response to cadmium ion, pentose-phosphate shunt, oxidative branch, malate metabolic process; LOCATED IN: apoplast, cell wall, plasma membrane, chloroplast, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Malic oxidoreductase (InterPro:IPR001891), Malic enzyme, NAD-binding (InterPro:IPR012302), Malic enzyme, conserved site (InterPro:IPR015884), Malic enzyme, N-terminal (InterPro:IPR012301), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: ATNADP-ME3 (NADP-malic enzyme 3); malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor (TAIR:AT5G25880.1); Has 6132 Blast hits to 6121 proteins in 1334 species: Archae - 86; Bacteria - 3256; Metazoa - 555; Fungi - 153; Plants - 276; Viruses - 0; Other Eukaryotes - 1806 (source: NCBI BLink).  protein_id AT5G11670.1p  transcript_id AT5G11670.1  protein_id AT5G11670.1p  transcript_id AT5G11670.1  
At5g11680	chr5:003759463	0.0	W/3759463-3759572,3759807-3759918,3760045-3760116,3760208-3760434,3760532-3760634	AT5G11680.1  CDS  gene_syn T22P22.70, T22P22_70  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component cytosol|GO:0005829|17925997|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; Has 136 Blast hits to 136 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 58; Fungi - 26; Plants - 24; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT5G11680.1p  transcript_id AT5G11680.1  protein_id AT5G11680.1p  transcript_id AT5G11680.1  
At5g11690	chr5:003761759	0.0	W/3761759-3762160	AT5G11690.1  CDS  gene_syn ATTIM17-3, T22P22.80, T22P22_80  gene ATTIM17-3  function mitochondrial inner membrane translocase  go_process protein transport|GO:0015031||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744|12692332|TAS  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744||ISS  go_process protein transport|GO:0015031||ISS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product ATTIM17-3; P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter  note ATTIM17-3; FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: mitochondrial inner membrane presequence translocase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial import inner membrane translocase, subunit Tim17/22 (InterPro:IPR003397); BEST Arabidopsis thaliana protein match is: ATTIM17-2; P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter (TAIR:AT2G37410.2); Has 491 Blast hits to 490 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 275; Fungi - 98; Plants - 70; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT5G11690.1p  transcript_id AT5G11690.1  protein_id AT5G11690.1p  transcript_id AT5G11690.1  
At5g11700	chr5:003770282	0.0	C/3770282-3771123,3769700-3769815,3769354-3769562,3768984-3769103,3768646-3768777,3768422-3768547,3768137-3768192,3767941-3768040,3767752-3767854,3767352-3767552,3766736-3767057,3766501-3766594,3766248-3766356,3765695-3765966,3765338-3765465,3764982-3765216,3764691-3764879,3764320-3764606,3763814-3763928,3763458-3763700,3763207-3763295,3762961-3763108	AT5G11700.1  CDS  gene_syn T22P22.90, T22P22_90  go_component vacuole|GO:0005773|15539469|IDA  product glycine-rich protein  note glycine-rich protein; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G32920.1); Has 18880 Blast hits to 5113 proteins in 512 species: Archae - 8; Bacteria - 11034; Metazoa - 2791; Fungi - 423; Plants - 1865; Viruses - 220; Other Eukaryotes - 2539 (source: NCBI BLink).  protein_id AT5G11700.1p  transcript_id AT5G11700.1  protein_id AT5G11700.1p  transcript_id AT5G11700.1  
At5g11700	chr5:003770282	0.0	C/3770282-3771123,3769700-3769815,3769354-3769562,3768984-3769103,3768646-3768777,3768422-3768547,3768137-3768192,3767941-3768040,3767752-3767854,3767352-3767552,3766736-3767057,3766501-3766594,3766248-3766356,3765695-3765966,3765338-3765465,3764982-3765216,3764691-3764879,3764320-3764606,3764226-3764247,3764087-3764133,3763814-3764030,3763458-3763700,3763207-3763295,3762961-3763108	AT5G11700.2  CDS  gene_syn T22P22.90, T22P22_90  product glycine-rich protein  note glycine-rich protein; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G32920.1).  protein_id AT5G11700.2p  transcript_id AT5G11700.2  protein_id AT5G11700.2p  transcript_id AT5G11700.2  
At5g11710	chr5:003772981	0.0	W/3772981-3773021,3773113-3773164,3773552-3773631,3773720-3773798,3773887-3773970,3774058-3774203,3774290-3774508,3774724-3774857,3774990-3775180,3775376-3775781,3776066-3776316	AT5G11710.1  CDS  gene_syn T22P22.100, T22P22_100  function EPSIN1 plays an important role in the vacuolar trafficking of soluble proteins at the trans-Golgi network via its interaction with gamma-ADR, VTI11, VSR1, and clathrin. Associated with actin filaments and with the Golgi complex. Expressed in most tissues.  go_component thylakoid|GO:0009579|11826309|IDA  go_component Golgi apparatus|GO:0005794|16905657|IDA  go_component actin filament|GO:0005884|16905657|IDA  go_process protein targeting to vacuole|GO:0006623|16905657|IMP  go_function binding|GO:0005488||ISS  product epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related  note epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related; FUNCTIONS IN: binding; INVOLVED IN: protein targeting to vacuole; LOCATED IN: thylakoid, actin filament, Golgi apparatus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Epsin, N-terminal (InterPro:IPR001026), Epsin-like, N-terminal (InterPro:IPR013809), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: epsin N-terminal homology (ENTH) domain-containing protein (TAIR:AT2G43160.4); Has 2846 Blast hits to 1390 proteins in 213 species: Archae - 2; Bacteria - 361; Metazoa - 763; Fungi - 400; Plants - 135; Viruses - 1; Other Eukaryotes - 1184 (source: NCBI BLink).  protein_id AT5G11710.1p  transcript_id AT5G11710.1  protein_id AT5G11710.1p  transcript_id AT5G11710.1  
At5g11720	chr5:003776840	0.0	W/3776840-3777072,3777202-3777905,3778020-3778250,3778321-3778967,3779047-3779470,3779556-3780025	AT5G11720.1  CDS  gene_syn T22P22.110, T22P22_110  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product alpha-glucosidase 1 (AGLU1)  note alpha-glucosidase 1 (AGLU1); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: apoplast, vacuole, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 31 (InterPro:IPR000322), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase (TAIR:AT1G68560.1); Has 3080 Blast hits to 2893 proteins in 605 species: Archae - 49; Bacteria - 1445; Metazoa - 688; Fungi - 472; Plants - 143; Viruses - 0; Other Eukaryotes - 283 (source: NCBI BLink).  protein_id AT5G11720.1p  transcript_id AT5G11720.1  protein_id AT5G11720.1p  transcript_id AT5G11720.1  
At5g11730	chr5:003780963	0.0	W/3780963-3781484,3781835-3782473	AT5G11730.1  CDS  gene_syn T22P22.120, T22P22_120  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF266, plant (InterPro:IPR004949); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25970.1); Has 339 Blast hits to 339 proteins in 14 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 306; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT5G11730.1p  transcript_id AT5G11730.1  protein_id AT5G11730.1p  transcript_id AT5G11730.1  
At5g11740	chr5:003784318	0.0	W/3784318-3784503	AT5G11740.1  CDS  gene_syn AGP15, ARABINOGALACTAN PROTEIN 15, ATAGP15, T22P22.130, T22P22_130  gene AGP15  function Encodes arabinogalactan protein (AGP15).  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  product AGP15 (ARABINOGALACTAN PROTEIN 15)  note ARABINOGALACTAN PROTEIN 15 (AGP15); LOCATED IN: anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 10 Blast hits to 10 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G11740.1p  transcript_id AT5G11740.1  protein_id AT5G11740.1p  transcript_id AT5G11740.1  
At5g11750	chr5:003787343	0.0	W/3787343-3787555,3788124-3788273,3788346-3788432,3788548-3788681,3788821-3788926	AT5G11750.1  CDS  gene_syn T22P22.140, T22P22_140  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L19 family protein  note ribosomal protein L19 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein L19 (InterPro:IPR001857); BEST Arabidopsis thaliana protein match is: ribosomal protein L19 family protein (TAIR:AT4G11630.1); Has 5371 Blast hits to 5371 proteins in 1489 species: Archae - 0; Bacteria - 2923; Metazoa - 91; Fungi - 42; Plants - 95; Viruses - 0; Other Eukaryotes - 2220 (source: NCBI BLink).  protein_id AT5G11750.1p  transcript_id AT5G11750.1  protein_id AT5G11750.1p  transcript_id AT5G11750.1  
At5g11760	chr5:003789754	0.0	W/3789754-3790299	AT5G11760.1  CDS  gene_syn T22P22.150, T22P22_150  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1764, eukaryotic (InterPro:IPR013885); Has 31 Blast hits to 31 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 9; Plants - 9; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT5G11760.1p  transcript_id AT5G11760.1  protein_id AT5G11760.1p  transcript_id AT5G11760.1  
At5g11770	chr5:003792508	0.0	C/3792508-3792929,3791148-3791382	AT5G11770.1  CDS  gene_syn T22P22.160, T22P22_160  go_function NADH dehydrogenase (ubiquinone) activity|GO:0008137||IEA  go_function oxidoreductase activity, acting on NADH or NADPH|GO:0016651||IEA  go_function 4 iron, 4 sulfur cluster binding|GO:0051539||IEA  go_component mitochondrion|GO:0005739|12837548|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process mitochondrial electron transport, NADH to ubiquinone|GO:0006120||ISS  go_function NADH dehydrogenase (ubiquinone) activity|GO:0008137||ISS  product NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial  note NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial; FUNCTIONS IN: 4 iron, 4 sulfur cluster binding, NADH dehydrogenase (ubiquinone) activity, oxidoreductase activity, acting on NADH or NADPH; INVOLVED IN: mitochondrial electron transport, NADH to ubiquinone; LOCATED IN: mitochondrion, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NADH ubiquinone oxidoreductase, 20 kDa subunit (InterPro:IPR006137), [NiFe]-hydrogenase-3-type complex, small subunit/NADH:quinone oxidoreductase, subunit NuoB (InterPro:IPR014406), NADH dehydrogenase (ubiquinone), 20 kDa subunit (InterPro:IPR006138); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATCG00430.1); Has 5538 Blast hits to 5538 proteins in 1210 species: Archae - 237; Bacteria - 2512; Metazoa - 155; Fungi - 86; Plants - 407; Viruses - 0; Other Eukaryotes - 2141 (source: NCBI BLink).  protein_id AT5G11770.1p  transcript_id AT5G11770.1  protein_id AT5G11770.1p  transcript_id AT5G11770.1  
At5g11780	chr5:003793928	0.0	W/3793928-3794690,3794832-3794890,3795087-3795256,3795334-3795485,3795613-3795983	AT5G11780.1  CDS  gene_syn T22P22.170, T22P22_170  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 19 Blast hits to 18 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G11780.1p  transcript_id AT5G11780.1  protein_id AT5G11780.1p  transcript_id AT5G11780.1  
At5g11790	chr5:003799682	0.0	W/3799682-3799741,3800549-3800648,3800759-3800856,3800989-3801077,3801278-3801338,3801420-3801506,3801605-3801682,3801772-3801828,3801928-3801983,3802075-3802210,3802284-3802496	AT5G11790.1  CDS  gene_syn T22P22.180, T22P22_180  go_component cellular_component|GO:0005575||ND  go_process cell differentiation|GO:0030154||ISS  go_function molecular_function|GO:0003674||ND  product Ndr family protein  note Ndr family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell differentiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pollen specific protein SF21 (InterPro:IPR015511), Ndr (InterPro:IPR004142); BEST Arabidopsis thaliana protein match is: Ndr family protein (TAIR:AT5G56750.1); Has 689 Blast hits to 689 proteins in 89 species: Archae - 0; Bacteria - 44; Metazoa - 480; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT5G11790.1p  transcript_id AT5G11790.1  protein_id AT5G11790.1p  transcript_id AT5G11790.1  
At5g11800	chr5:003807790	0.0	C/3807790-3808069,3807439-3807482,3807164-3807225,3806975-3807053,3806837-3806898,3806673-3806748,3806496-3806570,3806051-3806122,3805881-3805964,3805598-3805666,3805411-3805488,3805206-3805294,3805024-3805120,3804878-3804931,3804587-3804682,3804278-3804466,3804118-3804195,3803969-3804013,3803790-3803879,3803635-3803709	AT5G11800.1  CDS  gene_syn ATKEA6, KEA6, T22P22.190, T22P22_190  gene KEA6  function member of Putative potassium proton antiporter family  go_component membrane|GO:0016020|17432890|IDA  go_process cation transport|GO:0006812||IEA  go_process potassium ion transport|GO:0006813||ISS  go_function potassium ion transmembrane transporter activity|GO:0015079||ISS  go_function potassium:hydrogen antiporter activity|GO:0015386|11500563|NAS  go_function potassium:hydrogen antiporter activity|GO:0015386||ISS  product KEA6; potassium ion transmembrane transporter/ potassium:hydrogen antiporter  note KEA6; FUNCTIONS IN: potassium:hydrogen antiporter activity, potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport, cation transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: ATKEA4; potassium ion transmembrane transporter/ potassium:hydrogen antiporter (TAIR:AT2G19600.1); Has 6210 Blast hits to 6207 proteins in 1216 species: Archae - 234; Bacteria - 4683; Metazoa - 61; Fungi - 55; Plants - 187; Viruses - 0; Other Eukaryotes - 990 (source: NCBI BLink).  protein_id AT5G11800.1p  transcript_id AT5G11800.1  protein_id AT5G11800.1p  transcript_id AT5G11800.1  
At5g11810	chr5:003808739	0.0	W/3808739-3808877,3809224-3809294,3809431-3809483,3809581-3810060,3810167-3810257,3810354-3810440	AT5G11810.1  CDS  gene_syn F14F18.1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 21 Blast hits to 21 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G11810.1p  transcript_id AT5G11810.1  protein_id AT5G11810.1p  transcript_id AT5G11810.1  
At5g11820	chr5:003810649	0.0	C/3810649-3811176	AT5G11820.1  CDS  gene_syn F14F18.2  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26050.1); Has 18 Blast hits to 17 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G11820.1p  transcript_id AT5G11820.1  protein_id AT5G11820.1p  transcript_id AT5G11820.1  
At5g11830	chr5:003812520	0.0	C/3812520-3813044	AT5G11830.1  CDS  gene_syn F14F18.3  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26090.1); Has 12 Blast hits to 11 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G11830.1p  transcript_id AT5G11830.1  protein_id AT5G11830.1p  transcript_id AT5G11830.1  
At5g11840	chr5:003814319	0.0	C/3814319-3814805,3814109-3814137,3813954-3814010,3813610-3813834	AT5G11840.1  CDS  gene_syn F14F18.10, F14F18_10  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1230 (InterPro:IPR009631); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G67370.1); Has 259 Blast hits to 259 proteins in 68 species: Archae - 0; Bacteria - 96; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).  protein_id AT5G11840.1p  transcript_id AT5G11840.1  protein_id AT5G11840.1p  transcript_id AT5G11840.1  
At5g11850	chr5:003820581	0.0	C/3820581-3821024,3819875-3820315,3819593-3819696,3818897-3819491,3818548-3818815,3818282-3818322,3818065-3818133,3817866-3817966,3817592-3817670,3817325-3817492,3817170-3817219,3816920-3817096,3816632-3816737	AT5G11850.1  CDS  gene_syn F14F18.20, F14F18_20  go_component plasma membrane|GO:0005886|14506206|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G73660.1); Has 91962 Blast hits to 90314 proteins in 3336 species: Archae - 43; Bacteria - 7366; Metazoa - 41562; Fungi - 7560; Plants - 19045; Viruses - 454; Other Eukaryotes - 15932 (source: NCBI BLink).  protein_id AT5G11850.1p  transcript_id AT5G11850.1  protein_id AT5G11850.1p  transcript_id AT5G11850.1  
At5g11860	chr5:003823038	0.0	C/3823038-3823395,3822569-3822906,3822024-3822245	AT5G11860.1  CDS  gene_syn F14F18.30, F14F18_30  go_function phosphatase activity|GO:0016791||IEA  go_component chromosome, centromeric region|GO:0000775|15469496|IDA  go_component nucleus|GO:0005634|15469496|IDA  go_component chromosome|GO:0005694|15469496|IDA  go_process biological_process|GO:0008150||ND  product NLI interacting factor (NIF) family protein  note NLI interacting factor (NIF) family protein; FUNCTIONS IN: phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dullard-like phosphatase domain (InterPro:IPR011948), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: NLI interacting factor (NIF) family protein (TAIR:AT5G46410.2); Has 2040 Blast hits to 2040 proteins in 179 species: Archae - 0; Bacteria - 12; Metazoa - 736; Fungi - 368; Plants - 198; Viruses - 1; Other Eukaryotes - 725 (source: NCBI BLink).  protein_id AT5G11860.1p  transcript_id AT5G11860.1  protein_id AT5G11860.1p  transcript_id AT5G11860.1  
At5g11860	chr5:003823038	0.0	C/3823038-3823395,3822569-3822906,3822024-3822245	AT5G11860.2  CDS  gene_syn F14F18.30, F14F18_30  go_function phosphatase activity|GO:0016791||IEA  go_component chromosome, centromeric region|GO:0000775|15469496|IDA  go_component nucleus|GO:0005634|15469496|IDA  go_component chromosome|GO:0005694|15469496|IDA  go_process biological_process|GO:0008150||ND  product NLI interacting factor (NIF) family protein  note NLI interacting factor (NIF) family protein; FUNCTIONS IN: phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dullard-like phosphatase domain (InterPro:IPR011948), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: NLI interacting factor (NIF) family protein (TAIR:AT5G46410.2); Has 2040 Blast hits to 2040 proteins in 179 species: Archae - 0; Bacteria - 12; Metazoa - 736; Fungi - 368; Plants - 198; Viruses - 1; Other Eukaryotes - 725 (source: NCBI BLink).  protein_id AT5G11860.2p  transcript_id AT5G11860.2  protein_id AT5G11860.2p  transcript_id AT5G11860.2  
At5g11860	chr5:003823038	0.0	C/3823038-3823395,3822569-3822906,3822024-3822245	AT5G11860.3  CDS  gene_syn F14F18.30, F14F18_30  go_function phosphatase activity|GO:0016791||IEA  go_component chromosome, centromeric region|GO:0000775|15469496|IDA  go_component nucleus|GO:0005634|15469496|IDA  go_component chromosome|GO:0005694|15469496|IDA  go_process biological_process|GO:0008150||ND  product NLI interacting factor (NIF) family protein  note NLI interacting factor (NIF) family protein; FUNCTIONS IN: phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dullard-like phosphatase domain (InterPro:IPR011948), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: NLI interacting factor (NIF) family protein (TAIR:AT5G46410.2); Has 2040 Blast hits to 2040 proteins in 179 species: Archae - 0; Bacteria - 12; Metazoa - 736; Fungi - 368; Plants - 198; Viruses - 1; Other Eukaryotes - 725 (source: NCBI BLink).  protein_id AT5G11860.3p  transcript_id AT5G11860.3  protein_id AT5G11860.3p  transcript_id AT5G11860.3  
At5g11860	chr5:003823038	0.0	C/3823038-3823395,3822569-3822906,3822024-3822245	AT5G11860.4  CDS  gene_syn F14F18.30, F14F18_30  go_function phosphatase activity|GO:0016791||IEA  go_component chromosome, centromeric region|GO:0000775|15469496|IDA  go_component nucleus|GO:0005634|15469496|IDA  go_component chromosome|GO:0005694|15469496|IDA  go_process biological_process|GO:0008150||ND  product NLI interacting factor (NIF) family protein  note NLI interacting factor (NIF) family protein; FUNCTIONS IN: phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dullard-like phosphatase domain (InterPro:IPR011948), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: NLI interacting factor (NIF) family protein (TAIR:AT5G46410.2); Has 2040 Blast hits to 2040 proteins in 179 species: Archae - 0; Bacteria - 12; Metazoa - 736; Fungi - 368; Plants - 198; Viruses - 1; Other Eukaryotes - 725 (source: NCBI BLink).  protein_id AT5G11860.4p  transcript_id AT5G11860.4  protein_id AT5G11860.4p  transcript_id AT5G11860.4  
At5g11870	chr5:003825720	0.0	W/3825720-3825879,3825989-3826088,3826159-3826279,3826653-3826774,3826878-3826999,3827078-3827241	AT5G11870.1  CDS  gene_syn F14F18.40, F14F18_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: SAG18 (SENESCENCE ASSOCIATED GENE 18) (TAIR:AT1G71190.1); Has 117 Blast hits to 115 proteins in 40 species: Archae - 0; Bacteria - 65; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT5G11870.1p  transcript_id AT5G11870.1  protein_id AT5G11870.1p  transcript_id AT5G11870.1  
At5g11880	chr5:003829440	0.0	C/3829440-3829942,3829161-3829335,3828917-3829066,3828644-3828805,3828367-3828552,3828148-3828270,3827984-3828073,3827806-3827886	AT5G11880.1  CDS  gene_syn F14F18.50, F14F18_50  go_component chloroplast|GO:0009507|18431481|IDA  go_process lysine biosynthetic process via diaminopimelate|GO:0009089||IEA  go_process lysine biosynthetic process via diaminopimelate|GO:0009089||ISS  go_function diaminopimelate decarboxylase activity|GO:0008836|15652176|IGI  go_function diaminopimelate decarboxylase activity|GO:0008836||ISS  product diaminopimelate decarboxylase, putative / DAP carboxylase, putative  note diaminopimelate decarboxylase, putative / DAP carboxylase, putative; FUNCTIONS IN: diaminopimelate decarboxylase activity; INVOLVED IN: lysine biosynthetic process via diaminopimelate; LOCATED IN: chloroplast; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Diaminopimelate decarboxylase (InterPro:IPR002986), Alanine racemase/group IV decarboxylase, C-terminal (InterPro:IPR009006), Orn/DAP/Arg decarboxylase 2 (InterPro:IPR000183); BEST Arabidopsis thaliana protein match is: diaminopimelate decarboxylase, putative / DAP carboxylase, putative (TAIR:AT3G14390.1); Has 9175 Blast hits to 9153 proteins in 1459 species: Archae - 98; Bacteria - 4313; Metazoa - 390; Fungi - 136; Plants - 310; Viruses - 27; Other Eukaryotes - 3901 (source: NCBI BLink).  protein_id AT5G11880.1p  transcript_id AT5G11880.1  protein_id AT5G11880.1p  transcript_id AT5G11880.1  
At5g11890	chr5:003831770	0.0	W/3831770-3832633	AT5G11890.1  CDS  gene_syn F14F18.60, F14F18_60  go_component plasma membrane|GO:0005886|17317660|IDA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17620.1); Has 455 Blast hits to 454 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 453; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G11890.1p  transcript_id AT5G11890.1  protein_id AT5G11890.1p  transcript_id AT5G11890.1  
At5g11900	chr5:003834154	0.0	W/3834154-3834301,3834633-3834731,3835000-3835058,3835266-3835347,3835441-3835508,3835796-3835879,3835967-3836023	AT5G11900.1  CDS  gene_syn F14F18.70, F14F18_70  go_process translational initiation|GO:0006413||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_component cellular_component|GO:0005575||ND  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product eukaryotic translation initiation factor SUI1 family protein  note eukaryotic translation initiation factor SUI1 family protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor SUI1 (InterPro:IPR001950), Density-regulated protein DRP1 (InterPro:IPR005873); Has 351 Blast hits to 351 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 157; Fungi - 113; Plants - 29; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT5G11900.1p  transcript_id AT5G11900.1  protein_id AT5G11900.1p  transcript_id AT5G11900.1  
At5g11910	chr5:003838131	0.0	C/3838131-3838182,3837761-3837879,3837554-3837636,3837351-3837472,3837083-3837247,3836900-3836993,3836560-3836818	AT5G11910.1  CDS  gene_syn F14F18.80, F14F18_80  go_function catalytic activity|GO:0003824||ISS  product esterase/lipase/thioesterase family protein  note esterase/lipase/thioesterase family protein; FUNCTIONS IN: catalytic activity; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: esterase/lipase/thioesterase family protein (TAIR:AT3G47590.1); Has 1529 Blast hits to 1528 proteins in 349 species: Archae - 22; Bacteria - 652; Metazoa - 2; Fungi - 38; Plants - 102; Viruses - 0; Other Eukaryotes - 713 (source: NCBI BLink).  protein_id AT5G11910.1p  transcript_id AT5G11910.1  protein_id AT5G11910.1p  transcript_id AT5G11910.1  
At5g11910	chr5:003838131	0.0	C/3838131-3838182,3837761-3837879,3837554-3837636,3837351-3837472,3837083-3837247,3836900-3836993,3836792-3836807	AT5G11910.2  CDS  gene_syn F14F18.80, F14F18_80  go_function catalytic activity|GO:0003824||ISS  product esterase/lipase/thioesterase family protein  note esterase/lipase/thioesterase family protein; FUNCTIONS IN: catalytic activity; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: esterase/lipase/thioesterase family protein (TAIR:AT3G47590.1); Has 886 Blast hits to 885 proteins in 260 species: Archae - 16; Bacteria - 483; Metazoa - 0; Fungi - 14; Plants - 102; Viruses - 0; Other Eukaryotes - 271 (source: NCBI BLink).  protein_id AT5G11910.2p  transcript_id AT5G11910.2  protein_id AT5G11910.2p  transcript_id AT5G11910.2  
At5g11920	chr5:003839490	0.0	W/3839490-3839580,3839851-3839859,3839955-3840820,3840910-3841071,3841459-3841552,3842012-3842070	AT5G11920.2  CDS  gene_syn 6-&1-fructan exohydrolase, AtcwINV6, F14F18.90, F14F18_90  gene AtcwINV6  function Encodes a protein with fructan exohydrolase (FEH) activity acting on both inulin and levan-type fructans (1- and 6-FEH). The enzyme does not have invertase activity.  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function levanase activity|GO:0031219||IDA  go_function inulinase activity|GO:0051670||IDA  product AtcwINV6 (6-&1-fructan exohydrolase); hydrolase, hydrolyzing O-glycosyl compounds / inulinase/ levanase  note 6-&1-fructan exohydrolase (AtcwINV6); FUNCTIONS IN: inulinase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, levanase activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 32 (InterPro:IPR001362), Glycoside hydrolase, family 32, active site (InterPro:IPR018053), Glycosyl hydrolases family 32, N-terminal (InterPro:IPR013148); BEST Arabidopsis thaliana protein match is: ATBFRUCT1; beta-fructofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT3G13790.1); Has 2138 Blast hits to 2128 proteins in 611 species: Archae - 4; Bacteria - 1181; Metazoa - 5; Fungi - 176; Plants - 583; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).  protein_id AT5G11920.2p  transcript_id AT5G11920.2  protein_id AT5G11920.2p  transcript_id AT5G11920.2  
At5g11920	chr5:003839490	0.0	W/3839490-3839580,3839851-3839859,3839955-3840820,3840910-3841071,3841459-3841697,3841805-3841895,3842012-3842206	AT5G11920.1  CDS  gene_syn 6-&1-fructan exohydrolase, AtcwINV6, F14F18.90, F14F18_90  gene AtcwINV6  function Encodes a protein with fructan exohydrolase (FEH) activity acting on both inulin and levan-type fructans (1- and 6-FEH). The enzyme does not have invertase activity.  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function levanase activity|GO:0031219||IDA  go_function inulinase activity|GO:0051670||IDA  product AtcwINV6 (6-&1-fructan exohydrolase); hydrolase, hydrolyzing O-glycosyl compounds / inulinase/ levanase  note 6-&1-fructan exohydrolase (AtcwINV6); FUNCTIONS IN: inulinase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, levanase activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 32 (InterPro:IPR001362), Glycosyl hydrolases family 32, N-terminal (InterPro:IPR013148), Glycoside hydrolase, family 32, active site (InterPro:IPR018053), Glycosyl hydrolase family 32, C-terminal (InterPro:IPR013189), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: ATFRUCT5 (BETA-FRUCTOFURANOSIDASE 5); hydrolase, hydrolyzing O-glycosyl compounds / levanase (TAIR:AT1G55120.1); Has 2196 Blast hits to 2181 proteins in 630 species: Archae - 4; Bacteria - 1185; Metazoa - 5; Fungi - 178; Plants - 634; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink).  protein_id AT5G11920.1p  transcript_id AT5G11920.1  protein_id AT5G11920.1p  transcript_id AT5G11920.1  
At5g11930	chr5:003845165	0.0	C/3845165-3845611	AT5G11930.1  CDS  gene_syn F14F18.100, F14F18_100  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  product glutaredoxin family protein  note glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutaredoxin active site (InterPro:IPR011767), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin family protein (TAIR:AT4G33040.1); Has 511 Blast hits to 511 proteins in 69 species: Archae - 0; Bacteria - 16; Metazoa - 91; Fungi - 0; Plants - 389; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT5G11930.1p  transcript_id AT5G11930.1  protein_id AT5G11930.1p  transcript_id AT5G11930.1  
At5g11940	chr5:003849283	0.0	W/3849283-3849390,3849475-3849566,3849651-3849748,3849844-3849999,3850069-3850739,3850836-3851119,3851212-3851326,3851465-3851657,3851846-3852417	AT5G11940.1  CDS  gene_syn F14F18.110, F14F18_110  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product subtilase family protein  note subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: embryo; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT4G10540.1); Has 3521 Blast hits to 3336 proteins in 587 species: Archae - 97; Bacteria - 1904; Metazoa - 34; Fungi - 105; Plants - 909; Viruses - 0; Other Eukaryotes - 472 (source: NCBI BLink).  protein_id AT5G11940.1p  transcript_id AT5G11940.1  protein_id AT5G11940.1p  transcript_id AT5G11940.1  
At5g11950	chr5:003855072	0.0	W/3855072-3855182,3855533-3855630,3855720-3855750,3855982-3856081,3856165-3856235,3856317-3856460,3856720-3856815	AT5G11950.1  CDS  gene_syn F14F18.120, F14F18_120  function Encodes a protein of unknown function. It has been crystallized and shown to be structurally almost identical to the protein encoded by At2G37210.  go_process lysine biosynthetic process via diaminopimelate|GO:0009089||IEA  go_component cellular_component|GO:0005575||ND  go_function protein homodimerization activity|GO:0042803|17048257|IDA  product protein homodimerization  note protein homodimerization; FUNCTIONS IN: protein homodimerization activity; INVOLVED IN: lysine biosynthetic process via diaminopimelate; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37210.1); Has 2881 Blast hits to 2880 proteins in 720 species: Archae - 13; Bacteria - 1639; Metazoa - 8; Fungi - 79; Plants - 184; Viruses - 0; Other Eukaryotes - 958 (source: NCBI BLink).  protein_id AT5G11950.1p  transcript_id AT5G11950.1  protein_id AT5G11950.1p  transcript_id AT5G11950.1  
At5g11950	chr5:003855072	0.0	W/3855072-3855182,3855533-3855630,3855720-3855750,3855982-3856081,3856165-3856235,3856317-3856460,3856720-3856815	AT5G11950.2  CDS  gene_syn F14F18.120, F14F18_120  function Encodes a protein of unknown function. It has been crystallized and shown to be structurally almost identical to the protein encoded by At2G37210.  go_component cellular_component|GO:0005575||ND  go_function protein homodimerization activity|GO:0042803|17048257|IDA  product protein homodimerization  note protein homodimerization; FUNCTIONS IN: protein homodimerization activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37210.1); Has 2881 Blast hits to 2880 proteins in 720 species: Archae - 13; Bacteria - 1639; Metazoa - 8; Fungi - 79; Plants - 184; Viruses - 0; Other Eukaryotes - 958 (source: NCBI BLink).  protein_id AT5G11950.2p  transcript_id AT5G11950.2  protein_id AT5G11950.2p  transcript_id AT5G11950.2  
At5g11960	chr5:003861352	0.0	C/3861352-3861462,3860898-3860996,3860636-3860765,3860412-3860500,3860124-3860180,3859948-3860006,3859584-3859704,3859254-3859402,3858852-3859071	AT5G11960.1  CDS  gene_syn F14F18.130, F14F18_130  go_component membrane|GO:0016020||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); Has 392 Blast hits to 392 proteins in 102 species: Archae - 0; Bacteria - 106; Metazoa - 113; Fungi - 51; Plants - 71; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT5G11960.1p  transcript_id AT5G11960.1  protein_id AT5G11960.1p  transcript_id AT5G11960.1  
At5g11970	chr5:003863289	0.0	C/3863289-3863606	AT5G11970.1  CDS  gene_syn F14F18.140, F14F18_140  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19460.1); Has 127 Blast hits to 127 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G11970.1p  transcript_id AT5G11970.1  protein_id AT5G11970.1p  transcript_id AT5G11970.1  
At5g11977	chr5:003867213	0.0	W/3867213-3867308	AT5G11977.1  miRNA  gene_syn MICRORNA 156E, MIR156E  gene MIR156E  function Encodes a microRNA that targets several SPL family members, including SPL3,4, and 5. By regulating the expression of SPL3 (and probably also SPL4 and SPL5), this microRNA regulates vegetative phase change. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGACAGAAGAGAGUGAGCAC  go_component cellular_component|GO:0005575||ND  go_process gene silencing by miRNA|GO:0035195|15200956|TAS  go_function molecular_function|GO:0003674||ND  product MIR156E (MICRORNA 156E); miRNA  transcript_id AT5G11977.1  
At5g11980	chr5:003872021	0.0	C/3872021-3872146,3871779-3871931,3871132-3871280,3870925-3871002,3870737-3870830,3870558-3870632,3870137-3870433,3869978-3870045,3869832-3869886,3869584-3869722,3869232-3869416,3868809-3869099	AT5G11980.1  CDS  gene_syn F14F18.150, F14F18_150  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product conserved oligomeric Golgi complex component-related / COG complex component-related  note conserved oligomeric Golgi complex component-related / COG complex component-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved oligomeric Golgi complex, COG8 (InterPro:IPR016632), Dor1-like protein (InterPro:IPR007255); Has 311 Blast hits to 311 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 169; Fungi - 82; Plants - 28; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT5G11980.1p  transcript_id AT5G11980.1  protein_id AT5G11980.1p  transcript_id AT5G11980.1  
At5g11990	chr5:003872651	0.0	C/3872651-3873196	AT5G11990.1  CDS  gene_syn F14F18.160, F14F18_160  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  product proline-rich family protein  note proline-rich family protein; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: flower, root; EXPRESSED DURING: petal differentiation and expansion stage; Has 40770 Blast hits to 19318 proteins in 936 species: Archae - 78; Bacteria - 4222; Metazoa - 16206; Fungi - 4892; Plants - 8411; Viruses - 1743; Other Eukaryotes - 5218 (source: NCBI BLink).  protein_id AT5G11990.1p  transcript_id AT5G11990.1  protein_id AT5G11990.1p  transcript_id AT5G11990.1  
At5g12000	chr5:003876606	0.0	C/3876606-3876780,3876444-3876517,3876039-3876364,3875655-3875943,3875463-3875564,3874248-3875373,3874151-3874164	AT5G12000.1  CDS  gene_syn F14F18.170, F14F18_170  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product kinase  note kinase; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G26150.1); Has 87267 Blast hits to 85354 proteins in 3257 species: Archae - 62; Bacteria - 8618; Metazoa - 37861; Fungi - 6837; Plants - 18538; Viruses - 251; Other Eukaryotes - 15100 (source: NCBI BLink).  protein_id AT5G12000.1p  transcript_id AT5G12000.1  protein_id AT5G12000.1p  transcript_id AT5G12000.1  
At5g12010	chr5:003877975	0.0	C/3877975-3879483	AT5G12010.1  CDS  gene_syn F14F18.180, F14F18_180  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to salt stress|GO:0009651|11351099|IEP  product unknown protein  note unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 746 Blast hits to 744 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 425; Fungi - 40; Plants - 268; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT5G12010.1p  transcript_id AT5G12010.1  protein_id AT5G12010.1p  transcript_id AT5G12010.1  
At5g12020	chr5:003882409	0.0	C/3882409-3882876	AT5G12020.1  CDS  gene_syn 17.6 KDA CLASS II HEAT SHOCK PROTEIN, F14F18.190, F14F18_190, HSP17.6II  gene HSP17.6II  go_component cellular_component|GO:0005575||ND  go_process response to heat|GO:0009408||ISS  product HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN)  note 17.6 KDA CLASS II HEAT SHOCK PROTEIN (HSP17.6II); INVOLVED IN: response to heat; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: AT-HSP17.6A (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.6A); unfolded protein binding (TAIR:AT5G12030.1); Has 4227 Blast hits to 4227 proteins in 942 species: Archae - 102; Bacteria - 2394; Metazoa - 83; Fungi - 183; Plants - 932; Viruses - 0; Other Eukaryotes - 533 (source: NCBI BLink).  protein_id AT5G12020.1p  transcript_id AT5G12020.1  protein_id AT5G12020.1p  transcript_id AT5G12020.1  
At5g12030	chr5:003884214	0.0	C/3884214-3884684	AT5G12030.1  CDS  gene_syn ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.6A, AT-HSP17.6A, F14F18.200, F14F18_200, HEAT SHOCK PROTEIN 17.6, HSP17.6  gene AT-HSP17.6A  function Encodes a cytosolic small heat shock protein with chaperone activity that is induced by heat and osmotic stress and is also expressed late in seed development.  go_component cytosol|GO:0005829|11576425|TAS  go_process protein folding|GO:0006457|11576425|IDA  go_process hyperosmotic response|GO:0006972|11576425|IMP  go_process response to heat|GO:0009408|17059409|IEP  go_process response to high light intensity|GO:0009644|17059409|IEP  go_process response to hydrogen peroxide|GO:0042542|17059409|IEP  go_function unfolded protein binding|GO:0051082|11576425|IDA  product AT-HSP17.6A (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.6A); unfolded protein binding  note ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.6A (AT-HSP17.6A); FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding, response to high light intensity, response to hydrogen peroxide, response to heat, hyperosmotic response; LOCATED IN: cytosol; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN) (TAIR:AT5G12020.1); Has 4317 Blast hits to 4317 proteins in 881 species: Archae - 102; Bacteria - 2323; Metazoa - 120; Fungi - 216; Plants - 941; Viruses - 2; Other Eukaryotes - 613 (source: NCBI BLink).  protein_id AT5G12030.1p  transcript_id AT5G12030.1  protein_id AT5G12030.1p  transcript_id AT5G12030.1  
At5g12040	chr5:003885162	0.0	W/3885162-3885422,3885509-3885625,3885775-3885999,3886323-3886416,3886774-3886848,3886964-3887042,3887136-3887151,3887360-3887440,3887530-3887612,3887694-3887772	AT5G12040.1  CDS  gene_syn F14F18.210, F14F18_210  go_component chloroplast|GO:0009507|18431481|IDA  go_process nitrogen compound metabolic process|GO:0006807||IEA  go_function hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds|GO:0016810||IEA  go_process nitrogen compound metabolic process|GO:0006807||ISS  go_function hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds|GO:0016810||ISS  product carbon-nitrogen hydrolase family protein  note carbon-nitrogen hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds; INVOLVED IN: nitrogen compound metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (InterPro:IPR003010); BEST Arabidopsis thaliana protein match is: nitrilase, putative (TAIR:AT4G08790.1); Has 7669 Blast hits to 7633 proteins in 1259 species: Archae - 157; Bacteria - 4426; Metazoa - 472; Fungi - 267; Plants - 192; Viruses - 11; Other Eukaryotes - 2144 (source: NCBI BLink).  protein_id AT5G12040.1p  transcript_id AT5G12040.1  protein_id AT5G12040.1p  transcript_id AT5G12040.1  
At5g12040	chr5:003885162	0.0	W/3885162-3885422,3885509-3885625,3885775-3885999,3886323-3886416,3886774-3886848,3886964-3887042,3887136-3887169	AT5G12040.2  CDS  gene_syn F14F18.210, F14F18_210  go_component chloroplast|GO:0009507|18431481|IDA  go_process nitrogen compound metabolic process|GO:0006807||IEA  go_function hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds|GO:0016810||IEA  go_process nitrogen compound metabolic process|GO:0006807||ISS  go_function hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds|GO:0016810||ISS  product carbon-nitrogen hydrolase family protein  note carbon-nitrogen hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds; INVOLVED IN: nitrogen compound metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (InterPro:IPR003010); BEST Arabidopsis thaliana protein match is: nitrilase, putative (TAIR:AT4G08790.1); Has 6449 Blast hits to 6413 proteins in 1207 species: Archae - 147; Bacteria - 3609; Metazoa - 464; Fungi - 229; Plants - 189; Viruses - 11; Other Eukaryotes - 1800 (source: NCBI BLink).  protein_id AT5G12040.2p  transcript_id AT5G12040.2  protein_id AT5G12040.2p  transcript_id AT5G12040.2  
At5g12043	chr5:003888760	0.0	C/3888760-3888894	AT5G12043.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G12043.1p  transcript_id AT5G12043.1  protein_id AT5G12043.1p  transcript_id AT5G12043.1  
At5g12050	chr5:003890213	0.0	W/3890213-3891301	AT5G12050.1  CDS  gene_syn F14F18.220, F14F18_220  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 394 Blast hits to 270 proteins in 56 species: Archae - 0; Bacteria - 6; Metazoa - 148; Fungi - 21; Plants - 52; Viruses - 0; Other Eukaryotes - 167 (source: NCBI BLink).  protein_id AT5G12050.1p  transcript_id AT5G12050.1  protein_id AT5G12050.1p  transcript_id AT5G12050.1  
At5g12060	chr5:003894919	0.0	C/3894919-3895371	AT5G12060.1  CDS  gene_syn F14F18.4  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product self-incompatibility protein-related  note self-incompatibility protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12070.1); Has 97 Blast hits to 94 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G12060.1p  transcript_id AT5G12060.1  protein_id AT5G12060.1p  transcript_id AT5G12060.1  
At5g12070	chr5:003896950	0.0	C/3896950-3897408	AT5G12070.1  CDS  gene_syn F14F18.5  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: self-incompatibility protein-related (TAIR:AT5G12060.1); Has 77 Blast hits to 74 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G12070.1p  transcript_id AT5G12070.1  protein_id AT5G12070.1p  transcript_id AT5G12070.1  
At5g12080	chr5:003899581	0.0	C/3899581-3900923,3899366-3899489,3898795-3899088,3898504-3898706,3898182-3898422	AT5G12080.1  CDS  gene_syn F14F18.230, F14F18_230, MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 10, MSL10  gene MSL10  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|18485707|IDA  go_component membrane|GO:0016020||ISS  go_process detection of mechanical stimulus|GO:0050982|18485707|IMP  go_function mechanically-gated ion channel activity|GO:0008381|18485707|IMP  product MSL10 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 10); mechanically-gated ion channel  note MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 10 (MSL10); FUNCTIONS IN: mechanically-gated ion channel activity; INVOLVED IN: detection of mechanical stimulus; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Membrane protein, At2g17000, predicted (InterPro:IPR016688), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: MSL9 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 9); mechanically-gated ion channel (TAIR:AT5G19520.1); Has 2071 Blast hits to 2068 proteins in 596 species: Archae - 92; Bacteria - 1325; Metazoa - 0; Fungi - 121; Plants - 82; Viruses - 0; Other Eukaryotes - 451 (source: NCBI BLink).  protein_id AT5G12080.1p  transcript_id AT5G12080.1  protein_id AT5G12080.1p  transcript_id AT5G12080.1  
At5g12080	chr5:003899581	0.0	C/3899581-3900923,3899366-3899489,3898795-3899088,3898504-3898706,3898182-3898422	AT5G12080.2  CDS  gene_syn F14F18.230, F14F18_230, MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 10, MSL10  gene MSL10  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|18485707|IDA  go_component membrane|GO:0016020||ISS  go_process detection of mechanical stimulus|GO:0050982|18485707|IMP  go_function mechanically-gated ion channel activity|GO:0008381|18485707|IMP  product MSL10 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 10); mechanically-gated ion channel  note MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 10 (MSL10); FUNCTIONS IN: mechanically-gated ion channel activity; INVOLVED IN: detection of mechanical stimulus; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Membrane protein, At2g17000, predicted (InterPro:IPR016688), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: MSL9 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 9); mechanically-gated ion channel (TAIR:AT5G19520.1); Has 2071 Blast hits to 2068 proteins in 596 species: Archae - 92; Bacteria - 1325; Metazoa - 0; Fungi - 121; Plants - 82; Viruses - 0; Other Eukaryotes - 451 (source: NCBI BLink).  protein_id AT5G12080.2p  transcript_id AT5G12080.2  protein_id AT5G12080.2p  transcript_id AT5G12080.2  
At5g12080	chr5:003899581	0.0	C/3899581-3900923,3899366-3899489,3898795-3899088,3898504-3898706,3898182-3898422	AT5G12080.3  CDS  gene_syn F14F18.230, F14F18_230, MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 10, MSL10  gene MSL10  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|18485707|IDA  go_component membrane|GO:0016020||ISS  go_process detection of mechanical stimulus|GO:0050982|18485707|IMP  go_function mechanically-gated ion channel activity|GO:0008381|18485707|IMP  product MSL10 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 10); mechanically-gated ion channel  note MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 10 (MSL10); FUNCTIONS IN: mechanically-gated ion channel activity; INVOLVED IN: detection of mechanical stimulus; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Membrane protein, At2g17000, predicted (InterPro:IPR016688), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: MSL9 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 9); mechanically-gated ion channel (TAIR:AT5G19520.1); Has 2071 Blast hits to 2068 proteins in 596 species: Archae - 92; Bacteria - 1325; Metazoa - 0; Fungi - 121; Plants - 82; Viruses - 0; Other Eukaryotes - 451 (source: NCBI BLink).  protein_id AT5G12080.3p  transcript_id AT5G12080.3  protein_id AT5G12080.3p  transcript_id AT5G12080.3  
At5g12085	chr5:003904992	0.0	C/3904992-3909497	AT5G12085.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 2.0e-197 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At5g12090	chr5:003909703	0.0	W/3909703-3909730,3909796-3910877	AT5G12090.1  CDS  gene_syn MXC9.5, MXC9_5  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G27510.1); Has 57720 Blast hits to 57285 proteins in 1441 species: Archae - 49; Bacteria - 2855; Metazoa - 29072; Fungi - 6191; Plants - 7758; Viruses - 239; Other Eukaryotes - 11556 (source: NCBI BLink).  protein_id AT5G12090.1p  transcript_id AT5G12090.1  protein_id AT5G12090.1p  transcript_id AT5G12090.1  
At5g12100	chr5:003911388	0.0	W/3911388-3913838	AT5G12100.1  CDS  gene_syn MXC9.6, MXC9_6  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G65560.1); Has 29988 Blast hits to 6281 proteins in 212 species: Archae - 6; Bacteria - 50; Metazoa - 1208; Fungi - 865; Plants - 26117; Viruses - 0; Other Eukaryotes - 1742 (source: NCBI BLink).  protein_id AT5G12100.1p  transcript_id AT5G12100.1  protein_id AT5G12100.1p  transcript_id AT5G12100.1  
At5g12110	chr5:003914483	0.0	W/3914483-3914568,3914668-3914784,3914874-3914949,3915119-3915248,3915370-3915483,3915569-3915732	AT5G12110.1  CDS  gene_syn MXC9.7, MXC9_7  go_component eukaryotic translation elongation factor 1 complex|GO:0005853||IEA  go_process translational elongation|GO:0006414||IEA  go_function translation elongation factor activity|GO:0003746||IEA  go_component eukaryotic translation elongation factor 1 complex|GO:0005853||ISS  go_process translational elongation|GO:0006414||ISS  go_function translation elongation factor activity|GO:0003746||ISS  product elongation factor 1B alpha-subunit 1 (eEF1Balpha1)  note elongation factor 1B alpha-subunit 1 (eEF1Balpha1); FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: eukaryotic translation elongation factor 1 complex; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EF1B/ribosomal protein S6 (InterPro:IPR014717), Translation elongation factor EF1B, beta and delta chains, guanine nucleotide exchange (InterPro:IPR014038), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Translation elongation factor EF1B, beta/delta chains, conserved site (InterPro:IPR001326); BEST Arabidopsis thaliana protein match is: elongation factor 1B alpha-subunit 2 (eEF1Balpha2) (TAIR:AT5G19510.1); Has 715 Blast hits to 715 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 374; Fungi - 104; Plants - 110; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).  protein_id AT5G12110.1p  transcript_id AT5G12110.1  protein_id AT5G12110.1p  transcript_id AT5G12110.1  
At5g12120	chr5:003916229	0.0	C/3916229-3918088	AT5G12120.1  CDS  gene_syn MXC9.8, MXC9_8  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  product ubiquitin-associated (UBA)/TS-N domain-containing protein  note ubiquitin-associated (UBA)/TS-N domain-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940); BEST Arabidopsis thaliana protein match is: ubiquitin-associated (UBA)/TS-N domain-containing protein (TAIR:AT2G26920.1); Has 346 Blast hits to 332 proteins in 63 species: Archae - 0; Bacteria - 2; Metazoa - 124; Fungi - 55; Plants - 32; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).  protein_id AT5G12120.1p  transcript_id AT5G12120.1  protein_id AT5G12120.1p  transcript_id AT5G12120.1  
At5g12130	chr5:003919613	0.0	W/3919613-3919766,3919878-3919946,3920095-3920240,3920322-3920398,3920489-3920576,3920657-3920737,3920832-3920888,3920981-3921062,3921155-3921204,3921350-3921406,3921492-3921570,3921686-3921744,3921902-3921959,3922057-3922154	AT5G12130.1  CDS  gene_syn ATTERC, MXC9.9, MXC9_9, PDE149, PIGMENT DEFECTIVE 149, TELLURITE RESISTANCE C  gene PDE149  go_component chloroplast thylakoid membrane|GO:0009535|18429937|IDA  go_component integral to membrane|GO:0016021||ISS  go_process thylakoid membrane organization|GO:0010027|18429937|IMP  product PDE149 (PIGMENT DEFECTIVE 149)  note PIGMENT DEFECTIVE 149 (PDE149); INVOLVED IN: thylakoid membrane organization; LOCATED IN: chloroplast thylakoid membrane, integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Integral membrane protein TerC (InterPro:IPR005496); Has 2303 Blast hits to 2303 proteins in 668 species: Archae - 4; Bacteria - 1555; Metazoa - 2; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 721 (source: NCBI BLink).  protein_id AT5G12130.1p  transcript_id AT5G12130.1  protein_id AT5G12130.1p  transcript_id AT5G12130.1  
At5g12140	chr5:003923817	0.0	C/3923817-3923936,3923295-3923480	AT5G12140.1  CDS  gene_syn A. thaliana cystatin-1, ATCYS1, MXC9.10, MXC9_10  gene ATCYS1  function Encodes a cystatin.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function cysteine-type endopeptidase inhibitor activity|GO:0004869||IEA  go_process biological_process|GO:0008150||ND  go_function cysteine-type endopeptidase inhibitor activity|GO:0004869||ISS  product ATCYS1 (A. thaliana cystatin-1); cysteine-type endopeptidase inhibitor  note A. thaliana cystatin-1 (ATCYS1); FUNCTIONS IN: cysteine-type endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I25, cystatin, conserved site (InterPro:IPR018073), Proteinase inhibitor I25, cystatin (InterPro:IPR000010); BEST Arabidopsis thaliana protein match is: cysteine protease inhibitor, putative / cystatin, putative (TAIR:AT3G12490.2); Has 446 Blast hits to 424 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 440; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G12140.1p  transcript_id AT5G12140.1  protein_id AT5G12140.1p  transcript_id AT5G12140.1  
At5g12150	chr5:003930047	0.0	C/3930047-3930100,3929710-3929746,3929535-3929611,3929249-3929319,3929095-3929173,3928849-3928993,3928639-3928758,3928323-3928400,3928105-3928160,3927958-3928027,3927790-3927877,3927348-3927588,3927058-3927276,3926482-3926784,3925994-3926043,3925692-3925752,3925533-3925616,3925309-3925419,3925047-3925216,3924866-3924932,3924632-3924769	AT5G12150.2  CDS  gene_syn MXC9.11, MXC9_11  function Encodes a protein with similarity to REN1, a Rho GTPase activating protein.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process signal transduction|GO:0007165|15358268|ISS  go_function Rho GTPase activator activity|GO:0005100|19108776|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein  note pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein; FUNCTIONS IN: Rho GTPase activator activity, phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Rho GTPase activation protein (InterPro:IPR008936), Pleckstrin homology (InterPro:IPR001849), RhoGAP (InterPro:IPR000198); BEST Arabidopsis thaliana protein match is: pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein (TAIR:AT5G19390.3); Has 3259 Blast hits to 3221 proteins in 175 species: Archae - 5; Bacteria - 46; Metazoa - 2484; Fungi - 288; Plants - 112; Viruses - 0; Other Eukaryotes - 324 (source: NCBI BLink).  protein_id AT5G12150.2p  transcript_id AT5G12150.2  protein_id AT5G12150.2p  transcript_id AT5G12150.2  
At5g12150	chr5:003930047	0.0	C/3930047-3930100,3929710-3929746,3929535-3929611,3929249-3929319,3929095-3929173,3928849-3928993,3928639-3928758,3928323-3928400,3928105-3928160,3927958-3928027,3927790-3927877,3927348-3927588,3927058-3927276,3926482-3926784,3925994-3926043,3925692-3925752,3925533-3925616,3925309-3925419,3925047-3925216,3924866-3924932,3924653-3924769,3924393-3924578	AT5G12150.1  CDS  gene_syn MXC9.11, MXC9_11  function Encodes a protein with similarity to REN1, a Rho GTPase activating protein.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process signal transduction|GO:0007165|15358268|ISS  go_function Rho GTPase activator activity|GO:0005100|19108776|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein  note pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein; FUNCTIONS IN: Rho GTPase activator activity, phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Rho GTPase activation protein (InterPro:IPR008936), Pleckstrin homology (InterPro:IPR001849), RhoGAP (InterPro:IPR000198); BEST Arabidopsis thaliana protein match is: pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein (TAIR:AT5G19390.2); Has 3414 Blast hits to 3374 proteins in 203 species: Archae - 5; Bacteria - 100; Metazoa - 2555; Fungi - 302; Plants - 119; Viruses - 0; Other Eukaryotes - 333 (source: NCBI BLink).  protein_id AT5G12150.1p  transcript_id AT5G12150.1  protein_id AT5G12150.1p  transcript_id AT5G12150.1  
At5g12170	chr5:003931649	0.0	W/3931649-3932085,3933438-3933583,3933682-3933719,3933875-3933990,3934076-3934175,3934255-3934290,3934380-3934430,3934527-3934961	AT5G12170.2  CDS  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19380.1); Has 139 Blast hits to 139 proteins in 40 species: Archae - 0; Bacteria - 11; Metazoa - 7; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT5G12170.2p  transcript_id AT5G12170.2  protein_id AT5G12170.2p  transcript_id AT5G12170.2  
At5g12180	chr5:003937136	0.0	W/3937136-3937817,3937944-3938087,3938192-3938344,3938422-3938537,3938620-3938787,3938899-3939026,3939128-3939323	AT5G12180.1  CDS  gene_syn CPK17, MXC9.14, MXC9_14  gene CPK17  function member of Calcium Dependent Protein Kinase  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  go_function kinase activity|GO:0016301||ISS  product CPK17; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase  note CPK17; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CPK34; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G19360.1); Has 104610 Blast hits to 96679 proteins in 2774 species: Archae - 66; Bacteria - 8037; Metazoa - 44401; Fungi - 13059; Plants - 18443; Viruses - 462; Other Eukaryotes - 20142 (source: NCBI BLink).  protein_id AT5G12180.1p  transcript_id AT5G12180.1  protein_id AT5G12180.1p  transcript_id AT5G12180.1  
At5g12190	chr5:003940731	0.0	C/3940731-3941105	AT5G12190.1  CDS  gene_syn MXC9.15, MXC9_15  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT2G14870.1); Has 4144 Blast hits to 3915 proteins in 315 species: Archae - 0; Bacteria - 181; Metazoa - 2335; Fungi - 721; Plants - 421; Viruses - 0; Other Eukaryotes - 486 (source: NCBI BLink).  protein_id AT5G12190.1p  transcript_id AT5G12190.1  protein_id AT5G12190.1p  transcript_id AT5G12190.1  
At5g12200	chr5:003944647	0.0	C/3944647-3944727,3944261-3944419,3944124-3944175,3943727-3943996,3943406-3943617,3943154-3943274,3942876-3942963,3942717-3942795,3942521-3942608,3942392-3942432,3942265-3942317,3941998-3942154,3941700-3941894	AT5G12200.1  CDS  gene_syn MXC9.16, MXC9_16  go_component endomembrane system|GO:0012505||IEA  go_function hydrolase activity|GO:0016787||IEA  go_function hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds|GO:0016810||IEA  go_function dihydropyrimidinase activity|GO:0004157||ISS  product dihydropyrimidinase / DHPase / dihydropyrimidine amidohydrolase / hydantoinase (PYD2)  note dihydropyrimidinase / DHPase / dihydropyrimidine amidohydrolase / hydantoinase (PYD2); FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, dihydropyrimidinase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-hydantoinase (InterPro:IPR011778), Amidohydrolase 1 (InterPro:IPR006680), Metal-dependent hydrolase, composite (InterPro:IPR011059); BEST Arabidopsis thaliana protein match is: ATALN (Arabidopsis allantoinase); allantoinase/ hydrolase (TAIR:AT4G04955.1); Has 7799 Blast hits to 7784 proteins in 1206 species: Archae - 191; Bacteria - 3354; Metazoa - 592; Fungi - 130; Plants - 44; Viruses - 0; Other Eukaryotes - 3488 (source: NCBI BLink).  protein_id AT5G12200.1p  transcript_id AT5G12200.1  protein_id AT5G12200.1p  transcript_id AT5G12200.1  
At5g12210	chr5:003947254	0.0	W/3947254-3947277,3947505-3947558,3947671-3947821,3948082-3948198,3948362-3948428,3948522-3948670,3948934-3949067,3949153-3949251,3949345-3949420,3949501-3949595	AT5G12210.1  CDS  gene_syn MXC9.17, MXC9_17  go_function catalytic activity|GO:0003824||IEA  product geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative  note geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative; FUNCTIONS IN: catalytic activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative (TAIR:AT3G12070.2); Has 1191 Blast hits to 1014 proteins in 185 species: Archae - 0; Bacteria - 22; Metazoa - 495; Fungi - 282; Plants - 120; Viruses - 0; Other Eukaryotes - 272 (source: NCBI BLink).  protein_id AT5G12210.1p  transcript_id AT5G12210.1  protein_id AT5G12210.1p  transcript_id AT5G12210.1  
At5g12210	chr5:003947254	0.0	W/3947254-3947277,3947505-3947558,3947674-3947821,3948082-3948198,3948362-3948428,3948522-3948670,3948934-3949067,3949153-3949251,3949345-3949420,3949501-3949595	AT5G12210.2  CDS  gene_syn MXC9.17, MXC9_17  go_function catalytic activity|GO:0003824||IEA  product geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative  note geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative; FUNCTIONS IN: catalytic activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative (TAIR:AT3G12070.2); Has 1176 Blast hits to 1014 proteins in 185 species: Archae - 0; Bacteria - 22; Metazoa - 490; Fungi - 275; Plants - 123; Viruses - 0; Other Eukaryotes - 266 (source: NCBI BLink).  protein_id AT5G12210.2p  transcript_id AT5G12210.2  protein_id AT5G12210.2p  transcript_id AT5G12210.2  
At5g12220	chr5:003950218	0.0	W/3950218-3950397,3950580-3950746,3950833-3950939,3951033-3951088,3951309-3951483,3951748-3952032,3952149-3953014	AT5G12220.1  CDS  gene_syn MXC9.18, MXC9_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product las1-like family protein  note las1-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Las1-like (InterPro:IPR007174); Has 252 Blast hits to 252 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 79; Plants - 24; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT5G12220.1p  transcript_id AT5G12220.1  protein_id AT5G12220.1p  transcript_id AT5G12220.1  
At5g12230	chr5:003955258	0.0	C/3955258-3955285,3954846-3955135,3954375-3954611,3954126-3954185,3953915-3953965	AT5G12230.1  CDS  gene_syn MXC9.19, MXC9_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19480.2); Has 22700 Blast hits to 10061 proteins in 421 species: Archae - 37; Bacteria - 1646; Metazoa - 10568; Fungi - 2003; Plants - 1402; Viruses - 41; Other Eukaryotes - 7003 (source: NCBI BLink).  protein_id AT5G12230.1p  transcript_id AT5G12230.1  protein_id AT5G12230.1p  transcript_id AT5G12230.1  
At5g12235	chr5:003957740	0.0	W/3957740-3958051	AT5G12235.1  CDS  gene_syn CLAVATA3/ESR-RELATED 22, CLE22  gene CLE22  function Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can partially replace CLV3 function in vivo.  go_component apoplast|GO:0048046|11457943|RCA  go_process signal transduction|GO:0007165||ISS  go_function receptor binding|GO:0005102||ISS  go_function protein binding|GO:0005515|11457943|ISS  product CLE22 (CLAVATA3/ESR-RELATED 22); protein binding / receptor binding  note CLAVATA3/ESR-RELATED 22 (CLE22); FUNCTIONS IN: protein binding, receptor binding; INVOLVED IN: signal transduction; LOCATED IN: apoplast; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G12235.1p  transcript_id AT5G12235.1  protein_id AT5G12235.1p  transcript_id AT5G12235.1  
At5g12236	chr5:003958148	0.0	W/3958148-3958282	AT5G12236.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G12236.1p  transcript_id AT5G12236.1  protein_id AT5G12236.1p  transcript_id AT5G12236.1  
At5g12240	chr5:003960541	0.0	C/3960541-3960777,3960355-3960408,3960049-3960280,3959632-3959672,3959264-3959323,3959120-3959173	AT5G12240.1  CDS  gene_syn MXC9.20, MXC9_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; Has 22 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G12240.1p  transcript_id AT5G12240.1  protein_id AT5G12240.1p  transcript_id AT5G12240.1  
At5g12250	chr5:003962578	0.0	C/3962578-3962971,3962214-3962483,3961317-3962002	AT5G12250.1  CDS  gene_syn BETA-6 TUBULIN, MXC9.21, MXC9_21, TUB6  gene TUB6  function Encodes a beta-tubulin. Expression of TUB6 has been shown to decrease in response to cold treatment.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component microtubule cytoskeleton|GO:0015630|1498609|ISS  go_process microtubule-based process|GO:0007017|1498609|ISS  go_process response to cold|GO:0009409|12231943|IEP  go_function structural constituent of cytoskeleton|GO:0005200|1498609|ISS  product TUB6 (BETA-6 TUBULIN); structural constituent of cytoskeleton  note BETA-6 TUBULIN (TUB6); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: microtubule-based process, response to salt stress, response to cold; LOCATED IN: microtubule cytoskeleton, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase (InterPro:IPR003008), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: TUB3; GTP binding / GTPase/ structural molecule (TAIR:AT5G62700.1); Has 17219 Blast hits to 17164 proteins in 3653 species: Archae - 30; Bacteria - 40; Metazoa - 3623; Fungi - 9661; Plants - 1013; Viruses - 0; Other Eukaryotes - 2852 (source: NCBI BLink).  protein_id AT5G12250.1p  transcript_id AT5G12250.1  protein_id AT5G12250.1p  transcript_id AT5G12250.1  
At5g12260	chr5:003966417	0.0	W/3966417-3967083,3967383-3967546,3967641-3968684	AT5G12260.1  CDS  gene_syn MXC9.22, MXC9_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: glycosyltransferase family protein 2 (TAIR:AT5G60700.1); Has 66 Blast hits to 66 proteins in 22 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 12; Plants - 29; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT5G12260.1p  transcript_id AT5G12260.1  protein_id AT5G12260.1p  transcript_id AT5G12260.1  
At5g12270	chr5:003970805	0.0	C/3970805-3971301,3970131-3970716	AT5G12270.1  CDS  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT3G13610.1); Has 5508 Blast hits to 5494 proteins in 656 species: Archae - 0; Bacteria - 681; Metazoa - 119; Fungi - 528; Plants - 3018; Viruses - 0; Other Eukaryotes - 1162 (source: NCBI BLink).  protein_id AT5G12270.1p  transcript_id AT5G12270.1  protein_id AT5G12270.1p  transcript_id AT5G12270.1  
At5g12280	chr5:003972919	0.0	C/3972919-3972960,3972293-3972796	AT5G12280.2  CDS  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  product RNA binding  note RNA binding; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061); BEST Arabidopsis thaliana protein match is: RNA binding (TAIR:AT3G49130.1).  protein_id AT5G12280.2p  transcript_id AT5G12280.2  protein_id AT5G12280.2p  transcript_id AT5G12280.2  
At5g12280	chr5:003973488	0.0	C/3973488-3973636,3973292-3973370,3973061-3973183,3972317-3972988,3972014-3972250	AT5G12280.1  CDS  go_process RNA processing|GO:0006396||IEA  go_process protein modification process|GO:0006464||IEA  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  product RNA binding  note RNA binding; FUNCTIONS IN: RNA binding; INVOLVED IN: protein modification process, RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061), Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (TAIR:AT1G14650.2); Has 352 Blast hits to 222 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 219; Fungi - 19; Plants - 75; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT5G12280.1p  transcript_id AT5G12280.1  protein_id AT5G12280.1p  transcript_id AT5G12280.1  
At5g12290	chr5:003977834	0.0	C/3977834-3978066,3977512-3977638,3977215-3977418,3976977-3977114,3976704-3976865,3976384-3976578,3976043-3976143,3975728-3975817,3975432-3975504,3975324-3975352,3975114-3975237,3974862-3974972,3974644-3974744,3974374-3974494	AT5G12290.1  CDS  gene_syn DGD1 SUPPRESSOR 1, DGS1  gene DGS1  function Encodes a mitochondrial outer membrane protein, involved in galactoglycerolipid biosynthesis. The dgd1 mutant phenotype is suppressed in the dgs1 mutant background.  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial outer membrane|GO:0005741|18208519|IDA  go_process galactolipid biosynthetic process|GO:0019375|18208519|IMP  go_process hydrogen peroxide biosynthetic process|GO:0050665|18208519|IMP  product DGS1 (DGD1 SUPPRESSOR 1)  note DGD1 SUPPRESSOR 1 (DGS1); INVOLVED IN: galactolipid biosynthetic process, hydrogen peroxide biosynthetic process; LOCATED IN: mitochondrial outer membrane, mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear control of ATP synthase 2 (InterPro:IPR013946); Has 130 Blast hits to 130 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 79; Plants - 27; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT5G12290.1p  transcript_id AT5G12290.1  protein_id AT5G12290.1p  transcript_id AT5G12290.1  
At5g12300	chr5:003978508	0.0	C/3978508-3979632	AT5G12300.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT5G55530.3); Has 1017 Blast hits to 948 proteins in 58 species: Archae - 0; Bacteria - 28; Metazoa - 24; Fungi - 29; Plants - 61; Viruses - 0; Other Eukaryotes - 875 (source: NCBI BLink).  protein_id AT5G12300.1p  transcript_id AT5G12300.1  protein_id AT5G12300.1p  transcript_id AT5G12300.1  
At5g12310	chr5:003982028	0.0	C/3982028-3982093,3981572-3981702,3981104-3981208,3980485-3980947	AT5G12310.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G19430.1); Has 400 Blast hits to 400 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 191; Fungi - 28; Plants - 60; Viruses - 57; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT5G12310.1p  transcript_id AT5G12310.1  protein_id AT5G12310.1p  transcript_id AT5G12310.1  
At5g12320	chr5:003982762	0.0	W/3982762-3982812,3982920-3983007,3983353-3983417,3983521-3983589,3983663-3983712,3983788-3983899	AT5G12320.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2); protein binding (TAIR:AT4G35450.4); Has 73199 Blast hits to 22901 proteins in 870 species: Archae - 83; Bacteria - 4696; Metazoa - 39005; Fungi - 4560; Plants - 1723; Viruses - 912; Other Eukaryotes - 22220 (source: NCBI BLink).  protein_id AT5G12320.1p  transcript_id AT5G12320.1  protein_id AT5G12320.1p  transcript_id AT5G12320.1  
At5g12323	chr5:003985092	0.0	C/3985092-3985202	AT5G12323.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G12323.1p  transcript_id AT5G12323.1  protein_id AT5G12323.1p  transcript_id AT5G12323.1  
At5g12330	chr5:003988394	0.0	C/3988394-3989074	AT5G12330.3  CDS  gene_syn LATERAL ROOT PRIMORDIUM 1, LRP1  gene LRP1  function A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Expressed in lateral root primordia and induced by auxin. SWP1 is involved in the repression of LRP1 via histone deacetylation.  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733|12566580|IEP  go_process root development|GO:0048364|18835563|IMP  go_function protein homodimerization activity|GO:0042803|16740146|IPI  product LRP1 (LATERAL ROOT PRIMORDIUM 1); protein homodimerization  note LATERAL ROOT PRIMORDIUM 1 (LRP1); FUNCTIONS IN: protein homodimerization activity; INVOLVED IN: response to auxin stimulus, root development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SRS7 (SHI-RELATED SEQUENCE 7) (TAIR:AT1G19790.2); Has 125 Blast hits to 119 proteins in 22 species: Archae - 0; Bacteria - 2; Metazoa - 19; Fungi - 2; Plants - 80; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT5G12330.3p  transcript_id AT5G12330.3  protein_id AT5G12330.3p  transcript_id AT5G12330.3  
At5g12330	chr5:003988432	0.0	C/3988432-3989074,3987677-3987996	AT5G12330.1  CDS  gene_syn LATERAL ROOT PRIMORDIUM 1, LRP1  gene LRP1  function A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Expressed in lateral root primordia and induced by auxin. SWP1 is involved in the repression of LRP1 via histone deacetylation.  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733|12566580|IEP  go_process root development|GO:0048364|18835563|IMP  go_function protein homodimerization activity|GO:0042803|16740146|IPI  product LRP1 (LATERAL ROOT PRIMORDIUM 1); protein homodimerization  note LATERAL ROOT PRIMORDIUM 1 (LRP1); FUNCTIONS IN: protein homodimerization activity; INVOLVED IN: response to auxin stimulus, root development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SRS7 (SHI-RELATED SEQUENCE 7) (TAIR:AT1G19790.2); Has 161 Blast hits to 157 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 10; Plants - 82; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT5G12330.1p  transcript_id AT5G12330.1  protein_id AT5G12330.1p  transcript_id AT5G12330.1  
At5g12330	chr5:003988432	0.0	C/3988432-3989074,3987677-3987996	AT5G12330.2  CDS  gene_syn LATERAL ROOT PRIMORDIUM 1, LRP1  gene LRP1  function A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Expressed in lateral root primordia and induced by auxin. SWP1 is involved in the repression of LRP1 via histone deacetylation.  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733|12566580|IEP  go_process root development|GO:0048364|18835563|IMP  go_function protein homodimerization activity|GO:0042803|16740146|IPI  product LRP1 (LATERAL ROOT PRIMORDIUM 1); protein homodimerization  note LATERAL ROOT PRIMORDIUM 1 (LRP1); FUNCTIONS IN: protein homodimerization activity; INVOLVED IN: response to auxin stimulus, root development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SRS7 (SHI-RELATED SEQUENCE 7) (TAIR:AT1G19790.2); Has 161 Blast hits to 157 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 10; Plants - 82; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT5G12330.2p  transcript_id AT5G12330.2  protein_id AT5G12330.2p  transcript_id AT5G12330.2  
At5g12340	chr5:003992948	0.0	C/3992948-3993610	AT5G12340.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, LP.10 ten leaves visible, LP.08 eight leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28190.1); Has 49 Blast hits to 49 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G12340.1p  transcript_id AT5G12340.1  protein_id AT5G12340.1p  transcript_id AT5G12340.1  
At5g12350	chr5:003995789	0.0	W/3995789-3995857,3996374-3996460,3996627-3996716,3996916-3996996,3997117-3997311,3997385-3999502,3999779-3999925,4000015-4000337,4000428-4000545	AT5G12350.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_function zinc ion binding|GO:0008270||IEA  go_function chromatin binding|GO:0003682||ISS  go_function zinc ion binding|GO:0008270||ISS  go_function Ran GTPase binding|GO:0008536||ISS  product Ran GTPase binding / chromatin binding / zinc ion binding  note Ran GTPase binding / chromatin binding / zinc ion binding; FUNCTIONS IN: chromatin binding, zinc ion binding, Ran GTPase binding; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Zinc finger, FYVE-type (InterPro:IPR000306), Zinc finger, FYVE-related (InterPro:IPR017455), Pleckstrin homology-type (InterPro:IPR011993), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Ran GTPase binding / chromatin binding / zinc ion binding (TAIR:AT5G19420.1); Has 18346 Blast hits to 6703 proteins in 319 species: Archae - 53; Bacteria - 1531; Metazoa - 8375; Fungi - 909; Plants - 1520; Viruses - 3; Other Eukaryotes - 5955 (source: NCBI BLink).  protein_id AT5G12350.1p  transcript_id AT5G12350.1  protein_id AT5G12350.1p  transcript_id AT5G12350.1  
At5g12360	chr5:004002179	0.0	C/4002179-4002248,4001418-4001687,4001273-4001319,4000890-4001087	AT5G12360.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14190.1); Has 11 Blast hits to 11 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G12360.1p  transcript_id AT5G12360.1  protein_id AT5G12360.1p  transcript_id AT5G12360.1  
At5g12370	chr5:004008362	0.0	C/4008362-4008445,4008041-4008283,4007876-4007950,4007659-4007760,4007537-4007587,4007349-4007454,4007044-4007157,4006853-4006944,4006474-4006642,4006315-4006391,4006132-4006230,4005954-4006044,4005786-4005871,4005521-4005694,4005272-4005325,4005087-4005203,4004909-4005001,4004616-4004762,4004396-4004493,4004156-4004240,4003733-4003791,4003330-4003428,4003160-4003243,4003002-4003065	AT5G12370.3  CDS  gene_syn EXOCYST COMPLEX COMPONENT SEC10, SEC10  gene SEC10  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process exocytosis|GO:0006887||IEA  go_process vesicle docking|GO:0048278||IEA  go_component exocyst|GO:0000145|18492870|IDA  go_function molecular_function|GO:0003674||ND  product SEC10 (EXOCYST COMPLEX COMPONENT SEC10)  note EXOCYST COMPLEX COMPONENT SEC10 (SEC10); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: exocytosis, vesicle docking; LOCATED IN: plasma membrane, membrane, exocyst; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exocyst complex component Sec10 (InterPro:IPR009976); Has 369 Blast hits to 344 proteins in 119 species: Archae - 0; Bacteria - 4; Metazoa - 145; Fungi - 164; Plants - 31; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT5G12370.3p  transcript_id AT5G12370.3  protein_id AT5G12370.3p  transcript_id AT5G12370.3  
At5g12370	chr5:004008362	0.0	C/4008362-4008445,4008041-4008283,4007876-4007950,4007659-4007760,4007537-4007587,4007349-4007454,4007044-4007157,4006853-4006944,4006474-4006642,4006315-4006391,4006132-4006230,4005954-4006044,4005786-4005871,4005521-4005694,4005272-4005325,4005087-4005203,4004909-4005001,4004616-4004762,4004396-4004493,4004156-4004240,4003733-4003791,4003330-4003428,4003160-4003243,4003002-4003080	AT5G12370.1  CDS  gene_syn EXOCYST COMPLEX COMPONENT SEC10, SEC10  gene SEC10  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process exocytosis|GO:0006887||IEA  go_process vesicle docking|GO:0048278||IEA  go_component exocyst|GO:0000145|18492870|IDA  go_function molecular_function|GO:0003674||ND  product SEC10 (EXOCYST COMPLEX COMPONENT SEC10)  note EXOCYST COMPLEX COMPONENT SEC10 (SEC10); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: exocytosis, vesicle docking; LOCATED IN: plasma membrane, membrane, exocyst; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exocyst complex component Sec10 (InterPro:IPR009976); Has 369 Blast hits to 344 proteins in 119 species: Archae - 0; Bacteria - 4; Metazoa - 145; Fungi - 164; Plants - 31; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT5G12370.1p  transcript_id AT5G12370.1  protein_id AT5G12370.1p  transcript_id AT5G12370.1  
At5g12370	chr5:004008362	0.0	C/4008362-4008445,4008041-4008283,4007876-4007950,4007659-4007760,4007537-4007587,4007349-4007454,4007044-4007157,4006853-4006944,4006474-4006642,4006315-4006391,4006132-4006230,4005954-4006044,4005786-4005871,4005521-4005694,4005272-4005325,4005087-4005203,4004909-4005001,4004616-4004762,4004396-4004493,4004156-4004240,4003733-4003791,4003330-4003428,4003160-4003243,4003002-4003080	AT5G12370.2  CDS  gene_syn EXOCYST COMPLEX COMPONENT SEC10, SEC10  gene SEC10  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process exocytosis|GO:0006887||IEA  go_process vesicle docking|GO:0048278||IEA  go_component exocyst|GO:0000145|18492870|IDA  go_function molecular_function|GO:0003674||ND  product SEC10 (EXOCYST COMPLEX COMPONENT SEC10)  note EXOCYST COMPLEX COMPONENT SEC10 (SEC10); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: exocytosis, vesicle docking; LOCATED IN: plasma membrane, membrane, exocyst; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exocyst complex component Sec10 (InterPro:IPR009976); Has 369 Blast hits to 344 proteins in 119 species: Archae - 0; Bacteria - 4; Metazoa - 145; Fungi - 164; Plants - 31; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT5G12370.2p  transcript_id AT5G12370.2  protein_id AT5G12370.2p  transcript_id AT5G12370.2  
At5g12380	chr5:004009223	0.0	W/4009223-4009295,4009397-4009542,4009629-4009847,4009928-4010140,4010297-4010386,4010478-4010687	AT5G12380.1  CDS  go_function calcium ion binding|GO:0005509||IEA  go_function calcium-dependent phospholipid binding|GO:0005544||IEA  go_function calcium ion binding|GO:0005509||ISS  go_function calcium-dependent phospholipid binding|GO:0005544||ISS  product annexin, putative  note annexin, putative; FUNCTIONS IN: calcium-dependent phospholipid binding, calcium ion binding; EXPRESSED IN: embryo, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Annexin like protein (InterPro:IPR015472), Annexin repeat (InterPro:IPR018502), Annexin (InterPro:IPR001464), Annexin repeat, conserved site (InterPro:IPR018252), Annexin, type plant (InterPro:IPR009118); BEST Arabidopsis thaliana protein match is: ANNAT7 (ANNEXIN ARABIDOPSIS 7); calcium ion binding / calcium-dependent phospholipid binding (TAIR:AT5G10230.1); Has 2379 Blast hits to 1795 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 1841; Fungi - 105; Plants - 294; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).  protein_id AT5G12380.1p  transcript_id AT5G12380.1  protein_id AT5G12380.1p  transcript_id AT5G12380.1  
At5g12390	chr5:004011843	0.0	C/4011843-4011950,4011508-4011637,4011263-4011384,4011112-4011175,4010948-4011027	AT5G12390.1  CDS  gene_syn FIS1B, FISSION 1B  gene FIS1B  function Encodes a protein with similarity to yeast FIS proteins. These membrane anchored proteins bind DRP proteins and function during organelle division. FIS1B is expressed ubiquitously and appears to be involved in peroxisome division.  go_function binding|GO:0005488||IEA  go_component mitochondrion|GO:0005739|18785999|IDA  go_component peroxisome|GO:0005777|18785999|IDA  go_process peroxisome fission|GO:0016559|14730085|IMP  go_process peroxisome fission|GO:0016559|18785999|IMP  product FIS1B (FISSION 1B); binding  note FISSION 1B (FIS1B); FUNCTIONS IN: binding; INVOLVED IN: peroxisome fission; LOCATED IN: mitochondrion, peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide repeat 11 Fission 1 protein (InterPro:IPR016543), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: BIGYIN; binding (TAIR:AT3G57090.1); Has 226 Blast hits to 225 proteins in 103 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 98; Plants - 47; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G12390.1p  transcript_id AT5G12390.1  protein_id AT5G12390.1p  transcript_id AT5G12390.1  
At5g12400	chr5:004013813	0.0	W/4013813-4015269,4015381-4015995,4016514-4017567,4018001-4018283,4018410-4018534,4018852-4019315,4019509-4019537,4020149-4020909	AT5G12400.1  CDS  go_function DNA binding|GO:0003677||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product PHD finger transcription factor, putative  note PHD finger transcription factor, putative; FUNCTIONS IN: protein binding, DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DDT superfamily (InterPro:IPR018501), AT hook, DNA-binding, conserved site (InterPro:IPR017956), DDT family (InterPro:IPR004022), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT5G22760.1); Has 2572 Blast hits to 2322 proteins in 156 species: Archae - 0; Bacteria - 8; Metazoa - 1899; Fungi - 179; Plants - 278; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink).  protein_id AT5G12400.1p  transcript_id AT5G12400.1  protein_id AT5G12400.1p  transcript_id AT5G12400.1  
At5g12410	chr5:004023897	0.0	C/4023897-4023950,4023688-4023807,4022826-4023299,4022570-4022709,4022356-4022476,4022139-4022279,4021974-4022054	AT5G12410.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product THUMP domain-containing protein  note THUMP domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: THUMP (InterPro:IPR004114); Has 2926 Blast hits to 1988 proteins in 205 species: Archae - 10; Bacteria - 67; Metazoa - 1296; Fungi - 226; Plants - 118; Viruses - 74; Other Eukaryotes - 1135 (source: NCBI BLink).  protein_id AT5G12410.1p  transcript_id AT5G12410.1  protein_id AT5G12410.1p  transcript_id AT5G12410.1  
At5g12420	chr5:004026542	0.0	C/4026542-4026715,4025727-4026311,4025575-4025641,4025323-4025435,4025026-4025235,4024812-4024949,4024568-4024723	AT5G12420.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1298 (InterPro:IPR009721), Uncharacterised protein family UPF0089 (InterPro:IPR004255); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16350.1); Has 663 Blast hits to 655 proteins in 93 species: Archae - 4; Bacteria - 532; Metazoa - 5; Fungi - 2; Plants - 108; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT5G12420.1p  transcript_id AT5G12420.1  protein_id AT5G12420.1p  transcript_id AT5G12420.1  
At5g12430	chr5:004032246	0.0	C/4032246-4034086,4031861-4032100,4031475-4031604,4030898-4031050,4030605-4030819,4030447-4030516,4030059-4030265,4029519-4029748,4029140-4029218,4028872-4029009,4028475-4028669	AT5G12430.1  CDS  go_component chloroplast|GO:0009507||IEA  go_function binding|GO:0005488||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding, binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Tetratricopeptide region (InterPro:IPR013026), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G41520.1); Has 19638 Blast hits to 17041 proteins in 1841 species: Archae - 148; Bacteria - 5474; Metazoa - 5128; Fungi - 2024; Plants - 1768; Viruses - 11; Other Eukaryotes - 5085 (source: NCBI BLink).  protein_id AT5G12430.1p  transcript_id AT5G12430.1  protein_id AT5G12430.1p  transcript_id AT5G12430.1  
At5g12440	chr5:004037646	0.0	C/4037646-4038604,4037180-4037356,4036827-4037006,4036626-4036729,4036286-4036528,4035891-4036180	AT5G12440.1  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product nucleic acid binding / nucleotide binding / zinc ion binding  note nucleic acid binding / nucleotide binding / zinc ion binding; FUNCTIONS IN: nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT3G21100.2); Has 107 Blast hits to 107 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G12440.1p  transcript_id AT5G12440.1  protein_id AT5G12440.1p  transcript_id AT5G12440.1  
At5g12450	chr5:004040937	0.0	W/4040937-4041128	AT5G12450.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: syntaxin-related family protein (TAIR:AT1G48390.1); Has 72 Blast hits to 72 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G12450.1p  transcript_id AT5G12450.1  protein_id AT5G12450.1p  transcript_id AT5G12450.1  
At5g12460	chr5:004043057	0.0	W/4043057-4043746,4043863-4044399,4044485-4044583	AT5G12460.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: fringe-related protein (TAIR:AT2G37730.1); Has 355 Blast hits to 351 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 96; Fungi - 121; Plants - 131; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G12460.1p  transcript_id AT5G12460.1  protein_id AT5G12460.1p  transcript_id AT5G12460.1  
At5g12470	chr5:004046742	0.0	C/4046742-4047290,4046470-4046538,4045870-4046001,4045725-4045778,4045564-4045608,4045334-4045473,4045087-4045212,4044950-4044995	AT5G12470.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_component chloroplast inner membrane|GO:0009706|12766230|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40400.2); Has 570 Blast hits to 490 proteins in 89 species: Archae - 0; Bacteria - 92; Metazoa - 134; Fungi - 23; Plants - 222; Viruses - 27; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT5G12470.1p  transcript_id AT5G12470.1  protein_id AT5G12470.1p  transcript_id AT5G12470.1  
At5g12480	chr5:004049520	0.0	C/4049520-4050035,4049305-4049428,4049070-4049213,4048824-4048976,4048637-4048752,4048373-4048540,4048050-4048283,4047817-4047969	AT5G12480.1  CDS  gene_syn CALMODULIN-DOMAIN PROTEIN KINASE 7, CPK7, calmodulin-domain protein kinase 7  gene CPK7  function calmodulin-domain protein kinase CDPK isoform 7 (CPK7)  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  go_function kinase activity|GO:0016301||ISS  product CPK7 (calmodulin-domain protein kinase 7); ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note calmodulin-domain protein kinase 7 (CPK7); FUNCTIONS IN: in 7 functions; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), Tyrosine protein kinase (InterPro:IPR001245), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19); ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G19450.2); Has 93997 Blast hits to 90567 proteins in 2626 species: Archae - 80; Bacteria - 8214; Metazoa - 41337; Fungi - 10929; Plants - 13739; Viruses - 413; Other Eukaryotes - 19285 (source: NCBI BLink).  protein_id AT5G12480.1p  transcript_id AT5G12480.1  protein_id AT5G12480.1p  transcript_id AT5G12480.1  
At5g12480	chr5:004049863	0.0	C/4049863-4050035,4049520-4049580,4049305-4049428,4049070-4049213,4048824-4048976,4048637-4048752,4048373-4048540,4048050-4048283,4047817-4047969	AT5G12480.2  CDS  gene_syn CALMODULIN-DOMAIN PROTEIN KINASE 7, CPK7, calmodulin-domain protein kinase 7  gene CPK7  function calmodulin-domain protein kinase CDPK isoform 7 (CPK7)  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  go_function kinase activity|GO:0016301||ISS  product CPK7 (calmodulin-domain protein kinase 7); ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase  note calmodulin-domain protein kinase 7 (CPK7); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19); ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G19450.2); Has 78449 Blast hits to 75698 proteins in 2438 species: Archae - 54; Bacteria - 6741; Metazoa - 34319; Fungi - 10019; Plants - 10099; Viruses - 331; Other Eukaryotes - 16886 (source: NCBI BLink).  protein_id AT5G12480.2p  transcript_id AT5G12480.2  protein_id AT5G12480.2p  transcript_id AT5G12480.2  
At5g12840	chr5:004052685	0.0	C/4052685-4052961,4052231-4052328,4052008-4052079,4051532-4051696,4051147-4051350	AT5G12840.2  CDS  gene_syn ATHAP2A, EMB2220, EMBRYO DEFECTIVE 2220, HAP2A, NF-YA1, NUCLEAR FACTOR Y, SUBUNIT A1, T24H18.10, T24H18_10  gene NF-YA1  function Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.  go_component CCAAT-binding factor complex|GO:0016602|9662544|ISS  go_component CCAAT-binding factor complex|GO:0016602||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355|9662544|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|17138697|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9662544|IGI  go_function transcription factor activity|GO:0003700||ISS  product NF-YA1 (NUCLEAR FACTOR Y, SUBUNIT A1); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT A1 (NF-YA1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: embryonic development ending in seed dormancy, regulation of transcription, DNA-dependent, regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: CCAAT-binding factor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: NF-YA9 (NUCLEAR FACTOR Y, SUBUNIT A9); specific transcriptional repressor/ transcription factor (TAIR:AT3G20910.1); Has 445 Blast hits to 445 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 88; Plants - 216; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT5G12840.2p  transcript_id AT5G12840.2  protein_id AT5G12840.2p  transcript_id AT5G12840.2  
At5g12840	chr5:004052685	0.0	C/4052685-4052961,4052231-4052328,4052008-4052079,4051532-4051696,4051147-4051350	AT5G12840.4  CDS  gene_syn ATHAP2A, EMB2220, EMBRYO DEFECTIVE 2220, HAP2A, NF-YA1, NUCLEAR FACTOR Y, SUBUNIT A1, T24H18.10, T24H18_10  gene NF-YA1  function Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.  go_component CCAAT-binding factor complex|GO:0016602|9662544|ISS  go_component CCAAT-binding factor complex|GO:0016602||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355|9662544|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|17138697|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9662544|IGI  go_function transcription factor activity|GO:0003700||ISS  product NF-YA1 (NUCLEAR FACTOR Y, SUBUNIT A1); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT A1 (NF-YA1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: embryonic development ending in seed dormancy, regulation of transcription, DNA-dependent, regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: CCAAT-binding factor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: NF-YA9 (NUCLEAR FACTOR Y, SUBUNIT A9); specific transcriptional repressor/ transcription factor (TAIR:AT3G20910.1); Has 445 Blast hits to 445 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 88; Plants - 216; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT5G12840.4p  transcript_id AT5G12840.4  protein_id AT5G12840.4p  transcript_id AT5G12840.4  
At5g12840	chr5:004052685	0.0	C/4052685-4052961,4052231-4052331,4052008-4052079,4051532-4051696,4051147-4051350	AT5G12840.1  CDS  gene_syn ATHAP2A, EMB2220, EMBRYO DEFECTIVE 2220, HAP2A, NF-YA1, NUCLEAR FACTOR Y, SUBUNIT A1, T24H18.10, T24H18_10  gene NF-YA1  function Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.  go_component CCAAT-binding factor complex|GO:0016602|9662544|ISS  go_component CCAAT-binding factor complex|GO:0016602||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355|9662544|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|17138697|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9662544|IGI  go_function transcription factor activity|GO:0003700||ISS  product NF-YA1 (NUCLEAR FACTOR Y, SUBUNIT A1); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT A1 (NF-YA1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: embryonic development ending in seed dormancy, regulation of transcription, DNA-dependent, regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: CCAAT-binding factor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: NF-YA9 (NUCLEAR FACTOR Y, SUBUNIT A9); specific transcriptional repressor/ transcription factor (TAIR:AT3G20910.1); Has 447 Blast hits to 447 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 128; Fungi - 88; Plants - 216; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT5G12840.1p  transcript_id AT5G12840.1  protein_id AT5G12840.1p  transcript_id AT5G12840.1  
At5g12840	chr5:004052685	0.0	C/4052685-4052961,4052231-4052331,4052008-4052079,4051532-4051696,4051147-4051350	AT5G12840.3  CDS  gene_syn ATHAP2A, EMB2220, EMBRYO DEFECTIVE 2220, HAP2A, NF-YA1, NUCLEAR FACTOR Y, SUBUNIT A1, T24H18.10, T24H18_10  gene NF-YA1  function Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.  go_component CCAAT-binding factor complex|GO:0016602|9662544|ISS  go_component CCAAT-binding factor complex|GO:0016602||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355|9662544|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|17138697|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9662544|IGI  go_function transcription factor activity|GO:0003700||ISS  product NF-YA1 (NUCLEAR FACTOR Y, SUBUNIT A1); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT A1 (NF-YA1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: embryonic development ending in seed dormancy, regulation of transcription, DNA-dependent, regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: CCAAT-binding factor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: NF-YA9 (NUCLEAR FACTOR Y, SUBUNIT A9); specific transcriptional repressor/ transcription factor (TAIR:AT3G20910.1); Has 447 Blast hits to 447 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 128; Fungi - 88; Plants - 216; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT5G12840.3p  transcript_id AT5G12840.3  protein_id AT5G12840.3p  transcript_id AT5G12840.3  
At5g12850	chr5:004057068	0.0	W/4057068-4059188	AT5G12850.1  CDS  gene_syn T24H18.20, T24H18_20  go_component cytoplasm|GO:0005737|15610358|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product zinc finger (CCCH-type) family protein  note zinc finger (CCCH-type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein (TAIR:AT2G41900.1); Has 2352 Blast hits to 1824 proteins in 179 species: Archae - 4; Bacteria - 93; Metazoa - 1168; Fungi - 124; Plants - 283; Viruses - 12; Other Eukaryotes - 668 (source: NCBI BLink).  protein_id AT5G12850.1p  transcript_id AT5G12850.1  protein_id AT5G12850.1p  transcript_id AT5G12850.1  
At5g12860	chr5:004060831	0.0	C/4060831-4061919,4060380-4060601,4059927-4060289	AT5G12860.1  CDS  gene_syn 2-OXOGLUTARATE/MALATE TRANSLOCATOR, DiT1, T24H18.30, T24H18_30, dicarboxylate transporter 1  gene DiT1  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_process response to nematode|GO:0009624|16478044|IEP  go_process malate transport|GO:0015743||ISS  go_function oxoglutarate:malate antiporter activity|GO:0015367||ISS  product DiT1 (dicarboxylate transporter 1); oxoglutarate:malate antiporter  note dicarboxylate transporter 1 (DiT1); FUNCTIONS IN: oxoglutarate:malate antiporter activity; INVOLVED IN: N-terminal protein myristoylation, malate transport, response to nematode; LOCATED IN: mitochondrion, chloroplast, plastid, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sodium/sulphate symporter (InterPro:IPR001898); BEST Arabidopsis thaliana protein match is: DIT2.1 (DICARBOXYLATE TRANSPORT 2.1); oxoglutarate:malate antiporter (TAIR:AT5G64290.1); Has 3501 Blast hits to 3480 proteins in 730 species: Archae - 45; Bacteria - 2714; Metazoa - 82; Fungi - 3; Plants - 82; Viruses - 1; Other Eukaryotes - 574 (source: NCBI BLink).  protein_id AT5G12860.1p  transcript_id AT5G12860.1  protein_id AT5G12860.1p  transcript_id AT5G12860.1  
At5g12860	chr5:004060831	0.0	C/4060831-4061919,4060380-4060601,4059931-4060289,4059850-4059850	AT5G12860.2  CDS  gene_syn 2-OXOGLUTARATE/MALATE TRANSLOCATOR, DiT1, T24H18.30, T24H18_30, dicarboxylate transporter 1  gene DiT1  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_process response to nematode|GO:0009624|16478044|IEP  go_process malate transport|GO:0015743||ISS  go_function oxoglutarate:malate antiporter activity|GO:0015367||ISS  product DiT1 (dicarboxylate transporter 1); oxoglutarate:malate antiporter  note dicarboxylate transporter 1 (DiT1); FUNCTIONS IN: oxoglutarate:malate antiporter activity; INVOLVED IN: N-terminal protein myristoylation, malate transport, response to nematode; LOCATED IN: mitochondrion, chloroplast, plastid, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sodium/sulphate symporter (InterPro:IPR001898); BEST Arabidopsis thaliana protein match is: DIT2.1 (DICARBOXYLATE TRANSPORT 2.1); oxoglutarate:malate antiporter (TAIR:AT5G64290.1); Has 317 Blast hits to 315 proteins in 110 species: Archae - 7; Bacteria - 257; Metazoa - 44; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G12860.2p  transcript_id AT5G12860.2  protein_id AT5G12860.2p  transcript_id AT5G12860.2  
At5g12870	chr5:004064659	0.0	C/4064659-4064939,4062939-4063500	AT5G12870.1  CDS  gene_syn ATMYB46, MYB DOMAIN PROTEIN 46, MYB46, T24H18.40, T24H18_40  gene MYB46  function Member of the R2R3 factor gene family.  go_component nucleus|GO:0005634|16581911|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process secondary cell wall biogenesis|GO:0009834|17890373|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|17890373|IDA  product MYB46 (MYB DOMAIN PROTEIN 46); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 46 (MYB46); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: secondary cell wall biogenesis, regulation of transcription, DNA-dependent, response to salicylic acid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB83 (myb domain protein 83); DNA binding / transcription factor (TAIR:AT3G08500.1); Has 6239 Blast hits to 5800 proteins in 352 species: Archae - 0; Bacteria - 0; Metazoa - 639; Fungi - 277; Plants - 3754; Viruses - 4; Other Eukaryotes - 1565 (source: NCBI BLink).  protein_id AT5G12870.1p  transcript_id AT5G12870.1  protein_id AT5G12870.1p  transcript_id AT5G12870.1  
At5g12880	chr5:004068714	0.0	C/4068714-4068935	AT5G12880.1  CDS  gene_syn T24H18.50, T24H18_50  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product proline-rich family protein  note proline-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G12880.1p  transcript_id AT5G12880.1  protein_id AT5G12880.1p  transcript_id AT5G12880.1  
At5g12890	chr5:004069658	0.0	C/4069658-4071124	AT5G12890.1  CDS  gene_syn T24H18.60, T24H18_60  go_process metabolic process|GO:0008152||IEA  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT2G36780.1); Has 4978 Blast hits to 4939 proteins in 299 species: Archae - 0; Bacteria - 92; Metazoa - 2112; Fungi - 11; Plants - 2661; Viruses - 72; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT5G12890.1p  transcript_id AT5G12890.1  protein_id AT5G12890.1p  transcript_id AT5G12890.1  
At5g12900	chr5:004074227	0.0	C/4074227-4074445,4072151-4073620	AT5G12900.1  CDS  gene_syn T24H18.70, T24H18_70  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12330.1); Has 278 Blast hits to 272 proteins in 46 species: Archae - 0; Bacteria - 26; Metazoa - 55; Fungi - 10; Plants - 146; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT5G12900.1p  transcript_id AT5G12900.1  protein_id AT5G12900.1p  transcript_id AT5G12900.1  
At5g12910	chr5:004077162	0.0	W/4077162-4077557	AT5G12910.1  CDS  gene_syn T24H18.80, T24H18_80  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product histone H3, putative  note histone H3, putative; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: shoot apex, flower, inflorescence, root, leaf; EXPRESSED DURING: seedling growth, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H3 (TAIR:AT5G65360.1); Has 10149 Blast hits to 10146 proteins in 5293 species: Archae - 0; Bacteria - 0; Metazoa - 7378; Fungi - 1302; Plants - 993; Viruses - 0; Other Eukaryotes - 476 (source: NCBI BLink).  protein_id AT5G12910.1p  transcript_id AT5G12910.1  protein_id AT5G12910.1p  transcript_id AT5G12910.1  
At5g12920	chr5:004082551	0.0	C/4082551-4082585,4082370-4082492,4082231-4082284,4081833-4081929,4081674-4081727,4081555-4081592,4081275-4081404,4081105-4081192,4080550-4080647,4080376-4080450,4079876-4079967,4079658-4079787,4079399-4079527,4079245-4079310,4078965-4079056,4078771-4078836,4078614-4078677,4078428-4078516,4078205-4078331,4077917-4077988	AT5G12920.2  CDS  gene_syn T24H18.100, T24H18_100  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40/YVTN repeat-like (InterPro:IPR015943).  protein_id AT5G12920.2p  transcript_id AT5G12920.2  protein_id AT5G12920.2p  transcript_id AT5G12920.2  
At5g12920	chr5:004082551	0.0	C/4082551-4082585,4082400-4082492,4082003-4082077,4081833-4081929,4081674-4081727,4081555-4081592,4081371-4081404,4081105-4081192,4080550-4080647,4080376-4080450,4079876-4079967,4079658-4079787,4079399-4079527,4079245-4079310,4078965-4079056,4078771-4078836,4078614-4078677,4078428-4078516,4078205-4078331,4077917-4077988	AT5G12920.1  CDS  gene_syn T24H18.100, T24H18_100  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40/YVTN repeat-like (InterPro:IPR015943); Has 28 Blast hits to 28 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 6; Fungi - 2; Plants - 16; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G12920.1p  transcript_id AT5G12920.1  protein_id AT5G12920.1p  transcript_id AT5G12920.1  
At5g12930	chr5:004084860	0.0	C/4084860-4085222,4084297-4084509,4084094-4084198,4083882-4084001,4083706-4083792,4083155-4083586	AT5G12930.1  CDS  gene_syn T24H18.90, T24H18_90  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; Has 79 Blast hits to 73 proteins in 31 species: Archae - 5; Bacteria - 4; Metazoa - 29; Fungi - 4; Plants - 22; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT5G12930.1p  transcript_id AT5G12930.1  protein_id AT5G12930.1p  transcript_id AT5G12930.1  
At5g12940	chr5:004087782	0.0	W/4087782-4088897	AT5G12940.1  CDS  gene_syn T24H18.110, T24H18_110  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT3G20820.1); Has 47045 Blast hits to 16978 proteins in 730 species: Archae - 15; Bacteria - 2431; Metazoa - 14572; Fungi - 447; Plants - 26641; Viruses - 0; Other Eukaryotes - 2939 (source: NCBI BLink).  protein_id AT5G12940.1p  transcript_id AT5G12940.1  protein_id AT5G12940.1p  transcript_id AT5G12940.1  
At5g12950	chr5:004093117	0.0	W/4093117-4093630,4093838-4094040,4094130-4094327,4094415-4094486,4094567-4094662,4094746-4094825,4094917-4094992,4095071-4095281,4095378-4095577,4095651-4095756,4095858-4095947,4096067-4096806	AT5G12950.1  CDS  gene_syn T24H18.120, T24H18_120  go_component vacuole|GO:0005773|15539469|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_function catalytic activity|GO:0003824||IEA  product catalytic  note catalytic; FUNCTIONS IN: catalytic activity; LOCATED IN: vacuole, plant-type cell wall; EXPRESSED IN: stem, male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1680 (InterPro:IPR012878), Six-hairpin glycosidase-like (InterPro:IPR008928); BEST Arabidopsis thaliana protein match is: catalytic (TAIR:AT5G12960.1); Has 547 Blast hits to 538 proteins in 165 species: Archae - 2; Bacteria - 444; Metazoa - 0; Fungi - 19; Plants - 38; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT5G12950.1p  transcript_id AT5G12950.1  protein_id AT5G12950.1p  transcript_id AT5G12950.1  
At5g12960	chr5:004097788	0.0	W/4097788-4098313,4098550-4098752,4098839-4099036,4099124-4099195,4099276-4099371,4099455-4099534,4099627-4099702,4099785-4099995,4100096-4100295,4100369-4100474,4100576-4100665,4100779-4101518	AT5G12960.1  CDS  gene_syn T24H18.130, T24H18_130  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  product catalytic  note catalytic; FUNCTIONS IN: catalytic activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1680 (InterPro:IPR012878), Six-hairpin glycosidase-like (InterPro:IPR008928); BEST Arabidopsis thaliana protein match is: catalytic (TAIR:AT5G12950.1); Has 549 Blast hits to 540 proteins in 168 species: Archae - 2; Bacteria - 442; Metazoa - 2; Fungi - 19; Plants - 41; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT5G12960.1p  transcript_id AT5G12960.1  protein_id AT5G12960.1p  transcript_id AT5G12960.1  
At5g12970	chr5:004102992	0.0	W/4102992-4105301	AT5G12970.1  CDS  gene_syn T24H18.140, T24H18_140  go_process tryptophan biosynthetic process|GO:0000162||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: tryptophan biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal, plant (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT3G57880.1); Has 4013 Blast hits to 2805 proteins in 173 species: Archae - 0; Bacteria - 0; Metazoa - 2770; Fungi - 132; Plants - 819; Viruses - 0; Other Eukaryotes - 292 (source: NCBI BLink).  protein_id AT5G12970.1p  transcript_id AT5G12970.1  protein_id AT5G12970.1p  transcript_id AT5G12970.1  
At5g12980	chr5:004107972	0.0	C/4107972-4108139,4107459-4107530,4107194-4107283,4107029-4107071,4106689-4106795,4106369-4106464,4105965-4106155,4105812-4105881,4105562-4105660	AT5G12980.1  CDS  gene_syn T24H18.150, T24H18_150  go_process multicellular organismal development|GO:0007275||ISS  go_function molecular_function|GO:0003674||ND  product rcd1-like cell differentiation protein, putative  note rcd1-like cell differentiation protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: multicellular organismal development; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cell differentiation, Rcd1-like (InterPro:IPR007216); BEST Arabidopsis thaliana protein match is: rcd1-like cell differentiation protein, putative (TAIR:AT3G20800.1); Has 356 Blast hits to 353 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 140; Fungi - 87; Plants - 65; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT5G12980.1p  transcript_id AT5G12980.1  protein_id AT5G12980.1p  transcript_id AT5G12980.1  
At5g12990	chr5:004109675	0.0	C/4109675-4109768,4109529-4109575,4109234-4109335	AT5G12990.1  CDS  gene_syn CLAVATA3/ESR-RELATED 40, CLE40, T24H18.160, T24H18_160  gene CLE40  function Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.  go_component apoplast|GO:0048046|11457943|RCA  go_process cell fate specification|GO:0001708|16055633|IMP  go_process signal transduction|GO:0007165||ISS  go_function receptor binding|GO:0005102||ISS  go_function protein binding|GO:0005515|11457943|ISS  product CLE40 (CLAVATA3/ESR-RELATED 40); protein binding / receptor binding  note CLAVATA3/ESR-RELATED 40 (CLE40); FUNCTIONS IN: protein binding, receptor binding; INVOLVED IN: cell fate specification, signal transduction; LOCATED IN: apoplast; EXPRESSED IN: shoot apex, flower, seed, stamen, leaf; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G12990.1p  transcript_id AT5G12990.1  protein_id AT5G12990.1p  transcript_id AT5G12990.1  
At5g13000	chr5:004121007	0.0	C/4121007-4121202,4120821-4120921,4120570-4120694,4120366-4120459,4120172-4120282,4119981-4120097,4119719-4119811,4119432-4119559,4119174-4119300,4118630-4118767,4118466-4118542,4118282-4118375,4117997-4118125,4117782-4117896,4117454-4117702,4117215-4117329,4117053-4117113,4116814-4116895,4116679-4116728,4116506-4116592,4116253-4116393,4116085-4116179,4115902-4115986,4115670-4115830,4115391-4115532,4115171-4115309,4114998-4115122,4114760-4114911,4114139-4114449,4113984-4114052,4113697-4113886,4113473-4113623,4112998-4113117,4112791-4112909,4112609-4112692,4112401-4112513,4112078-4112307,4111196-4111993,4111066-4111116,4110793-4110978,4110445-4110693	AT5G13000.1  CDS  gene_syn ATGSL12, T24H18.170, T24H18_170, glucan synthase-like 12, gsl12  gene ATGSL12  function encodes a gene similar to callose synthase  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process 1,3-beta-glucan biosynthetic process|GO:0006075||IEA  go_component 1,3-beta-glucan synthase complex|GO:0000148||ISS  go_process 1,3-beta-glucan biosynthetic process|GO:0006075||ISS  go_function 1,3-beta-glucan synthase activity|GO:0003843||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product ATGSL12 (glucan synthase-like 12); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups  note glucan synthase-like 12 (ATGSL12); FUNCTIONS IN: transferase activity, transferring glycosyl groups, 1,3-beta-glucan synthase activity; INVOLVED IN: 1,3-beta-glucan biosynthetic process; LOCATED IN: 1,3-beta-glucan synthase complex, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 48 (InterPro:IPR003440); BEST Arabidopsis thaliana protein match is: CALS1 (CALLOSE SYNTHASE 1); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups (TAIR:AT1G05570.1); Has 895 Blast hits to 677 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 537; Plants - 266; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT5G13000.1p  transcript_id AT5G13000.1  protein_id AT5G13000.1p  transcript_id AT5G13000.1  
At5g13000	chr5:004121007	0.0	C/4121007-4121202,4120821-4120921,4120570-4120694,4120366-4120459,4120172-4120282,4119981-4120097,4119719-4119811,4119432-4119559,4119174-4119300,4118630-4118767,4118466-4118542,4118282-4118375,4117997-4118125,4117782-4117896,4117454-4117702,4117215-4117329,4117053-4117113,4116814-4116895,4116679-4116728,4116506-4116592,4116253-4116393,4116085-4116179,4115902-4115986,4115670-4115830,4115391-4115532,4115171-4115309,4114998-4115122,4114760-4114911,4114139-4114449,4113984-4114052,4113697-4113886,4113527-4113623,4112998-4113117,4112791-4112909,4112609-4112692,4112401-4112513,4112078-4112307,4111196-4111993,4111066-4111116,4110793-4110978,4110445-4110693	AT5G13000.2  CDS  gene_syn ATGSL12, T24H18.170, T24H18_170, glucan synthase-like 12, gsl12  gene ATGSL12  function encodes a gene similar to callose synthase  go_process 1,3-beta-glucan biosynthetic process|GO:0006075||IEA  go_component 1,3-beta-glucan synthase complex|GO:0000148||ISS  go_process 1,3-beta-glucan biosynthetic process|GO:0006075||ISS  go_function 1,3-beta-glucan synthase activity|GO:0003843||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product ATGSL12 (glucan synthase-like 12); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups  note glucan synthase-like 12 (ATGSL12); FUNCTIONS IN: transferase activity, transferring glycosyl groups, 1,3-beta-glucan synthase activity; INVOLVED IN: 1,3-beta-glucan biosynthetic process; LOCATED IN: 1,3-beta-glucan synthase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 48 (InterPro:IPR003440); BEST Arabidopsis thaliana protein match is: CALS1 (CALLOSE SYNTHASE 1); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups (TAIR:AT1G05570.1).  protein_id AT5G13000.2p  transcript_id AT5G13000.2  protein_id AT5G13000.2p  transcript_id AT5G13000.2  
At5g13010	chr5:004122747	0.0	W/4122747-4122752,4122862-4122973,4123058-4123270,4123429-4123466,4123656-4123835,4124032-4124173,4124279-4124424,4124608-4124708,4124861-4124969,4125267-4125444,4125551-4125780,4125863-4126039,4126169-4126240,4126353-4126517,4126676-4126737,4126825-4126977,4127064-4128660	AT5G13010.1  CDS  gene_syn EMB3011, T24H18.180, T24H18_180, embryo defective 3011  gene EMB3011  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function RNA helicase activity|GO:0003724||ISS  product EMB3011 (embryo defective 3011); ATP binding / RNA helicase/ helicase/ nucleic acid binding  note embryo defective 3011 (EMB3011); FUNCTIONS IN: RNA helicase activity, helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated region (InterPro:IPR007502), Region of unknown function DUF1605 (InterPro:IPR011709), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP-dependent RNA helicase, putative (TAIR:AT3G26560.1); Has 7285 Blast hits to 6618 proteins in 979 species: Archae - 6; Bacteria - 1991; Metazoa - 2135; Fungi - 867; Plants - 393; Viruses - 401; Other Eukaryotes - 1492 (source: NCBI BLink).  protein_id AT5G13010.1p  transcript_id AT5G13010.1  protein_id AT5G13010.1p  transcript_id AT5G13010.1  
At5g13020	chr5:004132062	0.0	C/4132062-4132089,4131743-4131948,4131520-4131629,4131207-4131435,4130926-4131099,4130766-4130834,4130003-4130236,4129862-4129930,4129691-4129765	AT5G13020.1  CDS  gene_syn T19L5.3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product emsy N terminus domain-containing protein / ENT domain-containing protein  note emsy N terminus domain-containing protein / ENT domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), ENT (InterPro:IPR005491); BEST Arabidopsis thaliana protein match is: emsy N terminus domain-containing protein / ENT domain-containing protein (TAIR:AT2G44440.1); Has 252 Blast hits to 239 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 73; Fungi - 6; Plants - 172; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G13020.1p  transcript_id AT5G13020.1  protein_id AT5G13020.1p  transcript_id AT5G13020.1  
At5g13030	chr5:004133216	0.0	W/4133216-4133566,4133879-4133988,4134288-4134344,4134434-4134733,4134984-4135231,4135378-4135684,4135779-4136052,4136207-4136461	AT5G13030.1  CDS  gene_syn AT5G13040, T19L5.1  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0061 (InterPro:IPR003846); Has 4055 Blast hits to 4018 proteins in 759 species: Archae - 4; Bacteria - 1451; Metazoa - 102; Fungi - 81; Plants - 27; Viruses - 0; Other Eukaryotes - 2390 (source: NCBI BLink).  protein_id AT5G13030.1p  transcript_id AT5G13030.1  protein_id AT5G13030.1p  transcript_id AT5G13030.1  
At5g13050	chr5:004138465	0.0	C/4138465-4138711,4138251-4138385,4137817-4137975,4137677-4137718,4137549-4137594,4137211-4137281,4137000-4137126,4136912-4136918	AT5G13050.1  CDS  gene_syn 5-CHO-THF CYCLOLIGASE, 5-FCL, 5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE, T19L5.10, T19L5_10  gene 5-FCL  function 5-Formyltetrahydrofolate cycloligase (5-CHO-THF cycloligase - AT5G13050.1) regulates/influences under photorespiratory conditions the activity of another gene product, i.e. serine hydroxymethyltransferase (SHMT) due to accumulating amounts of 5-Formyltetrahydrofolate  go_component mitochondrion|GO:0005739|12207015|IDA  go_process tetrahydrofolate metabolic process|GO:0046653|15888445|IMP  go_function 5-formyltetrahydrofolate cyclo-ligase activity|GO:0030272|12207015|IDA  go_function 5-formyltetrahydrofolate cyclo-ligase activity|GO:0030272|12207015|IGI  product 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE); 5-formyltetrahydrofolate cyclo-ligase  note 5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE (5-FCL); FUNCTIONS IN: 5-formyltetrahydrofolate cyclo-ligase activity; INVOLVED IN: tetrahydrofolate metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 5-formyltetrahydrofolate cyclo-ligase (InterPro:IPR002698); Has 2726 Blast hits to 2726 proteins in 935 species: Archae - 16; Bacteria - 1584; Metazoa - 87; Fungi - 82; Plants - 21; Viruses - 0; Other Eukaryotes - 936 (source: NCBI BLink).  protein_id AT5G13050.1p  transcript_id AT5G13050.1  protein_id AT5G13050.1p  transcript_id AT5G13050.1  
At5g13050	chr5:004138465	0.0	C/4138465-4138711,4138251-4138385,4137817-4137975,4137677-4137718,4137553-4137594,4137262-4137281	AT5G13050.2  CDS  gene_syn 5-CHO-THF CYCLOLIGASE, 5-FCL, 5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE, T19L5.10, T19L5_10  gene 5-FCL  function 5-Formyltetrahydrofolate cycloligase (5-CHO-THF cycloligase - AT5G13050.1) regulates/influences under photorespiratory conditions the activity of another gene product, i.e. serine hydroxymethyltransferase (SHMT) due to accumulating amounts of 5-Formyltetrahydrofolate  go_component mitochondrion|GO:0005739|12207015|IDA  go_process tetrahydrofolate metabolic process|GO:0046653|15888445|IMP  go_function 5-formyltetrahydrofolate cyclo-ligase activity|GO:0030272|12207015|IDA  go_function 5-formyltetrahydrofolate cyclo-ligase activity|GO:0030272|12207015|IGI  product 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE); 5-formyltetrahydrofolate cyclo-ligase  note 5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE (5-FCL); FUNCTIONS IN: 5-formyltetrahydrofolate cyclo-ligase activity; INVOLVED IN: tetrahydrofolate metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 5-formyltetrahydrofolate cyclo-ligase (InterPro:IPR002698); Has 643 Blast hits to 643 proteins in 308 species: Archae - 4; Bacteria - 464; Metazoa - 81; Fungi - 34; Plants - 21; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT5G13050.2p  transcript_id AT5G13050.2  protein_id AT5G13050.2p  transcript_id AT5G13050.2  
At5g13060	chr5:004142958	0.0	W/4142958-4143291,4143532-4143689,4143858-4144030,4144111-4144231,4144307-4144381,4144461-4144555,4144657-4144732,4144874-4144981,4145105-4145233,4145328-4145396,4145476-4145535,4145620-4145743,4145833-4145972,4146060-4146123,4146208-4146287,4146364-4146546,4146639-4146763,4146853-4146952	AT5G13060.1  CDS  gene_syn ABAP1, ARMADILLO BTB ARABIDOPSIS PROTEIN 1, T19L5.20, T19L5_20  gene ABAP1  function Encodes a novel Armadillo BTB protein that intreacts with the pre-replication complex and several transcription factors. Overexpression results in decreased cell proliferation and loss of function results in increased cell proliferation suggesting a role in negative regulation of cellular proliferation.  go_component DNA replication preinitiation complex|GO:0031261|18818695|IDA  go_process DNA-dependent DNA replication|GO:0006261|18818695|TAS  go_process regulation of cell proliferation|GO:0042127|18818695|IMP  go_function protein binding|GO:0005515|15659098|IPI  go_function protein binding|GO:0005515||ISS  product ABAP1 (ARMADILLO BTB ARABIDOPSIS PROTEIN 1); protein binding  note ARMADILLO BTB ARABIDOPSIS PROTEIN 1 (ABAP1); FUNCTIONS IN: protein binding; INVOLVED IN: regulation of cell proliferation, DNA-dependent DNA replication; LOCATED IN: DNA replication preinitiation complex; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), Armadillo-like helical (InterPro:IPR011989), BTB/POZ fold (InterPro:IPR011333), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing protein (TAIR:AT5G19330.1); Has 12069 Blast hits to 9577 proteins in 279 species: Archae - 8; Bacteria - 57; Metazoa - 8657; Fungi - 583; Plants - 1916; Viruses - 75; Other Eukaryotes - 773 (source: NCBI BLink).  protein_id AT5G13060.1p  transcript_id AT5G13060.1  protein_id AT5G13060.1p  transcript_id AT5G13060.1  
At5g13070	chr5:004148216	0.0	W/4148216-4148503,4148799-4149062	AT5G13070.1  CDS  gene_syn T19L5.30, T19L5_30  product MSF1-like family protein  note MSF1-like family protein; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PRELI/MSF1 (InterPro:IPR006797); Has 651 Blast hits to 651 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 458; Fungi - 150; Plants - 18; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT5G13070.1p  transcript_id AT5G13070.1  protein_id AT5G13070.1p  transcript_id AT5G13070.1  
At5g13080	chr5:004150760	0.0	C/4150760-4151019,4149928-4150105	AT5G13080.1  CDS  gene_syn AtWRKY75, T19L5.40, T19L5_40, WRKY75  gene WRKY75  function WRKY75 is one of several transcription factors induced during Pi deprivation. It is nuclear localized and regulated differentially during Pi starvation. RNAi mediated suppression of WRKY75 made the plants more susceptible to Pi stress as indicated by the higher accumulation of anthocyanin during Pi starvation.  go_component nucleus|GO:0005634|17322336|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process regulation of response to nutrient levels|GO:0032107|17322336|IMP  go_process regulation of transcription in response to stress|GO:0043620|17322336|IMP  go_process lateral root development|GO:0048527|17322336|IMP  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY75; transcription factor  note WRKY75; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription in response to stress, regulation of response to nutrient levels, regulation of transcription, DNA-dependent, lateral root development; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY45; transcription factor (TAIR:AT3G01970.1); Has 2020 Blast hits to 1728 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2005; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT5G13080.1p  transcript_id AT5G13080.1  protein_id AT5G13080.1p  transcript_id AT5G13080.1  
At5g13090	chr5:004153758	0.0	C/4153758-4154567	AT5G13090.1  CDS  gene_syn T19L5.50, T19L5_50  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24270.1); Has 69 Blast hits to 68 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 8; Plants - 48; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G13090.1p  transcript_id AT5G13090.1  protein_id AT5G13090.1p  transcript_id AT5G13090.1  
At5g13100	chr5:004156789	0.0	W/4156789-4157402,4157598-4157838,4157935-4158052,4158144-4158235	AT5G13100.1  CDS  gene_syn T19L5.60, T19L5_60  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 16 Blast hits to 16 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G13100.1p  transcript_id AT5G13100.1  protein_id AT5G13100.1p  transcript_id AT5G13100.1  
At5g13110	chr5:004158952	0.0	W/4158952-4159144,4159329-4159558,4159671-4159765,4159902-4160016,4160109-4160314,4160453-4160602,4160694-4160814,4160892-4161121,4161190-4161640	AT5G13110.1  CDS  gene_syn G6PD2, GLUCOSE-6-PHOSPHATE DEHYDROGENASE 2, T19L5.70, T19L5_70  gene G6PD2  function Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is most highly expressed in root.  go_component chloroplast|GO:0009507|15634201|ISS  go_process glucose metabolic process|GO:0006006|15634201|IDA  go_process glucose metabolic process|GO:0006006||ISS  go_process pentose-phosphate shunt, oxidative branch|GO:0009051|15634201|IDA  go_function glucose-6-phosphate dehydrogenase activity|GO:0004345|15634201|IDA  go_function glucose-6-phosphate dehydrogenase activity|GO:0004345||ISS  product G6PD2 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 2); glucose-6-phosphate dehydrogenase  note GLUCOSE-6-PHOSPHATE DEHYDROGENASE 2 (G6PD2); FUNCTIONS IN: glucose-6-phosphate dehydrogenase activity; INVOLVED IN: pentose-phosphate shunt, oxidative branch, glucose metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose-6-phosphate dehydrogenase (InterPro:IPR001282); BEST Arabidopsis thaliana protein match is: G6PD3 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 3); glucose-6-phosphate dehydrogenase (TAIR:AT1G24280.1); Has 5517 Blast hits to 5500 proteins in 1289 species: Archae - 0; Bacteria - 3302; Metazoa - 673; Fungi - 122; Plants - 281; Viruses - 2; Other Eukaryotes - 1137 (source: NCBI BLink).  protein_id AT5G13110.1p  transcript_id AT5G13110.1  protein_id AT5G13110.1p  transcript_id AT5G13110.1  
At5g13120	chr5:004164697	0.0	C/4164697-4164720,4164391-4164603,4164004-4164246,4163366-4163420,4163086-4163171,4162714-4162872	AT5G13120.1  CDS  gene_syn T19L5.80, T19L5_80  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||IEA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_process protein folding|GO:0006457||ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein  note peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4) (TAIR:AT3G62030.2); Has 11942 Blast hits to 11897 proteins in 1532 species: Archae - 82; Bacteria - 3798; Metazoa - 2408; Fungi - 958; Plants - 745; Viruses - 4; Other Eukaryotes - 3947 (source: NCBI BLink).  protein_id AT5G13120.1p  transcript_id AT5G13120.1  protein_id AT5G13120.1p  transcript_id AT5G13120.1  
At5g13130	chr5:004166755	0.0	W/4166755-4167034,4167121-4167233,4167388-4167562,4167651-4167735,4167821-4167896,4167988-4168116,4168189-4168287,4168387-4168488,4168584-4168742,4168830-4168925,4168997-4169160,4169251-4169440,4169517-4169596,4169681-4169795,4169881-4169952,4170042-4170164,4170256-4170324	AT5G13130.1  CDS  gene_syn T19L5.90, T19L5_90  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product ATP binding  note ATP binding; FUNCTIONS IN: ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: ATP-binding region, ATPase-like (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: ATP-binding region, ATPase-like domain-containing protein (TAIR:AT4G24970.1); Has 1196 Blast hits to 1057 proteins in 191 species: Archae - 5; Bacteria - 84; Metazoa - 474; Fungi - 83; Plants - 113; Viruses - 107; Other Eukaryotes - 330 (source: NCBI BLink).  protein_id AT5G13130.1p  transcript_id AT5G13130.1  protein_id AT5G13130.1p  transcript_id AT5G13130.1  
At5g13140	chr5:004171555	0.0	C/4171555-4171744,4170688-4171301	AT5G13140.1  CDS  gene_syn T19L5.100, T19L5_100  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen and extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26960.1); Has 90 Blast hits to 85 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G13140.1p  transcript_id AT5G13140.1  protein_id AT5G13140.1p  transcript_id AT5G13140.1  
At5g13150	chr5:004172969	0.0	C/4172969-4174930	AT5G13150.1  CDS  gene_syn ATEXO70C1, T19L5.110, T19L5_110, exocyst subunit EXO70 family protein C1  gene ATEXO70C1  function A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.  go_component exocyst|GO:0000145||IEA  go_process exocytosis|GO:0006887||IEA  go_component exocyst|GO:0000145||ISS  go_process vesicle docking during exocytosis|GO:0006904||ISS  go_function protein binding|GO:0005515||ISS  product ATEXO70C1 (exocyst subunit EXO70 family protein C1); protein binding  note exocyst subunit EXO70 family protein C1 (ATEXO70C1); FUNCTIONS IN: protein binding; INVOLVED IN: exocytosis, vesicle docking during exocytosis; LOCATED IN: exocyst; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: ATEXO70C2 (exocyst subunit EXO70 family protein C2); protein binding (TAIR:AT5G13990.1); Has 1026 Blast hits to 1004 proteins in 122 species: Archae - 0; Bacteria - 8; Metazoa - 137; Fungi - 102; Plants - 378; Viruses - 0; Other Eukaryotes - 401 (source: NCBI BLink).  protein_id AT5G13150.1p  transcript_id AT5G13150.1  protein_id AT5G13150.1p  transcript_id AT5G13150.1  
At5g13160	chr5:004176854	0.0	W/4176854-4176980,4177480-4177682,4178290-4178479,4178726-4179117,4179224-4179682	AT5G13160.1  CDS  gene_syn PBS1, T19L5.120, T19L5_120, avrPphB susceptible 1  gene PBS1  function Mutant is defective in perception of Pseudomonas syringae avirulence gene avrPphB. Encodes a putative serine-threonine kinase.  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component microsome|GO:0005792||NAS  go_process defense response|GO:0006952|11359614|TAS  go_process defense response to bacterium, incompatible interaction|GO:0009816|10224270|IMP  go_process protein amino acid autophosphorylation|GO:0046777|17277084|IDA  go_function protein serine/threonine kinase activity|GO:0004674|11359614|ISS  go_function kinase activity|GO:0016301||ISS  product PBS1 (avrPphB susceptible 1); kinase/ protein serine/threonine kinase  note avrPphB susceptible 1 (PBS1); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid autophosphorylation, defense response to bacterium, incompatible interaction, N-terminal protein myristoylation, defense response; LOCATED IN: microsome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G18610.1); Has 82983 Blast hits to 82027 proteins in 2953 species: Archae - 50; Bacteria - 7501; Metazoa - 36533; Fungi - 6388; Plants - 18666; Viruses - 324; Other Eukaryotes - 13521 (source: NCBI BLink).  protein_id AT5G13160.1p  transcript_id AT5G13160.1  protein_id AT5G13160.1p  transcript_id AT5G13160.1  
At5g13170	chr5:004183120	0.0	C/4183120-4183171,4182508-4182544,4182204-4182414,4181955-4182119,4181741-4181860,4181331-4181624	AT5G13170.1  CDS  gene_syn SAG29, SENESCENCE-ASSOCIATED PROTEIN 29, T19L5.130, T19L5_130  gene SAG29  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  product SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29)  note SENESCENCE-ASSOCIATED PROTEIN 29 (SAG29); LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: MtN3 and saliva related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), MtN3 and saliva related transmembrane protein (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: MTN3 (Arabidopsis homolog of Medicago truncatula MTN3) (TAIR:AT5G23660.1); Has 623 Blast hits to 556 proteins in 95 species: Archae - 0; Bacteria - 6; Metazoa - 241; Fungi - 0; Plants - 298; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT5G13170.1p  transcript_id AT5G13170.1  protein_id AT5G13170.1p  transcript_id AT5G13170.1  
At5g13180	chr5:004196643	0.0	W/4196643-4196823,4196918-4197165,4197248-4197577	AT5G13180.1  CDS  gene_syn ANAC083, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 83, T19L5.140, T19L5_140  gene ANAC083  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ANAC083 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 83); transcription factor  note ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 83 (ANAC083); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC041 (Arabidopsis NAC domain containing protein 41); transcription factor (TAIR:AT2G33480.1); Has 1633 Blast hits to 1631 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1633; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G13180.1p  transcript_id AT5G13180.1  protein_id AT5G13180.1p  transcript_id AT5G13180.1  
At5g13181	chr5:004198846	0.0	C/4198846-4198983	AT5G13181.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G13181.1p  transcript_id AT5G13181.1  protein_id AT5G13181.1p  transcript_id AT5G13181.1  
At5g13190	chr5:004206012	0.0	C/4206012-4206205,4205168-4205294,4204987-4205070	AT5G13190.1  CDS  gene_syn T19L5.5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629); Has 21 Blast hits to 21 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G13190.1p  transcript_id AT5G13190.1  protein_id AT5G13190.1p  transcript_id AT5G13190.1  
At5g13200	chr5:004207081	0.0	W/4207081-4207423,4207514-4207788,4207879-4208079	AT5G13200.1  CDS  gene_syn T19L5.4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product GRAM domain-containing protein / ABA-responsive protein-related  note GRAM domain-containing protein / ABA-responsive protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182); BEST Arabidopsis thaliana protein match is: GEM (GL2-EXPRESSION MODULATOR) (TAIR:AT2G22475.1); Has 237 Blast hits to 237 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 235; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G13200.1p  transcript_id AT5G13200.1  protein_id AT5G13200.1p  transcript_id AT5G13200.1  
At5g13205	chr5:004208521	0.0	C/4208521-4212591	AT5G13205.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 8.1e-252 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At5g13210	chr5:004214567	0.0	W/4214567-4216588	AT5G13210.1  CDS  gene_syn T31B5.30, T31B5_30  product unknown protein  note CONTAINS InterPro DOMAIN/s: Uncharacterized conserved protein UCP015417, vWA (InterPro:IPR011205), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24780.1); Has 250 Blast hits to 233 proteins in 28 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 23; Plants - 45; Viruses - 15; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT5G13210.1p  transcript_id AT5G13210.1  protein_id AT5G13210.1p  transcript_id AT5G13210.1  
At5g13220	chr5:004219001	0.0	W/4219001-4219112,4219190-4219355,4219467-4219629,4219935-4219992,4220463-4220467	AT5G13220.4  CDS  gene_syn AT5G13220, JAS1, JASMONATE-ASSOCIATED 1, JASMONATE-ZIM-DOMAIN PROTEIN 10, JAZ10, T31B5.40, T31B5_40, TIFY 9, TIFY DOMAIN PROTEIN 9, TIFY9  gene JAZ10  function Plants overexpressing At5g13220.3, but not At5g13220.1 showed enhanced insensitivity to MeJa.  go_process response to wounding|GO:0009611|17675405|IEP  go_process response to jasmonic acid stimulus|GO:0009753|17637677|IEP  go_process response to jasmonic acid stimulus|GO:0009753|17675405|IEP  go_function molecular_function|GO:0003674||ND  product JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10)  note JASMONATE-ZIM-DOMAIN PROTEIN 10 (JAZ10); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to jasmonic acid stimulus, response to wounding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399).  protein_id AT5G13220.4p  transcript_id AT5G13220.4  protein_id AT5G13220.4p  transcript_id AT5G13220.4  
At5g13220	chr5:004219001	0.0	W/4219001-4219112,4219190-4219355,4219467-4219684,4219935-4219992,4220463-4220502	AT5G13220.1  CDS  gene_syn AT5G13220, JAS1, JASMONATE-ASSOCIATED 1, JASMONATE-ZIM-DOMAIN PROTEIN 10, JAZ10, T31B5.40, T31B5_40, TIFY 9, TIFY DOMAIN PROTEIN 9, TIFY9  gene JAZ10  function Plants overexpressing At5g13220.3, but not At5g13220.1 showed enhanced insensitivity to MeJa.  go_component nucleus|GO:0005634|17675405|IDA  go_process response to wounding|GO:0009611|17675405|IEP  go_process response to jasmonic acid stimulus|GO:0009753|17637677|IEP  go_process response to jasmonic acid stimulus|GO:0009753|17675405|IEP  go_function molecular_function|GO:0003674||ND  product JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10)  note JASMONATE-ZIM-DOMAIN PROTEIN 10 (JAZ10); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to jasmonic acid stimulus, response to wounding; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: JAZ12 (JASMONATE-ZIM-DOMAIN PROTEIN 12) (TAIR:AT5G20900.1); Has 194 Blast hits to 189 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 194; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G13220.1p  transcript_id AT5G13220.1  protein_id AT5G13220.1p  transcript_id AT5G13220.1  
At5g13220	chr5:004219001	0.0	W/4219001-4219112,4219190-4219355,4219467-4219684,4219935-4219996	AT5G13220.2  CDS  gene_syn AT5G13220, JAS1, JASMONATE-ASSOCIATED 1, JASMONATE-ZIM-DOMAIN PROTEIN 10, JAZ10, T31B5.40, T31B5_40, TIFY 9, TIFY DOMAIN PROTEIN 9, TIFY9  gene JAZ10  function Plants overexpressing At5g13220.3, but not At5g13220.1 showed enhanced insensitivity to MeJa.  go_process response to wounding|GO:0009611|17675405|IEP  go_process response to jasmonic acid stimulus|GO:0009753|17637677|IEP  go_process response to jasmonic acid stimulus|GO:0009753|17675405|IEP  go_function molecular_function|GO:0003674||ND  product JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10)  note TIFY 9; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to jasmonic acid stimulus, response to wounding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1); protein binding (TAIR:AT1G19180.1); Has 125 Blast hits to 120 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G13220.2p  transcript_id AT5G13220.2  protein_id AT5G13220.2p  transcript_id AT5G13220.2  
At5g13220	chr5:004219001	0.0	W/4219001-4219112,4219190-4219355,4219467-4219684,4219935-4219996	AT5G13220.3  CDS  gene_syn AT5G13220, JAS1, JASMONATE-ASSOCIATED 1, JASMONATE-ZIM-DOMAIN PROTEIN 10, JAZ10, T31B5.40, T31B5_40, TIFY 9, TIFY DOMAIN PROTEIN 9, TIFY9  gene JAZ10  function Plants overexpressing At5g13220.3, but not At5g13220.1 showed enhanced insensitivity to MeJa.  go_component nucleus|GO:0005634|17675405|IDA  go_process response to wounding|GO:0009611|17675405|IMP  go_process response to auxin stimulus|GO:0009733|17675405|IMP  go_process response to salicylic acid stimulus|GO:0009751|17675405|IMP  go_process response to jasmonic acid stimulus|GO:0009753|17675405|IMP  go_process response to wounding|GO:0009611|17675405|IEP  go_process response to jasmonic acid stimulus|GO:0009753|17637677|IEP  go_process response to jasmonic acid stimulus|GO:0009753|17675405|IEP  go_function molecular_function|GO:0003674||ND  product JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10)  note TIFY DOMAIN PROTEIN 9 (TIFY9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to jasmonic acid stimulus, response to auxin stimulus, response to wounding, response to salicylic acid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1); protein binding (TAIR:AT1G19180.1); Has 125 Blast hits to 120 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G13220.3p  transcript_id AT5G13220.3  protein_id AT5G13220.3p  transcript_id AT5G13220.3  
At5g13225	chr5:004222003	0.0	C/4222003-4222085	AT5G13225.1  snoRNA  gene_syn 67618.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT5G13225.1  
At5g13230	chr5:004222514	0.0	W/4222514-4224982	AT5G13230.1  CDS  gene_syn T31B5.50, T31B5_50  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G27610.1); Has 15285 Blast hits to 5030 proteins in 168 species: Archae - 0; Bacteria - 6; Metazoa - 112; Fungi - 53; Plants - 14871; Viruses - 0; Other Eukaryotes - 243 (source: NCBI BLink).  protein_id AT5G13230.1p  transcript_id AT5G13230.1  protein_id AT5G13230.1p  transcript_id AT5G13230.1  
At5g13240	chr5:004227121	0.0	C/4227121-4227152,4226942-4227012,4226801-4226850,4226585-4226658,4226429-4226491,4226025-4226112,4225765-4225827,4225607-4225686,4225434-4225505,4225261-4225342	AT5G13240.1  CDS  gene_syn T31B5.60, T31B5_60  go_component nucleus|GO:0005634||IEA  go_process negative regulation of transcription from RNA polymerase III promoter|GO:0016480||IEA  go_function transcription regulator activity|GO:0030528||IEA  product transcription regulator  note transcription regulator; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: negative regulation of transcription from RNA polymerase III promoter; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Maf1 regulator (InterPro:IPR015257), RNA polymerase III transcriptional repressor, MAF1 (InterPro:IPR017152); Has 250 Blast hits to 250 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 108; Fungi - 84; Plants - 23; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT5G13240.1p  transcript_id AT5G13240.1  protein_id AT5G13240.1p  transcript_id AT5G13240.1  
At5g13250	chr5:004234486	0.0	W/4234486-4235346	AT5G13250.1  CDS  gene_syn T31B5.70, T31B5_70  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28080.1); Has 1127 Blast hits to 1024 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 35; Fungi - 35; Plants - 7; Viruses - 0; Other Eukaryotes - 1048 (source: NCBI BLink).  protein_id AT5G13250.1p  transcript_id AT5G13250.1  protein_id AT5G13250.1p  transcript_id AT5G13250.1  
At5g13260	chr5:004243164	0.0	W/4243164-4243565,4243784-4243893,4243983-4244058,4244147-4244188,4244262-4244324,4244407-4244456,4244549-4244576,4244688-4244762,4244862-4244972,4245052-4245112,4245209-4245325,4245441-4245562,4245641-4245710,4245906-4245947,4246165-4246205,4246394-4246520,4246601-4246677	AT5G13260.1  CDS  gene_syn T31B5.80, T31B5_80  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48860.2); Has 2385 Blast hits to 2282 proteins in 272 species: Archae - 27; Bacteria - 178; Metazoa - 1236; Fungi - 433; Plants - 188; Viruses - 21; Other Eukaryotes - 302 (source: NCBI BLink).  protein_id AT5G13260.1p  transcript_id AT5G13260.1  protein_id AT5G13260.1p  transcript_id AT5G13260.1  
At5g13270	chr5:004246954	0.0	C/4246954-4249212	AT5G13270.1  CDS  gene_syn RARE1, REQUIRED FOR ACCD RNA EDITING 1, T31B5.90, T31B5_90  function Encodes RARE1 (Required for accD RNA Editing 1), a trans-factor essential for C-to-U editing of the chloroplast accD transcript. RARE1 carries 15 PPR (pentatricopeptide repeat) motifs, an E/E+ and a DYW domain (C-terminal tripeptide).  go_process RNA modification|GO:0009451|19395655|IMP  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: RNA modification; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: EMB2261 (embryo defective 2261) (TAIR:AT3G49170.1); Has 15595 Blast hits to 5164 proteins in 158 species: Archae - 0; Bacteria - 2; Metazoa - 62; Fungi - 57; Plants - 15132; Viruses - 0; Other Eukaryotes - 342 (source: NCBI BLink).  protein_id AT5G13270.1p  transcript_id AT5G13270.1  protein_id AT5G13270.1p  transcript_id AT5G13270.1  
At5g13280	chr5:004249516	0.0	W/4249516-4249917,4250008-4250090,4250191-4250231,4250386-4250540,4250865-4251014,4251101-4251196,4251286-4251402,4251520-4251639,4251728-4251820,4251936-4252052,4252148-4252264,4252362-4252424,4252499-4252654	AT5G13280.1  CDS  gene_syn AK, AK-LYS1, AK1, ASPARTATE KINASE, ASPARTATE KINASE 1, T31B5.100, T31B5_100  gene AK-LYS1  function Asp kinase inhibited by Lys and S-adenosylmethionine. Contains regulatory domains that belong to the ACT domain family, which allow binding to a extreme variety of ligands. Can function as a monomer or as a dimer with acetohydroxyacid synthase (HSDH).  go_component chloroplast|GO:0009507||IEA  go_process amino acid biosynthetic process|GO:0008652|9207839|TAS  go_function aspartate kinase activity|GO:0004072|9207839|ISS  product AK-LYS1 (ASPARTATE KINASE 1); aspartate kinase  note ASPARTATE KINASE 1 (AK-LYS1); FUNCTIONS IN: aspartate kinase activity; INVOLVED IN: amino acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aspartate kinase, conserved site (InterPro:IPR018042), Aspartate/glutamate/uridylate kinase (InterPro:IPR001048), Amino acid-binding ACT (InterPro:IPR002912), Aspartate kinase region (InterPro:IPR001341); BEST Arabidopsis thaliana protein match is: AK3 (ASPARTATE KINASE 3); aspartate kinase (TAIR:AT3G02020.1); Has 7120 Blast hits to 7084 proteins in 1343 species: Archae - 180; Bacteria - 3919; Metazoa - 4; Fungi - 95; Plants - 121; Viruses - 0; Other Eukaryotes - 2801 (source: NCBI BLink).  protein_id AT5G13280.1p  transcript_id AT5G13280.1  protein_id AT5G13280.1p  transcript_id AT5G13280.1  
At5g13290	chr5:004253320	0.0	C/4253320-4254215,4252924-4253233	AT5G13290.2  CDS  gene_syn CORYNE, CRN, SOL2, SUPPRESSOR OF LLP1 2, T31B5.110, T31B5_110  gene CRN  function Encodes a protein with predicted Ser/Thr kinase activity and membrane localization that is involved in the CLV3 signaling pathway that represses WUS expression in the meristem. Loss of function of CRN can suppress the phenotype caused by overexpression of CLV3. SOL2 isolated as a suppressor of root- specific overexpression of CLE19, a clavata3 like gene. sol2 partially suppresses the short root phenotype caused by CLE19 overexpression. Mutant flowers have extra carpels.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_process regulation of flower development|GO:0009909|12932329|IMP  go_process meristem maintenance|GO:0010073|12932329|IGI  go_process regulation of meristem growth|GO:0010075|18381924|IMP  go_process regulation of root meristem growth|GO:0010082|12932329|IGI  go_function kinase activity|GO:0016301||ISS  product CRN (CORYNE); ATP binding / kinase/ protein kinase  note CORYNE (CRN); FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: regulation of root meristem growth, regulation of meristem growth, meristem maintenance, regulation of flower development; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT2G31880.1); Has 65820 Blast hits to 65246 proteins in 1690 species: Archae - 52; Bacteria - 5135; Metazoa - 27778; Fungi - 4793; Plants - 16692; Viruses - 210; Other Eukaryotes - 11160 (source: NCBI BLink).  protein_id AT5G13290.2p  transcript_id AT5G13290.2  protein_id AT5G13290.2p  transcript_id AT5G13290.2  
At5g13290	chr5:004253858	0.0	C/4253858-4254215,4253320-4253782,4252924-4253233	AT5G13290.1  CDS  gene_syn CORYNE, CRN, SOL2, SUPPRESSOR OF LLP1 2, T31B5.110, T31B5_110  gene CRN  function Encodes a protein with predicted Ser/Thr kinase activity and membrane localization that is involved in the CLV3 signaling pathway that represses WUS expression in the meristem. Loss of function of CRN can suppress the phenotype caused by overexpression of CLV3. SOL2 isolated as a suppressor of root- specific overexpression of CLE19, a clavata3 like gene. sol2 partially suppresses the short root phenotype caused by CLE19 overexpression. Mutant flowers have extra carpels.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_process regulation of flower development|GO:0009909|12932329|IMP  go_process meristem maintenance|GO:0010073|12932329|IGI  go_process regulation of meristem growth|GO:0010075|18381924|IMP  go_process regulation of root meristem growth|GO:0010082|12932329|IGI  go_function kinase activity|GO:0016301||ISS  product CRN (CORYNE); ATP binding / kinase/ protein kinase  note CORYNE (CRN); FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: regulation of root meristem growth, regulation of meristem growth, meristem maintenance, regulation of flower development; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT2G31880.1); Has 64762 Blast hits to 64194 proteins in 1644 species: Archae - 50; Bacteria - 5005; Metazoa - 27240; Fungi - 4755; Plants - 16502; Viruses - 208; Other Eukaryotes - 11002 (source: NCBI BLink).  protein_id AT5G13290.1p  transcript_id AT5G13290.1  protein_id AT5G13290.1p  transcript_id AT5G13290.1  
At5g13290	chr5:004253858	0.0	C/4253858-4254215,4253320-4253782,4253126-4253225	AT5G13290.3  CDS  gene_syn CORYNE, CRN, SOL2, SUPPRESSOR OF LLP1 2, T31B5.110, T31B5_110  gene CRN  function Encodes a protein with predicted Ser/Thr kinase activity and membrane localization that is involved in the CLV3 signaling pathway that represses WUS expression in the meristem. Loss of function of CRN can suppress the phenotype caused by overexpression of CLV3. SOL2 isolated as a suppressor of root- specific overexpression of CLE19, a clavata3 like gene. sol2 partially suppresses the short root phenotype caused by CLE19 overexpression. Mutant flowers have extra carpels.  go_component plasma membrane|GO:0005886|17317660|IDA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_component plasma membrane|GO:0005886|14506206|IDA  go_process regulation of flower development|GO:0009909|12932329|IMP  go_process meristem maintenance|GO:0010073|12932329|IGI  go_process regulation of meristem growth|GO:0010075|18381924|IMP  go_process regulation of root meristem growth|GO:0010082|12932329|IGI  go_function kinase activity|GO:0016301||ISS  product CRN (CORYNE); ATP binding / kinase/ protein kinase  note CORYNE (CRN); FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: regulation of root meristem growth, regulation of meristem growth, meristem maintenance, regulation of flower development; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ERL1 (ERECTA-LIKE 1); kinase (TAIR:AT5G62230.1); Has 38649 Blast hits to 38450 proteins in 965 species: Archae - 15; Bacteria - 1339; Metazoa - 14546; Fungi - 2829; Plants - 14276; Viruses - 85; Other Eukaryotes - 5559 (source: NCBI BLink).  protein_id AT5G13290.3p  transcript_id AT5G13290.3  protein_id AT5G13290.3p  transcript_id AT5G13290.3  
At5g13300	chr5:004261974	0.0	C/4261974-4262018,4261233-4261309,4261018-4261118,4260665-4260735,4260391-4260453,4259879-4259923,4259413-4259478,4259270-4259317,4259072-4259167,4258953-4258994,4258573-4258788,4258368-4258499,4258007-4258237,4257817-4257903,4257394-4257729,4257021-4257166,4256849-4256933,4256165-4256628,4255923-4256055	AT5G13300.1  CDS  gene_syn AGD3, ARF-GAP DOMAIN3, ASCULAR NETWORK DEFECTIVE 3, SCARFACE, SFC, T31B5.120, T31B5_120, VAN3  gene SFC  function Belongs to 15-member small GTPase gene family, ARF-GAP domain proteins (AGD); corresponds to AGD3, and is one of four proteins belonging to class 1, together with AGD1, AGD2 and AGD4. The protein contains four domains: BAR domain, PH domain, an ARF-GAP domain, and two Ankyrin repeats. In sfc mutants, the secondary and tertiary veins of cotyledons, leaves, sepals and petals are largely replaced by small segments of discontinuous veins. sfc mutants have exaggerated responses to auxin.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component trans-Golgi network transport vesicle|GO:0030140|15743878|IDA  go_process response to auxin stimulus|GO:0009733|10887077|IMP  go_process leaf morphogenesis|GO:0009965|10887077|IMP  go_process xylem and phloem pattern formation|GO:0010051|15923323|IMP  go_process phloem or xylem histogenesis|GO:0010087|10887076|IMP  go_function ARF GTPase activator activity|GO:0008060|15743878|IDA  go_function phosphoinositide binding|GO:0035091|15743878|IDA  product SFC (SCARFACE); ARF GTPase activator/ phosphoinositide binding  note SCARFACE (SFC); FUNCTIONS IN: ARF GTPase activator activity, phosphoinositide binding; INVOLVED IN: xylem and phloem pattern formation, phloem or xylem histogenesis, response to auxin stimulus, leaf morphogenesis; LOCATED IN: cytosol, trans-Golgi network transport vesicle, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164), Pleckstrin homology-type (InterPro:IPR011993), BAR (InterPro:IPR004148), Pleckstrin homology (InterPro:IPR001849), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: AGD1 (ARF-GAP domain 1); ARF GTPase activator/ protein binding / zinc ion binding (TAIR:AT5G61980.1); Has 54817 Blast hits to 22015 proteins in 815 species: Archae - 70; Bacteria - 3306; Metazoa - 30174; Fungi - 3154; Plants - 1418; Viruses - 648; Other Eukaryotes - 16047 (source: NCBI BLink).  protein_id AT5G13300.1p  transcript_id AT5G13300.1  protein_id AT5G13300.1p  transcript_id AT5G13300.1  
At5g13310	chr5:004263561	0.0	W/4263561-4263917,4264234-4264989	AT5G13310.1  CDS  gene_syn T22N19.1  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13970.1); Has 356 Blast hits to 305 proteins in 95 species: Archae - 0; Bacteria - 44; Metazoa - 138; Fungi - 38; Plants - 34; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).  protein_id AT5G13310.1p  transcript_id AT5G13310.1  protein_id AT5G13310.1p  transcript_id AT5G13310.1  
At5g13320	chr5:004268902	0.0	W/4268902-4269185,4269269-4269370,4269459-4270240,4270337-4270896	AT5G13320.1  CDS  gene_syn AVRPPHB SUSCEPTIBLE 3, GDG1, GH3-LIKE DEFENSE GENE 1, GH3.12, GRETCHEN HAGEN 3.12, HOPW1-1-INTERACTING 3, PBS3, T22N19.5, WIN3  gene PBS3  function Encodes PBS3 (avrPphB susceptible), also known as GDG1 (GH3-Like Defense Gene 1)& 65292; WIN3 (HopW1-1-Interacting 3). Involved in disease-resistance signaling pathway. Required for accumulation of salicylic acid, activation of defense responses and resistance to Pseudomonas syringae. Expression detected in cotyledons, true leaves, hypocotyls and occasionally in some parts of roots from 10-day-old seedlings. No expression was detected in root, stem, rosette or cauline leaves of mature 4- to 5-week-old plants.  go_component cellular_component|GO:0005575||ND  go_process defense response|GO:0006952|10224270|IMP  go_process response to auxin stimulus|GO:0009733||ISS  go_process defense response to bacterium, incompatible interaction|GO:0009816|17521413|IMP  go_process salicylic acid mediated signaling pathway|GO:0009863|17521413|IEP  go_process detection of fungus|GO:0016046|10224270|IMP  go_process defense response to bacterium|GO:0042742|17521413|IEP  go_process defense response to bacterium|GO:0042742|18266921|IMP  go_function molecular_function|GO:0003674||ND  product PBS3 (AVRPPHB SUSCEPTIBLE 3)  note AVRPPHB SUSCEPTIBLE 3 (PBS3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 6 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: auxin-responsive GH3 family protein (TAIR:AT1G23160.1); Has 679 Blast hits to 657 proteins in 115 species: Archae - 0; Bacteria - 191; Metazoa - 49; Fungi - 2; Plants - 218; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).  protein_id AT5G13320.1p  transcript_id AT5G13320.1  protein_id AT5G13320.1p  transcript_id AT5G13320.1  
At5g13330	chr5:004272384	0.0	W/4272384-4272477,4273917-4274461	AT5G13330.1  CDS  gene_syn Rap2.6L, T22N19.2, related to AP2 6L  gene Rap2.6L  function encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product Rap2.6L (related to AP2 6L); DNA binding / transcription factor  note related to AP2 6L (Rap2.6L); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT5G07310.1); Has 4106 Blast hits to 3893 proteins in 237 species: Archae - 0; Bacteria - 2; Metazoa - 63; Fungi - 19; Plants - 3935; Viruses - 2; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT5G13330.1p  transcript_id AT5G13330.1  protein_id AT5G13330.1p  transcript_id AT5G13330.1  
At5g13340	chr5:004279273	0.0	C/4279273-4279397,4278856-4278975,4278306-4278525,4277939-4278202	AT5G13340.1  CDS  gene_syn T22N19.3  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10890.1); Has 84499 Blast hits to 39808 proteins in 1650 species: Archae - 415; Bacteria - 7950; Metazoa - 42451; Fungi - 5813; Plants - 2221; Viruses - 437; Other Eukaryotes - 25212 (source: NCBI BLink).  protein_id AT5G13340.1p  transcript_id AT5G13340.1  protein_id AT5G13340.1p  transcript_id AT5G13340.1  
At5g13350	chr5:004279884	0.0	W/4279884-4280173,4280503-4280604,4280680-4280820,4280934-4281598,4281722-4282287	AT5G13350.1  CDS  gene_syn T22N19.4  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  product auxin-responsive GH3 family protein  note auxin-responsive GH3 family protein; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: auxin-responsive GH3 family protein (TAIR:AT5G13370.1); Has 800 Blast hits to 739 proteins in 112 species: Archae - 0; Bacteria - 240; Metazoa - 51; Fungi - 2; Plants - 218; Viruses - 0; Other Eukaryotes - 289 (source: NCBI BLink).  protein_id AT5G13350.1p  transcript_id AT5G13350.1  protein_id AT5G13350.1p  transcript_id AT5G13350.1  
At5g13360	chr5:004283805	0.0	W/4283805-4284094,4284342-4284443,4284545-4284685,4284779-4285440,4285531-4286120	AT5G13360.1  CDS  gene_syn T22N19.10, T22N19_10  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  product auxin-responsive GH3 family protein  note auxin-responsive GH3 family protein; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: auxin-responsive GH3 family protein (TAIR:AT5G13370.1); Has 924 Blast hits to 838 proteins in 123 species: Archae - 0; Bacteria - 280; Metazoa - 51; Fungi - 2; Plants - 219; Viruses - 0; Other Eukaryotes - 372 (source: NCBI BLink).  protein_id AT5G13360.1p  transcript_id AT5G13360.1  protein_id AT5G13360.1p  transcript_id AT5G13360.1  
At5g13360	chr5:004283805	0.0	W/4283805-4284094,4284342-4284443,4284545-4284685,4284779-4285440,4285531-4286120	AT5G13360.2  CDS  gene_syn T22N19.10, T22N19_10  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  product auxin-responsive GH3 family protein  note auxin-responsive GH3 family protein; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: auxin-responsive GH3 family protein (TAIR:AT5G13370.1); Has 924 Blast hits to 838 proteins in 123 species: Archae - 0; Bacteria - 280; Metazoa - 51; Fungi - 2; Plants - 219; Viruses - 0; Other Eukaryotes - 372 (source: NCBI BLink).  protein_id AT5G13360.2p  transcript_id AT5G13360.2  protein_id AT5G13360.2p  transcript_id AT5G13360.2  
At5g13370	chr5:004286996	0.0	W/4286996-4287285,4287526-4287627,4287721-4287861,4287999-4288663,4288835-4289424	AT5G13370.1  CDS  gene_syn T22N19.20, T22N19_20  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  product auxin-responsive GH3 family protein  note auxin-responsive GH3 family protein; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: auxin-responsive GH3 family protein (TAIR:AT5G13360.2); Has 819 Blast hits to 760 proteins in 112 species: Archae - 0; Bacteria - 241; Metazoa - 51; Fungi - 2; Plants - 219; Viruses - 0; Other Eukaryotes - 306 (source: NCBI BLink).  protein_id AT5G13370.1p  transcript_id AT5G13370.1  protein_id AT5G13370.1p  transcript_id AT5G13370.1  
At5g13380	chr5:004289912	0.0	W/4289912-4289981,4290081-4290390,4290486-4290587,4290682-4290822,4290910-4291571,4291766-4292355	AT5G13380.1  CDS  gene_syn T22N19.30, T22N19_30  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  product auxin-responsive GH3 family protein  note auxin-responsive GH3 family protein; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, sepal, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: auxin-responsive GH3 family protein (TAIR:AT5G13370.1); Has 803 Blast hits to 764 proteins in 121 species: Archae - 0; Bacteria - 241; Metazoa - 49; Fungi - 2; Plants - 219; Viruses - 0; Other Eukaryotes - 292 (source: NCBI BLink).  protein_id AT5G13380.1p  transcript_id AT5G13380.1  protein_id AT5G13380.1p  transcript_id AT5G13380.1  
At5g13390	chr5:004292809	0.0	W/4292809-4294029,4294184-4294755,4294846-4295065,4295214-4296572	AT5G13390.1  CDS  gene_syn NEF1, NO EXINE FORMATION 1, T22N19.40, T22N19_40  gene NEF1  function Required for normal pollen development and lipid accumulation within the tapetum  go_component chloroplast|GO:0009507||IEA  product NEF1 (NO EXINE FORMATION 1)  note NO EXINE FORMATION 1 (NEF1); LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 74 Blast hits to 64 proteins in 28 species: Archae - 0; Bacteria - 7; Metazoa - 4; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT5G13390.1p  transcript_id AT5G13390.1  protein_id AT5G13390.1p  transcript_id AT5G13390.1  
At5g13400	chr5:004298854	0.0	C/4298854-4299079,4298549-4298766,4297791-4298371,4296854-4297703	AT5G13400.1  CDS  gene_syn T22N19.50, T22N19_50  go_component membrane|GO:0016020||IEA  go_process oligopeptide transport|GO:0006857||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region, conserved site (InterPro:IPR018456), TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: PTR5 (PEPTIDE TRANSPORTER 5); dipeptide transporter/ transporter (TAIR:AT5G01180.1); Has 3261 Blast hits to 3191 proteins in 658 species: Archae - 0; Bacteria - 1099; Metazoa - 461; Fungi - 209; Plants - 1123; Viruses - 0; Other Eukaryotes - 369 (source: NCBI BLink).  protein_id AT5G13400.1p  transcript_id AT5G13400.1  protein_id AT5G13400.1p  transcript_id AT5G13400.1  
At5g13410	chr5:004301638	0.0	C/4301638-4301706,4301492-4301561,4301272-4301412,4300912-4300997,4300775-4300825,4300518-4300598,4300383-4300427,4300207-4300262,4300005-4300080,4299830-4299925	AT5G13410.1  CDS  gene_syn T22N19.60, T22N19_60  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_process protein folding|GO:0006457||IEA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543||ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  go_function FK506 binding|GO:0005528||ISS  product immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein  note immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT4G19830.1); Has 3004 Blast hits to 2990 proteins in 874 species: Archae - 34; Bacteria - 1862; Metazoa - 222; Fungi - 127; Plants - 246; Viruses - 0; Other Eukaryotes - 513 (source: NCBI BLink).  protein_id AT5G13410.1p  transcript_id AT5G13410.1  protein_id AT5G13410.1p  transcript_id AT5G13410.1  
At5g13420	chr5:004304037	0.0	C/4304037-4304212,4303669-4303840,4303526-4303575,4303103-4303403,4302683-4302871,4302413-4302595,4302080-4302325	AT5G13420.1  CDS  gene_syn T22N19.70, T22N19_70  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function catalytic activity|GO:0003824||IEA  go_function transaldolase activity|GO:0004801||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function transaldolase activity|GO:0004801||ISS  product transaldolase, putative  note transaldolase, putative; FUNCTIONS IN: catalytic activity, transaldolase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transaldolase subfamily (InterPro:IPR004732), Aldolase-type TIM barrel (InterPro:IPR013785), Transaldolase, active site (InterPro:IPR018225), Transaldolase, bacterial/plant type (InterPro:IPR014634), Transaldolase (InterPro:IPR001585); Has 1901 Blast hits to 1901 proteins in 693 species: Archae - 22; Bacteria - 1417; Metazoa - 23; Fungi - 13; Plants - 39; Viruses - 0; Other Eukaryotes - 387 (source: NCBI BLink).  protein_id AT5G13420.1p  transcript_id AT5G13420.1  protein_id AT5G13420.1p  transcript_id AT5G13420.1  
At5g13430	chr5:004307225	0.0	C/4307225-4307399,4305414-4306057	AT5G13430.1  CDS  gene_syn T22N19.80, T22N19_80  go_component membrane|GO:0016020|17432890|IDA  go_function metal ion binding|GO:0046872|12606038|IDA  go_component mitochondrion|GO:0005739|12606038|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial respiratory chain complex III|GO:0005750|18189341|IDA  go_process oxidation reduction|GO:0055114|8180500|TAS  product ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative  note ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative; FUNCTIONS IN: metal ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: mitochondrion, mitochondrial respiratory chain complex III, membrane; EXPRESSED IN: male gametophyte, guard cell, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ubiquinol-cytochrome c reductase, iron-sulphur subunit (InterPro:IPR006317), Rieske [2Fe-2S] iron-sulphur domain (InterPro:IPR017941), Rieske [2Fe-2S] region (InterPro:IPR005806), Rieske iron-sulphur protein (InterPro:IPR014349), Ubiquinol cytochrome reductase transmembrane region (InterPro:IPR004192); BEST Arabidopsis thaliana protein match is: ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative (TAIR:AT5G13440.1); Has 3940 Blast hits to 3940 proteins in 823 species: Archae - 4; Bacteria - 1411; Metazoa - 206; Fungi - 100; Plants - 334; Viruses - 0; Other Eukaryotes - 1885 (source: NCBI BLink).  protein_id AT5G13430.1p  transcript_id AT5G13430.1  protein_id AT5G13430.1p  transcript_id AT5G13430.1  
At5g13440	chr5:004309842	0.0	C/4309842-4310022,4308431-4309074	AT5G13440.1  CDS  gene_syn T22N19.90, T22N19_90  go_component mitochondrion|GO:0005739|15276431|IDA  go_function metal ion binding|GO:0046872|12606038|IDA  go_component mitochondrion|GO:0005739|12606038|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial respiratory chain complex III|GO:0005750|18189341|IDA  go_process oxidation reduction|GO:0055114|8180500|TAS  product ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative  note ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative; FUNCTIONS IN: metal ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: mitochondrion, mitochondrial respiratory chain complex III; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Ubiquinol-cytochrome c reductase, iron-sulphur subunit (InterPro:IPR006317), Rieske [2Fe-2S] iron-sulphur domain (InterPro:IPR017941), Rieske [2Fe-2S] region (InterPro:IPR005806), Rieske iron-sulphur protein (InterPro:IPR014349), Ubiquinol cytochrome reductase transmembrane region (InterPro:IPR004192); BEST Arabidopsis thaliana protein match is: ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative (TAIR:AT5G13430.1); Has 3953 Blast hits to 3953 proteins in 832 species: Archae - 4; Bacteria - 1423; Metazoa - 206; Fungi - 100; Plants - 334; Viruses - 0; Other Eukaryotes - 1886 (source: NCBI BLink).  protein_id AT5G13440.1p  transcript_id AT5G13440.1  protein_id AT5G13440.1p  transcript_id AT5G13440.1  
At5g13450	chr5:004311846	0.0	C/4311846-4311941,4311557-4311604,4311156-4311255,4310952-4311064,4310784-4310870,4310558-4310686	AT5G13450.2  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_component mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)|GO:0000275||ISS  go_component mitochondrion|GO:0005739|11743114|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|12681508|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function hydrogen ion transporting ATP synthase activity, rotational mechanism|GO:0046933||ISS  product ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative  note ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: mitochondrion, chloroplast, plasma membrane, membrane, mitochondrial proton-transporting ATP synthase complex, catalytic core F(1); EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, OSCP/delta subunit (InterPro:IPR000711); Has 3531 Blast hits to 3531 proteins in 1079 species: Archae - 0; Bacteria - 1753; Metazoa - 181; Fungi - 90; Plants - 114; Viruses - 0; Other Eukaryotes - 1393 (source: NCBI BLink).  protein_id AT5G13450.2p  transcript_id AT5G13450.2  protein_id AT5G13450.2p  transcript_id AT5G13450.2  
At5g13450	chr5:004311846	0.0	C/4311846-4311941,4311557-4311604,4311156-4311399,4310952-4311064,4310784-4310870,4310558-4310686	AT5G13450.1  CDS  go_component mitochondrion|GO:0005739|15276431|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_component mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)|GO:0000275||ISS  go_component mitochondrion|GO:0005739|11743114|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|12681508|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function hydrogen ion transporting ATP synthase activity, rotational mechanism|GO:0046933||ISS  product ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative  note ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: mitochondrion, chloroplast, plasma membrane, membrane, mitochondrial proton-transporting ATP synthase complex, catalytic core F(1); EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, OSCP/delta subunit (InterPro:IPR000711); BEST Arabidopsis thaliana protein match is: ATPD (ATP SYNTHASE DELTA-SUBUNIT GENE); hydrogen ion transporting ATP synthase, rotational mechanism / proton-transporting ATPase, rotational mechanism (TAIR:AT4G09650.1); Has 3881 Blast hits to 3881 proteins in 1167 species: Archae - 0; Bacteria - 1909; Metazoa - 184; Fungi - 93; Plants - 120; Viruses - 0; Other Eukaryotes - 1575 (source: NCBI BLink).  protein_id AT5G13450.1p  transcript_id AT5G13450.1  protein_id AT5G13450.1p  transcript_id AT5G13450.1  
At5g13460	chr5:004316323	0.0	W/4316323-4316391,4316474-4316779,4317129-4317341,4317415-4317546,4317636-4318247	AT5G13460.1  CDS  gene_syn IQ-domain 11, IQD11, T22N19.110, T22N19_110  gene IQD11  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product IQD11 (IQ-domain 11); calmodulin binding  note IQ-domain 11 (IQD11); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQD12 (IQ-domain 12); calmodulin binding (TAIR:AT5G03960.1); Has 460 Blast hits to 453 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 14; Plants - 419; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT5G13460.1p  transcript_id AT5G13460.1  protein_id AT5G13460.1p  transcript_id AT5G13460.1  
At5g13470	chr5:004318562	0.0	W/4318562-4318686,4319104-4319370,4319633-4319720	AT5G13470.1  CDS  gene_syn T6I14.1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 17 Blast hits to 17 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G13470.1p  transcript_id AT5G13470.1  protein_id AT5G13470.1p  transcript_id AT5G13470.1  
At5g13475	chr5:004320277	0.0	W/4320277-4326003	AT5G13475.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.7e-39 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)  
At5g13480	chr5:004331434	0.0	C/4331434-4331557,4331262-4331353,4330915-4330983,4330732-4330836,4330490-4330585,4330303-4330385,4330118-4330189,4329949-4330046,4329571-4329630,4329401-4329461,4329224-4329311,4329045-4329108,4328716-4328794,4328404-4328493,4328196-4328278,4327270-4327718,4326947-4327117,4326638-4326697	AT5G13480.1  CDS  gene_syn FY, T6I14.10, T6I14_10  gene FY  function Encodes a protein with similarity to yeast Pfs2p, an mRNA processing factor. Involved in regulation of flowering time; affects FCA mRNA processing. Homozygous mutants are late flowering, null alleles are embryo lethal.  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|IPI  go_process mRNA processing|GO:0006397|12809608|IGI  go_process embryonic development ending in seed dormancy|GO:0009793|16033802|IMP  go_process regulation of flower development|GO:0009909|1896021|IMP  go_function protein binding|GO:0005515|18223036|IPI  product FY; protein binding  note FY; FUNCTIONS IN: protein binding; INVOLVED IN: embryonic development ending in seed dormancy, mRNA processing, regulation of flower development; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: HOS15 (high expression of osmotically responsive genes 15) (TAIR:AT5G67320.1); Has 74478 Blast hits to 34213 proteins in 804 species: Archae - 48; Bacteria - 6367; Metazoa - 36026; Fungi - 14455; Plants - 7050; Viruses - 54; Other Eukaryotes - 10478 (source: NCBI BLink).  protein_id AT5G13480.1p  transcript_id AT5G13480.1  protein_id AT5G13480.1p  transcript_id AT5G13480.1  
At5g13485	chr5:004332947	0.0	C/4332947-4334683	AT5G13485.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 6.7e-12 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)  
At5g13490	chr5:004336034	0.0	W/4336034-4336519,4336606-4336980,4337083-4337379	AT5G13490.1  CDS  gene_syn AAC2, ADP/ATP carrier 2, T6I14.20, T6I14_20  gene AAC2  function Encodes mitochondrial ADP/ATP carrier  go_component mitochondrion|GO:0005739|15276431|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component mitochondrial envelope|GO:0005740|12084057|TAS  go_component mitochondrial inner membrane|GO:0005743||ISS  go_component plastid|GO:0009536|16618929|IDA  go_process transport|GO:0006810||ISS  go_process purine nucleotide transport|GO:0015865|12084057|IDA  go_function ATP:ADP antiporter activity|GO:0005471|12084057|IDA  go_function ATP:ADP antiporter activity|GO:0005471||ISS  go_function binding|GO:0005488||ISS  product AAC2 (ADP/ATP carrier 2); ATP:ADP antiporter/ binding  note ADP/ATP carrier 2 (AAC2); FUNCTIONS IN: binding, ATP:ADP antiporter activity; INVOLVED IN: transport, purine nucleotide transport; LOCATED IN: in 8 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: AAC1 (ADP/ATP CARRIER 1); ATP:ADP antiporter/ binding (TAIR:AT3G08580.2); Has 14776 Blast hits to 9033 proteins in 347 species: Archae - 0; Bacteria - 0; Metazoa - 7914; Fungi - 3380; Plants - 2184; Viruses - 0; Other Eukaryotes - 1298 (source: NCBI BLink).  protein_id AT5G13490.1p  transcript_id AT5G13490.1  protein_id AT5G13490.1p  transcript_id AT5G13490.1  
At5g13490	chr5:004336034	0.0	W/4336034-4336519,4336606-4336980,4337083-4337379	AT5G13490.2  CDS  gene_syn AAC2, ADP/ATP carrier 2, T6I14.20, T6I14_20  gene AAC2  function Encodes mitochondrial ADP/ATP carrier  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component mitochondrial envelope|GO:0005740|12084057|TAS  go_component mitochondrial inner membrane|GO:0005743||ISS  go_component plastid|GO:0009536|16618929|IDA  go_process transport|GO:0006810||ISS  go_process purine nucleotide transport|GO:0015865|12084057|IDA  go_function ATP:ADP antiporter activity|GO:0005471|12084057|IDA  go_function ATP:ADP antiporter activity|GO:0005471||ISS  go_function binding|GO:0005488||ISS  product AAC2 (ADP/ATP carrier 2); ATP:ADP antiporter/ binding  note ADP/ATP carrier 2 (AAC2); FUNCTIONS IN: binding, ATP:ADP antiporter activity; INVOLVED IN: transport, purine nucleotide transport; LOCATED IN: in 6 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: AAC1 (ADP/ATP CARRIER 1); ATP:ADP antiporter/ binding (TAIR:AT3G08580.2); Has 14776 Blast hits to 9033 proteins in 347 species: Archae - 0; Bacteria - 0; Metazoa - 7914; Fungi - 3380; Plants - 2184; Viruses - 0; Other Eukaryotes - 1298 (source: NCBI BLink).  protein_id AT5G13490.2p  transcript_id AT5G13490.2  protein_id AT5G13490.2p  transcript_id AT5G13490.2  
At5g13500	chr5:004338676	0.0	W/4338676-4339065,4339170-4339237,4339318-4339519,4339686-4339783,4339889-4339958,4340088-4340159,4340309-4340422,4340765-4340827	AT5G13500.1  CDS  gene_syn T6I14.30, T6I14_30  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25265.1); Has 112 Blast hits to 97 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT5G13500.1p  transcript_id AT5G13500.1  protein_id AT5G13500.1p  transcript_id AT5G13500.1  
At5g13500	chr5:004338676	0.0	W/4338676-4339065,4339170-4339237,4339318-4339519,4339686-4339783,4339889-4339958,4340088-4340159,4340309-4340422,4340765-4340827	AT5G13500.2  CDS  gene_syn T6I14.30, T6I14_30  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25265.1); Has 112 Blast hits to 97 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT5G13500.2p  transcript_id AT5G13500.2  protein_id AT5G13500.2p  transcript_id AT5G13500.2  
At5g13500	chr5:004338676	0.0	W/4338676-4339065,4339170-4339237,4339318-4339519,4339686-4339783,4339889-4339958,4340088-4340159,4340309-4340422,4340765-4340827	AT5G13500.3  CDS  gene_syn T6I14.30, T6I14_30  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25265.1); Has 112 Blast hits to 97 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT5G13500.3p  transcript_id AT5G13500.3  protein_id AT5G13500.3p  transcript_id AT5G13500.3  
At5g13510	chr5:004341294	0.0	W/4341294-4341956	AT5G13510.1  CDS  gene_syn T6I14.40, T6I14_40  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process ribosome biogenesis|GO:0042254||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L10 family protein  note ribosomal protein L10 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, ribosome, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L10 (InterPro:IPR001790); BEST Arabidopsis thaliana protein match is: ribosomal protein L10 family protein (TAIR:AT3G12370.1); Has 4252 Blast hits to 4252 proteins in 1286 species: Archae - 70; Bacteria - 2609; Metazoa - 2; Fungi - 2; Plants - 39; Viruses - 0; Other Eukaryotes - 1530 (source: NCBI BLink).  protein_id AT5G13510.1p  transcript_id AT5G13510.1  protein_id AT5G13510.1p  transcript_id AT5G13510.1  
At5g13520	chr5:004343576	0.0	C/4343576-4344571,4343218-4343451,4342807-4343133,4342117-4342410	AT5G13520.1  CDS  gene_syn T6I14.50, T6I14_50  go_process proteolysis|GO:0006508||IEA  go_process leukotriene biosynthetic process|GO:0019370||IEA  go_function binding|GO:0005488||IEA  go_function metallopeptidase activity|GO:0008237||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process proteolysis|GO:0006508||ISS  product peptidase M1 family protein  note peptidase M1 family protein; FUNCTIONS IN: metallopeptidase activity, binding, zinc ion binding; INVOLVED IN: proteolysis, leukotriene biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M1, membrane alanine aminopeptidase (InterPro:IPR001930), Peptidase M1, membrane alanine aminopeptidase, N-terminal (InterPro:IPR014782), Peptidase M1, leukotriene A4 hydrolase, aminopeptidase C-terminal (InterPro:IPR015211), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: APM1 (AMINOPEPTIDASE M1); aminopeptidase (TAIR:AT4G33090.1); Has 5405 Blast hits to 5373 proteins in 1099 species: Archae - 78; Bacteria - 2335; Metazoa - 1533; Fungi - 322; Plants - 75; Viruses - 0; Other Eukaryotes - 1062 (source: NCBI BLink).  protein_id AT5G13520.1p  transcript_id AT5G13520.1  protein_id AT5G13520.1p  transcript_id AT5G13520.1  
At5g13530	chr5:004345618	0.0	W/4345618-4346360,4347187-4347540,4347621-4347851,4348033-4348158,4348257-4348593,4348750-4348907,4349246-4349403,4349759-4349880,4350152-4350286,4351007-4351131,4351351-4351455,4351531-4351764,4351985-4352318,4352405-4352593,4352728-4353033,4353149-4354369	AT5G13530.1  CDS  gene_syn KEEP ON GOING, KEG, T6I14.60, T6I14_60  gene KEG  function Encodes KEEP ON GOING (KEG), a RING E3 ligase involved in abscisic acid signaling. KEG is essential for Arabidopsis growth and development.  go_process defense response|GO:0006952|18815384|IMP  go_process abscisic acid mediated signaling|GO:0009738|17194765|IGI  go_process abscisic acid mediated signaling|GO:0009738|17194765|IMP  go_process abscisic acid mediated signaling|GO:0009738|18815384|IMP  go_process protein ubiquitination|GO:0016567|17194765|IDA  go_process developmental growth|GO:0048589|17194765|IMP  go_function protein kinase activity|GO:0004672|17194765|IDA  go_function protein kinase activity|GO:0004672||ISS  go_function ubiquitin-protein ligase activity|GO:0004842|17194765|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|18815384|IDA  go_function protein binding|GO:0005515||ISS  product KEG (KEEP ON GOING); protein binding / protein kinase/ ubiquitin-protein ligase  note KEEP ON GOING (KEG); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, protein kinase activity; INVOLVED IN: abscisic acid mediated signaling, defense response, developmental growth, protein ubiquitination; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Protein kinase, ATP binding site (InterPro:IPR017441), Zinc finger, RING-type (InterPro:IPR001841), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G32250.3); Has 109229 Blast hits to 73251 proteins in 2099 species: Archae - 84; Bacteria - 9258; Metazoa - 53502; Fungi - 9111; Plants - 12511; Viruses - 1056; Other Eukaryotes - 23707 (source: NCBI BLink).  protein_id AT5G13530.1p  transcript_id AT5G13530.1  protein_id AT5G13530.1p  transcript_id AT5G13530.1  
At5g13548	chr5:004354886	0.0	C/4354886-4355128	AT5G13548.1  pseudogenic_transcript  pseudo  function Pseudogene of AT3G12600; ATNUDT16 (Arabidopsis thaliana Nudix hydrolase homolog 16); hydrolase  
At5g13550	chr5:004359155	0.0	C/4359155-4359490,4358868-4358916,4358555-4358756,4358222-4358390,4357777-4357842,4357581-4357688,4357385-4357492,4357087-4357152,4356927-4356987,4356671-4356798,4356506-4356547,4356301-4356417,4356142-4356193,4355906-4356044,4355412-4355826	AT5G13550.1  CDS  gene_syn SULTR4;1  gene SULTR4;1  function Encodes a sulfate transporter.  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process sulfate transport|GO:0008272||IEA  go_function sulfate transmembrane transporter activity|GO:0015116||ISS  product SULTR4;1; sulfate transmembrane transporter  note SULTR4;1; FUNCTIONS IN: sulfate transmembrane transporter activity; INVOLVED IN: sulfate transport, transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sulphate transporter (InterPro:IPR011547), Sulphate transporter/antisigma-factor antagonist STAS (InterPro:IPR002645), Sulphate anion transporter, conserved site (InterPro:IPR018045), Sulphate anion transporter (InterPro:IPR001902); BEST Arabidopsis thaliana protein match is: SULTR4;2; sulfate transmembrane transporter (TAIR:AT3G12520.1); Has 7682 Blast hits to 7630 proteins in 1192 species: Archae - 36; Bacteria - 4042; Metazoa - 987; Fungi - 277; Plants - 324; Viruses - 0; Other Eukaryotes - 2016 (source: NCBI BLink).  protein_id AT5G13550.1p  transcript_id AT5G13550.1  protein_id AT5G13550.1p  transcript_id AT5G13550.1  
At5g13560	chr5:004366169	0.0	C/4366169-4366318,4365781-4365990,4365289-4365384,4365089-4365141,4364850-4364946,4364670-4364743,4364444-4364555,4364249-4364359,4363980-4364056,4363540-4363606,4363323-4363388,4363002-4363109,4362788-4362918,4362635-4362701,4362490-4362557,4362271-4362364,4362051-4362121,4361579-4361966	AT5G13560.1  CDS  gene_syn T6I14.4  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37370.1); Has 10088 Blast hits to 7234 proteins in 544 species: Archae - 139; Bacteria - 631; Metazoa - 5362; Fungi - 792; Plants - 329; Viruses - 14; Other Eukaryotes - 2821 (source: NCBI BLink).  protein_id AT5G13560.1p  transcript_id AT5G13560.1  protein_id AT5G13560.1p  transcript_id AT5G13560.1  
At5g13570	chr5:004367532	0.0	W/4367532-4367617,4367726-4367877,4368075-4368202,4368280-4368375,4369077-4369229,4369320-4369423,4369514-4369581,4369658-4369992	AT5G13570.1  CDS  gene_syn DCP2, DECAPPING 2, T6I14.5, TDT, TRIDENT  gene DCP2  function Encodes DCP2 with mRNA decapping activity. DCP2 forms a mRNA decapping complex with DCP1 (At1g08370) and VCS (VARICOSE) (At3g13300). Recombinant DCP2 is enzymatically active in vitro, generating from capped mRNAs m7GDP, and 5 -phosphorylated mRNAs. DCP1, DCP2 and VCS colocalize in cytoplasmic loci, which are putative Arabidopsis mRNA processing bodies. Null mutants of DCP1, DCP2, and VCS accumulate capped mRNAs with a reduced degradation rate. These mutants also share a similar lethal phenotype at the seedling cotyledon stage, with disorganized veins, swollen root hairs, and altered epidermal cell morphology. The protein was shown by immunoprecipitation not to interact with DCP1.  go_component cytoplasmic mRNA processing body|GO:0000932|17158604|IDA  go_component cytoplasmic mRNA processing body|GO:0000932|17485080|NAS  go_component cytoplasmic mRNA processing body|GO:0000932|17513503|IDA  go_component cytoplasm|GO:0005737|17485080|IDA  go_process mRNA catabolic process|GO:0006402|17513503|IMP  go_process deadenylation-independent decapping of nuclear-transcribed mRNA|GO:0031087|17158604|IDA  go_function mRNA binding|GO:0003729|18025047|IDA  go_function hydrolase activity|GO:0016787||ISS  go_function protein homodimerization activity|GO:0042803|17513503|IPI  go_function m7G(5 )pppN diphosphatase activity|GO:0050072|17485080|IDA  go_function m7G(5 )pppN diphosphatase activity|GO:0050072|18025047|IDA  product DCP2 (DECAPPING 2); hydrolase/ m7G(5 )pppN diphosphatase/ mRNA binding / protein homodimerization  note DECAPPING 2 (DCP2); FUNCTIONS IN: hydrolase activity, mRNA binding, m7G(5 )pppN diphosphatase activity, protein homodimerization activity; INVOLVED IN: mRNA catabolic process, deadenylation-independent decapping of nuclear-transcribed mRNA; LOCATED IN: cytoplasmic mRNA processing body, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), Dcp2, box A (InterPro:IPR007722), NUDIX hydrolase, core (InterPro:IPR000086); Has 607 Blast hits to 603 proteins in 197 species: Archae - 11; Bacteria - 144; Metazoa - 123; Fungi - 108; Plants - 26; Viruses - 8; Other Eukaryotes - 187 (source: NCBI BLink).  protein_id AT5G13570.1p  transcript_id AT5G13570.1  protein_id AT5G13570.1p  transcript_id AT5G13570.1  
At5g13580	chr5:004370879	0.0	W/4370879-4373062	AT5G13580.1  CDS  gene_syn T6I14.7  go_component membrane|GO:0016020||IEA  go_process response to nematode|GO:0009624|16478044|IEP  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ABC transporter family protein  note ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: response to nematode; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 (InterPro:IPR000412), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATPase, coupled to transmembrane movement of substances (TAIR:AT3G55090.1); Has 224196 Blast hits to 205992 proteins in 2639 species: Archae - 4262; Bacteria - 155719; Metazoa - 7197; Fungi - 4037; Plants - 2654; Viruses - 9; Other Eukaryotes - 50318 (source: NCBI BLink).  protein_id AT5G13580.1p  transcript_id AT5G13580.1  protein_id AT5G13580.1p  transcript_id AT5G13580.1  
At5g13590	chr5:004378630	0.0	C/4378630-4378647,4376579-4378550,4376107-4376419,4375872-4376005,4374718-4375787	AT5G13590.1  CDS  gene_syn T6I14.8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 173 Blast hits to 154 proteins in 57 species: Archae - 0; Bacteria - 41; Metazoa - 72; Fungi - 9; Plants - 16; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT5G13590.1p  transcript_id AT5G13590.1  protein_id AT5G13590.1p  transcript_id AT5G13590.1  
At5g13600	chr5:004380432	0.0	W/4380432-4380490,4380574-4380643,4380729-4381925,4382048-4382497	AT5G13600.1  CDS  gene_syn T6I14.9  go_component membrane|GO:0016020|17432890|IDA  go_process response to light stimulus|GO:0009416||IEA  go_function signal transducer activity|GO:0004871||IEA  go_function protein binding|GO:0005515||IEA  go_process response to light stimulus|GO:0009416||ISS  go_function signal transducer activity|GO:0004871||ISS  go_function protein binding|GO:0005515||ISS  product phototropic-responsive NPH3 family protein  note phototropic-responsive NPH3 family protein; FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: phototropic-responsive NPH3 family protein (TAIR:AT5G03250.1); Has 540 Blast hits to 532 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 107; Fungi - 6; Plants - 427; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G13600.1p  transcript_id AT5G13600.1  protein_id AT5G13600.1p  transcript_id AT5G13600.1  
At5g13610	chr5:004383073	0.0	W/4383073-4383464,4383556-4383664,4383754-4383916,4384003-4384151,4384244-4384395,4384480-4384594,4384680-4384808	AT5G13610.1  CDS  gene_syn T6I14.13  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF155 (InterPro:IPR003734); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69380.1); Has 361 Blast hits to 361 proteins in 152 species: Archae - 0; Bacteria - 121; Metazoa - 21; Fungi - 154; Plants - 33; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT5G13610.1p  transcript_id AT5G13610.1  protein_id AT5G13610.1p  transcript_id AT5G13610.1  
At5g13620	chr5:004385700	0.0	C/4385700-4386373,4385385-4385616	AT5G13620.1  CDS  gene_syn T6I14.11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G49290.1); Has 41 Blast hits to 41 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G13620.1p  transcript_id AT5G13620.1  protein_id AT5G13620.1p  transcript_id AT5G13620.1  
At5g13630	chr5:004390678	0.0	C/4390678-4392082,4390500-4390582,4388598-4390400,4388028-4388508,4387920-4387939	AT5G13630.2  CDS  gene_syn CCH, CCH1, CHLH, CONDITIONAL CHLORINA, GENOMES UNCOUPLED 5, GUN5, T6I14.12  gene GUN5  function Encodes magnesium chelatase involved in plastid-to-nucleus signal transduction.  go_component chloroplast|GO:0009507|18431481|IDA  go_process biosynthetic process|GO:0009058||IEA  go_process chlorophyll biosynthetic process|GO:0015995||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component chloroplast|GO:0009507|17135235|IDA  go_component chloroplast inner membrane|GO:0009706|11172074|NAS  go_component magnesium chelatase complex|GO:0010007|15815918|TAS  go_function magnesium chelatase activity|GO:0016851|11172074|ISS  product GUN5 (GENOMES UNCOUPLED 5); magnesium chelatase  note GENOMES UNCOUPLED 5 (GUN5); FUNCTIONS IN: magnesium chelatase activity; INVOLVED IN: chlorophyll biosynthetic process, biosynthetic process; LOCATED IN: mitochondrion, magnesium chelatase complex, chloroplast, chloroplast inner membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CobN/magnesium chelatase (InterPro:IPR003672), Magnesium-chelatase, subunit H (InterPro:IPR011771); Has 2875 Blast hits to 2507 proteins in 401 species: Archae - 201; Bacteria - 1237; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 1381 (source: NCBI BLink).  protein_id AT5G13630.2p  transcript_id AT5G13630.2  protein_id AT5G13630.2p  transcript_id AT5G13630.2  
At5g13630	chr5:004390678	0.0	C/4390678-4392082,4390500-4390582,4388598-4390400,4388032-4388508,4387567-4387944	AT5G13630.1  CDS  gene_syn CCH, CCH1, CHLH, CONDITIONAL CHLORINA, GENOMES UNCOUPLED 5, GUN5, T6I14.12  gene GUN5  function Encodes magnesium chelatase involved in plastid-to-nucleus signal transduction.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process biosynthetic process|GO:0009058||IEA  go_process chlorophyll biosynthetic process|GO:0015995||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component chloroplast|GO:0009507|17135235|IDA  go_component chloroplast inner membrane|GO:0009706|11172074|NAS  go_component magnesium chelatase complex|GO:0010007|15815918|TAS  go_function magnesium chelatase activity|GO:0016851|11172074|ISS  product GUN5 (GENOMES UNCOUPLED 5); magnesium chelatase  note GENOMES UNCOUPLED 5 (GUN5); FUNCTIONS IN: magnesium chelatase activity; INVOLVED IN: chlorophyll biosynthetic process, biosynthetic process; LOCATED IN: mitochondrion, magnesium chelatase complex, chloroplast, chloroplast inner membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CobN/magnesium chelatase (InterPro:IPR003672), Magnesium-chelatase, subunit H (InterPro:IPR011771); Has 3082 Blast hits to 2714 proteins in 402 species: Archae - 203; Bacteria - 1255; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 1568 (source: NCBI BLink).  protein_id AT5G13630.1p  transcript_id AT5G13630.1  protein_id AT5G13630.1p  transcript_id AT5G13630.1  
At5g13640	chr5:004393529	0.0	W/4393529-4393974,4394800-4395022,4395118-4395401,4395857-4396175,4396255-4396514,4396730-4397213	AT5G13640.1  CDS  gene_syn ATPDAT, PHOSPHOLIPID DIACYLGLYCEROL ACYLTRANSFERASE, T6I14.2  gene ATPDAT  function arabidopsis phospholipid:diacylglycerol acyltransferase (PDAT)  go_component vacuole|GO:0005773|15539469|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function phosphatidylcholine-sterol O-acyltransferase activity|GO:0004607||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process lipid metabolic process|GO:0006629||ISS  go_function phosphatidylcholine-sterol O-acyltransferase activity|GO:0004607||ISS  product ATPDAT; phosphatidylcholine-sterol O-acyltransferase  note ATPDAT; FUNCTIONS IN: phosphatidylcholine-sterol O-acyltransferase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endoplasmic reticulum, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lecithin:cholesterol acyltransferase (InterPro:IPR003386); BEST Arabidopsis thaliana protein match is: lecithin:cholesterol acyltransferase family protein / LACT family protein (TAIR:AT3G44830.1); Has 387 Blast hits to 354 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi - 101; Plants - 85; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT5G13640.1p  transcript_id AT5G13640.1  protein_id AT5G13640.1p  transcript_id AT5G13640.1  
At5g13650	chr5:004397821	0.0	W/4397821-4398028,4398235-4398350,4398425-4398628,4398716-4398892,4399007-4399159,4399569-4399658,4400029-4400163,4400311-4400427,4400585-4400736,4400808-4400892,4401071-4401165,4401646-4401811,4401944-4402139,4402228-4402364	AT5G13650.2  CDS  gene_syn T6I14.3  go_component chloroplast|GO:0009507|18431481|IDA  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_function translation elongation factor activity|GO:0003746||ISS  go_function GTP binding|GO:0005525||ISS  product elongation factor family protein  note elongation factor family protein; FUNCTIONS IN: GTP binding, translation elongation factor activity, GTPase activity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), GTP-binding protein TypA (InterPro:IPR006298), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Elongation factor G, III and V (InterPro:IPR009022), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: elongation factor family protein (TAIR:AT2G31060.2); Has 52040 Blast hits to 46861 proteins in 4222 species: Archae - 904; Bacteria - 26711; Metazoa - 3006; Fungi - 1714; Plants - 1188; Viruses - 0; Other Eukaryotes - 18517 (source: NCBI BLink).  protein_id AT5G13650.2p  transcript_id AT5G13650.2  protein_id AT5G13650.2p  transcript_id AT5G13650.2  
At5g13650	chr5:004397821	0.0	W/4397821-4398028,4398238-4398350,4398425-4398628,4398716-4398892,4399007-4399159,4399569-4399658,4400029-4400163,4400311-4400427,4400585-4400736,4400808-4400892,4401071-4401165,4401646-4401811,4401944-4402139,4402228-4402364	AT5G13650.1  CDS  gene_syn T6I14.3  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_function translation elongation factor activity|GO:0003746||ISS  go_function GTP binding|GO:0005525||ISS  product elongation factor family protein  note elongation factor family protein; FUNCTIONS IN: GTP binding, translation elongation factor activity, GTPase activity; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), GTP-binding protein TypA (InterPro:IPR006298), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Elongation factor G, III and V (InterPro:IPR009022), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: elongation factor family protein (TAIR:AT2G31060.2); Has 52044 Blast hits to 46863 proteins in 4222 species: Archae - 904; Bacteria - 26713; Metazoa - 3006; Fungi - 1708; Plants - 1188; Viruses - 0; Other Eukaryotes - 18525 (source: NCBI BLink).  protein_id AT5G13650.1p  transcript_id AT5G13650.1  protein_id AT5G13650.1p  transcript_id AT5G13650.1  
At5g13655	chr5:004403090	0.0	W/4403090-4404277	AT5G13655.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G11710.1); similar to putative AP endonuclease/reverse transcriptase [Brassica napus] (GB:AAM82604.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446)  
At5g13660	chr5:004405094	0.0	W/4405094-4406365,4406444-4406515,4406615-4406813,4406913-4406983	AT5G13660.2  CDS  gene_syn T6I14.6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59830.2); Has 67 Blast hits to 57 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G13660.2p  transcript_id AT5G13660.2  protein_id AT5G13660.2p  transcript_id AT5G13660.2  
At5g13660	chr5:004405094	0.0	W/4405094-4406365,4406447-4406515,4406615-4406813,4406913-4406983	AT5G13660.1  CDS  gene_syn T6I14.6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59830.2); Has 65 Blast hits to 58 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G13660.1p  transcript_id AT5G13660.1  protein_id AT5G13660.1p  transcript_id AT5G13660.1  
At5g13670	chr5:004408777	0.0	C/4408777-4408955,4408622-4408684,4408431-4408547,4408088-4408337,4407740-4407901,4407503-4407651,4407205-4407418	AT5G13670.1  CDS  gene_syn MSH12.14, MSH12_14  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  product nodulin MtN21 family protein  note nodulin MtN21 family protein; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT2G39510.1); Has 2125 Blast hits to 2110 proteins in 336 species: Archae - 19; Bacteria - 781; Metazoa - 4; Fungi - 0; Plants - 640; Viruses - 0; Other Eukaryotes - 681 (source: NCBI BLink).  protein_id AT5G13670.1p  transcript_id AT5G13670.1  protein_id AT5G13670.1p  transcript_id AT5G13670.1  
At5g13680	chr5:004415313	0.0	C/4415313-4415471,4414745-4415078,4411572-4414620,4410921-4411022,4410522-4410837	AT5G13680.1  CDS  gene_syn ABA-OVERLY SENSITIVE 1, ABO1, ELO2, ELONGATA 2, MSH12.15, MSH12_15  gene ABO1  function A subunit of Elongator, a histone acetyl transferase complex, consisting of six subunits (ELP1 ELP6), that copurifies with the elongating RNAPII in yeast and humans. Three Arabidopsis thaliana genes, encoding homologs of the yeast Elongator subunits ELP1, ELP3 (histone acetyl transferase), and ELP4 are responsible for the narrow leaf phenotype in elongata mutants and for reduced root growth that results from a decreased cell division rate.  go_component cellular_component|GO:0005575||ND  go_process cell proliferation|GO:0008283|15894610|IMP  go_process organ growth|GO:0035265|15894610|IMP  go_function transcription elongation regulator activity|GO:0003711||ISS  product ABO1 (ABA-OVERLY SENSITIVE 1); transcription elongation regulator  note ABA-OVERLY SENSITIVE 1 (ABO1); FUNCTIONS IN: transcription elongation regulator activity; INVOLVED IN: cell proliferation, organ growth; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), IKI3 (InterPro:IPR006849); Has 326 Blast hits to 262 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 147; Fungi - 133; Plants - 19; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT5G13680.1p  transcript_id AT5G13680.1  protein_id AT5G13680.1p  transcript_id AT5G13680.1  
At5g13690	chr5:004415808	0.0	W/4415808-4416020,4416095-4416168,4416251-4416462,4416559-4416680,4416799-4416884,4417005-4417099,4417191-4417272,4417426-4417532,4417698-4417728,4417898-4418015,4418198-4418248,4418321-4418430,4418513-4418615,4418729-4418827,4418917-4419027,4419122-4419372,4419442-4419679,4419758-4419836,4419921-4420159	AT5G13690.1  CDS  gene_syn MSH12.16, MSH12_16  go_component vacuole|GO:0005773|15539469|IDA  go_function alpha-N-acetylglucosaminidase activity|GO:0004561||ISS  product alpha-N-acetylglucosaminidase family / NAGLU family  note alpha-N-acetylglucosaminidase family / NAGLU family; FUNCTIONS IN: alpha-N-acetylglucosaminidase activity; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-N-acetylglucosaminidase (InterPro:IPR007781); Has 254 Blast hits to 246 proteins in 93 species: Archae - 0; Bacteria - 100; Metazoa - 87; Fungi - 20; Plants - 23; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT5G13690.1p  transcript_id AT5G13690.1  protein_id AT5G13690.1p  transcript_id AT5G13690.1  
At5g13700	chr5:004422932	0.0	C/4422932-4422974,4422609-4422858,4422405-4422527,4422263-4422324,4422030-4422184,4421484-4421627,4421094-4421243,4420541-4420795,4420222-4420458	AT5G13700.1  CDS  gene_syn APAO, ARABIDOPSIS THALIANA POLYAMINE OXIDASE 1, ATPAO1, MSH12.17, MSH12_17, PAO1, POLYAMINE OXIDASE 1  gene ATPAO1  function Encodes a protein with polyamine oxidase activity. The mRNA of this gene is only expressed in very low amounts in the organs where it was detected (light-grown plants).  go_component endomembrane system|GO:0012505||IEA  go_function polyamine oxidase activity|GO:0046592|16778015|IDA  go_function FAD binding|GO:0050660|16778015|IDA  product ATPAO1 (ARABIDOPSIS THALIANA POLYAMINE OXIDASE 1); FAD binding / polyamine oxidase  note ARABIDOPSIS THALIANA POLYAMINE OXIDASE 1 (ATPAO1); FUNCTIONS IN: FAD binding, polyamine oxidase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), Flavin-containing amine oxidase (InterPro:IPR001613); BEST Arabidopsis thaliana protein match is: ATPAO2 (Polyamine oxidase 2); amine oxidase/ electron carrier/ oxidoreductase (TAIR:AT2G43020.1); Has 3361 Blast hits to 2937 proteins in 495 species: Archae - 2; Bacteria - 887; Metazoa - 1349; Fungi - 315; Plants - 277; Viruses - 0; Other Eukaryotes - 531 (source: NCBI BLink).  protein_id AT5G13700.1p  transcript_id AT5G13700.1  protein_id AT5G13700.1p  transcript_id AT5G13700.1  
At5g13710	chr5:004426802	0.0	C/4426802-4426866,4426143-4426209,4425823-4425896,4425638-4425722,4425498-4425553,4425302-4425356,4425174-4425221,4424972-4425055,4424776-4424892,4424607-4424690,4424392-4424517,4424205-4424302,4424048-4424099	AT5G13710.1  CDS  gene_syn CEPHALOPOD, CPH, MSH12.18, MSH12_18, SAM:CYCLOARTENOL-C24-METHYLTRANSFERASE, SMT1, STEROL METHYLTRANSFERASE 1  gene SMT1  function SMT1 controls the level of cholesterol in plants  go_component vacuole|GO:0005773|15539469|IDA  go_process embryonic development ending in seed dormancy|GO:0009793|10852933|IMP  go_process sterol biosynthetic process|GO:0016126|10852933|IMP  go_process sterol biosynthetic process|GO:0016126|10852933|TAS  go_function sterol 24-C-methyltransferase activity|GO:0003838|10852933|IDA  go_function sterol 24-C-methyltransferase activity|GO:0003838|10852933|IGI  product SMT1 (STEROL METHYLTRANSFERASE 1); sterol 24-C-methyltransferase  note STEROL METHYLTRANSFERASE 1 (SMT1); FUNCTIONS IN: sterol 24-C-methyltransferase activity; INVOLVED IN: embryonic development ending in seed dormancy, sterol biosynthetic process; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sterol methyltransferase C-terminal (InterPro:IPR013705), Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: SMT3 (STEROL METHYLTRANSFERASE 3); S-adenosylmethionine-dependent methyltransferase/ sterol 24-C-methyltransferase (TAIR:AT1G76090.1); Has 7566 Blast hits to 7564 proteins in 1286 species: Archae - 215; Bacteria - 4604; Metazoa - 94; Fungi - 296; Plants - 352; Viruses - 0; Other Eukaryotes - 2005 (source: NCBI BLink).  protein_id AT5G13710.1p  transcript_id AT5G13710.1  protein_id AT5G13710.1p  transcript_id AT5G13710.1  
At5g13710	chr5:004426802	0.0	C/4426802-4426866,4426143-4426209,4425823-4425896,4425638-4425722,4425498-4425553,4425302-4425356,4425174-4425221,4424972-4425055,4424776-4424892,4424607-4424690,4424392-4424517,4424205-4424302,4424048-4424099	AT5G13710.2  CDS  gene_syn CEPHALOPOD, CPH, MSH12.18, MSH12_18, SAM:CYCLOARTENOL-C24-METHYLTRANSFERASE, SMT1, STEROL METHYLTRANSFERASE 1  gene SMT1  function SMT1 controls the level of cholesterol in plants  go_process embryonic development ending in seed dormancy|GO:0009793|10852933|IMP  go_process sterol biosynthetic process|GO:0016126|10852933|IMP  go_process sterol biosynthetic process|GO:0016126|10852933|TAS  go_function sterol 24-C-methyltransferase activity|GO:0003838|10852933|IDA  go_function sterol 24-C-methyltransferase activity|GO:0003838|10852933|IGI  product SMT1 (STEROL METHYLTRANSFERASE 1); sterol 24-C-methyltransferase  note STEROL METHYLTRANSFERASE 1 (SMT1); FUNCTIONS IN: sterol 24-C-methyltransferase activity; INVOLVED IN: embryonic development ending in seed dormancy, sterol biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sterol methyltransferase C-terminal (InterPro:IPR013705), Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: SMT3 (STEROL METHYLTRANSFERASE 3); S-adenosylmethionine-dependent methyltransferase/ sterol 24-C-methyltransferase (TAIR:AT1G76090.1); Has 7566 Blast hits to 7564 proteins in 1286 species: Archae - 215; Bacteria - 4604; Metazoa - 94; Fungi - 296; Plants - 352; Viruses - 0; Other Eukaryotes - 2005 (source: NCBI BLink).  protein_id AT5G13710.2p  transcript_id AT5G13710.2  protein_id AT5G13710.2p  transcript_id AT5G13710.2  
At5g13720	chr5:004427960	0.0	W/4427960-4428214,4428317-4428394,4428481-4428580,4428674-4429029	AT5G13720.1  CDS  gene_syn MSH12.19, MSH12_19  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast inner membrane|GO:0009706|12177442|IDA  product unknown protein  note LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP022348 (InterPro:IPR016804), Uncharacterised protein family UPF0114 (InterPro:IPR005134); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19390.1); Has 294 Blast hits to 294 proteins in 98 species: Archae - 18; Bacteria - 168; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT5G13720.1p  transcript_id AT5G13720.1  protein_id AT5G13720.1p  transcript_id AT5G13720.1  
At5g13730	chr5:004430337	0.0	C/4430337-4430744,4429869-4430231,4429484-4429684,4429132-4429419	AT5G13730.1  CDS  gene_syn MSH12.20, MSH12_20, SIG4, SIGD, SIGMA FACTOR 4  gene SIG4  function Encodes sigma 4 factor, involved in regulating the activity of the plastid-encoded RNA polymerase PEP. Regulates the overall quantity of NDH complexes and thus influences NDH activity.  go_component chloroplast|GO:0009507||IEA  go_process transcription initiation|GO:0006352|10984613|TAS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  go_function sigma factor activity|GO:0016987|10984613|ISS  product SIG4 (SIGMA FACTOR 4); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor  note SIGMA FACTOR 4 (SIG4); FUNCTIONS IN: DNA-directed RNA polymerase activity, transcription factor activity, sigma factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, transcription initiation; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor, region 2 (InterPro:IPR013325), Winged helix repressor DNA-binding (InterPro:IPR011991), RNA polymerase sigma-70 region 3 (InterPro:IPR007624), RNA polymerase sigma-70 (InterPro:IPR014284), RNA polymerase sigma factor, regions 3 and 4 (InterPro:IPR013324), RNA polymerase sigma-70 factor (InterPro:IPR000943), RNA polymerase sigma-70 region 2 (InterPro:IPR007627), RNA polymerase sigma-70 region 4 (InterPro:IPR007630); BEST Arabidopsis thaliana protein match is: SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor (TAIR:AT1G08540.1); Has 16253 Blast hits to 16243 proteins in 1581 species: Archae - 0; Bacteria - 9759; Metazoa - 0; Fungi - 0; Plants - 147; Viruses - 10; Other Eukaryotes - 6337 (source: NCBI BLink).  protein_id AT5G13730.1p  transcript_id AT5G13730.1  protein_id AT5G13730.1p  transcript_id AT5G13730.1  
At5g13740	chr5:004432689	0.0	W/4432689-4432836,4433089-4433129,4433213-4433273,4433374-4433476,4433551-4433653,4433760-4433813,4433894-4433956,4434146-4434195,4434283-4434358,4434472-4434681,4435226-4435313,4435537-4435622,4435719-4435826,4435971-4436015,4436098-4436186,4436270-4436313,4436392-4436483	AT5G13740.1  CDS  gene_syn MSH12.21, MSH12_21, ZIF1, ZINC INDUCED FACILITATOR 1  gene ZIF1  go_component integral to membrane|GO:0016021||IEA  go_function tetracycline:hydrogen antiporter activity|GO:0015520||IEA  go_component membrane|GO:0016020||ISS  go_process response to nematode|GO:0009624|16478044|IEP  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product ZIF1 (ZINC INDUCED FACILITATOR 1); carbohydrate transmembrane transporter/ sugar:hydrogen symporter/ tetracycline:hydrogen antiporter  note ZINC INDUCED FACILITATOR 1 (ZIF1); FUNCTIONS IN: carbohydrate transmembrane transporter activity, tetracycline:hydrogen antiporter activity, sugar:hydrogen symporter activity; INVOLVED IN: response to nematode; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetracycline resistance protein, TetA (InterPro:IPR001958), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ZIFL1 (ZINC INDUCED FACILITATOR-like 1); tetracycline:hydrogen antiporter (TAIR:AT5G13750.1); Has 12205 Blast hits to 12095 proteins in 1547 species: Archae - 236; Bacteria - 8295; Metazoa - 573; Fungi - 1454; Plants - 178; Viruses - 0; Other Eukaryotes - 1469 (source: NCBI BLink).  protein_id AT5G13740.1p  transcript_id AT5G13740.1  protein_id AT5G13740.1p  transcript_id AT5G13740.1  
At5g13750	chr5:004438318	0.0	W/4438318-4438462,4438567-4438607,4438740-4438800,4438885-4438987,4439078-4439180,4439267-4439320,4439396-4439458,4439555-4439604,4439692-4439767,4439857-4440045,4440131-4440218,4440294-4440379,4440474-4440581,4440668-4440712,4440804-4440892,4441034-4441077,4441198-4441289	AT5G13750.1  CDS  gene_syn MXE10.2, MXE10_2, ZIFL1, ZINC INDUCED FACILITATOR-like 1  gene ZIFL1  go_component integral to membrane|GO:0016021||IEA  go_process tetracycline transport|GO:0015904||IEA  go_process response to antibiotic|GO:0046677||IEA  go_function tetracycline:hydrogen antiporter activity|GO:0015520||IEA  product ZIFL1 (ZINC INDUCED FACILITATOR-like 1); tetracycline:hydrogen antiporter  note ZINC INDUCED FACILITATOR-like 1 (ZIFL1); FUNCTIONS IN: tetracycline:hydrogen antiporter activity; INVOLVED IN: response to antibiotic, tetracycline transport; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetracycline resistance protein, TetA (InterPro:IPR001958), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ZIF1 (ZINC INDUCED FACILITATOR 1); carbohydrate transmembrane transporter/ sugar:hydrogen symporter/ tetracycline:hydrogen antiporter (TAIR:AT5G13740.1); Has 10811 Blast hits to 10619 proteins in 1540 species: Archae - 239; Bacteria - 7142; Metazoa - 566; Fungi - 1377; Plants - 204; Viruses - 0; Other Eukaryotes - 1283 (source: NCBI BLink).  protein_id AT5G13750.1p  transcript_id AT5G13750.1  protein_id AT5G13750.1p  transcript_id AT5G13750.1  
At5g13750	chr5:004438318	0.0	W/4438318-4438462,4438567-4438607,4438740-4438800,4438885-4438987,4439078-4439180,4439267-4439320,4439396-4439458,4439555-4439604,4439692-4439767,4439857-4440045,4440131-4440218,4440294-4440379,4440474-4440581,4440668-4440712,4440806-4440829	AT5G13750.3  CDS  gene_syn MXE10.2, MXE10_2, ZIFL1, ZINC INDUCED FACILITATOR-like 1  gene ZIFL1  go_component integral to membrane|GO:0016021||IEA  go_process tetracycline transport|GO:0015904||IEA  go_process response to antibiotic|GO:0046677||IEA  go_function tetracycline:hydrogen antiporter activity|GO:0015520||IEA  product ZIFL1 (ZINC INDUCED FACILITATOR-like 1); tetracycline:hydrogen antiporter  note ZINC INDUCED FACILITATOR-like 1 (ZIFL1); FUNCTIONS IN: tetracycline:hydrogen antiporter activity; INVOLVED IN: response to antibiotic, tetracycline transport; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetracycline resistance protein, TetA (InterPro:IPR001958), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ZIF1 (ZINC INDUCED FACILITATOR 1); carbohydrate transmembrane transporter/ sugar:hydrogen symporter/ tetracycline:hydrogen antiporter (TAIR:AT5G13740.1); Has 10047 Blast hits to 9890 proteins in 1520 species: Archae - 223; Bacteria - 6635; Metazoa - 473; Fungi - 1319; Plants - 184; Viruses - 0; Other Eukaryotes - 1213 (source: NCBI BLink).  protein_id AT5G13750.3p  transcript_id AT5G13750.3  protein_id AT5G13750.3p  transcript_id AT5G13750.3  
At5g13750	chr5:004438896	0.0	W/4438896-4438987,4439078-4439180,4439267-4439320,4439396-4439458,4439555-4439604,4439692-4439767,4439857-4440045,4440131-4440218,4440294-4440379,4440474-4440581,4440668-4440712,4440804-4440892,4441034-4441077,4441198-4441289	AT5G13750.2  CDS  gene_syn MXE10.2, MXE10_2, ZIFL1, ZINC INDUCED FACILITATOR-like 1  gene ZIFL1  go_component integral to membrane|GO:0016021||IEA  go_process tetracycline transport|GO:0015904||IEA  go_process response to antibiotic|GO:0046677||IEA  go_function tetracycline:hydrogen antiporter activity|GO:0015520||IEA  product ZIFL1 (ZINC INDUCED FACILITATOR-like 1); tetracycline:hydrogen antiporter  note ZINC INDUCED FACILITATOR-like 1 (ZIFL1); FUNCTIONS IN: tetracycline:hydrogen antiporter activity; INVOLVED IN: response to antibiotic, tetracycline transport; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetracycline resistance protein, TetA (InterPro:IPR001958), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ZIF1 (ZINC INDUCED FACILITATOR 1); carbohydrate transmembrane transporter/ sugar:hydrogen symporter/ tetracycline:hydrogen antiporter (TAIR:AT5G13740.1); Has 7909 Blast hits to 7822 proteins in 1439 species: Archae - 151; Bacteria - 5176; Metazoa - 397; Fungi - 1009; Plants - 173; Viruses - 0; Other Eukaryotes - 1003 (source: NCBI BLink).  protein_id AT5G13750.2p  transcript_id AT5G13750.2  protein_id AT5G13750.2p  transcript_id AT5G13750.2  
At5g13760	chr5:004442102	0.0	W/4442102-4442119,4442214-4442579,4442759-4443670,4444068-4444301,4444386-4444565	AT5G13760.1  CDS  gene_syn MXE10.1, MXE10_1  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04440.1); Has 3922 Blast hits to 2330 proteins in 261 species: Archae - 8; Bacteria - 162; Metazoa - 1248; Fungi - 426; Plants - 1294; Viruses - 339; Other Eukaryotes - 445 (source: NCBI BLink).  protein_id AT5G13760.1p  transcript_id AT5G13760.1  protein_id AT5G13760.1p  transcript_id AT5G13760.1  
At5g13770	chr5:004445461	0.0	W/4445461-4447290	AT5G13770.1  CDS  gene_syn MXE10.6, MXE10_6  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G42310.1); Has 12705 Blast hits to 4833 proteins in 154 species: Archae - 2; Bacteria - 2; Metazoa - 158; Fungi - 177; Plants - 11844; Viruses - 0; Other Eukaryotes - 522 (source: NCBI BLink).  protein_id AT5G13770.1p  transcript_id AT5G13770.1  protein_id AT5G13770.1p  transcript_id AT5G13770.1  
At5g13780	chr5:004448304	0.0	C/4448304-4448603,4447610-4447888	AT5G13780.1  CDS  gene_syn MXE10.7, MXE10_7  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_process metabolic process|GO:0008152||ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product GCN5-related N-acetyltransferase, putative  note GCN5-related N-acetyltransferase, putative; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: GCN5-related N-acetyltransferase (GNAT) family protein (TAIR:AT1G03150.1); Has 1600 Blast hits to 1599 proteins in 383 species: Archae - 137; Bacteria - 234; Metazoa - 600; Fungi - 262; Plants - 103; Viruses - 0; Other Eukaryotes - 264 (source: NCBI BLink).  protein_id AT5G13780.1p  transcript_id AT5G13780.1  protein_id AT5G13780.1p  transcript_id AT5G13780.1  
At5g13790	chr5:004450621	0.0	C/4450621-4450802,4450388-4450448,4450249-4450310,4450045-4450144,4449932-4449973,4449678-4449719,4449452-4449603,4449128-4449293	AT5G13790.1  CDS  gene_syn AGAMOUS-LIKE 15, AGL15, MADS-BOX PROTEIN AGL15, MXE10.8, MXE10_8  gene AGL15  function AGL15 (AGAMOUS-Like 15) is a member of the MADS domain family of regulatory factors. Although AGL15 is preferentially expressed during embryogenesis, AGL15 is also expressed in leaf primordia, shoot apical meristems and young floral buds, suggesting that AGL15 may play a role during post-germinative development. Transgenic plants that ectopically express AGL15 show delays in the transition to flowering, perianth abscission and senescence and fruit and seed maturation.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||NAS  go_component cytoplasm|GO:0005737|10318690|TAS  go_function DNA binding|GO:0003677|9951721|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL15 (AGAMOUS-LIKE 15); DNA binding / transcription factor  note AGAMOUS-LIKE 15 (AGL15); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGL18; transcription factor (TAIR:AT3G57390.1); Has 5112 Blast hits to 5109 proteins in 683 species: Archae - 0; Bacteria - 0; Metazoa - 553; Fungi - 216; Plants - 4279; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT5G13790.1p  transcript_id AT5G13790.1  protein_id AT5G13790.1p  transcript_id AT5G13790.1  
At5g13800	chr5:004453515	0.0	C/4453515-4454141,4452945-4453171,4452653-4452844,4452397-4452553,4452063-4452314	AT5G13800.1  CDS  gene_syn MAC12.25, MAC12_25  go_component chloroplast|GO:0009507||IEA  go_process chlorophyll catabolic process|GO:0015996|19304936|IMP  go_function hydrolase activity|GO:0016787||ISS  go_function pheophytinase activity|GO:0080124|19304936|IDA  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity, pheophytinase activity; INVOLVED IN: chlorophyll catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT4G36530.2); Has 2135 Blast hits to 2134 proteins in 430 species: Archae - 3; Bacteria - 1263; Metazoa - 102; Fungi - 2; Plants - 143; Viruses - 0; Other Eukaryotes - 622 (source: NCBI BLink).  protein_id AT5G13800.1p  transcript_id AT5G13800.1  protein_id AT5G13800.1p  transcript_id AT5G13800.1  
At5g13800	chr5:004453515	0.0	C/4453515-4454141,4452945-4453171,4452653-4452844,4452397-4452553,4452063-4452314	AT5G13800.2  CDS  gene_syn MAC12.25, MAC12_25  go_component chloroplast|GO:0009507||IEA  go_process chlorophyll catabolic process|GO:0015996|19304936|IMP  go_function hydrolase activity|GO:0016787||ISS  go_function pheophytinase activity|GO:0080124|19304936|IDA  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity, pheophytinase activity; INVOLVED IN: chlorophyll catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT4G36530.2); Has 2135 Blast hits to 2134 proteins in 430 species: Archae - 3; Bacteria - 1263; Metazoa - 102; Fungi - 2; Plants - 143; Viruses - 0; Other Eukaryotes - 622 (source: NCBI BLink).  protein_id AT5G13800.2p  transcript_id AT5G13800.2  protein_id AT5G13800.2p  transcript_id AT5G13800.2  
At5g13810	chr5:004455769	0.0	W/4455769-4456593	AT5G13810.1  CDS  gene_syn MAC12.24, MAC12_24  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  product glutaredoxin family protein  note glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin family protein (TAIR:AT3G57070.1); Has 425 Blast hits to 425 proteins in 66 species: Archae - 0; Bacteria - 21; Metazoa - 92; Fungi - 4; Plants - 202; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).  protein_id AT5G13810.1p  transcript_id AT5G13810.1  protein_id AT5G13810.1p  transcript_id AT5G13810.1  
At5g13820	chr5:004461694	0.0	W/4461694-4461777,4461866-4462580,4462668-4462841,4462930-4462983,4463059-4463138,4463239-4463480,4463603-4463923,4464012-4464075,4464167-4464355	AT5G13820.1  CDS  gene_syn ATBP-1, ATBP1, ATTBP1, H-PROTEIN PROMOTE, HPPBF-1, MAC12.23, MAC12_23, TBP1, TELOMERIC DNA BINDING PROTEIN 1  gene TBP1  function Encodes a protein that specifically binds plant telomeric DNA repeats. It has a single Myb telomeric DNA-binding domain in C-terminus that prefers the sequence TTTAGGG.  go_component chromosome, telomeric region|GO:0000781|10798613|IDA  go_component nucleus|GO:0005634||ISS  go_process telomere maintenance|GO:0000723|11513850|TAS  go_function DNA binding|GO:0003677|10798613|IDA  go_function DNA binding|GO:0003677|11513850|IDA  go_function DNA binding|GO:0003677||ISS  go_function double-stranded telomeric DNA binding|GO:0003691|11513850|IDA  product TBP1 (TELOMERIC DNA BINDING PROTEIN 1); DNA binding / double-stranded telomeric DNA binding  note TELOMERIC DNA BINDING PROTEIN 1 (TBP1); FUNCTIONS IN: DNA binding, double-stranded telomeric DNA binding; INVOLVED IN: telomere maintenance; LOCATED IN: chromosome, telomeric region, nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Ubiquitin (InterPro:IPR000626), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRFL9 (TRF-LIKE 9); DNA bending/ DNA binding / telomeric DNA binding (TAIR:AT3G12560.1); Has 184 Blast hits to 178 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 13; Plants - 160; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT5G13820.1p  transcript_id AT5G13820.1  protein_id AT5G13820.1p  transcript_id AT5G13820.1  
At5g13825	chr5:004465700	0.0	C/4465700-4465969,4465099-4465203	AT5G13825.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G13825.1p  transcript_id AT5G13825.1  protein_id AT5G13825.1p  transcript_id AT5G13825.1  
At5g13830	chr5:004467363	0.0	W/4467363-4467440,4467525-4467611,4467700-4467762,4467840-4467938,4468049-4468286,4468378-4468487	AT5G13830.1  CDS  gene_syn MAC12.22, MAC12_22  go_process rRNA processing|GO:0006364||IEA  go_process rRNA methylation|GO:0031167||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_function RNA methyltransferase activity|GO:0008173||IEA  go_component cellular_component|GO:0005575||ND  go_function methyltransferase activity|GO:0008168||ISS  product FtsJ-like methyltransferase family protein  note FtsJ-like methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, RNA methyltransferase activity; INVOLVED IN: rRNA processing, rRNA methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, flower, root, seed; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: 23S ribosomal RNA methyltransferase (InterPro:IPR016448), Ribosomal RNA methyltransferase J (InterPro:IPR015507), Ribosomal RNA methyltransferase RrmJ/FtsJ (InterPro:IPR002877); BEST Arabidopsis thaliana protein match is: FtsJ-like methyltransferase family protein (TAIR:AT4G25730.1); Has 3744 Blast hits to 3740 proteins in 908 species: Archae - 101; Bacteria - 1440; Metazoa - 289; Fungi - 251; Plants - 52; Viruses - 4; Other Eukaryotes - 1607 (source: NCBI BLink).  protein_id AT5G13830.1p  transcript_id AT5G13830.1  protein_id AT5G13830.1p  transcript_id AT5G13830.1  
At5g13840	chr5:004470215	0.0	C/4470215-4470706,4469995-4470117,4469799-4469903,4469470-4469712,4469051-4469347,4468831-4468962,4468677-4468730	AT5G13840.1  CDS  gene_syn FIZZY-RELATED 3, FZR3, MAC12.21, MAC12_21  gene FZR3  go_component chloroplast|GO:0009507||IEA  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_process signal transduction|GO:0007165||ISS  go_function signal transducer activity|GO:0004871||ISS  product FZR3 (FIZZY-RELATED 3); signal transducer  note FIZZY-RELATED 3 (FZR3); FUNCTIONS IN: signal transducer activity; INVOLVED IN: signal transduction; LOCATED IN: chloroplast, heterotrimeric G-protein complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: FZR2 (FIZZY-RELATED 2); signal transducer (TAIR:AT4G22910.1); Has 36052 Blast hits to 18440 proteins in 539 species: Archae - 52; Bacteria - 4990; Metazoa - 16346; Fungi - 7057; Plants - 2837; Viruses - 0; Other Eukaryotes - 4770 (source: NCBI BLink).  protein_id AT5G13840.1p  transcript_id AT5G13840.1  protein_id AT5G13840.1p  transcript_id AT5G13840.1  
At5g13845	chr5:004471048	0.0	W/4471048-4471119	AT5G13845.1  tRNA  gene_syn 67622.TRNA-LYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Lys (anticodon: TTT)  transcript_id AT5G13845.1  
At5g13850	chr5:004471361	0.0	W/4471361-4471417,4471667-4471739,4472101-4472231,4472323-4472676	AT5G13850.1  CDS  gene_syn MAC12.19, MAC12_19, NACA3, NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3  gene NACA3  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function molecular_function|GO:0003674||ND  product NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3)  note NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3 (NACA3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: cytosolic ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Nascent polypeptide-associated complex, alpha subunit (InterPro:IPR016641), Nascent polypeptide-associated complex NAC (InterPro:IPR002715); BEST Arabidopsis thaliana protein match is: nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative (TAIR:AT3G12390.1); Has 794 Blast hits to 784 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 341; Fungi - 176; Plants - 104; Viruses - 14; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT5G13850.1p  transcript_id AT5G13850.1  protein_id AT5G13850.1p  transcript_id AT5G13850.1  
At5g13860	chr5:004473212	0.0	C/4473212-4474318	AT5G13860.1  CDS  gene_syn ELC-Like, ELCH-like, MAC12.18, MAC12_18  gene ELC-Like  go_process protein modification process|GO:0006464||IEA  go_process protein transport|GO:0015031||IEA  go_process post-translational protein modification|GO:0043687||IEA  go_process regulation of protein metabolic process|GO:0051246||IEA  go_function small conjugating protein ligase activity|GO:0019787||IEA  go_component ESCRT I complex|GO:0000813|17090720|ISS  product ELC-Like (ELCH-like); small conjugating protein ligase  note ELCH-like (ELC-Like); FUNCTIONS IN: small conjugating protein ligase activity; INVOLVED IN: regulation of protein metabolic process, protein modification process, protein transport, post-translational protein modification; LOCATED IN: ESCRT I complex; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Tumour susceptibility gene 101 (InterPro:IPR008883), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), Steadiness box (InterPro:IPR017916); BEST Arabidopsis thaliana protein match is: ELC; ubiquitin binding (TAIR:AT3G12400.1); Has 422 Blast hits to 392 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 248; Fungi - 88; Plants - 31; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT5G13860.1p  transcript_id AT5G13860.1  protein_id AT5G13860.1p  transcript_id AT5G13860.1  
At5g13870	chr5:004476031	0.0	C/4476031-4476217,4475845-4475945,4475571-4475764,4475089-4475488	AT5G13870.1  CDS  gene_syn ENDOXYLOGLUCAN TRANSFERASE, ENDOXYLOGLUCAN TRANSFERASE A4, EXGT-A4, MAC12.33, MAC12_33  gene EXGT-A4  function EXGT-A4, endoxyloglucan transferase,  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process cellular glucan metabolic process|GO:0006073||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762||IEA  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4); hydrolase, acting on glycosyl bonds / hydrolase, hydrolyzing O-glycosyl compounds / xyloglucan:xyloglucosyl transferase  note ENDOXYLOGLUCAN TRANSFERASE A4 (EXGT-A4); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16, active site (InterPro:IPR008263), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: EXGT-A1 (ENDOXYLOGLUCAN TRANSFERASE); hydrolase, acting on glycosyl bonds / xyloglucan:xyloglucosyl transferase (TAIR:AT2G06850.1); Has 1324 Blast hits to 1315 proteins in 205 species: Archae - 2; Bacteria - 178; Metazoa - 0; Fungi - 238; Plants - 812; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).  protein_id AT5G13870.1p  transcript_id AT5G13870.1  protein_id AT5G13870.1p  transcript_id AT5G13870.1  
At5g13880	chr5:004477477	0.0	C/4477477-4478043	AT5G13880.1  CDS  gene_syn MAC12.16, MAC12_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47920.1); Has 35 Blast hits to 35 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G13880.1p  transcript_id AT5G13880.1  protein_id AT5G13880.1p  transcript_id AT5G13880.1  
At5g13887	chr5:004479397	0.0	C/4479397-4479591	AT5G13887.1  miRNA  gene_syn MICRORNA848A, MIR848A  gene MIR848A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UGACAUGGGACUGCCUAAGCUA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR848A (MICRORNA848A); miRNA  transcript_id AT5G13887.1  
At5g13890	chr5:004479940	0.0	C/4479940-4480872	AT5G13890.1  CDS  gene_syn MAC12.15, MAC12_15  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF716 (InterPro:IPR006904); Has 120 Blast hits to 118 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G13890.1p  transcript_id AT5G13890.1  protein_id AT5G13890.1p  transcript_id AT5G13890.1  
At5g13890	chr5:004479940	0.0	C/4479940-4480872	AT5G13890.2  CDS  gene_syn MAC12.15, MAC12_15  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF716 (InterPro:IPR006904); Has 120 Blast hits to 118 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G13890.2p  transcript_id AT5G13890.2  protein_id AT5G13890.2p  transcript_id AT5G13890.2  
At5g13890	chr5:004479940	0.0	C/4479940-4480872	AT5G13890.3  CDS  gene_syn MAC12.15, MAC12_15  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF716 (InterPro:IPR006904); Has 120 Blast hits to 118 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G13890.3p  transcript_id AT5G13890.3  protein_id AT5G13890.3p  transcript_id AT5G13890.3  
At5g13900	chr5:004481552	0.0	C/4481552-4481876,4481346-4481476	AT5G13900.1  CDS  gene_syn MAC12.14, MAC12_14  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to membrane; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT3G22600.1); Has 216 Blast hits to 214 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 216; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G13900.1p  transcript_id AT5G13900.1  protein_id AT5G13900.1p  transcript_id AT5G13900.1  
At5g13910	chr5:004482450	0.0	C/4482450-4483085	AT5G13910.1  CDS  gene_syn LEAFY PETIOLE, LEP, MAC12.13, MAC12_13  gene LEP  function Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (LEAFY PETIOLE). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and LEAFY PETIOLE. Acts as a positive regulator of gibberellic acid-induced germination.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to gibberellin stimulus|GO:0009739|16339853|IMP  go_process positive regulation of seed germination|GO:0010030|16339853|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product LEP (LEAFY PETIOLE); DNA binding / transcription factor  note LEAFY PETIOLE (LEP); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to gibberellin stimulus, positive regulation of seed germination, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: PUCHI; DNA binding / transcription factor (TAIR:AT5G18560.1); Has 3388 Blast hits to 3374 proteins in 212 species: Archae - 0; Bacteria - 4; Metazoa - 52; Fungi - 11; Plants - 3297; Viruses - 6; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT5G13910.1p  transcript_id AT5G13910.1  protein_id AT5G13910.1p  transcript_id AT5G13910.1  
At5g13917	chr5:004485168	0.0	C/4485168-4485311	AT5G13917.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G13917.1p  transcript_id AT5G13917.1  protein_id AT5G13917.1p  transcript_id AT5G13917.1  
At5g13920	chr5:004487236	0.0	C/4487236-4487433,4486983-4487144,4486581-4486908,4485931-4486490	AT5G13920.1  CDS  gene_syn MAC12.12, MAC12_12  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc knuckle (CCHC-type) family protein  note zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, GRF-type (InterPro:IPR010666); BEST Arabidopsis thaliana protein match is: zinc knuckle (CCHC-type) family protein (TAIR:AT1G54930.1); Has 113 Blast hits to 110 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 64; Fungi - 10; Plants - 35; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G13920.1p  transcript_id AT5G13920.1  protein_id AT5G13920.1p  transcript_id AT5G13920.1  
At5g13930	chr5:004488762	0.0	W/4488762-4488954,4489041-4490035	AT5G13930.1  CDS  gene_syn ATCHS, CHALCONE SYNTHASE, CHALCONE/STILBENE SYNTHASE, CHS, MAC12.28, MAC12_28, NARINGENIN-CHALCONE SYNTHASE, TRANSPARENT TESTA 4, TT4  gene TT4  function Encodes chalcone synthase (CHS), a key enzyme involved in the biosynthesis of flavonoids. Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of auxin transport and the modulation of root gravitropism.  go_component nucleus|GO:0005634|15817473|IDA  go_component endoplasmic reticulum|GO:0005783|11489181|IDA  go_component endoplasmic reticulum|GO:0005783|15817473|IDA  go_component plant-type vacuole membrane|GO:0009705|11489181|IDA  go_process response to oxidative stress|GO:0006979|9501110|IEP  go_process response to wounding|GO:0009611|16021335|IEP  go_process response to gravity|GO:0009629|16489132|IMP  go_process chalcone biosynthetic process|GO:0009715|8528278|IMP  go_process response to ethylene stimulus|GO:0009723|16489132|IMP  go_process response to sucrose stimulus|GO:0009744|16384906|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16021335|IEP  go_process flavonoid biosynthetic process|GO:0009813|3386631|ISS  go_process flavonoid biosynthetic process|GO:0009813|8528278|IMP  go_process auxin polar transport|GO:0009926|11402184|IMP  go_process response to UV-B|GO:0010224|12271060|IMP  go_process regulation of anthocyanin biosynthetic process|GO:0031540|15993620|IEP  go_function naringenin-chalcone synthase activity|GO:0016210|8528278|IMP  product TT4 (TRANSPARENT TESTA 4); naringenin-chalcone synthase  note TRANSPARENT TESTA 4 (TT4); FUNCTIONS IN: naringenin-chalcone synthase activity; INVOLVED IN: in 11 processes; LOCATED IN: plant-type vacuole membrane, endoplasmic reticulum, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Chalcone/stilbene synthase, N-terminal (InterPro:IPR001099), Polyketide synthase, type III (InterPro:IPR011141), Chalcone/stilbene synthase, active site (InterPro:IPR018088), Thiolase-like, subgroup (InterPro:IPR016038), Chalcone and stilbene synthases, C-terminal (InterPro:IPR012328); BEST Arabidopsis thaliana protein match is: chalcone and stilbene synthase family protein (TAIR:AT4G34850.1); Has 4317 Blast hits to 4310 proteins in 955 species: Archae - 0; Bacteria - 1209; Metazoa - 0; Fungi - 48; Plants - 2911; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT5G13930.1p  transcript_id AT5G13930.1  protein_id AT5G13930.1p  transcript_id AT5G13930.1  
At5g13940	chr5:004495465	0.0	C/4495465-4495585,4494916-4495204,4494518-4494659,4494374-4494413,4494075-4494160,4493882-4493995,4493752-4493786,4493488-4493624,4492700-4492794,4492511-4492624,4492333-4492437,4492177-4492248,4491970-4492082,4491740-4491865,4491590-4491658,4491413-4491500,4491260-4491331,4491095-4491195,4490895-4491012,4490762-4490821,4490566-4490679,4490263-4490481	AT5G13940.1  CDS  gene_syn MAC12.10, MAC12_10  go_component intracellular|GO:0005622||IEA  go_process proteolysis|GO:0006508||IEA  go_function aminopeptidase activity|GO:0004177||IEA  product aminopeptidase  note aminopeptidase; FUNCTIONS IN: aminopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Peptidase M17, leucyl aminopeptidase, C-terminal (InterPro:IPR000819); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19340.1); Has 111 Blast hits to 108 proteins in 31 species: Archae - 0; Bacteria - 30; Metazoa - 10; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT5G13940.1p  transcript_id AT5G13940.1  protein_id AT5G13940.1p  transcript_id AT5G13940.1  
At5g13950	chr5:004499889	0.0	C/4499889-4500206,4499654-4499790,4499344-4499457,4499171-4499254,4498769-4498918,4498534-4498672,4498081-4498241,4497864-4497987,4496196-4497788	AT5G13950.1  CDS  gene_syn MAC12.8, MAC12_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G45830.1); Has 93 Blast hits to 93 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 48; Fungi - 4; Plants - 36; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G13950.1p  transcript_id AT5G13950.1  protein_id AT5G13950.1p  transcript_id AT5G13950.1  
At5g13950	chr5:004499889	0.0	C/4499889-4500206,4499654-4499790,4499344-4499457,4499171-4499254,4498769-4498918,4498534-4498672,4498081-4498241,4497864-4497987,4496196-4497788	AT5G13950.2  CDS  gene_syn MAC12.8, MAC12_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G45830.1); Has 93 Blast hits to 93 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 48; Fungi - 4; Plants - 36; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G13950.2p  transcript_id AT5G13950.2  protein_id AT5G13950.2p  transcript_id AT5G13950.2  
At5g13960	chr5:004501688	0.0	W/4501688-4502050,4502155-4502193,4502389-4502443,4502583-4502689,4502799-4502975,4503125-4503223,4503400-4503498,4504263-4504312,4504394-4504485,4504570-4504729,4504960-4505065,4505270-4505452,4505546-4505776,4505866-4505979	AT5G13960.1  CDS  gene_syn KRYPTONITE, KYP, MAC12.7, MAC12_7, SDG33, SET DOMAIN PROTEIN 33, SU(VAR)3-9 HOMOLOG 4, SUVH4  gene SUVH4  function Encodes a histone 3 lysine 9 specific methyltransferase involved in the maintenance of DNA methylation. SUVH4/KYP is a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. In kyp mutants, there is a loss of CpNpG methylation. The protein was shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the latter two. There is also evidence that KYP/SUVH4 might be involved in the telomerase-independent process known as Alternative Lengthening of Telomeres.  go_component nucleus|GO:0005634||IEA  go_process maintenance of DNA methylation|GO:0010216|11898023|IDA  go_process histone methylation|GO:0016571|11898023|IDA  go_process peptidyl-lysine methylation|GO:0018022|11898023|IDA  go_process histone H3-K9 methylation|GO:0051567|17448460|IMP  go_function methyl-CpG binding|GO:0008327|17239600|IDA  go_function double-stranded methylated DNA binding|GO:0010385|17239600|IDA  go_function methyl-CpNpG binding|GO:0010428|17239600|IDA  go_function methyl-CpNpN binding|GO:0010429|17239600|IDA  go_function histone methyltransferase activity (H3-K9 specific)|GO:0046974|11898023|IDA  product SUVH4 (SU(VAR)3-9 HOMOLOG 4); double-stranded methylated DNA binding / histone methyltransferase(H3-K9 specific) / methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding  note SU(VAR)3-9 HOMOLOG 4 (SUVH4); FUNCTIONS IN: methyl-CpNpG binding, double-stranded methylated DNA binding, histone methyltransferase activity (H3-K9 specific), methyl-CpG binding, methyl-CpNpN binding; INVOLVED IN: maintenance of DNA methylation, histone methylation, histone H3-K9 methylation, peptidyl-lysine methylation; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), SRA-YDG (InterPro:IPR003105), Pre-SET zinc-binding region (InterPro:IPR007728), Post-SET zinc-binding region (InterPro:IPR003616); BEST Arabidopsis thaliana protein match is: SUVH5 (SU(VAR)3-9 HOMOLOG 5); histone methyltransferase (TAIR:AT2G35160.1); Has 3341 Blast hits to 3200 proteins in 321 species: Archae - 2; Bacteria - 270; Metazoa - 1827; Fungi - 289; Plants - 491; Viruses - 0; Other Eukaryotes - 462 (source: NCBI BLink).  protein_id AT5G13960.1p  transcript_id AT5G13960.1  protein_id AT5G13960.1p  transcript_id AT5G13960.1  
At5g13970	chr5:004507487	0.0	C/4507487-4507804,4507167-4507391,4506383-4507054	AT5G13970.1  CDS  gene_syn MAC12.6, MAC12_6  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13310.1); Has 608 Blast hits to 543 proteins in 119 species: Archae - 2; Bacteria - 47; Metazoa - 119; Fungi - 63; Plants - 38; Viruses - 17; Other Eukaryotes - 322 (source: NCBI BLink).  protein_id AT5G13970.1p  transcript_id AT5G13970.1  protein_id AT5G13970.1p  transcript_id AT5G13970.1  
At5g13980	chr5:004508626	0.0	W/4508626-4508826,4508916-4508999,4509162-4509250,4509333-4509507,4509586-4509705,4509800-4509886,4509969-4510040,4510115-4510228,4510368-4510468,4510541-4510634,4510710-4510877,4510966-4511040,4511171-4511236,4511322-4511378,4511461-4511680,4511760-4511899,4511978-4512058,4512169-4512228,4512315-4512386,4512538-4512585,4512671-4512790,4512883-4512948,4513073-4513185,4513266-4513350,4513454-4513564,4513651-4513746,4513842-4513889,4513926-4513928	AT5G13980.3  CDS  gene_syn MAC12.38, MAC12_38  go_component cell wall|GO:0005618|15593128|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process mannose metabolic process|GO:0006013||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function alpha-mannosidase activity|GO:0004559||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function mannosidase activity|GO:0015923||IEA  go_function carbohydrate binding|GO:0030246||IEA  go_function alpha-mannosidase activity|GO:0004559||ISS  product glycosyl hydrolase family 38 protein  note glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: apoplast, cell wall, plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central region (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 38 protein (TAIR:AT3G26720.2); Has 839 Blast hits to 807 proteins in 114 species: Archae - 3; Bacteria - 66; Metazoa - 582; Fungi - 12; Plants - 70; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).  protein_id AT5G13980.3p  transcript_id AT5G13980.3  protein_id AT5G13980.3p  transcript_id AT5G13980.3  
At5g13980	chr5:004508626	0.0	W/4508626-4508826,4508916-4508999,4509162-4509250,4509333-4509507,4509586-4509705,4509800-4509886,4509969-4510040,4510115-4510228,4510368-4510468,4510541-4510634,4510710-4510877,4510966-4511040,4511171-4511236,4511322-4511378,4511461-4511680,4511760-4511899,4511978-4512058,4512169-4512228,4512315-4512386,4512538-4512585,4512671-4512790,4512883-4512948,4513073-4513185,4513266-4513350,4513454-4513564,4513651-4513746,4513842-4513889,4513957-4514025,4514092-4514334	AT5G13980.1  CDS  gene_syn MAC12.38, MAC12_38  go_component cell wall|GO:0005618|15593128|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process mannose metabolic process|GO:0006013||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function alpha-mannosidase activity|GO:0004559||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function mannosidase activity|GO:0015923||IEA  go_function carbohydrate binding|GO:0030246||IEA  go_function alpha-mannosidase activity|GO:0004559||ISS  product glycosyl hydrolase family 38 protein  note glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: apoplast, cell wall, plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central region (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 38 protein (TAIR:AT3G26720.1); Has 847 Blast hits to 813 proteins in 116 species: Archae - 3; Bacteria - 66; Metazoa - 586; Fungi - 12; Plants - 73; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT5G13980.1p  transcript_id AT5G13980.1  protein_id AT5G13980.1p  transcript_id AT5G13980.1  
At5g13980	chr5:004508626	0.0	W/4508626-4508826,4508916-4508999,4509162-4509250,4509333-4509507,4509586-4509705,4509800-4509886,4509969-4510040,4510115-4510228,4510368-4510468,4510541-4510634,4510710-4510877,4510966-4511040,4511171-4511236,4511322-4511378,4511461-4511680,4511760-4511899,4511978-4512058,4512169-4512228,4512315-4512386,4512538-4512585,4512671-4512790,4512883-4512948,4513073-4513185,4513266-4513350,4513454-4513564,4513651-4513746,4513842-4513889,4513957-4514025,4514092-4514334	AT5G13980.2  CDS  gene_syn MAC12.38, MAC12_38  go_component cell wall|GO:0005618|15593128|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process mannose metabolic process|GO:0006013||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function alpha-mannosidase activity|GO:0004559||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function mannosidase activity|GO:0015923||IEA  go_function carbohydrate binding|GO:0030246||IEA  go_function alpha-mannosidase activity|GO:0004559||ISS  product glycosyl hydrolase family 38 protein  note glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: apoplast, cell wall, plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central region (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 38 protein (TAIR:AT3G26720.1); Has 847 Blast hits to 813 proteins in 116 species: Archae - 3; Bacteria - 66; Metazoa - 586; Fungi - 12; Plants - 73; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT5G13980.2p  transcript_id AT5G13980.2  protein_id AT5G13980.2p  transcript_id AT5G13980.2  
At5g13990	chr5:004514680	0.0	C/4514680-4516767	AT5G13990.1  CDS  gene_syn ATEXO70C2, MAC12.17, MAC12_17, exocyst subunit EXO70 family protein C2  gene ATEXO70C2  function A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.  go_component exocyst|GO:0000145||IEA  go_process exocytosis|GO:0006887||IEA  go_component exocyst|GO:0000145||ISS  go_process vesicle docking during exocytosis|GO:0006904||ISS  go_function protein binding|GO:0005515||ISS  product ATEXO70C2 (exocyst subunit EXO70 family protein C2); protein binding  note exocyst subunit EXO70 family protein C2 (ATEXO70C2); FUNCTIONS IN: protein binding; INVOLVED IN: exocytosis, vesicle docking during exocytosis; LOCATED IN: exocyst; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: ATEXO70C1 (exocyst subunit EXO70 family protein C1); protein binding (TAIR:AT5G13150.1); Has 592 Blast hits to 588 proteins in 101 species: Archae - 0; Bacteria - 2; Metazoa - 115; Fungi - 66; Plants - 376; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT5G13990.1p  transcript_id AT5G13990.1  protein_id AT5G13990.1p  transcript_id AT5G13990.1  
At5g14000	chr5:004518177	0.0	W/4518177-4518360,4518529-4518785,4518855-4519034	AT5G14000.1  CDS  gene_syn Arabidopsis NAC domain containing protein 84, MAC12.3, MAC12_3, anac084  gene anac084  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac084 (Arabidopsis NAC domain containing protein 84); transcription factor  note Arabidopsis NAC domain containing protein 84 (anac084); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC083 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 83); transcription factor (TAIR:AT5G13180.1); Has 1365 Blast hits to 1363 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1365; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G14000.1p  transcript_id AT5G14000.1  protein_id AT5G14000.1p  transcript_id AT5G14000.1  
At5g14010	chr5:004522260	0.0	W/4522260-4522745	AT5G14010.1  CDS  gene_syn MAC12.2, MAC12_2  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT5G48890.1); Has 343 Blast hits to 341 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 343; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G14010.1p  transcript_id AT5G14010.1  protein_id AT5G14010.1p  transcript_id AT5G14010.1  
At5g14011	chr5:004523016	0.0	C/4523016-4523114	AT5G14011.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G14011.1p  transcript_id AT5G14011.1  protein_id AT5G14011.1p  transcript_id AT5G14011.1  
At5g14020	chr5:004525615	0.0	C/4525615-4525819,4525465-4525539,4525325-4525386,4525075-4525225,4524897-4524993,4524755-4524821,4524563-4524661,4524347-4524439,4524082-4524236,4523909-4524013,4523730-4523826	AT5G14020.1  CDS  gene_syn MAC12.31, MAC12_31  go_component vacuole|GO:0005773|14760709|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  product unknown protein  note INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: vacuole; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: BRO1 (InterPro:IPR004328); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G73390.3); Has 53 Blast hits to 53 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G14020.1p  transcript_id AT5G14020.1  protein_id AT5G14020.1p  transcript_id AT5G14020.1  
At5g14030	chr5:004526878	0.0	W/4526878-4527059,4527368-4527466,4527551-4527659,4527828-4527899,4528036-4528041,4528134-4528253	AT5G14030.1  CDS  gene_syn MUA22.2, MUA22_2  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product translocon-associated protein beta (TRAPB) family protein  note translocon-associated protein beta (TRAPB) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translocon-associated beta (InterPro:IPR008856); Has 154 Blast hits to 154 proteins in 64 species: Archae - 0; Bacteria - 0; Metazoa - 124; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G14030.1p  transcript_id AT5G14030.1  protein_id AT5G14030.1p  transcript_id AT5G14030.1  
At5g14030	chr5:004526878	0.0	W/4526878-4527059,4527368-4527466,4527551-4527659,4527828-4527899,4528036-4528041,4528134-4528253	AT5G14030.2  CDS  gene_syn MUA22.2, MUA22_2  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product translocon-associated protein beta (TRAPB) family protein  note translocon-associated protein beta (TRAPB) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translocon-associated beta (InterPro:IPR008856); Has 154 Blast hits to 154 proteins in 64 species: Archae - 0; Bacteria - 0; Metazoa - 124; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G14030.2p  transcript_id AT5G14030.2  protein_id AT5G14030.2p  transcript_id AT5G14030.2  
At5g14030	chr5:004526878	0.0	W/4526878-4527059,4527368-4527466,4527551-4527659,4527828-4527899,4528036-4528041,4528134-4528253	AT5G14030.3  CDS  gene_syn MUA22.2, MUA22_2  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product translocon-associated protein beta (TRAPB) family protein  note translocon-associated protein beta (TRAPB) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translocon-associated beta (InterPro:IPR008856); Has 154 Blast hits to 154 proteins in 64 species: Archae - 0; Bacteria - 0; Metazoa - 124; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G14030.3p  transcript_id AT5G14030.3  protein_id AT5G14030.3p  transcript_id AT5G14030.3  
At5g14030	chr5:004526878	0.0	W/4526878-4527059,4527368-4527466,4527551-4527659,4527828-4527899,4528036-4528041,4528134-4528253	AT5G14030.4  CDS  gene_syn MUA22.2, MUA22_2  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product translocon-associated protein beta (TRAPB) family protein  note translocon-associated protein beta (TRAPB) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translocon-associated beta (InterPro:IPR008856); Has 154 Blast hits to 154 proteins in 64 species: Archae - 0; Bacteria - 0; Metazoa - 124; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G14030.4p  transcript_id AT5G14030.4  protein_id AT5G14030.4p  transcript_id AT5G14030.4  
At5g14035	chr5:004530474	0.0	W/4530474-4530546	AT5G14035.1  tRNA  gene_syn 67622.TRNA-LYS-2, 67623.TRNA-LYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Lys (anticodon: CTT)  transcript_id AT5G14035.1  
At5g14040	chr5:004532645	0.0	C/4532645-4532965,4531921-4532282,4531800-4531843,4531459-4531673,4531208-4531332,4531059-4531119	AT5G14040.1  CDS  gene_syn MUA22.4, MUA22_4  go_component cell wall|GO:0005618|16287169|IDA  go_component mitochondrion|GO:0005739|15276431|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process transport|GO:0006810||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_component plastid|GO:0009536|16618929|IDA  go_process transport|GO:0006810||ISS  go_function binding|GO:0005488||ISS  product mitochondrial phosphate transporter  note mitochondrial phosphate transporter; FUNCTIONS IN: binding; INVOLVED IN: transport; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: mitochondrial phosphate transporter, putative (TAIR:AT3G48850.1); Has 12348 Blast hits to 8451 proteins in 336 species: Archae - 0; Bacteria - 0; Metazoa - 6294; Fungi - 3202; Plants - 1869; Viruses - 3; Other Eukaryotes - 980 (source: NCBI BLink).  protein_id AT5G14040.1p  transcript_id AT5G14040.1  protein_id AT5G14040.1p  transcript_id AT5G14040.1  
At5g14050	chr5:004533539	0.0	W/4533539-4535179	AT5G14050.1  CDS  gene_syn MUA22.5, MUA22_5  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: TAF5 (TBP-ASSOCIATED FACTOR 5); nucleotide binding / transcription regulator (TAIR:AT5G25150.1); Has 4822 Blast hits to 3684 proteins in 283 species: Archae - 24; Bacteria - 1509; Metazoa - 1460; Fungi - 771; Plants - 200; Viruses - 2; Other Eukaryotes - 856 (source: NCBI BLink).  protein_id AT5G14050.1p  transcript_id AT5G14050.1  protein_id AT5G14050.1p  transcript_id AT5G14050.1  
At5g14060	chr5:004536143	0.0	W/4536143-4536532,4536626-4536708,4536812-4536852,4536961-4537115,4537285-4537434,4537608-4537703,4537775-4537891,4537973-4538092,4538170-4538262,4538343-4538465,4538548-4538664,4538747-4538809,4538907-4538993	AT5G14060.1  CDS  gene_syn ASPARTATE KINASE, CARAB-AK-LYS, MUA22.6, MUA22_6  gene CARAB-AK-LYS  function lysine-sensitive aspartate kinase  go_function aspartate kinase activity|GO:0004072||IEA  go_function amino acid binding|GO:0016597||IEA  go_process aspartate family amino acid biosynthetic process|GO:0009067|9207844|TAS  product CARAB-AK-LYS; amino acid binding / aspartate kinase  note CARAB-AK-LYS; FUNCTIONS IN: amino acid binding, aspartate kinase activity; INVOLVED IN: aspartate family amino acid biosynthetic process; CONTAINS InterPro DOMAIN/s: Aspartate kinase, conserved site (InterPro:IPR018042), Aspartate/glutamate/uridylate kinase (InterPro:IPR001048), Amino acid-binding ACT (InterPro:IPR002912), Aspartate kinase region (InterPro:IPR001341); BEST Arabidopsis thaliana protein match is: AK3 (ASPARTATE KINASE 3); aspartate kinase (TAIR:AT3G02020.1); Has 7180 Blast hits to 7164 proteins in 1347 species: Archae - 138; Bacteria - 3925; Metazoa - 4; Fungi - 101; Plants - 117; Viruses - 0; Other Eukaryotes - 2895 (source: NCBI BLink).  protein_id AT5G14060.1p  transcript_id AT5G14060.1  protein_id AT5G14060.1p  transcript_id AT5G14060.1  
At5g14060	chr5:004536143	0.0	W/4536143-4536532,4536626-4536708,4536812-4536852,4536961-4537115,4537285-4537434,4537608-4537703,4537775-4537891,4537973-4538092,4538170-4538262,4538343-4538465,4538548-4538664,4538747-4538809,4538907-4538993	AT5G14060.2  CDS  gene_syn ASPARTATE KINASE, CARAB-AK-LYS, MUA22.6, MUA22_6  gene CARAB-AK-LYS  function lysine-sensitive aspartate kinase  go_function aspartate kinase activity|GO:0004072||IEA  go_function amino acid binding|GO:0016597||IEA  go_process aspartate family amino acid biosynthetic process|GO:0009067|9207844|TAS  product CARAB-AK-LYS; amino acid binding / aspartate kinase  note CARAB-AK-LYS; FUNCTIONS IN: amino acid binding, aspartate kinase activity; INVOLVED IN: aspartate family amino acid biosynthetic process; CONTAINS InterPro DOMAIN/s: Aspartate kinase, conserved site (InterPro:IPR018042), Aspartate/glutamate/uridylate kinase (InterPro:IPR001048), Amino acid-binding ACT (InterPro:IPR002912), Aspartate kinase region (InterPro:IPR001341); BEST Arabidopsis thaliana protein match is: AK3 (ASPARTATE KINASE 3); aspartate kinase (TAIR:AT3G02020.1); Has 7180 Blast hits to 7164 proteins in 1347 species: Archae - 138; Bacteria - 3925; Metazoa - 4; Fungi - 101; Plants - 117; Viruses - 0; Other Eukaryotes - 2895 (source: NCBI BLink).  protein_id AT5G14060.2p  transcript_id AT5G14060.2  protein_id AT5G14060.2p  transcript_id AT5G14060.2  
At5g14070	chr5:004541915	0.0	W/4541915-4542337	AT5G14070.1  CDS  gene_syn MUA22.7, MUA22_7, ROXY2  gene ROXY2  function Encodes glutaredoxin ROXY2. ROXY2, together with ROXY1 (AT3G02000), controls anther development. roxy1 roxy2 double mutants are sterile and do not produce pollen.  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  go_component cellular_component|GO:0005575||ND  go_process negative regulation of transcription|GO:0016481|18036205|IEP  go_process anther development|GO:0048653|18036205|IGI  product ROXY2; electron carrier/ protein disulfide oxidoreductase  note ROXY2; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: anther development, negative regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: tapetum, hypocotyl, floral meristem, root, anther; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ROXY1; disulfide oxidoreductase (TAIR:AT3G02000.1); Has 658 Blast hits to 657 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 166; Fungi - 62; Plants - 421; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT5G14070.1p  transcript_id AT5G14070.1  protein_id AT5G14070.1p  transcript_id AT5G14070.1  
At5g14080	chr5:004543603	0.0	C/4543603-4545256,4543265-4543515	AT5G14080.1  CDS  gene_syn MUA22.8, MUA22_8  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G61990.1); Has 13332 Blast hits to 4753 proteins in 163 species: Archae - 3; Bacteria - 4; Metazoa - 208; Fungi - 164; Plants - 12407; Viruses - 0; Other Eukaryotes - 546 (source: NCBI BLink).  protein_id AT5G14080.1p  transcript_id AT5G14080.1  protein_id AT5G14080.1p  transcript_id AT5G14080.1  
At5g14090	chr5:004547230	0.0	W/4547230-4547235,4547308-4547374,4547863-4548620,4548809-4549034,4549195-4549214	AT5G14090.1  CDS  gene_syn MUA22.9, MUA22_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; Has 23 Blast hits to 23 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G14090.1p  transcript_id AT5G14090.1  protein_id AT5G14090.1p  transcript_id AT5G14090.1  
At5g14100	chr5:004551538	0.0	C/4551538-4551632,4551372-4551432,4551209-4551288,4551076-4551127,4550831-4550964,4550604-4550718,4550434-4550520,4550319-4550367,4550003-4550087,4549706-4549784	AT5G14100.1  CDS  gene_syn ATNAP14, MUA22.10, MUA22_10  gene ATNAP14  function member of NAP subfamily  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  product ATNAP14; transporter  note ATNAP14; FUNCTIONS IN: transporter activity; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATNAP11 (ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 11); transporter (TAIR:AT1G65410.1); Has 235771 Blast hits to 214483 proteins in 2592 species: Archae - 4406; Bacteria - 164441; Metazoa - 6458; Fungi - 3102; Plants - 2142; Viruses - 20; Other Eukaryotes - 55202 (source: NCBI BLink).  protein_id AT5G14100.1p  transcript_id AT5G14100.1  protein_id AT5G14100.1p  transcript_id AT5G14100.1  
At5g14105	chr5:004552747	0.0	C/4552747-4552901,4552169-4552244	AT5G14105.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G14105.1p  transcript_id AT5G14105.1  protein_id AT5G14105.1p  transcript_id AT5G14105.1  
At5g14110	chr5:004553964	0.0	C/4553964-4554176	AT5G14110.1  CDS  gene_syn MUA22.11, MUA22_11  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01950.1); Has 168 Blast hits to 167 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 168; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G14110.1p  transcript_id AT5G14110.1  protein_id AT5G14110.1p  transcript_id AT5G14110.1  
At5g14120	chr5:004556308	0.0	W/4556308-4556646,4556975-4557906,4557979-4558447	AT5G14120.1  CDS  gene_syn MUA22.12, MUA22_12  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  product nodulin family protein  note nodulin family protein; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nodulin family protein (TAIR:AT3G01930.2); Has 1558 Blast hits to 1511 proteins in 424 species: Archae - 7; Bacteria - 707; Metazoa - 14; Fungi - 166; Plants - 321; Viruses - 0; Other Eukaryotes - 343 (source: NCBI BLink).  protein_id AT5G14120.1p  transcript_id AT5G14120.1  protein_id AT5G14120.1p  transcript_id AT5G14120.1  
At5g14130	chr5:004559798	0.0	C/4559798-4560028,4559510-4559701,4558862-4559431	AT5G14130.1  CDS  gene_syn MUA22.13, MUA22_13  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, hypocotyl, fruit, root; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT4G37530.1); Has 2956 Blast hits to 2939 proteins in 222 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 109; Plants - 2801; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT5G14130.1p  transcript_id AT5G14130.1  protein_id AT5G14130.1p  transcript_id AT5G14130.1  
At5g14140	chr5:004561156	0.0	W/4561156-4561234,4561346-4561489,4561537-4561673,4562173-4562237,4562750-4562948,4563118-4563455,4563889-4564038,4564429-4564600	AT5G14140.1  CDS  gene_syn MUA22.14, MUA22_14  go_component intracellular|GO:0005622||IEA  go_component endomembrane system|GO:0012505||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G50080.1); Has 219 Blast hits to 213 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 107; Fungi - 55; Plants - 47; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G14140.1p  transcript_id AT5G14140.1  protein_id AT5G14140.1p  transcript_id AT5G14140.1  
At5g14150	chr5:004566593	0.0	C/4566593-4566653,4565989-4566498,4565246-4565826	AT5G14150.1  CDS  gene_syn MUA22.15, MUA22_15  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11420.1); Has 181 Blast hits to 150 proteins in 14 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 176; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G14150.1p  transcript_id AT5G14150.1  protein_id AT5G14150.1p  transcript_id AT5G14150.1  
At5g14160	chr5:004567333	0.0	W/4567333-4567657,4567734-4568467	AT5G14160.1  CDS  gene_syn MUA22.16, MUA22_16  go_process biological_process|GO:0008150||ND  product F-box family protein  note F-box family protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G05970.1); Has 177 Blast hits to 168 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G14160.1p  transcript_id AT5G14160.1  protein_id AT5G14160.1p  transcript_id AT5G14160.1  
At5g14170	chr5:004568913	0.0	C/4568913-4570444,4568696-4568768	AT5G14170.1  CDS  gene_syn CHC1, MUA22.17, MUA22_17  gene CHC1  function CHC1 is predicted to encode a protein that belongs to the chromodomain remodeling complex. Two RNAi knock-down lines have a dwarf phenotype and reduced rates of Agrobacterium-mediated transformation. The low rate of root-mediated transformation rate may result from altered root morphology or reduced root growth rates.  go_process root development|GO:0048364|17827277|IMP  go_function molecular_function|GO:0003674||ND  product CHC1  note CHC1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: root development; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 (InterPro:IPR003121); BEST Arabidopsis thaliana protein match is: SWIB complex BAF60b domain-containing protein (TAIR:AT3G01890.1); Has 970 Blast hits to 893 proteins in 174 species: Archae - 0; Bacteria - 66; Metazoa - 429; Fungi - 326; Plants - 89; Viruses - 4; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT5G14170.1p  transcript_id AT5G14170.1  protein_id AT5G14170.1p  transcript_id AT5G14170.1  
At5g14180	chr5:004574213	0.0	C/4574213-4574413,4573992-4574111,4572778-4572918,4572570-4572680,4572323-4572466,4572186-4572226,4572020-4572099,4571838-4571933,4571442-4571764	AT5G14180.1  CDS  gene_syn MPL1, MUA22.18, MUA22_18, MYZUS PERSICAE-INDUCED LIPASE 1  gene MPL1  go_component endomembrane system|GO:0012505||IEA  go_process glycerol biosynthetic process|GO:0006114||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function catalytic activity|GO:0003824||ISS  product MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1); catalytic  note MYZUS PERSICAE-INDUCED LIPASE 1 (MPL1); FUNCTIONS IN: catalytic activity; INVOLVED IN: glycerol biosynthetic process, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: AB-hydrolase associated lipase region (InterPro:IPR006693); BEST Arabidopsis thaliana protein match is: ATLIP1 (Arabidopsis thaliana lipase 1); galactolipase/ hydrolase/ phospholipase/ triacylglycerol lipase (TAIR:AT2G15230.1); Has 1536 Blast hits to 1505 proteins in 173 species: Archae - 0; Bacteria - 84; Metazoa - 1098; Fungi - 187; Plants - 91; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT5G14180.1p  transcript_id AT5G14180.1  protein_id AT5G14180.1p  transcript_id AT5G14180.1  
At5g14200	chr5:004576220	0.0	W/4576220-4576448,4576536-4576665,4576746-4576857,4576942-4577106,4577184-4577270,4577349-4577465,4577555-4577662,4577744-4577950,4578037-4578111	AT5G14200.1  CDS  gene_syn MUA22.20, MUA22_20  function The AtIMD1 is one out of 3 genes encoding the enzyme 3-isopropylmalate dehydrogenase involved in leucine biosynthesis in Arabidopsis. Its subcellular location has been targeted to plastids.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component plastid|GO:0009536|15849421|ISS  go_process metabolic process|GO:0008152||ISS  go_process leucine biosynthetic process|GO:0009098|15849421|IGI  go_function 3-isopropylmalate dehydrogenase activity|GO:0003862|15849421|IGI  go_function 3-isopropylmalate dehydrogenase activity|GO:0003862||ISS  product 3-isopropylmalate dehydrogenase, chloroplast, putative  note 3-isopropylmalate dehydrogenase, chloroplast, putative; FUNCTIONS IN: 3-isopropylmalate dehydrogenase activity; INVOLVED IN: leucine biosynthetic process, response to salt stress, metabolic process; LOCATED IN: chloroplast, chloroplast stroma, plastid; EXPRESSED IN: root, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: 3-isopropylmalate dehydrogenase (InterPro:IPR004429), Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804); BEST Arabidopsis thaliana protein match is: 3-isopropylmalate dehydrogenase, chloroplast, putative (TAIR:AT1G31180.1); Has 11282 Blast hits to 11282 proteins in 1568 species: Archae - 249; Bacteria - 4894; Metazoa - 487; Fungi - 594; Plants - 153; Viruses - 0; Other Eukaryotes - 4905 (source: NCBI BLink).  protein_id AT5G14200.1p  transcript_id AT5G14200.1  protein_id AT5G14200.1p  transcript_id AT5G14200.1  
At5g14200	chr5:004576220	0.0	W/4576220-4576448,4576536-4576665,4576746-4576857,4576942-4577106,4577184-4577270,4577349-4577465,4577555-4577662,4577744-4577962	AT5G14200.3  CDS  gene_syn MUA22.20, MUA22_20  function The AtIMD1 is one out of 3 genes encoding the enzyme 3-isopropylmalate dehydrogenase involved in leucine biosynthesis in Arabidopsis. Its subcellular location has been targeted to plastids.  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component plastid|GO:0009536|15849421|ISS  go_process metabolic process|GO:0008152||ISS  go_process leucine biosynthetic process|GO:0009098|15849421|IGI  go_function 3-isopropylmalate dehydrogenase activity|GO:0003862|15849421|IGI  go_function 3-isopropylmalate dehydrogenase activity|GO:0003862||ISS  product 3-isopropylmalate dehydrogenase, chloroplast, putative  note 3-isopropylmalate dehydrogenase, chloroplast, putative; FUNCTIONS IN: 3-isopropylmalate dehydrogenase activity; INVOLVED IN: leucine biosynthetic process, response to salt stress, metabolic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: root, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: 3-isopropylmalate dehydrogenase (InterPro:IPR004429), Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804); BEST Arabidopsis thaliana protein match is: 3-isopropylmalate dehydrogenase, chloroplast, putative (TAIR:AT1G31180.1); Has 11241 Blast hits to 11241 proteins in 1568 species: Archae - 249; Bacteria - 4878; Metazoa - 487; Fungi - 594; Plants - 153; Viruses - 0; Other Eukaryotes - 4880 (source: NCBI BLink).  protein_id AT5G14200.3p  transcript_id AT5G14200.3  protein_id AT5G14200.3p  transcript_id AT5G14200.3  
At5g14200	chr5:004576220	0.0	W/4576220-4576448,4576536-4576665,4576746-4576857,4576942-4577106,4577184-4577270,4577349-4577467,4577555-4577615	AT5G14200.2  CDS  gene_syn MUA22.20, MUA22_20  function The AtIMD1 is one out of 3 genes encoding the enzyme 3-isopropylmalate dehydrogenase involved in leucine biosynthesis in Arabidopsis. Its subcellular location has been targeted to plastids.  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component plastid|GO:0009536|15849421|ISS  go_process metabolic process|GO:0008152||ISS  go_process leucine biosynthetic process|GO:0009098|15849421|IGI  go_function 3-isopropylmalate dehydrogenase activity|GO:0003862|15849421|IGI  go_function 3-isopropylmalate dehydrogenase activity|GO:0003862||ISS  product 3-isopropylmalate dehydrogenase, chloroplast, putative  note 3-isopropylmalate dehydrogenase, chloroplast, putative; FUNCTIONS IN: 3-isopropylmalate dehydrogenase activity; INVOLVED IN: leucine biosynthetic process, response to salt stress, metabolic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: root, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: 3-isopropylmalate dehydrogenase (InterPro:IPR004429), Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804); BEST Arabidopsis thaliana protein match is: 3-isopropylmalate dehydrogenase, chloroplast, putative (TAIR:AT1G31180.1); Has 8546 Blast hits to 8546 proteins in 1481 species: Archae - 234; Bacteria - 3638; Metazoa - 410; Fungi - 585; Plants - 150; Viruses - 0; Other Eukaryotes - 3529 (source: NCBI BLink).  protein_id AT5G14200.2p  transcript_id AT5G14200.2  protein_id AT5G14200.2p  transcript_id AT5G14200.2  
At5g14210	chr5:004580000	0.0	C/4580000-4581374,4579777-4579910,4579449-4579692,4579144-4579355,4578825-4579073,4578503-4578727	AT5G14210.1  CDS  gene_syn MUA22.21, MUA22_21  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT3G03770.1); Has 72209 Blast hits to 41622 proteins in 1559 species: Archae - 19; Bacteria - 3186; Metazoa - 24185; Fungi - 1727; Plants - 37659; Viruses - 107; Other Eukaryotes - 5326 (source: NCBI BLink).  protein_id AT5G14210.1p  transcript_id AT5G14210.1  protein_id AT5G14210.1p  transcript_id AT5G14210.1  
At5g14220	chr5:004587342	0.0	C/4587342-4587369,4587181-4587232,4586891-4587026,4586717-4586782,4586540-4586590,4586375-4586431,4586100-4586173,4585974-4586010,4585739-4585804,4585604-4585644,4585122-4585254,4584821-4584994,4584670-4584744,4584345-4584468,4584147-4584255,4583950-4584024,4583747-4583853,4583506-4583627	AT5G14220.1  CDS  gene_syn F18O22.10, F18O22_10, HEMG2, MATERNAL EFFECT EMBRYO ARREST 61, MEE61, PPO2  gene HEMG2  function Encodes PPO2, a putative protoporphyrinogen oxidase based on sequence homology. Also known as MEE61 (maternal effect embryo arrest 61). mee61 mutant shows arrested endosperm development.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function protoporphyrinogen oxidase activity|GO:0004729||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process porphyrin biosynthetic process|GO:0006779|9238074|TAS  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  product HEMG2; electron carrier/ oxidoreductase/ protoporphyrinogen oxidase  note HEMG2; FUNCTIONS IN: protoporphyrinogen oxidase activity, electron carrier activity, oxidoreductase activity; INVOLVED IN: embryonic development ending in seed dormancy, porphyrin biosynthetic process; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), Adrenodoxin reductase (InterPro:IPR000759), Protoporphyrinogen oxidase (InterPro:IPR004572); BEST Arabidopsis thaliana protein match is: PPOX; protoporphyrinogen oxidase (TAIR:AT4G01690.1); Has 7890 Blast hits to 7890 proteins in 1094 species: Archae - 95; Bacteria - 3997; Metazoa - 918; Fungi - 200; Plants - 278; Viruses - 2; Other Eukaryotes - 2400 (source: NCBI BLink).  protein_id AT5G14220.1p  transcript_id AT5G14220.1  protein_id AT5G14220.1p  transcript_id AT5G14220.1  
At5g14230	chr5:004591883	0.0	W/4591883-4592182,4593627-4593902,4594002-4594139,4594234-4595775	AT5G14230.1  CDS  gene_syn F18O22.20, F18O22_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XBAT32; protein binding / zinc ion binding (TAIR:AT5G57740.1); Has 53583 Blast hits to 19876 proteins in 801 species: Archae - 55; Bacteria - 4629; Metazoa - 25794; Fungi - 3891; Plants - 1755; Viruses - 749; Other Eukaryotes - 16710 (source: NCBI BLink).  protein_id AT5G14230.1p  transcript_id AT5G14230.1  protein_id AT5G14230.1p  transcript_id AT5G14230.1  
At5g14240	chr5:004597321	0.0	C/4597321-4597568,4596894-4597037,4596588-4596793,4596223-4596395	AT5G14240.1  CDS  gene_syn F18O22.30, F18O22_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Phosducin (InterPro:IPR001200), Thioredoxin-like fold (InterPro:IPR012336); Has 750 Blast hits to 750 proteins in 282 species: Archae - 0; Bacteria - 2; Metazoa - 486; Fungi - 126; Plants - 51; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT5G14240.1p  transcript_id AT5G14240.1  protein_id AT5G14240.1p  transcript_id AT5G14240.1  
At5g14250	chr5:004597970	0.0	W/4597970-4598166,4598349-4598464,4598565-4598811,4598948-4599005,4599093-4599182,4599383-4599448,4599602-4599691,4599780-4599938,4600031-4600152,4600334-4600406,4600490-4600561	AT5G14250.1  CDS  gene_syn CONSTITUTIVE PHOTOMORPHOGENIC 13, COP13, COP9 SIGNALOSOME SUBUNIT 3, CSN3, F18O22.40, F18O22_40, FUS11, FUSCA 11  gene COP13  function Encodes subunit 3 of the COP9 signalosome.  go_component signalosome|GO:0008180|11019806|TAS  go_component signalosome|GO:0008180|9707402|IPI  go_process G2 phase of mitotic cell cycle|GO:0000085|18434413|IMP  go_process photomorphogenesis|GO:0009640|11019806|TAS  go_process cullin deneddylation|GO:0010388|17307927|IMP  go_function protein binding|GO:0005515|16844902|IPI  product COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13); protein binding  note CONSTITUTIVE PHOTOMORPHOGENIC 13 (COP13); FUNCTIONS IN: protein binding; INVOLVED IN: cullin deneddylation, photomorphogenesis, G2 phase of mitotic cell cycle; LOCATED IN: signalosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component region PCI (InterPro:IPR000717), Winged helix repressor DNA-binding (InterPro:IPR011991); BEST Arabidopsis thaliana protein match is: 26S proteasome regulatory subunit S3, putative (RPN3) (TAIR:AT1G75990.1); Has 588 Blast hits to 588 proteins in 145 species: Archae - 0; Bacteria - 0; Metazoa - 312; Fungi - 122; Plants - 87; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT5G14250.1p  transcript_id AT5G14250.1  protein_id AT5G14250.1p  transcript_id AT5G14250.1  
At5g14250	chr5:004597970	0.0	W/4597970-4598166,4598349-4598464,4598565-4598811,4598948-4599005,4599093-4599182,4599383-4599448,4599602-4599691,4599780-4599986	AT5G14250.2  CDS  gene_syn CONSTITUTIVE PHOTOMORPHOGENIC 13, COP13, COP9 SIGNALOSOME SUBUNIT 3, CSN3, F18O22.40, F18O22_40, FUS11, FUSCA 11  gene COP13  function Encodes subunit 3 of the COP9 signalosome.  go_component signalosome|GO:0008180|11019806|TAS  go_component signalosome|GO:0008180|9707402|IPI  go_process G2 phase of mitotic cell cycle|GO:0000085|18434413|IMP  go_process photomorphogenesis|GO:0009640|11019806|TAS  go_process cullin deneddylation|GO:0010388|17307927|IMP  go_function protein binding|GO:0005515|16844902|IPI  product COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13); protein binding  note CONSTITUTIVE PHOTOMORPHOGENIC 13 (COP13); FUNCTIONS IN: protein binding; INVOLVED IN: cullin deneddylation, photomorphogenesis, G2 phase of mitotic cell cycle; LOCATED IN: signalosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component region PCI (InterPro:IPR000717); Has 311 Blast hits to 311 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 196; Fungi - 50; Plants - 29; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT5G14250.2p  transcript_id AT5G14250.2  protein_id AT5G14250.2p  transcript_id AT5G14250.2  
At5g14260	chr5:004601139	0.0	W/4601139-4601504,4601622-4601697,4601859-4602064,4602145-4602231,4602332-4602424,4602639-4602793,4602883-4602967,4603064-4603150,4603222-4603341,4603508-4603609,4603706-4603873	AT5G14260.1  CDS  gene_syn F18O22.50, F18O22_50  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SET domain-containing protein  note SET domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), Rubisco LSMT substrate-binding (InterPro:IPR015353); BEST Arabidopsis thaliana protein match is: SET domain-containing protein (TAIR:AT3G07670.1); Has 473 Blast hits to 470 proteins in 97 species: Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 84; Plants - 171; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT5G14260.1p  transcript_id AT5G14260.1  protein_id AT5G14260.1p  transcript_id AT5G14260.1  
At5g14260	chr5:004601139	0.0	W/4601139-4601504,4601622-4601697,4601859-4602064,4602145-4602231,4602332-4602424,4602639-4602793,4602883-4602967,4603064-4603150,4603222-4603341,4603508-4603609,4603706-4603873	AT5G14260.2  CDS  gene_syn F18O22.50, F18O22_50  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SET domain-containing protein  note SET domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), Rubisco LSMT substrate-binding (InterPro:IPR015353); BEST Arabidopsis thaliana protein match is: SET domain-containing protein (TAIR:AT3G07670.1); Has 473 Blast hits to 470 proteins in 97 species: Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 84; Plants - 171; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT5G14260.2p  transcript_id AT5G14260.2  protein_id AT5G14260.2p  transcript_id AT5G14260.2  
At5g14260	chr5:004601139	0.0	W/4601139-4601504,4601622-4601697,4601859-4602064,4602145-4602231,4602332-4602424,4602639-4602793,4602883-4602967,4603064-4603150,4603222-4603341,4603508-4603609,4603706-4603873	AT5G14260.3  CDS  gene_syn F18O22.50, F18O22_50  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SET domain-containing protein  note SET domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), Rubisco LSMT substrate-binding (InterPro:IPR015353); BEST Arabidopsis thaliana protein match is: SET domain-containing protein (TAIR:AT3G07670.1); Has 473 Blast hits to 470 proteins in 97 species: Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 84; Plants - 171; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT5G14260.3p  transcript_id AT5G14260.3  protein_id AT5G14260.3p  transcript_id AT5G14260.3  
At5g14270	chr5:004605173	0.0	W/4605173-4606282,4606363-4606411,4606498-4606605,4606931-4606992,4607283-4607349,4607428-4607508,4607597-4607712,4607807-4607873,4607983-4608125,4608254-4608517	AT5G14270.1  CDS  gene_syn ATBET9, Arabidopsis thaliana Bromodomain and Extraterminal Domain protein 9, F18O22.60, F18O22_60  gene ATBET9  go_function DNA binding|GO:0003677||ISS  product ATBET9 (Arabidopsis thaliana Bromodomain and Extraterminal Domain protein 9); DNA binding  note Arabidopsis thaliana Bromodomain and Extraterminal Domain protein 9 (ATBET9); FUNCTIONS IN: DNA binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: ATBET10 (Arabidopsis thaliana BROMODOMAIN AND EXTRATERMINAL DOMAIN PROTEIN 10); DNA binding (TAIR:AT3G01770.1); Has 11908 Blast hits to 8459 proteins in 740 species: Archae - 12; Bacteria - 1993; Metazoa - 4437; Fungi - 1386; Plants - 593; Viruses - 35; Other Eukaryotes - 3452 (source: NCBI BLink).  protein_id AT5G14270.1p  transcript_id AT5G14270.1  protein_id AT5G14270.1p  transcript_id AT5G14270.1  
At5g14280	chr5:004609123	0.0	W/4609123-4609347,4609431-4609730,4609866-4610238,4610624-4611444	AT5G14280.1  CDS  gene_syn F18O22.70, F18O22_70  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function transcription regulator activity|GO:0030528|12535344|TAS  product DNA-binding storekeeper protein-related  note DNA-binding storekeeper protein-related; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592), TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27270.1); Has 198 Blast hits to 194 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 180; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT5G14280.1p  transcript_id AT5G14280.1  protein_id AT5G14280.1p  transcript_id AT5G14280.1  
At5g14290	chr5:004612212	0.0	C/4612212-4612610	AT5G14290.1  CDS  gene_syn F18O22.80, F18O22_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ribosomal protein L37, mitochondrial (InterPro:IPR013870); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01740.1); Has 31 Blast hits to 31 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G14290.1p  transcript_id AT5G14290.1  protein_id AT5G14290.1p  transcript_id AT5G14290.1  
At5g14300	chr5:004613102	0.0	W/4613102-4613389,4613562-4614023	AT5G14300.1  CDS  gene_syn ATPHB5, F18O22.90, F18O22_90, PROHIBITIN 5  gene ATPHB5  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|17883375|IDA  go_process biological_process|GO:0008150||ND  product ATPHB5 (PROHIBITIN 5)  note PROHIBITIN 5 (ATPHB5); INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Prohibitin (InterPro:IPR000163), Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: ATPHB4 (PROHIBITIN 4) (TAIR:AT3G27280.2); Has 2033 Blast hits to 2033 proteins in 553 species: Archae - 91; Bacteria - 773; Metazoa - 393; Fungi - 182; Plants - 132; Viruses - 7; Other Eukaryotes - 455 (source: NCBI BLink).  protein_id AT5G14300.1p  transcript_id AT5G14300.1  protein_id AT5G14300.1p  transcript_id AT5G14300.1  
At5g14310	chr5:004615592	0.0	W/4615592-4616391,4616882-4617422	AT5G14310.1  CDS  gene_syn Arabidopsis thaliana carboxyesterase 16, AtCXE16, F18O22.100, F18O22_100  gene AtCXE16  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function hydrolase activity|GO:0016787||IEA  product AtCXE16 (Arabidopsis thaliana carboxyesterase 16); hydrolase  note Arabidopsis thaliana carboxyesterase 16 (AtCXE16); FUNCTIONS IN: hydrolase activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDXG, active site (InterPro:IPR002168), Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: hydrolase (TAIR:AT3G27320.1); Has 4497 Blast hits to 4488 proteins in 761 species: Archae - 47; Bacteria - 2320; Metazoa - 309; Fungi - 396; Plants - 628; Viruses - 3; Other Eukaryotes - 794 (source: NCBI BLink).  protein_id AT5G14310.1p  transcript_id AT5G14310.1  protein_id AT5G14310.1p  transcript_id AT5G14310.1  
At5g14320	chr5:004618656	0.0	C/4618656-4618772,4618189-4618458	AT5G14320.2  CDS  gene_syn F18O22.110, F18O22_110  go_component chloroplast|GO:0009507|18431481|IDA  go_process translation|GO:0006412||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component small ribosomal subunit|GO:0015935||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 30S ribosomal protein S13, chloroplast (CS13)  note 30S ribosomal protein S13, chloroplast (CS13); FUNCTIONS IN: structural constituent of ribosome, RNA binding, nucleic acid binding; INVOLVED IN: translation; LOCATED IN: small ribosomal subunit, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13-like, H2TH (InterPro:IPR010979), Ribosomal protein S13 (InterPro:IPR001892); BEST Arabidopsis thaliana protein match is: 30S ribosomal protein S13, chloroplast, putative (TAIR:AT1G77750.1); Has 4613 Blast hits to 4613 proteins in 1350 species: Archae - 0; Bacteria - 2886; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 1687 (source: NCBI BLink).  protein_id AT5G14320.2p  transcript_id AT5G14320.2  protein_id AT5G14320.2p  transcript_id AT5G14320.2  
At5g14320	chr5:004618656	0.0	C/4618656-4618772,4618234-4618458,4617839-4618006	AT5G14320.1  CDS  gene_syn F18O22.110, F18O22_110  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process translation|GO:0006412||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component small ribosomal subunit|GO:0015935||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 30S ribosomal protein S13, chloroplast (CS13)  note 30S ribosomal protein S13, chloroplast (CS13); FUNCTIONS IN: structural constituent of ribosome, RNA binding, nucleic acid binding; INVOLVED IN: translation; LOCATED IN: small ribosomal subunit, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13-like, H2TH (InterPro:IPR010979), Ribosomal protein S13, conserved site (InterPro:IPR018269), Ribosomal protein S13 (InterPro:IPR001892); BEST Arabidopsis thaliana protein match is: 30S ribosomal protein S13, chloroplast, putative (TAIR:AT1G77750.1); Has 5735 Blast hits to 5735 proteins in 1744 species: Archae - 113; Bacteria - 2978; Metazoa - 171; Fungi - 134; Plants - 251; Viruses - 0; Other Eukaryotes - 2088 (source: NCBI BLink).  protein_id AT5G14320.1p  transcript_id AT5G14320.1  protein_id AT5G14320.1p  transcript_id AT5G14320.1  
At5g14330	chr5:004620439	0.0	C/4620439-4620551,4619947-4620220	AT5G14330.1  CDS  gene_syn F18O22.120, F18O22_120  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G14330.1p  transcript_id AT5G14330.1  protein_id AT5G14330.1p  transcript_id AT5G14330.1  
At5g14340	chr5:004623367	0.0	W/4623367-4623499,4623591-4623720,4624251-4624779	AT5G14340.1  CDS  gene_syn AtMYB40, F18O22.130, F18O22_130, myb domain protein 40  gene AtMYB40  function Member of the R2R3 factor gene family.  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product AtMYB40 (myb domain protein 40); DNA binding / transcription factor  note myb domain protein 40 (AtMYB40); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB43 (myb domain protein 43); DNA binding / transcription factor (TAIR:AT5G16600.1); Has 6214 Blast hits to 5709 proteins in 364 species: Archae - 0; Bacteria - 0; Metazoa - 696; Fungi - 271; Plants - 3721; Viruses - 6; Other Eukaryotes - 1520 (source: NCBI BLink).  protein_id AT5G14340.1p  transcript_id AT5G14340.1  protein_id AT5G14340.1p  transcript_id AT5G14340.1  
At5g14345	chr5:004626572	0.0	C/4626572-4626722,4626175-4626461	AT5G14345.1  CDS  function Encodes a Uclacyanin/Basic blue family protein  go_component endomembrane system|GO:0012505||IEA  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  product copper ion binding / electron carrier  note copper ion binding / electron carrier; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: plastocyanin-like domain-containing protein (TAIR:AT3G18590.1); Has 669 Blast hits to 662 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 669; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G14345.1p  transcript_id AT5G14345.1  protein_id AT5G14345.1p  transcript_id AT5G14345.1  
At5g14350	chr5:004628494	0.0	C/4628494-4628703,4628355-4628428,4627651-4627731,4627140-4627500	AT5G14350.1  CDS  gene_syn F18O22.140, F18O22_140  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G46610.1).  protein_id AT5G14350.1p  transcript_id AT5G14350.1  protein_id AT5G14350.1p  transcript_id AT5G14350.1  
At5g14360	chr5:004631038	0.0	W/4631038-4631311,4631424-4631641	AT5G14360.1  CDS  gene_syn F18O22.150, F18O22_150  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product ubiquitin family protein  note ubiquitin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: ubiquitin family protein (TAIR:AT5G40630.1); Has 122 Blast hits to 122 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 110; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G14360.1p  transcript_id AT5G14360.1  protein_id AT5G14360.1p  transcript_id AT5G14360.1  
At5g14370	chr5:004632854	0.0	C/4632854-4633651,4632346-4632537,4632147-4632176	AT5G14370.1  CDS  gene_syn F18O22.160, F18O22_160  go_component chloroplast|GO:0009507||IEA  product unknown protein  note LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CIL (TAIR:AT4G25990.1); Has 1815 Blast hits to 1506 proteins in 139 species: Archae - 0; Bacteria - 8; Metazoa - 291; Fungi - 53; Plants - 1145; Viruses - 0; Other Eukaryotes - 318 (source: NCBI BLink).  protein_id AT5G14370.1p  transcript_id AT5G14370.1  protein_id AT5G14370.1p  transcript_id AT5G14370.1  
At5g14380	chr5:004636088	0.0	C/4636088-4636540	AT5G14380.1  CDS  gene_syn AGP6, Arabinogalactan proteins 6, F18O22.170, F18O22_170  gene AGP6  function Encodes an arabinogalactan protein that is expressed in pollen, pollen sac and pollen tube. Loss of AGP6 function results in decreased fertility due to defects in pollen tube growth.  go_component extracellular matrix|GO:0031012|10451111|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process pollen tube growth|GO:0009860|18644001|IMP  product AGP6 (Arabinogalactan proteins 6)  note Arabinogalactan proteins 6 (AGP6); INVOLVED IN: pollen tube growth; LOCATED IN: extracellular matrix, anchored to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; Has 34649 Blast hits to 14029 proteins in 999 species: Archae - 88; Bacteria - 8094; Metazoa - 7939; Fungi - 4132; Plants - 3131; Viruses - 1411; Other Eukaryotes - 9854 (source: NCBI BLink).  protein_id AT5G14380.1p  transcript_id AT5G14380.1  protein_id AT5G14380.1p  transcript_id AT5G14380.1  
At5g14390	chr5:004639274	0.0	C/4639274-4639575,4638605-4638641,4638268-4638504,4638128-4638175,4637551-4638036	AT5G14390.1  CDS  gene_syn F18O22.180, F18O22_180  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01690.1); Has 2904 Blast hits to 2898 proteins in 507 species: Archae - 0; Bacteria - 766; Metazoa - 578; Fungi - 129; Plants - 154; Viruses - 6; Other Eukaryotes - 1271 (source: NCBI BLink).  protein_id AT5G14390.1p  transcript_id AT5G14390.1  protein_id AT5G14390.1p  transcript_id AT5G14390.1  
At5g14400	chr5:004644128	0.0	W/4644128-4644382,4644460-4644612,4644875-4645126,4645211-4645297,4645465-4645489,4645653-4645759,4645907-4646028,4646280-4646382	AT5G14400.1  CDS  gene_syn CYP724A1, F18O22.190, F18O22_190  gene CYP724A1  function member of CYP724A  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function oxygen binding|GO:0019825||ISS  product CYP724A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP724A1; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: DWF4 (DWARF 4); steroid 22-alpha hydroxylase (TAIR:AT3G50660.1); Has 16413 Blast hits to 16391 proteins in 984 species: Archae - 19; Bacteria - 1744; Metazoa - 7633; Fungi - 2318; Plants - 3998; Viruses - 3; Other Eukaryotes - 698 (source: NCBI BLink).  protein_id AT5G14400.1p  transcript_id AT5G14400.1  protein_id AT5G14400.1p  transcript_id AT5G14400.1  
At5g14410	chr5:004647292	0.0	C/4647292-4647398,4646897-4647191	AT5G14410.1  CDS  gene_syn F18O22.200, F18O22_200  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 11 Blast hits to 11 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G14410.1p  transcript_id AT5G14410.1  protein_id AT5G14410.1p  transcript_id AT5G14410.1  
At5g14420	chr5:004650240	0.0	C/4650240-4650563,4650025-4650109,4649686-4649940,4649506-4649603,4649350-4649429,4649147-4649252,4648952-4649079,4648678-4648870,4648526-4648582,4648355-4648435	AT5G14420.1  CDS  gene_syn F18O22.210, F18O22_210, RGLG2, RING domain Ligase2  gene RGLG2  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component plasma membrane|GO:0005886|17586653|IDA  go_process cytokinin metabolic process|GO:0009690|17586653|IGI  go_process auxin metabolic process|GO:0009850|17586653|IGI  go_function ubiquitin-protein ligase activity|GO:0004842|15644464|IDA  product RGLG2 (RING domain Ligase2); ubiquitin-protein ligase  note RING domain Ligase2 (RGLG2); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: N-terminal protein myristoylation, cytokinin metabolic process, auxin metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Copine (InterPro:IPR010734), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: RGLG1 (RING domain Ligase1); protein binding / zinc ion binding (TAIR:AT3G01650.1); Has 1866 Blast hits to 1803 proteins in 167 species: Archae - 0; Bacteria - 29; Metazoa - 1158; Fungi - 48; Plants - 274; Viruses - 50; Other Eukaryotes - 307 (source: NCBI BLink).  protein_id AT5G14420.1p  transcript_id AT5G14420.1  protein_id AT5G14420.1p  transcript_id AT5G14420.1  
At5g14420	chr5:004650240	0.0	C/4650240-4650563,4650025-4650109,4649686-4649940,4649506-4649603,4649350-4649429,4649147-4649252,4648952-4649079,4648678-4648870,4648526-4648582,4648355-4648435	AT5G14420.2  CDS  gene_syn F18O22.210, F18O22_210, RGLG2, RING domain Ligase2  gene RGLG2  go_component plasma membrane|GO:0005886|17586653|IDA  go_process cytokinin metabolic process|GO:0009690|17586653|IGI  go_process auxin metabolic process|GO:0009850|17586653|IGI  go_function ubiquitin-protein ligase activity|GO:0004842|15644464|IDA  product RGLG2 (RING domain Ligase2); ubiquitin-protein ligase  note RING domain Ligase2 (RGLG2); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: cytokinin metabolic process, auxin metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Copine (InterPro:IPR010734), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: RGLG1 (RING domain Ligase1); protein binding / zinc ion binding (TAIR:AT3G01650.1); Has 1866 Blast hits to 1803 proteins in 167 species: Archae - 0; Bacteria - 29; Metazoa - 1158; Fungi - 48; Plants - 274; Viruses - 50; Other Eukaryotes - 307 (source: NCBI BLink).  protein_id AT5G14420.2p  transcript_id AT5G14420.2  protein_id AT5G14420.2p  transcript_id AT5G14420.2  
At5g14420	chr5:004650240	0.0	C/4650240-4650563,4650025-4650109,4649686-4649940,4649506-4649603,4649350-4649429,4649147-4649252,4648952-4649079,4648678-4648870,4648526-4648582,4648355-4648435	AT5G14420.3  CDS  gene_syn F18O22.210, F18O22_210, RGLG2, RING domain Ligase2  gene RGLG2  go_component plasma membrane|GO:0005886|17586653|IDA  go_process cytokinin metabolic process|GO:0009690|17586653|IGI  go_process auxin metabolic process|GO:0009850|17586653|IGI  go_function ubiquitin-protein ligase activity|GO:0004842|15644464|IDA  product RGLG2 (RING domain Ligase2); ubiquitin-protein ligase  note RING domain Ligase2 (RGLG2); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: cytokinin metabolic process, auxin metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Copine (InterPro:IPR010734), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: RGLG1 (RING domain Ligase1); protein binding / zinc ion binding (TAIR:AT3G01650.1); Has 1866 Blast hits to 1803 proteins in 167 species: Archae - 0; Bacteria - 29; Metazoa - 1158; Fungi - 48; Plants - 274; Viruses - 50; Other Eukaryotes - 307 (source: NCBI BLink).  protein_id AT5G14420.3p  transcript_id AT5G14420.3  protein_id AT5G14420.3p  transcript_id AT5G14420.3  
At5g14420	chr5:004650240	0.0	C/4650240-4650563,4650025-4650109,4649686-4649940,4649506-4649603,4649350-4649429,4649147-4649252,4648952-4649079,4648678-4648870,4648526-4648582,4648355-4648435	AT5G14420.4  CDS  gene_syn F18O22.210, F18O22_210, RGLG2, RING domain Ligase2  gene RGLG2  go_component plasma membrane|GO:0005886|17586653|IDA  go_process cytokinin metabolic process|GO:0009690|17586653|IGI  go_process auxin metabolic process|GO:0009850|17586653|IGI  go_function ubiquitin-protein ligase activity|GO:0004842|15644464|IDA  product RGLG2 (RING domain Ligase2); ubiquitin-protein ligase  note RING domain Ligase2 (RGLG2); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: cytokinin metabolic process, auxin metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Copine (InterPro:IPR010734), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: RGLG1 (RING domain Ligase1); protein binding / zinc ion binding (TAIR:AT3G01650.1); Has 1866 Blast hits to 1803 proteins in 167 species: Archae - 0; Bacteria - 29; Metazoa - 1158; Fungi - 48; Plants - 274; Viruses - 50; Other Eukaryotes - 307 (source: NCBI BLink).  protein_id AT5G14420.4p  transcript_id AT5G14420.4  protein_id AT5G14420.4p  transcript_id AT5G14420.4  
At5g14430	chr5:004653092	0.0	W/4653092-4653334,4653472-4653628,4653709-4653899,4654227-4654821,4654909-4655021,4655133-4655353,4655423-4655741	AT5G14430.2  CDS  gene_syn F18O22.220, F18O22_220  go_component plasma membrane|GO:0005886|17151019|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  product dehydration-responsive protein-related  note dehydration-responsive protein-related; LOCATED IN: Golgi apparatus, plasma membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive protein-related (TAIR:AT4G14360.2); Has 583 Blast hits to 572 proteins in 73 species: Archae - 0; Bacteria - 103; Metazoa - 0; Fungi - 0; Plants - 469; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT5G14430.2p  transcript_id AT5G14430.2  protein_id AT5G14430.2p  transcript_id AT5G14430.2  
At5g14430	chr5:004653092	0.0	W/4653092-4653334,4653472-4653636,4653717-4653899,4654227-4654821,4654909-4655021,4655133-4655353,4655423-4655741	AT5G14430.1  CDS  gene_syn F18O22.220, F18O22_220  go_component plasma membrane|GO:0005886|17151019|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  product dehydration-responsive protein-related  note dehydration-responsive protein-related; LOCATED IN: Golgi apparatus, plasma membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive protein-related (TAIR:AT4G14360.2); Has 583 Blast hits to 572 proteins in 73 species: Archae - 0; Bacteria - 103; Metazoa - 0; Fungi - 0; Plants - 469; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT5G14430.1p  transcript_id AT5G14430.1  protein_id AT5G14430.1p  transcript_id AT5G14430.1  
At5g14440	chr5:004657569	0.0	C/4657569-4657807,4657141-4657238,4656699-4657028,4656498-4656597,4656065-4656173	AT5G14440.2  CDS  gene_syn F18O22.230, F18O22_230  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Surfeit locus 2 (InterPro:IPR008833); BEST Arabidopsis thaliana protein match is: surfeit locus protein 2 family protein / SURF2 family protein (TAIR:AT5G40570.1); Has 6513 Blast hits to 4273 proteins in 255 species: Archae - 4; Bacteria - 122; Metazoa - 2676; Fungi - 730; Plants - 236; Viruses - 90; Other Eukaryotes - 2655 (source: NCBI BLink).  protein_id AT5G14440.2p  transcript_id AT5G14440.2  protein_id AT5G14440.2p  transcript_id AT5G14440.2  
At5g14440	chr5:004657569	0.0	C/4657569-4657807,4657141-4657238,4656699-4657028,4656498-4656597,4656065-4656176	AT5G14440.1  CDS  gene_syn F18O22.230, F18O22_230  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Surfeit locus 2 (InterPro:IPR008833); BEST Arabidopsis thaliana protein match is: surfeit locus protein 2 family protein / SURF2 family protein (TAIR:AT5G40570.1); Has 6533 Blast hits to 4299 proteins in 259 species: Archae - 4; Bacteria - 127; Metazoa - 2727; Fungi - 698; Plants - 260; Viruses - 77; Other Eukaryotes - 2640 (source: NCBI BLink).  protein_id AT5G14440.1p  transcript_id AT5G14440.1  protein_id AT5G14440.1p  transcript_id AT5G14440.1  
At5g14450	chr5:004658488	0.0	W/4658488-4658752,4658863-4659072,4659161-4659333,4659422-4659695,4659787-4660034	AT5G14450.1  CDS  gene_syn F18O22.240, F18O22_240  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT3G26430.1); Has 1630 Blast hits to 1608 proteins in 80 species: Archae - 0; Bacteria - 59; Metazoa - 1; Fungi - 11; Plants - 1557; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G14450.1p  transcript_id AT5G14450.1  protein_id AT5G14450.1p  transcript_id AT5G14450.1  
At5g14460	chr5:004661553	0.0	C/4661553-4662543,4661406-4661461,4661242-4661324,4661085-4661163,4660885-4660995,4660696-4660805,4660521-4660604,4660404-4660441,4660239-4660309	AT5G14460.1  CDS  gene_syn F18O22.250, F18O22_250  go_component chloroplast|GO:0009507||IEA  go_process pseudouridine synthesis|GO:0001522||IEA  go_process tRNA processing|GO:0008033||IEA  go_process tRNA pseudouridine synthesis|GO:0031119||IEA  go_process RNA modification|GO:0009451||ISS  go_function transporter activity|GO:0005215||ISS  go_function pseudouridine synthase activity|GO:0009982|18599582|TAS  product pseudouridine synthase/ transporter  note pseudouridine synthase/ transporter; FUNCTIONS IN: pseudouridine synthase activity, transporter activity; INVOLVED IN: tRNA processing, pseudouridine synthesis, RNA modification, tRNA pseudouridine synthesis; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: tRNA pseudouridine synthase B, N-terminal, bacterial-type (InterPro:IPR014780), tRNA pseudouridine synthase B, N-terminal (InterPro:IPR002501); BEST Arabidopsis thaliana protein match is: NAP57 (Arabidopsis thaliana homologue of NAP57); pseudouridine synthase (TAIR:AT3G57150.1); Has 5291 Blast hits to 5291 proteins in 1638 species: Archae - 188; Bacteria - 2754; Metazoa - 244; Fungi - 190; Plants - 55; Viruses - 0; Other Eukaryotes - 1860 (source: NCBI BLink).  protein_id AT5G14460.1p  transcript_id AT5G14460.1  protein_id AT5G14460.1p  transcript_id AT5G14460.1  
At5g14470	chr5:004664076	0.0	C/4664076-4664177,4663794-4663985,4663589-4663705,4663348-4663508,4663029-4663275	AT5G14470.1  CDS  gene_syn F18O22.260, F18O22_260  go_component cytoplasm|GO:0005737||IEA  go_process metabolic process|GO:0008152||IEA  go_process phosphorylation|GO:0016310||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||IEA  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_function galactokinase activity|GO:0004335||ISS  go_function ATP binding|GO:0005524||ISS  product GHMP kinase-related  note GHMP kinase-related; FUNCTIONS IN: kinase activity, phosphotransferase activity, alcohol group as acceptor, galactokinase activity, ATP binding; INVOLVED IN: metabolic process, phosphorylation; LOCATED IN: cytoplasm; EXPRESSED IN: inflorescence meristem, flower, carpel, pollen tube; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Mevalonate and galactokinase (InterPro:IPR006206), GHMP kinase (InterPro:IPR006204), GHMP kinase, C-terminal (InterPro:IPR013750); BEST Arabidopsis thaliana protein match is: GHMP kinase family protein (TAIR:AT3G01640.1); Has 231 Blast hits to 231 proteins in 72 species: Archae - 22; Bacteria - 86; Metazoa - 11; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT5G14470.1p  transcript_id AT5G14470.1  protein_id AT5G14470.1p  transcript_id AT5G14470.1  
At5g14480	chr5:004667984	0.0	W/4667984-4668046,4668593-4669693	AT5G14480.1  CDS  gene_syn T15N1.3  go_component membrane|GO:0016020||IEA  go_process protein amino acid N-linked glycosylation|GO:0006487||IEA  go_function acetylglucosaminyltransferase activity|GO:0008375||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyl transferase family 17 protein  note glycosyl transferase family 17 protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: protein amino acid N-linked glycosylation; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 17 (InterPro:IPR006813); BEST Arabidopsis thaliana protein match is: glycosyl transferase family 17 protein (TAIR:AT3G27540.1); Has 988 Blast hits to 988 proteins in 56 species: Archae - 0; Bacteria - 24; Metazoa - 50; Fungi - 23; Plants - 67; Viruses - 4; Other Eukaryotes - 820 (source: NCBI BLink).  protein_id AT5G14480.1p  transcript_id AT5G14480.1  protein_id AT5G14480.1p  transcript_id AT5G14480.1  
At5g14490	chr5:004671923	0.0	C/4671923-4672072,4671643-4671829,4671081-4671568,4670779-4671006	AT5G14490.1  CDS  gene_syn Arabidopsis NAC domain containing protein 85, T15N1.4, anac085  gene anac085  go_process regulation of transcription|GO:0045449||IEA  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac085 (Arabidopsis NAC domain containing protein 85); transcription factor  note Arabidopsis NAC domain containing protein 85 (anac085); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac044 (Arabidopsis NAC domain containing protein 44); transcription factor (TAIR:AT3G01600.1); Has 1092 Blast hits to 1090 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1092; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G14490.1p  transcript_id AT5G14490.1  protein_id AT5G14490.1p  transcript_id AT5G14490.1  
At5g14495	chr5:004673900	0.0	W/4673900-4673971	AT5G14495.1  tRNA  gene_syn 67624.TRNA-ASP-1, 67625.TRNA-ASP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asp (anticodon: GTC)  transcript_id AT5G14495.1  
At5g14500	chr5:004676291	0.0	C/4676291-4676368,4675956-4676030,4675713-4675769,4675471-4675628,4675264-4675395,4675000-4675102,4674814-4674913,4674503-4674720	AT5G14500.1  CDS  gene_syn T15N1.5  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function isomerase activity|GO:0016853||IEA  go_function carbohydrate binding|GO:0030246||IEA  go_component cellular_component|GO:0005575||ND  go_process galactose metabolic process|GO:0006012||ISS  go_function aldose 1-epimerase activity|GO:0004034||ISS  product aldose 1-epimerase family protein  note aldose 1-epimerase family protein; FUNCTIONS IN: carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity; INVOLVED IN: galactose metabolic process, carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Aldose 1-epimerase (InterPro:IPR008183), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718); BEST Arabidopsis thaliana protein match is: aldose 1-epimerase family protein (TAIR:AT3G01590.2); Has 1231 Blast hits to 1228 proteins in 482 species: Archae - 0; Bacteria - 792; Metazoa - 38; Fungi - 86; Plants - 139; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).  protein_id AT5G14500.1p  transcript_id AT5G14500.1  protein_id AT5G14500.1p  transcript_id AT5G14500.1  
At5g14510	chr5:004678980	0.0	C/4678980-4679194,4678125-4678893	AT5G14510.1  CDS  gene_syn T15N1.2  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product armadillo/beta-catenin repeat family protein  note armadillo/beta-catenin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein (TAIR:AT4G12710.1); Has 732 Blast hits to 629 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 134; Plants - 527; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT5G14510.1p  transcript_id AT5G14510.1  protein_id AT5G14510.1p  transcript_id AT5G14510.1  
At5g14520	chr5:004684307	0.0	C/4684307-4684330,4684066-4684151,4683582-4683830,4683357-4683482,4683168-4683252,4682969-4683079,4682781-4682874,4682380-4682645,4681818-4681925,4681616-4681737,4681299-4681518,4681010-4681207,4680789-4680872	AT5G14520.1  CDS  gene_syn T15N1.10, T15N1_10  go_component intracellular|GO:0005622||IEA  go_component nucleolus|GO:0005730||IEA  go_process cell proliferation|GO:0008283||IEA  go_component intracellular|GO:0005622||ISS  go_function transcription coactivator activity|GO:0003713||ISS  product pescadillo-related  note pescadillo-related; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: cell proliferation; LOCATED IN: nucleolus, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pescadillo, N-terminal (InterPro:IPR010613), BRCT (InterPro:IPR001357); Has 329 Blast hits to 325 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 136; Fungi - 88; Plants - 21; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT5G14520.1p  transcript_id AT5G14520.1  protein_id AT5G14520.1p  transcript_id AT5G14520.1  
At5g14530	chr5:004686797	0.0	C/4686797-4686865,4686584-4686684,4686307-4686416,4686152-4686218,4685971-4686070,4685607-4685723,4685382-4685519,4685218-4685299,4685080-4685129,4684782-4684940	AT5G14530.1  CDS  gene_syn T15N1.20, T15N1_20  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G66240.2); Has 16756 Blast hits to 10158 proteins in 404 species: Archae - 58; Bacteria - 3626; Metazoa - 6879; Fungi - 2862; Plants - 1119; Viruses - 0; Other Eukaryotes - 2212 (source: NCBI BLink).  protein_id AT5G14530.1p  transcript_id AT5G14530.1  protein_id AT5G14530.1p  transcript_id AT5G14530.1  
At5g14540	chr5:004689325	0.0	C/4689325-4689624,4688669-4688947,4687333-4688397	AT5G14540.1  CDS  gene_syn T15N1.30, T15N1_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product proline-rich family protein  note proline-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), UBA-like (InterPro:IPR009060), Protein of unknown function DUF1421 (InterPro:IPR010820); BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G01560.1); Has 96814 Blast hits to 50121 proteins in 1728 species: Archae - 134; Bacteria - 11167; Metazoa - 41774; Fungi - 16096; Plants - 12223; Viruses - 2174; Other Eukaryotes - 13246 (source: NCBI BLink).  protein_id AT5G14540.1p  transcript_id AT5G14540.1  protein_id AT5G14540.1p  transcript_id AT5G14540.1  
At5g14545	chr5:004691022	0.0	W/4691022-4691137	AT5G14545.1  miRNA  gene_syn MICRORNA398B, MIR398B  gene MIR398B  function Encodes a microRNA that targets both CSD and CytC oxidase family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UGUGUUCUCAGGUCACCCCUG. Down-regulated by biotic and abiotic stress.  go_process response to salt stress|GO:0009651|19148671|IEP  go_process response to ozone|GO:0010193|19148671|IEP  go_process defense response to bacterium|GO:0042742|19148671|IEP  product MIR398B (MICRORNA398B); miRNA  transcript_id AT5G14545.1  
At5g14550	chr5:004693472	0.0	C/4693472-4693732,4693262-4693375,4693080-4693180,4692917-4692988,4692760-4692841,4692549-4692629,4691989-4692054,4691633-4691896	AT5G14550.2  CDS  gene_syn T15N1.40, T15N1_40  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF266, plant (InterPro:IPR004949); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11940.1); Has 333 Blast hits to 333 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 307; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT5G14550.2p  transcript_id AT5G14550.2  protein_id AT5G14550.2p  transcript_id AT5G14550.2  
At5g14550	chr5:004693472	0.0	C/4693472-4693732,4693262-4693375,4693080-4693180,4692917-4692988,4692760-4692841,4692549-4692629,4692240-4692278,4691989-4692054,4691747-4691896,4691464-4691592,4691321-4691359	AT5G14550.1  CDS  gene_syn T15N1.40, T15N1_40  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF266, plant (InterPro:IPR004949); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62305.1); Has 333 Blast hits to 333 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 307; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT5G14550.1p  transcript_id AT5G14550.1  protein_id AT5G14550.1p  transcript_id AT5G14550.1  
At5g14560	chr5:004693964	0.0	W/4693964-4694086	AT5G14560.1  CDS  gene_syn T15N1.50, T15N1_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G14560.1p  transcript_id AT5G14560.1  protein_id AT5G14560.1p  transcript_id AT5G14560.1  
At5g14565	chr5:004694626	0.0	W/4694626-4697013	AT5G14565.1  miRNA  gene_syn MICRORNA398C, MIR398C  gene MIR398C  function Encodes a microRNA that targets both CSD and CytC oxidase family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGUGUUCUCAGGUCACCCCUG. Down-regulated by biotic and abiotic stress.  go_process response to salt stress|GO:0009651|19148671|IEP  go_process response to ozone|GO:0010193|19148671|IEP  go_process defense response to bacterium|GO:0042742|19148671|IEP  product MIR398C (MICRORNA398C); miRNA  transcript_id AT5G14565.1  
At5g14570	chr5:004695707	0.0	C/4695707-4696890,4695331-4695628	AT5G14570.1  CDS  gene_syn ATNRT2.7, Arabidopsis thaliana high affinity nitrate transporter 2.7, T15N1.60, T15N1_60  gene ATNRT2.7  function Encodes ATNRT2.7, a nitrate transporter that controls nitrate content in seeds. Expression is detected in reproductive organs and peaks in seeds. Localized to the vacuolar membrane.  go_component plant-type vacuole membrane|GO:0009705|17540716|IDA  go_process nitrate transport|GO:0015706|17540716|IDA  go_function nitrate transmembrane transporter activity|GO:0015112|17540716|IDA  go_function nitrate transmembrane transporter activity|GO:0015112||ISS  product ATNRT2.7 (Arabidopsis thaliana high affinity nitrate transporter 2.7); nitrate transmembrane transporter  note Arabidopsis thaliana high affinity nitrate transporter 2.7 (ATNRT2.7); FUNCTIONS IN: nitrate transmembrane transporter activity; INVOLVED IN: nitrate transport; LOCATED IN: plant-type vacuole membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ATNRT2.5 (nitrate transporter2.5); nitrate transmembrane transporter (TAIR:AT1G12940.1); Has 4435 Blast hits to 4404 proteins in 908 species: Archae - 60; Bacteria - 3733; Metazoa - 41; Fungi - 196; Plants - 163; Viruses - 0; Other Eukaryotes - 242 (source: NCBI BLink).  protein_id AT5G14570.1p  transcript_id AT5G14570.1  protein_id AT5G14570.1p  transcript_id AT5G14570.1  
At5g14580	chr5:004702693	0.0	C/4702693-4703013,4702300-4702455,4702039-4702209,4701819-4701944,4701581-4701742,4701390-4701509,4700869-4701006,4700409-4700571,4700040-4700165,4699801-4699931,4699405-4699624,4699238-4699321,4698951-4699030,4698734-4698877,4697838-4698560,4697612-4697722	AT5G14580.1  CDS  gene_syn T15N1.70, T15N1_70  go_process RNA processing|GO:0006396||IEA  go_process mRNA catabolic process|GO:0006402||IEA  go_function 3 -5 -exoribonuclease activity|GO:0000175||IEA  go_function RNA binding|GO:0003723||IEA  go_function polyribonucleotide nucleotidyltransferase activity|GO:0004654||IEA  go_function 3 -5 -exoribonuclease activity|GO:0000175||ISS  go_function nucleic acid binding|GO:0003676||ISS  go_function RNA binding|GO:0003723||ISS  product polyribonucleotide nucleotidyltransferase, putative  note polyribonucleotide nucleotidyltransferase, putative; FUNCTIONS IN: polyribonucleotide nucleotidyltransferase activity, 3 -5 -exoribonuclease activity, RNA binding, nucleic acid binding; INVOLVED IN: mRNA catabolic process, RNA processing; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), K Homology, type 1, subgroup (InterPro:IPR018111), Exoribonuclease, phosphorolytic domain 2 (InterPro:IPR015847), S1, RNA binding (InterPro:IPR003029), Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type (InterPro:IPR015848), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), K Homology (InterPro:IPR004087), Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Polyribonucleotide nucleotidyltransferase (InterPro:IPR012162); BEST Arabidopsis thaliana protein match is: RIF10 (resistant to inhibition with FSM 10); 3 -5 -exoribonuclease/ RNA binding / nucleic acid binding / polyribonucleotide nucleotidyltransferase (TAIR:AT3G03710.1); Has 19856 Blast hits to 18048 proteins in 1642 species: Archae - 206; Bacteria - 10090; Metazoa - 440; Fungi - 100; Plants - 266; Viruses - 0; Other Eukaryotes - 8754 (source: NCBI BLink).  protein_id AT5G14580.1p  transcript_id AT5G14580.1  protein_id AT5G14580.1p  transcript_id AT5G14580.1  
At5g14590	chr5:004706369	0.0	C/4706369-4706627,4706171-4706214,4705974-4706083,4705820-4705857,4705650-4705727,4705445-4705498,4705259-4705360,4705078-4705166,4704894-4704997,4704739-4704807,4704537-4704652,4704402-4704436,4704182-4704324,4703907-4704029,4703533-4703626	AT5G14590.1  CDS  gene_syn T15N1.80, T15N1_80  go_component chloroplast|GO:0009507|18431481|IDA  go_process isocitrate metabolic process|GO:0006102||IEA  go_process metabolic process|GO:0008152||IEA  go_function isocitrate dehydrogenase (NADP+) activity|GO:0004450||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process metabolic process|GO:0008152||ISS  go_function isocitrate dehydrogenase (NADP+) activity|GO:0004450||ISS  product isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative  note isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative; FUNCTIONS IN: isocitrate dehydrogenase (NADP+) activity, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; INVOLVED IN: isocitrate metabolic process, metabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804), Isocitrate dehydrogenase NADP-dependent, eukaryotic (InterPro:IPR004790); BEST Arabidopsis thaliana protein match is: isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative (TAIR:AT1G65930.1); Has 4142 Blast hits to 4125 proteins in 584 species: Archae - 19; Bacteria - 563; Metazoa - 433; Fungi - 160; Plants - 265; Viruses - 0; Other Eukaryotes - 2702 (source: NCBI BLink).  protein_id AT5G14590.1p  transcript_id AT5G14590.1  protein_id AT5G14590.1p  transcript_id AT5G14590.1  
At5g14600	chr5:004707518	0.0	W/4707518-4707966,4708056-4708300,4708760-4709022	AT5G14600.1  CDS  gene_syn T15N1.90, T15N1_90  go_process tRNA methylation|GO:0030488||IEA  go_function tRNA (adenine-N1-)-methyltransferase activity|GO:0016429||IEA  go_component cellular_component|GO:0005575||ND  product tRNA (adenine-N1-)-methyltransferase  note tRNA (adenine-N1-)-methyltransferase; FUNCTIONS IN: tRNA (adenine-N1-)-methyltransferase activity; INVOLVED IN: tRNA methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: tRNA methyltransferase complex GCD14 subunit (InterPro:IPR014816); Has 1145 Blast hits to 1142 proteins in 382 species: Archae - 132; Bacteria - 313; Metazoa - 135; Fungi - 115; Plants - 30; Viruses - 0; Other Eukaryotes - 420 (source: NCBI BLink).  protein_id AT5G14600.1p  transcript_id AT5G14600.1  protein_id AT5G14600.1p  transcript_id AT5G14600.1  
At5g14602	chr5:004709436	0.0	W/4709436-4709678	AT5G14602.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18150.1); Has 25 Blast hits to 25 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G14602.1p  transcript_id AT5G14602.1  protein_id AT5G14602.1p  transcript_id AT5G14602.1  
At5g14610	chr5:004711271	0.0	W/4711271-4711570,4711714-4711869,4712123-4712191,4712582-4712725,4712807-4712866,4712949-4713218,4713306-4713656,4713758-4714035,4714117-4714506,4714593-4714713	AT5G14610.1  CDS  gene_syn T15N1.100, T15N1_100  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_component cellular_component|GO:0005575||ND  go_function ATP binding|GO:0005524||ISS  go_function ATP-dependent helicase activity|GO:0008026||ISS  product ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding / protein binding  note ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding / protein binding; FUNCTIONS IN: protein binding, helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), WW/Rsp5/WWP (InterPro:IPR001202), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase (TAIR:AT3G01540.4); Has 52477 Blast hits to 39251 proteins in 1971 species: Archae - 612; Bacteria - 22224; Metazoa - 10881; Fungi - 4675; Plants - 4189; Viruses - 260; Other Eukaryotes - 9636 (source: NCBI BLink).  protein_id AT5G14610.1p  transcript_id AT5G14610.1  protein_id AT5G14610.1p  transcript_id AT5G14610.1  
At5g14620	chr5:004718456	0.0	C/4718456-4718578,4718245-4718377,4718120-4718169,4717923-4718022,4717798-4717844,4717618-4717722,4717394-4717490,4716761-4716858,4715979-4716674,4715429-4715860	AT5G14620.1  CDS  gene_syn AT5G14630, DMT7, DOMAINS REARRANGED METHYLTRANSFERASE 2, DRM2, NA METHYLTRANSFERASE, T15N1.110, T15N1_110  gene DRM2  function A putative DNA methyltransferase with rearranged catalytic domains; similar to mammalian DNMT3 methyltransferases; contains UBA domains. The 3 -end proximal part of the gene coding region is highly methylated at both adenine and cytosine residues.  go_component nucleus|GO:0005634|10781108|ISS  go_process DNA methylation|GO:0006306|12151602|IMP  go_process DNA methylation|GO:0006306|16839879|IMP  go_process histone H3-K9 methylation|GO:0051567|17239600|IGI  go_function N-methyltransferase activity|GO:0008170||ISS  product DRM2 (DOMAINS REARRANGED METHYLTRANSFERASE 2); N-methyltransferase  note DOMAINS REARRANGED METHYLTRANSFERASE 2 (DRM2); FUNCTIONS IN: N-methyltransferase activity; INVOLVED IN: histone H3-K9 methylation, DNA methylation; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), C-5 cytosine-specific DNA methylase (InterPro:IPR001525); BEST Arabidopsis thaliana protein match is: DRM1 (domains rearranged methylase 1); DNA (cytosine-5-)-methyltransferase (TAIR:AT5G15380.1); Has 563 Blast hits to 470 proteins in 88 species: Archae - 0; Bacteria - 89; Metazoa - 258; Fungi - 0; Plants - 93; Viruses - 13; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT5G14620.1p  transcript_id AT5G14620.1  protein_id AT5G14620.1p  transcript_id AT5G14620.1  
At5g14640	chr5:004721656	0.0	C/4721656-4721772,4721457-4721549,4721218-4721277,4720850-4721122,4720672-4720746,4720534-4720590,4720275-4720415,4720111-4720161,4719873-4719968,4719706-4719789,4719522-4719624,4719350-4719432	AT5G14640.1  CDS  gene_syn ATSK13, SHAGGY-LIKE KINASE 13, SK13, T15N1.130, T15N1_130  gene SK13  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_process hyperosmotic response|GO:0006972|12376626|IEP  go_process response to salt stress|GO:0009651|12376626|IEP  go_function protein kinase activity|GO:0004672||ISS  product SK13 (SHAGGY-LIKE KINASE 13); ATP binding / protein kinase/ protein serine/threonine kinase  note SHAGGY-LIKE KINASE 13 (SK13); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: response to salt stress, hyperosmotic response; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATSK11; protein kinase/ protein serine/threonine kinase (TAIR:AT5G26751.1); Has 77993 Blast hits to 77020 proteins in 2468 species: Archae - 36; Bacteria - 6200; Metazoa - 32731; Fungi - 7832; Plants - 15487; Viruses - 357; Other Eukaryotes - 15350 (source: NCBI BLink).  protein_id AT5G14640.1p  transcript_id AT5G14640.1  protein_id AT5G14640.1p  transcript_id AT5G14640.1  
At5g14650	chr5:004724509	0.0	W/4724509-4724712,4724789-4724920,4725003-4725149,4725237-4725269,4725353-4725560,4725639-4725829,4725936-4726328	AT5G14650.1  CDS  gene_syn T15N1.140, T15N1_140  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product polygalacturonase, putative / pectinase, putative  note polygalacturonase, putative / pectinase, putative; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: polygalacturonase, putative / pectinase, putative (TAIR:AT1G60590.1); Has 2723 Blast hits to 2712 proteins in 393 species: Archae - 2; Bacteria - 574; Metazoa - 8; Fungi - 1164; Plants - 893; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT5G14650.1p  transcript_id AT5G14650.1  protein_id AT5G14650.1p  transcript_id AT5G14650.1  
At5g14660	chr5:004728458	0.0	C/4728458-4728671,4728235-4728373,4727964-4728156,4727759-4727869,4727425-4727487,4727129-4727230	AT5G14660.1  CDS  gene_syn DEF2, PDF1B, PEPTIDE DEFORMYLASE 1B  gene PDF1B  function encodes a peptide deformylase-like protein  go_component chloroplast|GO:0009507|18431481|IDA  go_process translation|GO:0006412||IEA  go_function iron ion binding|GO:0005506||IEA  go_function peptide deformylase activity|GO:0042586||IEA  go_process translation|GO:0006412||ISS  go_function peptide deformylase activity|GO:0042586||ISS  product PDF1B (PEPTIDE DEFORMYLASE 1B); iron ion binding / peptide deformylase  note PEPTIDE DEFORMYLASE 1B (PDF1B); FUNCTIONS IN: peptide deformylase activity, iron ion binding; INVOLVED IN: translation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Formylmethionine deformylase (InterPro:IPR000181); BEST Arabidopsis thaliana protein match is: PDF1A (PEPTIDE DEFORMYLASE 1A); peptide deformylase (TAIR:AT1G15390.1); Has 7299 Blast hits to 7298 proteins in 1462 species: Archae - 4; Bacteria - 4215; Metazoa - 96; Fungi - 0; Plants - 63; Viruses - 2; Other Eukaryotes - 2919 (source: NCBI BLink).  protein_id AT5G14660.1p  transcript_id AT5G14660.1  protein_id AT5G14660.1p  transcript_id AT5G14660.1  
At5g14660	chr5:004728458	0.0	C/4728458-4728671,4728235-4728373,4727964-4728156,4727759-4727869,4727425-4727487,4727129-4727230	AT5G14660.2  CDS  gene_syn DEF2, PDF1B, PEPTIDE DEFORMYLASE 1B  gene PDF1B  function encodes a peptide deformylase-like protein  go_component chloroplast|GO:0009507|18431481|IDA  go_process translation|GO:0006412||IEA  go_function iron ion binding|GO:0005506||IEA  go_function peptide deformylase activity|GO:0042586||IEA  go_process translation|GO:0006412||ISS  go_function peptide deformylase activity|GO:0042586||ISS  product PDF1B (PEPTIDE DEFORMYLASE 1B); iron ion binding / peptide deformylase  note PEPTIDE DEFORMYLASE 1B (PDF1B); FUNCTIONS IN: peptide deformylase activity, iron ion binding; INVOLVED IN: translation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Formylmethionine deformylase (InterPro:IPR000181); BEST Arabidopsis thaliana protein match is: PDF1A (PEPTIDE DEFORMYLASE 1A); peptide deformylase (TAIR:AT1G15390.1); Has 7299 Blast hits to 7298 proteins in 1462 species: Archae - 4; Bacteria - 4215; Metazoa - 96; Fungi - 0; Plants - 63; Viruses - 2; Other Eukaryotes - 2919 (source: NCBI BLink).  protein_id AT5G14660.2p  transcript_id AT5G14660.2  protein_id AT5G14660.2p  transcript_id AT5G14660.2  
At5g14670	chr5:004729319	0.0	W/4729319-4729466,4729639-4729709,4729940-4730059,4730142-4730260,4730387-4730495	AT5G14670.1  CDS  gene_syn ADP-ribosylation factor A1B, ATARFA1B, T15N1.160, T15N1_160  gene ATARFA1B  function A member of ARF GTPase family. Arabidopsis has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor DcARF1 (GI:965483) (Daucus carota), other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.  go_component intracellular|GO:0005622||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function protein binding|GO:0005515|15723828|TAS  go_function GTP binding|GO:0005525|15723828|ISS  go_function GTP binding|GO:0005525|15723828|TAS  go_function phospholipase activator activity|GO:0016004|15723828|TAS  product ATARFA1B (ADP-ribosylation factor A1B); GTP binding / phospholipase activator/ protein binding  note ADP-ribosylation factor A1B (ATARFA1B); FUNCTIONS IN: protein binding, phospholipase activator activity, GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: intracellular; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F); GTP binding / copper ion binding / phospholipase activator/ protein binding (TAIR:AT1G10630.1); Has 12149 Blast hits to 12132 proteins in 424 species: Archae - 12; Bacteria - 49; Metazoa - 6649; Fungi - 1351; Plants - 1257; Viruses - 3; Other Eukaryotes - 2828 (source: NCBI BLink).  protein_id AT5G14670.1p  transcript_id AT5G14670.1  protein_id AT5G14670.1p  transcript_id AT5G14670.1  
At5g14680	chr5:004732848	0.0	C/4732848-4733025,4732262-4732383,4732032-4732150,4731620-4731728	AT5G14680.1  CDS  gene_syn T15N1.170, T15N1_170  go_process response to stress|GO:0006950||IEA  go_component cellular_component|GO:0005575||ND  go_process response to stress|GO:0006950||ISS  go_function molecular_function|GO:0003674||ND  product universal stress protein (USP) family protein  note universal stress protein (USP) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: universal stress protein (USP) family protein (TAIR:AT3G01520.1); Has 1288 Blast hits to 1284 proteins in 330 species: Archae - 88; Bacteria - 759; Metazoa - 35; Fungi - 21; Plants - 361; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT5G14680.1p  transcript_id AT5G14680.1  protein_id AT5G14680.1p  transcript_id AT5G14680.1  
At5g14690	chr5:004733862	0.0	C/4733862-4734515	AT5G14690.1  CDS  gene_syn T9L3.3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf apex, hypocotyl, flower, root, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01516.1); Has 50 Blast hits to 50 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 47; Viruses - 2; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G14690.1p  transcript_id AT5G14690.1  protein_id AT5G14690.1p  transcript_id AT5G14690.1  
At5g14700	chr5:004743069	0.0	C/4743069-4743327,4742642-4742823,4741275-4741472,4741014-4741167,4740502-4740815	AT5G14700.1  CDS  gene_syn T9L3.2  go_process steroid biosynthetic process|GO:0006694||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function 3-beta-hydroxy-delta5-steroid dehydrogenase activity|GO:0003854||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process lignin biosynthetic process|GO:0009809||ISS  go_function cinnamoyl-CoA reductase activity|GO:0016621||ISS  product cinnamoyl-CoA reductase-related  note cinnamoyl-CoA reductase-related; FUNCTIONS IN: binding, 3-beta-hydroxy-delta5-steroid dehydrogenase activity, cinnamoyl-CoA reductase activity, catalytic activity; INVOLVED IN: lignin biosynthetic process, steroid biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 3-beta hydroxysteroid dehydrogenase/isomerase (InterPro:IPR002225), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamoyl-CoA reductase-related (TAIR:AT4G30470.1); Has 2758 Blast hits to 2752 proteins in 501 species: Archae - 2; Bacteria - 460; Metazoa - 60; Fungi - 295; Plants - 1187; Viruses - 40; Other Eukaryotes - 714 (source: NCBI BLink).  protein_id AT5G14700.1p  transcript_id AT5G14700.1  protein_id AT5G14700.1p  transcript_id AT5G14700.1  
At5g14710	chr5:004746465	0.0	W/4746465-4746524,4746726-4746773,4746863-4746909,4747248-4747314,4747399-4747442,4747581-4747638,4747726-4747776	AT5G14710.1  CDS  gene_syn T9L3.10, T9L3_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome assembly chaperone 3 (InterPro:IPR018788); Has 85 Blast hits to 85 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 2; Plants - 27; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G14710.1p  transcript_id AT5G14710.1  protein_id AT5G14710.1p  transcript_id AT5G14710.1  
At5g14720	chr5:004752475	0.0	C/4752475-4752642,4751865-4752119,4751597-4751721,4751460-4751504,4751275-4751356,4751112-4751180,4750859-4751029,4750708-4750767,4750479-4750547,4750286-4750411,4750093-4750166,4749718-4749975,4749516-4749589,4749360-4749436,4749069-4749194,4748962-4749004,4748800-4748846,4748618-4748679,4748416-4748467,4748212-4748253	AT5G14720.1  CDS  gene_syn T9L3.20, T9L3_20  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT1G79640.1); Has 89319 Blast hits to 87983 proteins in 2109 species: Archae - 58; Bacteria - 7891; Metazoa - 38520; Fungi - 7962; Plants - 17967; Viruses - 455; Other Eukaryotes - 16466 (source: NCBI BLink).  protein_id AT5G14720.1p  transcript_id AT5G14720.1  protein_id AT5G14720.1p  transcript_id AT5G14720.1  
At5g14730	chr5:004756282	0.0	W/4756282-4757022	AT5G14730.1  CDS  gene_syn T9L3.30, T9L3_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01513.1); Has 60 Blast hits to 58 proteins in 8 species: Archae - 0; Bacteria - 9; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G14730.1p  transcript_id AT5G14730.1  protein_id AT5G14730.1p  transcript_id AT5G14730.1  
At5g14740	chr5:004758257	0.0	W/4758257-4758343,4759096-4759213,4760525-4760588,4760724-4760873,4760989-4761037,4761163-4761279,4761427-4761480,4761738-4761823,4761961-4762066,4762218-4762382	AT5G14740.1  CDS  gene_syn BETA CA2, BETA CARBONIC ANHYDRASE 2, CA18, CA2, CARBONIC ANHYDRASE 18, CARBONIC ANHYDRASE 2, T9L3.40, T9L3_40  gene CA2  function Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm. Expression of its mRNA is seen in etiolated seedlings and points to a possible nonphotosynthetic role for this isoform.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_function carbonate dehydratase activity|GO:0004089||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cytoplasm|GO:0005737|7520589|IDA  go_component cytosol|GO:0005829|17407539|IDA  go_process carbon utilization|GO:0015976||ISS  go_function carbonate dehydratase activity|GO:0004089||ISS  go_function zinc ion binding|GO:0008270||ISS  product CA2 (CARBONIC ANHYDRASE 2); carbonate dehydratase/ zinc ion binding  note CARBONIC ANHYDRASE 2 (CA2); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: defense response to bacterium, carbon utilization; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: CA1 (CARBONIC ANHYDRASE 1); carbonate dehydratase/ zinc ion binding (TAIR:AT3G01500.3); Has 3251 Blast hits to 3237 proteins in 952 species: Archae - 20; Bacteria - 2320; Metazoa - 48; Fungi - 143; Plants - 233; Viruses - 0; Other Eukaryotes - 487 (source: NCBI BLink).  protein_id AT5G14740.1p  transcript_id AT5G14740.1  protein_id AT5G14740.1p  transcript_id AT5G14740.1  
At5g14740	chr5:004758257	0.0	W/4758257-4758343,4759096-4759213,4760525-4760588,4760724-4760873,4760989-4761037,4761163-4761279,4761427-4761480,4761738-4761823,4761961-4762066,4762221-4762382	AT5G14740.4  CDS  gene_syn BETA CA2, BETA CARBONIC ANHYDRASE 2, CA18, CA2, CARBONIC ANHYDRASE 18, CARBONIC ANHYDRASE 2, T9L3.40, T9L3_40  gene CA2  function Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm. Expression of its mRNA is seen in etiolated seedlings and points to a possible nonphotosynthetic role for this isoform.  go_component chloroplast|GO:0009507|18431481|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_function carbonate dehydratase activity|GO:0004089||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cytoplasm|GO:0005737|7520589|IDA  go_component cytosol|GO:0005829|17407539|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process carbon utilization|GO:0015976||ISS  go_function carbonate dehydratase activity|GO:0004089||ISS  go_function zinc ion binding|GO:0008270||ISS  product CA2 (CARBONIC ANHYDRASE 2); carbonate dehydratase/ zinc ion binding  note CARBONIC ANHYDRASE 2 (CA2); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: defense response to bacterium, carbon utilization; LOCATED IN: cytosol, chloroplast thylakoid membrane, apoplast, chloroplast, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: CA1 (CARBONIC ANHYDRASE 1); carbonate dehydratase/ zinc ion binding (TAIR:AT3G01500.3); Has 3246 Blast hits to 3232 proteins in 951 species: Archae - 20; Bacteria - 2319; Metazoa - 48; Fungi - 143; Plants - 233; Viruses - 0; Other Eukaryotes - 483 (source: NCBI BLink).  protein_id AT5G14740.4p  transcript_id AT5G14740.4  protein_id AT5G14740.4p  transcript_id AT5G14740.4  
At5g14740	chr5:004758257	0.0	W/4758257-4758343,4759096-4759213,4760525-4760588,4760724-4760873,4760989-4761037,4761163-4761279,4761427-4761480,4761738-4761823,4761961-4762070,4762218-4762315	AT5G14740.5  CDS  gene_syn BETA CA2, BETA CARBONIC ANHYDRASE 2, CA18, CA2, CARBONIC ANHYDRASE 18, CARBONIC ANHYDRASE 2, T9L3.40, T9L3_40  gene CA2  function Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm. Expression of its mRNA is seen in etiolated seedlings and points to a possible nonphotosynthetic role for this isoform.  go_component chloroplast|GO:0009507|18431481|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_function carbonate dehydratase activity|GO:0004089||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cytoplasm|GO:0005737|7520589|IDA  go_component cytosol|GO:0005829|17407539|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process carbon utilization|GO:0015976||ISS  go_function carbonate dehydratase activity|GO:0004089||ISS  go_function zinc ion binding|GO:0008270||ISS  product CA2 (CARBONIC ANHYDRASE 2); carbonate dehydratase/ zinc ion binding  note CARBONIC ANHYDRASE 2 (CA2); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: defense response to bacterium, carbon utilization; LOCATED IN: cytosol, chloroplast thylakoid membrane, apoplast, chloroplast, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: CA1 (CARBONIC ANHYDRASE 1); carbonate dehydratase/ zinc ion binding (TAIR:AT3G01500.3); Has 3211 Blast hits to 3199 proteins in 948 species: Archae - 20; Bacteria - 2307; Metazoa - 48; Fungi - 142; Plants - 228; Viruses - 0; Other Eukaryotes - 466 (source: NCBI BLink).  protein_id AT5G14740.5p  transcript_id AT5G14740.5  protein_id AT5G14740.5p  transcript_id AT5G14740.5  
At5g14740	chr5:004758257	0.0	W/4758257-4758343,4759096-4759213,4760525-4760588,4760724-4760873,4760989-4761037,4761163-4761279,4761427-4761480,4761738-4761823,4761961-4762070,4762225-4762382	AT5G14740.3  CDS  gene_syn BETA CA2, BETA CARBONIC ANHYDRASE 2, CA18, CA2, CARBONIC ANHYDRASE 18, CARBONIC ANHYDRASE 2, T9L3.40, T9L3_40  gene CA2  function Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm. Expression of its mRNA is seen in etiolated seedlings and points to a possible nonphotosynthetic role for this isoform.  go_component chloroplast|GO:0009507|18431481|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_function carbonate dehydratase activity|GO:0004089||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cytoplasm|GO:0005737|7520589|IDA  go_component cytosol|GO:0005829|17407539|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process carbon utilization|GO:0015976||ISS  go_function carbonate dehydratase activity|GO:0004089||ISS  go_function zinc ion binding|GO:0008270||ISS  product CA2 (CARBONIC ANHYDRASE 2); carbonate dehydratase/ zinc ion binding  note CARBONIC ANHYDRASE 2 (CA2); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: defense response to bacterium, carbon utilization; LOCATED IN: cytosol, chloroplast thylakoid membrane, apoplast, chloroplast, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: CA1 (CARBONIC ANHYDRASE 1); carbonate dehydratase/ zinc ion binding (TAIR:AT3G01500.3); Has 3239 Blast hits to 3225 proteins in 951 species: Archae - 20; Bacteria - 2317; Metazoa - 48; Fungi - 143; Plants - 233; Viruses - 0; Other Eukaryotes - 478 (source: NCBI BLink).  protein_id AT5G14740.3p  transcript_id AT5G14740.3  protein_id AT5G14740.3p  transcript_id AT5G14740.3  
At5g14740	chr5:004760536	0.0	W/4760536-4760588,4760724-4760873,4760989-4761037,4761163-4761279,4761427-4761480,4761738-4761823,4761961-4762066,4762218-4762382	AT5G14740.2  CDS  gene_syn BETA CA2, BETA CARBONIC ANHYDRASE 2, CA18, CA2, CARBONIC ANHYDRASE 18, CARBONIC ANHYDRASE 2, T9L3.40, T9L3_40  gene CA2  function Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm. Expression of its mRNA is seen in etiolated seedlings and points to a possible nonphotosynthetic role for this isoform.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_function carbonate dehydratase activity|GO:0004089||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cytoplasm|GO:0005737|7520589|IDA  go_component cytosol|GO:0005829|17407539|IDA  go_process carbon utilization|GO:0015976||ISS  go_function carbonate dehydratase activity|GO:0004089||ISS  go_function zinc ion binding|GO:0008270||ISS  product CA2 (CARBONIC ANHYDRASE 2); carbonate dehydratase/ zinc ion binding  note CARBONIC ANHYDRASE 2 (CA2); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: defense response to bacterium, carbon utilization; LOCATED IN: cytosol, chloroplast thylakoid membrane, apoplast, chloroplast, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: CA1 (CARBONIC ANHYDRASE 1); carbonate dehydratase/ zinc ion binding (TAIR:AT3G01500.3); Has 3251 Blast hits to 3237 proteins in 952 species: Archae - 20; Bacteria - 2320; Metazoa - 48; Fungi - 143; Plants - 233; Viruses - 0; Other Eukaryotes - 487 (source: NCBI BLink).  protein_id AT5G14740.2p  transcript_id AT5G14740.2  protein_id AT5G14740.2p  transcript_id AT5G14740.2  
At5g14750	chr5:004764594	0.0	C/4764594-4764738,4764200-4764329,4763656-4763992	AT5G14750.1  CDS  gene_syn ATMYB66, MYB DOMAIN PROTEIN 66, T9L3.50, T9L3_50, WER, WER1, WEREWOLF, WEREWOLF 1  gene ATMYB66  function Encodes a MyB-related protein containing R2 and R3 repeats, involved in root and hypocotyl epidermal cell fate determination. Loss of function mutations make extra root hairs. Nuclear localized protein is a positive regulator for expression of CAPRICE (CPC).  go_component nucleus|GO:0005634|16207757|IDA  go_component nucleus|GO:0005634|16581911|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process cell fate commitment|GO:0045165|10589676|IMP  go_function DNA binding|GO:0003677|16207757|IPI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein binding|GO:0005515|10589676|IPI  go_function transcription regulator activity|GO:0030528|10589676|IMP  product ATMYB66 (MYB DOMAIN PROTEIN 66); DNA binding / protein binding / transcription factor/ transcription regulator  note MYB DOMAIN PROTEIN 66 (ATMYB66); FUNCTIONS IN: protein binding, transcription factor activity, transcription regulator activity, DNA binding; INVOLVED IN: cell fate commitment, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB23 (MYB DOMAIN PROTEIN 23); DNA binding / protein binding / transcription factor (TAIR:AT5G40330.1); Has 6454 Blast hits to 5911 proteins in 370 species: Archae - 0; Bacteria - 0; Metazoa - 640; Fungi - 335; Plants - 3797; Viruses - 3; Other Eukaryotes - 1679 (source: NCBI BLink).  protein_id AT5G14750.1p  transcript_id AT5G14750.1  protein_id AT5G14750.1p  transcript_id AT5G14750.1  
At5g14760	chr5:004769133	0.0	W/4769133-4769260,4769440-4769791,4769921-4770163,4770246-4770302,4770387-4770467,4770843-4770904,4770980-4772012	AT5G14760.1  CDS  gene_syn AO, L-ASPARTATE OXIDASE, T9L3.60, T9L3_60  gene AO  function At5g14760 encodes for L-aspartate oxidase involved in the early steps of NAD biosynthesis. In contrary to the EC 1.4.3.16 (l-aspartate oxidase - deaminating) the enzyme catalyzes the reaction L-aspartate + O2 = iminoaspartate (alpha-iminosuccinate) + H2O2  go_function L-aspartate oxidase activity|GO:0008734||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component chloroplast|GO:0009507|16698895|IDA  go_process NAD biosynthetic process|GO:0009435|16698895|IGI  go_process NAD biosynthetic process|GO:0009435|16698895|IMP  go_process NAD biosynthetic process|GO:0009435||ISS  go_function L-aspartate oxidase activity|GO:0008734||ISS  product AO (L-ASPARTATE OXIDASE); L-aspartate oxidase/ electron carrier/ oxidoreductase  note L-ASPARTATE OXIDASE (AO); FUNCTIONS IN: electron carrier activity, oxidoreductase activity, L-aspartate oxidase activity; INVOLVED IN: NAD biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal (InterPro:IPR015939), Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal (InterPro:IPR003953), Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal (InterPro:IPR004112), L-aspartate oxidase (InterPro:IPR005288); BEST Arabidopsis thaliana protein match is: SDH1-1; ATP binding / succinate dehydrogenase (TAIR:AT5G66760.1); Has 11400 Blast hits to 11361 proteins in 1441 species: Archae - 147; Bacteria - 5183; Metazoa - 234; Fungi - 243; Plants - 60; Viruses - 0; Other Eukaryotes - 5533 (source: NCBI BLink).  protein_id AT5G14760.1p  transcript_id AT5G14760.1  protein_id AT5G14760.1p  transcript_id AT5G14760.1  
At5g14770	chr5:004772881	0.0	C/4772881-4775697	AT5G14770.1  CDS  gene_syn T9L3.70, T9L3_70  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: shoot apex, embryo; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G62910.1); Has 32267 Blast hits to 6116 proteins in 189 species: Archae - 3; Bacteria - 28; Metazoa - 1136; Fungi - 866; Plants - 28520; Viruses - 0; Other Eukaryotes - 1714 (source: NCBI BLink).  protein_id AT5G14770.1p  transcript_id AT5G14770.1  protein_id AT5G14770.1p  transcript_id AT5G14770.1  
At5g14780	chr5:004777043	0.0	W/4777043-4777129,4777759-4777933,4778061-4778601,4778691-4778928,4779077-4779190	AT5G14780.1  CDS  gene_syn FDH, FORMATE DEHYDROGENASE, T9L3.80, T9L3_80  gene FDH  function Encodes a NAD-dependent formate dehydrogenase.  go_component mitochondrion|GO:0005739|18385124|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_function cofactor binding|GO:0048037||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_component mitochondrion|GO:0005739|11074273|TAS  go_component mitochondrion|GO:0005739|14671022|IDA  go_component chloroplast|GO:0009507|11074273|IDA  go_process response to wounding|GO:0009611|11074273|IDA  product FDH (FORMATE DEHYDROGENASE); NAD or NADH binding / binding / catalytic/ cofactor binding / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor  note FORMATE DEHYDROGENASE (FDH); FUNCTIONS IN: NAD or NADH binding, binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, catalytic activity, cofactor binding; INVOLVED IN: response to cadmium ion, response to wounding; LOCATED IN: thylakoid, mitochondrion, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE); phosphoglycerate dehydrogenase (TAIR:AT1G17745.1); Has 19568 Blast hits to 19564 proteins in 1519 species: Archae - 283; Bacteria - 9468; Metazoa - 662; Fungi - 763; Plants - 309; Viruses - 5; Other Eukaryotes - 8078 (source: NCBI BLink).  protein_id AT5G14780.1p  transcript_id AT5G14780.1  protein_id AT5G14780.1p  transcript_id AT5G14780.1  
At5g14790	chr5:004784058	0.0	W/4784058-4784324,4784463-4784569,4784659-4784791,4784880-4785074,4785170-4785508	AT5G14790.1  CDS  gene_syn T9L3.90, T9L3_90  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT3G01450.1); Has 236 Blast hits to 236 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 7; Plants - 67; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT5G14790.1p  transcript_id AT5G14790.1  protein_id AT5G14790.1p  transcript_id AT5G14790.1  
At5g14800	chr5:004787418	0.0	C/4787418-4787618,4787288-4787336,4787103-4787194,4786905-4786977,4786669-4786789,4786481-4786590,4786353-4786378	AT5G14800.2  CDS  gene_syn AT-P5C1, AT-P5R, EMB2772, EMBRYO DEFECTIVE 2772, P5CR, PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE, T9L3.100, T9L3_100  gene P5CR  function Delta 1-pyrroline-5-carboxylate reductase, catalyzes the final step in proline biosynthesis from glutamate and ornithine.In situ hybridization indicated that under normal growth conditions, the highest concentration of P5CR transcripts occurs in the cortical parenchyma, phloem, vascular cambium and pith parenchyma in the vicinity of the protoxylem. Single gene in Arabidopsis.  go_component cytoplasm|GO:0005737||ISS  go_process proline biosynthetic process|GO:0006561||IDA  go_process proline biosynthetic process|GO:0006561||ISS  go_process response to heat|GO:0009408|11389757|IEP  go_process response to salt stress|GO:0009651|8022935|IEP  go_function pyrroline-5-carboxylate reductase activity|GO:0004735|8022935|IGI  go_function pyrroline-5-carboxylate reductase activity|GO:0004735|8022935|ISS  go_function pyrroline-5-carboxylate reductase activity|GO:0004735||ISS  product P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE); pyrroline-5-carboxylate reductase  note PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE (P5CR); FUNCTIONS IN: pyrroline-5-carboxylate reductase activity; INVOLVED IN: response to salt stress, response to heat, proline biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NADP oxidoreductase, coenzyme F420-dependent (InterPro:IPR004455), NAD(P)-binding (InterPro:IPR016040), Delta 1-pyrroline-5-carboxylate reductase (InterPro:IPR000304); Has 4699 Blast hits to 4698 proteins in 1312 species: Archae - 66; Bacteria - 2587; Metazoa - 336; Fungi - 147; Plants - 41; Viruses - 0; Other Eukaryotes - 1522 (source: NCBI BLink).  protein_id AT5G14800.2p  transcript_id AT5G14800.2  protein_id AT5G14800.2p  transcript_id AT5G14800.2  
At5g14800	chr5:004787418	0.0	C/4787418-4787618,4787288-4787336,4787103-4787194,4786905-4786977,4786669-4786789,4786485-4786590,4786190-4786378	AT5G14800.1  CDS  gene_syn AT-P5C1, AT-P5R, EMB2772, EMBRYO DEFECTIVE 2772, P5CR, PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE, T9L3.100, T9L3_100  gene P5CR  function Delta 1-pyrroline-5-carboxylate reductase, catalyzes the final step in proline biosynthesis from glutamate and ornithine.In situ hybridization indicated that under normal growth conditions, the highest concentration of P5CR transcripts occurs in the cortical parenchyma, phloem, vascular cambium and pith parenchyma in the vicinity of the protoxylem. Single gene in Arabidopsis.  go_component cell wall|GO:0005618|16287169|IDA  go_component cytoplasm|GO:0005737||ISS  go_process proline biosynthetic process|GO:0006561||IDA  go_process proline biosynthetic process|GO:0006561||ISS  go_process response to heat|GO:0009408|11389757|IEP  go_process response to salt stress|GO:0009651|8022935|IEP  go_function pyrroline-5-carboxylate reductase activity|GO:0004735|8022935|IGI  go_function pyrroline-5-carboxylate reductase activity|GO:0004735|8022935|ISS  go_function pyrroline-5-carboxylate reductase activity|GO:0004735||ISS  product P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE); pyrroline-5-carboxylate reductase  note PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE (P5CR); FUNCTIONS IN: pyrroline-5-carboxylate reductase activity; INVOLVED IN: response to salt stress, response to heat, proline biosynthetic process; LOCATED IN: cell wall, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NADP oxidoreductase, coenzyme F420-dependent (InterPro:IPR004455), NAD(P)-binding (InterPro:IPR016040), Delta 1-pyrroline-5-carboxylate reductase (InterPro:IPR000304); Has 5045 Blast hits to 5044 proteins in 1340 species: Archae - 71; Bacteria - 2627; Metazoa - 342; Fungi - 147; Plants - 41; Viruses - 0; Other Eukaryotes - 1817 (source: NCBI BLink).  protein_id AT5G14800.1p  transcript_id AT5G14800.1  protein_id AT5G14800.1p  transcript_id AT5G14800.1  
At5g14810	chr5:004789001	0.0	W/4789001-4791151	AT5G14810.1  mRNA_TE_gene  pseudo  gene_syn T9L3.110, T9L3_110  note Transposable element gene, retrotransposon family  
At5g14820	chr5:004792072	0.0	C/4792072-4793868	AT5G14820.1  CDS  gene_syn T9L3.120, T9L3_120  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G62540.1); Has 16921 Blast hits to 5317 proteins in 170 species: Archae - 3; Bacteria - 10; Metazoa - 410; Fungi - 319; Plants - 15451; Viruses - 0; Other Eukaryotes - 728 (source: NCBI BLink).  protein_id AT5G14820.1p  transcript_id AT5G14820.1  protein_id AT5G14820.1p  transcript_id AT5G14820.1  
At5g14830	chr5:004794769	0.0	W/4794769-4798102	AT5G14830.1  mRNA_TE_gene  pseudo  gene_syn T9L3.130, T9L3_130  note Transposable element gene, retrotransposon family  
At5g14840	chr5:004798329	0.0	C/4798329-4800738	AT5G14840.1  pseudogenic_transcript  pseudo  gene_syn T9L3.140, T9L3_140  function pseudogene of unknown protein  note expressed protein  
At5g14850	chr5:004804745	0.0	C/4804745-4804977,4804384-4804501,4804102-4804206,4803508-4803791,4803131-4803412,4802792-4803008,4802546-4802697,4802300-4802469,4802155-4802183	AT5G14850.2  CDS  gene_syn T9L3.150, T9L3_150  go_component intrinsic to endoplasmic reticulum membrane|GO:0031227||IEA  go_process GPI anchor biosynthetic process|GO:0006506||IEA  go_component endoplasmic reticulum membrane|GO:0005789||ISS  go_process GPI anchor metabolic process|GO:0006505||ISS  go_function mannosyltransferase activity|GO:0000030||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product mannosyltransferase, putative  note mannosyltransferase, putative; FUNCTIONS IN: mannosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: GPI anchor biosynthetic process, GPI anchor metabolic process; LOCATED IN: endoplasmic reticulum membrane, intrinsic to endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Alg9-like mannosyltransferase (InterPro:IPR005599); BEST Arabidopsis thaliana protein match is: sugar binding / transferase, transferring glycosyl groups (TAIR:AT1G16900.1); Has 800 Blast hits to 787 proteins in 160 species: Archae - 0; Bacteria - 32; Metazoa - 330; Fungi - 276; Plants - 59; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).  protein_id AT5G14850.2p  transcript_id AT5G14850.2  protein_id AT5G14850.2p  transcript_id AT5G14850.2  
At5g14850	chr5:004804745	0.0	C/4804745-4804977,4804384-4804501,4804102-4804206,4803508-4803791,4803131-4803412,4802792-4803008,4802546-4802697,4802304-4802469,4802099-4802188	AT5G14850.1  CDS  gene_syn T9L3.150, T9L3_150  go_component intrinsic to endoplasmic reticulum membrane|GO:0031227||IEA  go_process GPI anchor biosynthetic process|GO:0006506||IEA  go_component endoplasmic reticulum membrane|GO:0005789||ISS  go_process GPI anchor metabolic process|GO:0006505||ISS  go_function mannosyltransferase activity|GO:0000030||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product mannosyltransferase, putative  note mannosyltransferase, putative; FUNCTIONS IN: mannosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: GPI anchor biosynthetic process, GPI anchor metabolic process; LOCATED IN: endoplasmic reticulum membrane, intrinsic to endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Alg9-like mannosyltransferase (InterPro:IPR005599); BEST Arabidopsis thaliana protein match is: sugar binding / transferase, transferring glycosyl groups (TAIR:AT1G16900.1); Has 800 Blast hits to 787 proteins in 160 species: Archae - 0; Bacteria - 32; Metazoa - 330; Fungi - 276; Plants - 59; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).  protein_id AT5G14850.1p  transcript_id AT5G14850.1  protein_id AT5G14850.1p  transcript_id AT5G14850.1  
At5g14860	chr5:004805887	0.0	W/4805887-4806834,4807038-4807376,4807568-4807759	AT5G14860.1  CDS  gene_syn T9L3.160, T9L3_160  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product transferase, transferring glycosyl groups  note transferase, transferring glycosyl groups; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213), Tudor subgroup (InterPro:IPR018351); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT2G16890.2); Has 4721 Blast hits to 4685 proteins in 340 species: Archae - 0; Bacteria - 161; Metazoa - 1734; Fungi - 14; Plants - 2664; Viruses - 124; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT5G14860.1p  transcript_id AT5G14860.1  protein_id AT5G14860.1p  transcript_id AT5G14860.1  
At5g14870	chr5:004810433	0.0	C/4810433-4810897,4810059-4810271,4809664-4809974,4809476-4809587,4809136-4809372,4808268-4809050	AT5G14870.1  CDS  gene_syn ATCNGC18, CNGC18, CYCLIC NUCLEOTIDE-GATED CHANNEL 18, T9L3.170, T9L3_170  gene CNGC18  function Encodes a member of the cyclic nucleotide gated channel family that is asymmetrically localized to the plasma membrane at the growing tip of the pollen tube and is involved in pollen tube growth. It likely directly transduces a cNMP signal into an ion flux that can produce a localized signal capable of regulating the pollen tip-growth machinery.  go_component apical plasma membrane|GO:0016324|17726111|IDA  go_process cellular calcium ion homeostasis|GO:0006874|17726111|IDA  go_process pollen tube growth|GO:0009860|17726111|IMP  go_function ion channel activity|GO:0005216||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function cyclic nucleotide binding|GO:0030551||ISS  product CNGC18 (CYCLIC NUCLEOTIDE-GATED CHANNEL 18); calmodulin binding / cyclic nucleotide binding / ion channel  note CYCLIC NUCLEOTIDE-GATED CHANNEL 18 (CNGC18); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: cellular calcium ion homeostasis, pollen tube growth; LOCATED IN: apical plasma membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding, conserved site (InterPro:IPR018488), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: ATCNGC16; calmodulin binding / cyclic nucleotide binding / ion channel (TAIR:AT3G48010.1); Has 2625 Blast hits to 2532 proteins in 207 species: Archae - 0; Bacteria - 46; Metazoa - 1260; Fungi - 0; Plants - 629; Viruses - 0; Other Eukaryotes - 690 (source: NCBI BLink).  protein_id AT5G14870.1p  transcript_id AT5G14870.1  protein_id AT5G14870.1p  transcript_id AT5G14870.1  
At5g14880	chr5:004814244	0.0	W/4814244-4814282,4814358-4814850,4814946-4814999,4815546-4815806,4815890-4815942,4816030-4816153,4816242-4816496,4816601-4817667	AT5G14880.1  CDS  gene_syn T9L3.180, T9L3_180  go_component membrane|GO:0016020||IEA  go_process potassium ion transport|GO:0006813||IEA  go_process potassium ion transport|GO:0006813||ISS  go_function potassium ion transmembrane transporter activity|GO:0015079||ISS  product potassium transporter, putative  note potassium transporter, putative; FUNCTIONS IN: potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Potassium uptake protein, kup (InterPro:IPR018519), K+ potassium transporter (InterPro:IPR003855); BEST Arabidopsis thaliana protein match is: KUP6; potassium ion transmembrane transporter (TAIR:AT1G70300.1); Has 2006 Blast hits to 1988 proteins in 581 species: Archae - 13; Bacteria - 1383; Metazoa - 0; Fungi - 59; Plants - 426; Viruses - 4; Other Eukaryotes - 121 (source: NCBI BLink).  protein_id AT5G14880.1p  transcript_id AT5G14880.1  protein_id AT5G14880.1p  transcript_id AT5G14880.1  
At5g14890	chr5:004818056	0.0	W/4818056-4818149,4818259-4818357,4818450-4818629,4819147-4819317,4819388-4819594,4819687-4819778,4819872-4820468,4820603-4820722,4820830-4821534	AT5G14890.1  CDS  gene_syn F2G14.10, F2G14_10  go_component endomembrane system|GO:0012505||IEA  product NHL repeat-containing protein  note NHL repeat-containing protein; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NHL repeat (InterPro:IPR001258), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: NHL repeat-containing protein (TAIR:AT1G70280.2); Has 1280 Blast hits to 666 proteins in 114 species: Archae - 18; Bacteria - 614; Metazoa - 132; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 392 (source: NCBI BLink).  protein_id AT5G14890.1p  transcript_id AT5G14890.1  protein_id AT5G14890.1p  transcript_id AT5G14890.1  
At5g14900	chr5:004822676	0.0	C/4822676-4823581	AT5G14900.1  CDS  gene_syn F2G14.20, F2G14_20  go_function helicase activity|GO:0004386||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product helicase associated (HA2) domain-containing protein  note helicase associated (HA2) domain-containing protein; FUNCTIONS IN: helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Helicase-associated region (InterPro:IPR007502), Region of unknown function DUF1605 (InterPro:IPR011709); BEST Arabidopsis thaliana protein match is: RNA helicase, putative (TAIR:AT3G62310.1); Has 4021 Blast hits to 3980 proteins in 683 species: Archae - 0; Bacteria - 1050; Metazoa - 1365; Fungi - 709; Plants - 250; Viruses - 0; Other Eukaryotes - 647 (source: NCBI BLink).  protein_id AT5G14900.1p  transcript_id AT5G14900.1  protein_id AT5G14900.1p  transcript_id AT5G14900.1  
At5g14910	chr5:004823815	0.0	W/4823815-4824108,4824343-4824396,4824660-4824719,4825068-4825196	AT5G14910.1  CDS  gene_syn F2G14.30, F2G14_30  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); Has 18 Blast hits to 18 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G14910.1p  transcript_id AT5G14910.1  protein_id AT5G14910.1p  transcript_id AT5G14910.1  
At5g14920	chr5:004826598	0.0	W/4826598-4826648,4826777-4826815,4826936-4827488,4827577-4827761	AT5G14920.1  CDS  gene_syn F2G14.40, F2G14_40  go_component endomembrane system|GO:0012505||IEA  go_process response to gibberellin stimulus|GO:0009739||ISS  product gibberellin-regulated family protein  note gibberellin-regulated family protein; INVOLVED IN: response to gibberellin stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: GASA1 (GAST1 PROTEIN HOMOLOG 1) (TAIR:AT1G75750.1); Has 151936 Blast hits to 53318 proteins in 1948 species: Archae - 727; Bacteria - 29184; Metazoa - 60097; Fungi - 18534; Plants - 16149; Viruses - 5950; Other Eukaryotes - 21295 (source: NCBI BLink).  protein_id AT5G14920.1p  transcript_id AT5G14920.1  protein_id AT5G14920.1p  transcript_id AT5G14920.1  
At5g14920	chr5:004826598	0.0	W/4826598-4826648,4826777-4826815,4826936-4827517	AT5G14920.2  CDS  gene_syn F2G14.40, F2G14_40  go_component endomembrane system|GO:0012505||IEA  go_process response to gibberellin stimulus|GO:0009739||ISS  product gibberellin-regulated family protein  note gibberellin-regulated family protein; INVOLVED IN: response to gibberellin stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 150950 Blast hits to 52887 proteins in 1910 species: Archae - 728; Bacteria - 28614; Metazoa - 60011; Fungi - 18442; Plants - 15716; Viruses - 5919; Other Eukaryotes - 21520 (source: NCBI BLink).  protein_id AT5G14920.2p  transcript_id AT5G14920.2  protein_id AT5G14920.2p  transcript_id AT5G14920.2  
At5g14930	chr5:004828754	0.0	W/4828754-4828773,4828926-4829292,4829543-4829868,4830159-4830165	AT5G14930.3  CDS  gene_syn F2G14.50, F2G14_50, SAG101, SENESCENCE-ASSOCIATED GENE 101  gene SAG101  function encodes an acyl hydrolase involved in senescence .  go_component cellular_component|GO:0005575||ND  go_process lipid metabolic process|GO:0006629||ISS  go_process aging|GO:0007568|11971136|IMP  go_function carboxylesterase activity|GO:0004091|11971136|IDA  go_function triacylglycerol lipase activity|GO:0004806||ISS  product SAG101 (SENESCENCE-ASSOCIATED GENE 101); carboxylesterase/ triacylglycerol lipase  note SENESCENCE-ASSOCIATED GENE 101 (SAG101); FUNCTIONS IN: triacylglycerol lipase activity, carboxylesterase activity; INVOLVED IN: aging, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: PAD4 (PHYTOALEXIN DEFICIENT 4); lipase/ protein binding / triacylglycerol lipase (TAIR:AT3G52430.1); Has 153 Blast hits to 153 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT5G14930.3p  transcript_id AT5G14930.3  protein_id AT5G14930.3p  transcript_id AT5G14930.3  
At5g14930	chr5:004828754	0.0	W/4828754-4828773,4828926-4829292,4829543-4830769	AT5G14930.2  CDS  gene_syn F2G14.50, F2G14_50, SAG101, SENESCENCE-ASSOCIATED GENE 101  gene SAG101  function encodes an acyl hydrolase involved in senescence .  go_component cellular_component|GO:0005575||ND  go_process lipid metabolic process|GO:0006629||ISS  go_process aging|GO:0007568|11971136|IMP  go_function carboxylesterase activity|GO:0004091|11971136|IDA  go_function triacylglycerol lipase activity|GO:0004806||ISS  product SAG101 (SENESCENCE-ASSOCIATED GENE 101); carboxylesterase/ triacylglycerol lipase  note SENESCENCE-ASSOCIATED GENE 101 (SAG101); FUNCTIONS IN: triacylglycerol lipase activity, carboxylesterase activity; INVOLVED IN: aging, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: PAD4 (PHYTOALEXIN DEFICIENT 4); lipase/ protein binding / triacylglycerol lipase (TAIR:AT3G52430.1); Has 424 Blast hits to 354 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 407; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT5G14930.2p  transcript_id AT5G14930.2  protein_id AT5G14930.2p  transcript_id AT5G14930.2  
At5g14930	chr5:004828754	0.0	W/4828754-4828773,4828926-4829301	AT5G14930.1  CDS  gene_syn F2G14.50, F2G14_50, SAG101, SENESCENCE-ASSOCIATED GENE 101  gene SAG101  function encodes an acyl hydrolase involved in senescence .  go_component cellular_component|GO:0005575||ND  go_process lipid metabolic process|GO:0006629||ISS  go_process aging|GO:0007568|11971136|IMP  go_function carboxylesterase activity|GO:0004091|11971136|IDA  go_function triacylglycerol lipase activity|GO:0004806||ISS  product SAG101 (SENESCENCE-ASSOCIATED GENE 101); carboxylesterase/ triacylglycerol lipase  note SENESCENCE-ASSOCIATED GENE 101 (SAG101); FUNCTIONS IN: triacylglycerol lipase activity, carboxylesterase activity; INVOLVED IN: aging, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G14930.1p  transcript_id AT5G14930.1  protein_id AT5G14930.1p  transcript_id AT5G14930.1  
At5g14940	chr5:004834040	0.0	C/4834040-4834312,4832727-4833247,4831748-4832612	AT5G14940.1  CDS  gene_syn F2G14.60, F2G14_60  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_process response to nematode|GO:0009624|16478044|IEP  go_function transporter activity|GO:0005215||ISS  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: amino acid transmembrane transporter activity, transporter activity; INVOLVED IN: oligopeptide transport, response to nematode; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT3G01350.1); Has 3284 Blast hits to 3158 proteins in 562 species: Archae - 0; Bacteria - 1109; Metazoa - 484; Fungi - 255; Plants - 1122; Viruses - 0; Other Eukaryotes - 314 (source: NCBI BLink).  protein_id AT5G14940.1p  transcript_id AT5G14940.1  protein_id AT5G14940.1p  transcript_id AT5G14940.1  
At5g14950	chr5:004841217	0.0	C/4841217-4841792,4840771-4840920,4840611-4840643,4837484-4840246	AT5G14950.1  CDS  gene_syn ATGMII, F2G14.70, F2G14_70, GMII, GOLGI ALPHA-MANNOSIDASE II  gene GMII  function Encodes a golgi alpha-mannosidase, an enzyme responsible for the formation of major complex-type N-glycans.  go_component Golgi apparatus|GO:0005794|11432912|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process protein amino acid N-linked glycosylation|GO:0006487|11432912|IDA  go_function alpha-mannosidase activity|GO:0004559|11432912|IDA  go_function alpha-mannosidase activity|GO:0004559||ISS  product GMII (GOLGI ALPHA-MANNOSIDASE II); alpha-mannosidase  note GOLGI ALPHA-MANNOSIDASE II (GMII); FUNCTIONS IN: alpha-mannosidase activity; INVOLVED IN: protein amino acid N-linked glycosylation; LOCATED IN: Golgi apparatus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central region (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 38 protein (TAIR:AT5G66150.1); Has 1218 Blast hits to 1189 proteins in 252 species: Archae - 11; Bacteria - 334; Metazoa - 602; Fungi - 83; Plants - 65; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).  protein_id AT5G14950.1p  transcript_id AT5G14950.1  protein_id AT5G14950.1p  transcript_id AT5G14950.1  
At5g14960	chr5:004843966	0.0	W/4843966-4844036,4844141-4844208,4844369-4844421,4844529-4844606,4844708-4844764,4844843-4844921,4845332-4845399,4845490-4845559,4845652-4845713,4845804-4846203,4846300-4846373	AT5G14960.1  CDS  gene_syn DEL2, DP-E2F-LIKE 2, E2FD, E2L1, F2G14.80, F2G14_80  gene DEL2  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634|11867638|IDA  go_function DNA binding|GO:0003677|11786543|IDA  go_function DNA binding|GO:0003677|11867638|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  product DEL2 (DP-E2F-LIKE 2); DNA binding / transcription factor  note DP-E2F-LIKE 2 (DEL2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Transcription factor E2F/dimerisation partner (TDP) (InterPro:IPR003316), E2F Family (InterPro:IPR015633); BEST Arabidopsis thaliana protein match is: DEL3 (DP-E2F-LIKE PROTEIN 3); DNA binding / transcription factor (TAIR:AT3G01330.1); Has 743 Blast hits to 682 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 508; Fungi - 4; Plants - 130; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT5G14960.1p  transcript_id AT5G14960.1  protein_id AT5G14960.1p  transcript_id AT5G14960.1  
At5g14970	chr5:004847368	0.0	W/4847368-4847801,4847868-4848123,4848223-4848321,4848403-4848605,4848685-4848760	AT5G14970.1  CDS  gene_syn F2G14.90, F2G14_90  product unknown protein  note unknown protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14910.1); Has 481 Blast hits to 320 proteins in 77 species: Archae - 0; Bacteria - 238; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 193 (source: NCBI BLink).  protein_id AT5G14970.1p  transcript_id AT5G14970.1  protein_id AT5G14970.1p  transcript_id AT5G14970.1  
At5g14980	chr5:004849600	0.0	W/4849600-4850583	AT5G14980.1  CDS  gene_syn F2G14.100, F2G14_100  go_function catalytic activity|GO:0003824||ISS  product esterase/lipase/thioesterase family protein  note esterase/lipase/thioesterase family protein; FUNCTIONS IN: catalytic activity; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: esterase/lipase/thioesterase family protein (TAIR:AT5G19290.1); Has 1843 Blast hits to 1839 proteins in 608 species: Archae - 17; Bacteria - 1068; Metazoa - 130; Fungi - 88; Plants - 237; Viruses - 32; Other Eukaryotes - 271 (source: NCBI BLink).  protein_id AT5G14980.1p  transcript_id AT5G14980.1  protein_id AT5G14980.1p  transcript_id AT5G14980.1  
At5g14990	chr5:004850764	0.0	W/4850764-4852481,4852555-4852681,4852751-4852852,4852950-4853003	AT5G14990.1  CDS  gene_syn F2G14.110, F2G14_110  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT2G34730.1); Has 6898 Blast hits to 4935 proteins in 410 species: Archae - 63; Bacteria - 379; Metazoa - 3405; Fungi - 417; Plants - 182; Viruses - 15; Other Eukaryotes - 2437 (source: NCBI BLink).  protein_id AT5G14990.1p  transcript_id AT5G14990.1  protein_id AT5G14990.1p  transcript_id AT5G14990.1  
At5g14995	chr5:004853413	0.0	W/4853413-4853718	AT5G14995.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G15000.1); Has 40 Blast hits to 39 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G14995.1p  transcript_id AT5G14995.1  protein_id AT5G14995.1p  transcript_id AT5G14995.1  
At5g15000	chr5:004854875	0.0	W/4854875-4855171	AT5G15000.1  CDS  gene_syn F2G14.120, F2G14_120  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G14995.1); Has 25 Blast hits to 24 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G15000.1p  transcript_id AT5G15000.1  protein_id AT5G15000.1p  transcript_id AT5G15000.1  
At5g15008	chr5:004856975	0.0	C/4856975-4857139	AT5G15008.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G15008.1p  transcript_id AT5G15008.1  protein_id AT5G15008.1p  transcript_id AT5G15008.1  
At5g15010	chr5:004857361	0.0	W/4857361-4858959	AT5G15010.1  CDS  gene_syn F2G14.130, F2G14_130  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G80880.1); Has 16537 Blast hits to 5561 proteins in 175 species: Archae - 3; Bacteria - 14; Metazoa - 410; Fungi - 209; Plants - 15273; Viruses - 0; Other Eukaryotes - 628 (source: NCBI BLink).  protein_id AT5G15010.1p  transcript_id AT5G15010.1  protein_id AT5G15010.1p  transcript_id AT5G15010.1  
At5g15020	chr5:004865493	0.0	C/4865493-4865569,4865208-4865384,4864946-4865126,4864752-4864850,4864495-4864662,4864126-4864408,4863820-4863956,4863677-4863752,4863566-4863601,4863270-4863463,4863041-4863195,4862822-4862949,4862436-4862690,4861632-4862288,4861469-4861536,4860757-4861365,4860585-4860685,4860330-4860468,4860081-4860233,4859812-4859975,4859628-4859739,4859408-4859542	AT5G15020.1  CDS  gene_syn F2G14.140, F2G14_140, SIN3-LIKE 2, SNL2  gene SNL2  function Encodes a homolog of the transcriptional repressor SIN3 (AT1G24190).  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function molecular_function|GO:0003674||ND  product SNL2 (SIN3-LIKE 2)  note SIN3-LIKE 2 (SNL2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SNL1 (SIN3-LIKE 1) (TAIR:AT3G01320.1); Has 6923 Blast hits to 4409 proteins in 395 species: Archae - 28; Bacteria - 626; Metazoa - 2873; Fungi - 1148; Plants - 447; Viruses - 248; Other Eukaryotes - 1553 (source: NCBI BLink).  protein_id AT5G15020.1p  transcript_id AT5G15020.1  protein_id AT5G15020.1p  transcript_id AT5G15020.1  
At5g15030	chr5:004869024	0.0	C/4869024-4869133,4868760-4868843,4868339-4868506,4867642-4867724,4867479-4867560,4867162-4867320,4866954-4867083	AT5G15030.1  CDS  gene_syn F2G14.150, F2G14_150  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_component cytosol|GO:0005829|18433157|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function molecular_function|GO:0003674||ND  product paired amphipathic helix repeat-containing protein  note paired amphipathic helix repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cytosol, nucleus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SNL1 (SIN3-LIKE 1) (TAIR:AT3G01320.1); Has 461 Blast hits to 377 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 191; Fungi - 100; Plants - 153; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT5G15030.1p  transcript_id AT5G15030.1  protein_id AT5G15030.1p  transcript_id AT5G15030.1  
At5g15040	chr5:004870147	0.0	C/4870147-4870253,4869908-4870064	AT5G15040.1  CDS  gene_syn F2G14.160, F2G14_160  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function molecular_function|GO:0003674||ND  product paired amphipathic helix repeat-containing protein  note paired amphipathic helix repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SNL2 (SIN3-LIKE 2) (TAIR:AT5G15020.1); Has 372 Blast hits to 362 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 173; Fungi - 85; Plants - 104; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G15040.1p  transcript_id AT5G15040.1  protein_id AT5G15040.1p  transcript_id AT5G15040.1  
At5g15050	chr5:004872857	0.0	C/4872857-4873454,4872693-4872768,4872494-4872609,4871820-4872334	AT5G15050.1  CDS  gene_syn F2G14.170, F2G14_170  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function acetylglucosaminyltransferase activity|GO:0008375||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein  note glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 14 (InterPro:IPR003406); BEST Arabidopsis thaliana protein match is: glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein (TAIR:AT5G39990.1); Has 679 Blast hits to 677 proteins in 89 species: Archae - 0; Bacteria - 26; Metazoa - 439; Fungi - 0; Plants - 190; Viruses - 14; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G15050.1p  transcript_id AT5G15050.1  protein_id AT5G15050.1p  transcript_id AT5G15050.1  
At5g15060	chr5:004875381	0.0	C/4875381-4875806	AT5G15060.1  CDS  gene_syn F2G14.180, F2G14_180  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD4 (LOB DOMAIN-CONTAINING PROTEIN 4) (TAIR:AT1G31320.1); Has 430 Blast hits to 427 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 430; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G15060.1p  transcript_id AT5G15060.1  protein_id AT5G15060.1p  transcript_id AT5G15060.1  
At5g15070	chr5:004876898	0.0	W/4876898-4876966,4877139-4877198,4877466-4877512,4877696-4877779,4877862-4877925,4878100-4878253,4878621-4878691,4878919-4879023,4879319-4879411,4879594-4879668,4880035-4880120,4880465-4880671,4880758-4880857,4880946-4881016,4881385-4881463,4881621-4881779,4881936-4881978,4882133-4882215,4882330-4882392,4882471-4882545,4882896-4883021,4883290-4883531,4883609-4883653,4883764-4883830,4884049-4884120,4884264-4884508,4884599-4884656,4884900-4885067,4885175-4885249,4885352-4885615	AT5G15070.1  CDS  gene_syn F2G14.190, F2G14_190  go_function acid phosphatase activity|GO:0003993||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function transition metal ion binding|GO:0046914||IEA  go_component cellular_component|GO:0005575||ND  product acid phosphatase/ oxidoreductase/ transition metal ion binding  note acid phosphatase/ oxidoreductase/ transition metal ion binding; FUNCTIONS IN: oxidoreductase activity, transition metal ion binding, acid phosphatase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Histidine acid phosphatase (InterPro:IPR000560), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078); BEST Arabidopsis thaliana protein match is: acid phosphatase/ oxidoreductase/ transition metal ion binding (TAIR:AT3G01310.2); Has 470 Blast hits to 378 proteins in 141 species: Archae - 0; Bacteria - 5; Metazoa - 203; Fungi - 123; Plants - 35; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT5G15070.1p  transcript_id AT5G15070.1  protein_id AT5G15070.1p  transcript_id AT5G15070.1  
At5g15080	chr5:004886414	0.0	W/4886414-4886648,4886981-4887327,4887410-4887545,4887627-4887763,4887837-4887960,4888053-4888555	AT5G15080.1  CDS  gene_syn F2G14.200, F2G14_200  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT3G01300.1); Has 82537 Blast hits to 81504 proteins in 2665 species: Archae - 50; Bacteria - 7584; Metazoa - 36173; Fungi - 6334; Plants - 18234; Viruses - 349; Other Eukaryotes - 13813 (source: NCBI BLink).  protein_id AT5G15080.1p  transcript_id AT5G15080.1  protein_id AT5G15080.1p  transcript_id AT5G15080.1  
At5g15090	chr5:004891341	0.0	C/4891341-4891389,4890817-4890884,4890523-4890633,4890333-4890419,4890031-4890239,4889641-4889941	AT5G15090.1  CDS  gene_syn ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 3, ATVDAC3, F2G14.210, F2G14_210, VDAC3, VOLTAGE DEPENDENT ANION CHANNEL 3  gene VDAC3  function Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component mitochondrion|GO:0005739|15276431|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component mitochondrion|GO:0005739|19326079|IDA  go_component mitochondrial outer membrane|GO:0005741||ISS  go_component chloroplast|GO:0009507|19326079|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process anion transport|GO:0006820||ISS  go_process response to bacterium|GO:0009617|19326079|IEP  go_function voltage-gated anion channel activity|GO:0008308|19326079|IMP  go_function voltage-gated anion channel activity|GO:0008308||ISS  product VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3); voltage-gated anion channel  note VOLTAGE DEPENDENT ANION CHANNEL 3 (VDAC3); FUNCTIONS IN: voltage-gated anion channel activity; INVOLVED IN: defense response to bacterium, response to bacterium, anion transport; LOCATED IN: in 10 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Porin, eukaryotic type (InterPro:IPR001925); BEST Arabidopsis thaliana protein match is: VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1); voltage-gated anion channel (TAIR:AT3G01280.1); Has 676 Blast hits to 675 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 377; Fungi - 102; Plants - 182; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT5G15090.1p  transcript_id AT5G15090.1  protein_id AT5G15090.1p  transcript_id AT5G15090.1  
At5g15100	chr5:004893412	0.0	C/4893412-4893937,4893147-4893336,4892730-4892815,4892486-4892643,4892327-4892403,4892159-4892225	AT5G15100.1  CDS  gene_syn F2G14.220, F2G14_220, PIN-FORMED 8, PIN8  gene PIN8  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process auxin polar transport|GO:0009926||ISS  go_function transporter activity|GO:0005215||ISS  go_function auxin:hydrogen symporter activity|GO:0009672||ISS  product PIN8 (PIN-FORMED 8); auxin:hydrogen symporter/ transporter  note PIN-FORMED 8 (PIN8); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity; INVOLVED IN: auxin polar transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: PIN5 (PIN-FORMED 5); auxin:hydrogen symporter/ transporter (TAIR:AT5G16530.1); Has 1781 Blast hits to 1643 proteins in 443 species: Archae - 33; Bacteria - 877; Metazoa - 86; Fungi - 0; Plants - 335; Viruses - 0; Other Eukaryotes - 450 (source: NCBI BLink).  protein_id AT5G15100.1p  transcript_id AT5G15100.1  protein_id AT5G15100.1p  transcript_id AT5G15100.1  
At5g15110	chr5:004895966	0.0	W/4895966-4896159,4896286-4897039,4897133-4897378,4897458-4897682	AT5G15110.1  CDS  gene_syn F2G14.230, F2G14_230  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function lyase activity|GO:0016829||ISS  go_function pectate lyase activity|GO:0030570||ISS  product lyase/ pectate lyase  note lyase/ pectate lyase; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectate lyase, N-terminal (InterPro:IPR007524), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectate lyase family protein (TAIR:AT3G01270.1); Has 859 Blast hits to 856 proteins in 162 species: Archae - 0; Bacteria - 361; Metazoa - 0; Fungi - 93; Plants - 399; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G15110.1p  transcript_id AT5G15110.1  protein_id AT5G15110.1p  transcript_id AT5G15110.1  
At5g15120	chr5:004898814	0.0	W/4898814-4899084,4899168-4899295,4899379-4899508,4899917-4900138,4900221-4900351	AT5G15120.1  CDS  gene_syn F2G14.1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1637 (InterPro:IPR012864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39890.1); Has 239 Blast hits to 239 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 84; Fungi - 0; Plants - 130; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT5G15120.1p  transcript_id AT5G15120.1  protein_id AT5G15120.1p  transcript_id AT5G15120.1  
At5g15130	chr5:004904426	0.0	W/4904426-4904509,4904904-4905494,4905610-4905723,4906022-4906879	AT5G15130.1  CDS  gene_syn AtWRKY72, F8M21.20, F8M21_20, WRKY72  gene WRKY72  function member of WRKY Transcription Factor; Group II-b  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY72; transcription factor  note WRKY72; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY61; transcription factor (TAIR:AT1G18860.1); Has 5335 Blast hits to 2763 proteins in 255 species: Archae - 0; Bacteria - 457; Metazoa - 702; Fungi - 324; Plants - 2003; Viruses - 9; Other Eukaryotes - 1840 (source: NCBI BLink).  protein_id AT5G15130.1p  transcript_id AT5G15130.1  protein_id AT5G15130.1p  transcript_id AT5G15130.1  
At5g15140	chr5:004908686	0.0	W/4908686-4909256,4909364-4909413,4909529-4909652,4909745-4909852,4909961-4910270,4910361-4910670	AT5G15140.1  CDS  gene_syn F8M21.30, F8M21_30  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process hexose metabolic process|GO:0019318||IEA  go_process galactose metabolic process|GO:0006012||ISS  go_function aldose 1-epimerase activity|GO:0004034||ISS  product aldose 1-epimerase family protein  note aldose 1-epimerase family protein; FUNCTIONS IN: aldose 1-epimerase activity; INVOLVED IN: galactose metabolic process, hexose metabolic process, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Aldose 1-epimerase (InterPro:IPR008183), Aldose-1-epimerase (InterPro:IPR015443), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718); BEST Arabidopsis thaliana protein match is: aldose 1-epimerase/ carbohydrate binding / catalytic/ isomerase (TAIR:AT3G01260.1); Has 78712 Blast hits to 30438 proteins in 1442 species: Archae - 187; Bacteria - 21250; Metazoa - 19017; Fungi - 8477; Plants - 3694; Viruses - 803; Other Eukaryotes - 25284 (source: NCBI BLink).  protein_id AT5G15140.1p  transcript_id AT5G15140.1  protein_id AT5G15140.1p  transcript_id AT5G15140.1  
At5g15150	chr5:004915438	0.0	C/4915438-4915609,4914841-4915277,4913951-4914286	AT5G15150.1  CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX 3, ATHB-3, ATHB3, F8M21.40, F8M21_40, HAT7, HOMEOBOX FROM ARABIDOPSIS THALIANA 7, HOMEOBOX PROTEIN  gene ATHB-3  function homeobox-containing gene with an unusual feature: a leucine zipper motif adjacent to the carboxyl-terminal of the homeodomain structure. This gene is expressed primarily in the cortex of the root and the stem.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677|1349836|ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function sequence-specific DNA binding|GO:0043565|11247607|IDA  product ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3); DNA binding / sequence-specific DNA binding / transcription factor  note ARABIDOPSIS THALIANA HOMEOBOX 3 (ATHB-3); FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20); DNA binding / transcription factor (TAIR:AT3G01220.1); Has 9308 Blast hits to 9269 proteins in 486 species: Archae - 0; Bacteria - 4; Metazoa - 7573; Fungi - 123; Plants - 1427; Viruses - 5; Other Eukaryotes - 176 (source: NCBI BLink).  protein_id AT5G15150.1p  transcript_id AT5G15150.1  protein_id AT5G15150.1p  transcript_id AT5G15150.1  
At5g15160	chr5:004922425	0.0	C/4922425-4922553,4921487-4921642	AT5G15160.1  CDS  gene_syn F8M21.50, F8M21_50  go_component vacuole|GO:0005773|15539469|IDA  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product bHLH family protein  note bHLH family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: vacuole; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092); BEST Arabidopsis thaliana protein match is: PRE1 (PACLOBUTRAZOL RESISTANCE1); DNA binding / transcription factor (TAIR:AT5G39860.1); Has 72 Blast hits to 72 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G15160.1p  transcript_id AT5G15160.1  protein_id AT5G15160.1p  transcript_id AT5G15160.1  
At5g15170	chr5:004929293	0.0	C/4929293-4929307,4929029-4929208,4928776-4928946,4928555-4928692,4928416-4928476,4928203-4928279,4927768-4928118,4927555-4927689,4927324-4927473,4927141-4927244,4927011-4927064,4926842-4926932,4926672-4926755,4926452-4926590,4926300-4926367	AT5G15170.1  CDS  gene_syn F8M21.60, F8M21_60  go_component nucleus|GO:0005634||IEA  go_process DNA repair|GO:0006281||IEA  go_function phosphoric diester hydrolase activity|GO:0008081||IEA  product tyrosyl-DNA phosphodiesterase-related  note tyrosyl-DNA phosphodiesterase-related; FUNCTIONS IN: phosphoric diester hydrolase activity; INVOLVED IN: DNA repair; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Tyrosyl-DNA phosphodiesterase (InterPro:IPR010347), SMAD/FHA domain (InterPro:IPR008984); Has 311 Blast hits to 309 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 155; Fungi - 88; Plants - 24; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT5G15170.1p  transcript_id AT5G15170.1  protein_id AT5G15170.1p  transcript_id AT5G15170.1  
At5g15175	chr5:004929560	0.0	W/4929560-4929633	AT5G15175.1  tRNA  gene_syn 67628.TRNA-VAL-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Val (anticodon: CAC)  transcript_id AT5G15175.1  
At5g15180	chr5:004930561	0.0	W/4930561-4930791,4930876-4931061,4931385-4931550,4931805-4932211	AT5G15180.1  CDS  gene_syn F8M21.70, F8M21_70  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: flower, root, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase 27 (PER27) (P27) (PRXR7) (TAIR:AT3G01190.1); Has 2845 Blast hits to 2829 proteins in 193 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 47; Plants - 2769; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT5G15180.1p  transcript_id AT5G15180.1  protein_id AT5G15180.1p  transcript_id AT5G15180.1  
At5g15190	chr5:004933148	0.0	C/4933148-4933498	AT5G15190.1  CDS  gene_syn F8M21.80, F8M21_80  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G15190.1p  transcript_id AT5G15190.1  protein_id AT5G15190.1p  transcript_id AT5G15190.1  
At5g15190	chr5:004933148	0.0	C/4933148-4933498	AT5G15190.2  CDS  gene_syn F8M21.80, F8M21_80  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G15190.2p  transcript_id AT5G15190.2  protein_id AT5G15190.2p  transcript_id AT5G15190.2  
At5g15200	chr5:004936307	0.0	C/4936307-4936334,4935602-4936044	AT5G15200.2  CDS  gene_syn F8M21.90, F8M21_90  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S9 (RPS9B)  note 40S ribosomal protein S9 (RPS9B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, chloroplast, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S4 (InterPro:IPR001912), Ribosomal protein S4, conserved site (InterPro:IPR018079), Ribosomal protein S4/S9, eukaryotic/archaeal (InterPro:IPR005710), RNA-binding S4 (InterPro:IPR002942); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S9 (RPS9C) (TAIR:AT5G39850.1); Has 905 Blast hits to 905 proteins in 306 species: Archae - 173; Bacteria - 0; Metazoa - 283; Fungi - 123; Plants - 105; Viruses - 0; Other Eukaryotes - 221 (source: NCBI BLink).  protein_id AT5G15200.2p  transcript_id AT5G15200.2  protein_id AT5G15200.2p  transcript_id AT5G15200.2  
At5g15200	chr5:004936307	0.0	C/4936307-4936334,4935663-4936044,4935124-4935310	AT5G15200.1  CDS  gene_syn F8M21.90, F8M21_90  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S9 (RPS9B)  note 40S ribosomal protein S9 (RPS9B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S4 (InterPro:IPR001912), Ribosomal protein S4, conserved site (InterPro:IPR018079), Ribosomal protein S4/S9, eukaryotic/archaeal (InterPro:IPR005710), RNA-binding S4 (InterPro:IPR002942); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S9 (RPS9C) (TAIR:AT5G39850.1); Has 4591 Blast hits to 4589 proteins in 2325 species: Archae - 171; Bacteria - 272; Metazoa - 335; Fungi - 189; Plants - 2943; Viruses - 0; Other Eukaryotes - 681 (source: NCBI BLink).  protein_id AT5G15200.1p  transcript_id AT5G15200.1  protein_id AT5G15200.1p  transcript_id AT5G15200.1  
At5g15210	chr5:004937874	0.0	C/4937874-4938689	AT5G15210.1  CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 30, ATHB30, F8M21.100, F8M21_100, ZFHD3, ZINC FINGER HOMEODOMAIN 3  gene ATHB30  function Encodes ZFHD3, a member of the zinc finger homeodomain transcriptional factor family.  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677|16428600|ISS  go_function transcription factor activity|GO:0003700||ISS  product ATHB30 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 30); DNA binding / transcription factor  note ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 30 (ATHB30); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein Cys/His-rich dimerisation region (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: AtHB34 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 34); DNA binding / transcription factor (TAIR:AT3G28920.1); Has 279 Blast hits to 266 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 0; Plants - 249; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G15210.1p  transcript_id AT5G15210.1  protein_id AT5G15210.1p  transcript_id AT5G15210.1  
At5g15220	chr5:004942037	0.0	C/4942037-4942133,4941812-4941936,4941466-4941708	AT5G15220.1  CDS  gene_syn F8M21.110, F8M21_110  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L27 family protein  note ribosomal protein L27 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein L27 (InterPro:IPR001684), Ribosomal protein L27, conserved site (InterPro:IPR018261); BEST Arabidopsis thaliana protein match is: ribosomal protein L27 family protein (TAIR:AT2G16930.3); Has 5114 Blast hits to 5114 proteins in 1538 species: Archae - 0; Bacteria - 2974; Metazoa - 94; Fungi - 94; Plants - 70; Viruses - 0; Other Eukaryotes - 1882 (source: NCBI BLink).  protein_id AT5G15220.1p  transcript_id AT5G15220.1  protein_id AT5G15220.1p  transcript_id AT5G15220.1  
At5g15230	chr5:004945017	0.0	W/4945017-4945082,4945283-4945321,4945440-4945473,4945844-4946025	AT5G15230.1  CDS  gene_syn F8M21.120, F8M21_120, GASA4, GAST1 PROTEIN HOMOLOG 4  gene GASA4  function gibberellin-regulated (GASA4)  go_component endomembrane system|GO:0012505||IEA  go_process response to gibberellin stimulus|GO:0009739|9520278|IMP  go_process gibberellic acid mediated signaling|GO:0009740|11598220|TAS  go_function molecular_function|GO:0003674||ND  product GASA4 (GAST1 PROTEIN HOMOLOG 4)  note GAST1 PROTEIN HOMOLOG 4 (GASA4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to gibberellin stimulus, gibberellic acid mediated signaling; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: gibberellin-responsive protein, putative (TAIR:AT1G74670.1); Has 250 Blast hits to 250 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 250; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G15230.1p  transcript_id AT5G15230.1  protein_id AT5G15230.1p  transcript_id AT5G15230.1  
At5g15230	chr5:004945286	0.0	W/4945286-4945321,4945440-4945473,4945844-4946025	AT5G15230.2  CDS  gene_syn F8M21.120, F8M21_120, GASA4, GAST1 PROTEIN HOMOLOG 4  gene GASA4  function gibberellin-regulated (GASA4)  go_process response to gibberellin stimulus|GO:0009739|9520278|IMP  go_process gibberellic acid mediated signaling|GO:0009740|11598220|TAS  go_function molecular_function|GO:0003674||ND  product GASA4 (GAST1 PROTEIN HOMOLOG 4)  note GAST1 PROTEIN HOMOLOG 4 (GASA4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to gibberellin stimulus, gibberellic acid mediated signaling; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: gibberellin-responsive protein, putative (TAIR:AT1G74670.1); Has 249 Blast hits to 249 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 249; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G15230.2p  transcript_id AT5G15230.2  protein_id AT5G15230.2p  transcript_id AT5G15230.2  
At5g15240	chr5:004947762	0.0	W/4947762-4947903,4948996-4949276,4949693-4950211	AT5G15240.2  CDS  gene_syn F8M21.130, F8M21_130  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_process response to salt stress|GO:0009651|11351099|IEP  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product amino acid transporter family protein  note amino acid transporter family protein; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: response to salt stress, amino acid transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid transporter family protein (TAIR:AT3G28960.1); Has 2551 Blast hits to 2099 proteins in 170 species: Archae - 0; Bacteria - 34; Metazoa - 1334; Fungi - 328; Plants - 656; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink).  protein_id AT5G15240.2p  transcript_id AT5G15240.2  protein_id AT5G15240.2p  transcript_id AT5G15240.2  
At5g15240	chr5:004947762	0.0	W/4947762-4947903,4948996-4949606,4949693-4950211	AT5G15240.1  CDS  gene_syn F8M21.130, F8M21_130  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_process response to salt stress|GO:0009651|11351099|IEP  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product amino acid transporter family protein  note amino acid transporter family protein; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: response to salt stress, amino acid transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid transporter family protein (TAIR:AT3G28960.1); Has 3626 Blast hits to 3572 proteins in 223 species: Archae - 7; Bacteria - 103; Metazoa - 1605; Fungi - 692; Plants - 672; Viruses - 8; Other Eukaryotes - 539 (source: NCBI BLink).  protein_id AT5G15240.1p  transcript_id AT5G15240.1  protein_id AT5G15240.1p  transcript_id AT5G15240.1  
At5g15250	chr5:004952155	0.0	C/4952155-4952777,4951545-4952085,4951162-4951475,4950832-4951072,4950411-4950758	AT5G15250.1  CDS  gene_syn ATFTSH6, F8M21.140, F8M21_140, FTSH PROTEASE 6, FTSH6  gene FTSH6  function Encodes an FtsH protease that is localized to the chloroplast. AtFtsH6 is involved in the degradation of both Lhcb3 and Lhcb1 during senescence and high-light acclimation.  go_component chloroplast|GO:0009507|14630971|IDA  go_process PSII associated light-harvesting complex II catabolic process|GO:0010304|16157880|IEP  go_function ATP-dependent peptidase activity|GO:0004176|11299370|ISS  go_function peptidase activity|GO:0008233|16157880|IEP  go_function metallopeptidase activity|GO:0008237||ISS  go_function zinc ion binding|GO:0008270|16157880|ISS  go_function ATPase activity|GO:0016887||ISS  product FTSH6 (FTSH PROTEASE 6); ATP-dependent peptidase/ ATPase/ metallopeptidase/ peptidase/ zinc ion binding  note FTSH PROTEASE 6 (FTSH6); FUNCTIONS IN: metallopeptidase activity, peptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding; INVOLVED IN: PSII associated light-harvesting complex II catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: VAR2 (VARIEGATED 2); ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion binding (TAIR:AT2G30950.1); Has 25638 Blast hits to 23984 proteins in 1804 species: Archae - 925; Bacteria - 6621; Metazoa - 4220; Fungi - 2480; Plants - 1858; Viruses - 21; Other Eukaryotes - 9513 (source: NCBI BLink).  protein_id AT5G15250.1p  transcript_id AT5G15250.1  protein_id AT5G15250.1p  transcript_id AT5G15250.1  
At5g15254	chr5:004953095	0.0	C/4953095-4953274	AT5G15254.1  CDS  product unknown protein  note unknown protein; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G15254.1p  transcript_id AT5G15254.1  protein_id AT5G15254.1p  transcript_id AT5G15254.1  
At5g15260	chr5:004953646	0.0	C/4953646-4954350	AT5G15260.1  CDS  gene_syn F8M21.150, F8M21_150  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_component chloroplast|GO:0009507||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  product structural constituent of ribosome  note structural constituent of ribosome; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, chloroplast; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e (InterPro:IPR008195); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT3G01170.1); Has 39 Blast hits to 39 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G15260.1p  transcript_id AT5G15260.1  protein_id AT5G15260.1p  transcript_id AT5G15260.1  
At5g15265	chr5:004956505	0.0	W/4956505-4956574,4956710-4956780,4957241-4957351	AT5G15265.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G15265.1p  transcript_id AT5G15265.1  protein_id AT5G15265.1p  transcript_id AT5G15265.1  
At5g15270	chr5:004958738	0.0	W/4958738-4959337,4959455-4959865,4959954-4960211,4960317-4960574,4960663-4960733,4960899-4960947	AT5G15270.1  CDS  gene_syn F8M21.160, F8M21_160  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product KH domain-containing protein  note KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT1G14170.3); Has 4366 Blast hits to 1970 proteins in 160 species: Archae - 0; Bacteria - 37; Metazoa - 3196; Fungi - 465; Plants - 517; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).  protein_id AT5G15270.1p  transcript_id AT5G15270.1  protein_id AT5G15270.1p  transcript_id AT5G15270.1  
At5g15270	chr5:004958738	0.0	W/4958738-4959337,4959455-4959865,4959954-4960211,4960317-4960574,4960663-4960733,4960899-4960947	AT5G15270.2  CDS  gene_syn F8M21.160, F8M21_160  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product KH domain-containing protein  note KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT1G14170.3); Has 4366 Blast hits to 1970 proteins in 160 species: Archae - 0; Bacteria - 37; Metazoa - 3196; Fungi - 465; Plants - 517; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).  protein_id AT5G15270.2p  transcript_id AT5G15270.2  protein_id AT5G15270.2p  transcript_id AT5G15270.2  
At5g15280	chr5:004962293	0.0	W/4962293-4965976	AT5G15280.1  CDS  gene_syn F8M21.170, F8M21_170  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G55840.1); Has 15513 Blast hits to 3320 proteins in 123 species: Archae - 2; Bacteria - 6; Metazoa - 107; Fungi - 78; Plants - 14937; Viruses - 0; Other Eukaryotes - 383 (source: NCBI BLink).  protein_id AT5G15280.1p  transcript_id AT5G15280.1  protein_id AT5G15280.1p  transcript_id AT5G15280.1  
At5g15290	chr5:004967094	0.0	W/4967094-4967314,4967424-4967547,4967628-4967846	AT5G15290.1  CDS  gene_syn F8M21.180, F8M21_180  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane family protein  note integral membrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT1G14160.1); Has 277 Blast hits to 277 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 277; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G15290.1p  transcript_id AT5G15290.1  protein_id AT5G15290.1p  transcript_id AT5G15290.1  
At5g15300	chr5:004968384	0.0	C/4968384-4970030	AT5G15300.1  CDS  gene_syn F8M21.190, F8M21_190  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G29230.1); Has 13524 Blast hits to 5155 proteins in 151 species: Archae - 0; Bacteria - 10; Metazoa - 128; Fungi - 103; Plants - 12939; Viruses - 0; Other Eukaryotes - 344 (source: NCBI BLink).  protein_id AT5G15300.1p  transcript_id AT5G15300.1  protein_id AT5G15300.1p  transcript_id AT5G15300.1  
At5g15310	chr5:004974894	0.0	W/4974894-4975026,4975100-4975229,4975312-4975661,4975739-4976106	AT5G15310.1  CDS  gene_syn ATMIXTA, ATMYB16, F8M21.200, F8M21_200, MYB DOMAIN PROTEIN 16  gene ATMYB16  function Member of the R2R3 factor gene family.  go_process cell morphogenesis|GO:0000902|17376813|IMP  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ATMYB16 (MYB DOMAIN PROTEIN 16); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 16 (ATMYB16); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 9 processes; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB106 (myb domain protein 106); DNA binding / transcription factor (TAIR:AT3G01140.1); Has 6223 Blast hits to 5793 proteins in 351 species: Archae - 0; Bacteria - 0; Metazoa - 607; Fungi - 302; Plants - 3747; Viruses - 4; Other Eukaryotes - 1563 (source: NCBI BLink).  protein_id AT5G15310.1p  transcript_id AT5G15310.1  protein_id AT5G15310.1p  transcript_id AT5G15310.1  
At5g15310	chr5:004974894	0.0	W/4974894-4975026,4975100-4975229,4975312-4975661,4975772-4976106	AT5G15310.2  CDS  gene_syn ATMIXTA, ATMYB16, F8M21.200, F8M21_200, MYB DOMAIN PROTEIN 16  gene ATMYB16  function Member of the R2R3 factor gene family.  go_process cell morphogenesis|GO:0000902|17376813|IMP  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ATMYB16 (MYB DOMAIN PROTEIN 16); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 16 (ATMYB16); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 9 processes; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: MYB106 (myb domain protein 106); DNA binding / transcription factor (TAIR:AT3G01140.1); Has 6108 Blast hits to 5814 proteins in 351 species: Archae - 0; Bacteria - 0; Metazoa - 535; Fungi - 302; Plants - 3752; Viruses - 4; Other Eukaryotes - 1515 (source: NCBI BLink).  protein_id AT5G15310.2p  transcript_id AT5G15310.2  protein_id AT5G15310.2p  transcript_id AT5G15310.2  
At5g15320	chr5:004977647	0.0	W/4977647-4977694,4977800-4977856,4978611-4978658	AT5G15320.2  CDS  gene_syn F8M21.210, F8M21_210  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01130.1); Has 37 Blast hits to 37 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G15320.2p  transcript_id AT5G15320.2  protein_id AT5G15320.2p  transcript_id AT5G15320.2  
At5g15320	chr5:004977647	0.0	W/4977647-4977694,4977800-4977865,4978611-4978658	AT5G15320.1  CDS  gene_syn F8M21.210, F8M21_210  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01130.1); Has 37 Blast hits to 37 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G15320.1p  transcript_id AT5G15320.1  protein_id AT5G15320.1p  transcript_id AT5G15320.1  
At5g15330	chr5:004980595	0.0	W/4980595-4980930,4981346-4981502,4981580-4982043	AT5G15330.1  CDS  gene_syn ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, ATSPX4, F8M21.220, F8M21_220, SPX DOMAIN GENE 4, SPX4  gene SPX4  go_component cellular_component|GO:0005575||ND  go_process cellular response to phosphate starvation|GO:0016036|18315545|IEP  go_function molecular_function|GO:0003674||ND  product SPX4 (SPX DOMAIN GENE 4)  note SPX DOMAIN GENE 4 (SPX4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cellular response to phosphate starvation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: SPX2 (SPX DOMAIN GENE 2) (TAIR:AT2G26660.1); Has 673 Blast hits to 668 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 202; Fungi - 277; Plants - 160; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT5G15330.1p  transcript_id AT5G15330.1  protein_id AT5G15330.1p  transcript_id AT5G15330.1  
At5g15340	chr5:004982273	0.0	C/4982273-4984144	AT5G15340.1  CDS  gene_syn F8M21.230, F8M21_230  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G29760.1); Has 11051 Blast hits to 4618 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 30; Fungi - 11; Plants - 10846; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).  protein_id AT5G15340.1p  transcript_id AT5G15340.1  protein_id AT5G15340.1p  transcript_id AT5G15340.1  
At5g15350	chr5:004985980	0.0	C/4985980-4986154,4985184-4985527	AT5G15350.1  CDS  gene_syn F8M21.240, F8M21_240  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function copper ion binding|GO:0005507||ISS  product plastocyanin-like domain-containing protein  note plastocyanin-like domain-containing protein; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to plasma membrane, plasma membrane, vacuole, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: plastocyanin-like domain-containing protein (TAIR:AT4G12880.1); Has 768 Blast hits to 760 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 768; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G15350.1p  transcript_id AT5G15350.1  protein_id AT5G15350.1p  transcript_id AT5G15350.1  
At5g15360	chr5:004989135	0.0	C/4989135-4989182,4988717-4988797,4988528-4988628,4988267-4988397,4987986-4988147,4987788-4987905,4987437-4987557	AT5G15360.1  CDS  gene_syn F8M21.250, F8M21_250  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G15360.1p  transcript_id AT5G15360.1  protein_id AT5G15360.1p  transcript_id AT5G15360.1  
At5g15380	chr5:004991347	0.0	W/4991347-4991388,4991449-4991659,4991742-4991791,4991895-4991994,4992072-4992118,4992201-4992296,4992441-4992540,4992679-4992776,4993617-4994309,4994389-4994826	AT5G15380.1  CDS  gene_syn DRM1, F8M21.270, F8M21_270, domains rearranged methylase 1  gene DRM1  function Encodes methyltransferase involved in the de novo DNA methylation and maintenance of asymmetric methylation of DNA sequences.  go_component cellular_component|GO:0005575||ND  go_process DNA methylation|GO:0006306|12121623|IMP  go_process methylation-dependent chromatin silencing|GO:0006346|12121623|IMP  go_process histone H3-K9 methylation|GO:0051567|17239600|IGI  go_function DNA (cytosine-5-)-methyltransferase activity|GO:0003886|12151602|IMP  product DRM1 (domains rearranged methylase 1); DNA (cytosine-5-)-methyltransferase  note domains rearranged methylase 1 (DRM1); FUNCTIONS IN: DNA (cytosine-5-)-methyltransferase activity; INVOLVED IN: methylation-dependent chromatin silencing, histone H3-K9 methylation, DNA methylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: DRM2 (DOMAINS REARRANGED METHYLTRANSFERASE 2); N-methyltransferase (TAIR:AT5G14620.1); Has 516 Blast hits to 430 proteins in 75 species: Archae - 0; Bacteria - 62; Metazoa - 252; Fungi - 0; Plants - 92; Viruses - 12; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT5G15380.1p  transcript_id AT5G15380.1  protein_id AT5G15380.1p  transcript_id AT5G15380.1  
At5g15390	chr5:004995333	0.0	W/4995333-4995471,4995575-4996013,4996528-4996666,4996760-4996821,4996895-4997033,4997121-4997255	AT5G15390.1  CDS  gene_syn T20K14.1  go_component chloroplast|GO:0009507||IEA  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_function RNA methyltransferase activity|GO:0008173||IEA  go_process RNA processing|GO:0006396||ISS  go_function RNA binding|GO:0003723||ISS  go_function RNA methyltransferase activity|GO:0008173||ISS  product tRNA/rRNA methyltransferase (SpoU) family protein  note tRNA/rRNA methyltransferase (SpoU) family protein; FUNCTIONS IN: RNA binding, RNA methyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537); BEST Arabidopsis thaliana protein match is: tRNA/rRNA methyltransferase (SpoU) family protein (TAIR:AT2G19870.1); Has 6929 Blast hits to 6927 proteins in 1354 species: Archae - 6; Bacteria - 4609; Metazoa - 116; Fungi - 48; Plants - 75; Viruses - 0; Other Eukaryotes - 2075 (source: NCBI BLink).  protein_id AT5G15390.1p  transcript_id AT5G15390.1  protein_id AT5G15390.1p  transcript_id AT5G15390.1  
At5g15400	chr5:005002048	0.0	C/5002048-5002907,5001372-5001576,5001079-5001230,5000718-5000991,5000292-5000444,4999989-5000192,4999795-4999907,4999567-4999684,4999322-4999411,4999038-4999241,4998863-4998958,4998657-4998779,4998482-4998574,4998233-4998397,4998038-4998127,4997764-4997940	AT5G15400.1  CDS  gene_syn T20K14.10, T20K14_10  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  product U-box domain-containing protein  note U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); Has 761 Blast hits to 744 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 440; Fungi - 133; Plants - 86; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).  protein_id AT5G15400.1p  transcript_id AT5G15400.1  protein_id AT5G15400.1p  transcript_id AT5G15400.1  
At5g15410	chr5:005005687	0.0	C/5005687-5005986,5005303-5005518,5004797-5005116,5004588-5004699,5004259-5004495,5004086-5004172,5003460-5003969	AT5G15410.2  CDS  gene_syn ARABIDOPSIS THALIANA CYCLIC NUCLEOTIDE GATED CHANNEL 2, ATCNGC2, CNGC2, CYCLIC NUCLEOTIDE GATED CHANNEL 2, DEFENSE NO DEATH 1, DND1  gene DND1  function  defense, no death  gene (DND1) encodes a mutated cyclic nucleotide-gated cation channel; Same as CNGC2 (article ID 229): Cyclic nucleotide gated channel, activated by cAMP, conducts K+ and other monovalent cations but excludes Na+, does not contain the GYG amino acid sequence found in other channels with this conductivity profile. Conducts Ca2+ into cells which is linked to the generation of NO and the NO signaling pathway involved in the innate immune response to pathogens.  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process defense response|GO:0006952|10900264|TAS  go_process nitric oxide mediated signal transduction|GO:0007263|17384171|IMP  go_process plant-type hypersensitive response|GO:0009626|10900264|IMP  go_function intracellular cyclic nucleotide activated cation channel activity|GO:0005221|10900264|IMP  go_function intracellular cAMP activated cation channel activity|GO:0005222|11842144|IDA  go_function inward rectifier potassium channel activity|GO:0005242|10341447|IGI  go_function cation channel activity|GO:0005261||ISS  go_function calcium channel activity|GO:0005262|17384171|IMP  go_function calmodulin binding|GO:0005516|11782485|TAS  go_function cyclic nucleotide binding|GO:0030551||ISS  product DND1 (DEFENSE NO DEATH 1); calcium channel/ calmodulin binding / cation channel/ cyclic nucleotide binding / intracellular cAMP activated cation channel/ intracellular cyclic nucleotide activated cation channel/ inward rectifier potassium channel  note DEFENSE NO DEATH 1 (DND1); FUNCTIONS IN: in 7 functions; INVOLVED IN: nitric oxide mediated signal transduction, plant-type hypersensitive response, defense response; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4); calmodulin binding / cation channel/ cation transmembrane transporter/ cyclic nucleotide binding (TAIR:AT5G54250.2); Has 2275 Blast hits to 2228 proteins in 206 species: Archae - 0; Bacteria - 30; Metazoa - 1205; Fungi - 11; Plants - 631; Viruses - 0; Other Eukaryotes - 398 (source: NCBI BLink).  protein_id AT5G15410.2p  transcript_id AT5G15410.2  protein_id AT5G15410.2p  transcript_id AT5G15410.2  
At5g15410	chr5:005006735	0.0	C/5006735-5006763,5005687-5006356,5005303-5005518,5004797-5005116,5004588-5004699,5004259-5004495,5004086-5004172,5003460-5003969	AT5G15410.1  CDS  gene_syn ARABIDOPSIS THALIANA CYCLIC NUCLEOTIDE GATED CHANNEL 2, ATCNGC2, CNGC2, CYCLIC NUCLEOTIDE GATED CHANNEL 2, DEFENSE NO DEATH 1, DND1  gene DND1  function  defense, no death  gene (DND1) encodes a mutated cyclic nucleotide-gated cation channel; Same as CNGC2 (article ID 229): Cyclic nucleotide gated channel, activated by cAMP, conducts K+ and other monovalent cations but excludes Na+, does not contain the GYG amino acid sequence found in other channels with this conductivity profile. Conducts Ca2+ into cells which is linked to the generation of NO and the NO signaling pathway involved in the innate immune response to pathogens.  go_component membrane|GO:0016020||IEA  go_process defense response|GO:0006952|10900264|TAS  go_process nitric oxide mediated signal transduction|GO:0007263|17384171|IMP  go_process plant-type hypersensitive response|GO:0009626|10900264|IMP  go_function intracellular cyclic nucleotide activated cation channel activity|GO:0005221|10900264|IMP  go_function intracellular cAMP activated cation channel activity|GO:0005222|11842144|IDA  go_function inward rectifier potassium channel activity|GO:0005242|10341447|IGI  go_function cation channel activity|GO:0005261||ISS  go_function calcium channel activity|GO:0005262|17384171|IMP  go_function calmodulin binding|GO:0005516|11782485|TAS  go_function cyclic nucleotide binding|GO:0030551||ISS  product DND1 (DEFENSE NO DEATH 1); calcium channel/ calmodulin binding / cation channel/ cyclic nucleotide binding / intracellular cAMP activated cation channel/ intracellular cyclic nucleotide activated cation channel/ inward rectifier potassium channel  note DEFENSE NO DEATH 1 (DND1); FUNCTIONS IN: in 7 functions; INVOLVED IN: nitric oxide mediated signal transduction, plant-type hypersensitive response, defense response; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4); calmodulin binding / cation channel/ cation transmembrane transporter/ cyclic nucleotide binding (TAIR:AT5G54250.2); Has 2275 Blast hits to 2228 proteins in 206 species: Archae - 0; Bacteria - 30; Metazoa - 1205; Fungi - 11; Plants - 631; Viruses - 0; Other Eukaryotes - 398 (source: NCBI BLink).  protein_id AT5G15410.1p  transcript_id AT5G15410.1  protein_id AT5G15410.1p  transcript_id AT5G15410.1  
At5g15420	chr5:005008934	0.0	C/5008934-5008964,5007951-5008399	AT5G15420.1  CDS  gene_syn T20K14.30, T20K14_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, LP.12 twelve leaves visible; Has 17 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT5G15420.1p  transcript_id AT5G15420.1  protein_id AT5G15420.1p  transcript_id AT5G15420.1  
At5g15430	chr5:005010180	0.0	W/5010180-5011616	AT5G15430.1  CDS  gene_syn T20K14.40, T20K14_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product calmodulin-binding protein-related  note calmodulin-binding protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Calmodulin-binding, plant (InterPro:IPR012417); BEST Arabidopsis thaliana protein match is: calmodulin-binding protein-related (TAIR:AT5G39380.1); Has 2859 Blast hits to 2391 proteins in 227 species: Archae - 2; Bacteria - 66; Metazoa - 1145; Fungi - 229; Plants - 167; Viruses - 17; Other Eukaryotes - 1233 (source: NCBI BLink).  protein_id AT5G15430.1p  transcript_id AT5G15430.1  protein_id AT5G15430.1p  transcript_id AT5G15430.1  
At5g15440	chr5:005013158	0.0	W/5013158-5013932,5014025-5014131	AT5G15440.1  CDS  gene_syn EDL1, EID1-like 1, T20K14.50, T20K14_50  gene EDL1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product EDL1 (EID1-like 1)  note EID1-like 1 (EDL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: EDL2 (EID1-like 2) (TAIR:AT5G39360.1); Has 78 Blast hits to 66 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G15440.1p  transcript_id AT5G15440.1  protein_id AT5G15440.1p  transcript_id AT5G15440.1  
At5g15450	chr5:005018028	0.0	C/5018028-5018255,5017704-5017922,5017386-5017623,5017106-5017301,5016971-5017025,5016732-5016882,5016342-5016650,5015068-5016257,5014399-5014719	AT5G15450.1  CDS  gene_syn ALBINO AND PALE GREEN 6, APG6, CASEIN LYTIC PROTEINASE B-P, CASEIN LYTIC PROTEINASE B3, CLPB-P, CLPB3, T20K14.60, T20K14_60  gene CLPB3  function Encodes a chloroplast-targeted Hsp101 homologue. Functions as a molecular chaperone involved in plastid differentiation mediating internal thylakoid membrane formation and conferring thermotolerance to chloroplasts during heat stress. APG6 is constitutively expressed in the root tips, the organ boundary region, the reproductive tissues of mature plants where plastids exist as proplastids, and slightly in the stems and leaves. APG6 expression is upregulated in response to heat shock in various organs, but not in response to other abiotic stresses. Apg6 mutants have a pale-green phenotype.  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastid stroma|GO:0009532|14593120|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component chloroplast|GO:0009507|16995899|IDA  go_process response to heat|GO:0009408|10889261|ISS  go_process response to heat|GO:0009408|16995899|IEP  go_process chloroplast organization|GO:0009658|16995899|IMP  go_function ATP binding|GO:0005524||ISS  go_function ATPase activity|GO:0016887||ISS  product CLPB3 (CASEIN LYTIC PROTEINASE B3); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding  note CASEIN LYTIC PROTEINASE B3 (CLPB3); FUNCTIONS IN: protein binding, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: chloroplast organization, response to heat; LOCATED IN: plastid stroma, chloroplast, chloroplast stroma; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase associated with various cellular activities, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpB (InterPro:IPR017730), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: CLPB4 (CASEIN LYTIC PROTEINASE B4); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding (TAIR:AT2G25140.1); Has 20529 Blast hits to 18338 proteins in 1821 species: Archae - 248; Bacteria - 10461; Metazoa - 1272; Fungi - 429; Plants - 335; Viruses - 6; Other Eukaryotes - 7778 (source: NCBI BLink).  protein_id AT5G15450.1p  transcript_id AT5G15450.1  protein_id AT5G15450.1p  transcript_id AT5G15450.1  
At5g15460	chr5:005019973	0.0	C/5019973-5020105,5019144-5019308,5018947-5019023	AT5G15460.1  CDS  gene_syn MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 2, MUB2, T20K14.70, T20K14_70  gene MUB2  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product MUB2 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 2)  note MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 2 (MUB2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Membrane-anchored ubiquitin-fold protein, HCG-1 (InterPro:IPR017000), Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: MUB1 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 1 PRECURSOR) (TAIR:AT3G01050.1); Has 105 Blast hits to 105 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 9; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G15460.1p  transcript_id AT5G15460.1  protein_id AT5G15460.1p  transcript_id AT5G15460.1  
At5g15460	chr5:005019973	0.0	C/5019973-5020105,5019144-5019308,5018947-5019023	AT5G15460.2  CDS  gene_syn MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 2, MUB2, T20K14.70, T20K14_70  gene MUB2  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product MUB2 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 2)  note MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 2 (MUB2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Membrane-anchored ubiquitin-fold protein, HCG-1 (InterPro:IPR017000), Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: MUB1 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 1 PRECURSOR) (TAIR:AT3G01050.1); Has 105 Blast hits to 105 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 9; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G15460.2p  transcript_id AT5G15460.2  protein_id AT5G15460.2p  transcript_id AT5G15460.2  
At5g15470	chr5:005023958	0.0	C/5023958-5024168,5023281-5023336,5023044-5023199,5022203-5022793,5021812-5022114,5021433-5021714	AT5G15470.1  CDS  gene_syn GAUT14, Galacturonosyltransferase 14, T20K14.80, T20K14_80  gene GAUT14  function Encodes a protein with putative galacturonosyltransferase activity.  go_component cellular_component|GO:0005575||ND  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS  product GAUT14 (Galacturonosyltransferase 14); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note Galacturonosyltransferase 14 (GAUT14); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: GAUT13 (Galacturonosyltransferase 13); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT3G01040.2); Has 886 Blast hits to 880 proteins in 170 species: Archae - 0; Bacteria - 296; Metazoa - 127; Fungi - 0; Plants - 432; Viruses - 2; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT5G15470.1p  transcript_id AT5G15470.1  protein_id AT5G15470.1p  transcript_id AT5G15470.1  
At5g15480	chr5:005025952	0.0	C/5025952-5027160	AT5G15480.1  CDS  gene_syn T20K14.90, T20K14_90  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT3G01030.1); Has 90 Blast hits to 89 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G15480.1p  transcript_id AT5G15480.1  protein_id AT5G15480.1p  transcript_id AT5G15480.1  
At5g15490	chr5:005027872	0.0	C/5027872-5029314	AT5G15490.1  CDS  gene_syn T20K14.100, T20K14_100  go_component cell wall|GO:0005618|16287169|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_function coenzyme binding|GO:0050662||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_function UDP-glucose 6-dehydrogenase activity|GO:0003979||ISS  product UDP-glucose 6-dehydrogenase, putative  note UDP-glucose 6-dehydrogenase, putative; FUNCTIONS IN: in 7 functions; INVOLVED IN: metabolic process; LOCATED IN: cytosol, cell wall, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucose/GDP-mannose dehydrogenase, N-terminal (InterPro:IPR001732), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding (InterPro:IPR014028), UDP-glucose/GDP-mannose dehydrogenase, C-terminal (InterPro:IPR014027), NAD(P)-binding (InterPro:IPR016040), UDP-glucose/GDP-mannose dehydrogenase, dimerisation (InterPro:IPR014026), Nucleotide sugar dehydrogenase (InterPro:IPR017476); BEST Arabidopsis thaliana protein match is: UDP-glucose 6-dehydrogenase, putative (TAIR:AT3G29360.2); Has 9893 Blast hits to 9876 proteins in 1240 species: Archae - 198; Bacteria - 3913; Metazoa - 184; Fungi - 72; Plants - 117; Viruses - 14; Other Eukaryotes - 5395 (source: NCBI BLink).  protein_id AT5G15490.1p  transcript_id AT5G15490.1  protein_id AT5G15490.1p  transcript_id AT5G15490.1  
At5g15500	chr5:005031791	0.0	C/5031791-5032846	AT5G15500.1  CDS  gene_syn T20K14.110, T20K14_110  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT4G10720.1); Has 4316 Blast hits to 2763 proteins in 151 species: Archae - 2; Bacteria - 127; Metazoa - 826; Fungi - 106; Plants - 410; Viruses - 22; Other Eukaryotes - 2823 (source: NCBI BLink).  protein_id AT5G15500.1p  transcript_id AT5G15500.1  protein_id AT5G15500.1p  transcript_id AT5G15500.1  
At5g15500	chr5:005033128	0.0	C/5033128-5033443,5031791-5032848	AT5G15500.2  CDS  gene_syn T20K14.110, T20K14_110  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT4G10720.1); Has 15291 Blast hits to 8061 proteins in 322 species: Archae - 13; Bacteria - 757; Metazoa - 8515; Fungi - 631; Plants - 930; Viruses - 51; Other Eukaryotes - 4394 (source: NCBI BLink).  protein_id AT5G15500.2p  transcript_id AT5G15500.2  protein_id AT5G15500.2p  transcript_id AT5G15500.2  
At5g15510	chr5:005034120	0.0	W/5034120-5034964,5035047-5035092,5035205-5035297,5035393-5035512,5035633-5035731,5036030-5036089,5036176-5036270,5036479-5036614	AT5G15510.1  CDS  gene_syn T20K14.120, T20K14_120  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Targeting for Xklp2 (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01015.1); Has 992 Blast hits to 819 proteins in 107 species: Archae - 0; Bacteria - 11; Metazoa - 477; Fungi - 40; Plants - 169; Viruses - 3; Other Eukaryotes - 292 (source: NCBI BLink).  protein_id AT5G15510.1p  transcript_id AT5G15510.1  protein_id AT5G15510.1p  transcript_id AT5G15510.1  
At5g15520	chr5:005038053	0.0	C/5038053-5038136,5037677-5037767,5037409-5037592,5037242-5037314	AT5G15520.1  CDS  gene_syn T20K14.130, T20K14_130  go_component nucleolus|GO:0005730|15496452|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S19 (RPS19B)  note 40S ribosomal protein S19 (RPS19B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome, nucleolus, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S19e, conserved site (InterPro:IPR018277), Ribosomal protein S19e (InterPro:IPR001266); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S19 (RPS19A) (TAIR:AT3G02080.1); Has 879 Blast hits to 879 proteins in 288 species: Archae - 134; Bacteria - 1; Metazoa - 345; Fungi - 97; Plants - 125; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).  protein_id AT5G15520.1p  transcript_id AT5G15520.1  protein_id AT5G15520.1p  transcript_id AT5G15520.1  
At5g15530	chr5:005038955	0.0	W/5038955-5039086,5039280-5039321,5039419-5039537,5039630-5039942,5040088-5040159,5040262-5040327,5040414-5040437	AT5G15530.1  CDS  gene_syn BCCP2, BIOTIN CARBOXYL CARRIER PROTEIN 2, BIOTIN CARBOXYL-CARRIER PROTEIN, CAC1-B, T20K14.140, T20K14_140  gene BCCP2  function biotin carboxyl carrier protein isoform 2 (BCCP2) mRNA,  go_process fatty acid biosynthetic process|GO:0006633||IEA  go_component chloroplast|GO:0009507|11299381|IDA  go_process fatty acid biosynthetic process|GO:0006633||ISS  go_function biotin binding|GO:0009374|11299381|IDA  product BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2); biotin binding  note BIOTIN CARBOXYL CARRIER PROTEIN 2 (BCCP2); FUNCTIONS IN: biotin binding; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Biotin-binding site (InterPro:IPR001882), Single hybrid motif (InterPro:IPR011053), Acetyl-CoA biotin carboxyl carrier (InterPro:IPR001249), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1); acetyl-CoA carboxylase/ biotin binding (TAIR:AT5G16390.1); Has 6909 Blast hits to 6509 proteins in 1276 species: Archae - 71; Bacteria - 3551; Metazoa - 225; Fungi - 71; Plants - 424; Viruses - 214; Other Eukaryotes - 2353 (source: NCBI BLink).  protein_id AT5G15530.1p  transcript_id AT5G15530.1  protein_id AT5G15530.1p  transcript_id AT5G15530.1  
At5g15540	chr5:005057143	0.0	C/5057143-5057411,5056537-5056646,5055962-5056209,5055805-5055892,5055468-5055721,5055070-5055177,5054844-5054955,5054514-5054613,5054254-5054440,5053711-5054142,5053112-5053629,5052830-5053040,5052708-5052758,5052439-5052597,5052190-5052357,5051799-5052098,5051569-5051721,5051212-5051381,5050936-5051044,5050320-5050481,5050133-5050237,5049797-5050030,5049579-5049712,5049196-5049492,5048708-5049119,5048429-5048521,5048216-5048341,5047887-5048117	AT5G15540.1  CDS  gene_syn ARABIDOPSIS THALIANA SISTER-CHROMATID COHESION 2, ATSCC2, EMB2773, EMBRYO DEFECTIVE 2773, SCC2, SISTER-CHROMATID COHESION 2, T20K14.150, T20K14_150  gene EMB2773  function Encodes Adherin SCC2. Essential for viability. Required for normal seed development. Plays a role in the establishment of sister-chromatid cohesion and chromosome organization during meiosis.  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process sister chromatid cohesion|GO:0007062|19228337|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|19228337|IMP  go_process centromere complex assembly|GO:0034508|19228337|IMP  product EMB2773 (EMBRYO DEFECTIVE 2773); binding / protein binding / zinc ion binding  note EMBRYO DEFECTIVE 2773 (EMB2773); FUNCTIONS IN: protein binding, binding, zinc ion binding; INVOLVED IN: embryonic development ending in seed dormancy, centromere complex assembly, sister chromatid cohesion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Armadillo-like helical (InterPro:IPR011989), Zinc finger, PHD-type (InterPro:IPR001965), Armadillo-type fold (InterPro:IPR016024), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); Has 380 Blast hits to 267 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 176; Fungi - 135; Plants - 43; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT5G15540.1p  transcript_id AT5G15540.1  protein_id AT5G15540.1p  transcript_id AT5G15540.1  
At5g15546	chr5:005058241	0.0	W/5058241-5058568	AT5G15546.1  pseudogenic_transcript  pseudo  function pseudogene of expansin precursor  
At5g15550	chr5:005061847	0.0	C/5061847-5062003,5061504-5061604,5061283-5061389,5060912-5060947,5060712-5060797,5060520-5060578,5060330-5060440,5060096-5060221,5059821-5059964,5059579-5059687,5059315-5059487	AT5G15550.2  CDS  gene_syn T20K14.160, T20K14_160  go_component nucleolus|GO:0005730|15496452|IDA  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus, CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), NLE (InterPro:IPR012972), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C); nucleotide binding (TAIR:AT3G18130.1); Has 22251 Blast hits to 13044 proteins in 488 species: Archae - 34; Bacteria - 3292; Metazoa - 9312; Fungi - 4694; Plants - 2022; Viruses - 0; Other Eukaryotes - 2897 (source: NCBI BLink).  protein_id AT5G15550.2p  transcript_id AT5G15550.2  protein_id AT5G15550.2p  transcript_id AT5G15550.2  
At5g15550	chr5:005061847	0.0	C/5061847-5062003,5061504-5061604,5061283-5061389,5060912-5060947,5060712-5060797,5060520-5060578,5060330-5060440,5060096-5060221,5059821-5059964,5059579-5059687,5059351-5059487,5059231-5059266,5059051-5059143	AT5G15550.1  CDS  gene_syn T20K14.160, T20K14_160  go_component nucleolus|GO:0005730|15496452|IDA  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus, CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), NLE (InterPro:IPR012972), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT4G02730.1); Has 24919 Blast hits to 14751 proteins in 514 species: Archae - 36; Bacteria - 3358; Metazoa - 10677; Fungi - 5278; Plants - 2324; Viruses - 0; Other Eukaryotes - 3246 (source: NCBI BLink).  protein_id AT5G15550.1p  transcript_id AT5G15550.1  protein_id AT5G15550.1p  transcript_id AT5G15550.1  
At5g15560	chr5:005064051	0.0	W/5064051-5064424,5064544-5064889	AT5G15560.1  CDS  gene_syn T20K14.170, T20K14_170  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: pollen tube; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02125.1); Has 224 Blast hits to 210 proteins in 46 species: Archae - 0; Bacteria - 6; Metazoa - 52; Fungi - 16; Plants - 14; Viruses - 8; Other Eukaryotes - 128 (source: NCBI BLink).  protein_id AT5G15560.1p  transcript_id AT5G15560.1  protein_id AT5G15560.1p  transcript_id AT5G15560.1  
At5g15570	chr5:005066851	0.0	W/5066851-5067996	AT5G15570.1  CDS  gene_syn T20K14.180, T20K14_180  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain transcription factor (InterPro:IPR006565); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT3G02160.1); Has 143 Blast hits to 143 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 85; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G15570.1p  transcript_id AT5G15570.1  protein_id AT5G15570.1p  transcript_id AT5G15570.1  
At5g15580	chr5:005071780	0.0	C/5071780-5071930,5071431-5071486,5069696-5071348,5069464-5069605,5068495-5069276	AT5G15580.1  CDS  gene_syn LNG1, LONGIFOLIA1, T20K14.190, T20K14_190  gene LNG1  function Encodes LONGIFOLIA1 (LNG1). Regulates leaf morphology by promoting cell expansion in the leaf-length direction. The LNG1 homologue LNG2 (At3g02170) has similar function.  go_component nucleus|GO:0005634|17038516|IDA  go_component cytosol|GO:0005829|17038516|IDA  go_process monopolar cell growth|GO:0042814|17038516|IMP  go_function molecular_function|GO:0003674||ND  product LNG1 (LONGIFOLIA1)  note LONGIFOLIA1 (LNG1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: monopolar cell growth; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: LNG2 (LONGIFOLIA2) (TAIR:AT3G02170.1); Has 1731 Blast hits to 854 proteins in 160 species: Archae - 0; Bacteria - 74; Metazoa - 606; Fungi - 135; Plants - 118; Viruses - 11; Other Eukaryotes - 787 (source: NCBI BLink).  protein_id AT5G15580.1p  transcript_id AT5G15580.1  protein_id AT5G15580.1p  transcript_id AT5G15580.1  
At5g15581	chr5:005071829	0.0	W/5071829-5072140	AT5G15581.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf apex; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G15581.1p  transcript_id AT5G15581.1  protein_id AT5G15581.1p  transcript_id AT5G15581.1  
At5g15600	chr5:005078405	0.0	W/5078405-5078695,5078771-5078863	AT5G15600.1  CDS  gene_syn SP1L4, SPIRAL1-LIKE4, T20K14.210, T20K14_210  gene SP1L4  function SPIRAL1-LIKE4 belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SP1L4 (SPIRAL1-LIKE4)  note SPIRAL1-LIKE4 (SP1L4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: SP1L3 (SPIRAL 1-LIKE3) (TAIR:AT3G02180.2); Has 181 Blast hits to 169 proteins in 38 species: Archae - 0; Bacteria - 4; Metazoa - 7; Fungi - 4; Plants - 98; Viruses - 2; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT5G15600.1p  transcript_id AT5G15600.1  protein_id AT5G15600.1p  transcript_id AT5G15600.1  
At5g15610	chr5:005079579	0.0	W/5079579-5079671,5079972-5080101,5080198-5080336,5080448-5080660,5080744-5080882,5081040-5081190,5081290-5081399,5081490-5081587,5081675-5081744,5081831-5081929	AT5G15610.2  CDS  gene_syn T20K14.220, T20K14_220  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product proteasome family protein  note proteasome family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component region PCI (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: proteasome family protein (TAIR:AT3G02200.2); Has 480 Blast hits to 480 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 246; Fungi - 119; Plants - 46; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT5G15610.2p  transcript_id AT5G15610.2  protein_id AT5G15610.2p  transcript_id AT5G15610.2  
At5g15610	chr5:005079579	0.0	W/5079579-5079671,5079972-5080101,5080198-5080336,5080448-5080660,5080744-5080882,5081040-5081190,5081290-5081399,5081490-5081744,5081831-5081929	AT5G15610.1  CDS  gene_syn T20K14.220, T20K14_220  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product proteasome family protein  note proteasome family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component region PCI (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: proteasome family protein (TAIR:AT3G02200.2); Has 290 Blast hits to 290 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 140; Fungi - 68; Plants - 36; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT5G15610.1p  transcript_id AT5G15610.1  protein_id AT5G15610.1p  transcript_id AT5G15610.1  
At5g15620	chr5:005082465	0.0	W/5082465-5083346,5083459-5083602,5083695-5083991	AT5G15620.1  CDS  gene_syn T20K14.230, T20K14_230  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G62430.1); Has 650 Blast hits to 632 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 650; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G15620.1p  transcript_id AT5G15620.1  protein_id AT5G15620.1p  transcript_id AT5G15620.1  
At5g15630	chr5:005084842	0.0	W/5084842-5084896,5084971-5085050,5085141-5085597,5085675-5085822,5085902-5086179,5086268-5086545	AT5G15630.1  CDS  gene_syn COBL4, COBRA-LIKE4, F14F8.10, F14F8_10, IRX6  gene IRX6  function Encodes a member of the COBRA family, similar to phytochelatin synthetase. Involved in secondary cell wall biosynthesis. Mutants make smaller plants with reduced levels of cellulose and cell wall sugars.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12376623|TAS  go_component anchored to membrane|GO:0031225|12805591|TAS  go_process secondary cell wall biogenesis|GO:0009834|15980264|IMP  product IRX6  note IRX6; INVOLVED IN: secondary cell wall biogenesis; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918), COBRA-like (InterPro:IPR017391); BEST Arabidopsis thaliana protein match is: COB (COBRA) (TAIR:AT5G60920.1); Has 245 Blast hits to 241 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 245; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G15630.1p  transcript_id AT5G15630.1  protein_id AT5G15630.1p  transcript_id AT5G15630.1  
At5g15640	chr5:005087590	0.0	W/5087590-5087651,5088222-5088603,5088707-5088903,5089047-5089194,5089367-5089523,5089652-5089677	AT5G15640.1  CDS  gene_syn F14F8.20, F14F8_20  go_process transport|GO:0006810||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function binding|GO:0005488||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrion, mitochondrial inner membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: mitochondrial substrate carrier family protein (TAIR:AT1G72820.1); Has 16366 Blast hits to 9494 proteins in 331 species: Archae - 0; Bacteria - 0; Metazoa - 7934; Fungi - 4673; Plants - 2394; Viruses - 0; Other Eukaryotes - 1365 (source: NCBI BLink).  protein_id AT5G15640.1p  transcript_id AT5G15640.1  protein_id AT5G15640.1p  transcript_id AT5G15640.1  
At5g15650	chr5:005092203	0.0	W/5092203-5092544,5093158-5093408,5093497-5093665,5093773-5094093	AT5G15650.1  CDS  gene_syn ATRGP2, F14F8.30, F14F8_30, REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2, RGP2  gene RGP2  function Reversibly Glycosylated Polypeptide-2  go_component cell wall|GO:0005618|16287169|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function transferase activity, transferring hexosyl groups|GO:0016758||IEA  go_component membrane|GO:0016020|9536051|ISS  product RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2); transferase, transferring hexosyl groups  note REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2 (RGP2); FUNCTIONS IN: transferase activity, transferring hexosyl groups; INVOLVED IN: response to cadmium ion, response to salt stress; LOCATED IN: cytosolic ribosome, cell wall, membrane; EXPRESSED IN: male gametophyte, guard cell, root, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Alpha-1,4-glucan-protein synthase, UDP-forming (InterPro:IPR004901); BEST Arabidopsis thaliana protein match is: RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1); cellulose synthase (UDP-forming) (TAIR:AT3G02230.1); Has 146 Blast hits to 143 proteins in 32 species: Archae - 14; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 123; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G15650.1p  transcript_id AT5G15650.1  protein_id AT5G15650.1p  transcript_id AT5G15650.1  
At5g15660	chr5:005095652	0.0	W/5095652-5096797,5096871-5097041	AT5G15660.1  CDS  gene_syn F14F8.40, F14F8_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G26510.1); Has 886 Blast hits to 864 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 884; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G15660.1p  transcript_id AT5G15660.1  protein_id AT5G15660.1p  transcript_id AT5G15660.1  
At5g15670	chr5:005099595	0.0	W/5099595-5099841,5100010-5100407	AT5G15670.1  CDS  gene_syn F14F8.50, F14F8_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G15660.1); Has 452 Blast hits to 378 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 452; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G15670.1p  transcript_id AT5G15670.1  protein_id AT5G15670.1p  transcript_id AT5G15670.1  
At5g15680	chr5:005110698	0.0	C/5110698-5110793,5110298-5110416,5109942-5109987,5109655-5109727,5109512-5109569,5109287-5109382,5109002-5109119,5108668-5108934,5108486-5108587,5107936-5108293,5107733-5107846,5106925-5107556,5106602-5106798,5106052-5106274,5105776-5105895,5104534-5105310,5101188-5104253	AT5G15680.1  CDS  gene_syn F14F8.60, F14F8_60  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 628 Blast hits to 302 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 339; Fungi - 243; Plants - 33; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT5G15680.1p  transcript_id AT5G15680.1  protein_id AT5G15680.1p  transcript_id AT5G15680.1  
At5g15690	chr5:005114238	0.0	C/5114238-5114402,5113823-5114167	AT5G15690.1  CDS  gene_syn F14F8.70, F14F8_70  go_process response to cadmium ion|GO:0046686|16502469|IEP  product unknown protein  note INVOLVED IN: response to cadmium ion; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: MED21 (MEDIATOR 21) (TAIR:AT4G04780.2); Has 53 Blast hits to 53 proteins in 6 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 4; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G15690.1p  transcript_id AT5G15690.1  protein_id AT5G15690.1p  transcript_id AT5G15690.1  
At5g15700	chr5:005120725	0.0	C/5120725-5121609,5120061-5120270,5119831-5119961,5119674-5119740,5119354-5119412,5118935-5119052,5118736-5118849,5118455-5118586,5117961-5118377,5117771-5117821,5117608-5117678,5117434-5117518,5117000-5117152,5116731-5116805,5116565-5116654,5116425-5116472,5116204-5116318,5115995-5116098,5115793-5115903	AT5G15700.1  CDS  gene_syn F14F8.80, F14F8_80  go_process transcription|GO:0006350||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_process transcription|GO:0006350||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product DNA-directed RNA polymerase (RPOT2)  note DNA-directed RNA polymerase (RPOT2); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, bacteriophage type (InterPro:IPR002092); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase, mitochondrial (RPOMT) (TAIR:AT1G68990.1); Has 1079 Blast hits to 1064 proteins in 245 species: Archae - 0; Bacteria - 22; Metazoa - 122; Fungi - 163; Plants - 126; Viruses - 102; Other Eukaryotes - 544 (source: NCBI BLink).  protein_id AT5G15700.1p  transcript_id AT5G15700.1  protein_id AT5G15700.1p  transcript_id AT5G15700.1  
At5g15710	chr5:005122791	0.0	W/5122791-5124137	AT5G15710.1  CDS  gene_syn F14F8.90, F14F8_90  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), F-box associated type 1 (InterPro:IPR017451), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: UFO (UNUSUAL FLORAL ORGANS); transcription factor binding / ubiquitin-protein ligase (TAIR:AT1G30950.1); Has 767 Blast hits to 766 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 767; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G15710.1p  transcript_id AT5G15710.1  protein_id AT5G15710.1p  transcript_id AT5G15710.1  
At5g15720	chr5:005125918	0.0	C/5125918-5126155,5125711-5125838,5125369-5125617,5124988-5125246,5124684-5124904	AT5G15720.1  CDS  gene_syn F14F8.100, F14F8_100, GLIP7  gene GLIP7  function Contains lipase signature motif and GDSL domain.  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298|16126835|ISS  product GLIP7; carboxylesterase/ lipase  note GLIP7; FUNCTIONS IN: lipase activity, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT1G29670.1); Has 1901 Blast hits to 1886 proteins in 204 species: Archae - 0; Bacteria - 309; Metazoa - 1; Fungi - 20; Plants - 1554; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT5G15720.1p  transcript_id AT5G15720.1  protein_id AT5G15720.1p  transcript_id AT5G15720.1  
At5g15725	chr5:005127485	0.0	W/5127485-5127563,5127831-5127868,5128051-5128221	AT5G15725.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G15725.1p  transcript_id AT5G15725.1  protein_id AT5G15725.1p  transcript_id AT5G15725.1  
At5g15730	chr5:005131284	0.0	W/5131284-5131603,5131683-5131836,5131915-5132044,5132125-5132282,5132372-5132575,5132702-5133046	AT5G15730.2  CDS  gene_syn F14F8.110, F14F8_110  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product serine/threonine protein kinase, putative  note serine/threonine protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G54590.2); Has 85200 Blast hits to 84239 proteins in 3312 species: Archae - 48; Bacteria - 7076; Metazoa - 38106; Fungi - 6592; Plants - 18568; Viruses - 406; Other Eukaryotes - 14404 (source: NCBI BLink).  protein_id AT5G15730.2p  transcript_id AT5G15730.2  protein_id AT5G15730.2p  transcript_id AT5G15730.2  
At5g15730	chr5:005131284	0.0	W/5131284-5131603,5131683-5131836,5131915-5132044,5132131-5132282,5132372-5132575,5132702-5133046	AT5G15730.1  CDS  gene_syn F14F8.110, F14F8_110  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product serine/threonine protein kinase, putative  note serine/threonine protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G54590.2); Has 85719 Blast hits to 84715 proteins in 3302 species: Archae - 50; Bacteria - 7107; Metazoa - 38443; Fungi - 6686; Plants - 18507; Viruses - 411; Other Eukaryotes - 14515 (source: NCBI BLink).  protein_id AT5G15730.1p  transcript_id AT5G15730.1  protein_id AT5G15730.1p  transcript_id AT5G15730.1  
At5g15740	chr5:005136653	0.0	C/5136653-5136956,5136472-5136539,5136284-5136372,5136026-5136191,5135628-5135917,5135342-5135546,5135107-5135264,5134788-5135034	AT5G15740.1  CDS  gene_syn F14F8.120, F14F8_120  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02250.1); Has 425 Blast hits to 422 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 425; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G15740.1p  transcript_id AT5G15740.1  protein_id AT5G15740.1p  transcript_id AT5G15740.1  
At5g15750	chr5:005141449	0.0	W/5141449-5141582,5141704-5141811,5142291-5142365,5142470-5142701	AT5G15750.1  CDS  gene_syn F14F8.130, F14F8_130  go_function RNA binding|GO:0003723||IEA  go_function rRNA binding|GO:0019843||IEA  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_function RNA binding|GO:0003723||ISS  product RNA-binding S4 domain-containing protein  note RNA-binding S4 domain-containing protein; FUNCTIONS IN: RNA binding, rRNA binding; LOCATED IN: cytosolic small ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S4 (InterPro:IPR001912), RNA-binding S4 (InterPro:IPR002942); Has 877 Blast hits to 877 proteins in 267 species: Archae - 114; Bacteria - 0; Metazoa - 268; Fungi - 193; Plants - 105; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink).  protein_id AT5G15750.1p  transcript_id AT5G15750.1  protein_id AT5G15750.1p  transcript_id AT5G15750.1  
At5g15760	chr5:005143100	0.0	W/5143100-5143366,5143621-5143905	AT5G15760.1  CDS  gene_syn F14F8.140, F14F8_140  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_component chloroplast|GO:0009507||IEA  go_component plastid|GO:0009536||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_function structural constituent of ribosome|GO:0003735||ISS  product plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative  note plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, chloroplast, plastid; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein, PSRP-3/Ycf65 (InterPro:IPR006924); BEST Arabidopsis thaliana protein match is: plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative (TAIR:AT1G68590.2); Has 330 Blast hits to 330 proteins in 86 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 175 (source: NCBI BLink).  protein_id AT5G15760.1p  transcript_id AT5G15760.1  protein_id AT5G15760.1p  transcript_id AT5G15760.1  
At5g15770	chr5:005144093	0.0	C/5144093-5144542	AT5G15770.1  CDS  gene_syn Arabidopsis thaliana glucose-6-phosphate acetyltransferase 1, AtGNA1, F14F8.150, F14F8_150  gene AtGNA1  function Encodes a putative glucose-6-phosphate acetyltransferase involved in UDP-N-acetylglucosamine biosynthesis.  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function glucosamine 6-phosphate N-acetyltransferase activity|GO:0004343|15849305|ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product AtGNA1 (Arabidopsis thaliana glucose-6-phosphate acetyltransferase 1); N-acetyltransferase/ glucosamine 6-phosphate N-acetyltransferase  note Arabidopsis thaliana glucose-6-phosphate acetyltransferase 1 (AtGNA1); FUNCTIONS IN: glucosamine 6-phosphate N-acetyltransferase activity, N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 593 Blast hits to 586 proteins in 190 species: Archae - 13; Bacteria - 101; Metazoa - 169; Fungi - 122; Plants - 20; Viruses - 3; Other Eukaryotes - 165 (source: NCBI BLink).  protein_id AT5G15770.1p  transcript_id AT5G15770.1  protein_id AT5G15770.1p  transcript_id AT5G15770.1  
At5g15780	chr5:005146102	0.0	C/5146102-5146297,5144898-5145907	AT5G15780.1  CDS  gene_syn F14F8.160, F14F8_160  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pollen Ole e 1 allergen and extensin family protein  note pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen and extensin (InterPro:IPR006041); Has 75182 Blast hits to 31819 proteins in 1369 species: Archae - 252; Bacteria - 13906; Metazoa - 31718; Fungi - 6983; Plants - 10029; Viruses - 2694; Other Eukaryotes - 9600 (source: NCBI BLink).  protein_id AT5G15780.1p  transcript_id AT5G15780.1  protein_id AT5G15780.1p  transcript_id AT5G15780.1  
At5g15790	chr5:005149800	0.0	W/5149800-5149919,5150013-5150454,5150542-5150651,5150938-5150964	AT5G15790.1  CDS  gene_syn F14F8.170, F14F8_170  go_component chloroplast|GO:0009507||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G02290.1); Has 3719 Blast hits to 3712 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 1585; Fungi - 229; Plants - 1192; Viruses - 8; Other Eukaryotes - 705 (source: NCBI BLink).  protein_id AT5G15790.1p  transcript_id AT5G15790.1  protein_id AT5G15790.1p  transcript_id AT5G15790.1  
At5g15790	chr5:005149800	0.0	W/5149800-5149919,5150013-5150454,5150542-5150651,5150938-5150964	AT5G15790.2  CDS  gene_syn F14F8.170, F14F8_170  go_component chloroplast|GO:0009507||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G02290.1); Has 3719 Blast hits to 3712 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 1585; Fungi - 229; Plants - 1192; Viruses - 8; Other Eukaryotes - 705 (source: NCBI BLink).  protein_id AT5G15790.2p  transcript_id AT5G15790.2  protein_id AT5G15790.2p  transcript_id AT5G15790.2  
At5g15800	chr5:005153583	0.0	C/5153583-5153767,5152650-5152731,5152498-5152559,5152309-5152408,5152135-5152218,5151849-5151997,5151594-5151687	AT5G15800.1  CDS  gene_syn AGL2, F14F8.180, F14F8_180, SEP1, SEPALLATA1  gene SEP1  function Encodes a MADS box transcription factor involved flower and ovule development. Functionally redundant with SEP2 and SEP3.  go_component nucleus|GO:0005634||IEA  go_process flower development|GO:0009908|7948914|IDA  go_process ovule development|GO:0048481|14555696|IMP  go_function DNA binding|GO:0003677|1672119|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700|1672119|ISS  go_function transcription factor activity|GO:0003700|8597661|IDA  product SEP1 (SEPALLATA1); DNA binding / transcription factor  note SEPALLATA1 (SEP1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: flower development, ovule development; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: SEP2 (SEPALLATA 2); DNA binding / protein binding / transcription factor (TAIR:AT3G02310.1); Has 5430 Blast hits to 5427 proteins in 700 species: Archae - 3; Bacteria - 0; Metazoa - 554; Fungi - 207; Plants - 4612; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT5G15800.1p  transcript_id AT5G15800.1  protein_id AT5G15800.1p  transcript_id AT5G15800.1  
At5g15800	chr5:005153583	0.0	C/5153583-5153767,5152650-5152731,5152498-5152559,5152309-5152408,5152135-5152218,5151849-5151997,5151594-5151720	AT5G15800.2  CDS  gene_syn AGL2, F14F8.180, F14F8_180, SEP1, SEPALLATA1  gene SEP1  function Encodes a MADS box transcription factor involved flower and ovule development. Functionally redundant with SEP2 and SEP3.  go_component nucleus|GO:0005634||IEA  go_process flower development|GO:0009908|7948914|IDA  go_process ovule development|GO:0048481|14555696|IMP  go_function DNA binding|GO:0003677|1672119|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700|1672119|ISS  go_function transcription factor activity|GO:0003700|8597661|IDA  product SEP1 (SEPALLATA1); DNA binding / transcription factor  note SEPALLATA1 (SEP1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: flower development, ovule development; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: SEP2 (SEPALLATA 2); DNA binding / protein binding / transcription factor (TAIR:AT3G02310.1); Has 5430 Blast hits to 5427 proteins in 700 species: Archae - 3; Bacteria - 0; Metazoa - 554; Fungi - 207; Plants - 4612; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT5G15800.2p  transcript_id AT5G15800.2  protein_id AT5G15800.2p  transcript_id AT5G15800.2  
At5g15802	chr5:005157408	0.0	C/5157408-5157520,5156578-5156764	AT5G15802.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 21 Blast hits to 21 proteins in 9 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G15802.1p  transcript_id AT5G15802.1  protein_id AT5G15802.1p  transcript_id AT5G15802.1  
At5g15805	chr5:005157639	0.0	W/5157639-5157712	AT5G15805.1  tRNA  gene_syn 67994.TRNA-ILE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ile (anticodon: AAT)  transcript_id AT5G15805.1  
At5g15810	chr5:005157798	0.0	W/5157798-5158187,5158480-5158761,5158876-5158963,5159071-5159192,5159266-5159405,5159490-5159562,5159705-5159793,5159868-5159973,5160060-5160272,5160359-5160553,5160645-5160722,5160822-5161121	AT5G15810.1  CDS  gene_syn F14F8.190, F14F8_190  go_process tRNA processing|GO:0008033||IEA  go_function RNA binding|GO:0003723||IEA  go_function tRNA (guanine-N2-)-methyltransferase activity|GO:0004809||IEA  go_component cellular_component|GO:0005575||ND  go_process tRNA processing|GO:0008033||ISS  go_function RNA binding|GO:0003723||ISS  go_function tRNA (guanine-N2-)-methyltransferase activity|GO:0004809||ISS  product N2,N2-dimethylguanosine tRNA methyltransferase family protein  note N2,N2-dimethylguanosine tRNA methyltransferase family protein; FUNCTIONS IN: RNA binding, tRNA (guanine-N2-)-methyltransferase activity; INVOLVED IN: tRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: N2,N2-dimethylguanosine tRNA methyltransferase (InterPro:IPR002905); BEST Arabidopsis thaliana protein match is: RNA binding / tRNA (guanine-N2-)-methyltransferase (TAIR:AT3G02320.1); Has 760 Blast hits to 713 proteins in 256 species: Archae - 149; Bacteria - 59; Metazoa - 179; Fungi - 101; Plants - 53; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).  protein_id AT5G15810.1p  transcript_id AT5G15810.1  protein_id AT5G15810.1p  transcript_id AT5G15810.1  
At5g15815	chr5:005161512	0.0	W/5161512-5161583	AT5G15815.1  tRNA  gene_syn 67994.TRNA-ASP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asp (anticodon: GTC)  transcript_id AT5G15815.1  
At5g15820	chr5:005161787	0.0	W/5161787-5162833	AT5G15820.1  CDS  gene_syn F14F8.200, F14F8_200  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G02340.1); Has 5714 Blast hits to 5705 proteins in 197 species: Archae - 0; Bacteria - 6; Metazoa - 2140; Fungi - 398; Plants - 2247; Viruses - 17; Other Eukaryotes - 906 (source: NCBI BLink).  protein_id AT5G15820.1p  transcript_id AT5G15820.1  protein_id AT5G15820.1p  transcript_id AT5G15820.1  
At5g15830	chr5:005168591	0.0	W/5168591-5169151	AT5G15830.1  CDS  gene_syn Arabidopsis thaliana basic leucine-zipper 3, AtbZIP3, F14F8.210, F14F8_210  gene AtbZIP3  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  product AtbZIP3 (Arabidopsis thaliana basic leucine-zipper 3); DNA binding / transcription factor  note Arabidopsis thaliana basic leucine-zipper 3 (AtbZIP3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: ATBZIP42 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 42); DNA binding / protein heterodimerization/ protein homodimerization/ transcription factor (TAIR:AT3G30530.1); Has 1231 Blast hits to 1217 proteins in 115 species: Archae - 0; Bacteria - 6; Metazoa - 64; Fungi - 30; Plants - 954; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).  protein_id AT5G15830.1p  transcript_id AT5G15830.1  protein_id AT5G15830.1p  transcript_id AT5G15830.1  
At5g15833	chr5:005169990	0.0	W/5169990-5170131	AT5G15833.1  miRNA  gene_syn MICRORNA865A, MIR865A  gene MIR865A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: AUGAAUUUGGAUCUAAUUGAG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR865A (MICRORNA865A); miRNA  transcript_id AT5G15833.1  
At5g15840	chr5:005171873	0.0	C/5171873-5172697	AT5G15840.2  CDS  gene_syn CO, CONSTANS, F14F8.220, F14F8_220, FG  gene CO  function Encodes a protein showing similarities to zinc finger transcription factors, involved in regulation of flowering under long days. Acts upstream of FT and SOC1.  go_component nucleus|GO:0005634|17138697|IDA  go_component nucleus|GO:0005634||NAS  go_process circadian rhythm|GO:0007623|11323677|IGI  go_process regulation of flower development|GO:0009909|11323677|IMP  go_process far red light signaling pathway|GO:0010018|18667727|IMP  go_process response to far red light|GO:0010218|18790998|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  go_function transcription regulator activity|GO:0030528|7697715|ISS  product CO (CONSTANS); transcription factor/ transcription regulator/ zinc ion binding  note CONSTANS (CO); FUNCTIONS IN: transcription factor activity, transcription regulator activity, zinc ion binding; INVOLVED IN: far red light signaling pathway, response to far red light, circadian rhythm, regulation of flower development; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: COL1 (constans-like 1); transcription factor/ zinc ion binding (TAIR:AT5G15850.1); Has 1379 Blast hits to 939 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 2; Plants - 1262; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).  protein_id AT5G15840.2p  transcript_id AT5G15840.2  protein_id AT5G15840.2p  transcript_id AT5G15840.2  
At5g15840	chr5:005171936	0.0	C/5171936-5172697,5171343-5171702	AT5G15840.1  CDS  gene_syn CO, CONSTANS, F14F8.220, F14F8_220, FG  gene CO  function Encodes a protein showing similarities to zinc finger transcription factors, involved in regulation of flowering under long days. Acts upstream of FT and SOC1.  go_component nucleus|GO:0005634|17138697|IDA  go_component nucleus|GO:0005634||NAS  go_process circadian rhythm|GO:0007623|11323677|IGI  go_process regulation of flower development|GO:0009909|11323677|IMP  go_process far red light signaling pathway|GO:0010018|18667727|IMP  go_process response to far red light|GO:0010218|18790998|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  go_function transcription regulator activity|GO:0030528|7697715|ISS  product CO (CONSTANS); transcription factor/ transcription regulator/ zinc ion binding  note CONSTANS (CO); FUNCTIONS IN: transcription factor activity, transcription regulator activity, zinc ion binding; INVOLVED IN: far red light signaling pathway, response to far red light, circadian rhythm, regulation of flower development; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: COL1 (constans-like 1); transcription factor/ zinc ion binding (TAIR:AT5G15850.1); Has 2028 Blast hits to 1516 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 2; Plants - 1784; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).  protein_id AT5G15840.1p  transcript_id AT5G15840.1  protein_id AT5G15840.1p  transcript_id AT5G15840.1  
At5g15845	chr5:005173185	0.0	W/5173185-5177889	AT5G15845.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT5G15850  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G15845.1  
At5g15850	chr5:005176757	0.0	C/5176757-5177473,5176297-5176647	AT5G15850.1  CDS  gene_syn COL1, F14F8.230, F14F8_230, constans-like 1  gene COL1  function Homologous to the flowering-time gene CONSTANS.  go_component intracellular|GO:0005622||IEA  go_process circadian rhythm|GO:0007623|11359606|IEP  go_process circadian rhythm|GO:0007623|11359606|IMP  go_process regulation of flower development|GO:0009909|12019243|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product COL1 (constans-like 1); transcription factor/ zinc ion binding  note constans-like 1 (COL1); FUNCTIONS IN: transcription factor activity, zinc ion binding; INVOLVED IN: circadian rhythm, regulation of flower development; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: CO (CONSTANS); transcription factor/ transcription regulator/ zinc ion binding (TAIR:AT5G15840.1); Has 1837 Blast hits to 1442 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1686; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).  protein_id AT5G15850.1p  transcript_id AT5G15850.1  protein_id AT5G15850.1p  transcript_id AT5G15850.1  
At5g15853	chr5:005178107	0.0	W/5178107-5178307	AT5G15853.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G15853.1p  transcript_id AT5G15853.1  protein_id AT5G15853.1p  transcript_id AT5G15853.1  
At5g15860	chr5:005180986	0.0	C/5180986-5181263,5180648-5180724,5180445-5180514,5180235-5180315,5179901-5179975,5179703-5179804,5179394-5179610	AT5G15860.2  CDS  gene_syn ATPCME, F14F8.240, F14F8_240, PCME, PRENYLCYSTEINE METHYLESTERASE  gene ATPCME  function Encodes a protein with prenylcysteine methylesterase activity.  go_component membrane|GO:0016020|16870359|IDA  go_process biological_process|GO:0008150||ND  go_function prenylcysteine methylesterase activity|GO:0010296|16870359|IDA  product ATPCME (PRENYLCYSTEINE METHYLESTERASE); prenylcysteine methylesterase  note PRENYLCYSTEINE METHYLESTERASE (ATPCME); FUNCTIONS IN: prenylcysteine methylesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Carboxylesterase, type B (InterPro:IPR002018); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02410.1); Has 6659 Blast hits to 6640 proteins in 883 species: Archae - 28; Bacteria - 2572; Metazoa - 2429; Fungi - 405; Plants - 108; Viruses - 8; Other Eukaryotes - 1109 (source: NCBI BLink).  protein_id AT5G15860.2p  transcript_id AT5G15860.2  protein_id AT5G15860.2p  transcript_id AT5G15860.2  
At5g15860	chr5:005180986	0.0	C/5180986-5181263,5180648-5180724,5180445-5180514,5180235-5180315,5179901-5179975,5179703-5179804,5179473-5179610,5179318-5179383,5179106-5179249,5178939-5179029,5178676-5178837	AT5G15860.1  CDS  gene_syn ATPCME, F14F8.240, F14F8_240, PCME, PRENYLCYSTEINE METHYLESTERASE  gene ATPCME  function Encodes a protein with prenylcysteine methylesterase activity.  go_component membrane|GO:0016020|16870359|IDA  go_process biological_process|GO:0008150||ND  go_function prenylcysteine methylesterase activity|GO:0010296|16870359|IDA  product ATPCME (PRENYLCYSTEINE METHYLESTERASE); prenylcysteine methylesterase  note PRENYLCYSTEINE METHYLESTERASE (ATPCME); FUNCTIONS IN: prenylcysteine methylesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Carboxylesterase, type B (InterPro:IPR002018); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02410.1); Has 7215 Blast hits to 7194 proteins in 938 species: Archae - 43; Bacteria - 2946; Metazoa - 2452; Fungi - 423; Plants - 113; Viruses - 8; Other Eukaryotes - 1230 (source: NCBI BLink).  protein_id AT5G15860.1p  transcript_id AT5G15860.1  protein_id AT5G15860.1p  transcript_id AT5G15860.1  
At5g15870	chr5:005182641	0.0	C/5182641-5184878	AT5G15870.1  CDS  gene_syn F1N13.10, F1N13_10  go_function endo-1,3(4)-beta-glucanase activity|GO:0033903||IEA  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product glycosyl hydrolase family 81 protein  note glycosyl hydrolase family 81 protein; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, endo-1,3(4)-beta-glucanase activity; INVOLVED IN: response to cyclopentenone; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 81 (InterPro:IPR005200); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 81 protein (TAIR:AT1G18310.1); Has 593 Blast hits to 503 proteins in 121 species: Archae - 0; Bacteria - 53; Metazoa - 84; Fungi - 150; Plants - 126; Viruses - 54; Other Eukaryotes - 126 (source: NCBI BLink).  protein_id AT5G15870.1p  transcript_id AT5G15870.1  protein_id AT5G15870.1p  transcript_id AT5G15870.1  
At5g15880	chr5:005185788	0.0	W/5185788-5186072,5186204-5186326,5186431-5186619,5186712-5186793,5187018-5187082,5187159-5187461	AT5G15880.1  CDS  gene_syn F1N13.20, F1N13_20  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 3355 Blast hits to 2831 proteins in 380 species: Archae - 39; Bacteria - 297; Metazoa - 1854; Fungi - 262; Plants - 105; Viruses - 3; Other Eukaryotes - 795 (source: NCBI BLink).  protein_id AT5G15880.1p  transcript_id AT5G15880.1  protein_id AT5G15880.1p  transcript_id AT5G15880.1  
At5g15890	chr5:005188518	0.0	C/5188518-5189348,5187687-5188436	AT5G15890.1  CDS  gene_syn F1N13.30, F1N13_30  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G15900.1); Has 1084 Blast hits to 1007 proteins in 102 species: Archae - 2; Bacteria - 26; Metazoa - 95; Fungi - 84; Plants - 789; Viruses - 29; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT5G15890.1p  transcript_id AT5G15890.1  protein_id AT5G15890.1p  transcript_id AT5G15890.1  
At5g15900	chr5:005191594	0.0	C/5191594-5192070,5189524-5190327	AT5G15900.1  CDS  gene_syn F1N13.40, F1N13_40  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G15890.1); Has 696 Blast hits to 686 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 696; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G15900.1p  transcript_id AT5G15900.1  protein_id AT5G15900.1p  transcript_id AT5G15900.1  
At5g15910	chr5:005193207	0.0	W/5193207-5193265,5193494-5193563,5193839-5193927,5194019-5194074,5194175-5194230,5194303-5194396,5194551-5194630,5194716-5194758,5194850-5194941,5195032-5195202	AT5G15910.1  CDS  gene_syn F1N13.50, F1N13_50  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  product dehydrogenase-related  note dehydrogenase-related; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: cellular metabolic process, metabolic process; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: binding / catalytic/ coenzyme binding (TAIR:AT5G10730.1); Has 4174 Blast hits to 4174 proteins in 940 species: Archae - 63; Bacteria - 2510; Metazoa - 105; Fungi - 172; Plants - 313; Viruses - 2; Other Eukaryotes - 1009 (source: NCBI BLink).  protein_id AT5G15910.1p  transcript_id AT5G15910.1  protein_id AT5G15910.1p  transcript_id AT5G15910.1  
At5g15920	chr5:005196210	0.0	W/5196210-5199126,5199216-5199288,5199388-5199559	AT5G15920.1  CDS  gene_syn F1N13.60, F1N13_60  go_component chromosome|GO:0005694||IEA  go_function ATP binding|GO:0005524||IEA  go_component nucleus|GO:0005634||ISS  go_process chromosome segregation|GO:0007059||ISS  go_function ATP binding|GO:0005524||ISS  product structural maintenance of chromosomes (SMC) family protein (MSS2)  note structural maintenance of chromosomes (SMC) family protein (MSS2); FUNCTIONS IN: ATP binding; INVOLVED IN: chromosome segregation; LOCATED IN: chromosome, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: MIM (hypersensitive to MMS, irradiation and MMC); ATP binding (TAIR:AT5G61460.1); Has 53696 Blast hits to 28151 proteins in 1680 species: Archae - 715; Bacteria - 7485; Metazoa - 25639; Fungi - 3625; Plants - 1389; Viruses - 117; Other Eukaryotes - 14726 (source: NCBI BLink).  protein_id AT5G15920.1p  transcript_id AT5G15920.1  protein_id AT5G15920.1p  transcript_id AT5G15920.1  
At5g15930	chr5:005200329	0.0	W/5200329-5200471,5200570-5200765,5200864-5201034,5201120-5201236,5201628-5201825,5201913-5202071,5202164-5202250	AT5G15930.1  CDS  gene_syn F1N13.70, F1N13_70, PAM1, plant adhesion molecule 1  gene PAM1  function Encodes a putative plant adhesion molecule.  go_component intracellular|GO:0005622||IEA  go_process regulation of Rab GTPase activity|GO:0032313||IEA  go_function RAB GTPase activator activity|GO:0005097||IEA  product PAM1 (plant adhesion molecule 1); RAB GTPase activator  note plant adhesion molecule 1 (PAM1); FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: plant adhesion molecule, putative (TAIR:AT3G02460.1); Has 4162 Blast hits to 4157 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 2379; Fungi - 746; Plants - 277; Viruses - 0; Other Eukaryotes - 760 (source: NCBI BLink).  protein_id AT5G15930.1p  transcript_id AT5G15930.1  protein_id AT5G15930.1p  transcript_id AT5G15930.1  
At5g15940	chr5:005202801	0.0	W/5202801-5202998,5203154-5203220,5203330-5203358,5203452-5203660,5203775-5203893,5203976-5204071,5204158-5204233,5204316-5204469,5204569-5204715	AT5G15940.1  CDS  gene_syn F1N13.80, F1N13_80  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product binding / catalytic/ oxidoreductase  note binding / catalytic/ oxidoreductase; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: sperm cell, pollen tube; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT5G04070.1); Has 31918 Blast hits to 31894 proteins in 1727 species: Archae - 258; Bacteria - 16091; Metazoa - 3762; Fungi - 2008; Plants - 999; Viruses - 0; Other Eukaryotes - 8800 (source: NCBI BLink).  protein_id AT5G15940.1p  transcript_id AT5G15940.1  protein_id AT5G15940.1p  transcript_id AT5G15940.1  
At5g15948	chr5:005206432	0.0	W/5206432-5206587	AT5G15948.1  CDS  gene_syn CPuORF10, Conserved peptide upstream open reading frame 10  gene CPuORF10  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF10 represents a conserved upstream opening reading frame relative to major ORF AT5G15950.1  product CPuORF10 (Conserved peptide upstream open reading frame 10)  note Conserved peptide upstream open reading frame 10 (CPuORF10); CONTAINS InterPro DOMAIN/s: S-adenosyl-l-methionine decarboxylase leader peptide (InterPro:IPR012511); BEST Arabidopsis thaliana protein match is: CPuORF9 (Conserved peptide upstream open reading frame 9) (TAIR:AT3G02468.1); Has 24 Blast hits to 24 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G15948.1p  transcript_id AT5G15948.1  protein_id AT5G15948.1p  transcript_id AT5G15948.1  
At5g15950	chr5:005206706	0.0	W/5206706-5207794	AT5G15950.1  CDS  gene_syn F1N13.90, F1N13_90  go_process polyamine biosynthetic process|GO:0006596||IEA  go_process spermine biosynthetic process|GO:0006597||IEA  go_process spermidine biosynthetic process|GO:0008295||IEA  go_function adenosylmethionine decarboxylase activity|GO:0004014||IEA  go_component cellular_component|GO:0005575||ND  go_function adenosylmethionine decarboxylase activity|GO:0004014||ISS  product adenosylmethionine decarboxylase family protein  note adenosylmethionine decarboxylase family protein; FUNCTIONS IN: adenosylmethionine decarboxylase activity; INVOLVED IN: spermidine biosynthetic process, spermine biosynthetic process, polyamine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine decarboxylase, core (InterPro:IPR016067), S-adenosylmethionine decarboxylase (InterPro:IPR001985), S-adenosylmethionine decarboxylase, conserved site (InterPro:IPR018166), S-adenosylmethionine decarboxylase subgroup (InterPro:IPR018167); BEST Arabidopsis thaliana protein match is: SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE); adenosylmethionine decarboxylase (TAIR:AT3G02470.4); Has 830 Blast hits to 816 proteins in 205 species: Archae - 0; Bacteria - 50; Metazoa - 174; Fungi - 104; Plants - 446; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT5G15950.1p  transcript_id AT5G15950.1  protein_id AT5G15950.1p  transcript_id AT5G15950.1  
At5g15950	chr5:005206706	0.0	W/5206706-5207794	AT5G15950.2  CDS  gene_syn F1N13.90, F1N13_90  go_process spermine biosynthetic process|GO:0006597||IEA  go_process spermidine biosynthetic process|GO:0008295||IEA  go_function adenosylmethionine decarboxylase activity|GO:0004014||IEA  go_component cellular_component|GO:0005575||ND  go_function adenosylmethionine decarboxylase activity|GO:0004014||ISS  product adenosylmethionine decarboxylase family protein  note adenosylmethionine decarboxylase family protein; FUNCTIONS IN: adenosylmethionine decarboxylase activity; INVOLVED IN: spermidine biosynthetic process, spermine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine decarboxylase, core (InterPro:IPR016067), S-adenosylmethionine decarboxylase (InterPro:IPR001985), S-adenosylmethionine decarboxylase, conserved site (InterPro:IPR018166), S-adenosylmethionine decarboxylase subgroup (InterPro:IPR018167); BEST Arabidopsis thaliana protein match is: SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE); adenosylmethionine decarboxylase (TAIR:AT3G02470.4); Has 830 Blast hits to 816 proteins in 205 species: Archae - 0; Bacteria - 50; Metazoa - 174; Fungi - 104; Plants - 446; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT5G15950.2p  transcript_id AT5G15950.2  protein_id AT5G15950.2p  transcript_id AT5G15950.2  
At5g15960	chr5:005209992	0.0	W/5209992-5210048,5210223-5210291,5210399-5210473	AT5G15960.1  CDS  gene_syn F1N13.100, F1N13_100, KIN1  gene KIN1  function cold and ABA inducible protein kin1, possibly functions as an anti-freeze protein. Transcript level of this gene is induced by cold, ABA, dehydration and osmoticum (mannitol). However, protein activity of GUS fused to the promoter of this gene is inhibited by cold treatment, suggesting an inhibition of the protein by increased transcript level.  go_component cellular_component|GO:0005575||ND  go_process response to osmotic stress|GO:0006970|11779861|IGI  go_process response to osmotic stress|GO:0006970|7647294|IEP  go_process response to cold|GO:0009409|16258011|IEP  go_process response to water deprivation|GO:0009414|18552355|IEP  go_process response to water deprivation|GO:0009414|7647294|IEP  go_process cold acclimation|GO:0009631|2151730|IDA  go_process response to abscisic acid stimulus|GO:0009737|7647294|IEP  go_process red or far red light signaling pathway|GO:0010017|17965713|IEP  go_function molecular_function|GO:0003674||ND  product KIN1  note KIN1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 6 processes; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: KIN2 (TAIR:AT5G15970.1); Has 52 Blast hits to 52 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G15960.1p  transcript_id AT5G15960.1  protein_id AT5G15960.1p  transcript_id AT5G15960.1  
At5g15970	chr5:005211966	0.0	W/5211966-5212022,5212184-5212252,5212367-5212441	AT5G15970.1  CDS  gene_syn COLD-RESPONSIVE 6.6, COR6.6, F1N13.110, F1N13_110, KIN2  gene KIN2  function Encodes a gene that can be induced by cold and abscisic acid and may be involved in cold acclimation and salt tolerance.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component cytoplasm|GO:0005737|8685269|TAS  go_process response to osmotic stress|GO:0006970|7647294|IEP  go_process response to cold|GO:0009409||NAS  go_process response to water deprivation|GO:0009414|18552355|IEP  go_process response to water deprivation|GO:0009414|7647294|IEP  go_process response to salt stress|GO:0009651|11351099|IEP  go_process response to abscisic acid stimulus|GO:0009737|7647294|IEP  go_function molecular_function|GO:0003674||ND  product KIN2  note KIN2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress, response to water deprivation, response to cold, response to abscisic acid stimulus, response to osmotic stress; LOCATED IN: nucleus, chloroplast, plasma membrane, cytoplasm; BEST Arabidopsis thaliana protein match is: KIN1 (TAIR:AT5G15960.1); Has 53 Blast hits to 53 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G15970.1p  transcript_id AT5G15970.1  protein_id AT5G15970.1p  transcript_id AT5G15970.1  
At5g15980	chr5:005213290	0.0	W/5213290-5215296	AT5G15980.1  CDS  gene_syn F1N13.120, F1N13_120  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G02490.1); Has 4016 Blast hits to 1961 proteins in 56 species: Archae - 0; Bacteria - 17; Metazoa - 19; Fungi - 4; Plants - 3946; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT5G15980.1p  transcript_id AT5G15980.1  protein_id AT5G15980.1p  transcript_id AT5G15980.1  
At5g15990	chr5:005217775	0.0	W/5217775-5218267	AT5G15990.1  mRNA_TE_gene  pseudo  gene_syn F1N13.130, F1N13_130  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G37880.1)  
At5g15995	chr5:005218644	0.0	C/5218644-5220913	AT5G15995.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 1.2e-36 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At5g16000	chr5:005224264	0.0	W/5224264-5224387,5224572-5224704,5224794-5224865,5224970-5225113,5225209-5225280,5225380-5225439,5225524-5225621,5225705-5225854,5225940-5227003	AT5G16000.1  CDS  gene_syn F1N13.140, F1N13_140, NIK1, NSP-INTERACTING KINASE 1  gene NIK1  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product NIK1 (NSP-INTERACTING KINASE 1); kinase  note NSP-INTERACTING KINASE 1 (NIK1); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: NIK2 (NSP-INTERACTING KINASE 2); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase (TAIR:AT3G25560.1); Has 115181 Blast hits to 84765 proteins in 3025 species: Archae - 57; Bacteria - 8447; Metazoa - 38105; Fungi - 5770; Plants - 47170; Viruses - 378; Other Eukaryotes - 15254 (source: NCBI BLink).  protein_id AT5G16000.1p  transcript_id AT5G16000.1  protein_id AT5G16000.1p  transcript_id AT5G16000.1  
At5g16010	chr5:005227982	0.0	W/5227982-5228314,5228539-5229012	AT5G16010.1  CDS  gene_syn F1N13.150, F1N13_150  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function oxidoreductase activity, acting on the CH-CH group of donors|GO:0016627||IEA  go_function 3-oxo-5-alpha-steroid 4-dehydrogenase activity|GO:0003865||ISS  product 3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein  note 3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein; FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors, 3-oxo-5-alpha-steroid 4-dehydrogenase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal (InterPro:IPR001104); BEST Arabidopsis thaliana protein match is: DET2 (DE-ETIOLATED 2); sterol 5-alpha reductase (TAIR:AT2G38050.1); Has 1046 Blast hits to 1046 proteins in 184 species: Archae - 0; Bacteria - 40; Metazoa - 396; Fungi - 154; Plants - 129; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink).  protein_id AT5G16010.1p  transcript_id AT5G16010.1  protein_id AT5G16010.1p  transcript_id AT5G16010.1  
At5g16020	chr5:005229692	0.0	W/5229692-5229785,5229888-5230075,5230151-5230459,5230537-5230786,5230866-5231150,5231242-5231421,5231525-5231667,5231765-5232241	AT5G16020.1  CDS  gene_syn F1N13.160, F1N13_160  go_component endomembrane system|GO:0012505||IEA  go_function molecular_function|GO:0003674||ND  product stress protein-related  note stress protein-related; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Quinonprotein alcohol dehydrogenase-like (InterPro:IPR011047); Has 84 Blast hits to 73 proteins in 25 species: Archae - 18; Bacteria - 28; Metazoa - 0; Fungi - 2; Plants - 16; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT5G16020.1p  transcript_id AT5G16020.1  protein_id AT5G16020.1p  transcript_id AT5G16020.1  
At5g16023	chr5:005232731	0.0	C/5232731-5232886	AT5G16023.1  CDS  gene_syn DEVIL 1, DVL1, ROTUNDIFOLIA LIKE 18, RTFL18  gene RTFL18  go_component cellular_component|GO:0005575||ND  go_process shoot development|GO:0048367|14871303|IMP  go_function molecular_function|GO:0003674||ND  product RTFL18 (ROTUNDIFOLIA LIKE 18)  note ROTUNDIFOLIA LIKE 18 (RTFL18); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: shoot development; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, root, leaf; CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); BEST Arabidopsis thaliana protein match is: RTFL19 (ROTUNDIFOLIA LIKE 19) (TAIR:AT3G02493.1); Has 31 Blast hits to 31 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G16023.1p  transcript_id AT5G16023.1  protein_id AT5G16023.1p  transcript_id AT5G16023.1  
At5g16030	chr5:005238242	0.0	W/5238242-5238449,5238541-5238585,5238680-5238997,5239109-5239293,5240312-5240578	AT5G16030.2  CDS  gene_syn F1N13.170, F1N13_170  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02500.1); Has 38140 Blast hits to 13671 proteins in 701 species: Archae - 63; Bacteria - 982; Metazoa - 18719; Fungi - 3220; Plants - 1165; Viruses - 1140; Other Eukaryotes - 12851 (source: NCBI BLink).  protein_id AT5G16030.2p  transcript_id AT5G16030.2  protein_id AT5G16030.2p  transcript_id AT5G16030.2  
At5g16030	chr5:005238242	0.0	W/5238242-5238449,5238541-5238585,5238683-5238997,5239085-5239293,5240312-5240578	AT5G16030.3  CDS  gene_syn F1N13.170, F1N13_170  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02500.1); Has 1296 Blast hits to 1272 proteins in 261 species: Archae - 2; Bacteria - 16; Metazoa - 651; Fungi - 174; Plants - 82; Viruses - 7; Other Eukaryotes - 364 (source: NCBI BLink).  protein_id AT5G16030.3p  transcript_id AT5G16030.3  protein_id AT5G16030.3p  transcript_id AT5G16030.3  
At5g16030	chr5:005238242	0.0	W/5238242-5238449,5238541-5238585,5238683-5238997,5239109-5239293,5240312-5240578	AT5G16030.1  CDS  gene_syn F1N13.170, F1N13_170  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02500.1); Has 38109 Blast hits to 13648 proteins in 698 species: Archae - 63; Bacteria - 975; Metazoa - 18695; Fungi - 3220; Plants - 1159; Viruses - 1142; Other Eukaryotes - 12855 (source: NCBI BLink).  protein_id AT5G16030.1p  transcript_id AT5G16030.1  protein_id AT5G16030.1p  transcript_id AT5G16030.1  
At5g16040	chr5:005243280	0.0	C/5243280-5243308,5243045-5243189,5242575-5242685,5242419-5242479,5242206-5242321,5242018-5242103,5241726-5241927,5241558-5241611,5241297-5241410,5241166-5241222,5240860-5241075	AT5G16040.1  CDS  gene_syn F1N13.180, F1N13_180  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function chromatin binding|GO:0003682||ISS  go_function Ran GTPase binding|GO:0008536||ISS  product regulator of chromosome condensation (RCC1) family protein  note regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: chromatin binding, Ran GTPase binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: regulator of chromosome condensation (RCC1) family protein (TAIR:AT3G02510.1); Has 18081 Blast hits to 4878 proteins in 324 species: Archae - 75; Bacteria - 2033; Metazoa - 6878; Fungi - 1062; Plants - 1472; Viruses - 6; Other Eukaryotes - 6555 (source: NCBI BLink).  protein_id AT5G16040.1p  transcript_id AT5G16040.1  protein_id AT5G16040.1p  transcript_id AT5G16040.1  
At5g16050	chr5:005244920	0.0	C/5244920-5245402,5244710-5244832,5244206-5244322,5244008-5244091	AT5G16050.1  CDS  gene_syn F1N13.190, F1N13_190, GENERAL REGULATORY FACTOR 5, GF14 UPSILON, GF14 UPSILON CHAIN, GRF5  gene GRF5  function Encodes GF14 upsilon chain, a 14-3-3 gene family member.  go_component cell wall|GO:0005618|16287169|IDA  go_component mitochondrion|GO:0005739|17137349|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ATP binding|GO:0005524|17137349|IDA  go_component nuclear envelope|GO:0005635||IDA  go_component cytoplasm|GO:0005737||IDA  go_component plasma membrane|GO:0005886||IDA  go_component chloroplast stroma|GO:0009570|9276953|IDA  go_function protein binding|GO:0005515||NAS  go_function protein phosphorylated amino acid binding|GO:0045309|10631267|TAS  product GRF5 (GENERAL REGULATORY FACTOR 5); ATP binding / protein binding / protein phosphorylated amino acid binding  note GENERAL REGULATORY FACTOR 5 (GRF5); FUNCTIONS IN: protein phosphorylated amino acid binding, protein binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: GRF7 (GENERAL REGULATORY FACTOR 7); protein binding / protein phosphorylated amino acid binding (TAIR:AT3G02520.1); Has 2086 Blast hits to 2078 proteins in 292 species: Archae - 0; Bacteria - 2; Metazoa - 1026; Fungi - 209; Plants - 541; Viruses - 0; Other Eukaryotes - 308 (source: NCBI BLink).  protein_id AT5G16050.1p  transcript_id AT5G16050.1  protein_id AT5G16050.1p  transcript_id AT5G16050.1  
At5g16060	chr5:005246161	0.0	W/5246161-5246218,5246559-5246706,5247128-5247209	AT5G16060.1  CDS  gene_syn F1N13.200, F1N13_200  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase biogenesis protein Cmc1-like (InterPro:IPR013892); Has 47 Blast hits to 47 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 17; Plants - 21; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G16060.1p  transcript_id AT5G16060.1  protein_id AT5G16060.1p  transcript_id AT5G16060.1  
At5g16070	chr5:005250917	0.0	C/5250917-5251050,5250768-5250831,5250380-5250515,5250013-5250164,5249879-5249926,5249648-5249740,5249426-5249532,5249216-5249330,5249053-5249136,5248561-5248765,5248369-5248463,5248134-5248202,5247932-5248039,5247718-5247836,5247549-5247627	AT5G16070.1  CDS  gene_syn F1N13.210, F1N13_210  go_process protein folding|GO:0006457||IEA  go_process cellular protein metabolic process|GO:0044267||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  product chaperonin, putative  note chaperonin, putative; FUNCTIONS IN: unfolded protein binding, protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, zeta subunit (InterPro:IPR012722), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: chaperonin, putative (TAIR:AT3G02530.1); Has 13396 Blast hits to 13111 proteins in 2310 species: Archae - 391; Bacteria - 5488; Metazoa - 1822; Fungi - 967; Plants - 464; Viruses - 0; Other Eukaryotes - 4264 (source: NCBI BLink).  protein_id AT5G16070.1p  transcript_id AT5G16070.1  protein_id AT5G16070.1p  transcript_id AT5G16070.1  
At5g16080	chr5:005252533	0.0	C/5252533-5253567	AT5G16080.1  CDS  gene_syn Arabidopsis thaliana carboxyesterase 17, AtCXE17, F1N13.220, F1N13_220  gene AtCXE17  go_process metabolic process|GO:0008152||IEA  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  product AtCXE17 (Arabidopsis thaliana carboxyesterase 17); hydrolase  note Arabidopsis thaliana carboxyesterase 17 (AtCXE17); FUNCTIONS IN: hydrolase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDXG, active site (InterPro:IPR002168), Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: hydrolase (TAIR:AT1G68620.1); Has 7022 Blast hits to 7003 proteins in 938 species: Archae - 47; Bacteria - 3292; Metazoa - 1260; Fungi - 612; Plants - 651; Viruses - 3; Other Eukaryotes - 1157 (source: NCBI BLink).  protein_id AT5G16080.1p  transcript_id AT5G16080.1  protein_id AT5G16080.1p  transcript_id AT5G16080.1  
At5g16090	chr5:005257165	0.0	C/5257165-5257230,5256730-5256891,5256391-5256494,5256002-5256080,5255797-5255901	AT5G16090.1  CDS  gene_syn T21H19.10, T21H19_10  go_process protein modification process|GO:0006464||IEA  product unknown protein  note INVOLVED IN: protein modification process; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin (InterPro:IPR000626), UV excision repair protein Rad23, C-terminal (InterPro:IPR014761), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3) (TAIR:AT3G02540.2); Has 550 Blast hits to 550 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 338; Fungi - 37; Plants - 110; Viruses - 26; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT5G16090.1p  transcript_id AT5G16090.1  protein_id AT5G16090.1p  transcript_id AT5G16090.1  
At5g16100	chr5:005259149	0.0	C/5259149-5259719,5258551-5259053	AT5G16100.1  CDS  gene_syn T21H19.20, T21H19_20  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 7 Blast hits to 7 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G16100.1p  transcript_id AT5G16100.1  protein_id AT5G16100.1p  transcript_id AT5G16100.1  
At5g16110	chr5:005262501	0.0	C/5262501-5262668,5261792-5261970,5261643-5261709,5261171-5261491	AT5G16110.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02555.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G16110.1p  transcript_id AT5G16110.1  protein_id AT5G16110.1p  transcript_id AT5G16110.1  
At5g16120	chr5:005265820	0.0	W/5265820-5265826,5266001-5266188,5266352-5266381,5266481-5266607,5266683-5266829,5266923-5267053,5267133-5267270,5267359-5267457,5267533-5267775	AT5G16120.2  CDS  gene_syn T21H19.40, T21H19_40  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT1G77420.1); Has 3068 Blast hits to 3064 proteins in 815 species: Archae - 20; Bacteria - 1988; Metazoa - 126; Fungi - 101; Plants - 252; Viruses - 41; Other Eukaryotes - 540 (source: NCBI BLink).  protein_id AT5G16120.2p  transcript_id AT5G16120.2  protein_id AT5G16120.2p  transcript_id AT5G16120.2  
At5g16120	chr5:005266048	0.0	W/5266048-5266188,5266352-5266381,5266481-5266607,5266683-5266829,5266923-5267053,5267133-5267270,5267359-5267457,5267533-5267775	AT5G16120.1  CDS  gene_syn T21H19.40, T21H19_40  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT1G77420.1); Has 3060 Blast hits to 3056 proteins in 812 species: Archae - 20; Bacteria - 1981; Metazoa - 126; Fungi - 99; Plants - 252; Viruses - 41; Other Eukaryotes - 541 (source: NCBI BLink).  protein_id AT5G16120.1p  transcript_id AT5G16120.1  protein_id AT5G16120.1p  transcript_id AT5G16120.1  
At5g16130	chr5:005268984	0.0	W/5268984-5269058,5269134-5269207,5269298-5269421,5269520-5269702,5269796-5269912	AT5G16130.1  CDS  gene_syn T21H19.50, T21H19_50  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S7 (RPS7C)  note 40S ribosomal protein S7 (RPS7C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S7e (InterPro:IPR000554); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S7 (RPS7B) (TAIR:AT3G02560.2); Has 554 Blast hits to 554 proteins in 221 species: Archae - 0; Bacteria - 0; Metazoa - 253; Fungi - 94; Plants - 107; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).  protein_id AT5G16130.1p  transcript_id AT5G16130.1  protein_id AT5G16130.1p  transcript_id AT5G16130.1  
At5g16140	chr5:005271326	0.0	C/5271326-5271517,5271162-5271246,5271011-5271078,5270871-5270921,5270722-5270795,5270587-5270645,5270308-5270501	AT5G16140.1  CDS  gene_syn T21H19.60, T21H19_60  go_process translation|GO:0006412||IEA  go_function aminoacyl-tRNA hydrolase activity|GO:0004045||IEA  go_process translation|GO:0006412||ISS  go_function aminoacyl-tRNA hydrolase activity|GO:0004045||ISS  product peptidyl-tRNA hydrolase family protein  note peptidyl-tRNA hydrolase family protein; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, conserved site (InterPro:IPR018171), Peptidyl-tRNA hydrolase (InterPro:IPR001328); BEST Arabidopsis thaliana protein match is: peptidyl-tRNA hydrolase family protein (TAIR:AT5G38290.2); Has 5393 Blast hits to 5390 proteins in 1416 species: Archae - 0; Bacteria - 2886; Metazoa - 37; Fungi - 45; Plants - 77; Viruses - 0; Other Eukaryotes - 2348 (source: NCBI BLink).  protein_id AT5G16140.1p  transcript_id AT5G16140.1  protein_id AT5G16140.1p  transcript_id AT5G16140.1  
At5g16140	chr5:005271326	0.0	C/5271326-5271517,5271162-5271246,5271011-5271078,5270871-5270921,5270722-5270795,5270587-5270645,5270308-5270501	AT5G16140.2  CDS  gene_syn T21H19.60, T21H19_60  go_process translation|GO:0006412||IEA  go_function aminoacyl-tRNA hydrolase activity|GO:0004045||IEA  go_process translation|GO:0006412||ISS  go_function aminoacyl-tRNA hydrolase activity|GO:0004045||ISS  product peptidyl-tRNA hydrolase family protein  note peptidyl-tRNA hydrolase family protein; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, conserved site (InterPro:IPR018171), Peptidyl-tRNA hydrolase (InterPro:IPR001328); BEST Arabidopsis thaliana protein match is: peptidyl-tRNA hydrolase family protein (TAIR:AT5G38290.2); Has 5393 Blast hits to 5390 proteins in 1416 species: Archae - 0; Bacteria - 2886; Metazoa - 37; Fungi - 45; Plants - 77; Viruses - 0; Other Eukaryotes - 2348 (source: NCBI BLink).  protein_id AT5G16140.2p  transcript_id AT5G16140.2  protein_id AT5G16140.2p  transcript_id AT5G16140.2  
At5g16150	chr5:005272904	0.0	W/5272904-5273159,5273303-5273417,5273490-5273557,5273670-5273802,5273886-5273985,5274086-5274198,5274280-5274373,5274448-5274601,5274720-5274866,5274942-5275015,5275120-5275208,5275292-5275406,5275496-5275678	AT5G16150.1  CDS  gene_syn GLT1, GLUCOSE TRANSPORTER 1, PGLCT, PLASTIDIC GLC TRANSLOCATOR, T21H19.70, T21H19_70  gene PGLCT  function Encodes a putative plastidic glucose transporter.  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020||ISS  go_process response to trehalose stimulus|GO:0010353|17031512|IEP  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product PGLCT (PLASTIDIC GLC TRANSLOCATOR); carbohydrate transmembrane transporter/ sugar:hydrogen symporter  note PLASTIDIC GLC TRANSLOCATOR (PGLCT); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: response to trehalose stimulus; LOCATED IN: membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: hexose transporter, putative (TAIR:AT1G05030.1); Has 32693 Blast hits to 32019 proteins in 1725 species: Archae - 509; Bacteria - 18321; Metazoa - 4876; Fungi - 5439; Plants - 1503; Viruses - 0; Other Eukaryotes - 2045 (source: NCBI BLink).  protein_id AT5G16150.1p  transcript_id AT5G16150.1  protein_id AT5G16150.1p  transcript_id AT5G16150.1  
At5g16150	chr5:005272904	0.0	W/5272904-5273159,5273303-5273417,5273490-5273557,5273670-5273802,5273886-5273985,5274086-5274198,5274280-5274373,5274448-5274601,5274720-5274866,5274942-5275015,5275120-5275208,5275292-5275406,5275496-5275678	AT5G16150.2  CDS  gene_syn GLT1, GLUCOSE TRANSPORTER 1, PGLCT, PLASTIDIC GLC TRANSLOCATOR, T21H19.70, T21H19_70  gene PGLCT  function Encodes a putative plastidic glucose transporter.  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020||ISS  go_process response to trehalose stimulus|GO:0010353|17031512|IEP  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product PGLCT (PLASTIDIC GLC TRANSLOCATOR); carbohydrate transmembrane transporter/ sugar:hydrogen symporter  note PLASTIDIC GLC TRANSLOCATOR (PGLCT); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: response to trehalose stimulus; LOCATED IN: membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: hexose transporter, putative (TAIR:AT1G05030.1); Has 32693 Blast hits to 32019 proteins in 1725 species: Archae - 509; Bacteria - 18321; Metazoa - 4876; Fungi - 5439; Plants - 1503; Viruses - 0; Other Eukaryotes - 2045 (source: NCBI BLink).  protein_id AT5G16150.2p  transcript_id AT5G16150.2  protein_id AT5G16150.2p  transcript_id AT5G16150.2  
At5g16150	chr5:005272904	0.0	W/5272904-5273159,5273303-5273417,5273490-5273557,5273670-5273802,5273886-5273985,5274086-5274198,5274280-5274373,5274448-5274601,5274720-5274866,5274942-5275015,5275120-5275208,5275292-5275406,5275496-5275678	AT5G16150.3  CDS  gene_syn GLT1, GLUCOSE TRANSPORTER 1, PGLCT, PLASTIDIC GLC TRANSLOCATOR, T21H19.70, T21H19_70  gene PGLCT  function Encodes a putative plastidic glucose transporter.  go_component membrane|GO:0016020||ISS  go_process response to trehalose stimulus|GO:0010353|17031512|IEP  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product PGLCT (PLASTIDIC GLC TRANSLOCATOR); carbohydrate transmembrane transporter/ sugar:hydrogen symporter  note PLASTIDIC GLC TRANSLOCATOR (PGLCT); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: response to trehalose stimulus; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: hexose transporter, putative (TAIR:AT1G05030.1); Has 32693 Blast hits to 32019 proteins in 1725 species: Archae - 509; Bacteria - 18321; Metazoa - 4876; Fungi - 5439; Plants - 1503; Viruses - 0; Other Eukaryotes - 2045 (source: NCBI BLink).  protein_id AT5G16150.3p  transcript_id AT5G16150.3  protein_id AT5G16150.3p  transcript_id AT5G16150.3  
At5g16160	chr5:005276436	0.0	C/5276436-5276576,5276173-5276236,5275939-5276092,5275813-5275855	AT5G16160.1  CDS  gene_syn T21H19.80, T21H19_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G16160.1p  transcript_id AT5G16160.1  protein_id AT5G16160.1p  transcript_id AT5G16160.1  
At5g16170	chr5:005277926	0.0	W/5277926-5278501,5279092-5279751	AT5G16170.1  CDS  gene_syn T21H19.90, T21H19_90  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF266, plant (InterPro:IPR004949); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11730.1); Has 329 Blast hits to 329 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 304; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT5G16170.1p  transcript_id AT5G16170.1  protein_id AT5G16170.1p  transcript_id AT5G16170.1  
At5g16180	chr5:005279884	0.0	W/5279884-5280696,5280777-5281110,5281502-5281632,5281727-5282071,5282163-5282319,5282422-5282717,5282812-5282898	AT5G16180.1  CDS  gene_syn ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ATCRS1, CRS1, T21H19.100, T21H19_100  gene CRS1  go_process Group II intron splicing|GO:0000373|17071648|IDA  go_function RNA splicing factor activity, transesterification mechanism|GO:0031202|17071648|IDA  product CRS1 (ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1); RNA splicing factor, transesterification mechanism  note ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1 (CRS1); FUNCTIONS IN: RNA splicing factor activity, transesterification mechanism; INVOLVED IN: Group II intron splicing; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: EMB1865 (embryo defective 1865); RNA binding (TAIR:AT3G18390.1); Has 338 Blast hits to 273 proteins in 43 species: Archae - 10; Bacteria - 12; Metazoa - 36; Fungi - 9; Plants - 232; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT5G16180.1p  transcript_id AT5G16180.1  protein_id AT5G16180.1p  transcript_id AT5G16180.1  
At5g16190	chr5:005286216	0.0	C/5286216-5286293,5286038-5286136,5285616-5285868,5285385-5285495,5284948-5285084,5284624-5284737,5284175-5284374,5283884-5284075,5283663-5283810	AT5G16190.1  CDS  gene_syn ATCSLA11, CELLULOSE SYNTHASE LIKE A11, CSLA11, T21H19.110, T21H19_110  gene ATCSLA11  function encodes a gene similar to cellulose synthase  go_process biological_process|GO:0008150||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  product ATCSLA11; cellulose synthase/ transferase, transferring glycosyl groups  note ATCSLA11; FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: ATCSLA10; cellulose synthase/ transferase, transferring glycosyl groups (TAIR:AT1G24070.1); Has 2842 Blast hits to 2837 proteins in 797 species: Archae - 99; Bacteria - 2113; Metazoa - 9; Fungi - 66; Plants - 297; Viruses - 11; Other Eukaryotes - 247 (source: NCBI BLink).  protein_id AT5G16190.1p  transcript_id AT5G16190.1  protein_id AT5G16190.1p  transcript_id AT5G16190.1  
At5g16200	chr5:005289659	0.0	C/5289659-5290150	AT5G16200.1  CDS  gene_syn T21H19.120, T21H19_120  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product 50S ribosomal protein-related  note 50S ribosomal protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G66890.1); Has 14 Blast hits to 14 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G16200.1p  transcript_id AT5G16200.1  protein_id AT5G16200.1p  transcript_id AT5G16200.1  
At5g16210	chr5:005297581	0.0	C/5297581-5297779,5296910-5297062,5296330-5296508,5295666-5295773,5295153-5295323,5294531-5295061,5294247-5294321,5294042-5294170,5293878-5293952,5293568-5293777,5293258-5293410,5292968-5293182,5292738-5292855,5292506-5292641,5292224-5292425,5292036-5292141,5291814-5291954,5291496-5291736,5290999-5291399	AT5G16210.1  CDS  gene_syn T21H19.130, T21H19_130  go_component endomembrane system|GO:0012505||IEA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product HEAT repeat-containing protein  note HEAT repeat-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), LisH dimerisation motif (InterPro:IPR006594), Armadillo-type fold (InterPro:IPR016024); Has 5435 Blast hits to 4228 proteins in 406 species: Archae - 36; Bacteria - 578; Metazoa - 2571; Fungi - 341; Plants - 173; Viruses - 14; Other Eukaryotes - 1722 (source: NCBI BLink).  protein_id AT5G16210.1p  transcript_id AT5G16210.1  protein_id AT5G16210.1p  transcript_id AT5G16210.1  
At5g16220	chr5:005299762	0.0	C/5299762-5300579,5298604-5299216	AT5G16220.1  CDS  gene_syn T21H19.140, T21H19_140  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product octicosapeptide/Phox/Bem1p (PB1) domain-containing protein  note octicosapeptide/Phox/Bem1p (PB1) domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (TAIR:AT2G01190.1); Has 247 Blast hits to 246 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 48; Fungi - 12; Plants - 175; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT5G16220.1p  transcript_id AT5G16220.1  protein_id AT5G16220.1p  transcript_id AT5G16220.1  
At5g16230	chr5:005303394	0.0	W/5303394-5303521,5304791-5305298,5305375-5305944	AT5G16230.1  CDS  gene_syn T21H19.150, T21H19_150  go_component chloroplast|GO:0009507||IEA  go_process fatty acid metabolic process|GO:0006631||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function acyl-[acyl-carrier-protein] desaturase activity|GO:0045300||IEA  go_function transition metal ion binding|GO:0046914||IEA  go_process fatty acid biosynthetic process|GO:0006633||ISS  go_function acyl-[acyl-carrier-protein] desaturase activity|GO:0045300||ISS  product acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative  note acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative; FUNCTIONS IN: acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding; INVOLVED IN: fatty acid metabolic process, fatty acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: M germinated pollen stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ribonucleotide reductase-related (InterPro:IPR012348), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078), Fatty acid desaturase, type 2 (InterPro:IPR005067); BEST Arabidopsis thaliana protein match is: acyl-[acyl-carrier-protein] desaturase/ oxidoreductase/ transition metal ion binding (TAIR:AT3G02610.1); Has 578 Blast hits to 574 proteins in 127 species: Archae - 0; Bacteria - 208; Metazoa - 2; Fungi - 0; Plants - 313; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT5G16230.1p  transcript_id AT5G16230.1  protein_id AT5G16230.1p  transcript_id AT5G16230.1  
At5g16235	chr5:005304494	0.0	C/5304494-5305828	AT5G16235.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT5G16230  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G16235.1  
At5g16240	chr5:005306981	0.0	W/5306981-5307102,5308231-5308729,5308829-5309269,5309517-5309639	AT5G16240.1  CDS  gene_syn T21H19.160, T21H19_160  go_process fatty acid metabolic process|GO:0006631||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function acyl-[acyl-carrier-protein] desaturase activity|GO:0045300||IEA  go_function transition metal ion binding|GO:0046914||IEA  go_process fatty acid biosynthetic process|GO:0006633||ISS  go_function acyl-[acyl-carrier-protein] desaturase activity|GO:0045300||ISS  product acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative  note acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative; FUNCTIONS IN: acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding; INVOLVED IN: fatty acid metabolic process, fatty acid biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonucleotide reductase-related (InterPro:IPR012348), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078), Fatty acid desaturase, type 2 (InterPro:IPR005067); BEST Arabidopsis thaliana protein match is: acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative (TAIR:AT3G02630.1); Has 575 Blast hits to 572 proteins in 129 species: Archae - 0; Bacteria - 208; Metazoa - 2; Fungi - 0; Plants - 312; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT5G16240.1p  transcript_id AT5G16240.1  protein_id AT5G16240.1p  transcript_id AT5G16240.1  
At5g16250	chr5:005310264	0.0	C/5310264-5310815	AT5G16250.1  CDS  gene_syn T21H19.170, T21H19_170  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02640.1); Has 56 Blast hits to 56 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G16250.1p  transcript_id AT5G16250.1  protein_id AT5G16250.1p  transcript_id AT5G16250.1  
At5g16260	chr5:005311363	0.0	W/5311363-5311405,5311653-5311742,5311841-5311975,5312070-5312132,5312221-5312441,5312787-5313014,5313417-5313509,5313590-5313628,5313721-5313807,5313913-5314015,5314140-5314220,5314823-5314899,5314986-5315066,5315177-5315268,5315370-5315496	AT5G16260.1  CDS  gene_syn T21H19.180, T21H19_180  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), GYF (InterPro:IPR003169); Has 1767 Blast hits to 1758 proteins in 207 species: Archae - 0; Bacteria - 82; Metazoa - 1049; Fungi - 296; Plants - 184; Viruses - 0; Other Eukaryotes - 156 (source: NCBI BLink).  protein_id AT5G16260.1p  transcript_id AT5G16260.1  protein_id AT5G16260.1p  transcript_id AT5G16260.1  
At5g16270	chr5:005316783	0.0	W/5316783-5316906,5317081-5317342,5317442-5317539,5317625-5317674,5318041-5318093,5318547-5318646,5318862-5319330,5319410-5319829,5319933-5320071,5320373-5320509,5320610-5321478,5321554-5321587,5321809-5321920,5322024-5322153,5322232-5322330	AT5G16270.1  CDS  gene_syn ARABIDOPSIS HOMOLOG OF RAD21 3, ATRAD21.3, SISTER CHROMATID COHESION 1 PROTEIN 4, SYN4, T21H19.190, T21H19_190  gene SYN4  function Encodes a SCC1/REC8 ortholog that may be involved in mitosis and may represent a mitotic cohesin.  go_component nuclear chromosome|GO:0000228||IEA  go_process sister chromatid cohesion|GO:0007062||ISS  go_function molecular_function|GO:0003674||ND  product SYN4 (SISTER CHROMATID COHESION 1 PROTEIN 4)  note SISTER CHROMATID COHESION 1 PROTEIN 4 (SYN4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: sister chromatid cohesion; LOCATED IN: nuclear chromosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rad21/Rec8 like protein, C-terminal (InterPro:IPR006909), Rad21/Rec8 like protein, N-terminal (InterPro:IPR006910); BEST Arabidopsis thaliana protein match is: SYN3 (TAIR:AT3G59550.1); Has 3710 Blast hits to 2612 proteins in 312 species: Archae - 33; Bacteria - 429; Metazoa - 1151; Fungi - 562; Plants - 201; Viruses - 32; Other Eukaryotes - 1302 (source: NCBI BLink).  protein_id AT5G16270.1p  transcript_id AT5G16270.1  protein_id AT5G16270.1p  transcript_id AT5G16270.1  
At5g16280	chr5:005331183	0.0	C/5331183-5331345,5330997-5331091,5330630-5330729,5330364-5330468,5330089-5330242,5329842-5329962,5329676-5329735,5329470-5329553,5329193-5329370,5329042-5329085,5328700-5328783,5328417-5328536,5328222-5328350,5328041-5328138,5327827-5327950,5327574-5327681,5327203-5327344,5326621-5326731,5326467-5326524,5326297-5326372,5325666-5325851,5325477-5325587,5325104-5325262,5324860-5325015,5324511-5324744,5324241-5324411,5323970-5324082,5323377-5323890	AT5G16280.1  CDS  gene_syn T21H19.200, T21H19_200  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 304 Blast hits to 222 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 183; Fungi - 73; Plants - 20; Viruses - 2; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT5G16280.1p  transcript_id AT5G16280.1  protein_id AT5G16280.1p  transcript_id AT5G16280.1  
At5g16285	chr5:005332830	0.0	C/5332830-5333102	AT5G16285.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G09650.1); Has 56 Blast hits to 56 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G16285.1p  transcript_id AT5G16285.1  protein_id AT5G16285.1p  transcript_id AT5G16285.1  
At5g16286	chr5:005333181	0.0	C/5333181-5333321	AT5G16286.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G16286.1p  transcript_id AT5G16286.1  protein_id AT5G16286.1p  transcript_id AT5G16286.1  
At5g16290	chr5:005333874	0.0	W/5333874-5334091,5334562-5334775,5334905-5334988,5335357-5335425,5335507-5335590,5336029-5336181,5336269-5336349,5336460-5336564,5336664-5336786,5336877-5337029,5337139-5337204,5337304-5337387	AT5G16290.1  CDS  gene_syn MQK4.1, MQK4_1  go_function acetolactate synthase activity|GO:0003984||IEA  go_function amino acid binding|GO:0016597||IEA  go_process branched chain family amino acid biosynthetic process|GO:0009082|10487214|TAS  product acetolactate synthase small subunit, putative  note acetolactate synthase small subunit, putative; FUNCTIONS IN: acetolactate synthase activity, amino acid binding; INVOLVED IN: branched chain family amino acid biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acetolactate synthase, small subunit (InterPro:IPR004789), Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: acetolactate synthase small subunit, putative (TAIR:AT2G31810.1); Has 8740 Blast hits to 4517 proteins in 1096 species: Archae - 146; Bacteria - 4272; Metazoa - 0; Fungi - 172; Plants - 55; Viruses - 0; Other Eukaryotes - 4095 (source: NCBI BLink).  protein_id AT5G16290.1p  transcript_id AT5G16290.1  protein_id AT5G16290.1p  transcript_id AT5G16290.1  
At5g16290	chr5:005333874	0.0	W/5333874-5334091,5334562-5334775,5334905-5334988,5335357-5335425,5335507-5335590,5336029-5336181,5336269-5336349,5336460-5336564,5336664-5336786,5336877-5337029,5337139-5337204,5337304-5337387	AT5G16290.2  CDS  gene_syn MQK4.1, MQK4_1  go_function acetolactate synthase activity|GO:0003984||IEA  go_function amino acid binding|GO:0016597||IEA  go_process branched chain family amino acid biosynthetic process|GO:0009082|10487214|TAS  product acetolactate synthase small subunit, putative  note acetolactate synthase small subunit, putative; FUNCTIONS IN: acetolactate synthase activity, amino acid binding; INVOLVED IN: branched chain family amino acid biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acetolactate synthase, small subunit (InterPro:IPR004789), Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: acetolactate synthase small subunit, putative (TAIR:AT2G31810.1); Has 8740 Blast hits to 4517 proteins in 1096 species: Archae - 146; Bacteria - 4272; Metazoa - 0; Fungi - 172; Plants - 55; Viruses - 0; Other Eukaryotes - 4095 (source: NCBI BLink).  protein_id AT5G16290.2p  transcript_id AT5G16290.2  protein_id AT5G16290.2p  transcript_id AT5G16290.2  
At5g16300	chr5:005338119	0.0	W/5338119-5340350,5340635-5340826,5341044-5341324,5341437-5341616,5341779-5341845,5342034-5342186	AT5G16300.2  CDS  gene_syn MQK4.2, MQK4_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vps51/Vps67 (InterPro:IPR014812); Has 199 Blast hits to 182 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 34; Plants - 24; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT5G16300.2p  transcript_id AT5G16300.2  protein_id AT5G16300.2p  transcript_id AT5G16300.2  
At5g16300	chr5:005338119	0.0	W/5338119-5340350,5340635-5340826,5341044-5341324,5341437-5341616,5341779-5341947,5342034-5342186	AT5G16300.1  CDS  gene_syn MQK4.2, MQK4_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vps51/Vps67 (InterPro:IPR014812); Has 204 Blast hits to 183 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 127; Fungi - 34; Plants - 24; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT5G16300.1p  transcript_id AT5G16300.1  protein_id AT5G16300.1p  transcript_id AT5G16300.1  
At5g16300	chr5:005338119	0.0	W/5338119-5340350,5340635-5340826,5341044-5341324,5341437-5341616,5341779-5341953,5342039-5342068	AT5G16300.3  CDS  gene_syn MQK4.2, MQK4_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vps51/Vps67 (InterPro:IPR014812); Has 201 Blast hits to 182 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 34; Plants - 23; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT5G16300.3p  transcript_id AT5G16300.3  protein_id AT5G16300.3p  transcript_id AT5G16300.3  
At5g16310	chr5:005344123	0.0	C/5344123-5344153,5343628-5343721,5343436-5343538,5342579-5343355	AT5G16310.1  CDS  gene_syn MQK4.3, MQK4_3, UBIQUITIN C-TERMINAL HYDROLASE 1, UCH1  gene UCH1  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_component intracellular|GO:0005622||ISS  go_component nucleus|GO:0005634|17559514|IDA  go_component cytoplasm|GO:0005737|17559514|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_process shoot morphogenesis|GO:0010016|17559514|IGI  go_process leaf development|GO:0048366|17559514|IGI  go_process shoot development|GO:0048367|17559514|IGI  go_function ubiquitin thiolesterase activity|GO:0004221||ISS  product UCH1; ubiquitin thiolesterase  note UCH1; FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: shoot development, shoot morphogenesis, leaf development, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus, intracellular, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (InterPro:IPR001578), Ubiquitinyl hydrolase, UCH37 type (InterPro:IPR017390); BEST Arabidopsis thaliana protein match is: UCH2; ubiquitin thiolesterase/ ubiquitin-specific protease (TAIR:AT1G65650.1); Has 931 Blast hits to 925 proteins in 172 species: Archae - 0; Bacteria - 2; Metazoa - 511; Fungi - 225; Plants - 76; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT5G16310.1p  transcript_id AT5G16310.1  protein_id AT5G16310.1p  transcript_id AT5G16310.1  
At5g16320	chr5:005344507	0.0	W/5344507-5345919	AT5G16320.1  CDS  gene_syn FRIGIDA LIKE 1, FRL1, MQK4.4, MQK4_4  gene FRL1  function family member of FRI-related genes that is required for the winter-annual habit. Genbank accession BK004884  go_component cellular_component|GO:0005575||ND  product FRL1 (FRIGIDA LIKE 1)  note FRIGIDA LIKE 1 (FRL1); LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRL2 (FRIGIDA LIKE 2) (TAIR:AT1G31814.1); Has 810 Blast hits to 770 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 810; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G16320.1p  transcript_id AT5G16320.1  protein_id AT5G16320.1p  transcript_id AT5G16320.1  
At5g16330	chr5:005346860	0.0	C/5346860-5346977,5346163-5346773	AT5G16330.1  CDS  gene_syn MQK4.5, MQK4_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NC domain-containing protein  note NC domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NC (InterPro:IPR007053); BEST Arabidopsis thaliana protein match is: NC domain-containing protein (TAIR:AT3G02700.1); Has 93 Blast hits to 92 proteins in 24 species: Archae - 0; Bacteria - 21; Metazoa - 2; Fungi - 0; Plants - 66; Viruses - 2; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G16330.1p  transcript_id AT5G16330.1  protein_id AT5G16330.1p  transcript_id AT5G16330.1  
At5g16336	chr5:005348417	0.0	C/5348417-5348774	AT5G16336.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G16360; NC domain-containing protein  
At5g16340	chr5:005349255	0.0	C/5349255-5350907	AT5G16340.1  CDS  gene_syn MQK4.6, MQK4_6  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  product AMP-binding protein, putative  note AMP-binding protein, putative; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AAE5 (ACYL ACTIVATING ENZYME 5); catalytic (TAIR:AT5G16370.1); Has 50913 Blast hits to 47428 proteins in 2194 species: Archae - 554; Bacteria - 27741; Metazoa - 2839; Fungi - 2171; Plants - 1249; Viruses - 1; Other Eukaryotes - 16358 (source: NCBI BLink).  protein_id AT5G16340.1p  transcript_id AT5G16340.1  protein_id AT5G16340.1p  transcript_id AT5G16340.1  
At5g16350	chr5:005352702	0.0	W/5352702-5352875,5353169-5353753,5353857-5353923,5354072-5354190,5354286-5354495,5354560-5354697,5354782-5354955	AT5G16350.1  CDS  gene_syn MQK4.7, MQK4_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1298 (InterPro:IPR009721), Uncharacterised protein family UPF0089 (InterPro:IPR004255); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12420.1); Has 652 Blast hits to 646 proteins in 102 species: Archae - 2; Bacteria - 515; Metazoa - 5; Fungi - 2; Plants - 109; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT5G16350.1p  transcript_id AT5G16350.1  protein_id AT5G16350.1p  transcript_id AT5G16350.1  
At5g16360	chr5:005356102	0.0	C/5356102-5356195,5355236-5355993	AT5G16360.1  CDS  gene_syn MQK4.8, MQK4_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NC domain-containing protein  note NC domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NC (InterPro:IPR007053); BEST Arabidopsis thaliana protein match is: NC domain-containing protein (TAIR:AT3G02700.1); Has 108 Blast hits to 107 proteins in 32 species: Archae - 0; Bacteria - 29; Metazoa - 7; Fungi - 0; Plants - 66; Viruses - 2; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G16360.1p  transcript_id AT5G16360.1  protein_id AT5G16360.1p  transcript_id AT5G16360.1  
At5g16370	chr5:005356823	0.0	C/5356823-5358481	AT5G16370.1  CDS  gene_syn AAE5, ACYL ACTIVATING ENZYME 5, MQK4.9, MQK4_9  gene AAE5  go_component peroxisome|GO:0005777|17951448|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  product AAE5 (ACYL ACTIVATING ENZYME 5); catalytic  note ACYL ACTIVATING ENZYME 5 (AAE5); FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-binding protein, putative (TAIR:AT5G16340.1); Has 50403 Blast hits to 47033 proteins in 2180 species: Archae - 558; Bacteria - 27346; Metazoa - 2865; Fungi - 2162; Plants - 1250; Viruses - 1; Other Eukaryotes - 16221 (source: NCBI BLink).  protein_id AT5G16370.1p  transcript_id AT5G16370.1  protein_id AT5G16370.1p  transcript_id AT5G16370.1  
At5g16375	chr5:005358916	0.0	W/5358916-5358997	AT5G16375.1  tRNA  gene_syn 67633.TRNA-SER-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT5G16375.1  
At5g16380	chr5:005360125	0.0	C/5360125-5360613,5359730-5359828	AT5G16380.1  CDS  gene_syn MQK4.11, MQK4_11  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G07470.1); Has 277 Blast hits to 277 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 276; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G16380.1p  transcript_id AT5G16380.1  protein_id AT5G16380.1p  transcript_id AT5G16380.1  
At5g16390	chr5:005362868	0.0	C/5362868-5363020,5362419-5362463,5362174-5362334,5361780-5362101,5361554-5361637	AT5G16390.2  CDS  gene_syn BCCP, BCCP-1, BCCP1, BIOTIN CARBOXYL CARRIER PROTEIN, BIOTIN CARBOXYL-CARRIER PROTEIN, BIOTIN CARBOXYL-CARRIER PROTEIN 1, CAC1, CAC1-A, CAC1A, CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1, MQK4.12, MQK4_12  gene CAC1  function Encodes for the biotin carboxyl-carrier subunit of the multi-enzyme plastidial acetyl-coenzyme A carboxylase complex.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|11299381|IDA  go_component chloroplast|GO:0009507|7480350|ISS  go_process fatty acid biosynthetic process|GO:0006633|7480350|TAS  go_process fatty acid biosynthetic process|GO:0006633||ISS  go_function acetyl-CoA carboxylase activity|GO:0003989|7480350|IDA  go_function biotin binding|GO:0009374|11299381|IDA  product CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1); acetyl-CoA carboxylase/ biotin binding  note BIOTIN CARBOXYL-CARRIER PROTEIN 1 (BCCP-1); FUNCTIONS IN: acetyl-CoA carboxylase activity, biotin binding; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acetyl-CoA biotin carboxyl carrier (InterPro:IPR001249), Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2); biotin binding (TAIR:AT5G15530.1); Has 8075 Blast hits to 6296 proteins in 1265 species: Archae - 19; Bacteria - 2908; Metazoa - 634; Fungi - 331; Plants - 757; Viruses - 230; Other Eukaryotes - 3196 (source: NCBI BLink).  protein_id AT5G16390.2p  transcript_id AT5G16390.2  protein_id AT5G16390.2p  transcript_id AT5G16390.2  
At5g16390	chr5:005362868	0.0	C/5362868-5363020,5362419-5362463,5362174-5362334,5361780-5362101,5361566-5361637,5361272-5361337,5361098-5361121	AT5G16390.1  CDS  gene_syn BCCP, BCCP-1, BCCP1, BIOTIN CARBOXYL CARRIER PROTEIN, BIOTIN CARBOXYL-CARRIER PROTEIN, BIOTIN CARBOXYL-CARRIER PROTEIN 1, CAC1, CAC1-A, CAC1A, CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1, MQK4.12, MQK4_12  gene CAC1  function Encodes for the biotin carboxyl-carrier subunit of the multi-enzyme plastidial acetyl-coenzyme A carboxylase complex.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|11299381|IDA  go_component chloroplast|GO:0009507|7480350|ISS  go_process fatty acid biosynthetic process|GO:0006633|7480350|TAS  go_process fatty acid biosynthetic process|GO:0006633||ISS  go_function acetyl-CoA carboxylase activity|GO:0003989|7480350|IDA  go_function biotin binding|GO:0009374|11299381|IDA  product CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1); acetyl-CoA carboxylase/ biotin binding  note CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1 (CAC1); FUNCTIONS IN: acetyl-CoA carboxylase activity, biotin binding; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Biotin-binding site (InterPro:IPR001882), Single hybrid motif (InterPro:IPR011053), Acetyl-CoA biotin carboxyl carrier (InterPro:IPR001249), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2); biotin binding (TAIR:AT5G15530.1); Has 9554 Blast hits to 7768 proteins in 1351 species: Archae - 67; Bacteria - 3888; Metazoa - 725; Fungi - 338; Plants - 783; Viruses - 230; Other Eukaryotes - 3523 (source: NCBI BLink).  protein_id AT5G16390.1p  transcript_id AT5G16390.1  protein_id AT5G16390.1p  transcript_id AT5G16390.1  
At5g16400	chr5:005364927	0.0	C/5364927-5365249,5364118-5364217,5363905-5364039	AT5G16400.1  CDS  gene_syn ATF2, THIOREDOXIN F2, TRXF2  gene ATF2  function Encodes an f-type thioredoxin (Trx-f2) localized in chloroplast stroma.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid|GO:0009534|19259774|IDA  go_component chloroplast stroma|GO:0009570|19259774|IDA  go_process positive regulation of catalytic activity|GO:0043085|11169189|IDA  go_function enzyme activator activity|GO:0008047|11169189|IDA  product ATF2; enzyme activator  note ATF2; FUNCTIONS IN: enzyme activator activity; INVOLVED IN: positive regulation of catalytic activity; LOCATED IN: chloroplast stroma, chloroplast, chloroplast thylakoid; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: TRXF1 (THIOREDOXIN F-TYPE 1); enzyme activator (TAIR:AT3G02730.1); Has 10754 Blast hits to 10303 proteins in 1684 species: Archae - 133; Bacteria - 4409; Metazoa - 1651; Fungi - 679; Plants - 1032; Viruses - 3; Other Eukaryotes - 2847 (source: NCBI BLink).  protein_id AT5G16400.1p  transcript_id AT5G16400.1  protein_id AT5G16400.1p  transcript_id AT5G16400.1  
At5g16410	chr5:005366892	0.0	C/5366892-5367383,5365685-5366635	AT5G16410.1  CDS  gene_syn MQK4.14, MQK4_14  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT1G78990.1); Has 1166 Blast hits to 1161 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 12; Plants - 1153; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G16410.1p  transcript_id AT5G16410.1  protein_id AT5G16410.1p  transcript_id AT5G16410.1  
At5g16420	chr5:005368034	0.0	W/5368034-5369641	AT5G16420.1  CDS  gene_syn MQK4.15, MQK4_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: MEE40 (maternal effect embryo arrest 40) (TAIR:AT3G53700.1); Has 19197 Blast hits to 5826 proteins in 183 species: Archae - 5; Bacteria - 20; Metazoa - 443; Fungi - 426; Plants - 17523; Viruses - 0; Other Eukaryotes - 780 (source: NCBI BLink).  protein_id AT5G16420.1p  transcript_id AT5G16420.1  protein_id AT5G16420.1p  transcript_id AT5G16420.1  
At5g16430	chr5:005370350	0.0	W/5370350-5370607	AT5G16430.1  CDS  gene_syn MQK4.16, MQK4_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT5G45730.1); Has 140 Blast hits to 105 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 140; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G16430.1p  transcript_id AT5G16430.1  protein_id AT5G16430.1p  transcript_id AT5G16430.1  
At5g16440	chr5:005371765	0.0	W/5371765-5372000,5372303-5372358,5372510-5372601,5372909-5373011,5373102-5373239,5373325-5373575	AT5G16440.1  CDS  gene_syn IPP1, ISOPENTENYL DIPHOSPHATE ISOMERASE, ISOPENTENYL DIPHOSPHATE ISOMERASE 1, MQK4.17, MQK4_17  gene IPP1  function Encodes a protein with isopentenyl diphosphate:dimethylallyl diphosphate isomerase activity. There is genetic evidence that it functions in the mevalonate, but not the MEP biosynthetic pathway.  go_component chloroplast|GO:0009507|18431481|IDA  go_component cytosol|GO:0005829|18319397|IDA  go_component plastid|GO:0009536|18319397|IDA  go_process isoprenoid biosynthetic process|GO:0008299|9484444|TAS  go_process isopentenyl diphosphate biosynthetic process|GO:0009240|18319397|IMP  go_process chlorophyll biosynthetic process|GO:0015995|9484444|TAS  go_function isopentenyl-diphosphate delta-isomerase activity|GO:0004452|18319397|IMP  go_function isopentenyl-diphosphate delta-isomerase activity|GO:0004452|9484444|IDA  product IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1); isopentenyl-diphosphate delta-isomerase  note ISOPENTENYL DIPHOSPHATE ISOMERASE 1 (IPP1); FUNCTIONS IN: isopentenyl-diphosphate delta-isomerase activity; INVOLVED IN: chlorophyll biosynthetic process, isoprenoid biosynthetic process, isopentenyl diphosphate biosynthetic process; LOCATED IN: cytosol, chloroplast, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), NUDIX hydrolase, core (InterPro:IPR000086), Isopentenyl-diphosphate delta-isomerase, type 1 (InterPro:IPR011876); BEST Arabidopsis thaliana protein match is: IPP2 (ISOPENTENYL PYROPHOSPHATE:DIMETHYLALLYL PYROPHOSPHATE ISOMERASE 2); isopentenyl-diphosphate delta-isomerase (TAIR:AT3G02780.1); Has 1513 Blast hits to 1512 proteins in 470 species: Archae - 21; Bacteria - 641; Metazoa - 179; Fungi - 97; Plants - 127; Viruses - 0; Other Eukaryotes - 448 (source: NCBI BLink).  protein_id AT5G16440.1p  transcript_id AT5G16440.1  protein_id AT5G16440.1p  transcript_id AT5G16440.1  
At5g16450	chr5:005374357	0.0	W/5374357-5374540,5375026-5375342	AT5G16450.1  CDS  gene_syn MQK4.18, MQK4_18  go_process regulation of RNA metabolic process|GO:0051252||IEA  go_function ribonuclease inhibitor activity|GO:0008428||IEA  go_component cellular_component|GO:0005575||ND  product dimethylmenaquinone methyltransferase family protein  note dimethylmenaquinone methyltransferase family protein; FUNCTIONS IN: ribonuclease inhibitor activity; INVOLVED IN: regulation of RNA metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (InterPro:IPR005493), Ribonuclease E inhibitor RraA (InterPro:IPR010203); BEST Arabidopsis thaliana protein match is: dimethylmenaquinone methyltransferase family protein (TAIR:AT3G02770.1); Has 2317 Blast hits to 2317 proteins in 657 species: Archae - 46; Bacteria - 1650; Metazoa - 2; Fungi - 38; Plants - 58; Viruses - 0; Other Eukaryotes - 523 (source: NCBI BLink).  protein_id AT5G16450.1p  transcript_id AT5G16450.1  protein_id AT5G16450.1p  transcript_id AT5G16450.1  
At5g16450	chr5:005374357	0.0	W/5374357-5374540,5375026-5375342	AT5G16450.2  CDS  gene_syn MQK4.18, MQK4_18  go_process regulation of RNA metabolic process|GO:0051252||IEA  go_function ribonuclease inhibitor activity|GO:0008428||IEA  go_component cellular_component|GO:0005575||ND  product dimethylmenaquinone methyltransferase family protein  note dimethylmenaquinone methyltransferase family protein; FUNCTIONS IN: ribonuclease inhibitor activity; INVOLVED IN: regulation of RNA metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (InterPro:IPR005493), Ribonuclease E inhibitor RraA (InterPro:IPR010203); BEST Arabidopsis thaliana protein match is: dimethylmenaquinone methyltransferase family protein (TAIR:AT3G02770.1); Has 2317 Blast hits to 2317 proteins in 657 species: Archae - 46; Bacteria - 1650; Metazoa - 2; Fungi - 38; Plants - 58; Viruses - 0; Other Eukaryotes - 523 (source: NCBI BLink).  protein_id AT5G16450.2p  transcript_id AT5G16450.2  protein_id AT5G16450.2p  transcript_id AT5G16450.2  
At5g16453	chr5:005375862	0.0	C/5375862-5375919,5375543-5375751	AT5G16453.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08315.1); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G16453.1p  transcript_id AT5G16453.1  protein_id AT5G16453.1p  transcript_id AT5G16453.1  
At5g16460	chr5:005377988	0.0	C/5377988-5378533,5377085-5377645	AT5G16460.1  CDS  gene_syn MQK4.19, MQK4_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Adipose-regulatory protein, Seipin (InterPro:IPR009617); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29760.1); Has 150 Blast hits to 150 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 103; Fungi - 16; Plants - 29; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G16460.1p  transcript_id AT5G16460.1  protein_id AT5G16460.1p  transcript_id AT5G16460.1  
At5g16470	chr5:005379516	0.0	W/5379516-5379830	AT5G16470.1  CDS  gene_syn MQK4.20, MQK4_20  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT3G02790.1); Has 57 Blast hits to 57 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G16470.1p  transcript_id AT5G16470.1  protein_id AT5G16470.1p  transcript_id AT5G16470.1  
At5g16480	chr5:005382470	0.0	C/5382470-5382618,5382114-5382207,5381829-5381886,5381701-5381744,5381334-5381603	AT5G16480.1  CDS  gene_syn MQK4.21, MQK4_21  go_process dephosphorylation|GO:0016311||IEA  go_function protein tyrosine phosphatase activity|GO:0004725||IEA  go_function phosphatase activity|GO:0016791||IEA  go_component cellular_component|GO:0005575||ND  go_function phosphoprotein phosphatase activity|GO:0004721||ISS  product tyrosine specific protein phosphatase family protein  note tyrosine specific protein phosphatase family protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Protein-tyrosine phosphatase, SIW14-like (InterPro:IPR004861); BEST Arabidopsis thaliana protein match is: phosphatase/ phosphoprotein phosphatase/ protein tyrosine phosphatase (TAIR:AT3G02800.1); Has 465 Blast hits to 450 proteins in 106 species: Archae - 0; Bacteria - 41; Metazoa - 7; Fungi - 250; Plants - 83; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT5G16480.1p  transcript_id AT5G16480.1  protein_id AT5G16480.1p  transcript_id AT5G16480.1  
At5g16486	chr5:005383597	0.0	C/5383597-5384226	AT5G16486.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G04650.1); Has 335 Blast hits to 332 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 335; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G16486.1p  transcript_id AT5G16486.1  protein_id AT5G16486.1p  transcript_id AT5G16486.1  
At5g16490	chr5:005385088	0.0	C/5385088-5385205,5384859-5384987,5384468-5384682	AT5G16490.1  CDS  gene_syn MQK4.23, MQK4_23, RIC4, ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4  gene RIC4  function encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). It interacts with Rop1 and is involved in pollen tube growth and function, and exocytosis in the pollen tube tip. Protein most similar to RIC2 (family subgroup V). Gene is expressed in all tissues examined.Interacts with ROP2 during pavement cell morphogenesis and with ROP1 to promote apical F-actin assembly.  go_component apical plasma membrane|GO:0016324|11752391|IDA  go_component apical plasma membrane|GO:0016324|15824136|IDA  go_process pollen tube growth|GO:0009860|11752391|IMP  go_process pollen tube growth|GO:0009860|15824136|IMP  go_process cellulose microfibril organization|GO:0010215|15766531|IMP  go_process regulation of exocytosis|GO:0017157|18591430|IDA  go_process regulation of actin filament polymerization|GO:0030833|15824136|IMP  go_process establishment of vesicle localization|GO:0051650|18591430|IDA  go_function protein binding|GO:0005515|15766531|IPI  go_function protein binding|GO:0005515|15824136|IPI  product RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4); protein binding  note ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4 (RIC4); FUNCTIONS IN: protein binding; INVOLVED IN: regulation of actin filament polymerization, pollen tube growth, cellulose microfibril organization, regulation of exocytosis, establishment of vesicle localization; LOCATED IN: apical plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095); BEST Arabidopsis thaliana protein match is: RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10) (TAIR:AT4G04900.1); Has 76 Blast hits to 76 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G16490.1p  transcript_id AT5G16490.1  protein_id AT5G16490.1p  transcript_id AT5G16490.1  
At5g16500	chr5:005388886	0.0	C/5388886-5389003,5388599-5388774,5388322-5388511,5387845-5388239,5386733-5387764	AT5G16500.1  CDS  gene_syn MQK4.24, MQK4_24  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G02810.1); Has 160932 Blast hits to 118420 proteins in 3776 species: Archae - 191; Bacteria - 16677; Metazoa - 67696; Fungi - 13729; Plants - 21384; Viruses - 1121; Other Eukaryotes - 40134 (source: NCBI BLink).  protein_id AT5G16500.1p  transcript_id AT5G16500.1  protein_id AT5G16500.1p  transcript_id AT5G16500.1  
At5g16505	chr5:005390006	0.0	W/5390006-5392383	AT5G16505.2  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 1.4e-59 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  transcript_id AT5G16505.2  
At5g16505	chr5:005390026	0.0	W/5390026-5392383	AT5G16505.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 1.4e-59 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At5g16510	chr5:005393296	0.0	W/5393296-5394342	AT5G16510.1  CDS  gene_syn MQK4.26, MQK4_26  go_component Golgi apparatus|GO:0005794||IEA  go_component plant-type cell wall|GO:0009505||IEA  go_component cell junction|GO:0030054||IEA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function transferase activity, transferring hexosyl groups|GO:0016758||IEA  product reversibly glycosylated polypeptide, putative  note reversibly glycosylated polypeptide, putative; FUNCTIONS IN: transferase activity, transferring hexosyl groups; INVOLVED IN: response to salt stress; LOCATED IN: Golgi apparatus, cell junction, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-1,4-glucan-protein synthase, UDP-forming (InterPro:IPR004901); BEST Arabidopsis thaliana protein match is: RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1); cellulose synthase (UDP-forming) (TAIR:AT3G02230.1); Has 134 Blast hits to 133 proteins in 31 species: Archae - 12; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G16510.1p  transcript_id AT5G16510.1  protein_id AT5G16510.1p  transcript_id AT5G16510.1  
At5g16510	chr5:005393296	0.0	W/5393296-5394342	AT5G16510.2  CDS  gene_syn MQK4.26, MQK4_26  go_component Golgi apparatus|GO:0005794||IEA  go_component plant-type cell wall|GO:0009505||IEA  go_component cell junction|GO:0030054||IEA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function transferase activity, transferring hexosyl groups|GO:0016758||IEA  product reversibly glycosylated polypeptide, putative  note reversibly glycosylated polypeptide, putative; FUNCTIONS IN: transferase activity, transferring hexosyl groups; INVOLVED IN: response to salt stress; LOCATED IN: cell junction, Golgi apparatus, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-1,4-glucan-protein synthase, UDP-forming (InterPro:IPR004901); BEST Arabidopsis thaliana protein match is: RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1); cellulose synthase (UDP-forming) (TAIR:AT3G02230.1); Has 134 Blast hits to 133 proteins in 31 species: Archae - 12; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G16510.2p  transcript_id AT5G16510.2  protein_id AT5G16510.2p  transcript_id AT5G16510.2  
At5g16520	chr5:005397006	0.0	C/5397006-5397371,5396829-5396920,5396060-5396760,5395864-5395934,5395608-5395697,5395342-5395515,5395111-5395261,5394740-5394921	AT5G16520.1  CDS  gene_syn MQK4.27, MQK4_27  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 15 Blast hits to 15 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G16520.1p  transcript_id AT5G16520.1  protein_id AT5G16520.1p  transcript_id AT5G16520.1  
At5g16530	chr5:005400735	0.0	W/5400735-5401396,5401905-5401990,5402084-5402241,5402396-5402472,5402554-5402626	AT5G16530.1  CDS  gene_syn MQK4.28, MQK4_28, PIN-FORMED 5, PIN5  gene PIN5  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process auxin polar transport|GO:0009926||ISS  go_function transporter activity|GO:0005215||ISS  go_function auxin:hydrogen symporter activity|GO:0009672||ISS  product PIN5 (PIN-FORMED 5); auxin:hydrogen symporter/ transporter  note PIN-FORMED 5 (PIN5); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity; INVOLVED IN: auxin polar transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: PIN8 (PIN-FORMED 8); auxin:hydrogen symporter/ transporter (TAIR:AT5G15100.1); Has 390 Blast hits to 248 proteins in 38 species: Archae - 2; Bacteria - 16; Metazoa - 5; Fungi - 0; Plants - 341; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT5G16530.1p  transcript_id AT5G16530.1  protein_id AT5G16530.1p  transcript_id AT5G16530.1  
At5g16540	chr5:005403437	0.0	W/5403437-5403494,5403593-5403753,5403878-5403940,5404030-5404149,5404226-5404672,5404777-5405034	AT5G16540.2  CDS  gene_syn MQK4.29, MQK4_29, ZFN3, ZINC FINGER NUCLEASE 3  gene ZFN3  function Encodes a zinc finger protein.  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function DNA binding|GO:0003677|15677315|TAS  go_function nuclease activity|GO:0004518|15677315|TAS  product ZFN3 (ZINC FINGER NUCLEASE 3); DNA binding / nuclease/ nucleic acid binding  note ZINC FINGER NUCLEASE 3 (ZFN3); FUNCTIONS IN: DNA binding, nucleic acid binding, nuclease activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: ZFN1 (ZINC FINGER PROTEIN 1); DNA binding / nuclease/ nucleic acid binding (TAIR:AT3G02830.1); Has 854 Blast hits to 464 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 175; Fungi - 98; Plants - 526; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT5G16540.2p  transcript_id AT5G16540.2  protein_id AT5G16540.2p  transcript_id AT5G16540.2  
At5g16540	chr5:005403437	0.0	W/5403437-5403494,5403593-5403753,5403878-5403940,5404030-5404149,5404226-5404693,5404777-5405034	AT5G16540.1  CDS  gene_syn MQK4.29, MQK4_29, ZFN3, ZINC FINGER NUCLEASE 3  gene ZFN3  function Encodes a zinc finger protein.  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function DNA binding|GO:0003677|15677315|TAS  go_function nuclease activity|GO:0004518|15677315|TAS  product ZFN3 (ZINC FINGER NUCLEASE 3); DNA binding / nuclease/ nucleic acid binding  note ZINC FINGER NUCLEASE 3 (ZFN3); FUNCTIONS IN: DNA binding, nucleic acid binding, nuclease activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: ZFN1 (ZINC FINGER PROTEIN 1); DNA binding / nuclease/ nucleic acid binding (TAIR:AT3G02830.1); Has 851 Blast hits to 449 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 159; Fungi - 108; Plants - 530; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT5G16540.1p  transcript_id AT5G16540.1  protein_id AT5G16540.1p  transcript_id AT5G16540.1  
At5g16540	chr5:005403598	0.0	W/5403598-5403753,5403878-5403940,5404030-5404149,5404226-5404693,5404777-5405034	AT5G16540.3  CDS  gene_syn MQK4.29, MQK4_29, ZFN3, ZINC FINGER NUCLEASE 3  gene ZFN3  function Encodes a zinc finger protein.  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function DNA binding|GO:0003677|15677315|TAS  go_function nuclease activity|GO:0004518|15677315|TAS  product ZFN3 (ZINC FINGER NUCLEASE 3); DNA binding / nuclease/ nucleic acid binding  note ZINC FINGER NUCLEASE 3 (ZFN3); FUNCTIONS IN: DNA binding, nucleic acid binding, nuclease activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: ZFN1 (ZINC FINGER PROTEIN 1); DNA binding / nuclease/ nucleic acid binding (TAIR:AT3G02830.1); Has 835 Blast hits to 438 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 159; Fungi - 99; Plants - 523; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT5G16540.3p  transcript_id AT5G16540.3  protein_id AT5G16540.3p  transcript_id AT5G16540.3  
At5g16550	chr5:005405526	0.0	W/5405526-5405879,5406137-5406374,5406484-5406641	AT5G16550.1  CDS  gene_syn MQK4.30, MQK4_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G16550.1p  transcript_id AT5G16550.1  protein_id AT5G16550.1p  transcript_id AT5G16550.1  
At5g16560	chr5:005410363	0.0	C/5410363-5411092,5410182-5410258,5409254-5409299,5408229-5408376,5407566-5407674,5407365-5407466	AT5G16560.1  CDS  gene_syn KAN, KAN1, KANADI, KANADI 1, MQK4.31, MQK4_31  gene KAN  function Encodes a KANADI protein (KAN) that regulates organ polarity in Arabidopsis. KAN is required for abaxial identity in both leaves and carpels, and encodes a nuclear-localized protein in the GARP family of putative transcription factors. Together with KAN2, this gene appears to be involved in the development of the carpel and the outer integument of the ovule.Along with KAN2 and KAN4, KAN1 appears to be required for proper regulation of PIN1 in early embryogenesis.  go_component nucleus|GO:0005634|11395775|IDA  go_component nucleus|GO:0005634|11395775|ISS  go_process organ morphogenesis|GO:0009887|11395775|IMP  go_process adaxial/abaxial axis specification|GO:0009943|18849474|IMP  go_process polarity specification of adaxial/abaxial axis|GO:0009944|17601823|IGI  go_process radial pattern formation|GO:0009956|14561401|IMP  go_process xylem and phloem pattern formation|GO:0010051|14561401|IMP  go_process abaxial cell fate specification|GO:0010158|16199616|IMP  go_process carpel development|GO:0048440|16623911|IGI  go_process ovule development|GO:0048481|16623911|IGI  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11395775|ISS  product KAN (KANADI); transcription factor  note KANADI (KAN); FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 8 processes; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KAN2 (KANADI 2); DNA binding / transcription factor (TAIR:AT1G32240.1); Has 1061 Blast hits to 1059 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 101; Fungi - 22; Plants - 870; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT5G16560.1p  transcript_id AT5G16560.1  protein_id AT5G16560.1p  transcript_id AT5G16560.1  
At5g16567	chr5:005418891	0.0	W/5418891-5419085	AT5G16567.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G16567.1p  transcript_id AT5G16567.1  protein_id AT5G16567.1p  transcript_id AT5G16567.1  
At5g16570	chr5:005424450	0.0	C/5424450-5424523,5424055-5424094,5423835-5423938,5423694-5423742,5423489-5423595,5423089-5423176,5422863-5422991,5422699-5422773,5422558-5422611,5422441-5422478,5422200-5422359,5421898-5422050	AT5G16570.1  CDS  gene_syn GLN1;4, MTG13.1  gene GLN1;4  function Encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammonium  go_component cytosol|GO:0005829|16338958|NAS  go_process nitrate assimilation|GO:0042128|16338958|TAS  go_function glutamate-ammonia ligase activity|GO:0004356|14757761|IDA  go_function glutamate-ammonia ligase activity|GO:0004356||ISS  product GLN1;4; glutamate-ammonia ligase  note GLN1;4; FUNCTIONS IN: glutamate-ammonia ligase activity; INVOLVED IN: nitrate assimilation; LOCATED IN: cytosol; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine synthetase, catalytic region (InterPro:IPR008146), Glutamine synthetase, beta-Grasp (InterPro:IPR008147), Glutamine synthetase/guanido kinase, catalytic region (InterPro:IPR014746); BEST Arabidopsis thaliana protein match is: ATGSR1; copper ion binding / glutamate-ammonia ligase (TAIR:AT5G37600.1); Has 7053 Blast hits to 7050 proteins in 2012 species: Archae - 119; Bacteria - 3006; Metazoa - 377; Fungi - 167; Plants - 1090; Viruses - 3; Other Eukaryotes - 2291 (source: NCBI BLink).  protein_id AT5G16570.1p  transcript_id AT5G16570.1  protein_id AT5G16570.1p  transcript_id AT5G16570.1  
At5g16580	chr5:005427397	0.0	C/5427397-5427472,5427062-5427297,5426854-5426972,5426536-5426759,5426407-5426432,5426195-5426282,5426006-5426102,5425889-5425922	AT5G16580.1  CDS  gene_syn BETA GLUCOSIDASE 2, BGLU2, MTG13.2, MTG13_2  gene BGLU2  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU2 (BETA GLUCOSIDASE 2); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 2 (BGLU2); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU3 (BETA GLUCOSIDASE 2); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT4G22100.1); Has 4362 Blast hits to 4206 proteins in 715 species: Archae - 64; Bacteria - 2580; Metazoa - 537; Fungi - 115; Plants - 751; Viruses - 0; Other Eukaryotes - 315 (source: NCBI BLink).  protein_id AT5G16580.1p  transcript_id AT5G16580.1  protein_id AT5G16580.1p  transcript_id AT5G16580.1  
At5g16590	chr5:005431862	0.0	W/5431862-5433146,5433236-5433553,5433647-5433921	AT5G16590.1  CDS  gene_syn LRR1, Leucine rich repeat protein 1, MTG13.3, MTG13_3  gene LRR1  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component plasma membrane|GO:0005886|17397506|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_process response to symbiotic fungus|GO:0009610|17397506|IEP  go_process response to symbiotic fungus|GO:0009610|18248598|IEP  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product LRR1; ATP binding / kinase/ protein serine/threonine kinase  note LRR1; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation, response to symbiotic fungus; LOCATED IN: plasma membrane, membrane, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT3G02880.1); Has 93310 Blast hits to 69709 proteins in 2523 species: Archae - 48; Bacteria - 5576; Metazoa - 30626; Fungi - 4456; Plants - 40588; Viruses - 221; Other Eukaryotes - 11795 (source: NCBI BLink).  protein_id AT5G16590.1p  transcript_id AT5G16590.1  protein_id AT5G16590.1p  transcript_id AT5G16590.1  
At5g16600	chr5:005438291	0.0	W/5438291-5438423,5439001-5439130,5439494-5440214	AT5G16600.1  CDS  gene_syn AtMYB43, MTG13.12, MTG13_12, MYB43, myb domain protein 43  gene MYB43  function Encodes a putative transcription factor (MYB43).  go_component nucleus|GO:0005634|18952777|IEP  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB43 (myb domain protein 43); DNA binding / transcription factor  note myb domain protein 43 (MYB43); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to abscisic acid stimulus, regulation of transcription, DNA-dependent, regulation of secondary cell wall thickening; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB20 (myb domain protein 20); DNA binding / transcription factor (TAIR:AT1G66230.1); Has 6120 Blast hits to 5737 proteins in 345 species: Archae - 0; Bacteria - 0; Metazoa - 592; Fungi - 233; Plants - 3828; Viruses - 4; Other Eukaryotes - 1463 (source: NCBI BLink).  protein_id AT5G16600.1p  transcript_id AT5G16600.1  protein_id AT5G16600.1p  transcript_id AT5G16600.1  
At5g16610	chr5:005447658	0.0	C/5447658-5447665,5447197-5447230,5446363-5447108,5446218-5446266,5446011-5446136,5445834-5445938,5445664-5445755,5445439-5445592,5445068-5445343	AT5G16610.1  CDS  gene_syn MTG13.5, MTG13_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 20 Blast hits to 20 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G16610.1p  transcript_id AT5G16610.1  protein_id AT5G16610.1p  transcript_id AT5G16610.1  
At5g16610	chr5:005447794	0.0	C/5447794-5447945,5447658-5447712,5447351-5447583,5447197-5447230,5446363-5447108,5446218-5446266,5446011-5446136,5445834-5445938,5445664-5445755,5445439-5445592,5445068-5445343	AT5G16610.2  CDS  gene_syn MTG13.5, MTG13_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 31 Blast hits to 31 proteins in 12 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G16610.2p  transcript_id AT5G16610.2  protein_id AT5G16610.2p  transcript_id AT5G16610.2  
At5g16620	chr5:005450808	0.0	W/5450808-5451003,5451255-5451372,5451461-5451518,5451629-5451646,5452057-5452366,5452486-5452592,5452700-5452763,5453126-5453210,5453316-5453356,5453541-5453586,5453693-5453787,5453869-5453972,5454073-5454120,5454203-5454256	AT5G16620.1  CDS  gene_syn ATTIC40, MTG13.14, MTG13_14, PDE120, TIC40, pigment defective embryo  gene TIC40  function chloroplast protein import (Tic40)  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component chloroplast|GO:0009507|15659100|IDA  go_component chloroplast inner membrane|GO:0009706|17060496|IDA  go_component Tic complex|GO:0031897|15659100|TAS  go_process chloroplast organization|GO:0009658|15659100|IMP  go_process protein import into chloroplast stroma|GO:0045037|15659100|IMP  product TIC40  note TIC40; INVOLVED IN: protein import into chloroplast stroma, chloroplast organization; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636); Has 692 Blast hits to 302 proteins in 90 species: Archae - 0; Bacteria - 9; Metazoa - 155; Fungi - 65; Plants - 49; Viruses - 0; Other Eukaryotes - 414 (source: NCBI BLink).  protein_id AT5G16620.1p  transcript_id AT5G16620.1  protein_id AT5G16620.1p  transcript_id AT5G16620.1  
At5g16630	chr5:005455325	0.0	W/5455325-5455462,5455746-5456009,5456098-5456190,5456292-5456384,5456463-5456564,5456666-5456715,5457045-5457704,5457852-5458107,5458198-5458392,5458488-5458640,5458774-5458983,5459078-5459461	AT5G16630.1  CDS  gene_syn ATRAD4, MTG13.7, MTG13_7, RAD4  gene RAD4  go_component chloroplast|GO:0009507|18431481|IDA  go_process nucleotide-excision repair|GO:0006289||IEA  go_function damaged DNA binding|GO:0003684||IEA  go_component nucleus|GO:0005634||ISS  go_process nucleotide-excision repair|GO:0006289||ISS  go_function damaged DNA binding|GO:0003684||ISS  product RAD4; damaged DNA binding  note RAD4; FUNCTIONS IN: damaged DNA binding; INVOLVED IN: nucleotide-excision repair; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transglutaminase-like (InterPro:IPR002931), DNA repair protein Rad4, DNA-binding domain 1 (InterPro:IPR018326), DNA repair protein Rad4, DNA-binding domain 3 (InterPro:IPR018328), DNA repair protein Rad4, DNA-binding domain 2 (InterPro:IPR018327), DNA repair protein Rad4, transglutaminase-like domain (InterPro:IPR018325), DNA repair protein Rad4 (InterPro:IPR004583); Has 484 Blast hits to 413 proteins in 129 species: Archae - 0; Bacteria - 0; Metazoa - 196; Fungi - 169; Plants - 44; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT5G16630.1p  transcript_id AT5G16630.1  protein_id AT5G16630.1p  transcript_id AT5G16630.1  
At5g16630	chr5:005455325	0.0	W/5455325-5455462,5455746-5456009,5456098-5456190,5456292-5456384,5456463-5456564,5456666-5456715,5457045-5457704,5457852-5458107,5458198-5458392,5458488-5458640,5458774-5458983,5459078-5459461	AT5G16630.2  CDS  gene_syn ATRAD4, MTG13.7, MTG13_7, RAD4  gene RAD4  go_component chloroplast|GO:0009507|18431481|IDA  go_process nucleotide-excision repair|GO:0006289||IEA  go_function damaged DNA binding|GO:0003684||IEA  go_component nucleus|GO:0005634||ISS  go_process nucleotide-excision repair|GO:0006289||ISS  go_function damaged DNA binding|GO:0003684||ISS  product RAD4; damaged DNA binding  note RAD4; FUNCTIONS IN: damaged DNA binding; INVOLVED IN: nucleotide-excision repair; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transglutaminase-like (InterPro:IPR002931), DNA repair protein Rad4, DNA-binding domain 1 (InterPro:IPR018326), DNA repair protein Rad4, DNA-binding domain 3 (InterPro:IPR018328), DNA repair protein Rad4, DNA-binding domain 2 (InterPro:IPR018327), DNA repair protein Rad4, transglutaminase-like domain (InterPro:IPR018325), DNA repair protein Rad4 (InterPro:IPR004583); Has 484 Blast hits to 413 proteins in 129 species: Archae - 0; Bacteria - 0; Metazoa - 196; Fungi - 169; Plants - 44; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT5G16630.2p  transcript_id AT5G16630.2  protein_id AT5G16630.2p  transcript_id AT5G16630.2  
At5g16640	chr5:005461031	0.0	W/5461031-5462545	AT5G16640.1  CDS  gene_syn MTG13.9, MTG13_9  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: F mature embryo stage, 4 leaf senescence stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62680.1); Has 27324 Blast hits to 6063 proteins in 188 species: Archae - 4; Bacteria - 18; Metazoa - 819; Fungi - 570; Plants - 24583; Viruses - 0; Other Eukaryotes - 1330 (source: NCBI BLink).  protein_id AT5G16640.1p  transcript_id AT5G16640.1  protein_id AT5G16640.1p  transcript_id AT5G16640.1  
At5g16650	chr5:005465046	0.0	C/5465046-5465075,5464688-5464765,5464515-5464590,5463928-5464001,5463739-5463812,5463575-5463617,5463446-5463457	AT5G16650.1  CDS  gene_syn MTG13.10, MTG13_10  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G33735.1); Has 16083 Blast hits to 16080 proteins in 1936 species: Archae - 108; Bacteria - 5268; Metazoa - 3302; Fungi - 1476; Plants - 1210; Viruses - 11; Other Eukaryotes - 4708 (source: NCBI BLink).  protein_id AT5G16650.1p  transcript_id AT5G16650.1  protein_id AT5G16650.1p  transcript_id AT5G16650.1  
At5g16660	chr5:005466967	0.0	C/5466967-5467006,5466415-5466553,5466239-5466335,5465699-5465929	AT5G16660.1  CDS  gene_syn MTG13.11, MTG13_11  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02900.1); Has 64 Blast hits to 64 proteins in 22 species: Archae - 0; Bacteria - 25; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G16660.1p  transcript_id AT5G16660.1  protein_id AT5G16660.1p  transcript_id AT5G16660.1  
At5g16660	chr5:005466967	0.0	C/5466967-5467006,5466421-5466553,5466239-5466335,5465699-5465929	AT5G16660.2  CDS  gene_syn MTG13.11, MTG13_11  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02900.1); Has 64 Blast hits to 64 proteins in 22 species: Archae - 0; Bacteria - 25; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G16660.2p  transcript_id AT5G16660.2  protein_id AT5G16660.2p  transcript_id AT5G16660.2  
At5g16680	chr5:005472954	0.0	C/5472954-5472956,5471884-5472726,5471677-5471762,5471433-5471521,5471024-5471305,5470519-5470914,5469544-5470297,5469180-5469410,5468973-5469097,5468436-5468713,5467534-5468319	AT5G16680.1  CDS  gene_syn MTG13.4, MTG13_4  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product PHD finger family protein  note PHD finger family protein; FUNCTIONS IN: protein binding, DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: PHD finger protein-related (TAIR:AT3G02890.1); Has 6059 Blast hits to 3964 proteins in 315 species: Archae - 6; Bacteria - 432; Metazoa - 3215; Fungi - 559; Plants - 388; Viruses - 17; Other Eukaryotes - 1442 (source: NCBI BLink).  protein_id AT5G16680.1p  transcript_id AT5G16680.1  protein_id AT5G16680.1p  transcript_id AT5G16680.1  
At5g16690	chr5:005474410	0.0	W/5474410-5474499,5474634-5474846,5474957-5475131,5475271-5475440,5475545-5475675,5475797-5476070,5476166-5476243,5476544-5476617,5476793-5476883,5477324-5477496,5477785-5477854,5478116-5478201,5478477-5478566,5478731-5478806,5479078-5479205,5479437-5479616,5479773-5479878	AT5G16690.1  CDS  gene_syn ATORC3, F5E19.30, F5E19_30, ORC3, ORIGIN RECOGNITION COMPLEX SUBUNIT 3  gene ORC3  function Origin Recognition Complex subunit 3. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.  go_component origin recognition complex|GO:0000808|16179646|ISS  go_process DNA replication|GO:0006260|7502077|ISS  go_function protein binding|GO:0005515|16179646|IPI  product ORC3 (ORIGIN RECOGNITION COMPLEX SUBUNIT 3); protein binding  note ORIGIN RECOGNITION COMPLEX SUBUNIT 3 (ORC3); FUNCTIONS IN: protein binding; INVOLVED IN: DNA replication; LOCATED IN: origin recognition complex; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Origin recognition complex subunit 3, N-terminal (InterPro:IPR010748); Has 243 Blast hits to 215 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 142; Fungi - 60; Plants - 22; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT5G16690.1p  transcript_id AT5G16690.1  protein_id AT5G16690.1p  transcript_id AT5G16690.1  
At5g16700	chr5:005480763	0.0	W/5480763-5481161,5481453-5481700,5482036-5482451,5482642-5483045	AT5G16700.1  CDS  gene_syn F5E19.40, F5E19_40  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 5 protein / cellulase family protein  note glycosyl hydrolase family 5 protein / cellulase family protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 5 protein / cellulase family protein (TAIR:AT5G17500.1); Has 255 Blast hits to 249 proteins in 93 species: Archae - 4; Bacteria - 109; Metazoa - 0; Fungi - 59; Plants - 65; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT5G16700.1p  transcript_id AT5G16700.1  protein_id AT5G16700.1p  transcript_id AT5G16700.1  
At5g16710	chr5:005483312	0.0	W/5483312-5483507,5483829-5483919,5484033-5484176,5484343-5484460,5484584-5484724,5484840-5484926	AT5G16710.1  CDS  gene_syn DHAR3, F5E19.50, F5E19_50, dehydroascorbate reductase 1  gene DHAR3  function The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_function glutathione dehydrogenase (ascorbate) activity|GO:0045174|12077129|IDA  go_function glutathione dehydrogenase (ascorbate) activity|GO:0045174||ISS  product DHAR3 (dehydroascorbate reductase 1); glutathione dehydrogenase (ascorbate)  note dehydroascorbate reductase 1 (DHAR3); FUNCTIONS IN: glutathione dehydrogenase (ascorbate) activity; INVOLVED IN: tRNA aminoacylation for protein translation; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: DHAR2 (DEHYDROASCORBATE REDUCTASE 2); glutathione binding / glutathione dehydrogenase (ascorbate) (TAIR:AT1G75270.1); Has 3672 Blast hits to 3640 proteins in 768 species: Archae - 0; Bacteria - 1462; Metazoa - 878; Fungi - 119; Plants - 409; Viruses - 0; Other Eukaryotes - 804 (source: NCBI BLink).  protein_id AT5G16710.1p  transcript_id AT5G16710.1  protein_id AT5G16710.1p  transcript_id AT5G16710.1  
At5g16715	chr5:005485353	0.0	W/5485353-5485518,5485633-5485717,5485870-5485996,5486231-5486314,5486567-5486661,5486957-5487048,5487291-5487344,5487452-5487504,5487588-5487649,5487998-5488073,5488537-5488620,5488866-5489014,5489123-5489228,5489311-5489427,5489578-5489798,5490005-5490094,5490337-5490448,5490669-5490779,5490892-5491029,5491396-5491446,5491523-5491635,5491711-5491858,5492166-5492270,5492393-5492494,5492599-5492671,5492802-5492968,5493098-5493229	AT5G16715.1  CDS  gene_syn EMB2247, embryo defective 2247  gene EMB2247  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function valine-tRNA ligase activity|GO:0004832||IEA  go_function ATP binding|GO:0005524||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||ISS  go_process embryonic development ending in seed dormancy|GO:0009793|16297076|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS  go_function ATP binding|GO:0005524||ISS  product EMB2247 (embryo defective 2247); ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / valine-tRNA ligase  note embryo defective 2247 (EMB2247); FUNCTIONS IN: valine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), tRNA-binding arm (InterPro:IPR010978), Valyl-tRNA synthetase, class Ia (InterPro:IPR002303), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300); BEST Arabidopsis thaliana protein match is: TWN2 (TWIN 2); ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / valine-tRNA ligase (TAIR:AT1G14610.1); Has 29489 Blast hits to 28219 proteins in 1892 species: Archae - 621; Bacteria - 11135; Metazoa - 736; Fungi - 500; Plants - 189; Viruses - 0; Other Eukaryotes - 16308 (source: NCBI BLink).  protein_id AT5G16715.1p  transcript_id AT5G16715.1  protein_id AT5G16715.1p  transcript_id AT5G16715.1  
At5g16720	chr5:005494309	0.0	W/5494309-5495101,5495191-5495268,5495406-5496562	AT5G16720.1  CDS  gene_syn F5E19.60, F5E19_60  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70750.1); Has 15594 Blast hits to 10917 proteins in 667 species: Archae - 98; Bacteria - 816; Metazoa - 8240; Fungi - 1021; Plants - 619; Viruses - 96; Other Eukaryotes - 4704 (source: NCBI BLink).  protein_id AT5G16720.1p  transcript_id AT5G16720.1  protein_id AT5G16720.1p  transcript_id AT5G16720.1  
At5g16730	chr5:005497890	0.0	W/5497890-5497906,5498138-5498357,5498451-5500775	AT5G16730.1  CDS  gene_syn F5E19.70, F5E19_70  go_component chloroplast|GO:0009507||IEA  product unknown protein  note LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Spectrin/alpha-actinin (InterPro:IPR018159); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02930.1); Has 241703 Blast hits to 112530 proteins in 2711 species: Archae - 2642; Bacteria - 41887; Metazoa - 104467; Fungi - 18239; Plants - 8786; Viruses - 1373; Other Eukaryotes - 64309 (source: NCBI BLink).  protein_id AT5G16730.1p  transcript_id AT5G16730.1  protein_id AT5G16730.1p  transcript_id AT5G16730.1  
At5g16740	chr5:005502715	0.0	C/5502715-5502856,5501747-5502345,5501044-5501583	AT5G16740.1  CDS  gene_syn F5E19.80, F5E19_80  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product amino acid transporter family protein  note amino acid transporter family protein; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid transporter family protein (TAIR:AT5G02170.1); Has 3304 Blast hits to 3287 proteins in 244 species: Archae - 9; Bacteria - 163; Metazoa - 1440; Fungi - 633; Plants - 613; Viruses - 8; Other Eukaryotes - 438 (source: NCBI BLink).  protein_id AT5G16740.1p  transcript_id AT5G16740.1  protein_id AT5G16740.1p  transcript_id AT5G16740.1  
At5g16750	chr5:005508970	0.0	C/5508970-5509266,5508661-5508843,5508341-5508502,5507965-5508185,5507573-5507855,5507322-5507456,5506979-5507097,5506370-5506526,5505937-5506183,5505779-5505855,5505460-5505579,5505218-5505348,5504954-5505128,5504541-5504864	AT5G16750.1  CDS  gene_syn F5E19.90, F5E19_90, TORMOZEMBRYO DEFECTIVE, TOZ  gene TOZ  function Encodes a nucleolar localized WD-40 repeat protein that is preferentially expressed in dividing cells and is required for regulated division planes and embryo development.  go_component nucleolus|GO:0005730|17616738|IDA  go_process embryonic development ending in seed dormancy|GO:0009793|17616738|IMP  go_process embryonic pattern specification|GO:0009880|17616738|IMP  go_process cell division|GO:0051301|17616738|IMP  go_function nucleotide binding|GO:0000166||ISS  product TOZ (TORMOZEMBRYO DEFECTIVE); nucleotide binding  note TORMOZEMBRYO DEFECTIVE (TOZ); FUNCTIONS IN: nucleotide binding; INVOLVED IN: embryonic development ending in seed dormancy, embryonic pattern specification, cell division; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), Small-subunit processome, Utp13 (InterPro:IPR013934); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G21540.1); Has 113332 Blast hits to 28179 proteins in 715 species: Archae - 72; Bacteria - 9037; Metazoa - 55025; Fungi - 21214; Plants - 11620; Viruses - 0; Other Eukaryotes - 16364 (source: NCBI BLink).  protein_id AT5G16750.1p  transcript_id AT5G16750.1  protein_id AT5G16750.1p  transcript_id AT5G16750.1  
At5g16760	chr5:005509890	0.0	W/5509890-5510849	AT5G16760.1  CDS  gene_syn INOSITOL 1,3,4-TRISPHOSPHATE 5/6-KINASE  function Encodes a inositol 1,3,4-trisphosphate 5/6-kinase.  go_component intracellular|GO:0005622||IEA  go_process inositol and derivative phosphorylation|GO:0046853|9126335|IDA  go_function catalytic activity|GO:0003824||ISS  go_function inositol or phosphatidylinositol kinase activity|GO:0004428|9126335|IDA  product inositol 1,3,4-trisphosphate 5/6-kinase  note inositol 1,3,4-trisphosphate 5/6-kinase; FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, catalytic activity; INVOLVED IN: inositol and derivative phosphorylation; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Inositol-tetrakisphosphate 1-kinase (InterPro:IPR017427), ATP-grasp fold (InterPro:IPR011761), Inositol 1, 3, 4-trisphosphate 56-kinase (InterPro:IPR008656); BEST Arabidopsis thaliana protein match is: inositol 1,3,4-trisphosphate 5/6-kinase family protein (TAIR:AT4G08170.2); Has 284 Blast hits to 283 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 78; Fungi - 0; Plants - 169; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT5G16760.1p  transcript_id AT5G16760.1  protein_id AT5G16760.1p  transcript_id AT5G16760.1  
At5g16770	chr5:005515209	0.0	W/5515209-5515471,5515873-5516583,5516698-5516734	AT5G16770.1  CDS  gene_syn AtMYB9, F5E19.110, F5E19_110, myb domain protein 9  gene AtMYB9  function Member of the R2R3 factor gene family.  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product AtMYB9 (myb domain protein 9); DNA binding / transcription factor  note myb domain protein 9 (AtMYB9); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to abscisic acid stimulus, regulation of transcription, DNA-dependent; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: MYB107 (myb domain protein 107); DNA binding / transcription factor (TAIR:AT3G02940.1); Has 6431 Blast hits to 5923 proteins in 364 species: Archae - 0; Bacteria - 0; Metazoa - 635; Fungi - 306; Plants - 3844; Viruses - 3; Other Eukaryotes - 1643 (source: NCBI BLink).  protein_id AT5G16770.1p  transcript_id AT5G16770.1  protein_id AT5G16770.1p  transcript_id AT5G16770.1  
At5g16770	chr5:005515209	0.0	W/5515209-5515471,5515873-5516583,5516698-5516734	AT5G16770.2  CDS  gene_syn AtMYB9, F5E19.110, F5E19_110, myb domain protein 9  gene AtMYB9  function Member of the R2R3 factor gene family.  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product AtMYB9 (myb domain protein 9); DNA binding / transcription factor  note myb domain protein 9 (AtMYB9); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to abscisic acid stimulus, regulation of transcription, DNA-dependent; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB107 (myb domain protein 107); DNA binding / transcription factor (TAIR:AT3G02940.1); Has 6431 Blast hits to 5923 proteins in 364 species: Archae - 0; Bacteria - 0; Metazoa - 635; Fungi - 306; Plants - 3844; Viruses - 3; Other Eukaryotes - 1643 (source: NCBI BLink).  protein_id AT5G16770.2p  transcript_id AT5G16770.2  protein_id AT5G16770.2p  transcript_id AT5G16770.2  
At5g16780	chr5:005521016	0.0	C/5521016-5521566,5520798-5520936,5520654-5520696,5520384-5520497,5520196-5520292,5520043-5520109,5519896-5519955,5519194-5519803,5518503-5518900,5518150-5518370,5517965-5518049,5517784-5517861	AT5G16780.1  CDS  gene_syn DEFECTIVELY ORGANIZED TRIBUTARIES 2, DOT2, F5E19.120, F5E19_120, MDF, MERISTEM-DEFECTIVE  gene DOT2  function Encodes a protein belonging to SART-1 family. The gene is expressed in the basal region of the developing embryo during heart stage. Phenotypic analyses of dot2 mutants suggest that this protein plays a role in root, shoot, and flower development. dot2 mutants are dwarved plants that display an aberrant spurred leaf venation pattern and fail to flower. In the roots DOT2 appears to be require for normal meristem organization and maintenance and the proper expression of PIN and PLT genes.  go_component nucleus|GO:0005634|19000164|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_process meristem structural organization|GO:0009933|19000164|IMP  go_process post-embryonic root development|GO:0048528|19000164|IMP  go_process flower development|GO:0009908|18643975|IMP  go_process phloem or xylem histogenesis|GO:0010087|18643975|IMP  go_process leaf vascular tissue pattern formation|GO:0010305|18643975|IMP  go_process cotyledon vascular tissue pattern formation|GO:0010588|18643975|IMP  go_process root development|GO:0048364|18643975|IMP  go_process leaf development|GO:0048366|18643975|IMP  go_process shoot development|GO:0048367|18643975|IMP  go_function molecular_function|GO:0003674||ND  product DOT2 (DEFECTIVELY ORGANIZED TRIBUTARIES 2)  note DEFECTIVELY ORGANIZED TRIBUTARIES 2 (DOT2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 9 processes; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SART-1 protein (InterPro:IPR005011); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14700.1); Has 110398 Blast hits to 43644 proteins in 1499 species: Archae - 255; Bacteria - 22048; Metazoa - 46095; Fungi - 9869; Plants - 4202; Viruses - 559; Other Eukaryotes - 27370 (source: NCBI BLink).  protein_id AT5G16780.1p  transcript_id AT5G16780.1  protein_id AT5G16780.1p  transcript_id AT5G16780.1  
At5g16790	chr5:005522879	0.0	C/5522879-5523475,5522642-5522746	AT5G16790.1  CDS  gene_syn F5E19.130, F5E19_130  product unknown protein  note EXPRESSED IN: shoot apex; CONTAINS InterPro DOMAIN/s: Tho complex subunit 7 (InterPro:IPR018018), Tho complex subunit 7/Mft1p (InterPro:IPR008501); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02950.1); Has 1782 Blast hits to 1524 proteins in 231 species: Archae - 15; Bacteria - 107; Metazoa - 987; Fungi - 119; Plants - 63; Viruses - 25; Other Eukaryotes - 466 (source: NCBI BLink).  protein_id AT5G16790.1p  transcript_id AT5G16790.1  protein_id AT5G16790.1p  transcript_id AT5G16790.1  
At5g16800	chr5:005526150	0.0	C/5526150-5526295,5525899-5526043,5525157-5525256,5524720-5525039	AT5G16800.1  CDS  gene_syn F5E19.140, F5E19_140  go_process metabolic process|GO:0008152||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product GCN5-related N-acetyltransferase (GNAT) family protein  note GCN5-related N-acetyltransferase (GNAT) family protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: GCN5-related N-acetyltransferase (GNAT) family protein (TAIR:AT3G02980.1); Has 649 Blast hits to 649 proteins in 207 species: Archae - 49; Bacteria - 127; Metazoa - 223; Fungi - 49; Plants - 61; Viruses - 2; Other Eukaryotes - 138 (source: NCBI BLink).  protein_id AT5G16800.1p  transcript_id AT5G16800.1  protein_id AT5G16800.1p  transcript_id AT5G16800.1  
At5g16800	chr5:005526150	0.0	C/5526150-5526295,5525899-5526043,5525157-5525256,5524811-5525039,5524509-5524701	AT5G16800.2  CDS  gene_syn F5E19.140, F5E19_140  go_process metabolic process|GO:0008152||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product GCN5-related N-acetyltransferase (GNAT) family protein  note GCN5-related N-acetyltransferase (GNAT) family protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: GCN5-related N-acetyltransferase (GNAT) family protein (TAIR:AT3G02980.1); Has 653 Blast hits to 653 proteins in 208 species: Archae - 49; Bacteria - 129; Metazoa - 223; Fungi - 49; Plants - 61; Viruses - 2; Other Eukaryotes - 140 (source: NCBI BLink).  protein_id AT5G16800.2p  transcript_id AT5G16800.2  protein_id AT5G16800.2p  transcript_id AT5G16800.2  
At5g16810	chr5:005529652	0.0	C/5529652-5529878,5529196-5529294,5529048-5529105,5528748-5528828,5528579-5528644,5528230-5528468,5528043-5528114,5527747-5527869,5527580-5527661,5527432-5527478,5527164-5527245,5526860-5526940	AT5G16810.1  CDS  gene_syn F5E19.150, F5E19_150  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  product ATP binding / protein kinase  note ATP binding / protein kinase; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Protein kinase-like (InterPro:IPR011009); Has 43 Blast hits to 43 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 9; Plants - 30; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G16810.1p  transcript_id AT5G16810.1  protein_id AT5G16810.1p  transcript_id AT5G16810.1  
At5g16820	chr5:005530446	0.0	W/5530446-5530703,5531310-5532497	AT5G16820.1  CDS  gene_syn ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ATHSFA1B, CLASS A HEAT SHOCK FACTOR 1B, F5E19.160, F5E19_160, HEAT SHOCK FACTOR 3, HSF3, HSFA1B  gene HSF3  function Encodes a putative transcription factor whose expression is not induced by heat but whose stable overexpression leads to expression of HSP. Required early in the stress response for transient expression of heat shock genes.  go_component nucleus|GO:0005634||IEA  go_process response to heat|GO:0009408|9645433|IMP  go_function DNA binding|GO:0003677|9645433|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9645433|IMP  go_function transcription factor activity|GO:0003700||ISS  product HSF3 (HEAT SHOCK FACTOR 3); DNA binding / transcription factor  note HEAT SHOCK FACTOR 3 (HSF3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to heat; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: ATHSFA1E; DNA binding / transcription factor (TAIR:AT3G02990.1); Has 1614 Blast hits to 1587 proteins in 173 species: Archae - 0; Bacteria - 8; Metazoa - 307; Fungi - 334; Plants - 516; Viruses - 0; Other Eukaryotes - 449 (source: NCBI BLink).  protein_id AT5G16820.1p  transcript_id AT5G16820.1  protein_id AT5G16820.1p  transcript_id AT5G16820.1  
At5g16820	chr5:005530446	0.0	W/5530446-5530703,5531310-5532497	AT5G16820.2  CDS  gene_syn ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ATHSFA1B, CLASS A HEAT SHOCK FACTOR 1B, F5E19.160, F5E19_160, HEAT SHOCK FACTOR 3, HSF3, HSFA1B  gene HSF3  function Encodes a putative transcription factor whose expression is not induced by heat but whose stable overexpression leads to expression of HSP. Required early in the stress response for transient expression of heat shock genes.  go_component nucleus|GO:0005634||IEA  go_process response to heat|GO:0009408|9645433|IMP  go_function DNA binding|GO:0003677|9645433|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9645433|IMP  go_function transcription factor activity|GO:0003700||ISS  product HSF3 (HEAT SHOCK FACTOR 3); DNA binding / transcription factor  note HEAT SHOCK FACTOR 3 (HSF3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to heat; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: ATHSFA1E; DNA binding / transcription factor (TAIR:AT3G02990.1); Has 1614 Blast hits to 1587 proteins in 173 species: Archae - 0; Bacteria - 8; Metazoa - 307; Fungi - 334; Plants - 516; Viruses - 0; Other Eukaryotes - 449 (source: NCBI BLink).  protein_id AT5G16820.2p  transcript_id AT5G16820.2  protein_id AT5G16820.2p  transcript_id AT5G16820.2  
At5g16830	chr5:005534944	0.0	C/5534944-5535152,5534499-5534592,5534159-5534295,5533856-5533930,5533436-5533593,5533237-5533337,5533076-5533141	AT5G16830.1  CDS  gene_syn ATPEP12, ATSYP21, PEP12, PEP12P, SYNTAXIN OF PLANTS 21, SYP21  gene SYP21  function member of SYP2 Gene Family. Over-expression of the gene in tobacco protoplasts leads to a disruption of vacuolar transport from the prevacuolar compartment (PVC) to the vacuole, but not from the Golgi apparatus to the plasma membrane.  go_component late endosome|GO:0005770|11115874|TAS  go_component late endosome|GO:0005770|16935987|IDA  go_component membrane|GO:0016020|16935987|IDA  go_component trans-Golgi network transport vesicle|GO:0030140|11115874|TAS  go_component trans-Golgi network transport vesicle|GO:0030140|9144962|IDA  go_process protein targeting to vacuole|GO:0006623|17662029|IDA  go_process intracellular protein transport|GO:0006886|11115874|TAS  go_process Golgi to vacuole transport|GO:0006896|10504581|TAS  go_process membrane fusion|GO:0006944|11115874|TAS  go_process late endosome to vacuole transport|GO:0045324|16935987|IMP  go_function SNAP receptor activity|GO:0005484|10504581|IDA  go_function SNAP receptor activity|GO:0005484|11115874|TAS  go_function SNAP receptor activity|GO:0005484|7638178|IMP  product SYP21 (SYNTAXIN OF PLANTS 21); SNAP receptor  note SYNTAXIN OF PLANTS 21 (SYP21); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion, intracellular protein transport, Golgi to vacuole transport, late endosome to vacuole transport, protein targeting to vacuole; LOCATED IN: trans-Golgi network transport vesicle, late endosome, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), t-SNARE (InterPro:IPR010989), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: VAM3; SNAP receptor (TAIR:AT5G46860.1); Has 1702 Blast hits to 1702 proteins in 192 species: Archae - 1; Bacteria - 4; Metazoa - 788; Fungi - 288; Plants - 308; Viruses - 0; Other Eukaryotes - 313 (source: NCBI BLink).  protein_id AT5G16830.1p  transcript_id AT5G16830.1  protein_id AT5G16830.1p  transcript_id AT5G16830.1  
At5g16840	chr5:005536042	0.0	W/5536042-5536047,5536755-5536864,5537024-5537093,5537317-5537391,5537505-5538026	AT5G16840.2  CDS  gene_syn BINDINGPARTNEROFACD11 1, BPA1, F5E19.180, F5E19_180  gene BPA1  go_process oxidation reduction|GO:0055114||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function nucleic acid binding|GO:0003676||ISS  product BPA1 (BINDINGPARTNEROFACD11 1); nucleic acid binding / nucleotide binding / oxidoreductase  note BINDINGPARTNEROFACD11 1 (BPA1); FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT4G17720.1); Has 278 Blast hits to 278 proteins in 66 species: Archae - 0; Bacteria - 4; Metazoa - 17; Fungi - 81; Plants - 165; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT5G16840.2p  transcript_id AT5G16840.2  protein_id AT5G16840.2p  transcript_id AT5G16840.2  
At5g16840	chr5:005536042	0.0	W/5536042-5536047,5536755-5536864,5537027-5537093,5537317-5537391,5537505-5538026	AT5G16840.1  CDS  gene_syn BINDINGPARTNEROFACD11 1, BPA1, F5E19.180, F5E19_180  gene BPA1  go_process oxidation reduction|GO:0055114||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function nucleic acid binding|GO:0003676||ISS  product BPA1 (BINDINGPARTNEROFACD11 1); nucleic acid binding / nucleotide binding / oxidoreductase  note BINDINGPARTNEROFACD11 1 (BPA1); FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT4G17720.1); Has 297 Blast hits to 297 proteins in 71 species: Archae - 0; Bacteria - 2; Metazoa - 22; Fungi - 77; Plants - 179; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT5G16840.1p  transcript_id AT5G16840.1  protein_id AT5G16840.1p  transcript_id AT5G16840.1  
At5g16840	chr5:005536042	0.0	W/5536042-5536047,5536761-5536864,5537027-5537093,5537317-5537391,5537505-5538026	AT5G16840.3  CDS  gene_syn BINDINGPARTNEROFACD11 1, BPA1, F5E19.180, F5E19_180  gene BPA1  go_process oxidation reduction|GO:0055114||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function nucleic acid binding|GO:0003676||ISS  product BPA1 (BINDINGPARTNEROFACD11 1); nucleic acid binding / nucleotide binding / oxidoreductase  note BINDINGPARTNEROFACD11 1 (BPA1); FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT4G17720.1); Has 293 Blast hits to 293 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 22; Fungi - 75; Plants - 179; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT5G16840.3p  transcript_id AT5G16840.3  protein_id AT5G16840.3p  transcript_id AT5G16840.3  
At5g16850	chr5:005543145	0.0	C/5543145-5543444,5542915-5542989,5542768-5542833,5542575-5542686,5542049-5542395,5541680-5541752,5541425-5541557,5541104-5541239,5539788-5540840,5539086-5539615,5538714-5538986,5538323-5538596	AT5G16850.1  CDS  gene_syn ATTERT, F5E19.190, F5E19_190, TELOMERASE REVERSE TRANSCRIPTASE  gene ATTERT  function Encodes the catalytic subunit of telomerase reverse transcriptase. Involved in telomere homeostasis. Homozygous double mutants with ATR show gross morphological defects over a period of generations. TERT shows Class II telomerase activity in vitro, indicating that it can initiate de novo telomerase synthesis on non-telomeric DNA, often using a preferred position within the telomerase-bound RNA.  go_component nucleus|GO:0005634||IEA  go_process nucleolus organization|GO:0007000|14579127|IMP  go_process telomere maintenance via telomerase|GO:0007004|10611295|IMP  go_process telomere maintenance via telomerase|GO:0007004|16166376|IGI  go_process chromosome localization|GO:0050000|14579127|IMP  go_process chromosome organization|GO:0051276|16166376|IGI  go_function telomerase activity|GO:0003720|10611295|IDA  go_function telomeric template RNA reverse transcriptase activity|GO:0003721||ISS  product ATTERT (TELOMERASE REVERSE TRANSCRIPTASE); telomerase/ telomeric template RNA reverse transcriptase  note TELOMERASE REVERSE TRANSCRIPTASE (ATTERT); FUNCTIONS IN: telomerase activity, telomeric template RNA reverse transcriptase activity; INVOLVED IN: nucleolus organization, chromosome organization, telomere maintenance via telomerase, chromosome localization; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Telomere reverse transcriptase (InterPro:IPR003545), RNA-directed DNA polymerase (reverse transcriptase) (InterPro:IPR000477); Has 489 Blast hits to 412 proteins in 137 species: Archae - 0; Bacteria - 2; Metazoa - 145; Fungi - 128; Plants - 151; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT5G16850.1p  transcript_id AT5G16850.1  protein_id AT5G16850.1p  transcript_id AT5G16850.1  
At5g16860	chr5:005543834	0.0	W/5543834-5546386	AT5G16860.1  CDS  gene_syn F2K13.10, F2K13_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: DOT4 (DEFECTIVELY ORGANIZED TRIBUTARIES 4) (TAIR:AT4G18750.1); Has 15987 Blast hits to 5189 proteins in 154 species: Archae - 0; Bacteria - 6; Metazoa - 79; Fungi - 64; Plants - 15493; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink).  protein_id AT5G16860.1p  transcript_id AT5G16860.1  protein_id AT5G16860.1p  transcript_id AT5G16860.1  
At5g16870	chr5:005548369	0.0	C/5548369-5548542,5548239-5548297,5548066-5548125,5547918-5547987,5547590-5547659,5547396-5547422,5546975-5547024	AT5G16870.1  CDS  gene_syn F2K13.20, F2K13_20  go_process translation|GO:0006412||IEA  go_function aminoacyl-tRNA hydrolase activity|GO:0004045||IEA  product aminoacyl-tRNA hydrolase  note aminoacyl-tRNA hydrolase; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, PTH2 (InterPro:IPR002833); BEST Arabidopsis thaliana protein match is: aminoacyl-tRNA hydrolase (TAIR:AT3G03010.2); Has 625 Blast hits to 625 proteins in 230 species: Archae - 158; Bacteria - 4; Metazoa - 158; Fungi - 86; Plants - 40; Viruses - 8; Other Eukaryotes - 171 (source: NCBI BLink).  protein_id AT5G16870.1p  transcript_id AT5G16870.1  protein_id AT5G16870.1p  transcript_id AT5G16870.1  
At5g16880	chr5:005549658	0.0	W/5549658-5550176,5550463-5550726,5550834-5550909,5550987-5551021	AT5G16880.3  CDS  gene_syn F2K13.30, F2K13_30  go_component plasma membrane|GO:0005886|17317660|IDA  go_process intracellular protein transport|GO:0006886||IEA  go_component Golgi stack|GO:0005795||ISS  go_process intracellular protein transport|GO:0006886||ISS  go_process intra-Golgi vesicle-mediated transport|GO:0006891||ISS  go_function protein transporter activity|GO:0008565||ISS  product VHS domain-containing protein / GAT domain-containing protein  note VHS domain-containing protein / GAT domain-containing protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), GAT (InterPro:IPR004152), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: VHS domain-containing protein / GAT domain-containing protein (TAIR:AT1G06210.1); Has 1137 Blast hits to 1137 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 676; Fungi - 268; Plants - 137; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT5G16880.3p  transcript_id AT5G16880.3  protein_id AT5G16880.3p  transcript_id AT5G16880.3  
At5g16880	chr5:005549658	0.0	W/5549658-5550176,5550463-5550726,5550834-5551274	AT5G16880.1  CDS  gene_syn F2K13.30, F2K13_30  go_component plasma membrane|GO:0005886|17317660|IDA  go_process intracellular protein transport|GO:0006886||IEA  go_component Golgi stack|GO:0005795||ISS  go_process intracellular protein transport|GO:0006886||ISS  go_process intra-Golgi vesicle-mediated transport|GO:0006891||ISS  go_function protein transporter activity|GO:0008565||ISS  product VHS domain-containing protein / GAT domain-containing protein  note VHS domain-containing protein / GAT domain-containing protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), Target of Myb protein 1 (InterPro:IPR014645), GAT (InterPro:IPR004152), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: VHS domain-containing protein / GAT domain-containing protein (TAIR:AT1G06210.1); Has 1202 Blast hits to 1198 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 712; Fungi - 289; Plants - 145; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT5G16880.1p  transcript_id AT5G16880.1  protein_id AT5G16880.1p  transcript_id AT5G16880.1  
At5g16880	chr5:005549658	0.0	W/5549658-5550176,5550463-5550726,5550834-5551274	AT5G16880.2  CDS  gene_syn F2K13.30, F2K13_30  go_component plasma membrane|GO:0005886|17317660|IDA  go_process intracellular protein transport|GO:0006886||IEA  go_component Golgi stack|GO:0005795||ISS  go_process intracellular protein transport|GO:0006886||ISS  go_process intra-Golgi vesicle-mediated transport|GO:0006891||ISS  go_function protein transporter activity|GO:0008565||ISS  product VHS domain-containing protein / GAT domain-containing protein  note VHS domain-containing protein / GAT domain-containing protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), Target of Myb protein 1 (InterPro:IPR014645), GAT (InterPro:IPR004152), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: VHS domain-containing protein / GAT domain-containing protein (TAIR:AT1G06210.1); Has 1202 Blast hits to 1198 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 712; Fungi - 289; Plants - 145; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT5G16880.2p  transcript_id AT5G16880.2  protein_id AT5G16880.2p  transcript_id AT5G16880.2  
At5g16890	chr5:005551664	0.0	W/5551664-5552143,5552341-5552514,5552859-5553016,5553111-5553258,5553482-5553597,5553686-5553824,5553953-5554063,5554204-5554272,5554601-5554741	AT5G16890.1  CDS  gene_syn F2K13.40, F2K13_40  go_component chloroplast|GO:0009507||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product exostosin family protein  note exostosin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: ARAD1 (ARABINAN DEFICIENT 1); catalytic/ transferase, transferring glycosyl groups (TAIR:AT2G35100.1); Has 910 Blast hits to 909 proteins in 85 species: Archae - 0; Bacteria - 8; Metazoa - 213; Fungi - 4; Plants - 599; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT5G16890.1p  transcript_id AT5G16890.1  protein_id AT5G16890.1p  transcript_id AT5G16890.1  
At5g16900	chr5:005555254	0.0	W/5555254-5555320,5555435-5555972,5556264-5556769,5557120-5557264,5557349-5557420,5557748-5557819,5557907-5557978,5558050-5558213,5558313-5558527,5558634-5558760,5558853-5558918,5559072-5559261,5559349-5559715	AT5G16900.1  CDS  gene_syn F2K13.50, F2K13_50, LEAF AND FLOWER RELATED, LFR  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat protein kinase, putative  note leucine-rich repeat protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, leaf whorl, embryo, sepal, root; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT3G21340.1); Has 114034 Blast hits to 88570 proteins in 3197 species: Archae - 56; Bacteria - 7908; Metazoa - 38512; Fungi - 6873; Plants - 44875; Viruses - 382; Other Eukaryotes - 15428 (source: NCBI BLink).  protein_id AT5G16900.1p  transcript_id AT5G16900.1  protein_id AT5G16900.1p  transcript_id AT5G16900.1  
At5g16910	chr5:005561679	0.0	W/5561679-5562568,5562661-5563468,5563551-5565290	AT5G16910.1  CDS  gene_syn ATCSLD2, CELLULOSE-SYNTHASE LIKE D2, CSLD2, F2K13.60, F2K13_60  gene CSLD2  function encodes a gene similar to cellulose synthase. Located in golgi membranes.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component Golgi apparatus|GO:0005794|18768911|IDA  go_component integral to Golgi membrane|GO:0030173|18642024|IDA  go_process polysaccharide biosynthetic process|GO:0000271||ISS  go_process response to cold|GO:0009409|18768911|IEP  go_process plant-type cell wall biogenesis|GO:0009832||ISS  go_process root hair elongation|GO:0048767|18768911|IMP  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  product CSLD2 (CELLULOSE-SYNTHASE LIKE D2); cellulose synthase/ transferase, transferring glycosyl groups  note CELLULOSE-SYNTHASE LIKE D2 (CSLD2); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: response to cold, plant-type cell wall biogenesis, polysaccharide biosynthetic process, root hair elongation; LOCATED IN: Golgi apparatus, plasma membrane, integral to Golgi membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: CSLD3 (CELLULOSE SYNTHASE-LIKE D3); cellulose synthase/ transferase, transferring glycosyl groups (TAIR:AT3G03050.1); Has 2082 Blast hits to 1905 proteins in 430 species: Archae - 7; Bacteria - 725; Metazoa - 5; Fungi - 7; Plants - 1274; Viruses - 5; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT5G16910.1p  transcript_id AT5G16910.1  protein_id AT5G16910.1p  transcript_id AT5G16910.1  
At5g16920	chr5:005567084	0.0	W/5567084-5567854	AT5G16920.1  CDS  gene_syn F2K13.70, F2K13_70  go_component endomembrane system|GO:0012505||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26730.1); Has 24 Blast hits to 24 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G16920.1p  transcript_id AT5G16920.1  protein_id AT5G16920.1p  transcript_id AT5G16920.1  
At5g16930	chr5:005568578	0.0	W/5568578-5568904,5569127-5569222,5569422-5569532,5569624-5569933,5570121-5570211,5570307-5570637,5570809-5570957,5571046-5571565	AT5G16930.1  CDS  gene_syn F2K13.80, F2K13_80  go_component endomembrane system|GO:0012505||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATPase activity|GO:0016887||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (TAIR:AT3G03060.1); Has 38698 Blast hits to 27302 proteins in 1845 species: Archae - 846; Bacteria - 8730; Metazoa - 11396; Fungi - 3984; Plants - 1702; Viruses - 176; Other Eukaryotes - 11864 (source: NCBI BLink).  protein_id AT5G16930.1p  transcript_id AT5G16930.1  protein_id AT5G16930.1p  transcript_id AT5G16930.1  
At5g16940	chr5:005571797	0.0	C/5571797-5572204	AT5G16940.1  CDS  gene_syn F2K13.90, F2K13_90  go_process metabolic process|GO:0008152||IEA  go_function carbon-sulfur lyase activity|GO:0016846||IEA  go_component cellular_component|GO:0005575||ND  product carbon-sulfur lyase  note carbon-sulfur lyase; FUNCTIONS IN: carbon-sulfur lyase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutathione-dependent formaldehyde-activating, GFA (InterPro:IPR006913); Has 1933 Blast hits to 1931 proteins in 352 species: Archae - 0; Bacteria - 664; Metazoa - 60; Fungi - 38; Plants - 18; Viruses - 0; Other Eukaryotes - 1153 (source: NCBI BLink).  protein_id AT5G16940.1p  transcript_id AT5G16940.1  protein_id AT5G16940.1p  transcript_id AT5G16940.1  
At5g16940	chr5:005571797	0.0	C/5571797-5572204	AT5G16940.2  CDS  gene_syn F2K13.90, F2K13_90  go_process metabolic process|GO:0008152||IEA  go_function carbon-sulfur lyase activity|GO:0016846||IEA  go_component cellular_component|GO:0005575||ND  product carbon-sulfur lyase  note carbon-sulfur lyase; FUNCTIONS IN: carbon-sulfur lyase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutathione-dependent formaldehyde-activating, GFA (InterPro:IPR006913).  protein_id AT5G16940.2p  transcript_id AT5G16940.2  protein_id AT5G16940.2p  transcript_id AT5G16940.2  
At5g16950	chr5:005572640	0.0	W/5572640-5572939	AT5G16950.1  CDS  gene_syn F2K13.100, F2K13_100  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 16 Blast hits to 16 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G16950.1p  transcript_id AT5G16950.1  protein_id AT5G16950.1p  transcript_id AT5G16950.1  
At5g16960	chr5:005575654	0.0	C/5575654-5575884,5575388-5575568,5575133-5575299,5574989-5575071,5574537-5574915	AT5G16960.1  CDS  gene_syn F2K13.110, F2K13_110  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process response to oxidative stress|GO:0006979|7592828|IEP  product NADP-dependent oxidoreductase, putative  note NADP-dependent oxidoreductase, putative; FUNCTIONS IN: oxidoreductase activity, binding, zinc ion binding, catalytic activity; INVOLVED IN: response to oxidative stress; EXPRESSED IN: leaf whorl, sepal, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: NADP-dependent oxidoreductase, putative (TAIR:AT5G16990.1); Has 10744 Blast hits to 10706 proteins in 1001 species: Archae - 69; Bacteria - 4649; Metazoa - 719; Fungi - 713; Plants - 315; Viruses - 0; Other Eukaryotes - 4279 (source: NCBI BLink).  protein_id AT5G16960.1p  transcript_id AT5G16960.1  protein_id AT5G16960.1p  transcript_id AT5G16960.1  
At5g16970	chr5:005577774	0.0	C/5577774-5578001,5577415-5577595,5576995-5577161,5576809-5576891,5576291-5576669	AT5G16970.1  CDS  gene_syn AT-AER, F2K13.120, F2K13_120, alkenal reductase  gene AT-AER  function encodes a 2-alkenal reductase (EC 1.3.1.74), plays a key role in the detoxification of reactive carbonyls  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component nucleus|GO:0005634|16299173|IDA  go_component cytosol|GO:0005829|16299173|IDA  go_process response to oxidative stress|GO:0006979|16299173|IMP  go_process response to oxidative stress|GO:0006979|7592828|IEP  go_process response to oxidative stress|GO:0006979|7592828|IGI  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function 2-alkenal reductase activity|GO:0032440|16299173|IDA  product AT-AER (alkenal reductase); 2-alkenal reductase  note alkenal reductase (AT-AER); FUNCTIONS IN: 2-alkenal reductase activity; INVOLVED IN: response to oxidative stress, response to cadmium ion, response to cyclopentenone; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: NADP-dependent oxidoreductase, putative (TAIR:AT5G17000.1); Has 11913 Blast hits to 11900 proteins in 1060 species: Archae - 82; Bacteria - 5554; Metazoa - 783; Fungi - 761; Plants - 323; Viruses - 0; Other Eukaryotes - 4410 (source: NCBI BLink).  protein_id AT5G16970.1p  transcript_id AT5G16970.1  protein_id AT5G16970.1p  transcript_id AT5G16970.1  
At5g16980	chr5:005580293	0.0	C/5580293-5580383,5579900-5580066,5579722-5579804,5579202-5579580	AT5G16980.1  CDS  gene_syn F2K13.130, F2K13_130  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process response to oxidative stress|GO:0006979|7592828|IEP  go_process response to cyclopentenone|GO:0010583|18334669|IEP  product NADP-dependent oxidoreductase, putative  note NADP-dependent oxidoreductase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: response to oxidative stress, response to cyclopentenone; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: AT-AER (alkenal reductase); 2-alkenal reductase (TAIR:AT5G16970.1); Has 10893 Blast hits to 10880 proteins in 1040 species: Archae - 76; Bacteria - 5027; Metazoa - 696; Fungi - 750; Plants - 299; Viruses - 0; Other Eukaryotes - 4045 (source: NCBI BLink).  protein_id AT5G16980.1p  transcript_id AT5G16980.1  protein_id AT5G16980.1p  transcript_id AT5G16980.1  
At5g16990	chr5:005583628	0.0	C/5583628-5583849,5583071-5583251,5582650-5582816,5582460-5582542,5581831-5582209	AT5G16990.1  CDS  gene_syn F2K13.140, F2K13_140  function molecular function has not been defined, was shown involved in oxidative stress tolerance.  go_component plasma membrane|GO:0005886|17644812|IDA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process response to oxidative stress|GO:0006979|7592828|IEP  go_process response to oxidative stress|GO:0006979|7592828|IGI  product NADP-dependent oxidoreductase, putative  note NADP-dependent oxidoreductase, putative; FUNCTIONS IN: oxidoreductase activity, binding, zinc ion binding, catalytic activity; INVOLVED IN: response to oxidative stress; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: AT-AER (alkenal reductase); 2-alkenal reductase (TAIR:AT5G16970.1); Has 11932 Blast hits to 11893 proteins in 1061 species: Archae - 74; Bacteria - 5541; Metazoa - 803; Fungi - 755; Plants - 311; Viruses - 0; Other Eukaryotes - 4448 (source: NCBI BLink).  protein_id AT5G16990.1p  transcript_id AT5G16990.1  protein_id AT5G16990.1p  transcript_id AT5G16990.1  
At5g17000	chr5:005586764	0.0	C/5586764-5586991,5586225-5586405,5585772-5585938,5585597-5585679,5584983-5585361	AT5G17000.1  CDS  gene_syn F2K13.150, F2K13_150  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process response to oxidative stress|GO:0006979|7592828|IEP  product NADP-dependent oxidoreductase, putative  note NADP-dependent oxidoreductase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: response to oxidative stress; EXPRESSED IN: cultured cell, leaf; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: AT-AER (alkenal reductase); 2-alkenal reductase (TAIR:AT5G16970.1); Has 10930 Blast hits to 10918 proteins in 1012 species: Archae - 61; Bacteria - 5075; Metazoa - 698; Fungi - 676; Plants - 303; Viruses - 0; Other Eukaryotes - 4117 (source: NCBI BLink).  protein_id AT5G17000.1p  transcript_id AT5G17000.1  protein_id AT5G17000.1p  transcript_id AT5G17000.1  
At5g17010	chr5:005592282	0.0	C/5592282-5592332,5591721-5591809,5591330-5591408,5591015-5591086,5590773-5590839,5590548-5590672,5589873-5589974,5589389-5589757,5588898-5588978,5588638-5588692,5588222-5588322,5587851-5587982	AT5G17010.2  CDS  gene_syn F2K13.160, F2K13_160  go_component plasma membrane|GO:0005886|17151019|IDA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product sugar transporter family protein  note sugar transporter family protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: AtVGT1 (Arabidopsis thaliana vacuolar glucose transporter 1); carbohydrate transmembrane transporter/ fructose transmembrane transporter/ glucose transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT3G03090.1); Has 26152 Blast hits to 25678 proteins in 1442 species: Archae - 410; Bacteria - 14861; Metazoa - 3572; Fungi - 4768; Plants - 1217; Viruses - 2; Other Eukaryotes - 1322 (source: NCBI BLink).  protein_id AT5G17010.2p  transcript_id AT5G17010.2  protein_id AT5G17010.2p  transcript_id AT5G17010.2  
At5g17010	chr5:005592282	0.0	C/5592282-5592332,5591721-5591818,5591330-5591408,5590981-5591040,5590773-5590839,5590548-5590672,5589873-5589974,5589389-5589757,5589268-5589315,5589093-5589155,5588898-5588978,5588638-5588736,5588222-5588359,5587851-5587982	AT5G17010.1  CDS  gene_syn F2K13.160, F2K13_160  go_component plasma membrane|GO:0005886|17151019|IDA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product sugar transporter family protein  note sugar transporter family protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: AtVGT1 (Arabidopsis thaliana vacuolar glucose transporter 1); carbohydrate transmembrane transporter/ fructose transmembrane transporter/ glucose transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT3G03090.1); Has 31731 Blast hits to 31285 proteins in 1543 species: Archae - 504; Bacteria - 18458; Metazoa - 4219; Fungi - 5272; Plants - 1381; Viruses - 2; Other Eukaryotes - 1895 (source: NCBI BLink).  protein_id AT5G17010.1p  transcript_id AT5G17010.1  protein_id AT5G17010.1p  transcript_id AT5G17010.1  
At5g17010	chr5:005592282	0.0	C/5592282-5592332,5591721-5591818,5591330-5591408,5590981-5591040,5590773-5590839,5590548-5590672,5589873-5589974,5589389-5589757,5589268-5589315,5589093-5589155,5588898-5588978,5588638-5588736,5588222-5588359,5587851-5587982	AT5G17010.3  CDS  gene_syn F2K13.160, F2K13_160  go_component plasma membrane|GO:0005886|17151019|IDA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product sugar transporter family protein  note sugar transporter family protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: AtVGT1 (Arabidopsis thaliana vacuolar glucose transporter 1); carbohydrate transmembrane transporter/ fructose transmembrane transporter/ glucose transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT3G03090.1); Has 31731 Blast hits to 31285 proteins in 1543 species: Archae - 504; Bacteria - 18458; Metazoa - 4219; Fungi - 5272; Plants - 1381; Viruses - 2; Other Eukaryotes - 1895 (source: NCBI BLink).  protein_id AT5G17010.3p  transcript_id AT5G17010.3  protein_id AT5G17010.3p  transcript_id AT5G17010.3  
At5g17020	chr5:005594904	0.0	W/5594904-5595002,5595534-5595650,5595731-5595823,5595918-5595989,5596145-5596252,5596324-5596406,5596531-5596669,5596753-5596821,5596907-5596984,5597153-5597215,5597309-5597353,5597494-5597601,5597735-5597833,5597974-5598174,5598328-5598387,5598650-5598760,5599036-5599133,5599272-5599380,5599676-5599741,5599834-5599932,5600014-5600094,5600164-5600253,5600406-5600491,5600592-5600672,5600765-5600947,5601066-5601132,5601241-5601351,5601474-5601581,5601666-5601803,5601912-5602049,5602145-5602249,5602345-5602467	AT5G17020.1  CDS  gene_syn ATCRM1, ATXPO1, EXPORTIN 1, F2K13.170, F2K13_170, XPO1, XPO1A  gene XPO1A  function Encodes a member of the exportin protein family (XPO1A) which functions as receptors for nuclear export. Binds to a variety of proteins having leucine rich export signals.Along with XPO1B involved with development of the male and female gametophytes.  go_component nucleus|GO:0005634|10652141|TAS  go_component nucleus|GO:0005634||ISS  go_component nuclear pore|GO:0005643||ISS  go_component cytoplasm|GO:0005737||ISS  go_process protein import into nucleus, docking|GO:0000059||ISS  go_process protein export from nucleus|GO:0006611|10652141|ISS  go_process embryo sac development|GO:0009553|18791220|IGI  go_process pollen development|GO:0009555|18791220|IGI  go_process pollen germination|GO:0009846|18791220|IGI  go_process pollen tube growth|GO:0009860|18791220|IGI  go_function receptor activity|GO:0004872|10652141|ISS  go_function protein binding|GO:0005515|10652141|IPI  go_function protein transporter activity|GO:0008565||ISS  product XPO1A; protein binding / protein transporter/ receptor  note XPO1A; FUNCTIONS IN: protein transporter activity, protein binding, receptor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Exportin 1, C-terminal (InterPro:IPR014877), Exportin-1/Importin-beta-like (InterPro:IPR013598), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: XPO1B; binding / protein transporter (TAIR:AT3G03110.1); Has 921 Blast hits to 907 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 545; Fungi - 161; Plants - 66; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT5G17020.1p  transcript_id AT5G17020.1  protein_id AT5G17020.1p  transcript_id AT5G17020.1  
At5g17030	chr5:005604231	0.0	C/5604231-5604723,5603198-5604084	AT5G17030.1  CDS  gene_syn F2K13.180, F2K13_180, UDP-GLUCOSYL TRANSFERASE 78D3, UGT78D3  gene UGT78D3  go_process metabolic process|GO:0008152||IEA  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function quercetin 3-O-glucosyltransferase activity|GO:0080043|15352060|IDA  go_function flavonol 3-O-arabinosyltransferase activity|GO:0080059|18757557|IMP  product UGT78D3 (UDP-GLUCOSYL TRANSFERASE 78D3); UDP-glycosyltransferase/ flavonol 3-O-arabinosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring glycosyl groups  note UDP-GLUCOSYL TRANSFERASE 78D3 (UGT78D3); FUNCTIONS IN: quercetin 3-O-glucosyltransferase activity, flavonol 3-O-arabinosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2); UDP-glycosyltransferase/ anthocyanidin 3-O-glucosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT5G17050.1); Has 5115 Blast hits to 5088 proteins in 333 species: Archae - 0; Bacteria - 180; Metazoa - 2206; Fungi - 15; Plants - 2576; Viruses - 106; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT5G17030.1p  transcript_id AT5G17030.1  protein_id AT5G17030.1p  transcript_id AT5G17030.1  
At5g17040	chr5:005606499	0.0	C/5606499-5606963,5605358-5606221	AT5G17040.1  CDS  gene_syn F2K13.190, F2K13_190  go_process metabolic process|GO:0008152||IEA  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT78D3 (UDP-GLUCOSYL TRANSFERASE 78D3); UDP-glycosyltransferase/ flavonol 3-O-arabinosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT5G17030.1); Has 5129 Blast hits to 5105 proteins in 336 species: Archae - 0; Bacteria - 177; Metazoa - 2197; Fungi - 22; Plants - 2591; Viruses - 111; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT5G17040.1p  transcript_id AT5G17040.1  protein_id AT5G17040.1p  transcript_id AT5G17040.1  
At5g17050	chr5:005608891	0.0	C/5608891-5609392,5607828-5608708	AT5G17050.1  CDS  gene_syn F2K13.200, F2K13_200, UDP-GLUCOSYL TRANSFERASE 78D2, UGT78D2  gene UGT78D2  function The At5g17050 encodes a anthocyanidin 3-O-glucosyltransferase which specifically glucosylates the 3-position of the flavonoid C-ring. Anthocyanidins such as cyanidin and pelargonidin as well as flavonols such as kaempferol and quercetin are accepted substrates.  go_process metabolic process|GO:0008152||IEA  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function anthocyanidin 3-O-glucosyltransferase activity|GO:0047213|15807784|IDA  go_function quercetin 3-O-glucosyltransferase activity|GO:0080043|15352060|IDA  product UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2); UDP-glycosyltransferase/ anthocyanidin 3-O-glucosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring glycosyl groups  note UDP-GLUCOSYL TRANSFERASE 78D2 (UGT78D2); FUNCTIONS IN: quercetin 3-O-glucosyltransferase activity, anthocyanidin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT78D3 (UDP-GLUCOSYL TRANSFERASE 78D3); UDP-glycosyltransferase/ flavonol 3-O-arabinosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT5G17030.1); Has 5074 Blast hits to 5052 proteins in 342 species: Archae - 0; Bacteria - 203; Metazoa - 2122; Fungi - 19; Plants - 2608; Viruses - 86; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT5G17050.1p  transcript_id AT5G17050.1  protein_id AT5G17050.1p  transcript_id AT5G17050.1  
At5g17060	chr5:005611056	0.0	W/5611056-5611112,5611397-5611487,5611845-5611960,5612158-5612217,5612297-5612362,5612451-5612639	AT5G17060.1  CDS  gene_syn ATARFB1B, F2K13.210, F2K13_210  gene ATARFB1B  function A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor 1; ARF 1 (GP:385340) {Drosophila melanogaster), other ARFs and ARF-like proteins.  go_component intracellular|GO:0005622||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function GTP binding|GO:0005525|12644670|ISS  product ATARFB1B; GTP binding  note ATARFB1B; FUNCTIONS IN: GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ATARFB1C (ADP-ribosylation factor B1C); GTP binding (TAIR:AT3G03120.1); Has 10573 Blast hits to 10565 proteins in 390 species: Archae - 10; Bacteria - 8; Metazoa - 5756; Fungi - 1144; Plants - 1306; Viruses - 3; Other Eukaryotes - 2346 (source: NCBI BLink).  protein_id AT5G17060.1p  transcript_id AT5G17060.1  protein_id AT5G17060.1p  transcript_id AT5G17060.1  
At5g17070	chr5:005615943	0.0	C/5615943-5616088,5615443-5615523,5615186-5615234,5614992-5615088,5614500-5614552,5614039-5614101,5613688-5613958,5613514-5613587	AT5G17070.1  CDS  gene_syn F2K13.220, F2K13_220  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; Has 156 Blast hits to 156 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 114; Fungi - 14; Plants - 18; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G17070.1p  transcript_id AT5G17070.1  protein_id AT5G17070.1p  transcript_id AT5G17070.1  
At5g17073	chr5:005617432	0.0	W/5617432-5617572	AT5G17073.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G17073.1p  transcript_id AT5G17073.1  protein_id AT5G17073.1p  transcript_id AT5G17073.1  
At5g17080	chr5:005619594	0.0	W/5619594-5619788,5619873-5619957,5620136-5620374,5620480-5620623,5620716-5620949	AT5G17080.1  CDS  gene_syn F2K13.230, F2K13_230  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_component cellular_component|GO:0005575||ND  product cathepsin-related  note cathepsin-related; FUNCTIONS IN: cysteine-type peptidase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, seed; EXPRESSED DURING: F mature embryo stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128); BEST Arabidopsis thaliana protein match is: cysteine proteinase-related (TAIR:AT5G17140.1); Has 384 Blast hits to 384 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 244; Fungi - 0; Plants - 34; Viruses - 3; Other Eukaryotes - 103 (source: NCBI BLink).  protein_id AT5G17080.1p  transcript_id AT5G17080.1  protein_id AT5G17080.1p  transcript_id AT5G17080.1  
At5g17090	chr5:005622125	0.0	C/5622125-5622475,5621904-5622038,5621604-5621810	AT5G17090.1  CDS  gene_syn F2K13.240, F2K13_240  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17120.1); Has 28 Blast hits to 26 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G17090.1p  transcript_id AT5G17090.1  protein_id AT5G17090.1p  transcript_id AT5G17090.1  
At5g17100	chr5:005624398	0.0	C/5624398-5624700,5624040-5624171,5623734-5623952,5623596-5623624,5623448-5623502	AT5G17100.1  CDS  gene_syn F2K13.250, F2K13_250  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17110.1); Has 36 Blast hits to 34 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G17100.1p  transcript_id AT5G17100.1  protein_id AT5G17100.1p  transcript_id AT5G17100.1  
At5g17110	chr5:005627178	0.0	C/5627178-5627474,5626850-5626981,5626563-5626760	AT5G17110.1  CDS  gene_syn F2K13.260, F2K13_260  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17100.1); Has 34 Blast hits to 32 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G17110.1p  transcript_id AT5G17110.1  protein_id AT5G17110.1p  transcript_id AT5G17110.1  
At5g17120	chr5:005629037	0.0	C/5629037-5629324,5628819-5628953,5628529-5628729	AT5G17120.1  CDS  gene_syn F2K13.270, F2K13_270  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17150.1); Has 47 Blast hits to 45 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 3; Plants - 32; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G17120.1p  transcript_id AT5G17120.1  protein_id AT5G17120.1p  transcript_id AT5G17120.1  
At5g17125	chr5:005630538	0.0	W/5630538-5634764	AT5G17125.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 4.1e-182 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)  
At5g17130	chr5:005636972	0.0	W/5636972-5637145,5637246-5637330,5637422-5637534	AT5G17130.1  CDS  gene_syn F2K13.280, F2K13_280  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product cysteine-type peptidase  note cysteine-type peptidase; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128); BEST Arabidopsis thaliana protein match is: cathepsin-related (TAIR:AT5G17080.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G17130.1p  transcript_id AT5G17130.1  protein_id AT5G17130.1p  transcript_id AT5G17130.1  
At5g17140	chr5:005637830	0.0	W/5637830-5637961,5638067-5638273	AT5G17140.1  CDS  gene_syn F2K13.290, F2K13_290  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_component cellular_component|GO:0005575||ND  product cysteine proteinase-related  note cysteine proteinase-related; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: cauline leaf, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Peptidase C1A, papain C-terminal (InterPro:IPR000668); BEST Arabidopsis thaliana protein match is: cathepsin-related (TAIR:AT5G17080.1); Has 2212 Blast hits to 2208 proteins in 316 species: Archae - 2; Bacteria - 6; Metazoa - 1316; Fungi - 0; Plants - 407; Viruses - 86; Other Eukaryotes - 395 (source: NCBI BLink).  protein_id AT5G17140.1p  transcript_id AT5G17140.1  protein_id AT5G17140.1p  transcript_id AT5G17140.1  
At5g17150	chr5:005639320	0.0	C/5639320-5639592,5639096-5639230,5638801-5639001	AT5G17150.1  CDS  gene_syn F2K13.300, F2K13_300  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, embryo, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17120.1); Has 23 Blast hits to 23 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G17150.1p  transcript_id AT5G17150.1  protein_id AT5G17150.1p  transcript_id AT5G17150.1  
At5g17160	chr5:005642314	0.0	C/5642314-5642427,5641193-5641688,5640931-5641107,5640668-5640847,5639843-5640585	AT5G17160.1  CDS  gene_syn F2K13.310, F2K13_310  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03130.1); Has 12169 Blast hits to 8569 proteins in 601 species: Archae - 46; Bacteria - 1807; Metazoa - 3709; Fungi - 1234; Plants - 314; Viruses - 113; Other Eukaryotes - 4946 (source: NCBI BLink).  protein_id AT5G17160.1p  transcript_id AT5G17160.1  protein_id AT5G17160.1p  transcript_id AT5G17160.1  
At5g17165	chr5:005647608	0.0	C/5647608-5647702,5643143-5643398	AT5G17165.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03150.1); Has 24 Blast hits to 24 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G17165.1p  transcript_id AT5G17165.1  protein_id AT5G17165.1p  transcript_id AT5G17165.1  
At5g17170	chr5:005649335	0.0	W/5649335-5649448,5649582-5649794,5649887-5650053,5650435-5650516,5650624-5650692,5650805-5650975	AT5G17170.1  CDS  gene_syn ENH1, MKP11.2, MKP11_2, enhancer of sos3-1  gene ENH1  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function protein binding|GO:0005515||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function metal ion binding|GO:0046872||IEA  go_function metal ion binding|GO:0046872||ISS  product ENH1 (enhancer of sos3-1); electron carrier/ metal ion binding / protein binding  note enhancer of sos3-1 (ENH1); FUNCTIONS IN: protein binding, electron carrier activity, metal ion binding; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Rubredoxin-type Fe(Cys)4 protein (InterPro:IPR004039), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: rubredoxin family protein (TAIR:AT5G51010.1); Has 170 Blast hits to 170 proteins in 70 species: Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT5G17170.1p  transcript_id AT5G17170.1  protein_id AT5G17170.1p  transcript_id AT5G17170.1  
At5g17170	chr5:005649335	0.0	W/5649335-5649448,5649582-5649794,5649887-5650053,5650435-5650520,5650629-5650692,5650805-5650835	AT5G17170.2  CDS  gene_syn ENH1, MKP11.2, MKP11_2, enhancer of sos3-1  gene ENH1  go_component chloroplast|GO:0009507|18431481|IDA  go_function protein binding|GO:0005515||IEA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_function metal ion binding|GO:0046872||ISS  product ENH1 (enhancer of sos3-1); metal ion binding / protein binding  note enhancer of sos3-1 (ENH1); FUNCTIONS IN: protein binding, metal ion binding; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PDZ/DHR/GLGF (InterPro:IPR001478); Has 134 Blast hits to 134 proteins in 63 species: Archae - 0; Bacteria - 84; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G17170.2p  transcript_id AT5G17170.2  protein_id AT5G17170.2p  transcript_id AT5G17170.2  
At5g17180	chr5:005651436	0.0	W/5651436-5651807	AT5G17180.1  CDS  gene_syn MKP11.3, MKP11_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G17180.1p  transcript_id AT5G17180.1  protein_id AT5G17180.1p  transcript_id AT5G17180.1  
At5g17190	chr5:005652310	0.0	W/5652310-5652702	AT5G17190.1  CDS  gene_syn MKP11.4, MKP11_4  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03160.1); Has 58 Blast hits to 58 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G17190.1p  transcript_id AT5G17190.1  protein_id AT5G17190.1p  transcript_id AT5G17190.1  
At5g17200	chr5:005655169	0.0	C/5655169-5655336,5654942-5655076,5654632-5654790,5654239-5654528,5654036-5654144,5653524-5653928	AT5G17200.1  CDS  gene_syn MKP11.14, MKP11_14  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, leaf whorl, sepal, pedicel, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT3G15720.1); Has 2498 Blast hits to 2489 proteins in 344 species: Archae - 2; Bacteria - 528; Metazoa - 8; Fungi - 994; Plants - 886; Viruses - 3; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT5G17200.1p  transcript_id AT5G17200.1  protein_id AT5G17200.1p  transcript_id AT5G17200.1  
At5g17210	chr5:005656519	0.0	W/5656519-5656614,5657343-5657554,5657649-5657970	AT5G17210.1  CDS  gene_syn MKP11.6, MKP11_6  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13380.1); Has 229 Blast hits to 225 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 229; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G17210.1p  transcript_id AT5G17210.1  protein_id AT5G17210.1p  transcript_id AT5G17210.1  
At5g17210	chr5:005656700	0.0	W/5656700-5656702,5657352-5657554,5657649-5657970	AT5G17210.2  CDS  gene_syn MKP11.6, MKP11_6  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61065.1); Has 212 Blast hits to 208 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 212; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G17210.2p  transcript_id AT5G17210.2  protein_id AT5G17210.2p  transcript_id AT5G17210.2  
At5g17220	chr5:005658528	0.0	W/5658528-5658674,5658740-5658788,5658874-5659322	AT5G17220.1  CDS  gene_syn ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, ATGSTF12, GLUTATHIONE S-TRANSFERASE 26, GST26, MKP11.22, MKP11_22, TRANSPARENT TESTA 19, TT19  gene ATGSTF12  function Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). Mutants display no pigments on leaves and stems.  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12); glutathione transferase  note ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12 (ATGSTF12); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTF11 (GLUTATHIONE S-TRANSFERASE F11); glutathione transferase (TAIR:AT3G03190.1); Has 7239 Blast hits to 7227 proteins in 864 species: Archae - 0; Bacteria - 3001; Metazoa - 1676; Fungi - 254; Plants - 653; Viruses - 0; Other Eukaryotes - 1655 (source: NCBI BLink).  protein_id AT5G17220.1p  transcript_id AT5G17220.1  protein_id AT5G17220.1p  transcript_id AT5G17220.1  
At5g17230	chr5:005661643	0.0	C/5661643-5662087,5661515-5661565,5660801-5660973,5660448-5660683,5660107-5660299,5659839-5660009	AT5G17230.1  CDS  gene_syn PHYTOENE SYNTHASE, PSY  function Encodes phytoene synthase.  go_component chloroplast|GO:0009507|18431481|IDA  go_process carotenoid biosynthetic process|GO:0016117|12805607|IMP  go_function geranylgeranyl-diphosphate geranylgeranyltransferase activity|GO:0016767|12805607|TAS  go_function geranylgeranyl-diphosphate geranylgeranyltransferase activity|GO:0016767|8016277|ISS  go_function phytoene synthase activity|GO:0046905|12805607|TAS  product phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase  note PHYTOENE SYNTHASE (PSY); FUNCTIONS IN: phytoene synthase activity, geranylgeranyl-diphosphate geranylgeranyltransferase activity; INVOLVED IN: carotenoid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid synthase (InterPro:IPR008949), Squalene/phytoene synthase (InterPro:IPR002060); Has 4182 Blast hits to 4175 proteins in 617 species: Archae - 36; Bacteria - 1453; Metazoa - 49; Fungi - 51; Plants - 786; Viruses - 0; Other Eukaryotes - 1807 (source: NCBI BLink).  protein_id AT5G17230.1p  transcript_id AT5G17230.1  protein_id AT5G17230.1p  transcript_id AT5G17230.1  
At5g17230	chr5:005661643	0.0	C/5661643-5662087,5661515-5661565,5660801-5660973,5660448-5660683,5660107-5660299,5659839-5660009	AT5G17230.2  CDS  gene_syn PHYTOENE SYNTHASE, PSY  function Encodes phytoene synthase.  go_component chloroplast|GO:0009507|18431481|IDA  go_process carotenoid biosynthetic process|GO:0016117|12805607|IMP  go_function geranylgeranyl-diphosphate geranylgeranyltransferase activity|GO:0016767|12805607|TAS  go_function geranylgeranyl-diphosphate geranylgeranyltransferase activity|GO:0016767|8016277|ISS  go_function phytoene synthase activity|GO:0046905|12805607|TAS  product phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase  note PHYTOENE SYNTHASE (PSY); FUNCTIONS IN: phytoene synthase activity, geranylgeranyl-diphosphate geranylgeranyltransferase activity; INVOLVED IN: carotenoid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid synthase (InterPro:IPR008949), Squalene/phytoene synthase (InterPro:IPR002060); Has 4182 Blast hits to 4175 proteins in 617 species: Archae - 36; Bacteria - 1453; Metazoa - 49; Fungi - 51; Plants - 786; Viruses - 0; Other Eukaryotes - 1807 (source: NCBI BLink).  protein_id AT5G17230.2p  transcript_id AT5G17230.2  protein_id AT5G17230.2p  transcript_id AT5G17230.2  
At5g17230	chr5:005661643	0.0	C/5661643-5662087,5661515-5661565,5661386-5661430,5660801-5660973,5660448-5660683,5660107-5660299,5659839-5660009	AT5G17230.3  CDS  gene_syn PHYTOENE SYNTHASE, PSY  function Encodes phytoene synthase.  go_process carotenoid biosynthetic process|GO:0016117|12805607|IMP  go_function geranylgeranyl-diphosphate geranylgeranyltransferase activity|GO:0016767|12805607|TAS  go_function geranylgeranyl-diphosphate geranylgeranyltransferase activity|GO:0016767|8016277|ISS  go_function phytoene synthase activity|GO:0046905|12805607|TAS  product phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase  note phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase; FUNCTIONS IN: phytoene synthase activity, geranylgeranyl-diphosphate geranylgeranyltransferase activity; INVOLVED IN: carotenoid biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid synthase (InterPro:IPR008949), Squalene/phytoene synthase (InterPro:IPR002060).  protein_id AT5G17230.3p  transcript_id AT5G17230.3  protein_id AT5G17230.3p  transcript_id AT5G17230.3  
At5g17233	chr5:005664160	0.0	W/5664160-5664273	AT5G17233.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G17233.1p  transcript_id AT5G17233.1  protein_id AT5G17233.1p  transcript_id AT5G17233.1  
At5g17240	chr5:005666854	0.0	W/5666854-5666996,5667076-5667226,5667315-5667446,5667590-5667730,5667838-5668086,5668190-5668849	AT5G17240.1  CDS  gene_syn MKP11.9, MKP11_9, SDG40, SET DOMAIN GROUP 40  gene SDG40  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SDG40 (SET DOMAIN GROUP 40)  note SET DOMAIN GROUP 40 (SDG40); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: SET domain-containing protein (TAIR:AT5G14260.3); Has 505 Blast hits to 501 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 197; Fungi - 96; Plants - 134; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT5G17240.1p  transcript_id AT5G17240.1  protein_id AT5G17240.1p  transcript_id AT5G17240.1  
At5g17250	chr5:005673245	0.0	C/5673245-5673516,5673106-5673140,5672898-5673019,5672724-5672813,5672511-5672630,5672327-5672410,5672168-5672245,5671884-5672009,5671716-5671805,5671582-5671617,5671441-5671496,5671185-5671332,5670669-5671101,5670500-5670591,5670148-5670405,5669865-5670084,5669578-5669758,5669342-5669498,5669169-5669252,5668993-5669088	AT5G17250.1  CDS  gene_syn MKP11.10, MKP11_10  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_process GPI anchor biosynthetic process|GO:0006506||ISS  go_function transferase activity|GO:0016740||ISS  product catalytic/ transferase  note catalytic/ transferase; FUNCTIONS IN: transferase activity, catalytic activity; INVOLVED IN: GPI anchor biosynthetic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alkaline-phosphatase-like, core domain (InterPro:IPR017850); BEST Arabidopsis thaliana protein match is: catalytic/ transferase (TAIR:AT2G22530.1); Has 892 Blast hits to 698 proteins in 194 species: Archae - 0; Bacteria - 101; Metazoa - 324; Fungi - 298; Plants - 42; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).  protein_id AT5G17250.1p  transcript_id AT5G17250.1  protein_id AT5G17250.1p  transcript_id AT5G17250.1  
At5g17260	chr5:005677756	0.0	C/5677756-5677912,5676704-5676984,5676287-5676601,5675977-5676201,5675804-5675873,5675323-5675705	AT5G17260.1  CDS  gene_syn Arabidopsis NAC domain containing protein 86, MKP11.11, MKP11_11, anac086  gene anac086  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac086 (Arabidopsis NAC domain containing protein 86); transcription factor  note Arabidopsis NAC domain containing protein 86 (anac086); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac045 (Arabidopsis NAC domain containing protein 45); transcription factor (TAIR:AT3G03200.1); Has 1637 Blast hits to 1634 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1628; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT5G17260.1p  transcript_id AT5G17260.1  protein_id AT5G17260.1p  transcript_id AT5G17260.1  
At5g17262	chr5:005678377	0.0	W/5678377-5678508	AT5G17262.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G17262.1p  transcript_id AT5G17262.1  protein_id AT5G17262.1p  transcript_id AT5G17262.1  
At5g17270	chr5:005679995	0.0	W/5679995-5680407,5680523-5680661,5681073-5681404,5681666-5681747,5681823-5682084,5682389-5682447,5682592-5682681,5682817-5682908,5683009-5683107,5683227-5683304,5683517-5683601,5683680-5683738,5683854-5683923,5684060-5684151,5684320-5684382,5684461-5684527,5684668-5684901,5685037-5685153,5685237-5685389,5685484-5685597	AT5G17270.1  CDS  gene_syn MKP11.12, MKP11_12  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product tetratricopeptide repeat (TPR)-containing protein  note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT5G37130.1); Has 5379 Blast hits to 3587 proteins in 480 species: Archae - 397; Bacteria - 1752; Metazoa - 604; Fungi - 281; Plants - 148; Viruses - 0; Other Eukaryotes - 2197 (source: NCBI BLink).  protein_id AT5G17270.1p  transcript_id AT5G17270.1  protein_id AT5G17270.1p  transcript_id AT5G17270.1  
At5g17280	chr5:005686355	0.0	W/5686355-5686762	AT5G17280.1  CDS  gene_syn MKP11.13, MKP11_13  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 223 Blast hits to 223 proteins in 123 species: Archae - 0; Bacteria - 72; Metazoa - 36; Fungi - 80; Plants - 15; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT5G17280.1p  transcript_id AT5G17280.1  protein_id AT5G17280.1p  transcript_id AT5G17280.1  
At5g17290	chr5:005689717	0.0	C/5689717-5689821,5689338-5689462,5689179-5689245,5688839-5688928,5688347-5688434,5687982-5688125,5687565-5687696,5687160-5687422	AT5G17290.1  CDS  gene_syn APG5, ATG5, AUTOPHAGY 5, MKP11.20, MKP11_20  gene APG5  function Autophagy protein ATG5. Forms a conjugate with ATG12 with an essential role in plant nutrient recycling. Mutants missing ATG5 display early senescence and are hypersensitive to nitrogen or carbon starvation, accompanied by a more rapid loss of organellar and cytoplasmic proteins.  go_component cytoplasm|GO:0005737||IEA  go_process autophagy|GO:0006914|16040659|IMP  go_process autophagy|GO:0006914||ISS  go_process senescence|GO:0010149|16040659|IMP  go_process response to starvation|GO:0042594|16040659|IMP  go_function transporter activity|GO:0005215||ISS  product APG5 (AUTOPHAGY 5); transporter  note AUTOPHAGY 5 (APG5); FUNCTIONS IN: transporter activity; INVOLVED IN: autophagy, response to starvation, senescence; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy protein 5 (InterPro:IPR007239); Has 307 Blast hits to 303 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 146; Fungi - 114; Plants - 23; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT5G17290.1p  transcript_id AT5G17290.1  protein_id AT5G17290.1p  transcript_id AT5G17290.1  
At5g17300	chr5:005692403	0.0	C/5692403-5692435,5691892-5691990,5691699-5691810,5691551-5691612,5691074-5691388,5690435-5690977	AT5G17300.1  CDS  gene_syn MKP11.15, MKP11_15  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT3G10113.1); Has 972 Blast hits to 939 proteins in 111 species: Archae - 0; Bacteria - 3; Metazoa - 150; Fungi - 24; Plants - 644; Viruses - 9; Other Eukaryotes - 142 (source: NCBI BLink).  protein_id AT5G17300.1p  transcript_id AT5G17300.1  protein_id AT5G17300.1p  transcript_id AT5G17300.1  
At5g17310	chr5:005699552	0.0	C/5699552-5699671,5699402-5699479,5699265-5699315,5699086-5699159,5698905-5698977,5698730-5698787,5698499-5698611,5698256-5698288,5697999-5698051,5697836-5697911,5697702-5697758,5697533-5697616,5697342-5697440,5697070-5697246,5696955-5696981	AT5G17310.1  CDS  gene_syn MKP11.26, MKP11_26  go_component plasma membrane|GO:0005886|17644812|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_process metabolic process|GO:0008152||ISS  go_function UTP:glucose-1-phosphate uridylyltransferase activity|GO:0003983||ISS  product UTP--glucose-1-phosphate uridylyltransferase, putative / UDP-glucose pyrophosphorylase, putative / UGPase, putative  note UTP--glucose-1-phosphate uridylyltransferase, putative / UDP-glucose pyrophosphorylase, putative / UGPase, putative; FUNCTIONS IN: UTP:glucose-1-phosphate uridylyltransferase activity, nucleotidyltransferase activity; INVOLVED IN: response to cadmium ion, response to salt stress, metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: UTP--glucose-1-phosphate uridylyltransferase (InterPro:IPR002618); BEST Arabidopsis thaliana protein match is: UGP (UDP-glucose pyrophosphorylase); UTP:glucose-1-phosphate uridylyltransferase/ nucleotidyltransferase (TAIR:AT3G03250.1); Has 715 Blast hits to 710 proteins in 234 species: Archae - 0; Bacteria - 167; Metazoa - 214; Fungi - 153; Plants - 103; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT5G17310.1p  transcript_id AT5G17310.1  protein_id AT5G17310.1p  transcript_id AT5G17310.1  
At5g17310	chr5:005700778	0.0	C/5700778-5700845,5700638-5700685,5700245-5700336,5700034-5700124,5699552-5699612,5699402-5699479,5699265-5699315,5699086-5699159,5698905-5698977,5698730-5698787,5698499-5698611,5698256-5698288,5697999-5698051,5697836-5697911,5697702-5697758,5697533-5697616,5697342-5697440,5697070-5697246,5696955-5696981	AT5G17310.2  CDS  gene_syn MKP11.26, MKP11_26  go_component plasma membrane|GO:0005886|17644812|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_process metabolic process|GO:0008152||ISS  go_function UTP:glucose-1-phosphate uridylyltransferase activity|GO:0003983||ISS  product UTP--glucose-1-phosphate uridylyltransferase, putative / UDP-glucose pyrophosphorylase, putative / UGPase, putative  note UTP--glucose-1-phosphate uridylyltransferase, putative / UDP-glucose pyrophosphorylase, putative / UGPase, putative; FUNCTIONS IN: UTP:glucose-1-phosphate uridylyltransferase activity, nucleotidyltransferase activity; INVOLVED IN: response to cadmium ion, response to salt stress, metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: UTP--glucose-1-phosphate uridylyltransferase, subgroup (InterPro:IPR016267), UTP--glucose-1-phosphate uridylyltransferase (InterPro:IPR002618); BEST Arabidopsis thaliana protein match is: UGP (UDP-glucose pyrophosphorylase); UTP:glucose-1-phosphate uridylyltransferase/ nucleotidyltransferase (TAIR:AT3G03250.1); Has 871 Blast hits to 866 proteins in 241 species: Archae - 0; Bacteria - 171; Metazoa - 281; Fungi - 198; Plants - 121; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).  protein_id AT5G17310.2p  transcript_id AT5G17310.2  protein_id AT5G17310.2p  transcript_id AT5G17310.2  
At5g17320	chr5:005707510	0.0	C/5707510-5707637,5707302-5707419,5706912-5707103,5705643-5706143,5705430-5705528,5705134-5705343,5704656-5704842,5704210-5704478,5704015-5704104,5703380-5703742	AT5G17320.1  CDS  gene_syn HDG9, HOMEODOMAIN GLABROUS 9, MKP11.28, MKP11_28  gene HDG9  function Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function sequence-specific DNA binding|GO:0043565|16778018|IDA  product HDG9 (HOMEODOMAIN GLABROUS 9); DNA binding / sequence-specific DNA binding / transcription factor  note HOMEODOMAIN GLABROUS 9 (HDG9); FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: tapetum, male gametophyte, anther, female gametophyte; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: HDG10 (HOMEODOMAIN GLABROUS 10); DNA binding / transcription factor (TAIR:AT1G34650.1); Has 3623 Blast hits to 3616 proteins in 321 species: Archae - 0; Bacteria - 0; Metazoa - 2266; Fungi - 148; Plants - 1174; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT5G17320.1p  transcript_id AT5G17320.1  protein_id AT5G17320.1p  transcript_id AT5G17320.1  
At5g17330	chr5:005711141	0.0	W/5711141-5711226,5711310-5711514,5712838-5713038,5713117-5713331,5713420-5713673,5714072-5714124,5714208-5714383,5714521-5714839	AT5G17330.1  CDS  gene_syn GAD, GAD1, GLUTAMATE DECARBOXYLASE, GLUTAMATE DECARBOXYLASE 1, MKP11.30, MKP11_30  gene GAD  function Encodes one of two isoforms of glutamate decarboxylase.  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function glutamate decarboxylase activity|GO:0004351|9700069|IDA  go_function calmodulin binding|GO:0005516|11782485|IEP  go_function calmodulin binding|GO:0005516|11782485|TAS  go_function calmodulin binding|GO:0005516|9700069|IDA  product GAD; calmodulin binding / glutamate decarboxylase  note GAD; FUNCTIONS IN: calmodulin binding, glutamate decarboxylase activity; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Glutamate decarboxylase (InterPro:IPR010107), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: GAD4 (glutamate decarboxylase 4); calmodulin binding (TAIR:AT2G02010.1); Has 1633 Blast hits to 1630 proteins in 485 species: Archae - 122; Bacteria - 812; Metazoa - 130; Fungi - 221; Plants - 174; Viruses - 2; Other Eukaryotes - 172 (source: NCBI BLink).  protein_id AT5G17330.1p  transcript_id AT5G17330.1  protein_id AT5G17330.1p  transcript_id AT5G17330.1  
At5g17340	chr5:005715736	0.0	C/5715736-5716218	AT5G17340.1  CDS  gene_syn MKP11.1, MKP11_1  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03272.1); Has 57 Blast hits to 57 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G17340.1p  transcript_id AT5G17340.1  protein_id AT5G17340.1p  transcript_id AT5G17340.1  
At5g17350	chr5:005718853	0.0	W/5718853-5719404	AT5G17350.1  CDS  gene_syn MKP11.31, MKP11_31  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03280.1); Has 60 Blast hits to 60 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G17350.1p  transcript_id AT5G17350.1  protein_id AT5G17350.1p  transcript_id AT5G17350.1  
At5g17360	chr5:005720620	0.0	W/5720620-5721147	AT5G17360.1  CDS  gene_syn MKP11.17, MKP11_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: ATP dependent DNA ligase family protein (TAIR:AT1G66730.1); Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G17360.1p  transcript_id AT5G17360.1  protein_id AT5G17360.1p  transcript_id AT5G17360.1  
At5g17370	chr5:005724653	0.0	C/5724653-5724719,5724429-5724553,5724145-5724288,5723930-5724060,5723565-5723775,5723314-5723416,5723057-5723157,5722802-5722868,5722538-5722628,5722394-5722451,5722196-5722313,5721974-5722084,5721801-5721877	AT5G17370.1  CDS  gene_syn MKP11.21, MKP11_21  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product WD-40 repeat family protein  note WD-40 repeat family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); Has 197 Blast hits to 196 proteins in 63 species: Archae - 0; Bacteria - 15; Metazoa - 92; Fungi - 39; Plants - 33; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT5G17370.1p  transcript_id AT5G17370.1  protein_id AT5G17370.1p  transcript_id AT5G17370.1  
At5g17380	chr5:005725317	0.0	C/5725317-5726720,5724920-5725234	AT5G17380.1  CDS  gene_syn T10B6.40, T10B6_40  go_function magnesium ion binding|GO:0000287||IEA  go_function catalytic activity|GO:0003824||IEA  go_function transferase activity|GO:0016740||IEA  go_function thiamin pyrophosphate binding|GO:0030976||IEA  go_component cellular_component|GO:0005575||ND  go_function pyruvate decarboxylase activity|GO:0004737||ISS  product pyruvate decarboxylase family protein  note pyruvate decarboxylase family protein; FUNCTIONS IN: pyruvate decarboxylase activity, magnesium ion binding, thiamin pyrophosphate binding, transferase activity, catalytic activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TPP-binding enzymes, conserved site (InterPro:IPR000399), Thiamine pyrophosphate enzyme, central region (InterPro:IPR012000), Thiamine pyrophosphate enzyme, N-terminal TPP binding region (InterPro:IPR012001), Thiamine pyrophosphate enzyme, C-terminal TPP-binding (InterPro:IPR011766); BEST Arabidopsis thaliana protein match is: CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1); acetolactate synthase/ pyruvate decarboxylase (TAIR:AT3G48560.1); Has 19451 Blast hits to 19340 proteins in 1483 species: Archae - 251; Bacteria - 8187; Metazoa - 204; Fungi - 529; Plants - 438; Viruses - 2; Other Eukaryotes - 9840 (source: NCBI BLink).  protein_id AT5G17380.1p  transcript_id AT5G17380.1  protein_id AT5G17380.1p  transcript_id AT5G17380.1  
At5g17390	chr5:005727640	0.0	W/5727640-5728114,5728201-5728286,5728392-5728688	AT5G17390.1  CDS  gene_syn T10B6.50, T10B6_50  go_process response to stress|GO:0006950||IEA  go_process response to stress|GO:0006950||ISS  go_function molecular_function|GO:0003674||ND  product universal stress protein (USP) family protein  note universal stress protein (USP) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729); BEST Arabidopsis thaliana protein match is: universal stress protein (USP) family protein (TAIR:AT3G03290.1); Has 1363 Blast hits to 873 proteins in 106 species: Archae - 0; Bacteria - 47; Metazoa - 862; Fungi - 64; Plants - 114; Viruses - 68; Other Eukaryotes - 208 (source: NCBI BLink).  protein_id AT5G17390.1p  transcript_id AT5G17390.1  protein_id AT5G17390.1p  transcript_id AT5G17390.1  
At5g17400	chr5:005729841	0.0	C/5729841-5730104,5729382-5729753,5729015-5729299	AT5G17400.1  CDS  gene_syn ENDOPLASMIC RETICULUM-DENINE NUCLEOTIDE TRANSPORTER 1, ER-ANT1, T10B6.60, T10B6_60  gene ER-ANT1  function This gene is predicted to encode an ER-localized adenine nucleotide transporter with six putative transmembrane helices. It appears to act as a ATP:ADP antiporter when expressed in E.coli plasma membranes. Transcript levels for several ER-localized chaperones (e.g. BIP1/2) and other ATP-requiring ER proteins (e.g. CPK2) are reduced in er-ant1 knock-out lines, suggesting a lack of adequate ATP transport into the ER in these mutants. They also have reduced seed oil and seed protein levels.  go_component mitochondrial inner membrane|GO:0005743||ISS  go_component endoplasmic reticulum membrane|GO:0005789|18296626|IDA  go_process transport|GO:0006810||ISS  go_process shoot system development|GO:0022621|18296626|IMP  go_process seed development|GO:0048316|18296626|IMP  go_process root development|GO:0048364|18296626|IMP  go_process adenine nucleotide transport|GO:0051503|18296626|IDA  go_function ATP:ADP antiporter activity|GO:0005471|18296626|IDA  go_function ATP:ADP antiporter activity|GO:0005471||ISS  go_function binding|GO:0005488||ISS  product ER-ANT1 (ENDOPLASMIC RETICULUM-DENINE NUCLEOTIDE TRANSPORTER 1); ATP:ADP antiporter/ binding  note ENDOPLASMIC RETICULUM-DENINE NUCLEOTIDE TRANSPORTER 1 (ER-ANT1); FUNCTIONS IN: binding, ATP:ADP antiporter activity; INVOLVED IN: shoot system development, transport, adenine nucleotide transport, seed development, root development; LOCATED IN: mitochondrial inner membrane, endoplasmic reticulum membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: AAC3 (ADP/ATP CARRIER 3); ATP:ADP antiporter/ binding (TAIR:AT4G28390.1); Has 14870 Blast hits to 9076 proteins in 350 species: Archae - 0; Bacteria - 0; Metazoa - 8089; Fungi - 3447; Plants - 2058; Viruses - 0; Other Eukaryotes - 1276 (source: NCBI BLink).  protein_id AT5G17400.1p  transcript_id AT5G17400.1  protein_id AT5G17400.1p  transcript_id AT5G17400.1  
At5g17410	chr5:005730651	0.0	W/5730651-5730734,5730850-5730908,5731024-5731072,5731376-5731510,5731944-5732075,5732614-5732697,5732775-5732873,5732973-5733064,5733347-5733419,5733494-5733646,5733735-5733854,5733941-5733994,5734139-5734222,5734339-5734413,5734500-5734610,5734844-5734969,5735081-5735188,5735654-5735716,5735793-5735867,5736023-5736162,5736292-5736415	AT5G17410.2  CDS  gene_syn T10B6.70, T10B6_70  go_component spindle pole|GO:0000922||IEA  go_component microtubule organizing center|GO:0005815||IEA  go_process microtubule cytoskeleton organization|GO:0000226||IEA  product tubulin family protein  note tubulin family protein; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: spindle pole, microtubule organizing center; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: SPC98 (SPINDLE POLE BODY COMPONENT 98); tubulin binding (TAIR:AT5G06680.1); Has 1020 Blast hits to 940 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 554; Fungi - 217; Plants - 91; Viruses - 0; Other Eukaryotes - 158 (source: NCBI BLink).  protein_id AT5G17410.2p  transcript_id AT5G17410.2  protein_id AT5G17410.2p  transcript_id AT5G17410.2  
At5g17410	chr5:005730651	0.0	W/5730651-5730734,5730850-5730908,5731027-5731072,5731376-5731510,5731944-5732075,5732614-5732697,5732775-5732873,5732973-5733064,5733347-5733419,5733494-5733646,5733735-5733854,5733941-5733994,5734139-5734222,5734339-5734413,5734500-5734610,5734844-5734969,5735081-5735188,5735654-5735716,5735793-5735867,5736023-5736162,5736292-5736415	AT5G17410.1  CDS  gene_syn T10B6.70, T10B6_70  go_component spindle pole|GO:0000922||IEA  go_component microtubule organizing center|GO:0005815||IEA  go_process microtubule cytoskeleton organization|GO:0000226||IEA  product tubulin family protein  note tubulin family protein; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: spindle pole, microtubule organizing center; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: SPC98 (SPINDLE POLE BODY COMPONENT 98); tubulin binding (TAIR:AT5G06680.1); Has 1014 Blast hits to 934 proteins in 154 species: Archae - 0; Bacteria - 0; Metazoa - 548; Fungi - 217; Plants - 91; Viruses - 0; Other Eukaryotes - 158 (source: NCBI BLink).  protein_id AT5G17410.1p  transcript_id AT5G17410.1  protein_id AT5G17410.1p  transcript_id AT5G17410.1  
At5g17420	chr5:005741333	0.0	C/5741333-5741407,5740735-5740930,5740327-5740605,5739979-5740072,5739618-5739884,5739191-5739536,5738840-5739103,5738550-5738762,5738257-5738470,5737965-5738161,5737521-5737874,5736859-5737440	AT5G17420.1  CDS  gene_syn ATCESA7, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, CELLULOSE SYNTHASE CATALYTIC SUBUNIT, CESA7, IRREGULAR XYLEM 3, IRX3, MUR10, MURUS 10, T10B6.80, T10B6_80  gene IRX3  function Encodes a xylem-specific cellulose synthase that is phosphorylated on one or more serine residues (on either S185 or one of S180 or S181).  go_component chloroplast|GO:0009507|18431481|IDA  go_component plasma membrane|GO:0005886|10330464|TAS  go_process plant-type cell wall biogenesis|GO:0009832|9301086|IMP  go_process secondary cell wall biogenesis|GO:0009834|10330464|IMP  go_process rhamnogalacturonan I side chain metabolic process|GO:0010400|17041031|IMP  go_process cellulose biosynthetic process|GO:0030244|10330464|IMP  go_process cellulose biosynthetic process|GO:0030244|12165296|IMP  go_function cellulose synthase activity|GO:0016759|10330464|IMP  go_function cellulose synthase activity|GO:0016759||ISS  product IRX3 (IRREGULAR XYLEM 3); cellulose synthase  note IRREGULAR XYLEM 3 (IRX3); FUNCTIONS IN: cellulose synthase activity; INVOLVED IN: plant-type cell wall biogenesis, cellulose biosynthetic process, rhamnogalacturonan I side chain metabolic process, secondary cell wall biogenesis; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1); cellulose synthase/ transferase, transferring glycosyl groups (TAIR:AT5G05170.1); Has 2014 Blast hits to 1926 proteins in 417 species: Archae - 4; Bacteria - 712; Metazoa - 0; Fungi - 25; Plants - 1216; Viruses - 3; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT5G17420.1p  transcript_id AT5G17420.1  protein_id AT5G17420.1p  transcript_id AT5G17420.1  
At5g17430	chr5:005745337	0.0	C/5745337-5745568,5744592-5745006,5744282-5744364,5744157-5744165,5743975-5744063,5743732-5743805,5743556-5743606,5743349-5743425,5742542-5743266	AT5G17430.1  CDS  gene_syn BABY BOOM, BBM, T10B6.90, T10B6_90  gene BBM  function Encodes an AP2-domain containing protein similar to ANT. Expressed in embryos and lateral root primordium.  go_component nucleus|GO:0005634|10948255|IC  go_process regulation of transcription, DNA-dependent|GO:0006355|8742706|TAS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process organ morphogenesis|GO:0009887|8742707|ISS  go_process organ morphogenesis|GO:0009887|9636071|IMP  go_function DNA binding|GO:0003677|9192694|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|10948255|ISS  go_function transcription factor activity|GO:0003700|10948255|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product BBM (BABY BOOM); DNA binding / transcription factor  note BABY BOOM (BBM); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: organ morphogenesis, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: sperm cell, embryo, root tip, lateral root primordium; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: PLT2 (PLETHORA 2); transcription factor (TAIR:AT1G51190.1); Has 5007 Blast hits to 3597 proteins in 224 species: Archae - 0; Bacteria - 8; Metazoa - 102; Fungi - 9; Plants - 4445; Viruses - 2; Other Eukaryotes - 441 (source: NCBI BLink).  protein_id AT5G17430.1p  transcript_id AT5G17430.1  protein_id AT5G17430.1p  transcript_id AT5G17430.1  
At5g17440	chr5:005749849	0.0	W/5749849-5749995,5750270-5750322,5750449-5750617,5750713-5750776,5751029-5751108,5751191-5751338,5751695-5751756,5751996-5752058,5752434-5752492,5752796-5752877,5752963-5753006,5753094-5753318,5753397-5753415	AT5G17440.1  CDS  gene_syn K3M16.10, K3M16_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product LUC7 N_terminus domain-containing protein  note LUC7 N_terminus domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LUC7 related (InterPro:IPR004882); BEST Arabidopsis thaliana protein match is: UNE6 (unfertilized embryo sac 6) (TAIR:AT3G03340.1); Has 14043 Blast hits to 6841 proteins in 319 species: Archae - 18; Bacteria - 209; Metazoa - 7915; Fungi - 2120; Plants - 1070; Viruses - 19; Other Eukaryotes - 2692 (source: NCBI BLink).  protein_id AT5G17440.1p  transcript_id AT5G17440.1  protein_id AT5G17440.1p  transcript_id AT5G17440.1  
At5g17450	chr5:005755386	0.0	W/5755386-5755463,5755806-5755881,5756448-5756743	AT5G17450.1  CDS  gene_syn K3M16.20, K3M16_20  go_function metal ion binding|GO:0046872||IEA  go_process metal ion transport|GO:0030001|9701579|IGI  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related  note heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related (TAIR:AT1G71050.1); Has 719 Blast hits to 670 proteins in 50 species: Archae - 0; Bacteria - 8; Metazoa - 5; Fungi - 27; Plants - 679; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G17450.1p  transcript_id AT5G17450.1  protein_id AT5G17450.1p  transcript_id AT5G17450.1  
At5g17450	chr5:005755827	0.0	W/5755827-5755881,5756448-5756743	AT5G17450.2  CDS  gene_syn K3M16.20, K3M16_20  go_function metal ion binding|GO:0046872||IEA  go_process metal ion transport|GO:0030001|9701579|IGI  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related  note heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related (TAIR:AT1G71050.1); Has 552 Blast hits to 551 proteins in 39 species: Archae - 0; Bacteria - 8; Metazoa - 2; Fungi - 16; Plants - 526; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G17450.2p  transcript_id AT5G17450.2  protein_id AT5G17450.2p  transcript_id AT5G17450.2  
At5g17460	chr5:005758821	0.0	C/5758821-5758867,5758654-5758733,5757582-5758384	AT5G17460.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process response to salt stress|GO:0009651|11351099|IEP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: mitochondrion; Has 417 Blast hits to 394 proteins in 100 species: Archae - 0; Bacteria - 14; Metazoa - 146; Fungi - 69; Plants - 28; Viruses - 4; Other Eukaryotes - 156 (source: NCBI BLink).  protein_id AT5G17460.1p  transcript_id AT5G17460.1  protein_id AT5G17460.1p  transcript_id AT5G17460.1  
At5g17470	chr5:005760966	0.0	C/5760966-5761406	AT5G17470.1  CDS  gene_syn K3M16.40, K3M16_40  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calmodulin-related protein, putative  note calmodulin-related protein, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin-related protein, putative (TAIR:AT2G36180.1); Has 18504 Blast hits to 11359 proteins in 1205 species: Archae - 0; Bacteria - 99; Metazoa - 8087; Fungi - 3863; Plants - 3539; Viruses - 0; Other Eukaryotes - 2916 (source: NCBI BLink).  protein_id AT5G17470.1p  transcript_id AT5G17470.1  protein_id AT5G17470.1p  transcript_id AT5G17470.1  
At5g17480	chr5:005762689	0.0	W/5762689-5762940	AT5G17480.1  CDS  gene_syn APC1, ARABIDOPSIS POLLEN CALCIUM-BINDING PROTEIN 1, K3M16.50, K3M16_50  gene APC1  go_function calcium ion binding|GO:0005509||IEA  go_component cytoplasm|GO:0005737|10398714|IDA  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product APC1 (ARABIDOPSIS POLLEN CALCIUM-BINDING PROTEIN 1); calcium ion binding  note ARABIDOPSIS POLLEN CALCIUM-BINDING PROTEIN 1 (APC1); FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytoplasm; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: polcalcin, putative / calcium-binding pollen allergen, putative (TAIR:AT3G03430.1); Has 8630 Blast hits to 5694 proteins in 908 species: Archae - 0; Bacteria - 43; Metazoa - 3439; Fungi - 1551; Plants - 2355; Viruses - 0; Other Eukaryotes - 1242 (source: NCBI BLink).  protein_id AT5G17480.1p  transcript_id AT5G17480.1  protein_id AT5G17480.1p  transcript_id AT5G17480.1  
At5g17490	chr5:005764316	0.0	C/5764316-5765887	AT5G17490.1  CDS  gene_syn K3M16.60, K3M16_60, RGA-LIKE PROTEIN 3, RGL3  gene RGL3  function DELLA subfamily member involved in GA signal transduction  go_component nucleus|GO:0005634|11826301|TAS  go_process response to gibberellin stimulus|GO:0009739|11826301|ISS  go_process response to gibberellin stimulus|GO:0009739|17333251|IEP  go_process gibberellic acid mediated signaling|GO:0009740|11826301|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11826301|TAS  product RGL3 (RGA-LIKE PROTEIN 3); transcription factor  note RGA-LIKE PROTEIN 3 (RGL3); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to gibberellin stimulus, gibberellic acid mediated signaling; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: RGL2 (RGA-LIKE 2); transcription factor (TAIR:AT3G03450.1); Has 1630 Blast hits to 1559 proteins in 199 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 1626; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G17490.1p  transcript_id AT5G17490.1  protein_id AT5G17490.1p  transcript_id AT5G17490.1  
At5g17500	chr5:005767379	0.0	W/5767379-5767783,5768065-5768312,5768629-5768955,5769047-5769243,5769316-5769719	AT5G17500.1  CDS  gene_syn K3M16.70, K3M16_70  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 5 protein / cellulase family protein  note glycosyl hydrolase family 5 protein / cellulase family protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 5 protein / cellulase family protein (TAIR:AT1G13130.1); Has 348 Blast hits to 341 proteins in 115 species: Archae - 4; Bacteria - 191; Metazoa - 0; Fungi - 68; Plants - 65; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT5G17500.1p  transcript_id AT5G17500.1  protein_id AT5G17500.1p  transcript_id AT5G17500.1  
At5g17510	chr5:005771865	0.0	C/5771865-5772343,5770518-5771148	AT5G17510.1  CDS  gene_syn K3M16.80, K3M16_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03460.1); Has 22577 Blast hits to 10768 proteins in 507 species: Archae - 4; Bacteria - 485; Metazoa - 8864; Fungi - 2539; Plants - 1455; Viruses - 66; Other Eukaryotes - 9164 (source: NCBI BLink).  protein_id AT5G17510.1p  transcript_id AT5G17510.1  protein_id AT5G17510.1p  transcript_id AT5G17510.1  
At5g17520	chr5:005774968	0.0	C/5774968-5775231,5774693-5774866,5774298-5774588,5774073-5774162,5773518-5773619,5773310-5773428,5773152-5773214,5773017-5773078,5772796-5772878	AT5G17520.1  CDS  gene_syn K3M16.90, K3M16_90, MALTOSE EXCESS 1, MEX1, RCP1, ROOT CAP 1  gene RCP1  function Encodes a maltose transporter that is expressed in leaves and roots. Mutations at the MEX1 locus cause accumulation of both starch and maltose in leaves, with maltose levels at least 40 times higher than that of wild-type. This gene encodes a protein located in the chloroplast envelope.  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast inner membrane|GO:0009706|12766230|IDA  go_component chloroplast inner membrane|GO:0009706|15862090|TAS  go_component chloroplast envelope|GO:0009941|14704427|IDA  go_process maltose metabolic process|GO:0000023|14704427|IMP  go_process starch catabolic process|GO:0005983|14704427|IMP  go_process starch catabolic process|GO:0005983|15862090|TAS  go_process cell communication|GO:0007154|10536027|IMP  go_process multicellular organismal development|GO:0007275|10536027|IMP  go_process response to gravity|GO:0009629|10536027|IMP  go_function maltose transmembrane transporter activity|GO:0005363|14704427|IDA  go_function maltose transmembrane transporter activity|GO:0005363|15862090|TAS  product RCP1 (ROOT CAP 1); maltose transmembrane transporter  note ROOT CAP 1 (RCP1); FUNCTIONS IN: maltose transmembrane transporter activity; INVOLVED IN: multicellular organismal development, response to gravity, starch catabolic process, maltose metabolic process, cell communication; LOCATED IN: chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17523.1); Has 40 Blast hits to 40 proteins in 12 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G17520.1p  transcript_id AT5G17520.1  protein_id AT5G17520.1p  transcript_id AT5G17520.1  
At5g17523	chr5:005776968	0.0	C/5776968-5777231,5776693-5776866,5776244-5776588	AT5G17523.1  CDS  function Similar to Maltose excess protein 1  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: RCP1 (ROOT CAP 1); maltose transmembrane transporter (TAIR:AT5G17520.1); Has 35 Blast hits to 35 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G17523.1p  transcript_id AT5G17523.1  protein_id AT5G17523.1p  transcript_id AT5G17523.1  
At5g17530	chr5:005778168	0.0	W/5778168-5778291,5778456-5778522,5778651-5778831,5779033-5779085,5779313-5779401,5779526-5779759,5779880-5779944,5780071-5780131,5780207-5780324,5780396-5780477,5780580-5780652,5780724-5780785,5781022-5781117,5781197-5781351,5781424-5781520,5781603-5781680,5781753-5781863	AT5G17530.1  CDS  gene_syn K10A8.10, K10A8_10  go_component chloroplast|GO:0009507|18431481|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function intramolecular transferase activity, phosphotransferases|GO:0016868||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function intramolecular transferase activity, phosphotransferases|GO:0016868||ISS  product phosphoglucosamine mutase family protein  note phosphoglucosamine mutase family protein; FUNCTIONS IN: intramolecular transferase activity, phosphotransferases; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-D-phosphohexomutase, alpha/beta/alpha domain II (InterPro:IPR005845), Alpha-D-phosphohexomutase, alpha/beta/alpha I, II and III (InterPro:IPR016055), Alpha-D-phosphohexomutase, N-terminal (InterPro:IPR005841), Alpha-D-phosphohexomutase, alpha/beta/alpha domain I (InterPro:IPR005844); BEST Arabidopsis thaliana protein match is: phosphoglucomutase, putative / glucose phosphomutase, putative (TAIR:AT1G70820.1); Has 12780 Blast hits to 12779 proteins in 1622 species: Archae - 265; Bacteria - 7047; Metazoa - 231; Fungi - 99; Plants - 40; Viruses - 0; Other Eukaryotes - 5098 (source: NCBI BLink).  protein_id AT5G17530.1p  transcript_id AT5G17530.1  protein_id AT5G17530.1p  transcript_id AT5G17530.1  
At5g17530	chr5:005778168	0.0	W/5778168-5778291,5778456-5778522,5778651-5778831,5779033-5779085,5779313-5779401,5779526-5779759,5779880-5779944,5780071-5780131,5780207-5780324,5780396-5780477,5780580-5780652,5780724-5780785,5781022-5781117,5781197-5781351,5781424-5781520,5781603-5781680,5781753-5781863	AT5G17530.2  CDS  gene_syn K10A8.10, K10A8_10  go_component chloroplast|GO:0009507|18431481|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function intramolecular transferase activity, phosphotransferases|GO:0016868||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function intramolecular transferase activity, phosphotransferases|GO:0016868||ISS  product phosphoglucosamine mutase family protein  note phosphoglucosamine mutase family protein; FUNCTIONS IN: intramolecular transferase activity, phosphotransferases; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-D-phosphohexomutase, alpha/beta/alpha domain II (InterPro:IPR005845), Alpha-D-phosphohexomutase, alpha/beta/alpha I, II and III (InterPro:IPR016055), Alpha-D-phosphohexomutase, N-terminal (InterPro:IPR005841), Alpha-D-phosphohexomutase, alpha/beta/alpha domain I (InterPro:IPR005844); BEST Arabidopsis thaliana protein match is: phosphoglucomutase, putative / glucose phosphomutase, putative (TAIR:AT1G70820.1); Has 12780 Blast hits to 12779 proteins in 1622 species: Archae - 265; Bacteria - 7047; Metazoa - 231; Fungi - 99; Plants - 40; Viruses - 0; Other Eukaryotes - 5098 (source: NCBI BLink).  protein_id AT5G17530.2p  transcript_id AT5G17530.2  protein_id AT5G17530.2p  transcript_id AT5G17530.2  
At5g17540	chr5:005783242	0.0	C/5783242-5783682,5782061-5783005	AT5G17540.1  CDS  gene_syn K10A8.20, K10A8_20  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: CHAT (acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase); acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (TAIR:AT3G03480.1); Has 1234 Blast hits to 1219 proteins in 99 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 20; Plants - 1211; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G17540.1p  transcript_id AT5G17540.1  protein_id AT5G17540.1p  transcript_id AT5G17540.1  
At5g17550	chr5:005788121	0.0	C/5788121-5788166,5787954-5787993,5787496-5787784,5786871-5787187,5786743-5786788	AT5G17550.1  CDS  gene_syn K10A8.30, K10A8_30, PEROXIN 19-2, PEX19-2  gene PEX19-2  go_component peroxisome|GO:0005777||IEA  go_component peroxisome|GO:0005777||ISS  go_process peroxisome organization|GO:0007031|17478547|IMP  go_process peroxisome organization|GO:0007031||ISS  go_function molecular_function|GO:0003674||ND  product PEX19-2  note PEX19-2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: peroxisome organization; LOCATED IN: peroxisome; CONTAINS InterPro DOMAIN/s: Pex19 protein (InterPro:IPR006708); BEST Arabidopsis thaliana protein match is: PEX19-1 (peroxin 19-1) (TAIR:AT3G03490.1); Has 291 Blast hits to 285 proteins in 122 species: Archae - 0; Bacteria - 4; Metazoa - 130; Fungi - 93; Plants - 19; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT5G17550.1p  transcript_id AT5G17550.1  protein_id AT5G17550.1p  transcript_id AT5G17550.1  
At5g17560	chr5:005788474	0.0	W/5788474-5788797,5789133-5789200,5789530-5789671	AT5G17560.1  CDS  gene_syn K10A8.40, K10A8_40  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function transcription regulator activity|GO:0030528||ISS  product BolA-like family protein  note BolA-like family protein; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BolA-like protein (InterPro:IPR002634); BEST Arabidopsis thaliana protein match is: BolA-like family protein (TAIR:AT1G55805.1); Has 1368 Blast hits to 1368 proteins in 267 species: Archae - 2; Bacteria - 509; Metazoa - 31; Fungi - 15; Plants - 67; Viruses - 0; Other Eukaryotes - 744 (source: NCBI BLink).  protein_id AT5G17560.1p  transcript_id AT5G17560.1  protein_id AT5G17560.1p  transcript_id AT5G17560.1  
At5g17570	chr5:005792948	0.0	W/5792948-5793070,5793155-5793228,5793305-5793386,5793484-5793534,5793625-5793725,5793807-5793960,5794035-5794253,5794324-5794441,5794525-5794580	AT5G17570.1  CDS  gene_syn K10A8.50, K10A8_50  go_function endodeoxyribonuclease activity, producing 5 -phosphomonoesters|GO:0016888||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function deoxyribonuclease activity|GO:0004536||ISS  product tatD-related deoxyribonuclease family protein  note tatD-related deoxyribonuclease family protein; FUNCTIONS IN: endodeoxyribonuclease activity, producing 5 -phosphomonoesters, deoxyribonuclease activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Deoxyribonuclease, TatD Mg-dependent (InterPro:IPR012278), Deoxyribonuclease, TatD (InterPro:IPR015992), Deoxyribonuclease, TatD-related (InterPro:IPR001130); BEST Arabidopsis thaliana protein match is: tatD-related deoxyribonuclease family protein (TAIR:AT3G03500.1); Has 6528 Blast hits to 6528 proteins in 1448 species: Archae - 114; Bacteria - 3822; Metazoa - 246; Fungi - 172; Plants - 44; Viruses - 0; Other Eukaryotes - 2130 (source: NCBI BLink).  protein_id AT5G17570.1p  transcript_id AT5G17570.1  protein_id AT5G17570.1p  transcript_id AT5G17570.1  
At5g17580	chr5:005795302	0.0	W/5795302-5795367,5795451-5797031	AT5G17580.1  CDS  gene_syn K10A8.60, K10A8_60  go_process response to light stimulus|GO:0009416||IEA  go_function signal transducer activity|GO:0004871||IEA  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process response to light stimulus|GO:0009416||ISS  go_function signal transducer activity|GO:0004871||ISS  product phototropic-responsive NPH3 family protein  note phototropic-responsive NPH3 family protein; FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, sepal; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: phototropic-responsive NPH3 family protein (TAIR:AT3G03510.1); Has 396 Blast hits to 387 proteins in 21 species: Archae - 3; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 386; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G17580.1p  transcript_id AT5G17580.1  protein_id AT5G17580.1p  transcript_id AT5G17580.1  
At5g17590	chr5:005797371	0.0	C/5797371-5797949	AT5G17590.1  CDS  gene_syn K10A8.70, K10A8_70  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product prothymosin alpha-related  note prothymosin alpha-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 4; Plants - 11; Viruses - 1; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT5G17590.1p  transcript_id AT5G17590.1  protein_id AT5G17590.1p  transcript_id AT5G17590.1  
At5g17600	chr5:005800029	0.0	C/5800029-5801117	AT5G17600.1  CDS  gene_syn K10A8.80, K10A8_80  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G03550.1); Has 6658 Blast hits to 6638 proteins in 240 species: Archae - 0; Bacteria - 2; Metazoa - 2035; Fungi - 546; Plants - 2819; Viruses - 87; Other Eukaryotes - 1169 (source: NCBI BLink).  protein_id AT5G17600.1p  transcript_id AT5G17600.1  protein_id AT5G17600.1p  transcript_id AT5G17600.1  
At5g17610	chr5:005804011	0.0	W/5804011-5804115,5804193-5804242,5804576-5804681,5804777-5804835,5805000-5805045	AT5G17610.1  CDS  gene_syn K10A8.90, K10A8_90  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 44 Blast hits to 44 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G17610.1p  transcript_id AT5G17610.1  protein_id AT5G17610.1p  transcript_id AT5G17610.1  
At5g17620	chr5:005808322	0.0	C/5808322-5808455,5808054-5808139,5807895-5807956,5807668-5807759,5807387-5807512,5807012-5807102,5806562-5806669,5806228-5806326,5805934-5806125	AT5G17620.1  CDS  gene_syn K10A8.100, K10A8_100  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plant nuclear matrix 1 (InterPro:IPR010604); Has 62 Blast hits to 62 proteins in 32 species: Archae - 0; Bacteria - 19; Metazoa - 8; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G17620.1p  transcript_id AT5G17620.1  protein_id AT5G17620.1p  transcript_id AT5G17620.1  
At5g17630	chr5:005809475	0.0	W/5809475-5810728	AT5G17630.1  CDS  gene_syn K10A8.110, K10A8_110  go_component chloroplast|GO:0009507||IEA  go_process hexose phosphate transport|GO:0015712||ISS  go_function glucose transmembrane transporter activity|GO:0005355||ISS  go_function antiporter activity|GO:0015297||ISS  product glucose-6-phosphate/phosphate translocator, putative  note glucose-6-phosphate/phosphate translocator, putative; FUNCTIONS IN: antiporter activity, glucose transmembrane transporter activity; INVOLVED IN: hexose phosphate transport; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: GPT1; antiporter/ glucose-6-phosphate transmembrane transporter (TAIR:AT5G54800.1); Has 1430 Blast hits to 1429 proteins in 206 species: Archae - 8; Bacteria - 9; Metazoa - 315; Fungi - 208; Plants - 743; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink).  protein_id AT5G17630.1p  transcript_id AT5G17630.1  protein_id AT5G17630.1p  transcript_id AT5G17630.1  
At5g17640	chr5:005811825	0.0	C/5811825-5812429,5811047-5811740	AT5G17640.1  CDS  gene_syn K10A8.120, K10A8_120  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1005 (InterPro:IPR010410); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10020.1); Has 71 Blast hits to 71 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G17640.1p  transcript_id AT5G17640.1  protein_id AT5G17640.1p  transcript_id AT5G17640.1  
At5g17650	chr5:005817475	0.0	C/5817475-5817763,5817000-5817232	AT5G17650.1  CDS  gene_syn K10A8.130, K10A8_130  product glycine/proline-rich protein  note glycine/proline-rich protein; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; Has 8612 Blast hits to 5536 proteins in 501 species: Archae - 4; Bacteria - 1051; Metazoa - 4454; Fungi - 1160; Plants - 1109; Viruses - 38; Other Eukaryotes - 796 (source: NCBI BLink).  protein_id AT5G17650.1p  transcript_id AT5G17650.1  protein_id AT5G17650.1p  transcript_id AT5G17650.1  
At5g17660	chr5:005820545	0.0	C/5820545-5820811,5820273-5820329,5820110-5820185,5819654-5819733,5819482-5819531,5819304-5819388,5819096-5819194,5818778-5819002	AT5G17660.1  CDS  gene_syn MVA3.1, MVA3_1  go_component chloroplast|GO:0009507||IEA  go_process tRNA modification|GO:0006400||IEA  go_function tRNA (guanine-N7-)-methyltransferase activity|GO:0008176||IEA  product tRNA (guanine-N7-)-methyltransferase  note tRNA (guanine-N7-)-methyltransferase; FUNCTIONS IN: tRNA (guanine-N7-)-methyltransferase activity; INVOLVED IN: tRNA modification; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA (guanine-N-7) methyltransferase (InterPro:IPR003358); Has 3208 Blast hits to 3208 proteins in 1181 species: Archae - 0; Bacteria - 2163; Metazoa - 98; Fungi - 73; Plants - 74; Viruses - 0; Other Eukaryotes - 800 (source: NCBI BLink).  protein_id AT5G17660.1p  transcript_id AT5G17660.1  protein_id AT5G17660.1p  transcript_id AT5G17660.1  
At5g17670	chr5:005821082	0.0	W/5821082-5821198,5821424-5821596,5821687-5821739,5821851-5821965,5822058-5822180,5822252-5822600	AT5G17670.1  CDS  gene_syn MVA3.2, MVA3_2  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process GPI anchor metabolic process|GO:0006505||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  product hydrolase, acting on ester bonds  note hydrolase, acting on ester bonds; FUNCTIONS IN: hydrolase activity, acting on ester bonds; INVOLVED IN: intracellular protein transport, GPI anchor metabolic process; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PGAP1-like (InterPro:IPR012908); Has 203 Blast hits to 203 proteins in 79 species: Archae - 0; Bacteria - 148; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT5G17670.1p  transcript_id AT5G17670.1  protein_id AT5G17670.1p  transcript_id AT5G17670.1  
At5g17680	chr5:005822999	0.0	W/5822999-5823468,5823549-5824644,5824743-5825042,5825135-5827153	AT5G17680.1  CDS  gene_syn MVA3.30, MVA3_30  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, protein binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat 3 (InterPro:IPR011713), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G18360.1); Has 46959 Blast hits to 23019 proteins in 847 species: Archae - 26; Bacteria - 3250; Metazoa - 10618; Fungi - 653; Plants - 29869; Viruses - 25; Other Eukaryotes - 2518 (source: NCBI BLink).  protein_id AT5G17680.1p  transcript_id AT5G17680.1  protein_id AT5G17680.1p  transcript_id AT5G17680.1  
At5g17690	chr5:005829178	0.0	C/5829178-5829537,5828839-5828864,5828651-5828737,5827783-5828538,5827640-5827700,5827504-5827551	AT5G17690.1  CDS  gene_syn LHP1, LIKE HETEROCHROMATIN PROTEIN 1, MVA3.4, MVA3_4, TERMINAL FLOWER 2, TFL2  gene TFL2  function Regulates the meristem response to light signals and the maintenance of inflorescence meristem identity. Influences developmental processes controlled by APETALA1. TFL2 silences specific genes within euchromatin but not genes positioned in heterochromatin. TFL2 protein localized preferentially to euchromatic regions and not to heterochromatic chromocenters. Involved in euchromatin organization. Required for epigenetic maintenance of the vernalized state.  go_component euchromatin|GO:0000791|16244868|IDA  go_component nuclear heterochromatin|GO:0005720|16361394|IDA  go_process establishment or maintenance of chromatin architecture|GO:0006325|16244868|IMP  go_process chromatin silencing|GO:0006342|16549797|IMP  go_process chromatin silencing|GO:0006342|17542647|IEP  go_process photoperiodism|GO:0009648|9611176|IMP  go_process multidimensional cell growth|GO:0009825|9611176|IMP  go_process negative regulation of flower development|GO:0009910|9611176|IMP  go_process shoot morphogenesis|GO:0010016|9611176|IMP  go_process vernalization response|GO:0010048|16682972|IMP  go_process maintenance of inflorescence meristem identity|GO:0010077|9611176|IMP  go_process negative regulation of gene expression, epigenetic|GO:0045814|16549797|IMP  go_process root development|GO:0048364|9611176|IMP  go_process photoperiodism, flowering|GO:0048573|18799658|IMP  go_function DNA binding|GO:0003677|16972870|IDA  go_function methylated histone residue binding|GO:0035064|17542647|IDA  product TFL2 (TERMINAL FLOWER 2); DNA binding / methylated histone residue binding  note TERMINAL FLOWER 2 (TFL2); FUNCTIONS IN: methylated histone residue binding, DNA binding; INVOLVED IN: in 11 processes; LOCATED IN: nuclear heterochromatin, euchromatin; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chromo domain subgroup (InterPro:IPR017984), Chromo domain-like (InterPro:IPR016197), Chromo shadow, subgroup (InterPro:IPR018125), Chromo domain (InterPro:IPR000953); Has 5777 Blast hits to 4589 proteins in 331 species: Archae - 4; Bacteria - 203; Metazoa - 2999; Fungi - 823; Plants - 406; Viruses - 207; Other Eukaryotes - 1135 (source: NCBI BLink).  protein_id AT5G17690.1p  transcript_id AT5G17690.1  protein_id AT5G17690.1p  transcript_id AT5G17690.1  
At5g17700	chr5:005833149	0.0	C/5833149-5833415,5832314-5832855,5832091-5832177,5831960-5832016,5831608-5831846,5831385-5831503,5831201-5831287,5831025-5831120	AT5G17700.1  CDS  gene_syn MVA3.5, MVA3_5  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: drug transporter activity, antiporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT3G03620.1); Has 5190 Blast hits to 5101 proteins in 1067 species: Archae - 107; Bacteria - 3403; Metazoa - 117; Fungi - 210; Plants - 710; Viruses - 0; Other Eukaryotes - 643 (source: NCBI BLink).  protein_id AT5G17700.1p  transcript_id AT5G17700.1  protein_id AT5G17700.1p  transcript_id AT5G17700.1  
At5g17710	chr5:005841388	0.0	C/5841388-5841639,5840310-5840825,5839560-5839772	AT5G17710.2  CDS  gene_syn EMB1241, MVA3.60, MVA3_60, embryo defective 1241  gene EMB1241  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_function adenyl-nucleotide exchange factor activity|GO:0000774||IEA  go_function protein binding|GO:0005515||IEA  go_function protein homodimerization activity|GO:0042803||IEA  go_function chaperone binding|GO:0051087||IEA  go_process protein folding|GO:0006457||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product EMB1241 (embryo defective 1241); adenyl-nucleotide exchange factor/ chaperone binding / protein binding / protein homodimerization  note embryo defective 1241 (EMB1241); FUNCTIONS IN: protein binding, adenyl-nucleotide exchange factor activity, chaperone binding, protein homodimerization activity; INVOLVED IN: embryonic development ending in seed dormancy, protein folding; LOCATED IN: thylakoid, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GrpE nucleotide exchange factor (InterPro:IPR000740), GrpE nucleotide exchange factor, coiled-coil (InterPro:IPR013805), GrpE nucleotide exchange factor, head (InterPro:IPR009012); BEST Arabidopsis thaliana protein match is: co-chaperone grpE family protein (TAIR:AT1G36390.2); Has 5868 Blast hits to 5837 proteins in 1527 species: Archae - 92; Bacteria - 2831; Metazoa - 204; Fungi - 113; Plants - 94; Viruses - 7; Other Eukaryotes - 2527 (source: NCBI BLink).  protein_id AT5G17710.2p  transcript_id AT5G17710.2  protein_id AT5G17710.2p  transcript_id AT5G17710.2  
At5g17710	chr5:005841394	0.0	C/5841394-5841639,5840310-5840825,5839560-5839772	AT5G17710.1  CDS  gene_syn EMB1241, MVA3.60, MVA3_60, embryo defective 1241  gene EMB1241  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_function adenyl-nucleotide exchange factor activity|GO:0000774||IEA  go_function protein binding|GO:0005515||IEA  go_function protein homodimerization activity|GO:0042803||IEA  go_function chaperone binding|GO:0051087||IEA  go_process protein folding|GO:0006457||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product EMB1241 (embryo defective 1241); adenyl-nucleotide exchange factor/ chaperone binding / protein binding / protein homodimerization  note embryo defective 1241 (EMB1241); FUNCTIONS IN: protein binding, chaperone binding, protein homodimerization activity, adenyl-nucleotide exchange factor activity; INVOLVED IN: embryonic development ending in seed dormancy, protein folding; LOCATED IN: thylakoid, chloroplast, chloroplast stroma; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GrpE nucleotide exchange factor (InterPro:IPR000740), GrpE nucleotide exchange factor, coiled-coil (InterPro:IPR013805), GrpE nucleotide exchange factor, head (InterPro:IPR009012); BEST Arabidopsis thaliana protein match is: co-chaperone grpE family protein (TAIR:AT1G36390.2); Has 5853 Blast hits to 5816 proteins in 1524 species: Archae - 90; Bacteria - 2831; Metazoa - 174; Fungi - 117; Plants - 92; Viruses - 2; Other Eukaryotes - 2547 (source: NCBI BLink).  protein_id AT5G17710.1p  transcript_id AT5G17710.1  protein_id AT5G17710.1p  transcript_id AT5G17710.1  
At5g17720	chr5:005845934	0.0	W/5845934-5846387,5846466-5846812,5846906-5847102,5847320-5847653	AT5G17720.1  CDS  gene_syn MVA3.7, MVA3_7  go_component endomembrane system|GO:0012505||IEA  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT5G17780.1); Has 2029 Blast hits to 2028 proteins in 450 species: Archae - 1; Bacteria - 933; Metazoa - 162; Fungi - 60; Plants - 81; Viruses - 2; Other Eukaryotes - 790 (source: NCBI BLink).  protein_id AT5G17720.1p  transcript_id AT5G17720.1  protein_id AT5G17720.1p  transcript_id AT5G17720.1  
At5g17725	chr5:005848296	0.0	C/5848296-5850501	AT5G17725.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.9e-07 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)  
At5g17730	chr5:005853028	0.0	C/5853028-5853999,5852498-5852938	AT5G17730.1  CDS  gene_syn MVA3.80, MVA3_80  go_component endomembrane system|GO:0012505||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process biological_process|GO:0008150||ND  go_function ATP binding|GO:0005524||ISS  go_function ATPase activity|GO:0016887||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT5G17740.1); Has 15530 Blast hits to 14367 proteins in 1642 species: Archae - 810; Bacteria - 4278; Metazoa - 3024; Fungi - 1921; Plants - 1370; Viruses - 28; Other Eukaryotes - 4099 (source: NCBI BLink).  protein_id AT5G17730.1p  transcript_id AT5G17730.1  protein_id AT5G17730.1p  transcript_id AT5G17730.1  
At5g17740	chr5:005856948	0.0	C/5856948-5857934,5856235-5856849	AT5G17740.1  CDS  gene_syn MVA3.90, MVA3_90  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ATP binding|GO:0005524||ISS  go_function ATPase activity|GO:0016887||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT5G17730.1); Has 13882 Blast hits to 12791 proteins in 1602 species: Archae - 718; Bacteria - 4020; Metazoa - 2472; Fungi - 1709; Plants - 1273; Viruses - 24; Other Eukaryotes - 3666 (source: NCBI BLink).  protein_id AT5G17740.1p  transcript_id AT5G17740.1  protein_id AT5G17740.1p  transcript_id AT5G17740.1  
At5g17750	chr5:005859882	0.0	C/5859882-5860041,5859048-5859790,5858695-5858970	AT5G17750.1  CDS  gene_syn MVA3.11, MVA3_11  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ATP binding|GO:0005524||ISS  go_function ATPase activity|GO:0016887||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT5G17740.1); Has 12760 Blast hits to 11801 proteins in 1595 species: Archae - 707; Bacteria - 3820; Metazoa - 2171; Fungi - 1597; Plants - 1137; Viruses - 24; Other Eukaryotes - 3304 (source: NCBI BLink).  protein_id AT5G17750.1p  transcript_id AT5G17750.1  protein_id AT5G17750.1p  transcript_id AT5G17750.1  
At5g17760	chr5:005861276	0.0	C/5861276-5862301	AT5G17760.2  CDS  gene_syn MVA3.110, MVA3_110  go_component plasma membrane|GO:0005886|17317660|IDA  go_function ATP binding|GO:0005524||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_function ATP binding|GO:0005524||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: ATP binding; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT5G17740.1); Has 5167 Blast hits to 5032 proteins in 872 species: Archae - 374; Bacteria - 1389; Metazoa - 603; Fungi - 722; Plants - 579; Viruses - 13; Other Eukaryotes - 1487 (source: NCBI BLink).  protein_id AT5G17760.2p  transcript_id AT5G17760.2  protein_id AT5G17760.2p  transcript_id AT5G17760.2  
At5g17760	chr5:005861294	0.0	C/5861294-5862301,5860591-5861100	AT5G17760.1  CDS  gene_syn MVA3.110, MVA3_110  go_component plasma membrane|GO:0005886|17317660|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_function ATP binding|GO:0005524||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT5G17740.1); Has 15144 Blast hits to 13977 proteins in 1632 species: Archae - 773; Bacteria - 4192; Metazoa - 2751; Fungi - 1861; Plants - 1385; Viruses - 31; Other Eukaryotes - 4151 (source: NCBI BLink).  protein_id AT5G17760.1p  transcript_id AT5G17760.1  protein_id AT5G17760.1p  transcript_id AT5G17760.1  
At5g17770	chr5:005866378	0.0	C/5866378-5866495,5866045-5866186,5865753-5865843,5865583-5865660,5865390-5865470,5865217-5865306,5865041-5865106,5864838-5864924,5864543-5864635	AT5G17770.1  CDS  gene_syn ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1, ATCBR, CBR1, NADH:CYTOCHROME B5 REDUCTASE 1  gene ATCBR  function Encodes NADH:cytochrome (Cyt) b5 reductase that displayed strict specificity to NADH for the reduction of a recombinant Cyt b5 (AtB5-A), whereas no Cyt b5 reduction was observed when NADPH was used as the electron donor.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process electron transport chain|GO:0022900|9880378|IDA  go_function cytochrome-b5 reductase activity|GO:0004128|17227547|IDA  go_function cytochrome-b5 reductase activity|GO:0004128|9880378|IDA  product ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1); cytochrome-b5 reductase  note ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1 (ATCBR); FUNCTIONS IN: cytochrome-b5 reductase activity; INVOLVED IN: electron transport chain; LOCATED IN: endoplasmic reticulum, plasma membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase FAD-binding region (InterPro:IPR008333), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), NADH:cytochrome b5 reductase (CBR) (InterPro:IPR001834); BEST Arabidopsis thaliana protein match is: NADH-cytochrome b5 reductase, putative (TAIR:AT5G20080.1); Has 6065 Blast hits to 6063 proteins in 1172 species: Archae - 40; Bacteria - 3732; Metazoa - 451; Fungi - 520; Plants - 317; Viruses - 0; Other Eukaryotes - 1005 (source: NCBI BLink).  protein_id AT5G17770.1p  transcript_id AT5G17770.1  protein_id AT5G17770.1p  transcript_id AT5G17770.1  
At5g17780	chr5:005868559	0.0	C/5868559-5868976,5868116-5868447,5867833-5868020,5867429-5867744	AT5G17780.1  CDS  gene_syn MVA3.14, MVA3_14  go_component endomembrane system|GO:0012505||IEA  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT5G17720.1); Has 5603 Blast hits to 5599 proteins in 827 species: Archae - 18; Bacteria - 2831; Metazoa - 272; Fungi - 168; Plants - 159; Viruses - 2; Other Eukaryotes - 2153 (source: NCBI BLink).  protein_id AT5G17780.1p  transcript_id AT5G17780.1  protein_id AT5G17780.1p  transcript_id AT5G17780.1  
At5g17780	chr5:005868559	0.0	C/5868559-5868976,5868116-5868453,5867833-5868020,5867429-5867744	AT5G17780.2  CDS  gene_syn MVA3.14, MVA3_14  go_component endomembrane system|GO:0012505||IEA  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT5G17720.1); Has 5591 Blast hits to 5587 proteins in 834 species: Archae - 19; Bacteria - 2847; Metazoa - 265; Fungi - 173; Plants - 158; Viruses - 0; Other Eukaryotes - 2129 (source: NCBI BLink).  protein_id AT5G17780.2p  transcript_id AT5G17780.2  protein_id AT5G17780.2p  transcript_id AT5G17780.2  
At5g17790	chr5:005872229	0.0	C/5872229-5872671,5872021-5872147,5871622-5871902,5871236-5871334,5869810-5871136	AT5G17790.1  CDS  gene_syn MVA3.15, MVA3_15, VAR3, VARIEGATED 3  gene VAR3  function Encodes a 85.9 kDa protein containing novel repeats and zinc fingers described as protein interaction domains. VAR3 is a part of a protein complex required for normal chloroplast and palisade cell development. Mutants display a variegated phenotype due to somatic areas lacking or containing developmentally retarded chloroplasts and greatly reduced numbers of palisade cells.  go_function zinc ion binding|GO:0008270||IEA  go_component chloroplast|GO:0009507|15340011|IDA  go_component chloroplast stroma|GO:0009570|15340011|IDA  go_process chloroplast organization|GO:0009658|15340011|IMP  go_function binding|GO:0005488||ISS  product VAR3 (VARIEGATED 3); binding / zinc ion binding  note VARIEGATED 3 (VAR3); FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: chloroplast organization; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: zinc finger (Ran-binding) family protein (TAIR:AT1G55040.1); Has 486 Blast hits to 434 proteins in 99 species: Archae - 0; Bacteria - 2; Metazoa - 170; Fungi - 34; Plants - 150; Viruses - 2; Other Eukaryotes - 128 (source: NCBI BLink).  protein_id AT5G17790.1p  transcript_id AT5G17790.1  protein_id AT5G17790.1p  transcript_id AT5G17790.1  
At5g17795	chr5:005875004	0.0	C/5875004-5875219	AT5G17795.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G17795.1p  transcript_id AT5G17795.1  protein_id AT5G17795.1p  transcript_id AT5G17795.1  
At5g17800	chr5:005877247	0.0	W/5877247-5877628,5877912-5878337,5878908-5879071	AT5G17800.1  CDS  gene_syn AtMYB56, MVA3.150, MVA3_150, myb domain protein 56  gene AtMYB56  function Member of the R2R3 factor gene family.  go_component nucleus|GO:0005634|16581911|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AtMYB56 (myb domain protein 56); DNA binding / transcription factor  note myb domain protein 56 (AtMYB56); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB105 (myb domain protein 105); DNA binding / transcription factor (TAIR:AT1G69560.1); Has 5879 Blast hits to 5397 proteins in 362 species: Archae - 0; Bacteria - 0; Metazoa - 633; Fungi - 328; Plants - 3238; Viruses - 3; Other Eukaryotes - 1677 (source: NCBI BLink).  protein_id AT5G17800.1p  transcript_id AT5G17800.1  protein_id AT5G17800.1p  transcript_id AT5G17800.1  
At5g17810	chr5:005881993	0.0	C/5881993-5882602,5881506-5881684,5880576-5880593	AT5G17810.1  CDS  gene_syn MVA3.17, MVA3_17, WOX12, WUSCHEL related homeobox 12  gene WOX12  function Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product WOX12 (WUSCHEL related homeobox 12); DNA binding / transcription factor  note WUSCHEL related homeobox 12 (WOX12); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WOX11 (WUSCHEL related homeobox 11); DNA binding / transcription factor (TAIR:AT3G03660.1); Has 297 Blast hits to 291 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 296; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G17810.1p  transcript_id AT5G17810.1  protein_id AT5G17810.1p  transcript_id AT5G17810.1  
At5g17820	chr5:005889895	0.0	C/5889895-5890101,5888908-5889356,5888195-5888480	AT5G17820.1  CDS  gene_syn MVA3.170, MVA3_170  go_component cell wall|GO:0005618|14595688|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase 57 (PER57) (P57) (PRXR10)  note peroxidase 57 (PER57) (P57) (PRXR10); FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: cell wall, membrane, plant-type cell wall; EXPRESSED IN: root, leaf; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT3G03670.1); Has 2859 Blast hits to 2843 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 46; Plants - 2774; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT5G17820.1p  transcript_id AT5G17820.1  protein_id AT5G17820.1p  transcript_id AT5G17820.1  
At5g17830	chr5:005893382	0.0	W/5893382-5893447,5893919-5895085,5895176-5895367	AT5G17830.1  CDS  gene_syn MVA3.19, MVA3_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04440.1); Has 161 Blast hits to 161 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 51; Plants - 87; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT5G17830.1p  transcript_id AT5G17830.1  protein_id AT5G17830.1p  transcript_id AT5G17830.1  
At5g17840	chr5:005896918	0.0	C/5896918-5897055,5896024-5896285,5895879-5895943	AT5G17840.1  CDS  gene_syn MVA3.190, MVA3_190  go_component chloroplast|GO:0009507||IEA  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  product chaperone protein dnaJ-related  note chaperone protein dnaJ-related; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, cysteine-rich region (InterPro:IPR001305); Has 67 Blast hits to 67 proteins in 19 species: Archae - 0; Bacteria - 13; Metazoa - 3; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT5G17840.1p  transcript_id AT5G17840.1  protein_id AT5G17840.1p  transcript_id AT5G17840.1  
At5g17847	chr5:005898659	0.0	W/5898659-5898787	AT5G17847.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G17847.1p  transcript_id AT5G17847.1  protein_id AT5G17847.1p  transcript_id AT5G17847.1  
At5g17850	chr5:005899253	0.0	W/5899253-5900932	AT5G17850.1  CDS  gene_syn MVA3.200, MVA3_200  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812||ISS  go_function calcium:sodium antiporter activity|GO:0005432||ISS  go_function cation:cation antiporter activity|GO:0015491|11500563|NAS  go_function cation:cation antiporter activity|GO:0015491||ISS  product cation exchanger, putative (CAX8)  note cation exchanger, putative (CAX8); FUNCTIONS IN: cation:cation antiporter activity, calcium:sodium antiporter activity; INVOLVED IN: cation transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Sodium/calcium exchanger membrane region (InterPro:IPR004837); BEST Arabidopsis thaliana protein match is: CAX7 (calcium exchanger 7); calcium:sodium antiporter/ cation:cation antiporter (TAIR:AT5G17860.1); Has 3317 Blast hits to 2564 proteins in 654 species: Archae - 33; Bacteria - 989; Metazoa - 1403; Fungi - 201; Plants - 95; Viruses - 0; Other Eukaryotes - 596 (source: NCBI BLink).  protein_id AT5G17850.1p  transcript_id AT5G17850.1  protein_id AT5G17850.1p  transcript_id AT5G17850.1  
At5g17860	chr5:005902638	0.0	C/5902638-5904350	AT5G17860.1  CDS  gene_syn CAX7, MPI7.2, calcium exchanger 7  gene CAX7  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812||ISS  go_function calcium:sodium antiporter activity|GO:0005432||ISS  go_function cation:cation antiporter activity|GO:0015491|11500563|NAS  go_function cation:cation antiporter activity|GO:0015491||ISS  product CAX7 (calcium exchanger 7); calcium:sodium antiporter/ cation:cation antiporter  note calcium exchanger 7 (CAX7); FUNCTIONS IN: cation:cation antiporter activity, calcium:sodium antiporter activity; INVOLVED IN: cation transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Sodium/calcium exchanger membrane region (InterPro:IPR004837); BEST Arabidopsis thaliana protein match is: cation exchanger, putative (CAX8) (TAIR:AT5G17850.1); Has 3070 Blast hits to 2202 proteins in 479 species: Archae - 25; Bacteria - 1037; Metazoa - 1080; Fungi - 197; Plants - 106; Viruses - 0; Other Eukaryotes - 625 (source: NCBI BLink).  protein_id AT5G17860.1p  transcript_id AT5G17860.1  protein_id AT5G17860.1p  transcript_id AT5G17860.1  
At5g17870	chr5:005907817	0.0	W/5907817-5908137	AT5G17870.1  CDS  gene_syn MPI7.3, MPI7_3, PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6, PSRP6  gene PSRP6  function plastid-specific ribosomal protein 6 precursor (Psrp-6) - like  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6)  note PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6 (PSRP6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G17870.1p  transcript_id AT5G17870.1  protein_id AT5G17870.1p  transcript_id AT5G17870.1  
At5g17880	chr5:005912615	0.0	C/5912615-5913096,5911365-5912538,5910810-5911124,5909827-5910717,5909072-5909741,5908874-5908935	AT5G17880.1  CDS  gene_syn CSA1, MPI7.20, MPI7_20, constitutive shade-avoidance1  gene CSA1  function Encodes a TIR-NBS-LRR protein CSA1 that functions in photomorphogenic development. csa1 mutants display a constitutive shade-avoidance (CSA) phenotype (long stem) under high red:far-red rations (i.e. in the absence of a shade signal). csa1 mutation can be complemented by RPS4, a TIR-NBS-LRR protein that confers resistance against bacterium Pseudomonas syringae.  go_component intrinsic to membrane|GO:0031224||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  go_process response to light stimulus|GO:0009416|17114357|IMP  go_process response to red light|GO:0010114|17114357|IMP  go_process defense response to bacterium|GO:0042742|17114357|IMP  product CSA1 (constitutive shade-avoidance1); ATP binding / transmembrane receptor  note constitutive shade-avoidance1 (CSA1); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: defense response to bacterium, response to light stimulus, response to red light, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat 3 (InterPro:IPR011713), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT3G51570.1); Has 18512 Blast hits to 12582 proteins in 558 species: Archae - 11; Bacteria - 1289; Metazoa - 2320; Fungi - 134; Plants - 13952; Viruses - 0; Other Eukaryotes - 806 (source: NCBI BLink).  protein_id AT5G17880.1p  transcript_id AT5G17880.1  protein_id AT5G17880.1p  transcript_id AT5G17880.1  
At5g17890	chr5:005917015	0.0	W/5917015-5917430,5917777-5918902,5918993-5919289,5919375-5920145,5920243-5921345,5921435-5921555,5921665-5921745,5921842-5921958,5922044-5922256,5922329-5922400,5922481-5922599,5922674-5922732,5922814-5923160	AT5G17890.1  CDS  gene_syn DA1-RELATED PROTEIN 4, DAR4, MPI7.6, MPI7_6  gene DAR4  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process defense response|GO:0006952||ISS  product DAR4 (DA1-RELATED PROTEIN 4); ATP binding / protein binding / zinc ion binding  note DA1-RELATED PROTEIN 4 (DAR4); FUNCTIONS IN: protein binding, zinc ion binding, ATP binding; INVOLVED IN: defense response, apoptosis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G36140.1); Has 18497 Blast hits to 13598 proteins in 536 species: Archae - 12; Bacteria - 415; Metazoa - 4690; Fungi - 496; Plants - 9367; Viruses - 99; Other Eukaryotes - 3418 (source: NCBI BLink).  protein_id AT5G17890.1p  transcript_id AT5G17890.1  protein_id AT5G17890.1p  transcript_id AT5G17890.1  
At5g17900	chr5:005925144	0.0	W/5925144-5926339,5926579-5926690	AT5G17900.1  CDS  gene_syn MPI7.7, MPI7_7  go_component extracellular region|GO:0005576||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: extracellular region; CONTAINS InterPro DOMAIN/s: Micro-fibrillar-associated 1, C-terminal (InterPro:IPR009730); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08580.1); Has 36643 Blast hits to 21191 proteins in 1090 species: Archae - 183; Bacteria - 2726; Metazoa - 17629; Fungi - 3036; Plants - 994; Viruses - 215; Other Eukaryotes - 11860 (source: NCBI BLink).  protein_id AT5G17900.1p  transcript_id AT5G17900.1  protein_id AT5G17900.1p  transcript_id AT5G17900.1  
At5g17910	chr5:005927906	0.0	W/5927906-5930854,5931213-5932292	AT5G17910.1  CDS  gene_syn MPI7.8, MPI7_8  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29620.1); Has 44105 Blast hits to 19239 proteins in 906 species: Archae - 120; Bacteria - 7658; Metazoa - 18238; Fungi - 4859; Plants - 1612; Viruses - 441; Other Eukaryotes - 11177 (source: NCBI BLink).  protein_id AT5G17910.1p  transcript_id AT5G17910.1  protein_id AT5G17910.1p  transcript_id AT5G17910.1  
At5g17920	chr5:005935771	0.0	W/5935771-5936120,5936210-5936297,5936566-5936693,5936800-5937191,5937293-5937456,5937555-5937635,5937733-5937899,5937994-5938099,5938192-5938442,5938527-5938728,5938827-5939195	AT5G17920.1  CDS  gene_syn ATCIMS, ATMETS, ATMS1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, MPI7.60, MPI7_60  gene ATMS1  function Encodes a cytosolic cobalamin-independent methionine synthase, involved in methionine regeneration via the activated methyl cycle (SAM cycle). The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide.  go_component peroxisome|GO:0005777|17951448|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function copper ion binding|GO:0005507|16526091|IDA  go_component cytosol|GO:0005829|15024005|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component cytosol|GO:0005829||ISS  go_process methionine biosynthetic process|GO:0009086||ISS  go_function 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity|GO:0003871||ISS  go_function methionine synthase activity|GO:0008705|15024005|IDA  product ATMS1; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase/ copper ion binding / methionine synthase  note ATMS1; FUNCTIONS IN: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, copper ion binding, methionine synthase activity; INVOLVED IN: response to cadmium ion, response to salt stress, methionine biosynthetic process; LOCATED IN: in 7 components; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal (InterPro:IPR013215), Methionine synthase, vitamin-B12 independent (InterPro:IPR002629), 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (InterPro:IPR006276); BEST Arabidopsis thaliana protein match is: AtMS2; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase/ methionine synthase (TAIR:AT3G03780.3); Has 2717 Blast hits to 2715 proteins in 934 species: Archae - 113; Bacteria - 1760; Metazoa - 10; Fungi - 147; Plants - 157; Viruses - 2; Other Eukaryotes - 528 (source: NCBI BLink).  protein_id AT5G17920.1p  transcript_id AT5G17920.1  protein_id AT5G17920.1p  transcript_id AT5G17920.1  
At5g17920	chr5:005935771	0.0	W/5935771-5936120,5936210-5936297,5936566-5936693,5936800-5937191,5937293-5937456,5937555-5937635,5937733-5937899,5937994-5938099,5938192-5938442,5938527-5938728,5938827-5939195	AT5G17920.2  CDS  gene_syn ATCIMS, ATMETS, ATMS1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, MPI7.60, MPI7_60  gene ATMS1  function Encodes a cytosolic cobalamin-independent methionine synthase, involved in methionine regeneration via the activated methyl cycle (SAM cycle). The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide.  go_component peroxisome|GO:0005777|17951448|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component cytosol|GO:0005829|15024005|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component cytosol|GO:0005829||ISS  go_process methionine biosynthetic process|GO:0009086||ISS  go_function 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity|GO:0003871||ISS  go_function methionine synthase activity|GO:0008705|15024005|IDA  product ATMS1; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase/ methionine synthase  note COBALAMIN-INDEPENDENT METHIONINE SYNTHASE (ATCIMS); FUNCTIONS IN: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, methionine synthase activity; INVOLVED IN: response to salt stress, methionine biosynthetic process; LOCATED IN: in 6 components; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal (InterPro:IPR013215), Methionine synthase, vitamin-B12 independent (InterPro:IPR002629), 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (InterPro:IPR006276); BEST Arabidopsis thaliana protein match is: AtMS2; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase/ methionine synthase (TAIR:AT3G03780.3); Has 2717 Blast hits to 2715 proteins in 934 species: Archae - 113; Bacteria - 1760; Metazoa - 10; Fungi - 147; Plants - 157; Viruses - 2; Other Eukaryotes - 528 (source: NCBI BLink).  protein_id AT5G17920.2p  transcript_id AT5G17920.2  protein_id AT5G17920.2p  transcript_id AT5G17920.2  
At5g17930	chr5:005943949	0.0	C/5943949-5943952,5943774-5943853,5942849-5943683,5942700-5942767,5942497-5942570,5942267-5942363,5942034-5942119,5941588-5941670,5941364-5941488,5941178-5941279,5940604-5941020,5940131-5940514	AT5G17930.1  CDS  gene_syn MCM23.1, MCM23_1  go_process RNA metabolic process|GO:0016070||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  product binding / protein binding  note binding / protein binding; FUNCTIONS IN: protein binding, binding; INVOLVED IN: RNA metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891), Armadillo-type fold (InterPro:IPR016024), MIF4G-like, type 3 (InterPro:IPR003890); BEST Arabidopsis thaliana protein match is: MIF4G domain-containing protein / MA3 domain-containing protein (TAIR:AT1G80930.1); Has 15196 Blast hits to 10087 proteins in 508 species: Archae - 59; Bacteria - 524; Metazoa - 7218; Fungi - 1256; Plants - 479; Viruses - 77; Other Eukaryotes - 5583 (source: NCBI BLink).  protein_id AT5G17930.1p  transcript_id AT5G17930.1  protein_id AT5G17930.1p  transcript_id AT5G17930.1  
At5g17950	chr5:005944887	0.0	C/5944887-5944959,5944553-5944842	AT5G17950.1  CDS  gene_syn MCM23.2, MCM23_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G17950.1p  transcript_id AT5G17950.1  protein_id AT5G17950.1p  transcript_id AT5G17950.1  
At5g17960	chr5:005945665	0.0	C/5945665-5947464	AT5G17960.1  CDS  gene_syn MCM23.3, MCM23_3  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT2G17600.1); Has 1171 Blast hits to 478 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1160; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G17960.1p  transcript_id AT5G17960.1  protein_id AT5G17960.1p  transcript_id AT5G17960.1  
At5g17970	chr5:005951141	0.0	C/5951141-5951619,5949934-5951053,5949530-5949832,5948999-5949439	AT5G17970.1  CDS  gene_syn MCM23.4, MCM23_4  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G18360.1); Has 10982 Blast hits to 8645 proteins in 327 species: Archae - 2; Bacteria - 251; Metazoa - 156; Fungi - 16; Plants - 10252; Viruses - 2; Other Eukaryotes - 303 (source: NCBI BLink).  protein_id AT5G17970.1p  transcript_id AT5G17970.1  protein_id AT5G17970.1p  transcript_id AT5G17970.1  
At5g17980	chr5:005953596	0.0	W/5953596-5956745	AT5G17980.1  CDS  gene_syn MCM23.5, MCM23_5  go_component plasma membrane|GO:0005886|17317660|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  product C2 domain-containing protein  note C2 domain-containing protein; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal, plant (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT3G03680.1); Has 12638 Blast hits to 7925 proteins in 651 species: Archae - 34; Bacteria - 1663; Metazoa - 5049; Fungi - 1311; Plants - 1196; Viruses - 147; Other Eukaryotes - 3238 (source: NCBI BLink).  protein_id AT5G17980.1p  transcript_id AT5G17980.1  protein_id AT5G17980.1p  transcript_id AT5G17980.1  
At5g17990	chr5:005957330	0.0	W/5957330-5957547,5957658-5957769,5958122-5958265,5958378-5958539,5958654-5958926,5959010-5959100,5959179-5959238,5959328-5959446,5959526-5959681	AT5G17990.1  CDS  gene_syn MCM23.6, MCM23_6, PHOSPHORIBOSYLANTHRANILATE TRANSFERASE, PHOSPHORIBOSYLANTHRANILATE TRANSFERASE 1, TRP1, pat1, tryptophan biosynthesis 1  gene TRP1  function Encodes the tryptophan biosynthetic enzyme phosphoribosylanthranilate transferase (PAT1, called trpD in bacteria). Converts anthranilate and phosphoribosylpyrophosphate into phosphoribosylanthranilate and inorganic pyrophosphate.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast|GO:0009507|9107035|ISS  go_process tryptophan biosynthetic process|GO:0000162|9017401|IMP  go_process tryptophan biosynthetic process|GO:0000162||ISS  go_function anthranilate phosphoribosyltransferase activity|GO:0004048|9017401|TAS  go_function anthranilate phosphoribosyltransferase activity|GO:0004048||ISS  product TRP1 (tryptophan biosynthesis 1); anthranilate phosphoribosyltransferase  note tryptophan biosynthesis 1 (TRP1); FUNCTIONS IN: anthranilate phosphoribosyltransferase activity; INVOLVED IN: tryptophan biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 3, N-terminal (InterPro:IPR017459), Anthranilate phosphoribosyl transferase (InterPro:IPR005940), Glycosyl transferase, family 3 (InterPro:IPR000312); Has 5394 Blast hits to 5394 proteins in 1236 species: Archae - 205; Bacteria - 2594; Metazoa - 13; Fungi - 88; Plants - 30; Viruses - 0; Other Eukaryotes - 2464 (source: NCBI BLink).  protein_id AT5G17990.1p  transcript_id AT5G17990.1  protein_id AT5G17990.1p  transcript_id AT5G17990.1  
At5g18000	chr5:005961372	0.0	C/5961372-5961473,5960797-5961085,5960398-5960693,5960071-5960307	AT5G18000.1  CDS  gene_syn MCM23.7, MCM23_7  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcriptional factor B3 family protein  note transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT5G18090.1); Has 261 Blast hits to 236 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 4; Plants - 238; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G18000.1p  transcript_id AT5G18000.1  protein_id AT5G18000.1p  transcript_id AT5G18000.1  
At5g18005	chr5:005962698	0.0	C/5962698-5962769	AT5G18005.1  tRNA  gene_syn 67643.TRNA-TRP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Trp (anticodon: CCA)  transcript_id AT5G18005.1  
At5g18010	chr5:005963033	0.0	C/5963033-5963305	AT5G18010.1  CDS  gene_syn MCM23.9, MCM23_9  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive protein, putative  note auxin-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT5G18080.1); Has 636 Blast hits to 629 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 635; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G18010.1p  transcript_id AT5G18010.1  protein_id AT5G18010.1p  transcript_id AT5G18010.1  
At5g18015	chr5:005965971	0.0	C/5965971-5966042	AT5G18015.1  tRNA  gene_syn 67643.TRNA-TRP-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Trp (anticodon: CCA)  transcript_id AT5G18015.1  
At5g18020	chr5:005966305	0.0	C/5966305-5966580	AT5G18020.1  CDS  gene_syn MCM23.11, MCM23_11  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive protein, putative  note auxin-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT5G18080.1); Has 651 Blast hits to 643 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 650; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G18020.1p  transcript_id AT5G18020.1  protein_id AT5G18020.1p  transcript_id AT5G18020.1  
At5g18030	chr5:005968527	0.0	W/5968527-5968793	AT5G18030.1  CDS  gene_syn MCM23.13, MCM23_13  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive protein, putative  note auxin-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT5G18010.1); Has 642 Blast hits to 634 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 641; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G18030.1p  transcript_id AT5G18030.1  protein_id AT5G18030.1p  transcript_id AT5G18030.1  
At5g18037	chr5:005971313	0.0	C/5971313-5971528	AT5G18037.1  CDS  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac088 (Arabidopsis NAC domain containing protein 88); transcription factor (TAIR:AT5G18300.1); Has 5 Blast hits to 5 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G18037.1p  transcript_id AT5G18037.1  protein_id AT5G18037.1p  transcript_id AT5G18037.1  
At5g18040	chr5:005972956	0.0	W/5972956-5973052,5973222-5973622,5973715-5973975	AT5G18040.1  CDS  gene_syn MCM23.14, MCM23_14  go_component cellular_component|GO:0005575||ND  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18065.1); Has 34 Blast hits to 34 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G18040.1p  transcript_id AT5G18040.1  protein_id AT5G18040.1p  transcript_id AT5G18040.1  
At5g18050	chr5:005974691	0.0	C/5974691-5974963	AT5G18050.1  CDS  gene_syn MCM23.15, MCM23_15  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive protein, putative  note auxin-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT5G18080.1); Has 626 Blast hits to 619 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 625; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G18050.1p  transcript_id AT5G18050.1  protein_id AT5G18050.1p  transcript_id AT5G18050.1  
At5g18060	chr5:005976030	0.0	W/5976030-5976302	AT5G18060.1  CDS  gene_syn MCM23.16, MCM23_16  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive protein, putative  note auxin-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT5G18050.1); Has 619 Blast hits to 613 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 618; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G18060.1p  transcript_id AT5G18060.1  protein_id AT5G18060.1p  transcript_id AT5G18060.1  
At5g18065	chr5:005979268	0.0	W/5979268-5979364,5979541-5979761,5979846-5980025,5980116-5980376	AT5G18065.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29760.1); Has 28 Blast hits to 28 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G18065.1p  transcript_id AT5G18065.1  protein_id AT5G18065.1p  transcript_id AT5G18065.1  
At5g18070	chr5:005981117	0.0	W/5981117-5982787	AT5G18070.1  CDS  gene_syn DNA-DAMAGE-REPAIR/TOLERATION 101, DRT101  gene DRT101  function encodes a novel protein involved in DNA repair from UV damage. Isolated by functional complementation of E. coli UV-sensitive mutants (UVR genes).  go_function magnesium ion binding|GO:0000287||IEA  go_function intramolecular transferase activity, phosphotransferases|GO:0016868||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process photoreactive repair|GO:0000719|8329681|IGI  go_process response to UV|GO:0009411|8329681|IGI  product DRT101 (DNA-DAMAGE-REPAIR/TOLERATION 101); intramolecular transferase, phosphotransferases / magnesium ion binding  note DNA-DAMAGE-REPAIR/TOLERATION 101 (DRT101); FUNCTIONS IN: intramolecular transferase activity, phosphotransferases, magnesium ion binding; INVOLVED IN: response to UV, photoreactive repair; LOCATED IN: cytosol, mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-D-phosphohexomutase, C-terminal (InterPro:IPR005843), Alpha-D-phosphohexomutase, conserved site (InterPro:IPR016066), Phosphoacetylglucosamine mutase (InterPro:IPR016657), Alpha-D-phosphohexomutase, alpha/beta/alpha I, II and III (InterPro:IPR016055), Alpha-D-phosphohexomutase, alpha/beta/alpha domain I (InterPro:IPR005844); Has 4233 Blast hits to 3999 proteins in 1221 species: Archae - 80; Bacteria - 2441; Metazoa - 149; Fungi - 101; Plants - 23; Viruses - 0; Other Eukaryotes - 1439 (source: NCBI BLink).  protein_id AT5G18070.1p  transcript_id AT5G18070.1  protein_id AT5G18070.1p  transcript_id AT5G18070.1  
At5g18080	chr5:005983840	0.0	W/5983840-5984112	AT5G18080.1  CDS  gene_syn MRG7.3, MRG7_3  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive protein, putative  note auxin-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT5G18020.1); Has 637 Blast hits to 631 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 636; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G18080.1p  transcript_id AT5G18080.1  protein_id AT5G18080.1p  transcript_id AT5G18080.1  
At5g18085	chr5:005984377	0.0	W/5984377-5984448	AT5G18085.1  tRNA  gene_syn 67643.TRNA-TRP-3, 67644.TRNA-TRP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Trp (anticodon: CCA)  transcript_id AT5G18085.1  
At5g18090	chr5:005985467	0.0	W/5985467-5985562,5985928-5986222,5986327-5986607,5986692-5986925	AT5G18090.1  CDS  gene_syn MRG7.5, MRG7_5  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcriptional factor B3 family protein  note transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT5G18000.1); Has 144 Blast hits to 134 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G18090.1p  transcript_id AT5G18090.1  protein_id AT5G18090.1p  transcript_id AT5G18090.1  
At5g18100	chr5:005987221	0.0	W/5987221-5987314,5987410-5987511,5987871-5987966,5988054-5988085,5988222-5988297,5988423-5988436	AT5G18100.2  CDS  gene_syn COPPER/ZINC SUPEROXIDE DISMUTASE, CSD3, MRG7.6, MRG7_6, copper/zinc superoxide dismutase 3  gene CSD3  function A putative peroxisomal CuZnSOD inducible by a high-light pulse.  go_component peroxisome|GO:0005777|17951448|IDA  go_component peroxisome|GO:0005777|9765550|NAS  go_process oxygen and reactive oxygen species metabolic process|GO:0006800|9765550|TAS  go_process response to oxidative stress|GO:0006979|9765550|IEP  go_process response to oxidative stress|GO:0006979|9765550|TAS  go_process removal of superoxide radicals|GO:0019430|9765550|IC  go_function superoxide dismutase activity|GO:0004784|9765550|ISS  product CSD3 (copper/zinc superoxide dismutase 3); superoxide dismutase  note copper/zinc superoxide dismutase 3 (CSD3); FUNCTIONS IN: superoxide dismutase activity; INVOLVED IN: oxygen and reactive oxygen species metabolic process, response to oxidative stress, removal of superoxide radicals; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Superoxide dismutase, copper/zinc binding (InterPro:IPR001424); BEST Arabidopsis thaliana protein match is: CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1); superoxide dismutase (TAIR:AT1G08830.2); Has 2928 Blast hits to 2920 proteins in 829 species: Archae - 6; Bacteria - 786; Metazoa - 960; Fungi - 205; Plants - 551; Viruses - 128; Other Eukaryotes - 292 (source: NCBI BLink).  protein_id AT5G18100.2p  transcript_id AT5G18100.2  protein_id AT5G18100.2p  transcript_id AT5G18100.2  
At5g18100	chr5:005987221	0.0	W/5987221-5987314,5987410-5987511,5987871-5987966,5988054-5988085,5988222-5988297,5988505-5988558,5988666-5988706	AT5G18100.1  CDS  gene_syn COPPER/ZINC SUPEROXIDE DISMUTASE, CSD3, MRG7.6, MRG7_6, copper/zinc superoxide dismutase 3  gene CSD3  function A putative peroxisomal CuZnSOD inducible by a high-light pulse.  go_component vacuole|GO:0005773|15539469|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component peroxisome|GO:0005777|9765550|NAS  go_process oxygen and reactive oxygen species metabolic process|GO:0006800|9765550|TAS  go_process response to oxidative stress|GO:0006979|9765550|IEP  go_process response to oxidative stress|GO:0006979|9765550|TAS  go_process removal of superoxide radicals|GO:0019430|9765550|IC  go_function superoxide dismutase activity|GO:0004784|9765550|ISS  product CSD3 (copper/zinc superoxide dismutase 3); superoxide dismutase  note copper/zinc superoxide dismutase 3 (CSD3); FUNCTIONS IN: superoxide dismutase activity; INVOLVED IN: oxygen and reactive oxygen species metabolic process, response to oxidative stress, removal of superoxide radicals; LOCATED IN: peroxisome, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Superoxide dismutase, copper/zinc, binding site (InterPro:IPR018152), Superoxide dismutase, copper/zinc binding (InterPro:IPR001424); BEST Arabidopsis thaliana protein match is: CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1); superoxide dismutase (TAIR:AT1G08830.2); Has 3364 Blast hits to 3356 proteins in 1008 species: Archae - 6; Bacteria - 1181; Metazoa - 964; Fungi - 205; Plants - 546; Viruses - 148; Other Eukaryotes - 314 (source: NCBI BLink).  protein_id AT5G18100.1p  transcript_id AT5G18100.1  protein_id AT5G18100.1p  transcript_id AT5G18100.1  
At5g18110	chr5:005990451	0.0	C/5990451-5990588,5990018-5990110,5989823-5989927,5989600-5989677,5989322-5989441,5989105-5989236	AT5G18110.1  CDS  gene_syn MRG7.7, MRG7_7, NCBP, NOVEL CAP-BINDING PROTEIN  gene NCBP  go_component cytoplasm|GO:0005737||IEA  go_process translational initiation|GO:0006413||IEA  go_component cytoplasm|GO:0005737||ISS  go_process translational initiation|GO:0006413||ISS  go_function RNA binding|GO:0003723||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product NCBP (NOVEL CAP-BINDING PROTEIN); RNA binding / translation initiation factor  note NOVEL CAP-BINDING PROTEIN (NCBP); FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Eukaryotic translation initiation factor 4E (eIF-4E) (InterPro:IPR001040); BEST Arabidopsis thaliana protein match is: EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E); RNA binding / RNA cap binding / protein binding / translation initiation factor (TAIR:AT4G18040.1); Has 1298 Blast hits to 1298 proteins in 204 species: Archae - 0; Bacteria - 0; Metazoa - 608; Fungi - 226; Plants - 212; Viruses - 0; Other Eukaryotes - 252 (source: NCBI BLink).  protein_id AT5G18110.1p  transcript_id AT5G18110.1  protein_id AT5G18110.1p  transcript_id AT5G18110.1  
At5g18120	chr5:005991385	0.0	W/5991385-5991546,5992346-5992527,5993022-5993146,5993296-5993696	AT5G18120.1  CDS  gene_syn APR-like 7, ATAPRL7, MRG7.8, MRG7_8  gene ATAPRL7  function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5 -phosphosulfate reductase-like (APRL) group.  go_component endomembrane system|GO:0012505||IEA  product ATAPRL7 (APR-like 7)  note APR-like 7 (ATAPRL7); LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATAPRL5 (APR-like 5) (TAIR:AT3G03860.1); Has 134 Blast hits to 134 proteins in 31 species: Archae - 0; Bacteria - 4; Metazoa - 52; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G18120.1p  transcript_id AT5G18120.1  protein_id AT5G18120.1p  transcript_id AT5G18120.1  
At5g18130	chr5:005995634	0.0	W/5995634-5996359,5997049-5997165	AT5G18130.1  CDS  gene_syn MRG7.9, MRG7_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03870.2); Has 26 Blast hits to 26 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G18130.1p  transcript_id AT5G18130.1  protein_id AT5G18130.1p  transcript_id AT5G18130.1  
At5g18130	chr5:005995634	0.0	W/5995634-5996389	AT5G18130.2  CDS  gene_syn MRG7.9, MRG7_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03870.1); Has 25 Blast hits to 25 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G18130.2p  transcript_id AT5G18130.2  protein_id AT5G18130.2p  transcript_id AT5G18130.2  
At5g18140	chr5:005998235	0.0	W/5998235-5998543,5998889-5998957,5999076-5999699	AT5G18140.1  CDS  gene_syn MRG7.10, MRG7_10  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT2G22360.1); Has 15420 Blast hits to 15415 proteins in 1898 species: Archae - 116; Bacteria - 5110; Metazoa - 3216; Fungi - 1289; Plants - 1204; Viruses - 8; Other Eukaryotes - 4477 (source: NCBI BLink).  protein_id AT5G18140.1p  transcript_id AT5G18140.1  protein_id AT5G18140.1p  transcript_id AT5G18140.1  
At5g18150	chr5:006000194	0.0	C/6000194-6000331,6000014-6000106	AT5G18150.1  CDS  gene_syn MRG7.11, MRG7_11  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G14602.1); Has 25 Blast hits to 25 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G18150.1p  transcript_id AT5G18150.1  protein_id AT5G18150.1p  transcript_id AT5G18150.1  
At5g18160	chr5:006002770	0.0	W/6002770-6003909	AT5G18160.1  CDS  gene_syn MRG7.12, MRG7_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G09190.1); Has 954 Blast hits to 936 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 954; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G18160.1p  transcript_id AT5G18160.1  protein_id AT5G18160.1p  transcript_id AT5G18160.1  
At5g18170	chr5:006006172	0.0	W/6006172-6006279,6006518-6006631,6006741-6006962,6007053-6007127,6007208-6007324,6007401-6007651,6007733-6007808,6007882-6007968,6008063-6008248	AT5G18170.1  CDS  gene_syn GDH1, GLUTAMATE DECARBOXYLASE 1, GLUTAMATE DEHYDROGENASE 1, MRG7.13, MRG7_13  gene GDH1  function Encodes the 43 kDa alpha-subunit of the glutamate dehydrogenase with a putative mitochondrial transit polypeptide and NAD(H)- and alpha-ketoglutarate-binding domains. Mitochondrial localization confirmed by subcellular fractionation. Combines in several ratios with GDH2 protein (GDH-beta) to form seven isoenzymes. Catalyzes the cleavage of glycine residues. May be involved in ammonia assimilation under conditions of inorganic nitrogen excess. The enzyme is almost exclusively found in the mitochondria of stem and leaf companion cells.  go_component mitochondrion|GO:0005739|17137349|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|11743114|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|9112779|IDA  go_process nitrogen compound metabolic process|GO:0006807|8643469|IMP  go_process response to absence of light|GO:0009646|8643469|IEP  go_function glutamate dehydrogenase [NAD(P)+] activity|GO:0004353|8643469|IMP  go_function glutamate dehydrogenase [NAD(P)+] activity|GO:0004353|9112779|IDA  go_function oxidoreductase activity|GO:0016491||ISS  product GDH1 (GLUTAMATE DEHYDROGENASE 1); ATP binding / glutamate dehydrogenase [NAD(P)+]/ oxidoreductase  note GLUTAMATE DEHYDROGENASE 1 (GDH1); FUNCTIONS IN: oxidoreductase activity, glutamate dehydrogenase [NAD(P)+] activity, ATP binding; INVOLVED IN: response to cadmium ion, response to salt stress, nitrogen compound metabolic process, response to absence of light; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamate/phenylalanine/leucine/valine dehydrogenase (InterPro:IPR006095), Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal (InterPro:IPR006096), Glutamate dehydrogenase (InterPro:IPR014362), NAD(P)-binding (InterPro:IPR016040), Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation region (InterPro:IPR006097); BEST Arabidopsis thaliana protein match is: GDH3 (GLUTAMATE DEHYDROGENASE 3); binding / catalytic/ oxidoreductase/ oxidoreductase, acting on the CH-NH2 group of donors, NAD or NADP as acceptor (TAIR:AT3G03910.1); Has 5758 Blast hits to 5752 proteins in 1253 species: Archae - 185; Bacteria - 2755; Metazoa - 312; Fungi - 150; Plants - 250; Viruses - 0; Other Eukaryotes - 2106 (source: NCBI BLink).  protein_id AT5G18170.1p  transcript_id AT5G18170.1  protein_id AT5G18170.1p  transcript_id AT5G18170.1  
At5g18180	chr5:006009467	0.0	C/6009467-6009605,6009049-6009197,6008846-6008961,6008561-6008726	AT5G18180.1  CDS  gene_syn MRG7.14, MRG7_14  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process rRNA processing|GO:0006364||IEA  go_function rRNA binding|GO:0019843||IEA  go_function RNA binding|GO:0003723||ISS  product Gar1 RNA-binding region family protein  note Gar1 RNA-binding region family protein; FUNCTIONS IN: RNA binding, rRNA binding; INVOLVED IN: rRNA processing; LOCATED IN: chloroplast thylakoid membrane, membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Gar1 protein RNA-binding region (InterPro:IPR007504); BEST Arabidopsis thaliana protein match is: Gar1 RNA-binding region family protein (TAIR:AT3G03920.1); Has 1147 Blast hits to 1029 proteins in 161 species: Archae - 0; Bacteria - 20; Metazoa - 612; Fungi - 279; Plants - 87; Viruses - 16; Other Eukaryotes - 133 (source: NCBI BLink).  protein_id AT5G18180.1p  transcript_id AT5G18180.1  protein_id AT5G18180.1p  transcript_id AT5G18180.1  
At5g18190	chr5:006013362	0.0	C/6013362-6013724,6013149-6013274,6012986-6013059,6012819-6012888,6012675-6012730,6012523-6012594,6012301-6012395,6012113-6012179,6011906-6012035,6011584-6011802,6011362-6011492,6011099-6011273,6010937-6011027,6010645-6010802,6010366-6010554,6010215-6010274	AT5G18190.1  CDS  gene_syn MRG7.15, MRG7_15  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G03940.1); Has 11988 Blast hits to 11941 proteins in 811 species: Archae - 8; Bacteria - 3130; Metazoa - 4281; Fungi - 925; Plants - 1146; Viruses - 210; Other Eukaryotes - 2288 (source: NCBI BLink).  protein_id AT5G18190.1p  transcript_id AT5G18190.1  protein_id AT5G18190.1p  transcript_id AT5G18190.1  
At5g18190	chr5:006013362	0.0	C/6013362-6013724,6013149-6013274,6012986-6013059,6012819-6012888,6012675-6012730,6012523-6012594,6012301-6012395,6012113-6012179,6011906-6012035,6011584-6011802,6011362-6011492,6011099-6011273,6010937-6011027,6010645-6010802,6010366-6010554,6010215-6010274	AT5G18190.2  CDS  gene_syn MRG7.15, MRG7_15  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G03940.1); Has 11988 Blast hits to 11941 proteins in 811 species: Archae - 8; Bacteria - 3130; Metazoa - 4281; Fungi - 925; Plants - 1146; Viruses - 210; Other Eukaryotes - 2288 (source: NCBI BLink).  protein_id AT5G18190.2p  transcript_id AT5G18190.2  protein_id AT5G18190.2p  transcript_id AT5G18190.2  
At5g18200	chr5:006015270	0.0	W/6015270-6015776,6015925-6016215,6016298-6016555	AT5G18200.1  CDS  gene_syn MRG7.16, MRG7_16  function encodes an adenylyltransferase  go_component cellular_component|GO:0005575||ND  go_process carbohydrate metabolic process|GO:0005975|16519510|TAS  go_process positive regulation of cellular response to phosphate starvation|GO:0080040|16519510|IDA  go_function UTP:galactose-1-phosphate uridylyltransferase activity|GO:0017103|16519510|IDA  go_function ribose-5-phosphate adenylyltransferase activity|GO:0047345|16519510|NAS  product UTP:galactose-1-phosphate uridylyltransferase/ ribose-5-phosphate adenylyltransferase  note UTP:galactose-1-phosphate uridylyltransferase/ ribose-5-phosphate adenylyltransferase; FUNCTIONS IN: UTP:galactose-1-phosphate uridylyltransferase activity, ribose-5-phosphate adenylyltransferase activity; INVOLVED IN: positive regulation of cellular response to phosphate starvation, carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Histidine triad-like motif (InterPro:IPR011146), Galactose-1-phosphate uridyl transferase, class I (InterPro:IPR001937), Histidine triad motif (InterPro:IPR011151); Has 1380 Blast hits to 1379 proteins in 503 species: Archae - 41; Bacteria - 790; Metazoa - 105; Fungi - 96; Plants - 27; Viruses - 0; Other Eukaryotes - 321 (source: NCBI BLink).  protein_id AT5G18200.1p  transcript_id AT5G18200.1  protein_id AT5G18200.1p  transcript_id AT5G18200.1  
At5g18202	chr5:006017006	0.0	W/6017006-6017378	AT5G18202.1  pseudogenic_transcript  pseudo  function unknown pseudogene  
At5g18210	chr5:006017865	0.0	W/6017865-6018238,6018324-6018682,6018819-6018919	AT5G18210.1  CDS  gene_syn MRG7.17, MRG7_17  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT3G03980.1); Has 83372 Blast hits to 83210 proteins in 2231 species: Archae - 465; Bacteria - 46374; Metazoa - 5545; Fungi - 4482; Plants - 1615; Viruses - 2; Other Eukaryotes - 24889 (source: NCBI BLink).  protein_id AT5G18210.1p  transcript_id AT5G18210.1  protein_id AT5G18210.1p  transcript_id AT5G18210.1  
At5g18220	chr5:006020110	0.0	C/6020110-6020453,6018914-6020036	AT5G18220.1  CDS  gene_syn MRG7.18, MRG7_18  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to membrane; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT3G04010.1); Has 1652 Blast hits to 1605 proteins in 129 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 39; Plants - 1608; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G18220.1p  transcript_id AT5G18220.1  protein_id AT5G18220.1p  transcript_id AT5G18220.1  
At5g18230	chr5:006026939	0.0	C/6026939-6027031,6026378-6026509,6025866-6026003,6025572-6025622,6025304-6025393,6025063-6025209,6024847-6024951,6024616-6024669,6023896-6024546,6023409-6023570,6023181-6023316,6022794-6022915,6022253-6022516,6022047-6022181,6021766-6021950,6021610-6021676	AT5G18230.1  CDS  gene_syn MRG7.19, MRG7_19  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription regulator activity|GO:0030528||IEA  go_process negative regulation of transcription|GO:0016481||ISS  go_function transcription regulator activity|GO:0030528||ISS  product transcription regulator NOT2/NOT3/NOT5 family protein  note transcription regulator NOT2/NOT3/NOT5 family protein; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: negative regulation of transcription, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NOT2/NOT3/NOT5 (InterPro:IPR007282), CCR4-NOT complex, subunits 3 and 5 (InterPro:IPR012270), Not CCR4-Not complex component, N-terminal (InterPro:IPR007207); BEST Arabidopsis thaliana protein match is: transcription regulator (TAIR:AT1G07705.2); Has 3755 Blast hits to 2645 proteins in 322 species: Archae - 7; Bacteria - 361; Metazoa - 1264; Fungi - 733; Plants - 176; Viruses - 11; Other Eukaryotes - 1203 (source: NCBI BLink).  protein_id AT5G18230.1p  transcript_id AT5G18230.1  protein_id AT5G18230.1p  transcript_id AT5G18230.1  
At5g18230	chr5:006026939	0.0	C/6026939-6027031,6026595-6026600,6026378-6026509,6025866-6026003,6025572-6025622,6025304-6025393,6025063-6025209,6024847-6024951,6024616-6024669,6023896-6024546,6023409-6023570,6023181-6023316,6022794-6022915,6022253-6022516,6022047-6022181,6021766-6021950,6021610-6021676	AT5G18230.2  CDS  gene_syn MRG7.19, MRG7_19  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription regulator activity|GO:0030528||IEA  go_process negative regulation of transcription|GO:0016481||ISS  go_function transcription regulator activity|GO:0030528||ISS  product transcription regulator NOT2/NOT3/NOT5 family protein  note transcription regulator NOT2/NOT3/NOT5 family protein; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: negative regulation of transcription, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NOT2/NOT3/NOT5 (InterPro:IPR007282), CCR4-NOT complex, subunits 3 and 5 (InterPro:IPR012270), Not CCR4-Not complex component, N-terminal (InterPro:IPR007207); BEST Arabidopsis thaliana protein match is: transcription regulator (TAIR:AT1G07705.2).  protein_id AT5G18230.2p  transcript_id AT5G18230.2  protein_id AT5G18230.2p  transcript_id AT5G18230.2  
At5g18245	chr5:006028285	0.0	W/6028285-6033231	AT5G18245.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT5G18240  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G18245.1  
At5g18240	chr5:006030366	0.0	C/6030366-6030573,6030201-6030277,6029958-6030015,6029767-6029851,6029623-6029692,6028617-6029309	AT5G18240.2  CDS  gene_syn MRG7.20, MRG7_20, MYR1, MYb-related protein 1  gene MYR1  function Encodes MYR1 (MYR1).  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYR1 (MYb-related protein 1); transcription factor  note MYb-related protein 1 (MYR1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT3G04030.1); Has 914 Blast hits to 910 proteins in 43 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 897; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT5G18240.2p  transcript_id AT5G18240.2  protein_id AT5G18240.2p  transcript_id AT5G18240.2  
At5g18240	chr5:006030366	0.0	C/6030366-6030573,6030201-6030277,6029958-6030015,6029767-6029851,6029623-6029692,6028617-6029309	AT5G18240.3  CDS  gene_syn MRG7.20, MRG7_20, MYR1, MYb-related protein 1  gene MYR1  function Encodes MYR1 (MYR1).  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYR1 (MYb-related protein 1); transcription factor  note MYb-related protein 1 (MYR1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT3G04030.1); Has 914 Blast hits to 910 proteins in 43 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 897; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT5G18240.3p  transcript_id AT5G18240.3  protein_id AT5G18240.3p  transcript_id AT5G18240.3  
At5g18240	chr5:006030366	0.0	C/6030366-6030573,6030201-6030277,6029958-6030015,6029767-6029851,6029623-6029692,6028617-6029321	AT5G18240.5  CDS  gene_syn MRG7.20, MRG7_20, MYR1, MYb-related protein 1  gene MYR1  function Encodes MYR1 (MYR1).  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYR1 (MYb-related protein 1); transcription factor  note MYb-related protein 1 (MYR1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT3G04030.3); Has 924 Blast hits to 914 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 903; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT5G18240.5p  transcript_id AT5G18240.5  protein_id AT5G18240.5p  transcript_id AT5G18240.5  
At5g18240	chr5:006030366	0.0	C/6030366-6030573,6030201-6030277,6029958-6030015,6029767-6029851,6029623-6029692,6028617-6029327	AT5G18240.1  CDS  gene_syn MRG7.20, MRG7_20, MYR1, MYb-related protein 1  gene MYR1  function Encodes MYR1 (MYR1).  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYR1 (MYb-related protein 1); transcription factor  note MYb-related protein 1 (MYR1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT3G04030.3); Has 923 Blast hits to 913 proteins in 42 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 908; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT5G18240.1p  transcript_id AT5G18240.1  protein_id AT5G18240.1p  transcript_id AT5G18240.1  
At5g18240	chr5:006030366	0.0	C/6030366-6030573,6030201-6030277,6029958-6030015,6029767-6029851,6029623-6029692,6028617-6029327	AT5G18240.4  CDS  gene_syn MRG7.20, MRG7_20, MYR1, MYb-related protein 1  gene MYR1  function Encodes MYR1 (MYR1).  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYR1 (MYb-related protein 1); transcription factor  note MYb-related protein 1 (MYR1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT3G04030.3); Has 923 Blast hits to 913 proteins in 42 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 908; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT5G18240.4p  transcript_id AT5G18240.4  protein_id AT5G18240.4p  transcript_id AT5G18240.4  
At5g18250	chr5:006033797	0.0	W/6033797-6033865,6033978-6034028,6034256-6034307,6034709-6034767,6034924-6034969,6035092-6035216	AT5G18250.1  CDS  gene_syn MRG7.21, MRG7_21  go_component mitochondrion|GO:0005739|15276431|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04040.1); Has 32 Blast hits to 32 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G18250.1p  transcript_id AT5G18250.1  protein_id AT5G18250.1p  transcript_id AT5G18250.1  
At5g18255	chr5:006035611	0.0	W/6035611-6037601	AT5G18255.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT5G18260  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G18255.2  
At5g18255	chr5:006035624	0.0	W/6035624-6037603	AT5G18255.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT5G18260  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G18255.1  
At5g18255	chr5:006035630	0.0	W/6035630-6037633	AT5G18255.3  ncRNA  function Potential natural antisense gene, locus overlaps with AT5G18260  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G18255.3  
At5g18260	chr5:006037101	0.0	C/6037101-6037295,6036226-6036993	AT5G18260.1  CDS  gene_syn MRG7.22, MRG7_22  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G14180.2); Has 168 Blast hits to 131 proteins in 29 species: Archae - 0; Bacteria - 4; Metazoa - 60; Fungi - 7; Plants - 87; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G18260.1p  transcript_id AT5G18260.1  protein_id AT5G18260.1p  transcript_id AT5G18260.1  
At5g18270	chr5:006042538	0.0	C/6042538-6042743,6042022-6042298,6041241-6041765	AT5G18270.2  CDS  gene_syn ANAC087, MRG7.23, MRG7_23  gene ANAC087  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ANAC087; transcription factor  note ANAC087; FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac046 (Arabidopsis NAC domain containing protein 46); transcription factor (TAIR:AT3G04060.1); Has 1640 Blast hits to 1638 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1640; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G18270.2p  transcript_id AT5G18270.2  protein_id AT5G18270.2p  transcript_id AT5G18270.2  
At5g18270	chr5:006042542	0.0	C/6042542-6042743,6042022-6042302,6041241-6041765	AT5G18270.1  CDS  gene_syn ANAC087, MRG7.23, MRG7_23  gene ANAC087  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ANAC087; transcription factor  note ANAC087; FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac046 (Arabidopsis NAC domain containing protein 46); transcription factor (TAIR:AT3G04060.1); Has 1640 Blast hits to 1638 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1640; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G18270.1p  transcript_id AT5G18270.1  protein_id AT5G18270.1p  transcript_id AT5G18270.1  
At5g18280	chr5:006054873	0.0	C/6054873-6054875,6053703-6054338,6052911-6053039,6052747-6052803,6052573-6052665,6052085-6052290,6051815-6051906,6051412-6051629,6051128-6051317,6050799-6050911	AT5G18280.1  CDS  gene_syn APY2, APYRASE, APYRASE 2, ARABIDOPSIS THALIANA APYRASE 2, ATAPY2, MRG7.24, MRG7_24  gene ATAPY2  function Encodes an enzyme with ATPase and ADPase activity (an apyrase) that when mutated in combination with ATAPY1 causes a complete inhibition of pollen germination.  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process pollen germination|GO:0009846|12692323|IGI  go_function nucleotide diphosphatase activity|GO:0004551||IDA  go_function ATPase activity|GO:0016887||IDA  product ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2); ATPase/ nucleotide diphosphatase  note ARABIDOPSIS THALIANA APYRASE 2 (ATAPY2); FUNCTIONS IN: nucleotide diphosphatase activity, ATPase activity; INVOLVED IN: pollen germination; LOCATED IN: Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407); BEST Arabidopsis thaliana protein match is: ATAPY1 (APYRASE 1); ATPase/ calmodulin binding / nucleotide diphosphatase (TAIR:AT3G04080.1); Has 1076 Blast hits to 1071 proteins in 165 species: Archae - 0; Bacteria - 20; Metazoa - 522; Fungi - 210; Plants - 220; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT5G18280.1p  transcript_id AT5G18280.1  protein_id AT5G18280.1p  transcript_id AT5G18280.1  
At5g18280	chr5:006054873	0.0	C/6054873-6054875,6053703-6054338,6053453-6053508,6053200-6053299,6052911-6053039,6052747-6052803,6052573-6052665,6052085-6052290,6051815-6051906,6051412-6051629,6051128-6051317,6050799-6050911	AT5G18280.2  CDS  gene_syn APY2, APYRASE, APYRASE 2, ARABIDOPSIS THALIANA APYRASE 2, ATAPY2, MRG7.24, MRG7_24  gene ATAPY2  function Encodes an enzyme with ATPase and ADPase activity (an apyrase) that when mutated in combination with ATAPY1 causes a complete inhibition of pollen germination.  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process pollen germination|GO:0009846|12692323|IGI  go_function nucleotide diphosphatase activity|GO:0004551||IDA  go_function ATPase activity|GO:0016887||IDA  product ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2); ATPase/ nucleotide diphosphatase  note ARABIDOPSIS THALIANA APYRASE 2 (ATAPY2); FUNCTIONS IN: nucleotide diphosphatase activity, ATPase activity; INVOLVED IN: pollen germination; LOCATED IN: Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407); BEST Arabidopsis thaliana protein match is: ATAPY1 (APYRASE 1); ATPase/ calmodulin binding / nucleotide diphosphatase (TAIR:AT3G04080.1).  protein_id AT5G18280.2p  transcript_id AT5G18280.2  protein_id AT5G18280.2p  transcript_id AT5G18280.2  
At5g18290	chr5:006056111	0.0	C/6056111-6056407,6055457-6055732,6055198-6055356	AT5G18290.1  CDS  gene_syn F20L16.1, SIP1;2, SIP1B, SMALL AND BASIC INTRINSIC PROTEIN 1B  gene SIP1;2  function Belongs to a family of plant aquaporins.Similar to yeast and radish aquaporins. Located on ER  go_process transport|GO:0006810||IEA  go_component endoplasmic reticulum|GO:0005783|16223486|IDA  go_function water channel activity|GO:0015250|16223486|IDA  go_function water channel activity|GO:0015250|16223486|IGI  product SIP1;2; water channel  note SIP1;2; FUNCTIONS IN: water channel activity; INVOLVED IN: transport; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: SIP1A (SMALL AND BASIC INTRINSIC PROTEIN 1A); water channel (TAIR:AT3G04090.1); Has 1580 Blast hits to 1580 proteins in 278 species: Archae - 11; Bacteria - 95; Metazoa - 452; Fungi - 46; Plants - 924; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT5G18290.1p  transcript_id AT5G18290.1  protein_id AT5G18290.1p  transcript_id AT5G18290.1  
At5g18300	chr5:006057773	0.0	W/6057773-6058216	AT5G18300.1  CDS  gene_syn Arabidopsis NAC domain containing protein 88, F20L16.20, anac088  gene anac088  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac088 (Arabidopsis NAC domain containing protein 88); transcription factor  note Arabidopsis NAC domain containing protein 88 (anac088); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT5G18037.1); Has 1147 Blast hits to 1145 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1147; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G18300.1p  transcript_id AT5G18300.1  protein_id AT5G18300.1p  transcript_id AT5G18300.1  
At5g18310	chr5:006061759	0.0	W/6061759-6061767,6062150-6062261,6062346-6062404,6062524-6062718,6062868-6062912	AT5G18310.1  CDS  gene_syn F20L16.30, F20L16_30  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48500.1); Has 21 Blast hits to 21 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G18310.1p  transcript_id AT5G18310.1  protein_id AT5G18310.1p  transcript_id AT5G18310.1  
At5g18310	chr5:006061759	0.0	W/6061759-6061767,6062150-6062404,6062524-6062718,6062868-6062912	AT5G18310.2  CDS  gene_syn F20L16.30, F20L16_30  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 35 Blast hits to 35 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G18310.2p  transcript_id AT5G18310.2  protein_id AT5G18310.2p  transcript_id AT5G18310.2  
At5g18320	chr5:006065902	0.0	C/6065902-6066186,6064431-6065522	AT5G18320.1  CDS  gene_syn F20L16.40, F20L16_40  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  product armadillo/beta-catenin repeat family protein / U-box domain-containing protein  note armadillo/beta-catenin repeat family protein / U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein (TAIR:AT5G18340.1); Has 1498 Blast hits to 1345 proteins in 138 species: Archae - 0; Bacteria - 16; Metazoa - 85; Fungi - 166; Plants - 1099; Viruses - 3; Other Eukaryotes - 129 (source: NCBI BLink).  protein_id AT5G18320.1p  transcript_id AT5G18320.1  protein_id AT5G18320.1p  transcript_id AT5G18320.1  
At5g18330	chr5:006069779	0.0	C/6069779-6070042,6068474-6069547	AT5G18330.1  CDS  gene_syn F20L16.50, F20L16_50  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  product U-box domain-containing protein  note U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein / U-box domain-containing protein (TAIR:AT5G18320.1); Has 1217 Blast hits to 1160 proteins in 66 species: Archae - 0; Bacteria - 12; Metazoa - 110; Fungi - 0; Plants - 1007; Viruses - 3; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT5G18330.1p  transcript_id AT5G18330.1  protein_id AT5G18330.1p  transcript_id AT5G18330.1  
At5g18340	chr5:006071908	0.0	C/6071908-6072198,6070640-6071719	AT5G18340.1  CDS  gene_syn F20L16.60, F20L16_60  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  product U-box domain-containing protein  note U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: stem, sperm cell, flower, leaf; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein / U-box domain-containing protein (TAIR:AT5G18320.1); Has 1227 Blast hits to 1125 proteins in 123 species: Archae - 0; Bacteria - 6; Metazoa - 136; Fungi - 124; Plants - 892; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT5G18340.1p  transcript_id AT5G18340.1  protein_id AT5G18340.1p  transcript_id AT5G18340.1  
At5g18350	chr5:006078079	0.0	C/6078079-6078569,6076845-6077985,6076462-6076755,6074781-6076346,6074654-6074703,6074069-6074264	AT5G18350.1  CDS  gene_syn F20L16.70, F20L16_70  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor  note ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor; FUNCTIONS IN: transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat 3 (InterPro:IPR011713), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G18370.1); Has 22897 Blast hits to 14419 proteins in 536 species: Archae - 28; Bacteria - 1492; Metazoa - 2619; Fungi - 132; Plants - 17493; Viruses - 8; Other Eukaryotes - 1125 (source: NCBI BLink).  protein_id AT5G18350.1p  transcript_id AT5G18350.1  protein_id AT5G18350.1p  transcript_id AT5G18350.1  
At5g18360	chr5:006082558	0.0	C/6082558-6083027,6081357-6082464,6080962-6081264,6080049-6080870	AT5G18360.1  CDS  gene_syn F20L16.80, F20L16_80  go_component chloroplast|GO:0009507||IEA  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G17970.1); Has 13560 Blast hits to 10737 proteins in 457 species: Archae - 25; Bacteria - 540; Metazoa - 1167; Fungi - 63; Plants - 11281; Viruses - 2; Other Eukaryotes - 482 (source: NCBI BLink).  protein_id AT5G18360.1p  transcript_id AT5G18360.1  protein_id AT5G18360.1p  transcript_id AT5G18360.1  
At5g18362	chr5:006084329	0.0	C/6084329-6084362,6083936-6084088,6083628-6083859,6083088-6083217	AT5G18362.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF689 (InterPro:IPR007785); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18400.3); Has 221 Blast hits to 221 proteins in 97 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 42; Plants - 34; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT5G18362.1p  transcript_id AT5G18362.1  protein_id AT5G18362.1p  transcript_id AT5G18362.1  
At5g18370	chr5:006088313	0.0	C/6088313-6088926,6087107-6088247,6086709-6087002,6085036-6086619	AT5G18370.1  CDS  gene_syn F20L16.90, F20L16_90  go_component intrinsic to membrane|GO:0031224||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952|10559437|TAS  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: stem, inflorescence meristem, hypocotyl, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor (TAIR:AT5G18350.1); Has 14078 Blast hits to 10635 proteins in 403 species: Archae - 14; Bacteria - 1104; Metazoa - 1351; Fungi - 36; Plants - 11048; Viruses - 0; Other Eukaryotes - 525 (source: NCBI BLink).  protein_id AT5G18370.1p  transcript_id AT5G18370.1  protein_id AT5G18370.1p  transcript_id AT5G18370.1  
At5g18380	chr5:006090253	0.0	C/6090253-6090693	AT5G18380.1  CDS  gene_syn F20L16.100, F20L16_100  go_component chloroplast|GO:0009507|18431481|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S16 (RPS16C)  note 40S ribosomal protein S16 (RPS16C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, chloroplast; EXPRESSED IN: fruit, guard cell, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein S9 (InterPro:IPR000754), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S16 (RPS16A) (TAIR:AT2G09990.1); Has 4941 Blast hits to 4941 proteins in 1533 species: Archae - 152; Bacteria - 2655; Metazoa - 264; Fungi - 126; Plants - 110; Viruses - 0; Other Eukaryotes - 1634 (source: NCBI BLink).  protein_id AT5G18380.1p  transcript_id AT5G18380.1  protein_id AT5G18380.1p  transcript_id AT5G18380.1  
At5g18380	chr5:006090311	0.0	C/6090311-6090693,6090128-6090179	AT5G18380.2  CDS  gene_syn F20L16.100, F20L16_100  go_component chloroplast|GO:0009507|18431481|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S16 (RPS16C)  note 40S ribosomal protein S16 (RPS16C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, chloroplast; EXPRESSED IN: guard cell, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein S9 (InterPro:IPR000754), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S16 (RPS16A) (TAIR:AT2G09990.1); Has 2869 Blast hits to 2869 proteins in 853 species: Archae - 152; Bacteria - 1233; Metazoa - 220; Fungi - 119; Plants - 102; Viruses - 0; Other Eukaryotes - 1043 (source: NCBI BLink).  protein_id AT5G18380.2p  transcript_id AT5G18380.2  protein_id AT5G18380.2p  transcript_id AT5G18380.2  
At5g18390	chr5:006090954	0.0	W/6090954-6092333	AT5G18390.1  CDS  gene_syn F20L16.110, F20L16_110  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G65820.1); Has 14680 Blast hits to 4971 proteins in 159 species: Archae - 2; Bacteria - 2; Metazoa - 244; Fungi - 162; Plants - 13880; Viruses - 0; Other Eukaryotes - 390 (source: NCBI BLink).  protein_id AT5G18390.1p  transcript_id AT5G18390.1  protein_id AT5G18390.1p  transcript_id AT5G18390.1  
At5g18400	chr5:006094425	0.0	C/6094425-6094566,6094014-6094180,6093837-6093932,6093454-6093613,6093246-6093376,6093086-6093160,6092955-6092993	AT5G18400.1  CDS  gene_syn F20L16.120, F20L16_120  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF689 (InterPro:IPR007785); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18362.1); Has 310 Blast hits to 309 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 101; Plants - 35; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT5G18400.1p  transcript_id AT5G18400.1  protein_id AT5G18400.1p  transcript_id AT5G18400.1  
At5g18400	chr5:006094874	0.0	C/6094874-6094876,6094425-6094572,6094014-6094180,6093837-6093932,6093454-6093613,6093246-6093376,6093086-6093160,6092955-6092993	AT5G18400.2  CDS  gene_syn F20L16.120, F20L16_120  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF689 (InterPro:IPR007785); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18362.1); Has 310 Blast hits to 309 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 101; Plants - 35; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT5G18400.2p  transcript_id AT5G18400.2  protein_id AT5G18400.2p  transcript_id AT5G18400.2  
At5g18400	chr5:006094874	0.0	C/6094874-6094876,6094425-6094572,6094014-6094180,6093837-6093932,6093454-6093613,6093246-6093376,6093086-6093160,6092955-6092993	AT5G18400.3  CDS  gene_syn F20L16.120, F20L16_120  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF689 (InterPro:IPR007785); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18362.1); Has 310 Blast hits to 309 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 101; Plants - 35; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT5G18400.3p  transcript_id AT5G18400.3  protein_id AT5G18400.3p  transcript_id AT5G18400.3  
At5g18403	chr5:006095343	0.0	W/6095343-6095391,6095501-6095715	AT5G18403.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G18403.1p  transcript_id AT5G18403.1  protein_id AT5G18403.1p  transcript_id AT5G18403.1  
At5g18404	chr5:006096149	0.0	W/6096149-6096406	AT5G18404.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G18404.1p  transcript_id AT5G18404.1  protein_id AT5G18404.1p  transcript_id AT5G18404.1  
At5g18407	chr5:006096781	0.0	W/6096781-6096829,6096949-6097124	AT5G18407.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08485.1); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G18407.1p  transcript_id AT5G18407.1  protein_id AT5G18407.1p  transcript_id AT5G18407.1  
At5g18410	chr5:006104730	0.0	C/6104730-6104783,6104344-6104416,6104196-6104260,6103978-6104055,6103521-6103640,6103364-6103434,6103176-6103268,6102922-6102991,6102768-6102832,6102427-6102622,6102166-6102317,6101968-6102061,6101669-6101878,6101387-6101598,6101140-6101284,6100885-6101053,6100711-6100787,6100443-6100613,6100255-6100331,6100058-6100160,6099766-6099885,6099529-6099672,6099310-6099453,6099023-6099166,6098839-6098926,6098593-6098753	AT5G18410.3  CDS  gene_syn F20L16.130, F20L16_130, KLK, KLUNKER, PIR, PIR121, PIROGI, PIRP, SRA1  gene PIR121  function distorted trichomes and exhibits a diffuse actin cytoskeleton  go_component SCAR complex|GO:0031209|15296761|TAS  go_process trichome morphogenesis|GO:0010090|15296761|IMP  go_process actin cytoskeleton organization|GO:0030036|10572033|IMP  go_process actin nucleation|GO:0045010|15296761|TAS  go_function transcription activator activity|GO:0016563|15653407|TAS  product PIR121; transcription activator  note PIR121; FUNCTIONS IN: transcription activator activity; INVOLVED IN: actin nucleation, trichome morphogenesis, actin cytoskeleton organization; LOCATED IN: SCAR complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytoplasmic FMR1-interacting (InterPro:IPR008081); Has 247 Blast hits to 238 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 180; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT5G18410.3p  transcript_id AT5G18410.3  protein_id AT5G18410.3p  transcript_id AT5G18410.3  
At5g18410	chr5:006104730	0.0	C/6104730-6104783,6104344-6104416,6104196-6104260,6103978-6104055,6103521-6103640,6103364-6103434,6103176-6103268,6102922-6102991,6102768-6102832,6102427-6102622,6102166-6102317,6101968-6102061,6101669-6101878,6101387-6101598,6101140-6101284,6100885-6101053,6100711-6100787,6100443-6100613,6100255-6100331,6100058-6100160,6099766-6099885,6099529-6099672,6099310-6099453,6099023-6099166,6098839-6098926,6098617-6098753,6098332-6098530,6098060-6098232,6097752-6097958,6097456-6097656	AT5G18410.1  CDS  gene_syn F20L16.130, F20L16_130, KLK, KLUNKER, PIR, PIR121, PIROGI, PIRP, SRA1  gene PIR121  function distorted trichomes and exhibits a diffuse actin cytoskeleton  go_component SCAR complex|GO:0031209|15296761|TAS  go_process trichome morphogenesis|GO:0010090|15296761|IMP  go_process actin cytoskeleton organization|GO:0030036|10572033|IMP  go_process actin nucleation|GO:0045010|15296761|TAS  go_function transcription activator activity|GO:0016563|15653407|TAS  product PIR121; transcription activator  note PIR121; FUNCTIONS IN: transcription activator activity; INVOLVED IN: actin nucleation, trichome morphogenesis, actin cytoskeleton organization; LOCATED IN: SCAR complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytoplasmic FMR1-interacting (InterPro:IPR008081), Cytoplasmic FMR1-interacting, subgroup (InterPro:IPR016536); Has 260 Blast hits to 251 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 190; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT5G18410.1p  transcript_id AT5G18410.1  protein_id AT5G18410.1p  transcript_id AT5G18410.1  
At5g18410	chr5:006104730	0.0	C/6104730-6104783,6104344-6104416,6104196-6104260,6103978-6104055,6103521-6103640,6103364-6103434,6103176-6103268,6102922-6102991,6102768-6102832,6102427-6102622,6102166-6102317,6101968-6102061,6101669-6101878,6101387-6101598,6101140-6101284,6100885-6101053,6100711-6100787,6100443-6100613,6100255-6100331,6100058-6100160,6099766-6099885,6099529-6099672,6099310-6099453,6099023-6099166,6098839-6098926,6098626-6098753,6098332-6098536,6098060-6098232,6097752-6097958,6097456-6097656	AT5G18410.2  CDS  gene_syn F20L16.130, F20L16_130, KLK, KLUNKER, PIR, PIR121, PIROGI, PIRP, SRA1  gene PIR121  function distorted trichomes and exhibits a diffuse actin cytoskeleton  go_component SCAR complex|GO:0031209|15296761|TAS  go_process trichome morphogenesis|GO:0010090|15296761|IMP  go_process actin cytoskeleton organization|GO:0030036|10572033|IMP  go_process actin nucleation|GO:0045010|15296761|TAS  go_function transcription activator activity|GO:0016563|15653407|TAS  product PIR121; transcription activator  note PIR121; FUNCTIONS IN: transcription activator activity; INVOLVED IN: actin nucleation, trichome morphogenesis, actin cytoskeleton organization; LOCATED IN: SCAR complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytoplasmic FMR1-interacting (InterPro:IPR008081), Cytoplasmic FMR1-interacting, subgroup (InterPro:IPR016536); Has 260 Blast hits to 251 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 190; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT5G18410.2p  transcript_id AT5G18410.2  protein_id AT5G18410.2p  transcript_id AT5G18410.2  
At5g18420	chr5:006109170	0.0	C/6109170-6109337,6108702-6108803,6108272-6108358,6107905-6107958,6107601-6107746,6107274-6107424,6107059-6107196,6106576-6106647,6106427-6106500,6106200-6106341,6105905-6105989,6105638-6105738	AT5G18420.3  CDS  gene_syn F20L16.140, F20L16_140  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 175 Blast hits to 175 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT5G18420.3p  transcript_id AT5G18420.3  protein_id AT5G18420.3p  transcript_id AT5G18420.3  
At5g18420	chr5:006109170	0.0	C/6109170-6109337,6108702-6108812,6108272-6108358,6107905-6107958,6107601-6107746,6107274-6107424,6107059-6107196,6106576-6106647,6106427-6106500,6106200-6106341,6105905-6105986,6105638-6105738	AT5G18420.1  CDS  gene_syn F20L16.140, F20L16_140  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 177 Blast hits to 177 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT5G18420.1p  transcript_id AT5G18420.1  protein_id AT5G18420.1p  transcript_id AT5G18420.1  
At5g18420	chr5:006109170	0.0	C/6109170-6109337,6108702-6108812,6108272-6108358,6107905-6107958,6107601-6107746,6107274-6107424,6107059-6107196,6106576-6106647,6106427-6106500,6106200-6106341,6105905-6105989,6105638-6105738	AT5G18420.2  CDS  gene_syn F20L16.140, F20L16_140  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 177 Blast hits to 177 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT5G18420.2p  transcript_id AT5G18420.2  protein_id AT5G18420.2p  transcript_id AT5G18420.2  
At5g18430	chr5:006111697	0.0	C/6111697-6111934,6111433-6111563,6111101-6111343,6110668-6110923,6110363-6110583	AT5G18430.1  CDS  gene_syn F20L16.150, F20L16_150  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: LTL1 (LI-TOLERANT LIPASE 1); carboxylesterase/ hydrolase, acting on ester bonds (TAIR:AT3G04290.1); Has 1711 Blast hits to 1695 proteins in 119 species: Archae - 0; Bacteria - 152; Metazoa - 1; Fungi - 2; Plants - 1543; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT5G18430.1p  transcript_id AT5G18430.1  protein_id AT5G18430.1p  transcript_id AT5G18430.1  
At5g18440	chr5:006113092	0.0	W/6113092-6113169,6113278-6113709,6113813-6113910,6113991-6114067,6114360-6114429,6114621-6114711,6114803-6114862,6115242-6115748	AT5G18440.1  CDS  gene_syn F20L16.160, F20L16_160  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1233 Blast hits to 1114 proteins in 157 species: Archae - 0; Bacteria - 93; Metazoa - 319; Fungi - 137; Plants - 52; Viruses - 6; Other Eukaryotes - 626 (source: NCBI BLink).  protein_id AT5G18440.1p  transcript_id AT5G18440.1  protein_id AT5G18440.1p  transcript_id AT5G18440.1  
At5g18440	chr5:006113092	0.0	W/6113092-6113169,6113278-6113709,6113813-6113910,6113991-6114067,6114360-6114429,6114621-6114711,6114803-6114862,6115242-6115748	AT5G18440.2  CDS  gene_syn F20L16.160, F20L16_160  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1233 Blast hits to 1114 proteins in 157 species: Archae - 0; Bacteria - 93; Metazoa - 319; Fungi - 137; Plants - 52; Viruses - 6; Other Eukaryotes - 626 (source: NCBI BLink).  protein_id AT5G18440.2p  transcript_id AT5G18440.2  protein_id AT5G18440.2p  transcript_id AT5G18440.2  
At5g18450	chr5:006116097	0.0	C/6116097-6117020	AT5G18450.1  CDS  gene_syn F20L16.170, F20L16_170  function encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: stem, fruit, root, seed; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT1G75490.1); Has 3563 Blast hits to 3512 proteins in 198 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 3549; Viruses - 2; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G18450.1p  transcript_id AT5G18450.1  protein_id AT5G18450.1p  transcript_id AT5G18450.1  
At5g18460	chr5:006123205	0.0	W/6123205-6123402,6123499-6123585,6123866-6124123,6124653-6124823,6124958-6125011,6125728-6125874,6126128-6126505	AT5G18460.1  CDS  gene_syn F20L16.180, F20L16_180  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23340.2); Has 445 Blast hits to 408 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 10; Plants - 431; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G18460.1p  transcript_id AT5G18460.1  protein_id AT5G18460.1p  transcript_id AT5G18460.1  
At5g18470	chr5:006127952	0.0	W/6127952-6129193	AT5G18470.1  CDS  gene_syn T28N17.6  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_function sugar binding|GO:0005529||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process biological_process|GO:0008150||ND  go_function sugar binding|GO:0005529||ISS  product curculin-like (mannose-binding) lectin family protein  note curculin-like (mannose-binding) lectin family protein; FUNCTIONS IN: sugar binding; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480); BEST Arabidopsis thaliana protein match is: lectin protein kinase family protein (TAIR:AT1G67520.1); Has 1431 Blast hits to 1396 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1431; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G18470.1p  transcript_id AT5G18470.1  protein_id AT5G18470.1p  transcript_id AT5G18470.1  
At5g18475	chr5:006129255	0.0	C/6129255-6130775	AT5G18475.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: MEE40 (maternal effect embryo arrest 40) (TAIR:AT3G53700.1); Has 19623 Blast hits to 5874 proteins in 176 species: Archae - 4; Bacteria - 16; Metazoa - 456; Fungi - 363; Plants - 18095; Viruses - 0; Other Eukaryotes - 689 (source: NCBI BLink).  protein_id AT5G18475.1p  transcript_id AT5G18475.1  protein_id AT5G18475.1p  transcript_id AT5G18475.1  
At5g18480	chr5:006133551	0.0	C/6133551-6133787,6133306-6133426,6132874-6133223,6132552-6132659,6132335-6132469,6132126-6132248,6131769-6132039,6131548-6131671,6131307-6131451	AT5G18480.1  CDS  gene_syn PGSIP6, PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 6, T28N17.3  gene PGSIP6  go_component membrane|GO:0016020|17432890|IDA  go_function transferase activity, transferring glycosyl groups|GO:0016757||IEA  go_process biosynthetic process|GO:0009058||ISS  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product PGSIP6 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 6); transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 6 (PGSIP6); FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process, biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: guard cell, leaf; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: PGSIP5 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 5); transferase, transferring glycosyl groups (TAIR:AT1G08990.1); Has 919 Blast hits to 918 proteins in 192 species: Archae - 0; Bacteria - 38; Metazoa - 226; Fungi - 219; Plants - 300; Viruses - 72; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT5G18480.1p  transcript_id AT5G18480.1  protein_id AT5G18480.1p  transcript_id AT5G18480.1  
At5g18490	chr5:006136446	0.0	C/6136446-6136554,6134275-6135827	AT5G18490.1  CDS  gene_syn T28N17.2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946, plant (InterPro:IPR009291); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04350.1); Has 264 Blast hits to 245 proteins in 68 species: Archae - 0; Bacteria - 15; Metazoa - 18; Fungi - 99; Plants - 126; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G18490.1p  transcript_id AT5G18490.1  protein_id AT5G18490.1p  transcript_id AT5G18490.1  
At5g18500	chr5:006139263	0.0	W/6139263-6139861,6139955-6140059,6140142-6140264,6140350-6140520,6140624-6140753,6140842-6141054,6141170-6141283	AT5G18500.1  CDS  gene_syn T28N17.1  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: GPK1; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT3G17420.1); Has 86619 Blast hits to 85559 proteins in 3151 species: Archae - 58; Bacteria - 8175; Metazoa - 37929; Fungi - 6495; Plants - 18661; Viruses - 395; Other Eukaryotes - 14906 (source: NCBI BLink).  protein_id AT5G18500.1p  transcript_id AT5G18500.1  protein_id AT5G18500.1p  transcript_id AT5G18500.1  
At5g18500	chr5:006139263	0.0	W/6139263-6139861,6139955-6140059,6140142-6140264,6140350-6140520,6140624-6140753,6140842-6141054,6141170-6141283	AT5G18500.2  CDS  gene_syn T28N17.1  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: GPK1; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT3G17420.1); Has 86619 Blast hits to 85559 proteins in 3151 species: Archae - 58; Bacteria - 8175; Metazoa - 37929; Fungi - 6495; Plants - 18661; Viruses - 395; Other Eukaryotes - 14906 (source: NCBI BLink).  protein_id AT5G18500.2p  transcript_id AT5G18500.2  protein_id AT5G18500.2p  transcript_id AT5G18500.2  
At5g18510	chr5:006141778	0.0	C/6141778-6143886	AT5G18510.1  CDS  gene_syn T28N17.4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G50830.1); Has 541 Blast hits to 537 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 37; Fungi - 4; Plants - 495; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G18510.1p  transcript_id AT5G18510.1  protein_id AT5G18510.1p  transcript_id AT5G18510.1  
At5g18520	chr5:006145027	0.0	W/6145027-6146349	AT5G18520.1  CDS  gene_syn T28N17.5  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  product unknown protein  note LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09570.1); Has 385 Blast hits to 381 proteins in 83 species: Archae - 0; Bacteria - 2; Metazoa - 213; Fungi - 14; Plants - 131; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT5G18520.1p  transcript_id AT5G18520.1  protein_id AT5G18520.1p  transcript_id AT5G18520.1  
At5g18525	chr5:006153524	0.0	C/6153524-6153658,6153320-6153435,6151163-6153235,6150672-6150999,6150340-6150555,6150150-6150222,6149856-6150061,6149698-6149760,6149155-6149363,6148965-6149076,6148372-6148857,6147973-6148265,6147636-6147879,6147487-6147560,6147259-6147394,6146932-6147087	AT5G18525.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  product ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beige/BEACH (InterPro:IPR000409), Serine/threonine protein kinase (InterPro:IPR002290), WD40 repeat (InterPro:IPR001680), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), Tyrosine protein kinase, active site (InterPro:IPR008266), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein / beige-related (TAIR:AT2G45540.1); Has 2494 Blast hits to 2059 proteins in 239 species: Archae - 4; Bacteria - 759; Metazoa - 719; Fungi - 597; Plants - 148; Viruses - 0; Other Eukaryotes - 267 (source: NCBI BLink).  protein_id AT5G18525.1p  transcript_id AT5G18525.1  protein_id AT5G18525.1p  transcript_id AT5G18525.1  
At5g18540	chr5:006153924	0.0	W/6153924-6154039,6154128-6154282,6155398-6155456,6155560-6155673,6155815-6155877	AT5G18540.1  CDS  gene_syn T28N17.20, T28N17_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; Has 2276 Blast hits to 850 proteins in 109 species: Archae - 2; Bacteria - 9; Metazoa - 1490; Fungi - 256; Plants - 238; Viruses - 0; Other Eukaryotes - 281 (source: NCBI BLink).  protein_id AT5G18540.1p  transcript_id AT5G18540.1  protein_id AT5G18540.1p  transcript_id AT5G18540.1  
At5g18540	chr5:006153924	0.0	W/6153924-6154039,6154128-6154282,6155398-6155456,6155560-6155673,6155821-6155877	AT5G18540.2  CDS  gene_syn T28N17.20, T28N17_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; Has 1917 Blast hits to 677 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 1257; Fungi - 199; Plants - 227; Viruses - 0; Other Eukaryotes - 234 (source: NCBI BLink).  protein_id AT5G18540.2p  transcript_id AT5G18540.2  protein_id AT5G18540.2p  transcript_id AT5G18540.2  
At5g18550	chr5:006160515	0.0	W/6160515-6160605,6160746-6160900,6161133-6161198,6161339-6161464,6161566-6161871,6161949-6162242,6162370-6162729	AT5G18550.1  CDS  gene_syn T28N17.30, T28N17_30  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product nucleic acid binding / zinc ion binding  note nucleic acid binding / zinc ion binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: nucleic acid binding / zinc ion binding (TAIR:AT3G06410.1); Has 2403 Blast hits to 980 proteins in 158 species: Archae - 0; Bacteria - 30; Metazoa - 563; Fungi - 234; Plants - 615; Viruses - 0; Other Eukaryotes - 961 (source: NCBI BLink).  protein_id AT5G18550.1p  transcript_id AT5G18550.1  protein_id AT5G18550.1p  transcript_id AT5G18550.1  
At5g18560	chr5:006164859	0.0	C/6164859-6165905	AT5G18560.1  CDS  gene_syn PUCHI, T28N17.40, T28N17_40  gene PUCHI  function encodes PUCHI, a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. PUCHI is required for morphogenesis in the early lateral root primordium of Arabidopsis.  go_component nucleus|GO:0005634|17630277|IEP  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process flower development|GO:0009908|17630277|IMP  go_process lateral root morphogenesis|GO:0010102|17630277|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product PUCHI; DNA binding / transcription factor  note PUCHI; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: flower development, lateral root morphogenesis, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: LEP (LEAFY PETIOLE); DNA binding / transcription factor (TAIR:AT5G13910.1); Has 3543 Blast hits to 3461 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 3529; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT5G18560.1p  transcript_id AT5G18560.1  protein_id AT5G18560.1p  transcript_id AT5G18560.1  
At5g18570	chr5:006173718	0.0	C/6173718-6174823,6172875-6173148,6172493-6172784,6172241-6172406,6172046-6172154,6171839-6171937	AT5G18570.1  CDS  gene_syn T28N17.50, T28N17_50  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function GTP binding|GO:0005525||IEA  product GTP1/OBG family protein  note GTP1/OBG family protein; FUNCTIONS IN: GTP binding, nucleotide binding; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG subdomain (InterPro:IPR006169), GTP-binding protein GTP1/OBG, C-terminal (InterPro:IPR015349), GTP1/OBG (InterPro:IPR006073), GTP1/OBG, conserved site (InterPro:IPR006074), GTP-binding protein, HSR1-related (InterPro:IPR002917), GTP-binding protein Obg/CgtA (InterPro:IPR014100); BEST Arabidopsis thaliana protein match is: GTP binding (TAIR:AT1G07615.1); Has 15738 Blast hits to 15160 proteins in 1621 species: Archae - 397; Bacteria - 6960; Metazoa - 1374; Fungi - 562; Plants - 242; Viruses - 53; Other Eukaryotes - 6150 (source: NCBI BLink).  protein_id AT5G18570.1p  transcript_id AT5G18570.1  protein_id AT5G18570.1p  transcript_id AT5G18570.1  
At5g18580	chr5:006175154	0.0	W/6175154-6175295,6175548-6175639,6175795-6175857,6175935-6176033,6176119-6176277,6176510-6176581,6176725-6176857,6176952-6177016,6177128-6177203,6177314-6177415,6177501-6177693,6177968-6178214	AT5G18580.1  CDS  gene_syn EMB40, EMBRYO DEFECTIVE 40, FASS, FASS 1, FASS 2, FS1, GDO, GORDO, T28N17.60, T28N17_60, TON2, TONNEAU 2  gene FASS  function fass mutants have aberrant cell shapes due to defects in arrangement of cortical microtubules. Encodes a protein highly conserved in higher plants and similar in its C-terminal part to B  regulatory subunits of type 2A protein phosphatases. Interacts with an Arabidopsis type A subunit of PP2A in the yeast two-hybrid system.  go_component nucleus|GO:0005634|15469496|IDA  go_component cytoplasm|GO:0005737|15469496|IDA  go_component spindle|GO:0005819|15469496|IDA  go_component phragmoplast|GO:0009524|15469496|IDA  go_process microtubule cytoskeleton organization|GO:0000226|11971138|IMP  go_process unidimensional cell growth|GO:0009826|9129335|TAS  go_function protein phosphatase type 2B regulator activity|GO:0030359|11971138|ISS  product FASS (FASS 1); protein phosphatase type 2B regulator  note FASS 1 (FASS); FUNCTIONS IN: protein phosphatase type 2B regulator activity; INVOLVED IN: microtubule cytoskeleton organization, unidimensional cell growth; LOCATED IN: nucleus, spindle, phragmoplast, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT5G28850.2); Has 467 Blast hits to 452 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 272; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).  protein_id AT5G18580.1p  transcript_id AT5G18580.1  protein_id AT5G18580.1p  transcript_id AT5G18580.1  
At5g18590	chr5:006182149	0.0	C/6182149-6182186,6181702-6181783,6181494-6181616,6181334-6181411,6181152-6181256,6181001-6181067,6180865-6180926,6180624-6180763,6180403-6180529,6180209-6180323,6180054-6180142,6179865-6179948,6179411-6179782,6178826-6179329,6178681-6178740,6178516-6178596	AT5G18590.1  CDS  gene_syn T28N17.70, T28N17_70  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing protein  note kelch repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: ACBP4 (ACYL-COA BINDING PROTEIN 4); acyl-CoA binding (TAIR:AT3G05420.2); Has 6904 Blast hits to 3522 proteins in 233 species: Archae - 14; Bacteria - 240; Metazoa - 3345; Fungi - 666; Plants - 992; Viruses - 6; Other Eukaryotes - 1641 (source: NCBI BLink).  protein_id AT5G18590.1p  transcript_id AT5G18590.1  protein_id AT5G18590.1p  transcript_id AT5G18590.1  
At5g18590	chr5:006182149	0.0	C/6182149-6182186,6181702-6181783,6181494-6181616,6181334-6181411,6181152-6181256,6181001-6181067,6180865-6180926,6180624-6180763,6180403-6180529,6180209-6180323,6180054-6180142,6179865-6179948,6179411-6179782,6178826-6179329,6178681-6178740,6178516-6178596	AT5G18590.2  CDS  gene_syn T28N17.70, T28N17_70  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing protein  note kelch repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: ACBP4 (ACYL-COA BINDING PROTEIN 4); acyl-CoA binding (TAIR:AT3G05420.2); Has 6904 Blast hits to 3522 proteins in 233 species: Archae - 14; Bacteria - 240; Metazoa - 3345; Fungi - 666; Plants - 992; Viruses - 6; Other Eukaryotes - 1641 (source: NCBI BLink).  protein_id AT5G18590.2p  transcript_id AT5G18590.2  protein_id AT5G18590.2p  transcript_id AT5G18590.2  
At5g18600	chr5:006183466	0.0	C/6183466-6183774	AT5G18600.1  CDS  gene_syn T28N17.80, T28N17_80  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  go_component cellular_component|GO:0005575||ND  go_function arsenate reductase (glutaredoxin) activity|GO:0008794||ISS  product glutaredoxin family protein  note glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutaredoxin subgroup (InterPro:IPR014025), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin family protein (TAIR:AT4G15680.1); Has 1277 Blast hits to 1274 proteins in 202 species: Archae - 0; Bacteria - 76; Metazoa - 416; Fungi - 252; Plants - 428; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT5G18600.1p  transcript_id AT5G18600.1  protein_id AT5G18600.1p  transcript_id AT5G18600.1  
At5g18610	chr5:006192736	0.0	W/6192736-6192856,6193439-6193638,6193711-6193900,6194178-6194569,6194733-6195371	AT5G18610.1  CDS  gene_syn T28N17.90, T28N17_90  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: PBS1 (avrPphB susceptible 1); kinase/ protein serine/threonine kinase (TAIR:AT5G13160.1); Has 84687 Blast hits to 83614 proteins in 3036 species: Archae - 54; Bacteria - 7595; Metazoa - 37501; Fungi - 6540; Plants - 18758; Viruses - 359; Other Eukaryotes - 13880 (source: NCBI BLink).  protein_id AT5G18610.1p  transcript_id AT5G18610.1  protein_id AT5G18610.1p  transcript_id AT5G18610.1  
At5g18620	chr5:006201846	0.0	C/6201846-6202058,6201430-6201561,6201246-6201352,6201041-6201153,6200722-6200819,6200450-6200629,6200145-6200366,6199800-6199934,6199448-6199730,6199292-6199365,6198960-6199180,6198796-6198883,6198626-6198719,6198354-6198542,6198229-6198263,6198037-6198113,6197851-6197940,6197683-6197752,6197534-6197588,6197403-6197461,6197152-6197317,6196862-6197040,6196553-6196768,6196327-6196431,6196190-6196207	AT5G18620.2  CDS  gene_syn CHR17, CHROMATIN REMODELING FACTOR17, T1A4.2  gene CHR17  go_component nucleus|GO:0005634||IEA  go_component chromatin remodeling complex|GO:0016585||IEA  go_process chromatin remodeling|GO:0006338||IEA  go_process ATP-dependent chromatin remodeling|GO:0043044||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides|GO:0016818||IEA  go_function nucleosome binding|GO:0031491||IEA  go_function DNA-dependent ATPase activity|GO:0008094||ISS  product CHR17 (CHROMATIN REMODELING FACTOR17); ATP binding / DNA binding / DNA-dependent ATPase/ helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding / nucleosome binding  note CHROMATIN REMODELING FACTOR17 (CHR17); FUNCTIONS IN: in 7 functions; INVOLVED IN: ATP-dependent chromatin remodeling, chromatin remodeling; LOCATED IN: nucleus, chromatin remodeling complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, nucleosome remodelling ISWI, HAND domain (InterPro:IPR015194), SANT, eukarya (InterPro:IPR017884), SNF2-related (InterPro:IPR000330), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), SLIDE (InterPro:IPR015195), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: CHR11 (CHROMATIN-REMODELING PROTEIN 11); ATP binding / DNA binding / DNA-dependent ATPase/ helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding / nucleosome binding (TAIR:AT3G06400.1); Has 19924 Blast hits to 15142 proteins in 1291 species: Archae - 93; Bacteria - 3277; Metazoa - 6471; Fungi - 3450; Plants - 1004; Viruses - 457; Other Eukaryotes - 5172 (source: NCBI BLink).  protein_id AT5G18620.2p  transcript_id AT5G18620.2  protein_id AT5G18620.2p  transcript_id AT5G18620.2  
At5g18620	chr5:006201846	0.0	C/6201846-6202058,6201430-6201561,6201246-6201352,6201041-6201153,6200722-6200819,6200450-6200629,6200145-6200366,6199800-6199934,6199448-6199730,6199292-6199365,6198960-6199180,6198796-6198883,6198626-6198719,6198354-6198542,6198229-6198263,6198037-6198113,6197851-6197940,6197683-6197752,6197534-6197588,6197403-6197461,6197152-6197317,6196862-6197040,6196553-6196768,6196336-6196431,6196190-6196207	AT5G18620.1  CDS  gene_syn CHR17, CHROMATIN REMODELING FACTOR17, T1A4.2  gene CHR17  go_component nucleus|GO:0005634||IEA  go_component chromatin remodeling complex|GO:0016585||IEA  go_process chromatin remodeling|GO:0006338||IEA  go_process ATP-dependent chromatin remodeling|GO:0043044||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides|GO:0016818||IEA  go_function nucleosome binding|GO:0031491||IEA  go_function DNA-dependent ATPase activity|GO:0008094||ISS  product CHR17 (CHROMATIN REMODELING FACTOR17); ATP binding / DNA binding / DNA-dependent ATPase/ helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding / nucleosome binding  note CHROMATIN REMODELING FACTOR17 (CHR17); FUNCTIONS IN: in 7 functions; INVOLVED IN: ATP-dependent chromatin remodeling, chromatin remodeling; LOCATED IN: nucleus, chromatin remodeling complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, nucleosome remodelling ISWI, HAND domain (InterPro:IPR015194), SANT, eukarya (InterPro:IPR017884), SNF2-related (InterPro:IPR000330), SANT, DNA-binding (InterPro:IPR001005), SLIDE (InterPro:IPR015195), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: CHR11 (CHROMATIN-REMODELING PROTEIN 11); ATP binding / DNA binding / DNA-dependent ATPase/ helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding / nucleosome binding (TAIR:AT3G06400.1); Has 19920 Blast hits to 15135 proteins in 1290 species: Archae - 93; Bacteria - 3277; Metazoa - 6469; Fungi - 3450; Plants - 1004; Viruses - 457; Other Eukaryotes - 5170 (source: NCBI BLink).  protein_id AT5G18620.1p  transcript_id AT5G18620.1  protein_id AT5G18620.1p  transcript_id AT5G18620.1  
At5g18630	chr5:006202965	0.0	W/6202965-6203034,6203416-6203495,6203728-6203793,6203883-6203930,6204028-6204095,6204178-6204250,6204331-6204495,6204582-6204776,6204937-6205028,6205232-6205448	AT5G18630.2  CDS  gene_syn T1A4.10, T1A4_10  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product lipase class 3 family protein  note lipase class 3 family protein; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: lipase class 3 family protein (TAIR:AT5G18640.1); Has 1389 Blast hits to 1386 proteins in 240 species: Archae - 0; Bacteria - 253; Metazoa - 123; Fungi - 335; Plants - 341; Viruses - 9; Other Eukaryotes - 328 (source: NCBI BLink).  protein_id AT5G18630.2p  transcript_id AT5G18630.2  protein_id AT5G18630.2p  transcript_id AT5G18630.2  
At5g18630	chr5:006202965	0.0	W/6202965-6203034,6203416-6203495,6203728-6203793,6203883-6203930,6204028-6204095,6204178-6204250,6204331-6204495,6204582-6204776,6204937-6205032	AT5G18630.3  CDS  gene_syn T1A4.10, T1A4_10  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product lipase class 3 family protein  note lipase class 3 family protein; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: lipase class 3 family protein (TAIR:AT5G18640.1); Has 1380 Blast hits to 1377 proteins in 239 species: Archae - 0; Bacteria - 253; Metazoa - 121; Fungi - 331; Plants - 341; Viruses - 9; Other Eukaryotes - 325 (source: NCBI BLink).  protein_id AT5G18630.3p  transcript_id AT5G18630.3  protein_id AT5G18630.3p  transcript_id AT5G18630.3  
At5g18630	chr5:006202965	0.0	W/6202965-6203037,6203416-6203495,6203728-6203793,6203883-6203930,6204028-6204095,6204178-6204250,6204331-6204495,6204582-6204776,6204937-6205028,6205232-6205448	AT5G18630.1  CDS  gene_syn T1A4.10, T1A4_10  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product lipase class 3 family protein  note lipase class 3 family protein; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: lipase class 3 family protein (TAIR:AT5G18640.1); Has 1391 Blast hits to 1388 proteins in 240 species: Archae - 0; Bacteria - 253; Metazoa - 123; Fungi - 335; Plants - 341; Viruses - 9; Other Eukaryotes - 330 (source: NCBI BLink).  protein_id AT5G18630.1p  transcript_id AT5G18630.1  protein_id AT5G18630.1p  transcript_id AT5G18630.1  
At5g18633	chr5:006205813	0.0	W/6205813-6210644	AT5G18633.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.8e-39 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)  
At5g18636	chr5:006211268	0.0	W/6211268-6212371	AT5G18636.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25200.1); Has 146 Blast hits to 146 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 146; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G18636.1p  transcript_id AT5G18636.1  protein_id AT5G18636.1p  transcript_id AT5G18636.1  
At5g18640	chr5:006213247	0.0	W/6213247-6213352,6213496-6213575,6213767-6213832,6213937-6213984,6214083-6214150,6214232-6214304,6214384-6214548,6214642-6214836,6214959-6215050,6215278-6215494	AT5G18640.1  CDS  gene_syn T1A4.20, T1A4_20  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product lipase class 3 family protein  note lipase class 3 family protein; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: lipase class 3 family protein (TAIR:AT5G18630.2); Has 1473 Blast hits to 1470 proteins in 254 species: Archae - 0; Bacteria - 280; Metazoa - 126; Fungi - 333; Plants - 373; Viruses - 9; Other Eukaryotes - 352 (source: NCBI BLink).  protein_id AT5G18640.1p  transcript_id AT5G18640.1  protein_id AT5G18640.1p  transcript_id AT5G18640.1  
At5g18650	chr5:006218260	0.0	W/6218260-6218309,6218656-6218743,6218836-6218892,6218981-6219013,6219123-6219200,6219292-6219335,6219429-6219469,6219567-6219649,6219737-6219828,6219933-6220002,6220089-6220130,6220249-6220374	AT5G18650.1  CDS  gene_syn T1A4.30, T1A4_30  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CTCHY-type (InterPro:IPR017921), Zinc finger, CHY-type (InterPro:IPR008913), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT3G62970.1); Has 451 Blast hits to 446 proteins in 115 species: Archae - 2; Bacteria - 0; Metazoa - 141; Fungi - 75; Plants - 124; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).  protein_id AT5G18650.1p  transcript_id AT5G18650.1  protein_id AT5G18650.1p  transcript_id AT5G18650.1  
At5g18660	chr5:006220872	0.0	C/6220872-6222125	AT5G18660.1  CDS  gene_syn DIVINYL PROTOCHLOROPHYLLIDE 8-VINYL REDUCTASE, PALE-GREEN AND CHLOROPHYLL B REDUCED 2, PCB2, T1A4.40, T1A4_40  gene PCB2  function Encodes a protein with 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity. Mutants accumulate divinyl chlorophyll rather than monovinyl chlorophyll.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component chloroplast|GO:0009507|15695432|IDA  go_process chlorophyll biosynthetic process|GO:0015995|15632054|TAS  go_process chlorophyll biosynthetic process|GO:0015995|15695432|IMP  go_function 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity|GO:0051744|15632054|IDA  product PCB2 (PALE-GREEN AND CHLOROPHYLL B REDUCED 2); 3,8-divinyl protochlorophyllide a 8-vinyl reductase  note PALE-GREEN AND CHLOROPHYLL B REDUCED 2 (PCB2); FUNCTIONS IN: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: binding / catalytic/ coenzyme binding (TAIR:AT3G18890.1); Has 2097 Blast hits to 2097 proteins in 485 species: Archae - 28; Bacteria - 1077; Metazoa - 50; Fungi - 37; Plants - 248; Viruses - 0; Other Eukaryotes - 657 (source: NCBI BLink).  protein_id AT5G18660.1p  transcript_id AT5G18660.1  protein_id AT5G18660.1p  transcript_id AT5G18660.1  
At5g18661	chr5:006222520	0.0	C/6222520-6222678	AT5G18661.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G18661.1p  transcript_id AT5G18661.1  protein_id AT5G18661.1p  transcript_id AT5G18661.1  
At5g18670	chr5:006226138	0.0	W/6226138-6226386,6226543-6227025,6227121-6227999	AT5G18670.1  CDS  gene_syn BAM9, BMY3, T1A4.50, T1A4_50, beta-amylase 9  gene BMY3  function putative beta-amylase BMY3 (BMY3)  go_process polysaccharide catabolic process|GO:0000272||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process cellulose biosynthetic process|GO:0030244||IEA  go_function catalytic activity|GO:0003824||IEA  go_function beta-amylase activity|GO:0016161||IEA  go_function cation binding|GO:0043169||IEA  go_function beta-amylase activity|GO:0016161||ISS  product BMY3; beta-amylase/ catalytic/ cation binding  note BMY3; FUNCTIONS IN: cation binding, beta-amylase activity, catalytic activity; INVOLVED IN: cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: CT-BMY (CHLOROPLAST BETA-AMYLASE); beta-amylase (TAIR:AT4G17090.1); Has 508 Blast hits to 507 proteins in 117 species: Archae - 0; Bacteria - 68; Metazoa - 0; Fungi - 0; Plants - 382; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT5G18670.1p  transcript_id AT5G18670.1  protein_id AT5G18670.1p  transcript_id AT5G18670.1  
At5g18680	chr5:006230118	0.0	C/6230118-6230426,6229732-6229819,6229467-6229596,6229066-6229242,6228358-6228823	AT5G18680.1  CDS  gene_syn AtTLP11, T1A4.60, T1A4_60, TUBBY LIKE PROTEIN 11  gene AtTLP11  function Member of TLP family  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function phosphoric diester hydrolase activity|GO:0008081||ISS  product AtTLP11 (TUBBY LIKE PROTEIN 11); phosphoric diester hydrolase/ transcription factor  note TUBBY LIKE PROTEIN 11 (AtTLP11); FUNCTIONS IN: transcription factor activity, phosphoric diester hydrolase activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: ATTLP9 (TUBBY-LIKE PROTEIN 9); phosphoric diester hydrolase/ protein binding / transcription factor (TAIR:AT3G06380.1); Has 672 Blast hits to 672 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 293; Fungi - 2; Plants - 301; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT5G18680.1p  transcript_id AT5G18680.1  protein_id AT5G18680.1p  transcript_id AT5G18680.1  
At5g18690	chr5:006233776	0.0	C/6233776-6234126	AT5G18690.1  CDS  gene_syn AGP25, ARABIDOPSIS THALIANA ARABINOGALACTAN PROTEINS 25, ARABINOGALACTAN PROTEINS 25, ATAGP25, T1A4.70, T1A4_70  gene AGP25  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product AGP25 (ARABINOGALACTAN PROTEINS 25)  note ARABINOGALACTAN PROTEINS 25 (AGP25); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 336 Blast hits to 235 proteins in 54 species: Archae - 0; Bacteria - 20; Metazoa - 66; Fungi - 23; Plants - 113; Viruses - 54; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT5G18690.1p  transcript_id AT5G18690.1  protein_id AT5G18690.1p  transcript_id AT5G18690.1  
At5g18700	chr5:006240686	0.0	C/6240686-6240733,6240520-6240609,6240242-6240294,6240081-6240156,6239945-6240006,6239757-6239835,6239611-6239667,6237867-6239498,6236843-6237712,6235387-6236520	AT5G18700.1  CDS  gene_syn EMB3013, T1A4.80, T1A4_80, embryo defective 3013  gene EMB3013  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function binding|GO:0005488||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function kinase activity|GO:0016301||ISS  product EMB3013 (embryo defective 3013); ATP binding / binding / kinase/ protein kinase/ protein serine/threonine kinase  note embryo defective 3013 (EMB3013); FUNCTIONS IN: protein serine/threonine kinase activity, binding, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Serine/threonine protein kinase (InterPro:IPR002290), Armadillo-like helical (InterPro:IPR011989), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G33940.2); Has 97854 Blast hits to 96127 proteins in 3359 species: Archae - 102; Bacteria - 8742; Metazoa - 42299; Fungi - 8727; Plants - 18730; Viruses - 676; Other Eukaryotes - 18578 (source: NCBI BLink).  protein_id AT5G18700.1p  transcript_id AT5G18700.1  protein_id AT5G18700.1p  transcript_id AT5G18700.1  
At5g18710	chr5:006242789	0.0	W/6242789-6243479	AT5G18710.1  CDS  gene_syn T1A4.90, T1A4_90  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18730.1); Has 301 Blast hits to 134 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 301; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G18710.1p  transcript_id AT5G18710.1  protein_id AT5G18710.1p  transcript_id AT5G18710.1  
At5g18720	chr5:006245141	0.0	W/6245141-6246169	AT5G18720.1  CDS  gene_syn T1A4.100, T1A4_100  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18730.1); Has 294 Blast hits to 137 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 294; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G18720.1p  transcript_id AT5G18720.1  protein_id AT5G18720.1p  transcript_id AT5G18720.1  
At5g18720	chr5:006245141	0.0	W/6245141-6246169	AT5G18720.2  CDS  gene_syn T1A4.100, T1A4_100  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18730.1).  protein_id AT5G18720.2p  transcript_id AT5G18720.2  protein_id AT5G18720.2p  transcript_id AT5G18720.2  
At5g18730	chr5:006247611	0.0	W/6247611-6249197	AT5G18730.1  CDS  gene_syn F17K4.3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18740.1); Has 299 Blast hits to 137 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 299; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G18730.1p  transcript_id AT5G18730.1  protein_id AT5G18730.1p  transcript_id AT5G18730.1  
At5g18740	chr5:006250060	0.0	W/6250060-6251352	AT5G18740.1  CDS  gene_syn F17K4.1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18730.1); Has 191 Blast hits to 135 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 191; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G18740.1p  transcript_id AT5G18740.1  protein_id AT5G18740.1p  transcript_id AT5G18740.1  
At5g18748	chr5:006254560	0.0	C/6254560-6254769	AT5G18748.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G18748.1p  transcript_id AT5G18748.1  protein_id AT5G18748.1p  transcript_id AT5G18748.1  
At5g18750	chr5:006255177	0.0	W/6255177-6257831	AT5G18750.1  CDS  gene_syn F17K4.2  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18730.1); Has 14167 Blast hits to 13871 proteins in 1874 species: Archae - 99; Bacteria - 4629; Metazoa - 3025; Fungi - 1211; Plants - 1256; Viruses - 16; Other Eukaryotes - 3931 (source: NCBI BLink).  protein_id AT5G18750.1p  transcript_id AT5G18750.1  protein_id AT5G18750.1p  transcript_id AT5G18750.1  
At5g18755	chr5:006258145	0.0	W/6258145-6258216	AT5G18755.1  tRNA  gene_syn 67647.TRNA-PRO-1, 67648.TRNA-PRO-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT5G18755.1  
At5g18760	chr5:006260736	0.0	C/6260736-6260828,6260038-6260376,6259831-6259942,6259325-6259637,6259157-6259229,6258925-6259015,6258747-6258826,6258508-6258642	AT5G18760.1  CDS  gene_syn F17K4.10, F17K4_10  go_component chloroplast|GO:0009507||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G06330.1); Has 907 Blast hits to 907 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 439; Fungi - 68; Plants - 331; Viruses - 4; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT5G18760.1p  transcript_id AT5G18760.1  protein_id AT5G18760.1p  transcript_id AT5G18760.1  
At5g18770	chr5:006261426	0.0	W/6261426-6261457,6261581-6262502,6262598-6262747,6262831-6263172	AT5G18770.1  CDS  gene_syn F17K4.20, F17K4_20  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G18780.1); Has 1198 Blast hits to 1165 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1198; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G18770.1p  transcript_id AT5G18770.1  protein_id AT5G18770.1p  transcript_id AT5G18770.1  
At5g18780	chr5:006264610	0.0	W/6264610-6265506,6265587-6265730,6265813-6266097	AT5G18780.1  CDS  gene_syn F17K4.30, F17K4_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G18770.1); Has 1331 Blast hits to 1305 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1323; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G18780.1p  transcript_id AT5G18780.1  protein_id AT5G18780.1p  transcript_id AT5G18780.1  
At5g18790	chr5:006266324	0.0	C/6266324-6266500	AT5G18790.1  CDS  gene_syn F17K4.40  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L33 family protein  note ribosomal protein L33 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; CONTAINS InterPro DOMAIN/s: Ribosomal protein L33 (InterPro:IPR001705); BEST Arabidopsis thaliana protein match is: ribosomal protein L33 family protein (TAIR:AT3G06320.1); Has 1786 Blast hits to 1786 proteins in 750 species: Archae - 0; Bacteria - 1570; Metazoa - 22; Fungi - 13; Plants - 30; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).  protein_id AT5G18790.1p  transcript_id AT5G18790.1  protein_id AT5G18790.1p  transcript_id AT5G18790.1  
At5g18800	chr5:006267304	0.0	W/6267304-6267491,6268261-6268393	AT5G18800.1  CDS  gene_syn F17K4.50, F17K4_50  go_process mitochondrial electron transport, NADH to ubiquinone|GO:0006120||ISS  go_function NADH dehydrogenase (ubiquinone) activity|GO:0008137||ISS  product NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein  note NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein; FUNCTIONS IN: NADH dehydrogenase (ubiquinone) activity; INVOLVED IN: mitochondrial electron transport, NADH to ubiquinone; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625); BEST Arabidopsis thaliana protein match is: NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein (TAIR:AT3G06310.1); Has 235 Blast hits to 235 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 73; Plants - 35; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G18800.1p  transcript_id AT5G18800.1  protein_id AT5G18800.1p  transcript_id AT5G18800.1  
At5g18800	chr5:006267304	0.0	W/6267304-6267491,6268261-6268393	AT5G18800.2  CDS  gene_syn F17K4.50, F17K4_50  go_process mitochondrial electron transport, NADH to ubiquinone|GO:0006120||ISS  go_function NADH dehydrogenase (ubiquinone) activity|GO:0008137||ISS  product NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein  note NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein; FUNCTIONS IN: NADH dehydrogenase (ubiquinone) activity; INVOLVED IN: mitochondrial electron transport, NADH to ubiquinone; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625); BEST Arabidopsis thaliana protein match is: NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein (TAIR:AT3G06310.1); Has 235 Blast hits to 235 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 73; Plants - 35; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G18800.2p  transcript_id AT5G18800.2  protein_id AT5G18800.2p  transcript_id AT5G18800.2  
At5g18810	chr5:006270983	0.0	C/6270983-6271158,6270802-6270879,6270427-6270591,6270263-6270321,6270100-6270139,6269085-6269270,6268925-6268931	AT5G18810.1  CDS  gene_syn F17K4.60, F17K4_60, SCL28  gene SCL28  function encodes an SC35-like splicing factor of 28 kD localized to the nuclear specks.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component nuclear speck|GO:0016607|15133128|IDA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|12176998|TAS  go_function RNA binding|GO:0003723||ISS  product SCL28; RNA binding / nucleic acid binding / nucleotide binding  note SCL28; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nuclear speck, nucleus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: SCL30a; RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT3G13570.1); Has 12784 Blast hits to 10945 proteins in 489 species: Archae - 2; Bacteria - 549; Metazoa - 7516; Fungi - 1607; Plants - 1821; Viruses - 36; Other Eukaryotes - 1253 (source: NCBI BLink).  protein_id AT5G18810.1p  transcript_id AT5G18810.1  protein_id AT5G18810.1p  transcript_id AT5G18810.1  
At5g18820	chr5:006271549	0.0	W/6271549-6271596,6271673-6271823,6271954-6272075,6272196-6272403,6272487-6272632,6272755-6273061,6273143-6273393,6273555-6273758,6273863-6274153	AT5G18820.1  CDS  gene_syn EMB3007, F17K4.70, F17K4_70, embryo defective 3007  gene EMB3007  go_component chloroplast|GO:0009507||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product EMB3007 (embryo defective 3007); ATP binding / protein binding  note embryo defective 3007 (EMB3007); FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: CPN60A (CHAPERONIN-60ALPHA); ATP binding / protein binding (TAIR:AT2G28000.1); Has 24283 Blast hits to 24268 proteins in 5117 species: Archae - 390; Bacteria - 14011; Metazoa - 1422; Fungi - 957; Plants - 438; Viruses - 2; Other Eukaryotes - 7063 (source: NCBI BLink).  protein_id AT5G18820.1p  transcript_id AT5G18820.1  protein_id AT5G18820.1p  transcript_id AT5G18820.1  
At5g18830	chr5:006276116	0.0	W/6276116-6276666,6277063-6277235,6277387-6277613,6277687-6277761,6277864-6277971,6278288-6278405,6278522-6278657,6278883-6279036,6279111-6279593,6279925-6280227	AT5G18830.2  CDS  gene_syn F17K4.80, F17K4_80, SPL7, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 7  gene SPL7  function Encodes a member of the Squamosa Binding Protein family of transcriptional regulators. SPL7 is expressed highly in roots and appears to play a role in copper homeostasis. Mutants are hypersensitive to copper deficient conditions and display a retarded growth phenotype. SPL7 binds to the promoter of the copper responsive miRNAs miR398b and miR389c.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process regulation of transcription|GO:0045449|19122104|IDA  go_process copper ion homeostasis|GO:0055070|19122104|IMP  go_function DNA binding|GO:0003677|19122104|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product SPL7 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 7); DNA binding / transcription factor  note SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 7 (SPL7); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: copper ion homeostasis, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: SPL1 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 1); DNA binding / transcription factor (TAIR:AT2G47070.1); Has 558 Blast hits to 522 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 555; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G18830.2p  transcript_id AT5G18830.2  protein_id AT5G18830.2p  transcript_id AT5G18830.2  
At5g18830	chr5:006276116	0.0	W/6276116-6276666,6277063-6277235,6277387-6277613,6277687-6277761,6277864-6277971,6278288-6278405,6278522-6278657,6278883-6279036,6279111-6279671,6279925-6280227	AT5G18830.1  CDS  gene_syn F17K4.80, F17K4_80, SPL7, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 7  gene SPL7  function Encodes a member of the Squamosa Binding Protein family of transcriptional regulators. SPL7 is expressed highly in roots and appears to play a role in copper homeostasis. Mutants are hypersensitive to copper deficient conditions and display a retarded growth phenotype. SPL7 binds to the promoter of the copper responsive miRNAs miR398b and miR389c.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process regulation of transcription|GO:0045449|19122104|IDA  go_process copper ion homeostasis|GO:0055070|19122104|IMP  go_function DNA binding|GO:0003677|19122104|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product SPL7 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 7); DNA binding / transcription factor  note SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 7 (SPL7); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: copper ion homeostasis, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: SPL1 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 1); DNA binding / transcription factor (TAIR:AT2G47070.1); Has 558 Blast hits to 522 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 555; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G18830.1p  transcript_id AT5G18830.1  protein_id AT5G18830.1p  transcript_id AT5G18830.1  
At5g18840	chr5:006282954	0.0	W/6282954-6283136,6283264-6283326,6283839-6283928,6284024-6284083,6284186-6284251,6284438-6284579,6284662-6284726,6284815-6284988,6285080-6285164,6285250-6285296,6285384-6285446,6285524-6285583,6285688-6285741,6285860-6285919,6286065-6286179,6286278-6286399	AT5G18840.1  CDS  gene_syn F17K4.90, F17K4_90  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product sugar transporter, putative  note sugar transporter, putative; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter, putative (TAIR:AT2G48020.2); Has 17758 Blast hits to 17331 proteins in 1181 species: Archae - 248; Bacteria - 6545; Metazoa - 4355; Fungi - 4214; Plants - 1414; Viruses - 0; Other Eukaryotes - 982 (source: NCBI BLink).  protein_id AT5G18840.1p  transcript_id AT5G18840.1  protein_id AT5G18840.1p  transcript_id AT5G18840.1  
At5g18850	chr5:006286896	0.0	W/6286896-6287055,6287133-6287272	AT5G18850.1  CDS  gene_syn F17K4.100, F17K4_100  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 8 Blast hits to 8 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G18850.1p  transcript_id AT5G18850.1  protein_id AT5G18850.1p  transcript_id AT5G18850.1  
At5g18860	chr5:006291023	0.0	W/6291023-6291208,6291286-6291465,6291559-6291669,6292446-6292784,6292941-6293120,6293209-6293508,6293601-6293723,6293833-6294030,6294203-6294456,6294565-6294769,6294850-6295155,6295291-6295581	AT5G18860.1  CDS  gene_syn F17K4.110, F17K4_110  go_component cell wall|GO:0005618|14595688|IDA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product inosine-uridine preferring nucleoside hydrolase family protein  note inosine-uridine preferring nucleoside hydrolase family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; CONTAINS InterPro DOMAIN/s: Inosine/uridine-preferring nucleoside hydrolase (InterPro:IPR001910); BEST Arabidopsis thaliana protein match is: inosine-uridine preferring nucleoside hydrolase family protein (TAIR:AT5G18890.1); Has 3818 Blast hits to 2401 proteins in 580 species: Archae - 30; Bacteria - 2470; Metazoa - 138; Fungi - 117; Plants - 124; Viruses - 0; Other Eukaryotes - 939 (source: NCBI BLink).  protein_id AT5G18860.1p  transcript_id AT5G18860.1  protein_id AT5G18860.1p  transcript_id AT5G18860.1  
At5g18870	chr5:006298386	0.0	W/6298386-6298562,6298656-6298835,6299419-6299523,6299875-6300162,6300263-6300289	AT5G18870.1  CDS  gene_syn F17K4.120, F17K4_120  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product inosine-uridine preferring nucleoside hydrolase-related  note inosine-uridine preferring nucleoside hydrolase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Inosine/uridine-preferring nucleoside hydrolase (InterPro:IPR001910); BEST Arabidopsis thaliana protein match is: inosine-uridine preferring nucleoside hydrolase family protein (TAIR:AT5G18860.1); Has 1702 Blast hits to 1687 proteins in 462 species: Archae - 12; Bacteria - 1134; Metazoa - 67; Fungi - 64; Plants - 89; Viruses - 0; Other Eukaryotes - 336 (source: NCBI BLink).  protein_id AT5G18870.1p  transcript_id AT5G18870.1  protein_id AT5G18870.1p  transcript_id AT5G18870.1  
At5g18880	chr5:006300535	0.0	C/6300535-6301422	AT5G18880.1  CDS  gene_syn F17K4.130, F17K4_130  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G04650.1); Has 393 Blast hits to 389 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 393; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G18880.1p  transcript_id AT5G18880.1  protein_id AT5G18880.1p  transcript_id AT5G18880.1  
At5g18890	chr5:006301652	0.0	W/6301652-6301903,6301987-6302109,6302452-6302652,6302791-6303243,6303327-6303629,6303768-6304088	AT5G18890.1  CDS  gene_syn F17K4.140, F17K4_140  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product inosine-uridine preferring nucleoside hydrolase family protein  note inosine-uridine preferring nucleoside hydrolase family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Inosine/uridine-preferring nucleoside hydrolase (InterPro:IPR001910); BEST Arabidopsis thaliana protein match is: inosine-uridine preferring nucleoside hydrolase family protein (TAIR:AT5G18860.1); Has 1766 Blast hits to 1751 proteins in 464 species: Archae - 18; Bacteria - 1102; Metazoa - 75; Fungi - 28; Plants - 84; Viruses - 0; Other Eukaryotes - 459 (source: NCBI BLink).  protein_id AT5G18890.1p  transcript_id AT5G18890.1  protein_id AT5G18890.1p  transcript_id AT5G18890.1  
At5g18900	chr5:006306033	0.0	C/6306033-6306166,6305879-6305936,6305672-6305776,6305252-6305309,6304943-6305118,6304786-6304855,6304409-6304704	AT5G18900.1  CDS  gene_syn F17K4.150, F17K4_150  go_process protein metabolic process|GO:0019538||IEA  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process peptidyl-proline hydroxylation to 4-hydroxy-L-proline|GO:0018401||ISS  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding; INVOLVED IN: protein metabolic process, peptidyl-proline hydroxylation to 4-hydroxy-L-proline; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), 2OG-Fe(II) oxygenase (InterPro:IPR005123), Metridin-like ShK toxin (InterPro:IPR003582); BEST Arabidopsis thaliana protein match is: AT-P4H-2 (A. THALIANA P4H ISOFORM 2); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors / procollagen-proline 4-dioxygenase (TAIR:AT3G06300.1); Has 1919 Blast hits to 1907 proteins in 225 species: Archae - 0; Bacteria - 196; Metazoa - 982; Fungi - 69; Plants - 224; Viruses - 14; Other Eukaryotes - 434 (source: NCBI BLink).  protein_id AT5G18900.1p  transcript_id AT5G18900.1  protein_id AT5G18900.1p  transcript_id AT5G18900.1  
At5g18910	chr5:006309326	0.0	C/6309326-6309396,6309116-6309204,6308583-6309005,6308233-6308484,6307982-6308136,6307775-6307854,6307534-6307669,6307246-6307395,6306994-6307173	AT5G18910.1  CDS  gene_syn F17K4.160, F17K4_160  go_component peroxisome|GO:0005777|12154131|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: peroxisome; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: RBK2 (Rop Binding protein Kinases 2); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT3G05140.1); Has 81277 Blast hits to 80437 proteins in 2969 species: Archae - 51; Bacteria - 7233; Metazoa - 36119; Fungi - 6389; Plants - 17511; Viruses - 384; Other Eukaryotes - 13590 (source: NCBI BLink).  protein_id AT5G18910.1p  transcript_id AT5G18910.1  protein_id AT5G18910.1p  transcript_id AT5G18910.1  
At5g18920	chr5:006310095	0.0	W/6310095-6310235,6310320-6310365,6310577-6310623	AT5G18920.1  CDS  gene_syn F17K4.170, F17K4_170  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; Has 11 Blast hits to 11 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G18920.1p  transcript_id AT5G18920.1  protein_id AT5G18920.1p  transcript_id AT5G18920.1  
At5g18930	chr5:006312172	0.0	C/6312172-6313215	AT5G18930.1  CDS  gene_syn BUD2, BUSHY AND DWARF 2, F17K4.180, F17K4_180, SAMDC4  gene BUD2  go_process polyamine biosynthetic process|GO:0006596||IEA  go_process spermine biosynthetic process|GO:0006597||IEA  go_process spermidine biosynthetic process|GO:0008295||IEA  go_function adenosylmethionine decarboxylase activity|GO:0004014||IEA  go_component cellular_component|GO:0005575||ND  go_function adenosylmethionine decarboxylase activity|GO:0004014||ISS  product BUD2 (BUSHY AND DWARF 2); adenosylmethionine decarboxylase  note BUSHY AND DWARF 2 (BUD2); FUNCTIONS IN: adenosylmethionine decarboxylase activity; INVOLVED IN: spermidine biosynthetic process, spermine biosynthetic process, polyamine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine decarboxylase, core (InterPro:IPR016067), S-adenosylmethionine decarboxylase (InterPro:IPR001985), S-adenosylmethionine decarboxylase, conserved site (InterPro:IPR018166), S-adenosylmethionine decarboxylase subgroup (InterPro:IPR018167); BEST Arabidopsis thaliana protein match is: SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE); adenosylmethionine decarboxylase (TAIR:AT3G02470.4); Has 722 Blast hits to 704 proteins in 203 species: Archae - 0; Bacteria - 52; Metazoa - 167; Fungi - 100; Plants - 340; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT5G18930.1p  transcript_id AT5G18930.1  protein_id AT5G18930.1p  transcript_id AT5G18930.1  
At5g18940	chr5:006325972	0.0	W/6325972-6326094,6326291-6326455,6326537-6326655,6326774-6326848,6326939-6327032,6327119-6327178,6327326-6327391,6327478-6327576,6327665-6327709,6327819-6327915,6328009-6328097	AT5G18940.2  CDS  gene_syn F17K4.190, F17K4_190  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product Mo25 family protein  note Mo25 family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mo25-like (InterPro:IPR013878), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT5G47540.1); Has 391 Blast hits to 391 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 181; Fungi - 88; Plants - 79; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT5G18940.2p  transcript_id AT5G18940.2  protein_id AT5G18940.2p  transcript_id AT5G18940.2  
At5g18940	chr5:006325972	0.0	W/6325972-6326094,6326291-6326455,6326537-6326655,6326774-6326848,6326939-6327032,6327119-6327178,6327326-6327391,6327478-6327576,6327665-6327709,6327819-6327921,6328009-6328097	AT5G18940.1  CDS  gene_syn F17K4.190, F17K4_190  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product Mo25 family protein  note Mo25 family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mo25-like (InterPro:IPR013878), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT5G47540.1); Has 393 Blast hits to 393 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 181; Fungi - 88; Plants - 79; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT5G18940.1p  transcript_id AT5G18940.1  protein_id AT5G18940.1p  transcript_id AT5G18940.1  
At5g18950	chr5:006328519	0.0	C/6328519-6329970	AT5G18950.1  CDS  gene_syn F17K4.200, F17K4_200  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G62670.1); Has 16473 Blast hits to 5355 proteins in 166 species: Archae - 1; Bacteria - 12; Metazoa - 242; Fungi - 233; Plants - 15557; Viruses - 0; Other Eukaryotes - 428 (source: NCBI BLink).  protein_id AT5G18950.1p  transcript_id AT5G18950.1  protein_id AT5G18950.1p  transcript_id AT5G18950.1  
At5g18960	chr5:006330556	0.0	W/6330556-6330563,6330713-6333071	AT5G18960.1  CDS  gene_syn F17K4.210, F17K4_210, FAR1-related sequence 12, FRS12  gene FRS12  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process response to red or far red light|GO:0009639||ISS  product FRS12 (FAR1-related sequence 12); zinc ion binding  note FAR1-related sequence 12 (FRS12); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FRS7 (FAR1-related sequence 7); zinc ion binding (TAIR:AT3G06250.1); Has 1154 Blast hits to 697 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 34; Plants - 1119; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G18960.1p  transcript_id AT5G18960.1  protein_id AT5G18960.1p  transcript_id AT5G18960.1  
At5g18970	chr5:006334413	0.0	C/6334413-6334539,6334103-6334322,6333947-6333992,6333714-6333836	AT5G18970.1  CDS  gene_syn F17K4.4  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product AWPM-19-like membrane family protein  note AWPM-19-like membrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AWPM-19-like (InterPro:IPR008390); BEST Arabidopsis thaliana protein match is: AWPM-19-like membrane family protein (TAIR:AT1G29520.1); Has 99 Blast hits to 99 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G18970.1p  transcript_id AT5G18970.1  protein_id AT5G18970.1p  transcript_id AT5G18970.1  
At5g18980	chr5:006337893	0.0	C/6337893-6337943,6337171-6337637,6336464-6337099,6335450-6336374,6334944-6335372	AT5G18980.1  CDS  gene_syn T16G12.20, T16G12_20  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT3G06210.1); Has 298 Blast hits to 213 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G18980.1p  transcript_id AT5G18980.1  protein_id AT5G18980.1p  transcript_id AT5G18980.1  
At5g18990	chr5:006340076	0.0	W/6340076-6340275,6340397-6340556,6340648-6340866,6341201-6341614	AT5G18990.1  CDS  gene_syn T16G12.30, T16G12_30  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT3G24130.1); Has 1214 Blast hits to 1183 proteins in 175 species: Archae - 0; Bacteria - 249; Metazoa - 1; Fungi - 132; Plants - 832; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G18990.1p  transcript_id AT5G18990.1  protein_id AT5G18990.1p  transcript_id AT5G18990.1  
At5g19000	chr5:006342563	0.0	W/6342563-6342978,6343127-6343475,6344089-6344365,6344460-6344641	AT5G19000.1  CDS  gene_syn ATBPM1, BTB-POZ and MATH domain 1, T16G12.40, T16G12_40  gene ATBPM1  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515|15618422|IPI  go_function protein binding|GO:0005515||ISS  product ATBPM1 (BTB-POZ and MATH domain 1); protein binding  note BTB-POZ and MATH domain 1 (ATBPM1); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: shoot, male gametophyte, flower, root, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BPM2 (BTB-POZ AND MATH DOMAIN 2); protein binding (TAIR:AT3G06190.1); Has 4702 Blast hits to 4630 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 3617; Fungi - 41; Plants - 884; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).  protein_id AT5G19000.1p  transcript_id AT5G19000.1  protein_id AT5G19000.1p  transcript_id AT5G19000.1  
At5g19010	chr5:006347653	0.0	C/6347653-6347676,6347088-6347496,6346872-6346999,6346720-6346779,6346428-6346577,6346203-6346358,6345908-6346119,6345719-6345823,6345464-6345636,6345096-6345382	AT5G19010.1  CDS  gene_syn MPK16, T16G12.50, T16G12_50  gene MPK16  function member of MAP Kinase  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process signal transduction|GO:0007165|12119167|IC  go_function MAP kinase activity|GO:0004707|11544109|ISS  go_function MAP kinase activity|GO:0004707|12119167|ISS  product MPK16; MAP kinase  note MPK16; FUNCTIONS IN: MAP kinase activity; INVOLVED IN: signal transduction; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: MPK9 (MAP KINASE 9); MAP kinase (TAIR:AT3G18040.1); Has 90089 Blast hits to 89094 proteins in 2866 species: Archae - 49; Bacteria - 7854; Metazoa - 39062; Fungi - 8225; Plants - 17357; Viruses - 546; Other Eukaryotes - 16996 (source: NCBI BLink).  protein_id AT5G19010.1p  transcript_id AT5G19010.1  protein_id AT5G19010.1p  transcript_id AT5G19010.1  
At5g19015	chr5:006349762	0.0	C/6349762-6350949	AT5G19015.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 8.7e-16 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At5g19020	chr5:006356350	0.0	C/6356350-6357083,6356172-6356256,6352771-6354771	AT5G19020.1  CDS  gene_syn T16G12.60, T16G12_60  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 16806 Blast hits to 5030 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 61; Fungi - 55; Plants - 16323; Viruses - 0; Other Eukaryotes - 367 (source: NCBI BLink).  protein_id AT5G19020.1p  transcript_id AT5G19020.1  protein_id AT5G19020.1p  transcript_id AT5G19020.1  
At5g19030	chr5:006358835	0.0	C/6358835-6359024,6358681-6358749,6357771-6357877,6357570-6357584	AT5G19030.2  CDS  gene_syn T16G12.70, T16G12_70  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RPS19 (RIBOSOMAL PROTEIN S19); RNA binding (TAIR:AT5G47320.1); Has 10141 Blast hits to 7493 proteins in 453 species: Archae - 8; Bacteria - 417; Metazoa - 6232; Fungi - 917; Plants - 1612; Viruses - 0; Other Eukaryotes - 955 (source: NCBI BLink).  protein_id AT5G19030.2p  transcript_id AT5G19030.2  protein_id AT5G19030.2p  transcript_id AT5G19030.2  
At5g19030	chr5:006358835	0.0	C/6358835-6359024,6358681-6358749,6357771-6357896,6357591-6357598	AT5G19030.3  CDS  gene_syn T16G12.70, T16G12_70  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G19030.3p  transcript_id AT5G19030.3  protein_id AT5G19030.3p  transcript_id AT5G19030.3  
At5g19030	chr5:006358835	0.0	C/6358835-6359081,6358681-6358749,6357771-6357877,6357503-6357598	AT5G19030.1  CDS  gene_syn T16G12.70, T16G12_70  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT4G20030.1); Has 14100 Blast hits to 10545 proteins in 545 species: Archae - 10; Bacteria - 718; Metazoa - 8125; Fungi - 1499; Plants - 2264; Viruses - 0; Other Eukaryotes - 1484 (source: NCBI BLink).  protein_id AT5G19030.1p  transcript_id AT5G19030.1  protein_id AT5G19030.1p  transcript_id AT5G19030.1  
At5g19040	chr5:006362389	0.0	C/6362389-6363381	AT5G19040.1  CDS  gene_syn ATIPT5, IPT5, T16G12.80, T16G12_80  gene IPT5  function Encodes cytokinin synthase.  go_function tRNA isopentenyltransferase activity|GO:0004811||IEA  go_function ATP binding|GO:0005524||IEA  go_process cytokinin biosynthetic process|GO:0009691|17062755|IGI  go_function transferase activity, transferring alkyl or aryl (other than methyl) groups|GO:0016765||ISS  product IPT5; ATP binding / tRNA isopentenyltransferase/ transferase, transferring alkyl or aryl (other than methyl) groups  note IPT5; FUNCTIONS IN: transferase activity, transferring alkyl or aryl (other than methyl) groups, tRNA isopentenyltransferase activity, ATP binding; INVOLVED IN: cytokinin biosynthetic process; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: tRNA isopentenyltransferase (InterPro:IPR002627); BEST Arabidopsis thaliana protein match is: ATIPT7; ATP binding / tRNA isopentenyltransferase/ transferase, transferring alkyl or aryl (other than methyl) groups (TAIR:AT3G23630.1); Has 5401 Blast hits to 5055 proteins in 1452 species: Archae - 0; Bacteria - 2877; Metazoa - 156; Fungi - 146; Plants - 189; Viruses - 0; Other Eukaryotes - 2033 (source: NCBI BLink).  protein_id AT5G19040.1p  transcript_id AT5G19040.1  protein_id AT5G19040.1p  transcript_id AT5G19040.1  
At5g19050	chr5:006369307	0.0	W/6369307-6369582,6369997-6370073,6370208-6370313,6370435-6370527,6370618-6370683,6370822-6370967,6371073-6371181,6371300-6371364,6371579-6371726	AT5G19050.1  CDS  gene_syn T16G12.90, T16G12_90  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1749 (InterPro:IPR013744); Has 423 Blast hits to 292 proteins in 96 species: Archae - 0; Bacteria - 91; Metazoa - 43; Fungi - 150; Plants - 25; Viruses - 6; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT5G19050.1p  transcript_id AT5G19050.1  protein_id AT5G19050.1p  transcript_id AT5G19050.1  
At5g19060	chr5:006373011	0.0	W/6373011-6374666	AT5G19060.1  CDS  gene_syn T16G12.100, T16G12_100  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Immunoglobulin-like fold (InterPro:IPR013783); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G06150.1); Has 19 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G19060.1p  transcript_id AT5G19060.1  protein_id AT5G19060.1p  transcript_id AT5G19060.1  
At5g19070	chr5:006375569	0.0	W/6375569-6375664,6375937-6375998,6376187-6376241,6376373-6376471,6376597-6376683,6376763-6376879,6376973-6377065,6377146-6377176,6377268-6377470	AT5G19070.1  CDS  gene_syn T16G12.110, T16G12_110  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03260.1); Has 3029 Blast hits to 3029 proteins in 693 species: Archae - 10; Bacteria - 1724; Metazoa - 229; Fungi - 74; Plants - 161; Viruses - 0; Other Eukaryotes - 831 (source: NCBI BLink).  protein_id AT5G19070.1p  transcript_id AT5G19070.1  protein_id AT5G19070.1p  transcript_id AT5G19070.1  
At5g19080	chr5:006378400	0.0	W/6378400-6378917,6379420-6379918,6380168-6380287	AT5G19080.1  CDS  gene_syn T16G12.120, T16G12_120  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G06140.1); Has 6084 Blast hits to 4789 proteins in 327 species: Archae - 2; Bacteria - 56; Metazoa - 2442; Fungi - 735; Plants - 1706; Viruses - 186; Other Eukaryotes - 957 (source: NCBI BLink).  protein_id AT5G19080.1p  transcript_id AT5G19080.1  protein_id AT5G19080.1p  transcript_id AT5G19080.1  
At5g19090	chr5:006387910	0.0	W/6387910-6387939,6388030-6388105,6388198-6388965,6389332-6389855	AT5G19090.2  CDS  gene_syn T16G12.130, T16G12_130  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT3G06130.1); Has 47369 Blast hits to 17150 proteins in 946 species: Archae - 70; Bacteria - 9997; Metazoa - 17372; Fungi - 3090; Plants - 9105; Viruses - 939; Other Eukaryotes - 6796 (source: NCBI BLink).  protein_id AT5G19090.2p  transcript_id AT5G19090.2  protein_id AT5G19090.2p  transcript_id AT5G19090.2  
At5g19090	chr5:006387910	0.0	W/6387910-6387939,6388030-6388105,6388198-6388968,6389200-6389202,6389338-6389855	AT5G19090.3  CDS  gene_syn T16G12.130, T16G12_130  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT3G06130.1).  protein_id AT5G19090.3p  transcript_id AT5G19090.3  protein_id AT5G19090.3p  transcript_id AT5G19090.3  
At5g19090	chr5:006387910	0.0	W/6387910-6387939,6388030-6388105,6388198-6389855	AT5G19090.1  CDS  gene_syn T16G12.130, T16G12_130  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT3G06130.1); Has 174112 Blast hits to 47721 proteins in 1906 species: Archae - 322; Bacteria - 36869; Metazoa - 74445; Fungi - 11471; Plants - 19768; Viruses - 2637; Other Eukaryotes - 28600 (source: NCBI BLink).  protein_id AT5G19090.1p  transcript_id AT5G19090.1  protein_id AT5G19090.1p  transcript_id AT5G19090.1  
At5g19095	chr5:006401239	0.0	W/6401239-6401309	AT5G19095.1  tRNA  gene_syn 67649.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: GCC)  transcript_id AT5G19095.1  
At5g19097	chr5:006403277	0.0	C/6403277-6407608	AT5G19097.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.4e-284 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At5g19100	chr5:006408242	0.0	C/6408242-6409417	AT5G19100.1  CDS  gene_syn T16G12.140, T16G12_140  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  product extracellular dermal glycoprotein-related / EDGP-related  note extracellular dermal glycoprotein-related / EDGP-related; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: extracellular dermal glycoprotein, putative / EDGP, putative (TAIR:AT1G03220.1); Has 392 Blast hits to 392 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 392; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G19100.1p  transcript_id AT5G19100.1  protein_id AT5G19100.1p  transcript_id AT5G19100.1  
At5g19110	chr5:006412316	0.0	C/6412316-6413170,6411720-6412082	AT5G19110.1  CDS  gene_syn T24G5.10, T24G5_10  go_component endomembrane system|GO:0012505||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  product extracellular dermal glycoprotein-related / EDGP-related  note extracellular dermal glycoprotein-related / EDGP-related; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis, N-terminal protein myristoylation; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, leaf apex, hypocotyl, root, leaf; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: extracellular dermal glycoprotein-related / EDGP-related (TAIR:AT5G19100.1); Has 637 Blast hits to 637 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 637; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G19110.1p  transcript_id AT5G19110.1  protein_id AT5G19110.1p  transcript_id AT5G19110.1  
At5g19120	chr5:006414585	0.0	W/6414585-6415745	AT5G19120.1  CDS  gene_syn T24G5.20, T24G5_20  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  product aspartic-type endopeptidase  note aspartic-type endopeptidase; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: extracellular dermal glycoprotein, putative / EDGP, putative (TAIR:AT1G03220.1); Has 701 Blast hits to 699 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 699; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G19120.1p  transcript_id AT5G19120.1  protein_id AT5G19120.1p  transcript_id AT5G19120.1  
At5g19130	chr5:006418872	0.0	C/6418872-6418993,6418684-6418775,6418388-6418487,6417444-6418251,6417173-6417306,6416128-6416971	AT5G19130.1  CDS  gene_syn T24G5.30, T24G5_30  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_function GPI-anchor transamidase activity|GO:0003923||ISS  product GPI transamidase component family protein / Gaa1-like family protein  note GPI transamidase component family protein / Gaa1-like family protein; FUNCTIONS IN: GPI-anchor transamidase activity; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosylphosphatidylinositol:protein transamidase complex, GAA1 component (InterPro:IPR017063), Gaa1-like, GPI transamidase component (InterPro:IPR007246); Has 220 Blast hits to 219 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 107; Fungi - 81; Plants - 16; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT5G19130.1p  transcript_id AT5G19130.1  protein_id AT5G19130.1p  transcript_id AT5G19130.1  
At5g19130	chr5:006418872	0.0	C/6418872-6418993,6418684-6418775,6418392-6418487,6417444-6418246,6417173-6417306,6416128-6416971	AT5G19130.2  CDS  gene_syn T24G5.30, T24G5_30  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_function GPI-anchor transamidase activity|GO:0003923||ISS  product GPI transamidase component family protein / Gaa1-like family protein  note GPI transamidase component family protein / Gaa1-like family protein; FUNCTIONS IN: GPI-anchor transamidase activity; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosylphosphatidylinositol:protein transamidase complex, GAA1 component (InterPro:IPR017063), Gaa1-like, GPI transamidase component (InterPro:IPR007246); Has 220 Blast hits to 219 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 107; Fungi - 81; Plants - 16; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT5G19130.2p  transcript_id AT5G19130.2  protein_id AT5G19130.2p  transcript_id AT5G19130.2  
At5g19140	chr5:006423398	0.0	W/6423398-6423600,6425010-6425250,6425343-6425427,6425552-6425661,6425756-6425785	AT5G19140.2  CDS  gene_syn AILP1, ATAILP1, T24G5.40, T24G5_40  gene AILP1  go_component plasma membrane|GO:0005886|17644812|IDA  go_process response to auxin stimulus|GO:0009733||ISS  go_process response to aluminum ion|GO:0010044||ISS  go_function molecular_function|GO:0003674||ND  product AILP1  note AILP1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to aluminum ion, response to auxin stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G43830.1); Has 498 Blast hits to 498 proteins in 143 species: Archae - 4; Bacteria - 172; Metazoa - 14; Fungi - 0; Plants - 197; Viruses - 3; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT5G19140.2p  transcript_id AT5G19140.2  protein_id AT5G19140.2p  transcript_id AT5G19140.2  
At5g19140	chr5:006423398	0.0	W/6423398-6423600,6425010-6425250,6425343-6425463,6425552-6425661,6425756-6425785	AT5G19140.1  CDS  gene_syn AILP1, ATAILP1, T24G5.40, T24G5_40  gene AILP1  go_component plasma membrane|GO:0005886|17644812|IDA  go_process response to auxin stimulus|GO:0009733||ISS  go_process response to aluminum ion|GO:0010044||ISS  go_function molecular_function|GO:0003674||ND  product AILP1  note AILP1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to aluminum ion, response to auxin stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G43830.1); Has 1128 Blast hits to 1128 proteins in 380 species: Archae - 4; Bacteria - 553; Metazoa - 42; Fungi - 34; Plants - 256; Viruses - 3; Other Eukaryotes - 236 (source: NCBI BLink).  protein_id AT5G19140.1p  transcript_id AT5G19140.1  protein_id AT5G19140.1p  transcript_id AT5G19140.1  
At5g19150	chr5:006428183	0.0	C/6428183-6428402,6427976-6428052,6427783-6427892,6427564-6427687,6427404-6427466,6427143-6427306,6426946-6427007,6426800-6426866,6426637-6426687,6426401-6426532,6426280-6426307	AT5G19150.1  CDS  gene_syn T24G5.50, T24G5_50  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product carbohydrate kinase family  note carbohydrate kinase family; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family, carbohydrate kinase-related (InterPro:IPR000631); Has 2530 Blast hits to 2524 proteins in 1045 species: Archae - 118; Bacteria - 1629; Metazoa - 130; Fungi - 92; Plants - 24; Viruses - 0; Other Eukaryotes - 537 (source: NCBI BLink).  protein_id AT5G19150.1p  transcript_id AT5G19150.1  protein_id AT5G19150.1p  transcript_id AT5G19150.1  
At5g19150	chr5:006428183	0.0	C/6428183-6428402,6427976-6428052,6427783-6427892,6427564-6427687,6427404-6427466,6427143-6427306,6426946-6427007,6426800-6426866,6426637-6426687,6426401-6426532,6426280-6426307	AT5G19150.2  CDS  gene_syn T24G5.50, T24G5_50  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product carbohydrate kinase family  note carbohydrate kinase family; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family, carbohydrate kinase-related (InterPro:IPR000631); Has 2530 Blast hits to 2524 proteins in 1045 species: Archae - 118; Bacteria - 1629; Metazoa - 130; Fungi - 92; Plants - 24; Viruses - 0; Other Eukaryotes - 537 (source: NCBI BLink).  protein_id AT5G19150.2p  transcript_id AT5G19150.2  protein_id AT5G19150.2p  transcript_id AT5G19150.2  
At5g19151	chr5:006428572	0.0	W/6428572-6428734,6429486-6429547	AT5G19151.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G19151.1p  transcript_id AT5G19151.1  protein_id AT5G19151.1p  transcript_id AT5G19151.1  
At5g19160	chr5:006430725	0.0	W/6430725-6431182,6431357-6431746,6431831-6431989,6432069-6432456	AT5G19160.1  CDS  gene_syn T24G5.60, T24G5_60  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G06080.2); Has 715 Blast hits to 703 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 713; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G19160.1p  transcript_id AT5G19160.1  protein_id AT5G19160.1p  transcript_id AT5G19160.1  
At5g19165	chr5:006433770	0.0	C/6433770-6438242	AT5G19165.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.1e-237 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At5g19170	chr5:006445245	0.0	W/6445245-6445325,6445446-6445532,6445633-6445827,6446021-6446191,6446296-6446349,6446650-6446796,6446865-6447305	AT5G19170.1  CDS  gene_syn T24G5.70, T24G5_70  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18460.1); Has 423 Blast hits to 398 proteins in 18 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 10; Plants - 407; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G19170.1p  transcript_id AT5G19170.1  protein_id AT5G19170.1p  transcript_id AT5G19170.1  
At5g19172	chr5:006448620	0.0	C/6448620-6448704,6448182-6448351	AT5G19172.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19175.1); Has 19 Blast hits to 19 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G19172.1p  transcript_id AT5G19172.1  protein_id AT5G19172.1p  transcript_id AT5G19172.1  
At5g19175	chr5:006450164	0.0	C/6450164-6450245,6449803-6449969	AT5G19175.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19172.1); Has 15 Blast hits to 15 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G19175.1p  transcript_id AT5G19175.1  protein_id AT5G19175.1p  transcript_id AT5G19175.1  
At5g19180	chr5:006453375	0.0	W/6453375-6453488,6453580-6453743,6453880-6454082,6454165-6454397,6454502-6454564,6454646-6454702,6454858-6454979,6455108-6455225,6455460-6455750	AT5G19180.1  CDS  gene_syn E1 C-terminal related 1, ECR1, T24G5.80, T24G5_80  gene ECR1  function Encodes a subunit of a RUB-activating enzyme analogous to the E1 ubiquitin-activating enzyme. ECR1 functions as a heterodimer with AXR1 to activate RUB, a ubiquitin-related protein.  go_component cellular_component|GO:0005575||ND  go_process protein neddylation|GO:0045116|10611386|TAS  go_function small protein activating enzyme activity|GO:0008641|9624055|IDA  go_function small protein activating enzyme activity|GO:0008641|9624055|IMP  go_function NEDD8 activating enzyme activity|GO:0019781|9624055|IDA  go_function protein heterodimerization activity|GO:0046982|9624055|NAS  product ECR1 (E1 C-terminal related 1); NEDD8 activating enzyme/ protein heterodimerization/ small protein activating enzyme  note E1 C-terminal related 1 (ECR1); FUNCTIONS IN: NEDD8 activating enzyme activity, protein heterodimerization activity, small protein activating enzyme activity; INVOLVED IN: protein neddylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-activating enzyme repeat (InterPro:IPR000127), Ubiquitin-activating enzyme, E1, active site (InterPro:IPR018074), UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594), Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding (InterPro:IPR016040), E2 binding (InterPro:IPR014929); BEST Arabidopsis thaliana protein match is: SAE2 (SUMO-ACTIVATING ENZYME 2); SUMO activating enzyme (TAIR:AT2G21470.2); Has 8599 Blast hits to 8085 proteins in 1314 species: Archae - 135; Bacteria - 3993; Metazoa - 1243; Fungi - 696; Plants - 236; Viruses - 0; Other Eukaryotes - 2296 (source: NCBI BLink).  protein_id AT5G19180.1p  transcript_id AT5G19180.1  protein_id AT5G19180.1p  transcript_id AT5G19180.1  
At5g19190	chr5:006457349	0.0	W/6457349-6457486,6457592-6457918	AT5G19190.1  CDS  gene_syn T24G5.90, T24G5_90  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G06070.1); Has 73 Blast hits to 73 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT5G19190.1p  transcript_id AT5G19190.1  protein_id AT5G19190.1p  transcript_id AT5G19190.1  
At5g19200	chr5:006458995	0.0	W/6458995-6459525,6459692-6459839,6460374-6460690	AT5G19200.1  CDS  gene_syn T24G5.100, T24G5_100  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT3G06060.1); Has 73578 Blast hits to 73434 proteins in 2266 species: Archae - 444; Bacteria - 42615; Metazoa - 5390; Fungi - 4160; Plants - 1442; Viruses - 0; Other Eukaryotes - 19527 (source: NCBI BLink).  protein_id AT5G19200.1p  transcript_id AT5G19200.1  protein_id AT5G19200.1p  transcript_id AT5G19200.1  
At5g19210	chr5:006461444	0.0	W/6461444-6461712,6461805-6461898,6461992-6462105,6462180-6462293,6462376-6462480,6462618-6462776,6462898-6462966,6463040-6463129,6463207-6463347,6463424-6463687	AT5G19210.2  CDS  gene_syn T24G5.110, T24G5_110  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_process biological_process|GO:0008150||ND  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD/DEAH box helicase, putative  note DEAD/DEAH box helicase, putative; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: EMB1586 (embryo defective 1586); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding (TAIR:AT1G12770.1); Has 22750 Blast hits to 22265 proteins in 1644 species: Archae - 301; Bacteria - 8426; Metazoa - 4433; Fungi - 3052; Plants - 1322; Viruses - 6; Other Eukaryotes - 5210 (source: NCBI BLink).  protein_id AT5G19210.2p  transcript_id AT5G19210.2  protein_id AT5G19210.2p  transcript_id AT5G19210.2  
At5g19210	chr5:006462100	0.0	W/6462100-6462105,6462180-6462293,6462376-6462480,6462618-6462776,6462898-6462966,6463040-6463129,6463207-6463347,6463424-6463687	AT5G19210.1  CDS  gene_syn T24G5.110, T24G5_110  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_process biological_process|GO:0008150||ND  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD/DEAH box helicase, putative  note DEAD/DEAH box helicase, putative; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA/RNA helicase, C-terminal (InterPro:IPR001650); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase, putative (RH11) (TAIR:AT3G58510.3); Has 19258 Blast hits to 19253 proteins in 1579 species: Archae - 99; Bacteria - 7926; Metazoa - 3875; Fungi - 2621; Plants - 1198; Viruses - 4; Other Eukaryotes - 3535 (source: NCBI BLink).  protein_id AT5G19210.1p  transcript_id AT5G19210.1  protein_id AT5G19210.1p  transcript_id AT5G19210.1  
At5g19221	chr5:006464234	0.0	W/6464234-6466349	AT5G19221.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT5G19220  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G19221.1  
At5g19220	chr5:006466548	0.0	C/6466548-6466775,6466328-6466441,6466067-6466237,6465895-6465987,6465743-6465826,6465604-6465659,6465408-6465501,6465204-6465316,6465044-6465116,6464883-6464963,6464695-6464781,6464492-6464596,6464299-6464405,6464130-6464190,6463931-6464032	AT5G19220.1  CDS  gene_syn ADG2, ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1, ADPG PYROPHOSPHORYLASE, APL1, T24G5.120, T24G5_120  gene APL1  function Encodes the large subunit of ADP-glucose pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms (ApL1-4) have been identified. ApL1 is the major large subunit isoform present in leaves. Mutational analysis of APS1 suggests that APL1 and APL2 can compensate for loss of APS1 catalytic activity,suggesting both have catalytic as well as regulatory functions.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process glycogen biosynthetic process|GO:0005978||IEA  go_process biosynthetic process|GO:0009058||IEA  go_process cellulose biosynthetic process|GO:0030244||IEA  go_function glucose-1-phosphate adenylyltransferase activity|GO:0008878|18614708|IDA  go_function glucose-1-phosphate adenylyltransferase activity|GO:0008878||ISS  product APL1 (ADP GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1); glucose-1-phosphate adenylyltransferase  note ADP GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1 (APL1); FUNCTIONS IN: glucose-1-phosphate adenylyltransferase activity; INVOLVED IN: cellulose biosynthetic process, biosynthetic process, glycogen biosynthetic process; LOCATED IN: chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-1-phosphate adenylyltransferase (InterPro:IPR011831), ADP-glucose pyrophosphorylase, conserved site (InterPro:IPR005836), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: APL2 (ADPGLC-PPASE LARGE SUBUNIT); glucose-1-phosphate adenylyltransferase (TAIR:AT1G27680.1); Has 7567 Blast hits to 7512 proteins in 1246 species: Archae - 364; Bacteria - 4197; Metazoa - 109; Fungi - 46; Plants - 1393; Viruses - 0; Other Eukaryotes - 1458 (source: NCBI BLink).  protein_id AT5G19220.1p  transcript_id AT5G19220.1  protein_id AT5G19220.1p  transcript_id AT5G19220.1  
At5g19230	chr5:006467636	0.0	W/6467636-6467714,6467847-6468337	AT5G19230.1  CDS  gene_syn T24G5.130, T24G5_130  go_component plasma membrane|GO:0005886|17317660|IDA  go_component anchored to plasma membrane|GO:0046658|12805588|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: callus; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19240.1); Has 42 Blast hits to 41 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G19230.1p  transcript_id AT5G19230.1  protein_id AT5G19230.1p  transcript_id AT5G19230.1  
At5g19240	chr5:006470209	0.0	W/6470209-6470290,6470464-6470981	AT5G19240.1  CDS  gene_syn T24G5.140, T24G5_140  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19230.1); Has 42 Blast hits to 41 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G19240.1p  transcript_id AT5G19240.1  protein_id AT5G19240.1p  transcript_id AT5G19240.1  
At5g19250	chr5:006471983	0.0	W/6471983-6472064,6472300-6472808	AT5G19250.1  CDS  gene_syn T24G5.150, T24G5_150  go_component anchored to plasma membrane|GO:0046658|12805588|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G06035.1); Has 42 Blast hits to 41 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G19250.1p  transcript_id AT5G19250.1  protein_id AT5G19250.1p  transcript_id AT5G19250.1  
At5g19257	chr5:006477554	0.0	W/6477554-6477652	AT5G19257.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G19257.1p  transcript_id AT5G19257.1  protein_id AT5G19257.1p  transcript_id AT5G19257.1  
At5g19260	chr5:006479494	0.0	C/6479494-6480360	AT5G19260.1  CDS  gene_syn F7K24.10, F7K24_10  product unknown protein  note unknown protein; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G06020.1); Has 7144 Blast hits to 1261 proteins in 142 species: Archae - 0; Bacteria - 50; Metazoa - 5597; Fungi - 318; Plants - 227; Viruses - 42; Other Eukaryotes - 910 (source: NCBI BLink).  protein_id AT5G19260.1p  transcript_id AT5G19260.1  protein_id AT5G19260.1p  transcript_id AT5G19260.1  
At5g19270	chr5:006486955	0.0	C/6486955-6487009,6485617-6486659	AT5G19270.1  CDS  gene_syn T24G5.2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G03566.1); Has 59 Blast hits to 50 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G19270.1p  transcript_id AT5G19270.1  protein_id AT5G19270.1p  transcript_id AT5G19270.1  
At5g19280	chr5:006488450	0.0	W/6488450-6488593,6489738-6489927,6490103-6490303,6490409-6490584,6490670-6490828,6490918-6491061,6491149-6491210,6491670-6491808,6491919-6492013,6492135-6492164,6492497-6492612,6492700-6492832,6492918-6492972,6493051-6493182	AT5G19280.2  CDS  gene_syn KAPP, KINASE ASSOCIATED PROTEIN PHOSPHATASE, RAG1, ROOT ALTERNATED GROWTH 1, T24G5.3  gene KAPP  function kinase associated protein phosphatase composed of three domains: an amino-terminal signal anchor, a kinase interaction (KI) domain, and a type 2C protein phosphatase catalytic region  go_component plasma membrane|GO:0005886|12101128|IDA  go_process signal transduction|GO:0007165|10072399|IDA  go_process regulation of meristem organization|GO:0009934|9701578|IMP  go_process phosphorylation|GO:0016310|15592873|IDA  go_function phosphoprotein phosphatase activity|GO:0004721|9294234|IDA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  go_function protein kinase binding|GO:0019901|7973632|IPI  product KAPP (KINASE ASSOCIATED PROTEIN PHOSPHATASE); phosphoprotein phosphatase/ protein kinase binding / protein serine/threonine phosphatase  note KINASE ASSOCIATED PROTEIN PHOSPHATASE (KAPP); FUNCTIONS IN: protein kinase binding, protein serine/threonine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: regulation of meristem organization, signal transduction, phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Protein phosphatase 2C-related (InterPro:IPR001932), Forkhead-associated (InterPro:IPR000253), Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Kinase associated protein phosphatase (InterPro:IPR016660), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: WIN2 (HOPW1-1-INTERACTING 2); protein serine/threonine phosphatase (TAIR:AT4G31750.1).  protein_id AT5G19280.2p  transcript_id AT5G19280.2  protein_id AT5G19280.2p  transcript_id AT5G19280.2  
At5g19280	chr5:006488450	0.0	W/6488450-6488593,6489738-6489927,6490103-6490303,6490409-6490584,6490670-6490828,6490918-6491061,6491149-6491210,6491670-6491808,6491919-6492013,6492497-6492612,6492700-6492832,6492918-6492972,6493051-6493182	AT5G19280.1  CDS  gene_syn KAPP, KINASE ASSOCIATED PROTEIN PHOSPHATASE, RAG1, ROOT ALTERNATED GROWTH 1, T24G5.3  gene KAPP  function kinase associated protein phosphatase composed of three domains: an amino-terminal signal anchor, a kinase interaction (KI) domain, and a type 2C protein phosphatase catalytic region  go_component plasma membrane|GO:0005886|12101128|IDA  go_process signal transduction|GO:0007165|10072399|IDA  go_process regulation of meristem organization|GO:0009934|9701578|IMP  go_process phosphorylation|GO:0016310|15592873|IDA  go_function phosphoprotein phosphatase activity|GO:0004721|9294234|IDA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  go_function protein kinase binding|GO:0019901|7973632|IPI  product KAPP (KINASE ASSOCIATED PROTEIN PHOSPHATASE); phosphoprotein phosphatase/ protein kinase binding / protein serine/threonine phosphatase  note KINASE ASSOCIATED PROTEIN PHOSPHATASE (KAPP); FUNCTIONS IN: protein kinase binding, protein serine/threonine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: regulation of meristem organization, signal transduction, phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), SMAD/FHA domain (InterPro:IPR008984), Protein phosphatase 2C-related (InterPro:IPR001932), Kinase associated protein phosphatase (InterPro:IPR016660), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045), Forkhead-associated (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: WIN2 (HOPW1-1-INTERACTING 2); protein serine/threonine phosphatase (TAIR:AT4G31750.1); Has 3220 Blast hits to 3220 proteins in 329 species: Archae - 0; Bacteria - 304; Metazoa - 913; Fungi - 225; Plants - 1012; Viruses - 7; Other Eukaryotes - 759 (source: NCBI BLink).  protein_id AT5G19280.1p  transcript_id AT5G19280.1  protein_id AT5G19280.1p  transcript_id AT5G19280.1  
At5g19290	chr5:006494113	0.0	W/6494113-6495105	AT5G19290.1  CDS  gene_syn F7K24.40, F7K24_40  go_component cellular_component|GO:0005575||ND  go_function catalytic activity|GO:0003824||ISS  product esterase/lipase/thioesterase family protein  note esterase/lipase/thioesterase family protein; FUNCTIONS IN: catalytic activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: esterase/lipase/thioesterase family protein (TAIR:AT5G14980.1); Has 1459 Blast hits to 1457 proteins in 500 species: Archae - 13; Bacteria - 834; Metazoa - 101; Fungi - 51; Plants - 236; Viruses - 33; Other Eukaryotes - 191 (source: NCBI BLink).  protein_id AT5G19290.1p  transcript_id AT5G19290.1  protein_id AT5G19290.1p  transcript_id AT5G19290.1  
At5g19300	chr5:006495593	0.0	W/6495593-6495952,6496049-6496096,6496223-6496393,6496485-6496551,6496775-6496839,6496950-6497022,6497170-6497288,6497375-6497454,6497560-6497629,6497753-6497830,6497922-6497987	AT5G19300.1  CDS  gene_syn F7K24.50, F7K24_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Protein of unknown function DUF171 (InterPro:IPR003750); Has 4766 Blast hits to 2044 proteins in 217 species: Archae - 72; Bacteria - 102; Metazoa - 2264; Fungi - 372; Plants - 195; Viruses - 4; Other Eukaryotes - 1757 (source: NCBI BLink).  protein_id AT5G19300.1p  transcript_id AT5G19300.1  protein_id AT5G19300.1p  transcript_id AT5G19300.1  
At5g19310	chr5:006498906	0.0	W/6498906-6499082,6499262-6499418,6499527-6499591,6499685-6499873,6500040-6500189,6500331-6500711,6500793-6501052,6501131-6501346,6501551-6501758,6501852-6502005,6502110-6502715,6502801-6503432	AT5G19310.1  CDS  gene_syn F7K24.60, F7K24_60  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  go_function helicase activity|GO:0004386||ISS  go_function ATP binding|GO:0005524||ISS  product homeotic gene regulator, putative  note homeotic gene regulator, putative; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: ATCHR12; ATP binding / DNA binding / helicase/ nucleic acid binding (TAIR:AT3G06010.1); Has 23543 Blast hits to 17298 proteins in 1325 species: Archae - 119; Bacteria - 3571; Metazoa - 8080; Fungi - 3584; Plants - 1110; Viruses - 211; Other Eukaryotes - 6868 (source: NCBI BLink).  protein_id AT5G19310.1p  transcript_id AT5G19310.1  protein_id AT5G19310.1p  transcript_id AT5G19310.1  
At5g19315	chr5:006504538	0.0	W/6504538-6504598,6504719-6504900	AT5G19315.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08315.1); Has 13 Blast hits to 13 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G19315.1p  transcript_id AT5G19315.1  protein_id AT5G19315.1p  transcript_id AT5G19315.1  
At5g19320	chr5:006505310	0.0	C/6505310-6506947	AT5G19320.1  CDS  gene_syn RAN GTPASE ACTIVATING PROTEIN 2, RANGAP2  gene RANGAP2  function Encodes RAN GTPase activating protein 2. The protein is localized to the nuclear envelope during interphase.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component nuclear envelope|GO:0005635|12061901|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process nucleocytoplasmic transport|GO:0006913|12061901|TAS  go_function RAN GTPase activator activity|GO:0005098||ISS  product RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2); RAN GTPase activator  note RAN GTPASE ACTIVATING PROTEIN 2 (RANGAP2); FUNCTIONS IN: RAN GTPase activator activity; INVOLVED IN: response to salt stress, nucleocytoplasmic transport; LOCATED IN: nuclear envelope, endoplasmic reticulum, plasma membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1); RAN GTPase activator/ protein binding (TAIR:AT3G63130.1); Has 8083 Blast hits to 4173 proteins in 222 species: Archae - 0; Bacteria - 301; Metazoa - 4060; Fungi - 250; Plants - 370; Viruses - 10; Other Eukaryotes - 3092 (source: NCBI BLink).  protein_id AT5G19320.1p  transcript_id AT5G19320.1  protein_id AT5G19320.1p  transcript_id AT5G19320.1  
At5g19330	chr5:006512449	0.0	C/6512449-6512701,6512206-6512363,6511841-6512013,6511637-6511757,6511495-6511569,6511309-6511403,6511067-6511142,6510742-6510849,6510192-6510320,6510031-6510099,6509822-6509881,6509544-6509667,6509280-6509419,6509133-6509196,6508972-6509051,6508733-6508797,6508496-6508613,6508282-6508406,6508095-6508194	AT5G19330.1  CDS  gene_syn F7K24.80, F7K24_80  go_component plasma membrane|GO:0005886|17317660|IDA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function protein binding|GO:0005515||ISS  product armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing protein  note armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing protein; FUNCTIONS IN: protein binding, binding; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), Armadillo-like helical (InterPro:IPR011989), BTB/POZ fold (InterPro:IPR011333), Armadillo (InterPro:IPR000225), BTB/POZ-like (InterPro:IPR000210), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ABAP1 (ARMADILLO BTB ARABIDOPSIS PROTEIN 1); protein binding (TAIR:AT5G13060.1); Has 13522 Blast hits to 10213 proteins in 289 species: Archae - 10; Bacteria - 57; Metazoa - 9428; Fungi - 689; Plants - 2320; Viruses - 84; Other Eukaryotes - 934 (source: NCBI BLink).  protein_id AT5G19330.1p  transcript_id AT5G19330.1  protein_id AT5G19330.1p  transcript_id AT5G19330.1  
At5g19330	chr5:006512449	0.0	C/6512449-6512701,6512206-6512366,6511841-6512013,6511637-6511757,6511495-6511569,6511309-6511403,6511067-6511142,6510742-6510849,6510192-6510320,6510031-6510099,6509586-6509667,6509280-6509419,6509133-6509196,6508972-6509006,6508733-6508797,6508496-6508613,6508300-6508446	AT5G19330.2  CDS  gene_syn F7K24.80, F7K24_80  go_component plasma membrane|GO:0005886|17317660|IDA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function protein binding|GO:0005515||ISS  product armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing protein  note armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing protein; FUNCTIONS IN: protein binding, binding; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), Armadillo-like helical (InterPro:IPR011989), BTB/POZ fold (InterPro:IPR011333), Armadillo (InterPro:IPR000225), BTB/POZ-like (InterPro:IPR000210), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ABAP1 (ARMADILLO BTB ARABIDOPSIS PROTEIN 1); protein binding (TAIR:AT5G13060.1); Has 7884 Blast hits to 4738 proteins in 246 species: Archae - 10; Bacteria - 53; Metazoa - 4591; Fungi - 664; Plants - 1772; Viruses - 5; Other Eukaryotes - 789 (source: NCBI BLink).  protein_id AT5G19330.2p  transcript_id AT5G19330.2  protein_id AT5G19330.2p  transcript_id AT5G19330.2  
At5g19340	chr5:006515371	0.0	C/6515371-6516162	AT5G19340.1  CDS  gene_syn F7K24.90, F7K24_90  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05980.1); Has 959 Blast hits to 862 proteins in 48 species: Archae - 0; Bacteria - 4; Metazoa - 58; Fungi - 32; Plants - 66; Viruses - 4; Other Eukaryotes - 795 (source: NCBI BLink).  protein_id AT5G19340.1p  transcript_id AT5G19340.1  protein_id AT5G19340.1p  transcript_id AT5G19340.1  
At5g19350	chr5:006518978	0.0	W/6518978-6519124,6519608-6520085,6520190-6520278,6520360-6520490,6520608-6520698,6520785-6520931,6521009-6521106,6521199-6521295	AT5G19350.1  CDS  gene_syn F7K24.100, F7K24_100  go_function RNA binding|GO:0003723|11105760|ISS  product RNA-binding protein 45 (RBP45), putative  note RNA-binding protein 45 (RBP45), putative; FUNCTIONS IN: RNA binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: ATRBP45A (RNA-binding protein 45A); RNA binding (TAIR:AT5G54900.1); Has 22411 Blast hits to 13011 proteins in 601 species: Archae - 12; Bacteria - 1475; Metazoa - 12936; Fungi - 2368; Plants - 3555; Viruses - 0; Other Eukaryotes - 2065 (source: NCBI BLink).  protein_id AT5G19350.1p  transcript_id AT5G19350.1  protein_id AT5G19350.1p  transcript_id AT5G19350.1  
At5g19350	chr5:006518978	0.0	W/6518978-6519124,6519608-6520085,6520202-6520278,6520360-6520490,6520608-6520698,6520785-6520931,6521009-6521106,6521199-6521295	AT5G19350.2  CDS  gene_syn F7K24.100, F7K24_100  go_function RNA binding|GO:0003723|11105760|ISS  product RNA-binding protein 45 (RBP45), putative  note RNA-binding protein 45 (RBP45), putative; FUNCTIONS IN: RNA binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: ATRBP45A (RNA-binding protein 45A); RNA binding (TAIR:AT5G54900.1); Has 22733 Blast hits to 13179 proteins in 604 species: Archae - 12; Bacteria - 1481; Metazoa - 13128; Fungi - 2423; Plants - 3630; Viruses - 0; Other Eukaryotes - 2059 (source: NCBI BLink).  protein_id AT5G19350.2p  transcript_id AT5G19350.2  protein_id AT5G19350.2p  transcript_id AT5G19350.2  
At5g19360	chr5:006522970	0.0	C/6522970-6523780,6522731-6522883,6522541-6522656,6522280-6522447,6522070-6522197,6521894-6521993,6521716-6521811	AT5G19360.1  CDS  gene_syn CPK34, F7K24.110, F7K24_110  gene CPK34  function member of Calcium Dependent Protein Kinase  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  go_function kinase activity|GO:0016301||ISS  product CPK34; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase  note CPK34; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CPK17; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G12180.1); Has 104799 Blast hits to 96573 proteins in 2776 species: Archae - 60; Bacteria - 8082; Metazoa - 44261; Fungi - 13264; Plants - 18580; Viruses - 451; Other Eukaryotes - 20101 (source: NCBI BLink).  protein_id AT5G19360.1p  transcript_id AT5G19360.1  protein_id AT5G19360.1p  transcript_id AT5G19360.1  
At5g19370	chr5:006526389	0.0	C/6526389-6526629,6526062-6526181,6525663-6525754,6525286-6525386,6525092-6525196,6524750-6524858,6524432-6524482,6524247-6524327	AT5G19370.1  CDS  gene_syn F7K24.120, F7K24_120  go_component chloroplast|GO:0009507|18431481|IDA  go_function isomerase activity|GO:0016853||IEA  go_process biological_process|GO:0008150||ND  go_function isomerase activity|GO:0016853||ISS  product rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein  note rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein; FUNCTIONS IN: isomerase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Peptidyl-prolyl cis-trans isomerase, PpiC-type (InterPro:IPR000297); BEST Arabidopsis thaliana protein match is: CNX5 (CO-FACTOR FOR NITRATE, REDUCTASE AND XANTHINE DEHYDROGENASE 5); Mo-molybdopterin cofactor sulfurase (TAIR:AT5G55130.2); Has 6697 Blast hits to 6647 proteins in 1168 species: Archae - 22; Bacteria - 4699; Metazoa - 128; Fungi - 99; Plants - 68; Viruses - 0; Other Eukaryotes - 1681 (source: NCBI BLink).  protein_id AT5G19370.1p  transcript_id AT5G19370.1  protein_id AT5G19370.1p  transcript_id AT5G19370.1  
At5g19380	chr5:006530015	0.0	C/6530015-6530445,6528904-6529049,6528691-6528728,6528365-6528480,6528115-6528214,6527996-6528031,6527869-6527919,6527653-6527776,6527450-6527575,6527017-6527192	AT5G19380.1  CDS  gene_syn F7K24.130, F7K24_130  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12170.2); Has 165 Blast hits to 165 proteins in 53 species: Archae - 2; Bacteria - 40; Metazoa - 7; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT5G19380.1p  transcript_id AT5G19380.1  protein_id AT5G19380.1p  transcript_id AT5G19380.1  
At5g19380	chr5:006530015	0.0	C/6530015-6530445,6529880-6529943,6529359-6529474,6528904-6529049,6528691-6528728,6528365-6528480,6528115-6528214,6527996-6528031,6527869-6527919,6527653-6527776,6527450-6527575,6527017-6527192	AT5G19380.2  CDS  gene_syn F7K24.130, F7K24_130  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12170.2).  protein_id AT5G19380.2p  transcript_id AT5G19380.2  protein_id AT5G19380.2p  transcript_id AT5G19380.2  
At5g19390	chr5:006531906	0.0	W/6531906-6531959,6532513-6532549,6532680-6532756,6532890-6532960,6533040-6533118,6533228-6533357,6533524-6533643,6533898-6533975,6534130-6534185,6534262-6534331,6534464-6534551,6534780-6535023,6535098-6535313,6535594-6535938,6536134-6536183,6536449-6536509,6536584-6536667,6536777-6536887,6536970-6537139,6537433-6537502,6537587-6537793,6538012-6538206	AT5G19390.1  CDS  gene_syn F7K24.140, F7K24_140  function Encodes a protein with similarity to REN1, a Rho GTPase activating protein.  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process signal transduction|GO:0007165|15358268|ISS  go_function Rho GTPase activator activity|GO:0005100|19108776|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein  note pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein; FUNCTIONS IN: Rho GTPase activator activity, phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Rho GTPase activation protein (InterPro:IPR008936), Pleckstrin homology (InterPro:IPR001849), RhoGAP (InterPro:IPR000198); BEST Arabidopsis thaliana protein match is: pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein (TAIR:AT5G12150.1); Has 3710 Blast hits to 3630 proteins in 200 species: Archae - 2; Bacteria - 45; Metazoa - 2834; Fungi - 309; Plants - 134; Viruses - 0; Other Eukaryotes - 386 (source: NCBI BLink).  protein_id AT5G19390.1p  transcript_id AT5G19390.1  protein_id AT5G19390.1p  transcript_id AT5G19390.1  
At5g19390	chr5:006531906	0.0	W/6531906-6531959,6532513-6532549,6532680-6532756,6532890-6532960,6533040-6533118,6533228-6533357,6533524-6533643,6533898-6533975,6534130-6534185,6534262-6534331,6534464-6534551,6534780-6535023,6535098-6535313,6535594-6535938,6536134-6536183,6536449-6536509,6536584-6536667,6536777-6536887,6536970-6537139,6537433-6537502,6537587-6537793,6538012-6538206	AT5G19390.2  CDS  gene_syn F7K24.140, F7K24_140  function Encodes a protein with similarity to REN1, a Rho GTPase activating protein.  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process signal transduction|GO:0007165|15358268|ISS  go_function Rho GTPase activator activity|GO:0005100|19108776|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein  note pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein; FUNCTIONS IN: Rho GTPase activator activity, phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Rho GTPase activation protein (InterPro:IPR008936), Pleckstrin homology (InterPro:IPR001849), RhoGAP (InterPro:IPR000198); BEST Arabidopsis thaliana protein match is: pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein (TAIR:AT5G12150.1); Has 3710 Blast hits to 3630 proteins in 200 species: Archae - 2; Bacteria - 45; Metazoa - 2834; Fungi - 309; Plants - 134; Viruses - 0; Other Eukaryotes - 386 (source: NCBI BLink).  protein_id AT5G19390.2p  transcript_id AT5G19390.2  protein_id AT5G19390.2p  transcript_id AT5G19390.2  
At5g19390	chr5:006531906	0.0	W/6531906-6531959,6532513-6532549,6532680-6532756,6532890-6532960,6533040-6533118,6533228-6533357,6533524-6533643,6533898-6533975,6534130-6534185,6534262-6534331,6534464-6534551,6534780-6535023,6535098-6535313,6535594-6535938,6536134-6536183,6536449-6536509,6536584-6536667,6536777-6536887,6536970-6537139,6537433-6537502,6537587-6537793,6538019-6538069	AT5G19390.3  CDS  gene_syn F7K24.140, F7K24_140  function Encodes a protein with similarity to REN1, a Rho GTPase activating protein.  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process signal transduction|GO:0007165|15358268|ISS  go_function Rho GTPase activator activity|GO:0005100|19108776|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein  note pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein; FUNCTIONS IN: Rho GTPase activator activity, phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Rho GTPase activation protein (InterPro:IPR008936), Pleckstrin homology (InterPro:IPR001849), RhoGAP (InterPro:IPR000198); BEST Arabidopsis thaliana protein match is: pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein (TAIR:AT5G12150.2); Has 3642 Blast hits to 3558 proteins in 184 species: Archae - 2; Bacteria - 29; Metazoa - 2791; Fungi - 299; Plants - 133; Viruses - 0; Other Eukaryotes - 388 (source: NCBI BLink).  protein_id AT5G19390.3p  transcript_id AT5G19390.3  protein_id AT5G19390.3p  transcript_id AT5G19390.3  
At5g19390	chr5:006531906	0.0	W/6531906-6531959,6532513-6532549,6532680-6532756,6532890-6532960,6533040-6533118,6533228-6533357,6533524-6533643,6533898-6533975,6534130-6534185,6534262-6534331,6534464-6534551,6534780-6535023,6535098-6535313,6535594-6535938,6536134-6536183,6536449-6536509,6536584-6536667,6536777-6536887,6536970-6537143	AT5G19390.4  CDS  gene_syn F7K24.140, F7K24_140  function Encodes a protein with similarity to REN1, a Rho GTPase activating protein.  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process signal transduction|GO:0007165|15358268|ISS  go_function Rho GTPase activator activity|GO:0005100|19108776|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein  note pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein; FUNCTIONS IN: Rho GTPase activator activity, phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Rho GTPase activation protein (InterPro:IPR008936), Pleckstrin homology (InterPro:IPR001849), RhoGAP (InterPro:IPR000198); BEST Arabidopsis thaliana protein match is: pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein (TAIR:AT5G12150.2); Has 3400 Blast hits to 3384 proteins in 149 species: Archae - 0; Bacteria - 6; Metazoa - 2703; Fungi - 281; Plants - 125; Viruses - 0; Other Eukaryotes - 285 (source: NCBI BLink).  protein_id AT5G19390.4p  transcript_id AT5G19390.4  protein_id AT5G19390.4p  transcript_id AT5G19390.4  
At5g19400	chr5:006540603	0.0	W/6540603-6540674,6540870-6541466,6541562-6541684,6541798-6542012,6542090-6544262	AT5G19400.1  CDS  gene_syn F7K24.150, F7K24_150, SMG7  gene SMG7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SMG7  note SMG7; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28260.2); Has 471 Blast hits to 456 proteins in 96 species: Archae - 0; Bacteria - 0; Metazoa - 314; Fungi - 104; Plants - 44; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT5G19400.1p  transcript_id AT5G19400.1  protein_id AT5G19400.1p  transcript_id AT5G19400.1  
At5g19410	chr5:006545237	0.0	C/6545237-6547111	AT5G19410.1  CDS  gene_syn F7K24.160, F7K24_160  go_component chloroplast|GO:0009507||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ABC transporter family protein  note ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: chloroplast, membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 (InterPro:IPR000412), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT5G52860.1); Has 235751 Blast hits to 214342 proteins in 2657 species: Archae - 4341; Bacteria - 160871; Metazoa - 8177; Fungi - 4897; Plants - 2814; Viruses - 11; Other Eukaryotes - 54640 (source: NCBI BLink).  protein_id AT5G19410.1p  transcript_id AT5G19410.1  protein_id AT5G19410.1p  transcript_id AT5G19410.1  
At5g19420	chr5:006552795	0.0	C/6552795-6552866,6552284-6552370,6552045-6552134,6551473-6551553,6551157-6551351,6548959-6551085,6548654-6548800,6548187-6548569,6547945-6548080	AT5G19420.1  CDS  gene_syn F7K24.170, F7K24_170  go_function zinc ion binding|GO:0008270||IEA  go_function chromatin binding|GO:0003682||ISS  go_function zinc ion binding|GO:0008270||ISS  go_function Ran GTPase binding|GO:0008536||ISS  product Ran GTPase binding / chromatin binding / zinc ion binding  note Ran GTPase binding / chromatin binding / zinc ion binding; FUNCTIONS IN: chromatin binding, zinc ion binding, Ran GTPase binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Pleckstrin homology (InterPro:IPR001849), Zinc finger, FYVE-type (InterPro:IPR000306), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Zinc finger, FYVE-related (InterPro:IPR017455), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Pleckstrin homology-type (InterPro:IPR011993), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Ran GTPase binding / chromatin binding / zinc ion binding (TAIR:AT5G12350.1); Has 17603 Blast hits to 6762 proteins in 319 species: Archae - 42; Bacteria - 1409; Metazoa - 8088; Fungi - 887; Plants - 1514; Viruses - 3; Other Eukaryotes - 5660 (source: NCBI BLink).  protein_id AT5G19420.1p  transcript_id AT5G19420.1  protein_id AT5G19420.1p  transcript_id AT5G19420.1  
At5g19430	chr5:006553998	0.0	W/6553998-6554072,6554508-6554638,6554933-6555037,6555160-6555616	AT5G19430.1  CDS  gene_syn F7K24.180, F7K24_180  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G12310.1); Has 381 Blast hits to 381 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 124; Fungi - 19; Plants - 127; Viruses - 42; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT5G19430.1p  transcript_id AT5G19430.1  protein_id AT5G19430.1p  transcript_id AT5G19430.1  
At5g19440	chr5:006556493	0.0	W/6556493-6556616,6556875-6557044,6557125-6557316,6557444-6557606,6557716-6557902,6557979-6558123	AT5G19440.1  CDS  gene_syn F7K24.190, F7K24_190  function similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase  go_component plasma membrane|GO:0005886|17644812|IDA  go_process response to salt stress|GO:0009651|11351099|IEP  go_function alcohol dehydrogenase activity|GO:0004022|14745009|ISS  product cinnamyl-alcohol dehydrogenase, putative (CAD)  note cinnamyl-alcohol dehydrogenase, putative (CAD); FUNCTIONS IN: alcohol dehydrogenase activity; INVOLVED IN: response to salt stress; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamyl-alcohol dehydrogenase, putative (CAD) (TAIR:AT1G51410.1); Has 6802 Blast hits to 6788 proteins in 1048 species: Archae - 74; Bacteria - 2387; Metazoa - 335; Fungi - 580; Plants - 1410; Viruses - 49; Other Eukaryotes - 1967 (source: NCBI BLink).  protein_id AT5G19440.1p  transcript_id AT5G19440.1  protein_id AT5G19440.1p  transcript_id AT5G19440.1  
At5g19450	chr5:006560962	0.0	C/6560962-6561471,6560648-6560771,6560413-6560556,6559990-6560142,6559803-6559918,6559541-6559711,6559233-6559463,6558672-6558824	AT5G19450.1  CDS  gene_syn CALCIUM-DEPENDENT PROTEIN KINASE 19, CDPK19, CPK8, F7K24.200, F7K24_200  gene CDPK19  function calcium-dependent protein kinase (CDPK19) mRNA, complete  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  go_function kinase activity|GO:0016301||ISS  product CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19); ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase  note CALCIUM-DEPENDENT PROTEIN KINASE 19 (CDPK19); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CPK7 (calmodulin-domain protein kinase 7); ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT5G12480.1); Has 90662 Blast hits to 88547 proteins in 2580 species: Archae - 74; Bacteria - 8139; Metazoa - 39890; Fungi - 10028; Plants - 13387; Viruses - 414; Other Eukaryotes - 18730 (source: NCBI BLink).  protein_id AT5G19450.1p  transcript_id AT5G19450.1  protein_id AT5G19450.1p  transcript_id AT5G19450.1  
At5g19450	chr5:006560962	0.0	C/6560962-6561471,6560648-6560771,6560413-6560556,6559990-6560142,6559803-6559918,6559541-6559711,6559233-6559463,6558672-6558824	AT5G19450.2  CDS  gene_syn CALCIUM-DEPENDENT PROTEIN KINASE 19, CDPK19, CPK8, F7K24.200, F7K24_200  gene CDPK19  function calcium-dependent protein kinase (CDPK19) mRNA, complete  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  go_function kinase activity|GO:0016301||ISS  product CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19); ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase  note CALCIUM-DEPENDENT PROTEIN KINASE 19 (CDPK19); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CPK7 (calmodulin-domain protein kinase 7); ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT5G12480.1); Has 90662 Blast hits to 88547 proteins in 2580 species: Archae - 74; Bacteria - 8139; Metazoa - 39890; Fungi - 10028; Plants - 13387; Viruses - 414; Other Eukaryotes - 18730 (source: NCBI BLink).  protein_id AT5G19450.2p  transcript_id AT5G19450.2  protein_id AT5G19450.2p  transcript_id AT5G19450.2  
At5g19460	chr5:006563112	0.0	W/6563112-6563387,6563534-6563598,6563728-6563917,6563998-6564078,6564214-6564339,6564494-6564573,6564661-6564776,6564867-6564987,6565109-6565178	AT5G19460.1  CDS  gene_syn Arabidopsis thaliana Nudix hydrolase homolog 20, F7K24.210, F7K24_210, atnudt20  gene atnudt20  go_component chloroplast|GO:0009507|18431481|IDA  go_function hydrolase activity|GO:0016787||IEA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product atnudt20 (Arabidopsis thaliana Nudix hydrolase homolog 20); hydrolase  note Arabidopsis thaliana Nudix hydrolase homolog 20 (atnudt20); FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), NUDIX hydrolase, core (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: atnudt24 (Arabidopsis thaliana Nudix hydrolase homolog 24); hydrolase (TAIR:AT5G19470.1); Has 488 Blast hits to 487 proteins in 193 species: Archae - 0; Bacteria - 189; Metazoa - 62; Fungi - 128; Plants - 26; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT5G19460.1p  transcript_id AT5G19460.1  protein_id AT5G19460.1p  transcript_id AT5G19460.1  
At5g19470	chr5:006566357	0.0	W/6566357-6566626,6566754-6566818,6566907-6567075,6567159-6567239,6567334-6567459,6567586-6567665,6568072-6568187,6568282-6568402,6568563-6568632	AT5G19470.1  CDS  gene_syn Arabidopsis thaliana Nudix hydrolase homolog 24, F7K24.220, F7K24_220, atnudt24  gene atnudt24  go_component chloroplast|GO:0009507||IEA  go_function hydrolase activity|GO:0016787||IEA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product atnudt24 (Arabidopsis thaliana Nudix hydrolase homolog 24); hydrolase  note Arabidopsis thaliana Nudix hydrolase homolog 24 (atnudt24); FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: vascular tissue, male gametophyte; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), NUDIX hydrolase, core (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: atnudt20 (Arabidopsis thaliana Nudix hydrolase homolog 20); hydrolase (TAIR:AT5G19460.1); Has 491 Blast hits to 490 proteins in 193 species: Archae - 0; Bacteria - 189; Metazoa - 62; Fungi - 128; Plants - 28; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT5G19470.1p  transcript_id AT5G19470.1  protein_id AT5G19470.1p  transcript_id AT5G19470.1  
At5g19473	chr5:006569268	0.0	W/6569268-6569285,6569544-6569774,6570630-6570680	AT5G19473.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Defence response, Rin4 (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09960.1); Has 39 Blast hits to 39 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G19473.1p  transcript_id AT5G19473.1  protein_id AT5G19473.1p  transcript_id AT5G19473.1  
At5g19480	chr5:006571828	0.0	W/6571828-6571855,6571944-6572236,6572385-6572588,6572698-6572757,6572891-6572929	AT5G19480.1  CDS  gene_syn F7K24.230, F7K24_230  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12230.1); Has 16108 Blast hits to 7312 proteins in 337 species: Archae - 6; Bacteria - 291; Metazoa - 8114; Fungi - 1489; Plants - 1051; Viruses - 36; Other Eukaryotes - 5121 (source: NCBI BLink).  protein_id AT5G19480.1p  transcript_id AT5G19480.1  protein_id AT5G19480.1p  transcript_id AT5G19480.1  
At5g19480	chr5:006571828	0.0	W/6571828-6571855,6571944-6572236,6572385-6572588,6572698-6572757,6572891-6572929	AT5G19480.2  CDS  gene_syn F7K24.230, F7K24_230  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12230.1); Has 16108 Blast hits to 7312 proteins in 337 species: Archae - 6; Bacteria - 291; Metazoa - 8114; Fungi - 1489; Plants - 1051; Viruses - 36; Other Eukaryotes - 5121 (source: NCBI BLink).  protein_id AT5G19480.2p  transcript_id AT5G19480.2  protein_id AT5G19480.2p  transcript_id AT5G19480.2  
At5g19485	chr5:006576287	0.0	C/6576287-6576352,6576117-6576212,6575932-6576009,6575746-6575826,6575439-6575658,6575294-6575352,6575135-6575184,6574973-6575060,6574633-6574884,6574454-6574546,6574271-6574375,6574066-6574182,6573907-6573972	AT5G19485.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function transferase activity|GO:0016740||IEA  go_process biological_process|GO:0008150||ND  product transferase  note transferase; FUNCTIONS IN: transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), Bacterial transferase hexapeptide repeat (InterPro:IPR001451); BEST Arabidopsis thaliana protein match is: eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein (TAIR:AT4G18300.1); Has 4160 Blast hits to 4011 proteins in 906 species: Archae - 288; Bacteria - 1752; Metazoa - 384; Fungi - 310; Plants - 211; Viruses - 0; Other Eukaryotes - 1215 (source: NCBI BLink).  protein_id AT5G19485.1p  transcript_id AT5G19485.1  protein_id AT5G19485.1p  transcript_id AT5G19485.1  
At5g19490	chr5:006578241	0.0	C/6578241-6578273,6577820-6577892,6577623-6577716,6577427-6577537,6577267-6577324,6576769-6577194	AT5G19490.1  CDS  gene_syn T20D1.10, T20D1_10  go_component intracellular|GO:0005622||IEA  go_function DNA binding|GO:0003677||IEA  go_function sequence-specific DNA binding|GO:0043565||IEA  go_process biological_process|GO:0008150||ND  product DNA binding / sequence-specific DNA binding  note DNA binding / sequence-specific DNA binding; FUNCTIONS IN: sequence-specific DNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11); DNA binding / transcription factor (TAIR:AT3G12480.1); Has 738 Blast hits to 738 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 279; Fungi - 192; Plants - 206; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT5G19490.1p  transcript_id AT5G19490.1  protein_id AT5G19490.1p  transcript_id AT5G19490.1  
At5g19500	chr5:006579019	0.0	W/6579019-6579340,6579423-6579463,6579566-6579658,6579743-6579817,6579904-6579953,6580042-6580131,6580215-6580271,6580403-6580472,6580558-6580659,6580746-6580798,6580884-6581037,6581114-6581198,6581298-6581426,6581503-6581699	AT5G19500.1  CDS  gene_syn T20D1.20, T20D1_20  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_function amine transmembrane transporter activity|GO:0005275||ISS  product tryptophan/tyrosine permease family protein  note tryptophan/tyrosine permease family protein; FUNCTIONS IN: amine transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tryptophan/tyrosine permease (InterPro:IPR018227); BEST Arabidopsis thaliana protein match is: tryptophan/tyrosine permease family protein (TAIR:AT2G33260.1); Has 2064 Blast hits to 2059 proteins in 397 species: Archae - 11; Bacteria - 1826; Metazoa - 9; Fungi - 2; Plants - 99; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT5G19500.1p  transcript_id AT5G19500.1  protein_id AT5G19500.1p  transcript_id AT5G19500.1  
At5g19510	chr5:006583052	0.0	C/6583052-6583137,6582845-6582961,6582682-6582751,6582342-6582465,6582115-6582228,6581854-6582017	AT5G19510.1  CDS  gene_syn T20D1.30, T20D1_30  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_function translation elongation factor activity|GO:0003746||IEA  go_component eukaryotic translation elongation factor 1 complex|GO:0005853||ISS  go_process translational elongation|GO:0006414||ISS  go_function translation elongation factor activity|GO:0003746||ISS  product elongation factor 1B alpha-subunit 2 (eEF1Balpha2)  note elongation factor 1B alpha-subunit 2 (eEF1Balpha2); FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation, defense response to bacterium; LOCATED IN: apoplast, eukaryotic translation elongation factor 1 complex; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EF1B/ribosomal protein S6 (InterPro:IPR014717), Translation elongation factor EF1B, beta and delta chains, guanine nucleotide exchange (InterPro:IPR014038), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Translation elongation factor EF1B, beta/delta chains, conserved site (InterPro:IPR001326); BEST Arabidopsis thaliana protein match is: elongation factor 1B alpha-subunit 1 (eEF1Balpha1) (TAIR:AT5G12110.1); Has 715 Blast hits to 715 proteins in 199 species: Archae - 0; Bacteria - 2; Metazoa - 371; Fungi - 103; Plants - 110; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).  protein_id AT5G19510.1p  transcript_id AT5G19510.1  protein_id AT5G19510.1p  transcript_id AT5G19510.1  
At5g19520	chr5:006586079	0.0	W/6586079-6587448,6587533-6587653,6587808-6588101,6588201-6588403,6588531-6588771	AT5G19520.1  CDS  gene_syn MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 9, MSL9, T20D1.40, T20D1_40  gene MSL9  go_component nucleus|GO:0005634|18433157|IDA  go_component plasma membrane|GO:0005886|18485707|IDA  go_component membrane|GO:0016020||ISS  go_process detection of mechanical stimulus|GO:0050982|18485707|IMP  go_function mechanically-gated ion channel activity|GO:0008381|18485707|IMP  product MSL9 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 9); mechanically-gated ion channel  note MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 9 (MSL9); FUNCTIONS IN: mechanically-gated ion channel activity; INVOLVED IN: detection of mechanical stimulus; LOCATED IN: nucleus, plasma membrane, membrane; EXPRESSED IN: root tip, root; CONTAINS InterPro DOMAIN/s: Membrane protein, At2g17000, predicted (InterPro:IPR016688), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: MSL10 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 10); mechanically-gated ion channel (TAIR:AT5G12080.3); Has 1950 Blast hits to 1947 proteins in 608 species: Archae - 62; Bacteria - 1279; Metazoa - 0; Fungi - 123; Plants - 84; Viruses - 2; Other Eukaryotes - 400 (source: NCBI BLink).  protein_id AT5G19520.1p  transcript_id AT5G19520.1  protein_id AT5G19520.1p  transcript_id AT5G19520.1  
At5g19530	chr5:006590937	0.0	C/6590937-6591070,6590788-6590854,6590559-6590653,6590235-6590337,6590059-6590147,6589815-6589971,6589633-6589708,6589355-6589550,6589176-6589257	AT5G19530.2  CDS  gene_syn ACAULIS 5, ACL5, SPERMINE SYNTHASE, T20D1.50, T20D1_50  gene ACL5  function Encodes a spermine synthase. Required for internode elongation and vascular development, specifically in the mechanism that defines the boundaries between veins and nonvein regions. This mechanism may be mediated by polar auxin transport. Though ACL5 has been shown to function as a spermine synthase in E. coli, an ACL5 knockout has no effect on the endogenous levels of free and conjugated polyamines in Arabidopsis, suggesting that ACL5 may have a very specific or altogether different in vivo function.  go_component cytoplasm|GO:0005737|15894745|TAS  go_process unidimensional cell growth|GO:0009826|9375398|IGI  go_process auxin polar transport|GO:0009926|15894745|IMP  go_process phloem or xylem histogenesis|GO:0010087|15894745|IMP  go_process vessel member cell differentiation|GO:0048759|18599510|IMP  go_function thermospermine synthase activity|GO:0010487|17560575|IDA  go_function spermine synthase activity|GO:0016768|10944107|IDA  product ACL5 (ACAULIS 5); spermine synthase/ thermospermine synthase  note ACAULIS 5 (ACL5); FUNCTIONS IN: spermine synthase activity, thermospermine synthase activity; INVOLVED IN: phloem or xylem histogenesis, unidimensional cell growth, vessel member cell differentiation, auxin polar transport; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: SPDS1 (spermidine synthase 1); spermidine synthase (TAIR:AT1G23820.1); Has 3354 Blast hits to 3354 proteins in 884 species: Archae - 109; Bacteria - 1499; Metazoa - 228; Fungi - 127; Plants - 307; Viruses - 0; Other Eukaryotes - 1084 (source: NCBI BLink).  protein_id AT5G19530.2p  transcript_id AT5G19530.2  protein_id AT5G19530.2p  transcript_id AT5G19530.2  
At5g19530	chr5:006590937	0.0	C/6590937-6591091,6590788-6590854,6590559-6590653,6590235-6590337,6590059-6590147,6589815-6589971,6589633-6589708,6589355-6589550,6589176-6589257	AT5G19530.1  CDS  gene_syn ACAULIS 5, ACL5, SPERMINE SYNTHASE, T20D1.50, T20D1_50  gene ACL5  function Encodes a spermine synthase. Required for internode elongation and vascular development, specifically in the mechanism that defines the boundaries between veins and nonvein regions. This mechanism may be mediated by polar auxin transport. Though ACL5 has been shown to function as a spermine synthase in E. coli, an ACL5 knockout has no effect on the endogenous levels of free and conjugated polyamines in Arabidopsis, suggesting that ACL5 may have a very specific or altogether different in vivo function.  go_component cytoplasm|GO:0005737|15894745|TAS  go_process unidimensional cell growth|GO:0009826|9375398|IGI  go_process auxin polar transport|GO:0009926|15894745|IMP  go_process phloem or xylem histogenesis|GO:0010087|15894745|IMP  go_process vessel member cell differentiation|GO:0048759|18599510|IMP  go_function thermospermine synthase activity|GO:0010487|17560575|IDA  go_function spermine synthase activity|GO:0016768|10944107|IDA  product ACL5 (ACAULIS 5); spermine synthase/ thermospermine synthase  note ACAULIS 5 (ACL5); FUNCTIONS IN: spermine synthase activity, thermospermine synthase activity; INVOLVED IN: phloem or xylem histogenesis, unidimensional cell growth, vessel member cell differentiation, auxin polar transport; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: SPDS1 (spermidine synthase 1); spermidine synthase (TAIR:AT1G23820.1); Has 3354 Blast hits to 3354 proteins in 884 species: Archae - 109; Bacteria - 1499; Metazoa - 228; Fungi - 127; Plants - 307; Viruses - 0; Other Eukaryotes - 1084 (source: NCBI BLink).  protein_id AT5G19530.1p  transcript_id AT5G19530.1  protein_id AT5G19530.1p  transcript_id AT5G19530.1  
At5g19540	chr5:006595748	0.0	W/6595748-6596095,6596185-6596222,6596333-6596603,6596770-6597056,6597280-6597724	AT5G19540.1  CDS  gene_syn T20D1.60, T20D1_60  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 48 Blast hits to 47 proteins in 16 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT5G19540.1p  transcript_id AT5G19540.1  protein_id AT5G19540.1p  transcript_id AT5G19540.1  
At5g19550	chr5:006598201	0.0	W/6598201-6598254,6598597-6598668,6598783-6598844,6598939-6599022,6599148-6599247,6599343-6599463,6599739-6599902,6600046-6600183,6600321-6600442,6600806-6600900,6601015-6601135,6601513-6601597	AT5G19550.1  CDS  gene_syn AAT2, ASP2, ASPARTATE AMINOTRANSFERASE 2, ASPARTATE AMINOTRANSFERASE, CYTOPLASMIC ISOZYME 1, ASPAT, T20D1.70, T20D1_70  gene ASP2  function Nitrogen metabolism. Major cytosolic isoenzyme controlling aspartate biosynthesis in the light.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component cytosol|GO:0005829|7894512|IDA  go_process nitrogen compound metabolic process|GO:0006807|9611168|IMP  go_function L-aspartate:2-oxoglutarate aminotransferase activity|GO:0004069|9535706|IDA  product ASP2 (ASPARTATE AMINOTRANSFERASE 2); L-aspartate:2-oxoglutarate aminotransferase  note ASPARTATE AMINOTRANSFERASE 2 (ASP2); FUNCTIONS IN: L-aspartate:2-oxoglutarate aminotransferase activity; INVOLVED IN: nitrogen compound metabolic process; LOCATED IN: cytosol, cell wall, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase, class I and II (InterPro:IPR004839), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Aspartate/other aminotransferase (InterPro:IPR000796), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: ASP3 (ASPARTATE AMINOTRANSFERASE 3); L-aspartate:2-oxoglutarate aminotransferase (TAIR:AT5G11520.1); Has 3678 Blast hits to 3675 proteins in 858 species: Archae - 2; Bacteria - 2099; Metazoa - 396; Fungi - 264; Plants - 316; Viruses - 0; Other Eukaryotes - 601 (source: NCBI BLink).  protein_id AT5G19550.1p  transcript_id AT5G19550.1  protein_id AT5G19550.1p  transcript_id AT5G19550.1  
At5g19560	chr5:006603291	0.0	W/6603291-6603420,6604054-6604170,6604281-6604435,6604538-6604612,6604957-6605229,6605314-6605640,6605726-6606130	AT5G19560.1  CDS  gene_syn ARABIDOPSIS THALIANA ROP UANINE NUCLEOTIDE EXCHANGE FACTOR 10, ATROPGEF10, ROP UANINE NUCLEOTIDE EXCHANGE FACTOR 10, ROPGEF10, T20D1.80, T20D1_80  gene ROPGEF10  function Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function Rho guanyl-nucleotide exchange factor activity|GO:0005089|15980860|ISS  product ROPGEF10 (ROP UANINE NUCLEOTIDE EXCHANGE FACTOR 10); Rho guanyl-nucleotide exchange factor  note ROP UANINE NUCLEOTIDE EXCHANGE FACTOR 10 (ROPGEF10); FUNCTIONS IN: Rho guanyl-nucleotide exchange factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: ROPGEF8; Rho guanyl-nucleotide exchange factor (TAIR:AT3G24620.1); Has 177 Blast hits to 176 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 174; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G19560.1p  transcript_id AT5G19560.1  protein_id AT5G19560.1p  transcript_id AT5G19560.1  
At5g19570	chr5:006606739	0.0	W/6606739-6607152	AT5G19570.1  CDS  gene_syn T20D1.90, T20D1_90  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0546 (InterPro:IPR018908); Has 152 Blast hits to 152 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 85; Fungi - 35; Plants - 9; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT5G19570.1p  transcript_id AT5G19570.1  protein_id AT5G19570.1p  transcript_id AT5G19570.1  
At5g19580	chr5:006609059	0.0	C/6609059-6609517,6607595-6608920	AT5G19580.1  CDS  gene_syn T20D1.100, T20D1_100  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glyoxal oxidase-related  note glyoxal oxidase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Galactose oxidase, beta-propeller (InterPro:IPR015916), Immunoglobulin-like fold (InterPro:IPR013783), Immunoglobulin E-set (InterPro:IPR014756), Glyoxal oxidase, N-terminal (InterPro:IPR009880), Region of unknown function DUF1929 (InterPro:IPR015202); BEST Arabidopsis thaliana protein match is: glyoxal oxidase-related (TAIR:AT1G67290.1); Has 581 Blast hits to 577 proteins in 114 species: Archae - 0; Bacteria - 238; Metazoa - 0; Fungi - 172; Plants - 154; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT5G19580.1p  transcript_id AT5G19580.1  protein_id AT5G19580.1p  transcript_id AT5G19580.1  
At5g19590	chr5:006611614	0.0	C/6611614-6612069	AT5G19590.1  CDS  gene_syn T29J13.10, T29J13_10  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02360.1); Has 213 Blast hits to 213 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 212; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G19590.1p  transcript_id AT5G19590.1  protein_id AT5G19590.1p  transcript_id AT5G19590.1  
At5g19600	chr5:006616558	0.0	C/6616558-6616891,6615475-6615679,6615189-6615360,6615025-6615090,6614626-6614739,6614369-6614485,6614140-6614266,6613515-6614054,6613347-6613423,6613113-6613265	AT5G19600.1  CDS  gene_syn SULFATE TRANSPORTER 3;5, SULTR3;5, T29J13.20, T29J13_20  gene SULTR3;5  function Encodes sulfate transporter Sultr3;5.  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process sulfate transport|GO:0008272||IEA  go_function sulfate transmembrane transporter activity|GO:0015116||ISS  product SULTR3;5 (SULFATE TRANSPORTER 3;5); sulfate transmembrane transporter  note SULFATE TRANSPORTER 3;5 (SULTR3;5); FUNCTIONS IN: sulfate transmembrane transporter activity; INVOLVED IN: sulfate transport, transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Sulphate transporter (InterPro:IPR011547), Sulphate transporter/antisigma-factor antagonist STAS (InterPro:IPR002645), Sulphate anion transporter, conserved site (InterPro:IPR018045), Sulphate anion transporter (InterPro:IPR001902); BEST Arabidopsis thaliana protein match is: SULTR3;1 (SULFATE TRANSPORTER 3;1); secondary active sulfate transmembrane transporter/ sulfate transmembrane transporter/ transporter (TAIR:AT3G51895.1); Has 6863 Blast hits to 6814 proteins in 1095 species: Archae - 34; Bacteria - 3439; Metazoa - 981; Fungi - 315; Plants - 323; Viruses - 0; Other Eukaryotes - 1771 (source: NCBI BLink).  protein_id AT5G19600.1p  transcript_id AT5G19600.1  protein_id AT5G19600.1p  transcript_id AT5G19600.1  
At5g19610	chr5:006621560	0.0	C/6621560-6622045,6620943-6621472,6617746-6620857	AT5G19610.1  CDS  gene_syn T29J13.30, T29J13_30  go_component intracellular|GO:0005622||IEA  go_process regulation of ARF protein signal transduction|GO:0032012||IEA  go_function ARF guanyl-nucleotide exchange factor activity|GO:0005086||IEA  product sec7 domain-containing protein  note sec7 domain-containing protein; FUNCTIONS IN: ARF guanyl-nucleotide exchange factor activity; INVOLVED IN: regulation of ARF protein signal transduction; LOCATED IN: intracellular; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904); BEST Arabidopsis thaliana protein match is: GN (GNOM); GTP:GDP antiporter/ protein homodimerization (TAIR:AT1G13980.1); Has 2001 Blast hits to 1710 proteins in 176 species: Archae - 0; Bacteria - 24; Metazoa - 1144; Fungi - 441; Plants - 117; Viruses - 0; Other Eukaryotes - 275 (source: NCBI BLink).  protein_id AT5G19610.1p  transcript_id AT5G19610.1  protein_id AT5G19610.1p  transcript_id AT5G19610.1  
At5g19620	chr5:006623323	0.0	W/6623323-6624030,6624124-6624217,6624592-6624674,6624783-6624880,6625022-6625091,6625369-6625462,6625643-6625724,6625811-6625846,6625950-6626103,6626178-6626318,6626495-6626565,6626687-6626765,6626842-6626957,6627075-6627222,6627306-6627375,6627487-6627641	AT5G19620.1  CDS  gene_syn ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, ATOEP80, OEP80, OUTER ENVELOPE PROTEIN OF 80 KDA, T29J13.40, T29J13_40, TOC75  gene OEP80  function AtOEP80 is paralog to the chloroplastic protein translocation channel Toc75  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_component chloroplast envelope|GO:0009941|15255865|IDA  product OEP80 (OUTER ENVELOPE PROTEIN OF 80 KDA)  note OUTER ENVELOPE PROTEIN OF 80 KDA (OEP80); LOCATED IN: mitochondrion, chloroplast, plastid, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial surface antigen (D15) (InterPro:IPR000184), Surface antigen variable number (InterPro:IPR010827); BEST Arabidopsis thaliana protein match is: chloroplast outer membrane protein-related (TAIR:AT3G44160.1); Has 2218 Blast hits to 2183 proteins in 678 species: Archae - 0; Bacteria - 1596; Metazoa - 2; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 537 (source: NCBI BLink).  protein_id AT5G19620.1p  transcript_id AT5G19620.1  protein_id AT5G19620.1p  transcript_id AT5G19620.1  
At5g19630	chr5:006629574	0.0	C/6629574-6629937,6628147-6628469	AT5G19630.1  CDS  gene_syn T29J13.50, T29J13_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 715 Blast hits to 715 proteins in 261 species: Archae - 13; Bacteria - 472; Metazoa - 0; Fungi - 13; Plants - 35; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink).  protein_id AT5G19630.1p  transcript_id AT5G19630.1  protein_id AT5G19630.1p  transcript_id AT5G19630.1  
At5g19640	chr5:006636460	0.0	W/6636460-6636507,6636598-6636760,6636844-6637651,6637780-6638590	AT5G19640.1  CDS  gene_syn T29J13.60, T29J13_60  go_component membrane|GO:0016020||IEA  go_process oligopeptide transport|GO:0006857||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: leaf whorl, petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: NRT1.5 (NITRATE TRANSPORTER 1.5); nitrate transmembrane transporter/ transporter (TAIR:AT1G32450.1); Has 3708 Blast hits to 3432 proteins in 637 species: Archae - 0; Bacteria - 1307; Metazoa - 672; Fungi - 261; Plants - 1123; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink).  protein_id AT5G19640.1p  transcript_id AT5G19640.1  protein_id AT5G19640.1p  transcript_id AT5G19640.1  
At5g19650	chr5:006639632	0.0	C/6639632-6640297	AT5G19650.1  CDS  gene_syn ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 8, ATOFP8, OFP8, T29J13.70, T29J13_70  gene OFP8  go_process biological_process|GO:0008150||ND  product OFP8 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 8)  note ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 8 (OFP8); INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623, plant (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: OFP7 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7) (TAIR:AT2G18500.1); Has 224 Blast hits to 224 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 224; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G19650.1p  transcript_id AT5G19650.1  protein_id AT5G19650.1p  transcript_id AT5G19650.1  
At5g19660	chr5:006645870	0.0	C/6645870-6646418,6645611-6645739,6645318-6645470,6644921-6645037,6644613-6644797,6644239-6644502,6643066-6644134,6642465-6642968,6642322-6642382,6642118-6642203	AT5G19660.1  CDS  gene_syn ATS1P, ATSBT6.1, S1P, SITE-1 PROTEASE, T29J13.80, T29J13_80  gene S1P  function S1P appears to function as a Golgi-localized subtilase and to help protect seedlings against salt and osmotic stress. The roots of s1p-3 mutants are hypersensitive to NaCl, KCl, LiCl, and mannitol. Several salt-stress responsive genes show weaker induction in an s1P-3 mutant background. The proteolytic cleavage of the bZIP17 transcription factor depends on S1P in vitro. And there is evidence that S1P can cleave bZIP17 in vitro.  go_component endoplasmic reticulum|GO:0005783||IDA  go_component Golgi apparatus|GO:0005794|17662035|IDA  go_process proteolysis|GO:0006508|17662035|IDA  go_process proteolysis|GO:0006508|17662035|IMP  go_process proteolysis|GO:0006508||ISS  go_process hyperosmotic response|GO:0006972|17662035|IMP  go_process hyperosmotic salinity response|GO:0042538|17662035|IMP  go_function endopeptidase activity|GO:0004175|17662035|IDA  go_function serine-type endopeptidase activity|GO:0004252||IDA  product S1P (SITE-1 PROTEASE); endopeptidase/ serine-type endopeptidase  note SITE-1 PROTEASE (S1P); FUNCTIONS IN: endopeptidase activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis, hyperosmotic salinity response, hyperosmotic response; LOCATED IN: endoplasmic reticulum, Golgi apparatus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500); BEST Arabidopsis thaliana protein match is: ATSBT5.2; identical protein binding / serine-type endopeptidase (TAIR:AT1G20160.2); Has 6657 Blast hits to 6446 proteins in 1061 species: Archae - 178; Bacteria - 3457; Metazoa - 702; Fungi - 758; Plants - 413; Viruses - 0; Other Eukaryotes - 1149 (source: NCBI BLink).  protein_id AT5G19660.1p  transcript_id AT5G19660.1  protein_id AT5G19660.1p  transcript_id AT5G19660.1  
At5g19670	chr5:006647025	0.0	W/6647025-6647708,6647827-6647927,6648254-6648602,6648690-6649358	AT5G19670.1  CDS  gene_syn T29J13.90, T29J13_90  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product exostosin family protein  note exostosin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: exostosin family protein (TAIR:AT5G25820.1); Has 802 Blast hits to 800 proteins in 88 species: Archae - 0; Bacteria - 10; Metazoa - 236; Fungi - 4; Plants - 470; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT5G19670.1p  transcript_id AT5G19670.1  protein_id AT5G19670.1p  transcript_id AT5G19670.1  
At5g19680	chr5:006649663	0.0	W/6649663-6649932,6650160-6650390,6650473-6650619,6650708-6650850,6650935-6651049,6651484-6651564	AT5G19680.1  CDS  gene_syn T29J13.100, T29J13_100  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT3G15410.1); Has 29854 Blast hits to 15686 proteins in 655 species: Archae - 20; Bacteria - 8097; Metazoa - 15577; Fungi - 752; Plants - 2607; Viruses - 68; Other Eukaryotes - 2733 (source: NCBI BLink).  protein_id AT5G19680.1p  transcript_id AT5G19680.1  protein_id AT5G19680.1p  transcript_id AT5G19680.1  
At5g19690	chr5:006652649	0.0	W/6652649-6652774,6653257-6653319,6653424-6653479,6653566-6653637,6653728-6653833,6653913-6653963,6654207-6654302,6654481-6654540,6654632-6654745,6654894-6654980,6655328-6655431,6655609-6655704,6655849-6655969,6656079-6656159,6656252-6656380,6656476-6656712,6656822-6656965,6657094-6657280,6657361-6657458,6657576-6657655,6657727-6657814,6657897-6657986,6658161-6658214	AT5G19690.1  CDS  gene_syn STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A, STT3A, T29J13.110, T29J13_110  gene STT3A  function encodes an oligosaccharyl transferase involved response to high salt. Mutants are hypersensitive to high salt conditions  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process response to salt stress|GO:0009651|12972670|IMP  go_function oligosaccharyl transferase activity|GO:0004576||ISS  product STT3A (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A); oligosaccharyl transferase  note STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A (STT3A); FUNCTIONS IN: oligosaccharyl transferase activity; INVOLVED IN: response to salt stress; LOCATED IN: endoplasmic reticulum, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligosaccharyl transferase, STT3 subunit (InterPro:IPR003674); BEST Arabidopsis thaliana protein match is: STT3B (staurosporin and temperature sensitive 3-like b); oligosaccharyl transferase (TAIR:AT1G34130.1); Has 788 Blast hits to 723 proteins in 217 species: Archae - 149; Bacteria - 33; Metazoa - 264; Fungi - 93; Plants - 47; Viruses - 0; Other Eukaryotes - 202 (source: NCBI BLink).  protein_id AT5G19690.1p  transcript_id AT5G19690.1  protein_id AT5G19690.1p  transcript_id AT5G19690.1  
At5g19700	chr5:006660821	0.0	C/6660821-6662347	AT5G19700.1  CDS  gene_syn T29J13.120, T29J13_120  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020|11152613|ISS  go_function transporter activity|GO:0005215||ISS  product MATE efflux protein-related  note MATE efflux protein-related; FUNCTIONS IN: drug transporter activity, antiporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux protein-related (TAIR:AT4G29140.1); Has 5830 Blast hits to 5778 proteins in 1092 species: Archae - 100; Bacteria - 3815; Metazoa - 128; Fungi - 208; Plants - 689; Viruses - 0; Other Eukaryotes - 890 (source: NCBI BLink).  protein_id AT5G19700.1p  transcript_id AT5G19700.1  protein_id AT5G19700.1p  transcript_id AT5G19700.1  
At5g19710	chr5:006666048	0.0	C/6666048-6666107,6665321-6665412,6665171-6665242,6664885-6664957,6664745-6664792	AT5G19710.1  CDS  gene_syn T29J13.130, T29J13_130  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sepal; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: AHP4 (HPT PHOSPHOTRANSMITTER 4); histidine phosphotransfer kinase/ transferase, transferring phosphorus-containing groups (TAIR:AT3G16360.1); Has 24 Blast hits to 24 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G19710.1p  transcript_id AT5G19710.1  protein_id AT5G19710.1p  transcript_id AT5G19710.1  
At5g19720	chr5:006667664	0.0	W/6667664-6667726,6667821-6667921,6668012-6668117,6668189-6668278,6668366-6668423,6668493-6668587	AT5G19720.1  CDS  gene_syn T29J13.140, T29J13_140  go_component cytoplasm|GO:0005737||IEA  go_process translation|GO:0006412||IEA  go_process glutamyl-tRNA aminoacylation|GO:0006424||IEA  go_process glutaminyl-tRNA aminoacylation|GO:0006425||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function glutamine-tRNA ligase activity|GO:0004819||IEA  go_function ATP binding|GO:0005524||IEA  go_process glutamyl-tRNA aminoacylation|GO:0006424||ISS  go_function ATP binding|GO:0005524||ISS  product tRNA synthetase class I (E and Q) family protein  note tRNA synthetase class I (E and Q) family protein; FUNCTIONS IN: glutamine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: glutaminyl-tRNA aminoacylation, glutamyl-tRNA aminoacylation, translation; LOCATED IN: cytoplasm; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage, D bilateral stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Glutamyl/glutaminyl-tRNA synthetase, class Ic (InterPro:IPR000924), Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding (InterPro:IPR011035), Glutaminyl-tRNA synthetase, class Ic (InterPro:IPR004514); BEST Arabidopsis thaliana protein match is: OVA9 (ovule abortion 9); glutamine-tRNA ligase (TAIR:AT1G25350.1); Has 1861 Blast hits to 1861 proteins in 757 species: Archae - 0; Bacteria - 1176; Metazoa - 120; Fungi - 87; Plants - 27; Viruses - 0; Other Eukaryotes - 451 (source: NCBI BLink).  protein_id AT5G19720.1p  transcript_id AT5G19720.1  protein_id AT5G19720.1p  transcript_id AT5G19720.1  
At5g19729	chr5:006670309	0.0	C/6670309-6670422	AT5G19729.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G19729.1p  transcript_id AT5G19729.1  protein_id AT5G19729.1p  transcript_id AT5G19729.1  
At5g19730	chr5:006670562	0.0	W/6670562-6670932,6671815-6672004,6672098-6672304,6672383-6672618,6673055-6673202	AT5G19730.1  CDS  gene_syn T29J13.150, T29J13_150  go_process cell wall modification|GO:0042545||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component cell wall|GO:0005618|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, cytoplasm, plant-type cell wall; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT5G47500.1); Has 1233 Blast hits to 1201 proteins in 178 species: Archae - 0; Bacteria - 259; Metazoa - 1; Fungi - 135; Plants - 838; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G19730.1p  transcript_id AT5G19730.1  protein_id AT5G19730.1p  transcript_id AT5G19730.1  
At5g19740	chr5:006673986	0.0	W/6673986-6674894,6674968-6675035,6675115-6675196,6675281-6675373,6675465-6675617,6675697-6675765,6675840-6675927,6676014-6676186,6676279-6676395,6676474-6676767	AT5G19740.1  CDS  gene_syn T29J13.160, T29J13_160  go_component vacuole|GO:0005773|15215502|IDA  go_process proteolysis|GO:0006508||IEA  go_process proteolysis|GO:0006508||ISS  go_function dipeptidase activity|GO:0016805|11549767|ISS  product peptidase M28 family protein  note peptidase M28 family protein; FUNCTIONS IN: dipeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Transferrin receptor-like, dimerisation (InterPro:IPR007365), Peptidase M28 (InterPro:IPR007484); BEST Arabidopsis thaliana protein match is: AMP1 (ALTERED MERISTEM PROGRAM 1); carboxypeptidase/ dipeptidase (TAIR:AT3G54720.1); Has 2509 Blast hits to 2472 proteins in 344 species: Archae - 16; Bacteria - 796; Metazoa - 572; Fungi - 328; Plants - 72; Viruses - 0; Other Eukaryotes - 725 (source: NCBI BLink).  protein_id AT5G19740.1p  transcript_id AT5G19740.1  protein_id AT5G19740.1p  transcript_id AT5G19740.1  
At5g19750	chr5:006677124	0.0	W/6677124-6677473,6677678-6677765,6678042-6678136,6678292-6678364,6678455-6678547,6678658-6678744,6679047-6679127	AT5G19750.1  CDS  gene_syn T29J13.170, T29J13_170  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component peroxisomal membrane|GO:0005778||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product peroxisomal membrane 22 kDa family protein  note peroxisomal membrane 22 kDa family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: peroxisomal membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mpv17/PMP22 (InterPro:IPR007248); BEST Arabidopsis thaliana protein match is: peroxisomal membrane protein 22 kDa, putative (TAIR:AT2G14860.1); Has 15236 Blast hits to 7051 proteins in 599 species: Archae - 10; Bacteria - 4387; Metazoa - 5579; Fungi - 966; Plants - 2426; Viruses - 138; Other Eukaryotes - 1730 (source: NCBI BLink).  protein_id AT5G19750.1p  transcript_id AT5G19750.1  protein_id AT5G19750.1p  transcript_id AT5G19750.1  
At5g19760	chr5:006681729	0.0	C/6681729-6681845,6681241-6681324,6680934-6680995,6680468-6680829,6679746-6679960,6679591-6679647	AT5G19760.1  CDS  gene_syn T29J13.180, T29J13_180  go_component cell wall|GO:0005618|16287169|IDA  go_component mitochondrion|GO:0005739|15276431|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process transport|GO:0006810||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function binding|GO:0005488||ISS  go_function oxidative phosphorylation uncoupler activity|GO:0017077||ISS  product dicarboxylate/tricarboxylate carrier (DTC)  note dicarboxylate/tricarboxylate carrier (DTC); FUNCTIONS IN: oxidative phosphorylation uncoupler activity, binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: in 6 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: UCP5 (UNCOUPLING PROTEIN 5); binding (TAIR:AT2G22500.1); Has 13427 Blast hits to 8696 proteins in 334 species: Archae - 0; Bacteria - 0; Metazoa - 6956; Fungi - 3507; Plants - 1796; Viruses - 0; Other Eukaryotes - 1168 (source: NCBI BLink).  protein_id AT5G19760.1p  transcript_id AT5G19760.1  protein_id AT5G19760.1p  transcript_id AT5G19760.1  
At5g19770	chr5:006684362	0.0	C/6684362-6684474,6684065-6684279,6683788-6683987,6683168-6683676,6682761-6683076	AT5G19770.1  CDS  gene_syn T29J13.190, T29J13_190, TUA3  gene TUA3  function tubulin 3  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process microtubule-based process|GO:0007017||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_process protein polymerization|GO:0051258||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_component tubulin complex|GO:0045298|1498608|ISS  go_function structural constituent of cytoskeleton|GO:0005200|1498608|ISS  product TUA3; structural constituent of cytoskeleton  note TUA3; FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: microtubule-based process, protein polymerization, microtubule-based movement; LOCATED IN: cytosol, tubulin complex, cell wall, plasma membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Alpha tubulin (InterPro:IPR002452), Tubulin, conserved site (InterPro:IPR017975), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase (InterPro:IPR003008), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: TUA5; structural constituent of cytoskeleton (TAIR:AT5G19780.1); Has 16419 Blast hits to 16337 proteins in 3501 species: Archae - 0; Bacteria - 27; Metazoa - 3569; Fungi - 9044; Plants - 1007; Viruses - 0; Other Eukaryotes - 2772 (source: NCBI BLink).  protein_id AT5G19770.1p  transcript_id AT5G19770.1  protein_id AT5G19770.1p  transcript_id AT5G19770.1  
At5g19780	chr5:006687212	0.0	W/6687212-6687324,6687408-6687622,6687700-6687899,6688011-6688519,6688611-6688926	AT5G19780.1  CDS  gene_syn ALPHA TUBULIN, T29J13.200, TUA5  gene TUA5  function Encodes an isoform of alpha tubulin. Closely related to adjacent gene TUA3 suggesting recent duplication.  go_component cell wall|GO:0005618|16287169|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytosol|GO:0005829|18433157|IDA  go_component tubulin complex|GO:0045298|1498608|ISS  go_process microtubule-based process|GO:0007017|1498608|TAS  go_function structural constituent of cytoskeleton|GO:0005200|1498608|ISS  product TUA5; structural constituent of cytoskeleton  note TUA5; FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: response to cadmium ion, microtubule-based process; LOCATED IN: cytosol, tubulin complex, cell wall, membrane; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Alpha tubulin (InterPro:IPR002452), Tubulin, conserved site (InterPro:IPR017975), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase (InterPro:IPR003008), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: TUA3; structural constituent of cytoskeleton (TAIR:AT5G19770.1); Has 16419 Blast hits to 16337 proteins in 3501 species: Archae - 0; Bacteria - 27; Metazoa - 3569; Fungi - 9044; Plants - 1007; Viruses - 0; Other Eukaryotes - 2772 (source: NCBI BLink).  protein_id AT5G19780.1p  transcript_id AT5G19780.1  protein_id AT5G19780.1p  transcript_id AT5G19780.1  
At5g19790	chr5:006689271	0.0	C/6689271-6690032	AT5G19790.1  CDS  gene_syn RAP2.11, T29J13.210, T29J13_210, related to AP2 11  gene RAP2.11  function encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family (RAP2.11). The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634|16581911|IDA  go_function DNA binding|GO:0003677|9192694|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9192694|TAS  product RAP2.11 (related to AP2 11); DNA binding / transcription factor  note related to AP2 11 (RAP2.11); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: root hair, epidermis, primary root differentiation zone; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: CRF1 (CYTOKININ RESPONSE FACTOR 1); DNA binding / transcription factor (TAIR:AT4G11140.1); Has 3767 Blast hits to 3689 proteins in 202 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 3727; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT5G19790.1p  transcript_id AT5G19790.1  protein_id AT5G19790.1p  transcript_id AT5G19790.1  
At5g19800	chr5:006690648	0.0	W/6690648-6690938	AT5G19800.1  CDS  gene_syn T29J13.220, T29J13_220  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: proline-rich extensin-like family protein (TAIR:AT5G19810.1); Has 19071 Blast hits to 7418 proteins in 493 species: Archae - 28; Bacteria - 1293; Metazoa - 6531; Fungi - 1916; Plants - 5793; Viruses - 1061; Other Eukaryotes - 2449 (source: NCBI BLink).  protein_id AT5G19800.1p  transcript_id AT5G19800.1  protein_id AT5G19800.1p  transcript_id AT5G19800.1  
At5g19810	chr5:006693052	0.0	W/6693052-6693801	AT5G19810.1  CDS  gene_syn T29J13.230, T29J13_230  go_component endomembrane system|GO:0012505||IEA  product proline-rich extensin-like family protein  note proline-rich extensin-like family protein; LOCATED IN: endomembrane system; Has 155059 Blast hits to 43694 proteins in 1542 species: Archae - 462; Bacteria - 26833; Metazoa - 63885; Fungi - 17633; Plants - 22015; Viruses - 4712; Other Eukaryotes - 19519 (source: NCBI BLink).  protein_id AT5G19810.1p  transcript_id AT5G19810.1  protein_id AT5G19810.1p  transcript_id AT5G19810.1  
At5g19820	chr5:006700015	0.0	C/6700015-6701247,6699656-6699859,6699475-6699579,6699296-6699361,6699047-6699211,6698879-6698953,6698634-6698788,6698288-6698423,6698136-6698205,6697921-6698048,6697776-6697832,6697260-6697445,6697097-6697189,6696775-6696860,6696554-6696687,6696332-6696468,6696147-6696238,6695991-6696057,6695731-6695892	AT5G19820.1  CDS  gene_syn T29J13.240, T29J13_240, emb2734, embryo defective 2734  gene emb2734  go_component cell wall|GO:0005618|16287169|IDA  go_function binding|GO:0005488||IEA  go_component phycobilisome|GO:0030089||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function lyase activity|GO:0016829||ISS  product emb2734 (embryo defective 2734); binding / lyase  note embryo defective 2734 (emb2734); FUNCTIONS IN: lyase activity, binding; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cell wall, phycobilisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: importin beta-2 subunit family protein (TAIR:AT4G27640.1); Has 1488 Blast hits to 1367 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 670; Fungi - 432; Plants - 150; Viruses - 0; Other Eukaryotes - 236 (source: NCBI BLink).  protein_id AT5G19820.1p  transcript_id AT5G19820.1  protein_id AT5G19820.1p  transcript_id AT5G19820.1  
At5g19830	chr5:006703383	0.0	W/6703383-6703493,6703600-6703684,6703796-6703863,6704202-6704252,6704356-6704429,6704655-6704713,6704811-6704887,6704991-6705125	AT5G19830.1  CDS  gene_syn T29J13.250, T29J13_250  go_component mitochondrion|GO:0005739||IEA  go_process translation|GO:0006412||IEA  go_function aminoacyl-tRNA hydrolase activity|GO:0004045||IEA  go_process translation|GO:0006412||ISS  go_function aminoacyl-tRNA hydrolase activity|GO:0004045||ISS  product aminoacyl-tRNA hydrolase  note aminoacyl-tRNA hydrolase; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; LOCATED IN: mitochondrion; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, conserved site (InterPro:IPR018171), Peptidyl-tRNA hydrolase (InterPro:IPR001328); BEST Arabidopsis thaliana protein match is: peptidyl-tRNA hydrolase family protein (TAIR:AT5G16140.2); Has 5409 Blast hits to 5409 proteins in 1418 species: Archae - 0; Bacteria - 2886; Metazoa - 37; Fungi - 46; Plants - 76; Viruses - 0; Other Eukaryotes - 2364 (source: NCBI BLink).  protein_id AT5G19830.1p  transcript_id AT5G19830.1  protein_id AT5G19830.1p  transcript_id AT5G19830.1  
At5g19840	chr5:006705372	0.0	W/6705372-6705470,6705559-6705636,6705740-6705823,6705951-6706094,6706191-6706259,6706342-6706468,6706737-6706809,6706960-6707076,6707609-6707728,6707851-6707869,6708031-6708112,6708188-6708343,6708428-6708501,6708681-6708796,6708892-6708985,6709317-6709382	AT5G19840.1  CDS  gene_syn T29J13.260, T29J13_260  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product transcription factor jumonji (jmjC) domain-containing protein  note transcription factor jumonji (jmjC) domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347); BEST Arabidopsis thaliana protein match is: transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT3G20810.2); Has 1237 Blast hits to 1234 proteins in 236 species: Archae - 0; Bacteria - 265; Metazoa - 548; Fungi - 149; Plants - 105; Viruses - 6; Other Eukaryotes - 164 (source: NCBI BLink).  protein_id AT5G19840.1p  transcript_id AT5G19840.1  protein_id AT5G19840.1p  transcript_id AT5G19840.1  
At5g19850	chr5:006711436	0.0	C/6711436-6711662,6711222-6711314,6710932-6711143,6710701-6710845,6710558-6710630,6710317-6710463,6710119-6710244,6709976-6710032	AT5G19850.1  CDS  gene_syn T29J13.270, T29J13_270  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT5G38520.1); Has 7686 Blast hits to 7686 proteins in 1013 species: Archae - 67; Bacteria - 4924; Metazoa - 449; Fungi - 69; Plants - 394; Viruses - 0; Other Eukaryotes - 1783 (source: NCBI BLink).  protein_id AT5G19850.1p  transcript_id AT5G19850.1  protein_id AT5G19850.1p  transcript_id AT5G19850.1  
At5g19855	chr5:006713164	0.0	C/6713164-6713445,6712977-6713068,6712795-6712852,6712390-6712455,6712166-6712279	AT5G19855.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 483 Blast hits to 483 proteins in 366 species: Archae - 0; Bacteria - 441; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT5G19855.1p  transcript_id AT5G19855.1  protein_id AT5G19855.1p  transcript_id AT5G19855.1  
At5g19860	chr5:006715340	0.0	C/6715340-6715837,6714533-6714580	AT5G19860.1  CDS  gene_syn T29J13.3  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55265.1); Has 347 Blast hits to 347 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 346; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G19860.1p  transcript_id AT5G19860.1  protein_id AT5G19860.1p  transcript_id AT5G19860.1  
At5g19870	chr5:006716182	0.0	C/6716182-6717012	AT5G19870.1  CDS  gene_syn T29J13.1  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55230.1); Has 271 Blast hits to 267 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 146; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G19870.1p  transcript_id AT5G19870.1  protein_id AT5G19870.1p  transcript_id AT5G19870.1  
At5g19875	chr5:006718412	0.0	W/6718412-6718783	AT5G19875.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31940.1); Has 63 Blast hits to 63 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G19875.1p  transcript_id AT5G19875.1  protein_id AT5G19875.1p  transcript_id AT5G19875.1  
At5g19880	chr5:006722202	0.0	C/6722202-6722411,6721453-6721650,6721103-6721268,6720578-6720993	AT5G19880.1  CDS  gene_syn F28I16.30, F28I16_30  go_component endomembrane system|GO:0012505||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process response to virus|GO:0009615||ISS  go_process response to ethylene stimulus|GO:0009723||ISS  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to ethylene stimulus, response to oxidative stress, response to virus, N-terminal protein myristoylation; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT5G06720.1); Has 2756 Blast hits to 2744 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 30; Plants - 2698; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT5G19880.1p  transcript_id AT5G19880.1  protein_id AT5G19880.1p  transcript_id AT5G19880.1  
At5g19890	chr5:006725653	0.0	C/6725653-6725877,6725344-6725526,6724872-6725034,6724372-6724787	AT5G19890.1  CDS  gene_syn F28I16.40, F28I16_40  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT5G06730.1); Has 2820 Blast hits to 2810 proteins in 191 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 39; Plants - 2752; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT5G19890.1p  transcript_id AT5G19890.1  protein_id AT5G19890.1p  transcript_id AT5G19890.1  
At5g19900	chr5:006728561	0.0	C/6728561-6730045	AT5G19900.1  CDS  gene_syn F28I16.50, F28I16_50  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product PRLI-interacting factor, putative  note PRLI-interacting factor, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 1528 Blast hits to 1237 proteins in 215 species: Archae - 5; Bacteria - 69; Metazoa - 541; Fungi - 137; Plants - 125; Viruses - 37; Other Eukaryotes - 614 (source: NCBI BLink).  protein_id AT5G19900.1p  transcript_id AT5G19900.1  protein_id AT5G19900.1p  transcript_id AT5G19900.1  
At5g19910	chr5:006732772	0.0	C/6732772-6732821,6732595-6732692,6732374-6732470,6732201-6732279,6731614-6731867,6731484-6731496	AT5G19910.1  CDS  gene_syn F28I16.60, F28I16_60  go_component mediator complex|GO:0000119||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function RNA polymerase II transcription mediator activity|GO:0016455||IEA  product SOH1 family protein  note SOH1 family protein; FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: regulation of transcription; LOCATED IN: mediator complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SOH1 (InterPro:IPR008831); Has 313 Blast hits to 313 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 114; Fungi - 103; Plants - 26; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT5G19910.1p  transcript_id AT5G19910.1  protein_id AT5G19910.1p  transcript_id AT5G19910.1  
At5g19920	chr5:006737084	0.0	C/6737084-6737266,6735778-6736507,6735540-6735696,6735215-6735259,6734676-6734841,6734024-6734394,6733622-6733940	AT5G19920.1  CDS  gene_syn F28I16.70, F28I16_70  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein (TAIR:AT5G50970.1); Has 820 Blast hits to 752 proteins in 164 species: Archae - 4; Bacteria - 193; Metazoa - 265; Fungi - 128; Plants - 83; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink).  protein_id AT5G19920.1p  transcript_id AT5G19920.1  protein_id AT5G19920.1p  transcript_id AT5G19920.1  
At5g19930	chr5:006739135	0.0	C/6739135-6739283,6738914-6739027,6738411-6738633,6738087-6738335,6737872-6738003	AT5G19930.1  CDS  gene_syn F28I16.80, F28I16_80  go_component endomembrane system|GO:0012505||IEA  product integral membrane family protein  note integral membrane family protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF92, transmembrane (InterPro:IPR002794); Has 682 Blast hits to 682 proteins in 225 species: Archae - 93; Bacteria - 179; Metazoa - 99; Fungi - 48; Plants - 47; Viruses - 0; Other Eukaryotes - 216 (source: NCBI BLink).  protein_id AT5G19930.1p  transcript_id AT5G19930.1  protein_id AT5G19930.1p  transcript_id AT5G19930.1  
At5g19940	chr5:006739693	0.0	W/6739693-6739917,6740009-6740132,6740206-6740385,6740471-6740609,6740708-6740747	AT5G19940.2  CDS  gene_syn F28I16.90, F28I16_90  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_process biological_process|GO:0008150||ND  product plastid-lipid associated protein PAP-related / fibrillin-related  note plastid-lipid associated protein PAP-related / fibrillin-related; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages.  protein_id AT5G19940.2p  transcript_id AT5G19940.2  protein_id AT5G19940.2p  transcript_id AT5G19940.2  
At5g19940	chr5:006739693	0.0	W/6739693-6739917,6740009-6740132,6740206-6740385,6740471-6740661	AT5G19940.1  CDS  gene_syn F28I16.90, F28I16_90  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function structural molecule activity|GO:0005198||IEA  go_process biological_process|GO:0008150||ND  product plastid-lipid associated protein PAP-related / fibrillin-related  note plastid-lipid associated protein PAP-related / fibrillin-related; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAP fibrillin (InterPro:IPR006843); Has 80 Blast hits to 80 proteins in 23 species: Archae - 0; Bacteria - 19; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G19940.1p  transcript_id AT5G19940.1  protein_id AT5G19940.1p  transcript_id AT5G19940.1  
At5g19950	chr5:006743421	0.0	C/6743421-6743702,6743085-6743252,6742670-6742883,6741954-6742172,6741486-6741778,6741163-6741312	AT5G19950.3  CDS  gene_syn F28I16.100, F28I16_100  go_component mitochondrion|GO:0005739|14671022|IDA  product unknown protein  note unknown protein; LOCATED IN: mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1767 (InterPro:IPR013894); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G63540.2); Has 452 Blast hits to 401 proteins in 107 species: Archae - 0; Bacteria - 20; Metazoa - 224; Fungi - 49; Plants - 70; Viruses - 3; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT5G19950.3p  transcript_id AT5G19950.3  protein_id AT5G19950.3p  transcript_id AT5G19950.3  
At5g19950	chr5:006743421	0.0	C/6743421-6743702,6743085-6743252,6742670-6742883,6741954-6742172,6741486-6741778,6741163-6741318	AT5G19950.1  CDS  gene_syn F28I16.100, F28I16_100  go_component mitochondrion|GO:0005739|14671022|IDA  product unknown protein  note unknown protein; LOCATED IN: mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1767 (InterPro:IPR013894); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G63540.2); Has 462 Blast hits to 405 proteins in 107 species: Archae - 0; Bacteria - 22; Metazoa - 231; Fungi - 48; Plants - 71; Viruses - 3; Other Eukaryotes - 87 (source: NCBI BLink).  protein_id AT5G19950.1p  transcript_id AT5G19950.1  protein_id AT5G19950.1p  transcript_id AT5G19950.1  
At5g19950	chr5:006743421	0.0	C/6743421-6743702,6743085-6743252,6742670-6742883,6741954-6742172,6741486-6741778,6741163-6741318	AT5G19950.2  CDS  gene_syn F28I16.100, F28I16_100  go_component mitochondrion|GO:0005739|14671022|IDA  product unknown protein  note unknown protein; LOCATED IN: mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1767 (InterPro:IPR013894); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G63540.2); Has 462 Blast hits to 405 proteins in 107 species: Archae - 0; Bacteria - 22; Metazoa - 231; Fungi - 48; Plants - 71; Viruses - 3; Other Eukaryotes - 87 (source: NCBI BLink).  protein_id AT5G19950.2p  transcript_id AT5G19950.2  protein_id AT5G19950.2p  transcript_id AT5G19950.2  
At5g19960	chr5:006744029	0.0	W/6744029-6744139,6744381-6744479,6744572-6744984,6745332-6745392,6745463-6745516,6745615-6745683,6745759-6745824,6745906-6745974,6746062-6746133	AT5G19960.1  CDS  gene_syn F28I16.110, F28I16_110  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: GR-RBP8; RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT4G39260.2); Has 17397 Blast hits to 14212 proteins in 592 species: Archae - 12; Bacteria - 964; Metazoa - 9774; Fungi - 1887; Plants - 2774; Viruses - 3; Other Eukaryotes - 1983 (source: NCBI BLink).  protein_id AT5G19960.1p  transcript_id AT5G19960.1  protein_id AT5G19960.1p  transcript_id AT5G19960.1  
At5g19970	chr5:006747550	0.0	W/6747550-6748641	AT5G19970.1  CDS  gene_syn F28I16.120, F28I16_120  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; Has 8 Blast hits to 8 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G19970.1p  transcript_id AT5G19970.1  protein_id AT5G19970.1p  transcript_id AT5G19970.1  
At5g19980	chr5:006749907	0.0	C/6749907-6750932	AT5G19980.1  CDS  gene_syn F28I16.130, F28I16_130  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||ISS  product integral membrane family protein  note integral membrane family protein; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UAA transporter (InterPro:IPR013657); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT1G76340.1); Has 1019 Blast hits to 1017 proteins in 175 species: Archae - 0; Bacteria - 2; Metazoa - 282; Fungi - 207; Plants - 428; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).  protein_id AT5G19980.1p  transcript_id AT5G19980.1  protein_id AT5G19980.1p  transcript_id AT5G19980.1  
At5g19990	chr5:006752144	0.0	W/6752144-6752345,6752854-6752951,6753029-6753253,6753369-6753431,6753516-6753679,6754020-6754176,6754288-6754386,6754584-6754694,6754778-6754918	AT5G19990.1  CDS  gene_syn 26S PROTEASOME AAA-ATPASE SUBUNIT, ATSUG1, F28I16.140, F28I16_140, REGULATORY PARTICLE TRIPLE-A ATPASE 6A, RPT6A  gene RPT6A  function 26S proteasome AAA-ATPase subunit  go_component plasma membrane|GO:0005886|17317660|IDA  go_component nucleus|GO:0005634|11742986|TAS  go_component proteasome regulatory particle, base subcomplex|GO:0008540|9741626|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_function ATPase activity|GO:0016887|10417703|IGI  go_function ATPase activity|GO:0016887||ISS  product RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A); ATPase  note REGULATORY PARTICLE TRIPLE-A ATPASE 6A (RPT6A); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, nucleus, plasma membrane; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: 26S proteasome AAA-ATPase subunit, putative (TAIR:AT5G20000.1); Has 26703 Blast hits to 25048 proteins in 1849 species: Archae - 858; Bacteria - 9115; Metazoa - 4277; Fungi - 2494; Plants - 1694; Viruses - 31; Other Eukaryotes - 8234 (source: NCBI BLink).  protein_id AT5G19990.1p  transcript_id AT5G19990.1  protein_id AT5G19990.1p  transcript_id AT5G19990.1  
At5g20000	chr5:006756915	0.0	W/6756915-6757116,6757500-6757597,6757690-6757914,6758002-6758064,6758147-6758310,6758669-6758825,6758937-6759035,6759220-6759330,6759410-6759550	AT5G20000.1  CDS  gene_syn F28I16.150, F28I16_150  go_process protein catabolic process|GO:0030163||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function hydrolase activity|GO:0016787||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component nucleus|GO:0005634|11742986|TAS  go_component proteasome regulatory particle, base subcomplex|GO:0008540||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_function ATPase activity|GO:0016887||ISS  product 26S proteasome AAA-ATPase subunit, putative  note 26S proteasome AAA-ATPase subunit, putative; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, nucleus; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A); ATPase (TAIR:AT5G19990.1); Has 26652 Blast hits to 24996 proteins in 1846 species: Archae - 858; Bacteria - 9083; Metazoa - 4251; Fungi - 2494; Plants - 1695; Viruses - 31; Other Eukaryotes - 8240 (source: NCBI BLink).  protein_id AT5G20000.1p  transcript_id AT5G20000.1  protein_id AT5G20000.1p  transcript_id AT5G20000.1  
At5g20010	chr5:006760364	0.0	W/6760364-6760366,6760518-6760587,6760810-6760866,6760954-6761071,6761330-6761747	AT5G20010.1  CDS  gene_syn ARABIDOPSIS THALIANA RAS-RELATED NUCLEAR PROTEIN, ATRAN1, F28I16.160, F28I16_160, RAN-1, RAN1, RAS-RELATED NUCLEAR PROTEIN  gene RAN-1  function A member of RAN GTPase gene family. Encodes a small soluble GTP-binding protein. Likely to be involved in nuclear translocation of proteins. May also be involved in cell cycle progression.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process protein import into nucleus|GO:0006606|9025305|TAS  go_function GTPase activity|GO:0003924|9025305|ISS  go_function protein binding|GO:0005515|9025305|IPI  go_function GTP binding|GO:0005525|9025305|ISS  go_function GTP binding|GO:0005525||ISS  product RAN-1; GTP binding / GTPase/ protein binding  note RAN-1; FUNCTIONS IN: protein binding, GTP binding, GTPase activity; INVOLVED IN: response to cadmium ion, response to salt stress, protein import into nucleus; LOCATED IN: apoplast, cell wall, plasma membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), GTP-binding nuclear protein, Ran, conserved site (InterPro:IPR018210), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753); BEST Arabidopsis thaliana protein match is: RAN2; GTP binding / GTPase/ protein binding (TAIR:AT5G20020.1); Has 18881 Blast hits to 18863 proteins in 569 species: Archae - 11; Bacteria - 89; Metazoa - 10276; Fungi - 2245; Plants - 1713; Viruses - 19; Other Eukaryotes - 4528 (source: NCBI BLink).  protein_id AT5G20010.1p  transcript_id AT5G20010.1  protein_id AT5G20010.1p  transcript_id AT5G20010.1  
At5g20020	chr5:006762817	0.0	W/6762817-6762819,6762946-6763015,6763356-6763412,6763494-6763611,6763964-6764381	AT5G20020.1  CDS  gene_syn F28I16.170, F28I16_170, RAN2  gene RAN2  function A member of RAN GTPase gene family. Encodes a small soluble GTP-binding protein. Likely to be involved in nuclear translocation of proteins. May also be involved in cell cycle progression.  go_component nucleolus|GO:0005730|15496452|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process protein import into nucleus|GO:0006606|9025305|TAS  go_function GTPase activity|GO:0003924|9025305|ISS  go_function protein binding|GO:0005515|9025305|IPI  go_function GTP binding|GO:0005525|9025305|ISS  go_function GTP binding|GO:0005525||ISS  product RAN2; GTP binding / GTPase/ protein binding  note RAN2; FUNCTIONS IN: protein binding, GTP binding, GTPase activity; INVOLVED IN: response to cadmium ion, protein import into nucleus; LOCATED IN: nucleolus, nucleus, cytoplasm; EXPRESSED IN: cotyledon, guard cell, cultured cell; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), GTP-binding nuclear protein, Ran, conserved site (InterPro:IPR018210), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753); BEST Arabidopsis thaliana protein match is: RAN-1; GTP binding / GTPase/ protein binding (TAIR:AT5G20010.1); Has 18889 Blast hits to 18871 proteins in 569 species: Archae - 11; Bacteria - 89; Metazoa - 10278; Fungi - 2249; Plants - 1713; Viruses - 19; Other Eukaryotes - 4530 (source: NCBI BLink).  protein_id AT5G20020.1p  transcript_id AT5G20020.1  protein_id AT5G20020.1p  transcript_id AT5G20020.1  
At5g20030	chr5:006765653	0.0	C/6765653-6766036,6764971-6765567	AT5G20030.1  CDS  gene_syn F28I16.180, F28I16_180  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product agenet domain-containing protein  note agenet domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ENT (InterPro:IPR005491), Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein (TAIR:AT4G32440.2); Has 153 Blast hits to 142 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G20030.1p  transcript_id AT5G20030.1  protein_id AT5G20030.1p  transcript_id AT5G20030.1  
At5g20040	chr5:006770726	0.0	C/6770726-6770980,6770500-6770553,6770352-6770394,6770139-6770247,6769826-6770024,6769453-6769678,6769129-6769223,6768636-6768730,6768355-6768430,6768129-6768268,6767939-6768026	AT5G20040.2  CDS  gene_syn ATIPT9, F28I16.190, F28I16_190  gene ATIPT9  function Encodes tRNA isopentenyltransferase AtIPT9.  go_function tRNA isopentenyltransferase activity|GO:0004811||IEA  go_function ATP binding|GO:0005524||IEA  go_process tRNA processing|GO:0008033||ISS  go_process cytokinin biosynthetic process|GO:0009691|17062755|IGI  go_function tRNA isopentenyltransferase activity|GO:0004811||ISS  go_function ATP binding|GO:0005524||ISS  product ATIPT9; ATP binding / tRNA isopentenyltransferase  note ATIPT9; FUNCTIONS IN: tRNA isopentenyltransferase activity, ATP binding; INVOLVED IN: tRNA processing, cytokinin biosynthetic process; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA delta(2)-isopentenylpyrophosphate transferase (InterPro:IPR018022), tRNA isopentenyltransferase (InterPro:IPR002627); BEST Arabidopsis thaliana protein match is: IPT5; ATP binding / tRNA isopentenyltransferase/ transferase, transferring alkyl or aryl (other than methyl) groups (TAIR:AT5G19040.1); Has 5574 Blast hits to 5565 proteins in 1464 species: Archae - 0; Bacteria - 2710; Metazoa - 98; Fungi - 84; Plants - 173; Viruses - 0; Other Eukaryotes - 2509 (source: NCBI BLink).  protein_id AT5G20040.2p  transcript_id AT5G20040.2  protein_id AT5G20040.2p  transcript_id AT5G20040.2  
At5g20040	chr5:006770726	0.0	C/6770726-6770980,6770500-6770553,6770352-6770394,6770139-6770247,6769826-6770024,6769453-6769678,6769129-6769223,6768636-6768730,6768355-6768430,6768129-6768268,6767939-6768038	AT5G20040.1  CDS  gene_syn ATIPT9, F28I16.190, F28I16_190  gene ATIPT9  function Encodes tRNA isopentenyltransferase AtIPT9.  go_function tRNA isopentenyltransferase activity|GO:0004811||IEA  go_function ATP binding|GO:0005524||IEA  go_process tRNA processing|GO:0008033||ISS  go_process cytokinin biosynthetic process|GO:0009691|17062755|IGI  go_function tRNA isopentenyltransferase activity|GO:0004811||ISS  go_function ATP binding|GO:0005524||ISS  product ATIPT9; ATP binding / tRNA isopentenyltransferase  note ATIPT9; FUNCTIONS IN: tRNA isopentenyltransferase activity, ATP binding; INVOLVED IN: tRNA processing, cytokinin biosynthetic process; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA delta(2)-isopentenylpyrophosphate transferase (InterPro:IPR018022), tRNA isopentenyltransferase (InterPro:IPR002627); BEST Arabidopsis thaliana protein match is: IPT5; ATP binding / tRNA isopentenyltransferase/ transferase, transferring alkyl or aryl (other than methyl) groups (TAIR:AT5G19040.1); Has 5574 Blast hits to 5565 proteins in 1464 species: Archae - 0; Bacteria - 2710; Metazoa - 98; Fungi - 84; Plants - 173; Viruses - 0; Other Eukaryotes - 2509 (source: NCBI BLink).  protein_id AT5G20040.1p  transcript_id AT5G20040.1  protein_id AT5G20040.1p  transcript_id AT5G20040.1  
At5g20045	chr5:006771924	0.0	C/6771924-6772157	AT5G20045.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G20045.1p  transcript_id AT5G20045.1  protein_id AT5G20045.1p  transcript_id AT5G20045.1  
At5g20050	chr5:006774381	0.0	W/6774381-6775739	AT5G20050.1  CDS  gene_syn F28I16.200, F28I16_200  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: SD2-5 (S-DOMAIN-2 5); carbohydrate binding / kinase/ protein kinase (TAIR:AT4G32300.1); Has 82956 Blast hits to 82129 proteins in 3450 species: Archae - 44; Bacteria - 7265; Metazoa - 36757; Fungi - 5891; Plants - 18521; Viruses - 375; Other Eukaryotes - 14103 (source: NCBI BLink).  protein_id AT5G20050.1p  transcript_id AT5G20050.1  protein_id AT5G20050.1p  transcript_id AT5G20050.1  
At5g20060	chr5:006776800	0.0	W/6776800-6776830,6776919-6777030,6777242-6777278,6777373-6777442,6778062-6778166,6778711-6778861,6778945-6779024,6779275-6779447	AT5G20060.1  CDS  gene_syn F28I16.210, F28I16_210  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function carboxylesterase activity|GO:0004091||ISS  product phospholipase/carboxylesterase family protein  note phospholipase/carboxylesterase family protein; FUNCTIONS IN: hydrolase activity, carboxylesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase/carboxylesterase (InterPro:IPR003140); BEST Arabidopsis thaliana protein match is: phospholipase/carboxylesterase family protein (TAIR:AT1G52700.1); Has 1596 Blast hits to 1590 proteins in 465 species: Archae - 2; Bacteria - 608; Metazoa - 304; Fungi - 165; Plants - 109; Viruses - 0; Other Eukaryotes - 408 (source: NCBI BLink).  protein_id AT5G20060.1p  transcript_id AT5G20060.1  protein_id AT5G20060.1p  transcript_id AT5G20060.1  
At5g20060	chr5:006776800	0.0	W/6776800-6776830,6776919-6777030,6777242-6777278,6777373-6777442,6778062-6778166,6778711-6778861,6778945-6779024,6779275-6779447	AT5G20060.2  CDS  gene_syn F28I16.210, F28I16_210  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function carboxylesterase activity|GO:0004091||ISS  product phospholipase/carboxylesterase family protein  note phospholipase/carboxylesterase family protein; FUNCTIONS IN: hydrolase activity, carboxylesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase/carboxylesterase (InterPro:IPR003140); BEST Arabidopsis thaliana protein match is: phospholipase/carboxylesterase family protein (TAIR:AT1G52700.1); Has 1596 Blast hits to 1590 proteins in 465 species: Archae - 2; Bacteria - 608; Metazoa - 304; Fungi - 165; Plants - 109; Viruses - 0; Other Eukaryotes - 408 (source: NCBI BLink).  protein_id AT5G20060.2p  transcript_id AT5G20060.2  protein_id AT5G20060.2p  transcript_id AT5G20060.2  
At5g20060	chr5:006776800	0.0	W/6776800-6776830,6776919-6777030,6777242-6777278,6777373-6777442,6778062-6778166,6778711-6778861,6778945-6779024,6779275-6779447	AT5G20060.3  CDS  gene_syn F28I16.210, F28I16_210  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function carboxylesterase activity|GO:0004091||ISS  product phospholipase/carboxylesterase family protein  note phospholipase/carboxylesterase family protein; FUNCTIONS IN: hydrolase activity, carboxylesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase/carboxylesterase (InterPro:IPR003140); BEST Arabidopsis thaliana protein match is: phospholipase/carboxylesterase family protein (TAIR:AT1G52700.1); Has 1596 Blast hits to 1590 proteins in 465 species: Archae - 2; Bacteria - 608; Metazoa - 304; Fungi - 165; Plants - 109; Viruses - 0; Other Eukaryotes - 408 (source: NCBI BLink).  protein_id AT5G20060.3p  transcript_id AT5G20060.3  protein_id AT5G20060.3p  transcript_id AT5G20060.3  
At5g20070	chr5:006779893	0.0	W/6779893-6780486,6780751-6780891,6780981-6781085,6781239-6781338,6781834-6781926,6782025-6782308	AT5G20070.1  CDS  gene_syn ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 19, ATNUDT19, ATNUDX19, F28I16.220, F28I16_220  gene ATNUDX19  go_function hydrolase activity|GO:0016787||IEA  go_function metal ion binding|GO:0046872||IEA  go_component chloroplast|GO:0009507|18815383|IDA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product ATNUDX19 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 19); hydrolase/ metal ion binding  note ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 19 (ATNUDX19); FUNCTIONS IN: hydrolase activity, metal ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc ribbon, NADH pyrophosphatase (InterPro:IPR015376), NUDIX (InterPro:IPR015797), NUDIX hydrolase, core (InterPro:IPR000086); Has 3177 Blast hits to 3177 proteins in 828 species: Archae - 24; Bacteria - 2086; Metazoa - 110; Fungi - 80; Plants - 32; Viruses - 2; Other Eukaryotes - 843 (source: NCBI BLink).  protein_id AT5G20070.1p  transcript_id AT5G20070.1  protein_id AT5G20070.1p  transcript_id AT5G20070.1  
At5g20080	chr5:006782708	0.0	W/6782708-6782878,6783091-6783133,6783255-6783330,6783656-6783715,6783836-6783886,6784365-6784419,6784560-6784630,6784723-6784774,6785109-6785186,6785372-6785461,6785561-6785674,6785845-6785913,6786304-6786360	AT5G20080.1  CDS  gene_syn F28I16.230, F28I16_230  go_process response to salt stress|GO:0009651|17916636|IEP  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_function cytochrome-b5 reductase activity|GO:0004128||ISS  product NADH-cytochrome b5 reductase, putative  note NADH-cytochrome b5 reductase, putative; FUNCTIONS IN: cytochrome-b5 reductase activity, electron carrier activity, oxidoreductase activity; INVOLVED IN: response to salt stress; LOCATED IN: mitochondrion, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Oxidoreductase FAD-binding region (InterPro:IPR008333), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), NADH:cytochrome b5 reductase (CBR) (InterPro:IPR001834); BEST Arabidopsis thaliana protein match is: ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1); cytochrome-b5 reductase (TAIR:AT5G17770.1); Has 6567 Blast hits to 6567 proteins in 1194 species: Archae - 47; Bacteria - 4114; Metazoa - 446; Fungi - 545; Plants - 351; Viruses - 0; Other Eukaryotes - 1064 (source: NCBI BLink).  protein_id AT5G20080.1p  transcript_id AT5G20080.1  protein_id AT5G20080.1p  transcript_id AT5G20080.1  
At5g20090	chr5:006787902	0.0	C/6787902-6788000,6787762-6787816,6787543-6787682	AT5G20090.3  CDS  gene_syn F28I16.240, F28I16_240  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0041 (InterPro:IPR005336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22310.1); Has 659 Blast hits to 658 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 314; Fungi - 177; Plants - 98; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT5G20090.3p  transcript_id AT5G20090.3  protein_id AT5G20090.3p  transcript_id AT5G20090.3  
At5g20090	chr5:006787902	0.0	C/6787902-6788000,6787762-6787816,6787547-6787682,6787246-6787288	AT5G20090.1  CDS  gene_syn F28I16.240, F28I16_240  go_component mitochondrion|GO:0005739|15276431|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0041 (InterPro:IPR005336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22310.1); Has 657 Blast hits to 656 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 314; Fungi - 175; Plants - 98; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT5G20090.1p  transcript_id AT5G20090.1  protein_id AT5G20090.1p  transcript_id AT5G20090.1  
At5g20090	chr5:006787902	0.0	C/6787902-6788000,6787762-6787816,6787547-6787682,6787246-6787288	AT5G20090.2  CDS  gene_syn F28I16.240, F28I16_240  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0041 (InterPro:IPR005336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22310.1); Has 657 Blast hits to 656 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 314; Fungi - 175; Plants - 98; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT5G20090.2p  transcript_id AT5G20090.2  protein_id AT5G20090.2p  transcript_id AT5G20090.2  
At5g20100	chr5:006790153	0.0	W/6790153-6790494	AT5G20100.1  CDS  gene_syn F28I16.250, F28I16_250  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80180.1); Has 48 Blast hits to 48 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G20100.1p  transcript_id AT5G20100.1  protein_id AT5G20100.1p  transcript_id AT5G20100.1  
At5g20110	chr5:006792783	0.0	C/6792783-6793253,6791542-6791700	AT5G20110.1  CDS  gene_syn F28I16.260, F28I16_260  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based process|GO:0007017||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_component microtubule associated complex|GO:0005875||ISS  go_process microtubule-based process|GO:0007017||ISS  go_function microtubule motor activity|GO:0003777||ISS  product dynein light chain, putative  note dynein light chain, putative; FUNCTIONS IN: microtubule motor activity; INVOLVED IN: microtubule-based process; LOCATED IN: microtubule associated complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Dynein light chain, type 1 and 2 (InterPro:IPR001372); BEST Arabidopsis thaliana protein match is: dynein light chain type 1 family protein (TAIR:AT1G23220.1); Has 816 Blast hits to 816 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 422; Fungi - 71; Plants - 123; Viruses - 0; Other Eukaryotes - 200 (source: NCBI BLink).  protein_id AT5G20110.1p  transcript_id AT5G20110.1  protein_id AT5G20110.1p  transcript_id AT5G20110.1  
At5g20120	chr5:006795889	0.0	W/6795889-6796148,6796441-6796605,6796688-6796739,6796832-6796921	AT5G20120.1  CDS  gene_syn F5O24.10, F5O24_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 36 Blast hits to 36 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT5G20120.1p  transcript_id AT5G20120.1  protein_id AT5G20120.1p  transcript_id AT5G20120.1  
At5g20130	chr5:006797485	0.0	W/6797485-6797655,6798178-6798399,6798485-6798700	AT5G20130.1  CDS  gene_syn F5O24.20, F5O24_20  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 68 Blast hits to 68 proteins in 22 species: Archae - 0; Bacteria - 4; Metazoa - 27; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G20130.1p  transcript_id AT5G20130.1  protein_id AT5G20130.1p  transcript_id AT5G20130.1  
At5g20140	chr5:006800512	0.0	C/6800512-6800892,6800295-6800432,6800150-6800218,6799996-6800067,6799828-6799910,6799592-6799726,6799280-6799493,6799047-6799091	AT5G20140.1  CDS  gene_syn F5O24.30, F5O24_30  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process biological_process|GO:0008150||ND  go_function binding|GO:0005488||ISS  product SOUL heme-binding family protein  note SOUL heme-binding family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2358 (InterPro:IPR018790), SOUL haem-binding protein (InterPro:IPR006917); BEST Arabidopsis thaliana protein match is: SOUL heme-binding family protein (TAIR:AT3G10130.1); Has 1348 Blast hits to 1346 proteins in 137 species: Archae - 10; Bacteria - 204; Metazoa - 88; Fungi - 0; Plants - 111; Viruses - 0; Other Eukaryotes - 935 (source: NCBI BLink).  protein_id AT5G20140.1p  transcript_id AT5G20140.1  protein_id AT5G20140.1p  transcript_id AT5G20140.1  
At5g20150	chr5:006802429	0.0	W/6802429-6802698,6802780-6802906,6802994-6803367	AT5G20150.1  CDS  gene_syn ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, ATSPX1, F5O24.40, F5O24_40, SPX DOMAIN GENE 1, SPX1  gene SPX1  go_component nucleus|GO:0005634|18315545|IDA  go_process cellular response to phosphate starvation|GO:0016036|18315545|IEP  go_process positive regulation of cellular response to phosphate starvation|GO:0080040|18315545|IMP  go_function molecular_function|GO:0003674||ND  product SPX1 (SPX DOMAIN GENE 1)  note SPX DOMAIN GENE 1 (SPX1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: SPX2 (SPX DOMAIN GENE 2) (TAIR:AT2G26660.1); Has 758 Blast hits to 753 proteins in 146 species: Archae - 3; Bacteria - 4; Metazoa - 221; Fungi - 311; Plants - 167; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT5G20150.1p  transcript_id AT5G20150.1  protein_id AT5G20150.1p  transcript_id AT5G20150.1  
At5g20160	chr5:006805100	0.0	C/6805100-6805102,6804653-6804979	AT5G20160.3  CDS  gene_syn F5O24.50, F5O24_50  go_function RNA binding|GO:0003723||ISS  product ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein  note ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; FUNCTIONS IN: RNA binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group-like nuclear protein (InterPro:IPR002415), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038); BEST Arabidopsis thaliana protein match is: ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (TAIR:AT4G22380.1).  protein_id AT5G20160.3p  transcript_id AT5G20160.3  protein_id AT5G20160.3p  transcript_id AT5G20160.3  
At5g20160	chr5:006805100	0.0	C/6805100-6805102,6804659-6804979,6804201-6804332,6804075-6804101	AT5G20160.2  CDS  gene_syn F5O24.50, F5O24_50  go_component nucleolus|GO:0005730|15496452|IDA  go_process ribosome biogenesis|GO:0042254||IEA  go_function RNA binding|GO:0003723||ISS  product ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein  note ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; FUNCTIONS IN: RNA binding; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group-like nuclear protein (InterPro:IPR002415), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038), Ribosomal protein L7Ae conserved site (InterPro:IPR004037); BEST Arabidopsis thaliana protein match is: ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (TAIR:AT4G22380.1); Has 1076 Blast hits to 1076 proteins in 269 species: Archae - 226; Bacteria - 0; Metazoa - 321; Fungi - 181; Plants - 101; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).  protein_id AT5G20160.2p  transcript_id AT5G20160.2  protein_id AT5G20160.2p  transcript_id AT5G20160.2  
At5g20160	chr5:006805100	0.0	C/6805100-6805102,6804859-6804979,6804659-6804762,6804201-6804332,6804075-6804101	AT5G20160.1  CDS  gene_syn F5O24.50, F5O24_50  go_component nucleolus|GO:0005730|15496452|IDA  go_process ribosome biogenesis|GO:0042254||IEA  go_function RNA binding|GO:0003723||ISS  product ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein  note ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; FUNCTIONS IN: RNA binding; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group-like nuclear protein (InterPro:IPR002415), Ribosomal protein L7A/RS6 family (InterPro:IPR018492), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038), Ribosomal protein L7Ae conserved site (InterPro:IPR004037); BEST Arabidopsis thaliana protein match is: ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (TAIR:AT4G22380.1); Has 1361 Blast hits to 1361 proteins in 295 species: Archae - 226; Bacteria - 7; Metazoa - 464; Fungi - 191; Plants - 162; Viruses - 0; Other Eukaryotes - 311 (source: NCBI BLink).  protein_id AT5G20160.1p  transcript_id AT5G20160.1  protein_id AT5G20160.1p  transcript_id AT5G20160.1  
At5g20165	chr5:006806728	0.0	C/6806728-6806730,6806532-6806638,6806217-6806251,6805803-6805870	AT5G20165.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1242 (InterPro:IPR009653); Has 273 Blast hits to 273 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 172; Fungi - 45; Plants - 20; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT5G20165.1p  transcript_id AT5G20165.1  protein_id AT5G20165.1p  transcript_id AT5G20165.1  
At5g20165	chr5:006806728	0.0	C/6806728-6806730,6806532-6806638,6806217-6806251,6805963-6806023,6805870-6805870	AT5G20165.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1242 (InterPro:IPR009653); Has 182 Blast hits to 182 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 107; Fungi - 41; Plants - 20; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT5G20165.2p  transcript_id AT5G20165.2  protein_id AT5G20165.2p  transcript_id AT5G20165.2  
At5g20170	chr5:006810641	0.0	C/6810641-6810729,6810348-6810552,6810074-6810187,6809784-6809869,6808905-6809292,6808376-6808822,6807952-6808266,6807554-6807871	AT5G20170.1  CDS  gene_syn F5O24.60, F5O24_60  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 53 Blast hits to 53 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 3; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G20170.1p  transcript_id AT5G20170.1  protein_id AT5G20170.1p  transcript_id AT5G20170.1  
At5g20180	chr5:006811312	0.0	W/6811312-6811466,6811754-6811910	AT5G20180.1  CDS  gene_syn F5O24.70, F5O24_70  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L36 family protein  note ribosomal protein L36 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L36 (InterPro:IPR000473); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATCG00760.1); Has 2593 Blast hits to 2593 proteins in 1117 species: Archae - 0; Bacteria - 1934; Metazoa - 39; Fungi - 51; Plants - 452; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT5G20180.1p  transcript_id AT5G20180.1  protein_id AT5G20180.1p  transcript_id AT5G20180.1  
At5g20180	chr5:006811312	0.0	W/6811312-6811466,6811754-6811910	AT5G20180.2  CDS  gene_syn F5O24.70, F5O24_70  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L36 family protein  note ribosomal protein L36 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L36 (InterPro:IPR000473); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATCG00760.1); Has 2593 Blast hits to 2593 proteins in 1117 species: Archae - 0; Bacteria - 1934; Metazoa - 39; Fungi - 51; Plants - 452; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT5G20180.2p  transcript_id AT5G20180.2  protein_id AT5G20180.2p  transcript_id AT5G20180.2  
At5g20181	chr5:006812338	0.0	W/6812338-6812559	AT5G20181.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G20181.1p  transcript_id AT5G20181.1  protein_id AT5G20181.1p  transcript_id AT5G20181.1  
At5g20190	chr5:006814093	0.0	W/6814093-6814641,6814736-6814908,6815021-6815171	AT5G20190.1  CDS  gene_syn F5O24.80, F5O24_80  go_component chloroplast|GO:0009507||IEA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT1G80130.1); Has 303 Blast hits to 195 proteins in 27 species: Archae - 0; Bacteria - 78; Metazoa - 7; Fungi - 10; Plants - 171; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT5G20190.1p  transcript_id AT5G20190.1  protein_id AT5G20190.1p  transcript_id AT5G20190.1  
At5g20200	chr5:006816776	0.0	W/6816776-6817070,6817641-6817696,6818235-6818398,6818624-6818831,6819136-6819459,6819537-6819620,6820220-6820858,6821102-6821620	AT5G20200.1  CDS  gene_syn F5O24.90, F5O24_90  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product nucleoporin-related  note nucleoporin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G10650.1); Has 1377 Blast hits to 494 proteins in 126 species: Archae - 0; Bacteria - 122; Metazoa - 262; Fungi - 164; Plants - 35; Viruses - 0; Other Eukaryotes - 794 (source: NCBI BLink).  protein_id AT5G20200.1p  transcript_id AT5G20200.1  protein_id AT5G20200.1p  transcript_id AT5G20200.1  
At5g20220	chr5:006822208	0.0	W/6822208-6822351,6822466-6822521,6824184-6824346,6824431-6824519,6824598-6824730,6824816-6824908,6825008-6825110,6825371-6825771	AT5G20220.1  CDS  gene_syn F5O24.110, F5O24_110  go_process protein folding|GO:0006457||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_function nucleic acid binding|GO:0003676||ISS  product zinc knuckle (CCHC-type) family protein  note zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding, zinc ion binding, nucleic acid binding; INVOLVED IN: protein folding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Heat shock protein DnaJ, cysteine-rich region (InterPro:IPR001305); Has 2110 Blast hits to 1542 proteins in 192 species: Archae - 0; Bacteria - 8; Metazoa - 481; Fungi - 459; Plants - 190; Viruses - 714; Other Eukaryotes - 258 (source: NCBI BLink).  protein_id AT5G20220.1p  transcript_id AT5G20220.1  protein_id AT5G20220.1p  transcript_id AT5G20220.1  
At5g20220	chr5:006822208	0.0	W/6822208-6822351,6822466-6822521,6824184-6824346,6824431-6824519,6824598-6824730,6824816-6824908,6825008-6825110,6825371-6825771	AT5G20220.2  CDS  gene_syn F5O24.110, F5O24_110  go_process protein folding|GO:0006457||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_function nucleic acid binding|GO:0003676||ISS  product zinc knuckle (CCHC-type) family protein  note zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding, zinc ion binding, nucleic acid binding; INVOLVED IN: protein folding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Heat shock protein DnaJ, cysteine-rich region (InterPro:IPR001305); Has 2110 Blast hits to 1542 proteins in 192 species: Archae - 0; Bacteria - 8; Metazoa - 481; Fungi - 459; Plants - 190; Viruses - 714; Other Eukaryotes - 258 (source: NCBI BLink).  protein_id AT5G20220.2p  transcript_id AT5G20220.2  protein_id AT5G20220.2p  transcript_id AT5G20220.2  
At5g20225	chr5:006825261	0.0	C/6825261-6825940	AT5G20225.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT5G20220  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G20225.1  
At5g20230	chr5:006826626	0.0	W/6826626-6826797,6826990-6827408	AT5G20230.1  CDS  gene_syn ARABIDOPSIS BLUE-COPPER-BINDING PROTEIN, ATBCB, BCB, BLUE COPPER BINDING PROTEIN, F5O24.120, F5O24_120  gene ATBCB  function Al-stress-induced gene  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component anchored to plasma membrane|GO:0046658|12805588|IDA  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process response to oxidative stress|GO:0006979|10712528|TAS  go_process response to wounding|GO:0009611||IEP  go_process response to absence of light|GO:0009646|8294044|IEP  go_process response to salt stress|GO:0009651|11351099|IEP  go_process aluminum ion transport|GO:0015690|11706174|IMP  go_function copper ion binding|GO:0005507||ISS  product ATBCB (ARABIDOPSIS BLUE-COPPER-BINDING PROTEIN); copper ion binding / electron carrier  note ARABIDOPSIS BLUE-COPPER-BINDING PROTEIN (ATBCB); FUNCTIONS IN: electron carrier activity, copper ion binding; INVOLVED IN: response to oxidative stress, response to salt stress, response to wounding, aluminum ion transport, response to absence of light; LOCATED IN: anchored to plasma membrane, plasma membrane, vacuole, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972), Blue (type 1) copper domain (InterPro:IPR000923); BEST Arabidopsis thaliana protein match is: UCC3 (UCLACYANIN 3); copper ion binding / electron carrier (TAIR:AT3G60280.1); Has 2079 Blast hits to 1297 proteins in 147 species: Archae - 2; Bacteria - 806; Metazoa - 51; Fungi - 76; Plants - 798; Viruses - 10; Other Eukaryotes - 336 (source: NCBI BLink).  protein_id AT5G20230.1p  transcript_id AT5G20230.1  protein_id AT5G20230.1p  transcript_id AT5G20230.1  
At5g20240	chr5:006829203	0.0	W/6829203-6829457,6830455-6830516,6830637-6830736,6830809-6830838,6830927-6830971,6831074-6831208	AT5G20240.1  CDS  gene_syn F5O24.130, F5O24_130, FLORAL HOMEOTIC PROTEIN PISTILLATA, PI, PISTILLATA  gene PI  function Floral homeotic gene encoding a MADS domain transcription factor. Required for the specification of petal and stamen identities.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634|8698240|IDA  go_component cytoplasm|GO:0005737|8698240|IDA  go_function DNA binding|GO:0003677|16640596|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product PI (PISTILLATA); DNA binding / transcription factor  note PISTILLATA (PI); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: TT16 (TRANSPARENT TESTA16); transcription factor (TAIR:AT5G23260.1); Has 5083 Blast hits to 5082 proteins in 695 species: Archae - 0; Bacteria - 3; Metazoa - 549; Fungi - 201; Plants - 4274; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT5G20240.1p  transcript_id AT5G20240.1  protein_id AT5G20240.1p  transcript_id AT5G20240.1  
At5g20250	chr5:006834207	0.0	W/6834207-6835720,6835818-6835952,6836035-6836635	AT5G20250.1  CDS  gene_syn DARK INDUCIBLE 10, DIN10, F5O24.140, F5O24_140  gene DIN10  function encodes a member of glycosyl hydrolase family 36. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene s expression pattern is responding to the level of sugar in the cell.  go_component chloroplast|GO:0009507|18431481|IDA  go_process aging|GO:0007568|11240919|IEP  go_process response to light stimulus|GO:0009416|11240919|IEP  go_process response to sucrose stimulus|GO:0009744|11240919|IEP  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product DIN10 (DARK INDUCIBLE 10); hydrolase, hydrolyzing O-glycosyl compounds  note DARK INDUCIBLE 10 (DIN10); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to light stimulus, aging, response to sucrose stimulus; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Raffinose synthase (InterPro:IPR008811); BEST Arabidopsis thaliana protein match is: AtSIP2 (Arabidopsis thaliana seed imbibition 2); hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT3G57520.1); Has 285 Blast hits to 268 proteins in 85 species: Archae - 7; Bacteria - 47; Metazoa - 0; Fungi - 51; Plants - 174; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G20250.1p  transcript_id AT5G20250.1  protein_id AT5G20250.1p  transcript_id AT5G20250.1  
At5g20250	chr5:006834207	0.0	W/6834207-6835720,6835818-6835952,6836035-6836635	AT5G20250.2  CDS  gene_syn DARK INDUCIBLE 10, DIN10, F5O24.140, F5O24_140  gene DIN10  function encodes a member of glycosyl hydrolase family 36. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene s expression pattern is responding to the level of sugar in the cell.  go_component chloroplast|GO:0009507|18431481|IDA  go_process aging|GO:0007568|11240919|IEP  go_process response to light stimulus|GO:0009416|11240919|IEP  go_process response to sucrose stimulus|GO:0009744|11240919|IEP  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product DIN10 (DARK INDUCIBLE 10); hydrolase, hydrolyzing O-glycosyl compounds  note DARK INDUCIBLE 10 (DIN10); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to light stimulus, aging, response to sucrose stimulus; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Raffinose synthase (InterPro:IPR008811); BEST Arabidopsis thaliana protein match is: AtSIP2 (Arabidopsis thaliana seed imbibition 2); hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT3G57520.1); Has 285 Blast hits to 268 proteins in 85 species: Archae - 7; Bacteria - 47; Metazoa - 0; Fungi - 51; Plants - 174; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G20250.2p  transcript_id AT5G20250.2  protein_id AT5G20250.2p  transcript_id AT5G20250.2  
At5g20250	chr5:006834207	0.0	W/6834207-6835720,6835818-6835952,6836035-6836635	AT5G20250.3  CDS  gene_syn DARK INDUCIBLE 10, DIN10, F5O24.140, F5O24_140  gene DIN10  function encodes a member of glycosyl hydrolase family 36. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene s expression pattern is responding to the level of sugar in the cell.  go_component chloroplast|GO:0009507|18431481|IDA  go_process aging|GO:0007568|11240919|IEP  go_process response to light stimulus|GO:0009416|11240919|IEP  go_process response to sucrose stimulus|GO:0009744|11240919|IEP  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product DIN10 (DARK INDUCIBLE 10); hydrolase, hydrolyzing O-glycosyl compounds  note DARK INDUCIBLE 10 (DIN10); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to light stimulus, aging, response to sucrose stimulus; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Raffinose synthase (InterPro:IPR008811); BEST Arabidopsis thaliana protein match is: AtSIP2 (Arabidopsis thaliana seed imbibition 2); hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT3G57520.1); Has 285 Blast hits to 268 proteins in 85 species: Archae - 7; Bacteria - 47; Metazoa - 0; Fungi - 51; Plants - 174; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G20250.3p  transcript_id AT5G20250.3  protein_id AT5G20250.3p  transcript_id AT5G20250.3  
At5g20260	chr5:006839326	0.0	C/6839326-6839382,6839087-6839238,6837546-6837900,6836806-6837468	AT5G20260.1  CDS  gene_syn F5O24.150, F5O24_150  go_component chloroplast|GO:0009507||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product catalytic  note catalytic; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: catalytic/ transferase, transferring glycosyl groups (TAIR:AT3G42180.1); Has 923 Blast hits to 921 proteins in 89 species: Archae - 0; Bacteria - 10; Metazoa - 334; Fungi - 4; Plants - 484; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).  protein_id AT5G20260.1p  transcript_id AT5G20260.1  protein_id AT5G20260.1p  transcript_id AT5G20260.1  
At5g20270	chr5:006842355	0.0	C/6842355-6842656,6842198-6842273,6841025-6841645	AT5G20270.1  CDS  gene_syn F5O24.160, F5O24_160, HEPTAHELICAL TRANSMEMBRANE PROTEIN1, HHP1  gene HHP1  function heptahelical transmembrane protein homologous to human adiponectin receptors and progestin receptors  go_component integral to membrane|GO:0016021||IEA  go_process response to salt stress|GO:0009651|16263907|IEP  go_process response to hormone stimulus|GO:0009725|16263907|IEP  go_process response to sucrose stimulus|GO:0009744|16263907|IEP  go_function receptor activity|GO:0004872|16263907|ISS  product HHP1 (HEPTAHELICAL TRANSMEMBRANE PROTEIN1); receptor  note HEPTAHELICAL TRANSMEMBRANE PROTEIN1 (HHP1); FUNCTIONS IN: receptor activity; INVOLVED IN: response to salt stress, response to hormone stimulus, response to sucrose stimulus; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hly-III related (InterPro:IPR004254); BEST Arabidopsis thaliana protein match is: HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2); receptor (TAIR:AT4G30850.2); Has 1902 Blast hits to 1855 proteins in 474 species: Archae - 0; Bacteria - 649; Metazoa - 743; Fungi - 226; Plants - 140; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).  protein_id AT5G20270.1p  transcript_id AT5G20270.1  protein_id AT5G20270.1p  transcript_id AT5G20270.1  
At5g20280	chr5:006849809	0.0	C/6849809-6849997,6849634-6849723,6848940-6849181,6848634-6848697,6847840-6848538,6847407-6847520,6847153-6847284,6846856-6847032,6846708-6846761,6846559-6846621,6845552-6846466,6845331-6845458,6844994-6845258	AT5G20280.1  CDS  gene_syn ATSPS1F, F5O24.170, F5O24_170, sucrose phosphate synthase 1F  gene ATSPS1F  function Encodes a protein with putative sucrose-phosphate synthase activity. When the gene was expressed in transgenic tobacco plants, a clear trend for increased SPS activity was noted.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process sucrose metabolic process|GO:0005985||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function sucrose-phosphate synthase activity|GO:0046524|16876912|RCA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function sucrose-phosphate synthase activity|GO:0046524|16876912|IDA  product ATSPS1F (sucrose phosphate synthase 1F); sucrose-phosphate synthase/ transferase, transferring glycosyl groups  note sucrose phosphate synthase 1F (ATSPS1F); FUNCTIONS IN: sucrose-phosphate synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process, sucrose metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sucrose-6F-phosphate phosphohydrolase, plant and cyanobacteria (InterPro:IPR006380), Sucrose phosphate synthase, plant (InterPro:IPR012819), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F); sucrose-phosphate synthase (TAIR:AT5G11110.1); Has 6278 Blast hits to 6194 proteins in 925 species: Archae - 246; Bacteria - 3459; Metazoa - 8; Fungi - 59; Plants - 474; Viruses - 0; Other Eukaryotes - 2032 (source: NCBI BLink).  protein_id AT5G20280.1p  transcript_id AT5G20280.1  protein_id AT5G20280.1p  transcript_id AT5G20280.1  
At5g20290	chr5:006853009	0.0	C/6853009-6853012,6852824-6852896,6852149-6852482,6851856-6852037,6851695-6851770	AT5G20290.1  CDS  gene_syn F5O24.180, F5O24_180  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S8 (RPS8A)  note 40S ribosomal protein S8 (RPS8A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8e (InterPro:IPR001047), Ribosomal protein S8e, conserved site (InterPro:IPR018283); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S8 (RPS8B) (TAIR:AT5G59240.1); Has 801 Blast hits to 797 proteins in 322 species: Archae - 165; Bacteria - 0; Metazoa - 295; Fungi - 110; Plants - 75; Viruses - 0; Other Eukaryotes - 156 (source: NCBI BLink).  protein_id AT5G20290.1p  transcript_id AT5G20290.1  protein_id AT5G20290.1p  transcript_id AT5G20290.1  
At5g20300	chr5:006853544	0.0	C/6853544-6855541	AT5G20300.3  CDS  gene_syn F5O24.190, F5O24_190  go_component intracellular|GO:0005622||IEA  go_function GTP binding|GO:0005525||IEA  go_component chloroplast outer membrane|GO:0009707||ISS  product chloroplast outer membrane protein, putative  note chloroplast outer membrane protein, putative; FUNCTIONS IN: GTP binding; LOCATED IN: chloroplast outer membrane, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: ATTOC120; GTP binding (TAIR:AT3G16620.1); Has 715 Blast hits to 696 proteins in 114 species: Archae - 0; Bacteria - 130; Metazoa - 329; Fungi - 23; Plants - 164; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT5G20300.3p  transcript_id AT5G20300.3  protein_id AT5G20300.3p  transcript_id AT5G20300.3  
At5g20300	chr5:006856218	0.0	C/6856218-6856332,6853544-6855810	AT5G20300.1  CDS  gene_syn F5O24.190, F5O24_190  go_component intracellular|GO:0005622||IEA  go_function GTP binding|GO:0005525||IEA  go_component chloroplast outer membrane|GO:0009707||ISS  product chloroplast outer membrane protein, putative  note chloroplast outer membrane protein, putative; FUNCTIONS IN: GTP binding; LOCATED IN: chloroplast outer membrane, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: ATTOC120; GTP binding (TAIR:AT3G16620.1); Has 726 Blast hits to 707 proteins in 117 species: Archae - 0; Bacteria - 133; Metazoa - 332; Fungi - 23; Plants - 164; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT5G20300.1p  transcript_id AT5G20300.1  protein_id AT5G20300.1p  transcript_id AT5G20300.1  
At5g20300	chr5:006856218	0.0	C/6856218-6856332,6853544-6855810	AT5G20300.2  CDS  gene_syn F5O24.190, F5O24_190  go_component intracellular|GO:0005622||IEA  go_function GTP binding|GO:0005525||IEA  go_component chloroplast outer membrane|GO:0009707||ISS  product chloroplast outer membrane protein, putative  note chloroplast outer membrane protein, putative; FUNCTIONS IN: GTP binding; LOCATED IN: chloroplast outer membrane, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: ATTOC120; GTP binding (TAIR:AT3G16620.1); Has 726 Blast hits to 707 proteins in 117 species: Archae - 0; Bacteria - 133; Metazoa - 332; Fungi - 23; Plants - 164; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT5G20300.2p  transcript_id AT5G20300.2  protein_id AT5G20300.2p  transcript_id AT5G20300.2  
At5g20310	chr5:006857553	0.0	W/6857553-6857816,6857906-6858027,6858126-6858323,6858401-6859001	AT5G20310.1  CDS  gene_syn F5O24.200, F5O24_200  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sepal, flower, pollen tube; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT2G24370.1); Has 154 Blast hits to 153 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 152; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G20310.1p  transcript_id AT5G20310.1  protein_id AT5G20310.1p  transcript_id AT5G20310.1  
At5g20320	chr5:006868692	0.0	C/6868692-6869068,6868287-6868464,6868090-6868200,6867795-6867935,6867632-6867704,6867362-6867426,6866857-6867000,6866642-6866776,6866027-6866156,6865698-6865794,6864925-6865117,6864596-6864756,6864311-6864517,6863924-6864195,6863561-6863838,6863055-6863491,6862759-6862859,6862403-6862608,6862101-6862310,6861391-6861855,6861032-6861304,6860434-6860760,6860036-6860297,6859838-6859952,6859571-6859721	AT5G20320.1  CDS  gene_syn ATDCL4, DCL4, DICER-LIKE 4, F5O24.210, F5O24_210  gene DCL4  function Encodes an RNase III-like enzyme that catalyzes processing of trans-acting small interfering RNA precursors in a distinct small RNA biogenesis pathway. The protein is also involved in the production of 21-nt primary siRNAs from both inverted-repeat constructs and endogenous sequences, as well as the RDR6-dependent 21-nt secondary siRNAs involved in long-range cell-to-cell signaling. It binds DRB4, a ds-RNA binding protein.  go_component nucleus|GO:0005634|15821876|IDA  go_process RNA processing|GO:0006396||ISS  go_process virus induced gene silencing|GO:0009616|17090584|IGI  go_process vegetative phase change|GO:0010050|16129836|IMP  go_process maintenance of DNA methylation|GO:0010216|16699516|IMP  go_process RNA interference, production of ta-siRNAs|GO:0010267|16129836|IMP  go_process RNA interference, production of ta-siRNAs|GO:0010267|16699516|IMP  go_process RNA interference, production of lsiRNA|GO:0010599|18003861|IMP  go_process RNA interference, production of siRNA|GO:0030422|16741077|IMP  go_process gene silencing by miRNA, production of miRNAs|GO:0035196|16810317|IGI  go_process defense response to virus|GO:0051607|16741077|IMP  go_function RNA binding|GO:0003723||ISS  go_function ribonuclease III activity|GO:0004525||ISS  go_function protein binding|GO:0005515|15821876|IPI  product DCL4 (DICER-LIKE 4); RNA binding / protein binding / ribonuclease III  note DICER-LIKE 4 (DCL4); FUNCTIONS IN: protein binding, RNA binding, ribonuclease III activity; INVOLVED IN: in 9 processes; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Double-stranded RNA binding (InterPro:IPR001159), Argonaute and Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Dicer double-stranded RNA-binding fold (InterPro:IPR005034), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DCL2 (DICER-LIKE 2); ATP binding / ATP-dependent helicase/ RNA binding / double-stranded RNA binding / helicase/ nucleic acid binding / ribonuclease III (TAIR:AT3G03300.1); Has 13162 Blast hits to 10149 proteins in 1687 species: Archae - 207; Bacteria - 5831; Metazoa - 2252; Fungi - 1091; Plants - 535; Viruses - 29; Other Eukaryotes - 3217 (source: NCBI BLink).  protein_id AT5G20320.1p  transcript_id AT5G20320.1  protein_id AT5G20320.1p  transcript_id AT5G20320.1  
At5g20330	chr5:006871620	0.0	W/6871620-6872657	AT5G20330.1  CDS  gene_syn BETAG4, F5O24.220, F5O24_220  gene BETAG4  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BETAG4; catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETAG4; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BG5 (beta-1,3-glucanase 5); glucan 1,3-beta-glucosidase/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT5G20340.1); Has 1366 Blast hits to 1357 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1363; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G20330.1p  transcript_id AT5G20330.1  protein_id AT5G20330.1p  transcript_id AT5G20330.1  
At5g20340	chr5:006874787	0.0	W/6874787-6875851	AT5G20340.1  CDS  gene_syn BG5, F5O24.230, F5O24_230, beta-1,3-glucanase 5  gene BG5  function Encodes a putative beta 1,3-glucanase.  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function glucan 1,3-beta-glucosidase activity|GO:0004338|10092183|TAS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BG5 (beta-1,3-glucanase 5); glucan 1,3-beta-glucosidase/ hydrolase, hydrolyzing O-glycosyl compounds  note beta-1,3-glucanase 5 (BG5); FUNCTIONS IN: glucan 1,3-beta-glucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BETAG4; catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT5G20330.1); Has 1367 Blast hits to 1358 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1364; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G20340.1p  transcript_id AT5G20340.1  protein_id AT5G20340.1p  transcript_id AT5G20340.1  
At5g20350	chr5:006876772	0.0	W/6876772-6877029,6877134-6877274,6877396-6877508,6878004-6878083,6878185-6878348,6878653-6878791,6878890-6878989,6879355-6879412,6879536-6879613,6879722-6879820,6880173-6880251,6880347-6880495,6880698-6881102	AT5G20350.1  CDS  gene_syn F5O24.240, F5O24_240, TIP GROWTH DEFECTIVE 1, TIP1  gene TIP1  function Encodes a protein containing ankyrin and DHHC-CRD domain. Acts to restrict the size of the swelling that forms at the beginning of root hair cell growth, possibly by a mechanism that requires RHD1. Mutant displays defects in both root hair and pollen tube growth.  go_process response to salt stress|GO:0009651|16183846|IEP  go_process cell tip growth|GO:0009932|8022944|IMP  go_function acyl binding|GO:0000035|16100337|IDA  go_function S-acyltransferase activity|GO:0016417|16100337|IGI  product TIP1 (TIP GROWTH DEFECTIVE 1); S-acyltransferase/ acyl binding  note TIP GROWTH DEFECTIVE 1 (TIP1); FUNCTIONS IN: acyl binding, S-acyltransferase activity; INVOLVED IN: response to salt stress, cell tip growth; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT2G14255.1); Has 61010 Blast hits to 26007 proteins in 871 species: Archae - 64; Bacteria - 4067; Metazoa - 31082; Fungi - 4652; Plants - 2378; Viruses - 777; Other Eukaryotes - 17990 (source: NCBI BLink).  protein_id AT5G20350.1p  transcript_id AT5G20350.1  protein_id AT5G20350.1p  transcript_id AT5G20350.1  
At5g20360	chr5:006882362	0.0	C/6882362-6884630,6882121-6882281	AT5G20360.1  CDS  gene_syn F5O24.250, F5O24_250  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein  note octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT2G25290.2); Has 4210 Blast hits to 3464 proteins in 255 species: Archae - 13; Bacteria - 127; Metazoa - 2399; Fungi - 517; Plants - 482; Viruses - 2; Other Eukaryotes - 670 (source: NCBI BLink).  protein_id AT5G20360.1p  transcript_id AT5G20360.1  protein_id AT5G20360.1p  transcript_id AT5G20360.1  
At5g20370	chr5:006886931	0.0	C/6886931-6887458	AT5G20370.1  CDS  gene_syn F5O24.260, F5O24_260  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product serine-rich protein-related  note serine-rich protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, flower, pollen tube; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: serine-rich protein-related (TAIR:AT5G11090.1); Has 92 Blast hits to 92 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G20370.1p  transcript_id AT5G20370.1  protein_id AT5G20370.1p  transcript_id AT5G20370.1  
At5g20380	chr5:006892011	0.0	C/6892011-6892358,6891642-6891787,6891468-6891567,6891209-6891261,6890800-6890874,6890571-6890651,6890356-6890402,6889878-6889945,6889426-6889541,6889056-6889092,6888844-6888939,6888489-6888630,6888314-6888366,6888119-6888205,6887936-6888040	AT5G20380.1  CDS  gene_syn F5O24.270, F5O24_270, PHT4;5  gene PHT4;5  function Encodes an inorganic phosphate transporter (PHT4;5).  go_component plastid|GO:0009536|18086223|IDA  go_component membrane|GO:0016020|11152613|ISS  go_function inorganic phosphate transmembrane transporter activity|GO:0005315|18086223|IDA  product PHT4;5; inorganic phosphate transmembrane transporter  note PHT4;5; FUNCTIONS IN: inorganic phosphate transmembrane transporter activity; LOCATED IN: plastid, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ANTR2; inorganic phosphate transmembrane transporter/ organic anion transmembrane transporter (TAIR:AT4G00370.1); Has 25487 Blast hits to 25407 proteins in 1436 species: Archae - 371; Bacteria - 19246; Metazoa - 2199; Fungi - 921; Plants - 259; Viruses - 0; Other Eukaryotes - 2491 (source: NCBI BLink).  protein_id AT5G20380.1p  transcript_id AT5G20380.1  protein_id AT5G20380.1p  transcript_id AT5G20380.1  
At5g20390	chr5:006892982	0.0	C/6892982-6894016	AT5G20390.1  CDS  gene_syn F5O24.280, F5O24_280  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product beta-1,3-glucanase, putative  note beta-1,3-glucanase, putative; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BG5 (beta-1,3-glucanase 5); glucan 1,3-beta-glucosidase/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT5G20340.1); Has 1370 Blast hits to 1360 proteins in 109 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 1366; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G20390.1p  transcript_id AT5G20390.1  protein_id AT5G20390.1p  transcript_id AT5G20390.1  
At5g20400	chr5:006894871	0.0	W/6894871-6895104,6895200-6895447,6895528-6895855,6895949-6896185	AT5G20400.1  CDS  gene_syn F5O24.290, F5O24_290  function encodes a protein whose sequence is similar to flavanone 3 hydroxylase from Malus.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706|8208851|ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT1G49390.1); Has 5851 Blast hits to 5828 proteins in 671 species: Archae - 0; Bacteria - 676; Metazoa - 127; Fungi - 642; Plants - 3063; Viruses - 0; Other Eukaryotes - 1343 (source: NCBI BLink).  protein_id AT5G20400.1p  transcript_id AT5G20400.1  protein_id AT5G20400.1p  transcript_id AT5G20400.1  
At5g20410	chr5:006896765	0.0	W/6896765-6897070,6897156-6897490,6897572-6897938,6898017-6898079,6898158-6898232,6898321-6898581	AT5G20410.1  CDS  gene_syn ATMGD2, F5O24.300, F5O24_300, MGD2  gene MGD2  function Encodes a type B monogalactosyldiacylglycerol (MGDG) synthase. Strongly induced by phosphate deprivation, and in non-photosynthetic tissues. Does not contribute to galactolipid synthesis under Pi-sufficient conditions but does under Pi starvation.  go_component chloroplast outer membrane|GO:0009707|11553816|IDA  go_component chloroplast outer membrane|GO:0009707|15590685|TAS  go_process fatty acid metabolic process|GO:0006631|18808455|IGI  go_process cellular response to phosphate starvation|GO:0016036|11553816|IEP  go_process cellular response to phosphate starvation|GO:0016036|18808455|IGI  go_process galactolipid metabolic process|GO:0019374|18808455|IGI  go_process galactolipid biosynthetic process|GO:0019375|11553816|TAS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function UDP-galactosyltransferase activity|GO:0035250|15590685|TAS  go_function 1,2-diacylglycerol 3-beta-galactosyltransferase activity|GO:0046509|11553816|IDA  product MGD2; 1,2-diacylglycerol 3-beta-galactosyltransferase/ UDP-galactosyltransferase/ transferase, transferring glycosyl groups  note MGD2; FUNCTIONS IN: 1,2-diacylglycerol 3-beta-galactosyltransferase activity, transferase activity, transferring glycosyl groups, UDP-galactosyltransferase activity; INVOLVED IN: cellular response to phosphate starvation, fatty acid metabolic process, galactolipid biosynthetic process, galactolipid metabolic process; LOCATED IN: chloroplast outer membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Monogalactosyldiacylglycerol synthase (InterPro:IPR009695); BEST Arabidopsis thaliana protein match is: MGDC; 1,2-diacylglycerol 3-beta-galactosyltransferase (TAIR:AT2G11810.1); Has 741 Blast hits to 741 proteins in 245 species: Archae - 0; Bacteria - 605; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT5G20410.1p  transcript_id AT5G20410.1  protein_id AT5G20410.1p  transcript_id AT5G20410.1  
At5g20420	chr5:006903218	0.0	C/6903218-6903266,6902796-6903028,6901271-6902704,6901036-6901173,6899015-6900946	AT5G20420.1  CDS  gene_syn CHR42, F7C8.10, F7C8_10, chromatin remodeling 42  gene CHR42  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function DNA binding|GO:0003677||ISS  go_function helicase activity|GO:0004386||ISS  go_function ATP binding|GO:0005524||ISS  product CHR42 (chromatin remodeling 42); ATP binding / DNA binding / helicase/ nucleic acid binding  note chromatin remodeling 42 (CHR42); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; EXPRESSED IN: shoot apex, embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: CHR38 (CHROMATIN REMODELING 38); ATP binding / DNA binding / helicase/ nucleic acid binding (TAIR:AT3G42670.1); Has 9132 Blast hits to 8120 proteins in 877 species: Archae - 52; Bacteria - 2063; Metazoa - 2723; Fungi - 2069; Plants - 638; Viruses - 49; Other Eukaryotes - 1538 (source: NCBI BLink).  protein_id AT5G20420.1p  transcript_id AT5G20420.1  protein_id AT5G20420.1p  transcript_id AT5G20420.1  
At5g20430	chr5:006904705	0.0	W/6904705-6904718,6904837-6904955,6905043-6905206,6905320-6905391	AT5G20430.1  CDS  gene_syn F7C8.20, F7C8_20  go_function protein binding|GO:0005515||IEA  go_component nucleus|GO:0005634|15469496|IDA  go_component phragmoplast|GO:0009524|15469496|IDA  go_process biological_process|GO:0008150||ND  product mob1/phocein family protein  note mob1/phocein family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, phragmoplast; CONTAINS InterPro DOMAIN/s: Mob1/phocein (InterPro:IPR005301); BEST Arabidopsis thaliana protein match is: protein binding (TAIR:AT5G20440.1); Has 800 Blast hits to 800 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 459; Fungi - 176; Plants - 65; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).  protein_id AT5G20430.1p  transcript_id AT5G20430.1  protein_id AT5G20430.1p  transcript_id AT5G20430.1  
At5g20440	chr5:006908646	0.0	W/6908646-6908674,6908897-6908957,6909045-6909141,6909228-6909318,6909434-6909567,6909651-6909814,6909922-6909996	AT5G20440.1  CDS  gene_syn F7C8.30, F7C8_30  go_function protein binding|GO:0005515||IEA  go_component nucleus|GO:0005634|15469496|IDA  go_process biological_process|GO:0008150||ND  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Mob1/phocein (InterPro:IPR005301); BEST Arabidopsis thaliana protein match is: mob1/phocein family protein (TAIR:AT5G45550.1); Has 952 Blast hits to 952 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 574; Fungi - 204; Plants - 65; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).  protein_id AT5G20440.1p  transcript_id AT5G20440.1  protein_id AT5G20440.1p  transcript_id AT5G20440.1  
At5g20447	chr5:006910417	0.0	W/6910417-6910515	AT5G20447.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G20447.1p  transcript_id AT5G20447.1  protein_id AT5G20447.1p  transcript_id AT5G20447.1  
At5g20450	chr5:006912487	0.0	C/6912487-6912639,6912228-6912359,6912004-6912135,6911726-6911896,6911478-6911600,6911202-6911375,6910968-6911087	AT5G20450.2  CDS  gene_syn F7C8.40, F7C8_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Dilute (InterPro:IPR002710); BEST Arabidopsis thaliana protein match is: XIK; motor/ protein binding (TAIR:AT5G20490.2); Has 1318 Blast hits to 1067 proteins in 252 species: Archae - 16; Bacteria - 249; Metazoa - 364; Fungi - 78; Plants - 226; Viruses - 1; Other Eukaryotes - 384 (source: NCBI BLink).  protein_id AT5G20450.2p  transcript_id AT5G20450.2  protein_id AT5G20450.2p  transcript_id AT5G20450.2  
At5g20450	chr5:006913127	0.0	C/6913127-6913132,6912487-6912654,6912228-6912359,6912004-6912135,6911726-6911896,6911478-6911600,6911202-6911375,6910968-6911087	AT5G20450.1  CDS  gene_syn F7C8.40, F7C8_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Dilute (InterPro:IPR002710); BEST Arabidopsis thaliana protein match is: XIK; motor/ protein binding (TAIR:AT5G20490.2); Has 1401 Blast hits to 1150 proteins in 266 species: Archae - 18; Bacteria - 259; Metazoa - 406; Fungi - 95; Plants - 225; Viruses - 1; Other Eukaryotes - 397 (source: NCBI BLink).  protein_id AT5G20450.1p  transcript_id AT5G20450.1  protein_id AT5G20450.1p  transcript_id AT5G20450.1  
At5g20460	chr5:006914303	0.0	W/6914303-6914359,6914760-6914855	AT5G20460.1  CDS  gene_syn F7C8.50, F7C8_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, male gametophyte, sepal, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G20460.1p  transcript_id AT5G20460.1  protein_id AT5G20460.1p  transcript_id AT5G20460.1  
At5g20470	chr5:006919827	0.0	C/6919827-6920120,6919631-6919729,6919335-6919556,6919082-6919209,6918839-6918929,6918473-6918637,6918258-6918354,6917560-6917656,6917165-6917231,6917019-6917075,6916872-6916925,6916705-6916785,6916542-6916624,6916324-6916459	AT5G20470.1  CDS  gene_syn F7C8.60, F7C8_60  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function motor activity|GO:0003774||ISS  product myosin, putative  note myosin, putative; FUNCTIONS IN: motor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710); BEST Arabidopsis thaliana protein match is: XIK; motor/ protein binding (TAIR:AT5G20490.2); Has 35273 Blast hits to 18627 proteins in 1386 species: Archae - 420; Bacteria - 3811; Metazoa - 20406; Fungi - 2294; Plants - 1465; Viruses - 141; Other Eukaryotes - 6736 (source: NCBI BLink).  protein_id AT5G20470.1p  transcript_id AT5G20470.1  protein_id AT5G20470.1p  transcript_id AT5G20470.1  
At5g20480	chr5:006922497	0.0	W/6922497-6925197,6925285-6925679	AT5G20480.1  CDS  gene_syn EF-TU RECEPTOR, EFR, F7C8.70, F7C8_70  gene EFR  function Encodes a predicted leucine-rich repeat receptor kinase (LRR-RLK). Functions as the receptor for bacterial PAMP (pathogen associated molecular patterns) EF-Tu.  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_process defense response signaling pathway, resistance gene-independent|GO:0010204|16713565|IMP  go_process detection of bacterium|GO:0016045|16713565|IDA  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product EFR (EF-TU RECEPTOR); ATP binding / kinase/ protein serine/threonine kinase  note EF-TU RECEPTOR (EFR); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: defense response signaling pathway, resistance gene-independent, transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation, detection of bacterium; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT3G47110.1); Has 145789 Blast hits to 94870 proteins in 3333 species: Archae - 92; Bacteria - 11413; Metazoa - 60068; Fungi - 6614; Plants - 48784; Viruses - 311; Other Eukaryotes - 18507 (source: NCBI BLink).  protein_id AT5G20480.1p  transcript_id AT5G20480.1  protein_id AT5G20480.1p  transcript_id AT5G20480.1  
At5g20490	chr5:006936002	0.0	C/6936002-6936079,6935751-6935896,6935492-6935648,6935267-6935325,6934751-6934910,6934496-6934645,6934274-6934410,6934043-6934189,6933749-6933850,6933610-6933667,6933421-6933522,6933292-6933329,6933008-6933134,6932762-6932932,6932311-6932442,6932077-6932186,6931866-6931926,6931601-6931778,6931169-6931374,6930924-6931043,6930741-6930839,6930445-6930666,6930184-6930323,6929864-6929981,6929716-6929766,6929546-6929617,6929265-6929435,6928991-6929146,6928685-6928891,6928271-6928408,6928110-6928180,6927916-6928015,6927768-6927824,6927618-6927674,6927443-6927523,6927281-6927363,6927064-6927199	AT5G20490.2  CDS  gene_syn ATXIK, F7C8.80, F7C8_80, MYOSIN XI K, MYOSIN XI-17, XI-17, XIK  gene XIK  function Encodes a member of the type XI myosin protein family involved in root hair growth, trichome development, and organelle trafficking. This gene appears to be expressed at low levels throughout the plant.  go_component myosin complex|GO:0016459||IEA  go_component myosin complex|GO:0016459||ISS  go_process post-embryonic development|GO:0009791|19060218|IGI  go_process trichome morphogenesis|GO:0010090|17458634|IMP  go_process trichome branching|GO:0010091|17458634|IMP  go_process fruit development|GO:0010154|19060218|IGI  go_process cell growth|GO:0016049|19060218|IGI  go_process actin filament-based movement|GO:0030048|11516337|TAS  go_process root hair cell tip growth|GO:0048768|17458634|IMP  go_process cell division|GO:0051301|19060218|IGI  go_process Golgi localization|GO:0051645|18178669|IMP  go_process mitochondrion localization|GO:0051646|18178669|IMP  go_process peroxisome localization|GO:0060151|18178669|IMP  go_function motor activity|GO:0003774|11516337|ISS  go_function motor activity|GO:0003774||ISS  go_function protein binding|GO:0005515||ISS  product XIK; motor/ protein binding  note XIK; FUNCTIONS IN: protein binding, motor activity; INVOLVED IN: in 11 processes; LOCATED IN: myosin complex; EXPRESSED IN: stem, fruit, root, flower, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin head, motor region (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: XIC; motor/ protein binding (TAIR:AT1G08730.1).  protein_id AT5G20490.2p  transcript_id AT5G20490.2  protein_id AT5G20490.2p  transcript_id AT5G20490.2  
At5g20490	chr5:006936771	0.0	C/6936771-6936825,6936415-6936533,6936002-6936145,6935751-6935896,6935492-6935648,6935267-6935325,6934751-6934910,6934496-6934645,6934274-6934410,6934043-6934189,6933749-6933850,6933610-6933667,6933421-6933522,6933292-6933329,6933008-6933134,6932762-6932932,6932311-6932442,6932077-6932186,6931866-6931926,6931601-6931778,6931169-6931374,6930924-6931043,6930741-6930839,6930445-6930666,6930184-6930323,6929864-6929981,6929716-6929766,6929546-6929617,6929265-6929435,6928991-6929146,6928685-6928891,6928271-6928408,6928110-6928180,6927916-6928015,6927768-6927824,6927618-6927674,6927443-6927523,6927281-6927363,6927064-6927199	AT5G20490.1  CDS  gene_syn ATXIK, F7C8.80, F7C8_80, MYOSIN XI K, MYOSIN XI-17, XI-17, XIK  gene XIK  function Encodes a member of the type XI myosin protein family involved in root hair growth, trichome development, and organelle trafficking. This gene appears to be expressed at low levels throughout the plant.  go_component endomembrane system|GO:0012505||IEA  go_component myosin complex|GO:0016459||IEA  go_component myosin complex|GO:0016459||ISS  go_process post-embryonic development|GO:0009791|19060218|IGI  go_process trichome morphogenesis|GO:0010090|17458634|IMP  go_process trichome branching|GO:0010091|17458634|IMP  go_process fruit development|GO:0010154|19060218|IGI  go_process cell growth|GO:0016049|19060218|IGI  go_process actin filament-based movement|GO:0030048|11516337|TAS  go_process root hair cell tip growth|GO:0048768|17458634|IMP  go_process cell division|GO:0051301|19060218|IGI  go_process Golgi localization|GO:0051645|18178669|IMP  go_process mitochondrion localization|GO:0051646|18178669|IMP  go_process peroxisome localization|GO:0060151|18178669|IMP  go_function motor activity|GO:0003774|11516337|ISS  go_function motor activity|GO:0003774||ISS  go_function protein binding|GO:0005515||ISS  product XIK; motor/ protein binding  note XIK; FUNCTIONS IN: protein binding, motor activity; INVOLVED IN: in 11 processes; LOCATED IN: endomembrane system, myosin complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor region (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: XIC; motor/ protein binding (TAIR:AT1G08730.1); Has 33111 Blast hits to 21034 proteins in 1529 species: Archae - 328; Bacteria - 3501; Metazoa - 19056; Fungi - 2297; Plants - 1195; Viruses - 136; Other Eukaryotes - 6598 (source: NCBI BLink).  protein_id AT5G20490.1p  transcript_id AT5G20490.1  protein_id AT5G20490.1p  transcript_id AT5G20490.1  
At5g20500	chr5:006938652	0.0	W/6938652-6938809,6939178-6939251,6939399-6939497,6939589-6939665	AT5G20500.1  CDS  gene_syn F7C8.90, F7C8_90  go_component endomembrane system|GO:0012505||IEA  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  go_function arsenate reductase (glutaredoxin) activity|GO:0008794||ISS  product glutaredoxin, putative  note glutaredoxin, putative; FUNCTIONS IN: electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin (InterPro:IPR002109), Glutaredoxin active site (InterPro:IPR011767), Glutaredoxin, eukaryotic and viruses (InterPro:IPR011899), Glutaredoxin subgroup (InterPro:IPR014025), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin, putative (TAIR:AT1G77370.1); Has 4164 Blast hits to 4161 proteins in 811 species: Archae - 10; Bacteria - 1751; Metazoa - 378; Fungi - 232; Plants - 403; Viruses - 108; Other Eukaryotes - 1282 (source: NCBI BLink).  protein_id AT5G20500.1p  transcript_id AT5G20500.1  protein_id AT5G20500.1p  transcript_id AT5G20500.1  
At5g20510	chr5:006942747	0.0	C/6942747-6942846,6942514-6942546,6941717-6941945,6941437-6941572,6939991-6940275	AT5G20510.1  CDS  gene_syn AL5, ALFIN-LIKE 5, F7C8.100, F7C8_100  gene AL5  function AL5 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.  go_component nucleus|GO:0005634|19154204|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function methylated histone residue binding|GO:0035064|19154204|ISS  product AL5 (ALFIN-LIKE 5); DNA binding / methylated histone residue binding  note ALFIN-LIKE 5 (AL5); FUNCTIONS IN: methylated histone residue binding, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: AL3 (ALFIN-LIKE 3); DNA binding / methylated histone residue binding (TAIR:AT3G42790.1); Has 1253 Blast hits to 1215 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 639; Fungi - 213; Plants - 322; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT5G20510.1p  transcript_id AT5G20510.1  protein_id AT5G20510.1p  transcript_id AT5G20510.1  
At5g20520	chr5:006946078	0.0	C/6946078-6946315,6945753-6945788,6945544-6945622,6945378-6945432,6945169-6945285,6944307-6944471,6943657-6943885,6943536-6943543	AT5G20520.1  CDS  gene_syn F7C8.110, F7C8_110, WAV2, WAVY GROWTH 2  gene WAV2  function Encodes a Bem46-like protein. WAV2 negatively regulates root bending when roots alter their growth direction. It s not involved in sensing environmental stimuli (e.g. gravity, light, water, touch).  go_component nucleus|GO:0005634|15659627|IDA  go_component cytoplasm|GO:0005737|15659627|IDA  go_component vacuole|GO:0005773|15659627|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component plasma membrane|GO:0005886|15659627|IDA  go_component organelle inner membrane|GO:0019866|15659627|IDA  go_component apoplast|GO:0048046|15659627|IDA  go_process response to water|GO:0009415|12447533|IMP  go_process phototropism|GO:0009638|15659627|IMP  go_process positive gravitropism|GO:0009958|15659627|IMP  go_process root development|GO:0048364|15659627|IMP  product WAV2 (WAVY GROWTH 2)  note WAVY GROWTH 2 (WAV2); INVOLVED IN: phototropism, response to water, positive gravitropism, root development; LOCATED IN: in 7 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13610.1); Has 3329 Blast hits to 3329 proteins in 617 species: Archae - 14; Bacteria - 1039; Metazoa - 553; Fungi - 178; Plants - 171; Viruses - 6; Other Eukaryotes - 1368 (source: NCBI BLink).  protein_id AT5G20520.1p  transcript_id AT5G20520.1  protein_id AT5G20520.1p  transcript_id AT5G20520.1  
At5g20540	chr5:006947943	0.0	W/6947943-6948041,6948133-6948572,6950971-6951106,6951185-6951585,6951682-6951760	AT5G20540.1  CDS  gene_syn ATBRXL4, BREVIS RADIX-LIKE 4, BRX-LIKE4, F7C8.130, F7C8_130  gene ATBRXL4  function Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ATBRXL4 (BREVIS RADIX-LIKE 4)  note BREVIS RADIX-LIKE 4 (ATBRXL4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591); BEST Arabidopsis thaliana protein match is: ATBRXL2 (TAIR:AT3G14000.2); Has 431 Blast hits to 242 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 429; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G20540.1p  transcript_id AT5G20540.1  protein_id AT5G20540.1p  transcript_id AT5G20540.1  
At5g20550	chr5:006953623	0.0	C/6953623-6953856,6953287-6953534,6952887-6953217,6952569-6952805	AT5G20550.1  CDS  gene_syn F7C8.140, F7C8_140  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process flavonoid biosynthetic process|GO:0009813||ISS  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT5G20400.1); Has 5648 Blast hits to 5622 proteins in 665 species: Archae - 0; Bacteria - 663; Metazoa - 122; Fungi - 587; Plants - 3059; Viruses - 0; Other Eukaryotes - 1217 (source: NCBI BLink).  protein_id AT5G20550.1p  transcript_id AT5G20550.1  protein_id AT5G20550.1p  transcript_id AT5G20550.1  
At5g20560	chr5:006955368	0.0	W/6955368-6956381	AT5G20560.1  CDS  gene_syn F7C8.150, F7C8_150  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product beta-1,3-glucanase, putative  note beta-1,3-glucanase, putative; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BETAG4; catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT5G20330.1); Has 1367 Blast hits to 1357 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 1362; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G20560.1p  transcript_id AT5G20560.1  protein_id AT5G20560.1p  transcript_id AT5G20560.1  
At5g20570	chr5:006958032	0.0	C/6958032-6958221,6957908-6957958,6957754-6957813,6957024-6957095,6956905-6956942	AT5G20570.3  CDS  gene_syn ATRBX1, F7C8.160, F7C8_160, HRT1, RBX1, REGULATOR OF CULLINS-1, RING-BOX 1, ROC1  gene RBX1  function Encodes a ring-box 1 like protein and component of the SCF ubiquitinization complex mediating auxin responses. Forms a E3 ubiquitin ligase complex with CUL3A and At1g21780.1 a BTB domain protein.  go_component SCF ubiquitin ligase complex|GO:0019005|12215511|IPI  go_component Cul3-RING ubiquitin ligase complex|GO:0031463|15772280|IPI  go_process response to auxin stimulus|GO:0009733|12215511|IMP  go_process protein ubiquitination|GO:0016567|12215511|TAS  go_function protein binding|GO:0005515|15659098|IPI  go_function protein binding|GO:0005515|16844902|IPI  product RBX1 (RING-BOX 1); protein binding  note RING-BOX 1 (RBX1); FUNCTIONS IN: protein binding; INVOLVED IN: response to auxin stimulus, protein ubiquitination; LOCATED IN: SCF ubiquitin ligase complex, Cul3-RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: ring-box protein Roc1/Rbx1/Hrt1, putative (TAIR:AT3G42830.1).  protein_id AT5G20570.3p  transcript_id AT5G20570.3  protein_id AT5G20570.3p  transcript_id AT5G20570.3  
At5g20570	chr5:006958086	0.0	C/6958086-6958221,6957908-6957958,6957754-6957813,6957024-6957095,6956905-6956942	AT5G20570.1  CDS  gene_syn ATRBX1, F7C8.160, F7C8_160, HRT1, RBX1, REGULATOR OF CULLINS-1, RING-BOX 1, ROC1  gene RBX1  function Encodes a ring-box 1 like protein and component of the SCF ubiquitinization complex mediating auxin responses. Forms a E3 ubiquitin ligase complex with CUL3A and At1g21780.1 a BTB domain protein.  go_component SCF ubiquitin ligase complex|GO:0019005|12215511|IPI  go_component Cul3-RING ubiquitin ligase complex|GO:0031463|15772280|IPI  go_process response to auxin stimulus|GO:0009733|12215511|IMP  go_process protein ubiquitination|GO:0016567|12215511|TAS  go_function protein binding|GO:0005515|15659098|IPI  go_function protein binding|GO:0005515|16844902|IPI  product RBX1 (RING-BOX 1); protein binding  note RING-BOX 1 (RBX1); FUNCTIONS IN: protein binding; INVOLVED IN: response to auxin stimulus, protein ubiquitination; LOCATED IN: SCF ubiquitin ligase complex, Cul3-RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: ring-box protein Roc1/Rbx1/Hrt1, putative (TAIR:AT3G42830.1); Has 823 Blast hits to 821 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 428; Fungi - 141; Plants - 82; Viruses - 3; Other Eukaryotes - 169 (source: NCBI BLink).  protein_id AT5G20570.1p  transcript_id AT5G20570.1  protein_id AT5G20570.1p  transcript_id AT5G20570.1  
At5g20570	chr5:006958086	0.0	C/6958086-6958221,6957908-6957958,6957754-6957813,6957269-6957340,6957024-6957095,6956905-6956942	AT5G20570.2  CDS  gene_syn ATRBX1, F7C8.160, F7C8_160, HRT1, RBX1, REGULATOR OF CULLINS-1, RING-BOX 1, ROC1  gene RBX1  function Encodes a ring-box 1 like protein and component of the SCF ubiquitinization complex mediating auxin responses. Forms a E3 ubiquitin ligase complex with CUL3A and At1g21780.1 a BTB domain protein.  go_component SCF ubiquitin ligase complex|GO:0019005|12215511|IPI  go_component Cul3-RING ubiquitin ligase complex|GO:0031463|15772280|IPI  go_process response to auxin stimulus|GO:0009733|12215511|IMP  go_process protein ubiquitination|GO:0016567|12215511|TAS  go_function protein binding|GO:0005515|15659098|IPI  go_function protein binding|GO:0005515|16844902|IPI  product RBX1 (RING-BOX 1); protein binding  note RING-BOX 1 (RBX1); FUNCTIONS IN: protein binding; INVOLVED IN: response to auxin stimulus, protein ubiquitination; LOCATED IN: SCF ubiquitin ligase complex, Cul3-RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: ring-box protein Roc1/Rbx1/Hrt1, putative (TAIR:AT3G42830.1).  protein_id AT5G20570.2p  transcript_id AT5G20570.2  protein_id AT5G20570.2p  transcript_id AT5G20570.2  
At5g20580	chr5:006962534	0.0	C/6962534-6962592,6962215-6962306,6962001-6962105,6961755-6961804,6961565-6961631,6961406-6961478,6960924-6960979,6960212-6960305,6959991-6960075,6959750-6959809,6959537-6959596,6959280-6959372,6959033-6959095,6958790-6958879	AT5G20580.1  CDS  gene_syn F7C8.170, F7C8_170  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G06005.1); Has 124 Blast hits to 124 proteins in 54 species: Archae - 0; Bacteria - 16; Metazoa - 46; Fungi - 23; Plants - 24; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT5G20580.1p  transcript_id AT5G20580.1  protein_id AT5G20580.1p  transcript_id AT5G20580.1  
At5g20580	chr5:006962534	0.0	C/6962534-6962592,6962219-6962306,6962001-6962109,6961755-6961804,6961565-6961631,6961406-6961478,6960924-6960979,6960212-6960305,6959991-6960075,6959750-6959809,6959537-6959596,6959280-6959372,6959033-6959095,6958790-6958879	AT5G20580.2  CDS  gene_syn F7C8.170, F7C8_170  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G06005.1); Has 124 Blast hits to 124 proteins in 54 species: Archae - 0; Bacteria - 16; Metazoa - 46; Fungi - 23; Plants - 24; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT5G20580.2p  transcript_id AT5G20580.2  protein_id AT5G20580.2p  transcript_id AT5G20580.2  
At5g20590	chr5:006963517	0.0	W/6963517-6964103,6964522-6964714,6964963-6965156,6965349-6965507,6965682-6966006	AT5G20590.1  CDS  gene_syn F7C8.180, F7C8_180  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G60790.1); Has 709 Blast hits to 699 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 709; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G20590.1p  transcript_id AT5G20590.1  protein_id AT5G20590.1p  transcript_id AT5G20590.1  
At5g20600	chr5:006966345	0.0	C/6966345-6967943	AT5G20600.1  CDS  gene_syn F7C8.190, F7C8_190  go_component preribosome, small subunit precursor|GO:0030688||IEA  go_process rRNA processing|GO:0006364||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: preribosome, small subunit precursor; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleolar, Nop52 (InterPro:IPR010301); Has 444 Blast hits to 431 proteins in 151 species: Archae - 0; Bacteria - 10; Metazoa - 196; Fungi - 114; Plants - 27; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).  protein_id AT5G20600.1p  transcript_id AT5G20600.1  protein_id AT5G20600.1p  transcript_id AT5G20600.1  
At5g20610	chr5:006969184	0.0	W/6969184-6971594,6971711-6972794	AT5G20610.1  CDS  gene_syn T1M15.10, T1M15_10  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26160.1); Has 810 Blast hits to 639 proteins in 143 species: Archae - 6; Bacteria - 86; Metazoa - 247; Fungi - 61; Plants - 98; Viruses - 5; Other Eukaryotes - 307 (source: NCBI BLink).  protein_id AT5G20610.1p  transcript_id AT5G20610.1  protein_id AT5G20610.1p  transcript_id AT5G20610.1  
At5g20620	chr5:006973315	0.0	C/6973315-6974463	AT5G20620.1  CDS  gene_syn T1M15.20, T1M15_20, UBQ4  gene UBQ4  function encodes a ubiquitin polyprotein.  go_process protein modification process|GO:0006464||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|7713442|TAS  go_process protein ubiquitination during ubiquitin-dependent protein catabolic process|GO:0042787||ISS  go_function protein binding|GO:0005515|8382544|ISS  go_function protein binding|GO:0005515||ISS  product UBQ4; protein binding  note UBQ4; FUNCTIONS IN: protein binding; INVOLVED IN: protein ubiquitination during ubiquitin-dependent protein catabolic process, protein modification process, ubiquitin-dependent protein catabolic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: UBQ10 (POLYUBIQUITIN 10); protein binding (TAIR:AT4G05320.6); Has 25134 Blast hits to 5460 proteins in 614 species: Archae - 0; Bacteria - 43; Metazoa - 12455; Fungi - 2463; Plants - 4288; Viruses - 755; Other Eukaryotes - 5130 (source: NCBI BLink).  protein_id AT5G20620.1p  transcript_id AT5G20620.1  protein_id AT5G20620.1p  transcript_id AT5G20620.1  
At5g20630	chr5:006975315	0.0	C/6975315-6975950	AT5G20630.1  CDS  gene_syn ARABIDOPSIS THALIANA GERMIN 3, ATGER3, GER3, GERMIN 3, GERMIN-LIKE PROTEIN 3, GLP3, GLP3A, GLP3B, T1M15.30, T1M15_30  gene GER3  function Encodes a germin-like protein. Its transcripts are more abundant in RNA from leaves collected in the evening, suggesting some kind of circadian regulation.  go_component cell wall|GO:0005618|15593128|IDA  go_component nucleus|GO:0005634|14617066|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_component extracellular matrix|GO:0031012|10987552|IDA  go_process response to cold|GO:0009409|14617066|IEP  go_process peptidyl-cysteine S-nitrosylation|GO:0018119|18297659|IDA  go_function oxalate oxidase activity|GO:0050162|10987552|IDA  product GER3 (GERMIN 3); oxalate oxidase  note GERMIN 3 (GER3); FUNCTIONS IN: oxalate oxidase activity; INVOLVED IN: response to cold, peptidyl-cysteine S-nitrosylation; LOCATED IN: extracellular matrix, apoplast, cell wall, nucleus, plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: GER1 (GERMIN-LIKE PROTEIN 1); oxalate oxidase (TAIR:AT1G72610.1); Has 857 Blast hits to 856 proteins in 84 species: Archae - 0; Bacteria - 23; Metazoa - 0; Fungi - 18; Plants - 807; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT5G20630.1p  transcript_id AT5G20630.1  protein_id AT5G20630.1p  transcript_id AT5G20630.1  
At5g20635	chr5:006981573	0.0	C/6981573-6981767,6980185-6980237,6980065-6980109,6979920-6979964,6979314-6979731	AT5G20635.1  CDS  go_component chloroplast|GO:0009507||IEA  go_component keratin filament|GO:0045095||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: keratin filament, chloroplast; CONTAINS InterPro DOMAIN/s: Keratin, high sulphur B2 protein (InterPro:IPR002494); Has 5724 Blast hits to 2501 proteins in 208 species: Archae - 6; Bacteria - 25; Metazoa - 4583; Fungi - 39; Plants - 97; Viruses - 40; Other Eukaryotes - 934 (source: NCBI BLink).  protein_id AT5G20635.1p  transcript_id AT5G20635.1  protein_id AT5G20635.1p  transcript_id AT5G20635.1  
At5g20640	chr5:006984379	0.0	W/6984379-6984618,6984709-6984969,6985059-6985205	AT5G20640.1  CDS  gene_syn T1M15.40, T1M15_40  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: leaf whorl, hypocotyl, root, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G05910.1); Has 146 Blast hits to 146 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 146; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G20640.1p  transcript_id AT5G20640.1  protein_id AT5G20640.1p  transcript_id AT5G20640.1  
At5g20650	chr5:006985481	0.0	C/6985481-6985921	AT5G20650.1  CDS  gene_syn COPT5, T1M15.50, T1M15_50  gene COPT5  function encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process copper ion transport|GO:0006825||IEA  go_process copper ion transport|GO:0006825||ISS  go_function copper ion transmembrane transporter activity|GO:0005375||ISS  go_function high affinity copper ion transmembrane transporter activity|GO:0015089|12650623|IGI  product COPT5; copper ion transmembrane transporter/ high affinity copper ion transmembrane transporter  note COPT5; FUNCTIONS IN: high affinity copper ion transmembrane transporter activity, copper ion transmembrane transporter activity; INVOLVED IN: copper ion transport; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ctr copper transporter (InterPro:IPR007274); BEST Arabidopsis thaliana protein match is: copper transporter, putative (TAIR:AT2G26975.1); Has 357 Blast hits to 356 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 192; Fungi - 45; Plants - 78; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT5G20650.1p  transcript_id AT5G20650.1  protein_id AT5G20650.1p  transcript_id AT5G20650.1  
At5g20660	chr5:006986402	0.0	W/6986402-6986734,6986819-6987057,6987156-6987312,6987459-6987536,6987886-6987960,6988046-6988165,6988258-6988422,6988532-6989054,6989200-6989356,6989839-6989948,6990050-6990162,6990285-6990947	AT5G20660.1  CDS  gene_syn T1M15.60, T1M15_60  go_process proteolysis|GO:0006508||IEA  go_function peptidase activity|GO:0008233||IEA  product 24 kDa vacuolar protein, putative  note 24 kDa vacuolar protein, putative; FUNCTIONS IN: peptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M28 (InterPro:IPR007484); BEST Arabidopsis thaliana protein match is: peptidase (TAIR:AT1G67420.1); Has 935 Blast hits to 925 proteins in 208 species: Archae - 6; Bacteria - 236; Metazoa - 415; Fungi - 154; Plants - 39; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT5G20660.1p  transcript_id AT5G20660.1  protein_id AT5G20660.1p  transcript_id AT5G20660.1  
At5g20660	chr5:006989708	0.0	W/6989708-6989727,6989839-6989948,6990050-6990162,6990285-6990947	AT5G20660.2  CDS  gene_syn T1M15.60, T1M15_60  product 24 kDa vacuolar protein, putative  note 24 kDa vacuolar protein, putative; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages.  protein_id AT5G20660.2p  transcript_id AT5G20660.2  protein_id AT5G20660.2p  transcript_id AT5G20660.2  
At5g20670	chr5:006993332	0.0	C/6993332-6993793	AT5G20670.1  CDS  gene_syn T1M15.70, T1M15_70  product unknown protein  note unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1677, plant (InterPro:IPR012876); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72510.2); Has 129 Blast hits to 128 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G20670.1p  transcript_id AT5G20670.1  protein_id AT5G20670.1p  transcript_id AT5G20670.1  
At5g20680	chr5:006998946	0.0	W/6998946-6998998,6999220-6999371,6999682-6999765,6999911-7000252,7000450-7000645,7000768-7001596	AT5G20680.1  CDS  gene_syn T1M15.80, T1M15_80  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64020.1); Has 994 Blast hits to 929 proteins in 72 species: Archae - 0; Bacteria - 4; Metazoa - 65; Fungi - 20; Plants - 706; Viruses - 7; Other Eukaryotes - 192 (source: NCBI BLink).  protein_id AT5G20680.1p  transcript_id AT5G20680.1  protein_id AT5G20680.1p  transcript_id AT5G20680.1  
At5g20680	chr5:006998946	0.0	W/6998946-6998998,6999220-6999371,6999682-6999765,6999911-7000252,7000450-7000645,7000768-7001596	AT5G20680.3  CDS  gene_syn T1M15.80, T1M15_80  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64020.1).  protein_id AT5G20680.3p  transcript_id AT5G20680.3  protein_id AT5G20680.3p  transcript_id AT5G20680.3  
At5g20680	chr5:006999221	0.0	W/6999221-6999371,6999682-6999765,6999911-7000252,7000450-7000645,7000768-7001596	AT5G20680.2  CDS  gene_syn T1M15.80, T1M15_80  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64020.1); Has 986 Blast hits to 928 proteins in 72 species: Archae - 0; Bacteria - 4; Metazoa - 65; Fungi - 20; Plants - 707; Viruses - 7; Other Eukaryotes - 183 (source: NCBI BLink).  protein_id AT5G20680.2p  transcript_id AT5G20680.2  protein_id AT5G20680.2p  transcript_id AT5G20680.2  
At5g20690	chr5:007002453	0.0	W/7002453-7003863,7003983-7004551	AT5G20690.1  CDS  gene_syn T1M15.90, T1M15_90  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product ATP binding / kinase/ protein serine/threonine kinase  note ATP binding / kinase/ protein serine/threonine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT3G42880.1); Has 72960 Blast hits to 46188 proteins in 1983 species: Archae - 48; Bacteria - 4710; Metazoa - 21758; Fungi - 2005; Plants - 37630; Viruses - 135; Other Eukaryotes - 6674 (source: NCBI BLink).  protein_id AT5G20690.1p  transcript_id AT5G20690.1  protein_id AT5G20690.1p  transcript_id AT5G20690.1  
At5g20700	chr5:007006399	0.0	C/7006399-7007003,7006178-7006319	AT5G20700.1  CDS  gene_syn T1M15.100, T1M15_100  go_process biological_process|GO:0008150||ND  product senescence-associated protein-related  note senescence-associated protein-related; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: senescence-associated protein-related (TAIR:AT1G74940.1); Has 265 Blast hits to 265 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 265; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G20700.1p  transcript_id AT5G20700.1  protein_id AT5G20700.1p  transcript_id AT5G20700.1  
At5g20710	chr5:007010536	0.0	W/7010536-7010706,7010786-7011061,7011150-7011242,7011442-7011780,7011863-7011950,7012034-7012152,7012237-7012583,7012677-7012893,7012978-7013205,7013291-7013502,7013604-7013994	AT5G20710.1  CDS  gene_syn BGAL7, T1M15.110, T1M15_110, beta-galactosidase 7  gene BGAL7  go_component beta-galactosidase complex|GO:0009341||IEA  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process lactose catabolic process|GO:0005990||IEA  go_process lactose catabolic process, using glucoside 3-dehydrogenase|GO:0019513||IEA  go_process lactose catabolic process via UDP-galactose|GO:0019515||IEA  go_function beta-galactosidase activity|GO:0004565|15517348|TAS  go_function beta-galactosidase activity|GO:0004565||ISS  product BGAL7 (beta-galactosidase 7); beta-galactosidase  note beta-galactosidase 7 (BGAL7); FUNCTIONS IN: beta-galactosidase activity; INVOLVED IN: lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process; LOCATED IN: endomembrane system, beta-galactosidase complex; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: BGAL15 (beta-galactosidase 15); beta-galactosidase (TAIR:AT1G31740.1); Has 1231 Blast hits to 1190 proteins in 254 species: Archae - 11; Bacteria - 321; Metazoa - 340; Fungi - 120; Plants - 378; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT5G20710.1p  transcript_id AT5G20710.1  protein_id AT5G20710.1p  transcript_id AT5G20710.1  
At5g20720	chr5:007015015	0.0	W/7015015-7015188,7015459-7015638,7015738-7015893,7015981-7016058,7016181-7016354	AT5G20720.1  CDS  gene_syn ATCPN21, CHAPERONIN 10, CHAPERONIN 20, CHCPN10, CHLOROPLAST CHAPERONIN 10, CPN10, CPN20, CPN21, T1M15.120, T1M15_120  gene CPN20  function Encodes a chloroplast co-chaperonin with similarity to CPN21 from spinach, E.coli GroES.  go_component mitochondrion|GO:0005739|18385124|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component chloroplast|GO:0009507|10205903|IDA  go_component chloroplast|GO:0009507|9989238|ISS  go_process response to cold|GO:0009409|14535880|IEP  go_function calmodulin binding|GO:0005516|11782485|TAS  product CPN20 (CHAPERONIN 20); calmodulin binding  note CHAPERONIN 20 (CPN20); FUNCTIONS IN: calmodulin binding; INVOLVED IN: response to cadmium ion, response to cold; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Chaperonin Cpn10, conserved site (InterPro:IPR018369), Chaperonin 21, chloroplast (InterPro:IPR017416), Chaperonin Cpn10 (InterPro:IPR001476); BEST Arabidopsis thaliana protein match is: CPN10 (CHAPERONIN 10); chaperone binding (TAIR:AT1G14980.1); Has 13072 Blast hits to 6698 proteins in 1752 species: Archae - 32; Bacteria - 7698; Metazoa - 479; Fungi - 148; Plants - 261; Viruses - 4; Other Eukaryotes - 4450 (source: NCBI BLink).  protein_id AT5G20720.1p  transcript_id AT5G20720.1  protein_id AT5G20720.1p  transcript_id AT5G20720.1  
At5g20720	chr5:007015015	0.0	W/7015015-7015188,7015459-7015638,7015738-7015893,7015981-7016058,7016181-7016354	AT5G20720.2  CDS  gene_syn ATCPN21, CHAPERONIN 10, CHAPERONIN 20, CHCPN10, CHLOROPLAST CHAPERONIN 10, CPN10, CPN20, CPN21, T1M15.120, T1M15_120  gene CPN20  function Encodes a chloroplast co-chaperonin with similarity to CPN21 from spinach, E.coli GroES.  go_component mitochondrion|GO:0005739|18385124|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component chloroplast|GO:0009507|10205903|IDA  go_component chloroplast|GO:0009507|9989238|ISS  go_process response to cold|GO:0009409|14535880|IEP  go_function calmodulin binding|GO:0005516|11782485|TAS  product CPN20 (CHAPERONIN 20); calmodulin binding  note CHAPERONIN 20 (CPN20); FUNCTIONS IN: calmodulin binding; INVOLVED IN: response to cadmium ion, response to cold; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Chaperonin Cpn10, conserved site (InterPro:IPR018369), Chaperonin 21, chloroplast (InterPro:IPR017416), Chaperonin Cpn10 (InterPro:IPR001476); BEST Arabidopsis thaliana protein match is: CPN10 (CHAPERONIN 10); chaperone binding (TAIR:AT1G14980.1); Has 13072 Blast hits to 6698 proteins in 1752 species: Archae - 32; Bacteria - 7698; Metazoa - 479; Fungi - 148; Plants - 261; Viruses - 4; Other Eukaryotes - 4450 (source: NCBI BLink).  protein_id AT5G20720.2p  transcript_id AT5G20720.2  protein_id AT5G20720.2p  transcript_id AT5G20720.2  
At5g20730	chr5:007021459	0.0	C/7021459-7021504,7021026-7021138,7020830-7020925,7020669-7020725,7020425-7020580,7020253-7020337,7020071-7020161,7019821-7019988,7019534-7019729,7019297-7019435,7017241-7019219,7016972-7017162,7016704-7016884	AT5G20730.1  CDS  gene_syn ARF7, AUXIN RESPONSE FACTOR 7, AUXIN-REGULATED TRANSCRIPTIONAL ACTIVATOR 7, AUXIN-RESPONSIVE TRANSCRIPTIONAL ACTIVATOR 7, BIP, BIPOSTO, IAA21, IAA23, IAA25, INDOLE ACETIC ACID 21, INDOLE-3-ACETIC ACID INDUCIBLE 23, INDOLE-3-ACETIC ACID INDUCIBLE 25, MASSUGU 1, MSG1, NON-PHOTOTROPHIC HYPOCOTYL, NPH4, T1M15.130, T1M15_130, TIR5, TRANSPORT INHIBITOR RESPONSE 5  gene NPH4  function Encodes an auxin-regulated transcriptional activator. Activates expression of IAA1 and IAA9 in the presence of auxin. Mutants affect blue light and gravitropic and auxin mediated growth responses. Together with AUX19, it is involved in the response to ethylene. In the arf7 arf19 double mutant, several auxin-responsive genes (e.g. IAA5, LBD16, LBD29 and LBD33) are no longer upregulated by auxin.  go_component nucleus|GO:0005634|17259263|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|10318972|TAS  go_process gravitropism|GO:0009630|15923351|TAS  go_process phototropism|GO:0009638|10364413|IMP  go_process response to ethylene stimulus|GO:0009723|16461383|IGI  go_process response to auxin stimulus|GO:0009733|10810148|IMP  go_process response to auxin stimulus|GO:0009733|15659631|IMP  go_process response to auxin stimulus|GO:0009733|17259263|IMP  go_process blue light signaling pathway|GO:0009785|10364413|IMP  go_process lateral root primordium development|GO:0010386|17259263|IGI  go_process regulation of growth|GO:0040008|10810148|TAS  go_process leaf development|GO:0048366|15960621|IGI  go_process lateral root development|GO:0048527|15960621|IGI  go_function DNA binding|GO:0003677|17259263|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|15923351|IMP  go_function transcription regulator activity|GO:0030528|10810148|ISS  product NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); DNA binding / transcription activator/ transcription factor/ transcription regulator  note NON-PHOTOTROPHIC HYPOCOTYL (NPH4); FUNCTIONS IN: transcription factor activity, transcription regulator activity, transcription activator activity, DNA binding; INVOLVED IN: in 10 processes; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: ARF19 (AUXIN RESPONSE FACTOR 19); DNA binding / transcription factor (TAIR:AT1G19220.1); Has 115502 Blast hits to 48069 proteins in 1430 species: Archae - 40; Bacteria - 8133; Metazoa - 43208; Fungi - 9740; Plants - 6973; Viruses - 397; Other Eukaryotes - 47011 (source: NCBI BLink).  protein_id AT5G20730.1p  transcript_id AT5G20730.1  protein_id AT5G20730.1p  transcript_id AT5G20730.1  
At5g20730	chr5:007021459	0.0	C/7021459-7021504,7021026-7021138,7020830-7020925,7020669-7020725,7020425-7020580,7020253-7020337,7020071-7020161,7019821-7019988,7019534-7019729,7019297-7019435,7017241-7019219,7016972-7017162,7016769-7016884,7016704-7016723	AT5G20730.3  CDS  gene_syn ARF7, AUXIN RESPONSE FACTOR 7, AUXIN-REGULATED TRANSCRIPTIONAL ACTIVATOR 7, AUXIN-RESPONSIVE TRANSCRIPTIONAL ACTIVATOR 7, BIP, BIPOSTO, IAA21, IAA23, IAA25, INDOLE ACETIC ACID 21, INDOLE-3-ACETIC ACID INDUCIBLE 23, INDOLE-3-ACETIC ACID INDUCIBLE 25, MASSUGU 1, MSG1, NON-PHOTOTROPHIC HYPOCOTYL, NPH4, T1M15.130, T1M15_130, TIR5, TRANSPORT INHIBITOR RESPONSE 5  gene NPH4  function Encodes an auxin-regulated transcriptional activator. Activates expression of IAA1 and IAA9 in the presence of auxin. Mutants affect blue light and gravitropic and auxin mediated growth responses. Together with AUX19, it is involved in the response to ethylene. In the arf7 arf19 double mutant, several auxin-responsive genes (e.g. IAA5, LBD16, LBD29 and LBD33) are no longer upregulated by auxin.  go_component nucleus|GO:0005634|17259263|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|10318972|TAS  go_process gravitropism|GO:0009630|15923351|TAS  go_process phototropism|GO:0009638|10364413|IMP  go_process response to ethylene stimulus|GO:0009723|16461383|IGI  go_process response to auxin stimulus|GO:0009733|10810148|IMP  go_process response to auxin stimulus|GO:0009733|15659631|IMP  go_process response to auxin stimulus|GO:0009733|17259263|IMP  go_process blue light signaling pathway|GO:0009785|10364413|IMP  go_process lateral root primordium development|GO:0010386|17259263|IGI  go_process regulation of growth|GO:0040008|10810148|TAS  go_process leaf development|GO:0048366|15960621|IGI  go_process lateral root development|GO:0048527|15960621|IGI  go_function DNA binding|GO:0003677|17259263|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|15923351|IMP  go_function transcription regulator activity|GO:0030528|10810148|ISS  product NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); DNA binding / transcription activator/ transcription factor/ transcription regulator  note NON-PHOTOTROPHIC HYPOCOTYL (NPH4); FUNCTIONS IN: transcription factor activity, transcription regulator activity, transcription activator activity, DNA binding; INVOLVED IN: in 10 processes; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: ARF19 (AUXIN RESPONSE FACTOR 19); DNA binding / transcription factor (TAIR:AT1G19220.1); Has 115514 Blast hits to 48083 proteins in 1430 species: Archae - 40; Bacteria - 8119; Metazoa - 43207; Fungi - 9734; Plants - 6998; Viruses - 395; Other Eukaryotes - 47021 (source: NCBI BLink).  protein_id AT5G20730.3p  transcript_id AT5G20730.3  protein_id AT5G20730.3p  transcript_id AT5G20730.3  
At5g20730	chr5:007021459	0.0	C/7021459-7021504,7021026-7021138,7020830-7020925,7020669-7020725,7020425-7020580,7020253-7020337,7020071-7020161,7019824-7019988,7019534-7019729,7019297-7019435,7017241-7019219,7016972-7017162,7016704-7016884	AT5G20730.2  CDS  gene_syn ARF7, AUXIN RESPONSE FACTOR 7, AUXIN-REGULATED TRANSCRIPTIONAL ACTIVATOR 7, AUXIN-RESPONSIVE TRANSCRIPTIONAL ACTIVATOR 7, BIP, BIPOSTO, IAA21, IAA23, IAA25, INDOLE ACETIC ACID 21, INDOLE-3-ACETIC ACID INDUCIBLE 23, INDOLE-3-ACETIC ACID INDUCIBLE 25, MASSUGU 1, MSG1, NON-PHOTOTROPHIC HYPOCOTYL, NPH4, T1M15.130, T1M15_130, TIR5, TRANSPORT INHIBITOR RESPONSE 5  gene NPH4  function Encodes an auxin-regulated transcriptional activator. Activates expression of IAA1 and IAA9 in the presence of auxin. Mutants affect blue light and gravitropic and auxin mediated growth responses. Together with AUX19, it is involved in the response to ethylene. In the arf7 arf19 double mutant, several auxin-responsive genes (e.g. IAA5, LBD16, LBD29 and LBD33) are no longer upregulated by auxin.  go_component nucleus|GO:0005634|17259263|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|10318972|TAS  go_process gravitropism|GO:0009630|15923351|TAS  go_process phototropism|GO:0009638|10364413|IMP  go_process response to ethylene stimulus|GO:0009723|16461383|IGI  go_process response to auxin stimulus|GO:0009733|10810148|IMP  go_process response to auxin stimulus|GO:0009733|15659631|IMP  go_process response to auxin stimulus|GO:0009733|17259263|IMP  go_process blue light signaling pathway|GO:0009785|10364413|IMP  go_process lateral root primordium development|GO:0010386|17259263|IGI  go_process regulation of growth|GO:0040008|10810148|TAS  go_process leaf development|GO:0048366|15960621|IGI  go_process lateral root development|GO:0048527|15960621|IGI  go_function DNA binding|GO:0003677|17259263|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|15923351|IMP  go_function transcription regulator activity|GO:0030528|10810148|ISS  product NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); DNA binding / transcription activator/ transcription factor/ transcription regulator  note NON-PHOTOTROPHIC HYPOCOTYL (NPH4); FUNCTIONS IN: transcription factor activity, transcription regulator activity, transcription activator activity, DNA binding; INVOLVED IN: in 10 processes; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: ARF19 (AUXIN RESPONSE FACTOR 19); DNA binding / transcription factor (TAIR:AT1G19220.1); Has 115514 Blast hits to 48083 proteins in 1430 species: Archae - 40; Bacteria - 8119; Metazoa - 43207; Fungi - 9734; Plants - 6998; Viruses - 395; Other Eukaryotes - 47021 (source: NCBI BLink).  protein_id AT5G20730.2p  transcript_id AT5G20730.2  protein_id AT5G20730.2p  transcript_id AT5G20730.2  
At5g20736	chr5:007024329	0.0	C/7024329-7024472	AT5G20736.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G20736.1p  transcript_id AT5G20736.1  protein_id AT5G20736.1p  transcript_id AT5G20736.1  
At5g20740	chr5:007025867	0.0	C/7025867-7026484	AT5G20740.1  CDS  gene_syn T1M15.140, T1M15_140  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT4G25260.1); Has 468 Blast hits to 463 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 468; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G20740.1p  transcript_id AT5G20740.1  protein_id AT5G20740.1p  transcript_id AT5G20740.1  
At5g20750	chr5:007027773	0.0	W/7027773-7031290	AT5G20750.1  mRNA_TE_gene  pseudo  gene_syn T1M15.150, T1M15_150  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G42690.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G04130.1); similar to hypothetical protein 23.t00036 [Brassica oleracea] (GB:ABD65624.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At5g20760	chr5:007032527	0.0	W/7032527-7033189	AT5G20760.1  mRNA_TE_gene  pseudo  gene_syn T1M15.160, T1M15_160  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42700.1); similar to hypothetical protein 40.t00047 [Brassica oleracea] (GB:ABD65162.1); contains domain F-box domain (SSF81383)  
At5g20770	chr5:007034188	0.0	C/7034188-7034883	AT5G20770.1  mRNA_TE_gene  pseudo  gene_syn T1M15.170, T1M15_170  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G34820.1); similar to hypothetical protein 40.t00047 [Brassica oleracea] (GB:ABD65162.1)  
At5g20780	chr5:007035605	0.0	C/7035605-7038469	AT5G20780.1  mRNA_TE_gene  pseudo  gene_syn T1M15.180, T1M15_180  note Transposable element gene, Mutator-like transposase family, has a 3.4e-66 P-value blast match to Q9ZQM3 /24-192 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At5g20790	chr5:007040046	0.0	C/7040046-7040627	AT5G20790.1  CDS  gene_syn T1M15.190, T1M15_190  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43110.1); Has 11 Blast hits to 11 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G20790.1p  transcript_id AT5G20790.1  protein_id AT5G20790.1p  transcript_id AT5G20790.1  
At5g20800	chr5:007041114	0.0	W/7041114-7042676	AT5G20800.1  mRNA_TE_gene  pseudo  gene_syn T1M15.200, T1M15_200  note Transposable element gene, pseudogene, similar to putative reverse transcriptase, predicted non-LTR reverse ranscriptase sequence fragments; blastp match of 31% identity and 1.8e-59 P-value to GP|20279456|gb|AAM18736.1|AC092548_14|AC092548 putative reverse transcriptase {Oryza sativa (japonica cultivar-group)}  
At5g20810	chr5:007044791	0.0	W/7044791-7045256,7045524-7045555	AT5G20810.1  CDS  gene_syn T1M15.210, T1M15_210  go_component peroxisome|GO:0005777|12154131|IDA  go_process response to auxin stimulus|GO:0009733||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function calmodulin binding|GO:0005516||ISS  product auxin-responsive protein, putative / small auxin up RNA (SAUR_B)  note auxin-responsive protein, putative / small auxin up RNA (SAUR_B); FUNCTIONS IN: calmodulin binding; INVOLVED IN: response to auxin stimulus; LOCATED IN: peroxisome; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein-related (TAIR:AT3G43120.1); Has 755 Blast hits to 744 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 754; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G20810.1p  transcript_id AT5G20810.1  protein_id AT5G20810.1p  transcript_id AT5G20810.1  
At5g20810	chr5:007044791	0.0	W/7044791-7045363	AT5G20810.2  CDS  gene_syn T1M15.210, T1M15_210  go_component peroxisome|GO:0005777|12154131|IDA  go_process response to auxin stimulus|GO:0009733||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function calmodulin binding|GO:0005516||ISS  product auxin-responsive protein, putative / small auxin up RNA (SAUR_B)  note auxin-responsive protein, putative / small auxin up RNA (SAUR_B); FUNCTIONS IN: calmodulin binding; INVOLVED IN: response to auxin stimulus; LOCATED IN: peroxisome; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein-related (TAIR:AT3G43120.1); Has 755 Blast hits to 744 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 754; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G20810.2p  transcript_id AT5G20810.2  protein_id AT5G20810.2p  transcript_id AT5G20810.2  
At5g20820	chr5:007046911	0.0	C/7046911-7047294	AT5G20820.1  CDS  gene_syn T1M15.220, T1M15_220  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive protein-related  note auxin-responsive protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein-related (TAIR:AT1G17345.1); Has 54 Blast hits to 54 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G20820.1p  transcript_id AT5G20820.1  protein_id AT5G20820.1p  transcript_id AT5G20820.1  
At5g20830	chr5:007053929	0.0	C/7053929-7054032,7053724-7053850,7053475-7053626,7053206-7053398,7052790-7053125,7052604-7052699,7052350-7052523,7052152-7052268,7051896-7052062,7051585-7051809,7050944-7051507,7050723-7050861,7050599-7050631	AT5G20830.1  CDS  gene_syn ASUS1, SUCROSE SYNTHASE 1, SUS1, T1M15.230, T1M15_230, atsus1  gene SUS1  function Encodes a protein with sucrose synthase activity (SUS1).  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cellular_component|GO:0005575||ND  go_process response to hypoxia|GO:0001666|17257168|TAS  go_process sucrose biosynthetic process|GO:0005986||ISS  go_process response to osmotic stress|GO:0006970|10567234|IEP  go_process response to cold|GO:0009409|10567234|IEP  go_process response to flooding|GO:0009413|8220487|IEP  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function sucrose synthase activity|GO:0016157|10567234|ISS  go_function sucrose synthase activity|GO:0016157|17257168|IDA  go_function sucrose synthase activity|GO:0016157|17257168|IGI  go_function sucrose synthase activity|GO:0016157|17499718|IDA  go_function sucrose synthase activity|GO:0016157||ISS  product SUS1 (SUCROSE SYNTHASE 1); UDP-glycosyltransferase/ sucrose synthase  note SUCROSE SYNTHASE 1 (SUS1); FUNCTIONS IN: UDP-glycosyltransferase activity, sucrose synthase activity; INVOLVED IN: in 6 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sucrose synthase, plants and cyanobacteria (InterPro:IPR012820), Sucrose synthase (InterPro:IPR000368), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: SUS4; UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups (TAIR:AT3G43190.1); Has 5298 Blast hits to 5293 proteins in 917 species: Archae - 181; Bacteria - 2859; Metazoa - 87; Fungi - 44; Plants - 466; Viruses - 0; Other Eukaryotes - 1661 (source: NCBI BLink).  protein_id AT5G20830.1p  transcript_id AT5G20830.1  protein_id AT5G20830.1p  transcript_id AT5G20830.1  
At5g20830	chr5:007053929	0.0	C/7053929-7054032,7053724-7053850,7053475-7053626,7053206-7053398,7052790-7053125,7052604-7052699,7052350-7052523,7052152-7052268,7051896-7052062,7051585-7051809,7050944-7051507,7050723-7050861,7050599-7050631	AT5G20830.2  CDS  gene_syn ASUS1, SUCROSE SYNTHASE 1, SUS1, T1M15.230, T1M15_230, atsus1  gene SUS1  function Encodes a protein with sucrose synthase activity (SUS1).  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cellular_component|GO:0005575||ND  go_process response to hypoxia|GO:0001666|17257168|TAS  go_process sucrose biosynthetic process|GO:0005986||ISS  go_process response to osmotic stress|GO:0006970|10567234|IEP  go_process response to cold|GO:0009409|10567234|IEP  go_process response to flooding|GO:0009413|8220487|IEP  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function sucrose synthase activity|GO:0016157|10567234|ISS  go_function sucrose synthase activity|GO:0016157|17257168|IDA  go_function sucrose synthase activity|GO:0016157|17257168|IGI  go_function sucrose synthase activity|GO:0016157|17499718|IDA  go_function sucrose synthase activity|GO:0016157||ISS  product SUS1 (SUCROSE SYNTHASE 1); UDP-glycosyltransferase/ sucrose synthase  note SUCROSE SYNTHASE 1 (SUS1); FUNCTIONS IN: UDP-glycosyltransferase activity, sucrose synthase activity; INVOLVED IN: in 6 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sucrose synthase, plants and cyanobacteria (InterPro:IPR012820), Sucrose synthase (InterPro:IPR000368), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: SUS4; UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups (TAIR:AT3G43190.1); Has 5298 Blast hits to 5293 proteins in 917 species: Archae - 181; Bacteria - 2859; Metazoa - 87; Fungi - 44; Plants - 466; Viruses - 0; Other Eukaryotes - 1661 (source: NCBI BLink).  protein_id AT5G20830.2p  transcript_id AT5G20830.2  protein_id AT5G20830.2p  transcript_id AT5G20830.2  
At5g20840	chr5:007068471	0.0	C/7068471-7068572,7068123-7068324,7067852-7068017,7067398-7067620,7066938-7067014,7066503-7066690,7066306-7066403,7065953-7066086,7065723-7065851,7065058-7065409,7064097-7064218,7063884-7063994,7063144-7063335,7062683-7062859,7062278-7062392,7061638-7061745	AT5G20840.1  CDS  gene_syn F22D1.10, F22D1_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|GO:0004439||ISS  product phosphoinositide phosphatase family protein  note phosphoinositide phosphatase family protein; FUNCTIONS IN: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Synaptojanin, N-terminal (InterPro:IPR002013); BEST Arabidopsis thaliana protein match is: phosphoinositide phosphatase family protein (TAIR:AT3G43220.1); Has 1343 Blast hits to 1189 proteins in 165 species: Archae - 0; Bacteria - 12; Metazoa - 532; Fungi - 400; Plants - 148; Viruses - 0; Other Eukaryotes - 251 (source: NCBI BLink).  protein_id AT5G20840.1p  transcript_id AT5G20840.1  protein_id AT5G20840.1p  transcript_id AT5G20840.1  
At5g20850	chr5:007072765	0.0	C/7072765-7072860,7072216-7072360,7071995-7072105,7071829-7071920,7071603-7071697,7071404-7071517,7071186-7071315,7070977-7071098,7070758-7070881	AT5G20850.1  CDS  gene_syn ATRAD51, F22D1.20, F22D1_20, RAD51  gene ATRAD51  function Encodes a homolog of yeast RAD51. Its mRNA is most abundant in early flower buds and is expressed at high levels in exponentially growing cells in suspension cultures and is induced in response to gamma radiation.  go_function nucleotide binding|GO:0000166||IEA  go_function DNA binding|GO:0003677||IEA  go_function damaged DNA binding|GO:0003684||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function DNA-dependent ATPase activity|GO:0008094||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function sequence-specific DNA binding|GO:0043565||IEA  go_component nucleus|GO:0005634|16442857|IEP  go_process DNA metabolic process|GO:0006259|9520262|TAS  go_process DNA repair|GO:0006281||ISS  go_process double-strand break repair|GO:0006302|17921313|IMP  go_process response to radiation|GO:0009314|9520262|NAS  go_process response to gamma radiation|GO:0010332|17227544|IEP  go_function damaged DNA binding|GO:0003684||ISS  product ATRAD51; ATP binding / DNA binding / DNA-dependent ATPase/ damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / sequence-specific DNA binding  note ATRAD51; FUNCTIONS IN: in 8 functions; INVOLVED IN: double-strand break repair, DNA repair, response to gamma radiation, response to radiation, DNA metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: DNA repair Rad51/transcription factor NusA, alpha-helical (InterPro:IPR010995), ATPase, AAA+ type, core (InterPro:IPR003593), Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), DNA repair and recombination, RecA-like (InterPro:IPR016467), Rad51, C-terminal (InterPro:IPR013632), RecA bacterial DNA recombination (InterPro:IPR001553), DNA repair protein RAD51 (InterPro:IPR011941); BEST Arabidopsis thaliana protein match is: DMC1 (DISRUPTION OF MEIOTIC CONTROL 1); ATP binding / DNA binding / DNA-dependent ATPase/ damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding / protein binding (TAIR:AT3G22880.1); Has 8428 Blast hits to 8357 proteins in 2415 species: Archae - 529; Bacteria - 4926; Metazoa - 684; Fungi - 317; Plants - 379; Viruses - 22; Other Eukaryotes - 1571 (source: NCBI BLink).  protein_id AT5G20850.1p  transcript_id AT5G20850.1  protein_id AT5G20850.1p  transcript_id AT5G20850.1  
At5g20852	chr5:007073530	0.0	C/7073530-7073601	AT5G20852.1  tRNA  gene_syn 68077.TRNA-CYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Cys (anticodon: GCA)  transcript_id AT5G20852.1  
At5g20854	chr5:007073943	0.0	C/7073943-7074014	AT5G20854.1  tRNA  gene_syn 68077.TRNA-CYS-2, ATC2  gene ATC2  function a nuclear-encoded, cytoplasmic tRNA gene for cysteine  go_component cytoplasm|GO:0005737|8980505|ISS  go_process translational initiation|GO:0006413|8980505|ISS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980505|TAS  product ATC2; pre-tRNA  note tRNA-Cys (anticodon: GCA)  transcript_id AT5G20854.1  
At5g20856	chr5:007074356	0.0	C/7074356-7074427	AT5G20856.1  tRNA  gene_syn 68077.TRNA-CYS-3  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Cys (anticodon: GCA)  transcript_id AT5G20856.1  
At5g20858	chr5:007074772	0.0	C/7074772-7074843	AT5G20858.1  tRNA  gene_syn 68077.TRNA-CYS-4  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Cys (anticodon: GCA)  transcript_id AT5G20858.1  
At5g20860	chr5:007078750	0.0	C/7078750-7079077,7077914-7078345,7077755-7077829,7077036-7077668,7076890-7076960	AT5G20860.1  CDS  gene_syn F22D1.30, F22D1_30  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase inhibitor (InterPro:IPR006501), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT2G45220.1); Has 1288 Blast hits to 1260 proteins in 176 species: Archae - 0; Bacteria - 238; Metazoa - 1; Fungi - 128; Plants - 921; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G20860.1p  transcript_id AT5G20860.1  protein_id AT5G20860.1p  transcript_id AT5G20860.1  
At5g20870	chr5:007081387	0.0	C/7081387-7081739,7080037-7081189	AT5G20870.1  CDS  gene_syn F22D1.40, F22D1_40  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT4G31140.1); Has 1735 Blast hits to 1680 proteins in 134 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 40; Plants - 1686; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G20870.1p  transcript_id AT5G20870.1  protein_id AT5G20870.1p  transcript_id AT5G20870.1  
At5g20880	chr5:007082104	0.0	C/7082104-7083226	AT5G20880.1  mRNA_TE_gene  pseudo  gene_syn F22D1.4  note Transposable element gene, retrotransposon family  
At5g20885	chr5:007084133	0.0	C/7084133-7084663	AT5G20885.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G43430.1); Has 3625 Blast hits to 3612 proteins in 180 species: Archae - 0; Bacteria - 0; Metazoa - 1182; Fungi - 228; Plants - 1867; Viruses - 15; Other Eukaryotes - 333 (source: NCBI BLink).  protein_id AT5G20885.1p  transcript_id AT5G20885.1  protein_id AT5G20885.1p  transcript_id AT5G20885.1  
At5g20890	chr5:007089901	0.0	C/7089901-7089906,7089760-7089816,7089598-7089663,7089397-7089508,7089167-7089295,7088997-7089068,7088710-7088825,7088408-7088484,7087669-7088154,7087254-7087569,7087020-7087166	AT5G20890.1  CDS  gene_syn F22D1.60, F22D1_60  go_component cell wall|GO:0005618|16287169|IDA  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_process protein folding|GO:0006457||IEA  go_process cellular protein metabolic process|GO:0044267||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function unfolded protein binding|GO:0051082||IEA  product chaperonin, putative  note chaperonin, putative; FUNCTIONS IN: unfolded protein binding, protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: anchored to plasma membrane, cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, beta subunit (InterPro:IPR012716), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: chaperonin, putative (TAIR:AT3G11830.1); Has 14919 Blast hits to 14665 proteins in 2560 species: Archae - 394; Bacteria - 6456; Metazoa - 1928; Fungi - 956; Plants - 472; Viruses - 0; Other Eukaryotes - 4713 (source: NCBI BLink).  protein_id AT5G20890.1p  transcript_id AT5G20890.1  protein_id AT5G20890.1p  transcript_id AT5G20890.1  
At5g20900	chr5:007090883	0.0	W/7090883-7091007,7091398-7091500,7091575-7091755,7091847-7091904,7092105-7092201	AT5G20900.1  CDS  gene_syn F22D1.70, F22D1_70, JASMONATE-ZIM-DOMAIN PROTEIN 12, JAZ12, TIFY3B  gene JAZ12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product JAZ12 (JASMONATE-ZIM-DOMAIN PROTEIN 12)  note JASMONATE-ZIM-DOMAIN PROTEIN 12 (JAZ12); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: JAZ11 (JASMONATE-ZIM-DOMAIN PROTEIN 11) (TAIR:AT3G43440.1); Has 247 Blast hits to 242 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 245; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G20900.1p  transcript_id AT5G20900.1  protein_id AT5G20900.1p  transcript_id AT5G20900.1  
At5g20910	chr5:007094143	0.0	C/7094143-7094310,7093666-7093870,7093381-7093577,7092894-7093106,7092663-7092812	AT5G20910.1  CDS  gene_syn F22D1.80, F22D1_80  go_component nucleus|GO:0005634|14617066|IDA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G19950.1); Has 6524 Blast hits to 6509 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 2244; Fungi - 556; Plants - 2592; Viruses - 49; Other Eukaryotes - 1083 (source: NCBI BLink).  protein_id AT5G20910.1p  transcript_id AT5G20910.1  protein_id AT5G20910.1p  transcript_id AT5G20910.1  
At5g20920	chr5:007096623	0.0	C/7096623-7096661,7096381-7096492,7096234-7096289,7096077-7096131,7095888-7095982,7095652-7095797,7095392-7095534,7095215-7095300,7094994-7095065	AT5G20920.2  CDS  gene_syn EIF2 BETA, EMB1401, F22D1.90, F22D1_90, embryo defective 1401  gene EIF2 BETA  function protein synthesis initiation factor eIF2 beta  go_component plasma membrane|GO:0005886|17317660|IDA  go_process translational initiation|GO:0006413||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function translation initiation factor activity|GO:0003743||ISS  product EIF2 BETA; translation initiation factor  note EIF2 BETA; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: embryonic development ending in seed dormancy, translational initiation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF2/IF5, N-terminal (InterPro:IPR016189), Translation initiation factor IF2/IF5, zinc-binding (InterPro:IPR016190), Translation initiation factor IF2/IF5 (InterPro:IPR002735); BEST Arabidopsis thaliana protein match is: translation initiation factor (TAIR:AT3G07920.1); Has 946 Blast hits to 944 proteins in 254 species: Archae - 175; Bacteria - 0; Metazoa - 298; Fungi - 174; Plants - 97; Viruses - 2; Other Eukaryotes - 200 (source: NCBI BLink).  protein_id AT5G20920.2p  transcript_id AT5G20920.2  protein_id AT5G20920.2p  transcript_id AT5G20920.2  
At5g20920	chr5:007096623	0.0	C/7096623-7096661,7096381-7096495,7096234-7096289,7096077-7096131,7095888-7095982,7095652-7095797,7095392-7095534,7095215-7095300,7094994-7095065	AT5G20920.1  CDS  gene_syn EIF2 BETA, EMB1401, F22D1.90, F22D1_90, embryo defective 1401  gene EIF2 BETA  function protein synthesis initiation factor eIF2 beta  go_component plasma membrane|GO:0005886|17317660|IDA  go_process translational initiation|GO:0006413||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function translation initiation factor activity|GO:0003743||ISS  product EIF2 BETA; translation initiation factor  note EIF2 BETA; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: embryonic development ending in seed dormancy, translational initiation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF2/IF5, N-terminal (InterPro:IPR016189), Translation initiation factor IF2/IF5, zinc-binding (InterPro:IPR016190), Translation initiation factor IF2/IF5 (InterPro:IPR002735); BEST Arabidopsis thaliana protein match is: translation initiation factor (TAIR:AT3G07920.1); Has 942 Blast hits to 940 proteins in 254 species: Archae - 175; Bacteria - 0; Metazoa - 298; Fungi - 172; Plants - 97; Viruses - 2; Other Eukaryotes - 198 (source: NCBI BLink).  protein_id AT5G20920.1p  transcript_id AT5G20920.1  protein_id AT5G20920.1p  transcript_id AT5G20920.1  
At5g20920	chr5:007096623	0.0	C/7096623-7096661,7096381-7096495,7096234-7096289,7096077-7096131,7095888-7095982,7095652-7095797,7095392-7095534,7095215-7095300,7094994-7095065	AT5G20920.3  CDS  gene_syn EIF2 BETA, EMB1401, F22D1.90, F22D1_90, embryo defective 1401  gene EIF2 BETA  function protein synthesis initiation factor eIF2 beta  go_component plasma membrane|GO:0005886|17317660|IDA  go_process translational initiation|GO:0006413||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function translation initiation factor activity|GO:0003743||ISS  product EIF2 BETA; translation initiation factor  note EIF2 BETA; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: embryonic development ending in seed dormancy, translational initiation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF2/IF5, N-terminal (InterPro:IPR016189), Translation initiation factor IF2/IF5, zinc-binding (InterPro:IPR016190), Translation initiation factor IF2/IF5 (InterPro:IPR002735); BEST Arabidopsis thaliana protein match is: translation initiation factor (TAIR:AT3G07920.1); Has 942 Blast hits to 940 proteins in 254 species: Archae - 175; Bacteria - 0; Metazoa - 298; Fungi - 172; Plants - 97; Viruses - 2; Other Eukaryotes - 198 (source: NCBI BLink).  protein_id AT5G20920.3p  transcript_id AT5G20920.3  protein_id AT5G20920.3p  transcript_id AT5G20920.3  
At5g20930	chr5:007098213	0.0	W/7098213-7098464,7098722-7098811,7098951-7099154,7099425-7099475,7099673-7099780,7099890-7099934,7100592-7100704,7101015-7101081,7101178-7101247,7101374-7101468,7101562-7101741,7101822-7102032,7102117-7102381,7102479-7102533,7102611-7102775,7102875-7102970	AT5G20930.1  CDS  gene_syn F22D1.100, F22D1_100, PROTEIN KINASE TSL, TOUSLED, TSL  gene TSL  function Nuclear serine/threonine protein kinase that requires a coiled-coil region for oligomerization and catalytic activity. Required for leaf and flower development. Expression localized to the developing style by stage 13.  go_component chloroplast|GO:0009507|15028209|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleus|GO:0005634|8252629|TAS  go_component nucleus|GO:0005634|9038200|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_function protein serine/threonine kinase activity|GO:0004674|9038200|IDA  go_function kinase activity|GO:0016301||ISS  product TSL (TOUSLED); kinase/ protein serine/threonine kinase  note TOUSLED (TSL); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus, chloroplast, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: AtAUR3 (ATAURORA3); ATP binding / histone kinase(H3-S10 specific) / protein kinase (TAIR:AT2G45490.1); Has 88663 Blast hits to 87363 proteins in 3232 species: Archae - 50; Bacteria - 7729; Metazoa - 38508; Fungi - 7847; Plants - 17680; Viruses - 486; Other Eukaryotes - 16363 (source: NCBI BLink).  protein_id AT5G20930.1p  transcript_id AT5G20930.1  protein_id AT5G20930.1p  transcript_id AT5G20930.1  
At5g20935	chr5:007103487	0.0	W/7103487-7103698,7103831-7103945	AT5G20935.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 66 Blast hits to 66 proteins in 33 species: Archae - 0; Bacteria - 51; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G20935.1p  transcript_id AT5G20935.1  protein_id AT5G20935.1p  transcript_id AT5G20935.1  
At5g20940	chr5:007106422	0.0	C/7106422-7106653,7106144-7106348,7105971-7106061,7105763-7105905,7105445-7105688,7105246-7105350,7104999-7105181,7104731-7104935,7104076-7104548	AT5G20940.1  CDS  gene_syn F22D1.110, F22D1_110  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 3 protein  note glycosyl hydrolase family 3 protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 3 protein (TAIR:AT5G20950.2); Has 5962 Blast hits to 5603 proteins in 865 species: Archae - 20; Bacteria - 2970; Metazoa - 6; Fungi - 880; Plants - 280; Viruses - 0; Other Eukaryotes - 1806 (source: NCBI BLink).  protein_id AT5G20940.1p  transcript_id AT5G20940.1  protein_id AT5G20940.1p  transcript_id AT5G20940.1  
At5g20950	chr5:007110562	0.0	C/7110562-7110775,7110265-7110469,7110038-7110128,7109797-7109939,7108996-7109239,7108812-7108916,7108538-7108720,7108249-7108453,7107609-7108093	AT5G20950.1  CDS  gene_syn F22D1.120, F22D1_120  go_component cell wall|GO:0005618|14595688|IDA  go_component cell wall|GO:0005618|15593128|IDA  go_component cell wall|GO:0005618|16287169|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 3 protein  note glycosyl hydrolase family 3 protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall, membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 3 protein (TAIR:AT5G20940.1); Has 5898 Blast hits to 5482 proteins in 835 species: Archae - 22; Bacteria - 2895; Metazoa - 6; Fungi - 904; Plants - 282; Viruses - 0; Other Eukaryotes - 1789 (source: NCBI BLink).  protein_id AT5G20950.1p  transcript_id AT5G20950.1  protein_id AT5G20950.1p  transcript_id AT5G20950.1  
At5g20950	chr5:007110562	0.0	C/7110562-7110775,7110265-7110469,7110038-7110128,7109797-7109939,7108996-7109239,7108812-7108916,7108538-7108720,7108249-7108453,7107609-7108093	AT5G20950.2  CDS  gene_syn F22D1.120, F22D1_120  go_component cell wall|GO:0005618|14595688|IDA  go_component cell wall|GO:0005618|15593128|IDA  go_component cell wall|GO:0005618|16287169|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 3 protein  note glycosyl hydrolase family 3 protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall, membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 3 protein (TAIR:AT5G20940.1); Has 5898 Blast hits to 5482 proteins in 835 species: Archae - 22; Bacteria - 2895; Metazoa - 6; Fungi - 904; Plants - 282; Viruses - 0; Other Eukaryotes - 1789 (source: NCBI BLink).  protein_id AT5G20950.2p  transcript_id AT5G20950.2  protein_id AT5G20950.2p  transcript_id AT5G20950.2  
At5g20960	chr5:007116783	0.0	W/7116783-7116969,7117738-7119384,7119461-7119720,7119801-7120010,7120091-7120309,7120399-7121370,7121461-7121553,7121639-7121737,7121826-7122015,7122109-7122338	AT5G20960.1  CDS  gene_syn AAO1, ALDEHYDE OXIDASE, ALDEHYDE OXIDASE 1, AO1, ARABIDOPSIS ALDEHYDE OXIDASE 1, ARABIDOPSIS THALIANA ALDEHYDE OXIDASE 1, ATAO, ATAO1, F22D1.130, F22D1_130  gene AAO1  function Encodes aldehyde oxidase AA01.  go_process auxin biosynthetic process|GO:0009851|9489015|IMP  go_function aldehyde oxidase activity|GO:0004031|10739959|IDA  go_function indole-3-acetaldehyde oxidase activity|GO:0050302|10739959|IDA  product AAO1 (ARABIDOPSIS ALDEHYDE OXIDASE 1); aldehyde oxidase/ indole-3-acetaldehyde oxidase  note ARABIDOPSIS ALDEHYDE OXIDASE 1 (AAO1); FUNCTIONS IN: indole-3-acetaldehyde oxidase activity, aldehyde oxidase activity; INVOLVED IN: auxin biosynthetic process; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde oxidase/xanthine dehydrogenase (InterPro:IPR016208), Ferredoxin (InterPro:IPR001041), Molybdopterin dehydrogenase, FAD-binding (InterPro:IPR002346), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), Oxidoreductase, molybdopterin binding (InterPro:IPR000572), [2Fe-2S]-binding (InterPro:IPR002888), FAD-binding, type 2 (InterPro:IPR016166), CO dehydrogenase flavoprotein, C-terminal (InterPro:IPR005107), 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 (InterPro:IPR016169), Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead (InterPro:IPR000674), Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding (InterPro:IPR008274); BEST Arabidopsis thaliana protein match is: AAO2 (ALDEHYDE OXIDASE 2); aldehyde oxidase (TAIR:AT3G43600.1); Has 13312 Blast hits to 12956 proteins in 795 species: Archae - 161; Bacteria - 6327; Metazoa - 964; Fungi - 76; Plants - 146; Viruses - 0; Other Eukaryotes - 5638 (source: NCBI BLink).  protein_id AT5G20960.1p  transcript_id AT5G20960.1  protein_id AT5G20960.1p  transcript_id AT5G20960.1  
At5g20960	chr5:007116783	0.0	W/7116783-7116969,7117738-7119384,7119461-7119720,7119801-7120010,7120091-7120309,7120399-7121370,7121461-7121553,7121639-7121737,7121826-7122015,7122109-7122338	AT5G20960.2  CDS  gene_syn AAO1, ALDEHYDE OXIDASE, ALDEHYDE OXIDASE 1, AO1, ARABIDOPSIS ALDEHYDE OXIDASE 1, ARABIDOPSIS THALIANA ALDEHYDE OXIDASE 1, ATAO, ATAO1, F22D1.130, F22D1_130  gene AAO1  function Encodes aldehyde oxidase AA01.  go_process auxin biosynthetic process|GO:0009851|9489015|IMP  go_function aldehyde oxidase activity|GO:0004031|10739959|IDA  go_function indole-3-acetaldehyde oxidase activity|GO:0050302|10739959|IDA  product AAO1 (ARABIDOPSIS ALDEHYDE OXIDASE 1); aldehyde oxidase/ indole-3-acetaldehyde oxidase  note ARABIDOPSIS ALDEHYDE OXIDASE 1 (AAO1); FUNCTIONS IN: indole-3-acetaldehyde oxidase activity, aldehyde oxidase activity; INVOLVED IN: auxin biosynthetic process; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde oxidase/xanthine dehydrogenase (InterPro:IPR016208), Ferredoxin (InterPro:IPR001041), Molybdopterin dehydrogenase, FAD-binding (InterPro:IPR002346), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), Oxidoreductase, molybdopterin binding (InterPro:IPR000572), [2Fe-2S]-binding (InterPro:IPR002888), FAD-binding, type 2 (InterPro:IPR016166), CO dehydrogenase flavoprotein, C-terminal (InterPro:IPR005107), 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 (InterPro:IPR016169), Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead (InterPro:IPR000674), Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding (InterPro:IPR008274); BEST Arabidopsis thaliana protein match is: AAO2 (ALDEHYDE OXIDASE 2); aldehyde oxidase (TAIR:AT3G43600.1); Has 13312 Blast hits to 12956 proteins in 795 species: Archae - 161; Bacteria - 6327; Metazoa - 964; Fungi - 76; Plants - 146; Viruses - 0; Other Eukaryotes - 5638 (source: NCBI BLink).  protein_id AT5G20960.2p  transcript_id AT5G20960.2  protein_id AT5G20960.2p  transcript_id AT5G20960.2  
At5g20970	chr5:007123132	0.0	W/7123132-7123231,7123352-7124001	AT5G20970.1  CDS  gene_syn F22D1.140, F22D1_140  go_component cellular_component|GO:0005575||ND  go_process response to heat|GO:0009408||ISS  go_function molecular_function|GO:0003674||ND  product heat shock family protein  note heat shock family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to heat; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: heat shock family protein (TAIR:AT2G27140.1); Has 582 Blast hits to 582 proteins in 97 species: Archae - 6; Bacteria - 41; Metazoa - 1; Fungi - 0; Plants - 526; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G20970.1p  transcript_id AT5G20970.1  protein_id AT5G20970.1p  transcript_id AT5G20970.1  
At5g20980	chr5:007128214	0.0	C/7128214-7128353,7127591-7127944,7127425-7127512,7127132-7127259,7126611-7127002,7126357-7126520,7125988-7126068,7125753-7125919,7125564-7125669,7125236-7125486,7124962-7125163,7124397-7124762	AT5G20980.1  CDS  gene_syn ATMS3, F22D1.150, F22D1_150, methionine synthase 3  gene ATMS3  function encodes a plastidic methionine synthase, involved in methionine de novo synthesis in the chloroplast  go_component chloroplast|GO:0009507|18431481|IDA  go_process amino acid biosynthetic process|GO:0008652||IEA  go_process methionine biosynthetic process|GO:0009086||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_component chloroplast|GO:0009507|15024005|IDA  go_process methionine biosynthetic process|GO:0009086||ISS  go_function 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity|GO:0003871||ISS  go_function methionine synthase activity|GO:0008705|15024005|IDA  product ATMS3 (methionine synthase 3); 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase/ methionine synthase  note methionine synthase 3 (ATMS3); FUNCTIONS IN: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, methionine synthase activity; INVOLVED IN: methionine biosynthetic process, amino acid biosynthetic process; LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal (InterPro:IPR013215), Methionine synthase, vitamin-B12 independent (InterPro:IPR002629), 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (InterPro:IPR006276); BEST Arabidopsis thaliana protein match is: ATMS1; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase/ methionine synthase (TAIR:AT5G17920.2); Has 2812 Blast hits to 2806 proteins in 943 species: Archae - 113; Bacteria - 1773; Metazoa - 14; Fungi - 149; Plants - 157; Viruses - 2; Other Eukaryotes - 604 (source: NCBI BLink).  protein_id AT5G20980.1p  transcript_id AT5G20980.1  protein_id AT5G20980.1p  transcript_id AT5G20980.1  
At5g20980	chr5:007128214	0.0	C/7128214-7128353,7127591-7127944,7127425-7127512,7127132-7127259,7126611-7127002,7126357-7126520,7125988-7126068,7125753-7125919,7125564-7125669,7125236-7125486,7124962-7125163,7124397-7124762	AT5G20980.2  CDS  gene_syn ATMS3, F22D1.150, F22D1_150, methionine synthase 3  gene ATMS3  function encodes a plastidic methionine synthase, involved in methionine de novo synthesis in the chloroplast  go_component chloroplast|GO:0009507|18431481|IDA  go_process amino acid biosynthetic process|GO:0008652||IEA  go_process methionine biosynthetic process|GO:0009086||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_component chloroplast|GO:0009507|15024005|IDA  go_process methionine biosynthetic process|GO:0009086||ISS  go_function 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity|GO:0003871||ISS  go_function methionine synthase activity|GO:0008705|15024005|IDA  product ATMS3 (methionine synthase 3); 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase/ methionine synthase  note methionine synthase 3 (ATMS3); FUNCTIONS IN: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, methionine synthase activity; INVOLVED IN: methionine biosynthetic process, amino acid biosynthetic process; LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal (InterPro:IPR013215), Methionine synthase, vitamin-B12 independent (InterPro:IPR002629), 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (InterPro:IPR006276); BEST Arabidopsis thaliana protein match is: ATMS1; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase/ methionine synthase (TAIR:AT5G17920.2); Has 2812 Blast hits to 2806 proteins in 943 species: Archae - 113; Bacteria - 1773; Metazoa - 14; Fungi - 149; Plants - 157; Viruses - 2; Other Eukaryotes - 604 (source: NCBI BLink).  protein_id AT5G20980.2p  transcript_id AT5G20980.2  protein_id AT5G20980.2p  transcript_id AT5G20980.2  
At5g20990	chr5:007133200	0.0	C/7133200-7133397,7132992-7133118,7132666-7132796,7132057-7132158,7131890-7131973,7131547-7131774,7131157-7131347,7130956-7131060,7130536-7130829,7129549-7129706,7129359-7129465,7129048-7129104,7128737-7128967	AT5G20990.1  CDS  gene_syn B73, CHL6, CHLORATE RESISTANT 6, CNX, CNX1, CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 1, MOLYBDENUM COFACTOR BIOSYNTHESIS ENZYME CNX1, SIR4, SIRTINOL 4, T10F18.20, T10F18_20  gene B73  function Involved in molybdenum cofactor (Moco) biosynthesis, inserting Mo into Molybdopterin. sir loss-of-function mutants are resistant to sirtinol, a modulator of auxin signaling.  go_component cellular_component|GO:0005575||ND  go_process Mo-molybdopterin cofactor biosynthetic process|GO:0006777||IDA  go_process Mo-molybdopterin cofactor biosynthetic process|GO:0006777||IMP  go_process auxin mediated signaling pathway|GO:0009734|15710899|IMP  go_function molybdenum ion binding|GO:0030151|9341109|IDA  product B73; molybdenum ion binding  note B73; FUNCTIONS IN: molybdenum ion binding; INVOLVED IN: auxin mediated signaling pathway, Mo-molybdopterin cofactor biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molybdenum cofactor biosynthesis, conserved site (InterPro:IPR008284), MoeA, N-terminal, domain I and II (InterPro:IPR005110), Molybdopterin binding (InterPro:IPR001453), MoeA, C-terminal, domain IV (InterPro:IPR005111); Has 8617 Blast hits to 8321 proteins in 1085 species: Archae - 404; Bacteria - 4852; Metazoa - 324; Fungi - 119; Plants - 50; Viruses - 0; Other Eukaryotes - 2868 (source: NCBI BLink).  protein_id AT5G20990.1p  transcript_id AT5G20990.1  protein_id AT5G20990.1p  transcript_id AT5G20990.1  
At5g21005	chr5:007135434	0.0	C/7135434-7135676	AT5G21005.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G21005.1p  transcript_id AT5G21005.1  protein_id AT5G21005.1p  transcript_id AT5G21005.1  
At5g21010	chr5:007136062	0.0	W/7136062-7136462,7137327-7137672,7137757-7138045,7138178-7138374	AT5G21010.1  CDS  gene_syn ATBPM5, BTB-POZ and MATH domain 5, T10F18.30, T10F18_30  gene ATBPM5  go_function protein binding|GO:0005515||IEA  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ATBPM5 (BTB-POZ and MATH domain 5); protein binding  note BTB-POZ and MATH domain 5 (ATBPM5); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: ATBPM6 (BTB-POZ and MATH domain 6); protein binding (TAIR:AT3G43700.1); Has 5740 Blast hits to 5554 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 4466; Fungi - 135; Plants - 899; Viruses - 48; Other Eukaryotes - 192 (source: NCBI BLink).  protein_id AT5G21010.1p  transcript_id AT5G21010.1  protein_id AT5G21010.1p  transcript_id AT5G21010.1  
At5g21020	chr5:007139023	0.0	W/7139023-7139151	AT5G21020.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G21020.2p  transcript_id AT5G21020.2  protein_id AT5G21020.2p  transcript_id AT5G21020.2  
At5g21030	chr5:007144093	0.0	C/7144093-7144272,7143615-7144003,7143382-7143518,7143198-7143295,7143008-7143105,7142769-7142931,7142546-7142662,7142364-7142471,7142215-7142277,7142021-7142122,7141753-7141921,7141558-7141655,7141338-7141478,7141127-7141257,7140964-7141026,7140823-7140886,7140615-7140669,7140454-7140527,7140277-7140371,7140144-7140175,7139892-7140067	AT5G21030.1  CDS  gene_syn T10F18.3  go_function nucleic acid binding|GO:0003676||IEA  product PAZ domain-containing protein / piwi domain-containing protein  note PAZ domain-containing protein / piwi domain-containing protein; FUNCTIONS IN: nucleic acid binding; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Argonaute and Dicer protein, PAZ (InterPro:IPR003100), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: PAZ domain-containing protein / piwi domain-containing protein (TAIR:AT5G21150.1); Has 1376 Blast hits to 1349 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 835; Fungi - 170; Plants - 254; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT5G21030.1p  transcript_id AT5G21030.1  protein_id AT5G21030.1p  transcript_id AT5G21030.1  
At5g21040	chr5:007145058	0.0	C/7145058-7146677	AT5G21040.1  CDS  gene_syn F-BOX PROTEIN 2, FBX2, T10F18.1  gene FBX2  function Encodes an F-box containing protein that interacts physically with BHLH32 and appears to be involved in mediating phosphate starvation responses.  go_component SCF ubiquitin ligase complex|GO:0019005|18930958|ISS  go_process cellular response to phosphate starvation|GO:0016036|18930958|IMP  go_function molecular_function|GO:0003674||ND  product FBX2 (F-BOX PROTEIN 2)  note F-BOX PROTEIN 2 (FBX2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cellular response to phosphate starvation; LOCATED IN: SCF ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT2G43770.1); Has 17113 Blast hits to 10441 proteins in 435 species: Archae - 22; Bacteria - 2881; Metazoa - 6804; Fungi - 3732; Plants - 1425; Viruses - 0; Other Eukaryotes - 2249 (source: NCBI BLink).  protein_id AT5G21040.1p  transcript_id AT5G21040.1  protein_id AT5G21040.1p  transcript_id AT5G21040.1  
At5g21050	chr5:007147890	0.0	W/7147890-7148957	AT5G21050.1  CDS  gene_syn T10F18.80, T10F18_80  go_component chloroplast|GO:0009507||IEA  product unknown protein  note LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Hyccin (InterPro:IPR018619); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64090.1); Has 170 Blast hits to 170 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 133; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G21050.1p  transcript_id AT5G21050.1  protein_id AT5G21050.1p  transcript_id AT5G21050.1  
At5g21060	chr5:007152650	0.0	C/7152650-7152745,7152232-7152382,7152083-7152160,7151850-7151965,7151367-7151420,7151122-7151209,7150933-7151025,7150584-7150624,7150157-7150210,7149755-7149918,7149509-7149578,7149153-7149278	AT5G21060.1  CDS  gene_syn T10F18.90, T10F18_90  go_process metabolic process|GO:0008152||IEA  go_process amino acid biosynthetic process|GO:0008652||IEA  go_function catalytic activity|GO:0003824||IEA  go_function homoserine dehydrogenase activity|GO:0004412||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process amino acid biosynthetic process|GO:0008652||ISS  go_process aspartate family amino acid biosynthetic process|GO:0009067||ISS  go_function homoserine dehydrogenase activity|GO:0004412||ISS  product homoserine dehydrogenase family protein  note homoserine dehydrogenase family protein; FUNCTIONS IN: homoserine dehydrogenase activity, binding, catalytic activity; INVOLVED IN: amino acid biosynthetic process, aspartate family amino acid biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homoserine dehydrogenase, catalytic (InterPro:IPR001342), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I); aspartate kinase/ homoserine dehydrogenase (TAIR:AT1G31230.1); Has 4654 Blast hits to 4654 proteins in 1200 species: Archae - 114; Bacteria - 2694; Metazoa - 2; Fungi - 105; Plants - 81; Viruses - 0; Other Eukaryotes - 1658 (source: NCBI BLink).  protein_id AT5G21060.1p  transcript_id AT5G21060.1  protein_id AT5G21060.1p  transcript_id AT5G21060.1  
At5g21060	chr5:007152650	0.0	C/7152650-7152745,7152232-7152382,7152083-7152166,7151850-7151965,7151367-7151420,7151122-7151209,7150933-7151025,7150584-7150624,7150157-7150210,7149755-7149918,7149505-7149578,7149153-7149274	AT5G21060.3  CDS  gene_syn T10F18.90, T10F18_90  go_process metabolic process|GO:0008152||IEA  go_process amino acid biosynthetic process|GO:0008652||IEA  go_function catalytic activity|GO:0003824||IEA  go_function homoserine dehydrogenase activity|GO:0004412||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process amino acid biosynthetic process|GO:0008652||ISS  go_process aspartate family amino acid biosynthetic process|GO:0009067||ISS  go_function homoserine dehydrogenase activity|GO:0004412||ISS  product homoserine dehydrogenase family protein  note homoserine dehydrogenase family protein; FUNCTIONS IN: homoserine dehydrogenase activity, binding, catalytic activity; INVOLVED IN: amino acid biosynthetic process, aspartate family amino acid biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homoserine dehydrogenase, catalytic (InterPro:IPR001342), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: bifunctional aspartate kinase/homoserine dehydrogenase, putative / AK-HSDH, putative (TAIR:AT4G19710.2); Has 4655 Blast hits to 4655 proteins in 1200 species: Archae - 114; Bacteria - 2694; Metazoa - 2; Fungi - 105; Plants - 81; Viruses - 0; Other Eukaryotes - 1659 (source: NCBI BLink).  protein_id AT5G21060.3p  transcript_id AT5G21060.3  protein_id AT5G21060.3p  transcript_id AT5G21060.3  
At5g21060	chr5:007152650	0.0	C/7152650-7152745,7152232-7152382,7152083-7152166,7151850-7151965,7151367-7151420,7151122-7151209,7150933-7151025,7150584-7150624,7150157-7150210,7149755-7149918,7149509-7149578,7149153-7149278	AT5G21060.2  CDS  gene_syn T10F18.90, T10F18_90  go_process metabolic process|GO:0008152||IEA  go_process amino acid biosynthetic process|GO:0008652||IEA  go_function catalytic activity|GO:0003824||IEA  go_function homoserine dehydrogenase activity|GO:0004412||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process amino acid biosynthetic process|GO:0008652||ISS  go_process aspartate family amino acid biosynthetic process|GO:0009067||ISS  go_function homoserine dehydrogenase activity|GO:0004412||ISS  product homoserine dehydrogenase family protein  note homoserine dehydrogenase family protein; FUNCTIONS IN: homoserine dehydrogenase activity, binding, catalytic activity; INVOLVED IN: amino acid biosynthetic process, aspartate family amino acid biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homoserine dehydrogenase, catalytic (InterPro:IPR001342), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: bifunctional aspartate kinase/homoserine dehydrogenase, putative / AK-HSDH, putative (TAIR:AT4G19710.2); Has 4652 Blast hits to 4652 proteins in 1200 species: Archae - 114; Bacteria - 2694; Metazoa - 2; Fungi - 105; Plants - 81; Viruses - 0; Other Eukaryotes - 1656 (source: NCBI BLink).  protein_id AT5G21060.2p  transcript_id AT5G21060.2  protein_id AT5G21060.2p  transcript_id AT5G21060.2  
At5g21070	chr5:007156356	0.0	W/7156356-7156503,7156830-7157157,7157289-7157490	AT5G21070.1  CDS  gene_syn T10F18.100, T10F18_100  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 53 Blast hits to 53 proteins in 17 species: Archae - 0; Bacteria - 18; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT5G21070.1p  transcript_id AT5G21070.1  protein_id AT5G21070.1p  transcript_id AT5G21070.1  
At5g21080	chr5:007162772	0.0	C/7162772-7162906,7162344-7162418,7162143-7162258,7161945-7162059,7161725-7161853,7161591-7161638,7161323-7161498,7161042-7161238,7160668-7160960,7160424-7160573,7159867-7160325,7159642-7159788,7159476-7159545,7159226-7159353,7158929-7159135,7158705-7158842,7158494-7158622,7158035-7158400	AT5G21080.1  CDS  gene_syn T10F18.110, T10F18_110  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: cyclin-related (TAIR:AT2G41830.1); Has 203 Blast hits to 200 proteins in 66 species: Archae - 0; Bacteria - 4; Metazoa - 116; Fungi - 12; Plants - 64; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G21080.1p  transcript_id AT5G21080.1  protein_id AT5G21080.1p  transcript_id AT5G21080.1  
At5g21090	chr5:007164758	0.0	W/7164758-7164981,7165827-7165898,7166052-7166195,7166390-7166461,7166578-7166649,7166832-7166904	AT5G21090.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat protein, putative  note leucine-rich repeat protein, putative; FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT3G43740.1); Has 47057 Blast hits to 11994 proteins in 566 species: Archae - 32; Bacteria - 1491; Metazoa - 5345; Fungi - 325; Plants - 37241; Viruses - 0; Other Eukaryotes - 2623 (source: NCBI BLink).  protein_id AT5G21090.1p  transcript_id AT5G21090.1  protein_id AT5G21090.1p  transcript_id AT5G21090.1  
At5g21100	chr5:007168312	0.0	W/7168312-7168569,7169093-7169185,7169275-7169676,7169751-7170719	AT5G21100.1  CDS  gene_syn T10F18.130, T10F18_130  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process oxidation reduction|GO:0055114||IEA  go_function copper ion binding|GO:0005507||IEA  go_function L-ascorbate oxidase activity|GO:0008447||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product L-ascorbate oxidase, putative  note L-ascorbate oxidase, putative; FUNCTIONS IN: oxidoreductase activity, copper ion binding, L-ascorbate oxidase activity; INVOLVED IN: oxidation reduction; LOCATED IN: plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117), L-ascorbate oxidase, plants (InterPro:IPR017760); BEST Arabidopsis thaliana protein match is: L-ascorbate oxidase/ copper ion binding / oxidoreductase (TAIR:AT5G21105.1); Has 6768 Blast hits to 6126 proteins in 1004 species: Archae - 32; Bacteria - 2559; Metazoa - 528; Fungi - 2477; Plants - 797; Viruses - 0; Other Eukaryotes - 375 (source: NCBI BLink).  protein_id AT5G21100.1p  transcript_id AT5G21100.1  protein_id AT5G21100.1p  transcript_id AT5G21100.1  
At5g21105	chr5:007172727	0.0	W/7172727-7173026,7173562-7173654,7173737-7173949,7174354-7174551,7176447-7177409	AT5G21105.1  CDS  go_component cell wall|GO:0005618|14595688|IDA  go_process oxidation reduction|GO:0055114||IEA  go_function copper ion binding|GO:0005507||IEA  go_function L-ascorbate oxidase activity|GO:0008447||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function copper ion binding|GO:0005507||ISS  go_function L-ascorbate oxidase activity|GO:0008447||ISS  product L-ascorbate oxidase/ copper ion binding / oxidoreductase  note L-ascorbate oxidase/ copper ion binding / oxidoreductase; FUNCTIONS IN: oxidoreductase activity, L-ascorbate oxidase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 3 (InterPro:IPR011707), Multicopper oxidase, copper-binding site (InterPro:IPR002355), L-ascorbate oxidase, plants (InterPro:IPR017760), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: L-ascorbate oxidase, putative (TAIR:AT5G21100.1); Has 6896 Blast hits to 6267 proteins in 1013 species: Archae - 39; Bacteria - 2676; Metazoa - 535; Fungi - 2466; Plants - 798; Viruses - 0; Other Eukaryotes - 382 (source: NCBI BLink).  protein_id AT5G21105.1p  transcript_id AT5G21105.1  protein_id AT5G21105.1p  transcript_id AT5G21105.1  
At5g21105	chr5:007174321	0.0	W/7174321-7174551,7176447-7177409	AT5G21105.2  CDS  go_process oxidation reduction|GO:0055114||IEA  go_function copper ion binding|GO:0005507||IEA  go_function L-ascorbate oxidase activity|GO:0008447||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function copper ion binding|GO:0005507||ISS  go_function L-ascorbate oxidase activity|GO:0008447||ISS  product L-ascorbate oxidase/ copper ion binding / oxidoreductase  note L-ascorbate oxidase/ copper ion binding / oxidoreductase; FUNCTIONS IN: oxidoreductase activity, copper ion binding, L-ascorbate oxidase activity; INVOLVED IN: oxidation reduction; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), L-ascorbate oxidase, plants (InterPro:IPR017760), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: L-ascorbate oxidase, putative (TAIR:AT5G21100.1).  protein_id AT5G21105.2p  transcript_id AT5G21105.2  protein_id AT5G21105.2p  transcript_id AT5G21105.2  
At5g21110	chr5:007178615	0.0	W/7178615-7178700,7178894-7179086	AT5G21110.1  CDS  gene_syn T10F18.140, T10F18_140  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G21110.1p  transcript_id AT5G21110.1  protein_id AT5G21110.1p  transcript_id AT5G21110.1  
At5g21120	chr5:007182629	0.0	W/7182629-7184185	AT5G21120.1  CDS  gene_syn EIL2, ETHYLENE-INSENSITIVE3-LIKE 2, T10F18.150, T10F18_150  gene EIL2  function ethylene-insensitive3-like2 (EIL2)  go_component nucleus|GO:0005634||IEA  go_process ethylene mediated signaling pathway|GO:0009873||NAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product EIL2 (ETHYLENE-INSENSITIVE3-LIKE 2); transcription factor  note ETHYLENE-INSENSITIVE3-LIKE 2 (EIL2); FUNCTIONS IN: transcription factor activity; INVOLVED IN: ethylene mediated signaling pathway; LOCATED IN: nucleus; EXPRESSED IN: shoot apex, sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ethylene insensitive 3 (InterPro:IPR006957); BEST Arabidopsis thaliana protein match is: EIN3 (ETHYLENE-INSENSITIVE3); transcription factor (TAIR:AT3G20770.1); Has 226 Blast hits to 226 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 226; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G21120.1p  transcript_id AT5G21120.1  protein_id AT5G21120.1p  transcript_id AT5G21120.1  
At5g21125	chr5:007185048	0.0	C/7185048-7185428	AT5G21125.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G21125.1p  transcript_id AT5G21125.1  protein_id AT5G21125.1p  transcript_id AT5G21125.1  
At5g21130	chr5:007185968	0.0	W/7185968-7186813	AT5G21130.1  CDS  gene_syn T10F18.160, T10F18_160  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: harpin-induced protein-related / HIN1-related / harpin-responsive protein-related (TAIR:AT2G27080.2); Has 592 Blast hits to 591 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 592; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G21130.1p  transcript_id AT5G21130.1  protein_id AT5G21130.1p  transcript_id AT5G21130.1  
At5g21140	chr5:007189407	0.0	C/7189407-7189521,7188923-7189119,7188605-7188685,7187947-7188174,7187756-7187830,7187416-7187658	AT5G21140.1  CDS  gene_syn emb1379, embryo defective 1379  gene emb1379  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product emb1379 (embryo defective 1379)  note embryo defective 1379 (emb1379); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Nse1 non-SMC component of SMC5-6 complex (InterPro:IPR011513), Zinc finger, RING-like (InterPro:IPR014857); Has 167 Blast hits to 166 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 77; Fungi - 62; Plants - 23; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G21140.1p  transcript_id AT5G21140.1  protein_id AT5G21140.1p  transcript_id AT5G21140.1  
At5g21150	chr5:007193472	0.0	W/7193472-7193687,7193791-7193996,7194099-7194305,7194389-7194525,7194615-7194712,7194778-7194875,7194950-7195109,7195197-7195313,7195400-7195507,7195602-7195664,7195740-7195853,7195948-7196116,7196209-7196321,7196429-7196566,7196672-7196799,7196933-7196998,7197078-7197141,7197255-7197366,7197452-7197525,7197618-7197712,7197815-7197846,7197938-7198113	AT5G21150.1  CDS  gene_syn T10F18.180, T10F18_180  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  product PAZ domain-containing protein / piwi domain-containing protein  note PAZ domain-containing protein / piwi domain-containing protein; FUNCTIONS IN: nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Argonaute and Dicer protein, PAZ (InterPro:IPR003100); BEST Arabidopsis thaliana protein match is: AGO4 (ARGONAUTE 4); nucleic acid binding (TAIR:AT2G27040.1); Has 1394 Blast hits to 1371 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 847; Fungi - 172; Plants - 251; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).  protein_id AT5G21150.1p  transcript_id AT5G21150.1  protein_id AT5G21150.1p  transcript_id AT5G21150.1  
At5g21160	chr5:007203628	0.0	C/7203628-7203879,7202832-7203291,7202512-7202671,7202307-7202397,7202121-7202192,7201584-7201766,7201307-7201482,7201095-7201164,7200906-7201010,7200524-7200831,7200285-7200428,7200126-7200189,7199791-7199936,7199575-7199679,7199191-7199335	AT5G21160.1  CDS  gene_syn T10F18.190, T10F18_190  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product La domain-containing protein / proline-rich family protein  note La domain-containing protein / proline-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Protein of unknown function DM15 (InterPro:IPR006607); BEST Arabidopsis thaliana protein match is: La domain-containing protein (TAIR:AT4G35890.1); Has 34543 Blast hits to 19975 proteins in 870 species: Archae - 32; Bacteria - 3816; Metazoa - 18229; Fungi - 4234; Plants - 3998; Viruses - 856; Other Eukaryotes - 3378 (source: NCBI BLink).  protein_id AT5G21160.1p  transcript_id AT5G21160.1  protein_id AT5G21160.1p  transcript_id AT5G21160.1  
At5g21170	chr5:007205718	0.0	W/7205718-7205915,7207224-7207334,7207423-7207598,7207680-7207842,7207925-7208239	AT5G21170.2  CDS  gene_syn T10F18.200, T10F18_200  go_component chloroplast|GO:0009507||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function AMP-activated protein kinase activity|GO:0004679||ISS  product 5 -AMP-activated protein kinase beta-2 subunit, putative  note 5 -AMP-activated protein kinase beta-2 subunit, putative; FUNCTIONS IN: AMP-activated protein kinase activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 5-AMP-activated protein kinase, beta subunit, complex-interacting region (InterPro:IPR006828); BEST Arabidopsis thaliana protein match is: AMP-activated protein kinase (TAIR:AT4G16360.1); Has 488 Blast hits to 479 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 213; Fungi - 110; Plants - 109; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT5G21170.2p  transcript_id AT5G21170.2  protein_id AT5G21170.2p  transcript_id AT5G21170.2  
At5g21170	chr5:007205718	0.0	W/7205718-7205915,7207423-7207598,7207680-7207842,7207925-7208239	AT5G21170.1  CDS  gene_syn T10F18.200, T10F18_200  go_component chloroplast|GO:0009507||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function AMP-activated protein kinase activity|GO:0004679||ISS  product 5 -AMP-activated protein kinase beta-2 subunit, putative  note 5 -AMP-activated protein kinase beta-2 subunit, putative; FUNCTIONS IN: AMP-activated protein kinase activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 5-AMP-activated protein kinase, beta subunit, complex-interacting region (InterPro:IPR006828); BEST Arabidopsis thaliana protein match is: AMP-activated protein kinase (TAIR:AT4G16360.1); Has 501 Blast hits to 492 proteins in 136 species: Archae - 0; Bacteria - 1; Metazoa - 215; Fungi - 119; Plants - 111; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT5G21170.1p  transcript_id AT5G21170.1  protein_id AT5G21170.1p  transcript_id AT5G21170.1  
At5g21222	chr5:007209422	0.0	W/7209422-7209592,7209765-7209827,7209962-7210033,7210205-7210312,7210421-7210501,7210698-7210751,7210829-7210954,7211039-7211128,7211704-7211826,7212007-7212879,7212966-7213700	AT5G21222.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function protein kinase activity|GO:0004672||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Pentatricopeptide repeat (InterPro:IPR002885), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G25630.1); Has 114429 Blast hits to 95597 proteins in 2212 species: Archae - 72; Bacteria - 8552; Metazoa - 38934; Fungi - 9044; Plants - 38583; Viruses - 478; Other Eukaryotes - 18766 (source: NCBI BLink).  protein_id AT5G21222.1p  transcript_id AT5G21222.1  protein_id AT5G21222.1p  transcript_id AT5G21222.1  
At5g21274	chr5:007215875	0.0	C/7215875-7215950,7214740-7215113	AT5G21274.1  CDS  gene_syn ACAM-6, CALMODULIN 6, CAM6  gene CAM6  function Encodes a calmodulin isoform. Expressed in leaves.  go_component cellular_component|GO:0005575||ND  go_process calcium-mediated signaling|GO:0019722|8507825|TAS  go_function calcium ion binding|GO:0005509|8507825|ISS  go_function calcium ion binding|GO:0005509||ISS  product CAM6 (CALMODULIN 6); calcium ion binding  note CALMODULIN 6 (CAM6); FUNCTIONS IN: calcium ion binding; INVOLVED IN: calcium-mediated signaling; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell, leaf; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: CAM7 (CALMODULIN 7); calcium ion binding (TAIR:AT3G43810.1); Has 26893 Blast hits to 18279 proteins in 1447 species: Archae - 0; Bacteria - 129; Metazoa - 12479; Fungi - 5962; Plants - 4210; Viruses - 0; Other Eukaryotes - 4113 (source: NCBI BLink).  protein_id AT5G21274.1p  transcript_id AT5G21274.1  protein_id AT5G21274.1p  transcript_id AT5G21274.1  
At5g21326	chr5:007218081	0.0	W/7218081-7218251,7218338-7218400,7218519-7218590,7218786-7218893,7218977-7219057,7219260-7219313,7219400-7219525,7219615-7219704,7220517-7220639,7220746-7220856,7220963-7221076,7221354-7221410,7221513-7221587,7221669-7221743	AT5G21326.1  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process signal transduction|GO:0007165||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function ATP binding|GO:0005524||ISS  product protein kinase family protein / NAF domain-containing protein  note protein kinase family protein / NAF domain-containing protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: signal transduction, protein amino acid phosphorylation; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CIPK3 (CBL-INTERACTING PROTEIN KINASE 3); kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT2G26980.4); Has 94147 Blast hits to 92534 proteins in 2889 species: Archae - 67; Bacteria - 8592; Metazoa - 40110; Fungi - 8761; Plants - 17971; Viruses - 476; Other Eukaryotes - 18170 (source: NCBI BLink).  protein_id AT5G21326.1p  transcript_id AT5G21326.1  protein_id AT5G21326.1p  transcript_id AT5G21326.1  
At5g21378	chr5:007222057	0.0	C/7222057-7222128	AT5G21378.1  tRNA  gene_syn 68398.TRNA-ASP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asp (anticodon: GTC)  transcript_id AT5G21378.1  
At5g21430	chr5:007222294	0.0	W/7222294-7222561,7222681-7222742,7222861-7222950,7223064-7223204,7223305-7223400	AT5G21430.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_function heat shock protein binding|GO:0031072||IEA  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; LOCATED IN: chloroplast thylakoid membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); Has 46 Blast hits to 46 proteins in 21 species: Archae - 0; Bacteria - 14; Metazoa - 2; Fungi - 4; Plants - 16; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G21430.1p  transcript_id AT5G21430.1  protein_id AT5G21430.1p  transcript_id AT5G21430.1  
At5g21430	chr5:007222294	0.0	W/7222294-7222561,7222681-7222742,7222861-7222950,7223067-7223204,7223305-7223400	AT5G21430.2  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_function heat shock protein binding|GO:0031072||IEA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; LOCATED IN: chloroplast thylakoid membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); Has 19 Blast hits to 19 proteins in 9 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G21430.2p  transcript_id AT5G21430.2  protein_id AT5G21430.2p  transcript_id AT5G21430.2  
At5g21482	chr5:007226842	0.0	W/7226842-7227564,7227681-7227956,7228738-7229000,7229740-7230052	AT5G21482.1  CDS  gene_syn ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, ATCKX5, CKX7, CYTOKININ OXIDASE 7  gene CKX7  function This gene used to be called AtCKX5. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.  go_component cellular_component|GO:0005575||ND  go_process cytokinin catabolic process|GO:0009823|12721786|TAS  go_function oxidoreductase activity|GO:0016491||ISS  go_function cytokinin dehydrogenase activity|GO:0019139|14555694|TAS  product CKX7 (CYTOKININ OXIDASE 7); cytokinin dehydrogenase/ oxidoreductase  note CYTOKININ OXIDASE 7 (CKX7); FUNCTIONS IN: cytokinin dehydrogenase activity, oxidoreductase activity; INVOLVED IN: cytokinin catabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytokinin dehydrogenase 1, FAD and cytokinin binding (InterPro:IPR015345), FAD-binding, type 2 (InterPro:IPR016166), Oxygen oxidoreductase covalent FAD-binding site (InterPro:IPR006093), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: CKX5 (CYTOKININ OXIDASE 5); cytokinin dehydrogenase (TAIR:AT1G75450.1); Has 4957 Blast hits to 4954 proteins in 888 species: Archae - 93; Bacteria - 2873; Metazoa - 116; Fungi - 993; Plants - 310; Viruses - 0; Other Eukaryotes - 572 (source: NCBI BLink).  protein_id AT5G21482.1p  transcript_id AT5G21482.1  protein_id AT5G21482.1p  transcript_id AT5G21482.1  
At5g21535	chr5:007236283	0.0	C/7236283-7236651	AT5G21535.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g21900	chr5:007238239	0.0	W/7238239-7238919,7238998-7239434,7239532-7239693,7239783-7239858,7239939-7240094,7240216-7240338	AT5G21900.1  CDS  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G06040.1); Has 3199 Blast hits to 1589 proteins in 145 species: Archae - 0; Bacteria - 78; Metazoa - 1884; Fungi - 400; Plants - 626; Viruses - 0; Other Eukaryotes - 211 (source: NCBI BLink).  protein_id AT5G21900.1p  transcript_id AT5G21900.1  protein_id AT5G21900.1p  transcript_id AT5G21900.1  
At5g21910	chr5:007240816	0.0	W/7240816-7241127	AT5G21910.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G21910.1p  transcript_id AT5G21910.1  protein_id AT5G21910.1p  transcript_id AT5G21910.1  
At5g21920	chr5:007242460	0.0	C/7242460-7242765,7241880-7242082,7241350-7241596	AT5G21920.1  CDS  go_component chloroplast|GO:0009507||IEA  go_component membrane|GO:0016020||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product YGGT family protein  note YGGT family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function YGGT (InterPro:IPR003425); BEST Arabidopsis thaliana protein match is: YGGT family protein (TAIR:AT4G27990.1); Has 1060 Blast hits to 1060 proteins in 353 species: Archae - 0; Bacteria - 642; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 348 (source: NCBI BLink).  protein_id AT5G21920.1p  transcript_id AT5G21920.1  protein_id AT5G21920.1p  transcript_id AT5G21920.1  
At5g21930	chr5:007243129	0.0	W/7243129-7243750,7243849-7243926,7244299-7244396,7244483-7244536,7244657-7244743,7244832-7244996,7245365-7245475,7245617-7245685,7245977-7246086,7246263-7246368,7246570-7246636,7247051-7247130,7247282-7247911,7248086-7248217,7248349-7248499,7248630-7248721	AT5G21930.1  CDS  gene_syn HMA8, P-TYPE ATPASE OF ARABIDOPSIS 2, PAA2  gene PAA2  function P-Type ATPase, mediates copper transport to chloroplast thylakoid lumen. Required for accumulation of copper-containing plastocyanin in the thylakoid lumen and for effective photosynthetic electron transport  go_component chloroplast thylakoid membrane|GO:0009535|15772282|IDA  go_process copper ion transport|GO:0006825|15772282|IMP  go_process photosynthetic electron transport chain|GO:0009767|15772282|IMP  go_function copper ion transmembrane transporter activity|GO:0005375|15772282|IMP  go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662||ISS  product PAA2 (P-TYPE ATPASE OF ARABIDOPSIS 2); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism / copper ion transmembrane transporter  note P-TYPE ATPASE OF ARABIDOPSIS 2 (PAA2); FUNCTIONS IN: copper ion transmembrane transporter activity, ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: photosynthetic electron transport chain, copper ion transport; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: shoot; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121), ATPase, P type, cation/copper-transporter (InterPro:IPR006403), ATPase, P-type, ATPase-associated region (InterPro:IPR008250), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type, heavy metal translocating (InterPro:IPR006416), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: PAA1 (P-TYPE ATP-ASE 1); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism / copper ion transmembrane transporter (TAIR:AT4G33520.2); Has 21397 Blast hits to 18186 proteins in 1835 species: Archae - 480; Bacteria - 11907; Metazoa - 3231; Fungi - 1666; Plants - 1012; Viruses - 5; Other Eukaryotes - 3096 (source: NCBI BLink).  protein_id AT5G21930.1p  transcript_id AT5G21930.1  protein_id AT5G21930.1p  transcript_id AT5G21930.1  
At5g21930	chr5:007243129	0.0	W/7243129-7243750,7243849-7243926,7244299-7244396,7244483-7244536,7244657-7244743,7244832-7244996,7245365-7245475,7245617-7245685,7245977-7246086,7246263-7246368,7246570-7246636,7247051-7247130,7247282-7247911,7248086-7248217,7248349-7248499,7248630-7248721	AT5G21930.2  CDS  gene_syn HMA8, P-TYPE ATPASE OF ARABIDOPSIS 2, PAA2  gene PAA2  function P-Type ATPase, mediates copper transport to chloroplast thylakoid lumen. Required for accumulation of copper-containing plastocyanin in the thylakoid lumen and for effective photosynthetic electron transport  go_component chloroplast thylakoid membrane|GO:0009535|15772282|IDA  go_process copper ion transport|GO:0006825|15772282|IMP  go_process photosynthetic electron transport chain|GO:0009767|15772282|IMP  go_function copper ion transmembrane transporter activity|GO:0005375|15772282|IMP  go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662||ISS  product PAA2 (P-TYPE ATPASE OF ARABIDOPSIS 2); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism / copper ion transmembrane transporter  note P-TYPE ATPASE OF ARABIDOPSIS 2 (PAA2); FUNCTIONS IN: copper ion transmembrane transporter activity, ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: photosynthetic electron transport chain, copper ion transport; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: shoot; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Heavy metal transport/detoxification protein (InterPro:IPR006121), ATPase, P type, cation/copper-transporter (InterPro:IPR006403), ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, heavy metal translocating (InterPro:IPR006416), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: PAA1 (P-TYPE ATP-ASE 1); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism / copper ion transmembrane transporter (TAIR:AT4G33520.2); Has 21397 Blast hits to 18186 proteins in 1835 species: Archae - 480; Bacteria - 11907; Metazoa - 3231; Fungi - 1666; Plants - 1012; Viruses - 5; Other Eukaryotes - 3096 (source: NCBI BLink).  protein_id AT5G21930.2p  transcript_id AT5G21930.2  protein_id AT5G21930.2p  transcript_id AT5G21930.2  
At5g21940	chr5:007250091	0.0	C/7250091-7250353,7249446-7249977	AT5G21940.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43850.1); Has 1753 Blast hits to 377 proteins in 78 species: Archae - 0; Bacteria - 12; Metazoa - 369; Fungi - 63; Plants - 133; Viruses - 0; Other Eukaryotes - 1176 (source: NCBI BLink).  protein_id AT5G21940.1p  transcript_id AT5G21940.1  protein_id AT5G21940.1p  transcript_id AT5G21940.1  
At5g21950	chr5:007255231	0.0	C/7255231-7255866,7254601-7254672,7254355-7254422,7254067-7254193	AT5G21950.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT4G33180.1); Has 5974 Blast hits to 5970 proteins in 940 species: Archae - 33; Bacteria - 3836; Metazoa - 366; Fungi - 69; Plants - 266; Viruses - 0; Other Eukaryotes - 1404 (source: NCBI BLink).  protein_id AT5G21950.1p  transcript_id AT5G21950.1  protein_id AT5G21950.1p  transcript_id AT5G21950.1  
At5g21960	chr5:007258560	0.0	C/7258560-7259210	AT5G21960.1  CDS  function encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.  go_component nucleus|GO:0005634|14617066|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_function transcription factor activity|GO:0003700||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT1G19210.1); Has 3418 Blast hits to 3410 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3414; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G21960.1p  transcript_id AT5G21960.1  protein_id AT5G21960.1p  transcript_id AT5G21960.1  
At5g21970	chr5:007262071	0.0	W/7262071-7263420	AT5G21970.1  CDS  go_component intracellular|GO:0005622||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  product ubiquitin thiolesterase  note ubiquitin thiolesterase; FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (InterPro:IPR001578); BEST Arabidopsis thaliana protein match is: ubiquitin thiolesterase (TAIR:AT4G01037.1); Has 213 Blast hits to 213 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 213; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G21970.1p  transcript_id AT5G21970.1  protein_id AT5G21970.1p  transcript_id AT5G21970.1  
At5g21280	chr5:007264658	0.0	C/7264658-7265514,7264094-7264145	AT5G21280.1  CDS  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; Has 6155 Blast hits to 3771 proteins in 331 species: Archae - 6; Bacteria - 473; Metazoa - 2380; Fungi - 745; Plants - 1401; Viruses - 261; Other Eukaryotes - 889 (source: NCBI BLink).  protein_id AT5G21280.1p  transcript_id AT5G21280.1  protein_id AT5G21280.1p  transcript_id AT5G21280.1  
At5g21990	chr5:007273395	0.0	W/7273395-7273490,7273603-7273833,7273970-7274026,7274141-7274269,7274456-7274533,7274655-7274725,7274848-7274897,7275038-7275185,7275343-7275856,7275947-7276090,7276172-7276318	AT5G21990.1  CDS  go_process protein folding|GO:0006457||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  product tetratricopeptide repeat (TPR)-containing protein  note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026), Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative (TAIR:AT5G48570.1); Has 2799 Blast hits to 2611 proteins in 224 species: Archae - 12; Bacteria - 49; Metazoa - 1583; Fungi - 260; Plants - 352; Viruses - 0; Other Eukaryotes - 543 (source: NCBI BLink).  protein_id AT5G21990.1p  transcript_id AT5G21990.1  protein_id AT5G21990.1p  transcript_id AT5G21990.1  
At5g22000	chr5:007277436	0.0	W/7277436-7277441,7277669-7277803,7277887-7277933,7278250-7278312,7278415-7278523,7278616-7278965,7279058-7279162,7279241-7279553	AT5G22000.1  CDS  gene_syn RHF2A, RING-H2 FINGER PROTEIN RHF2A, RING-H2 GROUP F2A  gene RHF2A  function encodes a RING-type E3 ubiquitin ligase implicated in gametogenesis. Double mutant analyses with RHF1a suggests that RHF2a may be involved in targetting ICK4KRP6 for degradation following meiosis in order to allow the mitoses associated with megagametogenesis and microgametogenesis to occur. RHF2a is expressed in all four floral whorls and is present at ~8-fold higher levels than RHF1a in inflorescences by RT-PCR analyses.  go_component plasma membrane|GO:0005886|17317660|IDA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process megagametogenesis|GO:0009561|18552199|IGI  go_process proteolysis involved in cellular protein catabolic process|GO:0051603|18552199|IGI  go_process regulation of cell cycle|GO:0051726|18552199|IGI  go_process microgametogenesis|GO:0055046|18552199|IGI  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product RHF2A (RING-H2 GROUP F2A); protein binding / zinc ion binding  note RING-H2 GROUP F2A (RHF2A); FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: regulation of cell cycle, proteolysis involved in cellular protein catabolic process, megagametogenesis, microgametogenesis; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: RHF1A (RING-H2 GROUP F1A); protein binding / ubiquitin-protein ligase/ zinc ion binding (TAIR:AT4G14220.1); Has 6401 Blast hits to 4230 proteins in 234 species: Archae - 0; Bacteria - 95; Metazoa - 1680; Fungi - 308; Plants - 1437; Viruses - 41; Other Eukaryotes - 2840 (source: NCBI BLink).  protein_id AT5G22000.1p  transcript_id AT5G22000.1  protein_id AT5G22000.1p  transcript_id AT5G22000.1  
At5g22000	chr5:007277436	0.0	W/7277436-7277441,7277669-7277803,7277887-7277933,7278250-7278312,7278415-7278523,7278616-7278965,7279058-7279162,7279241-7279553	AT5G22000.3  CDS  gene_syn RHF2A, RING-H2 FINGER PROTEIN RHF2A, RING-H2 GROUP F2A  gene RHF2A  function encodes a RING-type E3 ubiquitin ligase implicated in gametogenesis. Double mutant analyses with RHF1a suggests that RHF2a may be involved in targetting ICK4KRP6 for degradation following meiosis in order to allow the mitoses associated with megagametogenesis and microgametogenesis to occur. RHF2a is expressed in all four floral whorls and is present at ~8-fold higher levels than RHF1a in inflorescences by RT-PCR analyses.  go_component plasma membrane|GO:0005886|17317660|IDA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process megagametogenesis|GO:0009561|18552199|IGI  go_process proteolysis involved in cellular protein catabolic process|GO:0051603|18552199|IGI  go_process regulation of cell cycle|GO:0051726|18552199|IGI  go_process microgametogenesis|GO:0055046|18552199|IGI  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product RHF2A (RING-H2 GROUP F2A); protein binding / zinc ion binding  note RING-H2 GROUP F2A (RHF2A); FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: regulation of cell cycle, proteolysis involved in cellular protein catabolic process, megagametogenesis, microgametogenesis; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: RHF1A (RING-H2 GROUP F1A); protein binding / ubiquitin-protein ligase/ zinc ion binding (TAIR:AT4G14220.1); Has 6401 Blast hits to 4230 proteins in 234 species: Archae - 0; Bacteria - 95; Metazoa - 1680; Fungi - 308; Plants - 1437; Viruses - 41; Other Eukaryotes - 2840 (source: NCBI BLink).  protein_id AT5G22000.3p  transcript_id AT5G22000.3  protein_id AT5G22000.3p  transcript_id AT5G22000.3  
At5g22000	chr5:007277436	0.0	W/7277436-7277453,7277681-7277803,7277887-7277933,7278250-7278312,7278415-7278523,7278616-7278965,7279058-7279162,7279241-7279553	AT5G22000.2  CDS  gene_syn RHF2A, RING-H2 FINGER PROTEIN RHF2A, RING-H2 GROUP F2A  gene RHF2A  function encodes a RING-type E3 ubiquitin ligase implicated in gametogenesis. Double mutant analyses with RHF1a suggests that RHF2a may be involved in targetting ICK4KRP6 for degradation following meiosis in order to allow the mitoses associated with megagametogenesis and microgametogenesis to occur. RHF2a is expressed in all four floral whorls and is present at ~8-fold higher levels than RHF1a in inflorescences by RT-PCR analyses.  go_component plasma membrane|GO:0005886|17317660|IDA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process megagametogenesis|GO:0009561|18552199|IGI  go_process proteolysis involved in cellular protein catabolic process|GO:0051603|18552199|IGI  go_process regulation of cell cycle|GO:0051726|18552199|IGI  go_process microgametogenesis|GO:0055046|18552199|IGI  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product RHF2A (RING-H2 GROUP F2A); protein binding / zinc ion binding  note RING-H2 GROUP F2A (RHF2A); FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: regulation of cell cycle, proteolysis involved in cellular protein catabolic process, megagametogenesis, microgametogenesis; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: RHF1A (RING-H2 GROUP F1A); protein binding / ubiquitin-protein ligase/ zinc ion binding (TAIR:AT4G14220.1); Has 6434 Blast hits to 4263 proteins in 234 species: Archae - 0; Bacteria - 95; Metazoa - 1712; Fungi - 312; Plants - 1432; Viruses - 41; Other Eukaryotes - 2842 (source: NCBI BLink).  protein_id AT5G22000.2p  transcript_id AT5G22000.2  protein_id AT5G22000.2p  transcript_id AT5G22000.2  
At5g22010	chr5:007287035	0.0	C/7287035-7287037,7286760-7286885,7285998-7286459,7285841-7285908,7285683-7285758,7285542-7285603,7285308-7285453,7285000-7285136,7284732-7284920,7284522-7284643,7284212-7284419,7284032-7284085,7283417-7283586,7283149-7283239,7282808-7282977,7282448-7282487,7282035-7282159,7281730-7281802,7281524-7281616,7281186-7281435,7280954-7281010,7280632-7280780	AT5G22010.1  CDS  gene_syn AtRFC1, replication factor C 1  gene AtRFC1  go_component intracellular|GO:0005622||IEA  go_component DNA replication factor C complex|GO:0005663||IEA  go_process DNA replication|GO:0006260||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA clamp loader activity|GO:0003689||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATP binding|GO:0005524||ISS  product AtRFC1 (replication factor C 1); ATP binding / DNA binding / DNA clamp loader/ nucleoside-triphosphatase/ nucleotide binding  note replication factor C 1 (AtRFC1); FUNCTIONS IN: DNA clamp loader activity, nucleoside-triphosphatase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: DNA replication; LOCATED IN: DNA replication factor C complex, intracellular; CONTAINS InterPro DOMAIN/s: DNA replication factor RFC1, C-terminal (InterPro:IPR013725), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III clamp loader subunit, C-terminal (InterPro:IPR008921), DNA replication factor C, large subunit (InterPro:IPR012178), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: replication factor C 40 kDa, putative (TAIR:AT1G63160.1); Has 9891 Blast hits to 9813 proteins in 1571 species: Archae - 380; Bacteria - 3965; Metazoa - 996; Fungi - 748; Plants - 234; Viruses - 52; Other Eukaryotes - 3516 (source: NCBI BLink).  protein_id AT5G22010.1p  transcript_id AT5G22010.1  protein_id AT5G22010.1p  transcript_id AT5G22010.1  
At5g22020	chr5:007288738	0.0	C/7288738-7289357,7288479-7288646,7287878-7288277	AT5G22020.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function strictosidine synthase activity|GO:0016844||IEA  go_process alkaloid biosynthetic process|GO:0009821||ISS  go_function strictosidine synthase activity|GO:0016844||ISS  product strictosidine synthase family protein  note strictosidine synthase family protein; FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: alkaloid biosynthetic process, biosynthetic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Strictosidine synthase, conserved region (InterPro:IPR018119), Strictosidine synthase (InterPro:IPR004141), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: strictosidine synthase family protein (TAIR:AT1G08470.1); Has 884 Blast hits to 874 proteins in 191 species: Archae - 1; Bacteria - 251; Metazoa - 199; Fungi - 12; Plants - 300; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).  protein_id AT5G22020.1p  transcript_id AT5G22020.1  protein_id AT5G22020.1p  transcript_id AT5G22020.1  
At5g22030	chr5:007296250	0.0	C/7296250-7296344,7295346-7295597,7295133-7295222,7294688-7294811,7294549-7294602,7294077-7294136,7293857-7293949,7293370-7293699,7293122-7293262,7292816-7292986,7292080-7292337,7291813-7291961,7290955-7291491,7290475-7290748,7290155-7290268	AT5G22030.1  CDS  gene_syn UBIQUITIN-SPECIFIC PROTEASE 8, UBP8  gene UBP8  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_function ubiquitin-specific protease activity|GO:0004843||ISS  product UBP8 (UBIQUITIN-SPECIFIC PROTEASE 8); ubiquitin thiolesterase/ ubiquitin-specific protease  note UBIQUITIN-SPECIFIC PROTEASE 8 (UBP8); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: UBP5 (UBIQUITIN-SPECIFIC PROTEASE 5); ubiquitin-specific protease (TAIR:AT2G40930.1); Has 8356 Blast hits to 5724 proteins in 193 species: Archae - 0; Bacteria - 4; Metazoa - 4841; Fungi - 1173; Plants - 674; Viruses - 8; Other Eukaryotes - 1656 (source: NCBI BLink).  protein_id AT5G22030.1p  transcript_id AT5G22030.1  protein_id AT5G22030.1p  transcript_id AT5G22030.1  
At5g22030	chr5:007296250	0.0	C/7296250-7296344,7295346-7295597,7295133-7295222,7294688-7294811,7294549-7294602,7294077-7294136,7293857-7293949,7293370-7293699,7293122-7293262,7292816-7292986,7292080-7292337,7291813-7291961,7290955-7291491,7290475-7290748,7290155-7290268	AT5G22030.2  CDS  gene_syn UBIQUITIN-SPECIFIC PROTEASE 8, UBP8  gene UBP8  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_function ubiquitin-specific protease activity|GO:0004843||ISS  product UBP8 (UBIQUITIN-SPECIFIC PROTEASE 8); ubiquitin thiolesterase/ ubiquitin-specific protease  note UBIQUITIN-SPECIFIC PROTEASE 8 (UBP8); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: UBP5 (UBIQUITIN-SPECIFIC PROTEASE 5); ubiquitin-specific protease (TAIR:AT2G40930.1); Has 8356 Blast hits to 5724 proteins in 193 species: Archae - 0; Bacteria - 4; Metazoa - 4841; Fungi - 1173; Plants - 674; Viruses - 8; Other Eukaryotes - 1656 (source: NCBI BLink).  protein_id AT5G22030.2p  transcript_id AT5G22030.2  protein_id AT5G22030.2p  transcript_id AT5G22030.2  
At5g22040	chr5:007298147	0.0	C/7298147-7298363,7297624-7297871,7297154-7297543	AT5G22040.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: zinc knuckle (CCHC-type) family protein (TAIR:AT3G62330.1); Has 34 Blast hits to 34 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G22040.1p  transcript_id AT5G22040.1  protein_id AT5G22040.1p  transcript_id AT5G22040.1  
At5g22040	chr5:007298147	0.0	C/7298147-7298363,7297624-7297871,7297154-7297543	AT5G22040.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: zinc knuckle (CCHC-type) family protein (TAIR:AT3G62330.1); Has 34 Blast hits to 34 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G22040.2p  transcript_id AT5G22040.2  protein_id AT5G22040.2p  transcript_id AT5G22040.2  
At5g22044	chr5:007299989	0.0	W/7299989-7300324	AT5G22044.1  pseudogenic_transcript  pseudo  function pseudogene of zinc finger (C3HC4-type RING finger) protein  
At5g22050	chr5:007301467	0.0	W/7301467-7301539,7301969-7302224,7302321-7302373,7302443-7302510,7302597-7302692,7302763-7302832,7302902-7303209	AT5G22050.2  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G19300.1); Has 12971 Blast hits to 12811 proteins in 303 species: Archae - 2; Bacteria - 29; Metazoa - 1031; Fungi - 14; Plants - 11547; Viruses - 17; Other Eukaryotes - 331 (source: NCBI BLink).  protein_id AT5G22050.2p  transcript_id AT5G22050.2  protein_id AT5G22050.2p  transcript_id AT5G22050.2  
At5g22050	chr5:007301467	0.0	W/7301467-7301539,7301969-7302224,7302321-7302373,7302443-7302510,7302597-7302692,7302770-7302832,7302919-7303209	AT5G22050.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G19300.1); Has 12135 Blast hits to 11988 proteins in 270 species: Archae - 0; Bacteria - 10; Metazoa - 724; Fungi - 2; Plants - 11160; Viruses - 10; Other Eukaryotes - 229 (source: NCBI BLink).  protein_id AT5G22050.1p  transcript_id AT5G22050.1  protein_id AT5G22050.1p  transcript_id AT5G22050.1  
At5g22060	chr5:007305516	0.0	C/7305516-7305668,7304877-7305184,7304500-7304776,7304217-7304415,7303798-7304120	AT5G22060.1  CDS  gene_syn ATJ2  gene ATJ2  function Co-chaperonin similar to E. coli DnaJ  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein folding|GO:0006457|7610169|ISS  go_process protein folding|GO:0006457||ISS  go_process response to salt stress|GO:0009651|11351099|IEP  go_function protein binding|GO:0005515|7610169|ISS  product ATJ2; protein binding  note ATJ2; FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, response to salt stress; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), Heat shock protein DnaJ, cysteine-rich region (InterPro:IPR001305); BEST Arabidopsis thaliana protein match is: ATJ3; protein binding (TAIR:AT3G44110.1); Has 18752 Blast hits to 18533 proteins in 2096 species: Archae - 122; Bacteria - 5585; Metazoa - 3563; Fungi - 1575; Plants - 1279; Viruses - 66; Other Eukaryotes - 6562 (source: NCBI BLink).  protein_id AT5G22060.1p  transcript_id AT5G22060.1  protein_id AT5G22060.1p  transcript_id AT5G22060.1  
At5g22070	chr5:007308255	0.0	W/7308255-7309343	AT5G22070.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF266, plant (InterPro:IPR004949); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52060.2); Has 333 Blast hits to 332 proteins in 16 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 305; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT5G22070.1p  transcript_id AT5G22070.1  protein_id AT5G22070.1p  transcript_id AT5G22070.1  
At5g22080	chr5:007313452	0.0	C/7313452-7313540,7312944-7313034,7312721-7312781,7312478-7312555,7312290-7312363,7311479-7311592,7311278-7311385,7310800-7310838,7310600-7310686	AT5G22080.1  CDS  go_function heat shock protein binding|GO:0031072||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: heat shock protein binding (TAIR:AT1G65280.1); Has 5549 Blast hits to 4474 proteins in 561 species: Archae - 45; Bacteria - 712; Metazoa - 1979; Fungi - 573; Plants - 223; Viruses - 6; Other Eukaryotes - 2011 (source: NCBI BLink).  protein_id AT5G22080.1p  transcript_id AT5G22080.1  protein_id AT5G22080.1p  transcript_id AT5G22080.1  
At5g22090	chr5:007315003	0.0	C/7315003-7316394	AT5G22090.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 1402 Blast hits to 1089 proteins in 133 species: Archae - 0; Bacteria - 73; Metazoa - 705; Fungi - 100; Plants - 130; Viruses - 21; Other Eukaryotes - 373 (source: NCBI BLink).  protein_id AT5G22090.1p  transcript_id AT5G22090.1  protein_id AT5G22090.1p  transcript_id AT5G22090.1  
At5g22100	chr5:007329015	0.0	W/7329015-7329213,7329451-7329600,7329684-7329862,7329943-7330118,7330202-7330415,7330509-7330718	AT5G22100.1  CDS  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA-3 -phosphate cyclase activity|GO:0003963||ISS  product RNA cyclase family protein  note RNA cyclase family protein; FUNCTIONS IN: RNA-3 -phosphate cyclase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA 3 -terminal phosphate cyclase- like (InterPro:IPR000228), RNA 3 -terminal phosphate cyclase, insert region (InterPro:IPR013796), RNA 3 -terminal phosphate cyclase-like, eukaryotic (InterPro:IPR016443), RNA 3 -terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (InterPro:IPR013792); Has 760 Blast hits to 750 proteins in 310 species: Archae - 113; Bacteria - 208; Metazoa - 233; Fungi - 95; Plants - 22; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT5G22100.1p  transcript_id AT5G22100.1  protein_id AT5G22100.1p  transcript_id AT5G22100.1  
At5g22110	chr5:007334010	0.0	C/7334010-7334178,7333749-7333917,7333411-7333564,7333174-7333305,7332947-7333024,7332500-7332604,7332304-7332384,7332089-7332219,7331904-7331998,7331714-7331813,7331486-7331600,7331283-7331393,7331071-7331211	AT5G22110.1  CDS  gene_syn ARABIDOPSIS THALIANA DNA POLYMERASE EPSILON SUBUNIT B2, ATDPB2, CYCLOPS 2, CYL2  gene ATDPB2  function Encodes a protein with similarity to DNA polymerase epsilon subunit B an essential gene that is required for DNA replication. Homozygous mutants are embryo lethal. Expressed in meristematic , rapidly dividing regions.  go_process DNA replication|GO:0006260||IEA  go_process DNA-dependent DNA replication|GO:0006261||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed DNA polymerase activity|GO:0003887||IEA  go_component nucleus|GO:0005634||ISS  go_component epsilon DNA polymerase complex|GO:0008622|16212602|IPI  go_function DNA-directed DNA polymerase activity|GO:0003887||ISS  product ATDPB2 (ARABIDOPSIS THALIANA DNA POLYMERASE EPSILON SUBUNIT B2); DNA binding / DNA-directed DNA polymerase/ nucleic acid binding  note ARABIDOPSIS THALIANA DNA POLYMERASE EPSILON SUBUNIT B2 (ATDPB2); FUNCTIONS IN: DNA-directed DNA polymerase activity, DNA binding, nucleic acid binding; INVOLVED IN: DNA replication, DNA-dependent DNA replication; LOCATED IN: nucleus, epsilon DNA polymerase complex; EXPRESSED IN: embryo, apical meristem, male gametophyte, female gametophyte; CONTAINS InterPro DOMAIN/s: DNA polymerase epsilon, subunit B (InterPro:IPR016266), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), DNA polymerase alpha/epsilon, subunit B (InterPro:IPR007185); Has 304 Blast hits to 287 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 97; Plants - 31; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT5G22110.1p  transcript_id AT5G22110.1  protein_id AT5G22110.1p  transcript_id AT5G22110.1  
At5g22120	chr5:007336436	0.0	C/7336436-7336755,7336224-7336306,7336075-7336137,7335727-7335972,7335415-7335576,7335023-7335112,7334612-7334799	AT5G22120.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 301 Blast hits to 280 proteins in 101 species: Archae - 0; Bacteria - 12; Metazoa - 142; Fungi - 94; Plants - 22; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT5G22120.1p  transcript_id AT5G22120.1  protein_id AT5G22120.1p  transcript_id AT5G22120.1  
At5g22130	chr5:007339789	0.0	C/7339789-7339831,7339334-7339597,7338990-7339172,7337932-7338476,7337486-7337803	AT5G22130.1  CDS  gene_syn PEANUT 1, PNT1  gene PNT1  function member of Glycosyltransferase Family- 50  go_component endoplasmic reticulum membrane|GO:0005789||IEA  go_component integral to membrane|GO:0016021||IEA  go_process GPI anchor biosynthetic process|GO:0006506|15772281|IMP  go_process embryonic development|GO:0009790|15772281|IMP  go_process plant-type cell wall biogenesis|GO:0009832|15772281|IMP  go_process cellulose biosynthetic process|GO:0030244|15772281|IMP  go_process cell division|GO:0051301|15772281|IMP  go_function mannosyltransferase activity|GO:0000030||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function alpha-1,4-mannosyltransferase activity|GO:0051751|15772281|ISS  product PNT1 (PEANUT 1); alpha-1,4-mannosyltransferase/ mannosyltransferase/ transferase, transferring glycosyl groups  note PEANUT 1 (PNT1); FUNCTIONS IN: mannosyltransferase activity, transferase activity, transferring glycosyl groups, alpha-1,4-mannosyltransferase activity; INVOLVED IN: embryonic development, GPI anchor biosynthetic process, plant-type cell wall biogenesis, cellulose biosynthetic process, cell division; LOCATED IN: integral to membrane, endoplasmic reticulum membrane; CONTAINS InterPro DOMAIN/s: Mannosyltransferase, DXD (InterPro:IPR007704); Has 342 Blast hits to 338 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 128; Fungi - 107; Plants - 30; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT5G22130.1p  transcript_id AT5G22130.1  protein_id AT5G22130.1p  transcript_id AT5G22130.1  
At5g22140	chr5:007341182	0.0	C/7341182-7341398,7340639-7341090,7340284-7340550	AT5G22140.2  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function electron carrier activity|GO:0009055||ISS  product pyridine nucleotide-disulphide oxidoreductase family protein  note pyridine nucleotide-disulphide oxidoreductase family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: pyridine nucleotide-disulphide oxidoreductase family protein (TAIR:AT3G44190.1); Has 6843 Blast hits to 6842 proteins in 1276 species: Archae - 167; Bacteria - 4938; Metazoa - 200; Fungi - 372; Plants - 198; Viruses - 0; Other Eukaryotes - 968 (source: NCBI BLink).  protein_id AT5G22140.2p  transcript_id AT5G22140.2  protein_id AT5G22140.2p  transcript_id AT5G22140.2  
At5g22140	chr5:007341536	0.0	C/7341536-7341657,7341182-7341438,7340639-7341090,7340284-7340550	AT5G22140.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function electron carrier activity|GO:0009055||ISS  product pyridine nucleotide-disulphide oxidoreductase family protein  note pyridine nucleotide-disulphide oxidoreductase family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: pyridine nucleotide-disulphide oxidoreductase family protein (TAIR:AT3G44190.1); Has 8697 Blast hits to 8694 proteins in 1406 species: Archae - 266; Bacteria - 6387; Metazoa - 242; Fungi - 449; Plants - 207; Viruses - 0; Other Eukaryotes - 1146 (source: NCBI BLink).  protein_id AT5G22140.1p  transcript_id AT5G22140.1  protein_id AT5G22140.1p  transcript_id AT5G22140.1  
At5g22150	chr5:007342567	0.0	W/7342567-7342886,7342960-7343188,7345513-7345956	AT5G22150.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22160.1); Has 13 Blast hits to 13 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G22150.1p  transcript_id AT5G22150.1  protein_id AT5G22150.1p  transcript_id AT5G22150.1  
At5g22160	chr5:007346944	0.0	W/7346944-7347233,7347350-7347669,7348804-7349255	AT5G22160.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22150.1); Has 14 Blast hits to 14 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G22160.1p  transcript_id AT5G22160.1  protein_id AT5G22160.1p  transcript_id AT5G22160.1  
At5g22170	chr5:007350575	0.0	W/7350575-7350842,7350919-7351190	AT5G22170.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22150.1); Has 9 Blast hits to 9 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G22170.1p  transcript_id AT5G22170.1  protein_id AT5G22170.1p  transcript_id AT5G22170.1  
At5g22180	chr5:007353547	0.0	C/7353547-7353706,7353324-7353490,7353070-7353252	AT5G22180.1  CDS  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22160.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G22180.1p  transcript_id AT5G22180.1  protein_id AT5G22180.1p  transcript_id AT5G22180.1  
At5g22190	chr5:007354164	0.0	W/7354164-7354180,7354262-7354406,7354497-7354688	AT5G22190.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22160.1); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G22190.1p  transcript_id AT5G22190.1  protein_id AT5G22190.1p  transcript_id AT5G22190.1  
At5g22200	chr5:007355688	0.0	W/7355688-7356002,7356554-7356871	AT5G22200.1  CDS  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product harpin-induced family protein / HIN1 family protein / harpin-responsive family protein  note harpin-induced family protein / HIN1 family protein / harpin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: harpin-induced family protein / HIN1 family protein / harpin-responsive family protein (TAIR:AT3G44220.1); Has 593 Blast hits to 593 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 593; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G22200.1p  transcript_id AT5G22200.1  protein_id AT5G22200.1p  transcript_id AT5G22200.1  
At5g22210	chr5:007359549	0.0	W/7359549-7359791	AT5G22210.1  CDS  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G22210.1p  transcript_id AT5G22210.1  protein_id AT5G22210.1p  transcript_id AT5G22210.1  
At5g22210	chr5:007359549	0.0	W/7359549-7359791	AT5G22210.2  CDS  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G22210.2p  transcript_id AT5G22210.2  protein_id AT5G22210.2p  transcript_id AT5G22210.2  
At5g22220	chr5:007360749	0.0	W/7360749-7360931,7361402-7361564,7361696-7361752,7361834-7361919,7361999-7362087,7362182-7362236,7362695-7362747,7362822-7362872,7362950-7362998,7363086-7363151,7363232-7363305,7363391-7363661,7363792-7363861,7363978-7364120	AT5G22220.2  CDS  gene_syn ATE2FB, E2F TRANSCRIPTION FACTOR-1 E2F1, E2F1, E2FB, E2FB TRANSCRIPTION FACTOR  gene E2F1  function Member of the E2F transcription factors, (cell cycle genes), key components of the cyclin D/retinoblastoma/E2F pathway. Binds DPA and RBR1 proteins. Expressed throughout the cell cycle. Abundance increased by auxin through stabilization of the protein. Elevates CDK levels and activity, even under hormone-free conditions. Promotes cell division and shortens cell doubling time, inhibits cell growth. Transgenic plants overexpressing AtE2Fa contained an increased level of AtE2Fb transcripts that is paralleled by an increase in the amount of the AtE2Fb protein, suggesting that AtE2Fb expression might actually be up-regulated by the AtE2Fa transcription factor.  go_component nucleus|GO:0005634|16514015|IDA  go_component transcription factor complex|GO:0005667||ISS  go_component cytoplasm|GO:0005737|16514015|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to auxin stimulus|GO:0009733|16055635|IEP  go_process trichome morphogenesis|GO:0010090|16514015|IMP  go_process regulation of cell division|GO:0051302|16055635|IMP  go_process positive regulation of meiotic cell cycle|GO:0051446|16055635|IMP  go_function DNA binding|GO:0003677|11786543|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function protein binding|GO:0005515|16055635|IPI  product E2F1; DNA binding / protein binding / transcription factor  note E2F1; FUNCTIONS IN: protein binding, transcription factor activity, DNA binding; INVOLVED IN: response to auxin stimulus, regulation of cell division, regulation of transcription, DNA-dependent, positive regulation of meiotic cell cycle, trichome morphogenesis; LOCATED IN: transcription factor complex, nucleus, cytoplasm; EXPRESSED IN: 36 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Transcription factor E2F/dimerisation partner (TDP) (InterPro:IPR003316), E2F Family (InterPro:IPR015633); BEST Arabidopsis thaliana protein match is: E2F3 (E2F TRANSCRIPTION FACTOR 3); DNA binding / transcription factor (TAIR:AT2G36010.1); Has 772 Blast hits to 742 proteins in 87 species: Archae - 0; Bacteria - 4; Metazoa - 515; Fungi - 4; Plants - 153; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT5G22220.2p  transcript_id AT5G22220.2  protein_id AT5G22220.2p  transcript_id AT5G22220.2  
At5g22220	chr5:007360749	0.0	W/7360749-7360931,7361402-7361564,7361696-7361752,7361834-7361919,7361999-7362087,7362182-7362236,7362695-7362747,7362822-7362872,7362950-7362998,7363086-7363151,7363232-7363305,7363391-7363661,7363792-7363861,7363987-7364120	AT5G22220.3  CDS  gene_syn ATE2FB, E2F TRANSCRIPTION FACTOR-1 E2F1, E2F1, E2FB, E2FB TRANSCRIPTION FACTOR  gene E2F1  function Member of the E2F transcription factors, (cell cycle genes), key components of the cyclin D/retinoblastoma/E2F pathway. Binds DPA and RBR1 proteins. Expressed throughout the cell cycle. Abundance increased by auxin through stabilization of the protein. Elevates CDK levels and activity, even under hormone-free conditions. Promotes cell division and shortens cell doubling time, inhibits cell growth. Transgenic plants overexpressing AtE2Fa contained an increased level of AtE2Fb transcripts that is paralleled by an increase in the amount of the AtE2Fb protein, suggesting that AtE2Fb expression might actually be up-regulated by the AtE2Fa transcription factor.  go_component nucleus|GO:0005634|16514015|IDA  go_component transcription factor complex|GO:0005667||ISS  go_component cytoplasm|GO:0005737|16514015|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to auxin stimulus|GO:0009733|16055635|IEP  go_process trichome morphogenesis|GO:0010090|16514015|IMP  go_process regulation of cell division|GO:0051302|16055635|IMP  go_process positive regulation of meiotic cell cycle|GO:0051446|16055635|IMP  go_function DNA binding|GO:0003677|11786543|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function protein binding|GO:0005515|16055635|IPI  product E2F1; DNA binding / protein binding / transcription factor  note E2F1; FUNCTIONS IN: protein binding, transcription factor activity, DNA binding; INVOLVED IN: response to auxin stimulus, regulation of cell division, regulation of transcription, DNA-dependent, positive regulation of meiotic cell cycle, trichome morphogenesis; LOCATED IN: transcription factor complex, nucleus, cytoplasm; EXPRESSED IN: 36 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Transcription factor E2F/dimerisation partner (TDP) (InterPro:IPR003316), E2F Family (InterPro:IPR015633); BEST Arabidopsis thaliana protein match is: E2F3 (E2F TRANSCRIPTION FACTOR 3); DNA binding / transcription factor (TAIR:AT2G36010.1); Has 771 Blast hits to 741 proteins in 87 species: Archae - 0; Bacteria - 4; Metazoa - 516; Fungi - 4; Plants - 153; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).  protein_id AT5G22220.3p  transcript_id AT5G22220.3  protein_id AT5G22220.3p  transcript_id AT5G22220.3  
At5g22240	chr5:007364689	0.0	W/7364689-7365279	AT5G22240.1  CDS  gene_syn ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 10, ATOFP10, OFP10, T6G21.1  gene OFP10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product OFP10  note OFP10; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623, plant (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: OFP6 (OVATE FAMILY PROTEIN 6) (TAIR:AT3G52525.1); Has 188 Blast hits to 188 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 188; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G22240.1p  transcript_id AT5G22240.1  protein_id AT5G22240.1p  transcript_id AT5G22240.1  
At5g22250	chr5:007365605	0.0	C/7365605-7366441	AT5G22250.1  CDS  gene_syn T6G21.2  go_component nucleus|GO:0005634||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process RNA modification|GO:0009451||ISS  go_function ribonuclease activity|GO:0004540||ISS  product CCR4-NOT transcription complex protein, putative  note CCR4-NOT transcription complex protein, putative; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: CCR4-NOT transcription complex protein, putative (TAIR:AT3G44260.1); Has 630 Blast hits to 622 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 218; Fungi - 95; Plants - 219; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT5G22250.1p  transcript_id AT5G22250.1  protein_id AT5G22250.1p  transcript_id AT5G22250.1  
At5g22260	chr5:007369880	0.0	C/7369880-7370192,7369285-7369567,7367707-7369129	AT5G22260.1  CDS  gene_syn MALE STERILITY 1 PROTEIN, MS1, T6G21.3, male sterility 1  gene MS1  function Sporophytic factor controlling anther and pollen development. Mutants fail to make functional pollen;pollen degeneration occurs after microspore release and the tapetum also appears abnormally vacuolated. Similar to PHD-finger motif transcription factors.  go_component nucleus|GO:0005634|12461128|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process microsporogenesis|GO:0009556|18032629|IDA  go_process pollen germination|GO:0009846|12461128|IMP  go_process pollen wall assembly|GO:0010208|18032630|IMP  go_process tapetal layer morphogenesis|GO:0048655|18032630|IMP  go_process microgametogenesis|GO:0055046|18032630|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product MS1 (male sterility 1); DNA binding / transcription factor  note male sterility 1 (MS1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: microspore, anther; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: MMD1 (MALE MEIOCYTE DEATH 1); DNA binding / protein binding / zinc ion binding (TAIR:AT1G66170.1); Has 575 Blast hits to 570 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 236; Fungi - 203; Plants - 118; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT5G22260.1p  transcript_id AT5G22260.1  protein_id AT5G22260.1p  transcript_id AT5G22260.1  
At5g22270	chr5:007372487	0.0	C/7372487-7372768	AT5G22270.1  CDS  gene_syn T6G21.5  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06270.1); Has 75 Blast hits to 75 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G22270.1p  transcript_id AT5G22270.1  protein_id AT5G22270.1p  transcript_id AT5G22270.1  
At5g22280	chr5:007374957	0.0	C/7374957-7375112,7374211-7374381	AT5G22280.1  CDS  gene_syn T6G21.7  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44280.1); Has 47 Blast hits to 47 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G22280.1p  transcript_id AT5G22280.1  protein_id AT5G22280.1p  transcript_id AT5G22280.1  
At5g22280	chr5:007375506	0.0	C/7375506-7375538,7374957-7375055,7374211-7374381	AT5G22280.2  CDS  gene_syn T6G21.7  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44280.1); Has 42 Blast hits to 42 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G22280.2p  transcript_id AT5G22280.2  protein_id AT5G22280.2p  transcript_id AT5G22280.2  
At5g22290	chr5:007377297	0.0	C/7377297-7377498,7376863-7377116,7376466-7376696,7376044-7376379	AT5G22290.1  CDS  gene_syn Arabidopsis NAC domain containing protein 89, T6G21.9, anac089  gene anac089  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac089 (Arabidopsis NAC domain containing protein 89); transcription factor  note Arabidopsis NAC domain containing protein 89 (anac089); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac060 (Arabidopsis NAC domain containing protein 60); transcription factor (TAIR:AT3G44290.1); Has 1506 Blast hits to 1504 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1506; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G22290.1p  transcript_id AT5G22290.1  protein_id AT5G22290.1p  transcript_id AT5G22290.1  
At5g22300	chr5:007379401	0.0	W/7379401-7379563,7379645-7379824,7380855-7381148,7381248-7381529,7381616-7381764	AT5G22300.1  CDS  gene_syn NIT4, NITRILASE 4, T6G21.6  gene NIT4  function encodes a nitrilase isomer. The purified enzyme shows a strong substrate specificity for beta-cyano-L-alanine, a intermediate product of the cyanide detoxification pathway.  go_component cellular_component|GO:0005575||ND  go_process cyanide metabolic process|GO:0019499|11060302|IEP  go_process detoxification of nitrogen compound|GO:0051410|11060302|IEP  go_function nitrilase activity|GO:0000257|11060302|IDA  go_function nitrile hydratase activity|GO:0018822|11060302|IDA  go_function cyanoalanine nitrilase activity|GO:0047427|11060302|IDA  go_function 3-cyanoalanine hydratase activity|GO:0047558|11060302|IDA  go_function indole-3-acetonitrile nitrilase activity|GO:0080061|11060302|IDA  go_function indole-3-acetonitrile nitrilase activity|GO:0080061|8022831|IDA  product NIT4 (NITRILASE 4); 3-cyanoalanine hydratase/ cyanoalanine nitrilase/ indole-3-acetonitrile nitrilase/ nitrilase/ nitrile hydratase  note NITRILASE 4 (NIT4); FUNCTIONS IN: 3-cyanoalanine hydratase activity, indole-3-acetonitrile nitrilase activity, nitrile hydratase activity, cyanoalanine nitrilase activity, nitrilase activity; INVOLVED IN: detoxification of nitrogen compound, cyanide metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (InterPro:IPR003010), Nitrilase/cyanide hydratase, conserved site (InterPro:IPR000132); BEST Arabidopsis thaliana protein match is: NIT2 (nitrilase 2); indole-3-acetonitrile nitrilase/ indole-3-acetonitrile nitrile hydratase/ nitrilase (TAIR:AT3G44300.1); Has 4981 Blast hits to 4929 proteins in 989 species: Archae - 96; Bacteria - 2894; Metazoa - 317; Fungi - 358; Plants - 201; Viruses - 11; Other Eukaryotes - 1104 (source: NCBI BLink).  protein_id AT5G22300.1p  transcript_id AT5G22300.1  protein_id AT5G22300.1p  transcript_id AT5G22300.1  
At5g22310	chr5:007384917	0.0	C/7384917-7385345,7384741-7384833,7383742-7384665	AT5G22310.1  CDS  gene_syn MWD9.9, MWD9_9  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11590.1); Has 15283 Blast hits to 10460 proteins in 691 species: Archae - 190; Bacteria - 989; Metazoa - 7935; Fungi - 1198; Plants - 503; Viruses - 78; Other Eukaryotes - 4390 (source: NCBI BLink).  protein_id AT5G22310.1p  transcript_id AT5G22310.1  protein_id AT5G22310.1p  transcript_id AT5G22310.1  
At5g22315	chr5:007387888	0.0	W/7387888-7387959	AT5G22315.1  tRNA  gene_syn 67651.TRNA-GLN-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gln (anticodon: CTG)  transcript_id AT5G22315.1  
At5g22320	chr5:007390328	0.0	C/7390328-7390426,7390176-7390247,7389977-7390069,7389748-7389829,7389610-7389666,7389453-7389517,7389284-7389379,7389093-7389179,7388898-7388978,7388175-7388801	AT5G22320.1  CDS  gene_syn MWD9.11, MWD9_11  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT5G19680.1); Has 55923 Blast hits to 30529 proteins in 1067 species: Archae - 70; Bacteria - 9903; Metazoa - 23724; Fungi - 3334; Plants - 3729; Viruses - 336; Other Eukaryotes - 14827 (source: NCBI BLink).  protein_id AT5G22320.1p  transcript_id AT5G22320.1  protein_id AT5G22320.1p  transcript_id AT5G22320.1  
At5g22330	chr5:007393982	0.0	C/7393982-7394071,7393220-7393408,7392968-7393099,7392727-7392876,7392365-7392520,7392073-7392207,7391922-7391987,7391719-7391825,7391528-7391627,7391358-7391449,7391206-7391275,7391026-7391115	AT5G22330.1  CDS  gene_syn ATTIP49A, MWD9.12, MWD9_12, RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1, RIN1  gene RIN1  go_component nucleolus|GO:0005730|15496452|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component nucleus|GO:0005634|15469496|IDA  go_process defense response to fungus, incompatible interaction|GO:0009817|12062092|IMP  go_process meristem development|GO:0048507|12062092|IMP  go_function protein binding|GO:0005515|12062092|IPI  product RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1); protein binding  note RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1 (RIN1); FUNCTIONS IN: protein binding; INVOLVED IN: defense response to fungus, incompatible interaction, meristem development; LOCATED IN: nucleolus, nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TIP49, C-terminal (InterPro:IPR010339), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: DNA helicase, putative (TAIR:AT5G67630.1); Has 2675 Blast hits to 2634 proteins in 789 species: Archae - 254; Bacteria - 1222; Metazoa - 326; Fungi - 290; Plants - 78; Viruses - 0; Other Eukaryotes - 505 (source: NCBI BLink).  protein_id AT5G22330.1p  transcript_id AT5G22330.1  protein_id AT5G22330.1p  transcript_id AT5G22330.1  
At5g22340	chr5:007394509	0.0	W/7394509-7394659,7394746-7394918,7395219-7395338,7395443-7395499,7395665-7395745,7395833-7395867,7395987-7396076,7396173-7396332,7396450-7396554	AT5G22340.1  CDS  gene_syn MWD9.13, MWD9_13  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 28 Blast hits to 28 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G22340.1p  transcript_id AT5G22340.1  protein_id AT5G22340.1p  transcript_id AT5G22340.1  
At5g22340	chr5:007394509	0.0	W/7394509-7394659,7394746-7394918,7395219-7395338,7395443-7395499,7395665-7395745,7395833-7395867,7395987-7396076,7396173-7396332,7396454-7396609	AT5G22340.2  CDS  gene_syn MWD9.13, MWD9_13  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G22340.2p  transcript_id AT5G22340.2  protein_id AT5G22340.2p  transcript_id AT5G22340.2  
At5g22350	chr5:007400561	0.0	C/7400561-7400746,7399639-7399880,7399358-7399454,7399007-7399156,7398784-7398910,7398537-7398649,7398388-7398451,7398199-7398292,7398011-7398119,7397762-7397863	AT5G22350.1  CDS  gene_syn ELM1, ELONGATED MITOCHONDRIA 1, MWD9.14, MWD9_14  gene ELM1  go_component mitochondrial outer membrane|GO:0005741|18559960|IDA  go_process mitochondrial fission|GO:0000266|18559960|IMP  go_process protein localization in organelle|GO:0033365|18559960|IMP  product ELM1 (ELONGATED MITOCHONDRIA 1)  note ELONGATED MITOCHONDRIA 1 (ELM1); INVOLVED IN: mitochondrial fission, protein localization in organelle; LOCATED IN: mitochondrial outer membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1022 (InterPro:IPR009367); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06180.2); Has 1314 Blast hits to 1314 proteins in 78 species: Archae - 0; Bacteria - 145; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 1141 (source: NCBI BLink).  protein_id AT5G22350.1p  transcript_id AT5G22350.1  protein_id AT5G22350.1p  transcript_id AT5G22350.1  
At5g22355	chr5:007401762	0.0	W/7401762-7403756	AT5G22355.1  CDS  go_process intracellular signaling cascade|GO:0007242||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular signaling cascade; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Zinc finger, RING-type (InterPro:IPR001841), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein / UV-B light-insensitive protein, putative (TAIR:AT5G59940.1); Has 1487 Blast hits to 536 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 21; Fungi - 2; Plants - 1448; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT5G22355.1p  transcript_id AT5G22355.1  protein_id AT5G22355.1p  transcript_id AT5G22355.1  
At5g22360	chr5:007405435	0.0	C/7405435-7405654,7405137-7405327,7404805-7404968,7404379-7404469	AT5G22360.1  CDS  gene_syn ATVAMP714, MWD9.16, MWD9_16, VAMP714, VESICLE-ASSOCIATED MEMBRANE PROTEIN 714  gene ATVAMP714  function Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family.  go_component vacuole|GO:0005773|14760709|IDA  go_component Golgi apparatus|GO:0005794|15876431|TAS  go_component membrane|GO:0016020||ISS  go_process response to salt stress|GO:0009651|17101982|IMP  go_function molecular_function|GO:0003674||ND  product ATVAMP714 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 714)  note VESICLE-ASSOCIATED MEMBRANE PROTEIN 714 (ATVAMP714); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: Golgi apparatus, vacuole, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: ATVAMP713 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 713) (TAIR:AT5G11150.1); Has 1708 Blast hits to 1707 proteins in 203 species: Archae - 0; Bacteria - 0; Metazoa - 734; Fungi - 322; Plants - 342; Viruses - 0; Other Eukaryotes - 310 (source: NCBI BLink).  protein_id AT5G22360.1p  transcript_id AT5G22360.1  protein_id AT5G22360.1p  transcript_id AT5G22360.1  
At5g22370	chr5:007406587	0.0	W/7406587-7406678,7406986-7407030,7407106-7407185,7407276-7407350,7407440-7407543,7407631-7407787,7407880-7407967,7408067-7408139,7408217-7408347,7408458-7408509	AT5G22370.1  CDS  gene_syn EMB1705, EMBRYO DEFECTIVE 1705, MWD9.17, MWD9_17, QQT1, QUATRE-QUART 1  gene QQT1  function Encodes QQT1. Required for early embryo development. qqt1 mutant lines are embryo-defective. Participates in the organization of microtubules during cell division. Interacts with QQT2 (encoded by AT4G21800).  go_function nucleotide binding|GO:0000166||IEA  go_component microtubule|GO:0005874|17419841|IDA  go_process embryonic development|GO:0009790|17419841|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process cell division|GO:0051301|17419841|IMP  go_function ATP binding|GO:0005524||ISS  product QQT1 (QUATRE-QUART 1); ATP binding / nucleotide binding  note QUATRE-QUART 1 (QQT1); FUNCTIONS IN: nucleotide binding, ATP binding; INVOLVED IN: embryonic development ending in seed dormancy, embryonic development, cell division; LOCATED IN: microtubule; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function, ATP binding (InterPro:IPR004130); BEST Arabidopsis thaliana protein match is: ATP-binding family protein (TAIR:AT4G12790.5); Has 1064 Blast hits to 1063 proteins in 200 species: Archae - 79; Bacteria - 5; Metazoa - 342; Fungi - 274; Plants - 77; Viruses - 0; Other Eukaryotes - 287 (source: NCBI BLink).  protein_id AT5G22370.1p  transcript_id AT5G22370.1  protein_id AT5G22370.1p  transcript_id AT5G22370.1  
At5g22370	chr5:007406587	0.0	W/7406587-7406678,7406986-7407030,7407106-7407185,7407276-7407350,7407440-7407543,7407631-7407787,7407880-7407967,7408067-7408139,7408217-7408347,7408458-7408509	AT5G22370.2  CDS  gene_syn EMB1705, EMBRYO DEFECTIVE 1705, MWD9.17, MWD9_17, QQT1, QUATRE-QUART 1  gene QQT1  function Encodes QQT1. Required for early embryo development. qqt1 mutant lines are embryo-defective. Participates in the organization of microtubules during cell division. Interacts with QQT2 (encoded by AT4G21800).  go_function nucleotide binding|GO:0000166||IEA  go_component microtubule|GO:0005874|17419841|IDA  go_process embryonic development|GO:0009790|17419841|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process cell division|GO:0051301|17419841|IMP  go_function ATP binding|GO:0005524||ISS  product QQT1 (QUATRE-QUART 1); ATP binding / nucleotide binding  note QUATRE-QUART 1 (QQT1); FUNCTIONS IN: nucleotide binding, ATP binding; INVOLVED IN: embryonic development ending in seed dormancy, embryonic development, cell division; LOCATED IN: microtubule; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function, ATP binding (InterPro:IPR004130); BEST Arabidopsis thaliana protein match is: ATP-binding family protein (TAIR:AT4G12790.5); Has 1064 Blast hits to 1063 proteins in 200 species: Archae - 79; Bacteria - 5; Metazoa - 342; Fungi - 274; Plants - 77; Viruses - 0; Other Eukaryotes - 287 (source: NCBI BLink).  protein_id AT5G22370.2p  transcript_id AT5G22370.2  protein_id AT5G22370.2p  transcript_id AT5G22370.2  
At5g22380	chr5:007409879	0.0	C/7409879-7410038,7409277-7409563,7408924-7409184	AT5G22380.1  CDS  gene_syn Arabidopsis NAC domain containing protein 90, MWD9.18, MWD9_18, anac090  gene anac090  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac090 (Arabidopsis NAC domain containing protein 90); transcription factor  note Arabidopsis NAC domain containing protein 90 (anac090); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac061 (Arabidopsis NAC domain containing protein 61); transcription factor (TAIR:AT3G44350.2); Has 1470 Blast hits to 1468 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G22380.1p  transcript_id AT5G22380.1  protein_id AT5G22380.1p  transcript_id AT5G22380.1  
At5g22390	chr5:007418383	0.0	C/7418383-7418991	AT5G22390.1  CDS  gene_syn MWD9.19, MWD9_19  product unknown protein  note unknown protein; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; Has 146 Blast hits to 145 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 32; Fungi - 5; Plants - 82; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT5G22390.1p  transcript_id AT5G22390.1  protein_id AT5G22390.1p  transcript_id AT5G22390.1  
At5g22400	chr5:007424869	0.0	C/7424869-7425335,7424110-7424230,7423904-7424023,7423597-7423827,7423050-7423511	AT5G22400.1  CDS  gene_syn MWD9.20, MWD9_20  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_process signal transduction|GO:0007165||IEA  go_function Rac GTPase activator activity|GO:0030675||ISS  product rac GTPase activating protein, putative  note rac GTPase activating protein, putative; FUNCTIONS IN: Rac GTPase activator activity; INVOLVED IN: signal transduction; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095), Rho GTPase activation protein (InterPro:IPR008936), RhoGAP (InterPro:IPR000198); BEST Arabidopsis thaliana protein match is: rac GTPase activating protein, putative (TAIR:AT3G11490.1); Has 3182 Blast hits to 3181 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 2465; Fungi - 299; Plants - 108; Viruses - 0; Other Eukaryotes - 310 (source: NCBI BLink).  protein_id AT5G22400.1p  transcript_id AT5G22400.1  protein_id AT5G22400.1p  transcript_id AT5G22400.1  
At5g22410	chr5:007426347	0.0	W/7426347-7426565,7426675-7426854,7426947-7427112,7427292-7427722	AT5G22410.1  CDS  gene_syn MWD9.21, MWD9_21  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase 57 (PER57) (P57) (PRXR10) (TAIR:AT5G17820.1); Has 2424 Blast hits to 2416 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 12; Plants - 2406; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G22410.1p  transcript_id AT5G22410.1  protein_id AT5G22410.1p  transcript_id AT5G22410.1  
At5g22420	chr5:007429903	0.0	W/7429903-7429978,7430143-7430233,7430639-7430739,7431069-7431261,7431355-7431516,7431627-7431708,7431808-7432074,7432188-7432312,7432454-7432586	AT5G22420.1  CDS  gene_syn FAR7, FATTY ACID REDUCTASE 7, MWD9.22, MWD9_22  gene FAR7  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process microsporogenesis|GO:0009556||ISS  go_function oxidoreductase activity, acting on the CH-CH group of donors|GO:0016627||ISS  product FAR7 (FATTY ACID REDUCTASE 7); binding / catalytic/ oxidoreductase, acting on the CH-CH group of donors  note FATTY ACID REDUCTASE 7 (FAR7); FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors, binding, catalytic activity; INVOLVED IN: microsporogenesis, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, petal, sepal, flower, stamen; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Male sterility (InterPro:IPR004262), NAD(P)-binding (InterPro:IPR016040), Male sterility, NAD-binding (InterPro:IPR013120); BEST Arabidopsis thaliana protein match is: FAR1 (FATTY ACID REDUCTASE 1); fatty acyl-CoA reductase (alcohol-forming)/ oxidoreductase, acting on the CH-CH group of donors (TAIR:AT5G22500.1); Has 1471 Blast hits to 1109 proteins in 114 species: Archae - 0; Bacteria - 78; Metazoa - 1083; Fungi - 10; Plants - 223; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT5G22420.1p  transcript_id AT5G22420.1  protein_id AT5G22420.1p  transcript_id AT5G22420.1  
At5g22430	chr5:007433913	0.0	W/7433913-7434048,7434264-7434646	AT5G22430.1  CDS  gene_syn MWD9.23, MWD9_23  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G27385.1); Has 15 Blast hits to 15 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G22430.1p  transcript_id AT5G22430.1  protein_id AT5G22430.1p  transcript_id AT5G22430.1  
At5g22440	chr5:007436482	0.0	C/7436482-7436486,7436020-7436242,7435768-7435933,7435468-7435673,7435328-7435381	AT5G22440.1  CDS  gene_syn MWD9.24, MWD9_24  go_component nucleolus|GO:0005730|15496452|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process RNA processing|GO:0006396||IEA  go_process translation|GO:0006412||IEA  go_function RNA binding|GO:0003723||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L10A (RPL10aC)  note 60S ribosomal protein L10A (RPL10aC); FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro:IPR016094); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L10A (RPL10aA) (TAIR:AT1G08360.1); Has 3069 Blast hits to 3069 proteins in 947 species: Archae - 186; Bacteria - 1384; Metazoa - 354; Fungi - 122; Plants - 241; Viruses - 0; Other Eukaryotes - 782 (source: NCBI BLink).  protein_id AT5G22440.1p  transcript_id AT5G22440.1  protein_id AT5G22440.1p  transcript_id AT5G22440.1  
At5g22440	chr5:007436482	0.0	C/7436482-7436486,7436020-7436242,7435768-7435933,7435468-7435673,7435328-7435381	AT5G22440.2  CDS  gene_syn MWD9.24, MWD9_24  go_process RNA processing|GO:0006396||IEA  go_process translation|GO:0006412||IEA  go_function RNA binding|GO:0003723||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L10A (RPL10aC)  note 60S ribosomal protein L10A (RPL10aC); FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro:IPR016094); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L10A (RPL10aA) (TAIR:AT1G08360.1); Has 3069 Blast hits to 3069 proteins in 947 species: Archae - 186; Bacteria - 1384; Metazoa - 354; Fungi - 122; Plants - 241; Viruses - 0; Other Eukaryotes - 782 (source: NCBI BLink).  protein_id AT5G22440.2p  transcript_id AT5G22440.2  protein_id AT5G22440.2p  transcript_id AT5G22440.2  
At5g22450	chr5:007442582	0.0	C/7442582-7442856,7442257-7442497,7441737-7442002,7441076-7441240,7440844-7440983,7440232-7440763,7440052-7440143,7439668-7439730,7439499-7439587,7439348-7439413,7438630-7439259,7438457-7438522,7438268-7438338,7438133-7438190,7437794-7438049,7437145-7437599	AT5G22450.1  CDS  gene_syn MWD9.25, MWD9_25  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19390.1); Has 266 Blast hits to 213 proteins in 63 species: Archae - 0; Bacteria - 23; Metazoa - 106; Fungi - 19; Plants - 52; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT5G22450.1p  transcript_id AT5G22450.1  protein_id AT5G22450.1p  transcript_id AT5G22450.1  
At5g22460	chr5:007445018	0.0	C/7445018-7445269,7444395-7444606,7444043-7444310,7443659-7443949	AT5G22460.1  CDS  gene_syn MWD9.26, MWD9_26  go_component cell wall|GO:0005618|16287169|IDA  go_component vacuole|GO:0005773|14760709|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product esterase/lipase/thioesterase family protein  note esterase/lipase/thioesterase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, vacuole, plant-type cell wall; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: esterase/lipase/thioesterase family protein (TAIR:AT1G74300.1); Has 513 Blast hits to 511 proteins in 137 species: Archae - 0; Bacteria - 256; Metazoa - 0; Fungi - 21; Plants - 189; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT5G22460.1p  transcript_id AT5G22460.1  protein_id AT5G22460.1p  transcript_id AT5G22460.1  
At5g22460	chr5:007445018	0.0	C/7445018-7445269,7444395-7444606,7444043-7444310,7443659-7443949	AT5G22460.2  CDS  gene_syn MWD9.26, MWD9_26  go_component cell wall|GO:0005618|16287169|IDA  go_component vacuole|GO:0005773|14760709|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product esterase/lipase/thioesterase family protein  note esterase/lipase/thioesterase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, vacuole, plant-type cell wall; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: esterase/lipase/thioesterase family protein (TAIR:AT1G74300.1); Has 513 Blast hits to 511 proteins in 137 species: Archae - 0; Bacteria - 256; Metazoa - 0; Fungi - 21; Plants - 189; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT5G22460.2p  transcript_id AT5G22460.2  protein_id AT5G22460.2p  transcript_id AT5G22460.2  
At5g22470	chr5:007447045	0.0	W/7447045-7447098,7447179-7447417,7447491-7447689,7447765-7447878,7447968-7448095,7448183-7448357,7448437-7448570,7448650-7448887,7448983-7449110,7449194-7449270,7449359-7449519,7449605-7449814,7449896-7449998,7450081-7450163,7450248-7450574,7450669-7450743	AT5G22470.1  CDS  gene_syn MQJ16.1, MQJ16_1  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||IEA  go_process protein amino acid ADP-ribosylation|GO:0006471||IEA  go_function NAD+ ADP-ribosyltransferase activity|GO:0003950||IEA  go_component nucleus|GO:0005634||ISS  go_process protein amino acid ADP-ribosylation|GO:0006471||ISS  go_function NAD+ ADP-ribosyltransferase activity|GO:0003950||ISS  product NAD+ ADP-ribosyltransferase  note NAD+ ADP-ribosyltransferase; FUNCTIONS IN: NAD+ ADP-ribosyltransferase activity; INVOLVED IN: protein amino acid ADP-ribosylation; LOCATED IN: intracellular, nucleus; CONTAINS InterPro DOMAIN/s: WGR (InterPro:IPR008893), Poly(ADP-ribose) polymerase, regulatory region (InterPro:IPR004102), PADR1 (InterPro:IPR012982), Poly(ADP-ribose) polymerase, catalytic region (InterPro:IPR012317), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: PARP2 (POLY(ADP-RIBOSE) POLYMERASE 2); DNA binding / NAD or NADH binding / NAD+ ADP-ribosyltransferase/ zinc ion binding (TAIR:AT2G31320.1); Has 515 Blast hits to 506 proteins in 104 species: Archae - 0; Bacteria - 9; Metazoa - 313; Fungi - 39; Plants - 59; Viruses - 2; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT5G22470.1p  transcript_id AT5G22470.1  protein_id AT5G22470.1p  transcript_id AT5G22470.1  
At5g22480	chr5:007456046	0.0	C/7456046-7456168,7455497-7455541,7455250-7455290,7455064-7455145,7454846-7454890,7454580-7454636,7454187-7454246,7453967-7454094,7453627-7453879,7453397-7453463,7453215-7453285,7453035-7453124,7452512-7452620,7452153-7452244,7451952-7452057,7451643-7451755	AT5G22480.1  CDS  gene_syn MQJ16.2, MQJ16_2  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (ZPR1-type) family protein  note zinc finger (ZPR1-type) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, ZPR1-type (InterPro:IPR004457); BEST Arabidopsis thaliana protein match is: zinc finger (ZPR1-type) family protein (TAIR:AT5G37340.1); Has 854 Blast hits to 446 proteins in 195 species: Archae - 202; Bacteria - 0; Metazoa - 202; Fungi - 182; Plants - 28; Viruses - 0; Other Eukaryotes - 240 (source: NCBI BLink).  protein_id AT5G22480.1p  transcript_id AT5G22480.1  protein_id AT5G22480.1p  transcript_id AT5G22480.1  
At5g22490	chr5:007460864	0.0	C/7460864-7461049,7460165-7460734,7459959-7460025,7459746-7459858,7459424-7459633,7459208-7459345,7458943-7459107	AT5G22490.1  CDS  gene_syn MQJ16.3, MQJ16_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product condensation domain-containing protein  note condensation domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1298 (InterPro:IPR009721), Uncharacterised protein family UPF0089 (InterPro:IPR004255); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12420.1); Has 687 Blast hits to 676 proteins in 97 species: Archae - 4; Bacteria - 536; Metazoa - 13; Fungi - 2; Plants - 110; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT5G22490.1p  transcript_id AT5G22490.1  protein_id AT5G22490.1p  transcript_id AT5G22490.1  
At5g22500	chr5:007470541	0.0	W/7470541-7470616,7471311-7471414,7471541-7471746,7471847-7471947,7472027-7472213,7472300-7472461,7472555-7472636,7472804-7473073,7473436-7473563,7473757-7473916	AT5G22500.1  CDS  gene_syn FAR1, FATTY ACID REDUCTASE 1, MQJ16.4, MQJ16_4  gene FAR1  go_component chloroplast|GO:0009507|18431481|IDA  go_process metabolic process|GO:0008152||IEA  go_process microsporogenesis|GO:0009556||ISS  go_function oxidoreductase activity, acting on the CH-CH group of donors|GO:0016627||ISS  go_function fatty acyl-CoA reductase (alcohol-forming) activity|GO:0080019|19062129|IDA  product FAR1 (FATTY ACID REDUCTASE 1); fatty acyl-CoA reductase (alcohol-forming)/ oxidoreductase, acting on the CH-CH group of donors  note FATTY ACID REDUCTASE 1 (FAR1); FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors, fatty acyl-CoA reductase (alcohol-forming) activity; INVOLVED IN: microsporogenesis, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Male sterility (InterPro:IPR004262), NAD(P)-binding (InterPro:IPR016040), Male sterility, NAD-binding (InterPro:IPR013120); BEST Arabidopsis thaliana protein match is: FAR4 (FATTY ACID REDUCTASE 4); binding / catalytic/ oxidoreductase, acting on the CH-CH group of donors (TAIR:AT3G44540.1); Has 1821 Blast hits to 1792 proteins in 332 species: Archae - 0; Bacteria - 455; Metazoa - 873; Fungi - 189; Plants - 136; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).  protein_id AT5G22500.1p  transcript_id AT5G22500.1  protein_id AT5G22500.1p  transcript_id AT5G22500.1  
At5g22510	chr5:007476874	0.0	C/7476874-7477479,7476523-7476688,7476228-7476439,7475650-7476143,7475496-7475544,7474974-7475300	AT5G22510.1  CDS  gene_syn MQJ16.5, MQJ16_5  go_component chloroplast|GO:0009507|18431481|IDA  go_function catalytic activity|GO:0003824||IEA  go_process biological_process|GO:0008150||ND  go_function beta-fructofuranosidase activity|GO:0004564||ISS  product beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative  note beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative; FUNCTIONS IN: catalytic activity, beta-fructofuranosidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plant neutral invertase (InterPro:IPR006937), Six-hairpin glycosidase-like (InterPro:IPR008928); BEST Arabidopsis thaliana protein match is: beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative (TAIR:AT1G56560.1); Has 513 Blast hits to 512 proteins in 79 species: Archae - 0; Bacteria - 110; Metazoa - 0; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 230 (source: NCBI BLink).  protein_id AT5G22510.1p  transcript_id AT5G22510.1  protein_id AT5G22510.1p  transcript_id AT5G22510.1  
At5g22520	chr5:007479009	0.0	W/7479009-7479329	AT5G22520.1  CDS  gene_syn MQJ16.6, MQJ16_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22530.1); Has 10 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G22520.1p  transcript_id AT5G22520.1  protein_id AT5G22520.1p  transcript_id AT5G22520.1  
At5g22530	chr5:007480624	0.0	W/7480624-7481043	AT5G22530.1  CDS  gene_syn MQJ16.7, MQJ16_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.10 ten leaves visible, LP.02 two leaves visible, LP.08 eight leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22520.1); Has 12 Blast hits to 12 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G22530.1p  transcript_id AT5G22530.1  protein_id AT5G22530.1p  transcript_id AT5G22530.1  
At5g22540	chr5:007481546	0.0	C/7481546-7482868	AT5G22540.1  CDS  gene_syn MQJ16.8, MQJ16_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22550.2); Has 501 Blast hits to 453 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 501; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G22540.1p  transcript_id AT5G22540.1  protein_id AT5G22540.1p  transcript_id AT5G22540.1  
At5g22545	chr5:007483306	0.0	W/7483306-7483641	AT5G22545.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22520.1); Has 10 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G22545.1p  transcript_id AT5G22545.1  protein_id AT5G22545.1p  transcript_id AT5G22545.1  
At5g22550	chr5:007483955	0.0	C/7483955-7485433	AT5G22550.2  CDS  gene_syn MQJ16.9, MQJ16_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22560.1); Has 513 Blast hits to 443 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 513; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G22550.2p  transcript_id AT5G22550.2  protein_id AT5G22550.2p  transcript_id AT5G22550.2  
At5g22550	chr5:007485130	0.0	C/7485130-7485433,7483955-7484982	AT5G22550.1  CDS  gene_syn MQJ16.9, MQJ16_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22560.1); Has 448 Blast hits to 411 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 448; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G22550.1p  transcript_id AT5G22550.1  protein_id AT5G22550.1p  transcript_id AT5G22550.1  
At5g22555	chr5:007489450	0.0	W/7489450-7489552,7489783-7489848,7490178-7490296	AT5G22555.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G22555.1p  transcript_id AT5G22555.1  protein_id AT5G22555.1p  transcript_id AT5G22555.1  
At5g22560	chr5:007491544	0.0	C/7491544-7493097	AT5G22560.1  CDS  gene_syn MQJ16.10, MQJ16_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22550.2); Has 627 Blast hits to 518 proteins in 39 species: Archae - 0; Bacteria - 4; Metazoa - 11; Fungi - 4; Plants - 582; Viruses - 12; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT5G22560.1p  transcript_id AT5G22560.1  protein_id AT5G22560.1p  transcript_id AT5G22560.1  
At5g22570	chr5:007496442	0.0	C/7496442-7496707,7496176-7496298,7495608-7496088	AT5G22570.1  CDS  gene_syn AtWRKY38, MQJ16.11, MQJ16_11, WRKY38  gene WRKY38  function member of WRKY Transcription Factor; Group III  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_process salicylic acid mediated signaling pathway|GO:0009863|18776063|IMP  go_process defense response to bacterium|GO:0042742|18776063|IMP  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|17096590|IMP  go_function transcription factor activity|GO:0003700||ISS  product WRKY38; transcription factor  note WRKY38; FUNCTIONS IN: transcription factor activity; INVOLVED IN: defense response to bacterium, salicylic acid mediated signaling pathway, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY62; transcription factor (TAIR:AT5G01900.1); Has 1867 Blast hits to 1601 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1854; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT5G22570.1p  transcript_id AT5G22570.1  protein_id AT5G22570.1p  transcript_id AT5G22570.1  
At5g22580	chr5:007502709	0.0	W/7502709-7502833,7502927-7503137	AT5G22580.1  CDS  gene_syn MQJ16.12, MQJ16_12  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Stress responsive alpha-beta barrel (InterPro:IPR013097), Dimeric alpha-beta barrel (InterPro:IPR011008); BEST Arabidopsis thaliana protein match is: HS1 (HEAT STABLE PROTEIN 1) (TAIR:AT3G17210.1); Has 231 Blast hits to 231 proteins in 57 species: Archae - 0; Bacteria - 89; Metazoa - 0; Fungi - 4; Plants - 98; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT5G22580.1p  transcript_id AT5G22580.1  protein_id AT5G22580.1p  transcript_id AT5G22580.1  
At5g22590	chr5:007504536	0.0	W/7504536-7504565,7504704-7504936,7505086-7505551,7505653-7505838	AT5G22590.1  CDS  gene_syn MDJ22.1, MDJ22_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G22730.1); Has 308 Blast hits to 302 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 308; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G22590.1p  transcript_id AT5G22590.1  protein_id AT5G22590.1p  transcript_id AT5G22590.1  
At5g22600	chr5:007510438	0.0	W/7510438-7510980,7511072-7511221,7511324-7511632	AT5G22600.1  CDS  gene_syn MDJ22.2, MDJ22_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G22610.1); Has 491 Blast hits to 482 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 483; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G22600.1p  transcript_id AT5G22600.1  protein_id AT5G22600.1p  transcript_id AT5G22600.1  
At5g22608	chr5:007513207	0.0	W/7513207-7513319,7513919-7514072	AT5G22608.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G05185.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G22608.1p  transcript_id AT5G22608.1  protein_id AT5G22608.1p  transcript_id AT5G22608.1  
At5g22610	chr5:007515217	0.0	W/7515217-7515851,7515942-7516179,7516273-7516422,7516521-7516916	AT5G22610.1  CDS  gene_syn MDJ22.3, MDJ22_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G22730.1); Has 1377 Blast hits to 1348 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1376; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G22610.1p  transcript_id AT5G22610.1  protein_id AT5G22610.1p  transcript_id AT5G22610.1  
At5g22620	chr5:007519922	0.0	C/7519922-7520223,7519587-7519692,7519277-7519493,7519063-7519181,7518811-7518903,7518569-7518634,7518373-7518471,7518146-7518253,7517731-7518069	AT5G22620.1  CDS  gene_syn MDJ22.4, MDJ22_4  go_component chloroplast|GO:0009507||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_process metabolic process|GO:0008152||ISS  go_function catalytic activity|GO:0003824||ISS  product phosphoglycerate/bisphosphoglycerate mutase family protein  note phosphoglycerate/bisphosphoglycerate mutase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078), Phosphoglycerate/bisphosphoglycerate mutase (InterPro:IPR001345); Has 7256 Blast hits to 7163 proteins in 1237 species: Archae - 46; Bacteria - 4441; Metazoa - 577; Fungi - 226; Plants - 90; Viruses - 0; Other Eukaryotes - 1876 (source: NCBI BLink).  protein_id AT5G22620.1p  transcript_id AT5G22620.1  protein_id AT5G22620.1p  transcript_id AT5G22620.1  
At5g22620	chr5:007519922	0.0	C/7519922-7520223,7519587-7519692,7519277-7519493,7519063-7519181,7518811-7518903,7518569-7518634,7518373-7518471,7518146-7518253,7517731-7518069	AT5G22620.2  CDS  gene_syn MDJ22.4, MDJ22_4  go_component chloroplast|GO:0009507||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_process metabolic process|GO:0008152||ISS  go_function catalytic activity|GO:0003824||ISS  product phosphoglycerate/bisphosphoglycerate mutase family protein  note phosphoglycerate/bisphosphoglycerate mutase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078), Phosphoglycerate/bisphosphoglycerate mutase (InterPro:IPR001345).  protein_id AT5G22620.2p  transcript_id AT5G22620.2  protein_id AT5G22620.2p  transcript_id AT5G22620.2  
At5g22630	chr5:007524645	0.0	W/7524645-7525922	AT5G22630.1  CDS  gene_syn ADT5, MDJ22.5, MDJ22_5, arogenate dehydratase 5  gene ADT5  function Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identi& 64257;ed in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250].  go_process L-phenylalanine biosynthetic process|GO:0009094||IEA  go_component chloroplast|GO:0009507|19136569|IDA  go_process L-phenylalanine biosynthetic process|GO:0009094||ISS  go_function prephenate dehydratase activity|GO:0004664||ISS  go_function arogenate dehydratase activity|GO:0047769|17726025|IDA  product ADT5 (arogenate dehydratase 5); arogenate dehydratase/ prephenate dehydratase  note arogenate dehydratase 5 (ADT5); FUNCTIONS IN: arogenate dehydratase activity, prephenate dehydratase activity; INVOLVED IN: L-phenylalanine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prephenate dehydratase (InterPro:IPR001086), Prephenate dehydratase, conserved site (InterPro:IPR018528); BEST Arabidopsis thaliana protein match is: ADT4 (arogenate dehydratase 4); arogenate dehydratase/ prephenate dehydratase (TAIR:AT3G44720.1); Has 4933 Blast hits to 4932 proteins in 1199 species: Archae - 120; Bacteria - 2080; Metazoa - 2; Fungi - 72; Plants - 135; Viruses - 0; Other Eukaryotes - 2524 (source: NCBI BLink).  protein_id AT5G22630.1p  transcript_id AT5G22630.1  protein_id AT5G22630.1p  transcript_id AT5G22630.1  
At5g22640	chr5:007529423	0.0	W/7529423-7530075,7530486-7530557,7530674-7530763,7530850-7531023,7531245-7531335,7531494-7531556,7531651-7531717,7531988-7532091,7532170-7532296,7532384-7533150,7533234-7533641	AT5G22640.1  CDS  gene_syn MDJ22.6, MDJ22_6, emb1211, embryo defective 1211  gene emb1211  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process embryonic development ending in seed dormancy|GO:0009793|15266054|IMP  go_function molecular_function|GO:0003674||ND  product emb1211 (embryo defective 1211)  note embryo defective 1211 (emb1211); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MORN motif (InterPro:IPR003409); Has 20090 Blast hits to 11448 proteins in 643 species: Archae - 30; Bacteria - 1497; Metazoa - 7184; Fungi - 2271; Plants - 998; Viruses - 319; Other Eukaryotes - 7791 (source: NCBI BLink).  protein_id AT5G22640.1p  transcript_id AT5G22640.1  protein_id AT5G22640.1p  transcript_id AT5G22640.1  
At5g22650	chr5:007534120	0.0	W/7534120-7534132,7534393-7534463,7534554-7534762,7534893-7534972,7535058-7535209,7535324-7535404,7535505-7535613,7535755-7535881,7535976-7536054	AT5G22650.1  CDS  gene_syn ATHD2B, HD2, HD2B, HDA4, HDT02, HDT2, HISTONE DEACETYLASE, HISTONE DEACETYLASE 2B, MDJ22.7, MDJ22_7  gene HD2B  function Encodes a member of a plant-specific class of histone deacetylases. Controls the development of adaxial/abaxial leaf polarity. Its mRNA is widely expressed in stems, leaves, flowers and young siliques. Plant lines expressing RNAi constructs directed against this gene showed a marked reduction in agrobacterium-mediated root transformation.  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component nucleolus|GO:0005730|17293570|TAS  go_component cytosol|GO:0005829|18433157|IDA  go_process DNA mediated transformation|GO:0009294|17827277|IMP  go_process polarity specification of adaxial/abaxial axis|GO:0009944|17293570|IMP  go_process negative regulation of transcription|GO:0016481|12694598|IDA  go_function histone deacetylase activity|GO:0004407|10792817|ISS  go_function histone deacetylase activity|GO:0004407|12466527|ISS  product HD2B (HISTONE DEACETYLASE 2B); histone deacetylase  note HISTONE DEACETYLASE 2B (HD2B); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: DNA mediated transformation, negative regulation of transcription, polarity specification of adaxial/abaxial axis; LOCATED IN: cytosol, nucleolus, cell wall, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: HDA3 (HISTONE DEACETYLASE 3); histone deacetylase/ nucleic acid binding / zinc ion binding (TAIR:AT3G44750.1); Has 65328 Blast hits to 30534 proteins in 1296 species: Archae - 165; Bacteria - 13693; Metazoa - 24403; Fungi - 8136; Plants - 2499; Viruses - 750; Other Eukaryotes - 15682 (source: NCBI BLink).  protein_id AT5G22650.1p  transcript_id AT5G22650.1  protein_id AT5G22650.1p  transcript_id AT5G22650.1  
At5g22650	chr5:007534120	0.0	W/7534120-7534132,7534393-7534463,7534554-7534762,7534893-7534972,7535058-7535209,7535324-7535404,7535505-7535613,7535758-7535881,7535976-7536054	AT5G22650.2  CDS  gene_syn ATHD2B, HD2, HD2B, HDA4, HDT02, HDT2, HISTONE DEACETYLASE, HISTONE DEACETYLASE 2B, MDJ22.7, MDJ22_7  gene HD2B  function Encodes a member of a plant-specific class of histone deacetylases. Controls the development of adaxial/abaxial leaf polarity. Its mRNA is widely expressed in stems, leaves, flowers and young siliques. Plant lines expressing RNAi constructs directed against this gene showed a marked reduction in agrobacterium-mediated root transformation.  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component nucleolus|GO:0005730|17293570|TAS  go_component cytosol|GO:0005829|18433157|IDA  go_process DNA mediated transformation|GO:0009294|17827277|IMP  go_process polarity specification of adaxial/abaxial axis|GO:0009944|17293570|IMP  go_process negative regulation of transcription|GO:0016481|12694598|IDA  go_function histone deacetylase activity|GO:0004407|10792817|ISS  go_function histone deacetylase activity|GO:0004407|12466527|ISS  product HD2B (HISTONE DEACETYLASE 2B); histone deacetylase  note HISTONE DEACETYLASE 2B (HD2B); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: DNA mediated transformation, negative regulation of transcription, polarity specification of adaxial/abaxial axis; LOCATED IN: cytosol, nucleolus, cell wall, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: HDA3 (HISTONE DEACETYLASE 3); histone deacetylase/ nucleic acid binding / zinc ion binding (TAIR:AT3G44750.1); Has 62820 Blast hits to 29881 proteins in 1267 species: Archae - 170; Bacteria - 11819; Metazoa - 23924; Fungi - 7886; Plants - 2475; Viruses - 782; Other Eukaryotes - 15764 (source: NCBI BLink).  protein_id AT5G22650.2p  transcript_id AT5G22650.2  protein_id AT5G22650.2p  transcript_id AT5G22650.2  
At5g22660	chr5:007536906	0.0	C/7536906-7537853	AT5G22660.1  CDS  gene_syn MDJ22.8, MDJ22_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G22700.1); Has 1410 Blast hits to 1385 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1410; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G22660.1p  transcript_id AT5G22660.1  protein_id AT5G22660.1p  transcript_id AT5G22660.1  
At5g22660	chr5:007536930	0.0	C/7536930-7537853,7536706-7536846,7536328-7536615	AT5G22660.2  CDS  gene_syn MDJ22.8, MDJ22_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G22700.1); Has 1454 Blast hits to 1423 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1453; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G22660.2p  transcript_id AT5G22660.2  protein_id AT5G22660.2p  transcript_id AT5G22660.2  
At5g22670	chr5:007538774	0.0	C/7538774-7539685,7538554-7538694,7538192-7538470	AT5G22670.1  CDS  gene_syn MDJ22.9, MDJ22_9  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G22660.2); Has 1437 Blast hits to 1401 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1436; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G22670.1p  transcript_id AT5G22670.1  protein_id AT5G22670.1p  transcript_id AT5G22670.1  
At5g22680	chr5:007540041	0.0	C/7540041-7540748	AT5G22680.1  CDS  gene_syn MDJ22.10, MDJ22_10  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G22720.1); Has 44 Blast hits to 43 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G22680.1p  transcript_id AT5G22680.1  protein_id AT5G22680.1p  transcript_id AT5G22680.1  
At5g22690	chr5:007541369	0.0	W/7541369-7541829,7541904-7543026,7543107-7543415,7543639-7544694,7544811-7544888	AT5G22690.1  CDS  gene_syn MDJ22.11, MDJ22_11  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: protein binding, transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G46470.1); Has 11710 Blast hits to 8495 proteins in 293 species: Archae - 12; Bacteria - 380; Metazoa - 722; Fungi - 5; Plants - 10309; Viruses - 0; Other Eukaryotes - 282 (source: NCBI BLink).  protein_id AT5G22690.1p  transcript_id AT5G22690.1  protein_id AT5G22690.1p  transcript_id AT5G22690.1  
At5g22700	chr5:007546405	0.0	C/7546405-7547307,7546189-7546329,7545653-7545922	AT5G22700.1  CDS  gene_syn MDJ22.12, MDJ22_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G22660.2); Has 1427 Blast hits to 1398 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1426; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G22700.1p  transcript_id AT5G22700.1  protein_id AT5G22700.1p  transcript_id AT5G22700.1  
At5g22710	chr5:007548704	0.0	C/7548704-7548889,7548443-7548580,7548207-7548347,7547797-7548120	AT5G22710.1  CDS  gene_syn MDJ22.13, MDJ22_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G22670.1); Has 161 Blast hits to 157 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 161; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G22710.1p  transcript_id AT5G22710.1  protein_id AT5G22710.1p  transcript_id AT5G22710.1  
At5g22720	chr5:007550218	0.0	C/7550218-7551174,7549565-7549876	AT5G22720.1  CDS  gene_syn MDJ22.14, MDJ22_14  go_component cellular_component|GO:0005575||ND  product F-box family protein  note F-box family protein; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G22730.1); Has 1375 Blast hits to 1345 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 1368; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G22720.1p  transcript_id AT5G22720.1  protein_id AT5G22720.1p  transcript_id AT5G22720.1  
At5g22730	chr5:007552236	0.0	C/7552236-7553219,7552010-7552156,7551632-7551901	AT5G22730.1  CDS  gene_syn MDJ22.15, MDJ22_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G22610.1); Has 1339 Blast hits to 1309 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1339; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G22730.1p  transcript_id AT5G22730.1  protein_id AT5G22730.1p  transcript_id AT5G22730.1  
At5g22740	chr5:007559537	0.0	C/7559537-7559866,7559118-7559216,7558634-7558886,7557297-7557407,7556572-7556708,7556220-7556333,7555939-7556138,7555626-7555826,7555379-7555538	AT5G22740.1  CDS  gene_syn ATCSLA02, ATCSLA2, CELLULOSE SYNTHASE-LIKE A2, CSLA02, MDJ22.16, MDJ22_16  gene ATCSLA02  function encodes a beta-mannan synthase based on in vitro enzyme assays from heterologously expressed protein  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function mannan synthase activity|GO:0051753|15647349|IDA  product ATCSLA02; mannan synthase/ transferase, transferring glycosyl groups  note ATCSLA02; FUNCTIONS IN: transferase activity, transferring glycosyl groups, mannan synthase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: ATCSLA09; mannan synthase/ transferase, transferring glycosyl groups (TAIR:AT5G03760.1); Has 3024 Blast hits to 3019 proteins in 818 species: Archae - 107; Bacteria - 2215; Metazoa - 37; Fungi - 70; Plants - 295; Viruses - 11; Other Eukaryotes - 289 (source: NCBI BLink).  protein_id AT5G22740.1p  transcript_id AT5G22740.1  protein_id AT5G22740.1p  transcript_id AT5G22740.1  
At5g22750	chr5:007570335	0.0	C/7570335-7570871,7570118-7570251,7569893-7570028,7569698-7569751,7569465-7569611,7569227-7569378,7569066-7569150,7568686-7568955,7568423-7568569,7568160-7568315,7567718-7567785,7567502-7567624,7567293-7567392,7567098-7567210,7566591-7566869,7566279-7566479,7566102-7566195,7565936-7566007,7565634-7565732,7565374-7565496	AT5G22750.1  CDS  gene_syn MDJ22.17, MDJ22_17, RAD5  gene RAD5  function DNA repair gene. gamma-radiation hypersensitive (RAD5) involved in stable transformation and T-DNA transfer  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides|GO:0016818||IEA  go_process DNA mediated transformation|GO:0009294|9805401|IMP  go_function DNA binding|GO:0003677||ISS  go_function helicase activity|GO:0004386||ISS  go_function protein binding|GO:0005515||ISS  go_function ATP binding|GO:0005524||ISS  go_function zinc ion binding|GO:0008270||ISS  product RAD5; ATP binding / ATP-dependent helicase/ DNA binding / helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding / protein binding / zinc ion binding  note RAD5; FUNCTIONS IN: in 8 functions; INVOLVED IN: DNA mediated transformation; EXPRESSED IN: sperm cell, embryo, seed; EXPRESSED DURING: D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), SNF2-related (InterPro:IPR000330), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), HIP116, Rad5p N-terminal (InterPro:IPR014905); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein (TAIR:AT5G43530.1); Has 18762 Blast hits to 12976 proteins in 994 species: Archae - 73; Bacteria - 3617; Metazoa - 7084; Fungi - 3328; Plants - 1242; Viruses - 151; Other Eukaryotes - 3267 (source: NCBI BLink).  protein_id AT5G22750.1p  transcript_id AT5G22750.1  protein_id AT5G22750.1p  transcript_id AT5G22750.1  
At5g22760	chr5:007571635	0.0	W/7571635-7572413,7572794-7573501,7573711-7574632,7574830-7575109,7575265-7575389,7575479-7575948,7576042-7576070,7576175-7576657,7576758-7577662	AT5G22760.1  CDS  gene_syn MDJ22.18, MDJ22_18  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product PHD finger family protein  note PHD finger family protein; FUNCTIONS IN: protein binding, DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DDT family (InterPro:IPR004022), EF-HAND 1 (InterPro:IPR018247), Zinc finger, PHD-type (InterPro:IPR001965), DDT superfamily (InterPro:IPR018501), DDT subgroup (InterPro:IPR018500), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: peptidase M50 family protein / sterol-regulatory element binding protein (SREBP) site 2 protease family protein (TAIR:AT5G35210.2); Has 2746 Blast hits to 2436 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 2030; Fungi - 259; Plants - 275; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink).  protein_id AT5G22760.1p  transcript_id AT5G22760.1  protein_id AT5G22760.1p  transcript_id AT5G22760.1  
At5g22770	chr5:007587901	0.0	C/7587901-7588026,7587027-7587158,7586550-7586675,7586274-7586336,7586094-7586191,7585806-7586013,7585536-7585607,7585363-7585455,7584873-7584974,7584676-7584773,7584048-7584129,7583826-7583914,7583578-7583683,7583429-7583494,7582846-7582952,7582660-7582764,7582430-7582550,7582165-7582329,7581811-7582044,7581440-7581520,7581171-7581335,7580980-7581066,7580777-7580902,7580488-7580568,7580330-7580401,7580090-7580169,7579844-7579997	AT5G22770.1  CDS  gene_syn MDJ22.19, MDJ22_19, alpha-ADR, alpha-adaptin  gene alpha-ADR  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process intracellular protein transport|GO:0006886||IEA  go_process protein transport|GO:0015031||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function protein transporter activity|GO:0008565||IEA  product alpha-ADR (alpha-adaptin); binding / protein binding / protein transporter  note alpha-adaptin (alpha-ADR); FUNCTIONS IN: protein transporter activity, protein binding, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: male gametophyte, pollen tube, leaf; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain (InterPro:IPR008152), Adaptor protein complex AP-2, alpha subunit (InterPro:IPR017104), Armadillo-like helical (InterPro:IPR011989), Clathrin adaptor, alpha-adaptin, appendage, Ig-like subdomain (InterPro:IPR013038), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553), Clathrin adaptor, alpha-adaptin, appendage, C-terminal subdomain (InterPro:IPR003164), Armadillo-type fold (InterPro:IPR016024), Clathrin alpha-adaptin/coatomer adaptor, appendage, C-terminal subdomain (InterPro:IPR015873), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028), Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain (InterPro:IPR013041); BEST Arabidopsis thaliana protein match is: adaptin family protein (TAIR:AT5G22780.1); Has 1856 Blast hits to 1816 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 803; Fungi - 445; Plants - 132; Viruses - 0; Other Eukaryotes - 476 (source: NCBI BLink).  protein_id AT5G22770.1p  transcript_id AT5G22770.1  protein_id AT5G22770.1p  transcript_id AT5G22770.1  
At5g22770	chr5:007587901	0.0	C/7587901-7588026,7587027-7587158,7586550-7586675,7586274-7586336,7586094-7586191,7585806-7586013,7585536-7585607,7585363-7585455,7584873-7584974,7584676-7584773,7584048-7584129,7583826-7583914,7583578-7583683,7583429-7583494,7582846-7582952,7582660-7582764,7582430-7582550,7582165-7582329,7581811-7582044,7581440-7581520,7581171-7581335,7580980-7581066,7580777-7580902,7580488-7580568,7580330-7580401,7580090-7580169,7579844-7579997	AT5G22770.2  CDS  gene_syn MDJ22.19, MDJ22_19, alpha-ADR, alpha-adaptin  gene alpha-ADR  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process intracellular protein transport|GO:0006886||IEA  go_process protein transport|GO:0015031||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function protein transporter activity|GO:0008565||IEA  product alpha-ADR (alpha-adaptin); binding / protein binding / protein transporter  note alpha-adaptin (alpha-ADR); FUNCTIONS IN: protein transporter activity, protein binding, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: male gametophyte, pollen tube, leaf; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain (InterPro:IPR008152), Adaptor protein complex AP-2, alpha subunit (InterPro:IPR017104), Armadillo-like helical (InterPro:IPR011989), Clathrin adaptor, alpha-adaptin, appendage, Ig-like subdomain (InterPro:IPR013038), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553), Clathrin adaptor, alpha-adaptin, appendage, C-terminal subdomain (InterPro:IPR003164), Armadillo-type fold (InterPro:IPR016024), Clathrin alpha-adaptin/coatomer adaptor, appendage, C-terminal subdomain (InterPro:IPR015873), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028), Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain (InterPro:IPR013041); BEST Arabidopsis thaliana protein match is: adaptin family protein (TAIR:AT5G22780.1); Has 1856 Blast hits to 1816 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 803; Fungi - 445; Plants - 132; Viruses - 0; Other Eukaryotes - 476 (source: NCBI BLink).  protein_id AT5G22770.2p  transcript_id AT5G22770.2  protein_id AT5G22770.2p  transcript_id AT5G22770.2  
At5g22770	chr5:007587901	0.0	C/7587901-7588026,7587027-7587158,7586550-7586675,7586274-7586336,7586094-7586191,7585806-7586013,7585536-7585607,7585363-7585455,7584873-7584974,7584676-7584773,7584048-7584129,7583826-7583914,7583578-7583683,7583429-7583494,7582846-7582952,7582660-7582764,7582430-7582550,7582165-7582329,7581811-7582044,7581440-7581520,7581171-7581335,7580980-7581066,7580777-7580902,7580488-7580568,7580330-7580401,7580090-7580169,7579844-7579997	AT5G22770.3  CDS  gene_syn MDJ22.19, MDJ22_19, alpha-ADR, alpha-adaptin  gene alpha-ADR  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process intracellular protein transport|GO:0006886||IEA  go_process protein transport|GO:0015031||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function protein transporter activity|GO:0008565||IEA  product alpha-ADR (alpha-adaptin); binding / protein binding / protein transporter  note alpha-adaptin (alpha-ADR); FUNCTIONS IN: protein transporter activity, protein binding, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: male gametophyte, pollen tube, leaf; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain (InterPro:IPR008152), Adaptor protein complex AP-2, alpha subunit (InterPro:IPR017104), Armadillo-like helical (InterPro:IPR011989), Clathrin adaptor, alpha-adaptin, appendage, Ig-like subdomain (InterPro:IPR013038), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553), Clathrin adaptor, alpha-adaptin, appendage, C-terminal subdomain (InterPro:IPR003164), Armadillo-type fold (InterPro:IPR016024), Clathrin alpha-adaptin/coatomer adaptor, appendage, C-terminal subdomain (InterPro:IPR015873), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028), Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain (InterPro:IPR013041); BEST Arabidopsis thaliana protein match is: adaptin family protein (TAIR:AT5G22780.1); Has 1856 Blast hits to 1816 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 803; Fungi - 445; Plants - 132; Viruses - 0; Other Eukaryotes - 476 (source: NCBI BLink).  protein_id AT5G22770.3p  transcript_id AT5G22770.3  protein_id AT5G22770.3p  transcript_id AT5G22770.3  
At5g22780	chr5:007597703	0.0	C/7597703-7597828,7596793-7596924,7596295-7596420,7596017-7596079,7595834-7595931,7595545-7595752,7595308-7595379,7595141-7595233,7594797-7594898,7594586-7594683,7593933-7594014,7593743-7593831,7593515-7593620,7593365-7593430,7593086-7593192,7592900-7593004,7592670-7592790,7592405-7592569,7592051-7592284,7591668-7591748,7591400-7591564,7591209-7591295,7590996-7591121,7590696-7590776,7590538-7590609,7590343-7590422,7590100-7590256	AT5G22780.1  CDS  gene_syn K5A21.2, K5A21_2  go_component plasma membrane|GO:0005886|17644812|IDA  go_process intracellular protein transport|GO:0006886||IEA  go_process protein transport|GO:0015031||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function protein transporter activity|GO:0008565||IEA  product adaptin family protein  note adaptin family protein; FUNCTIONS IN: protein transporter activity, protein binding, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain (InterPro:IPR008152), Adaptor protein complex AP-2, alpha subunit (InterPro:IPR017104), Armadillo-like helical (InterPro:IPR011989), Clathrin adaptor, alpha-adaptin, appendage, Ig-like subdomain (InterPro:IPR013038), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553), Clathrin adaptor, alpha-adaptin, appendage, C-terminal subdomain (InterPro:IPR003164), Armadillo-type fold (InterPro:IPR016024), Clathrin alpha-adaptin/coatomer adaptor, appendage, C-terminal subdomain (InterPro:IPR015873), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028), Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain (InterPro:IPR013041); BEST Arabidopsis thaliana protein match is: alpha-ADR (alpha-adaptin); binding / protein binding / protein transporter (TAIR:AT5G22770.3); Has 1862 Blast hits to 1818 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 809; Fungi - 445; Plants - 132; Viruses - 0; Other Eukaryotes - 476 (source: NCBI BLink).  protein_id AT5G22780.1p  transcript_id AT5G22780.1  protein_id AT5G22780.1p  transcript_id AT5G22780.1  
At5g22790	chr5:007601004	0.0	C/7601004-7601573,7600830-7600928,7600520-7600743,7600316-7600385,7600152-7600231,7599977-7600041,7599395-7599588	AT5G22790.1  CDS  gene_syn K8E10.2, K8E10_2, RER1, RETICULATA-RELATED 1  gene RER1  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_component chloroplast inner membrane|GO:0009706|12766230|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product RER1 (RETICULATA-RELATED 1)  note RETICULATA-RELATED 1 (RER1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: LCD1 (LOWER CELL DENSITY 1) (TAIR:AT2G37860.3); Has 3747 Blast hits to 1646 proteins in 237 species: Archae - 10; Bacteria - 594; Metazoa - 1288; Fungi - 337; Plants - 546; Viruses - 166; Other Eukaryotes - 806 (source: NCBI BLink).  protein_id AT5G22790.1p  transcript_id AT5G22790.1  protein_id AT5G22790.1p  transcript_id AT5G22790.1  
At5g22788	chr5:007602913	0.0	C/7602913-7603499	AT5G22788.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G22788.1  
At5g22791	chr5:007603579	0.0	C/7603579-7604250	AT5G22791.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G43550.1); Has 273 Blast hits to 269 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 273; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G22791.1p  transcript_id AT5G22791.1  protein_id AT5G22791.1p  transcript_id AT5G22791.1  
At5g22791	chr5:007604331	0.0	C/7604331-7604771,7603579-7604205	AT5G22791.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G30790.1).  protein_id AT5G22791.2p  transcript_id AT5G22791.2  protein_id AT5G22791.2p  transcript_id AT5G22791.2  
At5g22792	chr5:007606735	0.0	C/7606735-7607667	AT5G22792.1  pseudogenic_transcript  pseudo  function pseudogene of F-box family protein  
At5g22794	chr5:007608242	0.0	W/7608242-7608356,7608720-7608813,7609909-7609933,7610049-7610204,7610297-7610349,7610483-7610613,7611473-7611591	AT5G22794.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: male sterility MS5 family protein (TAIR:AT1G04770.1).  protein_id AT5G22794.1p  transcript_id AT5G22794.1  protein_id AT5G22794.1p  transcript_id AT5G22794.1  
At5g22794	chr5:007608242	0.0	W/7608242-7608356,7608720-7608813,7609909-7609954,7610049-7610204,7610297-7610349,7610483-7610613,7611473-7611591	AT5G22794.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: male sterility MS5 family protein (TAIR:AT1G04770.1).  protein_id AT5G22794.2p  transcript_id AT5G22794.2  protein_id AT5G22794.2p  transcript_id AT5G22794.2  
At5g22800	chr5:007619877	0.0	C/7619877-7619961,7619539-7619631,7619231-7619436,7617555-7619126,7617194-7617469,7616894-7617103,7616641-7616798,7616221-7616557	AT5G22800.1  CDS  gene_syn EMB1030, EMBRYO DEFECTIVE 1030  gene EMB1030  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function alanine-tRNA ligase activity|GO:0004813||IEA  go_function ATP binding|GO:0005524||IEA  go_function ligase activity, forming aminoacyl-tRNA and related compounds|GO:0016876||IEA  go_component mitochondrion|GO:0005739|16251277|IDA  go_component chloroplast|GO:0009507|16251277|IDA  go_process alanyl-tRNA aminoacylation|GO:0006419||ISS  go_process embryonic development ending in seed dormancy|GO:0009793|16297076|IMP  product EMB1030 (EMBRYO DEFECTIVE 1030); ATP binding / alanine-tRNA ligase/ ligase, forming aminoacyl-tRNA and related compounds / nucleic acid binding / nucleotide binding  note EMBRYO DEFECTIVE 1030 (EMB1030); FUNCTIONS IN: alanine-tRNA ligase activity, ligase activity, forming aminoacyl-tRNA and related compounds, nucleotide binding, ATP binding, nucleic acid binding; INVOLVED IN: embryonic development ending in seed dormancy, alanyl-tRNA aminoacylation; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Threonyl/alanyl tRNA synthetase, SAD (InterPro:IPR012947), Alanyl-tRNA synthetase, class IIc, N-terminal (InterPro:IPR018164), Alanyl-tRNA synthetase, class IIc (InterPro:IPR002318), Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain (InterPro:IPR018163), Phosphoesterase, DHHA1 (InterPro:IPR003156), Alanyl-tRNA synthetase, class IIc, anti-codon-binding domain (InterPro:IPR018162), Alanyl-tRNA synthetase, class IIc, conserved region (InterPro:IPR018165); BEST Arabidopsis thaliana protein match is: ALATS (ALANYL-TRNA SYNTHETASE); ATP binding / alanine-tRNA ligase/ ligase, forming aminoacyl-tRNA and related compounds / nucleic acid binding / nucleotide binding (TAIR:AT1G50200.1); Has 11822 Blast hits to 11734 proteins in 1804 species: Archae - 284; Bacteria - 4252; Metazoa - 616; Fungi - 157; Plants - 70; Viruses - 0; Other Eukaryotes - 6443 (source: NCBI BLink).  protein_id AT5G22800.1p  transcript_id AT5G22800.1  protein_id AT5G22800.1p  transcript_id AT5G22800.1  
At5g22810	chr5:007621568	0.0	W/7621568-7621757,7622156-7622286,7622383-7622625,7622840-7623095,7623174-7623367	AT5G22810.1  CDS  gene_syn MRN17.4, MRN17_4  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298||ISS  product GDSL-motif lipase, putative  note GDSL-motif lipase, putative; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT5G03820.1); Has 1999 Blast hits to 1977 proteins in 227 species: Archae - 0; Bacteria - 369; Metazoa - 1; Fungi - 20; Plants - 1585; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT5G22810.1p  transcript_id AT5G22810.1  protein_id AT5G22810.1p  transcript_id AT5G22810.1  
At5g22820	chr5:007626818	0.0	C/7626818-7626943,7626284-7626628,7625951-7626016,7625703-7625842,7625487-7625613,7625112-7625263,7624845-7624980,7624682-7624766,7624113-7624408	AT5G22820.1  CDS  gene_syn MRN17.5, MRN17_5  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 69 Blast hits to 68 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 52; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G22820.1p  transcript_id AT5G22820.1  protein_id AT5G22820.1p  transcript_id AT5G22820.1  
At5g22830	chr5:007627676	0.0	W/7627676-7628068,7628210-7628282,7628369-7628439,7628537-7628622,7628703-7628793,7628968-7629036,7629365-7629445,7629555-7629720,7629807-7629852,7629930-7630010,7630086-7630168,7630418-7630461,7630538-7630633	AT5G22830.1  CDS  gene_syn ATMGT10, GMN10, MAGNESIUM (MG) TRANSPORTER 10, MRN17.6, MRN17_6  gene ATMGT10  function putative Mg(2+) transport protein  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020||ISS  go_process magnesium ion transport|GO:0015693|11752386|IGI  go_function magnesium ion transmembrane transporter activity|GO:0015095|11752386|IGI  product ATMGT10 (MAGNESIUM (MG) TRANSPORTER 10); magnesium ion transmembrane transporter  note MAGNESIUM (MG) TRANSPORTER 10 (ATMGT10); FUNCTIONS IN: magnesium ion transmembrane transporter activity; INVOLVED IN: magnesium ion transport; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mg2+ transporter protein, CorA-like (InterPro:IPR002523); BEST Arabidopsis thaliana protein match is: magnesium transporter CorA-like family protein (MRS2-7) (TAIR:AT5G09690.2); Has 468 Blast hits to 462 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 74; Fungi - 143; Plants - 183; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT5G22830.1p  transcript_id AT5G22830.1  protein_id AT5G22830.1p  transcript_id AT5G22830.1  
At5g22840	chr5:007632900	0.0	C/7632900-7633103,7631756-7632691,7631610-7631657,7631103-7631531	AT5G22840.1  CDS  gene_syn MRN17.7, MRN17_7  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase-related (TAIR:AT3G44850.1); Has 30632 Blast hits to 23585 proteins in 791 species: Archae - 4; Bacteria - 858; Metazoa - 13844; Fungi - 4830; Plants - 4193; Viruses - 23; Other Eukaryotes - 6880 (source: NCBI BLink).  protein_id AT5G22840.1p  transcript_id AT5G22840.1  protein_id AT5G22840.1p  transcript_id AT5G22840.1  
At5g22850	chr5:007636063	0.0	C/7636063-7636298,7635733-7635862,7635392-7635642,7635064-7635291,7634742-7634904,7634520-7634593,7634335-7634431,7634138-7634204,7633973-7634044,7633717-7633880	AT5G22850.1  CDS  gene_syn MRN17.8, MRN17_8  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT1G08210.1); Has 3460 Blast hits to 3446 proteins in 295 species: Archae - 0; Bacteria - 0; Metazoa - 1380; Fungi - 689; Plants - 1191; Viruses - 1; Other Eukaryotes - 199 (source: NCBI BLink).  protein_id AT5G22850.1p  transcript_id AT5G22850.1  protein_id AT5G22850.1p  transcript_id AT5G22850.1  
At5g22860	chr5:007642553	0.0	C/7642553-7642945,7642268-7642454,7641971-7642104,7641687-7641799,7641343-7641595,7640970-7641125,7639907-7639990	AT5G22860.2  CDS  gene_syn MRN17.9, MRN17_9  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type peptidase activity|GO:0008236||IEA  go_function peptidase activity|GO:0008233||ISS  product serine carboxypeptidase S28 family protein  note serine carboxypeptidase S28 family protein; FUNCTIONS IN: serine-type peptidase activity, peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S28 (InterPro:IPR008758); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase S28 family protein (TAIR:AT5G65760.1); Has 880 Blast hits to 856 proteins in 112 species: Archae - 0; Bacteria - 2; Metazoa - 509; Fungi - 127; Plants - 106; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).  protein_id AT5G22860.2p  transcript_id AT5G22860.2  protein_id AT5G22860.2p  transcript_id AT5G22860.2  
At5g22860	chr5:007642553	0.0	C/7642553-7642945,7642268-7642454,7641971-7642104,7641687-7641799,7641343-7641595,7640970-7641125,7639911-7639990,7639763-7639812,7639511-7639653	AT5G22860.1  CDS  gene_syn MRN17.9, MRN17_9  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type peptidase activity|GO:0008236||IEA  go_function peptidase activity|GO:0008233||ISS  product serine carboxypeptidase S28 family protein  note serine carboxypeptidase S28 family protein; FUNCTIONS IN: serine-type peptidase activity, peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S28 (InterPro:IPR008758); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase S28 family protein (TAIR:AT5G65760.1); Has 891 Blast hits to 867 proteins in 112 species: Archae - 0; Bacteria - 2; Metazoa - 514; Fungi - 129; Plants - 106; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink).  protein_id AT5G22860.1p  transcript_id AT5G22860.1  protein_id AT5G22860.1p  transcript_id AT5G22860.1  
At5g22870	chr5:007647056	0.0	C/7647056-7647679	AT5G22870.1  CDS  gene_syn MRN17.10, MRN17_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product harpin-induced protein-related / HIN1-related / harpin-responsive protein-related  note harpin-induced protein-related / HIN1-related / harpin-responsive protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: harpin-induced protein-related / HIN1-related / harpin-responsive protein-related (TAIR:AT1G08160.1); Has 625 Blast hits to 625 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 625; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G22870.1p  transcript_id AT5G22870.1  protein_id AT5G22870.1p  transcript_id AT5G22870.1  
At5g22875	chr5:007651307	0.0	W/7651307-7651389,7651477-7651603	AT5G22875.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 21 Blast hits to 21 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G22875.1p  transcript_id AT5G22875.1  protein_id AT5G22875.1p  transcript_id AT5G22875.1  
At5g22875	chr5:007651307	0.0	W/7651307-7651389,7651477-7651603	AT5G22875.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 21 Blast hits to 21 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G22875.2p  transcript_id AT5G22875.2  protein_id AT5G22875.2p  transcript_id AT5G22875.2  
At5g22880	chr5:007652130	0.0	C/7652130-7652567	AT5G22880.1  CDS  gene_syn H2B, HISTONE H2B, HTB2, MRN17.11, MRN17_11  gene HTB2  function Encodes a histone 2B (H2B) protein. This protein can be ubiquitinated in planta, and this modification depends on the HUB1 and HUB2 E3 ubiquitin ligases.  go_component nucleolus|GO:0005730|15496452|IDA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_component nucleus|GO:0005634|17662028|IDA  go_function DNA binding|GO:0003677||ISS  product HTB2; DNA binding  note HTB2; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: HTB1; DNA binding (TAIR:AT1G07790.1); Has 2800 Blast hits to 2752 proteins in 289 species: Archae - 0; Bacteria - 44; Metazoa - 1871; Fungi - 166; Plants - 364; Viruses - 0; Other Eukaryotes - 355 (source: NCBI BLink).  protein_id AT5G22880.1p  transcript_id AT5G22880.1  protein_id AT5G22880.1p  transcript_id AT5G22880.1  
At5g22890	chr5:007653541	0.0	C/7653541-7654662	AT5G22890.1  CDS  gene_syn MRN17.12, MRN17_12  go_component intracellular|GO:0005622||IEA  go_process response to chitin|GO:0010200|17722694|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to chitin, regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: STOP1 (sensitive to proton rhizotoxicity 1); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT1G34370.2); Has 27632 Blast hits to 13101 proteins in 174 species: Archae - 0; Bacteria - 0; Metazoa - 26443; Fungi - 25; Plants - 382; Viruses - 0; Other Eukaryotes - 782 (source: NCBI BLink).  protein_id AT5G22890.1p  transcript_id AT5G22890.1  protein_id AT5G22890.1p  transcript_id AT5G22890.1  
At5g22900	chr5:007657224	0.0	W/7657224-7657490,7657571-7658629,7658726-7659868	AT5G22900.1  CDS  gene_syn ATCHX3, CATION/H+ EXCHANGER 3, CHX3, MRN17.13, MRN17_13  gene ATCHX3  function member of Putative Na+/H+ antiporter family  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|IC  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  product ATCHX3; monovalent cation:proton antiporter  note ATCHX3; FUNCTIONS IN: monovalent cation:proton antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte, pollen tube; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: ATCHX4 (CATION/H+ EXCHANGER 4); monovalent cation:proton antiporter/ sodium:hydrogen antiporter (TAIR:AT3G44900.1); Has 1441 Blast hits to 1427 proteins in 546 species: Archae - 70; Bacteria - 986; Metazoa - 0; Fungi - 79; Plants - 262; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT5G22900.1p  transcript_id AT5G22900.1  protein_id AT5G22900.1p  transcript_id AT5G22900.1  
At5g22910	chr5:007663581	0.0	C/7663581-7663829,7663000-7663475,7662152-7662701,7660927-7662054	AT5G22910.1  CDS  gene_syn ATCHX9, CATION/H+ EXCHANGER 9, CHX9, MRN17.14, MRN17_14  gene ATCHX9  function member of Putative Na+/H+ antiporter family  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|IC  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product ATCHX9; monovalent cation:proton antiporter/ sodium:hydrogen antiporter  note ATCHX9; FUNCTIONS IN: monovalent cation:proton antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte, pollen tube; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: ATCHX10 (CATION/H+ EXCHANGER 10); monovalent cation:proton antiporter/ sodium:hydrogen antiporter (TAIR:AT3G44930.1); Has 2260 Blast hits to 2247 proteins in 695 species: Archae - 157; Bacteria - 1525; Metazoa - 0; Fungi - 81; Plants - 229; Viruses - 0; Other Eukaryotes - 268 (source: NCBI BLink).  protein_id AT5G22910.1p  transcript_id AT5G22910.1  protein_id AT5G22910.1p  transcript_id AT5G22910.1  
At5g22920	chr5:007665143	0.0	W/7665143-7665219,7665316-7665403,7665531-7665590,7665676-7665708,7665794-7665871,7665949-7665992,7666098-7666138,7666225-7666307,7666392-7666483,7666571-7666640,7666721-7666762,7666864-7667031	AT5G22920.1  CDS  gene_syn MRN17.15, MRN17_15  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CHY-type (InterPro:IPR008913), Zinc finger, CTCHY-type (InterPro:IPR017921), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G25560.1); Has 971 Blast hits to 931 proteins in 136 species: Archae - 2; Bacteria - 4; Metazoa - 593; Fungi - 96; Plants - 143; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).  protein_id AT5G22920.1p  transcript_id AT5G22920.1  protein_id AT5G22920.1p  transcript_id AT5G22920.1  
At5g22930	chr5:007669262	0.0	C/7669262-7669315,7668229-7668891	AT5G22930.1  CDS  gene_syn MRN17.16, MRN17_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1635 (InterPro:IPR012862); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44940.1); Has 41 Blast hits to 41 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G22930.1p  transcript_id AT5G22930.1  protein_id AT5G22930.1p  transcript_id AT5G22930.1  
At5g22940	chr5:007677197	0.0	W/7677197-7677506,7677594-7677958,7678047-7678297,7678409-7678892	AT5G22940.1  CDS  gene_syn F8H, FRA8 HOMOLOG, MRN17.17, MRN17_17  gene F8H  function Homolog of FRA8 (AT2G28110), a member of a member of glycosyltransferase family 47; exhibits high sequence similarity to tobacco (Nicotiana plumbaginifolia) pectin glucuronyltransferase.  go_component Golgi apparatus|GO:0005794|19224953|IDA  go_component membrane|GO:0016020||ISS  go_process glucuronoxylan biosynthetic process|GO:0010417|19224953|IGI  go_function catalytic activity|GO:0003824||ISS  product F8H (FRA8 HOMOLOG); catalytic  note FRA8 HOMOLOG (F8H); FUNCTIONS IN: catalytic activity; INVOLVED IN: glucuronoxylan biosynthetic process; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: FRA8 (FRAGILE FIBER 8); glucuronosyltransferase/ transferase (TAIR:AT2G28110.1); Has 888 Blast hits to 882 proteins in 88 species: Archae - 0; Bacteria - 10; Metazoa - 268; Fungi - 4; Plants - 506; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).  protein_id AT5G22940.1p  transcript_id AT5G22940.1  protein_id AT5G22940.1p  transcript_id AT5G22940.1  
At5g22950	chr5:007681380	0.0	W/7681380-7681491,7681741-7681817,7681904-7682006,7682096-7682217,7682349-7682543,7682640-7682720	AT5G22950.1  CDS  gene_syn MRN17.18, MRN17_18, VPS24, VPS24.1  gene VPS24.1  go_component ESCRT III complex|GO:0000815|17090720|ISS  go_process vesicle-mediated transport|GO:0016192|16488176|ISS  product VPS24.1  note VPS24.1; INVOLVED IN: vesicle-mediated transport; LOCATED IN: ESCRT III complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: VPS24.2 (TAIR:AT3G45000.1); Has 1310 Blast hits to 1309 proteins in 191 species: Archae - 14; Bacteria - 29; Metazoa - 586; Fungi - 224; Plants - 254; Viruses - 0; Other Eukaryotes - 203 (source: NCBI BLink).  protein_id AT5G22950.1p  transcript_id AT5G22950.1  protein_id AT5G22950.1p  transcript_id AT5G22950.1  
At5g22960	chr5:007684795	0.0	C/7684795-7685052,7684302-7684421,7684014-7684208	AT5G22960.1  CDS  gene_syn MRN17.19, MRN17_19  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product serine carboxypeptidase S10 family protein  note serine carboxypeptidase S10 family protein; FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl48 (serine carboxypeptidase-like 48); serine-type carboxypeptidase (TAIR:AT3G45010.1); Has 2118 Blast hits to 2084 proteins in 194 species: Archae - 0; Bacteria - 8; Metazoa - 549; Fungi - 551; Plants - 812; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink).  protein_id AT5G22960.1p  transcript_id AT5G22960.1  protein_id AT5G22960.1p  transcript_id AT5G22960.1  
At5g22970	chr5:007686353	0.0	C/7686353-7686766	AT5G22970.1  CDS  gene_syn MRN17.20, MRN17_20  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G60000.1); Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G22970.1p  transcript_id AT5G22970.1  protein_id AT5G22970.1p  transcript_id AT5G22970.1  
At5g22980	chr5:007688084	0.0	W/7688084-7688418,7688522-7688690,7688798-7688917,7689007-7689150,7689224-7689374,7689468-7689556,7689639-7689897,7690143-7690276,7690365-7690481	AT5G22980.1  CDS  gene_syn MRN17.21, MRN17_21, scpl47, serine carboxypeptidase-like 47  gene scpl47  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl47 (serine carboxypeptidase-like 47); serine-type carboxypeptidase  note serine carboxypeptidase-like 47 (scpl47); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl48 (serine carboxypeptidase-like 48); serine-type carboxypeptidase (TAIR:AT3G45010.1); Has 2538 Blast hits to 2451 proteins in 301 species: Archae - 0; Bacteria - 159; Metazoa - 593; Fungi - 584; Plants - 892; Viruses - 0; Other Eukaryotes - 310 (source: NCBI BLink).  protein_id AT5G22980.1p  transcript_id AT5G22980.1  protein_id AT5G22980.1p  transcript_id AT5G22980.1  
At5g22990	chr5:007691494	0.0	C/7691494-7692468	AT5G22990.1  CDS  gene_syn MRN17.22, MRN17_22  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT2G15740.1); Has 26 Blast hits to 26 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G22990.1p  transcript_id AT5G22990.1  protein_id AT5G22990.1p  transcript_id AT5G22990.1  
At5g23000	chr5:007696234	0.0	W/7696234-7696369,7696462-7696591,7696989-7697712	AT5G23000.1  CDS  gene_syn ATMYB37, MYB DOMAIN PROTEIN 37, MYB37, RAX1, REGULATOR OF AXILLARY MERISTEMS 1, T20O7.2, T20O7_2  gene MYB37  function Putative homolog of the Blind gene in tomato. Together with RAX2 and RAX3 belong to the class R2R3 MYB genes; encoded by the Myb-like transcription factor MYB37, regulates axillary meristem formation. RAX1 is expressed in a small central domain within the boundary zone separating SAM and leaf primordia during early leaf primordium development and is currently the earliest spatial marker for future axillary meristems. Member of the R2R3 factor gene family.  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB37 (MYB DOMAIN PROTEIN 37); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 37 (MYB37); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: RAX2 (REGULATOR OF AXILLARY MERISTEMS 2); DNA binding / transcription factor (TAIR:AT2G36890.1); Has 6350 Blast hits to 5828 proteins in 346 species: Archae - 0; Bacteria - 0; Metazoa - 681; Fungi - 278; Plants - 3778; Viruses - 6; Other Eukaryotes - 1607 (source: NCBI BLink).  protein_id AT5G23000.1p  transcript_id AT5G23000.1  protein_id AT5G23000.1p  transcript_id AT5G23000.1  
At5g23010	chr5:007703173	0.0	W/7703173-7703616,7704294-7704553,7705055-7705268,7705399-7705479,7705570-7705662,7705749-7705835,7706040-7706140,7706233-7706266,7706369-7706443,7706638-7706769	AT5G23010.1  CDS  gene_syn 2-ISOPROPYLMALATE SYNTHASE, 2-ISOPROPYLMALATE SYNTHASE 3, IMS3, MAM1, METHYLTHIOALKYLMALATE SYNTHASE, METHYLTHIOALKYLMALATE SYNTHASE 1, T20O7.3, T20O7_3  gene MAM1  function Encodes a methylthioalkylmalate synthase, catalyzes the condensation reactions of the first two rounds of methionine chain elongation in the biosynthesis of methionine-derived glucosinolates.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|11706188|ISS  go_process glucosinolate biosynthetic process|GO:0019761|11706188|IDA  go_process glucosinolate biosynthetic process|GO:0019761|11706188|IMP  go_process glucosinolate biosynthetic process|GO:0019761|15155874|IGI  go_function 2-isopropylmalate synthase activity|GO:0003852|15155874|IGI  go_function methylthioalkylmalate synthase activity|GO:0010177|14740211|IDA  product MAM1 (METHYLTHIOALKYLMALATE SYNTHASE 1); 2-isopropylmalate synthase/ methylthioalkylmalate synthase  note METHYLTHIOALKYLMALATE SYNTHASE 1 (MAM1); FUNCTIONS IN: methylthioalkylmalate synthase activity, 2-isopropylmalate synthase activity; INVOLVED IN: glucosinolate biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Alpha-isopropylmalate/homocitrate synthase, conserved site (InterPro:IPR002034), Pyruvate carboxyltransferase (InterPro:IPR000891); BEST Arabidopsis thaliana protein match is: IMS2 (2-ISOPROPYLMALATE SYNTHASE 2); 2-isopropylmalate synthase/ methylthioalkylmalate synthase (TAIR:AT5G23020.1); Has 12409 Blast hits to 12408 proteins in 1417 species: Archae - 333; Bacteria - 5179; Metazoa - 211; Fungi - 337; Plants - 197; Viruses - 0; Other Eukaryotes - 6152 (source: NCBI BLink).  protein_id AT5G23010.1p  transcript_id AT5G23010.1  protein_id AT5G23010.1p  transcript_id AT5G23010.1  
At5g23020	chr5:007718203	0.0	W/7718203-7718646,7718946-7719205,7719603-7719816,7719927-7720007,7720503-7720595,7720703-7720789,7720882-7720982,7721088-7721121,7721288-7721362,7721512-7721634	AT5G23020.1  CDS  gene_syn 2-ISOPROPYLMALATE SYNTHASE 2, IMS2, MAM-L, MAM3, METHYLTHIOALKYMALATE SYNTHASE-LIKE, MYJ24.1, MYJ24_1  gene IMS2  function methylthioalkymalate synthase-like. Also known as 2-isopropylmalate synthase (IMS2). encodes a methylthioalkylmalate synthase involved in the biosynthesis of aliphatic glucosinolates which accepts all the omega-methylthio-2-oxoalkanoic acids needed to form the known C3 to C8 glucosinolates in Arabidopsis.  go_component chloroplast|GO:0009507|17369439|IDA  go_process leucine biosynthetic process|GO:0009098|12432038|TAS  go_process glucosinolate biosynthetic process|GO:0019761|15155874|IGI  go_process glucosinolate biosynthetic process|GO:0019761|15155874|IMP  go_process glucosinolate biosynthetic process|GO:0019761|17369439|IDA  go_function 2-isopropylmalate synthase activity|GO:0003852|12432038|NAS  go_function 2-isopropylmalate synthase activity|GO:0003852|15155874|IGI  go_function methylthioalkylmalate synthase activity|GO:0010177|17369439|IDA  product IMS2 (2-ISOPROPYLMALATE SYNTHASE 2); 2-isopropylmalate synthase/ methylthioalkylmalate synthase  note 2-ISOPROPYLMALATE SYNTHASE 2 (IMS2); FUNCTIONS IN: methylthioalkylmalate synthase activity, 2-isopropylmalate synthase activity; INVOLVED IN: glucosinolate biosynthetic process, leucine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Alpha-isopropylmalate/homocitrate synthase, conserved site (InterPro:IPR002034), Pyruvate carboxyltransferase (InterPro:IPR000891); BEST Arabidopsis thaliana protein match is: MAM1 (METHYLTHIOALKYLMALATE SYNTHASE 1); 2-isopropylmalate synthase/ methylthioalkylmalate synthase (TAIR:AT5G23010.1); Has 11803 Blast hits to 11802 proteins in 1397 species: Archae - 327; Bacteria - 4937; Metazoa - 149; Fungi - 304; Plants - 197; Viruses - 0; Other Eukaryotes - 5889 (source: NCBI BLink).  protein_id AT5G23020.1p  transcript_id AT5G23020.1  protein_id AT5G23020.1p  transcript_id AT5G23020.1  
At5g23027	chr5:007725573	0.0	C/7725573-7725728	AT5G23027.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G23027.1p  transcript_id AT5G23027.1  protein_id AT5G23027.1p  transcript_id AT5G23027.1  
At5g23030	chr5:007726819	0.0	W/7726819-7727310,7727407-7727709	AT5G23030.1  CDS  gene_syn MYJ24.2, MYJ24_2, TET12, TETRASPANIN12  gene TET12  function Member of TETRASPANIN family  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process aging|GO:0007568||ISS  go_function molecular_function|GO:0003674||ND  product TET12 (TETRASPANIN12)  note TETRASPANIN12 (TET12); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: TET11 (TETRASPANIN11) (TAIR:AT1G18520.1); Has 212 Blast hits to 212 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 212; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G23030.1p  transcript_id AT5G23030.1  protein_id AT5G23030.1p  transcript_id AT5G23030.1  
At5g23035	chr5:007728407	0.0	C/7728407-7728455,7728020-7728237	AT5G23035.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G23035.1p  transcript_id AT5G23035.1  protein_id AT5G23035.1p  transcript_id AT5G23035.1  
At5g23040	chr5:007730866	0.0	C/7730866-7730930,7730560-7730660,7729865-7730247,7729708-7729784,7729465-7729615	AT5G23040.1  CDS  gene_syn CDF1, CELL GROWTH DEFECT FACTOR 1, MYJ24.3, MYJ24_3  gene CDF1  function Cell growth defect factor 1.Causes Bax mediated lethality in yeast by generating reactive oxygen species and this effect is suppressed by AtBI-1.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component mitochondrion|GO:0005739|16192270|IDA  go_process cell death|GO:0008219|16192270|IDA  product CDF1 (CELL GROWTH DEFECT FACTOR 1)  note CELL GROWTH DEFECT FACTOR 1 (CDF1); INVOLVED IN: cell death; LOCATED IN: mitochondrion, chloroplast, chloroplast envelope; EXPRESSED IN: shoot, flower, leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51140.1); Has 126 Blast hits to 126 proteins in 44 species: Archae - 0; Bacteria - 59; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G23040.1p  transcript_id AT5G23040.1  protein_id AT5G23040.1p  transcript_id AT5G23040.1  
At5g23050	chr5:007735149	0.0	C/7735149-7735399,7734936-7735065,7734591-7734847,7734298-7734502,7733926-7733966,7733713-7733838,7733503-7733576,7733198-7733418,7732891-7732985,7732407-7732623,7732183-7732308,7732009-7732107,7731700-7731912,7731513-7731623	AT5G23050.1  CDS  gene_syn AAE17, ACYL-ACTIVATING ENZYME 17, MYJ24.4, MYJ24_4  gene AAE17  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function ligase activity|GO:0016874||ISS  product AAE17 (ACYL-ACTIVATING ENZYME 17); catalytic/ ligase  note ACYL-ACTIVATING ENZYME 17 (AAE17); FUNCTIONS IN: catalytic activity, ligase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AAE18 (ACYL-ACTIVATING ENZYME 18); catalytic/ ligase (TAIR:AT1G55320.1); Has 24475 Blast hits to 23795 proteins in 1471 species: Archae - 412; Bacteria - 12714; Metazoa - 857; Fungi - 653; Plants - 272; Viruses - 0; Other Eukaryotes - 9567 (source: NCBI BLink).  protein_id AT5G23050.1p  transcript_id AT5G23050.1  protein_id AT5G23050.1p  transcript_id AT5G23050.1  
At5g23060	chr5:007738197	0.0	C/7738197-7738412,7737869-7738114,7737577-7737769,7737285-7737426,7737074-7737205,7736760-7736994	AT5G23060.1  CDS  gene_syn CaS, Calcium sensing receptor, MYJ24.5, MYJ24_5  gene CaS  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  product CaS (Calcium sensing receptor)  note Calcium sensing receptor (CaS); LOCATED IN: thylakoid, mitochondrion, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G59780.1); Has 141 Blast hits to 132 proteins in 46 species: Archae - 0; Bacteria - 51; Metazoa - 8; Fungi - 10; Plants - 56; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT5G23060.1p  transcript_id AT5G23060.1  protein_id AT5G23060.1p  transcript_id AT5G23060.1  
At5g23065	chr5:007740610	0.0	C/7740610-7740697	AT5G23065.1  miRNA  gene_syn MICRORNA 162B, MIR162B  gene MIR162B  function Encodes a microRNA that targets DCL1. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCGAUAAACCUCUGCAUCCAG  go_component cellular_component|GO:0005575||ND  go_process gene silencing by miRNA|GO:0035195|15200956|TAS  go_function molecular_function|GO:0003674||ND  product MIR162B (MICRORNA 162B); miRNA  transcript_id AT5G23065.1  
At5g23070	chr5:007741979	0.0	W/7741979-7742827	AT5G23070.1  CDS  gene_syn MYJ24.6, MYJ24_6  go_process anaerobic respiration|GO:0009061||IEA  go_process pyrimidine deoxyribonucleoside interconversion|GO:0019690||IEA  go_function thymidine kinase activity|GO:0004797||IEA  go_function ATP binding|GO:0005524||IEA  go_function thymidine kinase activity|GO:0004797||ISS  product thymidine kinase, putative  note thymidine kinase, putative; FUNCTIONS IN: thymidine kinase activity, ATP binding; INVOLVED IN: pyrimidine deoxyribonucleoside interconversion, anaerobic respiration; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thymidine kinase (InterPro:IPR001267); BEST Arabidopsis thaliana protein match is: thymidine kinase, putative (TAIR:AT3G07800.1); Has 2675 Blast hits to 2665 proteins in 845 species: Archae - 25; Bacteria - 1358; Metazoa - 114; Fungi - 4; Plants - 38; Viruses - 257; Other Eukaryotes - 879 (source: NCBI BLink).  protein_id AT5G23070.1p  transcript_id AT5G23070.1  protein_id AT5G23070.1p  transcript_id AT5G23070.1  
At5g23080	chr5:007748755	0.0	C/7748755-7748889,7748016-7748106,7747845-7747939,7747525-7747628,7747383-7747444,7747192-7747260,7746908-7747047,7746604-7746679,7746184-7746255,7745753-7745897,7745102-7745591,7744694-7744975,7744486-7744614,7743944-7744126,7743226-7743855	AT5G23080.2  CDS  gene_syn MYJ24.7, MYJ24_7, TGH, TOUGH  gene TGH  function Interacts with TATA-box binding protein 2. Contains domains with strong similarity to G-patch and SWAP domains, characteristic of RNA binding and processing proteins. Colocalizes with the splicing regulator SRp34 to subnuclear particles. Role in RNA binding or processing. Mutants display developmental defects, including reduced plant height, polycotyly, and reduced vascularization. Strong genetic interaction between TGH and AMP1.  go_component nucleus|GO:0005634|16024589|IDA  go_process RNA processing|GO:0006396|16024589|TAS  go_process RNA processing|GO:0006396||ISS  go_process multicellular organismal development|GO:0007275|16024589|IMP  go_process auxin mediated signaling pathway|GO:0009734|16024589|IMP  go_process auxin polar transport|GO:0009926|16024589|IMP  go_process phloem or xylem histogenesis|GO:0010087|16024589|IMP  go_function RNA binding|GO:0003723|16024589|TAS  go_function RNA binding|GO:0003723||ISS  go_function protein binding|GO:0005515|16024589|IPI  product TGH (TOUGH); RNA binding / protein binding  note TOUGH (TGH); FUNCTIONS IN: protein binding, RNA binding; INVOLVED IN: multicellular organismal development, phloem or xylem histogenesis, auxin mediated signaling pathway, auxin polar transport, RNA processing; LOCATED IN: nucleus; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1604 (InterPro:IPR011666), SWAP/Surp (InterPro:IPR000061); Has 33160 Blast hits to 16810 proteins in 690 species: Archae - 10; Bacteria - 913; Metazoa - 18984; Fungi - 2775; Plants - 1722; Viruses - 157; Other Eukaryotes - 8599 (source: NCBI BLink).  protein_id AT5G23080.2p  transcript_id AT5G23080.2  protein_id AT5G23080.2p  transcript_id AT5G23080.2  
At5g23080	chr5:007748755	0.0	C/7748755-7748889,7748016-7748106,7747845-7747939,7747525-7747628,7747383-7747444,7747192-7747260,7746908-7747047,7746604-7746679,7746433-7746519,7746184-7746258,7745753-7745897,7745102-7745591,7744694-7744975,7744486-7744614,7743944-7744126,7743226-7743855	AT5G23080.1  CDS  gene_syn MYJ24.7, MYJ24_7, TGH, TOUGH  gene TGH  function Interacts with TATA-box binding protein 2. Contains domains with strong similarity to G-patch and SWAP domains, characteristic of RNA binding and processing proteins. Colocalizes with the splicing regulator SRp34 to subnuclear particles. Role in RNA binding or processing. Mutants display developmental defects, including reduced plant height, polycotyly, and reduced vascularization. Strong genetic interaction between TGH and AMP1.  go_component nucleus|GO:0005634|16024589|IDA  go_process RNA processing|GO:0006396|16024589|TAS  go_process RNA processing|GO:0006396||ISS  go_process multicellular organismal development|GO:0007275|16024589|IMP  go_process auxin mediated signaling pathway|GO:0009734|16024589|IMP  go_process auxin polar transport|GO:0009926|16024589|IMP  go_process phloem or xylem histogenesis|GO:0010087|16024589|IMP  go_function RNA binding|GO:0003723|16024589|TAS  go_function RNA binding|GO:0003723||ISS  go_function protein binding|GO:0005515|16024589|IPI  product TGH (TOUGH); RNA binding / protein binding  note TOUGH (TGH); FUNCTIONS IN: protein binding, RNA binding; INVOLVED IN: multicellular organismal development, phloem or xylem histogenesis, auxin mediated signaling pathway, auxin polar transport, RNA processing; LOCATED IN: nucleus; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1604 (InterPro:IPR011666), SWAP/Surp (InterPro:IPR000061); Has 33140 Blast hits to 16803 proteins in 689 species: Archae - 10; Bacteria - 913; Metazoa - 18978; Fungi - 2772; Plants - 1722; Viruses - 153; Other Eukaryotes - 8592 (source: NCBI BLink).  protein_id AT5G23080.1p  transcript_id AT5G23080.1  protein_id AT5G23080.1p  transcript_id AT5G23080.1  
At5g23090	chr5:007749391	0.0	W/7749391-7749445,7749600-7749689,7749776-7749939,7750033-7750203	AT5G23090.1  CDS  gene_syn MYJ24.8, MYJ24_8, NF-YB13, NUCLEAR FACTOR Y, SUBUNIT B13  gene NF-YB13  go_component nucleus|GO:0005634|14617066|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT B13 (NF-YB13); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: NF-YB12 (NUCLEAR FACTOR Y, SUBUNIT B12); DNA binding / transcription factor (TAIR:AT5G08190.1); Has 987 Blast hits to 987 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 384; Fungi - 235; Plants - 292; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT5G23090.1p  transcript_id AT5G23090.1  protein_id AT5G23090.1p  transcript_id AT5G23090.1  
At5g23090	chr5:007749391	0.0	W/7749391-7749445,7749600-7749689,7749776-7749939,7750033-7750203	AT5G23090.2  CDS  gene_syn MYJ24.8, MYJ24_8, NF-YB13, NUCLEAR FACTOR Y, SUBUNIT B13  gene NF-YB13  go_component nucleus|GO:0005634|14617066|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT B13 (NF-YB13); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: NF-YB12 (NUCLEAR FACTOR Y, SUBUNIT B12); DNA binding / transcription factor (TAIR:AT5G08190.1); Has 987 Blast hits to 987 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 384; Fungi - 235; Plants - 292; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT5G23090.2p  transcript_id AT5G23090.2  protein_id AT5G23090.2p  transcript_id AT5G23090.2  
At5g23090	chr5:007749391	0.0	W/7749391-7749445,7749600-7749689,7749776-7749939,7750036-7750203	AT5G23090.4  CDS  gene_syn MYJ24.8, MYJ24_8, NF-YB13, NUCLEAR FACTOR Y, SUBUNIT B13  gene NF-YB13  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT B13 (NF-YB13); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: NF-YB12 (NUCLEAR FACTOR Y, SUBUNIT B12); DNA binding / transcription factor (TAIR:AT5G08190.2); Has 984 Blast hits to 984 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 384; Fungi - 235; Plants - 292; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT5G23090.4p  transcript_id AT5G23090.4  protein_id AT5G23090.4p  transcript_id AT5G23090.4  
At5g23090	chr5:007749391	0.0	W/7749391-7749445,7749639-7749689,7749776-7749939,7750033-7750203	AT5G23090.3  CDS  gene_syn MYJ24.8, MYJ24_8, NF-YB13, NUCLEAR FACTOR Y, SUBUNIT B13  gene NF-YB13  go_component nucleus|GO:0005634|14617066|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT B13 (NF-YB13); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: NF-YB12 (NUCLEAR FACTOR Y, SUBUNIT B12); DNA binding / transcription factor (TAIR:AT5G08190.1); Has 820 Blast hits to 820 proteins in 173 species: Archae - 0; Bacteria - 0; Metazoa - 266; Fungi - 200; Plants - 290; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT5G23090.3p  transcript_id AT5G23090.3  protein_id AT5G23090.3p  transcript_id AT5G23090.3  
At5g23100	chr5:007753557	0.0	W/7753557-7754390	AT5G23100.1  CDS  gene_syn MYJ24.9, MYJ24_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF617, plant (InterPro:IPR006460); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25640.1); Has 135 Blast hits to 134 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G23100.1p  transcript_id AT5G23100.1  protein_id AT5G23100.1p  transcript_id AT5G23100.1  
At5g23110	chr5:007758307	0.0	W/7758307-7758635,7758788-7759514,7759867-7765832,7766048-7767522,7767809-7768072,7768345-7768565,7769090-7769361,7769754-7772697,7772784-7772916,7773347-7773870,7773965-7774855,7775045-7775221,7775312-7775509	AT5G23110.1  CDS  gene_syn MYJ24.15, MYJ24_15  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), ATP-binding region, ATPase-like (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G73950.1); Has 2476 Blast hits to 1796 proteins in 199 species: Archae - 0; Bacteria - 49; Metazoa - 1652; Fungi - 152; Plants - 284; Viruses - 80; Other Eukaryotes - 259 (source: NCBI BLink).  protein_id AT5G23110.1p  transcript_id AT5G23110.1  protein_id AT5G23110.1p  transcript_id AT5G23110.1  
At5g23120	chr5:007778154	0.0	W/7778154-7778484,7778574-7778809,7778902-7779032,7779145-7779277,7779546-7779668,7779964-7780038,7780124-7780239,7780397-7780463	AT5G23120.1  CDS  gene_syn HCF136, MYJ24.11, MYJ24_11  gene HCF136  function encodes a stability and/or assembly factor of photosystem II  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component chloroplast stromal thylakoid|GO:0009533|9736608|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|ISS  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  go_component chloroplast photosystem II|GO:0030095||ISS  go_process protein complex assembly|GO:0006461|12459468|IMP  go_process plastid organization|GO:0009657|9736608|IMP  go_function protein binding|GO:0005515|12459468|IDA  product HCF136; protein binding  note HCF136; FUNCTIONS IN: protein binding; INVOLVED IN: response to cadmium ion, plastid organization, protein complex assembly; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II stability/assembly factor, HCF136 (InterPro:IPR016705), Twin-arginine translocation pathway signal (InterPro:IPR006311); Has 844 Blast hits to 643 proteins in 174 species: Archae - 0; Bacteria - 554; Metazoa - 0; Fungi - 2; Plants - 23; Viruses - 0; Other Eukaryotes - 265 (source: NCBI BLink).  protein_id AT5G23120.1p  transcript_id AT5G23120.1  protein_id AT5G23120.1p  transcript_id AT5G23120.1  
At5g23130	chr5:007781475	0.0	W/7781475-7781744,7781829-7781959,7782541-7783333	AT5G23130.1  CDS  gene_syn MYJ24.12, MYJ24_12  go_process cell wall macromolecule catabolic process|GO:0016998||IEA  go_component cellular_component|GO:0005575||ND  go_process cell wall macromolecule catabolic process|GO:0016998||ISS  go_function molecular_function|GO:0003674||ND  product peptidoglycan-binding LysM domain-containing protein  note peptidoglycan-binding LysM domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482); BEST Arabidopsis thaliana protein match is: peptidoglycan-binding LysM domain-containing protein (TAIR:AT5G08200.1); Has 333 Blast hits to 206 proteins in 48 species: Archae - 0; Bacteria - 13; Metazoa - 128; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).  protein_id AT5G23130.1p  transcript_id AT5G23130.1  protein_id AT5G23130.1p  transcript_id AT5G23130.1  
At5g23140	chr5:007783811	0.0	W/7783811-7784117,7784408-7784826	AT5G23140.1  CDS  gene_syn CLPP2, MYJ24.13, MYJ24_13, NCLPP7, NUCLEAR-ENCODED CLP PROTEASE P7  gene NCLPP7  function One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).  go_component plastid stroma|GO:0009532|14593120|IDA  go_process proteolysis|GO:0006508||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial matrix|GO:0005759|11352464|IDA  go_component chloroplast thylakoid membrane|GO:0009535|11278690|IDA  go_component chloroplast stroma|GO:0009570|11278690|IDA  go_component chloroplastic endopeptidase Clp complex|GO:0009840|11278690|IDA  product NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7); serine-type endopeptidase  note NUCLEAR-ENCODED CLP PROTEASE P7 (NCLPP7); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5); serine-type endopeptidase (TAIR:AT1G02560.1); Has 9336 Blast hits to 9334 proteins in 1709 species: Archae - 2; Bacteria - 4703; Metazoa - 115; Fungi - 50; Plants - 690; Viruses - 85; Other Eukaryotes - 3691 (source: NCBI BLink).  protein_id AT5G23140.1p  transcript_id AT5G23140.1  protein_id AT5G23140.1p  transcript_id AT5G23140.1  
At5g23150	chr5:007786173	0.0	W/7786173-7786283,7786692-7786768,7786992-7788719,7788792-7789308,7789539-7789647,7789859-7789971,7790051-7790238,7790370-7791051,7791154-7791640,7791817-7791912,7792010-7792080	AT5G23150.1  CDS  gene_syn ENHANCER OF AG-4 2, HUA2, MYJ24.14, MYJ24_14  gene HUA2  function Putative transcription factor. Member of the floral homeotic AGAMOUS pathway.Mutations in HUA enhance the phenotype of mild ag-4 allele. Single hua mutants are early flowering and have reduced levels of FLC mRNA. Other MADS box flowering time genes such as FLM and MAF2 also appear to be regulated by HUA2. HUA2 normally activates FLC expression and enhances AG function.  go_process negative regulation of flower development|GO:0009910|15659097|IMP  go_process maintenance of floral organ identity|GO:0048497|10198637|IMP  go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|17764945|IMP  go_function transcription factor activity|GO:0003700|10198637|ISS  product HUA2 (ENHANCER OF AG-4 2); transcription factor  note ENHANCER OF AG-4 2 (HUA2); FUNCTIONS IN: transcription factor activity; INVOLVED IN: maintenance of floral organ identity, negative regulation of flower development, regulation of timing of transition from vegetative to reproductive phase; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), Regulation of nuclear pre-mRNA protein (InterPro:IPR006569), PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: PWWP domain-containing protein (TAIR:AT5G08230.1); Has 103642 Blast hits to 48464 proteins in 1688 species: Archae - 210; Bacteria - 17151; Metazoa - 41891; Fungi - 11729; Plants - 15185; Viruses - 3257; Other Eukaryotes - 14219 (source: NCBI BLink).  protein_id AT5G23150.1p  transcript_id AT5G23150.1  protein_id AT5G23150.1p  transcript_id AT5G23150.1  
At5g23155	chr5:007794142	0.0	W/7794142-7795010	AT5G23155.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G23155.1  
At5g23160	chr5:007795966	0.0	C/7795966-7796310,7795409-7795879	AT5G23160.1  CDS  gene_syn MKD15.2, MKD15_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08240.1); Has 50 Blast hits to 50 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G23160.1p  transcript_id AT5G23160.1  protein_id AT5G23160.1p  transcript_id AT5G23160.1  
At5g23170	chr5:007798411	0.0	C/7798411-7799436	AT5G23170.1  CDS  gene_syn MKD15.3, MKD15_3  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G28390.1); Has 82198 Blast hits to 81327 proteins in 2161 species: Archae - 58; Bacteria - 7260; Metazoa - 35302; Fungi - 6798; Plants - 18154; Viruses - 417; Other Eukaryotes - 14209 (source: NCBI BLink).  protein_id AT5G23170.1p  transcript_id AT5G23170.1  protein_id AT5G23170.1p  transcript_id AT5G23170.1  
At5g23180	chr5:007801474	0.0	W/7801474-7801890	AT5G23180.1  CDS  gene_syn MKD15.4, MKD15_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, D bilateral stage, LP.08 eight leaves visible; BEST Arabidopsis thaliana protein match is: transcription regulator (TAIR:AT4G01260.1); Has 16 Blast hits to 16 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G23180.1p  transcript_id AT5G23180.1  protein_id AT5G23180.1p  transcript_id AT5G23180.1  
At5g23190	chr5:007804403	0.0	C/7804403-7805659,7803478-7803900	AT5G23190.1  CDS  gene_syn CYP86B1, MKD15.5, MKD15_5  gene CYP86B1  function cytochrome P450 CYP86B1, nuclear gene for chloroplast product  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component cellular_component|GO:0005575||ND  go_function oxygen binding|GO:0019825||ISS  product CYP86B1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP86B1; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450 family protein (TAIR:AT5G08250.1); Has 20082 Blast hits to 20023 proteins in 1051 species: Archae - 19; Bacteria - 1449; Metazoa - 9176; Fungi - 3814; Plants - 4852; Viruses - 3; Other Eukaryotes - 769 (source: NCBI BLink).  protein_id AT5G23190.1p  transcript_id AT5G23190.1  protein_id AT5G23190.1p  transcript_id AT5G23190.1  
At5g23200	chr5:007807319	0.0	W/7807319-7807348,7807556-7807650,7807816-7808090,7808189-7808988	AT5G23200.1  CDS  gene_syn MKD15.6, MKD15_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08270.1); Has 52 Blast hits to 52 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G23200.1p  transcript_id AT5G23200.1  protein_id AT5G23200.1p  transcript_id AT5G23200.1  
At5g23210	chr5:007810892	0.0	W/7810892-7811198,7812640-7812750,7812847-7812942,7813033-7813125,7813237-7813325,7813421-7813738,7813822-7813958,7814293-7814385,7814473-7814578,7814688-7814837	AT5G23210.1  CDS  gene_syn MKD15.7, MKD15_7, SCPL34  gene SCPL34  go_component vacuole|GO:0005773|15539469|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product SCPL34; serine-type carboxypeptidase  note SCPL34; FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl35 (serine carboxypeptidase-like 35); serine-type carboxypeptidase (TAIR:AT5G08260.1); Has 2666 Blast hits to 2625 proteins in 336 species: Archae - 0; Bacteria - 234; Metazoa - 571; Fungi - 566; Plants - 965; Viruses - 0; Other Eukaryotes - 330 (source: NCBI BLink).  protein_id AT5G23210.1p  transcript_id AT5G23210.1  protein_id AT5G23210.1p  transcript_id AT5G23210.1  
At5g23210	chr5:007810892	0.0	W/7810892-7811198,7812640-7812750,7812847-7812942,7813033-7813125,7813237-7813325,7813421-7813738,7813822-7813958,7814293-7814385,7814473-7814608	AT5G23210.3  CDS  gene_syn MKD15.7, MKD15_7, SCPL34  gene SCPL34  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product SCPL34; serine-type carboxypeptidase  note SCPL34; FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl35 (serine carboxypeptidase-like 35); serine-type carboxypeptidase (TAIR:AT5G08260.1); Has 2644 Blast hits to 2607 proteins in 335 species: Archae - 0; Bacteria - 234; Metazoa - 566; Fungi - 564; Plants - 959; Viruses - 0; Other Eukaryotes - 321 (source: NCBI BLink).  protein_id AT5G23210.3p  transcript_id AT5G23210.3  protein_id AT5G23210.3p  transcript_id AT5G23210.3  
At5g23210	chr5:007811625	0.0	W/7811625-7811643,7812640-7812750,7812847-7812942,7813033-7813125,7813237-7813325,7813421-7813738,7813822-7813958,7814293-7814385,7814473-7814578,7814688-7814837	AT5G23210.2  CDS  gene_syn MKD15.7, MKD15_7, SCPL34  gene SCPL34  go_component vacuole|GO:0005773|15539469|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product SCPL34; serine-type carboxypeptidase  note SCPL34; FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl35 (serine carboxypeptidase-like 35); serine-type carboxypeptidase (TAIR:AT5G08260.1); Has 2282 Blast hits to 2243 proteins in 208 species: Archae - 0; Bacteria - 10; Metazoa - 557; Fungi - 550; Plants - 947; Viruses - 0; Other Eukaryotes - 218 (source: NCBI BLink).  protein_id AT5G23210.2p  transcript_id AT5G23210.2  protein_id AT5G23210.2p  transcript_id AT5G23210.2  
At5g23210	chr5:007811625	0.0	W/7811625-7811643,7812640-7812750,7812847-7812942,7813033-7813125,7813237-7813325,7813421-7813738,7813822-7813958,7814293-7814385,7814473-7814608	AT5G23210.4  CDS  gene_syn MKD15.7, MKD15_7, SCPL34  gene SCPL34  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product SCPL34; serine-type carboxypeptidase  note SCPL34; FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl35 (serine carboxypeptidase-like 35); serine-type carboxypeptidase (TAIR:AT5G08260.1); Has 2258 Blast hits to 2223 proteins in 207 species: Archae - 0; Bacteria - 10; Metazoa - 552; Fungi - 546; Plants - 941; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink).  protein_id AT5G23210.4p  transcript_id AT5G23210.4  protein_id AT5G23210.4p  transcript_id AT5G23210.4  
At5g23212	chr5:007815810	0.0	C/7815810-7815882,7815405-7815559	AT5G23212.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G51845.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G23212.1p  transcript_id AT5G23212.1  protein_id AT5G23212.1p  transcript_id AT5G23212.1  
At5g23220	chr5:007820068	0.0	C/7820068-7820664	AT5G23220.1  CDS  gene_syn MKD15.8, MKD15_8, NIC3, NICOTINAMIDASE 3  gene NIC3  go_process metabolic process|GO:0008152||IEA  go_process metabolic process|GO:0008152||ISS  go_function catalytic activity|GO:0003824||ISS  go_function nicotinamidase activity|GO:0008936|17587307|IDA  product NIC3 (NICOTINAMIDASE 3); catalytic/ nicotinamidase  note NICOTINAMIDASE 3 (NIC3); FUNCTIONS IN: nicotinamidase activity, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Isochorismatase hydrolase (InterPro:IPR000868); BEST Arabidopsis thaliana protein match is: NIC2 (NICOTINAMIDASE 2); catalytic/ nicotinamidase (TAIR:AT5G23230.1); Has 3840 Blast hits to 3838 proteins in 767 species: Archae - 133; Bacteria - 3190; Metazoa - 0; Fungi - 93; Plants - 49; Viruses - 0; Other Eukaryotes - 375 (source: NCBI BLink).  protein_id AT5G23220.1p  transcript_id AT5G23220.1  protein_id AT5G23220.1p  transcript_id AT5G23220.1  
At5g23230	chr5:007826005	0.0	C/7826005-7826601	AT5G23230.1  CDS  gene_syn MKD15.9, MKD15_9, NIC2, NICOTINAMIDASE 2  gene NIC2  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_process NAD metabolic process|GO:0019674|17587307|IMP  go_function catalytic activity|GO:0003824||ISS  go_function nicotinamidase activity|GO:0008936|17587307|IDA  product NIC2 (NICOTINAMIDASE 2); catalytic/ nicotinamidase  note NICOTINAMIDASE 2 (NIC2); FUNCTIONS IN: nicotinamidase activity, catalytic activity; INVOLVED IN: NAD metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Isochorismatase hydrolase (InterPro:IPR000868); BEST Arabidopsis thaliana protein match is: NIC3 (NICOTINAMIDASE 3); catalytic/ nicotinamidase (TAIR:AT5G23220.1); Has 4281 Blast hits to 4279 proteins in 809 species: Archae - 137; Bacteria - 3598; Metazoa - 0; Fungi - 94; Plants - 51; Viruses - 0; Other Eukaryotes - 401 (source: NCBI BLink).  protein_id AT5G23230.1p  transcript_id AT5G23230.1  protein_id AT5G23230.1p  transcript_id AT5G23230.1  
At5g23235	chr5:007826028	0.0	W/7826028-7828724	AT5G23235.1  pseudogenic_transcript  pseudo  note pseudogene, antisense mRNA to genes At5g23230 and At5g23240, blastp match of 34% identity and 7.4e-17 P-value to OMNI|TM0133 isochorismatase-related protein {Thermotoga maritima MSB8}  
At5g23240	chr5:007828202	0.0	C/7828202-7828534,7827859-7828115,7827552-7827735,7826857-7827480	AT5G23240.1  CDS  gene_syn MKD15.10, MKD15_10  go_component chloroplast|GO:0009507||IEA  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G42750.1); Has 11327 Blast hits to 11327 proteins in 1719 species: Archae - 102; Bacteria - 4550; Metazoa - 1876; Fungi - 796; Plants - 813; Viruses - 5; Other Eukaryotes - 3185 (source: NCBI BLink).  protein_id AT5G23240.1p  transcript_id AT5G23240.1  protein_id AT5G23240.1p  transcript_id AT5G23240.1  
At5g23250	chr5:007830460	0.0	W/7830460-7830696,7830930-7831139,7831258-7831428,7831637-7831760,7832026-7832087,7832176-7832257,7832352-7832491	AT5G23250.1  CDS  gene_syn MKD15.11, MKD15_11  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function ATP citrate synthase activity|GO:0003878||IEA  go_function succinate-CoA ligase (ADP-forming) activity|GO:0004775||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process metabolic process|GO:0008152||ISS  go_function succinate-CoA ligase (GDP-forming) activity|GO:0004776||ISS  product succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative  note succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative; FUNCTIONS IN: succinate-CoA ligase (ADP-forming) activity, succinate-CoA ligase (GDP-forming) activity, binding, ATP citrate synthase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Succinyl-CoA ligase, alpha subunit (InterPro:IPR005810), ATP-citrate lyase/succinyl-CoA ligase (InterPro:IPR005811), NAD(P)-binding (InterPro:IPR016040), CoA-binding (InterPro:IPR003781), ATP-citrate lyase/succinyl-CoA ligase, active site (InterPro:IPR017440), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative (TAIR:AT5G08300.1); Has 7114 Blast hits to 7113 proteins in 1234 species: Archae - 196; Bacteria - 2692; Metazoa - 350; Fungi - 188; Plants - 87; Viruses - 0; Other Eukaryotes - 3601 (source: NCBI BLink).  protein_id AT5G23250.1p  transcript_id AT5G23250.1  protein_id AT5G23250.1p  transcript_id AT5G23250.1  
At5g23250	chr5:007830460	0.0	W/7830460-7830696,7830930-7831139,7831258-7831428,7831637-7831760,7832026-7832087,7832176-7832265	AT5G23250.2  CDS  gene_syn MKD15.11, MKD15_11  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function ATP citrate synthase activity|GO:0003878||IEA  go_function succinate-CoA ligase (ADP-forming) activity|GO:0004775||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process metabolic process|GO:0008152||ISS  go_function succinate-CoA ligase (GDP-forming) activity|GO:0004776||ISS  product succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative  note succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative; FUNCTIONS IN: succinate-CoA ligase (ADP-forming) activity, succinate-CoA ligase (GDP-forming) activity, binding, ATP citrate synthase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Succinyl-CoA ligase, alpha subunit (InterPro:IPR005810), ATP-citrate lyase/succinyl-CoA ligase (InterPro:IPR005811), NAD(P)-binding (InterPro:IPR016040), CoA-binding (InterPro:IPR003781), ATP-citrate lyase/succinyl-CoA ligase, active site (InterPro:IPR017440), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative (TAIR:AT5G08300.1); Has 6965 Blast hits to 6964 proteins in 1228 species: Archae - 179; Bacteria - 2639; Metazoa - 350; Fungi - 192; Plants - 86; Viruses - 0; Other Eukaryotes - 3519 (source: NCBI BLink).  protein_id AT5G23250.2p  transcript_id AT5G23250.2  protein_id AT5G23250.2p  transcript_id AT5G23250.2  
At5g23260	chr5:007836442	0.0	W/7836442-7836629,7837386-7837455,7837566-7837730,7837822-7837863,7837961-7838002,7838089-7838340	AT5G23260.2  CDS  gene_syn ABS, AGAMOUS-LIKE 32, AGL32, ARABIDOPSIS BSISTER, MKD15.12, MKD15_12, TRANSPARENT TESTA16, TT16  gene TT16  function Encodes a MADS box protein. Regulates proanthocyanidin biosynthesis in the inner-most cell layer of the seed coat. Also controls cell shape of the inner-most cell layer of the seed coat. Also shown to be necessary for determining the identity of the endothelial layer within the ovule.  go_component nucleus|GO:0005634||IEA  go_process regulation of cell shape|GO:0008360|12368498|IMP  go_process proanthocyanidin biosynthetic process|GO:0010023|12368498|IMP  go_process seed development|GO:0048316|16925602|IMP  go_process ovule development|GO:0048481|16925602|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12368498|IMP  go_function transcription factor activity|GO:0003700|12368498|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product TT16 (TRANSPARENT TESTA16); transcription factor  note TRANSPARENT TESTA16 (TT16); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of cell shape, seed development, proanthocyanidin biosynthetic process, ovule development; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGL21; transcription factor (TAIR:AT4G37940.1); Has 5187 Blast hits to 5184 proteins in 682 species: Archae - 0; Bacteria - 0; Metazoa - 562; Fungi - 201; Plants - 4358; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT5G23260.2p  transcript_id AT5G23260.2  protein_id AT5G23260.2p  transcript_id AT5G23260.2  
At5g23260	chr5:007836442	0.0	W/7836442-7836629,7837386-7837455,7837566-7837730,7837837-7837863,7837961-7838002,7838089-7838340	AT5G23260.1  CDS  gene_syn ABS, AGAMOUS-LIKE 32, AGL32, ARABIDOPSIS BSISTER, MKD15.12, MKD15_12, TRANSPARENT TESTA16, TT16  gene TT16  function Encodes a MADS box protein. Regulates proanthocyanidin biosynthesis in the inner-most cell layer of the seed coat. Also controls cell shape of the inner-most cell layer of the seed coat. Also shown to be necessary for determining the identity of the endothelial layer within the ovule.  go_component nucleus|GO:0005634||IEA  go_process regulation of cell shape|GO:0008360|12368498|IMP  go_process proanthocyanidin biosynthetic process|GO:0010023|12368498|IMP  go_process seed development|GO:0048316|16925602|IMP  go_process ovule development|GO:0048481|16925602|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12368498|IMP  go_function transcription factor activity|GO:0003700|12368498|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product TT16 (TRANSPARENT TESTA16); transcription factor  note AGAMOUS-LIKE 32 (AGL32); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of cell shape, seed development, proanthocyanidin biosynthetic process, ovule development; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGL21; transcription factor (TAIR:AT4G37940.1); Has 4971 Blast hits to 4970 proteins in 677 species: Archae - 0; Bacteria - 0; Metazoa - 548; Fungi - 201; Plants - 4162; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT5G23260.1p  transcript_id AT5G23260.1  protein_id AT5G23260.1p  transcript_id AT5G23260.1  
At5g23260	chr5:007836442	0.0	W/7836442-7836629,7837386-7837455,7837566-7837730,7837961-7838002,7838089-7838340	AT5G23260.3  CDS  gene_syn ABS, AGAMOUS-LIKE 32, AGL32, ARABIDOPSIS BSISTER, MKD15.12, MKD15_12, TRANSPARENT TESTA16, TT16  gene TT16  function Encodes a MADS box protein. Regulates proanthocyanidin biosynthesis in the inner-most cell layer of the seed coat. Also controls cell shape of the inner-most cell layer of the seed coat. Also shown to be necessary for determining the identity of the endothelial layer within the ovule.  go_component nucleus|GO:0005634||IEA  go_process regulation of cell shape|GO:0008360|12368498|IMP  go_process proanthocyanidin biosynthetic process|GO:0010023|12368498|IMP  go_process seed development|GO:0048316|16925602|IMP  go_process ovule development|GO:0048481|16925602|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12368498|IMP  go_function transcription factor activity|GO:0003700|12368498|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product TT16 (TRANSPARENT TESTA16); transcription factor  note TRANSPARENT TESTA16 (TT16); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of cell shape, seed development, proanthocyanidin biosynthetic process, ovule development; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGL15 (AGAMOUS-LIKE 15); DNA binding / transcription factor (TAIR:AT5G13790.1); Has 4889 Blast hits to 4888 proteins in 667 species: Archae - 0; Bacteria - 0; Metazoa - 548; Fungi - 201; Plants - 4086; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT5G23260.3p  transcript_id AT5G23260.3  protein_id AT5G23260.3p  transcript_id AT5G23260.3  
At5g23270	chr5:007839132	0.0	W/7839132-7839267,7839354-7840309,7840422-7840874	AT5G23270.1  CDS  gene_syn ATSTP11, MKD15.13, MKD15_13, STP11, SUGAR TRANSPORTER 11  gene STP11  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product STP11 (SUGAR TRANSPORTER 11); carbohydrate transmembrane transporter/ sugar:hydrogen symporter  note SUGAR TRANSPORTER 11 (STP11); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: STP9 (SUGAR TRANSPORTER 9); carbohydrate transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT1G50310.1); Has 16883 Blast hits to 16548 proteins in 1108 species: Archae - 229; Bacteria - 6284; Metazoa - 3430; Fungi - 4558; Plants - 1324; Viruses - 0; Other Eukaryotes - 1058 (source: NCBI BLink).  protein_id AT5G23270.1p  transcript_id AT5G23270.1  protein_id AT5G23270.1p  transcript_id AT5G23270.1  
At5g23280	chr5:007843017	0.0	W/7843017-7843769	AT5G23280.1  CDS  gene_syn MKD15.14, MKD15_14  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product TCP family transcription factor, putative  note TCP family transcription factor, putative; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor, putative (TAIR:AT5G08330.1); Has 679 Blast hits to 678 proteins in 154 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 0; Plants - 639; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT5G23280.1p  transcript_id AT5G23280.1  protein_id AT5G23280.1p  transcript_id AT5G23280.1  
At5g23290	chr5:007846144	0.0	W/7846144-7846327,7846399-7846502,7846586-7846663,7847339-7847428	AT5G23290.1  CDS  gene_syn MKD15.15, MKD15_15, PDF5, PREFOLDIN 5  gene PDF5  go_component prefoldin complex|GO:0016272||IEA  go_process protein folding|GO:0006457||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component prefoldin complex|GO:0016272||ISS  go_process protein folding|GO:0006457||ISS  product PDF5 (PREFOLDIN 5); unfolded protein binding  note PREFOLDIN 5 (PDF5); FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding; LOCATED IN: prefoldin complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin alpha-like (InterPro:IPR004127), Prefoldin (InterPro:IPR009053), Prefoldin alpha subunit (InterPro:IPR011599); Has 365 Blast hits to 365 proteins in 170 species: Archae - 46; Bacteria - 3; Metazoa - 137; Fungi - 83; Plants - 26; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT5G23290.1p  transcript_id AT5G23290.1  protein_id AT5G23290.1p  transcript_id AT5G23290.1  
At5g23300	chr5:007850094	0.0	C/7850094-7850243,7849810-7849892,7849350-7849673,7849007-7849262,7848728-7848916,7848617-7848646,7848286-7848423,7848149-7848186,7847960-7848059,7847792-7847866	AT5G23300.1  CDS  gene_syn DIHYDROOROTATE DEHYDROGENASE, MKD15.16, MKD15_16, PYRD, pyrimidine d  gene PYRD  function dihydroorotate dehydrogenase, catalyses fourth step of pyrimidine biosynthesis  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process  de novo  pyrimidine base biosynthetic process|GO:0006207||ISS  go_process pyrimidine ribonucleotide biosynthetic process|GO:0009220|12372626|IDA  go_process pyrimidine ribonucleotide biosynthetic process|GO:0009220|1303803|IGI  go_function dihydroorotate dehydrogenase activity|GO:0004152|12372626|IDA  go_function dihydroorotate dehydrogenase activity|GO:0004152|1303803|IGI  go_function dihydroorotate dehydrogenase activity|GO:0004152||ISS  product PYRD (pyrimidine d); dihydroorotate dehydrogenase  note pyrimidine d (PYRD); FUNCTIONS IN: dihydroorotate dehydrogenase activity; INVOLVED IN: pyrimidine ribonucleotide biosynthetic process,  de novo  pyrimidine base biosynthetic process; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Dihydroorotate dehydrogenase, conserved site (InterPro:IPR001295), Aldolase-type TIM barrel (InterPro:IPR013785), Dihydroorotate dehydrogenase, class 2 (InterPro:IPR005719), Dihydroorotate dehydrogenase, classes 1 and 2 (InterPro:IPR012135); Has 6515 Blast hits to 6515 proteins in 1442 species: Archae - 136; Bacteria - 2971; Metazoa - 173; Fungi - 133; Plants - 27; Viruses - 0; Other Eukaryotes - 3075 (source: NCBI BLink).  protein_id AT5G23300.1p  transcript_id AT5G23300.1  protein_id AT5G23300.1p  transcript_id AT5G23300.1  
At5g23310	chr5:007850624	0.0	W/7850624-7850710,7850809-7850898,7851177-7851368,7851457-7851628,7851730-7851803,7851882-7851908,7851997-7852020,7852116-7852241	AT5G23310.1  CDS  gene_syn FE SUPEROXIDE DISMUTASE 3, FSD3, MKD15.17, MKD15_17  gene FSD3  function Fe superoxide dismutase  go_component nucleoid|GO:0009295|16326926|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|9765550|IDA  go_process removal of superoxide radicals|GO:0019430|9765550|IC  go_function superoxide dismutase activity|GO:0004784|9765550|IDA  product FSD3 (FE SUPEROXIDE DISMUTASE 3); superoxide dismutase  note FE SUPEROXIDE DISMUTASE 3 (FSD3); FUNCTIONS IN: superoxide dismutase activity; INVOLVED IN: removal of superoxide radicals; LOCATED IN: chloroplast, nucleoid; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Manganese and iron superoxide dismutase (InterPro:IPR001189); BEST Arabidopsis thaliana protein match is: FSD2 (FE SUPEROXIDE DISMUTASE 2); superoxide dismutase (TAIR:AT5G51100.1); Has 7947 Blast hits to 7946 proteins in 2193 species: Archae - 145; Bacteria - 5074; Metazoa - 348; Fungi - 601; Plants - 258; Viruses - 1; Other Eukaryotes - 1520 (source: NCBI BLink).  protein_id AT5G23310.1p  transcript_id AT5G23310.1  protein_id AT5G23310.1p  transcript_id AT5G23310.1  
At5g23320	chr5:007853368	0.0	W/7853368-7853961	AT5G23320.1  CDS  gene_syn ARABIDOPSIS HOMOLOG OF YEAST STE14 A, ARABIDOPSIS THALIANA ISOPRENYL CYSTEINE METHYLTRANSFERASE A, ATICMTA, ATPCM, ATSTE14, ATSTE14A, ICMTA, ISOPRENYL CYSTEINE METHYLTRANSFERASE A, LPHA-CARBOXYL METHYLTRANSFERASE, MKD15.18, MKD15_18, PRENYLCYSTEINE ALPHA-CARBOXYL METHYLTRANSFERASE, STE14  gene ATSTE14A  function Encodes a prenylcysteine alpha-carboxyl methyltransferase involved in methylation of isoprenylated proteins. This protein appears to have lower catalytic activity and a lower transcript expression level than the other ICMT present in Arabidopsis (At5g08335). Analysis of ICMT RNAi lines suggests that this protein may be involved in flower and stem development.  go_component endoplasmic reticulum|GO:0005783|18641086|IDA  go_process C-terminal protein amino acid methylation|GO:0006481|11352465|IDA  go_process C-terminal protein amino acid methylation|GO:0006481|18641086|IMP  go_process C-terminal protein amino acid methylation|GO:0006481||ISS  go_process negative regulation of abscisic acid mediated signaling|GO:0009788|12472689|NAS  go_process flower development|GO:0009908|18641086|IMP  go_process shoot development|GO:0048367|18641086|IMP  go_function protein-S-isoprenylcysteine O-methyltransferase activity|GO:0004671|11352465|IDA  go_function protein-S-isoprenylcysteine O-methyltransferase activity|GO:0004671|11352465|IGI  go_function protein-S-isoprenylcysteine O-methyltransferase activity|GO:0004671|12472689|IDA  go_function protein-S-isoprenylcysteine O-methyltransferase activity|GO:0004671|12472689|IGI  go_function protein-S-isoprenylcysteine O-methyltransferase activity|GO:0004671||ISS  go_function carboxyl-O-methyltransferase activity|GO:0010340|18641086|IMP  product ATSTE14A (ARABIDOPSIS HOMOLOG OF YEAST STE14 A); carboxyl-O-methyltransferase/ protein-S-isoprenylcysteine O-methyltransferase  note ARABIDOPSIS HOMOLOG OF YEAST STE14 A (ATSTE14A); FUNCTIONS IN: protein-S-isoprenylcysteine O-methyltransferase activity, carboxyl-O-methyltransferase activity; INVOLVED IN: flower development, shoot development, negative regulation of abscisic acid mediated signaling, C-terminal protein amino acid methylation; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 12 plant structures; CONTAINS InterPro DOMAIN/s: Isoprenylcysteine carboxyl methyltransferase (InterPro:IPR007269); BEST Arabidopsis thaliana protein match is: ATSTE14B; protein-S-isoprenylcysteine O-methyltransferase (TAIR:AT5G08335.1); Has 793 Blast hits to 793 proteins in 290 species: Archae - 20; Bacteria - 332; Metazoa - 105; Fungi - 108; Plants - 36; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).  protein_id AT5G23320.1p  transcript_id AT5G23320.1  protein_id AT5G23320.1p  transcript_id AT5G23320.1  
At5g23330	chr5:007854194	0.0	W/7854194-7854390,7854570-7854622,7854716-7854851,7854986-7855161,7855236-7855738	AT5G23330.1  CDS  gene_syn MKD15.19, MKD15_19  go_process riboflavin biosynthetic process|GO:0009231||IEA  go_function FMN adenylyltransferase activity|GO:0003919||IEA  product riboflavin biosynthesis protein-related  note riboflavin biosynthesis protein-related; FUNCTIONS IN: FMN adenylyltransferase activity; INVOLVED IN: riboflavin biosynthetic process; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), FAD synthetase (InterPro:IPR015864); BEST Arabidopsis thaliana protein match is: riboflavin biosynthesis protein-related (TAIR:AT5G08340.1); Has 2811 Blast hits to 2811 proteins in 943 species: Archae - 0; Bacteria - 2024; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 761 (source: NCBI BLink).  protein_id AT5G23330.1p  transcript_id AT5G23330.1  protein_id AT5G23330.1p  transcript_id AT5G23330.1  
At5g23340	chr5:007856314	0.0	W/7856314-7856641,7857094-7857983	AT5G23340.1  CDS  gene_syn MKD15.20, MKD15_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: F-box family protein (FBL4) (TAIR:AT4G15475.1); Has 9095 Blast hits to 3545 proteins in 210 species: Archae - 0; Bacteria - 454; Metazoa - 4575; Fungi - 774; Plants - 2118; Viruses - 15; Other Eukaryotes - 1159 (source: NCBI BLink).  protein_id AT5G23340.1p  transcript_id AT5G23340.1  protein_id AT5G23340.1p  transcript_id AT5G23340.1  
At5g23350	chr5:007858545	0.0	C/7858545-7859387	AT5G23350.1  CDS  gene_syn MKD15.21, MKD15_21  go_process biological_process|GO:0008150||ND  product GRAM domain-containing protein / ABA-responsive protein-related  note GRAM domain-containing protein / ABA-responsive protein-related; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182); BEST Arabidopsis thaliana protein match is: GRAM domain-containing protein / ABA-responsive protein-related (TAIR:AT5G23370.1); Has 196 Blast hits to 196 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 196; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G23350.1p  transcript_id AT5G23350.1  protein_id AT5G23350.1p  transcript_id AT5G23350.1  
At5g23360	chr5:007861817	0.0	W/7861817-7862449	AT5G23360.1  CDS  gene_syn MKD15.22, MKD15_22  go_process biological_process|GO:0008150||ND  product GRAM domain-containing protein / ABA-responsive protein-related  note GRAM domain-containing protein / ABA-responsive protein-related; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182); BEST Arabidopsis thaliana protein match is: GRAM domain-containing protein / ABA-responsive protein-related (TAIR:AT5G23350.1); Has 196 Blast hits to 196 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 196; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G23360.1p  transcript_id AT5G23360.1  protein_id AT5G23360.1p  transcript_id AT5G23360.1  
At5g23370	chr5:007863542	0.0	C/7863542-7864201	AT5G23370.1  CDS  gene_syn MKD15.23, MKD15_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product GRAM domain-containing protein / ABA-responsive protein-related  note GRAM domain-containing protein / ABA-responsive protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182); BEST Arabidopsis thaliana protein match is: GRAM domain-containing protein / ABA-responsive protein-related (TAIR:AT5G23350.1); Has 196 Blast hits to 196 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 196; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G23370.1p  transcript_id AT5G23370.1  protein_id AT5G23370.1p  transcript_id AT5G23370.1  
At5g23380	chr5:007866742	0.0	W/7866742-7866822,7867866-7868101,7868352-7868514,7868619-7868704,7868952-7869043,7869851-7870098	AT5G23380.1  CDS  gene_syn T32G24.1, T32G24_1  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03610.1); Has 148 Blast hits to 148 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 146; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G23380.1p  transcript_id AT5G23380.1  protein_id AT5G23380.1p  transcript_id AT5G23380.1  
At5g23390	chr5:007874075	0.0	C/7874075-7874283,7873654-7873888,7873468-7873554,7873209-7873378,7872620-7872759,7872299-7872470,7871596-7872187,7871407-7871519,7871041-7871284,7870719-7870949	AT5G23390.1  CDS  gene_syn T32G24.2, T32G24_2  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF639 (InterPro:IPR006927); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48840.1); Has 83 Blast hits to 81 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G23390.1p  transcript_id AT5G23390.1  protein_id AT5G23390.1p  transcript_id AT5G23390.1  
At5g23395	chr5:007875962	0.0	C/7875962-7876091,7875592-7875629,7875377-7875502,7874848-7875042	AT5G23395.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625); Has 224 Blast hits to 224 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 109; Fungi - 94; Plants - 20; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G23395.1p  transcript_id AT5G23395.1  protein_id AT5G23395.1p  transcript_id AT5G23395.1  
At5g23400	chr5:007880603	0.0	W/7880603-7882372	AT5G23400.1  CDS  gene_syn K19M13.1, K19M13_1  go_component cell wall|GO:0005618|14595688|IDA  go_component cell wall|GO:0005618|15593128|IDA  go_process defense response|GO:0006952||ISS  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product disease resistance family protein / LRR family protein  note disease resistance family protein / LRR family protein; FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction, defense response; LOCATED IN: cell wall; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT1G33600.1); Has 65319 Blast hits to 21698 proteins in 820 species: Archae - 33; Bacteria - 4034; Metazoa - 25349; Fungi - 927; Plants - 30158; Viruses - 6; Other Eukaryotes - 4812 (source: NCBI BLink).  protein_id AT5G23400.1p  transcript_id AT5G23400.1  protein_id AT5G23400.1p  transcript_id AT5G23400.1  
At5g23405	chr5:007884200	0.0	C/7884200-7884243,7883966-7884048,7883829-7883877,7883678-7883719,7883545-7883599,7883393-7883437,7883269-7883307,7883097-7883186	AT5G23405.2  CDS  go_component nucleus|GO:0005634||IEA  go_function DNA binding|GO:0003677||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product high mobility group (HMG1/2) family protein  note high mobility group (HMG1/2) family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: HMGB6; transcription factor (TAIR:AT5G23420.1); Has 569 Blast hits to 533 proteins in 111 species: Archae - 0; Bacteria - 10; Metazoa - 244; Fungi - 37; Plants - 158; Viruses - 7; Other Eukaryotes - 113 (source: NCBI BLink).  protein_id AT5G23405.2p  transcript_id AT5G23405.2  protein_id AT5G23405.2p  transcript_id AT5G23405.2  
At5g23405	chr5:007884200	0.0	C/7884200-7884243,7883966-7884048,7883829-7883880,7883678-7883719,7883545-7883599,7883393-7883437,7883269-7883307,7883097-7883186	AT5G23405.1  CDS  go_component nucleus|GO:0005634||IEA  go_function DNA binding|GO:0003677||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product high mobility group (HMG1/2) family protein  note high mobility group (HMG1/2) family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: HMGB6; transcription factor (TAIR:AT5G23420.1); Has 524 Blast hits to 488 proteins in 110 species: Archae - 0; Bacteria - 10; Metazoa - 200; Fungi - 37; Plants - 158; Viruses - 7; Other Eukaryotes - 112 (source: NCBI BLink).  protein_id AT5G23405.1p  transcript_id AT5G23405.1  protein_id AT5G23405.1p  transcript_id AT5G23405.1  
At5g23410	chr5:007886178	0.0	C/7886178-7886238,7885794-7885987	AT5G23410.1  CDS  gene_syn K19M13.3, K19M13_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: FKF1 (FLAVIN-BINDING, KELCH REPEAT, F BOX 1); signal transducer/ two-component sensor/ ubiquitin-protein ligase (TAIR:AT1G68050.1); Has 53 Blast hits to 53 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G23410.1p  transcript_id AT5G23410.1  protein_id AT5G23410.1p  transcript_id AT5G23410.1  
At5g23411	chr5:007886644	0.0	W/7886644-7886790	AT5G23411.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G23411.1p  transcript_id AT5G23411.1  protein_id AT5G23411.1p  transcript_id AT5G23411.1  
At5g23413	chr5:007886971	0.0	C/7886971-7887685	AT5G23413.1  pseudogenic_transcript  pseudo  function unknown pseudogene  
At5g23420	chr5:007889990	0.0	C/7889990-7890111,7889760-7889842,7889610-7889661,7889414-7889533,7889274-7889328,7889134-7889178,7888959-7889042,7888712-7888876	AT5G23420.1  CDS  gene_syn HIGH-MOBILITY GROUP BOX 6, HMGB6, K19M13.4, K19M13_4  gene HMGB6  function Encodes HMGB6, a protein belonging to the subgroup of HMGB (high mobility group B) proteins. Localized in the nucleus. Binds to supercoiled DNA in vitro. HMGB6 is phosphorylated by protein kinase CK2alpha within its acidic C-terminal domain.  go_component nucleus|GO:0005634|14756567|IDA  go_function DNA binding|GO:0003677|14756567|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  product HMGB6; transcription factor  note HIGH-MOBILITY GROUP BOX 6 (HMGB6); FUNCTIONS IN: transcription factor activity, DNA binding; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: high mobility group (HMG1/2) family protein (TAIR:AT5G23405.1); Has 28981 Blast hits to 14762 proteins in 733 species: Archae - 34; Bacteria - 1293; Metazoa - 13417; Fungi - 2650; Plants - 1243; Viruses - 476; Other Eukaryotes - 9868 (source: NCBI BLink).  protein_id AT5G23420.1p  transcript_id AT5G23420.1  protein_id AT5G23420.1p  transcript_id AT5G23420.1  
At5g23430	chr5:007899835	0.0	C/7899835-7899862,7899396-7899526,7899171-7899288,7898852-7899078,7898211-7898313,7897702-7897772,7897550-7897624,7897233-7897376,7896794-7897139,7896186-7896698,7895886-7895945,7895689-7895810,7895284-7895418,7894885-7894959,7894688-7894800,7894399-7894515,7894224-7894292,7894073-7894136	AT5G23430.2  CDS  gene_syn K19M13.6, K19M13_6  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08390.1); Has 83704 Blast hits to 30449 proteins in 747 species: Archae - 66; Bacteria - 7965; Metazoa - 39599; Fungi - 16180; Plants - 7837; Viruses - 6; Other Eukaryotes - 12051 (source: NCBI BLink).  protein_id AT5G23430.2p  transcript_id AT5G23430.2  protein_id AT5G23430.2p  transcript_id AT5G23430.2  
At5g23430	chr5:007899835	0.0	C/7899835-7899862,7899396-7899526,7899171-7899288,7898852-7899078,7898211-7898313,7897702-7897772,7897550-7897624,7897233-7897376,7896794-7897139,7896186-7896698,7895886-7895945,7895689-7895810,7895284-7895418,7894885-7894959,7894688-7894800,7894399-7894515,7894224-7894292,7894073-7894139	AT5G23430.1  CDS  gene_syn K19M13.6, K19M13_6  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08390.1); Has 83756 Blast hits to 30447 proteins in 747 species: Archae - 66; Bacteria - 7991; Metazoa - 39596; Fungi - 16201; Plants - 7845; Viruses - 6; Other Eukaryotes - 12051 (source: NCBI BLink).  protein_id AT5G23430.1p  transcript_id AT5G23430.1  protein_id AT5G23430.1p  transcript_id AT5G23430.1  
At5g23440	chr5:007903230	0.0	C/7903230-7903778	AT5G23440.1  CDS  gene_syn FTRA1, K19M13.7, K19M13_7, ferredoxin/thioredoxin reductase subunit A (variable subunit) 1  gene FTRA1  go_component chloroplast|GO:0009507|18431481|IDA  go_process lipoate biosynthetic process|GO:0009107||IEA  go_process photosynthesis|GO:0015979||IEA  go_function catalytic activity|GO:0003824||IEA  go_function ferredoxin reductase activity|GO:0008937||IEA  go_function lipoate synthase activity|GO:0016992||IEA  go_process photosynthesis, light reaction|GO:0019684||ISS  go_function ferredoxin:thioredoxin reductase activity|GO:0030385||ISS  product FTRA1 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 1); catalytic/ ferredoxin reductase/ ferredoxin:thioredoxin reductase/ lipoate synthase  note ferredoxin/thioredoxin reductase subunit A (variable subunit) 1 (FTRA1); FUNCTIONS IN: ferredoxin:thioredoxin reductase activity, lipoate synthase activity, catalytic activity, ferredoxin reductase activity; INVOLVED IN: photosynthesis, light reaction, lipoate biosynthetic process, photosynthesis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipoate synthase (InterPro:IPR003698), Ferredoxin thioredoxin reductase, alpha chain (InterPro:IPR004207), Electron transport accessory protein (InterPro:IPR008990); BEST Arabidopsis thaliana protein match is: FTRA2 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 2); catalytic/ ferredoxin reductase/ ferredoxin:thioredoxin reductase/ lipoate synthase (TAIR:AT5G08410.1); Has 111 Blast hits to 111 proteins in 43 species: Archae - 0; Bacteria - 63; Metazoa - 0; Fungi - 1; Plants - 46; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G23440.1p  transcript_id AT5G23440.1  protein_id AT5G23440.1p  transcript_id AT5G23440.1  
At5g23450	chr5:007908508	0.0	C/7908508-7908960,7908050-7908424,7907803-7907896,7907650-7907687,7907043-7907189,7906827-7906926,7905333-7906267,7905041-7905190	AT5G23450.1  CDS  gene_syn A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1, ATLCBK1, K19M13.8, K19M13_8, SPHINGOSINE KINASE  gene ATLCBK1  function Encodes a sphingosine kinase that specifically phosphorylates D-erythro-dihydrosphingosine (DHS), but not N-acetyl-DHS or D-threo-DHS. It also also phosphorylates D-erythro-sphingosine, trans-4, trans-8-sphingadienine and phytosphingosine.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|GO:0007205||ISS  go_process sphingolipid biosynthetic process|GO:0030148|15695468|IDA  go_function diacylglycerol kinase activity|GO:0004143||ISS  go_function D-erythro-sphingosine kinase activity|GO:0017050|15695468|IDA  product ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1); D-erythro-sphingosine kinase/ diacylglycerol kinase  note A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1 (ATLCBK1); FUNCTIONS IN: diacylglycerol kinase activity, D-erythro-sphingosine kinase activity; INVOLVED IN: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway, sphingolipid biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Diacylglycerol kinase, catalytic region (InterPro:IPR001206); BEST Arabidopsis thaliana protein match is: SPHK1 (SPHINGOSINE KINASE 1); D-erythro-sphingosine kinase/ diacylglycerol kinase/ sphinganine kinase (TAIR:AT4G21540.2); Has 2281 Blast hits to 2143 proteins in 534 species: Archae - 2; Bacteria - 1158; Metazoa - 480; Fungi - 121; Plants - 153; Viruses - 0; Other Eukaryotes - 367 (source: NCBI BLink).  protein_id AT5G23450.1p  transcript_id AT5G23450.1  protein_id AT5G23450.1p  transcript_id AT5G23450.1  
At5g23450	chr5:007908508	0.0	C/7908508-7908960,7908050-7908424,7907803-7907896,7907650-7907687,7907043-7907189,7906827-7906926,7905333-7906267,7905041-7905190	AT5G23450.2  CDS  gene_syn A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1, ATLCBK1, K19M13.8, K19M13_8, SPHINGOSINE KINASE  gene ATLCBK1  function Encodes a sphingosine kinase that specifically phosphorylates D-erythro-dihydrosphingosine (DHS), but not N-acetyl-DHS or D-threo-DHS. It also also phosphorylates D-erythro-sphingosine, trans-4, trans-8-sphingadienine and phytosphingosine.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|GO:0007205||ISS  go_process sphingolipid biosynthetic process|GO:0030148|15695468|IDA  go_function diacylglycerol kinase activity|GO:0004143||ISS  go_function D-erythro-sphingosine kinase activity|GO:0017050|15695468|IDA  product ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1); D-erythro-sphingosine kinase/ diacylglycerol kinase  note A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1 (ATLCBK1); FUNCTIONS IN: diacylglycerol kinase activity, D-erythro-sphingosine kinase activity; INVOLVED IN: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway, sphingolipid biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Diacylglycerol kinase, catalytic region (InterPro:IPR001206); BEST Arabidopsis thaliana protein match is: SPHK1 (SPHINGOSINE KINASE 1); D-erythro-sphingosine kinase/ diacylglycerol kinase/ sphinganine kinase (TAIR:AT4G21540.2); Has 2281 Blast hits to 2143 proteins in 534 species: Archae - 2; Bacteria - 1158; Metazoa - 480; Fungi - 121; Plants - 153; Viruses - 0; Other Eukaryotes - 367 (source: NCBI BLink).  protein_id AT5G23450.2p  transcript_id AT5G23450.2  protein_id AT5G23450.2p  transcript_id AT5G23450.2  
At5g23450	chr5:007908508	0.0	C/7908508-7908960,7908050-7908424,7907803-7907896,7907650-7907687,7907263-7907307,7907043-7907189,7906827-7906926,7905333-7906267,7905041-7905190	AT5G23450.3  CDS  gene_syn A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1, ATLCBK1, K19M13.8, K19M13_8, SPHINGOSINE KINASE  gene ATLCBK1  function Encodes a sphingosine kinase that specifically phosphorylates D-erythro-dihydrosphingosine (DHS), but not N-acetyl-DHS or D-threo-DHS. It also also phosphorylates D-erythro-sphingosine, trans-4, trans-8-sphingadienine and phytosphingosine.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|GO:0007205||ISS  go_process sphingolipid biosynthetic process|GO:0030148|15695468|IDA  go_function diacylglycerol kinase activity|GO:0004143||ISS  go_function D-erythro-sphingosine kinase activity|GO:0017050|15695468|IDA  product ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1); D-erythro-sphingosine kinase/ diacylglycerol kinase  note A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1 (ATLCBK1); FUNCTIONS IN: diacylglycerol kinase activity, D-erythro-sphingosine kinase activity; INVOLVED IN: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway, sphingolipid biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Diacylglycerol kinase, catalytic region (InterPro:IPR001206); BEST Arabidopsis thaliana protein match is: SPHK1 (SPHINGOSINE KINASE 1); D-erythro-sphingosine kinase/ diacylglycerol kinase/ sphinganine kinase (TAIR:AT4G21540.2); Has 2162 Blast hits to 2116 proteins in 532 species: Archae - 2; Bacteria - 1119; Metazoa - 461; Fungi - 121; Plants - 130; Viruses - 0; Other Eukaryotes - 329 (source: NCBI BLink).  protein_id AT5G23450.3p  transcript_id AT5G23450.3  protein_id AT5G23450.3p  transcript_id AT5G23450.3  
At5g23460	chr5:007913072	0.0	W/7913072-7913407	AT5G23460.1  CDS  gene_syn K19M13.9, K19M13_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G23460.1p  transcript_id AT5G23460.1  protein_id AT5G23460.1p  transcript_id AT5G23460.1  
At5g23470	chr5:007913861	0.0	W/7913861-7914769	AT5G23470.1  CDS  gene_syn K19M13.10, K19M13_10  go_component nucleus|GO:0005634||IEA  go_function phosphoprotein phosphatase activity|GO:0004721||IEA  go_process biological_process|GO:0008150||ND  product NLI interacting factor (NIF) family protein  note NLI interacting factor (NIF) family protein; FUNCTIONS IN: phosphoprotein phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: FCP1-like phosphatase, phosphatase domain (InterPro:IPR011947), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: NLI interacting factor (NIF) family protein (TAIR:AT2G02290.1); Has 890 Blast hits to 890 proteins in 154 species: Archae - 0; Bacteria - 0; Metazoa - 248; Fungi - 128; Plants - 134; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink).  protein_id AT5G23470.1p  transcript_id AT5G23470.1  protein_id AT5G23470.1p  transcript_id AT5G23470.1  
At5g23480	chr5:007916314	0.0	W/7916314-7916914,7917043-7917152,7917435-7917494,7917675-7917713,7918061-7918537,7918731-7919155	AT5G23480.1  CDS  gene_syn K19M13.11, K19M13_11  go_component nucleus|GO:0005634||IEA  go_process transcription initiation|GO:0006352||IEA  go_process histone modification|GO:0016570||IEA  go_function DNA binding|GO:0003677||IEA  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: histone modification, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Plus-3 domain, subgroup (InterPro:IPR018144), SWIB/MDM2 (InterPro:IPR003121), Plus-3 (InterPro:IPR004343), GYF (InterPro:IPR003169); BEST Arabidopsis thaliana protein match is: SWIB complex BAF60b domain-containing protein / plus-3 domain-containing protein / GYF domain-containing protein (TAIR:AT5G08430.1); Has 28 Blast hits to 28 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G23480.1p  transcript_id AT5G23480.1  protein_id AT5G23480.1p  transcript_id AT5G23480.1  
At5g23490	chr5:007919831	0.0	W/7919831-7919983,7920282-7920344,7920544-7920839,7920956-7921055,7921135-7921212,7921748-7921807,7921910-7922014,7922296-7922406,7922849-7922890,7923037-7923150,7923228-7923367,7924114-7924352,7924423-7924544,7924630-7924672,7924756-7924847,7925133-7925181,7925394-7925464,7925550-7925663,7925837-7925937,7926249-7926294,7926449-7926499	AT5G23490.1  CDS  gene_syn AT5G23500, K19M13.12, K19M13_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08440.1); Has 141 Blast hits to 137 proteins in 32 species: Archae - 0; Bacteria - 7; Metazoa - 26; Fungi - 4; Plants - 60; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT5G23490.1p  transcript_id AT5G23490.1  protein_id AT5G23490.1p  transcript_id AT5G23490.1  
At5g23510	chr5:007927266	0.0	W/7927266-7927377,7927457-7927578,7927663-7927705,7927790-7927881,7928070-7928118,7928345-7928415,7928499-7928612,7928734-7928831,7928902-7928947,7929061-7929117	AT5G23510.2  CDS  gene_syn MQM1.23, MQM1_23  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23490.1); Has 48 Blast hits to 48 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G23510.2p  transcript_id AT5G23510.2  protein_id AT5G23510.2p  transcript_id AT5G23510.2  
At5g23510	chr5:007927266	0.0	W/7927266-7927377,7927457-7927578,7927663-7927705,7927790-7927881,7928070-7928118,7928345-7928415,7928499-7928612,7928734-7928831,7928902-7929016	AT5G23510.1  CDS  gene_syn MQM1.23, MQM1_23  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23490.1); Has 48 Blast hits to 48 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G23510.1p  transcript_id AT5G23510.1  protein_id AT5G23510.1p  transcript_id AT5G23510.1  
At5g23520	chr5:007930533	0.0	C/7930533-7931296,7929927-7930336,7929743-7929812,7929591-7929654	AT5G23520.1  CDS  gene_syn MQM1.22, MQM1_22  go_component cytoplasm|GO:0005737|15610358|IDA  product unknown protein  note LOCATED IN: cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Smr protein/MutS2 C-terminal (InterPro:IPR002625), Region of unknown function DUF1771 (InterPro:IPR013899); Has 91 Blast hits to 91 proteins in 45 species: Archae - 0; Bacteria - 6; Metazoa - 8; Fungi - 45; Plants - 27; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G23520.1p  transcript_id AT5G23520.1  protein_id AT5G23520.1p  transcript_id AT5G23520.1  
At5g23530	chr5:007933366	0.0	C/7933366-7934373	AT5G23530.1  CDS  gene_syn Arabidopsis thaliana carboxyesterase 18, AtCXE18, MQM1.21, MQM1_21  gene AtCXE18  go_process metabolic process|GO:0008152||IEA  go_function carboxylesterase activity|GO:0004091|17270225|IDA  product AtCXE18 (Arabidopsis thaliana carboxyesterase 18); carboxylesterase  note Arabidopsis thaliana carboxyesterase 18 (AtCXE18); FUNCTIONS IN: carboxylesterase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: GID1C (GA INSENSITIVE DWARF1C); hydrolase (TAIR:AT5G27320.1); Has 6262 Blast hits to 6252 proteins in 931 species: Archae - 51; Bacteria - 3225; Metazoa - 533; Fungi - 677; Plants - 640; Viruses - 3; Other Eukaryotes - 1133 (source: NCBI BLink).  protein_id AT5G23530.1p  transcript_id AT5G23530.1  protein_id AT5G23530.1p  transcript_id AT5G23530.1  
At5g23535	chr5:007935871	0.0	W/7935871-7935930,7936021-7936116,7936512-7936615,7936704-7936840,7937045-7937127	AT5G23535.1  CDS  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product KOW domain-containing protein  note KOW domain-containing protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Ribosomal protein L24/L26, conserved site (InterPro:IPR005825), KOW (InterPro:IPR005824), Ribosomal protein L24 (InterPro:IPR003256); BEST Arabidopsis thaliana protein match is: 50S ribosomal protein L24, chloroplast (CL24) (TAIR:AT5G54600.1); Has 5065 Blast hits to 5065 proteins in 1474 species: Archae - 5; Bacteria - 2995; Metazoa - 127; Fungi - 8; Plants - 67; Viruses - 0; Other Eukaryotes - 1863 (source: NCBI BLink).  protein_id AT5G23535.1p  transcript_id AT5G23535.1  protein_id AT5G23535.1p  transcript_id AT5G23535.1  
At5g23540	chr5:007937772	0.0	W/7937772-7937901,7938092-7938269,7938361-7938442,7938624-7938800,7938892-7939059,7939148-7939339	AT5G23540.1  CDS  gene_syn MQM1.19, MQM1_19  go_process response to salt stress|GO:0009651|17916636|IEP  go_component nucleus|GO:0005634|11742986|TAS  go_component proteasome regulatory particle, lid subcomplex|GO:0008541||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_process protein catabolic process|GO:0030163|11742986|TAS  product 26S proteasome regulatory subunit, putative  note 26S proteasome regulatory subunit, putative; INVOLVED IN: response to salt stress, protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus, proteasome regulatory particle, lid subcomplex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: CSN5B (COP9-SIGNALOSOME 5B); protein binding (TAIR:AT1G71230.1); Has 1378 Blast hits to 1378 proteins in 184 species: Archae - 0; Bacteria - 0; Metazoa - 703; Fungi - 322; Plants - 187; Viruses - 0; Other Eukaryotes - 166 (source: NCBI BLink).  protein_id AT5G23540.1p  transcript_id AT5G23540.1  protein_id AT5G23540.1p  transcript_id AT5G23540.1  
At5g23540	chr5:007938109	0.0	W/7938109-7938269,7938361-7938442,7938624-7938800,7938892-7939059,7939148-7939339	AT5G23540.2  CDS  gene_syn MQM1.19, MQM1_19  go_process response to salt stress|GO:0009651|17916636|IEP  go_component nucleus|GO:0005634|11742986|TAS  go_component proteasome regulatory particle, lid subcomplex|GO:0008541||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_process protein catabolic process|GO:0030163|11742986|TAS  product 26S proteasome regulatory subunit, putative  note 26S proteasome regulatory subunit, putative; INVOLVED IN: response to salt stress, protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus, proteasome regulatory particle, lid subcomplex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: CSN5B (COP9-SIGNALOSOME 5B); protein binding (TAIR:AT1G71230.1); Has 1160 Blast hits to 1160 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 592; Fungi - 276; Plants - 150; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink).  protein_id AT5G23540.2p  transcript_id AT5G23540.2  protein_id AT5G23540.2p  transcript_id AT5G23540.2  
At5g23550	chr5:007941336	0.0	C/7941336-7941479,7940857-7940910,7940615-7940688,7940368-7940485,7940189-7940247,7939914-7939992	AT5G23550.1  CDS  gene_syn MQM1.18, MQM1_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SFT2-like (InterPro:IPR011691); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24170.1); Has 455 Blast hits to 455 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 195; Fungi - 96; Plants - 62; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).  protein_id AT5G23550.1p  transcript_id AT5G23550.1  protein_id AT5G23550.1p  transcript_id AT5G23550.1  
At5g23570	chr5:007943621	0.0	W/7943621-7944583,7944657-7944948,7945060-7945304,7945407-7945573,7945664-7945874	AT5G23570.1  CDS  gene_syn ATSGS3, MQM1.17, MQM1_17, SGS3, SUPPRESSOR OF GENE SILENCING 3  gene SGS3  function Required for posttranscriptional gene silencing and natural virus resistance.SGS3 is a member of an  unknown  protein family. Members of this family have predicted coiled coiled domains suggesting oligomerization and a potential zinc finger domain. Involved in the production of trans-acting siRNAs, through direct or indirect stabilization of cleavage fragments of the primary ta-siRNA transcript. Acts before RDR6 in this pathway.  go_process virus induced gene silencing|GO:0009616|10850495|IMP  go_process vegetative phase change|GO:0010050|15466488|IMP  go_process RNA interference, production of ta-siRNAs|GO:0010267|16131612|IMP  go_process RNA interference, production of ta-siRNAs|GO:0010267|16682354|IMP  go_process defense response to virus|GO:0051607|16682354|IMP  product SGS3 (SUPPRESSOR OF GENE SILENCING 3)  note SUPPRESSOR OF GENE SILENCING 3 (SGS3); INVOLVED IN: defense response to virus, vegetative phase change, RNA interference, production of ta-siRNAs, virus induced gene silencing; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Region of unknown function, putative Zinc finger, XS and XH (InterPro:IPR005381); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein / XS zinc finger domain-containing protein (TAIR:AT3G48670.2); Has 12033 Blast hits to 7900 proteins in 515 species: Archae - 40; Bacteria - 770; Metazoa - 4370; Fungi - 508; Plants - 234; Viruses - 113; Other Eukaryotes - 5998 (source: NCBI BLink).  protein_id AT5G23570.1p  transcript_id AT5G23570.1  protein_id AT5G23570.1p  transcript_id AT5G23570.1  
At5g23575	chr5:007946563	0.0	W/7946563-7946787,7947010-7947156,7947273-7947387,7947465-7947559,7947659-7947762,7948142-7948179,7948479-7948714,7948892-7948985,7949064-7949254,7949334-7949553,7949637-7949804,7949893-7950041	AT5G23575.1  CDS  go_component membrane|GO:0016020|17432890|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  product transmembrane protein, putative  note transmembrane protein, putative; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: callus, leaf; CONTAINS InterPro DOMAIN/s: Cleft lip and palate transmembrane 1 (InterPro:IPR008429); BEST Arabidopsis thaliana protein match is: transmembrane CLPTM1 family protein (TAIR:AT5G08500.1); Has 385 Blast hits to 385 proteins in 129 species: Archae - 0; Bacteria - 0; Metazoa - 216; Fungi - 50; Plants - 26; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT5G23575.1p  transcript_id AT5G23575.1  protein_id AT5G23575.1p  transcript_id AT5G23575.1  
At5g23580	chr5:007951905	0.0	C/7951905-7952433,7951528-7951671,7951290-7951442,7950934-7951217,7950610-7950834,7950388-7950525	AT5G23580.1  CDS  gene_syn ARABIDOPSIS THALIANA CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9, ATCDPK9, ATCPK12, CALCIUM-DEPENDENT PROTEIN KINASE, CALCIUM-DEPENDENT PROTEIN KINASE 12, CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9, CDPK9, CPK12  gene CDPK9  function unique family of enzymes containing a single polypeptide chain with a kinase domain at the amino terminus and a putative calcium-binding EF hands structure at the carboxyl terminus; recombinant protein is fully active and induced by Ca2+  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  go_function kinase activity|GO:0016301||ISS  product CDPK9 (CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9); ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase  note CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9 (CDPK9); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2); calmodulin-dependent protein kinase/ kinase (TAIR:AT1G35670.1); Has 98522 Blast hits to 91623 proteins in 2708 species: Archae - 76; Bacteria - 7909; Metazoa - 41708; Fungi - 12881; Plants - 15909; Viruses - 418; Other Eukaryotes - 19621 (source: NCBI BLink).  protein_id AT5G23580.1p  transcript_id AT5G23580.1  protein_id AT5G23580.1p  transcript_id AT5G23580.1  
At5g23590	chr5:007954262	0.0	C/7954262-7954936,7953992-7954174,7953870-7953902	AT5G23590.1  CDS  gene_syn MQM1.14, MQM1_14  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: GFA2 (GAMETOPHYTIC FACTOR 2); heat shock protein binding / unfolded protein binding (TAIR:AT5G48030.1); Has 11753 Blast hits to 11547 proteins in 1607 species: Archae - 76; Bacteria - 3773; Metazoa - 2690; Fungi - 1062; Plants - 639; Viruses - 13; Other Eukaryotes - 3500 (source: NCBI BLink).  protein_id AT5G23590.1p  transcript_id AT5G23590.1  protein_id AT5G23590.1p  transcript_id AT5G23590.1  
At5g23590	chr5:007954262	0.0	C/7954262-7954936,7953992-7954174,7953870-7953902	AT5G23590.2  CDS  gene_syn MQM1.14, MQM1_14  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: GFA2 (GAMETOPHYTIC FACTOR 2); heat shock protein binding / unfolded protein binding (TAIR:AT5G48030.1); Has 11753 Blast hits to 11547 proteins in 1607 species: Archae - 76; Bacteria - 3773; Metazoa - 2690; Fungi - 1062; Plants - 639; Viruses - 13; Other Eukaryotes - 3500 (source: NCBI BLink).  protein_id AT5G23590.2p  transcript_id AT5G23590.2  protein_id AT5G23590.2p  transcript_id AT5G23590.2  
At5g23600	chr5:007955994	0.0	W/7955994-7956632	AT5G23600.1  CDS  gene_syn MQM1.13, MQM1_13  go_process tRNA splicing, via endonucleolytic cleavage and ligation|GO:0006388||IEA  go_function transferase activity, transferring phosphorus-containing groups|GO:0016772||IEA  go_process tRNA splicing, via endonucleolytic cleavage and ligation|GO:0006388||ISS  go_function tRNA 2 -phosphotransferase activity|GO:0000215||ISS  product tRNA 2 phosphotransferase, putative  note tRNA 2 phosphotransferase, putative; FUNCTIONS IN: tRNA 2 -phosphotransferase activity, transferase activity, transferring phosphorus-containing groups; INVOLVED IN: tRNA splicing, via endonucleolytic cleavage and ligation; CONTAINS InterPro DOMAIN/s: Phosphotransferase KptA/Tpt1 (InterPro:IPR002745); BEST Arabidopsis thaliana protein match is: emb1067 (embryo defective 1067); tRNA 2 -phosphotransferase/ transferase, transferring phosphorus-containing groups (TAIR:AT2G45330.2); Has 534 Blast hits to 534 proteins in 255 species: Archae - 52; Bacteria - 248; Metazoa - 64; Fungi - 82; Plants - 16; Viruses - 6; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT5G23600.1p  transcript_id AT5G23600.1  protein_id AT5G23600.1p  transcript_id AT5G23600.1  
At5g23610	chr5:007959922	0.0	C/7959922-7959968,7959471-7959809,7959005-7959385,7958862-7958919,7958679-7958762,7958218-7958576,7958017-7958131,7957641-7957757	AT5G23610.1  CDS  gene_syn MQM1.12, MQM1_12  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: SWI1 (SWITCH1); phospholipase C (TAIR:AT5G51330.1); Has 107 Blast hits to 101 proteins in 23 species: Archae - 3; Bacteria - 6; Metazoa - 1; Fungi - 4; Plants - 61; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT5G23610.1p  transcript_id AT5G23610.1  protein_id AT5G23610.1p  transcript_id AT5G23610.1  
At5g23610	chr5:007959922	0.0	C/7959922-7959968,7959471-7959809,7959005-7959385,7958862-7958919,7958679-7958762,7958218-7958576,7958017-7958134,7957641-7957757	AT5G23610.2  CDS  gene_syn MQM1.12, MQM1_12  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: SWI1 (SWITCH1); phospholipase C (TAIR:AT5G51330.1); Has 113 Blast hits to 109 proteins in 23 species: Archae - 3; Bacteria - 8; Metazoa - 4; Fungi - 2; Plants - 60; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT5G23610.2p  transcript_id AT5G23610.2  protein_id AT5G23610.2p  transcript_id AT5G23610.2  
At5g23630	chr5:007967396	0.0	C/7967396-7967644,7967200-7967292,7966714-7966916,7966400-7966472,7966136-7966308,7965881-7966055,7965442-7965546,7965248-7965358,7965076-7965162,7964815-7964997,7964622-7964672,7964418-7964543,7964016-7964095,7963766-7963874,7963551-7963679,7963162-7963227,7962977-7963048,7962537-7962688,7962137-7962248,7961924-7962040,7960756-7961829	AT5G23630.1  CDS  gene_syn MQM1.11, MQM1_11  function A novel member of the eukaryotic type V subfamily (P5) of P-type ATPase cation pumps; MIA is most similar to the human P5 ATPase ATY2(44% identity) and to Spf1p from S. cerevisiae (41% identity). Highly abundant in the endoplasmic reticulum and small vesicles of developing pollen grains and tapetum cells. T-DNA insertional mutants of MIA suffer from imbalances in cation homeostasis and exhibit a severe reduction in fertility. Mutant microspores fail to separate from tetrads and pollen grains are fragile with an abnormal morphology and altered cell wall structure.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component endoplasmic reticulum|GO:0005783|16291648|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process cellular metal ion homeostasis|GO:0006875|16291648|IMP  go_process pollen germination|GO:0009846|16291648|IMP  go_process pollen maturation|GO:0010152|16291648|IMP  go_function cation-transporting ATPase activity|GO:0019829|16291648|IGI  go_function cation-transporting ATPase activity|GO:0019829||ISS  product ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase familiy protein  note ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase familiy protein; FUNCTIONS IN: cation-transporting ATPase activity; INVOLVED IN: pollen germination, cellular metal ion homeostasis, pollen maturation; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, unknown pump specificity (type V) (InterPro:IPR006544), ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: ACA2 (CALCIUM ATPASE 2); calcium ion transmembrane transporter/ calcium-transporting ATPase/ calmodulin binding (TAIR:AT4G37640.1); Has 12046 Blast hits to 11175 proteins in 1432 species: Archae - 267; Bacteria - 5249; Metazoa - 2735; Fungi - 1473; Plants - 689; Viruses - 3; Other Eukaryotes - 1630 (source: NCBI BLink).  protein_id AT5G23630.1p  transcript_id AT5G23630.1  protein_id AT5G23630.1p  transcript_id AT5G23630.1  
At5g23640	chr5:007968459	0.0	C/7968459-7968502,7968259-7968412	AT5G23640.1  CDS  gene_syn MQM1.10, MQM1_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G23640.1p  transcript_id AT5G23640.1  protein_id AT5G23640.1p  transcript_id AT5G23640.1  
At5g23650	chr5:007969812	0.0	W/7969812-7970194,7970389-7971019	AT5G23650.1  CDS  gene_syn MQM1.9, MQM1_9  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT5G08520.1); Has 784 Blast hits to 782 proteins in 64 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 720; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT5G23650.1p  transcript_id AT5G23650.1  protein_id AT5G23650.1p  transcript_id AT5G23650.1  
At5g23660	chr5:007973745	0.0	C/7973745-7973796,7973580-7973616,7973195-7973405,7972953-7973114,7972741-7972860,7971936-7972211	AT5G23660.1  CDS  gene_syn Arabidopsis homolog of Medicago truncatula MTN3, MQM1.8, MQM1_8, MTN3  gene MTN3  function homolog of the Medicago nodulin MTN3  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  product MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)  note Arabidopsis homolog of Medicago truncatula MTN3 (MTN3); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: MtN3 and saliva related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), MtN3 and saliva related transmembrane protein (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: nodulin MtN3 family protein (TAIR:AT3G48740.1); Has 597 Blast hits to 548 proteins in 96 species: Archae - 0; Bacteria - 6; Metazoa - 226; Fungi - 1; Plants - 292; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT5G23660.1p  transcript_id AT5G23660.1  protein_id AT5G23660.1p  transcript_id AT5G23660.1  
At5g23665	chr5:007981398	0.0	W/7981398-7981469	AT5G23665.1  tRNA  gene_syn 67662.TRNA-GLN-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gln (anticodon: TTG)  transcript_id AT5G23665.1  
At5g23670	chr5:007981889	0.0	W/7981889-7982014,7982117-7982182,7982337-7982425,7982622-7982767,7982841-7982965,7983065-7983158,7983245-7983408,7983649-7983810,7984135-7984261,7984380-7984546,7984664-7984771,7984942-7985037	AT5G23670.1  CDS  gene_syn LCB2, MQM1.6, MQM1_6, SERINE PALMITOYLTRANSFERASE  gene LCB2  function Encodes the LCB2 subunit of serine palmitoyltransferase, an enzyme involved in sphingosine biosynthesis. The protein is localized to the endoplasmic reticulum.  go_component vacuole|GO:0005773|14760709|IDA  go_component endoplasmic reticulum|GO:0005783|11726713|IDA  go_component membrane|GO:0016020|11726713|IDA  go_process pollen development|GO:0009555|18208516|IMP  go_process photomorphogenesis|GO:0009640|18208516|IMP  go_process sphingolipid biosynthetic process|GO:0030148||ISS  go_process sphingosine biosynthetic process|GO:0046512|11726713|IDA  go_function serine C-palmitoyltransferase activity|GO:0004758|11726713|IDA  go_function serine C-palmitoyltransferase activity|GO:0004758||ISS  go_function protein binding|GO:0005515|17194770|IPI  product LCB2; protein binding / serine C-palmitoyltransferase  note LCB2; FUNCTIONS IN: protein binding, serine C-palmitoyltransferase activity; INVOLVED IN: sphingosine biosynthetic process, photomorphogenesis, pollen development, sphingolipid biosynthetic process; LOCATED IN: endoplasmic reticulum, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase, class-II, pyridoxal-phosphate binding site (InterPro:IPR001917), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: SPT1 (SERINE PALMITOYLTRANSFERASE 1); serine C-palmitoyltransferase (TAIR:AT3G48780.1); Has 6667 Blast hits to 6646 proteins in 1229 species: Archae - 45; Bacteria - 3756; Metazoa - 628; Fungi - 393; Plants - 138; Viruses - 6; Other Eukaryotes - 1701 (source: NCBI BLink).  protein_id AT5G23670.1p  transcript_id AT5G23670.1  protein_id AT5G23670.1p  transcript_id AT5G23670.1  
At5g23670	chr5:007981889	0.0	W/7981889-7982014,7982117-7982182,7982337-7982425,7982622-7982767,7982841-7982965,7983065-7983158,7983245-7983408,7983649-7983810,7984135-7984261,7984380-7984546,7984664-7984771,7984942-7985037	AT5G23670.2  CDS  gene_syn LCB2, MQM1.6, MQM1_6, SERINE PALMITOYLTRANSFERASE  gene LCB2  function Encodes the LCB2 subunit of serine palmitoyltransferase, an enzyme involved in sphingosine biosynthesis. The protein is localized to the endoplasmic reticulum.  go_component endoplasmic reticulum|GO:0005783|11726713|IDA  go_component membrane|GO:0016020|11726713|IDA  go_process pollen development|GO:0009555|18208516|IMP  go_process photomorphogenesis|GO:0009640|18208516|IMP  go_process sphingolipid biosynthetic process|GO:0030148||ISS  go_process sphingosine biosynthetic process|GO:0046512|11726713|IDA  go_function serine C-palmitoyltransferase activity|GO:0004758|11726713|IDA  go_function serine C-palmitoyltransferase activity|GO:0004758||ISS  go_function protein binding|GO:0005515|17194770|IPI  product LCB2; protein binding / serine C-palmitoyltransferase  note LCB2; FUNCTIONS IN: protein binding, serine C-palmitoyltransferase activity; INVOLVED IN: sphingosine biosynthetic process, photomorphogenesis, pollen development, sphingolipid biosynthetic process; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase, class-II, pyridoxal-phosphate binding site (InterPro:IPR001917), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: SPT1 (SERINE PALMITOYLTRANSFERASE 1); serine C-palmitoyltransferase (TAIR:AT3G48780.1); Has 6667 Blast hits to 6646 proteins in 1229 species: Archae - 45; Bacteria - 3756; Metazoa - 628; Fungi - 393; Plants - 138; Viruses - 6; Other Eukaryotes - 1701 (source: NCBI BLink).  protein_id AT5G23670.2p  transcript_id AT5G23670.2  protein_id AT5G23670.2p  transcript_id AT5G23670.2  
At5g23680	chr5:007985573	0.0	C/7985573-7986460	AT5G23680.1  CDS  gene_syn MQM1.5, MQM1_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product sterile alpha motif (SAM) domain-containing protein  note sterile alpha motif (SAM) domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Sterile alpha motif-type (InterPro:IPR013761), Sterile alpha motif SAM (InterPro:IPR001660), Sterile alpha motif homology (InterPro:IPR010993); BEST Arabidopsis thaliana protein match is: sterile alpha motif (SAM) domain-containing protein (TAIR:AT3G48800.1); Has 448 Blast hits to 446 proteins in 64 species: Archae - 0; Bacteria - 20; Metazoa - 334; Fungi - 4; Plants - 49; Viruses - 3; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT5G23680.1p  transcript_id AT5G23680.1  protein_id AT5G23680.1p  transcript_id AT5G23680.1  
At5g23690	chr5:007987664	0.0	W/7987664-7987741,7987829-7987928,7988037-7988138,7988223-7988320,7988396-7988479,7988614-7988750,7988827-7988899,7988993-7989038,7989137-7989246,7989348-7989455,7989536-7989595,7989690-7989751,7989843-7990158,7990257-7990466	AT5G23690.1  CDS  gene_syn MQM1.4, MQM1_4  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_process RNA processing|GO:0006396||ISS  go_function RNA binding|GO:0003723||ISS  product polynucleotide adenylyltransferase family protein  note polynucleotide adenylyltransferase family protein; FUNCTIONS IN: RNA binding, nucleotidyltransferase activity; INVOLVED IN: RNA processing; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotide adenylyltransferase region (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G48830.1); Has 6038 Blast hits to 6036 proteins in 1422 species: Archae - 2; Bacteria - 3565; Metazoa - 113; Fungi - 169; Plants - 55; Viruses - 8; Other Eukaryotes - 2126 (source: NCBI BLink).  protein_id AT5G23690.1p  transcript_id AT5G23690.1  protein_id AT5G23690.1p  transcript_id AT5G23690.1  
At5g23700	chr5:007992851	0.0	W/7992851-7993171,7993260-7993441,7993520-7993598,7993714-7993755,7993840-7993902,7994358-7994407,7994503-7994530,7994665-7994739,7994818-7994928,7995009-7995069,7995217-7995316,7995413-7995518,7995595-7995655,7995751-7995926,7996077-7996206,7996284-7996420	AT5G23700.1  CDS  gene_syn MQM1.3, MQM1_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48860.2); Has 3380 Blast hits to 2747 proteins in 372 species: Archae - 27; Bacteria - 402; Metazoa - 1967; Fungi - 244; Plants - 208; Viruses - 22; Other Eukaryotes - 510 (source: NCBI BLink).  protein_id AT5G23700.1p  transcript_id AT5G23700.1  protein_id AT5G23700.1p  transcript_id AT5G23700.1  
At5g23710	chr5:007996528	0.0	C/7996528-7997220	AT5G23710.1  CDS  gene_syn MQM1.2, MQM1_2  go_component chloroplast|GO:0009507|15028209|IDA  go_process transcription|GO:0006350||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  product DNA binding / DNA-directed RNA polymerase  note DNA binding / DNA-directed RNA polymerase; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase Rpc34-like (InterPro:IPR016049), RNA polymerase Rpc34 (InterPro:IPR007832); Has 254 Blast hits to 241 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 89; Plants - 19; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT5G23710.1p  transcript_id AT5G23710.1  protein_id AT5G23710.1p  transcript_id AT5G23710.1  
At5g23720	chr5:007998309	0.0	W/7998309-7998350,7998521-7998598,7998689-7998831,7998967-7999168,7999241-7999417,7999522-7999682,8000165-8001260,8001406-8001552,8001670-8001897,8001997-8002154,8002237-8002594	AT5G23720.1  CDS  gene_syn MQM1.1, MQM1_1, PHS1, PROPYZAMIDE-HYPERSENSITIVE 1  gene PHS1  function Encodes a protein tyrosine phosphatase Propyzamide-Hypersensitive 1 (PHS1). One of the mutant alleles, phs1-1, is hypersensitive to the microtubule-destabilizing drug propyzamide, suggesting that PHS1 may be involved in phosphorylation cascades that control the dynamics of cortical microtubules in plant cells. A second allele, phs1-3, is hypersensitive to abscisic acid, indicating a possible involvement of PHS1 in ABA signalling.  go_component intracellular|GO:0005622||IEA  go_process response to abscisic acid stimulus|GO:0009737|16889651|IMP  go_process regulation of stomatal movement|GO:0010119|16889651|IMP  go_process regulation of gene expression, epigenetic|GO:0040029|16889651|IMP  go_process cortical microtubule organization|GO:0043622|15208393|IMP  go_function phosphoprotein phosphatase activity|GO:0004721|15208393|IDA  go_function protein tyrosine/serine/threonine phosphatase activity|GO:0008138||ISS  product PHS1 (PROPYZAMIDE-HYPERSENSITIVE 1); phosphoprotein phosphatase/ protein tyrosine/serine/threonine phosphatase  note PROPYZAMIDE-HYPERSENSITIVE 1 (PHS1); FUNCTIONS IN: protein tyrosine/serine/threonine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: cortical microtubule organization, regulation of gene expression, epigenetic, regulation of stomatal movement, response to abscisic acid stimulus; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Zinc finger, C2H2-like (InterPro:IPR015880), Protein-tyrosine phosphatase (InterPro:IPR000387), Actin-fragmin kinase, catalytic (InterPro:IPR015275), Protein-tyrosine phosphatase, dual specificity (InterPro:IPR000340), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: dual specificity protein phosphatase (DsPTP1) (TAIR:AT3G23610.2); Has 2988 Blast hits to 2976 proteins in 240 species: Archae - 8; Bacteria - 67; Metazoa - 1771; Fungi - 194; Plants - 176; Viruses - 133; Other Eukaryotes - 639 (source: NCBI BLink).  protein_id AT5G23720.1p  transcript_id AT5G23720.1  protein_id AT5G23720.1p  transcript_id AT5G23720.1  
At5g23720	chr5:007998506	0.0	W/7998506-7998598,7998689-7998831,7998967-7999168,7999241-7999417,7999522-7999682,8000165-8001260,8001406-8001552,8001670-8001897,8001997-8002154,8002237-8002594	AT5G23720.3  CDS  gene_syn MQM1.1, MQM1_1, PHS1, PROPYZAMIDE-HYPERSENSITIVE 1  gene PHS1  function Encodes a protein tyrosine phosphatase Propyzamide-Hypersensitive 1 (PHS1). One of the mutant alleles, phs1-1, is hypersensitive to the microtubule-destabilizing drug propyzamide, suggesting that PHS1 may be involved in phosphorylation cascades that control the dynamics of cortical microtubules in plant cells. A second allele, phs1-3, is hypersensitive to abscisic acid, indicating a possible involvement of PHS1 in ABA signalling.  go_component intracellular|GO:0005622||IEA  go_process response to abscisic acid stimulus|GO:0009737|16889651|IMP  go_process regulation of stomatal movement|GO:0010119|16889651|IMP  go_process regulation of gene expression, epigenetic|GO:0040029|16889651|IMP  go_process cortical microtubule organization|GO:0043622|15208393|IMP  go_function phosphoprotein phosphatase activity|GO:0004721|15208393|IDA  go_function protein tyrosine/serine/threonine phosphatase activity|GO:0008138||ISS  product PHS1 (PROPYZAMIDE-HYPERSENSITIVE 1); phosphoprotein phosphatase/ protein tyrosine/serine/threonine phosphatase  note PROPYZAMIDE-HYPERSENSITIVE 1 (PHS1); FUNCTIONS IN: protein tyrosine/serine/threonine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: cortical microtubule organization, regulation of gene expression, epigenetic, regulation of stomatal movement, response to abscisic acid stimulus; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Zinc finger, C2H2-like (InterPro:IPR015880), Protein-tyrosine phosphatase (InterPro:IPR000387), Actin-fragmin kinase, catalytic (InterPro:IPR015275), Protein-tyrosine phosphatase, dual specificity (InterPro:IPR000340), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: dual specificity protein phosphatase (DsPTP1) (TAIR:AT3G23610.2); Has 2988 Blast hits to 2976 proteins in 240 species: Archae - 8; Bacteria - 67; Metazoa - 1771; Fungi - 194; Plants - 176; Viruses - 133; Other Eukaryotes - 639 (source: NCBI BLink).  protein_id AT5G23720.3p  transcript_id AT5G23720.3  protein_id AT5G23720.3p  transcript_id AT5G23720.3  
At5g23720	chr5:007998816	0.0	W/7998816-7998831,7998972-7999168,7999241-7999417,7999522-7999682,8000165-8001260,8001406-8001552,8001670-8001897,8001997-8002154,8002237-8002594	AT5G23720.2  CDS  gene_syn MQM1.1, MQM1_1, PHS1, PROPYZAMIDE-HYPERSENSITIVE 1  gene PHS1  function Encodes a protein tyrosine phosphatase Propyzamide-Hypersensitive 1 (PHS1). One of the mutant alleles, phs1-1, is hypersensitive to the microtubule-destabilizing drug propyzamide, suggesting that PHS1 may be involved in phosphorylation cascades that control the dynamics of cortical microtubules in plant cells. A second allele, phs1-3, is hypersensitive to abscisic acid, indicating a possible involvement of PHS1 in ABA signalling.  go_process response to abscisic acid stimulus|GO:0009737|16889651|IMP  go_process regulation of stomatal movement|GO:0010119|16889651|IMP  go_process regulation of gene expression, epigenetic|GO:0040029|16889651|IMP  go_process cortical microtubule organization|GO:0043622|15208393|IMP  go_function phosphoprotein phosphatase activity|GO:0004721|15208393|IDA  go_function protein tyrosine/serine/threonine phosphatase activity|GO:0008138||ISS  product PHS1 (PROPYZAMIDE-HYPERSENSITIVE 1); phosphoprotein phosphatase/ protein tyrosine/serine/threonine phosphatase  note PROPYZAMIDE-HYPERSENSITIVE 1 (PHS1); FUNCTIONS IN: protein tyrosine/serine/threonine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: cortical microtubule organization, regulation of gene expression, epigenetic, regulation of stomatal movement, response to abscisic acid stimulus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Protein-tyrosine phosphatase (InterPro:IPR000387), Actin-fragmin kinase, catalytic (InterPro:IPR015275), Protein-tyrosine phosphatase, dual specificity (InterPro:IPR000340), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: dual specificity protein phosphatase (DsPTP1) (TAIR:AT3G23610.2); Has 2987 Blast hits to 2975 proteins in 240 species: Archae - 8; Bacteria - 67; Metazoa - 1771; Fungi - 194; Plants - 175; Viruses - 133; Other Eukaryotes - 639 (source: NCBI BLink).  protein_id AT5G23720.2p  transcript_id AT5G23720.2  protein_id AT5G23720.2p  transcript_id AT5G23720.2  
At5g23730	chr5:008005286	0.0	W/8005286-8006392	AT5G23730.1  CDS  gene_syn MRO11.23, MRO11_23  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function nucleotide binding|GO:0000166||ISS  product nucleotide binding  note nucleotide binding; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G52250.1); Has 9016 Blast hits to 6231 proteins in 356 species: Archae - 12; Bacteria - 1820; Metazoa - 3399; Fungi - 1848; Plants - 686; Viruses - 0; Other Eukaryotes - 1251 (source: NCBI BLink).  protein_id AT5G23730.1p  transcript_id AT5G23730.1  protein_id AT5G23730.1p  transcript_id AT5G23730.1  
At5g23740	chr5:008009319	0.0	C/8009319-8009330,8009197-8009237,8009007-8009107,8008609-8008753,8008426-8008515,8008251-8008341	AT5G23740.1  CDS  gene_syn MRO11.22, MRO11_22, RIBOSOMAL PROTEIN S11, RIBOSOMAL PROTEIN S11-BETA, RPS11-BETA  gene RPS11-BETA  function Encodes a putative ribosomal protein S11 (RPS11-beta).  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA); structural constituent of ribosome  note RIBOSOMAL PROTEIN S11-BETA (RPS11-BETA); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S17 (InterPro:IPR000266); BEST Arabidopsis thaliana protein match is: EMB1080 (embryo defective 1080); structural constituent of ribosome (TAIR:AT3G48930.1); Has 952 Blast hits to 950 proteins in 331 species: Archae - 160; Bacteria - 161; Metazoa - 240; Fungi - 98; Plants - 94; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink).  protein_id AT5G23740.1p  transcript_id AT5G23740.1  protein_id AT5G23740.1p  transcript_id AT5G23740.1  
At5g23750	chr5:008011252	0.0	C/8011252-8011453,8010866-8010904,8010492-8010579,8010294-8010375,8010004-8010198	AT5G23750.2  CDS  gene_syn MRO11.21, MRO11_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product remorin family protein  note remorin family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal region (InterPro:IPR005516), Remorin, N-terminal region (InterPro:IPR005518); BEST Arabidopsis thaliana protein match is: remorin family protein (TAIR:AT3G48940.1); Has 5915 Blast hits to 3846 proteins in 628 species: Archae - 14; Bacteria - 1196; Metazoa - 1344; Fungi - 588; Plants - 403; Viruses - 31; Other Eukaryotes - 2339 (source: NCBI BLink).  protein_id AT5G23750.2p  transcript_id AT5G23750.2  protein_id AT5G23750.2p  transcript_id AT5G23750.2  
At5g23750	chr5:008011252	0.0	C/8011252-8011453,8010866-8010907,8010492-8010579,8010294-8010375,8010004-8010198	AT5G23750.1  CDS  gene_syn MRO11.21, MRO11_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product remorin family protein  note remorin family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal region (InterPro:IPR005516), Remorin, N-terminal region (InterPro:IPR005518); BEST Arabidopsis thaliana protein match is: remorin family protein (TAIR:AT3G48940.1); Has 6628 Blast hits to 4218 proteins in 657 species: Archae - 23; Bacteria - 1319; Metazoa - 1646; Fungi - 630; Plants - 400; Viruses - 35; Other Eukaryotes - 2575 (source: NCBI BLink).  protein_id AT5G23750.1p  transcript_id AT5G23750.1  protein_id AT5G23750.1p  transcript_id AT5G23750.1  
At5g23760	chr5:008014121	0.0	C/8014121-8014129,8013965-8014043,8013242-8013465	AT5G23760.1  CDS  gene_syn MRO11.20, MRO11_20  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT1G01490.2); Has 2066 Blast hits to 1059 proteins in 125 species: Archae - 74; Bacteria - 55; Metazoa - 698; Fungi - 142; Plants - 317; Viruses - 16; Other Eukaryotes - 764 (source: NCBI BLink).  protein_id AT5G23760.1p  transcript_id AT5G23760.1  protein_id AT5G23760.1p  transcript_id AT5G23760.1  
At5g23770	chr5:008015690	0.0	C/8015690-8016106,8015503-8015572,8015290-8015441,8014513-8015139	AT5G23770.1  CDS  gene_syn MRO11.19, MRO11_19  go_function RNA binding|GO:0003723||IEA  product RNA binding  note RNA binding; FUNCTIONS IN: RNA binding; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Agenet (InterPro:IPR008395), Tudor-like, plant (InterPro:IPR014002), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein (TAIR:AT5G23780.1); Has 98 Blast hits to 85 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi - 2; Plants - 76; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT5G23770.1p  transcript_id AT5G23770.1  protein_id AT5G23770.1p  transcript_id AT5G23770.1  
At5g23780	chr5:008018553	0.0	C/8018553-8019026,8018252-8018321,8018020-8018156,8017291-8017890	AT5G23780.1  CDS  gene_syn MRO11.18, MRO11_18  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  product agenet domain-containing protein  note agenet domain-containing protein; FUNCTIONS IN: RNA binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: RNA binding (TAIR:AT5G23770.1); Has 116 Blast hits to 101 proteins in 18 species: Archae - 3; Bacteria - 4; Metazoa - 7; Fungi - 3; Plants - 83; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT5G23780.1p  transcript_id AT5G23780.1  protein_id AT5G23780.1p  transcript_id AT5G23780.1  
At5g23790	chr5:008021274	0.0	C/8021274-8021597,8020710-8021033,8020488-8020622,8020183-8020401	AT5G23790.1  CDS  gene_syn Arabidopsis thaliana galactinol synthase 5, AtGolS5, MRO11.17, MRO11_17  gene AtGolS5  go_component cellular_component|GO:0005575||ND  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product AtGolS5 (Arabidopsis thaliana galactinol synthase 5); transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note Arabidopsis thaliana galactinol synthase 5 (AtGolS5); FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: AtGolS6 (Arabidopsis thaliana galactinol synthase 6); transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT4G26250.1); Has 817 Blast hits to 816 proteins in 197 species: Archae - 0; Bacteria - 80; Metazoa - 218; Fungi - 179; Plants - 238; Viruses - 51; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT5G23790.1p  transcript_id AT5G23790.1  protein_id AT5G23790.1p  transcript_id AT5G23790.1  
At5g23800	chr5:008024228	0.0	C/8024228-8024689,8023670-8024119,8023416-8023458,8023173-8023258,8022431-8023020,8022216-8022243	AT5G23800.1  CDS  gene_syn MRO11.16, MRO11_16  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  product agenet domain-containing protein  note agenet domain-containing protein; FUNCTIONS IN: RNA binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: RNA binding (TAIR:AT5G23770.1); Has 125 Blast hits to 82 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G23800.1p  transcript_id AT5G23800.1  protein_id AT5G23800.1p  transcript_id AT5G23800.1  
At5g23810	chr5:008028461	0.0	W/8028461-8028542,8028622-8028858,8029048-8029141,8029246-8029466,8029565-8029698,8029821-8030048,8030323-8030730	AT5G23810.1  CDS  gene_syn AAP7, MRO11.15, MRO11_15  gene AAP7  function Encodes nonfunctional amino acid transporter. AAP7 is the most distantly related member of the AAP family, a group of well characterized amino acid transporters within the ATF1 superfamily. Expression of this gene has not been detected with RNA gel blots or promoter GUS studies.  go_component membrane|GO:0016020|12244056|ISS  go_process amino acid transport|GO:0006865|12244056|ISS  go_function amino acid transmembrane transporter activity|GO:0015171|7608199|IDA  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product AAP7; amino acid transmembrane transporter  note AAP7; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: AAP3; amino acid transmembrane transporter (TAIR:AT1G77380.1); Has 1401 Blast hits to 1396 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 375; Fungi - 190; Plants - 666; Viruses - 0; Other Eukaryotes - 170 (source: NCBI BLink).  protein_id AT5G23810.1p  transcript_id AT5G23810.1  protein_id AT5G23810.1p  transcript_id AT5G23810.1  
At5g23810	chr5:008028461	0.0	W/8028461-8028542,8028622-8028858,8029048-8029141,8029246-8029466,8029565-8029698,8029821-8030138	AT5G23810.2  CDS  gene_syn AAP7, MRO11.15, MRO11_15  gene AAP7  function Encodes nonfunctional amino acid transporter. AAP7 is the most distantly related member of the AAP family, a group of well characterized amino acid transporters within the ATF1 superfamily. Expression of this gene has not been detected with RNA gel blots or promoter GUS studies.  go_component membrane|GO:0016020|12244056|ISS  go_process amino acid transport|GO:0006865|12244056|ISS  go_function amino acid transmembrane transporter activity|GO:0015171|7608199|IDA  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product AAP7; amino acid transmembrane transporter  note AAP7; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: AAP3; amino acid transmembrane transporter (TAIR:AT1G77380.1); Has 994 Blast hits to 991 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 155; Fungi - 133; Plants - 556; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).  protein_id AT5G23810.2p  transcript_id AT5G23810.2  protein_id AT5G23810.2p  transcript_id AT5G23810.2  
At5g23820	chr5:008031386	0.0	W/8031386-8031482,8031736-8031837,8031931-8032109,8032693-8032809	AT5G23820.1  CDS  gene_syn MRO11.14, MRO11_14  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MD-2-related lipid recognition domain-containing protein / ML domain-containing protein  note MD-2-related lipid recognition domain-containing protein / ML domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MD-2-related lipid-recognition (InterPro:IPR003172); BEST Arabidopsis thaliana protein match is: MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (TAIR:AT5G23840.1); Has 35 Blast hits to 35 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G23820.1p  transcript_id AT5G23820.1  protein_id AT5G23820.1p  transcript_id AT5G23820.1  
At5g23830	chr5:008033802	0.0	W/8033802-8033898,8034065-8034154,8034278-8034459,8034596-8034712	AT5G23830.2  CDS  gene_syn MRO11.13, MRO11_13  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MD-2-related lipid recognition domain-containing protein / ML domain-containing protein  note MD-2-related lipid recognition domain-containing protein / ML domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: MD-2-related lipid-recognition (InterPro:IPR003172); BEST Arabidopsis thaliana protein match is: MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (TAIR:AT5G23840.1); Has 30 Blast hits to 30 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G23830.2p  transcript_id AT5G23830.2  protein_id AT5G23830.2p  transcript_id AT5G23830.2  
At5g23830	chr5:008033802	0.0	W/8033802-8033898,8034065-8034163,8034278-8034459,8034596-8034712	AT5G23830.1  CDS  gene_syn MRO11.13, MRO11_13  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MD-2-related lipid recognition domain-containing protein / ML domain-containing protein  note MD-2-related lipid recognition domain-containing protein / ML domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: MD-2-related lipid-recognition (InterPro:IPR003172); BEST Arabidopsis thaliana protein match is: MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (TAIR:AT5G23840.1); Has 35 Blast hits to 35 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G23830.1p  transcript_id AT5G23830.1  protein_id AT5G23830.1p  transcript_id AT5G23830.1  
At5g23840	chr5:008035874	0.0	W/8035874-8035970,8036181-8036282,8036383-8036561,8036652-8036777	AT5G23840.1  CDS  gene_syn MRO11.12, MRO11_12  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MD-2-related lipid recognition domain-containing protein / ML domain-containing protein  note MD-2-related lipid recognition domain-containing protein / ML domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: MD-2-related lipid-recognition (InterPro:IPR003172); BEST Arabidopsis thaliana protein match is: MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (TAIR:AT5G23820.1); Has 35 Blast hits to 35 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G23840.1p  transcript_id AT5G23840.1  protein_id AT5G23840.1p  transcript_id AT5G23840.1  
At5g23840	chr5:008035874	0.0	W/8035874-8035970,8036181-8036282,8036383-8036606	AT5G23840.2  CDS  gene_syn MRO11.12, MRO11_12  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MD-2-related lipid recognition domain-containing protein / ML domain-containing protein  note MD-2-related lipid recognition domain-containing protein / ML domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: MD-2-related lipid-recognition (InterPro:IPR003172); BEST Arabidopsis thaliana protein match is: MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (TAIR:AT5G23820.1); Has 35 Blast hits to 35 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G23840.2p  transcript_id AT5G23840.2  protein_id AT5G23840.2p  transcript_id AT5G23840.2  
At5g23850	chr5:008038126	0.0	W/8038126-8038314,8038890-8039494,8039598-8039790,8039876-8039940,8040051-8040261,8040376-8040741	AT5G23850.1  CDS  gene_syn MRO11.11, MRO11_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro:IPR008539); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48980.1); Has 588 Blast hits to 567 proteins in 103 species: Archae - 2; Bacteria - 34; Metazoa - 301; Fungi - 69; Plants - 115; Viruses - 3; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT5G23850.1p  transcript_id AT5G23850.1  protein_id AT5G23850.1p  transcript_id AT5G23850.1  
At5g23860	chr5:008042962	0.0	W/8042962-8043355,8043485-8043754,8043843-8044528	AT5G23860.1  CDS  gene_syn TUB8  gene TUB8  function beta-tubulin, preferentially expressed in endodermal and phloem cells of primary roots and in the vascular tissues of leaves, stems, and flowers.  go_component membrane|GO:0016020|17432890|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component tubulin complex|GO:0045298|1498609|ISS  go_process microtubule-based process|GO:0007017|1498609|ISS  go_process response to cold|GO:0009409|12231943|IEP  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function structural constituent of cytoskeleton|GO:0005200|1498609|ISS  product TUB8; structural constituent of cytoskeleton  note TUB8; FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: response to cyclopentenone, microtubule-based process, response to salt stress, response to cold; LOCATED IN: tubulin complex, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase (InterPro:IPR003008), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: TUB3; GTP binding / GTPase/ structural molecule (TAIR:AT5G62700.1); Has 17216 Blast hits to 17163 proteins in 3651 species: Archae - 30; Bacteria - 38; Metazoa - 3625; Fungi - 9661; Plants - 1009; Viruses - 0; Other Eukaryotes - 2853 (source: NCBI BLink).  protein_id AT5G23860.1p  transcript_id AT5G23860.1  protein_id AT5G23860.1p  transcript_id AT5G23860.1  
At5g23870	chr5:008049855	0.0	C/8049855-8049999,8049456-8049538,8048637-8048766,8047938-8048017,8047709-8047795,8047406-8047530,8047267-8047327,8047138-8047197,8046973-8047050,8046780-8046885,8046541-8046689,8046309-8046452	AT5G23870.1  CDS  gene_syn MRO11.9, MRO11_9  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process biological_process|GO:0008150||ND  go_function carboxylesterase activity|GO:0004091||ISS  product pectinacetylesterase family protein  note pectinacetylesterase family protein; FUNCTIONS IN: carboxylesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinacetylesterase (InterPro:IPR004963); BEST Arabidopsis thaliana protein match is: pectinacetylesterase family protein (TAIR:AT3G62060.1); Has 394 Blast hits to 390 proteins in 76 species: Archae - 0; Bacteria - 36; Metazoa - 114; Fungi - 0; Plants - 158; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT5G23870.1p  transcript_id AT5G23870.1  protein_id AT5G23870.1p  transcript_id AT5G23870.1  
At5g23870	chr5:008049855	0.0	C/8049855-8049999,8049456-8049538,8048637-8048766,8047938-8048017,8047709-8047795,8047406-8047530,8047267-8047327,8047138-8047197,8046973-8047050,8046780-8046885,8046541-8046689,8046327-8046452,8046060-8046185	AT5G23870.3  CDS  gene_syn MRO11.9, MRO11_9  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process biological_process|GO:0008150||ND  go_function carboxylesterase activity|GO:0004091||ISS  product pectinacetylesterase family protein  note pectinacetylesterase family protein; FUNCTIONS IN: carboxylesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinacetylesterase (InterPro:IPR004963); BEST Arabidopsis thaliana protein match is: pectinacetylesterase family protein (TAIR:AT3G62060.1); Has 394 Blast hits to 390 proteins in 76 species: Archae - 0; Bacteria - 36; Metazoa - 114; Fungi - 0; Plants - 158; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT5G23870.3p  transcript_id AT5G23870.3  protein_id AT5G23870.3p  transcript_id AT5G23870.3  
At5g23870	chr5:008049855	0.0	C/8049855-8049999,8049456-8049538,8048637-8048766,8047938-8048017,8047709-8047795,8047406-8047530,8047267-8047327,8047138-8047197,8046973-8047050,8046780-8046885,8046541-8046689,8046327-8046452,8046149-8046185,8045958-8046001	AT5G23870.2  CDS  gene_syn MRO11.9, MRO11_9  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process biological_process|GO:0008150||ND  go_function carboxylesterase activity|GO:0004091||ISS  product pectinacetylesterase family protein  note pectinacetylesterase family protein; FUNCTIONS IN: carboxylesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinacetylesterase (InterPro:IPR004963); BEST Arabidopsis thaliana protein match is: pectinacetylesterase family protein (TAIR:AT3G62060.1); Has 394 Blast hits to 390 proteins in 76 species: Archae - 0; Bacteria - 36; Metazoa - 114; Fungi - 0; Plants - 158; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT5G23870.2p  transcript_id AT5G23870.2  protein_id AT5G23870.2p  transcript_id AT5G23870.2  
At5g23880	chr5:008052550	0.0	W/8052550-8052698,8052777-8052945,8053024-8053120,8053323-8053449,8053551-8053669,8053773-8053867,8053951-8054102,8054188-8054245,8054392-8054499,8055380-8055623,8055991-8056175,8056552-8056644,8057194-8057292,8057380-8057511,8057601-8057645,8057728-8057973,8058046-8058147	AT5G23880.1  CDS  gene_syn ATCPSF100, CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR, CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100, CPSF100, EMB1265, EMBRYO DEFECTIVE 1265, ENHANCED SILENCING PHENOTYPE 5, ESP5  gene CPSF100  function Encodes a protein similar to the 100kD subunit of cleavage and polyadenylation specificity factor (CPSF), the factor responsible for the recognition of the AAUAAA motif during mRNA polyadenylation. The protein interacts with a portion of a nuclear poly(A) polymerase. It is likely to be a part of the mRNA 3 end formation apparatus.  go_component nucleus|GO:0005634|16897494|IDA  go_component mRNA cleavage and polyadenylation specificity factor complex|GO:0005847|12602868|ISS  go_component mRNA cleavage and polyadenylation specificity factor complex|GO:0005847|17008405|NAS  go_process mRNA polyadenylation|GO:0006378|12602868|ISS  go_process mRNA cleavage|GO:0006379|12602868|ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process posttranscriptional gene silencing by RNA|GO:0035194|17008405|IMP  go_function DNA binding|GO:0003677|12602868|IPI  go_function protein binding|GO:0005515|16897494|IPI  product CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100); DNA binding / protein binding  note CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100 (CPSF100); FUNCTIONS IN: protein binding, DNA binding; INVOLVED IN: embryonic development ending in seed dormancy, mRNA cleavage, posttranscriptional gene silencing by RNA, mRNA polyadenylation; LOCATED IN: mRNA cleavage and polyadenylation specificity factor complex, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-metabolising metallo-beta-lactamase (InterPro:IPR011108), Beta-lactamase-like (InterPro:IPR001279); BEST Arabidopsis thaliana protein match is: CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I); protein binding (TAIR:AT1G61010.3); Has 2025 Blast hits to 1992 proteins in 569 species: Archae - 234; Bacteria - 690; Metazoa - 512; Fungi - 191; Plants - 68; Viruses - 0; Other Eukaryotes - 330 (source: NCBI BLink).  protein_id AT5G23880.1p  transcript_id AT5G23880.1  protein_id AT5G23880.1p  transcript_id AT5G23880.1  
At5g23890	chr5:008058789	0.0	W/8058789-8059068,8059485-8059559,8059660-8060648,8060762-8060850,8060958-8061061,8061140-8061230,8061511-8061586,8061660-8061774,8061848-8062379,8062516-8063005	AT5G23890.1  CDS  gene_syn MRO11.7, MRO11_7  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  product unknown protein  note LOCATED IN: mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: S-layer homology region (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52410.2); Has 47782 Blast hits to 27307 proteins in 1672 species: Archae - 444; Bacteria - 6951; Metazoa - 22630; Fungi - 3561; Plants - 1682; Viruses - 252; Other Eukaryotes - 12262 (source: NCBI BLink).  protein_id AT5G23890.1p  transcript_id AT5G23890.1  protein_id AT5G23890.1p  transcript_id AT5G23890.1  
At5g23900	chr5:008064976	0.0	C/8064976-8065081,8064753-8064886,8064496-8064654,8064176-8064397	AT5G23900.1  CDS  gene_syn MRO11.6, MRO11_6  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L13 (RPL13D)  note 60S ribosomal protein L13 (RPL13D); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13e, conserved site (InterPro:IPR018256), Ribosomal protein L13e (InterPro:IPR001380); BEST Arabidopsis thaliana protein match is: ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1); structural constituent of ribosome (TAIR:AT3G49010.3); Has 546 Blast hits to 546 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 227; Fungi - 113; Plants - 98; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT5G23900.1p  transcript_id AT5G23900.1  protein_id AT5G23900.1p  transcript_id AT5G23900.1  
At5g23903	chr5:008066419	0.0	W/8066419-8066482,8066590-8066862,8066949-8067037	AT5G23903.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07680.1); Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G23903.1p  transcript_id AT5G23903.1  protein_id AT5G23903.1p  transcript_id AT5G23903.1  
At5g23908	chr5:008068071	0.0	C/8068071-8068280	AT5G23908.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G23908.1p  transcript_id AT5G23908.1  protein_id AT5G23908.1p  transcript_id AT5G23908.1  
At5g23910	chr5:008068452	0.0	W/8068452-8068600,8068864-8069029,8069124-8069324,8069419-8069590,8069689-8069891,8069980-8070239,8070351-8070405,8070477-8070509,8070604-8070799,8070875-8070945,8071035-8071088,8071165-8071234,8071322-8071390,8071477-8071784,8071892-8071938,8072130-8072151,8072249-8072311,8072524-8072562,8072682-8072723	AT5G23910.1  CDS  gene_syn MRO11.5, MRO11_5  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product ATP binding / microtubule motor  note ATP binding / microtubule motor; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin motor protein-related (TAIR:AT5G02370.1); Has 6762 Blast hits to 6701 proteins in 279 species: Archae - 0; Bacteria - 100; Metazoa - 3435; Fungi - 793; Plants - 836; Viruses - 0; Other Eukaryotes - 1598 (source: NCBI BLink).  protein_id AT5G23910.1p  transcript_id AT5G23910.1  protein_id AT5G23910.1p  transcript_id AT5G23910.1  
At5g23920	chr5:008073815	0.0	C/8073815-8074118,8073363-8073748	AT5G23920.1  CDS  gene_syn MRO11.4, MRO11_4  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52420.1); Has 42 Blast hits to 42 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G23920.1p  transcript_id AT5G23920.1  protein_id AT5G23920.1p  transcript_id AT5G23920.1  
At5g23930	chr5:008074625	0.0	C/8074625-8075998	AT5G23930.1  CDS  gene_syn MRO11.3, MRO11_3  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial transcription termination factor-related / mTERF-related  note mitochondrial transcription termination factor-related / mTERF-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: mitochondrial transcription termination factor-related / mTERF-related (TAIR:AT3G46950.1); Has 464 Blast hits to 360 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 449; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G23930.1p  transcript_id AT5G23930.1  protein_id AT5G23930.1p  transcript_id AT5G23930.1  
At5g23940	chr5:008079222	0.0	C/8079222-8079677,8076616-8077614	AT5G23940.1  CDS  gene_syn EMB3009, MRO11.2, MRO11_2, embryo defective 3009  gene EMB3009  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function transferase activity|GO:0016740||ISS  product EMB3009 (embryo defective 3009); transferase/ transferase, transferring acyl groups other than amino-acyl groups  note embryo defective 3009 (EMB3009); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT5G01210.1); Has 1368 Blast hits to 1360 proteins in 136 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 156; Plants - 1198; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G23940.1p  transcript_id AT5G23940.1  protein_id AT5G23940.1p  transcript_id AT5G23940.1  
At5g23950	chr5:008082789	0.0	W/8082789-8083448	AT5G23950.1  CDS  gene_syn MRO11.1, MRO11_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT1G07310.1); Has 7048 Blast hits to 1687 proteins in 171 species: Archae - 4; Bacteria - 820; Metazoa - 2245; Fungi - 1101; Plants - 496; Viruses - 60; Other Eukaryotes - 2322 (source: NCBI BLink).  protein_id AT5G23950.1p  transcript_id AT5G23950.1  protein_id AT5G23950.1p  transcript_id AT5G23950.1  
At5g23955	chr5:008085082	0.0	W/8085082-8090422	AT5G23955.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.6e-41 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At5g23960	chr5:008092969	0.0	W/8092969-8093055,8093145-8093424,8093518-8093890,8093975-8094193,8094283-8094427,8094505-8094753,8094838-8095128	AT5G23960.1  CDS  gene_syn ATTPS21, MZF18.16, MZF18_16, TERPENE SYNTHASE 21, TPS21  gene TPS21  function Encodes a sesquiterpene synthase involved in generating all of the group A sesquiterpenes found in the Arabidopsis floral volatile blend. Strongly expressed in the stigma.  go_component cellular_component|GO:0005575||ND  go_process sesquiterpenoid biosynthetic process|GO:0016106|15918888|IDA  go_process sesquiterpene biosynthetic process|GO:0051762|15918888|IDA  go_function (-)-E-beta-caryophyllene synthase activity|GO:0080016|12566586|IDA  go_function alpha-humulene synthase activity|GO:0080017|12566586|IDA  product TPS21 (TERPENE SYNTHASE 21); (-)-E-beta-caryophyllene synthase/ alpha-humulene synthase  note TERPENE SYNTHASE 21 (TPS21); FUNCTIONS IN: (-)-E-beta-caryophyllene synthase activity, alpha-humulene synthase activity; INVOLVED IN: sesquiterpene biosynthetic process, sesquiterpenoid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase/cyclase family protein (TAIR:AT3G14490.1); Has 1105 Blast hits to 1088 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1102; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G23960.1p  transcript_id AT5G23960.1  protein_id AT5G23960.1p  transcript_id AT5G23960.1  
At5g23970	chr5:008096326	0.0	W/8096326-8097612	AT5G23970.1  CDS  gene_syn MZF18.15, MZF18_15  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT3G30280.1); Has 1148 Blast hits to 1147 proteins in 97 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 9; Plants - 1135; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G23970.1p  transcript_id AT5G23970.1  protein_id AT5G23970.1p  transcript_id AT5G23970.1  
At5g23980	chr5:008101129	0.0	C/8101129-8101282,8100944-8101040,8100680-8100859,8100129-8100363,8099685-8100012,8099245-8099482,8098424-8099148,8098167-8098309	AT5G23980.1  CDS  gene_syn ATFRO4, FERRIC REDUCTION OXIDASE 4, FRO4, MZF18.14, MZF18_14  gene FRO4  function Encodes a ferric chelate reductase that is expressed at low levels in roots,shoots and cotyledons, but not flowers. Its transcription is regulated by FIT1.  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component membrane|GO:0016020||ISS  go_function ferric-chelate reductase activity|GO:0000293|16006655|IDA  product FRO4 (FERRIC REDUCTION OXIDASE 4); ferric-chelate reductase  note FERRIC REDUCTION OXIDASE 4 (FRO4); FUNCTIONS IN: ferric-chelate reductase activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: endomembrane system, integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Ferric reductase, NAD binding (InterPro:IPR013121), Cytochrome b245, heavy chain (InterPro:IPR000778), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130); BEST Arabidopsis thaliana protein match is: FRO5 (FERRIC REDUCTION OXIDASE 5); ferric-chelate reductase (TAIR:AT5G23990.1); Has 1895 Blast hits to 1890 proteins in 305 species: Archae - 9; Bacteria - 261; Metazoa - 496; Fungi - 772; Plants - 253; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT5G23980.1p  transcript_id AT5G23980.1  protein_id AT5G23980.1p  transcript_id AT5G23980.1  
At5g23989	chr5:008105233	0.0	W/8105233-8105325	AT5G23989.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G23989.1p  transcript_id AT5G23989.1  protein_id AT5G23989.1p  transcript_id AT5G23989.1  
At5g23990	chr5:008108469	0.0	C/8108469-8108590,8108261-8108357,8108078-8108170,8107456-8107683,8107012-8107339,8106639-8106876,8105826-8106550,8105565-8105707	AT5G23990.1  CDS  gene_syn ATFRO5, FERRIC REDUCTION OXIDASE 5, FRO5, MZF18.13, MZF18_13  gene FRO5  function Encodes a ferric chelate reductase that is expressed at low levels in roots,shoots and flowers, but not cotyledons.  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  go_function ferric-chelate reductase activity|GO:0000293|16006655|IDA  go_function ferric-chelate reductase activity|GO:0000293||ISS  product FRO5 (FERRIC REDUCTION OXIDASE 5); ferric-chelate reductase  note FERRIC REDUCTION OXIDASE 5 (FRO5); FUNCTIONS IN: ferric-chelate reductase activity; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: shoot, flower; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Ferric reductase, NAD binding (InterPro:IPR013121), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130); BEST Arabidopsis thaliana protein match is: FRO4 (FERRIC REDUCTION OXIDASE 4); ferric-chelate reductase (TAIR:AT5G23980.1); Has 1906 Blast hits to 1898 proteins in 300 species: Archae - 7; Bacteria - 272; Metazoa - 503; Fungi - 760; Plants - 255; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).  protein_id AT5G23990.1p  transcript_id AT5G23990.1  protein_id AT5G23990.1p  transcript_id AT5G23990.1  
At5g24000	chr5:008112424	0.0	C/8112424-8112692,8112128-8112354,8111835-8111945,8111447-8111605,8110874-8111115,8110380-8110703	AT5G24000.1  CDS  gene_syn MZF18.12, MZF18_12  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF819 (InterPro:IPR008537); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52540.1); Has 538 Blast hits to 536 proteins in 135 species: Archae - 2; Bacteria - 271; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 231 (source: NCBI BLink).  protein_id AT5G24000.1p  transcript_id AT5G24000.1  protein_id AT5G24000.1p  transcript_id AT5G24000.1  
At5g24010	chr5:008113910	0.0	W/8113910-8116384	AT5G24010.1  CDS  gene_syn MZF18.11, MZF18_11  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: THE1 (THESEUS1); kinase/ protein kinase (TAIR:AT5G54380.1); Has 84986 Blast hits to 84063 proteins in 3196 species: Archae - 46; Bacteria - 7268; Metazoa - 37778; Fungi - 6711; Plants - 18629; Viruses - 366; Other Eukaryotes - 14188 (source: NCBI BLink).  protein_id AT5G24010.1p  transcript_id AT5G24010.1  protein_id AT5G24010.1p  transcript_id AT5G24010.1  
At5g24020	chr5:008116731	0.0	W/8116731-8117711	AT5G24020.1  CDS  gene_syn ACCUMULATION AND REPLICATION OF CHLOROPLASTS 11, ARC11, ATMIND1, MIND, MZF18.10, MZF18_10  gene MIND  function Encodes a Ca2+ dependent ATPase required for correct positioning of the chloroplast division apparatus. Its ATPase activity is stimulated by AtMinE1, a topological specificity factor.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|10801439|IDA  go_component chloroplast|GO:0009507|15126639|IDA  go_process chloroplast fission|GO:0010020|10417716|IMP  go_process chloroplast fission|GO:0010020|11800381|IMP  go_function protein binding|GO:0005515|16014621|IPI  go_function ATPase activity|GO:0016887|10801439|TAS  go_function calcium-dependent ATPase activity|GO:0030899|16014621|IDA  go_function protein homodimerization activity|GO:0042803|15126639|IPI  product MIND; ATPase/ calcium-dependent ATPase/ protein binding / protein homodimerization  note MIND; FUNCTIONS IN: calcium-dependent ATPase activity, protein binding, ATPase activity, protein homodimerization activity; INVOLVED IN: chloroplast fission; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Septum site-determining protein MinD (InterPro:IPR010223), Cobyrinic acid a,c-diamide synthase (InterPro:IPR002586); Has 12452 Blast hits to 12447 proteins in 1566 species: Archae - 446; Bacteria - 7743; Metazoa - 202; Fungi - 164; Plants - 109; Viruses - 0; Other Eukaryotes - 3788 (source: NCBI BLink).  protein_id AT5G24020.1p  transcript_id AT5G24020.1  protein_id AT5G24020.1p  transcript_id AT5G24020.1  
At5g24030	chr5:008120823	0.0	C/8120823-8120993,8120168-8120713,8119211-8119981,8119090-8119121,8118618-8119005	AT5G24030.1  CDS  gene_syn MZF18.9, MZF18_9, SLAC1 HOMOLOGUE 3, SLAH3  gene SLAH3  function Encodes a protein with ten predicted transmembrane helices. The SLAH3 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. Although it is not expressed in guard cells, it can complement an slac1-2 mutant suggesting that it performs a similar function. SLAH3:GFP localizes to the plasma membrane.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|18305482|IDA  go_component integral to membrane|GO:0016021||ISS  go_process cellular ion homeostasis|GO:0006873|18305482|IMP  go_function transporter activity|GO:0005215||ISS  product SLAH3 (SLAC1 HOMOLOGUE 3); transporter  note SLAC1 HOMOLOGUE 3 (SLAH3); FUNCTIONS IN: transporter activity; INVOLVED IN: cellular ion homeostasis; LOCATED IN: integral to membrane, plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: C4-dicarboxylate transporter/malic acid transport protein (InterPro:IPR004695); BEST Arabidopsis thaliana protein match is: SLAH2 (SLAC1 HOMOLOGUE 2); transporter (TAIR:AT4G27970.1); Has 609 Blast hits to 609 proteins in 230 species: Archae - 8; Bacteria - 377; Metazoa - 30; Fungi - 35; Plants - 88; Viruses - 3; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT5G24030.1p  transcript_id AT5G24030.1  protein_id AT5G24030.1p  transcript_id AT5G24030.1  
At5g24040	chr5:008127083	0.0	C/8127083-8127336,8126537-8127011,8126045-8126437	AT5G24040.1  CDS  gene_syn MZF18.8, MZF18_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16290.1); Has 85 Blast hits to 83 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G24040.1p  transcript_id AT5G24040.1  protein_id AT5G24040.1p  transcript_id AT5G24040.1  
At5g24050	chr5:008128353	0.0	C/8128353-8129402	AT5G24050.1  CDS  gene_syn MZF18.7, MZF18_7  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508), Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT3G24850.1); Has 56 Blast hits to 56 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G24050.1p  transcript_id AT5G24050.1  protein_id AT5G24050.1p  transcript_id AT5G24050.1  
At5g24060	chr5:008133230	0.0	C/8133230-8133269,8133047-8133146,8132604-8132787,8132275-8132377,8132113-8132183,8131569-8131730,8131333-8131470,8130951-8131244,8130695-8130847,8130483-8130578,8130273-8130377	AT5G24060.1  CDS  gene_syn MZF18.6, MZF18_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49140.1); Has 287 Blast hits to 264 proteins in 72 species: Archae - 0; Bacteria - 18; Metazoa - 77; Fungi - 32; Plants - 41; Viruses - 10; Other Eukaryotes - 109 (source: NCBI BLink).  protein_id AT5G24060.1p  transcript_id AT5G24060.1  protein_id AT5G24060.1p  transcript_id AT5G24060.1  
At5g24065	chr5:008133460	0.0	W/8133460-8134077	AT5G24065.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G24065  
At5g24070	chr5:008135746	0.0	C/8135746-8135991,8135486-8135665,8135219-8135378,8134301-8134737	AT5G24070.1  CDS  gene_syn MZF18.4, MZF18_4  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase family protein  note peroxidase family protein; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT2G43480.1); Has 2555 Blast hits to 2543 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 40; Plants - 2497; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT5G24070.1p  transcript_id AT5G24070.1  protein_id AT5G24070.1p  transcript_id AT5G24070.1  
At5g24080	chr5:008140606	0.0	C/8140606-8141014,8140343-8140523,8139806-8140256,8139334-8139705	AT5G24080.1  CDS  gene_syn MZF18.3, MZF18_3  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT2G19130.1); Has 83012 Blast hits to 81933 proteins in 3234 species: Archae - 50; Bacteria - 7141; Metazoa - 37012; Fungi - 6145; Plants - 18411; Viruses - 299; Other Eukaryotes - 13954 (source: NCBI BLink).  protein_id AT5G24080.1p  transcript_id AT5G24080.1  protein_id AT5G24080.1p  transcript_id AT5G24080.1  
At5g24090	chr5:008144848	0.0	C/8144848-8145153,8144482-8144678,8143805-8144210	AT5G24090.1  CDS  gene_syn MZF18.2, MZF18_2  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product acidic endochitinase (CHIB1)  note acidic endochitinase (CHIB1); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, chitinase active site (InterPro:IPR001579), Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); Has 815 Blast hits to 812 proteins in 236 species: Archae - 0; Bacteria - 191; Metazoa - 8; Fungi - 218; Plants - 394; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G24090.1p  transcript_id AT5G24090.1  protein_id AT5G24090.1p  transcript_id AT5G24090.1  
At5g24100	chr5:008149216	0.0	W/8149216-8150494,8150626-8151191	AT5G24100.1  CDS  gene_syn MZF18.1, MZF18_1  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT5G53320.1); Has 80218 Blast hits to 57472 proteins in 2416 species: Archae - 40; Bacteria - 4669; Metazoa - 25170; Fungi - 3075; Plants - 38127; Viruses - 236; Other Eukaryotes - 8901 (source: NCBI BLink).  protein_id AT5G24100.1p  transcript_id AT5G24100.1  protein_id AT5G24100.1p  transcript_id AT5G24100.1  
At5g24105	chr5:008152097	0.0	W/8152097-8152214,8152583-8152656	AT5G24105.1  CDS  gene_syn AGP41, ARABINOGALACTAN-PROTEIN 41  gene AGP41  function Encodes a putative arabinogalactan-protein (AGP41).  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product AGP41 (ARABINOGALACTAN-PROTEIN 41)  note ARABINOGALACTAN-PROTEIN 41 (AGP41); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1070 (InterPro:IPR009424); BEST Arabidopsis thaliana protein match is: AGP16 (ARABINOGALACTAN PROTEIN 16) (TAIR:AT2G46330.1); Has 60 Blast hits to 60 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G24105.1p  transcript_id AT5G24105.1  protein_id AT5G24105.1p  transcript_id AT5G24105.1  
At5g24110	chr5:008154371	0.0	C/8154371-8154633,8154154-8154288,8153416-8153929	AT5G24110.1  CDS  gene_syn AtWRKY30, MLE8.3, MLE8_3, WRKY30  gene WRKY30  function member of WRKY Transcription Factor; Group III  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY30; transcription factor  note WRKY30; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY53; DNA binding / protein binding / transcription activator/ transcription factor (TAIR:AT4G23810.1); Has 1911 Blast hits to 1637 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1892; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT5G24110.1p  transcript_id AT5G24110.1  protein_id AT5G24110.1p  transcript_id AT5G24110.1  
At5g24120	chr5:008159039	0.0	C/8159039-8159746,8158770-8158916,8158426-8158662,8158073-8158336,8157794-8157991	AT5G24120.1  CDS  gene_syn ATSIG5, MLE8.4, MLE8_4, SIG5, SIGE, SIGMA FACTOR, SIGMA FACTOR 5, SIGMA FACTOR E  gene SIGE  function Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes.  go_process transcription initiation|GO:0006352|10984613|TAS  go_process transcription initiation|GO:0006352||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to blue light|GO:0009637|18532976|IGI  go_process response to red light|GO:0010114|17076805|IEP  go_process response to far red light|GO:0010218|17076805|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  go_function sigma factor activity|GO:0016987|10984613|ISS  go_function sigma factor activity|GO:0016987||ISS  product SIGE (SIGMA FACTOR E); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor  note SIGMA FACTOR E (SIGE); FUNCTIONS IN: DNA-directed RNA polymerase activity, transcription factor activity, sigma factor activity, DNA binding; INVOLVED IN: response to blue light, response to red light, response to far red light, regulation of transcription, DNA-dependent, transcription initiation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor, region 2 (InterPro:IPR013325), Winged helix repressor DNA-binding (InterPro:IPR011991), RNA polymerase sigma-70 region 3 (InterPro:IPR007624), RNA polymerase sigma-70 (InterPro:IPR014284), RNA polymerase sigma factor, regions 3 and 4 (InterPro:IPR013324), RNA polymerase sigma-70 region 2 (InterPro:IPR007627), RNA polymerase sigma-70 region 4 (InterPro:IPR007630), RNA polymerase sigma-70 factor (InterPro:IPR000943); BEST Arabidopsis thaliana protein match is: SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor (TAIR:AT1G08540.1); Has 15248 Blast hits to 15243 proteins in 1576 species: Archae - 5; Bacteria - 9360; Metazoa - 6; Fungi - 4; Plants - 150; Viruses - 0; Other Eukaryotes - 5723 (source: NCBI BLink).  protein_id AT5G24120.1p  transcript_id AT5G24120.1  protein_id AT5G24120.1p  transcript_id AT5G24120.1  
At5g24130	chr5:008162247	0.0	W/8162247-8162491,8162675-8162789,8163155-8163406,8163487-8163825	AT5G24130.1  CDS  gene_syn MLE8.5, MLE8_5  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: leaf whorl, petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 31 Blast hits to 31 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G24130.1p  transcript_id AT5G24130.1  protein_id AT5G24130.1p  transcript_id AT5G24130.1  
At5g24140	chr5:008167478	0.0	C/8167478-8167669,8166605-8166716,8166309-8166486,8166012-8166180,8165669-8165887,8165232-8165519,8164788-8165066,8164547-8164660	AT5G24140.1  CDS  gene_syn MLE8.6, MLE8_6, SQP2  gene SQP2  function Encodes a protein with similarity to squalene monoxygenases.  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_function squalene monooxygenase activity|GO:0004506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_process sterol biosynthetic process|GO:0016126|10350086|TAS  product SQP2; FAD binding / oxidoreductase/ squalene monooxygenase  note SQP2; FUNCTIONS IN: squalene monooxygenase activity, oxidoreductase activity, FAD binding; INVOLVED IN: sterol biosynthetic process; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Squalene epoxidase (InterPro:IPR013698), Aromatic-ring hydroxylase-like (InterPro:IPR003042), FAD dependent oxidoreductase (InterPro:IPR006076); BEST Arabidopsis thaliana protein match is: SQP1; squalene monooxygenase (TAIR:AT5G24150.1); Has 2045 Blast hits to 2045 proteins in 590 species: Archae - 5; Bacteria - 1013; Metazoa - 156; Fungi - 149; Plants - 82; Viruses - 0; Other Eukaryotes - 640 (source: NCBI BLink).  protein_id AT5G24140.1p  transcript_id AT5G24140.1  protein_id AT5G24140.1p  transcript_id AT5G24140.1  
At5g24150	chr5:008175198	0.0	C/8175198-8175395,8174871-8174982,8174577-8174757,8173995-8174163,8173686-8173904,8173241-8173519,8172875-8173153,8172594-8172707	AT5G24150.1  CDS  gene_syn K12G2.2, K12G2_2, SQE5, SQP1, SQUALENE MONOOXYGENASE 5  gene SQP1  function squalene monooxygenase gene homolog  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process sterol biosynthetic process|GO:0016126|10350086|TAS  go_function squalene monooxygenase activity|GO:0004506|10350086|ISS  product SQP1; squalene monooxygenase  note SQP1; FUNCTIONS IN: squalene monooxygenase activity; INVOLVED IN: sterol biosynthetic process; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Squalene epoxidase (InterPro:IPR013698), FAD dependent oxidoreductase (InterPro:IPR006076), Aromatic-ring hydroxylase-like (InterPro:IPR003042); BEST Arabidopsis thaliana protein match is: SQE6 (SQUALENE MONOXYGENASE 6); FAD binding / oxidoreductase/ squalene monooxygenase (TAIR:AT5G24160.1); Has 1680 Blast hits to 1680 proteins in 451 species: Archae - 5; Bacteria - 708; Metazoa - 124; Fungi - 165; Plants - 92; Viruses - 0; Other Eukaryotes - 586 (source: NCBI BLink).  protein_id AT5G24150.1p  transcript_id AT5G24150.1  protein_id AT5G24150.1p  transcript_id AT5G24150.1  
At5g24150	chr5:008175198	0.0	C/8175198-8175395,8174871-8174982,8174577-8174757,8173995-8174163,8173686-8173904,8173241-8173519,8172877-8173153,8172670-8172707	AT5G24150.2  CDS  gene_syn K12G2.2, K12G2_2, SQE5, SQP1, SQUALENE MONOOXYGENASE 5  gene SQP1  function squalene monooxygenase gene homolog  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process sterol biosynthetic process|GO:0016126|10350086|TAS  go_function squalene monooxygenase activity|GO:0004506|10350086|ISS  product SQP1; squalene monooxygenase  note SQP1; FUNCTIONS IN: squalene monooxygenase activity; INVOLVED IN: sterol biosynthetic process; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Squalene epoxidase (InterPro:IPR013698), Aromatic-ring hydroxylase-like (InterPro:IPR003042), FAD dependent oxidoreductase (InterPro:IPR006076); BEST Arabidopsis thaliana protein match is: SQE6 (SQUALENE MONOXYGENASE 6); FAD binding / oxidoreductase/ squalene monooxygenase (TAIR:AT5G24160.1); Has 1680 Blast hits to 1680 proteins in 451 species: Archae - 5; Bacteria - 708; Metazoa - 124; Fungi - 165; Plants - 92; Viruses - 0; Other Eukaryotes - 586 (source: NCBI BLink).  protein_id AT5G24150.2p  transcript_id AT5G24150.2  protein_id AT5G24150.2p  transcript_id AT5G24150.2  
At5g24155	chr5:008180813	0.0	C/8180813-8181016,8180549-8180660,8180118-8180167	AT5G24155.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process sterol biosynthetic process|GO:0016126|10350086|TAS  product squalene monooxygenase, putative / squalene epoxidase, putative  note squalene monooxygenase, putative / squalene epoxidase, putative; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: sterol biosynthetic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: FAD dependent oxidoreductase (InterPro:IPR006076); BEST Arabidopsis thaliana protein match is: SQE6 (SQUALENE MONOXYGENASE 6); FAD binding / oxidoreductase/ squalene monooxygenase (TAIR:AT5G24160.1); Has 396 Blast hits to 396 proteins in 168 species: Archae - 0; Bacteria - 116; Metazoa - 64; Fungi - 104; Plants - 73; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT5G24155.1p  transcript_id AT5G24155.1  protein_id AT5G24155.1p  transcript_id AT5G24155.1  
At5g24160	chr5:008186404	0.0	C/8186404-8186601,8185824-8185935,8185542-8185722,8184681-8184852,8184333-8184551,8183898-8184176,8183535-8183813,8183291-8183404	AT5G24160.1  CDS  gene_syn K12G2.4, K12G2_4, SQE6, SQUALENE MONOXYGENASE 6  gene SQE6  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_function squalene monooxygenase activity|GO:0004506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_process sterol biosynthetic process|GO:0016126|10350086|TAS  product SQE6 (SQUALENE MONOXYGENASE 6); FAD binding / oxidoreductase/ squalene monooxygenase  note SQUALENE MONOXYGENASE 6 (SQE6); FUNCTIONS IN: squalene monooxygenase activity, oxidoreductase activity, FAD binding; INVOLVED IN: sterol biosynthetic process; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Squalene epoxidase (InterPro:IPR013698), Aromatic-ring hydroxylase-like (InterPro:IPR003042), FAD dependent oxidoreductase (InterPro:IPR006076); BEST Arabidopsis thaliana protein match is: SQP1; squalene monooxygenase (TAIR:AT5G24150.1); Has 1582 Blast hits to 1580 proteins in 395 species: Archae - 5; Bacteria - 599; Metazoa - 106; Fungi - 174; Plants - 91; Viruses - 0; Other Eukaryotes - 607 (source: NCBI BLink).  protein_id AT5G24160.1p  transcript_id AT5G24160.1  protein_id AT5G24160.1p  transcript_id AT5G24160.1  
At5g24165	chr5:008188622	0.0	W/8188622-8188673,8188799-8188956,8189070-8189087	AT5G24165.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23885.1); Has 20 Blast hits to 20 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G24165.1p  transcript_id AT5G24165.1  protein_id AT5G24165.1p  transcript_id AT5G24165.1  
At5g24170	chr5:008191248	0.0	C/8191248-8191355,8191116-8191169,8190855-8190928,8190169-8190286,8189934-8189992,8189744-8189822	AT5G24170.1  CDS  gene_syn K12G2.6, K12G2_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SFT2-like (InterPro:IPR011691); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23550.1); Has 462 Blast hits to 462 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 206; Fungi - 92; Plants - 65; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).  protein_id AT5G24170.1p  transcript_id AT5G24170.1  protein_id AT5G24170.1p  transcript_id AT5G24170.1  
At5g24180	chr5:008195600	0.0	W/8195600-8195706,8195907-8196528,8196721-8197119	AT5G24180.1  CDS  gene_syn K12G2.7, K12G2_7  go_component cellular_component|GO:0005575||ND  product lipase class 3-related  note lipase class 3-related; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: lipase class 3-related (TAIR:AT5G24220.1); Has 120 Blast hits to 120 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 117; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G24180.1p  transcript_id AT5G24180.1  protein_id AT5G24180.1p  transcript_id AT5G24180.1  
At5g24190	chr5:008199757	0.0	W/8199757-8200101,8200381-8200773	AT5G24190.1  CDS  gene_syn K12G2.8, K12G2_8  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: lipase class 3-related (TAIR:AT5G24180.1); Has 105 Blast hits to 105 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G24190.1p  transcript_id AT5G24190.1  protein_id AT5G24190.1p  transcript_id AT5G24190.1  
At5g24200	chr5:008203348	0.0	W/8203348-8203409,8203809-8204430,8205276-8205626	AT5G24200.1  CDS  gene_syn K12G2.9, K12G2_9  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_component cellular_component|GO:0005575||ND  product triacylglycerol lipase  note triacylglycerol lipase; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: lipase class 3 family protein (TAIR:AT5G24210.1); Has 118 Blast hits to 118 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G24200.1p  transcript_id AT5G24200.1  protein_id AT5G24200.1p  transcript_id AT5G24200.1  
At5g24205	chr5:008210822	0.0	C/8210822-8213086	AT5G24205.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G24205.1  
At5g24206	chr5:008213626	0.0	C/8213626-8214689	AT5G24206.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G24206.1  
At5g24210	chr5:008217877	0.0	W/8217877-8217953,8218320-8218941,8219113-8219466	AT5G24210.1  CDS  gene_syn MOP9.2, MOP9_2  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_component cellular_component|GO:0005575||ND  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product lipase class 3 family protein  note lipase class 3 family protein; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: triacylglycerol lipase (TAIR:AT5G24200.1); Has 116 Blast hits to 116 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G24210.1p  transcript_id AT5G24210.1  protein_id AT5G24210.1p  transcript_id AT5G24210.1  
At5g24220	chr5:008225861	0.0	W/8225861-8225973,8226170-8226797,8227162-8227551	AT5G24220.1  CDS  gene_syn MOP9.3, MOP9_3  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_component cellular_component|GO:0005575||ND  product lipase class 3-related  note lipase class 3-related; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: lipase class 3-related (TAIR:AT5G24180.1); Has 115 Blast hits to 115 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G24220.1p  transcript_id AT5G24220.1  protein_id AT5G24220.1p  transcript_id AT5G24220.1  
At5g24230	chr5:008229182	0.0	W/8229182-8229285,8229545-8230187,8230479-8230841	AT5G24230.1  CDS  gene_syn MOP9.4, MOP9_4  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: triacylglycerol lipase (TAIR:AT5G24200.1); Has 125 Blast hits to 125 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 7; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G24230.1p  transcript_id AT5G24230.1  protein_id AT5G24230.1p  transcript_id AT5G24230.1  
At5g24240	chr5:008231582	0.0	C/8231582-8232925,8231110-8231490	AT5G24240.1  CDS  gene_syn MOP9.5, MOP9_5  go_component peroxisome|GO:0005777|12154131|IDA  go_process protein modification process|GO:0006464||IEA  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_function inositol or phosphatidylinositol kinase activity|GO:0004428||ISS  product phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein  note phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein; FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor; INVOLVED IN: protein modification process; LOCATED IN: peroxisome; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3- and 4-kinase, catalytic (InterPro:IPR000403), Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein (TAIR:AT2G46500.2); Has 5992 Blast hits to 2753 proteins in 492 species: Archae - 0; Bacteria - 8; Metazoa - 2668; Fungi - 556; Plants - 1600; Viruses - 94; Other Eukaryotes - 1066 (source: NCBI BLink).  protein_id AT5G24240.1p  transcript_id AT5G24240.1  protein_id AT5G24240.1p  transcript_id AT5G24240.1  
At5g24250	chr5:008234581	0.0	C/8234581-8234652,8233696-8234304	AT5G24250.1  CDS  gene_syn MOP9.6, MOP9_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G24250.1p  transcript_id AT5G24250.1  protein_id AT5G24250.1p  transcript_id AT5G24250.1  
At5g24260	chr5:008237463	0.0	C/8237463-8237810,8236854-8237051,8236736-8236765,8235527-8236636,8234865-8235419	AT5G24260.1  CDS  gene_syn MOP9.8, MOP9_8  go_component membrane|GO:0016020||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type peptidase activity|GO:0008236||IEA  go_component membrane|GO:0016020||ISS  go_process proteolysis|GO:0006508||ISS  product prolyl oligopeptidase family protein  note prolyl oligopeptidase family protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase active site region (InterPro:IPR001375), Peptidase S9B, dipeptidylpeptidase IV N-terminal (InterPro:IPR002469); BEST Arabidopsis thaliana protein match is: acylaminoacyl-peptidase-related (TAIR:AT4G14570.1); Has 5370 Blast hits to 5328 proteins in 677 species: Archae - 122; Bacteria - 2377; Metazoa - 919; Fungi - 192; Plants - 99; Viruses - 0; Other Eukaryotes - 1661 (source: NCBI BLink).  protein_id AT5G24260.1p  transcript_id AT5G24260.1  protein_id AT5G24260.1p  transcript_id AT5G24260.1  
At5g24270	chr5:008240089	0.0	C/8240089-8240179,8239888-8239970,8239738-8239797,8239542-8239650,8239381-8239433,8239181-8239261,8238963-8239075,8238781-8238859	AT5G24270.1  CDS  gene_syn CALCINEURIN B-LIKE PROTEIN 4, CBL4, MOP9.19, MOP9_19, SALT OVERLY SENSITIVE 3, SOS3  gene SOS3  function encodes a calcium sensor that is essential for K+ nutrition, K+/Na+ selectivity, and salt tolerance. The protein is similar to calcineurin B. Lines carrying recessive mutations are hypersensitive to Na+ and Li+ stresses and is unable to grow in low K+. The growth defect is rescued by extracellular calcium.  go_component calcineurin complex|GO:0005955|9632394|ISS  go_process detection of calcium ion|GO:0005513|9405721|IMP  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_process cellular potassium ion homeostasis|GO:0030007|9405721|IMP  go_process hypotonic salinity response|GO:0042539|9405721|IMP  go_function calcium-dependent protein serine/threonine phosphatase activity|GO:0004723|9632394|ISS  go_function calcium ion binding|GO:0005509|11230129|ISS  go_function calcium ion binding|GO:0005509||ISS  product SOS3 (SALT OVERLY SENSITIVE 3); calcium ion binding / calcium-dependent protein serine/threonine phosphatase  note SALT OVERLY SENSITIVE 3 (SOS3); FUNCTIONS IN: calcium-dependent protein serine/threonine phosphatase activity, calcium ion binding; INVOLVED IN: hypotonic salinity response, N-terminal protein myristoylation, cellular potassium ion homeostasis, detection of calcium ion; LOCATED IN: calcineurin complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), Recoverin (InterPro:IPR001125), Calcineurin B protein (InterPro:IPR015757), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CBL8 (CALCINEURIN B-LIKE PROTEIN 8); calcium ion binding (TAIR:AT1G64480.1); Has 6538 Blast hits to 6527 proteins in 710 species: Archae - 0; Bacteria - 10; Metazoa - 3492; Fungi - 974; Plants - 1281; Viruses - 0; Other Eukaryotes - 781 (source: NCBI BLink).  protein_id AT5G24270.1p  transcript_id AT5G24270.1  protein_id AT5G24270.1p  transcript_id AT5G24270.1  
At5g24280	chr5:008261066	0.0	C/8261066-8261428,8260939-8260971,8260761-8260847,8260452-8260507,8260297-8260380,8259971-8260043,8259531-8259767,8259368-8259436,8258965-8259051,8258750-8258773,8258638-8258688,8258344-8258464,8257965-8258020,8257759-8257887,8257557-8257635,8257439-8257473,8257280-8257361,8257017-8257199,8256676-8256834,8256558-8256579,8256372-8256486,8256154-8256270,8255647-8255955,8255414-8255517,8255124-8255301,8254839-8254947,8254412-8254506,8254232-8254330,8254043-8254109,8253869-8253954,8253480-8253761,8253151-8253363,8252888-8253002,8252388-8252604,8252127-8252291,8251720-8252043,8251378-8251576	AT5G24280.1  CDS  gene_syn MOP9.10, MOP9_10  product unknown protein  note EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: DMS3 (DEFECTIVE IN MERISTEM SILENCING 3) (TAIR:AT3G49250.1); Has 61 Blast hits to 57 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 8; Fungi - 2; Plants - 46; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G24280.1p  transcript_id AT5G24280.1  protein_id AT5G24280.1p  transcript_id AT5G24280.1  
At5g24290	chr5:008265390	0.0	C/8265390-8265618,8264569-8265183,8264411-8264464,8264033-8264212,8263827-8263888,8263271-8263735	AT5G24290.2  CDS  gene_syn MOP9.11, MOP9_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane family protein  note integral membrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF125, transmembrane (InterPro:IPR008217); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT4G27870.1); Has 4376 Blast hits to 2767 proteins in 247 species: Archae - 7; Bacteria - 191; Metazoa - 1628; Fungi - 267; Plants - 147; Viruses - 58; Other Eukaryotes - 2078 (source: NCBI BLink).  protein_id AT5G24290.2p  transcript_id AT5G24290.2  protein_id AT5G24290.2p  transcript_id AT5G24290.2  
At5g24290	chr5:008265390	0.0	C/8265390-8265618,8264569-8265231,8264411-8264464,8264033-8264212,8263827-8263888,8263271-8263735	AT5G24290.1  CDS  gene_syn MOP9.11, MOP9_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane family protein  note integral membrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF125, transmembrane (InterPro:IPR008217); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT4G27870.1); Has 11981 Blast hits to 4294 proteins in 326 species: Archae - 14; Bacteria - 6062; Metazoa - 2232; Fungi - 422; Plants - 173; Viruses - 64; Other Eukaryotes - 3014 (source: NCBI BLink).  protein_id AT5G24290.1p  transcript_id AT5G24290.1  protein_id AT5G24290.1p  transcript_id AT5G24290.1  
At5g24300	chr5:008266934	0.0	W/8266934-8267189,8267484-8267911,8268005-8268082,8268223-8268347,8268467-8268548,8268733-8268906,8269024-8269105,8269188-8269279,8269370-8269432,8269527-8269616,8269868-8269992,8270202-8270310,8270419-8270474,8270572-8270611,8270702-8270860	AT5G24300.1  CDS  gene_syn ATSS1, MOP9.12, MOP9_12, SSI, SSI1, STARCH SYNTHASE 1, SUPPRESSOR OF SALICYLIC ACID INSENSITIVE, SUPPRESSOR OF SALICYLIC ACID INSENSITIVITY 1  gene SSI1  function SSI is a plastidial enzyme and crucial for the synthesis of normal amylopectin in the leaves of Arabidopsis. The absence of SSI results in a deficiency in the number of shorter glucans which in turn affect the formation and connection of the amylopectin clusters in starch.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_function starch synthase activity|GO:0009011||IEA  go_component chloroplast|GO:0009507|16045475|IDA  go_process amylopectin biosynthetic process|GO:0010021|16045475|IDA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product SSI1 (SUPPRESSOR OF SALICYLIC ACID INSENSITIVITY 1); starch synthase/ transferase, transferring glycosyl groups  note SUPPRESSOR OF SALICYLIC ACID INSENSITIVITY 1 (SSI1); FUNCTIONS IN: transferase activity, transferring glycosyl groups, starch synthase activity; INVOLVED IN: amylopectin biosynthetic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycogen/starch synthases, ADP-glucose type (InterPro:IPR011835), Starch synthase catalytic region (InterPro:IPR013534), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: AtSS2 (starch synthase 2); transferase, transferring glycosyl groups (TAIR:AT3G01180.1); Has 6609 Blast hits to 6599 proteins in 2214 species: Archae - 130; Bacteria - 2227; Metazoa - 0; Fungi - 123; Plants - 3582; Viruses - 0; Other Eukaryotes - 547 (source: NCBI BLink).  protein_id AT5G24300.1p  transcript_id AT5G24300.1  protein_id AT5G24300.1p  transcript_id AT5G24300.1  
At5g24310	chr5:008274637	0.0	W/8274637-8274732,8274850-8274932,8275012-8275162,8275272-8275371,8275475-8275567,8275646-8275688,8275763-8275857,8275941-8276068,8276149-8276325	AT5G24310.1  CDS  gene_syn ABIL3, ABL INTERACTOR-LIKE PROTEIN 3, MOP9.13, MOP9_13  gene ABIL3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3)  note ABL INTERACTOR-LIKE PROTEIN 3 (ABIL3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: ABIL2 (ABL INTERACTOR-LIKE PROTEIN 2) (TAIR:AT3G49290.2); Has 228 Blast hits to 205 proteins in 36 species: Archae - 0; Bacteria - 2; Metazoa - 102; Fungi - 8; Plants - 105; Viruses - 2; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT5G24310.1p  transcript_id AT5G24310.1  protein_id AT5G24310.1p  transcript_id AT5G24310.1  
At5g24310	chr5:008274637	0.0	W/8274637-8274732,8274850-8274932,8275012-8275162,8275272-8275371,8275475-8275567,8275646-8275688,8275763-8275919	AT5G24310.2  CDS  gene_syn ABIL3, ABL INTERACTOR-LIKE PROTEIN 3, MOP9.13, MOP9_13  gene ABIL3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3)  note ABL INTERACTOR-LIKE PROTEIN 3 (ABIL3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: ABIL2 (ABL INTERACTOR-LIKE PROTEIN 2) (TAIR:AT3G49290.2); Has 103 Blast hits to 103 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G24310.2p  transcript_id AT5G24310.2  protein_id AT5G24310.2p  transcript_id AT5G24310.2  
At5g24313	chr5:008277106	0.0	C/8277106-8277351	AT5G24313.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G24313.1p  transcript_id AT5G24313.1  protein_id AT5G24313.1p  transcript_id AT5G24313.1  
At5g24314	chr5:008277750	0.0	W/8277750-8277791,8277873-8277920,8277999-8278058,8278764-8279099	AT5G24314.1  CDS  gene_syn PDE225, PIGMENT DEFECTIVE 225, PTAC7  gene PTAC7  go_component nucleoid|GO:0009295|16326926|IDA  go_component plastid chromosome|GO:0009508|16326926|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product PTAC7  note PTAC7; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plastid chromosome, nucleoid; Has 35 Blast hits to 35 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G24314.1p  transcript_id AT5G24314.1  protein_id AT5G24314.1p  transcript_id AT5G24314.1  
At5g24316	chr5:008279860	0.0	C/8279860-8279935,8279710-8279750,8279505-8279612,8279273-8279425	AT5G24316.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product proline-rich family protein  note proline-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage; Has 29 Blast hits to 29 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 21; Fungi - 2; Plants - 3; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G24316.1p  transcript_id AT5G24316.1  protein_id AT5G24316.1p  transcript_id AT5G24316.1  
At5g24318	chr5:008283884	0.0	C/8283884-8283956,8282776-8283752,8282390-8282698	AT5G24318.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  product catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT2G16230.1); Has 1752 Blast hits to 1702 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1748; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G24318.2p  transcript_id AT5G24318.2  protein_id AT5G24318.2p  transcript_id AT5G24318.2  
At5g24318	chr5:008283884	0.0	C/8283884-8283956,8282776-8283752,8282404-8282698,8282285-8282316	AT5G24318.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  product catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT2G16230.1); Has 1746 Blast hits to 1695 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1742; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G24318.1p  transcript_id AT5G24318.1  protein_id AT5G24318.1p  transcript_id AT5G24318.1  
At5g24320	chr5:008286548	0.0	C/8286548-8287651,8286215-8286305,8285946-8286103,8285808-8285859,8285611-8285690,8285443-8285536,8284858-8285363	AT5G24320.1  CDS  gene_syn MOP9.16, MOP9_16  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_process signal transduction|GO:0007165||ISS  go_function signal transducer activity|GO:0004871||ISS  product WD-40 repeat family protein  note WD-40 repeat family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: signal transduction; LOCATED IN: heterotrimeric G-protein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein (TAIR:AT5G53500.1); Has 19932 Blast hits to 12538 proteins in 510 species: Archae - 54; Bacteria - 3747; Metazoa - 8428; Fungi - 3549; Plants - 1544; Viruses - 3; Other Eukaryotes - 2607 (source: NCBI BLink).  protein_id AT5G24320.1p  transcript_id AT5G24320.1  protein_id AT5G24320.1p  transcript_id AT5G24320.1  
At5g24320	chr5:008286548	0.0	C/8286548-8287651,8286215-8286305,8285946-8286103,8285808-8285859,8285611-8285690,8285443-8285548,8284858-8285363	AT5G24320.2  CDS  gene_syn MOP9.16, MOP9_16  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_process signal transduction|GO:0007165||ISS  go_function signal transducer activity|GO:0004871||ISS  product WD-40 repeat family protein  note WD-40 repeat family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: signal transduction; LOCATED IN: heterotrimeric G-protein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein (TAIR:AT5G53500.1); Has 19366 Blast hits to 12310 proteins in 508 species: Archae - 52; Bacteria - 3690; Metazoa - 8156; Fungi - 3441; Plants - 1498; Viruses - 3; Other Eukaryotes - 2526 (source: NCBI BLink).  protein_id AT5G24320.2p  transcript_id AT5G24320.2  protein_id AT5G24320.2p  transcript_id AT5G24320.2  
At5g24330	chr5:008296739	0.0	C/8296739-8296997,8296434-8296517,8296135-8296364,8295889-8295989,8295559-8295774,8295245-8295404	AT5G24330.1  CDS  gene_syn ATXR6, MOP9.7, MOP9_7, SDG34, SET DOMAIN PROTEIN 34  gene ATXR6  function Encodes a SET-domain protein. Contains a PCNA-binding domain. ATXR6 accumulates preferentially during the late G1 or S phase, suggesting that it plays a role in cell-cycle regulation or progression.  go_component nucleus|GO:0005634|16771839|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process anther dehiscence|GO:0009901|16771839|IMP  go_process regulation of cell cycle|GO:0051726|16771839|IEP  go_function DNA binding|GO:0003677||ISS  go_function protein binding|GO:0005515|16771839|IPI  product ATXR6; DNA binding / protein binding  note ATXR6; FUNCTIONS IN: protein binding, DNA binding; INVOLVED IN: regulation of cell cycle, anther dehiscence, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: ATXR5; DNA binding / protein binding (TAIR:AT5G09790.2); Has 3329 Blast hits to 2956 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 2575; Fungi - 210; Plants - 366; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink).  protein_id AT5G24330.1p  transcript_id AT5G24330.1  protein_id AT5G24330.1p  transcript_id AT5G24330.1  
At5g24340	chr5:008297328	0.0	W/8297328-8297696,8297979-8298110,8298196-8298735,8298904-8298980,8299088-8299223,8299552-8299755,8300097-8300156	AT5G24340.1  CDS  gene_syn K16H17.2, K16H17_2  go_component intracellular|GO:0005622||IEA  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function 3 -5  exonuclease activity|GO:0008408||IEA  go_component intracellular|GO:0005622||ISS  go_function nucleic acid binding|GO:0003676||ISS  go_function 3 -5  exonuclease activity|GO:0008408||ISS  product 3 -5  exonuclease domain-containing protein  note 3 -5  exonuclease domain-containing protein; FUNCTIONS IN: 3 -5  exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF82 (InterPro:IPR002782), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), 3&apos;-5&apos; exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: 3 -5  exonuclease domain-containing protein (TAIR:AT1G56310.1); Has 1357 Blast hits to 1334 proteins in 434 species: Archae - 55; Bacteria - 507; Metazoa - 272; Fungi - 104; Plants - 81; Viruses - 0; Other Eukaryotes - 338 (source: NCBI BLink).  protein_id AT5G24340.1p  transcript_id AT5G24340.1  protein_id AT5G24340.1p  transcript_id AT5G24340.1  
At5g24350	chr5:008301537	0.0	W/8301537-8301623,8301700-8301751,8301901-8302074,8302439-8302637,8302832-8303040,8303290-8304256,8304632-8305566,8305676-8305758,8305970-8306329,8306504-8307704,8307797-8308062,8308149-8310746	AT5G24350.1  CDS  gene_syn K16H17.4, K16H17_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Secretory pathway Sec39 (InterPro:IPR013244); Has 170 Blast hits to 130 proteins in 45 species: Archae - 0; Bacteria - 5; Metazoa - 90; Fungi - 13; Plants - 54; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G24350.1p  transcript_id AT5G24350.1  protein_id AT5G24350.1p  transcript_id AT5G24350.1  
At5g24352	chr5:008311092	0.0	W/8311092-8311123,8311219-8311282,8311442-8311465,8311554-8311613,8311708-8311767	AT5G24352.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT1G64625.2); Has 74 Blast hits to 74 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G24352.1p  transcript_id AT5G24352.1  protein_id AT5G24352.1p  transcript_id AT5G24352.1  
At5g24355	chr5:008314905	0.0	C/8314905-8315246	AT5G24355.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11220.1); Has 32 Blast hits to 32 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G24355.1p  transcript_id AT5G24355.1  protein_id AT5G24355.1p  transcript_id AT5G24355.1  
At5g24360	chr5:008316627	0.0	W/8316627-8316757,8316938-8317184,8317271-8318661,8318771-8318943,8319037-8319289,8319377-8319827	AT5G24360.1  CDS  gene_syn ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-1, ATIRE1-1, INOSITOL REQUIRING 1-1, IRE1-1, K16H17.7, K16H17_7  gene IRE1-1  go_component endomembrane system|GO:0012505||IEA  go_process mRNA processing|GO:0006397||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function endoribonuclease activity, producing 5 -phosphomonoesters|GO:0016891||IEA  go_function kinase activity|GO:0016301||ISS  product IRE1-1 (INOSITOL REQUIRING 1-1); ATP binding / endoribonuclease, producing 5 -phosphomonoesters / kinase/ protein kinase/ protein serine/threonine kinase  note INOSITOL REQUIRING 1-1 (IRE1-1); FUNCTIONS IN: endoribonuclease activity, producing 5 -phosphomonoesters, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, mRNA processing; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyrrolo-quinoline quinone beta-propeller repeat (InterPro:IPR018391), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Ribonuclease L (InterPro:IPR010513), PUG (InterPro:IPR006567), Quinonprotein alcohol dehydrogenase-like (InterPro:IPR011047); BEST Arabidopsis thaliana protein match is: IRE1A; endoribonuclease/ kinase (TAIR:AT2G17520.1); Has 75799 Blast hits to 75146 proteins in 2975 species: Archae - 53; Bacteria - 6775; Metazoa - 33392; Fungi - 6711; Plants - 14901; Viruses - 376; Other Eukaryotes - 13591 (source: NCBI BLink).  protein_id AT5G24360.1p  transcript_id AT5G24360.1  protein_id AT5G24360.1p  transcript_id AT5G24360.1  
At5g24370	chr5:008320969	0.0	W/8320969-8321544	AT5G24370.1  CDS  gene_syn K16H17.8, K16H17_8  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT3G49330.1); Has 22 Blast hits to 22 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G24370.1p  transcript_id AT5G24370.1  protein_id AT5G24370.1p  transcript_id AT5G24370.1  
At5g24380	chr5:008324098	0.0	W/8324098-8324610,8324700-8324797,8324887-8325021,8325108-8325297,8325384-8325501,8325585-8326525	AT5G24380.1  CDS  gene_syn ATYSL2, K16H17.9, K16H17_9, YELLOW STRIPE LIKE 2, YSL2  gene YSL2  function closest Arabidopsis homolog of Zea maize metal-phytosiderophore/metal-nicotianamine transporter ZmYS1  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process iron ion transport|GO:0006826|15753101|IDA  go_process oligopeptide transport|GO:0006857||ISS  go_process response to iron ion|GO:0010039|15753101|IEP  go_process response to zinc ion|GO:0010043|15753101|IEP  go_function oligopeptide transporter activity|GO:0015198||ISS  product YSL2 (YELLOW STRIPE LIKE 2); oligopeptide transporter  note YELLOW STRIPE LIKE 2 (YSL2); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: response to zinc ion, oligopeptide transport, response to iron ion, iron ion transport; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: YSL3 (YELLOW STRIPE LIKE 3); oligopeptide transporter (TAIR:AT5G53550.1); Has 959 Blast hits to 941 proteins in 268 species: Archae - 12; Bacteria - 409; Metazoa - 0; Fungi - 153; Plants - 249; Viruses - 1; Other Eukaryotes - 135 (source: NCBI BLink).  protein_id AT5G24380.1p  transcript_id AT5G24380.1  protein_id AT5G24380.1p  transcript_id AT5G24380.1  
At5g24390	chr5:008329099	0.0	C/8329099-8329238,8328684-8328819,8328553-8328602,8328300-8328353,8327004-8328210	AT5G24390.1  CDS  gene_syn K16H17.10, K16H17_10  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of Rab GTPase activity|GO:0032313||IEA  go_function RAB GTPase activator activity|GO:0005097||IEA  product RabGAP/TBC domain-containing protein  note RabGAP/TBC domain-containing protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: RAB GTPase activator (TAIR:AT3G49350.1); Has 3521 Blast hits to 3119 proteins in 173 species: Archae - 0; Bacteria - 9; Metazoa - 2196; Fungi - 527; Plants - 339; Viruses - 0; Other Eukaryotes - 450 (source: NCBI BLink).  protein_id AT5G24390.1p  transcript_id AT5G24390.1  protein_id AT5G24390.1p  transcript_id AT5G24390.1  
At5g24400	chr5:008331402	0.0	C/8331402-8331784,8331061-8331196,8330532-8330990	AT5G24400.1  CDS  gene_syn K16H17.11, K16H17_11, emb2024, embryo defective 2024  gene emb2024  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_function 6-phosphogluconolactonase activity|GO:0017057||IEA  go_component peroxisome|GO:0005777|17951448|IDA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function catalytic activity|GO:0003824||ISS  product emb2024 (embryo defective 2024); 6-phosphogluconolactonase/ catalytic  note embryo defective 2024 (emb2024); FUNCTIONS IN: 6-phosphogluconolactonase activity, catalytic activity; INVOLVED IN: embryonic development ending in seed dormancy, carbohydrate metabolic process; LOCATED IN: peroxisome, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glucosamine/galactosamine-6-phosphate isomerase (InterPro:IPR006148), 6-phosphogluconolactonase (InterPro:IPR005900); BEST Arabidopsis thaliana protein match is: glucosamine/galactosamine-6-phosphate isomerase family protein (TAIR:AT3G49360.1); Has 3220 Blast hits to 3220 proteins in 1016 species: Archae - 0; Bacteria - 1954; Metazoa - 327; Fungi - 237; Plants - 85; Viruses - 0; Other Eukaryotes - 617 (source: NCBI BLink).  protein_id AT5G24400.1p  transcript_id AT5G24400.1  protein_id AT5G24400.1p  transcript_id AT5G24400.1  
At5g24410	chr5:008333815	0.0	C/8333815-8333984,8333578-8333713,8332690-8333169	AT5G24410.1  CDS  gene_syn K16H17.12, K16H17_12  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process pentose-phosphate shunt|GO:0006098||IEA  go_process pentose-phosphate shunt, oxidative branch|GO:0009051||IEA  go_function 6-phosphogluconolactonase activity|GO:0017057||IEA  go_component cellular_component|GO:0005575||ND  product glucosamine/galactosamine-6-phosphate isomerase-related  note glucosamine/galactosamine-6-phosphate isomerase-related; FUNCTIONS IN: 6-phosphogluconolactonase activity; INVOLVED IN: pentose-phosphate shunt, pentose-phosphate shunt, oxidative branch, carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Glucosamine/galactosamine-6-phosphate isomerase (InterPro:IPR006148), 6-phosphogluconolactonase (InterPro:IPR005900); BEST Arabidopsis thaliana protein match is: glucosamine/galactosamine-6-phosphate isomerase family protein (TAIR:AT3G49360.1); Has 1983 Blast hits to 1982 proteins in 723 species: Archae - 0; Bacteria - 1134; Metazoa - 155; Fungi - 142; Plants - 85; Viruses - 0; Other Eukaryotes - 467 (source: NCBI BLink).  protein_id AT5G24410.1p  transcript_id AT5G24410.1  protein_id AT5G24410.1p  transcript_id AT5G24410.1  
At5g24420	chr5:008337728	0.0	C/8337728-8337879,8337503-8337638,8336943-8337413	AT5G24420.1  CDS  gene_syn K16H17.13, K16H17_13  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process pentose-phosphate shunt|GO:0006098||IEA  go_process pentose-phosphate shunt, oxidative branch|GO:0009051||IEA  go_function 6-phosphogluconolactonase activity|GO:0017057||IEA  go_component cellular_component|GO:0005575||ND  product glucosamine/galactosamine-6-phosphate isomerase-related  note glucosamine/galactosamine-6-phosphate isomerase-related; FUNCTIONS IN: 6-phosphogluconolactonase activity; INVOLVED IN: pentose-phosphate shunt, pentose-phosphate shunt, oxidative branch, carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glucosamine/galactosamine-6-phosphate isomerase (InterPro:IPR006148), 6-phosphogluconolactonase (InterPro:IPR005900); BEST Arabidopsis thaliana protein match is: glucosamine/galactosamine-6-phosphate isomerase family protein (TAIR:AT3G49360.1); Has 1726 Blast hits to 1726 proteins in 666 species: Archae - 0; Bacteria - 1008; Metazoa - 141; Fungi - 140; Plants - 83; Viruses - 0; Other Eukaryotes - 354 (source: NCBI BLink).  protein_id AT5G24420.1p  transcript_id AT5G24420.1  protein_id AT5G24420.1p  transcript_id AT5G24420.1  
At5g24430	chr5:008342371	0.0	C/8342371-8342913,8342081-8342211,8341952-8341993,8341720-8341828,8341537-8341615,8341031-8341327,8340792-8340901,8340464-8340568,8340197-8340259,8339626-8339793,8339390-8339527	AT5G24430.1  CDS  gene_syn K16H17.14, K16H17_14  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function calcium-dependent protein serine/threonine phosphatase activity|GO:0004723||ISS  go_function calcium ion binding|GO:0005509||ISS  go_function kinase activity|GO:0016301||ISS  product calcium-dependent protein kinase, putative / CDPK, putative  note calcium-dependent protein kinase, putative / CDPK, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), EF-Hand type (InterPro:IPR011992), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase, putative / CDPK, putative (TAIR:AT3G49370.1); Has 87409 Blast hits to 85987 proteins in 2057 species: Archae - 69; Bacteria - 8150; Metazoa - 38336; Fungi - 8514; Plants - 14244; Viruses - 492; Other Eukaryotes - 17604 (source: NCBI BLink).  protein_id AT5G24430.1p  transcript_id AT5G24430.1  protein_id AT5G24430.1p  transcript_id AT5G24430.1  
At5g24440	chr5:008347444	0.0	C/8347444-8347776,8347056-8347163,8346917-8346961,8346762-8346834,8346569-8346681,8346392-8346451,8346266-8346313,8346103-8346171,8345655-8345716,8345402-8345453	AT5G24440.1  CDS  gene_syn CID13, CTC-Interacting Domain 13, T31K7.2, T31K7_2  gene CID13  function RNA-binding protein, putative. Contains PAM2, PABC binding domain.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product CID13 (CTC-Interacting Domain 13); RNA binding / nucleic acid binding / nucleotide binding  note CTC-Interacting Domain 13 (CID13); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CID10; RNA binding / protein binding (TAIR:AT3G49390.2); Has 1710 Blast hits to 1519 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 893; Fungi - 223; Plants - 384; Viruses - 0; Other Eukaryotes - 210 (source: NCBI BLink).  protein_id AT5G24440.1p  transcript_id AT5G24440.1  protein_id AT5G24440.1p  transcript_id AT5G24440.1  
At5g24450	chr5:008348780	0.0	W/8348780-8348914,8349166-8349415,8349506-8349595,8349688-8349778,8349903-8349969,8350384-8350426,8350545-8350716,8350789-8350887,8351239-8351307,8351693-8351831,8352039-8352240,8352591-8352682,8352783-8352822,8352955-8353130	AT5G24450.1  CDS  gene_syn T31K7.3, T31K7_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49410.1); Has 598 Blast hits to 569 proteins in 160 species: Archae - 0; Bacteria - 19; Metazoa - 191; Fungi - 117; Plants - 57; Viruses - 10; Other Eukaryotes - 204 (source: NCBI BLink).  protein_id AT5G24450.1p  transcript_id AT5G24450.1  protein_id AT5G24450.1p  transcript_id AT5G24450.1  
At5g24460	chr5:008354815	0.0	W/8354815-8355717	AT5G24460.1  CDS  gene_syn T31K7.4, T31K7_4  go_component cell wall|GO:0005618|14595688|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 21 Blast hits to 21 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 17; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G24460.1p  transcript_id AT5G24460.1  protein_id AT5G24460.1p  transcript_id AT5G24460.1  
At5g24470	chr5:008358321	0.0	C/8358321-8358873,8357904-8358065,8357694-8357824,8357084-8357538,8356381-8356990,8356204-8356296	AT5G24470.1  CDS  gene_syn APRR5, ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 5, PRR5, PSEUDO-RESPONSE REGULATOR 5, T31K7.5, T31K7_5  gene APRR5  function Encodes a pseudo-response regulator whose mutation affects various circadian-associated biological events such as flowering time in the long-day photoperiod conditions, red light sensitivity of seedlings during early photomorphogenesis, and the period of free-running rhythms of certain clock-controlled genes including CCA1 and APRR1/TOC1 in constant white light.  go_component cellular_component|GO:0005575||ND  go_process circadian rhythm|GO:0007623|11100772|TAS  go_process circadian rhythm|GO:0007623|14634148|IMP  go_process photomorphogenesis|GO:0009640|14634148|IMP  go_process response to red light|GO:0010114|17076805|IEP  go_process response to far red light|GO:0010218|17076805|IEP  go_function two-component response regulator activity|GO:0000156||ISS  go_function transcription regulator activity|GO:0030528|12068096|TAS  product APRR5 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 5); transcription regulator/ two-component response regulator  note ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 5 (APRR5); FUNCTIONS IN: transcription regulator activity, two-component response regulator activity; INVOLVED IN: response to red light, response to far red light, photomorphogenesis, circadian rhythm; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver region (InterPro:IPR001789), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: APRR9 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9); protein binding / transcription regulator/ two-component response regulator (TAIR:AT2G46790.1); Has 37938 Blast hits to 37522 proteins in 1634 species: Archae - 139; Bacteria - 31842; Metazoa - 24; Fungi - 383; Plants - 1541; Viruses - 1; Other Eukaryotes - 4008 (source: NCBI BLink).  protein_id AT5G24470.1p  transcript_id AT5G24470.1  protein_id AT5G24470.1p  transcript_id AT5G24470.1  
At5g24480	chr5:008364552	0.0	C/8364552-8365036,8363831-8364398	AT5G24480.1  CDS  gene_syn T31K7.6, T31K7_6  go_component beta-galactosidase complex|GO:0009341||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  product beta-galactosidase  note beta-galactosidase; FUNCTIONS IN: beta-galactosidase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: beta-galactosidase complex; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944); BEST Arabidopsis thaliana protein match is: beta-galactosidase (TAIR:AT5G01080.1); Has 20 Blast hits to 17 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G24480.1p  transcript_id AT5G24480.1  protein_id AT5G24480.1p  transcript_id AT5G24480.1  
At5g24490	chr5:008365690	0.0	W/8365690-8365965,8366227-8366370,8366464-8366730,8366824-8366932,8367048-8367178	AT5G24490.1  CDS  gene_syn T31K7.7, T31K7_7  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process primary metabolic process|GO:0044238||IEA  go_function binding|GO:0005488||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 30S ribosomal protein, putative  note 30S ribosomal protein, putative; FUNCTIONS IN: structural constituent of ribosome, binding; INVOLVED IN: translation, primary metabolic process; LOCATED IN: ribosome, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S30Ae/sigma 54 modulation protein (InterPro:IPR003489); Has 1567 Blast hits to 1567 proteins in 629 species: Archae - 0; Bacteria - 1225; Metazoa - 1; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 308 (source: NCBI BLink).  protein_id AT5G24490.1p  transcript_id AT5G24490.1  protein_id AT5G24490.1p  transcript_id AT5G24490.1  
At5g24500	chr5:008367870	0.0	C/8367870-8368715,8367639-8367700,8367468-8367564	AT5G24500.1  CDS  gene_syn K18P6.2, K18P6_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 113 Blast hits to 109 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 57; Fungi - 5; Plants - 16; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT5G24500.1p  transcript_id AT5G24500.1  protein_id AT5G24500.1p  transcript_id AT5G24500.1  
At5g24510	chr5:008369798	0.0	C/8369798-8369866,8369426-8369638,8369295-8369348	AT5G24510.1  CDS  gene_syn K18P6.3, K18P6_3  go_process translational elongation|GO:0006414||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic ribosome|GO:0022626|17934214|IDA  go_process translational elongation|GO:0006414||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60s acidic ribosomal protein P1, putative  note 60s acidic ribosomal protein P1, putative; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosolic ribosome, ribosome; EXPRESSED IN: inflorescence meristem, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P1 (RPP1A) (TAIR:AT1G01100.4); Has 914 Blast hits to 914 proteins in 252 species: Archae - 68; Bacteria - 0; Metazoa - 388; Fungi - 189; Plants - 119; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).  protein_id AT5G24510.1p  transcript_id AT5G24510.1  protein_id AT5G24510.1p  transcript_id AT5G24510.1  
At5g24520	chr5:008371708	0.0	C/8371708-8372733	AT5G24520.1  CDS  gene_syn K18P6.4, K18P6_4, TRANSPARENT TESTA GLABRA 1, TTG, TTG1, UNARMED 23, URM23  gene TTG1  function Required for the accumulation of purple anthocyanins in leaves and stems. Involved in trichome and root hair development. Controls epidermal cell fate specification. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Based on clonal analysis and other methonds TTG1 has been shown to act non-cell autonomously and to move via plasmodesmata between cells.Localization and levels of TTG1 affect patterning of leaf trichomes.  go_component nucleus|GO:0005634|18434419|IDA  go_component cytoplasm|GO:0005737|18547143|IDA  go_process epidermal cell fate specification|GO:0009957|7813791|IMP  go_process trichome differentiation|GO:0010026|10402433|IMP  go_process regulation of protein localization|GO:0032880|18434419|IMP  go_process cell fate commitment|GO:0045165|10402433|IMP  go_function nucleotide binding|GO:0000166||ISS  go_function DNA binding|GO:0003677|18434419|IDA  go_function protein binding|GO:0005515|18434419|IPI  product TTG1 (TRANSPARENT TESTA GLABRA 1); DNA binding / nucleotide binding / protein binding  note TRANSPARENT TESTA GLABRA 1 (TTG1); FUNCTIONS IN: protein binding, DNA binding, nucleotide binding; INVOLVED IN: trichome differentiation, epidermal cell fate specification, regulation of protein localization, cell fate commitment; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: ATAN11 (ANTHOCYANIN11); nucleotide binding (TAIR:AT1G12910.1); Has 4487 Blast hits to 4092 proteins in 267 species: Archae - 8; Bacteria - 276; Metazoa - 1922; Fungi - 1100; Plants - 573; Viruses - 0; Other Eukaryotes - 608 (source: NCBI BLink).  protein_id AT5G24520.1p  transcript_id AT5G24520.1  protein_id AT5G24520.1p  transcript_id AT5G24520.1  
At5g24520	chr5:008371708	0.0	C/8371708-8372733	AT5G24520.2  CDS  gene_syn K18P6.4, K18P6_4, TRANSPARENT TESTA GLABRA 1, TTG, TTG1, UNARMED 23, URM23  gene TTG1  function Required for the accumulation of purple anthocyanins in leaves and stems. Involved in trichome and root hair development. Controls epidermal cell fate specification. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Based on clonal analysis and other methonds TTG1 has been shown to act non-cell autonomously and to move via plasmodesmata between cells.Localization and levels of TTG1 affect patterning of leaf trichomes.  go_component nucleus|GO:0005634|18434419|IDA  go_component cytoplasm|GO:0005737|18547143|IDA  go_process epidermal cell fate specification|GO:0009957|7813791|IMP  go_process trichome differentiation|GO:0010026|10402433|IMP  go_process regulation of protein localization|GO:0032880|18434419|IMP  go_process cell fate commitment|GO:0045165|10402433|IMP  go_function nucleotide binding|GO:0000166||ISS  go_function DNA binding|GO:0003677|18434419|IDA  go_function protein binding|GO:0005515|18434419|IPI  product TTG1 (TRANSPARENT TESTA GLABRA 1); DNA binding / nucleotide binding / protein binding  note TRANSPARENT TESTA GLABRA 1 (TTG1); FUNCTIONS IN: protein binding, DNA binding, nucleotide binding; INVOLVED IN: trichome differentiation, epidermal cell fate specification, regulation of protein localization, cell fate commitment; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: ATAN11 (ANTHOCYANIN11); nucleotide binding (TAIR:AT1G12910.1); Has 4487 Blast hits to 4092 proteins in 267 species: Archae - 8; Bacteria - 276; Metazoa - 1922; Fungi - 1100; Plants - 573; Viruses - 0; Other Eukaryotes - 608 (source: NCBI BLink).  protein_id AT5G24520.2p  transcript_id AT5G24520.2  protein_id AT5G24520.2p  transcript_id AT5G24520.2  
At5g24520	chr5:008371708	0.0	C/8371708-8372733	AT5G24520.3  CDS  gene_syn K18P6.4, K18P6_4, TRANSPARENT TESTA GLABRA 1, TTG, TTG1, UNARMED 23, URM23  gene TTG1  function Required for the accumulation of purple anthocyanins in leaves and stems. Involved in trichome and root hair development. Controls epidermal cell fate specification. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Based on clonal analysis and other methonds TTG1 has been shown to act non-cell autonomously and to move via plasmodesmata between cells.Localization and levels of TTG1 affect patterning of leaf trichomes.  go_component nucleus|GO:0005634|18434419|IDA  go_component cytoplasm|GO:0005737|18547143|IDA  go_process epidermal cell fate specification|GO:0009957|7813791|IMP  go_process trichome differentiation|GO:0010026|10402433|IMP  go_process regulation of protein localization|GO:0032880|18434419|IMP  go_process cell fate commitment|GO:0045165|10402433|IMP  go_function nucleotide binding|GO:0000166||ISS  go_function DNA binding|GO:0003677|18434419|IDA  go_function protein binding|GO:0005515|18434419|IPI  product TTG1 (TRANSPARENT TESTA GLABRA 1); DNA binding / nucleotide binding / protein binding  note TRANSPARENT TESTA GLABRA 1 (TTG1); FUNCTIONS IN: protein binding, DNA binding, nucleotide binding; INVOLVED IN: trichome differentiation, epidermal cell fate specification, regulation of protein localization, cell fate commitment; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: ATAN11 (ANTHOCYANIN11); nucleotide binding (TAIR:AT1G12910.1); Has 4487 Blast hits to 4092 proteins in 267 species: Archae - 8; Bacteria - 276; Metazoa - 1922; Fungi - 1100; Plants - 573; Viruses - 0; Other Eukaryotes - 608 (source: NCBI BLink).  protein_id AT5G24520.3p  transcript_id AT5G24520.3  protein_id AT5G24520.3p  transcript_id AT5G24520.3  
At5g24530	chr5:008378964	0.0	W/8378964-8379161,8379430-8379677,8381929-8382253,8382900-8383154	AT5G24530.1  CDS  gene_syn DMR6, DOWNY MILDEW RESISTANT 6, K18P6.6, K18P6_6  gene DMR6  function Encodes a putative 2OG-Fe(II) oxygenase that is defense-associated but required for susceptibility to downy mildew.  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process response to bacterium|GO:0009617|15986928|IGI  go_process response to fungus|GO:0009620|15986928|IGI  go_process response to fungus|GO:0009620|18248595|IEP  go_process flavonoid biosynthetic process|GO:0009813||ISS  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product DMR6 (DOWNY MILDEW RESISTANT 6); oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors  note DOWNY MILDEW RESISTANT 6 (DMR6); FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: response to fungus, response to bacterium, flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G10490.1); Has 5946 Blast hits to 5920 proteins in 685 species: Archae - 0; Bacteria - 716; Metazoa - 88; Fungi - 652; Plants - 3098; Viruses - 0; Other Eukaryotes - 1392 (source: NCBI BLink).  protein_id AT5G24530.1p  transcript_id AT5G24530.1  protein_id AT5G24530.1p  transcript_id AT5G24530.1  
At5g24540	chr5:008387875	0.0	C/8387875-8388027,8387526-8387595,8387361-8387416,8387131-8387206,8386927-8387004,8386742-8386829,8386390-8386645,8386109-8386227,8385788-8386005,8385634-8385671,8385429-8385531,8385211-8385319,8384876-8385116	AT5G24540.1  CDS  gene_syn BETA GLUCOSIDASE 31, BGLU31, K18P6.7, K18P6_7  gene BGLU31  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_process response to other organism|GO:0051707|16531493|IEP  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU31 (BETA GLUCOSIDASE 31); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 31 (BGLU31); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: stem, sepal; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU32 (BETA GLUCOSIDASE 32); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT5G24550.1); Has 5796 Blast hits to 5551 proteins in 798 species: Archae - 98; Bacteria - 3160; Metazoa - 609; Fungi - 133; Plants - 850; Viruses - 0; Other Eukaryotes - 946 (source: NCBI BLink).  protein_id AT5G24540.1p  transcript_id AT5G24540.1  protein_id AT5G24540.1p  transcript_id AT5G24540.1  
At5g24550	chr5:008395150	0.0	C/8395150-8395302,8394903-8394972,8394741-8394796,8394445-8394520,8394256-8394333,8393966-8394053,8393614-8393869,8393328-8393446,8393007-8393224,8392835-8392872,8392624-8392726,8392402-8392510,8392059-8392299	AT5G24550.1  CDS  gene_syn BETA GLUCOSIDASE 32, BGLU32, K18P6.8, K18P6_8  gene BGLU32  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_process response to other organism|GO:0051707|16531493|IEP  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU32 (BETA GLUCOSIDASE 32); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 32 (BGLU32); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU31 (BETA GLUCOSIDASE 31); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT5G24540.1); Has 5791 Blast hits to 5548 proteins in 797 species: Archae - 98; Bacteria - 3154; Metazoa - 608; Fungi - 133; Plants - 851; Viruses - 0; Other Eukaryotes - 947 (source: NCBI BLink).  protein_id AT5G24550.1p  transcript_id AT5G24550.1  protein_id AT5G24550.1p  transcript_id AT5G24550.1  
At5g24557	chr5:008401543	0.0	W/8401543-8401897	AT5G24557.1  pseudogenic_transcript  pseudo  function Encodes a ECA1 gametogenesis related family protein [pseudogene]  
At5g24560	chr5:008402205	0.0	W/8402205-8402453,8402683-8402801,8402879-8403266	AT5G24560.1  CDS  gene_syn AtPP2-B12, K18P6.9, K18P6_9, Phloem protein 2-B12  gene AtPP2-B12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function carbohydrate binding|GO:0030246|12529520|ISS  product AtPP2-B12 (Phloem protein 2-B12); carbohydrate binding  note Phloem protein 2-B12 (AtPP2-B12); FUNCTIONS IN: carbohydrate binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: AtPP2-B1 (Phloem protein 2-B1); carbohydrate binding (TAIR:AT2G02230.1); Has 329 Blast hits to 314 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 329; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G24560.1p  transcript_id AT5G24560.1  protein_id AT5G24560.1p  transcript_id AT5G24560.1  
At5g24570	chr5:008405814	0.0	C/8405814-8406026	AT5G24570.1  CDS  gene_syn K18P6.10, K18P6_10  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G24570.1p  transcript_id AT5G24570.1  protein_id AT5G24570.1p  transcript_id AT5G24570.1  
At5g24580	chr5:008412067	0.0	C/8412067-8412087,8411745-8411964,8411278-8411544,8410394-8410842	AT5G24580.2  CDS  gene_syn K18P6.11, K18P6_11  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_process copper ion transport|GO:0006825||ISS  go_function copper ion binding|GO:0005507||ISS  product copper-binding family protein  note copper-binding family protein; FUNCTIONS IN: copper ion binding, metal ion binding; INVOLVED IN: copper ion transport, metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: ATFP3; metal ion binding / transition metal ion binding (TAIR:AT5G63530.2); Has 7886 Blast hits to 2928 proteins in 276 species: Archae - 24; Bacteria - 316; Metazoa - 4751; Fungi - 264; Plants - 997; Viruses - 160; Other Eukaryotes - 1374 (source: NCBI BLink).  protein_id AT5G24580.2p  transcript_id AT5G24580.2  protein_id AT5G24580.2p  transcript_id AT5G24580.2  
At5g24580	chr5:008412067	0.0	C/8412067-8412087,8411745-8411967,8411278-8411535,8410394-8410842	AT5G24580.3  CDS  gene_syn K18P6.11, K18P6_11  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_process copper ion transport|GO:0006825||ISS  go_function copper ion binding|GO:0005507||ISS  product copper-binding family protein  note copper-binding family protein; FUNCTIONS IN: copper ion binding, metal ion binding; INVOLVED IN: copper ion transport, metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: ATFP3; metal ion binding / transition metal ion binding (TAIR:AT5G63530.2).  protein_id AT5G24580.3p  transcript_id AT5G24580.3  protein_id AT5G24580.3p  transcript_id AT5G24580.3  
At5g24580	chr5:008412067	0.0	C/8412067-8412087,8411745-8411967,8411278-8411544,8410394-8410842	AT5G24580.1  CDS  gene_syn K18P6.11, K18P6_11  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_process copper ion transport|GO:0006825||ISS  go_function copper ion binding|GO:0005507||ISS  product copper-binding family protein  note copper-binding family protein; FUNCTIONS IN: copper ion binding, metal ion binding; INVOLVED IN: copper ion transport, metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: ATFP3; metal ion binding / transition metal ion binding (TAIR:AT5G63530.2); Has 7818 Blast hits to 2913 proteins in 264 species: Archae - 24; Bacteria - 308; Metazoa - 4768; Fungi - 268; Plants - 1006; Viruses - 159; Other Eukaryotes - 1285 (source: NCBI BLink).  protein_id AT5G24580.1p  transcript_id AT5G24580.1  protein_id AT5G24580.1p  transcript_id AT5G24580.1  
At5g24590	chr5:008418546	0.0	C/8418546-8418723,8418073-8418353,8417723-8417980,8417179-8417637,8416920-8417099	AT5G24590.2  CDS  gene_syn ANAC091, ARABIDOPSIS NAC 091, TCV-INTERACTING PROTEIN, TIP  gene TIP  function Member of NAc protein family. Interacts with turnip crinkle virus (TCV) capsid protein. Transcription factor involved in regulating the defense response of Arabidopsis to TCV.  go_component nucleus|GO:0005634|15629774|IDA  go_process multicellular organismal development|GO:0007275||ISS  go_process defense response to virus|GO:0051607|11041886|IPI  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|15629774|IDA  go_function transcription coactivator activity|GO:0003713|11041886|IDA  product TIP (TCV-INTERACTING PROTEIN); transcription coactivator/ transcription factor  note TCV-INTERACTING PROTEIN (TIP); FUNCTIONS IN: transcription coactivator activity, transcription factor activity; INVOLVED IN: defense response to virus, multicellular organismal development; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac062 (Arabidopsis NAC domain containing protein 62); transcription factor (TAIR:AT3G49530.1); Has 1575 Blast hits to 1573 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1575; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G24590.2p  transcript_id AT5G24590.2  protein_id AT5G24590.2p  transcript_id AT5G24590.2  
At5g24593	chr5:008419767	0.0	W/8419767-8420018	AT5G24593.1  CDS  go_component mitochondrion|GO:0005739||IEA  product unknown protein  note unknown protein; LOCATED IN: mitochondrion; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G24593.1p  transcript_id AT5G24593.1  protein_id AT5G24593.1p  transcript_id AT5G24593.1  
At5g24600	chr5:008423181	0.0	C/8423181-8423342,8421790-8422374	AT5G24600.1  CDS  gene_syn K18P6.13, K18P6_13  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF599 (InterPro:IPR006747); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18215.1); Has 158 Blast hits to 157 proteins in 38 species: Archae - 0; Bacteria - 50; Metazoa - 0; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT5G24600.1p  transcript_id AT5G24600.1  protein_id AT5G24600.1p  transcript_id AT5G24600.1  
At5g24610	chr5:008428577	0.0	W/8428577-8429017	AT5G24610.1  CDS  gene_syn K18P6.15, K18P6_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49550.1); Has 29 Blast hits to 29 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G24610.1p  transcript_id AT5G24610.1  protein_id AT5G24610.1p  transcript_id AT5G24610.1  
At5g24620	chr5:008430918	0.0	W/8430918-8431675,8431785-8432289	AT5G24620.1  CDS  gene_syn K18P6.16, K18P6_16  go_component endomembrane system|GO:0012505||IEA  go_process response to other organism|GO:0051707||ISS  product thaumatin-like protein, putative  note thaumatin-like protein, putative; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: pathogenesis-related thaumatin family protein (TAIR:AT4G36010.2); Has 18161 Blast hits to 10531 proteins in 819 species: Archae - 16; Bacteria - 1642; Metazoa - 6110; Fungi - 2632; Plants - 4128; Viruses - 457; Other Eukaryotes - 3176 (source: NCBI BLink).  protein_id AT5G24620.1p  transcript_id AT5G24620.1  protein_id AT5G24620.1p  transcript_id AT5G24620.1  
At5g24630	chr5:008435632	0.0	C/8435632-8435682,8435291-8435537,8435056-8435117,8434440-8434671,8434236-8434361,8434086-8434150,8433956-8434009,8433677-8433785,8433361-8433407,8433249-8433275,8432991-8433066,8432713-8432858,8432523-8432621	AT5G24630.5  CDS  gene_syn BIN4, K18P6.17, K18P6_17, brassinosteroid-insensitive4  gene BIN4  function This gene is predicted to encode a protein that forms part of the topoisomerase VI complex. BIN4 is a nuclear-localized protein that can bind DNA. bin4 mutants are brassinolide-insensitive dwarves with severely reduced cell size in leaves, roots, and hypocotyls. Proper development of root hairs and trichomes is also disrupted in bin4 mutants and they have elevated levels of double strand breaks in their cotyledon cells.  go_component nucleus|GO:0005634|18055605|IDA  go_component DNA topoisomerase complex (ATP-hydrolyzing)|GO:0009330|18055605|IPI  go_process epidermal cell differentiation|GO:0009913|17951446|IMP  go_process trichome morphogenesis|GO:0010090|18055605|IMP  go_process positive regulation of cell growth|GO:0030307|18055605|IMP  go_process DNA endoreduplication|GO:0042023|18055605|IMP  go_process root development|GO:0048364|18055605|IMP  go_process shoot development|GO:0048367|18055605|IMP  go_process chromosome organization|GO:0051276|18055605|IMP  go_function double-stranded DNA binding|GO:0003690|18055605|IDA  product BIN4 (brassinosteroid-insensitive4); double-stranded DNA binding  note brassinosteroid-insensitive4 (BIN4); FUNCTIONS IN: double-stranded DNA binding; INVOLVED IN: in 7 processes; LOCATED IN: DNA topoisomerase complex (ATP-hydrolyzing), nucleus; EXPRESSED IN: cotyledon vascular system, cotyledon, root tip, leaf, leaf trichome.  protein_id AT5G24630.5p  transcript_id AT5G24630.5  protein_id AT5G24630.5p  transcript_id AT5G24630.5  
At5g24630	chr5:008435632	0.0	C/8435632-8435682,8435291-8435537,8435056-8435117,8434440-8434671,8434236-8434361,8434086-8434162,8433956-8434009,8433677-8433785,8433361-8433407,8433249-8433275,8432991-8433066,8432713-8432858,8432523-8432621	AT5G24630.3  CDS  gene_syn BIN4, K18P6.17, K18P6_17, brassinosteroid-insensitive4  gene BIN4  function This gene is predicted to encode a protein that forms part of the topoisomerase VI complex. BIN4 is a nuclear-localized protein that can bind DNA. bin4 mutants are brassinolide-insensitive dwarves with severely reduced cell size in leaves, roots, and hypocotyls. Proper development of root hairs and trichomes is also disrupted in bin4 mutants and they have elevated levels of double strand breaks in their cotyledon cells.  go_component nucleus|GO:0005634|18055605|IDA  go_component DNA topoisomerase complex (ATP-hydrolyzing)|GO:0009330|18055605|IPI  go_process epidermal cell differentiation|GO:0009913|17951446|IMP  go_process trichome morphogenesis|GO:0010090|18055605|IMP  go_process positive regulation of cell growth|GO:0030307|18055605|IMP  go_process DNA endoreduplication|GO:0042023|18055605|IMP  go_process root development|GO:0048364|18055605|IMP  go_process shoot development|GO:0048367|18055605|IMP  go_process chromosome organization|GO:0051276|18055605|IMP  go_function double-stranded DNA binding|GO:0003690|18055605|IDA  product BIN4 (brassinosteroid-insensitive4); double-stranded DNA binding  note brassinosteroid-insensitive4 (BIN4); FUNCTIONS IN: double-stranded DNA binding; INVOLVED IN: in 7 processes; LOCATED IN: DNA topoisomerase complex (ATP-hydrolyzing), nucleus; EXPRESSED IN: cotyledon vascular system, cotyledon, root tip, leaf, leaf trichome.  protein_id AT5G24630.3p  transcript_id AT5G24630.3  protein_id AT5G24630.3p  transcript_id AT5G24630.3  
At5g24630	chr5:008435632	0.0	C/8435632-8435682,8435291-8435537,8435056-8435117,8434440-8434671,8434236-8434361,8434086-8434162,8433956-8434009,8433677-8433785,8433361-8433407,8433249-8433275,8432991-8433066,8432713-8432858,8432523-8432621	AT5G24630.4  CDS  gene_syn BIN4, K18P6.17, K18P6_17, brassinosteroid-insensitive4  gene BIN4  function This gene is predicted to encode a protein that forms part of the topoisomerase VI complex. BIN4 is a nuclear-localized protein that can bind DNA. bin4 mutants are brassinolide-insensitive dwarves with severely reduced cell size in leaves, roots, and hypocotyls. Proper development of root hairs and trichomes is also disrupted in bin4 mutants and they have elevated levels of double strand breaks in their cotyledon cells.  go_component nucleus|GO:0005634|18055605|IDA  go_component DNA topoisomerase complex (ATP-hydrolyzing)|GO:0009330|18055605|IPI  go_process epidermal cell differentiation|GO:0009913|17951446|IMP  go_process trichome morphogenesis|GO:0010090|18055605|IMP  go_process positive regulation of cell growth|GO:0030307|18055605|IMP  go_process DNA endoreduplication|GO:0042023|18055605|IMP  go_process root development|GO:0048364|18055605|IMP  go_process shoot development|GO:0048367|18055605|IMP  go_process chromosome organization|GO:0051276|18055605|IMP  go_function double-stranded DNA binding|GO:0003690|18055605|IDA  product BIN4 (brassinosteroid-insensitive4); double-stranded DNA binding  note brassinosteroid-insensitive4 (BIN4); FUNCTIONS IN: double-stranded DNA binding; INVOLVED IN: in 7 processes; LOCATED IN: DNA topoisomerase complex (ATP-hydrolyzing), nucleus; EXPRESSED IN: cotyledon vascular system, cotyledon, root tip, leaf, leaf trichome.  protein_id AT5G24630.4p  transcript_id AT5G24630.4  protein_id AT5G24630.4p  transcript_id AT5G24630.4  
At5g24630	chr5:008435632	0.0	C/8435632-8435682,8435291-8435537,8435056-8435117,8434440-8434671,8434330-8434361,8434086-8434202,8433956-8434009,8433677-8433785,8433361-8433407,8433249-8433275,8432991-8433066,8432713-8432858,8432523-8432621	AT5G24630.2  CDS  gene_syn BIN4, K18P6.17, K18P6_17, brassinosteroid-insensitive4  gene BIN4  function This gene is predicted to encode a protein that forms part of the topoisomerase VI complex. BIN4 is a nuclear-localized protein that can bind DNA. bin4 mutants are brassinolide-insensitive dwarves with severely reduced cell size in leaves, roots, and hypocotyls. Proper development of root hairs and trichomes is also disrupted in bin4 mutants and they have elevated levels of double strand breaks in their cotyledon cells.  go_component nucleus|GO:0005634|18055605|IDA  go_component DNA topoisomerase complex (ATP-hydrolyzing)|GO:0009330|18055605|IPI  go_process epidermal cell differentiation|GO:0009913|17951446|IMP  go_process trichome morphogenesis|GO:0010090|18055605|IMP  go_process positive regulation of cell growth|GO:0030307|18055605|IMP  go_process DNA endoreduplication|GO:0042023|18055605|IMP  go_process root development|GO:0048364|18055605|IMP  go_process shoot development|GO:0048367|18055605|IMP  go_process chromosome organization|GO:0051276|18055605|IMP  go_function double-stranded DNA binding|GO:0003690|18055605|IDA  product BIN4 (brassinosteroid-insensitive4); double-stranded DNA binding  note brassinosteroid-insensitive4 (BIN4); FUNCTIONS IN: double-stranded DNA binding; INVOLVED IN: in 7 processes; LOCATED IN: DNA topoisomerase complex (ATP-hydrolyzing), nucleus; EXPRESSED IN: cotyledon vascular system, cotyledon, root tip, leaf, leaf trichome.  protein_id AT5G24630.2p  transcript_id AT5G24630.2  protein_id AT5G24630.2p  transcript_id AT5G24630.2  
At5g24630	chr5:008435632	0.0	C/8435632-8435682,8435291-8435537,8435056-8435117,8434440-8434674,8434236-8434361,8434086-8434162,8433956-8434009,8433677-8433785,8433361-8433407,8433249-8433275,8432991-8433066,8432713-8432858,8432523-8432621	AT5G24630.1  CDS  gene_syn BIN4, K18P6.17, K18P6_17, brassinosteroid-insensitive4  gene BIN4  function This gene is predicted to encode a protein that forms part of the topoisomerase VI complex. BIN4 is a nuclear-localized protein that can bind DNA. bin4 mutants are brassinolide-insensitive dwarves with severely reduced cell size in leaves, roots, and hypocotyls. Proper development of root hairs and trichomes is also disrupted in bin4 mutants and they have elevated levels of double strand breaks in their cotyledon cells.  go_component nucleus|GO:0005634|18055605|IDA  go_component DNA topoisomerase complex (ATP-hydrolyzing)|GO:0009330|18055605|IPI  go_process epidermal cell differentiation|GO:0009913|17951446|IMP  go_process trichome morphogenesis|GO:0010090|18055605|IMP  go_process positive regulation of cell growth|GO:0030307|18055605|IMP  go_process DNA endoreduplication|GO:0042023|18055605|IMP  go_process root development|GO:0048364|18055605|IMP  go_process shoot development|GO:0048367|18055605|IMP  go_process chromosome organization|GO:0051276|18055605|IMP  go_function double-stranded DNA binding|GO:0003690|18055605|IDA  product BIN4 (brassinosteroid-insensitive4); double-stranded DNA binding  note brassinosteroid-insensitive4 (BIN4); FUNCTIONS IN: double-stranded DNA binding; INVOLVED IN: in 7 processes; LOCATED IN: DNA topoisomerase complex (ATP-hydrolyzing), nucleus; EXPRESSED IN: 6 plant structures; Has 5032 Blast hits to 3161 proteins in 292 species: Archae - 6; Bacteria - 1195; Metazoa - 1840; Fungi - 534; Plants - 177; Viruses - 34; Other Eukaryotes - 1246 (source: NCBI BLink).  protein_id AT5G24630.1p  transcript_id AT5G24630.1  protein_id AT5G24630.1p  transcript_id AT5G24630.1  
At5g24630	chr5:008435632	0.0	C/8435632-8435682,8435291-8435537,8435056-8435129,8434440-8434671,8434236-8434361,8434086-8434162,8433956-8434009,8433677-8433785,8433361-8433407,8433249-8433275,8432991-8433066,8432713-8432858,8432523-8432621	AT5G24630.6  CDS  gene_syn BIN4, K18P6.17, K18P6_17, brassinosteroid-insensitive4  gene BIN4  function This gene is predicted to encode a protein that forms part of the topoisomerase VI complex. BIN4 is a nuclear-localized protein that can bind DNA. bin4 mutants are brassinolide-insensitive dwarves with severely reduced cell size in leaves, roots, and hypocotyls. Proper development of root hairs and trichomes is also disrupted in bin4 mutants and they have elevated levels of double strand breaks in their cotyledon cells.  go_component nucleus|GO:0005634|18055605|IDA  go_component DNA topoisomerase complex (ATP-hydrolyzing)|GO:0009330|18055605|IPI  go_process epidermal cell differentiation|GO:0009913|17951446|IMP  go_process trichome morphogenesis|GO:0010090|18055605|IMP  go_process positive regulation of cell growth|GO:0030307|18055605|IMP  go_process DNA endoreduplication|GO:0042023|18055605|IMP  go_process root development|GO:0048364|18055605|IMP  go_process shoot development|GO:0048367|18055605|IMP  go_process chromosome organization|GO:0051276|18055605|IMP  go_function double-stranded DNA binding|GO:0003690|18055605|IDA  product BIN4 (brassinosteroid-insensitive4); double-stranded DNA binding  note brassinosteroid-insensitive4 (BIN4); FUNCTIONS IN: double-stranded DNA binding; INVOLVED IN: in 7 processes; LOCATED IN: DNA topoisomerase complex (ATP-hydrolyzing), nucleus; EXPRESSED IN: cotyledon vascular system, cotyledon, root tip, leaf, leaf trichome.  protein_id AT5G24630.6p  transcript_id AT5G24630.6  protein_id AT5G24630.6p  transcript_id AT5G24630.6  
At5g24640	chr5:008436404	0.0	W/8436404-8436760	AT5G24640.1  CDS  gene_syn K18P6.18, K18P6_18  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41730.1); Has 13 Blast hits to 13 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G24640.1p  transcript_id AT5G24640.1  protein_id AT5G24640.1p  transcript_id AT5G24640.1  
At5g24650	chr5:008437123	0.0	W/8437123-8437410,8437510-8437625,8438190-8438313,8438417-8438565,8438666-8438728,8438820-8438859	AT5G24650.1  CDS  gene_syn K18P6.19, K18P6_19  go_component vacuole|GO:0005773|14760709|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process protein transport|GO:0015031||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744||ISS  go_process protein transport|GO:0015031||ISS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein  note mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein; FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: chloroplast, plasma membrane, vacuole, mitochondrial inner membrane presequence translocase complex, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sterile alpha motif SAM (InterPro:IPR001660), Mitochondrial import inner membrane translocase, subunit Tim17/22 (InterPro:IPR003397); BEST Arabidopsis thaliana protein match is: mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (TAIR:AT3G49560.1); Has 132 Blast hits to 130 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 63; Plants - 54; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G24650.1p  transcript_id AT5G24650.1  protein_id AT5G24650.1p  transcript_id AT5G24650.1  
At5g24655	chr5:008440859	0.0	C/8440859-8441137	AT5G24655.1  CDS  gene_syn LSU4, RESPONSE TO LOW SULFUR 4  gene LSU4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product LSU4 (RESPONSE TO LOW SULFUR 4)  note RESPONSE TO LOW SULFUR 4 (LSU4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: LSU2 (RESPONSE TO LOW SULFUR 2) (TAIR:AT5G24660.1); Has 40 Blast hits to 40 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G24655.1p  transcript_id AT5G24655.1  protein_id AT5G24655.1p  transcript_id AT5G24655.1  
At5g24660	chr5:008443472	0.0	C/8443472-8443756	AT5G24660.1  CDS  gene_syn LSU2, MXC17.2, MXC17_2, RESPONSE TO LOW SULFUR 2  gene LSU2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product LSU2 (RESPONSE TO LOW SULFUR 2)  note RESPONSE TO LOW SULFUR 2 (LSU2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: LSU4 (RESPONSE TO LOW SULFUR 4) (TAIR:AT5G24655.1); Has 41 Blast hits to 41 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G24660.1p  transcript_id AT5G24660.1  protein_id AT5G24660.1p  transcript_id AT5G24660.1  
At5g24670	chr5:008448880	0.0	W/8448880-8448952,8449054-8449105,8449190-8449266,8449348-8449469,8449608-8449690,8449902-8450001,8450186-8450596,8450685-8450788,8450866-8451046	AT5G24670.1  CDS  gene_syn MXC17.5, MXC17_5  go_function catalytic activity|GO:0003824||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function zinc ion binding|GO:0008270||ISS  go_function hydrolase activity|GO:0016787||ISS  product catalytic/ hydrolase/ zinc ion binding  note catalytic/ hydrolase/ zinc ion binding; FUNCTIONS IN: hydrolase activity, catalytic activity, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytidine deaminase-like (InterPro:IPR016193), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125); Has 1963 Blast hits to 1951 proteins in 826 species: Archae - 0; Bacteria - 1316; Metazoa - 92; Fungi - 94; Plants - 19; Viruses - 0; Other Eukaryotes - 442 (source: NCBI BLink).  protein_id AT5G24670.1p  transcript_id AT5G24670.1  protein_id AT5G24670.1p  transcript_id AT5G24670.1  
At5g24680	chr5:008453666	0.0	W/8453666-8453721,8453832-8453964,8454061-8454776,8454880-8454994,8455070-8455165,8455275-8455358	AT5G24680.1  CDS  gene_syn MXC17.7, MXC17_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Peptidase C78, ubiquitin fold modifier-specific peptidase 1 and 2 (InterPro:IPR012462); Has 157 Blast hits to 157 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 45; Plants - 19; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G24680.1p  transcript_id AT5G24680.1  protein_id AT5G24680.1p  transcript_id AT5G24680.1  
At5g24690	chr5:008458169	0.0	C/8458169-8458513,8457460-8457624,8457288-8457380,8457086-8457201,8456886-8456984,8456495-8456800,8456215-8456379,8455783-8456059	AT5G24690.1  CDS  gene_syn MXC17.8, MXC17_8  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_component chloroplast inner membrane|GO:0009706|12766230|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: RER1 (RETICULATA-RELATED 1) (TAIR:AT5G22790.1); Has 251 Blast hits to 242 proteins in 37 species: Archae - 0; Bacteria - 8; Metazoa - 20; Fungi - 4; Plants - 172; Viruses - 3; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT5G24690.1p  transcript_id AT5G24690.1  protein_id AT5G24690.1p  transcript_id AT5G24690.1  
At5g24710	chr5:008467789	0.0	C/8467789-8467920,8467619-8467703,8467498-8467537,8467159-8467407,8466744-8466843,8466557-8466631,8465880-8465978,8465366-8465482,8465169-8465284,8464982-8465081,8463967-8464325,8463531-8463858,8462973-8463184,8462439-8462657,8461949-8462135,8461552-8461787,8461132-8461224,8460948-8461049,8460357-8460717,8460028-8460165,8459148-8459933	AT5G24710.1  CDS  gene_syn MXC17.10, MXC17_10  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); Has 46946 Blast hits to 23834 proteins in 1336 species: Archae - 160; Bacteria - 9572; Metazoa - 15324; Fungi - 6794; Plants - 1938; Viruses - 1106; Other Eukaryotes - 12052 (source: NCBI BLink).  protein_id AT5G24710.1p  transcript_id AT5G24710.1  protein_id AT5G24710.1p  transcript_id AT5G24710.1  
At5g24735	chr5:008468331	0.0	C/8468331-8469262	AT5G24735.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G24735.1  
At5g24740	chr5:008489598	0.0	C/8489598-8489703,8489419-8489496,8489225-8489337,8489047-8489140,8488923-8488966,8488676-8488744,8488312-8488373,8487708-8487915,8487199-8487267,8487022-8487101,8486786-8486885,8485385-8485486,8485033-8485245,8484814-8484947,8484578-8484728,8484278-8484370,8484041-8484142,8483785-8483840,8483595-8483697,8483318-8483500,8483112-8483228,8482713-8482957,8480825-8482377,8479485-8480701,8478791-8478919,8478550-8478705,8477599-8478165,8477440-8477511,8476851-8477342,8476556-8476733,8475754-8476483,8475555-8475671,8475116-8475389,8474617-8474730,8474412-8474495,8473564-8473614,8473279-8473458,8472882-8473201,8472440-8472778,8472280-8472343,8471733-8471879,8471517-8471621,8471310-8471420,8471122-8471226,8470897-8470966,8470073-8470764	AT5G24740.1  CDS  gene_syn T4C12.10  go_process protein localization|GO:0008104||IEA  product unknown protein  note INVOLVED IN: protein localization; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein (InterPro:IPR009543); BEST Arabidopsis thaliana protein match is: phosphoinositide binding (TAIR:AT1G48090.2); Has 1782 Blast hits to 981 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 1018; Fungi - 290; Plants - 104; Viruses - 0; Other Eukaryotes - 370 (source: NCBI BLink).  protein_id AT5G24740.1p  transcript_id AT5G24740.1  protein_id AT5G24740.1p  transcript_id AT5G24740.1  
At5g24750	chr5:008494456	0.0	C/8494456-8494536,8494296-8494367,8494111-8494210,8493876-8494018,8493682-8493752,8493521-8493602,8493339-8493440,8493189-8493244,8492876-8492910,8492269-8492479,8491912-8492121,8491768-8491827,8491615-8491654,8491080-8491304,8490821-8490895	AT5G24750.1  CDS  gene_syn T4C12.20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: UDP-glucose:sterol glucosyltransferase, putative (TAIR:AT1G43620.3); Has 976 Blast hits to 975 proteins in 299 species: Archae - 0; Bacteria - 617; Metazoa - 1; Fungi - 251; Plants - 63; Viruses - 14; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT5G24750.1p  transcript_id AT5G24750.1  protein_id AT5G24750.1p  transcript_id AT5G24750.1  
At5g24760	chr5:008496989	0.0	C/8496989-8497090,8496866-8496903,8496172-8496494,8496005-8496087,8495855-8495930,8495727-8495788,8495501-8495596,8495236-8495397,8495035-8495151	AT5G24760.2  CDS  gene_syn T4C12.30  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product alcohol dehydrogenase, putative  note alcohol dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: ADH1 (ALCOHOL DEHYDROGENASE 1); alcohol dehydrogenase (TAIR:AT1G77120.1); Has 20465 Blast hits to 20453 proteins in 1953 species: Archae - 363; Bacteria - 11290; Metazoa - 1110; Fungi - 1534; Plants - 3012; Viruses - 0; Other Eukaryotes - 3156 (source: NCBI BLink).  protein_id AT5G24760.2p  transcript_id AT5G24760.2  protein_id AT5G24760.2p  transcript_id AT5G24760.2  
At5g24760	chr5:008496989	0.0	C/8496989-8497090,8496866-8496903,8496172-8496494,8496005-8496087,8495855-8495930,8495727-8495788,8495501-8495596,8495236-8495397,8495035-8495151	AT5G24760.3  CDS  gene_syn T4C12.30  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product alcohol dehydrogenase, putative  note alcohol dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, binding, zinc ion binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: ADH1 (ALCOHOL DEHYDROGENASE 1); alcohol dehydrogenase (TAIR:AT1G77120.1); Has 20465 Blast hits to 20453 proteins in 1953 species: Archae - 363; Bacteria - 11290; Metazoa - 1110; Fungi - 1534; Plants - 3012; Viruses - 0; Other Eukaryotes - 3156 (source: NCBI BLink).  protein_id AT5G24760.3p  transcript_id AT5G24760.3  protein_id AT5G24760.3p  transcript_id AT5G24760.3  
At5g24760	chr5:008497194	0.0	C/8497194-8497245,8496989-8497125,8496866-8496903,8496172-8496494,8496005-8496087,8495855-8495930,8495727-8495788,8495501-8495596,8495236-8495397,8495035-8495151	AT5G24760.1  CDS  gene_syn T4C12.30  go_component chloroplast|GO:0009507||IEA  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product alcohol dehydrogenase, putative  note alcohol dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: ADH1 (ALCOHOL DEHYDROGENASE 1); alcohol dehydrogenase (TAIR:AT1G77120.1); Has 21073 Blast hits to 21062 proteins in 1956 species: Archae - 365; Bacteria - 11675; Metazoa - 1131; Fungi - 1562; Plants - 3028; Viruses - 3; Other Eukaryotes - 3309 (source: NCBI BLink).  protein_id AT5G24760.1p  transcript_id AT5G24760.1  protein_id AT5G24760.1p  transcript_id AT5G24760.1  
At5g24770	chr5:008501435	0.0	C/8501435-8501844,8500977-8501193	AT5G24770.2  CDS  gene_syn ATVSP2, T4C12.40, VEGETATIVE STORAGE PROTEIN 2, VSP2  gene VSP2  function Has acid phosphatase activity dependent on the presence of divalent cations (Mg2+, Co2+, Zn2+, Mn2+) and anti-insect activity. Insects fed with the protein show a retarded development. Induced in response to abscisic acid, jasmonic acid, salt, water deficiency and wounding.  go_component vacuole|GO:0005773|15539469|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process defense response to insect|GO:0002213|16258019|IDA  go_process response to oxidative stress|GO:0006979|11941471|IEP  go_process response to wounding|GO:0009611|16258017|IEP  go_process response to wounding|GO:0009611|9747802|IEP  go_process response to insect|GO:0009625|11982938|IEP  go_process response to salt stress|GO:0009651|11351099|IEP  go_process response to jasmonic acid stimulus|GO:0009753|11340179|TAS  go_process senescence|GO:0010149|11941471|IEP  go_process hyperosmotic salinity response|GO:0042538|11351099|IGI  go_process response to copper ion|GO:0046688|11941471|IEP  go_function acid phosphatase activity|GO:0003993|16258019|IDA  go_function acid phosphatase activity|GO:0003993||ISS  product VSP2 (VEGETATIVE STORAGE PROTEIN 2); acid phosphatase  note VEGETATIVE STORAGE PROTEIN 2 (VSP2); FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: in 9 processes; LOCATED IN: cytosolic ribosome, vacuole; EXPRESSED IN: fruit, flower, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519); BEST Arabidopsis thaliana protein match is: VSP1 (VEGETATIVE STORAGE PROTEIN 1); acid phosphatase/ transcription factor binding (TAIR:AT5G24780.2); Has 228 Blast hits to 228 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 228; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G24770.2p  transcript_id AT5G24770.2  protein_id AT5G24770.2p  transcript_id AT5G24770.2  
At5g24770	chr5:008501435	0.0	C/8501435-8501844,8500981-8501193,8500713-8500887	AT5G24770.1  CDS  gene_syn ATVSP2, T4C12.40, VEGETATIVE STORAGE PROTEIN 2, VSP2  gene VSP2  function Has acid phosphatase activity dependent on the presence of divalent cations (Mg2+, Co2+, Zn2+, Mn2+) and anti-insect activity. Insects fed with the protein show a retarded development. Induced in response to abscisic acid, jasmonic acid, salt, water deficiency and wounding.  go_component vacuole|GO:0005773|15539469|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process defense response to insect|GO:0002213|16258019|IDA  go_process response to oxidative stress|GO:0006979|11941471|IEP  go_process response to wounding|GO:0009611|16258017|IEP  go_process response to wounding|GO:0009611|9747802|IEP  go_process response to insect|GO:0009625|11982938|IEP  go_process response to salt stress|GO:0009651|11351099|IEP  go_process response to jasmonic acid stimulus|GO:0009753|11340179|TAS  go_process senescence|GO:0010149|11941471|IEP  go_process hyperosmotic salinity response|GO:0042538|11351099|IGI  go_process response to copper ion|GO:0046688|11941471|IEP  go_function acid phosphatase activity|GO:0003993|16258019|IDA  go_function acid phosphatase activity|GO:0003993||ISS  product VSP2 (VEGETATIVE STORAGE PROTEIN 2); acid phosphatase  note VEGETATIVE STORAGE PROTEIN 2 (VSP2); FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: in 9 processes; LOCATED IN: cytosolic ribosome, vacuole; EXPRESSED IN: fruit, flower, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519), Vegetative storage protein/acid phosphatase (InterPro:IPR014403), Acid phosphatase, plant (InterPro:IPR010028); BEST Arabidopsis thaliana protein match is: VSP1 (VEGETATIVE STORAGE PROTEIN 1); acid phosphatase/ transcription factor binding (TAIR:AT5G24780.1); Has 307 Blast hits to 307 proteins in 47 species: Archae - 0; Bacteria - 54; Metazoa - 0; Fungi - 0; Plants - 238; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT5G24770.1p  transcript_id AT5G24770.1  protein_id AT5G24770.1p  transcript_id AT5G24770.1  
At5g24775	chr5:008503317	0.0	W/8503317-8506432	AT5G24775.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 1.6e-99 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota)  
At5g24780	chr5:008508465	0.0	C/8508465-8508889,8508043-8508255,8507783-8507957	AT5G24780.1  CDS  gene_syn ATVSP1, T4C12.50, VEGETATIVE STORAGE PROTEIN 1, VSP1  gene VSP1  function encodes an acid phosphatase similar to soybean vegetative storage proteins. Gene expression is induced by wounding and jasmonic acid.  go_component vacuole|GO:0005773|15539469|IDA  go_process defense response|GO:0006952|11982938|IEP  go_process response to wounding|GO:0009611|7766883|IEP  go_process response to jasmonic acid stimulus|GO:0009753|11340179|TAS  go_process response to jasmonic acid stimulus|GO:0009753|15860010|IEP  go_process response to jasmonic acid stimulus|GO:0009753|7766883|IEP  go_function acid phosphatase activity|GO:0003993||ISS  go_function transcription factor binding|GO:0008134|11689012|IDA  product VSP1 (VEGETATIVE STORAGE PROTEIN 1); acid phosphatase/ transcription factor binding  note VEGETATIVE STORAGE PROTEIN 1 (VSP1); FUNCTIONS IN: transcription factor binding, acid phosphatase activity; INVOLVED IN: response to jasmonic acid stimulus, response to wounding, defense response; LOCATED IN: vacuole; EXPRESSED IN: fruit, gynoecium, valve; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519), Vegetative storage protein/acid phosphatase (InterPro:IPR014403), Acid phosphatase, plant (InterPro:IPR010028); BEST Arabidopsis thaliana protein match is: VSP2 (VEGETATIVE STORAGE PROTEIN 2); acid phosphatase (TAIR:AT5G24770.1); Has 414 Blast hits to 414 proteins in 87 species: Archae - 0; Bacteria - 128; Metazoa - 0; Fungi - 0; Plants - 238; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT5G24780.1p  transcript_id AT5G24780.1  protein_id AT5G24780.1p  transcript_id AT5G24780.1  
At5g24780	chr5:008508465	0.0	C/8508465-8508889,8508043-8508255,8507938-8507977	AT5G24780.2  CDS  gene_syn ATVSP1, T4C12.50, VEGETATIVE STORAGE PROTEIN 1, VSP1  gene VSP1  function encodes an acid phosphatase similar to soybean vegetative storage proteins. Gene expression is induced by wounding and jasmonic acid.  go_process defense response|GO:0006952|11982938|IEP  go_process response to wounding|GO:0009611|7766883|IEP  go_process response to jasmonic acid stimulus|GO:0009753|11340179|TAS  go_process response to jasmonic acid stimulus|GO:0009753|15860010|IEP  go_process response to jasmonic acid stimulus|GO:0009753|7766883|IEP  go_function acid phosphatase activity|GO:0003993||ISS  go_function transcription factor binding|GO:0008134|11689012|IDA  product VSP1 (VEGETATIVE STORAGE PROTEIN 1); acid phosphatase/ transcription factor binding  note VEGETATIVE STORAGE PROTEIN 1 (VSP1); FUNCTIONS IN: transcription factor binding, acid phosphatase activity; INVOLVED IN: response to jasmonic acid stimulus, response to wounding, defense response; EXPRESSED IN: fruit, gynoecium, valve; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519); BEST Arabidopsis thaliana protein match is: VSP2 (VEGETATIVE STORAGE PROTEIN 2); acid phosphatase (TAIR:AT5G24770.1); Has 249 Blast hits to 249 proteins in 26 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 0; Plants - 231; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G24780.2p  transcript_id AT5G24780.2  protein_id AT5G24780.2p  transcript_id AT5G24780.2  
At5g24790	chr5:008512076	0.0	W/8512076-8512243,8512492-8513064	AT5G24790.1  CDS  gene_syn T4C12.60  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF599 (InterPro:IPR006747); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10580.1); Has 242 Blast hits to 242 proteins in 81 species: Archae - 0; Bacteria - 132; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT5G24790.1p  transcript_id AT5G24790.1  protein_id AT5G24790.1p  transcript_id AT5G24790.1  
At5g24800	chr5:008515259	0.0	W/8515259-8515372,8515478-8515568,8515666-8515837,8515930-8516005,8516084-8516209,8516287-8516541	AT5G24800.1  CDS  gene_syn ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 9, ATBZIP9, BASIC LEUCINE ZIPPER 9, BASIC LEUCINE ZIPPER O2 HOMOLOG 2, BZIP PROTEIN BZO2H2, BZIP9, BZO2H2, F6A4.10, F6A4_10  gene BZIP9  function Encodes bZIP protein BZO2H2.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634|16581911|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function protein heterodimerization activity|GO:0046982|16709202|IPI  product BZIP9 (BASIC LEUCINE ZIPPER 9); DNA binding / protein heterodimerization/ transcription factor  note BASIC LEUCINE ZIPPER 9 (BZIP9); FUNCTIONS IN: transcription factor activity, protein heterodimerization activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: BZO2H1; DNA binding / protein heterodimerization/ sequence-specific DNA binding / transcription factor (TAIR:AT4G02640.2); Has 1656 Blast hits to 1632 proteins in 134 species: Archae - 0; Bacteria - 0; Metazoa - 304; Fungi - 34; Plants - 1248; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT5G24800.1p  transcript_id AT5G24800.1  protein_id AT5G24800.1p  transcript_id AT5G24800.1  
At5g24810	chr5:008522572	0.0	C/8522572-8522616,8522234-8522404,8521914-8522141,8521646-8521732,8521462-8521551,8521224-8521350,8520724-8520824,8520151-8520319,8519908-8520029,8519544-8519672,8519354-8519452,8519223-8519280,8519044-8519119,8518834-8518963,8518591-8518748,8518350-8518422,8518080-8518271,8517867-8517960,8516902-8517782	AT5G24810.1  CDS  gene_syn F6A4.20, F6A4_20  go_component plasma membrane|GO:0005886|17317660|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  product ABC1 family protein  note ABC1 family protein; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Beta-lactamase-type transpeptidase fold (InterPro:IPR012338), Beta-lactamase-related (InterPro:IPR001466), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATATH13; transporter (TAIR:AT5G64940.2); Has 11583 Blast hits to 11540 proteins in 1287 species: Archae - 93; Bacteria - 6015; Metazoa - 395; Fungi - 388; Plants - 356; Viruses - 16; Other Eukaryotes - 4320 (source: NCBI BLink).  protein_id AT5G24810.1p  transcript_id AT5G24810.1  protein_id AT5G24810.1p  transcript_id AT5G24810.1  
At5g24820	chr5:008523406	0.0	W/8523406-8524202,8524871-8525297	AT5G24820.1  CDS  gene_syn F6A4.30, F6A4_30  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT2G35615.1); Has 736 Blast hits to 730 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 34; Plants - 702; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G24820.1p  transcript_id AT5G24820.1  protein_id AT5G24820.1p  transcript_id AT5G24820.1  
At5g24825	chr5:008527469	0.0	W/8527469-8527649	AT5G24825.1  miRNA  gene_syn MICRORNA169B, MIR169B  gene MIR169B  function Encodes a microRNA that targets several HAP2 family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: CAGCCAAGGAUGACUUGCCGG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR169B (MICRORNA169B); miRNA  transcript_id AT5G24825.1  
At5g24830	chr5:008531226	0.0	W/8531226-8531231,8531328-8531452,8531533-8531718,8531802-8533266	AT5G24830.1  CDS  gene_syn F6A4.40, F6A4_40  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G12300.1); Has 22335 Blast hits to 5701 proteins in 178 species: Archae - 6; Bacteria - 14; Metazoa - 418; Fungi - 405; Plants - 20611; Viruses - 0; Other Eukaryotes - 881 (source: NCBI BLink).  protein_id AT5G24830.1p  transcript_id AT5G24830.1  protein_id AT5G24830.1p  transcript_id AT5G24830.1  
At5g24840	chr5:008533897	0.0	C/8533897-8534652	AT5G24840.1  CDS  gene_syn F6A4.50, F6A4_50  go_process tRNA modification|GO:0006400||IEA  go_process methanol oxidation|GO:0015946||IEA  go_process acetate biosynthetic process from carbon monoxide|GO:0019415||IEA  go_function tRNA (guanine-N7-)-methyltransferase activity|GO:0008176||IEA  go_component cellular_component|GO:0005575||ND  product tRNA (guanine-N7-)-methyltransferase  note tRNA (guanine-N7-)-methyltransferase; FUNCTIONS IN: tRNA (guanine-N7-)-methyltransferase activity; INVOLVED IN: acetate biosynthetic process from carbon monoxide, methanol oxidation, tRNA modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA (guanine-N-7) methyltransferase (InterPro:IPR003358); BEST Arabidopsis thaliana protein match is: tRNA (guanine-N7-)-methyltransferase (TAIR:AT5G17660.1); Has 3254 Blast hits to 3250 proteins in 1207 species: Archae - 0; Bacteria - 2194; Metazoa - 104; Fungi - 94; Plants - 68; Viruses - 0; Other Eukaryotes - 794 (source: NCBI BLink).  protein_id AT5G24840.1p  transcript_id AT5G24840.1  protein_id AT5G24840.1p  transcript_id AT5G24840.1  
At5g24850	chr5:008537740	0.0	C/8537740-8538016,8537526-8537665,8537257-8537439,8536963-8537088,8536787-8536861,8536584-8536700,8536454-8536500,8536296-8536372,8536144-8536219,8535861-8536054,8535696-8535745,8535399-8535617	AT5G24850.1  CDS  gene_syn CRY3, F6A4.60, F6A4_60, cryptochrome 3  gene CRY3  function Binds flavin adenine dinucleotide and DNA. It does not have photolyase activity, and it is likely to act as photoreceptor. Closely related to Synechocystis cryptochrome.  go_process DNA repair|GO:0006281||IEA  go_component mitochondrion|GO:0005739|12834405|IDA  go_component chloroplast|GO:0009507|12834405|IDA  go_process DNA repair|GO:0006281||ISS  go_function DNA binding|GO:0003677|12834405|IDA  go_function DNA photolyase activity|GO:0003913|12834405|IDA  go_function DNA photolyase activity|GO:0003913||ISS  go_function FMN binding|GO:0010181|12834405|IDA  product CRY3 (cryptochrome 3); DNA binding / DNA photolyase/ FMN binding  note cryptochrome 3 (CRY3); FUNCTIONS IN: FMN binding, DNA binding, DNA photolyase activity; INVOLVED IN: DNA repair; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cryptochrome, DASH (InterPro:IPR014133), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), Cryptochrome/DNA photolyase, class 1 (InterPro:IPR002081); BEST Arabidopsis thaliana protein match is: PHR2 (photolyase/blue-light receptor 2); DNA photolyase (TAIR:AT2G47590.1); Has 7804 Blast hits to 7768 proteins in 889 species: Archae - 51; Bacteria - 1836; Metazoa - 346; Fungi - 100; Plants - 529; Viruses - 5; Other Eukaryotes - 4937 (source: NCBI BLink).  protein_id AT5G24850.1p  transcript_id AT5G24850.1  protein_id AT5G24850.1p  transcript_id AT5G24850.1  
At5g24860	chr5:008541822	0.0	W/8541822-8542154	AT5G24860.1  CDS  gene_syn F6A4.70, F6A4_70, FLOWERING PROMOTING FACTOR 1, FPF1  gene FPF1  function encodes a small protein of 12.6 kDa that regulates flowering and is involved in gibberellin signalling pathway. It is expressed in apical meristems immediately after the photoperiodic induction of flowering. Genetic interactions with flowering time and floral organ identity genes suggest that this gene may be involved in modulating the competence to flower. There are two other genes similar to FPF1, FLP1 (At4g31380) and FLP2 (no locus name yet, on BAC F8F16 on chr 4). This is so far a plant-specific gene and is only found in long-day mustard, arabidopsis, and rice.  go_component cellular_component|GO:0005575||ND  go_process response to gibberellin stimulus|GO:0009739|9286110|IGI  go_process positive regulation of flower development|GO:0009911|9286110|IMP  go_function molecular_function|GO:0003674||ND  product FPF1 (FLOWERING PROMOTING FACTOR 1)  note FLOWERING PROMOTING FACTOR 1 (FPF1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: positive regulation of flower development, response to gibberellin stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10625.1); Has 61 Blast hits to 61 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G24860.1p  transcript_id AT5G24860.1  protein_id AT5G24860.1p  transcript_id AT5G24860.1  
At5g24870	chr5:008545820	0.0	C/8545820-8546923,8545684-8545734,8545490-8545591,8545244-8545402,8545008-8545154	AT5G24870.1  CDS  gene_syn F6A4.80, F6A4_80  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G10650.2); Has 11110 Blast hits to 7088 proteins in 293 species: Archae - 2; Bacteria - 535; Metazoa - 3276; Fungi - 754; Plants - 2441; Viruses - 55; Other Eukaryotes - 4047 (source: NCBI BLink).  protein_id AT5G24870.1p  transcript_id AT5G24870.1  protein_id AT5G24870.1p  transcript_id AT5G24870.1  
At5g24870	chr5:008545820	0.0	C/8545820-8546923,8545684-8545734,8545490-8545591,8545244-8545402,8545008-8545154	AT5G24870.2  CDS  gene_syn F6A4.80, F6A4_80  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G10650.2); Has 11110 Blast hits to 7088 proteins in 293 species: Archae - 2; Bacteria - 535; Metazoa - 3276; Fungi - 754; Plants - 2441; Viruses - 55; Other Eukaryotes - 4047 (source: NCBI BLink).  protein_id AT5G24870.2p  transcript_id AT5G24870.2  protein_id AT5G24870.2p  transcript_id AT5G24870.2  
At5g24879	chr5:008552491	0.0	C/8552491-8552604	AT5G24879.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G24879.1p  transcript_id AT5G24879.1  protein_id AT5G24879.1p  transcript_id AT5G24879.1  
At5g24880	chr5:008552743	0.0	W/8552743-8554074	AT5G24880.1  CDS  gene_syn F6A4.90, F6A4_90  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: calmodulin-binding protein-related (TAIR:AT5G10660.1); Has 195834 Blast hits to 92446 proteins in 2480 species: Archae - 1007; Bacteria - 19200; Metazoa - 85171; Fungi - 18359; Plants - 7291; Viruses - 1072; Other Eukaryotes - 63734 (source: NCBI BLink).  protein_id AT5G24880.1p  transcript_id AT5G24880.1  protein_id AT5G24880.1p  transcript_id AT5G24880.1  
At5g24890	chr5:008558850	0.0	C/8558850-8559172,8558357-8558756	AT5G24890.1  CDS  gene_syn F6A4.100, F6A4_100  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24550.1); Has 719 Blast hits to 663 proteins in 155 species: Archae - 0; Bacteria - 8; Metazoa - 291; Fungi - 108; Plants - 144; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).  protein_id AT5G24890.1p  transcript_id AT5G24890.1  protein_id AT5G24890.1p  transcript_id AT5G24890.1  
At5g24900	chr5:008566480	0.0	C/8566480-8566771,8565244-8565470,8564889-8565139,8564417-8564804,8563853-8564272	AT5G24900.1  CDS  gene_syn CYP714A2, F6A4.110, F6A4_110  gene CYP714A2  function member of CYP714A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process biological_process|GO:0008150||ND  go_function oxygen binding|GO:0019825||ISS  product CYP714A2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP714A2; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP714A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT5G24910.1); Has 23093 Blast hits to 23026 proteins in 1230 species: Archae - 42; Bacteria - 2666; Metazoa - 10042; Fungi - 4140; Plants - 5000; Viruses - 6; Other Eukaryotes - 1197 (source: NCBI BLink).  protein_id AT5G24900.1p  transcript_id AT5G24900.1  protein_id AT5G24900.1p  transcript_id AT5G24900.1  
At5g24910	chr5:008569957	0.0	C/8569957-8570260,8568709-8569186,8568231-8568621,8567674-8568099	AT5G24910.1  CDS  gene_syn CYP714A1, F6A4.120, F6A4_120  gene CYP714A1  function member of CYP714A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP714A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP714A1; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP714A2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT5G24900.1); Has 23679 Blast hits to 23614 proteins in 1252 species: Archae - 51; Bacteria - 3183; Metazoa - 10044; Fungi - 4043; Plants - 4951; Viruses - 6; Other Eukaryotes - 1401 (source: NCBI BLink).  protein_id AT5G24910.1p  transcript_id AT5G24910.1  protein_id AT5G24910.1p  transcript_id AT5G24910.1  
At5g24915	chr5:008571956	0.0	W/8571956-8577856	AT5G24915.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 3.1e-38 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At5g24920	chr5:008584665	0.0	W/8584665-8585060	AT5G24920.1  CDS  gene_syn Arabidopsis thaliana GLUTAMINE DUMPER 5, AtGDU5, F6A4.130, F6A4_130  gene AtGDU5  go_component integral to membrane|GO:0016021|15208395|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product AtGDU5 (Arabidopsis thaliana GLUTAMINE DUMPER 5)  note Arabidopsis thaliana GLUTAMINE DUMPER 5 (AtGDU5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; BEST Arabidopsis thaliana protein match is: GDU1 (GLUTAMINE DUMPER 1) (TAIR:AT4G31730.1); Has 67 Blast hits to 67 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G24920.1p  transcript_id AT5G24920.1  protein_id AT5G24920.1p  transcript_id AT5G24920.1  
At5g24930	chr5:008589325	0.0	W/8589325-8590200,8590605-8590949	AT5G24930.1  CDS  gene_syn F6A4.140, F6A4_140  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (B-box type) family protein  note zinc finger (B-box type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: COL3 (CONSTANS-LIKE 3); protein binding / transcription factor/ zinc ion binding (TAIR:AT2G24790.1); Has 1806 Blast hits to 1426 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 1663; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).  protein_id AT5G24930.1p  transcript_id AT5G24930.1  protein_id AT5G24930.1p  transcript_id AT5G24930.1  
At5g24940	chr5:008593522	0.0	C/8593522-8593601,8593125-8593252,8592866-8592964,8592616-8592774,8592446-8592532,8592280-8592371,8592128-8592202,8591407-8592030	AT5G24940.1  CDS  gene_syn F6A4.150, F6A4_150  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C-related / PP2C-related (TAIR:AT5G10740.1); Has 6333 Blast hits to 5976 proteins in 644 species: Archae - 14; Bacteria - 1119; Metazoa - 1839; Fungi - 645; Plants - 1383; Viruses - 13; Other Eukaryotes - 1320 (source: NCBI BLink).  protein_id AT5G24940.1p  transcript_id AT5G24940.1  protein_id AT5G24940.1p  transcript_id AT5G24940.1  
At5g24950	chr5:008597378	0.0	C/8597378-8597761,8595956-8596450,8595596-8595880,8595209-8595535	AT5G24950.1  CDS  gene_syn CYP71A15, F6A4.160, F6A4_160  gene CYP71A15  function putative cytochrome P450  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process biological_process|GO:0008150||ND  go_function oxygen binding|GO:0019825||ISS  product CYP71A15; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71A15; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, cultured cell; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP71A14; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT5G24960.1); Has 23261 Blast hits to 23135 proteins in 1229 species: Archae - 26; Bacteria - 2214; Metazoa - 10104; Fungi - 4290; Plants - 5753; Viruses - 3; Other Eukaryotes - 871 (source: NCBI BLink).  protein_id AT5G24950.1p  transcript_id AT5G24950.1  protein_id AT5G24950.1p  transcript_id AT5G24950.1  
At5g24960	chr5:008602808	0.0	C/8602808-8603194,8600793-8601287,8600413-8600697,8599988-8600314	AT5G24960.1  CDS  gene_syn CYP71A14, F6A4.170, F6A4_170  gene CYP71A14  function putative cytochrome P450  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71A14; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71A14; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP71A15; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT5G24950.1); Has 23890 Blast hits to 23743 proteins in 1250 species: Archae - 21; Bacteria - 2524; Metazoa - 10180; Fungi - 4435; Plants - 5784; Viruses - 3; Other Eukaryotes - 943 (source: NCBI BLink).  protein_id AT5G24960.1p  transcript_id AT5G24960.1  protein_id AT5G24960.1p  transcript_id AT5G24960.1  
At5g24970	chr5:008608606	0.0	C/8608606-8608663,8608126-8608237,8607780-8608026,8607605-8607646,8607435-8607497,8607212-8607347,8606924-8607081,8606754-8606838,8606475-8606674,8606172-8606333,8605847-8605996,8605000-8605260,8604668-8604922,8604358-8604588	AT5G24970.1  CDS  gene_syn F6A4.180, F6A4_180  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  product ABC1 family protein  note ABC1 family protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase, core (InterPro:IPR000719), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ABC1 family protein (TAIR:AT1G79600.1); Has 7448 Blast hits to 7430 proteins in 1103 species: Archae - 69; Bacteria - 2644; Metazoa - 345; Fungi - 303; Plants - 352; Viruses - 14; Other Eukaryotes - 3721 (source: NCBI BLink).  protein_id AT5G24970.1p  transcript_id AT5G24970.1  protein_id AT5G24970.1p  transcript_id AT5G24970.1  
At5g24980	chr5:008609146	0.0	W/8609146-8609214,8609313-8609372	AT5G24980.1  CDS  gene_syn F6A4.190, F6A4_190  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10745.1); Has 23 Blast hits to 23 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G24980.1p  transcript_id AT5G24980.1  protein_id AT5G24980.1p  transcript_id AT5G24980.1  
At5g24990	chr5:008610591	0.0	W/8610591-8611475	AT5G24990.1  CDS  gene_syn F6A4.200, F6A4_200  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25010.1); Has 170 Blast hits to 169 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT5G24990.1p  transcript_id AT5G24990.1  protein_id AT5G24990.1p  transcript_id AT5G24990.1  
At5g25000	chr5:008613966	0.0	C/8613966-8614331	AT5G25000.1  CDS  gene_syn T11H3.10, T11H3_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G25000.1p  transcript_id AT5G25000.1  protein_id AT5G25000.1p  transcript_id AT5G25000.1  
At5g25010	chr5:008616009	0.0	W/8616009-8616869	AT5G25010.1  CDS  gene_syn T11H3.20, T11H3_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24990.1); Has 176 Blast hits to 175 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 166; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT5G25010.1p  transcript_id AT5G25010.1  protein_id AT5G25010.1p  transcript_id AT5G25010.1  
At5g25020	chr5:008618567	0.0	W/8618567-8618971,8619061-8619465	AT5G25020.1  CDS  gene_syn T11H3.30, T11H3_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24990.1); Has 142 Blast hits to 142 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT5G25020.1p  transcript_id AT5G25020.1  protein_id AT5G25020.1p  transcript_id AT5G25020.1  
At5g25030	chr5:008620841	0.0	C/8620841-8620991,8620572-8620728,8620083-8620356	AT5G25030.1  CDS  gene_syn T11H3.40, T11H3_40  go_component cytoplasm|GO:0005737||IEA  go_process translation|GO:0006412||IEA  go_process phenylalanyl-tRNA aminoacylation|GO:0006432||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function phenylalanine-tRNA ligase activity|GO:0004826||IEA  go_function ATP binding|GO:0005524||IEA  product ATP binding / nucleotide binding / phenylalanine-tRNA ligase  note ATP binding / nucleotide binding / phenylalanine-tRNA ligase; FUNCTIONS IN: phenylalanine-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: phenylalanyl-tRNA aminoacylation, translation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Phenylalanyl-tRNA synthetase, class IIc, conserved region (InterPro:IPR002319); BEST Arabidopsis thaliana protein match is: ATP binding / nucleotide binding / phenylalanine-tRNA ligase (TAIR:AT5G56060.1); Has 168 Blast hits to 165 proteins in 64 species: Archae - 0; Bacteria - 2; Metazoa - 40; Fungi - 35; Plants - 69; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT5G25030.1p  transcript_id AT5G25030.1  protein_id AT5G25030.1p  transcript_id AT5G25030.1  
At5g25040	chr5:008622185	0.0	W/8622185-8622551,8622626-8622885,8622962-8623057,8623135-8623296,8623372-8623755,8623853-8623888	AT5G25040.1  CDS  gene_syn T11H3.50, T11H3_50  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product transporter  note transporter; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Biopterin transport-related protein BT1 (InterPro:IPR004324), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: integral membrane transporter family protein (TAIR:AT5G25050.1); Has 481 Blast hits to 479 proteins in 108 species: Archae - 1; Bacteria - 105; Metazoa - 0; Fungi - 6; Plants - 128; Viruses - 0; Other Eukaryotes - 241 (source: NCBI BLink).  protein_id AT5G25040.1p  transcript_id AT5G25040.1  protein_id AT5G25040.1p  transcript_id AT5G25040.1  
At5g25045	chr5:008624714	0.0	C/8624714-8629137	AT5G25045.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.9e-186 P-value blast match to GB:AAB82754 retrofit (TY1_Copia-element) (Oryza longistaminata)  
At5g25050	chr5:008632022	0.0	W/8632022-8632385,8632461-8632720,8632804-8632899,8632965-8633135,8633220-8633828	AT5G25050.1  CDS  gene_syn T11H3.60, T11H3_60  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product integral membrane transporter family protein  note integral membrane transporter family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily, general substrate transporter (InterPro:IPR016196), Biopterin transport-related protein BT1 (InterPro:IPR004324); BEST Arabidopsis thaliana protein match is: transporter (TAIR:AT5G25040.1); Has 536 Blast hits to 533 proteins in 110 species: Archae - 0; Bacteria - 109; Metazoa - 2; Fungi - 2; Plants - 127; Viruses - 0; Other Eukaryotes - 296 (source: NCBI BLink).  protein_id AT5G25050.1p  transcript_id AT5G25050.1  protein_id AT5G25050.1p  transcript_id AT5G25050.1  
At5g25060	chr5:008639910	0.0	C/8639910-8639984,8639663-8639795,8639442-8639487,8639125-8639185,8638889-8639023,8638652-8638768,8638395-8638560,8637934-8638046,8637677-8637751,8637059-8637280,8636924-8636982,8636736-8636820,8636493-8636630,8636124-8636348,8635303-8636039,8634670-8634833,8634219-8634508	AT5G25060.1  CDS  gene_syn T11H3.70, T11H3_70  go_process RNA processing|GO:0006396||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA processing; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Regulation of nuclear pre-mRNA protein (InterPro:IPR006569), mRNA splicing factor, Cwf21 (InterPro:IPR013170), ENTH/VHS (InterPro:IPR008942), SWAP/Surp (InterPro:IPR000061), DNA-binding SAP (InterPro:IPR003034), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT5G10800.1); Has 20992 Blast hits to 12473 proteins in 454 species: Archae - 5; Bacteria - 476; Metazoa - 11422; Fungi - 2912; Plants - 1731; Viruses - 39; Other Eukaryotes - 4407 (source: NCBI BLink).  protein_id AT5G25060.1p  transcript_id AT5G25060.1  protein_id AT5G25060.1p  transcript_id AT5G25060.1  
At5g25070	chr5:008641261	0.0	C/8641261-8643471	AT5G25070.1  CDS  gene_syn T11H3.80, T11H3_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 81684 Blast hits to 44791 proteins in 1880 species: Archae - 1252; Bacteria - 11295; Metazoa - 39436; Fungi - 6166; Plants - 3117; Viruses - 367; Other Eukaryotes - 20051 (source: NCBI BLink).  protein_id AT5G25070.1p  transcript_id AT5G25070.1  protein_id AT5G25070.1p  transcript_id AT5G25070.1  
At5g25080	chr5:008643782	0.0	W/8643782-8644004,8644097-8644152,8644251-8644305,8645900-8645980,8646068-8646306	AT5G25080.1  CDS  gene_syn T11H3.90, T11H3_90  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sas10/Utp3/C1D (InterPro:IPR007146), Exosome-associated factor Rrp47/DNA strand repair C1D (InterPro:IPR011082); Has 137 Blast hits to 137 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 76; Fungi - 42; Plants - 16; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G25080.1p  transcript_id AT5G25080.1  protein_id AT5G25080.1p  transcript_id AT5G25080.1  
At5g25090	chr5:008647575	0.0	C/8647575-8647755,8647117-8647496	AT5G25090.1  CDS  gene_syn T11H3.100, T11H3_100  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component anchored to plasma membrane|GO:0046658|12805588|IDA  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function copper ion binding|GO:0005507||ISS  product plastocyanin-like domain-containing protein  note plastocyanin-like domain-containing protein; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: plastocyanin-like domain-containing protein (TAIR:AT2G25060.1); Has 775 Blast hits to 766 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 775; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G25090.1p  transcript_id AT5G25090.1  protein_id AT5G25090.1p  transcript_id AT5G25090.1  
At5g25100	chr5:008650896	0.0	C/8650896-8651015,8650443-8650607,8650258-8650367,8650059-8650176,8649869-8649981,8649639-8649789,8648374-8649531	AT5G25100.1  CDS  gene_syn T11H3.110, T11H3_110  go_component plasma membrane|GO:0005886|17317660|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component integral to membrane|GO:0016021||ISS  product endomembrane protein 70, putative  note endomembrane protein 70, putative; LOCATED IN: integral to membrane, Golgi apparatus, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: endomembrane protein 70, putative (TAIR:AT5G10840.1); Has 1029 Blast hits to 1012 proteins in 169 species: Archae - 0; Bacteria - 14; Metazoa - 445; Fungi - 142; Plants - 236; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).  protein_id AT5G25100.1p  transcript_id AT5G25100.1  protein_id AT5G25100.1p  transcript_id AT5G25100.1  
At5g25102	chr5:008652879	0.0	W/8652879-8653046	AT5G25102.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G25102.1p  transcript_id AT5G25102.1  protein_id AT5G25102.1p  transcript_id AT5G25102.1  
At5g25110	chr5:008657740	0.0	C/8657740-8659206	AT5G25110.1  CDS  gene_syn CBL-INTERACTING PROTEIN KINASE 25, CIPK25, SNF1-RELATED PROTEIN KINASE 3.25, SnRK3.25, T11H3.120, T11H3_120  gene CIPK25  function member of AtCIPKs  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product CIPK25 (CBL-INTERACTING PROTEIN KINASE 25); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note CBL-INTERACTING PROTEIN KINASE 25 (CIPK25); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: signal transduction, protein amino acid phosphorylation; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CIPK5 (CBL-INTERACTING PROTEIN KINASE 5); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G10930.1); Has 97594 Blast hits to 95763 proteins in 3308 species: Archae - 87; Bacteria - 8717; Metazoa - 42396; Fungi - 8747; Plants - 18563; Viruses - 477; Other Eukaryotes - 18607 (source: NCBI BLink).  protein_id AT5G25110.1p  transcript_id AT5G25110.1  protein_id AT5G25110.1p  transcript_id AT5G25110.1  
At5g25120	chr5:008662851	0.0	W/8662851-8663726,8663818-8664432	AT5G25120.1  CDS  gene_syn CYP71B11, T11H3.130, T11H3_130  gene CYP71B11  function putative cytochrome P450  go_component plasma membrane|GO:0005886|17317660|IDA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71B11; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71B11; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: plasma membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP71B12; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT5G25130.1); Has 23677 Blast hits to 23508 proteins in 1259 species: Archae - 21; Bacteria - 1961; Metazoa - 10516; Fungi - 4385; Plants - 5893; Viruses - 3; Other Eukaryotes - 898 (source: NCBI BLink).  protein_id AT5G25120.1p  transcript_id AT5G25120.1  protein_id AT5G25120.1p  transcript_id AT5G25120.1  
At5g25130	chr5:008668521	0.0	W/8668521-8669396,8669490-8670104	AT5G25130.1  CDS  gene_syn CYP71B12, F21J6.2  gene CYP71B12  function putative cytochrome P450  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71B12; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71B12; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, LP.10 ten leaves visible, LP.02 two leaves visible; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP71B11; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT5G25120.1); Has 23494 Blast hits to 23335 proteins in 1243 species: Archae - 23; Bacteria - 1960; Metazoa - 10481; Fungi - 4337; Plants - 5803; Viruses - 3; Other Eukaryotes - 887 (source: NCBI BLink).  protein_id AT5G25130.1p  transcript_id AT5G25130.1  protein_id AT5G25130.1p  transcript_id AT5G25130.1  
At5g25140	chr5:008672989	0.0	W/8672989-8673864,8673943-8674557	AT5G25140.1  CDS  gene_syn CYP71B13, F21J6.4  gene CYP71B13  function putative cytochrome P450  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71B13; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71B13; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP71B14; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT5G25180.1); Has 23788 Blast hits to 23584 proteins in 1271 species: Archae - 42; Bacteria - 1964; Metazoa - 10551; Fungi - 4466; Plants - 5849; Viruses - 3; Other Eukaryotes - 913 (source: NCBI BLink).  protein_id AT5G25140.1p  transcript_id AT5G25140.1  protein_id AT5G25140.1p  transcript_id AT5G25140.1  
At5g25150	chr5:008677117	0.0	W/8677117-8677292,8677606-8677687,8677773-8677851,8677968-8678065,8678164-8678220,8678337-8678424,8678518-8678627,8678755-8678862,8678941-8679092,8679275-8679385,8679460-8679529,8679619-8679655,8679804-8679959,8680049-8680125,8680222-8680338,8680756-8681021,8681486-8681581,8681670-8681742,8682002-8682058	AT5G25150.1  CDS  gene_syn F21J6.5, TAF5, TBP-ASSOCIATED FACTOR 5  gene TAF5  function Encodes a putative TATA-binding-protein associated factor TAF5. TAFs are subunits of the general transcription factor IID (TFIID).  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription regulator activity|GO:0030528||IEA  go_function nucleotide binding|GO:0000166||ISS  product TAF5 (TBP-ASSOCIATED FACTOR 5); nucleotide binding / transcription regulator  note TBP-ASSOCIATED FACTOR 5 (TAF5); FUNCTIONS IN: transcription regulator activity, nucleotide binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: inflorescence, root, guard cell, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 associated region in TFIID subunit (InterPro:IPR007582); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT4G02730.1); Has 84378 Blast hits to 31279 proteins in 748 species: Archae - 50; Bacteria - 7314; Metazoa - 40069; Fungi - 16593; Plants - 7889; Viruses - 3; Other Eukaryotes - 12460 (source: NCBI BLink).  protein_id AT5G25150.1p  transcript_id AT5G25150.1  protein_id AT5G25150.1p  transcript_id AT5G25150.1  
At5g25160	chr5:008687524	0.0	W/8687524-8688231	AT5G25160.1  CDS  gene_syn F21J6.6, F21J6_6, ZFP3, ZINC FINGER PROTEIN 3  gene ZFP3  function Encodes a zinc finger protein containing only a single zinc finger.  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product ZFP3 (ZINC FINGER PROTEIN 3); nucleic acid binding / transcription factor/ zinc ion binding  note ZINC FINGER PROTEIN 3 (ZFP3); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: shoot apex, hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT5G10970.1); Has 353 Blast hits to 351 proteins in 20 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 350; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G25160.1p  transcript_id AT5G25160.1  protein_id AT5G25160.1p  transcript_id AT5G25160.1  
At5g25170	chr5:008693257	0.0	W/8693257-8693398,8693839-8694126,8694212-8694438	AT5G25170.1  CDS  gene_syn F21J6.101, F21J6_101  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25190.1); Has 565 Blast hits to 565 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 188; Fungi - 60; Plants - 184; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).  protein_id AT5G25170.1p  transcript_id AT5G25170.1  protein_id AT5G25170.1p  transcript_id AT5G25170.1  
At5g25180	chr5:008695346	0.0	C/8695346-8696221,8694630-8695244	AT5G25180.1  CDS  gene_syn CYP71B14, F21J6.102, F21J6_102  gene CYP71B14  function putative cytochrome P450  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function oxygen binding|GO:0019825||ISS  product CYP71B14; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71B14; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP71B13; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT5G25140.1); Has 23625 Blast hits to 23458 proteins in 1258 species: Archae - 21; Bacteria - 1930; Metazoa - 10492; Fungi - 4505; Plants - 5801; Viruses - 3; Other Eukaryotes - 873 (source: NCBI BLink).  protein_id AT5G25180.1p  transcript_id AT5G25180.1  protein_id AT5G25180.1p  transcript_id AT5G25180.1  
At5g25190	chr5:008707573	0.0	C/8707573-8707655,8707007-8707469	AT5G25190.1  CDS  gene_syn F21J6.103, F21J6_103  function encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9687012|TAS  go_function transcription factor activity|GO:0003700||ISS  product ethylene-responsive element-binding protein, putative  note ethylene-responsive element-binding protein, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: ethylene mediated signaling pathway, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: SHN1 (SHINE 1); DNA binding / sequence-specific DNA binding / transcription factor (TAIR:AT1G15360.1); Has 3606 Blast hits to 3597 proteins in 198 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 3599; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G25190.1p  transcript_id AT5G25190.1  protein_id AT5G25190.1p  transcript_id AT5G25190.1  
At5g25200	chr5:008716766	0.0	C/8716766-8717869	AT5G25200.1  CDS  gene_syn F21J6.104, F21J6_104  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18636.1); Has 145 Blast hits to 145 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G25200.1p  transcript_id AT5G25200.1  protein_id AT5G25200.1p  transcript_id AT5G25200.1  
At5g25205	chr5:008718571	0.0	C/8718571-8723552	AT5G25205.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.0e-33 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)  
At5g25210	chr5:008724056	0.0	W/8724056-8724355,8725135-8725203,8725307-8725465	AT5G25210.1  CDS  gene_syn F21J6.105, F21J6_105  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32030.1); Has 20 Blast hits to 20 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G25210.1p  transcript_id AT5G25210.1  protein_id AT5G25210.1p  transcript_id AT5G25210.1  
At5g25220	chr5:008736208	0.0	W/8736208-8736888,8737164-8737284,8737373-8737557,8737635-8737766,8737845-8737981,8738076-8738115	AT5G25220.1  CDS  gene_syn F21J6.18, F21J6_18, KNAT3, KNAT3 HOMEOBOX PROTEIN, KNOTTED1-LIKE HOMEOBOX GENE 3  gene KNAT3  function A member of class II knotted1-like homeobox gene family (together with KNAT4 and KNAT5). Expressed in: hypocotyl-root boundary, anther-filament junction in flowers, ovule-funiculus and peduncle-silique boundaries, petioles and root. Light-regulated expression with differential response to red/far-red light. KNAT3 promoter activity showed cell-type specific pattern along longitudinal root axis, restricted mainly to the differentiation zone of the root, namely in the cortex and pericycle. Not detected in lateral root primordia  go_component nucleus|GO:0005634|16463096|IDA  go_component cytosol|GO:0005829|16463096|IDA  go_process response to light stimulus|GO:0009416|9161040|IEP  go_process detection of cytokinin stimulus|GO:0009722|16463096|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|8980519|ISS  product KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3); transcription activator/ transcription factor  note KNOTTED1-LIKE HOMEOBOX GENE 3 (KNAT3); FUNCTIONS IN: transcription factor activity, transcription activator activity; INVOLVED IN: response to light stimulus, detection of cytokinin stimulus; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 37 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ELK (InterPro:IPR005539), Homeobox (InterPro:IPR001356), KNOX1 (InterPro:IPR005540), KNOX2 (InterPro:IPR005541), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE 4); transcription activator/ transcription factor (TAIR:AT5G11060.1); Has 5188 Blast hits to 5157 proteins in 270 species: Archae - 0; Bacteria - 2; Metazoa - 1871; Fungi - 222; Plants - 2949; Viruses - 4; Other Eukaryotes - 140 (source: NCBI BLink).  protein_id AT5G25220.1p  transcript_id AT5G25220.1  protein_id AT5G25220.1p  transcript_id AT5G25220.1  
At5g25220	chr5:008736208	0.0	W/8736208-8736888,8737164-8737284,8737373-8737557,8737635-8737766,8737845-8737981,8738084-8738087	AT5G25220.2  CDS  gene_syn F21J6.18, F21J6_18, KNAT3, KNAT3 HOMEOBOX PROTEIN, KNOTTED1-LIKE HOMEOBOX GENE 3  gene KNAT3  function A member of class II knotted1-like homeobox gene family (together with KNAT4 and KNAT5). Expressed in: hypocotyl-root boundary, anther-filament junction in flowers, ovule-funiculus and peduncle-silique boundaries, petioles and root. Light-regulated expression with differential response to red/far-red light. KNAT3 promoter activity showed cell-type specific pattern along longitudinal root axis, restricted mainly to the differentiation zone of the root, namely in the cortex and pericycle. Not detected in lateral root primordia  go_component nucleus|GO:0005634|16463096|IDA  go_component cytosol|GO:0005829|16463096|IDA  go_process response to light stimulus|GO:0009416|9161040|IEP  go_process detection of cytokinin stimulus|GO:0009722|16463096|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|8980519|ISS  product KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3); transcription activator/ transcription factor  note KNOTTED1-LIKE HOMEOBOX GENE 3 (KNAT3); FUNCTIONS IN: transcription factor activity, transcription activator activity; INVOLVED IN: response to light stimulus, detection of cytokinin stimulus; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 37 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ELK (InterPro:IPR005539), KNOX1 (InterPro:IPR005540), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), KNOX2 (InterPro:IPR005541), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE 4); transcription activator/ transcription factor (TAIR:AT5G11060.1); Has 5095 Blast hits to 5064 proteins in 268 species: Archae - 0; Bacteria - 2; Metazoa - 1788; Fungi - 222; Plants - 2945; Viruses - 4; Other Eukaryotes - 134 (source: NCBI BLink).  protein_id AT5G25220.2p  transcript_id AT5G25220.2  protein_id AT5G25220.2p  transcript_id AT5G25220.2  
At5g25230	chr5:008739709	0.0	W/8739709-8740407,8740479-8740547,8740623-8741816,8741907-8742005,8742102-8742260,8742352-8742437,8742523-8742721,8742806-8742916,8743010-8743216,8743496-8743594	AT5G25230.1  CDS  gene_syn F21J6.106, F21J6_106  go_component nucleolus|GO:0005730|15496452|IDA  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_function translation elongation factor activity|GO:0003746||ISS  go_function translation factor activity, nucleic acid binding|GO:0008135||ISS  product elongation factor Tu family protein  note elongation factor Tu family protein; FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, translation elongation factor activity, GTPase activity; LOCATED IN: nucleolus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EFG/EF2, domain IV (InterPro:IPR005517), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721), Elongation factor G, III and V (InterPro:IPR009022), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: MEE5 (MATERNAL EFFECT EMBRYO ARREST 5); GTP binding / GTPase/ translation elongation factor/ translation factor, nucleic acid binding (TAIR:AT1G06220.2); Has 40452 Blast hits to 37670 proteins in 3008 species: Archae - 793; Bacteria - 21708; Metazoa - 1852; Fungi - 1071; Plants - 638; Viruses - 0; Other Eukaryotes - 14390 (source: NCBI BLink).  protein_id AT5G25230.1p  transcript_id AT5G25230.1  protein_id AT5G25230.1p  transcript_id AT5G25230.1  
At5g25240	chr5:008746779	0.0	C/8746779-8747174	AT5G25240.1  CDS  gene_syn F21J6.107, F21J6_107  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: NHL repeat-containing protein (TAIR:AT5G14890.1); Has 23 Blast hits to 23 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G25240.1p  transcript_id AT5G25240.1  protein_id AT5G25240.1p  transcript_id AT5G25240.1  
At5g25250	chr5:008749774	0.0	W/8749774-8750134,8750379-8751430	AT5G25250.1  CDS  gene_syn F21J6.108, F21J6_108  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25260.1); Has 4072 Blast hits to 3210 proteins in 656 species: Archae - 10; Bacteria - 1411; Metazoa - 994; Fungi - 195; Plants - 102; Viruses - 10; Other Eukaryotes - 1350 (source: NCBI BLink).  protein_id AT5G25250.1p  transcript_id AT5G25250.1  protein_id AT5G25250.1p  transcript_id AT5G25250.1  
At5g25260	chr5:008752751	0.0	W/8752751-8753111,8753252-8754282	AT5G25260.1  CDS  gene_syn F21J6.109, F21J6_109  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25250.1); Has 4214 Blast hits to 3442 proteins in 652 species: Archae - 14; Bacteria - 1365; Metazoa - 1204; Fungi - 198; Plants - 130; Viruses - 8; Other Eukaryotes - 1295 (source: NCBI BLink).  protein_id AT5G25260.1p  transcript_id AT5G25260.1  protein_id AT5G25260.1p  transcript_id AT5G25260.1  
At5g25265	chr5:008756439	0.0	C/8756439-8756855,8756299-8756366,8756007-8756208,8755830-8755927,8755674-8755743,8755251-8755322,8754993-8755106,8754794-8754853	AT5G25265.1  CDS  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: cultured cell, leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25260.1); Has 112 Blast hits to 97 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT5G25265.1p  transcript_id AT5G25265.1  protein_id AT5G25265.1p  transcript_id AT5G25265.1  
At5g25270	chr5:008761883	0.0	C/8761883-8762002,8761514-8761631,8761257-8761328,8760994-8761109,8760792-8760863,8760589-8760717,8760436-8760505,8760191-8760354,8759670-8759834,8759467-8759532,8759254-8759377,8758825-8759112,8758261-8758598,8757883-8757960,8757577-8757633	AT5G25270.1  CDS  gene_syn F21J6.3  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: ubiquitin family protein (TAIR:AT5G42220.1); Has 1533 Blast hits to 627 proteins in 167 species: Archae - 0; Bacteria - 307; Metazoa - 363; Fungi - 153; Plants - 33; Viruses - 41; Other Eukaryotes - 636 (source: NCBI BLink).  protein_id AT5G25270.1p  transcript_id AT5G25270.1  protein_id AT5G25270.1p  transcript_id AT5G25270.1  
At5g25280	chr5:008773882	0.0	W/8773882-8774544	AT5G25280.1  CDS  gene_syn F18G18.20, F18G18_20  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product serine-rich protein-related  note serine-rich protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: serine-rich protein-related (TAIR:AT5G11090.1); Has 1714 Blast hits to 295 proteins in 53 species: Archae - 0; Bacteria - 6; Metazoa - 724; Fungi - 65; Plants - 92; Viruses - 0; Other Eukaryotes - 827 (source: NCBI BLink).  protein_id AT5G25280.1p  transcript_id AT5G25280.1  protein_id AT5G25280.1p  transcript_id AT5G25280.1  
At5g25280	chr5:008773882	0.0	W/8773882-8774544	AT5G25280.2  CDS  gene_syn F18G18.20, F18G18_20  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product serine-rich protein-related  note serine-rich protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: serine-rich protein-related (TAIR:AT5G11090.1); Has 1714 Blast hits to 295 proteins in 53 species: Archae - 0; Bacteria - 6; Metazoa - 724; Fungi - 65; Plants - 92; Viruses - 0; Other Eukaryotes - 827 (source: NCBI BLink).  protein_id AT5G25280.2p  transcript_id AT5G25280.2  protein_id AT5G25280.2p  transcript_id AT5G25280.2  
At5g25290	chr5:008778592	0.0	W/8778592-8779785	AT5G25290.1  CDS  gene_syn F18G18.30, F18G18_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G27540.2); Has 246 Blast hits to 234 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 246; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G25290.1p  transcript_id AT5G25290.1  protein_id AT5G25290.1p  transcript_id AT5G25290.1  
At5g25300	chr5:008780258	0.0	W/8780258-8780324,8780439-8780660,8780749-8781238,8781318-8781422,8781908-8781959,8782386-8782766,8782977-8783093	AT5G25300.1  CDS  gene_syn F18G18.40, F18G18_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G25290.1); Has 187 Blast hits to 131 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 182; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G25300.1p  transcript_id AT5G25300.1  protein_id AT5G25300.1p  transcript_id AT5G25300.1  
At5g25305	chr5:008783287	0.0	C/8783287-8783837	AT5G25305.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 9.2e-51 P-value blast match to Tat4-1 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)T24H24-Lys reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)  
At5g25310	chr5:008784820	0.0	W/8784820-8785080,8785390-8785553,8786123-8786471,8786567-8787235	AT5G25310.1  CDS  gene_syn F18G18.50, F18G18_50  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_function catalytic activity|GO:0003824||ISS  product catalytic  note catalytic; FUNCTIONS IN: catalytic activity; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G03795.1); Has 806 Blast hits to 804 proteins in 85 species: Archae - 0; Bacteria - 6; Metazoa - 238; Fungi - 4; Plants - 483; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT5G25310.1p  transcript_id AT5G25310.1  protein_id AT5G25310.1p  transcript_id AT5G25310.1  
At5g25320	chr5:008789460	0.0	C/8789460-8789530,8789302-8789353,8789089-8789203,8788932-8788999,8788137-8788844,8787950-8788054,8787403-8787786	AT5G25320.1  CDS  gene_syn F18G18.60, F18G18_60  go_process metabolic process|GO:0008152||IEA  go_function amino acid binding|GO:0016597||IEA  go_component cellular_component|GO:0005575||ND  product ACT domain-containing protein  note ACT domain-containing protein; FUNCTIONS IN: amino acid binding; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: ACR3; amino acid binding (TAIR:AT1G76990.5); Has 966 Blast hits to 778 proteins in 179 species: Archae - 2; Bacteria - 418; Metazoa - 0; Fungi - 0; Plants - 207; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).  protein_id AT5G25320.1p  transcript_id AT5G25320.1  protein_id AT5G25320.1p  transcript_id AT5G25320.1  
At5g25330	chr5:008791564	0.0	W/8791564-8792664	AT5G25330.1  CDS  gene_syn F18G18.70, F18G18_70  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF266, plant (InterPro:IPR004949); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32290.1); Has 324 Blast hits to 324 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 304; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT5G25330.1p  transcript_id AT5G25330.1  protein_id AT5G25330.1p  transcript_id AT5G25330.1  
At5g25340	chr5:008793238	0.0	W/8793238-8793331,8793433-8793532,8793617-8793716,8793804-8793880,8793956-8794211	AT5G25340.1  CDS  gene_syn F18G18.80, F18G18_80  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32270.1); Has 97 Blast hits to 97 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 56; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G25340.1p  transcript_id AT5G25340.1  protein_id AT5G25340.1p  transcript_id AT5G25340.1  
At5g25350	chr5:008796858	0.0	C/8796858-8796882,8794842-8796688	AT5G25350.1  CDS  gene_syn EBF2, EIN3-BINDING F BOX PROTEIN 2, F18G18.90, F18G18_90  gene EBF2  function Arabidopsis thaliana EIN3-binding F-box protein 2 (EBF2) mRNA. Part of the SCF complex, it is located in the nucleus and is involved in the ethylene-response pathway.  go_component nucleus|GO:0005634|14675532|TAS  go_component nucleus|GO:0005634|14675533|IDA  go_component SCF ubiquitin ligase complex|GO:0019005|14675533|IPI  go_process ubiquitin-dependent protein catabolic process|GO:0006511|14675532|TAS  go_process response to ethylene stimulus|GO:0009723|14675532|IMP  go_process negative regulation of ethylene mediated signaling pathway|GO:0010105|14675532|TAS  go_function protein binding|GO:0005515|14675532|IPI  go_function protein binding|GO:0005515|14675533|IPI  product EBF2 (EIN3-BINDING F BOX PROTEIN 2); protein binding  note EIN3-BINDING F BOX PROTEIN 2 (EBF2); FUNCTIONS IN: protein binding; INVOLVED IN: response to ethylene stimulus, negative regulation of ethylene mediated signaling pathway, ubiquitin-dependent protein catabolic process; LOCATED IN: SCF ubiquitin ligase complex, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: EBF1 (EIN3-BINDING F BOX PROTEIN 1); protein binding / ubiquitin-protein ligase (TAIR:AT2G25490.1); Has 8948 Blast hits to 3063 proteins in 183 species: Archae - 0; Bacteria - 375; Metazoa - 4654; Fungi - 873; Plants - 1851; Viruses - 6; Other Eukaryotes - 1189 (source: NCBI BLink).  protein_id AT5G25350.1p  transcript_id AT5G25350.1  protein_id AT5G25350.1p  transcript_id AT5G25350.1  
At5g25360	chr5:008802278	0.0	C/8802278-8802333,8801505-8801749,8800765-8800852,8800069-8800135,8799934-8799987	AT5G25360.1  CDS  gene_syn F18G18.100, F18G18_100  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32342.1); Has 74 Blast hits to 74 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G25360.1p  transcript_id AT5G25360.1  protein_id AT5G25360.1p  transcript_id AT5G25360.1  
At5g25370	chr5:008807452	0.0	C/8807452-8807547,8806154-8807366,8805049-8805756,8804240-8804685	AT5G25370.1  CDS  gene_syn F18G18.110, F18G18_110, PHOSPHLIPASE D ALPHA 3, PLDALPHA3  gene PLDALPHA3  function member of C2-PLD subfamily. Analyses on the gene structures/sequences, overall amino acid sequences, and domain structures indicate that PLDalpha3 is most closely related to other two PLDalphas than to other PLDs. Phylogenetic analysis has not identified a true ortholog for PLDalpha3. Involved in hyperosmotic response.  go_component membrane|GO:0016020||IEA  go_process response to water deprivation|GO:0009414|18364466|IMP  go_process response to salt stress|GO:0009651|18364466|IMP  go_process response to abscisic acid stimulus|GO:0009737|18364466|IMP  go_process membrane lipid catabolic process|GO:0046466|18364466|IMP  go_function phospholipase D activity|GO:0004630|11891260|IDA  go_function phospholipase D activity|GO:0004630||ISS  product PLDALPHA3 (PHOSPHLIPASE D ALPHA 3); phospholipase D  note PHOSPHLIPASE D ALPHA 3 (PLDALPHA3); FUNCTIONS IN: phospholipase D activity; INVOLVED IN: response to salt stress, response to water deprivation, membrane lipid catabolic process, response to abscisic acid stimulus; LOCATED IN: membrane; EXPRESSED IN: leaf apex, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phospholipase D, plant (InterPro:IPR011402), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), YLP motif (InterPro:IPR004019), C2 membrane targeting protein (InterPro:IPR018029), Phospholipase D (InterPro:IPR015679), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: PLDALPHA2 (phosphlipase d alpha 2); phospholipase D (TAIR:AT1G52570.1); Has 1364 Blast hits to 1002 proteins in 287 species: Archae - 0; Bacteria - 406; Metazoa - 272; Fungi - 289; Plants - 320; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT5G25370.1p  transcript_id AT5G25370.1  protein_id AT5G25370.1p  transcript_id AT5G25370.1  
At5g25380	chr5:008815230	0.0	W/8815230-8815520,8815607-8815748,8815832-8815953,8816060-8816152,8816268-8816401,8816594-8816669,8816767-8816843,8816940-8816973,8817060-8817209,8817292-8817426,8817507-8817566	AT5G25380.1  CDS  gene_syn CYCA2;1, F18G18.15, F18G18_15, cyclin a2;1  gene CYCA2;1  function core cell cycle genes  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process DNA endoreduplication|GO:0042023|17012601|IMP  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase regulator activity|GO:0016538||ISS  product CYCA2;1 (cyclin a2;1); cyclin-dependent protein kinase regulator  note cyclin a2;1 (CYCA2;1); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle, DNA endoreduplication; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin (InterPro:IPR006670), G2/mitotic-specific cyclin A (InterPro:IPR015453), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400); BEST Arabidopsis thaliana protein match is: CYC3B (MITOTIC-LIKE CYCLIN 3B FROM ARABIDOPSIS); cyclin-dependent protein kinase regulator (TAIR:AT5G11300.1); Has 3431 Blast hits to 3430 proteins in 300 species: Archae - 0; Bacteria - 2; Metazoa - 1770; Fungi - 375; Plants - 751; Viruses - 38; Other Eukaryotes - 495 (source: NCBI BLink).  protein_id AT5G25380.1p  transcript_id AT5G25380.1  protein_id AT5G25380.1p  transcript_id AT5G25380.1  
At5g25390	chr5:008820637	0.0	W/8820637-8820716,8821252-8821741	AT5G25390.2  CDS  gene_syn F18G18.130, F18G18_130, SHN2, shine2  gene SHN2  function encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.  go_component mitochondrion|GO:0005739||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product SHN2 (shine2); DNA binding / transcription factor  note shine2 (SHN2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: SHN3 (shine3); DNA binding / transcription factor (TAIR:AT5G11190.1); Has 3831 Blast hits to 3688 proteins in 202 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 3824; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G25390.2p  transcript_id AT5G25390.2  protein_id AT5G25390.2p  transcript_id AT5G25390.2  
At5g25390	chr5:008820637	0.0	W/8820637-8820716,8821261-8821741	AT5G25390.1  CDS  gene_syn F18G18.130, F18G18_130, SHN2, shine2  gene SHN2  function encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.  go_component mitochondrion|GO:0005739||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product SHN2 (shine2); DNA binding / transcription factor  note shine2 (SHN2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: SHN3 (shine3); DNA binding / transcription factor (TAIR:AT5G11190.1); Has 3658 Blast hits to 3575 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3654; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G25390.1p  transcript_id AT5G25390.1  protein_id AT5G25390.1p  transcript_id AT5G25390.1  
At5g25400	chr5:008823283	0.0	W/8823283-8824332	AT5G25400.1  CDS  gene_syn F18G18.140, F18G18_140  go_component endomembrane system|GO:0012505||IEA  go_function organic anion transmembrane transporter activity|GO:0008514||ISS  product phosphate translocator-related  note phosphate translocator-related; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: organic anion transmembrane transporter (TAIR:AT5G11230.1); Has 1573 Blast hits to 1573 proteins in 186 species: Archae - 0; Bacteria - 10; Metazoa - 433; Fungi - 268; Plants - 698; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).  protein_id AT5G25400.1p  transcript_id AT5G25400.1  protein_id AT5G25400.1p  transcript_id AT5G25400.1  
At5g25410	chr5:008831692	0.0	W/8831692-8831799,8831939-8832025,8832119-8832307,8832413-8832571,8832668-8832721,8832813-8832938,8833051-8833437	AT5G25410.1  CDS  gene_syn F18G18.150, F18G18_150  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G60380.1); Has 404 Blast hits to 382 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 10; Plants - 390; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G25410.1p  transcript_id AT5G25410.1  protein_id AT5G25410.1p  transcript_id AT5G25410.1  
At5g25415	chr5:008834247	0.0	W/8834247-8834345,8835332-8835362,8835492-8835538,8835670-8835756,8836124-8836282,8836371-8836424,8836518-8836649,8836781-8837176	AT5G25415.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25410.1); Has 389 Blast hits to 362 proteins in 15 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 8; Plants - 377; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G25415.1p  transcript_id AT5G25415.1  protein_id AT5G25415.1p  transcript_id AT5G25415.1  
At5g25420	chr5:008841619	0.0	C/8841619-8841775,8841439-8841536,8840762-8840938,8840578-8840678,8840401-8840476,8839787-8839971,8839604-8839667,8839472-8839508,8839048-8839137,8838864-8838941,8838622-8838747,8838417-8838487	AT5G25420.1  CDS  gene_syn F18G18.160, F18G18_160  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_function transmembrane transporter activity|GO:0022857||ISS  product xanthine/uracil permease family protein  note xanthine/uracil permease family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Xanthine/uracil permease (InterPro:IPR006042), Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: xanthine/uracil permease family protein (TAIR:AT1G65550.1); Has 3807 Blast hits to 3442 proteins in 758 species: Archae - 35; Bacteria - 2454; Metazoa - 341; Fungi - 62; Plants - 284; Viruses - 2; Other Eukaryotes - 629 (source: NCBI BLink).  protein_id AT5G25420.1p  transcript_id AT5G25420.1  protein_id AT5G25420.1p  transcript_id AT5G25420.1  
At5g25422	chr5:008845103	0.0	C/8845103-8845204	AT5G25422.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G25422.1p  transcript_id AT5G25422.1  protein_id AT5G25422.1p  transcript_id AT5G25422.1  
At5g25425	chr5:008848549	0.0	W/8848549-8848552,8848649-8848986	AT5G25425.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 480 Blast hits to 444 proteins in 90 species: Archae - 0; Bacteria - 13; Metazoa - 279; Fungi - 41; Plants - 94; Viruses - 6; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT5G25425.1p  transcript_id AT5G25425.1  protein_id AT5G25425.1p  transcript_id AT5G25425.1  
At5g25430	chr5:008851251	0.0	W/8851251-8851360,8851443-8851525,8851619-8851811,8851901-8852039,8852109-8852274,8852349-8852515,8852598-8852771,8852867-8852962,8853038-8853157,8853241-8853560,8853641-8853920,8854010-8854129,8854212-8854259	AT5G25430.1  CDS  gene_syn F18G18.170, F18G18_170  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process anion transport|GO:0006820||IEA  go_function anion exchanger activity|GO:0015380||ISS  product anion exchanger  note anion exchanger; FUNCTIONS IN: anion exchanger activity; INVOLVED IN: anion transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: male gametophyte, sepal, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, C-terminal (InterPro:IPR011531), Bicarbonate transporter, eukaryotic (InterPro:IPR003020); BEST Arabidopsis thaliana protein match is: anion exchanger (TAIR:AT4G32510.1); Has 2068 Blast hits to 1087 proteins in 147 species: Archae - 0; Bacteria - 17; Metazoa - 1702; Fungi - 192; Plants - 97; Viruses - 2; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT5G25430.1p  transcript_id AT5G25430.1  protein_id AT5G25430.1p  transcript_id AT5G25430.1  
At5g25440	chr5:008856665	0.0	C/8856665-8856722,8856377-8856573,8856059-8856194,8855561-8855703,8855352-8855478,8854975-8855255	AT5G25440.1  CDS  gene_syn F18G18.180, F18G18_180  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G11410.1); Has 37433 Blast hits to 37026 proteins in 1128 species: Archae - 24; Bacteria - 1745; Metazoa - 15094; Fungi - 1709; Plants - 13857; Viruses - 129; Other Eukaryotes - 4875 (source: NCBI BLink).  protein_id AT5G25440.1p  transcript_id AT5G25440.1  protein_id AT5G25440.1p  transcript_id AT5G25440.1  
At5g25450	chr5:008857036	0.0	W/8857036-8857129,8857211-8857368,8857649-8857696,8857781-8857849	AT5G25450.1  CDS  gene_syn F18G18.190, F18G18_190  go_component membrane|GO:0016020|17432890|IDA  go_process mitochondrial electron transport, ubiquinol to cytochrome c|GO:0006122||IEA  go_function ubiquinol-cytochrome-c reductase activity|GO:0008121||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial respiratory chain complex III|GO:0005750|18189341|IDA  go_process mitochondrial electron transport, ubiquinol to cytochrome c|GO:0006122||ISS  go_function ubiquinol-cytochrome-c reductase activity|GO:0008121||ISS  product ubiquinol-cytochrome C reductase complex 14 kDa protein, putative  note ubiquinol-cytochrome C reductase complex 14 kDa protein, putative; FUNCTIONS IN: ubiquinol-cytochrome-c reductase activity; INVOLVED IN: mitochondrial electron transport, ubiquinol to cytochrome c; LOCATED IN: mitochondrion, mitochondrial respiratory chain complex III, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome bd ubiquinol oxidase, 14 kDa subunit (InterPro:IPR003197); BEST Arabidopsis thaliana protein match is: ubiquinol-cytochrome C reductase complex 14 kDa protein, putative (TAIR:AT4G32470.1); Has 242 Blast hits to 242 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 160; Fungi - 25; Plants - 51; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G25450.1p  transcript_id AT5G25450.1  protein_id AT5G25450.1p  transcript_id AT5G25450.1  
At5g25451	chr5:008858201	0.0	C/8858201-8858951	AT5G25451.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G25440; protein kinase family protein  
At5g25460	chr5:008863430	0.0	W/8863430-8863514,8864274-8864771,8864868-8865394	AT5G25460.1  CDS  gene_syn F18G18.200, F18G18_200  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11420.1); Has 182 Blast hits to 159 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 180; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G25460.1p  transcript_id AT5G25460.1  protein_id AT5G25460.1p  transcript_id AT5G25460.1  
At5g25470	chr5:008867133	0.0	C/8867133-8867234,8866452-8866812,8866218-8866339,8865854-8866111	AT5G25470.1  CDS  gene_syn T14C9.20, T14C9_20  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT5G25475.3); Has 70 Blast hits to 70 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G25470.1p  transcript_id AT5G25470.1  protein_id AT5G25470.1p  transcript_id AT5G25470.1  
At5g25470	chr5:008867133	0.0	C/8867133-8867234,8866452-8866812,8866218-8866339,8865854-8866111	AT5G25470.2  CDS  gene_syn T14C9.20, T14C9_20  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT5G25475.3); Has 70 Blast hits to 70 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G25470.2p  transcript_id AT5G25470.2  protein_id AT5G25470.2p  transcript_id AT5G25470.2  
At5g25475	chr5:008869391	0.0	C/8869391-8869492,8868489-8868855,8868267-8868391,8867920-8868174	AT5G25475.1  CDS  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT5G25470.2); Has 59 Blast hits to 59 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G25475.1p  transcript_id AT5G25475.1  protein_id AT5G25475.1p  transcript_id AT5G25475.1  
At5g25475	chr5:008869391	0.0	C/8869391-8869492,8868489-8868855,8868267-8868391,8867920-8868174	AT5G25475.2  CDS  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT5G25470.2); Has 59 Blast hits to 59 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G25475.2p  transcript_id AT5G25475.2  protein_id AT5G25475.2p  transcript_id AT5G25475.2  
At5g25475	chr5:008869391	0.0	C/8869391-8869492,8868489-8868855,8868267-8868391,8867920-8868174	AT5G25475.3  CDS  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT5G25470.2); Has 59 Blast hits to 59 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G25475.3p  transcript_id AT5G25475.3  protein_id AT5G25475.3p  transcript_id AT5G25475.3  
At5g25480	chr5:008872119	0.0	C/8872119-8872199,8871925-8872035,8871708-8871801,8871513-8871631,8871290-8871412,8870663-8871082,8870508-8870573,8870349-8870413,8870069-8870141	AT5G25480.1  CDS  gene_syn DNA METHYLTRANSFERASE-2, DNMT2, T14C9.10, T14C9_10  gene DNMT2  function Encodes a DNA methyltransferase homolog. Human Dnmt2 methylates tRNA-Asp and can methylate Arabidopsis tRNA-Asp in vitro.  go_process DNA methylation|GO:0006306||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process DNA methylation|GO:0006306||ISS  go_function DNA binding|GO:0003677||ISS  product DNMT2 (DNA METHYLTRANSFERASE-2); DNA binding  note DNA METHYLTRANSFERASE-2 (DNMT2); FUNCTIONS IN: DNA binding; INVOLVED IN: DNA methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: C-5 cytosine-specific DNA methylase (InterPro:IPR001525); Has 1583 Blast hits to 1545 proteins in 432 species: Archae - 14; Bacteria - 902; Metazoa - 141; Fungi - 16; Plants - 25; Viruses - 29; Other Eukaryotes - 456 (source: NCBI BLink).  protein_id AT5G25480.1p  transcript_id AT5G25480.1  protein_id AT5G25480.1p  transcript_id AT5G25480.1  
At5g25490	chr5:008876639	0.0	W/8876639-8877060,8877249-8877339	AT5G25490.1  CDS  gene_syn T14C9.30, T14C9_30  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function binding|GO:0005488||ISS  product zinc finger (Ran-binding) family protein  note zinc finger (Ran-binding) family protein; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: zinc finger (Ran-binding) family protein (TAIR:AT3G15680.1); Has 1445 Blast hits to 838 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 868; Fungi - 124; Plants - 258; Viruses - 0; Other Eukaryotes - 195 (source: NCBI BLink).  protein_id AT5G25490.1p  transcript_id AT5G25490.1  protein_id AT5G25490.1p  transcript_id AT5G25490.1  
At5g25500	chr5:008881118	0.0	W/8881118-8882380	AT5G25500.1  CDS  gene_syn T14C9.40, T14C9_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G25500.1p  transcript_id AT5G25500.1  protein_id AT5G25500.1p  transcript_id AT5G25500.1  
At5g25510	chr5:008883180	0.0	C/8883180-8884325,8882728-8883084	AT5G25510.1  CDS  gene_syn T14C9.50, T14C9_50  go_component protein phosphatase type 2A complex|GO:0000159||IEA  go_component chloroplast|GO:0009507||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein phosphatase type 2A regulator activity|GO:0008601||IEA  go_component protein phosphatase type 2A complex|GO:0000159||ISS  go_process signal transduction|GO:0007165||ISS  go_function protein phosphatase type 2A regulator activity|GO:0008601||ISS  product serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B , putative  note serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B , putative; FUNCTIONS IN: protein phosphatase type 2A regulator activity; INVOLVED IN: signal transduction; LOCATED IN: chloroplast, protein phosphatase type 2A complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2A, regulatory B subunit, B56 (InterPro:IPR002554); BEST Arabidopsis thaliana protein match is: ATB  GAMMA; poly(U) binding / protein phosphatase type 2A regulator (TAIR:AT4G15415.2); Has 855 Blast hits to 848 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 492; Fungi - 97; Plants - 156; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT5G25510.1p  transcript_id AT5G25510.1  protein_id AT5G25510.1p  transcript_id AT5G25510.1  
At5g25520	chr5:008885550	0.0	W/8885550-8887576,8887836-8887956,8888098-8888157	AT5G25520.1  CDS  gene_syn T14C9.60, T14C9_60  go_process transcription|GO:0006350||IEA  product transcription elongation factor-related  note transcription elongation factor-related; INVOLVED IN: transcription; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue C-terminal (InterPro:IPR012921), Transcription elongation factor S-II, central region (InterPro:IPR003618); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT5G11430.1); Has 1685 Blast hits to 1328 proteins in 193 species: Archae - 0; Bacteria - 104; Metazoa - 753; Fungi - 254; Plants - 89; Viruses - 5; Other Eukaryotes - 480 (source: NCBI BLink).  protein_id AT5G25520.1p  transcript_id AT5G25520.1  protein_id AT5G25520.1p  transcript_id AT5G25520.1  
At5g25520	chr5:008885550	0.0	W/8885550-8887576,8887836-8887956,8888531-8888590,8888699-8889484	AT5G25520.2  CDS  gene_syn T14C9.60, T14C9_60  go_process transcription|GO:0006350||IEA  product transcription elongation factor-related  note transcription elongation factor-related; INVOLVED IN: transcription; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue C-terminal (InterPro:IPR012921), Transcription elongation factor S-II, central region (InterPro:IPR003618); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT5G11430.1); Has 1708 Blast hits to 1348 proteins in 195 species: Archae - 0; Bacteria - 102; Metazoa - 757; Fungi - 263; Plants - 95; Viruses - 7; Other Eukaryotes - 484 (source: NCBI BLink).  protein_id AT5G25520.2p  transcript_id AT5G25520.2  protein_id AT5G25520.2p  transcript_id AT5G25520.2  
At5g25530	chr5:008890786	0.0	C/8890786-8890954,8890189-8890624,8889665-8890103	AT5G25530.1  CDS  gene_syn T14C9.70, T14C9_70  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock protein, putative  note DNAJ heat shock protein, putative; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock protein, putative (TAIR:AT3G08910.1); Has 18875 Blast hits to 18724 proteins in 2099 species: Archae - 114; Bacteria - 5600; Metazoa - 3589; Fungi - 1555; Plants - 1319; Viruses - 10; Other Eukaryotes - 6688 (source: NCBI BLink).  protein_id AT5G25530.1p  transcript_id AT5G25530.1  protein_id AT5G25530.1p  transcript_id AT5G25530.1  
At5g25540	chr5:008891988	0.0	C/8891988-8892362,8891770-8891922	AT5G25540.1  CDS  gene_syn CID6, CTC-Interacting Domain 6, T14C9.80, T14C9_80  gene CID6  function Expressed protein contains PAM2 PABC interacting domain.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515|15650869|ISS  product CID6 (CTC-Interacting Domain 6); protein binding  note CTC-Interacting Domain 6 (CID6); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); BEST Arabidopsis thaliana protein match is: CID5; protein binding (TAIR:AT5G11440.1); Has 27 Blast hits to 27 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G25540.1p  transcript_id AT5G25540.1  protein_id AT5G25540.1p  transcript_id AT5G25540.1  
At5g25550	chr5:008894179	0.0	W/8894179-8895480	AT5G25550.1  CDS  gene_syn T14C9.90, T14C9_90  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function structural constituent of cell wall|GO:0005199|12644681|ISS  go_function protein binding|GO:0005515|12644681|ISS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein / extensin family protein  note leucine-rich repeat family protein / extensin family protein; FUNCTIONS IN: structural constituent of cell wall, protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / extensin family protein (TAIR:AT3G24480.1); Has 45288 Blast hits to 15167 proteins in 801 species: Archae - 24; Bacteria - 1861; Metazoa - 7751; Fungi - 1727; Plants - 29487; Viruses - 1105; Other Eukaryotes - 3333 (source: NCBI BLink).  protein_id AT5G25550.1p  transcript_id AT5G25550.1  protein_id AT5G25550.1p  transcript_id AT5G25550.1  
At5g25560	chr5:008899486	0.0	W/8899486-8899670,8899746-8899833,8899937-8899996,8900085-8900117,8900223-8900300,8900443-8900486,8900581-8900621,8900730-8900812,8900906-8900997,8901086-8901197,8901281-8901391	AT5G25560.1  CDS  gene_syn T14C9.100, T14C9_100  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CTCHY-type (InterPro:IPR017921), Zinc finger, CHY-type (InterPro:IPR008913), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G22920.1); Has 631 Blast hits to 629 proteins in 118 species: Archae - 2; Bacteria - 0; Metazoa - 274; Fungi - 89; Plants - 162; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT5G25560.1p  transcript_id AT5G25560.1  protein_id AT5G25560.1p  transcript_id AT5G25560.1  
At5g25560	chr5:008899486	0.0	W/8899486-8899670,8899746-8899833,8899937-8899996,8900085-8900117,8900223-8900300,8900443-8900486,8900581-8900621,8900730-8900812,8900906-8900997,8901086-8901201,8901287-8901453	AT5G25560.2  CDS  gene_syn T14C9.100, T14C9_100  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CTCHY-type (InterPro:IPR017921), Zinc finger, CHY-type (InterPro:IPR008913), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G22920.1); Has 656 Blast hits to 654 proteins in 120 species: Archae - 2; Bacteria - 0; Metazoa - 302; Fungi - 91; Plants - 160; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT5G25560.2p  transcript_id AT5G25560.2  protein_id AT5G25560.2p  transcript_id AT5G25560.2  
At5g25570	chr5:008901832	0.0	W/8901832-8901925,8902609-8902660,8902738-8902891	AT5G25570.1  CDS  gene_syn T14C9.110, T14C9_110  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 11 Blast hits to 11 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G25570.1p  transcript_id AT5G25570.1  protein_id AT5G25570.1p  transcript_id AT5G25570.1  
At5g25570	chr5:008901832	0.0	W/8901832-8901925,8902609-8902660,8902738-8902891	AT5G25570.2  CDS  gene_syn T14C9.110, T14C9_110  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 11 Blast hits to 11 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G25570.2p  transcript_id AT5G25570.2  protein_id AT5G25570.2p  transcript_id AT5G25570.2  
At5g25580	chr5:008903550	0.0	W/8903550-8903735,8903965-8904075,8904190-8904276,8904359-8904396,8904477-8904558,8904701-8904807,8904905-8905043,8905130-8905222,8905310-8905430,8905523-8905565,8905898-8906108	AT5G25580.1  CDS  gene_syn T14C9.120, T14C9_120  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: aminoacyl-tRNA synthetase family (TAIR:AT1G18950.1); Has 138 Blast hits to 138 proteins in 63 species: Archae - 0; Bacteria - 4; Metazoa - 48; Fungi - 29; Plants - 30; Viruses - 1; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT5G25580.1p  transcript_id AT5G25580.1  protein_id AT5G25580.1p  transcript_id AT5G25580.1  
At5g25585	chr5:008906416	0.0	W/8906416-8906499	AT5G25585.1  tRNA  gene_syn 67949.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: CAA)  transcript_id AT5G25585.1  
At5g25590	chr5:008908734	0.0	C/8908734-8909847,8907878-8908053,8907576-8907799,8906684-8907497	AT5G25590.1  CDS  gene_syn T14C9.130, T14C9_130  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  product unknown protein  note INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52320.4); Has 31848 Blast hits to 18905 proteins in 762 species: Archae - 79; Bacteria - 761; Metazoa - 15943; Fungi - 3494; Plants - 1748; Viruses - 431; Other Eukaryotes - 9392 (source: NCBI BLink).  protein_id AT5G25590.1p  transcript_id AT5G25590.1  protein_id AT5G25590.1p  transcript_id AT5G25590.1  
At5g25600	chr5:008913488	0.0	C/8913488-8914055,8912959-8913386	AT5G25600.1  CDS  gene_syn T14C9.140, T14C9_140  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: nucleic acid binding / zinc ion binding (TAIR:AT5G36228.1); Has 119 Blast hits to 119 proteins in 7 species: Archae - 0; Bacteria - 2; Metazoa - 11; Fungi - 0; Plants - 106; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G25600.1p  transcript_id AT5G25600.1  protein_id AT5G25600.1p  transcript_id AT5G25600.1  
At5g25610	chr5:008916640	0.0	C/8916640-8916684,8916447-8916546,8915372-8916078,8914498-8914824	AT5G25610.1  CDS  gene_syn RD22, T14C9.150, T14C9_150  gene RD22  function responsive to dehydration 22 (RD22) mediated by ABA  go_component endomembrane system|GO:0012505||IEA  go_process response to desiccation|GO:0009269||IEP  go_process response to salt stress|GO:0009651|11351099|IEP  go_process response to salt stress|GO:0009651|8479424|IEP  go_process response to abscisic acid stimulus|GO:0009737||IEP  go_function nutrient reservoir activity|GO:0045735||TAS  product RD22; nutrient reservoir  note RD22; FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: response to salt stress, response to desiccation, response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BURP (InterPro:IPR004873); BEST Arabidopsis thaliana protein match is: BURP domain-containing protein (TAIR:AT1G49320.1); Has 460 Blast hits to 380 proteins in 57 species: Archae - 2; Bacteria - 16; Metazoa - 6; Fungi - 38; Plants - 377; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT5G25610.1p  transcript_id AT5G25610.1  protein_id AT5G25610.1p  transcript_id AT5G25610.1  
At5g25615	chr5:008929177	0.0	W/8929177-8933835	AT5G25615.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 6.0e-122 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)  
At5g25620	chr5:008937535	0.0	C/8937535-8938224,8936084-8936332,8935867-8935989,8935520-8935711	AT5G25620.1  CDS  gene_syn T14C9.160, T14C9_160, YUC6, YUCCA6  gene YUC6  go_function flavin-containing monooxygenase activity|GO:0004499||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_process auxin biosynthetic process|GO:0009851|16818609|IMP  go_function monooxygenase activity|GO:0004497||ISS  product YUC6 (YUCCA6); FAD binding / NADP or NADPH binding / flavin-containing monooxygenase/ monooxygenase/ oxidoreductase  note YUCCA6 (YUC6); FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: auxin biosynthetic process; EXPRESSED IN: sepal; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960), Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027); BEST Arabidopsis thaliana protein match is: YUC2 (YUCCA2); FAD binding / NADP or NADPH binding / flavin-containing monooxygenase/ oxidoreductase (TAIR:AT4G13260.1); Has 6566 Blast hits to 6553 proteins in 759 species: Archae - 15; Bacteria - 3033; Metazoa - 663; Fungi - 868; Plants - 362; Viruses - 0; Other Eukaryotes - 1625 (source: NCBI BLink).  protein_id AT5G25620.1p  transcript_id AT5G25620.1  protein_id AT5G25620.1p  transcript_id AT5G25620.1  
At5g25625	chr5:008946824	0.0	C/8946824-8946896	AT5G25625.1  tRNA  gene_syn 67949.TRNA-PHE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Phe (anticodon: GAA)  transcript_id AT5G25625.1  
At5g25630	chr5:008947426	0.0	W/8947426-8947497,8947697-8948572,8948648-8949424	AT5G25630.1  CDS  gene_syn T14C9.170, T14C9_170  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G21222.1); Has 19068 Blast hits to 5732 proteins in 184 species: Archae - 3; Bacteria - 21; Metazoa - 595; Fungi - 399; Plants - 17210; Viruses - 0; Other Eukaryotes - 840 (source: NCBI BLink).  protein_id AT5G25630.1p  transcript_id AT5G25630.1  protein_id AT5G25630.1p  transcript_id AT5G25630.1  
At5g25640	chr5:008950140	0.0	C/8950140-8950331,8949995-8950057,8949849-8949902	AT5G25640.1  CDS  gene_syn T14C9.180, T14C9_180  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RBL11 (RHOMBOID-LIKE PROTEIN 11) (TAIR:AT5G25752.1); Has 53 Blast hits to 53 proteins in 25 species: Archae - 2; Bacteria - 28; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G25640.1p  transcript_id AT5G25640.1  protein_id AT5G25640.1p  transcript_id AT5G25640.1  
At5g25750	chr5:008950884	0.0	W/8950884-8950950,8950995-8951143	AT5G25750.1  CDS  gene_syn T14C9.190, T14C9_190  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G25750.1p  transcript_id AT5G25750.1  protein_id AT5G25750.1p  transcript_id AT5G25750.1  
At5g25752	chr5:008953143	0.0	C/8953143-8953323,8952901-8953025,8952692-8952777,8952267-8952307,8952017-8952183,8951873-8951935,8951503-8951682	AT5G25752.1  CDS  gene_syn ARABIDOPSIS RHOMBOID-LIKE PROTEIN 11, ATRBL11, RBL11, RHOMBOID-LIKE PROTEIN 11  gene RBL11  function Chloroplast-localized rhomboid-like protein.  go_component chloroplast|GO:0009507|18543065|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product RBL11 (RHOMBOID-LIKE PROTEIN 11)  note RHOMBOID-LIKE PROTEIN 11 (RBL11); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25640.1); Has 3256 Blast hits to 3256 proteins in 864 species: Archae - 79; Bacteria - 1827; Metazoa - 204; Fungi - 82; Plants - 149; Viruses - 0; Other Eukaryotes - 915 (source: NCBI BLink).  protein_id AT5G25752.1p  transcript_id AT5G25752.1  protein_id AT5G25752.1p  transcript_id AT5G25752.1  
At5g25754	chr5:008953564	0.0	W/8953564-8953917,8954049-8955028,8955120-8955213,8955306-8955377,8955467-8955511	AT5G25754.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25757.1); Has 298 Blast hits to 292 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 59; Plants - 28; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT5G25754.1p  transcript_id AT5G25754.1  protein_id AT5G25754.1p  transcript_id AT5G25754.1  
At5g25757	chr5:008967107	0.0	C/8967107-8967460,8965996-8966975,8965811-8965904,8965647-8965718,8965515-8965559	AT5G25757.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25754.1); Has 298 Blast hits to 292 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 59; Plants - 28; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT5G25757.1p  transcript_id AT5G25757.1  protein_id AT5G25757.1p  transcript_id AT5G25757.1  
At5g25760	chr5:008967983	0.0	W/8967983-8967988,8968072-8968320,8968403-8968532,8969085-8969173	AT5G25760.1  CDS  gene_syn F18A17.10, F18A17_10, PEROXIN4, PEX4, UBC21, ubiquitin-conjugating enzyme 21  gene PEX4  function mutant displays sucrose-dependent seedling development and reduced lateral root production. PEX4 interacts with PEX22 in a yeast two-hybrid. Necessary for peroxisome biogenesis. The PEX4 and PEX22 pair may be important during the remodeling of peroxisome matrix contents as glyoxysomes transition to leaf peroxisomes.  go_component cellular_component|GO:0005575||ND  go_process fatty acid beta-oxidation|GO:0006635|17478547|IMP  go_process peroxisome organization|GO:0007031|16272432|IMP  go_process protein import into peroxisome matrix|GO:0016558|17478547|IMP  go_function ubiquitin-protein ligase activity|GO:0004842|16272432|ISS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|16272432|IPI  product PEX4 (PEROXIN4); protein binding / ubiquitin-protein ligase  note PEROXIN4 (PEX4); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: protein import into peroxisome matrix, fatty acid beta-oxidation, peroxisome organization; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC10 (ubiquitin-conjugating enzyme 10); ubiquitin-protein ligase (TAIR:AT5G53300.2); Has 7646 Blast hits to 7644 proteins in 307 species: Archae - 0; Bacteria - 0; Metazoa - 3778; Fungi - 1431; Plants - 1125; Viruses - 19; Other Eukaryotes - 1293 (source: NCBI BLink).  protein_id AT5G25760.1p  transcript_id AT5G25760.1  protein_id AT5G25760.1p  transcript_id AT5G25760.1  
At5g25760	chr5:008967983	0.0	W/8967983-8967988,8968072-8968320,8968403-8968532,8969085-8969173	AT5G25760.2  CDS  gene_syn F18A17.10, F18A17_10, PEROXIN4, PEX4, UBC21, ubiquitin-conjugating enzyme 21  gene PEX4  function mutant displays sucrose-dependent seedling development and reduced lateral root production. PEX4 interacts with PEX22 in a yeast two-hybrid. Necessary for peroxisome biogenesis. The PEX4 and PEX22 pair may be important during the remodeling of peroxisome matrix contents as glyoxysomes transition to leaf peroxisomes.  go_component cellular_component|GO:0005575||ND  go_process fatty acid beta-oxidation|GO:0006635|17478547|IMP  go_process peroxisome organization|GO:0007031|16272432|IMP  go_process protein import into peroxisome matrix|GO:0016558|17478547|IMP  go_function ubiquitin-protein ligase activity|GO:0004842|16272432|ISS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|16272432|IPI  product PEX4 (PEROXIN4); protein binding / ubiquitin-protein ligase  note PEROXIN4 (PEX4); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: protein import into peroxisome matrix, fatty acid beta-oxidation, peroxisome organization; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC10 (ubiquitin-conjugating enzyme 10); ubiquitin-protein ligase (TAIR:AT5G53300.2); Has 7646 Blast hits to 7644 proteins in 307 species: Archae - 0; Bacteria - 0; Metazoa - 3778; Fungi - 1431; Plants - 1125; Viruses - 19; Other Eukaryotes - 1293 (source: NCBI BLink).  protein_id AT5G25760.2p  transcript_id AT5G25760.2  protein_id AT5G25760.2p  transcript_id AT5G25760.2  
At5g25770	chr5:008971311	0.0	C/8971311-8971389,8971136-8971206,8970979-8971059,8970763-8970891,8970584-8970670,8970426-8970479,8970253-8970343,8970095-8970165,8969918-8969987,8969673-8969819,8969498-8969595,8969308-8969412	AT5G25770.1  CDS  gene_syn F18A17.20, F18A17_20  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 850 Blast hits to 848 proteins in 274 species: Archae - 26; Bacteria - 687; Metazoa - 0; Fungi - 22; Plants - 18; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).  protein_id AT5G25770.1p  transcript_id AT5G25770.1  protein_id AT5G25770.1p  transcript_id AT5G25770.1  
At5g25770	chr5:008971673	0.0	C/8971673-8971806,8971311-8971429,8971136-8971206,8970979-8971059,8970763-8970891,8970584-8970670,8970426-8970479,8970253-8970343,8970095-8970165,8969918-8969987,8969673-8969819,8969498-8969595,8969308-8969412	AT5G25770.2  CDS  gene_syn F18A17.20, F18A17_20  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 852 Blast hits to 850 proteins in 275 species: Archae - 26; Bacteria - 689; Metazoa - 0; Fungi - 22; Plants - 18; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).  protein_id AT5G25770.2p  transcript_id AT5G25770.2  protein_id AT5G25770.2p  transcript_id AT5G25770.2  
At5g25770	chr5:008971673	0.0	C/8971673-8971806,8971311-8971438,8971136-8971206,8970979-8971059,8970763-8970891,8970584-8970670,8970426-8970479,8970253-8970343,8970095-8970165,8969918-8969987,8969673-8969819,8969498-8969595,8969308-8969412	AT5G25770.3  CDS  gene_syn F18A17.20, F18A17_20  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 852 Blast hits to 850 proteins in 275 species: Archae - 26; Bacteria - 689; Metazoa - 0; Fungi - 22; Plants - 18; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).  protein_id AT5G25770.3p  transcript_id AT5G25770.3  protein_id AT5G25770.3p  transcript_id AT5G25770.3  
At5g25780	chr5:008976646	0.0	C/8976646-8976758,8976294-8976531,8976004-8976150,8975592-8975720,8975378-8975506,8975206-8975289,8974994-8975118,8974691-8974889,8974051-8974583,8973847-8973955,8973420-8973758	AT5G25780.1  CDS  gene_syn ATEIF3B-2, EIF3B, EIF3B-2, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2, F18A17.30, F18A17_30  gene EIF3B-2  function member of eIF3b - eukaryotic initiation factor 3b  go_process translational initiation|GO:0006413||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytoplasm|GO:0005737|11029466|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_function nucleic acid binding|GO:0003676||ISS  go_function translation initiation factor activity|GO:0003743|11029466|TAS  go_function translation initiation factor activity|GO:0003743|11042177|ISS  go_function translation initiation factor activity|GO:0003743||ISS  go_function protein binding|GO:0005515|11029466|IPI  product EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2); nucleic acid binding / protein binding / translation initiation factor  note EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2 (EIF3B-2); FUNCTIONS IN: protein binding, translation initiation factor activity, nucleic acid binding; INVOLVED IN: translational initiation; LOCATED IN: cytosol, nucleus, cytoplasm; EXPRESSED IN: cultured cell, seed; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Eukaryotic translation initiation factor 2A, central region (InterPro:IPR013979), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Translation initiation factor eIF-3b (InterPro:IPR011400), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: TIF3B1 (TRANSLATION INITIATION FACTOR 3B1); nucleic acid binding / translation initiation factor (TAIR:AT5G27640.1); Has 664 Blast hits to 662 proteins in 169 species: Archae - 0; Bacteria - 15; Metazoa - 227; Fungi - 187; Plants - 55; Viruses - 0; Other Eukaryotes - 180 (source: NCBI BLink).  protein_id AT5G25780.1p  transcript_id AT5G25780.1  protein_id AT5G25780.1p  transcript_id AT5G25780.1  
At5g25790	chr5:008978973	0.0	C/8978973-8979181,8978780-8978890,8978529-8978706,8978116-8978457,8977934-8978022,8977760-8977854,8977345-8977665,8977233-8977267	AT5G25790.1  CDS  gene_syn F18A17.40, F18A17_40  go_component cellular_component|GO:0005575||ND  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tesmin/TSO1-like, CXC (InterPro:IPR005172); BEST Arabidopsis thaliana protein match is: tesmin/TSO1-like CXC domain-containing protein (TAIR:AT4G29000.1); Has 778 Blast hits to 534 proteins in 71 species: Archae - 0; Bacteria - 3; Metazoa - 282; Fungi - 0; Plants - 180; Viruses - 0; Other Eukaryotes - 313 (source: NCBI BLink).  protein_id AT5G25790.1p  transcript_id AT5G25790.1  protein_id AT5G25790.1p  transcript_id AT5G25790.1  
At5g25800	chr5:008982614	0.0	C/8982614-8982724,8982478-8982528,8982310-8982375,8982088-8982221,8981879-8981988,8981654-8981776,8981480-8981550,8981282-8981341,8981153-8981208,8981003-8981063,8980632-8980899,8980355-8980536,8979983-8980269,8979761-8979884	AT5G25800.1  CDS  gene_syn F18A17.50, F18A17_50  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function exonuclease activity|GO:0004527||IEA  go_component intracellular|GO:0005622||ISS  go_function exonuclease activity|GO:0004527||ISS  product exonuclease family protein  note exonuclease family protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T and DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: SDN1 (SMALL RNA DEGRADING NUCLEASE 1); 3 -5  exonuclease/ exonuclease (TAIR:AT3G50100.1); Has 1347 Blast hits to 1319 proteins in 179 species: Archae - 0; Bacteria - 4; Metazoa - 658; Fungi - 453; Plants - 109; Viruses - 2; Other Eukaryotes - 121 (source: NCBI BLink).  protein_id AT5G25800.1p  transcript_id AT5G25800.1  protein_id AT5G25800.1p  transcript_id AT5G25800.1  
At5g25810	chr5:008986976	0.0	C/8986976-8987632	AT5G25810.1  CDS  gene_syn F18A17.60, F18A17_60, TINY, tny  gene tny  function encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family (TINY). The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Ectopic or overexpression of this gene in a Ds tagged line has reduced cell expansion. The expression of this gene is induced by ethylene and light and appears to stimulate cytokinin biosynthesis.  go_process multidimensional cell growth|GO:0009825|8624440|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product tny (TINY); DNA binding / transcription factor  note TINY (tny); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: multidimensional cell growth; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: TINY2 (TINY2); DNA binding / transcription factor (TAIR:AT5G11590.1); Has 3808 Blast hits to 3691 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 3; Plants - 3795; Viruses - 2; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G25810.1p  transcript_id AT5G25810.1  protein_id AT5G25810.1p  transcript_id AT5G25810.1  
At5g25820	chr5:008998762	0.0	C/8998762-8999574,8998551-8998681,8998117-8998468,8997248-8997916	AT5G25820.1  CDS  gene_syn F18A17.70, F18A17_70  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_function catalytic activity|GO:0003824||ISS  product exostosin family protein  note exostosin family protein; FUNCTIONS IN: catalytic activity; LOCATED IN: membrane; EXPRESSED IN: stem, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: exostosin family protein (TAIR:AT4G32790.1); Has 8434 Blast hits to 4016 proteins in 504 species: Archae - 32; Bacteria - 1053; Metazoa - 1697; Fungi - 739; Plants - 1189; Viruses - 158; Other Eukaryotes - 3566 (source: NCBI BLink).  protein_id AT5G25820.1p  transcript_id AT5G25820.1  protein_id AT5G25820.1p  transcript_id AT5G25820.1  
At5g25830	chr5:009005281	0.0	C/9005281-9005502,9004398-9005171	AT5G25830.1  CDS  gene_syn F18A17.80, F18A17_80  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product zinc finger (GATA type) family protein  note zinc finger (GATA type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: zinc finger (GATA type) family protein (TAIR:AT4G32890.1); Has 924 Blast hits to 909 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 32; Fungi - 410; Plants - 433; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT5G25830.1p  transcript_id AT5G25830.1  protein_id AT5G25830.1p  transcript_id AT5G25830.1  
At5g25840	chr5:009010909	0.0	C/9010909-9011430	AT5G25840.1  CDS  gene_syn F18A17.90, F18A17_90  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1677, plant (InterPro:IPR012876); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79770.1); Has 132 Blast hits to 131 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G25840.1p  transcript_id AT5G25840.1  protein_id AT5G25840.1p  transcript_id AT5G25840.1  
At5g25850	chr5:009014082	0.0	W/9014082-9015002,9015086-9015337,9015645-9015917	AT5G25850.1  CDS  gene_syn F18A17.100, F18A17_100  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G53640.1); Has 1185 Blast hits to 1154 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1185; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G25850.1p  transcript_id AT5G25850.1  protein_id AT5G25850.1p  transcript_id AT5G25850.1  
At5g25860	chr5:009017468	0.0	C/9017468-9018424,9017258-9017398,9016908-9017156	AT5G25860.1  CDS  gene_syn F18A17.110, F18A17_110  go_component vacuole|GO:0005773|14760709|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G40050.1); Has 1017 Blast hits to 986 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1017; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G25860.1p  transcript_id AT5G25860.1  protein_id AT5G25860.1p  transcript_id AT5G25860.1  
At5g25870	chr5:009020028	0.0	C/9020028-9020255,9019872-9019955,9019591-9019800	AT5G25870.1  CDS  gene_syn T1N24.101, T1N24_101  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 8619 Blast hits to 5405 proteins in 420 species: Archae - 149; Bacteria - 577; Metazoa - 3034; Fungi - 354; Plants - 140; Viruses - 61; Other Eukaryotes - 4304 (source: NCBI BLink).  protein_id AT5G25870.1p  transcript_id AT5G25870.1  protein_id AT5G25870.1p  transcript_id AT5G25870.1  
At5g25880	chr5:009024549	0.0	W/9024549-9024691,9024896-9025016,9025097-9025171,9025247-9025398,9025481-9025586,9025668-9025733,9025811-9025906,9026002-9026073,9026150-9026233,9026325-9026423,9026507-9026554,9026649-9026702,9026779-9026877,9026961-9027050,9027136-9027213,9027306-9027380,9027456-9027546,9027903-9028031,9028172-9028260	AT5G25880.1  CDS  gene_syn ATNADP-ME3, NADP-malic enzyme 3, T1N24.25, T1N24_25  gene ATNADP-ME3  function The malic enzyme (EC 1.1.1.40) encoded by the ATNADP-ME3 is presumably cytosolic and restricted in its expression by both developmental and cell-specific signals.  go_process malate metabolic process|GO:0006108||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_component cellular_component|GO:0005575||ND  go_process malate metabolic process|GO:0006108||ISS  go_function malic enzyme activity|GO:0004470||ISS  go_function malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|GO:0004473|16113210|IDA  go_function oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor|GO:0016652||ISS  product ATNADP-ME3 (NADP-malic enzyme 3); malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor  note NADP-malic enzyme 3 (ATNADP-ME3); FUNCTIONS IN: oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor, malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity, malic enzyme activity; INVOLVED IN: oxidation reduction, N-terminal protein myristoylation, malate metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Malic oxidoreductase (InterPro:IPR001891), Malic enzyme, NAD-binding (InterPro:IPR012302), Malic enzyme, conserved site (InterPro:IPR015884), Malic enzyme, N-terminal (InterPro:IPR012301), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: ATNADP-ME2 (NADP-malic enzyme 2); malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor (TAIR:AT5G11670.1); Has 6052 Blast hits to 6040 proteins in 1334 species: Archae - 86; Bacteria - 3257; Metazoa - 556; Fungi - 153; Plants - 276; Viruses - 0; Other Eukaryotes - 1724 (source: NCBI BLink).  protein_id AT5G25880.1p  transcript_id AT5G25880.1  protein_id AT5G25880.1p  transcript_id AT5G25880.1  
At5g25890	chr5:009033480	0.0	W/9033480-9033607,9033799-9034110,9034374-9034438,9034532-9034554	AT5G25890.1  CDS  gene_syn IAA-ALANINE RESISTANT 2, IAA28, IAR2, INDOLE-3-ACETIC ACID INDUCIBLE 28, T1N24.24, T1N24_24  gene IAA28  function encodes a protein that may be a negative regulator of lateral root formation in response to auxin. It is a member of IAA/ARF gene family and is plant-specific. Gain of function mutations in this gene suppresses lateral root formation and is resistant to inhibition of root elongation by auxin, cytokinin, and ethylene.  go_component nucleus|GO:0005634||IEA  go_component intracellular|GO:0005622||ISS  go_process regulation of translation|GO:0006417||ISS  go_process response to auxin stimulus|GO:0009733|11251090|IMP  go_process lateral root morphogenesis|GO:0010102|11251090|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28); transcription factor  note INDOLE-3-ACETIC ACID INDUCIBLE 28 (IAA28); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to auxin stimulus, lateral root morphogenesis, regulation of translation; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA18 (INDOLE-3-ACETIC ACID INDUCIBLE 18); transcription factor (TAIR:AT1G51950.1); Has 1221 Blast hits to 1221 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1221; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G25890.1p  transcript_id AT5G25890.1  protein_id AT5G25890.1p  transcript_id AT5G25890.1  
At5g25900	chr5:009036073	0.0	W/9036073-9036208,9036370-9036530,9036725-9036886,9036980-9037120,9037201-9037455,9037525-9037881,9037961-9038278	AT5G25900.1  CDS  gene_syn ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, ATKO1, CYP701A3, CYTOCHROME P450 701 A3, ENT-KAURENE OXIDASE, GA REQUIRING 3, GA3, KO, T1N24.23, T1N24_23  gene GA3  function Encodes a member of the CYP701A cytochrome p450 family that is involved in later steps of the gibberellin biosynthetic pathway.  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component microsome|GO:0005792|9671797|NAS  go_component chloroplast outer membrane|GO:0009707|11722763|IDA  go_process gibberellin biosynthetic process|GO:0009686|9671797|TAS  go_process gibberellin biosynthetic process|GO:0009686|9952446|IDA  go_process gibberellic acid mediated signaling|GO:0009740|9671797|TAS  go_function ent-kaurene oxidase activity|GO:0010241|9671797|IMP  go_function oxygen binding|GO:0019825|9671797|IMP  go_function oxygen binding|GO:0019825|9671797|ISS  product GA3 (GA REQUIRING 3); ent-kaurene oxidase/ oxygen binding  note GA REQUIRING 3 (GA3); FUNCTIONS IN: ent-kaurene oxidase activity, oxygen binding; INVOLVED IN: gibberellin biosynthetic process, gibberellic acid mediated signaling; LOCATED IN: chloroplast outer membrane, endoplasmic reticulum, microsome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP71B35; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G26310.1); Has 22608 Blast hits to 22252 proteins in 1231 species: Archae - 32; Bacteria - 2311; Metazoa - 10309; Fungi - 3741; Plants - 5270; Viruses - 3; Other Eukaryotes - 942 (source: NCBI BLink).  protein_id AT5G25900.1p  transcript_id AT5G25900.1  protein_id AT5G25900.1p  transcript_id AT5G25900.1  
At5g25910	chr5:009038860	0.0	W/9038860-9040132,9040215-9041377	AT5G25910.1  CDS  gene_syn AtRLP52, Receptor Like Protein 52, T1N24.21, T1N24_21  gene AtRLP52  function putative disease resistance protein induced by chitin oligomers.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_process signal transduction|GO:0007165|11751054|IC  go_process response to chitin|GO:0010200|15923325|IEP  go_process defense response to fungus|GO:0050832|15923325|IMP  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  go_function kinase activity|GO:0016301||ISS  product AtRLP52 (Receptor Like Protein 52); kinase/ protein binding  note Receptor Like Protein 52 (AtRLP52); FUNCTIONS IN: protein binding, kinase activity; INVOLVED IN: signal transduction, defense response to fungus, response to chitin, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / protein kinase family protein (TAIR:AT5G25930.1); Has 75140 Blast hits to 20795 proteins in 866 species: Archae - 47; Bacteria - 4813; Metazoa - 23401; Fungi - 898; Plants - 39897; Viruses - 4; Other Eukaryotes - 6080 (source: NCBI BLink).  protein_id AT5G25910.1p  transcript_id AT5G25910.1  protein_id AT5G25910.1p  transcript_id AT5G25910.1  
At5g25920	chr5:009045467	0.0	C/9045467-9045997,9044974-9045377,9044761-9044893,9044206-9044670	AT5G25920.1  CDS  gene_syn T1N24.2, T1N24_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ATP binding / aminoacyl-tRNA ligase/ aspartic-type endopeptidase/ nucleotide binding (TAIR:AT3G29750.1); Has 3 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G25920.1p  transcript_id AT5G25920.1  protein_id AT5G25920.1p  transcript_id AT5G25920.1  
At5g25930	chr5:009050880	0.0	W/9050880-9053478,9053560-9053978	AT5G25930.1  CDS  gene_syn F18A17.4  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat family protein / protein kinase family protein  note leucine-rich repeat family protein / protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: AtRLP52 (Receptor Like Protein 52); kinase/ protein binding (TAIR:AT5G25910.1); Has 141916 Blast hits to 99081 proteins in 3479 species: Archae - 73; Bacteria - 11637; Metazoa - 53989; Fungi - 7333; Plants - 48905; Viruses - 349; Other Eukaryotes - 19630 (source: NCBI BLink).  protein_id AT5G25930.1p  transcript_id AT5G25930.1  protein_id AT5G25930.1p  transcript_id AT5G25930.1  
At5g25940	chr5:009055046	0.0	C/9055046-9055151,9054900-9054961,9054567-9054642,9054252-9054355	AT5G25940.1  CDS  gene_syn T1N24.3, T1N24_3  go_component mitochondrion|GO:0005739|15276431|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function molecular_function|GO:0003674||ND  product early nodulin-related  note early nodulin-related; FUNCTIONS IN: molecular_function unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Early nodulin 93 ENOD93 protein (InterPro:IPR005050); Has 95 Blast hits to 95 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G25940.1p  transcript_id AT5G25940.1  protein_id AT5G25940.1p  transcript_id AT5G25940.1  
At5g25950	chr5:009059681	0.0	C/9059681-9059860,9059503-9059589,9059111-9059395,9058851-9059012,9058718-9058771,9058480-9058626,9057929-9058312	AT5G25950.1  CDS  gene_syn T1N24.4, T1N24_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25960.1); Has 430 Blast hits to 393 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 10; Plants - 416; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G25950.1p  transcript_id AT5G25950.1  protein_id AT5G25950.1p  transcript_id AT5G25950.1  
At5g25955	chr5:009061651	0.0	W/9061651-9062419	AT5G25955.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.7e-17 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At5g25960	chr5:009064889	0.0	C/9064889-9065011,9064723-9064809,9064478-9064597,9063969-9064130,9063836-9063889,9063611-9063742,9062917-9063297	AT5G25960.1  CDS  gene_syn T1N24.5, T1N24_5  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25950.1); Has 406 Blast hits to 385 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 10; Plants - 392; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G25960.1p  transcript_id AT5G25960.1  protein_id AT5G25960.1p  transcript_id AT5G25960.1  
At5g25970	chr5:009066697	0.0	W/9066697-9067221,9067336-9067974	AT5G25970.1  CDS  gene_syn T1N24.19, T1N24_19  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF266, plant (InterPro:IPR004949); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11730.1); Has 335 Blast hits to 335 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 306; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT5G25970.1p  transcript_id AT5G25970.1  protein_id AT5G25970.1p  transcript_id AT5G25970.1  
At5g25980	chr5:009072730	0.0	W/9072730-9072936,9073034-9073094,9073261-9073322,9073408-9073483,9073577-9073742,9073846-9074101,9074194-9074306,9074411-9074628,9074733-9074767,9074844-9074943,9075034-9075139,9075234-9075477	AT5G25980.2  CDS  gene_syn BETA GLUCOSIDASE 37, BGLU37, GLUCOSIDE GLUCOHYDROLASE 2, T1N24.18, T1N24_18, TGG2  gene TGG2  function Myrosinase (thioglucoside glucohydrolase) gene involved in glucosinoloate metabolism.  go_component vacuole|GO:0005773|15539469|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process glucosinolate catabolic process|GO:0019762|16640593|IMP  go_process glucosinolate catabolic process|GO:0019762|7766881|NAS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function thioglucosidase activity|GO:0019137|16640593|IMP  go_function thioglucosidase activity|GO:0019137|7766881|TAS  product TGG2 (GLUCOSIDE GLUCOHYDROLASE 2); hydrolase, hydrolyzing O-glycosyl compounds / thioglucosidase  note GLUCOSIDE GLUCOHYDROLASE 2 (TGG2); FUNCTIONS IN: thioglucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: glucosinolate catabolic process; LOCATED IN: cytosolic ribosome, apoplast, peroxisome, chloroplast, vacuole; EXPRESSED IN: phloem, vascular bundle, fruit, guard cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: TGG1 (THIOGLUCOSIDE GLUCOHYDROLASE 1); hydrolase, hydrolyzing O-glycosyl compounds / thioglucosidase (TAIR:AT5G26000.1); Has 5733 Blast hits to 5478 proteins in 792 species: Archae - 88; Bacteria - 3139; Metazoa - 599; Fungi - 133; Plants - 843; Viruses - 0; Other Eukaryotes - 931 (source: NCBI BLink).  protein_id AT5G25980.2p  transcript_id AT5G25980.2  protein_id AT5G25980.2p  transcript_id AT5G25980.2  
At5g25980	chr5:009072730	0.0	W/9072730-9072936,9073034-9073094,9073261-9073322,9073408-9073483,9073577-9073742,9073846-9074101,9074194-9074306,9074411-9074628,9074733-9074767,9074844-9074943,9075034-9075143	AT5G25980.1  CDS  gene_syn BETA GLUCOSIDASE 37, BGLU37, GLUCOSIDE GLUCOHYDROLASE 2, T1N24.18, T1N24_18, TGG2  gene TGG2  function Myrosinase (thioglucoside glucohydrolase) gene involved in glucosinoloate metabolism.  go_component vacuole|GO:0005773|15539469|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process glucosinolate catabolic process|GO:0019762|16640593|IMP  go_process glucosinolate catabolic process|GO:0019762|7766881|NAS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function thioglucosidase activity|GO:0019137|16640593|IMP  go_function thioglucosidase activity|GO:0019137|7766881|TAS  product TGG2 (GLUCOSIDE GLUCOHYDROLASE 2); hydrolase, hydrolyzing O-glycosyl compounds / thioglucosidase  note GLUCOSIDE GLUCOHYDROLASE 2 (TGG2); FUNCTIONS IN: thioglucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: glucosinolate catabolic process; LOCATED IN: cytosolic ribosome, apoplast, peroxisome, chloroplast, vacuole; EXPRESSED IN: phloem, vascular bundle, fruit, guard cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: TGG1 (THIOGLUCOSIDE GLUCOHYDROLASE 1); hydrolase, hydrolyzing O-glycosyl compounds / thioglucosidase (TAIR:AT5G26000.2); Has 5306 Blast hits to 5112 proteins in 785 species: Archae - 85; Bacteria - 3042; Metazoa - 577; Fungi - 131; Plants - 820; Viruses - 0; Other Eukaryotes - 651 (source: NCBI BLink).  protein_id AT5G25980.1p  transcript_id AT5G25980.1  protein_id AT5G25980.1p  transcript_id AT5G25980.1  
At5g25980	chr5:009072730	0.0	W/9072730-9072936,9073034-9073094,9073261-9073322,9073408-9073483,9073577-9073742,9073846-9074101,9074194-9074306,9074411-9074628,9074733-9074767,9074844-9074943,9075034-9075143	AT5G25980.3  CDS  gene_syn BETA GLUCOSIDASE 37, BGLU37, GLUCOSIDE GLUCOHYDROLASE 2, T1N24.18, T1N24_18, TGG2  gene TGG2  function Myrosinase (thioglucoside glucohydrolase) gene involved in glucosinoloate metabolism.  go_component vacuole|GO:0005773|15539469|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process glucosinolate catabolic process|GO:0019762|16640593|IMP  go_process glucosinolate catabolic process|GO:0019762|7766881|NAS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function thioglucosidase activity|GO:0019137|16640593|IMP  go_function thioglucosidase activity|GO:0019137|7766881|TAS  product TGG2 (GLUCOSIDE GLUCOHYDROLASE 2); hydrolase, hydrolyzing O-glycosyl compounds / thioglucosidase  note GLUCOSIDE GLUCOHYDROLASE 2 (TGG2); FUNCTIONS IN: thioglucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: glucosinolate catabolic process; LOCATED IN: cytosolic ribosome, apoplast, chloroplast, peroxisome, vacuole; EXPRESSED IN: phloem, vascular bundle, fruit, guard cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: TGG1 (THIOGLUCOSIDE GLUCOHYDROLASE 1); hydrolase, hydrolyzing O-glycosyl compounds / thioglucosidase (TAIR:AT5G26000.2); Has 5306 Blast hits to 5112 proteins in 785 species: Archae - 85; Bacteria - 3042; Metazoa - 577; Fungi - 131; Plants - 820; Viruses - 0; Other Eukaryotes - 651 (source: NCBI BLink).  protein_id AT5G25980.3p  transcript_id AT5G25980.3  protein_id AT5G25980.3p  transcript_id AT5G25980.3  
At5g25990	chr5:009077254	0.0	C/9077254-9077379,9076300-9076394,9076107-9076191	AT5G25990.1  CDS  gene_syn T1N24.6, T1N24_6  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF266, plant (InterPro:IPR004949); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25970.1); Has 56 Blast hits to 56 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G25990.1p  transcript_id AT5G25990.1  protein_id AT5G25990.1p  transcript_id AT5G25990.1  
At5g26000	chr5:009082177	0.0	C/9082177-9082347,9082012-9082072,9081834-9081895,9081654-9081729,9081388-9081553,9081049-9081304,9080824-9080939,9080521-9080741,9080403-9080437,9080214-9080313,9080009-9080115	AT5G26000.2  CDS  gene_syn BETA GLUCOSIDASE 38, BGLU38, TGG1, THIOGLUCOSIDE GLUCOHYDROLASE, THIOGLUCOSIDE GLUCOHYDROLASE 1  gene TGG1  function member of Glycoside Hydrolase Family 1. encodes one of two known functional myrosinase enzymes in Arabidopsis. The enzyme catalyzes the hydrolysis of glucosinolates into compounds that are toxic to various microbes and herbivores.  go_component vacuole|GO:0005773|15539469|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process glucosinolate catabolic process|GO:0019762|16640593|IMP  go_process glucosinolate catabolic process|GO:0019762|7766881|NAS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function thioglucosidase activity|GO:0019137|15643972|IDA  go_function thioglucosidase activity|GO:0019137|7766881|ISS  product TGG1 (THIOGLUCOSIDE GLUCOHYDROLASE 1); hydrolase, hydrolyzing O-glycosyl compounds / thioglucosidase  note THIOGLUCOSIDE GLUCOHYDROLASE 1 (TGG1); FUNCTIONS IN: thioglucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: glucosinolate catabolic process; LOCATED IN: in 7 components; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: TGG2 (GLUCOSIDE GLUCOHYDROLASE 2); hydrolase, hydrolyzing O-glycosyl compounds / thioglucosidase (TAIR:AT5G25980.3); Has 5300 Blast hits to 5105 proteins in 784 species: Archae - 83; Bacteria - 3039; Metazoa - 581; Fungi - 129; Plants - 819; Viruses - 0; Other Eukaryotes - 649 (source: NCBI BLink).  protein_id AT5G26000.2p  transcript_id AT5G26000.2  protein_id AT5G26000.2p  transcript_id AT5G26000.2  
At5g26000	chr5:009082177	0.0	C/9082177-9082347,9082012-9082072,9081834-9081895,9081654-9081729,9081388-9081553,9081049-9081304,9080824-9080939,9080521-9080741,9080403-9080437,9080214-9080313,9080013-9080115,9079678-9079936	AT5G26000.1  CDS  gene_syn BETA GLUCOSIDASE 38, BGLU38, TGG1, THIOGLUCOSIDE GLUCOHYDROLASE, THIOGLUCOSIDE GLUCOHYDROLASE 1  gene TGG1  function member of Glycoside Hydrolase Family 1. encodes one of two known functional myrosinase enzymes in Arabidopsis. The enzyme catalyzes the hydrolysis of glucosinolates into compounds that are toxic to various microbes and herbivores.  go_component vacuole|GO:0005773|15539469|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process glucosinolate catabolic process|GO:0019762|16640593|IMP  go_process glucosinolate catabolic process|GO:0019762|7766881|NAS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function thioglucosidase activity|GO:0019137|15643972|IDA  go_function thioglucosidase activity|GO:0019137|7766881|ISS  product TGG1 (THIOGLUCOSIDE GLUCOHYDROLASE 1); hydrolase, hydrolyzing O-glycosyl compounds / thioglucosidase  note THIOGLUCOSIDE GLUCOHYDROLASE 1 (TGG1); FUNCTIONS IN: thioglucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: glucosinolate catabolic process; LOCATED IN: in 7 components; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: TGG2 (GLUCOSIDE GLUCOHYDROLASE 2); hydrolase, hydrolyzing O-glycosyl compounds / thioglucosidase (TAIR:AT5G25980.2); Has 5680 Blast hits to 5443 proteins in 791 species: Archae - 90; Bacteria - 3100; Metazoa - 601; Fungi - 131; Plants - 842; Viruses - 0; Other Eukaryotes - 916 (source: NCBI BLink).  protein_id AT5G26000.1p  transcript_id AT5G26000.1  protein_id AT5G26000.1p  transcript_id AT5G26000.1  
At5g26010	chr5:009087181	0.0	C/9087181-9087372,9086533-9086805,9086109-9086226,9085795-9086018,9085512-9085700	AT5G26010.1  CDS  gene_syn T1N24.8, T1N24_8  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product catalytic/ protein serine/threonine phosphatase  note catalytic/ protein serine/threonine phosphatase; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C, N-terminal (InterPro:IPR014045), Protein phosphatase 2C (InterPro:IPR015655); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT4G32950.1); Has 4006 Blast hits to 4002 proteins in 234 species: Archae - 0; Bacteria - 19; Metazoa - 1200; Fungi - 509; Plants - 1345; Viruses - 5; Other Eukaryotes - 928 (source: NCBI BLink).  protein_id AT5G26010.1p  transcript_id AT5G26010.1  protein_id AT5G26010.1p  transcript_id AT5G26010.1  
At5g26015	chr5:009088340	0.0	W/9088340-9088809	AT5G26015.1  pseudogenic_transcript  pseudo  function Encodes a Protease inhibitor/seed storage/LTP family protein [pseudogene]  
At5g26020	chr5:009093595	0.0	C/9093595-9094877	AT5G26020.1  mRNA_TE_gene  pseudo  gene_syn T1N24.102, T1N24_102  note Transposable element gene, similar to Glutamic acid-rich protein precursor (GB:P13816)  
At5g26030	chr5:009096675	0.0	W/9096675-9096742,9096822-9097104,9097189-9097434,9097521-9097624,9097725-9097851,9097948-9098100,9098195-9098295,9098434-9098752	AT5G26030.1  CDS  gene_syn ATFC-I, FC-I, FC1, T1N24.17, T1N24_17, ferrochelatase 1  gene FC1  function encodes ferrochelatase I located in plastids. Involved in heme biosynthesis in non-photosynthetic tissues and induced by oxidative stress in photosynthetic tissues to supply heme for defensive hemoproteins  go_component mitochondrion|GO:0005739|16618929|IDA  go_component mitochondrion|GO:0005739|9753778|IDA  go_component chloroplast|GO:0009507|11602264|IDA  go_component chloroplast|GO:0009507|9753778|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process heme biosynthetic process|GO:0006783|17416636|IMP  go_process heme biosynthetic process|GO:0006783||ISS  go_process response to oxidative stress|GO:0006979|17416636|IEP  go_process tetrapyrrole biosynthetic process|GO:0033014|17416636|IMP  go_function ferrochelatase activity|GO:0004325|9753778|IGI  go_function ferrochelatase activity|GO:0004325||ISS  product FC1 (ferrochelatase 1); ferrochelatase  note ferrochelatase 1 (FC1); FUNCTIONS IN: ferrochelatase activity; INVOLVED IN: response to oxidative stress, heme biosynthetic process, tetrapyrrole biosynthetic process; LOCATED IN: mitochondrion, chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ferrochelatase (InterPro:IPR001015); BEST Arabidopsis thaliana protein match is: FC2 (FERROCHELATASE 2); ferrochelatase (TAIR:AT2G30390.1); Has 5427 Blast hits to 5425 proteins in 1202 species: Archae - 8; Bacteria - 2325; Metazoa - 147; Fungi - 92; Plants - 67; Viruses - 0; Other Eukaryotes - 2788 (source: NCBI BLink).  protein_id AT5G26030.1p  transcript_id AT5G26030.1  protein_id AT5G26030.1p  transcript_id AT5G26030.1  
At5g26030	chr5:009096675	0.0	W/9096675-9096742,9096822-9097104,9097189-9097434,9097521-9097624,9097725-9097851,9097948-9098100,9098195-9098295,9098434-9098752	AT5G26030.2  CDS  gene_syn ATFC-I, FC-I, FC1, T1N24.17, T1N24_17, ferrochelatase 1  gene FC1  function encodes ferrochelatase I located in plastids. Involved in heme biosynthesis in non-photosynthetic tissues and induced by oxidative stress in photosynthetic tissues to supply heme for defensive hemoproteins  go_component mitochondrion|GO:0005739|16618929|IDA  go_component mitochondrion|GO:0005739|9753778|IDA  go_component chloroplast|GO:0009507|11602264|IDA  go_component chloroplast|GO:0009507|9753778|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process heme biosynthetic process|GO:0006783|17416636|IMP  go_process heme biosynthetic process|GO:0006783||ISS  go_process response to oxidative stress|GO:0006979|17416636|IEP  go_process tetrapyrrole biosynthetic process|GO:0033014|17416636|IMP  go_function ferrochelatase activity|GO:0004325|9753778|IGI  go_function ferrochelatase activity|GO:0004325||ISS  product FC1 (ferrochelatase 1); ferrochelatase  note ferrochelatase 1 (FC1); FUNCTIONS IN: ferrochelatase activity; INVOLVED IN: response to oxidative stress, heme biosynthetic process, tetrapyrrole biosynthetic process; LOCATED IN: mitochondrion, chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ferrochelatase (InterPro:IPR001015); BEST Arabidopsis thaliana protein match is: FC2 (FERROCHELATASE 2); ferrochelatase (TAIR:AT2G30390.1); Has 5427 Blast hits to 5425 proteins in 1202 species: Archae - 8; Bacteria - 2325; Metazoa - 147; Fungi - 92; Plants - 67; Viruses - 0; Other Eukaryotes - 2788 (source: NCBI BLink).  protein_id AT5G26030.2p  transcript_id AT5G26030.2  protein_id AT5G26030.2p  transcript_id AT5G26030.2  
At5g26038	chr5:009098791	0.0	W/9098791-9098916	AT5G26038.1  miRNA  gene_syn MICRORNA860A, MIR860A  gene MIR860A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCAAUAGAUUGGACUAUGUAU  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR860A (MICRORNA860A); miRNA  transcript_id AT5G26038.1  
At5g26040	chr5:009101324	0.0	C/9101324-9101598,9101108-9101225,9100937-9100999,9100785-9100853,9100529-9100695,9100378-9100442,9100251-9100297,9100101-9100145,9099967-9100017,9099708-9099794,9099514-9099601,9099321-9099409	AT5G26040.2  CDS  gene_syn HDA2, HISTONE DEACETYLASE, T1N24.9, T1N24_9  gene HDA2  function Class III RPD3 type protein. Encodes HDA2, a member of the histone deacetylase family proteins.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function histone deacetylase activity|GO:0004407|12466527|ISS  go_function histone deacetylase activity|GO:0004407||ISS  product HDA2; histone deacetylase  note HDA2; FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: HD1 (HISTONE DEACETYLASE 1); basal transcription repressor/ histone deacetylase/ protein binding (TAIR:AT4G38130.2); Has 6449 Blast hits to 6352 proteins in 833 species: Archae - 116; Bacteria - 1958; Metazoa - 1076; Fungi - 326; Plants - 244; Viruses - 0; Other Eukaryotes - 2729 (source: NCBI BLink).  protein_id AT5G26040.2p  transcript_id AT5G26040.2  protein_id AT5G26040.2p  transcript_id AT5G26040.2  
At5g26040	chr5:009101324	0.0	C/9101324-9101598,9101108-9101225,9100937-9100999,9100785-9100853,9100599-9100695,9100378-9100428,9100251-9100297,9100101-9100145,9099967-9100017,9099708-9099794,9099514-9099601,9099321-9099409	AT5G26040.1  CDS  gene_syn HDA2, HISTONE DEACETYLASE, T1N24.9, T1N24_9  gene HDA2  function Class III RPD3 type protein. Encodes HDA2, a member of the histone deacetylase family proteins.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function histone deacetylase activity|GO:0004407|12466527|ISS  go_function histone deacetylase activity|GO:0004407||ISS  product HDA2; histone deacetylase  note HDA2; FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: HDA18; H3/H4 histone acetyltransferase/ histone deacetylase (TAIR:AT5G61070.1); Has 4061 Blast hits to 4042 proteins in 664 species: Archae - 82; Bacteria - 1112; Metazoa - 620; Fungi - 183; Plants - 179; Viruses - 0; Other Eukaryotes - 1885 (source: NCBI BLink).  protein_id AT5G26040.1p  transcript_id AT5G26040.1  protein_id AT5G26040.1p  transcript_id AT5G26040.1  
At5g26050	chr5:009103395	0.0	C/9103395-9103877	AT5G26050.1  CDS  gene_syn T1N24.10, T1N24_10  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11820.1); Has 12 Blast hits to 11 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G26050.1p  transcript_id AT5G26050.1  protein_id AT5G26050.1p  transcript_id AT5G26050.1  
At5g26060	chr5:009105013	0.0	C/9105013-9105477	AT5G26060.1  CDS  gene_syn T1N24.103, T1N24_103  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product S1 self-incompatibility protein-related  note S1 self-incompatibility protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11820.1); Has 20 Blast hits to 19 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G26060.1p  transcript_id AT5G26060.1  protein_id AT5G26060.1p  transcript_id AT5G26060.1  
At5g26070	chr5:009106341	0.0	W/9106341-9106649	AT5G26070.1  CDS  gene_syn T1N24.104, T1N24_104  function Encodes a protein with 23.5% proline residues and proline-rich extensin domains, INTERPRO:IPR002965; similar to root nodule extensin (Pisum sativum) gi:15021750/gb:AAK77902; Common family members: At5g19800, At5g57070, At1g72790 (Arabidopsis thaliana)  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT5G26080.1); Has 1630 Blast hits to 815 proteins in 165 species: Archae - 6; Bacteria - 68; Metazoa - 131; Fungi - 100; Plants - 871; Viruses - 253; Other Eukaryotes - 201 (source: NCBI BLink).  protein_id AT5G26070.1p  transcript_id AT5G26070.1  protein_id AT5G26070.1p  transcript_id AT5G26070.1  
At5g26080	chr5:009107997	0.0	W/9107997-9108422	AT5G26080.1  CDS  gene_syn T1N24.105, T1N24_105  go_component endomembrane system|GO:0012505||IEA  product proline-rich family protein  note proline-rich family protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G26070.1); Has 57350 Blast hits to 23522 proteins in 1200 species: Archae - 121; Bacteria - 8150; Metazoa - 21786; Fungi - 6108; Plants - 11465; Viruses - 2239; Other Eukaryotes - 7481 (source: NCBI BLink).  protein_id AT5G26080.1p  transcript_id AT5G26080.1  protein_id AT5G26080.1p  transcript_id AT5G26080.1  
At5g26090	chr5:009113040	0.0	C/9113040-9113235,9111153-9111641,9109026-9109546	AT5G26090.1  CDS  gene_syn T1N24.11, T1N24_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11830.1); Has 30 Blast hits to 20 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G26090.1p  transcript_id AT5G26090.1  protein_id AT5G26090.1p  transcript_id AT5G26090.1  
At5g26100	chr5:009117290	0.0	C/9117290-9117817	AT5G26100.1  CDS  gene_syn T1N24.107, T1N24_107  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44170.1); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G26100.1p  transcript_id AT5G26100.1  protein_id AT5G26100.1p  transcript_id AT5G26100.1  
At5g26110	chr5:009118724	0.0	C/9118724-9118990,9118530-9118643,9118361-9118433,9118239-9118276	AT5G26110.2  CDS  gene_syn T1N24.12, T1N24_12  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  product ATP binding / protein kinase  note ATP binding / protein kinase; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Protein kinase-like (InterPro:IPR011009); Has 902 Blast hits to 901 proteins in 303 species: Archae - 146; Bacteria - 249; Metazoa - 167; Fungi - 110; Plants - 23; Viruses - 0; Other Eukaryotes - 207 (source: NCBI BLink).  protein_id AT5G26110.2p  transcript_id AT5G26110.2  protein_id AT5G26110.2p  transcript_id AT5G26110.2  
At5g26110	chr5:009119290	0.0	C/9119290-9119352,9119105-9119218,9118724-9119002,9118530-9118643,9118361-9118433,9118239-9118276	AT5G26110.1  CDS  gene_syn T1N24.12, T1N24_12  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  product ATP binding / catalytic/ protein kinase  note ATP binding / catalytic/ protein kinase; FUNCTIONS IN: protein kinase activity, catalytic activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), RIO-like kinase (InterPro:IPR018934), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G08120.1); Has 1182 Blast hits to 1178 proteins in 337 species: Archae - 148; Bacteria - 370; Metazoa - 229; Fungi - 137; Plants - 43; Viruses - 0; Other Eukaryotes - 255 (source: NCBI BLink).  protein_id AT5G26110.1p  transcript_id AT5G26110.1  protein_id AT5G26110.1p  transcript_id AT5G26110.1  
At5g26114	chr5:009120688	0.0	C/9120688-9120960	AT5G26114.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G26114.1p  transcript_id AT5G26114.1  protein_id AT5G26114.1p  transcript_id AT5G26114.1  
At5g26120	chr5:009125208	0.0	C/9125208-9125399,9124920-9124974,9124639-9124841,9124433-9124554,9124203-9124356,9124044-9124113,9123799-9123944,9123670-9123715,9123546-9123598,9123306-9123450,9123093-9123211,9122941-9123012,9122727-9122830,9122587-9122643,9122306-9122495,9122093-9122230,9121835-9121993	AT5G26120.1  CDS  gene_syn ALPHA-L-ARABINOFURANOSIDASE 2, ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 2, ASD2, ATASD2, T1N24.13, T1N24_13  gene ASD2  go_component endomembrane system|GO:0012505||IEA  go_process L-arabinose metabolic process|GO:0046373||IEA  go_function alpha-N-arabinofuranosidase activity|GO:0046556||IEA  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product ASD2 (ALPHA-L-ARABINOFURANOSIDASE 2); alpha-N-arabinofuranosidase/ hydrolase, acting on glycosyl bonds  note ALPHA-L-ARABINOFURANOSIDASE 2 (ASD2); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, alpha-N-arabinofuranosidase activity; INVOLVED IN: L-arabinose metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: sepal, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Alpha-L-arabinofuranosidase, C-terminal (InterPro:IPR010720), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: ASD1 (ALPHA-L-ARABINOFURANOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, acting on glycosyl bonds / xylan 1,4-beta-xylosidase (TAIR:AT3G10740.1); Has 718 Blast hits to 714 proteins in 194 species: Archae - 0; Bacteria - 501; Metazoa - 0; Fungi - 98; Plants - 88; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT5G26120.1p  transcript_id AT5G26120.1  protein_id AT5G26120.1p  transcript_id AT5G26120.1  
At5g26130	chr5:009128110	0.0	C/9128110-9128610	AT5G26130.1  CDS  gene_syn T1N24.14, T1N24_14  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_component extracellular region|GO:0005576||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related, conserved site (InterPro:IPR018244), Allergen V5/Tpx-1 related (InterPro:IPR001283), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: pathogenesis-related protein, putative (TAIR:AT4G33710.1); Has 2282 Blast hits to 2195 proteins in 288 species: Archae - 0; Bacteria - 49; Metazoa - 1341; Fungi - 231; Plants - 611; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT5G26130.1p  transcript_id AT5G26130.1  protein_id AT5G26130.1p  transcript_id AT5G26130.1  
At5g26140	chr5:009130796	0.0	W/9130796-9130807,9130891-9130997,9131152-9131221,9131315-9131458,9131538-9131636	AT5G26140.1  CDS  gene_syn T1N24.16, T1N24_16  go_process lysine biosynthetic process via diaminopimelate|GO:0009089||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product lysine decarboxylase family protein  note lysine decarboxylase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lysine biosynthetic process via diaminopimelate; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: protein homodimerization (TAIR:AT5G11950.2); Has 1823 Blast hits to 1823 proteins in 566 species: Archae - 6; Bacteria - 1027; Metazoa - 8; Fungi - 77; Plants - 168; Viruses - 0; Other Eukaryotes - 537 (source: NCBI BLink).  protein_id AT5G26140.1p  transcript_id AT5G26140.1  protein_id AT5G26140.1p  transcript_id AT5G26140.1  
At5g26146	chr5:009135913	0.0	W/9135913-9138264	AT5G26146.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT5G26150  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G26146.1  
At5g26147	chr5:009136126	0.0	W/9136126-9136215	AT5G26147.1  miRNA  gene_syn MICRORNA 156F, MIR156F  gene MIR156F  function Encodes a microRNA that targets several SPL family members, including SPL3,4, and 5. By regulating the expression of SPL3 (and probably also SPL4 and SPL5), this microRNA regulates vegetative phase change. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGACAGAAGAGAGUGAGCAC  go_component cellular_component|GO:0005575||ND  go_process gene silencing by miRNA|GO:0035195|15200956|TAS  go_function molecular_function|GO:0003674||ND  product MIR156F (MICRORNA 156F); miRNA  transcript_id AT5G26147.1  
At5g26150	chr5:009139925	0.0	C/9139925-9140099,9139741-9139814,9139317-9139639,9138939-9139230,9138748-9138849,9138253-9138681,9137461-9138177	AT5G26150.1  CDS  gene_syn T1N24.15, T1N24_15  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: kinase (TAIR:AT5G12000.1); Has 86665 Blast hits to 85340 proteins in 3222 species: Archae - 62; Bacteria - 8470; Metazoa - 37892; Fungi - 6644; Plants - 18751; Viruses - 238; Other Eukaryotes - 14608 (source: NCBI BLink).  protein_id AT5G26150.1p  transcript_id AT5G26150.1  protein_id AT5G26150.1p  transcript_id AT5G26150.1  
At5g26160	chr5:009143269	0.0	W/9143269-9145322,9145436-9146312	AT5G26160.1  CDS  gene_syn T19G15.10, T19G15_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G20610.1); Has 138 Blast hits to 117 proteins in 36 species: Archae - 0; Bacteria - 14; Metazoa - 25; Fungi - 15; Plants - 62; Viruses - 2; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT5G26160.1p  transcript_id AT5G26160.1  protein_id AT5G26160.1p  transcript_id AT5G26160.1  
At5g26170	chr5:009147870	0.0	C/9147870-9148128,9147553-9147691,9147176-9147299	AT5G26170.1  CDS  gene_syn ATWRKY50, T19G15.20, T19G15_20, WRKY50  gene WRKY50  function member of WRKY Transcription Factor; Group II-c  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY50; transcription factor  note WRKY50; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY51; transcription factor (TAIR:AT5G64810.1); Has 2025 Blast hits to 1735 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2011; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT5G26170.1p  transcript_id AT5G26170.1  protein_id AT5G26170.1p  transcript_id AT5G26170.1  
At5g26180	chr5:009149253	0.0	W/9149253-9149691,9149764-9149822,9149902-9149952,9150059-9150191,9150283-9150368,9150644-9150742,9150820-9150873,9151021-9151165,9151330-9151391,9151674-9151761,9151834-9151914,9152109-9152270,9152351-9152595	AT5G26180.1  CDS  gene_syn T19G15.30, T19G15_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NOL1/NOP2/sun family protein  note NOL1/NOP2/sun family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678); BEST Arabidopsis thaliana protein match is: nucleolar protein, putative (TAIR:AT5G55920.1); Has 5353 Blast hits to 5300 proteins in 1252 species: Archae - 211; Bacteria - 3160; Metazoa - 580; Fungi - 261; Plants - 117; Viruses - 1; Other Eukaryotes - 1023 (source: NCBI BLink).  protein_id AT5G26180.1p  transcript_id AT5G26180.1  protein_id AT5G26180.1p  transcript_id AT5G26180.1  
At5g26180	chr5:009149253	0.0	W/9149253-9149691,9149764-9149822,9149902-9149952,9150059-9150191,9150283-9150368,9150644-9150742,9150820-9150873,9151021-9151165,9151330-9151391,9151674-9151761,9151834-9151914,9152109-9152270,9152351-9152595	AT5G26180.2  CDS  gene_syn T19G15.30, T19G15_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NOL1/NOP2/sun family protein  note NOL1/NOP2/sun family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678); BEST Arabidopsis thaliana protein match is: nucleolar protein, putative (TAIR:AT5G55920.1); Has 5353 Blast hits to 5300 proteins in 1252 species: Archae - 211; Bacteria - 3160; Metazoa - 580; Fungi - 261; Plants - 117; Viruses - 1; Other Eukaryotes - 1023 (source: NCBI BLink).  protein_id AT5G26180.2p  transcript_id AT5G26180.2  protein_id AT5G26180.2p  transcript_id AT5G26180.2  
At5g26190	chr5:009153628	0.0	C/9153628-9155298	AT5G26190.1  CDS  gene_syn T19G15.40, T19G15_40  go_component intracellular|GO:0005622||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, RanBP2-type (InterPro:IPR001876), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT5G43030.1); Has 1129 Blast hits to 481 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1096; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT5G26190.1p  transcript_id AT5G26190.1  protein_id AT5G26190.1p  transcript_id AT5G26190.1  
At5g26200	chr5:009157268	0.0	W/9157268-9158296	AT5G26200.1  CDS  gene_syn F9D12.12  go_component mitochondrial inner membrane|GO:0005743||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function binding|GO:0005488||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: mitochondrial substrate carrier family protein (TAIR:AT1G72820.1); Has 12703 Blast hits to 8492 proteins in 311 species: Archae - 0; Bacteria - 0; Metazoa - 6193; Fungi - 3428; Plants - 1980; Viruses - 0; Other Eukaryotes - 1102 (source: NCBI BLink).  protein_id AT5G26200.1p  transcript_id AT5G26200.1  protein_id AT5G26200.1p  transcript_id AT5G26200.1  
At5g26210	chr5:009160125	0.0	C/9160125-9160221,9160000-9160032,9159208-9159436,9158924-9159056,9158566-9158841	AT5G26210.1  CDS  gene_syn AL4, ALFIN-LIKE 4, T19G15.60, T19G15_60  gene AL4  function AL4 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.  go_component nucleus|GO:0005634|19154204|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function methylated histone residue binding|GO:0035064|19154204|IDA  product AL4 (ALFIN-LIKE 4); DNA binding / methylated histone residue binding  note ALFIN-LIKE 4 (AL4); FUNCTIONS IN: methylated histone residue binding, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: AL3 (ALFIN-LIKE 3); DNA binding / methylated histone residue binding (TAIR:AT3G42790.1); Has 1345 Blast hits to 1257 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 709; Fungi - 230; Plants - 304; Viruses - 5; Other Eukaryotes - 97 (source: NCBI BLink).  protein_id AT5G26210.1p  transcript_id AT5G26210.1  protein_id AT5G26210.1p  transcript_id AT5G26210.1  
At5g26220	chr5:009164505	0.0	C/9164505-9164613,9164339-9164415,9163951-9164007,9163791-9163847,9163658-9163698,9163425-9163576,9163178-9163335	AT5G26220.1  CDS  gene_syn T19G15.70, T19G15_70  go_component cellular_component|GO:0005575||ND  go_process response to lead ion|GO:0010288|15708574|IEP  go_process response to cadmium ion|GO:0046686|15708574|IEP  go_function molecular_function|GO:0003674||ND  product ChaC-like family protein  note ChaC-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to lead ion, response to cadmium ion; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ChaC-like protein (InterPro:IPR006840); BEST Arabidopsis thaliana protein match is: ChaC-like family protein (TAIR:AT4G31290.1); Has 1085 Blast hits to 1083 proteins in 378 species: Archae - 0; Bacteria - 542; Metazoa - 194; Fungi - 85; Plants - 75; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).  protein_id AT5G26220.1p  transcript_id AT5G26220.1  protein_id AT5G26220.1p  transcript_id AT5G26220.1  
At5g26230	chr5:009173517	0.0	C/9173517-9174542	AT5G26230.1  CDS  gene_syn F9D12.20  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 5441 Blast hits to 1635 proteins in 226 species: Archae - 0; Bacteria - 771; Metazoa - 1162; Fungi - 799; Plants - 124; Viruses - 45; Other Eukaryotes - 2540 (source: NCBI BLink).  protein_id AT5G26230.1p  transcript_id AT5G26230.1  protein_id AT5G26230.1p  transcript_id AT5G26230.1  
At5g26233	chr5:009179752	0.0	C/9179752-9180539	AT5G26233.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 6.2e-18 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At5g26236	chr5:009183055	0.0	W/9183055-9187480	AT5G26236.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 3.5e-307 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At5g26240	chr5:009189622	0.0	W/9189622-9189877,9189972-9190193,9190279-9190325,9190420-9190518,9190598-9190672,9190785-9190873,9191091-9191231,9191318-9191388,9191469-9191548,9191664-9191813,9192015-9192074,9192184-9192258,9192472-9192623,9192730-9192865,9192942-9193073,9193173-9193250,9193337-9193392,9193466-9193546,9193636-9193792,9193875-9193976,9194057-9194106,9194278-9194347	AT5G26240.1  CDS  gene_syn ATCLC-D, CHLORIDE CHANNEL D, CLC-D, T19G15.90, T19G15_90  gene CLC-D  function member of Anion channel protein family  go_component intracellular|GO:0005622|8969232|IC  go_component trans-Golgi network|GO:0005802|17376158|IDA  go_process unidimensional cell growth|GO:0009826|17376158|IMP  go_process response to metal ion|GO:0010038|8969232|IGI  go_process cellular anion homeostasis|GO:0030002|17376158|IMP  go_function voltage-gated chloride channel activity|GO:0005247|8969232|IGI  go_function anion channel activity|GO:0005253||ISS  product CLC-D (CHLORIDE CHANNEL D); anion channel/ voltage-gated chloride channel  note CHLORIDE CHANNEL D (CLC-D); FUNCTIONS IN: anion channel activity, voltage-gated chloride channel activity; INVOLVED IN: cellular anion homeostasis, response to metal ion, unidimensional cell growth; LOCATED IN: trans-Golgi network, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chloride channel, core (InterPro:IPR014743), Chloride channel, voltage gated (InterPro:IPR001807), Chloride channel plant CLC (InterPro:IPR002251), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CLC-C (CHLORIDE CHANNEL C); anion channel/ voltage-gated chloride channel (TAIR:AT5G49890.1); Has 5031 Blast hits to 4226 proteins in 976 species: Archae - 92; Bacteria - 2887; Metazoa - 948; Fungi - 219; Plants - 192; Viruses - 0; Other Eukaryotes - 693 (source: NCBI BLink).  protein_id AT5G26240.1p  transcript_id AT5G26240.1  protein_id AT5G26240.1p  transcript_id AT5G26240.1  
At5g26250	chr5:009196758	0.0	W/9196758-9196887,9197028-9197347,9197538-9198164,9198235-9198681	AT5G26250.1  CDS  gene_syn T19G15.100, T19G15_100  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product sugar transporter, putative  note sugar transporter, putative; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: endomembrane system, integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: STP6 (SUGAR TRANSPORTER 6); carbohydrate transmembrane transporter/ monosaccharide transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT3G05960.1); Has 16246 Blast hits to 15932 proteins in 1128 species: Archae - 244; Bacteria - 6181; Metazoa - 3021; Fungi - 4354; Plants - 1468; Viruses - 0; Other Eukaryotes - 978 (source: NCBI BLink).  protein_id AT5G26250.1p  transcript_id AT5G26250.1  protein_id AT5G26250.1p  transcript_id AT5G26250.1  
At5g26260	chr5:009200492	0.0	W/9200492-9200578,9200657-9200714,9200799-9200928,9201027-9201196,9201328-9201607,9201721-9201887,9201990-9202153	AT5G26260.1  CDS  gene_syn T19G15.110, T19G15_110  go_component chloroplast|GO:0009507|15028209|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: hypocotyl, root, callus; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT5G26280.1); Has 385 Blast hits to 287 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 14; Plants - 353; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT5G26260.1p  transcript_id AT5G26260.1  protein_id AT5G26260.1p  transcript_id AT5G26260.1  
At5g26262	chr5:009203285	0.0	C/9203285-9203392	AT5G26262.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G26262.1p  transcript_id AT5G26262.1  protein_id AT5G26262.1p  transcript_id AT5G26262.1  
At5g26270	chr5:009206508	0.0	W/9206508-9207008,9207096-9207512	AT5G26270.1  CDS  gene_syn T19G15.120, T19G15_120  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 2 Blast hits to 2 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G26270.1p  transcript_id AT5G26270.1  protein_id AT5G26270.1p  transcript_id AT5G26270.1  
At5g26280	chr5:009208724	0.0	W/9208724-9208810,9208893-9208950,9209058-9209184,9209270-9209439,9209592-9209871,9209965-9210131,9210240-9210403	AT5G26280.1  CDS  gene_syn F9D12.7  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT5G26300.1); Has 324 Blast hits to 260 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 16; Plants - 293; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G26280.1p  transcript_id AT5G26280.1  protein_id AT5G26280.1p  transcript_id AT5G26280.1  
At5g26280	chr5:009208724	0.0	W/9208724-9208810,9208893-9208950,9209058-9209184,9209339-9209439,9209592-9209871,9209965-9210131,9210240-9210403	AT5G26280.2  CDS  gene_syn F9D12.7  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT5G26300.1); Has 235 Blast hits to 194 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 226; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G26280.2p  transcript_id AT5G26280.2  protein_id AT5G26280.2p  transcript_id AT5G26280.2  
At5g26283	chr5:009214236	0.0	C/9214236-9217143	AT5G26283.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 5.7e-145 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g26286	chr5:009220057	0.0	W/9220057-9221658	AT5G26286.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At5g26290	chr5:009226079	0.0	W/9226079-9226165,9226277-9226313,9226402-9226528,9226620-9226789,9227078-9227348,9227449-9227597,9227713-9227873	AT5G26290.1  CDS  gene_syn F9D12.6, F9D12_6  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT5G26280.1); Has 263 Blast hits to 213 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 250; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT5G26290.1p  transcript_id AT5G26290.1  protein_id AT5G26290.1p  transcript_id AT5G26290.1  
At5g26300	chr5:009229326	0.0	W/9229326-9229412,9229501-9229558,9229667-9229793,9229886-9230055,9230197-9230473,9230596-9230762,9230870-9231033	AT5G26300.1  CDS  gene_syn F9D12.5, F9D12_5  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT5G26280.1); Has 285 Blast hits to 237 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 10; Plants - 269; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G26300.1p  transcript_id AT5G26300.1  protein_id AT5G26300.1p  transcript_id AT5G26300.1  
At5g26310	chr5:009234739	0.0	W/9234739-9236184	AT5G26310.1  CDS  gene_syn F9D12.4, F9D12_4, UGT72E3  gene UGT72E3  function UGT72E3 is an UDPG:coniferyl alcohol glucosyltransferase which glucosylates sinapyl- and coniferyl alcohol as well as sinapic acid. The enzyme is thought to be involved in lignin- and phenylpropanoid metabolism. A knockdown mutant line (72E3KD) was obtained using RNAi silencing. No reduction in coniferyl alcohol 4-<i>O</i>-glucoside and sinapyl alcohol 4-<i>O</i>-glucoside was detected in this line compared to wildtype, in contrast with the knockdown line constructed for UGT72E2 displayed a twofold reduction in the these phenylpropanoid 4-<i>O</i>-glucosides.  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function coniferyl-alcohol glucosyltransferase activity|GO:0047209|15907484|IDA  product UGT72E3; UDP-glycosyltransferase/ coniferyl-alcohol glucosyltransferase/ transferase, transferring glycosyl groups  note UGT72E3; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups, coniferyl-alcohol glucosyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, seedling growth; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT72E2; UDP-glycosyltransferase/ coniferyl-alcohol glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT5G66690.1); Has 4951 Blast hits to 4925 proteins in 314 species: Archae - 0; Bacteria - 117; Metazoa - 2054; Fungi - 17; Plants - 2665; Viruses - 70; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT5G26310.1p  transcript_id AT5G26310.1  protein_id AT5G26310.1p  transcript_id AT5G26310.1  
At5g26320	chr5:009238310	0.0	W/9238310-9238396,9239766-9239823,9239896-9240022,9240109-9240284,9240417-9240696,9240802-9240968,9241073-9241236	AT5G26320.1  CDS  gene_syn F9D12.3, F9D12_3  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT5G26280.1); Has 334 Blast hits to 247 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 317; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT5G26320.1p  transcript_id AT5G26320.1  protein_id AT5G26320.1p  transcript_id AT5G26320.1  
At5g26330	chr5:009242470	0.0	C/9242470-9242635,9241614-9242011	AT5G26330.1  CDS  gene_syn F9D12.16, F9D12_16  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function copper ion binding|GO:0005507||ISS  product plastocyanin-like domain-containing protein / mavicyanin, putative  note plastocyanin-like domain-containing protein / mavicyanin, putative; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: plastocyanin-like domain-containing protein (TAIR:AT2G31050.1); Has 840 Blast hits to 831 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 838; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G26330.1p  transcript_id AT5G26330.1  protein_id AT5G26330.1p  transcript_id AT5G26330.1  
At5g26340	chr5:009246862	0.0	C/9246862-9246994,9245851-9246301,9244930-9245221,9243851-9244555	AT5G26340.1  CDS  gene_syn F9D12.17, F9D12_17, MSS1, STP13, sugar transport protein 13  gene MSS1  function Encodes a protein with high affinity, hexose-specific/H+ symporter activity. The activity of the transporter appears to be negatively regulated by phosphorylation. Importantly, microarray analysis, as well as the study of the expression of this gene in mutants involved in programmed cell death (PCD) demonstrated a tight correlation between this gene s expression and PCD.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020||ISS  go_process apoptosis|GO:0006915|16616142|IMP  go_process response to salt stress|GO:0009651|11351099|IEP  go_process phosphorylation|GO:0016310|16616142|IDA  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function high-affinity hydrogen:glucose symporter activity|GO:0005358|16616142|IDA  go_function hexose:hydrogen symporter activity|GO:0009679|16616142|IDA  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product MSS1; carbohydrate transmembrane transporter/ hexose:hydrogen symporter/ high-affinity hydrogen:glucose symporter/ sugar:hydrogen symporter  note MSS1; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, high-affinity hydrogen:glucose symporter activity, hexose:hydrogen symporter activity; INVOLVED IN: response to salt stress, apoptosis, phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter, putative (TAIR:AT4G02050.1); Has 15729 Blast hits to 15422 proteins in 1058 species: Archae - 183; Bacteria - 5792; Metazoa - 3143; Fungi - 4390; Plants - 1280; Viruses - 0; Other Eukaryotes - 941 (source: NCBI BLink).  protein_id AT5G26340.1p  transcript_id AT5G26340.1  protein_id AT5G26340.1p  transcript_id AT5G26340.1  
At5g26345	chr5:009249457	0.0	W/9249457-9252813	AT5G26345.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 1.9e-43 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At5g26350	chr5:009253108	0.0	C/9253108-9253637	AT5G26350.1  mRNA_TE_gene  pseudo  gene_syn F9D12.102, F9D12_102  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G33393.1); similar to hypothetical protein PFL0315c [Plasmodium falciparum 3D7] (GB:NP_701428.1)  
At5g26360	chr5:009258867	0.0	C/9258867-9258891,9258711-9258772,9258547-9258619,9258179-9258246,9258029-9258098,9257765-9257833,9257612-9257683,9257423-9257496,9256469-9257131,9256267-9256392,9256016-9256120,9255840-9255914,9255561-9255746	AT5G26360.1  CDS  gene_syn F9D12.18, F9D12_18  go_process protein folding|GO:0006457||IEA  go_process cellular protein metabolic process|GO:0044267||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function unfolded protein binding|GO:0051082||IEA  product chaperonin, putative  note chaperonin, putative; FUNCTIONS IN: unfolded protein binding, protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, gamma subunit (InterPro:IPR012719), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: chaperonin, putative (TAIR:AT3G11830.1); Has 12411 Blast hits to 12269 proteins in 2241 species: Archae - 394; Bacteria - 5329; Metazoa - 1841; Fungi - 951; Plants - 480; Viruses - 2; Other Eukaryotes - 3414 (source: NCBI BLink).  protein_id AT5G26360.1p  transcript_id AT5G26360.1  protein_id AT5G26360.1p  transcript_id AT5G26360.1  
At5g26570	chr5:009261580	0.0	W/9261580-9261758,9261859-9262474,9262581-9262667,9262771-9262902,9263019-9263144,9263221-9263399,9263495-9263579,9263950-9264099,9264173-9264225,9264336-9264544,9264673-9264791,9264954-9265024,9265181-9265298,9265658-9265744,9265819-9265905,9265998-9266074,9266154-9266352,9266429-9266540,9266622-9267526	AT5G26570.1  CDS  gene_syn ATGWD3, F9D12.1, F9D12_1, OK1, PHOSPHOGLUCAN WATER DIKINASE, PWD  gene ATGWD3  function chloroplastidic phosphoglucan, water dikinase (PWD) which is required for normal degradation of leaf starch in Arabidopsis. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C3 position.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast|GO:0009507|15686522|IDA  go_component plastid|GO:0009536|15618411|IDA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_process starch metabolic process|GO:0005982|15686522|IMP  go_process starch catabolic process|GO:0005983|15618411|TAS  go_process protein amino acid autophosphorylation|GO:0046777|15686522|IDA  go_function catalytic activity|GO:0003824||ISS  go_function carbohydrate kinase activity|GO:0019200|15686522|IDA  go_function phosphoglucan, water dikinase activity|GO:0051752|15618411|IDA  go_function phosphoglucan, water dikinase activity|GO:0051752|15686522|ISS  product ATGWD3; carbohydrate kinase/ catalytic/ phosphoglucan, water dikinase  note ATGWD3; FUNCTIONS IN: carbohydrate kinase activity, phosphoglucan, water dikinase activity, catalytic activity; INVOLVED IN: protein amino acid autophosphorylation, carbohydrate metabolic process, starch metabolic process, starch catabolic process; LOCATED IN: chloroplast stroma, chloroplast, plastid; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate phosphate dikinase, PEP/pyruvate-binding (InterPro:IPR002192), Immunoglobulin-like fold (InterPro:IPR013783), Carbohydrate-binding-like fold (InterPro:IPR013784), ATP-grasp fold, subdomain 1 (InterPro:IPR013815), Glycoside hydrolase, carbohydrate-binding (InterPro:IPR002044); BEST Arabidopsis thaliana protein match is: PWD (PHOSPHOGLUCAN, WATER DIKINASE); ATP binding / kinase (TAIR:AT4G24450.1); Has 2281 Blast hits to 2276 proteins in 803 species: Archae - 146; Bacteria - 1595; Metazoa - 23; Fungi - 152; Plants - 124; Viruses - 0; Other Eukaryotes - 241 (source: NCBI BLink).  protein_id AT5G26570.1p  transcript_id AT5G26570.1  protein_id AT5G26570.1p  transcript_id AT5G26570.1  
At5g26570	chr5:009261580	0.0	W/9261580-9261758,9261859-9262474,9262581-9262667,9262771-9262902,9263019-9263144,9263221-9263399,9263495-9263579,9263950-9264099,9264173-9264225,9264336-9264544,9264673-9264791,9264954-9265024,9265181-9265298,9265658-9265744,9265819-9265905,9265998-9266074,9266154-9266352,9266440-9266463	AT5G26570.2  CDS  gene_syn ATGWD3, F9D12.1, F9D12_1, OK1, PHOSPHOGLUCAN WATER DIKINASE, PWD  gene ATGWD3  function chloroplastidic phosphoglucan, water dikinase (PWD) which is required for normal degradation of leaf starch in Arabidopsis. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C3 position.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|15686522|IDA  go_component plastid|GO:0009536|15618411|IDA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_process starch metabolic process|GO:0005982|15686522|IMP  go_process starch catabolic process|GO:0005983|15618411|TAS  go_process protein amino acid autophosphorylation|GO:0046777|15686522|IDA  go_function catalytic activity|GO:0003824||ISS  go_function carbohydrate kinase activity|GO:0019200|15686522|IDA  go_function phosphoglucan, water dikinase activity|GO:0051752|15618411|IDA  go_function phosphoglucan, water dikinase activity|GO:0051752|15686522|ISS  product ATGWD3; carbohydrate kinase/ catalytic/ phosphoglucan, water dikinase  note PHOSPHOGLUCAN WATER DIKINASE (PWD); FUNCTIONS IN: carbohydrate kinase activity, phosphoglucan, water dikinase activity, catalytic activity; INVOLVED IN: protein amino acid autophosphorylation, carbohydrate metabolic process, starch metabolic process, starch catabolic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin-like fold (InterPro:IPR013783), Carbohydrate-binding-like fold (InterPro:IPR013784), Glycoside hydrolase, carbohydrate-binding (InterPro:IPR002044); BEST Arabidopsis thaliana protein match is: SEX1 (STARCH EXCESS 1); alpha-glucan, water dikinase (TAIR:AT1G10760.1); Has 481 Blast hits to 478 proteins in 119 species: Archae - 1; Bacteria - 162; Metazoa - 15; Fungi - 141; Plants - 115; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT5G26570.2p  transcript_id AT5G26570.2  protein_id AT5G26570.2p  transcript_id AT5G26570.2  
At5g26594	chr5:009269282	0.0	W/9269282-9269518,9270072-9270254	AT5G26594.1  CDS  gene_syn ARR24, Arabidopsis response regulator 24  gene ARR24  function Encodes an atypical subtype of the ARR (Arabidopsis response regulator) protein family . It appears to be expressed in floral buds, mature flowers, and pollen. But, unlike the related ARR22 protein, it does not appear to be expressed at the seed:funiculus junction.  go_process two-component signal transduction system (phosphorelay)|GO:0000160||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function two-component response regulator activity|GO:0000156||IEA  go_component cellular_component|GO:0005575||ND  go_function two-component response regulator activity|GO:0000156||ISS  product ARR24 (Arabidopsis response regulator 24); two-component response regulator  note Arabidopsis response regulator 24 (ARR24); FUNCTIONS IN: two-component response regulator activity; INVOLVED IN: regulation of transcription, DNA-dependent, two-component signal transduction system (phosphorelay); LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, fruit, floral bud, flower; CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver region (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: ARR22 (ARABIDOPSIS RESPONSE REGULATOR 22); phosphohistidine phosphatase/ transcription regulator/ two-component response regulator (TAIR:AT3G04280.3); Has 27761 Blast hits to 27295 proteins in 1529 species: Archae - 176; Bacteria - 23559; Metazoa - 10; Fungi - 941; Plants - 347; Viruses - 10; Other Eukaryotes - 2718 (source: NCBI BLink).  protein_id AT5G26594.1p  transcript_id AT5G26594.1  protein_id AT5G26594.1p  transcript_id AT5G26594.1  
At5g26618	chr5:009272491	0.0	C/9272491-9274179	AT5G26618.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 6.3e-33 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At5g26642	chr5:009274544	0.0	W/9274544-9275779	AT5G26642.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G36905.1); similar to RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H [Medicago truncatula] (GB:ABE88250.1); similar to RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H [Medicago truncatula] (GB:ABE81893.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)  
At5g26667	chr5:009276659	0.0	W/9276659-9276719,9276831-9276948,9277070-9277226,9277309-9277389,9277494-9277601,9277687-9277758,9278080-9278091	AT5G26667.2  CDS  gene_syn CMP/UMP KINASE, PYR6  gene PYR6  function encodes a uridine 5 -monophosphate (UMP)/cytidine 5 -monophosphate (CMP) kinase.  go_component cellular_component|GO:0005575||ND  go_process pyrimidine ribonucleoside monophosphate metabolic process|GO:0009173|9576794|TAS  go_function cytidylate kinase activity|GO:0004127|9576794|IDA  go_function uridylate kinase activity|GO:0009041|9576794|IDA  go_function uridylate kinase activity|GO:0009041||ISS  product PYR6; cytidylate kinase/ uridylate kinase  note PYR6; FUNCTIONS IN: uridylate kinase activity, cytidylate kinase activity; INVOLVED IN: pyrimidine ribonucleoside monophosphate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, cultured cell; CONTAINS InterPro DOMAIN/s: UMP-CMP kinase (InterPro:IPR006266), Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: uridylate kinase, putative / uridine monophosphate kinase, putative / UMP kinase, putative (TAIR:AT3G60180.2); Has 8588 Blast hits to 8435 proteins in 1850 species: Archae - 72; Bacteria - 4362; Metazoa - 1035; Fungi - 301; Plants - 245; Viruses - 0; Other Eukaryotes - 2573 (source: NCBI BLink).  protein_id AT5G26667.2p  transcript_id AT5G26667.2  protein_id AT5G26667.2p  transcript_id AT5G26667.2  
At5g26667	chr5:009276659	0.0	W/9276659-9276719,9276831-9276948,9277070-9277226,9277309-9277389,9277494-9277601,9277687-9277758,9278080-9278091	AT5G26667.3  CDS  gene_syn CMP/UMP KINASE, PYR6  gene PYR6  function encodes a uridine 5 -monophosphate (UMP)/cytidine 5 -monophosphate (CMP) kinase.  go_component cellular_component|GO:0005575||ND  go_process pyrimidine ribonucleoside monophosphate metabolic process|GO:0009173|9576794|TAS  go_function cytidylate kinase activity|GO:0004127|9576794|IDA  go_function uridylate kinase activity|GO:0009041|9576794|IDA  go_function uridylate kinase activity|GO:0009041||ISS  product PYR6; cytidylate kinase/ uridylate kinase  note PYR6; FUNCTIONS IN: uridylate kinase activity, cytidylate kinase activity; INVOLVED IN: pyrimidine ribonucleoside monophosphate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, cultured cell; CONTAINS InterPro DOMAIN/s: UMP-CMP kinase (InterPro:IPR006266), Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: uridylate kinase, putative / uridine monophosphate kinase, putative / UMP kinase, putative (TAIR:AT3G60180.2); Has 8588 Blast hits to 8435 proteins in 1850 species: Archae - 72; Bacteria - 4362; Metazoa - 1035; Fungi - 301; Plants - 245; Viruses - 0; Other Eukaryotes - 2573 (source: NCBI BLink).  protein_id AT5G26667.3p  transcript_id AT5G26667.3  protein_id AT5G26667.3p  transcript_id AT5G26667.3  
At5g26667	chr5:009276659	0.0	W/9276659-9276719,9276831-9276948,9277070-9277226,9277309-9277389,9277494-9277601,9277687-9277788	AT5G26667.1  CDS  gene_syn CMP/UMP KINASE, PYR6  gene PYR6  function encodes a uridine 5 -monophosphate (UMP)/cytidine 5 -monophosphate (CMP) kinase.  go_component cellular_component|GO:0005575||ND  go_process pyrimidine ribonucleoside monophosphate metabolic process|GO:0009173|9576794|TAS  go_function cytidylate kinase activity|GO:0004127|9576794|IDA  go_function uridylate kinase activity|GO:0009041|9576794|IDA  go_function uridylate kinase activity|GO:0009041||ISS  product PYR6; cytidylate kinase/ uridylate kinase  note PYR6; FUNCTIONS IN: uridylate kinase activity, cytidylate kinase activity; INVOLVED IN: pyrimidine ribonucleoside monophosphate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, cultured cell; CONTAINS InterPro DOMAIN/s: UMP-CMP kinase (InterPro:IPR006266), Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: uridylate kinase, putative / uridine monophosphate kinase, putative / UMP kinase, putative (TAIR:AT3G60180.2); Has 8589 Blast hits to 8436 proteins in 1850 species: Archae - 72; Bacteria - 4362; Metazoa - 1035; Fungi - 301; Plants - 245; Viruses - 0; Other Eukaryotes - 2574 (source: NCBI BLink).  protein_id AT5G26667.1p  transcript_id AT5G26667.1  protein_id AT5G26667.1p  transcript_id AT5G26667.1  
At5g26673	chr5:009279309	0.0	W/9279309-9279611	AT5G26673.1  CDS  function Encodes a Plant thionin family protein  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26717.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G26673.1p  transcript_id AT5G26673.1  protein_id AT5G26673.1p  transcript_id AT5G26673.1  
At5g26692	chr5:009282534	0.0	W/9282534-9282779	AT5G26692.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26717.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G26692.1p  transcript_id AT5G26692.1  protein_id AT5G26692.1p  transcript_id AT5G26692.1  
At5g26717	chr5:009284612	0.0	W/9284612-9284857	AT5G26717.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26692.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G26717.1p  transcript_id AT5G26717.1  protein_id AT5G26717.1p  transcript_id AT5G26717.1  
At5g26742	chr5:009288485	0.0	C/9288485-9288871,9288078-9288214,9287568-9287982,9287372-9287470,9287049-9287273,9286590-9286967,9286276-9286419,9286098-9286193,9285695-9285981,9285540-9285615	AT5G26742.1  CDS  gene_syn emb1138, embryo defective 1138  gene emb1138  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function ATP binding|GO:0005524||ISS  go_function ATP-dependent helicase activity|GO:0008026||ISS  product emb1138 (embryo defective 1138); ATP binding / ATP-dependent helicase/ RNA binding / helicase/ nucleic acid binding / zinc ion binding  note embryo defective 1138 (emb1138); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast, chloroplast stroma, membrane; EXPRESSED IN: guard cell, leaf; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), GUCT (InterPro:IPR012562), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, CCHC-type (InterPro:IPR001878), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: PMH2 (putative mitochondrial RNA helicase 2); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding (TAIR:AT3G22330.1); Has 41960 Blast hits to 39914 proteins in 1975 species: Archae - 839; Bacteria - 17833; Metazoa - 6934; Fungi - 4021; Plants - 1895; Viruses - 98; Other Eukaryotes - 10340 (source: NCBI BLink).  protein_id AT5G26742.1p  transcript_id AT5G26742.1  protein_id AT5G26742.1p  transcript_id AT5G26742.1  
At5g26742	chr5:009288485	0.0	C/9288485-9288871,9288078-9288214,9287568-9287982,9287372-9287470,9287049-9287273,9286590-9286967,9286276-9286419,9286098-9286193,9285695-9285981,9285540-9285618	AT5G26742.2  CDS  gene_syn emb1138, embryo defective 1138  gene emb1138  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function ATP binding|GO:0005524||ISS  go_function ATP-dependent helicase activity|GO:0008026||ISS  product emb1138 (embryo defective 1138); ATP binding / ATP-dependent helicase/ RNA binding / helicase/ nucleic acid binding / zinc ion binding  note embryo defective 1138 (emb1138); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast, membrane; EXPRESSED IN: guard cell, leaf; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), GUCT (InterPro:IPR012562), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, CCHC-type (InterPro:IPR001878), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: PMH2 (putative mitochondrial RNA helicase 2); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding (TAIR:AT3G22330.1); Has 41664 Blast hits to 39827 proteins in 1977 species: Archae - 837; Bacteria - 17695; Metazoa - 6892; Fungi - 3987; Plants - 1854; Viruses - 126; Other Eukaryotes - 10273 (source: NCBI BLink).  protein_id AT5G26742.2p  transcript_id AT5G26742.2  protein_id AT5G26742.2p  transcript_id AT5G26742.2  
At5g26740	chr5:009292436	0.0	W/9292436-9292591,9292688-9292761,9292923-9293072,9293325-9293610,9293722-9293955,9294039-9294407	AT5G26740.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF300 (InterPro:IPR005178); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05940.1); Has 662 Blast hits to 655 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 312; Fungi - 124; Plants - 129; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).  protein_id AT5G26740.1p  transcript_id AT5G26740.1  protein_id AT5G26740.1p  transcript_id AT5G26740.1  
At5g26740	chr5:009292436	0.0	W/9292436-9292591,9292688-9292761,9292923-9293072,9293325-9293610,9293722-9293955,9294039-9294407	AT5G26740.2  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF300 (InterPro:IPR005178); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05940.1); Has 662 Blast hits to 655 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 312; Fungi - 124; Plants - 129; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).  protein_id AT5G26740.2p  transcript_id AT5G26740.2  protein_id AT5G26740.2p  transcript_id AT5G26740.2  
At5g26740	chr5:009292436	0.0	W/9292436-9292591,9292688-9292761,9292923-9293072,9293325-9293610,9293722-9293955,9294039-9294407	AT5G26740.3  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF300 (InterPro:IPR005178); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05940.1); Has 662 Blast hits to 655 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 312; Fungi - 124; Plants - 129; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).  protein_id AT5G26740.3p  transcript_id AT5G26740.3  protein_id AT5G26740.3p  transcript_id AT5G26740.3  
At5g26731	chr5:009295676	0.0	W/9295676-9295975	AT5G26731.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G26731.1p  transcript_id AT5G26731.1  protein_id AT5G26731.1p  transcript_id AT5G26731.1  
At5g26730	chr5:009300422	0.0	W/9300422-9300478,9300553-9300801,9301490-9301990	AT5G26730.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16920.1); Has 15 Blast hits to 15 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G26730.1p  transcript_id AT5G26730.1  protein_id AT5G26730.1p  transcript_id AT5G26730.1  
At5g26720	chr5:009304105	0.0	W/9304105-9304509	AT5G26720.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G26720.1p  transcript_id AT5G26720.1  protein_id AT5G26720.1p  transcript_id AT5G26720.1  
At5g26710	chr5:009305673	0.0	W/9305673-9305812,9305892-9305991,9306085-9306238,9306317-9307404,9307485-9307952,9308038-9308247	AT5G26710.1  CDS  go_component cytoplasm|GO:0005737||IEA  go_process translation|GO:0006412||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_process glutamyl-tRNA aminoacylation|GO:0006424||IEA  go_function glutamate-tRNA ligase activity|GO:0004818|9765600|ISS  product glutamate-tRNA ligase, putative / glutamyl-tRNA synthetase, putatuve / GluRS, putative  note glutamate-tRNA ligase, putative / glutamyl-tRNA synthetase, putatuve / GluRS, putative; FUNCTIONS IN: glutamate-tRNA ligase activity; INVOLVED IN: glutamyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Glutamyl/glutaminyl-tRNA synthetase, class Ic (InterPro:IPR000924), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutamyl-tRNA synthetase, class Ic, archaeal/eukaryotic cytosolic (InterPro:IPR004526), Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding (InterPro:IPR011035); BEST Arabidopsis thaliana protein match is: OVA9 (ovule abortion 9); glutamine-tRNA ligase (TAIR:AT1G25350.1); Has 9638 Blast hits to 9631 proteins in 1694 species: Archae - 170; Bacteria - 5255; Metazoa - 545; Fungi - 286; Plants - 136; Viruses - 0; Other Eukaryotes - 3246 (source: NCBI BLink).  protein_id AT5G26710.1p  transcript_id AT5G26710.1  protein_id AT5G26710.1p  transcript_id AT5G26710.1  
At5g26700	chr5:009309443	0.0	C/9309443-9309548,9308439-9308974	AT5G26700.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process biological_process|GO:0008150||ND  product germin-like protein, putative  note germin-like protein, putative; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), Germin (InterPro:IPR001929), RmlC-like jelly roll fold (InterPro:IPR014710), 11-S plant seed storage protein (InterPro:IPR006044); BEST Arabidopsis thaliana protein match is: GLP8 (GERMIN-LIKE PROTEIN 8); manganese ion binding / nutrient reservoir (TAIR:AT3G05930.1); Has 1296 Blast hits to 1286 proteins in 184 species: Archae - 2; Bacteria - 138; Metazoa - 2; Fungi - 54; Plants - 1090; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G26700.1p  transcript_id AT5G26700.1  protein_id AT5G26700.1p  transcript_id AT5G26700.1  
At5g26690	chr5:009310905	0.0	W/9310905-9310916,9310996-9311071,9311155-9311411	AT5G26690.1  CDS  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT3G05920.1); Has 427 Blast hits to 409 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 427; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G26690.1p  transcript_id AT5G26690.1  protein_id AT5G26690.1p  transcript_id AT5G26690.1  
At5g26680	chr5:009315447	0.0	C/9315447-9315458,9315232-9315348,9315098-9315156,9314868-9314927,9314735-9314788,9314590-9314638,9314461-9314508,9314278-9314343,9314106-9314156,9313874-9313993,9313710-9313794,9313542-9313623,9313096-9313210,9312947-9313003,9312797-9312843,9312661-9312715,9311882-9311956	AT5G26680.2  CDS  go_process DNA repair|GO:0006281||IEA  go_function DNA binding|GO:0003677||IEA  go_function catalytic activity|GO:0003824||IEA  go_function nuclease activity|GO:0004518||IEA  go_function 5 -3  exonuclease activity|GO:0008409||IEA  go_process DNA repair|GO:0006281||ISS  go_function nuclease activity|GO:0004518||ISS  product endonuclease, putative  note endonuclease, putative; FUNCTIONS IN: 5 -3  exonuclease activity, DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), 5 -3  exonuclease (InterPro:IPR002421), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG I (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: DNA binding / catalytic/ nuclease (TAIR:AT1G29630.2).  protein_id AT5G26680.2p  transcript_id AT5G26680.2  protein_id AT5G26680.2p  transcript_id AT5G26680.2  
At5g26680	chr5:009315447	0.0	C/9315447-9315458,9315232-9315348,9315098-9315156,9314868-9314927,9314735-9314788,9314590-9314638,9314461-9314508,9314278-9314343,9314106-9314156,9313874-9313993,9313710-9313794,9313542-9313623,9313096-9313210,9312947-9313003,9312797-9312843,9312661-9312715,9312151-9312360,9311882-9311956	AT5G26680.1  CDS  go_process DNA repair|GO:0006281||IEA  go_function DNA binding|GO:0003677||IEA  go_function catalytic activity|GO:0003824||IEA  go_function nuclease activity|GO:0004518||IEA  go_function 5 -3  exonuclease activity|GO:0008409||IEA  go_process DNA repair|GO:0006281||ISS  go_function nuclease activity|GO:0004518||ISS  product endonuclease, putative  note endonuclease, putative; FUNCTIONS IN: 5 -3  exonuclease activity, DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), 5 -3  exonuclease (InterPro:IPR002421), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG I (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: DNA binding / catalytic/ nuclease (TAIR:AT1G29630.2); Has 2583 Blast hits to 2338 proteins in 522 species: Archae - 199; Bacteria - 468; Metazoa - 566; Fungi - 511; Plants - 145; Viruses - 33; Other Eukaryotes - 661 (source: NCBI BLink).  protein_id AT5G26680.1p  transcript_id AT5G26680.1  protein_id AT5G26680.1p  transcript_id AT5G26680.1  
At5g26670	chr5:009318456	0.0	W/9318456-9318654,9318857-9318939,9319024-9319153,9319234-9319307,9319418-9319504,9319594-9319718,9319816-9319876,9319970-9320023,9320119-9320196,9320279-9320384,9320468-9320613,9320709-9320816	AT5G26670.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product pectinacetylesterase, putative  note pectinacetylesterase, putative; FUNCTIONS IN: carboxylesterase activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinacetylesterase (InterPro:IPR004963); BEST Arabidopsis thaliana protein match is: pectinacetylesterase, putative (TAIR:AT3G05910.1); Has 391 Blast hits to 385 proteins in 75 species: Archae - 0; Bacteria - 32; Metazoa - 114; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT5G26670.1p  transcript_id AT5G26670.1  protein_id AT5G26670.1p  transcript_id AT5G26670.1  
At5g26670	chr5:009319096	0.0	W/9319096-9319153,9319234-9319307,9319418-9319504,9319594-9319718,9319816-9319876,9319970-9320023,9320119-9320196,9320279-9320384,9320468-9320613,9320709-9320816	AT5G26670.2  CDS  go_function carboxylesterase activity|GO:0004091||ISS  product pectinacetylesterase, putative  note pectinacetylesterase, putative; FUNCTIONS IN: carboxylesterase activity; CONTAINS InterPro DOMAIN/s: Pectinacetylesterase (InterPro:IPR004963); BEST Arabidopsis thaliana protein match is: pectinacetylesterase, putative (TAIR:AT3G05910.1); Has 338 Blast hits to 332 proteins in 63 species: Archae - 0; Bacteria - 4; Metazoa - 112; Fungi - 0; Plants - 157; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT5G26670.2p  transcript_id AT5G26670.2  protein_id AT5G26670.2p  transcript_id AT5G26670.2  
At5g26660	chr5:009332912	0.0	C/9332912-9333044,9332678-9332807,9331775-9332570	AT5G26660.1  CDS  gene_syn ARABIDOPSIS MYB DOMAIN PROTEIN 4, ATMYB4, ATMYB86, MYB DOMAIN PROTEIN 86, myb domain protein 4  gene ATMYB86  function a MYB gene encodes a transcriptional repressor of the C4H gene which is involved in the biosynthesis of sinapate esters.  go_process response to UV|GO:0009411|11080161|IMP  go_process phenylpropanoid biosynthetic process|GO:0009699|11080161|IMP  go_function transcription repressor activity|GO:0016564|11080161|IMP  go_function transcription repressor activity|GO:0016564|11286899|TAS  go_function specific transcriptional repressor activity|GO:0016566|11080161|IDA  go_function specific transcriptional repressor activity|GO:0016566|11080161|IMP  product ATMYB86 (MYB DOMAIN PROTEIN 86); specific transcriptional repressor/ transcription repressor  note MYB DOMAIN PROTEIN 86 (ATMYB86); FUNCTIONS IN: transcription repressor activity, specific transcriptional repressor activity; INVOLVED IN: response to UV, phenylpropanoid biosynthetic process; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: AtMYB50 (myb domain protein 50); DNA binding / transcription factor (TAIR:AT1G57560.1); Has 6465 Blast hits to 5908 proteins in 354 species: Archae - 0; Bacteria - 3; Metazoa - 717; Fungi - 324; Plants - 3796; Viruses - 6; Other Eukaryotes - 1619 (source: NCBI BLink).  protein_id AT5G26660.1p  transcript_id AT5G26660.1  protein_id AT5G26660.1p  transcript_id AT5G26660.1  
At5g26650	chr5:009343785	0.0	W/9343785-9344885	AT5G26650.1  CDS  gene_syn AGAMOUS-LIKE 36, AGL36  gene AGL36  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL36 (AGAMOUS-LIKE 36); DNA binding / transcription factor  note AGAMOUS-LIKE 36 (AGL36); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: MADS-box protein (AGL90) (TAIR:AT5G27960.1); Has 2636 Blast hits to 2626 proteins in 348 species: Archae - 0; Bacteria - 0; Metazoa - 514; Fungi - 104; Plants - 1964; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT5G26650.1p  transcript_id AT5G26650.1  protein_id AT5G26650.1p  transcript_id AT5G26650.1  
At5g26640	chr5:009348041	0.0	C/9348041-9348174,9347841-9347895	AT5G26640.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 226 Blast hits to 226 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 67; Plants - 17; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT5G26640.1p  transcript_id AT5G26640.1  protein_id AT5G26640.1p  transcript_id AT5G26640.1  
At5g26630	chr5:009350815	0.0	W/9350815-9351471	AT5G26630.1  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product MADS-box protein (AGL35)  note MADS-box protein (AGL35); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL80 (AGAMOUS-LIKE 80); DNA binding / transcription factor (TAIR:AT5G48670.1); Has 3631 Blast hits to 3630 proteins in 447 species: Archae - 0; Bacteria - 0; Metazoa - 461; Fungi - 171; Plants - 2953; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT5G26630.1p  transcript_id AT5G26630.1  protein_id AT5G26630.1p  transcript_id AT5G26630.1  
At5g26622	chr5:009356004	0.0	C/9356004-9356891	AT5G26622.1  CDS  go_component beta-galactosidase complex|GO:0009341||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  product beta-galactosidase  note beta-galactosidase; FUNCTIONS IN: beta-galactosidase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: beta-galactosidase complex; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944); BEST Arabidopsis thaliana protein match is: beta-galactosidase (TAIR:AT3G44070.1); Has 25 Blast hits to 25 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G26622.1p  transcript_id AT5G26622.1  protein_id AT5G26622.1p  transcript_id AT5G26622.1  
At5g26622	chr5:009356569	0.0	C/9356569-9356891,9356404-9356428	AT5G26622.2  CDS  go_component beta-galactosidase complex|GO:0009341||IEA  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  product beta-galactosidase  note beta-galactosidase; FUNCTIONS IN: beta-galactosidase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system, beta-galactosidase complex; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944); BEST Arabidopsis thaliana protein match is: beta-galactosidase (TAIR:AT2G04378.2); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G26622.2p  transcript_id AT5G26622.2  protein_id AT5G26622.2p  transcript_id AT5G26622.2  
At5g26617	chr5:009360462	0.0	W/9360462-9360781,9360880-9360988	AT5G26617.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT3G09510.1); Has 62 Blast hits to 62 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G26617.1p  transcript_id AT5G26617.1  protein_id AT5G26617.1p  transcript_id AT5G26617.1  
At5g26620	chr5:009366957	0.0	C/9366957-9366963,9366697-9366914	AT5G26620.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 19 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G26620.1p  transcript_id AT5G26620.1  protein_id AT5G26620.1p  transcript_id AT5G26620.1  
At5g26610	chr5:009375456	0.0	W/9375456-9375527,9375620-9375815,9375900-9376054,9376196-9376339,9376427-9376521,9376619-9376784,9376914-9376991	AT5G26610.1  CDS  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component intracellular|GO:0005622||ISS  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product D111/G-patch domain-containing protein  note D111/G-patch domain-containing protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), D111/G-patch (InterPro:IPR000467), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: D111/G-patch domain-containing protein (TAIR:AT2G42330.2); Has 2158 Blast hits to 1959 proteins in 193 species: Archae - 1; Bacteria - 43; Metazoa - 1258; Fungi - 212; Plants - 135; Viruses - 16; Other Eukaryotes - 493 (source: NCBI BLink).  protein_id AT5G26610.1p  transcript_id AT5G26610.1  protein_id AT5G26610.1p  transcript_id AT5G26610.1  
At5g26610	chr5:009375456	0.0	W/9375456-9375527,9375620-9375815,9375900-9376054,9376196-9376339,9376427-9376521,9376619-9376784,9376914-9376991	AT5G26610.2  CDS  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component intracellular|GO:0005622||ISS  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product D111/G-patch domain-containing protein  note D111/G-patch domain-containing protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), D111/G-patch (InterPro:IPR000467), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: D111/G-patch domain-containing protein (TAIR:AT2G42330.2); Has 2158 Blast hits to 1959 proteins in 193 species: Archae - 1; Bacteria - 43; Metazoa - 1258; Fungi - 212; Plants - 135; Viruses - 16; Other Eukaryotes - 493 (source: NCBI BLink).  protein_id AT5G26610.2p  transcript_id AT5G26610.2  protein_id AT5G26610.2p  transcript_id AT5G26610.2  
At5g26600	chr5:009377455	0.0	W/9377455-9378882	AT5G26600.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  product catalytic/ pyridoxal phosphate binding  note catalytic/ pyridoxal phosphate binding; FUNCTIONS IN: pyridoxal phosphate binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase, class V/Cysteine desulfurase (InterPro:IPR000192), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: epimerase-related (TAIR:AT3G62130.1); Has 3925 Blast hits to 3925 proteins in 952 species: Archae - 92; Bacteria - 2185; Metazoa - 19; Fungi - 114; Plants - 63; Viruses - 1; Other Eukaryotes - 1451 (source: NCBI BLink).  protein_id AT5G26600.1p  transcript_id AT5G26600.1  protein_id AT5G26600.1p  transcript_id AT5G26600.1  
At5g26600	chr5:009377455	0.0	W/9377455-9378882	AT5G26600.2  CDS  go_component chloroplast|GO:0009507||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  product catalytic/ pyridoxal phosphate binding  note catalytic/ pyridoxal phosphate binding; FUNCTIONS IN: pyridoxal phosphate binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase, class V/Cysteine desulfurase (InterPro:IPR000192), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: epimerase-related (TAIR:AT3G62130.1); Has 3925 Blast hits to 3925 proteins in 952 species: Archae - 92; Bacteria - 2185; Metazoa - 19; Fungi - 114; Plants - 63; Viruses - 1; Other Eukaryotes - 1451 (source: NCBI BLink).  protein_id AT5G26600.2p  transcript_id AT5G26600.2  protein_id AT5G26600.2p  transcript_id AT5G26600.2  
At5g26590	chr5:009381992	0.0	C/9381992-9382331	AT5G26590.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.3e-11 P-value blast match to GB:AAC24836 pol polyprotein (Ty1_Copia-element) (Candida albicans)  
At5g26582	chr5:009388756	0.0	C/9388756-9392082	AT5G26582.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.1e-42 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At5g26580	chr5:009393065	0.0	C/9393065-9394102	AT5G26580.1  CDS  gene_syn AGL34  gene AGL34  function Type I member of MADs box domain transcription factor family. This class lacks the K-domain required for dimerization that is characteristic of class II MADS box proteins.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL34; DNA binding / transcription factor  note AGL34; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL36 (AGAMOUS-LIKE 36); DNA binding / transcription factor (TAIR:AT5G26650.1); Has 3400 Blast hits to 3397 proteins in 438 species: Archae - 0; Bacteria - 0; Metazoa - 527; Fungi - 169; Plants - 2662; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT5G26580.1p  transcript_id AT5G26580.1  protein_id AT5G26580.1p  transcript_id AT5G26580.1  
At5g26749	chr5:009399107	0.0	C/9399107-9399239,9398958-9399022,9398690-9398753,9398487-9398558,9398285-9398394	AT5G26749.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding / zinc ion binding  note nucleic acid binding / zinc ion binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Zinc finger, U1-C type (InterPro:IPR013085), Zinc finger, U1-type (InterPro:IPR003604).  protein_id AT5G26749.1p  transcript_id AT5G26749.1  protein_id AT5G26749.1p  transcript_id AT5G26749.1  
At5g26751	chr5:009401738	0.0	C/9401738-9401839,9401568-9401660,9401401-9401460,9401033-9401305,9400883-9400957,9400730-9400786,9400502-9400642,9400364-9400414,9400169-9400264,9399984-9400067,9399767-9399869,9399582-9399664	AT5G26751.1  CDS  gene_syn ASKALPHA, ATSK11, F2P16.21, F2P16_21  gene ATSK11  function encodes a SHAGGY-related kinase involved in meristem organization.  go_component cytosol|GO:0005829|18433157|IDA  go_process meristem structural organization|GO:0009933|10758494|IMP  go_process phosphorylation|GO:0016310|7509023|IDA  go_function protein kinase activity|GO:0004672||ISS  go_function protein serine/threonine kinase activity|GO:0004674|9611268|ISS  product ATSK11; protein kinase/ protein serine/threonine kinase  note ATSK11; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity; INVOLVED IN: meristem structural organization, phosphorylation; LOCATED IN: cytosol; EXPRESSED IN: whole plant, inflorescence meristem, cultured cell; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATSK12; protein kinase/ protein serine/threonine kinase (TAIR:AT3G05840.2); Has 77976 Blast hits to 76875 proteins in 2502 species: Archae - 34; Bacteria - 6156; Metazoa - 32806; Fungi - 7921; Plants - 15227; Viruses - 360; Other Eukaryotes - 15472 (source: NCBI BLink).  protein_id AT5G26751.1p  transcript_id AT5G26751.1  protein_id AT5G26751.1p  transcript_id AT5G26751.1  
At5g26760	chr5:009405128	0.0	C/9405128-9405704,9404824-9405023,9404480-9404743,9404058-9404204,9403869-9403973	AT5G26760.1  CDS  gene_syn F2P16.20, F2P16_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 44 Blast hits to 37 proteins in 20 species: Archae - 0; Bacteria - 1; Metazoa - 4; Fungi - 21; Plants - 16; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G26760.1p  transcript_id AT5G26760.1  protein_id AT5G26760.1p  transcript_id AT5G26760.1  
At5g26760	chr5:009406606	0.0	C/9406606-9407170,9406315-9406515,9405965-9406063,9405128-9405754,9404824-9405023,9404480-9404743,9404058-9404204,9403869-9403973	AT5G26760.2  CDS  gene_syn F2P16.20, F2P16_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF408 (InterPro:IPR007308); Has 247 Blast hits to 205 proteins in 87 species: Archae - 0; Bacteria - 73; Metazoa - 105; Fungi - 29; Plants - 21; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT5G26760.2p  transcript_id AT5G26760.2  protein_id AT5G26760.2p  transcript_id AT5G26760.2  
At5g26770	chr5:009409568	0.0	C/9409568-9409735,9409304-9409411,9408411-9408872,9408240-9408341,9407981-9408148	AT5G26770.1  CDS  gene_syn F2P16.30, F2P16_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05830.1); Has 29256 Blast hits to 16095 proteins in 1040 species: Archae - 274; Bacteria - 2148; Metazoa - 17915; Fungi - 1949; Plants - 981; Viruses - 63; Other Eukaryotes - 5926 (source: NCBI BLink).  protein_id AT5G26770.1p  transcript_id AT5G26770.1  protein_id AT5G26770.1p  transcript_id AT5G26770.1  
At5g26770	chr5:009409568	0.0	C/9409568-9409735,9409304-9409411,9408411-9408872,9408240-9408341,9407981-9408148	AT5G26770.2  CDS  gene_syn F2P16.30, F2P16_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05830.1); Has 29256 Blast hits to 16095 proteins in 1040 species: Archae - 274; Bacteria - 2148; Metazoa - 17915; Fungi - 1949; Plants - 981; Viruses - 63; Other Eukaryotes - 5926 (source: NCBI BLink).  protein_id AT5G26770.2p  transcript_id AT5G26770.2  protein_id AT5G26770.2p  transcript_id AT5G26770.2  
At5g26770	chr5:009409568	0.0	C/9409568-9409735,9409304-9409411,9408411-9408872,9408300-9408341,9407981-9408148	AT5G26770.3  CDS  gene_syn F2P16.30, F2P16_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05830.1); Has 21860 Blast hits to 12797 proteins in 893 species: Archae - 209; Bacteria - 1531; Metazoa - 13427; Fungi - 1503; Plants - 676; Viruses - 35; Other Eukaryotes - 4479 (source: NCBI BLink).  protein_id AT5G26770.3p  transcript_id AT5G26770.3  protein_id AT5G26770.3p  transcript_id AT5G26770.3  
At5g26775	chr5:009411666	0.0	W/9411666-9416927	AT5G26775.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 5.9e-28 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At5g26780	chr5:009418299	0.0	W/9418299-9418385,9418465-9418515,9418604-9418690,9418782-9418903,9418984-9419060,9419154-9419278,9419395-9419487,9419660-9419752,9419834-9420031,9420122-9420226,9420381-9420446,9420529-9420654,9420983-9421094,9421382-9421492,9421577-9421725	AT5G26780.2  CDS  gene_syn F2P16.40, F2P16_40, SERINE HYDROXYMETHYLTRANSFERASE 2, SHM2  gene SHM2  function Encodes a protein with serine hydroxymethyltransferase activity which is thought to be localized in the mitochondrial matrix. SHM2 expression fails to rescue the conditional lethal phenotype of the shm1-1 mutant, defective in SHM1.  go_process glycine metabolic process|GO:0006544||IEA  go_process L-serine metabolic process|GO:0006563||IEA  go_function catalytic activity|GO:0003824||IEA  go_function glycine hydroxymethyltransferase activity|GO:0004372||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process glycine metabolic process|GO:0006544||ISS  go_process L-serine metabolic process|GO:0006563||ISS  go_function glycine hydroxymethyltransferase activity|GO:0004372||ISS  product SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding  note SERINE HYDROXYMETHYLTRANSFERASE 2 (SHM2); FUNCTIONS IN: pyridoxal phosphate binding, glycine hydroxymethyltransferase activity, catalytic activity; INVOLVED IN: glycine metabolic process, L-serine metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Glycine hydroxymethyltransferase (InterPro:IPR001085); BEST Arabidopsis thaliana protein match is: SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1); glycine hydroxymethyltransferase/ poly(U) binding (TAIR:AT4G37930.1); Has 8276 Blast hits to 8260 proteins in 1623 species: Archae - 141; Bacteria - 3474; Metazoa - 293; Fungi - 187; Plants - 215; Viruses - 6; Other Eukaryotes - 3960 (source: NCBI BLink).  protein_id AT5G26780.2p  transcript_id AT5G26780.2  protein_id AT5G26780.2p  transcript_id AT5G26780.2  
At5g26780	chr5:009418299	0.0	W/9418299-9418385,9418465-9418515,9418604-9418690,9418782-9418903,9418984-9419060,9419154-9419278,9419395-9419487,9419660-9419752,9419834-9420031,9420122-9420226,9420381-9420446,9420529-9420654,9420983-9421094,9421382-9421492,9421577-9421725	AT5G26780.3  CDS  gene_syn F2P16.40, F2P16_40, SERINE HYDROXYMETHYLTRANSFERASE 2, SHM2  gene SHM2  function Encodes a protein with serine hydroxymethyltransferase activity which is thought to be localized in the mitochondrial matrix. SHM2 expression fails to rescue the conditional lethal phenotype of the shm1-1 mutant, defective in SHM1.  go_process glycine metabolic process|GO:0006544||IEA  go_process L-serine metabolic process|GO:0006563||IEA  go_function catalytic activity|GO:0003824||IEA  go_function glycine hydroxymethyltransferase activity|GO:0004372||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process glycine metabolic process|GO:0006544||ISS  go_process L-serine metabolic process|GO:0006563||ISS  go_function glycine hydroxymethyltransferase activity|GO:0004372||ISS  product SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding  note SERINE HYDROXYMETHYLTRANSFERASE 2 (SHM2); FUNCTIONS IN: pyridoxal phosphate binding, glycine hydroxymethyltransferase activity, catalytic activity; INVOLVED IN: glycine metabolic process, L-serine metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Glycine hydroxymethyltransferase (InterPro:IPR001085); BEST Arabidopsis thaliana protein match is: SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1); glycine hydroxymethyltransferase/ poly(U) binding (TAIR:AT4G37930.1); Has 8276 Blast hits to 8260 proteins in 1623 species: Archae - 141; Bacteria - 3474; Metazoa - 293; Fungi - 187; Plants - 215; Viruses - 6; Other Eukaryotes - 3960 (source: NCBI BLink).  protein_id AT5G26780.3p  transcript_id AT5G26780.3  protein_id AT5G26780.3p  transcript_id AT5G26780.3  
At5g26780	chr5:009418299	0.0	W/9418299-9418385,9418465-9418515,9418604-9418690,9418782-9418903,9418984-9419060,9419154-9419278,9419395-9419487,9419660-9419752,9419834-9420031,9420122-9420226,9420381-9420446,9420577-9420654,9420983-9421094,9421382-9421492,9421577-9421725	AT5G26780.1  CDS  gene_syn F2P16.40, F2P16_40, SERINE HYDROXYMETHYLTRANSFERASE 2, SHM2  gene SHM2  function Encodes a protein with serine hydroxymethyltransferase activity which is thought to be localized in the mitochondrial matrix. SHM2 expression fails to rescue the conditional lethal phenotype of the shm1-1 mutant, defective in SHM1.  go_process glycine metabolic process|GO:0006544||IEA  go_process L-serine metabolic process|GO:0006563||IEA  go_function catalytic activity|GO:0003824||IEA  go_function glycine hydroxymethyltransferase activity|GO:0004372||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process glycine metabolic process|GO:0006544||ISS  go_process L-serine metabolic process|GO:0006563||ISS  go_function glycine hydroxymethyltransferase activity|GO:0004372||ISS  product SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding  note SERINE HYDROXYMETHYLTRANSFERASE 2 (SHM2); FUNCTIONS IN: pyridoxal phosphate binding, glycine hydroxymethyltransferase activity, catalytic activity; INVOLVED IN: glycine metabolic process, L-serine metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Glycine hydroxymethyltransferase (InterPro:IPR001085); BEST Arabidopsis thaliana protein match is: SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1); glycine hydroxymethyltransferase/ poly(U) binding (TAIR:AT4G37930.1); Has 8281 Blast hits to 8266 proteins in 1624 species: Archae - 141; Bacteria - 3481; Metazoa - 292; Fungi - 187; Plants - 215; Viruses - 6; Other Eukaryotes - 3959 (source: NCBI BLink).  protein_id AT5G26780.1p  transcript_id AT5G26780.1  protein_id AT5G26780.1p  transcript_id AT5G26780.1  
At5g26790	chr5:009423151	0.0	W/9423151-9423357	AT5G26790.1  CDS  gene_syn F2P16.50, F2P16_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; Has 14 Blast hits to 14 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G26790.1p  transcript_id AT5G26790.1  protein_id AT5G26790.1p  transcript_id AT5G26790.1  
At5g26800	chr5:009425224	0.0	W/9425224-9425335,9425630-9425736,9426250-9426417	AT5G26800.1  CDS  gene_syn F2P16.4, F2P16_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05810.1); Has 29 Blast hits to 29 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G26800.1p  transcript_id AT5G26800.1  protein_id AT5G26800.1p  transcript_id AT5G26800.1  
At5g26805	chr5:009427548	0.0	W/9427548-9428018	AT5G26805.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 12 Blast hits to 12 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G26805.1p  transcript_id AT5G26805.1  protein_id AT5G26805.1p  transcript_id AT5G26805.1  
At5g26810	chr5:009430952	0.0	W/9430952-9431075,9431618-9431730,9431836-9432063,9432471-9432721,9432804-9432969	AT5G26810.1  CDS  gene_syn F2P16.5, F2P16_5  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT5G18990.1); Has 1171 Blast hits to 1149 proteins in 173 species: Archae - 0; Bacteria - 244; Metazoa - 1; Fungi - 120; Plants - 806; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G26810.1p  transcript_id AT5G26810.1  protein_id AT5G26810.1p  transcript_id AT5G26810.1  
At5g26820	chr5:009433858	0.0	W/9433858-9434030,9434120-9434333,9434420-9434483,9434583-9434797,9434928-9435104,9435188-9435262,9435360-9435461,9435831-9435942,9436040-9436186,9436319-9436425,9436516-9436629,9436709-9437005	AT5G26820.1  CDS  gene_syn ATIREG3, F2P16.6, F2P16_6, IRON-REGULATED PROTEIN 3  gene ATIREG3  go_component membrane|GO:0016020|11152613|ISS  product ATIREG3 (IRON-REGULATED PROTEIN 3)  note IRON-REGULATED PROTEIN 3 (ATIREG3); LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ATIREG2 (IRON-REGULATED PROTEIN 2); nickel ion transmembrane transporter (TAIR:AT5G03570.1); Has 183 Blast hits to 183 proteins in 57 species: Archae - 0; Bacteria - 2; Metazoa - 84; Fungi - 42; Plants - 43; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT5G26820.1p  transcript_id AT5G26820.1  protein_id AT5G26820.1p  transcript_id AT5G26820.1  
At5g26830	chr5:009437351	0.0	W/9437351-9437577,9437687-9437924,9438019-9438078,9438238-9438327,9438496-9438570,9438689-9438817,9438901-9438990,9439069-9439157,9439237-9439333,9439407-9439493,9439583-9439667,9439962-9440056,9440150-9440182,9440268-9440354,9440458-9440550,9440627-9440719,9440820-9441041,9441143-9441214,9441311-9441382,9441473-9441568	AT5G26830.1  CDS  gene_syn F2P16.7, F2P16_7  function Encodes a dual-targeted threonyl-tRNA synthetase found in both the chloroplast and mitochondrion.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process translation|GO:0006412||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_process threonyl-tRNA aminoacylation|GO:0006435||IEA  go_process tRNA aminoacylation|GO:0043039||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function threonine-tRNA ligase activity|GO:0004829||IEA  go_function ATP binding|GO:0005524||IEA  go_function ligase activity, forming aminoacyl-tRNA and related compounds|GO:0016876||IEA  go_component mitochondrion|GO:0005739|16251277|IDA  go_component chloroplast|GO:0009507|16251277|IDA  go_process threonyl-tRNA aminoacylation|GO:0006435||ISS  go_function threonine-tRNA ligase activity|GO:0004829||ISS  product threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS)  note threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS); FUNCTIONS IN: ligase activity, forming aminoacyl-tRNA and related compounds, threonine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: threonyl-tRNA aminoacylation, tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: mitochondrion, cell wall, chloroplast, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain (InterPro:IPR018163), Threonyl-tRNA synthetase, class IIa (InterPro:IPR002320), Aminoacyl-tRNA synthetase, class II (G, H, P and S), conserved region (InterPro:IPR002314), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), Aminoacyl-tRNA synthetase, class II, conserved region (InterPro:IPR006195), Threonyl/alanyl tRNA synthetase, SAD (InterPro:IPR012947), TGS-like (InterPro:IPR012676), TGS (InterPro:IPR004095), Anticodon-binding (InterPro:IPR004154), Threonyl-tRNA synthetase, class IIa, conserved region (InterPro:IPR018158); BEST Arabidopsis thaliana protein match is: EMB2761 (EMBRYO DEFECTIVE 2761); ATP binding / aminoacyl-tRNA ligase/ ligase, forming aminoacyl-tRNA and related compounds / nucleotide binding / threonine-tRNA ligase (TAIR:AT2G04842.1); Has 13482 Blast hits to 13370 proteins in 1655 species: Archae - 259; Bacteria - 6082; Metazoa - 410; Fungi - 199; Plants - 59; Viruses - 0; Other Eukaryotes - 6473 (source: NCBI BLink).  protein_id AT5G26830.1p  transcript_id AT5G26830.1  protein_id AT5G26830.1p  transcript_id AT5G26830.1  
At5g26840	chr5:009442510	0.0	C/9442510-9442605,9442288-9442455	AT5G26840.1  CDS  gene_syn F2P16.100, F2P16_100  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G26840.1p  transcript_id AT5G26840.1  protein_id AT5G26840.1p  transcript_id AT5G26840.1  
At5g26848	chr5:009445119	0.0	C/9445119-9445367	AT5G26848.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G26848.1p  transcript_id AT5G26848.1  protein_id AT5G26848.1p  transcript_id AT5G26848.1  
At5g26850	chr5:009445950	0.0	W/9445950-9446084,9446266-9446340,9446430-9446545,9446658-9446772,9446898-9447026,9447130-9447371,9447471-9447667,9447745-9448181,9448264-9448641,9448732-9448881,9448997-9449075,9449155-9449279,9449368-9449559,9449659-9449793,9449877-9450002,9450093-9450287,9450459-9450584	AT5G26850.1  CDS  gene_syn F2P16.24, F2P16_24  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: cyclin-related (TAIR:AT2G41830.1); Has 199 Blast hits to 197 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 19; Plants - 59; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G26850.1p  transcript_id AT5G26850.1  protein_id AT5G26850.1p  transcript_id AT5G26850.1  
At5g26850	chr5:009445950	0.0	W/9445950-9446084,9446266-9446340,9446430-9446545,9446658-9446772,9446898-9447026,9447130-9447371,9447471-9447667,9447745-9448181,9448264-9448641,9448732-9448881,9448997-9449075,9449155-9449279,9449368-9449559,9449659-9449793,9449877-9450002,9450093-9450287,9450459-9450584	AT5G26850.2  CDS  gene_syn F2P16.24, F2P16_24  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: cyclin-related (TAIR:AT2G41830.1); Has 199 Blast hits to 197 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 19; Plants - 59; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G26850.2p  transcript_id AT5G26850.2  protein_id AT5G26850.2p  transcript_id AT5G26850.2  
At5g26850	chr5:009445950	0.0	W/9445950-9446084,9446266-9446340,9446430-9446545,9446658-9446772,9446898-9447026,9447130-9447371,9447471-9447667,9447745-9448181,9448264-9448641,9448732-9448881,9448997-9449075,9449155-9449279,9449368-9449559,9449659-9449793,9449877-9450002,9450093-9450287,9450459-9450584	AT5G26850.3  CDS  gene_syn F2P16.24, F2P16_24  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: cyclin-related (TAIR:AT2G41830.1); Has 199 Blast hits to 197 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 19; Plants - 59; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G26850.3p  transcript_id AT5G26850.3  protein_id AT5G26850.3p  transcript_id AT5G26850.3  
At5g26860	chr5:009451048	0.0	W/9451048-9451479,9451877-9451942,9452386-9452571,9452643-9452708,9452849-9452890,9453001-9453123,9453209-9453307,9453380-9453445,9453546-9453632,9453742-9453781,9453978-9454149,9454311-9454435,9454517-9454647,9454750-9454854,9454987-9455100,9455242-9455409,9455533-9455634,9455710-9456360,9456449-9456631	AT5G26860.1  CDS  gene_syn F2P16.23, F2P16_23, LON PROTEASE 1, LON1, LON_ARA_ARA  gene LON1  function Encodes a member of the Lon protease-like proteins (Lon1/At5g26860, Lon2/At5g47040, Lon3/At3g05780, Lon4/At3g05790). Lon is a multifunctional ATP-dependent protease which exists in bacteria, archaea and within organelles in eukaryotic cells. Lon proteases are responsible for the degradation of abnormal, damaged and unstable proteins.  go_component mitochondrion|GO:0005739|17137349|IDA  go_process proteolysis|GO:0006508||IEA  go_process ATP-dependent proteolysis|GO:0006510||IEA  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|17478548|IDA  go_component mitochondrion|GO:0005739|9668139|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component chloroplast|GO:0009507|17478548|IDA  go_function ATP-dependent peptidase activity|GO:0004176||ISS  go_function ATP binding|GO:0005524||ISS  go_function serine-type peptidase activity|GO:0008236||ISS  product LON1 (LON PROTEASE 1); ATP binding / ATP-dependent peptidase/ serine-type peptidase  note LON PROTEASE 1 (LON1); FUNCTIONS IN: serine-type peptidase activity, ATP-dependent peptidase activity, ATP binding; INVOLVED IN: proteolysis, ATP-dependent proteolysis; LOCATED IN: cytosol, mitochondrion, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, lon C-terminal (InterPro:IPR008269), Peptidase S16, lon N-terminal (InterPro:IPR003111), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), Peptidase S16, ATP-dependent protease La (InterPro:IPR004815), Peptidase S16, active site (InterPro:IPR008268), Peptidase S16, Lon protease, C-terminal region (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: LON4 (LON PROTEASE 4); ATP binding / ATP-dependent peptidase/ nucleoside-triphosphatase/ nucleotide binding / serine-type endopeptidase/ serine-type peptidase (TAIR:AT3G05790.1); Has 13007 Blast hits to 12893 proteins in 1460 species: Archae - 321; Bacteria - 5455; Metazoa - 654; Fungi - 373; Plants - 243; Viruses - 5; Other Eukaryotes - 5956 (source: NCBI BLink).  protein_id AT5G26860.1p  transcript_id AT5G26860.1  protein_id AT5G26860.1p  transcript_id AT5G26860.1  
At5g26870	chr5:009457301	0.0	C/9457301-9457666	AT5G26870.1  CDS  gene_syn AGAMOUS-LIKE 26, AGL26, F2P16.19, F2P16_19  gene AGL26  function Root Specific  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process cellular response to nitrogen starvation|GO:0006995|16021502|IEP  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL26; transcription factor  note AGL26; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, cellular response to nitrogen starvation; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding / transcription factor (TAIR:AT5G27944.1); Has 308 Blast hits to 307 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 308; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G26870.1p  transcript_id AT5G26870.1  protein_id AT5G26870.1p  transcript_id AT5G26870.1  
At5g26880	chr5:009458921	0.0	C/9458921-9459190,9458775-9458843,9458642-9458700,9458463-9458523,9458338-9458391,9457950-9458228	AT5G26880.1  CDS  gene_syn F2P16.25, F2P16_25  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_function RNA methyltransferase activity|GO:0008173||IEA  go_process RNA processing|GO:0006396||ISS  go_function RNA binding|GO:0003723||ISS  go_function RNA methyltransferase activity|GO:0008173||ISS  product tRNA/rRNA methyltransferase (SpoU) family protein  note tRNA/rRNA methyltransferase (SpoU) family protein; FUNCTIONS IN: RNA binding, RNA methyltransferase activity; INVOLVED IN: RNA processing; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537); Has 3878 Blast hits to 3878 proteins in 1119 species: Archae - 0; Bacteria - 2309; Metazoa - 3; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 1546 (source: NCBI BLink).  protein_id AT5G26880.1p  transcript_id AT5G26880.1  protein_id AT5G26880.1p  transcript_id AT5G26880.1  
At5g26890	chr5:009460465	0.0	W/9460465-9460716	AT5G26890.1  CDS  gene_syn F2P16.150, F2P16_150  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G26890.1p  transcript_id AT5G26890.1  protein_id AT5G26890.1p  transcript_id AT5G26890.1  
At5g26900	chr5:009463752	0.0	W/9463752-9465086	AT5G26900.1  CDS  gene_syn F2P16.8, F2P16_8  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_process signal transduction|GO:0007165||ISS  go_function signal transducer activity|GO:0004871||ISS  product WD-40 repeat family protein  note WD-40 repeat family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: signal transduction; LOCATED IN: heterotrimeric G-protein complex; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein (TAIR:AT5G27080.1); Has 27404 Blast hits to 15145 proteins in 490 species: Archae - 40; Bacteria - 4409; Metazoa - 11993; Fungi - 5129; Plants - 2410; Viruses - 0; Other Eukaryotes - 3423 (source: NCBI BLink).  protein_id AT5G26900.1p  transcript_id AT5G26900.1  protein_id AT5G26900.1p  transcript_id AT5G26900.1  
At5g26910	chr5:009469415	0.0	C/9469415-9469523,9469090-9469139,9467380-9468987,9467087-9467198,9466169-9466851	AT5G26910.1  CDS  gene_syn F2P16.18, F2P16_18  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58650.1); Has 1070 Blast hits to 565 proteins in 119 species: Archae - 4; Bacteria - 320; Metazoa - 171; Fungi - 85; Plants - 92; Viruses - 0; Other Eukaryotes - 398 (source: NCBI BLink).  protein_id AT5G26910.1p  transcript_id AT5G26910.1  protein_id AT5G26910.1p  transcript_id AT5G26910.1  
At5g26910	chr5:009469415	0.0	C/9469415-9469523,9469090-9469139,9467380-9468987,9467097-9467198,9466804-9466851	AT5G26910.2  CDS  gene_syn F2P16.18, F2P16_18  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58650.1); Has 748 Blast hits to 369 proteins in 89 species: Archae - 0; Bacteria - 325; Metazoa - 89; Fungi - 50; Plants - 56; Viruses - 0; Other Eukaryotes - 228 (source: NCBI BLink).  protein_id AT5G26910.2p  transcript_id AT5G26910.2  protein_id AT5G26910.2p  transcript_id AT5G26910.2  
At5g26912	chr5:009471974	0.0	W/9471974-9472111	AT5G26912.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G26912.1p  transcript_id AT5G26912.1  protein_id AT5G26912.1p  transcript_id AT5G26912.1  
At5g26920	chr5:009475860	0.0	W/9475860-9475939,9476046-9476121,9476609-9477140,9477245-9477405,9477502-9477853,9477958-9478448	AT5G26920.1  CDS  gene_syn CAM-BINDING PROTEIN 60-LIKE.G, CBP60G, F2P16.9, F2P16_9  gene CBP60G  function Encodes a calmodulin-binding protein CBP60g (calmodulin binding protein 60-like.g). The calmodulin-binding domain is located near the N-terminus; calmodulin binding is dependent on Ca(2+). Inducible by both bacterial pathogen and MAMP (microbe-associated molecular pattern) treatments. Bacterial growth is enhanced in cbp60g mutants. cbp60g mutants also show defects in salicylic acid (SA) accumulation and SA signaling.  go_process response to molecule of bacterial origin|GO:0002237|19214217|IEP  go_process response to bacterium|GO:0009617|19214217|IEP  go_process salicylic acid biosynthetic process|GO:0009697|19214217|IMP  go_process defense response to bacterium, incompatible interaction|GO:0009816|19214217|IMP  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function calmodulin binding|GO:0005516|19214217|IDA  product CBP60G (CAM-BINDING PROTEIN 60-LIKE.G); calmodulin binding  note CAM-BINDING PROTEIN 60-LIKE.G (CBP60G); FUNCTIONS IN: calmodulin binding; INVOLVED IN: salicylic acid biosynthetic process, defense response to bacterium, incompatible interaction, response to molecule of bacterial origin, response to bacterium; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Calmodulin binding protein-like (InterPro:IPR012416); BEST Arabidopsis thaliana protein match is: calmodulin-binding protein (TAIR:AT4G25800.2); Has 156 Blast hits to 156 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 156; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G26920.1p  transcript_id AT5G26920.1  protein_id AT5G26920.1p  transcript_id AT5G26920.1  
At5g26930	chr5:009479592	0.0	W/9479592-9479732,9479840-9480061	AT5G26930.1  CDS  gene_syn F2P16.190, F2P16_190  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function sequence-specific DNA binding|GO:0043565||IEA  go_function transcription factor activity|GO:0003700||ISS  product zinc finger (GATA type) family protein  note zinc finger (GATA type) family protein; FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GNC (GATA, nitrate-inducible, carbon metabolism-involved); transcription factor (TAIR:AT5G56860.1); Has 747 Blast hits to 729 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 34; Fungi - 316; Plants - 341; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT5G26930.1p  transcript_id AT5G26930.1  protein_id AT5G26930.1p  transcript_id AT5G26930.1  
At5g26940	chr5:009481429	0.0	W/9481429-9481952,9482092-9482297,9482427-9482647	AT5G26940.1  CDS  gene_syn F2P16.200, F2P16_200  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function exonuclease activity|GO:0004527||IEA  go_component intracellular|GO:0005622||ISS  go_function exonuclease activity|GO:0004527||ISS  product exonuclease family protein  note exonuclease family protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T and DNA polymerase III (InterPro:IPR013520); Has 2014 Blast hits to 2014 proteins in 626 species: Archae - 2; Bacteria - 1416; Metazoa - 38; Fungi - 0; Plants - 27; Viruses - 4; Other Eukaryotes - 527 (source: NCBI BLink).  protein_id AT5G26940.1p  transcript_id AT5G26940.1  protein_id AT5G26940.1p  transcript_id AT5G26940.1  
At5g26940	chr5:009481429	0.0	W/9481429-9481952,9482092-9482297,9482427-9482647	AT5G26940.2  CDS  gene_syn F2P16.200, F2P16_200  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function exonuclease activity|GO:0004527||IEA  go_component intracellular|GO:0005622||ISS  go_function exonuclease activity|GO:0004527||ISS  product exonuclease family protein  note exonuclease family protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T and DNA polymerase III (InterPro:IPR013520); Has 2014 Blast hits to 2014 proteins in 626 species: Archae - 2; Bacteria - 1416; Metazoa - 38; Fungi - 0; Plants - 27; Viruses - 4; Other Eukaryotes - 527 (source: NCBI BLink).  protein_id AT5G26940.2p  transcript_id AT5G26940.2  protein_id AT5G26940.2p  transcript_id AT5G26940.2  
At5g26940	chr5:009481429	0.0	W/9481429-9481952,9482092-9482297,9482427-9482647	AT5G26940.3  CDS  gene_syn F2P16.200, F2P16_200  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function exonuclease activity|GO:0004527||IEA  go_component intracellular|GO:0005622||ISS  go_function exonuclease activity|GO:0004527||ISS  product exonuclease family protein  note exonuclease family protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T and DNA polymerase III (InterPro:IPR013520); Has 2014 Blast hits to 2014 proteins in 626 species: Archae - 2; Bacteria - 1416; Metazoa - 38; Fungi - 0; Plants - 27; Viruses - 4; Other Eukaryotes - 527 (source: NCBI BLink).  protein_id AT5G26940.3p  transcript_id AT5G26940.3  protein_id AT5G26940.3p  transcript_id AT5G26940.3  
At5g26940	chr5:009481429	0.0	W/9481429-9481952,9482092-9482297,9482427-9482647	AT5G26940.4  CDS  gene_syn F2P16.200, F2P16_200  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function exonuclease activity|GO:0004527||IEA  go_component intracellular|GO:0005622||ISS  go_function exonuclease activity|GO:0004527||ISS  product exonuclease family protein  note exonuclease family protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T and DNA polymerase III (InterPro:IPR013520); Has 2014 Blast hits to 2014 proteins in 626 species: Archae - 2; Bacteria - 1416; Metazoa - 38; Fungi - 0; Plants - 27; Viruses - 4; Other Eukaryotes - 527 (source: NCBI BLink).  protein_id AT5G26940.4p  transcript_id AT5G26940.4  protein_id AT5G26940.4p  transcript_id AT5G26940.4  
At5g26950	chr5:009483251	0.0	C/9483251-9484120	AT5G26950.1  CDS  gene_syn AGL93, F2P16.17, F2P16_17  gene AGL93  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL93; transcription factor  note AGL93; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL53; transcription factor (TAIR:AT5G27070.1); Has 359 Blast hits to 358 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 359; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G26950.1p  transcript_id AT5G26950.1  protein_id AT5G26950.1p  transcript_id AT5G26950.1  
At5g26960	chr5:009484908	0.0	C/9484908-9486149	AT5G26960.1  CDS  gene_syn F2P16.220, F2P16_220  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch-type beta propeller (InterPro:IPR015915); Has 5871 Blast hits to 3194 proteins in 165 species: Archae - 8; Bacteria - 165; Metazoa - 4835; Fungi - 5; Plants - 617; Viruses - 44; Other Eukaryotes - 197 (source: NCBI BLink).  protein_id AT5G26960.1p  transcript_id AT5G26960.1  protein_id AT5G26960.1p  transcript_id AT5G26960.1  
At5g26970	chr5:009487060	0.0	C/9487060-9487386	AT5G26970.1  CDS  gene_syn F2P16.230, F2P16_230  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G26970.1p  transcript_id AT5G26970.1  protein_id AT5G26970.1p  transcript_id AT5G26970.1  
At5g26980	chr5:009490405	0.0	C/9490405-9490604,9489944-9490220,9489755-9489844,9489450-9489521,9489279-9489353,9489096-9489161,9488923-9489003,9488724-9488831	AT5G26980.1  CDS  gene_syn ATSYP41, ATTLG2A, F2P16.16, F2P16_16, SYNTAXIN OF PLANTS 41, SYP41  gene SYP41  function member of SYP4 Gene Family  go_component trans-Golgi network|GO:0005802|10888666|IDA  go_component trans-Golgi network|GO:0005802|11115874|TAS  go_component trans-Golgi network transport vesicle|GO:0030140|11115874|TAS  go_process intracellular protein transport|GO:0006886|11115874|TAS  go_process membrane fusion|GO:0006944|11115874|TAS  go_function SNAP receptor activity|GO:0005484|11115874|TAS  product SYP41 (SYNTAXIN OF PLANTS 41); SNAP receptor  note SYNTAXIN OF PLANTS 41 (SYP41); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion, intracellular protein transport; LOCATED IN: trans-Golgi network, trans-Golgi network transport vesicle; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: SYP43 (SYNTAXIN OF PLANTS 43); SNAP receptor (TAIR:AT3G05710.2); Has 1727 Blast hits to 1718 proteins in 196 species: Archae - 0; Bacteria - 20; Metazoa - 823; Fungi - 335; Plants - 214; Viruses - 0; Other Eukaryotes - 335 (source: NCBI BLink).  protein_id AT5G26980.1p  transcript_id AT5G26980.1  protein_id AT5G26980.1p  transcript_id AT5G26980.1  
At5g26980	chr5:009490405	0.0	C/9490405-9490604,9489944-9490220,9489755-9489844,9489450-9489521,9489279-9489353,9489096-9489161,9488923-9489003,9488724-9488831	AT5G26980.2  CDS  gene_syn ATSYP41, ATTLG2A, F2P16.16, F2P16_16, SYNTAXIN OF PLANTS 41, SYP41  gene SYP41  function member of SYP4 Gene Family  go_component trans-Golgi network|GO:0005802|10888666|IDA  go_component trans-Golgi network|GO:0005802|11115874|TAS  go_component trans-Golgi network transport vesicle|GO:0030140|11115874|TAS  go_process intracellular protein transport|GO:0006886|11115874|TAS  go_process membrane fusion|GO:0006944|11115874|TAS  go_function SNAP receptor activity|GO:0005484|11115874|TAS  product SYP41 (SYNTAXIN OF PLANTS 41); SNAP receptor  note SYNTAXIN OF PLANTS 41 (SYP41); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion, intracellular protein transport; LOCATED IN: trans-Golgi network, trans-Golgi network transport vesicle; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: SYP43 (SYNTAXIN OF PLANTS 43); SNAP receptor (TAIR:AT3G05710.2); Has 1727 Blast hits to 1718 proteins in 196 species: Archae - 0; Bacteria - 20; Metazoa - 823; Fungi - 335; Plants - 214; Viruses - 0; Other Eukaryotes - 335 (source: NCBI BLink).  protein_id AT5G26980.2p  transcript_id AT5G26980.2  protein_id AT5G26980.2p  transcript_id AT5G26980.2  
At5g26990	chr5:009491366	0.0	W/9491366-9491441,9492200-9492342,9492620-9492697,9493018-9493280,9493531-9493639	AT5G26990.1  CDS  gene_syn F2P16.10, F2P16_10  go_process response to water deprivation|GO:0009414||ISS  product drought-responsive family protein  note drought-responsive family protein; INVOLVED IN: response to water deprivation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Drought induced 19 (InterPro:IPR008598); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05700.1); Has 129 Blast hits to 129 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G26990.1p  transcript_id AT5G26990.1  protein_id AT5G26990.1p  transcript_id AT5G26990.1  
At5g27000	chr5:009498099	0.0	W/9498099-9498228,9498434-9498600,9498664-9498798,9498882-9499106,9499190-9499261,9499439-9499507,9499605-9499805,9499939-9500020,9500109-9500204,9500313-9500492,9500581-9500687,9500787-9500965,9501059-9501220,9501308-9501561,9501648-9501811,9501932-9502126,9502245-9502471,9502551-9502754,9502837-9502951	AT5G27000.1  CDS  gene_syn ARABIDOPSIS THALIANA KINESIN 4, ATK4, F2P16.12, F2P16_12, KATD, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D  gene ATK4  function Encodes a kinesin-like protein that binds microtubules in an ATP-dependent manner.  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||ISS  go_function microtubule binding|GO:0008017|10196470|IDA  go_function ATPase activity|GO:0016887|10196470|IDA  product ATK4 (ARABIDOPSIS THALIANA KINESIN 4); ATPase/ microtubule binding / microtubule motor  note ARABIDOPSIS THALIANA KINESIN 4 (ATK4); FUNCTIONS IN: microtubule binding, microtubule motor activity, ATPase activity; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATP binding / microtubule motor (TAIR:AT2G47500.1); Has 8330 Blast hits to 7944 proteins in 324 species: Archae - 0; Bacteria - 24; Metazoa - 4408; Fungi - 925; Plants - 918; Viruses - 0; Other Eukaryotes - 2055 (source: NCBI BLink).  protein_id AT5G27000.1p  transcript_id AT5G27000.1  protein_id AT5G27000.1p  transcript_id AT5G27000.1  
At5g27010	chr5:009507513	0.0	C/9507513-9507569,9507368-9507440,9507172-9507294,9506916-9507082,9506620-9506772,9506394-9506537,9506187-9506247,9505778-9506091,9505584-9505694,9505403-9505507,9505223-9505309,9505017-9505133,9504833-9504938,9504603-9504734,9504389-9504523,9504122-9504273,9503902-9504042,9503489-9503806,9503315-9503410	AT5G27010.1  CDS  gene_syn F2P16.15, F2P16_15  go_function binding|GO:0005488||IEA  product binding  note binding; FUNCTIONS IN: binding; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT5G06350.1); Has 203 Blast hits to 194 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 92; Fungi - 71; Plants - 24; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT5G27010.1p  transcript_id AT5G27010.1  protein_id AT5G27010.1p  transcript_id AT5G27010.1  
At5g27020	chr5:009508187	0.0	W/9508187-9508681	AT5G27020.1  CDS  gene_syn F2P16.13, F2P16_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G27020.1p  transcript_id AT5G27020.1  protein_id AT5G27020.1p  transcript_id AT5G27020.1  
At5g27030	chr5:009515184	0.0	C/9515184-9515263,9514918-9515097,9514723-9514836,9514343-9514501,9514066-9514240,9513849-9513978,9513639-9513751,9513417-9513552,9513203-9513312,9512976-9513045,9512824-9512897,9512651-9512746,9512486-9512578,9512194-9512321,9511772-9512006,9511525-9511686,9511353-9511427,9511013-9511147,9510810-9510920,9510513-9510692,9510261-9510389,9509964-9510059,9509615-9509797,9509289-9509452,9508913-9509111	AT5G27030.1  CDS  gene_syn F2P16.14, F2P16_14, TOPLESS-RELATED 3, TPR3  gene TPR3  go_component endomembrane system|GO:0012505||IEA  go_process primary shoot apical meristem specification|GO:0010072|16763149|IGI  product TPR3 (TOPLESS-RELATED 3)  note TOPLESS-RELATED 3 (TPR3); INVOLVED IN: primary shoot apical meristem specification; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594); BEST Arabidopsis thaliana protein match is: TPR2 (TOPLESS-RELATED 2) (TAIR:AT3G16830.1); Has 10032 Blast hits to 6372 proteins in 376 species: Archae - 24; Bacteria - 2655; Metazoa - 3380; Fungi - 1755; Plants - 716; Viruses - 0; Other Eukaryotes - 1502 (source: NCBI BLink).  protein_id AT5G27030.1p  transcript_id AT5G27030.1  protein_id AT5G27030.1p  transcript_id AT5G27030.1  
At5g27035	chr5:009516470	0.0	C/9516470-9516708	AT5G27035.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 6.6e-16 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element)  
At5g27037	chr5:009517436	0.0	W/9517436-9518141	AT5G27037.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At5g27043	chr5:009519656	0.0	C/9519656-9520055	AT5G27043.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At5g27050	chr5:009520276	0.0	W/9520276-9520638	AT5G27050.1  CDS  gene_syn AGL101, F15P11.2, F15P11_2  gene AGL101  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL101; transcription factor  note AGL101; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL89; transcription factor (TAIR:AT5G27580.1); Has 188 Blast hits to 187 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 188; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G27050.1p  transcript_id AT5G27050.1  protein_id AT5G27050.1p  transcript_id AT5G27050.1  
At5g27060	chr5:009522534	0.0	C/9522534-9525407	AT5G27060.1  CDS  gene_syn AtRLP53, F15P11.4, F15P11_4, Receptor Like Protein 53  gene AtRLP53  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  go_function kinase activity|GO:0016301||ISS  product AtRLP53 (Receptor Like Protein 53); kinase/ protein binding  note Receptor Like Protein 53 (AtRLP53); FUNCTIONS IN: protein binding, kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP34 (Receptor Like Protein 34); kinase/ protein binding (TAIR:AT3G11010.1); Has 94603 Blast hits to 23986 proteins in 921 species: Archae - 60; Bacteria - 6055; Metazoa - 33129; Fungi - 1077; Plants - 47038; Viruses - 29; Other Eukaryotes - 7215 (source: NCBI BLink).  protein_id AT5G27060.1p  transcript_id AT5G27060.1  protein_id AT5G27060.1p  transcript_id AT5G27060.1  
At5g27070	chr5:009527741	0.0	W/9527741-9528604	AT5G27070.1  CDS  gene_syn AGL53, F15P11.40, F15P11_40  gene AGL53  go_component plasma membrane|GO:0005886|14506206|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL53; transcription factor  note AGL53; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, plasma membrane; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL93; transcription factor (TAIR:AT5G26950.1); Has 355 Blast hits to 354 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 355; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G27070.1p  transcript_id AT5G27070.1  protein_id AT5G27070.1p  transcript_id AT5G27070.1  
At5g27080	chr5:009529757	0.0	C/9529757-9531081,9529603-9529678	AT5G27080.1  CDS  gene_syn F15P11.5, F15P11_5  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process signal transduction|GO:0007165||ISS  go_function signal transducer activity|GO:0004871||ISS  product WD-40 repeat family protein  note WD-40 repeat family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: signal transduction; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein (TAIR:AT5G26900.1); Has 23036 Blast hits to 13391 proteins in 448 species: Archae - 38; Bacteria - 4148; Metazoa - 9533; Fungi - 4386; Plants - 1988; Viruses - 0; Other Eukaryotes - 2943 (source: NCBI BLink).  protein_id AT5G27080.1p  transcript_id AT5G27080.1  protein_id AT5G27080.1p  transcript_id AT5G27080.1  
At5g27090	chr5:009531845	0.0	W/9531845-9532084,9532175-9532408	AT5G27090.2  CDS  gene_syn AGL54, F15P11.1, F15P11_1  gene AGL54  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL54; transcription factor  note AGL54; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL53; transcription factor (TAIR:AT5G27070.1); Has 124 Blast hits to 123 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G27090.2p  transcript_id AT5G27090.2  protein_id AT5G27090.2p  transcript_id AT5G27090.2  
At5g27090	chr5:009531845	0.0	W/9531845-9532408	AT5G27090.1  CDS  gene_syn AGL54, F15P11.1, F15P11_1  gene AGL54  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL54; transcription factor  note AGL54; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL53; transcription factor (TAIR:AT5G27070.1); Has 408 Blast hits to 406 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 408; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G27090.1p  transcript_id AT5G27090.1  protein_id AT5G27090.1p  transcript_id AT5G27090.1  
At5g27095	chr5:009532982	0.0	W/9532982-9533649	AT5G27095.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At5g27100	chr5:009538050	0.0	C/9538050-9538311,9536586-9537889,9536178-9536490,9535662-9536065,9535160-9535582	AT5G27100.1  CDS  gene_syn ATGLR2.1, GLR2.1, GLUTAMATE RECEPTOR 2.1, T21B4.10, T21B4_10  gene ATGLR2.1  function member of Putative ligand-gated ion channel subunit family  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process cellular calcium ion homeostasis|GO:0006874|11379626|NAS  go_process response to light stimulus|GO:0009416|11379626|NAS  go_function intracellular ligand-gated ion channel activity|GO:0005217||ISS  product ATGLR2.1; intracellular ligand-gated ion channel  note ATGLR2.1; FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: ATGLR2.2; intracellular ligand-gated ion channel (TAIR:AT2G24720.1); Has 4358 Blast hits to 4281 proteins in 500 species: Archae - 56; Bacteria - 899; Metazoa - 2849; Fungi - 0; Plants - 322; Viruses - 0; Other Eukaryotes - 232 (source: NCBI BLink).  protein_id AT5G27100.1p  transcript_id AT5G27100.1  protein_id AT5G27100.1p  transcript_id AT5G27100.1  
At5g27110	chr5:009538572	0.0	C/9538572-9540647	AT5G27110.1  CDS  gene_syn T21B4.20, T21B4_20  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: DOT4 (DEFECTIVELY ORGANIZED TRIBUTARIES 4) (TAIR:AT4G18750.1); Has 17057 Blast hits to 5341 proteins in 186 species: Archae - 0; Bacteria - 8; Metazoa - 168; Fungi - 118; Plants - 16284; Viruses - 0; Other Eukaryotes - 479 (source: NCBI BLink).  protein_id AT5G27110.1p  transcript_id AT5G27110.1  protein_id AT5G27110.1p  transcript_id AT5G27110.1  
At5g27120	chr5:009541287	0.0	W/9541287-9541364,9541465-9541506,9541596-9541775,9541852-9542016,9542211-9542411,9542499-9542996,9543097-9543231,9543382-9543684	AT5G27120.1  CDS  function SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; has similarity to MAR binding NOP58 protein  go_component nucleolus|GO:0005730|15496452|IDA  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product SAR DNA-binding protein, putative  note SAR DNA-binding protein, putative; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; CONTAINS InterPro DOMAIN/s: Pre-mRNA processing ribonucleoprotein, binding region (InterPro:IPR002687), NOP5, N-terminal (InterPro:IPR012974), NOSIC (InterPro:IPR012976); BEST Arabidopsis thaliana protein match is: SAR DNA-binding protein, putative (TAIR:AT3G05060.1); Has 32357 Blast hits to 14546 proteins in 792 species: Archae - 171; Bacteria - 1924; Metazoa - 13076; Fungi - 3400; Plants - 1312; Viruses - 165; Other Eukaryotes - 12309 (source: NCBI BLink).  protein_id AT5G27120.1p  transcript_id AT5G27120.1  protein_id AT5G27120.1p  transcript_id AT5G27120.1  
At5g27130	chr5:009546633	0.0	W/9546633-9547553	AT5G27130.1  CDS  gene_syn AGAMOUS LIKE 39, AGL39, T21B4.40, T21B4_40  gene AGL39  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL39 (AGAMOUS LIKE 39); DNA binding / transcription factor  note AGAMOUS LIKE 39 (AGL39); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: MADS-box protein (AGL74 ) (TAIR:AT1G48150.1); Has 373 Blast hits to 373 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 36; Plants - 335; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G27130.1p  transcript_id AT5G27130.1  protein_id AT5G27130.1p  transcript_id AT5G27130.1  
At5g27140	chr5:009548542	0.0	W/9548542-9548619,9548721-9548765,9548819-9548911,9548991-9549155,9549242-9549436,9549533-9550030,9550102-9550297,9550530-9550597	AT5G27140.1  CDS  gene_syn T21B4.50, T21B4_50  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product SAR DNA-binding protein, putative  note SAR DNA-binding protein, putative; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Pre-mRNA processing ribonucleoprotein, binding region (InterPro:IPR002687), NOP5, N-terminal (InterPro:IPR012974), NOSIC (InterPro:IPR012976); BEST Arabidopsis thaliana protein match is: SAR DNA-binding protein, putative (TAIR:AT5G27120.1); Has 1322 Blast hits to 1296 proteins in 268 species: Archae - 122; Bacteria - 5; Metazoa - 416; Fungi - 311; Plants - 120; Viruses - 1; Other Eukaryotes - 347 (source: NCBI BLink).  protein_id AT5G27140.1p  transcript_id AT5G27140.1  protein_id AT5G27140.1p  transcript_id AT5G27140.1  
At5g27150	chr5:009554251	0.0	W/9554251-9554415,9554488-9554606,9555028-9555125,9555237-9555296,9555384-9555430,9555523-9555717,9555807-9555853,9555944-9556010,9556097-9556197,9556287-9556527,9556616-9556678,9556760-9556843,9556937-9557266	AT5G27150.1  CDS  gene_syn AT-NHX1, ATNHX, ATNHX1, NA(+)/H(+) ANTIPORTER, NA+/H+ EXCHANGER, NHX1, T21B4.60, T21B4_60  gene NHX1  function Encodes a vacuolar sodium/proton antiporter involved in salt tolerance, ion homeostasis, and leaf development.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plant-type vacuole|GO:0000325|10455050|TAS  go_component vacuole|GO:0005773|9990049|IDA  go_component vacuolar membrane|GO:0005774|11500563|TAS  go_process sodium ion transport|GO:0006814|11500563|IC  go_process sodium ion transport|GO:0006814|9990049|IGI  go_process response to salt stress|GO:0009651|10455050|IMP  go_process response to salt stress|GO:0009651|11500563|TAS  go_process lithium ion transport|GO:0010351|9990049|IGI  go_process leaf development|GO:0048366|14535887|IMP  go_function protein binding|GO:0005515|16249341|IPI  go_function sodium ion transmembrane transporter activity|GO:0015081|9990049|IGI  go_function sodium ion transmembrane transporter activity|GO:0015081||ISS  go_function sodium:hydrogen antiporter activity|GO:0015385|11500563|TAS  go_function sodium:hydrogen antiporter activity|GO:0015385|11707435|IDA  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product NHX1 (NA+/H+ EXCHANGER); protein binding / sodium ion transmembrane transporter/ sodium:hydrogen antiporter  note NA+/H+ EXCHANGER (NHX1); FUNCTIONS IN: protein binding, sodium:hydrogen antiporter activity, sodium ion transmembrane transporter activity; INVOLVED IN: response to salt stress, lithium ion transport, sodium ion transport, leaf development; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Na+/H+ exchanger, subfamily (InterPro:IPR004709), Cation/H+ exchanger, conserved region (InterPro:IPR018422), Cation/H+ exchanger (InterPro:IPR006153), Na+/H+ exchanger, isoforms 1-4, conserved region (InterPro:IPR018407), Na+/H+ exchanger, conserved region (InterPro:IPR018406); BEST Arabidopsis thaliana protein match is: NHX2 (SODIUM HYDROGEN EXCHANGER 2); sodium ion transmembrane transporter/ sodium:hydrogen antiporter (TAIR:AT3G05030.1); Has 3502 Blast hits to 3495 proteins in 944 species: Archae - 29; Bacteria - 2051; Metazoa - 722; Fungi - 92; Plants - 281; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink).  protein_id AT5G27150.1p  transcript_id AT5G27150.1  protein_id AT5G27150.1p  transcript_id AT5G27150.1  
At5g27160	chr5:009562596	0.0	W/9562596-9565841	AT5G27160.1  mRNA_TE_gene  pseudo  gene_syn T21B4.70, T21B4_70  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07520.1); similar to PREDICTED: hypothetical protein [Rattus norve (GB:XP_001067658.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048)  
At5g27170	chr5:009566007	0.0	W/9566007-9566072,9566167-9566412	AT5G27170.1  CDS  gene_syn T21B4.80, T21B4_80  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G27170.1p  transcript_id AT5G27170.1  protein_id AT5G27170.1p  transcript_id AT5G27170.1  
At5g27180	chr5:009566763	0.0	C/9566763-9567176	AT5G27180.1  mRNA_TE_gene  pseudo  gene_syn T21B4.90, T21B4_90  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07523.1)  
At5g27190	chr5:009567920	0.0	C/9567920-9571164	AT5G27190.1  mRNA_TE_gene  pseudo  gene_syn T21B4.100, T21B4_100  note Transposable element gene, Mutator-like transposase family, has a 1.3e-76 P-value blast match to O22278 /203-375 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At5g27200	chr5:009571185	0.0	W/9571185-9571232,9571457-9571576,9571661-9571783,9571861-9571989	AT5G27200.1  CDS  gene_syn ACP5, A_TM021B04.6, T21B4.110, T21B4_110, acyl carrier protein 5  gene ACP5  function encodes an acyl carrier protein  go_component chloroplast|GO:0009507||IEA  go_process fatty acid biosynthetic process|GO:0006633||ISS  go_process fatty acid biosynthetic process|GO:0006633||TAS  go_function acyl carrier activity|GO:0000036|11788768|ISS  go_function acyl carrier activity|GO:0000036||ISS  product ACP5 (acyl carrier protein 5); acyl carrier  note acyl carrier protein 5 (ACP5); FUNCTIONS IN: acyl carrier activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Phosphopantetheine-binding (InterPro:IPR006163), Acyl carrier protein (ACP) (InterPro:IPR003231), Acyl carrier protein-like (InterPro:IPR009081), Phosphopantetheine attachment site (InterPro:IPR006162); BEST Arabidopsis thaliana protein match is: ACP1 (acyl carrier protein 1); acyl carrier (TAIR:AT3G05020.1); Has 4618 Blast hits to 4618 proteins in 1310 species: Archae - 0; Bacteria - 2523; Metazoa - 37; Fungi - 89; Plants - 241; Viruses - 2; Other Eukaryotes - 1726 (source: NCBI BLink).  protein_id AT5G27200.1p  transcript_id AT5G27200.1  protein_id AT5G27200.1p  transcript_id AT5G27200.1  
At5g27210	chr5:009573800	0.0	C/9573800-9574075,9573165-9573356,9572841-9573003,9572648-9572750,9572482-9572563,9572333-9572410	AT5G27210.1  CDS  gene_syn T21B4.120, T21B4_120  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function, transmembrane-40 (InterPro:IPR018781); BEST Arabidopsis thaliana protein match is: transmembrane protein, putative (TAIR:AT3G05010.1); Has 99 Blast hits to 99 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 71; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G27210.1p  transcript_id AT5G27210.1  protein_id AT5G27210.1p  transcript_id AT5G27210.1  
At5g27220	chr5:009578757	0.0	W/9578757-9581166,9581417-9581992,9582102-9582262,9582354-9582752	AT5G27220.1  CDS  gene_syn T21B4.130, T21B4_130  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product protein transport protein-related  note protein transport protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: LINC1 (LITTLE NUCLEI1) (TAIR:AT1G67230.1); Has 148764 Blast hits to 65683 proteins in 2162 species: Archae - 1882; Bacteria - 21069; Metazoa - 71378; Fungi - 10194; Plants - 5324; Viruses - 655; Other Eukaryotes - 38262 (source: NCBI BLink).  protein_id AT5G27220.1p  transcript_id AT5G27220.1  protein_id AT5G27220.1p  transcript_id AT5G27220.1  
At5g27230	chr5:009584255	0.0	W/9584255-9585287,9585370-9585551,9585668-9585962,9586239-9586829,9587003-9587181,9587272-9587838	AT5G27230.1  CDS  gene_syn T21B4.140, T21B4_140  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G22440.1); Has 7968 Blast hits to 5791 proteins in 512 species: Archae - 158; Bacteria - 808; Metazoa - 2750; Fungi - 421; Plants - 1028; Viruses - 76; Other Eukaryotes - 2727 (source: NCBI BLink).  protein_id AT5G27230.1p  transcript_id AT5G27230.1  protein_id AT5G27230.1p  transcript_id AT5G27230.1  
At5g27238	chr5:009593983	0.0	C/9593983-9594390	AT5G27238.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: self-incompatibility protein-related (TAIR:AT2G06090.1); Has 47 Blast hits to 47 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G27238.1p  transcript_id AT5G27238.1  protein_id AT5G27238.1p  transcript_id AT5G27238.1  
At5g27240	chr5:009597552	0.0	W/9597552-9600866	AT5G27240.1  CDS  gene_syn T21B4.150, T21B4_150  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT3G04980.1); Has 10131 Blast hits to 9740 proteins in 1579 species: Archae - 61; Bacteria - 3554; Metazoa - 2384; Fungi - 568; Plants - 914; Viruses - 13; Other Eukaryotes - 2637 (source: NCBI BLink).  protein_id AT5G27240.1p  transcript_id AT5G27240.1  protein_id AT5G27240.1p  transcript_id AT5G27240.1  
At5g27247	chr5:009601443	0.0	C/9601443-9601589	AT5G27247.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G27247.1p  transcript_id AT5G27247.1  protein_id AT5G27247.1p  transcript_id AT5G27247.1  
At5g27250	chr5:009601673	0.0	W/9601673-9603014	AT5G27250.1  mRNA_TE_gene  pseudo  gene_syn F21A20.4  note Transposable element gene, transposase IS4 family protein, contains Pfam profile: PF01609 transposase DDE domain  
At5g27260	chr5:009603943	0.0	W/9603943-9604287,9604364-9604930	AT5G27260.1  CDS  gene_syn F21A20.5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29880.1); Has 192 Blast hits to 164 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 186; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G27260.1p  transcript_id AT5G27260.1  protein_id AT5G27260.1p  transcript_id AT5G27260.1  
At5g27270	chr5:009605650	0.0	W/9605650-9606192,9606278-9607679,9607777-9608088,9608333-9608437,9608521-9608608,9608701-9608822,9608966-9609030,9609146-9609625	AT5G27270.1  CDS  gene_syn EMB976, EMBRYO DEFECTIVE 976, F21A20.6  gene EMB976  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product EMB976 (EMBRYO DEFECTIVE 976)  note EMBRYO DEFECTIVE 976 (EMB976); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: PGR3 (PROTON GRADIENT REGULATION 3) (TAIR:AT4G31850.1); Has 29581 Blast hits to 5939 proteins in 208 species: Archae - 4; Bacteria - 59; Metazoa - 599; Fungi - 472; Plants - 27208; Viruses - 0; Other Eukaryotes - 1239 (source: NCBI BLink).  protein_id AT5G27270.1p  transcript_id AT5G27270.1  protein_id AT5G27270.1p  transcript_id AT5G27270.1  
At5g27280	chr5:009617548	0.0	W/9617548-9617674,9617778-9617857,9617938-9618369	AT5G27280.1  CDS  gene_syn F21A20.2  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product zinc finger (DNL type) family protein  note zinc finger (DNL type) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Zim17-type (InterPro:IPR007853); BEST Arabidopsis thaliana protein match is: zinc finger (DNL type) family protein (TAIR:AT1G68730.1); Has 258 Blast hits to 258 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 69; Plants - 60; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT5G27280.1p  transcript_id AT5G27280.1  protein_id AT5G27280.1p  transcript_id AT5G27280.1  
At5g27290	chr5:009620225	0.0	C/9620225-9620473,9619589-9619807,9619431-9619517,9619180-9619326,9619056-9619082,9618869-9618964,9618590-9618790	AT5G27290.1  CDS  gene_syn F21A20.3  go_component chloroplast|GO:0009507|18431481|IDA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54680.2); Has 158 Blast hits to 154 proteins in 46 species: Archae - 0; Bacteria - 60; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT5G27290.1p  transcript_id AT5G27290.1  protein_id AT5G27290.1p  transcript_id AT5G27290.1  
At5g27290	chr5:009620225	0.0	C/9620225-9620473,9619589-9619807,9619431-9619517,9619180-9619326,9619056-9619082,9618909-9618964,9618787-9618790	AT5G27290.2  CDS  gene_syn F21A20.3  go_component chloroplast|GO:0009507|18431481|IDA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54680.2); Has 126 Blast hits to 122 proteins in 38 species: Archae - 0; Bacteria - 46; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G27290.2p  transcript_id AT5G27290.2  protein_id AT5G27290.2p  transcript_id AT5G27290.2  
At5g27300	chr5:009620810	0.0	W/9620810-9620966,9621247-9621552,9621651-9621881,9621985-9622274,9622420-9622444,9622536-9622581,9622659-9622742,9622824-9622904,9623939-9624066,9624385-9624466,9624563-9624626,9624734-9624796,9624895-9624990	AT5G27300.2  CDS  gene_syn F21A20.10, F21A20_10  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G27800.1).  protein_id AT5G27300.2p  transcript_id AT5G27300.2  protein_id AT5G27300.2p  transcript_id AT5G27300.2  
At5g27300	chr5:009620810	0.0	W/9620810-9620979,9621101-9621162,9621247-9621552,9621651-9621881,9621985-9622274,9622420-9622444,9622536-9622581,9622659-9622742,9622824-9622904,9623939-9624066,9624385-9624466,9624563-9624626,9624734-9624796,9624895-9624990	AT5G27300.1  CDS  gene_syn F21A20.10, F21A20_10  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G27800.1); Has 7681 Blast hits to 2370 proteins in 97 species: Archae - 2; Bacteria - 0; Metazoa - 93; Fungi - 4; Plants - 7452; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink).  protein_id AT5G27300.1p  transcript_id AT5G27300.1  protein_id AT5G27300.1p  transcript_id AT5G27300.1  
At5g27310	chr5:009625449	0.0	W/9625449-9626561	AT5G27310.1  CDS  gene_syn F21A20.20, F21A20_20  go_component plasma membrane|GO:0005886|17151019|IDA  go_process transcription|GO:0006350||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transcription; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: TFIIS N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G27780.1); Has 410 Blast hits to 363 proteins in 79 species: Archae - 0; Bacteria - 42; Metazoa - 102; Fungi - 14; Plants - 69; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink).  protein_id AT5G27310.1p  transcript_id AT5G27310.1  protein_id AT5G27310.1p  transcript_id AT5G27310.1  
At5g27320	chr5:009629254	0.0	W/9629254-9629292,9629751-9630746	AT5G27320.1  CDS  gene_syn ATGID1C, F21A20.30, F21A20_30, GA INSENSITIVE DWARF1C, GID1C  gene GID1C  function Encodes a gibberellin (GA) receptor ortholog of the rice GA receptor gene (OsGID1). Has GA-binding activity, showing higher affinity to GA4. Interacts with DELLA proteins in vivo in the presence of GA4.  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process response to gibberellin stimulus|GO:0009739|18827182|IGI  go_process positive regulation of gibberellic acid mediated signaling|GO:0009939|17194763|IGI  go_process raffinose family oligosaccharide biosynthetic process|GO:0010325|16709201|IGI  go_process gibberellin-mediated signaling|GO:0010476|17521411|IGI  go_process floral organ morphogenesis|GO:0048444|17194763|IGI  product GID1C (GA INSENSITIVE DWARF1C); hydrolase  note GA INSENSITIVE DWARF1C (GID1C); FUNCTIONS IN: hydrolase activity; INVOLVED IN: raffinose family oligosaccharide biosynthetic process, floral organ morphogenesis, positive regulation of gibberellic acid mediated signaling, response to gibberellin stimulus, gibberellin-mediated signaling; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDXG, active site (InterPro:IPR002168), Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: GID1A (GA INSENSITIVE DWARF1A); hydrolase (TAIR:AT3G05120.1); Has 5367 Blast hits to 5358 proteins in 858 species: Archae - 47; Bacteria - 2902; Metazoa - 391; Fungi - 448; Plants - 647; Viruses - 3; Other Eukaryotes - 929 (source: NCBI BLink).  protein_id AT5G27320.1p  transcript_id AT5G27320.1  protein_id AT5G27320.1p  transcript_id AT5G27320.1  
At5g27330	chr5:009632997	0.0	C/9632997-9634883	AT5G27330.1  CDS  gene_syn F21A20.40, F21A20_40  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  product unknown protein  note LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05130.1); Has 110457 Blast hits to 56483 proteins in 2051 species: Archae - 1653; Bacteria - 15111; Metazoa - 52441; Fungi - 7858; Plants - 4309; Viruses - 584; Other Eukaryotes - 28501 (source: NCBI BLink).  protein_id AT5G27330.1p  transcript_id AT5G27330.1  protein_id AT5G27330.1p  transcript_id AT5G27330.1  
At5g27340	chr5:009635885	0.0	W/9635885-9635977,9636101-9636205,9636318-9636682,9636731-9636884	AT5G27340.1  CDS  gene_syn F21A20.50, F21A20_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G27340.1p  transcript_id AT5G27340.1  protein_id AT5G27340.1p  transcript_id AT5G27340.1  
At5g27345	chr5:009641505	0.0	C/9641505-9643917	AT5G27345.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 4.0e-48 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At5g27350	chr5:009648958	0.0	W/9648958-9649101,9649244-9649306,9650451-9650540,9650673-9650732,9650873-9650938,9651024-9651089,9651258-9651333,9651481-9651545,9651645-9651737,9651879-9651959,9652052-9652136,9652504-9652547,9652923-9652985,9653070-9653129,9653220-9653273,9653382-9653441,9653543-9653657,9654037-9654176	AT5G27350.1  CDS  gene_syn F21A20.60, F21A20_60, SFP1  gene SFP1  function Encodes a sugar-porter family protein that is induced during leaf senescence. The increase in its gene expression during leaf senescence is paralleled by an accumulation of monosaccharides.  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  go_process response to nematode|GO:0009624|16478044|IEP  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product SFP1; carbohydrate transmembrane transporter/ sugar:hydrogen symporter  note SFP1; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: response to nematode; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: SFP2; carbohydrate transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT5G27360.1); Has 16720 Blast hits to 16382 proteins in 1090 species: Archae - 221; Bacteria - 5538; Metazoa - 4340; Fungi - 4206; Plants - 1516; Viruses - 0; Other Eukaryotes - 899 (source: NCBI BLink).  protein_id AT5G27350.1p  transcript_id AT5G27350.1  protein_id AT5G27350.1p  transcript_id AT5G27350.1  
At5g27360	chr5:009657119	0.0	W/9657119-9657274,9657829-9657891,9658588-9658677,9658831-9658890,9659030-9659095,9659205-9659270,9659590-9659665,9659836-9659900,9660005-9660097,9660212-9660292,9660389-9660473,9660851-9660894,9661175-9661237,9661333-9661392,9661472-9661525,9661614-9661673,9661770-9661884,9662286-9662425	AT5G27360.1  CDS  gene_syn F21A20.70, F21A20_70, SFP2  gene SFP2  function Encodes a sugar-porter family protein that unlike the closely related gene, SFP1, is not induced during leaf senescence.  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product SFP2; carbohydrate transmembrane transporter/ sugar:hydrogen symporter  note SFP2; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: SFP1; carbohydrate transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT5G27350.1); Has 17269 Blast hits to 16914 proteins in 1126 species: Archae - 232; Bacteria - 5844; Metazoa - 4522; Fungi - 4219; Plants - 1472; Viruses - 0; Other Eukaryotes - 980 (source: NCBI BLink).  protein_id AT5G27360.1p  transcript_id AT5G27360.1  protein_id AT5G27360.1p  transcript_id AT5G27360.1  
At5g27370	chr5:009667311	0.0	W/9667311-9667886	AT5G27370.1  CDS  gene_syn F21A20.80, F21A20_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF679 (InterPro:IPR007770); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G18425.1); Has 151 Blast hits to 144 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G27370.1p  transcript_id AT5G27370.1  protein_id AT5G27370.1p  transcript_id AT5G27370.1  
At5g27380	chr5:009670604	0.0	C/9670604-9670912,9670210-9670379,9670051-9670126,9669835-9669965,9669630-9669752,9669467-9669547,9669278-9669358,9669126-9669195,9668916-9669037,9668696-9668835,9668425-9668617,9668211-9668334	AT5G27380.1  CDS  gene_syn F21A20.90, F21A20_90, GLUTATHIONE SYNTHETASE, GLUTATHIONE SYNTHETASE 2, GSH2, GSHB  gene GSH2  function Encodes a protein with similarity to glutathione synthetases, which catalyzes one of the early steps in glutathione biosynthesis. Two transcripts have been detected; the longer transcript is less abundant and the protein is localized to the chloroplast. The smaller transcript, in which the transit peptide is truncated, is localized to the cytosol.  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cytosol|GO:0005829|15610346|IDA  go_component cytosol|GO:0005829|8612643|TAS  go_component chloroplast|GO:0009507|15610346|IDA  go_process glutathione biosynthetic process|GO:0006750|15302873|IDA  go_process glutathione biosynthetic process|GO:0006750|8914526|IGI  go_process response to jasmonic acid stimulus|GO:0009753|16262714|IEP  go_function glutathione synthase activity|GO:0004363|15302873|IDA  go_function glutathione synthase activity|GO:0004363|8521973|IGI  go_function glutathione synthase activity|GO:0004363|8914526|IGI  product GSH2 (GLUTATHIONE SYNTHETASE 2); glutathione synthase  note GLUTATHIONE SYNTHETASE 2 (GSH2); FUNCTIONS IN: glutathione synthase activity; INVOLVED IN: response to jasmonic acid stimulus, N-terminal protein myristoylation, glutathione biosynthetic process; LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PreATP-grasp-like fold (InterPro:IPR016185), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), Glutathione synthase, eukaryotic (InterPro:IPR005615), Glutathione synthase, substrate-binding, eukaryotic (InterPro:IPR004887), Glutathione synthase, alpha-helical, eukaryotic (InterPro:IPR014042); Has 487 Blast hits to 457 proteins in 178 species: Archae - 0; Bacteria - 39; Metazoa - 176; Fungi - 102; Plants - 75; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT5G27380.1p  transcript_id AT5G27380.1  protein_id AT5G27380.1p  transcript_id AT5G27380.1  
At5g27395	chr5:009674009	0.0	C/9674009-9674085,9673799-9673839,9673641-9673723,9673473-9673553,9673265-9673347,9673045-9673096,9672874-9672963,9672708-9672776,9672505-9672606,9672301-9672369,9672150-9672206,9671845-9671931	AT5G27395.2  CDS  go_component mitochondrion|GO:0005739||IEA  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||IEA  product P-P-bond-hydrolysis-driven protein transmembrane transporter  note P-P-bond-hydrolysis-driven protein transmembrane transporter; FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport; LOCATED IN: mitochondrion, mitochondrial inner membrane presequence translocase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial import inner membrane translocase, subunit Tim44 (InterPro:IPR007379); Has 249 Blast hits to 249 proteins in 90 species: Archae - 0; Bacteria - 92; Metazoa - 76; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT5G27395.2p  transcript_id AT5G27395.2  protein_id AT5G27395.2p  transcript_id AT5G27395.2  
At5g27395	chr5:009674009	0.0	C/9674009-9674085,9673799-9673890,9673641-9673723,9673473-9673553,9673265-9673347,9673045-9673096,9672874-9672963,9672708-9672776,9672505-9672606,9672301-9672369,9672150-9672206,9671845-9671931	AT5G27395.1  CDS  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||IEA  product P-P-bond-hydrolysis-driven protein transmembrane transporter  note P-P-bond-hydrolysis-driven protein transmembrane transporter; FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport; LOCATED IN: mitochondrial inner membrane presequence translocase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial import inner membrane translocase, subunit Tim44 (InterPro:IPR007379); Has 247 Blast hits to 247 proteins in 89 species: Archae - 0; Bacteria - 90; Metazoa - 76; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT5G27395.1p  transcript_id AT5G27395.1  protein_id AT5G27395.1p  transcript_id AT5G27395.1  
At5g27390	chr5:009675816	0.0	C/9675816-9676118,9675429-9675508,9675287-9675347,9675129-9675186,9675000-9675057,9674820-9674892,9674634-9674726	AT5G27390.1  CDS  gene_syn F21A20.100, F21A20_100  go_component chloroplast|GO:0009507|18431481|IDA  product unknown protein  note LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124); Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G27390.1p  transcript_id AT5G27390.1  protein_id AT5G27390.1p  transcript_id AT5G27390.1  
At5g27400	chr5:009676362	0.0	W/9676362-9676456,9676548-9676614,9676771-9676899,9676987-9677050,9677137-9677224,9677303-9677387,9677463-9677519,9677600-9677716,9677809-9677882,9677952-9678285	AT5G27400.1  CDS  gene_syn F21A20.110, F21A20_110  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 806 Blast hits to 806 proteins in 171 species: Archae - 0; Bacteria - 62; Metazoa - 389; Fungi - 161; Plants - 105; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT5G27400.1p  transcript_id AT5G27400.1  protein_id AT5G27400.1p  transcript_id AT5G27400.1  
At5g27410	chr5:009678821	0.0	W/9678821-9678889,9679240-9679338,9679408-9679479,9679578-9679670,9679814-9679951,9680043-9680101,9680192-9680294,9680378-9680566,9680652-9680752,9680822-9680876,9680963-9681049,9681165-9681216,9681309-9681394,9681504-9681557,9681648-9681731,9681833-9681904,9681991-9682071,9682152-9682187,9682319-9682468	AT5G27410.1  CDS  gene_syn F21A20.120, F21A20_120  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_function catalytic activity|GO:0003824||ISS  product aminotransferase class IV family protein  note aminotransferase class IV family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Aminotransferase, class IV, conserved site (InterPro:IPR018300); BEST Arabidopsis thaliana protein match is: aminotransferase class IV family protein (TAIR:AT3G05190.1); Has 9394 Blast hits to 9392 proteins in 1245 species: Archae - 99; Bacteria - 4315; Metazoa - 14; Fungi - 67; Plants - 189; Viruses - 0; Other Eukaryotes - 4710 (source: NCBI BLink).  protein_id AT5G27410.1p  transcript_id AT5G27410.1  protein_id AT5G27410.1p  transcript_id AT5G27410.1  
At5g27420	chr5:009684119	0.0	W/9684119-9685225	AT5G27420.1  CDS  gene_syn F21A20.130, F21A20_130  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process response to abscisic acid stimulus|GO:0009737|16258012|IEP  go_process response to chitin|GO:0010200|17722694|IEP  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: response to chitin, response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: ATL6; protein binding / zinc ion binding (TAIR:AT3G05200.1); Has 6369 Blast hits to 6350 proteins in 217 species: Archae - 0; Bacteria - 0; Metazoa - 2077; Fungi - 469; Plants - 2661; Viruses - 39; Other Eukaryotes - 1123 (source: NCBI BLink).  protein_id AT5G27420.1p  transcript_id AT5G27420.1  protein_id AT5G27420.1p  transcript_id AT5G27420.1  
At5g27430	chr5:009687470	0.0	W/9687470-9687595,9687825-9687872,9688463-9688525,9688651-9688704,9688879-9688965,9689060-9689185	AT5G27430.1  CDS  go_component cell wall|GO:0005618|15593128|IDA  go_process signal peptide processing|GO:0006465||IEA  go_function peptidase activity|GO:0008233||IEA  go_process signal peptide processing|GO:0006465||ISS  product signal peptidase subunit family protein  note signal peptidase subunit family protein; FUNCTIONS IN: peptidase activity; INVOLVED IN: signal peptide processing; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Signal peptidase 22 kDa subunit (InterPro:IPR007653); BEST Arabidopsis thaliana protein match is: signal peptidase subunit family protein (TAIR:AT3G05230.1); Has 297 Blast hits to 297 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 87; Plants - 44; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT5G27430.1p  transcript_id AT5G27430.1  protein_id AT5G27430.1p  transcript_id AT5G27430.1  
At5g27440	chr5:009689647	0.0	C/9689647-9690297	AT5G27440.1  CDS  gene_syn F21A20.150, F21A20_150  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: shoot, shoot apex, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G27440.1p  transcript_id AT5G27440.1  protein_id AT5G27440.1p  transcript_id AT5G27440.1  
At5g27450	chr5:009691051	0.0	W/9691051-9691183,9691695-9691944,9692039-9692286,9692376-9692783,9692878-9692975	AT5G27450.1  CDS  gene_syn F21A20.160, F21A20_160, MEVALONATE KINASE, MK, MVK  gene MK  function Encodes a protein with mevalonate kinase activity involved in the mevalonate pathway.  go_component cytoplasm|GO:0005737||IEA  go_process metabolic process|GO:0008152||IEA  go_process isoprenoid biosynthetic process|GO:0008299||IEA  go_process phosphorylation|GO:0016310||IEA  go_function mevalonate kinase activity|GO:0004496|7958957|IGI  go_function mevalonate kinase activity|GO:0004496||ISS  product MK (MEVALONATE KINASE); mevalonate kinase  note MEVALONATE KINASE (MK); FUNCTIONS IN: mevalonate kinase activity; INVOLVED IN: isoprenoid biosynthetic process, metabolic process, phosphorylation; LOCATED IN: cytoplasm; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Mevalonate kinase (InterPro:IPR006205), GHMP kinase, ATP-binding, conserved site (InterPro:IPR006203), Mevalonate and galactokinase (InterPro:IPR006206), GHMP kinase (InterPro:IPR006204), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721), GHMP kinase, C-terminal (InterPro:IPR013750); Has 1240 Blast hits to 1219 proteins in 474 species: Archae - 131; Bacteria - 612; Metazoa - 142; Fungi - 95; Plants - 33; Viruses - 0; Other Eukaryotes - 227 (source: NCBI BLink).  protein_id AT5G27450.1p  transcript_id AT5G27450.1  protein_id AT5G27450.1p  transcript_id AT5G27450.1  
At5g27450	chr5:009691051	0.0	W/9691051-9691183,9691695-9691944,9692039-9692286,9692376-9692783,9692878-9692975	AT5G27450.2  CDS  gene_syn F21A20.160, F21A20_160, MEVALONATE KINASE, MK, MVK  gene MK  function Encodes a protein with mevalonate kinase activity involved in the mevalonate pathway.  go_component cytoplasm|GO:0005737||IEA  go_process metabolic process|GO:0008152||IEA  go_process isoprenoid biosynthetic process|GO:0008299||IEA  go_process phosphorylation|GO:0016310||IEA  go_function mevalonate kinase activity|GO:0004496|7958957|IGI  go_function mevalonate kinase activity|GO:0004496||ISS  product MK (MEVALONATE KINASE); mevalonate kinase  note MEVALONATE KINASE (MK); FUNCTIONS IN: mevalonate kinase activity; INVOLVED IN: isoprenoid biosynthetic process, metabolic process, phosphorylation; LOCATED IN: cytoplasm; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Mevalonate kinase (InterPro:IPR006205), GHMP kinase, ATP-binding, conserved site (InterPro:IPR006203), Mevalonate and galactokinase (InterPro:IPR006206), GHMP kinase (InterPro:IPR006204), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721), GHMP kinase, C-terminal (InterPro:IPR013750); Has 1240 Blast hits to 1219 proteins in 474 species: Archae - 131; Bacteria - 612; Metazoa - 142; Fungi - 95; Plants - 33; Viruses - 0; Other Eukaryotes - 227 (source: NCBI BLink).  protein_id AT5G27450.2p  transcript_id AT5G27450.2  protein_id AT5G27450.2p  transcript_id AT5G27450.2  
At5g27460	chr5:009694543	0.0	C/9694543-9694815,9693262-9694464	AT5G27460.1  CDS  gene_syn F21A20.170, F21A20_170  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G02150.1); Has 3781 Blast hits to 2103 proteins in 60 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 13; Plants - 3697; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT5G27460.1p  transcript_id AT5G27460.1  protein_id AT5G27460.1p  transcript_id AT5G27460.1  
At5g27470	chr5:009695087	0.0	W/9695087-9695219,9695300-9695370,9695559-9695720,9695810-9695924,9696018-9696211,9696296-9696399,9696499-9696682,9696762-9697154	AT5G27470.1  CDS  gene_syn F21A20.180, F21A20_180  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function serine-tRNA ligase activity|GO:0004828||IEA  go_function ATP binding|GO:0005524||IEA  go_component cytosol|GO:0005829|16297076|ISS  go_process seryl-tRNA aminoacylation|GO:0006434||ISS  go_function serine-tRNA ligase activity|GO:0004828||ISS  product seryl-tRNA synthetase / serine--tRNA ligase  note seryl-tRNA synthetase / serine--tRNA ligase; FUNCTIONS IN: serine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion, seryl-tRNA aminoacylation; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: tRNA-binding arm (InterPro:IPR010978), Seryl-tRNA synthetase, class IIa, N-terminal (InterPro:IPR015866), Aminoacyl-tRNA synthetase, class II (G, H, P and S), conserved region (InterPro:IPR002314), Seryl-tRNA synthetase, class IIa (InterPro:IPR002317), Aminoacyl-tRNA synthetase, class II, conserved region (InterPro:IPR006195), Seryl-tRNA synthetase, class IIa, C-terminal (InterPro:IPR018156); BEST Arabidopsis thaliana protein match is: SRS (SERYL-TRNA SYNTHETASE); serine-tRNA ligase (TAIR:AT1G11870.2); Has 7169 Blast hits to 7168 proteins in 1635 species: Archae - 140; Bacteria - 3036; Metazoa - 295; Fungi - 180; Plants - 68; Viruses - 0; Other Eukaryotes - 3450 (source: NCBI BLink).  protein_id AT5G27470.1p  transcript_id AT5G27470.1  protein_id AT5G27470.1p  transcript_id AT5G27470.1  
At5g27480	chr5:009699529	0.0	W/9699529-9701664	AT5G27480.1  mRNA_TE_gene  pseudo  gene_syn F21A20.190, F21A20_190  note Transposable element gene, pseudogene, hypothetical protein, putative replication proteins - Arabidopsis thaliana  
At5g27490	chr5:009704591	0.0	C/9704591-9704653,9704417-9704456,9704128-9704208,9703766-9703955,9703426-9703693,9703130-9703336	AT5G27490.1  CDS  gene_syn F21A20.200, F21A20_200  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane Yip1 family protein  note integral membrane Yip1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Yip1 domain (InterPro:IPR006977); BEST Arabidopsis thaliana protein match is: integral membrane Yip1 family protein (TAIR:AT3G05280.1); Has 392 Blast hits to 391 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 206; Fungi - 68; Plants - 46; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT5G27490.1p  transcript_id AT5G27490.1  protein_id AT5G27490.1p  transcript_id AT5G27490.1  
At5g27495	chr5:009706377	0.0	W/9706377-9706461,9706563-9706720	AT5G27495.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_process pathogenesis|GO:0009405||IEA  go_function ion channel inhibitor activity|GO:0008200||IEA  product ion channel inhibitor  note ion channel inhibitor; FUNCTIONS IN: ion channel inhibitor activity; INVOLVED IN: pathogenesis; LOCATED IN: endomembrane system, extracellular region; CONTAINS InterPro DOMAIN/s: Scorpion short chain toxin (InterPro:IPR001947); BEST Arabidopsis thaliana protein match is: LCR50 (Low-molecular-weight cysteine-rich 50) (TAIR:AT2G12465.1); Has 11 Blast hits to 11 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G27495.1p  transcript_id AT5G27495.1  protein_id AT5G27495.1p  transcript_id AT5G27495.1  
At5g27500	chr5:009708136	0.0	W/9708136-9709444	AT5G27500.1  mRNA_TE_gene  pseudo  gene_syn F21A20.210, F21A20_210  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G43920.1); similar to GRF zinc finger containing protein [Brassica oleracea] (GB:ABD64950.1)  
At5g27505	chr5:009710872	0.0	C/9710872-9712425	AT5G27505.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 7.5e-26 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At5g27510	chr5:009713173	0.0	W/9713173-9714078	AT5G27510.1  CDS  gene_syn F21A20.220, F21A20_220  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G42550.1); Has 77591 Blast hits to 76844 proteins in 1868 species: Archae - 62; Bacteria - 5539; Metazoa - 34772; Fungi - 7406; Plants - 14356; Viruses - 422; Other Eukaryotes - 15034 (source: NCBI BLink).  protein_id AT5G27510.1p  transcript_id AT5G27510.1  protein_id AT5G27510.1p  transcript_id AT5G27510.1  
At5g27520	chr5:009716096	0.0	C/9716096-9716244,9715509-9715740,9715280-9715426,9715027-9715184,9714664-9714943	AT5G27520.1  CDS  gene_syn F21A20.230, F21A20_230, PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 2, PNC2  gene PNC2  function encodes a peroxisomal adenine nucleotide transporter, involved in fatty acid beta-oxidation during early stage of postgerminative growth.  go_component mitochondrial inner membrane|GO:0005743||ISS  go_component peroxisome|GO:0005777|19073762|IDA  go_process fatty acid beta-oxidation|GO:0006635|19073762|IMP  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_process ADP transport|GO:0015866|19073763|IDA  go_process ATP transport|GO:0015867|19073763|IDA  go_process indolebutyric acid metabolic process|GO:0080024|19073763|IMP  go_function ATP transmembrane transporter activity|GO:0005347|19073762|IDA  go_function binding|GO:0005488||ISS  go_function ADP transmembrane transporter activity|GO:0015217|19073762|IDA  product PNC2 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 2); ADP transmembrane transporter/ ATP transmembrane transporter/ binding  note PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 2 (PNC2); FUNCTIONS IN: binding, ADP transmembrane transporter activity, ATP transmembrane transporter activity; INVOLVED IN: in 7 processes; LOCATED IN: mitochondrial inner membrane, peroxisome; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: PNC1 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 1); ADP transmembrane transporter/ ATP transmembrane transporter/ binding (TAIR:AT3G05290.1); Has 5971 Blast hits to 5206 proteins in 259 species: Archae - 0; Bacteria - 0; Metazoa - 2780; Fungi - 1767; Plants - 951; Viruses - 0; Other Eukaryotes - 473 (source: NCBI BLink).  protein_id AT5G27520.1p  transcript_id AT5G27520.1  protein_id AT5G27520.1p  transcript_id AT5G27520.1  
At5g27530	chr5:009717503	0.0	W/9717503-9717592,9718277-9718396,9718518-9718655,9718732-9718875,9719380-9719587,9719665-9719746,9719868-9719976,9720062-9720178,9720276-9720521,9720975-9721097	AT5G27530.1  CDS  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_component cellular_component|GO:0005575||ND  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT4G35670.1); Has 2523 Blast hits to 2511 proteins in 331 species: Archae - 2; Bacteria - 532; Metazoa - 8; Fungi - 993; Plants - 898; Viruses - 4; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT5G27530.1p  transcript_id AT5G27530.1  protein_id AT5G27530.1p  transcript_id AT5G27530.1  
At5g27540	chr5:009722816	0.0	W/9722816-9723036,9723267-9723399,9723566-9723715,9723999-9724175,9724319-9724573,9724799-9724867,9724944-9724999,9725096-9725177,9725460-9725671,9725826-9725892,9726259-9726371,9726457-9726607,9726694-9726880,9727039-9727112	AT5G27540.1  CDS  gene_syn F21A20.250, F21A20_250, MIRO1, Miro-related GTP-ase 1, emb2473, embryo defective 2473  gene MIRO1  function Encodes a protein with similarity to GTPases that is localized to the mitochondrion. Involved in embryogenesis, pollen tube growth and required for mitochondrial development.  go_component mitochondrion|GO:0005739|15276431|IDA  go_function GTP binding|GO:0005525||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|18344283|IDA  go_process mitochondrion organization|GO:0007005|18344283|IMP  go_process embryonic development|GO:0009790|18344283|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process pollen tube growth|GO:0009860|18344283|IMP  product MIRO1 (Miro-related GTP-ase 1); GTP binding  note Miro-related GTP-ase 1 (MIRO1); FUNCTIONS IN: GTP binding; INVOLVED IN: embryonic development ending in seed dormancy, embryonic development, pollen tube growth, mitochondrion organization; LOCATED IN: mitochondrion; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), EF-HAND 1 (InterPro:IPR018247), EF hand associated, type-1 (InterPro:IPR013566), Miro-like (InterPro:IPR013684), EF hand associated, type-2 (InterPro:IPR013567); BEST Arabidopsis thaliana protein match is: MIRO2 (MIRO-RELATED GTP-ASE 2); GTPase/ calcium ion binding (TAIR:AT3G63150.1); Has 6361 Blast hits to 6339 proteins in 324 species: Archae - 3; Bacteria - 59; Metazoa - 3614; Fungi - 1054; Plants - 579; Viruses - 0; Other Eukaryotes - 1052 (source: NCBI BLink).  protein_id AT5G27540.1p  transcript_id AT5G27540.1  protein_id AT5G27540.1p  transcript_id AT5G27540.1  
At5g27540	chr5:009722816	0.0	W/9722816-9723036,9723267-9723399,9723566-9723715,9723999-9724175,9724319-9724573,9724799-9724867,9724944-9724999,9725096-9725177,9725460-9725671,9725826-9725892,9726259-9726371,9726457-9726607,9726694-9726880,9727039-9727112	AT5G27540.2  CDS  gene_syn F21A20.250, F21A20_250, MIRO1, Miro-related GTP-ase 1, emb2473, embryo defective 2473  gene MIRO1  function Encodes a protein with similarity to GTPases that is localized to the mitochondrion. Involved in embryogenesis, pollen tube growth and required for mitochondrial development.  go_function GTP binding|GO:0005525||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|18344283|IDA  go_process mitochondrion organization|GO:0007005|18344283|IMP  go_process embryonic development|GO:0009790|18344283|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process pollen tube growth|GO:0009860|18344283|IMP  product MIRO1 (Miro-related GTP-ase 1); GTP binding  note Miro-related GTP-ase 1 (MIRO1); FUNCTIONS IN: GTP binding; INVOLVED IN: embryonic development ending in seed dormancy, embryonic development, pollen tube growth, mitochondrion organization; LOCATED IN: mitochondrion; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), EF-HAND 1 (InterPro:IPR018247), EF hand associated, type-1 (InterPro:IPR013566), Miro-like (InterPro:IPR013684), EF hand associated, type-2 (InterPro:IPR013567); BEST Arabidopsis thaliana protein match is: MIRO2 (MIRO-RELATED GTP-ASE 2); GTPase/ calcium ion binding (TAIR:AT3G63150.1); Has 6361 Blast hits to 6339 proteins in 324 species: Archae - 3; Bacteria - 59; Metazoa - 3614; Fungi - 1054; Plants - 579; Viruses - 0; Other Eukaryotes - 1052 (source: NCBI BLink).  protein_id AT5G27540.2p  transcript_id AT5G27540.2  protein_id AT5G27540.2p  transcript_id AT5G27540.2  
At5g27550	chr5:009731314	0.0	C/9731314-9731323,9731111-9731194,9730651-9730760,9730379-9730469,9730017-9730280,9729637-9729916,9729373-9729534,9729070-9729285,9728932-9728969,9728661-9728824,9728462-9728575,9727634-9728389	AT5G27550.1  CDS  gene_syn F21A20.1  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product ATP binding / microtubule motor  note ATP binding / microtubule motor; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin motor protein-related (TAIR:AT2G22610.1).  protein_id AT5G27550.1p  transcript_id AT5G27550.1  protein_id AT5G27550.1p  transcript_id AT5G27550.1  
At5g27560	chr5:009731758	0.0	W/9731758-9732026,9732223-9732310,9732406-9732519,9732605-9732687,9732777-9732891,9732981-9733072,9733156-9733221,9733321-9733414,9733540-9733644	AT5G27560.1  CDS  gene_syn F15A18.20, F15A18_20  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 227 Blast hits to 227 proteins in 62 species: Archae - 0; Bacteria - 92; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT5G27560.1p  transcript_id AT5G27560.1  protein_id AT5G27560.1p  transcript_id AT5G27560.1  
At5g27570	chr5:009734896	0.0	C/9734896-9736131	AT5G27570.1  CDS  gene_syn F15A18.30, F15A18_30  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process signal transduction|GO:0007165||ISS  go_function signal transducer activity|GO:0004871||ISS  product WD-40 repeat family protein  note WD-40 repeat family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: signal transduction; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein (TAIR:AT5G27080.1); Has 29981 Blast hits to 16478 proteins in 518 species: Archae - 52; Bacteria - 4610; Metazoa - 13208; Fungi - 5694; Plants - 2670; Viruses - 0; Other Eukaryotes - 3747 (source: NCBI BLink).  protein_id AT5G27570.1p  transcript_id AT5G27570.1  protein_id AT5G27570.1p  transcript_id AT5G27570.1  
At5g27580	chr5:009736651	0.0	W/9736651-9737322	AT5G27580.1  CDS  gene_syn AGL89, F15A18.40, F15A18_40  gene AGL89  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL89; transcription factor  note AGL89; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding / transcription factor (TAIR:AT5G27944.1); Has 389 Blast hits to 387 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 389; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G27580.1p  transcript_id AT5G27580.1  protein_id AT5G27580.1p  transcript_id AT5G27580.1  
At5g27590	chr5:009738492	0.0	C/9738492-9740473	AT5G27590.1  mRNA_TE_gene  pseudo  gene_syn F15A18.50, F15A18_50  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G03950.1); similar to hypothetical protein PFF0685c [Plasmodium falciparum 3D7] (GB:XP_966128.1)  
At5g27600	chr5:009742616	0.0	W/9742616-9742748,9742846-9742906,9743001-9743078,9743165-9743236,9743332-9743413,9743496-9743601,9743690-9743766,9743892-9743936,9744019-9744105,9744239-9744328,9744420-9744499,9744581-9744674,9744762-9744850,9744932-9745020,9745115-9745244,9745369-9745487,9745595-9745718,9745803-9745889,9745977-9746080,9746166-9746251,9746343-9746429,9746518-9746604,9746700-9746795	AT5G27600.1  CDS  gene_syn F15A18.60, F15A18_60, LACS7, LONG-CHAIN ACYL-COA SYNTHETASE 7  gene LACS7  function Encode peroxisomal long-chain acyl-CoA synthetase. Activates fatty acids for further metabolism. Interacts with PEX5.  go_component peroxisome|GO:0005777|17951448|IDA  go_component peroxisome|GO:0005777|16256065|TAS  go_process long-chain fatty acid metabolic process|GO:0001676||TAS  go_process response to salt stress|GO:0009651|16256065|IEP  go_process response to ozone|GO:0010193|16256065|IEP  go_function long-chain-fatty-acid-CoA ligase activity|GO:0004467|16256065|TAS  go_function protein binding|GO:0005515|16256065|IPI  product LACS7 (LONG-CHAIN ACYL-COA SYNTHETASE 7); long-chain-fatty-acid-CoA ligase/ protein binding  note LONG-CHAIN ACYL-COA SYNTHETASE 7 (LACS7); FUNCTIONS IN: protein binding, long-chain-fatty-acid-CoA ligase activity; INVOLVED IN: response to salt stress, long-chain fatty acid metabolic process, response to ozone; LOCATED IN: peroxisome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: LACS6 (long-chain acyl-CoA synthetase 6); long-chain-fatty-acid-CoA ligase (TAIR:AT3G05970.1); Has 38563 Blast hits to 36780 proteins in 2022 species: Archae - 491; Bacteria - 21036; Metazoa - 2327; Fungi - 1596; Plants - 1172; Viruses - 1; Other Eukaryotes - 11940 (source: NCBI BLink).  protein_id AT5G27600.1p  transcript_id AT5G27600.1  protein_id AT5G27600.1p  transcript_id AT5G27600.1  
At5g27603	chr5:009750868	0.0	W/9750868-9751143	AT5G27603.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g27606	chr5:009752002	0.0	W/9752002-9752142,9752361-9752507,9752555-9752668,9752994-9753404	AT5G27606.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 6 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G27606.1p  transcript_id AT5G27606.1  protein_id AT5G27606.1p  transcript_id AT5G27606.1  
At5g27610	chr5:009764852	0.0	W/9764852-9764950,9765073-9765171,9765258-9765323,9765467-9765544,9765777-9765951,9766124-9766332,9766416-9766680,9766815-9767059,9767151-9767213,9767395-9767709,9767783-9767961,9768040-9768316,9768404-9768595,9768699-9768836,9768974-9769051,9769155-9769424,9769539-9769706	AT5G27610.1  CDS  gene_syn F15A18.70, F15A18_70  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product DNA binding / transcription factor  note DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Myb, DNA-binding (InterPro:IPR014778), DIRP (InterPro:IPR010561); BEST Arabidopsis thaliana protein match is: DNA binding / nucleic acid binding / transcription factor (TAIR:AT3G05380.2); Has 606 Blast hits to 521 proteins in 85 species: Archae - 0; Bacteria - 11; Metazoa - 410; Fungi - 25; Plants - 68; Viruses - 1; Other Eukaryotes - 91 (source: NCBI BLink).  protein_id AT5G27610.1p  transcript_id AT5G27610.1  protein_id AT5G27610.1p  transcript_id AT5G27610.1  
At5g27620	chr5:009771762	0.0	W/9771762-9771821,9772038-9772088,9772165-9772243,9772340-9772452,9772560-9772633,9772816-9772936,9773045-9773113,9773383-9773424,9773608-9773685,9774037-9774095,9774234-9774318,9774404-9774495,9774597-9774684	AT5G27620.1  CDS  gene_syn CYCH;1, CYCLIN H;1, F15A18.80, F15A18_80  gene CYCH;1  function core cell cycle genes  go_process translational initiation|GO:0006413||IEA  go_component nucleus|GO:0005634|16856985|IDA  go_component cytoplasm|GO:0005737|16856985|IDA  go_process regulation of cell cycle|GO:0051726||ISS  go_function protein kinase activity|GO:0004672|16856985|IDA  go_function cyclin-dependent protein kinase activity|GO:0004693||ISS  go_function protein binding|GO:0005515|16856985|IPI  product CYCH;1 (CYCLIN H;1); cyclin-dependent protein kinase/ protein binding / protein kinase  note CYCLIN H;1 (CYCH;1); FUNCTIONS IN: protein binding, protein kinase activity, cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle, translational initiation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin H (InterPro:IPR015432), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-like (InterPro:IPR011028), Transcription regulator cyclin (InterPro:IPR015429), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: cyclin family protein (TAIR:AT5G48640.1); Has 711 Blast hits to 711 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 357; Fungi - 189; Plants - 86; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT5G27620.1p  transcript_id AT5G27620.1  protein_id AT5G27620.1p  transcript_id AT5G27620.1  
At5g27630	chr5:009776101	0.0	W/9776101-9776262,9776507-9776577,9776946-9777009,9777097-9777168,9777287-9777478,9777577-9777654,9777818-9777928,9778054-9778120,9778226-9778287,9778532-9778671,9778853-9778979,9779051-9779165,9779338-9779426,9779566-9779649,9779719-9779844,9780008-9780154,9780399-9780458,9780601-9780780	AT5G27630.1  CDS  gene_syn ACBP5, ACYL-COA BINDING PROTEIN 5, F15A18.90, F15A18_90  gene ACBP5  function Acyl-CoA binding protein with high affinity for oleoyl-CoA. Expressed in all plant organs. Involved in fatty acid transport.  go_component cytosol|GO:0005829|18773301|IDA  go_process lipid transport|GO:0006869|15604682|IDA  go_function acyl-CoA binding|GO:0000062|15604682|IDA  go_function acyl-CoA binding|GO:0000062||ISS  product ACBP5 (ACYL-COA BINDING PROTEIN 5); acyl-CoA binding  note ACYL-COA BINDING PROTEIN 5 (ACBP5); FUNCTIONS IN: acyl-CoA binding; INVOLVED IN: lipid transport; LOCATED IN: cytosol; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Acyl-CoA-binding protein, ACBP (InterPro:IPR000582), Kelch-type beta propeller (InterPro:IPR015915), FERM/acyl-CoA-binding protein, 3-helical bundle (InterPro:IPR014352); BEST Arabidopsis thaliana protein match is: ACBP4 (ACYL-COA BINDING PROTEIN 4); acyl-CoA binding (TAIR:AT3G05420.1); Has 8607 Blast hits to 4779 proteins in 381 species: Archae - 21; Bacteria - 408; Metazoa - 4152; Fungi - 831; Plants - 1245; Viruses - 0; Other Eukaryotes - 1950 (source: NCBI BLink).  protein_id AT5G27630.1p  transcript_id AT5G27630.1  protein_id AT5G27630.1p  transcript_id AT5G27630.1  
At5g27640	chr5:009784650	0.0	C/9784650-9784759,9784162-9784399,9783840-9783986,9783438-9783566,9783134-9783262,9782963-9783046,9782767-9782891,9782462-9782660,9781823-9782355,9781628-9781736,9781207-9781542	AT5G27640.1  CDS  gene_syn ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1, ATEIF3B-1, ATTIF3B1, EIF3B, EIF3B-1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1, T1G16.2, TIF3B1, TRANSLATION INITIATION FACTOR 3B1  gene TIF3B1  function encodes a member of eukaryotic translation initiation factor 3B family.  go_process translational initiation|GO:0006413||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component eukaryotic translation initiation factor 3 complex|GO:0005852|11042177|ISS  go_function nucleic acid binding|GO:0003676||ISS  go_function translation initiation factor activity|GO:0003743|11042177|ISS  go_function translation initiation factor activity|GO:0003743|11042177|TAS  go_function translation initiation factor activity|GO:0003743||ISS  product TIF3B1 (TRANSLATION INITIATION FACTOR 3B1); nucleic acid binding / translation initiation factor  note TRANSLATION INITIATION FACTOR 3B1 (TIF3B1); FUNCTIONS IN: translation initiation factor activity, nucleic acid binding; INVOLVED IN: translational initiation; LOCATED IN: cytosol, eukaryotic translation initiation factor 3 complex, nucleus; EXPRESSED IN: guard cell, cultured cell, seed; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Eukaryotic translation initiation factor 2A, central region (InterPro:IPR013979), WD40/YVTN repeat-like (InterPro:IPR015943), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Translation initiation factor eIF-3b (InterPro:IPR011400); BEST Arabidopsis thaliana protein match is: EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2); nucleic acid binding / protein binding / translation initiation factor (TAIR:AT5G25780.1); Has 703 Blast hits to 698 proteins in 172 species: Archae - 0; Bacteria - 13; Metazoa - 238; Fungi - 187; Plants - 58; Viruses - 6; Other Eukaryotes - 201 (source: NCBI BLink).  protein_id AT5G27640.1p  transcript_id AT5G27640.1  protein_id AT5G27640.1p  transcript_id AT5G27640.1  
At5g27640	chr5:009784650	0.0	C/9784650-9784759,9784162-9784399,9783840-9784064,9783438-9783566,9783134-9783262,9782963-9783046,9782767-9782891,9782462-9782660,9781823-9782355,9781628-9781736,9781207-9781542	AT5G27640.2  CDS  gene_syn ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1, ATEIF3B-1, ATTIF3B1, EIF3B, EIF3B-1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1, T1G16.2, TIF3B1, TRANSLATION INITIATION FACTOR 3B1  gene TIF3B1  function encodes a member of eukaryotic translation initiation factor 3B family.  go_process translational initiation|GO:0006413||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component eukaryotic translation initiation factor 3 complex|GO:0005852|11042177|ISS  go_function nucleic acid binding|GO:0003676||ISS  go_function translation initiation factor activity|GO:0003743|11042177|ISS  go_function translation initiation factor activity|GO:0003743|11042177|TAS  go_function translation initiation factor activity|GO:0003743||ISS  product TIF3B1 (TRANSLATION INITIATION FACTOR 3B1); nucleic acid binding / translation initiation factor  note TRANSLATION INITIATION FACTOR 3B1 (TIF3B1); FUNCTIONS IN: translation initiation factor activity, nucleic acid binding; INVOLVED IN: translational initiation; LOCATED IN: cytosol, eukaryotic translation initiation factor 3 complex, nucleus; EXPRESSED IN: guard cell, cultured cell, seed; CONTAINS InterPro DOMAIN/s: Eukaryotic translation initiation factor 2A, central region (InterPro:IPR013979), WD40/YVTN repeat-like (InterPro:IPR015943), Translation initiation factor eIF-3b (InterPro:IPR011400); BEST Arabidopsis thaliana protein match is: EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2); nucleic acid binding / protein binding / translation initiation factor (TAIR:AT5G25780.1); Has 688 Blast hits to 683 proteins in 172 species: Archae - 0; Bacteria - 13; Metazoa - 238; Fungi - 187; Plants - 58; Viruses - 6; Other Eukaryotes - 186 (source: NCBI BLink).  protein_id AT5G27640.2p  transcript_id AT5G27640.2  protein_id AT5G27640.2p  transcript_id AT5G27640.2  
At5g27650	chr5:009785511	0.0	W/9785511-9786660,9787026-9789094	AT5G27650.1  CDS  gene_syn T1G16.4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product PWWP domain-containing protein  note PWWP domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: PWWP domain-containing protein (TAIR:AT3G05430.1); Has 6970 Blast hits to 4442 proteins in 299 species: Archae - 10; Bacteria - 363; Metazoa - 3592; Fungi - 627; Plants - 302; Viruses - 141; Other Eukaryotes - 1935 (source: NCBI BLink).  protein_id AT5G27650.1p  transcript_id AT5G27650.1  protein_id AT5G27650.1p  transcript_id AT5G27650.1  
At5g27660	chr5:009792221	0.0	C/9792221-9792235,9792034-9792136,9791837-9791944,9791547-9791732,9791334-9791461,9790951-9791162,9790759-9790840,9790519-9790661,9790315-9790435,9790135-9790209,9789899-9790015	AT5G27660.1  CDS  gene_syn T1G16.1  go_process proteolysis|GO:0006508||IEA  go_function catalytic activity|GO:0003824||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function protein binding|GO:0005515||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type peptidase activity|GO:0008236||ISS  product catalytic/ protein binding / serine-type endopeptidase/ serine-type peptidase  note catalytic/ protein binding / serine-type endopeptidase/ serine-type peptidase; FUNCTIONS IN: serine-type peptidase activity, protein binding, catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase, trypsin-like serine and cysteine (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1 and S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DEGP1 (DegP protease 1); serine-type endopeptidase/ serine-type peptidase (TAIR:AT3G27925.1); Has 11278 Blast hits to 11249 proteins in 1425 species: Archae - 66; Bacteria - 6040; Metazoa - 301; Fungi - 109; Plants - 289; Viruses - 0; Other Eukaryotes - 4473 (source: NCBI BLink).  protein_id AT5G27660.1p  transcript_id AT5G27660.1  protein_id AT5G27660.1p  transcript_id AT5G27660.1  
At5g27670	chr5:009793150	0.0	C/9793150-9793365,9792807-9793043	AT5G27670.1  CDS  gene_syn HISTONE H2A 7, HTA7, T1G16.3  gene HTA7  function Encodes HTA7, a histone H2A protein.  go_component nucleolus|GO:0005730|15496452|IDA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product HTA7 (HISTONE H2A 7); DNA binding  note HISTONE H2A 7 (HTA7); FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: HTA12; DNA binding (TAIR:AT5G02560.1); Has 3272 Blast hits to 3272 proteins in 308 species: Archae - 0; Bacteria - 0; Metazoa - 2203; Fungi - 238; Plants - 451; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink).  protein_id AT5G27670.1p  transcript_id AT5G27670.1  protein_id AT5G27670.1p  transcript_id AT5G27670.1  
At5g27680	chr5:009798055	0.0	C/9798055-9798637,9797745-9797964,9797546-9797656,9797254-9797443,9796793-9797096,9796277-9796458,9796015-9796071,9795786-9795866,9795611-9795674,9795431-9795530,9795263-9795346,9795096-9795183,9794821-9794943,9794650-9794742,9794244-9794540	AT5G27680.1  CDS  gene_syn Arabidopsis RecQ helicase sim, RECQSIM, T1G16.10, T1G16_10  gene RECQSIM  function DNA helicase  go_process DNA recombination|GO:0006310||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_component cellular_component|GO:0005575||ND  go_function ATP-dependent helicase activity|GO:0008026||ISS  product RECQSIM (Arabidopsis RecQ helicase sim); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding  note Arabidopsis RecQ helicase sim (RECQSIM); FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: DNA recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), DNA helicase, ATP-dependent, RecQ type, N-terminal region (InterPro:IPR018329), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RECQL2 (ARABIDOPSIS RECQ HELICASE L2); 3 -5  DNA helicase/ ATP-dependent helicase/ four-way junction helicase/ protein binding (TAIR:AT1G31360.1); Has 15007 Blast hits to 11470 proteins in 1477 species: Archae - 231; Bacteria - 8239; Metazoa - 2159; Fungi - 1195; Plants - 619; Viruses - 14; Other Eukaryotes - 2550 (source: NCBI BLink).  protein_id AT5G27680.1p  transcript_id AT5G27680.1  protein_id AT5G27680.1p  transcript_id AT5G27680.1  
At5g27690	chr5:009803796	0.0	W/9803796-9803885,9803985-9804060,9804144-9805036	AT5G27690.1  CDS  gene_syn T1G16.20, T1G16_20  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_process metal ion transport|GO:0030001||ISS  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT5G19090.3); Has 3469 Blast hits to 2756 proteins in 254 species: Archae - 0; Bacteria - 104; Metazoa - 1069; Fungi - 299; Plants - 1642; Viruses - 40; Other Eukaryotes - 315 (source: NCBI BLink).  protein_id AT5G27690.1p  transcript_id AT5G27690.1  protein_id AT5G27690.1p  transcript_id AT5G27690.1  
At5g27700	chr5:009807999	0.0	C/9807999-9808048,9807758-9807890,9807541-9807606	AT5G27700.1  CDS  gene_syn T1G16.30, T1G16_30  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product structural constituent of ribosome  note structural constituent of ribosome; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, ribosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S21e, conserved site (InterPro:IPR018279), Ribosomal protein S21e (InterPro:IPR001931); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S21 (RPS21B) (TAIR:AT3G53890.2); Has 477 Blast hits to 477 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 223; Fungi - 90; Plants - 74; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT5G27700.1p  transcript_id AT5G27700.1  protein_id AT5G27700.1p  transcript_id AT5G27700.1  
At5g27705	chr5:009811769	0.0	W/9811769-9812302	AT5G27705.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.2e-58 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element)  
At5g27710	chr5:009813069	0.0	W/9813069-9813512,9813587-9813664,9813739-9813881,9814272-9814342,9814460-9814555,9814701-9814793,9814936-9815018	AT5G27710.1  CDS  gene_syn T1G16.40, T1G16_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 23 Blast hits to 23 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G27710.1p  transcript_id AT5G27710.1  protein_id AT5G27710.1p  transcript_id AT5G27710.1  
At5g27715	chr5:009815402	0.0	C/9815402-9815473	AT5G27715.1  tRNA  gene_syn 67960.TRNA-GLU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Glu (anticodon: TTC)  transcript_id AT5G27715.1  
At5g27720	chr5:009815904	0.0	W/9815904-9815906,9816005-9816046,9816179-9816277,9816383-9816460,9816888-9816924,9817056-9817163,9817282-9817304	AT5G27720.1  CDS  gene_syn T1G16.50, T1G16_50, emb1644, embryo defective 1644  gene emb1644  go_component nucleus|GO:0005634||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product emb1644 (embryo defective 1644)  note embryo defective 1644 (emb1644); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative (TAIR:AT1G20580.1); Has 1164 Blast hits to 1156 proteins in 179 species: Archae - 0; Bacteria - 6; Metazoa - 536; Fungi - 265; Plants - 172; Viruses - 5; Other Eukaryotes - 180 (source: NCBI BLink).  protein_id AT5G27720.1p  transcript_id AT5G27720.1  protein_id AT5G27720.1p  transcript_id AT5G27720.1  
At5g27730	chr5:009820311	0.0	W/9820311-9820457,9820536-9820673,9820750-9820831,9820910-9820986,9821081-9821196,9821293-9821410,9821500-9821616,9821812-9821903,9821986-9822052,9822143-9822224,9822309-9822400,9822495-9822638,9822722-9822868	AT5G27730.1  CDS  gene_syn T1G16.60, T1G16_60  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47900.1); Has 651 Blast hits to 616 proteins in 129 species: Archae - 0; Bacteria - 235; Metazoa - 100; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 256 (source: NCBI BLink).  protein_id AT5G27730.1p  transcript_id AT5G27730.1  protein_id AT5G27730.1p  transcript_id AT5G27730.1  
At5g27740	chr5:009823831	0.0	W/9823831-9823914,9823998-9824108,9824316-9824348,9824562-9824730,9825155-9825336,9825850-9825986,9826106-9826204,9826290-9826359,9826448-9826522,9826675-9826720,9826811-9826869	AT5G27740.1  CDS  gene_syn EMB2775, EMBRYO DEFECTIVE 2775, T1G16.70, T1G16_70  gene EMB2775  go_process DNA replication|GO:0006260||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function DNA binding|GO:0003677||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  product EMB2775 (EMBRYO DEFECTIVE 2775); DNA binding / nucleoside-triphosphatase/ nucleotide binding  note EMBRYO DEFECTIVE 2775 (EMB2775); FUNCTIONS IN: nucleoside-triphosphatase activity, DNA binding, nucleotide binding; INVOLVED IN: DNA replication; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA polymerase III clamp loader subunit, C-terminal (InterPro:IPR008921); BEST Arabidopsis thaliana protein match is: emb1968 (embryo defective 1968); ATP binding / ATPase/ DNA binding / DNA clamp loader/ nucleoside-triphosphatase/ nucleotide binding (TAIR:AT1G21690.1); Has 8053 Blast hits to 8003 proteins in 1440 species: Archae - 377; Bacteria - 2705; Metazoa - 463; Fungi - 373; Plants - 162; Viruses - 67; Other Eukaryotes - 3906 (source: NCBI BLink).  protein_id AT5G27740.1p  transcript_id AT5G27740.1  protein_id AT5G27740.1p  transcript_id AT5G27740.1  
At5g27750	chr5:009828430	0.0	W/9828430-9829380,9829472-9829612,9829694-9829981	AT5G27750.1  CDS  gene_syn T1G16.80, T1G16_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13780.1); Has 1286 Blast hits to 1256 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1286; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G27750.1p  transcript_id AT5G27750.1  protein_id AT5G27750.1p  transcript_id AT5G27750.1  
At5g27760	chr5:009830396	0.0	W/9830396-9830465,9830793-9830883,9831430-9831559	AT5G27760.1  CDS  gene_syn T1G16.90, T1G16_90  go_component cellular_component|GO:0005575||ND  go_process response to hypoxia|GO:0001666||ISS  go_function molecular_function|GO:0003674||ND  product hypoxia-responsive family protein  note hypoxia-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to hypoxia; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Hypoxia induced protein conserved region (InterPro:IPR007667); BEST Arabidopsis thaliana protein match is: hypoxia-responsive family protein (TAIR:AT3G05550.1); Has 82 Blast hits to 82 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 29; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G27760.1p  transcript_id AT5G27760.1  protein_id AT5G27760.1p  transcript_id AT5G27760.1  
At5g27770	chr5:009836166	0.0	W/9836166-9836395,9836969-9837113	AT5G27770.1  CDS  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  product 60S ribosomal protein L22 (RPL22C)  note 60S ribosomal protein L22 (RPL22C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, ribosome, nucleolus, plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L22e (InterPro:IPR002671); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L22-2 (RPL22B) (TAIR:AT3G05560.3); Has 492 Blast hits to 492 proteins in 173 species: Archae - 0; Bacteria - 0; Metazoa - 251; Fungi - 89; Plants - 73; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT5G27770.1p  transcript_id AT5G27770.1  protein_id AT5G27770.1p  transcript_id AT5G27770.1  
At5g27771	chr5:009837595	0.0	C/9837595-9837944	AT5G27771.1  pseudogenic_transcript  pseudo  function pseudogene of auxin-responsive family protein  
At5g27780	chr5:009838885	0.0	C/9838885-9839313	AT5G27780.1  CDS  gene_syn T1G16.110, T1G16_110  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT1G29430.1); Has 332 Blast hits to 323 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 332; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G27780.1p  transcript_id AT5G27780.1  protein_id AT5G27780.1p  transcript_id AT5G27780.1  
At5g27790	chr5:009841991	0.0	C/9841991-9842003,9840925-9841895	AT5G27790.1  CDS  gene_syn T1G16.120, T1G16_120  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G41920.1); Has 73479 Blast hits to 72853 proteins in 1760 species: Archae - 72; Bacteria - 5623; Metazoa - 31740; Fungi - 7516; Plants - 13854; Viruses - 350; Other Eukaryotes - 14324 (source: NCBI BLink).  protein_id AT5G27790.1p  transcript_id AT5G27790.1  protein_id AT5G27790.1p  transcript_id AT5G27790.1  
At5g27800	chr5:009842412	0.0	W/9842412-9842711,9842796-9842843,9842934-9843050,9843141-9843235,9843285-9843590,9843642-9843804	AT5G27800.1  CDS  gene_syn T1G16.130, T1G16_130  go_component cytoplasm|GO:0005737||IEA  go_process translation|GO:0006412||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function ATP binding|GO:0005524||IEA  product ATP binding / aminoacyl-tRNA ligase/ nucleotide binding  note ATP binding / aminoacyl-tRNA ligase/ nucleotide binding; FUNCTIONS IN: nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (D, K and N)-like (InterPro:IPR018150); Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G27800.1p  transcript_id AT5G27800.1  protein_id AT5G27800.1p  transcript_id AT5G27800.1  
At5g27807	chr5:009852664	0.0	W/9852664-9852783	AT5G27807.1  miRNA  gene_syn EARLY EXTRA PETALS 1, EEP1, MICRORNA 164, MICRORNA 164C, MIR164, MIR164C  gene MIR164C  function Encodes a microRNA that targets several genes containing NAC domains including NAC1. Overexpression leads to decreased NAC1 mRNA and reduced lateral roots. Loss of function mutants have increased NAC1 and increased number of lateral roots. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGGAGAAGCAGGGCACGUGCG. Early extra petal mutant (eep1)  go_component cellular_component|GO:0005575||ND  go_process leaf senescence|GO:0010150|19229035|IMP  go_process negative regulation of transcription|GO:0016481|15723790|IMP  go_process gene silencing by miRNA|GO:0035195|15851028|IDA  go_process petal formation|GO:0048451|15723790|IMP  go_process specification of decreased petal number|GO:0048835|15723790|IMP  go_function translation repressor activity, nucleic acid binding|GO:0000900|15723790|IMP  product MIR164C (MICRORNA 164C); miRNA  transcript_id AT5G27807.1  
At5g27810	chr5:009855827	0.0	W/9855827-9856186	AT5G27810.1  CDS  gene_syn T1G16.140, T1G16_140  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700||IEA  go_function sequence-specific DNA binding|GO:0043565||IEA  product sequence-specific DNA binding / transcription factor  note sequence-specific DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL80 (AGAMOUS-LIKE 80); DNA binding / transcription factor (TAIR:AT5G48670.1); Has 286 Blast hits to 285 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 286; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G27810.1p  transcript_id AT5G27810.1  protein_id AT5G27810.1p  transcript_id AT5G27810.1  
At5g27820	chr5:009860584	0.0	W/9860584-9860928	AT5G27820.1  CDS  gene_syn T1G16.150, T1G16_150  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L18 family protein  note ribosomal protein L18 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18/L5 (InterPro:IPR005484); BEST Arabidopsis thaliana protein match is: 50S ribosomal protein L18 family (TAIR:AT3G20230.1); Has 2824 Blast hits to 2824 proteins in 960 species: Archae - 0; Bacteria - 2021; Metazoa - 3; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 687 (source: NCBI BLink).  protein_id AT5G27820.1p  transcript_id AT5G27820.1  protein_id AT5G27820.1p  transcript_id AT5G27820.1  
At5g27830	chr5:009861344	0.0	W/9861344-9861425,9861738-9861830,9861918-9862108,9862215-9862537,9862616-9862742	AT5G27830.2  CDS  gene_syn T1G16.160, T1G16_160  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Folate receptor, conserved region (InterPro:IPR018143); Has 31 Blast hits to 31 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT5G27830.2p  transcript_id AT5G27830.2  protein_id AT5G27830.2p  transcript_id AT5G27830.2  
At5g27830	chr5:009861344	0.0	W/9861344-9861425,9861738-9862108,9862215-9862537,9862616-9862742	AT5G27830.1  CDS  gene_syn T1G16.160, T1G16_160  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Folate receptor, conserved region (InterPro:IPR018143); Has 46 Blast hits to 46 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT5G27830.1p  transcript_id AT5G27830.1  protein_id AT5G27830.1p  transcript_id AT5G27830.1  
At5g27830	chr5:009861352	0.0	W/9861352-9861367,9861738-9862108,9862215-9862537,9862616-9862742	AT5G27830.3  CDS  gene_syn T1G16.160, T1G16_160  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Folate receptor, conserved region (InterPro:IPR018143); Has 46 Blast hits to 46 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT5G27830.3p  transcript_id AT5G27830.3  protein_id AT5G27830.3p  transcript_id AT5G27830.3  
At5g27840	chr5:009864636	0.0	C/9864636-9864828,9863916-9864475,9863607-9863786,9863311-9863334	AT5G27840.1  CDS  gene_syn T1G16.170, T1G16_170, TOPP8  gene TOPP8  function encodes a serine/threonine protein phosphatase expressed in expressed in roots, rosettes and flowers.  go_component cellular_component|GO:0005575||ND  go_process protein amino acid dephosphorylation|GO:0006470|9617814|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722|9617814|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product TOPP8; protein serine/threonine phosphatase  note TOPP8; FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: serine/threonine protein phosphatase, putative (TAIR:AT3G05580.1); Has 5602 Blast hits to 5476 proteins in 483 species: Archae - 49; Bacteria - 411; Metazoa - 2059; Fungi - 932; Plants - 614; Viruses - 9; Other Eukaryotes - 1528 (source: NCBI BLink).  protein_id AT5G27840.1p  transcript_id AT5G27840.1  protein_id AT5G27840.1p  transcript_id AT5G27840.1  
At5g27840	chr5:009864636	0.0	C/9864636-9864828,9863916-9864475,9863607-9863786,9863465-9863506	AT5G27840.2  CDS  gene_syn T1G16.170, T1G16_170, TOPP8  gene TOPP8  function encodes a serine/threonine protein phosphatase expressed in expressed in roots, rosettes and flowers.  go_component cellular_component|GO:0005575||ND  go_process protein amino acid dephosphorylation|GO:0006470|9617814|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722|9617814|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product TOPP8; protein serine/threonine phosphatase  note TOPP8; FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: serine/threonine protein phosphatase, putative (TAIR:AT3G05580.1); Has 5602 Blast hits to 5476 proteins in 483 species: Archae - 49; Bacteria - 411; Metazoa - 2059; Fungi - 932; Plants - 614; Viruses - 9; Other Eukaryotes - 1528 (source: NCBI BLink).  protein_id AT5G27840.2p  transcript_id AT5G27840.2  protein_id AT5G27840.2p  transcript_id AT5G27840.2  
At5g27845	chr5:009868348	0.0	W/9868348-9871836	AT5G27845.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 6.6e-32 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)  
At5g27850	chr5:009873169	0.0	W/9873169-9873171,9873338-9873427,9873521-9873649,9873871-9874053,9874139-9874297	AT5G27850.1  CDS  gene_syn F14I23.10, F14I23_10  go_component vacuole|GO:0005773|15215502|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L18 (RPL18C)  note 60S ribosomal protein L18 (RPL18C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, vacuole, large ribosomal subunit, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18e (InterPro:IPR000039); BEST Arabidopsis thaliana protein match is: RPL18 (RIBOSOMAL PROTEIN L18); structural constituent of ribosome (TAIR:AT3G05590.1); Has 601 Blast hits to 601 proteins in 237 species: Archae - 28; Bacteria - 0; Metazoa - 279; Fungi - 98; Plants - 80; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT5G27850.1p  transcript_id AT5G27850.1  protein_id AT5G27850.1p  transcript_id AT5G27850.1  
At5g27860	chr5:009876231	0.0	C/9876231-9876442,9875791-9875854,9875645-9875707,9875401-9875445,9875262-9875318,9875068-9875160	AT5G27860.1  CDS  gene_syn F14I23.20, F14I23_20  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; Has 22088 Blast hits to 10770 proteins in 428 species: Archae - 2; Bacteria - 385; Metazoa - 13261; Fungi - 1842; Plants - 1302; Viruses - 90; Other Eukaryotes - 5206 (source: NCBI BLink).  protein_id AT5G27860.1p  transcript_id AT5G27860.1  protein_id AT5G27860.1p  transcript_id AT5G27860.1  
At5g27860	chr5:009876231	0.0	C/9876231-9876442,9875791-9875854,9875645-9875707,9875401-9875445,9875262-9875318,9875068-9875160	AT5G27860.2  CDS  gene_syn F14I23.20, F14I23_20  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: pollen tube.  protein_id AT5G27860.2p  transcript_id AT5G27860.2  protein_id AT5G27860.2p  transcript_id AT5G27860.2  
At5g27870	chr5:009880807	0.0	C/9880807-9881806,9878991-9880189	AT5G27870.1  CDS  gene_syn F14I23.30, F14I23_30  go_component cell wall|GO:0005618||IEA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_process cell wall modification|GO:0042545||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase inhibitor (InterPro:IPR006501), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT3G05610.1); Has 90739 Blast hits to 27398 proteins in 1320 species: Archae - 145; Bacteria - 33734; Metazoa - 21135; Fungi - 10945; Plants - 5928; Viruses - 1802; Other Eukaryotes - 17050 (source: NCBI BLink).  protein_id AT5G27870.1p  transcript_id AT5G27870.1  protein_id AT5G27870.1p  transcript_id AT5G27870.1  
At5g27880	chr5:009885908	0.0	W/9885908-9886744	AT5G27880.1  CDS  gene_syn F14I23.40, F14I23_40  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) protein-related (TAIR:AT5G54340.1); Has 396 Blast hits to 394 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 391; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G27880.1p  transcript_id AT5G27880.1  protein_id AT5G27880.1p  transcript_id AT5G27880.1  
At5g27882	chr5:009888332	0.0	C/9888332-9889951	AT5G27882.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.5e-36 P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At5g27885	chr5:009892138	0.0	C/9892138-9896776	AT5G27885.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 9.4e-260 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At5g27889	chr5:009903437	0.0	W/9903437-9903598	AT5G27889.1  CDS  product unknown protein  note unknown protein; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G27889.1p  transcript_id AT5G27889.1  protein_id AT5G27889.1p  transcript_id AT5G27889.1  
At5g27890	chr5:009903640	0.0	W/9903640-9903931,9904047-9904208,9904387-9904458,9904569-9904805,9905008-9905129,9905216-9905347	AT5G27890.1  CDS  gene_syn F14I23.50, F14I23_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT2G15420.1); Has 24 Blast hits to 18 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G27890.1p  transcript_id AT5G27890.1  protein_id AT5G27890.1p  transcript_id AT5G27890.1  
At5g27895	chr5:009906058	0.0	C/9906058-9909700	AT5G27895.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 3.2e-102 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays)  
At5g27900	chr5:009913203	0.0	W/9913203-9918023	AT5G27900.1  mRNA_TE_gene  pseudo  gene_syn F14I23.60, F14I23_60  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.1e-26 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At5g27902	chr5:009921056	0.0	C/9921056-9923736	AT5G27902.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 5.3e-51 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At5g27905	chr5:009925219	0.0	W/9925219-9930411	AT5G27905.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 9.6e-35 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)  
At5g27910	chr5:009940736	0.0	C/9940736-9941299	AT5G27910.1  CDS  gene_syn F15F15.1, NF-YC8, NUCLEAR FACTOR Y, SUBUNIT C8  gene NF-YC8  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YC8 (NUCLEAR FACTOR Y, SUBUNIT C8); DNA binding / transcription factor  note NUCLEAR FACTOR Y, SUBUNIT C8 (NF-YC8); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: NF-YC5 (NUCLEAR FACTOR Y, SUBUNIT C5); DNA binding / transcription factor (TAIR:AT5G50490.1); Has 827 Blast hits to 827 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 332; Fungi - 187; Plants - 237; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT5G27910.1p  transcript_id AT5G27910.1  protein_id AT5G27910.1p  transcript_id AT5G27910.1  
At5g27920	chr5:009943881	0.0	C/9943881-9944507,9943659-9943784,9943473-9943577,9942999-9943398,9942773-9942902,9942396-9942690,9942063-9942308	AT5G27920.1  CDS  gene_syn F15F15.2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product F-box family protein  note F-box family protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: F-box family protein (FBL3) (TAIR:AT5G01720.1); Has 10236 Blast hits to 3505 proteins in 207 species: Archae - 0; Bacteria - 631; Metazoa - 4869; Fungi - 921; Plants - 2316; Viruses - 19; Other Eukaryotes - 1480 (source: NCBI BLink).  protein_id AT5G27920.1p  transcript_id AT5G27920.1  protein_id AT5G27920.1p  transcript_id AT5G27920.1  
At5g27925	chr5:009949686	0.0	W/9949686-9954107	AT5G27925.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 9.0e-249 P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At5g27927	chr5:009956859	0.0	C/9956859-9957640	AT5G27927.1  mRNA_TE_gene  pseudo  gene_syn SADHU NON-CODING RETROTRANSPOSON, SADHU5-2  gene SADHU5-2  function Member of Sadhu non-coding retrotransposon family  note Transposable element gene  
At5g27930	chr5:009959974	0.0	C/9959974-9960219,9959501-9959812,9959286-9959403,9958882-9959105,9958199-9958420	AT5G27930.1  CDS  gene_syn F15F15.3  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT3G05640.2); Has 3920 Blast hits to 3918 proteins in 223 species: Archae - 0; Bacteria - 2; Metazoa - 1223; Fungi - 465; Plants - 1295; Viruses - 5; Other Eukaryotes - 930 (source: NCBI BLink).  protein_id AT5G27930.1p  transcript_id AT5G27930.1  protein_id AT5G27930.1p  transcript_id AT5G27930.1  
At5g27930	chr5:009959974	0.0	C/9959974-9960219,9959501-9959812,9959286-9959403,9958882-9959105,9958199-9958420	AT5G27930.2  CDS  gene_syn F15F15.3  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT3G05640.2); Has 3920 Blast hits to 3918 proteins in 223 species: Archae - 0; Bacteria - 2; Metazoa - 1223; Fungi - 465; Plants - 1295; Viruses - 5; Other Eukaryotes - 930 (source: NCBI BLink).  protein_id AT5G27930.2p  transcript_id AT5G27930.2  protein_id AT5G27930.2p  transcript_id AT5G27930.2  
At5g27940	chr5:009974467	0.0	W/9974467-9974940	AT5G27940.1  CDS  gene_syn F15F15.4, WPP domain protein 3, WPP3  gene WPP3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product WPP3 (WPP domain protein 3)  note WPP domain protein 3 (WPP3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, sperm cell, root, leaf; BEST Arabidopsis thaliana protein match is: WPP2 (TAIR:AT1G47200.1); Has 79 Blast hits to 79 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G27940.1p  transcript_id AT5G27940.1  protein_id AT5G27940.1p  transcript_id AT5G27940.1  
At5g27944	chr5:009975918	0.0	C/9975918-9976592	AT5G27944.1  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700||IEA  go_function sequence-specific DNA binding|GO:0043565||IEA  product sequence-specific DNA binding / transcription factor  note sequence-specific DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL89; transcription factor (TAIR:AT5G27580.1); Has 24 Blast hits to 24 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G27944.1p  transcript_id AT5G27944.1  protein_id AT5G27944.1p  transcript_id AT5G27944.1  
At5g27945	chr5:009976007	0.0	W/9976007-9976283,9976502-9976598,9976689-9977601	AT5G27945.1  CDS  go_component anaphase-promoting complex|GO:0005680||ISS  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: anaphase-promoting complex, heterotrimeric G-protein complex; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein (TAIR:AT5G27570.1); Has 28296 Blast hits to 15278 proteins in 494 species: Archae - 48; Bacteria - 4559; Metazoa - 12422; Fungi - 5292; Plants - 2458; Viruses - 0; Other Eukaryotes - 3517 (source: NCBI BLink).  protein_id AT5G27945.1p  transcript_id AT5G27945.1  protein_id AT5G27945.1p  transcript_id AT5G27945.1  
At5g27947	chr5:009979367	0.0	C/9979367-9982856	AT5G27947.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.3e-188 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)  
At5g27950	chr5:009984774	0.0	W/9984774-9984921,9985002-9985085,9985173-9985334,9985453-9985559,9985636-9985820,9985890-9986054,9986135-9986353,9986490-9986527,9986647-9986774,9986852-9987493	AT5G27950.1  CDS  gene_syn F15F15.20, F15F15_20  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product kinesin motor protein-related  note kinesin motor protein-related; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATP binding / microtubule motor (TAIR:AT1G55550.1); Has 7669 Blast hits to 7281 proteins in 238 species: Archae - 0; Bacteria - 8; Metazoa - 3877; Fungi - 919; Plants - 883; Viruses - 0; Other Eukaryotes - 1982 (source: NCBI BLink).  protein_id AT5G27950.1p  transcript_id AT5G27950.1  protein_id AT5G27950.1p  transcript_id AT5G27950.1  
At5g27960	chr5:009992114	0.0	C/9992114-9992770,9991685-9991990	AT5G27960.1  CDS  gene_syn F15F15.30, F15F15_30  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product MADS-box protein (AGL90)  note MADS-box protein (AGL90); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: N-terminal protein myristoylation, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL36 (AGAMOUS-LIKE 36); DNA binding / transcription factor (TAIR:AT5G26650.1); Has 2917 Blast hits to 2914 proteins in 372 species: Archae - 0; Bacteria - 0; Metazoa - 513; Fungi - 115; Plants - 2251; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT5G27960.1p  transcript_id AT5G27960.1  protein_id AT5G27960.1p  transcript_id AT5G27960.1  
At5g27965	chr5:009995665	0.0	C/9995665-9999232	AT5G27965.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 5.9e-182 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At5g27967	chr5:010001590	0.0	W/10001590-10001736	AT5G27967.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G27967.1p  transcript_id AT5G27967.1  protein_id AT5G27967.1p  transcript_id AT5G27967.1  
At5g27970	chr5:010004720	0.0	W/10004720-10004824,10005070-10005255,10005344-10005472,10005773-10005843,10005961-10006116,10006387-10006496,10006907-10006963,10007065-10007414,10007533-10007585,10007849-10007918,10008189-10008246,10008363-10008511,10008610-10008737,10008822-10008879,10009044-10009141,10009234-10009318,10009459-10009524,10009594-10009653,10009807-10009893,10010011-10010128,10010331-10010374,10010461-10010589,10010699-10010830,10010918-10010970,10011066-10011114,10011224-10011282,10011409-10011548,10011636-10011814,10011921-10012049,10012115-10012200,10012348-10012463,10012552-10012664,10012760-10012883,10013057-10013178,10013258-10013429,10013505-10013679,10013968-10014292,10014381-10014520,10014832-10014950,10015029-10015230,10015342-10015429	AT5G27970.1  CDS  gene_syn F15F15.40, F15F15_40  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ATMIN7 (ARABIDOPSIS THALIANA HOPM INTERACTOR 7); guanyl-nucleotide exchange factor/ protein binding (TAIR:AT3G43300.1); Has 676 Blast hits to 482 proteins in 130 species: Archae - 0; Bacteria - 2; Metazoa - 316; Fungi - 186; Plants - 83; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT5G27970.1p  transcript_id AT5G27970.1  protein_id AT5G27970.1p  transcript_id AT5G27970.1  
At5g27980	chr5:010016536	0.0	C/10016536-10016676,10016162-10016440,10015883-10016041	AT5G27980.1  CDS  gene_syn F15F15.50, F15F15_50  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function molecular_function|GO:0003674||ND  product seed maturation family protein  note seed maturation family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: multicellular organismal development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Seed maturation protein (InterPro:IPR007011); BEST Arabidopsis thaliana protein match is: late embryogenesis abundant protein, putative / LEA protein, putative (TAIR:AT3G22490.1); Has 103 Blast hits to 86 proteins in 19 species: Archae - 0; Bacteria - 11; Metazoa - 2; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G27980.1p  transcript_id AT5G27980.1  protein_id AT5G27980.1p  transcript_id AT5G27980.1  
At5g27990	chr5:010017358	0.0	W/10017358-10017541,10017653-10017744,10017825-10017932,10018095-10018265	AT5G27990.1  CDS  gene_syn F15F15.60, F15F15_60  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22510.1); Has 226 Blast hits to 225 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 85; Fungi - 78; Plants - 26; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT5G27990.1p  transcript_id AT5G27990.1  protein_id AT5G27990.1p  transcript_id AT5G27990.1  
At5g28000	chr5:010020679	0.0	W/10020679-10020895,10020974-10021251	AT5G28000.1  CDS  gene_syn F15F15.70, F15F15_70  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product Bet v I allergen family protein  note Bet v I allergen family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: Bet v I allergen family protein (TAIR:AT5G28010.1); Has 254 Blast hits to 232 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 254; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G28000.1p  transcript_id AT5G28000.1  protein_id AT5G28000.1p  transcript_id AT5G28000.1  
At5g28010	chr5:010024813	0.0	W/10024813-10025035,10025105-10025382	AT5G28010.1  CDS  gene_syn F15F15.80, F15F15_80  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product Bet v I allergen family protein  note Bet v I allergen family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: Bet v I allergen family protein (TAIR:AT5G28000.1); Has 296 Blast hits to 273 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 296; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G28010.1p  transcript_id AT5G28010.1  protein_id AT5G28010.1p  transcript_id AT5G28010.1  
At5g28020	chr5:010027519	0.0	C/10027519-10027731,10027290-10027427,10027159-10027210,10026886-10026965,10026755-10026814,10026579-10026659,10026395-10026484	AT5G28020.5  CDS  gene_syn ATCYSD2, CYSD2, CYSTEINE SYNTHASE, CYSTEINE SYNTHASE D2, F15F15.90, F15F15_90  gene CYSD2  function Encodes cysteine synthase CysD2.  go_process metabolic process|GO:0008152||IEA  go_process cysteine biosynthetic process|GO:0019344||ISS  go_function cysteine synthase activity|GO:0004124|10845460|IMP  go_function cysteine synthase activity|GO:0004124||ISS  product CYSD2 (CYSTEINE SYNTHASE D2); catalytic/ cysteine synthase/ pyridoxal phosphate binding  note CYSTEINE SYNTHASE D2 (CYSD2); FUNCTIONS IN: cysteine synthase activity; INVOLVED IN: cysteine biosynthetic process, metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926); BEST Arabidopsis thaliana protein match is: cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative (TAIR:AT5G28030.2); Has 9643 Blast hits to 9638 proteins in 1444 species: Archae - 155; Bacteria - 5459; Metazoa - 234; Fungi - 308; Plants - 318; Viruses - 0; Other Eukaryotes - 3169 (source: NCBI BLink).  protein_id AT5G28020.5p  transcript_id AT5G28020.5  protein_id AT5G28020.5p  transcript_id AT5G28020.5  
At5g28020	chr5:010028128	0.0	C/10028128-10028166,10027871-10028038,10027519-10027782,10027290-10027427,10027159-10027210,10026886-10026965,10026755-10026814,10026579-10026659,10026395-10026484	AT5G28020.1  CDS  gene_syn ATCYSD2, CYSD2, CYSTEINE SYNTHASE, CYSTEINE SYNTHASE D2, F15F15.90, F15F15_90  gene CYSD2  function Encodes cysteine synthase CysD2.  go_process cysteine biosynthetic process from serine|GO:0006535||IEA  go_process metabolic process|GO:0008152||IEA  go_process cysteine biosynthetic process|GO:0019344||ISS  go_function cysteine synthase activity|GO:0004124|10845460|IMP  go_function cysteine synthase activity|GO:0004124||ISS  product CYSD2 (CYSTEINE SYNTHASE D2); catalytic/ cysteine synthase/ pyridoxal phosphate binding  note CYSTEINE SYNTHASE D2 (CYSD2); FUNCTIONS IN: cysteine synthase activity; INVOLVED IN: cysteine biosynthetic process from serine, cysteine biosynthetic process, metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (InterPro:IPR001216), Cysteine synthase A (InterPro:IPR005859), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Cysteine synthase K/M (InterPro:IPR005856); BEST Arabidopsis thaliana protein match is: cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative (TAIR:AT5G28030.2); Has 12700 Blast hits to 12686 proteins in 1480 species: Archae - 239; Bacteria - 7205; Metazoa - 321; Fungi - 383; Plants - 356; Viruses - 0; Other Eukaryotes - 4196 (source: NCBI BLink).  protein_id AT5G28020.1p  transcript_id AT5G28020.1  protein_id AT5G28020.1p  transcript_id AT5G28020.1  
At5g28020	chr5:010028128	0.0	C/10028128-10028166,10027871-10028038,10027519-10027782,10027290-10027427,10027159-10027210,10026886-10026965,10026755-10026814,10026579-10026659,10026395-10026484	AT5G28020.2  CDS  gene_syn ATCYSD2, CYSD2, CYSTEINE SYNTHASE, CYSTEINE SYNTHASE D2, F15F15.90, F15F15_90  gene CYSD2  function Encodes cysteine synthase CysD2.  go_process cysteine biosynthetic process from serine|GO:0006535||IEA  go_process metabolic process|GO:0008152||IEA  go_process cysteine biosynthetic process|GO:0019344||ISS  go_function cysteine synthase activity|GO:0004124|10845460|IMP  go_function cysteine synthase activity|GO:0004124||ISS  product CYSD2 (CYSTEINE SYNTHASE D2); catalytic/ cysteine synthase/ pyridoxal phosphate binding  note CYSTEINE SYNTHASE D2 (CYSD2); FUNCTIONS IN: cysteine synthase activity; INVOLVED IN: cysteine biosynthetic process from serine, cysteine biosynthetic process, metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (InterPro:IPR001216), Cysteine synthase A (InterPro:IPR005859), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Cysteine synthase K/M (InterPro:IPR005856); BEST Arabidopsis thaliana protein match is: cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative (TAIR:AT5G28030.2); Has 12700 Blast hits to 12686 proteins in 1480 species: Archae - 239; Bacteria - 7205; Metazoa - 321; Fungi - 383; Plants - 356; Viruses - 0; Other Eukaryotes - 4196 (source: NCBI BLink).  protein_id AT5G28020.2p  transcript_id AT5G28020.2  protein_id AT5G28020.2p  transcript_id AT5G28020.2  
At5g28020	chr5:010028128	0.0	C/10028128-10028166,10027871-10028038,10027519-10027782,10027290-10027427,10027159-10027210,10026886-10026965,10026755-10026814,10026579-10026659,10026395-10026484	AT5G28020.3  CDS  gene_syn ATCYSD2, CYSD2, CYSTEINE SYNTHASE, CYSTEINE SYNTHASE D2, F15F15.90, F15F15_90  gene CYSD2  function Encodes cysteine synthase CysD2.  go_process cysteine biosynthetic process from serine|GO:0006535||IEA  go_process metabolic process|GO:0008152||IEA  go_process cysteine biosynthetic process|GO:0019344||ISS  go_function cysteine synthase activity|GO:0004124|10845460|IMP  go_function cysteine synthase activity|GO:0004124||ISS  product CYSD2 (CYSTEINE SYNTHASE D2); catalytic/ cysteine synthase/ pyridoxal phosphate binding  note CYSTEINE SYNTHASE D2 (CYSD2); FUNCTIONS IN: cysteine synthase activity; INVOLVED IN: cysteine biosynthetic process from serine, cysteine biosynthetic process, metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (InterPro:IPR001216), Cysteine synthase A (InterPro:IPR005859), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Cysteine synthase K/M (InterPro:IPR005856); BEST Arabidopsis thaliana protein match is: cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative (TAIR:AT5G28030.2); Has 12700 Blast hits to 12686 proteins in 1480 species: Archae - 239; Bacteria - 7205; Metazoa - 321; Fungi - 383; Plants - 356; Viruses - 0; Other Eukaryotes - 4196 (source: NCBI BLink).  protein_id AT5G28020.3p  transcript_id AT5G28020.3  protein_id AT5G28020.3p  transcript_id AT5G28020.3  
At5g28020	chr5:010028128	0.0	C/10028128-10028166,10027871-10028038,10027519-10027782,10027290-10027427,10027159-10027210,10026886-10026965,10026755-10026814,10026579-10026659,10026395-10026484	AT5G28020.4  CDS  gene_syn ATCYSD2, CYSD2, CYSTEINE SYNTHASE, CYSTEINE SYNTHASE D2, F15F15.90, F15F15_90  gene CYSD2  function Encodes cysteine synthase CysD2.  go_process cysteine biosynthetic process from serine|GO:0006535||IEA  go_process metabolic process|GO:0008152||IEA  go_process cysteine biosynthetic process|GO:0019344||ISS  go_function cysteine synthase activity|GO:0004124|10845460|IMP  go_function cysteine synthase activity|GO:0004124||ISS  product CYSD2 (CYSTEINE SYNTHASE D2); catalytic/ cysteine synthase/ pyridoxal phosphate binding  note CYSTEINE SYNTHASE D2 (CYSD2); FUNCTIONS IN: cysteine synthase activity; INVOLVED IN: cysteine biosynthetic process from serine, cysteine biosynthetic process, metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (InterPro:IPR001216), Cysteine synthase A (InterPro:IPR005859), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Cysteine synthase K/M (InterPro:IPR005856); BEST Arabidopsis thaliana protein match is: cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative (TAIR:AT5G28030.2); Has 12700 Blast hits to 12686 proteins in 1480 species: Archae - 239; Bacteria - 7205; Metazoa - 321; Fungi - 383; Plants - 356; Viruses - 0; Other Eukaryotes - 4196 (source: NCBI BLink).  protein_id AT5G28020.4p  transcript_id AT5G28020.4  protein_id AT5G28020.4p  transcript_id AT5G28020.4  
At5g28020	chr5:010028128	0.0	C/10028128-10028166,10027871-10028038,10027519-10027782,10027290-10027427,10027159-10027210,10026886-10026965,10026755-10026814,10026579-10026659,10026395-10026484	AT5G28020.6  CDS  gene_syn ATCYSD2, CYSD2, CYSTEINE SYNTHASE, CYSTEINE SYNTHASE D2, F15F15.90, F15F15_90  gene CYSD2  function Encodes cysteine synthase CysD2.  go_process cysteine biosynthetic process from serine|GO:0006535||IEA  go_process metabolic process|GO:0008152||IEA  go_process cysteine biosynthetic process|GO:0019344||ISS  go_function cysteine synthase activity|GO:0004124|10845460|IMP  go_function cysteine synthase activity|GO:0004124||ISS  product CYSD2 (CYSTEINE SYNTHASE D2); catalytic/ cysteine synthase/ pyridoxal phosphate binding  note CYSTEINE SYNTHASE D2 (CYSD2); FUNCTIONS IN: cysteine synthase activity; INVOLVED IN: cysteine biosynthetic process from serine, cysteine biosynthetic process, metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (InterPro:IPR001216), Cysteine synthase A (InterPro:IPR005859), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Cysteine synthase K/M (InterPro:IPR005856); BEST Arabidopsis thaliana protein match is: cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative (TAIR:AT5G28030.2); Has 12700 Blast hits to 12686 proteins in 1480 species: Archae - 239; Bacteria - 7205; Metazoa - 321; Fungi - 383; Plants - 356; Viruses - 0; Other Eukaryotes - 4196 (source: NCBI BLink).  protein_id AT5G28020.6p  transcript_id AT5G28020.6  protein_id AT5G28020.6p  transcript_id AT5G28020.6  
At5g28030	chr5:010032247	0.0	C/10032247-10032285,10031966-10032133,10031497-10031760,10031271-10031408,10031134-10031185,10030979-10031058,10030849-10030908,10030680-10030760,10030493-10030582	AT5G28030.1  CDS  gene_syn F15F15.100, F15F15_100  go_process cysteine biosynthetic process from serine|GO:0006535||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function cysteine synthase activity|GO:0004124||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_process cysteine biosynthetic process|GO:0019344||ISS  go_function cysteine synthase activity|GO:0004124||ISS  product cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative  note cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative; FUNCTIONS IN: pyridoxal phosphate binding, cysteine synthase activity, catalytic activity; INVOLVED IN: cysteine biosynthetic process from serine, cysteine biosynthetic process, metabolic process; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (InterPro:IPR001216), Cysteine synthase A (InterPro:IPR005859), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Cysteine synthase K/M (InterPro:IPR005856); BEST Arabidopsis thaliana protein match is: CYSD2 (CYSTEINE SYNTHASE D2); catalytic/ cysteine synthase/ pyridoxal phosphate binding (TAIR:AT5G28020.6); Has 13951 Blast hits to 13933 proteins in 1505 species: Archae - 264; Bacteria - 8151; Metazoa - 324; Fungi - 394; Plants - 364; Viruses - 0; Other Eukaryotes - 4454 (source: NCBI BLink).  protein_id AT5G28030.1p  transcript_id AT5G28030.1  protein_id AT5G28030.1p  transcript_id AT5G28030.1  
At5g28030	chr5:010032247	0.0	C/10032247-10032285,10031966-10032133,10031497-10031760,10031271-10031408,10031134-10031185,10030979-10031058,10030849-10030908,10030680-10030760,10030493-10030582	AT5G28030.2  CDS  gene_syn F15F15.100, F15F15_100  go_process cysteine biosynthetic process from serine|GO:0006535||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function cysteine synthase activity|GO:0004124||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_process cysteine biosynthetic process|GO:0019344||ISS  go_function cysteine synthase activity|GO:0004124||ISS  product cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative  note cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative; FUNCTIONS IN: pyridoxal phosphate binding, cysteine synthase activity, catalytic activity; INVOLVED IN: cysteine biosynthetic process from serine, cysteine biosynthetic process, metabolic process; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (InterPro:IPR001216), Cysteine synthase A (InterPro:IPR005859), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Cysteine synthase K/M (InterPro:IPR005856); BEST Arabidopsis thaliana protein match is: CYSD2 (CYSTEINE SYNTHASE D2); catalytic/ cysteine synthase/ pyridoxal phosphate binding (TAIR:AT5G28020.6); Has 13951 Blast hits to 13933 proteins in 1505 species: Archae - 264; Bacteria - 8151; Metazoa - 324; Fungi - 394; Plants - 364; Viruses - 0; Other Eukaryotes - 4454 (source: NCBI BLink).  protein_id AT5G28030.2p  transcript_id AT5G28030.2  protein_id AT5G28030.2p  transcript_id AT5G28030.2  
At5g28040	chr5:010037654	0.0	C/10037654-10038937	AT5G28040.1  CDS  gene_syn F15F15.110, F15F15_110  go_function transcription regulator activity|GO:0030528|12535344|TAS  product transcription regulator  note transcription regulator; FUNCTIONS IN: transcription regulator activity; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: transcription regulator (TAIR:AT3G04930.1); Has 185 Blast hits to 182 proteins in 24 species: Archae - 0; Bacteria - 12; Metazoa - 14; Fungi - 2; Plants - 148; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT5G28040.1p  transcript_id AT5G28040.1  protein_id AT5G28040.1p  transcript_id AT5G28040.1  
At5g28050	chr5:010045412	0.0	C/10045412-10045484,10045048-10045104,10044681-10044871,10044488-10044592,10044209-10044397	AT5G28050.2  CDS  gene_syn F15F15.120, F15F15_120  go_function catalytic activity|GO:0003824||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_function zinc ion binding|GO:0008270||ISS  go_function hydrolase activity|GO:0016787||ISS  product cytidine/deoxycytidylate deaminase family protein  note cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: hydrolase activity, zinc ion binding, catalytic activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193); BEST Arabidopsis thaliana protein match is: cytidine/deoxycytidylate deaminase family protein (TAIR:AT3G05300.1); Has 5055 Blast hits to 5055 proteins in 1279 species: Archae - 43; Bacteria - 2975; Metazoa - 92; Fungi - 125; Plants - 79; Viruses - 0; Other Eukaryotes - 1741 (source: NCBI BLink).  protein_id AT5G28050.2p  transcript_id AT5G28050.2  protein_id AT5G28050.2p  transcript_id AT5G28050.2  
At5g28050	chr5:010045740	0.0	C/10045740-10045755,10045048-10045104,10044681-10044871,10044488-10044592,10044209-10044397	AT5G28050.1  CDS  gene_syn F15F15.120, F15F15_120  go_process anaerobic respiration|GO:0009061||IEA  go_process pyrimidine ribonucleotide metabolic process|GO:0009218||IEA  go_process pyrimidine deoxyribonucleoside interconversion|GO:0019690||IEA  go_process deoxyribose phosphate metabolic process|GO:0019692||IEA  go_function catalytic activity|GO:0003824||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_function zinc ion binding|GO:0008270||ISS  go_function hydrolase activity|GO:0016787||ISS  product cytidine/deoxycytidylate deaminase family protein  note cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: hydrolase activity, zinc ion binding, catalytic activity; INVOLVED IN: pyrimidine ribonucleotide metabolic process, pyrimidine deoxyribonucleoside interconversion, deoxyribose phosphate metabolic process, anaerobic respiration; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193); BEST Arabidopsis thaliana protein match is: cytidine/deoxycytidylate deaminase family protein (TAIR:AT3G05300.1); Has 5055 Blast hits to 5055 proteins in 1279 species: Archae - 43; Bacteria - 2975; Metazoa - 92; Fungi - 125; Plants - 79; Viruses - 0; Other Eukaryotes - 1741 (source: NCBI BLink).  protein_id AT5G28050.1p  transcript_id AT5G28050.1  protein_id AT5G28050.1p  transcript_id AT5G28050.1  
At5g28052	chr5:010050222	0.0	C/10050222-10050317	AT5G28052.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G28052.1p  transcript_id AT5G28052.1  protein_id AT5G28052.1p  transcript_id AT5G28052.1  
At5g28053	chr5:010050551	0.0	W/10050551-10056352	AT5G28053.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 3.3e-34 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At5g28056	chr5:010059200	0.0	C/10059200-10064669	AT5G28056.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 0. P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At5g28060	chr5:010070721	0.0	C/10070721-10070792,10070436-10070477,10070156-10070326,10069918-10070004,10069791-10069820	AT5G28060.1  CDS  gene_syn F15F15.130, F15F15_130  go_component cell wall|GO:0005618|16287169|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S24 (RPS24B)  note 40S ribosomal protein S24 (RPS24B); FUNCTIONS IN: structural constituent of ribosome, nucleotide binding; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S24e (InterPro:IPR001976), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ribosomal S24e conserved site (InterPro:IPR018098); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S24 (RPS24A) (TAIR:AT3G04920.1); Has 644 Blast hits to 644 proteins in 256 species: Archae - 59; Bacteria - 0; Metazoa - 306; Fungi - 104; Plants - 74; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT5G28060.1p  transcript_id AT5G28060.1  protein_id AT5G28060.1p  transcript_id AT5G28060.1  
At5g28065	chr5:010078024	0.0	W/10078024-10081241	AT5G28065.1  mRNA_TE_gene  pseudo  function CACTA-like transposase family (En/Spm), has a 6.4e-100 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon= Shooter (Zea mays)  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 6.4e-100 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays)  
At5g28067	chr5:010081911	0.0	C/10081911-10083044	AT5G28067.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 6.4e-88 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element)  
At5g28070	chr5:010083170	0.0	W/10083170-10083232,10083316-10083519	AT5G28070.1  CDS  gene_syn T24G3.1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G28070.1p  transcript_id AT5G28070.1  protein_id AT5G28070.1p  transcript_id AT5G28070.1  
At5g28073	chr5:010085103	0.0	C/10085103-10085726	AT5G28073.1  mRNA_TE_gene  pseudo  note Transposable element gene, hypothetical protein  
At5g28076	chr5:010086843	0.0	W/10086843-10089344	AT5G28076.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g28080	chr5:010091594	0.0	C/10091594-10091679,10091297-10091517,10091052-10091209,10090217-10090972	AT5G28080.1  CDS  gene_syn T24G3.10, T24G3_10, WNK9  gene WNK9  function Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases.  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468|12506983|TAS  go_function protein kinase activity|GO:0004672|12506983|TAS  go_function kinase activity|GO:0016301||ISS  product WNK9; kinase/ protein kinase  note WNK9; FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: WNK1 (WITH NO LYSINE (K) 1); kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT3G04910.2); Has 64008 Blast hits to 63458 proteins in 1893 species: Archae - 22; Bacteria - 3993; Metazoa - 27047; Fungi - 5835; Plants - 14444; Viruses - 303; Other Eukaryotes - 12364 (source: NCBI BLink).  protein_id AT5G28080.1p  transcript_id AT5G28080.1  protein_id AT5G28080.1p  transcript_id AT5G28080.1  
At5g28080	chr5:010092315	0.0	C/10092315-10092392,10092173-10092210,10091594-10091821,10091297-10091517,10091052-10091209,10090217-10090972	AT5G28080.2  CDS  gene_syn T24G3.10, T24G3_10, WNK9  gene WNK9  function Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases.  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468|12506983|TAS  go_function protein kinase activity|GO:0004672|12506983|TAS  go_function kinase activity|GO:0016301||ISS  product WNK9; kinase/ protein kinase  note WNK9; FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: WNK1 (WITH NO LYSINE (K) 1); kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT3G04910.1); Has 72099 Blast hits to 71455 proteins in 2101 species: Archae - 26; Bacteria - 5076; Metazoa - 30406; Fungi - 6401; Plants - 15981; Viruses - 348; Other Eukaryotes - 13861 (source: NCBI BLink).  protein_id AT5G28080.2p  transcript_id AT5G28080.2  protein_id AT5G28080.2p  transcript_id AT5G28080.2  
At5g28085	chr5:010094411	0.0	C/10094411-10098508	AT5G28085.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 3.5e-13 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)  
At5g28090	chr5:010101042	0.0	W/10101042-10101279,10101892-10102274	AT5G28090.1  CDS  gene_syn T24G3.20, T24G3_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, leaf; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G28090.1p  transcript_id AT5G28090.1  protein_id AT5G28090.1p  transcript_id AT5G28090.1  
At5g28100	chr5:010103087	0.0	C/10103087-10106860	AT5G28100.1  mRNA_TE_gene  pseudo  gene_syn T24G3.30, T24G3_30  note Transposable element gene, gypsy-like retrotransposon family, has a 4.8e-134 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At5g28110	chr5:010108331	0.0	W/10108331-10111154	AT5G28110.1  mRNA_TE_gene  pseudo  gene_syn T24G3.40, T24G3_40  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28120.1)  
At5g28120	chr5:010111393	0.0	W/10111393-10114354	AT5G28120.1  mRNA_TE_gene  pseudo  gene_syn T24G3.50, T24G3_50  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28110.1)  
At5g28130	chr5:010114433	0.0	C/10114433-10114780	AT5G28130.1  mRNA_TE_gene  pseudo  gene_syn T24G3.60, T24G3_60  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G04155.1)  
At5g28140	chr5:010115249	0.0	C/10115249-10116612	AT5G28140.1  mRNA_TE_gene  pseudo  gene_syn T24G3.70, T24G3_70  note Transposable element gene  
At5g28141	chr5:010117450	0.0	C/10117450-10118928	AT5G28141.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 5.0e-54 P-value blast match to GB:CAA38906 Tam3-transposase (hAT-element) (Antirrhinum majus)  
At5g28143	chr5:010123676	0.0	C/10123676-10124569	AT5G28143.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At5g28145	chr5:010129022	0.0	W/10129022-10133676	AT5G28145.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 4.1e-195 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)  
At5g28150	chr5:010135826	0.0	W/10135826-10136695	AT5G28150.1  CDS  gene_syn T24G3.80, T24G3_80  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF868, plant (InterPro:IPR008586); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04860.1); Has 143 Blast hits to 142 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G28150.1p  transcript_id AT5G28150.1  protein_id AT5G28150.1p  transcript_id AT5G28150.1  
At5g28160	chr5:010137926	0.0	W/10137926-10138637,10138751-10139013	AT5G28160.1  CDS  gene_syn T24G3.90, T24G3_90  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT5G28180.1); Has 555 Blast hits to 536 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 116; Fungi - 0; Plants - 439; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G28160.1p  transcript_id AT5G28160.1  protein_id AT5G28160.1p  transcript_id AT5G28160.1  
At5g28165	chr5:010140418	0.0	W/10140418-10147542	AT5G28165.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 3.1e-142 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At5g28170	chr5:010152147	0.0	W/10152147-10154734	AT5G28170.1  mRNA_TE_gene  pseudo  gene_syn F26C17.3  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G35110.1)  
At5g28173	chr5:010156026	0.0	C/10156026-10159001	AT5G28173.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 2.8e-63 P-value blast match to Q9S9L6 /322-461 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At5g28176	chr5:010160233	0.0	C/10160233-10160736	AT5G28176.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g28180	chr5:010162783	0.0	W/10162783-10163616,10163719-10163943	AT5G28180.1  CDS  gene_syn F26C17.5  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT5G28160.1); Has 805 Blast hits to 769 proteins in 67 species: Archae - 4; Bacteria - 25; Metazoa - 228; Fungi - 0; Plants - 524; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT5G28180.1p  transcript_id AT5G28180.1  protein_id AT5G28180.1p  transcript_id AT5G28180.1  
At5g28190	chr5:010170121	0.0	C/10170121-10170696,10169237-10169993,10168309-10169195,10167850-10168149	AT5G28190.1  CDS  gene_syn F26C17.6, F26C17_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 48 Blast hits to 37 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 0; Plants - 7; Viruses - 2; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT5G28190.1p  transcript_id AT5G28190.1  protein_id AT5G28190.1p  transcript_id AT5G28190.1  
At5g28200	chr5:010180092	0.0	C/10180092-10182915	AT5G28200.1  mRNA_TE_gene  pseudo  gene_syn F26C17.7, F26C17_7  note Transposable element gene, pseudogene, hypothetical protein, various predicted proteins, Arabidopsis thaliana  
At5g28210	chr5:010188586	0.0	W/10188586-10190463	AT5G28210.1  CDS  gene_syn F26C17.2, F26C17_2  go_component nucleus|GO:0005634||IEA  go_process mRNA capping|GO:0006370||IEA  go_process mRNA processing|GO:0006397||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_process dephosphorylation|GO:0016311||IEA  go_function mRNA guanylyltransferase activity|GO:0004484||IEA  go_function polynucleotide 5 -phosphatase activity|GO:0004651||IEA  go_function protein tyrosine phosphatase activity|GO:0004725||IEA  go_function protein tyrosine/serine/threonine phosphatase activity|GO:0008138||IEA  go_function phosphatase activity|GO:0016791||IEA  go_process mRNA capping|GO:0006370||ISS  go_process mRNA processing|GO:0006397||ISS  go_function mRNA guanylyltransferase activity|GO:0004484||ISS  product mRNA capping enzyme family protein  note mRNA capping enzyme family protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity, mRNA guanylyltransferase activity, polynucleotide 5 -phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation, mRNA processing, dephosphorylation, mRNA capping; LOCATED IN: nucleus; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Protein-tyrosine phosphatase (InterPro:IPR000387), mRNA capping enzyme (InterPro:IPR001339), mRNA capping enzyme, bifunctional (InterPro:IPR017074), Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Protein-tyrosine phosphatase, dual specificity (InterPro:IPR000340), mRNA capping enzyme, C-terminal (InterPro:IPR013846); BEST Arabidopsis thaliana protein match is: mRNA guanylyltransferase/ phosphatase/ polynucleotide 5 -phosphatase/ protein tyrosine phosphatase/ protein tyrosine/serine/threonine phosphatase (TAIR:AT5G01290.1); Has 656 Blast hits to 643 proteins in 180 species: Archae - 0; Bacteria - 2; Metazoa - 236; Fungi - 147; Plants - 37; Viruses - 65; Other Eukaryotes - 169 (source: NCBI BLink).  protein_id AT5G28210.1p  transcript_id AT5G28210.1  protein_id AT5G28210.1p  transcript_id AT5G28210.1  
At5g28220	chr5:010192829	0.0	C/10192829-10193054,10192250-10192314,10191850-10191898,10191555-10191649,10191398-10191483,10191255-10191314,10191099-10191180,10190894-10191007,10190626-10190799	AT5G28220.1  CDS  gene_syn F26C17.8, F26C17_8  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT3G04830.1); Has 387 Blast hits to 385 proteins in 147 species: Archae - 20; Bacteria - 17; Metazoa - 192; Fungi - 72; Plants - 23; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT5G28220.1p  transcript_id AT5G28220.1  protein_id AT5G28220.1p  transcript_id AT5G28220.1  
At5g28225	chr5:010193379	0.0	C/10193379-10194578	AT5G28225.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to putative helicase, blastp match of 54% identity and 2.1e-37 P-value to GP|21104536|dbj|BAB93131.1||AP003196 putative helicase {Oryza sativa (japonica cultivar-group)}  
At5g28230	chr5:010195174	0.0	C/10195174-10196616	AT5G28230.1  pseudogenic_transcript  pseudo  gene_syn F26C17.50, F26C17_50  note pseudogene, similar to glucose-6-phosphate/phosphate-translocator precursor, contains similarity to glucose-6-phosphate/phosphate-translocator precursors; blastp match of 78% identity and 1.6e-75 P-value to GP|2997591|gb|AAC08525.1||AF020814 glucose-6-phosphate/phosphate-translocator precursor {Pisum sativum}  
At5g28232	chr5:010198747	0.0	W/10198747-10201299	AT5G28232.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 2.1e-85 P-value blast match to Q9S9L1 /206-367 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At5g28235	chr5:010203099	0.0	C/10203099-10203335,10202739-10203008,10202023-10202645,10201850-10201958,10201271-10201738	AT5G28235.1  CDS  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_component cellular_component|GO:0005575||ND  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product Ulp1 protease family protein  note Ulp1 protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: Ulp1 protease family protein (TAIR:AT5G45570.1); Has 715 Blast hits to 635 proteins in 121 species: Archae - 6; Bacteria - 72; Metazoa - 199; Fungi - 59; Plants - 70; Viruses - 2; Other Eukaryotes - 307 (source: NCBI BLink).  protein_id AT5G28235.1p  transcript_id AT5G28235.1  protein_id AT5G28235.1p  transcript_id AT5G28235.1  
At5g28237	chr5:010213228	0.0	C/10213228-10213542,10212324-10212689,10209099-10209532,10208559-10208653,10207477-10207664	AT5G28237.1  CDS  go_process tryptophan metabolic process|GO:0006568||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function tryptophan synthase activity|GO:0004834||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_process tryptophan biosynthetic process|GO:0000162||ISS  go_function tryptophan synthase activity|GO:0004834||ISS  product tryptophan synthase, beta subunit, putative  note tryptophan synthase, beta subunit, putative; FUNCTIONS IN: pyridoxal phosphate binding, tryptophan synthase activity, catalytic activity; INVOLVED IN: tryptophan biosynthetic process, metabolic process, tryptophan metabolic process; CONTAINS InterPro DOMAIN/s: Tryptophan synthase, beta chain (InterPro:IPR006654), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Tryptophan synthase, beta chain, conserved site (InterPro:IPR006653); BEST Arabidopsis thaliana protein match is: TSB1 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 1); tryptophan synthase (TAIR:AT5G54810.1); Has 9760 Blast hits to 9760 proteins in 1521 species: Archae - 280; Bacteria - 4717; Metazoa - 48; Fungi - 179; Plants - 88; Viruses - 0; Other Eukaryotes - 4448 (source: NCBI BLink).  protein_id AT5G28237.1p  transcript_id AT5G28237.1  protein_id AT5G28237.1p  transcript_id AT5G28237.1  
At5g28240	chr5:010216253	0.0	W/10216253-10216783	AT5G28240.1  mRNA_TE_gene  pseudo  gene_syn T8M17.10, T8M17_10  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G35770.1)  
At5g28250	chr5:010219023	0.0	W/10219023-10224680	AT5G28250.1  mRNA_TE_gene  pseudo  gene_syn T8M17.20, T8M17_20  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G07240.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At5g28253	chr5:010227600	0.0	C/10227600-10230967	AT5G28253.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 1.2e-60 P-value blast match to Q9SHN7 /450-633 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At5g28260	chr5:010235176	0.0	C/10235176-10236006	AT5G28260.1  mRNA_TE_gene  pseudo  gene_syn T8M17.30, T8M17_30  note Transposable element gene, pseudogene, hypothetical protein  
At5g28262	chr5:010238550	0.0	W/10238550-10239773	AT5G28262.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G28262.1  
At5g28263	chr5:010241337	0.0	W/10241337-10256531	AT5G28263.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 4.6e-72 P-value blast match to Q9SL18 /349-510 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At5g28266	chr5:010256936	0.0	W/10256936-10257890	AT5G28266.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, includes At2g06610, At5g28266, At3g42620, At4g07696, At2g06690, At2g16160, At2g05480, At2g12140, At1g45080, At2g16330  
At5g28270	chr5:010258090	0.0	C/10258090-10260471	AT5G28270.1  mRNA_TE_gene  pseudo  gene_syn T8M17.40, T8M17_40  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28480.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G12100.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G45090.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1)  
At5g28280	chr5:010261017	0.0	W/10261017-10263283	AT5G28280.1  pseudogenic_transcript  pseudo  gene_syn T8M17.50, T8M17_50  note pseudogene, sterol desaturase domain-containing protein, CER1-like, A.thaliana, ATCER1L19; blastp match of 55% identity and 8.9e-22 P-value to GP|4769012|gb|AAD29719.1|AF143746_1|AF143746 CER1 {Oryza sativa}  
At5g28285	chr5:010264891	0.0	C/10264891-10268620	AT5G28285.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 9.8e-101 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota)  
At5g28287	chr5:010275172	0.0	C/10275172-10275542	AT5G28287.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At5g28288	chr5:010276539	0.0	C/10276539-10276626,10276243-10276409	AT5G28288.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G13542.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G28288.1p  transcript_id AT5G28288.1  protein_id AT5G28288.1p  transcript_id AT5G28288.1  
At5g28290	chr5:010281795	0.0	C/10281795-10281880,10281615-10281681,10281317-10281382,10281172-10281218,10281040-10281085,10280870-10280950,10280747-10280789,10280617-10280666,10280459-10280540,10280314-10280363,10280149-10280222,10280004-10280055,10279552-10279920,10278880-10279473	AT5G28290.1  CDS  gene_syn ATNEK3, NIMA-RELATED KINASE3, T8M17.60, T8M17_60  gene ATNEK3  function Encodes AtNek3, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes.  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product ATNEK3 (NIMA-RELATED KINASE3); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note NIMA-RELATED KINASE3 (ATNEK3); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATNEK2 (NIMA-RELATED KINASE 2); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT3G04810.2); Has 91003 Blast hits to 89365 proteins in 2634 species: Archae - 52; Bacteria - 8079; Metazoa - 39176; Fungi - 8180; Plants - 17691; Viruses - 459; Other Eukaryotes - 17366 (source: NCBI BLink).  protein_id AT5G28290.1p  transcript_id AT5G28290.1  protein_id AT5G28290.1p  transcript_id AT5G28290.1  
At5g28295	chr5:010283460	0.0	C/10283460-10283777,10283282-10283359	AT5G28295.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G28295.1p  transcript_id AT5G28295.1  protein_id AT5G28295.1p  transcript_id AT5G28295.1  
At5g28300	chr5:010294707	0.0	C/10294707-10295101,10292789-10294253	AT5G28300.1  CDS  gene_syn T8M17.70, T8M17_70  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product trihelix DNA-binding protein, putative  note trihelix DNA-binding protein, putative; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: trihelix DNA-binding protein, putative (TAIR:AT1G76880.1); Has 7108 Blast hits to 5274 proteins in 247 species: Archae - 2; Bacteria - 145; Metazoa - 704; Fungi - 277; Plants - 411; Viruses - 16; Other Eukaryotes - 5553 (source: NCBI BLink).  protein_id AT5G28300.1p  transcript_id AT5G28300.1  protein_id AT5G28300.1p  transcript_id AT5G28300.1  
At5g28310	chr5:010301705	0.0	C/10301705-10301844,10301510-10301625,10300679-10300763,10300464-10300611,10300317-10300370,10300117-10300275	AT5G28310.1  CDS  gene_syn T8M17.80, T8M17_80  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_function cofactor binding|GO:0048037||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product oxidoreductase-related  note oxidoreductase-related; FUNCTIONS IN: oxidoreductase activity, binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, catalytic activity, cofactor binding; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: oxidoreductase family protein (TAIR:AT2G45630.2); Has 2046 Blast hits to 2045 proteins in 536 species: Archae - 67; Bacteria - 1284; Metazoa - 31; Fungi - 72; Plants - 77; Viruses - 0; Other Eukaryotes - 515 (source: NCBI BLink).  protein_id AT5G28310.1p  transcript_id AT5G28310.1  protein_id AT5G28310.1p  transcript_id AT5G28310.1  
At5g28320	chr5:010301936	0.0	W/10301936-10302087,10302186-10302352,10302460-10302572,10302638-10302898,10302937-10303813,10303925-10304075,10304134-10304267,10304535-10305065,10305162-10305223,10305319-10305627,10306005-10306142	AT5G28320.1  CDS  gene_syn T8M17.90, T8M17_90  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28400.1); Has 2164 Blast hits to 1682 proteins in 217 species: Archae - 16; Bacteria - 99; Metazoa - 828; Fungi - 161; Plants - 102; Viruses - 7; Other Eukaryotes - 951 (source: NCBI BLink).  protein_id AT5G28320.1p  transcript_id AT5G28320.1  protein_id AT5G28320.1p  transcript_id AT5G28320.1  
At5g28330	chr5:010307169	0.0	W/10307169-10308142	AT5G28330.1  pseudogenic_transcript  pseudo  gene_syn T8M17.100, T8M17_100  note pseudogene, RNA recognition motif (RRM) - containing protein, contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); blastp match of 59% identity and 2.3e-35 P-value to GP|29371361|gb|AAO72701.1||AY224581 putative RNA-binding protein {Oryza sativa (japonica cultivar-group)}  
At5g28335	chr5:010308601	0.0	C/10308601-10313586	AT5G28335.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 4.8e-178 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At5g28340	chr5:010314118	0.0	W/10314118-10314129,10314503-10314622,10314695-10314763,10314853-10314926,10315444-10315527,10316212-10317160	AT5G28340.1  CDS  gene_syn T8M17.110, T8M17_110  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G28380.1); Has 3029 Blast hits to 1607 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 3009; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT5G28340.1p  transcript_id AT5G28340.1  protein_id AT5G28340.1p  transcript_id AT5G28340.1  
At5g28350	chr5:010320301	0.0	W/10320301-10320447,10320540-10320647,10320959-10321107,10321220-10321301,10321380-10321792,10322059-10322491,10322581-10322804,10323008-10323203,10323327-10323469,10323542-10323716,10323900-10323953,10324130-10324309,10324439-10324551,10324675-10324857,10325049-10325106,10325328-10325387,10325487-10325528,10325624-10325751,10325849-10325984,10326073-10326150,10326326-10326442,10326534-10326596,10326680-10326781	AT5G28350.1  CDS  gene_syn F21B23.3, F21B23_3  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1339 (InterPro:IPR009771), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943), Quinoprotein amine dehydrogenase, beta chain-like (InterPro:IPR011044); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61480.1); Has 271 Blast hits to 226 proteins in 106 species: Archae - 0; Bacteria - 9; Metazoa - 133; Fungi - 64; Plants - 30; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT5G28350.1p  transcript_id AT5G28350.1  protein_id AT5G28350.1p  transcript_id AT5G28350.1  
At5g28350	chr5:010320301	0.0	W/10320301-10320447,10320540-10320647,10321079-10321107,10321220-10321301,10321380-10321792,10322059-10322491,10322581-10322804,10323008-10323203,10323327-10323469,10323542-10323716,10323900-10323953,10324130-10324309,10324439-10324551,10324675-10324857,10325049-10325106,10325328-10325387,10325487-10325528,10325624-10325751,10325849-10325984,10326073-10326150,10326326-10326442,10326534-10326596,10326680-10326781	AT5G28350.2  CDS  gene_syn F21B23.3, F21B23_3  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1339 (InterPro:IPR009771), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943), Quinoprotein amine dehydrogenase, beta chain-like (InterPro:IPR011044); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61480.1); Has 239 Blast hits to 219 proteins in 105 species: Archae - 0; Bacteria - 7; Metazoa - 106; Fungi - 64; Plants - 29; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT5G28350.2p  transcript_id AT5G28350.2  protein_id AT5G28350.2p  transcript_id AT5G28350.2  
At5g28360	chr5:010329535	0.0	C/10329535-10329702,10329303-10329434,10328882-10329046,10328403-10328444	AT5G28360.1  CDS  gene_syn 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE, ACS3, F21B23.5, F21B23_5  gene ACS3  function a pseudogene belonging to the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family. Transcript has not been detected.  go_process biosynthetic process|GO:0009058||IEA  go_function catalytic activity|GO:0003824||IEA  go_function transferase activity, transferring nitrogenous groups|GO:0016769||IEA  go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_process biosynthetic process|GO:0009058||ISS  go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847||ISS  product ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE); 1-aminocyclopropane-1-carboxylate synthase/ catalytic/ pyridoxal phosphate binding / transferase, transferring nitrogenous groups  note 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE (ACS3); FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, catalytic activity; INVOLVED IN: biosynthetic process; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase, class I and II (InterPro:IPR004839), 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: ACS1 (ACC SYNTHASE 1); 1-aminocyclopropane-1-carboxylate synthase (TAIR:AT3G61510.1); Has 826 Blast hits to 826 proteins in 226 species: Archae - 2; Bacteria - 146; Metazoa - 60; Fungi - 54; Plants - 536; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT5G28360.1p  transcript_id AT5G28360.1  protein_id AT5G28360.1p  transcript_id AT5G28360.1  
At5g28370	chr5:010332375	0.0	C/10332375-10334558	AT5G28370.1  CDS  gene_syn F21B23.6, F21B23_6  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G28460.1); Has 22506 Blast hits to 6026 proteins in 190 species: Archae - 7; Bacteria - 27; Metazoa - 841; Fungi - 534; Plants - 20012; Viruses - 0; Other Eukaryotes - 1085 (source: NCBI BLink).  protein_id AT5G28370.1p  transcript_id AT5G28370.1  protein_id AT5G28370.1p  transcript_id AT5G28370.1  
At5g28380	chr5:010340957	0.0	C/10340957-10341007,10340785-10340867,10340356-10340445,10338723-10339671	AT5G28380.1  CDS  gene_syn F21B23.50, F21B23_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G28340.1); Has 3010 Blast hits to 1585 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 2995; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT5G28380.1p  transcript_id AT5G28380.1  protein_id AT5G28380.1p  transcript_id AT5G28380.1  
At5g28390	chr5:010342902	0.0	C/10342902-10342997,10342537-10342744,10342421-10342437,10342246-10342331,10342024-10342159	AT5G28390.1  CDS  gene_syn F21B23.40, F21B23_40  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT3G52660.2); Has 698 Blast hits to 694 proteins in 103 species: Archae - 0; Bacteria - 2; Metazoa - 458; Fungi - 16; Plants - 168; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT5G28390.1p  transcript_id AT5G28390.1  protein_id AT5G28390.1p  transcript_id AT5G28390.1  
At5g28400	chr5:010348152	0.0	C/10348152-10348234,10347965-10348042,10347697-10347800,10346375-10347606,10346091-10346287,10345793-10346038,10345087-10345621,10344539-10344847,10344024-10344161	AT5G28400.1  CDS  gene_syn F21B23.8, F21B23_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28320.1); Has 2377 Blast hits to 1834 proteins in 216 species: Archae - 21; Bacteria - 106; Metazoa - 852; Fungi - 173; Plants - 100; Viruses - 13; Other Eukaryotes - 1112 (source: NCBI BLink).  protein_id AT5G28400.1p  transcript_id AT5G28400.1  protein_id AT5G28400.1p  transcript_id AT5G28400.1  
At5g28405	chr5:010350541	0.0	C/10350541-10354653	AT5G28405.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 7.9e-30 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)  
At5g28410	chr5:010358373	0.0	W/10358373-10358441,10358688-10358733,10358831-10358944,10359236-10359297,10359409-10359438	AT5G28410.1  CDS  gene_syn F21B23.2, F21B23_2  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 6 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G28410.1p  transcript_id AT5G28410.1  protein_id AT5G28410.1p  transcript_id AT5G28410.1  
At5g28415	chr5:010359592	0.0	C/10359592-10364018	AT5G28415.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.2e-302 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element)  
At5g28420	chr5:010364834	0.0	W/10364834-10365289	AT5G28420.1  CDS  gene_syn F21B23.80, F21B23_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44935.1); Has 81 Blast hits to 79 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G28420.1p  transcript_id AT5G28420.1  protein_id AT5G28420.1p  transcript_id AT5G28420.1  
At5g28430	chr5:010365742	0.0	C/10365742-10367421	AT5G28430.1  mRNA_TE_gene  pseudo  gene_syn F21B23.9, F21B23_9  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G60930.2)  
At5g28440	chr5:010368874	0.0	C/10368874-10369014,10368693-10368783,10368533-10368633,10368252-10368317,10367940-10368173,10367671-10367868	AT5G28440.1  CDS  gene_syn F21B23.100, F21B23_100  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28350.2); Has 26 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G28440.1p  transcript_id AT5G28440.1  protein_id AT5G28440.1p  transcript_id AT5G28440.1  
At5g28450	chr5:010374039	0.0	C/10374039-10374190,10373866-10373930,10373083-10373369,10372978-10372995	AT5G28450.1  CDS  gene_syn F21B23.110, F21B23_110  go_component chloroplast|GO:0009507||IEA  go_component membrane|GO:0016020||IEA  go_process photosynthesis, light harvesting|GO:0009765||IEA  go_component light-harvesting complex|GO:0030076||ISS  go_process photosynthesis|GO:0015979||ISS  go_function chlorophyll binding|GO:0016168||ISS  product chlorophyll A-B binding protein, chloroplast, putative / LHCI type II CAB, putative  note chlorophyll A-B binding protein, chloroplast, putative / LHCI type II CAB, putative; FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast, membrane; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: LHCA2; chlorophyll binding (TAIR:AT3G61470.1); Has 1521 Blast hits to 1472 proteins in 174 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1354; Viruses - 0; Other Eukaryotes - 165 (source: NCBI BLink).  protein_id AT5G28450.1p  transcript_id AT5G28450.1  protein_id AT5G28450.1p  transcript_id AT5G28450.1  
At5g28460	chr5:010374927	0.0	W/10374927-10377227	AT5G28460.1  CDS  gene_syn F21B23.1, F21B23_1  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G61520.1); Has 22791 Blast hits to 6036 proteins in 191 species: Archae - 5; Bacteria - 24; Metazoa - 848; Fungi - 552; Plants - 20226; Viruses - 0; Other Eukaryotes - 1136 (source: NCBI BLink).  protein_id AT5G28460.1p  transcript_id AT5G28460.1  protein_id AT5G28460.1p  transcript_id AT5G28460.1  
At5g28463	chr5:010379446	0.0	W/10379446-10379690,10379947-10380097	AT5G28463.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G28463.1p  transcript_id AT5G28463.1  protein_id AT5G28463.1p  transcript_id AT5G28463.1  
At5g28465	chr5:010397382	0.0	C/10397382-10397486	AT5G28465.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G28465.1p  transcript_id AT5G28465.1  protein_id AT5G28465.1p  transcript_id AT5G28465.1  
At5g28464	chr5:010398191	0.0	W/10398191-10400049	AT5G28464.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 9.6e-23 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At5g28466	chr5:010401020	0.0	C/10401020-10401740	AT5G28466.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 5.2e-14 P-value blast match to GB:AAC24836 pol polyprotein (Ty1_Copia-element) (Candida albicans)  
At5g28468	chr5:010406988	0.0	W/10406988-10409696	AT5G28468.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 8.9e-46 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At5g28469	chr5:010415551	0.0	C/10415551-10416093	AT5G28469.1  pseudogenic_transcript  pseudo  function pseudogene of disease-resistance protein  
At5g28470	chr5:010429813	0.0	W/10429813-10429897,10429979-10430196,10430274-10430821,10431433-10431818,10431915-10432357	AT5G28470.1  CDS  gene_syn F24J2.10, F24J2_10  go_component membrane|GO:0016020||IEA  go_process oligopeptide transport|GO:0006857||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function transporter activity|GO:0005215||ISS  product transporter  note transporter; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: leaf whorl, petal, male gametophyte, sepal, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT1G69870.1); Has 2095 Blast hits to 2039 proteins in 337 species: Archae - 0; Bacteria - 300; Metazoa - 430; Fungi - 207; Plants - 1106; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT5G28470.1p  transcript_id AT5G28470.1  protein_id AT5G28470.1p  transcript_id AT5G28470.1  
At5g28480	chr5:010433337	0.0	W/10433337-10438292	AT5G28480.1  mRNA_TE_gene  pseudo  gene_syn F24J2.20, F24J2_20  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28270.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G12100.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G45090.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Collagen triple helix repeat; (InterPro:IPR008160)  
At5g28482	chr5:010439271	0.0	W/10439271-10439966	AT5G28482.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G12120.1); similar to hypothetical protein 40.t00047 [Brassica oleracea] (GB:ABD65162.1)  
At5g28484	chr5:010440639	0.0	W/10440639-10441293	AT5G28484.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G06700.1)  
At5g28487	chr5:010441691	0.0	C/10441691-10445995	AT5G28487.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 2.5e-79 P-value blast match to Q9SL18 /349-510 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At5g28490	chr5:010454541	0.0	C/10454541-10455113	AT5G28490.1  CDS  gene_syn F24J2.30, F24J2_30, LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, LSH1  gene LSH1  function Encodes a nuclear protein that mediates light regulation of seedling development in a phytochrome-dependent manner.  go_component nucleus|GO:0005634|14871309|IDA  go_process response to light stimulus|GO:0009416|14871309|IMP  go_process response to blue light|GO:0009637|14871309|IGI  go_process unidimensional cell growth|GO:0009826|14871309|IMP  go_process response to red light|GO:0010114|14871309|IGI  go_process response to far red light|GO:0010218|14871309|IGI  go_function molecular_function|GO:0003674||ND  product LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1)  note LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 (LSH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to blue light, response to light stimulus, response to red light, response to far red light, unidimensional cell growth; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: seedling growth, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2) (TAIR:AT3G04510.1); Has 185 Blast hits to 185 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G28490.1p  transcript_id AT5G28490.1  protein_id AT5G28490.1p  transcript_id AT5G28490.1  
At5g28491	chr5:010455682	0.0	C/10455682-10455807	AT5G28491.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G28491.1p  transcript_id AT5G28491.1  protein_id AT5G28491.1p  transcript_id AT5G28491.1  
At5g28495	chr5:010463556	0.0	W/10463556-10467339	AT5G28495.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 8.8e-77 P-value blast match to gb|AAL06416.1|AF378057_1 reverse transcriptase (Sorghum bicolor) (Gypsy_Ty3-family)  
At5g28497	chr5:010470258	0.0	C/10470258-10471578	AT5G28497.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At5g28500	chr5:010477810	0.0	W/10477810-10479114	AT5G28500.1  CDS  gene_syn T26D3.4, T26D3_4  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04550.1); Has 79 Blast hits to 79 proteins in 36 species: Archae - 0; Bacteria - 52; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G28500.1p  transcript_id AT5G28500.1  protein_id AT5G28500.1p  transcript_id AT5G28500.1  
At5g28510	chr5:010483849	0.0	C/10483849-10484022,10483679-10483748,10483503-10483558,10483176-10483251,10482988-10483065,10482794-10482881,10482332-10482602,10482135-10482250,10481846-10482063,10481722-10481756,10481525-10481627,10481332-10481440,10481041-10481248	AT5G28510.1  CDS  gene_syn BETA GLUCOSIDASE 24, BGLU24, T26D3.6, T26D3_6  gene BGLU24  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU24 (BETA GLUCOSIDASE 24); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 24 (BGLU24); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: PYK10; beta-glucosidase/ copper ion binding / fucosidase/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT3G09260.1); Has 5778 Blast hits to 5528 proteins in 797 species: Archae - 98; Bacteria - 3150; Metazoa - 608; Fungi - 134; Plants - 846; Viruses - 0; Other Eukaryotes - 942 (source: NCBI BLink).  protein_id AT5G28510.1p  transcript_id AT5G28510.1  protein_id AT5G28510.1p  transcript_id AT5G28510.1  
At5g28515	chr5:010491994	0.0	W/10491994-10492514	AT5G28515.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g28520	chr5:010493110	0.0	W/10493110-10493304,10493408-10493851,10493973-10494437,10494595-10494852	AT5G28520.1  CDS  gene_syn T26D3.3, T26D3_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin lectin family protein (TAIR:AT1G33790.2); Has 929 Blast hits to 421 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 929; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G28520.1p  transcript_id AT5G28520.1  protein_id AT5G28520.1p  transcript_id AT5G28520.1  
At5g28523	chr5:010497296	0.0	W/10497296-10502802	AT5G28523.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 8.9e-31 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At5g28524	chr5:010508115	0.0	C/10508115-10508919	AT5G28524.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp1/En/Spm), has a 8.8e-34 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)  
At5g28525	chr5:010511290	0.0	W/10511290-10512803	AT5G28525.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At5g28527	chr5:010513366	0.0	W/10513366-10514577	AT5G28527.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At5g28526	chr5:010515532	0.0	C/10515532-10521998	AT5G28526.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp1/En/Spm), has a 7.1e-289 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)  
At5g28530	chr5:010526278	0.0	C/10526278-10527300,10525745-10526188,10525078-10525668	AT5G28530.1  CDS  gene_syn FAR1-related sequence 10, FRS10, T26D3.9, T26D3_9  gene FRS10  go_function zinc ion binding|GO:0008270||IEA  go_process response to red or far red light|GO:0009639||ISS  product FRS10 (FAR1-related sequence 10); zinc ion binding  note FAR1-related sequence 10 (FRS10); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527), MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330); BEST Arabidopsis thaliana protein match is: FRS11 (FAR1-related sequence 11); zinc ion binding (TAIR:AT1G10240.1); Has 733 Blast hits to 660 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 46; Plants - 686; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G28530.1p  transcript_id AT5G28530.1  protein_id AT5G28530.1p  transcript_id AT5G28530.1  
At5g28535	chr5:010534818	0.0	W/10534818-10536025	AT5G28535.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mariner-like transposase family, has a 1.2e-97 P-value blast match to GB:AAC28384 mariner transposase (Mariner_TC1-element) (Glycine max)  
At5g28540	chr5:010543220	0.0	C/10543220-10543274,10542782-10543049,10542489-10542703,10542154-10542396,10541266-10541983,10540665-10541175	AT5G28540.1  CDS  gene_syn BIP1, T26D3.10, T26D3_10  gene BIP1  function Encodes the luminal binding protein BiP, an ER-localized member of the HSP70 family. BiP is composed of an N-terminal ATP binding domain and a C-terminal domain that binds to hydrophobic patches on improperly/incompletely folded proteins in an ATP-dependent manner.  go_component cell wall|GO:0005618|16287169|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_function ATP binding|GO:0005524||IEA  go_component endoplasmic reticulum lumen|GO:0005788|11402207|TAS  go_process protein folding|GO:0006457|11402207|TAS  go_process protein folding|GO:0006457||ISS  go_process response to heat|GO:0009408|8888624|IDA  go_process ER-associated protein catabolic process|GO:0030433|19060110|IMP  product BIP1; ATP binding  note BIP1; FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, ER-associated protein catabolic process, response to heat; LOCATED IN: cell wall, plasma membrane, chloroplast, vacuole, endoplasmic reticulum lumen; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: BIP2; ATP binding (TAIR:AT5G42020.1); Has 26780 Blast hits to 26235 proteins in 3101 species: Archae - 106; Bacteria - 10248; Metazoa - 3373; Fungi - 1261; Plants - 717; Viruses - 271; Other Eukaryotes - 10804 (source: NCBI BLink).  protein_id AT5G28540.1p  transcript_id AT5G28540.1  protein_id AT5G28540.1p  transcript_id AT5G28540.1  
At5g28545	chr5:010547746	0.0	C/10547746-10553612	AT5G28545.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.7e-08 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At5g28550	chr5:010559670	0.0	C/10559670-10559779,10559425-10559505,10558770-10558914,10558587-10558712,10558180-10558473,10557722-10557826	AT5G28550.1  CDS  gene_syn T10I18.10, T10I18_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: AESP (ARABIDOPSIS HOMOLOG OF SEPARASE); peptidase (TAIR:AT4G22970.1); Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G28550.1p  transcript_id AT5G28550.1  protein_id AT5G28550.1p  transcript_id AT5G28550.1  
At5g28560	chr5:010566846	0.0	W/10566846-10566902,10566996-10567130	AT5G28560.1  CDS  gene_syn T10I18.20, T10I18_20  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G28560.1p  transcript_id AT5G28560.1  protein_id AT5G28560.1p  transcript_id AT5G28560.1  
At5g28570	chr5:010574621	0.0	W/10574621-10575159	AT5G28570.1  mRNA_TE_gene  pseudo  gene_syn T10I18.4, T10I18_4  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G12725.1); similar to GRF zinc finger containing protein [Brassica oleracea] (GB:ABD64950.1)  
At5g28580	chr5:010575495	0.0	C/10575495-10578143	AT5G28580.2  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 7.3e-33 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At5g28590	chr5:010581489	0.0	C/10581489-10581559,10580525-10580576,10580278-10580394,10579889-10579993,10579446-10579751	AT5G28590.1  CDS  gene_syn T10I18.50, T10I18_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DNA-binding protein-related  note DNA-binding protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175); BEST Arabidopsis thaliana protein match is: DNA-binding family protein (TAIR:AT3G04590.2); Has 399 Blast hits to 396 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 397; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G28590.1p  transcript_id AT5G28590.1  protein_id AT5G28590.1p  transcript_id AT5G28590.1  
At5g28593	chr5:010583773	0.0	W/10583773-10587294	AT5G28593.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.6e-78 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g28596	chr5:010589694	0.0	W/10589694-10592511	AT5G28596.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.8e-286 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g28600	chr5:010597809	0.0	W/10597809-10603450	AT5G28600.1  mRNA_TE_gene  pseudo  gene_syn T10I18.60, T10I18_60  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G35770.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1)  
At5g28605	chr5:010604857	0.0	C/10604857-10607910	AT5G28605.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 2.3e-44 P-value blast match to Q9SHN7 /450-633 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At5g28610	chr5:010610976	0.0	W/10610976-10611347	AT5G28610.1  CDS  gene_syn T10I18.2, T10I18_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, hypocotyl, root, seed, leaf; EXPRESSED DURING: E expanded cotyledon stage, LP.12 twelve leaves visible; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT5G28630.1); Has 1909 Blast hits to 1356 proteins in 121 species: Archae - 0; Bacteria - 8; Metazoa - 1295; Fungi - 112; Plants - 60; Viruses - 39; Other Eukaryotes - 395 (source: NCBI BLink).  protein_id AT5G28610.1p  transcript_id AT5G28610.1  protein_id AT5G28610.1p  transcript_id AT5G28610.1  
At5g28615	chr5:010611971	0.0	W/10611971-10611980,10612062-10612501	AT5G28615.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G04650.1); Has 77 Blast hits to 77 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G28615.1p  transcript_id AT5G28615.1  protein_id AT5G28615.1p  transcript_id AT5G28615.1  
At5g28620	chr5:010612813	0.0	C/10612813-10613004,10612529-10612729	AT5G28620.1  CDS  gene_syn T10I18.80, T10I18_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein kinase C-related  note protein kinase C-related; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G28620.1p  transcript_id AT5G28620.1  protein_id AT5G28620.1p  transcript_id AT5G28620.1  
At5g28622	chr5:010616594	0.0	W/10616594-10617598	AT5G28622.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.1e-21 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)  
At5g28623	chr5:010621961	0.0	C/10621961-10622671	AT5G28623.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G44570.1); similar to hypothetical protein 26.t00034 [Brassica oleracea] (GB:ABD65011.1)  
At5g28624	chr5:010623341	0.0	C/10623341-10629148	AT5G28624.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.1e-145 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g28625	chr5:010630020	0.0	W/10630020-10630445	AT5G28625.1  pseudogenic_transcript  pseudo  note pseudogene, similar to putative reverse transcriptase, blastp match of 48% identity and 3.5e-07 P-value to GP|13786450|gb|AAK39575.1|AC025296_10|AC025296 putative reverse transcriptase {Oryza sativa}  
At5g28626	chr5:010632241	0.0	W/10632241-10633944	AT5G28626.1  mRNA_TE_gene  pseudo  gene_syn SADHU NON-CODING RETROTRANSPOSON, SADHU1-3  gene SADHU1-3  function Member of Sadhu non-coding retrotransposon family  note Transposable element gene  
At5g28627	chr5:010634056	0.0	W/10634056-10635268	AT5G28627.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to oj991113_30.20, blastp match of 38% identity and 1.9e-08 P-value to GP|21741715|emb|CAD41338.1||AL662946 oj991113_30.20 {Oryza sativa (japonica cultivar-group)}  
At5g28630	chr5:010636690	0.0	W/10636690-10637136	AT5G28630.1  CDS  gene_syn F4I4.10, F4I4_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, LP.12 twelve leaves visible, LP.08 eight leaves visible; Has 3483 Blast hits to 2139 proteins in 207 species: Archae - 6; Bacteria - 50; Metazoa - 2109; Fungi - 294; Plants - 230; Viruses - 144; Other Eukaryotes - 650 (source: NCBI BLink).  protein_id AT5G28630.1p  transcript_id AT5G28630.1  protein_id AT5G28630.1p  transcript_id AT5G28630.1  
At5g28635	chr5:010637834	0.0	W/10637834-10643194	AT5G28635.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 5.1e-162 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At5g28637	chr5:010645026	0.0	C/10645026-10646093	AT5G28637.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 1.1e-23 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At5g28640	chr5:010649540	0.0	C/10649540-10649620,10648465-10648541,10648301-10648385,10647831-10648220	AT5G28640.1  CDS  gene_syn AN3, ANGUSTIFOLIA 3, F4I4.20, F4I4_20, GIF, GIF1, GRF1-INTERACTING FACTOR, GRF1-INTERACTING FACTOR 1  gene AN3  function Encodes a protein with similarity to mammalian transcriptional coactivator that is involved in cell proliferation during leaf and flower development. Loss of function mutations have narrow, pointed leaves and narrow floral organs. AN3 interacts with members of the growth regulating factor (GRF) family of transcription factors.  go_component cellular_component|GO:0005575||ND  go_process cell proliferation|GO:0008283|15960617|IMP  go_process leaf development|GO:0048366|15326298|IMP  go_function transcription coactivator activity|GO:0003713|12974814|ISS  go_function protein binding|GO:0005515|15326298|IPI  go_function protein binding|GO:0005515|15960617|IPI  product AN3 (ANGUSTIFOLIA 3); protein binding / transcription coactivator  note ANGUSTIFOLIA 3 (AN3); FUNCTIONS IN: transcription coactivator activity, protein binding; INVOLVED IN: cell proliferation, leaf development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SSXT (InterPro:IPR007726); BEST Arabidopsis thaliana protein match is: GIF3 (GRF1-INTERACTING FACTOR 3); protein binding / transcription coactivator (TAIR:AT4G00850.1); Has 1609 Blast hits to 1442 proteins in 167 species: Archae - 0; Bacteria - 47; Metazoa - 946; Fungi - 139; Plants - 150; Viruses - 1; Other Eukaryotes - 326 (source: NCBI BLink).  protein_id AT5G28640.1p  transcript_id AT5G28640.1  protein_id AT5G28640.1p  transcript_id AT5G28640.1  
At5g28642	chr5:010654592	0.0	C/10654592-10654741	AT5G28642.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G28642.1p  transcript_id AT5G28642.1  protein_id AT5G28642.1p  transcript_id AT5G28642.1  
At5g28641	chr5:010662404	0.0	C/10662404-10666310	AT5G28641.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.3e-21 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At5g28643	chr5:010667519	0.0	C/10667519-10669676	AT5G28643.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, temporary automated functional assignment  
At5g28644	chr5:010670838	0.0	W/10670838-10672133	AT5G28644.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mariner-like transposase family, has a 4.4e-101 P-value blast match to GB:AAC28384 mariner transposase (Mariner_TC1-element) (Glycine max)  
At5g28646	chr5:010675192	0.0	W/10675192-10675353,10675433-10675570,10675666-10675737,10675810-10675920,10676026-10676151	AT5G28646.1  CDS  gene_syn WVD2  gene WVD2  function Encodes a novel protein. The wvd2 gain-of-function mutant has impaired cell expansion and root waving, and changed root skewing.  go_component cortical microtubule|GO:0055028|17319849|IDA  go_process microtubule cytoskeleton organization|GO:0000226|12586874|IMP  go_process microtubule bundle formation|GO:0001578|17319849|IMP  go_process establishment or maintenance of cell polarity|GO:0007163|12586874|IMP  go_process multidimensional cell growth|GO:0009825|12586874|IMP  go_process trichome branching|GO:0010091|17319849|IMP  go_function molecular_function|GO:0003674||ND  product WVD2  note WVD2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: trichome branching, microtubule bundle formation, multidimensional cell growth, establishment or maintenance of cell polarity, microtubule cytoskeleton organization; LOCATED IN: cortical microtubule; CONTAINS InterPro DOMAIN/s: Targeting for Xklp2 (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: WDL1 (TAIR:AT3G04630.1); Has 377 Blast hits to 366 proteins in 59 species: Archae - 0; Bacteria - 8; Metazoa - 38; Fungi - 7; Plants - 181; Viruses - 6; Other Eukaryotes - 137 (source: NCBI BLink).  protein_id AT5G28646.1p  transcript_id AT5G28646.1  protein_id AT5G28646.1p  transcript_id AT5G28646.1  
At5g28646	chr5:010675192	0.0	W/10675192-10675353,10675433-10675570,10675666-10675737,10675810-10675920,10676026-10676151	AT5G28646.2  CDS  gene_syn WVD2  gene WVD2  function Encodes a novel protein. The wvd2 gain-of-function mutant has impaired cell expansion and root waving, and changed root skewing.  go_component cortical microtubule|GO:0055028|17319849|IDA  go_process microtubule cytoskeleton organization|GO:0000226|12586874|IMP  go_process microtubule bundle formation|GO:0001578|17319849|IMP  go_process establishment or maintenance of cell polarity|GO:0007163|12586874|IMP  go_process multidimensional cell growth|GO:0009825|12586874|IMP  go_process trichome branching|GO:0010091|17319849|IMP  go_function molecular_function|GO:0003674||ND  product WVD2  note WVD2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: trichome branching, microtubule bundle formation, multidimensional cell growth, establishment or maintenance of cell polarity, microtubule cytoskeleton organization; LOCATED IN: cortical microtubule; CONTAINS InterPro DOMAIN/s: Targeting for Xklp2 (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: WDL1 (TAIR:AT3G04630.1).  protein_id AT5G28646.2p  transcript_id AT5G28646.2  protein_id AT5G28646.2p  transcript_id AT5G28646.2  
At5g28650	chr5:010678227	0.0	C/10678227-10678945,10678026-10678151,10677790-10677937	AT5G28650.1  CDS  gene_syn AtWRKY74, F4I4.30, F4I4_30, WRKY74  gene WRKY74  function member of WRKY Transcription Factor; Group II-d  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634|10785665|IC  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function calmodulin binding|GO:0005516|15733871|IDA  product WRKY74; calmodulin binding / transcription factor  note WRKY74; FUNCTIONS IN: transcription factor activity, calmodulin binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY, Zn-cluster (InterPro:IPR018872); BEST Arabidopsis thaliana protein match is: WRKY39; calmodulin binding / transcription factor (TAIR:AT3G04670.1); Has 1955 Blast hits to 1673 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1941; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT5G28650.1p  transcript_id AT5G28650.1  protein_id AT5G28650.1p  transcript_id AT5G28650.1  
At5g28655	chr5:010681550	0.0	C/10681550-10682057	AT5G28655.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g28660	chr5:010683218	0.0	W/10683218-10683464,10683551-10683691,10683790-10683926	AT5G28660.1  CDS  gene_syn F4I4.40, F4I4_40  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G47370.1); Has 39 Blast hits to 39 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G28660.1p  transcript_id AT5G28660.1  protein_id AT5G28660.1p  transcript_id AT5G28660.1  
At5g28662	chr5:010686173	0.0	W/10686173-10686823	AT5G28662.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g28664	chr5:010687264	0.0	C/10687264-10688628	AT5G28664.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to OSJNBa0029C04.8, blastp match of 44% identity and 1.9e-20 P-value to GP|21741659|emb|CAD39584.1||AL662943 OSJNBa0029C04.8 {Oryza sativa (japonica cultivar-group)}  
At5g28667	chr5:010690062	0.0	W/10690062-10691087	AT5G28667.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At5g28670	chr5:010691737	0.0	C/10691737-10695537	AT5G28670.1  mRNA_TE_gene  pseudo  gene_syn F4I4.50, F4I4_50  note Transposable element gene, pseudogene, similar to putative helicase, predicted helicase proteins, Arabidopsis thaliana; blastp match of 42% identity and 6.8e-154 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)}  
At5g28671	chr5:010698507	0.0	C/10698507-10699687	AT5G28671.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g28672	chr5:010700385	0.0	W/10700385-10701826	AT5G28672.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g28673	chr5:010706347	0.0	C/10706347-10708619	AT5G28673.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 2.1e-40 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays)  
At5g28675	chr5:010708694	0.0	W/10708694-10712681	AT5G28675.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 3.9e-257 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At5g28680	chr5:010719437	0.0	C/10719437-10722013	AT5G28680.1  CDS  gene_syn F4I4.60, F4I4_60  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G04690.1); Has 83801 Blast hits to 82785 proteins in 3152 species: Archae - 42; Bacteria - 7156; Metazoa - 37292; Fungi - 6406; Plants - 18562; Viruses - 392; Other Eukaryotes - 13951 (source: NCBI BLink).  protein_id AT5G28680.1p  transcript_id AT5G28680.1  protein_id AT5G28680.1p  transcript_id AT5G28680.1  
At5g28690	chr5:010723033	0.0	W/10723033-10723531,10723623-10723702	AT5G28690.1  CDS  gene_syn F4I4.70, F4I4_70  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04700.1); Has 95 Blast hits to 95 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G28690.1p  transcript_id AT5G28690.1  protein_id AT5G28690.1p  transcript_id AT5G28690.1  
At5g28692	chr5:010728378	0.0	C/10728378-10733393	AT5G28692.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.9e-66 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g28696	chr5:010738453	0.0	C/10738453-10744395	AT5G28696.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 8.2e-184 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g28698	chr5:010750394	0.0	W/10750394-10752193	AT5G28698.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 3.1e-28 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At5g28700	chr5:010755920	0.0	C/10755920-10757122	AT5G28700.1  mRNA_TE_gene  pseudo  gene_syn F4I4.80, F4I4_80  note Transposable element gene, pseudogene, similar to OSJNBa0026J14.30, various predicted proteins, Arabidopsis thaliana and others; blastp match of 57% identity and 1.2e-65 P-value to GP|20146463|dbj|BAB89243.1||AP004231 OSJNBa0026J14.30 {Oryza sativa (japonica cultivar-group)}  
At5g28710	chr5:010757991	0.0	C/10757991-10758887	AT5G28710.1  mRNA_TE_gene  pseudo  gene_syn F4I4.90, F4I4_90  note Transposable element gene, pseudogene, similar to A, contains similarity to hypothetical proteins; blastp match of 30% identity and 2.8e-08 P-value to GP|22830896|dbj|BAC15770.1||AB087616 A {Oryza sativa (japonica cultivar-group)}  
At5g28712	chr5:010760797	0.0	C/10760797-10762070	AT5G28712.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g28715	chr5:010765648	0.0	W/10765648-10770477	AT5G28715.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At5g28720	chr5:010776131	0.0	W/10776131-10776180,10776661-10776952	AT5G28720.1  CDS  gene_syn T32B20.10, T32B20_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G28720.1p  transcript_id AT5G28720.1  protein_id AT5G28720.1p  transcript_id AT5G28720.1  
At5g28730	chr5:010779003	0.0	W/10779003-10779045,10779127-10779488,10779563-10779838,10780009-10780218	AT5G28730.1  CDS  gene_syn T32B20.20, T32B20_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 409 Blast hits to 408 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 19; Plants - 390; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G28730.1p  transcript_id AT5G28730.1  protein_id AT5G28730.1p  transcript_id AT5G28730.1  
At5g28740	chr5:010780774	0.0	W/10780774-10782624,10782786-10783238,10783323-10783772	AT5G28740.1  CDS  gene_syn T32B20.1, T32B20_1  go_component intracellular|GO:0005622||IEA  go_process RNA processing|GO:0006396||IEA  go_function binding|GO:0005488||IEA  product transcription-coupled DNA repair protein-related  note transcription-coupled DNA repair protein-related; FUNCTIONS IN: binding; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: crooked neck protein, putative / cell cycle protein, putative (TAIR:AT5G45990.1); Has 2052 Blast hits to 1074 proteins in 171 species: Archae - 11; Bacteria - 14; Metazoa - 868; Fungi - 581; Plants - 257; Viruses - 0; Other Eukaryotes - 321 (source: NCBI BLink).  protein_id AT5G28740.1p  transcript_id AT5G28740.1  protein_id AT5G28740.1p  transcript_id AT5G28740.1  
At5g28750	chr5:010785369	0.0	C/10785369-10785677,10784142-10784276	AT5G28750.1  CDS  gene_syn T32B20.2, T32B20_2  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process protein secretion|GO:0009306||IEA  go_process protein transport|GO:0015031||IEA  go_function protein transporter activity|GO:0008565||IEA  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||IEA  go_process protein transport|GO:0015031||ISS  go_function protein transporter activity|GO:0008565||ISS  product thylakoid assembly protein, putative  note thylakoid assembly protein, putative; FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein secretion, protein transport; LOCATED IN: chloroplast thylakoid membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Twin-arginine translocation protein TatB (InterPro:IPR003998), Bacterial sec-independent translocation protein mttA/Hcf106 (InterPro:IPR003369), Twin-arginine translocation protein TatA/E (InterPro:IPR006312); BEST Arabidopsis thaliana protein match is: HCF106; proton motive force dependent protein transmembrane transporter (TAIR:AT5G52440.1); Has 1888 Blast hits to 1888 proteins in 601 species: Archae - 44; Bacteria - 1428; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 356 (source: NCBI BLink).  protein_id AT5G28750.1p  transcript_id AT5G28750.1  protein_id AT5G28750.1p  transcript_id AT5G28750.1  
At5g28760	chr5:010786308	0.0	W/10786308-10788949	AT5G28760.1  mRNA_TE_gene  pseudo  gene_syn T32B20.3, T32B20_3  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G27160.1); similar to ring-infested erythrocyte surface antigen [Plasmodium falciparum] (GB:AAF15366.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048)  
At5g28765	chr5:010791040	0.0	C/10791040-10793514	AT5G28765.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 1.9e-70 P-value blast match to O22278 /203-375 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At5g28770	chr5:010797881	0.0	C/10797881-10798147,10797551-10797620,10797336-10797447,10797196-10797271,10796988-10797113,10796648-10796920	AT5G28770.1  CDS  gene_syn Arabidopsis thaliana basic leucine zipper 63, AtbZIP63, BZO2H3, T32B20.4, T32B20_4  gene BZO2H3  function bZIP protein BZO2H3 mRNA, partial cds  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function protein heterodimerization activity|GO:0046982|16709202|IPI  product BZO2H3; DNA binding / protein heterodimerization/ transcription factor  note BZO2H3; FUNCTIONS IN: transcription factor activity, protein heterodimerization activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: BZIP25 (BASIC LEUCINE ZIPPER 25); protein heterodimerization/ transcription factor (TAIR:AT3G54620.1); Has 1790 Blast hits to 1770 proteins in 158 species: Archae - 0; Bacteria - 6; Metazoa - 205; Fungi - 103; Plants - 1394; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT5G28770.1p  transcript_id AT5G28770.1  protein_id AT5G28770.1p  transcript_id AT5G28770.1  
At5g28770	chr5:010797881	0.0	C/10797881-10798147,10797551-10797641,10797336-10797447,10797196-10797271,10796907-10797113	AT5G28770.3  CDS  gene_syn Arabidopsis thaliana basic leucine zipper 63, AtbZIP63, BZO2H3, T32B20.4, T32B20_4  gene BZO2H3  function bZIP protein BZO2H3 mRNA, partial cds  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function protein heterodimerization activity|GO:0046982|16709202|IPI  product BZO2H3; DNA binding / protein heterodimerization/ transcription factor  note BZO2H3; FUNCTIONS IN: transcription factor activity, protein heterodimerization activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: BZIP25 (BASIC LEUCINE ZIPPER 25); protein heterodimerization/ transcription factor (TAIR:AT3G54620.1); Has 1670 Blast hits to 1670 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 184; Fungi - 63; Plants - 1377; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT5G28770.3p  transcript_id AT5G28770.3  protein_id AT5G28770.3p  transcript_id AT5G28770.3  
At5g28770	chr5:010797881	0.0	C/10797881-10798147,10797551-10797641,10797336-10797447,10797196-10797271,10796988-10797113,10796648-10796920	AT5G28770.2  CDS  gene_syn Arabidopsis thaliana basic leucine zipper 63, AtbZIP63, BZO2H3, T32B20.4, T32B20_4  gene BZO2H3  function bZIP protein BZO2H3 mRNA, partial cds  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function protein heterodimerization activity|GO:0046982|16709202|IPI  product BZO2H3; DNA binding / protein heterodimerization/ transcription factor  note BZO2H3; FUNCTIONS IN: transcription factor activity, protein heterodimerization activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: BZIP25 (BASIC LEUCINE ZIPPER 25); protein heterodimerization/ transcription factor (TAIR:AT3G54620.1); Has 1761 Blast hits to 1753 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 203; Fungi - 98; Plants - 1390; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT5G28770.2p  transcript_id AT5G28770.2  protein_id AT5G28770.2p  transcript_id AT5G28770.2  
At5g28773	chr5:010802036	0.0	C/10802036-10802887	AT5G28773.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to Putative retroelement, similar to putative reverse transcriptase; blastp match of 25% identity and 1.6e-07 P-value to GP|20087075|gb|AAM10748.1|AC112514_1|AC112514 Putative retroelement {Oryza sativa}  
At5g28776	chr5:010808702	0.0	W/10808702-10812733	AT5G28776.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 4.6e-199 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At5g28780	chr5:010814063	0.0	C/10814063-10814173,10813913-10813986,10812995-10813812,10812907-10812917	AT5G28780.1  CDS  gene_syn T32B20.70, T32B20_70  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF889, eukaryote (InterPro:IPR010285); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51690.1); Has 752 Blast hits to 747 proteins in 167 species: Archae - 0; Bacteria - 152; Metazoa - 132; Fungi - 76; Plants - 161; Viruses - 6; Other Eukaryotes - 225 (source: NCBI BLink).  protein_id AT5G28780.1p  transcript_id AT5G28780.1  protein_id AT5G28780.1p  transcript_id AT5G28780.1  
At5g28781	chr5:010814693	0.0	W/10814693-10814824	AT5G28781.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G28781.1p  transcript_id AT5G28781.1  protein_id AT5G28781.1p  transcript_id AT5G28781.1  
At5g28785	chr5:010817194	0.0	W/10817194-10818477	AT5G28785.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14630.1)  
At5g28790	chr5:010820173	0.0	W/10820173-10820525	AT5G28790.1  mRNA_TE_gene  pseudo  gene_syn T32B20.80, T32B20_80  note Transposable element gene  
At5g28800	chr5:010822880	0.0	W/10822880-10822963,10823366-10823638	AT5G28800.1  CDS  gene_syn T32B20.90, T32B20_90  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G28800.1p  transcript_id AT5G28800.1  protein_id AT5G28800.1p  transcript_id AT5G28800.1  
At5g28810	chr5:010824433	0.0	W/10824433-10824614,10824722-10824798,10824868-10825289,10825394-10825675,10825761-10826030,10826126-10826575	AT5G28810.1  CDS  gene_syn T32B20.100, T32B20_100  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1985 (InterPro:IPR015410); BEST Arabidopsis thaliana protein match is: Ulp1 protease family protein (TAIR:AT5G45570.1); Has 349 Blast hits to 329 proteins in 63 species: Archae - 2; Bacteria - 41; Metazoa - 100; Fungi - 9; Plants - 76; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).  protein_id AT5G28810.1p  transcript_id AT5G28810.1  protein_id AT5G28810.1p  transcript_id AT5G28810.1  
At5g28820	chr5:010831799	0.0	W/10831799-10831924,10832055-10832255,10832341-10832532	AT5G28820.1  CDS  gene_syn T32B20.110, T32B20_110  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, cauline leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 16 Blast hits to 16 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G28820.1p  transcript_id AT5G28820.1  protein_id AT5G28820.1p  transcript_id AT5G28820.1  
At5g28821	chr5:010832919	0.0	W/10832919-10833026	AT5G28821.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G28821.1p  transcript_id AT5G28821.1  protein_id AT5G28821.1p  transcript_id AT5G28821.1  
At5g28823	chr5:010839161	0.0	C/10839161-10839826,10838601-10838940,10837849-10838549	AT5G28823.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: zinc knuckle (CCHC-type) family protein (TAIR:AT2G07760.1); Has 99 Blast hits to 71 proteins in 22 species: Archae - 0; Bacteria - 18; Metazoa - 2; Fungi - 56; Plants - 20; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G28823.1p  transcript_id AT5G28823.1  protein_id AT5G28823.1p  transcript_id AT5G28823.1  
At5g28824	chr5:010842660	0.0	C/10842660-10845756	AT5G28824.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G28824.1  
At5g28826	chr5:010846899	0.0	W/10846899-10853413	AT5G28826.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 2.9e-218 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At5g28830	chr5:010856801	0.0	W/10856801-10857092,10857244-10857438,10857819-10858000,10858089-10858394	AT5G28830.1  CDS  gene_syn F7P1.10, F7P1_10  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT4G38810.2); Has 159 Blast hits to 131 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT5G28830.1p  transcript_id AT5G28830.1  protein_id AT5G28830.1p  transcript_id AT5G28830.1  
At5g28840	chr5:010863615	0.0	C/10863615-10864024,10863432-10863528,10863225-10863354,10863006-10863138,10862720-10862927,10862472-10862627	AT5G28840.1  CDS  gene_syn F7P1.20, F7P1_20, GDP-D-MANNOSE 3 ,5 -EPIMERASE, GME  gene GME  function Encodes a protein with GDP-D-mannose 3 ,5 -epimerase activity. The enzyme is involved in ascorbate biosynthesis. It catalyzes the conversion of GDP-D-mannose to GDP-L-galactose.  go_component cellular_component|GO:0005575||ND  go_process nucleotide-sugar metabolic process|GO:0009225||ISS  go_process L-ascorbic acid biosynthetic process|GO:0019853|12954627|TAS  go_function catalytic activity|GO:0003824||ISS  go_function GDP-mannose 3,5-epimerase activity|GO:0047918|11752432|IDA  go_function GDP-mannose 3,5-epimerase activity|GO:0047918|11752432|ISS  go_function NAD or NADH binding|GO:0051287|12954627|TAS  product GME (GDP-D-MANNOSE 3 ,5 -EPIMERASE); GDP-mannose 3,5-epimerase/ NAD or NADH binding / catalytic  note GDP-D-MANNOSE 3 ,5 -EPIMERASE (GME); FUNCTIONS IN: NAD or NADH binding, GDP-mannose 3,5-epimerase activity, catalytic activity; INVOLVED IN: L-ascorbic acid biosynthetic process, nucleotide-sugar metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: AUD1; UDP-glucuronate decarboxylase/ catalytic/ dTDP-glucose 4,6-dehydratase (TAIR:AT3G62830.2); Has 21276 Blast hits to 21276 proteins in 1597 species: Archae - 403; Bacteria - 9778; Metazoa - 301; Fungi - 129; Plants - 570; Viruses - 15; Other Eukaryotes - 10080 (source: NCBI BLink).  protein_id AT5G28840.1p  transcript_id AT5G28840.1  protein_id AT5G28840.1p  transcript_id AT5G28840.1  
At5g28845	chr5:010869579	0.0	W/10869579-10872681	AT5G28845.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 7.0e-184 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At5g28850	chr5:010879269	0.0	C/10879269-10879416,10878582-10878723,10878343-10878490,10878100-10878209,10877859-10878015,10877590-10877715,10877360-10877503	AT5G28850.1  CDS  gene_syn F7P1.30, F7P1_30  go_component endomembrane system|GO:0012505||IEA  go_function calcium ion binding|GO:0005509||IEA  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT5G28900.1); Has 503 Blast hits to 503 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 277; Fungi - 2; Plants - 65; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT5G28850.1p  transcript_id AT5G28850.1  protein_id AT5G28850.1p  transcript_id AT5G28850.1  
At5g28850	chr5:010881126	0.0	C/10881126-10881278,10880048-10880275,10879852-10879957,10879670-10879769,10879451-10879556,10879269-10879359,10878582-10878723,10878343-10878490,10878100-10878209,10877859-10878015,10877590-10877715,10877360-10877503	AT5G28850.2  CDS  gene_syn F7P1.30, F7P1_30  go_function calcium ion binding|GO:0005509||IEA  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT5G28900.1); Has 516 Blast hits to 516 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 281; Fungi - 2; Plants - 68; Viruses - 0; Other Eukaryotes - 165 (source: NCBI BLink).  protein_id AT5G28850.2p  transcript_id AT5G28850.2  protein_id AT5G28850.2p  transcript_id AT5G28850.2  
At5g28860	chr5:010883452	0.0	C/10883452-10884283	AT5G28860.1  mRNA_TE_gene  pseudo  gene_syn F7P1.40, F7P1_40  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G01031.1)  
At5g28865	chr5:010884483	0.0	W/10884483-10889210	AT5G28865.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 7.1e-80 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At5g28870	chr5:010889278	0.0	C/10889278-10891421	AT5G28870.1  mRNA_TE_gene  pseudo  gene_syn F7P1.50, F7P1_50  note Transposable element gene, pseudogene, hypothetical protein  
At5g28880	chr5:010894098	0.0	C/10894098-10894704	AT5G28880.1  mRNA_TE_gene  pseudo  gene_syn F7P1.60, F7P1_60  note Transposable element gene, pseudogene, hypothetical protein  
At5g28885	chr5:010896741	0.0	W/10896741-10897026,10897115-10897211,10897290-10897316,10897635-10897767,10898169-10898180	AT5G28885.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G28885.1p  transcript_id AT5G28885.1  protein_id AT5G28885.1p  transcript_id AT5G28885.1  
At5g28886	chr5:010900009	0.0	C/10900009-10900385	AT5G28886.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g28888	chr5:010902105	0.0	C/10902105-10903015	AT5G28888.1  mRNA_TE_gene  pseudo  function pseudogene similar to terpenoid cyclase/protein prenyltransferase alpha-alpha toroid  note Transposable element gene, pseudogene, expressed protein  
At5g28890	chr5:010904102	0.0	C/10904102-10904800	AT5G28890.1  mRNA_TE_gene  pseudo  gene_syn F7P1.70, F7P1_70  note Transposable element gene, similar to DNA binding [Arabidopsis thaliana] (TAIR:AT4G01980.1); similar to hypothetical protein 24.t00018 [Brassica oleracea] (GB:ABD64940.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)  
At5g28892	chr5:010905938	0.0	W/10905938-10911761	AT5G28892.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to putative helicase, blastp match of 40% identity and 7.3e-142 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)}  
At5g28894	chr5:010913551	0.0	C/10913551-10914393	AT5G28894.2  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.8e-23 P-value blast match to GB:AAD12998 pol polyprotein (Ty1_Copia-element) (Zea mays)  
At5g28897	chr5:010923209	0.0	W/10923209-10923688	AT5G28897.1  pseudogenic_transcript  pseudo  note pseudogene, gamma tonoplast intrinsic protein, similar to gamma tonoplast intrinsic protein; blastp match of 73% identity and 1.7e-29 P-value to GP|5081419|gb|AAD39372.1|AF118381_1|AF118381 tonoplast intrinsic protein {Brassica napus}  
At5g28900	chr5:010925852	0.0	W/10925852-10926004,10926751-10926978,10927069-10927174,10927257-10927356,10927472-10927577,10927664-10927754,10928549-10928690,10928782-10928929,10929059-10929168,10929252-10929408,10929541-10929666,10929749-10929892	AT5G28900.1  CDS  gene_syn F7P1.80, F7P1_80  go_function calcium ion binding|GO:0005509||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, cytoplasm; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT5G28850.2); Has 513 Blast hits to 513 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 281; Fungi - 2; Plants - 68; Viruses - 0; Other Eukaryotes - 162 (source: NCBI BLink).  protein_id AT5G28900.1p  transcript_id AT5G28900.1  protein_id AT5G28900.1p  transcript_id AT5G28900.1  
At5g28910	chr5:010932015	0.0	C/10932015-10932112,10931687-10931931,10930633-10931516	AT5G28910.1  CDS  gene_syn F7P1.2  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28960.1); Has 19 Blast hits to 19 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G28910.1p  transcript_id AT5G28910.1  protein_id AT5G28910.1p  transcript_id AT5G28910.1  
At5g28910	chr5:010932350	0.0	C/10932350-10932575,10932015-10932262,10931687-10931936,10930633-10931516	AT5G28910.2  CDS  gene_syn F7P1.2  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28960.1); Has 19 Blast hits to 19 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G28910.2p  transcript_id AT5G28910.2  protein_id AT5G28910.2p  transcript_id AT5G28910.2  
At5g28913	chr5:010933823	0.0	C/10933823-10934730	AT5G28913.1  mRNA_TE_gene  pseudo  gene_syn SADHU NON-CODING RETROTRANSPOSON, SADHU4-1  gene SADHU4-1  function Member of Sadhu non-coding retrotransposon family  note Transposable element gene  
At5g28916	chr5:010935725	0.0	C/10935725-10936232	AT5G28916.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 6.7e-16 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At5g28917	chr5:010936832	0.0	C/10936832-10938217	AT5G28917.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G40087  
At5g28919	chr5:010940584	0.0	W/10940584-10941150	AT5G28919.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: Expressed protein (TAIR:AT3G01345.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G28919.1p  transcript_id AT5G28919.1  protein_id AT5G28919.1p  transcript_id AT5G28919.1  
At5g28920	chr5:010943238	0.0	C/10943238-10943378,10942901-10943137,10942796-10942816,10942357-10942610,10942168-10942254,10941959-10942090,10941505-10941624,10940625-10940892	AT5G28920.1  CDS  gene_syn F7P1.1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G28920.1p  transcript_id AT5G28920.1  protein_id AT5G28920.1p  transcript_id AT5G28920.1  
At5g28923	chr5:010946562	0.0	C/10946562-10948829	AT5G28923.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 3.2e-39 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At5g28926	chr5:010949704	0.0	C/10949704-10953591	AT5G28926.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 2.3e-152 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At5g28927	chr5:010959091	0.0	C/10959091-10961379	AT5G28927.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 3.9e-45 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays)  
At5g28931	chr5:010961626	0.0	C/10961626-10961781	AT5G28931.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G28931.1p  transcript_id AT5G28931.1  protein_id AT5G28931.1p  transcript_id AT5G28931.1  
At5g28928	chr5:010962068	0.0	C/10962068-10963114	AT5G28928.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g28929	chr5:010966526	0.0	C/10966526-10967632	AT5G28929.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 1.2e-47 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At5g28930	chr5:010968247	0.0	W/10968247-10972487	AT5G28930.1  mRNA_TE_gene  pseudo  gene_syn F3F24.30, F3F24_30  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G07240.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At5g28935	chr5:010974472	0.0	C/10974472-10979625	AT5G28935.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 1.0e-48 P-value blast match to Q9SHN7 /450-633 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At5g28937	chr5:010981814	0.0	C/10981814-10984144	AT5G28937.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g28940	chr5:010985288	0.0	C/10985288-10987600	AT5G28940.1  mRNA_TE_gene  pseudo  gene_syn F3F24.40, F3F24_40  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G07630.1); similar to hypothetical protein 31.t00031 [Brassica oleracea] (GB:ABD65118.1); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At5g28950	chr5:010992505	0.0	W/10992505-10992573,10992647-10992875,10993287-10993435	AT5G28950.1  CDS  gene_syn F3F24.50, F3F24_50  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 412 Blast hits to 409 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 15; Plants - 381; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G28950.1p  transcript_id AT5G28950.1  protein_id AT5G28950.1p  transcript_id AT5G28950.1  
At5g28960	chr5:010996591	0.0	W/10996591-10996813,10996891-10997141,10997212-10997461,10997897-10998783	AT5G28960.1  CDS  gene_syn F3F24.60, F3F24_60  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28910.2); Has 18 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G28960.1p  transcript_id AT5G28960.1  protein_id AT5G28960.1p  transcript_id AT5G28960.1  
At5g28970	chr5:011002030	0.0	W/11002030-11009297	AT5G28970.1  mRNA_TE_gene  pseudo  gene_syn F3F24.70, F3F24_70  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G35110.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G19320.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G36020.1); similar to Agenet domain containing protein [Brassica oleracea] (GB:ABD65016.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At5g28980	chr5:011009929	0.0	W/11009929-11012192	AT5G28980.1  mRNA_TE_gene  pseudo  gene_syn F3F24.80, F3F24_80  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35090.1); similar to hypothetical protein 31.t00082 [Brassica oleracea] (GB:ABD65101.1); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At5g28990	chr5:011012867	0.0	W/11012867-11013508	AT5G28990.1  mRNA_TE_gene  pseudo  gene_syn F3F24.90, F3F24_90  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G03979.1)  
At5g28993	chr5:011014537	0.0	C/11014537-11017239	AT5G28993.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 4.2e-57 P-value blast match to Q9S9L6 /322-461 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At5g28996	chr5:011020537	0.0	C/11020537-11020788	AT5G28996.1  pseudogenic_transcript  pseudo  note pseudogene, similar to ATP-dependent phosphoenolpyruvate carboxykinase, blastp match of 83% identity and 1.2e-13 P-value to GP|6707571|gb|AAF25671.1|AF212109_1|AF212109 ATP-dependent phosphoenolpyruvate carboxykinase {Medicago sativa}  
At5g29000	chr5:011023660	0.0	C/11023660-11024100,11023378-11023573,11023212-11023288,11023060-11023105,11022864-11022924,11022680-11022749,11022336-11022557	AT5G29000.1  CDS  gene_syn F3F24.100, F3F24_100  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT3G04450.1); Has 940 Blast hits to 933 proteins in 57 species: Archae - 0; Bacteria - 6; Metazoa - 9; Fungi - 9; Plants - 898; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT5G29000.1p  transcript_id AT5G29000.1  protein_id AT5G29000.1p  transcript_id AT5G29000.1  
At5g29000	chr5:011023660	0.0	C/11023660-11024100,11023378-11023573,11023212-11023288,11023060-11023105,11022864-11022924,11022680-11022749,11022336-11022557	AT5G29000.3  CDS  gene_syn F3F24.100, F3F24_100  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT3G04450.1); Has 940 Blast hits to 933 proteins in 57 species: Archae - 0; Bacteria - 6; Metazoa - 9; Fungi - 9; Plants - 898; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT5G29000.3p  transcript_id AT5G29000.3  protein_id AT5G29000.3p  transcript_id AT5G29000.3  
At5g29000	chr5:011023660	0.0	C/11023660-11024229,11023378-11023573,11023212-11023288,11023013-11023105	AT5G29000.4  CDS  gene_syn F3F24.100, F3F24_100  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT3G04450.1); Has 886 Blast hits to 884 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 876; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G29000.4p  transcript_id AT5G29000.4  protein_id AT5G29000.4p  transcript_id AT5G29000.4  
At5g29000	chr5:011023660	0.0	C/11023660-11024229,11023378-11023573,11023212-11023288,11023060-11023105,11022864-11022924,11022680-11022749,11022336-11022557	AT5G29000.2  CDS  gene_syn F3F24.100, F3F24_100  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT3G04450.1); Has 940 Blast hits to 933 proteins in 57 species: Archae - 0; Bacteria - 6; Metazoa - 9; Fungi - 9; Plants - 898; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT5G29000.2p  transcript_id AT5G29000.2  protein_id AT5G29000.2p  transcript_id AT5G29000.2  
At5g29015	chr5:011031699	0.0	W/11031699-11038817	AT5G29015.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 1.3e-121 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays)  
At5g29020	chr5:011041951	0.0	W/11041951-11046502	AT5G29020.1  mRNA_TE_gene  pseudo  gene_syn F3F24.120, F3F24_120  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G60930.1); similar to hypothetical protein TTHERM_00155290 [Tetrahymena thermophila SB210] (GB:XP_001009657.1)  
At5g29022	chr5:011047199	0.0	C/11047199-11050909	AT5G29022.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 8.2e-160 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At5g29024	chr5:011054697	0.0	C/11054697-11056812	AT5G29024.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 7.1e-05 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At5g29026	chr5:011057786	0.0	W/11057786-11059041	AT5G29026.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 3.2e-83 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At5g29028	chr5:011060647	0.0	W/11060647-11062141	AT5G29028.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 3.4e-48 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At5g29029	chr5:011062524	0.0	C/11062524-11063981	AT5G29029.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to Putative copia-type polyprotein, blastp match of 46% identity and 3.0e-30 P-value to GP|15209144|gb|AAK91877.1|AC091665_3|AC091665 Putative copia-type polyprotein {Oryza sativa}  
At5g29031	chr5:011066526	0.0	C/11066526-11066990	AT5G29031.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g29030	chr5:011068258	0.0	W/11068258-11072505	AT5G29030.1  pseudogenic_transcript  pseudo  gene_syn F3F24.130, F3F24_130  note pseudogene, hypothetical protein  
At5g29033	chr5:011073589	0.0	W/11073589-11074017	AT5G29033.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.5e-58 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g29035	chr5:011076230	0.0	C/11076230-11078077	AT5G29035.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.9e-27 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g29036	chr5:011078396	0.0	W/11078396-11079007	AT5G29036.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g29032	chr5:011080139	0.0	W/11080139-11083743	AT5G29032.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.1e-191 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g29034	chr5:011085571	0.0	W/11085571-11086257	AT5G29034.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g29037	chr5:011087124	0.0	W/11087124-11092700	AT5G29037.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 2.2e-209 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At5g29040	chr5:011094905	0.0	C/11094905-11098337	AT5G29040.1  pseudogenic_transcript  pseudo  gene_syn F23C8.10, F23C8_10  note pseudogene, hypothetical protein  
At5g29041	chr5:011100205	0.0	C/11100205-11101377	AT5G29041.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.8e-43 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g29043	chr5:011102695	0.0	W/11102695-11106649	AT5G29043.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.9e-176 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g29044	chr5:011107381	0.0	W/11107381-11107512	AT5G29044.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G29044.1p  transcript_id AT5G29044.1  protein_id AT5G29044.1p  transcript_id AT5G29044.1  
At5g29046	chr5:011107776	0.0	W/11107776-11109629	AT5G29046.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g29050	chr5:011111692	0.0	W/11111692-11111737,11111841-11112283	AT5G29050.1  CDS  gene_syn F23C8.20, F23C8_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G11015.1); Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G29050.1p  transcript_id AT5G29050.1  protein_id AT5G29050.1p  transcript_id AT5G29050.1  
At5g29053	chr5:011112540	0.0	C/11112540-11116875	AT5G29053.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 2.0e-179 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At5g29054	chr5:011116913	0.0	C/11116913-11117014	AT5G29054.1  CDS  product unknown protein  note unknown protein; Has 2 Blast hits to 2 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G29054.1p  transcript_id AT5G29054.1  protein_id AT5G29054.1p  transcript_id AT5G29054.1  
At5g29056	chr5:011117609	0.0	W/11117609-11121412	AT5G29056.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 5.6e-136 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At5g29058	chr5:011122321	0.0	W/11122321-11122830	AT5G29058.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g29060	chr5:011128470	0.0	C/11128470-11129537	AT5G29060.2  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g29070	chr5:011133282	0.0	C/11133282-11133516,11133099-11133195,11132884-11133000,11132627-11132824,11132528-11132585,11132175-11132393	AT5G29070.1  CDS  gene_syn F23C8.40, F23C8_40  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: nucleic acid binding / zinc ion binding (TAIR:AT4G06479.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G29070.1p  transcript_id AT5G29070.1  protein_id AT5G29070.1p  transcript_id AT5G29070.1  
At5g29075	chr5:011136149	0.0	C/11136149-11146651	AT5G29075.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 2.4e-317 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At5g29090	chr5:011149622	0.0	W/11149622-11150540	AT5G29090.1  mRNA_TE_gene  pseudo  gene_syn F23C8.60, F23C8_60  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G33131.1)  
At5g29100	chr5:011150677	0.0	C/11150677-11152845	AT5G29100.1  mRNA_TE_gene  pseudo  gene_syn F23C8.70, F23C8_70  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.2e-12 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g29210	chr5:011153466	0.0	C/11153466-11153945	AT5G29210.1  CDS  gene_syn F23C8.80, F23C8_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G29210.1p  transcript_id AT5G29210.1  protein_id AT5G29210.1p  transcript_id AT5G29210.1  
At5g29231	chr5:011155094	0.0	C/11155094-11155210	AT5G29231.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G29231.1p  transcript_id AT5G29231.1  protein_id AT5G29231.1p  transcript_id AT5G29231.1  
At5g29295	chr5:011158407	0.0	C/11158407-11159420	AT5G29295.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 8.5e-29 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays)  
At5g29337	chr5:011161135	0.0	W/11161135-11163918	AT5G29337.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.7e-77 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g29380	chr5:011166005	0.0	C/11166005-11170339	AT5G29380.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 2.2e-111 P-value blast match to F23C08 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)  
At5g29408	chr5:011171500	0.0	C/11171500-11174052	AT5G29408.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 7.8e-116 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At5g29436	chr5:011175677	0.0	C/11175677-11176666	AT5G29436.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 5.4e-30 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g29465	chr5:011178377	0.0	C/11178377-11181391	AT5G29465.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.3e-296 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g29550	chr5:011182706	0.0	C/11182706-11184514	AT5G29550.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 7.4e-126 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g29560	chr5:011191852	0.0	C/11191852-11191963,11191345-11191494,11191171-11191256,11190973-11191067,11190826-11190894,11190543-11190693	AT5G29560.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium ion binding  note calcium ion binding; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: caleosin-related family protein / embryo-specific protein, putative (TAIR:AT5G55240.1); Has 230 Blast hits to 225 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 46; Plants - 182; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G29560.1p  transcript_id AT5G29560.1  protein_id AT5G29560.1p  transcript_id AT5G29560.1  
At5g29562	chr5:011197050	0.0	W/11197050-11201681	AT5G29562.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.8e-228 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At5g29565	chr5:011206792	0.0	W/11206792-11210598	AT5G29565.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.5e-98 P-value blast match to gb|AAL06419.1|AF378075_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At5g29568	chr5:011212606	0.0	W/11212606-11213608	AT5G29568.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 1.1e-19 P-value blast match to At1g15560.1/58-302 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At5g29571	chr5:011215094	0.0	W/11215094-11217830	AT5G29571.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.2e-285 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g29574	chr5:011218048	0.0	W/11218048-11223147	AT5G29574.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 2.5e-131 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At5g29577	chr5:011227044	0.0	C/11227044-11227495	AT5G29577.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 2.9e-17 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At5g29580	chr5:011268325	0.0	C/11268325-11271810	AT5G29580.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 1.4e-130 P-value blast match to GB:AAA66266 unknown protein ORF1 transposable element En-1 (CACTA-element) (Zea mays)  
At5g29591	chr5:011272316	0.0	W/11272316-11273629	AT5G29591.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 1.4e-14 P-value blast match to Q9XE24 /118-277 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At5g29602	chr5:011273908	0.0	C/11273908-11274447	AT5G29602.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G07090.1)  
At5g29613	chr5:011280577	0.0	W/11280577-11280680,11280861-11281110	AT5G29613.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 11 Blast hits to 11 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G29613.1p  transcript_id AT5G29613.1  protein_id AT5G29613.1p  transcript_id AT5G29613.1  
At5g29624	chr5:011285138	0.0	W/11285138-11286604	AT5G29624.1  CDS  go_component intracellular|GO:0005622||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_function zinc ion binding|GO:0008270||IEA  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling cascade; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Zinc finger, C2H2-like (InterPro:IPR015880), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT5G54050.1); Has 830 Blast hits to 458 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 21; Fungi - 1; Plants - 804; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G29624.1p  transcript_id AT5G29624.1  protein_id AT5G29624.1p  transcript_id AT5G29624.1  
At5g29629	chr5:011287947	0.0	W/11287947-11288518	AT5G29629.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At5g29635	chr5:011291092	0.0	W/11291092-11292716	AT5G29635.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 7.7e-111 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At5g29720	chr5:011294565	0.0	W/11294565-11300009	AT5G29720.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.7e-94 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At5g29762	chr5:011302070	0.0	W/11302070-11303892	AT5G29762.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g29805	chr5:011305984	0.0	W/11305984-11306557	AT5G29805.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.5e-33 P-value blast match to gb|AAL06419.1|AF378075_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At5g29807	chr5:011306898	0.0	C/11306898-11307152	AT5G29807.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G29807.1p  transcript_id AT5G29807.1  protein_id AT5G29807.1p  transcript_id AT5G29807.1  
At5g29890	chr5:011316709	0.0	W/11316709-11318967	AT5G29890.2  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 5.2e-21 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At5g29975	chr5:011323981	0.0	C/11323981-11329884	AT5G29975.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.4e-306 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g30060	chr5:011335386	0.0	W/11335386-11339141	AT5G30060.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.9e-154 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g30102	chr5:011340043	0.0	C/11340043-11344833	AT5G30102.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 7.3e-270 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At5g30123	chr5:011345399	0.0	W/11345399-11346278	AT5G30123.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g30189	chr5:011347262	0.0	C/11347262-11352028	AT5G30189.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 4.4e-179 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At5g30218	chr5:011352700	0.0	W/11352700-11354221	AT5G30218.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.3e-30 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g30247	chr5:011356354	0.0	W/11356354-11357072	AT5G30247.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.3e-45 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g30276	chr5:011358801	0.0	C/11358801-11364836	AT5G30276.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.0e-99 P-value blast match to gb|AAL06419.1|AF378075_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At5g30341	chr5:011365987	0.0	W/11365987-11366088,11366119-11366271,11366344-11366433,11366525-11366641	AT5G30341.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G30341.1p  transcript_id AT5G30341.1  protein_id AT5G30341.1p  transcript_id AT5G30341.1  
At5g30406	chr5:011368303	0.0	C/11368303-11372538	AT5G30406.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 8.8e-131 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g30428	chr5:011374055	0.0	W/11374055-11374642	AT5G30428.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.9e-06 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g30495	chr5:011380190	0.0	W/11380190-11380422,11380505-11380565,11380644-11380721,11380822-11380934,11381286-11381391	AT5G30495.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Fcf2 pre-rRNA processing (InterPro:IPR014810); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54770.1); Has 218 Blast hits to 218 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 88; Fungi - 76; Plants - 26; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT5G30495.1p  transcript_id AT5G30495.1  protein_id AT5G30495.1p  transcript_id AT5G30495.1  
At5g30495	chr5:011380190	0.0	W/11380190-11380422,11380505-11380565,11380644-11380721,11380822-11380934,11381286-11381391	AT5G30495.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Fcf2 pre-rRNA processing (InterPro:IPR014810); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54770.1); Has 218 Blast hits to 218 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 88; Fungi - 76; Plants - 26; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT5G30495.2p  transcript_id AT5G30495.2  protein_id AT5G30495.2p  transcript_id AT5G30495.2  
At5g30584	chr5:011388164	0.0	W/11388164-11395249	AT5G30584.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.1e-15 P-value blast match to GB:CAA28054 ORF (Ty1_Copia-element) (Drosophila melanogaster)  
At5g30628	chr5:011396275	0.0	W/11396275-11396867	AT5G30628.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g30673	chr5:011398079	0.0	W/11398079-11400784	AT5G30673.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 5.0e-275 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g30762	chr5:011402278	0.0	W/11402278-11403675	AT5G30762.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g30852	chr5:011405397	0.0	W/11405397-11406710	AT5G30852.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to contains similarity to Arabidopsis thaliana hypothetical protein (GB:AC004483)  
At5g30942	chr5:011406968	0.0	C/11406968-11412536	AT5G30942.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 4.3e-162 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At5g31032	chr5:011412727	0.0	W/11412727-11415675	AT5G31032.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.4e-35 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)  
At5g31122	chr5:011417342	0.0	W/11417342-11418304	AT5G31122.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to Putative copia-type polyprotein, blastp match of 56% identity and 1.5e-39 P-value to GP|15209144|gb|AAK91877.1|AC091665_3|AC091665 Putative copia-type polyprotein {Oryza sativa}  
At5g31212	chr5:011418567	0.0	W/11418567-11421081	AT5G31212.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 4.1e-46 P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element)  
At5g31302	chr5:011421208	0.0	W/11421208-11423580	AT5G31302.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to contains similarity to Arabidopsis thaliana hypothetical protein (GB:AC004483)  
At5g31572	chr5:011424677	0.0	W/11424677-11426539	AT5G31572.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to putative Athila retroelement ORF1 protein  
At5g31662	chr5:011428290	0.0	W/11428290-11433594	AT5G31662.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 6.6e-143 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays)  
At5g31752	chr5:011434337	0.0	C/11434337-11436213	AT5G31752.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G34590.1)  
At5g31842	chr5:011437644	0.0	W/11437644-11438267	AT5G31842.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to contains similarity to Arabidopsis thaliana hypothetical protein (GB:AC004483)  
At5g31932	chr5:011439255	0.0	W/11439255-11439476	AT5G31932.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 5.4e-11 P-value blast match to GB:BAA11674 ORF(AA 1-1338) (Ty1_Copia-element) (Nicotiana tabacum)  
At5g32022	chr5:011440713	0.0	W/11440713-11441132	AT5G32022.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.9e-06 P-value blast match to GB:AAD12998 pol polyprotein (Ty1_Copia-element) (Zea mays)  
At5g32112	chr5:011441810	0.0	W/11441810-11442856	AT5G32112.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, replication protein A1 -related, similar to putative replication protein A1  
At5g30380	chr5:011443004	0.0	W/11443004-11444180	AT5G30380.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, predicted proteins - Arabidopsis thaliana  
At5g32037	chr5:011446319	0.0	W/11446319-11447530	AT5G32037.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, helicase -related, similar to putative helicase; blastp match of 44% identity and 2.7e-53 P-value to GP|14140286|gb|AAK54292.1|AC034258_10|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)}  
At5g32070	chr5:011447667	0.0	W/11447667-11449552	AT5G32070.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to AT hook motif-containing protein-related [Arabidopsis thaliana] (TAIR:AT3G42100.1); similar to hypothetical protein 31.t00030 [Brassica oleracea] (GB:ABD65117.1); contains InterPro domain Protein of unknown function DUF889, eukaryote; (InterPro:IPR010285)  
At5g32072	chr5:011450044	0.0	C/11450044-11450532	AT5G32072.1  pseudogenic_transcript  pseudo  function pseudogene of Glucose-6-phosphate isomerase  
At5g32103	chr5:011453775	0.0	W/11453775-11457685	AT5G32103.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 1.3e-140 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays)  
At5g32136	chr5:011457959	0.0	W/11457959-11459621	AT5G32136.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 1.2e-29 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At5g32169	chr5:011460441	0.0	W/11460441-11461217	AT5G32169.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32405.1)  
At5g30390	chr5:011462112	0.0	W/11462112-11463413	AT5G30390.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp1/En/Spm), has a 1.3e-10 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)  
At5g31845	chr5:011464465	0.0	C/11464465-11468772	AT5G31845.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 7.1e-232 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g31884	chr5:011468969	0.0	W/11468969-11469478	AT5G31884.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.8e-09 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g31923	chr5:011469617	0.0	W/11469617-11470030	AT5G31923.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to Athila retroelement ORF2, putative  
At5g31962	chr5:011472357	0.0	C/11472357-11473802	AT5G31962.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 7.6e-12 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At5g32002	chr5:011474497	0.0	C/11474497-11478579	AT5G32002.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 7.5e-200 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At5g32042	chr5:011479953	0.0	W/11479953-11483063	AT5G32042.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.9e-41 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g32082	chr5:011484471	0.0	W/11484471-11485445	AT5G32082.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 2.6e-05 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At5g32122	chr5:011487134	0.0	W/11487134-11488177	AT5G32122.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g32162	chr5:011497153	0.0	C/11497153-11498490	AT5G32162.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to P0474G09.36, similar to mutator-like transposase, putative; blastp match of 39% identity and 2.8e-10 P-value to GP|28201326|dbj|BAC56834.1||AP005309 P0474G09.36 {Oryza sativa (japonica cultivar-group)}  
At5g30400	chr5:011499013	0.0	C/11499013-11500014	AT5G30400.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 3.0e-29 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At5g31905	chr5:011502429	0.0	C/11502429-11503175	AT5G31905.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.1e-09 P-value blast match to GB:AAC24836 pol polyprotein (Ty1_Copia-element) (Candida albicans)  
At5g30410	chr5:011504749	0.0	W/11504749-11506398	AT5G30410.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g31355	chr5:011506492	0.0	C/11506492-11509806	AT5G31355.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 9.8e-153 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At5g31496	chr5:011510033	0.0	C/11510033-11512009	AT5G31496.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 8.1e-10 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At5g31637	chr5:011515442	0.0	C/11515442-11516644	AT5G31637.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 2.4e-14 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At5g31778	chr5:011517598	0.0	C/11517598-11518965	AT5G31778.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 3.5e-07 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At5g31919	chr5:011519920	0.0	C/11519920-11521244	AT5G31919.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 0.00019 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At5g31989	chr5:011521176	0.0	W/11521176-11522261	AT5G31989.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 6.7e-11 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g32060	chr5:011527891	0.0	W/11527891-11533149	AT5G32060.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 3.2e-201 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At5g30420	chr5:011533469	0.0	C/11533469-11537215	AT5G30420.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At5g31412	chr5:011543554	0.0	C/11543554-11543768,11543309-11543435,11542811-11543190,11542323-11542609,11541890-11542008,11541463-11541636	AT5G31412.1  CDS  go_function protein dimerization activity|GO:0046983||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein dimerization  note protein dimerization; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Protein of unknown function DUF659 (InterPro:IPR007021), Protein of unknown function DUF1544 (InterPro:IPR011523); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43260.1); Has 505 Blast hits to 374 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 499; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G31412.1p  transcript_id AT5G31412.1  protein_id AT5G31412.1p  transcript_id AT5G31412.1  
At5g31807	chr5:011548174	0.0	C/11548174-11549679	AT5G31807.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 1.4e-05 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At5g30440	chr5:011551762	0.0	C/11551762-11552832	AT5G30440.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 4.6e-22 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At5g31511	chr5:011555408	0.0	W/11555408-11558380	AT5G31511.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 1.8e-70 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays)  
At5g30450	chr5:011559203	0.0	W/11559203-11561951	AT5G30450.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 4.3e-19 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At5g30721	chr5:011563124	0.0	W/11563124-11564305	AT5G30721.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.9e-17 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At5g30460	chr5:011564677	0.0	W/11564677-11565897	AT5G30460.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g30648	chr5:011566337	0.0	C/11566337-11566789	AT5G30648.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 5.3e-39 P-value blast match to F23C08 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)  
At5g30870	chr5:011567516	0.0	W/11567516-11568304	AT5G30870.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g31092	chr5:011569502	0.0	W/11569502-11572297	AT5G31092.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 6.1e-263 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g31314	chr5:011573252	0.0	W/11573252-11573608	AT5G31314.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to putative athila-like protein  
At5g31536	chr5:011575368	0.0	W/11575368-11575838	AT5G31536.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g31758	chr5:011576745	0.0	W/11576745-11577128	AT5G31758.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g31980	chr5:011578104	0.0	W/11578104-11580836	AT5G31980.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.3e-304 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g30470	chr5:011587319	0.0	W/11587319-11589681	AT5G30470.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 4.1e-26 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)  
At5g30480	chr5:011590737	0.0	W/11590737-11591989	AT5G30480.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 6.2e-37 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At5g30207	chr5:011592943	0.0	C/11592943-11595226	AT5G30207.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 4.7e-111 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At5g30269	chr5:011596127	0.0	W/11596127-11610717	AT5G30269.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.3e-141 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At5g30490	chr5:011612199	0.0	W/11612199-11612351,11612437-11612619,11613897-11614271	AT5G30490.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bucentaur or craniofacial development (InterPro:IPR011421); Has 246 Blast hits to 239 proteins in 110 species: Archae - 0; Bacteria - 14; Metazoa - 103; Fungi - 65; Plants - 25; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT5G30490.1p  transcript_id AT5G30490.1  protein_id AT5G30490.1p  transcript_id AT5G30490.1  
At5g30490	chr5:011612199	0.0	W/11612199-11612351,11612437-11612619,11613897-11614271	AT5G30490.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bucentaur or craniofacial development (InterPro:IPR011421); Has 246 Blast hits to 239 proteins in 110 species: Archae - 0; Bacteria - 14; Metazoa - 103; Fungi - 65; Plants - 25; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT5G30490.2p  transcript_id AT5G30490.2  protein_id AT5G30490.2p  transcript_id AT5G30490.2  
At5g30500	chr5:011615345	0.0	W/11615345-11615677,11616048-11616371,11616496-11616594,11616696-11616926	AT5G30500.1  CDS  go_function transferase activity, transferring glycosyl groups|GO:0016757||IEA  go_component cellular_component|GO:0005575||ND  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product galactinol synthase, putative  note galactinol synthase, putative; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: AtGolS6 (Arabidopsis thaliana galactinol synthase 6); transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT4G26250.1); Has 727 Blast hits to 726 proteins in 177 species: Archae - 0; Bacteria - 38; Metazoa - 212; Fungi - 150; Plants - 226; Viruses - 63; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT5G30500.1p  transcript_id AT5G30500.1  protein_id AT5G30500.1p  transcript_id AT5G30500.1  
At5g30510	chr5:011620921	0.0	C/11620921-11621223,11620508-11620783,11620353-11620433,11619962-11620243,11619789-11619899,11619623-11619709,11619262-11619372	AT5G30510.1  CDS  gene_syn ARRPS1, RIBOSOMAL PROTEIN S1, RPS1  gene RPS1  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process translation|GO:0006412||IEA  go_function RNA binding|GO:0003723||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_function RNA binding|GO:0003723||ISS  product RPS1 (RIBOSOMAL PROTEIN S1); RNA binding / structural constituent of ribosome  note RIBOSOMAL PROTEIN S1 (RPS1); FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation; LOCATED IN: thylakoid, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S1 (InterPro:IPR000110), S1, RNA binding (InterPro:IPR003029); BEST Arabidopsis thaliana protein match is: S1 RNA-binding domain-containing protein (TAIR:AT1G71720.1); Has 17303 Blast hits to 11893 proteins in 1518 species: Archae - 42; Bacteria - 10843; Metazoa - 147; Fungi - 116; Plants - 199; Viruses - 0; Other Eukaryotes - 5956 (source: NCBI BLink).  protein_id AT5G30510.1p  transcript_id AT5G30510.1  protein_id AT5G30510.1p  transcript_id AT5G30510.1  
At5g29646	chr5:011622149	0.0	C/11622149-11630296	AT5G29646.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 1.9e-233 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At5g29708	chr5:011631511	0.0	C/11631511-11634456	AT5G29708.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At5g30520	chr5:011636498	0.0	C/11636498-11636638,11636192-11636413	AT5G30520.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G30520.1p  transcript_id AT5G30520.1  protein_id AT5G30520.1p  transcript_id AT5G30520.1  
At5g30532	chr5:011637179	0.0	C/11637179-11637949	AT5G30532.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g30545	chr5:011641770	0.0	C/11641770-11643020	AT5G30545.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 1.1e-34 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At5g31087	chr5:011644438	0.0	C/11644438-11649471	AT5G31087.1  mRNA_TE_gene  pseudo  gene_syn AT5G29960, AT5G30523  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.4e-153 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g31651	chr5:011651769	0.0	C/11651769-11653077	AT5G31651.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 7.7e-100 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays)  
At5g31668	chr5:011653108	0.0	W/11653108-11654329	AT5G31668.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 6.8e-40 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays)  
At5g31685	chr5:011657833	0.0	W/11657833-11659707	AT5G31685.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G31540.1); similar to hypothetical protein 27.t00126 [Brassica oleracea] (GB:ABD65062.1)  
At5g31702	chr5:011664596	0.0	C/11664596-11667214	AT5G31702.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g31719	chr5:011689260	0.0	C/11689260-11692220	AT5G31719.1  mRNA_TE_gene  pseudo  note Transposable element gene, Athila retroelement ORF1 protein, contains Pfam PF03078: ATHILA ORF-1 family  
At5g31736	chr5:011692642	0.0	C/11692642-11695374	AT5G31736.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.7e-306 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g31753	chr5:011696730	0.0	W/11696730-11697699	AT5G31753.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32312.1)  
At5g31770	chr5:011701226	0.0	W/11701226-11701762	AT5G31770.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.7e-53 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g31787	chr5:011713113	0.0	W/11713113-11713641	AT5G31787.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32312.1)  
At5g31804	chr5:011715184	0.0	C/11715184-11721564	AT5G31804.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.3e-259 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g31821	chr5:011739277	0.0	W/11739277-11741176	AT5G31821.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 6.2e-86 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At5g31838	chr5:011742646	0.0	C/11742646-11742984	AT5G31838.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G10285.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G06728.1)  
At5g31855	chr5:011744501	0.0	C/11744501-11746159	AT5G31855.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g31873	chr5:011746240	0.0	W/11746240-11747771	AT5G31873.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30816.1)  
At5g31891	chr5:011749394	0.0	C/11749394-11752198	AT5G31891.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 0. P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g31909	chr5:011765720	0.0	W/11765720-11765950	AT5G31909.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At5g31927	chr5:011767478	0.0	C/11767478-11772031	AT5G31927.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.3e-132 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g31945	chr5:011773773	0.0	W/11773773-11776512	AT5G31945.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 7.4e-299 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g31963	chr5:011777654	0.0	W/11777654-11779488	AT5G31963.1  mRNA_TE_gene  pseudo  note Transposable element gene, athila retroelement ORF1 protein, contains Pfam PF03078: ATHILA ORF-1 family  
At5g31981	chr5:011780620	0.0	W/11780620-11781807	AT5G31981.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g31999	chr5:011782797	0.0	C/11782797-11784866	AT5G31999.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.3e-44 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g32017	chr5:011785055	0.0	W/11785055-11785126	AT5G32017.1  tRNA  gene_syn 68363.TRNA-ASP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asp (anticodon: GTC)  transcript_id AT5G32017.1  
At5g32035	chr5:011797904	0.0	C/11797904-11798515	AT5G32035.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g32053	chr5:011800200	0.0	C/11800200-11802224	AT5G32053.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g32071	chr5:011803545	0.0	C/11803545-11806277	AT5G32071.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 7.8e-293 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g32089	chr5:011807471	0.0	C/11807471-11808190	AT5G32089.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g32107	chr5:011813521	0.0	C/11813521-11816463	AT5G32107.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g32125	chr5:011816895	0.0	C/11816895-11819615	AT5G32125.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 0. P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g32143	chr5:011820826	0.0	C/11820826-11821563	AT5G32143.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g32161	chr5:011830875	0.0	W/11830875-11831456	AT5G32161.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05636.1)  
At5g32179	chr5:011832740	0.0	W/11832740-11835472	AT5G32179.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.8e-301 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g32197	chr5:011836787	0.0	W/11836787-11838733	AT5G32197.1  mRNA_TE_gene  pseudo  note Transposable element gene, athila retroelement ORF1 protein, contains Pfam PF03078: ATHILA ORF-1 family  
At5g32215	chr5:011842365	0.0	W/11842365-11845100	AT5G32215.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.6e-306 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g32228	chr5:011846410	0.0	W/11846410-11848350	AT5G32228.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g32241	chr5:011907125	0.0	C/11907125-11908798	AT5G32241.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g32254	chr5:011909710	0.0	C/11909710-11913389	AT5G32254.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 6.7e-114 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g32267	chr5:011918629	0.0	W/11918629-11921430	AT5G32267.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.5e-229 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g32280	chr5:011921538	0.0	W/11921538-11924125	AT5G32280.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.6e-123 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At5g32293	chr5:011937173	0.0	W/11937173-11939908	AT5G32293.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.2e-314 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g32306	chr5:011941158	0.0	W/11941158-11943053	AT5G32306.1  mRNA_TE_gene  pseudo  note Transposable element gene, Athila retroelement ORF2 -related, contains similarity to gi:806534  
At5g32312	chr5:011944831	0.0	C/11944831-11945358	AT5G32312.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G31787.1)  
At5g32345	chr5:011977548	0.0	W/11977548-11987264	AT5G32345.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.2e-183 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g32358	chr5:011994408	0.0	W/11994408-11998634	AT5G32358.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 5.1e-59 P-value blast match to GB:CAB39733 rotease, reverse transcriptase, ribonuclease H, integrase (Gypsy_Ty3-element) (Drosophila buzzatii)  
At5g32386	chr5:012000154	0.0	W/12000154-12004374	AT5G32386.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.7e-30 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g32400	chr5:012007314	0.0	W/12007314-12008321	AT5G32400.2  mRNA_TE_gene  pseudo  note Transposable element gene, hypothetical protein  
At5g32402	chr5:012009112	0.0	W/12009112-12011820	AT5G32402.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.1e-297 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g32404	chr5:012013300	0.0	W/12013300-12015174	AT5G32404.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to Athila retroelement ORF2, putative  
At5g32405	chr5:012016950	0.0	W/12016950-12017720	AT5G32405.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32169.1)  
At5g32406	chr5:012018666	0.0	W/12018666-12020290	AT5G32406.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 2.0e-37 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At5g32408	chr5:012021491	0.0	W/12021491-12022876	AT5G32408.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to see GB:AF077408  
At5g32410	chr5:012023371	0.0	W/12023371-12023773	AT5G32410.2  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G07710.1)  
At5g32420	chr5:012030328	0.0	C/12030328-12030933	AT5G32420.2  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g32423	chr5:012032693	0.0	C/12032693-12034552	AT5G32423.1  mRNA_TE_gene  pseudo  note Transposable element gene, Athila retroelement ORF1 protein -related, temporary automated functional assignment  
At5g32426	chr5:012035633	0.0	C/12035633-12041415	AT5G32426.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 8.6e-227 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g32430	chr5:012042600	0.0	C/12042600-12043202	AT5G32430.2  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g32431	chr5:012049749	0.0	C/12049749-12050468	AT5G32431.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g32433	chr5:012066202	0.0	C/12066202-12068976	AT5G32433.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 3.6e-155 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At5g32434	chr5:012070642	0.0	C/12070642-12071381	AT5G32434.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g32436	chr5:012072626	0.0	C/12072626-12073943	AT5G32436.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 8.5e-34 P-value blast match to GB:CAB39733 rotease, reverse transcriptase, ribonuclease H, integrase (Gypsy_Ty3-element) (Drosophila buzzatii)  
At5g32440	chr5:012077014	0.0	W/12077014-12077199,12077472-12077631,12077746-12077933,12078034-12078207,12078310-12078396	AT5G32440.1  CDS  gene_syn F18O9.50, F18O9_50  go_component chloroplast|GO:0009507||IEA  product unknown protein  note LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80040.1); Has 303 Blast hits to 289 proteins in 67 species: Archae - 0; Bacteria - 2; Metazoa - 74; Fungi - 21; Plants - 93; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).  protein_id AT5G32440.1p  transcript_id AT5G32440.1  protein_id AT5G32440.1p  transcript_id AT5G32440.1  
At5g32440	chr5:012077014	0.0	W/12077014-12077199,12077472-12077631,12077746-12077933,12078062-12078091	AT5G32440.2  CDS  gene_syn F18O9.50, F18O9_50  go_component chloroplast|GO:0009507||IEA  product unknown protein  note LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); Has 85 Blast hits to 85 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G32440.2p  transcript_id AT5G32440.2  protein_id AT5G32440.2p  transcript_id AT5G32440.2  
At5g32450	chr5:012079707	0.0	W/12079707-12079712,12079792-12079898,12079977-12080052,12080226-12080297,12080370-12080426,12080504-12080844,12080971-12081094,12081297-12081317	AT5G32450.1  CDS  gene_syn F18O9.60, F18O9_60  go_process oxidation reduction|GO:0055114||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function nucleic acid binding|GO:0003676||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT4G17720.1); Has 251 Blast hits to 249 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 74; Plants - 139; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT5G32450.1p  transcript_id AT5G32450.1  protein_id AT5G32450.1p  transcript_id AT5G32450.1  
At5g32460	chr5:012084071	0.0	C/12084071-12084148,12083699-12083984,12083499-12083611,12083144-12083408,12082880-12083070,12082522-12082786,12082307-12082446,12082015-12082215,12081803-12081856	AT5G32460.1  CDS  gene_syn F18O9.70, F18O9_70  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: MEE45 (maternal effect embryo arrest 45); DNA binding / transcription factor (TAIR:AT4G00260.1).  protein_id AT5G32460.1p  transcript_id AT5G32460.1  protein_id AT5G32460.1p  transcript_id AT5G32460.1  
At5g32470	chr5:012088220	0.0	C/12088220-12088569,12087567-12087675,12086756-12087046,12086247-12086655,12085847-12086113,12085328-12085755	AT5G32470.1  CDS  gene_syn F18O9.80, F18O9_80  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem oxygenase-like, multi-helical (InterPro:IPR016084), TENA/THI-4 protein/Coenzyme PQQ biosynthesis protein C (InterPro:IPR004305); Has 1039 Blast hits to 1039 proteins in 384 species: Archae - 43; Bacteria - 698; Metazoa - 2; Fungi - 110; Plants - 26; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).  protein_id AT5G32470.1p  transcript_id AT5G32470.1  protein_id AT5G32470.1p  transcript_id AT5G32470.1  
At5g32471	chr5:012098265	0.0	W/12098265-12099650	AT5G32471.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At5g32473	chr5:012099857	0.0	C/12099857-12101337	AT5G32473.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g32475	chr5:012102512	0.0	C/12102512-12104578	AT5G32475.1  mRNA_TE_gene  pseudo  note Transposable element gene, Athila retroelement ORF2 -related  
At5g32481	chr5:012106066	0.0	C/12106066-12110796	AT5G32481.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 6.5e-294 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g32483	chr5:012111919	0.0	C/12111919-12112694	AT5G32483.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g32485	chr5:012112740	0.0	W/12112740-12113504	AT5G32485.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 0.00082 P-value blast match to GB:226407 retrotransposon del1-46 (Gypsy_Ty3-element) (Lilium henryi)  
At5g32482	chr5:012114982	0.0	W/12114982-12116007	AT5G32482.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G33303.1); similar to Zinc knuckle containing protein [Brassica oleracea] (GB:ABD65024.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878)  
At5g32484	chr5:012116158	0.0	W/12116158-12119634	AT5G32484.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.9e-125 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)  
At5g32487	chr5:012119770	0.0	C/12119770-12122316	AT5G32487.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp1/En/Spm), has a 2.4e-71 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)  
At5g32486	chr5:012123526	0.0	W/12123526-12124662	AT5G32486.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.8e-178 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g32489	chr5:012125630	0.0	C/12125630-12126732	AT5G32489.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g32488	chr5:012127960	0.0	C/12127960-12128881	AT5G32488.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, temporary automated functional assignment  
At5g32490	chr5:012129478	0.0	C/12129478-12130279	AT5G32490.1  mRNA_TE_gene  pseudo  gene_syn T15F17.20, T15F17_20  note Transposable element gene, pseudogene, hypothetical protein  
At5g32495	chr5:012131937	0.0	C/12131937-12133832	AT5G32495.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g32505	chr5:012135292	0.0	C/12135292-12137910	AT5G32505.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 6.7e-299 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g32510	chr5:012138752	0.0	C/12138752-12139374	AT5G32510.2  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g32515	chr5:012140385	0.0	C/12140385-12140969	AT5G32515.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g32511	chr5:012142711	0.0	C/12142711-12144657	AT5G32511.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g32512	chr5:012146025	0.0	C/12146025-12148775	AT5G32512.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.1e-290 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g32517	chr5:012150099	0.0	C/12150099-12151013	AT5G32517.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g32519	chr5:012151081	0.0	W/12151081-12151728	AT5G32519.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.2e-23 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g32513	chr5:012153710	0.0	W/12153710-12156646	AT5G32513.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.4e-250 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g32514	chr5:012160428	0.0	W/12160428-12164246	AT5G32514.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.6e-126 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At5g32516	chr5:012165300	0.0	W/12165300-12167168	AT5G32516.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g32521	chr5:012170271	0.0	C/12170271-12176294	AT5G32521.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 0. P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At5g32518	chr5:012177866	0.0	W/12177866-12180943	AT5G32518.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.5e-246 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus)  
At5g32522	chr5:012183153	0.0	W/12183153-12184489	AT5G32522.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At5g32520	chr5:012190079	0.0	W/12190079-12192625	AT5G32520.1  mRNA_TE_gene  pseudo  gene_syn F3D18.10, F3D18_10  function pseudogene of unknown protein  note Transposable element gene, pseudogene, expressed protein, predicted proteins, Arabidopsis thaliana and others  
At5g32525	chr5:012192828	0.0	C/12192828-12193774	AT5G32525.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 5.2e-51 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At5g32540	chr5:012195731	0.0	W/12195731-12199558	AT5G32540.1  mRNA_TE_gene  pseudo  gene_syn F3D18.30, F3D18_30  note Transposable element gene, pseudogene, hypothetical protein, predicted proteins, Arabidopsis thaliana similar to hypothetical protein GI:4263830 from (Arabidopsis thaliana) (similar to MYOSIN HEAVY CHAIN (Encephalitozoon cuniculi) GI:19074177) similar to hypothetical protein GI:4263830 from (Arabidopsis thaliana) (similar to MYOSIN HEAVY CHAIN (Encephalitozoon cuniculi) GI:19074177) (similar to MYOSIN HEAVY CHAIN (Encephalitozoon cuniculi) GI:19074177)  
At5g32563	chr5:012200248	0.0	W/12200248-12204138	AT5G32563.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 3.8e-149 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At5g32566	chr5:012204733	0.0	W/12204733-12206865	AT5G32566.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 1.9e-32 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At5g32569	chr5:012207553	0.0	W/12207553-12209270	AT5G32569.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At5g32572	chr5:012210246	0.0	C/12210246-12210551	AT5G32572.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.4e-16 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At5g32576	chr5:012211627	0.0	C/12211627-12212207	AT5G32576.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g32580	chr5:012213984	0.0	W/12213984-12220094	AT5G32580.1  mRNA_TE_gene  pseudo  gene_syn F3D18.70, F3D18_70  note Transposable element gene, gypsy-like retrotransposon family, has a 8.2e-241 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At5g32590	chr5:012223710	0.0	C/12223710-12224322,12223000-12223632,12222898-12222945,12222717-12222799,12221926-12222589,12221589-12221833	AT5G32590.1  CDS  gene_syn F3D18.80, F3D18_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product myosin heavy chain-related  note myosin heavy chain-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43148.1); Has 5919 Blast hits to 4657 proteins in 444 species: Archae - 87; Bacteria - 455; Metazoa - 3062; Fungi - 591; Plants - 188; Viruses - 32; Other Eukaryotes - 1504 (source: NCBI BLink).  protein_id AT5G32590.1p  transcript_id AT5G32590.1  protein_id AT5G32590.1p  transcript_id AT5G32590.1  
At5g32591	chr5:012225111	0.0	C/12225111-12226634	AT5G32591.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, PF03078: ATHILA ORF-1 family  
At5g32592	chr5:012228143	0.0	C/12228143-12231785	AT5G32592.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.2e-127 P-value blast match to gb|AAL06422.1|AF378081_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At5g32593	chr5:012232551	0.0	W/12232551-12235535	AT5G32593.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 3.7e-163 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At5g32597	chr5:012235759	0.0	C/12235759-12235890	AT5G32597.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G32597.1p  transcript_id AT5G32597.1  protein_id AT5G32597.1p  transcript_id AT5G32597.1  
At5g32595	chr5:012236347	0.0	C/12236347-12238106	AT5G32595.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.1e-97 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g32594	chr5:012238158	0.0	W/12238158-12240479	AT5G32594.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 6.3e-30 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g32596	chr5:012242587	0.0	C/12242587-12244472	AT5G32596.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 5.3e-13 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At5g32598	chr5:012245006	0.0	W/12245006-12249415	AT5G32598.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 7.4e-171 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At5g32600	chr5:012249699	0.0	C/12249699-12251643	AT5G32600.1  mRNA_TE_gene  pseudo  gene_syn F3D18.1  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G60930.1)  
At5g32605	chr5:012254967	0.0	C/12254967-12256655	AT5G32605.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G06140.1)  
At5g32610	chr5:012256677	0.0	C/12256677-12259096	AT5G32610.1  mRNA_TE_gene  pseudo  gene_syn F15I15.20, F15I15_20  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G33715.1)  
At5g32613	chr5:012263255	0.0	W/12263255-12263365,12263451-12263701,12263810-12263939,12264016-12264095,12264179-12264264,12264326-12265041	AT5G32613.1  CDS  go_component chloroplast|GO:0009507||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc knuckle (CCHC-type) family protein  note zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: zinc knuckle (CCHC-type) family protein (TAIR:AT2G07760.1); Has 34 Blast hits to 34 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 24; Viruses - 4; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G32613.1p  transcript_id AT5G32613.1  protein_id AT5G32613.1p  transcript_id AT5G32613.1  
At5g32616	chr5:012265317	0.0	W/12265317-12267974	AT5G32616.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 7.5e-18 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)  
At5g32620	chr5:012269749	0.0	W/12269749-12270681	AT5G32620.1  mRNA_TE_gene  pseudo  gene_syn F15I15.30, F15I15_30  note Transposable element gene, similar to DNA binding [Arabidopsis thaliana] (TAIR:AT3G15320.1); similar to hypothetical protein 26.t00020 [Brassica oleracea] (GB:ABD65000.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057)  
At5g32621	chr5:012271360	0.0	W/12271360-12273728	AT5G32621.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15310.1); similar to hypothetical protein 24.t00017 [Brassica oleracea] (GB:ABD64939.1); contains InterPro domain Protein of unknown function DUF635; (InterPro:IPR006912); contains InterPro domain Bacterial adhesion; (InterPro:IPR008966)  
At5g32619	chr5:012278000	0.0	C/12278000-12278078,12277596-12277792	AT5G32619.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 16 Blast hits to 16 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G32619.1p  transcript_id AT5G32619.1  protein_id AT5G32619.1p  transcript_id AT5G32619.1  
At5g32623	chr5:012282239	0.0	C/12282239-12283972	AT5G32623.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g32625	chr5:012284779	0.0	C/12284779-12286164	AT5G32625.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 9.5e-50 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g32627	chr5:012286881	0.0	C/12286881-12288728	AT5G32627.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 7.4e-28 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g32622	chr5:012289344	0.0	W/12289344-12291161	AT5G32622.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.0e-135 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g32624	chr5:012292463	0.0	W/12292463-12294049	AT5G32624.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to putative Athila retroelement ORF2  
At5g32626	chr5:012297344	0.0	C/12297344-12299080	AT5G32626.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.5e-45 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g32628	chr5:012300332	0.0	C/12300332-12301534	AT5G32628.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to mutator-like transposase, putative  
At5g32630	chr5:012310537	0.0	C/12310537-12315067	AT5G32630.1  mRNA_TE_gene  pseudo  gene_syn F15I15.40, F15I15_40  note Transposable element gene, pseudogene, similar to putative helicase, various predicted helicase proteins, Arabidopsis thaliana and others; blastp match of 39% identity and 3.4e-202 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)}  
At5g32654	chr5:012317804	0.0	C/12317804-12321334	AT5G32654.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.8e-78 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g32678	chr5:012326881	0.0	W/12326881-12329676	AT5G32678.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 0. P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g32690	chr5:012332283	0.0	W/12332283-12390801	AT5G32690.1  pseudogenic_transcript  pseudo  function Pseudogene of AT2G29880  
At5g32702	chr5:012332885	0.0	C/12332885-12335557	AT5G32702.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.2e-150 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element)  
At5g32726	chr5:012340216	0.0	C/12340216-12342177	AT5G32726.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to putative Athila retroelement ORF1 protein  
At5g32750	chr5:012343225	0.0	C/12343225-12348933	AT5G32750.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.5e-224 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g32775	chr5:012349746	0.0	C/12349746-12350642	AT5G32775.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30700.1)  
At5g32800	chr5:012352679	0.0	W/12352679-12353216	AT5G32800.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.2e-66 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g32825	chr5:012353841	0.0	C/12353841-12360571	AT5G32825.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 1.2e-296 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At5g32850	chr5:012361415	0.0	W/12361415-12363883	AT5G32850.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.5e-178 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g32875	chr5:012367879	0.0	C/12367879-12370254	AT5G32875.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.1e-79 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g32900	chr5:012373306	0.0	C/12373306-12373893	AT5G32900.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 5.6e-05 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)  
At5g32925	chr5:012381879	0.0	W/12381879-12385472	AT5G32925.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 1.0e-105 P-value blast match to GB:AAA66266 unknown protein ORF1 transposable element En-1 (CACTA-element) (Zea mays)  
At5g32950	chr5:012386481	0.0	W/12386481-12388874	AT5G32950.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 3.5e-33 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At5g32975	chr5:012391786	0.0	W/12391786-12393114	AT5G32975.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to putative transposase, similar to En/Spm-like transposon protein, putative; blastp match of 48% identity and 9.4e-30 P-value to GP|15987055|gb|AAL11884.1|AF412282_1|AF412282 putative transposase {Zea mays}  
At5g33000	chr5:012396113	0.0	W/12396113-12396754	AT5G33000.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g33025	chr5:012398111	0.0	W/12398111-12400792	AT5G33025.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.0e-305 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g33050	chr5:012402098	0.0	W/12402098-12408478	AT5G33050.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 6.2e-129 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At5g33070	chr5:012419575	0.0	C/12419575-12420057	AT5G33070.1  pseudogenic_transcript  pseudo  function Encodes a defensin-like (DEFL) family protein.  
At5g33075	chr5:012423224	0.0	C/12423224-12425701	AT5G33075.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 4.5e-216 P-value blast match to GB:AAD12998 pol polyprotein (Ty1_Copia-element) (Zea mays)  
At5g33100	chr5:012427569	0.0	W/12427569-12428243	AT5G33100.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to contains similarity to Arabidopsis thaliana hypothetical protein (GB:AC004483)  
At5g33125	chr5:012429428	0.0	W/12429428-12433051	AT5G33125.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 8.4e-270 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g33150	chr5:012434286	0.0	W/12434286-12435257	AT5G33150.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to contains similarity to Arabidopsis thaliana hypothetical protein (GB:AC004483)  
At5g33175	chr5:012446149	0.0	W/12446149-12448569	AT5G33175.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 4.0e-31 P-value blast match to GB:BAA01703 ORF (Ty1_Copia-element) (Drosophila simulans)  
At5g33200	chr5:012451652	0.0	C/12451652-12454741	AT5G33200.1  mRNA_TE_gene  pseudo  gene_syn T29A4.10, T29A4_10  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42400.1); similar to hypothetical protein 31.t00031 [Brassica oleracea] (GB:ABD65118.1); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At5g33202	chr5:012455770	0.0	C/12455770-12457176	AT5G33202.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to putative retroelement pol polyprotein  
At5g33204	chr5:012457549	0.0	C/12457549-12461543	AT5G33204.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 6.9e-99 P-value blast match to F11B20 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family)  
At5g33207	chr5:012462512	0.0	C/12462512-12464082	AT5G33207.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 2.0e-122 P-value blast match to At5g59620.1/14-257 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At5g33210	chr5:012465615	0.0	C/12465615-12465713,12465057-12465479	AT5G33210.1  CDS  gene_syn SHI-RELATED SEQUENCE 8, SRS8, T29A4.20, T29A4_20  gene SRS8  function A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. SRS8 is a putative pseudogene.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SRS8 (SHI-RELATED SEQUENCE 8)  note SHI-RELATED SEQUENCE 8 (SRS8); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: STY1 (STYLISH 1); protein heterodimerization/ transcription factor (TAIR:AT3G51060.1); Has 155 Blast hits to 155 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 155; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G33210.1p  transcript_id AT5G33210.1  protein_id AT5G33210.1p  transcript_id AT5G33210.1  
At5g33220	chr5:012466110	0.0	W/12466110-12468921	AT5G33220.1  mRNA_TE_gene  pseudo  gene_syn T29A4.30, T29A4_30  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G23710.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09370.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G47330.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048)  
At5g33223	chr5:012469886	0.0	C/12469886-12470725	AT5G33223.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to contains similarity to Arabidopsis thaliana hypothetical protein (GB:AC004483)  
At5g33226	chr5:012472882	0.0	C/12472882-12475965	AT5G33226.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.3e-256 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g33230	chr5:012476677	0.0	W/12476677-12477134	AT5G33230.1  mRNA_TE_gene  pseudo  gene_syn T29A4.40, T29A4_40  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G28960.1)  
At5g33232	chr5:012479274	0.0	C/12479274-12481736	AT5G33232.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 1.0e-81 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At5g33234	chr5:012483583	0.0	W/12483583-12487437	AT5G33234.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 3.1e-153 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays)  
At5g33237	chr5:012488415	0.0	C/12488415-12489239	AT5G33237.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 6.8e-30 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g33240	chr5:012490165	0.0	C/12490165-12490991	AT5G33240.1  mRNA_TE_gene  pseudo  gene_syn T29A4.50, T29A4_50  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42980.1); similar to Nucleic acid-binding, OB-fold, subgroup [Medicago truncatula] (GB:ABE80110.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At5g33250	chr5:012493615	0.0	W/12493615-12494901	AT5G33250.1  mRNA_TE_gene  pseudo  gene_syn T29A4.60, T29A4_60  note Transposable element gene, pseudogene, hypothetical protein, predicted proteins - Arabidopsis thaliana  
At5g33251	chr5:012499072	0.0	W/12499072-12500433	AT5G33251.1  pseudogenic_transcript  pseudo  function pseudogene of unknown protein  note expressed protein  
At5g33252	chr5:012502073	0.0	W/12502073-12506833	AT5G33252.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 4.1e-311 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At5g33253	chr5:012512724	0.0	W/12512724-12516182	AT5G33253.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 1.9e-29 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At5g33254	chr5:012518370	0.0	C/12518370-12519302	AT5G33254.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to contains similarity to Arabidopsis thaliana hypothetical protein (GB:AC004483)  
At5g33255	chr5:012520677	0.0	C/12520677-12522492	AT5G33255.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g33256	chr5:012523691	0.0	C/12523691-12529391	AT5G33256.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 5.7e-218 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g33257	chr5:012530545	0.0	C/12530545-12531174	AT5G33257.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to contains similarity to Arabidopsis thaliana hypothetical protein (GB:AC004483)  
At5g33258	chr5:012531700	0.0	C/12531700-12532410	AT5G33258.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At5g33259	chr5:012532646	0.0	C/12532646-12533260	AT5G33259.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to mutator-like transposase, putative  
At5g33260	chr5:012534632	0.0	C/12534632-12535846	AT5G33260.1  mRNA_TE_gene  pseudo  gene_syn T29A4.70, T29A4_70  note Transposable element gene, pseudogene, hypothetical protein, predicted proteins - Arabidopsis thaliana  
At5g33270	chr5:012542039	0.0	W/12542039-12543313	AT5G33270.1  mRNA_TE_gene  pseudo  gene_syn T29A4.80, T29A4_80  note Transposable element gene, pseudogene, similar to OSJNBb0043H09.1, predicted proteins - Arabidopsis thaliana; blastp match of 52% identity and 5.6e-51 P-value to GP|21740634|emb|CAD40195.1||AL606611 OSJNBb0043H09.1 {Oryza sativa (japonica cultivar-group)}  
At5g33280	chr5:012549280	0.0	W/12549280-12549410,12549495-12549695,12549780-12549957,12550054-12550316,12550451-12550714,12550787-12551915,12552180-12552305	AT5G33280.1  CDS  gene_syn F19N2.1  go_component membrane|GO:0016020||IEA  go_process chloride transport|GO:0006821||IEA  go_component intracellular|GO:0005622||ISS  go_process chloride transport|GO:0006821||ISS  go_function voltage-gated chloride channel activity|GO:0005247||ISS  go_function anion channel activity|GO:0005253||ISS  product chloride channel-like (CLC) protein, putative  note chloride channel-like (CLC) protein, putative; FUNCTIONS IN: anion channel activity, voltage-gated chloride channel activity; INVOLVED IN: chloride transport; LOCATED IN: intracellular, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chloride channel, core (InterPro:IPR014743), Chloride channel, voltage gated (InterPro:IPR001807), Chloride channel plant CLC (InterPro:IPR002251), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CLC-C (CHLORIDE CHANNEL C); anion channel/ voltage-gated chloride channel (TAIR:AT5G49890.1); Has 4315 Blast hits to 4052 proteins in 960 species: Archae - 71; Bacteria - 2408; Metazoa - 873; Fungi - 219; Plants - 177; Viruses - 0; Other Eukaryotes - 567 (source: NCBI BLink).  protein_id AT5G33280.1p  transcript_id AT5G33280.1  protein_id AT5G33280.1p  transcript_id AT5G33280.1  
At5g33285	chr5:012555190	0.0	C/12555190-12556428	AT5G33285.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to Hypothetical protein with similarity to putative Ac-like transposases, similar to Ac-like transposase; blastp match of 37% identity and 1.9e-15 P-value to GP|20042974|gb|AAM08782.1|AC016780_12|AC016780 Hypothetical protein with similarity to putative Ac-like transposases {Oryza sativa}  
At5g33290	chr5:012558439	0.0	W/12558439-12558780,12558928-12559049,12560157-12560532,12561178-12561840	AT5G33290.1  CDS  gene_syn F19N2.10, F19N2_10, XGD1, XYLOGALACTURONAN DEFICIENT 1  gene XGD1  function Acts as a xylogalacturonan xylosyltransferase within the XGA biosynthesis pathway. Involved in pectin biosynthesis.  go_component Golgi apparatus|GO:0005794|18460606|IDA  go_component membrane|GO:0016020||ISS  go_process xylogalacturonan metabolic process|GO:0010398|18460606|IMP  go_process pectin biosynthetic process|GO:0045489|18460606|IMP  go_function catalytic activity|GO:0003824||ISS  go_function UDP-xylosyltransferase activity|GO:0035252|18460606|IDA  product XGD1 (XYLOGALACTURONAN DEFICIENT 1); UDP-xylosyltransferase/ catalytic  note XYLOGALACTURONAN DEFICIENT 1 (XGD1); FUNCTIONS IN: UDP-xylosyltransferase activity, catalytic activity; INVOLVED IN: xylogalacturonan metabolic process, pectin biosynthetic process; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: catalytic/ transferase, transferring glycosyl groups (TAIR:AT3G42180.1); Has 948 Blast hits to 944 proteins in 94 species: Archae - 0; Bacteria - 8; Metazoa - 344; Fungi - 10; Plants - 490; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT5G33290.1p  transcript_id AT5G33290.1  protein_id AT5G33290.1p  transcript_id AT5G33290.1  
At5g33300	chr5:012565565	0.0	C/12565565-12565675,12565169-12565282,12564974-12565078,12564798-12564878,12564275-12564346,12564079-12564172,12563960-12563991,12563645-12563718,12563458-12563535,12563228-12563372,12562789-12563145,12562649-12562705	AT5G33300.1  CDS  gene_syn F19N2.20, F19N2_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product chromosome-associated kinesin-related  note chromosome-associated kinesin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: chromosome-associated kinesin, putative (TAIR:AT5G60930.1); Has 9735 Blast hits to 7175 proteins in 473 species: Archae - 83; Bacteria - 616; Metazoa - 4775; Fungi - 604; Plants - 329; Viruses - 16; Other Eukaryotes - 3312 (source: NCBI BLink).  protein_id AT5G33300.1p  transcript_id AT5G33300.1  protein_id AT5G33300.1p  transcript_id AT5G33300.1  
At5g33303	chr5:012570176	0.0	W/12570176-12571226	AT5G33303.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G04135.1); similar to Integrase, catalytic re (GB:ABE86211.1)  
At5g33306	chr5:012571678	0.0	W/12571678-12577071	AT5G33306.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 5.7e-209 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At5g33310	chr5:012577321	0.0	C/12577321-12582199	AT5G33310.1  pseudogenic_transcript  pseudo  gene_syn F19N2.30, F19N2_30  note pseudogene, hypothetical protein, predicted proteins - Arabidopsis thaliana  
At5g33315	chr5:012582857	0.0	W/12582857-12583555	AT5G33315.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.7e-20 P-value blast match to GB:AAC24836 pol polyprotein (Ty1_Copia-element) (Candida albicans)  
At5g33320	chr5:012588950	0.0	W/12588950-12589333,12589836-12589958,12590051-12590203,12590399-12590484,12590582-12590666,12590750-12590869,12590956-12591024,12591115-12591244,12591332-12591408	AT5G33320.1  CDS  gene_syn ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, ARAPPT, CAB UNDEREXPRESSED 1, CUE1, F19N2.40, F19N2_40, PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, PPT  gene CUE1  function Encodes a plastid inner envelope protein PPT (phosphoenolpyruvate/phosphate translocator) that catalyzes the transport of phosphoenolpyruvate and phosphate across the inner envelope membrane of plastids.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_process transport|GO:0006810||IEA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid inner membrane|GO:0009528|10488230|TAS  go_component plastid|GO:0009536|16618929|IDA  go_process triose phosphate transport|GO:0015717||ISS  go_function triose-phosphate transmembrane transporter activity|GO:0009670||ISS  go_function antiporter activity|GO:0015297||ISS  product CUE1 (CAB UNDEREXPRESSED 1); antiporter/ triose-phosphate transmembrane transporter  note CAB UNDEREXPRESSED 1 (CUE1); FUNCTIONS IN: antiporter activity, triose-phosphate transmembrane transporter activity; INVOLVED IN: triose phosphate transport, transport; LOCATED IN: mitochondrion, chloroplast, plastid, plastid inner membrane, chloroplast envelope; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Tpt phosphate/phosphoenolpyruvate translocator (InterPro:IPR004696), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: PPT2 (PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2); antiporter/ triose-phosphate transmembrane transporter (TAIR:AT3G01550.1); Has 1834 Blast hits to 1832 proteins in 272 species: Archae - 7; Bacteria - 141; Metazoa - 484; Fungi - 278; Plants - 732; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).  protein_id AT5G33320.1p  transcript_id AT5G33320.1  protein_id AT5G33320.1p  transcript_id AT5G33320.1  
At5g33330	chr5:012592408	0.0	C/12592408-12592896	AT5G33330.1  CDS  gene_syn F19N2.50, F19N2_50  go_function nucleic acid binding|GO:0003676||IEA  go_function ribonuclease H activity|GO:0004523||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function ribonuclease H activity|GO:0004523||ISS  product RNase H domain-containing protein  note RNase H domain-containing protein; FUNCTIONS IN: ribonuclease H activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Ribonuclease H (InterPro:IPR002156); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G60040.1); Has 22 Blast hits to 22 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G33330.1p  transcript_id AT5G33330.1  protein_id AT5G33330.1p  transcript_id AT5G33330.1  
At5g33340	chr5:012594474	0.0	W/12594474-12595787	AT5G33340.1  CDS  gene_syn CDR1, CONSTITUTIVE DISEASE RESISTANCE 1, F19N2.60, F19N2_60  gene CDR1  function Encodes a protein with aspartic protease activity (also known as aspartate-type endopeptidase activity). Overexpression of the gene was shown to lead to salicylic acid (SA)-mediated disease resistance upon exposure to the pathogen Pseudomonas syringae. Moreover, overexpression of this gene led to the upregulation of two pathogenesis-related genes PR1 and PR2. This upregulation was no longer observed in transgenic lines expressing the bacterial NahG gene encoding a hydroxylase suppressing SA accumulation.  go_component apoplast|GO:0048046|14765119|IEP  go_process proteolysis|GO:0006508||ISS  go_process regulation of hydrogen peroxide metabolic process|GO:0010310|14765119|IDA  go_process regulation of hydrogen peroxide metabolic process|GO:0010310|14765119|IMP  go_process regulation of salicylic acid metabolic process|GO:0010337|14765119|IMP  go_process defense response to bacterium|GO:0042742|14765119|IMP  go_function aspartic-type endopeptidase activity|GO:0004190|14765119|IDA  go_function aspartic-type endopeptidase activity|GO:0004190|14765119|ISS  product CDR1 (CONSTITUTIVE DISEASE RESISTANCE 1); aspartic-type endopeptidase  note CONSTITUTIVE DISEASE RESISTANCE 1 (CDR1); FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: regulation of hydrogen peroxide metabolic process, proteolysis, defense response to bacterium, regulation of salicylic acid metabolic process; LOCATED IN: apoplast; EXPRESSED IN: embryo, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT1G64830.1); Has 2638 Blast hits to 2620 proteins in 270 species: Archae - 0; Bacteria - 0; Metazoa - 666; Fungi - 638; Plants - 1159; Viruses - 0; Other Eukaryotes - 175 (source: NCBI BLink).  protein_id AT5G33340.1p  transcript_id AT5G33340.1  protein_id AT5G33340.1p  transcript_id AT5G33340.1  
At5g33350	chr5:012596785	0.0	W/12596785-12598098	AT5G33350.1  pseudogenic_transcript  pseudo  gene_syn F19N2.70, F19N2_70  note pseudogene, similar to P0406H10.5, nucleoid DNA-binding protein cnd41, chloroplast - Nicotiana tabacum, PIR:T01996; blastp match of 37% identity and 1.5e-57 P-value to GP|9711879|dbj|BAB07973.1||AP002524 P0406H10.5 {Oryza sativa (japonica cultivar-group)}  
At5g33355	chr5:012599319	0.0	W/12599319-12599385,12599496-12599671	AT5G33355.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G59930.1); Has 13 Blast hits to 13 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G33355.1p  transcript_id AT5G33355.1  protein_id AT5G33355.1p  transcript_id AT5G33355.1  
At5g33360	chr5:012601140	0.0	W/12601140-12601667	AT5G33360.1  mRNA_TE_gene  pseudo  gene_syn F19N2.80, F19N2_80  note Transposable element gene, similar to nucleic acid binding / ribonuclease H [Arabidopsis thaliana] (TAIR:AT1G17390.1); similar to nucleic acid binding / ribonuclease H [Arabidopsis thaliana] (TAIR:AT2G27870.1); similar to Ribonuclease H [Medicago truncatula] (GB:ABE81233.1); contains InterPro domain Ribonuclease H; (InterPro:IPR002156); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)  
At5g33365	chr5:012602147	0.0	C/12602147-12602476	AT5G33365.1  mRNA_TE_gene  pseudo  function pseudogene of unknown protein  note Transposable element gene, expressed protein, similar to reverse transcriptase, putative  
At5g33370	chr5:012604427	0.0	C/12604427-12604670,12604214-12604341,12603882-12604124,12603410-12603662,12602773-12603005	AT5G33370.1  CDS  gene_syn F19N2.90, F19N2_90  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: LTL1 (LI-TOLERANT LIPASE 1); carboxylesterase/ hydrolase, acting on ester bonds (TAIR:AT3G04290.1); Has 1733 Blast hits to 1717 proteins in 124 species: Archae - 0; Bacteria - 156; Metazoa - 1; Fungi - 8; Plants - 1553; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT5G33370.1p  transcript_id AT5G33370.1  protein_id AT5G33370.1p  transcript_id AT5G33370.1  
At5g33370	chr5:012604427	0.0	C/12604427-12604670,12604214-12604341,12603882-12604124,12603410-12603662,12602864-12602988	AT5G33370.2  CDS  gene_syn F19N2.90, F19N2_90  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, binding, carboxylesterase activity, catalytic activity; INVOLVED IN: metabolic process, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: LTL1 (LI-TOLERANT LIPASE 1); carboxylesterase/ hydrolase, acting on ester bonds (TAIR:AT3G04290.1); Has 1542 Blast hits to 1532 proteins in 79 species: Archae - 0; Bacteria - 52; Metazoa - 1; Fungi - 0; Plants - 1485; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G33370.2p  transcript_id AT5G33370.2  protein_id AT5G33370.2p  transcript_id AT5G33370.2  
At5g33380	chr5:012607810	0.0	W/12607810-12608362	AT5G33380.1  mRNA_TE_gene  pseudo  gene_syn F19N2.100, F19N2_100  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28430.1)  
At5g33381	chr5:012610179	0.0	W/12610179-12615470	AT5G33381.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.1e-68 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At5g33382	chr5:012616563	0.0	W/12616563-12621331	AT5G33382.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.3e-126 P-value blast match to GB:AAB82754 retrofit (TY1_Copia-element) (Oryza longistaminata)  
At5g33383	chr5:012623153	0.0	C/12623153-12625333	AT5G33383.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.8e-152 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g33384	chr5:012628891	0.0	C/12628891-12630594	AT5G33384.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, temporary automated functional assignment  
At5g33385	chr5:012631765	0.0	C/12631765-12634496	AT5G33385.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.6e-206 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g33386	chr5:012635785	0.0	C/12635785-12637371	AT5G33386.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to putative retroelement pol polyprotein  
At5g33387	chr5:012639704	0.0	W/12639704-12640306	AT5G33387.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to putative transposon protein  
At5g33388	chr5:012641507	0.0	W/12641507-12644260	AT5G33388.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.5e-262 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g33389	chr5:012645572	0.0	W/12645572-12647476	AT5G33389.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to Athila retroelement ORF2, putative  
At5g33391	chr5:012649194	0.0	W/12649194-12649796	AT5G33391.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to putative transposon protein  
At5g33392	chr5:012652367	0.0	W/12652367-12655045	AT5G33392.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 3.1e-137 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays)  
At5g33393	chr5:012658202	0.0	C/12658202-12658588,12657834-12657870,12657434-12657742,12656949-12657319,12656628-12656729,12656430-12656531	AT5G33393.1  CDS  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; Has 44 Blast hits to 42 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 5; Plants - 15; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT5G33393.1p  transcript_id AT5G33393.1  protein_id AT5G33393.1p  transcript_id AT5G33393.1  
At5g33390	chr5:012662372	0.0	W/12662372-12662728	AT5G33390.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: shoot apex; Has 104608 Blast hits to 24705 proteins in 1390 species: Archae - 146; Bacteria - 33599; Metazoa - 31567; Fungi - 6994; Plants - 10537; Viruses - 1434; Other Eukaryotes - 20331 (source: NCBI BLink).  protein_id AT5G33390.1p  transcript_id AT5G33390.1  protein_id AT5G33390.1p  transcript_id AT5G33390.1  
At5g33395	chr5:012664506	0.0	W/12664506-12666192	AT5G33395.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 7.1e-27 P-value blast match to At5g59620.1/14-257 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At5g33398	chr5:012667639	0.0	W/12667639-12668028	AT5G33398.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 7.5e-17 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea)  
At5g33402	chr5:012669981	0.0	C/12669981-12672312	AT5G33402.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g33404	chr5:012674828	0.0	W/12674828-12675080	AT5G33404.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 4.5e-12 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota)  
At5g33406	chr5:012677761	0.0	C/12677761-12678403,12677565-12677683,12676988-12677477,12676494-12676663,12676126-12676233	AT5G33406.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_process biological_process|GO:0008150||ND  product protein dimerization  note protein dimerization; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906); BEST Arabidopsis thaliana protein match is: DNA binding / protein dimerization (TAIR:AT4G15020.2); Has 413 Blast hits to 388 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 1; Plants - 399; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G33406.1p  transcript_id AT5G33406.1  protein_id AT5G33406.1p  transcript_id AT5G33406.1  
At5g33400	chr5:012682232	0.0	C/12682232-12682927	AT5G33400.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At5g33405	chr5:012683327	0.0	W/12683327-12684600	AT5G33405.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At5g33410	chr5:012687333	0.0	C/12687333-12688479	AT5G33410.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14455.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At5g33415	chr5:012690065	0.0	C/12690065-12694730	AT5G33415.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to putative helicase, blastp match of 40% identity and 1.9e-148 P-value to GP|14140286|gb|AAK54292.1|AC034258_10|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)}  
At5g33420	chr5:012699282	0.0	C/12699282-12701623	AT5G33420.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g33421	chr5:012704687	0.0	C/12704687-12704788	AT5G33421.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G33421.1p  transcript_id AT5G33421.1  protein_id AT5G33421.1p  transcript_id AT5G33421.1  
At5g33422	chr5:012707518	0.0	W/12707518-12710289	AT5G33422.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 3.5e-121 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At5g33424	chr5:012712014	0.0	W/12712014-12714275	AT5G33424.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.9e-135 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g33427	chr5:012715034	0.0	W/12715034-12716881	AT5G33427.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to putative transposon protein  
At5g33428	chr5:012720971	0.0	W/12720971-12727586	AT5G33428.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 1.2e-295 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At5g33432	chr5:012728899	0.0	C/12728899-12729634	AT5G33432.1  mRNA_TE_gene  pseudo  function similar to En/Spm-like transposon  note Transposable element gene, expressed protein  
At5g33436	chr5:012734109	0.0	C/12734109-12735277	AT5G33436.1  pseudogenic_transcript  pseudo  note pseudogene, similar to putative reverse transcriptase., blastp match of 24% identity and 1.2e-12 P-value to GP|21450442|gb|AAM54146.1|AC104616_5|AC104616 putative reverse transcriptase. {Oryza sativa (japonica cultivar-group)}  
At5g33441	chr5:012737079	0.0	C/12737079-12738581	AT5G33441.1  pseudogenic_transcript  pseudo  note pseudogene, similar to cytochrome P450-like protein, blastp match of 46% identity and 6.5e-67 P-value to GP|20804570|dbj|BAB92262.1||AP003232 cytochrome P450-like protein {Oryza sativa (japonica cultivar-group)}  
At5g33439	chr5:012738898	0.0	C/12738898-12739212	AT5G33439.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G33439.1  
At5g33433	chr5:012739314	0.0	C/12739314-12739690	AT5G33433.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.4e-14 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g33431	chr5:012742864	0.0	C/12742864-12744019	AT5G33431.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, temporary automated functional assignment  
At5g33434	chr5:012745751	0.0	C/12745751-12750205	AT5G33434.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 5.2e-76 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At5g33438	chr5:012752520	0.0	C/12752520-12754535	AT5G33438.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 5.4e-29 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At5g33442	chr5:012755641	0.0	W/12755641-12758275	AT5G33442.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g33533	chr5:012758856	0.0	C/12758856-12766533	AT5G33533.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.9e-112 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At5g33624	chr5:012770435	0.0	C/12770435-12776410	AT5G33624.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.9e-181 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At5g33715	chr5:012782299	0.0	C/12782299-12782787	AT5G33715.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G06140.1)  
At5g33806	chr5:012784839	0.0	W/12784839-12784917,12785183-12785629,12785709-12785879,12786276-12786398,12786855-12787015,12787269-12787298	AT5G33806.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G06688.1); Has 18 Blast hits to 15 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G33806.1p  transcript_id AT5G33806.1  protein_id AT5G33806.1p  transcript_id AT5G33806.1  
At5g33898	chr5:012787599	0.0	W/12787599-12787721,12787829-12787889,12787952-12788148,12788290-12788357,12788481-12788778	AT5G33898.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G29050.1); Has 30 Blast hits to 30 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G33898.1p  transcript_id AT5G33898.1  protein_id AT5G33898.1p  transcript_id AT5G33898.1  
At5g33990	chr5:012791432	0.0	C/12791432-12794551	AT5G33990.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 5.0e-73 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g34082	chr5:012794969	0.0	C/12794969-12796844	AT5G34082.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 2.4e-97 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At5g34174	chr5:012797197	0.0	W/12797197-12798429	AT5G34174.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 6.1e-57 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)  
At5g34266	chr5:012798682	0.0	C/12798682-12799635	AT5G34266.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to putative retroelement pol polyprotein  
At5g34358	chr5:012802378	0.0	W/12802378-12802848	AT5G34358.1  mRNA_TE_gene  pseudo  note Transposable element gene  
At5g34376	chr5:012837838	0.0	C/12837838-12838797	AT5G34376.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.4e-31 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At5g34394	chr5:012839140	0.0	W/12839140-12840366	AT5G34394.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 1.2e-56 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)  
At5g34412	chr5:012840491	0.0	C/12840491-12841837	AT5G34412.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 8.7e-05 P-value blast match to GB:BAA84457 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902444|dbj|BAA84457.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At5g34431	chr5:012888194	0.0	W/12888194-12890980	AT5G34431.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g34450	chr5:012893060	0.0	W/12893060-12894008	AT5G34450.1  mRNA_TE_gene  pseudo  gene_syn T3J11.10, T3J11_10  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05087.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At5g34460	chr5:012897307	0.0	W/12897307-12897719	AT5G34460.1  mRNA_TE_gene  pseudo  gene_syn T3J11.20, T3J11_20  note Transposable element gene, similar to replication protein-related [Arabidopsis thaliana] (TAIR:AT5G34950.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At5g34480	chr5:012898289	0.0	C/12898289-12900448	AT5G34480.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 5.7e-49 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At5g34500	chr5:012902121	0.0	W/12902121-12903143	AT5G34500.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to replication protein-related [Arabidopsis thaliana] (TAIR:AT1G35950.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At5g34520	chr5:012904125	0.0	W/12904125-12905684	AT5G34520.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, contains similarity to Xenopus laevis replication protein A1 (SW:RFA1_XENLA), similar to contains similarity to Xenopus laevis replication protein A1 (SW:RFA1_XENLA)  
At5g34540	chr5:012909116	0.0	W/12909116-12910041	AT5G34540.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05080.1); similar to hypothetical protein 31.t00030 [Brassica oleracea] (GB:ABD65117.1); contains domain HELICASE-RELATED (PTHR10492)  
At5g34560	chr5:012916588	0.0	C/12916588-12917571	AT5G34560.1  pseudogenic_transcript  pseudo  note pseudogene, uridine kinase/uracil phosphoribosyl transferas -related, similar to uridine kinase/uracil phosphoribosyl transferas, putative; blastp match of 57% identity and 2.2e-07 P-value to GP|5107696|pdb|1UPU|D Chain D, Structure Of The Uracil Phosphoribosyltransferase, Mutant C128v, Bound To Product Uridine-1-Monophosphate (Ump) >GP|5107697|pdb|1UPU|C Chain C, Structure Of The Uracil Phosphoribosyltransferase, Mut-TRUNCATED-  
At5g34581	chr5:012920366	0.0	W/12920366-12920461,12920629-12921018	AT5G34581.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 215 Blast hits to 195 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 127; Fungi - 11; Plants - 7; Viruses - 29; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT5G34581.1p  transcript_id AT5G34581.1  protein_id AT5G34581.1p  transcript_id AT5G34581.1  
At5g34602	chr5:012921297	0.0	W/12921297-12923057	AT5G34602.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 6.3e-71 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At5g34623	chr5:012928508	0.0	C/12928508-12933349	AT5G34623.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to putative transposon protein  
At5g34644	chr5:012934141	0.0	C/12934141-12935436	AT5G34644.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.1e-50 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g34665	chr5:012935517	0.0	W/12935517-12940229	AT5G34665.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.0e-62 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g34686	chr5:012940776	0.0	W/12940776-12941933	AT5G34686.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to putative myosin-like protein  
At5g34696	chr5:012942903	0.0	C/12942903-12944561	AT5G34696.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 4.6e-71 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At5g34707	chr5:012946017	0.0	C/12946017-12947465	AT5G34707.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 5.6e-142 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g34728	chr5:012948175	0.0	C/12948175-12950352	AT5G34728.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to putative myosin-like protein  
At5g34749	chr5:012951062	0.0	W/12951062-12952393	AT5G34749.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to putative Athila retroelement ORF1 protein  
At5g34770	chr5:012955720	0.0	W/12955720-12960171	AT5G34770.1  mRNA_TE_gene  pseudo  gene_syn T3J11.30, T3J11_30  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 3.2e-131 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays)  
At5g34780	chr5:012963847	0.0	C/12963847-12963892,12963633-12963709,12963423-12963534,12963187-12963326,12962911-12963096,12962520-12962825,12962177-12962264,12961682-12961824	AT5G34780.1  CDS  gene_syn T3J11.40, T3J11_40  function Putative ketopantoate reductase (KPR). This enzyme is speculated to be the missing enzyme in the biosynthesis of pantothenate.  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||ISS  go_process pantothenate biosynthetic process|GO:0015940|14675432|TAS  go_function 2-dehydropantoate 2-reductase activity|GO:0008677|14675432|TAS  go_function oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor|GO:0016624||ISS  product dehydrogenase E1 component family protein  note dehydrogenase E1 component family protein; FUNCTIONS IN: oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 2-dehydropantoate 2-reductase activity; INVOLVED IN: pantothenate biosynthetic process, metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Dehydrogenase, E1 component (InterPro:IPR001017); BEST Arabidopsis thaliana protein match is: 2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative (TAIR:AT1G21400.1); Has 5362 Blast hits to 5360 proteins in 1001 species: Archae - 46; Bacteria - 2782; Metazoa - 432; Fungi - 153; Plants - 123; Viruses - 0; Other Eukaryotes - 1826 (source: NCBI BLink).  protein_id AT5G34780.1p  transcript_id AT5G34780.1  protein_id AT5G34780.1p  transcript_id AT5G34780.1  
At5g34790	chr5:012966080	0.0	W/12966080-12968155	AT5G34790.1  mRNA_TE_gene  pseudo  gene_syn T3J11.50, T3J11_50  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 2.9e-11 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At5g34795	chr5:012969406	0.0	W/12969406-12970836	AT5G34795.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At5g34800	chr5:012971144	0.0	W/12971144-12973180	AT5G34800.1  mRNA_TE_gene  pseudo  gene_syn T3J11.60, T3J11_60  note Transposable element gene, pseudogene, hypothetical protein, predicted proteins - Arabidopsis thaliana  
At5g34810	chr5:012974776	0.0	W/12974776-12975438	AT5G34810.1  mRNA_TE_gene  pseudo  gene_syn T3J11.70, T3J11_70  note Transposable element gene, pseudogene, hypothetical protein, predicted proteins - Arabidopsis thaliana  
At5g34820	chr5:012976650	0.0	C/12976650-12977309	AT5G34820.1  mRNA_TE_gene  pseudo  gene_syn T3J11.80, T3J11_80  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G20770.1); similar to hypothetical protein 40.t00047 [Brassica oleracea] (GB:ABD65162.1)  
At5g34825	chr5:012979612	0.0	C/12979612-12981477	AT5G34825.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 4.7e-76 P-value blast match to Q9ZQM3 /24-192 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At5g34830	chr5:012981645	0.0	W/12981645-12981701,12981830-12981842,12981934-12982040,12982207-12982497	AT5G34830.1  CDS  gene_syn T3J11.1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, sperm cell, embryo; EXPRESSED DURING: D bilateral stage; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G34830.1p  transcript_id AT5G34830.1  protein_id AT5G34830.1p  transcript_id AT5G34830.1  
At5g34829	chr5:012982671	0.0	C/12982671-12982889	AT5G34829.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G34829.1p  transcript_id AT5G34829.1  protein_id AT5G34829.1p  transcript_id AT5G34829.1  
At5g34831	chr5:012983242	0.0	W/12983242-12984120	AT5G34831.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein, similar to contains similarity to Drosophila suppressor of sable protein (GB:M57889)  
At5g34832	chr5:012984740	0.0	W/12984740-12985360	AT5G34832.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein, similar to contains similarity to Drosophila suppressor of sable protein (GB:M57889)  
At5g34833	chr5:012985525	0.0	C/12985525-12991092	AT5G34833.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 4.7e-165 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At5g34834	chr5:012993229	0.0	W/12993229-12995709	AT5G34834.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 8.8e-76 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g34835	chr5:012996228	0.0	W/12996228-12997214	AT5G34835.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g34836	chr5:012998469	0.0	W/12998469-13001189	AT5G34836.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.6e-287 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g34837	chr5:013005694	0.0	W/13005694-13006653	AT5G34837.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to Hypothetical protein, similar to myb family protein; blastp match of 30% identity and 2.2e-18 P-value to GP|19881681|gb|AAM01082.1|AC092748_20|AC092748 Hypothetical protein {Oryza sativa}  
At5g34838	chr5:013008218	0.0	W/13008218-13009492	AT5G34838.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15310.1); similar to hypothetical protein 24.t00017 [Brassica oleracea] (GB:ABD64939.1); contains InterPro domain Protein of unknown function DUF635; (InterPro:IPR006912); contains InterPro domain Bacterial adhesion; (InterPro:IPR008966)  
At5g34839	chr5:013018225	0.0	W/13018225-13018805	AT5G34839.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.4e-09 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g34841	chr5:013020822	0.0	W/13020822-13022144	AT5G34841.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 0.00011 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g34842	chr5:013023684	0.0	W/13023684-13026784	AT5G34842.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.5e-209 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g34843	chr5:013027320	0.0	W/13027320-13029224	AT5G34843.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to see GB:AF077408  
At5g34844	chr5:013032719	0.0	W/13032719-13035262	AT5G34844.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.1e-166 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g34845	chr5:013036202	0.0	W/13036202-13038013	AT5G34845.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to putative transposon protein  
At5g34846	chr5:013041710	0.0	C/13041710-13043929	AT5G34846.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.2e-44 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g34847	chr5:013046903	0.0	W/13046903-13047433	AT5G34847.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.0e-27 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g34840	chr5:013054469	0.0	C/13054469-13055728	AT5G34840.1  mRNA_TE_gene  pseudo  gene_syn F11P10.20, F11P10_20  note Transposable element gene, Mutator-like transposase family, has a 2.1e-07 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At5g34848	chr5:013055898	0.0	W/13055898-13056920	AT5G34848.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At5g34869	chr5:013061195	0.0	W/13061195-13062010	AT5G34869.1  CDS  product unknown protein  note unknown protein; Has 13 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G34869.1p  transcript_id AT5G34869.1  protein_id AT5G34869.1p  transcript_id AT5G34869.1  
At5g34849	chr5:013070534	0.0	W/13070534-13074757	AT5G34849.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.5e-166 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At5g34871	chr5:013085037	0.0	W/13085037-13086565	AT5G34871.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G34871.1  
At5g34851	chr5:013086817	0.0	W/13086817-13091997	AT5G34851.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At5g34828	chr5:013094069	0.0	C/13094069-13094344	AT5G34828.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G58242.1); Has 42 Blast hits to 42 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G34828.1p  transcript_id AT5G34828.1  protein_id AT5G34828.1p  transcript_id AT5G34828.1  
At5g34852	chr5:013101334	0.0	C/13101334-13101579	AT5G34852.1  pseudogenic_transcript  pseudo  note maturase, pseudogene, similar to maturase {Saururus chinensis}; blastp match of 89% identity and 5.2e-15 P-value to GP|18028624|gb|AAL56072.1||AF332106 maturase {Saururus chinensis}  
At5g34853	chr5:013103678	0.0	W/13103678-13107090	AT5G34853.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 2.7e-48 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At5g34850	chr5:013110849	0.0	C/13110849-13111217,13110665-13110776,13110300-13110526,13109814-13109952,13109427-13109647,13109219-13109340,13108625-13108786,13108475-13108550	AT5G34850.1  CDS  gene_syn ATPAP26, PAP26, PURPLE ACID PHOSPHATASE 26, T5E15.10, T5E15_10  gene PAP26  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process biological_process|GO:0008150||ND  go_function acid phosphatase activity|GO:0003993|16244908|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PAP26 (PURPLE ACID PHOSPHATASE 26); acid phosphatase/ protein serine/threonine phosphatase  note PURPLE ACID PHOSPHATASE 26 (PAP26); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Purple acid phosphatase, N-terminal (InterPro:IPR015914), Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: PAP12 (PURPLE ACID PHOSPHATASE 12); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT2G27190.1); Has 1142 Blast hits to 1135 proteins in 256 species: Archae - 2; Bacteria - 306; Metazoa - 171; Fungi - 62; Plants - 442; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT5G34850.1p  transcript_id AT5G34850.1  protein_id AT5G34850.1p  transcript_id AT5G34850.1  
At5g34854	chr5:013115071	0.0	W/13115071-13117684	AT5G34854.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.3e-96 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At5g34855	chr5:013120188	0.0	C/13120188-13121596	AT5G34855.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G38380.1); similar to hypothetical protein 26.t00034 [Brassica oleracea] (GB:ABD65011.1); contains domain RNA polymerase subunit RPB10 (SSF46924)  
At5g34856	chr5:013121990	0.0	C/13121990-13128286	AT5G34856.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 8.5e-111 P-value blast match to gb|AAL06419.1|AF378075_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)  
At5g34857	chr5:013128440	0.0	W/13128440-13129606	AT5G34857.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 3.7e-70 P-value blast match to gb|AAO73521.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At5g34858	chr5:013134876	0.0	C/13134876-13136513	AT5G34858.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to contains similarity to Arabidopsis thaliana hypothetical protein (GB:AC004483)  
At5g34859	chr5:013137439	0.0	W/13137439-13137777	AT5G34859.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 7.6e-08 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At5g34861	chr5:013141757	0.0	W/13141757-13142246	AT5G34861.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 4.8e-10 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At5g34862	chr5:013143974	0.0	C/13143974-13147606	AT5G34862.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 3.4e-78 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g34863	chr5:013148459	0.0	W/13148459-13152499	AT5G34863.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.6e-173 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At5g34864	chr5:013158220	0.0	W/13158220-13161939	AT5G34864.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.3e-143 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)  
At5g34865	chr5:013163922	0.0	W/13163922-13165382	AT5G34865.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 7.5e-16 P-value blast match to GB:226407 retrotransposon del1-46 (Gypsy_Ty3-element) (Lilium henryi)  
At5g34866	chr5:013167719	0.0	W/13167719-13169344	AT5G34866.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 5.8e-39 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g34867	chr5:013171123	0.0	W/13171123-13176186	AT5G34867.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 2.7e-279 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At5g34868	chr5:013177600	0.0	C/13177600-13180050	AT5G34868.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 1.1e-131 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At5g34860	chr5:013182692	0.0	C/13182692-13184771	AT5G34860.1  mRNA_TE_gene  pseudo  gene_syn T2L5.10, T2L5_10  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G06908.1); similar to putative transposon protein [Oryza sativa (japonica cultivar-group)] (GB:AAR88574.1); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637)  
At5g34870	chr5:013185521	0.0	W/13185521-13185718,13185793-13186464,13186543-13186844,13186898-13186922,13187501-13187575,13187668-13187946	AT5G34870.1  CDS  gene_syn T2L5.20, T2L5_20  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc knuckle (CCHC-type) family protein  note zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G31950.1); Has 8 Blast hits to 8 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G34870.1p  transcript_id AT5G34870.1  protein_id AT5G34870.1p  transcript_id AT5G34870.1  
At5g34880	chr5:013193400	0.0	W/13193400-13195209	AT5G34880.1  mRNA_TE_gene  pseudo  gene_syn T2L5.30, T2L5_30  note Transposable element gene, gypsy-like retrotransposon family, has a 2.2e-11 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At5g34882	chr5:013195705	0.0	W/13195705-13196052	AT5G34882.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G34887.1); Has 36 Blast hits to 36 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G34882.1p  transcript_id AT5G34882.1  protein_id AT5G34882.1p  transcript_id AT5G34882.1  
At5g34881	chr5:013197652	0.0	W/13197652-13197999	AT5G34881.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G34887.1); Has 36 Blast hits to 36 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G34881.1p  transcript_id AT5G34881.1  protein_id AT5G34881.1p  transcript_id AT5G34881.1  
At5g34883	chr5:013199598	0.0	W/13199598-13199945	AT5G34883.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G34885.1); Has 42 Blast hits to 42 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G34883.1p  transcript_id AT5G34883.1  protein_id AT5G34883.1p  transcript_id AT5G34883.1  
At5g34885	chr5:013201546	0.0	W/13201546-13201893	AT5G34885.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G34883.1); Has 44 Blast hits to 44 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G34885.1p  transcript_id AT5G34885.1  protein_id AT5G34885.1p  transcript_id AT5G34885.1  
At5g34887	chr5:013203494	0.0	W/13203494-13203841	AT5G34887.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G34905.1); Has 40 Blast hits to 40 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G34887.1p  transcript_id AT5G34887.1  protein_id AT5G34887.1p  transcript_id AT5G34887.1  
At5g34890	chr5:013206340	0.0	W/13206340-13208918	AT5G34890.1  mRNA_TE_gene  pseudo  gene_syn T2L5.40, T2L5_40  note Transposable element gene, Mutator-like transposase family, has a 1.4e-81 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At5g34895	chr5:013209814	0.0	C/13209814-13211899	AT5G34895.1  mRNA_TE_gene  pseudo  gene_syn T2L5.4, T2L5_4  note Transposable element gene, similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT1G32830.1); similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT3G30450.1); similar to Agenet domain containing protein [Brassica oleracea] (GB:ABD65016.1); contains InterPro domain Protein of unknown function DUF1299; (InterPro:IPR010725); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623)  
At5g34900	chr5:013214696	0.0	C/13214696-13219362	AT5G34900.1  mRNA_TE_gene  pseudo  gene_syn T2L5.5, T2L5_5  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G47260.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G14130.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G04010.1); similar to hypothetical protein 26.t00072 [Brassica oleracea] (GB:ABD65017.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At5g34903	chr5:013221190	0.0	W/13221190-13221537	AT5G34903.1  pseudogenic_transcript  pseudo  function Encodes a ECA1 gametogenesis related family protein [pseudogene]  
At5g34905	chr5:013223133	0.0	W/13223133-13223480	AT5G34905.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G34887.1); Has 36 Blast hits to 36 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G34905.1p  transcript_id AT5G34905.1  protein_id AT5G34905.1p  transcript_id AT5G34905.1  
At5g34908	chr5:013225067	0.0	W/13225067-13225315	AT5G34908.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G34905.1); Has 36 Blast hits to 36 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G34908.1p  transcript_id AT5G34908.1  protein_id AT5G34908.1p  transcript_id AT5G34908.1  
At5g34910	chr5:013226058	0.0	W/13226058-13226321	AT5G34910.1  pseudogenic_transcript  pseudo  gene_syn T2L5.70, T2L5_70  function pseudogene of hypothetical protein  
At5g34920	chr5:013227195	0.0	W/13227195-13227825	AT5G34920.1  mRNA_TE_gene  pseudo  gene_syn T2L5.80, T2L5_80  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 3.2e-40 P-value blast match to At5g59620.1/14-257 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At5g34925	chr5:013228857	0.0	C/13228857-13229660	AT5G34925.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 7.3e-38 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At5g34930	chr5:013233391	0.0	W/13233391-13233402,13233519-13234528,13234622-13235522	AT5G34930.1  CDS  gene_syn T2L5.1  go_process tyrosine biosynthetic process|GO:0006571||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function prephenate dehydrogenase (NADP+) activity|GO:0004665||IEA  go_function binding|GO:0005488||IEA  go_process tyrosine biosynthetic process|GO:0006571||ISS  go_function prephenate dehydrogenase (NADP+) activity|GO:0004665||ISS  product arogenate dehydrogenase  note arogenate dehydrogenase; FUNCTIONS IN: binding, prephenate dehydrogenase (NADP+) activity, catalytic activity; INVOLVED IN: tyrosine biosynthetic process, metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Prephenate dehydrogenase (InterPro:IPR003099), NADP oxidoreductase, coenzyme F420-dependent (InterPro:IPR004455), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: prephenate dehydrogenase family protein (TAIR:AT1G15710.1); Has 1279 Blast hits to 999 proteins in 361 species: Archae - 105; Bacteria - 648; Metazoa - 21; Fungi - 51; Plants - 110; Viruses - 0; Other Eukaryotes - 344 (source: NCBI BLink).  protein_id AT5G34930.1p  transcript_id AT5G34930.1  protein_id AT5G34930.1p  transcript_id AT5G34930.1  
At5g34940	chr5:013237756	0.0	C/13237756-13237799,13237393-13237541,13237072-13237302,13236787-13236976,13236570-13236695,13236362-13236461,13235912-13236277	AT5G34940.1  CDS  gene_syn Arabidopsis thaliana glucuronidase 3, AtGUS3, T2L5.6  gene AtGUS3  function The protein is predicted (WoLF PSORT program) to be membrane-associated.  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process biological_process|GO:0008150||ND  go_function beta-glucuronidase activity|GO:0004566|17498920|ISS  go_function beta-glucuronidase activity|GO:0004566||ISS  product AtGUS3 (Arabidopsis thaliana glucuronidase 3); beta-glucuronidase  note Arabidopsis thaliana glucuronidase 3 (AtGUS3); FUNCTIONS IN: beta-glucuronidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase family 79, N-terminal (InterPro:IPR005199); BEST Arabidopsis thaliana protein match is: AtGUS1 (Arabidopsis thaliana glucuronidase 1); beta-glucuronidase (TAIR:AT5G61250.2); Has 239 Blast hits to 237 proteins in 46 species: Archae - 0; Bacteria - 16; Metazoa - 127; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT5G34940.1p  transcript_id AT5G34940.1  protein_id AT5G34940.1p  transcript_id AT5G34940.1  
At5g34940	chr5:013238491	0.0	C/13238491-13238718,13237756-13237976,13237393-13237541,13237072-13237302,13236787-13236976,13236566-13236695	AT5G34940.3  CDS  gene_syn Arabidopsis thaliana glucuronidase 3, AtGUS3, T2L5.6  gene AtGUS3  function The protein is predicted (WoLF PSORT program) to be membrane-associated.  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process biological_process|GO:0008150||ND  go_function beta-glucuronidase activity|GO:0004566|17498920|ISS  go_function beta-glucuronidase activity|GO:0004566||ISS  product AtGUS3 (Arabidopsis thaliana glucuronidase 3); beta-glucuronidase  note Arabidopsis thaliana glucuronidase 3 (AtGUS3); FUNCTIONS IN: beta-glucuronidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase family 79, N-terminal (InterPro:IPR005199); BEST Arabidopsis thaliana protein match is: AtGUS1 (Arabidopsis thaliana glucuronidase 1); beta-glucuronidase (TAIR:AT5G61250.2); Has 228 Blast hits to 225 proteins in 45 species: Archae - 0; Bacteria - 14; Metazoa - 124; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT5G34940.3p  transcript_id AT5G34940.3  protein_id AT5G34940.3p  transcript_id AT5G34940.3  
At5g34940	chr5:013238491	0.0	C/13238491-13238718,13238016-13238052,13237756-13237939,13237393-13237541,13237072-13237302,13236787-13236976,13236570-13236695,13236362-13236461,13235912-13236277	AT5G34940.2  CDS  gene_syn Arabidopsis thaliana glucuronidase 3, AtGUS3, T2L5.6  gene AtGUS3  function The protein is predicted (WoLF PSORT program) to be membrane-associated.  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process biological_process|GO:0008150||ND  go_function beta-glucuronidase activity|GO:0004566|17498920|ISS  go_function beta-glucuronidase activity|GO:0004566||ISS  product AtGUS3 (Arabidopsis thaliana glucuronidase 3); beta-glucuronidase  note Arabidopsis thaliana glucuronidase 3 (AtGUS3); FUNCTIONS IN: beta-glucuronidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase family 79, N-terminal (InterPro:IPR005199); BEST Arabidopsis thaliana protein match is: AtGUS1 (Arabidopsis thaliana glucuronidase 1); beta-glucuronidase (TAIR:AT5G61250.2); Has 243 Blast hits to 240 proteins in 46 species: Archae - 0; Bacteria - 16; Metazoa - 129; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT5G34940.2p  transcript_id AT5G34940.2  protein_id AT5G34940.2p  transcript_id AT5G34940.2  
At5g34945	chr5:013241999	0.0	C/13241999-13242745	AT5G34945.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein, similar to F12A21.9  
At5g34950	chr5:013244557	0.0	C/13244557-13245839	AT5G34950.1  mRNA_TE_gene  pseudo  gene_syn T2L5.110  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05084.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At5g34960	chr5:013246527	0.0	C/13246527-13251225	AT5G34960.1  mRNA_TE_gene  pseudo  gene_syn T2L5.8, T2L5_8  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14450.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13250.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35920.1); similar to hypothetical protein 31.t00030 [Brassica oleracea] (GB:ABD65117.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Protein of unknown function DUF889, eukaryote; (InterPro:IPR010285)  
At5g34965	chr5:013253349	0.0	C/13253349-13258229	AT5G34965.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At5g34970	chr5:013259324	0.0	W/13259324-13261366	AT5G34970.1  mRNA_TE_gene  pseudo  gene_syn T2L5.130, T2L5_130  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G43390.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G27780.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G36860.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1)  
At5g34980	chr5:013262204	0.0	W/13262204-13262687	AT5G34980.1  mRNA_TE_gene  pseudo  gene_syn MGG23.7  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32312.1)  
At5g34985	chr5:013264941	0.0	C/13264941-13270577	AT5G34985.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.8e-266 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g34990	chr5:013271933	0.0	W/13271933-13274842	AT5G34990.1  mRNA_TE_gene  pseudo  gene_syn T9E19.1, T9E19_1  note Transposable element gene, pseudogene, Ulp1 protease family, contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain  
At5g35000	chr5:013275208	0.0	W/13275208-13275881	AT5G35000.1  mRNA_TE_gene  pseudo  gene_syn MSK10.4, MSK10_4  note Transposable element gene, pseudogene, hypothetical protein, similar to At5g36850, At1g27780, At2g05560, At3g42730, At1g52020, At2g14770  
At5g35010	chr5:013276671	0.0	W/13276671-13277363	AT5G35010.1  mRNA_TE_gene  pseudo  gene_syn MSK10.5, MSK10_5  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14774.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05564.1); similar to hypothetical protein 40.t00047 [Brassica oleracea] (GB:ABD65162.1)  
At5g35020	chr5:013278167	0.0	W/13278167-13278445	AT5G35020.1  mRNA_TE_gene  pseudo  gene_syn MSK10.6, MSK10_6  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05300.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G32394.1)  
At5g35021	chr5:013278855	0.0	C/13278855-13279796	AT5G35021.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g35023	chr5:013280387	0.0	C/13280387-13283296	AT5G35023.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 9.4e-88 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At5g35025	chr5:013285645	0.0	W/13285645-13289722	AT5G35025.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, Ulp1 protease family, contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain  
At5g35030	chr5:013291122	0.0	C/13291122-13291848	AT5G35030.1  mRNA_TE_gene  pseudo  gene_syn MSK10.9, MSK10_9  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30470.1); contains InterPro domain Protein of unknown function DUF730; (InterPro:IPR007989)  
At5g35035	chr5:013293160	0.0	C/13293160-13293678	AT5G35035.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G24910.1)  
At5g35040	chr5:013294026	0.0	W/13294026-13295042	AT5G35040.1  mRNA_TE_gene  pseudo  gene_syn MSK10.11  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07690.1); similar to Fgenesh protein 114 [Beta vulgaris] (GB:ABD83325.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At5g35045	chr5:013295472	0.0	C/13295472-13298304	AT5G35045.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 2.5e-66 P-value blast match to O22273 /233-373 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At5g35046	chr5:013301420	0.0	W/13301420-13304806	AT5G35046.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.3e-226 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g35048	chr5:013305469	0.0	W/13305469-13306464	AT5G35048.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g35050	chr5:013311225	0.0	C/13311225-13311854	AT5G35050.1  CDS  gene_syn MSK10.16, MSK10_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1985 (InterPro:IPR015410).  protein_id AT5G35050.1p  transcript_id AT5G35050.1  protein_id AT5G35050.1p  transcript_id AT5G35050.1  
At5g35052	chr5:013315155	0.0	C/13315155-13318790	AT5G35052.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 3.1e-94 P-value blast match to GB:AAD12998 pol polyprotein (Ty1_Copia-element) (Zea mays)  
At5g35057	chr5:013320517	0.0	C/13320517-13326651	AT5G35057.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 8.7e-292 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g35061	chr5:013327814	0.0	C/13327814-13328383	AT5G35061.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g35065	chr5:013328413	0.0	C/13328413-13330548	AT5G35065.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 5.3e-33 P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element)  
At5g35066	chr5:013332537	0.0	C/13332537-13332650	AT5G35066.1  CDS  product unknown protein  note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48953.1); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G35066.1p  transcript_id AT5G35066.1  protein_id AT5G35066.1p  transcript_id AT5G35066.1  
At5g35069	chr5:013336475	0.0	W/13336475-13336657	AT5G35069.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G35069.1p  transcript_id AT5G35069.1  protein_id AT5G35069.1p  transcript_id AT5G35069.1  
At5g35070	chr5:013336981	0.0	C/13336981-13338990	AT5G35070.2  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At5g35073	chr5:013340657	0.0	C/13340657-13341994	AT5G35073.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 4.3e-39 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At5g35076	chr5:013348106	0.0	W/13348106-13353283	AT5G35076.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.4e-45 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)  
At5g35080	chr5:013356632	0.0	C/13356632-13356725,13356478-13356554,13355552-13355755,13355400-13355474,13355213-13355307,13355065-13355131,13354881-13354987,13354552-13354681	AT5G35080.1  CDS  gene_syn F7N22.4, F7N22_4  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_process biological_process|GO:0008150||ND  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-6-phosphate receptor, binding (InterPro:IPR009011), Glucosidase II beta subunit-like (InterPro:IPR012913); Has 480 Blast hits to 361 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 316; Fungi - 98; Plants - 25; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT5G35080.1p  transcript_id AT5G35080.1  protein_id AT5G35080.1p  transcript_id AT5G35080.1  
At5g35090	chr5:013358536	0.0	W/13358536-13359015	AT5G35090.1  CDS  gene_syn F7N22.40, F7N22_40  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; Has 42 Blast hits to 42 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G35090.1p  transcript_id AT5G35090.1  protein_id AT5G35090.1p  transcript_id AT5G35090.1  
At5g35100	chr5:013360741	0.0	C/13360741-13361377,13360459-13360667	AT5G35100.1  CDS  gene_syn F7N22.3, F7N22_3  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||IEA  go_process protein folding|GO:0006457||ISS  go_process peptidyl-cysteine S-nitrosylation|GO:0018119|18297659|IDA  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product peptidyl-prolyl cis-trans isomerase  note peptidyl-prolyl cis-trans isomerase; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, peptidyl-cysteine S-nitrosylation; LOCATED IN: thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative (TAIR:AT4G34960.1); Has 3274 Blast hits to 3274 proteins in 532 species: Archae - 3; Bacteria - 418; Metazoa - 1321; Fungi - 615; Plants - 473; Viruses - 0; Other Eukaryotes - 444 (source: NCBI BLink).  protein_id AT5G35100.1p  transcript_id AT5G35100.1  protein_id AT5G35100.1p  transcript_id AT5G35100.1  
At5g35100	chr5:013360976	0.0	C/13360976-13361377,13360741-13360867,13360459-13360667	AT5G35100.2  CDS  gene_syn F7N22.3, F7N22_3  go_component chloroplast|GO:0009507|18431481|IDA  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||IEA  go_process protein folding|GO:0006457||ISS  go_process peptidyl-cysteine S-nitrosylation|GO:0018119|18297659|IDA  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product peptidyl-prolyl cis-trans isomerase  note peptidyl-prolyl cis-trans isomerase; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, peptidyl-cysteine S-nitrosylation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: CYP5 (CYCLOPHILIN 5); peptidyl-prolyl cis-trans isomerase (TAIR:AT2G29960.2); Has 2919 Blast hits to 2919 proteins in 493 species: Archae - 5; Bacteria - 320; Metazoa - 1289; Fungi - 524; Plants - 443; Viruses - 0; Other Eukaryotes - 338 (source: NCBI BLink).  protein_id AT5G35100.2p  transcript_id AT5G35100.2  protein_id AT5G35100.2p  transcript_id AT5G35100.2  
At5g35110	chr5:013363937	0.0	C/13363937-13364275	AT5G35110.1  CDS  gene_syn F7N22.20, F7N22_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46490.1); Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G35110.1p  transcript_id AT5G35110.1  protein_id AT5G35110.1p  transcript_id AT5G35110.1  
At5g35111	chr5:013366072	0.0	C/13366072-13367241	AT5G35111.1  pseudogenic_transcript  pseudo  note pseudogene, similar to peroxidase 6, blastp match of 72% identity and 1.1e-17 P-value to GP|5002334|gb|AAD37423.1|AF149281_1|AF149281 peroxidase 6 {Phaseolus vulgaris}  
At5g35113	chr5:013373579	0.0	C/13373579-13378239	AT5G35113.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 2.8e-276 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At5g35116	chr5:013379836	0.0	W/13379836-13381935	AT5G35116.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 2.7e-85 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At5g35118	chr5:013384737	0.0	C/13384737-13385442	AT5G35118.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 5.5e-10 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)  
At5g35120	chr5:013386852	0.0	C/13386852-13387175	AT5G35120.1  CDS  gene_syn F7N22.1, F7N22_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G59930.1); Has 199 Blast hits to 199 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 199; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G35120.1p  transcript_id AT5G35120.1  protein_id AT5G35120.1p  transcript_id AT5G35120.1  
At5g35130	chr5:013390729	0.0	C/13390729-13392273	AT5G35130.1  mRNA_TE_gene  pseudo  gene_syn T25C13.10, T25C13_10  note Transposable element gene, pseudogene, similar to putative helicase, predicted proteins from different species; blastp match of 44% identity and 3.7e-76 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)}  
At5g35140	chr5:013394308	0.0	W/13394308-13396013	AT5G35140.1  mRNA_TE_gene  pseudo  gene_syn T25C13.20, T25C13_20  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 1.4e-23 P-value blast match to At1g36190.1/92-340 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At5g35142	chr5:013397089	0.0	W/13397089-13399881	AT5G35142.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 1.5e-102 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g35145	chr5:013400552	0.0	W/13400552-13402834	AT5G35145.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, PF03078: ATHILA ORF-1 family  
At5g35146	chr5:013404008	0.0	W/13404008-13404991	AT5G35146.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g35148	chr5:013405610	0.0	W/13405610-13407178	AT5G35148.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.5e-89 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g35150	chr5:013410611	0.0	W/13410611-13412704	AT5G35150.1  mRNA_TE_gene  pseudo  gene_syn T25C13.30, T25C13_30  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 1.6e-26 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At5g35160	chr5:013414945	0.0	W/13414945-13415073,13415158-13416921	AT5G35160.1  CDS  gene_syn T25C13.40, T25C13_40  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component integral to membrane|GO:0016021||ISS  product unknown protein  note LOCATED IN: integral to membrane, Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12650.1); Has 1053 Blast hits to 1004 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 478; Fungi - 143; Plants - 250; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink).  protein_id AT5G35160.1p  transcript_id AT5G35160.1  protein_id AT5G35160.1p  transcript_id AT5G35160.1  
At5g35170	chr5:013419278	0.0	W/13419278-13419490,13419648-13419740,13420124-13420252,13420322-13420456,13420571-13420717,13420798-13420872,13420976-13421063,13421489-13421508,13421600-13421728,13421838-13421873,13421959-13422039,13422124-13422262,13422511-13422590,13422675-13422740,13422836-13422865,13422939-13423048,13423128-13423265,13423348-13423377,13423455-13423482	AT5G35170.1  CDS  gene_syn T25C13.50, T25C13_50  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_process anaerobic respiration|GO:0009061||IEA  go_process nucleotide metabolic process|GO:0009117||IEA  go_function adenylate kinase activity|GO:0004017||IEA  go_function ATP binding|GO:0005524||IEA  go_function phosphotransferase activity, phosphate group as acceptor|GO:0016776||IEA  go_function nucleotide kinase activity|GO:0019201||IEA  go_function nucleobase, nucleoside, nucleotide kinase activity|GO:0019205||IEA  go_function nucleotide kinase activity|GO:0019201||ISS  product adenylate kinase family protein  note adenylate kinase family protein; FUNCTIONS IN: nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, phosphotransferase activity, phosphate group as acceptor, adenylate kinase activity, ATP binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adenylate kinase, zinc-finger lid region (InterPro:IPR007862), Adenylate kinase, subfamily (InterPro:IPR006259), Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: AMK2 (Adenosine monophosphate kinase); ATP binding / adenylate kinase/ nucleobase, nucleoside, nucleotide kinase/ nucleotide kinase/ phosphotransferase, phosphate group as acceptor (TAIR:AT5G47840.1); Has 8838 Blast hits to 8698 proteins in 1852 species: Archae - 61; Bacteria - 4535; Metazoa - 1101; Fungi - 291; Plants - 261; Viruses - 0; Other Eukaryotes - 2589 (source: NCBI BLink).  protein_id AT5G35170.1p  transcript_id AT5G35170.1  protein_id AT5G35170.1p  transcript_id AT5G35170.1  
At5g35170	chr5:013419278	0.0	W/13419278-13419490,13419648-13419740,13420124-13420252,13420322-13420456,13420571-13420717,13420798-13420872,13420976-13421063,13421489-13421508,13421600-13421728,13421838-13421873,13421959-13422039,13422124-13422262,13422511-13422590,13422675-13422740,13422836-13422865,13422939-13423048,13423128-13423265,13423348-13423381	AT5G35170.2  CDS  gene_syn T25C13.50, T25C13_50  go_component chloroplast|GO:0009507|18431481|IDA  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_function adenylate kinase activity|GO:0004017||IEA  go_function ATP binding|GO:0005524||IEA  go_function phosphotransferase activity, phosphate group as acceptor|GO:0016776||IEA  go_function nucleotide kinase activity|GO:0019201||IEA  go_function nucleobase, nucleoside, nucleotide kinase activity|GO:0019205||IEA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_function nucleotide kinase activity|GO:0019201||ISS  product adenylate kinase family protein  note adenylate kinase family protein; FUNCTIONS IN: nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, adenylate kinase activity, phosphotransferase activity, phosphate group as acceptor, ATP binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adenylate kinase, zinc-finger lid region (InterPro:IPR007862), Adenylate kinase, subfamily (InterPro:IPR006259), Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: AMK2 (Adenosine monophosphate kinase); ATP binding / adenylate kinase/ nucleobase, nucleoside, nucleotide kinase/ nucleotide kinase/ phosphotransferase, phosphate group as acceptor (TAIR:AT5G47840.1); Has 8837 Blast hits to 8697 proteins in 1852 species: Archae - 61; Bacteria - 4535; Metazoa - 1101; Fungi - 291; Plants - 261; Viruses - 0; Other Eukaryotes - 2588 (source: NCBI BLink).  protein_id AT5G35170.2p  transcript_id AT5G35170.2  protein_id AT5G35170.2p  transcript_id AT5G35170.2  
At5g35180	chr5:013424538	0.0	W/13424538-13424843,13424966-13425040,13425139-13425192,13425404-13425469,13425638-13425696,13425917-13425993,13426481-13426609,13426699-13426708,13426803-13426831,13426943-13426977,13427333-13427433,13427499-13427594,13427832-13427896,13428504-13428575,13428703-13428762,13429002-13429172,13429521-13429723,13430158-13430224,13430626-13430801,13431120-13431221,13431485-13431532,13431893-13432036,13432116-13432211,13432403-13432504,13432607-13432693,13432782-13432787	AT5G35180.4  CDS  gene_syn T25C13.60, T25C13_60  go_process signal transduction|GO:0007165|15358268|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product phosphoinositide binding  note phosphoinositide binding; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769), Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: EDR2; lipid binding (TAIR:AT4G19040.1).  protein_id AT5G35180.4p  transcript_id AT5G35180.4  protein_id AT5G35180.4p  transcript_id AT5G35180.4  
At5g35180	chr5:013424538	0.0	W/13424538-13424843,13424966-13425040,13425139-13425192,13425404-13425469,13425638-13425696,13425917-13425993,13426481-13426609,13426943-13426977,13427333-13427433,13427499-13427594,13427832-13427896,13428504-13428575,13429002-13429172,13429521-13429723,13430158-13430224,13430626-13430801,13431120-13431221,13431485-13431532,13431893-13432036,13432116-13432211,13432403-13432504,13432607-13432693,13432782-13432787	AT5G35180.1  CDS  gene_syn T25C13.60, T25C13_60  go_component plasma membrane|GO:0005886|17317660|IDA  go_process signal transduction|GO:0007165|15358268|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product phosphoinositide binding  note phosphoinositide binding; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769), Lipid-binding START (InterPro:IPR002913), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: EDR2; lipid binding (TAIR:AT4G19040.1); Has 215 Blast hits to 212 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 2; Plants - 188; Viruses - 2; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT5G35180.1p  transcript_id AT5G35180.1  protein_id AT5G35180.1p  transcript_id AT5G35180.1  
At5g35180	chr5:013424538	0.0	W/13424538-13424843,13424966-13425040,13425139-13425192,13425404-13425469,13425638-13425696,13425917-13425993,13426481-13426609,13426943-13426977,13427333-13427433,13427499-13427594,13427832-13427896,13428504-13428575,13429002-13429172,13429521-13429723,13430158-13430224,13430626-13430801,13431120-13431221,13431485-13431532,13431893-13432036,13432116-13432211,13432403-13432504,13432607-13432699	AT5G35180.2  CDS  gene_syn T25C13.60, T25C13_60  go_component plasma membrane|GO:0005886|17317660|IDA  go_process signal transduction|GO:0007165|15358268|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product phosphoinositide binding  note phosphoinositide binding; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769), Lipid-binding START (InterPro:IPR002913), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: EDR2; lipid binding (TAIR:AT4G19040.1); Has 215 Blast hits to 212 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 2; Plants - 188; Viruses - 2; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT5G35180.2p  transcript_id AT5G35180.2  protein_id AT5G35180.2p  transcript_id AT5G35180.2  
At5g35180	chr5:013424538	0.0	W/13424538-13424843,13424966-13425040,13425139-13425192,13425404-13425469,13425638-13425696,13425917-13425993,13426481-13426609,13426943-13426977,13427333-13427433,13427499-13427594,13427832-13427896,13428504-13428575,13429002-13429172,13429521-13429723,13430158-13430224,13430626-13430831	AT5G35180.3  CDS  gene_syn T25C13.60, T25C13_60  go_component plasma membrane|GO:0005886|17317660|IDA  go_process signal transduction|GO:0007165|15358268|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product phosphoinositide binding  note phosphoinositide binding; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769), Lipid-binding START (InterPro:IPR002913), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: EDR2; lipid binding (TAIR:AT4G19040.1); Has 97 Blast hits to 95 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 83; Viruses - 2; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G35180.3p  transcript_id AT5G35180.3  protein_id AT5G35180.3p  transcript_id AT5G35180.3  
At5g35190	chr5:013434181	0.0	W/13434181-13435167	AT5G35190.1  CDS  gene_syn T25C13.70, T25C13_70  go_component endomembrane system|GO:0012505||IEA  go_process plant-type cell wall organization|GO:0009664||IEA  go_function structural constituent of cell wall|GO:0005199||IEA  product proline-rich extensin-like family protein  note proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Extensin-like region (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: proline-rich extensin-like family protein (TAIR:AT4G08410.1); Has 77423 Blast hits to 27554 proteins in 1146 species: Archae - 176; Bacteria - 8307; Metazoa - 32610; Fungi - 12462; Plants - 11694; Viruses - 2105; Other Eukaryotes - 10069 (source: NCBI BLink).  protein_id AT5G35190.1p  transcript_id AT5G35190.1  protein_id AT5G35190.1p  transcript_id AT5G35190.1  
At5g35195	chr5:013449573	0.0	C/13449573-13449749	AT5G35195.1  CDS  function Encodes a defensin-like (DEFL) family protein.  product unknown protein  note Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G35195.1p  transcript_id AT5G35195.1  protein_id AT5G35195.1p  transcript_id AT5G35195.1  
At5g35200	chr5:013465480	0.0	C/13465480-13465581,13465342-13465411,13465133-13465230,13464775-13464916,13464587-13464687,13464417-13464500,13464252-13464302,13464094-13464159,13463951-13464016,13463778-13463858,13463619-13463696,13463301-13463444,13463136-13463214,13462919-13463031,13462463-13462822	AT5G35200.1  CDS  gene_syn T25C13.80, T25C13_80  go_component plasma membrane|GO:0005886|17317660|IDA  go_process clathrin coat assembly|GO:0048268||IEA  go_function phospholipid binding|GO:0005543||IEA  go_function phosphatidylinositol binding|GO:0005545||IEA  go_function clathrin binding|GO:0030276||IEA  go_function binding|GO:0005488||ISS  product epsin N-terminal homology (ENTH) domain-containing protein  note epsin N-terminal homology (ENTH) domain-containing protein; FUNCTIONS IN: phospholipid binding, clathrin binding, binding, phosphatidylinositol binding; INVOLVED IN: clathrin coat assembly; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942), Clathrin adaptor, phosphoinositide-binding, GAT-like (InterPro:IPR014712); BEST Arabidopsis thaliana protein match is: epsin N-terminal homology (ENTH) domain-containing protein (TAIR:AT2G01600.1); Has 641 Blast hits to 626 proteins in 133 species: Archae - 0; Bacteria - 2; Metazoa - 267; Fungi - 96; Plants - 234; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT5G35200.1p  transcript_id AT5G35200.1  protein_id AT5G35200.1p  transcript_id AT5G35200.1  
At5g35205	chr5:013466904	0.0	C/13466904-13471592	AT5G35205.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.1e-36 P-value blast match to GB:BAA20419 reverse transcriptase (LINE-element) (Mus musculus)  
At5g35207	chr5:013471730	0.0	C/13471730-13472482	AT5G35207.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to simiar to ribosomal protein, blastp match of 45% identity and 6.7e-47 P-value to GP|19571128|dbj|BAB86552.1||AP003566 simiar to ribosomal protein {Oryza sativa (japonica cultivar-group)}  
At5g35210	chr5:013481442	0.0	C/13481442-13482238,13480501-13481162,13479394-13480346,13478828-13479107,13478549-13478677,13478324-13478415,13477966-13478058,13477553-13477628,13477155-13477457,13476213-13477057	AT5G35210.2  CDS  gene_syn T25C13.90, T25C13_90  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product peptidase M50 family protein / sterol-regulatory element binding protein (SREBP) site 2 protease family protein  note peptidase M50 family protein / sterol-regulatory element binding protein (SREBP) site 2 protease family protein; FUNCTIONS IN: protein binding, DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast envelope; EXPRESSED IN: male gametophyte; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: DDT superfamily (InterPro:IPR018501), DDT family (InterPro:IPR004022), DDT subgroup (InterPro:IPR018500), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT5G22760.1); Has 2937 Blast hits to 2602 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 2098; Fungi - 246; Plants - 393; Viruses - 0; Other Eukaryotes - 200 (source: NCBI BLink).  protein_id AT5G35210.2p  transcript_id AT5G35210.2  protein_id AT5G35210.2p  transcript_id AT5G35210.2  
At5g35210	chr5:013481442	0.0	C/13481442-13482238,13480501-13481162,13479394-13480346,13478828-13479107,13478549-13478677,13478324-13478415,13477966-13478058,13477553-13477628,13477155-13477457,13476227-13477057,13475837-13475889,13475336-13475547,13475200-13475250,13475046-13475115,13474728-13474796,13474592-13474642,13474499-13474507	AT5G35210.1  CDS  gene_syn T25C13.90, T25C13_90  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process proteolysis|GO:0006508||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product peptidase M50 family protein / sterol-regulatory element binding protein (SREBP) site 2 protease family protein  note peptidase M50 family protein / sterol-regulatory element binding protein (SREBP) site 2 protease family protein; FUNCTIONS IN: protein binding, DNA binding, metalloendopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis, regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast envelope; EXPRESSED IN: male gametophyte; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: DDT family (InterPro:IPR004022), Zinc finger, PHD-type (InterPro:IPR001965), Peptidase M50 (InterPro:IPR008915), DDT superfamily (InterPro:IPR018501), DDT subgroup (InterPro:IPR018500), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT5G22760.1); Has 3280 Blast hits to 2945 proteins in 255 species: Archae - 62; Bacteria - 178; Metazoa - 2100; Fungi - 246; Plants - 447; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).  protein_id AT5G35210.1p  transcript_id AT5G35210.1  protein_id AT5G35210.1p  transcript_id AT5G35210.1  
At5g35220	chr5:013487211	0.0	C/13487211-13487546,13486525-13486980,13486296-13486436,13486078-13486179,13485641-13485852,13485505-13485555,13485365-13485434,13484985-13485053,13484847-13484897,13484606-13484764	AT5G35220.1  CDS  gene_syn EGY1, ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1, T25C13.100, T25C13_100  gene EGY1  function Membrane-associated and ATP-independent metalloprotease; EGY1 protein contains eight trans-membrane domains at its C-terminus, and carries out beta-casein degradation in an ATP-independent manner. EGY1 is required for development of both thylakoid grana and a well-organized lamellae system in chloroplast. Additionally, EGY1 is required for the accumulation of chlorophyll and chlorophyll a/b binding (CAB) proteins (both PS I and PS II) in chloroplast membranes, and for grana formation and normal chloroplast development. Loss of EGY1 function also has an effect on endodermal plastid biogenesis.  go_component chloroplast|GO:0009507|18431481|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component chloroplast|GO:0009507|15659096|IDA  go_component membrane|GO:0016020|11152613|ISS  go_process response to light stimulus|GO:0009416|15659096|IEP  go_process gravitropism|GO:0009630|15659096|IMP  go_process chloroplast organization|GO:0009658|18097640|IMP  go_process response to ethylene stimulus|GO:0009723|15659096|IEP  go_process negative gravitropism|GO:0009959|15659096|IMP  go_process thylakoid membrane organization|GO:0010027|15659096|IMP  go_process photosystem II assembly|GO:0010207|15659096|IMP  go_process photosystem I assembly|GO:0048564|15659096|IMP  go_function metalloendopeptidase activity|GO:0004222|15659096|IDA  product EGY1 (ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1); metalloendopeptidase  note ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1 (EGY1); FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: in 9 processes; LOCATED IN: chloroplast, membrane; EXPRESSED IN: hypocotyl endodermis, flower, leaf, peduncle; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Peptidase M50 (InterPro:IPR008915); BEST Arabidopsis thaliana protein match is: peptidase M50 family protein / sterol-regulatory element binding protein (SREBP) site 2 protease family protein (TAIR:AT5G35210.1); Has 410 Blast hits to 410 proteins in 135 species: Archae - 80; Bacteria - 214; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT5G35220.1p  transcript_id AT5G35220.1  protein_id AT5G35220.1p  transcript_id AT5G35220.1  
At5g35230	chr5:013491143	0.0	C/13491143-13491673,13490965-13491047,13490736-13490869,13490574-13490650,13490396-13490478,13490167-13490300,13489978-13490036	AT5G35230.1  CDS  gene_syn T25C13.110, T25C13_110  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 2 Blast hits to 2 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G35230.1p  transcript_id AT5G35230.1  protein_id AT5G35230.1p  transcript_id AT5G35230.1  
At5g35240	chr5:013495594	0.0	W/13495594-13497910	AT5G35240.1  mRNA_TE_gene  pseudo  gene_syn T25C13.120, T25C13_120  note Transposable element gene, pseudogene, similar to putative transposable element, blastp match of 47% identity and 9.3e-52 P-value to GP|13122426|dbj|BAB32907.1||AP003047 putative transposable element {Oryza sativa (japonica cultivar-group)}  
At5g35250	chr5:013501485	0.0	W/13501485-13503772	AT5G35250.1  mRNA_TE_gene  pseudo  gene_syn T25C13.130, T25C13_130  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07450.1); similar to hypothetical protein 31.t00031 [Brassica oleracea] (GB:ABD65118.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At5g35260	chr5:013504638	0.0	W/13504638-13505971	AT5G35260.1  mRNA_TE_gene  pseudo  gene_syn T25C13.140, T25C13_140  note Transposable element gene, similar to replication protein-related [Arabidopsis thaliana] (TAIR:AT4G07440.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At5g35270	chr5:013507448	0.0	W/13507448-13508381	AT5G35270.1  mRNA_TE_gene  pseudo  gene_syn T25C13.150, T25C13_150  note Transposable element gene, similar to cytochrome P-450 aromatase-related [Arabidopsis thaliana] (TAIR:AT4G07435.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340)  
At5g35280	chr5:013509622	0.0	W/13509622-13510530	AT5G35280.1  mRNA_TE_gene  pseudo  gene_syn T26D22.1, T26D22_1  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07310.1); similar to hypothetical protein 31.t00082 [Brassica oleracea] (GB:ABD65101.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At5g35290	chr5:013518251	0.0	C/13518251-13518306,13518117-13518182,13517887-13518001	AT5G35290.1  CDS  gene_syn T26D22.20, T26D22_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G35290.1p  transcript_id AT5G35290.1  protein_id AT5G35290.1p  transcript_id AT5G35290.1  
At5g35300	chr5:013518317	0.0	W/13518317-13518385,13518620-13518754,13518845-13518949	AT5G35300.1  CDS  gene_syn T26D22.30, T26D22_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G35300.1p  transcript_id AT5G35300.1  protein_id AT5G35300.1p  transcript_id AT5G35300.1  
At5g35310	chr5:013520905	0.0	C/13520905-13521327	AT5G35310.2  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.0e-24 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element)  
At5g35320	chr5:013521893	0.0	W/13521893-13522000,13522091-13522280,13522765-13523144	AT5G35320.1  CDS  gene_syn T26D22.2, T26D22_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G35320.1p  transcript_id AT5G35320.1  protein_id AT5G35320.1p  transcript_id AT5G35320.1  
At5g35330	chr5:013524825	0.0	C/13524825-13525270,13524666-13524719,13524090-13524247,13523725-13523885	AT5G35330.1  CDS  gene_syn MBD02, MBD2, METHYL-CPG-BINDING DOMAIN PROTEIN 02, METHYL-CPG-BINDING DOMAIN PROTEIN 2, T26D22.18, T26D22_18  gene MBD02  function Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.  go_component nucleus|GO:0005634|15805479|IDA  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  go_function DNA demethylase activity|GO:0051747|12787239|IDA  product MBD02 (METHYL-CPG-BINDING DOMAIN PROTEIN 02); DNA binding / DNA demethylase  note METHYL-CPG-BINDING DOMAIN PROTEIN 02 (MBD02); FUNCTIONS IN: DNA demethylase activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: MBD12 (METHYL-CPG-BINDING DOMAIN 12); methyl-CpG binding (TAIR:AT5G35338.2); Has 167 Blast hits to 166 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 101; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G35330.1p  transcript_id AT5G35330.1  protein_id AT5G35330.1p  transcript_id AT5G35330.1  
At5g35330	chr5:013524825	0.0	C/13524825-13525270,13524666-13524719,13524090-13524247,13523725-13523885	AT5G35330.2  CDS  gene_syn MBD02, MBD2, METHYL-CPG-BINDING DOMAIN PROTEIN 02, METHYL-CPG-BINDING DOMAIN PROTEIN 2, T26D22.18, T26D22_18  gene MBD02  function Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.  go_component nucleus|GO:0005634|15805479|IDA  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  go_function DNA demethylase activity|GO:0051747|12787239|IDA  product MBD02 (METHYL-CPG-BINDING DOMAIN PROTEIN 02); DNA binding / DNA demethylase  note METHYL-CPG-BINDING DOMAIN PROTEIN 02 (MBD02); FUNCTIONS IN: DNA demethylase activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: MBD12 (METHYL-CPG-BINDING DOMAIN 12); methyl-CpG binding (TAIR:AT5G35338.2); Has 167 Blast hits to 166 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 101; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G35330.2p  transcript_id AT5G35330.2  protein_id AT5G35330.2p  transcript_id AT5G35330.2  
At5g35331	chr5:013526418	0.0	C/13526418-13531682	AT5G35331.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 7.8e-44 P-value blast match to GB:BAA20419 reverse transcriptase (LINE-element) (Mus musculus)  
At5g35332	chr5:013532432	0.0	W/13532432-13536037	AT5G35332.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein, similar to putative reverse transcriptase  
At5g35334	chr5:013537917	0.0	W/13537917-13538984	AT5G35334.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.3e-50 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g35336	chr5:013543157	0.0	W/13543157-13544446	AT5G35336.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to SAE1-S9-protein, similar to putative non-LTR retroelement reverse transcriptase; blastp match of 33% identity and 3.1e-07 P-value to GP|4760708|dbj|BAA77394.1||AB012866 SAE1-S9-protein {Brassica rapa}  
At5g35337	chr5:013545609	0.0	C/13545609-13546581	AT5G35337.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g35338	chr5:013549877	0.0	C/13549877-13550124,13549744-13549797,13549343-13549508	AT5G35338.2  CDS  gene_syn MBD12, METHYL-CPG-BINDING DOMAIN 12  gene MBD12  function Protein containing a putative methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.  go_component nucleus|GO:0005634||IEA  go_process biological_process|GO:0008150||ND  go_function methyl-CpG binding|GO:0008327|12787239|ISS  product MBD12 (METHYL-CPG-BINDING DOMAIN 12); methyl-CpG binding  note METHYL-CPG-BINDING DOMAIN 12 (MBD12); FUNCTIONS IN: methyl-CpG binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: MBD02 (METHYL-CPG-BINDING DOMAIN PROTEIN 02); DNA binding / DNA demethylase (TAIR:AT5G35330.2); Has 112 Blast hits to 111 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 50; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G35338.2p  transcript_id AT5G35338.2  protein_id AT5G35338.2p  transcript_id AT5G35338.2  
At5g35339	chr5:013552638	0.0	W/13552638-13552951	AT5G35339.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At5g35341	chr5:013554778	0.0	W/13554778-13557670	AT5G35341.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g35340	chr5:013562792	0.0	W/13562792-13565902	AT5G35340.1  mRNA_TE_gene  pseudo  gene_syn T26D22.7, T26D22_7  note Transposable element gene, pseudogene, hypothetical protein  
At5g35344	chr5:013568729	0.0	W/13568729-13569617	AT5G35344.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g35348	chr5:013569958	0.0	W/13569958-13570614	AT5G35348.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g35353	chr5:013571676	0.0	C/13571676-13573328	AT5G35353.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 3.4e-44 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At5g35354	chr5:013573968	0.0	C/13573968-13576078	AT5G35354.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 2.6e-18 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At5g35356	chr5:013578381	0.0	W/13578381-13579247	AT5G35356.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to putative copia-like polyprotein, similar to transposon related protein; blastp match of 56% identity and 1.2e-56 P-value to GP|15144516|gb|AAK84483.1||AF275345 putative copia-like polyprotein {Lycopersicon esculentum}  
At5g35360	chr5:013584300	0.0	W/13584300-13584347,13584445-13584788,13584866-13585007,13585149-13585247,13585339-13585395,13585599-13585670,13586034-13586123,13586260-13586319,13586625-13586810,13586895-13586987,13587066-13587147,13587236-13587342,13587558-13587633,13587788-13587834,13587923-13587985,13588221-13588268	AT5G35360.1  CDS  gene_syn ACETYL-COA CARBOXYLASE, CAC2, T26D22.8, T26D22_8  gene CAC2  function Encodes biotin carboxylase subunit (CAC2).  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast|GO:0009507|9414551|ISS  go_process fatty acid biosynthetic process|GO:0006633|9414551|IDA  go_function acetyl-CoA carboxylase activity|GO:0003989|9414551|IDA  go_function biotin carboxylase activity|GO:0004075|9414551|IDA  product CAC2; acetyl-CoA carboxylase/ biotin carboxylase  note CAC2; FUNCTIONS IN: biotin carboxylase activity, acetyl-CoA carboxylase activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Carbamoyl phosphate synthase, large subunit, N-terminal (InterPro:IPR005481), Carbamoyl phosphate synthetase, large subunit, ATP-binding (InterPro:IPR005479), Acetyl-CoA carboxylase, biotin carboxylase (InterPro:IPR004549), PreATP-grasp-like fold (InterPro:IPR016185), Biotin carboxylation region (InterPro:IPR011764), ATP-grasp fold (InterPro:IPR011761), Biotin carboxylase, C-terminal (InterPro:IPR005482), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), Pre-ATP-grasp fold (InterPro:IPR013817), Rudiment single hybrid motif (InterPro:IPR011054); BEST Arabidopsis thaliana protein match is: MCCA; methylcrotonoyl-CoA carboxylase (TAIR:AT1G03090.2); Has 22684 Blast hits to 20473 proteins in 1977 species: Archae - 331; Bacteria - 10851; Metazoa - 1098; Fungi - 645; Plants - 523; Viruses - 0; Other Eukaryotes - 9236 (source: NCBI BLink).  protein_id AT5G35360.1p  transcript_id AT5G35360.1  protein_id AT5G35360.1p  transcript_id AT5G35360.1  
At5g35360	chr5:013584300	0.0	W/13584300-13584347,13584445-13584788,13584866-13585007,13585149-13585247,13585339-13585395,13585599-13585670,13586034-13586123,13586260-13586319,13586625-13586810,13586895-13586987,13587066-13587147,13587236-13587342,13587558-13587637,13587788-13587827	AT5G35360.2  CDS  gene_syn ACETYL-COA CARBOXYLASE, CAC2, T26D22.8, T26D22_8  gene CAC2  function Encodes biotin carboxylase subunit (CAC2).  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|9414551|ISS  go_process fatty acid biosynthetic process|GO:0006633|9414551|IDA  go_function acetyl-CoA carboxylase activity|GO:0003989|9414551|IDA  go_function biotin carboxylase activity|GO:0004075|9414551|IDA  product CAC2; acetyl-CoA carboxylase/ biotin carboxylase  note CAC2; FUNCTIONS IN: biotin carboxylase activity, acetyl-CoA carboxylase activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Carbamoyl phosphate synthase, large subunit, N-terminal (InterPro:IPR005481), Carbamoyl phosphate synthetase, large subunit, ATP-binding (InterPro:IPR005479), Acetyl-CoA carboxylase, biotin carboxylase (InterPro:IPR004549), PreATP-grasp-like fold (InterPro:IPR016185), Biotin carboxylation region (InterPro:IPR011764), ATP-grasp fold (InterPro:IPR011761), Biotin carboxylase, C-terminal (InterPro:IPR005482), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), Pre-ATP-grasp fold (InterPro:IPR013817), Rudiment single hybrid motif (InterPro:IPR011054); BEST Arabidopsis thaliana protein match is: MCCA; methylcrotonoyl-CoA carboxylase (TAIR:AT1G03090.2); Has 22530 Blast hits to 20317 proteins in 1977 species: Archae - 331; Bacteria - 10860; Metazoa - 1094; Fungi - 643; Plants - 521; Viruses - 0; Other Eukaryotes - 9081 (source: NCBI BLink).  protein_id AT5G35360.2p  transcript_id AT5G35360.2  protein_id AT5G35360.2p  transcript_id AT5G35360.2  
At5g35370	chr5:013588564	0.0	C/13588564-13591182	AT5G35370.1  CDS  gene_syn T26D22.12, T26D22_12  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding  note ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding; FUNCTIONS IN: in 7 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: SD2-5 (S-DOMAIN-2 5); carbohydrate binding / kinase/ protein kinase (TAIR:AT4G32300.1); Has 86382 Blast hits to 85281 proteins in 3350 species: Archae - 45; Bacteria - 7297; Metazoa - 37946; Fungi - 6688; Plants - 19444; Viruses - 355; Other Eukaryotes - 14607 (source: NCBI BLink).  protein_id AT5G35370.1p  transcript_id AT5G35370.1  protein_id AT5G35370.1p  transcript_id AT5G35370.1  
At5g35375	chr5:013592257	0.0	W/13592257-13592442,13592859-13592906	AT5G35375.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G35375.1p  transcript_id AT5G35375.1  protein_id AT5G35375.1p  transcript_id AT5G35375.1  
At5g35380	chr5:013596125	0.0	C/13596125-13596293,13595959-13596035,13595754-13595872,13595501-13595676,13595360-13595417,13594993-13595263,13594814-13594915,13593578-13594729,13593429-13593500	AT5G35380.1  CDS  gene_syn T26D22.11, T26D22_11  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process response to stress|GO:0006950||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G07020.1); Has 84023 Blast hits to 83009 proteins in 3215 species: Archae - 58; Bacteria - 7542; Metazoa - 37233; Fungi - 6493; Plants - 18779; Viruses - 222; Other Eukaryotes - 13696 (source: NCBI BLink).  protein_id AT5G35380.1p  transcript_id AT5G35380.1  protein_id AT5G35380.1p  transcript_id AT5G35380.1  
At5g35390	chr5:013596918	0.0	W/13596918-13598247,13598333-13598976	AT5G35390.1  CDS  gene_syn T26D22.9, T26D22_9  function Encodes a member of the receptor-like kinase family of genes. In pollen tubes, it accumulates in the plasma membrane of the apical growing tip through the process of exocytosis.  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component apical plasma membrane|GO:0016324|18591430|IDA  go_component apical part of cell|GO:0045177|18591430|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: apical plasma membrane, apical part of cell; EXPRESSED IN: male gametophyte, sepal, flower, root, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: PRK2A; ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT2G07040.1); Has 72077 Blast hits to 55454 proteins in 1559 species: Archae - 32; Bacteria - 3257; Metazoa - 23411; Fungi - 3491; Plants - 32510; Viruses - 270; Other Eukaryotes - 9106 (source: NCBI BLink).  protein_id AT5G35390.1p  transcript_id AT5G35390.1  protein_id AT5G35390.1p  transcript_id AT5G35390.1  
At5g35400	chr5:013602173	0.0	C/13602173-13602240,13601895-13602000,13601609-13601793,13601343-13601488,13601017-13601108,13600546-13600898,13600319-13600382,13599868-13599930,13599416-13599601	AT5G35400.1  CDS  gene_syn T26D22.10, T26D22_10  go_process pseudouridine synthesis|GO:0001522||IEA  go_process tRNA processing|GO:0008033||IEA  go_function pseudouridine synthase activity|GO:0009982|18599582|TAS  go_function pseudouridine synthase activity|GO:0009982||ISS  product tRNA pseudouridine synthase family protein  note tRNA pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: tRNA processing, pseudouridine synthesis; CONTAINS InterPro DOMAIN/s: tRNA pseudouridine synthase (InterPro:IPR001406); BEST Arabidopsis thaliana protein match is: tRNA pseudouridine synthase family protein (TAIR:AT1G20370.1); Has 4676 Blast hits to 4649 proteins in 1359 species: Archae - 66; Bacteria - 2736; Metazoa - 98; Fungi - 50; Plants - 81; Viruses - 0; Other Eukaryotes - 1645 (source: NCBI BLink).  protein_id AT5G35400.1p  transcript_id AT5G35400.1  protein_id AT5G35400.1p  transcript_id AT5G35400.1  
At5g35405	chr5:013604277	0.0	C/13604277-13604726	AT5G35405.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13261.1); Has 46 Blast hits to 46 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G35405.1p  transcript_id AT5G35405.1  protein_id AT5G35405.1p  transcript_id AT5G35405.1  
At5g35407	chr5:013611798	0.0	W/13611798-13611932	AT5G35407.1  miRNA  gene_syn MICRORNA396B, MIR396B  gene MIR396B  function Encodes a microRNA that targets several GRF family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUCCACAGCUUUCUUGAACUU  product MIR396B (MICRORNA396B); miRNA  transcript_id AT5G35407.1  
At5g35410	chr5:013634933	0.0	W/13634933-13635097,13635184-13635246,13635345-13635416,13635502-13635609,13635707-13635781,13635850-13636029,13636154-13636243,13636347-13636469,13636981-13637100,13637329-13637445,13637664-13637720,13637808-13637882,13637967-13638062	AT5G35410.1  CDS  gene_syn CBL-INTERACTING PROTEIN KINASE 24, CIPK24, K21B8.3, K21B8_3, SALT OVERLY SENSITIVE 2, SNF1-RELATED PROTEIN KINASE 3.11, SOS2, SnRK3.11  gene SOS2  function encodes a member of the CBL-interacting protein kinase family, is a regulatory component controlling plant potassium nutrition  go_component plant-type vacuole membrane|GO:0009705|17825054|IDA  go_process response to salt stress|GO:0009651|9668136|IMP  go_function protein kinase activity|GO:0004672|10725382|IDA  go_function kinase activity|GO:0016301||ISS  product SOS2 (SALT OVERLY SENSITIVE 2); kinase/ protein kinase  note SALT OVERLY SENSITIVE 2 (SOS2); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: response to salt stress; LOCATED IN: plant-type vacuole membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CIPK8 (CBL-INTERACTING PROTEIN KINASE 8); kinase/ protein kinase (TAIR:AT4G24400.1); Has 94445 Blast hits to 92717 proteins in 2776 species: Archae - 79; Bacteria - 8715; Metazoa - 40200; Fungi - 8638; Plants - 18268; Viruses - 474; Other Eukaryotes - 18071 (source: NCBI BLink).  protein_id AT5G35410.1p  transcript_id AT5G35410.1  protein_id AT5G35410.1p  transcript_id AT5G35410.1  
At5g35413	chr5:013639182	0.0	C/13639182-13643273	AT5G35413.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.6e-41 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At5g35416	chr5:013644789	0.0	C/13644789-13649513	AT5G35416.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.2e-16 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At5g35420	chr5:013655195	0.0	C/13655195-13655937	AT5G35420.1  mRNA_TE_gene  pseudo  gene_syn K21B8.7, K21B8_7  note Transposable element gene, pseudogene, hypothetical protein, similar to unknown protein (gb|AAD56332.1)  
At5g35425	chr5:013659849	0.0	C/13659849-13660734	AT5G35425.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g35430	chr5:013662077	0.0	W/13662077-13662265,13662634-13662720,13662979-13663095,13663191-13663277,13663357-13663428,13663927-13665735	AT5G35430.1  CDS  gene_syn AT5G35440, MOK9.1, MOK9_1  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); Has 179 Blast hits to 170 proteins in 58 species: Archae - 0; Bacteria - 4; Metazoa - 132; Fungi - 2; Plants - 21; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT5G35430.1p  transcript_id AT5G35430.1  protein_id AT5G35430.1p  transcript_id AT5G35430.1  
At5g35450	chr5:013667809	0.0	W/13667809-13668679,13668757-13668900,13668995-13670685	AT5G35450.1  CDS  gene_syn MOK9.3, MOK9_3  go_component plasma membrane|GO:0005886|17317660|IDA  go_process apoptosis|GO:0006915||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative  note disease resistance protein (CC-NBS-LRR class), putative; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182); BEST Arabidopsis thaliana protein match is: RPP8 (RECOGNITION OF PERONOSPORA PARASITICA 8); nucleotide binding (TAIR:AT5G43470.2); Has 9582 Blast hits to 9221 proteins in 355 species: Archae - 4; Bacteria - 343; Metazoa - 209; Fungi - 50; Plants - 8918; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT5G35450.1p  transcript_id AT5G35450.1  protein_id AT5G35450.1p  transcript_id AT5G35450.1  
At5g35460	chr5:013672598	0.0	W/13672598-13672678,13672779-13672898,13672985-13673042,13673135-13673235,13673315-13673410,13673499-13673592,13673826-13674063,13674189-13674546	AT5G35460.1  CDS  gene_syn MOK9.4, MOK9_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 147 Blast hits to 147 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 81; Plants - 28; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT5G35460.1p  transcript_id AT5G35460.1  protein_id AT5G35460.1p  transcript_id AT5G35460.1  
At5g35470	chr5:013682476	0.0	C/13682476-13682748	AT5G35470.1  CDS  gene_syn MOK9.5, MOK9_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G35470.1p  transcript_id AT5G35470.1  protein_id AT5G35470.1p  transcript_id AT5G35470.1  
At5g35475	chr5:013687071	0.0	C/13687071-13687326,13686843-13686932,13686565-13686620,13686252-13686335	AT5G35475.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: hAT dimerisation domain-containing protein / transposase-related (TAIR:AT2G06500.1); Has 66 Blast hits to 66 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G35475.1p  transcript_id AT5G35475.1  protein_id AT5G35475.1p  transcript_id AT5G35475.1  
At5g35480	chr5:013689438	0.0	C/13689438-13689554	AT5G35480.1  CDS  gene_syn MOK9.7, MOK9_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G35480.1p  transcript_id AT5G35480.1  protein_id AT5G35480.1p  transcript_id AT5G35480.1  
At5g35490	chr5:013690045	0.0	W/13690045-13690221	AT5G35490.1  CDS  gene_syn MOK9.8, MOK9_8  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G35490.1p  transcript_id AT5G35490.1  protein_id AT5G35490.1p  transcript_id AT5G35490.1  
At5g35495	chr5:013694865	0.0	W/13694865-13698386	AT5G35495.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 5.8e-27 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At5g35510	chr5:013699830	0.0	W/13699830-13700036	AT5G35510.1  CDS  gene_syn MOK9.11, MOK9_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G35510.1p  transcript_id AT5G35510.1  protein_id AT5G35510.1p  transcript_id AT5G35510.1  
At5g35520	chr5:013701396	0.0	W/13701396-13701517,13701594-13701657,13701719-13701838,13701917-13702003,13702082-13702220,13702646-13702777,13703029-13703055,13703323-13703489	AT5G35520.1  CDS  gene_syn MINICHROMOSOME INSTABILITY 12 (MIS12)-LIKE, MINICHROMOSOME INSTABILITY 12 HOMOLOGUE, MIS12, MIS12 HOMOLOGUE, MOK9.12, MOK9_12  gene MIS12  function encodes a homologue of the yeast (S. pombe) Mis12 (minichromosome instability) protein. MIS12 co-localizes with 180 bp repeats of centromeric DNA throughout the cell cycle with a similar pattern to AtCENH3/HTR12. Neither of these two proteins completely cover the 180 bp regions based on FISH analysis.  go_process cell cycle|GO:0007049||IEA  go_process mitosis|GO:0007067||IEA  go_component chromosome, centromeric region|GO:0000775|16331414|IDA  go_component nucleus|GO:0005634|16331414|IDA  go_function molecular_function|GO:0003674||ND  product MIS12 (MINICHROMOSOME INSTABILITY 12 (MIS12)-LIKE)  note MINICHROMOSOME INSTABILITY 12 (MIS12)-LIKE (MIS12); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mitosis, cell cycle; LOCATED IN: chromosome, centromeric region, nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Centromere protein Mis12 (InterPro:IPR008685); Has 47 Blast hits to 46 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 18; Fungi - 2; Plants - 19; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G35520.1p  transcript_id AT5G35520.1  protein_id AT5G35520.1p  transcript_id AT5G35520.1  
At5g35525	chr5:013707084	0.0	W/13707084-13707171,13707281-13707352,13707426-13707638,13707733-13707818	AT5G35525.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14870.1); Has 502 Blast hits to 501 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 76; Plants - 316; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT5G35525.1p  transcript_id AT5G35525.1  protein_id AT5G35525.1p  transcript_id AT5G35525.1  
At5g35526	chr5:013708801	0.0	C/13708801-13708911	AT5G35526.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G35526.1p  transcript_id AT5G35526.1  protein_id AT5G35526.1p  transcript_id AT5G35526.1  
At5g35530	chr5:013712163	0.0	C/13712163-13712192,13711927-13712074,13711666-13711837,13710862-13710916,13710656-13710787,13710355-13710564	AT5G35530.1  CDS  gene_syn MOK9.14, MOK9_14  go_component nucleolus|GO:0005730|15496452|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S3 (RPS3C)  note 40S ribosomal protein S3 (RPS3C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: response to salt stress, translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, prokaryotic type (InterPro:IPR009019), K Homology, type 2 (InterPro:IPR004044), K Homology (InterPro:IPR004087), Ribosomal protein S3, C-terminal (InterPro:IPR001351), Ribosomal protein S3, conserved site (InterPro:IPR018280), Ribosomal protein S3, eukaryotic/archaeal (InterPro:IPR005703); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S3 (RPS3A) (TAIR:AT2G31610.1); Has 3856 Blast hits to 3855 proteins in 1171 species: Archae - 174; Bacteria - 1930; Metazoa - 296; Fungi - 95; Plants - 109; Viruses - 0; Other Eukaryotes - 1252 (source: NCBI BLink).  protein_id AT5G35530.1p  transcript_id AT5G35530.1  protein_id AT5G35530.1p  transcript_id AT5G35530.1  
At5g35535	chr5:013713460	0.0	W/13713460-13719312	AT5G35535.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.2e-31 P-value blast match to GB:NP_038604 L1 repeat, Tf subfamily, member 26 (LINE-element) (Mus musculus)  
At5g35540	chr5:013722137	0.0	W/13722137-13722184,13722340-13722633,13722766-13722993	AT5G35540.1  CDS  gene_syn MOK9.17, MOK9_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, leaf whorl, flower, leaf; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 13 Blast hits to 13 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G35540.1p  transcript_id AT5G35540.1  protein_id AT5G35540.1p  transcript_id AT5G35540.1  
At5g35550	chr5:013726807	0.0	W/13726807-13726945,13727019-13727148,13727222-13727729	AT5G35550.1  CDS  gene_syn ATMYB123, ATTT2, MOK9.18, MOK9_18, MYB DOMAIN PROTEIN 123, MYB123, TRANSPARENT TESTA 2, TT2  gene TT2  function TT2 encodes a R2R3 MYB domain putative transcription factor that acts as a key determinant in the proanthocyanidin accumulation of developing seed. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium.  go_component nucleus|GO:0005634|11549766|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|11597504|ISS  go_process proanthocyanidin biosynthetic process|GO:0010023|11549766|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11549766|ISS  product TT2 (TRANSPARENT TESTA 2); DNA binding / transcription factor  note TRANSPARENT TESTA 2 (TT2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: proanthocyanidin biosynthetic process, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: ATMYB5 (MYB DOMAIN PROTEIN 5); DNA binding / transcription factor (TAIR:AT3G13540.1); Has 6200 Blast hits to 5726 proteins in 354 species: Archae - 0; Bacteria - 0; Metazoa - 659; Fungi - 276; Plants - 3777; Viruses - 6; Other Eukaryotes - 1482 (source: NCBI BLink).  protein_id AT5G35550.1p  transcript_id AT5G35550.1  protein_id AT5G35550.1p  transcript_id AT5G35550.1  
At5g35555	chr5:013736245	0.0	C/13736245-13740702	AT5G35555.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 8.1e-177 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At5g35560	chr5:013747174	0.0	C/13747174-13747464,13746892-13747083,13746730-13746813,13746228-13746287,13746010-13746054,13745711-13745910,13745139-13745504,13744661-13744787,13744382-13744579,13744186-13744275,13743812-13743874,13743633-13743707,13743502-13743552,13743342-13743419,13743010-13743144,13742789-13742896,13742628-13742693,13742458-13742526	AT5G35560.1  CDS  gene_syn MOK9.21, MOK9_21  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DENN (AEX-3) domain-containing protein  note DENN (AEX-3) domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: uDENN (InterPro:IPR005113), dDENN (InterPro:IPR005112), DENN (InterPro:IPR001194); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20320.1); Has 1240 Blast hits to 1225 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 888; Fungi - 59; Plants - 59; Viruses - 0; Other Eukaryotes - 234 (source: NCBI BLink).  protein_id AT5G35560.1p  transcript_id AT5G35560.1  protein_id AT5G35560.1p  transcript_id AT5G35560.1  
At5g35570	chr5:013752859	0.0	C/13752859-13753383,13752325-13752462,13752135-13752207,13751951-13752021,13751774-13751862,13751410-13751542,13751056-13751288,13750404-13750880,13750101-13750320	AT5G35570.1  CDS  gene_syn K2K18.1, K2K18_1  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37980.1); Has 438 Blast hits to 431 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 430; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G35570.1p  transcript_id AT5G35570.1  protein_id AT5G35570.1p  transcript_id AT5G35570.1  
At5g35575	chr5:013756128	0.0	C/13756128-13758995	AT5G35575.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 7.5e-41 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At5g35580	chr5:013761980	0.0	W/13761980-13762354,13762450-13762585,13762669-13762805,13763015-13763851	AT5G35580.1  CDS  gene_syn K2K18.3, K2K18_3  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT2G05940.1); Has 83712 Blast hits to 82697 proteins in 2237 species: Archae - 44; Bacteria - 7703; Metazoa - 36365; Fungi - 6627; Plants - 18475; Viruses - 347; Other Eukaryotes - 14151 (source: NCBI BLink).  protein_id AT5G35580.1p  transcript_id AT5G35580.1  protein_id AT5G35580.1p  transcript_id AT5G35580.1  
At5g35590	chr5:013767693	0.0	C/13767693-13767768,13767523-13767617,13767284-13767365,13767100-13767196,13766902-13766960,13766675-13766757,13765836-13765931,13765599-13765658,13765417-13765509	AT5G35590.1  CDS  gene_syn 20S PROTEASOME SUBUNIT PAA1, K2K18.4, K2K18_4, PAA1, PROTEASOME ALPHA SUBUNIT A 1  gene PAA1  function Encodes 20S proteasome subunit PAA1 (PAA1).  go_component plasma membrane|GO:0005886|17151019|IDA  go_function endopeptidase activity|GO:0004175||IEA  go_function threonine-type endopeptidase activity|GO:0004298||IEA  go_component proteasome core complex|GO:0005839|9373170|TAS  go_component proteasome core complex|GO:0005839|9611183|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_function peptidase activity|GO:0008233||ISS  product PAA1 (PROTEASOME ALPHA SUBUNIT A 1); endopeptidase/ peptidase/ threonine-type endopeptidase  note PROTEASOME ALPHA SUBUNIT A 1 (PAA1); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, plasma membrane; EXPRESSED IN: cotyledon, fruit, guard cell, cultured cell; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Proteasome alpha-subunit, conserved site (InterPro:IPR000426), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: PAA2 (20S PROTEASOME SUBUNIT PAA2); endopeptidase/ peptidase/ threonine-type endopeptidase (TAIR:AT2G05840.1); Has 3867 Blast hits to 3867 proteins in 331 species: Archae - 454; Bacteria - 0; Metazoa - 1393; Fungi - 890; Plants - 462; Viruses - 0; Other Eukaryotes - 668 (source: NCBI BLink).  protein_id AT5G35590.1p  transcript_id AT5G35590.1  protein_id AT5G35590.1p  transcript_id AT5G35590.1  
At5g35600	chr5:013771188	0.0	C/13771188-13771712,13770678-13771106,13770452-13770594,13770268-13770358,13770121-13770162	AT5G35600.1  CDS  gene_syn HDA7, K2K18.5, K2K18_5, histone deacetylase7  gene HDA7  go_component nucleus|GO:0005634||IEA  go_process histone deacetylation|GO:0016575||IEA  go_component nucleus|GO:0005634||ISS  go_process histone deacetylation|GO:0016575||ISS  go_function histone deacetylase activity|GO:0004407|12466527|ISS  go_function histone deacetylase activity|GO:0004407||ISS  product HDA7 (histone deacetylase7); histone deacetylase  note histone deacetylase7 (HDA7); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: histone deacetylation; LOCATED IN: nucleus; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: HDA6 (HISTONE DEACETYLASE 6); histone deacetylase (TAIR:AT5G63110.1); Has 5796 Blast hits to 5695 proteins in 819 species: Archae - 105; Bacteria - 1890; Metazoa - 1099; Fungi - 337; Plants - 270; Viruses - 0; Other Eukaryotes - 2095 (source: NCBI BLink).  protein_id AT5G35600.1p  transcript_id AT5G35600.1  protein_id AT5G35600.1p  transcript_id AT5G35600.1  
At5g35601	chr5:013776348	0.0	C/13776348-13777103	AT5G35601.1  pseudogenic_transcript  pseudo  note pseudogene, cytoplasmic aconitate hydratase, similar to cytoplasmic aconitate hydratase; blastp match of 77% identity and 2.4e-53 P-value to SP|O04916|ACOC_SOLTU Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) (Fragment). (Potato) {Solanum tuberosum}  
At5g35602	chr5:013779115	0.0	W/13779115-13784340	AT5G35602.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 2.0e-171 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At5g35603	chr5:013786122	0.0	C/13786122-13786280,13785856-13786050	AT5G35603.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G32160.1); Has 24 Blast hits to 24 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G35603.1p  transcript_id AT5G35603.1  protein_id AT5G35603.1p  transcript_id AT5G35603.1  
At5g35603	chr5:013786122	0.0	C/13786122-13786280,13785955-13786050,13785820-13785913,13785247-13785380	AT5G35603.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G06583.2).  protein_id AT5G35603.2p  transcript_id AT5G35603.2  protein_id AT5G35603.2p  transcript_id AT5G35603.2  
At5g35604	chr5:013789128	0.0	C/13789128-13789345,13788787-13789031,13788582-13788709,13788205-13788510	AT5G35604.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT5G32590.1); Has 34 Blast hits to 33 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 1; Plants - 19; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G35604.1p  transcript_id AT5G35604.1  protein_id AT5G35604.1p  transcript_id AT5G35604.1  
At5g35606	chr5:013791080	0.0	W/13791080-13794238	AT5G35606.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 9.5e-133 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At5g35607	chr5:013795196	0.0	C/13795196-13796686	AT5G35607.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 8.6e-07 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At5g35608	chr5:013798471	0.0	W/13798471-13800663	AT5G35608.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 4.6e-38 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays)  
At5g35605	chr5:013805982	0.0	C/13805982-13806054	AT5G35605.1  tRNA  gene_syn 67711.TRNA-ARG-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: CCT)  transcript_id AT5G35605.1  
At5g35610	chr5:013820166	0.0	C/13820166-13820293,13819827-13820046,13819506-13819625	AT5G35610.1  CDS  gene_syn MJE4.6, MJE4_6  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function molecular_function|GO:0003674||ND  product paired amphipathic helix repeat-containing protein  note paired amphipathic helix repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SNL4 (SIN3-LIKE 4) (TAIR:AT1G70060.1); Has 365 Blast hits to 357 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 176; Fungi - 98; Plants - 78; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT5G35610.1p  transcript_id AT5G35610.1  protein_id AT5G35610.1p  transcript_id AT5G35610.1  
At5g35615	chr5:013821824	0.0	C/13821824-13823683	AT5G35615.1  pseudogenic_transcript  pseudo  note pseudogene, similar to putative reverse transcriptase, blastp match of 35% identity and 7.1e-37 P-value to GP|20279456|gb|AAM18736.1|AC092548_14|AC092548 putative reverse transcriptase {Oryza sativa (japonica cultivar-group)}  
At5g35620	chr5:013826141	0.0	C/13826141-13826331,13825806-13825980,13825570-13825707	AT5G35620.2  CDS  gene_syn EIF(ISO)4E, EIF4E2, EUKARYOTIC INITIATION FACTOR (ISO)4E, EUKARYOTIC TRANSLATION INITATION FACTOR 4E2, LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1, LSP, LSP1, MJE4.8, MJE4_8  gene LSP1  function Cap-binding protein, binds to the 5  cap structure of nuclear-encoded mRNAs. Mutant is resistant to potyvirus infection.  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component cytoplasm|GO:0005737||ISS  go_component cytoplasm|GO:0005737||TAS  go_process translational initiation|GO:0006413||ISS  go_process translational initiation|GO:0006413||TAS  go_process response to virus|GO:0009615|9680977|IMP  go_function RNA 7-methylguanosine cap binding|GO:0000340|8980477|TAS  go_function RNA binding|GO:0003723||ISS  go_function translation initiation factor activity|GO:0003743|12123581|TAS  go_function translation initiation factor activity|GO:0003743||ISS  product LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1); RNA 7-methylguanosine cap binding / RNA binding / translation initiation factor  note LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1 (LSP1); FUNCTIONS IN: RNA binding, RNA 7-methylguanosine cap binding, translation initiation factor activity; INVOLVED IN: response to virus, translational initiation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Eukaryotic translation initiation factor 4E (eIF-4E) (InterPro:IPR001040); BEST Arabidopsis thaliana protein match is: EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E); RNA binding / RNA cap binding / protein binding / translation initiation factor (TAIR:AT4G18040.1); Has 1302 Blast hits to 1302 proteins in 203 species: Archae - 0; Bacteria - 0; Metazoa - 606; Fungi - 224; Plants - 237; Viruses - 0; Other Eukaryotes - 235 (source: NCBI BLink).  protein_id AT5G35620.2p  transcript_id AT5G35620.2  protein_id AT5G35620.2p  transcript_id AT5G35620.2  
At5g35620	chr5:013826141	0.0	C/13826141-13826331,13825806-13825980,13825576-13825707,13825068-13825133,13824946-13824978	AT5G35620.1  CDS  gene_syn EIF(ISO)4E, EIF4E2, EUKARYOTIC INITIATION FACTOR (ISO)4E, EUKARYOTIC TRANSLATION INITATION FACTOR 4E2, LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1, LSP, LSP1, MJE4.8, MJE4_8  gene LSP1  function Cap-binding protein, binds to the 5  cap structure of nuclear-encoded mRNAs. Mutant is resistant to potyvirus infection.  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component cytoplasm|GO:0005737||ISS  go_component cytoplasm|GO:0005737||TAS  go_process translational initiation|GO:0006413||ISS  go_process translational initiation|GO:0006413||TAS  go_process response to virus|GO:0009615|9680977|IMP  go_function RNA 7-methylguanosine cap binding|GO:0000340|8980477|TAS  go_function RNA binding|GO:0003723||ISS  go_function translation initiation factor activity|GO:0003743|12123581|TAS  go_function translation initiation factor activity|GO:0003743||ISS  product LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1); RNA 7-methylguanosine cap binding / RNA binding / translation initiation factor  note LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1 (LSP1); FUNCTIONS IN: RNA binding, RNA 7-methylguanosine cap binding, translation initiation factor activity; INVOLVED IN: response to virus, translational initiation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Eukaryotic translation initiation factor 4E (eIF-4E) (InterPro:IPR001040); BEST Arabidopsis thaliana protein match is: EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E); RNA binding / RNA cap binding / protein binding / translation initiation factor (TAIR:AT4G18040.1); Has 1308 Blast hits to 1308 proteins in 204 species: Archae - 0; Bacteria - 0; Metazoa - 608; Fungi - 226; Plants - 238; Viruses - 0; Other Eukaryotes - 236 (source: NCBI BLink).  protein_id AT5G35620.1p  transcript_id AT5G35620.1  protein_id AT5G35620.1p  transcript_id AT5G35620.1  
At5g35630	chr5:013831220	0.0	W/13831220-13831507,13831589-13831692,13831769-13831817,13831901-13832007,13832093-13832180,13832263-13832391,13832473-13832547,13832621-13832872,13832959-13833019,13833100-13833239	AT5G35630.1  CDS  gene_syn ATGSL1, GLN2, GLUTAMINE SYNTHETASE 2, GLUTAMINE SYNTHETASE LIKE 1, GS2, MJE4.9, MJE4_9  gene GS2  function chloroplastic glutamine synthetase  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component mitochondrion|GO:0005739|15273293|IDA  go_component chloroplast|GO:0009507|10482686|NAS  go_component chloroplast|GO:0009507|15273293|IDA  go_process aging|GO:0007568|10444084|TAS  go_process response to light stimulus|GO:0009416|10482686|IEP  go_process response to sucrose stimulus|GO:0009744|10482686|IEP  go_process response to glucose stimulus|GO:0009749|10482686|IEP  go_process response to fructose stimulus|GO:0009750|10482686|IEP  go_process ammonia assimilation cycle|GO:0019676|16338958|TAS  go_function glutamate-ammonia ligase activity|GO:0004356|15273293|IDA  go_function glutamate-ammonia ligase activity|GO:0004356|1684022|IEP  go_function glutamate-ammonia ligase activity|GO:0004356|1684022|TAS  go_function glutamate-ammonia ligase activity|GO:0004356||ISS  product GS2 (GLUTAMINE SYNTHETASE 2); glutamate-ammonia ligase  note GLUTAMINE SYNTHETASE 2 (GS2); FUNCTIONS IN: glutamate-ammonia ligase activity; INVOLVED IN: in 7 processes; LOCATED IN: in 9 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine synthetase, catalytic region (InterPro:IPR008146), Glutamine synthetase, beta-Grasp (InterPro:IPR008147), Glutamine synthetase/guanido kinase, catalytic region (InterPro:IPR014746); BEST Arabidopsis thaliana protein match is: ATGSR1; copper ion binding / glutamate-ammonia ligase (TAIR:AT5G37600.1); Has 5934 Blast hits to 5931 proteins in 1596 species: Archae - 96; Bacteria - 1876; Metazoa - 377; Fungi - 169; Plants - 1090; Viruses - 3; Other Eukaryotes - 2323 (source: NCBI BLink).  protein_id AT5G35630.1p  transcript_id AT5G35630.1  protein_id AT5G35630.1p  transcript_id AT5G35630.1  
At5g35630	chr5:013831220	0.0	W/13831220-13831507,13831589-13831692,13831769-13831817,13831901-13832007,13832093-13832180,13832263-13832391,13832473-13832547,13832621-13832872,13832959-13833019,13833100-13833239	AT5G35630.2  CDS  gene_syn ATGSL1, GLN2, GLUTAMINE SYNTHETASE 2, GLUTAMINE SYNTHETASE LIKE 1, GS2, MJE4.9, MJE4_9  gene GS2  function chloroplastic glutamine synthetase  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component mitochondrion|GO:0005739|15273293|IDA  go_component chloroplast|GO:0009507|10482686|NAS  go_component chloroplast|GO:0009507|15273293|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process aging|GO:0007568|10444084|TAS  go_process response to light stimulus|GO:0009416|10482686|IEP  go_process response to sucrose stimulus|GO:0009744|10482686|IEP  go_process response to glucose stimulus|GO:0009749|10482686|IEP  go_process response to fructose stimulus|GO:0009750|10482686|IEP  go_process ammonia assimilation cycle|GO:0019676|16338958|TAS  go_function glutamate-ammonia ligase activity|GO:0004356|15273293|IDA  go_function glutamate-ammonia ligase activity|GO:0004356|1684022|IEP  go_function glutamate-ammonia ligase activity|GO:0004356|1684022|TAS  go_function glutamate-ammonia ligase activity|GO:0004356||ISS  product GS2 (GLUTAMINE SYNTHETASE 2); glutamate-ammonia ligase  note GLUTAMINE SYNTHETASE 2 (GS2); FUNCTIONS IN: glutamate-ammonia ligase activity; INVOLVED IN: in 7 processes; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine synthetase, catalytic region (InterPro:IPR008146), Glutamine synthetase, beta-Grasp (InterPro:IPR008147), Glutamine synthetase/guanido kinase, catalytic region (InterPro:IPR014746); BEST Arabidopsis thaliana protein match is: ATGSR1; copper ion binding / glutamate-ammonia ligase (TAIR:AT5G37600.1); Has 5934 Blast hits to 5931 proteins in 1596 species: Archae - 96; Bacteria - 1876; Metazoa - 377; Fungi - 169; Plants - 1090; Viruses - 3; Other Eukaryotes - 2323 (source: NCBI BLink).  protein_id AT5G35630.2p  transcript_id AT5G35630.2  protein_id AT5G35630.2p  transcript_id AT5G35630.2  
At5g35630	chr5:013831220	0.0	W/13831220-13831507,13831589-13831692,13831769-13831817,13831901-13832007,13832093-13832180,13832263-13832391,13832473-13832547,13832621-13832872,13832959-13833019,13833100-13833239	AT5G35630.3  CDS  gene_syn ATGSL1, GLN2, GLUTAMINE SYNTHETASE 2, GLUTAMINE SYNTHETASE LIKE 1, GS2, MJE4.9, MJE4_9  gene GS2  function chloroplastic glutamine synthetase  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component mitochondrion|GO:0005739|15273293|IDA  go_component chloroplast|GO:0009507|10482686|NAS  go_component chloroplast|GO:0009507|15273293|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process aging|GO:0007568|10444084|TAS  go_process response to light stimulus|GO:0009416|10482686|IEP  go_process response to sucrose stimulus|GO:0009744|10482686|IEP  go_process response to glucose stimulus|GO:0009749|10482686|IEP  go_process response to fructose stimulus|GO:0009750|10482686|IEP  go_process ammonia assimilation cycle|GO:0019676|16338958|TAS  go_function glutamate-ammonia ligase activity|GO:0004356|15273293|IDA  go_function glutamate-ammonia ligase activity|GO:0004356|1684022|IEP  go_function glutamate-ammonia ligase activity|GO:0004356|1684022|TAS  go_function glutamate-ammonia ligase activity|GO:0004356||ISS  product GS2 (GLUTAMINE SYNTHETASE 2); glutamate-ammonia ligase  note GLUTAMINE SYNTHETASE 2 (GS2); FUNCTIONS IN: glutamate-ammonia ligase activity; INVOLVED IN: in 7 processes; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine synthetase, catalytic region (InterPro:IPR008146), Glutamine synthetase, beta-Grasp (InterPro:IPR008147), Glutamine synthetase/guanido kinase, catalytic region (InterPro:IPR014746); BEST Arabidopsis thaliana protein match is: ATGSR1; copper ion binding / glutamate-ammonia ligase (TAIR:AT5G37600.1); Has 5934 Blast hits to 5931 proteins in 1596 species: Archae - 96; Bacteria - 1876; Metazoa - 377; Fungi - 169; Plants - 1090; Viruses - 3; Other Eukaryotes - 2323 (source: NCBI BLink).  protein_id AT5G35630.3p  transcript_id AT5G35630.3  protein_id AT5G35630.3p  transcript_id AT5G35630.3  
At5g35631	chr5:013833708	0.0	C/13833708-13833929	AT5G35631.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G35631.1p  transcript_id AT5G35631.1  protein_id AT5G35631.1p  transcript_id AT5G35631.1  
At5g35640	chr5:013834633	0.0	W/13834633-13834939,13835335-13835606	AT5G35640.1  CDS  gene_syn MJE4.10, MJE4_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G01355.1); Has 85 Blast hits to 83 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G35640.1p  transcript_id AT5G35640.1  protein_id AT5G35640.1p  transcript_id AT5G35640.1  
At5g35643	chr5:013836115	0.0	W/13836115-13843155	AT5G35643.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g35646	chr5:013843961	0.0	W/13843961-13844653	AT5G35646.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14774.1); similar to hypothetical protein 40.t00047 [Brassica oleracea] (GB:ABD65162.1)  
At5g35650	chr5:013845628	0.0	W/13845628-13846092	AT5G35650.1  mRNA_TE_gene  pseudo  gene_syn MJE4.13, MJE4_13  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G27800.1); contains domain Hedgehog/intein (Hint) domain (SSF51294)  
At5g35655	chr5:013846651	0.0	C/13846651-13847587	AT5G35655.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42760.1); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At5g35657	chr5:013848348	0.0	C/13848348-13851110	AT5G35657.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 1.1e-79 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At5g35660	chr5:013853612	0.0	C/13853612-13853717,13852609-13853534	AT5G35660.1  CDS  gene_syn MJE4.15, MJE4_15  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycine rich (InterPro:IPR010800).  protein_id AT5G35660.1p  transcript_id AT5G35660.1  protein_id AT5G35660.1p  transcript_id AT5G35660.1  
At5g35670	chr5:013856170	0.0	W/13856170-13856244,13856330-13856776,13856852-13857058,13857135-13857248,13857340-13857696,13857782-13857910	AT5G35670.1  CDS  gene_syn IQ-domain 33, MXH1.1, MXH1_1, iqd33  gene iqd33  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product iqd33 (IQ-domain 33); calmodulin binding  note IQ-domain 33 (iqd33); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: iqd2 (IQ-domain 2); calmodulin binding (TAIR:AT5G03040.2); Has 386 Blast hits to 318 proteins in 39 species: Archae - 0; Bacteria - 75; Metazoa - 46; Fungi - 3; Plants - 224; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT5G35670.1p  transcript_id AT5G35670.1  protein_id AT5G35670.1p  transcript_id AT5G35670.1  
At5g35680	chr5:013858152	0.0	C/13858152-13858589	AT5G35680.1  CDS  gene_syn MXH1.2, MXH1_2  go_process translational initiation|GO:0006413||IEA  go_function RNA binding|GO:0003723||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_component cellular_component|GO:0005575||ND  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative  note eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), S1, IF1 type (InterPro:IPR006196), Translation initiation factor 1A (eIF-1A), conserved site (InterPro:IPR018104), Translation initiation factor 1A (eIF-1A) (InterPro:IPR001253); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative (TAIR:AT2G04520.1); Has 778 Blast hits to 778 proteins in 211 species: Archae - 194; Bacteria - 0; Metazoa - 213; Fungi - 65; Plants - 47; Viruses - 0; Other Eukaryotes - 259 (source: NCBI BLink).  protein_id AT5G35680.1p  transcript_id AT5G35680.1  protein_id AT5G35680.1p  transcript_id AT5G35680.1  
At5g35680	chr5:013858152	0.0	C/13858152-13858589	AT5G35680.2  CDS  gene_syn MXH1.2, MXH1_2  go_process translational initiation|GO:0006413||IEA  go_function RNA binding|GO:0003723||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_component cellular_component|GO:0005575||ND  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative  note eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), S1, IF1 type (InterPro:IPR006196), Translation initiation factor 1A (eIF-1A), conserved site (InterPro:IPR018104), Translation initiation factor 1A (eIF-1A) (InterPro:IPR001253); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative (TAIR:AT2G04520.1); Has 778 Blast hits to 778 proteins in 211 species: Archae - 194; Bacteria - 0; Metazoa - 213; Fungi - 65; Plants - 47; Viruses - 0; Other Eukaryotes - 259 (source: NCBI BLink).  protein_id AT5G35680.2p  transcript_id AT5G35680.2  protein_id AT5G35680.2p  transcript_id AT5G35680.2  
At5g35688	chr5:013864215	0.0	C/13864215-13864367	AT5G35688.1  CDS  product unknown protein  note unknown protein; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G35688.1p  transcript_id AT5G35688.1  protein_id AT5G35688.1p  transcript_id AT5G35688.1  
At5g35690	chr5:013867860	0.0	C/13867860-13868117,13867197-13867406,13866913-13866993,13866743-13866829,13866560-13866655,13866428-13866481,13865557-13866335,13865410-13865458,13865271-13865310,13865027-13865184	AT5G35690.1  CDS  gene_syn MXH1.3, MXH1_3  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: WLM (InterPro:IPR013536), PUG (InterPro:IPR006567); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G55915.1); Has 335 Blast hits to 326 proteins in 115 species: Archae - 0; Bacteria - 24; Metazoa - 37; Fungi - 138; Plants - 58; Viruses - 2; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT5G35690.1p  transcript_id AT5G35690.1  protein_id AT5G35690.1p  transcript_id AT5G35690.1  
At5g35695	chr5:013869120	0.0	W/13869120-13869191,13869277-13869343,13869445-13869941	AT5G35695.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 431 Blast hits to 431 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 19; Plants - 363; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G35695.1p  transcript_id AT5G35695.1  protein_id AT5G35695.1p  transcript_id AT5G35695.1  
At5g35698	chr5:013871715	0.0	W/13871715-13871948	AT5G35698.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G35698.1p  transcript_id AT5G35698.1  protein_id AT5G35698.1p  transcript_id AT5G35698.1  
At5g35700	chr5:013876346	0.0	C/13876346-13876432,13876087-13876257,13875752-13875990,13875497-13875668,13875361-13875399,13875162-13875230,13874959-13875075,13874542-13874753,13874164-13874319,13873892-13874091,13873558-13873715,13873374-13873470,13873171-13873262,13872833-13873087	AT5G35700.1  CDS  gene_syn FIM2, FIMBRIN-LIKE PROTEIN 2, MXH1.5, MXH1_5  gene FIM2  go_function actin binding|GO:0003779||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product FIM2 (FIMBRIN-LIKE PROTEIN 2); actin binding  note FIMBRIN-LIKE PROTEIN 2 (FIM2); FUNCTIONS IN: actin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Actinin-type, actin-binding, conserved site (InterPro:IPR001589), Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715); BEST Arabidopsis thaliana protein match is: fimbrin-like protein, putative (TAIR:AT2G04750.1); Has 3351 Blast hits to 2164 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 2808; Fungi - 227; Plants - 75; Viruses - 0; Other Eukaryotes - 241 (source: NCBI BLink).  protein_id AT5G35700.1p  transcript_id AT5G35700.1  protein_id AT5G35700.1p  transcript_id AT5G35700.1  
At5g35710	chr5:013877523	0.0	W/13877523-13878400	AT5G35710.1  mRNA_TE_gene  pseudo  gene_syn MXH1.6, MXH1_6  note Transposable element gene, copia-like retrotransposon family, has a 2.5e-48 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element)  
At5g35715	chr5:013881415	0.0	W/13881415-13882116,13882311-13882937	AT5G35715.1  CDS  gene_syn CYP71B8  gene CYP71B8  function encodes a protein with cytochrome P450 domain  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function oxygen binding|GO:0019825||ISS  product CYP71B8; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71B8; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973); BEST Arabidopsis thaliana protein match is: CYP71B31; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G53300.1); Has 23873 Blast hits to 23799 proteins in 1263 species: Archae - 21; Bacteria - 1975; Metazoa - 10434; Fungi - 4543; Plants - 5927; Viruses - 3; Other Eukaryotes - 970 (source: NCBI BLink).  protein_id AT5G35715.1p  transcript_id AT5G35715.1  protein_id AT5G35715.1p  transcript_id AT5G35715.1  
At5g35720	chr5:013884063	0.0	C/13884063-13885277	AT5G35720.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 6.9e-12 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At5g35725	chr5:013885445	0.0	W/13885445-13890247	AT5G35725.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 4.2e-39 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At5g35730	chr5:013893941	0.0	W/13893941-13894013,13894135-13894277,13894356-13894448,13894535-13894651,13894766-13894861,13895001-13895114,13895314-13895367,13895577-13895624,13895922-13896072,13896177-13896342,13896424-13896493,13896573-13896821	AT5G35730.1  CDS  gene_syn MXH1.10, MXH1_10  go_component integral to membrane|GO:0016021||IEA  go_component integral to membrane|GO:0016021||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product EXS family protein / ERD1/XPR1/SYG1 family protein  note EXS family protein / ERD1/XPR1/SYG1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EXS, C-terminal (InterPro:IPR004342); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32295.1); Has 598 Blast hits to 593 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 226; Fungi - 179; Plants - 106; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).  protein_id AT5G35730.1p  transcript_id AT5G35730.1  protein_id AT5G35730.1p  transcript_id AT5G35730.1  
At5g35732	chr5:013897961	0.0	W/13897961-13898263	AT5G35732.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04795.1); Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G35732.1p  transcript_id AT5G35732.1  protein_id AT5G35732.1p  transcript_id AT5G35732.1  
At5g35735	chr5:013902308	0.0	C/13902308-13902934,13900913-13901500	AT5G35735.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|10080694|ISS  product auxin-responsive family protein  note auxin-responsive family protein; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP037471 (InterPro:IPR017214), Protein of unknown function DUF568, DOMON-like (InterPro:IPR007613), DOMON related (InterPro:IPR005018), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT5G47530.1); Has 377 Blast hits to 377 proteins in 72 species: Archae - 0; Bacteria - 6; Metazoa - 82; Fungi - 31; Plants - 251; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G35735.1p  transcript_id AT5G35735.1  protein_id AT5G35735.1p  transcript_id AT5G35735.1  
At5g35736	chr5:013905836	0.0	W/13905836-13906798	AT5G35736.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g35737	chr5:013907164	0.0	W/13907164-13907535	AT5G35737.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G13450.1); Has 81 Blast hits to 81 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G35737.1p  transcript_id AT5G35737.1  protein_id AT5G35737.1p  transcript_id AT5G35737.1  
At5g35738	chr5:013909371	0.0	W/13909371-13909688	AT5G35738.1  pseudogenic_transcript  pseudo  note pseudogene, similar to transcription factor NtWRKY4, blastp match of 60% identity and 4.4e-08 P-value to GP|6174838|dbj|BAA86031.1||AB026890 transcription factor NtWRKY4 {Nicotiana tabacum}  
At5g35740	chr5:013911026	0.0	C/13911026-13911095,13910692-13910946,13910572-13910606	AT5G35740.1  CDS  gene_syn MXH1.15, MXH1_15  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycosyl hydrolase family protein 17  note glycosyl hydrolase family protein 17; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family protein 17 (TAIR:AT2G04910.2); Has 750 Blast hits to 714 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 747; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G35740.1p  transcript_id AT5G35740.1  protein_id AT5G35740.1p  transcript_id AT5G35740.1  
At5g35750	chr5:013916068	0.0	C/13916068-13916337,13915797-13915970,13915212-13915691,13914856-13915131,13914602-13914771,13914284-13914496,13914004-13914190,13913881-13913932,13913573-13913802,13913380-13913478,13912653-13913293,13912078-13912566,13911743-13911992	AT5G35750.1  CDS  gene_syn AHK2, ARABIDOPSIS HISTIDINE KINASE 2, MXH1.16, MXH1_16  gene AHK2  function Encodes histidine kinase AHK2.  go_component membrane|GO:0016020||IEA  go_process response to osmotic stress|GO:0006970|18077346|IMP  go_process response to water deprivation|GO:0009414|18077346|IEP  go_process response to salt stress|GO:0009651|18077346|IEP  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_process response to abscisic acid stimulus|GO:0009737|18077346|IEP  go_process regulation of seed germination|GO:0010029|16361392|IMP  go_process regulation of chlorophyll catabolic process|GO:0010271|16361392|IMP  go_process regulation of shoot development|GO:0048831|16361392|IMP  go_function protein histidine kinase activity|GO:0004673||ISS  go_function osmosensor activity|GO:0005034|18077346|IGI  go_function cytokinin receptor activity|GO:0009884|16361392|TAS  product AHK2 (ARABIDOPSIS HISTIDINE KINASE 2); cytokinin receptor/ osmosensor/ protein histidine kinase  note ARABIDOPSIS HISTIDINE KINASE 2 (AHK2); FUNCTIONS IN: osmosensor activity, cytokinin receptor activity, protein histidine kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), CHASE (InterPro:IPR006189), Signal transduction histidine kinase, core (InterPro:IPR005467), ATP-binding region, ATPase-like (InterPro:IPR003594), CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver region (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region (InterPro:IPR003661), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: AHK3 (ARABIDOPSIS HISTIDINE KINASE 3); cytokinin receptor/ osmosensor/ protein histidine kinase (TAIR:AT1G27320.1); Has 69869 Blast hits to 60144 proteins in 1748 species: Archae - 404; Bacteria - 58721; Metazoa - 18; Fungi - 1567; Plants - 1308; Viruses - 28; Other Eukaryotes - 7823 (source: NCBI BLink).  protein_id AT5G35750.1p  transcript_id AT5G35750.1  protein_id AT5G35750.1p  transcript_id AT5G35750.1  
At5g35753	chr5:013924857	0.0	C/13924857-13924920,13924445-13924641,13923792-13924197,13922569-13923680	AT5G35753.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G05250.1); Has 372 Blast hits to 224 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 372; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G35753.1p  transcript_id AT5G35753.1  protein_id AT5G35753.1p  transcript_id AT5G35753.1  
At5g35756	chr5:013926081	0.0	C/13926081-13931885	AT5G35756.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 9.3e-30 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)  
At5g35760	chr5:013934108	0.0	W/13934108-13934501,13934643-13934782	AT5G35760.1  CDS  gene_syn MXH1.19, MXH1_19  go_component beta-galactosidase complex|GO:0009341||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  product beta-galactosidase  note beta-galactosidase; FUNCTIONS IN: beta-galactosidase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: beta-galactosidase complex; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944); BEST Arabidopsis thaliana protein match is: beta-galactosidase (TAIR:AT5G01080.1); Has 15 Blast hits to 14 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G35760.1p  transcript_id AT5G35760.1  protein_id AT5G35760.1p  transcript_id AT5G35760.1  
At5g35770	chr5:013940580	0.0	C/13940580-13940786,13936457-13937590	AT5G35770.1  CDS  gene_syn MXH1.20, MXH1_20, SAP, STERILE APETALA  gene SAP  function A recessive mutation in the Arabidopsis STERILE APETALA (SAP) causes severe aberrations in inflorescence and flower and ovule development.  go_process megasporogenesis|GO:0009554|10215627|IMP  go_process flower development|GO:0009908|10215627|IMP  go_function transcription factor activity|GO:0003700|10215627|TAS  go_function transcription regulator activity|GO:0030528|10215627|ISS  product SAP (STERILE APETALA); transcription factor/ transcription regulator  note STERILE APETALA (SAP); FUNCTIONS IN: transcription factor activity, transcription regulator activity; INVOLVED IN: flower development, megasporogenesis; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40/YVTN repeat-like (InterPro:IPR015943); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G35770.1p  transcript_id AT5G35770.1  protein_id AT5G35770.1p  transcript_id AT5G35770.1  
At5g35775	chr5:013945014	0.0	W/13945014-13947770	AT5G35775.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g35777	chr5:013949228	0.0	W/13949228-13953802	AT5G35777.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.0e-67 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At5g35780	chr5:013955413	0.0	W/13955413-13956421	AT5G35780.1  pseudogenic_transcript  pseudo  gene_syn MIK22.1, MIK22_1  note pseudogene, hypothetical protein, contains Pfam profile PF03754: Domain of unknown function (DUF313)  
At5g35790	chr5:013959464	0.0	C/13959464-13959686,13958640-13958877,13958443-13958557,13958156-13958361,13957921-13958070,13957708-13957828,13957199-13957629,13956879-13957125	AT5G35790.1  CDS  gene_syn G6PD1, GLUCOSE-6-PHOSPHATE DEHYDROGENASE 1, MWP19.3  gene G6PD1  function Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is more prevalent in developing organs but absent in the root.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|15634201|ISS  go_process glucose metabolic process|GO:0006006|15634201|IDA  go_process glucose metabolic process|GO:0006006||ISS  go_process pentose-phosphate shunt, oxidative branch|GO:0009051|15634201|IDA  go_function glucose-6-phosphate dehydrogenase activity|GO:0004345|15634201|IDA  go_function glucose-6-phosphate dehydrogenase activity|GO:0004345||ISS  product G6PD1 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 1); glucose-6-phosphate dehydrogenase  note GLUCOSE-6-PHOSPHATE DEHYDROGENASE 1 (G6PD1); FUNCTIONS IN: glucose-6-phosphate dehydrogenase activity; INVOLVED IN: pentose-phosphate shunt, oxidative branch, glucose metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose-6-phosphate dehydrogenase (InterPro:IPR001282); BEST Arabidopsis thaliana protein match is: G6PD2 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 2); glucose-6-phosphate dehydrogenase (TAIR:AT5G13110.1); Has 5531 Blast hits to 5519 proteins in 1289 species: Archae - 0; Bacteria - 3305; Metazoa - 674; Fungi - 122; Plants - 280; Viruses - 2; Other Eukaryotes - 1148 (source: NCBI BLink).  protein_id AT5G35790.1p  transcript_id AT5G35790.1  protein_id AT5G35790.1p  transcript_id AT5G35790.1  
At5g35791	chr5:013961411	0.0	W/13961411-13963498	AT5G35791.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 1.8e-59 P-value blast match to O80466 /172-336 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At5g35792	chr5:013964643	0.0	W/13964643-13965218	AT5G35792.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G29700.1)  
At5g35794	chr5:013965556	0.0	C/13965556-13968112	AT5G35794.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G23480.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G29710.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G04330.1); similar to NF-180 (GB:AAA80106.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048)  
At5g35796	chr5:013968537	0.0	C/13968537-13969932	AT5G35796.1  pseudogenic_transcript  pseudo  note pseudogene, similar to Putative protein kinase, blastp match of 29% identity and 1.6e-16 P-value to GP|21671940|gb|AAM74302.1|AC083944_20|AC083944 Putative protein kinase {Oryza sativa (japonica cultivar-group)}  
At5g35798	chr5:013972007	0.0	C/13972007-13972578	AT5G35798.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mariner-like transposase family, has a 1.9e-52 P-value blast match to GB:AAC28384 mariner transposase (Mariner_TC1-element) (Glycine max)  
At5g35800	chr5:013975327	0.0	C/13975327-13975854	AT5G35800.1  mRNA_TE_gene  pseudo  gene_syn MIK22.8, MIK22_8  note Transposable element gene, pseudogene, similar to simiar to ribosomal protein, similar to unknown protein (gb|AAD32760.1); blastp match of 50% identity and 1.1e-27 P-value to GP|19571128|dbj|BAB86552.1||AP003566 simiar to ribosomal protein {Oryza sativa (japonica cultivar-group)}  
At5g35802	chr5:013978447	0.0	C/13978447-13980051	AT5G35802.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 5.6e-27 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At5g35805	chr5:013983310	0.0	C/13983310-13983651	AT5G35805.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G01700.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)  
At5g35810	chr5:013994139	0.0	C/13994139-13994549,13993428-13994060	AT5G35810.1  CDS  gene_syn MIK22.12, MIK22_12  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT3G54070.1); Has 446 Blast hits to 440 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 446; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G35810.1p  transcript_id AT5G35810.1  protein_id AT5G35810.1p  transcript_id AT5G35810.1  
At5g35820	chr5:013995483	0.0	W/13995483-13999511	AT5G35820.1  mRNA_TE_gene  pseudo  gene_syn MIK22.13, MIK22_13  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At5g35830	chr5:014001326	0.0	C/14001326-14001416,14001096-14001248,14000535-14001002,14000313-14000449	AT5G35830.1  CDS  gene_syn MIK22.14, MIK22_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT3G54070.1); Has 3232 Blast hits to 2234 proteins in 179 species: Archae - 2; Bacteria - 304; Metazoa - 2037; Fungi - 218; Plants - 226; Viruses - 5; Other Eukaryotes - 440 (source: NCBI BLink).  protein_id AT5G35830.1p  transcript_id AT5G35830.1  protein_id AT5G35830.1p  transcript_id AT5G35830.1  
At5g35840	chr5:014008049	0.0	W/14008049-14010065,14010203-14011022,14011121-14011619	AT5G35840.1  CDS  gene_syn MIK22.15, MIK22_15, PHYC, PHYTOCHROME C, phytochrome defective c  gene PHYC  function Encodes the apoprotein of phytochrome;one of a family of photoreceptors that modulate plant growth and development.  go_component membrane|GO:0016020||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process signal transduction|GO:0007165||IEA  go_process sensory perception|GO:0007600||IEA  go_process red, far-red light phototransduction|GO:0009585||IEA  go_process protein-tetrapyrrole linkage|GO:0017006||IEA  go_process peptidyl-histidine phosphorylation|GO:0018106||IEA  go_process protein-chromophore linkage|GO:0018298||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function protein histidine kinase activity|GO:0004673||ISS  product PHYC (phytochrome defective c); protein histidine kinase  note phytochrome defective c (PHYC); FUNCTIONS IN: protein histidine kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATP-binding region, ATPase-like (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome A/B/C/D/E (InterPro:IPR012129), Phytochrome (InterPro:IPR001294), Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region (InterPro:IPR003661), Phytochrome chromophore binding site (InterPro:IPR013516), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: PHYA (PHYTOCHROME A); G-protein coupled photoreceptor/ protein histidine kinase/ red or far-red light photoreceptor/ signal transducer (TAIR:AT1G09570.1); Has 12734 Blast hits to 12565 proteins in 2206 species: Archae - 184; Bacteria - 8861; Metazoa - 2; Fungi - 316; Plants - 2743; Viruses - 5; Other Eukaryotes - 623 (source: NCBI BLink).  protein_id AT5G35840.1p  transcript_id AT5G35840.1  protein_id AT5G35840.1p  transcript_id AT5G35840.1  
At5g35860	chr5:014018386	0.0	C/14018386-14018925	AT5G35860.1  mRNA_TE_gene  pseudo  gene_syn MIK22.17, MIK22_17  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G38037.1); similar to hypothetical protein RcasDRAFT_0417 [Roseiflexus castenholzii DSM 13941] (GB:ZP_01531042.1); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Protein of unknown function DUF321; (InterPro:IPR005529)  
At5g35870	chr5:014021022	0.0	W/14021022-14021612	AT5G35870.1  CDS  gene_syn MIK22.18, MIK22_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04480.1); Has 16 Blast hits to 16 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G35870.1p  transcript_id AT5G35870.1  protein_id AT5G35870.1p  transcript_id AT5G35870.1  
At5g35880	chr5:014022866	0.0	C/14022866-14023024	AT5G35880.1  mRNA_TE_gene  pseudo  gene_syn MIK22.19, MIK22_19  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G32680.1)  
At5g35890	chr5:014025863	0.0	C/14025863-14026726	AT5G35890.1  CDS  gene_syn MIK22.20, MIK22_20  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  product beta-galactosidase  note beta-galactosidase; FUNCTIONS IN: beta-galactosidase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to membrane; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944); BEST Arabidopsis thaliana protein match is: beta-galactosidase (TAIR:AT2G15025.1); Has 13 Blast hits to 13 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G35890.1p  transcript_id AT5G35890.1  protein_id AT5G35890.1p  transcript_id AT5G35890.1  
At5g35900	chr5:014028699	0.0	W/14028699-14029319	AT5G35900.1  CDS  gene_syn LBD35, LOB DOMAIN-CONTAINING PROTEIN 35, MIK22.21, MIK22_21  gene LBD35  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product LBD35 (LOB DOMAIN-CONTAINING PROTEIN 35)  note LOB DOMAIN-CONTAINING PROTEIN 35 (LBD35); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD32 (LOB DOMAIN-CONTAINING PROTEIN 32) (TAIR:AT4G22700.1); Has 487 Blast hits to 484 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 487; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G35900.1p  transcript_id AT5G35900.1  protein_id AT5G35900.1p  transcript_id AT5G35900.1  
At5g35910	chr5:014035015	0.0	C/14035015-14035405,14034713-14034918,14034160-14034315,14033676-14033834,14033511-14033594,14032931-14033010,14032799-14032849,14032608-14032716,14031898-14031980,14031678-14031723,14031496-14031583,14031225-14031394,14030734-14030913,14030555-14030653,14029871-14030485	AT5G35910.1  CDS  gene_syn MIK22.22, MIK22_22  go_component intracellular|GO:0005622||IEA  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function 3 -5  exonuclease activity|GO:0008408||IEA  go_component intracellular|GO:0005622||ISS  go_function nucleic acid binding|GO:0003676||ISS  go_function 3 -5  exonuclease activity|GO:0008408||ISS  product 3 -5  exonuclease domain-containing protein / helicase and RNase D C-terminal domain-containing protein / HRDC domain-containing protein  note 3 -5  exonuclease domain-containing protein / helicase and RNase D C-terminal domain-containing protein / HRDC domain-containing protein; FUNCTIONS IN: 3 -5  exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), 3 -5  exonuclease (InterPro:IPR002562), Helicase and RNase D C-terminal, HRDC (InterPro:IPR002121); BEST Arabidopsis thaliana protein match is: 3 -5  exonuclease/ nucleic acid binding (TAIR:AT1G54440.1); Has 3531 Blast hits to 3474 proteins in 820 species: Archae - 0; Bacteria - 1555; Metazoa - 249; Fungi - 147; Plants - 118; Viruses - 0; Other Eukaryotes - 1462 (source: NCBI BLink).  protein_id AT5G35910.1p  transcript_id AT5G35910.1  protein_id AT5G35910.1p  transcript_id AT5G35910.1  
At5g35912	chr5:014037231	0.0	C/14037231-14038922	AT5G35912.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 4.3e-120 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At5g35914	chr5:014042641	0.0	W/14042641-14043894	AT5G35914.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to Unknown protein, similar to En/Spm-like transposon protein; blastp match of 37% identity and 1.2e-29 P-value to GP|21397269|gb|AAM51833.1|AC105730_7|AC105730 Unknown protein {Oryza sativa (japonica cultivar-group)}  
At5g35915	chr5:014044866	0.0	W/14044866-14045859	AT5G35915.1  pseudogenic_transcript  pseudo  function unknown pseudogene  
At5g35917	chr5:014049123	0.0	W/14049123-14050097,14050504-14050614,14050659-14050878,14050962-14051128	AT5G35917.1  CDS  gene_syn CYP79A3P  gene CYP79A3P  function a pseudogene with cytochrome P450 domain  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product CYP79A3P; electron carrier/ heme binding / iron ion binding / monooxygenase  note CYP79A3P; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, heme binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP79A2 (CYTOCHROME P450 79A2); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen / oxygen binding (TAIR:AT5G05260.1); Has 15234 Blast hits to 15184 proteins in 984 species: Archae - 14; Bacteria - 1185; Metazoa - 7674; Fungi - 1397; Plants - 4468; Viruses - 0; Other Eukaryotes - 496 (source: NCBI BLink).  protein_id AT5G35917.1p  transcript_id AT5G35917.1  protein_id AT5G35917.1p  transcript_id AT5G35917.1  
At5g35918	chr5:014051737	0.0	W/14051737-14052722	AT5G35918.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 7.6e-17 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g35920	chr5:014056437	0.0	W/14056437-14056904	AT5G35920.1  CDS  gene_syn CYP79A4P, F14A1.7, F14A1_7  gene CYP79A4P  function a cytochrome P450 pseudogene  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component cellular_component|GO:0005575||ND  product CYP79A4P; electron carrier/ heme binding / iron ion binding / monooxygenase  note CYP79A4P; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, heme binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP79A2 (CYTOCHROME P450 79A2); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen / oxygen binding (TAIR:AT5G05260.1); Has 10960 Blast hits to 10946 proteins in 672 species: Archae - 6; Bacteria - 361; Metazoa - 5724; Fungi - 905; Plants - 3692; Viruses - 0; Other Eukaryotes - 272 (source: NCBI BLink).  protein_id AT5G35920.1p  transcript_id AT5G35920.1  protein_id AT5G35920.1p  transcript_id AT5G35920.1  
At5g35923	chr5:014059149	0.0	W/14059149-14059757	AT5G35923.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 2.6e-33 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g35926	chr5:014062676	0.0	W/14062676-14062753,14064262-14064900,14065013-14065042,14065238-14065597	AT5G35926.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G41840.1).  protein_id AT5G35926.1p  transcript_id AT5G35926.1  protein_id AT5G35926.1p  transcript_id AT5G35926.1  
At5g35930	chr5:014074029	0.0	C/14074029-14074404,14073265-14073461,14072611-14072817,14071572-14072291,14070448-14071112,14070143-14070218,14069974-14070060,14069773-14069816,14069179-14069287,14068978-14069037,14068551-14068635,14068410-14068474,14068214-14068273,14068080-14068124,14067507-14067616,14067197-14067413	AT5G35930.1  CDS  gene_syn F14A1.10, F14A1_10  go_process metabolic process|GO:0008152||IEA  go_function acyl carrier activity|GO:0000036||IEA  go_function catalytic activity|GO:0003824||IEA  go_function phosphopantetheine binding|GO:0031177||IEA  go_function cofactor binding|GO:0048037||IEA  go_component cellular_component|GO:0005575||ND  go_function AMP binding|GO:0016208||ISS  product AMP-dependent synthetase and ligase family protein  note AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: phosphopantetheine binding, acyl carrier activity, catalytic activity, AMP binding, cofactor binding; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphopantetheine-binding (InterPro:IPR006163), Pyrrolo-quinoline quinone beta-propeller repeat (InterPro:IPR018391), Phosphopantetheine attachment site (InterPro:IPR006162), Pyrrolo-quinoline quinone repeat (InterPro:IPR002372), AMP-dependent synthetase and ligase (InterPro:IPR000873), Acyl carrier protein-like (InterPro:IPR009081), Quinonprotein alcohol dehydrogenase-like (InterPro:IPR011047); BEST Arabidopsis thaliana protein match is: acyl-activating enzyme 13 (AAE13) (TAIR:AT3G16170.1); Has 34678 Blast hits to 30020 proteins in 1948 species: Archae - 614; Bacteria - 22592; Metazoa - 1594; Fungi - 2588; Plants - 640; Viruses - 0; Other Eukaryotes - 6650 (source: NCBI BLink).  protein_id AT5G35930.1p  transcript_id AT5G35930.1  protein_id AT5G35930.1p  transcript_id AT5G35930.1  
At5g35932	chr5:014076250	0.0	W/14076250-14078050	AT5G35932.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At5g35935	chr5:014083388	0.0	C/14083388-14089891	AT5G35935.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.0e-232 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At5g35940	chr5:014090825	0.0	W/14090825-14091022,14091428-14091856,14091941-14092396,14092557-14092808	AT5G35940.1  CDS  gene_syn MEE13.1, MEE13_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product jacalin lectin family protein  note jacalin lectin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin lectin family protein (TAIR:AT5G35950.1); Has 1306 Blast hits to 506 proteins in 35 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 1299; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G35940.1p  transcript_id AT5G35940.1  protein_id AT5G35940.1p  transcript_id AT5G35940.1  
At5g35945	chr5:014093675	0.0	W/14093675-14093746,14093966-14094277	AT5G35945.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43410.1); Has 16 Blast hits to 16 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G35945.1p  transcript_id AT5G35945.1  protein_id AT5G35945.1p  transcript_id AT5G35945.1  
At5g35950	chr5:014104943	0.0	W/14104943-14105140,14105226-14105654,14105786-14106241,14106513-14106764	AT5G35950.1  CDS  gene_syn MEE13.5, MEE13_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product jacalin lectin family protein  note jacalin lectin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin lectin family protein (TAIR:AT5G35940.1); Has 1250 Blast hits to 497 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 1234; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G35950.1p  transcript_id AT5G35950.1  protein_id AT5G35950.1p  transcript_id AT5G35950.1  
At5g35960	chr5:014110128	0.0	C/14110128-14110536,14109586-14109837,14109340-14109494,14109181-14109260,14108953-14109088,14108705-14108854,14108524-14108631	AT5G35960.1  CDS  gene_syn MEE13.6, MEE13_6  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G18910.1); Has 84032 Blast hits to 83128 proteins in 2960 species: Archae - 50; Bacteria - 7649; Metazoa - 36695; Fungi - 6543; Plants - 18396; Viruses - 407; Other Eukaryotes - 14292 (source: NCBI BLink).  protein_id AT5G35960.1p  transcript_id AT5G35960.1  protein_id AT5G35960.1p  transcript_id AT5G35960.1  
At5g35965	chr5:014113311	0.0	C/14113311-14117927	AT5G35965.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 5.9e-244 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At5g35970	chr5:014122388	0.0	C/14122388-14123078,14121997-14122305,14121623-14121906,14120417-14121448,14119825-14119993,14119521-14119678,14119060-14119302	AT5G35970.1  CDS  gene_syn MEE13.8, MEE13_8  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product DNA-binding protein, putative  note DNA-binding protein, putative; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT2G03270.1); Has 4190 Blast hits to 3792 proteins in 629 species: Archae - 127; Bacteria - 1245; Metazoa - 1069; Fungi - 666; Plants - 278; Viruses - 0; Other Eukaryotes - 805 (source: NCBI BLink).  protein_id AT5G35970.1p  transcript_id AT5G35970.1  protein_id AT5G35970.1p  transcript_id AT5G35970.1  
At5g35980	chr5:014128551	0.0	W/14128551-14128712,14129989-14130188,14130340-14130493,14130595-14130704,14130836-14130905,14131002-14131084,14131163-14131241,14131327-14131367,14131675-14131797,14132154-14132304,14132546-14132660,14132758-14132840,14132941-14133015,14133350-14133424,14133512-14134329,14134837-14134992,14135505-14135803,14135908-14135984	AT5G35980.1  CDS  gene_syn MEE13.9, MEE13_9, YAK1, YEAST YAK1-RELATED GENE 1  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G40120.1); Has 70098 Blast hits to 67710 proteins in 1741 species: Archae - 34; Bacteria - 4160; Metazoa - 32204; Fungi - 7420; Plants - 10654; Viruses - 328; Other Eukaryotes - 15298 (source: NCBI BLink).  protein_id AT5G35980.1p  transcript_id AT5G35980.1  protein_id AT5G35980.1p  transcript_id AT5G35980.1  
At5g35980	chr5:014128551	0.0	W/14128551-14128712,14129989-14130188,14130340-14130493,14130595-14130704,14130836-14130905,14131002-14131084,14131163-14131241,14131327-14131367,14131675-14131797,14132154-14132304,14132546-14132660,14132758-14132840,14132941-14133015,14133350-14133424,14133512-14134354	AT5G35980.2  CDS  gene_syn MEE13.9, MEE13_9, YAK1, YEAST YAK1-RELATED GENE 1  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G40120.1); Has 68457 Blast hits to 67192 proteins in 1735 species: Archae - 34; Bacteria - 4116; Metazoa - 31613; Fungi - 7348; Plants - 10649; Viruses - 328; Other Eukaryotes - 14369 (source: NCBI BLink).  protein_id AT5G35980.2p  transcript_id AT5G35980.2  protein_id AT5G35980.2p  transcript_id AT5G35980.2  
At5g35995	chr5:014137343	0.0	C/14137343-14138230,14137129-14137269,14136707-14137045	AT5G35995.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G64540.1); Has 1046 Blast hits to 1019 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1046; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G35995.1p  transcript_id AT5G35995.1  protein_id AT5G35995.1p  transcript_id AT5G35995.1  
At5g35995	chr5:014137343	0.0	C/14137343-14138230,14137129-14137269,14136707-14137045	AT5G35995.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G64540.1); Has 1046 Blast hits to 1019 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1046; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G35995.2p  transcript_id AT5G35995.2  protein_id AT5G35995.2p  transcript_id AT5G35995.2  
At5g36000	chr5:014139996	0.0	W/14139996-14140243,14140535-14140734,14140806-14140850,14140947-14141111,14141199-14141246,14141351-14141521,14141612-14141719,14141810-14141892	AT5G36000.1  CDS  gene_syn MEE13.12, MEE13_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61730.1); Has 17 Blast hits to 17 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36000.1p  transcript_id AT5G36000.1  protein_id AT5G36000.1p  transcript_id AT5G36000.1  
At5g36002	chr5:014141898	0.0	C/14141898-14143241	AT5G36002.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT5G36001 and AT5G36000  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G36002.1  
At5g36001	chr5:014142050	0.0	W/14142050-14142715	AT5G36001.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G46495.1); Has 53 Blast hits to 51 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36001.1p  transcript_id AT5G36001.1  protein_id AT5G36001.1p  transcript_id AT5G36001.1  
At5g36002	chr5:014142449	0.0	C/14142449-14143234	AT5G36002.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT5G36001 and AT5G36000  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G36002.2  
At5g36005	chr5:014144014	0.0	W/14144014-14149194	AT5G36005.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 7.3e-48 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)  
At5g36010	chr5:014153202	0.0	W/14153202-14154092	AT5G36010.1  mRNA_TE_gene  pseudo  gene_syn MEE13.15, MEE13_15  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G52410.1); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Protein of unknown function DUF321; (InterPro:IPR005529)  
At5g36015	chr5:014156684	0.0	C/14156684-14157622	AT5G36015.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to OSJNBa0026J14.30, blastp match of 57% identity and 3.0e-64 P-value to GP|20146463|dbj|BAB89243.1||AP004231 OSJNBa0026J14.30 {Oryza sativa (japonica cultivar-group)}  
At5g36020	chr5:014159321	0.0	W/14159321-14162948	AT5G36020.1  mRNA_TE_gene  pseudo  gene_syn MEE13.17, MEE13_17  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52087.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G35110.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G19320.1); similar to hypothetical protein 23.t00036 [Brassica oleracea] (GB:ABD65624.1)  
At5g36030	chr5:014163044	0.0	W/14163044-14164523	AT5G36030.1  mRNA_TE_gene  pseudo  gene_syn MEE13.18, MEE13_18  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G19310.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD65034.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At5g36035	chr5:014166593	0.0	C/14166593-14167380	AT5G36035.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35100.1)  
At5g36040	chr5:014168629	0.0	W/14168629-14169362	AT5G36040.1  mRNA_TE_gene  pseudo  gene_syn MEE13.20, MEE13_20  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G28970.1)  
At5g36050	chr5:014169978	0.0	W/14169978-14170985	AT5G36050.1  mRNA_TE_gene  pseudo  gene_syn MEE13.21, MEE13_21  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G19300.1); similar to hypothetical protein 31.t00082 [Brassica oleracea] (GB:ABD65101.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At5g36060	chr5:014171715	0.0	W/14171715-14172280	AT5G36060.1  mRNA_TE_gene  pseudo  gene_syn MEE13.22, MEE13_22  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G19290.1)  
At5g36070	chr5:014172853	0.0	W/14172853-14173735	AT5G36070.1  mRNA_TE_gene  pseudo  gene_syn MEE13.23, MEE13_23  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35080.1)  
At5g36075	chr5:014177277	0.0	C/14177277-14180402	AT5G36075.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 3.2e-61 P-value blast match to Q9S9L6 /322-461 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At5g36080	chr5:014184423	0.0	W/14184423-14184656,14185050-14185277	AT5G36080.1  CDS  gene_syn MAB16.2, MAB16_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G32904.1); Has 27 Blast hits to 27 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36080.1p  transcript_id AT5G36080.1  protein_id AT5G36080.1p  transcript_id AT5G36080.1  
At5g36090	chr5:014189058	0.0	W/14189058-14189956	AT5G36090.1  mRNA_TE_gene  pseudo  gene_syn MAB16.3, MAB16_3  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28010.1); contains InterPro domain Protein of unknown function DUF321; (InterPro:IPR005529)  
At5g36100	chr5:014193048	0.0	C/14193048-14193654,14192855-14192958	AT5G36100.2  CDS  gene_syn MAB16.4, MAB16_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65090.2); Has 13 Blast hits to 13 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G36100.2p  transcript_id AT5G36100.2  protein_id AT5G36100.2p  transcript_id AT5G36100.2  
At5g36100	chr5:014193048	0.0	C/14193048-14193654,14192894-14192958,14191711-14191926	AT5G36100.1  CDS  gene_syn MAB16.4, MAB16_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65090.2); Has 13 Blast hits to 13 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G36100.1p  transcript_id AT5G36100.1  protein_id AT5G36100.1p  transcript_id AT5G36100.1  
At5g36110	chr5:014195377	0.0	W/14195377-14195915,14196048-14196454,14197037-14197224,14197314-14197613	AT5G36110.1  CDS  gene_syn CYP716A1, MAB16.5, MAB16_5  gene CYP716A1  function member of CYP716A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP716A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP716A1; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP716A2; electron carrier/ heme binding / iron ion binding / monooxygenase (TAIR:AT5G36140.1); Has 22045 Blast hits to 21995 proteins in 1198 species: Archae - 42; Bacteria - 2642; Metazoa - 9882; Fungi - 3594; Plants - 4822; Viruses - 3; Other Eukaryotes - 1060 (source: NCBI BLink).  protein_id AT5G36110.1p  transcript_id AT5G36110.1  protein_id AT5G36110.1p  transcript_id AT5G36110.1  
At5g36120	chr5:014198679	0.0	C/14198679-14199203	AT5G36120.1  CDS  gene_syn CCB3, COFACTOR ASSEMBLY, COMPLEX C (B6F),, MAB16.6, MAB16_6  gene CCB3  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast|GO:0009507|18593701|IDA  go_process cytochrome b6f complex assembly|GO:0010190|18593701|IMP  go_function molecular_function|GO:0003674||ND  product CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),)  note COFACTOR ASSEMBLY, COMPLEX C (B6F), (CCB3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cytochrome b6f complex assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function YGGT (InterPro:IPR003425); Has 552 Blast hits to 552 proteins in 118 species: Archae - 0; Bacteria - 273; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 238 (source: NCBI BLink).  protein_id AT5G36120.1p  transcript_id AT5G36120.1  protein_id AT5G36120.1p  transcript_id AT5G36120.1  
At5g36125	chr5:014204409	0.0	W/14204409-14208495	AT5G36125.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At5g36130	chr5:014209689	0.0	C/14209689-14209811,14209293-14209592	AT5G36130.1  CDS  gene_syn MAB16.8, MAB16_8  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function oxygen binding|GO:0019825||ISS  product cytochrome P450 family  note cytochrome P450 family; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP716A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT5G36110.1); Has 17588 Blast hits to 17564 proteins in 1003 species: Archae - 41; Bacteria - 2061; Metazoa - 8787; Fungi - 2008; Plants - 3927; Viruses - 3; Other Eukaryotes - 761 (source: NCBI BLink).  protein_id AT5G36130.1p  transcript_id AT5G36130.1  protein_id AT5G36130.1p  transcript_id AT5G36130.1  
At5g36140	chr5:014212733	0.0	C/14212733-14213259,14212212-14212641	AT5G36140.1  CDS  gene_syn CYP716A2, MAB16.9, MAB16_9  gene CYP716A2  function member of CYP716A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  product CYP716A2; electron carrier/ heme binding / iron ion binding / monooxygenase  note CYP716A2; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128); BEST Arabidopsis thaliana protein match is: CYP716A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT5G36110.1); Has 1796 Blast hits to 1794 proteins in 313 species: Archae - 10; Bacteria - 636; Metazoa - 230; Fungi - 134; Plants - 619; Viruses - 0; Other Eukaryotes - 167 (source: NCBI BLink).  protein_id AT5G36140.1p  transcript_id AT5G36140.1  protein_id AT5G36140.1p  transcript_id AT5G36140.1  
At5g36150	chr5:014225219	0.0	C/14225219-14225422,14224953-14225138,14224777-14224866,14223543-14223740,14223367-14223451,14222965-14223131,14222661-14222852,14222360-14222473,14222043-14222285,14221676-14221774,14221544-14221600,14220935-14221468,14220737-14220850	AT5G36150.1  CDS  gene_syn ATPEN3, MAB16.10, MAB16_10, putative pentacyclic triterpene synthase 3  gene ATPEN3  go_component cellular_component|GO:0005575||ND  go_process pentacyclic triterpenoid biosynthetic process|GO:0019745||ISS  go_function catalytic activity|GO:0003824||ISS  go_function lupeol synthase activity|GO:0042299|11247608|ISS  product ATPEN3 (putative pentacyclic triterpene synthase 3); catalytic/ lupeol synthase  note putative pentacyclic triterpene synthase 3 (ATPEN3); FUNCTIONS IN: lupeol synthase activity, catalytic activity; INVOLVED IN: pentacyclic triterpenoid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Terpene synthase, conserved site (InterPro:IPR002365), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Squalene cyclase (InterPro:IPR018333), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: BARS1 (BARUOL SYNTHASE 1); baruol synthase/ catalytic (TAIR:AT4G15370.1); Has 1277 Blast hits to 1229 proteins in 355 species: Archae - 0; Bacteria - 507; Metazoa - 72; Fungi - 166; Plants - 334; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink).  protein_id AT5G36150.1p  transcript_id AT5G36150.1  protein_id AT5G36150.1p  transcript_id AT5G36150.1  
At5g36160	chr5:014234858	0.0	C/14234858-14235129,14234314-14234653,14234008-14234226,14233864-14233923,14233635-14233790,14233461-14233554,14233261-14233382	AT5G36160.1  CDS  gene_syn MAB16.11, MAB16_11  go_process cellular amino acid and derivative metabolic process|GO:0006519||IEA  go_process biosynthetic process|GO:0009058||IEA  go_process tyrosine catabolic process to phosphoenolpyruvate|GO:0019446||IEA  go_function catalytic activity|GO:0003824||IEA  go_function transaminase activity|GO:0008483||IEA  go_function transferase activity, transferring nitrogenous groups|GO:0016769||IEA  go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_component cellular_component|GO:0005575||ND  product aminotransferase-related  note aminotransferase-related; FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity; INVOLVED IN: tyrosine catabolic process to phosphoenolpyruvate, cellular amino acid and derivative metabolic process, biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Tyrosine/nicotianamine aminotransferase (InterPro:IPR005958), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: aminotransferase, putative (TAIR:AT5G53970.1); Has 26178 Blast hits to 26175 proteins in 1754 species: Archae - 629; Bacteria - 16075; Metazoa - 638; Fungi - 482; Plants - 916; Viruses - 0; Other Eukaryotes - 7438 (source: NCBI BLink).  protein_id AT5G36160.1p  transcript_id AT5G36160.1  protein_id AT5G36160.1p  transcript_id AT5G36160.1  
At5g36170	chr5:014237809	0.0	C/14237809-14237974,14237653-14237721,14237341-14237561,14237061-14237264,14236760-14236975,14236499-14236685,14236083-14236387	AT5G36170.2  CDS  gene_syn ATPRFB, HCF109, HIGH CHLOROPHYLL FLUORESCENT 109, MAB16.12, MAB16_12, PEPTIDE RELEASE FACTOR 2  gene HCF109  function Required for normal processing of polycistronic plastidial transcripts  go_function translation release factor activity|GO:0003747||IEA  go_function translation release factor activity, codon specific|GO:0016149||IEA  go_component chloroplast|GO:0009507|12468741|IDA  go_process RNA processing|GO:0006396|8768377|IMP  go_process translational termination|GO:0006415|12468741|IMP  go_process translational termination|GO:0006415||ISS  go_process plastid organization|GO:0009657|8768377|IMP  go_function translation release factor activity|GO:0003747||ISS  product HCF109 (HIGH CHLOROPHYLL FLUORESCENT 109); translation release factor/ translation release factor, codon specific  note HIGH CHLOROPHYLL FLUORESCENT 109 (HCF109); FUNCTIONS IN: translation release factor activity, codon specific, translation release factor activity; INVOLVED IN: translational termination, plastid organization, RNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Class I peptide chain release factor (InterPro:IPR000352), Peptide chain release factor 2 (InterPro:IPR004374), Peptide chain release factor (InterPro:IPR005139); BEST Arabidopsis thaliana protein match is: peptide chain release factor, putative (TAIR:AT1G56350.1); Has 11932 Blast hits to 11930 proteins in 1579 species: Archae - 3; Bacteria - 5699; Metazoa - 243; Fungi - 164; Plants - 104; Viruses - 11; Other Eukaryotes - 5708 (source: NCBI BLink).  protein_id AT5G36170.2p  transcript_id AT5G36170.2  protein_id AT5G36170.2p  transcript_id AT5G36170.2  
At5g36170	chr5:014237809	0.0	C/14237809-14237974,14237653-14237724,14237341-14237561,14237061-14237264,14236760-14236975,14236499-14236685,14236083-14236387	AT5G36170.1  CDS  gene_syn ATPRFB, HCF109, HIGH CHLOROPHYLL FLUORESCENT 109, MAB16.12, MAB16_12, PEPTIDE RELEASE FACTOR 2  gene HCF109  function Required for normal processing of polycistronic plastidial transcripts  go_function translation release factor activity|GO:0003747||IEA  go_function translation release factor activity, codon specific|GO:0016149||IEA  go_component chloroplast|GO:0009507|12468741|IDA  go_process RNA processing|GO:0006396|8768377|IMP  go_process translational termination|GO:0006415|12468741|IMP  go_process translational termination|GO:0006415||ISS  go_process plastid organization|GO:0009657|8768377|IMP  go_function translation release factor activity|GO:0003747||ISS  product HCF109 (HIGH CHLOROPHYLL FLUORESCENT 109); translation release factor/ translation release factor, codon specific  note HIGH CHLOROPHYLL FLUORESCENT 109 (HCF109); FUNCTIONS IN: translation release factor activity, codon specific, translation release factor activity; INVOLVED IN: translational termination, plastid organization, RNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Class I peptide chain release factor (InterPro:IPR000352), Peptide chain release factor 2 (InterPro:IPR004374), Peptide chain release factor (InterPro:IPR005139); BEST Arabidopsis thaliana protein match is: peptide chain release factor, putative (TAIR:AT1G56350.1); Has 11934 Blast hits to 11932 proteins in 1579 species: Archae - 3; Bacteria - 5701; Metazoa - 243; Fungi - 164; Plants - 104; Viruses - 11; Other Eukaryotes - 5708 (source: NCBI BLink).  protein_id AT5G36170.1p  transcript_id AT5G36170.1  protein_id AT5G36170.1p  transcript_id AT5G36170.1  
At5g36170	chr5:014237809	0.0	C/14237809-14237974,14237653-14237724,14237341-14237561,14237061-14237264,14236760-14236975,14236499-14236685,14236297-14236406	AT5G36170.3  CDS  gene_syn ATPRFB, HCF109, HIGH CHLOROPHYLL FLUORESCENT 109, MAB16.12, MAB16_12, PEPTIDE RELEASE FACTOR 2  gene HCF109  function Required for normal processing of polycistronic plastidial transcripts  go_function translation release factor activity|GO:0003747||IEA  go_function translation release factor activity, codon specific|GO:0016149||IEA  go_component chloroplast|GO:0009507|12468741|IDA  go_process RNA processing|GO:0006396|8768377|IMP  go_process translational termination|GO:0006415|12468741|IMP  go_process translational termination|GO:0006415||ISS  go_process plastid organization|GO:0009657|8768377|IMP  go_function translation release factor activity|GO:0003747||ISS  product HCF109 (HIGH CHLOROPHYLL FLUORESCENT 109); translation release factor/ translation release factor, codon specific  note HIGH CHLOROPHYLL FLUORESCENT 109 (HCF109); FUNCTIONS IN: translation release factor activity, codon specific, translation release factor activity; INVOLVED IN: translational termination, plastid organization, RNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Class I peptide chain release factor (InterPro:IPR000352), Peptide chain release factor 2 (InterPro:IPR004374), Peptide chain release factor (InterPro:IPR005139); BEST Arabidopsis thaliana protein match is: peptide chain release factor, putative (TAIR:AT1G56350.1); Has 11144 Blast hits to 11144 proteins in 1572 species: Archae - 3; Bacteria - 5534; Metazoa - 195; Fungi - 142; Plants - 91; Viruses - 0; Other Eukaryotes - 5179 (source: NCBI BLink).  protein_id AT5G36170.3p  transcript_id AT5G36170.3  protein_id AT5G36170.3p  transcript_id AT5G36170.3  
At5g36180	chr5:014239198	0.0	W/14239198-14239346,14239435-14239580,14239655-14239731,14239821-14239943,14240036-14240138,14240351-14240490,14240576-14240662,14240758-14240826,14240905-14240976,14241058-14241176,14241248-14241361,14241447-14241492,14241782-14241862	AT5G36180.1  CDS  gene_syn MAB16.13, MAB16_13, scpl1, serine carboxypeptidase-like 1  gene scpl1  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl1 (serine carboxypeptidase-like 1); serine-type carboxypeptidase  note serine carboxypeptidase-like 1 (scpl1); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl2 (serine carboxypeptidase-like 2); serine-type carboxypeptidase (TAIR:AT1G73300.1); Has 2836 Blast hits to 2748 proteins in 348 species: Archae - 0; Bacteria - 360; Metazoa - 588; Fungi - 551; Plants - 997; Viruses - 0; Other Eukaryotes - 340 (source: NCBI BLink).  protein_id AT5G36180.1p  transcript_id AT5G36180.1  protein_id AT5G36180.1p  transcript_id AT5G36180.1  
At5g36185	chr5:014242543	0.0	W/14242543-14243058	AT5G36185.1  pseudogenic_transcript  pseudo  note pseudogene, similar to putative glucose acyltransferase, blastp match of 56% identity and 1.0e-20 P-value to GP|28273381|gb|AAO38467.1||AC120983 putative glucose acyltransferase {Oryza sativa (japonica cultivar-group)}  
At5g36190	chr5:014243109	0.0	C/14243109-14243546	AT5G36190.1  CDS  gene_syn MAB16.14, MAB16_14  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G36200.1); Has 337 Blast hits to 328 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 337; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36190.1p  transcript_id AT5G36190.1  protein_id AT5G36190.1p  transcript_id AT5G36190.1  
At5g36200	chr5:014245091	0.0	C/14245091-14246296,14244106-14244315	AT5G36200.1  CDS  gene_syn MAB16.1, MAB16_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G36820.1); Has 636 Blast hits to 602 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 634; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G36200.1p  transcript_id AT5G36200.1  protein_id AT5G36200.1p  transcript_id AT5G36200.1  
At5g36210	chr5:014252935	0.0	C/14252935-14253272,14252681-14252859,14252486-14252590,14252317-14252388,14252001-14252148,14251847-14251929,14251227-14251282,14250562-14250698,14250393-14250483,14250234-14250299,14249919-14250141,14249636-14249737,14249344-14249429,14249149-14249271,14248898-14248967,14248719-14248810,14248404-14248508,14248202-14248318	AT5G36210.1  CDS  gene_syn MAB16.20  go_component chloroplast|GO:0009507|18431481|IDA  go_process proteolysis|GO:0006508||IEA  go_function serine-type peptidase activity|GO:0008236||IEA  product serine-type peptidase  note serine-type peptidase; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase active site region (InterPro:IPR001375); BEST Arabidopsis thaliana protein match is: acylaminoacyl-peptidase-related (TAIR:AT4G14570.1); Has 5320 Blast hits to 5314 proteins in 668 species: Archae - 124; Bacteria - 2501; Metazoa - 652; Fungi - 161; Plants - 110; Viruses - 0; Other Eukaryotes - 1772 (source: NCBI BLink).  protein_id AT5G36210.1p  transcript_id AT5G36210.1  protein_id AT5G36210.1p  transcript_id AT5G36210.1  
At5g36220	chr5:014255502	0.0	C/14255502-14256015,14254534-14254922,14253827-14254432	AT5G36220.1  CDS  gene_syn CYP81D1, CYP91A1, CYTOCHROME P450 81D1, CYTOCHROME P450 91A1, CYTOCHROME P450 MONOOXYGENASE, T30G6.3, T30G6_3  gene CYP81D1  function member of CYP81D  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP81D1 (CYTOCHROME P450 81D1); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYTOCHROME P450 81D1 (CYP81D1); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP81D8; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G37370.1); Has 25244 Blast hits to 25165 proteins in 1381 species: Archae - 32; Bacteria - 3434; Metazoa - 10191; Fungi - 4627; Plants - 5656; Viruses - 3; Other Eukaryotes - 1301 (source: NCBI BLink).  protein_id AT5G36220.1p  transcript_id AT5G36220.1  protein_id AT5G36220.1p  transcript_id AT5G36220.1  
At5g36223	chr5:014256389	0.0	C/14256389-14259253	AT5G36223.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g36226	chr5:014268570	0.0	W/14268570-14271006	AT5G36226.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 7.7e-38 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At5g36228	chr5:014271691	0.0	W/14271691-14272776	AT5G36228.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding / zinc ion binding  note nucleic acid binding / zinc ion binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25600.1); Has 185 Blast hits to 185 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 185; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36228.1p  transcript_id AT5G36228.1  protein_id AT5G36228.1p  transcript_id AT5G36228.1  
At5g36230	chr5:014273519	0.0	W/14273519-14273523,14273945-14273968,14274067-14274172,14274263-14274331,14274879-14275372,14275846-14276107,14276379-14276587,14276707-14276773	AT5G36230.1  CDS  gene_syn T30G6.9, T30G6_9  go_component membrane|GO:0016020|17432890|IDA  go_function binding|GO:0005488||IEA  go_process regulation of translational initiation|GO:0006446||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein  note eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein; FUNCTIONS IN: binding, translation initiation factor activity; INVOLVED IN: regulation of translational initiation; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: eIF4-gamma/eIF5/eIF2-epsilon (InterPro:IPR003307), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein (TAIR:AT1G65220.1); Has 758 Blast hits to 756 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 591; Fungi - 39; Plants - 97; Viruses - 3; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT5G36230.1p  transcript_id AT5G36230.1  protein_id AT5G36230.1p  transcript_id AT5G36230.1  
At5g36240	chr5:014278772	0.0	C/14278772-14278924,14278567-14278683,14277972-14278466	AT5G36240.1  CDS  gene_syn T30G6.10, T30G6_10  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc knuckle (CCHC-type) family protein  note zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, CCHC retroviral-type (InterPro:IPR013084); BEST Arabidopsis thaliana protein match is: zinc knuckle (CCHC-type) family protein (TAIR:AT3G43590.1); Has 1562 Blast hits to 817 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 670; Fungi - 388; Plants - 254; Viruses - 4; Other Eukaryotes - 246 (source: NCBI BLink).  protein_id AT5G36240.1p  transcript_id AT5G36240.1  protein_id AT5G36240.1p  transcript_id AT5G36240.1  
At5g36250	chr5:014282590	0.0	W/14282590-14282853,14282970-14283353,14283452-14283569,14283651-14283874,14284020-14284376	AT5G36250.1  CDS  gene_syn T30G6.11, T30G6_11  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function catalytic activity|GO:0003824||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C family protein / PP2C family protein (TAIR:AT3G02750.2); Has 3798 Blast hits to 3793 proteins in 223 species: Archae - 0; Bacteria - 4; Metazoa - 1193; Fungi - 435; Plants - 1266; Viruses - 5; Other Eukaryotes - 895 (source: NCBI BLink).  protein_id AT5G36250.1p  transcript_id AT5G36250.1  protein_id AT5G36250.1p  transcript_id AT5G36250.1  
At5g36260	chr5:014287953	0.0	C/14287953-14288179,14287028-14287157,14286695-14286936,14286391-14286615,14286153-14286315,14286008-14286078,14285693-14285783,14285458-14285533,14285308-14285379,14285068-14285219	AT5G36260.1  CDS  gene_syn T30G6.12, T30G6_12  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: anchored to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT1G65240.1); Has 2905 Blast hits to 2895 proteins in 264 species: Archae - 0; Bacteria - 0; Metazoa - 919; Fungi - 666; Plants - 1128; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).  protein_id AT5G36260.1p  transcript_id AT5G36260.1  protein_id AT5G36260.1p  transcript_id AT5G36260.1  
At5g36270	chr5:014292931	0.0	W/14292931-14293584	AT5G36270.1  pseudogenic_transcript  pseudo  gene_syn T30G6.13, T30G6_13  function pseudogene of dehydroascorbate reductase  note similar to DHAR2, glutathione dehydrogenase (ascorbate) [Arabidopsis thaliana] (TAIR:AT1G75270.1); similar to dehydroascorbate reductase [Nicotiana tabacum] (GB:AAL71857.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046)  
At5g36275	chr5:014295283	0.0	C/14295283-14297046	AT5G36275.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.9e-34 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g36280	chr5:014299235	0.0	C/14299235-14299462	AT5G36280.1  CDS  gene_syn T30G6.15, T30G6_15  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: mtACP2 (mitochondrial acyl carrier protein 2); acyl carrier/ metal ion binding (TAIR:AT1G65290.1); Has 8 Blast hits to 8 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36280.1p  transcript_id AT5G36280.1  protein_id AT5G36280.1p  transcript_id AT5G36280.1  
At5g36290	chr5:014302977	0.0	W/14302977-14303054,14303137-14303208,14303291-14303428,14303517-14303615,14303716-14303788,14304254-14304342,14304471-14304554,14304653-14304712,14304784-14304972	AT5G36290.1  CDS  gene_syn T30G6.16, T30G6_16  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0016 (InterPro:IPR001727); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25520.1); Has 1149 Blast hits to 1089 proteins in 454 species: Archae - 7; Bacteria - 695; Metazoa - 131; Fungi - 98; Plants - 102; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT5G36290.1p  transcript_id AT5G36290.1  protein_id AT5G36290.1p  transcript_id AT5G36290.1  
At5g36290	chr5:014302977	0.0	W/14302977-14303054,14303137-14303208,14303291-14303428,14303517-14303615,14303716-14303788,14304254-14304342,14304471-14304554,14304653-14304712,14304784-14304972	AT5G36290.2  CDS  gene_syn T30G6.16, T30G6_16  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0016 (InterPro:IPR001727); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25520.1); Has 1149 Blast hits to 1089 proteins in 454 species: Archae - 7; Bacteria - 695; Metazoa - 131; Fungi - 98; Plants - 102; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT5G36290.2p  transcript_id AT5G36290.2  protein_id AT5G36290.2p  transcript_id AT5G36290.2  
At5g36293	chr5:014306524	0.0	C/14306524-14307036	AT5G36293.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 1.2e-12 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At5g36296	chr5:014309408	0.0	W/14309408-14312221	AT5G36296.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.6e-14 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)  
At5g36297	chr5:014315808	0.0	W/14315808-14316053	AT5G36297.1  pseudogenic_transcript  pseudo  function pseudogene of aspartyl protease family protein  
At5g36300	chr5:014320668	0.0	W/14320668-14320866,14320981-14321204,14321488-14321595,14321860-14322016,14322108-14322182,14322307-14322398	AT5G36300.1  CDS  gene_syn T30G6.18, T30G6_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G42310.1).  protein_id AT5G36300.1p  transcript_id AT5G36300.1  protein_id AT5G36300.1p  transcript_id AT5G36300.1  
At5g36310	chr5:014324711	0.0	C/14324711-14325058	AT5G36310.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36340.1); Has 68 Blast hits to 65 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36310.1p  transcript_id AT5G36310.1  protein_id AT5G36310.1p  transcript_id AT5G36310.1  
At5g36320	chr5:014326901	0.0	C/14326901-14327257	AT5G36320.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36370.1); Has 67 Blast hits to 64 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36320.1p  transcript_id AT5G36320.1  protein_id AT5G36320.1p  transcript_id AT5G36320.1  
At5g36330	chr5:014330187	0.0	C/14330187-14330209,14329098-14329443	AT5G36330.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36340.1).  protein_id AT5G36330.1p  transcript_id AT5G36330.1  protein_id AT5G36330.1p  transcript_id AT5G36330.1  
At5g36340	chr5:014331286	0.0	C/14331286-14331633	AT5G36340.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36310.1); Has 68 Blast hits to 65 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36340.1p  transcript_id AT5G36340.1  protein_id AT5G36340.1p  transcript_id AT5G36340.1  
At5g36350	chr5:014333473	0.0	C/14333473-14333829	AT5G36350.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36480.1); Has 68 Blast hits to 65 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36350.1p  transcript_id AT5G36350.1  protein_id AT5G36350.1p  transcript_id AT5G36350.1  
At5g36360	chr5:014335668	0.0	C/14335668-14336024	AT5G36360.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36480.1); Has 68 Blast hits to 65 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36360.1p  transcript_id AT5G36360.1  protein_id AT5G36360.1p  transcript_id AT5G36360.1  
At5g36370	chr5:014337865	0.0	C/14337865-14338221	AT5G36370.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36480.1); Has 68 Blast hits to 65 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36370.1p  transcript_id AT5G36370.1  protein_id AT5G36370.1p  transcript_id AT5G36370.1  
At5g36380	chr5:014340062	0.0	C/14340062-14340418	AT5G36380.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36480.1); Has 68 Blast hits to 65 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36380.1p  transcript_id AT5G36380.1  protein_id AT5G36380.1p  transcript_id AT5G36380.1  
At5g36390	chr5:014342257	0.0	C/14342257-14342613	AT5G36390.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36480.1); Has 68 Blast hits to 65 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36390.1p  transcript_id AT5G36390.1  protein_id AT5G36390.1p  transcript_id AT5G36390.1  
At5g36400	chr5:014344452	0.0	C/14344452-14344808	AT5G36400.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36480.1); Has 68 Blast hits to 65 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36400.1p  transcript_id AT5G36400.1  protein_id AT5G36400.1p  transcript_id AT5G36400.1  
At5g36410	chr5:014346647	0.0	C/14346647-14347003	AT5G36410.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36480.1); Has 68 Blast hits to 65 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36410.1p  transcript_id AT5G36410.1  protein_id AT5G36410.1p  transcript_id AT5G36410.1  
At5g36420	chr5:014348842	0.0	C/14348842-14349198	AT5G36420.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36480.1); Has 68 Blast hits to 65 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36420.1p  transcript_id AT5G36420.1  protein_id AT5G36420.1p  transcript_id AT5G36420.1  
At5g36430	chr5:014351037	0.0	C/14351037-14351393	AT5G36430.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36480.1); Has 68 Blast hits to 65 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36430.1p  transcript_id AT5G36430.1  protein_id AT5G36430.1p  transcript_id AT5G36430.1  
At5g36440	chr5:014353233	0.0	C/14353233-14353589	AT5G36440.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36480.1); Has 68 Blast hits to 65 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36440.1p  transcript_id AT5G36440.1  protein_id AT5G36440.1p  transcript_id AT5G36440.1  
At5g36450	chr5:014355430	0.0	C/14355430-14355786	AT5G36450.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36480.1); Has 68 Blast hits to 65 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36450.1p  transcript_id AT5G36450.1  protein_id AT5G36450.1p  transcript_id AT5G36450.1  
At5g36460	chr5:014357626	0.0	C/14357626-14357982	AT5G36460.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36480.1); Has 68 Blast hits to 65 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36460.1p  transcript_id AT5G36460.1  protein_id AT5G36460.1p  transcript_id AT5G36460.1  
At5g36470	chr5:014359823	0.0	C/14359823-14360179	AT5G36470.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36480.1); Has 68 Blast hits to 65 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36470.1p  transcript_id AT5G36470.1  protein_id AT5G36470.1p  transcript_id AT5G36470.1  
At5g36480	chr5:014362020	0.0	C/14362020-14362376	AT5G36480.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36470.1); Has 68 Blast hits to 65 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36480.1p  transcript_id AT5G36480.1  protein_id AT5G36480.1p  transcript_id AT5G36480.1  
At5g36490	chr5:014364217	0.0	C/14364217-14364573	AT5G36490.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36500.1); Has 68 Blast hits to 65 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36490.1p  transcript_id AT5G36490.1  protein_id AT5G36490.1p  transcript_id AT5G36490.1  
At5g36500	chr5:014366414	0.0	C/14366414-14366770	AT5G36500.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36490.1); Has 68 Blast hits to 65 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36500.1p  transcript_id AT5G36500.1  protein_id AT5G36500.1p  transcript_id AT5G36500.1  
At5g36510	chr5:014368612	0.0	C/14368612-14368968	AT5G36510.1  pseudogenic_transcript  pseudo  function Encodes a ECA1 gametogenesis related family protein [pseudogene]  
At5g36520	chr5:014370814	0.0	C/14370814-14371170	AT5G36520.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36480.1); Has 68 Blast hits to 65 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36520.1p  transcript_id AT5G36520.1  protein_id AT5G36520.1p  transcript_id AT5G36520.1  
At5g36530	chr5:014373008	0.0	C/14373008-14373364	AT5G36530.1  pseudogenic_transcript  pseudo  function Encodes a ECA1 gametogenesis related family protein [pseudogene]  
At5g36540	chr5:014375201	0.0	C/14375201-14375557	AT5G36540.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36370.1); Has 68 Blast hits to 65 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36540.1p  transcript_id AT5G36540.1  protein_id AT5G36540.1p  transcript_id AT5G36540.1  
At5g36550	chr5:014377394	0.0	C/14377394-14377750	AT5G36550.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36500.1); Has 68 Blast hits to 65 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36550.1p  transcript_id AT5G36550.1  protein_id AT5G36550.1p  transcript_id AT5G36550.1  
At5g36650	chr5:014380268	0.0	C/14380268-14380744	AT5G36650.1  mRNA_TE_gene  pseudo  gene_syn F24C7.1, F24C7_1  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G13320.1)  
At5g36655	chr5:014380888	0.0	W/14380888-14383080	AT5G36655.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 3.9e-132 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At5g36657	chr5:014383877	0.0	C/14383877-14384176	AT5G36657.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36480.1); Has 67 Blast hits to 64 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36657.1p  transcript_id AT5G36657.1  protein_id AT5G36657.1p  transcript_id AT5G36657.1  
At5g36658	chr5:014386072	0.0	C/14386072-14386428	AT5G36658.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36370.1); Has 68 Blast hits to 65 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36658.1p  transcript_id AT5G36658.1  protein_id AT5G36658.1p  transcript_id AT5G36658.1  
At5g36659	chr5:014388322	0.0	C/14388322-14388621	AT5G36659.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36738.1); Has 63 Blast hits to 60 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36659.1p  transcript_id AT5G36659.1  protein_id AT5G36659.1p  transcript_id AT5G36659.1  
At5g36661	chr5:014390429	0.0	C/14390429-14390785	AT5G36661.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36738.1); Has 68 Blast hits to 65 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36661.1p  transcript_id AT5G36661.1  protein_id AT5G36661.1p  transcript_id AT5G36661.1  
At5g36662	chr5:014392619	0.0	C/14392619-14392975	AT5G36662.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36739.1); Has 68 Blast hits to 65 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36662.1p  transcript_id AT5G36662.1  protein_id AT5G36662.1p  transcript_id AT5G36662.1  
At5g36660	chr5:014396688	0.0	W/14396688-14399025	AT5G36660.1  mRNA_TE_gene  pseudo  gene_syn F24C7.3, F24C7_3  note Transposable element gene, pseudogene, hypothetical protein  
At5g36670	chr5:014401491	0.0	W/14401491-14403530,14403616-14403742,14403828-14403940,14404042-14404280,14404422-14404508,14404906-14405005,14405079-14405193,14405568-14405708,14405808-14406427	AT5G36670.1  CDS  gene_syn F24C7.4, F24C7_4  go_function DNA binding|GO:0003677||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product PHD finger family protein  note PHD finger family protein; FUNCTIONS IN: protein binding, DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: AT hook, DNA-binding, conserved site (InterPro:IPR017956), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT5G36740.1); Has 3512 Blast hits to 2940 proteins in 235 species: Archae - 0; Bacteria - 57; Metazoa - 2339; Fungi - 291; Plants - 326; Viruses - 20; Other Eukaryotes - 479 (source: NCBI BLink).  protein_id AT5G36670.1p  transcript_id AT5G36670.1  protein_id AT5G36670.1p  transcript_id AT5G36670.1  
At5g36680	chr5:014409057	0.0	C/14409057-14409137,14408358-14408543,14407722-14407883,14407586-14407639,14407372-14407491,14406802-14407200	AT5G36680.1  CDS  gene_syn MPK17.3  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36770.1); Has 22 Blast hits to 22 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36680.1p  transcript_id AT5G36680.1  protein_id AT5G36680.1p  transcript_id AT5G36680.1  
At5g36685	chr5:014413694	0.0	W/14413694-14414168	AT5G36685.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.8e-11 P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element)  
At5g36690	chr5:014416779	0.0	C/14416779-14417288,14416564-14416695,14416290-14416484,14416101-14416199,14415529-14416020,14415185-14415487	AT5G36690.1  CDS  function AT5G36690 and AT5G36780 represent identical copies. The duplication within clone F27C7 is believed an artifact with only one true copy existing.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36780.1); Has 9966 Blast hits to 7092 proteins in 645 species: Archae - 50; Bacteria - 1152; Metazoa - 3929; Fungi - 769; Plants - 323; Viruses - 31; Other Eukaryotes - 3712 (source: NCBI BLink).  protein_id AT5G36690.1p  transcript_id AT5G36690.1  protein_id AT5G36690.1p  transcript_id AT5G36690.1  
At5g36700	chr5:014424169	0.0	C/14424169-14424430,14423745-14423812,14423529-14423621,14423375-14423446,14423200-14423271,14423036-14423095,14422890-14422942,14422661-14422758,14422351-14422450,14422120-14422240	AT5G36700.3  CDS  gene_syn 2-PHOSPHOGLYCOLATE PHOSPHATASE 1, ATPGLP1, PGLP1  gene PGLP1  go_component chloroplast|GO:0009507|18431481|IDA  go_process metabolic process|GO:0008152||IEA  go_function phosphoglycolate phosphatase activity|GO:0008967|17478634|IMP  go_function phosphoglycolate phosphatase activity|GO:0008967||ISS  product PGLP1 (2-PHOSPHOGLYCOLATE PHOSPHATASE 1); phosphoglycolate phosphatase  note 2-PHOSPHOGLYCOLATE PHOSPHATASE 1 (PGLP1); FUNCTIONS IN: phosphoglycolate phosphatase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), HAD-superfamily hydrolase, subfamily IIA (InterPro:IPR006357), 2-phosphoglycolate phosphatase, eukaryotic (InterPro:IPR006349); BEST Arabidopsis thaliana protein match is: phosphoglycolate phosphatase, putative (TAIR:AT5G36790.2); Has 358 Blast hits to 358 proteins in 85 species: Archae - 7; Bacteria - 100; Metazoa - 225; Fungi - 13; Plants - 9; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G36700.3p  transcript_id AT5G36700.3  protein_id AT5G36700.3p  transcript_id AT5G36700.3  
At5g36700	chr5:014424169	0.0	C/14424169-14424430,14423745-14423812,14423529-14423621,14423375-14423446,14423200-14423271,14423036-14423095,14422890-14422942,14422661-14422758,14422351-14422450,14422137-14422240,14421929-14422035	AT5G36700.1  CDS  gene_syn 2-PHOSPHOGLYCOLATE PHOSPHATASE 1, ATPGLP1, PGLP1  gene PGLP1  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process metabolic process|GO:0008152||IEA  go_function phosphoglycolate phosphatase activity|GO:0008967|17478634|IMP  go_function phosphoglycolate phosphatase activity|GO:0008967||ISS  product PGLP1 (2-PHOSPHOGLYCOLATE PHOSPHATASE 1); phosphoglycolate phosphatase  note 2-PHOSPHOGLYCOLATE PHOSPHATASE 1 (PGLP1); FUNCTIONS IN: phosphoglycolate phosphatase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 7 plant structures; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), HAD-superfamily hydrolase, subfamily IIA (InterPro:IPR006357), 2-phosphoglycolate phosphatase, eukaryotic (InterPro:IPR006349); BEST Arabidopsis thaliana protein match is: phosphoglycolate phosphatase, putative (TAIR:AT5G36790.2); Has 2803 Blast hits to 2801 proteins in 728 species: Archae - 70; Bacteria - 1283; Metazoa - 552; Fungi - 116; Plants - 65; Viruses - 0; Other Eukaryotes - 717 (source: NCBI BLink).  protein_id AT5G36700.1p  transcript_id AT5G36700.1  protein_id AT5G36700.1p  transcript_id AT5G36700.1  
At5g36700	chr5:014424169	0.0	C/14424169-14424430,14423745-14423812,14423529-14423621,14423375-14423446,14423200-14423271,14423036-14423095,14422890-14422942,14422661-14422758,14422351-14422450,14422137-14422240,14421929-14422035	AT5G36700.2  CDS  gene_syn 2-PHOSPHOGLYCOLATE PHOSPHATASE 1, ATPGLP1, PGLP1  gene PGLP1  go_component chloroplast|GO:0009507|18431481|IDA  go_process metabolic process|GO:0008152||IEA  go_function phosphoglycolate phosphatase activity|GO:0008967|17478634|IMP  go_function phosphoglycolate phosphatase activity|GO:0008967||ISS  product PGLP1 (2-PHOSPHOGLYCOLATE PHOSPHATASE 1); phosphoglycolate phosphatase  note 2-PHOSPHOGLYCOLATE PHOSPHATASE 1 (PGLP1); FUNCTIONS IN: phosphoglycolate phosphatase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), HAD-superfamily hydrolase, subfamily IIA (InterPro:IPR006357), 2-phosphoglycolate phosphatase, eukaryotic (InterPro:IPR006349); BEST Arabidopsis thaliana protein match is: phosphoglycolate phosphatase, putative (TAIR:AT5G36790.2); Has 2803 Blast hits to 2801 proteins in 728 species: Archae - 70; Bacteria - 1283; Metazoa - 552; Fungi - 116; Plants - 65; Viruses - 0; Other Eukaryotes - 717 (source: NCBI BLink).  protein_id AT5G36700.2p  transcript_id AT5G36700.2  protein_id AT5G36700.2p  transcript_id AT5G36700.2  
At5g36710	chr5:014425491	0.0	C/14425491-14426042	AT5G36710.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36800.1); Has 56 Blast hits to 56 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36710.1p  transcript_id AT5G36710.1  protein_id AT5G36710.1p  transcript_id AT5G36710.1  
At5g36720	chr5:014429661	0.0	C/14429661-14429924	AT5G36720.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: pollen tube; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36805.1); Has 42 Blast hits to 42 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36720.1p  transcript_id AT5G36720.1  protein_id AT5G36720.1p  transcript_id AT5G36720.1  
At5g36722	chr5:014431914	0.0	C/14431914-14431982,14431599-14431718	AT5G36722.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36810.1); Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36722.1p  transcript_id AT5G36722.1  protein_id AT5G36722.1p  transcript_id AT5G36722.1  
At5g36730	chr5:014436317	0.0	W/14436317-14437549	AT5G36730.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G36820.1); Has 637 Blast hits to 608 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 635; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G36730.1p  transcript_id AT5G36730.1  protein_id AT5G36730.1p  transcript_id AT5G36730.1  
At5g36732	chr5:014443852	0.0	W/14443852-14446824	AT5G36732.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 4.2e-83 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At5g36734	chr5:014447373	0.0	W/14447373-14448214	AT5G36734.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G36830.1); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At5g36736	chr5:014448812	0.0	C/14448812-14449312	AT5G36736.1  mRNA_TE_gene  pseudo  function pseudogene of unknown protein  note Transposable element gene  
At5g36738	chr5:014449728	0.0	C/14449728-14450084	AT5G36738.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36661.1); Has 68 Blast hits to 65 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36738.1p  transcript_id AT5G36738.1  protein_id AT5G36738.1p  transcript_id AT5G36738.1  
At5g36739	chr5:014451918	0.0	C/14451918-14452274	AT5G36739.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36662.1); Has 68 Blast hits to 65 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36739.1p  transcript_id AT5G36739.1  protein_id AT5G36739.1p  transcript_id AT5G36739.1  
At5g36737	chr5:014455987	0.0	W/14455987-14458324	AT5G36737.1  mRNA_TE_gene  pseudo  gene_syn MPK17.1  note Transposable element gene, pseudogene, hypothetical protein  
At5g36740	chr5:014460790	0.0	W/14460790-14462829,14462915-14463041,14463127-14463239,14463341-14463579,14463721-14463807,14464205-14464304,14464795-14465008,14465108-14465727	AT5G36740.1  CDS  gene_syn MPK17.2  go_function DNA binding|GO:0003677||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product PHD finger family protein  note PHD finger family protein; FUNCTIONS IN: protein binding, DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: AT hook, DNA-binding, conserved site (InterPro:IPR017956), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT5G36670.1); Has 3520 Blast hits to 2946 proteins in 235 species: Archae - 0; Bacteria - 57; Metazoa - 2341; Fungi - 291; Plants - 332; Viruses - 20; Other Eukaryotes - 479 (source: NCBI BLink).  protein_id AT5G36740.1p  transcript_id AT5G36740.1  protein_id AT5G36740.1p  transcript_id AT5G36740.1  
At5g36770	chr5:014468357	0.0	C/14468357-14468437,14467658-14467843,14467022-14467183,14466886-14466939,14466672-14466791,14466102-14466500	AT5G36770.1  CDS  gene_syn F24C7.5  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36680.1); Has 22 Blast hits to 22 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36770.1p  transcript_id AT5G36770.1  protein_id AT5G36770.1p  transcript_id AT5G36770.1  
At5g36775	chr5:014472990	0.0	W/14472990-14473448	AT5G36775.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.8e-11 P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element)  
At5g36780	chr5:014476079	0.0	C/14476079-14476588,14475864-14475995,14475590-14475784,14475401-14475499,14474829-14475320,14474485-14474787	AT5G36780.1  CDS  gene_syn F5H8.2, F5H8_2  function AT5G36780 and AT5G36690 represent identical copies. The duplication within clone F27C7 is believed an artifact with only one true copy existing.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36690.1); Has 9966 Blast hits to 7092 proteins in 645 species: Archae - 50; Bacteria - 1152; Metazoa - 3929; Fungi - 769; Plants - 323; Viruses - 31; Other Eukaryotes - 3712 (source: NCBI BLink).  protein_id AT5G36780.1p  transcript_id AT5G36780.1  protein_id AT5G36780.1p  transcript_id AT5G36780.1  
At5g36790	chr5:014483469	0.0	C/14483469-14483730,14483045-14483112,14482829-14482921,14482675-14482746,14482500-14482571,14482336-14482395,14482190-14482242,14481961-14482058,14481651-14481750,14481437-14481540,14481229-14481335	AT5G36790.1  CDS  gene_syn F5H8.7, F5H8_7  go_component vacuole|GO:0005773|15539469|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity|GO:0016787||IEA  go_function phosphatase activity|GO:0016791||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_function phosphoglycolate phosphatase activity|GO:0008967||ISS  product phosphoglycolate phosphatase, putative  note phosphoglycolate phosphatase, putative; FUNCTIONS IN: hydrolase activity, phosphatase activity, phosphoglycolate phosphatase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: apoplast, nucleus, chloroplast stroma, vacuole, cytoplasm; EXPRESSED IN: fruit, guard cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), HAD-superfamily hydrolase, subfamily IIA (InterPro:IPR006357), 2-phosphoglycolate phosphatase, eukaryotic (InterPro:IPR006349); BEST Arabidopsis thaliana protein match is: PGLP1 (2-PHOSPHOGLYCOLATE PHOSPHATASE 1); phosphoglycolate phosphatase (TAIR:AT5G36700.2); Has 2803 Blast hits to 2801 proteins in 728 species: Archae - 70; Bacteria - 1283; Metazoa - 552; Fungi - 116; Plants - 65; Viruses - 0; Other Eukaryotes - 717 (source: NCBI BLink).  protein_id AT5G36790.1p  transcript_id AT5G36790.1  protein_id AT5G36790.1p  transcript_id AT5G36790.1  
At5g36790	chr5:014483469	0.0	C/14483469-14483730,14483045-14483112,14482829-14482921,14482675-14482746,14482500-14482571,14482336-14482395,14482190-14482242,14481961-14482058,14481651-14481750,14481437-14481540,14481229-14481335	AT5G36790.2  CDS  gene_syn F5H8.7, F5H8_7  go_component apoplast|GO:0048046|18538804|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity|GO:0016787||IEA  go_function phosphatase activity|GO:0016791||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_function phosphoglycolate phosphatase activity|GO:0008967||ISS  product phosphoglycolate phosphatase, putative  note phosphoglycolate phosphatase, putative; FUNCTIONS IN: hydrolase activity, phosphatase activity, phosphoglycolate phosphatase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: apoplast, nucleus, cytoplasm; EXPRESSED IN: guard cell, leaf; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), HAD-superfamily hydrolase, subfamily IIA (InterPro:IPR006357), 2-phosphoglycolate phosphatase, eukaryotic (InterPro:IPR006349); BEST Arabidopsis thaliana protein match is: PGLP1 (2-PHOSPHOGLYCOLATE PHOSPHATASE 1); phosphoglycolate phosphatase (TAIR:AT5G36700.2); Has 2803 Blast hits to 2801 proteins in 728 species: Archae - 70; Bacteria - 1283; Metazoa - 552; Fungi - 116; Plants - 65; Viruses - 0; Other Eukaryotes - 717 (source: NCBI BLink).  protein_id AT5G36790.2p  transcript_id AT5G36790.2  protein_id AT5G36790.2p  transcript_id AT5G36790.2  
At5g36800	chr5:014484791	0.0	C/14484791-14485342	AT5G36800.1  CDS  gene_syn F5H8.4, F5H8_4  go_component endomembrane system|GO:0012505||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36710.1); Has 56 Blast hits to 56 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36800.1p  transcript_id AT5G36800.1  protein_id AT5G36800.1p  transcript_id AT5G36800.1  
At5g36805	chr5:014488961	0.0	C/14488961-14489224	AT5G36805.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36720.1); Has 42 Blast hits to 42 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36805.1p  transcript_id AT5G36805.1  protein_id AT5G36805.1p  transcript_id AT5G36805.1  
At5g36810	chr5:014491214	0.0	C/14491214-14491282,14490899-14491018	AT5G36810.1  CDS  gene_syn F5H8.16, F5H8_16  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36722.1); Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36810.1p  transcript_id AT5G36810.1  protein_id AT5G36810.1p  transcript_id AT5G36810.1  
At5g36820	chr5:014495617	0.0	W/14495617-14496849	AT5G36820.1  CDS  gene_syn F5H8.6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G36730.1); Has 637 Blast hits to 608 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 635; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G36820.1p  transcript_id AT5G36820.1  protein_id AT5G36820.1p  transcript_id AT5G36820.1  
At5g36825	chr5:014503152	0.0	W/14503152-14506090	AT5G36825.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 4.2e-83 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At5g36830	chr5:014506673	0.0	W/14506673-14507514	AT5G36830.1  mRNA_TE_gene  pseudo  gene_syn F5H8.8  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G36734.1); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At5g36840	chr5:014508087	0.0	C/14508087-14510203	AT5G36840.1  mRNA_TE_gene  pseudo  gene_syn F5H8.10, F5H8_10  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G24380.1); similar to hypothetical protein 40.t00047 [Brassica oleracea] (GB:ABD65162.1); contains domain Hedgehog/intein (Hint) domain (SSF51294)  
At5g36850	chr5:014511170	0.0	C/14511170-14511865	AT5G36850.1  mRNA_TE_gene  pseudo  gene_syn F5H8.11, F5H8_11  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G27780.1); similar to hypothetical protein 40.t00047 [Brassica oleracea] (GB:ABD65162.1); contains InterPro domain Tetracyclin repressor-like, C-terminal; (InterPro:IPR011075)  
At5g36860	chr5:014512231	0.0	C/14512231-14517109	AT5G36860.1  mRNA_TE_gene  pseudo  gene_syn F5H8.3, F5H8_3  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G14770.2); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G27780.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G25886.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At5g36870	chr5:014518316	0.0	W/14518316-14518471,14518524-14518685,14518763-14518881,14518961-14519060,14519139-14519249,14519348-14519464,14520356-14520439,14520540-14520634,14520732-14520864,14521069-14521206,14521291-14521361,14521454-14521550,14521774-14521893,14521991-14522096,14526390-14526664,14526754-14526806,14526886-14526946,14527108-14527192,14527283-14527332,14527411-14527497,14527893-14528021,14528178-14528272,14528380-14528464,14528550-14528710,14528804-14528927,14529016-14529112,14529433-14529550,14529746-14529852,14529940-14530065,14530190-14530258,14530341-14530515,14530603-14530759,14530969-14531088,14531218-14531336,14531561-14531644,14531743-14531855,14531960-14532189,14532285-14533058,14533136-14533186,14533336-14533521,14533682-14533930	AT5G36870.1  CDS  gene_syn ATGSL09, F5H8.14, F5H8_14, atgsl9, glucan synthase-like 9, gsl09  gene ATGSL09  function encodes a gene similar to callose synthase  go_component membrane|GO:0016020|17432890|IDA  go_process 1,3-beta-glucan biosynthetic process|GO:0006075||IEA  go_component 1,3-beta-glucan synthase complex|GO:0000148||ISS  go_process 1,3-beta-glucan biosynthetic process|GO:0006075||ISS  go_function 1,3-beta-glucan synthase activity|GO:0003843||ISS  product ATGSL09 (glucan synthase-like 9); 1,3-beta-glucan synthase  note glucan synthase-like 9 (ATGSL09); FUNCTIONS IN: 1,3-beta-glucan synthase activity; INVOLVED IN: 1,3-beta-glucan biosynthetic process; LOCATED IN: 1,3-beta-glucan synthase complex, membrane; EXPRESSED IN: shoot apex, petal, flower, root, leaf; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 48 (InterPro:IPR003440); BEST Arabidopsis thaliana protein match is: ATGSL11 (glucan synthase-like 11); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups (TAIR:AT3G59100.1); Has 880 Blast hits to 593 proteins in 101 species: Archae - 2; Bacteria - 0; Metazoa - 2; Fungi - 530; Plants - 321; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT5G36870.1p  transcript_id AT5G36870.1  protein_id AT5G36870.1p  transcript_id AT5G36870.1  
At5g36880	chr5:014538908	0.0	C/14538908-14539084,14538653-14538796,14538398-14538553,14538179-14538301,14537915-14538083,14537739-14537821,14537538-14537639,14537370-14537458,14537191-14537281,14536903-14537016,14536637-14536713,14536473-14536551,14536323-14536391,14536038-14536213,14535827-14535883,14535634-14535724,14535262-14535360,14534961-14535146	AT5G36880.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_function catalytic activity|GO:0003824||IEA  go_function acetate-CoA ligase activity|GO:0003987||IEA  go_function AMP binding|GO:0016208||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_process metabolic process|GO:0008152||ISS  product acetyl-CoA synthetase, putative / acetate-CoA ligase, putative  note acetyl-CoA synthetase, putative / acetate-CoA ligase, putative; FUNCTIONS IN: acetate-CoA ligase activity, catalytic activity, AMP binding; INVOLVED IN: metabolic process; LOCATED IN: cytosol, chloroplast stroma, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acetate--CoA ligase (InterPro:IPR011904), AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AAE17 (ACYL-ACTIVATING ENZYME 17); catalytic/ ligase (TAIR:AT5G23050.1); Has 46895 Blast hits to 44065 proteins in 2053 species: Archae - 563; Bacteria - 24019; Metazoa - 2177; Fungi - 1582; Plants - 784; Viruses - 1; Other Eukaryotes - 17769 (source: NCBI BLink).  protein_id AT5G36880.1p  transcript_id AT5G36880.1  protein_id AT5G36880.1p  transcript_id AT5G36880.1  
At5g36880	chr5:014540237	0.0	C/14540237-14540296,14539928-14539980,14538908-14539121,14538653-14538796,14538398-14538553,14538179-14538301,14537915-14538083,14537739-14537821,14537538-14537639,14537370-14537458,14537191-14537281,14536903-14537016,14536637-14536713,14536473-14536551,14536323-14536391,14536038-14536213,14535827-14535883,14535634-14535724,14535262-14535360,14534961-14535146	AT5G36880.2  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_function catalytic activity|GO:0003824||IEA  go_function acetate-CoA ligase activity|GO:0003987||IEA  go_function AMP binding|GO:0016208||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_process metabolic process|GO:0008152||ISS  product acetyl-CoA synthetase, putative / acetate-CoA ligase, putative  note acetyl-CoA synthetase, putative / acetate-CoA ligase, putative; FUNCTIONS IN: acetate-CoA ligase activity, catalytic activity, AMP binding; INVOLVED IN: metabolic process; LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acetate--CoA ligase (InterPro:IPR011904), AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AAE17 (ACYL-ACTIVATING ENZYME 17); catalytic/ ligase (TAIR:AT5G23050.1); Has 47040 Blast hits to 44030 proteins in 2056 species: Archae - 563; Bacteria - 24200; Metazoa - 2177; Fungi - 1640; Plants - 785; Viruses - 1; Other Eukaryotes - 17674 (source: NCBI BLink).  protein_id AT5G36880.2p  transcript_id AT5G36880.2  protein_id AT5G36880.2p  transcript_id AT5G36880.2  
At5g36890	chr5:014545986	0.0	C/14545986-14546090,14545665-14545731,14545523-14545581,14545368-14545443,14544727-14544801,14544565-14544652,14544075-14544300,14543785-14543900,14543102-14543319,14542984-14543018,14542764-14542866,14542478-14542586,14542164-14542359	AT5G36890.1  CDS  gene_syn BETA GLUCOSIDASE 42, BGLU42, MLF18.1, MLF18_1  gene BGLU42  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process cellulose catabolic process|GO:0030245||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function beta-glucosidase activity|GO:0008422||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU42 (BETA GLUCOSIDASE 42); beta-glucosidase/ catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 42 (BGLU42); FUNCTIONS IN: cation binding, beta-glucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: cellulose catabolic process, carbohydrate metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1, beta-glucosidase (InterPro:IPR017736), Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU40 (BETA GLUCOSIDASE 40); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G26560.1); Has 5821 Blast hits to 5565 proteins in 799 species: Archae - 98; Bacteria - 3179; Metazoa - 610; Fungi - 134; Plants - 849; Viruses - 0; Other Eukaryotes - 951 (source: NCBI BLink).  protein_id AT5G36890.1p  transcript_id AT5G36890.1  protein_id AT5G36890.1p  transcript_id AT5G36890.1  
At5g36890	chr5:014545986	0.0	C/14545986-14546090,14545665-14545731,14545523-14545581,14545368-14545443,14544727-14544801,14544565-14544652,14544075-14544300,14543785-14543900,14543102-14543319,14542984-14543018,14542764-14542866,14542478-14542586,14542178-14542359,14541527-14541531	AT5G36890.2  CDS  gene_syn BETA GLUCOSIDASE 42, BGLU42, MLF18.1, MLF18_1  gene BGLU42  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process cellulose catabolic process|GO:0030245||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function beta-glucosidase activity|GO:0008422||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU42 (BETA GLUCOSIDASE 42); beta-glucosidase/ catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 42 (BGLU42); FUNCTIONS IN: cation binding, beta-glucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: cellulose catabolic process, carbohydrate metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1, beta-glucosidase (InterPro:IPR017736), Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU40 (BETA GLUCOSIDASE 40); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G26560.1); Has 5817 Blast hits to 5565 proteins in 799 species: Archae - 98; Bacteria - 3179; Metazoa - 606; Fungi - 134; Plants - 849; Viruses - 0; Other Eukaryotes - 951 (source: NCBI BLink).  protein_id AT5G36890.2p  transcript_id AT5G36890.2  protein_id AT5G36890.2p  transcript_id AT5G36890.2  
At5g36900	chr5:014546924	0.0	W/14546924-14547018,14547059-14547148,14548026-14548203	AT5G36900.1  CDS  gene_syn MLF18.2, MLF18_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G36900.1p  transcript_id AT5G36900.1  protein_id AT5G36900.1p  transcript_id AT5G36900.1  
At5g36903	chr5:014555138	0.0	W/14555138-14555523	AT5G36903.1  pseudogenic_transcript  pseudo  function pseudogene of protein related to self-incompatibility  
At5g36904	chr5:014556141	0.0	W/14556141-14556625	AT5G36904.1  pseudogenic_transcript  pseudo  function pseudogene of protein related to self-incompatibility  
At5g36905	chr5:014557798	0.0	W/14557798-14560184	AT5G36905.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to reverse transcriptase-related [Arabidopsis thaliana] (TAIR:AT4G12275.1); similar to Ribonuclease H [Medicago truncatula] (GB:ABD28505.1); contains InterPro domain Ribonuclease H; (InterPro:IPR002156); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)  
At5g36910	chr5:014562445	0.0	C/14562445-14562673,14562265-14562342,14562053-14562150	AT5G36910.1  CDS  gene_syn MLF18.30, MLF18_30, THI2.2, THIONIN 2.2  gene THI2.2  function Encodes a thionin that is expressed at a low basal level in seedlings and shows circadian variation. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952|18674922|ISS  go_function toxin receptor binding|GO:0050827|8552715|TAS  product THI2.2 (THIONIN 2.2); toxin receptor binding  note THIONIN 2.2 (THI2.2); FUNCTIONS IN: toxin receptor binding; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Thionin (InterPro:IPR001010); BEST Arabidopsis thaliana protein match is: thionin, putative (TAIR:AT1G66100.1); Has 132 Blast hits to 132 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36910.1p  transcript_id AT5G36910.1  protein_id AT5G36910.1p  transcript_id AT5G36910.1  
At5g36920	chr5:014564881	0.0	C/14564881-14564971,14564392-14564549	AT5G36920.1  CDS  gene_syn MLF18.6, MLF18_6  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36925.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36920.1p  transcript_id AT5G36920.1  protein_id AT5G36920.1p  transcript_id AT5G36920.1  
At5g36925	chr5:014566203	0.0	C/14566203-14566239,14565963-14566117	AT5G36925.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36920.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36925.1p  transcript_id AT5G36925.1  protein_id AT5G36925.1p  transcript_id AT5G36925.1  
At5g36930	chr5:014571429	0.0	C/14571429-14571907,14570220-14571306,14569845-14570120,14568856-14569770,14568151-14568761,14568000-14568059,14567771-14567909	AT5G36930.1  CDS  gene_syn MLF18.50, MLF18_50  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, protein binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G17680.1); Has 20616 Blast hits to 15093 proteins in 543 species: Archae - 25; Bacteria - 1324; Metazoa - 3559; Fungi - 111; Plants - 14876; Viruses - 4; Other Eukaryotes - 717 (source: NCBI BLink).  protein_id AT5G36930.1p  transcript_id AT5G36930.1  protein_id AT5G36930.1p  transcript_id AT5G36930.1  
At5g36930	chr5:014571429	0.0	C/14571429-14571916,14570220-14571306,14569845-14570120,14568856-14569770,14568151-14568761,14568000-14568059,14567771-14567909	AT5G36930.2  CDS  gene_syn MLF18.50, MLF18_50  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, protein binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G17680.1); Has 20829 Blast hits to 15249 proteins in 546 species: Archae - 25; Bacteria - 1319; Metazoa - 3573; Fungi - 114; Plants - 15065; Viruses - 4; Other Eukaryotes - 729 (source: NCBI BLink).  protein_id AT5G36930.2p  transcript_id AT5G36930.2  protein_id AT5G36930.2p  transcript_id AT5G36930.2  
At5g36935	chr5:014574600	0.0	W/14574600-14584700	AT5G36935.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 9.5e-51 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At5g36937	chr5:014586128	0.0	C/14586128-14586835	AT5G36937.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 7.2e-09 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At5g36940	chr5:014590330	0.0	W/14590330-14590453,14590714-14590915,14591044-14591128,14591523-14591663,14591757-14591875,14591958-14592054,14592131-14592303,14592396-14592462,14592600-14592758,14592858-14592938,14593118-14593244,14593381-14593489,14593600-14593712,14593817-14593892,14593981-14594137	AT5G36940.1  CDS  gene_syn CAT3, CATIONIC AMINO ACID TRANSPORTER 3, MLF18.60, MLF18_60  gene CAT3  function Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Does not mediate efficient uptake of basic amino acids in yeast or Xenopus systems but can transport neutral and acidic amino acid analogs.  go_component mitochondrion|GO:0005739||IEA  go_component membrane|GO:0016020||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process transport|GO:0006810||IEA  go_process amino acid transport|GO:0006865||IEA  go_function basic amino acid transmembrane transporter activity|GO:0015174|15377779|IGI  go_function cationic amino acid transmembrane transporter activity|GO:0015326||ISS  product CAT3 (CATIONIC AMINO ACID TRANSPORTER 3); basic amino acid transmembrane transporter/ cationic amino acid transmembrane transporter  note CATIONIC AMINO ACID TRANSPORTER 3 (CAT3); FUNCTIONS IN: basic amino acid transmembrane transporter activity, cationic amino acid transmembrane transporter activity; INVOLVED IN: transport, amino acid transport, N-terminal protein myristoylation; LOCATED IN: mitochondrion, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cationic amino acid transporter (InterPro:IPR015606), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease-associated region (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: CAT2 (CATIONIC AMINO ACID TRANSPORTER 2); amino acid transmembrane transporter (TAIR:AT1G58030.1); Has 20347 Blast hits to 19386 proteins in 1312 species: Archae - 351; Bacteria - 14517; Metazoa - 1791; Fungi - 2139; Plants - 295; Viruses - 0; Other Eukaryotes - 1254 (source: NCBI BLink).  protein_id AT5G36940.1p  transcript_id AT5G36940.1  protein_id AT5G36940.1p  transcript_id AT5G36940.1  
At5g36950	chr5:014594992	0.0	W/14594992-14595418,14595501-14595746,14596179-14596374,14596649-14596908,14596992-14597119,14597237-14597440,14597663-14597713,14597968-14598216	AT5G36950.1  CDS  gene_syn DegP protease 10, DegP10, MLF18.70, MLF18_70  gene DegP10  function Encodes a putative DegP protease.  go_process proteolysis|GO:0006508||IEA  go_function catalytic activity|GO:0003824||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function protein binding|GO:0005515||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type peptidase activity|GO:0008236||ISS  product DegP10 (DegP protease 10); catalytic/ protein binding / serine-type endopeptidase/ serine-type peptidase  note DegP protease 10 (DegP10); FUNCTIONS IN: serine-type peptidase activity, protein binding, catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Serine endopeptidase DegP2 (InterPro:IPR015724), Peptidase, trypsin-like serine and cysteine (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1 and S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DegP3 (DegP protease 3); catalytic/ protein binding / serine-type endopeptidase/ serine-type peptidase (TAIR:AT1G65630.1); Has 9047 Blast hits to 9038 proteins in 1348 species: Archae - 52; Bacteria - 5463; Metazoa - 204; Fungi - 1; Plants - 184; Viruses - 0; Other Eukaryotes - 3143 (source: NCBI BLink).  protein_id AT5G36950.1p  transcript_id AT5G36950.1  protein_id AT5G36950.1p  transcript_id AT5G36950.1  
At5g36960	chr5:014598745	0.0	W/14598745-14598934,14599506-14599729	AT5G36960.1  CDS  gene_syn MLF18.14, MLF18_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, seed; EXPRESSED DURING: D bilateral stage, E expanded cotyledon stage; Has 8 Blast hits to 8 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36960.1p  transcript_id AT5G36960.1  protein_id AT5G36960.1p  transcript_id AT5G36960.1  
At5g36970	chr5:014604744	0.0	C/14604744-14605194,14604367-14604662	AT5G36970.1  CDS  gene_syn MLF18.15, MLF18_15, NDR1/HIN1-LIKE 25, NHL25  gene NHL25  function NDR1/HIN1-like protein, expression induced during incompatible response to a pathogen, expression is at least partly dependent on the salicylic acid signaling pathway  go_component cellular_component|GO:0005575||ND  go_process defense response, incompatible interaction|GO:0009814|12059109|IEP  go_process salicylic acid mediated signaling pathway|GO:0009863|12059109|IEP  go_function molecular_function|GO:0003674||ND  product NHL25 (NDR1/HIN1-LIKE 25)  note NDR1/HIN1-LIKE 25 (NHL25); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: salicylic acid mediated signaling pathway, defense response, incompatible interaction; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: harpin-induced protein-related / HIN1-related / harpin-responsive protein-related (TAIR:AT1G65690.1); Has 677 Blast hits to 676 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 677; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36970.1p  transcript_id AT5G36970.1  protein_id AT5G36970.1p  transcript_id AT5G36970.1  
At5g36980	chr5:014607581	0.0	C/14607581-14607754,14607273-14607378,14606980-14607161	AT5G36980.1  CDS  gene_syn MLF18.16, MLF18_16  go_component small-subunit processome|GO:0032040||IEA  go_process rRNA processing|GO:0006364||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: small-subunit processome; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp14 (InterPro:IPR006709); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02400.1); Has 12 Blast hits to 12 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G36980.1p  transcript_id AT5G36980.1  protein_id AT5G36980.1p  transcript_id AT5G36980.1  
At5g36990	chr5:014614926	0.0	C/14614926-14616135	AT5G36990.1  mRNA_TE_gene  pseudo  gene_syn MLF18.110, MLF18_110  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 8.5e-61 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At5g37000	chr5:014618107	0.0	W/14618107-14618625,14618733-14618863,14619059-14619446,14619542-14619867,14619956-14620223,14620271-14620282	AT5G37000.1  CDS  gene_syn K15O15.2, K15O15_2  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product exostosin family protein  note exostosin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: exostosin family protein (TAIR:AT4G32790.1); Has 790 Blast hits to 785 proteins in 90 species: Archae - 0; Bacteria - 12; Metazoa - 227; Fungi - 6; Plants - 477; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT5G37000.1p  transcript_id AT5G37000.1  protein_id AT5G37000.1p  transcript_id AT5G37000.1  
At5g37010	chr5:014621815	0.0	C/14621815-14622879,14620853-14621701	AT5G37010.1  CDS  gene_syn K15O15.3, K15O15_3  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65710.1); Has 6220 Blast hits to 4682 proteins in 319 species: Archae - 5; Bacteria - 344; Metazoa - 3406; Fungi - 489; Plants - 297; Viruses - 48; Other Eukaryotes - 1631 (source: NCBI BLink).  protein_id AT5G37010.1p  transcript_id AT5G37010.1  protein_id AT5G37010.1p  transcript_id AT5G37010.1  
At5g37017	chr5:014628221	0.0	C/14628221-14628847	AT5G37017.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G16486  
At5g37020	chr5:014630151	0.0	W/14630151-14630193,14630278-14630387,14630477-14630575,14630682-14630738,14630815-14630970,14631064-14631148,14631430-14631520,14631592-14631756,14631841-14631963,14632076-14632151,14632280-14632427,14632660-14633633,14633722-14633912,14633989-14634106	AT5G37020.1  CDS  gene_syn ARF8, ATARF8, AUXIN RESPONSE FACTOR 8, K15O15.1, K15O15_1  gene ARF8  function Encodes a member of the auxin response factor family. Mediates auxin response via expression of auxin regulated genes. Acts redundantly with ARF6 to control stamen elongation and flower maturation. Expression of ARF8 is controlled by miR167.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10318972|TAS  go_process response to auxin stimulus|GO:0009733|16107481|IMP  go_process flower development|GO:0009908|16107481|IGI  go_process fruit development|GO:0010154|16829592|IMP  go_function transcription factor activity|GO:0003700|10476078|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ARF8 (AUXIN RESPONSE FACTOR 8); transcription factor  note AUXIN RESPONSE FACTOR 8 (ARF8); FUNCTIONS IN: transcription factor activity; INVOLVED IN: flower development, response to auxin stimulus, fruit development, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: ARF6 (AUXIN RESPONSE FACTOR 6); transcription factor (TAIR:AT1G30330.1); Has 6526 Blast hits to 3742 proteins in 250 species: Archae - 0; Bacteria - 141; Metazoa - 2017; Fungi - 426; Plants - 1398; Viruses - 22; Other Eukaryotes - 2522 (source: NCBI BLink).  protein_id AT5G37020.1p  transcript_id AT5G37020.1  protein_id AT5G37020.1p  transcript_id AT5G37020.1  
At5g37020	chr5:014630151	0.0	W/14630151-14630193,14630278-14630387,14630477-14630575,14630682-14630738,14630815-14630970,14631064-14631148,14631430-14631520,14631592-14631756,14631841-14631963,14632076-14632151,14632280-14632427,14632660-14633633,14633722-14633916	AT5G37020.2  CDS  gene_syn ARF8, ATARF8, AUXIN RESPONSE FACTOR 8, K15O15.1, K15O15_1  gene ARF8  function Encodes a member of the auxin response factor family. Mediates auxin response via expression of auxin regulated genes. Acts redundantly with ARF6 to control stamen elongation and flower maturation. Expression of ARF8 is controlled by miR167.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10318972|TAS  go_process response to auxin stimulus|GO:0009733|16107481|IMP  go_process flower development|GO:0009908|16107481|IGI  go_process fruit development|GO:0010154|16829592|IMP  go_function transcription factor activity|GO:0003700|10476078|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ARF8 (AUXIN RESPONSE FACTOR 8); transcription factor  note AUXIN RESPONSE FACTOR 8 (ARF8); FUNCTIONS IN: transcription factor activity; INVOLVED IN: flower development, response to auxin stimulus, fruit development, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: ARF6 (AUXIN RESPONSE FACTOR 6); transcription factor (TAIR:AT1G30330.1); Has 6097 Blast hits to 3455 proteins in 236 species: Archae - 0; Bacteria - 141; Metazoa - 1967; Fungi - 419; Plants - 1098; Viruses - 22; Other Eukaryotes - 2450 (source: NCBI BLink).  protein_id AT5G37020.2p  transcript_id AT5G37020.2  protein_id AT5G37020.2p  transcript_id AT5G37020.2  
At5g37030	chr5:014636850	0.0	C/14636850-14636939,14636361-14636763,14636254-14636300,14635673-14636163,14635117-14635586,14634614-14635029	AT5G37030.1  CDS  gene_syn K15O15.6, K15O15_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product tRNA-splicing endonuclease positive effector-related  note tRNA-splicing endonuclease positive effector-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G37150.1); Has 3476 Blast hits to 3348 proteins in 549 species: Archae - 115; Bacteria - 721; Metazoa - 1051; Fungi - 591; Plants - 335; Viruses - 11; Other Eukaryotes - 652 (source: NCBI BLink).  protein_id AT5G37030.1p  transcript_id AT5G37030.1  protein_id AT5G37030.1p  transcript_id AT5G37030.1  
At5g37040	chr5:014639135	0.0	W/14639135-14639476,14639548-14639934	AT5G37040.1  CDS  gene_syn MJG14.2, MJG14_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, LP.10 ten leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G58090.1); Has 366 Blast hits to 302 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 366; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G37040.1p  transcript_id AT5G37040.1  protein_id AT5G37040.1p  transcript_id AT5G37040.1  
At5g37050	chr5:014641281	0.0	C/14641281-14641421,14641025-14641163,14640873-14640943,14640510-14640656	AT5G37050.1  CDS  gene_syn MJG14.3  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: SNX2a (SORTING NEXIN 2a); phosphoinositide binding (TAIR:AT5G58440.1); Has 23 Blast hits to 19 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G37050.1p  transcript_id AT5G37050.1  protein_id AT5G37050.1p  transcript_id AT5G37050.1  
At5g37055	chr5:014642289	0.0	C/14642289-14642387,14642105-14642210,14641912-14642018,14641634-14641837	AT5G37055.1  CDS  gene_syn ATSWC6, SEF, SERRATED LEAVES AND EARLY FLOWERING  gene SEF  function Encodes SERRATED LEAVES AND EARLY FLOWERING (SEF), an Arabidopsis homolog of the yeast SWC6 protein, a conserved subunit of the SWR1/SRCAP complex. SEF loss-of-function mutants have a pleiotropic phenotype characterized by serrated leaves, frequent absence of inflorescence internodes, bushy aspect, and flowers with altered number and size of organs. sef plants flower earlier than wild-type plants both under inductive and non-inductive photoperiods. SEF, ARP6 and PIE1 might form a molecular complex in Arabidopsis related to the SWR1/SRCAP complex identified in other eukaryotes.  go_component nucleus|GO:0005634|17470967|IDA  go_process regulation of flower development|GO:0009909|17470967|IMP  go_process defense response to bacterium|GO:0042742|17988222|IGI  go_process regulation of developmental growth|GO:0048638|17470967|IMP  product SEF (SERRATED LEAVES AND EARLY FLOWERING)  note SERRATED LEAVES AND EARLY FLOWERING (SEF); INVOLVED IN: defense response to bacterium, regulation of developmental growth, regulation of flower development; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529); Has 193 Blast hits to 193 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 88; Fungi - 54; Plants - 23; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT5G37055.1p  transcript_id AT5G37055.1  protein_id AT5G37055.1p  transcript_id AT5G37055.1  
At5g37060	chr5:014645118	0.0	C/14645118-14645414,14642741-14645023	AT5G37060.1  CDS  gene_syn ATCHX24, CATION/H+ EXCHANGER 24, CHX24, MJG14.5, MJG14_5  gene ATCHX24  function member of Putative Na+/H+ antiporter family  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|IC  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product ATCHX24; monovalent cation:proton antiporter/ sodium:hydrogen antiporter  note ATCHX24; FUNCTIONS IN: monovalent cation:proton antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: ATCHX25; monovalent cation:proton antiporter/ sodium:hydrogen antiporter (TAIR:AT5G58460.1); Has 3430 Blast hits to 3418 proteins in 966 species: Archae - 156; Bacteria - 2541; Metazoa - 4; Fungi - 89; Plants - 247; Viruses - 0; Other Eukaryotes - 393 (source: NCBI BLink).  protein_id AT5G37060.1p  transcript_id AT5G37060.1  protein_id AT5G37060.1p  transcript_id AT5G37060.1  
At5g37070	chr5:014651091	0.0	W/14651091-14651177,14651624-14651678,14651777-14652147	AT5G37070.1  CDS  gene_syn MJG14.7, MJG14_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G08890.2); Has 322 Blast hits to 320 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 321; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G37070.1p  transcript_id AT5G37070.1  protein_id AT5G37070.1p  transcript_id AT5G37070.1  
At5g37072	chr5:014652750	0.0	C/14652750-14653818	AT5G37072.1  pseudogenic_transcript  pseudo  function pseudogene of unknown protein  
At5g37080	chr5:014659133	0.0	W/14659133-14662408	AT5G37080.1  mRNA_TE_gene  pseudo  gene_syn MJG14.6, MJG14_6  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05090.1); similar to hypothetical protein 31.t00031 [Brassica oleracea] (GB:ABD65118.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At5g37090	chr5:014663637	0.0	W/14663637-14664299	AT5G37090.1  mRNA_TE_gene  pseudo  gene_syn MJG14.11, MJG14_11  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05087.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At5g37100	chr5:014664936	0.0	W/14664936-14666217	AT5G37100.1  mRNA_TE_gene  pseudo  gene_syn MJG14.12, MJG14_12  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05084.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At5g37110	chr5:014669594	0.0	W/14669594-14674913	AT5G37110.1  mRNA_TE_gene  pseudo  gene_syn MJG14.16, MJG14_16  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13250.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05080.1); similar to AT hook motif-containing protein-related [Arabidopsis thaliana] (TAIR:AT3G42100.1); similar to hypothetical protein 27.t00039 [Brassica oleracea] (GB:ABD65060.1); similar to hypothetical protein 31.t00030 [Brassica oleracea] (GB:ABD65117.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE80108.1); contains InterPro domain Herpes helicase; (InterPro:IPR003840); contains InterPro domain Protein of unknown function DUF889, eukaryote; (InterPro:IPR010285)  
At5g37120	chr5:014677666	0.0	W/14677666-14677962	AT5G37120.1  mRNA_TE_gene  pseudo  gene_syn MJG14.15, MJG14_15  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G18420.1)  
At5g37125	chr5:014678341	0.0	C/14678341-14680737	AT5G37125.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 8.0e-35 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At5g37130	chr5:014681455	0.0	W/14681455-14681843,14681950-14682088,14682258-14682589,14682823-14682904,14682982-14683243,14683478-14683536,14683676-14683765,14683901-14683992,14684083-14684181,14684300-14684377,14684577-14684661,14684741-14684799,14684927-14684996,14685132-14685223,14685385-14685447,14685528-14685594,14685703-14685897,14685970-14686086,14686169-14686321,14686419-14686529	AT5G37130.1  CDS  gene_syn MJG14.18, MJG14_18  go_component apoplast|GO:0048046|18538804|IDA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT5G17270.1); Has 4350 Blast hits to 3085 proteins in 450 species: Archae - 403; Bacteria - 1502; Metazoa - 403; Fungi - 227; Plants - 123; Viruses - 0; Other Eukaryotes - 1692 (source: NCBI BLink).  protein_id AT5G37130.1p  transcript_id AT5G37130.1  protein_id AT5G37130.1p  transcript_id AT5G37130.1  
At5g37140	chr5:014690436	0.0	W/14690436-14690579,14690732-14691874,14691963-14692275,14692373-14692851	AT5G37140.1  CDS  gene_syn MJG14.20, MJG14_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product tRNA-splicing endonuclease positive effector-related  note tRNA-splicing endonuclease positive effector-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: tRNA-splicing endonuclease positive effector-related (TAIR:AT5G52090.1); Has 4213 Blast hits to 3478 proteins in 592 species: Archae - 127; Bacteria - 828; Metazoa - 1280; Fungi - 816; Plants - 341; Viruses - 60; Other Eukaryotes - 761 (source: NCBI BLink).  protein_id AT5G37140.1p  transcript_id AT5G37140.1  protein_id AT5G37140.1p  transcript_id AT5G37140.1  
At5g37145	chr5:014694503	0.0	W/14694503-14696107	AT5G37145.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 4.9e-29 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At5g37150	chr5:014701330	0.0	W/14701330-14701419,14701511-14702011,14702467-14703588,14703671-14703995,14704081-14704562	AT5G37150.1  CDS  gene_syn MJG14.22, MJG14_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: tRNA-splicing endonuclease positive effector-related (TAIR:AT5G52090.1); Has 4236 Blast hits to 3442 proteins in 554 species: Archae - 133; Bacteria - 787; Metazoa - 1285; Fungi - 856; Plants - 359; Viruses - 41; Other Eukaryotes - 775 (source: NCBI BLink).  protein_id AT5G37150.1p  transcript_id AT5G37150.1  protein_id AT5G37150.1p  transcript_id AT5G37150.1  
At5g37160	chr5:014705426	0.0	W/14705426-14705542,14705622-14706149,14706259-14706951,14707019-14707817,14707898-14708376	AT5G37160.1  CDS  gene_syn MJG14.23, MJG14_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product tRNA-splicing endonuclease positive effector-related  note tRNA-splicing endonuclease positive effector-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, D bilateral stage, LP.12 twelve leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G37150.1); Has 3994 Blast hits to 3372 proteins in 559 species: Archae - 131; Bacteria - 754; Metazoa - 1223; Fungi - 780; Plants - 327; Viruses - 60; Other Eukaryotes - 719 (source: NCBI BLink).  protein_id AT5G37160.1p  transcript_id AT5G37160.1  protein_id AT5G37160.1p  transcript_id AT5G37160.1  
At5g37170	chr5:014712811	0.0	W/14712811-14712948,14713010-14713198,14713451-14713763,14713839-14713903,14714004-14714303	AT5G37170.1  CDS  gene_syn MJG14.10, MJG14_10  go_component cytosol|GO:0005829|9484457|TAS  go_process lignin biosynthetic process|GO:0009809|7770534|ISS  go_function O-methyltransferase activity|GO:0008171|7770534|ISS  product O-methyltransferase family 2 protein  note O-methyltransferase family 2 protein; FUNCTIONS IN: O-methyltransferase activity; INVOLVED IN: lignin biosynthetic process; LOCATED IN: cytosol; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family 2 protein (TAIR:AT1G77520.1); Has 1833 Blast hits to 1831 proteins in 364 species: Archae - 0; Bacteria - 479; Metazoa - 71; Fungi - 286; Plants - 911; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT5G37170.1p  transcript_id AT5G37170.1  protein_id AT5G37170.1p  transcript_id AT5G37170.1  
At5g37175	chr5:014715702	0.0	C/14715702-14716470	AT5G37175.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to nucleic acid binding / ribonuclease H [Arabidopsis thaliana] (TAIR:AT2G15750.1); similar to 80C09_17 [Brassica rapa subsp. pekinensis] (GB:AAZ41828.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)  
At5g37180	chr5:014718238	0.0	W/14718238-14718456,14719014-14719165,14719247-14719430,14719873-14719991,14720196-14720508,14720673-14720846,14720952-14721068,14721163-14721329,14721430-14721654,14721828-14722394,14722477-14722615,14722688-14722773,14722865-14722913	AT5G37180.1  CDS  gene_syn ATSUS5, MJG14.14, MJG14_14, SUS5  gene SUS5  function Encodes a protein with sucrose synthase activity (SUS5).  go_process sucrose metabolic process|GO:0005985||IEA  go_process biosynthetic process|GO:0009058||IEA  go_component cellular_component|GO:0005575||ND  go_process sucrose biosynthetic process|GO:0005986||ISS  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function sucrose synthase activity|GO:0016157|17257168|IDA  go_function sucrose synthase activity|GO:0016157||ISS  product SUS5; UDP-glycosyltransferase/ sucrose synthase  note SUS5; FUNCTIONS IN: UDP-glycosyltransferase activity, sucrose synthase activity; INVOLVED IN: sucrose biosynthetic process, biosynthetic process, sucrose metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sucrose synthase, plants and cyanobacteria (InterPro:IPR012820), Sucrose synthase (InterPro:IPR000368), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: SUS6 (SUCROSE SYNTHASE 6); UDP-glycosyltransferase/ sucrose synthase (TAIR:AT1G73370.1); Has 4756 Blast hits to 4750 proteins in 904 species: Archae - 184; Bacteria - 2381; Metazoa - 73; Fungi - 47; Plants - 492; Viruses - 0; Other Eukaryotes - 1579 (source: NCBI BLink).  protein_id AT5G37180.1p  transcript_id AT5G37180.1  protein_id AT5G37180.1p  transcript_id AT5G37180.1  
At5g37190	chr5:014726577	0.0	C/14726577-14726694,14726380-14726447,14725846-14726296,14725535-14725744,14725148-14725429,14723701-14725029,14723593-14723620,14723362-14723506	AT5G37190.1  CDS  gene_syn CIP4, COP1-interacting protein 4, MJG14.24, MJG14_24  gene CIP4  function COP1-interacting protein 4, a nuclear-localized positive regulator of arabidopsis photomorphogenesis  go_component nucleus|GO:0005634|11226193|IDA  go_process photomorphogenesis|GO:0009640|11226193|IMP  go_function transcription cofactor activity|GO:0003712|11226193|IDA  product CIP4 (COP1-interacting protein 4); transcription cofactor  note COP1-interacting protein 4 (CIP4); FUNCTIONS IN: transcription cofactor activity; INVOLVED IN: photomorphogenesis; LOCATED IN: nucleus; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: CIP4.1 (TAIR:AT4G00930.1); Has 19244 Blast hits to 13426 proteins in 860 species: Archae - 60; Bacteria - 2734; Metazoa - 6213; Fungi - 1668; Plants - 561; Viruses - 102; Other Eukaryotes - 7906 (source: NCBI BLink).  protein_id AT5G37190.1p  transcript_id AT5G37190.1  protein_id AT5G37190.1p  transcript_id AT5G37190.1  
At5g37200	chr5:014727832	0.0	W/14727832-14728485	AT5G37200.1  CDS  gene_syn MSK20.3, MSK20_3  go_function transcription factor activity|GO:0003700||ISS  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, transferase activity, transferring glycosyl groups, transcription factor activity, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G37270.1); Has 5327 Blast hits to 5317 proteins in 205 species: Archae - 0; Bacteria - 0; Metazoa - 1733; Fungi - 377; Plants - 2330; Viruses - 30; Other Eukaryotes - 857 (source: NCBI BLink).  protein_id AT5G37200.1p  transcript_id AT5G37200.1  protein_id AT5G37200.1p  transcript_id AT5G37200.1  
At5g37210	chr5:014729552	0.0	C/14729552-14731382,14729225-14729271	AT5G37210.1  CDS  gene_syn MSK20.1, MSK20_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, root; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT4G26380.1); Has 1181 Blast hits to 480 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1176; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G37210.1p  transcript_id AT5G37210.1  protein_id AT5G37210.1p  transcript_id AT5G37210.1  
At5g37211	chr5:014731405	0.0	C/14731405-14731578	AT5G37211.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G37211.1p  transcript_id AT5G37211.1  protein_id AT5G37211.1p  transcript_id AT5G37211.1  
At5g37220	chr5:014733877	0.0	W/14733877-14734521	AT5G37220.1  CDS  gene_syn MNJ8.1, MNJ8_1  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G37230.1); Has 38 Blast hits to 38 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G37220.1p  transcript_id AT5G37220.1  protein_id AT5G37220.1p  transcript_id AT5G37220.1  
At5g37230	chr5:014735154	0.0	W/14735154-14735780	AT5G37230.1  CDS  gene_syn MNJ8.2, MNJ8_2  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function transcription factor activity|GO:0003700||ISS  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, transcription factor activity, zinc ion binding; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G37270.1); Has 6108 Blast hits to 6089 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 2180; Fungi - 392; Plants - 2461; Viruses - 41; Other Eukaryotes - 1034 (source: NCBI BLink).  protein_id AT5G37230.1p  transcript_id AT5G37230.1  protein_id AT5G37230.1p  transcript_id AT5G37230.1  
At5g37240	chr5:014739212	0.0	C/14739212-14739256,14739011-14739123,14738740-14738749,14738507-14738581,14738085-14738116,14737902-14737976,14737785-14737820,14737560-14737650	AT5G37240.1  CDS  gene_syn MNJ8.30, MNJ8_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G37240.1p  transcript_id AT5G37240.1  protein_id AT5G37240.1p  transcript_id AT5G37240.1  
At5g37250	chr5:014750393	0.0	W/14750393-14750971	AT5G37250.1  CDS  gene_syn MNJ8.3, MNJ8_3  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function transcription factor activity|GO:0003700||ISS  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, transcription factor activity, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G37230.1); Has 6241 Blast hits to 6226 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 2272; Fungi - 421; Plants - 2433; Viruses - 42; Other Eukaryotes - 1073 (source: NCBI BLink).  protein_id AT5G37250.1p  transcript_id AT5G37250.1  protein_id AT5G37250.1p  transcript_id AT5G37250.1  
At5g37260	chr5:014752961	0.0	C/14752961-14752972,14752438-14752500,14752237-14752348,14752044-14752105,14751344-14751958	AT5G37260.1  CDS  gene_syn CIR1, CIRCADIAN 1, MNJ8.4, MNJ8_4, REVEILLE 2, RVE2  gene RVE2  function Encodes a MYB family transcription factor Circadian 1 (CIR1). Involved in circadian regulation in Arabidopsis.  go_process circadian rhythm|GO:0007623|17587236|IEP  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process seed germination|GO:0009845|17587236|IMP  go_process regulation of flower development|GO:0009909|17587236|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product RVE2 (REVEILLE 2); DNA binding / transcription factor  note REVEILLE 2 (RVE2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 11 processes; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT5G17300.1); Has 706 Blast hits to 702 proteins in 77 species: Archae - 0; Bacteria - 2; Metazoa - 33; Fungi - 6; Plants - 580; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT5G37260.1p  transcript_id AT5G37260.1  protein_id AT5G37260.1p  transcript_id AT5G37260.1  
At5g37270	chr5:014757933	0.0	C/14757933-14758559	AT5G37270.1  CDS  gene_syn MNJ8.6, MNJ8_6  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function transcription factor activity|GO:0003700||ISS  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, transcription factor activity, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G37230.1); Has 6159 Blast hits to 6141 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 2212; Fungi - 426; Plants - 2422; Viruses - 40; Other Eukaryotes - 1059 (source: NCBI BLink).  protein_id AT5G37270.1p  transcript_id AT5G37270.1  protein_id AT5G37270.1p  transcript_id AT5G37270.1  
At5g37280	chr5:014761275	0.0	C/14761275-14761925	AT5G37280.1  CDS  gene_syn MNJ8.7, MNJ8_7  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G37200.1); Has 2955 Blast hits to 2954 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 827; Fungi - 228; Plants - 1360; Viruses - 16; Other Eukaryotes - 524 (source: NCBI BLink).  protein_id AT5G37280.1p  transcript_id AT5G37280.1  protein_id AT5G37280.1p  transcript_id AT5G37280.1  
At5g37290	chr5:014762730	0.0	W/14762730-14762801,14762884-14762920,14763368-14763441,14763545-14763638,14763751-14763833,14763915-14764097	AT5G37290.1  CDS  gene_syn MNJ8.8, MNJ8_8  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product armadillo/beta-catenin repeat family protein  note armadillo/beta-catenin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); Has 106 Blast hits to 106 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 92; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G37290.1p  transcript_id AT5G37290.1  protein_id AT5G37290.1p  transcript_id AT5G37290.1  
At5g37290	chr5:014762730	0.0	W/14762730-14762801,14762887-14762920,14763368-14763441,14763545-14763638,14763751-14763833,14763915-14764097	AT5G37290.2  CDS  gene_syn MNJ8.8, MNJ8_8  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product armadillo/beta-catenin repeat family protein  note armadillo/beta-catenin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); Has 223 Blast hits to 223 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 207; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G37290.2p  transcript_id AT5G37290.2  protein_id AT5G37290.2p  transcript_id AT5G37290.2  
At5g37300	chr5:014767514	0.0	W/14767514-14767711,14768009-14768581,14768671-14768737,14769154-14769245,14769338-14769547,14769644-14769781,14769891-14770058	AT5G37300.1  CDS  gene_syn MNJ8.9, MNJ8_9, WSD1  gene WSD1  function Encodes a bifunctional enzyme, wax ester synthase (WS) and diacylglycerol acyltransferase (DGAT). In vitro assay indicated a ratio of 10.9 between its WS and DGAT activities. Both mutant and in vivo expression/analysis in yeast studies indicated a role in wax biosynthesis.  go_component endoplasmic reticulum|GO:0005783|18621978|IDA  go_process wax biosynthetic process|GO:0010025|18621978|IMP  go_function diacylglycerol O-acyltransferase activity|GO:0004144|18621978|IDA  go_function long-chain-alcohol O-fatty-acyltransferase activity|GO:0047196|18621978|IDA  product WSD1; diacylglycerol O-acyltransferase/ long-chain-alcohol O-fatty-acyltransferase  note WSD1; FUNCTIONS IN: diacylglycerol O-acyltransferase activity, long-chain-alcohol O-fatty-acyltransferase activity; INVOLVED IN: wax biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1298 (InterPro:IPR009721), Uncharacterised protein family UPF0089 (InterPro:IPR004255); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38995.1); Has 413 Blast hits to 406 proteins in 82 species: Archae - 2; Bacteria - 283; Metazoa - 7; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT5G37300.1p  transcript_id AT5G37300.1  protein_id AT5G37300.1p  transcript_id AT5G37300.1  
At5g37310	chr5:014775939	0.0	C/14775939-14776093,14775486-14775526,14774820-14775405,14774605-14774742,14774360-14774516,14773242-14773726,14772836-14773055	AT5G37310.1  CDS  gene_syn MNJ8.100, MNJ8_100  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_component integral to membrane|GO:0016021||ISS  product unknown protein  note LOCATED IN: integral to membrane, Golgi apparatus, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: endomembrane protein 70, putative (TAIR:AT1G14670.1); Has 1019 Blast hits to 986 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 444; Fungi - 148; Plants - 242; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink).  protein_id AT5G37310.1p  transcript_id AT5G37310.1  protein_id AT5G37310.1p  transcript_id AT5G37310.1  
At5g37320	chr5:014777931	0.0	W/14777931-14778602,14778686-14779381,14779463-14779552	AT5G37320.1  CDS  gene_syn MNJ8.11, MNJ8_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF674 (InterPro:IPR007750); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G43240.3); Has 168 Blast hits to 104 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 168; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G37320.1p  transcript_id AT5G37320.1  protein_id AT5G37320.1p  transcript_id AT5G37320.1  
At5g37330	chr5:014783436	0.0	W/14783436-14786027	AT5G37330.1  mRNA_TE_gene  pseudo  gene_syn MNJ8.120, MNJ8_120  note Transposable element gene, pseudogene, hypothetical protein  
At5g37340	chr5:014792251	0.0	C/14792251-14792373,14791444-14791488,14791213-14791253,14791012-14791093,14790777-14790821,14790526-14790582,14790132-14790191,14789910-14790037,14789569-14789821,14789311-14789409,14789166-14789219,14788993-14789082,14788440-14788548,14788102-14788193,14787879-14787984,14787488-14787600	AT5G37340.2  CDS  gene_syn MNJ8.130, MNJ8_130  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (ZPR1-type) family protein  note zinc finger (ZPR1-type) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, ZPR1-type (InterPro:IPR004457); BEST Arabidopsis thaliana protein match is: zinc finger (ZPR1-type) family protein (TAIR:AT5G22480.1); Has 793 Blast hits to 442 proteins in 196 species: Archae - 177; Bacteria - 0; Metazoa - 200; Fungi - 165; Plants - 28; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).  protein_id AT5G37340.2p  transcript_id AT5G37340.2  protein_id AT5G37340.2p  transcript_id AT5G37340.2  
At5g37340	chr5:014792251	0.0	C/14792251-14792373,14791444-14791488,14791213-14791253,14791012-14791093,14790777-14790821,14790526-14790582,14790132-14790191,14789910-14790037,14789569-14789821,14789343-14789409,14789166-14789236,14788993-14789082,14788440-14788548,14788102-14788193,14787879-14787984,14787488-14787600	AT5G37340.1  CDS  gene_syn MNJ8.130, MNJ8_130  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (ZPR1-type) family protein  note zinc finger (ZPR1-type) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, ZPR1-type (InterPro:IPR004457); BEST Arabidopsis thaliana protein match is: zinc finger (ZPR1-type) family protein (TAIR:AT5G22480.1); Has 857 Blast hits to 449 proteins in 196 species: Archae - 199; Bacteria - 0; Metazoa - 210; Fungi - 174; Plants - 28; Viruses - 0; Other Eukaryotes - 246 (source: NCBI BLink).  protein_id AT5G37340.1p  transcript_id AT5G37340.1  protein_id AT5G37340.1p  transcript_id AT5G37340.1  
At5g37350	chr5:014793037	0.0	W/14793037-14793339,14793537-14793665,14793742-14793834,14793924-14794003,14794084-14794197,14794365-14794438,14794577-14794653,14794749-14794832,14794928-14795020,14795108-14795215,14795298-14795369,14795460-14795828	AT5G37350.1  CDS  gene_syn MNJ8.10, MNJ8_10  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  product RIO1 family protein  note RIO1 family protein; FUNCTIONS IN: protein serine/threonine kinase activity, catalytic activity, ATP binding; CONTAINS InterPro DOMAIN/s: RIO-like kinase (InterPro:IPR018934), Serine/threonine-protein kinase Rio1 (InterPro:IPR017407), RIO kinase (InterPro:IPR000687), RIO kinase, conserved site (InterPro:IPR018935), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: RIO1 family protein (TAIR:AT2G24990.1); Has 14966 Blast hits to 6373 proteins in 570 species: Archae - 264; Bacteria - 603; Metazoa - 8040; Fungi - 1081; Plants - 515; Viruses - 129; Other Eukaryotes - 4334 (source: NCBI BLink).  protein_id AT5G37350.1p  transcript_id AT5G37350.1  protein_id AT5G37350.1p  transcript_id AT5G37350.1  
At5g37350	chr5:014793837	0.0	W/14793837-14794003,14794084-14794197,14794365-14794438,14794577-14794653,14794749-14794832,14794928-14795020,14795108-14795215,14795298-14795369,14795460-14795828	AT5G37350.2  CDS  gene_syn MNJ8.10, MNJ8_10  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  product RIO1 family protein  note RIO1 family protein; FUNCTIONS IN: protein serine/threonine kinase activity, catalytic activity, ATP binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: RIO-like kinase (InterPro:IPR018934), RIO kinase, conserved site (InterPro:IPR018935), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: RIO1 family protein (TAIR:AT2G24990.1); Has 14894 Blast hits to 6310 proteins in 569 species: Archae - 248; Bacteria - 606; Metazoa - 8041; Fungi - 1064; Plants - 508; Viruses - 129; Other Eukaryotes - 4298 (source: NCBI BLink).  protein_id AT5G37350.2p  transcript_id AT5G37350.2  protein_id AT5G37350.2p  transcript_id AT5G37350.2  
At5g37352	chr5:014796126	0.0	W/14796126-14797001	AT5G37352.1  pseudogenic_transcript  pseudo  function Pseudogene of AT2G25010  
At5g37351	chr5:014797306	0.0	C/14797306-14797497	AT5G37351.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G37351.1p  transcript_id AT5G37351.1  protein_id AT5G37351.1p  transcript_id AT5G37351.1  
At5g37360	chr5:014807874	0.0	C/14807874-14808113,14807726-14807785,14807593-14807640,14806472-14806604,14806303-14806379,14806013-14806111,14805861-14805931,14805677-14805767,14805437-14805547	AT5G37360.1  CDS  gene_syn MNJ8.18, MNJ8_18  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 17 Blast hits to 17 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G37360.1p  transcript_id AT5G37360.1  protein_id AT5G37360.1p  transcript_id AT5G37360.1  
At5g37370	chr5:014815698	0.0	C/14815698-14815988,14814768-14814848,14814208-14814279,14812845-14813582	AT5G37370.1  CDS  gene_syn ATSRL1, MNJ8.19, MNJ8_19  gene ATSRL1  function encodes a putative splicing factor. Over-expression in yeast and Arabidopsis result in increased tolerance to high salt.  go_component cellular_component|GO:0005575||ND  go_process RNA processing|GO:0006396||ISS  go_process response to salt stress|GO:0009651|12047626|IGI  go_process response to salt stress|GO:0009651|12047626|IMP  go_function binding|GO:0005488||ISS  product ATSRL1; binding  note ATSRL1; FUNCTIONS IN: binding; INVOLVED IN: response to salt stress, RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PRP38 (InterPro:IPR005037); Has 22348 Blast hits to 11537 proteins in 457 species: Archae - 6; Bacteria - 680; Metazoa - 13207; Fungi - 2847; Plants - 1652; Viruses - 101; Other Eukaryotes - 3855 (source: NCBI BLink).  protein_id AT5G37370.1p  transcript_id AT5G37370.1  protein_id AT5G37370.1p  transcript_id AT5G37370.1  
At5g37370	chr5:014815698	0.0	C/14815698-14815988,14814768-14814848,14814232-14814279,14812845-14813582	AT5G37370.2  CDS  gene_syn ATSRL1, MNJ8.19, MNJ8_19  gene ATSRL1  function encodes a putative splicing factor. Over-expression in yeast and Arabidopsis result in increased tolerance to high salt.  go_component cellular_component|GO:0005575||ND  go_process RNA processing|GO:0006396||ISS  go_process response to salt stress|GO:0009651|12047626|IGI  go_process response to salt stress|GO:0009651|12047626|IMP  go_function binding|GO:0005488||ISS  product ATSRL1; binding  note ATSRL1; FUNCTIONS IN: binding; INVOLVED IN: response to salt stress, RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PRP38 (InterPro:IPR005037); Has 22320 Blast hits to 11522 proteins in 456 species: Archae - 6; Bacteria - 673; Metazoa - 13198; Fungi - 2848; Plants - 1652; Viruses - 98; Other Eukaryotes - 3845 (source: NCBI BLink).  protein_id AT5G37370.2p  transcript_id AT5G37370.2  protein_id AT5G37370.2p  transcript_id AT5G37370.2  
At5g37370	chr5:014815698	0.0	C/14815698-14815988,14815239-14815283	AT5G37370.3  CDS  gene_syn ATSRL1, MNJ8.19, MNJ8_19  gene ATSRL1  function encodes a putative splicing factor. Over-expression in yeast and Arabidopsis result in increased tolerance to high salt.  go_component cellular_component|GO:0005575||ND  go_process RNA processing|GO:0006396||ISS  go_process response to salt stress|GO:0009651|12047626|IGI  go_process response to salt stress|GO:0009651|12047626|IMP  go_function binding|GO:0005488||ISS  product ATSRL1; binding  note ATSRL1; FUNCTIONS IN: binding; INVOLVED IN: response to salt stress, RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PRP38 (InterPro:IPR005037).  protein_id AT5G37370.3p  transcript_id AT5G37370.3  protein_id AT5G37370.3p  transcript_id AT5G37370.3  
At5g37380	chr5:014817035	0.0	C/14817035-14818330	AT5G37380.1  CDS  gene_syn MNJ8.20, MNJ8_20  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G25560.1); Has 14029 Blast hits to 13786 proteins in 1907 species: Archae - 96; Bacteria - 4718; Metazoa - 2901; Fungi - 1131; Plants - 1089; Viruses - 29; Other Eukaryotes - 4065 (source: NCBI BLink).  protein_id AT5G37380.1p  transcript_id AT5G37380.1  protein_id AT5G37380.1p  transcript_id AT5G37380.1  
At5g37380	chr5:014817035	0.0	C/14817035-14818330	AT5G37380.2  CDS  gene_syn MNJ8.20, MNJ8_20  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G25560.1); Has 14029 Blast hits to 13786 proteins in 1907 species: Archae - 96; Bacteria - 4718; Metazoa - 2901; Fungi - 1131; Plants - 1089; Viruses - 29; Other Eukaryotes - 4065 (source: NCBI BLink).  protein_id AT5G37380.2p  transcript_id AT5G37380.2  protein_id AT5G37380.2p  transcript_id AT5G37380.2  
At5g37380	chr5:014817035	0.0	C/14817035-14818330	AT5G37380.3  CDS  gene_syn MNJ8.20, MNJ8_20  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G25560.1); Has 14029 Blast hits to 13786 proteins in 1907 species: Archae - 96; Bacteria - 4718; Metazoa - 2901; Fungi - 1131; Plants - 1089; Viruses - 29; Other Eukaryotes - 4065 (source: NCBI BLink).  protein_id AT5G37380.3p  transcript_id AT5G37380.3  protein_id AT5G37380.3p  transcript_id AT5G37380.3  
At5g37380	chr5:014817035	0.0	C/14817035-14818330	AT5G37380.4  CDS  gene_syn MNJ8.20, MNJ8_20  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G25560.1); Has 14029 Blast hits to 13786 proteins in 1907 species: Archae - 96; Bacteria - 4718; Metazoa - 2901; Fungi - 1131; Plants - 1089; Viruses - 29; Other Eukaryotes - 4065 (source: NCBI BLink).  protein_id AT5G37380.4p  transcript_id AT5G37380.4  protein_id AT5G37380.4p  transcript_id AT5G37380.4  
At5g37380	chr5:014817035	0.0	C/14817035-14818330	AT5G37380.5  CDS  gene_syn MNJ8.20, MNJ8_20  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G25560.1); Has 14029 Blast hits to 13786 proteins in 1907 species: Archae - 96; Bacteria - 4718; Metazoa - 2901; Fungi - 1131; Plants - 1089; Viruses - 29; Other Eukaryotes - 4065 (source: NCBI BLink).  protein_id AT5G37380.5p  transcript_id AT5G37380.5  protein_id AT5G37380.5p  transcript_id AT5G37380.5  
At5g37381	chr5:014822784	0.0	W/14822784-14825642	AT5G37381.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.5e-121 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element)  
At5g37383	chr5:014827030	0.0	W/14827030-14829390	AT5G37383.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 9.0e-76 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At5g37385	chr5:014830453	0.0	W/14830453-14830960	AT5G37385.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G47320.1)  
At5g37390	chr5:014831432	0.0	C/14831432-14833855	AT5G37390.1  mRNA_TE_gene  pseudo  gene_syn T25O11.4, T25O11_4  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09370.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23930.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G47330.1); similar to hypothetical protein 23.t00036 [Brassica oleracea] (GB:ABD65624.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048)  
At5g37400	chr5:014834343	0.0	W/14834343-14836214	AT5G37400.1  CDS  gene_syn T25O11.5, T25O11_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF577 (InterPro:IPR007598); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G37650.1); Has 48 Blast hits to 39 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G37400.1p  transcript_id AT5G37400.1  protein_id AT5G37400.1p  transcript_id AT5G37400.1  
At5g37410	chr5:014836661	0.0	W/14836661-14838508	AT5G37410.1  CDS  gene_syn T25O11.6, T25O11_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF577 (InterPro:IPR007598); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G37920.1); Has 45 Blast hits to 34 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G37410.1p  transcript_id AT5G37410.1  protein_id AT5G37410.1p  transcript_id AT5G37410.1  
At5g37415	chr5:014840076	0.0	C/14840076-14840301,14839314-14839801	AT5G37415.2  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700||IEA  go_function sequence-specific DNA binding|GO:0043565||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700||ISS  product sequence-specific DNA binding / transcription factor  note sequence-specific DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL81 (AGAMOUS-LIKE 81); transcription factor (TAIR:AT5G39750.1); Has 61 Blast hits to 60 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G37415.2p  transcript_id AT5G37415.2  protein_id AT5G37415.2p  transcript_id AT5G37415.2  
At5g37415	chr5:014840076	0.0	C/14840076-14840301,14839326-14839858,14839047-14839238	AT5G37415.1  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700||IEA  go_function sequence-specific DNA binding|GO:0043565||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700||ISS  product sequence-specific DNA binding / transcription factor  note sequence-specific DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL81 (AGAMOUS-LIKE 81); transcription factor (TAIR:AT5G39750.1); Has 132 Blast hits to 128 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 108; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT5G37415.1p  transcript_id AT5G37415.1  protein_id AT5G37415.1p  transcript_id AT5G37415.1  
At5g37420	chr5:014840143	0.0	W/14840143-14841352,14841541-14842070	AT5G37420.1  CDS  gene_syn AGL105, T25O11.7, T25O11_7  gene AGL105  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transcription factor activity|GO:0003700|12837945|ISS  product AGL105; transcription factor  note AGL105; FUNCTIONS IN: transcription factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF577 (InterPro:IPR007598); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G37410.1); Has 13889 Blast hits to 3637 proteins in 280 species: Archae - 20; Bacteria - 1253; Metazoa - 3485; Fungi - 1922; Plants - 914; Viruses - 252; Other Eukaryotes - 6043 (source: NCBI BLink).  protein_id AT5G37420.1p  transcript_id AT5G37420.1  protein_id AT5G37420.1p  transcript_id AT5G37420.1  
At5g37430	chr5:014842430	0.0	W/14842430-14843791,14843847-14844308	AT5G37430.1  CDS  gene_syn T25O11.8, T25O11_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF577 (InterPro:IPR007598); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G37920.1); Has 68997 Blast hits to 14208 proteins in 855 species: Archae - 383; Bacteria - 28327; Metazoa - 10285; Fungi - 6234; Plants - 2855; Viruses - 1769; Other Eukaryotes - 19144 (source: NCBI BLink).  protein_id AT5G37430.1p  transcript_id AT5G37430.1  protein_id AT5G37430.1p  transcript_id AT5G37430.1  
At5g37440	chr5:014844511	0.0	C/14844511-14845374	AT5G37440.1  CDS  gene_syn T25O11.9, T25O11_9  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: heat shock protein binding / unfolded protein binding (TAIR:AT5G37750.1); Has 12589 Blast hits to 12567 proteins in 1810 species: Archae - 79; Bacteria - 4380; Metazoa - 2757; Fungi - 935; Plants - 917; Viruses - 8; Other Eukaryotes - 3513 (source: NCBI BLink).  protein_id AT5G37440.1p  transcript_id AT5G37440.1  protein_id AT5G37440.1p  transcript_id AT5G37440.1  
At5g37442	chr5:014848917	0.0	C/14848917-14849771	AT5G37442.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 5.7e-44 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At5g37445	chr5:014851654	0.0	C/14851654-14852479	AT5G37445.1  pseudogenic_transcript  pseudo  gene_syn T25O11.10  note pseudogene, similar to Similar to splicing factor 3a, subunit 2, 66kDa, blastp match of 60% identity and 1.2e-63 P-value to GP|27371271|gb|AAH41254.1||BC041254 Similar to splicing factor 3a, subunit 2, 66kDa {Xenopus laevis}  
At5g37450	chr5:014857002	0.0	C/14857002-14857098,14856771-14856918,14856224-14856367,14856074-14856145,14855931-14856002,14855780-14855854,14855638-14855706,14855488-14855556,14855327-14855398,14855165-14855248,14855015-14855086,14854159-14854928,14853794-14854077,14853675-14853726,14853354-14853601,14852801-14853280	AT5G37450.1  CDS  gene_syn T25O11.15, T25O11_15  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT1G06840.1); Has 130447 Blast hits to 100957 proteins in 3613 species: Archae - 90; Bacteria - 10363; Metazoa - 49093; Fungi - 7533; Plants - 44846; Viruses - 382; Other Eukaryotes - 18140 (source: NCBI BLink).  protein_id AT5G37450.1p  transcript_id AT5G37450.1  protein_id AT5G37450.1p  transcript_id AT5G37450.1  
At5g37460	chr5:014858494	0.0	C/14858494-14860362	AT5G37460.1  CDS  gene_syn T25O11.12, T25O11_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF577 (InterPro:IPR007598); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G37470.1); Has 46 Blast hits to 37 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 41; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G37460.1p  transcript_id AT5G37460.1  protein_id AT5G37460.1p  transcript_id AT5G37460.1  
At5g37470	chr5:014861503	0.0	C/14861503-14863392	AT5G37470.1  CDS  gene_syn T25O11.13, T25O11_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF577 (InterPro:IPR007598); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G37460.1); Has 43 Blast hits to 32 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G37470.1p  transcript_id AT5G37470.1  protein_id AT5G37470.1p  transcript_id AT5G37470.1  
At5g37475	chr5:014867737	0.0	C/14867737-14867749,14867398-14867516,14867155-14867303,14866855-14867002,14866574-14866733,14866328-14866416	AT5G37475.1  CDS  gene_syn T25O11.11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product translation initiation factor-related  note translation initiation factor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Translation initiation factor eIF3 subunit (InterPro:IPR013906); BEST Arabidopsis thaliana protein match is: translation initiation factor-related (TAIR:AT1G66070.1); Has 268 Blast hits to 268 proteins in 109 species: Archae - 0; Bacteria - 2; Metazoa - 129; Fungi - 75; Plants - 44; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT5G37475.1p  transcript_id AT5G37475.1  protein_id AT5G37475.1p  transcript_id AT5G37475.1  
At5g37473	chr5:014871084	0.0	C/14871084-14871153,14870836-14870987	AT5G37473.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G37474.1); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G37473.1p  transcript_id AT5G37473.1  protein_id AT5G37473.1p  transcript_id AT5G37473.1  
At5g37474	chr5:014875458	0.0	C/14875458-14875527,14875186-14875358	AT5G37474.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G37473.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G37474.1p  transcript_id AT5G37474.1  protein_id AT5G37474.1p  transcript_id AT5G37474.1  
At5g37476	chr5:014875890	0.0	W/14875890-14876773	AT5G37476.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.7e-18 P-value blast match to GB:CAA37925 orf 3 (Ty1_Copia-element) (Arabidopsis thaliana)  
At5g37478	chr5:014881876	0.0	W/14881876-14881878,14882364-14882423,14882826-14882924,14883008-14883067,14883409-14883503,14883679-14883799	AT5G37478.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Targeting for Xklp2 (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G15510.1); Has 39 Blast hits to 39 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G37478.1p  transcript_id AT5G37478.1  protein_id AT5G37478.1p  transcript_id AT5G37478.1  
At5g37480	chr5:014885497	0.0	C/14885497-14885517,14885144-14885378,14885008-14885057,14884477-14884641	AT5G37480.1  CDS  gene_syn MPA22.2, MPA22_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G37480.1p  transcript_id AT5G37480.1  protein_id AT5G37480.1p  transcript_id AT5G37480.1  
At5g37485	chr5:014886193	0.0	C/14886193-14886979	AT5G37485.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G37485.1  
At5g37490	chr5:014887744	0.0	W/14887744-14889051	AT5G37490.1  CDS  gene_syn MPA22.3, MPA22_3  go_component ubiquitin ligase complex|GO:0000151||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  go_process response to chitin|GO:0010200|17722694|IEP  product U-box domain-containing protein  note U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein (TAIR:AT1G66160.1); Has 1383 Blast hits to 1381 proteins in 115 species: Archae - 0; Bacteria - 14; Metazoa - 199; Fungi - 30; Plants - 974; Viruses - 3; Other Eukaryotes - 163 (source: NCBI BLink).  protein_id AT5G37490.1p  transcript_id AT5G37490.1  protein_id AT5G37490.1p  transcript_id AT5G37490.1  
At5g37500	chr5:014894696	0.0	C/14894696-14894883,14893090-14893314,14892940-14893003,14892143-14892482,14891759-14892054,14891387-14891566,14891086-14891307,14890815-14891003,14890673-14890748,14890304-14890598,14890106-14890227,14889758-14890023	AT5G37500.1  CDS  gene_syn GATED OUTWARDLY-RECTIFYING K+ CHANNEL, GORK, MPA22.4, MPA22_4  gene GORK  function encodes a guard cell outward potassium channel. Mutants have increased water consumption and limited stomatal closure in response to abscisic and jasmonic acids. It forms a heteromeric K(out) channels with SKOR. The gene is expressed ubiquitously in root and the vasculature and guard cells of leaves. Expression is suppressed during agrobacterium-induced tumor formation and increased in response to water deprivation and cold.  go_component nucleus|GO:0005634|14617066|IDA  go_process response to cold|GO:0009409|14596925|IEP  go_process response to water deprivation|GO:0009414|14596925|IEP  go_process response to abscisic acid stimulus|GO:0009737|14596925|IEP  go_process response to jasmonic acid stimulus|GO:0009753|15064385|IMP  go_function inward rectifier potassium channel activity|GO:0005242||ISS  go_function outward rectifier potassium channel activity|GO:0015271|11113445|IDA  go_function outward rectifier potassium channel activity|GO:0015271|12671068|IMP  go_function cyclic nucleotide binding|GO:0030551||ISS  product GORK (GATED OUTWARDLY-RECTIFYING K+ CHANNEL); cyclic nucleotide binding / inward rectifier potassium channel/ outward rectifier potassium channel  note GATED OUTWARDLY-RECTIFYING K+ CHANNEL (GORK); FUNCTIONS IN: outward rectifier potassium channel activity, cyclic nucleotide binding, inward rectifier potassium channel activity; INVOLVED IN: response to jasmonic acid stimulus, response to water deprivation, response to cold, response to abscisic acid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Cyclic nucleotide-binding, conserved site (InterPro:IPR018488), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: SKOR; cyclic nucleotide binding / inward rectifier potassium channel/ outward rectifier potassium channel (TAIR:AT3G02850.1); Has 69285 Blast hits to 27906 proteins in 1059 species: Archae - 79; Bacteria - 5585; Metazoa - 35136; Fungi - 5167; Plants - 2177; Viruses - 1261; Other Eukaryotes - 19880 (source: NCBI BLink).  protein_id AT5G37500.1p  transcript_id AT5G37500.1  protein_id AT5G37500.1p  transcript_id AT5G37500.1  
At5g37510	chr5:014897490	0.0	W/14897490-14897910,14898016-14898262,14898359-14898653,14898733-14899107,14899453-14900348,14900435-14900447	AT5G37510.2  CDS  gene_syn EMB1467, MPA22.5, MPA22_5, embryo defective 1467  gene EMB1467  function Encodes a subunit of the 400 kDa subcomplex of the mitochondrial NADH dehydrogenase (complex I). The protein has been isolated in the male gametophyte.  go_component mitochondrion|GO:0005739|15276431|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_function NADH dehydrogenase (ubiquinone) activity|GO:0008137||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on NADH or NADPH|GO:0016651||IEA  go_function iron-sulfur cluster binding|GO:0051536||IEA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|12837548|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial membrane|GO:0031966|16407270|IDA  go_component respiratory chain complex I|GO:0045271|16407270|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process response to oxidative stress|GO:0006979|12492832|IDA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process photorespiration|GO:0009853|16407270|TAS  go_function NADH dehydrogenase activity|GO:0003954||ISS  product EMB1467 (embryo defective 1467); NADH dehydrogenase (ubiquinone)/ NADH dehydrogenase/ electron carrier/ iron-sulfur cluster binding / oxidoreductase/ oxidoreductase, acting on NADH or NADPH  note embryo defective 1467 (EMB1467); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryonic development ending in seed dormancy, response to oxidative stress, photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, chloroplast, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NADH-quinone oxidoreductase, chain G (InterPro:IPR010228), Molybdopterin oxidoreductase (InterPro:IPR006656), Ferredoxin (InterPro:IPR001041), NADH dehydrogenase 75 kDa subunit, conserved site (InterPro:IPR000283), NADH-quinone oxidoreductase, chain G, C-terminal (InterPro:IPR015405); Has 9033 Blast hits to 8307 proteins in 1198 species: Archae - 196; Bacteria - 3765; Metazoa - 176; Fungi - 73; Plants - 34; Viruses - 0; Other Eukaryotes - 4789 (source: NCBI BLink).  protein_id AT5G37510.2p  transcript_id AT5G37510.2  protein_id AT5G37510.2p  transcript_id AT5G37510.2  
At5g37510	chr5:014897490	0.0	W/14897490-14897910,14898016-14898262,14898359-14898653,14898733-14899107,14899453-14900352	AT5G37510.1  CDS  gene_syn EMB1467, MPA22.5, MPA22_5, embryo defective 1467  gene EMB1467  function Encodes a subunit of the 400 kDa subcomplex of the mitochondrial NADH dehydrogenase (complex I). The protein has been isolated in the male gametophyte.  go_component mitochondrion|GO:0005739|15276431|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_function NADH dehydrogenase (ubiquinone) activity|GO:0008137||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on NADH or NADPH|GO:0016651||IEA  go_function iron-sulfur cluster binding|GO:0051536||IEA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|12837548|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial membrane|GO:0031966|16407270|IDA  go_component respiratory chain complex I|GO:0045271|16407270|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process response to oxidative stress|GO:0006979|12492832|IDA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process photorespiration|GO:0009853|16407270|TAS  go_function NADH dehydrogenase activity|GO:0003954||ISS  product EMB1467 (embryo defective 1467); NADH dehydrogenase (ubiquinone)/ NADH dehydrogenase/ electron carrier/ iron-sulfur cluster binding / oxidoreductase/ oxidoreductase, acting on NADH or NADPH  note embryo defective 1467 (EMB1467); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryonic development ending in seed dormancy, response to oxidative stress, photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, chloroplast, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NADH-quinone oxidoreductase, chain G (InterPro:IPR010228), Molybdopterin oxidoreductase (InterPro:IPR006656), Ferredoxin (InterPro:IPR001041), NADH dehydrogenase 75 kDa subunit, conserved site (InterPro:IPR000283), NADH-quinone oxidoreductase, chain G, C-terminal (InterPro:IPR015405); Has 9031 Blast hits to 8305 proteins in 1198 species: Archae - 196; Bacteria - 3765; Metazoa - 176; Fungi - 73; Plants - 34; Viruses - 0; Other Eukaryotes - 4787 (source: NCBI BLink).  protein_id AT5G37510.1p  transcript_id AT5G37510.1  protein_id AT5G37510.1p  transcript_id AT5G37510.1  
At5g37520	chr5:014902670	0.0	W/14902670-14902771,14903428-14903571,14903858-14904211	AT5G37520.1  CDS  gene_syn MPA22.6, MPA22_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24950.1); Has 316 Blast hits to 304 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 312; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G37520.1p  transcript_id AT5G37520.1  protein_id AT5G37520.1p  transcript_id AT5G37520.1  
At5g37530	chr5:014906505	0.0	W/14906505-14906596,14906711-14906757,14906876-14906969,14907060-14907207,14907368-14907580,14907681-14907815,14907908-14908042,14908130-14908345,14908548-14908672,14908750-14908807,14908910-14909020	AT5G37530.1  CDS  gene_syn MPA22.7, MPA22_7  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function catalytic activity|GO:0003824||ISS  product thiF family protein  note thiF family protein; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594), Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: CNX5 (CO-FACTOR FOR NITRATE, REDUCTASE AND XANTHINE DEHYDROGENASE 5); Mo-molybdopterin cofactor sulfurase (TAIR:AT5G55130.1); Has 7654 Blast hits to 7609 proteins in 1305 species: Archae - 133; Bacteria - 4321; Metazoa - 630; Fungi - 403; Plants - 136; Viruses - 0; Other Eukaryotes - 2031 (source: NCBI BLink).  protein_id AT5G37530.1p  transcript_id AT5G37530.1  protein_id AT5G37530.1p  transcript_id AT5G37530.1  
At5g37530	chr5:014906505	0.0	W/14906505-14906596,14906711-14906757,14906879-14906969,14907060-14907207,14907368-14907580,14907681-14907815,14907908-14908042,14908130-14908345,14908548-14908672,14908750-14908807,14908910-14909020	AT5G37530.2  CDS  gene_syn MPA22.7, MPA22_7  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function catalytic activity|GO:0003824||ISS  product thiF family protein  note thiF family protein; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594), Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: CNX5 (CO-FACTOR FOR NITRATE, REDUCTASE AND XANTHINE DEHYDROGENASE 5); Mo-molybdopterin cofactor sulfurase (TAIR:AT5G55130.1); Has 7653 Blast hits to 7608 proteins in 1305 species: Archae - 133; Bacteria - 4321; Metazoa - 630; Fungi - 405; Plants - 132; Viruses - 0; Other Eukaryotes - 2032 (source: NCBI BLink).  protein_id AT5G37530.2p  transcript_id AT5G37530.2  protein_id AT5G37530.2p  transcript_id AT5G37530.2  
At5g37540	chr5:014912862	0.0	W/14912862-14914190	AT5G37540.1  CDS  gene_syn MPA22.8, MPA22_8  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT1G66180.1); Has 1186 Blast hits to 1173 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 87; Plants - 1052; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT5G37540.1p  transcript_id AT5G37540.1  protein_id AT5G37540.1p  transcript_id AT5G37540.1  
At5g37550	chr5:014919100	0.0	C/14919100-14919792	AT5G37550.1  CDS  gene_syn MPA22.10, MPA22_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, 4 leaf senescence stage, LP.02 two leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G66190.1); Has 13 Blast hits to 13 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G37550.1p  transcript_id AT5G37550.1  protein_id AT5G37550.1p  transcript_id AT5G37550.1  
At5g37560	chr5:014921986	0.0	W/14921986-14922348,14922741-14923462,14923541-14923790	AT5G37560.1  CDS  gene_syn K12B20.10, K12B20_10  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867); BEST Arabidopsis thaliana protein match is: zinc finger protein-related (TAIR:AT2G25370.1); Has 6665 Blast hits to 3561 proteins in 218 species: Archae - 4; Bacteria - 595; Metazoa - 2541; Fungi - 880; Plants - 516; Viruses - 91; Other Eukaryotes - 2038 (source: NCBI BLink).  protein_id AT5G37560.1p  transcript_id AT5G37560.1  protein_id AT5G37560.1p  transcript_id AT5G37560.1  
At5g37570	chr5:014924494	0.0	C/14924494-14926146	AT5G37570.1  CDS  gene_syn K12B20.3, K12B20_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G29230.1); Has 13007 Blast hits to 5139 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 84; Fungi - 90; Plants - 12569; Viruses - 0; Other Eukaryotes - 264 (source: NCBI BLink).  protein_id AT5G37570.1p  transcript_id AT5G37570.1  protein_id AT5G37570.1p  transcript_id AT5G37570.1  
At5g37590	chr5:014932598	0.0	C/14932598-14932709,14932102-14932200,14931815-14932002,14931618-14931722,14931154-14931254,14930660-14930738,14930009-14930074,14929683-14929739,14929531-14929587,14929328-14929405,14928838-14928935,14928703-14928748,14928494-14928621,14928268-14928379,14928125-14928187,14927878-14927937,14927403-14927597	AT5G37590.1  CDS  gene_syn K12B20.5, K12B20_5  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: SPY (SPINDLY); protein N-acetylglucosaminyltransferase/ protein binding / transferase, transferring glycosyl groups (TAIR:AT3G11540.1); Has 5220 Blast hits to 1438 proteins in 198 species: Archae - 92; Bacteria - 1806; Metazoa - 2530; Fungi - 477; Plants - 83; Viruses - 0; Other Eukaryotes - 232 (source: NCBI BLink).  protein_id AT5G37590.1p  transcript_id AT5G37590.1  protein_id AT5G37590.1p  transcript_id AT5G37590.1  
At5g37600	chr5:014935583	0.0	C/14935583-14935656,14935135-14935174,14934943-14935046,14934792-14934840,14934518-14934712,14934232-14934435,14934064-14934155,14933824-14933983,14933574-14933726	AT5G37600.1  CDS  gene_syn ATGSR1, GLN1;1, K12B20.50, K12B20_50  gene ATGSR1  function encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammonium  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_function glutamate-ammonia ligase activity|GO:0004356||ISS  go_function copper ion binding|GO:0005507|16526091|IDA  go_component cytosol|GO:0005829|10482686|TAS  go_process response to light stimulus|GO:0009416|10482686|IEP  go_process response to sucrose stimulus|GO:0009744|10482686|IEP  go_process response to glucose stimulus|GO:0009749|10482686|IEP  go_process response to fructose stimulus|GO:0009750|10482686|IEP  go_process nitrate assimilation|GO:0042128|16338958|TAS  go_function glutamate-ammonia ligase activity|GO:0004356|14757761|IDA  go_function glutamate-ammonia ligase activity|GO:0004356|1684022|IEP  product ATGSR1; copper ion binding / glutamate-ammonia ligase  note ATGSR1; FUNCTIONS IN: glutamate-ammonia ligase activity, copper ion binding; INVOLVED IN: response to fructose stimulus, nitrate assimilation, response to light stimulus, response to sucrose stimulus, response to glucose stimulus; LOCATED IN: cytosol, cytosolic ribosome, cell wall, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine synthetase, catalytic region (InterPro:IPR008146), Glutamine synthetase, beta-Grasp (InterPro:IPR008147), Glutamine synthetase/guanido kinase, catalytic region (InterPro:IPR014746); BEST Arabidopsis thaliana protein match is: ATGSR2; copper ion binding / glutamate-ammonia ligase (TAIR:AT1G66200.1); Has 7787 Blast hits to 7784 proteins in 2120 species: Archae - 120; Bacteria - 3441; Metazoa - 397; Fungi - 176; Plants - 1090; Viruses - 3; Other Eukaryotes - 2560 (source: NCBI BLink).  protein_id AT5G37600.1p  transcript_id AT5G37600.1  protein_id AT5G37600.1p  transcript_id AT5G37600.1  
At5g37610	chr5:014938121	0.0	W/14938121-14938612	AT5G37610.1  CDS  gene_syn K12B20.7, K12B20_7  go_component mitochondrial outer membrane|GO:0005741||IEA  go_component endomembrane system|GO:0012505||IEA  go_process anion transport|GO:0006820||IEA  go_function voltage-gated anion channel activity|GO:0008308||IEA  product voltage-gated anion channel  note voltage-gated anion channel; FUNCTIONS IN: voltage-gated anion channel activity; INVOLVED IN: anion transport; LOCATED IN: mitochondrial outer membrane, endomembrane system; CONTAINS InterPro DOMAIN/s: Porin, eukaryotic type (InterPro:IPR001925); BEST Arabidopsis thaliana protein match is: VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1); voltage-gated anion channel (TAIR:AT3G01280.1); Has 204 Blast hits to 204 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 4; Plants - 147; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G37610.1p  transcript_id AT5G37610.1  protein_id AT5G37610.1p  transcript_id AT5G37610.1  
At5g37620	chr5:014942396	0.0	C/14942396-14944354	AT5G37620.1  CDS  gene_syn K12B20.70, K12B20_70  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, sperm cell; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT2G04680.1); Has 1393 Blast hits to 519 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 0; Plants - 1331; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT5G37620.1p  transcript_id AT5G37620.1  protein_id AT5G37620.1p  transcript_id AT5G37620.1  
At5g37630	chr5:014947407	0.0	W/14947407-14947835,14947938-14948141,14948251-14948396,14948558-14948826,14948909-14949006,14949714-14949861,14949937-14950376,14950723-14951237,14951319-14951379,14951466-14951735,14951849-14952110,14952233-14952546	AT5G37630.1  CDS  gene_syn EMB2656, EMBRYO DEFECTIVE 2656, K12B20.9, K12B20_9  gene EMB2656  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process mitotic chromosome condensation|GO:0007076||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product EMB2656 (EMBRYO DEFECTIVE 2656); binding  note EMBRYO DEFECTIVE 2656 (EMB2656); FUNCTIONS IN: binding; INVOLVED IN: embryonic development ending in seed dormancy, mitotic chromosome condensation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 226 Blast hits to 211 proteins in 96 species: Archae - 0; Bacteria - 4; Metazoa - 94; Fungi - 89; Plants - 18; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT5G37630.1p  transcript_id AT5G37630.1  protein_id AT5G37630.1p  transcript_id AT5G37630.1  
At5g37640	chr5:014952782	0.0	C/14952782-14953750	AT5G37640.1  CDS  gene_syn K12B20.90, K12B20_90, UBQ9  gene UBQ9  function polyubiquitin gene with 4 ubiquitin repeats. The first ubiquitin repeat has 16 amino acid replacements.  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component intracellular|GO:0005622||TAS  go_process protein modification process|GO:0006464||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|7713442|ISS  go_function protein binding|GO:0005515|8382544|ISS  product UBQ9; protein binding  note UBQ9; FUNCTIONS IN: protein binding; INVOLVED IN: protein modification process, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleolus, cell wall, intracellular, plasma membrane; EXPRESSED IN: cultured cell; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: UBQ4; protein binding (TAIR:AT5G20620.1); Has 17506 Blast hits to 5465 proteins in 614 species: Archae - 0; Bacteria - 32; Metazoa - 8264; Fungi - 1788; Plants - 3007; Viruses - 603; Other Eukaryotes - 3812 (source: NCBI BLink).  protein_id AT5G37640.1p  transcript_id AT5G37640.1  protein_id AT5G37640.1p  transcript_id AT5G37640.1  
At5g37650	chr5:014954011	0.0	C/14954011-14955834	AT5G37650.1  CDS  gene_syn K12B20.11, K12B20_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF577 (InterPro:IPR007598); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G37400.1); Has 45 Blast hits to 34 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G37650.1p  transcript_id AT5G37650.1  protein_id AT5G37650.1p  transcript_id AT5G37650.1  
At5g37660	chr5:014959842	0.0	W/14959842-14960586,14961014-14961127,14961372-14961379	AT5G37660.1  CDS  gene_syn K12B20.12, K12B20_12, PDLP7, PLASMODESMATA-LOCATED PROTEIN 7  gene PDLP7  function Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.  go_component plasmodesma|GO:0009506|18215111|IDA  go_process biological_process|GO:0008150||ND  product PDLP7 (PLASMODESMATA-LOCATED PROTEIN 7)  note PLASMODESMATA-LOCATED PROTEIN 7 (PDLP7); INVOLVED IN: biological_process unknown; LOCATED IN: plasmodesma; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: PDLP6 (PLASMODESMATA-LOCATED PROTEIN 6) (TAIR:AT2G01660.1); Has 858 Blast hits to 815 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 856; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G37660.1p  transcript_id AT5G37660.1  protein_id AT5G37660.1p  transcript_id AT5G37660.1  
At5g37660	chr5:014959842	0.0	W/14959842-14960586,14961014-14961165	AT5G37660.2  CDS  gene_syn K12B20.12, K12B20_12, PDLP7, PLASMODESMATA-LOCATED PROTEIN 7  gene PDLP7  function Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.  go_component plasmodesma|GO:0009506|18215111|IDA  go_process biological_process|GO:0008150||ND  product PDLP7 (PLASMODESMATA-LOCATED PROTEIN 7)  note PLASMODESMATA-LOCATED PROTEIN 7 (PDLP7); INVOLVED IN: biological_process unknown; LOCATED IN: plasmodesma; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: PDLP6 (PLASMODESMATA-LOCATED PROTEIN 6) (TAIR:AT2G01660.1); Has 857 Blast hits to 814 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 855; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G37660.2p  transcript_id AT5G37660.2  protein_id AT5G37660.2p  transcript_id AT5G37660.2  
At5g37665	chr5:014962141	0.0	C/14962141-14967533	AT5G37665.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.2e-44 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)  
At5g37667	chr5:014968247	0.0	C/14968247-14968351	AT5G37667.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G37667.1p  transcript_id AT5G37667.1  protein_id AT5G37667.1p  transcript_id AT5G37667.1  
At5g37670	chr5:014969035	0.0	W/14969035-14969448	AT5G37670.1  CDS  gene_syn K12B20.120, K12B20_120  go_process response to heat|GO:0009408||ISS  go_function molecular_function|GO:0003674||ND  product 15.7 kDa class I-related small heat shock protein-like (HSP15.7-CI)  note 15.7 kDa class I-related small heat shock protein-like (HSP15.7-CI); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to heat; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: 17.6 kDa class I heat shock protein (HSP17.6A-CI) (TAIR:AT1G59860.1); Has 2897 Blast hits to 2897 proteins in 703 species: Archae - 90; Bacteria - 1428; Metazoa - 5; Fungi - 122; Plants - 938; Viruses - 0; Other Eukaryotes - 314 (source: NCBI BLink).  protein_id AT5G37670.1p  transcript_id AT5G37670.1  protein_id AT5G37670.1p  transcript_id AT5G37670.1  
At5g37680	chr5:014971061	0.0	C/14971061-14971098,14970504-14970585,14970249-14970403,14969988-14970149,14969797-14969914	AT5G37680.1  CDS  gene_syn ADP-ribosylation factor-like A1A, ATARLA1A, K12B20.130, K12B20_130  gene ATARLA1A  function A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARL GTPases.  go_component endomembrane system|GO:0012505||IEA  go_function GTP binding|GO:0005525|12644670|ISS  product ATARLA1A (ADP-ribosylation factor-like A1A); GTP binding  note ADP-ribosylation factor-like A1A (ATARLA1A); FUNCTIONS IN: GTP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ATARLA1D (ADP-ribosylation factor-like A1D); GTP binding (TAIR:AT5G67560.1); Has 16361 Blast hits to 16356 proteins in 524 species: Archae - 15; Bacteria - 158; Metazoa - 8236; Fungi - 1984; Plants - 2042; Viruses - 3; Other Eukaryotes - 3923 (source: NCBI BLink).  protein_id AT5G37680.1p  transcript_id AT5G37680.1  protein_id AT5G37680.1p  transcript_id AT5G37680.1  
At5g37690	chr5:014975878	0.0	C/14975878-14976115,14975447-14975574,14975219-14975345,14974989-14975101,14973969-14974218,14973610-14973824	AT5G37690.1  CDS  gene_syn AT5G37700, K12B20.140, K12B20_140  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function lipase activity|GO:0016298||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT1G74460.1); Has 1855 Blast hits to 1841 proteins in 173 species: Archae - 0; Bacteria - 257; Metazoa - 1; Fungi - 39; Plants - 1547; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT5G37690.1p  transcript_id AT5G37690.1  protein_id AT5G37690.1p  transcript_id AT5G37690.1  
At5g37710	chr5:014979159	0.0	W/14979159-14979860,14980379-14980437,14980523-14980651,14980734-14980860,14981107-14981400	AT5G37710.1  CDS  gene_syn K12B20.160, K12B20_160  go_component plasma membrane|GO:0005886|17317660|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_process lipid catabolic process|GO:0016042||IEA  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function calmodulin binding|GO:0005516||ISS  product lipase class 3 family protein / calmodulin-binding heat-shock protein, putative  note lipase class 3 family protein / calmodulin-binding heat-shock protein, putative; FUNCTIONS IN: triacylglycerol lipase activity, calmodulin binding; INVOLVED IN: lipid catabolic process, lipid metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921), Mono- and diacylglycerol lipase, N-terminal (InterPro:IPR005592); BEST Arabidopsis thaliana protein match is: lipase class 3 family protein / calmodulin-binding heat-shock protein, putative (TAIR:AT3G49050.1); Has 337 Blast hits to 336 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 142; Fungi - 21; Plants - 123; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT5G37710.1p  transcript_id AT5G37710.1  protein_id AT5G37710.1p  transcript_id AT5G37710.1  
At5g37720	chr5:014983793	0.0	C/14983793-14983978,14982839-14982982,14982689-14982757,14982380-14982579,14982195-14982254,14981805-14981988	AT5G37720.2  CDS  gene_syn K12B20.19, K12B20_19  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product RNA and export factor-binding protein, putative  note RNA and export factor-binding protein, putative; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA and export factor-binding protein, putative (TAIR:AT1G66260.1); Has 4756 Blast hits to 4444 proteins in 358 species: Archae - 2; Bacteria - 230; Metazoa - 2500; Fungi - 868; Plants - 728; Viruses - 9; Other Eukaryotes - 419 (source: NCBI BLink).  protein_id AT5G37720.2p  transcript_id AT5G37720.2  protein_id AT5G37720.2p  transcript_id AT5G37720.2  
At5g37720	chr5:014983793	0.0	C/14983793-14983978,14982839-14982982,14982689-14982757,14982380-14982579,14982195-14982278,14981805-14981988	AT5G37720.1  CDS  gene_syn K12B20.19, K12B20_19  go_component nucleolus|GO:0005730|15496452|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product RNA and export factor-binding protein, putative  note RNA and export factor-binding protein, putative; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA and export factor-binding protein, putative (TAIR:AT1G66260.1); Has 7601 Blast hits to 6318 proteins in 473 species: Archae - 0; Bacteria - 595; Metazoa - 3780; Fungi - 1246; Plants - 1211; Viruses - 56; Other Eukaryotes - 713 (source: NCBI BLink).  protein_id AT5G37720.1p  transcript_id AT5G37720.1  protein_id AT5G37720.1p  transcript_id AT5G37720.1  
At5g37730	chr5:014986650	0.0	C/14986650-14986884,14986141-14986454	AT5G37730.1  CDS  gene_syn K12B20.20, K12B20_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23150.1); Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G37730.1p  transcript_id AT5G37730.1  protein_id AT5G37730.1p  transcript_id AT5G37730.1  
At5g37732	chr5:014987706	0.0	C/14987706-14988261	AT5G37732.1  pseudogenic_transcript  pseudo  function unknown pseudogene  
At5g37740	chr5:014992148	0.0	W/14992148-14992258,14992963-14993058,14993132-14993431	AT5G37740.1  CDS  gene_syn K12B20.22, K12B20_22  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT1G66360.1); Has 2572 Blast hits to 2201 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 1663; Fungi - 280; Plants - 414; Viruses - 0; Other Eukaryotes - 215 (source: NCBI BLink).  protein_id AT5G37740.1p  transcript_id AT5G37740.1  protein_id AT5G37740.1p  transcript_id AT5G37740.1  
At5g37750	chr5:014995949	0.0	W/14995949-14996674	AT5G37750.1  CDS  gene_syn K12B20.23, K12B20_23  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product heat shock protein binding / unfolded protein binding  note heat shock protein binding / unfolded protein binding; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT5G37440.1); Has 12662 Blast hits to 12642 proteins in 1816 species: Archae - 78; Bacteria - 4418; Metazoa - 2764; Fungi - 962; Plants - 909; Viruses - 8; Other Eukaryotes - 3523 (source: NCBI BLink).  protein_id AT5G37750.1p  transcript_id AT5G37750.1  protein_id AT5G37750.1p  transcript_id AT5G37750.1  
At5g37760	chr5:014997168	0.0	W/14997168-14997288,14997362-14997462,14997734-14997866,14997951-14998219	AT5G37760.1  CDS  gene_syn K12B20.210, K12B20_210  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT4G19590.1); Has 9416 Blast hits to 9415 proteins in 1643 species: Archae - 64; Bacteria - 3600; Metazoa - 1840; Fungi - 531; Plants - 616; Viruses - 5; Other Eukaryotes - 2760 (source: NCBI BLink).  protein_id AT5G37760.1p  transcript_id AT5G37760.1  protein_id AT5G37760.1p  transcript_id AT5G37760.1  
At5g37770	chr5:014999075	0.0	C/14999075-14999560	AT5G37770.1  CDS  gene_syn CALMODULIN-LIKE 24, CML24, K22F20.10, K22F20_10, TCH2, TOUCH 2  gene TCH2  function Encodes a protein with 40% similarity to calmodulin. Binds Ca(2+) and, as a consequence, undergoes conformational changes. CML24 expression occurs in all major organs, and transcript levels are increased from 2- to 15-fold in plants subjected to touch, darkness, heat, cold, hydrogen peroxide, abscisic acid (ABA), and indole-3-acetic acid. However, CML24 protein accumulation changes were not detectable. The putative CML24 regulatory region confers reporter expression at sites of predicted mechanical stress; in regions undergoing growth; in vascular tissues and various floral organs; and in stomata, trichomes, and hydathodes. CML24-underexpressing transgenics are resistant to ABA inhibition of germination and seedling growth, are defective in long-day induction of flowering, and have enhanced tolerance to CoCl(2), molybdic acid, ZnSO(4), and MgCl(2).  go_component plasma membrane|GO:0005886|17317660|IDA  go_component actin cytoskeleton|GO:0015629|17010111|IDA  go_process response to heat|GO:0009408|1373491|IEP  go_process response to heat|GO:0009408|16113225|IEP  go_process response to cold|GO:0009409|16113225|IEP  go_process response to mechanical stimulus|GO:0009612|1373491|TAS  go_process response to mechanical stimulus|GO:0009612|16113225|IEP  go_process response to absence of light|GO:0009646|16113225|IEP  go_process response to auxin stimulus|GO:0009733|16113225|IEP  go_process response to abscisic acid stimulus|GO:0009737|16113225|IEP  go_process response to abscisic acid stimulus|GO:0009737|16113225|IMP  go_process response to gibberellin stimulus|GO:0009739|16113225|IEP  go_process response to 1-Aminocyclopropane-1-carboxylic Acid|GO:0009961|16113225|IEP  go_process response to metal ion|GO:0010038|16113225|IMP  go_process calcium-mediated signaling|GO:0019722|1373491|IEP  go_process response to hydrogen peroxide|GO:0042542|16113225|IEP  go_process innate immune response|GO:0045087|18689446|IMP  go_process long-day photoperiodism, flowering|GO:0048574|16113225|IMP  go_function calcium ion binding|GO:0005509|16113225|IDA  go_function calcium ion binding|GO:0005509|9037719|ISS  go_function calcium ion binding|GO:0005509||ISS  product TCH2 (TOUCH 2); calcium ion binding  note TOUCH 2 (TCH2); FUNCTIONS IN: calcium ion binding; INVOLVED IN: in 13 processes; LOCATED IN: plasma membrane, actin cytoskeleton; EXPRESSED IN: 34 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin-related protein, putative (TAIR:AT1G66400.1); Has 23193 Blast hits to 13671 proteins in 1332 species: Archae - 0; Bacteria - 128; Metazoa - 9776; Fungi - 5323; Plants - 4390; Viruses - 4; Other Eukaryotes - 3572 (source: NCBI BLink).  protein_id AT5G37770.1p  transcript_id AT5G37770.1  protein_id AT5G37770.1p  transcript_id AT5G37770.1  
At5g37780	chr5:015006042	0.0	C/15006042-15006117,15004769-15005142	AT5G37780.1  CDS  gene_syn ACAM-1, CALMODULIN 1, CAM1, K22F20.20, K22F20_20, TCH1, TOUCH 1  gene CAM1  function encodes a calmodulin that is involved in thigmomorphogenesis. Gene expression is rapidly induced upon a variety of abiotic stimuli, including water spray, subirrigation, wind, touch, wounding, or darkness.  go_component nucleus|GO:0005634|14617066|IDA  go_process detection of calcium ion|GO:0005513|2302732|ISS  go_process response to mechanical stimulus|GO:0009612|2302732|IEP  go_function calcium ion binding|GO:0005509||ISS  go_function calcium ion binding|GO:0005509||NAS  product CAM1 (CALMODULIN 1); calcium ion binding  note CALMODULIN 1 (CAM1); FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to mechanical stimulus, detection of calcium ion; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: CAM4 (calmodulin 4); calcium ion binding / signal transducer (TAIR:AT1G66410.1); Has 26131 Blast hits to 18186 proteins in 1451 species: Archae - 0; Bacteria - 146; Metazoa - 12387; Fungi - 5187; Plants - 4244; Viruses - 0; Other Eukaryotes - 4167 (source: NCBI BLink).  protein_id AT5G37780.1p  transcript_id AT5G37780.1  protein_id AT5G37780.1p  transcript_id AT5G37780.1  
At5g37780	chr5:015006042	0.0	C/15006042-15006117,15005347-15005424,15004769-15005142	AT5G37780.3  CDS  gene_syn ACAM-1, CALMODULIN 1, CAM1, K22F20.20, K22F20_20, TCH1, TOUCH 1  gene CAM1  function encodes a calmodulin that is involved in thigmomorphogenesis. Gene expression is rapidly induced upon a variety of abiotic stimuli, including water spray, subirrigation, wind, touch, wounding, or darkness.  go_process detection of calcium ion|GO:0005513|2302732|ISS  go_process response to mechanical stimulus|GO:0009612|2302732|IEP  go_function calcium ion binding|GO:0005509||ISS  go_function calcium ion binding|GO:0005509||NAS  product CAM1 (CALMODULIN 1); calcium ion binding  note CALMODULIN 1 (CAM1); FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to mechanical stimulus, detection of calcium ion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: CAM4 (calmodulin 4); calcium ion binding / signal transducer (TAIR:AT1G66410.1).  protein_id AT5G37780.3p  transcript_id AT5G37780.3  protein_id AT5G37780.3p  transcript_id AT5G37780.3  
At5g37780	chr5:015006042	0.0	C/15006042-15006117,15005885-15005929,15004769-15005142	AT5G37780.2  CDS  gene_syn ACAM-1, CALMODULIN 1, CAM1, K22F20.20, K22F20_20, TCH1, TOUCH 1  gene CAM1  function encodes a calmodulin that is involved in thigmomorphogenesis. Gene expression is rapidly induced upon a variety of abiotic stimuli, including water spray, subirrigation, wind, touch, wounding, or darkness.  go_process detection of calcium ion|GO:0005513|2302732|ISS  go_process response to mechanical stimulus|GO:0009612|2302732|IEP  go_function calcium ion binding|GO:0005509||ISS  go_function calcium ion binding|GO:0005509||NAS  product CAM1 (CALMODULIN 1); calcium ion binding  note CALMODULIN 1 (CAM1); FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to mechanical stimulus, detection of calcium ion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: CAM4 (calmodulin 4); calcium ion binding / signal transducer (TAIR:AT1G66410.1).  protein_id AT5G37780.2p  transcript_id AT5G37780.2  protein_id AT5G37780.2p  transcript_id AT5G37780.2  
At5g37790	chr5:015010386	0.0	C/15010386-15011025,15009554-15009811,15009294-15009472,15009132-15009211,15008897-15009044,15008433-15008786	AT5G37790.1  CDS  gene_syn K22F20.5, K22F20_5  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G66460.1); Has 84150 Blast hits to 83217 proteins in 3094 species: Archae - 54; Bacteria - 7860; Metazoa - 36062; Fungi - 6861; Plants - 18530; Viruses - 381; Other Eukaryotes - 14402 (source: NCBI BLink).  protein_id AT5G37790.1p  transcript_id AT5G37790.1  protein_id AT5G37790.1p  transcript_id AT5G37790.1  
At5g37795	chr5:015032508	0.0	C/15032508-15032581	AT5G37795.1  tRNA  gene_syn 67732.TRNA-ASN-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asn (anticodon: GTT)  transcript_id AT5G37795.1  
At5g37800	chr5:015036197	0.0	W/15036197-15036742,15036836-15036940,15037072-15037137,15037259-15037324,15037434-15037574	AT5G37800.1  CDS  gene_syn K22F20.8, K22F20_8  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT1G66470.1); Has 1259 Blast hits to 1249 proteins in 61 species: Archae - 0; Bacteria - 2; Metazoa - 18; Fungi - 4; Plants - 1235; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G37800.1p  transcript_id AT5G37800.1  protein_id AT5G37800.1p  transcript_id AT5G37800.1  
At5g37810	chr5:015045232	0.0	W/15045232-15045363,15045472-15045696,15046157-15046354,15047018-15047079,15047573-15047807	AT5G37810.1  CDS  gene_syn K22F20.50, K22F20_50, NIP4;1, NLM4, NOD26-LIKE INTRINSIC PROTEIN 4;1, NOD26-LIKE MIP 4  gene NIP4;1  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_function water channel activity|GO:0015250||ISS  product NIP4;1 (NOD26-LIKE INTRINSIC PROTEIN 4;1); water channel  note NOD26-LIKE INTRINSIC PROTEIN 4;1 (NIP4;1); FUNCTIONS IN: water channel activity; INVOLVED IN: transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: NIP4;2 (NOD26-LIKE INTRINSIC PROTEIN 4;2); water channel (TAIR:AT5G37820.1); Has 6995 Blast hits to 6917 proteins in 1263 species: Archae - 61; Bacteria - 2759; Metazoa - 1286; Fungi - 297; Plants - 1410; Viruses - 4; Other Eukaryotes - 1178 (source: NCBI BLink).  protein_id AT5G37810.1p  transcript_id AT5G37810.1  protein_id AT5G37810.1p  transcript_id AT5G37810.1  
At5g37820	chr5:015050261	0.0	W/15050261-15050392,15050499-15050723,15050858-15051055,15051143-15051204,15051308-15051542	AT5G37820.1  CDS  gene_syn K22F20.60, K22F20_60, NIP4;2, NLM5, NOD26-LIKE INTRINSIC PROTEIN 4;2, NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5  gene NIP4;2  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_function water channel activity|GO:0015250||ISS  product NIP4;2 (NOD26-LIKE INTRINSIC PROTEIN 4;2); water channel  note NOD26-LIKE INTRINSIC PROTEIN 4;2 (NIP4;2); FUNCTIONS IN: water channel activity; INVOLVED IN: transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: flower, root, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: NIP4;1 (NOD26-LIKE INTRINSIC PROTEIN 4;1); water channel (TAIR:AT5G37810.1); Has 6986 Blast hits to 6958 proteins in 1264 species: Archae - 61; Bacteria - 2736; Metazoa - 1291; Fungi - 299; Plants - 1413; Viruses - 4; Other Eukaryotes - 1182 (source: NCBI BLink).  protein_id AT5G37820.1p  transcript_id AT5G37820.1  protein_id AT5G37820.1p  transcript_id AT5G37820.1  
At5g37830	chr5:015057038	0.0	C/15057038-15060525,15056635-15056947	AT5G37830.1  CDS  gene_syn K22F20.70, K22F20_70, OXOPROLINASE 1, OXP1  gene OXP1  function Encodes a 5-oxoprolinase that acts in the glutathione degradation pathway and in 5-oxoproline metabolism.  go_component cytoplasm|GO:0005737|18768907|NAS  go_process glutathione catabolic process|GO:0006751|18768907|IMP  go_function hydrolase activity|GO:0016787||ISS  go_function 5-oxoprolinase (ATP-hydrolyzing) activity|GO:0017168|18768907|IMP  product OXP1 (OXOPROLINASE 1); 5-oxoprolinase (ATP-hydrolyzing)/ hydrolase  note OXOPROLINASE 1 (OXP1); FUNCTIONS IN: hydrolase activity, 5-oxoprolinase (ATP-hydrolyzing) activity; INVOLVED IN: glutathione catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hydantoinase B/oxoprolinase (InterPro:IPR003692), Hydantoinase/oxoprolinase (InterPro:IPR002821), Hydantoinaseoxoprolinase, N-terminal (InterPro:IPR008040); Has 4944 Blast hits to 4936 proteins in 477 species: Archae - 169; Bacteria - 1575; Metazoa - 102; Fungi - 271; Plants - 19; Viruses - 0; Other Eukaryotes - 2808 (source: NCBI BLink).  protein_id AT5G37830.1p  transcript_id AT5G37830.1  protein_id AT5G37830.1p  transcript_id AT5G37830.1  
At5g37840	chr5:015062737	0.0	C/15062737-15063327,15062192-15062245	AT5G37840.1  CDS  gene_syn K22F20.80, K22F20_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: PMI2 (plastid movement impaired 2) (TAIR:AT1G66480.1); Has 49 Blast hits to 49 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G37840.1p  transcript_id AT5G37840.1  protein_id AT5G37840.1p  transcript_id AT5G37840.1  
At5g37850	chr5:015065394	0.0	W/15065394-15065479,15065605-15065701,15066465-15066558,15066674-15066778,15067113-15067196,15067385-15067458,15067581-15067645,15067865-15067928,15068071-15068136,15068217-15068273,15068369-15068413,15068510-15068563,15068643-15068783	AT5G37850.1  CDS  gene_syn ATSOS4, K18L3.1, K18L3_1, SALT OVERLY SENSITIVE 4, SOS4  gene SOS4  function Encodes a pyridoxal kinase required for root hair development. Mutants are hypersensitive to Na+, K+ and Li+.  go_component chloroplast|GO:0009507||IEA  go_process pyridoxine biosynthetic process|GO:0008615|11910005|TAS  go_process pyridoxal 5 -phosphate salvage|GO:0009443|12244454|IDA  go_process trichoblast differentiation|GO:0010054|12068103|IMP  go_process hyperosmotic salinity response|GO:0042538|11910005|IMP  go_function pyridoxal kinase activity|GO:0008478|11910005|IGI  go_function pyridoxal kinase activity|GO:0008478|12244454|IDA  go_function kinase activity|GO:0016301||ISS  product SOS4 (SALT OVERLY SENSITIVE 4); kinase/ pyridoxal kinase  note SALT OVERLY SENSITIVE 4 (SOS4); FUNCTIONS IN: pyridoxal kinase activity, kinase activity; INVOLVED IN: pyridoxine biosynthetic process, trichoblast differentiation, hyperosmotic salinity response, pyridoxal 5 -phosphate salvage; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate (active vitamin B6) biosynthesis, pyridoxal kinase (InterPro:IPR004625), Phosphomethylpyrimidine kinase type-1 (InterPro:IPR013749); Has 3426 Blast hits to 3425 proteins in 1014 species: Archae - 56; Bacteria - 2561; Metazoa - 165; Fungi - 124; Plants - 39; Viruses - 0; Other Eukaryotes - 481 (source: NCBI BLink).  protein_id AT5G37850.1p  transcript_id AT5G37850.1  protein_id AT5G37850.1p  transcript_id AT5G37850.1  
At5g37850	chr5:015065621	0.0	W/15065621-15065701,15066465-15066558,15066674-15066778,15067113-15067196,15067385-15067458,15067581-15067645,15067865-15067928,15068071-15068136,15068217-15068273,15068369-15068413,15068510-15068563,15068643-15068783	AT5G37850.2  CDS  gene_syn ATSOS4, K18L3.1, K18L3_1, SALT OVERLY SENSITIVE 4, SOS4  gene SOS4  function Encodes a pyridoxal kinase required for root hair development. Mutants are hypersensitive to Na+, K+ and Li+.  go_process pyridoxine biosynthetic process|GO:0008615|11910005|TAS  go_process pyridoxal 5 -phosphate salvage|GO:0009443|12244454|IDA  go_process trichoblast differentiation|GO:0010054|12068103|IMP  go_process hyperosmotic salinity response|GO:0042538|11910005|IMP  go_function pyridoxal kinase activity|GO:0008478|11910005|IGI  go_function pyridoxal kinase activity|GO:0008478|12244454|IDA  go_function kinase activity|GO:0016301||ISS  product SOS4 (SALT OVERLY SENSITIVE 4); kinase/ pyridoxal kinase  note SALT OVERLY SENSITIVE 4 (SOS4); FUNCTIONS IN: pyridoxal kinase activity, kinase activity; INVOLVED IN: pyridoxine biosynthetic process, trichoblast differentiation, hyperosmotic salinity response, pyridoxal 5 -phosphate salvage; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate (active vitamin B6) biosynthesis, pyridoxal kinase (InterPro:IPR004625), Phosphomethylpyrimidine kinase type-1 (InterPro:IPR013749); Has 3425 Blast hits to 3424 proteins in 1014 species: Archae - 56; Bacteria - 2561; Metazoa - 165; Fungi - 124; Plants - 39; Viruses - 0; Other Eukaryotes - 480 (source: NCBI BLink).  protein_id AT5G37850.2p  transcript_id AT5G37850.2  protein_id AT5G37850.2p  transcript_id AT5G37850.2  
At5g37860	chr5:015070526	0.0	C/15070526-15070555,15070348-15070423,15069578-15070260	AT5G37860.1  CDS  gene_syn K18L3.3, K18L3_3  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_process copper ion transport|GO:0006825||ISS  go_function copper ion binding|GO:0005507||ISS  product copper-binding family protein  note copper-binding family protein; FUNCTIONS IN: copper ion binding, metal ion binding; INVOLVED IN: copper ion transport, metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT3G05220.1); Has 607 Blast hits to 577 proteins in 42 species: Archae - 0; Bacteria - 6; Metazoa - 4; Fungi - 6; Plants - 584; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G37860.1p  transcript_id AT5G37860.1  protein_id AT5G37860.1p  transcript_id AT5G37860.1  
At5g37870	chr5:015074678	0.0	C/15074678-15074851,15073764-15074435	AT5G37870.1  CDS  gene_syn K18L3.4, K18L3_4  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_process multicellular organismal development|GO:0007275||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_process multicellular organismal development|GO:0007275||ISS  product seven in absentia (SINA) family protein  note seven in absentia (SINA) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: multicellular organismal development, ubiquitin-dependent protein catabolic process, protein ubiquitination; LOCATED IN: nucleus, intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, RING-type, conserved site (InterPro:IPR017907), TRAF-like (InterPro:IPR008974), Seven in absentia protein, TRAF-like domain (InterPro:IPR018121), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, SIAH-type (InterPro:IPR013010), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven in absentia protein (InterPro:IPR004162); BEST Arabidopsis thaliana protein match is: seven in absentia (SINA) family protein (TAIR:AT5G37910.1); Has 1413 Blast hits to 1403 proteins in 637 species: Archae - 0; Bacteria - 0; Metazoa - 1101; Fungi - 15; Plants - 243; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT5G37870.1p  transcript_id AT5G37870.1  protein_id AT5G37870.1p  transcript_id AT5G37870.1  
At5g37872	chr5:015079744	0.0	W/15079744-15081114	AT5G37872.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 4.4e-54 P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At5g37875	chr5:015081742	0.0	W/15081742-15083988	AT5G37875.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 8.0e-38 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At5g37880	chr5:015084460	0.0	C/15084460-15084988	AT5G37880.1  mRNA_TE_gene  pseudo  gene_syn K18L3.7, K18L3_7  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G18420.1); similar to hypothetical protein 26.t00076 [Brassica oleracea] (GB:ABD65021.1)  
At5g37890	chr5:015091631	0.0	C/15091631-15091822,15090512-15091180	AT5G37890.1  CDS  gene_syn K18L3.9, K18L3_9  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_process multicellular organismal development|GO:0007275||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_process multicellular organismal development|GO:0007275||ISS  product seven in absentia (SINA) protein, putative  note seven in absentia (SINA) protein, putative; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus, intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, RING-type, conserved site (InterPro:IPR017907), TRAF-like (InterPro:IPR008974), Seven in absentia protein, TRAF-like domain (InterPro:IPR018121), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, SIAH-type (InterPro:IPR013010), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven in absentia protein (InterPro:IPR004162); BEST Arabidopsis thaliana protein match is: seven in absentia (SINA) family protein (TAIR:AT5G37910.1); Has 1375 Blast hits to 1367 proteins in 643 species: Archae - 0; Bacteria - 0; Metazoa - 1029; Fungi - 25; Plants - 243; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT5G37890.1p  transcript_id AT5G37890.1  protein_id AT5G37890.1p  transcript_id AT5G37890.1  
At5g37900	chr5:015094659	0.0	C/15094659-15094802,15093903-15094484	AT5G37900.1  CDS  gene_syn K18L3.10, K18L3_10  go_component plasma membrane|GO:0005886|14506206|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_process multicellular organismal development|GO:0007275||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_process multicellular organismal development|GO:0007275||ISS  product seven in absentia (SINA) family protein  note seven in absentia (SINA) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus, plasma membrane; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Seven in absentia protein, TRAF-like domain (InterPro:IPR018121), Zinc finger, SIAH-type (InterPro:IPR013010), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven in absentia protein (InterPro:IPR004162); BEST Arabidopsis thaliana protein match is: seven in absentia (SINA) family protein (TAIR:AT5G37910.1); Has 944 Blast hits to 939 proteins in 590 species: Archae - 0; Bacteria - 0; Metazoa - 794; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT5G37900.1p  transcript_id AT5G37900.1  protein_id AT5G37900.1p  transcript_id AT5G37900.1  
At5g37910	chr5:015097166	0.0	C/15097166-15097318,15096210-15096887	AT5G37910.1  CDS  gene_syn K18L3.11, K18L3_11  go_component nucleus|GO:0005634||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_process multicellular organismal development|GO:0007275||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_process multicellular organismal development|GO:0007275||ISS  product seven in absentia (SINA) family protein  note seven in absentia (SINA) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: multicellular organismal development, ubiquitin-dependent protein catabolic process, protein ubiquitination; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), TRAF-like (InterPro:IPR008974), Seven in absentia protein, TRAF-like domain (InterPro:IPR018121), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, SIAH-type (InterPro:IPR013010), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven in absentia protein (InterPro:IPR004162); BEST Arabidopsis thaliana protein match is: seven in absentia (SINA) protein, putative (TAIR:AT5G37890.1); Has 1404 Blast hits to 1395 proteins in 639 species: Archae - 0; Bacteria - 0; Metazoa - 1087; Fungi - 20; Plants - 242; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT5G37910.1p  transcript_id AT5G37910.1  protein_id AT5G37910.1p  transcript_id AT5G37910.1  
At5g37920	chr5:015099341	0.0	C/15099341-15101170	AT5G37920.1  CDS  gene_syn K18L3.12, K18L3_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF577 (InterPro:IPR007598); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G37430.1); Has 47 Blast hits to 36 proteins in 2 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G37920.1p  transcript_id AT5G37920.1  protein_id AT5G37920.1p  transcript_id AT5G37920.1  
At5g37930	chr5:015103274	0.0	C/15103274-15103651,15102239-15102910	AT5G37930.1  CDS  gene_syn K18L3.13, K18L3_13  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_process multicellular organismal development|GO:0007275||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_process multicellular organismal development|GO:0007275||ISS  product seven in absentia (SINA) family protein  note seven in absentia (SINA) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: multicellular organismal development, ubiquitin-dependent protein catabolic process, protein ubiquitination; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, RING-type, conserved site (InterPro:IPR017907), TRAF-like (InterPro:IPR008974), Seven in absentia protein, TRAF-like domain (InterPro:IPR018121), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, SIAH-type (InterPro:IPR013010), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven in absentia protein (InterPro:IPR004162); BEST Arabidopsis thaliana protein match is: seven in absentia (SINA) protein, putative (TAIR:AT1G66650.1); Has 1343 Blast hits to 1335 proteins in 643 species: Archae - 0; Bacteria - 0; Metazoa - 1013; Fungi - 15; Plants - 244; Viruses - 4; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT5G37930.1p  transcript_id AT5G37930.1  protein_id AT5G37930.1p  transcript_id AT5G37930.1  
At5g37940	chr5:015107312	0.0	W/15107312-15107563,15107633-15107813,15107899-15108065,15108160-15108242,15108442-15108820	AT5G37940.1  CDS  gene_syn K18L3.100, K18L3_100  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process response to oxidative stress|GO:0006979|7592828|IEP  product NADP-dependent oxidoreductase, putative  note NADP-dependent oxidoreductase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: response to oxidative stress; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: NADP-dependent oxidoreductase, putative (TAIR:AT5G38000.1); Has 11147 Blast hits to 11118 proteins in 1032 species: Archae - 70; Bacteria - 5129; Metazoa - 775; Fungi - 740; Plants - 318; Viruses - 0; Other Eukaryotes - 4115 (source: NCBI BLink).  protein_id AT5G37940.1p  transcript_id AT5G37940.1  protein_id AT5G37940.1p  transcript_id AT5G37940.1  
At5g37950	chr5:015116094	0.0	W/15116094-15116484,15116971-15117617	AT5G37950.2  CDS  gene_syn K18L3.110, K18L3_110  go_process metabolic process|GO:0008152||IEA  go_function transferase activity, transferring hexosyl groups|GO:0016758||IEA  product transferase, transferring hexosyl groups  note transferase, transferring hexosyl groups; FUNCTIONS IN: transferase activity, transferring hexosyl groups; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT5G38010.1); Has 3249 Blast hits to 3240 proteins in 211 species: Archae - 0; Bacteria - 7; Metazoa - 575; Fungi - 9; Plants - 2629; Viruses - 21; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G37950.2p  transcript_id AT5G37950.2  protein_id AT5G37950.2p  transcript_id AT5G37950.2  
At5g37950	chr5:015116094	0.0	W/15116094-15116502,15116971-15117617	AT5G37950.1  CDS  gene_syn K18L3.110, K18L3_110  go_process metabolic process|GO:0008152||IEA  go_function transferase activity, transferring hexosyl groups|GO:0016758||IEA  product transferase, transferring hexosyl groups  note transferase, transferring hexosyl groups; FUNCTIONS IN: transferase activity, transferring hexosyl groups; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT5G38010.1); Has 3240 Blast hits to 3231 proteins in 209 species: Archae - 0; Bacteria - 7; Metazoa - 571; Fungi - 9; Plants - 2624; Viruses - 21; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G37950.1p  transcript_id AT5G37950.1  protein_id AT5G37950.1p  transcript_id AT5G37950.1  
At5g37960	chr5:015121438	0.0	W/15121438-15121509,15121582-15121836	AT5G37960.1  CDS  gene_syn K18L3.120, K18L3_120  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  product oxidoreductase-related  note oxidoreductase-related; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: NADP-dependent oxidoreductase, putative (TAIR:AT3G03080.1); Has 825 Blast hits to 825 proteins in 220 species: Archae - 4; Bacteria - 367; Metazoa - 62; Fungi - 9; Plants - 161; Viruses - 0; Other Eukaryotes - 222 (source: NCBI BLink).  protein_id AT5G37960.1p  transcript_id AT5G37960.1  protein_id AT5G37960.1p  transcript_id AT5G37960.1  
At5g37970	chr5:015124590	0.0	C/15124590-15124684,15124358-15124490,15123569-15124246,15123089-15123421	AT5G37970.1  CDS  gene_syn K18L3.130, K18L3_130  go_function methyltransferase activity|GO:0008168||IEA  go_process biological_process|GO:0008150||ND  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757||ISS  product S-adenosyl-L-methionine:carboxyl methyltransferase family protein  note S-adenosyl-L-methionine:carboxyl methyltransferase family protein; FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: S-adenosylmethionine-dependent methyltransferase/ methyltransferase (TAIR:AT5G37990.1); Has 592 Blast hits to 584 proteins in 91 species: Archae - 0; Bacteria - 35; Metazoa - 10; Fungi - 3; Plants - 442; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).  protein_id AT5G37970.1p  transcript_id AT5G37970.1  protein_id AT5G37970.1p  transcript_id AT5G37970.1  
At5g37980	chr5:015131405	0.0	W/15131405-15131656,15131734-15131914,15132027-15132193,15132284-15132366,15132562-15132940	AT5G37980.1  CDS  gene_syn K18L3.140, K18L3_140  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process response to oxidative stress|GO:0006979|7592828|IEP  go_process response to cyclopentenone|GO:0010583|18334669|IEP  product NADP-dependent oxidoreductase, putative  note NADP-dependent oxidoreductase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: response to oxidative stress, response to cyclopentenone; EXPRESSED IN: leaf whorl, inflorescence meristem, root; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: NADP-dependent oxidoreductase, putative (TAIR:AT5G37940.1); Has 11379 Blast hits to 11365 proteins in 1055 species: Archae - 74; Bacteria - 5280; Metazoa - 784; Fungi - 769; Plants - 327; Viruses - 0; Other Eukaryotes - 4145 (source: NCBI BLink).  protein_id AT5G37980.1p  transcript_id AT5G37980.1  protein_id AT5G37980.1p  transcript_id AT5G37980.1  
At5g37990	chr5:015135375	0.0	C/15135375-15135448,15135092-15135224,15134311-15134988,15133867-15134199	AT5G37990.1  CDS  gene_syn K18L3.150, K18L3_150  go_component endomembrane system|GO:0012505||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_process biological_process|GO:0008150||ND  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757||ISS  product S-adenosylmethionine-dependent methyltransferase/ methyltransferase  note S-adenosylmethionine-dependent methyltransferase/ methyltransferase; FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine:carboxyl methyltransferase family protein (TAIR:AT5G37970.1); Has 587 Blast hits to 579 proteins in 90 species: Archae - 0; Bacteria - 33; Metazoa - 10; Fungi - 3; Plants - 442; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).  protein_id AT5G37990.1p  transcript_id AT5G37990.1  protein_id AT5G37990.1p  transcript_id AT5G37990.1  
At5g38000	chr5:015141810	0.0	W/15141810-15142061,15142131-15142311,15142483-15142649,15142725-15142807,15142989-15143367	AT5G38000.1  CDS  gene_syn K19A23.1, K19A23_1  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process response to oxidative stress|GO:0006979|7592828|IEP  product NADP-dependent oxidoreductase, putative  note NADP-dependent oxidoreductase, putative; FUNCTIONS IN: oxidoreductase activity, binding, zinc ion binding, catalytic activity; INVOLVED IN: response to oxidative stress; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: NADP-dependent oxidoreductase, putative (TAIR:AT5G37940.1); Has 11745 Blast hits to 11721 proteins in 1071 species: Archae - 72; Bacteria - 5525; Metazoa - 779; Fungi - 792; Plants - 324; Viruses - 0; Other Eukaryotes - 4253 (source: NCBI BLink).  protein_id AT5G38000.1p  transcript_id AT5G38000.1  protein_id AT5G38000.1p  transcript_id AT5G38000.1  
At5g38005	chr5:015155067	0.0	W/15155067-15156088	AT5G38005.1  ncRNA  function Unknown gene  product other RNA  transcript_id AT5G38005.1  
At5g38010	chr5:015158342	0.0	W/15158342-15158834,15159250-15160118	AT5G38010.1  CDS  gene_syn F16F17.1, F16F17_1  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT5G38040.1); Has 4696 Blast hits to 4665 proteins in 313 species: Archae - 0; Bacteria - 159; Metazoa - 1741; Fungi - 12; Plants - 2710; Viruses - 53; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT5G38010.1p  transcript_id AT5G38010.1  protein_id AT5G38010.1p  transcript_id AT5G38010.1  
At5g38020	chr5:015167547	0.0	C/15167547-15167612,15166674-15167327,15165953-15166339	AT5G38020.1  CDS  gene_syn F16F17.20, F16F17_20  function encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)  go_component cellular_component|GO:0005575||ND  go_process fatty acid biosynthetic process|GO:0006633|10375393|TAS  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757|10852939|ISS  product S-adenosyl-L-methionine:carboxyl methyltransferase family protein  note S-adenosyl-L-methionine:carboxyl methyltransferase family protein; FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: methyltransferase (TAIR:AT3G21950.1); Has 589 Blast hits to 580 proteins in 91 species: Archae - 0; Bacteria - 34; Metazoa - 14; Fungi - 3; Plants - 451; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).  protein_id AT5G38020.1p  transcript_id AT5G38020.1  protein_id AT5G38020.1p  transcript_id AT5G38020.1  
At5g38030	chr5:015175003	0.0	C/15175003-15175302,15174040-15174581,15173851-15173937,15172438-15172494,15172110-15172348,15171829-15171947,15171646-15171732,15171486-15171551	AT5G38030.1  CDS  gene_syn F16F17.3, F16F17_3  go_component membrane|GO:0016020||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_process response to nematode|GO:0009624|16478044|IEP  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transporter activity, transporter activity; INVOLVED IN: response to nematode; LOCATED IN: membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT3G26590.1); Has 6864 Blast hits to 6754 proteins in 1138 species: Archae - 155; Bacteria - 4599; Metazoa - 121; Fungi - 218; Plants - 724; Viruses - 0; Other Eukaryotes - 1047 (source: NCBI BLink).  protein_id AT5G38030.1p  transcript_id AT5G38030.1  protein_id AT5G38030.1p  transcript_id AT5G38030.1  
At5g38035	chr5:015176231	0.0	W/15176231-15180696	AT5G38035.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 9.9e-71 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At5g38037	chr5:015183657	0.0	W/15183657-15184337	AT5G38037.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28010.1); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Protein of unknown function DUF321; (InterPro:IPR005529)  
At5g38040	chr5:015185077	0.0	W/15185077-15185557,15185640-15186508	AT5G38040.1  CDS  gene_syn F16F17.40, F16F17_40  go_process metabolic process|GO:0008152||IEA  go_function transferase activity, transferring hexosyl groups|GO:0016758||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, stem, embryo, sepal, seed; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT5G38010.1); Has 4566 Blast hits to 4539 proteins in 305 species: Archae - 0; Bacteria - 130; Metazoa - 1639; Fungi - 14; Plants - 2694; Viruses - 70; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT5G38040.1p  transcript_id AT5G38040.1  protein_id AT5G38040.1p  transcript_id AT5G38040.1  
At5g38050	chr5:015187592	0.0	W/15187592-15187715,15187826-15188127,15188220-15188639	AT5G38050.1  CDS  gene_syn F16F17.7, F16F17_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G71080.1); Has 1011 Blast hits to 639 proteins in 116 species: Archae - 0; Bacteria - 49; Metazoa - 410; Fungi - 130; Plants - 52; Viruses - 10; Other Eukaryotes - 360 (source: NCBI BLink).  protein_id AT5G38050.1p  transcript_id AT5G38050.1  protein_id AT5G38050.1p  transcript_id AT5G38050.1  
At5g38060	chr5:015189490	0.0	W/15189490-15189739,15189810-15189964	AT5G38060.1  CDS  gene_syn F16F17.60, F16F17_60  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65000.1); Has 23 Blast hits to 23 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G38060.1p  transcript_id AT5G38060.1  protein_id AT5G38060.1p  transcript_id AT5G38060.1  
At5g38060	chr5:015189490	0.0	W/15189490-15189739,15189846-15189964	AT5G38060.2  CDS  gene_syn F16F17.60, F16F17_60  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65000.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G38060.2p  transcript_id AT5G38060.2  protein_id AT5G38060.2p  transcript_id AT5G38060.2  
At5g38070	chr5:015190254	0.0	W/15190254-15190484,15190568-15190639,15190720-15190787,15190884-15191019,15191107-15191187,15191272-15191361,15191487-15191588	AT5G38070.1  CDS  gene_syn F16F17.8, F16F17_8  go_function ubiquitin-protein ligase activity|GO:0004842|15644464|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G01275.2); Has 1214 Blast hits to 1214 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 631; Fungi - 77; Plants - 303; Viruses - 20; Other Eukaryotes - 183 (source: NCBI BLink).  protein_id AT5G38070.1p  transcript_id AT5G38070.1  protein_id AT5G38070.1p  transcript_id AT5G38070.1  
At5g38080	chr5:015192566	0.0	C/15192566-15192645,15192357-15192453,15191715-15192011	AT5G38080.1  CDS  gene_syn F16F17.9, F16F17_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38090.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G38080.1p  transcript_id AT5G38080.1  protein_id AT5G38080.1p  transcript_id AT5G38080.1  
At5g38090	chr5:015194010	0.0	C/15194010-15194089,15193789-15193913,15193466-15193701	AT5G38090.1  CDS  gene_syn F16F17.10, F16F17_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38080.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G38090.1p  transcript_id AT5G38090.1  protein_id AT5G38090.1p  transcript_id AT5G38090.1  
At5g38096	chr5:015198468	0.0	C/15198468-15204265	AT5G38096.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G38100; methyltransferase-related protein  
At5g38100	chr5:015201091	0.0	C/15201091-15201168,15200191-15200859,15199784-15200116	AT5G38100.1  CDS  gene_syn F16F17.100, F16F17_100  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function methyltransferase activity|GO:0008168||ISS  product methyltransferase-related  note methyltransferase-related; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine:carboxyl methyltransferase family protein (TAIR:AT5G38780.1); Has 602 Blast hits to 593 proteins in 96 species: Archae - 0; Bacteria - 44; Metazoa - 12; Fungi - 3; Plants - 444; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).  protein_id AT5G38100.1p  transcript_id AT5G38100.1  protein_id AT5G38100.1p  transcript_id AT5G38100.1  
At5g38110	chr5:015208643	0.0	W/15208643-15208751,15209425-15209540,15209633-15210064	AT5G38110.1  CDS  gene_syn ANTI- SILENCING FUNCTION 1B, ASF1B, F16F17.110, F16F17_110, SGA01, SGA1  gene ASF1B  function This gene is predicted to encode a silencing group A protein. Plant lines expressing RNAi constructs directed against SGA1 have reduced levels of agrobacterium-mediated root transformation.  go_component nucleus|GO:0005634||IEA  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||ISS  go_process DNA mediated transformation|GO:0009294|17827277|IMP  go_function molecular_function|GO:0003674||ND  product ASF1B (ANTI- SILENCING FUNCTION 1B)  note ANTI- SILENCING FUNCTION 1B (ASF1B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA mediated transformation, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Histone chaperone, ASF1-like (InterPro:IPR006818); BEST Arabidopsis thaliana protein match is: SGA2 (TAIR:AT1G66740.1); Has 448 Blast hits to 448 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 190; Fungi - 123; Plants - 45; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT5G38110.1p  transcript_id AT5G38110.1  protein_id AT5G38110.1p  transcript_id AT5G38110.1  
At5g38120	chr5:015213773	0.0	W/15213773-15215003,15215397-15215533,15215637-15215704,15215829-15215931,15216024-15216137	AT5G38120.1  CDS  gene_syn MXA21.2, MXA21_2  go_process metabolic process|GO:0008152||IEA  go_function 4-coumarate-CoA ligase activity|GO:0016207||ISS  product 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein  note 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein; FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: 4-coumarate-CoA ligase (TAIR:AT1G20500.1); Has 54521 Blast hits to 50388 proteins in 2232 species: Archae - 579; Bacteria - 29335; Metazoa - 3003; Fungi - 3070; Plants - 1301; Viruses - 1; Other Eukaryotes - 17232 (source: NCBI BLink).  protein_id AT5G38120.1p  transcript_id AT5G38120.1  protein_id AT5G38120.1p  transcript_id AT5G38120.1  
At5g38130	chr5:015217956	0.0	C/15217956-15219344	AT5G38130.1  CDS  gene_syn MXA21.5, MXA21_5  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT3G50300.1); Has 1228 Blast hits to 1221 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 116; Plants - 1112; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G38130.1p  transcript_id AT5G38130.1  protein_id AT5G38130.1p  transcript_id AT5G38130.1  
At5g38140	chr5:015221915	0.0	C/15221915-15222025,15221754-15221832,15221594-15221655,15221142-15221348,15220996-15221067,15220840-15220893,15220377-15220379	AT5G38140.1  CDS  gene_syn MXA21.21, MXA21_21, NF-YC12, NUCLEAR FACTOR Y, SUBUNIT C12  gene NF-YC12  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YC12 (NUCLEAR FACTOR Y, SUBUNIT C12); DNA binding / transcription factor  note NUCLEAR FACTOR Y, SUBUNIT C12 (NF-YC12); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958); BEST Arabidopsis thaliana protein match is: NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2); DNA binding / transcription activator/ transcription factor (TAIR:AT1G56170.2); Has 720 Blast hits to 720 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 284; Fungi - 140; Plants - 230; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT5G38140.1p  transcript_id AT5G38140.1  protein_id AT5G38140.1p  transcript_id AT5G38140.1  
At5g38150	chr5:015224876	0.0	C/15224876-15224935,15223116-15224780	AT5G38150.1  CDS  gene_syn MXA21.20, MXA21_20, PMI15, plastid movement impaired 15  gene PMI15  function Involved in chloroplast avoidance movement under high-light intensities  go_component cellular_component|GO:0005575||ND  go_process response to blue light|GO:0009637|16778016|IMP  go_process chloroplast avoidance movement|GO:0009903|16778016|IMP  go_function molecular_function|GO:0003674||ND  product PMI15 (plastid movement impaired 15)  note plastid movement impaired 15 (PMI15); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to blue light, chloroplast avoidance movement; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G66840.1); Has 32359 Blast hits to 19305 proteins in 1077 species: Archae - 478; Bacteria - 3241; Metazoa - 16916; Fungi - 2290; Plants - 1374; Viruses - 58; Other Eukaryotes - 8002 (source: NCBI BLink).  protein_id AT5G38150.1p  transcript_id AT5G38150.1  protein_id AT5G38150.1p  transcript_id AT5G38150.1  
At5g38155	chr5:015225318	0.0	W/15225318-15225391	AT5G38155.1  tRNA  gene_syn 67736.TRNA-VAL-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Val (anticodon: CAC)  transcript_id AT5G38155.1  
At5g38160	chr5:015225836	0.0	W/15225836-15226147	AT5G38160.1  CDS  gene_syn MXA21.18, MXA21_18  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT5G38170.1); Has 193 Blast hits to 190 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 193; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G38160.1p  transcript_id AT5G38160.1  protein_id AT5G38160.1p  transcript_id AT5G38160.1  
At5g38170	chr5:015227717	0.0	W/15227717-15228028	AT5G38170.1  CDS  gene_syn MXA21.17, MXA21_17  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT5G38160.1); Has 192 Blast hits to 189 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 192; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G38170.1p  transcript_id AT5G38170.1  protein_id AT5G38170.1p  transcript_id AT5G38170.1  
At5g38180	chr5:015229856	0.0	W/15229856-15230143	AT5G38180.1  CDS  gene_syn MXA21.16, MXA21_16  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT5G38195.1); Has 185 Blast hits to 183 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 185; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G38180.1p  transcript_id AT5G38180.1  protein_id AT5G38180.1p  transcript_id AT5G38180.1  
At5g38190	chr5:015234188	0.0	W/15234188-15235021,15235201-15235815,15235915-15236219,15236261-15236822,15237100-15237162,15237296-15237613,15237694-15237906	AT5G38190.1  CDS  gene_syn MXA21.14, MXA21_14  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product myosin heavy chain-related  note myosin heavy chain-related; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT1G32010.1); Has 253 Blast hits to 232 proteins in 40 species: Archae - 0; Bacteria - 11; Metazoa - 91; Fungi - 12; Plants - 64; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT5G38190.1p  transcript_id AT5G38190.1  protein_id AT5G38190.1p  transcript_id AT5G38190.1  
At5g38192	chr5:015238555	0.0	C/15238555-15244741	AT5G38192.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 2.6e-236 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At5g38195	chr5:015246991	0.0	W/15246991-15247278	AT5G38195.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38197.1); Has 202 Blast hits to 199 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 202; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G38195.1p  transcript_id AT5G38195.1  protein_id AT5G38195.1p  transcript_id AT5G38195.1  
At5g38197	chr5:015251024	0.0	W/15251024-15251314	AT5G38197.1  CDS  function Encodes a Protease inhibitor/seed storage/LTP family protein  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  product unknown protein  note INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT5G38195.1); Has 171 Blast hits to 169 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G38197.1p  transcript_id AT5G38197.1  protein_id AT5G38197.1p  transcript_id AT5G38197.1  
At5g38200	chr5:015256383	0.0	W/15256383-15256494,15256668-15256981,15257059-15257475,15257557-15257766,15258217-15258474	AT5G38200.1  CDS  gene_syn MXA21.22  go_process glutamine metabolic process|GO:0006541||IEA  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  product hydrolase  note hydrolase; FUNCTIONS IN: hydrolase activity; INVOLVED IN: glutamine metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Peptidase C26 (InterPro:IPR011697), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: hydrolase (TAIR:AT1G66860.1); Has 2060 Blast hits to 2059 proteins in 580 species: Archae - 8; Bacteria - 1443; Metazoa - 0; Fungi - 2; Plants - 26; Viruses - 0; Other Eukaryotes - 581 (source: NCBI BLink).  protein_id AT5G38200.1p  transcript_id AT5G38200.1  protein_id AT5G38200.1p  transcript_id AT5G38200.1  
At5g38210	chr5:015261035	0.0	W/15261035-15261791,15263892-15263924,15264028-15264666,15264745-15265376	AT5G38210.1  CDS  gene_syn MXA21.10, MXA21_10  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function protein serine/threonine kinase activity|GO:0004674||ISS  product serine/threonine protein kinase family protein  note serine/threonine protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase family protein (TAIR:AT1G66880.1); Has 93122 Blast hits to 91803 proteins in 3420 species: Archae - 67; Bacteria - 8347; Metazoa - 40384; Fungi - 7701; Plants - 19791; Viruses - 469; Other Eukaryotes - 16363 (source: NCBI BLink).  protein_id AT5G38210.1p  transcript_id AT5G38210.1  protein_id AT5G38210.1p  transcript_id AT5G38210.1  
At5g38220	chr5:015269012	0.0	W/15269012-15269307,15269919-15269955,15270064-15270300,15270378-15270425,15270748-15271140	AT5G38220.1  CDS  gene_syn MXA21.9, MXA21_9  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product hydrolase  note hydrolase; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase/carboxylesterase (InterPro:IPR003140); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G66900.1); Has 2836 Blast hits to 2834 proteins in 470 species: Archae - 0; Bacteria - 684; Metazoa - 538; Fungi - 117; Plants - 153; Viruses - 6; Other Eukaryotes - 1338 (source: NCBI BLink).  protein_id AT5G38220.1p  transcript_id AT5G38220.1  protein_id AT5G38220.1p  transcript_id AT5G38220.1  
At5g38220	chr5:015269012	0.0	W/15269012-15269307,15269919-15269955,15270064-15270300,15270378-15270425,15270748-15271140	AT5G38220.3  CDS  gene_syn MXA21.9, MXA21_9  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product hydrolase  note hydrolase; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase/carboxylesterase (InterPro:IPR003140); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G66900.1); Has 2836 Blast hits to 2834 proteins in 470 species: Archae - 0; Bacteria - 684; Metazoa - 538; Fungi - 117; Plants - 153; Viruses - 6; Other Eukaryotes - 1338 (source: NCBI BLink).  protein_id AT5G38220.3p  transcript_id AT5G38220.3  protein_id AT5G38220.3p  transcript_id AT5G38220.3  
At5g38220	chr5:015269012	0.0	W/15269012-15269307,15269919-15269955,15270064-15270300,15270378-15270425,15270758-15270856	AT5G38220.2  CDS  gene_syn MXA21.9, MXA21_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G66900.1); Has 2472 Blast hits to 2471 proteins in 418 species: Archae - 0; Bacteria - 561; Metazoa - 481; Fungi - 109; Plants - 147; Viruses - 6; Other Eukaryotes - 1168 (source: NCBI BLink).  protein_id AT5G38220.2p  transcript_id AT5G38220.2  protein_id AT5G38220.2p  transcript_id AT5G38220.2  
At5g38230	chr5:015274326	0.0	W/15274326-15276766	AT5G38230.1  mRNA_TE_gene  pseudo  gene_syn MXA21.8, MXA21_8  note Transposable element gene, CACTA-like transposase family (Tnp1/En/Spm), has a 8.5e-53 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)  
At5g38240	chr5:015278564	0.0	C/15278564-15279317,15278390-15278488,15277239-15278152	AT5G38240.1  CDS  gene_syn MXA21.130, MXA21_130  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product serine/threonine protein kinase, putative  note serine/threonine protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase, putative (TAIR:AT5G38250.1); Has 82485 Blast hits to 81532 proteins in 3023 species: Archae - 73; Bacteria - 6995; Metazoa - 36429; Fungi - 6364; Plants - 18272; Viruses - 334; Other Eukaryotes - 14018 (source: NCBI BLink).  protein_id AT5G38240.1p  transcript_id AT5G38240.1  protein_id AT5G38240.1p  transcript_id AT5G38240.1  
At5g38250	chr5:015281965	0.0	C/15281965-15282709,15281794-15281838,15281598-15281673,15280643-15281516	AT5G38250.1  CDS  gene_syn MXA21.140, MXA21_140  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product serine/threonine protein kinase, putative  note serine/threonine protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase, putative (TAIR:AT5G38240.1); Has 76951 Blast hits to 76021 proteins in 2620 species: Archae - 55; Bacteria - 6392; Metazoa - 33933; Fungi - 5668; Plants - 17665; Viruses - 307; Other Eukaryotes - 12931 (source: NCBI BLink).  protein_id AT5G38250.1p  transcript_id AT5G38250.1  protein_id AT5G38250.1p  transcript_id AT5G38250.1  
At5g38260	chr5:015285048	0.0	C/15285048-15285837,15283692-15284818	AT5G38260.1  CDS  gene_syn MXA21.150, MXA21_150  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product serine/threonine protein kinase, putative  note serine/threonine protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT1G66910.1); Has 84084 Blast hits to 82862 proteins in 3073 species: Archae - 60; Bacteria - 7013; Metazoa - 37616; Fungi - 6559; Plants - 18400; Viruses - 306; Other Eukaryotes - 14130 (source: NCBI BLink).  protein_id AT5G38260.1p  transcript_id AT5G38260.1  protein_id AT5G38260.1p  transcript_id AT5G38260.1  
At5g38270	chr5:015289032	0.0	W/15289032-15290252	AT5G38270.1  CDS  gene_syn MXA21.4, MXA21_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: ubiquitin-protein ligase (TAIR:AT2G03560.1); Has 216 Blast hits to 208 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 216; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G38270.1p  transcript_id AT5G38270.1  protein_id AT5G38270.1p  transcript_id AT5G38270.1  
At5g38275	chr5:015290725	0.0	C/15290725-15292125	AT5G38275.1  pseudogenic_transcript  pseudo  note pseudogene, similar to SCUTL1, blastp match of 57% identity and 1.0e-38 P-value to GP|6273383|gb|AAF06346.1|AF195653_1|AF195653 SCUTL1 {Vitis vinifera}  
At5g38280	chr5:015295778	0.0	C/15295778-15295838,15295000-15295687,15294683-15294738,15294567-15294599,15293325-15294484	AT5G38280.1  CDS  gene_syn MXA21.170, MXA21_170, PR5K  gene PR5K  function putative receptor serine/threonine kinase PR5K (PR5K) mRNA, PR5-like receptor kinase  go_component endomembrane system|GO:0012505||IEA  go_process response to fungus|GO:0009620|8637920|ISS  go_function transmembrane receptor protein serine/threonine kinase activity|GO:0004675|8637920|ISS  go_function kinase activity|GO:0016301||ISS  product PR5K; kinase/ transmembrane receptor protein serine/threonine kinase  note PR5K; FUNCTIONS IN: transmembrane receptor protein serine/threonine kinase activity, kinase activity; INVOLVED IN: response to fungus; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Thaumatin, conserved site (InterPro:IPR017949), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: receptor serine/threonine kinase, putative (TAIR:AT1G70250.1); Has 85960 Blast hits to 84853 proteins in 3176 species: Archae - 71; Bacteria - 6958; Metazoa - 37840; Fungi - 6870; Plants - 19396; Viruses - 319; Other Eukaryotes - 14506 (source: NCBI BLink).  protein_id AT5G38280.1p  transcript_id AT5G38280.1  protein_id AT5G38280.1p  transcript_id AT5G38280.1  
At5g38285	chr5:015298033	0.0	C/15298033-15300708	AT5G38285.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.1e-22 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At5g38290	chr5:015303491	0.0	W/15303491-15303494,15303595-15303812,15303907-15303991,15304083-15304150,15304281-15304331,15304416-15304489,15304896-15304954,15305038-15305114,15305265-15305381	AT5G38290.2  CDS  gene_syn MSI17.2, MSI17_2  go_component chloroplast|GO:0009507||IEA  go_process translation|GO:0006412||IEA  go_function aminoacyl-tRNA hydrolase activity|GO:0004045||IEA  go_process translation|GO:0006412||ISS  go_function aminoacyl-tRNA hydrolase activity|GO:0004045||ISS  product peptidyl-tRNA hydrolase family protein  note peptidyl-tRNA hydrolase family protein; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, conserved site (InterPro:IPR018171), Peptidyl-tRNA hydrolase (InterPro:IPR001328); BEST Arabidopsis thaliana protein match is: peptidyl-tRNA hydrolase family protein (TAIR:AT5G16140.2); Has 5389 Blast hits to 5386 proteins in 1410 species: Archae - 0; Bacteria - 2883; Metazoa - 37; Fungi - 40; Plants - 77; Viruses - 0; Other Eukaryotes - 2352 (source: NCBI BLink).  protein_id AT5G38290.2p  transcript_id AT5G38290.2  protein_id AT5G38290.2p  transcript_id AT5G38290.2  
At5g38290	chr5:015303603	0.0	W/15303603-15303812,15303907-15303991,15304083-15304150,15304281-15304331,15304416-15304489,15304896-15304954,15305038-15305114,15305265-15305381	AT5G38290.1  CDS  gene_syn MSI17.2, MSI17_2  go_component chloroplast|GO:0009507||IEA  go_process translation|GO:0006412||IEA  go_function aminoacyl-tRNA hydrolase activity|GO:0004045||IEA  go_process translation|GO:0006412||ISS  go_function aminoacyl-tRNA hydrolase activity|GO:0004045||ISS  product peptidyl-tRNA hydrolase family protein  note peptidyl-tRNA hydrolase family protein; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, conserved site (InterPro:IPR018171), Peptidyl-tRNA hydrolase (InterPro:IPR001328); BEST Arabidopsis thaliana protein match is: peptidyl-tRNA hydrolase family protein (TAIR:AT5G16140.2); Has 5389 Blast hits to 5386 proteins in 1410 species: Archae - 0; Bacteria - 2883; Metazoa - 37; Fungi - 40; Plants - 77; Viruses - 0; Other Eukaryotes - 2352 (source: NCBI BLink).  protein_id AT5G38290.1p  transcript_id AT5G38290.1  protein_id AT5G38290.1p  transcript_id AT5G38290.1  
At5g38300	chr5:015306022	0.0	W/15306022-15306813	AT5G38300.1  CDS  gene_syn MSI17.3, MSI17_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67035.1); Has 48 Blast hits to 48 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G38300.1p  transcript_id AT5G38300.1  protein_id AT5G38300.1p  transcript_id AT5G38300.1  
At5g38310	chr5:015310681	0.0	C/15310681-15311247	AT5G38310.1  CDS  gene_syn MSI17.4, MSI17_4  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 9 Blast hits to 9 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G38310.1p  transcript_id AT5G38310.1  protein_id AT5G38310.1p  transcript_id AT5G38310.1  
At5g38314	chr5:015312956	0.0	C/15312956-15313078	AT5G38314.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G38314.1p  transcript_id AT5G38314.1  protein_id AT5G38314.1p  transcript_id AT5G38314.1  
At5g38317	chr5:015314060	0.0	W/15314060-15314117,15314901-15315226	AT5G38317.1  CDS  gene_syn LCR58, Low-molecular-weight cysteine-rich 58  gene LCR58  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR58 (Low-molecular-weight cysteine-rich 58)  note Low-molecular-weight cysteine-rich 58 (LCR58); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: LCR80 (Low-molecular-weight cysteine-rich 80) (TAIR:AT5G38330.1); Has 82 Blast hits to 82 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT5G38317.1p  transcript_id AT5G38317.1  protein_id AT5G38317.1p  transcript_id AT5G38317.1  
At5g38320	chr5:015316160	0.0	C/15316160-15316798	AT5G38320.1  CDS  gene_syn MSI17.5, MSI17_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, sepal, pedicel; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67050.1); Has 29 Blast hits to 29 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G38320.1p  transcript_id AT5G38320.1  protein_id AT5G38320.1p  transcript_id AT5G38320.1  
At5g38320	chr5:015316436	0.0	C/15316436-15316798,15316160-15316321	AT5G38320.2  CDS  gene_syn MSI17.5, MSI17_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, sepal, pedicel; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67050.1); Has 49 Blast hits to 28 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G38320.2p  transcript_id AT5G38320.2  protein_id AT5G38320.2p  transcript_id AT5G38320.2  
At5g38330	chr5:015317767	0.0	W/15317767-15317824,15318135-15318445	AT5G38330.1  CDS  gene_syn LCR80, Low-molecular-weight cysteine-rich 80, MSI17.50, MSI17_50  gene LCR80  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952|18674922|ISS  go_function molecular_function|GO:0003674||ND  product LCR80 (Low-molecular-weight cysteine-rich 80)  note Low-molecular-weight cysteine-rich 80 (LCR80); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: embryo; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: LCR58 (Low-molecular-weight cysteine-rich 58) (TAIR:AT5G38317.1); Has 49 Blast hits to 49 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G38330.1p  transcript_id AT5G38330.1  protein_id AT5G38330.1p  transcript_id AT5G38330.1  
At5g38340	chr5:015320507	0.0	W/15320507-15321108,15321279-15322410,15322516-15322809,15322910-15324061	AT5G38340.1  CDS  gene_syn MSI17.60, MSI17_60  go_component endomembrane system|GO:0012505||IEA  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane, endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT1G65850.1); Has 18536 Blast hits to 13275 proteins in 560 species: Archae - 20; Bacteria - 1203; Metazoa - 2484; Fungi - 99; Plants - 13954; Viruses - 12; Other Eukaryotes - 764 (source: NCBI BLink).  protein_id AT5G38340.1p  transcript_id AT5G38340.1  protein_id AT5G38340.1p  transcript_id AT5G38340.1  
At5g38344	chr5:015325950	0.0	W/15325950-15326591	AT5G38344.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  product transmembrane receptor  note transmembrane receptor; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, innate immune response; LOCATED IN: intrinsic to membrane, endomembrane system; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G38340.1); Has 871 Blast hits to 817 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 869; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G38344.1p  transcript_id AT5G38344.1  protein_id AT5G38344.1p  transcript_id AT5G38344.1  
At5g38350	chr5:015328659	0.0	W/15328659-15329780,15329884-15330186,15330452-15331528	AT5G38350.1  CDS  gene_syn MXI10.1, MXI10_1  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process defense response|GO:0006952||ISS  product disease resistance protein (NBS-LRR class), putative  note disease resistance protein (NBS-LRR class), putative; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT1G65850.1); Has 14577 Blast hits to 10943 proteins in 430 species: Archae - 12; Bacteria - 829; Metazoa - 1495; Fungi - 69; Plants - 11690; Viruses - 0; Other Eukaryotes - 482 (source: NCBI BLink).  protein_id AT5G38350.1p  transcript_id AT5G38350.1  protein_id AT5G38350.1p  transcript_id AT5G38350.1  
At5g38360	chr5:015333242	0.0	C/15333242-15333556,15333074-15333118,15332858-15332990,15332704-15332773,15332556-15332604,15332391-15332488,15332289-15332298	AT5G38360.1  CDS  gene_syn MXI10.2, MXI10_2  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product catalytic  note catalytic; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: MES14 (METHYL ESTERASE 14); hydrolase (TAIR:AT1G33990.1); Has 1461 Blast hits to 1461 proteins in 344 species: Archae - 12; Bacteria - 724; Metazoa - 125; Fungi - 33; Plants - 196; Viruses - 0; Other Eukaryotes - 371 (source: NCBI BLink).  protein_id AT5G38360.1p  transcript_id AT5G38360.1  protein_id AT5G38360.1p  transcript_id AT5G38360.1  
At5g38365	chr5:015334173	0.0	W/15334173-15339896	AT5G38365.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 6.0e-32 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At5g38370	chr5:015340393	0.0	C/15340393-15340695	AT5G38370.1  CDS  gene_syn MXI10.4, MXI10_4  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G80220.1); Has 9 Blast hits to 9 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G38370.1p  transcript_id AT5G38370.1  protein_id AT5G38370.1p  transcript_id AT5G38370.1  
At5g38378	chr5:015344448	0.0	W/15344448-15344711	AT5G38378.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36805.1); Has 42 Blast hits to 42 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G38378.1p  transcript_id AT5G38378.1  protein_id AT5G38378.1p  transcript_id AT5G38378.1  
At5g38380	chr5:015345660	0.0	W/15345660-15345709,15346088-15346280,15346362-15346447,15346743-15346827,15347150-15347228,15347336-15347475,15347565-15347651,15347762-15347874,15347965-15348217	AT5G38380.1  CDS  gene_syn MXI10.5, MXI10_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: cation efflux family protein (TAIR:AT2G04620.1); Has 90 Blast hits to 90 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 66; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G38380.1p  transcript_id AT5G38380.1  protein_id AT5G38380.1p  transcript_id AT5G38380.1  
At5g38380	chr5:015345660	0.0	W/15345660-15345709,15346088-15346280,15346362-15346447,15346743-15346827,15347332-15347475,15347565-15347651,15347762-15347920	AT5G38380.2  CDS  gene_syn MXI10.5, MXI10_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 79 Blast hits to 79 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 56; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G38380.2p  transcript_id AT5G38380.2  protein_id AT5G38380.2p  transcript_id AT5G38380.2  
At5g38383	chr5:015351376	0.0	W/15351376-15360312	AT5G38383.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family (Athila), has a 4.9e-185 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)  
At5g38386	chr5:015363178	0.0	W/15363178-15363588,15363693-15363980,15364060-15364116,15364277-15364417,15364501-15364815	AT5G38386.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G38390.1); Has 1100 Blast hits to 1074 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G38386.1p  transcript_id AT5G38386.1  protein_id AT5G38386.1p  transcript_id AT5G38386.1  
At5g38390	chr5:015366432	0.0	W/15366432-15367328,15367495-15367635,15367721-15368053	AT5G38390.1  CDS  gene_syn MXI10.9, MXI10_9  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G38386.1); Has 1181 Blast hits to 1153 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1181; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G38390.1p  transcript_id AT5G38390.1  protein_id AT5G38390.1p  transcript_id AT5G38390.1  
At5g38393	chr5:015368228	0.0	W/15368228-15372475	AT5G38393.1  pseudogenic_transcript  pseudo  note pseudogene, F-box protein family, similar to F-box protein family  
At5g38396	chr5:015373094	0.0	W/15373094-15374026,15374180-15374320,15374412-15374726	AT5G38396.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product F-box family protein  note F-box family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52650.1); Has 1147 Blast hits to 1110 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1147; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G38396.1p  transcript_id AT5G38396.1  protein_id AT5G38396.1p  transcript_id AT5G38396.1  
At5g38400	chr5:015375846	0.0	W/15375846-15376301	AT5G38400.1  CDS  gene_syn MXI10.12, MXI10_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G38400.1p  transcript_id AT5G38400.1  protein_id AT5G38400.1p  transcript_id AT5G38400.1  
At5g38410	chr5:015378136	0.0	C/15378136-15378306,15377896-15378045,15377501-15377740	AT5G38410.3  CDS  gene_syn MXI10.13, MXI10_13  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function ribulose-bisphosphate carboxylase activity|GO:0016984||IEA  go_component chloroplast ribulose bisphosphate carboxylase complex|GO:0009573||ISS  go_process response to blue light|GO:0009637|18820083|IEP  go_process response to red light|GO:0010114|18820083|IEP  go_process response to far red light|GO:0010218|18820083|IEP  go_process carbon utilization by fixation of carbon dioxide|GO:0015977||ISS  go_function ribulose-bisphosphate carboxylase activity|GO:0016984||ISS  product ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)  note ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B); FUNCTIONS IN: ribulose-bisphosphate carboxylase activity; INVOLVED IN: response to blue light, carbon utilization by fixation of carbon dioxide, response to red light, response to far red light; LOCATED IN: thylakoid, chloroplast ribulose bisphosphate carboxylase complex, apoplast, chloroplast, membrane; EXPRESSED IN: 12 plant structures; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, small chain (InterPro:IPR000894); BEST Arabidopsis thaliana protein match is: ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) (TAIR:AT5G38420.1); Has 29 Blast hits to 29 proteins in 14 species: Archae - 0; Bacteria - 20; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G38410.3p  transcript_id AT5G38410.3  protein_id AT5G38410.3p  transcript_id AT5G38410.3  
At5g38410	chr5:015378136	0.0	C/15378136-15378306,15377911-15378045,15377501-15377719	AT5G38410.2  CDS  gene_syn MXI10.13, MXI10_13  go_component cell wall|GO:0005618|15593128|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function ribulose-bisphosphate carboxylase activity|GO:0016984||IEA  go_component chloroplast ribulose bisphosphate carboxylase complex|GO:0009573||ISS  go_process response to blue light|GO:0009637|18820083|IEP  go_process response to red light|GO:0010114|18820083|IEP  go_process response to far red light|GO:0010218|18820083|IEP  go_process carbon utilization by fixation of carbon dioxide|GO:0015977||ISS  go_function ribulose-bisphosphate carboxylase activity|GO:0016984||ISS  product ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)  note ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B); FUNCTIONS IN: ribulose-bisphosphate carboxylase activity; INVOLVED IN: response to blue light, carbon utilization by fixation of carbon dioxide, response to red light, response to far red light; LOCATED IN: in 7 components; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, small chain (InterPro:IPR000894); BEST Arabidopsis thaliana protein match is: ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) (TAIR:AT5G38420.1); Has 1758 Blast hits to 1737 proteins in 405 species: Archae - 0; Bacteria - 341; Metazoa - 0; Fungi - 0; Plants - 876; Viruses - 0; Other Eukaryotes - 541 (source: NCBI BLink).  protein_id AT5G38410.2p  transcript_id AT5G38410.2  protein_id AT5G38410.2p  transcript_id AT5G38410.2  
At5g38410	chr5:015378136	0.0	C/15378136-15378306,15377911-15378045,15377501-15377740	AT5G38410.1  CDS  gene_syn MXI10.13, MXI10_13  go_component cell wall|GO:0005618|15593128|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function ribulose-bisphosphate carboxylase activity|GO:0016984||IEA  go_component chloroplast ribulose bisphosphate carboxylase complex|GO:0009573||ISS  go_process response to blue light|GO:0009637|18820083|IEP  go_process response to red light|GO:0010114|18820083|IEP  go_process response to far red light|GO:0010218|18820083|IEP  go_process carbon utilization by fixation of carbon dioxide|GO:0015977||ISS  go_function ribulose-bisphosphate carboxylase activity|GO:0016984||ISS  product ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)  note ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B); FUNCTIONS IN: ribulose-bisphosphate carboxylase activity; INVOLVED IN: response to blue light, carbon utilization by fixation of carbon dioxide, response to red light, response to far red light; LOCATED IN: in 8 components; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, small chain (InterPro:IPR000894); BEST Arabidopsis thaliana protein match is: ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) (TAIR:AT5G38420.1); Has 1724 Blast hits to 1703 proteins in 391 species: Archae - 0; Bacteria - 341; Metazoa - 0; Fungi - 0; Plants - 876; Viruses - 0; Other Eukaryotes - 507 (source: NCBI BLink).  protein_id AT5G38410.1p  transcript_id AT5G38410.1  protein_id AT5G38410.1p  transcript_id AT5G38410.1  
At5g38420	chr5:015381808	0.0	C/15381808-15381978,15381583-15381717,15381203-15381442	AT5G38420.1  CDS  gene_syn MXI10.14, MXI10_14  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function ribulose-bisphosphate carboxylase activity|GO:0016984||IEA  go_component chloroplast ribulose bisphosphate carboxylase complex|GO:0009573||ISS  go_process response to blue light|GO:0009637|18820083|IEP  go_process response to red light|GO:0010114|18820083|IEP  go_process response to far red light|GO:0010218|18820083|IEP  go_process carbon utilization by fixation of carbon dioxide|GO:0015977||ISS  go_function ribulose-bisphosphate carboxylase activity|GO:0016984||ISS  product ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B)  note ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B); FUNCTIONS IN: ribulose-bisphosphate carboxylase activity; INVOLVED IN: response to blue light, carbon utilization by fixation of carbon dioxide, response to red light, response to far red light; LOCATED IN: in 8 components; EXPRESSED IN: 10 plant structures; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, small chain (InterPro:IPR000894); BEST Arabidopsis thaliana protein match is: ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B) (TAIR:AT5G38430.1); Has 1722 Blast hits to 1701 proteins in 391 species: Archae - 0; Bacteria - 341; Metazoa - 0; Fungi - 0; Plants - 874; Viruses - 0; Other Eukaryotes - 507 (source: NCBI BLink).  protein_id AT5G38420.1p  transcript_id AT5G38420.1  protein_id AT5G38420.1p  transcript_id AT5G38420.1  
At5g38430	chr5:015384985	0.0	C/15384985-15385155,15384761-15384895,15384350-15384589	AT5G38430.1  CDS  gene_syn MXI10.15, MXI10_15  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function ribulose-bisphosphate carboxylase activity|GO:0016984||IEA  go_component chloroplast ribulose bisphosphate carboxylase complex|GO:0009573||ISS  go_process response to blue light|GO:0009637|18820083|IEP  go_process response to red light|GO:0010114|18820083|IEP  go_process response to far red light|GO:0010218|18820083|IEP  go_process carbon utilization by fixation of carbon dioxide|GO:0015977||ISS  go_function ribulose-bisphosphate carboxylase activity|GO:0016984||ISS  product ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B)  note ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B); FUNCTIONS IN: ribulose-bisphosphate carboxylase activity; INVOLVED IN: response to blue light, carbon utilization by fixation of carbon dioxide, response to red light, response to far red light; LOCATED IN: in 7 components; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, small chain (InterPro:IPR000894); BEST Arabidopsis thaliana protein match is: ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) (TAIR:AT5G38420.1); Has 1738 Blast hits to 1717 proteins in 399 species: Archae - 0; Bacteria - 341; Metazoa - 0; Fungi - 0; Plants - 878; Viruses - 0; Other Eukaryotes - 519 (source: NCBI BLink).  protein_id AT5G38430.1p  transcript_id AT5G38430.1  protein_id AT5G38430.1p  transcript_id AT5G38430.1  
At5g38435	chr5:015388080	0.0	W/15388080-15388478	AT5G38435.1  CDS  gene_syn S-PROTEIN HOMOLOGUE 8, SPH8  gene SPH8  function self-incompatibility (S) protein homolog, expressed at low levels in floral buds and very low levels in other plant tissues  go_component endomembrane system|GO:0012505||IEA  go_process pollen-pistil interaction|GO:0009875|10344198|ISS  go_function molecular_function|GO:0003674||ND  product SPH8 (S-PROTEIN HOMOLOGUE 8)  note S-PROTEIN HOMOLOGUE 8 (SPH8); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen-pistil interaction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: self-incompatibility protein-related (TAIR:AT5G38440.1); Has 67 Blast hits to 67 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G38435.1p  transcript_id AT5G38435.1  protein_id AT5G38435.1p  transcript_id AT5G38435.1  
At5g38437	chr5:015388780	0.0	W/15388780-15389428	AT5G38437.1  mRNA_TE_gene  pseudo  note Transposable element gene  
At5g38440	chr5:015390223	0.0	W/15390223-15390624	AT5G38440.1  CDS  gene_syn MXI10.17, MXI10_17  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product self-incompatibility protein-related  note self-incompatibility protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, C globular stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: SPH8 (S-PROTEIN HOMOLOGUE 8) (TAIR:AT5G38435.1); Has 43 Blast hits to 43 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G38440.1p  transcript_id AT5G38440.1  protein_id AT5G38440.1p  transcript_id AT5G38440.1  
At5g38450	chr5:015396954	0.0	C/15396954-15397233,15396473-15396699,15396150-15396391,15395523-15395907,15394000-15394422	AT5G38450.1  CDS  gene_syn CYP735A1, MXI10.18, MXI10_18  gene CYP735A1  function member of CYP709A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP735A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP735A1; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, root, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP735A2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G67110.1); Has 23933 Blast hits to 23847 proteins in 1289 species: Archae - 42; Bacteria - 2826; Metazoa - 10321; Fungi - 4429; Plants - 5171; Viruses - 6; Other Eukaryotes - 1138 (source: NCBI BLink).  protein_id AT5G38450.1p  transcript_id AT5G38450.1  protein_id AT5G38450.1p  transcript_id AT5G38450.1  
At5g38460	chr5:015400560	0.0	C/15400560-15400987,15400303-15400486,15400100-15400207,15399567-15399728,15399151-15399403,15398592-15399058	AT5G38460.1  CDS  gene_syn MXI10.19, MXI10_19  go_component endoplasmic reticulum membrane|GO:0005789||IEA  go_function transferase activity, transferring hexosyl groups|GO:0016758||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product ALG6, ALG8 glycosyltransferase family protein  note ALG6, ALG8 glycosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; LOCATED IN: endoplasmic reticulum membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyltransferase, ALG6/ALG8 (InterPro:IPR004856); BEST Arabidopsis thaliana protein match is: transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT2G44660.1); Has 504 Blast hits to 492 proteins in 128 species: Archae - 0; Bacteria - 10; Metazoa - 258; Fungi - 169; Plants - 33; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT5G38460.1p  transcript_id AT5G38460.1  protein_id AT5G38460.1p  transcript_id AT5G38460.1  
At5g38470	chr5:015404720	0.0	W/15404720-15404785,15405445-15405603,15405695-15405754,15405869-15405915,15406027-15406080,15406170-15406347,15406470-15406622,15406716-15406781,15406868-15406915,15406995-15407101,15407195-15407273,15407381-15407500	AT5G38470.1  CDS  gene_syn MXI10.20, MXI10_20  go_component nucleus|GO:0005634||IEA  go_function damaged DNA binding|GO:0003684||IEA  go_process nucleotide-excision repair|GO:0006289||ISS  go_process response to cold|GO:0009409|14535880|IEP  go_function damaged DNA binding|GO:0003684||ISS  product DNA repair protein RAD23, putative  note DNA repair protein RAD23, putative; FUNCTIONS IN: damaged DNA binding; INVOLVED IN: response to cold, nucleotide-excision repair; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), UV excision repair protein Rad23 (InterPro:IPR004806), UV excision repair protein Rad23, C-terminal (InterPro:IPR014761), Ubiquitin (InterPro:IPR000626), XPC-binding domain (InterPro:IPR015360), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3); damaged DNA binding (TAIR:AT3G02540.1); Has 8363 Blast hits to 4927 proteins in 738 species: Archae - 4; Bacteria - 553; Metazoa - 3443; Fungi - 1049; Plants - 1653; Viruses - 160; Other Eukaryotes - 1501 (source: NCBI BLink).  protein_id AT5G38470.1p  transcript_id AT5G38470.1  protein_id AT5G38470.1p  transcript_id AT5G38470.1  
At5g38470	chr5:015404720	0.0	W/15404720-15404785,15405445-15405603,15405695-15405754,15405869-15405915,15406027-15406080,15406170-15406347,15406470-15406622,15406716-15406781,15406868-15406915,15406995-15407105,15407195-15407251	AT5G38470.2  CDS  gene_syn MXI10.20, MXI10_20  go_component nucleus|GO:0005634||IEA  go_function damaged DNA binding|GO:0003684||IEA  go_process nucleotide-excision repair|GO:0006289||ISS  go_process response to cold|GO:0009409|14535880|IEP  go_function damaged DNA binding|GO:0003684||ISS  product DNA repair protein RAD23, putative  note DNA repair protein RAD23, putative; FUNCTIONS IN: damaged DNA binding; INVOLVED IN: response to cold, nucleotide-excision repair; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), UV excision repair protein Rad23 (InterPro:IPR004806), Ubiquitin (InterPro:IPR000626), XPC-binding domain (InterPro:IPR015360), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: RAD23; damaged DNA binding (TAIR:AT1G79650.1); Has 8285 Blast hits to 4883 proteins in 736 species: Archae - 4; Bacteria - 534; Metazoa - 3428; Fungi - 1047; Plants - 1646; Viruses - 160; Other Eukaryotes - 1466 (source: NCBI BLink).  protein_id AT5G38470.2p  transcript_id AT5G38470.2  protein_id AT5G38470.2p  transcript_id AT5G38470.2  
At5g38480	chr5:015410277	0.0	W/15410277-15410750,15410829-15410951,15411039-15411155,15411232-15411285	AT5G38480.1  CDS  gene_syn GENERAL REGULATORY FACTOR 3, GF14PSI ISOFORM, GRF3, MXI10.21, MXI10_21, RCI1  gene GRF3  function general regulatory factor, a 14-3-3 gene  go_component cell wall|GO:0005618|16287169|IDA  go_component mitochondrion|GO:0005739|17137349|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_function ATP binding|GO:0005524|17137349|IDA  go_function protein binding|GO:0005515||NAS  go_function protein phosphorylated amino acid binding|GO:0045309|10631267|TAS  product GRF3 (GENERAL REGULATORY FACTOR 3); ATP binding / protein binding / protein phosphorylated amino acid binding  note GENERAL REGULATORY FACTOR 3 (GRF3); FUNCTIONS IN: protein phosphorylated amino acid binding, protein binding, ATP binding; LOCATED IN: mitochondrion, cell wall, chloroplast, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: GRF5 (GENERAL REGULATORY FACTOR 5); ATP binding / protein binding / protein phosphorylated amino acid binding (TAIR:AT5G16050.1); Has 2097 Blast hits to 2088 proteins in 293 species: Archae - 0; Bacteria - 0; Metazoa - 1027; Fungi - 222; Plants - 542; Viruses - 0; Other Eukaryotes - 306 (source: NCBI BLink).  protein_id AT5G38480.1p  transcript_id AT5G38480.1  protein_id AT5G38480.1p  transcript_id AT5G38480.1  
At5g38480	chr5:015410277	0.0	W/15410277-15410750,15410829-15410951,15411039-15411159,15411239-15411285	AT5G38480.2  CDS  gene_syn GENERAL REGULATORY FACTOR 3, GF14PSI ISOFORM, GRF3, MXI10.21, MXI10_21, RCI1  gene GRF3  function general regulatory factor, a 14-3-3 gene  go_component cell wall|GO:0005618|16287169|IDA  go_component mitochondrion|GO:0005739|17137349|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_function ATP binding|GO:0005524|17137349|IDA  go_function protein binding|GO:0005515||NAS  go_function protein phosphorylated amino acid binding|GO:0045309|10631267|TAS  product GRF3 (GENERAL REGULATORY FACTOR 3); ATP binding / protein binding / protein phosphorylated amino acid binding  note GENERAL REGULATORY FACTOR 3 (GRF3); FUNCTIONS IN: protein phosphorylated amino acid binding, protein binding, ATP binding; LOCATED IN: mitochondrion, cell wall, chloroplast, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: GRF7 (GENERAL REGULATORY FACTOR 7); protein binding / protein phosphorylated amino acid binding (TAIR:AT3G02520.1); Has 2099 Blast hits to 2090 proteins in 294 species: Archae - 0; Bacteria - 2; Metazoa - 1027; Fungi - 222; Plants - 542; Viruses - 0; Other Eukaryotes - 306 (source: NCBI BLink).  protein_id AT5G38480.2p  transcript_id AT5G38480.2  protein_id AT5G38480.2p  transcript_id AT5G38480.2  
At5g38490	chr5:015411868	0.0	C/15411868-15412962	AT5G38490.1  CDS  gene_syn MBB18.2, MBB18_2  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508), Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT5G38500.1); Has 56 Blast hits to 55 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G38490.1p  transcript_id AT5G38490.1  protein_id AT5G38490.1p  transcript_id AT5G38490.1  
At5g38500	chr5:015416018	0.0	C/15416018-15417253	AT5G38500.1  CDS  gene_syn MBB18.3, MBB18_3  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508), Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT5G38490.1); Has 345 Blast hits to 287 proteins in 54 species: Archae - 0; Bacteria - 9; Metazoa - 60; Fungi - 18; Plants - 54; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink).  protein_id AT5G38500.1p  transcript_id AT5G38500.1  protein_id AT5G38500.1p  transcript_id AT5G38500.1  
At5g38510	chr5:015419615	0.0	C/15419615-15420002,15419366-15419531,15419100-15419265,15418689-15418859,15418444-15418598,15417839-15418097	AT5G38510.1  CDS  gene_syn MBB18.4, MBB18_4  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product rhomboid family protein  note rhomboid family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: ATRBL6 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 6) (TAIR:AT1G12750.2); Has 2198 Blast hits to 2198 proteins in 653 species: Archae - 38; Bacteria - 1139; Metazoa - 199; Fungi - 70; Plants - 156; Viruses - 0; Other Eukaryotes - 596 (source: NCBI BLink).  protein_id AT5G38510.1p  transcript_id AT5G38510.1  protein_id AT5G38510.1p  transcript_id AT5G38510.1  
At5g38510	chr5:015419615	0.0	C/15419615-15420002,15419366-15419531,15419100-15419265,15418689-15418859,15418444-15418598,15417839-15418097	AT5G38510.2  CDS  gene_syn MBB18.4, MBB18_4  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product rhomboid family protein  note rhomboid family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: ATRBL6 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 6) (TAIR:AT1G12750.2); Has 2198 Blast hits to 2198 proteins in 653 species: Archae - 38; Bacteria - 1139; Metazoa - 199; Fungi - 70; Plants - 156; Viruses - 0; Other Eukaryotes - 596 (source: NCBI BLink).  protein_id AT5G38510.2p  transcript_id AT5G38510.2  protein_id AT5G38510.2p  transcript_id AT5G38510.2  
At5g38520	chr5:015421605	0.0	W/15421605-15421927,15422084-15422195,15422287-15422380,15422477-15422690,15422773-15422842,15422923-15423234	AT5G38520.2  CDS  gene_syn MBB18.5, MBB18_5  go_component chloroplast|GO:0009507|18431481|IDA  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT5G19850.1); Has 5891 Blast hits to 5891 proteins in 807 species: Archae - 53; Bacteria - 3531; Metazoa - 476; Fungi - 76; Plants - 333; Viruses - 4; Other Eukaryotes - 1418 (source: NCBI BLink).  protein_id AT5G38520.2p  transcript_id AT5G38520.2  protein_id AT5G38520.2p  transcript_id AT5G38520.2  
At5g38520	chr5:015421605	0.0	W/15421605-15421927,15422084-15422195,15422287-15422380,15422513-15422690,15422773-15422842,15422923-15423234	AT5G38520.1  CDS  gene_syn MBB18.5, MBB18_5  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT5G19850.1); Has 7256 Blast hits to 7256 proteins in 913 species: Archae - 64; Bacteria - 4422; Metazoa - 497; Fungi - 107; Plants - 388; Viruses - 4; Other Eukaryotes - 1774 (source: NCBI BLink).  protein_id AT5G38520.1p  transcript_id AT5G38520.1  protein_id AT5G38520.1p  transcript_id AT5G38520.1  
At5g38530	chr5:015424097	0.0	W/15424097-15424166,15424276-15424618,15424835-15425051,15425151-15425688,15425852-15425950,15426041-15426294	AT5G38530.1  CDS  gene_syn MBB18.6, MBB18_6  go_process tryptophan biosynthetic process|GO:0000162||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function tryptophan synthase activity|GO:0004834||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_process tryptophan biosynthetic process|GO:0000162||ISS  go_function tryptophan synthase activity|GO:0004834||ISS  product tryptophan synthase-related  note tryptophan synthase-related; FUNCTIONS IN: pyridoxal phosphate binding, tryptophan synthase activity, catalytic activity; INVOLVED IN: tryptophan biosynthetic process, metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Tryptophan synthase, beta chain-like (InterPro:IPR006316); BEST Arabidopsis thaliana protein match is: TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2); tryptophan synthase (TAIR:AT4G27070.1); Has 7407 Blast hits to 7407 proteins in 1444 species: Archae - 233; Bacteria - 3745; Metazoa - 7; Fungi - 149; Plants - 67; Viruses - 0; Other Eukaryotes - 3206 (source: NCBI BLink).  protein_id AT5G38530.1p  transcript_id AT5G38530.1  protein_id AT5G38530.1p  transcript_id AT5G38530.1  
At5g38540	chr5:015428219	0.0	C/15428219-15428710,15427704-15428129,15427284-15427604,15426810-15427058	AT5G38540.1  CDS  gene_syn MBB18.7, MBB18_7  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product jacalin lectin family protein  note jacalin lectin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin lectin family protein (TAIR:AT5G38550.1); Has 970 Blast hits to 395 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 970; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G38540.1p  transcript_id AT5G38540.1  protein_id AT5G38540.1p  transcript_id AT5G38540.1  
At5g38550	chr5:015435212	0.0	C/15435212-15435421,15434378-15434815,15433870-15434292,15433310-15433777,15432965-15433210	AT5G38550.1  CDS  gene_syn MBB18.8, MBB18_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product jacalin lectin family protein  note jacalin lectin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin lectin family protein (TAIR:AT5G38540.1); Has 1187 Blast hits to 417 proteins in 26 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1185; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G38550.1p  transcript_id AT5G38550.1  protein_id AT5G38550.1p  transcript_id AT5G38550.1  
At5g38560	chr5:015439844	0.0	W/15439844-15440705,15441382-15441795,15441875-15441961,15442056-15442126,15442210-15442292,15442388-15442535,15442627-15443007	AT5G38560.1  CDS  gene_syn MBB18.10, MBB18_10  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function structural constituent of cell wall|GO:0005199||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: structural constituent of cell wall, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Pistil-specific extensin-like protein (InterPro:IPR003882), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATP binding / protein kinase/ protein serine/threonine kinase (TAIR:AT1G68690.1); Has 405816 Blast hits to 189864 proteins in 4487 species: Archae - 1066; Bacteria - 69258; Metazoa - 168923; Fungi - 53404; Plants - 46895; Viruses - 9870; Other Eukaryotes - 56400 (source: NCBI BLink).  protein_id AT5G38560.1p  transcript_id AT5G38560.1  protein_id AT5G38560.1p  transcript_id AT5G38560.1  
At5g38565	chr5:015445758	0.0	C/15445758-15446009,15445576-15445666,15445161-15445499,15444936-15445009,15444571-15444864	AT5G38565.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G38570.1); Has 991 Blast hits to 931 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 991; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G38565.1p  transcript_id AT5G38565.1  protein_id AT5G38565.1p  transcript_id AT5G38565.1  
At5g38570	chr5:015449879	0.0	C/15449879-15450601,15449648-15449791,15449279-15449551	AT5G38570.1  CDS  gene_syn MBB18.12, MBB18_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G38590.2); Has 1174 Blast hits to 1143 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1174; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G38570.1p  transcript_id AT5G38570.1  protein_id AT5G38570.1p  transcript_id AT5G38570.1  
At5g38580	chr5:015451771	0.0	C/15451771-15451842,15451541-15451681,15451164-15451457	AT5G38580.1  CDS  gene_syn MBB18.13, MBB18_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G38570.1); Has 225 Blast hits to 219 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 225; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G38580.1p  transcript_id AT5G38580.1  protein_id AT5G38580.1p  transcript_id AT5G38580.1  
At5g38590	chr5:015452586	0.0	C/15452586-15453455	AT5G38590.1  CDS  gene_syn MBB18.14, MBB18_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G10400.2); Has 1342 Blast hits to 1310 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1337; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G38590.1p  transcript_id AT5G38590.1  protein_id AT5G38590.1p  transcript_id AT5G38590.1  
At5g38590	chr5:015452628	0.0	C/15452628-15453455,15452411-15452551,15452066-15452329	AT5G38590.2  CDS  gene_syn MBB18.14, MBB18_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G38570.1); Has 1374 Blast hits to 1339 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 1369; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G38590.2p  transcript_id AT5G38590.2  protein_id AT5G38590.2p  transcript_id AT5G38590.2  
At5g38595	chr5:015454386	0.0	W/15454386-15454905	AT5G38595.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G17277.1); contains domain Multidrug resistance ABC transporter MsbA, N-terminal domain (SSF90123)  
At5g38600	chr5:015457386	0.0	W/15457386-15457701,15458117-15458198,15458329-15458404,15458880-15458960,15459056-15459192,15459344-15459602,15459692-15459755,15459883-15460466	AT5G38600.1  CDS  gene_syn MBB18.15, MBB18_15  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein  note proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: PSP, proline-rich (InterPro:IPR006568), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (TAIR:AT1G67210.2); Has 6719 Blast hits to 3168 proteins in 192 species: Archae - 2; Bacteria - 119; Metazoa - 3566; Fungi - 1133; Plants - 541; Viruses - 3; Other Eukaryotes - 1355 (source: NCBI BLink).  protein_id AT5G38600.1p  transcript_id AT5G38600.1  protein_id AT5G38600.1p  transcript_id AT5G38600.1  
At5g38610	chr5:015460845	0.0	C/15460845-15461444	AT5G38610.1  CDS  gene_syn MBB18.16, MBB18_16  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT5G46940.1); Has 131 Blast hits to 131 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G38610.1p  transcript_id AT5G38610.1  protein_id AT5G38610.1p  transcript_id AT5G38610.1  
At5g38620	chr5:015463858	0.0	C/15463858-15464907	AT5G38620.1  CDS  gene_syn MBB18.17, MBB18_17  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product MADS-box protein (AGL73)  note MADS-box protein (AGL73); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: MADS-box protein (AGL84) (TAIR:AT5G49420.1); Has 413 Blast hits to 413 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 2; Plants - 384; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G38620.1p  transcript_id AT5G38620.1  protein_id AT5G38620.1p  transcript_id AT5G38620.1  
At5g38630	chr5:015466141	0.0	W/15466141-15466287,15466514-15466562,15466919-15467118,15467215-15467511	AT5G38630.1  CDS  gene_syn ACYB-1, MBB18.18, MBB18_18  gene ACYB-1  function Encodes for cytochrome b561.  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_component integral to membrane|GO:0016021||ISS  go_function carbon-monoxide oxygenase activity|GO:0008805||ISS  product ACYB-1; carbon-monoxide oxygenase  note ACYB-1; FUNCTIONS IN: carbon-monoxide oxygenase activity; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b561, eukaryote (InterPro:IPR004877), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593); BEST Arabidopsis thaliana protein match is: ACYB-2; carbon-monoxide oxygenase (TAIR:AT4G25570.1); Has 431 Blast hits to 430 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 306; Fungi - 8; Plants - 106; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT5G38630.1p  transcript_id AT5G38630.1  protein_id AT5G38630.1p  transcript_id AT5G38630.1  
At5g38640	chr5:015470188	0.0	C/15470188-15470674,15469965-15470084,15469451-15469812,15468543-15469287,15468353-15468449,15468206-15468260,15468020-15468082	AT5G38640.1  CDS  gene_syn MBB18.19, MBB18_19  go_process cellular metabolic process|GO:0044237||IEA  go_component eukaryotic translation initiation factor 2B complex|GO:0005851||ISS  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  go_function GTP binding|GO:0005525||ISS  product eukaryotic translation initiation factor 2B family protein / eIF-2B family protein  note eukaryotic translation initiation factor 2B family protein / eIF-2B family protein; FUNCTIONS IN: GTP binding, translation initiation factor activity; INVOLVED IN: translational initiation, cellular metabolic process; LOCATED IN: eukaryotic translation initiation factor 2B complex; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Initiation factor 2B related (InterPro:IPR000649); BEST Arabidopsis thaliana protein match is: GTP binding / translation initiation factor (TAIR:AT2G44070.1); Has 8292 Blast hits to 4264 proteins in 717 species: Archae - 217; Bacteria - 1298; Metazoa - 1264; Fungi - 721; Plants - 151; Viruses - 60; Other Eukaryotes - 4581 (source: NCBI BLink).  protein_id AT5G38640.1p  transcript_id AT5G38640.1  protein_id AT5G38640.1p  transcript_id AT5G38640.1  
At5g38650	chr5:015472574	0.0	C/15472574-15472699,15472274-15472374,15471758-15471855,15471208-15471308	AT5G38650.1  CDS  gene_syn MBB18.20, MBB18_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product proteasome maturation factor UMP1 family protein  note proteasome maturation factor UMP1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome maturation factor UMP1 (InterPro:IPR008012); BEST Arabidopsis thaliana protein match is: proteasome maturation factor UMP1 family protein (TAIR:AT1G67250.1); Has 161 Blast hits to 161 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT5G38650.1p  transcript_id AT5G38650.1  protein_id AT5G38650.1p  transcript_id AT5G38650.1  
At5g38660	chr5:015475219	0.0	C/15475219-15475497,15474895-15474941,15474721-15474823,15474448-15474534,15474038-15474121,15473873-15473926,15473642-15473722,15473452-15473497,15473285-15473364	AT5G38660.1  CDS  gene_syn ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT, APE1, MBB18.21, MBB18_21  gene APE1  function mutant has Altered acclimation responses;  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT)  note ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT (APE1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 219 Blast hits to 219 proteins in 64 species: Archae - 0; Bacteria - 101; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).  protein_id AT5G38660.1p  transcript_id AT5G38660.1  protein_id AT5G38660.1p  transcript_id AT5G38660.1  
At5g38670	chr5:015475786	0.0	W/15475786-15475971,15476182-15476871	AT5G38670.1  CDS  gene_syn MBB18.22, MBB18_22  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49000.1); Has 547 Blast hits to 444 proteins in 17 species: Archae - 0; Bacteria - 3; Metazoa - 23; Fungi - 0; Plants - 521; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G38670.1p  transcript_id AT5G38670.1  protein_id AT5G38670.1p  transcript_id AT5G38670.1  
At5g38680	chr5:015477324	0.0	W/15477324-15478220,15478864-15479040	AT5G38680.1  CDS  gene_syn MBB18.23, MBB18_23  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT5G51250.1); Has 948 Blast hits to 914 proteins in 81 species: Archae - 0; Bacteria - 47; Metazoa - 306; Fungi - 6; Plants - 563; Viruses - 7; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT5G38680.1p  transcript_id AT5G38680.1  protein_id AT5G38680.1p  transcript_id AT5G38680.1  
At5g38690	chr5:015482891	0.0	C/15482891-15482992,15482262-15482359,15482084-15482170,15481889-15482018,15481554-15481794,15481261-15481466,15481021-15481163,15480734-15480925,15480562-15480652,15480316-15480484,15480121-15480234,15479944-15480040,15479424-15479472	AT5G38690.1  CDS  gene_syn MBB18.24, MBB18_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DDT superfamily (InterPro:IPR018501), DDT subgroup (InterPro:IPR018500), Cell division cycle-associated protein (InterPro:IPR018866); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67780.1); Has 492 Blast hits to 468 proteins in 97 species: Archae - 9; Bacteria - 41; Metazoa - 179; Fungi - 19; Plants - 99; Viruses - 2; Other Eukaryotes - 143 (source: NCBI BLink).  protein_id AT5G38690.1p  transcript_id AT5G38690.1  protein_id AT5G38690.1p  transcript_id AT5G38690.1  
At5g38700	chr5:015489690	0.0	W/15489690-15490238	AT5G38700.1  CDS  gene_syn MBB18.26, MBB18_26  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.12 twelve leaves visible, LP.08 eight leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02170.1); Has 41 Blast hits to 41 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G38700.1p  transcript_id AT5G38700.1  protein_id AT5G38700.1p  transcript_id AT5G38700.1  
At5g38705	chr5:015492042	0.0	C/15492042-15497246	AT5G38705.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 4.4e-305 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At5g38710	chr5:015501340	0.0	W/15501340-15501843,15502717-15503368,15503452-15503692,15503866-15503899	AT5G38710.1  CDS  gene_syn MKD10.10, MKD10_10  go_process glutamate biosynthetic process|GO:0006537||IEA  go_process proline catabolic process|GO:0006562||IEA  go_function proline dehydrogenase activity|GO:0004657||IEA  go_process glutamate biosynthetic process|GO:0006537||ISS  go_process proline catabolic process|GO:0006562||ISS  go_function proline dehydrogenase activity|GO:0004657||ISS  product proline oxidase, putative / osmotic stress-responsive proline dehydrogenase, putative  note proline oxidase, putative / osmotic stress-responsive proline dehydrogenase, putative; FUNCTIONS IN: proline dehydrogenase activity; INVOLVED IN: proline catabolic process, glutamate biosynthetic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Proline dehydrogenase (InterPro:IPR002872), Proline oxidase (InterPro:IPR015659); BEST Arabidopsis thaliana protein match is: ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5); proline dehydrogenase (TAIR:AT3G30775.1); Has 1875 Blast hits to 1871 proteins in 708 species: Archae - 1; Bacteria - 1106; Metazoa - 166; Fungi - 124; Plants - 52; Viruses - 2; Other Eukaryotes - 424 (source: NCBI BLink).  protein_id AT5G38710.1p  transcript_id AT5G38710.1  protein_id AT5G38710.1p  transcript_id AT5G38710.1  
At5g38720	chr5:015510430	0.0	C/15510430-15510472,15510075-15510167,15509830-15509976,15509631-15509741,15509193-15509321,15508970-15509067,15508663-15508876,15508417-15508502	AT5G38720.1  CDS  gene_syn MKD10.4, MKD10_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 12865 Blast hits to 8309 proteins in 513 species: Archae - 36; Bacteria - 732; Metazoa - 5093; Fungi - 947; Plants - 377; Viruses - 41; Other Eukaryotes - 5639 (source: NCBI BLink).  protein_id AT5G38720.1p  transcript_id AT5G38720.1  protein_id AT5G38720.1p  transcript_id AT5G38720.1  
At5g38730	chr5:015510901	0.0	W/15510901-15512691	AT5G38730.1  CDS  gene_syn MKD10.5, MKD10_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G11690.1); Has 21674 Blast hits to 5983 proteins in 178 species: Archae - 4; Bacteria - 12; Metazoa - 558; Fungi - 466; Plants - 19662; Viruses - 0; Other Eukaryotes - 972 (source: NCBI BLink).  protein_id AT5G38730.1p  transcript_id AT5G38730.1  protein_id AT5G38730.1p  transcript_id AT5G38730.1  
At5g38740	chr5:015513025	0.0	C/15513025-15514305	AT5G38740.1  CDS  gene_syn AGAMOUS-LIKE 77, AGL77, MKD10.6, MKD10_6  gene AGL77  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL77 (AGAMOUS-LIKE 77); transcription factor  note AGAMOUS-LIKE 77 (AGL77); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL81 (AGAMOUS-LIKE 81); transcription factor (TAIR:AT5G39750.1); Has 763 Blast hits to 712 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 3; Plants - 362; Viruses - 0; Other Eukaryotes - 363 (source: NCBI BLink).  protein_id AT5G38740.1p  transcript_id AT5G38740.1  protein_id AT5G38740.1p  transcript_id AT5G38740.1  
At5g38750	chr5:015522650	0.0	W/15522650-15522747,15522789-15522858,15522941-15523180	AT5G38750.1  CDS  gene_syn MKD10.8, MKD10_8  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity|GO:0050566||ISS  product asparaginyl-tRNA synthetase family  note asparaginyl-tRNA synthetase family; FUNCTIONS IN: asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity; INVOLVED IN: N-terminal protein myristoylation, tRNA aminoacylation for protein translation; EXPRESSED IN: sperm cell; BEST Arabidopsis thaliana protein match is: SYNC1; ATP binding / aminoacyl-tRNA ligase/ asparagine-tRNA ligase/ aspartate-tRNA ligase/ nucleic acid binding / nucleotide binding (TAIR:AT5G56680.1); Has 261 Blast hits to 261 proteins in 95 species: Archae - 0; Bacteria - 139; Metazoa - 31; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT5G38750.1p  transcript_id AT5G38750.1  protein_id AT5G38750.1p  transcript_id AT5G38750.1  
At5g38760	chr5:015524249	0.0	W/15524249-15524308,15524503-15524571,15524669-15524743	AT5G38760.1  CDS  gene_syn MKD10.60, MKD10_60  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G53820.1); Has 100 Blast hits to 92 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G38760.1p  transcript_id AT5G38760.1  protein_id AT5G38760.1p  transcript_id AT5G38760.1  
At5g38770	chr5:015526114	0.0	W/15526114-15526407	AT5G38770.1  CDS  gene_syn Arabidopsis thaliana GLUTAMINE DUMPER 7, AtGDU7, MKD10.70, MKD10_70  gene AtGDU7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product AtGDU7 (Arabidopsis thaliana GLUTAMINE DUMPER 7)  note Arabidopsis thaliana GLUTAMINE DUMPER 7 (AtGDU7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; Has 8 Blast hits to 8 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G38770.1p  transcript_id AT5G38770.1  protein_id AT5G38770.1p  transcript_id AT5G38770.1  
At5g38780	chr5:015530085	0.0	W/15530085-15530162,15530311-15530985,15531131-15531463	AT5G38780.1  CDS  gene_syn MKD10.80, MKD10_80  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757||ISS  product S-adenosyl-L-methionine:carboxyl methyltransferase family protein  note S-adenosyl-L-methionine:carboxyl methyltransferase family protein; FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: methyltransferase-related (TAIR:AT5G38100.1); Has 605 Blast hits to 597 proteins in 94 species: Archae - 0; Bacteria - 40; Metazoa - 12; Fungi - 3; Plants - 443; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT5G38780.1p  transcript_id AT5G38780.1  protein_id AT5G38780.1p  transcript_id AT5G38780.1  
At5g38790	chr5:015533785	0.0	W/15533785-15534180	AT5G38790.1  CDS  gene_syn MKD10.11, MKD10_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 113 Blast hits to 111 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 6; Plants - 34; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT5G38790.1p  transcript_id AT5G38790.1  protein_id AT5G38790.1p  transcript_id AT5G38790.1  
At5g38800	chr5:015538305	0.0	C/15538305-15538802	AT5G38800.1  CDS  gene_syn Arabidopsis thaliana basic leucine-zipper 43, AtbZIP43, K15E6.1  gene AtbZIP43  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  product AtbZIP43 (Arabidopsis thaliana basic leucine-zipper 43); DNA binding / transcription factor  note Arabidopsis thaliana basic leucine-zipper 43 (AtbZIP43); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: ATBZIP42 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 42); DNA binding / protein heterodimerization/ protein homodimerization/ transcription factor (TAIR:AT3G30530.1); Has 964 Blast hits to 958 proteins in 97 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 7; Plants - 808; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT5G38800.1p  transcript_id AT5G38800.1  protein_id AT5G38800.1p  transcript_id AT5G38800.1  
At5g38810	chr5:015541222	0.0	C/15541222-15541540,15540663-15541003,15540484-15540603	AT5G38810.1  CDS  gene_syn K15E6.2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G31080.1); Has 506 Blast hits to 350 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 506; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G38810.1p  transcript_id AT5G38810.1  protein_id AT5G38810.1p  transcript_id AT5G38810.1  
At5g38820	chr5:015543481	0.0	W/15543481-15543880,15543969-15544121,15544196-15544399,15544477-15544948,15545041-15545182	AT5G38820.1  CDS  gene_syn K15E6.7  function Encodes a putative amino acid transporter.  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_function amine transmembrane transporter activity|GO:0005275||ISS  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product amino acid transporter family protein  note amino acid transporter family protein; FUNCTIONS IN: amino acid transmembrane transporter activity, amine transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid transporter family protein (TAIR:AT3G30390.2); Has 3115 Blast hits to 3058 proteins in 254 species: Archae - 9; Bacteria - 174; Metazoa - 1271; Fungi - 516; Plants - 462; Viruses - 5; Other Eukaryotes - 678 (source: NCBI BLink).  protein_id AT5G38820.1p  transcript_id AT5G38820.1  protein_id AT5G38820.1p  transcript_id AT5G38820.1  
At5g38830	chr5:015547922	0.0	C/15547922-15548094,15547708-15547771,15547435-15547596,15547173-15547343,15546803-15547084,15546564-15546689,15546192-15546410,15545764-15546102	AT5G38830.1  CDS  gene_syn K15E6.3, K15E6_3  go_component cytoplasm|GO:0005737||IEA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function nucleotide binding|GO:0000166||IEA  go_function cysteine-tRNA ligase activity|GO:0004817||IEA  go_function ATP binding|GO:0005524||IEA  go_process cysteinyl-tRNA aminoacylation|GO:0006423||ISS  go_function cysteine-tRNA ligase activity|GO:0004817||ISS  go_function ATP binding|GO:0005524||ISS  product tRNA synthetase class I (C) family protein  note tRNA synthetase class I (C) family protein; FUNCTIONS IN: cysteine-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion, cysteinyl-tRNA aminoacylation; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cysteinyl-tRNA synthetase, class Ia (InterPro:IPR002308), Cysteinyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR015803), Cysteinyl-tRNA synthetase, class Ia, C-terminal (InterPro:IPR015804); BEST Arabidopsis thaliana protein match is: tRNA synthetase class I (C) family protein (TAIR:AT3G56300.1); Has 8148 Blast hits to 7899 proteins in 1622 species: Archae - 141; Bacteria - 3284; Metazoa - 371; Fungi - 182; Plants - 67; Viruses - 3; Other Eukaryotes - 4100 (source: NCBI BLink).  protein_id AT5G38830.1p  transcript_id AT5G38830.1  protein_id AT5G38830.1p  transcript_id AT5G38830.1  
At5g38840	chr5:015551329	0.0	W/15551329-15551684,15551785-15551870,15551959-15552038,15552136-15552191,15552282-15552330,15552444-15552590,15552704-15552799,15553028-15553141,15553244-15553377,15553553-15553803,15553919-15554707,15554797-15554846	AT5G38840.1  CDS  gene_syn K15E6.5, K15E6_5  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product forkhead-associated domain-containing protein / FHA domain-containing protein  note forkhead-associated domain-containing protein / FHA domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: forkhead-associated domain-containing protein / FHA domain-containing protein (TAIR:AT5G47790.1); Has 15395 Blast hits to 11207 proteins in 775 species: Archae - 91; Bacteria - 1626; Metazoa - 6696; Fungi - 1107; Plants - 445; Viruses - 54; Other Eukaryotes - 5376 (source: NCBI BLink).  protein_id AT5G38840.1p  transcript_id AT5G38840.1  protein_id AT5G38840.1p  transcript_id AT5G38840.1  
At5g38850	chr5:015555187	0.0	W/15555187-15555632,15555729-15556818,15556915-15557211,15557303-15558430	AT5G38850.1  CDS  gene_syn K15E6.30, K15E6_30  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT2G16870.1); Has 16033 Blast hits to 11923 proteins in 513 species: Archae - 22; Bacteria - 1036; Metazoa - 2172; Fungi - 91; Plants - 12136; Viruses - 0; Other Eukaryotes - 576 (source: NCBI BLink).  protein_id AT5G38850.1p  transcript_id AT5G38850.1  protein_id AT5G38850.1p  transcript_id AT5G38850.1  
At5g38860	chr5:015559083	0.0	W/15559083-15559237,15559336-15559411,15559491-15559586,15559731-15560068,15560557-15560686,15560810-15560911	AT5G38860.1  CDS  gene_syn BES1-interacting Myc-like protein 3, BIM3, K15E6.40, K15E6_40  gene BIM3  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product BIM3 (BES1-interacting Myc-like protein 3); DNA binding / transcription factor  note BES1-interacting Myc-like protein 3 (BIM3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BIM2 (BES1-interacting Myc-like protein 2); DNA binding / transcription factor (TAIR:AT1G69010.1); Has 805 Blast hits to 803 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 120; Fungi - 24; Plants - 651; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G38860.1p  transcript_id AT5G38860.1  protein_id AT5G38860.1p  transcript_id AT5G38860.1  
At5g38870	chr5:015561465	0.0	W/15561465-15562122	AT5G38870.1  mRNA_TE_gene  pseudo  gene_syn K15E6.8, K15E6_8  note Transposable element gene, pseudogene, hypothetical protein  
At5g38880	chr5:015568287	0.0	C/15568287-15568804,15567163-15567702,15566706-15566847,15566336-15566506,15565903-15566112,15565628-15565813,15565103-15565262,15564485-15564680,15564244-15564376,15563621-15563755	AT5G38880.1  CDS  gene_syn K15E6.9, K15E6_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 379 Blast hits to 327 proteins in 103 species: Archae - 4; Bacteria - 53; Metazoa - 188; Fungi - 37; Plants - 26; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT5G38880.1p  transcript_id AT5G38880.1  protein_id AT5G38880.1p  transcript_id AT5G38880.1  
At5g38890	chr5:015569507	0.0	W/15569507-15569659,15569796-15569870,15569968-15570056,15570141-15570225,15570456-15570537,15570807-15570898	AT5G38890.1  CDS  gene_syn K15E6.10  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product exoribonuclease-related  note exoribonuclease-related; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: S1, RNA binding (InterPro:IPR003029); Has 375 Blast hits to 375 proteins in 161 species: Archae - 53; Bacteria - 0; Metazoa - 114; Fungi - 137; Plants - 18; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT5G38890.1p  transcript_id AT5G38890.1  protein_id AT5G38890.1p  transcript_id AT5G38890.1  
At5g38895	chr5:015572084	0.0	W/15572084-15572203,15572284-15572686,15572945-15573054,15573283-15573315	AT5G38895.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process response to chitin|GO:0010200|17722694|IEP  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G02290.1); Has 4172 Blast hits to 4170 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 1835; Fungi - 219; Plants - 1403; Viruses - 4; Other Eukaryotes - 711 (source: NCBI BLink).  protein_id AT5G38895.1p  transcript_id AT5G38895.1  protein_id AT5G38895.1p  transcript_id AT5G38895.1  
At5g38900	chr5:015574802	0.0	C/15574802-15574945,15574601-15574720,15574471-15574514,15574262-15574387,15574079-15574163,15573938-15573994,15573745-15573822	AT5G38900.1  CDS  gene_syn K15E6.80, K15E6_80  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product DSBA oxidoreductase family protein  note DSBA oxidoreductase family protein; FUNCTIONS IN: protein disulfide oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DSBA oxidoreductase (InterPro:IPR001853), Thioredoxin-like fold (InterPro:IPR012336); Has 1327 Blast hits to 1327 proteins in 401 species: Archae - 7; Bacteria - 793; Metazoa - 9; Fungi - 78; Plants - 27; Viruses - 0; Other Eukaryotes - 413 (source: NCBI BLink).  protein_id AT5G38900.1p  transcript_id AT5G38900.1  protein_id AT5G38900.1p  transcript_id AT5G38900.1  
At5g38905	chr5:015575857	0.0	W/15575857-15575930	AT5G38905.1  tRNA  gene_syn 67741.TRNA-ILE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ile (anticodon: AAT)  transcript_id AT5G38905.1  
At5g38910	chr5:015578811	0.0	W/15578811-15578934,15579040-15579584	AT5G38910.1  CDS  gene_syn K15E6.90, K15E6_90  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process biological_process|GO:0008150||ND  product germin-like protein, putative  note germin-like protein, putative; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: manganese ion binding / nutrient reservoir (TAIR:AT5G38940.1); Has 856 Blast hits to 853 proteins in 77 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 27; Plants - 820; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G38910.1p  transcript_id AT5G38910.1  protein_id AT5G38910.1p  transcript_id AT5G38910.1  
At5g38920	chr5:015582302	0.0	C/15582302-15582439,15581719-15582159	AT5G38920.1  CDS  gene_syn K15E6.15, K15E6_15  go_function nucleic acid binding|GO:0003676||IEA  go_function ribonuclease H activity|GO:0004523||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding / ribonuclease H  note nucleic acid binding / ribonuclease H; FUNCTIONS IN: ribonuclease H activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Ribonuclease H (InterPro:IPR002156); BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT2G34320.1); Has 54 Blast hits to 54 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G38920.1p  transcript_id AT5G38920.1  protein_id AT5G38920.1p  transcript_id AT5G38920.1  
At5g38930	chr5:015585073	0.0	W/15585073-15585202,15585300-15585841	AT5G38930.1  CDS  gene_syn K15E6.110, K15E6_110  go_component cell wall|GO:0005618|15593128|IDA  go_function manganese ion binding|GO:0030145||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process biological_process|GO:0008150||ND  product germin-like protein, putative  note germin-like protein, putative; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: manganese ion binding / nutrient reservoir (TAIR:AT5G38940.1); Has 859 Blast hits to 857 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 31; Plants - 815; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT5G38930.1p  transcript_id AT5G38930.1  protein_id AT5G38930.1p  transcript_id AT5G38930.1  
At5g38940	chr5:015588771	0.0	W/15588771-15588900,15588985-15589526	AT5G38940.1  CDS  gene_syn K15E6.120, K15E6_120  go_component cell wall|GO:0005618|15593128|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function manganese ion binding|GO:0030145||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  product manganese ion binding / nutrient reservoir  note manganese ion binding / nutrient reservoir; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: response to salt stress; LOCATED IN: cell wall; EXPRESSED IN: fruit, root; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: germin-like protein, putative (TAIR:AT5G38930.1); Has 865 Blast hits to 863 proteins in 83 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 31; Plants - 819; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT5G38940.1p  transcript_id AT5G38940.1  protein_id AT5G38940.1p  transcript_id AT5G38940.1  
At5g38950	chr5:015590693	0.0	W/15590693-15590938,15590982-15591050	AT5G38950.1  CDS  gene_syn K15E6.19, K15E6_19  go_function nutrient reservoir activity|GO:0045735||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product germin-like protein-related  note germin-like protein-related; FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: manganese ion binding / nutrient reservoir (TAIR:AT5G38940.1); Has 783 Blast hits to 783 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 783; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G38950.1p  transcript_id AT5G38950.1  protein_id AT5G38950.1p  transcript_id AT5G38950.1  
At5g38960	chr5:015592992	0.0	W/15592992-15593115,15593242-15593783	AT5G38960.1  CDS  gene_syn K15E6.140, K15E6_140  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process biological_process|GO:0008150||ND  product germin-like protein, putative  note germin-like protein, putative; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: leaf whorl, leaf; EXPRESSED DURING: LP.06 six leaves visible; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), Germin (InterPro:IPR001929), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: manganese ion binding / nutrient reservoir (TAIR:AT5G38940.1); Has 854 Blast hits to 853 proteins in 80 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 27; Plants - 816; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G38960.1p  transcript_id AT5G38960.1  protein_id AT5G38960.1p  transcript_id AT5G38960.1  
At5g38970	chr5:015597193	0.0	C/15597193-15597465,15596685-15596834,15596358-15596603,15596176-15596262,15596003-15596081,15595611-15595717,15595136-15595260,15594935-15595022	AT5G38970.2  CDS  gene_syn ATBR6OX, BR6OX, BR6OX1, BRASSINOSTEROID-6-OXIDASE, BRASSINOSTEROID-6-OXIDASE 1, CYP85A1, K15E6.150, K15E6_150  gene BR6OX1  function Encodes a polypeptide involved in the C-6 oxidation of brassinosteroids. Heterologous expression of the protein in yeast conferred the ability to catalyze multiple reactions in which the C-6 position of 6-deoxocastasterone, 6-deoxotyphasterol, 3-dehydro-6-deoxoteasterone and 6-deoxoteasterone are oxidized.  go_process brassinosteroid homeostasis|GO:0010268|15908602|IEP  go_process brassinosteroid biosynthetic process|GO:0016132|11402205|IDA  go_process brassinosteroid biosynthetic process|GO:0016132|12226529|TAS  go_function monooxygenase activity|GO:0004497|15710611|IDA  go_function oxygen binding|GO:0019825||ISS  product BR6OX1 (BRASSINOSTEROID-6-OXIDASE 1); monooxygenase/ oxygen binding  note BRASSINOSTEROID-6-OXIDASE 1 (BR6OX1); FUNCTIONS IN: monooxygenase activity, oxygen binding; INVOLVED IN: brassinosteroid homeostasis, brassinosteroid biosynthetic process; EXPRESSED IN: fruit; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: BR6OX2 (BRASSINOSTEROID-6-OXIDASE 2); monooxygenase/ oxygen binding (TAIR:AT3G30180.1); Has 20452 Blast hits to 20418 proteins in 1183 species: Archae - 21; Bacteria - 2697; Metazoa - 9068; Fungi - 3212; Plants - 4435; Viruses - 3; Other Eukaryotes - 1016 (source: NCBI BLink).  protein_id AT5G38970.2p  transcript_id AT5G38970.2  protein_id AT5G38970.2p  transcript_id AT5G38970.2  
At5g38970	chr5:015597584	0.0	C/15597584-15597774,15597193-15597517,15596685-15596834,15596358-15596603,15596176-15596262,15596003-15596081,15595604-15595717,15595185-15595252	AT5G38970.3  CDS  gene_syn ATBR6OX, BR6OX, BR6OX1, BRASSINOSTEROID-6-OXIDASE, BRASSINOSTEROID-6-OXIDASE 1, CYP85A1, K15E6.150, K15E6_150  gene BR6OX1  function Encodes a polypeptide involved in the C-6 oxidation of brassinosteroids. Heterologous expression of the protein in yeast conferred the ability to catalyze multiple reactions in which the C-6 position of 6-deoxocastasterone, 6-deoxotyphasterol, 3-dehydro-6-deoxoteasterone and 6-deoxoteasterone are oxidized.  go_component endomembrane system|GO:0012505||IEA  go_process brassinosteroid homeostasis|GO:0010268|15908602|IEP  go_process brassinosteroid biosynthetic process|GO:0016132|11402205|IDA  go_process brassinosteroid biosynthetic process|GO:0016132|12226529|TAS  go_function monooxygenase activity|GO:0004497|15710611|IDA  go_function oxygen binding|GO:0019825||ISS  product BR6OX1 (BRASSINOSTEROID-6-OXIDASE 1); monooxygenase/ oxygen binding  note BRASSINOSTEROID-6-OXIDASE 1 (BR6OX1); FUNCTIONS IN: monooxygenase activity, oxygen binding; INVOLVED IN: brassinosteroid homeostasis, brassinosteroid biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: fruit; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group IV (InterPro:IPR002403); BEST Arabidopsis thaliana protein match is: BR6OX2 (BRASSINOSTEROID-6-OXIDASE 2); monooxygenase/ oxygen binding (TAIR:AT3G30180.1); Has 15288 Blast hits to 15266 proteins in 1020 species: Archae - 20; Bacteria - 1776; Metazoa - 7630; Fungi - 1735; Plants - 3549; Viruses - 0; Other Eukaryotes - 578 (source: NCBI BLink).  protein_id AT5G38970.3p  transcript_id AT5G38970.3  protein_id AT5G38970.3p  transcript_id AT5G38970.3  
At5g38970	chr5:015597584	0.0	C/15597584-15597774,15597193-15597517,15596685-15596834,15596358-15596603,15596176-15596262,15596003-15596081,15595611-15595717,15595136-15595260,15594935-15595022	AT5G38970.1  CDS  gene_syn ATBR6OX, BR6OX, BR6OX1, BRASSINOSTEROID-6-OXIDASE, BRASSINOSTEROID-6-OXIDASE 1, CYP85A1, K15E6.150, K15E6_150  gene BR6OX1  function Encodes a polypeptide involved in the C-6 oxidation of brassinosteroids. Heterologous expression of the protein in yeast conferred the ability to catalyze multiple reactions in which the C-6 position of 6-deoxocastasterone, 6-deoxotyphasterol, 3-dehydro-6-deoxoteasterone and 6-deoxoteasterone are oxidized.  go_component endomembrane system|GO:0012505||IEA  go_process brassinosteroid homeostasis|GO:0010268|15908602|IEP  go_process brassinosteroid biosynthetic process|GO:0016132|11402205|IDA  go_process brassinosteroid biosynthetic process|GO:0016132|12226529|TAS  go_function monooxygenase activity|GO:0004497|15710611|IDA  go_function oxygen binding|GO:0019825||ISS  product BR6OX1 (BRASSINOSTEROID-6-OXIDASE 1); monooxygenase/ oxygen binding  note BRASSINOSTEROID-6-OXIDASE 1 (BR6OX1); FUNCTIONS IN: monooxygenase activity, oxygen binding; INVOLVED IN: brassinosteroid homeostasis, brassinosteroid biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: fruit; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group IV (InterPro:IPR002403), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: BR6OX2 (BRASSINOSTEROID-6-OXIDASE 2); monooxygenase/ oxygen binding (TAIR:AT3G30180.1); Has 20592 Blast hits to 20549 proteins in 1189 species: Archae - 21; Bacteria - 2713; Metazoa - 9122; Fungi - 3227; Plants - 4475; Viruses - 3; Other Eukaryotes - 1031 (source: NCBI BLink).  protein_id AT5G38970.1p  transcript_id AT5G38970.1  protein_id AT5G38970.1p  transcript_id AT5G38970.1  
At5g38975	chr5:015599620	0.0	W/15599620-15600044	AT5G38975.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.0e-15 P-value blast match to GB:CAA30503 pol polypeptide (Ty1_Copia-element) (Drosophila melanogaster)  
At5g38980	chr5:015606827	0.0	W/15606827-15607105	AT5G38980.1  CDS  gene_syn K15E6.160, K15E6_160  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G38980.1p  transcript_id AT5G38980.1  protein_id AT5G38980.1p  transcript_id AT5G38980.1  
At5g38990	chr5:015608824	0.0	W/15608824-15611466	AT5G38990.1  CDS  gene_syn K15E6.170, K15E6_170  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G39000.1); Has 83862 Blast hits to 82826 proteins in 3065 species: Archae - 44; Bacteria - 7137; Metazoa - 37106; Fungi - 6594; Plants - 18646; Viruses - 346; Other Eukaryotes - 13989 (source: NCBI BLink).  protein_id AT5G38990.1p  transcript_id AT5G38990.1  protein_id AT5G38990.1p  transcript_id AT5G38990.1  
At5g39000	chr5:015611860	0.0	W/15611860-15614481	AT5G39000.1  CDS  gene_syn MXF12.10, MXF12_10  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G38990.1); Has 84146 Blast hits to 83013 proteins in 3115 species: Archae - 42; Bacteria - 7211; Metazoa - 37327; Fungi - 6563; Plants - 18602; Viruses - 348; Other Eukaryotes - 14053 (source: NCBI BLink).  protein_id AT5G39000.1p  transcript_id AT5G39000.1  protein_id AT5G39000.1p  transcript_id AT5G39000.1  
At5g39010	chr5:015615948	0.0	W/15615948-15616457	AT5G39010.1  CDS  gene_syn MXF12.3, MXF12_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G39782.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G39010.1p  transcript_id AT5G39010.1  protein_id AT5G39010.1p  transcript_id AT5G39010.1  
At5g39020	chr5:015616917	0.0	W/15616917-15619358	AT5G39020.1  CDS  gene_syn MXF12.30, MXF12_30  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G39030.1); Has 82515 Blast hits to 81388 proteins in 3018 species: Archae - 63; Bacteria - 6806; Metazoa - 36665; Fungi - 6354; Plants - 18411; Viruses - 253; Other Eukaryotes - 13963 (source: NCBI BLink).  protein_id AT5G39020.1p  transcript_id AT5G39020.1  protein_id AT5G39020.1p  transcript_id AT5G39020.1  
At5g39024	chr5:015619691	0.0	W/15619691-15619786	AT5G39024.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G39024.1p  transcript_id AT5G39024.1  protein_id AT5G39024.1p  transcript_id AT5G39024.1  
At5g39030	chr5:015620066	0.0	W/15620066-15622486	AT5G39030.1  CDS  gene_syn MXF12.40, MXF12_40  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G39020.1); Has 83823 Blast hits to 82663 proteins in 3027 species: Archae - 71; Bacteria - 6989; Metazoa - 37485; Fungi - 6563; Plants - 18379; Viruses - 272; Other Eukaryotes - 14064 (source: NCBI BLink).  protein_id AT5G39030.1p  transcript_id AT5G39030.1  protein_id AT5G39030.1p  transcript_id AT5G39030.1  
At5g39040	chr5:015625660	0.0	W/15625660-15625746,15626107-15626172,15626251-15626286,15626366-15626440,15626585-15626709,15626789-15626888,15627051-15627222,15627321-15627439,15627533-15627643,15627736-15627880,15627960-15628092,15628182-15628257,15628480-15628545,15628633-15628740,15628839-15628946,15629121-15629318,15629412-15629621	AT5G39040.1  CDS  gene_syn ATTAP2, MXF12.50, MXF12_50  gene ATTAP2  function member of TAP subfamily  go_component plant-type vacuole|GO:0000325|16618929|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process transport|GO:0006810||IEA  go_component vacuolar membrane|GO:0005774|16618929|IDA  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ATTAP2; ATPase, coupled to transmembrane movement of substances / transporter  note ATTAP2; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: transport; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PGP5 (P-GLYCOPROTEIN 5); ATPase, coupled to transmembrane movement of substances (TAIR:AT4G01830.1); Has 254875 Blast hits to 230369 proteins in 2674 species: Archae - 4387; Bacteria - 169057; Metazoa - 8728; Fungi - 4912; Plants - 2808; Viruses - 29; Other Eukaryotes - 64954 (source: NCBI BLink).  protein_id AT5G39040.1p  transcript_id AT5G39040.1  protein_id AT5G39040.1p  transcript_id AT5G39040.1  
At5g39050	chr5:015634596	0.0	W/15634596-15636005	AT5G39050.1  CDS  gene_syn MXF12.60, MXF12_60  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase/ transferase, transferring acyl groups other than amino-acyl groups  note transferase/ transferase, transferring acyl groups other than amino-acyl groups; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT5G39080.1); Has 875 Blast hits to 873 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 14; Plants - 860; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G39050.1p  transcript_id AT5G39050.1  protein_id AT5G39050.1p  transcript_id AT5G39050.1  
At5g39060	chr5:015636613	0.0	C/15636613-15638509	AT5G39060.1  mRNA_TE_gene  pseudo  gene_syn MXF12.8, MXF12_8  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 7.3e-252 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At5g39070	chr5:015640053	0.0	C/15640053-15640789	AT5G39070.1  mRNA_TE_gene  pseudo  gene_syn MXF12.9, MXF12_9  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 3.9e-50 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At5g39080	chr5:015641681	0.0	W/15641681-15643072	AT5G39080.1  CDS  gene_syn MXF12.90, MXF12_90  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase/ transferase, transferring acyl groups other than amino-acyl groups (TAIR:AT5G39050.1); Has 1069 Blast hits to 1059 proteins in 103 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 35; Plants - 1033; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G39080.1p  transcript_id AT5G39080.1  protein_id AT5G39080.1p  transcript_id AT5G39080.1  
At5g39090	chr5:015643612	0.0	W/15643612-15644958	AT5G39090.1  CDS  gene_syn MXF12.100, MXF12_100  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase/ transferase, transferring acyl groups other than amino-acyl groups (TAIR:AT5G39050.1); Has 1090 Blast hits to 1080 proteins in 103 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 1072; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G39090.1p  transcript_id AT5G39090.1  protein_id AT5G39090.1p  transcript_id AT5G39090.1  
At5g39095	chr5:015646351	0.0	C/15646351-15650784	AT5G39095.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.1e-250 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)  
At5g39100	chr5:015653204	0.0	C/15653204-15653596	AT5G39100.1  CDS  gene_syn GERMIN-LIKE PROTEIN 6, GLP6, MXF12.13, MXF12_13  gene GLP6  function germin-like protein (GLP6)  go_component apoplast|GO:0048046||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process biological_process|GO:0008150||ND  product GLP6 (GERMIN-LIKE PROTEIN 6); manganese ion binding / nutrient reservoir  note GERMIN-LIKE PROTEIN 6 (GLP6); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), Germin (InterPro:IPR001929), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: germin-like protein, putative (TAIR:AT5G39150.1); Has 846 Blast hits to 846 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 27; Plants - 812; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G39100.1p  transcript_id AT5G39100.1  protein_id AT5G39100.1p  transcript_id AT5G39100.1  
At5g39110	chr5:015658461	0.0	C/15658461-15658584,15657802-15658346	AT5G39110.1  CDS  gene_syn MXF12.120, MXF12_120  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process biological_process|GO:0008150||ND  product germin-like protein, putative  note germin-like protein, putative; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: germin-like protein, putative (TAIR:AT5G39150.1); Has 852 Blast hits to 850 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 27; Plants - 818; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G39110.1p  transcript_id AT5G39110.1  protein_id AT5G39110.1p  transcript_id AT5G39110.1  
At5g39120	chr5:015663366	0.0	C/15663366-15663486,15662705-15663249	AT5G39120.1  CDS  gene_syn MXF12.130, MXF12_130  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process biological_process|GO:0008150||ND  product germin-like protein, putative  note germin-like protein, putative; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: germin-like protein, putative (TAIR:AT5G39150.1); Has 853 Blast hits to 851 proteins in 78 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 27; Plants - 817; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G39120.1p  transcript_id AT5G39120.1  protein_id AT5G39120.1p  transcript_id AT5G39120.1  
At5g39130	chr5:015666293	0.0	C/15666293-15666413,15665638-15666185	AT5G39130.1  CDS  gene_syn MXF12.140, MXF12_140  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process biological_process|GO:0008150||ND  product germin-like protein, putative  note germin-like protein, putative; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: GER2 (GERMIN-LIKE PROTEIN 2); oxalate oxidase (TAIR:AT5G39190.1); Has 844 Blast hits to 842 proteins in 74 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 18; Plants - 817; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G39130.1p  transcript_id AT5G39130.1  protein_id AT5G39130.1p  transcript_id AT5G39130.1  
At5g39140	chr5:015667487	0.0	C/15667487-15667761,15667173-15667356	AT5G39140.1  CDS  gene_syn MXF12.17, MXF12_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39200.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G39140.1p  transcript_id AT5G39140.1  protein_id AT5G39140.1p  transcript_id AT5G39140.1  
At5g39150	chr5:015670669	0.0	C/15670669-15670789,15670008-15670552	AT5G39150.1  CDS  gene_syn MXF12.160, MXF12_160  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process biological_process|GO:0008150||ND  product germin-like protein, putative  note germin-like protein, putative; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: germin-like protein, putative (TAIR:AT5G39180.1); Has 853 Blast hits to 851 proteins in 78 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 27; Plants - 817; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G39150.1p  transcript_id AT5G39150.1  protein_id AT5G39150.1p  transcript_id AT5G39150.1  
At5g39155	chr5:015671637	0.0	C/15671637-15676129	AT5G39155.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.0e-190 P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At5g39160	chr5:015679850	0.0	C/15679850-15679970,15679195-15679676	AT5G39160.2  CDS  gene_syn K3K3.1, K3K3_1  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process biological_process|GO:0008150||ND  product germin-like protein (GLP2a) (GLP5a)  note germin-like protein (GLP2a) (GLP5a); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: GER2 (GERMIN-LIKE PROTEIN 2); oxalate oxidase (TAIR:AT5G39190.2); Has 845 Blast hits to 843 proteins in 76 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 22; Plants - 814; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G39160.2p  transcript_id AT5G39160.2  protein_id AT5G39160.2p  transcript_id AT5G39160.2  
At5g39160	chr5:015679850	0.0	C/15679850-15679970,15679195-15679742	AT5G39160.1  CDS  gene_syn K3K3.1, K3K3_1  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process biological_process|GO:0008150||ND  product germin-like protein (GLP2a) (GLP5a)  note germin-like protein (GLP2a) (GLP5a); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: GER2 (GERMIN-LIKE PROTEIN 2); oxalate oxidase (TAIR:AT5G39190.1); Has 846 Blast hits to 844 proteins in 76 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 22; Plants - 815; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G39160.1p  transcript_id AT5G39160.1  protein_id AT5G39160.1p  transcript_id AT5G39160.1  
At5g39170	chr5:015681051	0.0	C/15681051-15681325,15680731-15680920	AT5G39170.1  CDS  gene_syn K3K3.3, K3K3_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39200.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G39170.1p  transcript_id AT5G39170.1  protein_id AT5G39170.1p  transcript_id AT5G39170.1  
At5g39180	chr5:015684233	0.0	C/15684233-15684353,15683572-15684116	AT5G39180.1  CDS  gene_syn K3K3.30, K3K3_30  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process biological_process|GO:0008150||ND  product germin-like protein, putative  note germin-like protein, putative; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: germin-like protein, putative (TAIR:AT5G39150.1); Has 853 Blast hits to 851 proteins in 78 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 27; Plants - 817; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G39180.1p  transcript_id AT5G39180.1  protein_id AT5G39180.1p  transcript_id AT5G39180.1  
At5g39185	chr5:015685228	0.0	C/15685228-15689705	AT5G39185.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.8e-17 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element)  
At5g39190	chr5:015693426	0.0	C/15693426-15693546,15692771-15693252	AT5G39190.2  CDS  gene_syn A. THALIANA GERMIN LIKE PROTEIN 2, ATGER2, GER2, GERMIN-LIKE PROTEIN 2, GERMIN-LIKE PROTEIN 2A, GLP2A, K3K3.40, K3K3_40  gene GER2  function germin-like protein (GLP2a)  go_component extracellular matrix|GO:0031012|10987552|IDA  go_process biological_process|GO:0008150||ND  go_function oxalate oxidase activity|GO:0050162|10987552|IDA  product GER2 (GERMIN-LIKE PROTEIN 2); oxalate oxidase  note GERMIN-LIKE PROTEIN 2 (GER2); FUNCTIONS IN: oxalate oxidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: extracellular matrix; EXPRESSED IN: stem, fruit; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: germin-like protein (GLP2a) (GLP5a) (TAIR:AT5G39160.2); Has 848 Blast hits to 846 proteins in 76 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 22; Plants - 817; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G39190.2p  transcript_id AT5G39190.2  protein_id AT5G39190.2p  transcript_id AT5G39190.2  
At5g39190	chr5:015693426	0.0	C/15693426-15693546,15692771-15693318	AT5G39190.1  CDS  gene_syn A. THALIANA GERMIN LIKE PROTEIN 2, ATGER2, GER2, GERMIN-LIKE PROTEIN 2, GERMIN-LIKE PROTEIN 2A, GLP2A, K3K3.40, K3K3_40  gene GER2  function germin-like protein (GLP2a)  go_component extracellular matrix|GO:0031012|10987552|IDA  go_process biological_process|GO:0008150||ND  go_function oxalate oxidase activity|GO:0050162|10987552|IDA  product GER2 (GERMIN-LIKE PROTEIN 2); oxalate oxidase  note GERMIN-LIKE PROTEIN 2 (GER2); FUNCTIONS IN: oxalate oxidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: extracellular matrix; EXPRESSED IN: stem, fruit; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), Germin (InterPro:IPR001929), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: germin-like protein (GLP2a) (GLP5a) (TAIR:AT5G39160.1); Has 848 Blast hits to 846 proteins in 76 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 22; Plants - 817; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G39190.1p  transcript_id AT5G39190.1  protein_id AT5G39190.1p  transcript_id AT5G39190.1  
At5g39200	chr5:015694621	0.0	C/15694621-15695042,15694307-15694490	AT5G39200.1  CDS  gene_syn K3K3.7, K3K3_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: pollen tube; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39140.1); Has 28 Blast hits to 28 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G39200.1p  transcript_id AT5G39200.1  protein_id AT5G39200.1p  transcript_id AT5G39200.1  
At5g39205	chr5:015700770	0.0	W/15700770-15700976	AT5G39205.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G43770.1); similar to hypothetical protein 25.t00001 [Brassica oleracea] (GB:ABD64964.1)  
At5g39210	chr5:015703231	0.0	W/15703231-15703285,15703387-15703529,15703727-15703999	AT5G39210.1  CDS  gene_syn CHLORORESPIRATORY REDUCTION 7, CRR7, K3K3.10, K3K3_10  gene CRR7  function Encodes a protein of the chloroplastic NAD(P)H dehydrogenase complex (NDH Complex) involved in respiration, photosystem I (PSI) cyclic electron transport and CO2 uptake. The product of this gene appears to be essential for the stable formation of the NDH Complex.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|16359395|IDA  go_component NAD(P)H dehydrogenase complex (plastoquinone)|GO:0010598|16359395|IGI  go_component membrane|GO:0016020|16359395|IDA  go_process NAD(P)H dehydrogenase complex assembly|GO:0010275|16359395|IGI  go_function molecular_function|GO:0003674||ND  product CRR7 (CHLORORESPIRATORY REDUCTION 7)  note CHLORORESPIRATORY REDUCTION 7 (CRR7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: NAD(P)H dehydrogenase complex assembly; LOCATED IN: chloroplast, NAD(P)H dehydrogenase complex (plastoquinone), membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; Has 107 Blast hits to 107 proteins in 46 species: Archae - 0; Bacteria - 77; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT5G39210.1p  transcript_id AT5G39210.1  protein_id AT5G39210.1p  transcript_id AT5G39210.1  
At5g39220	chr5:015705913	0.0	W/15705913-15706089,15706193-15706290,15706382-15706479,15706584-15706633,15707047-15707142,15707239-15707328,15707400-15707492,15707575-15707670,15707774-15707839,15707911-15708039	AT5G39220.1  CDS  gene_syn K3K3.12, K3K3_12  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT1G13820.1); Has 2166 Blast hits to 2166 proteins in 457 species: Archae - 23; Bacteria - 1408; Metazoa - 144; Fungi - 8; Plants - 119; Viruses - 0; Other Eukaryotes - 464 (source: NCBI BLink).  protein_id AT5G39220.1p  transcript_id AT5G39220.1  protein_id AT5G39220.1p  transcript_id AT5G39220.1  
At5g39230	chr5:015709474	0.0	W/15709474-15709792,15709885-15709925	AT5G39230.1  CDS  gene_syn K3K3.13, K3K3_13  go_component transcription factor complex|GO:0005667||IEA  go_process transcription initiation|GO:0006352||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function transcription regulator activity|GO:0030528||IEA  product transcription initiation factor-related  note transcription initiation factor-related; FUNCTIONS IN: transcription regulator activity, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription, transcription initiation; LOCATED IN: transcription factor complex; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Zinc finger, TFIIB-type (InterPro:IPR013137); BEST Arabidopsis thaliana protein match is: transcription factor IIB (TFIIB) family protein (TAIR:AT3G29380.1); Has 53 Blast hits to 53 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G39230.1p  transcript_id AT5G39230.1  protein_id AT5G39230.1p  transcript_id AT5G39230.1  
At5g39240	chr5:015712683	0.0	C/15712683-15713003	AT5G39240.1  CDS  gene_syn K3K3.14, K3K3_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G29370.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G39240.1p  transcript_id AT5G39240.1  protein_id AT5G39240.1p  transcript_id AT5G39240.1  
At5g39245	chr5:015718364	0.0	C/15718364-15722158	AT5G39245.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 7.0e-51 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At5g39250	chr5:015724860	0.0	W/15724860-15725618	AT5G39250.1  CDS  gene_syn K3K3.16, K3K3_16  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); Has 35 Blast hits to 35 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G39250.1p  transcript_id AT5G39250.1  protein_id AT5G39250.1p  transcript_id AT5G39250.1  
At5g39260	chr5:015727230	0.0	C/15727230-15727416,15726479-15727080	AT5G39260.1  CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN A21, ATEXP21, ATEXPA21, ATHEXP ALPHA 1.20, EXP21, EXPANSIN 21, K3K3.110, K3K3_110  gene ATEXPA21  function expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828||ISS  go_process plant-type cell wall modification during multidimensional cell growth|GO:0009831||ISS  product ATEXPA21 (ARABIDOPSIS THALIANA EXPANSIN A21)  note ARABIDOPSIS THALIANA EXPANSIN A21 (ATEXPA21); INVOLVED IN: plant-type cell wall modification during multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: ATEXPA25 (ARABIDOPSIS THALIANA EXPANSIN A25) (TAIR:AT5G39300.1); Has 1501 Blast hits to 1500 proteins in 148 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 32; Plants - 1436; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT5G39260.1p  transcript_id AT5G39260.1  protein_id AT5G39260.1p  transcript_id AT5G39260.1  
At5g39270	chr5:015729973	0.0	C/15729973-15730150,15729118-15729731	AT5G39270.1  CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN A22, ATEXP22, ATEXPA22, ATHEXP ALPHA 1.15, EXP22, EXPANSIN 22, K3K3.120, K3K3_120  gene ATEXPA22  function expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)  go_component extracellular region|GO:0005576||IEA  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828||ISS  product ATEXPA22 (ARABIDOPSIS THALIANA EXPANSIN A22)  note ARABIDOPSIS THALIANA EXPANSIN A22 (ATEXPA22); INVOLVED IN: unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: extracellular region; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: ATEXP26 (ARABIDOPSIS THALIANA EXPANSIN A26) (TAIR:AT5G39290.1); Has 1452 Blast hits to 1450 proteins in 129 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 31; Plants - 1379; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT5G39270.1p  transcript_id AT5G39270.1  protein_id AT5G39270.1p  transcript_id AT5G39270.1  
At5g39280	chr5:015731541	0.0	C/15731541-15731706,15730713-15731326	AT5G39280.1  CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN A23, ATEXP23, ATEXPA23, ATHEXP ALPHA 1.17, EXPANSIN 23, K3K3.130, K3K3_130  gene ATEXPA23  function member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)  go_component extracellular region|GO:0005576||IEA  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828||ISS  go_process plant-type cell wall modification during multidimensional cell growth|GO:0009831||ISS  product ATEXPA23 (ARABIDOPSIS THALIANA EXPANSIN A23)  note ARABIDOPSIS THALIANA EXPANSIN A23 (ATEXPA23); INVOLVED IN: plant-type cell wall modification during multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: extracellular region; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: ATEXPA25 (ARABIDOPSIS THALIANA EXPANSIN A25) (TAIR:AT5G39300.1); Has 1436 Blast hits to 1435 proteins in 129 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 27; Plants - 1373; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT5G39280.1p  transcript_id AT5G39280.1  protein_id AT5G39280.1p  transcript_id AT5G39280.1  
At5g39290	chr5:015736731	0.0	C/15736731-15736908,15735871-15736484	AT5G39290.1  CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN A26, ATEXP26, ATHEXP ALPHA 1.16, EXP26, EXPANSIN 26, K3K3.140, K3K3_140  gene ATEXP26  function member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)  go_component extracellular region|GO:0005576||IEA  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828||ISS  go_process plant-type cell wall modification during multidimensional cell growth|GO:0009831||ISS  product ATEXP26 (ARABIDOPSIS THALIANA EXPANSIN A26)  note ARABIDOPSIS THALIANA EXPANSIN A26 (ATEXP26); INVOLVED IN: plant-type cell wall modification during multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: extracellular region; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: ATEXPA22 (ARABIDOPSIS THALIANA EXPANSIN A22) (TAIR:AT5G39270.1); Has 1451 Blast hits to 1449 proteins in 128 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 29; Plants - 1380; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT5G39290.1p  transcript_id AT5G39290.1  protein_id AT5G39290.1p  transcript_id AT5G39290.1  
At5g39300	chr5:015738219	0.0	C/15738219-15738387,15737427-15738040	AT5G39300.1  CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN A25, ATEXP25, ATEXPA25, ATHEXP ALPHA 1.18, EXP25, EXPANSIN 25, K3K3.150, K3K3_150  gene ATEXPA25  function member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)  go_component extracellular region|GO:0005576||IEA  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828||ISS  go_process plant-type cell wall modification during multidimensional cell growth|GO:0009831||ISS  product ATEXPA25 (ARABIDOPSIS THALIANA EXPANSIN A25)  note ARABIDOPSIS THALIANA EXPANSIN A25 (ATEXPA25); INVOLVED IN: plant-type cell wall modification during multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: extracellular region; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: ATEXPA23 (ARABIDOPSIS THALIANA EXPANSIN A23) (TAIR:AT5G39280.1); Has 1427 Blast hits to 1426 proteins in 127 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 24; Plants - 1372; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT5G39300.1p  transcript_id AT5G39300.1  protein_id AT5G39300.1p  transcript_id AT5G39300.1  
At5g39310	chr5:015740241	0.0	C/15740241-15740514,15739280-15739896	AT5G39310.1  CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN A24, ATEXP24, ATEXPA24, ATHEXP ALPHA 1.19, EXP24, EXPANSIN 24, K3K3.160, K3K3_160  gene ATEXPA24  function member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)  go_component extracellular region|GO:0005576||IEA  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828||ISS  product ATEXPA24 (ARABIDOPSIS THALIANA EXPANSIN A24)  note ARABIDOPSIS THALIANA EXPANSIN A24 (ATEXPA24); INVOLVED IN: unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: extracellular region; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, carpel; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: ATEXPA25 (ARABIDOPSIS THALIANA EXPANSIN A25) (TAIR:AT5G39300.1); Has 2555 Blast hits to 2086 proteins in 286 species: Archae - 0; Bacteria - 287; Metazoa - 401; Fungi - 82; Plants - 1491; Viruses - 1; Other Eukaryotes - 293 (source: NCBI BLink).  protein_id AT5G39310.1p  transcript_id AT5G39310.1  protein_id AT5G39310.1p  transcript_id AT5G39310.1  
At5g39320	chr5:015743254	0.0	W/15743254-15744696	AT5G39320.1  CDS  gene_syn K3K3.170, K3K3_170  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_function UDP-glucose 6-dehydrogenase activity|GO:0003979||ISS  product UDP-glucose 6-dehydrogenase, putative  note UDP-glucose 6-dehydrogenase, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucose/GDP-mannose dehydrogenase, N-terminal (InterPro:IPR001732), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding (InterPro:IPR014028), UDP-glucose/GDP-mannose dehydrogenase, C-terminal (InterPro:IPR014027), NAD(P)-binding (InterPro:IPR016040), UDP-glucose/GDP-mannose dehydrogenase, dimerisation (InterPro:IPR014026), Nucleotide sugar dehydrogenase (InterPro:IPR017476); BEST Arabidopsis thaliana protein match is: UDP-glucose 6-dehydrogenase, putative (TAIR:AT3G29360.2); Has 10074 Blast hits to 10058 proteins in 1240 species: Archae - 198; Bacteria - 3918; Metazoa - 183; Fungi - 74; Plants - 117; Viruses - 14; Other Eukaryotes - 5570 (source: NCBI BLink).  protein_id AT5G39320.1p  transcript_id AT5G39320.1  protein_id AT5G39320.1p  transcript_id AT5G39320.1  
At5g39330	chr5:015746269	0.0	W/15746269-15746624,15746731-15747007	AT5G39330.1  CDS  gene_syn MUL8.1, MUL8_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1163 (InterPro:IPR009544); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70020.1); Has 20 Blast hits to 20 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G39330.1p  transcript_id AT5G39330.1  protein_id AT5G39330.1p  transcript_id AT5G39330.1  
At5g39330	chr5:015746269	0.0	W/15746269-15746624,15746737-15747007	AT5G39330.2  CDS  gene_syn MUL8.1, MUL8_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1163 (InterPro:IPR009544); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70020.1); Has 20 Blast hits to 20 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G39330.2p  transcript_id AT5G39330.2  protein_id AT5G39330.2p  transcript_id AT5G39330.2  
At5g39340	chr5:015748941	0.0	W/15748941-15749006,15749496-15749626,15749708-15749779,15749872-15749943,15750043-15750115,15750195-15750248	AT5G39340.1  CDS  gene_syn AHP3, ARABIDOPSIS THALIANA HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2, ATHP2, HIS-ASP PHOSPHOTRANSFER SIGNAL TRANSDUCER, HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3, MUL8.20, MUL8_20  gene AHP3  function Encodes AHP3, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs) involved in Histidine (His)-to-Aspartate (Asp) phosphorelay signal transduction. AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleus|GO:0005634|17122069|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component cytoplasm|GO:0005737|17122069|IDA  go_process two-component signal transduction system (phosphorelay)|GO:0000160|11193423|ISS  go_process cytokinin mediated signaling|GO:0009736|17122069|IGI  go_process cytokinin mediated signaling|GO:0009736|17122069|IMP  go_function histidine phosphotransfer kinase activity|GO:0009927|10050311|IDA  go_function histidine phosphotransfer kinase activity|GO:0009927|10608665|IDA  go_function histidine phosphotransfer kinase activity|GO:0009927|9804162|IDA  go_function histidine phosphotransfer kinase activity|GO:0009927||ISS  product AHP3 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3); histidine phosphotransfer kinase  note HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3 (AHP3); FUNCTIONS IN: histidine phosphotransfer kinase activity; INVOLVED IN: cytokinin mediated signaling, two-component signal transduction system (phosphorelay); LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, phosphotransfer (Hpt) region (InterPro:IPR008207); BEST Arabidopsis thaliana protein match is: AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2); histidine phosphotransfer kinase/ protein binding / signal transducer (TAIR:AT3G29350.1); Has 195 Blast hits to 194 proteins in 45 species: Archae - 2; Bacteria - 41; Metazoa - 0; Fungi - 12; Plants - 138; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G39340.1p  transcript_id AT5G39340.1  protein_id AT5G39340.1p  transcript_id AT5G39340.1  
At5g39350	chr5:015750929	0.0	W/15750929-15752962	AT5G39350.1  CDS  gene_syn MUL8.30, MUL8_30  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, sperm cell, embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: DOT4 (DEFECTIVELY ORGANIZED TRIBUTARIES 4) (TAIR:AT4G18750.1); Has 15582 Blast hits to 5140 proteins in 148 species: Archae - 1; Bacteria - 2; Metazoa - 159; Fungi - 77; Plants - 14975; Viruses - 0; Other Eukaryotes - 368 (source: NCBI BLink).  protein_id AT5G39350.1p  transcript_id AT5G39350.1  protein_id AT5G39350.1p  transcript_id AT5G39350.1  
At5g39360	chr5:015753313	0.0	C/15753313-15754062	AT5G39360.1  CDS  gene_syn EDL2, EID1-like 2, MUL8.4, MUL8_4  gene EDL2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product EDL2 (EID1-like 2)  note EID1-like 2 (EDL2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: EDL1 (EID1-like 1) (TAIR:AT5G15440.1); Has 58 Blast hits to 54 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G39360.1p  transcript_id AT5G39360.1  protein_id AT5G39360.1p  transcript_id AT5G39360.1  
At5g39365	chr5:015756827	0.0	C/15756827-15756884,15756299-15756510	AT5G39365.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24615.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G39365.1p  transcript_id AT5G39365.1  protein_id AT5G39365.1p  transcript_id AT5G39365.1  
At5g39370	chr5:015757717	0.0	W/15757717-15758109	AT5G39370.1  CDS  gene_syn MUL8.5, MUL8_5  go_function sugar binding|GO:0005529||IEA  go_process biological_process|GO:0008150||ND  go_function sugar binding|GO:0005529||ISS  product S-locus glycoprotein, putative  note S-locus glycoprotein, putative; FUNCTIONS IN: sugar binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480); BEST Arabidopsis thaliana protein match is: ARK2 (A. THALIANA RECEPTOR KINASE 2); kinase/ protein kinase/ transmembrane receptor protein serine/threonine kinase (TAIR:AT1G65800.1); Has 1383 Blast hits to 1353 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1383; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G39370.1p  transcript_id AT5G39370.1  protein_id AT5G39370.1p  transcript_id AT5G39370.1  
At5g39380	chr5:015759163	0.0	C/15759163-15760686	AT5G39380.1  CDS  gene_syn MUL8.6, MUL8_6  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product calmodulin-binding protein-related  note calmodulin-binding protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Calmodulin-binding, plant (InterPro:IPR012417); BEST Arabidopsis thaliana protein match is: calmodulin-binding protein-related (TAIR:AT5G15430.1); Has 1393 Blast hits to 1210 proteins in 152 species: Archae - 0; Bacteria - 36; Metazoa - 714; Fungi - 97; Plants - 102; Viruses - 10; Other Eukaryotes - 434 (source: NCBI BLink).  protein_id AT5G39380.1p  transcript_id AT5G39380.1  protein_id AT5G39380.1p  transcript_id AT5G39380.1  
At5g39390	chr5:015765122	0.0	C/15765122-15765469,15764791-15765027,15764128-15764734,15763715-15764031	AT5G39390.1  CDS  gene_syn MUL8.7, MUL8_7  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function protein kinase activity|GO:0004672||ISS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein / protein kinase family protein  note leucine-rich repeat family protein / protein kinase family protein; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: EFR (EF-TU RECEPTOR); ATP binding / kinase/ protein serine/threonine kinase (TAIR:AT5G20480.1); Has 74983 Blast hits to 72993 proteins in 2998 species: Archae - 44; Bacteria - 6664; Metazoa - 31753; Fungi - 5418; Plants - 19086; Viruses - 279; Other Eukaryotes - 11739 (source: NCBI BLink).  protein_id AT5G39390.1p  transcript_id AT5G39390.1  protein_id AT5G39390.1p  transcript_id AT5G39390.1  
At5g39400	chr5:015766251	0.0	W/15766251-15766532,15766606-15766782,15766844-15766957,15767021-15767200,15767286-15767528,15767602-15767703,15767782-15767922	AT5G39400.1  CDS  gene_syn ATPTEN1, MUL8.8, MUL8_8, PTEN1  gene PTEN1  go_component cellular_component|GO:0005575||ND  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_process pollen development|GO:0009555|12368500|IMP  go_function phosphatase activity|GO:0016791|12368500|IDA  go_function phosphatase activity|GO:0016791||ISS  product PTEN1; phosphatase  note PTEN1; FUNCTIONS IN: phosphatase activity; INVOLVED IN: N-terminal protein myristoylation, pollen development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Phosphatase tensin type (InterPro:IPR014019), Protein-tyrosine phosphatase, dual specificity (InterPro:IPR000340), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Tensin phosphatase, C2 domain (InterPro:IPR014020); BEST Arabidopsis thaliana protein match is: ATPEN2 (ARABIDOPSIS THALIANA PTEN 2); phosphatase/ protein tyrosine phosphatase (TAIR:AT3G19420.1); Has 1145 Blast hits to 1141 proteins in 148 species: Archae - 6; Bacteria - 19; Metazoa - 735; Fungi - 150; Plants - 35; Viruses - 0; Other Eukaryotes - 200 (source: NCBI BLink).  protein_id AT5G39400.1p  transcript_id AT5G39400.1  protein_id AT5G39400.1p  transcript_id AT5G39400.1  
At5g39410	chr5:015769925	0.0	C/15769925-15770274,15769231-15769555,15768415-15769104	AT5G39410.1  CDS  go_component mitochondrion|GO:0005739|15276431|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  product binding / catalytic  note binding / catalytic; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion, plasma membrane, vacuole, membrane, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Saccharopine dehydrogenase (InterPro:IPR005097), NAD(P)-binding (InterPro:IPR016040); Has 1397 Blast hits to 1395 proteins in 304 species: Archae - 10; Bacteria - 481; Metazoa - 160; Fungi - 66; Plants - 27; Viruses - 0; Other Eukaryotes - 653 (source: NCBI BLink).  protein_id AT5G39410.1p  transcript_id AT5G39410.1  protein_id AT5G39410.1p  transcript_id AT5G39410.1  
At5g39420	chr5:015772232	0.0	W/15772232-15772561,15772655-15772939,15773033-15773350,15773499-15773726,15773817-15773914,15773992-15774100,15774181-15774600,15774689-15774818,15774913-15774929	AT5G39420.1  CDS  gene_syn Arabidopsis thaliana cdc2c, MUL8.100, MUL8_100, cdc2cAt  gene cdc2cAt  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product cdc2cAt (Arabidopsis thaliana cdc2c); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note Arabidopsis thaliana cdc2c (cdc2cAt); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G01085.1); Has 91636 Blast hits to 90430 proteins in 3175 species: Archae - 46; Bacteria - 7811; Metazoa - 40253; Fungi - 8457; Plants - 17630; Viruses - 429; Other Eukaryotes - 17010 (source: NCBI BLink).  protein_id AT5G39420.1p  transcript_id AT5G39420.1  protein_id AT5G39420.1p  transcript_id AT5G39420.1  
At5g39430	chr5:015777467	0.0	C/15777467-15777599,15777281-15777361,15776738-15777181,15776487-15776625,15776227-15776389,15776022-15776150,15775736-15775930,15775517-15775639,15775302-15775430	AT5G39430.1  CDS  gene_syn MUL8.11, MUL8_11  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G29180.1); Has 140 Blast hits to 140 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT5G39430.1p  transcript_id AT5G39430.1  protein_id AT5G39430.1p  transcript_id AT5G39430.1  
At5g39440	chr5:015781907	0.0	W/15781907-15782096,15782547-15782731,15782832-15783014,15783109-15783237,15783315-15783500,15783587-15783676,15783766-15783855,15783953-15784078,15784224-15784415,15784586-15784699	AT5G39440.1  CDS  gene_syn MUL8.120, MUL8_120, SNF1-RELATED PROTEIN KINASE 1.3, SnRK1.3  gene SnRK1.3  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product SnRK1.3 (SNF1-RELATED PROTEIN KINASE 1.3); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note SNF1-RELATED PROTEIN KINASE 1.3 (SnRK1.3); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Kinase-associated KA1 (InterPro:IPR001772), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Snf1-like protein AMPK (InterPro:IPR015741), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: AKIN11 (Arabidopsis SNF1 kinase homolog 11); protein binding / protein kinase (TAIR:AT3G29160.2); Has 97987 Blast hits to 96191 proteins in 3326 species: Archae - 79; Bacteria - 8589; Metazoa - 42351; Fungi - 9001; Plants - 18634; Viruses - 491; Other Eukaryotes - 18842 (source: NCBI BLink).  protein_id AT5G39440.1p  transcript_id AT5G39440.1  protein_id AT5G39440.1p  transcript_id AT5G39440.1  
At5g39450	chr5:015786045	0.0	W/15786045-15786053,15786147-15787877	AT5G39450.1  CDS  gene_syn MUL8.13, MUL8_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G39460.1); Has 26 Blast hits to 26 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G39450.1p  transcript_id AT5G39450.1  protein_id AT5G39450.1p  transcript_id AT5G39450.1  
At5g39460	chr5:015788289	0.0	C/15788289-15790004	AT5G39460.1  CDS  gene_syn MUL8.14, MUL8_14  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G39480.1); Has 23 Blast hits to 23 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G39460.1p  transcript_id AT5G39460.1  protein_id AT5G39460.1p  transcript_id AT5G39460.1  
At5g39470	chr5:015792852	0.0	C/15792852-15793062,15792407-15792465,15792110-15792271,15791952-15792032	AT5G39470.1  CDS  gene_syn MUL8.150, MUL8_150  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G39460.1); Has 16 Blast hits to 16 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G39470.1p  transcript_id AT5G39470.1  protein_id AT5G39470.1p  transcript_id AT5G39470.1  
At5g39471	chr5:015793965	0.0	C/15793965-15795596	AT5G39471.1  CDS  go_component intracellular|GO:0005622||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular signaling cascade; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, RING-type (InterPro:IPR001841), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT5G26190.1); Has 1121 Blast hits to 575 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 77; Fungi - 0; Plants - 994; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT5G39471.1p  transcript_id AT5G39471.1  protein_id AT5G39471.1p  transcript_id AT5G39471.1  
At5g39473	chr5:015797758	0.0	C/15797758-15799724	AT5G39473.1  pseudogenic_transcript  pseudo  function pseudogene of DC1 (domain-containing protein)  
At5g39480	chr5:015801635	0.0	C/15801635-15803341	AT5G39480.1  CDS  gene_syn MUL8.17, MUL8_17  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G39490.1); Has 23 Blast hits to 23 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G39480.1p  transcript_id AT5G39480.1  protein_id AT5G39480.1p  transcript_id AT5G39480.1  
At5g39490	chr5:015805808	0.0	C/15805808-15807508	AT5G39490.1  CDS  gene_syn MUL8.18, MUL8_18  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G39480.1); Has 23 Blast hits to 23 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G39490.1p  transcript_id AT5G39490.1  protein_id AT5G39490.1p  transcript_id AT5G39490.1  
At5g39493	chr5:015810269	0.0	C/15810269-15810418	AT5G39493.1  CDS  product unknown protein  note unknown protein; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G39493.1p  transcript_id AT5G39493.1  protein_id AT5G39493.1p  transcript_id AT5G39493.1  
At5g39500	chr5:015815274	0.0	W/15815274-15815996,15816302-15819910	AT5G39500.1  CDS  gene_syn MUL8.180, MUL8_180  go_component intracellular|GO:0005622||IEA  go_process regulation of ARF protein signal transduction|GO:0032012||IEA  go_function ARF guanyl-nucleotide exchange factor activity|GO:0005086||IEA  product pattern formation protein, putative  note pattern formation protein, putative; FUNCTIONS IN: ARF guanyl-nucleotide exchange factor activity; INVOLVED IN: regulation of ARF protein signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904); BEST Arabidopsis thaliana protein match is: GN (GNOM); GTP:GDP antiporter/ protein homodimerization (TAIR:AT1G13980.1); Has 2185 Blast hits to 1859 proteins in 176 species: Archae - 0; Bacteria - 24; Metazoa - 1263; Fungi - 450; Plants - 123; Viruses - 0; Other Eukaryotes - 325 (source: NCBI BLink).  protein_id AT5G39500.1p  transcript_id AT5G39500.1  protein_id AT5G39500.1p  transcript_id AT5G39500.1  
At5g39510	chr5:015822035	0.0	W/15822035-15822128,15822657-15822715,15822803-15822991,15823096-15823266,15823439-15823591	AT5G39510.1  CDS  gene_syn ATVTI11, ATVTI1A, MUL8.190, MUL8_190, SGR4, SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, VTI11, VTI1A, ZIG  gene SGR4  function Encodes a member of SNARE gene family. Homologous with yeast VTI1 and is involved in vesicle transport. Mutant alleles such as sgr4/zig are defective in the shoots response to gravity resulting in a zigzag growth pattern of the stem. Involved in protein trafficking to lytic vacuoles. Can conditionally substitute VTI12 in protein storage vacuole trafficking when plants are devoid of VTI12.  go_component plant-type vacuole|GO:0000325|16618929|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component late endosome|GO:0005770|10397763|IDA  go_component late endosome|GO:0005770|11115874|TAS  go_component vacuolar membrane|GO:0005774|16618929|IDA  go_component trans-Golgi network|GO:0005802|10397763|IDA  go_component trans-Golgi network|GO:0005802|11115874|TAS  go_component trans-Golgi network transport vesicle|GO:0030140|11826297|IDA  go_process protein targeting to vacuole|GO:0006623|17360696|IMP  go_process Golgi to vacuole transport|GO:0006896|10397763|IGI  go_process gravitropism|GO:0009630|11826297|IMP  go_process gravitropism|GO:0009630|9210330|IMP  go_function receptor activity|GO:0004872|11115874|TAS  product SGR4 (SHOOT GRAVITROPSIM 4); receptor  note SHOOT GRAVITROPSIM 4 (SGR4); FUNCTIONS IN: receptor activity; INVOLVED IN: gravitropism, Golgi to vacuole transport, protein targeting to vacuole; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vesicle transport v-SNARE (InterPro:IPR007705); BEST Arabidopsis thaliana protein match is: VTI13; SNARE binding / receptor (TAIR:AT3G29100.1); Has 539 Blast hits to 537 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 241; Fungi - 95; Plants - 92; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).  protein_id AT5G39510.1p  transcript_id AT5G39510.1  protein_id AT5G39510.1p  transcript_id AT5G39510.1  
At5g39520	chr5:015825255	0.0	C/15825255-15825416,15825084-15825170,15824396-15824545,15824112-15824309,15823920-15824015	AT5G39520.1  CDS  gene_syn MUL8.22, MUL8_22  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39530.1); Has 121 Blast hits to 121 proteins in 44 species: Archae - 0; Bacteria - 67; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT5G39520.1p  transcript_id AT5G39520.1  protein_id AT5G39520.1p  transcript_id AT5G39520.1  
At5g39535	chr5:015827026	0.0	C/15827026-15827097	AT5G39535.1  tRNA  gene_syn 67744.TRNA-PRO-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: AGG)  transcript_id AT5G39535.1  
At5g39530	chr5:015827332	0.0	C/15827332-15827517,15827152-15827238,15826808-15826957,15826470-15826667,15826285-15826383	AT5G39530.1  CDS  gene_syn MUL8.23, MUL8_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39520.1); Has 172 Blast hits to 172 proteins in 54 species: Archae - 0; Bacteria - 88; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT5G39530.1p  transcript_id AT5G39530.1  protein_id AT5G39530.1p  transcript_id AT5G39530.1  
At5g39532	chr5:015830985	0.0	C/15830985-15831271	AT5G39532.1  pseudogenic_transcript  pseudo  function Pseudogene of AT3G59455  
At5g39533	chr5:015831990	0.0	C/15831990-15833439	AT5G39533.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.1e-41 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At5g39540	chr5:015834136	0.0	C/15834136-15834420,15833743-15834048	AT5G39540.1  CDS  gene_syn MIJ24.2, MIJ24_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated type 3 (InterPro:IPR013187); BEST Arabidopsis thaliana protein match is: anac063 (Arabidopsis NAC domain containing protein 63); transcription factor (TAIR:AT3G55210.1); Has 64 Blast hits to 64 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G39540.1p  transcript_id AT5G39540.1  protein_id AT5G39540.1p  transcript_id AT5G39540.1  
At5g39550	chr5:015840081	0.0	C/15840081-15840503,15838967-15839502,15838746-15838871,15838516-15838615,15838361-15838425,15838171-15838273,15837963-15838083,15837668-15837882,15837408-15837572	AT5G39550.1  CDS  gene_syn MIJ24.3, MIJ24_3, ORTH1, ORTHRUS 1, VARIANT IN METHYLATION 3, VIM3  gene VIM3  function Encodes the VIM3/ORTH1 protein that is similar to VIM1. This protein has an N-terminal PHD domain and two RING domains surrounding an SRA domain. The protein has been shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the former. This protein functions as an E3 ubiquitin ligase in vitro with members of the UBC8 family E2s. Either of the two RING domains present in the protein can promote ubiquitylation in vitro, but, not the PHD domain. Over-expression of ORTH1/VIM3 leads to decreased levels of FWA methylation, increased levels of FWA transcripts, and delayed flowering. Cen180 repeats are also hypomethylated in plants overexpressing this protein.  go_component nucleus|GO:0005634|18643997|IDA  go_process vegetative to reproductive phase transition|GO:0010228|18643997|IMP  go_process protein ubiquitination|GO:0016567|18643997|IDA  go_process DNA methylation on cytosine|GO:0032776|17242155|IMP  go_process DNA methylation on cytosine|GO:0032776|18643997|IMP  go_function ubiquitin-protein ligase activity|GO:0004842|18643997|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  go_function methyl-CpG binding|GO:0008327|17239600|IDA  go_function methyl-CpNpG binding|GO:0010428|17239600|IDA  go_function methyl-CpNpN binding|GO:0010429|17239600|IDA  product VIM3 (VARIANT IN METHYLATION 3); methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding / protein binding / ubiquitin-protein ligase/ zinc ion binding  note VARIANT IN METHYLATION 3 (VIM3); FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA methylation on cytosine, protein ubiquitination, vegetative to reproductive phase transition; LOCATED IN: nucleus; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), SRA-YDG (InterPro:IPR003105), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: VIM2 (VARIANT IN METHYLATION 2); protein binding / ubiquitin-protein ligase/ zinc ion binding (TAIR:AT1G66050.1); Has 5155 Blast hits to 4160 proteins in 342 species: Archae - 0; Bacteria - 8; Metazoa - 4062; Fungi - 269; Plants - 464; Viruses - 17; Other Eukaryotes - 335 (source: NCBI BLink).  protein_id AT5G39550.1p  transcript_id AT5G39550.1  protein_id AT5G39550.1p  transcript_id AT5G39550.1  
At5g39560	chr5:015841885	0.0	C/15841885-15843096	AT5G39560.1  CDS  gene_syn MIJ24.5, MIJ24_5  go_component chloroplast|GO:0009507|18431481|IDA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: shoot, cauline leaf, stamen, leaf; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G19870.2); Has 2231 Blast hits to 1863 proteins in 132 species: Archae - 8; Bacteria - 107; Metazoa - 1341; Fungi - 6; Plants - 633; Viruses - 27; Other Eukaryotes - 109 (source: NCBI BLink).  protein_id AT5G39560.1p  transcript_id AT5G39560.1  protein_id AT5G39560.1p  transcript_id AT5G39560.1  
At5g39570	chr5:015844139	0.0	W/15844139-15845076,15845738-15845960	AT5G39570.1  CDS  gene_syn MIJ24.6, MIJ24_6  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G39570.1p  transcript_id AT5G39570.1  protein_id AT5G39570.1p  transcript_id AT5G39570.1  
At5g39580	chr5:015848638	0.0	C/15848638-15849027,15848006-15848172,15847531-15847684	AT5G39580.2  CDS  gene_syn MIJ24.50, MIJ24_50  go_component endomembrane system|GO:0012505||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process defense response to fungus|GO:0050832|17257167|IMP  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: defense response to fungus; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT5G64120.1); Has 2340 Blast hits to 2338 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 2332; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G39580.2p  transcript_id AT5G39580.2  protein_id AT5G39580.2p  transcript_id AT5G39580.2  
At5g39580	chr5:015848638	0.0	C/15848638-15849027,15848010-15848172,15847281-15847687	AT5G39580.1  CDS  gene_syn MIJ24.50, MIJ24_50  go_component endomembrane system|GO:0012505||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process defense response to fungus|GO:0050832|17257167|IMP  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: defense response to fungus, N-terminal protein myristoylation; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT5G64120.1); Has 2504 Blast hits to 2491 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 2490; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G39580.1p  transcript_id AT5G39580.1  protein_id AT5G39580.1p  transcript_id AT5G39580.1  
At5g39581	chr5:015849155	0.0	C/15849155-15849301	AT5G39581.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G39581.1p  transcript_id AT5G39581.1  protein_id AT5G39581.1p  transcript_id AT5G39581.1  
At5g39590	chr5:015851483	0.0	W/15851483-15851638,15851726-15852346,15852497-15852684,15852833-15853071,15853155-15853354,15853459-15853584,15853670-15853768	AT5G39590.1  CDS  gene_syn MIJ24.8, MIJ24_8  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TLDc (InterPro:IPR006571); Has 144 Blast hits to 144 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 76; Fungi - 9; Plants - 26; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT5G39590.1p  transcript_id AT5G39590.1  protein_id AT5G39590.1p  transcript_id AT5G39590.1  
At5g39600	chr5:015854415	0.0	C/15854415-15854771,15854188-15854214	AT5G39600.1  CDS  gene_syn MIJ24.9, MIJ24_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 25 Blast hits to 25 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G39600.1p  transcript_id AT5G39600.1  protein_id AT5G39600.1p  transcript_id AT5G39600.1  
At5g39610	chr5:015859452	0.0	C/15859452-15859650,15859064-15859341,15858591-15858971	AT5G39610.1  CDS  gene_syn ANAC092, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 2, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 6, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 92, ATNAC2, ATNAC6, MIJ24.11, MIJ24_11, ORE1, ORESARA 1  gene ATNAC6  function Encodes a NAC-domain transcription factor. Positively regulates aging-induced cell death and senescence in leaves. This gene is upregulated in response to salt stress in wildtype as well as NTHK1 transgenic lines although in the latter case the induction was drastically reduced. It was also upregulated by ABA, ACC and NAA treatment, although in the latter two cases, the induction occurred relatively late when compared with NaCl or ABA treatments. Note: this protein (AtNAC6) on occasion has also been referred to as AtNAC2, not to be confused with the AtNAC2 found at locus AT3G15510.  go_component nucleus|GO:0005634|16359384|IDA  go_process response to oxidative stress|GO:0006979|15295076|IMP  go_process multicellular organismal development|GO:0007275||ISS  go_process response to salt stress|GO:0009651|16359384|IEP  go_process response to ethylene stimulus|GO:0009723|16359384|IEP  go_process response to auxin stimulus|GO:0009733|16359384|IEP  go_process senescence|GO:0010149|9351240|IMP  go_process leaf senescence|GO:0010150|19229035|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|16359384|IPI  go_function protein homodimerization activity|GO:0042803|16359384|IPI  go_function protein heterodimerization activity|GO:0046982|16359384|IPI  product ATNAC6 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 6); protein heterodimerization/ protein homodimerization/ transcription factor  note ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 6 (ATNAC6); FUNCTIONS IN: transcription factor activity, protein heterodimerization activity, protein homodimerization activity; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ATNAC3 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 3); protein heterodimerization/ transcription factor (TAIR:AT3G29035.1); Has 1655 Blast hits to 1653 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1655; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G39610.1p  transcript_id AT5G39610.1  protein_id AT5G39610.1p  transcript_id AT5G39610.1  
At5g39620	chr5:015865739	0.0	C/15865739-15865782,15865620-15865646,15865397-15865496,15865178-15865324,15864915-15864995,15864683-15864831,15864166-15864232	AT5G39620.1  CDS  gene_syn Arabidopsis Rab GTPase homolog G1, AtRABG1, MIJ24.90, MIJ24_90  gene AtRABG1  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product AtRABG1 (Arabidopsis Rab GTPase homolog G1); GTP binding  note Arabidopsis Rab GTPase homolog G1 (AtRABG1); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: ATRAB7A; GTP binding (TAIR:AT2G21880.1); Has 20159 Blast hits to 20139 proteins in 613 species: Archae - 10; Bacteria - 123; Metazoa - 11162; Fungi - 2342; Plants - 1761; Viruses - 19; Other Eukaryotes - 4742 (source: NCBI BLink).  protein_id AT5G39620.1p  transcript_id AT5G39620.1  protein_id AT5G39620.1p  transcript_id AT5G39620.1  
At5g39630	chr5:015868262	0.0	W/15868262-15868355,15868689-15868747,15868816-15868992,15869079-15869249,15869592-15869714	AT5G39630.1  CDS  gene_syn MIJ24.100, MIJ24_100  go_component membrane|GO:0016020||IEA  go_process intra-Golgi vesicle-mediated transport|GO:0006891|11115874|TAS  go_process membrane fusion|GO:0006944|10831610|IPI  go_function SNARE binding|GO:0000149|11115874|TAS  go_function receptor activity|GO:0004872|11115874|TAS  product vesicle transport v-SNARE family protein  note vesicle transport v-SNARE family protein; FUNCTIONS IN: SNARE binding, receptor activity; INVOLVED IN: membrane fusion, intra-Golgi vesicle-mediated transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Vesicle transport v-SNARE (InterPro:IPR007705); BEST Arabidopsis thaliana protein match is: SGR4 (SHOOT GRAVITROPSIM 4); receptor (TAIR:AT5G39510.1); Has 1107 Blast hits to 912 proteins in 192 species: Archae - 19; Bacteria - 65; Metazoa - 340; Fungi - 130; Plants - 81; Viruses - 2; Other Eukaryotes - 470 (source: NCBI BLink).  protein_id AT5G39630.1p  transcript_id AT5G39630.1  protein_id AT5G39630.1p  transcript_id AT5G39630.1  
At5g39635	chr5:015870590	0.0	C/15870590-15871000	AT5G39635.1  miRNA  gene_syn MICRORNA169C, MIR169C  gene MIR169C  function Encodes a microRNA that targets several HAP2 family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: CAGCCAAGGAUGACUUGCCGG  product MIR169C (MICRORNA169C); miRNA  transcript_id AT5G39635.1  
At5g39640	chr5:015873039	0.0	C/15873039-15873269	AT5G39640.1  CDS  gene_syn MIJ24.14, MIJ24_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G20480.1); Has 63 Blast hits to 61 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G39640.1p  transcript_id AT5G39640.1  protein_id AT5G39640.1p  transcript_id AT5G39640.1  
At5g39645	chr5:015873623	0.0	C/15873623-15873680,15873392-15873519	AT5G39645.1  CDS  function Encodes a Defensin-like (DEFL) family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14276.1); Has 7 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G39645.1p  transcript_id AT5G39645.1  protein_id AT5G39645.1p  transcript_id AT5G39645.1  
At5g39650	chr5:015875265	0.0	W/15875265-15875999	AT5G39650.1  CDS  gene_syn MIJ24.15, MIJ24_15  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF679 (InterPro:IPR007770); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09157.1); Has 153 Blast hits to 146 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G39650.1p  transcript_id AT5G39650.1  protein_id AT5G39650.1p  transcript_id AT5G39650.1  
At5g39660	chr5:015878920	0.0	W/15878920-15879153,15879573-15880712	AT5G39660.1  CDS  gene_syn CDF2, CYCLING DOF FACTOR 2, MIJ24.16, MIJ24_16  gene CDF2  function Dof-type zinc finger domain-containing protein, identical to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Interacts with LKP2 and FKF1, but its overexpression does not change flowering time under short or long day conditions.  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|16002617|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  go_function protein binding|GO:0005515|16002617|IPI  product CDF2 (CYCLING DOF FACTOR 2); DNA binding / protein binding / transcription factor  note CYCLING DOF FACTOR 2 (CDF2); FUNCTIONS IN: protein binding, transcription factor activity, DNA binding; INVOLVED IN: regulation of timing of transition from vegetative to reproductive phase, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: CDF3 (CYCLING DOF FACTOR 3); DNA binding / protein binding / transcription factor (TAIR:AT3G47500.1); Has 681 Blast hits to 674 proteins in 62 species: Archae - 0; Bacteria - 6; Metazoa - 20; Fungi - 6; Plants - 628; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT5G39660.1p  transcript_id AT5G39660.1  protein_id AT5G39660.1p  transcript_id AT5G39660.1  
At5g39660	chr5:015878920	0.0	W/15878920-15879153,15879573-15880712	AT5G39660.2  CDS  gene_syn CDF2, CYCLING DOF FACTOR 2, MIJ24.16, MIJ24_16  gene CDF2  function Dof-type zinc finger domain-containing protein, identical to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Interacts with LKP2 and FKF1, but its overexpression does not change flowering time under short or long day conditions.  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|16002617|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  go_function protein binding|GO:0005515|16002617|IPI  product CDF2 (CYCLING DOF FACTOR 2); DNA binding / protein binding / transcription factor  note CYCLING DOF FACTOR 2 (CDF2); FUNCTIONS IN: protein binding, transcription factor activity, DNA binding; INVOLVED IN: regulation of timing of transition from vegetative to reproductive phase, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: CDF3 (CYCLING DOF FACTOR 3); DNA binding / protein binding / transcription factor (TAIR:AT3G47500.1); Has 681 Blast hits to 674 proteins in 62 species: Archae - 0; Bacteria - 6; Metazoa - 20; Fungi - 6; Plants - 628; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT5G39660.2p  transcript_id AT5G39660.2  protein_id AT5G39660.2p  transcript_id AT5G39660.2  
At5g39670	chr5:015883270	0.0	W/15883270-15883884	AT5G39670.1  CDS  gene_syn MIJ24.17, MIJ24_17  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT3G29000.1); Has 3905 Blast hits to 3859 proteins in 696 species: Archae - 0; Bacteria - 4; Metazoa - 1565; Fungi - 775; Plants - 1086; Viruses - 0; Other Eukaryotes - 475 (source: NCBI BLink).  protein_id AT5G39670.1p  transcript_id AT5G39670.1  protein_id AT5G39670.1p  transcript_id AT5G39670.1  
At5g39680	chr5:015884236	0.0	C/15884236-15886368	AT5G39680.1  CDS  gene_syn EMB2744, EMBRYO DEFECTIVE 2744, MIJ24.150, MIJ24_150  gene EMB2744  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product EMB2744 (EMBRYO DEFECTIVE 2744)  note EMBRYO DEFECTIVE 2744 (EMB2744); INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 13622 Blast hits to 4779 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 37; Fungi - 18; Plants - 13386; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink).  protein_id AT5G39680.1p  transcript_id AT5G39680.1  protein_id AT5G39680.1p  transcript_id AT5G39680.1  
At5g39690	chr5:015888171	0.0	W/15888171-15888194,15888415-15888504,15889339-15889630,15889709-15890187	AT5G39690.1  CDS  gene_syn ANAC093, Arabidopsis NAC domain containing protein 93, MIJ24.19, MIJ24_19  gene ANAC093  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ANAC093 (Arabidopsis NAC domain containing protein 93); transcription factor  note Arabidopsis NAC domain containing protein 93 (ANAC093); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac063 (Arabidopsis NAC domain containing protein 63); transcription factor (TAIR:AT3G55210.1); Has 799 Blast hits to 799 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 6; Plants - 787; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G39690.1p  transcript_id AT5G39690.1  protein_id AT5G39690.1p  transcript_id AT5G39690.1  
At5g39693	chr5:015891579	0.0	C/15891579-15891873	AT5G39693.1  miRNA  gene_syn MICRORNA869A, MIR869A  gene MIR869A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCUGGUGUUGAGAUAGUUGAC  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR869A (MICRORNA869A); miRNA  transcript_id AT5G39693.1  
At5g39700	chr5:015894154	0.0	C/15894154-15894424,15893761-15894062	AT5G39700.1  CDS  gene_syn AtMYB89, MIJ24.170, MIJ24_170, MYB89, myb domain protein 89  gene MYB89  function Encodes a putative transcription factor (MYB89).  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_function DNA binding|GO:0003677|9839469|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9839469|ISS  product MYB89 (myb domain protein 89); DNA binding / transcription factor  note myb domain protein 89 (MYB89); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB110 (myb domain protein 110); DNA binding / transcription factor (TAIR:AT3G29020.1); Has 5889 Blast hits to 5268 proteins in 355 species: Archae - 0; Bacteria - 0; Metazoa - 691; Fungi - 332; Plants - 3157; Viruses - 5; Other Eukaryotes - 1704 (source: NCBI BLink).  protein_id AT5G39700.1p  transcript_id AT5G39700.1  protein_id AT5G39700.1p  transcript_id AT5G39700.1  
At5g39710	chr5:015895729	0.0	W/15895729-15897972	AT5G39710.1  CDS  gene_syn EMB2745, EMBRYO DEFECTIVE 2745, MIJ24.190, MIJ24_190  gene EMB2745  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product EMB2745 (EMBRYO DEFECTIVE 2745)  note EMBRYO DEFECTIVE 2745 (EMB2745); INVOLVED IN: embryonic development ending in seed dormancy; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G55840.1); Has 27982 Blast hits to 6406 proteins in 199 species: Archae - 6; Bacteria - 43; Metazoa - 1267; Fungi - 890; Plants - 24129; Viruses - 0; Other Eukaryotes - 1647 (source: NCBI BLink).  protein_id AT5G39710.1p  transcript_id AT5G39710.1  protein_id AT5G39710.1p  transcript_id AT5G39710.1  
At5g39720	chr5:015899673	0.0	W/15899673-15899797,15899887-15899959,15900056-15900148,15900225-15900308,15900395-15900517	AT5G39720.1  CDS  gene_syn AIG2L, AVIRULENCE INDUCED GENE 2 LIKE PROTEIN, MKM21.1  gene AIG2L  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product AIG2L (AVIRULENCE INDUCED GENE 2 LIKE PROTEIN)  note AVIRULENCE INDUCED GENE 2 LIKE PROTEIN (AIG2L); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Butirosin biosynthesis, BtrG-like (InterPro:IPR013024), AIG2-like (InterPro:IPR009288); BEST Arabidopsis thaliana protein match is: avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related (TAIR:AT5G39730.1); Has 199 Blast hits to 199 proteins in 60 species: Archae - 6; Bacteria - 48; Metazoa - 0; Fungi - 41; Plants - 61; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT5G39720.1p  transcript_id AT5G39720.1  protein_id AT5G39720.1p  transcript_id AT5G39720.1  
At5g39730	chr5:015901740	0.0	W/15901740-15901864,15901965-15902037,15902134-15902226,15902307-15902390,15902481-15902624	AT5G39730.1  CDS  gene_syn MKM21.20, MKM21_20  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function molecular_function|GO:0003674||ND  product avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related  note avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AIG2-like (InterPro:IPR009288); BEST Arabidopsis thaliana protein match is: AIG2L (AVIRULENCE INDUCED GENE 2 LIKE PROTEIN) (TAIR:AT5G39720.1); Has 203 Blast hits to 203 proteins in 59 species: Archae - 6; Bacteria - 46; Metazoa - 0; Fungi - 39; Plants - 61; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT5G39730.1p  transcript_id AT5G39730.1  protein_id AT5G39730.1p  transcript_id AT5G39730.1  
At5g39740	chr5:015903365	0.0	W/15903365-15903367,15903779-15903848,15903960-15904178,15904267-15904346,15904439-15904555,15904672-15904976,15905074-15905185	AT5G39740.1  CDS  gene_syn MKM21.30, MKM21_30, OLI7, OLIGOCELLULA 7, RIBOSOMAL PROTEIN L5 B, RPL5B  gene RPL5B  go_component nucleolus|GO:0005730|15496452|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_function 5S rRNA binding|GO:0008097||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L5 (RPL5B)  note 60S ribosomal protein L5 (RPL5B); FUNCTIONS IN: structural constituent of ribosome, 5S rRNA binding; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L5, eukaryotic (InterPro:IPR005485), Ribosomal protein L18/L5 (InterPro:IPR005484); BEST Arabidopsis thaliana protein match is: ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5); 5S rRNA binding / structural constituent of ribosome (TAIR:AT3G25520.1); Has 941 Blast hits to 940 proteins in 333 species: Archae - 245; Bacteria - 6; Metazoa - 326; Fungi - 108; Plants - 79; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).  protein_id AT5G39740.1p  transcript_id AT5G39740.1  protein_id AT5G39740.1p  transcript_id AT5G39740.1  
At5g39750	chr5:015906875	0.0	W/15906875-15907942	AT5G39750.1  CDS  gene_syn AGAMOUS-LIKE 81, AGL81, EMB3008, EMBRYO DEFECTIVE 3008, MKM21.6, MKM21_6  gene AGL81  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL81 (AGAMOUS-LIKE 81); transcription factor  note AGAMOUS-LIKE 81 (AGL81); FUNCTIONS IN: transcription factor activity; INVOLVED IN: embryonic development ending in seed dormancy, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL98 (AGAMOUS-LIKE 98); transcription factor (TAIR:AT5G39810.1); Has 418 Blast hits to 415 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 385; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT5G39750.1p  transcript_id AT5G39750.1  protein_id AT5G39750.1p  transcript_id AT5G39750.1  
At5g39760	chr5:015911543	0.0	W/15911543-15912547	AT5G39760.1  CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23, AtHB23, MKM21.8, MKM21_8  gene AtHB23  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677|11289511|ISS  go_function transcription factor activity|GO:0003700||ISS  product AtHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23); DNA binding / transcription factor  note ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23 (AtHB23); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein Cys/His-rich dimerisation region (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: AtHB34 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 34); DNA binding / transcription factor (TAIR:AT3G28920.1); Has 3938 Blast hits to 2542 proteins in 262 species: Archae - 0; Bacteria - 158; Metazoa - 1294; Fungi - 339; Plants - 1322; Viruses - 210; Other Eukaryotes - 615 (source: NCBI BLink).  protein_id AT5G39760.1p  transcript_id AT5G39760.1  protein_id AT5G39760.1p  transcript_id AT5G39760.1  
At5g39770	chr5:015927443	0.0	C/15927443-15927549,15927125-15927361,15926727-15926763,15926597-15926641,15926442-15926483,15926199-15926312,15925944-15926066,15925728-15925856,15925546-15925592,15925366-15925448,15925051-15925131,15924831-15924961,15924217-15924442,15923955-15924034,15923738-15923830,15923401-15923598,15922994-15923258,15922858-15922908,15922594-15922752,15922223-15922364,15921682-15921776,15921513-15921593,15921345-15921429,15921129-15921251,15920996-15921036,15920879-15920941,15920683-15920798,15920451-15920581,15920081-15920198,15919912-15919991,15919467-15919818,15919241-15919384	AT5G39770.1  CDS  gene_syn MKM21.10, MKM21_10  function Represents a non-function pseudogene homologous to AtMSU81 (At4g30870).  go_process DNA metabolic process|GO:0006259||IEA  go_function DNA binding|GO:0003677||IEA  go_function nuclease activity|GO:0004518||IEA  go_function protein binding|GO:0005515||IEA  go_process DNA repair|GO:0006281||ISS  go_function nucleic acid binding|GO:0003676||ISS  go_function endonuclease activity|GO:0004519||ISS  product DNA binding / endonuclease/ nuclease/ nucleic acid binding / protein binding  note DNA binding / endonuclease/ nuclease/ nucleic acid binding / protein binding; FUNCTIONS IN: protein binding, DNA binding, nucleic acid binding, endonuclease activity, nuclease activity; INVOLVED IN: DNA repair, DNA metabolic process; CONTAINS InterPro DOMAIN/s: DNA repair nuclease, XPF-type/Helicase (InterPro:IPR006166), Restriction endonuclease, type II-like, core (InterPro:IPR011335); BEST Arabidopsis thaliana protein match is: MUS81 (MMS AND UV SENSITIVE 81); endonuclease/ nucleic acid binding (TAIR:AT4G30870.1); Has 393 Blast hits to 353 proteins in 135 species: Archae - 0; Bacteria - 12; Metazoa - 129; Fungi - 87; Plants - 24; Viruses - 0; Other Eukaryotes - 141 (source: NCBI BLink).  protein_id AT5G39770.1p  transcript_id AT5G39770.1  protein_id AT5G39770.1p  transcript_id AT5G39770.1  
At5g39785	chr5:015929257	0.0	W/15929257-15930139,15931079-15931498,15931623-15931879,15931955-15932215	AT5G39785.1  CDS  gene_syn AT5G39780  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  product structural constituent of ribosome  note structural constituent of ribosome; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e (InterPro:IPR008195), Protein of unknown function DUF1666 (InterPro:IPR012870); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT1G69610.1); Has 450 Blast hits to 406 proteins in 85 species: Archae - 0; Bacteria - 12; Metazoa - 66; Fungi - 55; Plants - 52; Viruses - 4; Other Eukaryotes - 261 (source: NCBI BLink).  protein_id AT5G39785.1p  transcript_id AT5G39785.1  protein_id AT5G39785.1p  transcript_id AT5G39785.1  
At5g39785	chr5:015929257	0.0	W/15929257-15930139,15931079-15931498,15931623-15931885,15931958-15932215	AT5G39785.2  CDS  gene_syn AT5G39780  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  product structural constituent of ribosome  note structural constituent of ribosome; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e (InterPro:IPR008195), Protein of unknown function DUF1666 (InterPro:IPR012870); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT1G69610.1); Has 391 Blast hits to 361 proteins in 78 species: Archae - 0; Bacteria - 12; Metazoa - 50; Fungi - 48; Plants - 52; Viruses - 4; Other Eukaryotes - 225 (source: NCBI BLink).  protein_id AT5G39785.2p  transcript_id AT5G39785.2  protein_id AT5G39785.2p  transcript_id AT5G39785.2  
At5g39790	chr5:015935118	0.0	C/15935118-15935121,15934890-15934923,15934536-15934761,15934341-15934430,15933809-15933865,15933476-15933581,15933292-15933380,15933085-15933197,15932884-15932986	AT5G39790.1  CDS  gene_syn MKM21.80, MKM21_80  function Encodes a chloroplast localized protein with starch binding activity that may be involved in carbohydrate metabolism.  go_component chloroplast|GO:0009507|19038037|IDA  go_function polysaccharide binding|GO:0030247|19038037|IDA  product 5 -AMP-activated protein kinase beta-1 subunit-related  note 5 -AMP-activated protein kinase beta-1 subunit-related; FUNCTIONS IN: polysaccharide binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G03420.1); Has 149 Blast hits to 149 proteins in 55 species: Archae - 0; Bacteria - 12; Metazoa - 31; Fungi - 36; Plants - 52; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT5G39790.1p  transcript_id AT5G39790.1  protein_id AT5G39790.1p  transcript_id AT5G39790.1  
At5g39800	chr5:015935580	0.0	W/15935580-15935730,15936518-15936582,15936868-15936936	AT5G39800.1  CDS  gene_syn MKM21.12, MKM21_12  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product 60S ribosomal protein-related  note 60S ribosomal protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: 60S ribosomal protein-related (TAIR:AT5G40080.1); Has 141 Blast hits to 141 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 78; Fungi - 25; Plants - 25; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT5G39800.1p  transcript_id AT5G39800.1  protein_id AT5G39800.1p  transcript_id AT5G39800.1  
At5g39810	chr5:015937985	0.0	C/15937985-15938344,15937278-15937907	AT5G39810.1  CDS  gene_syn AGAMOUS-LIKE 98, AGL98, MKM21.13, MKM21_13  gene AGL98  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL98 (AGAMOUS-LIKE 98); transcription factor  note AGAMOUS-LIKE 98 (AGL98); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL81 (AGAMOUS-LIKE 81); transcription factor (TAIR:AT5G39750.1); Has 384 Blast hits to 381 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 311; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT5G39810.1p  transcript_id AT5G39810.1  protein_id AT5G39810.1p  transcript_id AT5G39810.1  
At5g39820	chr5:015940293	0.0	C/15940293-15940491,15939863-15940194,15939300-15939773	AT5G39820.1  CDS  gene_syn Arabidopsis NAC domain containing protein 94, MKM21.110, MKM21_110, anac094  gene anac094  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac094 (Arabidopsis NAC domain containing protein 94); transcription factor  note Arabidopsis NAC domain containing protein 94 (anac094); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: FEZ (FEZ); transcription factor (TAIR:AT1G26870.1); Has 1667 Blast hits to 1660 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 0; Plants - 1591; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT5G39820.1p  transcript_id AT5G39820.1  protein_id AT5G39820.1p  transcript_id AT5G39820.1  
At5g39830	chr5:015942883	0.0	W/15942883-15943016,15943295-15943422,15943722-15943807,15943891-15943989,15944079-15944145,15944243-15944318,15944412-15944478,15944556-15944773,15944868-15944935,15945002-15945081,15945162-15945248,15945347-15945454,15945548-15945676	AT5G39830.1  CDS  gene_syn DEG PROTEASE 8, DEG8, DEGP8, K13H13.1, K13H13_1  gene DEG8  function Encodes DEG8. Forms a hexamer with DEG5 in the thylakoid lumen. Involved in the cleavage of photodamaged D2 protein of photosystem II (PSII). Recombinant DEG8 is proteolytically active toward both a model substrate (beta-casein) and photodamaged D1 protein of photosystem II.  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|17449806|IDA  go_process proteolysis|GO:0006508|17449806|IDA  go_process proteolysis|GO:0006508||ISS  go_process photosystem II repair|GO:0010206|17449806|IMP  go_function peptidase activity|GO:0008233|17449806|IDA  go_function serine-type peptidase activity|GO:0008236||ISS  product DEG8; peptidase/ serine-type peptidase  note DEG8; FUNCTIONS IN: serine-type peptidase activity, peptidase activity; INVOLVED IN: photosystem II repair, proteolysis; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase, trypsin-like serine and cysteine (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1 and S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DEGP1 (DegP protease 1); serine-type endopeptidase/ serine-type peptidase (TAIR:AT3G27925.1); Has 11008 Blast hits to 11005 proteins in 1429 species: Archae - 52; Bacteria - 5951; Metazoa - 266; Fungi - 104; Plants - 176; Viruses - 8; Other Eukaryotes - 4451 (source: NCBI BLink).  protein_id AT5G39830.1p  transcript_id AT5G39830.1  protein_id AT5G39830.1p  transcript_id AT5G39830.1  
At5g39830	chr5:015942883	0.0	W/15942883-15943016,15943295-15943422,15943722-15943807,15943891-15943989,15944079-15944145,15944243-15944318,15944412-15944478,15944556-15944773,15944868-15944935,15945044-15945081,15945162-15945248,15945347-15945454,15945548-15945676	AT5G39830.2  CDS  gene_syn DEG PROTEASE 8, DEG8, DEGP8, K13H13.1, K13H13_1  gene DEG8  function Encodes DEG8. Forms a hexamer with DEG5 in the thylakoid lumen. Involved in the cleavage of photodamaged D2 protein of photosystem II (PSII). Recombinant DEG8 is proteolytically active toward both a model substrate (beta-casein) and photodamaged D1 protein of photosystem II.  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|17449806|IDA  go_process proteolysis|GO:0006508|17449806|IDA  go_process proteolysis|GO:0006508||ISS  go_process photosystem II repair|GO:0010206|17449806|IMP  go_function peptidase activity|GO:0008233|17449806|IDA  go_function serine-type peptidase activity|GO:0008236||ISS  product DEG8; peptidase/ serine-type peptidase  note DEG8; FUNCTIONS IN: serine-type peptidase activity, peptidase activity; INVOLVED IN: photosystem II repair, proteolysis; LOCATED IN: thylakoid, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase, trypsin-like serine and cysteine (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1 and S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DEGP1 (DegP protease 1); serine-type endopeptidase/ serine-type peptidase (TAIR:AT3G27925.1); Has 10753 Blast hits to 10748 proteins in 1415 species: Archae - 52; Bacteria - 5873; Metazoa - 258; Fungi - 93; Plants - 184; Viruses - 6; Other Eukaryotes - 4287 (source: NCBI BLink).  protein_id AT5G39830.2p  transcript_id AT5G39830.2  protein_id AT5G39830.2p  transcript_id AT5G39830.2  
At5g39840	chr5:015946769	0.0	W/15946769-15949074,15949162-15949186	AT5G39840.1  CDS  gene_syn K13H13.20, K13H13_20  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_component mitochondrion|GO:0005739||ISS  go_process biological_process|GO:0008150||ND  go_function ATP-dependent RNA helicase activity|GO:0004004||ISS  product ATP-dependent RNA helicase, mitochondrial, putative  note ATP-dependent RNA helicase, mitochondrial, putative; FUNCTIONS IN: helicase activity, ATP-dependent RNA helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATSUV3; ATP-dependent RNA helicase (TAIR:AT4G14790.1); Has 3103 Blast hits to 3082 proteins in 433 species: Archae - 27; Bacteria - 582; Metazoa - 237; Fungi - 253; Plants - 68; Viruses - 15; Other Eukaryotes - 1921 (source: NCBI BLink).  protein_id AT5G39840.1p  transcript_id AT5G39840.1  protein_id AT5G39840.1p  transcript_id AT5G39840.1  
At5g39850	chr5:015950053	0.0	W/15950053-15950080,15950407-15950788,15950988-15951171	AT5G39850.1  CDS  gene_syn MYH19.10, MYH19_10  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S9 (RPS9C)  note 40S ribosomal protein S9 (RPS9C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S4 (InterPro:IPR001912), Ribosomal protein S4, conserved site (InterPro:IPR018079), Ribosomal protein S4/S9, eukaryotic/archaeal (InterPro:IPR005710), RNA-binding S4 (InterPro:IPR002942); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S9 (RPS9B) (TAIR:AT5G15200.1); Has 5400 Blast hits to 5397 proteins in 2680 species: Archae - 171; Bacteria - 348; Metazoa - 335; Fungi - 191; Plants - 3457; Viruses - 0; Other Eukaryotes - 898 (source: NCBI BLink).  protein_id AT5G39850.1p  transcript_id AT5G39850.1  protein_id AT5G39850.1p  transcript_id AT5G39850.1  
At5g39860	chr5:015957689	0.0	W/15957689-15957814,15958151-15958303	AT5G39860.1  CDS  gene_syn MYH19.1, MYH19_1, PACLOBUTRAZOL RESISTANCE1, PRE1  gene PRE1  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product PRE1 (PACLOBUTRAZOL RESISTANCE1); DNA binding / transcription factor  note PACLOBUTRAZOL RESISTANCE1 (PRE1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092); BEST Arabidopsis thaliana protein match is: transcription regulator (TAIR:AT3G28857.1); Has 72 Blast hits to 72 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G39860.1p  transcript_id AT5G39860.1  protein_id AT5G39860.1p  transcript_id AT5G39860.1  
At5g39861	chr5:015960354	0.0	C/15960354-15961397	AT5G39861.1  pseudogenic_transcript  pseudo  note pseudogene, similar to receptor kinase 5, blastp match of 69% identity and 5.6e-67 P-value to GP|16040952|dbj|BAB69683.1||AB041621 receptor kinase 5 {Brassica rapa}  
At5g39862	chr5:015961511	0.0	W/15961511-15964681	AT5G39862.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 4.3e-43 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At5g39863	chr5:015964721	0.0	C/15964721-15965170	AT5G39863.1  pseudogenic_transcript  pseudo  note pseudogene, similar to receptor-like kinase, blastp match of 65% identity and 4.1e-20 P-value to GP|1783312|emb|CAA67145.1||X98520 receptor-like kinase {Brassica oleracea}  
At5g39865	chr5:015965560	0.0	C/15965560-15966732	AT5G39865.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  product glutaredoxin family protein  note glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: N-terminal protein myristoylation, cell redox homeostasis; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin family protein (TAIR:AT3G28850.1); Has 539 Blast hits to 526 proteins in 83 species: Archae - 0; Bacteria - 42; Metazoa - 97; Fungi - 10; Plants - 215; Viruses - 0; Other Eukaryotes - 175 (source: NCBI BLink).  protein_id AT5G39865.1p  transcript_id AT5G39865.1  protein_id AT5G39865.1p  transcript_id AT5G39865.1  
At5g39870	chr5:015969646	0.0	C/15969646-15970011,15968850-15969315,15968622-15968662	AT5G39870.1  CDS  gene_syn MYH19.6, MYH19_6  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: petal, male gametophyte, flower, cultured cell; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1216 (InterPro:IPR009605); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28980.1); Has 84 Blast hits to 62 proteins in 16 species: Archae - 2; Bacteria - 5; Metazoa - 3; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT5G39870.1p  transcript_id AT5G39870.1  protein_id AT5G39870.1p  transcript_id AT5G39870.1  
At5g39880	chr5:015970965	0.0	W/15970965-15972056	AT5G39880.1  CDS  gene_syn MYH19.7, MYH19_7  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28750.1); Has 13 Blast hits to 13 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G39880.1p  transcript_id AT5G39880.1  protein_id AT5G39880.1p  transcript_id AT5G39880.1  
At5g39890	chr5:015974543	0.0	W/15974543-15974780,15974868-15974986,15975077-15975206,15975328-15975546,15975889-15976013	AT5G39890.1  CDS  gene_syn MYH19.8, MYH19_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1637 (InterPro:IPR012864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G15120.1); Has 238 Blast hits to 238 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 84; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT5G39890.1p  transcript_id AT5G39890.1  protein_id AT5G39890.1p  transcript_id AT5G39890.1  
At5g39895	chr5:015976287	0.0	W/15976287-15976359	AT5G39895.1  tRNA  gene_syn 67748.TRNA-ALA-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: AGC)  transcript_id AT5G39895.1  
At5g39900	chr5:015978605	0.0	C/15978605-15978925,15977736-15978468,15976719-15977656	AT5G39900.1  CDS  gene_syn MYH19.60, MYH19_60  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function translation elongation factor activity|GO:0003746||ISS  go_function GTP binding|GO:0005525||ISS  product GTP binding / GTPase/ translation elongation factor  note GTP binding / GTPase/ translation elongation factor; FUNCTIONS IN: GTP binding, translation elongation factor activity, GTPase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding protein LepA (InterPro:IPR006297), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), GTP-binding protein LepA, C-terminal (InterPro:IPR013842), Elongation factor G, III and V (InterPro:IPR009022), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: GTP-binding protein LepA, putative (TAIR:AT5G08650.1); Has 54134 Blast hits to 51179 proteins in 7491 species: Archae - 768; Bacteria - 24430; Metazoa - 6552; Fungi - 4465; Plants - 812; Viruses - 0; Other Eukaryotes - 17107 (source: NCBI BLink).  protein_id AT5G39900.1p  transcript_id AT5G39900.1  protein_id AT5G39900.1p  transcript_id AT5G39900.1  
At5g39910	chr5:015981513	0.0	C/15981513-15981671,15981273-15981410,15980948-15981070,15980776-15980796,15980486-15980693,15980303-15980384,15980100-15980208,15979412-15979693	AT5G39910.1  CDS  gene_syn MYH19.70, MYH19_70  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626), Glycoside hydrolase, family 28 (InterPro:IPR000743); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT3G15720.1); Has 2285 Blast hits to 2279 proteins in 288 species: Archae - 2; Bacteria - 367; Metazoa - 7; Fungi - 983; Plants - 860; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT5G39910.1p  transcript_id AT5G39910.1  protein_id AT5G39910.1p  transcript_id AT5G39910.1  
At5g39920	chr5:015982993	0.0	C/15982993-15983083,15982800-15982899,15982173-15982305	AT5G39920.1  CDS  gene_syn MYH19.80, MYH19_80  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pre-mRNA cleavage complex II Clp1 (InterPro:IPR010655); BEST Arabidopsis thaliana protein match is: CLPS5 (CLP1-SIMILAR PROTEIN 5) (TAIR:AT5G39930.1); Has 8 Blast hits to 8 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G39920.1p  transcript_id AT5G39920.1  protein_id AT5G39920.1p  transcript_id AT5G39920.1  
At5g39930	chr5:015987067	0.0	C/15987067-15987240,15986849-15986917,15986687-15986779,15986369-15986613,15986162-15986300,15986009-15986065,15985787-15985924,15985474-15985700,15985249-15985381	AT5G39930.1  CDS  gene_syn CLP1-SIMILAR PROTEIN 5, CLPS5, MYH19.90, MYH19_90  gene CLPS5  function Encodes a protein with similarity to the CLP1 polyadenylation factor.  product CLPS5 (CLP1-SIMILAR PROTEIN 5)  note CLP1-SIMILAR PROTEIN 5 (CLPS5); EXPRESSED IN: sperm cell, pollen tube; CONTAINS InterPro DOMAIN/s: Pre-mRNA cleavage complex II Clp1 (InterPro:IPR010655); BEST Arabidopsis thaliana protein match is: CLPS3 (CLP-SIMILAR PROTEIN 3); binding (TAIR:AT3G04680.2); Has 447 Blast hits to 445 proteins in 172 species: Archae - 57; Bacteria - 6; Metazoa - 137; Fungi - 111; Plants - 39; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).  protein_id AT5G39930.1p  transcript_id AT5G39930.1  protein_id AT5G39930.1p  transcript_id AT5G39930.1  
At5g39940	chr5:015987649	0.0	W/15987649-15987762,15987849-15987983,15988069-15988128,15988279-15988392,15988473-15988560,15988649-15988794,15988894-15988995,15989083-15989154,15989248-15989347,15989430-15989512,15989598-15989675,15989767-15989865,15989958-15990008,15990095-15990151,15990313-15990354,15990460-15990561	AT5G39940.1  CDS  gene_syn MYH19.13, MYH19_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HI0933-like protein (InterPro:IPR004792); Has 2776 Blast hits to 2776 proteins in 871 species: Archae - 18; Bacteria - 1933; Metazoa - 0; Fungi - 2; Plants - 19; Viruses - 0; Other Eukaryotes - 804 (source: NCBI BLink).  protein_id AT5G39940.1p  transcript_id AT5G39940.1  protein_id AT5G39940.1p  transcript_id AT5G39940.1  
At5g39950	chr5:015991735	0.0	C/15991735-15991881,15991526-15991648,15990885-15991016	AT5G39950.1  CDS  gene_syn ATH2, ATTRX2, ATTRXH2, Arabidopsis thioredoxin h2, MYH19.110, MYH19_110, THIOREDOXIN, THIOREDOXIN 2, THIOREDOXIN H2, TRXH2  gene ATTRX2  function encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytosol|GO:0005829|7777559|TAS  go_process sulfate assimilation|GO:0000103|10906327|IGI  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor|GO:0016671|7777559|IDA  product ATTRX2 (THIOREDOXIN 2); oxidoreductase, acting on sulfur group of donors, disulfide as acceptor  note THIOREDOXIN 2 (ATTRX2); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: N-terminal protein myristoylation, sulfate assimilation; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATH8 (thioredoxin H-type 8) (TAIR:AT1G69880.1); Has 12965 Blast hits to 12868 proteins in 1701 species: Archae - 154; Bacteria - 5824; Metazoa - 1592; Fungi - 606; Plants - 1062; Viruses - 8; Other Eukaryotes - 3719 (source: NCBI BLink).  protein_id AT5G39950.1p  transcript_id AT5G39950.1  protein_id AT5G39950.1p  transcript_id AT5G39950.1  
At5g39955	chr5:015992434	0.0	C/15992434-15992928	AT5G39955.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 4.7e-26 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At5g39960	chr5:015994195	0.0	W/15994195-15994336,15994417-15994681,15994780-15994989,15995081-15995328,15995403-15995629,15995760-15995885,15996002-15996187,15996282-15996419,15996512-15996820	AT5G39960.1  CDS  gene_syn MYH19.120, MYH19_120  go_component intracellular|GO:0005622||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product GTP-binding family protein  note GTP-binding family protein; FUNCTIONS IN: GTP binding; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding (InterPro:IPR005289), Small GTP-binding protein (InterPro:IPR005225), GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: emb2738 (embryo defective 2738); GTP binding (TAIR:AT3G12080.1); Has 17110 Blast hits to 14670 proteins in 1645 species: Archae - 110; Bacteria - 10960; Metazoa - 257; Fungi - 146; Plants - 115; Viruses - 0; Other Eukaryotes - 5522 (source: NCBI BLink).  protein_id AT5G39960.1p  transcript_id AT5G39960.1  protein_id AT5G39960.1p  transcript_id AT5G39960.1  
At5g39970	chr5:015998155	0.0	W/15998155-15998248,15998343-15998497,15998617-15999382,15999457-15999672,15999747-15999925,16000005-16000252,16000337-16000751	AT5G39970.1  CDS  gene_syn MYH19.17, MYH19_17  go_function catalytic activity|GO:0003824||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  product catalytic  note catalytic; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Soluble quinoprotein glucose dehydrogenase (InterPro:IPR011041), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: catalytic (TAIR:AT1G74790.1); Has 2719 Blast hits to 2715 proteins in 501 species: Archae - 32; Bacteria - 1104; Metazoa - 120; Fungi - 4; Plants - 249; Viruses - 0; Other Eukaryotes - 1210 (source: NCBI BLink).  protein_id AT5G39970.1p  transcript_id AT5G39970.1  protein_id AT5G39970.1p  transcript_id AT5G39970.1  
At5g39980	chr5:016001036	0.0	C/16001036-16003072	AT5G39980.1  CDS  gene_syn MYH19.18, MYH19_18  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62930.1); Has 20373 Blast hits to 6016 proteins in 191 species: Archae - 6; Bacteria - 28; Metazoa - 670; Fungi - 438; Plants - 18119; Viruses - 0; Other Eukaryotes - 1112 (source: NCBI BLink).  protein_id AT5G39980.1p  transcript_id AT5G39980.1  protein_id AT5G39980.1p  transcript_id AT5G39980.1  
At5g39990	chr5:016004494	0.0	W/16004494-16005130,16005216-16005291,16005389-16005504,16005914-16006428	AT5G39990.1  CDS  gene_syn MYH19.150, MYH19_150  go_component membrane|GO:0016020||IEA  go_function acetylglucosaminyltransferase activity|GO:0008375||IEA  go_component membrane|GO:0016020||ISS  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function acetylglucosaminyltransferase activity|GO:0008375||ISS  product glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein  note glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein; FUNCTIONS IN: acetylglucosaminyltransferase activity; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 14 (InterPro:IPR003406); BEST Arabidopsis thaliana protein match is: glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein (TAIR:AT5G15050.1); Has 717 Blast hits to 714 proteins in 89 species: Archae - 0; Bacteria - 16; Metazoa - 483; Fungi - 0; Plants - 190; Viruses - 14; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT5G39990.1p  transcript_id AT5G39990.1  protein_id AT5G39990.1p  transcript_id AT5G39990.1  
At5g39995	chr5:016008538	0.0	W/16008538-16009596	AT5G39995.1  pseudogenic_transcript  pseudo  note pseudogene, similar to putative Myb/Myb-related protein, blastp match of 52% identity and 1.4e-24 P-value to GP|21321780|gb|AAM47303.1|AF377946_5|AF377946 putative Myb/Myb-related protein {Oryza sativa (japonica cultivar-group)}  
At5g40000	chr5:016011072	0.0	C/16011072-16012484	AT5G40000.1  CDS  gene_syn MYH19.20, MYH19_20  go_component endomembrane system|GO:0012505||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process biological_process|GO:0008150||ND  go_function ATP binding|GO:0005524||ISS  go_function ATPase activity|GO:0016887||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (TAIR:AT3G28600.1); Has 15180 Blast hits to 14096 proteins in 1628 species: Archae - 793; Bacteria - 4381; Metazoa - 2983; Fungi - 1894; Plants - 1334; Viruses - 32; Other Eukaryotes - 3763 (source: NCBI BLink).  protein_id AT5G40000.1p  transcript_id AT5G40000.1  protein_id AT5G40000.1p  transcript_id AT5G40000.1  
At5g40010	chr5:016020218	0.0	C/16020218-16021762	AT5G40010.1  CDS  gene_syn AAA-ATPase 1, AATP1, MYH19.21, MYH19_21  gene AATP1  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATP binding|GO:0005524||ISS  go_function ATPase activity|GO:0016887||ISS  product AATP1 (AAA-ATPase 1); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding  note AAA-ATPase 1 (AATP1); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: stem, inflorescence meristem, flower, root, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT3G28580.1); Has 31876 Blast hits to 20429 proteins in 1746 species: Archae - 754; Bacteria - 4743; Metazoa - 10542; Fungi - 3311; Plants - 1681; Viruses - 199; Other Eukaryotes - 10646 (source: NCBI BLink).  protein_id AT5G40010.1p  transcript_id AT5G40010.1  protein_id AT5G40010.1p  transcript_id AT5G40010.1  
At5g40020	chr5:016024234	0.0	C/16024234-16024294,16023925-16024152,16023510-16023736,16022896-16023150	AT5G40020.1  CDS  gene_syn MYH19.180, MYH19_180  go_component endomembrane system|GO:0012505||IEA  go_process response to other organism|GO:0051707||ISS  go_function molecular_function|GO:0003674||ND  product pathogenesis-related thaumatin family protein  note pathogenesis-related thaumatin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: ATLP-1 (TAIR:AT1G18250.1); Has 1031 Blast hits to 1018 proteins in 139 species: Archae - 0; Bacteria - 16; Metazoa - 48; Fungi - 55; Plants - 907; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G40020.1p  transcript_id AT5G40020.1  protein_id AT5G40020.1p  transcript_id AT5G40020.1  
At5g40030	chr5:016026227	0.0	W/16026227-16026876,16027434-16028283	AT5G40030.1  CDS  gene_syn MUD12.10, MUD12_10  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: shoot apex, embryo, flower, root, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: D6PKL2 (D6 PROTEIN KINASE LIKE 2); kinase (TAIR:AT5G47750.1); Has 82876 Blast hits to 59758 proteins in 1654 species: Archae - 14; Bacteria - 7527; Metazoa - 37757; Fungi - 8504; Plants - 10592; Viruses - 297; Other Eukaryotes - 18185 (source: NCBI BLink).  protein_id AT5G40030.1p  transcript_id AT5G40030.1  protein_id AT5G40030.1p  transcript_id AT5G40030.1  
At5g40040	chr5:016029913	0.0	C/16029913-16030257	AT5G40040.1  CDS  gene_syn MUD12.2, MUD12_2  go_process translational elongation|GO:0006414||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic ribosome|GO:0022626|17934214|IDA  go_process translational elongation|GO:0006414||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S acidic ribosomal protein P2 (RPP2E)  note 60S acidic ribosomal protein P2 (RPP2E); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosolic ribosome, ribosome; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P2 (RPP2C) (TAIR:AT3G28500.1); Has 1006 Blast hits to 1005 proteins in 254 species: Archae - 45; Bacteria - 1; Metazoa - 292; Fungi - 215; Plants - 238; Viruses - 0; Other Eukaryotes - 215 (source: NCBI BLink).  protein_id AT5G40040.1p  transcript_id AT5G40040.1  protein_id AT5G40040.1p  transcript_id AT5G40040.1  
At5g40050	chr5:016033018	0.0	C/16033018-16033551,16032573-16032932,16032083-16032436	AT5G40050.1  CDS  gene_syn MUD12.3, MUD12_3  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G25860.1); Has 1042 Blast hits to 1019 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1042; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G40050.1p  transcript_id AT5G40050.1  protein_id AT5G40050.1p  transcript_id AT5G40050.1  
At5g40060	chr5:016035246	0.0	W/16035246-16036247,16036331-16036639,16036739-16037146,16037434-16038612,16038722-16038730	AT5G40060.1  CDS  gene_syn MUD12.40, MUD12_40  go_process apoptosis|GO:0006915||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  product ATP binding / nucleoside-triphosphatase/ nucleotide binding  note ATP binding / nucleoside-triphosphatase/ nucleotide binding; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: apoptosis; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G46450.1).  protein_id AT5G40060.1p  transcript_id AT5G40060.1  protein_id AT5G40060.1p  transcript_id AT5G40060.1  
At5g40070	chr5:016039179	0.0	W/16039179-16039490,16039586-16039747	AT5G40070.1  CDS  gene_syn MUD12.50, MUD12_50  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: AGL81 (AGAMOUS-LIKE 81); transcription factor (TAIR:AT5G39750.1); Has 44 Blast hits to 42 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 35; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G40070.1p  transcript_id AT5G40070.1  protein_id AT5G40070.1p  transcript_id AT5G40070.1  
At5g40080	chr5:016041379	0.0	C/16041379-16041529,16040544-16040608,16040190-16040258	AT5G40080.1  CDS  gene_syn MUD12.5, MUD12_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product 60S ribosomal protein-related  note 60S ribosomal protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: 60S ribosomal protein-related (TAIR:AT5G39800.1); Has 141 Blast hits to 141 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 78; Fungi - 25; Plants - 25; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT5G40080.1p  transcript_id AT5G40080.1  protein_id AT5G40080.1p  transcript_id AT5G40080.1  
At5g40090	chr5:016042115	0.0	C/16042115-16043494	AT5G40090.1  CDS  gene_syn MUD12.70, MUD12_70  go_component endomembrane system|GO:0012505||IEA  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  product ATP binding / nucleoside-triphosphatase/ nucleotide binding / transmembrane receptor  note ATP binding / nucleoside-triphosphatase/ nucleotide binding / transmembrane receptor; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane, endomembrane system; EXPRESSED IN: shoot apex, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein-related (TAIR:AT1G17610.1); Has 4614 Blast hits to 4583 proteins in 174 species: Archae - 0; Bacteria - 16; Metazoa - 2; Fungi - 0; Plants - 4596; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G40090.1p  transcript_id AT5G40090.1  protein_id AT5G40090.1p  transcript_id AT5G40090.1  
At5g40100	chr5:016043976	0.0	W/16043976-16044442,16044522-16045599,16045680-16045982,16046075-16047163,16047239-16047355	AT5G40100.1  CDS  gene_syn MUD12.7, MUD12_7  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: protein binding, transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: plasma membrane, chloroplast envelope; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat 3 (InterPro:IPR011713), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT1G17600.1); Has 17887 Blast hits to 12154 proteins in 565 species: Archae - 24; Bacteria - 1314; Metazoa - 3056; Fungi - 174; Plants - 12696; Viruses - 2; Other Eukaryotes - 621 (source: NCBI BLink).  protein_id AT5G40100.1p  transcript_id AT5G40100.1  protein_id AT5G40100.1p  transcript_id AT5G40100.1  
At5g40110	chr5:016049934	0.0	W/16049934-16050776	AT5G40110.1  mRNA_TE_gene  pseudo  gene_syn MSN9.1, MSN9_1  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G03950.1); similar to hypothetical protein PF10_0266 [Plasmodium falciparum 3D7] (GB:NP_700739.1)  
At5g40120	chr5:016051879	0.0	W/16051879-16053036	AT5G40120.1  CDS  gene_syn AGAMOUS-LIKE 76, AGL76, MSN9.2, MSN9_2  gene AGL76  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL76 (AGAMOUS-LIKE 76); DNA binding / transcription factor  note AGAMOUS-LIKE 76 (AGL76); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL75 (AGAMOUS-LIKE 75); DNA binding / transcription factor (TAIR:AT5G41200.1); Has 516 Blast hits to 488 proteins in 34 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 340; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink).  protein_id AT5G40120.1p  transcript_id AT5G40120.1  protein_id AT5G40120.1p  transcript_id AT5G40120.1  
At5g40130	chr5:016053697	0.0	C/16053697-16054056	AT5G40130.1  pseudogenic_transcript  pseudo  gene_syn MSN9.30, MSN9_30  note 60S ribosomal protein L5 (RPL5C), pseudogene, 60S RIBOSOMAL PROTEIN L5, Arabidopsis thaliana, SWISSPROT:RL5_ARATH; blastp match of 70% identity and 7.9e-26 P-value to GP|13359453|dbj|BAB33422.1||AB049724 putative senescence-associated protein {Pisum sativum}  
At5g40140	chr5:016057347	0.0	W/16057347-16058999	AT5G40140.1  CDS  gene_syn MSN9.4, MSN9_4  go_component ubiquitin ligase complex|GO:0000151||IEA  go_component chloroplast|GO:0009507||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  product armadillo/beta-catenin repeat family protein / U-box domain-containing protein  note armadillo/beta-catenin repeat family protein / U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex, chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: PUB38 (PLANT U-BOX 38); ubiquitin-protein ligase (TAIR:AT5G65200.1); Has 2156 Blast hits to 1651 proteins in 147 species: Archae - 0; Bacteria - 10; Metazoa - 343; Fungi - 316; Plants - 1273; Viruses - 0; Other Eukaryotes - 214 (source: NCBI BLink).  protein_id AT5G40140.1p  transcript_id AT5G40140.1  protein_id AT5G40140.1p  transcript_id AT5G40140.1  
At5g40150	chr5:016059750	0.0	C/16059750-16060736	AT5G40150.1  CDS  gene_syn MSN9.50, MSN9_50  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT3G28200.1); Has 3213 Blast hits to 3199 proteins in 258 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 351; Plants - 2806; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT5G40150.1p  transcript_id AT5G40150.1  protein_id AT5G40150.1p  transcript_id AT5G40150.1  
At5g40155	chr5:016061956	0.0	W/16061956-16062031,16062176-16062345	AT5G40155.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G40155.1p  transcript_id AT5G40155.1  protein_id AT5G40155.1p  transcript_id AT5G40155.1  
At5g40160	chr5:016063932	0.0	C/16063932-16064301,16063701-16063780,16063475-16063573,16063306-16063404,16063124-16063222,16062938-16063036,16062726-16062827	AT5G40160.1  CDS  gene_syn EMB506, MSN9.60, MSN9_60, embryo defective 506  gene EMB506  function Encodes ankyrin repeat protein EMB506.  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product EMB506 (embryo defective 506); protein binding  note embryo defective 506 (EMB506); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: AKRP (ANKYRIN REPEAT PROTEIN); protein binding (TAIR:AT5G66055.1); Has 76240 Blast hits to 23489 proteins in 936 species: Archae - 85; Bacteria - 5192; Metazoa - 40992; Fungi - 4638; Plants - 1858; Viruses - 1326; Other Eukaryotes - 22149 (source: NCBI BLink).  protein_id AT5G40160.1p  transcript_id AT5G40160.1  protein_id AT5G40160.1p  transcript_id AT5G40160.1  
At5g40170	chr5:016065179	0.0	C/16065179-16067557	AT5G40170.1  CDS  gene_syn AtRLP54, MSN9.70, MSN9_70, Receptor Like Protein 54  gene AtRLP54  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  go_function kinase activity|GO:0016301||ISS  product AtRLP54 (Receptor Like Protein 54); kinase/ protein binding  note Receptor Like Protein 54 (AtRLP54); FUNCTIONS IN: protein binding, kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP27 (Receptor Like Protein 27); kinase/ protein binding (TAIR:AT2G33060.1); Has 59534 Blast hits to 17883 proteins in 780 species: Archae - 51; Bacteria - 3089; Metazoa - 16109; Fungi - 738; Plants - 35078; Viruses - 17; Other Eukaryotes - 4452 (source: NCBI BLink).  protein_id AT5G40170.1p  transcript_id AT5G40170.1  protein_id AT5G40170.1p  transcript_id AT5G40170.1  
At5g40180	chr5:016067923	0.0	W/16067923-16067988,16068078-16068206	AT5G40180.1  CDS  gene_syn MSN9.8, MSN9_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28150.1); Has 67 Blast hits to 67 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G40180.1p  transcript_id AT5G40180.1  protein_id AT5G40180.1p  transcript_id AT5G40180.1  
At5g40190	chr5:016069298	0.0	C/16069298-16069849	AT5G40190.1  CDS  gene_syn MSN9.9, MSN9_9  function Identified in a screen for calmodulin-binding proteins obtained from an auxin treated cDNA library.  go_component intracellular|GO:0005622||IEA  go_process RNA metabolic process|GO:0016070||IEA  go_function calmodulin binding|GO:0005516|11782485|IEP  go_function calmodulin binding|GO:0005516|11782485|TAS  product calmodulin-binding protein  note calmodulin-binding protein; FUNCTIONS IN: calmodulin binding; INVOLVED IN: RNA metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA ligase/cyclic nucleotide phosphodiesterase (InterPro:IPR009097); BEST Arabidopsis thaliana protein match is: calmodulin-binding protein (TAIR:AT3G28140.1); Has 82 Blast hits to 82 proteins in 36 species: Archae - 0; Bacteria - 60; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G40190.1p  transcript_id AT5G40190.1  protein_id AT5G40190.1p  transcript_id AT5G40190.1  
At5g40200	chr5:016070402	0.0	W/16070402-16071005,16071306-16071505,16071597-16071777,16071855-16072046,16072165-16072397,16072495-16072596,16072679-16072729,16072805-16072909,16072991-16073101	AT5G40200.1  CDS  gene_syn DegP protease 9, DegP9, MSN9.100, MSN9_100  gene DegP9  function Encodes a putative DegP protease.  go_component nucleolus|GO:0005730|15496452|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process proteolysis|GO:0006508||IEA  go_function catalytic activity|GO:0003824||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function protein binding|GO:0005515||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type peptidase activity|GO:0008236||ISS  product DegP9 (DegP protease 9); catalytic/ protein binding / serine-type endopeptidase/ serine-type peptidase  note DegP protease 9 (DegP9); FUNCTIONS IN: serine-type peptidase activity, protein binding, catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: nucleolus, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine endopeptidase DegP2 (InterPro:IPR015724), Peptidase, trypsin-like serine and cysteine (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1 and S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DEGP2; serine-type endopeptidase/ serine-type peptidase (TAIR:AT2G47940.2); Has 9383 Blast hits to 9376 proteins in 1374 species: Archae - 52; Bacteria - 5580; Metazoa - 239; Fungi - 16; Plants - 177; Viruses - 2; Other Eukaryotes - 3317 (source: NCBI BLink).  protein_id AT5G40200.1p  transcript_id AT5G40200.1  protein_id AT5G40200.1p  transcript_id AT5G40200.1  
At5g40210	chr5:016075895	0.0	C/16075895-16076088,16075750-16075815,16075446-16075559,16074471-16074663,16074203-16074364,16073954-16074102,16073725-16073866	AT5G40210.1  CDS  gene_syn MSN9.110, MSN9_110  go_component membrane|GO:0016020||IEA  product nodulin MtN21 family protein  note nodulin MtN21 family protein; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT3G28130.2); Has 2194 Blast hits to 2140 proteins in 407 species: Archae - 24; Bacteria - 1151; Metazoa - 9; Fungi - 12; Plants - 628; Viruses - 0; Other Eukaryotes - 370 (source: NCBI BLink).  protein_id AT5G40210.1p  transcript_id AT5G40210.1  protein_id AT5G40210.1p  transcript_id AT5G40210.1  
At5g40212	chr5:016076674	0.0	C/16076674-16078037	AT5G40212.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G40240; nodulin MtN21 family protein  
At5g40220	chr5:016078390	0.0	C/16078390-16079364	AT5G40220.1  CDS  gene_syn AGAMOUS-LIKE 43, AGL43, MSN9.13, MSN9_13  gene AGL43  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL43 (AGAMOUS-LIKE 43); transcription factor  note AGAMOUS-LIKE 43 (AGL43); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL75 (AGAMOUS-LIKE 75); DNA binding / transcription factor (TAIR:AT5G41200.1); Has 349 Blast hits to 342 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 325; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT5G40220.1p  transcript_id AT5G40220.1  protein_id AT5G40220.1p  transcript_id AT5G40220.1  
At5g40230	chr5:016081518	0.0	C/16081518-16081735,16081383-16081448,16081187-16081300,16080657-16080906,16080421-16080579,16080195-16080346,16079814-16079967	AT5G40230.1  CDS  gene_syn MSN9.130, MSN9_130  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_function molecular_function|GO:0003674||ND  product nodulin-related  note nodulin-related; FUNCTIONS IN: molecular_function unknown; LOCATED IN: membrane; EXPRESSED IN: stem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT5G40240.1); Has 1281 Blast hits to 1270 proteins in 230 species: Archae - 10; Bacteria - 508; Metazoa - 6; Fungi - 1; Plants - 627; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).  protein_id AT5G40230.1p  transcript_id AT5G40230.1  protein_id AT5G40230.1p  transcript_id AT5G40230.1  
At5g40240	chr5:016084252	0.0	C/16084252-16084466,16084117-16084182,16083934-16084047,16083252-16083501,16083017-16083175,16082788-16082939,16082325-16082475	AT5G40240.1  CDS  gene_syn MSN9.140, MSN9_140  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_function molecular_function|GO:0003674||ND  product nodulin MtN21 family protein  note nodulin MtN21 family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin-related (TAIR:AT5G40230.1); Has 1618 Blast hits to 1607 proteins in 311 species: Archae - 15; Bacteria - 735; Metazoa - 4; Fungi - 9; Plants - 626; Viruses - 0; Other Eukaryotes - 229 (source: NCBI BLink).  protein_id AT5G40240.1p  transcript_id AT5G40240.1  protein_id AT5G40240.1p  transcript_id AT5G40240.1  
At5g40250	chr5:016086056	0.0	W/16086056-16087186	AT5G40250.1  CDS  gene_syn MSN9.150, MSN9_150  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G23980.1); Has 6304 Blast hits to 6285 proteins in 231 species: Archae - 0; Bacteria - 0; Metazoa - 1962; Fungi - 473; Plants - 2734; Viruses - 60; Other Eukaryotes - 1075 (source: NCBI BLink).  protein_id AT5G40250.1p  transcript_id AT5G40250.1  protein_id AT5G40250.1p  transcript_id AT5G40250.1  
At5g40260	chr5:016089842	0.0	W/16089842-16089884,16090263-16090299,16090588-16090810,16090906-16091067,16091172-16091294,16091396-16091527	AT5G40260.1  CDS  gene_syn MSN9.17, MSN9_17  go_component plasma membrane|GO:0005886|18434608|IDA  go_component membrane|GO:0016020||ISS  go_process pollen wall assembly|GO:0010208|18434608|IMP  product nodulin MtN3 family protein  note nodulin MtN3 family protein; INVOLVED IN: pollen wall assembly; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: MtN3 and saliva related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), MtN3 and saliva related transmembrane protein (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: nodulin MtN3 family protein (TAIR:AT4G10850.1); Has 543 Blast hits to 522 proteins in 90 species: Archae - 0; Bacteria - 4; Metazoa - 182; Fungi - 0; Plants - 309; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT5G40260.1p  transcript_id AT5G40260.1  protein_id AT5G40260.1p  transcript_id AT5G40260.1  
At5g40260	chr5:016089842	0.0	W/16089842-16089884,16090263-16090299,16090588-16090810,16090906-16091067,16091172-16091298,16091401-16091438	AT5G40260.2  CDS  gene_syn MSN9.17, MSN9_17  go_component plasma membrane|GO:0005886|18434608|IDA  go_component membrane|GO:0016020||ISS  go_process pollen wall assembly|GO:0010208|18434608|IMP  product nodulin MtN3 family protein  note nodulin MtN3 family protein; INVOLVED IN: pollen wall assembly; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: MtN3 and saliva related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), MtN3 and saliva related transmembrane protein (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: nodulin MtN3 family protein (TAIR:AT4G10850.1); Has 520 Blast hits to 499 proteins in 88 species: Archae - 0; Bacteria - 4; Metazoa - 162; Fungi - 0; Plants - 309; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT5G40260.2p  transcript_id AT5G40260.2  protein_id AT5G40260.2p  transcript_id AT5G40260.2  
At5g40270	chr5:016096968	0.0	C/16096968-16097093,16096425-16096462,16096313-16096335,16095973-16096079,16095837-16095888,16095678-16095762,16095455-16095545,16095257-16095295,16095097-16095164,16094914-16094976,16094787-16094842,16094641-16094714,16094468-16094560,16094289-16094390,16094108-16094188,16093931-16094022,16093822-16093837,16093603-16093713,16093394-16093498	AT5G40270.1  CDS  gene_syn MSN9.18, MSN9_18  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product metal-dependent phosphohydrolase HD domain-containing protein  note metal-dependent phosphohydrolase HD domain-containing protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD region, subdomain (InterPro:IPR006674), Metal-dependent phosphohydrolase, HD region (InterPro:IPR003607); BEST Arabidopsis thaliana protein match is: metal-dependent phosphohydrolase HD domain-containing protein (TAIR:AT5G40290.1); Has 1528 Blast hits to 1521 proteins in 476 species: Archae - 168; Bacteria - 743; Metazoa - 146; Fungi - 6; Plants - 20; Viruses - 3; Other Eukaryotes - 442 (source: NCBI BLink).  protein_id AT5G40270.1p  transcript_id AT5G40270.1  protein_id AT5G40270.1p  transcript_id AT5G40270.1  
At5g40275	chr5:016098190	0.0	C/16098190-16100051	AT5G40275.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G40275.1  
At5g40280	chr5:016101391	0.0	W/16101391-16101623,16101745-16101831,16101967-16102072,16102245-16102280,16102638-16102720,16102817-16102870,16103020-16103071,16103355-16103419,16103547-16103603,16103769-16103841,16103926-16104012,16104109-16104274,16104356-16104465,16104544-16104783	AT5G40280.1  CDS  gene_syn ARABIDOPSIS THALIANA FARNESYL TRANSFERASE BETA SUBUNIT, ATFTB, ENHANCED RESPONSE TO ABA 1, ERA1, FARNESYL TRANSFERASE BETA SUBUNIT, MSN9.180, MSN9_180, WIG, WIGGUM  gene ERA1  function encodes a beta subunit of farnesyl-trans-transferase, which is involved in meristem organization and ABA-mediated signal transduction pathway. Mutant phenotypes have been observed in meristem organization, and response to abscisic acid and drought.  go_component protein farnesyltransferase complex|GO:0005965|10840062|IMP  go_process response to water deprivation|GO:0009414|16045476|IMP  go_process response to abscisic acid stimulus|GO:0009737|8703061|IMP  go_process negative regulation of abscisic acid mediated signaling|GO:0009788|16045476|IMP  go_process regulation of meristem organization|GO:0009934|9636070|IMP  go_process protein prenylation|GO:0018342|10948248|IMP  go_function farnesyltranstransferase activity|GO:0004311|8703061|ISS  go_function protein farnesyltransferase activity|GO:0004660|10840062|IMP  product ERA1 (ENHANCED RESPONSE TO ABA 1); farnesyltranstransferase/ protein farnesyltransferase  note ENHANCED RESPONSE TO ABA 1 (ERA1); FUNCTIONS IN: farnesyltranstransferase activity, protein farnesyltransferase activity; INVOLVED IN: regulation of meristem organization, protein prenylation, response to water deprivation, negative regulation of abscisic acid mediated signaling, response to abscisic acid stimulus; LOCATED IN: protein farnesyltransferase complex; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: PGGT-I; CAAX-protein geranylgeranyltransferase/ protein heterodimerization (TAIR:AT2G39550.1); Has 1764 Blast hits to 1284 proteins in 195 species: Archae - 2; Bacteria - 24; Metazoa - 596; Fungi - 424; Plants - 210; Viruses - 4; Other Eukaryotes - 504 (source: NCBI BLink).  protein_id AT5G40280.1p  transcript_id AT5G40280.1  protein_id AT5G40280.1p  transcript_id AT5G40280.1  
At5g40290	chr5:016108397	0.0	C/16108397-16108501,16108201-16108238,16108084-16108106,16107791-16107897,16107662-16107713,16107494-16107578,16107209-16107299,16107065-16107103,16106905-16106972,16106761-16106823,16106637-16106692,16106482-16106555,16106319-16106411,16106139-16106240,16105961-16106042,16105776-16105842,16105673-16105688,16105436-16105546,16105259-16105333	AT5G40290.1  CDS  gene_syn MSN9.190, MSN9_190  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product metal-dependent phosphohydrolase HD domain-containing protein  note metal-dependent phosphohydrolase HD domain-containing protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD region, subdomain (InterPro:IPR006674), Metal-dependent phosphohydrolase, HD region (InterPro:IPR003607); BEST Arabidopsis thaliana protein match is: metal-dependent phosphohydrolase HD domain-containing protein (TAIR:AT5G40270.1); Has 1502 Blast hits to 1499 proteins in 476 species: Archae - 168; Bacteria - 735; Metazoa - 146; Fungi - 6; Plants - 20; Viruses - 3; Other Eukaryotes - 424 (source: NCBI BLink).  protein_id AT5G40290.1p  transcript_id AT5G40290.1  protein_id AT5G40290.1p  transcript_id AT5G40290.1  
At5g40300	chr5:016110778	0.0	W/16110778-16111259,16112024-16112159,16112507-16112701	AT5G40300.1  CDS  gene_syn MPO12.1, MPO12_1  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane protein, putative  note integral membrane protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36330.1); Has 119 Blast hits to 119 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 112; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G40300.1p  transcript_id AT5G40300.1  protein_id AT5G40300.1p  transcript_id AT5G40300.1  
At5g40310	chr5:016115651	0.0	C/16115651-16115816,16115437-16115567,16114797-16115224,16114286-16114366,16113272-16113512	AT5G40310.1  CDS  gene_syn MPO12.2, MPO12_2  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function exonuclease activity|GO:0004527||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component intracellular|GO:0005622||ISS  go_process biological_process|GO:0008150||ND  go_function exonuclease activity|GO:0004527||ISS  product exonuclease family protein  note exonuclease family protein; FUNCTIONS IN: zinc ion binding, exonuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T and DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: exonuclease/ nucleic acid binding / zinc ion binding (TAIR:AT3G27970.1); Has 847 Blast hits to 847 proteins in 165 species: Archae - 0; Bacteria - 0; Metazoa - 389; Fungi - 248; Plants - 131; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT5G40310.1p  transcript_id AT5G40310.1  protein_id AT5G40310.1p  transcript_id AT5G40310.1  
At5g40316	chr5:016119296	0.0	C/16119296-16120018	AT5G40316.1  ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G40316.1  
At5g40320	chr5:016121757	0.0	W/16121757-16123541	AT5G40320.1  CDS  gene_syn MPO12.30, MPO12_30  go_process intracellular signaling cascade|GO:0007242||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular signaling cascade; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT5G22355.1); Has 1124 Blast hits to 514 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 1102; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT5G40320.1p  transcript_id AT5G40320.1  protein_id AT5G40320.1p  transcript_id AT5G40320.1  
At5g40330	chr5:016127849	0.0	W/16127849-16127981,16128111-16128240,16129072-16129468	AT5G40330.1  CDS  gene_syn ATMYB23, ATMYBRTF, MPO12.40, MPO12_40, MYB DOMAIN PROTEIN 23, MYB23  gene MYB23  function Encodes a MYB gene that, when overexpressed ectopically, can induce ectopic trichome formation. It is a member of subgroup 15, together with WER and GL1. Members of this subgroup share a conserved motif of 19 amino acids in the putative transcription activation domain at the C-terminal end. The gene is expressed in leaves, stems, flowers, seeds and roots and quite strongly in trichomes. There is partial functional redundancy between ATMYB23 and GL1. The two proteins are functionally equivalent with respect to the regulation of trichome initiation but not with respect to trichome branching - which is controlled by MYB23 and not GL1.  go_component nucleus|GO:0005634|19395683|IDA  go_process trichome differentiation|GO:0010026|11437443|IMP  go_process root epidermal cell differentiation|GO:0010053|19395683|IMP  go_process trichome branching|GO:0010091|15728674|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process trichome patterning|GO:0048629|15728674|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function protein binding|GO:0005515|15728674|IPI  product MYB23 (MYB DOMAIN PROTEIN 23); DNA binding / protein binding / transcription factor  note MYB DOMAIN PROTEIN 23 (MYB23); FUNCTIONS IN: protein binding, transcription factor activity, DNA binding; INVOLVED IN: root epidermal cell differentiation, trichome branching, trichome differentiation, trichome patterning, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 leaf senescence stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: ATMYB0 (MYB DOMAIN PROTEIN 0); DNA binding / protein binding / transcription activator/ transcription factor (TAIR:AT3G27920.1); Has 6371 Blast hits to 5880 proteins in 360 species: Archae - 0; Bacteria - 0; Metazoa - 623; Fungi - 314; Plants - 3793; Viruses - 3; Other Eukaryotes - 1638 (source: NCBI BLink).  protein_id AT5G40330.1p  transcript_id AT5G40330.1  protein_id AT5G40330.1p  transcript_id AT5G40330.1  
At5g40340	chr5:016131654	0.0	C/16131654-16134680	AT5G40340.1  CDS  gene_syn MPO12.6, MPO12_6  go_component nucleolus|GO:0005730|15496452|IDA  go_function molecular_function|GO:0003674||ND  product PWWP domain-containing protein  note PWWP domain-containing protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: PWWP domain-containing protein (TAIR:AT3G27860.1); Has 195908 Blast hits to 79487 proteins in 2240 species: Archae - 636; Bacteria - 15017; Metazoa - 93678; Fungi - 19946; Plants - 8244; Viruses - 1524; Other Eukaryotes - 56863 (source: NCBI BLink).  protein_id AT5G40340.1p  transcript_id AT5G40340.1  protein_id AT5G40340.1p  transcript_id AT5G40340.1  
At5g40348	chr5:016136594	0.0	W/16136594-16141163	AT5G40348.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT5G40350  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G40348.1  
At5g40348	chr5:016139799	0.0	W/16139799-16141361	AT5G40348.2  ncRNA  function Potential natural antisense gene, locus overlaps with AT5G40350  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G40348.2  
At5g40350	chr5:016140799	0.0	C/16140799-16140946,16139871-16140000,16138703-16139069	AT5G40350.1  CDS  gene_syn AtMYB24, MPO12.60, MPO12_60, MYB24, myb domain protein 24  gene MYB24  function Myb24 transcription factor. Member of the R2R3 factor gene family. Induced by jasmonate. Involved in jasmonate response during stamen development.  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to jasmonic acid stimulus|GO:0009753|16805732|IEP  go_process stamen development|GO:0048443|16805732|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB24 (myb domain protein 24); DNA binding / transcription factor  note myb domain protein 24 (MYB24); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: stamen development, response to jasmonic acid stimulus, regulation of transcription, DNA-dependent; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: ATMYB21 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 21); DNA binding / transcription factor (TAIR:AT3G27810.1); Has 6258 Blast hits to 5725 proteins in 350 species: Archae - 0; Bacteria - 0; Metazoa - 678; Fungi - 289; Plants - 3728; Viruses - 6; Other Eukaryotes - 1557 (source: NCBI BLink).  protein_id AT5G40350.1p  transcript_id AT5G40350.1  protein_id AT5G40350.1p  transcript_id AT5G40350.1  
At5g40360	chr5:016145220	0.0	W/16145220-16145719,16145900-16146026,16146127-16146579	AT5G40360.1  CDS  gene_syn AtMYB115, MPO12.8, MPO12_8, MYB115, myb domain protein 115  gene MYB115  function putative transcription factor (MYB115)  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product MYB115 (myb domain protein 115); DNA binding / transcription factor  note myb domain protein 115 (MYB115); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: male gametophyte, sepal, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB118; DNA binding / transcription activator/ transcription factor (TAIR:AT3G27785.1); Has 6674 Blast hits to 5836 proteins in 374 species: Archae - 0; Bacteria - 2; Metazoa - 749; Fungi - 450; Plants - 3538; Viruses - 5; Other Eukaryotes - 1930 (source: NCBI BLink).  protein_id AT5G40360.1p  transcript_id AT5G40360.1  protein_id AT5G40360.1p  transcript_id AT5G40360.1  
At5g40370	chr5:016148681	0.0	C/16148681-16148900,16148036-16148134,16147826-16147917	AT5G40370.2  CDS  gene_syn MPO12.80, MPO12_80  go_component plasma membrane|GO:0005886|17644812|IDA  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  go_function arsenate reductase (glutaredoxin) activity|GO:0008794||ISS  product glutaredoxin, putative  note glutaredoxin, putative; FUNCTIONS IN: electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutaredoxin, eukaryotic and viruses (InterPro:IPR011899), Glutaredoxin subgroup (InterPro:IPR014025), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin, putative (TAIR:AT5G63030.1); Has 4824 Blast hits to 4814 proteins in 838 species: Archae - 0; Bacteria - 2010; Metazoa - 439; Fungi - 264; Plants - 472; Viruses - 0; Other Eukaryotes - 1639 (source: NCBI BLink).  protein_id AT5G40370.2p  transcript_id AT5G40370.2  protein_id AT5G40370.2p  transcript_id AT5G40370.2  
At5g40370	chr5:016148997	0.0	C/16148997-16149052,16148681-16148769,16148036-16148134,16147826-16147917	AT5G40370.1  CDS  gene_syn MPO12.80, MPO12_80  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  go_function arsenate reductase (glutaredoxin) activity|GO:0008794||ISS  product glutaredoxin, putative  note glutaredoxin, putative; FUNCTIONS IN: electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin (InterPro:IPR002109), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin subgroup (InterPro:IPR014025), Glutaredoxin active site (InterPro:IPR011767), Glutaredoxin, eukaryotic and viruses (InterPro:IPR011899), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin, putative (TAIR:AT5G63030.1); Has 6100 Blast hits to 6075 proteins in 885 species: Archae - 0; Bacteria - 2513; Metazoa - 527; Fungi - 301; Plants - 521; Viruses - 107; Other Eukaryotes - 2131 (source: NCBI BLink).  protein_id AT5G40370.1p  transcript_id AT5G40370.1  protein_id AT5G40370.1p  transcript_id AT5G40370.1  
At5g40380	chr5:016152301	0.0	W/16152301-16152859,16153140-16153253,16153494-16153844,16154092-16154326,16154435-16154579,16154667-16155038	AT5G40380.1  CDS  gene_syn MPO12.90, MPO12_90  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G70530.1); Has 84219 Blast hits to 83097 proteins in 3207 species: Archae - 52; Bacteria - 7519; Metazoa - 36819; Fungi - 6383; Plants - 18752; Viruses - 402; Other Eukaryotes - 14292 (source: NCBI BLink).  protein_id AT5G40380.1p  transcript_id AT5G40380.1  protein_id AT5G40380.1p  transcript_id AT5G40380.1  
At5g40382	chr5:016155486	0.0	C/16155486-16155683	AT5G40382.1  CDS  go_component mitochondrial respiratory chain|GO:0005746||IEA  go_component endomembrane system|GO:0012505||IEA  go_function cytochrome-c oxidase activity|GO:0004129||IEA  go_process biological_process|GO:0008150||ND  product cytochrome-c oxidase  note cytochrome-c oxidase; FUNCTIONS IN: cytochrome-c oxidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrial respiratory chain, endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase subunit Vc (InterPro:IPR008432); BEST Arabidopsis thaliana protein match is: cytochrome c oxidase subunit Vc, putative / COX5C, putative (TAIR:AT5G61310.4); Has 59 Blast hits to 59 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G40382.1p  transcript_id AT5G40382.1  protein_id AT5G40382.1p  transcript_id AT5G40382.1  
At5g40384	chr5:016157823	0.0	C/16157823-16157948	AT5G40384.1  miRNA  gene_syn MICRORNA866A, MIR866A  gene MIR866A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: ACAAAAUCCGUCUUUGAAGA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR866A (MICRORNA866A); miRNA  transcript_id AT5G40384.1  
At5g40390	chr5:016161720	0.0	W/16161720-16162591,16162923-16163298,16163383-16163560,16163675-16164042,16164528-16165085	AT5G40390.1  CDS  gene_syn MPO12.100, MPO12_100, SIP1, seed imbibition 1-like  gene SIP1  function Encodes a protein which might be involved in the formation of verbascose. A T-DNA insertion mutant was shown to have a decreased amount of verbascose (as well as mannitol) whereas the levels of raffinose and stachyose remained unchanged.  go_component chloroplast|GO:0009507|18431481|IDA  go_process sucrose biosynthetic process|GO:0005986||IMP  go_process raffinose family oligosaccharide biosynthetic process|GO:0010325||IMP  go_process mannitol biosynthetic process|GO:0019593||IMP  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function galactinol-sucrose galactosyltransferase activity|GO:0047274|15034167|ISS  product SIP1 (seed imbibition 1-like); galactinol-sucrose galactosyltransferase/ hydrolase, hydrolyzing O-glycosyl compounds  note seed imbibition 1-like (SIP1); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, galactinol-sucrose galactosyltransferase activity; INVOLVED IN: raffinose family oligosaccharide biosynthetic process, mannitol biosynthetic process, sucrose biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Raffinose synthase (InterPro:IPR008811); BEST Arabidopsis thaliana protein match is: DIN10 (DARK INDUCIBLE 10); hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT5G20250.3); Has 269 Blast hits to 247 proteins in 73 species: Archae - 7; Bacteria - 27; Metazoa - 0; Fungi - 51; Plants - 180; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G40390.1p  transcript_id AT5G40390.1  protein_id AT5G40390.1p  transcript_id AT5G40390.1  
At5g40395	chr5:016166180	0.0	C/16166180-16166387	AT5G40395.1  snRNA  gene_syn 67751.SNRNA00001, U6acat  gene U6acat  go_component snRNP U6atac|GO:0005691||TAS  go_process nuclear mRNA splicing, via spliceosome|GO:0000398||TAS  go_function RNA splicing factor activity, transesterification mechanism|GO:0031202||TAS  product U6acat; snRNA  note gi|2351067|dbj|AB006702.1| Arabidopsis thaliana U6acat At5g40400 gi|2351067|dbj|AB006702.1|  transcript_id AT5G40395.1  
At5g40400	chr5:016166444	0.0	W/16166444-16168276	AT5G40400.1  CDS  gene_syn MPO12.110, MPO12_110  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G55840.1); Has 18933 Blast hits to 5737 proteins in 174 species: Archae - 4; Bacteria - 8; Metazoa - 352; Fungi - 335; Plants - 17540; Viruses - 0; Other Eukaryotes - 694 (source: NCBI BLink).  protein_id AT5G40400.1p  transcript_id AT5G40400.1  protein_id AT5G40400.1p  transcript_id AT5G40400.1  
At5g40405	chr5:016169315	0.0	W/16169315-16171153	AT5G40405.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G66520.1); Has 12548 Blast hits to 5076 proteins in 168 species: Archae - 0; Bacteria - 2; Metazoa - 87; Fungi - 66; Plants - 12146; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).  protein_id AT5G40405.1p  transcript_id AT5G40405.1  protein_id AT5G40405.1p  transcript_id AT5G40405.1  
At5g40410	chr5:016171385	0.0	W/16171385-16173211	AT5G40410.1  CDS  gene_syn MPO12.120, MPO12_120  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G08070.1); Has 12213 Blast hits to 4641 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 61; Fungi - 12; Plants - 12006; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).  protein_id AT5G40410.1p  transcript_id AT5G40410.1  protein_id AT5G40410.1p  transcript_id AT5G40410.1  
At5g40420	chr5:016174582	0.0	C/16174582-16174740,16173622-16174062	AT5G40420.1  CDS  gene_syn OLE2, OLEO2, OLEOSIN 2  gene OLEO2  function Encodes oleosin2, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Functions in freezing tolerance of seeds.  go_component monolayer-surrounded lipid storage body|GO:0012511|8539295|IDA  go_component membrane|GO:0016020||ISS  go_process seed germination|GO:0009845|18485063|IGI  go_process seed oilbody biogenesis|GO:0010344|16877495|IMP  go_process seed oilbody biogenesis|GO:0010344|18485063|IGI  go_process lipid storage|GO:0019915|16877495|IMP  go_process lipid storage|GO:0019915||ISS  go_process response to freezing|GO:0050826|18485063|IMP  go_function molecular_function|GO:0003674||ND  product OLEO2 (OLEOSIN 2)  note OLEOSIN 2 (OLEO2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to freezing, lipid storage, seed germination, seed oilbody biogenesis; LOCATED IN: monolayer-surrounded lipid storage body, membrane; CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136); BEST Arabidopsis thaliana protein match is: OLEO4 (OLEOSIN 4) (TAIR:AT3G27660.1); Has 389 Blast hits to 389 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 389; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G40420.1p  transcript_id AT5G40420.1  protein_id AT5G40420.1p  transcript_id AT5G40420.1  
At5g40430	chr5:016177544	0.0	C/16177544-16177731,16177274-16177397,16176427-16176885	AT5G40430.1  CDS  gene_syn AtMYB22, MPO12.140, MPO12_140, MYB22, myb domain protein 22  gene MYB22  function Encodes a putative transcription factor (MYB22).  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product MYB22 (myb domain protein 22); DNA binding / transcription factor  note myb domain protein 22 (MYB22); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB100 (myb domain protein 100); DNA binding / transcription factor (TAIR:AT2G25230.1); Has 6366 Blast hits to 5617 proteins in 364 species: Archae - 0; Bacteria - 2; Metazoa - 780; Fungi - 450; Plants - 3277; Viruses - 3; Other Eukaryotes - 1854 (source: NCBI BLink).  protein_id AT5G40430.1p  transcript_id AT5G40430.1  protein_id AT5G40430.1p  transcript_id AT5G40430.1  
At5g40440	chr5:016182149	0.0	W/16182149-16182250,16182338-16182592,16182682-16182900,16182999-16183136,16183235-16183402,16183480-16183593,16183857-16183964,16184055-16184513	AT5G40440.1  CDS  gene_syn ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 3, ATMKK3, MITOGEN-ACTIVATED PROTEIN KINASE KINASE 3, MKK3, MPO12.150, MPO12_150  gene ATMKK3  function encodes a mitogen-activated protein kinase kinase  go_process MAPKKK cascade|GO:0000165||ISS  go_process defense response, incompatible interaction|GO:0009814|17933903|IMP  go_process induced systemic resistance, jasmonic acid mediated signaling pathway|GO:0009864|17369371|IEP  go_process induced systemic resistance, ethylene mediated signaling pathway|GO:0009866|17369371|IEP  go_function MAP kinase kinase activity|GO:0004708|10048483|ISS  go_function MAP kinase kinase activity|GO:0004708|17933903|IDA  go_function MAP kinase kinase activity|GO:0004708||ISS  product ATMKK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 3); MAP kinase kinase  note ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 3 (ATMKK3); FUNCTIONS IN: MAP kinase kinase activity; INVOLVED IN: MAPKKK cascade, defense response, incompatible interaction, induced systemic resistance, jasmonic acid mediated signaling pathway, induced systemic resistance, ethylene mediated signaling pathway; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: MKK6 (MAP KINASE KINASE 6); MAP kinase kinase/ kinase (TAIR:AT5G56580.1); Has 89912 Blast hits to 88785 proteins in 2824 species: Archae - 50; Bacteria - 7844; Metazoa - 39160; Fungi - 8077; Plants - 17743; Viruses - 465; Other Eukaryotes - 16573 (source: NCBI BLink).  protein_id AT5G40440.1p  transcript_id AT5G40440.1  protein_id AT5G40440.1p  transcript_id AT5G40440.1  
At5g40450	chr5:016193301	0.0	C/16193301-16193657,16192573-16193040,16192242-16192478,16190239-16192005,16189826-16190158,16185780-16189628,16185564-16185668,16185356-16185481,16184799-16185242	AT5G40450.1  CDS  gene_syn MPO12.160, MPO12_160  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28770.1); Has 222145 Blast hits to 74171 proteins in 2066 species: Archae - 1478; Bacteria - 23379; Metazoa - 97811; Fungi - 22006; Plants - 7575; Viruses - 1468; Other Eukaryotes - 68428 (source: NCBI BLink).  protein_id AT5G40450.1p  transcript_id AT5G40450.1  protein_id AT5G40450.1p  transcript_id AT5G40450.1  
At5g40450	chr5:016193301	0.0	C/16193301-16193657,16192573-16193040,16192242-16192478,16190239-16192005,16189826-16190158,16185780-16189628,16185564-16185668,16185356-16185481,16185203-16185238	AT5G40450.2  CDS  gene_syn MPO12.160, MPO12_160  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28770.1); Has 207210 Blast hits to 70011 proteins in 2000 species: Archae - 1330; Bacteria - 21338; Metazoa - 92246; Fungi - 20682; Plants - 7172; Viruses - 1405; Other Eukaryotes - 63037 (source: NCBI BLink).  protein_id AT5G40450.2p  transcript_id AT5G40450.2  protein_id AT5G40450.2p  transcript_id AT5G40450.2  
At5g40451	chr5:016195469	0.0	C/16195469-16195513,16194822-16194990,16194513-16194730,16194337-16194426,16193760-16194212	AT5G40451.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40450.2); Has 9518 Blast hits to 5919 proteins in 574 species: Archae - 29; Bacteria - 1055; Metazoa - 3134; Fungi - 763; Plants - 338; Viruses - 136; Other Eukaryotes - 4063 (source: NCBI BLink).  protein_id AT5G40451.1p  transcript_id AT5G40451.1  protein_id AT5G40451.1p  transcript_id AT5G40451.1  
At5g40460	chr5:016202465	0.0	W/16202465-16202803	AT5G40460.1  CDS  gene_syn K21I16.3, K21I16_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27630.1); Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G40460.1p  transcript_id AT5G40460.1  protein_id AT5G40460.1p  transcript_id AT5G40460.1  
At5g40470	chr5:016208255	0.0	C/16208255-16209745	AT5G40470.1  CDS  gene_syn K21I16.4, K21I16_4  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: F-box family protein (FBL4) (TAIR:AT4G15475.1); Has 1784 Blast hits to 1176 proteins in 130 species: Archae - 0; Bacteria - 16; Metazoa - 963; Fungi - 149; Plants - 477; Viruses - 0; Other Eukaryotes - 179 (source: NCBI BLink).  protein_id AT5G40470.1p  transcript_id AT5G40470.1  protein_id AT5G40470.1p  transcript_id AT5G40470.1  
At5g40480	chr5:016213361	0.0	W/16213361-16213533,16213612-16213877,16213963-16214129,16214214-16214430,16214723-16215069,16215488-16215667,16215752-16215887,16215972-16216120,16216273-16216384,16216504-16217075,16217181-16217304,16217430-16217707,16217800-16217910,16218084-16218146,16218359-16218550,16218746-16218805,16218930-16218998,16219221-16219367,16219461-16219580,16219685-16219801,16219959-16220114,16220206-16220268,16220362-16220432,16220858-16221269,16221425-16221527,16221619-16221728,16221852-16221923,16222063-16222138,16222241-16222348,16222471-16222600,16222679-16222753,16222854-16223070,16223153-16223207,16223289-16223380,16223484-16223544,16223624-16223982	AT5G40480.1  CDS  gene_syn EMB3012, K21I16.30, K21I16_30, embryo defective 3012  gene EMB3012  go_component endomembrane system|GO:0012505||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product EMB3012 (embryo defective 3012)  note embryo defective 3012 (EMB3012); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Invasin/intimin cell-adhesion (InterPro:IPR008964), Bacterial Ig-like, group 2 (InterPro:IPR003343); Has 199 Blast hits to 175 proteins in 66 species: Archae - 0; Bacteria - 19; Metazoa - 135; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT5G40480.1p  transcript_id AT5G40480.1  protein_id AT5G40480.1p  transcript_id AT5G40480.1  
At5g40490	chr5:016225483	0.0	W/16225483-16225607,16225907-16225947,16226051-16226214,16226305-16226404,16226494-16226663,16226752-16227423	AT5G40490.1  CDS  gene_syn MNF13.1, MNF13_1  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT3G13224.2); Has 207697 Blast hits to 57756 proteins in 2143 species: Archae - 287; Bacteria - 45104; Metazoa - 91623; Fungi - 15037; Plants - 19443; Viruses - 2208; Other Eukaryotes - 33995 (source: NCBI BLink).  protein_id AT5G40490.1p  transcript_id AT5G40490.1  protein_id AT5G40490.1p  transcript_id AT5G40490.1  
At5g40500	chr5:016227984	0.0	W/16227984-16228022,16228120-16228245,16228339-16228518	AT5G40500.2  CDS  gene_syn MNF13.2, MNF13_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 22 Blast hits to 22 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G40500.2p  transcript_id AT5G40500.2  protein_id AT5G40500.2p  transcript_id AT5G40500.2  
At5g40500	chr5:016227984	0.0	W/16227984-16228049,16228120-16228245,16228339-16228518	AT5G40500.1  CDS  gene_syn MNF13.2, MNF13_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 22 Blast hits to 22 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G40500.1p  transcript_id AT5G40500.1  protein_id AT5G40500.1p  transcript_id AT5G40500.1  
At5g40510	chr5:016229277	0.0	W/16229277-16229510,16229611-16229684,16229921-16230226,16230304-16230387,16230495-16230798	AT5G40510.1  CDS  gene_syn MNF13.5, MNF13_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Sucraseferredoxin-like (InterPro:IPR009737), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27570.1); Has 291 Blast hits to 291 proteins in 101 species: Archae - 6; Bacteria - 54; Metazoa - 0; Fungi - 160; Plants - 40; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT5G40510.1p  transcript_id AT5G40510.1  protein_id AT5G40510.1p  transcript_id AT5G40510.1  
At5g40520	chr5:016231956	0.0	C/16231956-16233546,16231655-16231748,16231515-16231554	AT5G40520.1  CDS  gene_syn MNF13.3, MNF13_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; Has 3596 Blast hits to 2339 proteins in 308 species: Archae - 2; Bacteria - 465; Metazoa - 1062; Fungi - 495; Plants - 165; Viruses - 77; Other Eukaryotes - 1330 (source: NCBI BLink).  protein_id AT5G40520.1p  transcript_id AT5G40520.1  protein_id AT5G40520.1p  transcript_id AT5G40520.1  
At5g40520	chr5:016234179	0.0	C/16234179-16234276,16233909-16233968,16233789-16233822,16231956-16233711,16231655-16231748,16231515-16231554	AT5G40520.2  CDS  gene_syn MNF13.3, MNF13_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; Has 3615 Blast hits to 2351 proteins in 309 species: Archae - 2; Bacteria - 465; Metazoa - 1063; Fungi - 498; Plants - 168; Viruses - 77; Other Eukaryotes - 1342 (source: NCBI BLink).  protein_id AT5G40520.2p  transcript_id AT5G40520.2  protein_id AT5G40520.2p  transcript_id AT5G40520.2  
At5g40530	chr5:016234551	0.0	W/16234551-16234751,16234837-16234898,16234978-16235029,16235115-16235229,16235315-16235409,16235499-16235605,16235699-16235813,16235883-16235927,16236029-16236100	AT5G40530.1  CDS  gene_syn MNF13.4, MNF13_4  product unknown protein  note EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase-related (InterPro:IPR007823); Has 293 Blast hits to 293 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 93; Fungi - 88; Plants - 22; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT5G40530.1p  transcript_id AT5G40530.1  protein_id AT5G40530.1p  transcript_id AT5G40530.1  
At5g40530	chr5:016234551	0.0	W/16234551-16234751,16234837-16234898,16234978-16235029,16235115-16235229,16235315-16235409,16235499-16235605,16235699-16235972	AT5G40530.2  CDS  gene_syn MNF13.4, MNF13_4  product unknown protein  note EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase-related (InterPro:IPR007823); Has 293 Blast hits to 293 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 93; Fungi - 88; Plants - 22; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT5G40530.2p  transcript_id AT5G40530.2  protein_id AT5G40530.2p  transcript_id AT5G40530.2  
At5g40540	chr5:016237630	0.0	W/16237630-16237760,16238184-16238316,16238415-16238610,16238687-16238811,16238899-16239057,16239153-16239470	AT5G40540.1  CDS  gene_syn MNF13.60, MNF13_60  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine-protein kinase, ATN1-like (InterPro:IPR015784), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATN1; kinase/ protein serine/threonine kinase/ protein serine/threonine/tyrosine kinase/ protein tyrosine kinase (TAIR:AT3G27560.1); Has 89143 Blast hits to 88026 proteins in 3362 species: Archae - 73; Bacteria - 7481; Metazoa - 40062; Fungi - 7314; Plants - 18212; Viruses - 381; Other Eukaryotes - 15620 (source: NCBI BLink).  protein_id AT5G40540.1p  transcript_id AT5G40540.1  protein_id AT5G40540.1p  transcript_id AT5G40540.1  
At5g40545	chr5:016239638	0.0	C/16239638-16239709	AT5G40545.1  tRNA  gene_syn 67753.TRNA-ASP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asp (anticodon: GTC)  transcript_id AT5G40545.1  
At5g40550	chr5:016241285	0.0	W/16241285-16241402,16241650-16241743,16241877-16241956,16242035-16242153,16242227-16242312,16242497-16242550,16242632-16242785,16242896-16242909,16242998-16243100	AT5G40550.1  CDS  gene_syn MNF13.7, MNF13_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1325 (InterPro:IPR010750); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27460.1); Has 201 Blast hits to 201 proteins in 96 species: Archae - 0; Bacteria - 0; Metazoa - 98; Fungi - 67; Plants - 24; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT5G40550.1p  transcript_id AT5G40550.1  protein_id AT5G40550.1p  transcript_id AT5G40550.1  
At5g40560	chr5:016244543	0.0	W/16244543-16244768,16244933-16245128,16245228-16245484,16245580-16245707,16245817-16245951,16246147-16246197,16246280-16246519	AT5G40560.1  CDS  gene_syn DegP protease 13, DegP13, MNF13.8, MNF13_8  gene DegP13  function Encodes a putative DegP protease.  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function catalytic activity|GO:0003824||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function protein binding|GO:0005515||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type peptidase activity|GO:0008236||ISS  product DegP13 (DegP protease 13); catalytic/ protein binding / serine-type endopeptidase/ serine-type peptidase  note DegP protease 13 (DegP13); FUNCTIONS IN: serine-type peptidase activity, protein binding, catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Serine endopeptidase DegP2 (InterPro:IPR015724), Peptidase, trypsin-like serine and cysteine (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1 and S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DegP10 (DegP protease 10); catalytic/ protein binding / serine-type endopeptidase/ serine-type peptidase (TAIR:AT5G36950.1); Has 8513 Blast hits to 8507 proteins in 1341 species: Archae - 50; Bacteria - 5083; Metazoa - 224; Fungi - 2; Plants - 180; Viruses - 0; Other Eukaryotes - 2974 (source: NCBI BLink).  protein_id AT5G40560.1p  transcript_id AT5G40560.1  protein_id AT5G40560.1p  transcript_id AT5G40560.1  
At5g40570	chr5:016246798	0.0	W/16246798-16247021,16247486-16247506,16247588-16247685,16247794-16247961,16248041-16248083,16248170-16248251	AT5G40570.2  CDS  gene_syn MNF13.9, MNF13_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product surfeit locus protein 2 family protein / SURF2 family protein  note surfeit locus protein 2 family protein / SURF2 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Surfeit locus 2 (InterPro:IPR008833); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G14440.2); Has 59 Blast hits to 59 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 32; Fungi - 2; Plants - 14; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT5G40570.2p  transcript_id AT5G40570.2  protein_id AT5G40570.2p  transcript_id AT5G40570.2  
At5g40570	chr5:016246798	0.0	W/16246798-16247021,16247588-16247685,16247794-16247961,16248041-16248083,16248170-16248251	AT5G40570.1  CDS  gene_syn MNF13.9, MNF13_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product surfeit locus protein 2 family protein / SURF2 family protein  note surfeit locus protein 2 family protein / SURF2 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Surfeit locus 2 (InterPro:IPR008833); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G14440.2); Has 67 Blast hits to 67 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 41; Fungi - 2; Plants - 14; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G40570.1p  transcript_id AT5G40570.1  protein_id AT5G40570.1p  transcript_id AT5G40570.1  
At5g40580	chr5:016250308	0.0	C/16250308-16250451,16249738-16249879,16249516-16249612,16249365-16249434,16249161-16249265,16248979-16249077,16248715-16248802,16248511-16248590	AT5G40580.1  CDS  gene_syn 20S PROTEASOME BETA SUBUNIT PBB2, MNF13.100, MNF13_100, PBB2  gene PBB2  function Encodes 20S proteasome beta subunit PBB2 (PBB2).  go_function endopeptidase activity|GO:0004175||IEA  go_function threonine-type endopeptidase activity|GO:0004298||IEA  go_component proteasome core complex|GO:0005839|9373170|TAS  go_component proteasome core complex|GO:0005839|9611183|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_function peptidase activity|GO:0008233||ISS  product PBB2; endopeptidase/ peptidase/ threonine-type endopeptidase  note PBB2; FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Peptidase T1A, proteasome beta-subunit (InterPro:IPR000243), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: PBB1; endopeptidase/ peptidase/ threonine-type endopeptidase (TAIR:AT3G27430.2); Has 4302 Blast hits to 4301 proteins in 396 species: Archae - 497; Bacteria - 169; Metazoa - 1585; Fungi - 882; Plants - 428; Viruses - 0; Other Eukaryotes - 741 (source: NCBI BLink).  protein_id AT5G40580.1p  transcript_id AT5G40580.1  protein_id AT5G40580.1p  transcript_id AT5G40580.1  
At5g40580	chr5:016250308	0.0	C/16250308-16250451,16249738-16249879,16249516-16249612,16249365-16249434,16249161-16249265,16248979-16249077,16248715-16248802,16248511-16248590	AT5G40580.2  CDS  gene_syn 20S PROTEASOME BETA SUBUNIT PBB2, MNF13.100, MNF13_100, PBB2  gene PBB2  function Encodes 20S proteasome beta subunit PBB2 (PBB2).  go_function endopeptidase activity|GO:0004175||IEA  go_function threonine-type endopeptidase activity|GO:0004298||IEA  go_component proteasome core complex|GO:0005839|9373170|TAS  go_component proteasome core complex|GO:0005839|9611183|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_function peptidase activity|GO:0008233||ISS  product PBB2; endopeptidase/ peptidase/ threonine-type endopeptidase  note PBB2; FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Peptidase T1A, proteasome beta-subunit (InterPro:IPR000243), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: PBB1; endopeptidase/ peptidase/ threonine-type endopeptidase (TAIR:AT3G27430.2); Has 4302 Blast hits to 4301 proteins in 396 species: Archae - 497; Bacteria - 169; Metazoa - 1585; Fungi - 882; Plants - 428; Viruses - 0; Other Eukaryotes - 741 (source: NCBI BLink).  protein_id AT5G40580.2p  transcript_id AT5G40580.2  protein_id AT5G40580.2p  transcript_id AT5G40580.2  
At5g40590	chr5:016251609	0.0	C/16251609-16252313	AT5G40590.1  CDS  gene_syn MNF13.11, MNF13_11  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT2G44370.1); Has 1561 Blast hits to 538 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1553; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G40590.1p  transcript_id AT5G40590.1  protein_id AT5G40590.1p  transcript_id AT5G40590.1  
At5g40595	chr5:016253510	0.0	W/16253510-16253776,16253921-16254079	AT5G40595.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 28 Blast hits to 28 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G40595.1p  transcript_id AT5G40595.1  protein_id AT5G40595.1p  transcript_id AT5G40595.1  
At5g40600	chr5:016256648	0.0	C/16256648-16256765,16256540-16256603,16255857-16256160,16255654-16255767,16255484-16255573,16255350-16255394,16255044-16255229	AT5G40600.1  CDS  gene_syn MNF13.13, MNF13_13  go_component endomembrane system|GO:0012505||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27420.1); Has 20 Blast hits to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G40600.1p  transcript_id AT5G40600.1  protein_id AT5G40600.1p  transcript_id AT5G40600.1  
At5g40605	chr5:016259229	0.0	W/16259229-16264465	AT5G40605.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.7e-45 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At5g40610	chr5:016267006	0.0	C/16267006-16267258,16266686-16266762,16266528-16266600,16266235-16266452,16266048-16266155,16265843-16265944,16265630-16265750,16265483-16265537,16265352-16265400,16265071-16265217	AT5G40610.1  CDS  gene_syn MNF13.130, MNF13_130  go_component cytoplasm|GO:0005737||IEA  go_component glycerol-3-phosphate dehydrogenase complex|GO:0009331||IEA  go_component chloroplast|GO:0009507||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process glycerol-3-phosphate metabolic process|GO:0006072||IEA  go_process metabolic process|GO:0008152||IEA  go_process glycerol-3-phosphate catabolic process|GO:0046168||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function glycerol-3-phosphate dehydrogenase (NAD+) activity|GO:0004367||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on CH-OH group of donors|GO:0016614||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_function protein homodimerization activity|GO:0042803||IEA  go_function coenzyme binding|GO:0050662||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_component glycerol-3-phosphate dehydrogenase complex|GO:0009331||ISS  go_process glycerol-3-phosphate metabolic process|GO:0006072||ISS  go_function glycerol-3-phosphate dehydrogenase (NAD+) activity|GO:0004367||ISS  product glycerol-3-phosphate dehydrogenase (NAD+) / GPDH  note glycerol-3-phosphate dehydrogenase (NAD+) / GPDH; FUNCTIONS IN: in 9 functions; INVOLVED IN: oxidation reduction, glycerol-3-phosphate metabolic process, glycerol-3-phosphate catabolic process, carbohydrate metabolic process, metabolic process; LOCATED IN: chloroplast, glycerol-3-phosphate dehydrogenase complex, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal (InterPro:IPR011128), NAD-dependent glycerol-3-phosphate dehydrogenase (InterPro:IPR006168), NAD-dependent glycerol-3-phosphate dehydrogenase, eukaryotic (InterPro:IPR017751), NAD(P)-binding (InterPro:IPR016040), NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal (InterPro:IPR006109); BEST Arabidopsis thaliana protein match is: GLY1; glycerol-3-phosphate dehydrogenase (NAD+) (TAIR:AT2G40690.1); Has 5564 Blast hits to 5552 proteins in 1603 species: Archae - 12; Bacteria - 2810; Metazoa - 565; Fungi - 226; Plants - 97; Viruses - 0; Other Eukaryotes - 1854 (source: NCBI BLink).  protein_id AT5G40610.1p  transcript_id AT5G40610.1  protein_id AT5G40610.1p  transcript_id AT5G40610.1  
At5g40620	chr5:016269263	0.0	W/16269263-16269655	AT5G40620.1  CDS  gene_syn MNF13.17, MNF13_17  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; Has 19 Blast hits to 19 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G40620.1p  transcript_id AT5G40620.1  protein_id AT5G40620.1p  transcript_id AT5G40620.1  
At5g40630	chr5:016272126	0.0	C/16272126-16272429,16271402-16271595	AT5G40630.1  CDS  gene_syn MNF13.18, MNF13_18  go_component chloroplast|GO:0009507||IEA  go_process protein modification process|GO:0006464||IEA  go_function molecular_function|GO:0003674||ND  product ubiquitin family protein  note ubiquitin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: chloroplast; EXPRESSED IN: inflorescence meristem, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: ubiquitin family protein (TAIR:AT5G14360.1); Has 428 Blast hits to 322 proteins in 72 species: Archae - 0; Bacteria - 56; Metazoa - 133; Fungi - 11; Plants - 117; Viruses - 1; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT5G40630.1p  transcript_id AT5G40630.1  protein_id AT5G40630.1p  transcript_id AT5G40630.1  
At5g40640	chr5:016277345	0.0	W/16277345-16277438,16277907-16278015,16278109-16278301,16278387-16278520,16278600-16278888,16278969-16279075,16279162-16279297,16279372-16279567,16279671-16279920,16280006-16280258	AT5G40640.1  CDS  gene_syn MNF13.19, MNF13_19  go_component plasma membrane|GO:0005886|17317660|IDA  product unknown protein  note unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27390.1); Has 61 Blast hits to 61 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G40640.1p  transcript_id AT5G40640.1  protein_id AT5G40640.1p  transcript_id AT5G40640.1  
At5g40645	chr5:016280875	0.0	C/16280875-16280883,16280563-16280751,16280410-16280433	AT5G40645.1  CDS  go_component cellular_component|GO:0005575||ND  go_process response to nitrate|GO:0010167||ISS  go_function molecular_function|GO:0003674||ND  product nitrate-responsive NOI protein, putative  note nitrate-responsive NOI protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to nitrate; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Defence response, Rin4 (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35655.1); Has 141 Blast hits to 140 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G40645.1p  transcript_id AT5G40645.1  protein_id AT5G40645.1p  transcript_id AT5G40645.1  
At5g40650	chr5:016281462	0.0	W/16281462-16282132,16283125-16283296	AT5G40650.1  CDS  gene_syn MNF13.170, MNF13_170, SDH2-2  gene SDH2-2  function One of three isoforms of the iron-sulfur component of the succinate dehydrogenase complex, a component of the mitochondrial respiratory chain complex II. The product of the nuclear encoded gene is imported into the mitochondrion. Expressed during germination and post-germinative growth.  go_component mitochondrion|GO:0005739|11442063|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component succinate dehydrogenase complex|GO:0045281|11442063|ISS  go_process mitochondrial electron transport, succinate to ubiquinone|GO:0006121|11442063|ISS  go_function succinate dehydrogenase activity|GO:0000104|11442063|ISS  go_function electron carrier activity|GO:0009055|11442063|ISS  product SDH2-2; electron carrier/ succinate dehydrogenase  note SDH2-2; FUNCTIONS IN: electron carrier activity, succinate dehydrogenase activity; INVOLVED IN: mitochondrial electron transport, succinate to ubiquinone; LOCATED IN: mitochondrion, succinate dehydrogenase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), Fumarate reductase, C-terminal (InterPro:IPR012285), 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), 4Fe-4S ferredoxin, iron-sulpur binding domain (InterPro:IPR017896), 4Fe-4S ferredoxin, iron-sulphur binding, conserved site (InterPro:IPR017900), Alpha-helical ferredoxin (InterPro:IPR009051), Succinate dehydrogenase/fumarate reductase iron-sulphur protein (InterPro:IPR004489); BEST Arabidopsis thaliana protein match is: SDH2-1; electron carrier/ succinate dehydrogenase (TAIR:AT3G27380.2); Has 6395 Blast hits to 6393 proteins in 1284 species: Archae - 112; Bacteria - 2981; Metazoa - 227; Fungi - 122; Plants - 98; Viruses - 0; Other Eukaryotes - 2855 (source: NCBI BLink).  protein_id AT5G40650.1p  transcript_id AT5G40650.1  protein_id AT5G40650.1p  transcript_id AT5G40650.1  
At5g40660	chr5:016284745	0.0	C/16284745-16285161,16284189-16284363,16283840-16284117,16283650-16283757	AT5G40660.1  CDS  gene_syn MNF13.22, MNF13_22  go_process proton-transporting ATP synthase complex assembly|GO:0043461||IEA  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  product ATP12 protein-related  note ATP12 protein-related; FUNCTIONS IN: protein binding; INVOLVED IN: proton-transporting ATP synthase complex assembly; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATP12, ATPase F1F0-assembly protein (InterPro:IPR011419); Has 598 Blast hits to 598 proteins in 229 species: Archae - 0; Bacteria - 222; Metazoa - 101; Fungi - 70; Plants - 22; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink).  protein_id AT5G40660.1p  transcript_id AT5G40660.1  protein_id AT5G40660.1p  transcript_id AT5G40660.1  
At5g40670	chr5:016285968	0.0	W/16285968-16286086,16286178-16286310,16286590-16286679,16286772-16286896,16286987-16287029,16287111-16287228,16287328-16287377,16287457-16287591	AT5G40670.1  CDS  gene_syn MNF13.23, MNF13_23  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product PQ-loop repeat family protein / transmembrane family protein  note PQ-loop repeat family protein / transmembrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cystinosin/ERS1p repeat (InterPro:IPR006603), Lysosomal cystine transporter (InterPro:IPR005282); Has 261 Blast hits to 261 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 89; Plants - 21; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT5G40670.1p  transcript_id AT5G40670.1  protein_id AT5G40670.1p  transcript_id AT5G40670.1  
At5g40680	chr5:016288754	0.0	W/16288754-16290001	AT5G40680.1  CDS  gene_syn MNF13.24, MNF13_24  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT3G27150.1); Has 3596 Blast hits to 2294 proteins in 110 species: Archae - 4; Bacteria - 59; Metazoa - 3095; Fungi - 5; Plants - 306; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).  protein_id AT5G40680.1p  transcript_id AT5G40680.1  protein_id AT5G40680.1p  transcript_id AT5G40680.1  
At5g40690	chr5:016290770	0.0	W/16290770-16291402	AT5G40690.1  CDS  gene_syn MNF13.25, MNF13_25  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41730.1); Has 208 Blast hits to 177 proteins in 46 species: Archae - 0; Bacteria - 4; Metazoa - 51; Fungi - 25; Plants - 42; Viruses - 6; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT5G40690.1p  transcript_id AT5G40690.1  protein_id AT5G40690.1p  transcript_id AT5G40690.1  
At5g40700	chr5:016293372	0.0	C/16293372-16293443,16292511-16293139,16292361-16292436	AT5G40700.3  CDS  gene_syn MNF13.26, MNF13_26  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27350.1); Has 253 Blast hits to 225 proteins in 52 species: Archae - 0; Bacteria - 33; Metazoa - 56; Fungi - 7; Plants - 69; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT5G40700.3p  transcript_id AT5G40700.3  protein_id AT5G40700.3p  transcript_id AT5G40700.3  
At5g40700	chr5:016293372	0.0	C/16293372-16293443,16292511-16293139,16292365-16292436,16292226-16292277,16292047-16292130	AT5G40700.1  CDS  gene_syn MNF13.26, MNF13_26  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27350.1); Has 403 Blast hits to 332 proteins in 78 species: Archae - 0; Bacteria - 36; Metazoa - 135; Fungi - 15; Plants - 73; Viruses - 7; Other Eukaryotes - 137 (source: NCBI BLink).  protein_id AT5G40700.1p  transcript_id AT5G40700.1  protein_id AT5G40700.1p  transcript_id AT5G40700.1  
At5g40700	chr5:016293372	0.0	C/16293372-16293443,16292511-16293139,16292365-16292436,16292226-16292277,16292047-16292133	AT5G40700.2  CDS  gene_syn MNF13.26, MNF13_26  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27350.1); Has 398 Blast hits to 335 proteins in 76 species: Archae - 0; Bacteria - 34; Metazoa - 127; Fungi - 15; Plants - 73; Viruses - 7; Other Eukaryotes - 142 (source: NCBI BLink).  protein_id AT5G40700.2p  transcript_id AT5G40700.2  protein_id AT5G40700.2p  transcript_id AT5G40700.2  
At5g40710	chr5:016295091	0.0	W/16295091-16295204,16295364-16295447,16295531-16295740,16295845-16295967,16296161-16296218,16296402-16296475,16296555-16296640,16296741-16296810	AT5G40710.1  CDS  gene_syn MNF13.27, MNF13_27  go_component intracellular|GO:0005622||IEA  go_component endomembrane system|GO:0012505||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT5G63280.1); Has 79 Blast hits to 77 proteins in 32 species: Archae - 0; Bacteria - 2; Metazoa - 42; Fungi - 2; Plants - 29; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G40710.1p  transcript_id AT5G40710.1  protein_id AT5G40710.1p  transcript_id AT5G40710.1  
At5g40720	chr5:016298063	0.0	W/16298063-16298192,16298272-16299893	AT5G40720.1  CDS  gene_syn MNF13.28, MNF13_28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G27330.1); Has 216 Blast hits to 216 proteins in 64 species: Archae - 0; Bacteria - 120; Metazoa - 2; Fungi - 4; Plants - 57; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT5G40720.1p  transcript_id AT5G40720.1  protein_id AT5G40720.1p  transcript_id AT5G40720.1  
At5g40730	chr5:016301153	0.0	W/16301153-16301362	AT5G40730.1  CDS  gene_syn AGP24, Arabinogalactan protein 24, AtAGP24, MNF13.250, MNF13_250  gene AGP24  function Encodes an arabinogalactan-protein (AGP24).  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  product AGP24  note AGP24; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G40730.1p  transcript_id AT5G40730.1  protein_id AT5G40730.1p  transcript_id AT5G40730.1  
At5g40740	chr5:016306156	0.0	C/16306156-16306371,16305977-16306033,16305779-16305873,16305424-16305574,16305184-16305309,16304931-16305087,16304745-16304805,16304348-16304666,16304067-16304192,16303478-16303639,16303144-16303393,16302468-16302932,16302229-16302269	AT5G40740.1  CDS  gene_syn MNF13.29, MNF13_29  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; Has 600 Blast hits to 190 proteins in 71 species: Archae - 0; Bacteria - 216; Metazoa - 38; Fungi - 50; Plants - 20; Viruses - 0; Other Eukaryotes - 276 (source: NCBI BLink).  protein_id AT5G40740.1p  transcript_id AT5G40740.1  protein_id AT5G40740.1p  transcript_id AT5G40740.1  
At5g40750	chr5:016308356	0.0	W/16308356-16308391,16308496-16308609,16308719-16309156,16309514-16309819	AT5G40750.1  CDS  gene_syn MNF13.30, MNF13_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G22000.1); Has 266 Blast hits to 241 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 266; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G40750.1p  transcript_id AT5G40750.1  protein_id AT5G40750.1p  transcript_id AT5G40750.1  
At5g40760	chr5:016311284	0.0	W/16311284-16311457,16311550-16311635,16311713-16311773,16311863-16312049,16312220-16312377,16312464-16312532,16312617-16312675,16312776-16312812,16312943-16313014,16313229-16313376,16313579-16313674,16313781-16313851,16313952-16314067,16314182-16314227,16314389-16314556	AT5G40760.1  CDS  gene_syn G6PD6, GLUCOSE-6-PHOSPHATE DEHYDROGENASE 6, K1B16.1, K1B16_1  gene G6PD6  function Encodes a cytosolic glucose-6-phosphate dehydrogenase that is insensitive to reduction by DTT and whose mRNA is expressed ubiquitously.  go_component cytosol|GO:0005829|15634201|ISS  go_process glucose metabolic process|GO:0006006|15634201|IDA  go_process glucose metabolic process|GO:0006006||ISS  go_process pentose-phosphate shunt, oxidative branch|GO:0009051|15634201|IDA  go_function glucose-6-phosphate dehydrogenase activity|GO:0004345|15634201|IDA  go_function glucose-6-phosphate dehydrogenase activity|GO:0004345||ISS  product G6PD6 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 6); glucose-6-phosphate dehydrogenase  note GLUCOSE-6-PHOSPHATE DEHYDROGENASE 6 (G6PD6); FUNCTIONS IN: glucose-6-phosphate dehydrogenase activity; INVOLVED IN: pentose-phosphate shunt, oxidative branch, glucose metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose-6-phosphate dehydrogenase (InterPro:IPR001282); BEST Arabidopsis thaliana protein match is: G6PD5 (glucose-6-phosphate dehydrogenase 5); glucose-6-phosphate dehydrogenase (TAIR:AT3G27300.3); Has 5513 Blast hits to 5500 proteins in 1288 species: Archae - 0; Bacteria - 3308; Metazoa - 670; Fungi - 121; Plants - 281; Viruses - 2; Other Eukaryotes - 1131 (source: NCBI BLink).  protein_id AT5G40760.1p  transcript_id AT5G40760.1  protein_id AT5G40760.1p  transcript_id AT5G40760.1  
At5g40770	chr5:016316310	0.0	C/16316310-16316621,16315589-16316110	AT5G40770.1  CDS  gene_syn ATPHB3, K1B16.2, K1B16_2, PROHIBITIN 3  gene ATPHB3  function prohibitin 3  go_component nucleolus|GO:0005730|15496452|IDA  go_component mitochondrion|GO:0005739|15276431|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component mitochondrion|GO:0005739|11743114|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|17883375|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process response to stress|GO:0006950|17883375|IMP  go_process mitochondrion organization|GO:0007005|17883375|IMP  go_process response to auxin stimulus|GO:0009733|17883375|IEP  go_process cell growth|GO:0016049|17883375|IMP  go_process cell division|GO:0051301|17883375|IMP  product ATPHB3 (PROHIBITIN 3)  note PROHIBITIN 3 (ATPHB3); INVOLVED IN: in 6 processes; LOCATED IN: in 6 components; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Prohibitin (InterPro:IPR000163), Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: ATPHB4 (PROHIBITIN 4) (TAIR:AT3G27280.2); Has 2839 Blast hits to 2839 proteins in 741 species: Archae - 137; Bacteria - 1214; Metazoa - 500; Fungi - 203; Plants - 151; Viruses - 11; Other Eukaryotes - 623 (source: NCBI BLink).  protein_id AT5G40770.1p  transcript_id AT5G40770.1  protein_id AT5G40770.1p  transcript_id AT5G40770.1  
At5g40780	chr5:016323823	0.0	W/16323823-16323852,16325128-16325294,16325381-16325764,16325879-16326272,16326363-16326468,16326591-16326682,16326811-16326879,16326984-16327082	AT5G40780.1  CDS  gene_syn K1B16.3, K1B16_3, LHT1, LTH1, LYSINE AND HISTIDINE SPECIFIC TRANSPORTER, LYSINE HISTIDINE TRANSPORTER 1  gene LHT1  function Encodes LHT1 (lysine histidine transporter), a high-affinity transporter for cellular amino acid uptake in both root epidermis and leaf mesophyll.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_process amino acid import|GO:0043090|16816136|IMP  go_function amino acid transmembrane transporter activity|GO:0015171|16816136|IMP  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product LHT1; amino acid transmembrane transporter  note LHT1; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport, amino acid import; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: lysine and histidine specific transporter, putative (TAIR:AT1G48640.1); Has 2827 Blast hits to 2822 proteins in 240 species: Archae - 5; Bacteria - 119; Metazoa - 1052; Fungi - 407; Plants - 888; Viruses - 0; Other Eukaryotes - 356 (source: NCBI BLink).  protein_id AT5G40780.1p  transcript_id AT5G40780.1  protein_id AT5G40780.1p  transcript_id AT5G40780.1  
At5g40780	chr5:016323823	0.0	W/16323823-16323852,16325131-16325294,16325381-16325764,16325879-16326272,16326363-16326468,16326591-16326682,16326811-16326879,16326984-16327082	AT5G40780.2  CDS  gene_syn K1B16.3, K1B16_3, LHT1, LTH1, LYSINE AND HISTIDINE SPECIFIC TRANSPORTER, LYSINE HISTIDINE TRANSPORTER 1  gene LHT1  function Encodes LHT1 (lysine histidine transporter), a high-affinity transporter for cellular amino acid uptake in both root epidermis and leaf mesophyll.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_process amino acid import|GO:0043090|16816136|IMP  go_function amino acid transmembrane transporter activity|GO:0015171|16816136|IMP  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product LHT1; amino acid transmembrane transporter  note LHT1; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport, amino acid import; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: lysine and histidine specific transporter, putative (TAIR:AT1G48640.1); Has 2836 Blast hits to 2831 proteins in 240 species: Archae - 5; Bacteria - 119; Metazoa - 1051; Fungi - 417; Plants - 888; Viruses - 0; Other Eukaryotes - 356 (source: NCBI BLink).  protein_id AT5G40780.2p  transcript_id AT5G40780.2  protein_id AT5G40780.2p  transcript_id AT5G40780.2  
At5g40790	chr5:016330115	0.0	C/16330115-16331026	AT5G40790.1  CDS  gene_syn MHK7.2, MHK7_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27250.1); Has 34 Blast hits to 34 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G40790.1p  transcript_id AT5G40790.1  protein_id AT5G40790.1p  transcript_id AT5G40790.1  
At5g40800	chr5:016334810	0.0	C/16334810-16335628	AT5G40800.1  CDS  gene_syn MHK7.3, MHK7_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27250.1); Has 36 Blast hits to 36 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G40800.1p  transcript_id AT5G40800.1  protein_id AT5G40800.1p  transcript_id AT5G40800.1  
At5g40810	chr5:016340200	0.0	W/16340200-16340259,16340589-16340800,16340909-16341188,16341271-16341342,16341433-16341549,16341670-16341735,16342211-16342327	AT5G40810.1  CDS  gene_syn MHK7.4, MHK7_4  go_component vacuole|GO:0005773|15215502|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial respiratory chain|GO:0005746||ISS  go_component mitochondrial respiratory chain complex III|GO:0005750|18189341|IDA  go_function electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity|GO:0045153||ISS  product cytochrome c1, putative  note cytochrome c1, putative; FUNCTIONS IN: electron carrier activity, iron ion binding, heme binding, electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity; LOCATED IN: mitochondrial respiratory chain, mitochondrion, vacuole, mitochondrial respiratory chain complex III, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c1 (InterPro:IPR002326), Cytochrome c, monohaem (InterPro:IPR009056); BEST Arabidopsis thaliana protein match is: cytochrome c1, putative (TAIR:AT3G27240.1); Has 2945 Blast hits to 2945 proteins in 515 species: Archae - 0; Bacteria - 722; Metazoa - 171; Fungi - 166; Plants - 63; Viruses - 0; Other Eukaryotes - 1823 (source: NCBI BLink).  protein_id AT5G40810.1p  transcript_id AT5G40810.1  protein_id AT5G40810.1p  transcript_id AT5G40810.1  
At5g40810	chr5:016340670	0.0	W/16340670-16340800,16340909-16341188,16341271-16341342,16341433-16341549,16341670-16341735,16342211-16342327	AT5G40810.2  CDS  gene_syn MHK7.4, MHK7_4  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial respiratory chain|GO:0005746||ISS  go_component mitochondrial respiratory chain complex III|GO:0005750|18189341|IDA  go_function electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity|GO:0045153||ISS  product cytochrome c1, putative  note cytochrome c1, putative; FUNCTIONS IN: electron carrier activity, iron ion binding, heme binding, electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity; LOCATED IN: mitochondrial respiratory chain, mitochondrion, mitochondrial respiratory chain complex III; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c1 (InterPro:IPR002326), Cytochrome c, monohaem (InterPro:IPR009056); BEST Arabidopsis thaliana protein match is: cytochrome c1, putative (TAIR:AT3G27240.1).  protein_id AT5G40810.2p  transcript_id AT5G40810.2  protein_id AT5G40810.2p  transcript_id AT5G40810.2  
At5g40820	chr5:016353667	0.0	C/16353667-16353847,16353420-16353564,16353232-16353344,16352805-16353118,16352566-16352687,16352192-16352336,16351512-16352066,16351360-16351432,16350938-16351241,16349569-16350816,16345860-16349232,16345204-16345773,16344393-16345013,16344109-16344303,16343860-16344009	AT5G40820.1  CDS  gene_syn ATATR, ATR, ATRAD3, Ataxia telangiectasia-mutated and Rad3-related, MHK7.5, MHK7_5  gene ATRAD3  function Encodes a Arabidopsis ortholog of the ATR protein kinase that is involved in a wide range of responses to DNA damage and plays a central role in cell-cycle regulation. Dominant loss of function alleles identified as suppressors of ALS also exhibit increased tolerance to aluminum. This may be due to the inhibition of terminal differentiation of the root apex upon exposure to Al.  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function binding|GO:0005488||IEA  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_process DNA repair|GO:0006281|18435824|IGI  go_process telomere maintenance via telomerase|GO:0007004|10611295|IMP  go_process meiosis|GO:0007126|18435824|IGI  go_process response to aluminum ion|GO:0010044|18835170|IMP  go_process response to gamma radiation|GO:0010332|17227549|IMP  go_process regulation of telomere maintenance|GO:0032204|16166376|IGI  go_process multicellular organism reproduction|GO:0032504|16166376|IGI  go_process regulation of chromosome organization|GO:0033044|16166376|IGI  go_process telomere maintenance in response to DNA damage|GO:0043247|16166376|TAS  go_function inositol or phosphatidylinositol kinase activity|GO:0004428||ISS  product ATRAD3; binding / inositol or phosphatidylinositol kinase/ phosphotransferase, alcohol group as acceptor / protein serine/threonine kinase  note ATRAD3; FUNCTIONS IN: protein serine/threonine kinase activity, inositol or phosphatidylinositol kinase activity, binding, phosphotransferase activity, alcohol group as acceptor; INVOLVED IN: in 9 processes; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3- and 4-kinase, catalytic (InterPro:IPR000403), UME (InterPro:IPR012993), Protein kinase-like (InterPro:IPR011009), PIK-related kinase, FAT (InterPro:IPR003151), Armadillo-type fold (InterPro:IPR016024), PIK-related kinase (InterPro:IPR014009), PIK-related kinase, FATC (InterPro:IPR003152), Phosphatidylinositol 3- and 4-kinase, conserved site (InterPro:IPR018936); BEST Arabidopsis thaliana protein match is: ATM (ATAXIA-TELANGIECTASIA MUTATED); 1-phosphatidylinositol-3-phosphate 5-kinase (TAIR:AT3G48190.1); Has 2510 Blast hits to 2187 proteins in 183 species: Archae - 0; Bacteria - 2; Metazoa - 1069; Fungi - 710; Plants - 164; Viruses - 0; Other Eukaryotes - 565 (source: NCBI BLink).  protein_id AT5G40820.1p  transcript_id AT5G40820.1  protein_id AT5G40820.1p  transcript_id AT5G40820.1  
At5g40830	chr5:016354611	0.0	C/16354611-16355855	AT5G40830.1  CDS  gene_syn MHK7.6, MHK7_6  go_process metabolic process|GO:0008152||IEA  go_function methyltransferase activity|GO:0008168||IEA  product methyltransferase  note methyltransferase; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27230.1); Has 301 Blast hits to 268 proteins in 27 species: Archae - 0; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 284; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G40830.1p  transcript_id AT5G40830.1  protein_id AT5G40830.1p  transcript_id AT5G40830.1  
At5g40830	chr5:016354611	0.0	C/16354611-16355855	AT5G40830.2  CDS  gene_syn MHK7.6, MHK7_6  go_process metabolic process|GO:0008152||IEA  go_function methyltransferase activity|GO:0008168||IEA  product methyltransferase  note methyltransferase; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27230.1); Has 301 Blast hits to 268 proteins in 27 species: Archae - 0; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 284; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G40830.2p  transcript_id AT5G40830.2  protein_id AT5G40830.2p  transcript_id AT5G40830.2  
At5g40840	chr5:016362787	0.0	C/16362787-16362823,16362669-16362706,16362544-16362590,16362316-16362386,16361486-16362208,16361295-16361406,16361073-16361209,16360417-16361000,16360268-16360304,16360024-16360045,16359804-16359936,16359611-16359706	AT5G40840.3  CDS  gene_syn AtRAD21.1, MHK7.7, MHK7_7, SYN2, Sister chromatid cohesion 1 (SCC1) protein homolog 2  gene SYN2  function Cohesion family protein SYN2 (SYN2).  go_component nuclear cohesin complex|GO:0000798|11410371|ISS  go_component nucleus|GO:0005634|11410371|ISS  go_process double-strand break repair|GO:0006302|19070688|IMP  go_process mitosis|GO:0007067|11410371|IEP  go_function molecular_function|GO:0003674||ND  product SYN2  note SYN2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: double-strand break repair, mitosis; LOCATED IN: nuclear cohesin complex, nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Rad21/Rec8 like protein, C-terminal (InterPro:IPR006909); BEST Arabidopsis thaliana protein match is: SYN4 (SISTER CHROMATID COHESION 1 PROTEIN 4) (TAIR:AT5G16270.1); Has 415 Blast hits to 396 proteins in 103 species: Archae - 0; Bacteria - 26; Metazoa - 211; Fungi - 48; Plants - 63; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT5G40840.3p  transcript_id AT5G40840.3  protein_id AT5G40840.3p  transcript_id AT5G40840.3  
At5g40840	chr5:016363599	0.0	C/16363599-16363722,16362787-16363060,16362669-16362706,16362544-16362590,16362316-16362386,16361486-16362243,16361295-16361406,16361073-16361209,16360417-16361000,16360268-16360301,16360024-16360045,16359804-16359936,16359611-16359706	AT5G40840.1  CDS  gene_syn AtRAD21.1, MHK7.7, MHK7_7, SYN2, Sister chromatid cohesion 1 (SCC1) protein homolog 2  gene SYN2  function Cohesion family protein SYN2 (SYN2).  go_component nuclear cohesin complex|GO:0000798|11410371|ISS  go_component nucleus|GO:0005634|11410371|ISS  go_process double-strand break repair|GO:0006302|19070688|IMP  go_process mitosis|GO:0007067|11410371|IEP  go_function molecular_function|GO:0003674||ND  product SYN2  note SYN2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: double-strand break repair, mitosis; LOCATED IN: nuclear cohesin complex, nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Rad21/Rec8 like protein, C-terminal (InterPro:IPR006909), Rad21/Rec8 like protein, N-terminal (InterPro:IPR006910); BEST Arabidopsis thaliana protein match is: SYN4 (SISTER CHROMATID COHESION 1 PROTEIN 4) (TAIR:AT5G16270.1); Has 943 Blast hits to 739 proteins in 179 species: Archae - 0; Bacteria - 63; Metazoa - 421; Fungi - 158; Plants - 127; Viruses - 2; Other Eukaryotes - 172 (source: NCBI BLink).  protein_id AT5G40840.1p  transcript_id AT5G40840.1  protein_id AT5G40840.1p  transcript_id AT5G40840.1  
At5g40840	chr5:016363599	0.0	C/16363599-16363722,16362787-16363060,16362669-16362706,16362544-16362590,16362316-16362386,16361486-16362243,16361295-16361406,16361073-16361209,16360417-16361000,16360268-16360304,16360024-16360045,16359804-16359936,16359611-16359706	AT5G40840.2  CDS  gene_syn AtRAD21.1, MHK7.7, MHK7_7, SYN2, Sister chromatid cohesion 1 (SCC1) protein homolog 2  gene SYN2  function Cohesion family protein SYN2 (SYN2).  go_component nuclear cohesin complex|GO:0000798|11410371|ISS  go_component nucleus|GO:0005634|11410371|ISS  go_process double-strand break repair|GO:0006302|19070688|IMP  go_process mitosis|GO:0007067|11410371|IEP  go_function molecular_function|GO:0003674||ND  product SYN2  note SYN2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: double-strand break repair, mitosis; LOCATED IN: nuclear cohesin complex, nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Rad21/Rec8 like protein, C-terminal (InterPro:IPR006909), Rad21/Rec8 like protein, N-terminal (InterPro:IPR006910); BEST Arabidopsis thaliana protein match is: SYN4 (SISTER CHROMATID COHESION 1 PROTEIN 4) (TAIR:AT5G16270.1); Has 922 Blast hits to 719 proteins in 177 species: Archae - 0; Bacteria - 59; Metazoa - 415; Fungi - 155; Plants - 128; Viruses - 2; Other Eukaryotes - 163 (source: NCBI BLink).  protein_id AT5G40840.2p  transcript_id AT5G40840.2  protein_id AT5G40840.2p  transcript_id AT5G40840.2  
At5g40847	chr5:016365725	0.0	C/16365725-16365841	AT5G40847.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G40847.1p  transcript_id AT5G40847.1  protein_id AT5G40847.1p  transcript_id AT5G40847.1  
At5g40850	chr5:016367205	0.0	W/16367205-16367738,16367843-16367920,16368007-16368076,16368204-16368481,16368575-16368724	AT5G40850.1  CDS  gene_syn MHK7.8, MHK7_8, UPM1, UROPHORPHYRIN METHYLASE 1  gene UPM1  function Encodes a urophorphyrin III methylase that catalyzes S-adenosyl-L-methionine-dependent transmethylation in a multistep process involving the formation of a covalently linked complex with S-adenosyl-L-methionine.  go_component chloroplast|GO:0009507|9006913|IDA  go_process porphyrin biosynthetic process|GO:0006779||ISS  go_process siroheme biosynthetic process|GO:0019354|9006913|IDA  go_function uroporphyrin-III C-methyltransferase activity|GO:0004851|9006913|IDA  go_function uroporphyrin-III C-methyltransferase activity|GO:0004851||ISS  product UPM1 (UROPHORPHYRIN METHYLASE 1); uroporphyrin-III C-methyltransferase  note UROPHORPHYRIN METHYLASE 1 (UPM1); FUNCTIONS IN: uroporphyrin-III C-methyltransferase activity; INVOLVED IN: siroheme biosynthetic process, porphyrin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetrapyrrole methylase (InterPro:IPR000878), Tetrapyrrole methylase, subdomain 1 (InterPro:IPR014777), Uroporphyrin-III C-methyltransferase, plant (InterPro:IPR012383), Uroporphyrin-III C-methyltransferase, C-terminal (InterPro:IPR006366), Tetrapyrrole methylase, subdomain 2 (InterPro:IPR014776), Uroporphiryn-III C-methyltransferase, conserved site (InterPro:IPR003043); Has 7032 Blast hits to 6957 proteins in 1104 species: Archae - 395; Bacteria - 5399; Metazoa - 3; Fungi - 97; Plants - 48; Viruses - 0; Other Eukaryotes - 1090 (source: NCBI BLink).  protein_id AT5G40850.1p  transcript_id AT5G40850.1  protein_id AT5G40850.1p  transcript_id AT5G40850.1  
At5g40855	chr5:016369114	0.0	C/16369114-16369350	AT5G40855.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G40855.1p  transcript_id AT5G40855.1  protein_id AT5G40855.1p  transcript_id AT5G40855.1  
At5g40860	chr5:016370470	0.0	W/16370470-16370614,16370709-16370822,16371419-16371502,16371588-16371985	AT5G40860.1  CDS  gene_syn MHK7.9, MHK7_9  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27210.1); Has 38 Blast hits to 38 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G40860.1p  transcript_id AT5G40860.1  protein_id AT5G40860.1p  transcript_id AT5G40860.1  
At5g40870	chr5:016375021	0.0	W/16375021-16375216,16375474-16375565,16375660-16375729,16375840-16375958,16376109-16376205,16376399-16376478,16376791-16376985,16377070-16377153,16377238-16377298,16377441-16377501,16377653-16377746,16377844-16377916,16378016-16378098,16378229-16378384	AT5G40870.1  CDS  gene_syn AtUK/UPRT1, MHK7.10, MHK7_10, Uridine kinase/Uracil phosphoribosyltransferase 1  gene AtUK/UPRT1  function Encodes a protein that appears to possess both uridine kinase and uracil phosphoribosyltransferase activities.  go_process metabolic process|GO:0008152||IEA  go_component cytoplasm|GO:0005737|17143579|IDA  go_process biosynthetic process|GO:0009058||ISS  go_function uracil phosphoribosyltransferase activity|GO:0004845|17143579|IGI  go_function uracil phosphoribosyltransferase activity|GO:0004845||ISS  go_function uridine kinase activity|GO:0004849|17143579|IGI  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product AtUK/UPRT1 (Uridine kinase/Uracil phosphoribosyltransferase 1); ATP binding / kinase/ uracil phosphoribosyltransferase/ uridine kinase  note Uridine kinase/Uracil phosphoribosyltransferase 1 (AtUK/UPRT1); FUNCTIONS IN: uridine kinase activity, uracil phosphoribosyltransferase activity, kinase activity, ATP binding; INVOLVED IN: biosynthetic process, metabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083), Uridine kinase (InterPro:IPR000764); BEST Arabidopsis thaliana protein match is: uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative (TAIR:AT3G27190.1); Has 7351 Blast hits to 7342 proteins in 1436 species: Archae - 126; Bacteria - 4965; Metazoa - 452; Fungi - 327; Plants - 367; Viruses - 2; Other Eukaryotes - 1112 (source: NCBI BLink).  protein_id AT5G40870.1p  transcript_id AT5G40870.1  protein_id AT5G40870.1p  transcript_id AT5G40870.1  
At5g40880	chr5:016379481	0.0	W/16379481-16380230,16380337-16380438,16380548-16380700,16380792-16381205	AT5G40880.1  CDS  gene_syn MHK7.11, MHK7_11  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_function nucleic acid binding|GO:0003676||ISS  product WD-40 repeat family protein / zfwd3 protein (ZFWD3)  note WD-40 repeat family protein / zfwd3 protein (ZFWD3); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein / zfwd4 protein (ZFWD4) (TAIR:AT5G49200.1); Has 19354 Blast hits to 11181 proteins in 423 species: Archae - 14; Bacteria - 2857; Metazoa - 8028; Fungi - 4101; Plants - 1585; Viruses - 0; Other Eukaryotes - 2769 (source: NCBI BLink).  protein_id AT5G40880.1p  transcript_id AT5G40880.1  protein_id AT5G40880.1p  transcript_id AT5G40880.1  
At5g40890	chr5:016383660	0.0	C/16383660-16383821,16383029-16383561,16381823-16382954,16381645-16381749	AT5G40890.2  CDS  gene_syn ATCLC-A, CHLORIDE CHANNEL A, CHLORIDE CHANNEL-A, CLC-A, CLCA  gene ATCLC-A  function Encodes a member of the voltage-dependent chloride channel. Also functions as a NO3-/H+ exchanger that serves to accumulate nitrate nutrient in vacuoles. Mutants homozygous for the T-DNA insertion mutation have reduced nitrate uptake capacity in high nitrate environment and exhibit hypersensitivity to chlorate.  go_component intracellular|GO:0005622|8969232|TAS  go_process chloride transport|GO:0006821|19261613|IDA  go_process chloride transport|GO:0006821||ISS  go_process response to nitrate|GO:0010167|10758477|IMP  go_process nitrate transport|GO:0015706|19261613|IDA  go_function voltage-gated chloride channel activity|GO:0005247||ISS  go_function anion channel activity|GO:0005253||ISS  go_function nitrate transmembrane transporter activity|GO:0015112|19261613|IDA  product ATCLC-A (CHLORIDE CHANNEL A); anion channel/ nitrate transmembrane transporter/ voltage-gated chloride channel  note CHLORIDE CHANNEL A (ATCLC-A); FUNCTIONS IN: anion channel activity, nitrate transmembrane transporter activity, voltage-gated chloride channel activity; INVOLVED IN: nitrate transport, chloride transport, response to nitrate; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chloride channel, core (InterPro:IPR014743), Chloride channel, voltage gated (InterPro:IPR001807), Chloride channel plant CLC (InterPro:IPR002251), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CLC-B (CHLORIDE CHANNEL B); anion channel/ voltage-gated chloride channel (TAIR:AT3G27170.1); Has 4195 Blast hits to 3993 proteins in 960 species: Archae - 70; Bacteria - 2322; Metazoa - 868; Fungi - 213; Plants - 185; Viruses - 0; Other Eukaryotes - 537 (source: NCBI BLink).  protein_id AT5G40890.2p  transcript_id AT5G40890.2  protein_id AT5G40890.2p  transcript_id AT5G40890.2  
At5g40890	chr5:016384821	0.0	C/16384821-16384999,16383930-16384130,16383660-16383837,16383029-16383561,16381823-16382954,16381645-16381749	AT5G40890.1  CDS  gene_syn ATCLC-A, CHLORIDE CHANNEL A, CHLORIDE CHANNEL-A, CLC-A, CLCA  gene ATCLC-A  function Encodes a member of the voltage-dependent chloride channel. Also functions as a NO3-/H+ exchanger that serves to accumulate nitrate nutrient in vacuoles. Mutants homozygous for the T-DNA insertion mutation have reduced nitrate uptake capacity in high nitrate environment and exhibit hypersensitivity to chlorate.  go_component intracellular|GO:0005622|8969232|TAS  go_process chloride transport|GO:0006821|19261613|IDA  go_process chloride transport|GO:0006821||ISS  go_process response to nitrate|GO:0010167|10758477|IMP  go_process nitrate transport|GO:0015706|19261613|IDA  go_function voltage-gated chloride channel activity|GO:0005247||ISS  go_function anion channel activity|GO:0005253||ISS  go_function nitrate transmembrane transporter activity|GO:0015112|19261613|IDA  product ATCLC-A (CHLORIDE CHANNEL A); anion channel/ nitrate transmembrane transporter/ voltage-gated chloride channel  note CHLORIDE CHANNEL A (ATCLC-A); FUNCTIONS IN: anion channel activity, nitrate transmembrane transporter activity, voltage-gated chloride channel activity; INVOLVED IN: nitrate transport, chloride transport, response to nitrate; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chloride channel, core (InterPro:IPR014743), Chloride channel, voltage gated (InterPro:IPR001807), Chloride channel plant CLC (InterPro:IPR002251), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CLC-B (CHLORIDE CHANNEL B); anion channel/ voltage-gated chloride channel (TAIR:AT3G27170.1); Has 4268 Blast hits to 4063 proteins in 970 species: Archae - 74; Bacteria - 2366; Metazoa - 867; Fungi - 213; Plants - 195; Viruses - 0; Other Eukaryotes - 553 (source: NCBI BLink).  protein_id AT5G40890.1p  transcript_id AT5G40890.1  protein_id AT5G40890.1p  transcript_id AT5G40890.1  
At5g40900	chr5:016391847	0.0	W/16391847-16392002,16392086-16392433,16392911-16393375	AT5G40900.1  CDS  gene_syn MHK7.13, MHK7_13  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19970.1); Has 164 Blast hits to 161 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 155; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT5G40900.1p  transcript_id AT5G40900.1  protein_id AT5G40900.1p  transcript_id AT5G40900.1  
At5g40910	chr5:016395507	0.0	W/16395507-16395973,16396098-16397169,16397256-16397534,16397633-16399129	AT5G40910.1  CDS  gene_syn MHK7.14, MHK7_14  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G41550.1); Has 13016 Blast hits to 10495 proteins in 433 species: Archae - 10; Bacteria - 625; Metazoa - 839; Fungi - 19; Plants - 11155; Viruses - 6; Other Eukaryotes - 362 (source: NCBI BLink).  protein_id AT5G40910.1p  transcript_id AT5G40910.1  protein_id AT5G40910.1p  transcript_id AT5G40910.1  
At5g40920	chr5:016400654	0.0	W/16400654-16404325	AT5G40920.1  pseudogenic_transcript  pseudo  gene_syn MHK7.15, MHK7_15  note pseudogene, disease resistance protein (TIR-NBS-LRR class), putative, domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein.  
At5g40930	chr5:016404523	0.0	W/16404523-16404618,16404710-16404782,16404964-16405133,16405235-16405282,16405581-16405634,16405703-16405825	AT5G40930.1  CDS  gene_syn MMG1.2, MMG1_2, TOM20-4, TRANSLOCASE OF OUTER MEMBRANE 20-4  gene TOM20-4  function Form of TOM20, which is a component of the TOM complex involved in transport of nuclear-encoded mitochondrial proteins  go_component plasma membrane|GO:0005886|17151019|IDA  go_component mitochondrial outer membrane translocase complex|GO:0005742|11161051|IDA  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744|11161051|TAS  go_process protein targeting to mitochondrion|GO:0006626|11161051|TAS  go_process protein targeting to mitochondrion|GO:0006626|17981999|IMP  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450|11161051|TAS  product TOM20-4 (TRANSLOCASE OF OUTER MEMBRANE 20-4); P-P-bond-hydrolysis-driven protein transmembrane transporter  note TRANSLOCASE OF OUTER MEMBRANE 20-4 (TOM20-4); FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein targeting to mitochondrion; LOCATED IN: plasma membrane, mitochondrial outer membrane translocase complex, mitochondrial inner membrane presequence translocase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide region (InterPro:IPR013026), Plant specific mitochondrial import receptor subunit TOM20 (InterPro:IPR010547); BEST Arabidopsis thaliana protein match is: TOM20-3 (TRANSLOCASE OF OUTER MEMBRANE 20 KDA SUBUNIT 3); P-P-bond-hydrolysis-driven protein transmembrane transporter (TAIR:AT3G27080.1); Has 53 Blast hits to 53 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G40930.1p  transcript_id AT5G40930.1  protein_id AT5G40930.1p  transcript_id AT5G40930.1  
At5g40940	chr5:016406656	0.0	C/16406656-16407930	AT5G40940.1  CDS  gene_syn FLA20, MMG1.3, MMG1_3, PUTATIVE FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 20  gene FLA20  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product FLA20 (PUTATIVE FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 20)  note PUTATIVE FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 20 (FLA20); FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); Has 49 Blast hits to 45 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 44; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G40940.1p  transcript_id AT5G40940.1  protein_id AT5G40940.1p  transcript_id AT5G40940.1  
At5g40942	chr5:016408166	0.0	W/16408166-16409165	AT5G40942.1  pseudogenic_transcript  pseudo  gene_syn RIBONUCLEOTIDE REDUCTASE 2B, RNR2B  gene RNR2B  function pseudogene of ribonucleoside-diphosphate reductase small chain/ ribonucleotide reductase  
At5g40945	chr5:016410585	0.0	W/16410585-16410665	AT5G40945.1  tRNA  gene_syn 67756.TRNA-LEU-1, 67757.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: AAG)  transcript_id AT5G40945.1  
At5g40950	chr5:016410866	0.0	W/16410866-16411168,16411468-16411569,16411654-16411845	AT5G40950.1  CDS  gene_syn MMG1.7, RIBOSOMAL PROTEIN LARGE SUBUNIT 27, RPL27  gene RPL27  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27); structural constituent of ribosome  note RIBOSOMAL PROTEIN LARGE SUBUNIT 27 (RPL27); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: thylakoid, ribosome, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L27 (InterPro:IPR001684), Ribosomal protein L27, conserved site (InterPro:IPR018261); BEST Arabidopsis thaliana protein match is: ribosomal protein L27 family protein (TAIR:AT5G15220.1); Has 5099 Blast hits to 5099 proteins in 1536 species: Archae - 0; Bacteria - 2975; Metazoa - 83; Fungi - 94; Plants - 70; Viruses - 0; Other Eukaryotes - 1877 (source: NCBI BLink).  protein_id AT5G40950.1p  transcript_id AT5G40950.1  protein_id AT5G40950.1p  transcript_id AT5G40950.1  
At5g40960	chr5:016412745	0.0	C/16412745-16412951	AT5G40960.1  CDS  gene_syn MEE6.3, MEE6_3  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48660.1); Has 166 Blast hits to 165 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 166; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G40960.1p  transcript_id AT5G40960.1  protein_id AT5G40960.1p  transcript_id AT5G40960.1  
At5g40970	chr5:016414081	0.0	W/16414081-16414290	AT5G40970.1  CDS  gene_syn MEE6.4, MEE6_4  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27030.1); Has 168 Blast hits to 167 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 168; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G40970.1p  transcript_id AT5G40970.1  protein_id AT5G40970.1p  transcript_id AT5G40970.1  
At5g40980	chr5:016414877	0.0	C/16414877-16415086	AT5G40980.1  CDS  gene_syn MEE6.5, MEE6_5  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27027.1); Has 168 Blast hits to 167 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 168; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G40980.1p  transcript_id AT5G40980.1  protein_id AT5G40980.1p  transcript_id AT5G40980.1  
At5g40981	chr5:016415857	0.0	C/16415857-16415952	AT5G40981.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G40981.1p  transcript_id AT5G40981.1  protein_id AT5G40981.1p  transcript_id AT5G40981.1  
At5g40990	chr5:016418920	0.0	W/16418920-16419187,16419262-16419389,16419512-16419742,16419830-16420085,16420159-16420400	AT5G40990.1  CDS  gene_syn GDSL LIPASE1, GLIP1, MEE6.6, MEE6_6  gene GLIP1  function Component of plant resistance. Contains lipase signature motif and GDSL domain. Directly interferes with the fungal infection process by acting on fungal cell walls through its action as a antimicrobial compound. Critical component for both local and systemic resistance responses in the incompatible interaction with Alternaria brassicicola in the ethylene-dependent pathway.  go_component extracellular space|GO:0005615|16126835|IDA  go_process response to fungus|GO:0009620|16126835|IMP  go_process response to salicylic acid stimulus|GO:0009751|16126835|IEP  go_process induced systemic resistance, ethylene mediated signaling pathway|GO:0009866|16126835|IMP  go_process defense response to bacterium|GO:0042742|19077166|IMP  go_process defense response to fungus|GO:0050832|16126835|IMP  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298|16126835|IDA  go_function lipase activity|GO:0016298|16126835|ISS  product GLIP1 (GDSL LIPASE1); carboxylesterase/ lipase  note GDSL LIPASE1 (GLIP1); FUNCTIONS IN: lipase activity, carboxylesterase activity; INVOLVED IN: defense response to bacterium, defense response to fungus, response to fungus, induced systemic resistance, ethylene mediated signaling pathway, response to salicylic acid stimulus; LOCATED IN: extracellular space; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GLIP2; arylesterase/ carboxylesterase/ lipase (TAIR:AT1G53940.1); Has 1665 Blast hits to 1644 proteins in 102 species: Archae - 0; Bacteria - 97; Metazoa - 1; Fungi - 22; Plants - 1530; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT5G40990.1p  transcript_id AT5G40990.1  protein_id AT5G40990.1p  transcript_id AT5G40990.1  
At5g41000	chr5:016420910	0.0	W/16420910-16421261,16421490-16421662,16421763-16421860,16421954-16422091,16422192-16422381,16422494-16422626,16422769-16423697	AT5G41000.1  CDS  gene_syn MEE6.7, MEE6_7, YELLOW STRIPE LIKE 4, YSL4  gene YSL4  function Arabidopsis thaliana metal-nicotianamine transporter YSL4  go_component plasma membrane|GO:0005886|17151019|IDA  go_process oligopeptide transport|GO:0006857||ISS  go_function oligopeptide transporter activity|GO:0015198||ISS  product YSL4 (YELLOW STRIPE LIKE 4); oligopeptide transporter  note YELLOW STRIPE LIKE 4 (YSL4); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: plasma membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: YSL6 (YELLOW STRIPE LIKE 6); oligopeptide transporter (TAIR:AT3G27020.1); Has 858 Blast hits to 826 proteins in 252 species: Archae - 12; Bacteria - 378; Metazoa - 0; Fungi - 137; Plants - 243; Viruses - 1; Other Eukaryotes - 87 (source: NCBI BLink).  protein_id AT5G41000.1p  transcript_id AT5G41000.1  protein_id AT5G41000.1p  transcript_id AT5G41000.1  
At5g41010	chr5:016424050	0.0	W/16424050-16424089,16424473-16424565,16424899-16424921	AT5G41010.1  CDS  gene_syn MEE6.8, MEE6_8, NRPB12, NRPD12, NRPE12  gene NRPB12  function Non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.  go_process transcription|GO:0006350||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_component DNA-directed RNA polymerase IV complex|GO:0000418|19110459|IPI  go_component nucleus|GO:0005634||ISS  go_component DNA-directed RNA polymerase II, core complex|GO:0005665|19110459|IPI  go_component DNA-directed RNA polymerase V complex|GO:0080137|19110459|IDA  go_component DNA-directed RNA polymerase V complex|GO:0080137|19110459|IPI  go_process transcription|GO:0006350||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product NRPB12; DNA binding / DNA-directed RNA polymerase  note NRPB12; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: DNA-directed RNA polymerase V complex, nucleus, DNA-directed RNA polymerase II, core complex, DNA-directed RNA polymerase IV complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase Rbp10 (InterPro:IPR006591); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerases I, II, and III 7 kDa subunit, putative (TAIR:AT1G53690.1); Has 267 Blast hits to 267 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 92; Fungi - 112; Plants - 28; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT5G41010.1p  transcript_id AT5G41010.1  protein_id AT5G41010.1p  transcript_id AT5G41010.1  
At5g41020	chr5:016425883	0.0	C/16425883-16427649	AT5G41020.1  CDS  gene_syn MEE6.9, MEE6_9  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), MYB-like (InterPro:IPR017877), Myb transcription factor (InterPro:IPR015495); Has 98187 Blast hits to 47692 proteins in 1520 species: Archae - 162; Bacteria - 7831; Metazoa - 42063; Fungi - 10642; Plants - 4096; Viruses - 488; Other Eukaryotes - 32905 (source: NCBI BLink).  protein_id AT5G41020.1p  transcript_id AT5G41020.1  protein_id AT5G41020.1p  transcript_id AT5G41020.1  
At5g41030	chr5:016428706	0.0	W/16428706-16429437	AT5G41030.1  CDS  gene_syn MEE6.10, MEE6_10  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product TCP family transcription factor, putative  note TCP family transcription factor, putative; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: AT-TCP20; transcription factor (TAIR:AT3G27010.1); Has 186 Blast hits to 186 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 185; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G41030.1p  transcript_id AT5G41030.1  protein_id AT5G41030.1p  transcript_id AT5G41030.1  
At5g41040	chr5:016431448	0.0	W/16431448-16431450,16431537-16431858,16431945-16432120,16432214-16433086	AT5G41040.1  CDS  gene_syn MEE6.11, MEE6_11  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT5G63560.1); Has 1518 Blast hits to 1504 proteins in 155 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 170; Plants - 1344; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G41040.1p  transcript_id AT5G41040.1  protein_id AT5G41040.1p  transcript_id AT5G41040.1  
At5g41040	chr5:016431582	0.0	W/16431582-16431858,16431945-16432120,16432214-16433086	AT5G41040.2  CDS  gene_syn MEE6.11, MEE6_11  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT5G63560.1); Has 1518 Blast hits to 1504 proteins in 155 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 170; Plants - 1344; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G41040.2p  transcript_id AT5G41040.2  protein_id AT5G41040.2p  transcript_id AT5G41040.2  
At5g41050	chr5:016433905	0.0	C/16433905-16434076,16433478-16433824	AT5G41050.1  CDS  gene_syn MEE6.12, MEE6_12  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26960.1); Has 71 Blast hits to 71 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G41050.1p  transcript_id AT5G41050.1  protein_id AT5G41050.1p  transcript_id AT5G41050.1  
At5g41060	chr5:016435602	0.0	W/16435602-16435685,16436143-16436325,16436403-16436693,16436781-16437014,16437100-16437540	AT5G41060.1  CDS  gene_syn MEE6.13, MEE6_13  go_component plasma membrane|GO:0005886|17317660|IDA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger (DHHC type) family protein  note zinc finger (DHHC type) family protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: zinc finger (DHHC type) family protein (TAIR:AT3G26935.1); Has 3985 Blast hits to 3975 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 1952; Fungi - 533; Plants - 408; Viruses - 0; Other Eukaryotes - 1092 (source: NCBI BLink).  protein_id AT5G41060.1p  transcript_id AT5G41060.1  protein_id AT5G41060.1p  transcript_id AT5G41060.1  
At5g41060	chr5:016435949	0.0	W/16435949-16435987,16436143-16436325,16436403-16436693,16436781-16437014,16437100-16437540	AT5G41060.2  CDS  gene_syn MEE6.13, MEE6_13  go_component plasma membrane|GO:0005886|17317660|IDA  go_process multicellular organismal development|GO:0007275||IEA  go_function receptor activity|GO:0004872||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger (DHHC type) family protein  note zinc finger (DHHC type) family protein; FUNCTIONS IN: receptor activity, zinc ion binding; INVOLVED IN: multicellular organismal development; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594), Plexin-like fold (InterPro:IPR016201); BEST Arabidopsis thaliana protein match is: zinc finger (DHHC type) family protein (TAIR:AT3G26935.1); Has 3979 Blast hits to 3971 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 1951; Fungi - 533; Plants - 408; Viruses - 0; Other Eukaryotes - 1087 (source: NCBI BLink).  protein_id AT5G41060.2p  transcript_id AT5G41060.2  protein_id AT5G41060.2p  transcript_id AT5G41060.2  
At5g41070	chr5:016438547	0.0	W/16438547-16438792,16438887-16439106,16439201-16439916	AT5G41070.1  CDS  gene_syn DRB5, DSRNA-BINDING PROTEIN 5, MEE6.14, MEE6_14  gene DRB5  function Encodes a double-stranded RNA binding protein.  go_component intracellular|GO:0005622||IEA  go_process biological_process|GO:0008150||ND  go_function double-stranded RNA binding|GO:0003725|15821876|IDA  go_function double-stranded RNA binding|GO:0003725||ISS  product DRB5 (DSRNA-BINDING PROTEIN 5); double-stranded RNA binding  note DSRNA-BINDING PROTEIN 5 (DRB5); FUNCTIONS IN: double-stranded RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: DRB3 (dsRNA-binding protein 3); RNA binding / double-stranded RNA binding (TAIR:AT3G26932.2); Has 300 Blast hits to 287 proteins in 79 species: Archae - 0; Bacteria - 71; Metazoa - 87; Fungi - 5; Plants - 118; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT5G41070.1p  transcript_id AT5G41070.1  protein_id AT5G41070.1p  transcript_id AT5G41070.1  
At5g41071	chr5:016440069	0.0	W/16440069-16440251	AT5G41071.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G41071.1p  transcript_id AT5G41071.1  protein_id AT5G41071.1p  transcript_id AT5G41071.1  
At5g41080	chr5:016441858	0.0	W/16441858-16441927,16442011-16442195,16442418-16442477,16442567-16442848,16443081-16443176,16443285-16443481,16443601-16443835	AT5G41080.1  CDS  gene_syn MEE6.15, MEE6_15  go_process glycerol metabolic process|GO:0006071||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function phosphoric diester hydrolase activity|GO:0008081||IEA  go_function glycerophosphodiester phosphodiesterase activity|GO:0008889||IEA  go_process glycerol metabolic process|GO:0006071||ISS  go_function glycerophosphodiester phosphodiesterase activity|GO:0008889||ISS  product glycerophosphoryl diester phosphodiesterase family protein  note glycerophosphoryl diester phosphodiesterase family protein; FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: SRG3 (senescence-related gene 3); glycerophosphodiester phosphodiesterase/ phosphoric diester hydrolase (TAIR:AT3G02040.1); Has 1314 Blast hits to 1286 proteins in 350 species: Archae - 22; Bacteria - 625; Metazoa - 237; Fungi - 103; Plants - 54; Viruses - 2; Other Eukaryotes - 271 (source: NCBI BLink).  protein_id AT5G41080.1p  transcript_id AT5G41080.1  protein_id AT5G41080.1p  transcript_id AT5G41080.1  
At5g41080	chr5:016441989	0.0	W/16441989-16442195,16442418-16442477,16442567-16442848,16443081-16443176,16443285-16443481,16443601-16443835	AT5G41080.2  CDS  gene_syn MEE6.15, MEE6_15  go_process glycerol metabolic process|GO:0006071||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function phosphoric diester hydrolase activity|GO:0008081||IEA  go_function glycerophosphodiester phosphodiesterase activity|GO:0008889||IEA  go_process glycerol metabolic process|GO:0006071||ISS  go_function glycerophosphodiester phosphodiesterase activity|GO:0008889||ISS  product glycerophosphoryl diester phosphodiesterase family protein  note glycerophosphoryl diester phosphodiesterase family protein; FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: SRG3 (senescence-related gene 3); glycerophosphodiester phosphodiesterase/ phosphoric diester hydrolase (TAIR:AT3G02040.1); Has 1317 Blast hits to 1289 proteins in 351 species: Archae - 22; Bacteria - 627; Metazoa - 237; Fungi - 103; Plants - 54; Viruses - 2; Other Eukaryotes - 272 (source: NCBI BLink).  protein_id AT5G41080.2p  transcript_id AT5G41080.2  protein_id AT5G41080.2p  transcript_id AT5G41080.2  
At5g41090	chr5:016445764	0.0	W/16445764-16445932,16446068-16446537	AT5G41090.1  CDS  gene_syn Arabidopsis NAC domain containing protein 95, MEE6.16, MEE6_16, anac095  gene anac095  go_process regulation of transcription|GO:0045449||IEA  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac095 (Arabidopsis NAC domain containing protein 95); transcription factor  note Arabidopsis NAC domain containing protein 95 (anac095); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: no apical meristem (NAM) family protein (TAIR:AT3G56520.1); Has 970 Blast hits to 968 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 1; Plants - 967; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G41090.1p  transcript_id AT5G41090.1  protein_id AT5G41090.1p  transcript_id AT5G41090.1  
At5g41100	chr5:016447429	0.0	W/16447429-16447545,16447903-16447975,16448325-16448396,16448473-16448534,16448636-16448704,16448858-16448886,16448973-16449183,16449274-16449510,16449599-16449652,16449774-16450575,16450664-16450686	AT5G41100.2  CDS  gene_syn MEE6.17, MEE6_17  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G26910.2); Has 1257 Blast hits to 957 proteins in 161 species: Archae - 2; Bacteria - 67; Metazoa - 448; Fungi - 227; Plants - 135; Viruses - 33; Other Eukaryotes - 345 (source: NCBI BLink).  protein_id AT5G41100.2p  transcript_id AT5G41100.2  protein_id AT5G41100.2p  transcript_id AT5G41100.2  
At5g41100	chr5:016447429	0.0	W/16447429-16447545,16447903-16447975,16448325-16448396,16448473-16448534,16448636-16448704,16448858-16448886,16448973-16449183,16449274-16449510,16449599-16449652,16449774-16450610	AT5G41100.1  CDS  gene_syn MEE6.17, MEE6_17  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G26910.2); Has 1264 Blast hits to 964 proteins in 165 species: Archae - 2; Bacteria - 75; Metazoa - 445; Fungi - 228; Plants - 134; Viruses - 35; Other Eukaryotes - 345 (source: NCBI BLink).  protein_id AT5G41100.1p  transcript_id AT5G41100.1  protein_id AT5G41100.1p  transcript_id AT5G41100.1  
At5g41109	chr5:016452453	0.0	C/16452453-16452593	AT5G41109.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G41109.1p  transcript_id AT5G41109.1  protein_id AT5G41109.1p  transcript_id AT5G41109.1  
At5g41110	chr5:016452598	0.0	W/16452598-16453725,16453847-16454098,16454204-16454284,16454488-16454841,16454939-16454989	AT5G41110.1  CDS  gene_syn MEE6.18, MEE6_18  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26890.5); Has 246 Blast hits to 240 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 157; Fungi - 44; Plants - 40; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G41110.1p  transcript_id AT5G41110.1  protein_id AT5G41110.1p  transcript_id AT5G41110.1  
At5g41120	chr5:016458850	0.0	C/16458850-16459198,16458686-16458737,16458482-16458537,16458245-16458403,16457854-16457958,16457605-16457696,16457324-16457445,16457090-16457198,16456761-16456891,16456209-16456578,16456020-16456133,16455707-16455792,16455312-16455621	AT5G41120.1  CDS  gene_syn MEE6.19, MEE6_19  go_process metabolic process|GO:0008152||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_component cellular_component|GO:0005575||ND  go_function catalytic activity|GO:0003824||ISS  product esterase/lipase/thioesterase family protein  note esterase/lipase/thioesterase family protein; FUNCTIONS IN: catalytic activity, acyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: acyltransferase/ catalytic (TAIR:AT5G41130.1); Has 376 Blast hits to 369 proteins in 113 species: Archae - 0; Bacteria - 200; Metazoa - 50; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT5G41120.1p  transcript_id AT5G41120.1  protein_id AT5G41120.1p  transcript_id AT5G41120.1  
At5g41130	chr5:016462896	0.0	C/16462896-16463241,16462741-16462792,16462497-16462552,16462244-16462402,16461978-16462082,16461731-16461837,16461458-16461579,16461230-16461338,16460995-16461125,16460480-16460849,16460292-16460405,16460122-16460207,16459714-16460023	AT5G41130.1  CDS  gene_syn MEE6.20, MEE6_20  go_process metabolic process|GO:0008152||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_component cellular_component|GO:0005575||ND  go_function catalytic activity|GO:0003824||ISS  product acyltransferase/ catalytic  note acyltransferase/ catalytic; FUNCTIONS IN: catalytic activity, acyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: esterase/lipase/thioesterase family protein (TAIR:AT5G41120.1); Has 302 Blast hits to 296 proteins in 91 species: Archae - 0; Bacteria - 180; Metazoa - 8; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT5G41130.1p  transcript_id AT5G41130.1  protein_id AT5G41130.1p  transcript_id AT5G41130.1  
At5g41140	chr5:016468726	0.0	W/16468726-16468806,16469064-16469267,16469344-16469466,16469619-16469659,16469746-16469851,16469925-16471931,16472007-16472138,16472222-16472292,16472360-16472546	AT5G41140.1  CDS  gene_syn MEE6.21, MEE6_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63300.1); Has 134231 Blast hits to 67045 proteins in 2157 species: Archae - 1495; Bacteria - 17732; Metazoa - 63246; Fungi - 9993; Plants - 4740; Viruses - 695; Other Eukaryotes - 36330 (source: NCBI BLink).  protein_id AT5G41140.1p  transcript_id AT5G41140.1  protein_id AT5G41140.1p  transcript_id AT5G41140.1  
At5g41150	chr5:016476054	0.0	C/16476054-16476919,16475751-16475974,16475568-16475653,16475235-16475384,16474378-16475121	AT5G41150.2  CDS  gene_syn ATRAD1, MEE6.22, MEE6_22, RAD1, REPAIR ENDONUCLEASE, ULTRAVIOLET HYPERSENSITIVE 1, UVH1  gene UVH1  function Confers resistance to UV radiation. Homolog of the human xeroderma pigmentosum group F DNA repair and yeast Rad1 proteins  go_process double-strand break repair via homologous recombination|GO:0000724|12393748|IMP  go_process DNA repair|GO:0006281|15053760|IEP  go_process nucleotide-excision repair|GO:0006289|11027708|IMP  go_process response to oxidative stress|GO:0006979|11826311|IMP  go_process response to radiation|GO:0009314|15133154|IEP  go_function single-stranded DNA specific endodeoxyribonuclease activity|GO:0000014|11027708|IMP  product UVH1 (ULTRAVIOLET HYPERSENSITIVE 1); single-stranded DNA specific endodeoxyribonuclease  note ULTRAVIOLET HYPERSENSITIVE 1 (UVH1); FUNCTIONS IN: single-stranded DNA specific endodeoxyribonuclease activity; INVOLVED IN: response to oxidative stress, DNA repair, response to radiation, double-strand break repair via homologous recombination, nucleotide-excision repair; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; Has 376 Blast hits to 349 proteins in 132 species: Archae - 6; Bacteria - 0; Metazoa - 177; Fungi - 103; Plants - 30; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT5G41150.2p  transcript_id AT5G41150.2  protein_id AT5G41150.2p  transcript_id AT5G41150.2  
At5g41150	chr5:016476054	0.0	C/16476054-16476919,16475751-16475974,16475568-16475653,16475235-16475384,16474384-16475121,16474011-16474121,16473665-16473925,16473343-16473566,16473044-16473254	AT5G41150.1  CDS  gene_syn ATRAD1, MEE6.22, MEE6_22, RAD1, REPAIR ENDONUCLEASE, ULTRAVIOLET HYPERSENSITIVE 1, UVH1  gene UVH1  function Confers resistance to UV radiation. Homolog of the human xeroderma pigmentosum group F DNA repair and yeast Rad1 proteins  go_process double-strand break repair via homologous recombination|GO:0000724|12393748|IMP  go_process DNA repair|GO:0006281|15053760|IEP  go_process nucleotide-excision repair|GO:0006289|11027708|IMP  go_process response to oxidative stress|GO:0006979|11826311|IMP  go_process response to radiation|GO:0009314|15133154|IEP  go_function single-stranded DNA specific endodeoxyribonuclease activity|GO:0000014|11027708|IMP  product UVH1 (ULTRAVIOLET HYPERSENSITIVE 1); single-stranded DNA specific endodeoxyribonuclease  note ULTRAVIOLET HYPERSENSITIVE 1 (UVH1); FUNCTIONS IN: single-stranded DNA specific endodeoxyribonuclease activity; INVOLVED IN: response to oxidative stress, DNA repair, response to radiation, double-strand break repair via homologous recombination, nucleotide-excision repair; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA repair nuclease, XPF-type/Helicase (InterPro:IPR006166), Restriction endonuclease, type II-like, core (InterPro:IPR011335); Has 624 Blast hits to 569 proteins in 210 species: Archae - 132; Bacteria - 16; Metazoa - 196; Fungi - 109; Plants - 34; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).  protein_id AT5G41150.1p  transcript_id AT5G41150.1  protein_id AT5G41150.1p  transcript_id AT5G41150.1  
At5g41160	chr5:016477360	0.0	W/16477360-16478436	AT5G41160.1  CDS  gene_syn ATPUP12, MEE6.23, MEE6_23  gene ATPUP12  function Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.  go_component membrane|GO:0016020|10662864|TAS  go_process purine transport|GO:0006863|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345||ISS  product ATPUP12; purine transmembrane transporter  note ATPUP12; FUNCTIONS IN: purine transmembrane transporter activity; INVOLVED IN: purine transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: ATPUP13; purine transmembrane transporter (TAIR:AT4G08700.1); Has 291 Blast hits to 285 proteins in 45 species: Archae - 2; Bacteria - 40; Metazoa - 5; Fungi - 16; Plants - 214; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT5G41160.1p  transcript_id AT5G41160.1  protein_id AT5G41160.1p  transcript_id AT5G41160.1  
At5g41170	chr5:016478860	0.0	C/16478860-16480443	AT5G41170.1  CDS  gene_syn MEE6.24, MEE6_24  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: stem, sperm cell, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16710.1); Has 27867 Blast hits to 6121 proteins in 185 species: Archae - 5; Bacteria - 18; Metazoa - 886; Fungi - 644; Plants - 24943; Viruses - 0; Other Eukaryotes - 1371 (source: NCBI BLink).  protein_id AT5G41170.1p  transcript_id AT5G41170.1  protein_id AT5G41170.1p  transcript_id AT5G41170.1  
At5g41180	chr5:016484045	0.0	W/16484045-16484141,16484309-16484447,16484539-16484610,16484720-16484863,16484942-16485073,16485165-16485287,16485373-16485437,16485525-16485734,16485828-16486033,16486122-16486254,16486338-16486495,16486584-16486799,16486929-16487228	AT5G41180.1  CDS  gene_syn MEE6.25, MEE6_25  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat protein kinase, putative  note leucine-rich repeat protein kinase, putative; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT1G63430.1); Has 52417 Blast hits to 27029 proteins in 841 species: Archae - 37; Bacteria - 2013; Metazoa - 9555; Fungi - 420; Plants - 36603; Viruses - 87; Other Eukaryotes - 3702 (source: NCBI BLink).  protein_id AT5G41180.1p  transcript_id AT5G41180.1  protein_id AT5G41180.1p  transcript_id AT5G41180.1  
At5g41190	chr5:016489694	0.0	C/16489694-16490012,16488512-16489562,16488224-16488392,16487862-16487981,16487628-16487777	AT5G41190.1  CDS  gene_syn MEE6.26, MEE6_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nin one binding (NOB1) Zn-ribbon like (InterPro:IPR014881), D-site 20S pre-rRNA nuclease (InterPro:IPR017117); Has 855 Blast hits to 653 proteins in 196 species: Archae - 53; Bacteria - 16; Metazoa - 335; Fungi - 168; Plants - 29; Viruses - 10; Other Eukaryotes - 244 (source: NCBI BLink).  protein_id AT5G41190.1p  transcript_id AT5G41190.1  protein_id AT5G41190.1p  transcript_id AT5G41190.1  
At5g41200	chr5:016490544	0.0	W/16490544-16491536	AT5G41200.1  CDS  gene_syn AGAMOUS-LIKE 75, AGL75, MEE6.27, MEE6_27  gene AGL75  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL75 (AGAMOUS-LIKE 75); DNA binding / transcription factor  note AGAMOUS-LIKE 75 (AGL75); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL43 (AGAMOUS-LIKE 43); transcription factor (TAIR:AT5G40220.1); Has 324 Blast hits to 317 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 304; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT5G41200.1p  transcript_id AT5G41200.1  protein_id AT5G41200.1p  transcript_id AT5G41200.1  
At5g41210	chr5:016493817	0.0	C/16493817-16493884,16493644-16493717,16493423-16493483,16493281-16493334,16493133-16493212,16492848-16493053,16492550-16492744	AT5G41210.1  CDS  gene_syn ATGSTT1, GLUTATHIONE S-TRANSFERASE THETA 1, GST10, GSTU12, MEE6.28, MEE6_28  gene ATGSTT1  function Encodes glutathione transferase belonging to the theta class of GSTs. Naming convention according to Wagner et al. (2002).  go_component peroxisome|GO:0005777|17951448|IDA  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTT1 (GLUTATHIONE S-TRANSFERASE THETA 1); glutathione transferase  note GLUTATHIONE S-TRANSFERASE THETA 1 (ATGSTT1); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: toxin catabolic process; LOCATED IN: peroxisome, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTT3 (GLUTATHIONE S-TRANSFERASE THETA 3); glutathione transferase (TAIR:AT5G41220.1); Has 6136 Blast hits to 6115 proteins in 754 species: Archae - 0; Bacteria - 2604; Metazoa - 1617; Fungi - 97; Plants - 452; Viruses - 0; Other Eukaryotes - 1366 (source: NCBI BLink).  protein_id AT5G41210.1p  transcript_id AT5G41210.1  protein_id AT5G41210.1p  transcript_id AT5G41210.1  
At5g41220	chr5:016496905	0.0	C/16496905-16496969,16496750-16496823,16496574-16496634,16496446-16496499,16496278-16496357,16495980-16496185,16495687-16495877,16494560-16495601	AT5G41220.1  CDS  gene_syn ATGSTT3, GLUTATHIONE S-TRANSFERASE THETA 3, GST10C, K1O13.1, K1O13_1  gene ATGSTT3  function Encodes glutathione transferase belonging to the theta class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTT3 (GLUTATHIONE S-TRANSFERASE THETA 3); glutathione transferase  note GLUTATHIONE S-TRANSFERASE THETA 3 (ATGSTT3); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: ATGSTT2 (GLUTATHIONE S-TRANSFERASE THETA 2); glutathione transferase (TAIR:AT5G41240.1); Has 5279 Blast hits to 5222 proteins in 700 species: Archae - 4; Bacteria - 2049; Metazoa - 1620; Fungi - 84; Plants - 594; Viruses - 12; Other Eukaryotes - 916 (source: NCBI BLink).  protein_id AT5G41220.1p  transcript_id AT5G41220.1  protein_id AT5G41220.1p  transcript_id AT5G41220.1  
At5g41240	chr5:016500747	0.0	C/16500747-16500811,16500586-16500659,16500408-16500468,16500264-16500317,16500116-16500195,16499819-16500024,16499472-16499662,16498293-16499337	AT5G41240.1  CDS  gene_syn ATGSTT2, GLUTATHIONE S-TRANSFERASE THETA 2, GST10B, K1O13.3, K1O13_3  gene ATGSTT2  function Encodes glutathione transferase belonging to the theta class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTT2 (GLUTATHIONE S-TRANSFERASE THETA 2); glutathione transferase  note GLUTATHIONE S-TRANSFERASE THETA 2 (ATGSTT2); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: ATGSTT3 (GLUTATHIONE S-TRANSFERASE THETA 3); glutathione transferase (TAIR:AT5G41220.1); Has 6795 Blast hits to 6717 proteins in 769 species: Archae - 0; Bacteria - 2658; Metazoa - 1761; Fungi - 139; Plants - 640; Viruses - 4; Other Eukaryotes - 1593 (source: NCBI BLink).  protein_id AT5G41240.1p  transcript_id AT5G41240.1  protein_id AT5G41240.1p  transcript_id AT5G41240.1  
At5g41250	chr5:016501217	0.0	C/16501217-16502902	AT5G41250.1  CDS  gene_syn K1O13.4, K1O13_4  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product exostosin family protein  note exostosin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: catalytic (TAIR:AT1G63450.1); Has 374 Blast hits to 372 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 344; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT5G41250.1p  transcript_id AT5G41250.1  protein_id AT5G41250.1p  transcript_id AT5G41250.1  
At5g41260	chr5:016503997	0.0	W/16503997-16504078,16504161-16504381,16504721-16504856,16504971-16505104,16505183-16505288,16505484-16505569,16505736-16505924,16506141-16506293,16506464-16506577,16506728-16506970	AT5G41260.1  CDS  gene_syn K1O13.5, K1O13_5  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function binding|GO:0005488||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein tyrosine kinase activity, binding, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Tetratricopeptide-like helical (InterPro:IPR011990), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATP binding / binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT1G63500.1); Has 23694 Blast hits to 23307 proteins in 918 species: Archae - 7; Bacteria - 1516; Metazoa - 7945; Fungi - 180; Plants - 12315; Viruses - 98; Other Eukaryotes - 1633 (source: NCBI BLink).  protein_id AT5G41260.1p  transcript_id AT5G41260.1  protein_id AT5G41260.1p  transcript_id AT5G41260.1  
At5g41265	chr5:016507533	0.0	C/16507533-16507604	AT5G41265.1  tRNA  gene_syn 67758.TRNA-CYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Cys (anticodon: GCA)  transcript_id AT5G41265.1  
At5g41270	chr5:016507797	0.0	W/16507797-16508017,16508258-16508813	AT5G41270.1  CDS  gene_syn K1O13.7, K1O13_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: RNAse P, Rpr2/Rpp21 subunit (InterPro:IPR007175); Has 45 Blast hits to 45 proteins in 15 species: Archae - 0; Bacteria - 21; Metazoa - 8; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G41270.1p  transcript_id AT5G41270.1  protein_id AT5G41270.1p  transcript_id AT5G41270.1  
At5g41280	chr5:016509532	0.0	W/16509532-16510327,16510665-16510729	AT5G41280.1  CDS  gene_syn K1O13.8, K1O13_8  go_component anchored to plasma membrane|GO:0046658|12805588|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, anchored to membrane; EXPRESSED IN: hypocotyl, root, callus; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase-related (TAIR:AT5G41290.1); Has 883 Blast hits to 865 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 883; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G41280.1p  transcript_id AT5G41280.1  protein_id AT5G41280.1p  transcript_id AT5G41280.1  
At5g41290	chr5:016512326	0.0	W/16512326-16513115,16513427-16513500	AT5G41290.1  CDS  gene_syn K1O13.9, K1O13_9  go_component anchored to plasma membrane|GO:0046658|12805588|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  product receptor-like protein kinase-related  note receptor-like protein kinase-related; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, anchored to membrane; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41280.1); Has 898 Blast hits to 875 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 898; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G41290.1p  transcript_id AT5G41290.1  protein_id AT5G41290.1p  transcript_id AT5G41290.1  
At5g41300	chr5:016515004	0.0	W/16515004-16515808,16516044-16516102	AT5G41300.1  CDS  gene_syn K1O13.10, K1O13_10  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product receptor-like protein kinase-related  note receptor-like protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41280.1); Has 893 Blast hits to 866 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 891; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G41300.1p  transcript_id AT5G41300.1  protein_id AT5G41300.1p  transcript_id AT5G41300.1  
At5g41310	chr5:016522269	0.0	C/16522269-16522392,16522023-16522174,16521816-16521896,16521385-16521564,16521195-16521272,16521035-16521112,16520843-16520935,16520438-16520734,16520260-16520341,16520039-16520134,16519312-16519491,16519117-16519223,16518584-16518749,16518315-16518438,16517979-16518232,16517734-16517897,16517055-16517512,16516844-16516953,16516634-16516695	AT5G41310.1  CDS  gene_syn K1O13.11, K1O13_11  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product kinesin motor protein-related  note kinesin motor protein-related; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin motor protein-related (TAIR:AT1G63640.2); Has 9484 Blast hits to 8881 proteins in 370 species: Archae - 13; Bacteria - 161; Metazoa - 4555; Fungi - 1014; Plants - 944; Viruses - 24; Other Eukaryotes - 2773 (source: NCBI BLink).  protein_id AT5G41310.1p  transcript_id AT5G41310.1  protein_id AT5G41310.1p  transcript_id AT5G41310.1  
At5g41315	chr5:016529457	0.0	W/16529457-16529578,16529920-16530201,16530781-16530877,16530975-16531046,16531367-16532200,16532285-16532719,16532795-16532866	AT5G41315.1  CDS  gene_syn GL3, GLABRA 3, GLABROUS 3, MYC6.2  gene GL3  function encodes a basic helix loop helix domain protein that interacts with GL1 in trichome development.  go_component nucleus|GO:0005634|15590742|IDA  go_process cell fate specification|GO:0001708|11063707|IMP  go_process epidermal cell fate specification|GO:0009957|12917293|IMP  go_process trichome branching|GO:0010091|10572032|IMP  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function transcription factor activity|GO:0003700||NAS  go_function protein binding|GO:0005515|11063707|IPI  product GL3 (GLABROUS 3); protein binding / transcription factor  note GLABROUS 3 (GL3); FUNCTIONS IN: protein binding, transcription factor activity; INVOLVED IN: trichome branching, cell fate specification, epidermal cell fate specification; LOCATED IN: nucleus; EXPRESSED IN: leaf trichome, atrichoblast; EXPRESSED DURING: leaf trichome development stage; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: EGL3 (ENHANCER OF GLABRA 3); DNA binding / transcription factor (TAIR:AT1G63650.2); Has 2120 Blast hits to 2020 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 206; Fungi - 50; Plants - 1854; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G41315.1p  transcript_id AT5G41315.1  protein_id AT5G41315.1p  transcript_id AT5G41315.1  
At5g41320	chr5:016534442	0.0	W/16534442-16535989	AT5G41320.1  CDS  gene_syn MYC6.3, MYC6_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage; Has 2130 Blast hits to 1689 proteins in 173 species: Archae - 2; Bacteria - 79; Metazoa - 830; Fungi - 176; Plants - 36; Viruses - 7; Other Eukaryotes - 1000 (source: NCBI BLink).  protein_id AT5G41320.1p  transcript_id AT5G41320.1  protein_id AT5G41320.1p  transcript_id AT5G41320.1  
At5g41330	chr5:016536452	0.0	C/16536452-16537828	AT5G41330.1  CDS  gene_syn MYC6.4, MYC6_4  go_component voltage-gated potassium channel complex|GO:0008076||IEA  go_component membrane|GO:0016020||IEA  go_process potassium ion transport|GO:0006813||IEA  go_function voltage-gated potassium channel activity|GO:0005249||IEA  go_function protein binding|GO:0005515||IEA  go_component voltage-gated potassium channel complex|GO:0008076||ISS  go_component membrane|GO:0016020||ISS  go_process potassium ion transport|GO:0006813||ISS  go_function voltage-gated potassium channel activity|GO:0005249||ISS  product potassium channel tetramerisation domain-containing protein  note potassium channel tetramerisation domain-containing protein; FUNCTIONS IN: protein binding, voltage-gated potassium channel activity; INVOLVED IN: potassium ion transport; LOCATED IN: voltage-gated potassium channel complex, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), BTB/POZ fold (InterPro:IPR011333), Potassium channel, voltage dependent, Kv, tetramerisation (InterPro:IPR003131), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: potassium channel tetramerisation domain-containing protein (TAIR:AT3G09030.1); Has 474 Blast hits to 473 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 378; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT5G41330.1p  transcript_id AT5G41330.1  protein_id AT5G41330.1p  transcript_id AT5G41330.1  
At5g41340	chr5:016539913	0.0	C/16539913-16539956,16539734-16539813,16539236-16539350,16539097-16539149,16538871-16538999,16538296-16538438	AT5G41340.1  CDS  gene_syn ATUBC4, MYC6.5, MYC6_5, UBC4, UBIQUITIN CONJUGATING ENZYME 4  gene UBC4  function Belongs to Ubiquitin conjugating enzyme family. Gene expression is developmentally regulated.  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_process response to heat|GO:0009408|8790283|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|8155884|ISS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC4 (UBIQUITIN CONJUGATING ENZYME 4); ubiquitin-protein ligase  note UBIQUITIN CONJUGATING ENZYME 4 (UBC4); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: response to heat, ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), Ubiquitin-conjugating enzyme (InterPro:IPR015581); BEST Arabidopsis thaliana protein match is: UBC5 (ubiquitin-conjugating enzyme 5); ubiquitin-protein ligase (TAIR:AT1G63800.1); Has 6450 Blast hits to 6450 proteins in 298 species: Archae - 0; Bacteria - 0; Metazoa - 3236; Fungi - 1158; Plants - 949; Viruses - 16; Other Eukaryotes - 1091 (source: NCBI BLink).  protein_id AT5G41340.1p  transcript_id AT5G41340.1  protein_id AT5G41340.1p  transcript_id AT5G41340.1  
At5g41350	chr5:016543024	0.0	C/16543024-16543092,16542424-16542853,16542205-16542314,16542026-16542055	AT5G41350.1  CDS  gene_syn MYC6.6, MYC6_6  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: RHB1A; protein binding / zinc ion binding (TAIR:AT4G00335.2); Has 5625 Blast hits to 5615 proteins in 210 species: Archae - 0; Bacteria - 0; Metazoa - 1934; Fungi - 450; Plants - 2157; Viruses - 38; Other Eukaryotes - 1046 (source: NCBI BLink).  protein_id AT5G41350.1p  transcript_id AT5G41350.1  protein_id AT5G41350.1p  transcript_id AT5G41350.1  
At5g41360	chr5:016544574	0.0	W/16544574-16544583,16544683-16544726,16544814-16544886,16544967-16545135,16545218-16545440,16545543-16545599,16545907-16546050,16546159-16546239,16546336-16546423,16546635-16546972,16547158-16547233,16547321-16547514,16547810-16547973,16548061-16548133,16548236-16548349,16548452-16548532,16548750-16549121	AT5G41360.1  CDS  gene_syn ATXPB2, Arabidopsis homolog of xeroderma pigmentosum complementation group B 2, MYC6.7, MYC6_7, XPB2  gene XPB2  function Encodes XPB2, a DNA repair protein and transcription factor. Arabidopsis thaliana has duplicated XPB gene (AtXPB1 and AtXPB2, with high similarity to each other). XPB proteins are involved in both DNA repair and transcription, they are component of the transcription factor IIH (TFIIH) and are responsible for DNA helicase activity during nucleotide (nt) excision repair (NER). Complementation assays in yeast rad25 mutant strains suggest the involvement of AtXPB2 in DNA repair. Although both genes are expressed in a constitutive manner during the plant life cycle, Northern blot analyses suggest that light modulates the expression level of both XPB copies.  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function ATP-dependent DNA helicase activity|GO:0004003||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function hydrolase activity|GO:0016787||IEA  go_process response to UV-B|GO:0010224|15656976|IEP  go_function ATP-dependent helicase activity|GO:0008026||ISS  product XPB2; ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / helicase/ hydrolase/ nucleic acid binding  note XPB2; FUNCTIONS IN: in 7 functions; INVOLVED IN: response to UV-B, N-terminal protein myristoylation; EXPRESSED IN: whole plant; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), DEAD-like helicase, N-terminal (InterPro:IPR014001), Xeroderma pigmentosum group B protein (XP-B) (InterPro:IPR001161), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: XPB1 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1); ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / helicase/ hydrolase/ nucleic acid binding (TAIR:AT5G41370.1); Has 1444 Blast hits to 1410 proteins in 418 species: Archae - 142; Bacteria - 446; Metazoa - 119; Fungi - 121; Plants - 28; Viruses - 37; Other Eukaryotes - 551 (source: NCBI BLink).  protein_id AT5G41360.1p  transcript_id AT5G41360.1  protein_id AT5G41360.1p  transcript_id AT5G41360.1  
At5g41370	chr5:016551337	0.0	W/16551337-16551346,16551434-16551477,16551574-16551646,16551729-16551897,16551980-16552202,16552307-16552363,16552695-16552838,16552948-16553028,16553125-16553212,16553386-16553723,16553881-16553956,16554043-16554236,16554510-16554673,16554760-16554832,16554928-16555041,16555137-16555217,16555418-16555792	AT5G41370.1  CDS  gene_syn ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1, ATXPB1, MYC6.8, MYC6_8, XPB1  gene XPB1  function Encodes XPB1, a DNA repair protein and transcription factor. Arabidopsis thaliana has duplicated XPB gene (AtXPB1 and AtXPB2, with high similarity to each other). XPB proteins are involved in both DNA repair and transcription, they are component of the transcription factor IIH (TFIIH) and are responsible for DNA helicase activity during nucleotide (nt) excision repair (NER). Complementation assays in yeast rad25 mutant strains suggest the involvement of AtXPB2 in DNA repair. Although both genes are expressed in a constitutive manner during the plant life cycle, Northern blot analyses suggest that light modulates the expression level of both XPB copies.  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function ATP-dependent DNA helicase activity|GO:0004003||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function hydrolase activity|GO:0016787||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process response to UV|GO:0009411|15656976|IEP  go_process response to toxin|GO:0009636||IMP  go_function ATP-dependent helicase activity|GO:0008026||ISS  product XPB1 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1); ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / helicase/ hydrolase/ nucleic acid binding  note ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1 (XPB1); FUNCTIONS IN: in 7 functions; INVOLVED IN: response to UV, response to toxin; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: whole plant, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), DEAD-like helicase, N-terminal (InterPro:IPR014001), Xeroderma pigmentosum group B protein (XP-B) (InterPro:IPR001161), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: XPB2; ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / helicase/ hydrolase/ nucleic acid binding (TAIR:AT5G41360.1); Has 1409 Blast hits to 1379 proteins in 402 species: Archae - 138; Bacteria - 421; Metazoa - 119; Fungi - 124; Plants - 28; Viruses - 25; Other Eukaryotes - 554 (source: NCBI BLink).  protein_id AT5G41370.1p  transcript_id AT5G41370.1  protein_id AT5G41370.1p  transcript_id AT5G41370.1  
At5g41380	chr5:016563005	0.0	C/16563005-16563553,16562766-16562924,16562553-16562666,16562129-16562230	AT5G41380.1  CDS  gene_syn MYC6.9, MYC6_9  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63820.1); Has 952 Blast hits to 949 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 2; Plants - 890; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT5G41380.1p  transcript_id AT5G41380.1  protein_id AT5G41380.1p  transcript_id AT5G41380.1  
At5g41390	chr5:016565576	0.0	W/16565576-16565678,16565788-16565809,16566130-16566186,16566277-16566358,16566501-16566596,16566696-16566820,16566944-16567253	AT5G41390.1  CDS  gene_syn MYC6.10, MYC6_10  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT1G63830.2); Has 12019 Blast hits to 5816 proteins in 448 species: Archae - 6; Bacteria - 1151; Metazoa - 4980; Fungi - 1500; Plants - 2605; Viruses - 338; Other Eukaryotes - 1439 (source: NCBI BLink).  protein_id AT5G41390.1p  transcript_id AT5G41390.1  protein_id AT5G41390.1p  transcript_id AT5G41390.1  
At5g41390	chr5:016566179	0.0	W/16566179-16566186,16566277-16566358,16566501-16566596,16566696-16566820,16566944-16567253	AT5G41390.2  CDS  gene_syn MYC6.10, MYC6_10  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT1G63830.2); Has 11998 Blast hits to 5796 proteins in 448 species: Archae - 6; Bacteria - 1151; Metazoa - 4966; Fungi - 1500; Plants - 2602; Viruses - 338; Other Eukaryotes - 1435 (source: NCBI BLink).  protein_id AT5G41390.2p  transcript_id AT5G41390.2  protein_id AT5G41390.2p  transcript_id AT5G41390.2  
At5g41400	chr5:016569584	0.0	C/16569584-16570114	AT5G41400.1  CDS  gene_syn MYC6.11, MYC6_11  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G63840.1); Has 5133 Blast hits to 5120 proteins in 201 species: Archae - 0; Bacteria - 6; Metazoa - 1844; Fungi - 356; Plants - 2156; Viruses - 22; Other Eukaryotes - 749 (source: NCBI BLink).  protein_id AT5G41400.1p  transcript_id AT5G41400.1  protein_id AT5G41400.1p  transcript_id AT5G41400.1  
At5g41401	chr5:016572025	0.0	C/16572025-16572189	AT5G41401.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G41401.1p  transcript_id AT5G41401.1  protein_id AT5G41401.1p  transcript_id AT5G41401.1  
At5g41410	chr5:016580424	0.0	W/16580424-16581281,16581884-16582275,16583101-16583161,16583246-16583770	AT5G41410.1  CDS  gene_syn BEL1, BELL 1, MYC6.12, MYC6_12  gene BEL1  function Homeodomain protein required for ovule identity.Loss of function mutations show homeotic conversion of integuments to carpels.Forms heterodimers with STM and KNAT1. Interacts with AG-SEP heterodimers is thought to restrict WUS expression. BEL interacts with MADS box dimers composed of SEP1(or SEP3) and AG, SHP1, SHP2 and STK. The interaction of BEL1 with AG-SEP3 is required for proper integument development and specification of integument identity.  go_component nucleus|GO:0005634|8521490|IDA  go_component cytosol|GO:0005829|8521490|IDA  go_process ovule development|GO:0048481||IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein binding|GO:0005515|11701881|IPI  product BEL1 (BELL 1); DNA binding / protein binding / transcription factor  note BELL 1 (BEL1); FUNCTIONS IN: protein binding, transcription factor activity, DNA binding; INVOLVED IN: ovule development; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BLH4 (BEL1-LIKE HOMEODOMAIN 4); DNA binding / transcription factor (TAIR:AT2G23760.3); Has 6284 Blast hits to 5661 proteins in 296 species: Archae - 0; Bacteria - 9; Metazoa - 2166; Fungi - 282; Plants - 2073; Viruses - 5; Other Eukaryotes - 1749 (source: NCBI BLink).  protein_id AT5G41410.1p  transcript_id AT5G41410.1  protein_id AT5G41410.1p  transcript_id AT5G41410.1  
At5g41420	chr5:016585119	0.0	C/16585119-16585316	AT5G41420.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G41420.1p  transcript_id AT5G41420.1  protein_id AT5G41420.1p  transcript_id AT5G41420.1  
At5g41430	chr5:016586119	0.0	C/16586119-16586604	AT5G41430.1  CDS  gene_syn MYC6.13, MYC6_13  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G41450.1); Has 6128 Blast hits to 6111 proteins in 209 species: Archae - 0; Bacteria - 6; Metazoa - 2089; Fungi - 489; Plants - 2454; Viruses - 29; Other Eukaryotes - 1061 (source: NCBI BLink).  protein_id AT5G41430.1p  transcript_id AT5G41430.1  protein_id AT5G41430.1p  transcript_id AT5G41430.1  
At5g41440	chr5:016587235	0.0	C/16587235-16587609	AT5G41440.1  CDS  gene_syn MYC6.14, MYC6_14  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G41450.1); Has 5110 Blast hits to 5095 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 1831; Fungi - 205; Plants - 2308; Viruses - 10; Other Eukaryotes - 756 (source: NCBI BLink).  protein_id AT5G41440.1p  transcript_id AT5G41440.1  protein_id AT5G41440.1p  transcript_id AT5G41440.1  
At5g41450	chr5:016588600	0.0	C/16588600-16589094	AT5G41450.1  CDS  gene_syn MYC6.15, MYC6_15  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G41430.1); Has 5337 Blast hits to 5322 proteins in 198 species: Archae - 0; Bacteria - 6; Metazoa - 1778; Fungi - 419; Plants - 2321; Viruses - 13; Other Eukaryotes - 800 (source: NCBI BLink).  protein_id AT5G41450.1p  transcript_id AT5G41450.1  protein_id AT5G41450.1p  transcript_id AT5G41450.1  
At5g41460	chr5:016591268	0.0	C/16591268-16592197,16590260-16590558,16589919-16590162,16589724-16589825	AT5G41460.1  CDS  gene_syn MYC6.16, MYC6_16  go_process biological_process|GO:0008150||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product fringe-related protein  note fringe-related protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: fringe-related protein (TAIR:AT4G23490.1); Has 404 Blast hits to 400 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 146; Fungi - 114; Plants - 136; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G41460.1p  transcript_id AT5G41460.1  protein_id AT5G41460.1p  transcript_id AT5G41460.1  
At5g41470	chr5:016593953	0.0	W/16593953-16594303,16594414-16594528,16594633-16594714,16594932-16594983,16595084-16595138,16595241-16595419	AT5G41470.1  CDS  gene_syn MYC6.17, MYC6_17  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: nuclear transport factor 2 (NTF2) family protein (TAIR:AT1G71480.1); Has 52 Blast hits to 52 proteins in 18 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G41470.1p  transcript_id AT5G41470.1  protein_id AT5G41470.1p  transcript_id AT5G41470.1  
At5g41480	chr5:016595967	0.0	W/16595967-16596251,16596511-16596608,16596700-16596844,16596925-16596987,16597110-16597271,16597366-16597560,16597646-16597745,16597834-16597968,16598114-16598523	AT5G41480.1  CDS  gene_syn A. THALIANA DHFS-FPGS HOMOLOG A, ATDFA, DFA, DHFS-FPGS HOMOLOG A, GLA1, GLOBULAR ARREST1, MYC6.18, MYC6_18  gene GLA1  function Encodes a dihydrofolate synthetase based on yeast complementation experiments. This protein is involved in folate biosynthesis.  go_component mitochondrial matrix|GO:0005759|11752472|IDA  go_process one-carbon compound metabolic process|GO:0006730|11752472|TAS  go_process embryonic development ending in seed dormancy|GO:0009793|12535338|IMP  go_function dihydrofolate synthase activity|GO:0008841|11752472|IGI  product GLA1 (GLOBULAR ARREST1); dihydrofolate synthase  note GLOBULAR ARREST1 (GLA1); FUNCTIONS IN: dihydrofolate synthase activity; INVOLVED IN: embryonic development ending in seed dormancy, one-carbon compound metabolic process; LOCATED IN: mitochondrial matrix; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mur ligase, central (InterPro:IPR013221), Folylpolyglutamate synthetase, conserved site (InterPro:IPR018109), Mur ligase, C-terminal (InterPro:IPR004101), Folylpolyglutamate synthetase (InterPro:IPR001645); BEST Arabidopsis thaliana protein match is: ATDFD (A. THALIANA DHFS-FPGS HOMOLOG D); tetrahydrofolylpolyglutamate synthase (TAIR:AT3G55630.3); Has 5509 Blast hits to 5506 proteins in 1338 species: Archae - 25; Bacteria - 2618; Metazoa - 138; Fungi - 236; Plants - 66; Viruses - 0; Other Eukaryotes - 2426 (source: NCBI BLink).  protein_id AT5G41480.1p  transcript_id AT5G41480.1  protein_id AT5G41480.1p  transcript_id AT5G41480.1  
At5g41471	chr5:016598796	0.0	W/16598796-16598905	AT5G41471.1  snoRNA  gene_syn SMALL NUCLEOLAR RNA 108, SNOR108  gene SNOR108  function predicted to encode a C/D box type of snoRNA, also known as Ath-350 (GB: AJ505636). But, the submitted sequence of 110 nucleotides is only part of the 160 nucleotide sequence predicted by Northern blotting. It is assumed that a 5  portion of the gene is missing and its 5  end has not been conclusively mapped. Sequence analysis of this snoRNA suggests that it may not function like other C/D box family members that modify rRNAs or snRNAs. Its true biological target remains unknown. The promoter of this snoRNA has hallmarks of the snRNA promoters targeted by RNA polymerase II, indicating that it might also have a TMG (2,2,7 trimethyguanosine) cap. SnoRNA108 may also play a novel role in ribosome biogenesis (Marker 2002).  go_component box C/D snoRNP complex|GO:0031428||IC  go_process ribosome biogenesis|GO:0042254|12477388|TAS  go_function molecular_function|GO:0003674||ND  product SNOR108 (SMALL NUCLEOLAR RNA 108); snoRNA  transcript_id AT5G41471.1  
At5g41490	chr5:016600445	0.0	W/16600445-16601608	AT5G41490.1  CDS  gene_syn MYC6.19, MYC6_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product F-box family protein  note F-box family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G41510.1); Has 662 Blast hits to 633 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 660; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G41490.1p  transcript_id AT5G41490.1  protein_id AT5G41490.1p  transcript_id AT5G41490.1  
At5g41491	chr5:016601970	0.0	C/16601970-16602446	AT5G41491.1  pseudogenic_transcript  pseudo  function Pseudogene of AT2G38420; pentatricopeptide (PPR) repeat-containing protein  
At5g41494	chr5:016602589	0.0	W/16602589-16603438	AT5G41494.1  pseudogenic_transcript  pseudo  function pseudogene of F-box family protein  
At5g41500	chr5:016604002	0.0	W/16604002-16605213	AT5G41500.1  CDS  gene_syn MPK23.3, MPK23_3  product F-box family protein  note F-box family protein; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G41510.1); Has 693 Blast hits to 665 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 691; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G41500.1p  transcript_id AT5G41500.1  protein_id AT5G41500.1p  transcript_id AT5G41500.1  
At5g41505	chr5:016605491	0.0	C/16605491-16606228	AT5G41505.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G13655.1); similar to hypothetical protein 23.t00046 [Brassica oleracea] (GB:ABD65629.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446)  
At5g41510	chr5:016607124	0.0	W/16607124-16608326	AT5G41510.1  CDS  gene_syn MBK23.3, MBK23_3  product F-box family protein  note F-box family protein; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G41500.1); Has 665 Blast hits to 637 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 663; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G41510.1p  transcript_id AT5G41510.1  protein_id AT5G41510.1p  transcript_id AT5G41510.1  
At5g41520	chr5:016610010	0.0	C/16610010-16610203,16609787-16609913,16609377-16609460	AT5G41520.2  CDS  gene_syn MBK23.4, MBK23_4  go_component chloroplast|GO:0009507|18431481|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S10 (RPS10B)  note 40S ribosomal protein S10 (RPS10B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Plectin/S10, N-terminal (InterPro:IPR005326); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S10 (RPS10C) (TAIR:AT5G52650.1); Has 4884 Blast hits to 3021 proteins in 399 species: Archae - 0; Bacteria - 713; Metazoa - 2175; Fungi - 465; Plants - 852; Viruses - 49; Other Eukaryotes - 630 (source: NCBI BLink).  protein_id AT5G41520.2p  transcript_id AT5G41520.2  protein_id AT5G41520.2p  transcript_id AT5G41520.2  
At5g41520	chr5:016610581	0.0	C/16610581-16610583,16610419-16610467,16610010-16610289,16609787-16609913,16609377-16609460	AT5G41520.1  CDS  gene_syn MBK23.4, MBK23_4  go_component cell wall|GO:0005618|16287169|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S10 (RPS10B)  note 40S ribosomal protein S10 (RPS10B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Plectin/S10, N-terminal (InterPro:IPR005326); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S10 (RPS10C) (TAIR:AT5G52650.1); Has 4999 Blast hits to 3072 proteins in 404 species: Archae - 0; Bacteria - 734; Metazoa - 2249; Fungi - 471; Plants - 866; Viruses - 49; Other Eukaryotes - 630 (source: NCBI BLink).  protein_id AT5G41520.1p  transcript_id AT5G41520.1  protein_id AT5G41520.1p  transcript_id AT5G41520.1  
At5g41530	chr5:016611660	0.0	W/16611660-16612088	AT5G41530.1  CDS  gene_syn MBK23.5, MBK23_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related (TAIR:AT4G00270.1); Has 21 Blast hits to 21 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G41530.1p  transcript_id AT5G41530.1  protein_id AT5G41530.1p  transcript_id AT5G41530.1  
At5g41540	chr5:016615600	0.0	C/16615600-16616063,16614373-16615480,16613979-16614275,16612659-16613906	AT5G41540.1  CDS  gene_syn MBK23.6, MBK23_6  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G41550.1); Has 14453 Blast hits to 11438 proteins in 458 species: Archae - 16; Bacteria - 721; Metazoa - 1639; Fungi - 71; Plants - 11507; Viruses - 0; Other Eukaryotes - 499 (source: NCBI BLink).  protein_id AT5G41540.1p  transcript_id AT5G41540.1  protein_id AT5G41540.1p  transcript_id AT5G41540.1  
At5g41550	chr5:016620316	0.0	C/16620316-16620785,16619107-16620214,16618698-16618994,16617232-16618614	AT5G41550.1  CDS  gene_syn MBK23.7, MBK23_7  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G41750.2); Has 14852 Blast hits to 11899 proteins in 489 species: Archae - 14; Bacteria - 777; Metazoa - 1585; Fungi - 76; Plants - 12011; Viruses - 2; Other Eukaryotes - 387 (source: NCBI BLink).  protein_id AT5G41550.1p  transcript_id AT5G41550.1  protein_id AT5G41550.1p  transcript_id AT5G41550.1  
At5g41560	chr5:016622536	0.0	C/16622536-16622619,16622087-16622147,16621747-16621808,16621427-16621525	AT5G41560.1  CDS  gene_syn MBK23.8, MBK23_8  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin ligase, Det1/DDB1-complexing (InterPro:IPR018276); Has 59 Blast hits to 59 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G41560.1p  transcript_id AT5G41560.1  protein_id AT5G41560.1p  transcript_id AT5G41560.1  
At5g41570	chr5:016624220	0.0	W/16624220-16624572,16625503-16625689	AT5G41570.1  CDS  gene_syn AtWRKY24, MBK23.9, MBK23_9, WRKY24  gene WRKY24  function member of WRKY Transcription Factor; Group II-c  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY24; transcription factor  note WRKY24; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY56; transcription factor (TAIR:AT1G64000.1); Has 2022 Blast hits to 1732 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2009; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT5G41570.1p  transcript_id AT5G41570.1  protein_id AT5G41570.1p  transcript_id AT5G41570.1  
At5g41580	chr5:016630481	0.0	C/16630481-16630659,16630253-16630325,16630090-16630155,16629826-16629891,16629659-16629741,16629416-16629467,16629264-16629335,16628962-16629029,16628827-16628875,16628660-16628744,16628476-16628577,16628274-16628325,16628140-16628191,16627892-16628008,16627133-16627801,16626563-16627060	AT5G41580.1  CDS  gene_syn MBK23.10, MBK23_10  go_function zinc ion binding|GO:0008270||IEA  go_function zinc ion binding|GO:0008270||ISS  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MIZ-type (InterPro:IPR004181); BEST Arabidopsis thaliana protein match is: EMB3001 (embryo defective 3001); zinc ion binding (TAIR:AT1G08910.1); Has 2085 Blast hits to 1500 proteins in 210 species: Archae - 4; Bacteria - 71; Metazoa - 1036; Fungi - 418; Plants - 85; Viruses - 29; Other Eukaryotes - 442 (source: NCBI BLink).  protein_id AT5G41580.1p  transcript_id AT5G41580.1  protein_id AT5G41580.1p  transcript_id AT5G41580.1  
At5g41590	chr5:016633615	0.0	C/16633615-16633896,16632221-16632604	AT5G41590.1  CDS  gene_syn MBK23.11, MBK23_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38640.1); Has 189 Blast hits to 189 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 189; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G41590.1p  transcript_id AT5G41590.1  protein_id AT5G41590.1p  transcript_id AT5G41590.1  
At5g41600	chr5:016636230	0.0	W/16636230-16636431,16636649-16636829,16636909-16637050,16637135-16637204,16637294-16637472	AT5G41600.1  CDS  gene_syn BTI3, MBK23.13, MBK23_13, VIRB2-INTERACTING PROTEIN 3  gene BTI3  go_component plasma membrane|GO:0005886|14506206|IDA  go_component endoplasmic reticulum|GO:0005783||ISS  go_process biological_process|GO:0008150||ND  product BTI3 (VIRB2-INTERACTING PROTEIN 3)  note VIRB2-INTERACTING PROTEIN 3 (BTI3); INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: reticulon family protein (RTNLB3) (TAIR:AT1G64090.1); Has 939 Blast hits to 939 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 648; Fungi - 2; Plants - 271; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT5G41600.1p  transcript_id AT5G41600.1  protein_id AT5G41600.1p  transcript_id AT5G41600.1  
At5g41605	chr5:016638166	0.0	W/16638166-16638249	AT5G41605.1  tRNA  gene_syn 67761.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: CAA)  transcript_id AT5G41605.1  
At5g41612	chr5:016638579	0.0	W/16638579-16639863	AT5G41612.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT5G41610  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G41612.1  
At5g41610	chr5:016639867	0.0	C/16639867-16640859,16638554-16639789	AT5G41610.2  CDS  gene_syn ATCHX18, CATION/H+ EXCHANGER 18, CHX18, MBK23.12, MBK23_12  gene ATCHX18  function member of Putative Na+/H+ antiporter family  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|IC  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product ATCHX18; monovalent cation:proton antiporter/ sodium:hydrogen antiporter  note ATCHX18; FUNCTIONS IN: monovalent cation:proton antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: ATCHX19 (CATION/H+ EXCHANGER 19); monovalent cation:proton antiporter/ sodium:hydrogen antiporter (TAIR:AT3G17630.1); Has 5780 Blast hits to 5759 proteins in 1185 species: Archae - 217; Bacteria - 4271; Metazoa - 52; Fungi - 150; Plants - 292; Viruses - 0; Other Eukaryotes - 798 (source: NCBI BLink).  protein_id AT5G41610.2p  transcript_id AT5G41610.2  protein_id AT5G41610.2p  transcript_id AT5G41610.2  
At5g41610	chr5:016640952	0.0	C/16640952-16641146,16639867-16640868,16638554-16639789	AT5G41610.1  CDS  gene_syn ATCHX18, CATION/H+ EXCHANGER 18, CHX18, MBK23.12, MBK23_12  gene ATCHX18  function member of Putative Na+/H+ antiporter family  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|IC  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product ATCHX18; monovalent cation:proton antiporter/ sodium:hydrogen antiporter  note ATCHX18; FUNCTIONS IN: monovalent cation:proton antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: ATCHX19 (CATION/H+ EXCHANGER 19); monovalent cation:proton antiporter/ sodium:hydrogen antiporter (TAIR:AT3G17630.1); Has 6182 Blast hits to 6161 proteins in 1214 species: Archae - 247; Bacteria - 4508; Metazoa - 68; Fungi - 150; Plants - 297; Viruses - 0; Other Eukaryotes - 912 (source: NCBI BLink).  protein_id AT5G41610.1p  transcript_id AT5G41610.1  protein_id AT5G41610.1p  transcript_id AT5G41610.1  
At5g41614	chr5:016644076	0.0	C/16644076-16644195	AT5G41614.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G41614.1p  transcript_id AT5G41614.1  protein_id AT5G41614.1p  transcript_id AT5G41614.1  
At5g41620	chr5:016646330	0.0	W/16646330-16646698,16647197-16647322,16647400-16648776	AT5G41620.1  CDS  gene_syn MBK23.17, MBK23_17  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: intracellular protein transport protein USO1-related (TAIR:AT1G64180.1); Has 2568 Blast hits to 2157 proteins in 267 species: Archae - 27; Bacteria - 258; Metazoa - 955; Fungi - 181; Plants - 134; Viruses - 0; Other Eukaryotes - 1013 (source: NCBI BLink).  protein_id AT5G41620.1p  transcript_id AT5G41620.1  protein_id AT5G41620.1p  transcript_id AT5G41620.1  
At5g41630	chr5:016650282	0.0	W/16650282-16651274,16651373-16651513,16651602-16651835	AT5G41630.1  CDS  gene_syn MBK23.18, MBK23_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G41840.1); Has 1088 Blast hits to 1058 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1088; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G41630.1p  transcript_id AT5G41630.1  protein_id AT5G41630.1p  transcript_id AT5G41630.1  
At5g41640	chr5:016654588	0.0	C/16654588-16654635,16654157-16654288,16654002-16654047,16653337-16653704	AT5G41640.1  CDS  gene_syn MBK23.16, MBK23_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24388.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G41640.1p  transcript_id AT5G41640.1  protein_id AT5G41640.1p  transcript_id AT5G41640.1  
At5g41650	chr5:016654956	0.0	W/16654956-16655119,16655292-16655424,16655522-16655578	AT5G41650.1  CDS  gene_syn MBK23.15, MBK23_15  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function catalytic activity|GO:0003824||ISS  product lactoylglutathione lyase family protein / glyoxalase I family protein  note lactoylglutathione lyase family protein / glyoxalase I family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: lactoylglutathione lyase family protein / glyoxalase I family protein (TAIR:AT1G64185.1); Has 40 Blast hits to 40 proteins in 17 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G41650.1p  transcript_id AT5G41650.1  protein_id AT5G41650.1p  transcript_id AT5G41650.1  
At5g41660	chr5:016657016	0.0	W/16657016-16657648	AT5G41660.1  CDS  gene_syn MBK23.19, MBK23_19  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44430.1); Has 13 Blast hits to 13 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G41660.1p  transcript_id AT5G41660.1  protein_id AT5G41660.1p  transcript_id AT5G41660.1  
At5g41663	chr5:016660469	0.0	C/16660469-16660640	AT5G41663.1  miRNA  gene_syn MICRORNA 319, MICRORNA 319B, MIR319, MIR319B  gene MIR319B  function Encodes a microRNA that targets several TCP family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGGACUGAAGGGAGCUCCCU  go_component cellular_component|GO:0005575||ND  go_process gene silencing by miRNA|GO:0035195|15200956|TAS  go_function molecular_function|GO:0003674||ND  product MIR319B (MICRORNA 319B); miRNA  transcript_id AT5G41663.1  
At5g41670	chr5:016665647	0.0	C/16665647-16667110	AT5G41670.1  CDS  gene_syn MBK23.20, MBK23_20  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function catalytic activity|GO:0003824||IEA  go_function phosphogluconate dehydrogenase (decarboxylating) activity|GO:0004616||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_function coenzyme binding|GO:0050662||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process response to sucrose stimulus|GO:0009744|16463203|IEP  go_process response to glucose stimulus|GO:0009749|16463203|IEP  go_process response to fructose stimulus|GO:0009750|16463203|IEP  go_function phosphogluconate dehydrogenase (decarboxylating) activity|GO:0004616||ISS  product 6-phosphogluconate dehydrogenase family protein  note 6-phosphogluconate dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: response to fructose stimulus, response to cadmium ion, response to sucrose stimulus, response to glucose stimulus; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), 6-phosphogluconate dehydrogenase, decarboxylating (InterPro:IPR006113), 6-phosphogluconate dehydrogenase, C-terminal (InterPro:IPR006114), 6-phosphogluconate dehydrogenase (InterPro:IPR006183), NAD(P)-binding (InterPro:IPR016040), Fibritin/6-phosphogluconate dehydrogenase, C-terminal extension (InterPro:IPR012284); BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase family protein (TAIR:AT1G64190.1); Has 8481 Blast hits to 8387 proteins in 1495 species: Archae - 46; Bacteria - 4731; Metazoa - 542; Fungi - 166; Plants - 211; Viruses - 2; Other Eukaryotes - 2783 (source: NCBI BLink).  protein_id AT5G41670.1p  transcript_id AT5G41670.1  protein_id AT5G41670.1p  transcript_id AT5G41670.1  
At5g41670	chr5:016665647	0.0	C/16665647-16667110	AT5G41670.2  CDS  gene_syn MBK23.20, MBK23_20  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function catalytic activity|GO:0003824||IEA  go_function phosphogluconate dehydrogenase (decarboxylating) activity|GO:0004616||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_function coenzyme binding|GO:0050662||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process response to sucrose stimulus|GO:0009744|16463203|IEP  go_process response to glucose stimulus|GO:0009749|16463203|IEP  go_process response to fructose stimulus|GO:0009750|16463203|IEP  go_function phosphogluconate dehydrogenase (decarboxylating) activity|GO:0004616||ISS  product 6-phosphogluconate dehydrogenase family protein  note 6-phosphogluconate dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: response to fructose stimulus, response to cadmium ion, response to sucrose stimulus, response to glucose stimulus; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), 6-phosphogluconate dehydrogenase, decarboxylating (InterPro:IPR006113), 6-phosphogluconate dehydrogenase, C-terminal (InterPro:IPR006114), 6-phosphogluconate dehydrogenase (InterPro:IPR006183), NAD(P)-binding (InterPro:IPR016040), Fibritin/6-phosphogluconate dehydrogenase, C-terminal extension (InterPro:IPR012284); BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase family protein (TAIR:AT1G64190.1); Has 8481 Blast hits to 8387 proteins in 1495 species: Archae - 46; Bacteria - 4731; Metazoa - 542; Fungi - 166; Plants - 211; Viruses - 2; Other Eukaryotes - 2783 (source: NCBI BLink).  protein_id AT5G41670.2p  transcript_id AT5G41670.2  protein_id AT5G41670.2p  transcript_id AT5G41670.2  
At5g41675	chr5:016667436	0.0	C/16667436-16667507	AT5G41675.1  tRNA  gene_syn 67761.TRNA-MET-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Met (anticodon: CAT)  transcript_id AT5G41675.1  
At5g41680	chr5:016668119	0.0	W/16668119-16668551,16668630-16669198	AT5G41680.2  CDS  gene_syn MBK23.22, MBK23_22  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT1G64210.1); Has 39081 Blast hits to 38801 proteins in 1315 species: Archae - 22; Bacteria - 2650; Metazoa - 14092; Fungi - 2289; Plants - 14158; Viruses - 223; Other Eukaryotes - 5647 (source: NCBI BLink).  protein_id AT5G41680.2p  transcript_id AT5G41680.2  protein_id AT5G41680.2p  transcript_id AT5G41680.2  
At5g41680	chr5:016668119	0.0	W/16668119-16669198	AT5G41680.1  CDS  gene_syn MBK23.22, MBK23_22  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT1G64210.1); Has 27286 Blast hits to 27036 proteins in 1082 species: Archae - 14; Bacteria - 1500; Metazoa - 8187; Fungi - 1243; Plants - 13172; Viruses - 127; Other Eukaryotes - 3043 (source: NCBI BLink).  protein_id AT5G41680.1p  transcript_id AT5G41680.1  protein_id AT5G41680.1p  transcript_id AT5G41680.1  
At5g41685	chr5:016669419	0.0	C/16669419-16669646	AT5G41685.1  CDS  go_component mitochondrial outer membrane|GO:0005741||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||IEA  go_function protein transporter activity|GO:0008565||ISS  product mitochondrial import receptor subunit TOM7 / translocase of outer membrane 7 kDa subunit (TOM7.1)  note mitochondrial import receptor subunit TOM7 / translocase of outer membrane 7 kDa subunit (TOM7.1); FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport; LOCATED IN: mitochondrial outer membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial import translocase, subunit Tom7 (InterPro:IPR012621); BEST Arabidopsis thaliana protein match is: TOM7-2 (TRANSLOCASE OF OUTER MEMBRANE 7 KDA SUBUNIT 2); P-P-bond-hydrolysis-driven protein transmembrane transporter (TAIR:AT1G64220.1); Has 39 Blast hits to 39 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G41685.1p  transcript_id AT5G41685.1  protein_id AT5G41685.1p  transcript_id AT5G41685.1  
At5g41690	chr5:016674168	0.0	C/16674168-16674189,16674002-16674075,16673823-16673909,16673632-16673699,16673445-16673562,16673271-16673359,16673150-16673173,16672992-16673061,16672765-16672814,16672567-16672684,16672372-16672460,16672236-16672259,16672061-16672130,16671807-16671874,16671610-16671727,16671441-16671526,16671299-16671322,16671108-16671195,16670871-16670938,16670673-16670790,16670485-16670573,16670356-16670379,16670126-16670243	AT5G41690.1  CDS  gene_syn MBK23.23, MBK23_23  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||ISS  product RNA binding / nucleic acid binding / nucleotide binding  note RNA binding / nucleic acid binding / nucleotide binding; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: polyadenylate-binding protein, putative / PABP, putative (TAIR:AT1G45100.1); Has 12774 Blast hits to 7705 proteins in 378 species: Archae - 6; Bacteria - 284; Metazoa - 6818; Fungi - 2131; Plants - 2120; Viruses - 0; Other Eukaryotes - 1415 (source: NCBI BLink).  protein_id AT5G41690.1p  transcript_id AT5G41690.1  protein_id AT5G41690.1p  transcript_id AT5G41690.1  
At5g41700	chr5:016676072	0.0	W/16676072-16676135,16676483-16676619,16676782-16676886,16677080-16677223	AT5G41700.4  CDS  gene_syn ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ATUBC8, MBK23.24, MBK23_24, UBC8, UBIQUITIN CONJUGATING ENZYME, UBIQUITIN CONJUGATING ENZYME 8  gene UBC8  function One of the polypeptides that constitute the ubiquitin-conjugating enzyme E2  go_component nucleus|GO:0005634|17355433|IDA  go_component cytoplasm|GO:0005737|17355433|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|8220461|TAS  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|8220461|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|8220461|ISS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|16792696|IPI  product UBC8 (UBIQUITIN CONJUGATING ENZYME 8); protein binding / ubiquitin-protein ligase  note UBIQUITIN CONJUGATING ENZYME 8 (UBC8); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme, putative (TAIR:AT1G64230.2); Has 7886 Blast hits to 7866 proteins in 311 species: Archae - 0; Bacteria - 0; Metazoa - 3784; Fungi - 1539; Plants - 1149; Viruses - 22; Other Eukaryotes - 1392 (source: NCBI BLink).  protein_id AT5G41700.4p  transcript_id AT5G41700.4  protein_id AT5G41700.4p  transcript_id AT5G41700.4  
At5g41700	chr5:016676072	0.0	W/16676072-16676141,16676492-16676619,16676782-16676886,16677080-16677223	AT5G41700.1  CDS  gene_syn ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ATUBC8, MBK23.24, MBK23_24, UBC8, UBIQUITIN CONJUGATING ENZYME, UBIQUITIN CONJUGATING ENZYME 8  gene UBC8  function One of the polypeptides that constitute the ubiquitin-conjugating enzyme E2  go_component nucleus|GO:0005634|17355433|IDA  go_component cytoplasm|GO:0005737|17355433|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|8220461|TAS  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|8220461|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|8220461|ISS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|16792696|IPI  product UBC8 (UBIQUITIN CONJUGATING ENZYME 8); protein binding / ubiquitin-protein ligase  note UBIQUITIN CONJUGATING ENZYME 8 (UBC8); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme, putative (TAIR:AT1G64230.2); Has 7870 Blast hits to 7850 proteins in 311 species: Archae - 0; Bacteria - 0; Metazoa - 3782; Fungi - 1539; Plants - 1140; Viruses - 22; Other Eukaryotes - 1387 (source: NCBI BLink).  protein_id AT5G41700.1p  transcript_id AT5G41700.1  protein_id AT5G41700.1p  transcript_id AT5G41700.1  
At5g41700	chr5:016676072	0.0	W/16676072-16676141,16676492-16676619,16676782-16676886,16677080-16677223	AT5G41700.2  CDS  gene_syn ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ATUBC8, MBK23.24, MBK23_24, UBC8, UBIQUITIN CONJUGATING ENZYME, UBIQUITIN CONJUGATING ENZYME 8  gene UBC8  function One of the polypeptides that constitute the ubiquitin-conjugating enzyme E2  go_component nucleus|GO:0005634|17355433|IDA  go_component cytoplasm|GO:0005737|17355433|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|8220461|TAS  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|8220461|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|8220461|ISS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|16792696|IPI  product UBC8 (UBIQUITIN CONJUGATING ENZYME 8); protein binding / ubiquitin-protein ligase  note UBIQUITIN CONJUGATING ENZYME 8 (UBC8); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme, putative (TAIR:AT1G64230.2); Has 7870 Blast hits to 7850 proteins in 311 species: Archae - 0; Bacteria - 0; Metazoa - 3782; Fungi - 1539; Plants - 1140; Viruses - 22; Other Eukaryotes - 1387 (source: NCBI BLink).  protein_id AT5G41700.2p  transcript_id AT5G41700.2  protein_id AT5G41700.2p  transcript_id AT5G41700.2  
At5g41700	chr5:016676072	0.0	W/16676072-16676141,16676492-16676619,16676782-16677021	AT5G41700.3  CDS  gene_syn ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ATUBC8, MBK23.24, MBK23_24, UBC8, UBIQUITIN CONJUGATING ENZYME, UBIQUITIN CONJUGATING ENZYME 8  gene UBC8  function One of the polypeptides that constitute the ubiquitin-conjugating enzyme E2  go_component nucleus|GO:0005634|17355433|IDA  go_component cytoplasm|GO:0005737|17355433|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|8220461|TAS  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|8220461|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|8220461|ISS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|16792696|IPI  product UBC8 (UBIQUITIN CONJUGATING ENZYME 8); protein binding / ubiquitin-protein ligase  note UBIQUITIN CONJUGATING ENZYME 8 (UBC8); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC10 (ubiquitin-conjugating enzyme 10); ubiquitin-protein ligase (TAIR:AT5G53300.2); Has 7575 Blast hits to 7562 proteins in 306 species: Archae - 0; Bacteria - 0; Metazoa - 3623; Fungi - 1495; Plants - 1123; Viruses - 19; Other Eukaryotes - 1315 (source: NCBI BLink).  protein_id AT5G41700.3p  transcript_id AT5G41700.3  protein_id AT5G41700.3p  transcript_id AT5G41700.3  
At5g41710	chr5:016677827	0.0	W/16677827-16679816	AT5G41710.1  mRNA_TE_gene  pseudo  gene_syn MBK23.25, MBK23_25  note Transposable element gene, Mutator-like transposase family, has a 6.2e-18 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At5g41720	chr5:016683342	0.0	C/16683342-16683905	AT5G41720.1  CDS  gene_syn MBK23.26, MBK23_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box protein-related (TAIR:AT1G64290.1); Has 28 Blast hits to 28 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G41720.1p  transcript_id AT5G41720.1  protein_id AT5G41720.1p  transcript_id AT5G41720.1  
At5g41730	chr5:016685207	0.0	C/16685207-16687145,16684914-16685110	AT5G41730.1  CDS  gene_syn MUF8.1, MUF8_1  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Protein of unknown function DUF1221 (InterPro:IPR010632), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G64300.2); Has 51529 Blast hits to 51066 proteins in 1469 species: Archae - 32; Bacteria - 3418; Metazoa - 24290; Fungi - 3604; Plants - 10958; Viruses - 172; Other Eukaryotes - 9055 (source: NCBI BLink).  protein_id AT5G41730.1p  transcript_id AT5G41730.1  protein_id AT5G41730.1p  transcript_id AT5G41730.1  
At5g41740	chr5:016688687	0.0	W/16688687-16689004,16689044-16689165,16689263-16690268,16690369-16690455,16690545-16690838,16690922-16692227,16692337-16692381,16692470-16692491,16692561-16692661,16692758-16692801	AT5G41740.2  CDS  gene_syn MUF8.2, MUF8_2  go_component chloroplast|GO:0009507||IEA  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat 3 (InterPro:IPR011713), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G41750.2).  protein_id AT5G41740.2p  transcript_id AT5G41740.2  protein_id AT5G41740.2p  transcript_id AT5G41740.2  
At5g41740	chr5:016688687	0.0	W/16688687-16689004,16689044-16689165,16689263-16690268,16690369-16690455,16690545-16690838,16690922-16692235	AT5G41740.1  CDS  gene_syn MUF8.2, MUF8_2  go_component chloroplast|GO:0009507||IEA  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat 3 (InterPro:IPR011713), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G41750.2); Has 14730 Blast hits to 12106 proteins in 449 species: Archae - 8; Bacteria - 983; Metazoa - 1524; Fungi - 54; Plants - 11781; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink).  protein_id AT5G41740.1p  transcript_id AT5G41740.1  protein_id AT5G41740.1p  transcript_id AT5G41740.1  
At5g41750	chr5:016694047	0.0	W/16694047-16694516,16694613-16695714,16695805-16696101,16696190-16697527	AT5G41750.1  CDS  gene_syn MUF8.3, MUF8_3  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G41740.1); Has 14787 Blast hits to 11846 proteins in 486 species: Archae - 15; Bacteria - 772; Metazoa - 1493; Fungi - 83; Plants - 11992; Viruses - 0; Other Eukaryotes - 432 (source: NCBI BLink).  protein_id AT5G41750.1p  transcript_id AT5G41750.1  protein_id AT5G41750.1p  transcript_id AT5G41750.1  
At5g41750	chr5:016694047	0.0	W/16694047-16694516,16694613-16695714,16695805-16696101,16696190-16697527	AT5G41750.2  CDS  gene_syn MUF8.3, MUF8_3  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G41740.1); Has 14787 Blast hits to 11846 proteins in 486 species: Archae - 15; Bacteria - 772; Metazoa - 1493; Fungi - 83; Plants - 11992; Viruses - 0; Other Eukaryotes - 432 (source: NCBI BLink).  protein_id AT5G41750.2p  transcript_id AT5G41750.2  protein_id AT5G41750.2p  transcript_id AT5G41750.2  
At5g41755	chr5:016700028	0.0	W/16700028-16705892	AT5G41755.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.5e-36 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)  
At5g41760	chr5:016706978	0.0	W/16706978-16707037,16707555-16707638,16707739-16707959,16708045-16708123,16708312-16708481,16708623-16708809,16708901-16708978,16709061-16709204	AT5G41760.1  CDS  gene_syn K16L22.3, K16L22_3  go_component Golgi membrane|GO:0000139||IEA  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process carbohydrate transport|GO:0008643||IEA  go_process nucleotide-sugar transport|GO:0015780||IEA  go_process nucleotide-sugar transport|GO:0015780||ISS  go_function nucleotide-sugar transmembrane transporter activity|GO:0005338||ISS  go_function CMP-sialic acid transmembrane transporter activity|GO:0005456||ISS  product nucleotide-sugar transporter family protein  note nucleotide-sugar transporter family protein; FUNCTIONS IN: nucleotide-sugar transmembrane transporter activity, CMP-sialic acid transmembrane transporter activity; INVOLVED IN: carbohydrate transport, nucleotide-sugar transport; LOCATED IN: endomembrane system, integral to membrane, Golgi membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide-sugar transporter (InterPro:IPR007271), UDP-galactose transporter (InterPro:IPR004689); BEST Arabidopsis thaliana protein match is: nucleotide-sugar transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT4G35335.1); Has 819 Blast hits to 807 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 511; Fungi - 85; Plants - 92; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).  protein_id AT5G41760.1p  transcript_id AT5G41760.1  protein_id AT5G41760.1p  transcript_id AT5G41760.1  
At5g41760	chr5:016706978	0.0	W/16706978-16707037,16707555-16707638,16707739-16707959,16708045-16708123,16708312-16708481,16708623-16708809,16708901-16708978,16709061-16709204	AT5G41760.2  CDS  gene_syn K16L22.3, K16L22_3  go_component Golgi membrane|GO:0000139||IEA  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process carbohydrate transport|GO:0008643||IEA  go_process nucleotide-sugar transport|GO:0015780||IEA  go_process nucleotide-sugar transport|GO:0015780||ISS  go_function nucleotide-sugar transmembrane transporter activity|GO:0005338||ISS  go_function CMP-sialic acid transmembrane transporter activity|GO:0005456||ISS  product nucleotide-sugar transporter family protein  note nucleotide-sugar transporter family protein; FUNCTIONS IN: nucleotide-sugar transmembrane transporter activity, CMP-sialic acid transmembrane transporter activity; INVOLVED IN: carbohydrate transport, nucleotide-sugar transport; LOCATED IN: endomembrane system, integral to membrane, Golgi membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide-sugar transporter (InterPro:IPR007271), UDP-galactose transporter (InterPro:IPR004689); BEST Arabidopsis thaliana protein match is: nucleotide-sugar transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT4G35335.1); Has 819 Blast hits to 807 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 511; Fungi - 85; Plants - 92; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).  protein_id AT5G41760.2p  transcript_id AT5G41760.2  protein_id AT5G41760.2p  transcript_id AT5G41760.2  
At5g41761	chr5:016711437	0.0	W/16711437-16711742	AT5G41761.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 47 Blast hits to 47 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G41761.1p  transcript_id AT5G41761.1  protein_id AT5G41761.1p  transcript_id AT5G41761.1  
At5g41765	chr5:016716938	0.0	C/16716938-16717064,16716552-16716883	AT5G41765.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00232.1); Has 10 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G41765.1p  transcript_id AT5G41765.1  protein_id AT5G41765.1p  transcript_id AT5G41765.1  
At5g41770	chr5:016718021	0.0	W/16718021-16719180,16719492-16719557,16719665-16719809,16719904-16720122,16720217-16720430,16720520-16720715,16720819-16720936	AT5G41770.1  CDS  gene_syn K16L22.5, K16L22_5  go_component intracellular|GO:0005622||IEA  go_process RNA processing|GO:0006396||IEA  go_function binding|GO:0005488||IEA  go_component intracellular|GO:0005622||ISS  go_process RNA processing|GO:0006396||ISS  product crooked neck protein, putative / cell cycle protein, putative  note crooked neck protein, putative / cell cycle protein, putative; FUNCTIONS IN: binding; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: crooked neck protein, putative / cell cycle protein, putative (TAIR:AT5G45990.1); Has 4006 Blast hits to 1663 proteins in 188 species: Archae - 11; Bacteria - 53; Metazoa - 1785; Fungi - 1139; Plants - 531; Viruses - 0; Other Eukaryotes - 487 (source: NCBI BLink).  protein_id AT5G41770.1p  transcript_id AT5G41770.1  protein_id AT5G41770.1p  transcript_id AT5G41770.1  
At5g41774	chr5:016722097	0.0	C/16722097-16722288	AT5G41774.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G41774.1p  transcript_id AT5G41774.1  protein_id AT5G41774.1p  transcript_id AT5G41774.1  
At5g41780	chr5:016723075	0.0	W/16723075-16723093,16723163-16723973,16724050-16724833	AT5G41780.1  CDS  gene_syn K16L22.6, K16L22_6  go_process biological_process|GO:0008150||ND  product myosin heavy chain-related  note myosin heavy chain-related; INVOLVED IN: biological_process unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT1G64320.1); Has 68723 Blast hits to 38167 proteins in 1450 species: Archae - 759; Bacteria - 6188; Metazoa - 34916; Fungi - 4359; Plants - 2166; Viruses - 300; Other Eukaryotes - 20035 (source: NCBI BLink).  protein_id AT5G41780.1p  transcript_id AT5G41780.1  protein_id AT5G41780.1p  transcript_id AT5G41780.1  
At5g41790	chr5:016727530	0.0	W/16727530-16727623,16727725-16732391	AT5G41790.1  CDS  gene_syn CIP1, COP1-INTERACTIVE PROTEIN 1, K16L22.7, K16L22_7  gene CIP1  function encodes a protein that physically interacts specifically with the putative coiled-coil region of COP1 in vitro. In hypocotyl and cotyledon protoplasts, it is associated to the cytoskeleton, but not in the root. expression is not regulated by light.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component cytoskeleton|GO:0005856|7753789|IDA  go_process regulation of protein import into nucleus|GO:0042306|7753789|TAS  go_function protein binding|GO:0005515|7753789|IPI  product CIP1 (COP1-INTERACTIVE PROTEIN 1); protein binding  note COP1-INTERACTIVE PROTEIN 1 (CIP1); FUNCTIONS IN: protein binding; INVOLVED IN: regulation of protein import into nucleus; LOCATED IN: cytoskeleton, plasma membrane, chloroplast, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT1G64330.1); Has 449672 Blast hits to 138657 proteins in 2866 species: Archae - 5766; Bacteria - 98141; Metazoa - 183145; Fungi - 29441; Plants - 16108; Viruses - 2865; Other Eukaryotes - 114206 (source: NCBI BLink).  protein_id AT5G41790.1p  transcript_id AT5G41790.1  protein_id AT5G41790.1p  transcript_id AT5G41790.1  
At5g41800	chr5:016733842	0.0	W/16733842-16733926,16733998-16734228,16734501-16734598,16734689-16734875,16734961-16735091,16735173-16735409,16735499-16735888	AT5G41800.1  CDS  gene_syn K16L22.8, K16L22_8  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product amino acid transporter family protein  note amino acid transporter family protein; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid transporter family protein (TAIR:AT1G08230.2); Has 2047 Blast hits to 2040 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 571; Fungi - 343; Plants - 817; Viruses - 0; Other Eukaryotes - 316 (source: NCBI BLink).  protein_id AT5G41800.1p  transcript_id AT5G41800.1  protein_id AT5G41800.1p  transcript_id AT5G41800.1  
At5g41810	chr5:016738302	0.0	W/16738302-16738551,16738858-16739474	AT5G41810.1  CDS  gene_syn K16L22.9, K16L22_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64340.1); Has 862 Blast hits to 673 proteins in 114 species: Archae - 0; Bacteria - 35; Metazoa - 196; Fungi - 97; Plants - 45; Viruses - 2; Other Eukaryotes - 487 (source: NCBI BLink).  protein_id AT5G41810.1p  transcript_id AT5G41810.1  protein_id AT5G41810.1p  transcript_id AT5G41810.1  
At5g41810	chr5:016738302	0.0	W/16738302-16738551,16738885-16739474	AT5G41810.2  CDS  gene_syn K16L22.9, K16L22_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64340.1); Has 488 Blast hits to 413 proteins in 84 species: Archae - 0; Bacteria - 19; Metazoa - 119; Fungi - 45; Plants - 34; Viruses - 5; Other Eukaryotes - 266 (source: NCBI BLink).  protein_id AT5G41810.2p  transcript_id AT5G41810.2  protein_id AT5G41810.2p  transcript_id AT5G41810.2  
At5g41820	chr5:016740804	0.0	W/16740804-16740913,16740987-16741146,16741236-16741441,16741508-16741615,16741693-16742454,16742544-16742712,16742794-16742965,16743057-16743433	AT5G41820.1  CDS  gene_syn K16L22.10, K16L22_10  go_process protein amino acid prenylation|GO:0018346||IEA  go_function protein binding|GO:0005515||IEA  go_function protein prenyltransferase activity|GO:0008318||IEA  product geranylgeranyl transferase alpha subunit-related / RAB geranylgeranyltransferase alpha subunit-related  note geranylgeranyl transferase alpha subunit-related / RAB geranylgeranyltransferase alpha subunit-related; FUNCTIONS IN: protein binding, protein prenyltransferase activity; INVOLVED IN: protein amino acid prenylation; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611), Protein prenyltransferase (InterPro:IPR008940), Protein prenyltransferase, alpha subunit (InterPro:IPR002088); BEST Arabidopsis thaliana protein match is: protein prenyltransferase (TAIR:AT4G24490.2); Has 2411 Blast hits to 2058 proteins in 239 species: Archae - 3; Bacteria - 150; Metazoa - 1394; Fungi - 237; Plants - 294; Viruses - 0; Other Eukaryotes - 333 (source: NCBI BLink).  protein_id AT5G41820.1p  transcript_id AT5G41820.1  protein_id AT5G41820.1p  transcript_id AT5G41820.1  
At5g41830	chr5:016744510	0.0	C/16744510-16745334,16744277-16744417,16743762-16744187	AT5G41830.1  CDS  gene_syn K16L22.11, K16L22_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G00320.1); Has 452 Blast hits to 438 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 452; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G41830.1p  transcript_id AT5G41830.1  protein_id AT5G41830.1p  transcript_id AT5G41830.1  
At5g41835	chr5:016748798	0.0	W/16748798-16753756	AT5G41835.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.2e-43 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At5g41840	chr5:016755250	0.0	C/16755250-16756263,16754987-16755127,16754436-16754903	AT5G41840.1  CDS  gene_syn K16L22.13, K16L22_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product F-box family protein  note F-box family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), EF-HAND 1 (InterPro:IPR018247), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G00320.1); Has 1297 Blast hits to 1255 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 1290; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G41840.1p  transcript_id AT5G41840.1  protein_id AT5G41840.1p  transcript_id AT5G41840.1  
At5g41850	chr5:016757676	0.0	C/16757676-16757791,16757539-16757600,16757323-16757458,16757160-16757235,16757010-16757075,16756698-16756916	AT5G41850.1  CDS  gene_syn K16L22.14, K16L22_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 566 Blast hits to 566 proteins in 212 species: Archae - 0; Bacteria - 319; Metazoa - 169; Fungi - 2; Plants - 15; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT5G41850.1p  transcript_id AT5G41850.1  protein_id AT5G41850.1p  transcript_id AT5G41850.1  
At5g41860	chr5:016757951	0.0	W/16757951-16758529	AT5G41860.1  CDS  gene_syn K16L22.15, K16L22_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G41860.1p  transcript_id AT5G41860.1  protein_id AT5G41860.1p  transcript_id AT5G41860.1  
At5g41870	chr5:016760146	0.0	C/16760146-16760490,16759933-16760053,16759677-16759851,16759537-16759607,16758817-16759454	AT5G41870.1  CDS  gene_syn K16L22.16, K16L22_16  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT4G23820.1); Has 2476 Blast hits to 2470 proteins in 319 species: Archae - 2; Bacteria - 579; Metazoa - 8; Fungi - 941; Plants - 842; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT5G41870.1p  transcript_id AT5G41870.1  protein_id AT5G41870.1p  transcript_id AT5G41870.1  
At5g41880	chr5:016761117	0.0	W/16761117-16761180,16761263-16761313,16761417-16761592,16761682-16761759,16761857-16761968,16762193-16762277,16762386-16762437,16762529-16762590,16762670-16762785,16762875-16762996,16763136-16763204,16763341-16763398,16763490-16763563,16763670-16763721,16763807-16763886,16764012-16764074	AT5G41880.1  CDS  gene_syn K16L22.17, K16L22_17, POLA3, POLA4  gene POLA3  go_process DNA replication, synthesis of RNA primer|GO:0006269||IEA  go_function DNA primase activity|GO:0003896||IEA  go_process DNA replication|GO:0006260||ISS  go_function DNA primase activity|GO:0003896||ISS  product POLA3; DNA primase  note POLA3; FUNCTIONS IN: DNA primase activity; INVOLVED IN: DNA replication, synthesis of RNA primer, DNA replication; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA primase, small subunit (InterPro:IPR002755), DNA primase, small subunit, eukaryotic and archaeal (InterPro:IPR014052); Has 380 Blast hits to 373 proteins in 185 species: Archae - 62; Bacteria - 0; Metazoa - 110; Fungi - 99; Plants - 18; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).  protein_id AT5G41880.1p  transcript_id AT5G41880.1  protein_id AT5G41880.1p  transcript_id AT5G41880.1  
At5g41890	chr5:016766844	0.0	C/16766844-16766900,16766428-16766605,16765586-16765716,16765212-16765454,16764621-16764888,16764292-16764524	AT5G41890.1  CDS  gene_syn K16L22.18, K16L22_18  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_component cellular_component|GO:0005575||ND  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT3G50400.1); Has 1787 Blast hits to 1768 proteins in 142 species: Archae - 0; Bacteria - 213; Metazoa - 1; Fungi - 15; Plants - 1542; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT5G41890.1p  transcript_id AT5G41890.1  protein_id AT5G41890.1p  transcript_id AT5G41890.1  
At5g41900	chr5:016769032	0.0	W/16769032-16769584,16769957-16770291,16770389-16770588,16771240-16771567	AT5G41900.1  CDS  gene_syn K16L22.19, K16L22_19  go_component endomembrane system|GO:0012505||IEA  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: BDG1 (BODYGUARD1); hydrolase (TAIR:AT1G64670.1); Has 5821 Blast hits to 5819 proteins in 866 species: Archae - 24; Bacteria - 3217; Metazoa - 260; Fungi - 191; Plants - 159; Viruses - 6; Other Eukaryotes - 1964 (source: NCBI BLink).  protein_id AT5G41900.1p  transcript_id AT5G41900.1  protein_id AT5G41900.1p  transcript_id AT5G41900.1  
At5g41905	chr5:016775524	0.0	C/16775524-16775658	AT5G41905.1  miRNA  gene_syn MICRORNA 166, MICRORNA 166E, MIR166, MIR166E  gene MIR166E  function Encodes a microRNA that targets several HD-ZIPIII family members including PHV, PHB, REV, ATHB-8, and ATHB-15. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCGGACCAGGCUUCAUUCCCC  go_process gene silencing by miRNA|GO:0035195|15851028|IDA  product MIR166E (MICRORNA 166E); miRNA  transcript_id AT5G41905.1  
At5g41908	chr5:016777283	0.0	W/16777283-16777438	AT5G41908.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G41908.1p  transcript_id AT5G41908.1  protein_id AT5G41908.1p  transcript_id AT5G41908.1  
At5g41910	chr5:016778821	0.0	C/16778821-16779032,16778668-16778748,16778484-16778589,16778321-16778410,16778160-16778231	AT5G41910.1  CDS  gene_syn MJC20.1, MJC20_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product RNA polymerase II mediator complex protein-related  note RNA polymerase II mediator complex protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26665.1); Has 212 Blast hits to 212 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 76; Plants - 22; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G41910.1p  transcript_id AT5G41910.1  protein_id AT5G41910.1p  transcript_id AT5G41910.1  
At5g41920	chr5:016779982	0.0	W/16779982-16781199	AT5G41920.1  CDS  gene_syn MJC20.2, MJC20_2  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product scarecrow transcription factor family protein  note scarecrow transcription factor family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: SCR (SCARECROW); protein binding / protein homodimerization/ sequence-specific DNA binding / transcription factor (TAIR:AT3G54220.1); Has 1396 Blast hits to 1369 proteins in 189 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1394; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G41920.1p  transcript_id AT5G41920.1  protein_id AT5G41920.1p  transcript_id AT5G41920.1  
At5g41940	chr5:016782039	0.0	W/16782039-16782256,16783319-16783454,16783545-16783594,16783989-16784042,16784260-16785451	AT5G41940.1  CDS  gene_syn MJC20.4, MJC20_4  go_component intracellular|GO:0005622||IEA  go_process regulation of Rab GTPase activity|GO:0032313||IEA  go_function RAB GTPase activator activity|GO:0005097||IEA  product RabGAP/TBC domain-containing protein  note RabGAP/TBC domain-containing protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: RAB GTPase activator (TAIR:AT3G49350.1); Has 3483 Blast hits to 2868 proteins in 186 species: Archae - 2; Bacteria - 83; Metazoa - 1894; Fungi - 490; Plants - 337; Viruses - 5; Other Eukaryotes - 672 (source: NCBI BLink).  protein_id AT5G41940.1p  transcript_id AT5G41940.1  protein_id AT5G41940.1p  transcript_id AT5G41940.1  
At5g41950	chr5:016785825	0.0	W/16785825-16786336,16786459-16786578,16786817-16786886,16787244-16787357,16787480-16787563,16787691-16787741,16787901-16787930,16788042-16788104,16788197-16788262,16788356-16788484,16788618-16788653,16788733-16788852,16788930-16789121,16789250-16789360	AT5G41950.1  CDS  gene_syn MJC20.5, MJC20_5  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990); Has 4082 Blast hits to 2807 proteins in 401 species: Archae - 36; Bacteria - 931; Metazoa - 1006; Fungi - 261; Plants - 81; Viruses - 23; Other Eukaryotes - 1744 (source: NCBI BLink).  protein_id AT5G41950.1p  transcript_id AT5G41950.1  protein_id AT5G41950.1p  transcript_id AT5G41950.1  
At5g41960	chr5:016789760	0.0	W/16789760-16789897,16789973-16790194,16790289-16790368,16790470-16790545,16790638-16790748,16790842-16790868	AT5G41960.1  CDS  gene_syn MJC20.6, MJC20_6  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 14 Blast hits to 14 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G41960.1p  transcript_id AT5G41960.1  protein_id AT5G41960.1p  transcript_id AT5G41960.1  
At5g41970	chr5:016791198	0.0	W/16791198-16791464,16791633-16791779,16791865-16791963,16792052-16792243,16792379-16792498,16792585-16792656,16792737-16792961	AT5G41970.1  CDS  gene_syn MJC20.7, MJC20_7  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metal-dependent protein hydrolase (InterPro:IPR003226); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49320.1); Has 464 Blast hits to 461 proteins in 209 species: Archae - 0; Bacteria - 122; Metazoa - 131; Fungi - 87; Plants - 29; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT5G41970.1p  transcript_id AT5G41970.1  protein_id AT5G41970.1p  transcript_id AT5G41970.1  
At5g41980	chr5:016793765	0.0	W/16793765-16794889	AT5G41980.1  CDS  gene_syn MJC20.8, MJC20_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 801 Blast hits to 790 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 192; Fungi - 43; Plants - 565; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G41980.1p  transcript_id AT5G41980.1  protein_id AT5G41980.1p  transcript_id AT5G41980.1  
At5g41990	chr5:016797473	0.0	C/16797473-16797562,16797070-16797107,16796758-16796985,16796437-16796657,16796204-16796361,16795747-16796128,16795085-16795659	AT5G41990.1  CDS  gene_syn ATWNK8, MJC20.9, MJC20_9, WITH NO LYSINE (K) KINASE 8, WNK8  gene WNK8  function Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Interacts specifically with and phosphorylates AtVHA-C, subunit C of the vacuolar H+-ATPase.  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468|12506983|TAS  go_process protein amino acid phosphorylation|GO:0006468|16427632|IDA  go_process protein amino acid autophosphorylation|GO:0046777|16427632|IDA  go_process photoperiodism, flowering|GO:0048573|18761494|IMP  go_function protein kinase activity|GO:0004672|12506983|TAS  go_function protein kinase activity|GO:0004672|16427632|IDA  go_function kinase activity|GO:0016301||ISS  product WNK8 (WITH NO LYSINE (K) KINASE 8); kinase/ protein kinase  note WITH NO LYSINE (K) KINASE 8 (WNK8); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: photoperiodism, flowering, protein amino acid autophosphorylation, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: phloem, sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: WNK10 (WITH NO LYSINE KINASE 10); kinase/ transcription factor (TAIR:AT1G64630.1); Has 78789 Blast hits to 78007 proteins in 1941 species: Archae - 34; Bacteria - 6053; Metazoa - 33356; Fungi - 7060; Plants - 16989; Viruses - 387; Other Eukaryotes - 14910 (source: NCBI BLink).  protein_id AT5G41990.1p  transcript_id AT5G41990.1  protein_id AT5G41990.1p  transcript_id AT5G41990.1  
At5g41992	chr5:016797698	0.0	C/16797698-16797907	AT5G41992.1  CDS  gene_syn CPuORF58, Conserved peptide upstream open reading frame 58  gene CPuORF58  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF58 represents a conserved upstream opening reading frame relative to major ORF AT5G41990.1  product CPuORF58 (Conserved peptide upstream open reading frame 58)  note Conserved peptide upstream open reading frame 58 (CPuORF58); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G41992.1p  transcript_id AT5G41992.1  protein_id AT5G41992.1p  transcript_id AT5G41992.1  
At5g42000	chr5:016799455	0.0	W/16799455-16799631,16799713-16799861,16800543-16800681	AT5G42000.1  CDS  gene_syn MJC20.10, MJC20_10  go_component integral to membrane|GO:0016021||IEA  go_component endoplasmic reticulum|GO:0005783||ISS  go_process protein folding|GO:0006457||ISS  go_function molecular_function|GO:0003674||ND  product ORMDL family protein  note ORMDL family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding; LOCATED IN: integral to membrane, endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ORMDL (InterPro:IPR007203); BEST Arabidopsis thaliana protein match is: ORMDL family protein (TAIR:AT1G01230.1); Has 398 Blast hits to 398 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 233; Fungi - 101; Plants - 52; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT5G42000.1p  transcript_id AT5G42000.1  protein_id AT5G42000.1p  transcript_id AT5G42000.1  
At5g42000	chr5:016799455	0.0	W/16799455-16799631,16799713-16799865	AT5G42000.2  CDS  gene_syn MJC20.10, MJC20_10  go_component integral to membrane|GO:0016021||IEA  go_component endoplasmic reticulum|GO:0005783||ISS  go_process protein folding|GO:0006457||ISS  go_function molecular_function|GO:0003674||ND  product ORMDL family protein  note ORMDL family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding; LOCATED IN: integral to membrane, endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ORMDL (InterPro:IPR007203); BEST Arabidopsis thaliana protein match is: ORMDL family protein (TAIR:AT1G01230.1).  protein_id AT5G42000.2p  transcript_id AT5G42000.2  protein_id AT5G42000.2p  transcript_id AT5G42000.2  
At5g42010	chr5:016802280	0.0	W/16802280-16803404,16803496-16803589,16803675-16803884,16803971-16804147,16804234-16804757	AT5G42010.1  CDS  gene_syn MJC20.11, MJC20_11  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_process signal transduction|GO:0007165||ISS  go_process response to salt stress|GO:0009651|11351099|IEP  go_function signal transducer activity|GO:0004871||ISS  product WD-40 repeat family protein  note WD-40 repeat family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: signal transduction, response to salt stress; LOCATED IN: heterotrimeric G-protein complex; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein (TAIR:AT1G64610.2); Has 22412 Blast hits to 14316 proteins in 476 species: Archae - 38; Bacteria - 3258; Metazoa - 9904; Fungi - 4318; Plants - 1922; Viruses - 0; Other Eukaryotes - 2972 (source: NCBI BLink).  protein_id AT5G42010.1p  transcript_id AT5G42010.1  protein_id AT5G42010.1p  transcript_id AT5G42010.1  
At5g42020	chr5:016810426	0.0	C/16810426-16810480,16809866-16810133,16809570-16809784,16809221-16809463,16808294-16809011,16807697-16808204	AT5G42020.1  CDS  gene_syn BIP, BIP2, MJC20.12, MJC20_12, luminal binding protein  gene BIP2  function luminal binding protein (BiP)  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleus|GO:0005634|14617066|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ATP binding|GO:0005524||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum|GO:0005783||TAS  go_component endoplasmic reticulum lumen|GO:0005788|11402207|TAS  go_process protein folding|GO:0006457|11402207|TAS  go_process protein folding|GO:0006457||ISS  go_process response to heat|GO:0009408|8888624|IDA  go_process response to endoplasmic reticulum stress|GO:0034976|18574595|IEP  product BIP2; ATP binding  note BIP2; FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to cadmium ion, response to heat, response to endoplasmic reticulum stress; LOCATED IN: in 8 components; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: BIP1; ATP binding (TAIR:AT5G28540.1); Has 26847 Blast hits to 26298 proteins in 3123 species: Archae - 108; Bacteria - 10287; Metazoa - 3379; Fungi - 1267; Plants - 721; Viruses - 270; Other Eukaryotes - 10815 (source: NCBI BLink).  protein_id AT5G42020.1p  transcript_id AT5G42020.1  protein_id AT5G42020.1p  transcript_id AT5G42020.1  
At5g42020	chr5:016810426	0.0	C/16810426-16810480,16809866-16810133,16809570-16809784,16809221-16809463,16808294-16809011,16808174-16808204,16807697-16808008	AT5G42020.2  CDS  gene_syn BIP, BIP2, MJC20.12, MJC20_12, luminal binding protein  gene BIP2  function luminal binding protein (BiP)  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleus|GO:0005634|14617066|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ATP binding|GO:0005524||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum|GO:0005783||TAS  go_component endoplasmic reticulum lumen|GO:0005788|11402207|TAS  go_process protein folding|GO:0006457|11402207|TAS  go_process protein folding|GO:0006457||ISS  go_process response to heat|GO:0009408|8888624|IDA  go_process response to endoplasmic reticulum stress|GO:0034976|18574595|IEP  product BIP2; ATP binding  note luminal binding protein (BIP); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to cadmium ion, response to heat, response to endoplasmic reticulum stress; LOCATED IN: in 8 components; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: BIP1; ATP binding (TAIR:AT5G28540.1); Has 25415 Blast hits to 25051 proteins in 3008 species: Archae - 103; Bacteria - 10057; Metazoa - 3045; Fungi - 1232; Plants - 733; Viruses - 270; Other Eukaryotes - 9975 (source: NCBI BLink).  protein_id AT5G42020.2p  transcript_id AT5G42020.2  protein_id AT5G42020.2p  transcript_id AT5G42020.2  
At5g42030	chr5:016812989	0.0	C/16812989-16813087,16812788-16812870,16812544-16812694,16812372-16812471,16812229-16812285,16812096-16812138,16811955-16812025,16811765-16811856,16811518-16811661	AT5G42030.1  CDS  gene_syn ABIL4, ABL INTERACTOR-LIKE PROTEIN 4, MJC20.13, MJC20_13  gene ABIL4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ABIL4 (ABL INTERACTOR-LIKE PROTEIN 4)  note ABL INTERACTOR-LIKE PROTEIN 4 (ABIL4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3) (TAIR:AT5G24310.1); Has 101 Blast hits to 101 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G42030.1p  transcript_id AT5G42030.1  protein_id AT5G42030.1p  transcript_id AT5G42030.1  
At5g42040	chr5:016814645	0.0	C/16814645-16814749,16814170-16814513,16813835-16814087	AT5G42040.1  CDS  gene_syn MJC20.14, MJC20_14, RPN12b, Regulatory Particle Non-ATPase 12b  gene RPN12b  go_component proteasome regulatory particle|GO:0005838||IEA  go_process proteolysis|GO:0006508||IEA  go_component proteasome regulatory particle|GO:0005838||ISS  go_process proteolysis|GO:0006508||ISS  go_function peptidase activity|GO:0008233||ISS  product RPN12b (Regulatory Particle Non-ATPase 12b); peptidase  note Regulatory Particle Non-ATPase 12b (RPN12b); FUNCTIONS IN: peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: proteasome regulatory particle; CONTAINS InterPro DOMAIN/s: 26S proteasome non-ATPase regulatory subunit Rpn12 (InterPro:IPR006746), SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro:IPR005062); BEST Arabidopsis thaliana protein match is: RPN12a (Regulatory Particle non-ATPase 12a); peptidase (TAIR:AT1G64520.1); Has 343 Blast hits to 343 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 160; Fungi - 83; Plants - 39; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT5G42040.1p  transcript_id AT5G42040.1  protein_id AT5G42040.1p  transcript_id AT5G42040.1  
At5g42050	chr5:016815630	0.0	W/16815630-16816341,16816422-16816606,16816696-16816806,16816891-16816932	AT5G42050.1  CDS  gene_syn MJC20.15, MJC20_15  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Development and cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27090.1); Has 5084 Blast hits to 2870 proteins in 85 species: Archae - 0; Bacteria - 24; Metazoa - 270; Fungi - 58; Plants - 157; Viruses - 8; Other Eukaryotes - 4567 (source: NCBI BLink).  protein_id AT5G42050.1p  transcript_id AT5G42050.1  protein_id AT5G42050.1p  transcript_id AT5G42050.1  
At5g42053	chr5:016817708	0.0	W/16817708-16817872	AT5G42053.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G42053.1p  transcript_id AT5G42053.1  protein_id AT5G42053.1p  transcript_id AT5G42053.1  
At5g42060	chr5:016818644	0.0	C/16818644-16818922	AT5G42060.1  CDS  gene_syn MJC20.17, MJC20_17  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64490.1); Has 37 Blast hits to 36 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G42060.1p  transcript_id AT5G42060.1  protein_id AT5G42060.1p  transcript_id AT5G42060.1  
At5g42070	chr5:016819914	0.0	C/16819914-16820119,16819325-16819570,16819118-16819160	AT5G42070.1  CDS  gene_syn MJC20.18, MJC20_18  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 23 Blast hits to 23 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G42070.1p  transcript_id AT5G42070.1  protein_id AT5G42070.1p  transcript_id AT5G42070.1  
At5g42080	chr5:016824408	0.0	C/16824408-16824536,16823977-16824040,16823773-16823880,16823584-16823685,16823449-16823499,16823262-16823323,16822998-16823088,16822838-16822902,16822446-16822640,16822074-16822193,16821935-16822005,16821564-16821795	AT5G42080.2  CDS  gene_syn ADL1, ADL1A, AG68, ARABIDOPSIS DYNAMIN-LIKE PROTEIN, DRP1A, DYNAMIN-RELATED PROTEIN 1A, MJC20.19, MJC20_19, RADIAL SWELLING 9, RSW9  gene ADL1  function Encodes a dynamin-like protein related to phragmoplastin. Mutations in this gene, in combination with mutation in ADL1E, result in defects in embryogenesis, cell plate formation and trichome branching. Also controls vascular patterning in combination with VAN3 and GNOM.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component microtubule|GO:0005874|15923323|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component cell plate|GO:0009504|12671086|IDA  go_component chloroplast thylakoid membrane|GO:0009535|9463364|IDA  go_process cytokinesis by cell plate formation|GO:0000911|12671086|IGI  go_process embryonic development ending in seed dormancy|GO:0009793|12671086|IGI  go_process cell plate formation involved in plant-type cell wall biogenesis|GO:0009920|12671086|IGI  go_process xylem and phloem pattern formation|GO:0010051|15923323|IMP  go_process trichome branching|GO:0010091|12671086|IMP  go_function GTPase activity|GO:0003924|15923323|IDA  go_function protein binding|GO:0005515|15923323|IPI  go_function GTP binding|GO:0005525||ISS  product ADL1 (ARABIDOPSIS DYNAMIN-LIKE PROTEIN); GTP binding / GTPase/ protein binding  note ARABIDOPSIS DYNAMIN-LIKE PROTEIN (ADL1); FUNCTIONS IN: protein binding, GTP binding, GTPase activity; INVOLVED IN: trichome branching, xylem and phloem pattern formation, embryonic development ending in seed dormancy, cell plate formation involved in plant-type cell wall biogenesis, cytokinesis by cell plate formation; LOCATED IN: chloroplast thylakoid membrane, microtubule, plasma membrane, vacuole, cell plate; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Dynamin, GTPase region (InterPro:IPR001401), Dynamin central region (InterPro:IPR000375); BEST Arabidopsis thaliana protein match is: ADL1B (ARABIDOPSIS DYNAMIN-LIKE 1B); GTP binding / GTPase (TAIR:AT3G61760.1); Has 2038 Blast hits to 2023 proteins in 245 species: Archae - 2; Bacteria - 37; Metazoa - 936; Fungi - 515; Plants - 279; Viruses - 0; Other Eukaryotes - 269 (source: NCBI BLink).  protein_id AT5G42080.2p  transcript_id AT5G42080.2  protein_id AT5G42080.2p  transcript_id AT5G42080.2  
At5g42080	chr5:016824408	0.0	C/16824408-16824536,16823977-16824040,16823773-16823880,16823584-16823685,16823449-16823499,16823262-16823323,16822998-16823088,16822838-16822902,16822446-16822640,16822074-16822193,16821935-16822005,16821570-16821795,16821415-16821465,16821088-16821316,16820875-16821014,16820661-16820789	AT5G42080.1  CDS  gene_syn ADL1, ADL1A, AG68, ARABIDOPSIS DYNAMIN-LIKE PROTEIN, DRP1A, DYNAMIN-RELATED PROTEIN 1A, MJC20.19, MJC20_19, RADIAL SWELLING 9, RSW9  gene ADL1  function Encodes a dynamin-like protein related to phragmoplastin. Mutations in this gene, in combination with mutation in ADL1E, result in defects in embryogenesis, cell plate formation and trichome branching. Also controls vascular patterning in combination with VAN3 and GNOM.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component microtubule|GO:0005874|15923323|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component cell plate|GO:0009504|12671086|IDA  go_component chloroplast thylakoid membrane|GO:0009535|9463364|IDA  go_process cytokinesis by cell plate formation|GO:0000911|12671086|IGI  go_process embryonic development ending in seed dormancy|GO:0009793|12671086|IGI  go_process cell plate formation involved in plant-type cell wall biogenesis|GO:0009920|12671086|IGI  go_process xylem and phloem pattern formation|GO:0010051|15923323|IMP  go_process trichome branching|GO:0010091|12671086|IMP  go_function GTPase activity|GO:0003924|15923323|IDA  go_function protein binding|GO:0005515|15923323|IPI  go_function GTP binding|GO:0005525||ISS  product ADL1 (ARABIDOPSIS DYNAMIN-LIKE PROTEIN); GTP binding / GTPase/ protein binding  note ARABIDOPSIS DYNAMIN-LIKE PROTEIN (ADL1); FUNCTIONS IN: protein binding, GTP binding, GTPase activity; INVOLVED IN: trichome branching, xylem and phloem pattern formation, embryonic development ending in seed dormancy, cell plate formation involved in plant-type cell wall biogenesis, cytokinesis by cell plate formation; LOCATED IN: chloroplast thylakoid membrane, microtubule, plasma membrane, vacuole, cell plate; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130), Dynamin, GTPase region (InterPro:IPR001401), Dynamin central region (InterPro:IPR000375); BEST Arabidopsis thaliana protein match is: ADL1B (ARABIDOPSIS DYNAMIN-LIKE 1B); GTP binding / GTPase (TAIR:AT3G61760.1); Has 2139 Blast hits to 2063 proteins in 250 species: Archae - 2; Bacteria - 56; Metazoa - 940; Fungi - 519; Plants - 325; Viruses - 0; Other Eukaryotes - 297 (source: NCBI BLink).  protein_id AT5G42080.1p  transcript_id AT5G42080.1  protein_id AT5G42080.1p  transcript_id AT5G42080.1  
At5g42090	chr5:016826830	0.0	W/16826830-16828149	AT5G42090.1  CDS  gene_syn MJC20.20, MJC20_20  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  product unknown protein  note LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09570.1); Has 303 Blast hits to 300 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 180; Fungi - 10; Plants - 90; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT5G42090.1p  transcript_id AT5G42090.1  protein_id AT5G42090.1p  transcript_id AT5G42090.1  
At5g42100	chr5:016829897	0.0	C/16829897-16831168	AT5G42100.2  CDS  gene_syn ATBG_PAP, ATBG_PPAP, MJC20.21, MJC20_21  gene ATBG_PAP  function encodes a plasmodesmal (Pd)-associated membrane protein involved in plasmodesmal callose degradation, i.e. beta-1,3-glucanase (EC 3.2.1.39), and functions in the gating of Pd  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_component endoplasmic reticulum|GO:0005783|17270015|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_component plasmodesma|GO:0009506|17270015|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process cell communication|GO:0007154|17270015|IMP  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function glucan endo-1,3-beta-D-glucosidase activity|GO:0042973|17270015|IMP  product ATBG_PAP; glucan endo-1,3-beta-D-glucosidase/ hydrolase, hydrolyzing O-glycosyl compounds  note ATBG_PAP; FUNCTIONS IN: glucan endo-1,3-beta-D-glucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: cell communication; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT1G32860.1); Has 1540 Blast hits to 1528 proteins in 165 species: Archae - 0; Bacteria - 57; Metazoa - 47; Fungi - 12; Plants - 1376; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT5G42100.2p  transcript_id AT5G42100.2  protein_id AT5G42100.2p  transcript_id AT5G42100.2  
At5g42100	chr5:016829960	0.0	C/16829960-16831168,16829460-16829528	AT5G42100.1  CDS  gene_syn ATBG_PAP, ATBG_PPAP, MJC20.21, MJC20_21  gene ATBG_PAP  function encodes a plasmodesmal (Pd)-associated membrane protein involved in plasmodesmal callose degradation, i.e. beta-1,3-glucanase (EC 3.2.1.39), and functions in the gating of Pd  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_component endoplasmic reticulum|GO:0005783|17270015|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_component plasmodesma|GO:0009506|17270015|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process cell communication|GO:0007154|17270015|IMP  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function glucan endo-1,3-beta-D-glucosidase activity|GO:0042973|17270015|IMP  product ATBG_PAP; glucan endo-1,3-beta-D-glucosidase/ hydrolase, hydrolyzing O-glycosyl compounds  note ATBG_PAP; FUNCTIONS IN: glucan endo-1,3-beta-D-glucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: cell communication; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT1G32860.1); Has 1615 Blast hits to 1596 proteins in 172 species: Archae - 2; Bacteria - 51; Metazoa - 101; Fungi - 18; Plants - 1376; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT5G42100.1p  transcript_id AT5G42100.1  protein_id AT5G42100.1p  transcript_id AT5G42100.1  
At5g42110	chr5:016832134	0.0	C/16832134-16832226,16831951-16832046	AT5G42110.1  CDS  gene_syn MJC20.22, MJC20_22  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G42110.1p  transcript_id AT5G42110.1  protein_id AT5G42110.1p  transcript_id AT5G42110.1  
At5g42120	chr5:016833073	0.0	C/16833073-16835148	AT5G42120.1  CDS  gene_syn MJC20.23, MJC20_23  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product lectin protein kinase family protein  note lectin protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin protein kinase, putative (TAIR:AT5G55830.1); Has 76631 Blast hits to 75569 proteins in 2662 species: Archae - 38; Bacteria - 6948; Metazoa - 33490; Fungi - 5627; Plants - 17994; Viruses - 343; Other Eukaryotes - 12191 (source: NCBI BLink).  protein_id AT5G42120.1p  transcript_id AT5G42120.1  protein_id AT5G42120.1p  transcript_id AT5G42120.1  
At5g42130	chr5:016835572	0.0	C/16835572-16836810	AT5G42130.1  CDS  gene_syn MJC20.24, MJC20_24  go_component chloroplast|GO:0009507|18431481|IDA  go_process transport|GO:0006810||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function binding|GO:0005488||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrial inner membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: SAMC1 (S-ADENOSYLMETHIONINE CARRIER 1); S-adenosylmethionine transmembrane transporter/ binding (TAIR:AT4G39460.1); Has 17455 Blast hits to 9853 proteins in 357 species: Archae - 0; Bacteria - 0; Metazoa - 8573; Fungi - 4742; Plants - 2529; Viruses - 0; Other Eukaryotes - 1611 (source: NCBI BLink).  protein_id AT5G42130.1p  transcript_id AT5G42130.1  protein_id AT5G42130.1p  transcript_id AT5G42130.1  
At5g42140	chr5:016841521	0.0	C/16841521-16841640,16841176-16841265,16840974-16841060,16840770-16840886,16838600-16840684,16838353-16838499,16837766-16838205,16837547-16837682	AT5G42140.1  CDS  gene_syn MJC20.25, MJC20_25  go_process signal transduction|GO:0007165|15358268|ISS  go_function chromatin binding|GO:0003682||ISS  go_function zinc ion binding|GO:0008270||ISS  go_function Ran GTPase binding|GO:0008536||ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product zinc finger protein, putative / regulator of chromosome condensation (RCC1) family protein  note zinc finger protein, putative / regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: chromatin binding, phosphoinositide binding, zinc ion binding, Ran GTPase binding; INVOLVED IN: signal transduction; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Zinc finger, FYVE-type (InterPro:IPR000306), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Zinc finger, FYVE-related (InterPro:IPR017455), Pleckstrin homology-type (InterPro:IPR011993), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: PRAF1; Ran GTPase binding / chromatin binding / zinc ion binding (TAIR:AT1G76950.1); Has 16862 Blast hits to 6456 proteins in 315 species: Archae - 38; Bacteria - 1318; Metazoa - 8172; Fungi - 719; Plants - 1471; Viruses - 3; Other Eukaryotes - 5141 (source: NCBI BLink).  protein_id AT5G42140.1p  transcript_id AT5G42140.1  protein_id AT5G42140.1p  transcript_id AT5G42140.1  
At5g42146	chr5:016844405	0.0	W/16844405-16844818	AT5G42146.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 43 Blast hits to 43 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G42146.1p  transcript_id AT5G42146.1  protein_id AT5G42146.1p  transcript_id AT5G42146.1  
At5g42150	chr5:016846247	0.0	W/16846247-16846556,16846787-16846921,16847016-16847094,16847189-16847283,16847502-16847669,16847749-16847909	AT5G42150.1  CDS  gene_syn MJC20.26, MJC20_26  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  product electron carrier/ protein disulfide oxidoreductase  note electron carrier/ protein disulfide oxidoreductase; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutaredoxin active site (InterPro:IPR011767), Thioredoxin-like fold (InterPro:IPR012336); Has 657 Blast hits to 657 proteins in 166 species: Archae - 6; Bacteria - 158; Metazoa - 209; Fungi - 11; Plants - 46; Viruses - 0; Other Eukaryotes - 227 (source: NCBI BLink).  protein_id AT5G42150.1p  transcript_id AT5G42150.1  protein_id AT5G42150.1p  transcript_id AT5G42150.1  
At5g42170	chr5:016848786	0.0	W/16848786-16848891,16849285-16849482,16850040-16850170,16850276-16850500,16850697-16850952,16851514-16851707	AT5G42170.1  CDS  gene_syn MJC20.28, MJC20_28  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product carboxylesterase/ hydrolase, acting on ester bonds  note carboxylesterase/ hydrolase, acting on ester bonds; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase, putative (TAIR:AT1G59406.1); Has 1957 Blast hits to 1940 proteins in 218 species: Archae - 0; Bacteria - 356; Metazoa - 1; Fungi - 15; Plants - 1567; Viruses - 2; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT5G42170.1p  transcript_id AT5G42170.1  protein_id AT5G42170.1p  transcript_id AT5G42170.1  
At5g42180	chr5:016852702	0.0	W/16852702-16852905,16853004-16853192,16853285-16853447,16853624-16854021	AT5G42180.1  CDS  gene_syn MJC20.29, MJC20_29  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase 64 (PER64) (P64) (PRXR4)  note peroxidase 64 (PER64) (P64) (PRXR4); FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: plant-type cell wall; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase (TAIR:AT5G51890.1); Has 2930 Blast hits to 2917 proteins in 223 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 98; Plants - 2786; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT5G42180.1p  transcript_id AT5G42180.1  protein_id AT5G42180.1p  transcript_id AT5G42180.1  
At5g42190	chr5:016855175	0.0	C/16855175-16855516,16854495-16854668	AT5G42190.1  CDS  gene_syn ARABIDOPSIS SKP1-LIKE 2, ASK2, Arabidopsis SKP-like 2, MJC20.30, MJC20_30, SKP1B  gene ASK2  function Similar to SKP1 in yeast and humans which are involved in mitotic cell cycle control and ubiquitin mediated proteolysis.  go_component cytoplasm|GO:0005737||NAS  go_component SCF ubiquitin ligase complex|GO:0019005||NAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|12970487|TAS  go_process embryonic development ending in seed dormancy|GO:0009793|14688296|IGI  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|10607296|IPI  go_function protein binding|GO:0005515|14749489|IPI  product ASK2 (ARABIDOPSIS SKP1-LIKE 2); protein binding / ubiquitin-protein ligase  note ARABIDOPSIS SKP1-LIKE 2 (ASK2); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: embryonic development ending in seed dormancy, ubiquitin-dependent protein catabolic process; LOCATED IN: SCF ubiquitin ligase complex, cytoplasm; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1); protein binding / ubiquitin-protein ligase (TAIR:AT1G75950.1); Has 1124 Blast hits to 1121 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 506; Fungi - 113; Plants - 361; Viruses - 11; Other Eukaryotes - 133 (source: NCBI BLink).  protein_id AT5G42190.1p  transcript_id AT5G42190.1  protein_id AT5G42190.1p  transcript_id AT5G42190.1  
At5g42200	chr5:016860523	0.0	W/16860523-16861014	AT5G42200.1  CDS  gene_syn MJC20.31, MJC20_31  go_function ubiquitin-protein ligase activity|GO:0004842|15644464|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G20823.1); Has 5356 Blast hits to 5337 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 1837; Fungi - 352; Plants - 2436; Viruses - 28; Other Eukaryotes - 703 (source: NCBI BLink).  protein_id AT5G42200.1p  transcript_id AT5G42200.1  protein_id AT5G42200.1p  transcript_id AT5G42200.1  
At5g42203	chr5:016863120	0.0	W/16863120-16863215	AT5G42203.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G42203.1p  transcript_id AT5G42203.1  protein_id AT5G42203.1p  transcript_id AT5G42203.1  
At5g42210	chr5:016867865	0.0	W/16867865-16867925,16868025-16868220,16868401-16868476,16868735-16868821,16868900-16868980,16869173-16869205,16869376-16869429,16869563-16869604,16869857-16869935,16870045-16870115,16870500-16870568	AT5G42210.1  CDS  gene_syn K5J14.1, K5J14_1  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: tetracycline transporter (TAIR:AT2G16990.2); Has 985 Blast hits to 984 proteins in 348 species: Archae - 2; Bacteria - 541; Metazoa - 251; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).  protein_id AT5G42210.1p  transcript_id AT5G42210.1  protein_id AT5G42210.1p  transcript_id AT5G42210.1  
At5g42220	chr5:016872962	0.0	W/16872962-16873090,16873185-16873302,16873607-16873705,16873798-16873913,16874008-16874094,16874270-16874464,16874552-16874621,16874694-16874848,16874980-16875144,16875222-16875293,16875365-16875482,16875560-16875802,16875876-16876024,16876108-16876299,16876421-16876951,16877176-16877313,16877393-16877455	AT5G42220.1  CDS  gene_syn K5J14.2, K5J14_2  go_process protein modification process|GO:0006464||IEA  product ubiquitin family protein  note ubiquitin family protein; INVOLVED IN: protein modification process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25270.1); Has 9149 Blast hits to 5042 proteins in 638 species: Archae - 2; Bacteria - 184; Metazoa - 4041; Fungi - 1003; Plants - 1687; Viruses - 163; Other Eukaryotes - 2069 (source: NCBI BLink).  protein_id AT5G42220.1p  transcript_id AT5G42220.1  protein_id AT5G42220.1p  transcript_id AT5G42220.1  
At5g42223	chr5:016878852	0.0	C/16878852-16878945,16878610-16878770	AT5G42223.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42232.1); Has 13 Blast hits to 13 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G42223.1p  transcript_id AT5G42223.1  protein_id AT5G42223.1p  transcript_id AT5G42223.1  
At5g42230	chr5:016881749	0.0	W/16881749-16881986,16882084-16882191,16882283-16882375,16882464-16882556,16882635-16882720,16882793-16883071,16883140-16883273,16883368-16883460,16883549-16883666,16883750-16883917	AT5G42230.1  CDS  gene_syn K5J14.3, K5J14_3, scpl41, serine carboxypeptidase-like 41  gene scpl41  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl41 (serine carboxypeptidase-like 41); serine-type carboxypeptidase  note serine carboxypeptidase-like 41 (scpl41); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl42 (serine carboxypeptidase-like 42); serine-type carboxypeptidase (TAIR:AT5G42240.1); Has 2452 Blast hits to 2408 proteins in 293 species: Archae - 0; Bacteria - 151; Metazoa - 567; Fungi - 565; Plants - 883; Viruses - 0; Other Eukaryotes - 286 (source: NCBI BLink).  protein_id AT5G42230.1p  transcript_id AT5G42230.1  protein_id AT5G42230.1p  transcript_id AT5G42230.1  
At5g42232	chr5:016884962	0.0	W/16884962-16885049,16885152-16885309	AT5G42232.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Expressed protein (TAIR:AT5G42235.1); Has 18 Blast hits to 18 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G42232.1p  transcript_id AT5G42232.1  protein_id AT5G42232.1p  transcript_id AT5G42232.1  
At5g42235	chr5:016886965	0.0	W/16886965-16887052,16887146-16887312	AT5G42235.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Expressed protein  note Expressed protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42232.1); Has 20 Blast hits to 20 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G42235.1p  transcript_id AT5G42235.1  protein_id AT5G42235.1p  transcript_id AT5G42235.1  
At5g42240	chr5:016888717	0.0	W/16888717-16888966,16889047-16889154,16889241-16889333,16889408-16889500,16889599-16889684,16889770-16890048,16890126-16890259,16890378-16890470,16890541-16890658,16890764-16890931	AT5G42240.1  CDS  gene_syn K5J14.4, K5J14_4, scpl42, serine carboxypeptidase-like 42  gene scpl42  go_component cell wall|GO:0005618|15593128|IDA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl42 (serine carboxypeptidase-like 42); serine-type carboxypeptidase  note serine carboxypeptidase-like 42 (scpl42); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl41 (serine carboxypeptidase-like 41); serine-type carboxypeptidase (TAIR:AT5G42230.1); Has 2511 Blast hits to 2467 proteins in 315 species: Archae - 0; Bacteria - 202; Metazoa - 566; Fungi - 565; Plants - 882; Viruses - 0; Other Eukaryotes - 296 (source: NCBI BLink).  protein_id AT5G42240.1p  transcript_id AT5G42240.1  protein_id AT5G42240.1p  transcript_id AT5G42240.1  
At5g42242	chr5:016891849	0.0	C/16891849-16891909,16891188-16891489	AT5G42242.1  CDS  gene_syn LCR57, Low-molecular-weight cysteine-rich 57  gene LCR57  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR57 (Low-molecular-weight cysteine-rich 57)  note Low-molecular-weight cysteine-rich 57 (LCR57); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: LCR58 (Low-molecular-weight cysteine-rich 58) (TAIR:AT5G38317.1); Has 32 Blast hits to 32 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G42242.1p  transcript_id AT5G42242.1  protein_id AT5G42242.1p  transcript_id AT5G42242.1  
At5g42250	chr5:016894087	0.0	W/16894087-16894147,16894244-16894380,16895213-16895259,16895885-16896213,16896296-16896378,16896638-16896713,16896829-16896893,16896965-16897060,16897172-16897450	AT5G42250.1  CDS  gene_syn K5J14.6, K5J14_6  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product alcohol dehydrogenase, putative  note alcohol dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: alcohol dehydrogenase, putative (TAIR:AT4G22110.2); Has 20689 Blast hits to 20681 proteins in 1945 species: Archae - 362; Bacteria - 11280; Metazoa - 1111; Fungi - 1579; Plants - 3020; Viruses - 3; Other Eukaryotes - 3334 (source: NCBI BLink).  protein_id AT5G42250.1p  transcript_id AT5G42250.1  protein_id AT5G42250.1p  transcript_id AT5G42250.1  
At5g42260	chr5:016898712	0.0	W/16898712-16900235	AT5G42260.1  CDS  gene_syn BETA GLUCOSIDASE 12, BGLU12, K5J14.7, K5J14_7  gene BGLU12  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU12 (BETA GLUCOSIDASE 12); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 12 (BGLU12); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU13 (BETA GLUCOSIDASE 13); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT5G44640.1); Has 5805 Blast hits to 5545 proteins in 798 species: Archae - 98; Bacteria - 3151; Metazoa - 608; Fungi - 134; Plants - 852; Viruses - 0; Other Eukaryotes - 962 (source: NCBI BLink).  protein_id AT5G42260.1p  transcript_id AT5G42260.1  protein_id AT5G42260.1p  transcript_id AT5G42260.1  
At5g42265	chr5:016901586	0.0	C/16901586-16901845	AT5G42265.1  pseudogenic_transcript  pseudo  function unknown pseudogene  
At5g42270	chr5:016902659	0.0	W/16902659-16903948,16904028-16904274,16904356-16904539,16904629-16904800,16904881-16905102	AT5G42270.1  CDS  gene_syn FTSH5, K5J14.13, K5J14_13, VAR1, VARIEGATED 1  gene VAR1  function VAR1 contains a conserved motif for ATPase and a metalloprotease characteristic to FtsH proteins, and is targeted into chloroplasts. A VAR1-fusion protein synthesized in vitro exhibited ATPase activity and partial metalloprotease activity. This protein is located to the thylakoid membrane and forms a complex with VAR2. FtsH1 (VAR1) and FtsH5 are interchangeable in thylakoid membranes.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast|GO:0009507|14630971|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14630971|IDA  go_process PSII associated light-harvesting complex II catabolic process|GO:0010304|16157880|TAS  go_function ATP-dependent peptidase activity|GO:0004176|11299370|ISS  go_function metallopeptidase activity|GO:0008237||ISS  go_function ATPase activity|GO:0016887|12167156|IDA  go_function ATPase activity|GO:0016887||ISS  product VAR1 (VARIEGATED 1); ATP-dependent peptidase/ ATPase/ metallopeptidase  note VARIEGATED 1 (VAR1); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: PSII associated light-harvesting complex II catabolic process; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH1 (FtsH protease 1); ATP-dependent peptidase/ ATPase/ metallopeptidase (TAIR:AT1G50250.1); Has 27433 Blast hits to 25771 proteins in 1861 species: Archae - 874; Bacteria - 8762; Metazoa - 4140; Fungi - 2408; Plants - 1764; Viruses - 22; Other Eukaryotes - 9463 (source: NCBI BLink).  protein_id AT5G42270.1p  transcript_id AT5G42270.1  protein_id AT5G42270.1p  transcript_id AT5G42270.1  
At5g42280	chr5:016907518	0.0	C/16907518-16908007,16907249-16907360,16905485-16906967	AT5G42280.1  CDS  gene_syn K5J14.8, K5J14_8  product DC1 domain-containing protein  note DC1 domain-containing protein; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT1G55380.1); Has 1315 Blast hits to 497 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 1110; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink).  protein_id AT5G42280.1p  transcript_id AT5G42280.1  protein_id AT5G42280.1p  transcript_id AT5G42280.1  
At5g42290	chr5:016911700	0.0	W/16911700-16912032	AT5G42290.1  CDS  gene_syn K5J14.9, K5J14_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product transcription activator-related  note transcription activator-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 18 Blast hits to 18 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G42290.1p  transcript_id AT5G42290.1  protein_id AT5G42290.1p  transcript_id AT5G42290.1  
At5g42300	chr5:016913611	0.0	C/16913611-16913832	AT5G42300.1  CDS  gene_syn K5J14.10, K5J14_10, UBIQUITIN-LIKE PROTEIN 5, UBL5  gene UBL5  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product UBL5 (UBIQUITIN-LIKE PROTEIN 5)  note UBIQUITIN-LIKE PROTEIN 5 (UBL5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: ubiquitin family protein (TAIR:AT3G45180.1); Has 300 Blast hits to 300 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 142; Fungi - 77; Plants - 44; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT5G42300.1p  transcript_id AT5G42300.1  protein_id AT5G42300.1p  transcript_id AT5G42300.1  
At5g42310	chr5:016915860	0.0	W/16915860-16917650,16917737-16917889,16917976-16918047,16918125-16918238	AT5G42310.1  CDS  gene_syn K5J14.11, K5J14_11  go_component chloroplast|GO:0009507|18431481|IDA  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G22470.1); Has 25250 Blast hits to 6205 proteins in 190 species: Archae - 6; Bacteria - 20; Metazoa - 1000; Fungi - 691; Plants - 22124; Viruses - 0; Other Eukaryotes - 1409 (source: NCBI BLink).  protein_id AT5G42310.1p  transcript_id AT5G42310.1  protein_id AT5G42310.1p  transcript_id AT5G42310.1  
At5g42320	chr5:016920798	0.0	C/16920798-16920845,16920614-16920724,16920315-16920452,16920155-16920224,16920016-16920071,16919795-16919920,16919449-16919588,16919207-16919279,16919047-16919121,16918651-16918953	AT5G42320.1  CDS  gene_syn K5J14.5, K5J14_5  go_component membrane|GO:0016020|17432890|IDA  go_process proteolysis|GO:0006508||IEA  go_function metallocarboxypeptidase activity|GO:0004181||IEA  go_function zinc ion binding|GO:0008270||IEA  product metallocarboxypeptidase/ zinc ion binding  note metallocarboxypeptidase/ zinc ion binding; FUNCTIONS IN: metallocarboxypeptidase activity, zinc ion binding; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M14, carboxypeptidase A (InterPro:IPR000834); Has 1362 Blast hits to 1361 proteins in 203 species: Archae - 4; Bacteria - 189; Metazoa - 902; Fungi - 91; Plants - 16; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).  protein_id AT5G42320.1p  transcript_id AT5G42320.1  protein_id AT5G42320.1p  transcript_id AT5G42320.1  
At5g42323	chr5:016923171	0.0	C/16923171-16923748	AT5G42323.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G06390; GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1); kinase  
At5g42325	chr5:016924370	0.0	C/16924370-16924851,16924102-16924321	AT5G42325.1  CDS  go_process transcription|GO:0006350||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product transcription elongation factor-related  note transcription elongation factor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TFIIS N-terminal (InterPro:IPR017923), Transcription elongation factor S-II, central region (InterPro:IPR003618); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G42730.1); Has 220 Blast hits to 200 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 22; Plants - 90; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT5G42325.1p  transcript_id AT5G42325.1  protein_id AT5G42325.1p  transcript_id AT5G42325.1  
At5g42330	chr5:016926672	0.0	W/16926672-16926774,16926856-16927370	AT5G42330.1  CDS  gene_syn MDH9.2, MDH9_2  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; Has 10 Blast hits to 10 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G42330.1p  transcript_id AT5G42330.1  protein_id AT5G42330.1p  transcript_id AT5G42330.1  
At5g42340	chr5:016929972	0.0	C/16929972-16930367,16929773-16929889,16929207-16929632,16928086-16929129	AT5G42340.1  CDS  gene_syn MDH9.3, MDH9_3  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  product binding / ubiquitin-protein ligase  note binding / ubiquitin-protein ligase; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: PUB13 (PLANT U-BOX 13); ubiquitin-protein ligase (TAIR:AT3G46510.1); Has 5217 Blast hits to 3549 proteins in 234 species: Archae - 0; Bacteria - 37; Metazoa - 2238; Fungi - 444; Plants - 1898; Viruses - 3; Other Eukaryotes - 597 (source: NCBI BLink).  protein_id AT5G42340.1p  transcript_id AT5G42340.1  protein_id AT5G42340.1p  transcript_id AT5G42340.1  
At5g42350	chr5:016932106	0.0	W/16932106-16933797	AT5G42350.1  CDS  gene_syn MDH9.4, MDH9_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915), Retro-transposon transporting, conserved site (InterPro:IPR018892); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT5G42360.1); Has 332 Blast hits to 325 proteins in 27 species: Archae - 0; Bacteria - 2; Metazoa - 21; Fungi - 0; Plants - 309; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G42350.1p  transcript_id AT5G42350.1  protein_id AT5G42350.1p  transcript_id AT5G42350.1  
At5g42360	chr5:016936305	0.0	C/16936305-16937996	AT5G42360.1  CDS  gene_syn MDH9.5, MDH9_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915), Retro-transposon transporting, conserved site (InterPro:IPR018892); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT5G42350.1); Has 329 Blast hits to 322 proteins in 27 species: Archae - 0; Bacteria - 2; Metazoa - 21; Fungi - 0; Plants - 306; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G42360.1p  transcript_id AT5G42360.1  protein_id AT5G42360.1p  transcript_id AT5G42360.1  
At5g42370	chr5:016941347	0.0	C/16941347-16941463,16940760-16941170,16940525-16940665,16940306-16940413,16939991-16940219,16939499-16939753,16939329-16939411	AT5G42370.1  CDS  gene_syn MDH9.6, MDH9_6  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 622 Blast hits to 617 proteins in 217 species: Archae - 0; Bacteria - 401; Metazoa - 4; Fungi - 44; Plants - 19; Viruses - 0; Other Eukaryotes - 154 (source: NCBI BLink).  protein_id AT5G42370.1p  transcript_id AT5G42370.1  protein_id AT5G42370.1p  transcript_id AT5G42370.1  
At5g42380	chr5:016942758	0.0	C/16942758-16943315	AT5G42380.1  CDS  gene_syn CALMODULIN LIKE 37, CALMODULIN LIKE 39, CML37, CML39, MDH9.7, MDH9_7  gene CML37  go_component chloroplast|GO:0009507||IEA  go_process response to ozone|GO:0010193|19054359|IEP  go_function calcium ion binding|GO:0005509|17579812|IDA  go_function calcium ion binding|GO:0005509||ISS  product CML37 (CALMODULIN LIKE 37); calcium ion binding  note CALMODULIN LIKE 37 (CML37); FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to ozone; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin-related protein, putative (TAIR:AT1G76640.1); Has 13184 Blast hits to 10239 proteins in 1127 species: Archae - 0; Bacteria - 39; Metazoa - 6469; Fungi - 2027; Plants - 2539; Viruses - 2; Other Eukaryotes - 2108 (source: NCBI BLink).  protein_id AT5G42380.1p  transcript_id AT5G42380.1  protein_id AT5G42380.1p  transcript_id AT5G42380.1  
At5g42390	chr5:016945308	0.0	W/16945308-16945507,16945628-16945832,16945919-16946163,16946333-16946531,16946850-16946897,16947039-16947146,16947257-16947445,16947532-16947831,16947948-16948049,16948387-16948521,16948705-16948929,16949137-16949340,16949431-16949598,16949864-16950013,16950107-16950244,16950422-16950649,16950737-16950889,16951002-16951128,16951333-16951459,16951772-16951892,16951981-16952061,16952150-16952251,16952330-16952480,16952556-16952647	AT5G42390.1  CDS  gene_syn MDH9.8, MDH9_8  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process proteolysis|GO:0006508||IEA  go_function catalytic activity|GO:0003824||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function metal ion binding|GO:0046872||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process proteolysis|GO:0006508||ISS  go_function metalloendopeptidase activity|GO:0004222||ISS  product metalloendopeptidase  note metalloendopeptidase; FUNCTIONS IN: metalloendopeptidase activity, zinc ion binding, catalytic activity, metal ion binding; INVOLVED IN: proteolysis; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M16, C-terminal (InterPro:IPR007863), Peptidase M16, N-terminal (InterPro:IPR011765), Metalloenzyme, LuxS/M16 peptidase-like, metal-binding (InterPro:IPR011249), Peptidase M16, core (InterPro:IPR011237); BEST Arabidopsis thaliana protein match is: peptidase M16 family protein / insulinase family protein (TAIR:AT5G56730.1); Has 6181 Blast hits to 5988 proteins in 1271 species: Archae - 12; Bacteria - 4040; Metazoa - 465; Fungi - 284; Plants - 136; Viruses - 3; Other Eukaryotes - 1241 (source: NCBI BLink).  protein_id AT5G42390.1p  transcript_id AT5G42390.1  protein_id AT5G42390.1p  transcript_id AT5G42390.1  
At5g42400	chr5:016960502	0.0	C/16960502-16960671,16959808-16960414,16959590-16959706,16959025-16959315,16958586-16958936,16958223-16958480,16957338-16958067,16957120-16957257,16956867-16957025,16956372-16956746,16956091-16956270,16955577-16955986,16955361-16955483,16955106-16955186,16954962-16955015,16954730-16954881,16954469-16954544	AT5G42400.1  CDS  gene_syn ATXR7, MDH9.9, MDH9_9, SDG25, SET DOMAIN PROTEIN 25  gene SDG25  product SDG25 (SET DOMAIN PROTEIN 25)  note SET DOMAIN PROTEIN 25 (SDG25); EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), GYF (InterPro:IPR003169); BEST Arabidopsis thaliana protein match is: ATX1 (ARABIDOPSIS HOMOLOGUE OF TRITHORAX); histone-lysine N-methyltransferase/ phosphatidylinositol-5-phosphate binding (TAIR:AT2G31650.1); Has 4578 Blast hits to 4436 proteins in 367 species: Archae - 2; Bacteria - 331; Metazoa - 2071; Fungi - 342; Plants - 549; Viruses - 2; Other Eukaryotes - 1281 (source: NCBI BLink).  protein_id AT5G42400.1p  transcript_id AT5G42400.1  protein_id AT5G42400.1p  transcript_id AT5G42400.1  
At5g42405	chr5:016962851	0.0	W/16962851-16962976	AT5G42405.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G42405.1p  transcript_id AT5G42405.1  protein_id AT5G42405.1p  transcript_id AT5G42405.1  
At5g42410	chr5:016964764	0.0	W/16964764-16965099	AT5G42410.1  CDS  gene_syn MDH9.10, MDH9_10  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT1G43040.1); Has 297 Blast hits to 297 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G42410.1p  transcript_id AT5G42410.1  protein_id AT5G42410.1p  transcript_id AT5G42410.1  
At5g42420	chr5:016968819	0.0	W/16968819-16968957,16969044-16969228,16969340-16969540,16969628-16969789,16969860-16970225	AT5G42420.1  CDS  gene_syn MDH9.11, MDH9_11  go_component membrane|GO:0016020|11152613|ISS  product transporter-related  note transporter-related; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: transporter-related (TAIR:AT1G21070.1); Has 1279 Blast hits to 1274 proteins in 161 species: Archae - 0; Bacteria - 4; Metazoa - 329; Fungi - 184; Plants - 597; Viruses - 0; Other Eukaryotes - 165 (source: NCBI BLink).  protein_id AT5G42420.1p  transcript_id AT5G42420.1  protein_id AT5G42420.1p  transcript_id AT5G42420.1  
At5g42420	chr5:016968819	0.0	W/16968819-16968957,16969044-16969228,16969628-16969789,16969860-16970225	AT5G42420.2  CDS  gene_syn MDH9.11, MDH9_11  go_component membrane|GO:0016020|11152613|ISS  product transporter-related  note transporter-related; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: transporter-related (TAIR:AT1G21070.1); Has 609 Blast hits to 566 proteins in 87 species: Archae - 0; Bacteria - 2; Metazoa - 94; Fungi - 60; Plants - 357; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT5G42420.2p  transcript_id AT5G42420.2  protein_id AT5G42420.2p  transcript_id AT5G42420.2  
At5g42430	chr5:016971312	0.0	C/16971312-16972499	AT5G42430.1  CDS  gene_syn MDH9.12, MDH9_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G30920.1); Has 784 Blast hits to 754 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 784; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G42430.1p  transcript_id AT5G42430.1  protein_id AT5G42430.1p  transcript_id AT5G42430.1  
At5g42440	chr5:016973434	0.0	C/16973434-16974513	AT5G42440.1  CDS  gene_syn MDH9.13, MDH9_13  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: PSKR1 (PHYTOSULFOKIN RECEPTOR 1); ATP binding / peptide receptor/ protein serine/threonine kinase (TAIR:AT2G02220.1); Has 83916 Blast hits to 83010 proteins in 3296 species: Archae - 49; Bacteria - 7841; Metazoa - 36878; Fungi - 6525; Plants - 17855; Viruses - 370; Other Eukaryotes - 14398 (source: NCBI BLink).  protein_id AT5G42440.1p  transcript_id AT5G42440.1  protein_id AT5G42440.1p  transcript_id AT5G42440.1  
At5g42445	chr5:016976272	0.0	W/16976272-16976613	AT5G42445.1  pseudogenic_transcript  pseudo  note 60S ribosomal protein L3 (RPL3C), pseudogene, temporary automated functional assignment; blastp match of 61% identity and 1.3e-25 P-value to SP|P35684|RL3_ORYSA 60S ribosomal protein L3. (Rice) {Oryza sativa}  
At5g42450	chr5:016977660	0.0	W/16977660-16978850	AT5G42450.1  CDS  gene_syn MDH9.15, MDH9_15  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G13600.1); Has 11209 Blast hits to 4268 proteins in 107 species: Archae - 10; Bacteria - 8; Metazoa - 15; Fungi - 4; Plants - 11065; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT5G42450.1p  transcript_id AT5G42450.1  protein_id AT5G42450.1p  transcript_id AT5G42450.1  
At5g42460	chr5:016979773	0.0	W/16979773-16980939	AT5G42460.1  CDS  gene_syn MDH9.16, MDH9_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G17830.1); Has 799 Blast hits to 768 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 797; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G42460.1p  transcript_id AT5G42460.1  protein_id AT5G42460.1p  transcript_id AT5G42460.1  
At5g42470	chr5:016982365	0.0	W/16982365-16982442,16982552-16982642,16982721-16982916,16983005-16983095,16983312-16983347,16983442-16983543,16983631-16983761,16983850-16983898,16983962-16984051,16984134-16984187,16984334-16984399,16984493-16984590,16984672-16984738	AT5G42470.1  CDS  gene_syn MDH9.17, MDH9_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Brain and reproductive organ-expressed (InterPro:IPR010358); Has 125 Blast hits to 120 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 108; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G42470.1p  transcript_id AT5G42470.1  protein_id AT5G42470.1p  transcript_id AT5G42470.1  
At5g42480	chr5:016985295	0.0	W/16985295-16985801,16985884-16986108,16986196-16986456,16986540-16987527,16987817-16987950,16988042-16988332	AT5G42480.1  CDS  gene_syn ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, ARC6, MDH9.18, MDH9_18  gene ARC6  function Shows homology to the cyanobacterial cell division protein Ftn2, mutant only has two mesophyll cell chloroplasts. Protein was localized to a ring at the center of the chloroplasts. Probably involved in functions in the assembly and/or stabilization of the plastid-dividing FtsZ ring, inhibiting FtsZ filament formation in the chloroplast.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast inner membrane|GO:0009706|12897262|IDA  go_process protein folding|GO:0006457||ISS  go_process chloroplast organization|GO:0009658|12232400|IMP  go_process chloroplast fission|GO:0010020|12897262|IMP  go_function protein binding|GO:0005515|15928083|IPI  go_function protein binding|GO:0005515|16146521|IPI  product ARC6 (ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6); protein binding  note ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6 (ARC6); FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, chloroplast fission, chloroplast organization; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: ARC6H (TAIR:AT3G19180.2); Has 315 Blast hits to 289 proteins in 62 species: Archae - 0; Bacteria - 126; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).  protein_id AT5G42480.1p  transcript_id AT5G42480.1  protein_id AT5G42480.1p  transcript_id AT5G42480.1  
At5g42490	chr5:016992448	0.0	C/16992448-16992622,16992275-16992364,16992092-16992192,16991896-16992009,16991736-16991817,16991595-16991662,16991448-16991510,16989406-16991349,16989046-16989326,16988609-16988954	AT5G42490.1  CDS  gene_syn MDH9.19, MDH9_19  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product kinesin motor family protein  note kinesin motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin motor family protein (TAIR:AT3G51150.1); Has 18394 Blast hits to 14623 proteins in 639 species: Archae - 30; Bacteria - 1019; Metazoa - 7479; Fungi - 1815; Plants - 1160; Viruses - 104; Other Eukaryotes - 6787 (source: NCBI BLink).  protein_id AT5G42490.1p  transcript_id AT5G42490.1  protein_id AT5G42490.1p  transcript_id AT5G42490.1  
At5g42500	chr5:016994359	0.0	C/16994359-16994916	AT5G42500.1  CDS  gene_syn MDH9.20, MDH9_20  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_function molecular_function|GO:0003674||ND  product disease resistance-responsive family protein  note disease resistance-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: disease resistance-responsive family protein (TAIR:AT5G42510.1); Has 554 Blast hits to 553 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 554; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G42500.1p  transcript_id AT5G42500.1  protein_id AT5G42500.1p  transcript_id AT5G42500.1  
At5g42504	chr5:016996900	0.0	W/16996900-16997127	AT5G42504.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G42504.1p  transcript_id AT5G42504.1  protein_id AT5G42504.1p  transcript_id AT5G42504.1  
At5g42505	chr5:016997168	0.0	W/16997168-16997754	AT5G42505.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.1e-23 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element)  
At5g42510	chr5:016998268	0.0	C/16998268-16998816	AT5G42510.1  CDS  gene_syn MDH9.21, MDH9_21  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_function molecular_function|GO:0003674||ND  product disease resistance-responsive family protein  note disease resistance-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: disease resistance-responsive family protein (TAIR:AT5G42500.1); Has 538 Blast hits to 537 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 538; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G42510.1p  transcript_id AT5G42510.1  protein_id AT5G42510.1p  transcript_id AT5G42510.1  
At5g42520	chr5:017001287	0.0	W/17001287-17001343,17001495-17002466	AT5G42520.1  CDS  gene_syn ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, ATBPC6, BASIC PENTACYSTEINE 6, BBR/BPC6, BPC6, MDH9.22, MDH9_22  gene BPC6  go_component nucleus|GO:0005634|14731261|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|14731261|IPI  go_function DNA binding|GO:0003677|14731261|IPI  go_function transcription factor activity|GO:0003700|14731261|IPI  product ATBPC6; DNA binding / transcription factor  note ATBPC6; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: BPC4 (BASIC PENTACYSTEINE 4); DNA binding / transcription factor (TAIR:AT2G21240.2); Has 191 Blast hits to 159 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 45; Fungi - 0; Plants - 127; Viruses - 3; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT5G42520.1p  transcript_id AT5G42520.1  protein_id AT5G42520.1p  transcript_id AT5G42520.1  
At5g42520	chr5:017001287	0.0	W/17001287-17001343,17001507-17002466	AT5G42520.2  CDS  gene_syn ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, ATBPC6, BASIC PENTACYSTEINE 6, BBR/BPC6, BPC6, MDH9.22, MDH9_22  gene BPC6  go_component nucleus|GO:0005634|14731261|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|14731261|IPI  go_function DNA binding|GO:0003677|14731261|IPI  go_function transcription factor activity|GO:0003700|14731261|IPI  product ATBPC6; DNA binding / transcription factor  note ATBPC6; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: BPC4 (BASIC PENTACYSTEINE 4); DNA binding / transcription factor (TAIR:AT2G21240.2); Has 182 Blast hits to 160 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 41; Fungi - 0; Plants - 127; Viruses - 3; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT5G42520.2p  transcript_id AT5G42520.2  protein_id AT5G42520.2p  transcript_id AT5G42520.2  
At5g42520	chr5:017001618	0.0	W/17001618-17002466	AT5G42520.3  CDS  gene_syn ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, ATBPC6, BASIC PENTACYSTEINE 6, BBR/BPC6, BPC6, MDH9.22, MDH9_22  gene BPC6  go_component nucleus|GO:0005634|14731261|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|14731261|IPI  go_function DNA binding|GO:0003677|14731261|IPI  go_function transcription factor activity|GO:0003700|14731261|IPI  product ATBPC6; DNA binding / transcription factor  note ATBPC6; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: BPC4 (BASIC PENTACYSTEINE 4); DNA binding / transcription factor (TAIR:AT2G21240.2); Has 137 Blast hits to 137 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 125; Viruses - 3; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G42520.3p  transcript_id AT5G42520.3  protein_id AT5G42520.3p  transcript_id AT5G42520.3  
At5g42530	chr5:017005233	0.0	C/17005233-17005338,17004948-17005057	AT5G42530.1  CDS  gene_syn MDH9.23, MDH9_23  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 12 Blast hits to 12 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G42530.1p  transcript_id AT5G42530.1  protein_id AT5G42530.1p  transcript_id AT5G42530.1  
At5g42540	chr5:017007513	0.0	W/17007513-17007825,17007925-17008001,17008468-17008659,17008743-17008862,17008986-17009048,17009280-17009429,17009540-17009698,17010089-17010166,17010250-17010336,17010953-17011183,17011372-17011467,17011602-17011697,17011793-17011863,17012330-17012458,17012536-17012612,17012693-17012733,17012842-17012916,17013007-17013164,17013335-17013439,17013565-17013646,17013800-17013894,17013991-17014534	AT5G42540.1  CDS  gene_syn EXORIBONUCLEASE 2, K16E1.2, K16E1_2, XRN2  gene XRN2  function Encodes a protein with similarity to yeast 5 -3 exonucleases and can functionally complement the yeast mutations. In Arabidopsis XRN2 acts as a suppressor of posttranscriptional gene silencing.  go_component nucleus|GO:0005634|11106401|IDA  go_process miRNA catabolic process|GO:0010587|17993620|IMP  go_function nucleic acid binding|GO:0003676||ISS  go_function 5 -3  exoribonuclease activity|GO:0004534|11106401|IGI  go_function 5 -3  exonuclease activity|GO:0008409||ISS  product XRN2 (EXORIBONUCLEASE 2); 5 -3  exonuclease/ 5 -3  exoribonuclease/ nucleic acid binding  note EXORIBONUCLEASE 2 (XRN2); FUNCTIONS IN: 5 -3  exoribonuclease activity, 5 -3  exonuclease activity, nucleic acid binding; INVOLVED IN: miRNA catabolic process; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 5&apos;-3&apos; exoribonuclease 2 (InterPro:IPR017151), Zinc finger, CCHC-type (InterPro:IPR001878), Putative 5-3 exonuclease (InterPro:IPR004859); BEST Arabidopsis thaliana protein match is: XRN3; 5 -3  exoribonuclease (TAIR:AT1G75660.1); Has 1935 Blast hits to 1371 proteins in 189 species: Archae - 0; Bacteria - 25; Metazoa - 471; Fungi - 248; Plants - 247; Viruses - 13; Other Eukaryotes - 931 (source: NCBI BLink).  protein_id AT5G42540.1p  transcript_id AT5G42540.1  protein_id AT5G42540.1p  transcript_id AT5G42540.1  
At5g42560	chr5:017015573	0.0	W/17015573-17015604,17015702-17015800,17015903-17015959,17016053-17016116,17016195-17016404,17016541-17016969	AT5G42560.1  CDS  gene_syn K16E1.3, K16E1_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product abscisic acid-responsive HVA22 family protein  note abscisic acid-responsive HVA22 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: TB2/DP1 and HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: HVA22H (HVA22-LIKE PROTEIN H (ATHVA22H)) (TAIR:AT1G19950.1); Has 1590 Blast hits to 1549 proteins in 202 species: Archae - 0; Bacteria - 91; Metazoa - 787; Fungi - 222; Plants - 335; Viruses - 6; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT5G42560.1p  transcript_id AT5G42560.1  protein_id AT5G42560.1p  transcript_id AT5G42560.1  
At5g42560	chr5:017015703	0.0	W/17015703-17015800,17015903-17015959,17016053-17016116,17016195-17016404,17016541-17016969	AT5G42560.2  CDS  gene_syn K16E1.3, K16E1_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product abscisic acid-responsive HVA22 family protein  note abscisic acid-responsive HVA22 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: TB2/DP1 and HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: HVA22H (HVA22-LIKE PROTEIN H (ATHVA22H)) (TAIR:AT1G19950.1); Has 1580 Blast hits to 1537 proteins in 201 species: Archae - 0; Bacteria - 89; Metazoa - 777; Fungi - 224; Plants - 335; Viruses - 6; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT5G42560.2p  transcript_id AT5G42560.2  protein_id AT5G42560.2p  transcript_id AT5G42560.2  
At5g42560	chr5:017015703	0.0	W/17015703-17015800,17015903-17015959,17016053-17016116,17016195-17016404,17016541-17016969	AT5G42560.3  CDS  gene_syn K16E1.3, K16E1_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product abscisic acid-responsive HVA22 family protein  note abscisic acid-responsive HVA22 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: TB2/DP1 and HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: HVA22H (HVA22-LIKE PROTEIN H (ATHVA22H)) (TAIR:AT1G19950.1); Has 1580 Blast hits to 1537 proteins in 201 species: Archae - 0; Bacteria - 89; Metazoa - 777; Fungi - 224; Plants - 335; Viruses - 6; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT5G42560.3p  transcript_id AT5G42560.3  protein_id AT5G42560.3p  transcript_id AT5G42560.3  
At5g42567	chr5:017018059	0.0	C/17018059-17018406	AT5G42567.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G34887.1); Has 43 Blast hits to 43 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G42567.1p  transcript_id AT5G42567.1  protein_id AT5G42567.1p  transcript_id AT5G42567.1  
At5g42565	chr5:017020007	0.0	C/17020007-17020354	AT5G42565.1  pseudogenic_transcript  pseudo  function Encodes a ECA1 gametogenesis related family protein [pseudogene]  note pseudogene, hypothetical protein  
At5g42568	chr5:017020874	0.0	W/17020874-17021056	AT5G42568.1  pseudogenic_transcript  pseudo  function Pseudogene of AT1G47830; clathrin coat assembly protein, putative  
At5g42570	chr5:017022215	0.0	C/17022215-17022497,17021459-17021832	AT5G42570.1  CDS  gene_syn K16E1.4, K16E1_4  go_component plasma membrane|GO:0005886|17151019|IDA  go_process intracellular protein transport|GO:0006886||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: B-cell receptor-associated 31-like (InterPro:IPR008417); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11905.1); Has 311 Blast hits to 268 proteins in 81 species: Archae - 2; Bacteria - 2; Metazoa - 134; Fungi - 41; Plants - 73; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT5G42570.1p  transcript_id AT5G42570.1  protein_id AT5G42570.1p  transcript_id AT5G42570.1  
At5g42580	chr5:017024357	0.0	C/17024357-17025229,17023646-17024272	AT5G42580.1  CDS  gene_syn CYP705A12, CYTOCHROME P450, FAMILY 705, SUBFAMILY A, POLYPEPTIDE 12, K16E1.5, K16E1_5  gene CYP705A12  function a member of the cytochrome P450 family  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP705A12; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP705A12; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP705A19; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G20100.1); Has 23315 Blast hits to 23169 proteins in 1255 species: Archae - 21; Bacteria - 2240; Metazoa - 10201; Fungi - 4352; Plants - 5574; Viruses - 3; Other Eukaryotes - 924 (source: NCBI BLink).  protein_id AT5G42580.1p  transcript_id AT5G42580.1  protein_id AT5G42580.1p  transcript_id AT5G42580.1  
At5g42590	chr5:017033257	0.0	C/17033257-17033640,17032002-17032499,17031632-17031913,17031217-17031546	AT5G42590.1  CDS  gene_syn CYP71A16, CYTOCHROME P450, FAMILY 71, SUBFAMILY A, POLYPEPTIDE 16, K16E1.6, K16E1_6  gene CYP71A16  function putative cytochrome P450  go_component chloroplast|GO:0009507|18431481|IDA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71A16; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71A16; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: chloroplast; EXPRESSED IN: root, cultured cell; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP71A14; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT5G24960.1); Has 23617 Blast hits to 23481 proteins in 1239 species: Archae - 30; Bacteria - 2347; Metazoa - 10174; Fungi - 4379; Plants - 5748; Viruses - 3; Other Eukaryotes - 936 (source: NCBI BLink).  protein_id AT5G42590.1p  transcript_id AT5G42590.1  protein_id AT5G42590.1p  transcript_id AT5G42590.1  
At5g42591	chr5:017036673	0.0	W/17036673-17036780	AT5G42591.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G42591.1p  transcript_id AT5G42591.1  protein_id AT5G42591.1p  transcript_id AT5G42591.1  
At5g42600	chr5:017053566	0.0	W/17053566-17053769,17053894-17054079,17054198-17054287,17054635-17054835,17054943-17055027,17055133-17055299,17055388-17055579,17055894-17056007,17056387-17056629,17056725-17056823,17056933-17056989,17057141-17057187,17057276-17057762,17057862-17057975	AT5G42600.1  CDS  gene_syn MARNERAL SYNTHASE, MFO20.1, MFO20_1, MRN1  gene MRN1  function Encodes an oxidosqualene synthase that produces the monocyclic triterpene marneral.  go_process triterpenoid biosynthetic process|GO:0016104|16425307|IDA  go_process pentacyclic triterpenoid biosynthetic process|GO:0019745||ISS  go_function catalytic activity|GO:0003824||ISS  go_function marneral synthase activity|GO:0034074|16425307|IDA  product MRN1 (MARNERAL SYNTHASE); catalytic/ marneral synthase  note MARNERAL SYNTHASE (MRN1); FUNCTIONS IN: marneral synthase activity, catalytic activity; INVOLVED IN: pentacyclic triterpenoid biosynthetic process, triterpenoid biosynthetic process; EXPRESSED IN: root; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Terpene synthase, conserved site (InterPro:IPR002365), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Squalene cyclase (InterPro:IPR018333), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: pentacyclic triterpene synthase, putative (TAIR:AT1G78500.1); Has 1406 Blast hits to 1304 proteins in 365 species: Archae - 0; Bacteria - 590; Metazoa - 122; Fungi - 161; Plants - 335; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink).  protein_id AT5G42600.1p  transcript_id AT5G42600.1  protein_id AT5G42600.1p  transcript_id AT5G42600.1  
At5g42610	chr5:017062507	0.0	W/17062507-17062950,17063497-17063934	AT5G42610.1  CDS  gene_syn MFO20.2, MFO20_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF607 (InterPro:IPR006769); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23790.1); Has 265 Blast hits to 263 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 32; Plants - 71; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT5G42610.1p  transcript_id AT5G42610.1  protein_id AT5G42610.1p  transcript_id AT5G42610.1  
At5g42620	chr5:017066630	0.0	W/17066630-17066692,17067008-17067364,17067450-17067590,17067677-17067809,17067907-17068020,17068116-17068264,17068433-17068525,17068643-17069036,17069263-17069389,17069473-17069572,17069812-17069881,17069966-17070118,17070215-17070310,17070396-17070715,17070830-17071045	AT5G42620.1  CDS  gene_syn MFO20.3, MFO20_3  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process proteolysis|GO:0006508||IEA  go_process cell adhesion|GO:0007155||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_function zinc ion binding|GO:0008270||IEA  product metalloendopeptidase/ zinc ion binding  note metalloendopeptidase/ zinc ion binding; FUNCTIONS IN: metalloendopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis, cell adhesion; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EGF, extracellular (InterPro:IPR013111), EGF (InterPro:IPR006210), EGF-like, type 3 (InterPro:IPR000742), Peptidase M8, leishmanolysin (InterPro:IPR001577); Has 19180 Blast hits to 7843 proteins in 225 species: Archae - 4; Bacteria - 22; Metazoa - 16926; Fungi - 60; Plants - 79; Viruses - 8; Other Eukaryotes - 2081 (source: NCBI BLink).  protein_id AT5G42620.1p  transcript_id AT5G42620.1  protein_id AT5G42620.1p  transcript_id AT5G42620.1  
At5g42630	chr5:017075360	0.0	C/17075360-17075747,17075144-17075220,17074867-17074906,17074580-17074746	AT5G42630.2  CDS  gene_syn ABERRANT TESTA SHAPE, ATS, KAN4, KANADI 4, MFO20.5, MFO20_5  gene ATS  function Encodes a member of the KANADI family of putative transcription factors. Involved in integument formation during ovule development and expressed at the boundary between the inner and outer integuments. It is essential for directing laminar growth of the inner integument.Along with KAN1 and KAN2, KAN4 is involved in proper localization of PIN1 in early embryogenesis.  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process ovule development|GO:0048481|12244241|IMP  go_process integument development|GO:0080060|19054366|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product ATS (ABERRANT TESTA SHAPE); DNA binding / transcription factor  note ABERRANT TESTA SHAPE (ATS); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: integument development, ovule development, regulation of transcription; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KAN2 (KANADI 2); DNA binding / transcription factor (TAIR:AT1G32240.1); Has 870 Blast hits to 870 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 864; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G42630.2p  transcript_id AT5G42630.2  protein_id AT5G42630.2p  transcript_id AT5G42630.2  
At5g42630	chr5:017075360	0.0	C/17075360-17075747,17075144-17075220,17074867-17074906,17074626-17074746,17074219-17074303,17073997-17074116	AT5G42630.1  CDS  gene_syn ABERRANT TESTA SHAPE, ATS, KAN4, KANADI 4, MFO20.5, MFO20_5  gene ATS  function Encodes a member of the KANADI family of putative transcription factors. Involved in integument formation during ovule development and expressed at the boundary between the inner and outer integuments. It is essential for directing laminar growth of the inner integument.Along with KAN1 and KAN2, KAN4 is involved in proper localization of PIN1 in early embryogenesis.  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process ovule development|GO:0048481|12244241|IMP  go_process integument development|GO:0080060|19054366|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product ATS (ABERRANT TESTA SHAPE); DNA binding / transcription factor  note ABERRANT TESTA SHAPE (ATS); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: integument development, ovule development, regulation of transcription; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KAN (KANADI); transcription factor (TAIR:AT5G16560.1); Has 875 Blast hits to 875 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 867; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G42630.1p  transcript_id AT5G42630.1  protein_id AT5G42630.1p  transcript_id AT5G42630.1  
At5g42635	chr5:017076227	0.0	W/17076227-17076326,17076379-17076468,17076559-17076725	AT5G42635.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 29 Blast hits to 17 proteins in 8 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 6; Plants - 10; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G42635.1p  transcript_id AT5G42635.1  protein_id AT5G42635.1p  transcript_id AT5G42635.1  
At5g42640	chr5:017088695	0.0	W/17088695-17089597	AT5G42640.1  CDS  gene_syn MFO20.6, MFO20_6  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT2G15740.1); Has 18 Blast hits to 18 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G42640.1p  transcript_id AT5G42640.1  protein_id AT5G42640.1p  transcript_id AT5G42640.1  
At5g42645	chr5:017090938	0.0	C/17090938-17095801	AT5G42645.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.6e-234 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At5g42650	chr5:017097803	0.0	C/17097803-17099359	AT5G42650.1  CDS  gene_syn ALLENE OXIDE SYNTHASE, AOS, CYP74A, CYTOCHROME P450 74A, DDE2, DELAYED DEHISCENCE 2  gene AOS  function Encodes a member of the cytochrome p450 CYP74 gene family that functions as an allene oxide synthase. This enzyme catalyzes dehydration of the hydroperoxide to an unstable allene oxide in the JA biosynthetic pathway. It shows a dual catalytic activity, the major one being a 13-AOS but also expressing a 9-AOS activity.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component chloroplast|GO:0009507|8756596|ISS  go_component plastoglobule|GO:0010287|16461379|IDA  go_process defense response|GO:0006952|16255250|TAS  go_process response to wounding|GO:0009611|10420644|IMP  go_process response to wounding|GO:0009611|17675405|IEP  go_process response to fungus|GO:0009620|19220788|IEP  go_process jasmonic acid biosynthetic process|GO:0009695|12430030|TAS  go_process jasmonic acid biosynthetic process|GO:0009695|8756596|TAS  go_process jasmonic acid biosynthetic process|GO:0009695|9778849|IDA  go_process response to jasmonic acid stimulus|GO:0009753|10420644|IMP  go_process epoxygenase P450 pathway|GO:0019373|8378325|ISS  go_process oxylipin metabolic process|GO:0031407|16831431|IDA  go_function allene oxide synthase activity|GO:0009978|16831431|IDA  go_function allene oxide synthase activity|GO:0009978|9778849|IDA  go_function hydro-lyase activity|GO:0016836|8756596|IDA  go_function oxygen binding|GO:0019825|8378325|ISS  product AOS (ALLENE OXIDE SYNTHASE); allene oxide synthase/ hydro-lyase/ oxygen binding  note ALLENE OXIDE SYNTHASE (AOS); FUNCTIONS IN: hydro-lyase activity, allene oxide synthase activity, oxygen binding; INVOLVED IN: in 7 processes; LOCATED IN: in 7 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: HPL1 (HYDROPEROXIDE LYASE 1); electron carrier/ heme binding / iron ion binding / monooxygenase (TAIR:AT4G15440.1); Has 2204 Blast hits to 2204 proteins in 309 species: Archae - 8; Bacteria - 190; Metazoa - 1238; Fungi - 271; Plants - 425; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT5G42650.1p  transcript_id AT5G42650.1  protein_id AT5G42650.1p  transcript_id AT5G42650.1  
At5g42655	chr5:017102213	0.0	C/17102213-17102602	AT5G42655.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: disease resistance-responsive family protein (TAIR:AT5G42500.1); Has 121 Blast hits to 121 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G42655.1p  transcript_id AT5G42655.1  protein_id AT5G42655.1p  transcript_id AT5G42655.1  
At5g42660	chr5:017105446	0.0	C/17105446-17105785,17104559-17104764,17104279-17104455,17104005-17104160,17103385-17103661,17103062-17103297	AT5G42660.1  CDS  gene_syn MJB21.3, MJB21_3  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF616 (InterPro:IPR006852); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G02910.1); Has 208 Blast hits to 208 proteins in 27 species: Archae - 6; Bacteria - 28; Metazoa - 0; Fungi - 0; Plants - 106; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT5G42660.1p  transcript_id AT5G42660.1  protein_id AT5G42660.1p  transcript_id AT5G42660.1  
At5g42670	chr5:017108262	0.0	W/17108262-17108426,17108526-17108577,17108645-17108874,17109111-17109227,17109790-17109838,17109964-17110235	AT5G42670.1  CDS  gene_syn MJB21.4, MJB21_4  go_function RNA binding|GO:0003723||IEA  go_process biological_process|GO:0008150||ND  product agenet domain-containing protein  note agenet domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein (TAIR:AT5G52070.1); Has 62 Blast hits to 62 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G42670.1p  transcript_id AT5G42670.1  protein_id AT5G42670.1p  transcript_id AT5G42670.1  
At5g42677	chr5:017113637	0.0	W/17113637-17113905	AT5G42677.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G19630  
At5g42680	chr5:017114640	0.0	W/17114640-17115356	AT5G42680.1  CDS  gene_syn MJB21.5, MJB21_5  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF617, plant (InterPro:IPR006460); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G39610.1); Has 136 Blast hits to 135 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G42680.1p  transcript_id AT5G42680.1  protein_id AT5G42680.1p  transcript_id AT5G42680.1  
At5g42690	chr5:017118826	0.0	C/17118826-17118960,17118500-17118737,17118308-17118423,17117906-17118222,17117707-17117806,17117568-17117624,17117391-17117474,17117179-17117295,17116630-17116932	AT5G42690.3  CDS  gene_syn MJB21.6, MJB21_6  product unknown protein  note unknown protein; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37080.2); Has 516 Blast hits to 508 proteins in 113 species: Archae - 0; Bacteria - 167; Metazoa - 32; Fungi - 0; Plants - 258; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT5G42690.3p  transcript_id AT5G42690.3  protein_id AT5G42690.3p  transcript_id AT5G42690.3  
At5g42690	chr5:017119403	0.0	C/17119403-17119492,17119031-17119114,17118826-17118942,17118500-17118737,17118308-17118423,17117906-17118219,17117707-17117806,17117568-17117624,17117391-17117474,17117179-17117295,17116630-17116932	AT5G42690.1  CDS  gene_syn MJB21.6, MJB21_6  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37080.2); Has 505 Blast hits to 495 proteins in 102 species: Archae - 0; Bacteria - 146; Metazoa - 32; Fungi - 2; Plants - 269; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT5G42690.1p  transcript_id AT5G42690.1  protein_id AT5G42690.1p  transcript_id AT5G42690.1  
At5g42690	chr5:017119403	0.0	C/17119403-17119492,17119031-17119114,17118826-17118942,17118500-17118737,17118308-17118423,17117906-17118222,17117707-17117806,17117568-17117624,17117391-17117474,17117179-17117295,17116630-17116932	AT5G42690.2  CDS  gene_syn MJB21.6, MJB21_6  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37080.2); Has 517 Blast hits to 506 proteins in 106 species: Archae - 0; Bacteria - 150; Metazoa - 32; Fungi - 2; Plants - 270; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT5G42690.2p  transcript_id AT5G42690.2  protein_id AT5G42690.2p  transcript_id AT5G42690.2  
At5g42700	chr5:017122171	0.0	W/17122171-17122305,17122384-17122425,17122603-17122634,17122724-17122889,17123841-17124047,17124124-17124177	AT5G42700.1  CDS  gene_syn MJB21.7, MJB21_7  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product transcriptional factor B3 family protein  note transcriptional factor B3 family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT3G19184.1); Has 126 Blast hits to 119 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 123; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G42700.1p  transcript_id AT5G42700.1  protein_id AT5G42700.1p  transcript_id AT5G42700.1  
At5g42710	chr5:017125578	0.0	W/17125578-17125695,17126077-17126126,17126219-17127769,17127847-17127946,17128092-17128696	AT5G42710.1  CDS  gene_syn MJB21.8, MJB21_8  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; Has 6813 Blast hits to 5180 proteins in 314 species: Archae - 9; Bacteria - 312; Metazoa - 2428; Fungi - 267; Plants - 128; Viruses - 19; Other Eukaryotes - 3650 (source: NCBI BLink).  protein_id AT5G42710.1p  transcript_id AT5G42710.1  protein_id AT5G42710.1p  transcript_id AT5G42710.1  
At5g42720	chr5:017130535	0.0	W/17130535-17130595,17130679-17131346,17131908-17132240,17132509-17132763	AT5G42720.1  CDS  gene_syn MJB21.9, MJB21_9  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT4G34480.1); Has 1391 Blast hits to 1382 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 10; Plants - 1378; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G42720.1p  transcript_id AT5G42720.1  protein_id AT5G42720.1p  transcript_id AT5G42720.1  
At5g42730	chr5:017133085	0.0	W/17133085-17134215	AT5G42730.1  pseudogenic_transcript  pseudo  gene_syn MJB21.10, MJB21_10  function pseudogene similar to ACT domain-containing protein, similar to F-box family protein  note expressed protein, similar to Adagio 3 (Arabidopsis thaliana) GI:13487072/FKF1 (Arabidopsis thaliana) GI:6960305  
At5g42740	chr5:017136080	0.0	W/17136080-17136133,17136227-17136303,17136461-17136542,17136626-17136673,17136858-17137013,17137095-17137191,17137290-17137332,17137610-17137677,17137769-17137853,17138034-17138082,17138360-17138432,17138509-17138569,17138852-17138918,17139116-17139172,17139262-17139315,17139434-17139562,17139678-17139741,17139834-17139907,17140003-17140056,17140154-17140222,17140322-17140519,17140599-17140622	AT5G42740.1  CDS  gene_syn MJB21.12, MJB21_12  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function glucose-6-phosphate isomerase activity|GO:0004347||IEA  go_component cellular_component|GO:0005575||ND  go_process gluconeogenesis|GO:0006094||ISS  go_process glycolysis|GO:0006096||ISS  go_function glucose-6-phosphate isomerase activity|GO:0004347||ISS  product glucose-6-phosphate isomerase, cytosolic (PGIC)  note glucose-6-phosphate isomerase, cytosolic (PGIC); FUNCTIONS IN: glucose-6-phosphate isomerase activity; INVOLVED IN: response to cadmium ion, gluconeogenesis, glycolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglucose isomerase, conserved site (InterPro:IPR018189), Phosphoglucose isomerase (PGI) (InterPro:IPR001672); BEST Arabidopsis thaliana protein match is: PGI1 (PHOSPHOGLUCOSE ISOMERASE 1); glucose-6-phosphate isomerase (TAIR:AT4G24620.2); Has 7416 Blast hits to 7411 proteins in 2035 species: Archae - 34; Bacteria - 3763; Metazoa - 548; Fungi - 156; Plants - 870; Viruses - 0; Other Eukaryotes - 2045 (source: NCBI BLink).  protein_id AT5G42740.1p  transcript_id AT5G42740.1  protein_id AT5G42740.1p  transcript_id AT5G42740.1  
At5g42750	chr5:017143028	0.0	C/17143028-17144041	AT5G42750.1  CDS  gene_syn BKI1, BRI1 kinase inhibitor 1, MJB21.13, MJB21_13  gene BKI1  function Encodes a plasma-membrane associated phosphoprotein that interacts directly with the kinase domain of BRI1. It interferes with the interaction between BRI1 with its signalling partner, the plasma membrane localised LRR-receptor kinase BAK1.  go_component cytosol|GO:0005829|16857903|IDA  go_component plasma membrane|GO:0005886|16857903|IDA  go_process negative regulation of brassinosteroid biosynthetic process|GO:0010423|16857903|IMP  go_function protein heterodimerization activity|GO:0046982|16857903|IPI  product BKI1 (BRI1 kinase inhibitor 1); protein heterodimerization  note BRI1 kinase inhibitor 1 (BKI1); FUNCTIONS IN: protein heterodimerization activity; INVOLVED IN: negative regulation of brassinosteroid biosynthetic process; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; Has 208 Blast hits to 145 proteins in 43 species: Archae - 0; Bacteria - 67; Metazoa - 45; Fungi - 7; Plants - 36; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT5G42750.1p  transcript_id AT5G42750.1  protein_id AT5G42750.1p  transcript_id AT5G42750.1  
At5g42760	chr5:017148953	0.0	W/17148953-17149370,17149477-17150105	AT5G42760.1  CDS  gene_syn MJB21.14, MJB21_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00027, methylltransferase (InterPro:IPR011610), O-methyltransferase, N-terminal (InterPro:IPR003455); Has 888 Blast hits to 888 proteins in 139 species: Archae - 36; Bacteria - 741; Metazoa - 23; Fungi - 3; Plants - 27; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT5G42760.1p  transcript_id AT5G42760.1  protein_id AT5G42760.1p  transcript_id AT5G42760.1  
At5g42765	chr5:017151434	0.0	C/17151434-17151641,17151107-17151342,17150906-17151006,17150720-17150779,17150505-17150589	AT5G42765.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Twin-arginine translocation pathway signal (InterPro:IPR006311); Has 13 Blast hits to 13 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G42765.1p  transcript_id AT5G42765.1  protein_id AT5G42765.1p  transcript_id AT5G42765.1  
At5g42770	chr5:017152147	0.0	W/17152147-17152173,17152361-17152432,17152530-17152604,17153217-17153297,17153563-17153632,17153705-17153796,17153887-17153928,17154007-17154087,17154275-17154355	AT5G42770.1  CDS  gene_syn MJB21.15, MJB21_15  go_component cytoplasm|GO:0005737||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Maf-like protein (InterPro:IPR003697); BEST Arabidopsis thaliana protein match is: Maf family protein (TAIR:AT5G66550.1); Has 4061 Blast hits to 4057 proteins in 1128 species: Archae - 23; Bacteria - 2744; Metazoa - 45; Fungi - 50; Plants - 61; Viruses - 0; Other Eukaryotes - 1138 (source: NCBI BLink).  protein_id AT5G42770.1p  transcript_id AT5G42770.1  protein_id AT5G42770.1p  transcript_id AT5G42770.1  
At5g42780	chr5:017154841	0.0	W/17154841-17155569	AT5G42780.1  CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 27, AtHB27, MJB21.16, MJB21_16  gene AtHB27  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_function DNA binding|GO:0003677|16428600|ISS  go_function transcription factor activity|GO:0003700||ISS  product AtHB27 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 27); DNA binding / transcription factor  note ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 27 (AtHB27); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein Cys/His-rich dimerisation region (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ATHB22 (HOMEOBOX PROTEIN 22); DNA binding / transcription factor (TAIR:AT4G24660.1); Has 284 Blast hits to 267 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 0; Plants - 265; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G42780.1p  transcript_id AT5G42780.1  protein_id AT5G42780.1p  transcript_id AT5G42780.1  
At5g42785	chr5:017157573	0.0	C/17157573-17157693,17157069-17157295	AT5G42785.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G42785.1p  transcript_id AT5G42785.1  protein_id AT5G42785.1p  transcript_id AT5G42785.1  
At5g42790	chr5:017160625	0.0	C/17160625-17160975,17159270-17159755	AT5G42790.1  CDS  gene_syn 20S PROTEASOME SUBUNIT PAF1, ATPSM30, MJB21.17, MJB21_17, PAF1, PROTEASOME ALPHA SUBUNIT F1  gene PAF1  function encodes a protein with extensive homology to the largest subunit of the multicatalytic proteinase complex (proteasome)  go_component plasma membrane|GO:0005886|17317660|IDA  go_function endopeptidase activity|GO:0004175||IEA  go_function threonine-type endopeptidase activity|GO:0004298||IEA  go_component proteasome complex|GO:0000502|8264533|ISS  go_component proteasome core complex|GO:0005839|9373170|TAS  go_component proteasome core complex|GO:0005839|9611183|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_process protein catabolic process|GO:0030163|8264533|ISS  go_function peptidase activity|GO:0008233||ISS  product PAF1; endopeptidase/ peptidase/ threonine-type endopeptidase  note PAF1; FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome alpha-subunit, conserved site (InterPro:IPR000426), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: PAF2; endopeptidase/ peptidase/ threonine-type endopeptidase (TAIR:AT1G47250.1); Has 4204 Blast hits to 4204 proteins in 339 species: Archae - 480; Bacteria - 0; Metazoa - 1574; Fungi - 933; Plants - 484; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink).  protein_id AT5G42790.1p  transcript_id AT5G42790.1  protein_id AT5G42790.1p  transcript_id AT5G42790.1  
At5g42797	chr5:017163196	0.0	W/17163196-17163279,17163413-17163574	AT5G42797.1  CDS  gene_syn LCR28, Low-molecular-weight cysteine-rich 28  gene LCR28  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||IEA  product LCR28 (Low-molecular-weight cysteine-rich 28)  note Low-molecular-weight cysteine-rich 28 (LCR28); INVOLVED IN: defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: LCR13 (Low-molecular-weight cysteine-rich 13) (TAIR:AT4G09795.1); Has 11 Blast hits to 11 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G42797.1p  transcript_id AT5G42797.1  protein_id AT5G42797.1p  transcript_id AT5G42797.1  
At5g42800	chr5:017165747	0.0	C/17165747-17165864,17165486-17165655,17165211-17165405,17164973-17165132,17164701-17164893,17164296-17164608	AT5G42800.1  CDS  gene_syn DFR, DIHYDROFLAVONOL 4-REDUCTASE, DIHYDROKAEMPFEROL 4-REDUCTASE, M318, MJB21.18, MJB21_18, TT3  gene DFR  function dihydroflavonol reductase. Catalyzes the conversion of dihydroquercetin to leucocyanidin in the biosynthesis of anthocyanins.  go_component extrinsic to endoplasmic reticulum membrane|GO:0042406|10536025|TAS  go_process anthocyanin biosynthetic process|GO:0009718|12297632|TAS  go_process anthocyanin biosynthetic process|GO:0009718|1354004|IMP  go_process response to sucrose stimulus|GO:0009744|16384906|IEP  go_function dihydrokaempferol 4-reductase activity|GO:0045552|12297632|TAS  go_function dihydrokaempferol 4-reductase activity|GO:0045552|1354004|IMP  product DFR (DIHYDROFLAVONOL 4-REDUCTASE); dihydrokaempferol 4-reductase  note DIHYDROFLAVONOL 4-REDUCTASE (DFR); FUNCTIONS IN: dihydrokaempferol 4-reductase activity; INVOLVED IN: response to sucrose stimulus, anthocyanin biosynthetic process; LOCATED IN: extrinsic to endoplasmic reticulum membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: BAN (BANYULS); oxidoreductase (TAIR:AT1G61720.1); Has 6926 Blast hits to 6915 proteins in 1111 species: Archae - 99; Bacteria - 2431; Metazoa - 363; Fungi - 544; Plants - 1450; Viruses - 48; Other Eukaryotes - 1991 (source: NCBI BLink).  protein_id AT5G42800.1p  transcript_id AT5G42800.1  protein_id AT5G42800.1p  transcript_id AT5G42800.1  
At5g42810	chr5:017167073	0.0	W/17167073-17167174,17167530-17167742,17167827-17167974,17168055-17168095,17168178-17168288,17168379-17168969,17169188-17169337	AT5G42810.1  CDS  gene_syn ATIPK1, Inositol-pentakisphosphate 2-kinase 1, M40H3, MJB21.19, MJB21_19  gene ATIPK1  function Encodes an inositol tetra-/pentaphosphate 2-kinase, involved in the biosynthesis of phytic acid, a regulator of intracellular signaling, a highly abundant animal antinutrient, and a phosphate and mineral storage compound in plant seeds.  go_component cellular_component|GO:0005575||ND  go_process myo-inositol hexakisphosphate biosynthetic process|GO:0010264|16107538|IMP  go_process cellular phosphate ion homeostasis|GO:0030643|16107538|IMP  go_process defense response to bacterium|GO:0042742|18643983|IMP  go_process defense response to fungus|GO:0050832|18643983|IMP  go_process defense response to virus|GO:0051607|18643983|IMP  go_function inositol tetrakisphosphate 2-kinase activity|GO:0032942|16107538|IDA  go_function inositol pentakisphosphate 2-kinase activity|GO:0035299|16107538|IDA  product ATIPK1 (Inositol-pentakisphosphate 2-kinase 1); inositol pentakisphosphate 2-kinase/ inositol tetrakisphosphate 2-kinase  note Inositol-pentakisphosphate 2-kinase 1 (ATIPK1); FUNCTIONS IN: inositol pentakisphosphate 2-kinase activity, inositol tetrakisphosphate 2-kinase activity; INVOLVED IN: defense response to virus, myo-inositol hexakisphosphate biosynthetic process, defense response to fungus, defense response to bacterium, cellular phosphate ion homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inositol-pentakisphosphate 2-kinase, metazoa (InterPro:IPR018009), Inositol-pentakisphosphate 2-kinase (InterPro:IPR009286); BEST Arabidopsis thaliana protein match is: ATP binding / inositol pentakisphosphate 2-kinase (TAIR:AT1G22100.1); Has 201 Blast hits to 166 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 12; Plants - 52; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT5G42810.1p  transcript_id AT5G42810.1  protein_id AT5G42810.1p  transcript_id AT5G42810.1  
At5g42820	chr5:017170445	0.0	C/17170445-17171296	AT5G42820.1  CDS  gene_syn ATU2AF35B, MJB21.20, MJB21_20, U2AF35B  gene U2AF35B  function U2 auxiliary factor small subunit. The atU2AF35b protein and its homolog, atU2AF35a, contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83% identical, and each Arabidopsis homolog shows approximately 70% similarity to hsU2AF35. U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634|16407443|IDA  go_process photoperiodism, flowering|GO:0048573|16407443|IMP  go_function RNA binding|GO:0003723||ISS  product U2AF35B; RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding  note U2AF35B; FUNCTIONS IN: RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding; INVOLVED IN: photoperiodism, flowering; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), U2 auxiliary factor small subunit (InterPro:IPR009145); BEST Arabidopsis thaliana protein match is: ATU2AF35A; RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding (TAIR:AT1G27650.1); Has 6472 Blast hits to 4407 proteins in 293 species: Archae - 0; Bacteria - 82; Metazoa - 4278; Fungi - 720; Plants - 482; Viruses - 27; Other Eukaryotes - 883 (source: NCBI BLink).  protein_id AT5G42820.1p  transcript_id AT5G42820.1  protein_id AT5G42820.1p  transcript_id AT5G42820.1  
At5g42820	chr5:017170445	0.0	C/17170445-17171296	AT5G42820.2  CDS  gene_syn ATU2AF35B, MJB21.20, MJB21_20, U2AF35B  gene U2AF35B  function U2 auxiliary factor small subunit. The atU2AF35b protein and its homolog, atU2AF35a, contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83% identical, and each Arabidopsis homolog shows approximately 70% similarity to hsU2AF35. U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634|16407443|IDA  go_process photoperiodism, flowering|GO:0048573|16407443|IMP  go_function RNA binding|GO:0003723||ISS  product U2AF35B; RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding  note U2AF35B; FUNCTIONS IN: RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding; INVOLVED IN: photoperiodism, flowering; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), U2 auxiliary factor small subunit (InterPro:IPR009145); BEST Arabidopsis thaliana protein match is: ATU2AF35A; RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding (TAIR:AT1G27650.1); Has 6472 Blast hits to 4407 proteins in 293 species: Archae - 0; Bacteria - 82; Metazoa - 4278; Fungi - 720; Plants - 482; Viruses - 27; Other Eukaryotes - 883 (source: NCBI BLink).  protein_id AT5G42820.2p  transcript_id AT5G42820.2  protein_id AT5G42820.2p  transcript_id AT5G42820.2  
At5g42825	chr5:017171964	0.0	W/17171964-17172257	AT5G42825.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G42825.1p  transcript_id AT5G42825.1  protein_id AT5G42825.1p  transcript_id AT5G42825.1  
At5g42830	chr5:017176384	0.0	W/17176384-17176839,17177010-17177906	AT5G42830.1  CDS  gene_syn MBD2.2, MBD2_2  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT5G07850.1); Has 1313 Blast hits to 1309 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 86; Plants - 1227; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G42830.1p  transcript_id AT5G42830.1  protein_id AT5G42830.1p  transcript_id AT5G42830.1  
At5g42840	chr5:017179158	0.0	W/17179158-17181173	AT5G42840.1  CDS  gene_syn MBD2.3, MBD2_3  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, hypocotyl; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT3G27473.1); Has 1383 Blast hits to 500 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 1358; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT5G42840.1p  transcript_id AT5G42840.1  protein_id AT5G42840.1p  transcript_id AT5G42840.1  
At5g42850	chr5:017182421	0.0	C/17182421-17182568,17182072-17182328	AT5G42850.1  CDS  gene_syn MBD2.4, MBD2_4  go_component cellular_component|GO:0005575||ND  go_process cell redox homeostasis|GO:0045454|17031546|ISS  product unknown protein  note INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336), Protein of unknown function DUF953, thioredoxin-like (InterPro:IPR010357); Has 237 Blast hits to 237 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 174; Fungi - 29; Plants - 21; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT5G42850.1p  transcript_id AT5G42850.1  protein_id AT5G42850.1p  transcript_id AT5G42850.1  
At5g42850	chr5:017182421	0.0	C/17182421-17182568,17182072-17182328	AT5G42850.2  CDS  gene_syn MBD2.4, MBD2_4  go_component cellular_component|GO:0005575||ND  go_process cell redox homeostasis|GO:0045454|17031546|ISS  product unknown protein  note INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336), Protein of unknown function DUF953, thioredoxin-like (InterPro:IPR010357); Has 237 Blast hits to 237 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 174; Fungi - 29; Plants - 21; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT5G42850.2p  transcript_id AT5G42850.2  protein_id AT5G42850.2p  transcript_id AT5G42850.2  
At5g42860	chr5:017184432	0.0	C/17184432-17184857,17184164-17184349,17183339-17183689	AT5G42860.1  CDS  gene_syn MBD2.5, MBD2_5  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G45688.1); Has 116 Blast hits to 115 proteins in 22 species: Archae - 0; Bacteria - 2; Metazoa - 6; Fungi - 8; Plants - 91; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT5G42860.1p  transcript_id AT5G42860.1  protein_id AT5G42860.1p  transcript_id AT5G42860.1  
At5g42870	chr5:017188755	0.0	C/17188755-17189681,17187941-17188631,17187282-17187811,17187128-17187201,17186926-17187010,17186728-17186814,17186575-17186647,17186436-17186479,17186222-17186350,17185848-17185946,17185719-17185772	AT5G42870.1  CDS  gene_syn MBD2.6, MBD2_6  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process biological_process|GO:0008150||ND  product lipin family protein  note lipin family protein; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LNS2, Lipin/Ned1/Smp2 (InterPro:IPR013209), Lipin, N-terminal conserved region (InterPro:IPR007651); BEST Arabidopsis thaliana protein match is: lipin family protein (TAIR:AT3G09560.3); Has 1138 Blast hits to 667 proteins in 184 species: Archae - 0; Bacteria - 171; Metazoa - 480; Fungi - 266; Plants - 65; Viruses - 0; Other Eukaryotes - 156 (source: NCBI BLink).  protein_id AT5G42870.1p  transcript_id AT5G42870.1  protein_id AT5G42870.1p  transcript_id AT5G42870.1  
At5g42880	chr5:017191758	0.0	W/17191758-17192252,17192331-17194091	AT5G42880.1  CDS  gene_syn MBD2.7, MBD2_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G45545.1); Has 111544 Blast hits to 55614 proteins in 2170 species: Archae - 1469; Bacteria - 19238; Metazoa - 53213; Fungi - 8171; Plants - 4621; Viruses - 519; Other Eukaryotes - 24313 (source: NCBI BLink).  protein_id AT5G42880.1p  transcript_id AT5G42880.1  protein_id AT5G42880.1p  transcript_id AT5G42880.1  
At5g42890	chr5:017195785	0.0	C/17195785-17195910,17195643-17195703,17195276-17195378,17194458-17194539	AT5G42890.1  CDS  gene_syn ATSCP2, MBD2.8, MBD2_8, SCP2, STEROL CARRIER PROTEIN 2  gene SCP2  go_component peroxisome|GO:0005777|17951448|IDA  go_function sterol carrier activity|GO:0005498||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process fatty acid beta-oxidation|GO:0006635|18687588|IEP  go_process seed germination|GO:0009845|18687588|IDA  go_process seed germination|GO:0009845|18687588|IMP  go_process intracellular lipid transport|GO:0032365|18687588|TAS  go_process glyoxylate metabolic process|GO:0046487|18687588|IMP  go_function sterol carrier activity|GO:0005498||ISS  product SCP2 (STEROL CARRIER PROTEIN 2); oxidoreductase/ sterol carrier  note STEROL CARRIER PROTEIN 2 (SCP2); FUNCTIONS IN: sterol carrier activity, oxidoreductase activity; INVOLVED IN: glyoxylate metabolic process, intracellular lipid transport, fatty acid beta-oxidation, seed germination; LOCATED IN: peroxisome; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Sterol-binding-like (InterPro:IPR016083), Sterol-binding (InterPro:IPR003033), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); Has 584 Blast hits to 578 proteins in 125 species: Archae - 0; Bacteria - 23; Metazoa - 411; Fungi - 75; Plants - 33; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT5G42890.1p  transcript_id AT5G42890.1  protein_id AT5G42890.1p  transcript_id AT5G42890.1  
At5g42895	chr5:017196795	0.0	W/17196795-17197163	AT5G42895.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09545.1); Has 67 Blast hits to 64 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G42895.1p  transcript_id AT5G42895.1  protein_id AT5G42895.1p  transcript_id AT5G42895.1  
At5g42900	chr5:017199605	0.0	C/17199605-17199712,17199067-17199249,17198693-17198978,17198503-17198606,17198366-17198422	AT5G42900.3  CDS  gene_syn MBD2.9, MBD2_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G33980.1); Has 51 Blast hits to 51 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G42900.3p  transcript_id AT5G42900.3  protein_id AT5G42900.3p  transcript_id AT5G42900.3  
At5g42900	chr5:017199605	0.0	C/17199605-17199712,17199067-17199249,17198693-17198978,17198503-17198609,17198366-17198422	AT5G42900.1  CDS  gene_syn MBD2.9, MBD2_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G33980.1); Has 51 Blast hits to 51 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G42900.1p  transcript_id AT5G42900.1  protein_id AT5G42900.1p  transcript_id AT5G42900.1  
At5g42900	chr5:017199605	0.0	C/17199605-17199712,17199067-17199249,17198693-17198978,17198503-17198609,17198366-17198422	AT5G42900.2  CDS  gene_syn MBD2.9, MBD2_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G33980.1); Has 51 Blast hits to 51 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G42900.2p  transcript_id AT5G42900.2  protein_id AT5G42900.2p  transcript_id AT5G42900.2  
At5g42905	chr5:017201575	0.0	C/17201575-17202323,17201414-17201441	AT5G42905.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_function ribonuclease H activity|GO:0004523||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding / ribonuclease H  note nucleic acid binding / ribonuclease H; FUNCTIONS IN: ribonuclease H activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706), Ribonuclease H (InterPro:IPR002156); BEST Arabidopsis thaliana protein match is: reverse transcriptase-related (TAIR:AT2G02650.1); Has 167 Blast hits to 166 proteins in 23 species: Archae - 0; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 140; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT5G42905.1p  transcript_id AT5G42905.1  protein_id AT5G42905.1p  transcript_id AT5G42905.1  
At5g42910	chr5:017203908	0.0	W/17203908-17204852,17204946-17205047,17205146-17205211	AT5G42910.1  CDS  gene_syn MBD2.11, MBD2_11  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|11019812|TAS  go_process response to stress|GO:0006950|10636868|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|10760247|TAS  go_function transcription factor activity|GO:0003700|11019812|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription activator activity|GO:0016563|10636868|TAS  product basic leucine zipper transcription factor (BZIP15)  note basic leucine zipper transcription factor (BZIP15); FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, response to stress; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: ABF2 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 2); DNA binding / protein binding / transcription activator/ transcription factor (TAIR:AT1G45249.1); Has 594 Blast hits to 549 proteins in 69 species: Archae - 0; Bacteria - 2; Metazoa - 60; Fungi - 8; Plants - 500; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT5G42910.1p  transcript_id AT5G42910.1  protein_id AT5G42910.1p  transcript_id AT5G42910.1  
At5g42920	chr5:017208915	0.0	C/17208915-17209106,17208499-17208835,17208085-17208422,17207729-17207976,17206884-17207475,17206664-17206798,17206310-17206576	AT5G42920.1  CDS  gene_syn MBD2.12, MBD2_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G45233.2); Has 282 Blast hits to 212 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 192; Fungi - 44; Plants - 28; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT5G42920.1p  transcript_id AT5G42920.1  protein_id AT5G42920.1p  transcript_id AT5G42920.1  
At5g42920	chr5:017209271	0.0	C/17209271-17209522,17208915-17209205,17208499-17208835,17208085-17208422,17207729-17207976,17206884-17207475,17206664-17206798,17206310-17206576	AT5G42920.2  CDS  gene_syn MBD2.12, MBD2_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G45233.2); Has 323 Blast hits to 253 proteins in 97 species: Archae - 0; Bacteria - 0; Metazoa - 205; Fungi - 55; Plants - 29; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT5G42920.2p  transcript_id AT5G42920.2  protein_id AT5G42920.2p  transcript_id AT5G42920.2  
At5g42930	chr5:017213849	0.0	C/17213849-17214152,17213231-17213424,17212369-17212402,17211725-17211860,17211118-17211601,17210738-17210989	AT5G42930.1  CDS  gene_syn MBD2.13, MBD2_13  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_component cellular_component|GO:0005575||ND  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product triacylglycerol lipase  note triacylglycerol lipase; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: triacylglycerol lipase (TAIR:AT1G56630.1); Has 964 Blast hits to 960 proteins in 190 species: Archae - 0; Bacteria - 232; Metazoa - 46; Fungi - 232; Plants - 172; Viruses - 4; Other Eukaryotes - 278 (source: NCBI BLink).  protein_id AT5G42930.1p  transcript_id AT5G42930.1  protein_id AT5G42930.1p  transcript_id AT5G42930.1  
At5g42940	chr5:017217549	0.0	C/17217549-17219171,17217341-17217400,17217117-17217215,17216888-17217028,17216649-17216801	AT5G42940.1  CDS  gene_syn MBD2.14, MBD2_14  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G45180.1); Has 7165 Blast hits to 6465 proteins in 224 species: Archae - 2; Bacteria - 7; Metazoa - 2304; Fungi - 541; Plants - 2365; Viruses - 42; Other Eukaryotes - 1904 (source: NCBI BLink).  protein_id AT5G42940.1p  transcript_id AT5G42940.1  protein_id AT5G42940.1p  transcript_id AT5G42940.1  
At5g42950	chr5:017224436	0.0	W/17224436-17224517,17225028-17225116,17225194-17226063,17226146-17226266,17226352-17226447,17226689-17227465,17227554-17230044,17230137-17230327,17230405-17230464,17230677-17231044	AT5G42950.1  CDS  gene_syn MBD2.15, MBD2_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product GYF domain-containing protein  note GYF domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GYF (InterPro:IPR003169); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24300.1); Has 5230 Blast hits to 3533 proteins in 314 species: Archae - 2; Bacteria - 506; Metazoa - 2065; Fungi - 608; Plants - 278; Viruses - 13; Other Eukaryotes - 1758 (source: NCBI BLink).  protein_id AT5G42950.1p  transcript_id AT5G42950.1  protein_id AT5G42950.1p  transcript_id AT5G42950.1  
At5g42955	chr5:017231865	0.0	C/17231865-17232245	AT5G42955.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, sepal, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42957.1); Has 43 Blast hits to 43 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G42955.1p  transcript_id AT5G42955.1  protein_id AT5G42955.1p  transcript_id AT5G42955.1  
At5g42957	chr5:017233793	0.0	C/17233793-17234132,17233599-17233612	AT5G42957.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42955.1); Has 40 Blast hits to 40 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G42957.1p  transcript_id AT5G42957.1  protein_id AT5G42957.1p  transcript_id AT5G42957.1  
At5g42960	chr5:017235184	0.0	W/17235184-17235387,17235657-17236013,17236398-17236478	AT5G42960.1  CDS  gene_syn MBD2.16, MBD2_16  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G45170.1); Has 30 Blast hits to 30 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G42960.1p  transcript_id AT5G42960.1  protein_id AT5G42960.1p  transcript_id AT5G42960.1  
At5g42965	chr5:017236736	0.0	W/17236736-17237125	AT5G42965.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_function ribonuclease H activity|GO:0004523||IEA  go_process biological_process|GO:0008150||ND  product nucleic acid binding / ribonuclease H  note nucleic acid binding / ribonuclease H; FUNCTIONS IN: ribonuclease H activity, nucleic acid binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Ribonuclease H (InterPro:IPR002156); BEST Arabidopsis thaliana protein match is: reverse transcriptase, putative / RNA-dependent DNA polymerase, putative (TAIR:AT4G29090.1); Has 25 Blast hits to 25 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G42965.1p  transcript_id AT5G42965.1  protein_id AT5G42965.1p  transcript_id AT5G42965.1  
At5g42970	chr5:017240520	0.0	C/17240520-17240649,17240230-17240381,17239856-17239959,17239707-17239767,17239157-17239249,17238968-17239068,17238618-17238726,17238488-17238532,17238196-17238264,17238007-17238098,17237830-17237932,17237647-17237706,17237470-17237544	AT5G42970.1  CDS  gene_syn ATS4, CONSTITUTIVE PHOTOMORPHOGENIC 14, CONSTITUTIVE PHOTOMORPHOGENIC 8, COP14, COP8, COP9 SIGNALOSOME SUBUNIT 4, CSN4, EMB134, EMBRYO DEFECTIVE 134, FUS4, FUS8, FUSCA 4, FUSCA 8, MBD2.17, MBD2_17  gene COP8  function encodes subunit 4 of COP9 signalosome complex. sequence is similar to a subunit of the 19S regulatory particle of the 26S proteasome. recessive mutation causes derepression of photomorphogenesis.  go_component signalosome|GO:0008180|10521526|IDA  go_component signalosome|GO:0008180|10521526|IPI  go_component signalosome|GO:0008180|11019806|TAS  go_process G2 phase of mitotic cell cycle|GO:0000085|18434413|IMP  go_process photomorphogenesis|GO:0009640|11019806|TAS  go_process negative regulation of photomorphogenesis|GO:0010100|8038603|IMP  go_process cullin deneddylation|GO:0010388|17307927|IMP  go_function protein binding|GO:0005515|16844902|IPI  product COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8); protein binding  note CONSTITUTIVE PHOTOMORPHOGENIC 8 (COP8); FUNCTIONS IN: protein binding; INVOLVED IN: cullin deneddylation, negative regulation of photomorphogenesis, photomorphogenesis, G2 phase of mitotic cell cycle; LOCATED IN: signalosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component region PCI (InterPro:IPR000717), Winged helix repressor DNA-binding (InterPro:IPR011991); BEST Arabidopsis thaliana protein match is: RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) (TAIR:AT5G64760.2); Has 504 Blast hits to 502 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 249; Fungi - 133; Plants - 57; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT5G42970.1p  transcript_id AT5G42970.1  protein_id AT5G42970.1p  transcript_id AT5G42970.1  
At5g42980	chr5:017242772	0.0	W/17242772-17242858,17243351-17243473,17243572-17243718	AT5G42980.1  CDS  gene_syn ATH3, ATTRX3, ATTRXH3, MBD2.18, MBD2_18, THIOREDOXIN, THIOREDOXIN 3, THIOREDOXIN H3, TRXH3, thioredoxin H-type 3  gene ATTRX3  function encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells.  go_component cell wall|GO:0005618|15593128|IDA  go_component mitochondrion|GO:0005739|15276431|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosol|GO:0005829|19339505|IDA  go_component cytosol|GO:0005829|7777559|TAS  go_process response to microbial phytotoxin|GO:0010188|17322408|IMP  go_process response to hydrogen peroxide|GO:0042542|10906327|IGI  go_process defense response to fungus|GO:0050832|17322408|IMP  go_function oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor|GO:0016671|7777559|IDA  product ATTRX3 (THIOREDOXIN 3); oxidoreductase, acting on sulfur group of donors, disulfide as acceptor  note THIOREDOXIN 3 (ATTRX3); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: defense response to fungus, response to hydrogen peroxide, response to microbial phytotoxin; LOCATED IN: in 8 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATTRX5; oxidoreductase, acting on sulfur group of donors, disulfide as acceptor (TAIR:AT1G45145.1); Has 11820 Blast hits to 11705 proteins in 1698 species: Archae - 151; Bacteria - 5301; Metazoa - 1559; Fungi - 529; Plants - 1094; Viruses - 6; Other Eukaryotes - 3180 (source: NCBI BLink).  protein_id AT5G42980.1p  transcript_id AT5G42980.1  protein_id AT5G42980.1p  transcript_id AT5G42980.1  
At5g42990	chr5:017245875	0.0	C/17245875-17245904,17245687-17245790,17245497-17245599,17245213-17245276,17244407-17244495,17244206-17244301	AT5G42990.1  CDS  gene_syn MBD2.19, MBD2_19, UBC18, ubiquitin-conjugating enzyme 18  gene UBC18  go_function small conjugating protein ligase activity|GO:0019787||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC18 (ubiquitin-conjugating enzyme 18); small conjugating protein ligase/ ubiquitin-protein ligase  note ubiquitin-conjugating enzyme 18 (UBC18); FUNCTIONS IN: ubiquitin-protein ligase activity, small conjugating protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ATUBC2-1; ubiquitin-protein ligase (TAIR:AT1G45050.1); Has 6584 Blast hits to 6583 proteins in 298 species: Archae - 0; Bacteria - 0; Metazoa - 3149; Fungi - 1325; Plants - 1019; Viruses - 16; Other Eukaryotes - 1075 (source: NCBI BLink).  protein_id AT5G42990.1p  transcript_id AT5G42990.1  protein_id AT5G42990.1p  transcript_id AT5G42990.1  
At5g43000	chr5:017246354	0.0	C/17246354-17247202	AT5G43000.1  CDS  gene_syn MBD2.20, MBD2_20  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G43000.1p  transcript_id AT5G43000.1  protein_id AT5G43000.1p  transcript_id AT5G43000.1  
At5g43010	chr5:017250912	0.0	C/17250912-17251014,17250469-17250588,17250235-17250371,17249977-17250138,17249737-17249823,17249567-17249653,17249327-17249464,17248908-17249099,17248722-17248820,17248563-17248637	AT5G43010.1  CDS  gene_syn MBD2.21, MBD2_21, REGULATORY PARTICLE TRIPLE-A ATPASE 4A, RPT4A  gene RPT4A  function 26S proteasome AAA-ATPase subunit RPT4a (RPT4a) mRNA,  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleus|GO:0005634|11742986|TAS  go_component proteasome regulatory particle, base subcomplex|GO:0008540|9741626|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_function ATPase activity|GO:0016887|10417703|IGI  go_function ATPase activity|GO:0016887||ISS  product RPT4A; ATPase  note RPT4A; FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, cell wall, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: 26S proteasome regulatory complex subunit p42D, putative (TAIR:AT1G45000.1); Has 27704 Blast hits to 26010 proteins in 1899 species: Archae - 889; Bacteria - 9298; Metazoa - 4371; Fungi - 2500; Plants - 1856; Viruses - 34; Other Eukaryotes - 8756 (source: NCBI BLink).  protein_id AT5G43010.1p  transcript_id AT5G43010.1  protein_id AT5G43010.1p  transcript_id AT5G43010.1  
At5g43015	chr5:017251762	0.0	C/17251762-17254245	AT5G43015.1  mRNA_TE_gene  pseudo  function Mutator-like transposase family, has a 2.3e-39 P-value blast match to GB:AAA21566 mudrA of transposon= MuDR (MuDr-element) (Zea mays)  note Transposable element gene, Mutator-like transposase family, has a 2.3e-39 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At5g43020	chr5:017256353	0.0	C/17256353-17257742,17255426-17256045	AT5G43020.1  CDS  gene_syn MMG4.2, MMG4_2  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT5G67200.1); Has 71219 Blast hits to 53715 proteins in 1641 species: Archae - 32; Bacteria - 4773; Metazoa - 20221; Fungi - 3385; Plants - 34506; Viruses - 234; Other Eukaryotes - 8068 (source: NCBI BLink).  protein_id AT5G43020.1p  transcript_id AT5G43020.1  protein_id AT5G43020.1p  transcript_id AT5G43020.1  
At5g43030	chr5:017258991	0.0	C/17258991-17260685	AT5G43030.1  CDS  gene_syn MMG4.3, MMG4_3  go_process intracellular signaling cascade|GO:0007242||IEA  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; INVOLVED IN: intracellular signaling cascade; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower, root, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT5G43040.1); Has 699 Blast hits to 440 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 687; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G43030.1p  transcript_id AT5G43030.1  protein_id AT5G43030.1p  transcript_id AT5G43030.1  
At5g43035	chr5:017261344	0.0	C/17261344-17261756	AT5G43035.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 3.0e-16 P-value blast match to GB:CAA36616 ORF4 (Ty1_Copia-element) (Solanum tuberosum)  
At5g43040	chr5:017263965	0.0	C/17263965-17265620	AT5G43040.1  CDS  gene_syn MMG4.5, MMG4_5  go_process intracellular signaling cascade|GO:0007242||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular signaling cascade; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT5G43030.1); Has 763 Blast hits to 459 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 30; Fungi - 0; Plants - 729; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G43040.1p  transcript_id AT5G43040.1  protein_id AT5G43040.1p  transcript_id AT5G43040.1  
At5g43050	chr5:017268404	0.0	W/17268404-17268880	AT5G43050.1  CDS  gene_syn MMG4.6, MMG4_6  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF565 (InterPro:IPR007572); Has 129 Blast hits to 129 proteins in 47 species: Archae - 0; Bacteria - 59; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT5G43050.1p  transcript_id AT5G43050.1  protein_id AT5G43050.1p  transcript_id AT5G43050.1  
At5g43060	chr5:017271640	0.0	C/17271640-17272117,17270730-17270965,17270504-17270644,17269955-17270404,17269784-17269870	AT5G43060.1  CDS  gene_syn MMG4.7, MMG4_7  go_component vacuole|GO:0005773|15215502|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_function cysteine-type peptidase activity|GO:0008234||ISS  product cysteine proteinase, putative / thiol protease, putative  note cysteine proteinase, putative / thiol protease, putative; FUNCTIONS IN: cysteine-type peptidase activity, cysteine-type endopeptidase activity; INVOLVED IN: response to salt stress; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Granulin (InterPro:IPR000118), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: RD21 (responsive to dehydration 21); cysteine-type endopeptidase/ cysteine-type peptidase (TAIR:AT1G47128.1); Has 7000 Blast hits to 6290 proteins in 593 species: Archae - 25; Bacteria - 79; Metazoa - 3655; Fungi - 4; Plants - 1235; Viruses - 122; Other Eukaryotes - 1880 (source: NCBI BLink).  protein_id AT5G43060.1p  transcript_id AT5G43060.1  protein_id AT5G43060.1p  transcript_id AT5G43060.1  
At5g43065	chr5:017278182	0.0	W/17278182-17282396	AT5G43065.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.5e-20 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At5g43066	chr5:017284583	0.0	W/17284583-17284807	AT5G43066.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G43066.1p  transcript_id AT5G43066.1  protein_id AT5G43066.1p  transcript_id AT5G43066.1  
At5g43070	chr5:017289259	0.0	C/17289259-17289726	AT5G43070.1  CDS  gene_syn MMG4.9, MMG4_9, WPP domain protein 1, WPP1  gene WPP1  function WPP family members contains an NE targeting domain. This domain, called the WPP domain after a highly conserved Trp-Pro-Pro motif, is necessary and sufficient for NE targeting of WPP1. RNAi suppression of WPP1 resulted in reduced mitotic activity.  go_component nuclear outer membrane|GO:0005640|15548735|IDA  go_process lateral root development|GO:0048527|15548735|IMP  go_function molecular_function|GO:0003674||ND  product WPP1 (WPP domain protein 1)  note WPP domain protein 1 (WPP1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lateral root development; LOCATED IN: nuclear outer membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: WPP2 (TAIR:AT1G47200.1); Has 85 Blast hits to 85 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G43070.1p  transcript_id AT5G43070.1  protein_id AT5G43070.1p  transcript_id AT5G43070.1  
At5g43080	chr5:017293227	0.0	W/17293227-17293523,17293598-17293824,17293912-17294064,17294145-17294178,17294258-17294407,17294498-17294632,17294718-17294789	AT5G43080.1  CDS  gene_syn CYCA3;1, Cyclin A3;1, MMG4.10, MMG4_10  gene CYCA3;1  go_component nucleus|GO:0005634||IEA  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase regulator activity|GO:0016538||ISS  product CYCA3;1 (Cyclin A3;1); cyclin-dependent protein kinase regulator  note Cyclin A3;1 (CYCA3;1); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin (InterPro:IPR006670), G2/mitotic-specific cyclin A (InterPro:IPR015453), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400); BEST Arabidopsis thaliana protein match is: cyclin family protein (TAIR:AT1G47210.2); Has 3433 Blast hits to 3429 proteins in 297 species: Archae - 0; Bacteria - 0; Metazoa - 1776; Fungi - 364; Plants - 738; Viruses - 35; Other Eukaryotes - 520 (source: NCBI BLink).  protein_id AT5G43080.1p  transcript_id AT5G43080.1  protein_id AT5G43080.1p  transcript_id AT5G43080.1  
At5g43090	chr5:017295933	0.0	W/17295933-17296822,17296922-17297090,17297475-17297647,17297737-17297986,17298070-17298171	AT5G43090.1  CDS  gene_syn APUM13, Arabidopsis Pumilio 13, MMG4.11, MMG4_11  gene APUM13  go_function RNA binding|GO:0003723||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_function RNA binding|GO:0003723||ISS  product APUM13 (Arabidopsis Pumilio 13); RNA binding / binding  note Arabidopsis Pumilio 13 (APUM13); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding region (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: APUM14 (Arabidopsis Pumilio 14); RNA binding / binding (TAIR:AT5G43110.1); Has 1944 Blast hits to 1111 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 612; Fungi - 587; Plants - 277; Viruses - 0; Other Eukaryotes - 468 (source: NCBI BLink).  protein_id AT5G43090.1p  transcript_id AT5G43090.1  protein_id AT5G43090.1p  transcript_id AT5G43090.1  
At5g43100	chr5:017299264	0.0	W/17299264-17299484,17299558-17299678,17299765-17300192,17300288-17300444,17300756-17300838,17300921-17301017,17301127-17301196,17301373-17301573,17301942-17302066,17302157-17302258,17302341-17302438,17302526-17302718	AT5G43100.1  CDS  gene_syn MMG4.12, MMG4_12  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT3G50050.1); Has 3332 Blast hits to 3311 proteins in 289 species: Archae - 0; Bacteria - 0; Metazoa - 1443; Fungi - 428; Plants - 1141; Viruses - 0; Other Eukaryotes - 320 (source: NCBI BLink).  protein_id AT5G43100.1p  transcript_id AT5G43100.1  protein_id AT5G43100.1p  transcript_id AT5G43100.1  
At5g43105	chr5:017304711	0.0	W/17304711-17308952	AT5G43105.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.7e-39 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)  
At5g43110	chr5:017309842	0.0	W/17309842-17310707,17310810-17310975,17311240-17311412,17311502-17311751,17311836-17311937	AT5G43110.1  CDS  gene_syn APUM14, Arabidopsis Pumilio 14, MMG4.14, MMG4_14  gene APUM14  go_function RNA binding|GO:0003723||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_function RNA binding|GO:0003723||ISS  product APUM14 (Arabidopsis Pumilio 14); RNA binding / binding  note Arabidopsis Pumilio 14 (APUM14); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding region (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: APUM13 (Arabidopsis Pumilio 13); RNA binding / binding (TAIR:AT5G43090.1); Has 1501 Blast hits to 1070 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 380; Fungi - 495; Plants - 240; Viruses - 0; Other Eukaryotes - 386 (source: NCBI BLink).  protein_id AT5G43110.1p  transcript_id AT5G43110.1  protein_id AT5G43110.1p  transcript_id AT5G43110.1  
At5g43120	chr5:017312602	0.0	W/17312602-17314368	AT5G43120.1  CDS  gene_syn MMG4.15, MMG4_15  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product tetratricopeptide repeat (TPR)-containing protein  note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT5G10200.1); Has 323 Blast hits to 322 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 242; Fungi - 25; Plants - 32; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT5G43120.1p  transcript_id AT5G43120.1  protein_id AT5G43120.1p  transcript_id AT5G43120.1  
At5g43130	chr5:017321106	0.0	C/17321106-17321144,17320900-17321005,17319615-17320129,17319437-17319529,17318522-17318567,17317748-17318382,17317374-17317498,17317121-17317208,17316899-17317034,17316751-17316806,17316613-17316669,17316395-17316535,17316247-17316315,17315942-17316164,17315608-17315750	AT5G43130.1  CDS  gene_syn MMG4.16, MMG4_16, TAF4, TAF4B, TBP-ASSOCIATED FACTOR 4, TBP-ASSOCIATED FACTOR 4B  gene TAF4  go_component transcription factor TFIID complex|GO:0005669||IEA  go_process transcription initiation|GO:0006352||IEA  go_function transcription initiation factor activity|GO:0016986||IEA  go_function transcription initiation factor activity|GO:0016986||ISS  product TAF4 (TBP-ASSOCIATED FACTOR 4); transcription initiation factor  note TBP-ASSOCIATED FACTOR 4 (TAF4); FUNCTIONS IN: transcription initiation factor activity; INVOLVED IN: transcription initiation; LOCATED IN: transcription factor TFIID complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID component TAF4 (InterPro:IPR007900); BEST Arabidopsis thaliana protein match is: TAF4B (TBP-ASSOCIATED FACTOR 4B); transcription initiation factor (TAIR:AT1G27720.1); Has 4036 Blast hits to 1862 proteins in 214 species: Archae - 5; Bacteria - 93; Metazoa - 904; Fungi - 327; Plants - 89; Viruses - 12; Other Eukaryotes - 2606 (source: NCBI BLink).  protein_id AT5G43130.1p  transcript_id AT5G43130.1  protein_id AT5G43130.1p  transcript_id AT5G43130.1  
At5g43140	chr5:017321570	0.0	W/17321570-17321899,17322579-17322807,17322929-17323053,17323144-17323224	AT5G43140.1  CDS  gene_syn MMG4.17, MMG4_17  go_component integral to membrane|GO:0016021||IEA  go_component peroxisomal membrane|GO:0005778||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product peroxisomal membrane 22 kDa family protein  note peroxisomal membrane 22 kDa family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, peroxisomal membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mpv17/PMP22 (InterPro:IPR007248); BEST Arabidopsis thaliana protein match is: peroxisomal membrane protein 22 kDa, putative (TAIR:AT4G33905.1); Has 1048 Blast hits to 1048 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 523; Fungi - 276; Plants - 162; Viruses - 11; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT5G43140.1p  transcript_id AT5G43140.1  protein_id AT5G43140.1p  transcript_id AT5G43140.1  
At5g43150	chr5:017325076	0.0	W/17325076-17325175,17325514-17325689	AT5G43150.1  CDS  gene_syn MMG4.18, MMG4_18  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 50 Blast hits to 50 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G43150.1p  transcript_id AT5G43150.1  protein_id AT5G43150.1p  transcript_id AT5G43150.1  
At5g43160	chr5:017329275	0.0	W/17329275-17329580,17329769-17329888,17330125-17330241,17330323-17330412,17330507-17330614,17330692-17330736	AT5G43160.1  CDS  gene_syn MMG4.20, MMG4_20  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF566 (InterPro:IPR007573); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19570.2); Has 129 Blast hits to 101 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G43160.1p  transcript_id AT5G43160.1  protein_id AT5G43160.1p  transcript_id AT5G43160.1  
At5g43170	chr5:017331050	0.0	C/17331050-17331631	AT5G43170.1  CDS  gene_syn ARABIDOPSIS ZINC-FINGER PROTEIN 3, AZF3, MMG4.21, MMG4_21  gene AZF3  function Encodes zinc finger protein. mRNA levels are elevated in response to high salinity and low temperature. The protein is localized to the nucleus and acts as a transcriptional repressor.  go_component nucleus|GO:0005634|10806347|ISS  go_component nucleus|GO:0005634|15333755|IDA  go_process response to cold|GO:0009409|10806347|IEP  go_process response to chitin|GO:0010200|17722694|IEP  go_process hyperosmotic salinity response|GO:0042538|10806347|IEP  go_function nucleic acid binding|GO:0003676||ISS  go_function DNA binding|GO:0003677|10806347|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  go_function transcription repressor activity|GO:0016564|15333755|IDA  product AZF3 (ARABIDOPSIS ZINC-FINGER PROTEIN 3); DNA binding / nucleic acid binding / transcription factor/ transcription repressor/ zinc ion binding  note ARABIDOPSIS ZINC-FINGER PROTEIN 3 (AZF3); FUNCTIONS IN: transcription repressor activity, transcription factor activity, DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: hyperosmotic salinity response, response to cold, response to chitin; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: STZ (salt tolerance zinc finger); nucleic acid binding / transcription factor/ transcription repressor/ zinc ion binding (TAIR:AT1G27730.1); Has 4461 Blast hits to 3358 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 3880; Fungi - 0; Plants - 468; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).  protein_id AT5G43170.1p  transcript_id AT5G43170.1  protein_id AT5G43170.1p  transcript_id AT5G43170.1  
At5g43175	chr5:017334261	0.0	W/17334261-17334485,17334564-17334782,17334870-17335001,17335139-17335234	AT5G43175.1  CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT1G27740.1); Has 1520 Blast hits to 1520 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 1514; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G43175.1p  transcript_id AT5G43175.1  protein_id AT5G43175.1p  transcript_id AT5G43175.1  
At5g43180	chr5:017337652	0.0	C/17337652-17337816,17336425-17336979	AT5G43180.1  CDS  gene_syn K24F5.2, K24F5_2  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF599 (InterPro:IPR006747); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10580.1); Has 101 Blast hits to 101 proteins in 14 species: Archae - 0; Bacteria - 9; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G43180.1p  transcript_id AT5G43180.1  protein_id AT5G43180.1p  transcript_id AT5G43180.1  
At5g43185	chr5:017338554	0.0	C/17338554-17338805	AT5G43185.1  CDS  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Expressed protein  note Expressed protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G43185.1p  transcript_id AT5G43185.1  protein_id AT5G43185.1p  transcript_id AT5G43185.1  
At5g43190	chr5:017340300	0.0	C/17340300-17341511	AT5G43190.1  CDS  gene_syn MNL12.1, MNL12_1  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product F-box family protein (FBX6)  note F-box family protein (FBX6); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 2 (InterPro:IPR011498), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G15710.1); Has 336 Blast hits to 336 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 332; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G43190.1p  transcript_id AT5G43190.1  protein_id AT5G43190.1p  transcript_id AT5G43190.1  
At5g43196	chr5:017344553	0.0	W/17344553-17344885	AT5G43196.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G43210; endo/excinuclease amino terminal domain-containing protein  
At5g43200	chr5:017346141	0.0	C/17346141-17346764	AT5G43200.1  CDS  gene_syn MNL12.2, MNL12_2  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G28620.1); Has 5367 Blast hits to 5356 proteins in 200 species: Archae - 0; Bacteria - 6; Metazoa - 1678; Fungi - 410; Plants - 2346; Viruses - 30; Other Eukaryotes - 897 (source: NCBI BLink).  protein_id AT5G43200.1p  transcript_id AT5G43200.1  protein_id AT5G43200.1p  transcript_id AT5G43200.1  
At5g43210	chr5:017347567	0.0	W/17347567-17347802,17348002-17348108,17348210-17348379	AT5G43210.1  CDS  gene_syn MNL12.3, MNL12_3  go_component intracellular|GO:0005622||IEA  go_process DNA repair|GO:0006281||IEA  go_function nuclease activity|GO:0004518||IEA  go_component intracellular|GO:0005622||ISS  go_process DNA repair|GO:0006281||ISS  go_function nuclease activity|GO:0004518||ISS  product endo/excinuclease amino terminal domain-containing protein  note endo/excinuclease amino terminal domain-containing protein; FUNCTIONS IN: nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Excinuclease ABC, C subunit, N-terminal (InterPro:IPR000305); BEST Arabidopsis thaliana protein match is: endo/excinuclease amino terminal domain-containing protein (TAIR:AT2G30350.2); Has 331 Blast hits to 331 proteins in 114 species: Archae - 0; Bacteria - 17; Metazoa - 73; Fungi - 72; Plants - 31; Viruses - 3; Other Eukaryotes - 135 (source: NCBI BLink).  protein_id AT5G43210.1p  transcript_id AT5G43210.1  protein_id AT5G43210.1p  transcript_id AT5G43210.1  
At5g43211	chr5:017348722	0.0	C/17348722-17348886	AT5G43211.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G43211.1p  transcript_id AT5G43211.1  protein_id AT5G43211.1p  transcript_id AT5G43211.1  
At5g43230	chr5:017349125	0.0	W/17349125-17349772,17350425-17351306,17351389-17351592,17351693-17351866,17351957-17352154,17352226-17352339,17352421-17352747	AT5G43230.1  CDS  gene_syn MNL12.5, MNL12_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, LP.02 two leaves visible, E expanded cotyledon stage, LP.12 twelve leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01810.1); Has 76 Blast hits to 73 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 20; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G43230.1p  transcript_id AT5G43230.1  protein_id AT5G43230.1p  transcript_id AT5G43230.1  
At5g43240	chr5:017354109	0.0	C/17354109-17354333,17353288-17354040,17353077-17353205	AT5G43240.2  CDS  gene_syn MNL12.6, MNL12_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF674 (InterPro:IPR007750); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01120.1); Has 138 Blast hits to 102 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G43240.2p  transcript_id AT5G43240.2  protein_id AT5G43240.2p  transcript_id AT5G43240.2  
At5g43240	chr5:017354109	0.0	C/17354109-17354765,17353288-17354040,17353077-17353205	AT5G43240.1  CDS  gene_syn MNL12.6, MNL12_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF674 (InterPro:IPR007750); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01120.1); Has 206 Blast hits to 129 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 204; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G43240.1p  transcript_id AT5G43240.1  protein_id AT5G43240.1p  transcript_id AT5G43240.1  
At5g43240	chr5:017354109	0.0	C/17354109-17354765,17353288-17354040,17353077-17353205	AT5G43240.3  CDS  gene_syn MNL12.6, MNL12_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF674 (InterPro:IPR007750); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01120.1); Has 206 Blast hits to 129 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 204; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G43240.3p  transcript_id AT5G43240.3  protein_id AT5G43240.3p  transcript_id AT5G43240.3  
At5g43245	chr5:017355686	0.0	C/17355686-17355823	AT5G43245.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G43245.1p  transcript_id AT5G43245.1  protein_id AT5G43245.1p  transcript_id AT5G43245.1  
At5g43250	chr5:017356174	0.0	C/17356174-17356566	AT5G43250.1  CDS  gene_syn MNL12.7, MNL12_7, NF-YC13, NUCLEAR FACTOR Y, SUBUNIT C13  gene NF-YC13  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YC13 (NUCLEAR FACTOR Y, SUBUNIT C13); DNA binding / transcription factor  note NUCLEAR FACTOR Y, SUBUNIT C13 (NF-YC13); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2); DNA binding / transcription activator/ transcription factor (TAIR:AT1G56170.2); Has 731 Blast hits to 731 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 306; Fungi - 187; Plants - 188; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT5G43250.1p  transcript_id AT5G43250.1  protein_id AT5G43250.1p  transcript_id AT5G43250.1  
At5g43260	chr5:017357693	0.0	C/17357693-17357986	AT5G43260.1  CDS  gene_syn MNL12.8, MNL12_8  product chaperone protein dnaJ-related  note chaperone protein dnaJ-related; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 66 Blast hits to 65 proteins in 21 species: Archae - 0; Bacteria - 15; Metazoa - 2; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT5G43260.1p  transcript_id AT5G43260.1  protein_id AT5G43260.1p  transcript_id AT5G43260.1  
At5g43270	chr5:017361500	0.0	C/17361500-17362143,17361309-17361412,17360916-17361128,17360527-17360825	AT5G43270.1  CDS  gene_syn MNL12.9, MNL12_9, SPL2, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2  gene SPL2  function member of the SPL (squamosa-promoter binding protein-like) gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. The genes are characterized by the presence of the SBP-box, which encodes a protein domain, the  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product SPL2 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2); DNA binding / transcription factor  note SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 (SPL2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-binding protein-like 10 (SPL10) (TAIR:AT1G27370.4); Has 549 Blast hits to 549 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 549; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G43270.1p  transcript_id AT5G43270.1  protein_id AT5G43270.1p  transcript_id AT5G43270.1  
At5g43270	chr5:017361500	0.0	C/17361500-17362143,17361309-17361412,17360916-17361128,17360527-17360825	AT5G43270.2  CDS  gene_syn MNL12.9, MNL12_9, SPL2, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2  gene SPL2  function member of the SPL (squamosa-promoter binding protein-like) gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. The genes are characterized by the presence of the SBP-box, which encodes a protein domain, the  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product SPL2 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2); DNA binding / transcription factor  note SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 (SPL2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-binding protein-like 10 (SPL10) (TAIR:AT1G27370.4); Has 549 Blast hits to 549 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 549; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G43270.2p  transcript_id AT5G43270.2  protein_id AT5G43270.2p  transcript_id AT5G43270.2  
At5g43270	chr5:017361500	0.0	C/17361500-17362143,17361309-17361412,17360916-17361128,17360527-17360825	AT5G43270.3  CDS  gene_syn MNL12.9, MNL12_9, SPL2, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2  gene SPL2  function member of the SPL (squamosa-promoter binding protein-like) gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. The genes are characterized by the presence of the SBP-box, which encodes a protein domain, the  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product SPL2 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2); DNA binding / transcription factor  note SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 (SPL2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-binding protein-like 10 (SPL10) (TAIR:AT1G27370.4); Has 549 Blast hits to 549 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 549; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G43270.3p  transcript_id AT5G43270.3  protein_id AT5G43270.3p  transcript_id AT5G43270.3  
At5g43280	chr5:017367947	0.0	W/17367947-17368592,17368734-17368750	AT5G43280.2  CDS  gene_syn ATDCI1, DCI1, DELTA(3,5),DELTA(2,4)-DIENOYL-, DELTA(3,5),DELTA(2,4)-DIENOYL-COA ISOMERASE 1, MNL12.10, MNL12_10  gene ATDCI1  function Encodes the peroxisomal delta 3,5-delta2,4-dienoyl-CoA isomerase, a enzyme involved in degradation of unsaturated fatty acids. Gene expression is induced upon seed germination.  go_component peroxisome|GO:0005777|17951448|IDA  go_component peroxisome|GO:0005777|16040662|IDA  go_process metabolic process|GO:0008152||ISS  go_process fatty acid catabolic process|GO:0009062|16040662|TAS  go_process seed germination|GO:0009845|16040662|IEP  go_function enoyl-CoA hydratase activity|GO:0004300||ISS  go_function delta3,5-delta2,4-dienoyl-CoA isomerase activity|GO:0051750|16040662|IDA  go_function delta3,5-delta2,4-dienoyl-CoA isomerase activity|GO:0051750|16040662|IGI  product ATDCI1 (DELTA(3,5),DELTA(2,4)-DIENOYL-COA ISOMERASE 1); delta3,5-delta2,4-dienoyl-CoA isomerase/ enoyl-CoA hydratase  note DELTA(3,5),DELTA(2,4)-DIENOYL-COA ISOMERASE 1 (ATDCI1); FUNCTIONS IN: enoyl-CoA hydratase activity, delta3,5-delta2,4-dienoyl-CoA isomerase activity; INVOLVED IN: fatty acid catabolic process, seed germination, metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Enoyl-CoA hydratase/isomerase, conserved site (InterPro:IPR018376), Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A); catalytic (TAIR:AT4G16210.1); Has 25563 Blast hits to 25562 proteins in 1290 species: Archae - 195; Bacteria - 14202; Metazoa - 1455; Fungi - 564; Plants - 351; Viruses - 0; Other Eukaryotes - 8796 (source: NCBI BLink).  protein_id AT5G43280.2p  transcript_id AT5G43280.2  protein_id AT5G43280.2p  transcript_id AT5G43280.2  
At5g43280	chr5:017367947	0.0	W/17367947-17368592,17368923-17369113	AT5G43280.1  CDS  gene_syn ATDCI1, DCI1, DELTA(3,5),DELTA(2,4)-DIENOYL-, DELTA(3,5),DELTA(2,4)-DIENOYL-COA ISOMERASE 1, MNL12.10, MNL12_10  gene ATDCI1  function Encodes the peroxisomal delta 3,5-delta2,4-dienoyl-CoA isomerase, a enzyme involved in degradation of unsaturated fatty acids. Gene expression is induced upon seed germination.  go_component peroxisome|GO:0005777|17951448|IDA  go_component peroxisome|GO:0005777|16040662|IDA  go_process metabolic process|GO:0008152||ISS  go_process fatty acid catabolic process|GO:0009062|16040662|TAS  go_process seed germination|GO:0009845|16040662|IEP  go_function enoyl-CoA hydratase activity|GO:0004300||ISS  go_function delta3,5-delta2,4-dienoyl-CoA isomerase activity|GO:0051750|16040662|IDA  go_function delta3,5-delta2,4-dienoyl-CoA isomerase activity|GO:0051750|16040662|IGI  product ATDCI1 (DELTA(3,5),DELTA(2,4)-DIENOYL-COA ISOMERASE 1); delta3,5-delta2,4-dienoyl-CoA isomerase/ enoyl-CoA hydratase  note DELTA(3,5),DELTA(2,4)-DIENOYL-COA ISOMERASE 1 (ATDCI1); FUNCTIONS IN: enoyl-CoA hydratase activity, delta3,5-delta2,4-dienoyl-CoA isomerase activity; INVOLVED IN: fatty acid catabolic process, seed germination, metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Enoyl-CoA hydratase/isomerase, conserved site (InterPro:IPR018376), Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: enoyl-CoA hydratase, putative (TAIR:AT4G16800.1); Has 26321 Blast hits to 26320 proteins in 1295 species: Archae - 197; Bacteria - 14340; Metazoa - 1478; Fungi - 573; Plants - 351; Viruses - 0; Other Eukaryotes - 9382 (source: NCBI BLink).  protein_id AT5G43280.1p  transcript_id AT5G43280.1  protein_id AT5G43280.1p  transcript_id AT5G43280.1  
At5g43285	chr5:017370809	0.0	C/17370809-17370857,17370475-17370710	AT5G43285.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G43518.1); Has 17 Blast hits to 17 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G43285.1p  transcript_id AT5G43285.1  protein_id AT5G43285.1p  transcript_id AT5G43285.1  
At5g43290	chr5:017372827	0.0	C/17372827-17373083,17372572-17372715,17371987-17372410	AT5G43290.1  CDS  gene_syn ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 49, ATWRKY49, MNL12.11, MNL12_11, WRKY DNA-BINDING PROTEIN 49, WRKY49  gene WRKY49  function member of WRKY Transcription Factor; Group II-c  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY49; transcription factor  note WRKY49; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY57; transcription factor (TAIR:AT1G69310.2); Has 1997 Blast hits to 1716 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1985; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT5G43290.1p  transcript_id AT5G43290.1  protein_id AT5G43290.1p  transcript_id AT5G43290.1  
At5g43300	chr5:017379016	0.0	C/17379016-17379070,17378735-17378925,17378087-17378146,17377722-17378000,17377556-17377651,17377270-17377466,17376946-17377180	AT5G43300.1  CDS  gene_syn MNL12.12, MNL12_12  go_process glycerol metabolic process|GO:0006071||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function phosphoric diester hydrolase activity|GO:0008081||IEA  go_function glycerophosphodiester phosphodiesterase activity|GO:0008889||IEA  go_component cellular_component|GO:0005575||ND  go_process glycerol metabolic process|GO:0006071||ISS  go_function glycerophosphodiester phosphodiesterase activity|GO:0008889||ISS  product glycerophosphodiester phosphodiesterase/ phosphoric diester hydrolase  note glycerophosphodiester phosphodiesterase/ phosphoric diester hydrolase; FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: SRG3 (senescence-related gene 3); glycerophosphodiester phosphodiesterase/ phosphoric diester hydrolase (TAIR:AT3G02040.1); Has 704 Blast hits to 666 proteins in 212 species: Archae - 15; Bacteria - 168; Metazoa - 221; Fungi - 114; Plants - 54; Viruses - 2; Other Eukaryotes - 130 (source: NCBI BLink).  protein_id AT5G43300.1p  transcript_id AT5G43300.1  protein_id AT5G43300.1p  transcript_id AT5G43300.1  
At5g43310	chr5:017385329	0.0	C/17385329-17385387,17384403-17384582,17384081-17384319,17383842-17383894,17383437-17383741,17383131-17383303,17381762-17383017,17380699-17381619,17380211-17380616,17379891-17379956,17379735-17379790	AT5G43310.1  CDS  gene_syn MNL12.14, MNL12_14  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  product COP1-interacting protein-related  note COP1-interacting protein-related; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR class), putative (TAIR:AT1G61100.1); Has 3266 Blast hits to 2246 proteins in 226 species: Archae - 0; Bacteria - 147; Metazoa - 1423; Fungi - 288; Plants - 159; Viruses - 12; Other Eukaryotes - 1237 (source: NCBI BLink).  protein_id AT5G43310.1p  transcript_id AT5G43310.1  protein_id AT5G43310.1p  transcript_id AT5G43310.1  
At5g43320	chr5:017388866	0.0	C/17388866-17388941,17388750-17388790,17388587-17388656,17388363-17388511,17388195-17388290,17387983-17388053,17387815-17387876,17387659-17387722,17387486-17387570,17387262-17387388,17387083-17387168,17386923-17386986,17386425-17386576,17386043-17386342	AT5G43320.1  CDS  gene_syn Casein Kinase I-like 8, MWF20.1, MWF20_1, ckl8  gene ckl8  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product ckl8 (Casein Kinase I-like 8); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note Casein Kinase I-like 8 (ckl8); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CKL13 (CASEIN KINASE LIKE 13); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT1G04440.1); Has 43437 Blast hits to 38899 proteins in 1316 species: Archae - 11; Bacteria - 5088; Metazoa - 16614; Fungi - 3821; Plants - 5122; Viruses - 277; Other Eukaryotes - 12504 (source: NCBI BLink).  protein_id AT5G43320.1p  transcript_id AT5G43320.1  protein_id AT5G43320.1p  transcript_id AT5G43320.1  
At5g43330	chr5:017390552	0.0	W/17390552-17390594,17390918-17391076,17391176-17391351,17391463-17391740,17391826-17391961,17392050-17392161,17392355-17392449	AT5G43330.1  CDS  gene_syn MWF20.2, MWF20_2  go_component plasma membrane|GO:0005886|17644812|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process glycolysis|GO:0006096||IEA  go_process malate metabolic process|GO:0006108||IEA  go_process metabolic process|GO:0008152||IEA  go_process cellular carbohydrate metabolic process|GO:0044262||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function malate dehydrogenase activity|GO:0016615||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_function L-malate dehydrogenase activity|GO:0030060||IEA  go_function malate dehydrogenase activity|GO:0016615||ISS  product malate dehydrogenase, cytosolic, putative  note malate dehydrogenase, cytosolic, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: cellular carbohydrate metabolic process, glycolysis, malate metabolic process, carbohydrate metabolic process, metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Malate dehydrogenase, NAD-dependent, cytosolic (InterPro:IPR011274), Lactate/malate dehydrogenase (InterPro:IPR001236), Malate dehydrogenase, NAD or NADP (InterPro:IPR010945), NAD(P)-binding (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: malate dehydrogenase, cytosolic, putative (TAIR:AT1G04410.1); Has 8255 Blast hits to 8253 proteins in 1762 species: Archae - 116; Bacteria - 4254; Metazoa - 1034; Fungi - 184; Plants - 466; Viruses - 0; Other Eukaryotes - 2201 (source: NCBI BLink).  protein_id AT5G43330.1p  transcript_id AT5G43330.1  protein_id AT5G43330.1p  transcript_id AT5G43330.1  
At5g43340	chr5:017393598	0.0	C/17393598-17395148	AT5G43340.1  CDS  gene_syn MWF20.3, MWF20_3, PHOSPHATE TRANSPORTER 6, PHT6  gene PHT6  function phosphate transporter  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process phosphate transport|GO:0006817||IEA  go_component membrane|GO:0016020||ISS  go_function inorganic phosphate transmembrane transporter activity|GO:0005315|9872450|ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function phosphate transmembrane transporter activity|GO:0015114||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product PHT6; carbohydrate transmembrane transporter/ inorganic phosphate transmembrane transporter/ phosphate transmembrane transporter/ sugar:hydrogen symporter  note PHT6; FUNCTIONS IN: phosphate transmembrane transporter activity, carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, inorganic phosphate transmembrane transporter activity; INVOLVED IN: transport, phosphate transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Phosphate permease (InterPro:IPR004738), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: carbohydrate transmembrane transporter/ phosphate transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT3G54700.1); Has 20276 Blast hits to 20197 proteins in 1227 species: Archae - 321; Bacteria - 12047; Metazoa - 2747; Fungi - 3093; Plants - 1283; Viruses - 0; Other Eukaryotes - 785 (source: NCBI BLink).  protein_id AT5G43340.1p  transcript_id AT5G43340.1  protein_id AT5G43340.1p  transcript_id AT5G43340.1  
At5g43350	chr5:017401243	0.0	C/17401243-17401643,17399918-17401091	AT5G43350.1  CDS  gene_syn ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 1, ATPT1, MWF20.4, MWF20_4, PHOSPHATE TRANSPORTER, PHOSPHATE TRANSPORTER 1;1, PHT1;1  gene PHT1;1  function Encodes an inorganic phosphate transporter. Mutants display enhanced arsenic accumulation.  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020||ISS  go_process phosphate transport|GO:0006817|9192698|IDA  go_process cellular response to phosphate starvation|GO:0016036|17400898|IEP  go_function inorganic phosphate transmembrane transporter activity|GO:0005315|9192698|IDA  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function phosphate transmembrane transporter activity|GO:0015114|17400898|IMP  go_function phosphate transmembrane transporter activity|GO:0015114||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product PHT1;1 (PHOSPHATE TRANSPORTER 1;1); carbohydrate transmembrane transporter/ inorganic phosphate transmembrane transporter/ phosphate transmembrane transporter/ sugar:hydrogen symporter  note PHOSPHATE TRANSPORTER 1;1 (PHT1;1); FUNCTIONS IN: phosphate transmembrane transporter activity, carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, inorganic phosphate transmembrane transporter activity; INVOLVED IN: cellular response to phosphate starvation, phosphate transport; LOCATED IN: plasma membrane, membrane; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Phosphate permease (InterPro:IPR004738), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1); carbohydrate transmembrane transporter/ inorganic phosphate transmembrane transporter/ phosphate transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT5G43370.1); Has 16939 Blast hits to 16825 proteins in 1206 species: Archae - 289; Bacteria - 11714; Metazoa - 1124; Fungi - 2240; Plants - 888; Viruses - 0; Other Eukaryotes - 684 (source: NCBI BLink).  protein_id AT5G43350.1p  transcript_id AT5G43350.1  protein_id AT5G43350.1p  transcript_id AT5G43350.1  
At5g43360	chr5:017409524	0.0	W/17409524-17409924,17410050-17411214	AT5G43360.1  CDS  gene_syn ATPT4, MWF20.5, MWF20_5, PHOSPHATE TRANSPORTER 3, PHT3  gene PHT3  function phosphate transporter  go_component plasma membrane|GO:0005886|15060130|IDA  go_process transport|GO:0006810||IEA  go_process phosphate transport|GO:0006817||IEA  go_component membrane|GO:0016020||ISS  go_function inorganic phosphate transmembrane transporter activity|GO:0005315|9872450|ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function phosphate transmembrane transporter activity|GO:0015114||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product PHT3 (PHOSPHATE TRANSPORTER 3); carbohydrate transmembrane transporter/ inorganic phosphate transmembrane transporter/ phosphate transmembrane transporter/ sugar:hydrogen symporter  note PHOSPHATE TRANSPORTER 3 (PHT3); FUNCTIONS IN: phosphate transmembrane transporter activity, carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, inorganic phosphate transmembrane transporter activity; INVOLVED IN: transport, phosphate transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Phosphate permease (InterPro:IPR004738), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: PHT1;1 (PHOSPHATE TRANSPORTER 1;1); carbohydrate transmembrane transporter/ inorganic phosphate transmembrane transporter/ phosphate transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT5G43350.1); Has 16862 Blast hits to 16753 proteins in 1208 species: Archae - 291; Bacteria - 11609; Metazoa - 1071; Fungi - 2290; Plants - 901; Viruses - 0; Other Eukaryotes - 700 (source: NCBI BLink).  protein_id AT5G43360.1p  transcript_id AT5G43360.1  protein_id AT5G43360.1p  transcript_id AT5G43360.1  
At5g43370	chr5:017416074	0.0	W/17416074-17416474,17416625-17417798	AT5G43370.1  CDS  gene_syn APT1, ARABIDOPSIS PHOSPHATE TRANSPORTER 1, MWF20.6, MWF20_6, PHOSPHATE TRANSPORTER 2, PHT1;2, PHT2  gene APT1  function phosphate transporter  go_component membrane|GO:0016020|17432890|IDA  go_component membrane|GO:0016020||ISS  go_process phosphate transport|GO:0006817|9872450|TAS  go_function inorganic phosphate transmembrane transporter activity|GO:0005315|9872450|ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function phosphate transmembrane transporter activity|GO:0015114||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1); carbohydrate transmembrane transporter/ inorganic phosphate transmembrane transporter/ phosphate transmembrane transporter/ sugar:hydrogen symporter  note ARABIDOPSIS PHOSPHATE TRANSPORTER 1 (APT1); FUNCTIONS IN: phosphate transmembrane transporter activity, carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, inorganic phosphate transmembrane transporter activity; INVOLVED IN: phosphate transport; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Phosphate permease (InterPro:IPR004738), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: PHT1;1 (PHOSPHATE TRANSPORTER 1;1); carbohydrate transmembrane transporter/ inorganic phosphate transmembrane transporter/ phosphate transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT5G43350.1); Has 16633 Blast hits to 16550 proteins in 1196 species: Archae - 295; Bacteria - 11447; Metazoa - 1099; Fungi - 2232; Plants - 884; Viruses - 0; Other Eukaryotes - 676 (source: NCBI BLink).  protein_id AT5G43370.1p  transcript_id AT5G43370.1  protein_id AT5G43370.1p  transcript_id AT5G43370.1  
At5g43380	chr5:017421652	0.0	C/17421652-17421826,17421010-17421569,17420683-17420931	AT5G43380.2  CDS  gene_syn TOPP6, TYPE ONE SERINE/THREONINE PROTEIN PHOSPHATASE 6  gene TOPP6  function encodes a type I serine/threonine protein phosphatase expressed in expressed in roots, rosettes and flowers.  go_component cellular_component|GO:0005575||ND  go_process protein amino acid dephosphorylation|GO:0006470|9617814|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722|9617814|ISS  product TOPP6; protein serine/threonine phosphatase  note TOPP6; FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: TOPP4; protein serine/threonine phosphatase (TAIR:AT2G39840.1); Has 5511 Blast hits to 5379 proteins in 434 species: Archae - 49; Bacteria - 329; Metazoa - 2056; Fungi - 934; Plants - 610; Viruses - 14; Other Eukaryotes - 1519 (source: NCBI BLink).  protein_id AT5G43380.2p  transcript_id AT5G43380.2  protein_id AT5G43380.2p  transcript_id AT5G43380.2  
At5g43380	chr5:017421652	0.0	C/17421652-17421826,17421010-17421569,17420710-17420931,17419930-17419944	AT5G43380.3  CDS  gene_syn TOPP6, TYPE ONE SERINE/THREONINE PROTEIN PHOSPHATASE 6  gene TOPP6  function encodes a type I serine/threonine protein phosphatase expressed in expressed in roots, rosettes and flowers.  go_component cellular_component|GO:0005575||ND  go_process protein amino acid dephosphorylation|GO:0006470|9617814|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722|9617814|ISS  product TOPP6; protein serine/threonine phosphatase  note TOPP6; FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: TOPP4; protein serine/threonine phosphatase (TAIR:AT2G39840.1); Has 5511 Blast hits to 5379 proteins in 434 species: Archae - 49; Bacteria - 329; Metazoa - 2056; Fungi - 934; Plants - 610; Viruses - 14; Other Eukaryotes - 1519 (source: NCBI BLink).  protein_id AT5G43380.3p  transcript_id AT5G43380.3  protein_id AT5G43380.3p  transcript_id AT5G43380.3  
At5g43380	chr5:017421652	0.0	C/17421652-17421826,17421010-17421569,17420710-17420931,17420297-17420335	AT5G43380.1  CDS  gene_syn TOPP6, TYPE ONE SERINE/THREONINE PROTEIN PHOSPHATASE 6  gene TOPP6  function encodes a type I serine/threonine protein phosphatase expressed in expressed in roots, rosettes and flowers.  go_component cellular_component|GO:0005575||ND  go_process protein amino acid dephosphorylation|GO:0006470|9617814|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722|9617814|ISS  product TOPP6; protein serine/threonine phosphatase  note TOPP6; FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: TOPP4; protein serine/threonine phosphatase (TAIR:AT2G39840.1); Has 5511 Blast hits to 5379 proteins in 434 species: Archae - 49; Bacteria - 329; Metazoa - 2056; Fungi - 934; Plants - 610; Viruses - 14; Other Eukaryotes - 1519 (source: NCBI BLink).  protein_id AT5G43380.1p  transcript_id AT5G43380.1  protein_id AT5G43380.1p  transcript_id AT5G43380.1  
At5g43390	chr5:017422940	0.0	C/17422940-17424871	AT5G43390.1  CDS  gene_syn MWF20.8, MWF20_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Uncharacterized conserved protein UCP015417, vWA (InterPro:IPR011205), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G43400.1); Has 252 Blast hits to 234 proteins in 28 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 19; Plants - 47; Viruses - 15; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT5G43390.1p  transcript_id AT5G43390.1  protein_id AT5G43390.1p  transcript_id AT5G43390.1  
At5g43400	chr5:017426182	0.0	C/17426182-17428149	AT5G43400.1  CDS  gene_syn MWF20.9, MWF20_9  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Uncharacterized conserved protein UCP015417, vWA (InterPro:IPR011205); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G43390.1); Has 260 Blast hits to 238 proteins in 28 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 23; Plants - 46; Viruses - 15; Other Eukaryotes - 164 (source: NCBI BLink).  protein_id AT5G43400.1p  transcript_id AT5G43400.1  protein_id AT5G43400.1p  transcript_id AT5G43400.1  
At5g43401	chr5:017429034	0.0	C/17429034-17429097,17428582-17428787	AT5G43401.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G45093.1); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G43401.1p  transcript_id AT5G43401.1  protein_id AT5G43401.1p  transcript_id AT5G43401.1  
At5g43403	chr5:017430539	0.0	C/17430539-17431765	AT5G43403.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G43403.1  
At5g43405	chr5:017432645	0.0	W/17432645-17433009	AT5G43405.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G43940.1)  
At5g43410	chr5:017435010	0.0	C/17435010-17435405	AT5G43410.1  CDS  gene_syn MWF20.11, MWF20_11  function encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product ethylene-responsive factor, putative  note ethylene-responsive factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ATERF14 (Ethylene-responsive element binding factor 14); DNA binding / transcription factor (TAIR:AT1G04370.1); Has 3961 Blast hits to 3722 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3942; Viruses - 2; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT5G43410.1p  transcript_id AT5G43410.1  protein_id AT5G43410.1p  transcript_id AT5G43410.1  
At5g43415	chr5:017440088	0.0	W/17440088-17445889	AT5G43415.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 6.5e-36 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)  
At5g43420	chr5:017451790	0.0	W/17451790-17452917	AT5G43420.1  CDS  gene_syn MWF20.13, MWF20_13  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G04360.1); Has 6835 Blast hits to 6814 proteins in 234 species: Archae - 0; Bacteria - 0; Metazoa - 2211; Fungi - 505; Plants - 2832; Viruses - 51; Other Eukaryotes - 1236 (source: NCBI BLink).  protein_id AT5G43420.1p  transcript_id AT5G43420.1  protein_id AT5G43420.1p  transcript_id AT5G43420.1  
At5g43430	chr5:017453656	0.0	W/17453656-17453724,17453804-17454088,17454387-17454467,17454571-17454665,17454866-17454872	AT5G43430.2  CDS  gene_syn ETFBETA, MWF20.14, MWF20_14  gene ETFBETA  function Encodes the electron transfer flavoprotein ETF beta, a putative subunit of the mitochondrial electron transfer flavoprotein complex (ETF alpha is At1g50940) in Arabidopsis. Mutations of the ETF beta gene result in accelerated senescence and early death compared to wild-type during extended darkness. Also involved in the catabolism of leucine and chlorophyll degradation pathway activated during darkness-induced carbohydrate deprivation.  go_function electron carrier activity|GO:0009055||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|14764908|IDA  go_process leucine catabolic process|GO:0006552|16923016|IMP  go_process chlorophyll catabolic process|GO:0015996|16923016|IMP  product ETFBETA; electron carrier  note ETFBETA; FUNCTIONS IN: electron carrier activity; INVOLVED IN: chlorophyll catabolic process, leucine catabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Electron transfer flavoprotein, beta subunit (InterPro:IPR012255), Electron transfer flavoprotein, beta-subunit, core (InterPro:IPR000049), Electron transfer flavoprotein, alpha/beta-subunit, N-terminal (InterPro:IPR014730); Has 4538 Blast hits to 4538 proteins in 927 species: Archae - 78; Bacteria - 2204; Metazoa - 127; Fungi - 80; Plants - 22; Viruses - 0; Other Eukaryotes - 2027 (source: NCBI BLink).  protein_id AT5G43430.2p  transcript_id AT5G43430.2  protein_id AT5G43430.2p  transcript_id AT5G43430.2  
At5g43430	chr5:017453656	0.0	W/17453656-17453724,17453804-17454088,17454387-17454467,17454571-17454665,17454886-17455111	AT5G43430.1  CDS  gene_syn ETFBETA, MWF20.14, MWF20_14  gene ETFBETA  function Encodes the electron transfer flavoprotein ETF beta, a putative subunit of the mitochondrial electron transfer flavoprotein complex (ETF alpha is At1g50940) in Arabidopsis. Mutations of the ETF beta gene result in accelerated senescence and early death compared to wild-type during extended darkness. Also involved in the catabolism of leucine and chlorophyll degradation pathway activated during darkness-induced carbohydrate deprivation.  go_function electron carrier activity|GO:0009055||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|14764908|IDA  go_process leucine catabolic process|GO:0006552|16923016|IMP  go_process chlorophyll catabolic process|GO:0015996|16923016|IMP  product ETFBETA; electron carrier  note ETFBETA; FUNCTIONS IN: electron carrier activity; INVOLVED IN: chlorophyll catabolic process, leucine catabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Electron transfer flavoprotein, beta subunit (InterPro:IPR012255), Electron transfer flavoprotein, alpha/beta-subunit, N-terminal (InterPro:IPR014730), Electron transfer flavoprotein, beta-subunit, core (InterPro:IPR000049); Has 5019 Blast hits to 5019 proteins in 936 species: Archae - 80; Bacteria - 2365; Metazoa - 130; Fungi - 80; Plants - 22; Viruses - 0; Other Eukaryotes - 2342 (source: NCBI BLink).  protein_id AT5G43430.1p  transcript_id AT5G43430.1  protein_id AT5G43430.1p  transcript_id AT5G43430.1  
At5g43430	chr5:017453831	0.0	W/17453831-17454088,17454387-17454467,17454571-17454665,17454886-17455111	AT5G43430.3  CDS  gene_syn ETFBETA, MWF20.14, MWF20_14  gene ETFBETA  function Encodes the electron transfer flavoprotein ETF beta, a putative subunit of the mitochondrial electron transfer flavoprotein complex (ETF alpha is At1g50940) in Arabidopsis. Mutations of the ETF beta gene result in accelerated senescence and early death compared to wild-type during extended darkness. Also involved in the catabolism of leucine and chlorophyll degradation pathway activated during darkness-induced carbohydrate deprivation.  go_function electron carrier activity|GO:0009055||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|14764908|IDA  go_process leucine catabolic process|GO:0006552|16923016|IMP  go_process chlorophyll catabolic process|GO:0015996|16923016|IMP  product ETFBETA; electron carrier  note ETFBETA; FUNCTIONS IN: electron carrier activity; INVOLVED IN: chlorophyll catabolic process, leucine catabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Electron transfer flavoprotein, beta-subunit, core (InterPro:IPR000049), Electron transfer flavoprotein, beta subunit (InterPro:IPR012255), Electron transfer flavoprotein, alpha/beta-subunit, N-terminal (InterPro:IPR014730); Has 4905 Blast hits to 4905 proteins in 936 species: Archae - 80; Bacteria - 2359; Metazoa - 130; Fungi - 80; Plants - 22; Viruses - 0; Other Eukaryotes - 2234 (source: NCBI BLink).  protein_id AT5G43430.3p  transcript_id AT5G43430.3  protein_id AT5G43430.3p  transcript_id AT5G43430.3  
At5g43440	chr5:017456085	0.0	C/17456085-17456608,17455660-17456008	AT5G43440.2  CDS  gene_syn MWF20.15, MWF20_15  function encodes a protein whose sequence is similar to ACC oxidase  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function 1-aminocyclopropane-1-carboxylate oxidase activity|GO:0009815|7579161|ISS  product 2-oxoglutarate-dependent dioxygenase, putative  note 2-oxoglutarate-dependent dioxygenase, putative; FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate oxidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase, putative (TAIR:AT5G43450.1); Has 4798 Blast hits to 4788 proteins in 614 species: Archae - 0; Bacteria - 569; Metazoa - 61; Fungi - 412; Plants - 2964; Viruses - 0; Other Eukaryotes - 792 (source: NCBI BLink).  protein_id AT5G43440.2p  transcript_id AT5G43440.2  protein_id AT5G43440.2p  transcript_id AT5G43440.2  
At5g43440	chr5:017456085	0.0	C/17456085-17456608,17455687-17456008,17455356-17455607	AT5G43440.1  CDS  gene_syn MWF20.15, MWF20_15  function encodes a protein whose sequence is similar to ACC oxidase  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function 1-aminocyclopropane-1-carboxylate oxidase activity|GO:0009815|7579161|ISS  product 2-oxoglutarate-dependent dioxygenase, putative  note 2-oxoglutarate-dependent dioxygenase, putative; FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate oxidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase, putative (TAIR:AT5G43450.1); Has 5616 Blast hits to 5603 proteins in 686 species: Archae - 0; Bacteria - 702; Metazoa - 108; Fungi - 545; Plants - 3062; Viruses - 0; Other Eukaryotes - 1199 (source: NCBI BLink).  protein_id AT5G43440.1p  transcript_id AT5G43440.1  protein_id AT5G43440.1p  transcript_id AT5G43440.1  
At5g43450	chr5:017458200	0.0	C/17458200-17458714,17457650-17457971,17457321-17457572	AT5G43450.1  CDS  gene_syn MWF20.16, MWF20_16  function encodes a protein whose sequence is similar to ACC oxidase  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function 1-aminocyclopropane-1-carboxylate oxidase activity|GO:0009815|7579161|ISS  product 2-oxoglutarate-dependent dioxygenase, putative  note 2-oxoglutarate-dependent dioxygenase, putative; FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate oxidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase, putative (TAIR:AT5G43440.1); Has 5729 Blast hits to 5714 proteins in 691 species: Archae - 0; Bacteria - 720; Metazoa - 121; Fungi - 584; Plants - 3067; Viruses - 0; Other Eukaryotes - 1237 (source: NCBI BLink).  protein_id AT5G43450.1p  transcript_id AT5G43450.1  protein_id AT5G43450.1p  transcript_id AT5G43450.1  
At5g43455	chr5:017459175	0.0	C/17459175-17459247	AT5G43455.1  tRNA  gene_syn 67775.TRNA-ALA-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: AGC)  transcript_id AT5G43455.1  
At5g43460	chr5:017460007	0.0	W/17460007-17460074,17460769-17460871,17460957-17461046,17461139-17461237,17461388-17461492	AT5G43460.1  CDS  gene_syn MWF20.18, MWF20_18  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product lesion inducing protein-related  note lesion inducing protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HR-like lesion-inducer (InterPro:IPR008637); BEST Arabidopsis thaliana protein match is: lesion inducing protein-related (TAIR:AT1G04340.1); Has 89 Blast hits to 89 proteins in 18 species: Archae - 0; Bacteria - 7; Metazoa - 0; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G43460.1p  transcript_id AT5G43460.1  protein_id AT5G43460.1p  transcript_id AT5G43460.1  
At5g43470	chr5:017465782	0.0	C/17465782-17466658,17465506-17465652,17463130-17464832	AT5G43470.1  CDS  gene_syn DISEASE RESISTANCE PROTEIN RPP8, HRT, HYPERSENSITIVE RESPONSE TO TCV, MWF20.19, MWF20_19, RCY1, RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV(Y) 1, RPP8  gene RPP8  function Confers resistance to Peronospora parasitica. In arabidopsis ecotype Dijon-17, HRT-mediated signaling is dependent on light for the induction of hypersensitive response and resistance to turnip crinkle virus.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process defense response|GO:0006952|9811794|TAS  go_process defense response|GO:0006952||ISS  go_process response to light stimulus|GO:0009416|16412080|IMP  go_process plant-type hypersensitive response|GO:0009626|9680977|IMP  go_process defense response to virus|GO:0051607|16412080|IMP  go_process response to other organism|GO:0051707|9811794|IMP  go_function nucleotide binding|GO:0000166|10571892|ISS  product RPP8 (RECOGNITION OF PERONOSPORA PARASITICA 8); nucleotide binding  note RECOGNITION OF PERONOSPORA PARASITICA 8 (RPP8); FUNCTIONS IN: nucleotide binding; INVOLVED IN: defense response to virus, response to other organism, response to light stimulus, plant-type hypersensitive response, defense response; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT5G48620.1); Has 9532 Blast hits to 9104 proteins in 361 species: Archae - 9; Bacteria - 326; Metazoa - 295; Fungi - 25; Plants - 8797; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT5G43470.1p  transcript_id AT5G43470.1  protein_id AT5G43470.1p  transcript_id AT5G43470.1  
At5g43470	chr5:017465782	0.0	C/17465782-17466658,17465506-17465652,17463130-17464832	AT5G43470.2  CDS  gene_syn DISEASE RESISTANCE PROTEIN RPP8, HRT, HYPERSENSITIVE RESPONSE TO TCV, MWF20.19, MWF20_19, RCY1, RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV(Y) 1, RPP8  gene RPP8  function Confers resistance to Peronospora parasitica. In arabidopsis ecotype Dijon-17, HRT-mediated signaling is dependent on light for the induction of hypersensitive response and resistance to turnip crinkle virus.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process defense response|GO:0006952|9811794|TAS  go_process defense response|GO:0006952||ISS  go_process response to light stimulus|GO:0009416|16412080|IMP  go_process plant-type hypersensitive response|GO:0009626|9680977|IMP  go_process defense response to virus|GO:0051607|16412080|IMP  go_process response to other organism|GO:0051707|9811794|IMP  go_function nucleotide binding|GO:0000166|10571892|ISS  product RPP8 (RECOGNITION OF PERONOSPORA PARASITICA 8); nucleotide binding  note RECOGNITION OF PERONOSPORA PARASITICA 8 (RPP8); FUNCTIONS IN: nucleotide binding; INVOLVED IN: defense response to virus, response to other organism, response to light stimulus, plant-type hypersensitive response, defense response; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT5G48620.1); Has 9532 Blast hits to 9104 proteins in 361 species: Archae - 9; Bacteria - 326; Metazoa - 295; Fungi - 25; Plants - 8797; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT5G43470.2p  transcript_id AT5G43470.2  protein_id AT5G43470.2p  transcript_id AT5G43470.2  
At5g43480	chr5:017467398	0.0	C/17467398-17467643	AT5G43480.1  CDS  gene_syn MWF20.20, MWF20_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G43480.1p  transcript_id AT5G43480.1  protein_id AT5G43480.1p  transcript_id AT5G43480.1  
At5g43490	chr5:017468471	0.0	C/17468471-17468866	AT5G43490.1  CDS  gene_syn MWF20.21, MWF20_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 14 Blast hits to 14 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G43490.1p  transcript_id AT5G43490.1  protein_id AT5G43490.1p  transcript_id AT5G43490.1  
At5g43500	chr5:017469991	0.0	W/17469991-17469993,17470077-17470149,17470245-17470354,17470433-17470492,17470582-17470647,17470795-17470903,17471085-17471293,17471382-17471502,17471607-17471761,17471838-17471888,17471978-17472109,17472185-17472274,17472361-17472431,17472512-17472681,17472768-17472811,17472945-17472994,17473110-17473206,17473286-17473429	AT5G43500.2  CDS  gene_syn ACTIN-RELATED PROTEIN 9, ATARP9, MWF20.22, MWF20_22  gene ATARP9  function encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. Member of nuclear ARP family of genes.  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_function DNA binding|GO:0003677||IEA  go_function protein binding|GO:0005515||IEA  product ATARP9 (ACTIN-RELATED PROTEIN 9); DNA binding / protein binding  note ACTIN-RELATED PROTEIN 9 (ATARP9); FUNCTIONS IN: protein binding, DNA binding; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transition protein 1 (InterPro:IPR001319), Actin/actin-like (InterPro:IPR004000); Has 3818 Blast hits to 3716 proteins in 897 species: Archae - 0; Bacteria - 4; Metazoa - 2095; Fungi - 635; Plants - 321; Viruses - 0; Other Eukaryotes - 763 (source: NCBI BLink).  protein_id AT5G43500.2p  transcript_id AT5G43500.2  protein_id AT5G43500.2p  transcript_id AT5G43500.2  
At5g43500	chr5:017470038	0.0	W/17470038-17470149,17470245-17470354,17470433-17470492,17470582-17470647,17470795-17470903,17471085-17471293,17471382-17471502,17471607-17471761,17471838-17471888,17471978-17472109,17472185-17472274,17472361-17472431,17472512-17472681,17472768-17472811,17472945-17472994,17473110-17473206,17473286-17473429	AT5G43500.1  CDS  gene_syn ACTIN-RELATED PROTEIN 9, ATARP9, MWF20.22, MWF20_22  gene ATARP9  function encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. Member of nuclear ARP family of genes.  go_function protein binding|GO:0005515||IEA  product ATARP9 (ACTIN-RELATED PROTEIN 9); protein binding  note ACTIN-RELATED PROTEIN 9 (ATARP9); FUNCTIONS IN: protein binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000); Has 3820 Blast hits to 3718 proteins in 898 species: Archae - 0; Bacteria - 4; Metazoa - 2095; Fungi - 636; Plants - 322; Viruses - 0; Other Eukaryotes - 763 (source: NCBI BLink).  protein_id AT5G43500.1p  transcript_id AT5G43500.1  protein_id AT5G43500.1p  transcript_id AT5G43500.1  
At5g43510	chr5:017474111	0.0	W/17474111-17474159,17474255-17474478	AT5G43510.2  CDS  function Encodes a defensin-like (DEFL) family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G43525.1); Has 16 Blast hits to 16 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G43510.2p  transcript_id AT5G43510.2  protein_id AT5G43510.2p  transcript_id AT5G43510.2  
At5g43513	chr5:017478020	0.0	W/17478020-17478071,17478167-17478390	AT5G43513.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G43518.1); Has 16 Blast hits to 16 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G43513.1p  transcript_id AT5G43513.1  protein_id AT5G43513.1p  transcript_id AT5G43513.1  
At5g43516	chr5:017482275	0.0	W/17482275-17482644	AT5G43516.1  pseudogenic_transcript  pseudo  function pseudogene of a defensin-like (DEFL) family protein.  
At5g43518	chr5:017484434	0.0	W/17484434-17484482,17484578-17484801	AT5G43518.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G43510.2); Has 16 Blast hits to 16 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G43518.1p  transcript_id AT5G43518.1  protein_id AT5G43518.1p  transcript_id AT5G43518.1  
At5g43520	chr5:017485439	0.0	C/17485439-17486191	AT5G43520.1  CDS  gene_syn K9D7.1, K9D7_1  product DC1 domain-containing protein  note DC1 domain-containing protein; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT2G44380.1); Has 1552 Blast hits to 550 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 4; Plants - 1536; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G43520.1p  transcript_id AT5G43520.1  protein_id AT5G43520.1p  transcript_id AT5G43520.1  
At5g43525	chr5:017488149	0.0	W/17488149-17488197,17488293-17488516	AT5G43525.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G43510.2); Has 14 Blast hits to 14 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G43525.1p  transcript_id AT5G43525.1  protein_id AT5G43525.1p  transcript_id AT5G43525.1  
At5g43530	chr5:017489327	0.0	W/17489327-17490664,17490840-17490973,17491048-17491183,17491282-17491335,17491460-17491609,17491697-17491848,17491937-17492021,17492132-17492350,17492432-17492575,17492668-17492820,17492895-17492962,17493056-17493178,17493271-17493370,17493500-17493612,17493690-17494260,17494353-17494424,17494511-17494609,17494708-17494830	AT5G43530.1  CDS  gene_syn K9D7.2, K9D7_2  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides|GO:0016818||IEA  go_function DNA binding|GO:0003677||ISS  go_function helicase activity|GO:0004386||ISS  go_function protein binding|GO:0005515||ISS  go_function ATP binding|GO:0005524||ISS  go_function zinc ion binding|GO:0008270||ISS  product SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein  note SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; FUNCTIONS IN: in 8 functions; LOCATED IN: chloroplast envelope; EXPRESSED IN: shoot apex, embryo, male gametophyte, flower, seed; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), SNF2-related (InterPro:IPR000330), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), HIP116, Rad5p N-terminal (InterPro:IPR014905); BEST Arabidopsis thaliana protein match is: RAD5; ATP binding / ATP-dependent helicase/ DNA binding / helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding / protein binding / zinc ion binding (TAIR:AT5G22750.1); Has 18727 Blast hits to 12698 proteins in 961 species: Archae - 82; Bacteria - 3720; Metazoa - 6642; Fungi - 3332; Plants - 1289; Viruses - 123; Other Eukaryotes - 3539 (source: NCBI BLink).  protein_id AT5G43530.1p  transcript_id AT5G43530.1  protein_id AT5G43530.1p  transcript_id AT5G43530.1  
At5g43535	chr5:017495541	0.0	C/17495541-17495611	AT5G43535.1  tRNA  gene_syn 67776.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: GCC)  transcript_id AT5G43535.1  
At5g43540	chr5:017496993	0.0	W/17496993-17497406	AT5G43540.1  CDS  gene_syn K9D7.4, K9D7_4  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT3G53820.1); Has 401 Blast hits to 399 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 0; Plants - 380; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G43540.1p  transcript_id AT5G43540.1  protein_id AT5G43540.1p  transcript_id AT5G43540.1  
At5g43550	chr5:017497892	0.0	W/17497892-17498263	AT5G43550.1  CDS  gene_syn K9D7.5, K9D7_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated type 3 (InterPro:IPR013187); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22791.1); Has 175 Blast hits to 173 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 175; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G43550.1p  transcript_id AT5G43550.1  protein_id AT5G43550.1p  transcript_id AT5G43550.1  
At5g43560	chr5:017501043	0.0	W/17501043-17501335,17501414-17501502,17501582-17501650,17501722-17501854,17502041-17502199,17502390-17502738,17502866-17502978,17503230-17503380,17503477-17503934,17504013-17504208,17504369-17505526	AT5G43560.1  CDS  gene_syn K9D7.6, K9D7_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G04300.1); Has 12250 Blast hits to 8238 proteins in 646 species: Archae - 36; Bacteria - 941; Metazoa - 4927; Fungi - 1587; Plants - 727; Viruses - 73; Other Eukaryotes - 3959 (source: NCBI BLink).  protein_id AT5G43560.1p  transcript_id AT5G43560.1  protein_id AT5G43560.1p  transcript_id AT5G43560.1  
At5g43560	chr5:017501043	0.0	W/17501043-17501335,17501414-17501502,17501582-17501650,17501722-17501854,17502041-17502199,17502390-17502738,17502866-17502978,17503230-17503380,17503477-17503934,17504013-17504208,17504369-17505526	AT5G43560.2  CDS  gene_syn K9D7.6, K9D7_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G04300.1); Has 12250 Blast hits to 8238 proteins in 646 species: Archae - 36; Bacteria - 941; Metazoa - 4927; Fungi - 1587; Plants - 727; Viruses - 73; Other Eukaryotes - 3959 (source: NCBI BLink).  protein_id AT5G43560.2p  transcript_id AT5G43560.2  protein_id AT5G43560.2p  transcript_id AT5G43560.2  
At5g43570	chr5:017506454	0.0	W/17506454-17506472,17507164-17507456	AT5G43570.1  CDS  gene_syn K9D7.7, K9D7_7  function Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.  go_function serine-type endopeptidase inhibitor activity|GO:0004867||IEA  go_component cellular_component|GO:0005575||ND  go_process defense response|GO:0006952|18674922|ISS  go_process response to wounding|GO:0009611||ISS  go_function serine-type endopeptidase inhibitor activity|GO:0004867||ISS  product serine-type endopeptidase inhibitor  note serine-type endopeptidase inhibitor; FUNCTIONS IN: serine-type endopeptidase inhibitor activity; INVOLVED IN: response to wounding, defense response; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I13, potato inhibitor I (InterPro:IPR000864); BEST Arabidopsis thaliana protein match is: serine protease inhibitor, potato inhibitor I-type family protein (TAIR:AT3G50020.1); Has 68 Blast hits to 68 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G43570.1p  transcript_id AT5G43570.1  protein_id AT5G43570.1p  transcript_id AT5G43570.1  
At5g43580	chr5:017508569	0.0	C/17508569-17508576,17508084-17508297	AT5G43580.1  CDS  gene_syn K9D7.8, K9D7_8  function Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.  go_component cellular_component|GO:0005575||ND  go_process defense response|GO:0006952|18674922|ISS  go_process response to wounding|GO:0009611||ISS  go_function serine-type endopeptidase inhibitor activity|GO:0004867||ISS  product serine-type endopeptidase inhibitor  note serine-type endopeptidase inhibitor; FUNCTIONS IN: serine-type endopeptidase inhibitor activity; INVOLVED IN: response to wounding, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, hypocotyl, root, leaf; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G43580.1p  transcript_id AT5G43580.1  protein_id AT5G43580.1p  transcript_id AT5G43580.1  
At5g43590	chr5:017511355	0.0	C/17511355-17511477,17510896-17511074,17510445-17510628,17510190-17510342,17509788-17510096,17509529-17509704,17509368-17509449	AT5G43590.1  CDS  gene_syn K9D7.9, K9D7_9  go_process lipid metabolic process|GO:0006629||IEA  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function nutrient reservoir activity|GO:0045735||ISS  product patatin, putative  note patatin, putative; FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: metabolic process, lipid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: PLP5 (PATATIN-LIKE PROTEIN 5); nutrient reservoir (TAIR:AT4G37060.1); Has 1538 Blast hits to 1536 proteins in 268 species: Archae - 0; Bacteria - 322; Metazoa - 216; Fungi - 111; Plants - 608; Viruses - 3; Other Eukaryotes - 278 (source: NCBI BLink).  protein_id AT5G43590.1p  transcript_id AT5G43590.1  protein_id AT5G43590.1p  transcript_id AT5G43590.1  
At5g43600	chr5:017512651	0.0	W/17512651-17512857,17512944-17513029,17513107-17513181,17513280-17513408,17513497-17513583,17513669-17513877,17513965-17514067,17514150-17514241,17514320-17514382,17514533-17514773,17515054-17515094,17515183-17515280	AT5G43600.1  CDS  gene_syn ARABIDOPSIS THALIANA ALLANTOATE AMIDOHYDROLASE 2, ATAAH-2, K9D7.10, K9D7_10, UAH, UREIDOGLYCOLATE AMIDOHYDROLASE  gene UAH  function Encodes a protein that is 27% identical and 43% similar to the E. coli allantoate amidohydrolase. In vitro assays with purified protein and allantoate as a substrate do not show any increase in ammonium concentration, no AAH activity.  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_process metabolic process|GO:0008152||IEA  go_process proteolysis|GO:0006508||ISS  go_function metallopeptidase activity|GO:0008237||ISS  go_function allantoate deiminase activity|GO:0047652|18065556|IDA  product UAH (UREIDOGLYCOLATE AMIDOHYDROLASE); allantoate deiminase/ metallopeptidase  note UREIDOGLYCOLATE AMIDOHYDROLASE (UAH); FUNCTIONS IN: allantoate deiminase activity, metallopeptidase activity; INVOLVED IN: proteolysis, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M20 (InterPro:IPR002933), Amidase, hydantoinase/carbamoylase (InterPro:IPR010158), Peptidase M20, dimerisation (InterPro:IPR011650); BEST Arabidopsis thaliana protein match is: ATAAH (Arabidopsis thaliana Allantoate Amidohydrolase); allantoate deiminase/ metallopeptidase (TAIR:AT4G20070.1); Has 2491 Blast hits to 2491 proteins in 532 species: Archae - 9; Bacteria - 1500; Metazoa - 12; Fungi - 122; Plants - 39; Viruses - 0; Other Eukaryotes - 809 (source: NCBI BLink).  protein_id AT5G43600.1p  transcript_id AT5G43600.1  protein_id AT5G43600.1p  transcript_id AT5G43600.1  
At5g43603	chr5:017516308	0.0	W/17516308-17516398	AT5G43603.1  miRNA  gene_syn MICRORNA 166, MICRORNA 166F, MIR166, MIR166F  gene MIR166F  function Encodes a microRNA that targets several HD-ZIPIII family members including PHV, PHB, REV, ATHB-8, and ATHB-15. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCGGACCAGGCUUCAUUCCCC  go_process gene silencing by miRNA|GO:0035195|15851028|IDA  product MIR166F (MICRORNA 166F); miRNA  transcript_id AT5G43603.1  
At5g43610	chr5:017519079	0.0	W/17519079-17520323,17520426-17520489,17520839-17521008	AT5G43610.1  CDS  gene_syn ATSUC6, K9D7.11, K9D7_11, Sucrose-proton symporter 6  gene ATSUC6  go_component integral to plasma membrane|GO:0005887||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process sucrose transport|GO:0015770||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function sucrose:hydrogen symporter activity|GO:0008506||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product ATSUC6 (Sucrose-proton symporter 6); carbohydrate transmembrane transporter/ sucrose:hydrogen symporter/ sugar:hydrogen symporter  note Sucrose-proton symporter 6 (ATSUC6); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, sucrose:hydrogen symporter activity; INVOLVED IN: transport, sucrose transport; LOCATED IN: integral to membrane, integral to plasma membrane, membrane; EXPRESSED IN: leaf whorl, sepal, seed, leaf; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, 4 leaf senescence stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Sucrose/H+ symporter, plant (InterPro:IPR005989), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ATSUC8 (Sucrose-proton symporter 8); carbohydrate transmembrane transporter/ sucrose:hydrogen symporter/ sugar:hydrogen symporter (TAIR:AT2G14670.1); Has 1601 Blast hits to 1498 proteins in 337 species: Archae - 28; Bacteria - 483; Metazoa - 375; Fungi - 133; Plants - 254; Viruses - 0; Other Eukaryotes - 328 (source: NCBI BLink).  protein_id AT5G43610.1p  transcript_id AT5G43610.1  protein_id AT5G43610.1p  transcript_id AT5G43610.1  
At5g43620	chr5:017522653	0.0	W/17522653-17523885	AT5G43620.1  CDS  gene_syn K9D7.12, K9D7_12  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product S-locus protein-related  note S-locus protein-related; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2-type) family protein (TAIR:AT1G66500.1); Has 263 Blast hits to 263 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 79; Plants - 35; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT5G43620.1p  transcript_id AT5G43620.1  protein_id AT5G43620.1p  transcript_id AT5G43620.1  
At5g43630	chr5:017527261	0.0	W/17527261-17527594,17527677-17527784,17527894-17529589,17529670-17529785,17529869-17529987,17530085-17530207	AT5G43630.1  CDS  gene_syn K9D7.13, K9D7_13, TZP  gene TZP  function Encodes a zinc knuckle protein that negatively regulates morning specific growth. The role of TZP in hypocotyl elongation was established through a QTL analysis of BayXSha RIL populations. The Bay-0 allele contains a deletion causing a frameshift mutation. TZP is under circadian control and acts to regulate morning-specific hypocotyl growth.  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634|18971337|IDA  go_process growth|GO:0040007|18971337|IMP  go_process regulation of transcription|GO:0045449|18971337|TAS  go_function nucleic acid binding|GO:0003676||ISS  product TZP; DNA binding / nucleic acid binding / zinc ion binding  note TZP; FUNCTIONS IN: DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: growth, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Plus-3 domain, subgroup (InterPro:IPR018144), Plus-3 (InterPro:IPR004343), Zinc finger, CCHC-type (InterPro:IPR001878); Has 135 Blast hits to 117 proteins in 46 species: Archae - 0; Bacteria - 2; Metazoa - 49; Fungi - 8; Plants - 26; Viruses - 6; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT5G43630.1p  transcript_id AT5G43630.1  protein_id AT5G43630.1p  transcript_id AT5G43630.1  
At5g43640	chr5:017531302	0.0	W/17531302-17531444,17531528-17531585,17532122-17532370	AT5G43640.1  CDS  gene_syn K9D7.14, K9D7_14  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S15 (RPS15E)  note 40S ribosomal protein S15 (RPS15E); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit; EXPRESSED IN: sperm cell, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein S15, eukaryotic/archaeal (InterPro:IPR005713), Ribosomal protein S19/S15 (InterPro:IPR002222); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S15 (RPS15C) (TAIR:AT5G09500.1); Has 4715 Blast hits to 4715 proteins in 1365 species: Archae - 179; Bacteria - 2030; Metazoa - 207; Fungi - 129; Plants - 458; Viruses - 0; Other Eukaryotes - 1712 (source: NCBI BLink).  protein_id AT5G43640.1p  transcript_id AT5G43640.1  protein_id AT5G43640.1p  transcript_id AT5G43640.1  
At5g43650	chr5:017534408	0.0	C/17534408-17534758,17533619-17533909,17533310-17533411	AT5G43650.1  CDS  gene_syn K9D7.15, K9D7_15  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: TT8 (TRANSPARENT TESTA 8); DNA binding / transcription factor (TAIR:AT4G09820.1); Has 362 Blast hits to 362 proteins in 62 species: Archae - 0; Bacteria - 2; Metazoa - 21; Fungi - 7; Plants - 303; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT5G43650.1p  transcript_id AT5G43650.1  protein_id AT5G43650.1p  transcript_id AT5G43650.1  
At5g43660	chr5:017538543	0.0	C/17538543-17538595,17538015-17538315,17537642-17537689,17537390-17537566,17537167-17537317,17537000-17537086,17536790-17536914,17536582-17536703,17536337-17536505	AT5G43660.1  CDS  gene_syn K9D7.3, K9D7_3  go_process protein metabolic process|GO:0019538||IEA  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||IEA  go_component cellular_component|GO:0005575||ND  product iron ion binding / oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors  note iron ion binding / oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, iron ion binding; INVOLVED IN: protein metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620); BEST Arabidopsis thaliana protein match is: iron ion binding / oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (TAIR:AT1G48740.1); Has 133 Blast hits to 132 proteins in 32 species: Archae - 0; Bacteria - 16; Metazoa - 65; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT5G43660.1p  transcript_id AT5G43660.1  protein_id AT5G43660.1p  transcript_id AT5G43660.1  
At5g43670	chr5:017541014	0.0	C/17541014-17541733,17539025-17540689	AT5G43670.1  CDS  gene_syn MQO24.2, MQO24_2  go_component COPII vesicle coat|GO:0030127||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process ER to Golgi vesicle-mediated transport|GO:0006888||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product transport protein, putative  note transport protein, putative; FUNCTIONS IN: protein binding, transporter activity, zinc ion binding; INVOLVED IN: intracellular protein transport, transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24 helical region (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24 trunk region (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin region (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: transport protein, putative (TAIR:AT3G23660.1); Has 797 Blast hits to 786 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 341; Fungi - 201; Plants - 120; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).  protein_id AT5G43670.1p  transcript_id AT5G43670.1  protein_id AT5G43670.1p  transcript_id AT5G43670.1  
At5g43680	chr5:017544074	0.0	W/17544074-17544134,17544261-17544382,17544497-17544638,17544713-17544771,17544860-17545028,17545098-17545208,17545320-17545354	AT5G43680.1  CDS  gene_syn MQO24.4, MQO24_4  product unknown protein  note unknown protein; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 145 Blast hits to 145 proteins in 56 species: Archae - 0; Bacteria - 106; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT5G43680.1p  transcript_id AT5G43680.1  protein_id AT5G43680.1p  transcript_id AT5G43680.1  
At5g43690	chr5:017546273	0.0	W/17546273-17547268	AT5G43690.1  CDS  gene_syn MQD19.2, MQD19_2  go_function sulfotransferase activity|GO:0008146||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function sulfotransferase activity|GO:0008146||ISS  product sulfotransferase family protein  note sulfotransferase family protein; FUNCTIONS IN: sulfotransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Sulfotransferase (InterPro:IPR000863); BEST Arabidopsis thaliana protein match is: sulfotransferase family protein (TAIR:AT3G45070.1); Has 2120 Blast hits to 2084 proteins in 143 species: Archae - 0; Bacteria - 156; Metazoa - 1442; Fungi - 1; Plants - 312; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink).  protein_id AT5G43690.1p  transcript_id AT5G43690.1  protein_id AT5G43690.1p  transcript_id AT5G43690.1  
At5g43695	chr5:017548249	0.0	W/17548249-17548288,17548370-17548551	AT5G43695.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03826.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G43695.1p  transcript_id AT5G43695.1  protein_id AT5G43695.1p  transcript_id AT5G43695.1  
At5g43700	chr5:017550465	0.0	W/17550465-17550643,17550736-17551038,17551128-17551206	AT5G43700.1  CDS  gene_syn ATAUX2-11, AUXIN INDUCIBLE 2-11, IAA4, INDOLE-3-ACETIC ACID INDUCIBLE 4, MQD19.3, MQD19_3  gene ATAUX2-11  function Auxin inducible protein similar to transcription factors.  go_component intracellular|GO:0005622||ISS  go_component nucleus|GO:0005634|8278386|IDA  go_process regulation of translation|GO:0006417||ISS  go_process response to auxin stimulus|GO:0009733|7658471|IEP  go_process response to auxin stimulus|GO:0009733||ISS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function DNA binding|GO:0003677|8278386|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ATAUX2-11 (AUXIN INDUCIBLE 2-11); DNA binding / transcription factor  note AUXIN INDUCIBLE 2-11 (ATAUX2-11); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to cyclopentenone, response to auxin stimulus, regulation of translation; LOCATED IN: nucleus, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: SHY2 (SHORT HYPOCOTYL 2); transcription factor (TAIR:AT1G04240.1); Has 1199 Blast hits to 1198 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1198; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G43700.1p  transcript_id AT5G43700.1  protein_id AT5G43700.1p  transcript_id AT5G43700.1  
At5g43710	chr5:017556395	0.0	C/17556395-17556523,17555966-17556085,17555790-17555882,17555565-17555651,17555217-17555307,17555078-17555133,17554744-17554816,17554448-17554557,17554277-17554327,17554015-17554103,17553846-17553927,17553639-17553752,17553454-17553533,17553227-17553362,17553067-17553137,17552775-17552979,17552252-17552539	AT5G43710.1  CDS  gene_syn MQD19.4, MQD19_4  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_function mannosyl-oligosaccharide 1,2-alpha-mannosidase activity|GO:0004571||IEA  go_function calcium ion binding|GO:0005509||IEA  go_process protein amino acid N-linked glycosylation|GO:0006487||ISS  go_function alpha-mannosidase activity|GO:0004559||ISS  product glycoside hydrolase family 47 protein  note glycoside hydrolase family 47 protein; FUNCTIONS IN: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, alpha-mannosidase activity, calcium ion binding; INVOLVED IN: protein amino acid N-linked glycosylation; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 47 (InterPro:IPR001382); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 47 protein (TAIR:AT1G27520.1); Has 1521 Blast hits to 1360 proteins in 140 species: Archae - 0; Bacteria - 4; Metazoa - 685; Fungi - 603; Plants - 83; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).  protein_id AT5G43710.1p  transcript_id AT5G43710.1  protein_id AT5G43710.1p  transcript_id AT5G43710.1  
At5g43720	chr5:017559086	0.0	C/17559086-17559238,17558739-17558868,17558524-17558651,17558286-17558424,17558054-17558168,17557901-17557964,17557551-17557808,17557431-17557433	AT5G43720.1  CDS  gene_syn MQD19.5, MQD19_5  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G04230.1); Has 2442 Blast hits to 1380 proteins in 187 species: Archae - 2; Bacteria - 58; Metazoa - 1436; Fungi - 375; Plants - 60; Viruses - 9; Other Eukaryotes - 502 (source: NCBI BLink).  protein_id AT5G43720.1p  transcript_id AT5G43720.1  protein_id AT5G43720.1p  transcript_id AT5G43720.1  
At5g43725	chr5:017559541	0.0	W/17559541-17560062	AT5G43725.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G43725.1  
At5g43725	chr5:017559545	0.0	W/17559545-17564223	AT5G43725.2  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G43725.2  
At5g43730	chr5:017560267	0.0	W/17560267-17562813	AT5G43730.1  CDS  gene_syn MQD19.6, MQD19_6  go_component endomembrane system|GO:0012505||IEA  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative  note disease resistance protein (CC-NBS-LRR class), putative; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT5G43740.2); Has 11253 Blast hits to 10716 proteins in 446 species: Archae - 9; Bacteria - 351; Metazoa - 1706; Fungi - 83; Plants - 8940; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).  protein_id AT5G43730.1p  transcript_id AT5G43730.1  protein_id AT5G43730.1p  transcript_id AT5G43730.1  
At5g43740	chr5:017566010	0.0	W/17566010-17568598	AT5G43740.1  CDS  gene_syn MQD19.7, MQD19_7  go_component endomembrane system|GO:0012505||IEA  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative  note disease resistance protein (CC-NBS-LRR class), putative; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT5G43730.1); Has 9463 Blast hits to 9267 proteins in 362 species: Archae - 5; Bacteria - 166; Metazoa - 493; Fungi - 40; Plants - 8688; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT5G43740.1p  transcript_id AT5G43740.1  protein_id AT5G43740.1p  transcript_id AT5G43740.1  
At5g43740	chr5:017566010	0.0	W/17566010-17568598	AT5G43740.2  CDS  gene_syn MQD19.7, MQD19_7  go_component endomembrane system|GO:0012505||IEA  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative  note disease resistance protein (CC-NBS-LRR class), putative; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT5G43730.1); Has 9463 Blast hits to 9267 proteins in 362 species: Archae - 5; Bacteria - 166; Metazoa - 493; Fungi - 40; Plants - 8688; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT5G43740.2p  transcript_id AT5G43740.2  protein_id AT5G43740.2p  transcript_id AT5G43740.2  
At5g43745	chr5:017574863	0.0	C/17574863-17574954,17574448-17574503,17574292-17574380,17573866-17574119,17573373-17573444,17573046-17573118,17572825-17572923,17572592-17572746,17572400-17572504,17572169-17572255,17571749-17571833,17571512-17571659,17571337-17571413,17570992-17571237,17570787-17570900,17570634-17570726,17570430-17570556,17570267-17570343,17570143-17570190,17569989-17570058,17569830-17569903,17569621-17569731,17569435-17569536	AT5G43745.1  CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  product phosphotransferase-related  note phosphotransferase-related; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1012 (InterPro:IPR010420); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G02940.1); Has 252 Blast hits to 249 proteins in 32 species: Archae - 0; Bacteria - 23; Metazoa - 0; Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT5G43745.1p  transcript_id AT5G43745.1  protein_id AT5G43745.1p  transcript_id AT5G43745.1  
At5g43750	chr5:017580924	0.0	C/17580924-17581145,17580785-17580848,17580616-17580678,17580478-17580536,17580100-17580330	AT5G43750.1  CDS  gene_syn MQD19.9, MQD19_9  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 12 Blast hits to 12 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G43750.1p  transcript_id AT5G43750.1  protein_id AT5G43750.1p  transcript_id AT5G43750.1  
At5g43755	chr5:017583727	0.0	C/17583727-17583772,17583327-17583560,17582977-17583227	AT5G43755.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT2G04420.1); Has 45 Blast hits to 45 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G43755.1p  transcript_id AT5G43755.1  protein_id AT5G43755.1p  transcript_id AT5G43755.1  
At5g43760	chr5:017585903	0.0	W/17585903-17586688,17587683-17588486	AT5G43760.1  CDS  gene_syn 3-KETOACYL-COA SYNTHASE 20, KCS20, MQD19.11, MQD19_11  gene KCS20  function Encodes KCS20, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).  go_component membrane|GO:0016020||IEA  go_process response to osmotic stress|GO:0006970|18465198|IEP  go_process response to cold|GO:0009409|18465198|IEP  go_process response to light stimulus|GO:0009416|18465198|IEP  go_function fatty acid elongase activity|GO:0009922|15277688|IDA  product KCS20 (3-KETOACYL-COA SYNTHASE 20); fatty acid elongase  note 3-KETOACYL-COA SYNTHASE 20 (KCS20); FUNCTIONS IN: fatty acid elongase activity; INVOLVED IN: response to light stimulus, response to cold, response to osmotic stress; LOCATED IN: membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038), Chalcone and stilbene synthases, C-terminal (InterPro:IPR012328); BEST Arabidopsis thaliana protein match is: KCS2 (3-KETOACYL-COA SYNTHASE 2); fatty acid elongase (TAIR:AT1G04220.1); Has 3558 Blast hits to 3553 proteins in 907 species: Archae - 0; Bacteria - 1328; Metazoa - 0; Fungi - 2; Plants - 2077; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).  protein_id AT5G43760.1p  transcript_id AT5G43760.1  protein_id AT5G43760.1p  transcript_id AT5G43760.1  
At5g43770	chr5:017588807	0.0	W/17588807-17589370	AT5G43770.1  CDS  gene_syn MQD19.12, MQD19_12  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product proline-rich family protein  note proline-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 52105 Blast hits to 22358 proteins in 1184 species: Archae - 171; Bacteria - 9633; Metazoa - 18855; Fungi - 4267; Plants - 9147; Viruses - 2206; Other Eukaryotes - 7826 (source: NCBI BLink).  protein_id AT5G43770.1p  transcript_id AT5G43770.1  protein_id AT5G43770.1p  transcript_id AT5G43770.1  
At5g43780	chr5:017590969	0.0	C/17590969-17591480,17590447-17590852,17590031-17590291,17589861-17589947,17589631-17589774	AT5G43780.1  CDS  gene_syn APS4, MQD19.13, MQD19_13  gene APS4  function sulfate adenylyltransferase, ATP sulfurylase  go_component chloroplast|GO:0009507|18431481|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component chloroplast|GO:0009507|10806350|IDA  go_process sulfate assimilation|GO:0000103|11005831|TAS  go_function sulfate adenylyltransferase (ATP) activity|GO:0004781|10806350|IMP  go_function sulfate adenylyltransferase (ATP) activity|GO:0004781|10806350|ISS  product APS4; sulfate adenylyltransferase (ATP)  note APS4; FUNCTIONS IN: sulfate adenylyltransferase (ATP) activity; INVOLVED IN: sulfate assimilation; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), PUA-like (InterPro:IPR015947), ATP-sulfurylase (InterPro:IPR002650); BEST Arabidopsis thaliana protein match is: APS3; sulfate adenylyltransferase (ATP) (TAIR:AT4G14680.1); Has 1532 Blast hits to 1530 proteins in 420 species: Archae - 54; Bacteria - 506; Metazoa - 217; Fungi - 151; Plants - 136; Viruses - 0; Other Eukaryotes - 468 (source: NCBI BLink).  protein_id AT5G43780.1p  transcript_id AT5G43780.1  protein_id AT5G43780.1p  transcript_id AT5G43780.1  
At5g43790	chr5:017592099	0.0	C/17592099-17593481	AT5G43790.1  CDS  gene_syn MQD19.14, MQD19_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G37380.1); Has 11472 Blast hits to 4730 proteins in 104 species: Archae - 0; Bacteria - 3; Metazoa - 32; Fungi - 25; Plants - 11238; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink).  protein_id AT5G43790.1p  transcript_id AT5G43790.1  protein_id AT5G43790.1p  transcript_id AT5G43790.1  
At5g43800	chr5:017597379	0.0	W/17597379-17605019	AT5G43800.1  mRNA_TE_gene  pseudo  gene_syn MQD19.16, MQD19_16  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At5g43810	chr5:017611939	0.0	W/17611939-17612421,17612616-17612827,17612907-17613190,17613278-17613387,17613477-17613583,17613662-17613800,17613886-17614002,17614092-17614199,17614281-17614475,17614579-17614738,17614825-17614946,17615030-17615167,17615246-17615388,17615468-17615530,17615613-17615676,17615767-17615902,17615990-17616063,17616156-17616282,17616378-17616562	AT5G43810.1  CDS  gene_syn AGO10, ARGONAUTE PROTEIN 10, MQD19.17, MQD19_17, PINHEAD, PNH, ZLL, ZWILLE  gene ZLL  function Encodes a member of the EIF2C (elongation initiation factor 2c)/ Argonaute class of proteins. Required to establish the central-peripheral organization of the embryo apex. Along with WUS and CLV genes, controls the relative organization of central zone and peripheral zone cells in meristems. Acts in embryonic provascular tissue potentiating WUSCHEL function during meristem development in the embryo.  go_component cytoplasm|GO:0005737|12000455|ISS  go_process regulation of meristem organization|GO:0009934|14564520|TAS  go_process primary shoot apical meristem specification|GO:0010072|18653559|IMP  go_process miRNA metabolic process|GO:0010586|19054365|IMP  go_function translation initiation factor activity|GO:0003743||ISS  product ZLL (ZWILLE); translation initiation factor  note ZWILLE (ZLL); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: regulation of meristem organization, miRNA metabolic process, primary shoot apical meristem specification; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Argonaute and Dicer protein, PAZ (InterPro:IPR003100), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: AGO1 (ARGONAUTE 1); endoribonuclease/ miRNA binding / protein binding / siRNA binding (TAIR:AT1G48410.1); Has 1495 Blast hits to 1427 proteins in 141 species: Archae - 0; Bacteria - 2; Metazoa - 909; Fungi - 189; Plants - 269; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink).  protein_id AT5G43810.1p  transcript_id AT5G43810.1  protein_id AT5G43810.1p  transcript_id AT5G43810.1  
At5g43820	chr5:017618948	0.0	W/17618948-17620588	AT5G43820.1  CDS  gene_syn MQD19.18, MQD19_18  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G15010.1); Has 14980 Blast hits to 5082 proteins in 161 species: Archae - 0; Bacteria - 2; Metazoa - 156; Fungi - 253; Plants - 14070; Viruses - 0; Other Eukaryotes - 499 (source: NCBI BLink).  protein_id AT5G43820.1p  transcript_id AT5G43820.1  protein_id AT5G43820.1p  transcript_id AT5G43820.1  
At5g43822	chr5:017620830	0.0	W/17620830-17620961,17621035-17621153,17621265-17621435,17621516-17621572,17621650-17621714,17621825-17621868	AT5G43822.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT5G43822.1p  transcript_id AT5G43822.1  protein_id AT5G43822.1p  transcript_id AT5G43822.1  
At5g43830	chr5:017624037	0.0	C/17624037-17624239,17623156-17623396,17622959-17623079,17622593-17622783	AT5G43830.1  CDS  gene_syn MQD19.19, MQD19_19  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22850.1); Has 497 Blast hits to 497 proteins in 168 species: Archae - 0; Bacteria - 238; Metazoa - 12; Fungi - 0; Plants - 192; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT5G43830.1p  transcript_id AT5G43830.1  protein_id AT5G43830.1p  transcript_id AT5G43830.1  
At5g43840	chr5:017626131	0.0	C/17626131-17626364,17625437-17626051	AT5G43840.1  CDS  gene_syn ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6A, AT-HSFA6A, HEAT SHOCK TRANSCRIPTION FACTOR A6A, HSFA6A, MQD19.20, MQD19_20  gene AT-HSFA6A  function member of Heat Stress Transcription Factor (Hsf) family  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AT-HSFA6A; DNA binding / transcription factor  note AT-HSFA6A; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: AT-HSFA6B; DNA binding / transcription factor (TAIR:AT3G22830.1); Has 1299 Blast hits to 1294 proteins in 157 species: Archae - 0; Bacteria - 4; Metazoa - 260; Fungi - 316; Plants - 457; Viruses - 0; Other Eukaryotes - 262 (source: NCBI BLink).  protein_id AT5G43840.1p  transcript_id AT5G43840.1  protein_id AT5G43840.1p  transcript_id AT5G43840.1  
At5g43850	chr5:017629111	0.0	C/17629111-17629122,17628798-17628885,17628487-17628581,17627628-17627867,17627364-17627492	AT5G43850.1  CDS  gene_syn ARD4, ATARD4, MQD19.21, MQD19_21  gene ARD4  go_process methionine salvage|GO:0019509||IEA  go_component cellular_component|GO:0005575||ND  go_function acireductone dioxygenase [iron(II)-requiring] activity|GO:0010309|17144895|ISS  go_function metal ion binding|GO:0046872||ISS  product ARD4; acireductone dioxygenase [iron(II)-requiring]/ metal ion binding  note ARD4; FUNCTIONS IN: acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding; INVOLVED IN: methionine salvage; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acireductone dioxygenase, ARD (InterPro:IPR004313), Cupin, RmlC-type (InterPro:IPR011051), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: acireductone dioxygenase [iron(II)-requiring]/ metal ion binding (TAIR:AT4G14710.2); Has 1016 Blast hits to 1012 proteins in 305 species: Archae - 0; Bacteria - 344; Metazoa - 125; Fungi - 85; Plants - 390; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT5G43850.1p  transcript_id AT5G43850.1  protein_id AT5G43850.1p  transcript_id AT5G43850.1  
At5g43860	chr5:017630492	0.0	W/17630492-17630761,17631498-17632184	AT5G43860.1  CDS  gene_syn ARABIDOPSIS THALIANA CHLOROPHYLLASE 2, ATCLH2, CHLOROPHYLLASE 2, CLH2, MQD19.22, MQD19_22  gene CLH2  function Encodes a chlorophyllase, the first enzyme in chlorophyll degradation. It catalyzes the hydrolysis of the ester bond to chlorophyllide and phytol. AtCLH2 has a typical signal sequence for the chloroplast. Gene expression does not respond to methyljasmonate, a known promoter of senescence and chlorophyll degradation.  go_component chloroplast|GO:0009507|10611389|ISS  go_process response to jasmonic acid stimulus|GO:0009753|10611389|IEP  go_process chlorophyll catabolic process|GO:0015996|10611389|IDA  go_function chlorophyllase activity|GO:0047746|10611389|IDA  product ATCLH2; chlorophyllase  note ATCLH2; FUNCTIONS IN: chlorophyllase activity; INVOLVED IN: response to jasmonic acid stimulus, chlorophyll catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyllase (InterPro:IPR010821), Chlorophyllase, chloroplast (InterPro:IPR017395); BEST Arabidopsis thaliana protein match is: ATCLH1 (ARABIDOPSIS THALIANA CORONATINE-INDUCED PROTEIN 1); chlorophyllase (TAIR:AT1G19670.1); Has 98 Blast hits to 98 proteins in 31 species: Archae - 2; Bacteria - 12; Metazoa - 12; Fungi - 8; Plants - 58; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G43860.1p  transcript_id AT5G43860.1  protein_id AT5G43860.1p  transcript_id AT5G43860.1  
At5g43870	chr5:017635543	0.0	C/17635543-17635863,17635236-17635331,17634050-17634470,17633481-17633687,17633317-17633366,17633133-17633190,17632538-17632746	AT5G43870.1  CDS  gene_syn F6B6.1, F6B6_1  go_component plasma membrane|GO:0005886|17317660|IDA  go_process signal transduction|GO:0007165|15358268|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product phosphoinositide binding  note phosphoinositide binding; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin-like, plant (InterPro:IPR013666), Protein of unknown function DUF828, plant (InterPro:IPR008546); BEST Arabidopsis thaliana protein match is: phosphoinositide binding (TAIR:AT4G14740.2); Has 359 Blast hits to 236 proteins in 62 species: Archae - 0; Bacteria - 83; Metazoa - 16; Fungi - 10; Plants - 119; Viruses - 3; Other Eukaryotes - 128 (source: NCBI BLink).  protein_id AT5G43870.1p  transcript_id AT5G43870.1  protein_id AT5G43870.1p  transcript_id AT5G43870.1  
At5g43880	chr5:017642722	0.0	C/17642722-17642848,17642595-17642638,17640991-17642499,17640737-17640890,17639975-17640651	AT5G43880.1  CDS  gene_syn F6B6.2, F6B6_2  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28760.2); Has 467 Blast hits to 305 proteins in 61 species: Archae - 0; Bacteria - 75; Metazoa - 105; Fungi - 36; Plants - 139; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).  protein_id AT5G43880.1p  transcript_id AT5G43880.1  protein_id AT5G43880.1p  transcript_id AT5G43880.1  
At5g43890	chr5:017648857	0.0	C/17648857-17650131	AT5G43890.1  CDS  gene_syn F6B6.3, F6B6_3, SUPER1, SUPPRESSOR OF ER 1, YUC5, YUCCA5  gene YUC5  function Encodes a YUCCA-like putative flavin monooxygenase, the activation tagging mutant has increased level of IAA, increased auxin response and phenotype of auxin overproduction, rescues erecta mutant phenotype  go_component cellular_component|GO:0005575||ND  go_process auxin biosynthetic process|GO:0009851|16126863|IMP  go_function monooxygenase activity|GO:0004497|16126863|ISS  go_function monooxygenase activity|GO:0004497||ISS  product YUCCA5; monooxygenase  note YUCCA5; FUNCTIONS IN: monooxygenase activity; INVOLVED IN: auxin biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: early rosette growth, IL.00 inflorescence just visible; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960), Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027); BEST Arabidopsis thaliana protein match is: flavin-containing monooxygenase family protein / FMO family protein (TAIR:AT1G04180.1); Has 8055 Blast hits to 8044 proteins in 1083 species: Archae - 22; Bacteria - 4079; Metazoa - 675; Fungi - 977; Plants - 368; Viruses - 0; Other Eukaryotes - 1934 (source: NCBI BLink).  protein_id AT5G43890.1p  transcript_id AT5G43890.1  protein_id AT5G43890.1p  transcript_id AT5G43890.1  
At5g43900	chr5:017666651	0.0	C/17666651-17666653,17666194-17666322,17665950-17666093,17665730-17665875,17665471-17665627,17665112-17665170,17664876-17665035,17664601-17664750,17664369-17664505,17664119-17664265,17663906-17664007,17663493-17663550,17663300-17663401,17663028-17663065,17662748-17662874,17662463-17662630,17662244-17662375,17662040-17662149,17661902-17661962,17661637-17661814,17661314-17661519,17661035-17661154,17660814-17660912,17660476-17660688,17660186-17660325,17659985-17660096,17659851-17659895,17659684-17659746,17659431-17659601,17659097-17659249,17658793-17658993,17658569-17658697,17658413-17658483,17658238-17658334,17658086-17658142,17657864-17657920,17657695-17657775,17657509-17657591,17657241-17657352	AT5G43900.1  CDS  gene_syn ARABIDOPSIS MYOSIN 2, ATMYA2, F6B6.4, F6B6_4, MYA2, MYOSIN X1 2, MYOSIN XI-6, XI-2, XI-6  gene MYA2  function Encodes a member of the type XI myosin protein family that binds F-actin and co-localizes with actin filaments and peroxisomes. Homozygous mutants are reported to have pleiotropic effects in growth and fertility and may also be lethal. This protein is also involved in root hair growth and organelle trafficking. This protein interacts with RabC2a and RabD1 in a GTP-dependent manner.  go_component peroxisome|GO:0005777|15792961|IDA  go_component myosin complex|GO:0016459|7811972|ISS  go_process actin filament-based movement|GO:0030048|11516337|TAS  go_process root hair elongation|GO:0048767|18178669|IMP  go_process Golgi localization|GO:0051645|18178669|IMP  go_process mitochondrion localization|GO:0051646|18178669|IMP  go_process mitochondrion localization|GO:0051646|19060218|IGI  go_process peroxisome localization|GO:0060151|18178669|IMP  go_function motor activity|GO:0003774|11516337|ISS  go_function Rab GTPase binding|GO:0017137|18703495|IPI  go_function GTP-dependent protein binding|GO:0030742|18703495|IPI  product MYA2 (ARABIDOPSIS MYOSIN 2); GTP-dependent protein binding / Rab GTPase binding / motor  note ARABIDOPSIS MYOSIN 2 (MYA2); FUNCTIONS IN: motor activity, GTP-dependent protein binding, Rab GTPase binding; INVOLVED IN: root hair elongation, peroxisome localization, Golgi localization, actin filament-based movement, mitochondrion localization; LOCATED IN: peroxisome, myosin complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor region (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: XIB (MYOSIN XI B); motor (TAIR:AT1G04160.1); Has 19766 Blast hits to 13317 proteins in 927 species: Archae - 181; Bacteria - 981; Metazoa - 12342; Fungi - 1190; Plants - 660; Viruses - 52; Other Eukaryotes - 4360 (source: NCBI BLink).  protein_id AT5G43900.1p  transcript_id AT5G43900.1  protein_id AT5G43900.1p  transcript_id AT5G43900.1  
At5g43910	chr5:017670041	0.0	C/17670041-17670085,17669881-17669970,17669708-17669785,17669497-17669571,17669354-17669406,17669096-17669246,17668894-17669004,17668386-17668512,17668074-17668174,17667861-17667987,17667735-17667787,17667537-17667623	AT5G43910.2  CDS  gene_syn F6B6.5, F6B6_5  go_process D-ribose metabolic process|GO:0006014||IEA  go_function ribokinase activity|GO:0004747||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product pfkB-type carbohydrate kinase family protein  note pfkB-type carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-type carbohydrate kinase family protein (TAIR:AT4G28706.3); Has 4738 Blast hits to 4663 proteins in 973 species: Archae - 95; Bacteria - 3070; Metazoa - 201; Fungi - 73; Plants - 190; Viruses - 0; Other Eukaryotes - 1109 (source: NCBI BLink).  protein_id AT5G43910.2p  transcript_id AT5G43910.2  protein_id AT5G43910.2p  transcript_id AT5G43910.2  
At5g43910	chr5:017670041	0.0	C/17670041-17670085,17669881-17669970,17669708-17669785,17669497-17669571,17669354-17669406,17669096-17669246,17668894-17669004,17668386-17668512,17668074-17668174,17667942-17667956	AT5G43910.3  CDS  gene_syn F6B6.5, F6B6_5  go_process D-ribose metabolic process|GO:0006014||IEA  go_function ribokinase activity|GO:0004747||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product pfkB-type carbohydrate kinase family protein  note pfkB-type carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139); BEST Arabidopsis thaliana protein match is: pfkB-type carbohydrate kinase family protein (TAIR:AT4G28706.3); Has 2504 Blast hits to 2504 proteins in 705 species: Archae - 70; Bacteria - 1739; Metazoa - 171; Fungi - 21; Plants - 124; Viruses - 0; Other Eukaryotes - 379 (source: NCBI BLink).  protein_id AT5G43910.3p  transcript_id AT5G43910.3  protein_id AT5G43910.3p  transcript_id AT5G43910.3  
At5g43910	chr5:017670041	0.0	C/17670041-17670085,17669881-17669970,17669708-17669785,17669497-17669571,17669354-17669406,17669096-17669246,17668894-17669004,17668386-17668512,17668074-17668174,17667942-17667968	AT5G43910.1  CDS  gene_syn F6B6.5, F6B6_5  go_process D-ribose metabolic process|GO:0006014||IEA  go_function ribokinase activity|GO:0004747||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product pfkB-type carbohydrate kinase family protein  note pfkB-type carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139); BEST Arabidopsis thaliana protein match is: pfkB-type carbohydrate kinase family protein (TAIR:AT4G28706.3); Has 2505 Blast hits to 2505 proteins in 705 species: Archae - 70; Bacteria - 1739; Metazoa - 171; Fungi - 21; Plants - 124; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink).  protein_id AT5G43910.1p  transcript_id AT5G43910.1  protein_id AT5G43910.1p  transcript_id AT5G43910.1  
At5g43920	chr5:017673397	0.0	W/17673397-17674050,17674143-17674244,17674663-17674983,17675063-17675383,17675457-17675630	AT5G43920.1  CDS  gene_syn MRH10.1, MRH10_1  go_component cellular_component|GO:0005575||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G08560.2); Has 41178 Blast hits to 20241 proteins in 613 species: Archae - 58; Bacteria - 5565; Metazoa - 18581; Fungi - 7492; Plants - 3787; Viruses - 0; Other Eukaryotes - 5695 (source: NCBI BLink).  protein_id AT5G43920.1p  transcript_id AT5G43920.1  protein_id AT5G43920.1p  transcript_id AT5G43920.1  
At5g43930	chr5:017677047	0.0	W/17677047-17677144,17677352-17677510,17677589-17677705,17677788-17677872,17678108-17678216,17678312-17678379,17678480-17678605,17678678-17679537,17679649-17679849,17679935-17679995,17680108-17680221,17680301-17680414,17680509-17680577	AT5G43930.1  CDS  gene_syn MRH10.2, MRH10_2  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT1G04140.2); Has 13366 Blast hits to 6347 proteins in 327 species: Archae - 28; Bacteria - 3666; Metazoa - 4805; Fungi - 2605; Plants - 732; Viruses - 0; Other Eukaryotes - 1530 (source: NCBI BLink).  protein_id AT5G43930.1p  transcript_id AT5G43930.1  protein_id AT5G43930.1p  transcript_id AT5G43930.1  
At5g43930	chr5:017677047	0.0	W/17677047-17677144,17677352-17677510,17677589-17677705,17677788-17677872,17678108-17678216,17678312-17678379,17678480-17678605,17678678-17679537,17679649-17679849,17679935-17679995,17680108-17680221,17680301-17680414,17680509-17680577	AT5G43930.2  CDS  gene_syn MRH10.2, MRH10_2  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT1G04140.2); Has 13366 Blast hits to 6347 proteins in 327 species: Archae - 28; Bacteria - 3666; Metazoa - 4805; Fungi - 2605; Plants - 732; Viruses - 0; Other Eukaryotes - 1530 (source: NCBI BLink).  protein_id AT5G43930.2p  transcript_id AT5G43930.2  protein_id AT5G43930.2p  transcript_id AT5G43930.2  
At5g43930	chr5:017677047	0.0	W/17677047-17677144,17677352-17677510,17677589-17677705,17677788-17677872,17678108-17678216,17678312-17678379,17678480-17678605,17678678-17679537,17679649-17679849,17679935-17679995,17680108-17680221,17680301-17680414,17680509-17680577	AT5G43930.3  CDS  gene_syn MRH10.2, MRH10_2  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT1G04140.2); Has 13366 Blast hits to 6347 proteins in 327 species: Archae - 28; Bacteria - 3666; Metazoa - 4805; Fungi - 2605; Plants - 732; Viruses - 0; Other Eukaryotes - 1530 (source: NCBI BLink).  protein_id AT5G43930.3p  transcript_id AT5G43930.3  protein_id AT5G43930.3p  transcript_id AT5G43930.3  
At5g43935	chr5:017682179	0.0	W/17682179-17682564,17682821-17682891,17682946-17683154,17683231-17683446	AT5G43935.1  CDS  gene_syn FLAVONOL SYNTHASE 6, FLS6  gene FLS6  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function flavonol synthase activity|GO:0045431||ISS  product FLS6 (FLAVONOL SYNTHASE 6); flavonol synthase/ oxidoreductase  note FLAVONOL SYNTHASE 6 (FLS6); FUNCTIONS IN: flavonol synthase activity, oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: FLS (FLAVONOL SYNTHASE); flavonol synthase (TAIR:AT5G08640.1); Has 5328 Blast hits to 5310 proteins in 637 species: Archae - 0; Bacteria - 649; Metazoa - 61; Fungi - 411; Plants - 3011; Viruses - 0; Other Eukaryotes - 1196 (source: NCBI BLink).  protein_id AT5G43935.1p  transcript_id AT5G43935.1  protein_id AT5G43935.1p  transcript_id AT5G43935.1  
At5g43940	chr5:017684265	0.0	W/17684265-17684298,17684414-17684550,17684677-17684723,17684812-17685137,17685417-17685499,17685599-17685674,17685761-17685918,17686008-17686169,17686263-17686379	AT5G43940.1  CDS  gene_syn ADH2, ALCOHOL DEHYDROGENASE 2, FALDH, GLUTATHIONE-DEPENDENT FORMALDEHYDE DEHYDROGENASE, GSNOR, HOT5, MRH10.4, MRH10_4, S-NITROSOGLUTATHIONE REDUCTASE, sensitive to hot temperatures 5  gene HOT5  function Encodes a glutathione-dependent formaldehyde dehydrogenase (also known as class III type alcohol dehydrogenase) reduces S-nitrosoglutathione (GSNO), the condensation product of glutathione and NO, that is a naturally occurring NO reservoir and also a reactive nitrogen intermediate. Gene expression is reduced by wounding and induced by salicylic acid. Is required for the acclimation of plants to high temperature and for fertility.  go_component peroxisome|GO:0005777|17951448|IDA  go_process response to wounding|GO:0009611|12753920|IEP  go_process response to salicylic acid stimulus|GO:0009751|12753920|IEP  go_process heat acclimation|GO:0010286|18326829|IMP  go_process formaldehyde metabolic process|GO:0046292|12913179|IGI  go_process formaldehyde metabolic process|GO:0046292|8944774|IDA  go_process seed development|GO:0048316|18326829|IMP  go_function S-(hydroxymethyl)glutathione dehydrogenase activity|GO:0051903|12913179|IDA  go_function S-(hydroxymethyl)glutathione dehydrogenase activity|GO:0051903|8944774|IDA  go_function S-(hydroxymethyl)glutathione dehydrogenase activity|GO:0051903|9215914|IDA  go_function S-nitrosoglutathione reductase activity|GO:0080007|18326829|IMP  product HOT5 (sensitive to hot temperatures 5); S-(hydroxymethyl)glutathione dehydrogenase/ S-nitrosoglutathione reductase  note sensitive to hot temperatures 5 (HOT5); FUNCTIONS IN: S-nitrosoglutathione reductase activity, S-(hydroxymethyl)glutathione dehydrogenase activity; INVOLVED IN: formaldehyde metabolic process, heat acclimation, seed development, response to wounding, response to salicylic acid stimulus; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085), Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase (InterPro:IPR014183); BEST Arabidopsis thaliana protein match is: ADH1 (ALCOHOL DEHYDROGENASE 1); alcohol dehydrogenase (TAIR:AT1G77120.1); Has 23014 Blast hits to 23001 proteins in 1983 species: Archae - 387; Bacteria - 12546; Metazoa - 1276; Fungi - 1762; Plants - 3064; Viruses - 3; Other Eukaryotes - 3976 (source: NCBI BLink).  protein_id AT5G43940.1p  transcript_id AT5G43940.1  protein_id AT5G43940.1p  transcript_id AT5G43940.1  
At5g43950	chr5:017688518	0.0	C/17688518-17688623,17686707-17688301	AT5G43950.1  CDS  gene_syn MRH10.5, MRH10_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946, plant (InterPro:IPR009291); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G04090.1); Has 212 Blast hits to 207 proteins in 61 species: Archae - 0; Bacteria - 12; Metazoa - 13; Fungi - 86; Plants - 98; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G43950.1p  transcript_id AT5G43950.1  protein_id AT5G43950.1p  transcript_id AT5G43950.1  
At5g43960	chr5:017690923	0.0	C/17690923-17691220,17690579-17690826,17690040-17690253,17689799-17689920,17689627-17689695,17689444-17689522,17689154-17689299	AT5G43960.2  CDS  gene_syn MRH10.6, MRH10_6  go_component intracellular|GO:0005622||IEA  go_process transport|GO:0006810||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process nucleocytoplasmic transport|GO:0006913||ISS  go_function RNA binding|GO:0003723||ISS  product nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein  note nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: transport, nucleocytoplasmic transport; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G25150.1); Has 3505 Blast hits to 3427 proteins in 282 species: Archae - 2; Bacteria - 151; Metazoa - 1963; Fungi - 454; Plants - 621; Viruses - 7; Other Eukaryotes - 307 (source: NCBI BLink).  protein_id AT5G43960.2p  transcript_id AT5G43960.2  protein_id AT5G43960.2p  transcript_id AT5G43960.2  
At5g43960	chr5:017691624	0.0	C/17691624-17691653,17691399-17691533,17690923-17691232,17690579-17690826,17690040-17690253,17689799-17689920,17689627-17689695,17689444-17689522,17689154-17689299	AT5G43960.1  CDS  gene_syn MRH10.6, MRH10_6  go_component intracellular|GO:0005622||IEA  go_process transport|GO:0006810||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process nucleocytoplasmic transport|GO:0006913||ISS  go_function RNA binding|GO:0003723||ISS  product nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein  note nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: transport, nucleocytoplasmic transport; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G25150.1); Has 3663 Blast hits to 3545 proteins in 284 species: Archae - 2; Bacteria - 151; Metazoa - 2103; Fungi - 462; Plants - 622; Viruses - 7; Other Eukaryotes - 316 (source: NCBI BLink).  protein_id AT5G43960.1p  transcript_id AT5G43960.1  protein_id AT5G43960.1p  transcript_id AT5G43960.1  
At5g43970	chr5:017692888	0.0	W/17692888-17693187	AT5G43970.1  CDS  gene_syn ATTOM22-V, MRH10.8, MRH10_8, TOM22, TOM22-V, TOM9-2, TRANSLOCASE OF OUTER MEMBRANE 22-V, TRANSLOCASE OUTER MITOCHONDRIAL MEMBRANE 22-V  gene TOM22-V  function Subunit of the TOM complex, a translocase in the outer mitochondrial membrane that selectively allows proteins with a mitochondrial targeting sequence to enter the mitochondrion.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component mitochondrion|GO:0005739|14730085|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component mitochondrial outer membrane translocase complex|GO:0005742|10889230|ISS  go_component plastid|GO:0009536|16618929|IDA  go_process protein targeting to mitochondrion|GO:0006626|10889230|ISS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450|10889230|ISS  product TOM22-V (TRANSLOCASE OF OUTER MEMBRANE 22-V); P-P-bond-hydrolysis-driven protein transmembrane transporter  note TRANSLOCASE OF OUTER MEMBRANE 22-V (TOM22-V); FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein targeting to mitochondrion; LOCATED IN: mitochondrion, plasma membrane, plastid, mitochondrial outer membrane translocase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial import receptor, TOM9-2 subunit, plant (InterPro:IPR017411); BEST Arabidopsis thaliana protein match is: TOM22-I (TRANSLOCASE OF OUTER MEMBRANE 22-I); P-P-bond-hydrolysis-driven protein transmembrane transporter (TAIR:AT1G04070.1); Has 44 Blast hits to 44 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G43970.1p  transcript_id AT5G43970.1  protein_id AT5G43970.1p  transcript_id AT5G43970.1  
At5g43980	chr5:017695687	0.0	C/17695687-17696458,17694817-17694956	AT5G43980.1  CDS  gene_syn MRH10.9, MRH10_9, PDLP1, PDLP1A, PLASMODESMATA-LOCATED PROTEIN 1, PLASMODESMATA-LOCATED PROTEIN 1A  gene PDLP1  function Encodes a plasmodesmal protein that affects the intercellular movement of molecules through the plasmodesmata. The cytoplasmic C-terminal portion of the protein is connected to the apoplastic N-terminal portion of the protein by a single transmembrane domain (TMD). It is transported to the plasmodesmata through the secretory pathway. PDLP1 has two DUF26 domains and a signal peptide, but the proper localization of the protein appears to depend on the TMD.  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_component plasmodesma|GO:0009506|18215111|IDA  go_process plasmodesmata-mediated intercellular transport|GO:0010497|18215111|IGI  product PDLP1 (PLASMODESMATA-LOCATED PROTEIN 1)  note PLASMODESMATA-LOCATED PROTEIN 1 (PDLP1); INVOLVED IN: plasmodesmata-mediated intercellular transport; LOCATED IN: plasmodesma, plant-type cell wall; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: PDLP3 (PLASMODESMATA-LOCATED PROTEIN 3) (TAIR:AT2G33330.1); Has 547 Blast hits to 519 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 547; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G43980.1p  transcript_id AT5G43980.1  protein_id AT5G43980.1p  transcript_id AT5G43980.1  
At5g43990	chr5:017698454	0.0	W/17698454-17698705,17698816-17698872,17698961-17698999,17699084-17699345,17699458-17700575,17700754-17701004,17701141-17701207,17701311-17701361,17701486-17701582,17701705-17701733	AT5G43990.2  CDS  gene_syn MRH10.10, MRH10_10, SDG18, SET DOMAIN PROTEIN 18, SUVR2  gene SUVR2  function Encodes SUVR2, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins. Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity. SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain. Localized to the nucleolus, maybe involved in regulation of rRNA expression.  go_component chloroplast|GO:0009507|18431481|IDA  go_process chromatin modification|GO:0016568||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function histone-lysine N-methyltransferase activity|GO:0018024||IEA  go_component nucleolus|GO:0005730|17020925|IDA  product SUVR2; histone-lysine N-methyltransferase/ zinc ion binding  note SUVR2; FUNCTIONS IN: zinc ion binding, histone-lysine N-methyltransferase activity; INVOLVED IN: chromatin modification; LOCATED IN: nucleolus, chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), WIYLD domain (InterPro:IPR018848), Pre-SET zinc-binding region (InterPro:IPR007728); BEST Arabidopsis thaliana protein match is: SUVR1 (ARABIDOPSIS HOMOLOG OF SU(VAR)3-9 1); histone-lysine N-methyltransferase/ zinc ion binding (TAIR:AT1G04050.1); Has 2325 Blast hits to 2185 proteins in 221 species: Archae - 0; Bacteria - 74; Metazoa - 1376; Fungi - 281; Plants - 400; Viruses - 0; Other Eukaryotes - 194 (source: NCBI BLink).  protein_id AT5G43990.2p  transcript_id AT5G43990.2  protein_id AT5G43990.2p  transcript_id AT5G43990.2  
At5g43990	chr5:017698523	0.0	W/17698523-17698705,17698816-17698872,17698961-17698999,17699084-17699345,17699458-17700575,17700754-17701004,17701141-17701207,17701311-17701361,17701486-17701582,17701705-17701733	AT5G43990.1  CDS  gene_syn MRH10.10, MRH10_10, SDG18, SET DOMAIN PROTEIN 18, SUVR2  gene SUVR2  function Encodes SUVR2, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins. Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity. SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain. Localized to the nucleolus, maybe involved in regulation of rRNA expression.  go_component chloroplast|GO:0009507|18431481|IDA  go_process chromatin modification|GO:0016568||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function histone-lysine N-methyltransferase activity|GO:0018024||IEA  go_component nucleolus|GO:0005730|17020925|IDA  product SUVR2; histone-lysine N-methyltransferase/ zinc ion binding  note SUVR2; FUNCTIONS IN: zinc ion binding, histone-lysine N-methyltransferase activity; INVOLVED IN: chromatin modification; LOCATED IN: nucleolus, chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), WIYLD domain (InterPro:IPR018848), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Pre-SET zinc-binding region (InterPro:IPR007728); BEST Arabidopsis thaliana protein match is: SUVR1 (ARABIDOPSIS HOMOLOG OF SU(VAR)3-9 1); histone-lysine N-methyltransferase/ zinc ion binding (TAIR:AT1G04050.1); Has 2327 Blast hits to 2187 proteins in 221 species: Archae - 0; Bacteria - 74; Metazoa - 1378; Fungi - 281; Plants - 400; Viruses - 0; Other Eukaryotes - 194 (source: NCBI BLink).  protein_id AT5G43990.1p  transcript_id AT5G43990.1  protein_id AT5G43990.1p  transcript_id AT5G43990.1  
At5g43990	chr5:017698523	0.0	W/17698523-17698705,17698816-17698872,17698961-17698999,17699084-17699345,17699458-17700575,17700754-17701004,17701141-17701207,17701311-17701361,17701486-17701582,17701705-17701733	AT5G43990.3  CDS  gene_syn MRH10.10, MRH10_10, SDG18, SET DOMAIN PROTEIN 18, SUVR2  gene SUVR2  function Encodes SUVR2, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins. Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity. SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain. Localized to the nucleolus, maybe involved in regulation of rRNA expression.  go_component chloroplast|GO:0009507|18431481|IDA  go_process chromatin modification|GO:0016568||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function histone-lysine N-methyltransferase activity|GO:0018024||IEA  go_component nucleolus|GO:0005730|17020925|IDA  product SUVR2; histone-lysine N-methyltransferase/ zinc ion binding  note SUVR2; FUNCTIONS IN: zinc ion binding, histone-lysine N-methyltransferase activity; INVOLVED IN: chromatin modification; LOCATED IN: nucleolus, chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), WIYLD domain (InterPro:IPR018848), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Pre-SET zinc-binding region (InterPro:IPR007728); BEST Arabidopsis thaliana protein match is: SUVR1 (ARABIDOPSIS HOMOLOG OF SU(VAR)3-9 1); histone-lysine N-methyltransferase/ zinc ion binding (TAIR:AT1G04050.1); Has 2327 Blast hits to 2187 proteins in 221 species: Archae - 0; Bacteria - 74; Metazoa - 1378; Fungi - 281; Plants - 400; Viruses - 0; Other Eukaryotes - 194 (source: NCBI BLink).  protein_id AT5G43990.3p  transcript_id AT5G43990.3  protein_id AT5G43990.3p  transcript_id AT5G43990.3  
At5g43990	chr5:017698523	0.0	W/17698523-17698705,17698816-17698872,17698961-17698999,17699084-17699345,17699458-17700575,17700754-17701004,17701141-17701207,17701311-17701361,17701486-17701582,17701705-17701733	AT5G43990.4  CDS  gene_syn MRH10.10, MRH10_10, SDG18, SET DOMAIN PROTEIN 18, SUVR2  gene SUVR2  function Encodes SUVR2, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins. Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity. SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain. Localized to the nucleolus, maybe involved in regulation of rRNA expression.  go_component chloroplast|GO:0009507|18431481|IDA  go_process chromatin modification|GO:0016568||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function histone-lysine N-methyltransferase activity|GO:0018024||IEA  go_component nucleolus|GO:0005730|17020925|IDA  product SUVR2; histone-lysine N-methyltransferase/ zinc ion binding  note SUVR2; FUNCTIONS IN: zinc ion binding, histone-lysine N-methyltransferase activity; INVOLVED IN: chromatin modification; LOCATED IN: nucleolus, chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), WIYLD domain (InterPro:IPR018848), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Pre-SET zinc-binding region (InterPro:IPR007728); BEST Arabidopsis thaliana protein match is: SUVR1 (ARABIDOPSIS HOMOLOG OF SU(VAR)3-9 1); histone-lysine N-methyltransferase/ zinc ion binding (TAIR:AT1G04050.1); Has 2327 Blast hits to 2187 proteins in 221 species: Archae - 0; Bacteria - 74; Metazoa - 1378; Fungi - 281; Plants - 400; Viruses - 0; Other Eukaryotes - 194 (source: NCBI BLink).  protein_id AT5G43990.4p  transcript_id AT5G43990.4  protein_id AT5G43990.4p  transcript_id AT5G43990.4  
At5g44000	chr5:017703171	0.0	C/17703171-17703934,17702508-17702757,17702231-17702416	AT5G44000.1  CDS  gene_syn MRH10.11, MRH10_11  go_component chloroplast|GO:0009507||IEA  go_function glutathione transferase activity|GO:0004364||ISS  product glutathione S-transferase C-terminal domain-containing protein  note glutathione S-transferase C-terminal domain-containing protein; FUNCTIONS IN: glutathione transferase activity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19880.1); Has 1652 Blast hits to 1652 proteins in 488 species: Archae - 12; Bacteria - 905; Metazoa - 22; Fungi - 164; Plants - 61; Viruses - 0; Other Eukaryotes - 488 (source: NCBI BLink).  protein_id AT5G44000.1p  transcript_id AT5G44000.1  protein_id AT5G44000.1p  transcript_id AT5G44000.1  
At5g44005	chr5:017705209	0.0	C/17705209-17705493	AT5G44005.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G44005.1p  transcript_id AT5G44005.1  protein_id AT5G44005.1p  transcript_id AT5G44005.1  
At5g44010	chr5:017709144	0.0	C/17709144-17709199,17708852-17708942,17708478-17708761,17708197-17708398,17707915-17708085,17707720-17707820,17707519-17707587,17707380-17707420,17707224-17707282	AT5G44010.1  CDS  gene_syn MRH10.12, MRH10_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; Has 12 Blast hits to 12 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G44010.1p  transcript_id AT5G44010.1  protein_id AT5G44010.1p  transcript_id AT5G44010.1  
At5g44020	chr5:017712433	0.0	W/17712433-17712863,17713111-17713320,17713869-17714046	AT5G44020.1  CDS  gene_syn MRH10.13, MRH10_13  go_component vacuole|GO:0005773|15539469|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function acid phosphatase activity|GO:0003993||IEA  go_process biological_process|GO:0008150||ND  go_function acid phosphatase activity|GO:0003993||ISS  product acid phosphatase class B family protein  note acid phosphatase class B family protein; FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, vacuole, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519), Vegetative storage protein/acid phosphatase (InterPro:IPR014403), Acid phosphatase, plant (InterPro:IPR010028); BEST Arabidopsis thaliana protein match is: acid phosphatase class B family protein (TAIR:AT1G04040.1); Has 429 Blast hits to 429 proteins in 91 species: Archae - 0; Bacteria - 137; Metazoa - 0; Fungi - 0; Plants - 232; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT5G44020.1p  transcript_id AT5G44020.1  protein_id AT5G44020.1p  transcript_id AT5G44020.1  
At5g44030	chr5:017714713	0.0	W/17714713-17714748,17714858-17715050,17715131-17715249,17715337-17715406,17715499-17715655,17715739-17716351,17716425-17716562,17716657-17716782,17716862-17717074,17717146-17717691,17718253-17718603,17718977-17719564	AT5G44030.1  CDS  gene_syn CELLULOSE SYNTHASE A4, CESA4, IRREGULAR XYLEM 5, IRX5, MRH10.14, MRH10_14, NWS2  gene CESA4  function Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling.  go_component membrane|GO:0016020||IEA  go_process plant-type cell wall biogenesis|GO:0009832|8901635|TAS  go_process secondary cell wall biogenesis|GO:0009834|12538856|IMP  go_process salicylic acid mediated signaling pathway|GO:0009863|17351116|IGI  go_process jasmonic acid mediated signaling pathway|GO:0009867|17351116|IGI  go_process ethylene mediated signaling pathway|GO:0009873|17351116|IGI  go_process cellulose biosynthetic process|GO:0030244|12538856|IMP  go_process cellulose biosynthetic process|GO:0030244|8901635|TAS  go_process defense response to bacterium|GO:0042742|17351116|IMP  go_process defense response to fungus|GO:0050832|17351116|IMP  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  product CESA4 (CELLULOSE SYNTHASE A4); cellulose synthase/ transferase, transferring glycosyl groups  note CELLULOSE SYNTHASE A4 (CESA4); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: in 8 processes; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1); cellulose synthase/ transferase, transferring glycosyl groups (TAIR:AT5G05170.1); Has 2154 Blast hits to 1897 proteins in 424 species: Archae - 4; Bacteria - 649; Metazoa - 1; Fungi - 23; Plants - 1403; Viruses - 7; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT5G44030.1p  transcript_id AT5G44030.1  protein_id AT5G44030.1p  transcript_id AT5G44030.1  
At5g44040	chr5:017721265	0.0	C/17721265-17721348,17720964-17721157,17719896-17720868	AT5G44040.1  CDS  gene_syn MRH10.15, MRH10_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G04030.1); Has 753 Blast hits to 701 proteins in 137 species: Archae - 2; Bacteria - 60; Metazoa - 161; Fungi - 91; Plants - 57; Viruses - 6; Other Eukaryotes - 376 (source: NCBI BLink).  protein_id AT5G44040.1p  transcript_id AT5G44040.1  protein_id AT5G44040.1p  transcript_id AT5G44040.1  
At5g44050	chr5:017722484	0.0	W/17722484-17722768,17722856-17723143,17724323-17724576,17724673-17724759,17724883-17724939,17725412-17725650,17725747-17725865,17725951-17726040,17726153-17726209	AT5G44050.1  CDS  gene_syn MRH10.16, MRH10_16  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020|11152613|ISS  go_function transporter activity|GO:0005215||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: antiporter/ drug transporter (TAIR:AT5G10420.1); Has 5225 Blast hits to 5158 proteins in 1031 species: Archae - 116; Bacteria - 3318; Metazoa - 121; Fungi - 208; Plants - 715; Viruses - 0; Other Eukaryotes - 747 (source: NCBI BLink).  protein_id AT5G44050.1p  transcript_id AT5G44050.1  protein_id AT5G44050.1p  transcript_id AT5G44050.1  
At5g44060	chr5:017731209	0.0	W/17731209-17731661	AT5G44060.1  CDS  gene_syn MRH10.17, MRH10_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G04000.1); Has 36 Blast hits to 36 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G44060.1p  transcript_id AT5G44060.1  protein_id AT5G44060.1p  transcript_id AT5G44060.1  
At5g44065	chr5:017733485	0.0	W/17733485-17733712	AT5G44065.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G44065.1p  transcript_id AT5G44065.1  protein_id AT5G44065.1p  transcript_id AT5G44065.1  
At5g44070	chr5:017734876	0.0	W/17734876-17734950,17735382-17735538,17735618-17735856,17735941-17736104,17736204-17736255,17736450-17736677,17736780-17736969,17737059-17737324,17737586-17737672	AT5G44070.1  CDS  gene_syn ARA8, ARABIDOPSIS THALIANA PHYTOCHELATIN SYNTHASE 1, ATPCS1, CAD1, CADMIUM SENSITIVE 1, MRH10.18, MRH10_18, PCS1, PHYTOCHELATIN SYNTHASE, PHYTOCHELATIN SYNTHASE 1  gene CAD1  function Phytochelatin synthase gene confers tolerance to cadmium ions. Catalyzes phytochelatin (PC) synthesis from glutathione (GSH) in the presence of Cd2+, Zn2+, Cu2+ and Fe3+, but not by Co2+ or Ni2+.  go_component cellular_component|GO:0005575||ND  go_process indole glucosinolate catabolic process|GO:0042344|19095898|IMP  go_process defense response to bacterium|GO:0042742|19095898|IMP  go_process response to arsenic|GO:0046685|17390107|IDA  go_process response to cadmium ion|GO:0046686|17390107|IDA  go_process response to cadmium ion|GO:0046686|7770517|IMP  go_process phytochelatin biosynthetic process|GO:0046938|17253989|IMP  go_process phytochelatin biosynthetic process|GO:0046938||ISS  go_process callose deposition in cell wall during defense response|GO:0052544|19095898|IMP  go_function copper ion binding|GO:0005507|7770517|IDA  go_function glutathione gamma-glutamylcysteinyltransferase activity|GO:0016756|10368185|IMP  go_function glutathione gamma-glutamylcysteinyltransferase activity|GO:0016756|16489135|IDA  go_function glutathione gamma-glutamylcysteinyltransferase activity|GO:0016756|17253989|IMP  go_function cadmium ion binding|GO:0046870|7770518|IDA  product CAD1 (CADMIUM SENSITIVE 1); cadmium ion binding / copper ion binding / glutathione gamma-glutamylcysteinyltransferase  note CADMIUM SENSITIVE 1 (CAD1); FUNCTIONS IN: cadmium ion binding, copper ion binding, glutathione gamma-glutamylcysteinyltransferase activity; INVOLVED IN: in 6 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phytochelatin synthase, C-terminal (InterPro:IPR015407), Phytochelatin synthase (InterPro:IPR007719); BEST Arabidopsis thaliana protein match is: ATPCS2 (phytochelatin synthase 2); glutathione gamma-glutamylcysteinyltransferase (TAIR:AT1G03980.1); Has 232 Blast hits to 232 proteins in 107 species: Archae - 0; Bacteria - 105; Metazoa - 28; Fungi - 5; Plants - 76; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT5G44070.1p  transcript_id AT5G44070.1  protein_id AT5G44070.1p  transcript_id AT5G44070.1  
At5g44080	chr5:017738787	0.0	C/17738787-17739734	AT5G44080.1  CDS  gene_syn MRH10.19, MRH10_19  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  product bZIP transcription factor family protein  note bZIP transcription factor family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: GBF4; DNA binding / sequence-specific DNA binding / transcription factor (TAIR:AT1G03970.1); Has 730 Blast hits to 730 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 209; Fungi - 2; Plants - 496; Viruses - 1; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT5G44080.1p  transcript_id AT5G44080.1  protein_id AT5G44080.1p  transcript_id AT5G44080.1  
At5g44090	chr5:017747760	0.0	C/17747760-17747909,17747012-17747251,17746555-17746660,17746353-17746452,17745796-17745901,17745586-17745676,17745094-17745235,17744649-17744796,17744427-17744536,17743839-17743995,17743612-17743737,17743264-17743404	AT5G44090.1  CDS  go_function calcium ion binding|GO:0005509||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein, putative / protein phosphatase 2A 62 kDa B   regulatory subunit, putative  note calcium-binding EF hand family protein, putative / protein phosphatase 2A 62 kDa B   regulatory subunit, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT1G03960.1); Has 497 Blast hits to 496 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 279; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT5G44090.1p  transcript_id AT5G44090.1  protein_id AT5G44090.1p  transcript_id AT5G44090.1  
At5g44100	chr5:017752210	0.0	C/17752210-17752285,17752074-17752114,17751782-17751851,17751512-17751660,17751314-17751409,17751136-17751206,17750967-17751028,17750818-17750881,17750642-17750726,17750418-17750544,17750235-17750320,17750079-17750142,17749845-17749978,17749454-17749759	AT5G44100.1  CDS  gene_syn Casein Kinase I-like 7, MLN1.2, MLN1_2, ckl7  gene ckl7  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product ckl7 (Casein Kinase I-like 7); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note Casein Kinase I-like 7 (ckl7); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ADK1 (dual specificity kinase 1); kinase/ protein serine/threonine/tyrosine kinase (TAIR:AT1G03930.1); Has 51216 Blast hits to 46849 proteins in 1437 species: Archae - 9; Bacteria - 5608; Metazoa - 21325; Fungi - 4484; Plants - 6390; Viruses - 413; Other Eukaryotes - 12987 (source: NCBI BLink).  protein_id AT5G44100.1p  transcript_id AT5G44100.1  protein_id AT5G44100.1p  transcript_id AT5G44100.1  
At5g44110	chr5:017755522	0.0	C/17755522-17755672,17755084-17755244,17754948-17754999,17754732-17754868,17754561-17754647,17754222-17754482	AT5G44110.1  CDS  gene_syn ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN, ATNAP2, ATPOP1, MLN1.3, MLN1_3, POP1  gene POP1  function Encodes a member of the NAP subfamily of ABC transporters.  go_process response to red light|GO:0010114|17076805|IEP  go_process response to far red light|GO:0010218|17076805|IEP  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  product POP1; transporter  note POP1; FUNCTIONS IN: transporter activity; INVOLVED IN: response to red light, response to far red light; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT1G03905.1); Has 104457 Blast hits to 100261 proteins in 2077 species: Archae - 2241; Bacteria - 80142; Metazoa - 1592; Fungi - 918; Plants - 872; Viruses - 4; Other Eukaryotes - 18688 (source: NCBI BLink).  protein_id AT5G44110.1p  transcript_id AT5G44110.1  protein_id AT5G44110.1p  transcript_id AT5G44110.1  
At5g44110	chr5:017755522	0.0	C/17755522-17755672,17755084-17755244,17754948-17754999,17754732-17754868,17754561-17754647,17754424-17754480	AT5G44110.2  CDS  gene_syn ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN, ATNAP2, ATPOP1, MLN1.3, MLN1_3, POP1  gene POP1  function Encodes a member of the NAP subfamily of ABC transporters.  go_process response to red light|GO:0010114|17076805|IEP  go_process response to far red light|GO:0010218|17076805|IEP  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  product POP1; transporter  note POP1; FUNCTIONS IN: transporter activity; INVOLVED IN: response to red light, response to far red light; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ABC transporter-like (InterPro:IPR003439); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT1G03905.1); Has 45454 Blast hits to 44366 proteins in 1858 species: Archae - 716; Bacteria - 35079; Metazoa - 834; Fungi - 687; Plants - 615; Viruses - 2; Other Eukaryotes - 7521 (source: NCBI BLink).  protein_id AT5G44110.2p  transcript_id AT5G44110.2  protein_id AT5G44110.2p  transcript_id AT5G44110.2  
At5g44110	chr5:017755522	0.0	C/17755522-17755672,17755084-17755244,17754948-17754999,17754739-17754868,17754561-17754647,17754392-17754482	AT5G44110.3  CDS  gene_syn ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN, ATNAP2, ATPOP1, MLN1.3, MLN1_3, POP1  gene POP1  function Encodes a member of the NAP subfamily of ABC transporters.  go_process response to red light|GO:0010114|17076805|IEP  go_process response to far red light|GO:0010218|17076805|IEP  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  product POP1; transporter  note POP1; FUNCTIONS IN: transporter activity; INVOLVED IN: response to red light, response to far red light; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT1G03905.1); Has 5451 Blast hits to 5433 proteins in 1170 species: Archae - 54; Bacteria - 3903; Metazoa - 218; Fungi - 244; Plants - 149; Viruses - 2; Other Eukaryotes - 881 (source: NCBI BLink).  protein_id AT5G44110.3p  transcript_id AT5G44110.3  protein_id AT5G44110.3p  transcript_id AT5G44110.3  
At5g44120	chr5:017756980	0.0	C/17756980-17757432,17756460-17756864	AT5G44120.1  CDS  gene_syn 12S STORAGE PROTEIN, ATCRA1, CRA1, CRU1, CRUCIFERINA, MLN1.4, MLN1_4  gene CRA1  function Encodes a 12S seed storage protein. The Landsberg erecta genome contains another copy of 12S globulin gene, CRA2, which is located tandemly with CRA1. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.  go_process response to abscisic acid stimulus|GO:0009737|18768909|IEP  go_function nutrient reservoir activity|GO:0045735||ISS  product CRA1 (CRUCIFERINA); nutrient reservoir  note CRUCIFERINA (CRA1); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: response to abscisic acid stimulus; EXPRESSED IN: guard cell, seed; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), 11-S plant seed storage protein (InterPro:IPR006044); BEST Arabidopsis thaliana protein match is: CRU2 (CRUCIFERIN 2); nutrient reservoir (TAIR:AT1G03880.1); Has 702 Blast hits to 681 proteins in 120 species: Archae - 0; Bacteria - 49; Metazoa - 2; Fungi - 0; Plants - 651; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G44120.1p  transcript_id AT5G44120.1  protein_id AT5G44120.1p  transcript_id AT5G44120.1  
At5g44120	chr5:017757557	0.0	C/17757557-17757811,17756980-17757426,17756460-17756864	AT5G44120.2  CDS  gene_syn 12S STORAGE PROTEIN, ATCRA1, CRA1, CRU1, CRUCIFERINA, MLN1.4, MLN1_4  gene CRA1  function Encodes a 12S seed storage protein. The Landsberg erecta genome contains another copy of 12S globulin gene, CRA2, which is located tandemly with CRA1. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.  go_process response to abscisic acid stimulus|GO:0009737|18768909|IEP  go_function nutrient reservoir activity|GO:0045735||ISS  product CRA1 (CRUCIFERINA); nutrient reservoir  note CRUCIFERINA (CRA1); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: response to abscisic acid stimulus; EXPRESSED IN: guard cell, seed; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), 11-S plant seed storage protein (InterPro:IPR006044); BEST Arabidopsis thaliana protein match is: CRU2 (CRUCIFERIN 2); nutrient reservoir (TAIR:AT1G03880.1); Has 741 Blast hits to 707 proteins in 123 species: Archae - 0; Bacteria - 49; Metazoa - 2; Fungi - 0; Plants - 690; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G44120.2p  transcript_id AT5G44120.2  protein_id AT5G44120.2p  transcript_id AT5G44120.2  
At5g44120	chr5:017757946	0.0	C/17757946-17758246,17757557-17757822,17756980-17757426,17756460-17756864	AT5G44120.3  CDS  gene_syn 12S STORAGE PROTEIN, ATCRA1, CRA1, CRU1, CRUCIFERINA, MLN1.4, MLN1_4  gene CRA1  function Encodes a 12S seed storage protein. The Landsberg erecta genome contains another copy of 12S globulin gene, CRA2, which is located tandemly with CRA1. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.  go_component endomembrane system|GO:0012505||IEA  go_process response to abscisic acid stimulus|GO:0009737|18768909|IEP  go_function nutrient reservoir activity|GO:0045735||ISS  product CRA1 (CRUCIFERINA); nutrient reservoir  note CRUCIFERINA (CRA1); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: guard cell, seed; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), 11-S plant seed storage protein (InterPro:IPR006044); BEST Arabidopsis thaliana protein match is: CRU2 (CRUCIFERIN 2); nutrient reservoir (TAIR:AT1G03880.1); Has 757 Blast hits to 718 proteins in 124 species: Archae - 0; Bacteria - 49; Metazoa - 2; Fungi - 0; Plants - 706; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G44120.3p  transcript_id AT5G44120.3  protein_id AT5G44120.3p  transcript_id AT5G44120.3  
At5g44130	chr5:017761128	0.0	W/17761128-17761871	AT5G44130.1  CDS  gene_syn FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13 PRECURSOR, FLA13, MLN1.5, MLN1_5  gene FLA13  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function molecular_function|GO:0003674||ND  product FLA13 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13 PRECURSOR)  note FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13 PRECURSOR (FLA13); FUNCTIONS IN: molecular_function unknown; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FLA9 (FASCICLIN-LIKE ARABINOOGALACTAN 9) (TAIR:AT1G03870.1); Has 629 Blast hits to 625 proteins in 115 species: Archae - 8; Bacteria - 154; Metazoa - 9; Fungi - 0; Plants - 437; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT5G44130.1p  transcript_id AT5G44130.1  protein_id AT5G44130.1p  transcript_id AT5G44130.1  
At5g44140	chr5:017762491	0.0	W/17762491-17762665,17762724-17762836,17762925-17763095,17763169-17763381,17763465-17763629	AT5G44140.1  CDS  gene_syn ATPHB7, MLN1.6, MLN1_6, PROHIBITIN 7  gene ATPHB7  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|17883375|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process biological_process|GO:0008150||ND  product ATPHB7 (PROHIBITIN 7)  note PROHIBITIN 7 (ATPHB7); INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, respiratory chain complex I, membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Prohibitin (InterPro:IPR000163), Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: ATPHB2 (PROHIBITIN 2) (TAIR:AT1G03860.3); Has 3142 Blast hits to 3140 proteins in 851 species: Archae - 125; Bacteria - 1423; Metazoa - 425; Fungi - 215; Plants - 147; Viruses - 13; Other Eukaryotes - 794 (source: NCBI BLink).  protein_id AT5G44140.1p  transcript_id AT5G44140.1  protein_id AT5G44140.1p  transcript_id AT5G44140.1  
At5g44150	chr5:017764735	0.0	C/17764735-17765101,17764543-17764658,17764352-17764459,17763797-17764273	AT5G44150.1  CDS  gene_syn MLN1.7, MLN1_7  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; Has 22 Blast hits to 22 proteins in 9 species: Archae - 0; Bacteria - 4; Metazoa - 5; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G44150.1p  transcript_id AT5G44150.1  protein_id AT5G44150.1p  transcript_id AT5G44150.1  
At5g44160	chr5:017773091	0.0	W/17773091-17773229,17773658-17774054,17774649-17775513	AT5G44160.1  CDS  gene_syn MLN1.8, MLN1_8, NUC, nutcracker  gene NUC  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product NUC (nutcracker); nucleic acid binding / transcription factor/ zinc ion binding  note nutcracker (NUC); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: primary root apical meristem, stem vascular system, embryo, root, embryonic root; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: MGP (Magpie); nucleic acid binding / protein binding / transcription factor/ zinc ion binding (TAIR:AT1G03840.1); Has 44629 Blast hits to 16403 proteins in 275 species: Archae - 0; Bacteria - 0; Metazoa - 42804; Fungi - 180; Plants - 406; Viruses - 0; Other Eukaryotes - 1239 (source: NCBI BLink).  protein_id AT5G44160.1p  transcript_id AT5G44160.1  protein_id AT5G44160.1p  transcript_id AT5G44160.1  
At5g44170	chr5:017780394	0.0	W/17780394-17781098	AT5G44170.1  CDS  gene_syn MLN1.9, MLN1_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Expressed protein (TAIR:AT1G08125.1); Has 565 Blast hits to 565 proteins in 102 species: Archae - 0; Bacteria - 6; Metazoa - 261; Fungi - 146; Plants - 99; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT5G44170.1p  transcript_id AT5G44170.1  protein_id AT5G44170.1p  transcript_id AT5G44170.1  
At5g44180	chr5:017783172	0.0	W/17783172-17783283,17783375-17783788,17783869-17783948,17784049-17784429,17784524-17784613,17784695-17784859,17784946-17785168,17785275-17785375,17785512-17785598,17785679-17785831,17785926-17786081,17786156-17786365,17786454-17787104,17787192-17787722,17787815-17788375,17788557-17788661,17788741-17788992,17789060-17789872	AT5G44180.1  CDS  gene_syn MLN1.10, MLN1_10  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product homeobox transcription factor, putative  note homeobox transcription factor, putative; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DDT superfamily (InterPro:IPR018501), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), DDT subgroup (InterPro:IPR018500), DDT family (InterPro:IPR004022), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: HB-1 (homeobox-1); transcription factor (TAIR:AT1G28420.1); Has 62016 Blast hits to 31779 proteins in 1439 species: Archae - 190; Bacteria - 4988; Metazoa - 32002; Fungi - 4382; Plants - 1705; Viruses - 361; Other Eukaryotes - 18388 (source: NCBI BLink).  protein_id AT5G44180.1p  transcript_id AT5G44180.1  protein_id AT5G44180.1p  transcript_id AT5G44180.1  
At5g44190	chr5:017798435	0.0	W/17798435-17798881,17799263-17799403,17799603-17799938,17800292-17800381,17800501-17800647	AT5G44190.1  CDS  gene_syn ATGLK2, GBF S PRO-RICH REGION-INTERACTING FACTOR 2, GLK2, GOLDEN2-LIKE 2, GPRI2, MLN1.11, MLN1_11  gene GLK2  function Encodes GLK2, Golden2-like 2, one of a pair of partially redundant nuclear transcription factors that regulate chloroplast development in a cell-autonomous manner. GLK1, Golden2-like 1, is encoded by At2g20570. GLK1 and GLK2 regulate the expression of the photosynthetic apparatus.  go_component nucleus|GO:0005634||ISS  go_process chloroplast organization|GO:0009658|18643989|IMP  go_process negative regulation of flower development|GO:0009910|18643989|IGI  go_process regulation of chlorophyll biosynthetic process|GO:0010380|19376934|IGI  go_process positive regulation of gene-specific transcription|GO:0043193|11828027|IDA  go_process positive regulation of gene-specific transcription|GO:0043193|19376934|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription regulator activity|GO:0030528|11828027|IDA  product GLK2 (GOLDEN2-LIKE 2); DNA binding / transcription factor/ transcription regulator  note GOLDEN2-LIKE 2 (GLK2); FUNCTIONS IN: transcription factor activity, transcription regulator activity, DNA binding; INVOLVED IN: chloroplast organization, positive regulation of transcription, negative regulation of flower development; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: GPRI1 (GBF S PRO-RICH REGION-INTERACTING FACTOR 1); transcription factor/ transcription regulator (TAIR:AT2G20570.1); Has 910 Blast hits to 910 proteins in 44 species: Archae - 0; Bacteria - 4; Metazoa - 7; Fungi - 3; Plants - 874; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT5G44190.1p  transcript_id AT5G44190.1  protein_id AT5G44190.1p  transcript_id AT5G44190.1  
At5g44200	chr5:017803858	0.0	C/17803858-17803875,17803428-17803651,17803205-17803343,17803083-17803116,17802838-17802948,17802437-17802502,17802242-17802348,17802062-17802136	AT5G44200.1  CDS  gene_syn ATCBP20, CAP-BINDING PROTEIN 20, CBP20, MLN1.12, MLN1_12  gene CBP20  function Encodes a nuclear cap-binding protein that forms a heterodimeric complex with ABH1 (ATCBP80) and is likely to participate in RNA metabolism. Its mRNA is ubiquitously expressed.Loss of function mutations suggest a role in processing of pri-miRNA and mRNA splicing.  go_component mRNA cap binding complex|GO:0005845|12427994|TAS  go_process RNA splicing, via endonucleolytic cleavage and ligation|GO:0000394|18550839|IMP  go_process RNA metabolic process|GO:0016070|11867224|TAS  go_process primary microRNA processing|GO:0031053|18550839|IMP  go_function RNA cap binding|GO:0000339|11525733|IDA  go_function RNA binding|GO:0003723||ISS  product CBP20 (CAP-BINDING PROTEIN 20); RNA binding / RNA cap binding  note CAP-BINDING PROTEIN 20 (CBP20); FUNCTIONS IN: RNA binding, RNA cap binding; INVOLVED IN: RNA splicing, via endonucleolytic cleavage and ligation, RNA metabolic process, primary microRNA processing; LOCATED IN: mRNA cap binding complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein, putative (TAIR:AT3G46020.1); Has 8628 Blast hits to 8298 proteins in 460 species: Archae - 6; Bacteria - 555; Metazoa - 4284; Fungi - 1287; Plants - 1556; Viruses - 0; Other Eukaryotes - 940 (source: NCBI BLink).  protein_id AT5G44200.1p  transcript_id AT5G44200.1  protein_id AT5G44200.1p  transcript_id AT5G44200.1  
At5g44200	chr5:017803858	0.0	C/17803858-17803875,17803428-17803651,17803205-17803343,17803083-17803116,17802838-17802948,17802437-17802502,17802242-17802348,17802062-17802136	AT5G44200.2  CDS  gene_syn ATCBP20, CAP-BINDING PROTEIN 20, CBP20, MLN1.12, MLN1_12  gene CBP20  function Encodes a nuclear cap-binding protein that forms a heterodimeric complex with ABH1 (ATCBP80) and is likely to participate in RNA metabolism. Its mRNA is ubiquitously expressed.Loss of function mutations suggest a role in processing of pri-miRNA and mRNA splicing.  go_component mRNA cap binding complex|GO:0005845|12427994|TAS  go_process RNA splicing, via endonucleolytic cleavage and ligation|GO:0000394|18550839|IMP  go_process RNA metabolic process|GO:0016070|11867224|TAS  go_process primary microRNA processing|GO:0031053|18550839|IMP  go_function RNA cap binding|GO:0000339|11525733|IDA  go_function RNA binding|GO:0003723||ISS  product CBP20 (CAP-BINDING PROTEIN 20); RNA binding / RNA cap binding  note CAP-BINDING PROTEIN 20 (CBP20); FUNCTIONS IN: RNA binding, RNA cap binding; INVOLVED IN: RNA splicing, via endonucleolytic cleavage and ligation, RNA metabolic process, primary microRNA processing; LOCATED IN: mRNA cap binding complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein, putative (TAIR:AT3G46020.1); Has 8628 Blast hits to 8298 proteins in 460 species: Archae - 6; Bacteria - 555; Metazoa - 4284; Fungi - 1287; Plants - 1556; Viruses - 0; Other Eukaryotes - 940 (source: NCBI BLink).  protein_id AT5G44200.2p  transcript_id AT5G44200.2  protein_id AT5G44200.2p  transcript_id AT5G44200.2  
At5g44210	chr5:017806742	0.0	W/17806742-17807344	AT5G44210.1  CDS  gene_syn ATERF-9, ATERF9, ERF DOMAIN PROTEIN 9, ERF DOMAIN PROTEIN- 9, ERF9, MLN1.14, MLN1_14  gene ERF9  function encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-9). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.  go_component membrane|GO:0016020|17432890|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|11487705|TAS  go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS  go_function DNA binding|GO:0003677|11487705|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11487705|TAS  go_function transcription factor activity|GO:0003700|9687012|TAS  go_function transcription repressor activity|GO:0016564|11487705|TAS  product ERF9 (ERF DOMAIN PROTEIN 9); DNA binding / transcription factor/ transcription repressor  note ERF DOMAIN PROTEIN 9 (ERF9); FUNCTIONS IN: transcription repressor activity, transcription factor activity, DNA binding; INVOLVED IN: ethylene mediated signaling pathway, regulation of transcription, DNA-dependent; LOCATED IN: membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ERF10 (ERF DOMAIN PROTEIN 10); DNA binding / transcription factor/ transcription repressor (TAIR:AT1G03800.1); Has 4018 Blast hits to 3747 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4000; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT5G44210.1p  transcript_id AT5G44210.1  protein_id AT5G44210.1p  transcript_id AT5G44210.1  
At5g44220	chr5:017810477	0.0	W/17810477-17811364	AT5G44220.1  CDS  gene_syn MLN1.15, MLN1_15  product F-box family protein  note F-box family protein; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G38870.1); Has 545 Blast hits to 533 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 545; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G44220.1p  transcript_id AT5G44220.1  protein_id AT5G44220.1p  transcript_id AT5G44220.1  
At5g44230	chr5:017814336	0.0	W/17814336-17816309	AT5G44230.1  CDS  gene_syn MLN1.16, MLN1_16  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; EXPRESSED IN: embryo, leaf; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G29760.1); Has 12661 Blast hits to 4960 proteins in 148 species: Archae - 0; Bacteria - 6; Metazoa - 41; Fungi - 47; Plants - 12281; Viruses - 0; Other Eukaryotes - 286 (source: NCBI BLink).  protein_id AT5G44230.1p  transcript_id AT5G44230.1  protein_id AT5G44230.1p  transcript_id AT5G44230.1  
At5g44240	chr5:017817619	0.0	W/17817619-17817743,17817840-17818053,17818143-17818259,17818370-17818462,17818553-17818727,17818860-17819026,17819140-17819244,17819487-17819584,17819685-17819827,17819990-17820086,17820209-17820318,17820413-17820577,17820676-17820830,17820954-17821034,17821140-17821260,17821359-17821465,17821555-17821686,17821799-17821952,17822045-17822162,17822243-17822416,17822519-17822570,17822755-17822882,17823015-17823165,17823257-17823598	AT5G44240.1  CDS  gene_syn MLN1.17, MLN1_17  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process ATP biosynthetic process|GO:0006754||IEA  go_process metabolic process|GO:0008152||IEA  go_process phospholipid transport|GO:0015914||IEA  go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662||ISS  product haloacid dehalogenase-like hydrolase family protein  note haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: metabolic process, phospholipid transport, ATP biosynthetic process; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, phospholipid-translocating, flippase (InterPro:IPR006539), ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: ALA1 (aminophospholipid ATPase1); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism (TAIR:AT5G04930.1); Has 9949 Blast hits to 8972 proteins in 1138 species: Archae - 116; Bacteria - 2826; Metazoa - 3155; Fungi - 1606; Plants - 562; Viruses - 3; Other Eukaryotes - 1681 (source: NCBI BLink).  protein_id AT5G44240.1p  transcript_id AT5G44240.1  protein_id AT5G44240.1p  transcript_id AT5G44240.1  
At5g44250	chr5:017825136	0.0	C/17825136-17825153,17825009-17825044,17824671-17824910,17824437-17824578,17823876-17824348	AT5G44250.2  CDS  gene_syn MLN1.18, MLN1_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF829, eukaryotic (InterPro:IPR008547); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G15695.1); Has 49 Blast hits to 49 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G44250.2p  transcript_id AT5G44250.2  protein_id AT5G44250.2p  transcript_id AT5G44250.2  
At5g44250	chr5:017825439	0.0	C/17825439-17825620,17825299-17825356,17825136-17825216,17825009-17825044,17824671-17824910,17824437-17824578,17823876-17824348	AT5G44250.1  CDS  gene_syn MLN1.18, MLN1_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF829, eukaryotic (InterPro:IPR008547); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G15695.1); Has 152 Blast hits to 152 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 91; Fungi - 2; Plants - 47; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT5G44250.1p  transcript_id AT5G44250.1  protein_id AT5G44250.1p  transcript_id AT5G44250.1  
At5g44255	chr5:017827733	0.0	W/17827733-17828292	AT5G44255.1  mRNA_TE_gene  pseudo  note Transposable element gene, gypsy-like retrotransposon family, has a 3.5e-09 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)  
At5g44260	chr5:017829974	0.0	C/17829974-17831119	AT5G44260.1  CDS  gene_syn K9L2.1, K9L2_1  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product zinc finger (CCCH-type) family protein  note zinc finger (CCCH-type) family protein; FUNCTIONS IN: transcription factor activity, nucleic acid binding; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: SOM (SOMNUS); nucleic acid binding / transcription factor (TAIR:AT1G03790.1); Has 916 Blast hits to 707 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 370; Fungi - 7; Plants - 206; Viruses - 2; Other Eukaryotes - 331 (source: NCBI BLink).  protein_id AT5G44260.1p  transcript_id AT5G44260.1  protein_id AT5G44260.1p  transcript_id AT5G44260.1  
At5g44265	chr5:017832943	0.0	C/17832943-17833316,17832779-17832785	AT5G44265.1  CDS  function Encodes a Protease inhibitor/seed storage/LTP family protein. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_function lipid binding|GO:0008289||IEA  product lipid binding  note lipid binding; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: ATA7; lipid transporter (TAIR:AT4G28395.1); Has 121 Blast hits to 121 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G44265.1p  transcript_id AT5G44265.1  protein_id AT5G44265.1p  transcript_id AT5G44265.1  
At5g44270	chr5:017833636	0.0	W/17833636-17833817,17834124-17834221,17834400-17834497,17834627-17834816,17835110-17835216,17835299-17835358,17835446-17835540,17835641-17835740	AT5G44270.1  CDS  gene_syn K9L2.2, K9L2_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, embryo, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Targeting for Xklp2 (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: targeting protein-related (TAIR:AT1G03780.2); Has 81 Blast hits to 77 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 2; Plants - 73; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G44270.1p  transcript_id AT5G44270.1  protein_id AT5G44270.1p  transcript_id AT5G44270.1  
At5g44280	chr5:017838799	0.0	C/17838799-17839114,17838650-17838695,17838179-17838237,17837889-17837970,17837590-17837710,17837467-17837508,17836829-17837380,17836623-17836730,17836249-17836458,17836115-17836147	AT5G44280.1  CDS  gene_syn ARABIDOPSIS THALIANA RING 1A, ATRING1A, K9L2.3, K9L2_3, RING 1A, RING1A  gene RING1A  function Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1b, a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression.  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634|19097900|IDA  go_component PRC1 complex|GO:0035102|19097900|IPI  go_process negative regulation of gene expression, epigenetic|GO:0045814|19097900|IGI  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product RING1A (RING 1A); protein binding / zinc ion binding  note RING 1A (RING1A); FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: negative regulation of gene expression, epigenetic; LOCATED IN: nucleus, PRC1 complex; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: RING1B (RING 1B); protein binding / zinc ion binding (TAIR:AT1G03770.1); Has 85923 Blast hits to 36089 proteins in 1395 species: Archae - 254; Bacteria - 5338; Metazoa - 35747; Fungi - 10568; Plants - 4163; Viruses - 1449; Other Eukaryotes - 28404 (source: NCBI BLink).  protein_id AT5G44280.1p  transcript_id AT5G44280.1  protein_id AT5G44280.1p  transcript_id AT5G44280.1  
At5g44280	chr5:017838799	0.0	C/17838799-17839114,17838650-17838695,17838179-17838237,17838071-17838101,17837928-17837970,17837803-17837819,17837590-17837710,17837467-17837508,17836829-17837380,17836623-17836730,17836249-17836458,17836115-17836147	AT5G44280.2  CDS  gene_syn ARABIDOPSIS THALIANA RING 1A, ATRING1A, K9L2.3, K9L2_3, RING 1A, RING1A  gene RING1A  function Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1b, a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression.  go_component nucleus|GO:0005634|19097900|IDA  go_component PRC1 complex|GO:0035102|19097900|IPI  go_process negative regulation of gene expression, epigenetic|GO:0045814|19097900|IGI  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product RING1A (RING 1A); protein binding / zinc ion binding  note RING 1A (RING1A); FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: negative regulation of gene expression, epigenetic; LOCATED IN: nucleus, PRC1 complex; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: RING1B (RING 1B); protein binding / zinc ion binding (TAIR:AT1G03770.1).  protein_id AT5G44280.2p  transcript_id AT5G44280.2  protein_id AT5G44280.2p  transcript_id AT5G44280.2  
At5g44283	chr5:017839585	0.0	C/17839585-17839656	AT5G44283.1  tRNA  gene_syn 67782.TRNA-LYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Lys (anticodon: TTT)  transcript_id AT5G44283.1  
At5g44286	chr5:017840220	0.0	W/17840220-17840304	AT5G44286.1  snoRNA  gene_syn 67782.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT5G44286.1  
At5g44290	chr5:017842765	0.0	C/17842765-17843190,17842387-17842671,17841981-17842298,17841676-17841903,17841383-17841598,17840970-17841293,17840750-17840887	AT5G44290.1  CDS  gene_syn K9L2.5, K9L2_5  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT1G03740.1); Has 89714 Blast hits to 88670 proteins in 3078 species: Archae - 33; Bacteria - 7447; Metazoa - 39632; Fungi - 8239; Plants - 17442; Viruses - 422; Other Eukaryotes - 16499 (source: NCBI BLink).  protein_id AT5G44290.1p  transcript_id AT5G44290.1  protein_id AT5G44290.1p  transcript_id AT5G44290.1  
At5g44290	chr5:017842765	0.0	C/17842765-17843190,17842387-17842671,17841981-17842298,17841676-17841903,17841383-17841598,17840970-17841293,17840750-17840887	AT5G44290.2  CDS  gene_syn K9L2.5, K9L2_5  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT1G03740.1); Has 89714 Blast hits to 88670 proteins in 3078 species: Archae - 33; Bacteria - 7447; Metazoa - 39632; Fungi - 8239; Plants - 17442; Viruses - 422; Other Eukaryotes - 16499 (source: NCBI BLink).  protein_id AT5G44290.2p  transcript_id AT5G44290.2  protein_id AT5G44290.2p  transcript_id AT5G44290.2  
At5g44290	chr5:017842765	0.0	C/17842765-17843190,17842387-17842671,17841981-17842298,17841676-17841903,17841383-17841598,17840970-17841293,17840750-17840887	AT5G44290.3  CDS  gene_syn K9L2.5, K9L2_5  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT1G03740.1); Has 89714 Blast hits to 88670 proteins in 3078 species: Archae - 33; Bacteria - 7447; Metazoa - 39632; Fungi - 8239; Plants - 17442; Viruses - 422; Other Eukaryotes - 16499 (source: NCBI BLink).  protein_id AT5G44290.3p  transcript_id AT5G44290.3  protein_id AT5G44290.3p  transcript_id AT5G44290.3  
At5g44290	chr5:017842765	0.0	C/17842765-17843190,17842387-17842671,17841981-17842298,17841676-17841903,17841383-17841598,17840970-17841293,17840750-17840887	AT5G44290.4  CDS  gene_syn K9L2.5, K9L2_5  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT1G03740.1); Has 89714 Blast hits to 88670 proteins in 3078 species: Archae - 33; Bacteria - 7447; Metazoa - 39632; Fungi - 8239; Plants - 17442; Viruses - 422; Other Eukaryotes - 16499 (source: NCBI BLink).  protein_id AT5G44290.4p  transcript_id AT5G44290.4  protein_id AT5G44290.4p  transcript_id AT5G44290.4  
At5g44300	chr5:017846062	0.0	C/17846062-17846179,17845607-17845796,17845371-17845407	AT5G44300.1  CDS  gene_syn K9L2.6, K9L2_6  go_function molecular_function|GO:0003674||ND  product dormancy/auxin associated family protein  note dormancy/auxin associated family protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Dormancyauxin associated (InterPro:IPR008406); BEST Arabidopsis thaliana protein match is: dormancy/auxin associated family protein (TAIR:AT2G33830.2); Has 113 Blast hits to 113 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G44300.1p  transcript_id AT5G44300.1  protein_id AT5G44300.1p  transcript_id AT5G44300.1  
At5g44306	chr5:017847199	0.0	C/17847199-17847372	AT5G44306.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G44306.1p  transcript_id AT5G44306.1  protein_id AT5G44306.1p  transcript_id AT5G44306.1  
At5g44310	chr5:017847998	0.0	C/17847998-17848885	AT5G44310.1  CDS  gene_syn K9L2.7, K9L2_7  go_process embryonic development ending in seed dormancy|GO:0009793||ISS  product late embryogenesis abundant domain-containing protein / LEA domain-containing protein  note late embryogenesis abundant domain-containing protein / LEA domain-containing protein; INVOLVED IN: embryonic development ending in seed dormancy; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: late embryogenesis abundant domain-containing protein / LEA domain-containing protein (TAIR:AT4G21020.1); Has 38028 Blast hits to 18502 proteins in 1497 species: Archae - 358; Bacteria - 8664; Metazoa - 11397; Fungi - 2870; Plants - 2401; Viruses - 262; Other Eukaryotes - 12076 (source: NCBI BLink).  protein_id AT5G44310.1p  transcript_id AT5G44310.1  protein_id AT5G44310.1p  transcript_id AT5G44310.1  
At5g44310	chr5:017849293	0.0	C/17849293-17849436,17847998-17848849	AT5G44310.2  CDS  gene_syn K9L2.7, K9L2_7  go_process embryonic development ending in seed dormancy|GO:0009793||ISS  product late embryogenesis abundant domain-containing protein / LEA domain-containing protein  note late embryogenesis abundant domain-containing protein / LEA domain-containing protein; INVOLVED IN: embryonic development ending in seed dormancy; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: late embryogenesis abundant domain-containing protein / LEA domain-containing protein (TAIR:AT4G21020.1); Has 37871 Blast hits to 18830 proteins in 1514 species: Archae - 358; Bacteria - 8655; Metazoa - 11327; Fungi - 2854; Plants - 2376; Viruses - 287; Other Eukaryotes - 12014 (source: NCBI BLink).  protein_id AT5G44310.2p  transcript_id AT5G44310.2  protein_id AT5G44310.2p  transcript_id AT5G44310.2  
At5g44313	chr5:017851014	0.0	W/17851014-17851727	AT5G44313.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G03950.1); similar to hypothetical protein DDBDRAFT_0217977 [Dictyostelium discoideum AX4] (GB:XP_642612.1); similar to similar to Plasmodium falciparum. Hypothetical protein [Dictyostelium discoideum] (GB:AAS38820.1)  
At5g44316	chr5:017852911	0.0	W/17852911-17853903,17853967-17854082,17854142-17854226,17854303-17854521	AT5G44316.1  CDS  go_process iron-sulfur cluster assembly|GO:0016226||IEA  go_function protein binding|GO:0005515||IEA  product ATP-binding-cassette transporter, putative  note ATP-binding-cassette transporter, putative; FUNCTIONS IN: protein binding; INVOLVED IN: iron-sulfur cluster assembly; CONTAINS InterPro DOMAIN/s: SUF system FeS cluster assembly, SufBD (InterPro:IPR000825); BEST Arabidopsis thaliana protein match is: ATABC1 (ATP BINDING CASSETTE PROTEIN 1); ATPase, coupled to transmembrane movement of substances / protein binding / transporter (TAIR:AT4G04770.1); Has 7353 Blast hits to 7207 proteins in 955 species: Archae - 194; Bacteria - 2660; Metazoa - 4; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 4445 (source: NCBI BLink).  protein_id AT5G44316.1p  transcript_id AT5G44316.1  protein_id AT5G44316.1p  transcript_id AT5G44316.1  
At5g44320	chr5:017854901	0.0	C/17854901-17856667	AT5G44320.1  CDS  gene_syn K9L2.10, K9L2_10  go_process translational initiation|GO:0006413||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_component cellular_component|GO:0005575||ND  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putative  note eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putative; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Eukaryotic translation initiation factor 3, subunit 7 (InterPro:IPR007783); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putative (TAIR:AT4G20980.3); Has 341 Blast hits to 337 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 173; Fungi - 61; Plants - 40; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT5G44320.1p  transcript_id AT5G44320.1  protein_id AT5G44320.1p  transcript_id AT5G44320.1  
At5g44330	chr5:017857325	0.0	W/17857325-17857516,17857604-17857816,17857896-17858044,17858120-17858188,17858270-17859056	AT5G44330.1  CDS  gene_syn K9L2.11, K9L2_11  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product male sterility MS5 family protein  note male sterility MS5 family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: MS5 (MALE-STERILE 5) (TAIR:AT4G20900.1); Has 121 Blast hits to 121 proteins in 23 species: Archae - 1; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT5G44330.1p  transcript_id AT5G44330.1  protein_id AT5G44330.1p  transcript_id AT5G44330.1  
At5g44340	chr5:017860601	0.0	C/17860601-17860994,17860201-17860470,17859442-17860112	AT5G44340.1  CDS  gene_syn K9L2.12, K9L2_12, TUB4, TUBULIN BETA CHAIN 4  gene TUB4  function beta tubulin gene  go_component cell wall|GO:0005618|16287169|IDA  go_process microtubule-based process|GO:0007017||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_process protein polymerization|GO:0051258||IEA  go_component tubulin complex|GO:0045298|1498609|ISS  go_function structural constituent of cytoskeleton|GO:0005200|1498609|ISS  product TUB4; structural constituent of cytoskeleton  note TUB4; FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: microtubule-based process, protein polymerization, microtubule-based movement; LOCATED IN: tubulin complex, cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase (InterPro:IPR003008), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: TUB9; GTP binding / GTPase/ structural molecule (TAIR:AT4G20890.1); Has 17214 Blast hits to 17160 proteins in 3656 species: Archae - 31; Bacteria - 42; Metazoa - 3618; Fungi - 9660; Plants - 1011; Viruses - 0; Other Eukaryotes - 2852 (source: NCBI BLink).  protein_id AT5G44340.1p  transcript_id AT5G44340.1  protein_id AT5G44340.1p  transcript_id AT5G44340.1  
At5g44345	chr5:017862113	0.0	W/17862113-17862220,17862359-17862383,17862465-17862725,17862928-17863079	AT5G44345.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G31470.1); Has 289 Blast hits to 266 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 289; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G44345.1p  transcript_id AT5G44345.1  protein_id AT5G44345.1p  transcript_id AT5G44345.1  
At5g44350	chr5:017864628	0.0	W/17864628-17865632	AT5G44350.1  CDS  gene_syn K9L2.14, K9L2_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ethylene-responsive nuclear protein -related  note ethylene-responsive nuclear protein -related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) (TAIR:AT4G20880.1); Has 34 Blast hits to 34 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G44350.1p  transcript_id AT5G44350.1  protein_id AT5G44350.1p  transcript_id AT5G44350.1  
At5g44360	chr5:017872100	0.0	C/17872100-17873698	AT5G44360.1  CDS  gene_syn K9L2.15, K9L2_15  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function electron carrier activity|GO:0009055||ISS  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Oxygen oxidoreductase covalent FAD-binding site (InterPro:IPR006093), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT4G20860.1); Has 2962 Blast hits to 2887 proteins in 483 species: Archae - 25; Bacteria - 1154; Metazoa - 4; Fungi - 1132; Plants - 407; Viruses - 0; Other Eukaryotes - 240 (source: NCBI BLink).  protein_id AT5G44360.1p  transcript_id AT5G44360.1  protein_id AT5G44360.1p  transcript_id AT5G44360.1  
At5g44370	chr5:017875147	0.0	C/17875147-17876445	AT5G44370.1  CDS  gene_syn K9L2.16, K9L2_16, PHOSPHATE TRANSPORTER 4;6, PHT4;6  gene PHT4;6  function Encodes an inorganic phosphate transporter (PHT4;6).  go_component Golgi apparatus|GO:0005794|18086223|IDA  go_component membrane|GO:0016020||ISS  go_process response to nematode|GO:0009624|16478044|IEP  go_function inorganic phosphate transmembrane transporter activity|GO:0005315|18086223|IDA  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function organic anion transmembrane transporter activity|GO:0008514||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product PHT4;6 (PHOSPHATE TRANSPORTER 4;6); carbohydrate transmembrane transporter/ inorganic phosphate transmembrane transporter/ organic anion transmembrane transporter/ sugar:hydrogen symporter  note PHOSPHATE TRANSPORTER 4;6 (PHT4;6); FUNCTIONS IN: organic anion transmembrane transporter activity, carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, inorganic phosphate transmembrane transporter activity; INVOLVED IN: response to nematode; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ANTR2; inorganic phosphate transmembrane transporter/ organic anion transmembrane transporter (TAIR:AT4G00370.1); Has 17595 Blast hits to 17506 proteins in 1184 species: Archae - 221; Bacteria - 13210; Metazoa - 2113; Fungi - 599; Plants - 175; Viruses - 0; Other Eukaryotes - 1277 (source: NCBI BLink).  protein_id AT5G44370.1p  transcript_id AT5G44370.1  protein_id AT5G44370.1p  transcript_id AT5G44370.1  
At5g44375	chr5:017877680	0.0	C/17877680-17877752	AT5G44375.1  tRNA  gene_syn 67782.TRNA-VAL-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Val (anticodon: TAC)  transcript_id AT5G44375.1  
At5g44380	chr5:017880864	0.0	C/17880864-17881369,17878873-17879992	AT5G44380.1  CDS  gene_syn K9L2.18, K9L2_18  go_component cell wall|GO:0005618|14595688|IDA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_process response to oxidative stress|GO:0006979|15634198|IEP  go_function electron carrier activity|GO:0009055||ISS  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; INVOLVED IN: response to oxidative stress; LOCATED IN: cell wall; EXPRESSED IN: shoot apex, sepal, hypocotyl, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: FAD-linked oxidase, FAD-binding, subdomain 2 (InterPro:IPR016168), FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT5G44390.1); Has 3898 Blast hits to 3774 proteins in 583 species: Archae - 42; Bacteria - 1843; Metazoa - 32; Fungi - 1123; Plants - 354; Viruses - 0; Other Eukaryotes - 504 (source: NCBI BLink).  protein_id AT5G44380.1p  transcript_id AT5G44380.1  protein_id AT5G44380.1p  transcript_id AT5G44380.1  
At5g44390	chr5:017884404	0.0	C/17884404-17884906,17882329-17883454	AT5G44390.1  CDS  gene_syn K9L2.19, K9L2_19  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function electron carrier activity|GO:0009055||ISS  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, cotyledon, hypocotyl, root, stamen; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: FAD-linked oxidase, FAD-binding, subdomain 2 (InterPro:IPR016168), FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT5G44380.1); Has 5712 Blast hits to 5663 proteins in 771 species: Archae - 58; Bacteria - 2943; Metazoa - 83; Fungi - 1185; Plants - 413; Viruses - 0; Other Eukaryotes - 1030 (source: NCBI BLink).  protein_id AT5G44390.1p  transcript_id AT5G44390.1  protein_id AT5G44390.1p  transcript_id AT5G44390.1  
At5g44400	chr5:017887575	0.0	C/17887575-17888071,17886365-17887481	AT5G44400.1  CDS  gene_syn K9L2.20, K9L2_20  go_component cell wall|GO:0005618|15593128|IDA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function electron carrier activity|GO:0009055||ISS  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: FAD-linked oxidase, FAD-binding, subdomain 2 (InterPro:IPR016168), FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT5G44390.1); Has 4147 Blast hits to 4107 proteins in 604 species: Archae - 48; Bacteria - 2059; Metazoa - 43; Fungi - 1096; Plants - 336; Viruses - 0; Other Eukaryotes - 565 (source: NCBI BLink).  protein_id AT5G44400.1p  transcript_id AT5G44400.1  protein_id AT5G44400.1p  transcript_id AT5G44400.1  
At5g44410	chr5:017891246	0.0	C/17891246-17892853	AT5G44410.1  CDS  gene_syn MFC16.3, MFC16_3  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function electron carrier activity|GO:0009055||ISS  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Oxygen oxidoreductase covalent FAD-binding site (InterPro:IPR006093), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT5G44440.1); Has 3022 Blast hits to 2953 proteins in 470 species: Archae - 17; Bacteria - 1213; Metazoa - 6; Fungi - 1147; Plants - 347; Viruses - 0; Other Eukaryotes - 292 (source: NCBI BLink).  protein_id AT5G44410.1p  transcript_id AT5G44410.1  protein_id AT5G44410.1p  transcript_id AT5G44410.1  
At5g44415	chr5:017893946	0.0	W/17893946-17896375	AT5G44415.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09370.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23930.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G47330.1); similar to hypothetical protein 23.t00036 [Brassica oleracea] (GB:ABD65624.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048)  
At5g44416	chr5:017896964	0.0	C/17896964-17900821	AT5G44416.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 4.6e-75 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At5g44417	chr5:017901832	0.0	C/17901832-17903346	AT5G44417.1  pseudogenic_transcript  pseudo  note pseudogene, similar to CPRD2, blastp match of 42% identity and 7.0e-94 P-value to GP|13161397|dbj|BAB33033.1||AB056448 CPRD2 {Vigna unguiculata}  
At5g44418	chr5:017905910	0.0	C/17905910-17906434	AT5G44418.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At5g44420	chr5:017907487	0.0	C/17907487-17907550,17907216-17907394	AT5G44420.1  CDS  gene_syn LCR77, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 77, MFC16.8, MFC16_8, PDF1.2, PDF1.2A, PLANT DEFENSIN 1.2, PLANT DEFENSIN 1.2A  gene PDF1.2  function Encodes an ethylene- and jasmonate-responsive plant defensin. mRNA levels are not responsive to salicylic acid treatment; although jasmonate and salicylic acid can act synergistically to enhance the expression of this gene. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.  go_component endomembrane system|GO:0012505||IEA  go_component cell wall|GO:0005618||ISS  go_process defense response|GO:0006952|9869413|TAS  go_process defense response|GO:0006952||ISS  go_process response to insect|GO:0009625|11161062|IEP  go_process response to ethylene stimulus|GO:0009723|8989885|IEP  go_process response to salicylic acid stimulus|GO:0009751|9001391|IEP  go_process response to salicylic acid stimulus|GO:0009751|9869413|IEP  go_process response to jasmonic acid stimulus|GO:0009753|12805630|IEP  go_process response to jasmonic acid stimulus|GO:0009753|9001391|IEP  go_process jasmonic acid and ethylene-dependent systemic resistance|GO:0009861|8989885|TAS  go_function molecular_function|GO:0003674||ND  product PDF1.2  note PDF1.2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 6 processes; LOCATED IN: endomembrane system, cell wall; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: PDF1.2b (plant defensin 1.2b) (TAIR:AT2G26020.1); Has 124 Blast hits to 124 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 123; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G44420.1p  transcript_id AT5G44420.1  protein_id AT5G44420.1p  transcript_id AT5G44420.1  
At5g44430	chr5:017909381	0.0	C/17909381-17909444,17909092-17909270	AT5G44430.1  CDS  gene_syn MFC16.9, MFC16_9, PDF1.2c, plant defensin 1.2c  gene PDF1.2c  function Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.  go_component endomembrane system|GO:0012505||IEA  go_component cell wall|GO:0005618||ISS  go_process defense response|GO:0006952|18674922|ISS  go_process defense response|GO:0006952||ISS  go_function molecular_function|GO:0003674||ND  product PDF1.2c (plant defensin 1.2c)  note plant defensin 1.2c (PDF1.2c); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: endomembrane system, cell wall; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: PDF1.2b (plant defensin 1.2b) (TAIR:AT2G26020.1); Has 131 Blast hits to 131 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 130; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G44430.1p  transcript_id AT5G44430.1  protein_id AT5G44430.1p  transcript_id AT5G44430.1  
At5g44440	chr5:017910694	0.0	C/17910694-17912295	AT5G44440.1  CDS  gene_syn MFC16.10, MFC16_10  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function electron carrier activity|GO:0009055||ISS  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, petal, sepal, flower, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT5G44410.1); Has 3215 Blast hits to 3107 proteins in 522 species: Archae - 13; Bacteria - 1477; Metazoa - 1; Fungi - 1131; Plants - 356; Viruses - 0; Other Eukaryotes - 237 (source: NCBI BLink).  protein_id AT5G44440.1p  transcript_id AT5G44440.1  protein_id AT5G44440.1p  transcript_id AT5G44440.1  
At5g44450	chr5:017915712	0.0	C/17915712-17916017,17915457-17915604,17915320-17915378,17915119-17915229,17914923-17915024,17914783-17914837,17914583-17914680,17914360-17914485	AT5G44450.1  CDS  gene_syn MFC16.11, MFC16_11  go_component chloroplast|GO:0009507||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_process biological_process|GO:0008150||ND  product methyltransferase  note methyltransferase; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF858, methyltransferase-like (InterPro:IPR008576); Has 368 Blast hits to 364 proteins in 146 species: Archae - 0; Bacteria - 8; Metazoa - 150; Fungi - 93; Plants - 50; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT5G44450.1p  transcript_id AT5G44450.1  protein_id AT5G44450.1p  transcript_id AT5G44450.1  
At5g44460	chr5:017917286	0.0	W/17917286-17917831	AT5G44460.1  CDS  gene_syn MFC16.12, MFC16_12  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function calcium ion binding|GO:0005509||IEA  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding protein, putative  note calcium-binding protein, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to cadmium ion; EXPRESSED IN: root, cultured cell; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding protein, putative (TAIR:AT4G20780.1); Has 12279 Blast hits to 9033 proteins in 1085 species: Archae - 0; Bacteria - 43; Metazoa - 5206; Fungi - 2595; Plants - 2668; Viruses - 0; Other Eukaryotes - 1767 (source: NCBI BLink).  protein_id AT5G44460.1p  transcript_id AT5G44460.1  protein_id AT5G44460.1p  transcript_id AT5G44460.1  
At5g44470	chr5:017918739	0.0	W/17918739-17918820,17918920-17919164	AT5G44470.1  CDS  gene_syn MFC16.13, MFC16_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT3G23320.1); Has 48 Blast hits to 48 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G44470.1p  transcript_id AT5G44470.1  protein_id AT5G44470.1p  transcript_id AT5G44470.1  
At5g44480	chr5:017921515	0.0	W/17921515-17921772,17921865-17921978,17922059-17922166,17922260-17922351,17922445-17922586,17922661-17922755,17922856-17922985,17923064-17923208,17923417-17923643	AT5G44480.1  CDS  gene_syn DEFECTIVE UGE IN ROOT, DUR, MFC16.15, MFC16_15  gene DUR  function mutant has Altered lateral root; UDP Glucose Epimerase  go_process galactose metabolic process|GO:0006012||IEA  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_function catalytic activity|GO:0003824||IEA  go_function UDP-glucose 4-epimerase activity|GO:0003978||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  go_process nucleotide-sugar metabolic process|GO:0009225||ISS  go_function catalytic activity|GO:0003824||ISS  product DUR (DEFECTIVE UGE IN ROOT); UDP-glucose 4-epimerase/ binding / catalytic/ coenzyme binding  note DEFECTIVE UGE IN ROOT (DUR); FUNCTIONS IN: coenzyme binding, UDP-glucose 4-epimerase activity, binding, catalytic activity; INVOLVED IN: galactose metabolic process, cellular metabolic process, nucleotide-sugar metabolic process, metabolic process; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886); BEST Arabidopsis thaliana protein match is: NAD-dependent epimerase/dehydratase family protein (TAIR:AT4G20460.2); Has 31153 Blast hits to 31148 proteins in 1712 species: Archae - 470; Bacteria - 14893; Metazoa - 605; Fungi - 463; Plants - 716; Viruses - 28; Other Eukaryotes - 13978 (source: NCBI BLink).  protein_id AT5G44480.1p  transcript_id AT5G44480.1  protein_id AT5G44480.1p  transcript_id AT5G44480.1  
At5g44490	chr5:017924035	0.0	W/17924035-17924646,17924725-17924976,17925063-17925230,17925316-17925571,17925764-17925843	AT5G44490.1  CDS  gene_syn MFC16.16, MFC16_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G22730.1); Has 1112 Blast hits to 1091 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1112; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G44490.1p  transcript_id AT5G44490.1  protein_id AT5G44490.1p  transcript_id AT5G44490.1  
At5g44495	chr5:017926351	0.0	C/17926351-17926710	AT5G44495.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42895.1); Has 67 Blast hits to 64 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G44495.1p  transcript_id AT5G44495.1  protein_id AT5G44495.1p  transcript_id AT5G44495.1  
At5g44500	chr5:017927505	0.0	W/17927505-17928269	AT5G44500.1  CDS  gene_syn MFC16.18, MFC16_18  go_component nucleolus|GO:0005730|15496452|IDA  go_component nucleus|GO:0005634||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_function molecular_function|GO:0003674||ND  product small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative  note small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus, small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Small ribonucleoprotein associated, SmB/SmN (InterPro:IPR017131), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: smB (small nuclear ribonucleoprotein associated protein B) (TAIR:AT4G20440.4); Has 53621 Blast hits to 25379 proteins in 1012 species: Archae - 54; Bacteria - 5505; Metazoa - 29637; Fungi - 5515; Plants - 6455; Viruses - 1288; Other Eukaryotes - 5167 (source: NCBI BLink).  protein_id AT5G44500.1p  transcript_id AT5G44500.1  protein_id AT5G44500.1p  transcript_id AT5G44500.1  
At5g44500	chr5:017927505	0.0	W/17927505-17928269	AT5G44500.2  CDS  gene_syn MFC16.18, MFC16_18  go_component nucleolus|GO:0005730|15496452|IDA  go_component nucleus|GO:0005634||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_function molecular_function|GO:0003674||ND  product small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative  note small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus, small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Small ribonucleoprotein associated, SmB/SmN (InterPro:IPR017131), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: smB (small nuclear ribonucleoprotein associated protein B) (TAIR:AT4G20440.4); Has 53621 Blast hits to 25379 proteins in 1012 species: Archae - 54; Bacteria - 5505; Metazoa - 29637; Fungi - 5515; Plants - 6455; Viruses - 1288; Other Eukaryotes - 5167 (source: NCBI BLink).  protein_id AT5G44500.2p  transcript_id AT5G44500.2  protein_id AT5G44500.2p  transcript_id AT5G44500.2  
At5g44510	chr5:017933638	0.0	C/17933638-17934188,17932438-17933539,17932054-17932362,17930509-17931936,17930282-17930329,17929942-17929964,17929673-17929775	AT5G44510.1  CDS  gene_syn MFC16.19, MFC16_19, TAO1, TARGET OF AVRB OPERATION1  gene TAO1  function Encodes TAO1 (Target of AvrB Operation), a TIR-NB-LRR protein that contributes to disease resistance induced by the Pseudomonas syringae effector AvrB.  go_component chloroplast|GO:0009507||IEA  go_component intrinsic to membrane|GO:0031224||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  go_process defense response to bacterium|GO:0042742|18424557|IMP  product TAO1 (TARGET OF AVRB OPERATION1); ATP binding / protein binding / transmembrane receptor  note TARGET OF AVRB OPERATION1 (TAO1); FUNCTIONS IN: protein binding, transmembrane receptor activity, ATP binding; INVOLVED IN: defense response to bacterium, defense response; LOCATED IN: intrinsic to membrane, chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G11250.1); Has 43464 Blast hits to 19817 proteins in 696 species: Archae - 44; Bacteria - 2177; Metazoa - 5545; Fungi - 318; Plants - 31796; Viruses - 21; Other Eukaryotes - 3563 (source: NCBI BLink).  protein_id AT5G44510.1p  transcript_id AT5G44510.1  protein_id AT5G44510.1p  transcript_id AT5G44510.1  
At5g44520	chr5:017936301	0.0	C/17936301-17936441,17936036-17936163,17935669-17935738,17935478-17935585,17935296-17935391,17935155-17935211,17934938-17935055,17934799-17934865,17934610-17934715	AT5G44520.1  CDS  gene_syn MFC16.20, MFC16_20  go_component chloroplast|GO:0009507|18431481|IDA  go_process 5-phosphoribose 1-diphosphate biosynthetic process|GO:0006015||IEA  go_process pentose-phosphate shunt, non-oxidative branch|GO:0009052||IEA  go_process reductive pentose-phosphate cycle|GO:0019253||IEA  go_process D-ribose catabolic process|GO:0019303||IEA  go_process glucose catabolic process to lactate and acetate|GO:0019658||IEA  go_function ribose-5-phosphate isomerase activity|GO:0004751||IEA  product ribose 5-phosphate isomerase-related  note ribose 5-phosphate isomerase-related; FUNCTIONS IN: ribose-5-phosphate isomerase activity; INVOLVED IN: glucose catabolic process to lactate and acetate, 5-phosphoribose 1-diphosphate biosynthetic process, reductive pentose-phosphate cycle, D-ribose catabolic process, pentose-phosphate shunt, non-oxidative branch; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribose 5-phosphate isomerase (InterPro:IPR004788); BEST Arabidopsis thaliana protein match is: ribose 5-phosphate isomerase-related (TAIR:AT3G04790.1); Has 1548 Blast hits to 1548 proteins in 581 species: Archae - 127; Bacteria - 903; Metazoa - 69; Fungi - 33; Plants - 86; Viruses - 0; Other Eukaryotes - 330 (source: NCBI BLink).  protein_id AT5G44520.1p  transcript_id AT5G44520.1  protein_id AT5G44520.1p  transcript_id AT5G44520.1  
At5g44530	chr5:017937931	0.0	W/17937931-17938142,17938233-17938392,17938481-17938878,17938956-17939051,17939137-17939209,17939302-17939584,17939673-17940004,17940079-17940349,17940421-17940702,17940778-17941193	AT5G44530.1  CDS  gene_syn MFC16.21, MFC16_21  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product subtilase family protein  note subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT4G20430.1); Has 5793 Blast hits to 4927 proteins in 857 species: Archae - 152; Bacteria - 3380; Metazoa - 98; Fungi - 410; Plants - 855; Viruses - 0; Other Eukaryotes - 898 (source: NCBI BLink).  protein_id AT5G44530.1p  transcript_id AT5G44530.1  protein_id AT5G44530.1p  transcript_id AT5G44530.1  
At5g44540	chr5:017941287	0.0	C/17941287-17941646	AT5G44540.1  CDS  gene_syn MFC16.22, MFC16_22  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product tapetum-specific protein-related  note tapetum-specific protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Tapetum specific TAP35TAP44 (InterPro:IPR009891); BEST Arabidopsis thaliana protein match is: tapetum-specific protein-related (TAIR:AT4G20420.1); Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G44540.1p  transcript_id AT5G44540.1  protein_id AT5G44540.1p  transcript_id AT5G44540.1  
At5g44550	chr5:017942963	0.0	C/17942963-17943174,17942751-17942874,17942100-17942357	AT5G44550.1  CDS  gene_syn MFC16.23, MFC16_23  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane family protein  note integral membrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT4G20390.1); Has 252 Blast hits to 252 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 252; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G44550.1p  transcript_id AT5G44550.1  protein_id AT5G44550.1p  transcript_id AT5G44550.1  
At5g44555	chr5:017944809	0.0	W/17944809-17945167	AT5G44555.1  pseudogenic_transcript  pseudo  function Encodes a ECA1 gametogenesis related family protein [pseudogene]  
At5g44560	chr5:017946081	0.0	W/17946081-17946114,17946490-17946534,17946965-17946999,17947067-17947117,17947215-17947319,17947414-17947485,17947600-17947671,17947776-17947892,17947995-17948071,17948162-17948222	AT5G44560.1  CDS  gene_syn MFC16.25, MFC16_25, VPS2, VPS2.2  gene VPS2.2  go_component ESCRT III complex|GO:0000815|17090720|ISS  go_process vesicle-mediated transport|GO:0016192|16488176|ISS  product VPS2.2  note VPS2.2; INVOLVED IN: vesicle-mediated transport; LOCATED IN: ESCRT III complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: VPS2.3 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2.3) (TAIR:AT1G03950.1); Has 1267 Blast hits to 1266 proteins in 169 species: Archae - 0; Bacteria - 10; Metazoa - 655; Fungi - 211; Plants - 242; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT5G44560.1p  transcript_id AT5G44560.1  protein_id AT5G44560.1p  transcript_id AT5G44560.1  
At5g44560	chr5:017946516	0.0	W/17946516-17946534,17946965-17946999,17947067-17947117,17947215-17947319,17947414-17947485,17947600-17947671,17947776-17947892,17947995-17948071,17948162-17948222	AT5G44560.2  CDS  gene_syn MFC16.25, MFC16_25, VPS2, VPS2.2  gene VPS2.2  go_component ESCRT III complex|GO:0000815|17090720|ISS  go_process vesicle-mediated transport|GO:0016192|16488176|ISS  product VPS2.2  note VPS2.2; INVOLVED IN: vesicle-mediated transport; LOCATED IN: ESCRT III complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: VPS2.3 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2.3) (TAIR:AT1G03950.1); Has 1161 Blast hits to 1160 proteins in 165 species: Archae - 0; Bacteria - 2; Metazoa - 579; Fungi - 195; Plants - 242; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).  protein_id AT5G44560.2p  transcript_id AT5G44560.2  protein_id AT5G44560.2p  transcript_id AT5G44560.2  
At5g44562	chr5:017947617	0.0	C/17947617-17948398	AT5G44562.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT5G44560  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G44562.1  
At5g44565	chr5:017951595	0.0	W/17951595-17951715,17952616-17952704,17952851-17952862	AT5G44565.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 13 Blast hits to 13 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G44565.1p  transcript_id AT5G44565.1  protein_id AT5G44565.1p  transcript_id AT5G44565.1  
At5g44568	chr5:017962041	0.0	C/17962041-17962146,17961379-17961500	AT5G44568.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 11 Blast hits to 11 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G44568.1p  transcript_id AT5G44568.1  protein_id AT5G44568.1p  transcript_id AT5G44568.1  
At5g44570	chr5:017964439	0.0	W/17964439-17964544,17964977-17965195,17965538-17965603,17966465-17966496	AT5G44570.2  CDS  gene_syn K15C23.1, K15C23_1  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, hypocotyl, flower, leaf; EXPRESSED DURING: petal differentiation and expansion stage, LP.08 eight leaves visible.  protein_id AT5G44570.2p  transcript_id AT5G44570.2  protein_id AT5G44570.2p  transcript_id AT5G44570.2  
At5g44570	chr5:017964439	0.0	W/17964439-17964544,17964977-17965195,17965538-17965614	AT5G44570.1  CDS  gene_syn K15C23.1, K15C23_1  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, hypocotyl, flower, leaf; EXPRESSED DURING: petal differentiation and expansion stage, LP.08 eight leaves visible; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G44570.1p  transcript_id AT5G44570.1  protein_id AT5G44570.1p  transcript_id AT5G44570.1  
At5g44572	chr5:017968195	0.0	W/17968195-17968300,17969011-17969106,17969272-17969351	AT5G44572.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G44572.1p  transcript_id AT5G44572.1  protein_id AT5G44572.1p  transcript_id AT5G44572.1  
At5g44574	chr5:017970709	0.0	W/17970709-17970811,17970955-17971074,17971157-17971254	AT5G44574.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44572.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G44574.1p  transcript_id AT5G44574.1  protein_id AT5G44574.1p  transcript_id AT5G44574.1  
At5g44575	chr5:017973875	0.0	W/17973875-17973992,17974682-17974782	AT5G44575.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G44575.1p  transcript_id AT5G44575.1  protein_id AT5G44575.1p  transcript_id AT5G44575.1  
At5g44578	chr5:017977223	0.0	W/17977223-17977340,17978024-17978113,17978376-17978479	AT5G44578.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 11 Blast hits to 11 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G44578.1p  transcript_id AT5G44578.1  protein_id AT5G44578.1p  transcript_id AT5G44578.1  
At5g44580	chr5:017979327	0.0	W/17979327-17979444,17979629-17979712,17980087-17980181	AT5G44580.1  CDS  gene_syn K15C23.2, K15C23_2  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44582.1); Has 10 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G44580.1p  transcript_id AT5G44580.1  protein_id AT5G44580.1p  transcript_id AT5G44580.1  
At5g44582	chr5:017980867	0.0	W/17980867-17980987,17981099-17981182,17981647-17981720	AT5G44582.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44580.1); Has 16 Blast hits to 16 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G44582.1p  transcript_id AT5G44582.1  protein_id AT5G44582.1p  transcript_id AT5G44582.1  
At5g44585	chr5:017984621	0.0	W/17984621-17984741,17985190-17985305	AT5G44585.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G44585.1p  transcript_id AT5G44585.1  protein_id AT5G44585.1p  transcript_id AT5G44585.1  
At5g44590	chr5:017987591	0.0	W/17987591-17987858,17987938-17987993,17988062-17988175,17988283-17988360,17988450-17988579,17988659-17988711,17988790-17988963,17989051-17989227	AT5G44590.1  CDS  gene_syn K15C23.3, K15C23_3  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44600.1); Has 81 Blast hits to 81 proteins in 26 species: Archae - 2; Bacteria - 17; Metazoa - 5; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT5G44590.1p  transcript_id AT5G44590.1  protein_id AT5G44590.1p  transcript_id AT5G44590.1  
At5g44600	chr5:017989867	0.0	W/17989867-17990176,17990268-17990323,17990478-17990537,17990613-17990690,17990782-17990911,17990986-17991038,17991124-17991297,17991379-17991519	AT5G44600.1  CDS  gene_syn K15C23.4, K15C23_4  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44590.1); Has 105 Blast hits to 105 proteins in 36 species: Archae - 2; Bacteria - 44; Metazoa - 1; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT5G44600.1p  transcript_id AT5G44600.1  protein_id AT5G44600.1p  transcript_id AT5G44600.1  
At5g44610	chr5:017993718	0.0	C/17993718-17994224	AT5G44610.1  CDS  gene_syn K15C23.5, K15C23_5, MAP18, Microtubule-associated Protein 18  gene MAP18  function Encodes a protein of unknown function with seven repeated VEEKK motifs. RNAi and overexpression experiments suggest that the gene is not involved in cell division but might be consequential for cell shape of epidermal and cortical cells. The protein encoded by this gene binds to cortical microtubules and inhibits tubulin polymerization.  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cortical microtubule|GO:0055028|17337629|IDA  go_process cell morphogenesis|GO:0000902|17337629|IMP  go_process negative regulation of microtubule polymerization|GO:0031115|17337629|IDA  go_process cortical microtubule organization|GO:0043622|17337629|IMP  go_process cell division|GO:0051301|17337629|IMP  go_function microtubule binding|GO:0008017|17337629|IDA  product MAP18 (Microtubule-associated Protein 18); microtubule binding  note Microtubule-associated Protein 18 (MAP18); FUNCTIONS IN: microtubule binding; INVOLVED IN: cortical microtubule organization, negative regulation of microtubule polymerization, cell morphogenesis, cell division; LOCATED IN: cortical microtubule, plasma membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: DREPP plasma membrane polypeptide (InterPro:IPR008469); Has 30280 Blast hits to 12279 proteins in 1069 species: Archae - 131; Bacteria - 4941; Metazoa - 10146; Fungi - 2708; Plants - 875; Viruses - 240; Other Eukaryotes - 11239 (source: NCBI BLink).  protein_id AT5G44610.1p  transcript_id AT5G44610.1  protein_id AT5G44610.1p  transcript_id AT5G44610.1  
At5g44620	chr5:017998601	0.0	C/17998601-17999539,17997908-17998528	AT5G44620.1  CDS  gene_syn CYP706A3, CYTOCHROME P450, FAMILY 706, SUBFAMILY A, POLYPEPTIDE 3, K15C23.6, K15C23_6  gene CYP706A3  function member of CYP706A  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component cellular_component|GO:0005575||ND  go_function oxygen binding|GO:0019825||ISS  product CYP706A3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP706A3; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP706A7; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G12330.1); Has 23502 Blast hits to 23340 proteins in 1226 species: Archae - 23; Bacteria - 2011; Metazoa - 10388; Fungi - 4419; Plants - 5668; Viruses - 3; Other Eukaryotes - 990 (source: NCBI BLink).  protein_id AT5G44620.1p  transcript_id AT5G44620.1  protein_id AT5G44620.1p  transcript_id AT5G44620.1  
At5g44630	chr5:018003280	0.0	W/18003280-18003384,18003499-18003781,18003884-18004265,18004350-18004571,18004668-18004806,18004881-18005129,18005323-18005616	AT5G44630.1  CDS  gene_syn K15C23.7, K15C23_7  function Encodes a sesquiterpene synthase involved in generating all of the group B sesquiterpenes found in the Arabidopsis floral volatile blend. Strongly expressed in intrafloral nectaries.  go_function magnesium ion binding|GO:0000287||IEA  go_function lyase activity|GO:0016829||IEA  go_component cellular_component|GO:0005575||ND  go_process sesquiterpenoid biosynthetic process|GO:0016106|15918888|IDA  go_process sesquiterpene biosynthetic process|GO:0051762|15918888|IDA  product terpene synthase/cyclase family protein  note terpene synthase/cyclase family protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: sesquiterpene biosynthetic process, sesquiterpenoid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: TPS13 (TERPENOID SYNTHASE 13); cyclase (TAIR:AT4G13300.1); Has 1073 Blast hits to 1066 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1070; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G44630.1p  transcript_id AT5G44630.1  protein_id AT5G44630.1p  transcript_id AT5G44630.1  
At5g44635	chr5:018010466	0.0	C/18010466-18010542,18010232-18010384,18010005-18010130,18009735-18009897,18009433-18009626,18009134-18009329,18008976-18009053,18008654-18008883,18008452-18008566,18008257-18008331,18008029-18008169,18007710-18007913,18007453-18007614,18007298-18007353,18007063-18007205,18006866-18006976,18006657-18006787,18006431-18006571	AT5G44635.1  CDS  go_component nucleus|GO:0005634||IEA  go_process DNA replication|GO:0006260||IEA  go_process DNA replication initiation|GO:0006270||IEA  go_function DNA binding|GO:0003677||IEA  go_function ATP binding|GO:0005524||IEA  go_process DNA replication initiation|GO:0006270||ISS  go_function DNA binding|GO:0003677||ISS  go_function ATP binding|GO:0005524||ISS  go_function DNA-dependent ATPase activity|GO:0008094||ISS  product minichromosome maintenance family protein / MCM family protein  note minichromosome maintenance family protein / MCM family protein; FUNCTIONS IN: DNA-dependent ATPase activity, DNA binding, ATP binding; INVOLVED IN: DNA replication, DNA replication initiation; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 6 (InterPro:IPR008049); BEST Arabidopsis thaliana protein match is: DNA replication licensing factor, putative (TAIR:AT2G16440.1); Has 3614 Blast hits to 3490 proteins in 619 species: Archae - 264; Bacteria - 682; Metazoa - 1004; Fungi - 552; Plants - 258; Viruses - 2; Other Eukaryotes - 852 (source: NCBI BLink).  protein_id AT5G44635.1p  transcript_id AT5G44635.1  protein_id AT5G44635.1p  transcript_id AT5G44635.1  
At5g44640	chr5:018011146	0.0	W/18011146-18012669	AT5G44640.1  CDS  gene_syn BETA GLUCOSIDASE 13, BGLU13, K15C23.9, K15C23_9  gene BGLU13  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU13 (BETA GLUCOSIDASE 13); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 13 (BGLU13); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU12 (BETA GLUCOSIDASE 12); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT5G42260.1); Has 5787 Blast hits to 5543 proteins in 798 species: Archae - 98; Bacteria - 3140; Metazoa - 608; Fungi - 134; Plants - 851; Viruses - 0; Other Eukaryotes - 956 (source: NCBI BLink).  protein_id AT5G44640.1p  transcript_id AT5G44640.1  protein_id AT5G44640.1p  transcript_id AT5G44640.1  
At5g44650	chr5:018013396	0.0	W/18013396-18013740,18013817-18013861,18013947-18014060,18014531-18014611,18014891-18015058,18015203-18015292	AT5G44650.1  CDS  gene_syn K15C23.10, K15C23_10  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 28 Blast hits to 28 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G44650.1p  transcript_id AT5G44650.1  protein_id AT5G44650.1p  transcript_id AT5G44650.1  
At5g44660	chr5:018015810	0.0	W/18015810-18017081	AT5G44660.1  CDS  gene_syn K15C23.11, K15C23_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G20190.1); Has 881 Blast hits to 385 proteins in 98 species: Archae - 0; Bacteria - 247; Metazoa - 260; Fungi - 83; Plants - 38; Viruses - 6; Other Eukaryotes - 247 (source: NCBI BLink).  protein_id AT5G44660.1p  transcript_id AT5G44660.1  protein_id AT5G44660.1p  transcript_id AT5G44660.1  
At5g44670	chr5:018020053	0.0	C/18020053-18021266,18019209-18019554	AT5G44670.1  CDS  gene_syn K15C23.12, K15C23_12  go_component cytoplasm|GO:0005737|15469496|IDA  go_component vacuole|GO:0005773|15469496|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G20170.1); Has 134 Blast hits to 134 proteins in 22 species: Archae - 0; Bacteria - 14; Metazoa - 32; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G44670.1p  transcript_id AT5G44670.1  protein_id AT5G44670.1p  transcript_id AT5G44670.1  
At5g44680	chr5:018025374	0.0	C/18025374-18025893,18025218-18025275,18025046-18025129,18024825-18024960,18024461-18024724	AT5G44680.1  CDS  gene_syn K23L20.1, K23L20_1  go_process DNA repair|GO:0006281||IEA  go_process base-excision repair|GO:0006284||IEA  go_function catalytic activity|GO:0003824||IEA  go_function DNA-3-methyladenine glycosylase I activity|GO:0008725||IEA  go_process DNA repair|GO:0006281||ISS  go_function DNA-3-methyladenine glycosylase I activity|GO:0008725||ISS  product methyladenine glycosylase family protein  note methyladenine glycosylase family protein; FUNCTIONS IN: DNA-3-methyladenine glycosylase I activity, catalytic activity; INVOLVED IN: DNA repair, base-excision repair; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Methyladenine glycosylase (InterPro:IPR005019); BEST Arabidopsis thaliana protein match is: methyladenine glycosylase family protein (TAIR:AT3G12710.1); Has 1976 Blast hits to 1976 proteins in 805 species: Archae - 7; Bacteria - 1552; Metazoa - 4; Fungi - 2; Plants - 85; Viruses - 0; Other Eukaryotes - 326 (source: NCBI BLink).  protein_id AT5G44680.1p  transcript_id AT5G44680.1  protein_id AT5G44680.1p  transcript_id AT5G44680.1  
At5g44690	chr5:018031631	0.0	C/18031631-18032293,18031448-18031542,18030454-18031329,18030164-18030371,18029894-18030020,18029707-18029726	AT5G44690.1  CDS  gene_syn K23L20.2, K23L20_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G20160.1); Has 4051 Blast hits to 2837 proteins in 227 species: Archae - 7; Bacteria - 148; Metazoa - 1410; Fungi - 253; Plants - 129; Viruses - 20; Other Eukaryotes - 2084 (source: NCBI BLink).  protein_id AT5G44690.1p  transcript_id AT5G44690.1  protein_id AT5G44690.1p  transcript_id AT5G44690.1  
At5g44700	chr5:018033513	0.0	C/18033513-18036894,18033049-18033425	AT5G44700.1  CDS  gene_syn EDA23, EMBRYO SAC DEVELOPMENT ARREST 23, GASSHO 2, GSO2, K23L20.3, K23L20_3  gene GSO2  function Encodes GASSHO2 (GSO2), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO2 and a homolog GSO1 (At4g20140) are required for the formation of a normal epidermal surface during embryogenesis.  go_component endomembrane system|GO:0012505||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_process epidermis development|GO:0008544|18088309|IGI  go_process embryo sac development|GO:0009553|15634699|IMP  go_process embryonic development|GO:0009790|18088309|IGI  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product GSO2 (GASSHO 2); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note GASSHO 2 (GSO2); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: embryonic development, transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation, embryo sac development, epidermis development; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591); BEST Arabidopsis thaliana protein match is: GSO1 (GASSHO1); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT4G20140.1); Has 207355 Blast hits to 105718 proteins in 3537 species: Archae - 110; Bacteria - 16743; Metazoa - 86145; Fungi - 8056; Plants - 71123; Viruses - 417; Other Eukaryotes - 24761 (source: NCBI BLink).  protein_id AT5G44700.1p  transcript_id AT5G44700.1  protein_id AT5G44700.1p  transcript_id AT5G44700.1  
At5g44705	chr5:018040788	0.0	W/18040788-18040861	AT5G44705.1  tRNA  gene_syn 67785.TRNA-THR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Thr (anticodon: AGT)  transcript_id AT5G44705.1  
At5g44710	chr5:018041621	0.0	W/18041621-18041838,18042232-18042322	AT5G44710.1  CDS  gene_syn K23L20.5, K23L20_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S27/S33, mitochondrial (InterPro:IPR013219); Has 56 Blast hits to 56 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 30; Plants - 16; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G44710.1p  transcript_id AT5G44710.1  protein_id AT5G44710.1p  transcript_id AT5G44710.1  
At5g44720	chr5:018043086	0.0	W/18043086-18043179,18043934-18044083,18044161-18044337,18044418-18044506,18044591-18044655,18044745-18044847,18044930-18045043,18045141-18045275	AT5G44720.1  CDS  gene_syn K23L20.6, K23L20_6  go_function catalytic activity|GO:0003824||IEA  go_function molybdenum ion binding|GO:0030151||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function Mo-molybdopterin cofactor sulfurase activity|GO:0008265||ISS  product molybdenum cofactor sulfurase family protein  note molybdenum cofactor sulfurase family protein; FUNCTIONS IN: molybdenum ion binding, Mo-molybdopterin cofactor sulfurase activity, pyridoxal phosphate binding, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), MOSC, N-terminal beta barrel (InterPro:IPR005303), Molybdenum cofactor sulfurase, C-terminal (InterPro:IPR005302); BEST Arabidopsis thaliana protein match is: molybdenum cofactor sulfurase family protein (TAIR:AT1G30910.1); Has 1262 Blast hits to 1242 proteins in 421 species: Archae - 2; Bacteria - 632; Metazoa - 290; Fungi - 178; Plants - 53; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT5G44720.1p  transcript_id AT5G44720.1  protein_id AT5G44720.1p  transcript_id AT5G44720.1  
At5g44720	chr5:018043086	0.0	W/18043086-18043179,18043934-18044083,18044161-18044337,18044418-18044506,18044591-18044655,18044745-18044862	AT5G44720.2  CDS  gene_syn K23L20.6, K23L20_6  go_function catalytic activity|GO:0003824||IEA  go_function molybdenum ion binding|GO:0030151||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function Mo-molybdopterin cofactor sulfurase activity|GO:0008265||ISS  product molybdenum cofactor sulfurase family protein  note molybdenum cofactor sulfurase family protein; FUNCTIONS IN: molybdenum ion binding, Mo-molybdopterin cofactor sulfurase activity, pyridoxal phosphate binding, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), MOSC, N-terminal beta barrel (InterPro:IPR005303), Molybdenum cofactor sulfurase, C-terminal (InterPro:IPR005302); BEST Arabidopsis thaliana protein match is: molybdenum cofactor sulfurase family protein (TAIR:AT1G30910.1); Has 1194 Blast hits to 1180 proteins in 410 species: Archae - 2; Bacteria - 606; Metazoa - 286; Fungi - 156; Plants - 52; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).  protein_id AT5G44720.2p  transcript_id AT5G44720.2  protein_id AT5G44720.2p  transcript_id AT5G44720.2  
At5g44730	chr5:018046256	0.0	C/18046256-18046519,18045968-18046174,18045588-18045884	AT5G44730.1  CDS  gene_syn K23L20.7, K23L20_7  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function phosphoglycolate phosphatase activity|GO:0008967||IEA  go_function hydrolase activity|GO:0016787||ISS  product haloacid dehalogenase-like hydrolase family protein  note haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity, phosphoglycolate phosphatase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), HAD-superfamily hydrolase, subfamily IA, REG-2-like (InterPro:IPR011949), HAD-superfamily hydrolase, subfamily IA, variant 1 (InterPro:IPR006439); Has 1264 Blast hits to 1264 proteins in 450 species: Archae - 147; Bacteria - 706; Metazoa - 181; Fungi - 57; Plants - 54; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT5G44730.1p  transcript_id AT5G44730.1  protein_id AT5G44730.1p  transcript_id AT5G44730.1  
At5g44730	chr5:018046256	0.0	C/18046256-18046519,18045968-18046174,18045588-18045884	AT5G44730.2  CDS  gene_syn K23L20.7, K23L20_7  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function phosphoglycolate phosphatase activity|GO:0008967||IEA  go_function hydrolase activity|GO:0016787||ISS  product haloacid dehalogenase-like hydrolase family protein  note haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), HAD-superfamily hydrolase, subfamily IA, REG-2-like (InterPro:IPR011949), HAD-superfamily hydrolase, subfamily IA, variant 1 (InterPro:IPR006439); Has 1264 Blast hits to 1264 proteins in 450 species: Archae - 147; Bacteria - 706; Metazoa - 181; Fungi - 57; Plants - 54; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT5G44730.2p  transcript_id AT5G44730.2  protein_id AT5G44730.2p  transcript_id AT5G44730.2  
At5g44740	chr5:018051141	0.0	C/18051141-18051197,18050835-18051005,18050586-18050750,18050408-18050511,18050051-18050170,18049727-18049850,18049420-18049533,18049123-18049338,18048921-18049020,18048699-18048829,18048325-18048444,18047903-18048247	AT5G44740.1  CDS  gene_syn K23L20.8, K23L20_8, POLH, Y-FAMILT DNA POLYMERASE H  gene POLH  function Y-family DNA polymerase. Catalyses translesion synthesis in response to UV damage. Functionally interacts with PCNA2. Has a ubiquitin binding motif.  go_component endomembrane system|GO:0012505||IEA  go_process DNA repair|GO:0006281||ISS  go_process response to UV-B|GO:0010224|18494853|IMP  go_process error-prone postreplication DNA repair|GO:0042276|18494853|IDA  go_function DNA-directed DNA polymerase activity|GO:0003887|18494853|IDA  product POLH (Y-FAMILT DNA POLYMERASE H); DNA-directed DNA polymerase  note Y-FAMILT DNA POLYMERASE H (POLH); FUNCTIONS IN: DNA-directed DNA polymerase activity; INVOLVED IN: DNA repair, response to UV-B, error-prone postreplication DNA repair; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: DNA-repair protein, UmuC-like (InterPro:IPR001126), DNA polymerase eta (InterPro:IPR017061), DNA-repair protein, UmuC-like, N-terminal (InterPro:IPR017963); BEST Arabidopsis thaliana protein match is: REV1; DNA-directed DNA polymerase (TAIR:AT5G44750.1); Has 4070 Blast hits to 4069 proteins in 1168 species: Archae - 140; Bacteria - 2650; Metazoa - 396; Fungi - 232; Plants - 68; Viruses - 2; Other Eukaryotes - 582 (source: NCBI BLink).  protein_id AT5G44740.1p  transcript_id AT5G44740.1  protein_id AT5G44740.1p  transcript_id AT5G44740.1  
At5g44740	chr5:018051704	0.0	C/18051704-18051779,18051302-18051422,18051100-18051211,18050835-18051005,18050586-18050750,18050408-18050511,18050051-18050170,18049727-18049850,18049420-18049533,18049123-18049338,18048921-18049020,18048699-18048829,18048325-18048444,18047903-18048247	AT5G44740.2  CDS  gene_syn K23L20.8, K23L20_8, POLH, Y-FAMILT DNA POLYMERASE H  gene POLH  function Y-family DNA polymerase. Catalyses translesion synthesis in response to UV damage. Functionally interacts with PCNA2. Has a ubiquitin binding motif.  go_process DNA repair|GO:0006281||ISS  go_process response to UV-B|GO:0010224|18494853|IMP  go_process error-prone postreplication DNA repair|GO:0042276|18494853|IDA  go_function DNA-directed DNA polymerase activity|GO:0003887|18494853|IDA  product POLH (Y-FAMILT DNA POLYMERASE H); DNA-directed DNA polymerase  note Y-FAMILT DNA POLYMERASE H (POLH); FUNCTIONS IN: DNA-directed DNA polymerase activity; INVOLVED IN: DNA repair, response to UV-B, error-prone postreplication DNA repair; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: DNA-repair protein, UmuC-like (InterPro:IPR001126), DNA polymerase eta (InterPro:IPR017061), DNA-repair protein, UmuC-like, N-terminal (InterPro:IPR017963); BEST Arabidopsis thaliana protein match is: REV1; DNA-directed DNA polymerase (TAIR:AT5G44750.1); Has 5002 Blast hits to 4970 proteins in 1233 species: Archae - 142; Bacteria - 2991; Metazoa - 422; Fungi - 259; Plants - 77; Viruses - 2; Other Eukaryotes - 1109 (source: NCBI BLink).  protein_id AT5G44740.2p  transcript_id AT5G44740.2  protein_id AT5G44740.2p  transcript_id AT5G44740.2  
At5g44750	chr5:018052669	0.0	W/18052669-18052835,18053045-18053189,18053376-18053491,18053568-18053644,18053800-18054290,18054505-18054648,18054895-18055027,18055127-18055215,18055292-18055342,18055422-18055625,18055796-18055915,18056301-18056393,18056514-18056573,18056668-18056754,18056909-18056992,18057125-18057197,18057538-18057606,18057748-18057846,18058089-18058343,18058437-18058510,18058633-18059201,18059327-18059387,18059537-18059581	AT5G44750.1  CDS  gene_syn ARABIDOPSIS THALIANA HOMOLOG OF REVERSIONLESS 1, ATREV1, K23L20.9, K23L20_9, REV1  gene REV1  function Homologous to Y-family DNA polymerases, contains BRCT domain. Mutants are sensitive to UV-B radiation. Gene is involved in damage-tolerance mechanisms through translesion synthesis(TLS).  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_process DNA repair|GO:0006281||ISS  go_process response to DNA damage stimulus|GO:0006974|15908599|IMP  go_process response to UV-B|GO:0010224|15908599|IMP  go_function DNA-directed DNA polymerase activity|GO:0003887|17827267|IDA  product REV1; DNA-directed DNA polymerase  note REV1; FUNCTIONS IN: DNA-directed DNA polymerase activity; INVOLVED IN: DNA repair, response to UV-B, response to DNA damage stimulus; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase, Y-family, little finger domain (InterPro:IPR017961), DNA-repair protein, UmuC-like (InterPro:IPR001126), DNA-repair protein, UmuC-like, N-terminal (InterPro:IPR017963), DNA repair protein, Rev1 (InterPro:IPR012112), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: DNA-directed DNA polymerase/ damaged DNA binding (TAIR:AT1G49980.1); Has 6717 Blast hits to 6522 proteins in 1289 species: Archae - 142; Bacteria - 3444; Metazoa - 582; Fungi - 249; Plants - 80; Viruses - 2; Other Eukaryotes - 2218 (source: NCBI BLink).  protein_id AT5G44750.1p  transcript_id AT5G44750.1  protein_id AT5G44750.1p  transcript_id AT5G44750.1  
At5g44750	chr5:018052669	0.0	W/18052669-18052835,18053045-18053189,18053376-18053491,18053568-18053644,18053800-18054290,18054505-18054648,18054895-18055027,18055127-18055215,18055292-18055342,18055422-18055625,18055796-18055915,18056301-18056393,18056514-18056585,18056668-18056754,18056909-18056992,18057125-18057197,18057538-18057606,18057748-18057846,18058089-18058343,18058437-18058510,18058633-18059201,18059327-18059387,18059537-18059581	AT5G44750.2  CDS  gene_syn ARABIDOPSIS THALIANA HOMOLOG OF REVERSIONLESS 1, ATREV1, K23L20.9, K23L20_9, REV1  gene REV1  function Homologous to Y-family DNA polymerases, contains BRCT domain. Mutants are sensitive to UV-B radiation. Gene is involved in damage-tolerance mechanisms through translesion synthesis(TLS).  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_process DNA repair|GO:0006281||ISS  go_process response to DNA damage stimulus|GO:0006974|15908599|IMP  go_process response to UV-B|GO:0010224|15908599|IMP  go_function DNA-directed DNA polymerase activity|GO:0003887|17827267|IDA  product REV1; DNA-directed DNA polymerase  note REV1; FUNCTIONS IN: DNA-directed DNA polymerase activity; INVOLVED IN: DNA repair, response to UV-B, response to DNA damage stimulus; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase, Y-family, little finger domain (InterPro:IPR017961), DNA-repair protein, UmuC-like (InterPro:IPR001126), DNA-repair protein, UmuC-like, N-terminal (InterPro:IPR017963), DNA repair protein, Rev1 (InterPro:IPR012112), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: DNA-directed DNA polymerase/ damaged DNA binding (TAIR:AT1G49980.1); Has 6671 Blast hits to 6476 proteins in 1288 species: Archae - 142; Bacteria - 3426; Metazoa - 582; Fungi - 247; Plants - 80; Viruses - 2; Other Eukaryotes - 2192 (source: NCBI BLink).  protein_id AT5G44750.2p  transcript_id AT5G44750.2  protein_id AT5G44750.2p  transcript_id AT5G44750.2  
At5g44760	chr5:018060586	0.0	W/18060586-18061320,18061376-18061729,18062150-18062326,18062458-18062549,18062686-18062764	AT5G44760.1  CDS  gene_syn K23L20.10, K23L20_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal, plant (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT4G20080.1); Has 354 Blast hits to 204 proteins in 14 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 353; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G44760.1p  transcript_id AT5G44760.1  protein_id AT5G44760.1p  transcript_id AT5G44760.1  
At5g44770	chr5:018065055	0.0	W/18065055-18066680	AT5G44770.1  CDS  gene_syn K23L20.11, K23L20_11  go_process intracellular signaling cascade|GO:0007242||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular signaling cascade; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14980.1); Has 1046 Blast hits to 489 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 0; Plants - 1002; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT5G44770.1p  transcript_id AT5G44770.1  protein_id AT5G44770.1p  transcript_id AT5G44770.1  
At5g44780	chr5:018068100	0.0	W/18068100-18068449,18068534-18068631,18068725-18068790,18068887-18070544	AT5G44780.1  CDS  gene_syn K23L20.12, K23L20_12  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G20020.2); Has 8498 Blast hits to 5294 proteins in 459 species: Archae - 4; Bacteria - 737; Metazoa - 4009; Fungi - 1297; Plants - 1104; Viruses - 43; Other Eukaryotes - 1304 (source: NCBI BLink).  protein_id AT5G44780.1p  transcript_id AT5G44780.1  protein_id AT5G44780.1p  transcript_id AT5G44780.1  
At5g44785	chr5:018072646	0.0	C/18072646-18073010,18072426-18072564,18072198-18072297,18071927-18072039,18071697-18071847,18071546-18071610,18071250-18071442,18071099-18071163,18070877-18071008	AT5G44785.1  CDS  gene_syn ORGANELLAR SINGLE-STRANDED DNA BINDING PROTEIN 3, OSB3  gene OSB3  go_function single-stranded DNA binding|GO:0003697||IEA  go_component mitochondrion|GO:0005739|17189341|IDA  go_component chloroplast|GO:0009507|17189341|IDA  go_process biological_process|GO:0008150||ND  product OSB3 (ORGANELLAR SINGLE-STRANDED DNA BINDING PROTEIN 3); single-stranded DNA binding  note ORGANELLAR SINGLE-STRANDED DNA BINDING PROTEIN 3 (OSB3); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Primosome PriB/single-strand DNA-binding (InterPro:IPR000424); BEST Arabidopsis thaliana protein match is: PTAC9 (PLASTID TRANSCRIPTIONALLY ACTIVE 9); single-stranded DNA binding (TAIR:AT4G20010.2); Has 171 Blast hits to 87 proteins in 16 species: Archae - 0; Bacteria - 16; Metazoa - 1; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G44785.1p  transcript_id AT5G44785.1  protein_id AT5G44785.1p  transcript_id AT5G44785.1  
At5g44785	chr5:018072646	0.0	C/18072646-18073010,18072426-18072564,18072198-18072297,18071927-18072039,18071697-18071847,18071546-18071616,18071250-18071442,18071099-18071163,18070877-18071008	AT5G44785.2  CDS  gene_syn ORGANELLAR SINGLE-STRANDED DNA BINDING PROTEIN 3, OSB3  gene OSB3  go_function single-stranded DNA binding|GO:0003697||IEA  go_component mitochondrion|GO:0005739|17189341|IDA  go_component chloroplast|GO:0009507|17189341|IDA  go_process biological_process|GO:0008150||ND  product OSB3 (ORGANELLAR SINGLE-STRANDED DNA BINDING PROTEIN 3); single-stranded DNA binding  note ORGANELLAR SINGLE-STRANDED DNA BINDING PROTEIN 3 (OSB3); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Primosome PriB/single-strand DNA-binding (InterPro:IPR000424); BEST Arabidopsis thaliana protein match is: PTAC9 (PLASTID TRANSCRIPTIONALLY ACTIVE 9); single-stranded DNA binding (TAIR:AT4G20010.2); Has 170 Blast hits to 86 proteins in 15 species: Archae - 0; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G44785.2p  transcript_id AT5G44785.2  protein_id AT5G44785.2p  transcript_id AT5G44785.2  
At5g44790	chr5:018079500	0.0	C/18079500-18079817,18078781-18079380,18078247-18078676,18077754-18078079,18077577-18077635,18077142-18077484,18076856-18077050,18076503-18076760,18075846-18076322	AT5G44790.1  CDS  gene_syn HMA7, K23L20.14, K23L20_14, RAN1, RESPONSIVE-TO-ANTAGONIST 1  gene RAN1  function ATP dependent copper transporter vital for ethylene response pathway  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process response to ethylene stimulus|GO:0009723|16961732|IMP  go_process ethylene mediated signaling pathway|GO:0009873|10319818|IMP  go_process ethylene mediated signaling pathway|GO:0009873|10319818|TAS  go_process ethylene mediated signaling pathway|GO:0009873|10381874|TAS  go_process ethylene mediated signaling pathway|GO:0009873|10715325|TAS  go_process regulation of stomatal movement|GO:0010119|16961732|IMP  go_function copper ion transmembrane transporter activity|GO:0005375|10319818|IGI  go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662||ISS  product RAN1 (RESPONSIVE-TO-ANTAGONIST 1); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism / copper ion transmembrane transporter  note RESPONSIVE-TO-ANTAGONIST 1 (RAN1); FUNCTIONS IN: copper ion transmembrane transporter activity, ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: response to ethylene stimulus, ethylene mediated signaling pathway, regulation of stomatal movement; LOCATED IN: Golgi apparatus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121), ATPase, P type, cation/copper-transporter (InterPro:IPR006403), ATPase, P-type, ATPase-associated region (InterPro:IPR008250), Heavy-metal-associated, conserved site (InterPro:IPR017969), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase 1, copper-transporting (InterPro:IPR001877), ATPase, P-type, heavy metal translocating (InterPro:IPR006416), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), Copper ion-binding (InterPro:IPR006122), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: HMA5 (HEAVY METAL ATPASE 5); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism (TAIR:AT1G63440.1); Has 27007 Blast hits to 19492 proteins in 2068 species: Archae - 653; Bacteria - 15238; Metazoa - 4676; Fungi - 1741; Plants - 1130; Viruses - 3; Other Eukaryotes - 3566 (source: NCBI BLink).  protein_id AT5G44790.1p  transcript_id AT5G44790.1  protein_id AT5G44790.1p  transcript_id AT5G44790.1  
At5g44800	chr5:018091944	0.0	C/18091944-18092162,18091748-18091849,18090893-18091648,18090165-18090260,18087421-18090033,18086970-18087184,18086793-18086907,18086614-18086696,18085776-18086301,18083659-18085662	AT5G44800.1  CDS  gene_syn CHR4, CHROMATIN REMODELING 4, K23L20.15, K23L20_15, MI-2-LIKE  gene CHR4  go_component chromatin|GO:0000785||IEA  go_component nucleus|GO:0005634||IEA  go_process chromatin assembly or disassembly|GO:0006333||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function chromatin binding|GO:0003682||IEA  go_function helicase activity|GO:0004386||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process chromatin assembly or disassembly|GO:0006333||ISS  go_function DNA binding|GO:0003677||ISS  go_function chromatin binding|GO:0003682||ISS  go_function helicase activity|GO:0004386||ISS  go_function ATP binding|GO:0005524||ISS  product CHR4 (CHROMATIN REMODELING 4); ATP binding / DNA binding / chromatin binding / helicase/ nucleic acid binding / protein binding / zinc ion binding  note CHROMATIN REMODELING 4 (CHR4); FUNCTIONS IN: in 7 functions; INVOLVED IN: chromatin assembly or disassembly, regulation of transcription; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Chromo domain-like (InterPro:IPR016197), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: PKL (PICKLE); ATPase/ DNA binding / DNA helicase (TAIR:AT2G25170.1); Has 29727 Blast hits to 21275 proteins in 1338 species: Archae - 76; Bacteria - 3570; Metazoa - 13217; Fungi - 4558; Plants - 1766; Viruses - 303; Other Eukaryotes - 6237 (source: NCBI BLink).  protein_id AT5G44800.1p  transcript_id AT5G44800.1  protein_id AT5G44800.1p  transcript_id AT5G44800.1  
At5g44820	chr5:018097304	0.0	C/18097304-18097558,18096814-18097179,18095795-18096277	AT5G44820.1  CDS  gene_syn K23L20.17, K23L20_17  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19970.1); Has 235 Blast hits to 231 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 219; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT5G44820.1p  transcript_id AT5G44820.1  protein_id AT5G44820.1p  transcript_id AT5G44820.1  
At5g44830	chr5:018101772	0.0	C/18101772-18101885,18101536-18101679,18101042-18101249,18100863-18100944,18100658-18100766,18100437-18100550,18100128-18100355	AT5G44830.1  CDS  gene_syn K23L20.18, K23L20_18  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_component cellular_component|GO:0005575||ND  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT5G44840.1); Has 2396 Blast hits to 2384 proteins in 302 species: Archae - 2; Bacteria - 447; Metazoa - 8; Fungi - 996; Plants - 875; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT5G44830.1p  transcript_id AT5G44830.1  protein_id AT5G44830.1p  transcript_id AT5G44830.1  
At5g44840	chr5:018107125	0.0	C/18107125-18107127,18106897-18107016,18106539-18106676,18106307-18106450,18105800-18106007,18105613-18105694,18105395-18105503,18105176-18105289,18104851-18105078	AT5G44840.1  CDS  gene_syn K21C13.1, K21C13_1  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT5G44830.1); Has 2417 Blast hits to 2403 proteins in 304 species: Archae - 2; Bacteria - 457; Metazoa - 8; Fungi - 992; Plants - 886; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT5G44840.1p  transcript_id AT5G44840.1  protein_id AT5G44840.1p  transcript_id AT5G44840.1  
At5g44850	chr5:018108304	0.0	W/18108304-18108689,18108843-18109032,18109102-18109236,18109309-18109593	AT5G44850.1  CDS  gene_syn K21C13.2, K21C13_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, 4 leaf senescence stage, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G05080.1); Has 469 Blast hits to 454 proteins in 19 species: Archae - 0; Bacteria - 2; Metazoa - 80; Fungi - 0; Plants - 386; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G44850.1p  transcript_id AT5G44850.1  protein_id AT5G44850.1p  transcript_id AT5G44850.1  
At5g44860	chr5:018110688	0.0	C/18110688-18111653	AT5G44860.1  CDS  gene_syn K21C13.3, K21C13_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19950.1); Has 123 Blast hits to 121 proteins in 16 species: Archae - 0; Bacteria - 6; Metazoa - 1; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G44860.1p  transcript_id AT5G44860.1  protein_id AT5G44860.1p  transcript_id AT5G44860.1  
At5g44870	chr5:018114666	0.0	W/18114666-18115129,18115215-18116529,18116655-18116969,18117056-18117958,18118093-18118608	AT5G44870.1  CDS  gene_syn K21C13.4, K21C13_4  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: protein binding, transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G36150.1); Has 16681 Blast hits to 11684 proteins in 460 species: Archae - 14; Bacteria - 1156; Metazoa - 2152; Fungi - 77; Plants - 12461; Viruses - 0; Other Eukaryotes - 821 (source: NCBI BLink).  protein_id AT5G44870.1p  transcript_id AT5G44870.1  protein_id AT5G44870.1p  transcript_id AT5G44870.1  
At5g44875	chr5:018121331	0.0	W/18121331-18124682	AT5G44875.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 3.3e-87 P-value blast match to Q9SLM0 /314-478 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At5g44880	chr5:018125668	0.0	W/18125668-18126153	AT5G44880.1  mRNA_TE_gene  pseudo  gene_syn K21C13.6, K21C13_6  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14020.1)  
At5g44890	chr5:018126684	0.0	C/18126684-18131125	AT5G44890.1  mRNA_TE_gene  pseudo  gene_syn K21C13.7  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G08740.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G29240.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G26530.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At5g44894	chr5:018133145	0.0	W/18133145-18133297	AT5G44894.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G44894.1p  transcript_id AT5G44894.1  protein_id AT5G44894.1p  transcript_id AT5G44894.1  
At5g44900	chr5:018135495	0.0	W/18135495-18135985,18136116-18136383	AT5G44900.1  CDS  gene_syn K21C13.8, K21C13_8  go_component intrinsic to membrane|GO:0031224||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_process defense response|GO:0006952||ISS  product transmembrane receptor  note transmembrane receptor; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, N-terminal protein myristoylation, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: transmembrane receptor (TAIR:AT5G45000.1); Has 845 Blast hits to 793 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 843; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G44900.1p  transcript_id AT5G44900.1  protein_id AT5G44900.1p  transcript_id AT5G44900.1  
At5g44910	chr5:018137354	0.0	W/18137354-18137823,18137980-18138235	AT5G44910.1  CDS  gene_syn K21C13.9, K21C13_9  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_process defense response|GO:0006952||ISS  product Toll-Interleukin-Resistance (TIR) domain-containing protein  note Toll-Interleukin-Resistance (TIR) domain-containing protein; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: transmembrane receptor (TAIR:AT5G45000.1); Has 819 Blast hits to 775 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 819; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G44910.1p  transcript_id AT5G44910.1  protein_id AT5G44910.1p  transcript_id AT5G44910.1  
At5g44920	chr5:018138965	0.0	W/18138965-18139400,18139440-18139467,18139730-18139994	AT5G44920.2  CDS  gene_syn K21C13.10, K21C13_10  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process defense response|GO:0006952||ISS  product Toll-Interleukin-Resistance (TIR) domain-containing protein  note Toll-Interleukin-Resistance (TIR) domain-containing protein; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR class), putative (TAIR:AT4G19920.1); Has 819 Blast hits to 787 proteins in 37 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 817; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G44920.2p  transcript_id AT5G44920.2  protein_id AT5G44920.2p  transcript_id AT5G44920.2  
At5g44920	chr5:018138965	0.0	W/18138965-18139467,18139730-18139994	AT5G44920.1  CDS  gene_syn K21C13.10, K21C13_10  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process defense response|GO:0006952||ISS  product Toll-Interleukin-Resistance (TIR) domain-containing protein  note Toll-Interleukin-Resistance (TIR) domain-containing protein; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR class), putative (TAIR:AT4G19920.1); Has 830 Blast hits to 796 proteins in 38 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 827; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G44920.1p  transcript_id AT5G44920.1  protein_id AT5G44920.1p  transcript_id AT5G44920.1  
At5g44930	chr5:018141368	0.0	C/18141368-18142144,18140904-18141269,18140626-18140814	AT5G44930.1  CDS  gene_syn ARABINAN DEFICIENT 2, ARABINOSYLTRANSFERASE, ARAD2, K21C13.11, K21C13_11  gene ARAD2  function Encodes a putative arabinosyltransferase.  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product ARAD2 (ARABINAN DEFICIENT 2); catalytic  note ARABINAN DEFICIENT 2 (ARAD2); FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: ARAD1 (ARABINAN DEFICIENT 1); catalytic/ transferase, transferring glycosyl groups (TAIR:AT2G35100.1); Has 770 Blast hits to 766 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 208; Fungi - 4; Plants - 515; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT5G44930.1p  transcript_id AT5G44930.1  protein_id AT5G44930.1p  transcript_id AT5G44930.1  
At5g44930	chr5:018141368	0.0	C/18141368-18142144,18140904-18141269,18140626-18140814	AT5G44930.2  CDS  gene_syn ARABINAN DEFICIENT 2, ARABINOSYLTRANSFERASE, ARAD2, K21C13.11, K21C13_11  gene ARAD2  function Encodes a putative arabinosyltransferase.  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product ARAD2 (ARABINAN DEFICIENT 2); catalytic  note ARABINAN DEFICIENT 2 (ARAD2); FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: ARAD1 (ARABINAN DEFICIENT 1); catalytic/ transferase, transferring glycosyl groups (TAIR:AT2G35100.1); Has 770 Blast hits to 766 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 208; Fungi - 4; Plants - 515; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT5G44930.2p  transcript_id AT5G44930.2  protein_id AT5G44930.2p  transcript_id AT5G44930.2  
At5g44925	chr5:018142274	0.0	C/18142274-18146632	AT5G44925.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At5g44940	chr5:018149369	0.0	W/18149369-18149956,18150173-18150295,18150386-18150538,18150623-18150892	AT5G44940.1  CDS  gene_syn K21C13.13, K21C13_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G44960.1); Has 1231 Blast hits to 1187 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1231; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G44940.1p  transcript_id AT5G44940.1  protein_id AT5G44940.1p  transcript_id AT5G44940.1  
At5g44950	chr5:018151665	0.0	W/18151665-18152564,18152663-18152803,18152889-18153164	AT5G44950.1  CDS  gene_syn K21C13.14, K21C13_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G26030.3); Has 1361 Blast hits to 1332 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1361; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G44950.1p  transcript_id AT5G44950.1  protein_id AT5G44950.1p  transcript_id AT5G44950.1  
At5g44960	chr5:018153852	0.0	W/18153852-18154466,18154542-18154769,18154849-18154989,18155125-18155391	AT5G44960.1  CDS  gene_syn K21C13.15, K21C13_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G44980.1); Has 1086 Blast hits to 1062 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1086; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G44960.1p  transcript_id AT5G44960.1  protein_id AT5G44960.1p  transcript_id AT5G44960.1  
At5g44970	chr5:018155837	0.0	W/18155837-18155968,18156127-18156735,18156825-18156965,18157053-18157340	AT5G44970.1  CDS  gene_syn K21C13.16, K21C13_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G44950.1); Has 469 Blast hits to 464 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 469; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G44970.1p  transcript_id AT5G44970.1  protein_id AT5G44970.1p  transcript_id AT5G44970.1  
At5g44973	chr5:018158116	0.0	C/18158116-18158180,18157691-18157865	AT5G44973.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G44973.1p  transcript_id AT5G44973.1  protein_id AT5G44973.1p  transcript_id AT5G44973.1  
At5g44980	chr5:018160600	0.0	W/18160600-18161499,18161575-18161715,18161792-18162058	AT5G44980.1  CDS  gene_syn K21C13.17, K21C13_17  go_component cellular_component|GO:0005575||ND  product F-box family protein  note F-box family protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G44960.1); Has 1271 Blast hits to 1239 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1271; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G44980.1p  transcript_id AT5G44980.1  protein_id AT5G44980.1p  transcript_id AT5G44980.1  
At5g44990	chr5:018163370	0.0	W/18163370-18163573,18163640-18163816,18163924-18164148,18164231-18164359,18164451-18164768	AT5G44990.1  CDS  gene_syn K21C13.18, K21C13_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Glutathione S-transferase, predicted (InterPro:IPR016639), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19880.1); Has 1632 Blast hits to 1632 proteins in 489 species: Archae - 12; Bacteria - 905; Metazoa - 23; Fungi - 156; Plants - 57; Viruses - 0; Other Eukaryotes - 479 (source: NCBI BLink).  protein_id AT5G44990.1p  transcript_id AT5G44990.1  protein_id AT5G44990.1p  transcript_id AT5G44990.1  
At5g44990	chr5:018163370	0.0	W/18163370-18163573,18163640-18163816,18163924-18164148,18164231-18164359,18164451-18164768	AT5G44990.2  CDS  gene_syn K21C13.18, K21C13_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Glutathione S-transferase, predicted (InterPro:IPR016639), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19880.1); Has 1632 Blast hits to 1632 proteins in 489 species: Archae - 12; Bacteria - 905; Metazoa - 23; Fungi - 156; Plants - 57; Viruses - 0; Other Eukaryotes - 479 (source: NCBI BLink).  protein_id AT5G44990.2p  transcript_id AT5G44990.2  protein_id AT5G44990.2p  transcript_id AT5G44990.2  
At5g44990	chr5:018163685	0.0	W/18163685-18163816,18163924-18164148,18164231-18164359,18164451-18164768	AT5G44990.3  CDS  gene_syn K21C13.18, K21C13_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Glutathione S-transferase, predicted (InterPro:IPR016639), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19880.1); Has 1562 Blast hits to 1562 proteins in 487 species: Archae - 12; Bacteria - 896; Metazoa - 23; Fungi - 156; Plants - 57; Viruses - 0; Other Eukaryotes - 418 (source: NCBI BLink).  protein_id AT5G44990.3p  transcript_id AT5G44990.3  protein_id AT5G44990.3p  transcript_id AT5G44990.3  
At5g45000	chr5:018165427	0.0	W/18165427-18165908,18166039-18166145,18166245-18166746,18166837-18167005	AT5G45000.1  CDS  gene_syn K21C13.19, K21C13_19  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_process defense response|GO:0006952||ISS  product transmembrane receptor  note transmembrane receptor; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: structural molecule/ transmembrane receptor (TAIR:AT1G51270.2); Has 1665 Blast hits to 833 proteins in 53 species: Archae - 0; Bacteria - 21; Metazoa - 0; Fungi - 0; Plants - 1641; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G45000.1p  transcript_id AT5G45000.1  protein_id AT5G45000.1p  transcript_id AT5G45000.1  
At5g45010	chr5:018168131	0.0	C/18168131-18168221,18167451-18167581	AT5G45010.1  CDS  gene_syn ATDSS1(V), Arabidopsis dss1 homolog on chromosome V, K21C13.20, K21C13_20  gene ATDSS1(V)  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ATDSS1(V) (Arabidopsis dss1 homolog on chromosome V)  note Arabidopsis dss1 homolog on chromosome V (ATDSS1(V)); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DSS1/SEM1 (InterPro:IPR007834); BEST Arabidopsis thaliana protein match is: ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) (TAIR:AT1G64750.2); Has 233 Blast hits to 233 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 117; Fungi - 57; Plants - 43; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT5G45010.1p  transcript_id AT5G45010.1  protein_id AT5G45010.1p  transcript_id AT5G45010.1  
At5g45020	chr5:018169206	0.0	W/18169206-18169418,18169499-18169675,18169755-18169979,18170046-18170174,18170255-18170488	AT5G45020.1  CDS  gene_syn K21C13.21, K21C13_21  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutathione S-transferase, predicted (InterPro:IPR016639), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19880.1); Has 1632 Blast hits to 1632 proteins in 489 species: Archae - 12; Bacteria - 907; Metazoa - 22; Fungi - 156; Plants - 57; Viruses - 0; Other Eukaryotes - 478 (source: NCBI BLink).  protein_id AT5G45020.1p  transcript_id AT5G45020.1  protein_id AT5G45020.1p  transcript_id AT5G45020.1  
At5g45030	chr5:018172981	0.0	W/18172981-18173478,18173665-18173808,18173893-18174133,18174218-18174724,18174805-18175238	AT5G45030.1  CDS  gene_syn K21C13.22, K21C13_22  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product catalytic  note catalytic; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Peptidase, trypsin-like serine and cysteine (InterPro:IPR009003); BEST Arabidopsis thaliana protein match is: catalytic (TAIR:AT2G35155.1); Has 57 Blast hits to 57 proteins in 16 species: Archae - 0; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G45030.1p  transcript_id AT5G45030.1  protein_id AT5G45030.1p  transcript_id AT5G45030.1  
At5g45030	chr5:018172981	0.0	W/18172981-18173478,18173665-18173808,18173893-18174133,18174218-18174724,18174805-18175238	AT5G45030.2  CDS  gene_syn K21C13.22, K21C13_22  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product catalytic  note catalytic; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Peptidase, trypsin-like serine and cysteine (InterPro:IPR009003); BEST Arabidopsis thaliana protein match is: catalytic (TAIR:AT2G35155.1); Has 57 Blast hits to 57 proteins in 16 species: Archae - 0; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G45030.2p  transcript_id AT5G45030.2  protein_id AT5G45030.2p  transcript_id AT5G45030.2  
At5g45040	chr5:018176789	0.0	C/18176789-18176851,18176566-18176701,18176106-18176203,18175987-18176018,18175794-18175857,18175566-18175700	AT5G45040.1  CDS  gene_syn K21C13.23, K21C13_23  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function electron carrier activity|GO:0009055||ISS  product cytochrome c6 (ATC6)  note cytochrome c6 (ATC6); FUNCTIONS IN: electron carrier activity, iron ion binding, heme binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c, class I (InterPro:IPR003088), Cytochrome c, monohaem (InterPro:IPR009056); Has 411 Blast hits to 411 proteins in 105 species: Archae - 0; Bacteria - 225; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink).  protein_id AT5G45040.1p  transcript_id AT5G45040.1  protein_id AT5G45040.1p  transcript_id AT5G45040.1  
At5g45050	chr5:018181456	0.0	C/18181456-18181805,18180080-18181196,18179697-18179996,18178776-18179609,18177813-18178696,18177609-18177722,18177016-18177535	AT5G45050.1  CDS  gene_syn ATWRKY16, K21C13.24, K21C13_24, TOLERANT TO TOBACCO RINGSPOT NEPOVIRUS 1, TTR1, WRKY16  gene TTR1  function Encodes a member of WRKY Transcription Factor (Group II-e) that confers resistance to tobacco ringspot nepovirus.  go_component plasma membrane|GO:0005886|17151019|IDA  go_process response to virus|GO:0009615|8870272|IMP  go_process plant-type hypersensitive response|GO:0009626|8870272|IMP  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function protein binding|GO:0005515||NAS  product TTR1; protein binding / transcription factor  note TTR1; FUNCTIONS IN: protein binding, transcription factor activity; INVOLVED IN: response to virus, plant-type hypersensitive response; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), NB-ARC (InterPro:IPR002182), Leucine-rich repeat 3 (InterPro:IPR011713), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: RRS1 (RESISTANT TO RALSTONIA SOLANACEARUM 1); DNA binding / transcription factor (TAIR:AT5G45260.1); Has 13816 Blast hits to 10491 proteins in 447 species: Archae - 7; Bacteria - 533; Metazoa - 186; Fungi - 3; Plants - 12819; Viruses - 4; Other Eukaryotes - 264 (source: NCBI BLink).  protein_id AT5G45050.1p  transcript_id AT5G45050.1  protein_id AT5G45050.1p  transcript_id AT5G45050.1  
At5g45050	chr5:018181456	0.0	C/18181456-18181805,18180080-18181196,18179697-18179996,18179369-18179609,18178776-18179284,18177813-18178696,18177609-18177722,18177016-18177535	AT5G45050.2  CDS  gene_syn ATWRKY16, K21C13.24, K21C13_24, TOLERANT TO TOBACCO RINGSPOT NEPOVIRUS 1, TTR1, WRKY16  gene TTR1  function Encodes a member of WRKY Transcription Factor (Group II-e) that confers resistance to tobacco ringspot nepovirus.  go_component plasma membrane|GO:0005886|17151019|IDA  go_process response to virus|GO:0009615|8870272|IMP  go_process plant-type hypersensitive response|GO:0009626|8870272|IMP  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function protein binding|GO:0005515||NAS  product TTR1; protein binding / transcription factor  note TTR1; FUNCTIONS IN: protein binding, transcription factor activity; INVOLVED IN: response to virus, plant-type hypersensitive response; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: RRS1 (RESISTANT TO RALSTONIA SOLANACEARUM 1); DNA binding / transcription factor (TAIR:AT5G45260.1); Has 13253 Blast hits to 10395 proteins in 414 species: Archae - 3; Bacteria - 409; Metazoa - 163; Fungi - 9; Plants - 12343; Viruses - 2; Other Eukaryotes - 324 (source: NCBI BLink).  protein_id AT5G45050.2p  transcript_id AT5G45050.2  protein_id AT5G45050.2p  transcript_id AT5G45050.2  
At5g45060	chr5:018182038	0.0	W/18182038-18182507,18182742-18183927,18184028-18184342,18184435-18185247,18185354-18186067	AT5G45060.1  CDS  gene_syn K17O22.2, K17O22_2  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: RPS4 (RESISTANT TO P. SYRINGAE 4); receptor (TAIR:AT5G45250.1); Has 16868 Blast hits to 12120 proteins in 514 species: Archae - 20; Bacteria - 1191; Metazoa - 2382; Fungi - 79; Plants - 12485; Viruses - 0; Other Eukaryotes - 711 (source: NCBI BLink).  protein_id AT5G45060.1p  transcript_id AT5G45060.1  protein_id AT5G45060.1p  transcript_id AT5G45060.1  
At5g45070	chr5:018188884	0.0	C/18188884-18189362,18188483-18188680,18187899-18188286	AT5G45070.1  CDS  gene_syn AtPP2-A8, K17O22.3, K17O22_3, Phloem protein 2-A8  gene AtPP2-A8  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_process defense response|GO:0006952||ISS  go_function carbohydrate binding|GO:0030246|12529520|ISS  product AtPP2-A8 (Phloem protein 2-A8); carbohydrate binding  note Phloem protein 2-A8 (AtPP2-A8); FUNCTIONS IN: carbohydrate binding; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: AtPP2-A6 (Phloem protein 2-A6); carbohydrate binding (TAIR:AT5G45080.1); Has 948 Blast hits to 895 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 948; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G45070.1p  transcript_id AT5G45070.1  protein_id AT5G45070.1p  transcript_id AT5G45070.1  
At5g45080	chr5:018192726	0.0	C/18192726-18193207,18192328-18192639,18191575-18191959	AT5G45080.1  CDS  gene_syn AtPP2-A6, K17O22.4, K17O22_4, Phloem protein 2-A6  gene AtPP2-A6  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_process defense response|GO:0006952||ISS  go_function carbohydrate binding|GO:0030246|12529520|ISS  product AtPP2-A6 (Phloem protein 2-A6); carbohydrate binding  note Phloem protein 2-A6 (AtPP2-A6); FUNCTIONS IN: carbohydrate binding; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: AtPP2-A8 (Phloem protein 2-A8); carbohydrate binding (TAIR:AT5G45070.1); Has 998 Blast hits to 956 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 998; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G45080.1p  transcript_id AT5G45080.1  protein_id AT5G45080.1p  transcript_id AT5G45080.1  
At5g45082	chr5:018194299	0.0	C/18194299-18196851	AT5G45082.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 4.1e-38 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At5g45085	chr5:018197690	0.0	C/18197690-18201523	AT5G45085.1  mRNA_TE_gene  pseudo  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 1.2e-148 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus)  
At5g45090	chr5:018204860	0.0	C/18204860-18205000,18204246-18204523,18203764-18203958,18202753-18203137	AT5G45090.1  CDS  gene_syn AtPP2-A7, K17O22.8, K17O22_8, Phloem protein 2-A7  gene AtPP2-A7  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_process defense response|GO:0006952||ISS  go_function carbohydrate binding|GO:0030246|12529520|ISS  product AtPP2-A7 (Phloem protein 2-A7); carbohydrate binding  note Phloem protein 2-A7 (AtPP2-A7); FUNCTIONS IN: carbohydrate binding; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: AtPP2-A6 (Phloem protein 2-A6); carbohydrate binding (TAIR:AT5G45080.1); Has 359 Blast hits to 345 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 359; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G45090.1p  transcript_id AT5G45090.1  protein_id AT5G45090.1p  transcript_id AT5G45090.1  
At5g45095	chr5:018207841	0.0	W/18207841-18209025	AT5G45095.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08593.1); Has 9 Blast hits to 9 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G45095.1p  transcript_id AT5G45095.1  protein_id AT5G45095.1p  transcript_id AT5G45095.1  
At5g45100	chr5:018218769	0.0	W/18218769-18218824,18218913-18219741	AT5G45100.1  CDS  gene_syn K17O22.9, K17O22_9  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: RING; protein binding / zinc ion binding (TAIR:AT4G19700.1); Has 338 Blast hits to 338 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 2; Plants - 184; Viruses - 10; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT5G45100.1p  transcript_id AT5G45100.1  protein_id AT5G45100.1p  transcript_id AT5G45100.1  
At5g45100	chr5:018218938	0.0	W/18218938-18219741	AT5G45100.2  CDS  gene_syn K17O22.9, K17O22_9  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING; protein binding / zinc ion binding (TAIR:AT4G19700.1); Has 328 Blast hits to 328 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 102; Fungi - 2; Plants - 184; Viruses - 10; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT5G45100.2p  transcript_id AT5G45100.2  protein_id AT5G45100.2p  transcript_id AT5G45100.2  
At5g45105	chr5:018224359	0.0	C/18224359-18224946,18224082-18224179,18223453-18223666	AT5G45105.2  CDS  gene_syn ZINC TRANSPORTER 8 PRECURSOR, ZIP8  gene ZIP8  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|ISS  go_process cation transport|GO:0006812||ISS  go_function cation transmembrane transporter activity|GO:0008324|11500563|ISS  go_function cation transmembrane transporter activity|GO:0008324||ISS  product ZIP8 (ZINC TRANSPORTER 8 PRECURSOR); cation transmembrane transporter  note ZINC TRANSPORTER 8 PRECURSOR (ZIP8); FUNCTIONS IN: cation transmembrane transporter activity; INVOLVED IN: cation transport; LOCATED IN: endomembrane system, integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal and plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: IRT1 (iron-regulated transporter 1); cadmium ion transmembrane transporter/ copper uptake transmembrane transporter/ iron ion transmembrane transporter/ manganese ion transmembrane transporter/ zinc ion transmembrane transporter (TAIR:AT4G19690.2).  protein_id AT5G45105.2p  transcript_id AT5G45105.2  protein_id AT5G45105.2p  transcript_id AT5G45105.2  
At5g45105	chr5:018224359	0.0	C/18224359-18224946,18224082-18224231,18223514-18223666	AT5G45105.1  CDS  gene_syn ZINC TRANSPORTER 8 PRECURSOR, ZIP8  gene ZIP8  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|ISS  go_process cation transport|GO:0006812||ISS  go_function cation transmembrane transporter activity|GO:0008324|11500563|ISS  go_function cation transmembrane transporter activity|GO:0008324||ISS  product ZIP8 (ZINC TRANSPORTER 8 PRECURSOR); cation transmembrane transporter  note ZINC TRANSPORTER 8 PRECURSOR (ZIP8); FUNCTIONS IN: cation transmembrane transporter activity; INVOLVED IN: cation transport; LOCATED IN: endomembrane system, integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal and plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: IRT1 (iron-regulated transporter 1); cadmium ion transmembrane transporter/ copper uptake transmembrane transporter/ iron ion transmembrane transporter/ manganese ion transmembrane transporter/ zinc ion transmembrane transporter (TAIR:AT4G19690.2); Has 965 Blast hits to 824 proteins in 144 species: Archae - 0; Bacteria - 27; Metazoa - 100; Fungi - 413; Plants - 319; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).  protein_id AT5G45105.1p  transcript_id AT5G45105.1  protein_id AT5G45105.1p  transcript_id AT5G45105.1  
At5g45110	chr5:018229319	0.0	W/18229319-18229852,18229941-18230691,18230766-18230966,18231060-18231334	AT5G45110.1  CDS  gene_syn K17O22.11, K17O22_11, NPR1-LIKE PROTEIN 3, NPR3  gene NPR3  function Encodes a paralog of NPR1. Involved in negative regulation of defense responses against bacterial and oomycete pathogens. npr3 mutants has elevated level of PR1 expression. Interacts with TGA2, TGA3, TGA5 and TGA6 in yeast two hybrid assays.  go_component chloroplast|GO:0009507||IEA  go_function protein binding|GO:0005515||IEA  go_process defense response to bacterium, incompatible interaction|GO:0009816|17076807|IMP  go_process defense response to fungus, incompatible interaction|GO:0009817|17076807|IMP  go_function protein binding|GO:0005515||ISS  product NPR3 (NPR1-LIKE PROTEIN 3); protein binding  note NPR1-LIKE PROTEIN 3 (NPR3); FUNCTIONS IN: protein binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response to bacterium, incompatible interaction; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: NPR4 (NPR1-like protein 4); protein binding (TAIR:AT4G19660.1); Has 2047 Blast hits to 1721 proteins in 148 species: Archae - 0; Bacteria - 77; Metazoa - 495; Fungi - 36; Plants - 554; Viruses - 9; Other Eukaryotes - 876 (source: NCBI BLink).  protein_id AT5G45110.1p  transcript_id AT5G45110.1  protein_id AT5G45110.1p  transcript_id AT5G45110.1  
At5g45113	chr5:018232277	0.0	C/18232277-18233521	AT5G45113.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial transcription termination factor-related / mTERF-related  note mitochondrial transcription termination factor-related / mTERF-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19650.1); Has 45 Blast hits to 42 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G45113.1p  transcript_id AT5G45113.1  protein_id AT5G45113.1p  transcript_id AT5G45113.1  
At5g45116	chr5:018233906	0.0	W/18233906-18237928	AT5G45116.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 6.2e-227 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At5g45120	chr5:018241003	0.0	W/18241003-18242478	AT5G45120.1  CDS  gene_syn K17O22.14, K17O22_14  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT4G16563.1); Has 1439 Blast hits to 1427 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 160; Fungi - 154; Plants - 1087; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT5G45120.1p  transcript_id AT5G45120.1  protein_id AT5G45120.1p  transcript_id AT5G45120.1  
At5g45130	chr5:018244495	0.0	W/18244495-18244533,18244850-18244927,18245024-18245191,18245323-18245371,18245479-18245552,18245768-18245861,18245960-18246060	AT5G45130.1  CDS  gene_syn ARABIDOPSIS RAB HOMOLOG F2A, ATRAB-F2A, ATRAB5A, ATRABF2A, K17O22.15, K17O22_15, RAB HOMOLOG 1, RAB HOMOLOG F2A, RAB-F2A, RAB5A, RABF2A, RHA1, ROOT HANDEDNESS 1  gene RHA1  function small GTP binding protein  go_component endomembrane system|GO:0012505||IEA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525|1844882|ISS  product RHA1 (RAB HOMOLOG 1); GTP binding  note RAB HOMOLOG 1 (RHA1); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab5-related (InterPro:IPR015599); BEST Arabidopsis thaliana protein match is: ARA7; GTP binding (TAIR:AT4G19640.1); Has 21060 Blast hits to 21035 proteins in 587 species: Archae - 19; Bacteria - 103; Metazoa - 11701; Fungi - 2505; Plants - 1857; Viruses - 19; Other Eukaryotes - 4856 (source: NCBI BLink).  protein_id AT5G45130.1p  transcript_id AT5G45130.1  protein_id AT5G45130.1p  transcript_id AT5G45130.1  
At5g45140	chr5:018257688	0.0	C/18257688-18257713,18257499-18257595,18257211-18257332,18256909-18257001,18256645-18256717,18256472-18256562,18256344-18256396,18255986-18256050,18255693-18255798,18255496-18255606,18254765-18254824,18254335-18254370,18254124-18254174,18253955-18254053,18253562-18253621,18253366-18253458,18252831-18252941,18252640-18252750,18252421-18252537,18252229-18252345,18252069-18252149,18251627-18251731,18251456-18251536,18251197-18251361,18251066-18251110,18250830-18250907,18250623-18250762,18250434-18250524,18249789-18249907,18249566-18249701,18249342-18249472,18248848-18248973,18248700-18248755,18248390-18248460,18248155-18248239,18247877-18247980,18247654-18247782,18247416-18247466	AT5G45140.1  CDS  gene_syn K18C1.1, K18C1_1, NRPC2, NUCLEAR RNA POLYMERASE C2  gene NRPC2  function Encodes a subunit of RNA polymerase III (aka RNA polymerase C).  go_process transcription|GO:0006350||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_function ribonucleoside binding|GO:0032549||IEA  go_component cellular_component|GO:0005575||ND  go_process transcription|GO:0006350||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product NRPC2; DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding  note NRPC2; FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding; INVOLVED IN: transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, subunit 2, domain 6 (InterPro:IPR007120), RNA polymerase Rpb2, domain 7 (InterPro:IPR007641), RNA polymerase, beta subunit, protrusion (InterPro:IPR007644), DNA-directed RNA polymerase, subunit 2 (InterPro:IPR015712), RNA polymerase Rpb2, domain 3 (InterPro:IPR007645), RNA polymerase Rpb2, domain 2 (InterPro:IPR007642), RNA polymerase Rpb2, domain 4 (InterPro:IPR007646), RNA polymerase, beta subunit, conserved site (InterPro:IPR007121), RNA polymerase Rpb2, domain 5 (InterPro:IPR007647); BEST Arabidopsis thaliana protein match is: NRPB2; DNA binding / DNA-directed RNA polymerase (TAIR:AT4G21710.1); Has 22476 Blast hits to 18491 proteins in 5783 species: Archae - 270; Bacteria - 8582; Metazoa - 396; Fungi - 4895; Plants - 1680; Viruses - 211; Other Eukaryotes - 6442 (source: NCBI BLink).  protein_id AT5G45140.1p  transcript_id AT5G45140.1  protein_id AT5G45140.1p  transcript_id AT5G45140.1  
At5g45150	chr5:018260441	0.0	W/18260441-18260737,18260824-18260976,18261072-18261229,18261356-18261727,18262021-18262573,18262657-18262800,18262888-18263780,18264043-18264346	AT5G45150.1  CDS  gene_syn K18C1.3, K18C1_3, RNase three-like protein 3, RTL3  gene RTL3  go_component intracellular|GO:0005622||IEA  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_function double-stranded RNA binding|GO:0003725||IEA  go_function ribonuclease III activity|GO:0004525||IEA  go_function double-stranded RNA binding|GO:0003725||ISS  go_function ribonuclease III activity|GO:0004525||ISS  product RTL3 (RNase three-like protein 3); RNA binding / double-stranded RNA binding / ribonuclease III  note RNase three-like protein 3 (RTL3); FUNCTIONS IN: double-stranded RNA binding, RNA binding, ribonuclease III activity; INVOLVED IN: RNA processing; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Double-stranded RNA binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720), Ribonuclease III (InterPro:IPR000999); BEST Arabidopsis thaliana protein match is: RTL2 (RNASE THREE-LIKE PROTEIN 2); double-stranded RNA binding / ribonuclease III (TAIR:AT3G20420.1); Has 4250 Blast hits to 3297 proteins in 1021 species: Archae - 0; Bacteria - 2282; Metazoa - 446; Fungi - 148; Plants - 219; Viruses - 14; Other Eukaryotes - 1141 (source: NCBI BLink).  protein_id AT5G45150.1p  transcript_id AT5G45150.1  protein_id AT5G45150.1p  transcript_id AT5G45150.1  
At5g45160	chr5:018264991	0.0	W/18264991-18265144,18265361-18265427,18265541-18265643,18265855-18265925,18266207-18266270,18266361-18266426,18266501-18266548,18266638-18266700,18266843-18266899,18266990-18267148,18267232-18267300,18267387-18267478,18267563-18267641,18267755-18267920,18268054-18268178,18268263-18268525,18268610-18268706,18268777-18268947,18269177-18269281,18269365-18269459,18269562-18269658,18269742-18270035	AT5G45160.1  CDS  gene_syn K18C1.4, K18C1_4  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_function GTP binding|GO:0005525||ISS  product root hair defective 3 GTP-binding (RHD3) family protein  note root hair defective 3 GTP-binding (RHD3) family protein; FUNCTIONS IN: GTP binding; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Root hair defective 3 GTP-binding (InterPro:IPR008803); BEST Arabidopsis thaliana protein match is: RHD3 (ROOT HAIR DEFECTIVE 3); GTP binding (TAIR:AT3G13870.1); Has 315 Blast hits to 313 proteins in 126 species: Archae - 0; Bacteria - 2; Metazoa - 52; Fungi - 100; Plants - 57; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT5G45160.1p  transcript_id AT5G45160.1  protein_id AT5G45160.1p  transcript_id AT5G45160.1  
At5g45170	chr5:018272870	0.0	C/18272870-18273129,18272704-18272750,18272548-18272611,18272115-18272163,18271940-18272008,18271769-18271830,18271583-18271663,18271209-18271363,18271024-18271108,18270788-18270931,18270555-18270657	AT5G45170.1  CDS  gene_syn K18C1.5, K18C1_5  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product CbbY protein-related  note CbbY protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: haloacid dehalogenase-like hydrolase family protein (TAIR:AT3G48420.1); Has 242 Blast hits to 240 proteins in 77 species: Archae - 0; Bacteria - 124; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT5G45170.1p  transcript_id AT5G45170.1  protein_id AT5G45170.1p  transcript_id AT5G45170.1  
At5g45180	chr5:018276137	0.0	C/18276137-18276568,18275628-18275868,18275446-18275510,18274880-18275229,18274179-18274452	AT5G45180.1  CDS  gene_syn K18C1.6, K18C1_6  go_function flavin-containing monooxygenase activity|GO:0004499||IEA  go_function FAD binding|GO:0050660||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_function monooxygenase activity|GO:0004497||ISS  product flavin-containing monooxygenase family protein / FMO family protein  note flavin-containing monooxygenase family protein / FMO family protein; FUNCTIONS IN: NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960); BEST Arabidopsis thaliana protein match is: FMO1 (FLAVIN-DEPENDENT MONOOXYGENASE 1); FAD binding / NADP or NADPH binding / electron carrier/ flavin-containing monooxygenase/ monooxygenase/ oxidoreductase (TAIR:AT1G19250.1); Has 5076 Blast hits to 4999 proteins in 540 species: Archae - 0; Bacteria - 1957; Metazoa - 645; Fungi - 782; Plants - 410; Viruses - 0; Other Eukaryotes - 1282 (source: NCBI BLink).  protein_id AT5G45180.1p  transcript_id AT5G45180.1  protein_id AT5G45180.1p  transcript_id AT5G45180.1  
At5g45190	chr5:018280507	0.0	C/18280507-18280733,18279997-18280078,18279522-18279656,18279120-18279295,18278879-18279030,18277808-18278775	AT5G45190.1  CDS  gene_syn CYCT1;5, K18C1.7, K18C1_7  function Encodes a cyclin T partner CYCT1;5. Plays important roles in infection with Cauliflower mosaic virus (CaMV).  go_process response to virus|GO:0009615|17468259|IEP  go_process flower development|GO:0009908|17468259|IMP  go_process trichome morphogenesis|GO:0010090|17468259|IMP  go_process leaf development|GO:0048366|17468259|IGI  go_process regulation of viral reproduction|GO:0050792|17468259|IMP  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase activity|GO:0004693||ISS  product cyclin family protein  note cyclin family protein; FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: in 6 processes; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCT1;4; cyclin-dependent protein kinase (TAIR:AT4G19600.1); Has 3933 Blast hits to 3454 proteins in 269 species: Archae - 5; Bacteria - 85; Metazoa - 1868; Fungi - 462; Plants - 303; Viruses - 13; Other Eukaryotes - 1197 (source: NCBI BLink).  protein_id AT5G45190.1p  transcript_id AT5G45190.1  protein_id AT5G45190.1p  transcript_id AT5G45190.1  
At5g45190	chr5:018280509	0.0	C/18280509-18280733,18280420-18280443,18280300-18280317,18279997-18280071,18279522-18279656,18279120-18279295,18278879-18279030,18277808-18278775	AT5G45190.2  CDS  gene_syn CYCT1;5, K18C1.7, K18C1_7  function Encodes a cyclin T partner CYCT1;5. Plays important roles in infection with Cauliflower mosaic virus (CaMV).  go_process response to virus|GO:0009615|17468259|IEP  go_process flower development|GO:0009908|17468259|IMP  go_process trichome morphogenesis|GO:0010090|17468259|IMP  go_process leaf development|GO:0048366|17468259|IGI  go_process regulation of viral reproduction|GO:0050792|17468259|IMP  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase activity|GO:0004693||ISS  product cyclin family protein  note cyclin family protein; FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: in 6 processes; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like (InterPro:IPR011028), Transcription regulator cyclin (InterPro:IPR015429), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCT1;4; cyclin-dependent protein kinase (TAIR:AT4G19600.1).  protein_id AT5G45190.2p  transcript_id AT5G45190.2  protein_id AT5G45190.2p  transcript_id AT5G45190.2  
At5g45200	chr5:018289848	0.0	C/18289848-18290332,18286358-18287534,18285914-18286228,18284862-18285839,18283967-18284797	AT5G45200.1  CDS  gene_syn K18C1.8, K18C1_8  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, protein binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat 3 (InterPro:IPR011713), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G36150.1); Has 20680 Blast hits to 13518 proteins in 572 species: Archae - 16; Bacteria - 1434; Metazoa - 4026; Fungi - 218; Plants - 14035; Viruses - 0; Other Eukaryotes - 951 (source: NCBI BLink).  protein_id AT5G45200.1p  transcript_id AT5G45200.1  protein_id AT5G45200.1p  transcript_id AT5G45200.1  
At5g45210	chr5:018295521	0.0	W/18295521-18295966,18296634-18297687,18297761-18298057,18298138-18298434	AT5G45210.1  CDS  gene_syn K18C1.9, K18C1_9  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: protein binding, transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: ATP binding / protein binding / transmembrane receptor (TAIR:AT3G51560.1); Has 7449 Blast hits to 7123 proteins in 239 species: Archae - 2; Bacteria - 116; Metazoa - 10; Fungi - 1; Plants - 7217; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).  protein_id AT5G45210.1p  transcript_id AT5G45210.1  protein_id AT5G45210.1p  transcript_id AT5G45210.1  
At5g45220	chr5:018300606	0.0	C/18300606-18301069,18300219-18300500,18299933-18300130,18299538-18299844,18299251-18299429,18298926-18299136	AT5G45220.1  CDS  gene_syn K18C1.10, K18C1_10  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_process defense response|GO:0006952||ISS  go_function transmembrane receptor activity|GO:0004888||ISS  product Toll-Interleukin-Resistance (TIR) domain-containing protein  note Toll-Interleukin-Resistance (TIR) domain-containing protein; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G45060.1); Has 1626 Blast hits to 814 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1626; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G45220.1p  transcript_id AT5G45220.1  protein_id AT5G45220.1p  transcript_id AT5G45220.1  
At5g45230	chr5:018307810	0.0	C/18307810-18308303,18304572-18305709,18304156-18304488,18303178-18304074,18302440-18303089,18302147-18302330	AT5G45230.1  CDS  gene_syn K18C1.11, K18C1_11  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, protein binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G36150.1); Has 20493 Blast hits to 13785 proteins in 553 species: Archae - 16; Bacteria - 1190; Metazoa - 3427; Fungi - 237; Plants - 14749; Viruses - 6; Other Eukaryotes - 868 (source: NCBI BLink).  protein_id AT5G45230.1p  transcript_id AT5G45230.1  protein_id AT5G45230.1p  transcript_id AT5G45230.1  
At5g45240	chr5:018313706	0.0	W/18313706-18314103,18315290-18316043,18316151-18316408,18316663-18316866,18317594-18317629,18317865-18318003,18318104-18318208,18318302-18318517,18318645-18318746,18318863-18319089	AT5G45240.1  CDS  gene_syn K18C1.12, K18C1_12  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_process defense response|GO:0006952||ISS  product transmembrane receptor  note transmembrane receptor; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: NACHT nucleoside triphosphatase (InterPro:IPR007111), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: ATP binding / protein binding / transmembrane receptor (TAIR:AT3G51560.1); Has 8750 Blast hits to 7089 proteins in 282 species: Archae - 4; Bacteria - 234; Metazoa - 335; Fungi - 8; Plants - 7958; Viruses - 0; Other Eukaryotes - 211 (source: NCBI BLink).  protein_id AT5G45240.1p  transcript_id AT5G45240.1  protein_id AT5G45240.1p  transcript_id AT5G45240.1  
At5g45250	chr5:018325550	0.0	C/18325550-18326022,18324220-18325402,18323819-18324133,18322828-18323712,18321914-18322711	AT5G45250.1  CDS  gene_syn DISEASE RESISTANCE PROTEIN RPS4, K9E15.1, K9E15_1, RESISTANT TO P. SYRINGAE 4, RPS4  gene RPS4  function RPS4 belongs to the Toll/interleukin-1 receptor (TIR)-nucleotide binding site (NBS)-Leu-rich repeat (LRR) class of disease resistance (R ) genes. Confers specific resistance to Pseudomonas syringae pv. tomato carrying the avirulence gene AvrRPS4. Produces alternative transcripts with truncated open reading frames.  go_component nucleus|GO:0005634|17997306|IDA  go_component endomembrane system|GO:0012505|17997306|IDA  go_component membrane|GO:0016020|10571887|ISS  go_process defense response|GO:0006952|10571887|TAS  go_process defense response|GO:0006952|9395402|TAS  go_process defense response|GO:0006952||ISS  go_process plant-type hypersensitive response|GO:0009626|17997306|IMP  go_process defense response signaling pathway, resistance gene-dependent|GO:0009870|19132868|IDA  go_process defense response to bacterium|GO:0042742|8589423|IDA  go_function receptor activity|GO:0004872|10571887|ISS  product RPS4 (RESISTANT TO P. SYRINGAE 4); receptor  note RESISTANT TO P. SYRINGAE 4 (RPS4); FUNCTIONS IN: receptor activity; INVOLVED IN: defense response signaling pathway, resistance gene-dependent, defense response to bacterium, plant-type hypersensitive response, defense response; LOCATED IN: endomembrane system, nucleus, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G45060.1); Has 15520 Blast hits to 11873 proteins in 435 species: Archae - 12; Bacteria - 769; Metazoa - 1485; Fungi - 72; Plants - 12683; Viruses - 0; Other Eukaryotes - 499 (source: NCBI BLink).  protein_id AT5G45250.1p  transcript_id AT5G45250.1  protein_id AT5G45250.1p  transcript_id AT5G45250.1  
At5g45260	chr5:018326277	0.0	W/18326277-18326653,18326763-18327873,18327954-18328253,18328347-18329264,18329453-18330306,18331395-18331517,18332046-18332229	AT5G45260.1  CDS  gene_syn ARABIDOPSIS THALIANA WRKY DOMAIN PROTEIN 52, ATWRKY52, K9E15.2, K9E15_2, RESISTANT TO RALSTONIA SOLANACEARUM 1, RRS1, SENSITIVE TO LOW HUMIDITY 1, SLH1  gene RRS1  function Confers resistance to Ralstonia solanacearum. Similar to NBLS-TIR resistance genes,and also contains similarity to transcription factors. Interacts with pathogen effector protein AvrPop2.  go_component nucleus|GO:0005634|14729210|TAS  go_process defense response|GO:0006952||ISS  go_process cell death|GO:0008219|16146526|IMP  go_process defense response to bacterium, incompatible interaction|GO:0009816|14729210|TAS  go_process defense response to bacterium, incompatible interaction|GO:0009816|16146526|IMP  go_function DNA binding|GO:0003677|16146526|IDA  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product RRS1 (RESISTANT TO RALSTONIA SOLANACEARUM 1); DNA binding / transcription factor  note RESISTANT TO RALSTONIA SOLANACEARUM 1 (RRS1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: defense response to bacterium, incompatible interaction, cell death, defense response; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: TTR1; protein binding / transcription factor (TAIR:AT5G45050.1); Has 13998 Blast hits to 11098 proteins in 471 species: Archae - 0; Bacteria - 1197; Metazoa - 283; Fungi - 34; Plants - 12163; Viruses - 4; Other Eukaryotes - 317 (source: NCBI BLink).  protein_id AT5G45260.1p  transcript_id AT5G45260.1  protein_id AT5G45260.1p  transcript_id AT5G45260.1  
At5g45260	chr5:018326277	0.0	W/18326277-18326653,18326763-18327873,18327954-18328253,18328347-18329264,18329453-18330310	AT5G45260.2  CDS  gene_syn ARABIDOPSIS THALIANA WRKY DOMAIN PROTEIN 52, ATWRKY52, K9E15.2, K9E15_2, RESISTANT TO RALSTONIA SOLANACEARUM 1, RRS1, SENSITIVE TO LOW HUMIDITY 1, SLH1  gene RRS1  function Confers resistance to Ralstonia solanacearum. Similar to NBLS-TIR resistance genes,and also contains similarity to transcription factors. Interacts with pathogen effector protein AvrPop2.  go_component nucleus|GO:0005634|14729210|TAS  go_process defense response|GO:0006952||ISS  go_process cell death|GO:0008219|16146526|IMP  go_process defense response to bacterium, incompatible interaction|GO:0009816|14729210|TAS  go_process defense response to bacterium, incompatible interaction|GO:0009816|16146526|IMP  go_function DNA binding|GO:0003677|16146526|IDA  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product RRS1 (RESISTANT TO RALSTONIA SOLANACEARUM 1); DNA binding / transcription factor  note RESISTANT TO RALSTONIA SOLANACEARUM 1 (RRS1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: defense response to bacterium, incompatible interaction, cell death, defense response; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat 3 (InterPro:IPR011713), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: TTR1; protein binding / transcription factor (TAIR:AT5G45050.1); Has 12093 Blast hits to 9487 proteins in 411 species: Archae - 0; Bacteria - 1199; Metazoa - 276; Fungi - 34; Plants - 10275; Viruses - 4; Other Eukaryotes - 305 (source: NCBI BLink).  protein_id AT5G45260.2p  transcript_id AT5G45260.2  protein_id AT5G45260.2p  transcript_id AT5G45260.2  
At5g45275	chr5:018336932	0.0	C/18336932-18337240,18335031-18335965,18334476-18334944	AT5G45275.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nodulin-related (TAIR:AT4G19450.1); Has 697 Blast hits to 659 proteins in 149 species: Archae - 19; Bacteria - 126; Metazoa - 5; Fungi - 146; Plants - 324; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT5G45275.1p  transcript_id AT5G45275.1  protein_id AT5G45275.1p  transcript_id AT5G45275.1  
At5g45276	chr5:018338754	0.0	C/18338754-18340436	AT5G45276.1  pseudogenic_transcript  pseudo  function unknown pseudogene  
At5g45280	chr5:018346862	0.0	W/18346862-18346973,18347347-18347429,18347538-18347667,18347766-18347845,18347985-18348071,18348165-18348289,18348381-18348441,18348529-18348582,18348674-18348751,18348843-18348948,18349032-18349177,18349375-18349488	AT5G45280.2  CDS  gene_syn K9E15.6, K9E15_6  go_component cell wall|GO:0005618|15593128|IDA  go_process biological_process|GO:0008150||ND  go_function carboxylesterase activity|GO:0004091||ISS  product pectinacetylesterase, putative  note pectinacetylesterase, putative; FUNCTIONS IN: carboxylesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinacetylesterase (InterPro:IPR004963); BEST Arabidopsis thaliana protein match is: pectinacetylesterase, putative (TAIR:AT4G19410.1); Has 409 Blast hits to 405 proteins in 79 species: Archae - 2; Bacteria - 34; Metazoa - 114; Fungi - 0; Plants - 158; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT5G45280.2p  transcript_id AT5G45280.2  protein_id AT5G45280.2p  transcript_id AT5G45280.2  
At5g45280	chr5:018346862	0.0	W/18346862-18346973,18347347-18347429,18347538-18347667,18347766-18347845,18347985-18348071,18348165-18348289,18348381-18348441,18348529-18348582,18348674-18348751,18348843-18348948,18349039-18349177,18349375-18349432	AT5G45280.1  CDS  gene_syn K9E15.6, K9E15_6  go_component cell wall|GO:0005618|15593128|IDA  go_process biological_process|GO:0008150||ND  go_function carboxylesterase activity|GO:0004091||ISS  product pectinacetylesterase, putative  note pectinacetylesterase, putative; FUNCTIONS IN: carboxylesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinacetylesterase (InterPro:IPR004963); BEST Arabidopsis thaliana protein match is: pectinacetylesterase, putative (TAIR:AT4G19410.1); Has 400 Blast hits to 396 proteins in 78 species: Archae - 2; Bacteria - 34; Metazoa - 110; Fungi - 0; Plants - 155; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).  protein_id AT5G45280.1p  transcript_id AT5G45280.1  protein_id AT5G45280.1p  transcript_id AT5G45280.1  
At5g45290	chr5:018351892	0.0	C/18351892-18352092,18350909-18351817,18350621-18350827,18350379-18350527,18350170-18350280,18350011-18350071	AT5G45290.1  CDS  gene_syn K9E15.7, K9E15_7  go_component chloroplast|GO:0009507||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G19950.1); Has 6103 Blast hits to 6057 proteins in 195 species: Archae - 0; Bacteria - 6; Metazoa - 2043; Fungi - 441; Plants - 2609; Viruses - 4; Other Eukaryotes - 1000 (source: NCBI BLink).  protein_id AT5G45290.1p  transcript_id AT5G45290.1  protein_id AT5G45290.1p  transcript_id AT5G45290.1  
At5g45290	chr5:018351892	0.0	C/18351892-18352092,18350909-18351817,18350621-18350827,18350379-18350527,18350170-18350280,18350011-18350074	AT5G45290.2  CDS  gene_syn K9E15.7, K9E15_7  go_component chloroplast|GO:0009507||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G11680.1); Has 6002 Blast hits to 5985 proteins in 195 species: Archae - 0; Bacteria - 6; Metazoa - 1992; Fungi - 419; Plants - 2624; Viruses - 6; Other Eukaryotes - 955 (source: NCBI BLink).  protein_id AT5G45290.2p  transcript_id AT5G45290.2  protein_id AT5G45290.2p  transcript_id AT5G45290.2  
At5g45300	chr5:018353636	0.0	W/18353636-18354112,18354286-18354513,18354598-18354678,18354822-18355025,18355149-18355343,18355465-18355629,18355719-18355979,18356061-18356273,18356362-18356581,18356671-18356696	AT5G45300.1  CDS  gene_syn BAM8, BETA-AMYLASE 2, BETA-AMYLASE 8, BMY2, K9E15.8, K9E15_8  gene BMY2  go_process polysaccharide catabolic process|GO:0000272||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process cellulose biosynthetic process|GO:0030244||IEA  go_function catalytic activity|GO:0003824||IEA  go_function beta-amylase activity|GO:0016161||IEA  go_function cation binding|GO:0043169||IEA  go_component cellular_component|GO:0005575||ND  go_function beta-amylase activity|GO:0016161||ISS  product BMY2 (BETA-AMYLASE 2); beta-amylase/ catalytic/ cation binding  note BETA-AMYLASE 2 (BMY2); FUNCTIONS IN: cation binding, beta-amylase activity, catalytic activity; INVOLVED IN: cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), BZR1, transcriptional repressor (InterPro:IPR008540); BEST Arabidopsis thaliana protein match is: BAM7 (BETA-AMYLASE 7); beta-amylase/ catalytic/ cation binding (TAIR:AT2G45880.1); Has 843 Blast hits to 824 proteins in 149 species: Archae - 0; Bacteria - 74; Metazoa - 196; Fungi - 10; Plants - 492; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT5G45300.1p  transcript_id AT5G45300.1  protein_id AT5G45300.1p  transcript_id AT5G45300.1  
At5g45300	chr5:018353636	0.0	W/18353636-18354112,18354292-18354513,18354598-18354678,18354822-18355025,18355149-18355343,18355465-18355629,18355719-18355979,18356061-18356273,18356362-18356581,18356671-18356696	AT5G45300.2  CDS  gene_syn BAM8, BETA-AMYLASE 2, BETA-AMYLASE 8, BMY2, K9E15.8, K9E15_8  gene BMY2  go_process polysaccharide catabolic process|GO:0000272||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function beta-amylase activity|GO:0016161||IEA  go_function cation binding|GO:0043169||IEA  go_component cellular_component|GO:0005575||ND  go_function beta-amylase activity|GO:0016161||ISS  product BMY2 (BETA-AMYLASE 2); beta-amylase/ catalytic/ cation binding  note BETA-AMYLASE 2 (BMY2); FUNCTIONS IN: cation binding, beta-amylase activity, catalytic activity; INVOLVED IN: carbohydrate metabolic process, polysaccharide catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), BZR1, transcriptional repressor (InterPro:IPR008540); BEST Arabidopsis thaliana protein match is: BAM7 (BETA-AMYLASE 7); beta-amylase/ catalytic/ cation binding (TAIR:AT2G45880.1); Has 865 Blast hits to 846 proteins in 154 species: Archae - 0; Bacteria - 74; Metazoa - 213; Fungi - 10; Plants - 492; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT5G45300.2p  transcript_id AT5G45300.2  protein_id AT5G45300.2p  transcript_id AT5G45300.2  
At5g45307	chr5:018358805	0.0	C/18358805-18358893	AT5G45307.1  miRNA  gene_syn MICRORNA 168, MICRORNA 168B, MIR168, MIR168B  gene MIR168B  function Encodes a microRNA that targets AGO1. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCGCUUGGUGCAGGUCGGGAA  go_component cellular_component|GO:0005575||ND  go_process gene silencing by miRNA|GO:0035195|15200956|TAS  go_function molecular_function|GO:0003674||ND  product MIR168B (MICRORNA 168B); miRNA  transcript_id AT5G45307.1  
At5g45310	chr5:018360533	0.0	C/18360533-18360796,18360061-18360240,18359373-18359987	AT5G45310.1  CDS  gene_syn K9E15.9, K9E15_9  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: stem, inflorescence meristem, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; Has 299 Blast hits to 237 proteins in 86 species: Archae - 11; Bacteria - 50; Metazoa - 71; Fungi - 15; Plants - 14; Viruses - 52; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT5G45310.1p  transcript_id AT5G45310.1  protein_id AT5G45310.1p  transcript_id AT5G45310.1  
At5g45320	chr5:018362875	0.0	C/18362875-18363053,18362354-18362771	AT5G45320.1  CDS  gene_syn K9E15.10, K9E15_10  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 162 Blast hits to 162 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 162; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G45320.1p  transcript_id AT5G45320.1  protein_id AT5G45320.1p  transcript_id AT5G45320.1  
At5g45330	chr5:018366346	0.0	C/18366346-18366544,18365812-18365912,18365640-18365711,18364663-18365541,18364232-18364399,18363990-18364106,18363701-18363880	AT5G45330.1  CDS  gene_syn K9E15.11, K9E15_11  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26110.1); Has 2070 Blast hits to 1075 proteins in 177 species: Archae - 0; Bacteria - 25; Metazoa - 569; Fungi - 360; Plants - 129; Viruses - 13; Other Eukaryotes - 974 (source: NCBI BLink).  protein_id AT5G45330.1p  transcript_id AT5G45330.1  protein_id AT5G45330.1p  transcript_id AT5G45330.1  
At5g45340	chr5:018370710	0.0	C/18370710-18370909,18370285-18370603,18369733-18370119,18369478-18369643,18369121-18369389	AT5G45340.2  CDS  gene_syn CYP707A3, CYTOCHROME P450, FAMILY 707, SUBFAMILY A, POLYPEPTIDE 3, K9E15.12, K9E15_12  gene CYP707A3  function Encodes a protein with ABA 8 -hydroxylase activity; involved in ABA catabolism. Mutant analyses show that disruption in the gene results in more drought tolerance whereas overexpression results in increased transpiration rate and reduced drought tolerance. Gene involved in postgermination growth. Plant P450 CYP707A3, ABA 8 -hydroxylase, binds enantioselectively (+)-ABA but not (-)-ABA, whereas the enzyme binds both enantiomers of AHI1 (a structural ABA analogue used as ABA 8 -hydroxylase competitive inhibitor).  go_component endomembrane system|GO:0012505||IEA  go_process response to desiccation|GO:0009269|15064374|IEP  go_process response to water deprivation|GO:0009414|16623881|IMP  go_process response to red or far red light|GO:0009639|17010113|IEP  go_process response to abscisic acid stimulus|GO:0009737|15064374|IEP  go_process response to gibberellin stimulus|GO:0009739|15064374|IEP  go_process response to brassinosteroid stimulus|GO:0009741|15064374|IEP  go_process drought recovery|GO:0009819|15044947|IEP  go_process abscisic acid catabolic process|GO:0046345|16623881|TAS  go_function (+)-abscisic acid 8 -hydroxylase activity|GO:0010295|15064374|IDA  go_function oxygen binding|GO:0019825||ISS  product CYP707A3; (+)-abscisic acid 8 -hydroxylase/ oxygen binding  note CYP707A3; FUNCTIONS IN: oxygen binding, (+)-abscisic acid 8 -hydroxylase activity; INVOLVED IN: in 8 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP707A1; (+)-abscisic acid 8 -hydroxylase/ oxygen binding (TAIR:AT4G19230.2); Has 25536 Blast hits to 25452 proteins in 1354 species: Archae - 51; Bacteria - 4732; Metazoa - 9967; Fungi - 3932; Plants - 4958; Viruses - 6; Other Eukaryotes - 1890 (source: NCBI BLink).  protein_id AT5G45340.2p  transcript_id AT5G45340.2  protein_id AT5G45340.2p  transcript_id AT5G45340.2  
At5g45340	chr5:018370710	0.0	C/18370710-18370909,18370285-18370603,18369733-18370119,18369478-18369643,18369164-18369389,18368977-18369070	AT5G45340.1  CDS  gene_syn CYP707A3, CYTOCHROME P450, FAMILY 707, SUBFAMILY A, POLYPEPTIDE 3, K9E15.12, K9E15_12  gene CYP707A3  function Encodes a protein with ABA 8 -hydroxylase activity; involved in ABA catabolism. Mutant analyses show that disruption in the gene results in more drought tolerance whereas overexpression results in increased transpiration rate and reduced drought tolerance. Gene involved in postgermination growth. Plant P450 CYP707A3, ABA 8 -hydroxylase, binds enantioselectively (+)-ABA but not (-)-ABA, whereas the enzyme binds both enantiomers of AHI1 (a structural ABA analogue used as ABA 8 -hydroxylase competitive inhibitor).  go_component endomembrane system|GO:0012505||IEA  go_process response to desiccation|GO:0009269|15064374|IEP  go_process response to water deprivation|GO:0009414|16623881|IMP  go_process response to red or far red light|GO:0009639|17010113|IEP  go_process response to abscisic acid stimulus|GO:0009737|15064374|IEP  go_process response to gibberellin stimulus|GO:0009739|15064374|IEP  go_process response to brassinosteroid stimulus|GO:0009741|15064374|IEP  go_process drought recovery|GO:0009819|15044947|IEP  go_process abscisic acid catabolic process|GO:0046345|16623881|TAS  go_function (+)-abscisic acid 8 -hydroxylase activity|GO:0010295|15064374|IDA  go_function oxygen binding|GO:0019825||ISS  product CYP707A3; (+)-abscisic acid 8 -hydroxylase/ oxygen binding  note CYP707A3; FUNCTIONS IN: oxygen binding, (+)-abscisic acid 8 -hydroxylase activity; INVOLVED IN: in 8 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973); BEST Arabidopsis thaliana protein match is: CYP707A1; (+)-abscisic acid 8 -hydroxylase/ oxygen binding (TAIR:AT4G19230.1); Has 25663 Blast hits to 25579 proteins in 1354 species: Archae - 51; Bacteria - 4740; Metazoa - 9985; Fungi - 4000; Plants - 4997; Viruses - 6; Other Eukaryotes - 1884 (source: NCBI BLink).  protein_id AT5G45340.1p  transcript_id AT5G45340.1  protein_id AT5G45340.1p  transcript_id AT5G45340.1  
At5g45350	chr5:018382560	0.0	C/18382560-18382854,18382100-18382338	AT5G45350.1  CDS  gene_syn MFC19.1, MFC19_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product proline-rich family protein  note proline-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: XYPPX repeat (InterPro:IPR006031); Has 38451 Blast hits to 17302 proteins in 877 species: Archae - 8; Bacteria - 4094; Metazoa - 20908; Fungi - 4045; Plants - 5314; Viruses - 659; Other Eukaryotes - 3423 (source: NCBI BLink).  protein_id AT5G45350.1p  transcript_id AT5G45350.1  protein_id AT5G45350.1p  transcript_id AT5G45350.1  
At5g45350	chr5:018382560	0.0	C/18382560-18382854,18382100-18382338	AT5G45350.2  CDS  gene_syn MFC19.1, MFC19_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product proline-rich family protein  note proline-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: XYPPX repeat (InterPro:IPR006031); Has 38451 Blast hits to 17302 proteins in 877 species: Archae - 8; Bacteria - 4094; Metazoa - 20908; Fungi - 4045; Plants - 5314; Viruses - 659; Other Eukaryotes - 3423 (source: NCBI BLink).  protein_id AT5G45350.2p  transcript_id AT5G45350.2  protein_id AT5G45350.2p  transcript_id AT5G45350.2  
At5g45360	chr5:018386608	0.0	C/18386608-18386670,18386087-18386290,18385931-18386004,18385742-18385817,18385481-18385591,18385222-18385396,18384962-18385138,18384783-18384853	AT5G45360.1  CDS  gene_syn MFC19.2, MFC19_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); Has 132 Blast hits to 132 proteins in 38 species: Archae - 0; Bacteria - 2; Metazoa - 76; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G45360.1p  transcript_id AT5G45360.1  protein_id AT5G45360.1p  transcript_id AT5G45360.1  
At5g45370	chr5:018388411	0.0	W/18388411-18388625,18388887-18388949,18389036-18389152,18389244-18389359,18389432-18389685,18389859-18390010,18390126-18390282	AT5G45370.1  CDS  gene_syn MFC19.4, MFC19_4  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  product nodulin-related / integral membrane family protein  note nodulin-related / integral membrane family protein; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT4G19185.1); Has 4168 Blast hits to 4157 proteins in 765 species: Archae - 70; Bacteria - 2514; Metazoa - 26; Fungi - 9; Plants - 634; Viruses - 0; Other Eukaryotes - 915 (source: NCBI BLink).  protein_id AT5G45370.1p  transcript_id AT5G45370.1  protein_id AT5G45370.1p  transcript_id AT5G45370.1  
At5g45370	chr5:018388411	0.0	W/18388411-18388625,18388887-18388949,18389036-18389152,18389244-18389685,18389859-18390010,18390126-18390282	AT5G45370.2  CDS  gene_syn MFC19.4, MFC19_4  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  product nodulin-related / integral membrane family protein  note nodulin-related / integral membrane family protein; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT4G19185.1); Has 2376 Blast hits to 2358 proteins in 450 species: Archae - 18; Bacteria - 1303; Metazoa - 17; Fungi - 9; Plants - 636; Viruses - 0; Other Eukaryotes - 393 (source: NCBI BLink).  protein_id AT5G45370.2p  transcript_id AT5G45370.2  protein_id AT5G45370.2p  transcript_id AT5G45370.2  
At5g45370	chr5:018388411	0.0	W/18388411-18388625,18389244-18389685,18389859-18390010,18390126-18390282	AT5G45370.3  CDS  gene_syn MFC19.4, MFC19_4  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  product nodulin-related / integral membrane family protein  note nodulin-related / integral membrane family protein; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT4G19185.1); Has 1320 Blast hits to 1282 proteins in 234 species: Archae - 10; Bacteria - 562; Metazoa - 6; Fungi - 9; Plants - 640; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT5G45370.3p  transcript_id AT5G45370.3  protein_id AT5G45370.3p  transcript_id AT5G45370.3  
At5g45380	chr5:018391337	0.0	W/18391337-18391504,18391882-18391989,18392125-18392220,18392319-18392401,18392755-18392975,18393206-18393468,18393754-18393992,18394417-18394847,18394976-18395179,18395425-18395696	AT5G45380.1  CDS  gene_syn MFC19.5, MFC19_5  go_component plasma membrane|GO:0005886|17672841|IDA  go_process cellular response to nitrogen starvation|GO:0006995|17672841|IEP  go_function urea transmembrane transporter activity|GO:0015204||ISS  go_function solute:sodium symporter activity|GO:0015370||ISS  product sodium:solute symporter family protein  note sodium:solute symporter family protein; FUNCTIONS IN: urea transmembrane transporter activity, solute:sodium symporter activity; INVOLVED IN: cellular response to nitrogen starvation; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Na+/solute symporter (InterPro:IPR001734); Has 6016 Blast hits to 6007 proteins in 931 species: Archae - 110; Bacteria - 3309; Metazoa - 647; Fungi - 230; Plants - 23; Viruses - 0; Other Eukaryotes - 1697 (source: NCBI BLink).  protein_id AT5G45380.1p  transcript_id AT5G45380.1  protein_id AT5G45380.1p  transcript_id AT5G45380.1  
At5g45390	chr5:018396351	0.0	W/18396351-18396745,18397103-18397586	AT5G45390.1  CDS  gene_syn CLP PROTEASE P4, CLPP4, MFC19.6, MFC19_6, NCLPP4, NUCLEAR-ENCODED CLP PROTEASE P4  gene CLPP4  function One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastid stroma|GO:0009532|14593120|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_component chloroplast thylakoid membrane|GO:0009535|11278690|IDA  go_component chloroplast stroma|GO:0009570|11278690|IDA  go_component chloroplastic endopeptidase Clp complex|GO:0009840|11278690|IDA  go_process chloroplast organization|GO:0009658|17241447|IMP  go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|17241447|IMP  product CLPP4 (CLP PROTEASE P4); serine-type endopeptidase  note CLP PROTEASE P4 (CLPP4); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: chloroplast organization, regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: in 7 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLPP3; serine-type endopeptidase (TAIR:AT1G66670.1); Has 9111 Blast hits to 9106 proteins in 1705 species: Archae - 2; Bacteria - 4632; Metazoa - 115; Fungi - 50; Plants - 686; Viruses - 82; Other Eukaryotes - 3544 (source: NCBI BLink).  protein_id AT5G45390.1p  transcript_id AT5G45390.1  protein_id AT5G45390.1p  transcript_id AT5G45390.1  
At5g45400	chr5:018398990	0.0	W/18398990-18399282,18399376-18401644	AT5G45400.1  CDS  gene_syn MFC19.7, MFC19_7  go_component nucleus|GO:0005634||IEA  go_process DNA replication|GO:0006260||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process DNA replication|GO:0006260||ISS  product replication protein, putative  note replication protein, putative; FUNCTIONS IN: DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: DNA replication; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Replication factor-A, C-terminal (InterPro:IPR013955), Replication factor-a protein 1 Rpa1 (InterPro:IPR004591), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Zinc finger, CCHC-type (InterPro:IPR001878), Replication factor-A protein 1, N-terminal (InterPro:IPR007199); BEST Arabidopsis thaliana protein match is: DNA binding / nucleic acid binding / zinc ion binding (TAIR:AT4G19130.1); Has 806 Blast hits to 628 proteins in 176 species: Archae - 20; Bacteria - 8; Metazoa - 291; Fungi - 156; Plants - 197; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).  protein_id AT5G45400.1p  transcript_id AT5G45400.1  protein_id AT5G45400.1p  transcript_id AT5G45400.1  
At5g45410	chr5:018403169	0.0	C/18403169-18403282,18402797-18403075,18402071-18402706	AT5G45410.1  CDS  gene_syn MFC19.8, MFC19_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25030.2); Has 68 Blast hits to 68 proteins in 16 species: Archae - 0; Bacteria - 20; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G45410.1p  transcript_id AT5G45410.1  protein_id AT5G45410.1p  transcript_id AT5G45410.1  
At5g45410	chr5:018403169	0.0	C/18403169-18403282,18402797-18403075,18402071-18402706	AT5G45410.2  CDS  gene_syn MFC19.8, MFC19_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25030.2); Has 68 Blast hits to 68 proteins in 16 species: Archae - 0; Bacteria - 20; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G45410.2p  transcript_id AT5G45410.2  protein_id AT5G45410.2p  transcript_id AT5G45410.2  
At5g45410	chr5:018403169	0.0	C/18403169-18403282,18402797-18403075,18402071-18402706	AT5G45410.3  CDS  gene_syn MFC19.8, MFC19_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25030.2); Has 68 Blast hits to 68 proteins in 16 species: Archae - 0; Bacteria - 20; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G45410.3p  transcript_id AT5G45410.3  protein_id AT5G45410.3p  transcript_id AT5G45410.3  
At5g45420	chr5:018405668	0.0	C/18405668-18406597	AT5G45420.1  CDS  gene_syn MFC19.9, MFC19_9  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function DNA binding|GO:0003677||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Homeodomain-like (InterPro:IPR009057), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein / cell division protein-related (TAIR:AT3G11450.1); Has 321 Blast hits to 281 proteins in 86 species: Archae - 0; Bacteria - 2; Metazoa - 227; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT5G45420.1p  transcript_id AT5G45420.1  protein_id AT5G45420.1p  transcript_id AT5G45420.1  
At5g45428	chr5:018408137	0.0	W/18408137-18408262	AT5G45428.1  CDS  gene_syn CPuORF24, Conserved peptide upstream open reading frame 24  gene CPuORF24  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF24 represents a conserved upstream opening reading frame relative to major ORF AT5G45430.1  product CPuORF24 (Conserved peptide upstream open reading frame 24)  note Conserved peptide upstream open reading frame 24 (CPuORF24); BEST Arabidopsis thaliana protein match is: CPuORF25 (Conserved peptide upstream open reading frame 25) (TAIR:AT4G19112.1); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G45428.1p  transcript_id AT5G45428.1  protein_id AT5G45428.1p  transcript_id AT5G45428.1  
At5g45430	chr5:018409200	0.0	W/18409200-18409207,18409303-18409381,18409464-18409532,18409616-18409705,18409789-18409927,18410074-18410176,18410339-18410391,18410483-18410549,18410648-18410756,18410852-18411422,18411500-18411711	AT5G45430.1  CDS  gene_syn MFC19.10, MFC19_10  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT4G19110.1); Has 91027 Blast hits to 89857 proteins in 2978 species: Archae - 57; Bacteria - 7586; Metazoa - 40470; Fungi - 8320; Plants - 16653; Viruses - 461; Other Eukaryotes - 17480 (source: NCBI BLink).  protein_id AT5G45430.1p  transcript_id AT5G45430.1  protein_id AT5G45430.1p  transcript_id AT5G45430.1  
At5g45440	chr5:018412426	0.0	C/18412426-18413466	AT5G45440.1  CDS  gene_syn MFC19.11, MFC19_11  go_process apoptosis|GO:0006915||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  product disease resistance protein-related  note disease resistance protein-related; FUNCTIONS IN: ATP binding; INVOLVED IN: apoptosis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182); BEST Arabidopsis thaliana protein match is: disease resistance protein-related (TAIR:AT5G45490.2); Has 2803 Blast hits to 2798 proteins in 157 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 8; Plants - 2791; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G45440.1p  transcript_id AT5G45440.1  protein_id AT5G45440.1p  transcript_id AT5G45440.1  
At5g45450	chr5:018415161	0.0	W/18415161-18415811	AT5G45450.1  CDS  gene_syn MFC19.12, MFC19_12  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product iron transporter-related  note iron transporter-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: YSL5 (YELLOW STRIPE LIKE 5); oligopeptide transporter (TAIR:AT3G17650.1); Has 509 Blast hits to 509 proteins in 146 species: Archae - 6; Bacteria - 158; Metazoa - 0; Fungi - 101; Plants - 230; Viruses - 1; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT5G45450.1p  transcript_id AT5G45450.1  protein_id AT5G45450.1p  transcript_id AT5G45450.1  
At5g45460	chr5:018417154	0.0	C/18417154-18419265	AT5G45460.1  CDS  gene_syn MFC19.13, MFC19_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45470.1); Has 399 Blast hits to 343 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 399; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G45460.1p  transcript_id AT5G45460.1  protein_id AT5G45460.1p  transcript_id AT5G45460.1  
At5g45469	chr5:018421744	0.0	W/18421744-18421962	AT5G45469.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G45469.1p  transcript_id AT5G45469.1  protein_id AT5G45469.1p  transcript_id AT5G45469.1  
At5g45470	chr5:018422164	0.0	C/18422164-18424764	AT5G45470.1  CDS  gene_syn MFC19.14, MFC19_14  go_component plasma membrane|GO:0005886|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF594 (InterPro:IPR007658); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45460.1); Has 790 Blast hits to 495 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 790; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G45470.1p  transcript_id AT5G45470.1  protein_id AT5G45470.1p  transcript_id AT5G45470.1  
At5g45480	chr5:018426296	0.0	C/18426296-18428929	AT5G45480.1  CDS  gene_syn MFC19.15, MFC19_15  go_component plasma membrane|GO:0005886|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF594 (InterPro:IPR007658); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45540.1); Has 790 Blast hits to 501 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 790; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G45480.1p  transcript_id AT5G45480.1  protein_id AT5G45480.1p  transcript_id AT5G45480.1  
At5g45490	chr5:018431064	0.0	W/18431064-18432128	AT5G45490.1  CDS  gene_syn MFC19.16, MFC19_16  go_process apoptosis|GO:0006915||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  product disease resistance protein-related  note disease resistance protein-related; FUNCTIONS IN: ATP binding; INVOLVED IN: apoptosis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182); BEST Arabidopsis thaliana protein match is: disease resistance protein-related (TAIR:AT5G45440.1); Has 2741 Blast hits to 2735 proteins in 152 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 7; Plants - 2719; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G45490.1p  transcript_id AT5G45490.1  protein_id AT5G45490.1p  transcript_id AT5G45490.1  
At5g45490	chr5:018431064	0.0	W/18431064-18432128	AT5G45490.2  CDS  gene_syn MFC19.16, MFC19_16  go_process apoptosis|GO:0006915||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  product disease resistance protein-related  note disease resistance protein-related; FUNCTIONS IN: ATP binding; INVOLVED IN: apoptosis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182); BEST Arabidopsis thaliana protein match is: disease resistance protein-related (TAIR:AT5G45440.1); Has 2741 Blast hits to 2735 proteins in 152 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 7; Plants - 2719; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G45490.2p  transcript_id AT5G45490.2  protein_id AT5G45490.2p  transcript_id AT5G45490.2  
At5g45500	chr5:018432636	0.0	C/18432636-18434951	AT5G45500.1  CDS  gene_syn MFC19.17, MFC19_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45520.1); Has 2803 Blast hits to 2302 proteins in 75 species: Archae - 0; Bacteria - 17; Metazoa - 26; Fungi - 0; Plants - 2737; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT5G45500.1p  transcript_id AT5G45500.1  protein_id AT5G45500.1p  transcript_id AT5G45500.1  
At5g45510	chr5:018444798	0.0	W/18444798-18444846,18445187-18448755,18448938-18448952	AT5G45510.2  CDS  gene_syn MFC19.18, MFC19_18  go_function protein binding|GO:0005515||IEA  go_component cytosol|GO:0005829|18433157|IDA  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: ATP binding / protein binding (TAIR:AT4G19050.1); Has 17857 Blast hits to 11702 proteins in 725 species: Archae - 36; Bacteria - 1485; Metazoa - 5778; Fungi - 996; Plants - 4639; Viruses - 58; Other Eukaryotes - 4865 (source: NCBI BLink).  protein_id AT5G45510.2p  transcript_id AT5G45510.2  protein_id AT5G45510.2p  transcript_id AT5G45510.2  
At5g45510	chr5:018444798	0.0	W/18444798-18444846,18445187-18448755,18449021-18449071	AT5G45510.1  CDS  gene_syn MFC19.18, MFC19_18  go_function protein binding|GO:0005515||IEA  go_component cytosol|GO:0005829|18433157|IDA  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: ATP binding / protein binding (TAIR:AT4G19050.1); Has 17868 Blast hits to 11705 proteins in 726 species: Archae - 36; Bacteria - 1514; Metazoa - 5809; Fungi - 980; Plants - 4622; Viruses - 58; Other Eukaryotes - 4849 (source: NCBI BLink).  protein_id AT5G45510.1p  transcript_id AT5G45510.1  protein_id AT5G45510.1p  transcript_id AT5G45510.1  
At5g45520	chr5:018449509	0.0	C/18449509-18453012	AT5G45520.1  CDS  gene_syn MFC19.19, MFC19_19  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45500.1); Has 98083 Blast hits to 48189 proteins in 1651 species: Archae - 285; Bacteria - 10061; Metazoa - 39599; Fungi - 9632; Plants - 7690; Viruses - 662; Other Eukaryotes - 30154 (source: NCBI BLink).  protein_id AT5G45520.1p  transcript_id AT5G45520.1  protein_id AT5G45520.1p  transcript_id AT5G45520.1  
At5g45530	chr5:018456835	0.0	C/18456835-18457222,18454316-18456324	AT5G45530.1  CDS  gene_syn MFC19.20, MFC19_20  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: F mature embryo stage, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF594 (InterPro:IPR007658); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45470.1); Has 774 Blast hits to 500 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 774; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G45530.1p  transcript_id AT5G45530.1  protein_id AT5G45530.1p  transcript_id AT5G45530.1  
At5g45540	chr5:018458294	0.0	C/18458294-18460705	AT5G45540.1  CDS  gene_syn MFC19.21, MFC19_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF594 (InterPro:IPR007658); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45480.1); Has 751 Blast hits to 498 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 751; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G45540.1p  transcript_id AT5G45540.1  protein_id AT5G45540.1p  transcript_id AT5G45540.1  
At5g45550	chr5:018462284	0.0	W/18462284-18462306,18463117-18463165,18463314-18463422,18463607-18463700,18464134-18464267,18464370-18464533,18464766-18464840	AT5G45550.1  CDS  gene_syn MFC19.22, MFC19_22  go_function protein binding|GO:0005515||IEA  go_component nucleus|GO:0005634|15469496|IDA  go_process biological_process|GO:0008150||ND  product mob1/phocein family protein  note mob1/phocein family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mob1/phocein (InterPro:IPR005301); BEST Arabidopsis thaliana protein match is: protein binding (TAIR:AT4G19045.1); Has 961 Blast hits to 955 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 597; Fungi - 188; Plants - 65; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).  protein_id AT5G45550.1p  transcript_id AT5G45550.1  protein_id AT5G45550.1p  transcript_id AT5G45550.1  
At5g45560	chr5:018465561	0.0	W/18465561-18465698,18465902-18465976,18466091-18466144,18466247-18466312,18466513-18466616,18467086-18467153,18467234-18467350,18467532-18467572,18467678-18467778,18468037-18468132,18468465-18468529,18468621-18468692,18468779-18468934,18469050-18469276,18469353-18469398,18469496-18469641,18469739-18469840,18469941-18469985,18470059-18470199,18470277-18470372,18470456-18470557,18470651-18470752	AT5G45560.1  CDS  gene_syn MFC19.23, MFC19_23  go_component mitochondrion|GO:0005739||IEA  go_function lipid binding|GO:0008289||ISS  product pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein  note pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein; FUNCTIONS IN: lipid binding; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769), Lipid-binding START (InterPro:IPR002913), Pleckstrin homology-type (InterPro:IPR011993), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: EDR2; lipid binding (TAIR:AT4G19040.1); Has 281 Blast hits to 278 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 56; Fungi - 0; Plants - 188; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT5G45560.1p  transcript_id AT5G45560.1  protein_id AT5G45560.1p  transcript_id AT5G45560.1  
At5g45570	chr5:018472301	0.0	W/18472301-18473158,18473243-18473518,18473609-18473878,18473972-18474280,18474347-18474594,18474659-18474767,18474879-18475574	AT5G45570.1  CDS  gene_syn K2N11.2, K2N11_2  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_component cellular_component|GO:0005575||ND  go_function peptidase activity|GO:0008233||ISS  product Ulp1 protease family protein  note Ulp1 protease family protein; FUNCTIONS IN: peptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1985 (InterPro:IPR015410), Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: Ulp1 protease family protein (TAIR:AT4G08430.1); Has 493 Blast hits to 433 proteins in 80 species: Archae - 2; Bacteria - 30; Metazoa - 116; Fungi - 21; Plants - 182; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink).  protein_id AT5G45570.1p  transcript_id AT5G45570.1  protein_id AT5G45570.1p  transcript_id AT5G45570.1  
At5g45573	chr5:018476547	0.0	C/18476547-18476576,18476356-18476497,18476175-18476278,18475943-18476125,18475758-18475886	AT5G45573.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 15 Blast hits to 13 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G45573.1p  transcript_id AT5G45573.1  protein_id AT5G45573.1p  transcript_id AT5G45573.1  
At5g45576	chr5:018476996	0.0	C/18476996-18479429	AT5G45576.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 3.0e-84 P-value blast match to Q9S9L1 /206-367 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At5g45580	chr5:018482505	0.0	C/18482505-18482598,18482115-18482191,18481955-18482021,18481730-18481805,18481567-18481645,18481092-18481493	AT5G45580.1  CDS  gene_syn K2N11.5, K2N11_5  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT3G24120.1); Has 905 Blast hits to 897 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 897; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G45580.1p  transcript_id AT5G45580.1  protein_id AT5G45580.1p  transcript_id AT5G45580.1  
At5g45590	chr5:018485997	0.0	C/18485997-18486227,18485265-18485380,18485076-18485160,18484643-18484732	AT5G45590.1  CDS  gene_syn K2N11.6, K2N11_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 52 Blast hits to 52 proteins in 19 species: Archae - 0; Bacteria - 27; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G45590.1p  transcript_id AT5G45590.1  protein_id AT5G45590.1p  transcript_id AT5G45590.1  
At5g45595	chr5:018486675	0.0	C/18486675-18487339	AT5G45595.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to reverse transcriptase-related [Arabidopsis thaliana] (TAIR:AT5G26642.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE89875.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)  
At5g45600	chr5:018488059	0.0	W/18488059-18488163,18488292-18488374,18488751-18488972,18489070-18489257,18489351-18489472,18489580-18489666	AT5G45600.1  CDS  gene_syn GAS41, GLIOMAS 41, K2N11.8, K2N11_8, TAF14B, TBP-ASSOCIATED FACTOR 14B  gene GAS41  function The GSA41 human homolog is expressed in nuclei and binds NuMA, a component of the nuclear matrix in interphase nuclei. In addition to Arabidopsis, GSA41 is found in Drosophila, C.elegans, yeast and man.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634|10913114|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function protein binding|GO:0005515|10913114|ISS  product GAS41; protein binding  note GAS41; FUNCTIONS IN: protein binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: YEATS (InterPro:IPR005033); BEST Arabidopsis thaliana protein match is: TAF14 (TBP-associated factor 14) (TAIR:AT2G18000.1); Has 598 Blast hits to 598 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 297; Fungi - 188; Plants - 28; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT5G45600.1p  transcript_id AT5G45600.1  protein_id AT5G45600.1p  transcript_id AT5G45600.1  
At5g45605	chr5:018490916	0.0	C/18490916-18495757	AT5G45605.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 9.0e-230 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At5g45610	chr5:018499272	0.0	C/18499272-18499673,18499147-18499185,18498941-18499059,18498488-18498561,18498091-18498377,18497936-18498004,18497746-18497828,18497483-18497623,18497295-18497401,18497031-18497188,18496743-18496939,18496397-18496661	AT5G45610.1  CDS  gene_syn MRA19.1, MRA19_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G45610.1p  transcript_id AT5G45610.1  protein_id AT5G45610.1p  transcript_id AT5G45610.1  
At5g45620	chr5:018501590	0.0	W/18501590-18501739,18502034-18502480,18502679-18502759,18502955-18503151,18503245-18503344,18503683-18503868	AT5G45620.1  CDS  gene_syn MRA19.2, MRA19_2  go_component proteasome regulatory particle, lid subcomplex|GO:0008541||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_function molecular_function|GO:0003674||ND  product 26S proteasome regulatory subunit, putative (RPN9)  note 26S proteasome regulatory subunit, putative (RPN9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, lid subcomplex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component region PCI (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: 26S proteasome regulatory subunit, putative (RPN9) (TAIR:AT4G19006.1); Has 757 Blast hits to 754 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 445; Fungi - 133; Plants - 83; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT5G45620.1p  transcript_id AT5G45620.1  protein_id AT5G45620.1p  transcript_id AT5G45620.1  
At5g45620	chr5:018501590	0.0	W/18501590-18501739,18502034-18502480,18502679-18502759,18502955-18503151,18503245-18503422	AT5G45620.2  CDS  gene_syn MRA19.2, MRA19_2  go_component proteasome regulatory particle, lid subcomplex|GO:0008541||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_function molecular_function|GO:0003674||ND  product 26S proteasome regulatory subunit, putative (RPN9)  note 26S proteasome regulatory subunit, putative (RPN9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, lid subcomplex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component region PCI (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: 26S proteasome regulatory subunit, putative (RPN9) (TAIR:AT4G19006.1); Has 338 Blast hits to 336 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 133; Fungi - 86; Plants - 47; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT5G45620.2p  transcript_id AT5G45620.2  protein_id AT5G45620.2p  transcript_id AT5G45620.2  
At5g45630	chr5:018505915	0.0	C/18505915-18506259	AT5G45630.1  CDS  gene_syn MRA19.3, MRA19_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF584 (InterPro:IPR007608); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G18980.1); Has 104 Blast hits to 104 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G45630.1p  transcript_id AT5G45630.1  protein_id AT5G45630.1p  transcript_id AT5G45630.1  
At5g45640	chr5:018511530	0.0	C/18511530-18511616,18511164-18511239,18510825-18511055,18510480-18510591,18509438-18509987,18508964-18509058,18508487-18508838,18508157-18508370,18507489-18508036	AT5G45640.1  CDS  gene_syn MRA19.4, MRA19_4  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product subtilase family protein  note subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259), Peptidase S8, subtilisin-related (InterPro:IPR015500); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT5G45650.1); Has 3009 Blast hits to 2869 proteins in 514 species: Archae - 59; Bacteria - 1475; Metazoa - 83; Fungi - 276; Plants - 852; Viruses - 0; Other Eukaryotes - 264 (source: NCBI BLink).  protein_id AT5G45640.1p  transcript_id AT5G45640.1  protein_id AT5G45640.1p  transcript_id AT5G45640.1  
At5g45650	chr5:018518716	0.0	C/18518716-18518790,18518352-18518544,18518026-18518241,18517326-18517437,18515117-18515684,18514927-18515021,18514479-18514836,18514173-18514386,18513520-18514064	AT5G45650.1  CDS  gene_syn MRA19.5, MRA19_5  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product subtilase family protein  note subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT5G45640.1); Has 3402 Blast hits to 3219 proteins in 566 species: Archae - 77; Bacteria - 1851; Metazoa - 38; Fungi - 160; Plants - 895; Viruses - 0; Other Eukaryotes - 381 (source: NCBI BLink).  protein_id AT5G45650.1p  transcript_id AT5G45650.1  protein_id AT5G45650.1p  transcript_id AT5G45650.1  
At5g45660	chr5:018525103	0.0	W/18525103-18525612,18526556-18526726	AT5G45660.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 15 Blast hits to 15 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G45660.1p  transcript_id AT5G45660.1  protein_id AT5G45660.1p  transcript_id AT5G45660.1  
At5g45670	chr5:018528600	0.0	W/18528600-18528837,18528929-18529053,18529202-18529447,18529600-18529855,18529941-18530164	AT5G45670.1  CDS  gene_syn MRA19.6, MRA19_6  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT4G18970.1); Has 1931 Blast hits to 1918 proteins in 194 species: Archae - 0; Bacteria - 286; Metazoa - 1; Fungi - 58; Plants - 1566; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT5G45670.1p  transcript_id AT5G45670.1  protein_id AT5G45670.1p  transcript_id AT5G45670.1  
At5g45680	chr5:018530894	0.0	W/18530894-18531232,18531326-18531418,18531502-18531562,18531906-18531974,18532064-18532128	AT5G45680.1  CDS  gene_syn MRA19.7, MRA19_7  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_process protein folding|GO:0006457||IEA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543||ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  go_function FK506 binding|GO:0005528||ISS  product FK506-binding protein 1 (FKBP13)  note FK506-binding protein 1 (FKBP13); FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: thylakoid lumen, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative (TAIR:AT4G39710.1); Has 6942 Blast hits to 6551 proteins in 1120 species: Archae - 86; Bacteria - 3279; Metazoa - 1434; Fungi - 355; Plants - 420; Viruses - 0; Other Eukaryotes - 1368 (source: NCBI BLink).  protein_id AT5G45680.1p  transcript_id AT5G45680.1  protein_id AT5G45680.1p  transcript_id AT5G45680.1  
At5g45690	chr5:018535971	0.0	C/18535971-18536259,18535760-18535842,18535538-18535652,18535139-18535395	AT5G45690.1  CDS  gene_syn MRA19.8, MRA19_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: seed, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1264 (InterPro:IPR010686); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G18920.1); Has 188 Blast hits to 188 proteins in 83 species: Archae - 0; Bacteria - 84; Metazoa - 0; Fungi - 43; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G45690.1p  transcript_id AT5G45690.1  protein_id AT5G45690.1p  transcript_id AT5G45690.1  
At5g45700	chr5:018537378	0.0	W/18537378-18538196	AT5G45700.1  CDS  gene_syn MRA19.9, MRA19_9  go_function phosphatase activity|GO:0016791||IEA  product NLI interacting factor (NIF) family protein  note NLI interacting factor (NIF) family protein; FUNCTIONS IN: phosphatase activity; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Dullard-like phosphatase domain (InterPro:IPR011948), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: NLI interacting factor (NIF) family protein (TAIR:AT1G29770.1); Has 1973 Blast hits to 1973 proteins in 188 species: Archae - 0; Bacteria - 10; Metazoa - 727; Fungi - 364; Plants - 183; Viruses - 14; Other Eukaryotes - 675 (source: NCBI BLink).  protein_id AT5G45700.1p  transcript_id AT5G45700.1  protein_id AT5G45700.1p  transcript_id AT5G45700.1  
At5g45710	chr5:018541576	0.0	W/18541576-18541791,18541885-18542706	AT5G45710.1  CDS  gene_syn AT-HSFA4C, HEAT SHOCK TRANSCRIPTION FACTOR A4C, HSFA4C, MRA19.11, MRA19_11, RHA1, ROOT HANDEDNESS 1  gene RHA1  function member of Heat Stress Transcription Factor (Hsf) family  go_component nucleus|GO:0005634||IEA  go_process response to heat|GO:0009408|18381353|IEP  go_process response to auxin stimulus|GO:0009733|18381353|IMP  go_process positive gravitropism|GO:0009958|18381353|IMP  go_process root development|GO:0048364|18381353|IMP  go_process lateral root development|GO:0048527|18381353|IMP  go_process fruit morphogenesis|GO:0048530|18381353|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product RHA1 (ROOT HANDEDNESS 1); DNA binding / transcription factor  note ROOT HANDEDNESS 1 (RHA1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: AT-HSFA4A; DNA binding / transcription factor (TAIR:AT4G18880.1); Has 1520 Blast hits to 1501 proteins in 176 species: Archae - 0; Bacteria - 7; Metazoa - 340; Fungi - 324; Plants - 520; Viruses - 0; Other Eukaryotes - 329 (source: NCBI BLink).  protein_id AT5G45710.1p  transcript_id AT5G45710.1  protein_id AT5G45710.1p  transcript_id AT5G45710.1  
At5g45710	chr5:018541957	0.0	W/18541957-18542706	AT5G45710.2  CDS  gene_syn AT-HSFA4C, HEAT SHOCK TRANSCRIPTION FACTOR A4C, HSFA4C, MRA19.11, MRA19_11, RHA1, ROOT HANDEDNESS 1  gene RHA1  function member of Heat Stress Transcription Factor (Hsf) family  go_process response to heat|GO:0009408|18381353|IEP  go_process response to auxin stimulus|GO:0009733|18381353|IMP  go_process positive gravitropism|GO:0009958|18381353|IMP  go_process root development|GO:0048364|18381353|IMP  go_process lateral root development|GO:0048527|18381353|IMP  go_process fruit morphogenesis|GO:0048530|18381353|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product RHA1 (ROOT HANDEDNESS 1); DNA binding / transcription factor  note ROOT HANDEDNESS 1 (RHA1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 6 processes; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: AT-HSFA4A; DNA binding / transcription factor (TAIR:AT4G18880.1); Has 362 Blast hits to 349 proteins in 62 species: Archae - 0; Bacteria - 4; Metazoa - 56; Fungi - 0; Plants - 246; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT5G45710.2p  transcript_id AT5G45710.2  protein_id AT5G45710.2p  transcript_id AT5G45710.2  
At5g45715	chr5:018542980	0.0	C/18542980-18543051	AT5G45715.1  tRNA  gene_syn 67792.TRNA-GLU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Glu (anticodon: TTC)  transcript_id AT5G45715.1  
At5g45720	chr5:018544905	0.0	C/18544905-18546629,18544616-18544835,18544155-18544532,18543671-18544082,18543529-18543592,18543338-18543439	AT5G45720.1  CDS  gene_syn MRA19.13, MRA19_13  go_component DNA polymerase III complex|GO:0009360||IEA  go_process DNA replication|GO:0006260||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed DNA polymerase activity|GO:0003887||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  product ATP binding / DNA binding / DNA-directed DNA polymerase/ nucleoside-triphosphatase/ nucleotide binding  note ATP binding / DNA binding / DNA-directed DNA polymerase/ nucleoside-triphosphatase/ nucleotide binding; FUNCTIONS IN: nucleoside-triphosphatase activity, DNA binding, DNA-directed DNA polymerase activity, nucleotide binding, ATP binding; INVOLVED IN: DNA replication; LOCATED IN: DNA polymerase III complex; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA polymerase III clamp loader subunit, C-terminal (InterPro:IPR008921), DNA polymerase III, subunits gamma and tau (InterPro:IPR012763); BEST Arabidopsis thaliana protein match is: ATP binding / DNA binding / DNA-directed DNA polymerase/ nucleoside-triphosphatase/ nucleotide binding (TAIR:AT4G18820.1); Has 8758 Blast hits to 8744 proteins in 1524 species: Archae - 245; Bacteria - 3841; Metazoa - 326; Fungi - 319; Plants - 157; Viruses - 24; Other Eukaryotes - 3846 (source: NCBI BLink).  protein_id AT5G45720.1p  transcript_id AT5G45720.1  protein_id AT5G45720.1p  transcript_id AT5G45720.1  
At5g45730	chr5:018551976	0.0	W/18551976-18553414,18553551-18553671	AT5G45730.1  CDS  gene_syn MRA19.15, MRA19_15  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT3G07000.1); Has 1228 Blast hits to 487 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 1213; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G45730.1p  transcript_id AT5G45730.1  protein_id AT5G45730.1p  transcript_id AT5G45730.1  
At5g45740	chr5:018558055	0.0	C/18558055-18558097,18557327-18557449,18557124-18557243,18556975-18557045	AT5G45740.1  CDS  gene_syn MRA19.16, MRA19_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53400.1); Has 223 Blast hits to 223 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 35; Plants - 47; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT5G45740.1p  transcript_id AT5G45740.1  protein_id AT5G45740.1p  transcript_id AT5G45740.1  
At5g45745	chr5:018558845	0.0	W/18558845-18558916	AT5G45745.1  tRNA  gene_syn 67792.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: TCC)  transcript_id AT5G45745.1  
At5g45750	chr5:018559318	0.0	W/18559318-18559538,18560210-18560639	AT5G45750.1  CDS  gene_syn Arabidopsis Rab GTPase homolog A1c, AtRABA1c, MRA19.18, MRA19_18  gene AtRABA1c  go_component nucleus|GO:0005634|14617066|IDA  go_component vacuole|GO:0005773|14760709|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product AtRABA1c (Arabidopsis Rab GTPase homolog A1c); GTP binding  note Arabidopsis Rab GTPase homolog A1c (AtRABA1c); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane, nucleus, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D); GTP binding (TAIR:AT4G18800.1); Has 22761 Blast hits to 22719 proteins in 630 species: Archae - 21; Bacteria - 114; Metazoa - 12574; Fungi - 2957; Plants - 2059; Viruses - 19; Other Eukaryotes - 5017 (source: NCBI BLink).  protein_id AT5G45750.1p  transcript_id AT5G45750.1  protein_id AT5G45750.1p  transcript_id AT5G45750.1  
At5g45760	chr5:018561121	0.0	W/18561121-18561228,18561331-18561427,18561518-18561579,18561669-18561731,18561817-18561876,18561979-18562035,18562132-18562174,18562245-18562322,18562411-18562835,18562916-18563005	AT5G45760.1  CDS  gene_syn MRA19.19, MRA19_19  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: heterotrimeric G-protein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: nucleotide binding (TAIR:AT1G11160.1); Has 2573 Blast hits to 2098 proteins in 225 species: Archae - 6; Bacteria - 544; Metazoa - 942; Fungi - 461; Plants - 179; Viruses - 0; Other Eukaryotes - 441 (source: NCBI BLink).  protein_id AT5G45760.1p  transcript_id AT5G45760.1  protein_id AT5G45760.1p  transcript_id AT5G45760.1  
At5g45760	chr5:018561121	0.0	W/18561121-18561228,18561331-18561427,18561518-18561579,18561669-18561731,18561817-18561876,18561979-18562035,18562132-18562174,18562411-18562835,18562916-18563005	AT5G45760.2  CDS  gene_syn MRA19.19, MRA19_19  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: heterotrimeric G-protein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); Has 882 Blast hits to 726 proteins in 126 species: Archae - 4; Bacteria - 279; Metazoa - 222; Fungi - 133; Plants - 63; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink).  protein_id AT5G45760.2p  transcript_id AT5G45760.2  protein_id AT5G45760.2p  transcript_id AT5G45760.2  
At5g45770	chr5:018563568	0.0	W/18563568-18564845	AT5G45770.1  CDS  gene_syn AtRLP55, MRA19.20, MRA19_20, Receptor Like Protein 55  gene AtRLP55  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product AtRLP55 (Receptor Like Protein 55); protein binding  note Receptor Like Protein 55 (AtRLP55); FUNCTIONS IN: protein binding; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP51 (Receptor Like Protein 51); protein binding (TAIR:AT4G18760.1); Has 59798 Blast hits to 21055 proteins in 796 species: Archae - 16; Bacteria - 3315; Metazoa - 20022; Fungi - 703; Plants - 32419; Viruses - 11; Other Eukaryotes - 3312 (source: NCBI BLink).  protein_id AT5G45770.1p  transcript_id AT5G45770.1  protein_id AT5G45770.1p  transcript_id AT5G45770.1  
At5g45775	chr5:018566297	0.0	C/18566297-18566377,18566159-18566201,18565876-18566071,18565281-18565479	AT5G45775.1  CDS  go_component vacuole|GO:0005773|15215502|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component cytosolic large ribosomal subunit|GO:0022625||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L11 (RPL11D)  note 60S ribosomal protein L11 (RPL11D); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, vacuole; EXPRESSED IN: male gametophyte, leaf; CONTAINS InterPro DOMAIN/s: Beta tubulin, autoregulation binding site (InterPro:IPR013838), Ribosomal protein L5 (InterPro:IPR002132); BEST Arabidopsis thaliana protein match is: RPL16B; structural constituent of ribosome (TAIR:AT4G18730.1); Has 5106 Blast hits to 5106 proteins in 1612 species: Archae - 218; Bacteria - 2737; Metazoa - 209; Fungi - 107; Plants - 188; Viruses - 0; Other Eukaryotes - 1647 (source: NCBI BLink).  protein_id AT5G45775.1p  transcript_id AT5G45775.1  protein_id AT5G45775.1p  transcript_id AT5G45775.1  
At5g45775	chr5:018566494	0.0	C/18566494-18566496,18566297-18566404,18566159-18566201,18565876-18566071,18565281-18565479	AT5G45775.2  CDS  go_component vacuole|GO:0005773|15215502|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component cytosolic large ribosomal subunit|GO:0022625||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L11 (RPL11D)  note 60S ribosomal protein L11 (RPL11D); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, vacuole; EXPRESSED IN: male gametophyte, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L5 (InterPro:IPR002132); BEST Arabidopsis thaliana protein match is: RPL16B; structural constituent of ribosome (TAIR:AT4G18730.1); Has 5263 Blast hits to 5263 proteins in 1657 species: Archae - 218; Bacteria - 2825; Metazoa - 209; Fungi - 107; Plants - 188; Viruses - 0; Other Eukaryotes - 1716 (source: NCBI BLink).  protein_id AT5G45775.2p  transcript_id AT5G45775.2  protein_id AT5G45775.2p  transcript_id AT5G45775.2  
At5g45780	chr5:018569508	0.0	C/18569508-18569625,18569298-18569430,18569141-18569212,18568915-18569058,18568769-18568840,18568610-18568669,18568458-18568531,18568230-18568376,18567801-18568139,18567328-18567719,18566946-18567239	AT5G45780.1  CDS  gene_syn MRA19.22, MRA19_22  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: NIK3 (NSP-INTERACTING KINASE 3); kinase (TAIR:AT1G60800.1); Has 115909 Blast hits to 84542 proteins in 3175 species: Archae - 67; Bacteria - 8424; Metazoa - 37950; Fungi - 5720; Plants - 48219; Viruses - 382; Other Eukaryotes - 15147 (source: NCBI BLink).  protein_id AT5G45780.1p  transcript_id AT5G45780.1  protein_id AT5G45780.1p  transcript_id AT5G45780.1  
At5g45790	chr5:018572473	0.0	W/18572473-18572535,18572663-18573664	AT5G45790.1  CDS  gene_syn MRA19.23, MRA19_23  go_component intracellular|GO:0005622||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  product ubiquitin thiolesterase  note ubiquitin thiolesterase; FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (InterPro:IPR001578); BEST Arabidopsis thaliana protein match is: RPD1 (ROOT PRIMORDIUM DEFECTIVE 1); ubiquitin thiolesterase (TAIR:AT4G33495.1); Has 214 Blast hits to 214 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 214; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G45790.1p  transcript_id AT5G45790.1  protein_id AT5G45790.1p  transcript_id AT5G45790.1  
At5g45800	chr5:018577592	0.0	C/18577592-18578972,18575765-18576384	AT5G45800.1  CDS  gene_syn MEE62, MRA19.24, MRA19_24, maternal effect embryo arrest 62  gene MEE62  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product MEE62 (maternal effect embryo arrest 62); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note maternal effect embryo arrest 62 (MEE62); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: embryonic development ending in seed dormancy, transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT2G24230.1); Has 55296 Blast hits to 36416 proteins in 1147 species: Archae - 36; Bacteria - 3164; Metazoa - 17246; Fungi - 1111; Plants - 30254; Viruses - 106; Other Eukaryotes - 3379 (source: NCBI BLink).  protein_id AT5G45800.1p  transcript_id AT5G45800.1  protein_id AT5G45800.1p  transcript_id AT5G45800.1  
At5g45810	chr5:018584942	0.0	W/18584942-18586393	AT5G45810.1  CDS  gene_syn CBL-INTERACTING PROTEIN KINASE 19, CIPK19, K15I22.1, K15I22_1, SNF1-RELATED PROTEIN KINASE 3.5, SnRK3.5  gene CIPK19  function Encodes a member of the SNF1-related kinase (SnRK) gene family (SnRK3.5), which has also been reported as a member of the CBL-interacting protein kinases (CIPK19).  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product CIPK19 (CBL-INTERACTING PROTEIN KINASE 19); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note CBL-INTERACTING PROTEIN KINASE 19 (CIPK19); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: signal transduction, protein amino acid phosphorylation; EXPRESSED IN: petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CIPK12 (CBL-INTERACTING PROTEIN KINASE 12); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT4G18700.1); Has 95915 Blast hits to 94375 proteins in 3169 species: Archae - 78; Bacteria - 8773; Metazoa - 41112; Fungi - 8687; Plants - 18367; Viruses - 479; Other Eukaryotes - 18419 (source: NCBI BLink).  protein_id AT5G45810.1p  transcript_id AT5G45810.1  protein_id AT5G45810.1p  transcript_id AT5G45810.1  
At5g45820	chr5:018587081	0.0	C/18587081-18588400	AT5G45820.1  CDS  gene_syn CBL-INTERACTING PROTEIN KINASE 20, CIPK20, K15I22.2, K15I22_2, PKS18, PROTEIN KINASE 18, SNF1-RELATED PROTEIN KINASE 3.6, SnRK3.6  gene CIPK20  function Encodes a CBL-interacting serine/threonine protein kinase comprised of an N-terminal kinase catalytic domain similar to SNF1/AMPK and a unique C-terminal regulatory domain.  go_component cytosol|GO:0005829||TAS  go_process response to abscisic acid stimulus|GO:0009737|12198122|IMP  go_function protein serine/threonine kinase activity|GO:0004674|12198122|TAS  go_function kinase activity|GO:0016301||ISS  product CIPK20 (CBL-INTERACTING PROTEIN KINASE 20); kinase/ protein serine/threonine kinase  note CBL-INTERACTING PROTEIN KINASE 20 (CIPK20); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: cytosol; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: SIP1 (SOS3-INTERACTING PROTEIN 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G58380.1); Has 96879 Blast hits to 95313 proteins in 3191 species: Archae - 94; Bacteria - 8703; Metazoa - 41841; Fungi - 8854; Plants - 18301; Viruses - 484; Other Eukaryotes - 18602 (source: NCBI BLink).  protein_id AT5G45820.1p  transcript_id AT5G45820.1  protein_id AT5G45820.1p  transcript_id AT5G45820.1  
At5g45830	chr5:018591010	0.0	C/18591010-18591400,18590245-18590655,18589669-18589742	AT5G45830.1  CDS  gene_syn DELAY OF GERMINATION 1, DOG1, GLUCOSE SENSING QTL 5, GSQ5, K15I22.3, K15I22_3  gene DOG1  function Encodes DOG1 (DELAY OF GERMINATION 1). A quantitative trait locus involved in the control of seed dormancy. Belongs to a novel plant-specific gene family whose members include: DOG1-like 1-4 (DOGL1-4, At4g18660, At4g18680, At4g18690, At4g18650 respectively) and DOG1. DOG1 expression is seed-specific.  go_component cellular_component|GO:0005575||ND  go_process seed dormancy|GO:0010162|17065317|IMP  go_function molecular_function|GO:0003674||ND  product DOG1 (DELAY OF GERMINATION 1)  note DELAY OF GERMINATION 1 (DOG1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: seed; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G18690.1); Has 272 Blast hits to 271 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 272; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G45830.1p  transcript_id AT5G45830.1  protein_id AT5G45830.1p  transcript_id AT5G45830.1  
At5g45840	chr5:018597122	0.0	C/18597122-18597221,18596897-18597032,18596749-18596820,18596520-18596663,18596283-18596432,18595979-18596028,18595463-18595888,18595197-18595387,18594986-18595118,18594742-18594896,18594426-18594617,18594080-18594337	AT5G45840.1  CDS  gene_syn K15I22.4, K15I22_4  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: MRH1 (morphogenesis of root hair 1); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT4G18640.1); Has 42058 Blast hits to 20200 proteins in 558 species: Archae - 8; Bacteria - 405; Metazoa - 3987; Fungi - 153; Plants - 35132; Viruses - 38; Other Eukaryotes - 2335 (source: NCBI BLink).  protein_id AT5G45840.1p  transcript_id AT5G45840.1  protein_id AT5G45840.1p  transcript_id AT5G45840.1  
At5g45850	chr5:018600140	0.0	C/18600140-18601435,18599998-18600039	AT5G45850.1  CDS  gene_syn K15I22.5, K15I22_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, embryo, sepal, pedicel, flower; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G18630.1); Has 46 Blast hits to 40 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT5G45850.1p  transcript_id AT5G45850.1  protein_id AT5G45850.1p  transcript_id AT5G45850.1  
At5g45860	chr5:018604101	0.0	C/18604101-18604586	AT5G45860.1  CDS  gene_syn K15I22.6, K15I22_6  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product Bet v I allergen family protein  note Bet v I allergen family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: Bet v I allergen family protein (TAIR:AT5G45870.1); Has 271 Blast hits to 271 proteins in 43 species: Archae - 0; Bacteria - 7; Metazoa - 4; Fungi - 0; Plants - 260; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G45860.1p  transcript_id AT5G45860.1  protein_id AT5G45860.1p  transcript_id AT5G45860.1  
At5g45870	chr5:018606564	0.0	C/18606564-18607043	AT5G45870.1  CDS  gene_syn K15I22.7, K15I22_7  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product Bet v I allergen family protein  note Bet v I allergen family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: Bet v I allergen family protein (TAIR:AT5G45860.1); Has 200 Blast hits to 200 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G45870.1p  transcript_id AT5G45870.1  protein_id AT5G45870.1p  transcript_id AT5G45870.1  
At5g45875	chr5:018608845	0.0	C/18608845-18608911,18608457-18608671	AT5G45875.1  CDS  gene_syn SCR-Like 27, SCRL27  gene SCRL27  function Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165||IEA  product SCRL27 (SCR-Like 27)  note SCR-Like 27 (SCRL27); INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility response (InterPro:IPR010682); BEST Arabidopsis thaliana protein match is: SCRL26 (SCR-Like 26) (TAIR:AT4G22105.1); Has 32 Blast hits to 32 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G45875.1p  transcript_id AT5G45875.1  protein_id AT5G45875.1p  transcript_id AT5G45875.1  
At5g45880	chr5:018610889	0.0	C/18610889-18611066,18609934-18610280	AT5G45880.1  CDS  gene_syn K15I22.8, K15I22_8  go_component extracellular space|GO:0005615||IEA  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pollen Ole e 1 allergen and extensin family protein  note pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: extracellular space, endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen and extensin (InterPro:IPR006041), Allergen Ole e 1, conserved site (InterPro:IPR006040); BEST Arabidopsis thaliana protein match is: pollen Ole e 1 allergen and extensin family protein (TAIR:AT4G18596.1); Has 215 Blast hits to 215 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G45880.1p  transcript_id AT5G45880.1  protein_id AT5G45880.1p  transcript_id AT5G45880.1  
At5g45890	chr5:018613300	0.0	W/18613300-18613753,18614026-18614286,18614434-18614759	AT5G45890.1  CDS  gene_syn CI0010, K15I22.9, K15I22_9, SAG12, SENESCENCE-ASSOCIATED GENE 12  gene SAG12  function Senescence-associated gene 12 (SAG12) encoding a cysteine protease influenced by cytokinin, auxin, and sugars.Localized to special vacuole found during senescence called senescence associated vacuoles which are different from central vacuole in the tonoplast composition and pH.  go_component senescence associated vacuole|GO:0010282|15743448|IDA  go_process proteolysis|GO:0006508||ISS  go_process aging|GO:0007568|10579486|IEP  go_process aging|GO:0007568|8592746|TAS  go_process response to ethylene stimulus|GO:0009723||IEP  go_process leaf senescence|GO:0010150|15743448|TAS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product SAG12 (SENESCENCE-ASSOCIATED GENE 12); cysteine-type peptidase  note SENESCENCE-ASSOCIATED GENE 12 (SAG12); FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: response to ethylene stimulus, leaf senescence, proteolysis, aging; LOCATED IN: senescence associated vacuole; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: cysteine proteinase, putative (TAIR:AT2G27420.1); Has 6191 Blast hits to 6146 proteins in 602 species: Archae - 37; Bacteria - 137; Metazoa - 2823; Fungi - 4; Plants - 1215; Viruses - 123; Other Eukaryotes - 1852 (source: NCBI BLink).  protein_id AT5G45890.1p  transcript_id AT5G45890.1  protein_id AT5G45890.1p  transcript_id AT5G45890.1  
At5g45900	chr5:018615304	0.0	W/18615304-18615442,18615723-18615934,18616019-18616265,18616356-18616450,18616530-18616822,18616906-18617050,18617137-18617484,18617573-18617734,18617831-18617946,18618024-18618186,18618263-18618436	AT5G45900.1  CDS  gene_syn APG7, ATAPG7, ATATG7, ATG7, AUTOPHAGY 7, AUTOPHAGY-RELATED 7, K15I22.10, K15I22_10  gene APG7  function Component of autophagy conjugation pathway. Required for proper senescence.  go_component cellular_component|GO:0005575||ND  go_process protein amino acid lipidation|GO:0006497|12070171|ISS  go_process autophagy|GO:0006914|12070171|ISS  go_process aging|GO:0007568|12070171|IMP  go_process senescence|GO:0010149|16040659|IMP  go_process leaf senescence|GO:0010150|15743448|TAS  go_function APG8 activating enzyme activity|GO:0019779|12070171|ISS  product APG7 (AUTOPHAGY 7); APG8 activating enzyme  note AUTOPHAGY 7 (APG7); FUNCTIONS IN: APG8 activating enzyme activity; INVOLVED IN: autophagy, leaf senescence, protein amino acid lipidation, aging, senescence; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: E1-like protein-activating enzyme Gsa7p/Apg7p (InterPro:IPR006285), UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594), Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding (InterPro:IPR016040); Has 2267 Blast hits to 2247 proteins in 522 species: Archae - 21; Bacteria - 854; Metazoa - 228; Fungi - 160; Plants - 46; Viruses - 0; Other Eukaryotes - 958 (source: NCBI BLink).  protein_id AT5G45900.1p  transcript_id AT5G45900.1  protein_id AT5G45900.1p  transcript_id AT5G45900.1  
At5g45905	chr5:018619461	0.0	W/18619461-18619870	AT5G45905.1  pseudogenic_transcript  pseudo  function Encodes a defensin-like (DEFL) family protein.  
At5g45910	chr5:018622018	0.0	C/18622018-18622264,18621597-18621827,18621118-18621266,18620741-18621017,18620420-18620634	AT5G45910.1  CDS  gene_syn K15I22.11, K15I22_11  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: ARAB-1; carboxylesterase/ hydrolase, acting on ester bonds (TAIR:AT1G28670.1); Has 1640 Blast hits to 1612 proteins in 94 species: Archae - 0; Bacteria - 92; Metazoa - 1; Fungi - 0; Plants - 1545; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G45910.1p  transcript_id AT5G45910.1  protein_id AT5G45910.1p  transcript_id AT5G45910.1  
At5g45920	chr5:018622822	0.0	W/18622822-18622923,18623123-18623350,18624040-18624107,18624249-18624413,18624515-18624677	AT5G45920.1  CDS  gene_syn K15I22.12, K15I22_12  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity|GO:0016787||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_component cellular_component|GO:0005575||ND  go_function carboxylesterase activity|GO:0004091||ISS  product carboxylesterase/ hydrolase/ hydrolase, acting on ester bonds  note carboxylesterase/ hydrolase/ hydrolase, acting on ester bonds; FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Esterase, SGNH hydrolase-type, subgroup (InterPro:IPR013831), Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT5G62930.1); Has 348 Blast hits to 347 proteins in 123 species: Archae - 0; Bacteria - 74; Metazoa - 66; Fungi - 100; Plants - 80; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT5G45920.1p  transcript_id AT5G45920.1  protein_id AT5G45920.1p  transcript_id AT5G45920.1  
At5g45930	chr5:018628095	0.0	W/18628095-18628197,18628301-18628401,18628513-18629565	AT5G45930.1  CDS  gene_syn CHL I2, CHL12, CHLI-2, CHLI2, K15I22.13, K15I22_13, MAGNESIUM CHELATASE I2  gene CHLI2  function encodes a second Chl I gene (CHLI2), a subunit of magnesium chelatase which is required for chlorophyll biosynthesis. Has ATPase activity, regulated by TRX-f. Involved in the assembly of the Mg chelatase complex.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507||ISS  go_component chloroplast stroma|GO:0009570|11842180|IDA  go_component magnesium chelatase complex|GO:0010007|11842180|TAS  go_component magnesium chelatase complex|GO:0010007|18846282|NAS  go_process chlorophyll biosynthetic process|GO:0015995|11842180|ISS  go_process chlorophyll biosynthetic process|GO:0015995|18846282|IMP  go_process chlorophyll biosynthetic process|GO:0015995|19363094|IMP  go_process chlorophyll biosynthetic process|GO:0015995|7575622|TAS  go_function magnesium chelatase activity|GO:0016851|11842180|ISS  go_function magnesium chelatase activity|GO:0016851||ISS  go_function ATPase activity|GO:0016887|18846282|IDA  product CHLI2 (MAGNESIUM CHELATASE I2); ATPase/ magnesium chelatase  note MAGNESIUM CHELATASE I2 (CHLI2); FUNCTIONS IN: magnesium chelatase activity, ATPase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: magnesium chelatase complex, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Magnesium chelatase, ChlI subunit (InterPro:IPR000523), Magnesium chelatase, ATPase subunit I (InterPro:IPR011775); BEST Arabidopsis thaliana protein match is: CHLI1; ATPase/ magnesium chelatase (TAIR:AT4G18480.1); Has 4117 Blast hits to 4117 proteins in 919 species: Archae - 171; Bacteria - 2817; Metazoa - 3; Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes - 995 (source: NCBI BLink).  protein_id AT5G45930.1p  transcript_id AT5G45930.1  protein_id AT5G45930.1p  transcript_id AT5G45930.1  
At5g45940	chr5:018630399	0.0	C/18630399-18630597,18630165-18630307,18629961-18630080,18629665-18629871	AT5G45940.1  CDS  gene_syn Arabidopsis thaliana Nudix hydrolase homolog 11, K15I22.14, K15I22_14, atnudt11  gene atnudt11  function Encodes a CoA pyrophosphatase, also has minor activity of NADH pyrophosphatase. Most strongly expressed in embryo cotyledon and hypocotyl, flower, and phloem of vascular tissue. Over-expression mutant had a bigger plant with wider rosette.  go_component cytosol|GO:0005829|15878881|RCA  go_process multicellular organismal development|GO:0007275|19340986|IMP  go_function NAD+ diphosphatase activity|GO:0000210|19340986|IDA  go_function CoA pyrophosphatase activity|GO:0010945|19340986|IDA  go_function hydrolase activity|GO:0016787||ISS  product atnudt11 (Arabidopsis thaliana Nudix hydrolase homolog 11); hydrolase  note Arabidopsis thaliana Nudix hydrolase homolog 11 (atnudt11); FUNCTIONS IN: NAD+ diphosphatase activity, hydrolase activity, CoA pyrophosphatase activity; INVOLVED IN: multicellular organismal development, biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), NUDIX hydrolase, core (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15); hydrolase (TAIR:AT1G28960.5); Has 2494 Blast hits to 2494 proteins in 791 species: Archae - 27; Bacteria - 1322; Metazoa - 139; Fungi - 125; Plants - 57; Viruses - 0; Other Eukaryotes - 824 (source: NCBI BLink).  protein_id AT5G45940.1p  transcript_id AT5G45940.1  protein_id AT5G45940.1p  transcript_id AT5G45940.1  
At5g45940	chr5:018630399	0.0	C/18630399-18630597,18630165-18630307,18629961-18630080,18629837-18629866	AT5G45940.2  CDS  gene_syn Arabidopsis thaliana Nudix hydrolase homolog 11, K15I22.14, K15I22_14, atnudt11  gene atnudt11  function Encodes a CoA pyrophosphatase, also has minor activity of NADH pyrophosphatase. Most strongly expressed in embryo cotyledon and hypocotyl, flower, and phloem of vascular tissue. Over-expression mutant had a bigger plant with wider rosette.  go_process multicellular organismal development|GO:0007275|19340986|IMP  go_function NAD+ diphosphatase activity|GO:0000210|19340986|IDA  go_function CoA pyrophosphatase activity|GO:0010945|19340986|IDA  go_function hydrolase activity|GO:0016787||ISS  product atnudt11 (Arabidopsis thaliana Nudix hydrolase homolog 11); hydrolase  note Arabidopsis thaliana Nudix hydrolase homolog 11 (atnudt11); FUNCTIONS IN: NAD+ diphosphatase activity, hydrolase activity, CoA pyrophosphatase activity; INVOLVED IN: multicellular organismal development, biological_process unknown; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), NUDIX hydrolase, core (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15); hydrolase (TAIR:AT1G28960.5); Has 2450 Blast hits to 2450 proteins in 783 species: Archae - 25; Bacteria - 1314; Metazoa - 135; Fungi - 128; Plants - 57; Viruses - 0; Other Eukaryotes - 791 (source: NCBI BLink).  protein_id AT5G45940.2p  transcript_id AT5G45940.2  protein_id AT5G45940.2p  transcript_id AT5G45940.2  
At5g45950	chr5:018634155	0.0	W/18634155-18634428,18634514-18634641,18634748-18634981,18635967-18636213,18636322-18636512	AT5G45950.1  CDS  gene_syn K15I22.15, K15I22_15  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT5G45960.1); Has 1989 Blast hits to 1968 proteins in 231 species: Archae - 0; Bacteria - 404; Metazoa - 1; Fungi - 6; Plants - 1558; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT5G45950.1p  transcript_id AT5G45950.1  protein_id AT5G45950.1p  transcript_id AT5G45950.1  
At5g45960	chr5:018640025	0.0	C/18640025-18640319,18639808-18639938,18638725-18638958,18637806-18638076,18637174-18637370	AT5G45960.1  CDS  gene_syn K15I22.16, K15I22_16  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT1G06990.1); Has 1747 Blast hits to 1730 proteins in 136 species: Archae - 0; Bacteria - 163; Metazoa - 1; Fungi - 13; Plants - 1552; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT5G45960.1p  transcript_id AT5G45960.1  protein_id AT5G45960.1p  transcript_id AT5G45960.1  
At5g45970	chr5:018643761	0.0	W/18643761-18643859,18644181-18644268,18644354-18644463,18644584-18644647,18645236-18645300,18645379-18645444,18645645-18645758	AT5G45970.1  CDS  gene_syn ARABIDOPSIS RAC-LIKE 2, ARABIDOPSIS THALIANA RAC 2, ARAC2, ATRAC2, ATROP7, MCL19.1, MCL19_1, RHO-RELATED PROTEIN FROM PLANTS 7, ROP7  gene ARAC2  function Encodes a Rac-like protein ARAC2. A member of ROP GTPase gene family.  go_component intracellular|GO:0005622||IEA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product ARAC2 (ARABIDOPSIS RAC-LIKE 2); GTP binding  note ARABIDOPSIS RAC-LIKE 2 (ARAC2); FUNCTIONS IN: GTP binding; INVOLVED IN: small GTPase mediated signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rho type (InterPro:IPR003578); BEST Arabidopsis thaliana protein match is: ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1); GTP binding / GTPase activating protein binding / GTPase/ protein binding (TAIR:AT3G51300.1); Has 19866 Blast hits to 19846 proteins in 568 species: Archae - 9; Bacteria - 49; Metazoa - 10838; Fungi - 2728; Plants - 1727; Viruses - 19; Other Eukaryotes - 4496 (source: NCBI BLink).  protein_id AT5G45970.1p  transcript_id AT5G45970.1  protein_id AT5G45970.1p  transcript_id AT5G45970.1  
At5g45973	chr5:018646928	0.0	C/18646928-18647038	AT5G45973.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G45973.1p  transcript_id AT5G45973.1  protein_id AT5G45973.1p  transcript_id AT5G45973.1  
At5g45980	chr5:018648921	0.0	W/18648921-18649059,18649209-18649808,18650382-18650614,18650693-18650698	AT5G45980.1  CDS  gene_syn MCL19.2, MCL19_2, STIMPY-LIKE, STPL, WOX8, WUSCHEL RELATED HOMEOBOX 8  gene WOX8  function Arabidopsis thaliana WOX8 protein. Contains similarity to homeodomain transcription factor. Positively regulates early embryonic growth.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process positive regulation of cell proliferation|GO:0008284|17706632|IGI  go_process embryonic development ending in seed dormancy|GO:0009793|17706632|IGI  go_process embryonic development ending in seed dormancy|GO:0009793|17706632|IMP  go_process cotyledon development|GO:0048825|17706632|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product WOX8 (WUSCHEL RELATED HOMEOBOX 8); DNA binding / transcription factor  note WUSCHEL RELATED HOMEOBOX 8 (WOX8); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: embryonic development ending in seed dormancy, positive regulation of cell proliferation, cotyledon development, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: C globular stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: HB-3; transcription factor (TAIR:AT2G33880.1); Has 318 Blast hits to 300 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 318; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G45980.1p  transcript_id AT5G45980.1  protein_id AT5G45980.1p  transcript_id AT5G45980.1  
At5g45990	chr5:018651324	0.0	W/18651324-18652444,18652530-18652595,18652679-18652823,18652924-18653142,18653233-18653395,18653506-18653701,18653781-18653892	AT5G45990.1  CDS  gene_syn MCL19.3, MCL19_3  go_component intracellular|GO:0005622||IEA  go_process RNA processing|GO:0006396||IEA  go_function binding|GO:0005488||IEA  go_component intracellular|GO:0005622||ISS  go_process RNA processing|GO:0006396||ISS  product crooked neck protein, putative / cell cycle protein, putative  note crooked neck protein, putative / cell cycle protein, putative; FUNCTIONS IN: binding; INVOLVED IN: RNA processing; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: crooked neck protein, putative / cell cycle protein, putative (TAIR:AT5G41770.1); Has 3943 Blast hits to 1642 proteins in 191 species: Archae - 15; Bacteria - 34; Metazoa - 1807; Fungi - 1089; Plants - 496; Viruses - 0; Other Eukaryotes - 502 (source: NCBI BLink).  protein_id AT5G45990.1p  transcript_id AT5G45990.1  protein_id AT5G45990.1p  transcript_id AT5G45990.1  
At5g46000	chr5:018656170	0.0	C/18656170-18656376,18655953-18656060,18655593-18655728,18655299-18655454,18654853-18655133,18654319-18654621	AT5G46000.1  CDS  gene_syn MCL19.4, MCL19_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product jacalin lectin family protein  note jacalin lectin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: JAL23 (JACALIN-RELATED LECTIN 23) (TAIR:AT2G39330.1); Has 586 Blast hits to 235 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 586; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G46000.1p  transcript_id AT5G46000.1  protein_id AT5G46000.1p  transcript_id AT5G46000.1  
At5g46010	chr5:018660584	0.0	W/18660584-18660722,18660954-18661183	AT5G46010.1  CDS  gene_syn MCL19.5, MCL19_5  go_component vacuole|GO:0005773|15539469|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product homeobox-leucine zipper transcription factor family protein  note homeobox-leucine zipper transcription factor family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356); BEST Arabidopsis thaliana protein match is: WOX8 (WUSCHEL RELATED HOMEOBOX 8); DNA binding / transcription factor (TAIR:AT5G45980.1); Has 267 Blast hits to 267 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 267; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G46010.1p  transcript_id AT5G46010.1  protein_id AT5G46010.1p  transcript_id AT5G46010.1  
At5g46013	chr5:018661760	0.0	C/18661760-18661909	AT5G46013.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G46013.1p  transcript_id AT5G46013.1  protein_id AT5G46013.1p  transcript_id AT5G46013.1  
At5g46020	chr5:018664563	0.0	C/18664563-18664629,18664025-18664065,18663863-18663940,18663693-18663779,18663559-18663593,18663371-18663456,18663213-18663278,18663075-18663109	AT5G46020.1  CDS  gene_syn MCL19.6, MCL19_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 13940 Blast hits to 6570 proteins in 620 species: Archae - 22; Bacteria - 1473; Metazoa - 5121; Fungi - 1286; Plants - 303; Viruses - 130; Other Eukaryotes - 5605 (source: NCBI BLink).  protein_id AT5G46020.1p  transcript_id AT5G46020.1  protein_id AT5G46020.1p  transcript_id AT5G46020.1  
At5g46025	chr5:018665255	0.0	C/18665255-18665596	AT5G46025.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product Ras-related GTP-binding family protein  note Ras-related GTP-binding family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: small GTPase mediated signal transduction; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Ras (InterPro:IPR013753); BEST Arabidopsis thaliana protein match is: AtRABA1e (Arabidopsis Rab GTPase homolog A1e); GTP binding (TAIR:AT4G18430.1); Has 13611 Blast hits to 13599 proteins in 411 species: Archae - 2; Bacteria - 0; Metazoa - 7612; Fungi - 1360; Plants - 1309; Viruses - 19; Other Eukaryotes - 3309 (source: NCBI BLink).  protein_id AT5G46025.1p  transcript_id AT5G46025.1  protein_id AT5G46025.1p  transcript_id AT5G46025.1  
At5g46030	chr5:018670531	0.0	W/18670531-18670643,18670718-18670788,18670876-18670897,18670982-18671138	AT5G46030.1  CDS  gene_syn MCL19.8, MCL19_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF701, zinc-binding putative (InterPro:IPR007808); Has 2456 Blast hits to 1418 proteins in 196 species: Archae - 2; Bacteria - 26; Metazoa - 1582; Fungi - 186; Plants - 111; Viruses - 40; Other Eukaryotes - 509 (source: NCBI BLink).  protein_id AT5G46030.1p  transcript_id AT5G46030.1  protein_id AT5G46030.1p  transcript_id AT5G46030.1  
At5g46040	chr5:018673437	0.0	C/18673437-18673551,18673121-18673338,18672361-18672926,18671397-18672258	AT5G46040.1  CDS  gene_syn MCL19.9, MCL19_9  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_process response to nematode|GO:0009624|16478044|IEP  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport, response to nematode; LOCATED IN: membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region, conserved site (InterPro:IPR018456), TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: PTR3 (PEPTIDE TRANSPORTER 3); dipeptide transporter/ transporter/ tripeptide transporter (TAIR:AT5G46050.1); Has 4571 Blast hits to 4344 proteins in 789 species: Archae - 0; Bacteria - 2009; Metazoa - 631; Fungi - 275; Plants - 1123; Viruses - 0; Other Eukaryotes - 533 (source: NCBI BLink).  protein_id AT5G46040.1p  transcript_id AT5G46040.1  protein_id AT5G46040.1p  transcript_id AT5G46040.1  
At5g46050	chr5:018678957	0.0	C/18678957-18679071,18678116-18678333,18676095-18676660,18675603-18676001,18675062-18675512	AT5G46050.1  CDS  gene_syn ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, ATPTR3, MCL19.10, MCL19_10, PEPTIDE TRANSPORTER 3, PTR3  gene PTR3  function Encodes a di- and tri-peptide transporter involved in responses to wounding, virulent bacterial pathogens, and high NaCl concentrations. The protein is predicted to have 12 transmembrane helicies.  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_process response to wounding|GO:0009611|15889294|IEP  go_process response to abscisic acid stimulus|GO:0009737|17143616|IEP  go_process response to salicylic acid stimulus|GO:0009751|17143616|IEP  go_process response to jasmonic acid stimulus|GO:0009753|17143616|IEP  go_process hyperosmotic salinity response|GO:0042538|15889294|IMP  go_process defense response to bacterium|GO:0042742|17143616|IMP  go_process dipeptide transport|GO:0042938|17143616|IGI  go_process tripeptide transport|GO:0042939|17143616|IGI  go_process response to leucine|GO:0043201|15889294|IEP  go_process response to histidine|GO:0080052|15889294|IEP  go_process response to phenylalanine|GO:0080053|15889294|IEP  go_function transporter activity|GO:0005215||ISS  go_function dipeptide transporter activity|GO:0042936|17143616|IGI  go_function tripeptide transporter activity|GO:0042937|17143616|IGI  product PTR3 (PEPTIDE TRANSPORTER 3); dipeptide transporter/ transporter/ tripeptide transporter  note PEPTIDE TRANSPORTER 3 (PTR3); FUNCTIONS IN: dipeptide transporter activity, tripeptide transporter activity, transporter activity; INVOLVED IN: in 12 processes; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region, conserved site (InterPro:IPR018456), TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT5G46040.1); Has 4396 Blast hits to 4188 proteins in 759 species: Archae - 0; Bacteria - 1922; Metazoa - 603; Fungi - 279; Plants - 1123; Viruses - 0; Other Eukaryotes - 469 (source: NCBI BLink).  protein_id AT5G46050.1p  transcript_id AT5G46050.1  protein_id AT5G46050.1p  transcript_id AT5G46050.1  
At5g46060	chr5:018681533	0.0	W/18681533-18681706,18681887-18682459	AT5G46060.1  CDS  gene_syn MCL19.11, MCL19_11  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF599 (InterPro:IPR006747); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24600.1); Has 143 Blast hits to 143 proteins in 32 species: Archae - 0; Bacteria - 38; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G46060.1p  transcript_id AT5G46060.1  protein_id AT5G46060.1p  transcript_id AT5G46060.1  
At5g46070	chr5:018683468	0.0	W/18683468-18683734,18684023-18684184,18684286-18684351,18684448-18684591,18684666-18684779,18684927-18685028,18685113-18685298,18685511-18685600,18685687-18685821,18685958-18686080,18686178-18686263,18686369-18686981,18687067-18687144,18687315-18688397	AT5G46070.1  CDS  gene_syn MCL19.12, MCL19_12  go_component nucleolus|GO:0005730|15496452|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_process immune response|GO:0006955||ISS  go_function GTPase activity|GO:0003924||ISS  go_function GTP binding|GO:0005525||ISS  product GTP binding / GTPase  note GTP binding / GTPase; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: immune response; LOCATED IN: nucleolus, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Guanylate-binding protein, N-terminal (InterPro:IPR015894), Guanylate-binding protein-like, C-terminal (InterPro:IPR015900), Guanylate-binding protein, C-terminal (InterPro:IPR003191); BEST Arabidopsis thaliana protein match is: guanylate-binding family protein (TAIR:AT1G03830.1); Has 106022 Blast hits to 56971 proteins in 2172 species: Archae - 1070; Bacteria - 15944; Metazoa - 51262; Fungi - 8184; Plants - 4097; Viruses - 457; Other Eukaryotes - 25008 (source: NCBI BLink).  protein_id AT5G46070.1p  transcript_id AT5G46070.1  protein_id AT5G46070.1p  transcript_id AT5G46070.1  
At5g46080	chr5:018689723	0.0	C/18689723-18690721	AT5G46080.1  CDS  gene_syn MCL19.13, MCL19_13  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ACR4 (ARABIDOPSIS CRINKLY4); kinase/ transmembrane receptor protein kinase (TAIR:AT3G59420.1); Has 32410 Blast hits to 32161 proteins in 1051 species: Archae - 4; Bacteria - 1946; Metazoa - 12618; Fungi - 1611; Plants - 12996; Viruses - 108; Other Eukaryotes - 3127 (source: NCBI BLink).  protein_id AT5G46080.1p  transcript_id AT5G46080.1  protein_id AT5G46080.1p  transcript_id AT5G46080.1  
At5g46090	chr5:018693485	0.0	W/18693485-18694129	AT5G46090.1  CDS  gene_syn MCL19.14, MCL19_14  go_component chloroplast|GO:0009507|15028209|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF679 (InterPro:IPR007770); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G18425.1); Has 153 Blast hits to 146 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G46090.1p  transcript_id AT5G46090.1  protein_id AT5G46090.1p  transcript_id AT5G46090.1  
At5g46100	chr5:018694316	0.0	C/18694316-18695734	AT5G46100.1  CDS  gene_syn MCL19.15, MCL19_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: EMB1025 (embryo defective 1025) (TAIR:AT4G20090.1); Has 19948 Blast hits to 5839 proteins in 183 species: Archae - 5; Bacteria - 16; Metazoa - 543; Fungi - 369; Plants - 18243; Viruses - 0; Other Eukaryotes - 772 (source: NCBI BLink).  protein_id AT5G46100.1p  transcript_id AT5G46100.1  protein_id AT5G46100.1p  transcript_id AT5G46100.1  
At5g46110	chr5:018697606	0.0	W/18697606-18697883,18697958-18698023,18698149-18698214,18698510-18698588,18698812-18698932,18699018-18699113,18699188-18699300,18699385-18699429,18699562-18699678,18699764-18699863,18699959-18700059,18700195-18700212	AT5G46110.3  CDS  gene_syn ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, APE2, TPT  gene APE2  function mutant has Altered acclimation responses; Chloroplast Triose Phosphate Translocator  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process transport|GO:0006810||IEA  go_process triose phosphate transport|GO:0015717||ISS  go_function triose-phosphate transmembrane transporter activity|GO:0009670||ISS  go_function antiporter activity|GO:0015297||ISS  product APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2); antiporter/ triose-phosphate transmembrane transporter  note ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2 (APE2); FUNCTIONS IN: antiporter activity, triose-phosphate transmembrane transporter activity; INVOLVED IN: triose phosphate transport, transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tpt phosphate/phosphoenolpyruvate translocator (InterPro:IPR004696), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: GPT1; antiporter/ glucose-6-phosphate transmembrane transporter (TAIR:AT5G54800.1); Has 1472 Blast hits to 1471 proteins in 216 species: Archae - 0; Bacteria - 48; Metazoa - 368; Fungi - 254; Plants - 645; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).  protein_id AT5G46110.3p  transcript_id AT5G46110.3  protein_id AT5G46110.3p  transcript_id AT5G46110.3  
At5g46110	chr5:018697606	0.0	W/18697606-18697883,18697958-18698023,18698149-18698214,18698510-18698588,18698812-18698932,18699018-18699113,18699188-18699300,18699385-18699462,18699562-18699678,18699764-18699863,18699959-18700059,18700195-18700212	AT5G46110.1  CDS  gene_syn ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, APE2, TPT  gene APE2  function mutant has Altered acclimation responses; Chloroplast Triose Phosphate Translocator  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process transport|GO:0006810||IEA  go_process triose phosphate transport|GO:0015717||ISS  go_function triose-phosphate transmembrane transporter activity|GO:0009670||ISS  go_function antiporter activity|GO:0015297||ISS  product APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2); antiporter/ triose-phosphate transmembrane transporter  note ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2 (APE2); FUNCTIONS IN: antiporter activity, triose-phosphate transmembrane transporter activity; INVOLVED IN: triose phosphate transport, transport; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tpt phosphate/phosphoenolpyruvate translocator (InterPro:IPR004696), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: GPT1; antiporter/ glucose-6-phosphate transmembrane transporter (TAIR:AT5G54800.1); Has 1664 Blast hits to 1663 proteins in 279 species: Archae - 2; Bacteria - 163; Metazoa - 415; Fungi - 267; Plants - 638; Viruses - 0; Other Eukaryotes - 179 (source: NCBI BLink).  protein_id AT5G46110.1p  transcript_id AT5G46110.1  protein_id AT5G46110.1p  transcript_id AT5G46110.1  
At5g46110	chr5:018697606	0.0	W/18697606-18697883,18697958-18698023,18698149-18698214,18698510-18698588,18698812-18698932,18699018-18699113,18699188-18699300,18699385-18699462,18699562-18699678,18699764-18699863,18699959-18700063,18700195-18700223	AT5G46110.4  CDS  gene_syn ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, APE2, TPT  gene APE2  function mutant has Altered acclimation responses; Chloroplast Triose Phosphate Translocator  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process transport|GO:0006810||IEA  go_process triose phosphate transport|GO:0015717||ISS  go_function triose-phosphate transmembrane transporter activity|GO:0009670||ISS  go_function antiporter activity|GO:0015297||ISS  product APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2); antiporter/ triose-phosphate transmembrane transporter  note ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2 (APE2); FUNCTIONS IN: antiporter activity, triose-phosphate transmembrane transporter activity; INVOLVED IN: triose phosphate transport, transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tpt phosphate/phosphoenolpyruvate translocator (InterPro:IPR004696), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: GPT1; antiporter/ glucose-6-phosphate transmembrane transporter (TAIR:AT5G54800.1); Has 1678 Blast hits to 1677 proteins in 279 species: Archae - 2; Bacteria - 163; Metazoa - 415; Fungi - 271; Plants - 647; Viruses - 0; Other Eukaryotes - 180 (source: NCBI BLink).  protein_id AT5G46110.4p  transcript_id AT5G46110.4  protein_id AT5G46110.4p  transcript_id AT5G46110.4  
At5g46110	chr5:018698019	0.0	W/18698019-18698023,18698149-18698214,18698510-18698588,18698812-18698932,18699018-18699113,18699188-18699300,18699385-18699462,18699562-18699678,18699764-18699863,18699959-18700059,18700195-18700212	AT5G46110.2  CDS  gene_syn ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, APE2, TPT  gene APE2  function mutant has Altered acclimation responses; Chloroplast Triose Phosphate Translocator  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process transport|GO:0006810||IEA  go_process triose phosphate transport|GO:0015717||ISS  go_function triose-phosphate transmembrane transporter activity|GO:0009670||ISS  go_function antiporter activity|GO:0015297||ISS  product APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2); antiporter/ triose-phosphate transmembrane transporter  note ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2 (APE2); FUNCTIONS IN: antiporter activity, triose-phosphate transmembrane transporter activity; INVOLVED IN: triose phosphate transport, transport; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853), Tpt phosphate/phosphoenolpyruvate translocator (InterPro:IPR004696); BEST Arabidopsis thaliana protein match is: GPT1; antiporter/ glucose-6-phosphate transmembrane transporter (TAIR:AT5G54800.1); Has 1633 Blast hits to 1632 proteins in 276 species: Archae - 0; Bacteria - 159; Metazoa - 407; Fungi - 263; Plants - 629; Viruses - 0; Other Eukaryotes - 175 (source: NCBI BLink).  protein_id AT5G46110.2p  transcript_id AT5G46110.2  protein_id AT5G46110.2p  transcript_id AT5G46110.2  
At5g46105	chr5:018698662	0.0	C/18698662-18698733	AT5G46105.1  tRNA  gene_syn 67794.TRNA-PRO-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT5G46105.1  
At5g46115	chr5:018701485	0.0	W/18701485-18701709	AT5G46115.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G46115.1p  transcript_id AT5G46115.1  protein_id AT5G46115.1p  transcript_id AT5G46115.1  
At5g46120	chr5:018702624	0.0	C/18702624-18702875	AT5G46120.1  mRNA_TE_gene  pseudo  gene_syn MCL19.18, MCL19_18  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05145.1); similar to hypothetical protein 23.t00046 [Brassica oleracea] (GB:ABD65629.1); contains domain REVERSE TRANSCRIPTASES (PTHR19446); contains domain gb def: Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCL19 (PTHR19446:SF30)  
At5g46130	chr5:018704337	0.0	C/18704337-18704390,18703484-18704223,18703058-18703394	AT5G46130.1  CDS  gene_syn MCL19.19, MCL19_19  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46140.1); Has 140 Blast hits to 138 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 140; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G46130.1p  transcript_id AT5G46130.1  protein_id AT5G46130.1p  transcript_id AT5G46130.1  
At5g46140	chr5:018705563	0.0	C/18705563-18706077,18705111-18705465	AT5G46140.1  CDS  gene_syn MCL19.20, MCL19_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46130.1); Has 169 Blast hits to 167 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 169; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G46140.1p  transcript_id AT5G46140.1  protein_id AT5G46140.1p  transcript_id AT5G46140.1  
At5g46150	chr5:018710352	0.0	C/18710352-18710424,18710120-18710181,18709959-18710033,18709768-18709884,18709604-18709674,18709219-18709516,18708851-18709140,18708735-18708780	AT5G46150.1  CDS  gene_syn MCL19.21, MCL19_21  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein  note LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF284, transmembrane eukaryotic (InterPro:IPR005045); BEST Arabidopsis thaliana protein match is: ALIS1 (ALA-INTERACTING SUBUNIT 1); phospholipid transporter (TAIR:AT3G12740.1); Has 638 Blast hits to 638 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 217; Fungi - 139; Plants - 105; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).  protein_id AT5G46150.1p  transcript_id AT5G46150.1  protein_id AT5G46150.1p  transcript_id AT5G46150.1  
At5g46150	chr5:018710352	0.0	C/18710352-18710424,18710120-18710181,18709959-18710033,18709768-18709884,18709604-18709674,18709219-18709516,18708851-18709140,18708735-18708780	AT5G46150.2  CDS  gene_syn MCL19.21, MCL19_21  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein  note LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF284, transmembrane eukaryotic (InterPro:IPR005045); BEST Arabidopsis thaliana protein match is: ALIS1 (ALA-INTERACTING SUBUNIT 1); phospholipid transporter (TAIR:AT3G12740.1); Has 638 Blast hits to 638 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 217; Fungi - 139; Plants - 105; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).  protein_id AT5G46150.2p  transcript_id AT5G46150.2  protein_id AT5G46150.2p  transcript_id AT5G46150.2  
At5g46160	chr5:018712308	0.0	C/18712308-18712341,18711942-18712027,18711456-18711854	AT5G46160.2  CDS  gene_syn MCL19.22, MCL19_22  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_component large ribosomal subunit|GO:0015934||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L14 family protein / huellenlos paralog (HLP)  note ribosomal protein L14 family protein / huellenlos paralog (HLP); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L14, bacterial-type (InterPro:IPR005745), Ribosomal protein L14b/L23e (InterPro:IPR000218); BEST Arabidopsis thaliana protein match is: HLL (HUELLENLOS); structural constituent of ribosome (TAIR:AT1G17560.1); Has 6519 Blast hits to 6519 proteins in 1853 species: Archae - 229; Bacteria - 3002; Metazoa - 237; Fungi - 191; Plants - 550; Viruses - 0; Other Eukaryotes - 2310 (source: NCBI BLink).  protein_id AT5G46160.2p  transcript_id AT5G46160.2  protein_id AT5G46160.2p  transcript_id AT5G46160.2  
At5g46160	chr5:018712308	0.0	C/18712308-18712341,18711942-18712027,18711456-18711857	AT5G46160.1  CDS  gene_syn MCL19.22, MCL19_22  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_component large ribosomal subunit|GO:0015934||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L14 family protein / huellenlos paralog (HLP)  note ribosomal protein L14 family protein / huellenlos paralog (HLP); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L14, bacterial-type (InterPro:IPR005745), Ribosomal protein L14b/L23e (InterPro:IPR000218); BEST Arabidopsis thaliana protein match is: HLL (HUELLENLOS); structural constituent of ribosome (TAIR:AT1G17560.1); Has 6516 Blast hits to 6516 proteins in 1853 species: Archae - 229; Bacteria - 3002; Metazoa - 234; Fungi - 191; Plants - 550; Viruses - 0; Other Eukaryotes - 2310 (source: NCBI BLink).  protein_id AT5G46160.1p  transcript_id AT5G46160.1  protein_id AT5G46160.1p  transcript_id AT5G46160.1  
At5g46170	chr5:018715638	0.0	C/18715638-18716825	AT5G46170.1  CDS  gene_syn MCL19.23, MCL19_23  go_component cellular_component|GO:0005575||ND  go_process heat acclimation|GO:0010286|16807682|IEP  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: heat acclimation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G18380.1); Has 87 Blast hits to 86 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G46170.1p  transcript_id AT5G46170.1  protein_id AT5G46170.1p  transcript_id AT5G46170.1  
At5g46180	chr5:018721111	0.0	C/18721111-18721271,18720653-18720761,18720309-18720539,18720072-18720231,18719915-18719970,18719681-18719833,18719493-18719590,18719316-18719396,18719005-18719238,18718766-18718910	AT5G46180.1  CDS  gene_syn DELTA-OAT, MCL19.24, MCL19_24, ORNITHINE-DELTA-AMINOTRANSFERASE  gene DELTA-OAT  function ornithine delta-aminotransferase  go_component mitochondrion|GO:0005739||IEA  go_process proline biosynthetic process|GO:0006561|9576796|IDA  go_process hyperosmotic salinity response|GO:0042538|9576796|IDA  go_function ornithine-oxo-acid transaminase activity|GO:0004587|9576796|ISS  go_function ornithine-oxo-acid transaminase activity|GO:0004587||ISS  product delta-OAT; ornithine-oxo-acid transaminase  note delta-OAT; FUNCTIONS IN: ornithine-oxo-acid transaminase activity; INVOLVED IN: hyperosmotic salinity response, proline biosynthetic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Ornithine aminotransferase (InterPro:IPR010164), Aminotransferase class-III (InterPro:IPR005814), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: WIN1 (HOPW1-1-INTERACTING 1); N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase/ catalytic/ pyridoxal phosphate binding / transaminase (TAIR:AT1G80600.1); Has 24421 Blast hits to 24412 proteins in 1635 species: Archae - 420; Bacteria - 12587; Metazoa - 562; Fungi - 576; Plants - 233; Viruses - 12; Other Eukaryotes - 10031 (source: NCBI BLink).  protein_id AT5G46180.1p  transcript_id AT5G46180.1  protein_id AT5G46180.1p  transcript_id AT5G46180.1  
At5g46190	chr5:018725217	0.0	C/18725217-18725834,18724395-18725132,18724010-18724303,18723879-18723934,18723702-18723798,18723435-18723566	AT5G46190.1  CDS  gene_syn MCL19.25, MCL19_25  go_function RNA binding|GO:0003723||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product KH domain-containing protein  note KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT4G18375.2); Has 4169 Blast hits to 2193 proteins in 151 species: Archae - 0; Bacteria - 6; Metazoa - 3062; Fungi - 388; Plants - 523; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink).  protein_id AT5G46190.1p  transcript_id AT5G46190.1  protein_id AT5G46190.1p  transcript_id AT5G46190.1  
At5g46195	chr5:018726804	0.0	W/18726804-18727439	AT5G46195.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 8.8e-38 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At5g46200	chr5:018730176	0.0	C/18730176-18730247,18730011-18730094,18729752-18729923,18729252-18729409,18728983-18729150,18728827-18728880,18728576-18728722,18728050-18728421	AT5G46200.1  CDS  gene_syn MDE13.2, MDE13_2  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17860.1); Has 383 Blast hits to 359 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 10; Plants - 373; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G46200.1p  transcript_id AT5G46200.1  protein_id AT5G46200.1p  transcript_id AT5G46200.1  
At5g46210	chr5:018736407	0.0	C/18736407-18736653,18735811-18735926,18735379-18735725,18734921-18735101,18734708-18734830,18734332-18734619,18733837-18733962,18733597-18733698,18733442-18733495,18733087-18733193,18732930-18732990,18732705-18732836,18732469-18732606,18732272-18732352,18732080-18732160,18731874-18731954,18731569-18731682	AT5G46210.1  CDS  gene_syn CUL4, CULLIN4, MDE13.3, MDE13_3  gene CUL4  function Arabidopsis CULLIN4 (CUL4) forms an E3 ubiquitin ligase with the CDD complex and a common catalytic subunit RBX1 in mediating light control of development. This CUL4-based E3 ligase is essential for the repression of photomorphogenesis. The partial loss of CUL4 function resulted in a constitutive photomorphogenic phenotype with respect to morphogenesis and light-regulated gene expression. CUL4 exhibits a synergistic genetic interaction with COP10 and DET1.  go_component ubiquitin ligase complex|GO:0000151|16844902|IPI  go_component nucleus|GO:0005634|16844902|IDA  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|16792691|IPI  go_process protein polyubiquitination|GO:0000209|16844902|IDA  go_process DNA repair|GO:0006281|18434413|IMP  go_process cell cycle|GO:0007049||ISS  go_process photomorphogenesis|GO:0009640|16792691|IMP  go_process hormone-mediated signaling|GO:0009755|18223036|IMP  go_process flower development|GO:0009908|16844902|IMP  go_process negative regulation of photomorphogenesis|GO:0010100|16844902|IMP  go_process fruit development|GO:0010154|18223036|IMP  go_process sugar mediated signaling|GO:0010182|18223036|IMP  go_process leaf development|GO:0048366|16792691|IMP  go_process leaf development|GO:0048366|18223036|IMP  go_process shoot development|GO:0048367|16844902|IMP  go_process cotyledon development|GO:0048825|18223036|IMP  go_function ubiquitin-protein ligase activity|GO:0004842|16844902|IC  go_function protein binding|GO:0005515|16844902|IPI  product CUL4 (CULLIN4); protein binding / ubiquitin-protein ligase  note CULLIN4 (CUL4); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: in 12 processes; LOCATED IN: ubiquitin ligase complex, nucleus, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Cullin homology (InterPro:IPR016158), Cullin, N-terminal region (InterPro:IPR001373), Cullin, conserved site (InterPro:IPR016157), Cullin repeat-like (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: CUL3B (CULLIN 3B); protein binding / ubiquitin-protein ligase (TAIR:AT1G69670.1); Has 1673 Blast hits to 1646 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 819; Fungi - 324; Plants - 188; Viruses - 3; Other Eukaryotes - 339 (source: NCBI BLink).  protein_id AT5G46210.1p  transcript_id AT5G46210.1  protein_id AT5G46210.1p  transcript_id AT5G46210.1  
At5g46220	chr5:018738827	0.0	W/18738827-18739085,18739400-18739600,18739917-18740480,18741600-18741964	AT5G46220.1  CDS  gene_syn MDE13.4, MDE13_4  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF616 (InterPro:IPR006852); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28240.1); Has 123 Blast hits to 123 proteins in 12 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT5G46220.1p  transcript_id AT5G46220.1  protein_id AT5G46220.1p  transcript_id AT5G46220.1  
At5g46230	chr5:018742593	0.0	C/18742593-18743024	AT5G46230.1  CDS  gene_syn MPL12.1, MPL12_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09310.1); Has 176 Blast hits to 174 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 176; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G46230.1p  transcript_id AT5G46230.1  protein_id AT5G46230.1p  transcript_id AT5G46230.1  
At5g46240	chr5:018746383	0.0	C/18746383-18746561,18746012-18746227,18745772-18745927,18745619-18745676,18745147-18745464,18744751-18744990,18744570-18744668,18744276-18744494,18743652-18744200	AT5G46240.1  CDS  gene_syn KAT1, MPL12.2, MPL12_2, POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 1  gene KAT1  function Encodes a potassium channel protein (KAT1). ABA triggers KAT1 endocytosis both in epidermal cells as well as guard cells. Upon removal of ABA, KAT1 is recycled back to the plasma membrane. KAT1 is localized within 0.5 0.6 & 956;m diameter microdomains at the plasma membrane surface.  go_component plasma membrane|GO:0005886|16531497|IDA  go_component plasma membrane|GO:0005886|17683934|IDA  go_component plasma membrane|GO:0005886|9368418|IDA  go_component plasma membrane|GO:0005886|9707551|IDA  go_process potassium ion transport|GO:0006813|1570292|IGI  go_function inward rectifier potassium channel activity|GO:0005242|8966547|IDA  go_function inward rectifier potassium channel activity|GO:0005242||ISS  go_function cyclic nucleotide binding|GO:0030551||ISS  product KAT1 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 1); cyclic nucleotide binding / inward rectifier potassium channel  note POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 1 (KAT1); FUNCTIONS IN: cyclic nucleotide binding, inward rectifier potassium channel activity; INVOLVED IN: potassium ion transport; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Ion transport (InterPro:IPR005821), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: KAT2 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 2); cyclic nucleotide binding / inward rectifier potassium channel (TAIR:AT4G18290.1); Has 3798 Blast hits to 3579 proteins in 214 species: Archae - 9; Bacteria - 150; Metazoa - 1502; Fungi - 14; Plants - 555; Viruses - 0; Other Eukaryotes - 1568 (source: NCBI BLink).  protein_id AT5G46240.1p  transcript_id AT5G46240.1  protein_id AT5G46240.1p  transcript_id AT5G46240.1  
At5g46250	chr5:018755388	0.0	W/18755388-18755717,18755953-18756034,18756416-18756510,18756590-18756655,18756758-18756837,18756933-18757017,18757111-18757158,18757247-18757315,18757401-18757556,18757698-18757791,18757893-18758056	AT5G46250.1  CDS  gene_syn MPL12.3, MPL12_3  go_component nucleus|GO:0005634||IEA  go_component ribonucleoprotein complex|GO:0030529||IEA  go_process RNA processing|GO:0006396||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: ribonucleoprotein complex, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Lupus La protein (InterPro:IPR002344), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein, putative (TAIR:AT3G19090.1); Has 1225 Blast hits to 1223 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 762; Fungi - 166; Plants - 180; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT5G46250.1p  transcript_id AT5G46250.1  protein_id AT5G46250.1p  transcript_id AT5G46250.1  
At5g46250	chr5:018755388	0.0	W/18755388-18755717,18755953-18756034,18756416-18756510,18756590-18756655,18756758-18756837,18756933-18757017,18757111-18757158,18757247-18757315,18757401-18757560,18757716-18757723	AT5G46250.2  CDS  gene_syn MPL12.3, MPL12_3  go_component nucleus|GO:0005634||IEA  go_component ribonucleoprotein complex|GO:0030529||IEA  go_process RNA processing|GO:0006396||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: ribonucleoprotein complex, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Lupus La protein (InterPro:IPR002344), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein, putative (TAIR:AT3G19090.1); Has 1157 Blast hits to 1155 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 727; Fungi - 162; Plants - 164; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT5G46250.2p  transcript_id AT5G46250.2  protein_id AT5G46250.2p  transcript_id AT5G46250.2  
At5g46250	chr5:018755388	0.0	W/18755388-18755717,18755953-18756034,18756416-18756510,18756590-18756655,18756758-18756837,18756933-18757017,18757111-18757162,18757251-18757315,18757401-18757560,18757716-18757723	AT5G46250.3  CDS  gene_syn MPL12.3, MPL12_3  go_component nucleus|GO:0005634||IEA  go_component ribonucleoprotein complex|GO:0030529||IEA  go_process RNA processing|GO:0006396||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: ribonucleoprotein complex, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Lupus La protein (InterPro:IPR002344), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: La domain-containing protein (TAIR:AT2G43970.1); Has 1278 Blast hits to 1276 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 819; Fungi - 181; Plants - 174; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT5G46250.3p  transcript_id AT5G46250.3  protein_id AT5G46250.3p  transcript_id AT5G46250.3  
At5g46260	chr5:018762901	0.0	C/18762901-18763358,18761695-18762811,18761267-18761566,18760744-18761157,18759351-18760532,18759102-18759248	AT5G46260.1  CDS  gene_syn MPL12.4, MPL12_4  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor (TAIR:AT5G46270.1); Has 14881 Blast hits to 10421 proteins in 470 species: Archae - 12; Bacteria - 695; Metazoa - 1124; Fungi - 73; Plants - 12380; Viruses - 20; Other Eukaryotes - 577 (source: NCBI BLink).  protein_id AT5G46260.1p  transcript_id AT5G46260.1  protein_id AT5G46260.1p  transcript_id AT5G46260.1  
At5g46270	chr5:018769079	0.0	C/18769079-18769090,18768384-18768862,18767184-18768297,18766756-18767055,18766269-18766670,18764932-18766035,18764833-18764841	AT5G46270.1  CDS  gene_syn MPL12.5, MPL12_5  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor  note ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor; FUNCTIONS IN: protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat 3 (InterPro:IPR011713), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G46260.1); Has 13898 Blast hits to 9849 proteins in 403 species: Archae - 10; Bacteria - 555; Metazoa - 892; Fungi - 29; Plants - 11800; Viruses - 15; Other Eukaryotes - 597 (source: NCBI BLink).  protein_id AT5G46270.1p  transcript_id AT5G46270.1  protein_id AT5G46270.1p  transcript_id AT5G46270.1  
At5g46280	chr5:018773544	0.0	C/18773544-18773606,18773348-18773448,18772951-18773159,18772721-18772851,18772390-18772628,18772079-18772315,18771823-18771977,18771501-18771709,18771257-18771416,18770974-18771170,18770831-18770890,18770654-18770743,18770359-18770561,18770049-18770268,18769902-18769958	AT5G46280.1  CDS  gene_syn MPL12.6, MPL12_6  go_component nucleus|GO:0005634||IEA  go_process DNA replication|GO:0006260||IEA  go_process DNA replication initiation|GO:0006270||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function DNA binding|GO:0003677||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process DNA replication initiation|GO:0006270||ISS  go_function DNA binding|GO:0003677||ISS  go_function ATP binding|GO:0005524||ISS  go_function DNA-dependent ATPase activity|GO:0008094||ISS  product DNA replication licensing factor, putative  note DNA replication licensing factor, putative; FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: DNA replication initiation, DNA replication; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 3 (InterPro:IPR008046); BEST Arabidopsis thaliana protein match is: PRL (PROLIFERA); ATP binding / DNA binding / DNA-dependent ATPase/ nucleoside-triphosphatase/ nucleotide binding (TAIR:AT4G02060.1); Has 3051 Blast hits to 2962 proteins in 393 species: Archae - 239; Bacteria - 212; Metazoa - 971; Fungi - 565; Plants - 257; Viruses - 3; Other Eukaryotes - 804 (source: NCBI BLink).  protein_id AT5G46280.1p  transcript_id AT5G46280.1  protein_id AT5G46280.1p  transcript_id AT5G46280.1  
At5g46290	chr5:018776165	0.0	C/18776165-18776629,18775642-18776073,18775199-18775372,18774976-18775089,18774775-18774876,18774589-18774655,18774439-18774506	AT5G46290.1  CDS  gene_syn 3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I, KAS I, MPL12.7, MPL12_7  gene KAS I  function 3-ketoacyl-acyl carrier protein synthase I (KAS I) mRNA,  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process fatty acid biosynthetic process|GO:0006633||IEA  go_process metabolic process|GO:0008152||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function catalytic activity|GO:0003824||IEA  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_function fatty-acid synthase activity|GO:0004312||ISS  product KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I); catalytic/ fatty-acid synthase/ transferase, transferring acyl groups other than amino-acyl groups  note 3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I (KAS I); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, fatty-acid synthase activity, catalytic activity; INVOLVED IN: biosynthetic process, metabolic process, fatty acid biosynthetic process; LOCATED IN: chloroplast, chloroplast stroma, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta-ketoacyl synthase (InterPro:IPR000794), Beta-ketoacyl synthase, C-terminal (InterPro:IPR014031), 3-oxoacyl-[acyl-carrier-protein] synthase 2 (InterPro:IPR017568), Beta-ketoacyl synthase, N-terminal (InterPro:IPR014030), Thiolase-like, subgroup (InterPro:IPR016038), Beta-ketoacyl synthase, active site (InterPro:IPR018201), Thiolase-like (InterPro:IPR016039); BEST Arabidopsis thaliana protein match is: FAB1 (FATTY ACID BIOSYNTHESIS 1); 3-oxoacyl-[acyl-carrier-protein] synthase/ fatty-acid synthase (TAIR:AT1G74960.2); Has 19689 Blast hits to 18016 proteins in 2048 species: Archae - 3; Bacteria - 11787; Metazoa - 445; Fungi - 1536; Plants - 229; Viruses - 0; Other Eukaryotes - 5689 (source: NCBI BLink).  protein_id AT5G46290.1p  transcript_id AT5G46290.1  protein_id AT5G46290.1p  transcript_id AT5G46290.1  
At5g46290	chr5:018776165	0.0	C/18776165-18776629,18775948-18776073,18775642-18775782,18775199-18775372,18774976-18775089,18774775-18774876,18774589-18774655,18774439-18774506	AT5G46290.2  CDS  gene_syn 3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I, KAS I, MPL12.7, MPL12_7  gene KAS I  function 3-ketoacyl-acyl carrier protein synthase I (KAS I) mRNA,  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process metabolic process|GO:0008152||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function catalytic activity|GO:0003824||IEA  go_function fatty-acid synthase activity|GO:0004312||ISS  product KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I); catalytic/ fatty-acid synthase  note 3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I (KAS I); FUNCTIONS IN: fatty-acid synthase activity, catalytic activity; INVOLVED IN: biosynthetic process, metabolic process; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta-ketoacyl synthase (InterPro:IPR000794), Thiolase-like (InterPro:IPR016039), Beta-ketoacyl synthase, C-terminal (InterPro:IPR014031), Beta-ketoacyl synthase, N-terminal (InterPro:IPR014030), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: FAB1 (FATTY ACID BIOSYNTHESIS 1); 3-oxoacyl-[acyl-carrier-protein] synthase/ fatty-acid synthase (TAIR:AT1G74960.2); Has 19512 Blast hits to 17163 proteins in 1894 species: Archae - 4; Bacteria - 12003; Metazoa - 446; Fungi - 1160; Plants - 198; Viruses - 0; Other Eukaryotes - 5701 (source: NCBI BLink).  protein_id AT5G46290.2p  transcript_id AT5G46290.2  protein_id AT5G46290.2p  transcript_id AT5G46290.2  
At5g46295	chr5:018779904	0.0	C/18779904-18780119	AT5G46295.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, cotyledon, root, pollen tube, leaf; EXPRESSED DURING: LP.06 six leaves visible; Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G46295.1p  transcript_id AT5G46295.1  protein_id AT5G46295.1p  transcript_id AT5G46295.1  
At5g46300	chr5:018783664	0.0	W/18783664-18783765,18783847-18783963,18784043-18784210,18784287-18784394,18784486-18784617	AT5G46300.1  CDS  gene_syn MPL12.8, MPL12_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo; EXPRESSED DURING: C globular stage; Has 60 Blast hits to 58 proteins in 25 species: Archae - 1; Bacteria - 11; Metazoa - 7; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT5G46300.1p  transcript_id AT5G46300.1  protein_id AT5G46300.1p  transcript_id AT5G46300.1  
At5g46310	chr5:018785672	0.0	W/18785672-18786322,18786489-18786956	AT5G46310.1  CDS  gene_syn MPL12.9, MPL12_9  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  product WRKY family transcription factor  note WRKY family transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G46310.1p  transcript_id AT5G46310.1  protein_id AT5G46310.1p  transcript_id AT5G46310.1  
At5g46315	chr5:018787079	0.0	W/18787079-18787990	AT5G46315.1  snRNA  gene_syn 67796.SNRNA00001, U6 SMALL NUCLEOLAR RNA 29, U6-29  gene U6-29  go_component snRNP U6|GO:0005688||TAS  go_process nuclear mRNA splicing, via spliceosome|GO:0000398||TAS  go_function RNA splicing factor activity, transesterification mechanism|GO:0031202||TAS  product U6-29 (U6 SMALL NUCLEOLAR RNA 29); snRNA  note gi|16518|emb|X52529.1|ATSNU629 Arabidopsis thaliana U6-29 snRNA gene  transcript_id AT5G46315.1  
At5g46320	chr5:018788694	0.0	C/18788694-18788888,18788246-18788407	AT5G46320.1  CDS  gene_syn MPL12.11, MPL12_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, flower; EXPRESSED DURING: C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: AGL102 (AGAMOUS-LIKE 102); DNA binding / transcription factor (TAIR:AT1G47760.1); Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G46320.1p  transcript_id AT5G46320.1  protein_id AT5G46320.1p  transcript_id AT5G46320.1  
At5g46325	chr5:018790308	0.0	W/18790308-18790387	AT5G46325.1  tRNA  gene_syn 67796.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: TAG)  transcript_id AT5G46325.1  
At5g46330	chr5:018791802	0.0	W/18791802-18794940,18795025-18795407	AT5G46330.1  CDS  gene_syn FLAGELLIN-SENSITIVE 2, FLS2, MPL12.13, MPL12.8, MPL12_13  gene FLS2  function Encodes a leucine-rich repeat serine/threonine protein kinase that is expressed ubiquitously. FLS2 is involved in MAP kinase signalling relay involved in innate immunity. Essential in the perception of flagellin, a potent elicitor of the defense response. FLS2 is directed for degradation by the bacterial ubiquitin ligase AvrPtoB.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|10911994|ISS  go_component membrane|GO:0016020|16510871|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_process detection of bacterium|GO:0016045|10911994|IMP  go_process defense response to bacterium|GO:0042742|18158241|IMP  go_process defense response to bacterium|GO:0042742|19095898|IMP  go_process callose deposition in cell wall during defense response|GO:0052544|19095898|IMP  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function transmembrane receptor protein serine/threonine kinase activity|GO:0004675|10911994|ISS  go_function transmembrane receptor protein serine/threonine kinase activity|GO:0004675|16377758|IMP  go_function transmembrane receptor protein serine/threonine kinase activity|GO:0004675|16377758|IPI  go_function protein binding|GO:0005515|11564731|IDA  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product FLS2 (FLAGELLIN-SENSITIVE 2); ATP binding / kinase/ protein binding / protein serine/threonine kinase/ transmembrane receptor protein serine/threonine kinase  note FLAGELLIN-SENSITIVE 2 (FLS2); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, transmembrane receptor protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: defense response to bacterium, transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation, detection of bacterium, callose deposition in cell wall during defense response; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT1G35710.1); Has 182174 Blast hits to 99914 proteins in 3486 species: Archae - 121; Bacteria - 14829; Metazoa - 74887; Fungi - 7436; Plants - 62507; Viruses - 352; Other Eukaryotes - 22042 (source: NCBI BLink).  protein_id AT5G46330.1p  transcript_id AT5G46330.1  protein_id AT5G46330.1p  transcript_id AT5G46330.1  
At5g46340	chr5:018799693	0.0	C/18799693-18799725,18799011-18799102,18798761-18798898,18798611-18798667,18798462-18798534,18798237-18798395,18797974-18798123,18797641-18797896,18797416-18797531,18797251-18797337,18797074-18797162,18796911-18796973,18796763-18796819,18796599-18796695,18796361-18796516	AT5G46340.1  CDS  gene_syn MPL12.14, MPL12_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product O-acetyltransferase-related  note O-acetyltransferase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cas1p-like (InterPro:IPR012419); BEST Arabidopsis thaliana protein match is: O-acetyltransferase family protein (TAIR:AT2G34410.2); Has 186 Blast hits to 184 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 97; Fungi - 25; Plants - 57; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G46340.1p  transcript_id AT5G46340.1  protein_id AT5G46340.1p  transcript_id AT5G46340.1  
At5g46350	chr5:018803435	0.0	C/18803435-18803901,18802502-18802642,18801403-18801775	AT5G46350.1  CDS  gene_syn ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 8, ATWRKY8, MPL12.15, MPL12_15, WRKY DNA-BINDING PROTEIN 8, WRKY8  gene WRKY8  function member of WRKY Transcription Factor; Group II-c  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY8; transcription factor  note WRKY8; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY group IIc (InterPro:IPR017396); BEST Arabidopsis thaliana protein match is: WRKY28; transcription factor (TAIR:AT4G18170.1); Has 2035 Blast hits to 1745 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 10; Plants - 2013; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT5G46350.1p  transcript_id AT5G46350.1  protein_id AT5G46350.1p  transcript_id AT5G46350.1  
At5g46360	chr5:018807503	0.0	C/18807503-18808134,18806858-18807008	AT5G46360.1  CDS  gene_syn ATKCO3, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 3, KCO3, MPL12.16, MPL12_16  gene KCO3  function Encodes AtKCO3, a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins. AtKCO3 is targeted to the vacuolar membrane. Forms homomeric ion channels in vivo.  go_component plant-type vacuole membrane|GO:0009705|16984403|IDA  go_process protein homooligomerization|GO:0051260|16984403|IPI  go_function calcium ion binding|GO:0005509||ISS  go_function outward rectifier potassium channel activity|GO:0015271||ISS  product KCO3 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 3); calcium ion binding / outward rectifier potassium channel  note CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 3 (KCO3); FUNCTIONS IN: outward rectifier potassium channel activity, calcium ion binding; INVOLVED IN: protein homooligomerization; LOCATED IN: plant-type vacuole membrane; EXPRESSED IN: hydathode, vascular tissue, flower, root, leaf; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: KCO2 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 2); calcium ion binding / outward rectifier potassium channel (TAIR:AT5G46370.1); Has 152 Blast hits to 119 proteins in 20 species: Archae - 4; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT5G46360.1p  transcript_id AT5G46360.1  protein_id AT5G46360.1p  transcript_id AT5G46360.1  
At5g46370	chr5:018810564	0.0	C/18810564-18811720,18809623-18809797	AT5G46370.1  CDS  gene_syn ATKCO2, ATTPK2, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 2, KCO2, MPL12.17, MPL12_17, TANDEM PORE K+ CHANNEL 2  gene KCO2  function Encodes AtTPK2 (KCO2), a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins. AtTPK2 is targeted to the vacuolar membrane. May form homomeric ion channels in vivo.  go_process potassium ion transport|GO:0006813||IEA  go_component plant-type vacuole membrane|GO:0009705|16984403|IDA  go_function calcium ion binding|GO:0005509||ISS  go_function outward rectifier potassium channel activity|GO:0015271||ISS  product KCO2 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 2); calcium ion binding / outward rectifier potassium channel  note CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 2 (KCO2); FUNCTIONS IN: outward rectifier potassium channel activity, calcium ion binding; INVOLVED IN: potassium ion transport; LOCATED IN: plant-type vacuole membrane; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), Potassium channel, two pore-domain (InterPro:IPR003280), Ion transport 2 (InterPro:IPR013099); BEST Arabidopsis thaliana protein match is: KCO6; outward rectifier potassium channel (TAIR:AT4G18160.1); Has 3157 Blast hits to 2975 proteins in 589 species: Archae - 74; Bacteria - 1009; Metazoa - 1157; Fungi - 99; Plants - 152; Viruses - 0; Other Eukaryotes - 666 (source: NCBI BLink).  protein_id AT5G46370.1p  transcript_id AT5G46370.1  protein_id AT5G46370.1p  transcript_id AT5G46370.1  
At5g46380	chr5:018815812	0.0	C/18815812-18815974,18815545-18815588,18815349-18815451,18815200-18815254,18814713-18815077,18814443-18814623,18814113-18814368,18813844-18813960,18813343-18813753,18813088-18813216	AT5G46380.1  CDS  gene_syn MPL12.18, MPL12_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1296 (InterPro:IPR009719); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G18150.1); Has 501 Blast hits to 467 proteins in 56 species: Archae - 0; Bacteria - 71; Metazoa - 52; Fungi - 10; Plants - 73; Viruses - 0; Other Eukaryotes - 295 (source: NCBI BLink).  protein_id AT5G46380.1p  transcript_id AT5G46380.1  protein_id AT5G46380.1p  transcript_id AT5G46380.1  
At5g46390	chr5:018816612	0.0	W/18816612-18817055,18817138-18817257,18817355-18817492,18817580-18817684,18817779-18817947,18818048-18818124,18818228-18818272,18818417-18818500,18818592-18818630,18818715-18818777,18818869-18818998,18819093-18819148	AT5G46390.2  CDS  gene_syn MPL12.19, MPL12_19  go_process proteolysis|GO:0006508||IEA  go_function protein binding|GO:0005515||IEA  go_function serine-type peptidase activity|GO:0008236||IEA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_process intracellular signaling cascade|GO:0007242||ISS  product peptidase S41 family protein  note peptidase S41 family protein; FUNCTIONS IN: serine-type peptidase activity, protein binding; INVOLVED IN: proteolysis, intracellular signaling cascade; LOCATED IN: chloroplast thylakoid lumen; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S41 (InterPro:IPR005151), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase S41A, C-terminal protease (InterPro:IPR004447); BEST Arabidopsis thaliana protein match is: peptidase S41 family protein (TAIR:AT3G57680.1); Has 6311 Blast hits to 6311 proteins in 1072 species: Archae - 0; Bacteria - 3020; Metazoa - 118; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 3096 (source: NCBI BLink).  protein_id AT5G46390.2p  transcript_id AT5G46390.2  protein_id AT5G46390.2p  transcript_id AT5G46390.2  
At5g46390	chr5:018816612	0.0	W/18816612-18817055,18817138-18817257,18817355-18817492,18817580-18817684,18817779-18817947,18818048-18818124,18818228-18818272,18818417-18818605	AT5G46390.1  CDS  gene_syn MPL12.19, MPL12_19  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_process proteolysis|GO:0006508||IEA  go_function protein binding|GO:0005515||IEA  go_function serine-type peptidase activity|GO:0008236||IEA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_process intracellular signaling cascade|GO:0007242||ISS  product peptidase S41 family protein  note peptidase S41 family protein; FUNCTIONS IN: serine-type peptidase activity, protein binding; INVOLVED IN: proteolysis, intracellular signaling cascade; LOCATED IN: thylakoid lumen, chloroplast thylakoid lumen; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S41 (InterPro:IPR005151), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: peptidase S41 family protein (TAIR:AT3G57680.1); Has 4921 Blast hits to 4921 proteins in 1040 species: Archae - 0; Bacteria - 2688; Metazoa - 109; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 2050 (source: NCBI BLink).  protein_id AT5G46390.1p  transcript_id AT5G46390.1  protein_id AT5G46390.1p  transcript_id AT5G46390.1  
At5g46400	chr5:018820032	0.0	W/18820032-18820110,18820229-18820332,18820460-18820689,18820944-18821111,18821228-18821594,18821684-18821827,18821933-18822085,18822168-18822287,18822451-18822531,18822677-18822826,18822920-18824368,18824457-18824522	AT5G46400.1  CDS  gene_syn AT PRP39-2, MPL12.20, MPL12_20, PRP39-2  gene PRP39-2  go_component intracellular|GO:0005622||IEA  go_process RNA processing|GO:0006396||IEA  product PRP39-2  note PRP39-2; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107); BEST Arabidopsis thaliana protein match is: PRP39; binding (TAIR:AT1G04080.1); Has 39577 Blast hits to 18233 proteins in 717 species: Archae - 6; Bacteria - 1449; Metazoa - 13066; Fungi - 4212; Plants - 3374; Viruses - 183; Other Eukaryotes - 17287 (source: NCBI BLink).  protein_id AT5G46400.1p  transcript_id AT5G46400.1  protein_id AT5G46400.1p  transcript_id AT5G46400.1  
At5g46410	chr5:018826007	0.0	W/18826007-18826172,18826287-18826417,18826498-18826579,18826658-18827152,18827427-18827764,18827998-18828156	AT5G46410.2  CDS  gene_syn MPL12.21, MPL12_21  go_function phosphatase activity|GO:0016791||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product NLI interacting factor (NIF) family protein  note NLI interacting factor (NIF) family protein; FUNCTIONS IN: phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Dullard-like phosphatase domain (InterPro:IPR011948), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: phosphatase (TAIR:AT4G18140.2); Has 1966 Blast hits to 1962 proteins in 182 species: Archae - 0; Bacteria - 10; Metazoa - 732; Fungi - 353; Plants - 202; Viruses - 7; Other Eukaryotes - 662 (source: NCBI BLink).  protein_id AT5G46410.2p  transcript_id AT5G46410.2  protein_id AT5G46410.2p  transcript_id AT5G46410.2  
At5g46410	chr5:018826007	0.0	W/18826007-18826172,18826296-18826417,18826498-18826579,18826658-18827152,18827427-18827764,18827998-18828156	AT5G46410.1  CDS  gene_syn MPL12.21, MPL12_21  go_function phosphatase activity|GO:0016791||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product NLI interacting factor (NIF) family protein  note NLI interacting factor (NIF) family protein; FUNCTIONS IN: phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Dullard-like phosphatase domain (InterPro:IPR011948), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: phosphatase (TAIR:AT4G18140.2); Has 1962 Blast hits to 1958 proteins in 182 species: Archae - 0; Bacteria - 10; Metazoa - 730; Fungi - 351; Plants - 202; Viruses - 7; Other Eukaryotes - 662 (source: NCBI BLink).  protein_id AT5G46410.1p  transcript_id AT5G46410.1  protein_id AT5G46410.1p  transcript_id AT5G46410.1  
At5g46417	chr5:018829781	0.0	C/18829781-18829888	AT5G46417.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G46417.1p  transcript_id AT5G46417.1  protein_id AT5G46417.1p  transcript_id AT5G46417.1  
At5g46420	chr5:018829999	0.0	W/18829999-18830191,18830370-18830509,18830626-18830760,18830844-18830954,18831033-18831293,18831395-18831594,18831674-18831944,18832029-18832139,18832223-18832414,18832546-18832893	AT5G46420.1  CDS  gene_syn K11I1.1, K11I1_1  go_component chloroplast|GO:0009507|18431481|IDA  go_process rRNA processing|GO:0006364||IEA  go_process metabolic process|GO:0008152||IEA  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_function ribosome binding|GO:0043022||IEA  go_process rRNA processing|GO:0006364||ISS  go_process ribosome biogenesis|GO:0042254||ISS  product 16S rRNA processing protein RimM family  note 16S rRNA processing protein RimM family; FUNCTIONS IN: ribosome binding, nucleotidyltransferase activity; INVOLVED IN: metabolic process, rRNA processing, ribosome biogenesis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PRC-barrel (InterPro:IPR007903), UTP--glucose-1-phosphate uridylyltransferase (InterPro:IPR002618), RimM protein (InterPro:IPR002676), 16S rRNA processing protein RimM (InterPro:IPR011961); BEST Arabidopsis thaliana protein match is: UDP-N-acetylglucosamine pyrophosphorylase-related (TAIR:AT1G31070.2); Has 3596 Blast hits to 3596 proteins in 1249 species: Archae - 0; Bacteria - 2487; Metazoa - 162; Fungi - 86; Plants - 59; Viruses - 0; Other Eukaryotes - 802 (source: NCBI BLink).  protein_id AT5G46420.1p  transcript_id AT5G46420.1  protein_id AT5G46420.1p  transcript_id AT5G46420.1  
At5g46430	chr5:018833429	0.0	W/18833429-18833518,18834000-18834181,18834280-18834409	AT5G46430.1  CDS  gene_syn K11I1.2, K11I1_2  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L32 (RPL32B)  note 60S ribosomal protein L32 (RPL32B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, ribosome; CONTAINS InterPro DOMAIN/s: Ribosomal protein L32e (InterPro:IPR001515), Ribosomal protein L32e, conserved site (InterPro:IPR018263); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L32 (RPL32A) (TAIR:AT4G18100.1); Has 1111 Blast hits to 1111 proteins in 342 species: Archae - 217; Bacteria - 0; Metazoa - 540; Fungi - 96; Plants - 104; Viruses - 0; Other Eukaryotes - 154 (source: NCBI BLink).  protein_id AT5G46430.1p  transcript_id AT5G46430.1  protein_id AT5G46430.1p  transcript_id AT5G46430.1  
At5g46430	chr5:018833429	0.0	W/18833429-18833518,18834000-18834181,18834280-18834409	AT5G46430.2  CDS  gene_syn K11I1.2, K11I1_2  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L32 (RPL32B)  note 60S ribosomal protein L32 (RPL32B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, ribosome; CONTAINS InterPro DOMAIN/s: Ribosomal protein L32e (InterPro:IPR001515), Ribosomal protein L32e, conserved site (InterPro:IPR018263); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L32 (RPL32A) (TAIR:AT4G18100.1); Has 1111 Blast hits to 1111 proteins in 342 species: Archae - 217; Bacteria - 0; Metazoa - 540; Fungi - 96; Plants - 104; Viruses - 0; Other Eukaryotes - 154 (source: NCBI BLink).  protein_id AT5G46430.2p  transcript_id AT5G46430.2  protein_id AT5G46430.2p  transcript_id AT5G46430.2  
At5g46440	chr5:018834872	0.0	W/18834872-18835153	AT5G46440.1  CDS  gene_syn K11I1.3, K11I1_3  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G46460.1); Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G46440.1p  transcript_id AT5G46440.1  protein_id AT5G46440.1p  transcript_id AT5G46440.1  
At5g46450	chr5:018835618	0.0	W/18835618-18836087,18836182-18837289,18837419-18837715,18837819-18838226,18838458-18839546	AT5G46450.1  CDS  gene_syn K11I1.4, K11I1_4  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G46470.1); Has 15812 Blast hits to 10976 proteins in 419 species: Archae - 12; Bacteria - 972; Metazoa - 1409; Fungi - 37; Plants - 12667; Viruses - 6; Other Eukaryotes - 709 (source: NCBI BLink).  protein_id AT5G46450.1p  transcript_id AT5G46450.1  protein_id AT5G46450.1p  transcript_id AT5G46450.1  
At5g46460	chr5:018840305	0.0	W/18840305-18842398	AT5G46460.1  CDS  gene_syn K11I1.5, K11I1_5  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G02750.1); Has 15062 Blast hits to 4916 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 61; Fungi - 25; Plants - 14699; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink).  protein_id AT5G46460.1p  transcript_id AT5G46460.1  protein_id AT5G46460.1p  transcript_id AT5G46460.1  
At5g46470	chr5:018842701	0.0	W/18842701-18843173,18843268-18844378,18844496-18844801,18844911-18845288,18845584-18846660,18846771-18846809	AT5G46470.1  CDS  gene_syn K11I1.6, K11I1_6  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat 3 (InterPro:IPR011713), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G46450.1); Has 17284 Blast hits to 11514 proteins in 478 species: Archae - 21; Bacteria - 808; Metazoa - 1810; Fungi - 96; Plants - 13760; Viruses - 9; Other Eukaryotes - 780 (source: NCBI BLink).  protein_id AT5G46470.1p  transcript_id AT5G46470.1  protein_id AT5G46470.1p  transcript_id AT5G46470.1  
At5g46490	chr5:018850848	0.0	W/18850848-18851305,18851396-18851966,18852374-18852418	AT5G46490.1  CDS  gene_syn K11I1.8, K11I1_8  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS class), putative  note disease resistance protein (TIR-NBS class), putative; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G46260.1); Has 3793 Blast hits to 3712 proteins in 142 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 2; Plants - 3780; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G46490.1p  transcript_id AT5G46490.1  protein_id AT5G46490.1p  transcript_id AT5G46490.1  
At5g46490	chr5:018850848	0.0	W/18850848-18851305,18851396-18852512,18852636-18852814,18852909-18853218,18853331-18853843	AT5G46490.2  CDS  gene_syn K11I1.8, K11I1_8  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS class), putative  note disease resistance protein (TIR-NBS class), putative; FUNCTIONS IN: transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G46260.1); Has 9630 Blast hits to 7316 proteins in 255 species: Archae - 4; Bacteria - 137; Metazoa - 136; Fungi - 15; Plants - 9159; Viruses - 10; Other Eukaryotes - 169 (source: NCBI BLink).  protein_id AT5G46490.2p  transcript_id AT5G46490.2  protein_id AT5G46490.2p  transcript_id AT5G46490.2  
At5g46500	chr5:018856454	0.0	W/18856454-18857339,18857420-18857787	AT5G46500.1  CDS  gene_syn K11I1.9, K11I1_9  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, LP.10 ten leaves visible, LP.08 eight leaves visible; BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G46260.1); Has 61 Blast hits to 44 proteins in 8 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G46500.1p  transcript_id AT5G46500.1  protein_id AT5G46500.1p  transcript_id AT5G46500.1  
At5g46510	chr5:018860451	0.0	W/18860451-18860905,18861001-18862123,18862238-18862537,18862637-18863047,18863294-18864917,18865062-18865210	AT5G46510.1  CDS  gene_syn K11I1.10, K11I1_10  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor (TAIR:AT5G46520.1); Has 12837 Blast hits to 9301 proteins in 365 species: Archae - 6; Bacteria - 470; Metazoa - 836; Fungi - 45; Plants - 11072; Viruses - 15; Other Eukaryotes - 393 (source: NCBI BLink).  protein_id AT5G46510.1p  transcript_id AT5G46510.1  protein_id AT5G46510.1p  transcript_id AT5G46510.1  
At5g46520	chr5:018867840	0.0	W/18867840-18868297,18868387-18869509,18869624-18869923,18870023-18870433,18870680-18871876,18871959-18871976	AT5G46520.1  CDS  gene_syn K11I1.11, K11I1_11  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor  note ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor; FUNCTIONS IN: transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat 3 (InterPro:IPR011713), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G46510.1); Has 12759 Blast hits to 9329 proteins in 368 species: Archae - 6; Bacteria - 480; Metazoa - 867; Fungi - 45; Plants - 10949; Viruses - 15; Other Eukaryotes - 397 (source: NCBI BLink).  protein_id AT5G46520.1p  transcript_id AT5G46520.1  protein_id AT5G46520.1p  transcript_id AT5G46520.1  
At5g46530	chr5:018875576	0.0	W/18875576-18875702,18876137-18876356,18876498-18876543,18876699-18876779	AT5G46530.1  CDS  gene_syn K11I1.12, K11I1_12  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: AWPM-19-like (InterPro:IPR008390); BEST Arabidopsis thaliana protein match is: AWPM-19-like membrane family protein (TAIR:AT1G29520.1); Has 98 Blast hits to 98 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G46530.1p  transcript_id AT5G46530.1  protein_id AT5G46530.1p  transcript_id AT5G46530.1  
At5g46540	chr5:018882117	0.0	C/18882117-18882347,18881473-18881527,18881213-18881388,18880901-18881122,18880586-18880824,18879977-18880502,18879624-18879897,18878926-18879544,18878618-18878846,18878274-18878540,18877927-18878190,18877192-18877836	AT5G46540.1  CDS  gene_syn K11I1.13, K11I1_13, P-GLYCOPROTEIN 7, PGP7  gene PGP7  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product PGP7 (P-GLYCOPROTEIN 7); ATPase, coupled to transmembrane movement of substances  note P-GLYCOPROTEIN 7 (PGP7); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: integral to membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PGP9 (P-GLYCOPROTEIN 9); ATPase, coupled to transmembrane movement of substances (TAIR:AT4G18050.1); Has 497710 Blast hits to 233819 proteins in 2692 species: Archae - 8811; Bacteria - 335036; Metazoa - 15263; Fungi - 7680; Plants - 4601; Viruses - 35; Other Eukaryotes - 126284 (source: NCBI BLink).  protein_id AT5G46540.1p  transcript_id AT5G46540.1  protein_id AT5G46540.1p  transcript_id AT5G46540.1  
At5g46550	chr5:018885685	0.0	C/18885685-18886503,18885526-18885586,18885343-18885426,18885117-18885241,18884956-18885022,18884758-18884867,18884439-18884657	AT5G46550.1  CDS  gene_syn F10E10.2, F10E10_2  go_function DNA binding|GO:0003677||ISS  product DNA-binding bromodomain-containing protein  note DNA-binding bromodomain-containing protein; FUNCTIONS IN: DNA binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: ATBET9 (Arabidopsis thaliana Bromodomain and Extraterminal Domain protein 9); DNA binding (TAIR:AT5G14270.1); Has 4936 Blast hits to 4048 proteins in 188 species: Archae - 0; Bacteria - 4; Metazoa - 3328; Fungi - 707; Plants - 323; Viruses - 0; Other Eukaryotes - 574 (source: NCBI BLink).  protein_id AT5G46550.1p  transcript_id AT5G46550.1  protein_id AT5G46550.1p  transcript_id AT5G46550.1  
At5g46560	chr5:018888061	0.0	W/18888061-18888328,18888412-18888539,18888629-18888700,18888803-18888942,18889029-18889143,18889236-18889316,18889413-18889553,18889697-18889784,18889868-18889984,18890077-18890090	AT5G46560.1  CDS  gene_syn F10E10.3, F10E10_3  go_component chloroplast thylakoid lumen|GO:0009543|11719511|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid lumen; EXPRESSED IN: stem, inflorescence meristem, hypocotyl, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; Has 28 Blast hits to 28 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 8; Plants - 8; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G46560.1p  transcript_id AT5G46560.1  protein_id AT5G46560.1p  transcript_id AT5G46560.1  
At5g46570	chr5:018894687	0.0	W/18894687-18894762,18894992-18895209,18895568-18895703,18895800-18896039,18896125-18896210,18896323-18896511,18896597-18896869,18896947-18897198	AT5G46570.1  CDS  gene_syn BR-SIGNALING KINASE 2, BSK2, F10E10.4, F10E10_4  gene BSK2  function Encodes BR-signaling kinase 2 (BSK2), one of the three homologous BR-signaling kinases (BSK1, AT4G35230; BSK2, AT5G46570; BSK3, AT4G00710). Mediates signal transduction from receptor kinase BRI1 by functioning as the substrate of BRI1. Plasma membrane localized.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function binding|GO:0005488||IEA  go_function ATP binding|GO:0005524||IEA  go_component plasma membrane|GO:0005886|18653891|IDA  go_process brassinosteroid mediated signaling|GO:0009742|18653891|IDA  go_function kinase activity|GO:0016301||ISS  product BSK2 (BR-SIGNALING KINASE 2); ATP binding / binding / kinase/ protein kinase/ protein tyrosine kinase  note BR-SIGNALING KINASE 2 (BSK2); FUNCTIONS IN: protein tyrosine kinase activity, binding, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: brassinosteroid mediated signaling, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase-related (TAIR:AT5G59010.1); Has 22980 Blast hits to 22723 proteins in 945 species: Archae - 8; Bacteria - 1446; Metazoa - 6886; Fungi - 518; Plants - 12471; Viruses - 95; Other Eukaryotes - 1556 (source: NCBI BLink).  protein_id AT5G46570.1p  transcript_id AT5G46570.1  protein_id AT5G46570.1p  transcript_id AT5G46570.1  
At5g46580	chr5:018897510	0.0	C/18897510-18899645	AT5G46580.1  CDS  gene_syn F10E10.5, F10E10_5  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16390.1); Has 20271 Blast hits to 5831 proteins in 183 species: Archae - 4; Bacteria - 27; Metazoa - 419; Fungi - 353; Plants - 18637; Viruses - 0; Other Eukaryotes - 831 (source: NCBI BLink).  protein_id AT5G46580.1p  transcript_id AT5G46580.1  protein_id AT5G46580.1p  transcript_id AT5G46580.1  
At5g46590	chr5:018905679	0.0	W/18905679-18905835,18905918-18906201,18906290-18906529,18906614-18906811	AT5G46590.1  CDS  gene_syn Arabidopsis NAC domain containing protein 96, F10E10.6, F10E10_6, anac096  gene anac096  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac096 (Arabidopsis NAC domain containing protein 96); transcription factor  note Arabidopsis NAC domain containing protein 96 (anac096); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac071 (Arabidopsis NAC domain containing protein 71); transcription factor (TAIR:AT4G17980.1); Has 1615 Blast hits to 1611 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1615; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G46590.1p  transcript_id AT5G46590.1  protein_id AT5G46590.1p  transcript_id AT5G46590.1  
At5g46595	chr5:018907523	0.0	W/18907523-18907594	AT5G46595.1  tRNA  gene_syn 67798.TRNA-CYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Cys (anticodon: GCA)  transcript_id AT5G46595.1  
At5g46600	chr5:018910454	0.0	C/18910454-18910742,18909708-18909848,18909162-18909434,18908906-18909036,18908580-18908723,18907849-18908490	AT5G46600.1  CDS  gene_syn F10E10.8, F10E10_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0005 (InterPro:IPR006214); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46610.1); Has 350 Blast hits to 347 proteins in 92 species: Archae - 0; Bacteria - 113; Metazoa - 0; Fungi - 15; Plants - 202; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT5G46600.1p  transcript_id AT5G46600.1  protein_id AT5G46600.1p  transcript_id AT5G46600.1  
At5g46610	chr5:018915451	0.0	C/18915451-18915736,18914523-18914795,18914114-18914235,18913890-18914033,18913115-18913780	AT5G46610.3  CDS  gene_syn F10E10.9, F10E10_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0005 (InterPro:IPR006214); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17970.1); Has 200 Blast hits to 199 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 196; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G46610.3p  transcript_id AT5G46610.3  protein_id AT5G46610.3p  transcript_id AT5G46610.3  
At5g46610	chr5:018915451	0.0	C/18915451-18915736,18915016-18915084,18914523-18914795,18914114-18914235,18913890-18914033,18913115-18913780	AT5G46610.2  CDS  gene_syn F10E10.9, F10E10_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0005 (InterPro:IPR006214); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17970.1); Has 218 Blast hits to 217 proteins in 26 species: Archae - 0; Bacteria - 22; Metazoa - 0; Fungi - 0; Plants - 196; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G46610.2p  transcript_id AT5G46610.2  protein_id AT5G46610.2p  transcript_id AT5G46610.2  
At5g46610	chr5:018915451	0.0	C/18915451-18915736,18915016-18915156,18914523-18914795,18914114-18914235,18913890-18914033,18913115-18913780	AT5G46610.1  CDS  gene_syn F10E10.9, F10E10_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0005 (InterPro:IPR006214); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17970.1); Has 334 Blast hits to 332 proteins in 79 species: Archae - 0; Bacteria - 96; Metazoa - 0; Fungi - 22; Plants - 204; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT5G46610.1p  transcript_id AT5G46610.1  protein_id AT5G46610.1p  transcript_id AT5G46610.1  
At5g46620	chr5:018918853	0.0	C/18918853-18919128,18917850-18918023	AT5G46620.1  CDS  gene_syn F10E10.1, F10E10_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17960.1); Has 22 Blast hits to 21 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G46620.1p  transcript_id AT5G46620.1  protein_id AT5G46620.1p  transcript_id AT5G46620.1  
At5g46630	chr5:018920580	0.0	W/18920580-18920662,18920830-18921007,18921123-18921213,18921338-18921432,18921586-18921675,18921760-18921808,18921901-18922039,18922115-18922231,18922303-18922393,18922485-18922627,18922723-18922837,18922926-18922970,18923172-18923252	AT5G46630.1  CDS  function clathrin adaptor complexes medium subunit family protein, contains Pfam profile: PF00928 adaptor complexes medium subunit family; similar to micro-adaptins of clathrin coated vesicle adaptor complexes  go_component plasma membrane|GO:0005886|17317660|IDA  go_process transport|GO:0006810||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function protein binding|GO:0005515||IEA  go_component clathrin vesicle coat|GO:0030125||ISS  go_process intracellular protein transport|GO:0006886||ISS  product clathrin adaptor complexes medium subunit family protein  note clathrin adaptor complexes medium subunit family protein; FUNCTIONS IN: protein binding; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport; LOCATED IN: clathrin vesicle coat, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, conserved site (InterPro:IPR018240), Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968), Clathrin adaptor, mu subunit (InterPro:IPR001392), Clathrin coat associated protein AP-50 (InterPro:IPR015629), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: HAP13 (HAPLESS 13); protein binding (TAIR:AT1G60780.1); Has 1610 Blast hits to 1576 proteins in 210 species: Archae - 0; Bacteria - 0; Metazoa - 927; Fungi - 298; Plants - 105; Viruses - 0; Other Eukaryotes - 280 (source: NCBI BLink).  protein_id AT5G46630.1p  transcript_id AT5G46630.1  protein_id AT5G46630.1p  transcript_id AT5G46630.1  
At5g46630	chr5:018920580	0.0	W/18920580-18920662,18920830-18921007,18921123-18921213,18921338-18921432,18921586-18921675,18921760-18921808,18921901-18922039,18922115-18922231,18922303-18922393,18922485-18922627,18922723-18922837,18922926-18923060	AT5G46630.2  CDS  function clathrin adaptor complexes medium subunit family protein, contains Pfam profile: PF00928 adaptor complexes medium subunit family; similar to micro-adaptins of clathrin coated vesicle adaptor complexes  go_component plasma membrane|GO:0005886|17317660|IDA  go_process transport|GO:0006810||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function protein binding|GO:0005515||IEA  go_component clathrin vesicle coat|GO:0030125||ISS  go_process intracellular protein transport|GO:0006886||ISS  product clathrin adaptor complexes medium subunit family protein  note clathrin adaptor complexes medium subunit family protein; FUNCTIONS IN: protein binding; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport; LOCATED IN: clathrin vesicle coat, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, conserved site (InterPro:IPR018240), Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968), Clathrin adaptor, mu subunit (InterPro:IPR001392), Clathrin coat associated protein AP-50 (InterPro:IPR015629), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: HAP13 (HAPLESS 13); protein binding (TAIR:AT1G60780.1); Has 1596 Blast hits to 1565 proteins in 210 species: Archae - 0; Bacteria - 0; Metazoa - 918; Fungi - 294; Plants - 104; Viruses - 0; Other Eukaryotes - 280 (source: NCBI BLink).  protein_id AT5G46630.2p  transcript_id AT5G46630.2  protein_id AT5G46630.2p  transcript_id AT5G46630.2  
At5g46640	chr5:018924670	0.0	W/18924670-18925186,18925303-18925358,18925525-18925656,18925740-18925901,18925999-18926292	AT5G46640.1  CDS  gene_syn MZA15.3, MZA15_3  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product DNA-binding family protein  note DNA-binding family protein; FUNCTIONS IN: DNA binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding, conserved site (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: DNA-binding family protein (TAIR:AT4G17950.1); Has 568 Blast hits to 566 proteins in 77 species: Archae - 0; Bacteria - 71; Metazoa - 61; Fungi - 2; Plants - 415; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT5G46640.1p  transcript_id AT5G46640.1  protein_id AT5G46640.1p  transcript_id AT5G46640.1  
At5g46645	chr5:018927457	0.0	C/18927457-18929493	AT5G46645.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 0.00040 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At5g46650	chr5:018930443	0.0	W/18930443-18931312	AT5G46650.1  CDS  gene_syn MZA15.5, MZA15_5  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G17920.1); Has 6947 Blast hits to 6931 proteins in 219 species: Archae - 0; Bacteria - 0; Metazoa - 2358; Fungi - 599; Plants - 2630; Viruses - 35; Other Eukaryotes - 1325 (source: NCBI BLink).  protein_id AT5G46650.1p  transcript_id AT5G46650.1  protein_id AT5G46650.1p  transcript_id AT5G46650.1  
At5g46660	chr5:018932181	0.0	W/18932181-18933098	AT5G46660.1  CDS  gene_syn MZA15.6, MZA15_6  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product CHP-rich zinc finger protein, putative  note CHP-rich zinc finger protein, putative; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT4G10370.1); Has 972 Blast hits to 432 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 972; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G46660.1p  transcript_id AT5G46660.1  protein_id AT5G46660.1p  transcript_id AT5G46660.1  
At5g46665	chr5:018935312	0.0	C/18935312-18938345	AT5G46665.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At5g46670	chr5:018939041	0.0	W/18939041-18940039	AT5G46670.1  CDS  gene_syn MZA15.8, MZA15_8  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product CHP-rich zinc finger protein, putative  note CHP-rich zinc finger protein, putative; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT5G55780.1); Has 687 Blast hits to 407 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 687; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G46670.1p  transcript_id AT5G46670.1  protein_id AT5G46670.1p  transcript_id AT5G46670.1  
At5g46680	chr5:018941118	0.0	W/18941118-18942524	AT5G46680.1  CDS  gene_syn MZA15.9, MZA15_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G09900.1); Has 21734 Blast hits to 5823 proteins in 180 species: Archae - 3; Bacteria - 32; Metazoa - 404; Fungi - 356; Plants - 20128; Viruses - 0; Other Eukaryotes - 811 (source: NCBI BLink).  protein_id AT5G46680.1p  transcript_id AT5G46680.1  protein_id AT5G46680.1p  transcript_id AT5G46680.1  
At5g46690	chr5:018945639	0.0	W/18945639-18945995,18946315-18946782,18947276-18947434	AT5G46690.1  CDS  gene_syn MZA15.10, MZA15_10, bHLH071, beta HLH protein 71  gene bHLH071  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product bHLH071 (beta HLH protein 71); DNA binding / transcription factor  note beta HLH protein 71 (bHLH071); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (bHLH096) (TAIR:AT1G72210.1); Has 759 Blast hits to 756 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 19; Plants - 737; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G46690.1p  transcript_id AT5G46690.1  protein_id AT5G46690.1p  transcript_id AT5G46690.1  
At5g46700	chr5:018951035	0.0	W/18951035-18951532,18952128-18952439	AT5G46700.1  CDS  gene_syn MZA15.11, MZA15_11, TET1, TETRASPANIN 1, TORNADO 2, TRN2  gene TRN2  function Encodes a transmembrane protein of the tetraspanin (TET) family, one of 17 members found in Arabidopsis. Double mutant analysis showed that TRN1 and TRN2 act in the same pathway. Required for the maintenance of both the radial pattern of tissue differentiation in the root and for the subsequent circumferential pattern within the epidermis.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process aging|GO:0007568||ISS  go_process meristem structural organization|GO:0009933|10887093|IMP  go_process radial pattern formation|GO:0009956|10887093|IMP  go_process root morphogenesis|GO:0010015|10887093|IMP  go_process leaf vascular tissue pattern formation|GO:0010305|16531491|IMP  go_function molecular_function|GO:0003674||ND  product TRN2 (TORNADO 2)  note TORNADO 2 (TRN2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: radial pattern formation, meristem structural organization, aging, leaf vascular tissue pattern formation, root morphogenesis; LOCATED IN: plasma membrane; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: TET2 (TETRASPANIN2) (TAIR:AT2G19580.1); Has 236 Blast hits to 236 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 0; Plants - 209; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G46700.1p  transcript_id AT5G46700.1  protein_id AT5G46700.1p  transcript_id AT5G46700.1  
At5g46710	chr5:018954422	0.0	C/18954422-18954484,18953544-18953723,18953244-18953462,18952839-18953057	AT5G46710.1  CDS  gene_syn MZA15.12, MZA15_12  go_process biological_process|GO:0008150||ND  go_function binding|GO:0005488||ISS  product zinc-binding family protein  note zinc-binding family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734); BEST Arabidopsis thaliana protein match is: zinc-binding family protein (TAIR:AT4G17900.1); Has 201 Blast hits to 201 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 193; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G46710.1p  transcript_id AT5G46710.1  protein_id AT5G46710.1p  transcript_id AT5G46710.1  
At5g46720	chr5:018959183	0.0	W/18959183-18959710	AT5G46720.1  CDS  gene_syn MZA15.13, MZA15_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Butirosin biosynthesis, BtrG-like (InterPro:IPR013024), AIG2-like (InterPro:IPR009288); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02910.1); Has 249 Blast hits to 249 proteins in 85 species: Archae - 5; Bacteria - 65; Metazoa - 121; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT5G46720.1p  transcript_id AT5G46720.1  protein_id AT5G46720.1p  transcript_id AT5G46720.1  
At5g46730	chr5:018964030	0.0	W/18964030-18964588,18964721-18964902	AT5G46730.2  CDS  gene_syn MZA15.15, MZA15_15  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 456 Blast hits to 449 proteins in 118 species: Archae - 0; Bacteria - 152; Metazoa - 136; Fungi - 41; Plants - 33; Viruses - 4; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT5G46730.2p  transcript_id AT5G46730.2  protein_id AT5G46730.2p  transcript_id AT5G46730.2  
At5g46730	chr5:018964030	0.0	W/18964030-18964902	AT5G46730.1  CDS  gene_syn MZA15.15, MZA15_15  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 398950 Blast hits to 59622 proteins in 2195 species: Archae - 949; Bacteria - 88091; Metazoa - 156035; Fungi - 29996; Plants - 39571; Viruses - 5281; Other Eukaryotes - 79027 (source: NCBI BLink).  protein_id AT5G46730.1p  transcript_id AT5G46730.1  protein_id AT5G46730.1p  transcript_id AT5G46730.1  
At5g46740	chr5:018968010	0.0	C/18968010-18968492,18967803-18967923,18967607-18967717,18967341-18967513,18966906-18967235,18966705-18966827,18966061-18966601,18965774-18965845,18965410-18965654	AT5G46740.1  CDS  gene_syn MZA15.16, MZA15_16, UBIQUITIN-SPECIFIC PROTEASE 21, UBP21  gene UBP21  function Encodes a ubiquitin-specific protease.  go_component chloroplast|GO:0009507||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_function ubiquitin-specific protease activity|GO:0004843||ISS  product UBP21 (UBIQUITIN-SPECIFIC PROTEASE 21); ubiquitin thiolesterase/ ubiquitin-specific protease  note UBIQUITIN-SPECIFIC PROTEASE 21 (UBP21); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: UBP20 (UBIQUITIN-SPECIFIC PROTEASE 20); ubiquitin thiolesterase/ ubiquitin-specific protease (TAIR:AT4G17895.1); Has 5907 Blast hits to 5274 proteins in 191 species: Archae - 0; Bacteria - 4; Metazoa - 3357; Fungi - 808; Plants - 536; Viruses - 3; Other Eukaryotes - 1199 (source: NCBI BLink).  protein_id AT5G46740.1p  transcript_id AT5G46740.1  protein_id AT5G46740.1p  transcript_id AT5G46740.1  
At5g46750	chr5:018971749	0.0	C/18971749-18971817,18971530-18971648,18970900-18971323,18970554-18970814,18970336-18970461,18970149-18970250,18969950-18970057	AT5G46750.1  CDS  gene_syn AGD8, AGD9, ARF-GAP DOMAIN 8, ARF-GAP DOMAIN 9, MZA15.17, MZA15_17  gene AGD9  function A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.  go_process regulation of ARF GTPase activity|GO:0032312||IEA  go_function ARF GTPase activator activity|GO:0008060||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_function DNA binding|GO:0003677||ISS  product AGD9 (ARF-GAP DOMAIN 9); ARF GTPase activator/ DNA binding / zinc ion binding  note ARF-GAP DOMAIN 9 (AGD9); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: AGD8 (ARF-GAP DOMAIN 8); ARF GTPase activator/ DNA binding / zinc ion binding (TAIR:AT4G17890.1); Has 4986 Blast hits to 2870 proteins in 209 species: Archae - 0; Bacteria - 164; Metazoa - 1918; Fungi - 499; Plants - 299; Viruses - 0; Other Eukaryotes - 2106 (source: NCBI BLink).  protein_id AT5G46750.1p  transcript_id AT5G46750.1  protein_id AT5G46750.1p  transcript_id AT5G46750.1  
At5g46760	chr5:018974231	0.0	W/18974231-18976009	AT5G46760.1  CDS  gene_syn MZA15.18, MZA15_18  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT4G17880.1); Has 2727 Blast hits to 2407 proteins in 242 species: Archae - 0; Bacteria - 8; Metazoa - 397; Fungi - 67; Plants - 1804; Viruses - 2; Other Eukaryotes - 449 (source: NCBI BLink).  protein_id AT5G46760.1p  transcript_id AT5G46760.1  protein_id AT5G46760.1p  transcript_id AT5G46760.1  
At5g46770	chr5:018977494	0.0	W/18977494-18977895	AT5G46770.1  CDS  gene_syn MZA15.19, MZA15_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G46770.1p  transcript_id AT5G46770.1  protein_id AT5G46770.1p  transcript_id AT5G46770.1  
At5g46780	chr5:018979236	0.0	W/18979236-18979949	AT5G46780.1  CDS  gene_syn MZA15.20, MZA15_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product VQ motif-containing protein  note VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT2G35230.1); Has 4220 Blast hits to 3332 proteins in 353 species: Archae - 0; Bacteria - 235; Metazoa - 1741; Fungi - 535; Plants - 1009; Viruses - 213; Other Eukaryotes - 487 (source: NCBI BLink).  protein_id AT5G46780.1p  transcript_id AT5G46780.1  protein_id AT5G46780.1p  transcript_id AT5G46780.1  
At5g46780	chr5:018979236	0.0	W/18979236-18979949	AT5G46780.2  CDS  gene_syn MZA15.20, MZA15_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product VQ motif-containing protein  note VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT2G35230.1); Has 4220 Blast hits to 3332 proteins in 353 species: Archae - 0; Bacteria - 235; Metazoa - 1741; Fungi - 535; Plants - 1009; Viruses - 213; Other Eukaryotes - 487 (source: NCBI BLink).  protein_id AT5G46780.2p  transcript_id AT5G46780.2  protein_id AT5G46780.2p  transcript_id AT5G46780.2  
At5g46790	chr5:018984063	0.0	C/18984063-18984728	AT5G46790.1  CDS  gene_syn MZA15.21, MZA15_21  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17870.1); Has 179 Blast hits to 179 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 178; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G46790.1p  transcript_id AT5G46790.1  protein_id AT5G46790.1p  transcript_id AT5G46790.1  
At5g46795	chr5:018988091	0.0	C/18988091-18988168,18987836-18987994,18987570-18987734,18987055-18987231	AT5G46795.1  CDS  gene_syn MSP2, microspore-specific promoter 2  gene MSP2  go_component chloroplast|GO:0009507|18431481|IDA  go_process pollen development|GO:0009555|17184530|IEP  go_function molecular_function|GO:0003674||ND  product MSP2 (microspore-specific promoter 2)  note microspore-specific promoter 2 (MSP2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen development; LOCATED IN: chloroplast; EXPRESSED IN: leaf whorl, petal, flower; EXPRESSED DURING: J bicellular pollen stage, 4 anthesis, F microspore release stage, petal differentiation and expansion stage; Has 75 Blast hits to 48 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 56; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G46795.1p  transcript_id AT5G46795.1  protein_id AT5G46795.1p  transcript_id AT5G46795.1  
At5g46800	chr5:018989419	0.0	C/18989419-18989810,18988779-18989289	AT5G46800.1  CDS  gene_syn A BOUT DE SOUFFLE, BOU, MZA15.23, MZA15_23  gene BOU  function Seedling lethal mutation; Mitochondrial Carnitine Acyl Carrier-Like Protein  go_component mitochondrion|GO:0005739|15276431|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_function transporter activity|GO:0005215||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_component plastid|GO:0009536|16618929|IDA  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839|12631327|IDA  go_process mitochondrial transport|GO:0006839||ISS  go_process ornithine transport|GO:0015822|12631327|IGI  go_function binding|GO:0005488||ISS  product BOU (A BOUT DE SOUFFLE); binding / transporter  note A BOUT DE SOUFFLE (BOU); FUNCTIONS IN: binding, transporter activity; INVOLVED IN: transport, ornithine transport, mitochondrial transport; LOCATED IN: mitochondrion, mitochondrial inner membrane, chloroplast, plastid; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: MBAC1; L-histidine transmembrane transporter/ L-lysine transmembrane transporter/ L-ornithine transmembrane transporter/ arginine transmembrane transporter/ binding (TAIR:AT2G33820.1); Has 20146 Blast hits to 9967 proteins in 356 species: Archae - 0; Bacteria - 0; Metazoa - 10189; Fungi - 5506; Plants - 2772; Viruses - 0; Other Eukaryotes - 1679 (source: NCBI BLink).  protein_id AT5G46800.1p  transcript_id AT5G46800.1  protein_id AT5G46800.1p  transcript_id AT5G46800.1  
At5g46810	chr5:018991164	0.0	W/18991164-18991175,18991510-18991593,18991703-18991909,18992006-18992170,18992346-18992399,18992492-18992635,18992916-18993314	AT5G46810.1  CDS  gene_syn MZA15.24, MZA15_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46820.1); Has 379 Blast hits to 362 proteins in 16 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 10; Plants - 365; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G46810.1p  transcript_id AT5G46810.1  protein_id AT5G46810.1p  transcript_id AT5G46810.1  
At5g46820	chr5:018993633	0.0	W/18993633-18993662,18994847-18994930,18995040-18995222,18995318-18995482,18995638-18995691,18995820-18995963,18996274-18996672	AT5G46820.1  CDS  gene_syn MZA15.25, MZA15_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46810.1); Has 381 Blast hits to 364 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 10; Plants - 367; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G46820.1p  transcript_id AT5G46820.1  protein_id AT5G46820.1p  transcript_id AT5G46820.1  
At5g46830	chr5:019002719	0.0	W/19002719-19004254	AT5G46830.1  CDS  gene_syn MZA15.1  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: leaf lamina base, shoot, shoot apex; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: MYC2; DNA binding / transcription activator/ transcription factor (TAIR:AT1G32640.1); Has 1502 Blast hits to 1304 proteins in 134 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 34; Plants - 1451; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G46830.1p  transcript_id AT5G46830.1  protein_id AT5G46830.1p  transcript_id AT5G46830.1  
At5g46840	chr5:019005651	0.0	W/19005651-19006277,19006374-19006432,19006521-19006590,19006679-19006807,19006901-19007029,19007118-19007609	AT5G46840.1  CDS  gene_syn MZA15.26  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function nucleic acid binding|GO:0003676||ISS  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); Has 10345 Blast hits to 6884 proteins in 384 species: Archae - 15; Bacteria - 291; Metazoa - 4575; Fungi - 1048; Plants - 877; Viruses - 42; Other Eukaryotes - 3497 (source: NCBI BLink).  protein_id AT5G46840.1p  transcript_id AT5G46840.1  protein_id AT5G46840.1p  transcript_id AT5G46840.1  
At5g46840	chr5:019006062	0.0	W/19006062-19006277,19006374-19006432,19006521-19006590,19006679-19006807,19006901-19007029,19007118-19007609	AT5G46840.2  CDS  gene_syn MZA15.26  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function nucleic acid binding|GO:0003676||ISS  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); Has 2581 Blast hits to 2392 proteins in 210 species: Archae - 0; Bacteria - 30; Metazoa - 1392; Fungi - 417; Plants - 422; Viruses - 0; Other Eukaryotes - 320 (source: NCBI BLink).  protein_id AT5G46840.2p  transcript_id AT5G46840.2  protein_id AT5G46840.2p  transcript_id AT5G46840.2  
At5g46845	chr5:019009098	0.0	C/19009098-19009178	AT5G46845.1  miRNA  gene_syn MICRORNA 160, MICRORNA 160C, MIR160, MIR160C  gene MIR160C  function Encodes a microRNA that targets several ARF family members (ARF10, ARF16, ARF17). MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGCCUGGCUCCCUGUAUGCCA  go_process auxin mediated signaling pathway|GO:0009734|17672844|IMP  go_process abscisic acid mediated signaling|GO:0009738|17672844|IMP  go_process response to carbohydrate stimulus|GO:0009743|17672844|IMP  go_process fruit development|GO:0010154|17672844|IMP  go_process regulation of anthocyanin biosynthetic process|GO:0031540|17672844|IMP  go_process gene silencing by miRNA|GO:0035195|15851028|IDA  go_process leaf development|GO:0048366|17672844|IMP  go_process petal development|GO:0048441|17672844|IMP  go_process sepal development|GO:0048442|17672844|IMP  go_process developmental growth|GO:0048589|17672844|IMP  product MIR160C (MICRORNA 160C); miRNA  transcript_id AT5G46845.1  
At5g46850	chr5:019010714	0.0	W/19010714-19010782,19011032-19011401,19011480-19011634,19011714-19012010	AT5G46850.1  CDS  gene_syn MSD23.3, MSD23_3  go_component endoplasmic reticulum membrane|GO:0005789||IEA  go_process GPI anchor biosynthetic process|GO:0006506||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PIG-X/PBN1 (InterPro:IPR013233); Has 52 Blast hits to 52 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 4; Plants - 13; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G46850.1p  transcript_id AT5G46850.1  protein_id AT5G46850.1p  transcript_id AT5G46850.1  
At5g46860	chr5:019013611	0.0	C/19013611-19013795,19013389-19013482,19013170-19013309,19012950-19013012,19012679-19012836,19012499-19012599,19012342-19012407	AT5G46860.1  CDS  gene_syn ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ATSYP22, ATVAM3, SGR3, SHOOT GRAVITROPISM 3, SYNTAXIN OF PLANTS 22, SYP22, VACUOLAR MORPHOLOGY 3, VAM3  gene VAM3  function Syntaxin-related protein required for vacuolar assembly. A member of t-SNARE superfamily, homologous to yest Vam3p. Localized in the vacuolar membranes. The protein has a heptad repeat structure (residues164 220) in which hydrophobic amino acid residues appear at seven amino acid intervals. Such regions have a high potential to form an amphiphilic a-helix, intriguing for the intermolecular interactions by forming coiled-coil structure. AtVam3p has a highly hydrophobic segment at its C terminus thus implicating it to be a membrane protein while the rest of the sequence is hydrophilic.  go_component vacuole|GO:0005773|14760709|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plant-type vacuole|GO:0000325|16306062|IDA  go_component late endosome|GO:0005770|11115874|TAS  go_component plant-type vacuole membrane|GO:0009705|16935987|IDA  go_component plant-type vacuole membrane|GO:0009705|9305917|IDA  go_component trans-Golgi network transport vesicle|GO:0030140|11115874|TAS  go_process cellular morphogenesis during vegetative growth|GO:0000903|15937323|IMP  go_process intracellular protein transport|GO:0006886|11115874|TAS  go_process membrane fusion|GO:0006944|11115874|TAS  go_process vacuole organization|GO:0007033|9305917|IGI  go_process amyloplast organization|GO:0009660|12815100|IMP  go_process negative gravitropism|GO:0009959|8819871|IMP  go_process stomatal movement|GO:0010118|16244153|IMP  go_function SNAP receptor activity|GO:0005484|11115874|TAS  product VAM3; SNAP receptor  note VAM3; FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: in 7 processes; LOCATED IN: trans-Golgi network transport vesicle, late endosome, plant-type vacuole membrane, vacuole, plant-type vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptor (TAIR:AT4G17730.2); Has 1722 Blast hits to 1722 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 847; Fungi - 303; Plants - 293; Viruses - 0; Other Eukaryotes - 279 (source: NCBI BLink).  protein_id AT5G46860.1p  transcript_id AT5G46860.1  protein_id AT5G46860.1p  transcript_id AT5G46860.1  
At5g46870	chr5:019015486	0.0	W/19015486-19015491,19015867-19015970,19016049-19016124,19016205-19016285,19016370-19016990	AT5G46870.1  CDS  gene_syn MSD23.5, MSD23_5  go_process oxidation reduction|GO:0055114||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function nucleic acid binding|GO:0003676||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT4G17720.1); Has 263 Blast hits to 257 proteins in 70 species: Archae - 0; Bacteria - 8; Metazoa - 7; Fungi - 75; Plants - 139; Viruses - 7; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT5G46870.1p  transcript_id AT5G46870.1  protein_id AT5G46870.1p  transcript_id AT5G46870.1  
At5g46871	chr5:019018101	0.0	W/19018101-19018146,19018253-19018443	AT5G46871.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46874.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G46871.1p  transcript_id AT5G46871.1  protein_id AT5G46871.1p  transcript_id AT5G46871.1  
At5g46873	chr5:019021205	0.0	W/19021205-19021259,19021369-19021529	AT5G46873.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46877.1); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G46873.1p  transcript_id AT5G46873.1  protein_id AT5G46873.1p  transcript_id AT5G46873.1  
At5g46874	chr5:019022383	0.0	W/19022383-19022428,19022506-19022699	AT5G46874.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46871.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G46874.1p  transcript_id AT5G46874.1  protein_id AT5G46874.1p  transcript_id AT5G46874.1  
At5g46875	chr5:019024403	0.0	W/19024403-19024970	AT5G46875.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to nucleic acid binding / ribonuclease H [Arabidopsis thaliana] (TAIR:AT1G17390.1); similar to Ribonuclease H [Medicago truncatula] (GB:ABE79138.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)  
At5g46877	chr5:019025895	0.0	W/19025895-19025949,19026061-19026269	AT5G46877.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46873.1); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G46877.1p  transcript_id AT5G46877.1  protein_id AT5G46877.1p  transcript_id AT5G46877.1  
At5g46880	chr5:019031540	0.0	W/19031540-19031686,19031808-19032043,19032477-19032594,19032804-19032986,19033210-19033740,19033819-19033917,19034021-19034393,19034466-19034734,19034808-19034903,19034978-19035388	AT5G46880.1  CDS  gene_syn HB-7, HDG5, HOMEOBOX-7, HOMEODOMAIN GLABROUS 5, MQD22.1, MQD22_1  gene HB-7  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product HB-7 (HOMEOBOX-7); DNA binding / transcription factor  note HOMEOBOX-7 (HB-7); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: HDG4 (HOMEODOMAIN GLABROUS 4); DNA binding / transcription factor (TAIR:AT4G17710.1); Has 10495 Blast hits to 10462 proteins in 516 species: Archae - 0; Bacteria - 2; Metazoa - 8562; Fungi - 221; Plants - 1530; Viruses - 0; Other Eukaryotes - 180 (source: NCBI BLink).  protein_id AT5G46880.1p  transcript_id AT5G46880.1  protein_id AT5G46880.1p  transcript_id AT5G46880.1  
At5g46890	chr5:019036437	0.0	C/19036437-19036820	AT5G46890.1  CDS  gene_syn MQD22.2, MQD22_2  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT5G46900.1); Has 523 Blast hits to 519 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 523; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G46890.1p  transcript_id AT5G46890.1  protein_id AT5G46890.1p  transcript_id AT5G46890.1  
At5g46900	chr5:019039954	0.0	C/19039954-19040337	AT5G46900.1  CDS  gene_syn MQD22.3, MQD22_3  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT5G46890.1); Has 532 Blast hits to 528 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 532; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G46900.1p  transcript_id AT5G46900.1  protein_id AT5G46900.1p  transcript_id AT5G46900.1  
At5g46910	chr5:019047780	0.0	W/19047780-19047927,19048149-19048305,19048385-19048604,19048739-19048792,19048884-19048963,19049069-19049346,19049439-19049834,19049919-19050259,19050342-19050578,19050668-19050880	AT5G46910.1  CDS  gene_syn MQD22.4, MQD22_4  go_component nucleus|GO:0005634||IEA  go_process response to chitin|GO:0010200|17722694|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor jumonji (jmj) family protein  note transcription factor jumonji (jmj) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to chitin, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, C5HC2-type (InterPro:IPR004198), Transcription factor jumonji (InterPro:IPR013129), Transcription factor jumonji, JmjN (InterPro:IPR003349); BEST Arabidopsis thaliana protein match is: REF6 (RELATIVE OF EARLY FLOWERING 6); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT3G48430.1); Has 1426 Blast hits to 1059 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 900; Fungi - 290; Plants - 131; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT5G46910.1p  transcript_id AT5G46910.1  protein_id AT5G46910.1p  transcript_id AT5G46910.1  
At5g46915	chr5:019053099	0.0	C/19053099-19053200,19052951-19052992,19052529-19052580,19052404-19052487,19052277-19052333,19051933-19052195,19051568-19051834	AT5G46915.1  CDS  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcriptional factor B3 family protein  note transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT2G16210.1); Has 27 Blast hits to 27 proteins in 3 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G46915.1p  transcript_id AT5G46915.1  protein_id AT5G46915.1p  transcript_id AT5G46915.1  
At5g46920	chr5:019053668	0.0	W/19053668-19055875	AT5G46920.1  CDS  gene_syn MQD22.6, MQD22_6  go_process RNA-dependent DNA replication|GO:0006278||IEA  go_process RNA splicing|GO:0008380||IEA  go_function RNA binding|GO:0003723||IEA  go_function RNA-directed DNA polymerase activity|GO:0003964||IEA  go_process RNA-dependent DNA replication|GO:0006278||ISS  go_process RNA splicing|GO:0008380||ISS  go_function RNA binding|GO:0003723||ISS  go_function RNA-directed DNA polymerase activity|GO:0003964||ISS  product intron maturase, type II family protein  note intron maturase, type II family protein; FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity; INVOLVED IN: RNA-dependent DNA replication, RNA splicing; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Intron maturase, type II (InterPro:IPR000442), RNA-directed DNA polymerase (reverse transcriptase) (InterPro:IPR000477); BEST Arabidopsis thaliana protein match is: intron maturase, type II family protein (TAIR:AT1G30010.1); Has 2187 Blast hits to 2184 proteins in 368 species: Archae - 10; Bacteria - 1945; Metazoa - 3; Fungi - 34; Plants - 73; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT5G46920.1p  transcript_id AT5G46920.1  protein_id AT5G46920.1p  transcript_id AT5G46920.1  
At5g46930	chr5:019056655	0.0	C/19056655-19057191	AT5G46930.1  CDS  gene_syn MQD22.7, MQD22_7  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT5G46970.1); Has 88 Blast hits to 88 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G46930.1p  transcript_id AT5G46930.1  protein_id AT5G46930.1p  transcript_id AT5G46930.1  
At5g46940	chr5:019058230	0.0	C/19058230-19058760	AT5G46940.1  CDS  gene_syn MQD22.8, MQD22_8  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT5G46930.1); Has 149 Blast hits to 149 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G46940.1p  transcript_id AT5G46940.1  protein_id AT5G46940.1p  transcript_id AT5G46940.1  
At5g46950	chr5:019059565	0.0	C/19059565-19060089	AT5G46950.1  CDS  gene_syn MQD22.9, MQD22_9  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT5G46960.1); Has 111 Blast hits to 111 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 111; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G46950.1p  transcript_id AT5G46950.1  protein_id AT5G46950.1p  transcript_id AT5G46950.1  
At5g46960	chr5:019062220	0.0	C/19062220-19062744	AT5G46960.1  CDS  gene_syn MQD22.10, MQD22_10  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT5G46950.1); Has 112 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 112; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G46960.1p  transcript_id AT5G46960.1  protein_id AT5G46960.1p  transcript_id AT5G46960.1  
At5g46970	chr5:019063918	0.0	C/19063918-19064412	AT5G46970.1  CDS  gene_syn MQD22.11, MQD22_11  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT5G46930.1); Has 92 Blast hits to 92 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G46970.1p  transcript_id AT5G46970.1  protein_id AT5G46970.1p  transcript_id AT5G46970.1  
At5g46980	chr5:019065453	0.0	C/19065453-19066007	AT5G46980.1  CDS  gene_syn MQD22.12, MQD22_12  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT1G54620.1); Has 38 Blast hits to 38 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G46980.1p  transcript_id AT5G46980.1  protein_id AT5G46980.1p  transcript_id AT5G46980.1  
At5g46990	chr5:019067692	0.0	C/19067692-19068255	AT5G46990.1  CDS  gene_syn MQD22.13, MQD22_13  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT5G46980.1); Has 35 Blast hits to 35 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G46990.1p  transcript_id AT5G46990.1  protein_id AT5G46990.1p  transcript_id AT5G46990.1  
At5g47000	chr5:019069171	0.0	C/19069171-19070175	AT5G47000.1  CDS  gene_syn MQD22.14, MQD22_14  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||ISS  go_function xylan 1,4-beta-xylosidase activity|GO:0009044|15517348|TAS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: xylan 1,4-beta-xylosidase activity, peroxidase activity; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT4G17690.1); Has 3176 Blast hits to 3160 proteins in 242 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 301; Plants - 2821; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT5G47000.1p  transcript_id AT5G47000.1  protein_id AT5G47000.1p  transcript_id AT5G47000.1  
At5g47010	chr5:019072009	0.0	W/19072009-19072545,19072737-19072988,19073064-19073234,19073377-19073427,19073520-19073612,19073682-19073777,19073874-19073924,19074005-19074123,19074224-19074332,19074499-19074621,19074702-19074773,19074925-19074996,19075101-19075167,19075335-19075477,19075559-19075630,19075706-19075834,19075941-19076096,19076220-19076333,19076414-19076512,19076587-19076664,19076801-19076935,19077079-19077153,19077236-19077344,19077431-19077774,19077890-19077937,19078033-19078104,19078229-19078360,19078445-19078561,19078728-19078856	AT5G47010.1  CDS  gene_syn ATUPF1, LBA1, LOW-LEVEL BETA-AMYLASE 1, MQD22.15, MQD22_15, UPF1  gene LBA1  function Required for nonsense-mediated mRNA decay. Involved in RNA interference. lba1 mutants has reduced sugar-induced expression of Atb- amylase, is hypersensitive to glucose and abscisic acid and resistant to mannose, and shows early flowering, short day-sensitive growth, and seed germination phenotypes.  go_component plasma membrane|GO:0005886|17317660|IDA  go_function DNA binding|GO:0003677||IEA  go_function ATP binding|GO:0005524||IEA  go_function hydrolase activity|GO:0016787||IEA  go_process nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|GO:0000184|16813578|IGI  go_process response to sucrose stimulus|GO:0009744|9161039|IGI  go_process sugar mediated signaling|GO:0010182|16740149|IMP  go_process RNA interference|GO:0016246|16813578|IGI  go_function RNA helicase activity|GO:0003724||ISS  product LBA1 (LOW-LEVEL BETA-AMYLASE 1); ATP binding / DNA binding / RNA helicase/ hydrolase  note LOW-LEVEL BETA-AMYLASE 1 (LBA1); FUNCTIONS IN: hydrolase activity, RNA helicase activity, DNA binding, ATP binding; INVOLVED IN: sugar mediated signaling, RNA interference, nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, response to sucrose stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT2G03270.1); Has 6959 Blast hits to 5988 proteins in 790 species: Archae - 119; Bacteria - 1492; Metazoa - 2765; Fungi - 910; Plants - 424; Viruses - 129; Other Eukaryotes - 1120 (source: NCBI BLink).  protein_id AT5G47010.1p  transcript_id AT5G47010.1  protein_id AT5G47010.1p  transcript_id AT5G47010.1  
At5g47020	chr5:019082005	0.0	W/19082005-19082766,19083017-19083128,19083391-19083599,19083891-19084010,19084110-19084238,19084319-19084444,19084612-19084667,19084752-19084851,19085169-19085286,19085454-19085663,19085806-19086130,19086435-19086528,19086751-19086859,19086957-19087219,19087334-19087458,19087699-19087933,19088012-19088200,19088284-19088570,19088674-19088881,19088975-19089214,19089293-19089369,19089641-19089800	AT5G47020.1  CDS  gene_syn MQD22.16, MQD22_16  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT5G11700.2); Has 13676 Blast hits to 3712 proteins in 430 species: Archae - 4; Bacteria - 9087; Metazoa - 1586; Fungi - 187; Plants - 1289; Viruses - 133; Other Eukaryotes - 1390 (source: NCBI BLink).  protein_id AT5G47020.1p  transcript_id AT5G47020.1  protein_id AT5G47020.1p  transcript_id AT5G47020.1  
At5g47030	chr5:019090384	0.0	W/19090384-19090650,19091690-19092034	AT5G47030.1  CDS  function Encodes the mitochondrial ATP synthase subunit delta.  go_component mitochondrion|GO:0005739|15276431|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)|GO:0000275|12681508|IDA  go_component mitochondrion|GO:0005739|11743114|IDA  go_component mitochondrion|GO:0005739|12681508|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial proton-transporting ATP synthase complex|GO:0005753||ISS  go_function hydrogen ion transporting ATP synthase activity, rotational mechanism|GO:0046933||ISS  product ATP synthase delta  chain, mitochondrial  note ATP synthase delta  chain, mitochondrial; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism; INVOLVED IN: response to salt stress; LOCATED IN: mitochondrion, mitochondrial proton-transporting ATP synthase complex, mitochondrial proton-transporting ATP synthase complex, catalytic core F(1); EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, delta/epsilon subunit (InterPro:IPR001469); Has 3756 Blast hits to 3756 proteins in 1111 species: Archae - 0; Bacteria - 1600; Metazoa - 132; Fungi - 89; Plants - 440; Viruses - 0; Other Eukaryotes - 1495 (source: NCBI BLink).  protein_id AT5G47030.1p  transcript_id AT5G47030.1  protein_id AT5G47030.1p  transcript_id AT5G47030.1  
At5g47040	chr5:019098572	0.0	C/19098572-19098678,19098193-19098305,19098007-19098112,19097680-19097849,19097227-19097318,19096801-19096980,19096632-19096715,19096409-19096536,19096105-19096306,19095813-19096019,19095377-19095507,19094944-19095157,19094550-19094852,19094214-19094408,19093879-19094124,19093654-19093755,19093356-19093442	AT5G47040.1  CDS  gene_syn LON PROTEASE 2, LON2, MQD22.18, MQD22_18  gene LON2  function Encodes a member of the Lon protease-like proteins (Lon1/At5g26860, Lon2/At5g47040, Lon3/At3g05780, Lon4/At3g05790). Lon is a multifunctional ATP-dependent protease which exists in bacteria, archaea and within organelles in eukaryotic cells. Lon proteases are responsible for the degradation of abnormal, damaged and unstable proteins.  go_process proteolysis|GO:0006508||IEA  go_process ATP-dependent proteolysis|GO:0006510||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP-dependent peptidase activity|GO:0004176||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATP-dependent peptidase activity|GO:0004176||ISS  go_function ATP binding|GO:0005524||ISS  go_function serine-type peptidase activity|GO:0008236||ISS  product LON2 (LON PROTEASE 2); ATP binding / ATP-dependent peptidase/ nucleoside-triphosphatase/ nucleotide binding / serine-type endopeptidase/ serine-type peptidase  note LON PROTEASE 2 (LON2); FUNCTIONS IN: in 6 functions; INVOLVED IN: proteolysis, ATP-dependent proteolysis; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Peptidase S16, active site (InterPro:IPR008268), Peptidase S16, ATP-dependent protease La (InterPro:IPR004815), Peptidase S16, lon N-terminal (InterPro:IPR003111), Peptidase S16, lon C-terminal (InterPro:IPR008269), ATPase, AAA+ type, core (InterPro:IPR003593), Regulator of G protein signalling superfamily (InterPro:IPR016137), Peptidase S16, Lon protease, C-terminal region (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: LON1 (LON PROTEASE 1); ATP binding / ATP-dependent peptidase/ serine-type peptidase (TAIR:AT5G26860.1); Has 15493 Blast hits to 15417 proteins in 1626 species: Archae - 297; Bacteria - 8577; Metazoa - 421; Fungi - 276; Plants - 148; Viruses - 13; Other Eukaryotes - 5761 (source: NCBI BLink).  protein_id AT5G47040.1p  transcript_id AT5G47040.1  protein_id AT5G47040.1p  transcript_id AT5G47040.1  
At5g47050	chr5:019106612	0.0	W/19106612-19106717,19106817-19107082,19107330-19107860	AT5G47050.1  CDS  gene_syn MQD22.19, MQD22_19  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G17680.1); Has 786 Blast hits to 785 proteins in 134 species: Archae - 2; Bacteria - 8; Metazoa - 437; Fungi - 18; Plants - 230; Viruses - 32; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT5G47050.1p  transcript_id AT5G47050.1  protein_id AT5G47050.1p  transcript_id AT5G47050.1  
At5g47060	chr5:019116843	0.0	W/19116843-19117195,19117459-19117639	AT5G47060.1  CDS  gene_syn MQD22.20, MQD22_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product senescence-associated protein-related  note senescence-associated protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: senescence-associated protein-related (TAIR:AT4G17670.1); Has 303 Blast hits to 303 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 289; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G47060.1p  transcript_id AT5G47060.1  protein_id AT5G47060.1p  transcript_id AT5G47060.1  
At5g47070	chr5:019120142	0.0	C/19120142-19120528,19119598-19119849,19119260-19119382,19118683-19119153	AT5G47070.1  CDS  gene_syn K14A3.2, K14A3_2  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT4G17660.1); Has 85578 Blast hits to 84517 proteins in 3070 species: Archae - 57; Bacteria - 8047; Metazoa - 37348; Fungi - 6649; Plants - 18542; Viruses - 344; Other Eukaryotes - 14591 (source: NCBI BLink).  protein_id AT5G47070.1p  transcript_id AT5G47070.1  protein_id AT5G47070.1p  transcript_id AT5G47070.1  
At5g47075	chr5:019122781	0.0	C/19122781-19122826,19122503-19122684	AT5G47075.1  CDS  gene_syn LCR20, Low-molecular-weight cysteine-rich 20  gene LCR20  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR20 (Low-molecular-weight cysteine-rich 20)  note Low-molecular-weight cysteine-rich 20 (LCR20); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); BEST Arabidopsis thaliana protein match is: LCR6 (Low-molecular-weight cysteine-rich 6) (TAIR:AT5G47077.1); Has 21 Blast hits to 21 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G47075.1p  transcript_id AT5G47075.1  protein_id AT5G47075.1p  transcript_id AT5G47075.1  
At5g47077	chr5:019123734	0.0	C/19123734-19123779,19123506-19123687	AT5G47077.1  CDS  gene_syn LCR6, Low-molecular-weight cysteine-rich 6  gene LCR6  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR6 (Low-molecular-weight cysteine-rich 6)  note Low-molecular-weight cysteine-rich 6 (LCR6); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); BEST Arabidopsis thaliana protein match is: LCR20 (Low-molecular-weight cysteine-rich 20) (TAIR:AT5G47075.1); Has 29 Blast hits to 29 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G47077.1p  transcript_id AT5G47077.1  protein_id AT5G47077.1p  transcript_id AT5G47077.1  
At5g47080	chr5:019126160	0.0	C/19126160-19126397,19125770-19125979,19125516-19125625,19125231-19125434	AT5G47080.3  CDS  gene_syn CASEIN KINASE II BETA CHAIN 1, CASEIN KINASE II BETA SUBUNIT CKB1, CKB1, K14A3.3, K14A3_3  gene CKB1  function Regulatory subunit beta of casein kinase II. purified CKB1 resulted in up 100-fold stimulation of casein kinase activity compared with the CKA1 activity alone. Forms a tetrameric complex with CKA1 (CKA1(2)CKB1(2)).  go_component protein kinase CK2 complex|GO:0005956|7696877|IDA  go_component protein kinase CK2 complex|GO:0005956||ISS  go_process protein amino acid phosphorylation|GO:0006468|7696877|IDA  go_function protein kinase regulator activity|GO:0019887|7696877|IDA  go_function protein kinase regulator activity|GO:0019887|8061317|IGI  product CKB1; protein kinase regulator  note CKB1; FUNCTIONS IN: protein kinase regulator activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: protein kinase CK2 complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Casein kinase II, regulatory subunit, alpha-helical (InterPro:IPR016149), Casein kinase II, regulatory subunit, beta-sheet (InterPro:IPR016150), Casein kinase II, regulatory subunit (InterPro:IPR000704); BEST Arabidopsis thaliana protein match is: CKB2; protein kinase CK2 regulator (TAIR:AT4G17640.1); Has 851 Blast hits to 849 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 371; Fungi - 184; Plants - 110; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).  protein_id AT5G47080.3p  transcript_id AT5G47080.3  protein_id AT5G47080.3p  transcript_id AT5G47080.3  
At5g47080	chr5:019126160	0.0	C/19126160-19126397,19125770-19125988,19125516-19125625,19125231-19125434	AT5G47080.2  CDS  gene_syn CASEIN KINASE II BETA CHAIN 1, CASEIN KINASE II BETA SUBUNIT CKB1, CKB1, K14A3.3, K14A3_3  gene CKB1  function Regulatory subunit beta of casein kinase II. purified CKB1 resulted in up 100-fold stimulation of casein kinase activity compared with the CKA1 activity alone. Forms a tetrameric complex with CKA1 (CKA1(2)CKB1(2)).  go_component protein kinase CK2 complex|GO:0005956|7696877|IDA  go_component protein kinase CK2 complex|GO:0005956||ISS  go_process protein amino acid phosphorylation|GO:0006468|7696877|IDA  go_function protein kinase regulator activity|GO:0019887|7696877|IDA  go_function protein kinase regulator activity|GO:0019887|8061317|IGI  product CKB1; protein kinase regulator  note CKB1; FUNCTIONS IN: protein kinase regulator activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: protein kinase CK2 complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Casein kinase II, regulatory subunit, alpha-helical (InterPro:IPR016149), Casein kinase II, regulatory subunit, beta-sheet (InterPro:IPR016150), Casein kinase II, regulatory subunit (InterPro:IPR000704); BEST Arabidopsis thaliana protein match is: CKB2; protein kinase CK2 regulator (TAIR:AT4G17640.1); Has 851 Blast hits to 849 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 371; Fungi - 184; Plants - 110; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).  protein_id AT5G47080.2p  transcript_id AT5G47080.2  protein_id AT5G47080.2p  transcript_id AT5G47080.2  
At5g47080	chr5:019126160	0.0	C/19126160-19126397,19125770-19125988,19125516-19125625,19125269-19125434,19124969-19125099	AT5G47080.1  CDS  gene_syn CASEIN KINASE II BETA CHAIN 1, CASEIN KINASE II BETA SUBUNIT CKB1, CKB1, K14A3.3, K14A3_3  gene CKB1  function Regulatory subunit beta of casein kinase II. purified CKB1 resulted in up 100-fold stimulation of casein kinase activity compared with the CKA1 activity alone. Forms a tetrameric complex with CKA1 (CKA1(2)CKB1(2)).  go_component protein kinase CK2 complex|GO:0005956|7696877|IDA  go_component protein kinase CK2 complex|GO:0005956||ISS  go_process protein amino acid phosphorylation|GO:0006468|7696877|IDA  go_function protein kinase regulator activity|GO:0019887|7696877|IDA  go_function protein kinase regulator activity|GO:0019887|8061317|IGI  product CKB1; protein kinase regulator  note CKB1; FUNCTIONS IN: protein kinase regulator activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: protein kinase CK2 complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Casein kinase II, regulatory subunit, alpha-helical (InterPro:IPR016149), Casein kinase II, regulatory subunit, beta-sheet (InterPro:IPR016150), Casein kinase II, regulatory subunit (InterPro:IPR000704); BEST Arabidopsis thaliana protein match is: CKB2; protein kinase CK2 regulator (TAIR:AT4G17640.1); Has 854 Blast hits to 852 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 373; Fungi - 185; Plants - 110; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).  protein_id AT5G47080.1p  transcript_id AT5G47080.1  protein_id AT5G47080.1p  transcript_id AT5G47080.1  
At5g47090	chr5:019127274	0.0	W/19127274-19127469,19127757-19128493	AT5G47090.1  CDS  gene_syn K14A3.4, K14A3_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2052, coiled-coil (InterPro:IPR018613); Has 8880 Blast hits to 4216 proteins in 240 species: Archae - 24; Bacteria - 100; Metazoa - 5830; Fungi - 499; Plants - 280; Viruses - 264; Other Eukaryotes - 1883 (source: NCBI BLink).  protein_id AT5G47090.1p  transcript_id AT5G47090.1  protein_id AT5G47090.1p  transcript_id AT5G47090.1  
At5g47100	chr5:019131649	0.0	C/19131649-19131727,19131183-19131265,19130800-19130859,19130596-19130704,19130450-19130502,19130248-19130328,19130047-19130159,19129896-19129959	AT5G47100.1  CDS  gene_syn CALCINEURIN B-LIKE PROTEIN 9, CBL9, K14A3.5, K14A3_5  gene CBL9  function member of AtCBLs (Calcineurin B-like Calcium Sensor Proteins. CBL9 interacts with and targets CIPK23 to the plasma membrane in vivo.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component plasma membrane|GO:0005886|17092313|IDA  go_component plasma membrane|GO:0005886|17922773|IDA  go_component protein serine/threonine phosphatase complex|GO:0008287||ISS  go_process response to stress|GO:0006950|10200328|IPI  go_process response to water deprivation|GO:0009414|17922773|IMP  go_process potassium ion import|GO:0010107|17922773|IGI  go_process stomatal movement|GO:0010118|17922773|IGI  go_function calcium ion binding|GO:0005509|10200328|IEP  go_function calcium ion binding|GO:0005509|11230129|ISS  go_function calcium ion binding|GO:0005509||ISS  product CBL9; calcium ion binding  note CBL9; FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to water deprivation, N-terminal protein myristoylation, potassium ion import, stomatal movement, response to stress; LOCATED IN: plasma membrane, protein serine/threonine phosphatase complex; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), Recoverin (InterPro:IPR001125), Calcineurin B protein (InterPro:IPR015757), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CBL1 (CALCINEURIN B-LIKE PROTEIN 1); calcium ion binding (TAIR:AT4G17615.1); Has 6509 Blast hits to 6501 proteins in 710 species: Archae - 0; Bacteria - 10; Metazoa - 3462; Fungi - 923; Plants - 1372; Viruses - 0; Other Eukaryotes - 742 (source: NCBI BLink).  protein_id AT5G47100.1p  transcript_id AT5G47100.1  protein_id AT5G47100.1p  transcript_id AT5G47100.1  
At5g47110	chr5:019134854	0.0	C/19134854-19135238,19134558-19134695,19134218-19134471	AT5G47110.1  CDS  gene_syn K14A3.6, K14A3_6  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process photosynthesis, light harvesting|GO:0009765||ISS  go_function molecular_function|GO:0003674||ND  product lil3 protein, putative  note lil3 protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthesis, light harvesting; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: LIL3:1; transcription factor (TAIR:AT4G17600.1); Has 51 Blast hits to 51 proteins in 19 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G47110.1p  transcript_id AT5G47110.1  protein_id AT5G47110.1p  transcript_id AT5G47110.1  
At5g47120	chr5:019136071	0.0	W/19136071-19136184,19136582-19136725,19136824-19136915,19137016-19137202,19137295-19137450,19137535-19137585	AT5G47120.1  CDS  gene_syn ARABIDOPSIS BAX INHIBITOR 1, ATBI-1, ATBI1, BAX INHIBITOR 1, BI-1, K14A3.7, K14A3_7  gene ATBI1  function Encodes BI-1, a homolog of mammalian Bax inhibitor 1. Functions as an attenuator of biotic and abiotic types of cell death. Bax-induced cell death can be downregulated by ectopically expressing AtBI in planta.  go_component nuclear envelope|GO:0005635|11852101|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component endoplasmic reticulum|GO:0005783|11852101|IDA  go_process very-long-chain fatty acid metabolic process|GO:0000038|19054355|IMP  go_process apoptosis|GO:0006915||ISS  go_process anti-apoptosis|GO:0006916|11593047|IMP  go_process ER overload response|GO:0006983|18039663|IMP  go_process response to wounding|GO:0009611|10758491|IEP  go_process defense response to bacterium|GO:0042742|10758491|IEP  go_process regulation of apoptosis|GO:0042981||ISS  go_process negative regulation of programmed cell death|GO:0043069|16507080|IMP  product ATBI1 (BAX INHIBITOR 1)  note BAX INHIBITOR 1 (ATBI1); INVOLVED IN: in 8 processes; LOCATED IN: nuclear envelope, endoplasmic reticulum, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0005 (InterPro:IPR006214), Bax inhibitor 1, conserved site (InterPro:IPR006213); BEST Arabidopsis thaliana protein match is: Bax inhibitor-1 family protein / BI-1 family protein (TAIR:AT4G17580.1); Has 1385 Blast hits to 1385 proteins in 499 species: Archae - 0; Bacteria - 621; Metazoa - 355; Fungi - 92; Plants - 93; Viruses - 10; Other Eukaryotes - 214 (source: NCBI BLink).  protein_id AT5G47120.1p  transcript_id AT5G47120.1  protein_id AT5G47120.1p  transcript_id AT5G47120.1  
At5g47130	chr5:019141016	0.0	W/19141016-19141105,19141183-19141274,19141456-19141633,19141723-19141878,19141964-19142011	AT5G47130.1  CDS  gene_syn K14A3.8, K14A3_8  go_component integral to membrane|GO:0016021||IEA  go_process negative regulation of apoptosis|GO:0043066||IEA  go_process anti-apoptosis|GO:0006916||ISS  product Bax inhibitor-1 family / BI-1 family  note Bax inhibitor-1 family / BI-1 family; INVOLVED IN: negative regulation of apoptosis, anti-apoptosis; LOCATED IN: integral to membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0005 (InterPro:IPR006214), Bax inhibitor 1, conserved site (InterPro:IPR006213); BEST Arabidopsis thaliana protein match is: ATBI1 (BAX INHIBITOR 1) (TAIR:AT5G47120.1); Has 811 Blast hits to 810 proteins in 306 species: Archae - 0; Bacteria - 340; Metazoa - 306; Fungi - 23; Plants - 70; Viruses - 3; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT5G47130.1p  transcript_id AT5G47130.1  protein_id AT5G47130.1p  transcript_id AT5G47130.1  
At5g47140	chr5:019145108	0.0	W/19145108-19145147,19145505-19146186,19146263-19146320,19146412-19146515,19146604-19146790,19146872-19146992,19147083-19147303	AT5G47140.1  CDS  gene_syn K14A3.9, K14A3_9  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product zinc finger (GATA type) family protein  note zinc finger (GATA type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: zinc finger (GATA type) family protein (TAIR:AT4G17570.1); Has 552 Blast hits to 526 proteins in 77 species: Archae - 0; Bacteria - 14; Metazoa - 5; Fungi - 106; Plants - 397; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT5G47140.1p  transcript_id AT5G47140.1  protein_id AT5G47140.1p  transcript_id AT5G47140.1  
At5g47150	chr5:019150807	0.0	W/19150807-19151793	AT5G47150.1  CDS  gene_syn K14A3.10, K14A3_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product YDG/SRA domain-containing protein  note YDG/SRA domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: SRA-YDG (InterPro:IPR003105); BEST Arabidopsis thaliana protein match is: YDG/SRA domain-containing protein (TAIR:AT5G47160.1); Has 405 Blast hits to 403 proteins in 44 species: Archae - 0; Bacteria - 8; Metazoa - 153; Fungi - 6; Plants - 208; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT5G47150.1p  transcript_id AT5G47150.1  protein_id AT5G47150.1p  transcript_id AT5G47150.1  
At5g47160	chr5:019156731	0.0	W/19156731-19157978	AT5G47160.1  CDS  gene_syn MQL5.1, MQL5_1  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product YDG/SRA domain-containing protein  note YDG/SRA domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: SRA-YDG (InterPro:IPR003105); BEST Arabidopsis thaliana protein match is: YDG/SRA domain-containing protein (TAIR:AT5G47150.1); Has 404 Blast hits to 402 proteins in 44 species: Archae - 0; Bacteria - 8; Metazoa - 152; Fungi - 6; Plants - 207; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT5G47160.1p  transcript_id AT5G47160.1  protein_id AT5G47160.1p  transcript_id AT5G47160.1  
At5g47170	chr5:019158508	0.0	C/19158508-19158960	AT5G47170.1  CDS  gene_syn MQL5.2, MQL5_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, leaf whorl, embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G01130.1); Has 9 Blast hits to 9 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G47170.1p  transcript_id AT5G47170.1  protein_id AT5G47170.1p  transcript_id AT5G47170.1  
At5g47175	chr5:019160367	0.0	C/19160367-19160412,19160066-19160256	AT5G47175.1  CDS  gene_syn LCR3, Low-molecular-weight cysteine-rich 3  gene LCR3  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||IEA  product LCR3 (Low-molecular-weight cysteine-rich 3)  note Low-molecular-weight cysteine-rich 3 (LCR3); INVOLVED IN: defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: LCR20 (Low-molecular-weight cysteine-rich 20) (TAIR:AT5G47075.1); Has 32 Blast hits to 32 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G47175.1p  transcript_id AT5G47175.1  protein_id AT5G47175.1p  transcript_id AT5G47175.1  
At5g47180	chr5:019163205	0.0	C/19163205-19163265,19162782-19162852,19162593-19162674,19162392-19162507,19162158-19162289,19161659-19161727,19161384-19161515	AT5G47180.1  CDS  gene_syn MQL5.3, MQL5_3  go_component plasma membrane|GO:0005886|17317660|IDA  go_function structural molecule activity|GO:0005198||IEA  go_function structural molecule activity|GO:0005198||ISS  product vesicle-associated membrane family protein / VAMP family protein  note vesicle-associated membrane family protein / VAMP family protein; FUNCTIONS IN: structural molecule activity; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Vesicle-associated membrane protein (InterPro:IPR016763); BEST Arabidopsis thaliana protein match is: VAP (VESICLE ASSOCIATED PROTEIN); protein binding (TAIR:AT3G60600.1); Has 746 Blast hits to 741 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 359; Fungi - 101; Plants - 222; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT5G47180.1p  transcript_id AT5G47180.1  protein_id AT5G47180.1p  transcript_id AT5G47180.1  
At5g47180	chr5:019163205	0.0	C/19163205-19163265,19162782-19162852,19162593-19162674,19162392-19162507,19162158-19162289,19161659-19161727,19161384-19161515	AT5G47180.2  CDS  gene_syn MQL5.3, MQL5_3  go_component plasma membrane|GO:0005886|17317660|IDA  go_function structural molecule activity|GO:0005198||IEA  go_function structural molecule activity|GO:0005198||ISS  product vesicle-associated membrane family protein / VAMP family protein  note vesicle-associated membrane family protein / VAMP family protein; FUNCTIONS IN: structural molecule activity; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Vesicle-associated membrane protein (InterPro:IPR016763); BEST Arabidopsis thaliana protein match is: VAP (VESICLE ASSOCIATED PROTEIN); protein binding (TAIR:AT3G60600.1); Has 746 Blast hits to 741 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 359; Fungi - 101; Plants - 222; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT5G47180.2p  transcript_id AT5G47180.2  protein_id AT5G47180.2p  transcript_id AT5G47180.2  
At5g47190	chr5:019166035	0.0	C/19166035-19166064,19165616-19165945,19165358-19165444,19165136-19165269,19164432-19164540	AT5G47190.1  CDS  gene_syn MQL5.4, MQL5_4  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L19 family protein  note ribosomal protein L19 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, chloroplast stroma, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L19 (InterPro:IPR001857), Ribosomal protein L19, conserved site (InterPro:IPR018257); BEST Arabidopsis thaliana protein match is: ribosomal protein L19 family protein (TAIR:AT4G17560.1); Has 5328 Blast hits to 5328 proteins in 1493 species: Archae - 0; Bacteria - 2922; Metazoa - 95; Fungi - 50; Plants - 97; Viruses - 0; Other Eukaryotes - 2164 (source: NCBI BLink).  protein_id AT5G47190.1p  transcript_id AT5G47190.1  protein_id AT5G47190.1p  transcript_id AT5G47190.1  
At5g47200	chr5:019167029	0.0	W/19167029-19167042,19167466-19167538,19167761-19167808,19167893-19167940,19168037-19168108,19168196-19168351,19168446-19168549,19168625-19168718	AT5G47200.1  CDS  gene_syn ARABIDOPSIS RAB GTPASE HOMOLOG D2B, ATRAB1A, ATRABD2B, MQL5.5, MQL5_5  gene ATRAB1A  go_component plasma membrane|GO:0005886|15060130|IDA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product ATRAB1A; GTP binding  note ATRAB1A; FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: ATRAB1C; GTP binding (TAIR:AT4G17530.1); Has 23714 Blast hits to 23664 proteins in 649 species: Archae - 17; Bacteria - 107; Metazoa - 13262; Fungi - 2840; Plants - 2236; Viruses - 19; Other Eukaryotes - 5233 (source: NCBI BLink).  protein_id AT5G47200.1p  transcript_id AT5G47200.1  protein_id AT5G47200.1p  transcript_id AT5G47200.1  
At5g47210	chr5:019170853	0.0	C/19170853-19171012,19170263-19170581,19170102-19170167,19169878-19170019,19169619-19169777,19169480-19169533,19169388-19169393	AT5G47210.3  CDS  gene_syn MQL5.6, MQL5_6  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product nuclear RNA-binding protein, putative  note nuclear RNA-binding protein, putative; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hyaluronan/mRNA binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: nuclear RNA-binding protein (RGGA) (TAIR:AT4G16830.3); Has 16780 Blast hits to 9158 proteins in 745 species: Archae - 11; Bacteria - 4333; Metazoa - 5699; Fungi - 1395; Plants - 1587; Viruses - 241; Other Eukaryotes - 3514 (source: NCBI BLink).  protein_id AT5G47210.3p  transcript_id AT5G47210.3  protein_id AT5G47210.3p  transcript_id AT5G47210.3  
At5g47210	chr5:019170853	0.0	C/19170853-19171012,19170263-19170581,19170102-19170167,19169878-19170019,19169619-19169777,19169486-19169533,19169222-19169401	AT5G47210.1  CDS  gene_syn MQL5.6, MQL5_6  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product nuclear RNA-binding protein, putative  note nuclear RNA-binding protein, putative; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hyaluronan/mRNA binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: nuclear RNA-binding protein, putative (TAIR:AT4G17520.1); Has 18320 Blast hits to 10363 proteins in 904 species: Archae - 11; Bacteria - 4859; Metazoa - 6001; Fungi - 1554; Plants - 1660; Viruses - 232; Other Eukaryotes - 4003 (source: NCBI BLink).  protein_id AT5G47210.1p  transcript_id AT5G47210.1  protein_id AT5G47210.1p  transcript_id AT5G47210.1  
At5g47210	chr5:019170853	0.0	C/19170853-19171012,19170263-19170581,19170102-19170167,19169878-19170019,19169730-19169777,19169155-19169337	AT5G47210.2  CDS  gene_syn MQL5.6, MQL5_6  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product nuclear RNA-binding protein, putative  note nuclear RNA-binding protein, putative; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hyaluronan/mRNA binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: nuclear RNA-binding protein, putative (TAIR:AT4G17520.1); Has 14054 Blast hits to 7942 proteins in 698 species: Archae - 13; Bacteria - 4192; Metazoa - 4742; Fungi - 1184; Plants - 1583; Viruses - 200; Other Eukaryotes - 2140 (source: NCBI BLink).  protein_id AT5G47210.2p  transcript_id AT5G47210.2  protein_id AT5G47210.2p  transcript_id AT5G47210.2  
At5g47220	chr5:019172023	0.0	C/19172023-19172754	AT5G47220.1  CDS  gene_syn ATERF-2, ATERF2, ERF2, ETHYLENE RESPONSE FACTOR- 2, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2, MQL5.7, MQL5_7  gene ERF2  function Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-2). The protein contains one AP2 domain. Functions as activator of GCC box dependent transcription. Positive regulator of JA-responsive defense genes and resistance to F. oxysporum and enhances JA inhibition of root elongation.  go_component nucleus|GO:0005634|10715325|TAS  go_component nucleus|GO:0005634|9687012|TAS  go_process regulation of transcription, DNA-dependent|GO:0006355|10715325|IDA  go_process induced systemic resistance, jasmonic acid mediated signaling pathway|GO:0009864|16183832|IMP  go_process ethylene mediated signaling pathway|GO:0009873|10715325|TAS  go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS  go_process response to chitin|GO:0010200|17722694|IEP  go_process positive regulation of transcription|GO:0045941|10715325|IDA  go_function DNA binding|GO:0003677|10715325|TAS  go_function transcription factor activity|GO:0003700|10715325|IDA  go_function transcription factor activity|GO:0003700|10715325|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|10715325|IDA  go_function transcription activator activity|GO:0016563|16183832|IMP  product ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2); DNA binding / transcription activator/ transcription factor  note ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2 (ERF2); FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: ethylene mediated signaling pathway, positive regulation of transcription, induced systemic resistance, jasmonic acid mediated signaling pathway, response to chitin, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1); DNA binding / transcription activator/ transcription factor (TAIR:AT4G17500.1); Has 3811 Blast hits to 3685 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 3801; Viruses - 2; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G47220.1p  transcript_id AT5G47220.1  protein_id AT5G47220.1p  transcript_id AT5G47220.1  
At5g47225	chr5:019174589	0.0	W/19174589-19175831	AT5G47225.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22440.1); similar to hypothetical protein 27.t00122 [Brassica oleracea] (GB:ABD65056.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)  
At5g47229	chr5:019179694	0.0	C/19179694-19179849	AT5G47229.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G47229.1p  transcript_id AT5G47229.1  protein_id AT5G47229.1p  transcript_id AT5G47229.1  
At5g47230	chr5:019180072	0.0	W/19180072-19180974	AT5G47230.1  CDS  gene_syn ATERF-5, ATERF5, ERF5, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, MQL5.9, MQL5_9  gene ERF5  function encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-5). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.  go_component nucleus|GO:0005634|10715325|IC  go_component nucleus|GO:0005634|10715325|TAS  go_component nucleus|GO:0005634|9687012|TAS  go_process regulation of transcription, DNA-dependent|GO:0006355|10715325|IDA  go_process response to cold|GO:0009409|14630965|IEP  go_process ethylene mediated signaling pathway|GO:0009873|10715325|TAS  go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS  go_process response to chitin|GO:0010200|17722694|IEP  go_function DNA binding|GO:0003677|10715325|TAS  go_function transcription factor activity|GO:0003700|10715325|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|10715325|IDA  product ERF5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5); DNA binding / transcription activator/ transcription factor  note ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5 (ERF5); FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: ethylene mediated signaling pathway, response to cold, response to chitin, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6); DNA binding / transcription factor (TAIR:AT4G17490.1); Has 3773 Blast hits to 3654 proteins in 201 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 3757; Viruses - 2; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT5G47230.1p  transcript_id AT5G47230.1  protein_id AT5G47230.1p  transcript_id AT5G47230.1  
At5g47240	chr5:019183806	0.0	W/19183806-19183929,19184029-19184306,19184385-19184450,19184542-19184682,19184780-19184908,19185009-19185152,19185240-19185467	AT5G47240.1  CDS  gene_syn Arabidopsis thaliana Nudix hydrolase homolog 8, MQL5.10, MQL5_10, atnudt8  gene atnudt8  go_component cytosol|GO:0005829|15878881|RCA  go_function hydrolase activity|GO:0016787||IEA  go_process response to wounding|GO:0009611|17675405|IEP  go_function hydrolase activity|GO:0016787||ISS  product atnudt8 (Arabidopsis thaliana Nudix hydrolase homolog 8); hydrolase  note Arabidopsis thaliana Nudix hydrolase homolog 8 (atnudt8); FUNCTIONS IN: hydrolase activity; INVOLVED IN: response to wounding; LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), Anti-sense to fibroblast growth factor protein GFG (InterPro:IPR003293), NUDIX hydrolase, core (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2); ADP-ribose diphosphatase/ NAD or NADH binding / hydrolase (TAIR:AT5G47650.1); Has 869 Blast hits to 869 proteins in 223 species: Archae - 10; Bacteria - 416; Metazoa - 165; Fungi - 2; Plants - 87; Viruses - 2; Other Eukaryotes - 187 (source: NCBI BLink).  protein_id AT5G47240.1p  transcript_id AT5G47240.1  protein_id AT5G47240.1p  transcript_id AT5G47240.1  
At5g47250	chr5:019186045	0.0	C/19186045-19188576	AT5G47250.1  CDS  gene_syn MQL5.11, MQL5_11  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative  note disease resistance protein (CC-NBS-LRR class), putative; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: mitochondrion; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT1G12280.1); Has 13369 Blast hits to 12002 proteins in 478 species: Archae - 20; Bacteria - 1145; Metazoa - 2993; Fungi - 98; Plants - 8738; Viruses - 0; Other Eukaryotes - 375 (source: NCBI BLink).  protein_id AT5G47250.1p  transcript_id AT5G47250.1  protein_id AT5G47250.1p  transcript_id AT5G47250.1  
At5g47260	chr5:019189411	0.0	W/19189411-19191989,19192249-19192516	AT5G47260.1  CDS  gene_syn MQL5.12, MQL5_12  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process apoptosis|GO:0006915||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function GTP binding|GO:0005525||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component cellular_component|GO:0005575||ND  go_process defense response|GO:0006952||ISS  product ATP binding / GTP binding / nucleoside-triphosphatase/ nucleotide binding  note ATP binding / GTP binding / nucleoside-triphosphatase/ nucleotide binding; FUNCTIONS IN: nucleoside-triphosphatase activity, GTP binding, nucleotide binding, ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response, apoptosis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), AIG1 (InterPro:IPR006703), NB-ARC (InterPro:IPR002182); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT5G63020.1); Has 8292 Blast hits to 7949 proteins in 375 species: Archae - 6; Bacteria - 242; Metazoa - 611; Fungi - 55; Plants - 7261; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT5G47260.1p  transcript_id AT5G47260.1  protein_id AT5G47260.1p  transcript_id AT5G47260.1  
At5g47280	chr5:019193157	0.0	W/19193157-19193265,19193535-19193905,19193988-19194343,19194437-19194642,19194730-19195559	AT5G47280.1  CDS  gene_syn ADR1-L3, ADR1-like 3, MQL5.14, MQL5_14  gene ADR1-L3  go_process apoptosis|GO:0006915||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product ADR1-L3 (ADR1-like 3); ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding  note ADR1-like 3 (ADR1-L3); FUNCTIONS IN: protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: defense response, apoptosis; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: ADR1-L2 (ADR1-like 2); ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding (TAIR:AT5G04720.1); Has 14832 Blast hits to 9381 proteins in 407 species: Archae - 20; Bacteria - 919; Metazoa - 1911; Fungi - 63; Plants - 11449; Viruses - 0; Other Eukaryotes - 470 (source: NCBI BLink).  protein_id AT5G47280.1p  transcript_id AT5G47280.1  protein_id AT5G47280.1p  transcript_id AT5G47280.1  
At5g47290	chr5:019197166	0.0	C/19197166-19197431,19197040-19197064	AT5G47290.1  CDS  gene_syn MQL5.15, MQL5_15  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT5G04760.1); Has 122 Blast hits to 122 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G47290.1p  transcript_id AT5G47290.1  protein_id AT5G47290.1p  transcript_id AT5G47290.1  
At5g47300	chr5:019198125	0.0	W/19198125-19199375	AT5G47300.1  CDS  gene_syn MQL5.16, MQL5_16  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G25460.1); Has 1056 Blast hits to 1034 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1054; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G47300.1p  transcript_id AT5G47300.1  protein_id AT5G47300.1p  transcript_id AT5G47300.1  
At5g47306	chr5:019200253	0.0	W/19200253-19200375	AT5G47306.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G47306.1p  transcript_id AT5G47306.1  protein_id AT5G47306.1p  transcript_id AT5G47306.1  
At5g47310	chr5:019201325	0.0	W/19201325-19201496,19201918-19202205,19202303-19202380,19202475-19202674	AT5G47310.1  CDS  gene_syn MQL5.17, MQL5_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17486.1); Has 573 Blast hits to 573 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 193; Fungi - 56; Plants - 187; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).  protein_id AT5G47310.1p  transcript_id AT5G47310.1  protein_id AT5G47310.1p  transcript_id AT5G47310.1  
At5g47320	chr5:019203801	0.0	W/19203801-19203909,19204027-19204095,19204386-19204492,19204598-19204951	AT5G47320.1  CDS  gene_syn MQL5.18, MQL5_18, RIBOSOMAL PROTEIN S19, RPS19  gene RPS19  function Nuclear encoded mitochondrial ribosome subunit.  go_component mitochondrial small ribosomal subunit|GO:0005763|8641279|IDA  go_process translation|GO:0006412|8641279|NAS  go_function RNA binding|GO:0003723|8641279|ISS  go_function RNA binding|GO:0003723||ISS  product RPS19 (RIBOSOMAL PROTEIN S19); RNA binding  note RIBOSOMAL PROTEIN S19 (RPS19); FUNCTIONS IN: RNA binding; INVOLVED IN: translation; LOCATED IN: mitochondrial small ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ribosomal protein S19/S15 (InterPro:IPR002222), Ribosomal protein S19, bacterial-type (InterPro:IPR005732); BEST Arabidopsis thaliana protein match is: GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4); RNA binding / double-stranded DNA binding / single-stranded DNA binding (TAIR:AT3G23830.2); Has 23370 Blast hits to 18605 proteins in 2165 species: Archae - 100; Bacteria - 4004; Metazoa - 9777; Fungi - 1999; Plants - 3802; Viruses - 0; Other Eukaryotes - 3688 (source: NCBI BLink).  protein_id AT5G47320.1p  transcript_id AT5G47320.1  protein_id AT5G47320.1p  transcript_id AT5G47320.1  
At5g47330	chr5:019207170	0.0	W/19207170-19207354,19207502-19207628,19207725-19207838,19207939-19208004,19208088-19208126,19208215-19208337,19208421-19208711	AT5G47330.1  CDS  gene_syn MQL5.19, MQL5_19  go_component endomembrane system|GO:0012505||IEA  go_function palmitoyl-(protein) hydrolase activity|GO:0008474||IEA  go_process response to salt stress|GO:0009651|11351099|IEP  go_function palmitoyl-(protein) hydrolase activity|GO:0008474||ISS  product palmitoyl protein thioesterase family protein  note palmitoyl protein thioesterase family protein; FUNCTIONS IN: palmitoyl-(protein) hydrolase activity; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Palmitoyl protein thioesterase (InterPro:IPR002472); BEST Arabidopsis thaliana protein match is: palmitoyl protein thioesterase family protein (TAIR:AT5G47340.1); Has 469 Blast hits to 465 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 283; Fungi - 63; Plants - 80; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT5G47330.1p  transcript_id AT5G47330.1  protein_id AT5G47330.1p  transcript_id AT5G47330.1  
At5g47340	chr5:019209507	0.0	W/19209507-19209688,19209875-19210001,19210096-19210215,19210327-19210398,19210480-19210518,19210640-19210762,19210844-19211134	AT5G47340.1  CDS  gene_syn MQL5.20, MQL5_20  go_component endomembrane system|GO:0012505||IEA  go_process protein modification process|GO:0006464||IEA  go_function palmitoyl-(protein) hydrolase activity|GO:0008474||IEA  go_function palmitoyl-(protein) hydrolase activity|GO:0008474||ISS  product palmitoyl protein thioesterase family protein  note palmitoyl protein thioesterase family protein; FUNCTIONS IN: palmitoyl-(protein) hydrolase activity; INVOLVED IN: protein modification process; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, 4 leaf senescence stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Palmitoyl protein thioesterase (InterPro:IPR002472); BEST Arabidopsis thaliana protein match is: palmitoyl protein thioesterase family protein (TAIR:AT5G47330.1); Has 474 Blast hits to 470 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 288; Fungi - 63; Plants - 80; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT5G47340.1p  transcript_id AT5G47340.1  protein_id AT5G47340.1p  transcript_id AT5G47340.1  
At5g47350	chr5:019212754	0.0	W/19212754-19212935,19213089-19213221,19213307-19213423,19213540-19213605,19213691-19213729,19213823-19213945,19214028-19214318	AT5G47350.1  CDS  gene_syn MQL5.21, MQL5_21  go_component endomembrane system|GO:0012505||IEA  go_process protein modification process|GO:0006464||IEA  go_function palmitoyl-(protein) hydrolase activity|GO:0008474||IEA  go_function palmitoyl-(protein) hydrolase activity|GO:0008474||ISS  product palmitoyl protein thioesterase family protein  note palmitoyl protein thioesterase family protein; FUNCTIONS IN: palmitoyl-(protein) hydrolase activity; INVOLVED IN: protein modification process; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Palmitoyl protein thioesterase (InterPro:IPR002472); BEST Arabidopsis thaliana protein match is: palmitoyl protein thioesterase family protein (TAIR:AT5G47330.1); Has 470 Blast hits to 466 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 284; Fungi - 63; Plants - 80; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT5G47350.1p  transcript_id AT5G47350.1  protein_id AT5G47350.1p  transcript_id AT5G47350.1  
At5g47360	chr5:019214445	0.0	C/19214445-19215878	AT5G47360.1  CDS  gene_syn MQL5.22, MQL5_22  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12775.1); Has 12403 Blast hits to 4408 proteins in 144 species: Archae - 1; Bacteria - 6; Metazoa - 150; Fungi - 105; Plants - 11726; Viruses - 0; Other Eukaryotes - 415 (source: NCBI BLink).  protein_id AT5G47360.1p  transcript_id AT5G47360.1  protein_id AT5G47360.1p  transcript_id AT5G47360.1  
At5g47370	chr5:019217497	0.0	C/19217497-19217647,19217051-19217361,19216888-19216967,19216482-19216791	AT5G47370.1  CDS  gene_syn HAT2, MQL5.23, MQL5_23  gene HAT2  function homeobox-leucine zipper genes induced by auxin, but not by other phytohormones. Plays opposite roles in the shoot and root tissues in regulating auxin-mediated morphogenesis.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process shade avoidance|GO:0009641|16565297|IEP  go_process response to auxin stimulus|GO:0009733|12492842|IMP  go_process auxin mediated signaling pathway|GO:0009734|12492842|IEP  go_process unidimensional cell growth|GO:0009826|12492842|IMP  go_function DNA binding|GO:0003677|12492842|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription repressor activity|GO:0016564|12492842|IDA  product HAT2; DNA binding / transcription factor/ transcription repressor  note HAT2; FUNCTIONS IN: transcription repressor activity, transcription factor activity, DNA binding; INVOLVED IN: auxin mediated signaling pathway, response to auxin stimulus, regulation of transcription, DNA-dependent, shade avoidance, unidimensional cell growth; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HD-ZIP protein, N-terminal (InterPro:IPR006712), Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: HAT1; DNA binding / transcription factor (TAIR:AT4G17460.1); Has 7460 Blast hits to 7435 proteins in 493 species: Archae - 0; Bacteria - 0; Metazoa - 5743; Fungi - 180; Plants - 1417; Viruses - 3; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT5G47370.1p  transcript_id AT5G47370.1  protein_id AT5G47370.1p  transcript_id AT5G47370.1  
At5g47380	chr5:019224374	0.0	C/19224374-19224471,19224052-19224127,19223865-19223975,19223645-19223761,19223202-19223555,19222791-19223113,19222612-19222711,19222465-19222524,19222288-19222374,19222084-19222218,19221618-19221943,19221472-19221541	AT5G47380.1  CDS  gene_syn MQL5.24, MQL5_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66600.3); Has 342 Blast hits to 332 proteins in 54 species: Archae - 0; Bacteria - 34; Metazoa - 39; Fungi - 0; Plants - 253; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT5G47380.1p  transcript_id AT5G47380.1  protein_id AT5G47380.1p  transcript_id AT5G47380.1  
At5g47390	chr5:019227001	0.0	W/19227001-19227283,19227445-19227653,19227941-19228546	AT5G47390.1  CDS  gene_syn MQL5.25, MQL5_25  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 8 processes; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Zinc finger, CCHC-type (InterPro:IPR001878), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT3G16350.1); Has 780 Blast hits to 779 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 6; Plants - 708; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT5G47390.1p  transcript_id AT5G47390.1  protein_id AT5G47390.1p  transcript_id AT5G47390.1  
At5g47400	chr5:019229162	0.0	W/19229162-19230874,19230997-19231143,19231385-19231522	AT5G47400.1  CDS  gene_syn MQL5.26, MQL5_26  go_component endomembrane system|GO:0012505||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 56 Blast hits to 56 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G47400.1p  transcript_id AT5G47400.1  protein_id AT5G47400.1p  transcript_id AT5G47400.1  
At5g47410	chr5:019232215	0.0	W/19232215-19232586	AT5G47410.1  CDS  gene_syn MQL5.27, MQL5_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; Has 12 Blast hits to 12 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G47410.1p  transcript_id AT5G47410.1  protein_id AT5G47410.1p  transcript_id AT5G47410.1  
At5g47420	chr5:019233013	0.0	W/19233013-19233060,19233283-19233342,19233438-19233477,19233563-19233741,19233848-19233886,19233990-19234079,19234189-19234249,19234337-19234461,19234553-19234644,19234724-19234838	AT5G47420.1  CDS  gene_syn MQL5.28, MQL5_28  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF124 (InterPro:IPR002838), Tryptophan RNA-binding attenuator protein-like (InterPro:IPR016031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17420.1); Has 568 Blast hits to 568 proteins in 252 species: Archae - 56; Bacteria - 410; Metazoa - 0; Fungi - 8; Plants - 37; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT5G47420.1p  transcript_id AT5G47420.1  protein_id AT5G47420.1p  transcript_id AT5G47420.1  
At5g47430	chr5:019240068	0.0	C/19240068-19240147,19239797-19239878,19239524-19239693,19239358-19239434,19239147-19239203,19238894-19239050,19238643-19238794,19238383-19238547,19238000-19238302,19237774-19237812,19237348-19237666,19237148-19237267,19236964-19237054,19235819-19236502	AT5G47430.2  CDS  gene_syn MQL5.29, MQL5_29  go_component nucleus|GO:0005634||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DWNN domain (InterPro:IPR014891), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT4G17410.1); Has 12340 Blast hits to 8382 proteins in 349 species: Archae - 0; Bacteria - 308; Metazoa - 7580; Fungi - 1800; Plants - 947; Viruses - 24; Other Eukaryotes - 1681 (source: NCBI BLink).  protein_id AT5G47430.2p  transcript_id AT5G47430.2  protein_id AT5G47430.2p  transcript_id AT5G47430.2  
At5g47430	chr5:019240431	0.0	C/19240431-19240596,19240068-19240164,19239797-19239878,19239524-19239693,19239358-19239434,19239147-19239203,19238894-19239050,19238643-19238794,19238383-19238547,19238000-19238302,19237774-19237812,19237348-19237666,19237148-19237267,19236964-19237054,19235819-19236502	AT5G47430.1  CDS  gene_syn MQL5.29, MQL5_29  go_component nucleus|GO:0005634||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DWNN domain (InterPro:IPR014891), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT4G17410.1); Has 12501 Blast hits to 8536 proteins in 350 species: Archae - 0; Bacteria - 308; Metazoa - 7733; Fungi - 1802; Plants - 953; Viruses - 24; Other Eukaryotes - 1681 (source: NCBI BLink).  protein_id AT5G47430.1p  transcript_id AT5G47430.1  protein_id AT5G47430.1p  transcript_id AT5G47430.1  
At5g47435	chr5:019241779	0.0	W/19241779-19242032,19242172-19242322,19242400-19242473,19242564-19242723,19242890-19242988,19243084-19243170,19243278-19243424	AT5G47435.1  CDS  function encodes one of the two putative formyltetrahydrofolate deformylase. Located in the mitochondrion. Involved in photorespiratory tetrahydrofolate cycle.  go_function formyltetrahydrofolate deformylase activity|GO:0008864||IEA  go_function hydroxymethyl-, formyl- and related transferase activity|GO:0016742||IEA  go_component mitochondrion|GO:0005739|18628352|IDA  go_process biosynthetic process|GO:0009058||ISS  go_process purine ribonucleotide biosynthetic process|GO:0009152||ISS  go_process photorespiration|GO:0009853|18628352|IMP  go_process tetrahydrofolate metabolic process|GO:0046653|18628352|IMP  go_function formyltetrahydrofolate deformylase activity|GO:0008864||ISS  go_function hydroxymethyl-, formyl- and related transferase activity|GO:0016742||ISS  product formyltetrahydrofolate deformylase, putative  note formyltetrahydrofolate deformylase, putative; FUNCTIONS IN: hydroxymethyl-, formyl- and related transferase activity, formyltetrahydrofolate deformylase activity; INVOLVED IN: tetrahydrofolate metabolic process, purine ribonucleotide biosynthetic process, biosynthetic process, photorespiration; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Formyltetrahydrofolate deformylase (InterPro:IPR004810), Formyl transferase, N-terminal (InterPro:IPR002376); BEST Arabidopsis thaliana protein match is: formyltetrahydrofolate deformylase/ hydroxymethyl-, formyl- and related transferase/ methyltransferase (TAIR:AT4G17360.1); Has 9704 Blast hits to 9704 proteins in 1459 species: Archae - 82; Bacteria - 5655; Metazoa - 156; Fungi - 58; Plants - 90; Viruses - 2; Other Eukaryotes - 3661 (source: NCBI BLink).  protein_id AT5G47435.1p  transcript_id AT5G47435.1  protein_id AT5G47435.1p  transcript_id AT5G47435.1  
At5g47435	chr5:019241779	0.0	W/19241779-19242032,19242172-19242322,19242400-19242473,19242564-19242723,19242890-19242988,19243084-19243170,19243278-19243424	AT5G47435.2  CDS  function encodes one of the two putative formyltetrahydrofolate deformylase. Located in the mitochondrion. Involved in photorespiratory tetrahydrofolate cycle.  go_function formyltetrahydrofolate deformylase activity|GO:0008864||IEA  go_function hydroxymethyl-, formyl- and related transferase activity|GO:0016742||IEA  go_component mitochondrion|GO:0005739|18628352|IDA  go_process biosynthetic process|GO:0009058||ISS  go_process purine ribonucleotide biosynthetic process|GO:0009152||ISS  go_process photorespiration|GO:0009853|18628352|IMP  go_process tetrahydrofolate metabolic process|GO:0046653|18628352|IMP  go_function formyltetrahydrofolate deformylase activity|GO:0008864||ISS  go_function hydroxymethyl-, formyl- and related transferase activity|GO:0016742||ISS  product formyltetrahydrofolate deformylase, putative  note formyltetrahydrofolate deformylase, putative; FUNCTIONS IN: hydroxymethyl-, formyl- and related transferase activity, formyltetrahydrofolate deformylase activity; INVOLVED IN: tetrahydrofolate metabolic process, purine ribonucleotide biosynthetic process, biosynthetic process, photorespiration; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Formyltetrahydrofolate deformylase (InterPro:IPR004810), Formyl transferase, N-terminal (InterPro:IPR002376); BEST Arabidopsis thaliana protein match is: formyltetrahydrofolate deformylase/ hydroxymethyl-, formyl- and related transferase/ methyltransferase (TAIR:AT4G17360.1); Has 9704 Blast hits to 9704 proteins in 1459 species: Archae - 82; Bacteria - 5655; Metazoa - 156; Fungi - 58; Plants - 90; Viruses - 2; Other Eukaryotes - 3661 (source: NCBI BLink).  protein_id AT5G47435.2p  transcript_id AT5G47435.2  protein_id AT5G47435.2p  transcript_id AT5G47435.2  
At5g47440	chr5:019244908	0.0	C/19244908-19245204,19244436-19244829,19244166-19244345,19244039-19244088,19243892-19243949,19243570-19243811	AT5G47440.1  CDS  gene_syn MNJ7.2, MNJ7_2  go_component cellular_component|GO:0005575||ND  go_process signal transduction|GO:0007165|15358268|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product phosphoinositide binding  note phosphoinositide binding; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pleckstrin-like, plant (InterPro:IPR013666), Protein of unknown function DUF828, plant (InterPro:IPR008546), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: phosphoinositide binding (TAIR:AT4G17350.1); Has 124 Blast hits to 110 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G47440.1p  transcript_id AT5G47440.1  protein_id AT5G47440.1p  transcript_id AT5G47440.1  
At5g47445	chr5:019246346	0.0	C/19246346-19247917	AT5G47445.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 7.6e-84 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At5g47450	chr5:019249089	0.0	C/19249089-19249466,19248509-19248883	AT5G47450.1  CDS  gene_syn ARABIDOPSIS THALIANA TONOPLAST INTRINSIC PROTEIN 2;3, ATTIP2;3, DELTA-TIP3, DELTA-TONOPLAST INTRINSIC PROTEIN 3, MNJ7.4, MNJ7_4, TIP2;3, TONOPLAST INTRINSIC PROTEIN 2;3  gene TIP2;3  function Tonoplast intrinsic protein, transports ammonium (NH3) and methylammonium across the tonoplast membrane, gene expression shows diurnal regulation and is upregulated by ammonium (NH3).  go_component plant-type vacuole membrane|GO:0009705|15665250|IDA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_process response to salt stress|GO:0009651|16183846|IEP  go_function methylammonium transmembrane transporter activity|GO:0015200|15665250|IDA  go_function water channel activity|GO:0015250||ISS  go_function ammonia transporter activity|GO:0051739|15665250|IGI  product AtTIP2;3; ammonia transporter/ methylammonium transmembrane transporter/ water channel  note AtTIP2;3; FUNCTIONS IN: ammonia transporter activity, water channel activity, methylammonium transmembrane transporter activity; INVOLVED IN: transport, response to salt stress; LOCATED IN: plant-type vacuole membrane, membrane; EXPRESSED IN: shoot, root epidermis, flower, root, leaf; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: TIP2;2 (TONOPLAST INTRINSIC PROTEIN 2;2); water channel (TAIR:AT4G17340.1); Has 6959 Blast hits to 6924 proteins in 1269 species: Archae - 57; Bacteria - 2687; Metazoa - 1290; Fungi - 276; Plants - 1473; Viruses - 4; Other Eukaryotes - 1172 (source: NCBI BLink).  protein_id AT5G47450.1p  transcript_id AT5G47450.1  protein_id AT5G47450.1p  transcript_id AT5G47450.1  
At5g47455	chr5:019250805	0.0	W/19250805-19250980,19251078-19251196,19251658-19251665	AT5G47455.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.2); Has 107 Blast hits to 107 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G47455.1p  transcript_id AT5G47455.1  protein_id AT5G47455.1p  transcript_id AT5G47455.1  
At5g47455	chr5:019250805	0.0	W/19250805-19250980,19251078-19251196,19251658-19251665	AT5G47455.6  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.2); Has 107 Blast hits to 107 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G47455.6p  transcript_id AT5G47455.6  protein_id AT5G47455.6p  transcript_id AT5G47455.6  
At5g47455	chr5:019250805	0.0	W/19250805-19250980,19251078-19251196,19251658-19251665	AT5G47455.7  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.2).  protein_id AT5G47455.7p  transcript_id AT5G47455.7  protein_id AT5G47455.7p  transcript_id AT5G47455.7  
At5g47455	chr5:019250805	0.0	W/19250805-19250980,19251078-19251196,19251935-19251954	AT5G47455.2  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.2); Has 97 Blast hits to 97 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G47455.2p  transcript_id AT5G47455.2  protein_id AT5G47455.2p  transcript_id AT5G47455.2  
At5g47455	chr5:019250805	0.0	W/19250805-19250980,19251078-19251196,19251935-19251954	AT5G47455.5  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.2); Has 97 Blast hits to 97 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G47455.5p  transcript_id AT5G47455.5  protein_id AT5G47455.5p  transcript_id AT5G47455.5  
At5g47455	chr5:019250805	0.0	W/19250805-19250980,19251078-19251196,19252204-19252229	AT5G47455.3  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.2); Has 99 Blast hits to 99 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G47455.3p  transcript_id AT5G47455.3  protein_id AT5G47455.3p  transcript_id AT5G47455.3  
At5g47455	chr5:019250805	0.0	W/19250805-19250980,19251078-19251196,19252206-19252261	AT5G47455.4  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.2); Has 90 Blast hits to 90 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G47455.4p  transcript_id AT5G47455.4  protein_id AT5G47455.4p  transcript_id AT5G47455.4  
At5g47460	chr5:019252463	0.0	C/19252463-19254193	AT5G47460.1  CDS  gene_syn MNJ7.5, MNJ7_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G09950.1); Has 13618 Blast hits to 4698 proteins in 104 species: Archae - 0; Bacteria - 2; Metazoa - 35; Fungi - 32; Plants - 13361; Viruses - 0; Other Eukaryotes - 188 (source: NCBI BLink).  protein_id AT5G47460.1p  transcript_id AT5G47460.1  protein_id AT5G47460.1p  transcript_id AT5G47460.1  
At5g47470	chr5:019254598	0.0	W/19254598-19254842,19254941-19255006,19255102-19255218,19255298-19255520,19255583-19255747,19255840-19255991,19256252-19256378	AT5G47470.1  CDS  gene_syn MNJ7.6, MNJ7_6  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  product nodulin MtN21 family protein  note nodulin MtN21 family protein; LOCATED IN: membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: integral membrane family protein / nodulin MtN21-related (TAIR:AT4G16620.1); Has 1947 Blast hits to 1938 proteins in 287 species: Archae - 6; Bacteria - 679; Metazoa - 4; Fungi - 0; Plants - 610; Viruses - 0; Other Eukaryotes - 648 (source: NCBI BLink).  protein_id AT5G47470.1p  transcript_id AT5G47470.1  protein_id AT5G47470.1p  transcript_id AT5G47470.1  
At5g47480	chr5:019257420	0.0	W/19257420-19259072,19259276-19259596,19259691-19259816,19259897-19260019,19260102-19260338,19260416-19260550,19260744-19260871,19260955-19261063,19261315-19261602,19261818-19261970,19262051-19262349,19262652-19263132	AT5G47480.1  CDS  gene_syn MNJ7.7, MNJ7_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47490.1); Has 2513 Blast hits to 1104 proteins in 199 species: Archae - 6; Bacteria - 149; Metazoa - 638; Fungi - 356; Plants - 66; Viruses - 5; Other Eukaryotes - 1293 (source: NCBI BLink).  protein_id AT5G47480.1p  transcript_id AT5G47480.1  protein_id AT5G47480.1p  transcript_id AT5G47480.1  
At5g47490	chr5:019264675	0.0	W/19264675-19266303,19266456-19266779,19266875-19267000,19267100-19267222,19267308-19267478,19267751-19267876,19267952-19268086,19268287-19268414,19268500-19268608,19268815-19269135,19269211-19269360,19269439-19269725,19270031-19270487	AT5G47490.1  CDS  gene_syn MNJ7.8, MNJ7_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47480.1); Has 597 Blast hits to 453 proteins in 145 species: Archae - 0; Bacteria - 20; Metazoa - 249; Fungi - 180; Plants - 39; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).  protein_id AT5G47490.1p  transcript_id AT5G47490.1  protein_id AT5G47490.1p  transcript_id AT5G47490.1  
At5g47500	chr5:019272550	0.0	C/19272550-19272845,19272212-19272401,19271916-19272122,19271504-19271742,19271262-19271418	AT5G47500.1  CDS  gene_syn MNJ7.9, MNJ7_9  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT5G19730.1); Has 1217 Blast hits to 1190 proteins in 176 species: Archae - 0; Bacteria - 260; Metazoa - 1; Fungi - 128; Plants - 828; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G47500.1p  transcript_id AT5G47500.1  protein_id AT5G47500.1p  transcript_id AT5G47500.1  
At5g47510	chr5:019275048	0.0	W/19275048-19275205,19275272-19275371,19275465-19275731,19275811-19275888,19275967-19276068,19276149-19276198,19276304-19276412,19276486-19276560,19276642-19276716,19276791-19276832,19276925-19276999	AT5G47510.1  CDS  gene_syn MNJ7.10, MNJ7_10  go_component cellular_component|GO:0005575||ND  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  note SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SFH3 (SEC14-LIKE 3); phosphatidylinositol transporter (TAIR:AT2G21540.2); Has 1500 Blast hits to 1498 proteins in 173 species: Archae - 0; Bacteria - 0; Metazoa - 542; Fungi - 277; Plants - 410; Viruses - 0; Other Eukaryotes - 271 (source: NCBI BLink).  protein_id AT5G47510.1p  transcript_id AT5G47510.1  protein_id AT5G47510.1p  transcript_id AT5G47510.1  
At5g47520	chr5:019278027	0.0	C/19278027-19278366,19277596-19277921	AT5G47520.1  CDS  gene_syn Arabidopsis Rab GTPase homolog A5a, AtRABA5a, MNJ7.11, MNJ7_11  gene AtRABA5a  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product AtRABA5a (Arabidopsis Rab GTPase homolog A5a); GTP binding  note Arabidopsis Rab GTPase homolog A5a (AtRABA5a); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: AtRABA5d (Arabidopsis Rab GTPase homolog A5d); GTP binding (TAIR:AT2G31680.1); Has 22463 Blast hits to 22431 proteins in 615 species: Archae - 17; Bacteria - 113; Metazoa - 12640; Fungi - 2605; Plants - 2051; Viruses - 19; Other Eukaryotes - 5018 (source: NCBI BLink).  protein_id AT5G47520.1p  transcript_id AT5G47520.1  protein_id AT5G47520.1p  transcript_id AT5G47520.1  
At5g47530	chr5:019281471	0.0	W/19281471-19282097,19282227-19282481,19282565-19282870	AT5G47530.1  CDS  gene_syn MNJ7.12, MNJ7_12  go_component membrane|GO:0016020|10080694|ISS  go_process multicellular organismal development|GO:0007275||ISS  product auxin-responsive protein, putative  note auxin-responsive protein, putative; INVOLVED IN: multicellular organismal development; LOCATED IN: membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP037471 (InterPro:IPR017214), Protein of unknown function DUF568, DOMON-like (InterPro:IPR007613), DOMON related (InterPro:IPR005018), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17280.1); Has 390 Blast hits to 390 proteins in 77 species: Archae - 0; Bacteria - 8; Metazoa - 85; Fungi - 33; Plants - 251; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT5G47530.1p  transcript_id AT5G47530.1  protein_id AT5G47530.1p  transcript_id AT5G47530.1  
At5g47540	chr5:019285200	0.0	C/19285200-19285328,19284866-19285027,19284659-19284777,19284479-19284553,19284281-19284374,19284123-19284182,19283937-19284005,19283749-19283847,19283627-19283671,19283435-19283537,19283265-19283341	AT5G47540.1  CDS  gene_syn MNJ7.13, MNJ7_13  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mo25-like (InterPro:IPR013878), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: Mo25 family protein (TAIR:AT4G17270.1); Has 389 Blast hits to 389 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 178; Fungi - 88; Plants - 80; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT5G47540.1p  transcript_id AT5G47540.1  protein_id AT5G47540.1p  transcript_id AT5G47540.1  
At5g47550	chr5:019286596	0.0	C/19286596-19286964	AT5G47550.1  CDS  gene_syn MNJ7.14, MNJ7_14  go_component cell wall|GO:0005618|15593128|IDA  go_function cysteine-type endopeptidase inhibitor activity|GO:0004869||IEA  go_process biological_process|GO:0008150||ND  go_function cysteine-type endopeptidase inhibitor activity|GO:0004869||ISS  product cysteine protease inhibitor, putative / cystatin, putative  note cysteine protease inhibitor, putative / cystatin, putative; FUNCTIONS IN: cysteine-type endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I25, cystatin, conserved site (InterPro:IPR018073), Proteinase inhibitor I25, cystatin (InterPro:IPR000010); BEST Arabidopsis thaliana protein match is: cysteine protease inhibitor family protein / cystatin family protein (TAIR:AT4G16500.1); Has 507 Blast hits to 483 proteins in 88 species: Archae - 0; Bacteria - 2; Metazoa - 12; Fungi - 0; Plants - 482; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT5G47550.1p  transcript_id AT5G47550.1  protein_id AT5G47550.1p  transcript_id AT5G47550.1  
At5g47560	chr5:019289901	0.0	C/19289901-19290347,19288013-19289153,19287895-19287929	AT5G47560.1  CDS  gene_syn ATSDAT, ATTDT, TDT, TONOPLAST DICARBOXYLATE TRANSPORTER  gene TDT  function Encodes a tonoplast malate/fumarate transporter.  go_component vacuole|GO:0005773|12947042|IDA  go_process sodium ion transport|GO:0006814||ISS  go_process dicarboxylic acid transport|GO:0006835||ISS  go_process malate transport|GO:0015743|12947042|TAS  go_process regulation of intracellular pH|GO:0051453|15728336|TAS  go_function malate transmembrane transporter activity|GO:0015140|12947042|IDA  go_function malate transmembrane transporter activity|GO:0015140|12947042|IMP  go_function sodium:dicarboxylate symporter activity|GO:0017153||ISS  product TDT (TONOPLAST DICARBOXYLATE TRANSPORTER); malate transmembrane transporter/ sodium:dicarboxylate symporter  note TONOPLAST DICARBOXYLATE TRANSPORTER (TDT); FUNCTIONS IN: sodium:dicarboxylate symporter activity, malate transmembrane transporter activity; INVOLVED IN: dicarboxylic acid transport, sodium ion transport, malate transport, regulation of intracellular pH; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sodium/sulphate symporter (InterPro:IPR001898); Has 5681 Blast hits to 5301 proteins in 898 species: Archae - 70; Bacteria - 3113; Metazoa - 513; Fungi - 126; Plants - 69; Viruses - 1; Other Eukaryotes - 1789 (source: NCBI BLink).  protein_id AT5G47560.1p  transcript_id AT5G47560.1  protein_id AT5G47560.1p  transcript_id AT5G47560.1  
At5g47570	chr5:019294529	0.0	C/19294529-19294666,19294367-19294453,19294185-19294280,19292869-19292925	AT5G47570.1  CDS  gene_syn MNJ7.16, MNJ7_16  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: respiratory chain complex I; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 31 Blast hits to 31 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G47570.1p  transcript_id AT5G47570.1  protein_id AT5G47570.1p  transcript_id AT5G47570.1  
At5g47580	chr5:019294948	0.0	C/19294948-19297194	AT5G47580.1  CDS  gene_syn MNJ7.17, MNJ7_17  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17250.1); Has 17 Blast hits to 16 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G47580.1p  transcript_id AT5G47580.1  protein_id AT5G47580.1p  transcript_id AT5G47580.1  
At5g47590	chr5:019299045	0.0	C/19299045-19299099,19298393-19298770,19297945-19298306	AT5G47590.1  CDS  gene_syn MNJ7.18, MNJ7_18  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_component cellular_component|GO:0005575||ND  product heat shock protein-related  note heat shock protein-related; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Small heat shock protein, predicted, plant (InterPro:IPR016952), Peptidase A1 (InterPro:IPR001461), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: heat shock protein-related (TAIR:AT4G16550.1); Has 51 Blast hits to 42 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G47590.1p  transcript_id AT5G47590.1  protein_id AT5G47590.1p  transcript_id AT5G47590.1  
At5g47600	chr5:019300402	0.0	C/19300402-19300456,19299945-19300285	AT5G47600.1  CDS  gene_syn MNJ7.19, MNJ7_19  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product heat shock protein-related  note heat shock protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12180.1); Has 64 Blast hits to 64 proteins in 28 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G47600.1p  transcript_id AT5G47600.1  protein_id AT5G47600.1p  transcript_id AT5G47600.1  
At5g47610	chr5:019301399	0.0	C/19301399-19301899	AT5G47610.1  CDS  gene_syn MNJ7.20, MNJ7_20  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G17245.1); Has 6463 Blast hits to 6441 proteins in 221 species: Archae - 0; Bacteria - 0; Metazoa - 2126; Fungi - 496; Plants - 2789; Viruses - 56; Other Eukaryotes - 996 (source: NCBI BLink).  protein_id AT5G47610.1p  transcript_id AT5G47610.1  protein_id AT5G47610.1p  transcript_id AT5G47610.1  
At5g47620	chr5:019304057	0.0	C/19304057-19304278,19302659-19303718,19302548-19302561	AT5G47620.1  CDS  gene_syn MNJ7.21, MNJ7_21  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative  note heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative (TAIR:AT3G07810.2); Has 23293 Blast hits to 15299 proteins in 650 species: Archae - 8; Bacteria - 2009; Metazoa - 12878; Fungi - 2200; Plants - 3758; Viruses - 0; Other Eukaryotes - 2440 (source: NCBI BLink).  protein_id AT5G47620.1p  transcript_id AT5G47620.1  protein_id AT5G47620.1p  transcript_id AT5G47620.1  
At5g47620	chr5:019304057	0.0	C/19304057-19304278,19302659-19303718,19302548-19302561	AT5G47620.2  CDS  gene_syn MNJ7.21, MNJ7_21  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative  note heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative (TAIR:AT3G07810.2); Has 23293 Blast hits to 15299 proteins in 650 species: Archae - 8; Bacteria - 2009; Metazoa - 12878; Fungi - 2200; Plants - 3758; Viruses - 0; Other Eukaryotes - 2440 (source: NCBI BLink).  protein_id AT5G47620.2p  transcript_id AT5G47620.2  protein_id AT5G47620.2p  transcript_id AT5G47620.2  
At5g47620	chr5:019304065	0.0	C/19304065-19304106,19302659-19303718,19302548-19302561	AT5G47620.3  CDS  gene_syn MNJ7.21, MNJ7_21  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative  note heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative (TAIR:AT3G07810.2); Has 12700 Blast hits to 10210 proteins in 566 species: Archae - 2; Bacteria - 1220; Metazoa - 6985; Fungi - 1125; Plants - 2122; Viruses - 0; Other Eukaryotes - 1246 (source: NCBI BLink).  protein_id AT5G47620.3p  transcript_id AT5G47620.3  protein_id AT5G47620.3p  transcript_id AT5G47620.3  
At5g47630	chr5:019306397	0.0	W/19306397-19306603,19306697-19306885	AT5G47630.1  CDS  gene_syn MNJ7.22, MNJ7_22, mitochondrial acyl carrier protein 3, mtACP3  gene mtACP3  function Encodes a member of the mitochondrial acyl carrier protein (ACP) family. Its role is currently obscure as it is weakly expressed and has not yet been identified by mitochondrial proteome analysis.  go_process fatty acid biosynthetic process|GO:0006633||IEA  go_function acyl carrier activity|GO:0000036||IEA  go_function cofactor binding|GO:0048037||IEA  go_component cellular_component|GO:0005575||ND  go_process fatty acid biosynthetic process|GO:0006633||ISS  go_function acyl carrier activity|GO:0000036||ISS  product mtACP3 (mitochondrial acyl carrier protein 3); acyl carrier/ cofactor binding  note mitochondrial acyl carrier protein 3 (mtACP3); FUNCTIONS IN: acyl carrier activity, cofactor binding; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphopantetheine-binding (InterPro:IPR006163), Acyl carrier protein (ACP) (InterPro:IPR003231), Acyl carrier protein-like (InterPro:IPR009081); BEST Arabidopsis thaliana protein match is: MTACP-1 (MITOCHONDRIAL ACYL CARRIER PROTEIN 1); acyl carrier/ cofactor binding / phosphopantetheine binding (TAIR:AT2G44620.1); Has 4836 Blast hits to 4835 proteins in 1440 species: Archae - 0; Bacteria - 2685; Metazoa - 166; Fungi - 95; Plants - 135; Viruses - 2; Other Eukaryotes - 1753 (source: NCBI BLink).  protein_id AT5G47630.1p  transcript_id AT5G47630.1  protein_id AT5G47630.1p  transcript_id AT5G47630.1  
At5g47630	chr5:019306397	0.0	W/19306397-19306603,19306697-19306885	AT5G47630.2  CDS  gene_syn MNJ7.22, MNJ7_22, mitochondrial acyl carrier protein 3, mtACP3  gene mtACP3  function Encodes a member of the mitochondrial acyl carrier protein (ACP) family. Its role is currently obscure as it is weakly expressed and has not yet been identified by mitochondrial proteome analysis.  go_process fatty acid biosynthetic process|GO:0006633||IEA  go_function acyl carrier activity|GO:0000036||IEA  go_function cofactor binding|GO:0048037||IEA  go_component cellular_component|GO:0005575||ND  go_process fatty acid biosynthetic process|GO:0006633||ISS  go_function acyl carrier activity|GO:0000036||ISS  product mtACP3 (mitochondrial acyl carrier protein 3); acyl carrier/ cofactor binding  note mitochondrial acyl carrier protein 3 (mtACP3); FUNCTIONS IN: acyl carrier activity, cofactor binding; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphopantetheine-binding (InterPro:IPR006163), Acyl carrier protein (ACP) (InterPro:IPR003231), Acyl carrier protein-like (InterPro:IPR009081); BEST Arabidopsis thaliana protein match is: MTACP-1 (MITOCHONDRIAL ACYL CARRIER PROTEIN 1); acyl carrier/ cofactor binding / phosphopantetheine binding (TAIR:AT2G44620.1); Has 4836 Blast hits to 4835 proteins in 1440 species: Archae - 0; Bacteria - 2685; Metazoa - 166; Fungi - 95; Plants - 135; Viruses - 2; Other Eukaryotes - 1753 (source: NCBI BLink).  protein_id AT5G47630.2p  transcript_id AT5G47630.2  protein_id AT5G47630.2p  transcript_id AT5G47630.2  
At5g47635	chr5:019307648	0.0	C/19307648-19307849,19307281-19307573	AT5G47635.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40113.1); Has 28 Blast hits to 28 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G47635.1p  transcript_id AT5G47635.1  protein_id AT5G47635.1p  transcript_id AT5G47635.1  
At5g47640	chr5:019309414	0.0	W/19309414-19309986	AT5G47640.1  CDS  gene_syn MNJ7.23, MNJ7_23, NF-YB2, NUCLEAR FACTOR Y, SUBUNIT B2  gene NF-YB2  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT B2 (NF-YB2); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3); transcription factor (TAIR:AT4G14540.1); Has 995 Blast hits to 995 proteins in 188 species: Archae - 0; Bacteria - 0; Metazoa - 385; Fungi - 225; Plants - 295; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT5G47640.1p  transcript_id AT5G47640.1  protein_id AT5G47640.1p  transcript_id AT5G47640.1  
At5g47650	chr5:019311914	0.0	C/19311914-19312084,19311533-19311598,19311292-19311429,19311117-19311194,19310988-19311038,19310858-19310892,19310677-19310785,19310391-19310579	AT5G47650.1  CDS  gene_syn ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, ATNUDT2, ATNUDX2, MNJ7.24, MNJ7_24  gene ATNUDT2  function Encodes an ADP-ribose pyrophosphatase that confers enhanced tolerance to oxidative stress.  go_component cytosol|GO:0005829|15878881|RCA  go_process response to oxidative stress|GO:0006979|18798872|IEP  go_process response to oxidative stress|GO:0006979|18798872|IMP  go_function hydrolase activity|GO:0016787||ISS  go_function ADP-ribose diphosphatase activity|GO:0047631|15878881|IDA  go_function NAD or NADH binding|GO:0051287|15878881|IDA  product ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2); ADP-ribose diphosphatase/ NAD or NADH binding / hydrolase  note ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2 (ATNUDT2); FUNCTIONS IN: ADP-ribose diphosphatase activity, hydrolase activity, NAD or NADH binding; INVOLVED IN: response to oxidative stress; LOCATED IN: cytosol; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), Anti-sense to fibroblast growth factor protein GFG (InterPro:IPR003293), NUDIX hydrolase, core (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: ATNUDT10 (Arabidopsis thaliana Nudix hydrolase homolog 10); ADP-ribose diphosphatase/ NAD or NADH binding / catalytic (TAIR:AT4G25434.1); Has 1722 Blast hits to 1722 proteins in 414 species: Archae - 30; Bacteria - 894; Metazoa - 198; Fungi - 16; Plants - 89; Viruses - 11; Other Eukaryotes - 484 (source: NCBI BLink).  protein_id AT5G47650.1p  transcript_id AT5G47650.1  protein_id AT5G47650.1p  transcript_id AT5G47650.1  
At5g47660	chr5:019313008	0.0	W/19313008-19313450,19313883-19314636	AT5G47660.1  CDS  gene_syn MNJ7.25, MNJ7_25  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product DNA-binding protein-related  note DNA-binding protein-related; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: AT-GTL1 (GT2-LIKE 1); DNA binding / transcription factor (TAIR:AT1G33240.1); Has 519 Blast hits to 421 proteins in 69 species: Archae - 0; Bacteria - 4; Metazoa - 121; Fungi - 17; Plants - 259; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).  protein_id AT5G47660.1p  transcript_id AT5G47660.1  protein_id AT5G47660.1p  transcript_id AT5G47660.1  
At5g47670	chr5:019315061	0.0	W/19315061-19315127,19315338-19315975	AT5G47670.1  CDS  gene_syn MNJ7.26, MNJ7_26, NF-YB6, NUCLEAR FACTOR Y, SUBUNIT B6  gene NF-YB6  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||IEA  go_process positive regulation of gene-specific transcription|GO:0043193|19207209|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|19207209|IDA  go_function transcription activator binding|GO:0033613|19207209|IPI  product NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6); transcription activator/ transcription activator binding / transcription factor  note NUCLEAR FACTOR Y, SUBUNIT B6 (NF-YB6); FUNCTIONS IN: transcription activator binding, transcription factor activity, transcription activator activity; INVOLVED IN: positive regulation of gene-specific transcription, regulation of transcription; LOCATED IN: nucleus, intracellular; EXPRESSED IN: embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: LEC1 (LEAFY COTYLEDON 1); transcription activator/ transcription factor (TAIR:AT1G21970.1); Has 958 Blast hits to 958 proteins in 178 species: Archae - 2; Bacteria - 0; Metazoa - 381; Fungi - 216; Plants - 293; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT5G47670.1p  transcript_id AT5G47670.1  protein_id AT5G47670.1p  transcript_id AT5G47670.1  
At5g47670	chr5:019315358	0.0	W/19315358-19315975	AT5G47670.2  CDS  gene_syn MNJ7.26, MNJ7_26, NF-YB6, NUCLEAR FACTOR Y, SUBUNIT B6  gene NF-YB6  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||IEA  go_process positive regulation of gene-specific transcription|GO:0043193|19207209|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|19207209|IDA  go_function transcription activator binding|GO:0033613|19207209|IPI  product NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6); transcription activator/ transcription activator binding / transcription factor  note NUCLEAR FACTOR Y, SUBUNIT B6 (NF-YB6); FUNCTIONS IN: transcription activator binding, transcription factor activity, transcription activator activity; INVOLVED IN: positive regulation of gene-specific transcription, regulation of transcription; LOCATED IN: intracellular, nucleus; EXPRESSED IN: embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: LEC1 (LEAFY COTYLEDON 1); transcription activator/ transcription factor (TAIR:AT1G21970.1); Has 958 Blast hits to 958 proteins in 178 species: Archae - 2; Bacteria - 0; Metazoa - 381; Fungi - 216; Plants - 293; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT5G47670.2p  transcript_id AT5G47670.2  protein_id AT5G47670.2p  transcript_id AT5G47670.2  
At5g47680	chr5:019316685	0.0	C/19316685-19317467,19316329-19316580	AT5G47680.1  CDS  gene_syn MNJ7.27, MNJ7_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA (guanine-N1-)-methyltransferase (InterPro:IPR016009), tRNA (guanine-N(1)-)-methyltransferase, metazoa (InterPro:IPR016653), tRNA (guanine-N1-)-methyltransferase, eukaryotic (InterPro:IPR007356); Has 9601 Blast hits to 4663 proteins in 357 species: Archae - 22; Bacteria - 498; Metazoa - 3588; Fungi - 1024; Plants - 270; Viruses - 29; Other Eukaryotes - 4170 (source: NCBI BLink).  protein_id AT5G47680.1p  transcript_id AT5G47680.1  protein_id AT5G47680.1p  transcript_id AT5G47680.1  
At5g47690	chr5:019317899	0.0	W/19317899-19317991,19318654-19318857,19318940-19319121,19319326-19319452,19319559-19319777,19319988-19320204,19320276-19320421,19320512-19320657,19320784-19320933,19321042-19321090,19321197-19321388,19321467-19321649,19321812-19321966,19322088-19322214,19322315-19322464,19322568-19322627,19322760-19322896,19322975-19323092,19323198-19323332,19323432-19323628,19323761-19323914,19324069-19324215,19324374-19324460,19324535-19325134,19325222-19325311,19325414-19325493,19325704-19325755,19325845-19325931,19326048-19326085,19326160-19326225,19326316-19326446,19326614-19326867,19326964-19327014	AT5G47690.3  CDS  go_function binding|GO:0005488||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: cotyledon, guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT1G77600.1); Has 6765 Blast hits to 5235 proteins in 377 species: Archae - 10; Bacteria - 207; Metazoa - 2980; Fungi - 748; Plants - 470; Viruses - 130; Other Eukaryotes - 2220 (source: NCBI BLink).  protein_id AT5G47690.3p  transcript_id AT5G47690.3  protein_id AT5G47690.3p  transcript_id AT5G47690.3  
At5g47690	chr5:019317899	0.0	W/19317899-19317991,19318654-19318857,19318940-19319121,19319326-19319452,19319559-19319777,19319988-19320204,19320276-19320421,19320512-19320657,19320784-19320933,19321042-19321090,19321197-19321388,19321467-19321649,19321812-19321966,19322088-19322214,19322315-19322464,19322568-19322627,19322760-19322896,19322975-19323092,19323198-19323332,19323432-19323628,19323761-19323914,19324069-19324215,19324374-19324460,19324535-19325134,19325222-19325311,19325414-19325493,19325704-19325755,19325845-19325931,19326048-19326085,19326160-19326225,19326316-19326446,19326617-19326867,19326964-19327014	AT5G47690.2  CDS  go_function binding|GO:0005488||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: cotyledon, guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT1G77600.1); Has 7226 Blast hits to 5605 proteins in 373 species: Archae - 6; Bacteria - 212; Metazoa - 3195; Fungi - 771; Plants - 495; Viruses - 134; Other Eukaryotes - 2413 (source: NCBI BLink).  protein_id AT5G47690.2p  transcript_id AT5G47690.2  protein_id AT5G47690.2p  transcript_id AT5G47690.2  
At5g47690	chr5:019317899	0.0	W/19317899-19317991,19318654-19318857,19318940-19319121,19319326-19319452,19319559-19319777,19319988-19320204,19320276-19320421,19320512-19320657,19320784-19320933,19321042-19321090,19321197-19321388,19321467-19321649,19321812-19321966,19322088-19322214,19322315-19322464,19322568-19322627,19322760-19322896,19322975-19323092,19323198-19323332,19323432-19323628,19323761-19323914,19324069-19324215,19324374-19324460,19324535-19325134,19325225-19325311,19325414-19325493,19325704-19325755,19325845-19325931,19326048-19326085,19326160-19326225,19326316-19326446,19326617-19326867,19326964-19327014	AT5G47690.1  CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_function binding|GO:0005488||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, nucleus, chloroplast; EXPRESSED IN: cotyledon, guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT1G77600.1); Has 16580 Blast hits to 10154 proteins in 545 species: Archae - 23; Bacteria - 494; Metazoa - 7958; Fungi - 1510; Plants - 822; Viruses - 235; Other Eukaryotes - 5538 (source: NCBI BLink).  protein_id AT5G47690.1p  transcript_id AT5G47690.1  protein_id AT5G47690.1p  transcript_id AT5G47690.1  
At5g47700	chr5:019328653	0.0	C/19328653-19328724,19328164-19328379,19328019-19328072	AT5G47700.1  CDS  gene_syn MCA23.2, MCA23_2  go_component plasma membrane|GO:0005886|17317660|IDA  go_process translational elongation|GO:0006414||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic ribosome|GO:0022626|17934214|IDA  go_process translational elongation|GO:0006414||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S acidic ribosomal protein P1 (RPP1C)  note 60S acidic ribosomal protein P1 (RPP1C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P1 (RPP1A) (TAIR:AT1G01100.4); Has 1683 Blast hits to 1682 proteins in 292 species: Archae - 49; Bacteria - 5; Metazoa - 682; Fungi - 360; Plants - 319; Viruses - 0; Other Eukaryotes - 268 (source: NCBI BLink).  protein_id AT5G47700.1p  transcript_id AT5G47700.1  protein_id AT5G47700.1p  transcript_id AT5G47700.1  
At5g47700	chr5:019328653	0.0	C/19328653-19328724,19328164-19328379,19328019-19328072	AT5G47700.2  CDS  gene_syn MCA23.2, MCA23_2  go_component plasma membrane|GO:0005886|17317660|IDA  go_process translational elongation|GO:0006414||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic ribosome|GO:0022626|17934214|IDA  go_process translational elongation|GO:0006414||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S acidic ribosomal protein P1 (RPP1C)  note 60S acidic ribosomal protein P1 (RPP1C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P1 (RPP1A) (TAIR:AT1G01100.4); Has 1683 Blast hits to 1682 proteins in 292 species: Archae - 49; Bacteria - 5; Metazoa - 682; Fungi - 360; Plants - 319; Viruses - 0; Other Eukaryotes - 268 (source: NCBI BLink).  protein_id AT5G47700.2p  transcript_id AT5G47700.2  protein_id AT5G47700.2p  transcript_id AT5G47700.2  
At5g47710	chr5:019330470	0.0	W/19330470-19330580,19330710-19330805,19330885-19331178	AT5G47710.1  CDS  gene_syn MCA23.3, MCA23_3  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT1G70790.2); Has 3689 Blast hits to 3095 proteins in 195 species: Archae - 0; Bacteria - 0; Metazoa - 2170; Fungi - 415; Plants - 810; Viruses - 0; Other Eukaryotes - 294 (source: NCBI BLink).  protein_id AT5G47710.1p  transcript_id AT5G47710.1  protein_id AT5G47710.1p  transcript_id AT5G47710.1  
At5g47710	chr5:019330470	0.0	W/19330470-19330580,19330710-19330805,19330885-19331178	AT5G47710.2  CDS  gene_syn MCA23.3, MCA23_3  go_component plasma membrane|GO:0005886|17644812|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT1G70790.2); Has 3689 Blast hits to 3095 proteins in 195 species: Archae - 0; Bacteria - 0; Metazoa - 2170; Fungi - 415; Plants - 810; Viruses - 0; Other Eukaryotes - 294 (source: NCBI BLink).  protein_id AT5G47710.2p  transcript_id AT5G47710.2  protein_id AT5G47710.2p  transcript_id AT5G47710.2  
At5g47720	chr5:019331762	0.0	W/19331762-19331801,19331927-19332025,19332106-19332279,19332368-19332473,19332582-19332720,19332844-19332921,19333004-19333069,19333143-19333228,19333337-19333547,19333635-19333676,19333757-19333843,19333920-19334005,19334112-19334145	AT5G47720.2  CDS  gene_syn MCA23.4, MCA23_4  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_function acetyl-CoA C-acetyltransferase activity|GO:0003985||ISS  product acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative  note acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative; FUNCTIONS IN: acetyl-CoA C-acetyltransferase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Thiolase (InterPro:IPR002155), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: ACAT2 (ACETOACETYL-COA THIOLASE 2); acetyl-CoA C-acetyltransferase/ catalytic (TAIR:AT5G48230.2); Has 16032 Blast hits to 16016 proteins in 1334 species: Archae - 254; Bacteria - 8419; Metazoa - 813; Fungi - 434; Plants - 145; Viruses - 0; Other Eukaryotes - 5967 (source: NCBI BLink).  protein_id AT5G47720.2p  transcript_id AT5G47720.2  protein_id AT5G47720.2p  transcript_id AT5G47720.2  
At5g47720	chr5:019331762	0.0	W/19331762-19331801,19331927-19332025,19332106-19332279,19332368-19332473,19332582-19332720,19332844-19332921,19333004-19333069,19333143-19333228,19333337-19333547,19333635-19333676,19333757-19333843,19333920-19334005,19334112-19334145	AT5G47720.4  CDS  gene_syn MCA23.4, MCA23_4  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_function acetyl-CoA C-acetyltransferase activity|GO:0003985||ISS  product acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative  note acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative; FUNCTIONS IN: acetyl-CoA C-acetyltransferase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Thiolase (InterPro:IPR002155), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: ACAT2 (ACETOACETYL-COA THIOLASE 2); acetyl-CoA C-acetyltransferase/ catalytic (TAIR:AT5G48230.2); Has 16032 Blast hits to 16016 proteins in 1334 species: Archae - 254; Bacteria - 8419; Metazoa - 813; Fungi - 434; Plants - 145; Viruses - 0; Other Eukaryotes - 5967 (source: NCBI BLink).  protein_id AT5G47720.4p  transcript_id AT5G47720.4  protein_id AT5G47720.4p  transcript_id AT5G47720.4  
At5g47720	chr5:019331762	0.0	W/19331762-19331801,19331927-19332025,19332106-19332279,19332368-19332473,19332582-19332720,19332844-19332921,19333004-19333069,19333143-19333228,19333337-19333547,19333635-19333676,19333757-19333843,19333920-19334009	AT5G47720.1  CDS  gene_syn MCA23.4, MCA23_4  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_function acetyl-CoA C-acetyltransferase activity|GO:0003985||ISS  product acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative  note acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative; FUNCTIONS IN: acetyl-CoA C-acetyltransferase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase (InterPro:IPR002155), Thiolase-like (InterPro:IPR016039), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: ACAT2 (ACETOACETYL-COA THIOLASE 2); acetyl-CoA C-acetyltransferase/ catalytic (TAIR:AT5G48230.2); Has 16020 Blast hits to 16004 proteins in 1334 species: Archae - 254; Bacteria - 8408; Metazoa - 813; Fungi - 434; Plants - 145; Viruses - 0; Other Eukaryotes - 5966 (source: NCBI BLink).  protein_id AT5G47720.1p  transcript_id AT5G47720.1  protein_id AT5G47720.1p  transcript_id AT5G47720.1  
At5g47720	chr5:019331762	0.0	W/19331762-19331801,19331927-19332025,19332106-19332279,19332368-19332473,19332582-19332720,19332844-19332921,19333004-19333069,19333143-19333228,19333337-19333547,19333635-19333676,19333757-19333843,19333920-19334009	AT5G47720.3  CDS  gene_syn MCA23.4, MCA23_4  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_function acetyl-CoA C-acetyltransferase activity|GO:0003985||ISS  product acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative  note acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative; FUNCTIONS IN: acetyl-CoA C-acetyltransferase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase (InterPro:IPR002155), Thiolase-like (InterPro:IPR016039), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: ACAT2 (ACETOACETYL-COA THIOLASE 2); acetyl-CoA C-acetyltransferase/ catalytic (TAIR:AT5G48230.2); Has 16020 Blast hits to 16004 proteins in 1334 species: Archae - 254; Bacteria - 8408; Metazoa - 813; Fungi - 434; Plants - 145; Viruses - 0; Other Eukaryotes - 5966 (source: NCBI BLink).  protein_id AT5G47720.3p  transcript_id AT5G47720.3  protein_id AT5G47720.3p  transcript_id AT5G47720.3  
At5g47720	chr5:019331866	0.0	W/19331866-19332025,19332106-19332279,19332368-19332473,19332582-19332720,19332844-19332921,19333004-19333069,19333143-19333228,19333337-19333547,19333635-19333676,19333757-19333843,19333920-19334009	AT5G47720.5  CDS  gene_syn MCA23.4, MCA23_4  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_function acetyl-CoA C-acetyltransferase activity|GO:0003985||ISS  product acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative  note acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative; FUNCTIONS IN: acetyl-CoA C-acetyltransferase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase (InterPro:IPR002155), Thiolase-like (InterPro:IPR016039), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: ACAT2 (ACETOACETYL-COA THIOLASE 2); acetyl-CoA C-acetyltransferase/ catalytic (TAIR:AT5G48230.2); Has 16001 Blast hits to 15985 proteins in 1334 species: Archae - 252; Bacteria - 8398; Metazoa - 812; Fungi - 434; Plants - 145; Viruses - 0; Other Eukaryotes - 5960 (source: NCBI BLink).  protein_id AT5G47720.5p  transcript_id AT5G47720.5  protein_id AT5G47720.5p  transcript_id AT5G47720.5  
At5g47730	chr5:019336156	0.0	C/19336156-19336158,19336016-19336069,19335853-19335930,19335716-19335769,19335572-19335631,19335395-19335490,19335171-19335272,19335005-19335085,19334592-19334924	AT5G47730.2  CDS  gene_syn MCA23.5, MCA23_5  go_component cellular_component|GO:0005575||ND  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  go_function binding|GO:0005488||ISS  product SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putative  note SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putative; FUNCTIONS IN: transporter activity, binding; INVOLVED IN: transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein (TAIR:AT1G55840.2); Has 937 Blast hits to 937 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 374; Fungi - 198; Plants - 260; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT5G47730.2p  transcript_id AT5G47730.2  protein_id AT5G47730.2p  transcript_id AT5G47730.2  
At5g47730	chr5:019336156	0.0	C/19336156-19336158,19336016-19336069,19335853-19335930,19335716-19335769,19335572-19335631,19335395-19335490,19335171-19335272,19335005-19335085,19334592-19334924	AT5G47730.3  CDS  gene_syn MCA23.5, MCA23_5  go_component cellular_component|GO:0005575||ND  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  go_function binding|GO:0005488||ISS  product SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putative  note SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putative; FUNCTIONS IN: transporter activity, binding; INVOLVED IN: transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein (TAIR:AT1G55840.2); Has 937 Blast hits to 937 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 374; Fungi - 198; Plants - 260; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT5G47730.3p  transcript_id AT5G47730.3  protein_id AT5G47730.3p  transcript_id AT5G47730.3  
At5g47730	chr5:019336564	0.0	C/19336564-19336618,19336448-19336476,19336156-19336239,19336016-19336069,19335853-19335930,19335716-19335769,19335572-19335631,19335395-19335490,19335171-19335272,19335005-19335085,19334592-19334924	AT5G47730.1  CDS  gene_syn MCA23.5, MCA23_5  go_component cellular_component|GO:0005575||ND  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  go_function binding|GO:0005488||ISS  product SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putative  note SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putative; FUNCTIONS IN: transporter activity, binding; INVOLVED IN: transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein (TAIR:AT1G55840.1); Has 1254 Blast hits to 1254 proteins in 165 species: Archae - 0; Bacteria - 0; Metazoa - 467; Fungi - 271; Plants - 377; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).  protein_id AT5G47730.1p  transcript_id AT5G47730.1  protein_id AT5G47730.1p  transcript_id AT5G47730.1  
At5g47740	chr5:019338688	0.0	W/19338688-19338955,19339036-19339154,19339249-19339364,19339452-19339683	AT5G47740.1  CDS  gene_syn MCA23.6, MCA23_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729); BEST Arabidopsis thaliana protein match is: protein kinase family protein / U-box domain-containing protein (TAIR:AT2G45910.1); Has 196 Blast hits to 194 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 196; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G47740.1p  transcript_id AT5G47740.1  protein_id AT5G47740.1p  transcript_id AT5G47740.1  
At5g47750	chr5:019340984	0.0	C/19340984-19341864,19339947-19340826	AT5G47750.1  CDS  gene_syn D6 PROTEIN KINASE LIKE 2, D6PKL2, MCA23.7, MCA23_7, PK5  gene D6PKL2  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleolus|GO:0005730|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product D6PKL2 (D6 PROTEIN KINASE LIKE 2); kinase  note D6 PROTEIN KINASE LIKE 2 (D6PKL2); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleolus, nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: D6PKL1 (D6 PROTEIN KINASE LIKE 1); kinase (TAIR:AT4G26610.1); Has 86667 Blast hits to 62902 proteins in 1914 species: Archae - 19; Bacteria - 7097; Metazoa - 40115; Fungi - 8950; Plants - 11718; Viruses - 311; Other Eukaryotes - 18457 (source: NCBI BLink).  protein_id AT5G47750.1p  transcript_id AT5G47750.1  protein_id AT5G47750.1p  transcript_id AT5G47750.1  
At5g47760	chr5:019344901	0.0	C/19344901-19344979,19344757-19344824,19344592-19344687,19344440-19344511,19344282-19344353,19344048-19344107,19343889-19343941,19343706-19343803,19343523-19343622,19343334-19343437,19343121-19343224	AT5G47760.1  CDS  gene_syn ARABIDOPSIS THALIANA 2-PHOSPHOGLYCOLATE PHOSPHATASE 2, ATPGLP2, ATPK5, MCA23.8, MCA23_8, PGLP2  gene ATPGLP2  function serine/threonine protein kinase  go_component chloroplast|GO:0009507|18431481|IDA  go_process metabolic process|GO:0008152||IEA  go_function protein serine/threonine kinase activity|GO:0004674|8444349|ISS  go_function phosphoglycolate phosphatase activity|GO:0008967||ISS  product ATPGLP2 (ARABIDOPSIS THALIANA 2-PHOSPHOGLYCOLATE PHOSPHATASE 2); phosphoglycolate phosphatase/ protein serine/threonine kinase  note ARABIDOPSIS THALIANA 2-PHOSPHOGLYCOLATE PHOSPHATASE 2 (ATPGLP2); FUNCTIONS IN: protein serine/threonine kinase activity, phosphoglycolate phosphatase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), HAD-superfamily hydrolase, subfamily IIA (InterPro:IPR006357), 2-phosphoglycolate phosphatase, eukaryotic (InterPro:IPR006349); BEST Arabidopsis thaliana protein match is: phosphoglycolate phosphatase, putative (TAIR:AT5G36790.2); Has 2868 Blast hits to 2866 proteins in 721 species: Archae - 72; Bacteria - 1299; Metazoa - 509; Fungi - 116; Plants - 65; Viruses - 0; Other Eukaryotes - 807 (source: NCBI BLink).  protein_id AT5G47760.1p  transcript_id AT5G47760.1  protein_id AT5G47760.1p  transcript_id AT5G47760.1  
At5g47770	chr5:019345297	0.0	W/19345297-19345533,19345607-19345631,19345725-19345840,19345947-19346033,19346097-19346213,19346296-19346384,19346491-19346542,19346661-19346756,19346833-19346877,19346961-19347050,19347129-19347200,19347287-19347415	AT5G47770.1  CDS  gene_syn FARNESYL DIPHOSPHATE SYNTHASE 1, FPS1, MCA23.9, MCA23_9  gene FPS1  function Encodes a protein with farnesyl diphosphate synthase activity.  go_process isoprenoid biosynthetic process|GO:0008299||IEA  go_process farnesyl diphosphate biosynthetic process|GO:0045337||ISS  go_function dimethylallyltranstransferase activity|GO:0004161|7858223|IGI  go_function geranyltranstransferase activity|GO:0004337|7858223|IGI  product FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1); dimethylallyltranstransferase/ geranyltranstransferase  note FARNESYL DIPHOSPHATE SYNTHASE 1 (FPS1); FUNCTIONS IN: geranyltranstransferase activity, dimethylallyltranstransferase activity; INVOLVED IN: farnesyl diphosphate biosynthetic process, isoprenoid biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2); dimethylallyltranstransferase/ geranyltranstransferase (TAIR:AT4G17190.1); Has 3844 Blast hits to 3840 proteins in 1071 species: Archae - 130; Bacteria - 1918; Metazoa - 209; Fungi - 148; Plants - 151; Viruses - 0; Other Eukaryotes - 1288 (source: NCBI BLink).  protein_id AT5G47770.1p  transcript_id AT5G47770.1  protein_id AT5G47770.1p  transcript_id AT5G47770.1  
At5g47780	chr5:019347991	0.0	W/19347991-19348096,19348175-19348209,19348290-19348331,19348420-19348489,19348568-19348680,19348781-19349055,19349134-19349491,19349576-19350151,19350242-19350517	AT5G47780.1  CDS  gene_syn GAUT4, Galacturonosyltransferase 4, JS36L, LGT3, MCA23.10, MCA23_10  gene GAUT4  function Encodes a protein with putative galacturonosyltransferase activity.  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS  product GAUT4 (Galacturonosyltransferase 4); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups  note Galacturonosyltransferase 4 (GAUT4); FUNCTIONS IN: polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: GAUT1 (GALACTURONOSYLTRANSFERASE 1); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT3G61130.1); Has 793 Blast hits to 790 proteins in 133 species: Archae - 0; Bacteria - 213; Metazoa - 130; Fungi - 0; Plants - 435; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT5G47780.1p  transcript_id AT5G47780.1  protein_id AT5G47780.1p  transcript_id AT5G47780.1  
At5g47790	chr5:019351396	0.0	W/19351396-19351751,19351826-19352579	AT5G47790.1  CDS  gene_syn MCA23.11, MCA23_11  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product forkhead-associated domain-containing protein / FHA domain-containing protein  note forkhead-associated domain-containing protein / FHA domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: forkhead-associated domain-containing protein / FHA domain-containing protein (TAIR:AT5G38840.1); Has 794 Blast hits to 790 proteins in 194 species: Archae - 2; Bacteria - 199; Metazoa - 374; Fungi - 45; Plants - 66; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT5G47790.1p  transcript_id AT5G47790.1  protein_id AT5G47790.1p  transcript_id AT5G47790.1  
At5g47800	chr5:019354171	0.0	W/19354171-19354229,19354300-19354369,19354451-19355596,19355722-19356126	AT5G47800.1  CDS  gene_syn MCA23.12, MCA23_12  go_process response to light stimulus|GO:0009416||IEA  go_function signal transducer activity|GO:0004871||IEA  go_function protein binding|GO:0005515||IEA  go_process response to light stimulus|GO:0009416||ISS  go_function signal transducer activity|GO:0004871||ISS  product phototropic-responsive NPH3 family protein  note phototropic-responsive NPH3 family protein; FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: response to light stimulus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: phototropic-responsive NPH3 family protein (TAIR:AT1G67900.2); Has 427 Blast hits to 417 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 427; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G47800.1p  transcript_id AT5G47800.1  protein_id AT5G47800.1p  transcript_id AT5G47800.1  
At5g47810	chr5:019357486	0.0	C/19357486-19357989,19356569-19357399	AT5G47810.1  CDS  gene_syn MCA23.13, MCA23_13, PFK2, PHOSPHOFRUCTOKINASE 2  gene PFK2  go_component cytosol|GO:0005829|17485088|IDA  go_component 6-phosphofructokinase complex|GO:0005945||ISS  go_process glycolysis|GO:0006096|17485088|ISS  go_process glycolysis|GO:0006096||ISS  go_function 6-phosphofructokinase activity|GO:0003872|17485088|ISS  go_function 6-phosphofructokinase activity|GO:0003872||ISS  product PFK2 (PHOSPHOFRUCTOKINASE 2); 6-phosphofructokinase  note PHOSPHOFRUCTOKINASE 2 (PFK2); FUNCTIONS IN: 6-phosphofructokinase activity; INVOLVED IN: glycolysis; LOCATED IN: cytosol, 6-phosphofructokinase complex; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase TP0108 (InterPro:IPR012004), Phosphofructokinase (InterPro:IPR000023); BEST Arabidopsis thaliana protein match is: PFK3 (PHOSPHOFRUCTOKINASE 3); 6-phosphofructokinase (TAIR:AT4G26270.1); Has 4565 Blast hits to 4222 proteins in 1114 species: Archae - 20; Bacteria - 2500; Metazoa - 504; Fungi - 230; Plants - 224; Viruses - 2; Other Eukaryotes - 1085 (source: NCBI BLink).  protein_id AT5G47810.1p  transcript_id AT5G47810.1  protein_id AT5G47810.1p  transcript_id AT5G47810.1  
At5g47815	chr5:019358618	0.0	W/19358618-19363928	AT5G47815.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 3.0e-38 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)  
At5g47818	chr5:019364137	0.0	C/19364137-19364679	AT5G47818.1  pseudogenic_transcript  pseudo  function unknown pseudogene  
At5g47820	chr5:019366505	0.0	W/19366505-19366630,19367147-19367443,19367529-19367788,19367913-19368100,19368190-19368314,19368398-19368434,19368545-19368636,19368734-19368844,19368911-19369036,19369119-19369212,19369287-19369396,19369504-19369602,19369691-19369915,19370041-19370121,19370225-19370296,19370424-19370517,19370724-19370755,19370849-19370946,19371046-19371144,19371214-19371435,19371527-19371674,19371765-19371917,19372011-19372229	AT5G47820.1  CDS  gene_syn FRA1, FRAGILE FIBER 1, MCA23.16, MCA23_16  gene FRA1  function encodes a kinesin-like protein with an N-terminal microtubule binding motor domain. Protein is localized to the periphery of the cytoplasm and mutants in the gene exhibit altered orientation of cellulose microfibrils and reduced mechanical strength of fibers.  go_component cytoplasm|GO:0005737|12468730|IDA  go_process cellulose microfibril organization|GO:0010215|12468730|IMP  go_function microtubule motor activity|GO:0003777|12468730|ISS  go_function microtubule motor activity|GO:0003777||ISS  product FRA1 (FRAGILE FIBER 1); microtubule motor  note FRAGILE FIBER 1 (FRA1); FUNCTIONS IN: microtubule motor activity; INVOLVED IN: cellulose microfibril organization; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: KICP-02; ATP binding / microtubule motor (TAIR:AT3G50240.1); Has 43951 Blast hits to 30165 proteins in 1196 species: Archae - 255; Bacteria - 3017; Metazoa - 23646; Fungi - 3323; Plants - 1817; Viruses - 118; Other Eukaryotes - 11775 (source: NCBI BLink).  protein_id AT5G47820.1p  transcript_id AT5G47820.1  protein_id AT5G47820.1p  transcript_id AT5G47820.1  
At5g47820	chr5:019366505	0.0	W/19366505-19366630,19367147-19367443,19367529-19367788,19367913-19368100,19368190-19368314,19368398-19368434,19368545-19368636,19368734-19368844,19368911-19369036,19369119-19369212,19369287-19369396,19369504-19369602,19369691-19369915,19370041-19370121,19370225-19370296,19370424-19370517,19370724-19370755,19370849-19370946,19371046-19371144,19371214-19371435,19371527-19371674,19371765-19371917,19372011-19372229	AT5G47820.2  CDS  gene_syn FRA1, FRAGILE FIBER 1, MCA23.16, MCA23_16  gene FRA1  function encodes a kinesin-like protein with an N-terminal microtubule binding motor domain. Protein is localized to the periphery of the cytoplasm and mutants in the gene exhibit altered orientation of cellulose microfibrils and reduced mechanical strength of fibers.  go_component cytoplasm|GO:0005737|12468730|IDA  go_process cellulose microfibril organization|GO:0010215|12468730|IMP  go_function microtubule motor activity|GO:0003777|12468730|ISS  go_function microtubule motor activity|GO:0003777||ISS  product FRA1 (FRAGILE FIBER 1); microtubule motor  note FRAGILE FIBER 1 (FRA1); FUNCTIONS IN: microtubule motor activity; INVOLVED IN: cellulose microfibril organization; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: KICP-02; ATP binding / microtubule motor (TAIR:AT3G50240.1); Has 43951 Blast hits to 30165 proteins in 1196 species: Archae - 255; Bacteria - 3017; Metazoa - 23646; Fungi - 3323; Plants - 1817; Viruses - 118; Other Eukaryotes - 11775 (source: NCBI BLink).  protein_id AT5G47820.2p  transcript_id AT5G47820.2  protein_id AT5G47820.2p  transcript_id AT5G47820.2  
At5g47830	chr5:019373013	0.0	C/19373013-19373384	AT5G47830.2  CDS  gene_syn MCA23.17, MCA23_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G47830.2p  transcript_id AT5G47830.2  protein_id AT5G47830.2p  transcript_id AT5G47830.2  
At5g47830	chr5:019374157	0.0	C/19374157-19374300,19373013-19373390	AT5G47830.1  CDS  gene_syn MCA23.17, MCA23_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 26 Blast hits to 26 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G47830.1p  transcript_id AT5G47830.1  protein_id AT5G47830.1p  transcript_id AT5G47830.1  
At5g47840	chr5:019375488	0.0	W/19375488-19375652,19375738-19375833,19376962-19377225,19377519-19377665,19377781-19377855,19377954-19378058	AT5G47840.1  CDS  gene_syn AMK2, Adenosine monophosphate kinase, MCA23.18, MCA23_18  gene AMK2  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_process anaerobic respiration|GO:0009061||IEA  go_process nucleotide metabolic process|GO:0009117||IEA  go_function adenylate kinase activity|GO:0004017||IEA  go_function ATP binding|GO:0005524||IEA  go_function phosphotransferase activity, phosphate group as acceptor|GO:0016776||IEA  go_function nucleotide kinase activity|GO:0019201||IEA  go_function nucleobase, nucleoside, nucleotide kinase activity|GO:0019205||IEA  go_function adenylate kinase activity|GO:0004017||ISS  product AMK2 (Adenosine monophosphate kinase); ATP binding / adenylate kinase/ nucleobase, nucleoside, nucleotide kinase/ nucleotide kinase/ phosphotransferase, phosphate group as acceptor  note Adenosine monophosphate kinase (AMK2); FUNCTIONS IN: nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, ATP binding, adenylate kinase activity, phosphotransferase activity, phosphate group as acceptor; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Adenylate kinase, zinc-finger lid region (InterPro:IPR007862), Adenylate kinase, subfamily (InterPro:IPR006259), Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: adenylate kinase family protein (TAIR:AT5G35170.2); Has 8772 Blast hits to 8627 proteins in 1854 species: Archae - 64; Bacteria - 4464; Metazoa - 1141; Fungi - 289; Plants - 247; Viruses - 0; Other Eukaryotes - 2567 (source: NCBI BLink).  protein_id AT5G47840.1p  transcript_id AT5G47840.1  protein_id AT5G47840.1p  transcript_id AT5G47840.1  
At5g47850	chr5:019378803	0.0	C/19378803-19381058	AT5G47850.1  CDS  gene_syn ARABIDOPSIS THALIANA CRINKLY4 RELATED 4, CCR4, MCA23.19, MCA23_19  gene CCR4  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product CCR4 (ARABIDOPSIS THALIANA CRINKLY4 RELATED 4); kinase  note ARABIDOPSIS THALIANA CRINKLY4 RELATED 4 (CCR4); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CCR3 (ARABIDOPSIS THALIANA CRINKLY4 RELATED 3); kinase (TAIR:AT3G55950.1); Has 84020 Blast hits to 82926 proteins in 3082 species: Archae - 56; Bacteria - 7330; Metazoa - 36894; Fungi - 6596; Plants - 18463; Viruses - 525; Other Eukaryotes - 14156 (source: NCBI BLink).  protein_id AT5G47850.1p  transcript_id AT5G47850.1  protein_id AT5G47850.1p  transcript_id AT5G47850.1  
At5g47860	chr5:019381656	0.0	W/19381656-19381864,19381942-19382011,19382210-19382334,19382459-19382567,19382688-19382751,19382838-19382893,19383066-19383173,19383458-19383607,19383726-19383896,19384077-19384310	AT5G47860.1  CDS  gene_syn MCA23.20, MCA23_20  go_component chloroplast|GO:0009507|18431481|IDA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1350 (InterPro:IPR010765); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43540.1); Has 289 Blast hits to 289 proteins in 66 species: Archae - 0; Bacteria - 111; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).  protein_id AT5G47860.1p  transcript_id AT5G47860.1  protein_id AT5G47860.1p  transcript_id AT5G47860.1  
At5g47870	chr5:019385474	0.0	C/19385474-19385808,19385260-19385389,19384555-19384689	AT5G47870.1  CDS  gene_syn MCA23.21, MCA23_21  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G71310.2); Has 55 Blast hits to 55 proteins in 12 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G47870.1p  transcript_id AT5G47870.1  protein_id AT5G47870.1p  transcript_id AT5G47870.1  
At5g47880	chr5:019386555	0.0	C/19386555-19387865	AT5G47880.1  CDS  gene_syn ERF1-1, EUKARYOTIC RELEASE FACTOR 1, EUKARYOTIC RELEASE FACTOR 1-1, MCA23.22, MCA23_22  gene ERF1-1  function Encodes a eukaryotic release factor 1 homolog. Cosuppression of the gene s expression results affects cell elongation of the inflorescence stem, specifically the internodes, and radial cell division. Expression of the protein is primarily observed in the vascular system and in actively growing and elongating zones.  go_component cytoplasm|GO:0005737||IEA  go_process translational termination|GO:0006415|15474304|IGI  go_process translational termination|GO:0006415||ISS  go_function translation release factor activity|GO:0003747|15474304|IGI  go_function translation release factor activity|GO:0003747||ISS  product ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1); translation release factor  note EUKARYOTIC RELEASE FACTOR 1-1 (ERF1-1); FUNCTIONS IN: translation release factor activity; INVOLVED IN: translational termination; LOCATED IN: cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: eRF1 domain 2 (InterPro:IPR005141), eRF1 domain 3 (InterPro:IPR005142), eRF1 domain 1 (InterPro:IPR005140), Peptide chain release factor eRF/aRF subunit 1 (InterPro:IPR004403); BEST Arabidopsis thaliana protein match is: ERF1-3 (eukaryotic release factor 1-3); translation release factor (TAIR:AT3G26618.1); Has 800 Blast hits to 798 proteins in 276 species: Archae - 187; Bacteria - 6; Metazoa - 164; Fungi - 97; Plants - 79; Viruses - 1; Other Eukaryotes - 266 (source: NCBI BLink).  protein_id AT5G47880.1p  transcript_id AT5G47880.1  protein_id AT5G47880.1p  transcript_id AT5G47880.1  
At5g47880	chr5:019386555	0.0	C/19386555-19387865	AT5G47880.2  CDS  gene_syn ERF1-1, EUKARYOTIC RELEASE FACTOR 1, EUKARYOTIC RELEASE FACTOR 1-1, MCA23.22, MCA23_22  gene ERF1-1  function Encodes a eukaryotic release factor 1 homolog. Cosuppression of the gene s expression results affects cell elongation of the inflorescence stem, specifically the internodes, and radial cell division. Expression of the protein is primarily observed in the vascular system and in actively growing and elongating zones.  go_component cytoplasm|GO:0005737||IEA  go_process translational termination|GO:0006415|15474304|IGI  go_process translational termination|GO:0006415||ISS  go_function translation release factor activity|GO:0003747|15474304|IGI  go_function translation release factor activity|GO:0003747||ISS  product ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1); translation release factor  note EUKARYOTIC RELEASE FACTOR 1-1 (ERF1-1); FUNCTIONS IN: translation release factor activity; INVOLVED IN: translational termination; LOCATED IN: cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: eRF1 domain 2 (InterPro:IPR005141), eRF1 domain 3 (InterPro:IPR005142), eRF1 domain 1 (InterPro:IPR005140), Peptide chain release factor eRF/aRF subunit 1 (InterPro:IPR004403); BEST Arabidopsis thaliana protein match is: ERF1-3 (eukaryotic release factor 1-3); translation release factor (TAIR:AT3G26618.1); Has 800 Blast hits to 798 proteins in 276 species: Archae - 187; Bacteria - 6; Metazoa - 164; Fungi - 97; Plants - 79; Viruses - 1; Other Eukaryotes - 266 (source: NCBI BLink).  protein_id AT5G47880.2p  transcript_id AT5G47880.2  protein_id AT5G47880.2p  transcript_id AT5G47880.2  
At5g47890	chr5:019388806	0.0	W/19388806-19388891,19388989-19389095,19390309-19390409	AT5G47890.1  CDS  gene_syn MCA23.23, MCA23_23  go_component mitochondrion|GO:0005739||ISS  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process biological_process|GO:0008150||ND  go_function oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor|GO:0016655||ISS  product NADH-ubiquinone oxidoreductase B8 subunit, putative  note NADH-ubiquinone oxidoreductase B8 subunit, putative; FUNCTIONS IN: oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, respiratory chain complex I; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein/NADH dehydrogenase domain (InterPro:IPR007741), NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 2 (InterPro:IPR016464); Has 239 Blast hits to 239 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 117; Fungi - 63; Plants - 30; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT5G47890.1p  transcript_id AT5G47890.1  protein_id AT5G47890.1p  transcript_id AT5G47890.1  
At5g47900	chr5:019392408	0.0	W/19392408-19392581,19392659-19392796,19392883-19392964,19393048-19393124,19393230-19393336,19393412-19393529,19393606-19393731,19393812-19393903,19393996-19394062,19394346-19394424,19394538-19394629,19394714-19394857,19394937-19394963	AT5G47900.1  CDS  gene_syn MCA23.24, MCA23_24  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27730.1); Has 677 Blast hits to 602 proteins in 130 species: Archae - 0; Bacteria - 264; Metazoa - 99; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink).  protein_id AT5G47900.1p  transcript_id AT5G47900.1  protein_id AT5G47900.1p  transcript_id AT5G47900.1  
At5g47900	chr5:019392408	0.0	W/19392408-19392581,19392659-19392796,19392883-19392964,19393048-19393124,19393230-19393336,19393412-19393529,19393606-19393731,19393812-19393903,19393996-19394161	AT5G47900.2  CDS  gene_syn MCA23.24, MCA23_24  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27730.1); Has 557 Blast hits to 556 proteins in 130 species: Archae - 0; Bacteria - 214; Metazoa - 94; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).  protein_id AT5G47900.2p  transcript_id AT5G47900.2  protein_id AT5G47900.2p  transcript_id AT5G47900.2  
At5g47900	chr5:019392408	0.0	W/19392408-19392581,19392659-19392796,19392883-19392964,19393048-19393124,19393230-19393336,19393412-19393529,19393606-19393731,19393820-19393885	AT5G47900.5  CDS  gene_syn MCA23.24, MCA23_24  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27730.1).  protein_id AT5G47900.5p  transcript_id AT5G47900.5  protein_id AT5G47900.5p  transcript_id AT5G47900.5  
At5g47900	chr5:019392408	0.0	W/19392408-19392581,19392659-19392796,19392883-19392964,19393048-19393124,19393230-19393336,19393412-19393529,19393615-19393731,19393820-19393885	AT5G47900.3  CDS  gene_syn MCA23.24, MCA23_24  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27730.1); Has 556 Blast hits to 555 proteins in 130 species: Archae - 0; Bacteria - 214; Metazoa - 93; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).  protein_id AT5G47900.3p  transcript_id AT5G47900.3  protein_id AT5G47900.3p  transcript_id AT5G47900.3  
At5g47900	chr5:019392426	0.0	W/19392426-19392581,19392659-19392796,19392883-19392964,19393048-19393124,19393230-19393336,19393412-19393529,19393606-19393731,19393812-19393903,19393996-19394062,19394162-19394213,19394346-19394424,19394592-19394634,19394714-19394857,19394937-19394963	AT5G47900.4  CDS  gene_syn MCA23.24, MCA23_24  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27730.1).  protein_id AT5G47900.4p  transcript_id AT5G47900.4  protein_id AT5G47900.4p  transcript_id AT5G47900.4  
At5g47900	chr5:019392556	0.0	W/19392556-19392581,19392897-19392964,19393048-19393124,19393230-19393336,19393412-19393529,19393606-19393731,19393812-19393903,19393996-19394062,19394346-19394424,19394538-19394629,19394714-19394857,19394937-19394963	AT5G47900.6  CDS  gene_syn MCA23.24, MCA23_24  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27730.1).  protein_id AT5G47900.6p  transcript_id AT5G47900.6  protein_id AT5G47900.6p  transcript_id AT5G47900.6  
At5g47910	chr5:019397585	0.0	W/19397585-19398212,19398305-19398467,19398661-19398709,19399055-19399168,19399610-19400419,19400518-19400613,19400761-19401556,19401659-19401768	AT5G47910.1  CDS  gene_syn ATRBOHD, MCA23.25, MCA23_25, RBOHD, RESPIRATORY BURST OXIDASE, RESPIRATORY BURST OXIDASE HOMOLOGUE D  gene RBOHD  function NADPH/respiratory burst oxidase protein D (RbohD).Interacts with AtrbohF gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process oxygen and reactive oxygen species metabolic process|GO:0006800|11756663|IMP  go_process oxygen and reactive oxygen species metabolic process|GO:0006800|15705948|TAS  go_process defense response|GO:0006952|11756663|IMP  go_process response to heat|GO:0009408|15923322|IMP  go_process negative regulation of programmed cell death|GO:0043069|16170317|IGI  go_function NAD(P)H oxidase activity|GO:0016174|15608336|TAS  product RBOHD (RESPIRATORY BURST OXIDASE HOMOLOGUE D); NAD(P)H oxidase  note RESPIRATORY BURST OXIDASE HOMOLOGUE D (RBOHD); FUNCTIONS IN: NAD(P)H oxidase activity; INVOLVED IN: oxygen and reactive oxygen species metabolic process, response to heat, negative regulation of programmed cell death, defense response; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-HAND 1 (InterPro:IPR018247), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), NADPH oxidase Respiratory burst (InterPro:IPR013623), Ferric reductase, NAD binding (InterPro:IPR013121), EF-HAND 2 (InterPro:IPR018249), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: RHD2 (ROOT HAIR DEFECTIVE 2); NAD(P)H oxidase (TAIR:AT5G51060.1); Has 1594 Blast hits to 1507 proteins in 250 species: Archae - 6; Bacteria - 146; Metazoa - 590; Fungi - 417; Plants - 278; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).  protein_id AT5G47910.1p  transcript_id AT5G47910.1  protein_id AT5G47910.1p  transcript_id AT5G47910.1  
At5g47920	chr5:019403458	0.0	C/19403458-19404021	AT5G47920.1  CDS  gene_syn MCA23.26, MCA23_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13880.1); Has 54 Blast hits to 54 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G47920.1p  transcript_id AT5G47920.1  protein_id AT5G47920.1p  transcript_id AT5G47920.1  
At5g47928	chr5:019405751	0.0	C/19405751-19405921	AT5G47928.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G47928.1p  transcript_id AT5G47928.1  protein_id AT5G47928.1p  transcript_id AT5G47928.1  
At5g47930	chr5:019407327	0.0	C/19407327-19407329,19407135-19407236,19407009-19407037,19406423-19406543	AT5G47930.1  CDS  gene_syn K16F13.2, K16F13_2  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S27 (RPS27D)  note 40S ribosomal protein S27 (RPS27D); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein, zinc-binding (InterPro:IPR011332), Ribosomal protein S27e (InterPro:IPR000592); BEST Arabidopsis thaliana protein match is: ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27); structural constituent of ribosome (TAIR:AT3G61110.1); Has 707 Blast hits to 707 proteins in 276 species: Archae - 87; Bacteria - 0; Metazoa - 301; Fungi - 98; Plants - 99; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT5G47930.1p  transcript_id AT5G47930.1  protein_id AT5G47930.1p  transcript_id AT5G47930.1  
At5g47940	chr5:019411680	0.0	C/19411680-19411893,19411207-19411508,19409407-19411140	AT5G47940.1  CDS  gene_syn K16F13.3, K16F13_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 911 Blast hits to 635 proteins in 157 species: Archae - 4; Bacteria - 202; Metazoa - 290; Fungi - 142; Plants - 33; Viruses - 0; Other Eukaryotes - 240 (source: NCBI BLink).  protein_id AT5G47940.1p  transcript_id AT5G47940.1  protein_id AT5G47940.1p  transcript_id AT5G47940.1  
At5g47950	chr5:019417218	0.0	C/19417218-19418498	AT5G47950.1  CDS  gene_syn K16F13.6, K16F13_6  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT3G30280.1); Has 1171 Blast hits to 1169 proteins in 96 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 16; Plants - 1152; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G47950.1p  transcript_id AT5G47950.1  protein_id AT5G47950.1p  transcript_id AT5G47950.1  
At5g47960	chr5:019422247	0.0	C/19422247-19422473,19421533-19421977	AT5G47960.1  CDS  gene_syn ATRABA4C, K16F13.4, K16F13_4, SMALL MOLECULAR WEIGHT G-PROTEIN 1, SMG1  gene ATRABA4C  function Encodes a small molecular weight g-protein.  go_component endomembrane system|GO:0012505||IEA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product ATRABA4C; GTP binding  note ATRABA4C; FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RABA4D (RAB GTPASE HOMOLOG A4D); GTP binding (TAIR:AT3G12160.1); Has 22938 Blast hits to 22903 proteins in 635 species: Archae - 15; Bacteria - 93; Metazoa - 12701; Fungi - 2964; Plants - 2079; Viruses - 19; Other Eukaryotes - 5067 (source: NCBI BLink).  protein_id AT5G47960.1p  transcript_id AT5G47960.1  protein_id AT5G47960.1p  transcript_id AT5G47960.1  
At5g47970	chr5:019423420	0.0	W/19423420-19423457,19423558-19423684,19423793-19423920,19424015-19424187,19424319-19424436,19424559-19424640,19424732-19424793,19424889-19424961,19425059-19425142,19425224-19425304,19425388-19425585	AT5G47970.1  CDS  gene_syn K16F13.5, K16F13_5  go_process tRNA processing|GO:0008033||IEA  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function tRNA dihydrouridine synthase activity|GO:0017150||IEA  go_function FAD binding|GO:0050660||IEA  go_component nucleus|GO:0005634|15469496|IDA  go_component cytoplasm|GO:0005737|15469496|IDA  go_component phragmoplast|GO:0009524|15469496|IDA  go_process regulation of nitrogen utilization|GO:0006808||ISS  product nitrogen regulation family protein  note nitrogen regulation family protein; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity; INVOLVED IN: regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process; LOCATED IN: nucleus, phragmoplast, cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269), tRNA-dihydrouridine synthase, conserved site (InterPro:IPR018517); BEST Arabidopsis thaliana protein match is: FAD binding / catalytic/ tRNA dihydrouridine synthase (TAIR:AT3G63510.1); Has 7166 Blast hits to 7164 proteins in 1353 species: Archae - 16; Bacteria - 3970; Metazoa - 102; Fungi - 62; Plants - 54; Viruses - 0; Other Eukaryotes - 2962 (source: NCBI BLink).  protein_id AT5G47970.1p  transcript_id AT5G47970.1  protein_id AT5G47970.1p  transcript_id AT5G47970.1  
At5g47970	chr5:019423420	0.0	W/19423420-19423457,19423558-19423684,19423793-19423920,19424015-19424187,19424319-19424436,19424559-19424640,19424732-19424793,19424889-19424961,19425059-19425142,19425224-19425304,19425388-19425585	AT5G47970.2  CDS  gene_syn K16F13.5, K16F13_5  go_process tRNA processing|GO:0008033||IEA  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function tRNA dihydrouridine synthase activity|GO:0017150||IEA  go_function FAD binding|GO:0050660||IEA  go_component nucleus|GO:0005634|15469496|IDA  go_component cytoplasm|GO:0005737|15469496|IDA  go_component phragmoplast|GO:0009524|15469496|IDA  go_process regulation of nitrogen utilization|GO:0006808||ISS  product nitrogen regulation family protein  note nitrogen regulation family protein; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity; INVOLVED IN: regulation of nitrogen utilization, oxidation reduction, tRNA processing, metabolic process; LOCATED IN: nucleus, phragmoplast, cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269), tRNA-dihydrouridine synthase, conserved site (InterPro:IPR018517); BEST Arabidopsis thaliana protein match is: FAD binding / catalytic/ tRNA dihydrouridine synthase (TAIR:AT3G63510.1); Has 7166 Blast hits to 7164 proteins in 1353 species: Archae - 16; Bacteria - 3970; Metazoa - 102; Fungi - 62; Plants - 54; Viruses - 0; Other Eukaryotes - 2962 (source: NCBI BLink).  protein_id AT5G47970.2p  transcript_id AT5G47970.2  protein_id AT5G47970.2p  transcript_id AT5G47970.2  
At5g47980	chr5:019428970	0.0	W/19428970-19430301	AT5G47980.1  CDS  gene_syn MDN11.1  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_function acyltransferase activity|GO:0008415||ISS  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity, acyltransferase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT4G15400.1); Has 1157 Blast hits to 1154 proteins in 101 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 22; Plants - 1134; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G47980.1p  transcript_id AT5G47980.1  protein_id AT5G47980.1p  transcript_id AT5G47980.1  
At5g47990	chr5:019434827	0.0	W/19434827-19435747,19435830-19436444	AT5G47990.1  CDS  gene_syn CYP705A5, CYTOCHROME P450, FAMILY 705, SUBFAMILY A, POLYPEPTIDE 5, MDN11.4, MDN11_4, THAD, THAD1, THALIAN-DIOL DESATURASE  gene CYP705A5  function encodes a member of the CYP705A family of cytochrome P450 enzymes. It appears to catalyze the addition of a double bond to thalian-diol at carbon 15. Reduced levels of THAD expression lead to a build up of thalian-diol in root extracts. thad1-1 mutants also have longer roots than wild type seedlings.  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process root development|GO:0048364|18356490|IMP  go_process thalianol metabolic process|GO:0080003|18356490|IMP  go_function oxygen binding|GO:0019825||ISS  go_function thalian-diol desaturase activity|GO:0080004|18356490|IMP  product CYP705A5; oxygen binding / thalian-diol desaturase  note CYP705A5; FUNCTIONS IN: oxygen binding, thalian-diol desaturase activity; INVOLVED IN: thalianol metabolic process, root development; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: hypocotyl, root, callus; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP705A2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G15350.1); Has 23827 Blast hits to 23707 proteins in 1252 species: Archae - 23; Bacteria - 2048; Metazoa - 10358; Fungi - 4717; Plants - 5705; Viruses - 6; Other Eukaryotes - 970 (source: NCBI BLink).  protein_id AT5G47990.1p  transcript_id AT5G47990.1  protein_id AT5G47990.1p  transcript_id AT5G47990.1  
At5g48000	chr5:019446762	0.0	C/19446762-19446970,19446357-19446681,19446110-19446262,19445770-19446018,19445568-19445660,19444851-19444929,19444606-19444712,19444313-19444531	AT5G48000.2  CDS  gene_syn CYP708 A2, CYP708A2, CYTOCHROME P450, FAMILY 708, SUBFAMILY A, POLYPEPTIDE 2, MDN11.7, MDN11_7, THAH, THAH1, THALIANOL HYDROXYLASE, THALIANOL HYDROXYLASE 1  gene CYP708A2  function Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation.  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process root development|GO:0048364|18356490|IMP  go_process thalianol metabolic process|GO:0080003|18356490|IMP  go_function oxygen binding|GO:0019825||ISS  go_function thalianol hydroxylase activity|GO:0080014|18356490|IMP  product CYP708A2; oxygen binding / thalianol hydroxylase  note CYP708A2; FUNCTIONS IN: thalianol hydroxylase activity, oxygen binding; INVOLVED IN: thalianol metabolic process, root development; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: hypocotyl, root, callus; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group IV (InterPro:IPR002403), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP708A3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G78490.1); Has 20564 Blast hits to 20517 proteins in 1159 species: Archae - 21; Bacteria - 2855; Metazoa - 9140; Fungi - 3210; Plants - 4328; Viruses - 6; Other Eukaryotes - 1004 (source: NCBI BLink).  protein_id AT5G48000.2p  transcript_id AT5G48000.2  protein_id AT5G48000.2p  transcript_id AT5G48000.2  
At5g48000	chr5:019446762	0.0	C/19446762-19446970,19446357-19446681,19446110-19446262,19445770-19446018,19445568-19445660,19444851-19444929,19444606-19444712,19444313-19444531	AT5G48000.3  CDS  gene_syn CYP708 A2, CYP708A2, CYTOCHROME P450, FAMILY 708, SUBFAMILY A, POLYPEPTIDE 2, MDN11.7, MDN11_7, THAH, THAH1, THALIANOL HYDROXYLASE, THALIANOL HYDROXYLASE 1  gene CYP708A2  function Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation.  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process root development|GO:0048364|18356490|IMP  go_process thalianol metabolic process|GO:0080003|18356490|IMP  go_function oxygen binding|GO:0019825||ISS  go_function thalianol hydroxylase activity|GO:0080014|18356490|IMP  product CYP708A2; oxygen binding / thalianol hydroxylase  note CYP708A2; FUNCTIONS IN: thalianol hydroxylase activity, oxygen binding; INVOLVED IN: thalianol metabolic process, root development; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: hypocotyl, root, callus; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group IV (InterPro:IPR002403), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP708A3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G78490.1); Has 20564 Blast hits to 20517 proteins in 1159 species: Archae - 21; Bacteria - 2855; Metazoa - 9140; Fungi - 3210; Plants - 4328; Viruses - 6; Other Eukaryotes - 1004 (source: NCBI BLink).  protein_id AT5G48000.3p  transcript_id AT5G48000.3  protein_id AT5G48000.3p  transcript_id AT5G48000.3  
At5g48000	chr5:019446762	0.0	C/19446762-19446970,19446357-19446681,19446110-19446262,19445770-19446018,19445568-19445660,19444851-19444929,19444606-19444712,19444313-19444531	AT5G48000.4  CDS  gene_syn CYP708 A2, CYP708A2, CYTOCHROME P450, FAMILY 708, SUBFAMILY A, POLYPEPTIDE 2, MDN11.7, MDN11_7, THAH, THAH1, THALIANOL HYDROXYLASE, THALIANOL HYDROXYLASE 1  gene CYP708A2  function Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation.  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process root development|GO:0048364|18356490|IMP  go_process thalianol metabolic process|GO:0080003|18356490|IMP  go_function oxygen binding|GO:0019825||ISS  go_function thalianol hydroxylase activity|GO:0080014|18356490|IMP  product CYP708A2; oxygen binding / thalianol hydroxylase  note CYP708A2; FUNCTIONS IN: thalianol hydroxylase activity, oxygen binding; INVOLVED IN: thalianol metabolic process, root development; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: hypocotyl, root, callus; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group IV (InterPro:IPR002403), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP708A3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G78490.1); Has 20564 Blast hits to 20517 proteins in 1159 species: Archae - 21; Bacteria - 2855; Metazoa - 9140; Fungi - 3210; Plants - 4328; Viruses - 6; Other Eukaryotes - 1004 (source: NCBI BLink).  protein_id AT5G48000.4p  transcript_id AT5G48000.4  protein_id AT5G48000.4p  transcript_id AT5G48000.4  
At5g48000	chr5:019446762	0.0	C/19446762-19446970,19446357-19446681,19446110-19446262,19445770-19446018,19445568-19445660,19444851-19444929,19444606-19444712,19444313-19444531	AT5G48000.5  CDS  gene_syn CYP708 A2, CYP708A2, CYTOCHROME P450, FAMILY 708, SUBFAMILY A, POLYPEPTIDE 2, MDN11.7, MDN11_7, THAH, THAH1, THALIANOL HYDROXYLASE, THALIANOL HYDROXYLASE 1  gene CYP708A2  function Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation.  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process root development|GO:0048364|18356490|IMP  go_process thalianol metabolic process|GO:0080003|18356490|IMP  go_function oxygen binding|GO:0019825||ISS  go_function thalianol hydroxylase activity|GO:0080014|18356490|IMP  product CYP708A2; oxygen binding / thalianol hydroxylase  note CYP708A2; FUNCTIONS IN: thalianol hydroxylase activity, oxygen binding; INVOLVED IN: thalianol metabolic process, root development; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group IV (InterPro:IPR002403), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP708A3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G78490.1); Has 20564 Blast hits to 20517 proteins in 1159 species: Archae - 21; Bacteria - 2855; Metazoa - 9140; Fungi - 3210; Plants - 4328; Viruses - 6; Other Eukaryotes - 1004 (source: NCBI BLink).  protein_id AT5G48000.5p  transcript_id AT5G48000.5  protein_id AT5G48000.5p  transcript_id AT5G48000.5  
At5g48000	chr5:019446762	0.0	C/19446762-19446970,19446357-19446681,19446110-19446262,19445770-19446018,19445568-19445660,19444851-19444929,19444606-19444712,19444313-19444531	AT5G48000.6  CDS  gene_syn CYP708 A2, CYP708A2, CYTOCHROME P450, FAMILY 708, SUBFAMILY A, POLYPEPTIDE 2, MDN11.7, MDN11_7, THAH, THAH1, THALIANOL HYDROXYLASE, THALIANOL HYDROXYLASE 1  gene CYP708A2  function Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation.  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process root development|GO:0048364|18356490|IMP  go_process thalianol metabolic process|GO:0080003|18356490|IMP  go_function oxygen binding|GO:0019825||ISS  go_function thalianol hydroxylase activity|GO:0080014|18356490|IMP  product CYP708A2; oxygen binding / thalianol hydroxylase  note CYP708A2; FUNCTIONS IN: thalianol hydroxylase activity, oxygen binding; INVOLVED IN: thalianol metabolic process, root development; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group IV (InterPro:IPR002403), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP708A3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G78490.1); Has 20564 Blast hits to 20517 proteins in 1159 species: Archae - 21; Bacteria - 2855; Metazoa - 9140; Fungi - 3210; Plants - 4328; Viruses - 6; Other Eukaryotes - 1004 (source: NCBI BLink).  protein_id AT5G48000.6p  transcript_id AT5G48000.6  protein_id AT5G48000.6p  transcript_id AT5G48000.6  
At5g48000	chr5:019447706	0.0	C/19447706-19447790,19446762-19447008,19446357-19446681,19446110-19446262,19445770-19446018,19445568-19445660,19444851-19444929,19444606-19444712,19444313-19444531	AT5G48000.1  CDS  gene_syn CYP708 A2, CYP708A2, CYTOCHROME P450, FAMILY 708, SUBFAMILY A, POLYPEPTIDE 2, MDN11.7, MDN11_7, THAH, THAH1, THALIANOL HYDROXYLASE, THALIANOL HYDROXYLASE 1  gene CYP708A2  function Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation.  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process root development|GO:0048364|18356490|IMP  go_process thalianol metabolic process|GO:0080003|18356490|IMP  go_function oxygen binding|GO:0019825||ISS  go_function thalianol hydroxylase activity|GO:0080014|18356490|IMP  product CYP708A2; oxygen binding / thalianol hydroxylase  note CYP708A2; FUNCTIONS IN: thalianol hydroxylase activity, oxygen binding; INVOLVED IN: thalianol metabolic process, root development; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: hypocotyl, root, callus; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group IV (InterPro:IPR002403), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP708A3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G78490.1); Has 20562 Blast hits to 20515 proteins in 1159 species: Archae - 21; Bacteria - 2855; Metazoa - 9140; Fungi - 3211; Plants - 4325; Viruses - 6; Other Eukaryotes - 1004 (source: NCBI BLink).  protein_id AT5G48000.1p  transcript_id AT5G48000.1  protein_id AT5G48000.1p  transcript_id AT5G48000.1  
At5g48010	chr5:019457001	0.0	W/19457001-19457204,19457298-19457483,19457622-19457711,19457793-19457993,19458112-19458196,19458315-19458481,19459028-19459219,19459312-19459425,19459531-19459785,19459874-19459972,19460378-19460434,19460512-19460558,19460650-19461136,19461422-19461538	AT5G48010.2  CDS  gene_syn MDN11.9, MDN11_9, THALIANOL SYNTHASE, THALIANOL SYNTHASE 1, THAS, THAS1  gene THAS1  function Encodes an oxidosqualene cyclase involved in the biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism.  go_component cellular_component|GO:0005575||ND  go_process tricyclic triterpenoid biosynthetic process|GO:0010263|15125655|IDA  go_process pentacyclic triterpenoid biosynthetic process|GO:0019745||ISS  go_process root development|GO:0048364|18356490|IMP  go_process thalianol metabolic process|GO:0080003|18356490|IMP  go_function catalytic activity|GO:0003824||ISS  go_function thalianol synthase activity|GO:0051746|15125655|IDA  product THAS1 (THALIANOL SYNTHASE 1); catalytic/ thalianol synthase  note THALIANOL SYNTHASE 1 (THAS1); FUNCTIONS IN: thalianol synthase activity, catalytic activity; INVOLVED IN: pentacyclic triterpenoid biosynthetic process, thalianol metabolic process, root development, tricyclic triterpenoid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Terpene synthase, conserved site (InterPro:IPR002365), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Squalene cyclase (InterPro:IPR018333), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: BARS1 (BARUOL SYNTHASE 1); baruol synthase/ catalytic (TAIR:AT4G15370.1); Has 1284 Blast hits to 1250 proteins in 360 species: Archae - 2; Bacteria - 520; Metazoa - 70; Fungi - 161; Plants - 339; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).  protein_id AT5G48010.2p  transcript_id AT5G48010.2  protein_id AT5G48010.2p  transcript_id AT5G48010.2  
At5g48010	chr5:019457001	0.0	W/19457001-19457204,19457298-19457483,19457622-19457711,19457793-19457993,19458112-19458196,19458315-19458481,19459028-19459219,19459312-19459425,19459531-19459785,19459874-19459972,19460378-19460434,19460627-19461136,19461422-19461538	AT5G48010.1  CDS  gene_syn MDN11.9, MDN11_9, THALIANOL SYNTHASE, THALIANOL SYNTHASE 1, THAS, THAS1  gene THAS1  function Encodes an oxidosqualene cyclase involved in the biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism.  go_component cellular_component|GO:0005575||ND  go_process tricyclic triterpenoid biosynthetic process|GO:0010263|15125655|IDA  go_process pentacyclic triterpenoid biosynthetic process|GO:0019745||ISS  go_process root development|GO:0048364|18356490|IMP  go_process thalianol metabolic process|GO:0080003|18356490|IMP  go_function catalytic activity|GO:0003824||ISS  go_function thalianol synthase activity|GO:0051746|15125655|IDA  product THAS1 (THALIANOL SYNTHASE 1); catalytic/ thalianol synthase  note THALIANOL SYNTHASE 1 (THAS1); FUNCTIONS IN: thalianol synthase activity, catalytic activity; INVOLVED IN: pentacyclic triterpenoid biosynthetic process, thalianol metabolic process, root development, tricyclic triterpenoid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Terpene synthase, conserved site (InterPro:IPR002365), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Squalene cyclase (InterPro:IPR018333), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: BARS1 (BARUOL SYNTHASE 1); baruol synthase/ catalytic (TAIR:AT4G15370.1); Has 1288 Blast hits to 1253 proteins in 361 species: Archae - 2; Bacteria - 523; Metazoa - 70; Fungi - 161; Plants - 340; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).  protein_id AT5G48010.1p  transcript_id AT5G48010.1  protein_id AT5G48010.1p  transcript_id AT5G48010.1  
At5g48020	chr5:019464548	0.0	C/19464548-19464790,19464009-19464182,19463825-19463917,19463670-19463738,19463370-19463576,19463132-19463257,19462888-19463043	AT5G48020.1  CDS  gene_syn MDN11.10, MDN11_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 401 Blast hits to 401 proteins in 128 species: Archae - 0; Bacteria - 152; Metazoa - 8; Fungi - 34; Plants - 61; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).  protein_id AT5G48020.1p  transcript_id AT5G48020.1  protein_id AT5G48020.1p  transcript_id AT5G48020.1  
At5g48030	chr5:019469667	0.0	C/19469667-19469753,19469496-19469589,19469324-19469398,19469150-19469241,19468983-19469066,19468852-19468890,19468626-19468745,19468399-19468443,19468222-19468309,19468057-19468121,19467882-19467956,19467687-19467759,19467506-19467597,19467347-19467418,19467135-19467191,19466772-19466820,19466498-19466564,19466298-19466394	AT5G48030.1  CDS  gene_syn GAMETOPHYTIC FACTOR 2, GFA2, MDN11.11, MDN11_11  gene GFA2  function encodes a mitochondrially targeted DNAJ protein involved in female gametophyte development.  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component mitochondrion|GO:0005739|12215516|IDA  go_process nuclear membrane fusion|GO:0000740|12215516|IMP  go_process protein folding|GO:0006457||ISS  go_process embryo sac development|GO:0009553|9758709|IMP  go_process cellularization of the embryo sac|GO:0009558|9758709|IMP  go_process polar nucleus fusion|GO:0010197|9758709|IMP  go_process synergid death|GO:0010198|12215516|IMP  go_process chaperone mediated protein folding requiring cofactor|GO:0051085|12215516|IGI  product GFA2 (GAMETOPHYTIC FACTOR 2); heat shock protein binding / unfolded protein binding  note GAMETOPHYTIC FACTOR 2 (GFA2); FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: in 7 processes; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), Heat shock protein DnaJ, cysteine-rich region (InterPro:IPR001305), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: ATJ1; heat shock protein binding / nucleic acid binding / unfolded protein binding / zinc ion binding (TAIR:AT1G28210.2); Has 20299 Blast hits to 19831 proteins in 2094 species: Archae - 116; Bacteria - 6081; Metazoa - 3785; Fungi - 1474; Plants - 1344; Viruses - 13; Other Eukaryotes - 7486 (source: NCBI BLink).  protein_id AT5G48030.1p  transcript_id AT5G48030.1  protein_id AT5G48030.1p  transcript_id AT5G48030.1  
At5g48040	chr5:019470461	0.0	W/19470461-19471729	AT5G48040.1  CDS  gene_syn MDN11.12, MDN11_12  go_component intracellular|GO:0005622||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  product ubiquitin thiolesterase  note ubiquitin thiolesterase; FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (InterPro:IPR001578); BEST Arabidopsis thaliana protein match is: ubiquitin thiolesterase (TAIR:AT3G58520.1); Has 214 Blast hits to 214 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 214; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G48040.1p  transcript_id AT5G48040.1  protein_id AT5G48040.1p  transcript_id AT5G48040.1  
At5g48050	chr5:019472661	0.0	C/19472661-19473770	AT5G48050.1  CDS  gene_syn MDN11.13, MDN11_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 624 Blast hits to 622 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 61; Plants - 537; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT5G48050.1p  transcript_id AT5G48050.1  protein_id AT5G48050.1p  transcript_id AT5G48050.1  
At5g48060	chr5:019475296	0.0	W/19475296-19477443,19477916-19478878	AT5G48060.1  CDS  gene_syn MDN11.14, MDN11_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal, plant (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT3G57880.1); Has 4827 Blast hits to 3070 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 3556; Fungi - 87; Plants - 890; Viruses - 0; Other Eukaryotes - 294 (source: NCBI BLink).  protein_id AT5G48060.1p  transcript_id AT5G48060.1  protein_id AT5G48060.1p  transcript_id AT5G48060.1  
At5g48070	chr5:019482158	0.0	W/19482158-19482439,19482541-19482734,19482859-19483231	AT5G48070.1  CDS  gene_syn ATXTH20, MDN11.15, MDN11_15, XTH20, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20  gene XTH20  function putative xyloglucan endotransglycosylase/hydrolase, expressed primarily in the stele of mature non-elongating regions of both the main and the lateral root. Is expressed in lateral root primordia but expression ceases after lateral root begins to grow.  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process cellular glucan metabolic process|GO:0006073||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762||IEA  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product XTH20 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20); hydrolase, acting on glycosyl bonds / hydrolase, hydrolyzing O-glycosyl compounds / xyloglucan:xyloglucosyl transferase  note XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20 (XTH20); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16, active site (InterPro:IPR008263), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: XTH17 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17); hydrolase, acting on glycosyl bonds / hydrolase, hydrolyzing O-glycosyl compounds / xyloglucan:xyloglucosyl transferase (TAIR:AT1G65310.1); Has 1413 Blast hits to 1405 proteins in 219 species: Archae - 0; Bacteria - 198; Metazoa - 0; Fungi - 312; Plants - 807; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT5G48070.1p  transcript_id AT5G48070.1  protein_id AT5G48070.1p  transcript_id AT5G48070.1  
At5g48090	chr5:019484724	0.0	W/19484724-19484756,19485052-19485102,19485195-19485364,19485462-19485561,19485646-19485744,19485843-19486089,19486178-19486270,19486349-19486601,19486687-19486834,19486929-19487027,19487154-19487240,19487353-19487394,19487474-19487584,19487651-19487722,19487808-19487926,19487991-19488051,19488135-19488383	AT5G48090.1  CDS  gene_syn EDM2-LIKE PROTEIN1, ELP1, MDN11.17, MDN11_17  gene ELP1  go_component cellular_component|GO:0005575||ND  product ELP1 (EDM2-LIKE PROTEIN1)  note EDM2-LIKE PROTEIN1 (ELP1); LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: EDM2; transcription factor (TAIR:AT5G55390.1); Has 239 Blast hits to 231 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 136; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT5G48090.1p  transcript_id AT5G48090.1  protein_id AT5G48090.1p  transcript_id AT5G48090.1  
At5g48090	chr5:019485234	0.0	W/19485234-19485364,19485462-19485561,19485646-19485744,19485843-19486089,19486178-19486270,19486349-19486601,19486687-19486834,19486929-19487027,19487154-19487240,19487353-19487394,19487474-19487584,19487651-19487722,19487808-19487926,19487991-19488051,19488135-19488383	AT5G48090.2  CDS  gene_syn EDM2-LIKE PROTEIN1, ELP1, MDN11.17, MDN11_17  gene ELP1  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product ELP1 (EDM2-LIKE PROTEIN1); protein binding / zinc ion binding  note EDM2-LIKE PROTEIN1 (ELP1); FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965); BEST Arabidopsis thaliana protein match is: EDM2; transcription factor (TAIR:AT5G55390.1).  protein_id AT5G48090.2p  transcript_id AT5G48090.2  protein_id AT5G48090.2p  transcript_id AT5G48090.2  
At5g48100	chr5:019492502	0.0	C/19492502-19492582,19492266-19492417,19491924-19492168,19491692-19491820,19490249-19491202,19489530-19489666	AT5G48100.1  CDS  gene_syn LAC15, LACCASE-LIKE 15, MDN11.18, MDN11_18, TRANSPARENT TESTA 10, TT10  gene TT10  function Encodes a protein that is similar to laccase-like polyphenol oxidases. Involved in lignin and flavonoids biosynthesis. It has four conserved copper binding domains. Expressed in developing testa, where it colocalizes with the flavonoid end products proanthocyanidins and flavonols. Mutant plants exhibited a delay in developmentally determined browning of the testa, characterized by the pale brown color of seed coat. The tt10 mutant seeds accumulate more epicatechin monomers and more soluble proanthocyanidins than wild-type seeds. Flavonol composition was also affected in tt10 seeds, which exhibited a higher ratio of quercetin rhamnoside monomers versus dimers than wild-type seeds.  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process lignin biosynthetic process|GO:0009809|16779554|IMP  go_process flavonoid biosynthetic process|GO:0009813|8528278|IMP  go_function copper ion binding|GO:0005507|16243908|ISS  go_function laccase activity|GO:0008471|15940465|ISS  go_function laccase activity|GO:0008471|16243908|ISS  go_function laccase activity|GO:0008471|16779554|IMP  product TT10 (TRANSPARENT TESTA 10); copper ion binding / laccase  note TRANSPARENT TESTA 10 (TT10); FUNCTIONS IN: copper ion binding, laccase activity; INVOLVED IN: lignin biosynthetic process, flavonoid biosynthetic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: LAC14 (laccase 14); laccase (TAIR:AT5G09360.1); Has 6952 Blast hits to 5795 proteins in 958 species: Archae - 14; Bacteria - 2574; Metazoa - 495; Fungi - 2647; Plants - 881; Viruses - 0; Other Eukaryotes - 341 (source: NCBI BLink).  protein_id AT5G48100.1p  transcript_id AT5G48100.1  protein_id AT5G48100.1p  transcript_id AT5G48100.1  
At5g48110	chr5:019504112	0.0	C/19504112-19504357,19503754-19504018,19503593-19503651,19503275-19503540,19502869-19503090,19502279-19502414,19501529-19501774,19501157-19501444	AT5G48110.1  CDS  gene_syn MDN11.20, MDN11_20  go_component chloroplast|GO:0009507||IEA  go_process metabolic process|GO:0008152||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function lyase activity|GO:0016829||IEA  product terpene synthase/cyclase family protein  note terpene synthase/cyclase family protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: flower, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase/cyclase family protein (TAIR:AT1G70080.1); Has 1038 Blast hits to 1031 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 1029; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G48110.1p  transcript_id AT5G48110.1  protein_id AT5G48110.1p  transcript_id AT5G48110.1  
At5g48120	chr5:019514700	0.0	C/19514700-19514774,19514566-19514628,19514420-19514474,19514244-19514341,19513988-19514146,19513829-19513888,19513447-19513635,19513295-19513348,19512752-19512838,19511946-19512651,19511418-19511797,19511216-19511289,19510546-19510651,19509608-19510446,19509155-19509230,19508972-19509083,19508675-19508751,19508494-19508574,19508336-19508415,19508210-19508243	AT5G48120.1  CDS  gene_syn MDN11.21, MDN11_21  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  product binding  note binding; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 440 Blast hits to 255 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 238; Fungi - 145; Plants - 18; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT5G48120.1p  transcript_id AT5G48120.1  protein_id AT5G48120.1p  transcript_id AT5G48120.1  
At5g48130	chr5:019516291	0.0	W/19516291-19516388,19516487-19516556,19516669-19517754,19517827-19518450	AT5G48130.1  CDS  gene_syn MIF21.2, MIF21_2  go_component chloroplast|GO:0009507||IEA  go_process response to light stimulus|GO:0009416||IEA  go_function signal transducer activity|GO:0004871||IEA  go_function protein binding|GO:0005515||IEA  go_process response to light stimulus|GO:0009416||ISS  go_function signal transducer activity|GO:0004871||ISS  product phototropic-responsive NPH3 family protein  note phototropic-responsive NPH3 family protein; FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: protein binding / signal transducer (TAIR:AT5G67385.1); Has 453 Blast hits to 398 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 453; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G48130.1p  transcript_id AT5G48130.1  protein_id AT5G48130.1p  transcript_id AT5G48130.1  
At5g48140	chr5:019520299	0.0	C/19520299-19520412,19519909-19520211,19519310-19519828,19518907-19519158	AT5G48140.1  CDS  gene_syn MIF21.3, MIF21_3  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product polygalacturonase, putative / pectinase, putative  note polygalacturonase, putative / pectinase, putative; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: polygalacturonase 3 (PGA3) / pectinase (TAIR:AT3G07820.1); Has 2214 Blast hits to 2207 proteins in 272 species: Archae - 2; Bacteria - 305; Metazoa - 8; Fungi - 981; Plants - 858; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT5G48140.1p  transcript_id AT5G48140.1  protein_id AT5G48140.1p  transcript_id AT5G48140.1  
At5g48150	chr5:019523032	0.0	C/19523032-19524053,19522497-19522947	AT5G48150.1  CDS  gene_syn MIF21.4, MIF21_4, PAT1, phytochrome a signal transduction 1  gene PAT1  function Member of GRAS gene family. Semi-dominant mutant has a reduced response to far-red light and appears to act early in the phytochrome A signaling pathway.  go_component cytoplasm|GO:0005737|10817761|IDA  go_process photomorphogenesis|GO:0009640|10817761|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function signal transducer activity|GO:0004871|10817761|IMP  product PAT1 (phytochrome a signal transduction 1); signal transducer/ transcription factor  note phytochrome a signal transduction 1 (PAT1); FUNCTIONS IN: transcription factor activity, signal transducer activity; INVOLVED IN: photomorphogenesis; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: SCL21 (SCARECROW-LIKE 21); transcription factor (TAIR:AT2G04890.1); Has 1386 Blast hits to 1359 proteins in 190 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 1382; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G48150.1p  transcript_id AT5G48150.1  protein_id AT5G48150.1p  transcript_id AT5G48150.1  
At5g48150	chr5:019523032	0.0	C/19523032-19524053,19522497-19522947	AT5G48150.2  CDS  gene_syn MIF21.4, MIF21_4, PAT1, phytochrome a signal transduction 1  gene PAT1  function Member of GRAS gene family. Semi-dominant mutant has a reduced response to far-red light and appears to act early in the phytochrome A signaling pathway.  go_component cytoplasm|GO:0005737|10817761|IDA  go_process photomorphogenesis|GO:0009640|10817761|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function signal transducer activity|GO:0004871|10817761|IMP  product PAT1 (phytochrome a signal transduction 1); signal transducer/ transcription factor  note phytochrome a signal transduction 1 (PAT1); FUNCTIONS IN: transcription factor activity, signal transducer activity; INVOLVED IN: photomorphogenesis; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: SCL21 (SCARECROW-LIKE 21); transcription factor (TAIR:AT2G04890.1); Has 1386 Blast hits to 1359 proteins in 190 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 1382; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G48150.2p  transcript_id AT5G48150.2  protein_id AT5G48150.2p  transcript_id AT5G48150.2  
At5g48160	chr5:019528725	0.0	C/19528725-19529820,19528019-19528647	AT5G48160.1  CDS  gene_syn MIF21.5, MIF21_5, OBE2, OBERON2  gene OBE2  function Encodes a nuclear PHD finger protein that is functionally redundant with OBE1 and plays an important role in the maintenance and/or establishment of the root and shoot apical meristems.  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634|18403411|IDA  go_process embryonic development ending in seed dormancy|GO:0009793|18403411|IGI  go_process root meristem specification|GO:0010071|18403411|IGI  go_process maintenance of root meristem identity|GO:0010078|18403411|IGI  go_process regulation of gene expression|GO:0010468|19392692|IGI  go_process maintenance of shoot apical meristem identity|GO:0010492|18403411|IGI  go_process primary root development|GO:0080022|19392692|IGI  product OBE2 (OBERON2); protein binding / zinc ion binding  note OBERON2 (OBE2); FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: embryonic development ending in seed dormancy, root meristem specification, maintenance of root meristem identity, maintenance of shoot apical meristem identity; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: seedling growth, C globular stage, E expanded cotyledon stage, D bilateral stage, B proembryo stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082), Zinc finger, PHD-type (InterPro:IPR001965); BEST Arabidopsis thaliana protein match is: OBE1 (OBERON1); protein binding / zinc ion binding (TAIR:AT3G07780.1); Has 2155 Blast hits to 1706 proteins in 257 species: Archae - 13; Bacteria - 161; Metazoa - 713; Fungi - 186; Plants - 184; Viruses - 37; Other Eukaryotes - 861 (source: NCBI BLink).  protein_id AT5G48160.1p  transcript_id AT5G48160.1  protein_id AT5G48160.1p  transcript_id AT5G48160.1  
At5g48160	chr5:019528725	0.0	C/19528725-19529820,19528019-19528647	AT5G48160.2  CDS  gene_syn MIF21.5, MIF21_5, OBE2, OBERON2  gene OBE2  function Encodes a nuclear PHD finger protein that is functionally redundant with OBE1 and plays an important role in the maintenance and/or establishment of the root and shoot apical meristems.  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634|18403411|IDA  go_process embryonic development ending in seed dormancy|GO:0009793|18403411|IGI  go_process root meristem specification|GO:0010071|18403411|IGI  go_process maintenance of root meristem identity|GO:0010078|18403411|IGI  go_process regulation of gene expression|GO:0010468|19392692|IGI  go_process maintenance of shoot apical meristem identity|GO:0010492|18403411|IGI  go_process primary root development|GO:0080022|19392692|IGI  product OBE2 (OBERON2); protein binding / zinc ion binding  note OBERON2 (OBE2); FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: embryonic development ending in seed dormancy, root meristem specification, maintenance of root meristem identity, maintenance of shoot apical meristem identity; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: seedling growth, C globular stage, E expanded cotyledon stage, D bilateral stage, B proembryo stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082), Zinc finger, PHD-type (InterPro:IPR001965); BEST Arabidopsis thaliana protein match is: OBE1 (OBERON1); protein binding / zinc ion binding (TAIR:AT3G07780.1); Has 2155 Blast hits to 1706 proteins in 257 species: Archae - 13; Bacteria - 161; Metazoa - 713; Fungi - 186; Plants - 184; Viruses - 37; Other Eukaryotes - 861 (source: NCBI BLink).  protein_id AT5G48160.2p  transcript_id AT5G48160.2  protein_id AT5G48160.2p  transcript_id AT5G48160.2  
At5g48170	chr5:019532729	0.0	C/19532729-19533202	AT5G48170.1  CDS  gene_syn MIF21.6, MIF21_6, SLEEPY2, SLY2  gene SLY2  function encodes an F-box protein whose protein sequence is similar to SLY1, which belongs to SCF-SLY1 E3 ligase complex. SCF-SLY1 E3 ligase degrades DELLA proteins that are involved in promoting growth. Overexpression of SLY2 can partially compensate sly1-10 mutant phenotype of dwarfism.  go_component cellular_component|GO:0005575||ND  go_process regulation of gibberellic acid mediated signaling|GO:0009937|15161962|IMP  go_function molecular_function|GO:0003674||ND  product SLY2 (SLEEPY2)  note SLEEPY2 (SLY2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of gibberellic acid mediated signaling; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: SLY1 (SLEEPY1) (TAIR:AT4G24210.1); Has 49 Blast hits to 49 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 7; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G48170.1p  transcript_id AT5G48170.1  protein_id AT5G48170.1p  transcript_id AT5G48170.1  
At5g48175	chr5:019539208	0.0	W/19539208-19539318,19539440-19539676	AT5G48175.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, hypocotyl, root; Has 23 Blast hits to 23 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G48175.1p  transcript_id AT5G48175.1  protein_id AT5G48175.1p  transcript_id AT5G48175.1  
At5g48180	chr5:019542329	0.0	C/19542329-19542358,19541283-19542233	AT5G48180.1  CDS  gene_syn MIF21.7, MIF21_7, NITRILE SPECIFIER PROTEIN 5, NSP5  gene NSP5  function Encodes a nitrile-specifier protein NSP5. NSP5 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation.  go_component cellular_component|GO:0005575||ND  go_process glucosinolate catabolic process|GO:0019762|18987211|IDA  go_process nitrile biosynthetic process|GO:0080028|18987211|IDA  go_function molecular_function|GO:0003674||ND  product NSP5 (NITRILE SPECIFIER PROTEIN 5)  note NITRILE SPECIFIER PROTEIN 5 (NSP5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: glucosinolate catabolic process, nitrile biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing protein (TAIR:AT3G07720.1); Has 10532 Blast hits to 5258 proteins in 267 species: Archae - 9; Bacteria - 301; Metazoa - 7069; Fungi - 637; Plants - 990; Viruses - 29; Other Eukaryotes - 1497 (source: NCBI BLink).  protein_id AT5G48180.1p  transcript_id AT5G48180.1  protein_id AT5G48180.1p  transcript_id AT5G48180.1  
At5g48190	chr5:019543479	0.0	W/19543479-19543651,19544034-19544169	AT5G48190.1  CDS  gene_syn MIF21.8  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60990.1); Has 68 Blast hits to 67 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G48190.1p  transcript_id AT5G48190.1  protein_id AT5G48190.1p  transcript_id AT5G48190.1  
At5g48200	chr5:019545255	0.0	W/19545255-19545308,19545934-19546176,19546516-19546595,19546997-19547270	AT5G48200.1  CDS  gene_syn MIF21.9, MIF21_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G48200.1p  transcript_id AT5G48200.1  protein_id AT5G48200.1p  transcript_id AT5G48200.1  
At5g48205	chr5:019547689	0.0	C/19547689-19547787,19547533-19547561,19547338-19547457,19546937-19547264	AT5G48205.1  CDS  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type, AN1-like) family protein (TAIR:AT3G57480.1); Has 282 Blast hits to 282 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 180; Fungi - 46; Plants - 45; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT5G48205.1p  transcript_id AT5G48205.1  protein_id AT5G48205.1p  transcript_id AT5G48205.1  
At5g48210	chr5:019548459	0.0	W/19548459-19548770	AT5G48210.1  CDS  gene_syn MIF21.10, MIF21_10  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G42565.1); Has 65 Blast hits to 62 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G48210.1p  transcript_id AT5G48210.1  protein_id AT5G48210.1p  transcript_id AT5G48210.1  
At5g48220	chr5:019549930	0.0	W/19549930-19550055,19550376-19550789,19550877-19550951,19551034-19551078,19551192-19551356,19551456-19551534,19551612-19551694,19551794-19551862,19551963-19552046	AT5G48220.1  CDS  gene_syn MIF21.11, MIF21_11  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process tryptophan metabolic process|GO:0006568||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function indole-3-glycerol-phosphate synthase activity|GO:0004425||IEA  product indole-3-glycerol phosphate synthase, putative  note indole-3-glycerol phosphate synthase, putative; FUNCTIONS IN: indole-3-glycerol-phosphate synthase activity, catalytic activity; INVOLVED IN: metabolic process, tryptophan metabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Indole-3-glycerol phosphate synthase, central region (InterPro:IPR001468), Ribulose-phosphate binding barrel (InterPro:IPR011060), Indole-3-glycerol phosphate synthase (InterPro:IPR013798); BEST Arabidopsis thaliana protein match is: indole-3-glycerol phosphate synthase (IGPS) (TAIR:AT2G04400.1); Has 5818 Blast hits to 5818 proteins in 1238 species: Archae - 135; Bacteria - 3231; Metazoa - 0; Fungi - 114; Plants - 44; Viruses - 0; Other Eukaryotes - 2294 (source: NCBI BLink).  protein_id AT5G48220.1p  transcript_id AT5G48220.1  protein_id AT5G48220.1p  transcript_id AT5G48220.1  
At5g48220	chr5:019550439	0.0	W/19550439-19550789,19550877-19550951,19551034-19551078,19551192-19551356,19551456-19551534,19551612-19551694,19551794-19551862,19551963-19552046	AT5G48220.2  CDS  gene_syn MIF21.11, MIF21_11  go_component chloroplast|GO:0009507|18431481|IDA  go_process tryptophan metabolic process|GO:0006568||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function indole-3-glycerol-phosphate synthase activity|GO:0004425||IEA  product indole-3-glycerol phosphate synthase, putative  note indole-3-glycerol phosphate synthase, putative; FUNCTIONS IN: indole-3-glycerol-phosphate synthase activity, catalytic activity; INVOLVED IN: metabolic process, tryptophan metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060), Indole-3-glycerol phosphate synthase, central region (InterPro:IPR001468), Indole-3-glycerol phosphate synthase (InterPro:IPR013798); BEST Arabidopsis thaliana protein match is: indole-3-glycerol phosphate synthase (IGPS) (TAIR:AT2G04400.1); Has 5818 Blast hits to 5818 proteins in 1238 species: Archae - 135; Bacteria - 3231; Metazoa - 0; Fungi - 114; Plants - 44; Viruses - 0; Other Eukaryotes - 2294 (source: NCBI BLink).  protein_id AT5G48220.2p  transcript_id AT5G48220.2  protein_id AT5G48220.2p  transcript_id AT5G48220.2  
At5g48230	chr5:019554913	0.0	C/19554913-19555030,19554652-19554825,19554452-19554557,19554234-19554372,19553935-19554012,19553794-19553859,19553385-19553470,19553159-19553258,19552970-19553080,19552849-19552890,19552570-19552746	AT5G48230.1  CDS  gene_syn ACAT2, ACETOACETYL-COA THIOLASE 2, EMB1276, EMBRYO DEFECTIVE 1276, MIF21.12, MIF21_12  gene ACAT2  go_component peroxisome|GO:0005777|17951448|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function catalytic activity|GO:0003824||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function acetyl-CoA C-acetyltransferase activity|GO:0003985||ISS  product ACAT2 (ACETOACETYL-COA THIOLASE 2); acetyl-CoA C-acetyltransferase/ catalytic  note ACETOACETYL-COA THIOLASE 2 (ACAT2); FUNCTIONS IN: acetyl-CoA C-acetyltransferase activity, catalytic activity; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: peroxisome, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase (InterPro:IPR002155), Thiolase-like (InterPro:IPR016039), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative (TAIR:AT5G47720.5); Has 16471 Blast hits to 16446 proteins in 1352 species: Archae - 254; Bacteria - 8775; Metazoa - 832; Fungi - 434; Plants - 143; Viruses - 0; Other Eukaryotes - 6033 (source: NCBI BLink).  protein_id AT5G48230.1p  transcript_id AT5G48230.1  protein_id AT5G48230.1p  transcript_id AT5G48230.1  
At5g48230	chr5:019555089	0.0	C/19555089-19555122,19554913-19555011,19554652-19554825,19554452-19554557,19554234-19554372,19553935-19554012,19553794-19553859,19553385-19553470,19553159-19553258,19552970-19553080,19552849-19552890,19552570-19552746	AT5G48230.2  CDS  gene_syn ACAT2, ACETOACETYL-COA THIOLASE 2, EMB1276, EMBRYO DEFECTIVE 1276, MIF21.12, MIF21_12  gene ACAT2  go_component peroxisome|GO:0005777|17951448|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function catalytic activity|GO:0003824||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function acetyl-CoA C-acetyltransferase activity|GO:0003985||ISS  product ACAT2 (ACETOACETYL-COA THIOLASE 2); acetyl-CoA C-acetyltransferase/ catalytic  note ACETOACETYL-COA THIOLASE 2 (ACAT2); FUNCTIONS IN: acetyl-CoA C-acetyltransferase activity, catalytic activity; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: peroxisome, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase (InterPro:IPR002155), Thiolase-like (InterPro:IPR016039), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative (TAIR:AT5G47720.4); Has 16480 Blast hits to 16453 proteins in 1352 species: Archae - 256; Bacteria - 8775; Metazoa - 833; Fungi - 434; Plants - 143; Viruses - 0; Other Eukaryotes - 6039 (source: NCBI BLink).  protein_id AT5G48230.2p  transcript_id AT5G48230.2  protein_id AT5G48230.2p  transcript_id AT5G48230.2  
At5g48240	chr5:019559301	0.0	W/19559301-19559744,19559826-19559927,19560012-19560093,19560201-19560220,19560305-19560365,19560456-19560520,19560592-19560677,19560773-19560827,19560903-19560998,19561094-19561153	AT5G48240.3  CDS  gene_syn MIF21.13, MIF21_13  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1665 (InterPro:IPR012459).  protein_id AT5G48240.3p  transcript_id AT5G48240.3  protein_id AT5G48240.3p  transcript_id AT5G48240.3  
At5g48240	chr5:019559301	0.0	W/19559301-19559744,19559826-19559927,19560012-19560093,19560201-19560220,19560305-19560365,19560456-19560520,19560903-19560998,19561094-19561153	AT5G48240.1  CDS  gene_syn MIF21.13, MIF21_13  go_component nucleolus|GO:0005730|15496452|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1665 (InterPro:IPR012459); Has 324 Blast hits to 303 proteins in 115 species: Archae - 0; Bacteria - 4; Metazoa - 126; Fungi - 74; Plants - 34; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT5G48240.1p  transcript_id AT5G48240.1  protein_id AT5G48240.1p  transcript_id AT5G48240.1  
At5g48240	chr5:019559301	0.0	W/19559301-19559744,19559826-19559927,19560012-19560093,19560201-19560220,19560305-19560365,19560456-19560619	AT5G48240.2  CDS  gene_syn MIF21.13, MIF21_13  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1665 (InterPro:IPR012459); Has 158 Blast hits to 157 proteins in 84 species: Archae - 0; Bacteria - 2; Metazoa - 43; Fungi - 65; Plants - 21; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT5G48240.2p  transcript_id AT5G48240.2  protein_id AT5G48240.2p  transcript_id AT5G48240.2  
At5g48250	chr5:019562592	0.0	C/19562592-19563113,19562337-19562504,19561933-19562234,19561719-19561848	AT5G48250.1  CDS  gene_syn MIF21.14, MIF21_14  go_component plasma membrane|GO:0005886|17317660|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (B-box type) family protein  note zinc finger (B-box type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: COL9 (CONSTANS-LIKE 9); transcription factor/ zinc ion binding (TAIR:AT3G07650.4); Has 1853 Blast hits to 1316 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 1784; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT5G48250.1p  transcript_id AT5G48250.1  protein_id AT5G48250.1p  transcript_id AT5G48250.1  
At5g48270	chr5:019564744	0.0	C/19564744-19565712	AT5G48270.1  CDS  gene_syn MIF21.16, MIF21_16  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF868, plant (InterPro:IPR008586); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04220.1); Has 143 Blast hits to 142 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G48270.1p  transcript_id AT5G48270.1  protein_id AT5G48270.1p  transcript_id AT5G48270.1  
At5g48280	chr5:019567578	0.0	C/19567578-19567688,19567064-19567390	AT5G48280.1  CDS  gene_syn MIF21.17, MIF21_17  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G48280.1p  transcript_id AT5G48280.1  protein_id AT5G48280.1p  transcript_id AT5G48280.1  
At5g48290	chr5:019568980	0.0	W/19568980-19568985,19569059-19569137,19569198-19569658	AT5G48290.1  CDS  gene_syn K23F3.1, K23F3_1  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT3G07600.1); Has 255 Blast hits to 253 proteins in 25 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 4; Plants - 204; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT5G48290.1p  transcript_id AT5G48290.1  protein_id AT5G48290.1p  transcript_id AT5G48290.1  
At5g48290	chr5:019569083	0.0	W/19569083-19569137,19569198-19569658	AT5G48290.2  CDS  gene_syn K23F3.1, K23F3_1  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT3G07600.1); Has 205 Blast hits to 203 proteins in 21 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 4; Plants - 154; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT5G48290.2p  transcript_id AT5G48290.2  protein_id AT5G48290.2p  transcript_id AT5G48290.2  
At5g48300	chr5:019570326	0.0	W/19570326-19570589,19570689-19571255,19571335-19571514,19571674-19571777,19571851-19571962,19572042-19572140,19572228-19572347,19572441-19572557	AT5G48300.1  CDS  gene_syn ADG1, ADP GLUCOSE PYROPHOSPHORYLASE 1, ADP GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT, ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, APS1, K23F3.2, K23F3_2  gene ADG1  function Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. The presence of the small subunit is required for large subunit stability. Two isoforms of the small subunit (ApS1 and ApS2) have been described. ApS1 is the major small subunit isoform present in all plant tissues tested.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_component heterotetrameric ADPG pyrophosphorylase complex|GO:0030931|9680965|IMP  go_process starch biosynthetic process|GO:0019252|18614708|IMP  go_process starch biosynthetic process|GO:0019252|9680965|TAS  go_process photoperiodism, flowering|GO:0048573|18614708|IMP  go_function glucose-1-phosphate adenylyltransferase activity|GO:0008878|17452341|IDA  go_function glucose-1-phosphate adenylyltransferase activity|GO:0008878|18614708|IDA  go_function glucose-1-phosphate adenylyltransferase activity|GO:0008878|9680965|IMP  go_function glucose-1-phosphate adenylyltransferase activity|GO:0008878||ISS  product ADG1 (ADP GLUCOSE PYROPHOSPHORYLASE 1); glucose-1-phosphate adenylyltransferase  note ADP GLUCOSE PYROPHOSPHORYLASE 1 (ADG1); FUNCTIONS IN: glucose-1-phosphate adenylyltransferase activity; INVOLVED IN: photoperiodism, flowering, starch biosynthetic process; LOCATED IN: heterotetrameric ADPG pyrophosphorylase complex, apoplast, chloroplast, chloroplast stroma; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-1-phosphate adenylyltransferase (InterPro:IPR011831), ADP-glucose pyrophosphorylase, conserved site (InterPro:IPR005836), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: APL1 (ADP GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1); glucose-1-phosphate adenylyltransferase (TAIR:AT5G19220.1); Has 7981 Blast hits to 7979 proteins in 1281 species: Archae - 327; Bacteria - 4519; Metazoa - 60; Fungi - 18; Plants - 1602; Viruses - 0; Other Eukaryotes - 1455 (source: NCBI BLink).  protein_id AT5G48300.1p  transcript_id AT5G48300.1  protein_id AT5G48300.1p  transcript_id AT5G48300.1  
At5g48310	chr5:019579913	0.0	C/19579913-19580362,19579476-19579849,19579258-19579392,19579038-19579159,19578783-19578953,19578524-19578629,19578241-19578346,19578028-19578138,19577781-19577944,19577573-19577690,19577193-19577417,19576811-19577001,19576522-19576689,19576331-19576436,19576107-19576244,19575850-19576008,19575544-19575750,19575196-19575462,19574961-19575113	AT5G48310.1  CDS  gene_syn K23F3.3, K23F3_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24610.1); Has 51 Blast hits to 49 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G48310.1p  transcript_id AT5G48310.1  protein_id AT5G48310.1p  transcript_id AT5G48310.1  
At5g48320	chr5:019581794	0.0	C/19581794-19584727	AT5G48320.1  CDS  gene_syn K23F3.4, K23F3_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT4G15070.1); Has 1391 Blast hits to 639 proteins in 49 species: Archae - 0; Bacteria - 41; Metazoa - 15; Fungi - 7; Plants - 1227; Viruses - 1; Other Eukaryotes - 100 (source: NCBI BLink).  protein_id AT5G48320.1p  transcript_id AT5G48320.1  protein_id AT5G48320.1p  transcript_id AT5G48320.1  
At5g48330	chr5:019585989	0.0	W/19585989-19586353,19586556-19586775,19586856-19587177,19587269-19587729	AT5G48330.1  CDS  gene_syn K23F3.5, K23F3_5  go_process biological_process|GO:0008150||ND  go_function binding|GO:0005488||ISS  product regulator of chromosome condensation (RCC1) family protein  note regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: UVR8 (UVB-RESISTANCE 8); chromatin binding / guanyl-nucleotide exchange factor (TAIR:AT5G63860.1); Has 15456 Blast hits to 4421 proteins in 299 species: Archae - 76; Bacteria - 1677; Metazoa - 5981; Fungi - 696; Plants - 1366; Viruses - 2; Other Eukaryotes - 5658 (source: NCBI BLink).  protein_id AT5G48330.1p  transcript_id AT5G48330.1  protein_id AT5G48330.1p  transcript_id AT5G48330.1  
At5g48330	chr5:019585989	0.0	W/19585989-19586353,19586559-19586775,19586856-19587177,19587269-19587729	AT5G48330.2  CDS  gene_syn K23F3.5, K23F3_5  go_process biological_process|GO:0008150||ND  go_function binding|GO:0005488||ISS  product regulator of chromosome condensation (RCC1) family protein  note regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: UVR8 (UVB-RESISTANCE 8); chromatin binding / guanyl-nucleotide exchange factor (TAIR:AT5G63860.1); Has 15499 Blast hits to 4421 proteins in 301 species: Archae - 76; Bacteria - 1677; Metazoa - 6053; Fungi - 697; Plants - 1371; Viruses - 2; Other Eukaryotes - 5623 (source: NCBI BLink).  protein_id AT5G48330.2p  transcript_id AT5G48330.2  protein_id AT5G48330.2p  transcript_id AT5G48330.2  
At5g48335	chr5:019588083	0.0	W/19588083-19588159,19588228-19588259,19588609-19588740,19589127-19589177,19589314-19589366	AT5G48335.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G07580.1); Has 26 Blast hits to 26 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G48335.1p  transcript_id AT5G48335.1  protein_id AT5G48335.1p  transcript_id AT5G48335.1  
At5g48340	chr5:019590785	0.0	W/19590785-19591127,19591208-19592322,19592413-19592487	AT5G48340.1  CDS  gene_syn K23F3.6, K23F3_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; Has 33 Blast hits to 30 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 2; Plants - 18; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G48340.1p  transcript_id AT5G48340.1  protein_id AT5G48340.1p  transcript_id AT5G48340.1  
At5g48350	chr5:019593566	0.0	W/19593566-19594165	AT5G48350.1  CDS  gene_syn K23F3.7, K23F3_7  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: shoot apex, sperm cell, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT3G62320.1); Has 93 Blast hits to 93 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 4; Plants - 81; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G48350.1p  transcript_id AT5G48350.1  protein_id AT5G48350.1p  transcript_id AT5G48350.1  
At5g48360	chr5:019595716	0.0	W/19595716-19597043,19597133-19597299,19597385-19597623,19597717-19598331	AT5G48360.1  CDS  gene_syn K23F3.8, K23F3_8  go_process cellular component organization|GO:0016043||IEA  go_process actin cytoskeleton organization|GO:0030036||IEA  go_function actin binding|GO:0003779|12417149|ISS  go_function actin binding|GO:0003779|15256004|ISS  go_function actin binding|GO:0003779||ISS  product formin homology 2 domain-containing protein / FH2 domain-containing protein  note formin homology 2 domain-containing protein / FH2 domain-containing protein; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding FH2 and DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: AFH1 (FORMIN HOMOLOGY 1); actin binding / actin filament binding / protein binding (TAIR:AT3G25500.1); Has 2141 Blast hits to 1946 proteins in 183 species: Archae - 2; Bacteria - 30; Metazoa - 1112; Fungi - 104; Plants - 453; Viruses - 75; Other Eukaryotes - 365 (source: NCBI BLink).  protein_id AT5G48360.1p  transcript_id AT5G48360.1  protein_id AT5G48360.1p  transcript_id AT5G48360.1  
At5g48370	chr5:019600159	0.0	C/19600159-19600512,19599789-19599966,19599221-19599690,19599005-19599133,19598666-19598848	AT5G48370.2  CDS  gene_syn K23F3.9, K23F3_9  go_function acyl-CoA thioesterase activity|GO:0016291||ISS  go_function hydrolase activity, acting on ester bonds|GO:0016788||ISS  product thioesterase family protein  note thioesterase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: thioesterase family protein (TAIR:AT2G30720.1); Has 1576 Blast hits to 1257 proteins in 385 species: Archae - 24; Bacteria - 866; Metazoa - 414; Fungi - 61; Plants - 38; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).  protein_id AT5G48370.2p  transcript_id AT5G48370.2  protein_id AT5G48370.2p  transcript_id AT5G48370.2  
At5g48370	chr5:019600159	0.0	C/19600159-19600512,19599789-19599966,19599221-19599693,19599005-19599133,19598666-19598848	AT5G48370.1  CDS  gene_syn K23F3.9, K23F3_9  go_component peroxisome|GO:0005777|12154131|IDA  go_function acyl-CoA thioesterase activity|GO:0016291||ISS  go_function hydrolase activity, acting on ester bonds|GO:0016788||ISS  product thioesterase family protein  note thioesterase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: thioesterase family protein (TAIR:AT2G30720.1); Has 1582 Blast hits to 1273 proteins in 389 species: Archae - 24; Bacteria - 872; Metazoa - 411; Fungi - 61; Plants - 38; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).  protein_id AT5G48370.1p  transcript_id AT5G48370.1  protein_id AT5G48370.1p  transcript_id AT5G48370.1  
At5g48375	chr5:019603736	0.0	C/19603736-19603883,19603556-19603612,19603386-19603447,19603222-19603297,19602974-19603124,19602752-19602879,19602626-19602699,19602424-19602539,19602128-19602345,19601982-19602013,19601768-19601884,19601303-19601443	AT5G48375.1  CDS  gene_syn BETA GLUCOSIDASE 39, BGLU39, TGG3, THIOGLUCOSIDE GLUCOSIDASE 3  gene TGG3  function Is a myrosinase pseudogene that codes for a truncated and frameshifted protein. Although TGG3 apparently is a pseudogene, its mRNA is expressed specifically in stamen and petal according to RT-PCR analysis. Western analysis shows no band of the size expected for a TGG3 protein.  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function thioglucosidase activity|GO:0019137|12010464|IEP  product TGG3 (THIOGLUCOSIDE GLUCOSIDASE 3); hydrolase, hydrolyzing O-glycosyl compounds / thioglucosidase  note THIOGLUCOSIDE GLUCOSIDASE 3 (TGG3); FUNCTIONS IN: thioglucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, guard cell, stamen; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: TGG2 (GLUCOSIDE GLUCOHYDROLASE 2); hydrolase, hydrolyzing O-glycosyl compounds / thioglucosidase (TAIR:AT5G25980.2); Has 5259 Blast hits to 5074 proteins in 788 species: Archae - 96; Bacteria - 3031; Metazoa - 576; Fungi - 129; Plants - 796; Viruses - 0; Other Eukaryotes - 631 (source: NCBI BLink).  protein_id AT5G48375.1p  transcript_id AT5G48375.1  protein_id AT5G48375.1p  transcript_id AT5G48375.1  
At5g48380	chr5:019605693	0.0	C/19605693-19606532,19604584-19605606	AT5G48380.1  CDS  gene_syn K23F3.10  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function protein kinase activity|GO:0004672||ISS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein / protein kinase family protein  note leucine-rich repeat family protein / protein kinase family protein; FUNCTIONS IN: protein binding, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT1G27190.1); Has 76033 Blast hits to 53540 proteins in 1650 species: Archae - 26; Bacteria - 4465; Metazoa - 21735; Fungi - 2786; Plants - 38673; Viruses - 192; Other Eukaryotes - 8156 (source: NCBI BLink).  protein_id AT5G48380.1p  transcript_id AT5G48380.1  protein_id AT5G48380.1p  transcript_id AT5G48380.1  
At5g48385	chr5:019609471	0.0	W/19609471-19610533,19610757-19610929,19611272-19611712	AT5G48385.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G22440.1); Has 987 Blast hits to 921 proteins in 78 species: Archae - 0; Bacteria - 16; Metazoa - 58; Fungi - 7; Plants - 873; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT5G48385.1p  transcript_id AT5G48385.1  protein_id AT5G48385.1p  transcript_id AT5G48385.1  
At5g48390	chr5:019612078	0.0	W/19612078-19613423,19613598-19613787,19613877-19613909,19614043-19614663,19614743-19615363	AT5G48390.1  CDS  gene_syn ATZIP4, MJE7.2, MJE7_2  gene ATZIP4  function Defective in meiotic chromosome segregation  go_component chloroplast|GO:0009507|18431481|IDA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product ATZIP4; binding  note ATZIP4; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Meiosis specific protein SPO22 (InterPro:IPR013940), Tetratricopeptide region (InterPro:IPR013026); Has 88 Blast hits to 86 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 60; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G48390.1p  transcript_id AT5G48390.1  protein_id AT5G48390.1p  transcript_id AT5G48390.1  
At5g48400	chr5:019616244	0.0	W/19616244-19616529,19616639-19617882,19617990-19618296,19618390-19618763,19618854-19619246	AT5G48400.2  CDS  gene_syn ATGLR1.2, GLR1.2, GLUTAMATE RECEPTOR 1.2, MJE7.3, MJE7_3  gene ATGLR1.2  function member of Putative ligand-gated ion channel subunit family  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process cellular calcium ion homeostasis|GO:0006874|11379626|NAS  go_process response to light stimulus|GO:0009416|11379626|NAS  go_function intracellular ligand-gated ion channel activity|GO:0005217||ISS  product ATGLR1.2; intracellular ligand-gated ion channel  note ATGLR1.2; FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Glutamate receptor-related (InterPro:IPR015683), Extracellular ligand-binding receptor (InterPro:IPR001828), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: ATGLR1.3; intracellular ligand-gated ion channel (TAIR:AT5G48410.1); Has 2517 Blast hits to 2458 proteins in 167 species: Archae - 2; Bacteria - 157; Metazoa - 1992; Fungi - 0; Plants - 301; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT5G48400.2p  transcript_id AT5G48400.2  protein_id AT5G48400.2p  transcript_id AT5G48400.2  
At5g48400	chr5:019616244	0.0	W/19616244-19616529,19616639-19617882,19617990-19618296,19618390-19618805	AT5G48400.1  CDS  gene_syn ATGLR1.2, GLR1.2, GLUTAMATE RECEPTOR 1.2, MJE7.3, MJE7_3  gene ATGLR1.2  function member of Putative ligand-gated ion channel subunit family  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process cellular calcium ion homeostasis|GO:0006874|11379626|NAS  go_process response to light stimulus|GO:0009416|11379626|NAS  go_function intracellular ligand-gated ion channel activity|GO:0005217||ISS  product ATGLR1.2; intracellular ligand-gated ion channel  note ATGLR1.2; FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: ATGLR1.3; intracellular ligand-gated ion channel (TAIR:AT5G48410.1); Has 2399 Blast hits to 2373 proteins in 146 species: Archae - 2; Bacteria - 114; Metazoa - 1926; Fungi - 0; Plants - 294; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT5G48400.1p  transcript_id AT5G48400.1  protein_id AT5G48400.1p  transcript_id AT5G48400.1  
At5g48410	chr5:019620316	0.0	W/19620316-19620607,19620700-19621928,19622011-19622317,19622416-19622789,19622897-19623277	AT5G48410.1  CDS  gene_syn ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 1.3, ATGLR1.3, GLR1.3, GLUTAMATE RECEPTOR 1.3, MJE7.4, MJE7_4  gene GLR1.3  function member of Putative ligand-gated ion channel subunit family  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process cellular calcium ion homeostasis|GO:0006874|11379626|NAS  go_process response to light stimulus|GO:0009416|11379626|NAS  go_function intracellular ligand-gated ion channel activity|GO:0005217||ISS  product ATGLR1.3; intracellular ligand-gated ion channel  note ATGLR1.3; FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: ATGLR1.2; intracellular ligand-gated ion channel (TAIR:AT5G48400.2); Has 2330 Blast hits to 2295 proteins in 148 species: Archae - 2; Bacteria - 120; Metazoa - 1852; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT5G48410.1p  transcript_id AT5G48410.1  protein_id AT5G48410.1p  transcript_id AT5G48410.1  
At5g48420	chr5:019626362	0.0	C/19626362-19626790	AT5G48420.1  CDS  gene_syn MJE7.5, MJE7_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G48420.1p  transcript_id AT5G48420.1  protein_id AT5G48420.1p  transcript_id AT5G48420.1  
At5g48430	chr5:019627892	0.0	C/19627892-19629112	AT5G48430.1  CDS  gene_syn MJE7.6, MJE7_6  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  product aspartic-type endopeptidase  note aspartic-type endopeptidase; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, hypocotyl, root, leaf; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: extracellular dermal glycoprotein, putative / EDGP, putative (TAIR:AT1G03220.1); Has 673 Blast hits to 671 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 673; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G48430.1p  transcript_id AT5G48430.1  protein_id AT5G48430.1p  transcript_id AT5G48430.1  
At5g48440	chr5:019632330	0.0	C/19632330-19632588,19632042-19632191,19631546-19631760,19631387-19631457,19630977-19631142,19630572-19630743,19630209-19630453	AT5G48440.2  CDS  gene_syn MJE7.7, MJE7_7  go_component chloroplast|GO:0009507||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product oxidoreductase  note oxidoreductase; FUNCTIONS IN: oxidoreductase activity; LOCATED IN: chloroplast; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: FAD dependent oxidoreductase (InterPro:IPR006076); Has 2945 Blast hits to 2945 proteins in 616 species: Archae - 32; Bacteria - 1820; Metazoa - 200; Fungi - 53; Plants - 31; Viruses - 0; Other Eukaryotes - 809 (source: NCBI BLink).  protein_id AT5G48440.2p  transcript_id AT5G48440.2  protein_id AT5G48440.2p  transcript_id AT5G48440.2  
At5g48440	chr5:019632330	0.0	C/19632330-19632588,19632042-19632191,19631546-19631760,19631387-19631457,19630977-19631142,19630572-19630743,19630295-19630453,19630110-19630198,19629932-19630030	AT5G48440.1  CDS  gene_syn MJE7.7, MJE7_7  go_component chloroplast|GO:0009507||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product oxidoreductase  note oxidoreductase; FUNCTIONS IN: oxidoreductase activity; LOCATED IN: chloroplast; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: FAD dependent oxidoreductase (InterPro:IPR006076); Has 5978 Blast hits to 5956 proteins in 924 species: Archae - 48; Bacteria - 3948; Metazoa - 257; Fungi - 79; Plants - 47; Viruses - 0; Other Eukaryotes - 1599 (source: NCBI BLink).  protein_id AT5G48440.1p  transcript_id AT5G48440.1  protein_id AT5G48440.1p  transcript_id AT5G48440.1  
At5g48450	chr5:019635469	0.0	C/19635469-19635612,19635287-19635396,19634923-19635193,19634706-19634826,19634252-19634606,19633758-19634123,19633578-19633656,19633295-19633501	AT5G48450.1  CDS  gene_syn MJE7.8, MJE7_8, SKU5 Similar 3, sks3  gene sks3  function Encodes a protein with two DUF26 domains and a signal peptide for secretion. The protein is transported to the apoplast when it is expressed as a GFP fusion protein.  go_component plasma membrane|GO:0005886|17317660|IDA  go_function copper ion binding|GO:0005507||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function copper ion binding|GO:0005507||ISS  product sks3 (SKU5 Similar 3); copper ion binding / oxidoreductase  note SKU5 Similar 3 (sks3); FUNCTIONS IN: oxidoreductase activity, copper ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5; copper ion binding / oxidoreductase (TAIR:AT4G12420.1); Has 3824 Blast hits to 3804 proteins in 711 species: Archae - 2; Bacteria - 1142; Metazoa - 258; Fungi - 1464; Plants - 786; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink).  protein_id AT5G48450.1p  transcript_id AT5G48450.1  protein_id AT5G48450.1p  transcript_id AT5G48450.1  
At5g48460	chr5:019639279	0.0	C/19639279-19639365,19638992-19639165,19638669-19638910,19638418-19638589,19638292-19638330,19638138-19638206,19637912-19638028,19637591-19637802,19637337-19637492,19637054-19637253,19636814-19636971,19636627-19636723,19636454-19636545,19636225-19636374	AT5G48460.1  CDS  go_function actin binding|GO:0003779||IEA  go_process biological_process|GO:0008150||ND  product fimbrin-like protein, putative  note fimbrin-like protein, putative; FUNCTIONS IN: actin binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actinin-type, actin-binding, conserved site (InterPro:IPR001589), Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715); BEST Arabidopsis thaliana protein match is: FIM2 (FIMBRIN-LIKE PROTEIN 2); actin binding (TAIR:AT5G35700.1); Has 2573 Blast hits to 1976 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 2069; Fungi - 216; Plants - 75; Viruses - 0; Other Eukaryotes - 213 (source: NCBI BLink).  protein_id AT5G48460.1p  transcript_id AT5G48460.1  protein_id AT5G48460.1p  transcript_id AT5G48460.1  
At5g48465	chr5:019641603	0.0	W/19641603-19641674	AT5G48465.1  tRNA  gene_syn 67811.TRNA-LYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Lys (anticodon: TTT)  transcript_id AT5G48465.1  
At5g48470	chr5:019641810	0.0	W/19641810-19642133,19642471-19642626,19642849-19642917,19643015-19643185,19643268-19643411,19643506-19643664,19643777-19643842,19643943-19644002,19644083-19644127	AT5G48470.1  CDS  gene_syn MJE7.11, MJE7_11  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G48470.1p  transcript_id AT5G48470.1  protein_id AT5G48470.1p  transcript_id AT5G48470.1  
At5g48480	chr5:019644814	0.0	W/19644814-19645097,19645442-19645658	AT5G48480.1  CDS  gene_syn MJE7.12, MJE7_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 236 Blast hits to 236 proteins in 116 species: Archae - 0; Bacteria - 216; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G48480.1p  transcript_id AT5G48480.1  protein_id AT5G48480.1p  transcript_id AT5G48480.1  
At5g48485	chr5:019646317	0.0	C/19646317-19646625	AT5G48485.1  CDS  gene_syn DEFECTIVE IN INDUCED RESISTANCE 1, DIR1  gene DIR1  function encodes a putative apoplastic lipid transfer protein that is involved in systemic acquired resistance. Mutants in this gene exhibit wild-type local resistance to avirulent and virulent Pseudomonas syringae, but pathogenesis-related gene expression is abolished in uninoculated distant leaves and fail to develop SAR to virulent Pseudomonas or Peronospora parasitica.  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||ISS  go_process systemic acquired resistance|GO:0009627|12353036|IMP  go_function lipid transporter activity|GO:0005319|12353036|ISS  go_function lipid binding|GO:0008289||ISS  product DIR1 (DEFECTIVE IN INDUCED RESISTANCE 1); lipid binding / lipid transporter  note DEFECTIVE IN INDUCED RESISTANCE 1 (DIR1); FUNCTIONS IN: lipid binding, lipid transporter activity; INVOLVED IN: systemic acquired resistance, lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT5G48490.1); Has 129 Blast hits to 129 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G48485.1p  transcript_id AT5G48485.1  protein_id AT5G48485.1p  transcript_id AT5G48485.1  
At5g48490	chr5:019647932	0.0	C/19647932-19648237	AT5G48490.1  CDS  gene_syn MJE7.13, MJE7_13  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: DIR1 (DEFECTIVE IN INDUCED RESISTANCE 1); lipid binding / lipid transporter (TAIR:AT5G48485.1); Has 118 Blast hits to 118 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 118; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G48490.1p  transcript_id AT5G48490.1  protein_id AT5G48490.1p  transcript_id AT5G48490.1  
At5g48500	chr5:019653235	0.0	W/19653235-19653243,19653330-19653560,19653644-19653844,19653955-19654017	AT5G48500.1  CDS  gene_syn MJE7.14, MJE7_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10930.1); Has 32 Blast hits to 32 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G48500.1p  transcript_id AT5G48500.1  protein_id AT5G48500.1p  transcript_id AT5G48500.1  
At5g48510	chr5:019658080	0.0	W/19658080-19658217,19658346-19658882	AT5G48510.1  CDS  gene_syn MJE7.15, MJE7_15  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product speckle-type POZ protein-related  note speckle-type POZ protein-related; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: speckle-type POZ protein-related (TAIR:AT2G40450.1); Has 1842 Blast hits to 1830 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 1301; Fungi - 0; Plants - 426; Viruses - 43; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT5G48510.1p  transcript_id AT5G48510.1  protein_id AT5G48510.1p  transcript_id AT5G48510.1  
At5g48515	chr5:019660153	0.0	C/19660153-19660201,19659857-19660083	AT5G48515.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48605.1); Has 11 Blast hits to 11 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G48515.1p  transcript_id AT5G48515.1  protein_id AT5G48515.1p  transcript_id AT5G48515.1  
At5g48520	chr5:019661407	0.0	W/19661407-19661582,19661926-19661962,19662087-19662190,19662661-19662856,19662954-19663020,19663414-19663517,19663713-19663794,19663930-19663984,19664212-19664343,19664459-19664528,19664637-19664694,19664782-19664837,19664988-19665140,19665226-19665337,19665435-19665576,19665663-19665738,19665831-19665926,19666010-19666147	AT5G48520.1  CDS  gene_syn MJE7.16, MJE7_16  go_component nucleus|GO:0005634|14505352|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 493 Blast hits to 482 proteins in 96 species: Archae - 0; Bacteria - 26; Metazoa - 342; Fungi - 27; Plants - 37; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT5G48520.1p  transcript_id AT5G48520.1  protein_id AT5G48520.1p  transcript_id AT5G48520.1  
At5g48530	chr5:019668473	0.0	C/19668473-19668781,19668227-19668387,19668100-19668130,19667906-19667992	AT5G48530.1  CDS  gene_syn MJE7.17, MJE7_17  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G07440.1); Has 18 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G48530.1p  transcript_id AT5G48530.1  protein_id AT5G48530.1p  transcript_id AT5G48530.1  
At5g48540	chr5:019669096	0.0	C/19669096-19669887	AT5G48540.1  CDS  gene_syn MJE7.18, MJE7_18  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product 33 kDa secretory protein-related  note 33 kDa secretory protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: receptor protein kinase-related (TAIR:AT3G22060.1); Has 1085 Blast hits to 938 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1085; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G48540.1p  transcript_id AT5G48540.1  protein_id AT5G48540.1p  transcript_id AT5G48540.1  
At5g48543	chr5:019674392	0.0	W/19674392-19674452,19675084-19675292	AT5G48543.1  CDS  gene_syn LCR1, Low-molecular-weight cysteine-rich 1  gene LCR1  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR1 (Low-molecular-weight cysteine-rich 1)  note Low-molecular-weight cysteine-rich 1 (LCR1); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); BEST Arabidopsis thaliana protein match is: LCR9 (Low-molecular-weight cysteine-rich 9) (TAIR:AT2G27145.1); Has 21 Blast hits to 21 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G48543.1p  transcript_id AT5G48543.1  protein_id AT5G48543.1p  transcript_id AT5G48543.1  
At5g48545	chr5:019676228	0.0	W/19676228-19676419,19676493-19676548,19676742-19676799,19676968-19677034,19677545-19677600,19677694-19677747,19677835-19677945	AT5G48545.1  CDS  go_function catalytic activity|GO:0003824||IEA  go_process biological_process|GO:0008150||ND  product histidine triad family protein / HIT family protein  note histidine triad family protein / HIT family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Histidine triad-like motif (InterPro:IPR011146), Histidine triad (HIT) protein (InterPro:IPR001310), Histidine triad motif (InterPro:IPR011151); BEST Arabidopsis thaliana protein match is: zinc-binding protein, putative / protein kinase C inhibitor, putative (TAIR:AT1G31160.1); Has 6713 Blast hits to 6713 proteins in 1490 species: Archae - 179; Bacteria - 3168; Metazoa - 358; Fungi - 170; Plants - 80; Viruses - 8; Other Eukaryotes - 2750 (source: NCBI BLink).  protein_id AT5G48545.1p  transcript_id AT5G48545.1  protein_id AT5G48545.1p  transcript_id AT5G48545.1  
At5g48550	chr5:019678917	0.0	W/19678917-19679564,19679925-19680560	AT5G48550.1  CDS  gene_syn K15N18.1, K15N18_1  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: leaf whorl; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G47730.1); Has 160 Blast hits to 160 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G48550.1p  transcript_id AT5G48550.1  protein_id AT5G48550.1p  transcript_id AT5G48550.1  
At5g48560	chr5:019684160	0.0	W/19684160-19684897,19685056-19685268,19685704-19685769,19685898-19685966,19686097-19686174,19686460-19686693,19686773-19686871	AT5G48560.1  CDS  gene_syn K15N18.2, K15N18_2  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT3G07340.1); Has 1985 Blast hits to 1807 proteins in 161 species: Archae - 0; Bacteria - 13; Metazoa - 190; Fungi - 79; Plants - 1294; Viruses - 1; Other Eukaryotes - 408 (source: NCBI BLink).  protein_id AT5G48560.1p  transcript_id AT5G48560.1  protein_id AT5G48560.1p  transcript_id AT5G48560.1  
At5g48570	chr5:019693449	0.0	C/19693449-19693656,19693283-19693369,19692799-19693059,19692616-19692690,19692466-19692546,19692185-19692382,19692000-19692095,19691722-19691897,19691515-19691637,19691291-19691437,19691075-19691202,19690896-19691001,19690746-19690796	AT5G48570.1  CDS  gene_syn K15N18.12, K15N18_12  go_component vacuole|GO:0005773|15539469|IDA  go_process protein folding|GO:0006457||IEA  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function FK506 binding|GO:0005528||ISS  product peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative  note peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity, calmodulin binding; INVOLVED IN: protein folding; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026), Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: ROF1 (ROTAMASE FKBP 1); FK506 binding / calmodulin binding / peptidyl-prolyl cis-trans isomerase (TAIR:AT3G25230.2); Has 16088 Blast hits to 10378 proteins in 1195 species: Archae - 169; Bacteria - 5418; Metazoa - 5004; Fungi - 1116; Plants - 1083; Viruses - 0; Other Eukaryotes - 3298 (source: NCBI BLink).  protein_id AT5G48570.1p  transcript_id AT5G48570.1  protein_id AT5G48570.1p  transcript_id AT5G48570.1  
At5g48575	chr5:019694613	0.0	C/19694613-19694822,19694465-19694548	AT5G48575.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1216 (InterPro:IPR009605); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28810.1); Has 169 Blast hits to 119 proteins in 39 species: Archae - 0; Bacteria - 14; Metazoa - 24; Fungi - 12; Plants - 46; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT5G48575.1p  transcript_id AT5G48575.1  protein_id AT5G48575.1p  transcript_id AT5G48575.1  
At5g48580	chr5:019697238	0.0	C/19697238-19697304,19697093-19697142,19696765-19696827,19696568-19696658,19696376-19696480,19696156-19696271	AT5G48580.1  CDS  gene_syn FK506- AND RAPAMYCIN-BINDING PROTEIN 15 KD-2, FKBP15-2, IMMUNOPHILIN, K15N18.5, K15N18_5  gene FKBP15-2  function immunophilin (FKBP15-2)  go_component vacuole|GO:0005773|15539469|IDA  go_process protein folding|GO:0006457||IEA  go_component chloroplast thylakoid lumen|GO:0009543||ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  go_function FK506 binding|GO:0005528||ISS  product FKBP15-2; FK506 binding / peptidyl-prolyl cis-trans isomerase  note FKBP15-2; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: chloroplast thylakoid lumen, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FKBP15-1; FK506 binding / peptidyl-prolyl cis-trans isomerase (TAIR:AT3G25220.1); Has 7728 Blast hits to 7273 proteins in 1222 species: Archae - 98; Bacteria - 3659; Metazoa - 1590; Fungi - 359; Plants - 462; Viruses - 0; Other Eukaryotes - 1560 (source: NCBI BLink).  protein_id AT5G48580.1p  transcript_id AT5G48580.1  protein_id AT5G48580.1p  transcript_id AT5G48580.1  
At5g48590	chr5:019698476	0.0	W/19698476-19698819,19699081-19699771	AT5G48590.1  CDS  gene_syn K15N18.6, K15N18_6  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF760 (InterPro:IPR008479); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G07310.1); Has 83 Blast hits to 81 proteins in 17 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G48590.1p  transcript_id AT5G48590.1  protein_id AT5G48590.1p  transcript_id AT5G48590.1  
At5g48595	chr5:019700640	0.0	W/19700640-19700688,19700775-19701022	AT5G48595.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48605.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G48595.1p  transcript_id AT5G48595.1  protein_id AT5G48595.1p  transcript_id AT5G48595.1  
At5g48600	chr5:019701908	0.0	W/19701908-19702051,19702307-19702396,19702473-19702574,19702659-19702835,19702910-19703040,19703140-19703218,19703292-19703449,19703534-19703609,19703734-19703862,19703932-19704076,19704271-19704401,19704656-19704808,19704886-19705075,19705290-19705423,19705754-19705912,19706096-19706404,19706504-19706680,19706906-19706980,19707060-19707269,19707347-19707436,19707517-19707638,19707709-19707864,19707951-19708058,19708160-19708220,19708428-19708562,19708643-19708730,19708807-19708879,19708968-19709091	AT5G48600.1  CDS  gene_syn ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3, ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ATCAP-C, ATSMC3, ATSMC4, K15N18.7, K15N18_7, SMC3, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3  gene ATSMC3  function member of SMC subfamily  go_component chromosome|GO:0005694||IEA  go_process chromosome organization|GO:0051276||IEA  go_component nucleus|GO:0005634||ISS  go_process chromosome segregation|GO:0007059||ISS  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  go_function ATP binding|GO:0005524||ISS  product ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3); ATP binding / transporter  note ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3 (ATSMC3); FUNCTIONS IN: transporter activity, ATP binding; INVOLVED IN: chromosome segregation, chromosome organization; LOCATED IN: chromosome, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: TTN8 (TITAN8); ATP binding / transporter (TAIR:AT3G54670.1); Has 146374 Blast hits to 66477 proteins in 2298 species: Archae - 1537; Bacteria - 19788; Metazoa - 63619; Fungi - 9642; Plants - 4876; Viruses - 926; Other Eukaryotes - 45986 (source: NCBI BLink).  protein_id AT5G48600.1p  transcript_id AT5G48600.1  protein_id AT5G48600.1p  transcript_id AT5G48600.1  
At5g48605	chr5:019710215	0.0	W/19710215-19710263,19710352-19710578	AT5G48605.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||IEA  product unknown protein  note INVOLVED IN: defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Defensin, invertebrate/fungal (InterPro:IPR001542); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48595.1); Has 11 Blast hits to 11 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G48605.1p  transcript_id AT5G48605.1  protein_id AT5G48605.1p  transcript_id AT5G48605.1  
At5g48610	chr5:019712614	0.0	W/19712614-19712691,19713875-19714861	AT5G48610.1  CDS  gene_syn K15N18.8, K15N18_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 40172 Blast hits to 20678 proteins in 907 species: Archae - 83; Bacteria - 2457; Metazoa - 17275; Fungi - 3289; Plants - 1108; Viruses - 205; Other Eukaryotes - 15755 (source: NCBI BLink).  protein_id AT5G48610.1p  transcript_id AT5G48610.1  protein_id AT5G48610.1p  transcript_id AT5G48610.1  
At5g48620	chr5:019717406	0.0	W/19717406-19718282,19718410-19718556,19719230-19720932	AT5G48620.1  CDS  gene_syn K15N18.9, K15N18_9  go_component plasma membrane|GO:0005886|17317660|IDA  go_process apoptosis|GO:0006915||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative  note disease resistance protein (CC-NBS-LRR class), putative; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182); BEST Arabidopsis thaliana protein match is: RPP8 (RECOGNITION OF PERONOSPORA PARASITICA 8); nucleotide binding (TAIR:AT5G43470.2); Has 10016 Blast hits to 9482 proteins in 394 species: Archae - 16; Bacteria - 465; Metazoa - 451; Fungi - 39; Plants - 8947; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT5G48620.1p  transcript_id AT5G48620.1  protein_id AT5G48620.1p  transcript_id AT5G48620.1  
At5g48630	chr5:019723169	0.0	C/19723169-19723200,19722972-19723078,19722819-19722858,19722681-19722725,19722482-19722600,19722276-19722390,19722126-19722176,19721855-19722002,19721663-19721767	AT5G48630.1  CDS  gene_syn K15N18.10, K15N18_10  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase activity|GO:0004693||ISS  product cyclin family protein  note cyclin family protein; FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like (InterPro:IPR011028), Transcription regulator cyclin (InterPro:IPR015429), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: cyclin family protein (TAIR:AT5G48640.1); Has 1373 Blast hits to 1369 proteins in 188 species: Archae - 0; Bacteria - 0; Metazoa - 752; Fungi - 310; Plants - 195; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT5G48630.1p  transcript_id AT5G48630.1  protein_id AT5G48630.1p  transcript_id AT5G48630.1  
At5g48640	chr5:019725610	0.0	C/19725610-19725641,19725387-19725493,19725197-19725236,19724985-19725029,19724672-19724790,19724449-19724563,19724145-19724195,19723878-19724025,19723653-19723757	AT5G48640.1  CDS  gene_syn K15N18.11, K15N18_11  go_component cellular_component|GO:0005575||ND  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase activity|GO:0004693||ISS  product cyclin family protein  note cyclin family protein; FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: cyclin family protein (TAIR:AT5G48630.1); Has 1328 Blast hits to 1324 proteins in 180 species: Archae - 0; Bacteria - 0; Metazoa - 763; Fungi - 291; Plants - 180; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).  protein_id AT5G48640.1p  transcript_id AT5G48640.1  protein_id AT5G48640.1p  transcript_id AT5G48640.1  
At5g48650	chr5:019727279	0.0	W/19727279-19727323,19727443-19727580,19727768-19728074,19728146-19728375,19728485-19728704,19728818-19728945,19729065-19729130,19729215-19729278,19729355-19729533	AT5G48650.1  CDS  gene_syn K15N18.17, K15N18_17  go_component intracellular|GO:0005622||IEA  go_component endomembrane system|GO:0012505||IEA  go_process transport|GO:0006810||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process nucleocytoplasmic transport|GO:0006913||ISS  go_function RNA binding|GO:0003723||ISS  product nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein  note nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: transport, nucleocytoplasmic transport; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G25150.1); Has 2733 Blast hits to 2667 proteins in 292 species: Archae - 4; Bacteria - 167; Metazoa - 1381; Fungi - 400; Plants - 549; Viruses - 0; Other Eukaryotes - 232 (source: NCBI BLink).  protein_id AT5G48650.1p  transcript_id AT5G48650.1  protein_id AT5G48650.1p  transcript_id AT5G48650.1  
At5g48655	chr5:019732274	0.0	C/19732274-19732486,19732114-19732171,19731885-19732000,19731575-19731799	AT5G48655.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process response to chitin|GO:0010200|17722694|IEP  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G07200.2); Has 3740 Blast hits to 3729 proteins in 236 species: Archae - 0; Bacteria - 0; Metazoa - 2631; Fungi - 439; Plants - 221; Viruses - 18; Other Eukaryotes - 431 (source: NCBI BLink).  protein_id AT5G48655.1p  transcript_id AT5G48655.1  protein_id AT5G48655.1p  transcript_id AT5G48655.1  
At5g48655	chr5:019732274	0.0	C/19732274-19732486,19732114-19732171,19731885-19732000,19731575-19731799	AT5G48655.2  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process response to chitin|GO:0010200|17722694|IEP  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G07200.2); Has 3740 Blast hits to 3729 proteins in 236 species: Archae - 0; Bacteria - 0; Metazoa - 2631; Fungi - 439; Plants - 221; Viruses - 18; Other Eukaryotes - 431 (source: NCBI BLink).  protein_id AT5G48655.2p  transcript_id AT5G48655.2  protein_id AT5G48655.2p  transcript_id AT5G48655.2  
At5g48655	chr5:019732274	0.0	C/19732274-19732486,19732114-19732171,19731885-19732000,19731575-19731799	AT5G48655.3  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process response to chitin|GO:0010200|17722694|IEP  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G07200.2); Has 3740 Blast hits to 3729 proteins in 236 species: Archae - 0; Bacteria - 0; Metazoa - 2631; Fungi - 439; Plants - 221; Viruses - 18; Other Eukaryotes - 431 (source: NCBI BLink).  protein_id AT5G48655.3p  transcript_id AT5G48655.3  protein_id AT5G48655.3p  transcript_id AT5G48655.3  
At5g48657	chr5:019734504	0.0	C/19734504-19734845,19734019-19734414	AT5G48657.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product defense protein-related  note defense protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G07195.1); Has 49 Blast hits to 47 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 6; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G48657.1p  transcript_id AT5G48657.1  protein_id AT5G48657.1p  transcript_id AT5G48657.1  
At5g48657	chr5:019735511	0.0	C/19735511-19735516,19734504-19734935,19734232-19734414,19734120-19734158	AT5G48657.2  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product defense protein-related  note defense protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Defence response, Rin4 (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G07195.1); Has 100 Blast hits to 98 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 12; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT5G48657.2p  transcript_id AT5G48657.2  protein_id AT5G48657.2p  transcript_id AT5G48657.2  
At5g48660	chr5:019736986	0.0	W/19736986-19737271,19737954-19738327	AT5G48660.1  CDS  gene_syn K15N18.15, K15N18_15  go_component endoplasmic reticulum|GO:0005783||IEA  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, integral to membrane, endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: B-cell receptor-associated 31-like (InterPro:IPR008417); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G07190.1); Has 2128 Blast hits to 1846 proteins in 298 species: Archae - 50; Bacteria - 292; Metazoa - 902; Fungi - 143; Plants - 114; Viruses - 11; Other Eukaryotes - 616 (source: NCBI BLink).  protein_id AT5G48660.1p  transcript_id AT5G48660.1  protein_id AT5G48660.1p  transcript_id AT5G48660.1  
At5g48670	chr5:019738825	0.0	C/19738825-19739790	AT5G48670.1  CDS  gene_syn AGAMOUS-LIKE 80, AGL80, FEM111, K15N18.16, K15N18_16  gene AGL80  function AGL80 is a member of the MADS box family of genes. AGL80 functions as a transcription factor within the central cell gene regulatory network and controls the expression of downstream genes required for central cell development and function.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634|16798889|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL80 (AGAMOUS-LIKE 80); DNA binding / transcription factor  note AGAMOUS-LIKE 80 (AGL80); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: central cell, endosperm; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding / transcription factor (TAIR:AT5G27810.1); Has 3762 Blast hits to 3754 proteins in 451 species: Archae - 0; Bacteria - 0; Metazoa - 530; Fungi - 197; Plants - 2943; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).  protein_id AT5G48670.1p  transcript_id AT5G48670.1  protein_id AT5G48670.1p  transcript_id AT5G48670.1  
At5g48675	chr5:019744175	0.0	C/19744175-19744246	AT5G48675.1  tRNA  gene_syn 67812.TRNA-LYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Lys (anticodon: TTT)  transcript_id AT5G48675.1  
At5g48680	chr5:019745935	0.0	C/19745935-19746053,19745644-19745711,19745286-19745533,19745107-19745181,19744950-19745012,19744725-19744772	AT5G48680.1  CDS  gene_syn K15N18.3, K15N18_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product sterile alpha motif (SAM) domain-containing protein  note sterile alpha motif (SAM) domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Sterile alpha motif SAM (InterPro:IPR001660), Sterile alpha motif homology (InterPro:IPR010993); BEST Arabidopsis thaliana protein match is: sterile alpha motif (SAM) domain-containing protein (TAIR:AT3G07170.1); Has 378 Blast hits to 377 proteins in 60 species: Archae - 0; Bacteria - 11; Metazoa - 270; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT5G48680.1p  transcript_id AT5G48680.1  protein_id AT5G48680.1p  transcript_id AT5G48680.1  
At5g48690	chr5:019748583	0.0	C/19748583-19748617,19748424-19748510,19748281-19748341,19748144-19748211,19747985-19748066,19747812-19747895,19747662-19747745,19747270-19747590	AT5G48690.2  CDS  gene_syn K24G6.2, K24G6_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: PUG (InterPro:IPR006567); BEST Arabidopsis thaliana protein match is: ubiquitin-associated (UBA)/TS-N domain-containing protein (TAIR:AT1G04850.1); Has 3444 Blast hits to 2536 proteins in 222 species: Archae - 6; Bacteria - 86; Metazoa - 1337; Fungi - 442; Plants - 98; Viruses - 9; Other Eukaryotes - 1466 (source: NCBI BLink).  protein_id AT5G48690.2p  transcript_id AT5G48690.2  protein_id AT5G48690.2p  transcript_id AT5G48690.2  
At5g48690	chr5:019748953	0.0	C/19748953-19748968,19748744-19748839,19748583-19748659,19748428-19748510,19748281-19748341,19748144-19748211,19747985-19748066,19747812-19747895,19747662-19747745,19747270-19747590	AT5G48690.1  CDS  gene_syn K24G6.2, K24G6_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), PUG (InterPro:IPR006567), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: ubiquitin-associated (UBA)/TS-N domain-containing protein (TAIR:AT1G04850.1); Has 6741 Blast hits to 4773 proteins in 362 species: Archae - 9; Bacteria - 355; Metazoa - 2762; Fungi - 868; Plants - 184; Viruses - 19; Other Eukaryotes - 2544 (source: NCBI BLink).  protein_id AT5G48690.1p  transcript_id AT5G48690.1  protein_id AT5G48690.1p  transcript_id AT5G48690.1  
At5g48700	chr5:019749900	0.0	C/19749900-19750013,19749666-19749821,19749494-19749577	AT5G48700.1  CDS  gene_syn K24G6.3, K24G6_3  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product ubiquitin-related  note ubiquitin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: ubiquitin-related (TAIR:AT5G48710.1); Has 644 Blast hits to 643 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 405; Fungi - 83; Plants - 83; Viruses - 1; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT5G48700.1p  transcript_id AT5G48700.1  protein_id AT5G48700.1p  transcript_id AT5G48700.1  
At5g48710	chr5:019755468	0.0	C/19755468-19755572,19755225-19755377,19755065-19755151	AT5G48710.1  CDS  gene_syn K24G6.4, K24G6_4  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  product ubiquitin-related  note ubiquitin-related; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: ubiquitin-related (TAIR:AT5G48700.1); Has 703 Blast hits to 702 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 438; Fungi - 87; Plants - 102; Viruses - 1; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT5G48710.1p  transcript_id AT5G48710.1  protein_id AT5G48710.1p  transcript_id AT5G48710.1  
At5g48720	chr5:019759233	0.0	W/19759233-19759255,19759867-19759925,19760018-19760140,19760229-19760365,19760711-19760774,19760852-19760954,19761042-19761079,19761161-19761244,19761350-19761621	AT5G48720.2  CDS  gene_syn K24G6.5, K24G6_5, X-RAY INDUCED TRANSCRIPT, X-RAY INDUCED TRANSCRIPT 1, XRI, XRI1  gene XRI1  function Encodes XRI1 (X-ray induced 1). Required for post-meiotic stages of pollen development and male and female meiosis. Maybe required for meiotic DNA repair. Inducible by X-ray. Homozygous xri1 mutants are sterile due to extensive chromosome fragmentation.  go_component nucleus|GO:0005634|19187040|IDA  go_process DNA repair|GO:0006281|19187040|IMP  go_process male meiosis|GO:0007140|19187040|IMP  go_process female meiosis|GO:0007143|19187040|IMP  go_process pollen development|GO:0009555|19187040|IMP  go_process response to X-ray|GO:0010165|19187040|IEP  go_function molecular_function|GO:0003674||ND  product XRI1 (X-RAY INDUCED TRANSCRIPT 1)  note X-RAY INDUCED TRANSCRIPT 1 (XRI1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA repair, female meiosis, response to X-ray, male meiosis, pollen development; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01990.1).  protein_id AT5G48720.2p  transcript_id AT5G48720.2  protein_id AT5G48720.2p  transcript_id AT5G48720.2  
At5g48720	chr5:019760038	0.0	W/19760038-19760140,19760229-19760365,19760711-19760774,19760852-19760954,19761042-19761079,19761161-19761244,19761350-19761621	AT5G48720.1  CDS  gene_syn K24G6.5, K24G6_5, X-RAY INDUCED TRANSCRIPT, X-RAY INDUCED TRANSCRIPT 1, XRI, XRI1  gene XRI1  function Encodes XRI1 (X-ray induced 1). Required for post-meiotic stages of pollen development and male and female meiosis. Maybe required for meiotic DNA repair. Inducible by X-ray. Homozygous xri1 mutants are sterile due to extensive chromosome fragmentation.  go_component nucleus|GO:0005634|19187040|IDA  go_process DNA repair|GO:0006281|19187040|IMP  go_process male meiosis|GO:0007140|19187040|IMP  go_process female meiosis|GO:0007143|19187040|IMP  go_process pollen development|GO:0009555|19187040|IMP  go_process response to X-ray|GO:0010165|19187040|IEP  go_function molecular_function|GO:0003674||ND  product XRI1 (X-RAY INDUCED TRANSCRIPT 1)  note X-RAY INDUCED TRANSCRIPT 1 (XRI1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA repair, female meiosis, response to X-ray, male meiosis, pollen development; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01990.1); Has 59 Blast hits to 59 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G48720.1p  transcript_id AT5G48720.1  protein_id AT5G48720.1p  transcript_id AT5G48720.1  
At5g48730	chr5:019763152	0.0	W/19763152-19763556,19763774-19764141,19764422-19765136	AT5G48730.1  CDS  gene_syn K24G6.6, K24G6_6  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53170.1); Has 13431 Blast hits to 4993 proteins in 158 species: Archae - 3; Bacteria - 10; Metazoa - 241; Fungi - 171; Plants - 12464; Viruses - 0; Other Eukaryotes - 542 (source: NCBI BLink).  protein_id AT5G48730.1p  transcript_id AT5G48730.1  protein_id AT5G48730.1p  transcript_id AT5G48730.1  
At5g48740	chr5:019769257	0.0	C/19769257-19769314,19768636-19769173,19768094-19768545,19767897-19768014,19767747-19767815,19767595-19767663,19767449-19767517,19767294-19767365,19767144-19767212,19766836-19767065,19766551-19766756,19766304-19766430,19766137-19766205,19765851-19766040,19765633-19765765,19765324-19765542	AT5G48740.1  CDS  gene_syn K24G6.7, K24G6_7  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat family protein / protein kinase family protein  note leucine-rich repeat family protein / protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / protein kinase family protein (TAIR:AT1G67720.1); Has 120918 Blast hits to 98060 proteins in 3133 species: Archae - 82; Bacteria - 10366; Metazoa - 46990; Fungi - 7601; Plants - 38063; Viruses - 403; Other Eukaryotes - 17413 (source: NCBI BLink).  protein_id AT5G48740.1p  transcript_id AT5G48740.1  protein_id AT5G48740.1p  transcript_id AT5G48740.1  
At5g48750	chr5:019770052	0.0	C/19770052-19770819	AT5G48750.1  CDS  gene_syn K24G6.8, K24G6_8  go_component membrane|GO:0016020|10080694|ISS  go_process multicellular organismal development|GO:0007275||ISS  go_process extracellular matrix organization|GO:0030198|10080694|ISS  product auxin-responsive protein, putative  note auxin-responsive protein, putative; INVOLVED IN: multicellular organismal development, extracellular matrix organization; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF568, DOMON-like (InterPro:IPR007613), DOMON related (InterPro:IPR005018), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT3G59070.1); Has 187 Blast hits to 187 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 187; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G48750.1p  transcript_id AT5G48750.1  protein_id AT5G48750.1p  transcript_id AT5G48750.1  
At5g48760	chr5:019772415	0.0	C/19772415-19772686,19772102-19772218,19771922-19772009,19771315-19771458	AT5G48760.1  CDS  gene_syn K24G6.9, K24G6_9  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L13A (RPL13aD)  note 60S ribosomal protein L13A (RPL13aD); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13 (InterPro:IPR005822), Ribosomal protein L13, eukaryotic/archaeal (InterPro:IPR005755); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L13A (RPL13aC) (TAIR:AT4G13170.1); Has 1705 Blast hits to 1705 proteins in 521 species: Archae - 212; Bacteria - 464; Metazoa - 292; Fungi - 124; Plants - 165; Viruses - 0; Other Eukaryotes - 448 (source: NCBI BLink).  protein_id AT5G48760.1p  transcript_id AT5G48760.1  protein_id AT5G48760.1p  transcript_id AT5G48760.1  
At5g48760	chr5:019772415	0.0	C/19772415-19772686,19772102-19772218,19771922-19772009,19771315-19771458	AT5G48760.2  CDS  gene_syn K24G6.9, K24G6_9  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L13A (RPL13aD)  note 60S ribosomal protein L13A (RPL13aD); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13 (InterPro:IPR005822), Ribosomal protein L13, eukaryotic/archaeal (InterPro:IPR005755); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L13A (RPL13aC) (TAIR:AT4G13170.1); Has 1705 Blast hits to 1705 proteins in 521 species: Archae - 212; Bacteria - 464; Metazoa - 292; Fungi - 124; Plants - 165; Viruses - 0; Other Eukaryotes - 448 (source: NCBI BLink).  protein_id AT5G48760.2p  transcript_id AT5G48760.2  protein_id AT5G48760.2p  transcript_id AT5G48760.2  
At5g48775	chr5:019774170	0.0	W/19774170-19776460	AT5G48775.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT5G48770  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G48775.1  
At5g48770	chr5:019776773	0.0	C/19776773-19777242,19775600-19776695,19775181-19775486,19773882-19775066,19773277-19773792	AT5G48770.1  CDS  gene_syn K24G6.10, K24G6_10  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, protein binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: ATP binding / protein binding / transmembrane receptor (TAIR:AT1G72840.1); Has 17512 Blast hits to 12414 proteins in 520 species: Archae - 26; Bacteria - 1242; Metazoa - 3369; Fungi - 142; Plants - 12039; Viruses - 0; Other Eukaryotes - 694 (source: NCBI BLink).  protein_id AT5G48770.1p  transcript_id AT5G48770.1  protein_id AT5G48770.1p  transcript_id AT5G48770.1  
At5g48780	chr5:019777511	0.0	W/19777511-19777980,19778065-19779604	AT5G48780.1  CDS  gene_syn K24G6.11, K24G6_11  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS class), putative  note disease resistance protein (TIR-NBS class), putative; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: stem, male gametophyte, flower, root, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G17680.1); Has 10485 Blast hits to 6833 proteins in 249 species: Archae - 2; Bacteria - 78; Metazoa - 5; Fungi - 5; Plants - 10387; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G48780.1p  transcript_id AT5G48780.1  protein_id AT5G48780.1p  transcript_id AT5G48780.1  
At5g48790	chr5:019781903	0.0	C/19781903-19781977,19781530-19781685,19781263-19781310,19781140-19781179,19780934-19781034,19780653-19780845,19780464-19780562,19780212-19780329,19780010-19780130	AT5G48790.1  CDS  gene_syn K24G6.12, K24G6_12  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G73060.1); Has 72 Blast hits to 72 proteins in 29 species: Archae - 0; Bacteria - 27; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G48790.1p  transcript_id AT5G48790.1  protein_id AT5G48790.1p  transcript_id AT5G48790.1  
At5g48800	chr5:019786881	0.0	W/19786881-19786987,19787114-19787180,19787263-19788387,19788458-19789003	AT5G48800.1  CDS  gene_syn K24G6.13, K24G6_13  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to light stimulus|GO:0009416||IEA  go_function signal transducer activity|GO:0004871||IEA  go_function protein binding|GO:0005515||IEA  go_process response to light stimulus|GO:0009416||ISS  go_function signal transducer activity|GO:0004871||ISS  product phototropic-responsive NPH3 family protein  note phototropic-responsive NPH3 family protein; FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: phototropic-responsive NPH3 family protein (TAIR:AT1G03010.1); Has 442 Blast hits to 424 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 442; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G48800.1p  transcript_id AT5G48800.1  protein_id AT5G48800.1p  transcript_id AT5G48800.1  
At5g48810	chr5:019790094	0.0	C/19790094-19790180,19789592-19789658,19789249-19789517	AT5G48810.1  CDS  gene_syn ARABIDOPSIS CYTOCHROME B5 ISOFORM D, ATB5-B, ATCB5-D, B5  3, CB5-D, CYTOCHROME B5 ISOFORM D  gene CB5-D  function Encodes a cytochrome b5 isoform that localizes to the ER. The C-terminal portion of the protein appears to be capable of inserting into a plant microsomal membrane in vitro and the protein appears to be subject to glycosylation.  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum membrane|GO:0005789|9880378|NAS  go_function heme binding|GO:0020037|17322552|ISS  product CB5-D (CYTOCHROME B5 ISOFORM D); heme binding  note CYTOCHROME B5 ISOFORM D (CB5-D); FUNCTIONS IN: heme binding; INVOLVED IN: defense response to bacterium; LOCATED IN: endoplasmic reticulum, endoplasmic reticulum membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b5, heme-binding site (InterPro:IPR018506), Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: CB5-B (CYTOCHROME B5 ISOFORM B); heme binding (TAIR:AT2G32720.1); Has 3059 Blast hits to 3025 proteins in 386 species: Archae - 1; Bacteria - 19; Metazoa - 879; Fungi - 1080; Plants - 556; Viruses - 3; Other Eukaryotes - 521 (source: NCBI BLink).  protein_id AT5G48810.1p  transcript_id AT5G48810.1  protein_id AT5G48810.1p  transcript_id AT5G48810.1  
At5g48820	chr5:019793943	0.0	C/19793943-19794346,19792756-19792950,19792608-19792677	AT5G48820.1  CDS  gene_syn ICK6, INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE, K24G6.15, K24G6_15, KIP-RELATED PROTEIN 3, KRP3  gene ICK6  function Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. Binds to D type and CDC2A cyclins and may inhibit cell cycle. Seven KRP genes were found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization.  go_component nucleus|GO:0005634||IEA  go_process negative regulation of cyclin-dependent protein kinase activity|GO:0045736|16376885|IDA  go_process negative regulation of cyclin-dependent protein kinase activity|GO:0045736||TAS  go_function cyclin-dependent protein kinase inhibitor activity|GO:0004861||TAS  go_function cyclin binding|GO:0030332||IPI  product ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE); cyclin binding / cyclin-dependent protein kinase inhibitor  note INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE (ICK6); FUNCTIONS IN: cyclin binding, cyclin-dependent protein kinase inhibitor activity; INVOLVED IN: negative regulation of cyclin-dependent protein kinase activity; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-dependent kinase inhibitor (InterPro:IPR003175), Cyclin-dependent kinase inhibitor, plant (InterPro:IPR016701); BEST Arabidopsis thaliana protein match is: KRP4; cyclin binding / cyclin-dependent protein kinase inhibitor (TAIR:AT2G32710.2); Has 125 Blast hits to 125 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 123; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G48820.1p  transcript_id AT5G48820.1  protein_id AT5G48820.1p  transcript_id AT5G48820.1  
At5g48830	chr5:019802510	0.0	C/19802510-19802625,19802112-19802417,19801769-19801985,19801277-19801414,19800862-19801191,19800519-19800778,19800269-19800437	AT5G48830.1  CDS  gene_syn K24G6.16, K24G6_16  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 85 Blast hits to 84 proteins in 33 species: Archae - 0; Bacteria - 48; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT5G48830.1p  transcript_id AT5G48830.1  protein_id AT5G48830.1p  transcript_id AT5G48830.1  
At5g48835	chr5:019803135	0.0	W/19803135-19803172	AT5G48835.1  tRNA  gene_syn 67813.TRNA-MET-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Met (anticodon: CAT)  transcript_id AT5G48835.1  
At5g48840	chr5:019804478	0.0	C/19804478-19805041,19804275-19804388,19804054-19804185,19803823-19803945	AT5G48840.1  CDS  gene_syn ARABIDOPSIS HOMOLOG OF BACTERIAL PANC, ARABIDOPSIS THALIANA PANTOTHENATE SYNTHETASE, ATPTS, K24G6.18, K24G6_18, PANC, PANTOTHENATE SYNTHETASE, PS, PTS  gene PANC  function Encodes a pantothenate synthetase that appears to be located in the cytosol. This protein is expected to play a role in pantothenate (vitamin B5) biosynthesis. Analysis of the catalytic properties of this enzyme indicate that it might be able to synthesize adequate amounts of pantothenate even in the presence of low levels of pantoate.  go_component cytosol|GO:0005829|14675432|IDA  go_process embryonic development ending in seed dormancy|GO:0009793|17932772|IMP  go_process pantothenate biosynthetic process|GO:0015940|17932772|IMP  go_process pantothenate biosynthetic process|GO:0015940||ISS  go_function pantoate-beta-alanine ligase activity|GO:0004592|14675432|IGI  go_function pantoate-beta-alanine ligase activity|GO:0004592|17040917|IDA  go_function pantoate-beta-alanine ligase activity|GO:0004592||ISS  go_function protein homodimerization activity|GO:0042803|17040917|IDA  product PANC (ARABIDOPSIS HOMOLOG OF BACTERIAL PANC); pantoate-beta-alanine ligase/ protein homodimerization  note ARABIDOPSIS HOMOLOG OF BACTERIAL PANC (PANC); FUNCTIONS IN: protein homodimerization activity, pantoate-beta-alanine ligase activity; INVOLVED IN: embryonic development ending in seed dormancy, pantothenate biosynthetic process; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Pantoate-beta-alanine ligase (InterPro:IPR003721); Has 4713 Blast hits to 4713 proteins in 1126 species: Archae - 0; Bacteria - 2495; Metazoa - 1; Fungi - 94; Plants - 28; Viruses - 0; Other Eukaryotes - 2095 (source: NCBI BLink).  protein_id AT5G48840.1p  transcript_id AT5G48840.1  protein_id AT5G48840.1p  transcript_id AT5G48840.1  
At5g48850	chr5:019807559	0.0	C/19807559-19807699,19806352-19806564,19806083-19806238,19805576-19805986	AT5G48850.1  CDS  gene_syn ATSDI1, K24G6.19, K24G6_19, SULPHUR DEFICIENCY-INDUCED 1  gene ATSDI1  function homologous to the wheat sulphate deficiency-induced gene sdi1. Expression in root and leaf is induced by sulfur starvation. Knockout mutants retained higher root and leaf sulfate concentrations, indicating a role in regulation of stored sulfate pools.  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of sulfur utilization|GO:0006792|19154231|IMP  go_process cellular response to sulfur starvation|GO:0010438|19154231|IEP  product ATSDI1 (SULPHUR DEFICIENCY-INDUCED 1); binding  note SULPHUR DEFICIENCY-INDUCED 1 (ATSDI1); FUNCTIONS IN: binding; INVOLVED IN: cellular response to sulfur starvation, regulation of sulfur utilization; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: male sterility MS5 family protein (TAIR:AT1G04770.1); Has 167 Blast hits to 160 proteins in 25 species: Archae - 2; Bacteria - 24; Metazoa - 0; Fungi - 0; Plants - 102; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT5G48850.1p  transcript_id AT5G48850.1  protein_id AT5G48850.1p  transcript_id AT5G48850.1  
At5g48860	chr5:019812599	0.0	C/19812599-19812865,19811651-19811911	AT5G48860.1  CDS  gene_syn K24G6.20, K24G6_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G48860.1p  transcript_id AT5G48860.1  protein_id AT5G48860.1p  transcript_id AT5G48860.1  
At5g48870	chr5:019813407	0.0	W/19813407-19813440,19813557-19813680,19814107-19814179,19814327-19814362	AT5G48870.1  CDS  gene_syn K24G6.21, K24G6_21, SAD1, SUPERSENSITIVE TO ABA AND DROUGHT 1  gene SAD1  function SAD1 encodes a polypeptide similar to multifunctional Sm-like snRNP proteins that are required for mRNA splicing, export, and degradation. Mutation in this gene increases plant sensitivity to drought stress and ABA in seed germination, root growth, and the expression of some stress-responsive genes.  go_component nucleus|GO:0005634||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_process response to water deprivation|GO:0009414|11740939|IMP  go_process response to abscisic acid stimulus|GO:0009737|11740939|IMP  go_function RNA binding|GO:0003723|11740939|ISS  product SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1); RNA binding  note SUPERSENSITIVE TO ABA AND DROUGHT 1 (SAD1); FUNCTIONS IN: RNA binding; INVOLVED IN: response to water deprivation, response to abscisic acid stimulus; LOCATED IN: small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); Has 542 Blast hits to 542 proteins in 163 species: Archae - 167; Bacteria - 0; Metazoa - 127; Fungi - 113; Plants - 67; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT5G48870.1p  transcript_id AT5G48870.1  protein_id AT5G48870.1p  transcript_id AT5G48870.1  
At5g48880	chr5:019816741	0.0	C/19816741-19816775,19816579-19816663,19816371-19816497,19816185-19816283,19816023-19816096,19815835-19815942,19815689-19815766,19815478-19815610,19815301-19815397,19815110-19815233,19814918-19815026,19814752-19814835,19814576-19814667	AT5G48880.1  CDS  gene_syn 3-KETO-ACYL-COA THIOLASE, 3-KETO-ACYL-COENZYME A THIOLASE 5, K24G6.22, K24G6_22, KAT5, PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2, PEROXISOMAL-3-KETO-ACYL-COA THIOLASE 1, PKT1, PKT2  gene PKT2  function Encodes a peroxisomal 3-keto-acyl-CoA thiolase 2 precursor. EC2.3.1.16 thiolases. AT5G48880.1 is named PKT1 and AT5G48880.2 is named PKT2.  go_component peroxisome|GO:0005777|17951448|IDA  go_function catalytic activity|GO:0003824||IEA  go_process fatty acid oxidation|GO:0019395||TAS  go_function acetyl-CoA C-acyltransferase activity|GO:0003988||ISS  product PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2); acetyl-CoA C-acyltransferase/ catalytic  note PEROXISOMAL-3-KETO-ACYL-COA THIOLASE 1 (PKT1); FUNCTIONS IN: catalytic activity, acetyl-CoA C-acyltransferase activity; INVOLVED IN: fatty acid oxidation; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase (InterPro:IPR002155), Thiolase-like (InterPro:IPR016039), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: PKT3 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 3); acetyl-CoA C-acyltransferase (TAIR:AT2G33150.1); Has 15362 Blast hits to 15345 proteins in 1301 species: Archae - 229; Bacteria - 7879; Metazoa - 812; Fungi - 421; Plants - 178; Viruses - 0; Other Eukaryotes - 5843 (source: NCBI BLink).  protein_id AT5G48880.1p  transcript_id AT5G48880.1  protein_id AT5G48880.1p  transcript_id AT5G48880.1  
At5g48880	chr5:019816923	0.0	C/19816923-19817021,19816741-19816805,19816579-19816663,19816371-19816497,19816185-19816283,19816023-19816096,19815835-19815942,19815689-19815766,19815478-19815610,19815301-19815397,19815110-19815233,19814918-19815026,19814752-19814835,19814576-19814667	AT5G48880.2  CDS  gene_syn 3-KETO-ACYL-COA THIOLASE, 3-KETO-ACYL-COENZYME A THIOLASE 5, K24G6.22, K24G6_22, KAT5, PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2, PEROXISOMAL-3-KETO-ACYL-COA THIOLASE 1, PKT1, PKT2  gene PKT2  function Encodes a peroxisomal 3-keto-acyl-CoA thiolase 2 precursor. EC2.3.1.16 thiolases. AT5G48880.1 is named PKT1 and AT5G48880.2 is named PKT2.  go_component peroxisome|GO:0005777|17951448|IDA  go_function catalytic activity|GO:0003824||IEA  go_process fatty acid oxidation|GO:0019395||TAS  go_function acetyl-CoA C-acyltransferase activity|GO:0003988||ISS  product PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2); acetyl-CoA C-acyltransferase/ catalytic  note PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2 (PKT2); FUNCTIONS IN: catalytic activity, acetyl-CoA C-acyltransferase activity; INVOLVED IN: fatty acid oxidation; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase (InterPro:IPR002155), Thiolase-like (InterPro:IPR016039), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: PKT4 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 4); acetyl-CoA C-acyltransferase/ catalytic (TAIR:AT1G04710.1); Has 15364 Blast hits to 15347 proteins in 1301 species: Archae - 229; Bacteria - 7881; Metazoa - 812; Fungi - 421; Plants - 178; Viruses - 0; Other Eukaryotes - 5843 (source: NCBI BLink).  protein_id AT5G48880.2p  transcript_id AT5G48880.2  protein_id AT5G48880.2p  transcript_id AT5G48880.2  
At5g48880	chr5:019816923	0.0	C/19816923-19817021,19816741-19816805,19816579-19816663,19816371-19816497,19816185-19816283,19816023-19816096,19815835-19815942,19815689-19815766,19815478-19815610,19815301-19815397,19815110-19815233,19814918-19815026,19814752-19814835,19814576-19814667	AT5G48880.3  CDS  gene_syn 3-KETO-ACYL-COA THIOLASE, 3-KETO-ACYL-COENZYME A THIOLASE 5, K24G6.22, K24G6_22, KAT5, PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2, PEROXISOMAL-3-KETO-ACYL-COA THIOLASE 1, PKT1, PKT2  gene PKT2  function Encodes a peroxisomal 3-keto-acyl-CoA thiolase 2 precursor. EC2.3.1.16 thiolases. AT5G48880.1 is named PKT1 and AT5G48880.2 is named PKT2.  go_component peroxisome|GO:0005777|17951448|IDA  go_function catalytic activity|GO:0003824||IEA  go_process fatty acid oxidation|GO:0019395||TAS  go_function acetyl-CoA C-acyltransferase activity|GO:0003988||ISS  product PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2); acetyl-CoA C-acyltransferase/ catalytic  note PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2 (PKT2); FUNCTIONS IN: catalytic activity, acetyl-CoA C-acyltransferase activity; INVOLVED IN: fatty acid oxidation; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Thiolase (InterPro:IPR002155), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: PKT4 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 4); acetyl-CoA C-acyltransferase/ catalytic (TAIR:AT1G04710.1); Has 15364 Blast hits to 15347 proteins in 1301 species: Archae - 229; Bacteria - 7881; Metazoa - 812; Fungi - 421; Plants - 178; Viruses - 0; Other Eukaryotes - 5843 (source: NCBI BLink).  protein_id AT5G48880.3p  transcript_id AT5G48880.3  protein_id AT5G48880.3p  transcript_id AT5G48880.3  
At5g48890	chr5:019820353	0.0	W/19820353-19820874	AT5G48890.1  CDS  gene_syn K24G6.23, K24G6_23  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT5G14010.1); Has 366 Blast hits to 364 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 366; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G48890.1p  transcript_id AT5G48890.1  protein_id AT5G48890.1p  transcript_id AT5G48890.1  
At5g48900	chr5:019825240	0.0	W/19825240-19825319,19825692-19825757,19827496-19828138,19828223-19828326,19828406-19828544,19828688-19828909	AT5G48900.1  CDS  gene_syn K19E20.1, K19E20_1  go_component endomembrane system|GO:0012505||IEA  go_function lyase activity|GO:0016829||ISS  go_function pectate lyase activity|GO:0030570||ISS  product pectate lyase family protein  note pectate lyase family protein; FUNCTIONS IN: lyase activity, pectate lyase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: pectate lyase family protein (TAIR:AT3G07010.1); Has 906 Blast hits to 903 proteins in 156 species: Archae - 0; Bacteria - 367; Metazoa - 0; Fungi - 133; Plants - 398; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G48900.1p  transcript_id AT5G48900.1  protein_id AT5G48900.1p  transcript_id AT5G48900.1  
At5g48905	chr5:019831284	0.0	W/19831284-19831335,19831585-19831787	AT5G48905.1  CDS  gene_syn LCR12, Low-molecular-weight cysteine-rich 12  gene LCR12  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR12 (Low-molecular-weight cysteine-rich 12)  note Low-molecular-weight cysteine-rich 12 (LCR12); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); BEST Arabidopsis thaliana protein match is: LCR21 (Low-molecular-weight cysteine-rich 21) (TAIR:AT4G29283.1); Has 31 Blast hits to 31 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G48905.1p  transcript_id AT5G48905.1  protein_id AT5G48905.1p  transcript_id AT5G48905.1  
At5g48910	chr5:019832969	0.0	C/19832969-19834909	AT5G48910.1  CDS  gene_syn K19E20.2, K19E20_2  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G66520.1); Has 13119 Blast hits to 5075 proteins in 152 species: Archae - 0; Bacteria - 4; Metazoa - 51; Fungi - 43; Plants - 12776; Viruses - 0; Other Eukaryotes - 245 (source: NCBI BLink).  protein_id AT5G48910.1p  transcript_id AT5G48910.1  protein_id AT5G48910.1p  transcript_id AT5G48910.1  
At5g48920	chr5:019835405	0.0	W/19835405-19836022	AT5G48920.1  CDS  gene_syn K19E20.3, K19E20_3, TED7, TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7  gene TED7  go_process secondary cell wall biogenesis|GO:0009834|19383897|IGI  go_function molecular_function|GO:0003674||ND  product TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7)  note TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7 (TED7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: secondary cell wall biogenesis; EXPRESSED IN: vessel member; BEST Arabidopsis thaliana protein match is: TED6 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 6) (TAIR:AT1G43790.1); Has 84677 Blast hits to 30384 proteins in 1394 species: Archae - 153; Bacteria - 11649; Metazoa - 31808; Fungi - 10466; Plants - 14952; Viruses - 3042; Other Eukaryotes - 12607 (source: NCBI BLink).  protein_id AT5G48920.1p  transcript_id AT5G48920.1  protein_id AT5G48920.1p  transcript_id AT5G48920.1  
At5g48930	chr5:019837685	0.0	C/19837685-19838092,19836654-19837547	AT5G48930.1  CDS  gene_syn HCT, HYDROXYCINNAMOYL-COA SHIKIMATE/QUINATE HYDROXYCINNAMOYL TRANSFERASE, K19E20.4, K19E20_4  gene HCT  function At5g48930 has been shown to encode for the hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase (HCT) both synthesizing and catabolizing the hydroxycinnamoylesters (coumaroyl/caffeoyl shikimate and quinate) involved in the phenylpropanoid pathway. Influence on the accumulation of flavonoids which in turn inhibit auxin transport and reduce plant growth.  go_component cellular_component|GO:0005575||ND  go_process lignin biosynthetic process|GO:0009809|17237352|IMP  go_process positive regulation of flavonoid biosynthetic process|GO:0009963|17237352|IMP  go_process auxin homeostasis|GO:0010252|17237352|IMP  go_function transferase activity|GO:0016740||ISS  go_function shikimate O-hydroxycinnamoyltransferase activity|GO:0047172|15161961|IMP  go_function quinate O-hydroxycinnamoyltransferase activity|GO:0047205|15161961|IMP  product HCT (HYDROXYCINNAMOYL-COA SHIKIMATE/QUINATE HYDROXYCINNAMOYL TRANSFERASE); quinate O-hydroxycinnamoyltransferase/ shikimate O-hydroxycinnamoyltransferase/ transferase  note HYDROXYCINNAMOYL-COA SHIKIMATE/QUINATE HYDROXYCINNAMOYL TRANSFERASE (HCT); FUNCTIONS IN: shikimate O-hydroxycinnamoyltransferase activity, transferase activity, quinate O-hydroxycinnamoyltransferase activity; INVOLVED IN: auxin homeostasis, lignin biosynthetic process, positive regulation of flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT5G57840.1); Has 1599 Blast hits to 1584 proteins in 162 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 239; Plants - 1357; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G48930.1p  transcript_id AT5G48930.1  protein_id AT5G48930.1p  transcript_id AT5G48930.1  
At5g48940	chr5:019839785	0.0	W/19839785-19842683,19843236-19843744	AT5G48940.1  CDS  gene_syn K19E20.5, K19E20_5  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; EXPRESSED IN: root, cultured cell; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT3G24240.1); Has 168264 Blast hits to 96906 proteins in 2671 species: Archae - 101; Bacteria - 14907; Metazoa - 64564; Fungi - 7222; Plants - 59925; Viruses - 357; Other Eukaryotes - 21188 (source: NCBI BLink).  protein_id AT5G48940.1p  transcript_id AT5G48940.1  protein_id AT5G48940.1p  transcript_id AT5G48940.1  
At5g48945	chr5:019844778	0.0	W/19844778-19844856,19845322-19845518	AT5G48945.1  CDS  gene_syn LCR46, Low-molecular-weight cysteine-rich 46  gene LCR46  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||IEA  product LCR46 (Low-molecular-weight cysteine-rich 46)  note Low-molecular-weight cysteine-rich 46 (LCR46); INVOLVED IN: defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56233.1); Has 18 Blast hits to 18 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G48945.1p  transcript_id AT5G48945.1  protein_id AT5G48945.1p  transcript_id AT5G48945.1  
At5g48950	chr5:019846200	0.0	W/19846200-19846514,19847063-19847131	AT5G48950.2  CDS  gene_syn K19E20.6, K19E20_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function acyl-CoA thioesterase activity|GO:0016291||ISS  go_function hydrolase activity, acting on ester bonds|GO:0016788||ISS  product thioesterase family protein  note thioesterase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Thioesterase superfamily (InterPro:IPR006683), Phenylacetic acid degradation-related protein (InterPro:IPR003736); BEST Arabidopsis thaliana protein match is: thioesterase family protein (TAIR:AT1G48320.1); Has 908 Blast hits to 908 proteins in 316 species: Archae - 0; Bacteria - 678; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink).  protein_id AT5G48950.2p  transcript_id AT5G48950.2  protein_id AT5G48950.2p  transcript_id AT5G48950.2  
At5g48950	chr5:019846200	0.0	W/19846200-19846514,19847132-19847290	AT5G48950.1  CDS  gene_syn K19E20.6, K19E20_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function acyl-CoA thioesterase activity|GO:0016291||ISS  go_function hydrolase activity, acting on ester bonds|GO:0016788||ISS  product thioesterase family protein  note thioesterase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Thioesterase superfamily (InterPro:IPR006683), Phenylacetic acid degradation-related protein (InterPro:IPR003736); BEST Arabidopsis thaliana protein match is: thioesterase family protein (TAIR:AT1G48320.1); Has 1391 Blast hits to 1391 proteins in 459 species: Archae - 0; Bacteria - 1056; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink).  protein_id AT5G48950.1p  transcript_id AT5G48950.1  protein_id AT5G48950.1p  transcript_id AT5G48950.1  
At5g48953	chr5:019848184	0.0	C/19848184-19848250,19847711-19847901	AT5G48953.1  CDS  gene_syn LCR86, Low-molecular-weight cysteine-rich 86  gene LCR86  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR86 (Low-molecular-weight cysteine-rich 86)  note Low-molecular-weight cysteine-rich 86 (LCR86); LOCATED IN: endomembrane system; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G48953.1p  transcript_id AT5G48953.1  protein_id AT5G48953.1p  transcript_id AT5G48953.1  
At5g48960	chr5:019849645	0.0	W/19849645-19850008,19850219-19850313,19850467-19850586,19850665-19850754,19850852-19850967,19851081-19851180,19851383-19851454,19851533-19851580,19851662-19851739,19851815-19851934,19852041-19852146,19852239-19852402,19852510-19852644,19852781-19852911,19853004-19853066,19853162-19853240,19853335-19853382	AT5G48960.1  CDS  gene_syn K19E20.8, K19E20_8  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_process biological_process|GO:0008150||ND  go_function 5 -nucleotidase activity|GO:0008253||ISS  product 5  nucleotidase family protein  note 5  nucleotidase family protein; FUNCTIONS IN: 5 -nucleotidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IG, 5 -nucleotidase (InterPro:IPR008380); BEST Arabidopsis thaliana protein match is: 5  nucleotidase family protein (TAIR:AT1G75210.1); Has 508 Blast hits to 508 proteins in 82 species: Archae - 0; Bacteria - 35; Metazoa - 384; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT5G48960.1p  transcript_id AT5G48960.1  protein_id AT5G48960.1p  transcript_id AT5G48960.1  
At5g48965	chr5:019853991	0.0	W/19853991-19856859	AT5G48965.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 3.7e-47 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At5g48970	chr5:019859234	0.0	C/19859234-19859374,19858925-19859041,19858677-19858788,19858330-19858457,19858054-19858206,19857826-19857975,19857028-19857246	AT5G48970.1  CDS  gene_syn K19E20.10, K19E20_10  go_component mitochondrial inner membrane|GO:0005743||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function binding|GO:0005488||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: mitochondrial substrate carrier family protein (TAIR:AT3G21390.1); Has 21769 Blast hits to 10177 proteins in 363 species: Archae - 0; Bacteria - 0; Metazoa - 10956; Fungi - 6020; Plants - 2852; Viruses - 0; Other Eukaryotes - 1941 (source: NCBI BLink).  protein_id AT5G48970.1p  transcript_id AT5G48970.1  protein_id AT5G48970.1p  transcript_id AT5G48970.1  
At5g48980	chr5:019860724	0.0	W/19860724-19861923	AT5G48980.1  CDS  gene_syn K19E20.11, K19E20_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT5G48990.1); Has 463 Blast hits to 445 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 0; Plants - 432; Viruses - 2; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G48980.1p  transcript_id AT5G48980.1  protein_id AT5G48980.1p  transcript_id AT5G48980.1  
At5g48990	chr5:019862340	0.0	W/19862340-19863458	AT5G48990.1  CDS  gene_syn K19E20.12, K19E20_12  function encodes an F-box protein that interacts with SKP1 and likely to be involved in ubiquitin-mediated protein degradation.  go_component chloroplast|GO:0009507||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11516153|IDA  go_function protein binding|GO:0005515|11516153|IPI  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT5G48980.1); Has 530 Blast hits to 513 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 522; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G48990.1p  transcript_id AT5G48990.1  protein_id AT5G48990.1p  transcript_id AT5G48990.1  
At5g49000	chr5:019864527	0.0	W/19864527-19864852,19864985-19865645	AT5G49000.1  CDS  gene_syn K19E20.13, K19E20_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G39550.1); Has 1294 Blast hits to 1195 proteins in 89 species: Archae - 4; Bacteria - 28; Metazoa - 685; Fungi - 4; Plants - 527; Viruses - 11; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT5G49000.1p  transcript_id AT5G49000.1  protein_id AT5G49000.1p  transcript_id AT5G49000.1  
At5g49000	chr5:019864527	0.0	W/19864527-19865645	AT5G49000.2  CDS  gene_syn K19E20.13, K19E20_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G39550.1); Has 5235 Blast hits to 3308 proteins in 165 species: Archae - 10; Bacteria - 167; Metazoa - 4114; Fungi - 13; Plants - 659; Viruses - 110; Other Eukaryotes - 162 (source: NCBI BLink).  protein_id AT5G49000.2p  transcript_id AT5G49000.2  protein_id AT5G49000.2p  transcript_id AT5G49000.2  
At5g49010	chr5:019866464	0.0	W/19866464-19866631,19866868-19866990,19867119-19867201,19867561-19867670,19867806-19867878,19867969-19868074	AT5G49010.1  CDS  gene_syn K19E20.14, K19E20_14, SLD5, SYNTHETIC LETHALITY WITH DPB11-1 5  gene SLD5  function Similar to the SLD5 component of GINS complex, which in other organism was shown to be involved in the initiation of DNA replication.  go_component GINS complex|GO:0000811|17556508|ISS  go_process DNA replication initiation|GO:0006270|17556508|TAS  go_function molecular_function|GO:0003674||ND  product SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5)  note SYNTHETIC LETHALITY WITH DPB11-1 5 (SLD5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA replication initiation; LOCATED IN: GINS complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GINS complex, Sld5 component (InterPro:IPR008591); Has 235 Blast hits to 234 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 97; Fungi - 84; Plants - 20; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT5G49010.1p  transcript_id AT5G49010.1  protein_id AT5G49010.1p  transcript_id AT5G49010.1  
At5g49010	chr5:019866464	0.0	W/19866464-19866631,19866868-19866990,19867119-19867201,19867561-19867762	AT5G49010.2  CDS  gene_syn K19E20.14, K19E20_14, SLD5, SYNTHETIC LETHALITY WITH DPB11-1 5  gene SLD5  function Similar to the SLD5 component of GINS complex, which in other organism was shown to be involved in the initiation of DNA replication.  go_component GINS complex|GO:0000811|17556508|ISS  go_process DNA replication initiation|GO:0006270|17556508|TAS  go_function molecular_function|GO:0003674||ND  product SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5)  note SYNTHETIC LETHALITY WITH DPB11-1 5 (SLD5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA replication initiation; LOCATED IN: GINS complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GINS complex, Sld5 component (InterPro:IPR008591); Has 231 Blast hits to 230 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 97; Fungi - 84; Plants - 20; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT5G49010.2p  transcript_id AT5G49010.2  protein_id AT5G49010.2p  transcript_id AT5G49010.2  
At5g49015	chr5:019869690	0.0	W/19869690-19869918,19870183-19870208	AT5G49015.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Expressed protein  note Expressed protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 5 Blast hits to 5 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G49015.1p  transcript_id AT5G49015.1  protein_id AT5G49015.1p  transcript_id AT5G49015.1  
At5g49015	chr5:019869690	0.0	W/19869690-19869918,19870183-19870208	AT5G49015.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Expressed protein  note Expressed protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 5 Blast hits to 5 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G49015.2p  transcript_id AT5G49015.2  protein_id AT5G49015.2p  transcript_id AT5G49015.2  
At5g49020	chr5:019871341	0.0	W/19871341-19871532,19871734-19871799,19871953-19872061,19872193-19872339,19872455-19872558,19872668-19872766,19872857-19872926,19873095-19873191,19873267-19873321,19873448-19873531,19873617-19873694,19873842-19873945,19874065-19874237,19874321-19874457,19874612-19874683	AT5G49020.1  CDS  gene_syn ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, ATPRMT4A, K19E20.17, K19E20_17, PRMT4A, PROTEIN ARGININE METHYLTRANSFERASE 4A  gene PRMT4A  function Encodes a type I protein arginine methyltransferase. PRMT4a can catalyze the asymmetric dimethylation of arginines 2,17, and 26 on histone 3 and can also methylate myelin basic protein in vitro. Double mutants lacking PRMT4a and 4b have reduced levels of histone 3 methylated at R17. These double mutants flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts.  go_component nucleus|GO:0005634|18660432|IDA  go_component cytoplasm|GO:0005737|18660432|IDA  go_process regulation of flower development|GO:0009909|18660432|IGI  go_process vegetative to reproductive phase transition|GO:0010228|18660432|IGI  go_process peptidyl-arginine methylation, to asymmetrical-dimethyl arginine|GO:0019919|18660432|IDA  go_process histone H3-R2 methylation|GO:0034970|18660432|IDA  go_process histone H3-R17 methylation|GO:0034971|18660432|IGI  go_process histone H3-R26 methylation|GO:0034972|18660432|IDA  go_function methyltransferase activity|GO:0008168||ISS  go_function histone-arginine N-methyltransferase activity|GO:0008469|18660432|IDA  go_function [myelin basic protein]-arginine N-methyltransferase activity|GO:0016277|18660432|IDA  go_function protein-arginine omega-N monomethyltransferase activity|GO:0035241|18660432|IDA  go_function protein-arginine omega-N asymmetric methyltransferase activity|GO:0035242|18660432|IDA  go_function protein homodimerization activity|GO:0042803|18660432|IPI  go_function protein heterodimerization activity|GO:0046982|18660432|IPI  product PRMT4A (PROTEIN ARGININE METHYLTRANSFERASE 4A); [myelin basic protein]-arginine N-methyltransferase/ histone-arginine N-methyltransferase/ methyltransferase/ protein heterodimerization/ protein homodimerization/ protein-arginine omega-N asymmetric methyltransferase/ protein-arginine omega-N monomethyltransferase  note PROTEIN ARGININE METHYLTRANSFERASE 4A (PRMT4A); FUNCTIONS IN: in 7 functions; INVOLVED IN: in 6 processes; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: B reproductive growth, A vegetative growth; CONTAINS InterPro DOMAIN/s: Methyltransferase small (InterPro:IPR007848); BEST Arabidopsis thaliana protein match is: protein arginine N-methyltransferase family protein (TAIR:AT3G06930.1); Has 1983 Blast hits to 1967 proteins in 394 species: Archae - 40; Bacteria - 364; Metazoa - 984; Fungi - 168; Plants - 159; Viruses - 0; Other Eukaryotes - 268 (source: NCBI BLink).  protein_id AT5G49020.1p  transcript_id AT5G49020.1  protein_id AT5G49020.1p  transcript_id AT5G49020.1  
At5g49020	chr5:019871341	0.0	W/19871341-19871532,19871734-19871799,19871953-19872061,19872199-19872339,19872455-19872558,19872668-19872766,19872857-19872926,19873095-19873191,19873267-19873321,19873448-19873531,19873617-19873694,19873842-19873945,19874065-19874237,19874321-19874457,19874612-19874683	AT5G49020.2  CDS  gene_syn ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, ATPRMT4A, K19E20.17, K19E20_17, PRMT4A, PROTEIN ARGININE METHYLTRANSFERASE 4A  gene PRMT4A  function Encodes a type I protein arginine methyltransferase. PRMT4a can catalyze the asymmetric dimethylation of arginines 2,17, and 26 on histone 3 and can also methylate myelin basic protein in vitro. Double mutants lacking PRMT4a and 4b have reduced levels of histone 3 methylated at R17. These double mutants flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts.  go_component nucleus|GO:0005634|18660432|IDA  go_component cytoplasm|GO:0005737|18660432|IDA  go_process regulation of flower development|GO:0009909|18660432|IGI  go_process vegetative to reproductive phase transition|GO:0010228|18660432|IGI  go_process peptidyl-arginine methylation, to asymmetrical-dimethyl arginine|GO:0019919|18660432|IDA  go_process histone H3-R2 methylation|GO:0034970|18660432|IDA  go_process histone H3-R17 methylation|GO:0034971|18660432|IGI  go_process histone H3-R26 methylation|GO:0034972|18660432|IDA  go_function methyltransferase activity|GO:0008168||ISS  go_function histone-arginine N-methyltransferase activity|GO:0008469|18660432|IDA  go_function [myelin basic protein]-arginine N-methyltransferase activity|GO:0016277|18660432|IDA  go_function protein-arginine omega-N monomethyltransferase activity|GO:0035241|18660432|IDA  go_function protein-arginine omega-N asymmetric methyltransferase activity|GO:0035242|18660432|IDA  go_function protein homodimerization activity|GO:0042803|18660432|IPI  go_function protein heterodimerization activity|GO:0046982|18660432|IPI  product PRMT4A (PROTEIN ARGININE METHYLTRANSFERASE 4A); [myelin basic protein]-arginine N-methyltransferase/ histone-arginine N-methyltransferase/ methyltransferase/ protein heterodimerization/ protein homodimerization/ protein-arginine omega-N asymmetric methyltransferase/ protein-arginine omega-N monomethyltransferase  note PROTEIN ARGININE METHYLTRANSFERASE 4A (PRMT4A); FUNCTIONS IN: in 7 functions; INVOLVED IN: in 6 processes; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: B reproductive growth, A vegetative growth; CONTAINS InterPro DOMAIN/s: Methyltransferase small (InterPro:IPR007848); BEST Arabidopsis thaliana protein match is: protein arginine N-methyltransferase family protein (TAIR:AT3G06930.1); Has 1986 Blast hits to 1970 proteins in 396 species: Archae - 40; Bacteria - 368; Metazoa - 983; Fungi - 168; Plants - 159; Viruses - 0; Other Eukaryotes - 268 (source: NCBI BLink).  protein_id AT5G49020.2p  transcript_id AT5G49020.2  protein_id AT5G49020.2p  transcript_id AT5G49020.2  
At5g49030	chr5:019882211	0.0	C/19882211-19882291,19881452-19881650,19881218-19881372,19881042-19881143,19880861-19880930,19880629-19880741,19880403-19880471,19880181-19880288,19879727-19879871,19879316-19879547,19878933-19879219,19878707-19878843,19878283-19878430,19878059-19878190,19877836-19877964,19877594-19877721,19877344-19877508,19877081-19877206,19876742-19876815,19876365-19876632	AT5G49030.2  CDS  gene_syn K19E20.18, K19E20_18, OVA2, ovule abortion 2  gene OVA2  go_component chloroplast|GO:0009507|18431481|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function isoleucine-tRNA ligase activity|GO:0004822||IEA  go_function ATP binding|GO:0005524||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||ISS  go_process ovule development|GO:0048481|16297076|IMP  go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS  go_function ATP binding|GO:0005524||ISS  product OVA2 (ovule abortion 2); ATP binding / aminoacyl-tRNA ligase/ isoleucine-tRNA ligase/ nucleotide binding  note ovule abortion 2 (OVA2); FUNCTIONS IN: isoleucine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: ovule development, tRNA aminoacylation for protein translation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Isoleucyl-tRNA synthetase (InterPro:IPR018353), Isoleucyl-tRNA synthetase, class Ia (InterPro:IPR002301), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Isoleucyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR015905), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300); BEST Arabidopsis thaliana protein match is: isoleucyl-tRNA synthetase, putative / isoleucine--tRNA ligase, putative (TAIR:AT4G10320.1); Has 30736 Blast hits to 27230 proteins in 1862 species: Archae - 735; Bacteria - 13219; Metazoa - 786; Fungi - 464; Plants - 176; Viruses - 0; Other Eukaryotes - 15356 (source: NCBI BLink).  protein_id AT5G49030.2p  transcript_id AT5G49030.2  protein_id AT5G49030.2p  transcript_id AT5G49030.2  
At5g49030	chr5:019882211	0.0	C/19882211-19882291,19881452-19881650,19881218-19881372,19881042-19881143,19880861-19880930,19880629-19880741,19880403-19880471,19880181-19880288,19879727-19879871,19879316-19879547,19878933-19879219,19878707-19878843,19878283-19878430,19878059-19878190,19877836-19877964,19877594-19877721,19877344-19877508,19877081-19877206,19876742-19876815,19876383-19876632,19875888-19876067,19875091-19875342	AT5G49030.1  CDS  gene_syn K19E20.18, K19E20_18, OVA2, ovule abortion 2  gene OVA2  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function catalytic activity|GO:0003824||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function isoleucine-tRNA ligase activity|GO:0004822||IEA  go_function ATP binding|GO:0005524||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||ISS  go_process ovule development|GO:0048481|16297076|IMP  go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS  go_function ATP binding|GO:0005524||ISS  product OVA2 (ovule abortion 2); ATP binding / aminoacyl-tRNA ligase/ catalytic/ isoleucine-tRNA ligase/ nucleotide binding  note ovule abortion 2 (OVA2); FUNCTIONS IN: nucleotide binding, isoleucine-tRNA ligase activity, aminoacyl-tRNA ligase activity, catalytic activity, ATP binding; INVOLVED IN: ovule development, tRNA aminoacylation for protein translation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Isoleucyl-tRNA synthetase (InterPro:IPR018353), Isoleucyl-tRNA synthetase, class Ia (InterPro:IPR002301), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Isoleucyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR015905), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA glycosylase/AP lyase and isoleucyl tRNA synthetase, zinc finger domain (InterPro:IPR010663), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300); BEST Arabidopsis thaliana protein match is: isoleucyl-tRNA synthetase, putative / isoleucine--tRNA ligase, putative (TAIR:AT4G10320.1); Has 31085 Blast hits to 27559 proteins in 1864 species: Archae - 744; Bacteria - 13242; Metazoa - 788; Fungi - 464; Plants - 176; Viruses - 0; Other Eukaryotes - 15671 (source: NCBI BLink).  protein_id AT5G49030.1p  transcript_id AT5G49030.1  protein_id AT5G49030.1p  transcript_id AT5G49030.1  
At5g49040	chr5:019882676	0.0	C/19882676-19883251	AT5G49040.1  CDS  gene_syn K19E20.19, K19E20_19  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_process lignan biosynthetic process|GO:0009807||ISS  go_function molecular_function|GO:0003674||ND  product disease resistance-responsive protein-related / dirigent protein-related  note disease resistance-responsive protein-related / dirigent protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lignan biosynthetic process, defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: disease resistance response (TAIR:AT1G55210.1); Has 489 Blast hits to 488 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 489; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G49040.1p  transcript_id AT5G49040.1  protein_id AT5G49040.1p  transcript_id AT5G49040.1  
At5g49050	chr5:019883929	0.0	W/19883929-19884381	AT5G49050.1  CDS  gene_syn K19E20.20, K19E20_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729); BEST Arabidopsis thaliana protein match is: universal stress protein (USP) family protein (TAIR:AT2G47710.1); Has 83 Blast hits to 82 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G49050.1p  transcript_id AT5G49050.1  protein_id AT5G49050.1p  transcript_id AT5G49050.1  
At5g49060	chr5:019886764	0.0	W/19886764-19887812,19888121-19888136	AT5G49060.1  CDS  gene_syn K20J1.3, K20J1_3  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Protein of unknown function DUF1977, DnaJ-like (InterPro:IPR015399), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT3G57340.2); Has 16477 Blast hits to 16471 proteins in 1937 species: Archae - 115; Bacteria - 5129; Metazoa - 3595; Fungi - 1505; Plants - 1275; Viruses - 18; Other Eukaryotes - 4840 (source: NCBI BLink).  protein_id AT5G49060.1p  transcript_id AT5G49060.1  protein_id AT5G49060.1p  transcript_id AT5G49060.1  
At5g49070	chr5:019888751	0.0	C/19888751-19890145	AT5G49070.1  CDS  gene_syn 3-KETOACYL-COA SYNTHASE 21, K20J1.4, K20J1_4, KCS21  gene KCS21  function Encodes KCS21, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_function catalytic activity|GO:0003824||IEA  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_process very-long-chain fatty acid metabolic process|GO:0000038|10330468|IDA  go_process cuticle development|GO:0042335|10330468|IDA  go_function acyltransferase activity|GO:0008415||ISS  product KCS21 (3-KETOACYL-COA SYNTHASE 21); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups  note 3-KETOACYL-COA SYNTHASE 21 (KCS21); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: very-long-chain fatty acid metabolic process, cuticle development; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: KCS6 (3-KETOACYL-COA SYNTHASE 6); catalytic/ transferase, transferring acyl groups other than amino-acyl groups (TAIR:AT1G68530.1); Has 3423 Blast hits to 3416 proteins in 891 species: Archae - 0; Bacteria - 1394; Metazoa - 0; Fungi - 16; Plants - 1754; Viruses - 0; Other Eukaryotes - 259 (source: NCBI BLink).  protein_id AT5G49070.1p  transcript_id AT5G49070.1  protein_id AT5G49070.1p  transcript_id AT5G49070.1  
At5g49080	chr5:019890784	0.0	C/19890784-19892809	AT5G49080.1  mRNA_TE_gene  pseudo  gene_syn K20J1.5, K20J1_5  note Transposable element gene, similar to proline-rich extensin-like family protein [Arabidopsis thaliana] (TAIR:AT5G06640.1); similar to ATHRGP1 (ATHRGP1), structural constituent of cell wall [Arabidopsis thaliana] (TAIR:AT3G54590.1); similar to proline-rich extensin-like family protein [Arabidopsis thaliana] (TAIR:AT4G08410.1); similar to Extensin-like re (GB:ABD65126.1); similar to extensin, putative [Brassica oleracea] (GB:ABD65124.1); similar to hydroxyproline-rich glycoprotein precursor (GB:AAA87902.1); contains InterPro domain Extensin-like region; (InterPro:IPR006706)  
At5g49090	chr5:019893714	0.0	C/19893714-19894233	AT5G49090.1  mRNA_TE_gene  pseudo  gene_syn K20J1.6, K20J1_6  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G54955.1); similar to hypothetical protein 23.t00046 [Brassica oleracea] (GB:ABD65629.1); contains domain REVERSE TRANSCRIPTASES (PTHR19446); contains domain gb def: Hypothetical protein At2g15600 (PTHR19446:SF12)  
At5g49100	chr5:019897700	0.0	C/19897700-19898890	AT5G49100.1  CDS  gene_syn K20J1.7, K20J1_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G06868.1); Has 5209 Blast hits to 1266 proteins in 207 species: Archae - 0; Bacteria - 1234; Metazoa - 887; Fungi - 413; Plants - 69; Viruses - 5; Other Eukaryotes - 2601 (source: NCBI BLink).  protein_id AT5G49100.1p  transcript_id AT5G49100.1  protein_id AT5G49100.1p  transcript_id AT5G49100.1  
At5g49110	chr5:019900203	0.0	W/19900203-19901236,19901311-19901392,19901495-19901686,19901804-19901868,19901943-19902102,19902281-19902526,19902609-19902725,19902935-19903126,19903218-19903305,19903553-19904457,19904514-19905051,19905132-19905925	AT5G49110.2  CDS  gene_syn K20J1.8, K20J1_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 2640 Blast hits to 1393 proteins in 183 species: Archae - 0; Bacteria - 1503; Metazoa - 558; Fungi - 149; Plants - 48; Viruses - 28; Other Eukaryotes - 354 (source: NCBI BLink).  protein_id AT5G49110.2p  transcript_id AT5G49110.2  protein_id AT5G49110.2p  transcript_id AT5G49110.2  
At5g49110	chr5:019900203	0.0	W/19900203-19901236,19901311-19901392,19901495-19901686,19901804-19901868,19901943-19902102,19902281-19902526,19902609-19902725,19902935-19903126,19903221-19903305,19903553-19904457,19904514-19905051,19905132-19905925	AT5G49110.1  CDS  gene_syn K20J1.8, K20J1_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 2642 Blast hits to 1395 proteins in 184 species: Archae - 0; Bacteria - 1505; Metazoa - 558; Fungi - 149; Plants - 48; Viruses - 28; Other Eukaryotes - 354 (source: NCBI BLink).  protein_id AT5G49110.1p  transcript_id AT5G49110.1  protein_id AT5G49110.1p  transcript_id AT5G49110.1  
At5g49120	chr5:019909067	0.0	C/19909067-19909332,19908800-19908986	AT5G49120.1  CDS  gene_syn K20J1.9, K20J1_9  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product senescence-associated protein-related  note senescence-associated protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: senescence-associated protein-related (TAIR:AT1G78020.1); Has 8303 Blast hits to 4860 proteins in 69 species: Archae - 0; Bacteria - 6; Metazoa - 51; Fungi - 132; Plants - 282; Viruses - 4; Other Eukaryotes - 7828 (source: NCBI BLink).  protein_id AT5G49120.1p  transcript_id AT5G49120.1  protein_id AT5G49120.1p  transcript_id AT5G49120.1  
At5g49138	chr5:019915868	0.0	C/19915868-19917277	AT5G49138.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT5G49130  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G49138.1  
At5g49130	chr5:019915904	0.0	W/19915904-19915969,19916083-19917525	AT5G49130.1  CDS  gene_syn K20J1.11, K20J1_11  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: drug transporter activity, antiporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G71870.1); Has 5305 Blast hits to 5233 proteins in 1054 species: Archae - 133; Bacteria - 3363; Metazoa - 121; Fungi - 210; Plants - 681; Viruses - 0; Other Eukaryotes - 797 (source: NCBI BLink).  protein_id AT5G49130.1p  transcript_id AT5G49130.1  protein_id AT5G49130.1p  transcript_id AT5G49130.1  
At5g49140	chr5:019922946	0.0	C/19922946-19923415,19921623-19922730,19921211-19921516,19919085-19920143	AT5G49140.1  CDS  gene_syn K20J1.12, K20J1_12  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G11170.1); Has 12027 Blast hits to 9268 proteins in 374 species: Archae - 25; Bacteria - 474; Metazoa - 781; Fungi - 10; Plants - 10405; Viruses - 0; Other Eukaryotes - 332 (source: NCBI BLink).  protein_id AT5G49140.1p  transcript_id AT5G49140.1  protein_id AT5G49140.1p  transcript_id AT5G49140.1  
At5g49150	chr5:019924760	0.0	W/19924760-19924841,19924929-19925267,19925355-19925681,19925768-19925974,19926055-19926110,19926187-19926328,19926404-19926712,19926789-19926913,19927023-19927240,19927345-19927572,19927669-19927898,19927969-19928207,19928285-19928527	AT5G49150.1  CDS  gene_syn ATGEX2, GAMETE EXPRESSED 2, GEX2, K21P3.2, K21P3_2  gene GEX2  function Encodes a transmembrane domain containing protein expressed in sperm cells.  go_component integral to plasma membrane|GO:0005887|16055690|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product GEX2 (GAMETE EXPRESSED 2)  note GAMETE EXPRESSED 2 (GEX2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to plasma membrane; EXPRESSED IN: embryo, sperm cell, seed; EXPRESSED DURING: D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Immunoglobulin-like fold (InterPro:IPR013783), Filamin/ABP280 repeat (InterPro:IPR001298), Immunoglobulin E-set (InterPro:IPR014756), Filamin/ABP280 repeat-like (InterPro:IPR017868); Has 1037 Blast hits to 553 proteins in 149 species: Archae - 2; Bacteria - 859; Metazoa - 42; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).  protein_id AT5G49150.1p  transcript_id AT5G49150.1  protein_id AT5G49150.1p  transcript_id AT5G49150.1  
At5g49152	chr5:019928880	0.0	W/19928880-19929377	AT5G49152.1  ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G49152.1  
At5g49160	chr5:019932501	0.0	W/19932501-19933951,19934036-19935560,19935660-19935824,19935974-19936169,19936250-19936361,19936443-19936590,19936673-19936870,19937002-19937280,19937392-19937553,19937665-19937883,19938037-19938186	AT5G49160.1  CDS  gene_syn DDM2, DECREASED DNA METHYLATION 2, DMT01, DMT1, DNA METHYLTRANSFERASE, DNA METHYLTRANSFERASE 01, DNA METHYLTRANSFERASE 1, MET1, MET2, METHYLTRANSFERASE 1, METHYLTRANSFERASE 2, METHYLTRANSFERASE I, METI  gene MET1  function Encodes a cytosine methyltransferase MET1. Required for silencing of FWA paternal allele in endosperm. Two lines with RNAi constructs directed against DMT1 have reduced agrobacterium-mediated tumor formation.  go_component nucleus|GO:0005634||IEA  go_process genetic imprinting|GO:0006349|16648367|IMP  go_process DNA mediated transformation|GO:0009294|17827277|IMP  go_process negative regulation of flower development|GO:0009910|9576969|IMP  go_process zygote asymmetric cytokinesis in the embryo sac|GO:0010069|16531498|IMP  go_process maintenance of DNA methylation|GO:0010216|16648367|IMP  go_process DNA methylation on cytosine within a CG sequence|GO:0010424|17239600|IMP  go_function methyltransferase activity|GO:0008168|8662558|TAS  product MET1 (METHYLTRANSFERASE 1); methyltransferase  note METHYLTRANSFERASE 1 (MET1); FUNCTIONS IN: methyltransferase activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA (cytosine-5)-methyltransferase 1 (InterPro:IPR017198), C-5 cytosine-specific DNA methylase (InterPro:IPR001525), Bromo adjacent region (InterPro:IPR001025), C-5 cytosine-specific DNA methylase, active site (InterPro:IPR018117); BEST Arabidopsis thaliana protein match is: DNA (cytosine-5-)-methyltransferase, putative (TAIR:AT4G08990.1); Has 4311 Blast hits to 3699 proteins in 801 species: Archae - 141; Bacteria - 2274; Metazoa - 244; Fungi - 121; Plants - 219; Viruses - 75; Other Eukaryotes - 1237 (source: NCBI BLink).  protein_id AT5G49160.1p  transcript_id AT5G49160.1  protein_id AT5G49160.1p  transcript_id AT5G49160.1  
At5g49170	chr5:019939390	0.0	C/19939390-19939482,19938839-19939303	AT5G49170.1  CDS  gene_syn K21P3.4, K21P3_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G06840.1); Has 11 Blast hits to 11 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G49170.1p  transcript_id AT5G49170.1  protein_id AT5G49170.1p  transcript_id AT5G49170.1  
At5g49180	chr5:019942222	0.0	C/19942222-19942876,19941778-19942146,19940783-19941474	AT5G49180.1  CDS  gene_syn K21P3.5, K21P3_5  function Encodes a putative pectin methylesterase. The gene is preferentially expressed in floral buds.  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, developing seed stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT3G06830.1); Has 1387 Blast hits to 1339 proteins in 188 species: Archae - 0; Bacteria - 254; Metazoa - 1; Fungi - 135; Plants - 997; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G49180.1p  transcript_id AT5G49180.1  protein_id AT5G49180.1p  transcript_id AT5G49180.1  
At5g49190	chr5:019947101	0.0	C/19947101-19947189,19946858-19946990,19946618-19946769,19946338-19946530,19946124-19946242,19945803-19946019,19945618-19945713,19945341-19945514,19945030-19945146,19944778-19944944,19944465-19944689,19944035-19944356,19943707-19943951,19943480-19943618,19943369-19943404	AT5G49190.1  CDS  gene_syn ATSUS2, K21P3.6, K21P3_6, SSA, SUCROSE SYNTHASE, SUCROSE SYNTHASE 2, SUCROSE SYNTHASE FROM ARABIDOPSIS, SUS2  gene SUS2  function Encodes a putative sucrose synthase (SUS2). The activity of the enzyme could not be assayed as proved to be insoluble (PMID 17257168). Induced specifically by O(2) deficiency.  go_component membrane|GO:0016020|17432890|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process response to hypoxia|GO:0001666|10567234|IEP  go_process sucrose biosynthetic process|GO:0005986||ISS  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function sucrose synthase activity|GO:0016157||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product SUS2 (SUCROSE SYNTHASE 2); UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups  note SUCROSE SYNTHASE 2 (SUS2); FUNCTIONS IN: UDP-glycosyltransferase activity, sucrose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: sucrose biosynthetic process, response to hypoxia; LOCATED IN: membrane, plant-type cell wall; EXPRESSED IN: fruit, seed, leaf; CONTAINS InterPro DOMAIN/s: Sucrose synthase, plants and cyanobacteria (InterPro:IPR012820), Sucrose synthase (InterPro:IPR000368), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: SUS3 (sucrose synthase 3); UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups (TAIR:AT4G02280.1); Has 4032 Blast hits to 4029 proteins in 847 species: Archae - 173; Bacteria - 2245; Metazoa - 74; Fungi - 56; Plants - 467; Viruses - 0; Other Eukaryotes - 1017 (source: NCBI BLink).  protein_id AT5G49190.1p  transcript_id AT5G49190.1  protein_id AT5G49190.1p  transcript_id AT5G49190.1  
At5g49200	chr5:019947796	0.0	C/19947796-19949055	AT5G49200.1  CDS  gene_syn K21P3.7, K21P3_7  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product WD-40 repeat family protein / zfwd4 protein (ZFWD4)  note WD-40 repeat family protein / zfwd4 protein (ZFWD4); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein / zfwd3 protein (ZFWD3) (TAIR:AT5G40880.1); Has 25041 Blast hits to 14412 proteins in 471 species: Archae - 20; Bacteria - 3252; Metazoa - 10699; Fungi - 5302; Plants - 2300; Viruses - 0; Other Eukaryotes - 3468 (source: NCBI BLink).  protein_id AT5G49200.1p  transcript_id AT5G49200.1  protein_id AT5G49200.1p  transcript_id AT5G49200.1  
At5g49210	chr5:019950093	0.0	W/19950093-19950509,19951294-19951464	AT5G49210.1  CDS  gene_syn K21P3.8, K21P3_8  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 3499 Blast hits to 2108 proteins in 239 species: Archae - 0; Bacteria - 230; Metazoa - 1180; Fungi - 291; Plants - 77; Viruses - 4; Other Eukaryotes - 1717 (source: NCBI BLink).  protein_id AT5G49210.1p  transcript_id AT5G49210.1  protein_id AT5G49210.1p  transcript_id AT5G49210.1  
At5g49210	chr5:019950093	0.0	W/19950093-19950509,19951294-19951464	AT5G49210.2  CDS  gene_syn K21P3.8, K21P3_8  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 3499 Blast hits to 2108 proteins in 239 species: Archae - 0; Bacteria - 230; Metazoa - 1180; Fungi - 291; Plants - 77; Viruses - 4; Other Eukaryotes - 1717 (source: NCBI BLink).  protein_id AT5G49210.2p  transcript_id AT5G49210.2  protein_id AT5G49210.2p  transcript_id AT5G49210.2  
At5g49215	chr5:019953670	0.0	W/19953670-19953675,19953908-19954231,19954605-19954725,19954815-19954989,19955075-19955145,19955228-19955874	AT5G49215.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT3G06770.2); Has 1895 Blast hits to 1893 proteins in 298 species: Archae - 2; Bacteria - 543; Metazoa - 3; Fungi - 523; Plants - 739; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT5G49215.2p  transcript_id AT5G49215.2  protein_id AT5G49215.2p  transcript_id AT5G49215.2  
At5g49215	chr5:019953670	0.0	W/19953670-19953681,19953908-19954231,19954605-19954725,19954815-19954989,19955075-19955145,19955228-19955874	AT5G49215.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT3G06770.2); Has 1885 Blast hits to 1883 proteins in 297 species: Archae - 2; Bacteria - 543; Metazoa - 3; Fungi - 513; Plants - 739; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT5G49215.1p  transcript_id AT5G49215.1  protein_id AT5G49215.1p  transcript_id AT5G49215.1  
At5g49220	chr5:019956627	0.0	W/19956627-19957007,19957234-19957451,19957543-19957768,19957848-19957933,19958044-19958138,19958230-19958453	AT5G49220.1  CDS  gene_syn K21P3.10, K21P3_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16100.1); Has 150 Blast hits to 150 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G49220.1p  transcript_id AT5G49220.1  protein_id AT5G49220.1p  transcript_id AT5G49220.1  
At5g49230	chr5:019960344	0.0	C/19960344-19960422,19960117-19960253,19959565-19959642,19959238-19959473,19959048-19959153	AT5G49230.1  CDS  gene_syn HRB1, HYPERSENSITIVE TO RED AND BLUE, K21P3.11, K21P3_11  gene HRB1  function Identified in a screen for mutations hypersensitive to red and blue light. Mutants have shorter hypocotyls. Encodes a nuclear localized protein with similarity to drought induced proteins. Contains a ZZ zinc finger domain which is thought to mediate protein-protein interactions.May be involved in red and blue light signal transduction.  go_component nucleus|GO:0005634|15705950|IDA  go_process response to water deprivation|GO:0009414||ISS  go_process blue light signaling pathway|GO:0009785|15705950|IMP  go_process red light signaling pathway|GO:0010161|15705950|IMP  go_function protein binding|GO:0005515|15705950|TAS  product HRB1 (HYPERSENSITIVE TO RED AND BLUE); protein binding  note HYPERSENSITIVE TO RED AND BLUE (HRB1); FUNCTIONS IN: protein binding; INVOLVED IN: response to water deprivation, red light signaling pathway, blue light signaling pathway; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Drought induced 19 (InterPro:IPR008598); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G06760.1); Has 125 Blast hits to 125 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G49230.1p  transcript_id AT5G49230.1  protein_id AT5G49230.1p  transcript_id AT5G49230.1  
At5g49240	chr5:019962934	0.0	W/19962934-19963135,19963361-19963513,19963714-19964097,19964212-19964351	AT5G49240.1  CDS  gene_syn APRR4, K21P3.12, K21P3_12, PRR4, PSEUDO-RESPONSE REGULATOR 4  gene APRR4  function member of Response Regulator: Pseudo  go_process two-component signal transduction system (phosphorelay)|GO:0000160||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function two-component response regulator activity|GO:0000156|11574878|ISS  go_function two-component response regulator activity|GO:0000156||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product APRR4 (PSEUDO-RESPONSE REGULATOR 4); transcription factor/ two-component response regulator  note PSEUDO-RESPONSE REGULATOR 4 (APRR4); FUNCTIONS IN: transcription factor activity, two-component response regulator activity; INVOLVED IN: regulation of transcription, DNA-dependent, two-component signal transduction system (phosphorelay), regulation of transcription; CONTAINS InterPro DOMAIN/s: Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), CheY-like (InterPro:IPR011006), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Signal transduction response regulator, receiver region (InterPro:IPR001789), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1); transcription factor/ two-component response regulator (TAIR:AT3G16857.2); Has 6175 Blast hits to 6160 proteins in 963 species: Archae - 4; Bacteria - 4182; Metazoa - 2; Fungi - 7; Plants - 872; Viruses - 0; Other Eukaryotes - 1108 (source: NCBI BLink).  protein_id AT5G49240.1p  transcript_id AT5G49240.1  protein_id AT5G49240.1p  transcript_id AT5G49240.1  
At5g49250	chr5:019965343	0.0	W/19965343-19965945	AT5G49250.1  CDS  gene_syn K21P3.13, K21P3_13  go_component beta-galactosidase complex|GO:0009341||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  product beta-galactosidase  note beta-galactosidase; FUNCTIONS IN: beta-galactosidase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: beta-galactosidase complex; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944); BEST Arabidopsis thaliana protein match is: beta-galactosidase (TAIR:AT4G29200.1); Has 9 Blast hits to 9 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G49250.1p  transcript_id AT5G49250.1  protein_id AT5G49250.1p  transcript_id AT5G49250.1  
At5g49260	chr5:019966799	0.0	W/19966799-19967311,19967408-19967527	AT5G49260.1  CDS  gene_syn K21P3.14, K21P3_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sepal; EXPRESSED DURING: petal differentiation and expansion stage; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G49260.1p  transcript_id AT5G49260.1  protein_id AT5G49260.1p  transcript_id AT5G49260.1  
At5g49270	chr5:019973843	0.0	C/19973843-19974398,19972021-19973456	AT5G49270.1  CDS  gene_syn COBL9, COBRA-LIKE 9, DEFORMED ROOT HAIRS 9, DER9, K21P3.15, K21P3_15, MRH4, MUTANT ROOT HAIR 4, SHAVEN 2, SHV2  gene SHV2  function Involved in successfully establishing tip growth in root hairs.  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12376623|TAS  go_component anchored to membrane|GO:0031225|12805597|TAS  go_process cell tip growth|GO:0009932|11041890|IMP  go_process root epidermal cell differentiation|GO:0010053|11041890|IMP  go_process root hair cell differentiation|GO:0048765|16367956|IMP  product SHV2 (SHAVEN 2)  note SHAVEN 2 (SHV2); INVOLVED IN: root epidermal cell differentiation, root hair cell differentiation, cell tip growth; LOCATED IN: anchored to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918); BEST Arabidopsis thaliana protein match is: COBL7 (COBRA-LIKE 7) (TAIR:AT4G16120.1); Has 246 Blast hits to 242 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 246; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G49270.1p  transcript_id AT5G49270.1  protein_id AT5G49270.1p  transcript_id AT5G49270.1  
At5g49280	chr5:019976842	0.0	C/19976842-19977330	AT5G49280.1  CDS  gene_syn K21P3.16, K21P3_16  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 20615 Blast hits to 10676 proteins in 583 species: Archae - 26; Bacteria - 1506; Metazoa - 8293; Fungi - 2581; Plants - 5274; Viruses - 570; Other Eukaryotes - 2365 (source: NCBI BLink).  protein_id AT5G49280.1p  transcript_id AT5G49280.1  protein_id AT5G49280.1p  transcript_id AT5G49280.1  
At5g49290	chr5:019980195	0.0	W/19980195-19980531,19980818-19980973,19981117-19981191,19981377-19981451,19981786-19983869	AT5G49290.1  CDS  gene_syn K21P3.17, K21P3_17  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210); BEST Arabidopsis thaliana protein match is: AtRLP14 (Receptor Like Protein 14); protein binding (TAIR:AT1G74180.1); Has 73199 Blast hits to 21267 proteins in 827 species: Archae - 54; Bacteria - 6005; Metazoa - 23725; Fungi - 921; Plants - 36760; Viruses - 57; Other Eukaryotes - 5677 (source: NCBI BLink).  protein_id AT5G49290.1p  transcript_id AT5G49290.1  protein_id AT5G49290.1p  transcript_id AT5G49290.1  
At5g49300	chr5:019985455	0.0	C/19985455-19985475,19985211-19985360,19984849-19985097	AT5G49300.1  CDS  gene_syn K21P3.18, K21P3_18  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product zinc finger (GATA type) family protein  note zinc finger (GATA type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: zinc finger (GATA type) family protein (TAIR:AT3G06740.1); Has 816 Blast hits to 801 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 346; Plants - 395; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT5G49300.1p  transcript_id AT5G49300.1  protein_id AT5G49300.1p  transcript_id AT5G49300.1  
At5g49301	chr5:019986786	0.0	C/19986786-19987570	AT5G49301.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G49310; importin alpha-1 subunit, putative  
At5g49310	chr5:019994310	0.0	C/19994310-19994516,19994090-19994183,19993897-19993988,19993693-19993824,19993426-19993611,19993193-19993356,19993028-19993106,19992679-19992807,19992447-19992574,19992016-19992364	AT5G49310.1  CDS  gene_syn IMPA-5, IMPORTIN ALPHA ISOFORM 5, K21P3.21, K21P3_21  gene IMPA-5  function Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.  go_component nucleus|GO:0005634||IEA  go_component nuclear pore|GO:0005643||IEA  go_component cytoplasm|GO:0005737||IEA  go_process protein import into nucleus|GO:0006606||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function binding|GO:0005488||IEA  go_function protein transporter activity|GO:0008565||IEA  go_process intracellular protein transport|GO:0006886||ISS  go_function protein transporter activity|GO:0008565||ISS  product IMPA-5 (IMPORTIN ALPHA ISOFORM 5); binding / protein transporter  note IMPORTIN ALPHA ISOFORM 5 (IMPA-5); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Importin-alpha-like, importin-beta-binding region (InterPro:IPR002652), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: IMPA-1 (IMPORTIN ALPHA ISOFORM 1); binding / protein transporter (TAIR:AT3G06720.2); Has 2869 Blast hits to 2131 proteins in 216 species: Archae - 0; Bacteria - 3; Metazoa - 1513; Fungi - 398; Plants - 480; Viruses - 0; Other Eukaryotes - 475 (source: NCBI BLink).  protein_id AT5G49310.1p  transcript_id AT5G49310.1  protein_id AT5G49310.1p  transcript_id AT5G49310.1  
At5g49320	chr5:019996050	0.0	C/19996050-19996214,19995638-19995864,19995083-19995464	AT5G49320.1  CDS  gene_syn K21P3.22, K21P3_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); Has 40 Blast hits to 40 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G49320.1p  transcript_id AT5G49320.1  protein_id AT5G49320.1p  transcript_id AT5G49320.1  
At5g49330	chr5:020001161	0.0	C/20001161-20001293,20000799-20000928,19999147-19999912	AT5G49330.1  CDS  gene_syn AtMYB111, K21P3.23, K21P3_23, myb domain protein 111  gene AtMYB111  function Member of the R2R3 factor gene family.  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11597504|ISS  product AtMYB111 (myb domain protein 111); DNA binding / transcription factor  note myb domain protein 111 (AtMYB111); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB12 (MYB DOMAIN PROTEIN 12); DNA binding / transcription activator/ transcription factor (TAIR:AT2G47460.1); Has 6066 Blast hits to 5684 proteins in 347 species: Archae - 0; Bacteria - 0; Metazoa - 595; Fungi - 284; Plants - 3767; Viruses - 3; Other Eukaryotes - 1417 (source: NCBI BLink).  protein_id AT5G49330.1p  transcript_id AT5G49330.1  protein_id AT5G49330.1p  transcript_id AT5G49330.1  
At5g49334	chr5:020003968	0.0	C/20003968-20004102	AT5G49334.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G49334.1p  transcript_id AT5G49334.1  protein_id AT5G49334.1p  transcript_id AT5G49334.1  
At5g49340	chr5:020008578	0.0	C/20008578-20009038,20008292-20008487,20008020-20008216,20007787-20007945,20007348-20007708	AT5G49340.1  CDS  gene_syn K21P3.1, K21P3_1  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06700.1); Has 732 Blast hits to 720 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 21; Fungi - 0; Plants - 710; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G49340.1p  transcript_id AT5G49340.1  protein_id AT5G49340.1p  transcript_id AT5G49340.1  
At5g49350	chr5:020011017	0.0	C/20011017-20011095,20010434-20010930,20010030-20010255,20009834-20009940	AT5G49350.1  CDS  gene_syn K7J8.2, K7J8_2  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56320.1); Has 209544 Blast hits to 42664 proteins in 1916 species: Archae - 429; Bacteria - 59801; Metazoa - 72679; Fungi - 13723; Plants - 18040; Viruses - 2983; Other Eukaryotes - 41889 (source: NCBI BLink).  protein_id AT5G49350.1p  transcript_id AT5G49350.1  protein_id AT5G49350.1p  transcript_id AT5G49350.1  
At5g49360	chr5:020016240	0.0	C/20016240-20016659,20015384-20015665,20013901-20014070,20013718-20013815,20012867-20013625,20012179-20012774	AT5G49360.1  CDS  gene_syn ATBXL1, BETA-XYLOSIDASE 1, BXL1, K7J8.3, K7J8_3  gene BXL1  function encodes a beta-xylosidase located in the extracellular matrix. Gene is expressed specifically in tissues undergoing secondary wall thickening. This is a member of glycosyl hydrolase family 3 and has six other closely related members.  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BXL1 (BETA-XYLOSIDASE 1); hydrolase, hydrolyzing O-glycosyl compounds  note BETA-XYLOSIDASE 1 (BXL1); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: apoplast, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: BXL2 (BETA-XYLOSIDASE 2); hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G02640.1); Has 5274 Blast hits to 4671 proteins in 699 species: Archae - 16; Bacteria - 2614; Metazoa - 9; Fungi - 922; Plants - 293; Viruses - 0; Other Eukaryotes - 1420 (source: NCBI BLink).  protein_id AT5G49360.1p  transcript_id AT5G49360.1  protein_id AT5G49360.1p  transcript_id AT5G49360.1  
At5g49370	chr5:020023714	0.0	W/20023714-20023746,20024089-20024169,20024261-20024360,20024442-20024530	AT5G49370.1  CDS  gene_syn K7J8.4, K7J8_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: binding (TAIR:AT3G06670.1); Has 302 Blast hits to 302 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 191; Fungi - 68; Plants - 33; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G49370.1p  transcript_id AT5G49370.1  protein_id AT5G49370.1p  transcript_id AT5G49370.1  
At5g49380	chr5:020025565	0.0	W/20025565-20025651,20025788-20025887,20025974-20026051,20026329-20026396,20026574-20026642,20026730-20026807,20026902-20027078	AT5G49380.1  CDS  gene_syn K7J8.5, K7J8_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF625 (InterPro:IPR006887); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT3G06670.1); Has 367 Blast hits to 367 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 206; Fungi - 89; Plants - 34; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT5G49380.1p  transcript_id AT5G49380.1  protein_id AT5G49380.1p  transcript_id AT5G49380.1  
At5g49390	chr5:020027634	0.0	W/20027634-20027665,20027784-20027874,20027993-20028106,20028374-20028579,20028682-20028790,20028957-20029088,20029171-20029275,20029358-20029824,20029916-20030060	AT5G49390.1  CDS  gene_syn K7J8.6, K7J8_6  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: binding (TAIR:AT3G06670.1); Has 1881 Blast hits to 1133 proteins in 226 species: Archae - 0; Bacteria - 208; Metazoa - 616; Fungi - 422; Plants - 77; Viruses - 24; Other Eukaryotes - 534 (source: NCBI BLink).  protein_id AT5G49390.1p  transcript_id AT5G49390.1  protein_id AT5G49390.1p  transcript_id AT5G49390.1  
At5g49400	chr5:020031154	0.0	W/20031154-20031981	AT5G49400.1  CDS  gene_syn K7J8.7, K7J8_7  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc knuckle (CCHC-type) family protein  note zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); Has 43698 Blast hits to 18294 proteins in 781 species: Archae - 17; Bacteria - 11089; Metazoa - 18686; Fungi - 3467; Plants - 1562; Viruses - 321; Other Eukaryotes - 8556 (source: NCBI BLink).  protein_id AT5G49400.1p  transcript_id AT5G49400.1  protein_id AT5G49400.1p  transcript_id AT5G49400.1  
At5g49410	chr5:020032901	0.0	W/20032901-20033113,20033527-20033751	AT5G49410.1  CDS  gene_syn K7J8.8, K7J8_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G73940.1); Has 35 Blast hits to 35 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G49410.1p  transcript_id AT5G49410.1  protein_id AT5G49410.1p  transcript_id AT5G49410.1  
At5g49410	chr5:020032901	0.0	W/20032901-20033113,20033527-20033751	AT5G49410.2  CDS  gene_syn K7J8.8, K7J8_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G73940.1); Has 35 Blast hits to 35 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G49410.2p  transcript_id AT5G49410.2  protein_id AT5G49410.2p  transcript_id AT5G49410.2  
At5g49420	chr5:020035166	0.0	C/20035166-20036170	AT5G49420.1  CDS  gene_syn K7J8.9, K7J8_9  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product MADS-box protein (AGL84)  note MADS-box protein (AGL84); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: MADS-box protein (AGL73) (TAIR:AT5G38620.1); Has 436 Blast hits to 436 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 2; Plants - 429; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G49420.1p  transcript_id AT5G49420.1  protein_id AT5G49420.1p  transcript_id AT5G49420.1  
At5g49430	chr5:020045105	0.0	C/20045105-20045454,20044755-20044915,20044301-20044540,20044078-20044187,20043912-20043989,20043721-20043827,20043277-20043368,20043070-20043194,20042848-20042951,20042688-20042765,20042509-20042587,20042237-20042405,20042068-20042138,20041617-20041697,20041467-20041537,20041293-20041389,20040925-20040984,20040787-20040841,20040294-20040691,20038545-20040221,20037878-20038453,20037612-20037670,20037338-20037533	AT5G49430.1  CDS  gene_syn K7J8.10, K7J8_10  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: nucleotide binding (TAIR:AT2G47410.1); Has 47246 Blast hits to 20919 proteins in 637 species: Archae - 38; Bacteria - 5384; Metazoa - 22453; Fungi - 8728; Plants - 4068; Viruses - 9; Other Eukaryotes - 6566 (source: NCBI BLink).  protein_id AT5G49430.1p  transcript_id AT5G49430.1  protein_id AT5G49430.1p  transcript_id AT5G49430.1  
At5g49435	chr5:020046823	0.0	W/20046823-20046894	AT5G49435.1  tRNA  gene_syn 67817.TRNA-HIS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-His (anticodon: GTG)  transcript_id AT5G49435.1  
At5g49440	chr5:020048918	0.0	W/20048918-20049463	AT5G49440.1  CDS  gene_syn K7J8.12, K7J8_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, inflorescence meristem, root; Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G49440.1p  transcript_id AT5G49440.1  protein_id AT5G49440.1p  transcript_id AT5G49440.1  
At5g49448	chr5:020052057	0.0	W/20052057-20052134	AT5G49448.1  CDS  gene_syn CPuORF4, Conserved peptide upstream open reading frame 4  gene CPuORF4  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF4 represents a conserved upstream opening reading frame relative to major ORF AT5G49450.1  go_component endomembrane system|GO:0012505||IEA  product CPuORF4 (Conserved peptide upstream open reading frame 4)  note Conserved peptide upstream open reading frame 4 (CPuORF4); LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G49448.1p  transcript_id AT5G49448.1  protein_id AT5G49448.1p  transcript_id AT5G49448.1  
At5g49450	chr5:020052145	0.0	W/20052145-20052582	AT5G49450.1  CDS  gene_syn Arabidopsis thaliana basic leucine-zipper 1, AtbZIP1, K7J8.13, K7J8_13  gene AtbZIP1  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process anther dehiscence|GO:0009901|18502975|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function protein heterodimerization activity|GO:0046982|16709202|IPI  product AtbZIP1 (Arabidopsis thaliana basic leucine-zipper 1); DNA binding / protein heterodimerization/ transcription factor  note Arabidopsis thaliana basic leucine-zipper 1 (AtbZIP1); FUNCTIONS IN: transcription factor activity, protein heterodimerization activity, DNA binding; INVOLVED IN: anther dehiscence, regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: male gametophyte, anther, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: GBF6 (G-BOX BINDING FACTOR 6); DNA binding / protein heterodimerization/ transcription factor (TAIR:AT4G34590.1); Has 451 Blast hits to 451 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 21; Fungi - 0; Plants - 425; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G49450.1p  transcript_id AT5G49450.1  protein_id AT5G49450.1p  transcript_id AT5G49450.1  
At5g49460	chr5:020055048	0.0	W/20055048-20055147,20055227-20055329,20055413-20055478,20055568-20055691,20055768-20055902,20055992-20056052,20056138-20056214,20056350-20056505,20056597-20056725,20056806-20056938,20057088-20057215,20057327-20057432,20057519-20057595,20057680-20057750,20057835-20058195	AT5G49460.1  CDS  gene_syn ACLB-2, ATP CITRATE LYASE SUBUNIT B 2, K7J8.14, K7J8_14  gene ACLB-2  function One of the two genes encoding subunit B of the cytosolic enzyme ATP Citrate Lyase (ACL)  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytosol|GO:0005829|12376641|IDA  go_component citrate lyase complex|GO:0009346|12376641|IDA  go_process acetyl-CoA biosynthetic process|GO:0006085|12376641|TAS  go_function ATP citrate synthase activity|GO:0003878|12376641|IDA  product ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2); ATP citrate synthase  note ATP CITRATE LYASE SUBUNIT B 2 (ACLB-2); FUNCTIONS IN: ATP citrate synthase activity; INVOLVED IN: acetyl-CoA biosynthetic process; LOCATED IN: cytosol, citrate lyase complex, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Succinyl-CoA synthetase, beta subunit, conserved site (InterPro:IPR017866), Citrate synthase-like, small alpha subdomain (InterPro:IPR016143), Succinyl-CoA ligase, alpha subunit (InterPro:IPR005810), ATP-citrate lyase/succinyl-CoA ligase (InterPro:IPR005811), NAD(P)-binding (InterPro:IPR016040), Citrate synthase-like, core (InterPro:IPR016141), ATP-citrate lyase/succinyl-CoA ligase, active site (InterPro:IPR017440), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: ACLB-1; ATP citrate synthase (TAIR:AT3G06650.1); Has 5915 Blast hits to 5912 proteins in 1234 species: Archae - 160; Bacteria - 2294; Metazoa - 498; Fungi - 184; Plants - 84; Viruses - 0; Other Eukaryotes - 2695 (source: NCBI BLink).  protein_id AT5G49460.1p  transcript_id AT5G49460.1  protein_id AT5G49460.1p  transcript_id AT5G49460.1  
At5g49465	chr5:020059842	0.0	C/20059842-20062191	AT5G49465.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 5.0e-21 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)  
At5g49470	chr5:020063616	0.0	W/20063616-20063989,20064110-20064563,20064645-20065305,20065441-20065481,20065569-20065637,20065901-20066178,20066281-20066473,20066681-20066749,20066846-20066895,20066983-20067064,20067448-20067542,20068182-20068311	AT5G49470.2  CDS  gene_syn K7J8.16, K7J8_16  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: signal transduction, protein amino acid phosphorylation, regulation of transcription, DNA-dependent; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: PAS fold (InterPro:IPR013767), Serine/threonine protein kinase (InterPro:IPR002290), PAS (InterPro:IPR000014), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G67890.1); Has 87722 Blast hits to 80159 proteins in 2080 species: Archae - 181; Bacteria - 7959; Metazoa - 39072; Fungi - 6285; Plants - 18908; Viruses - 422; Other Eukaryotes - 14895 (source: NCBI BLink).  protein_id AT5G49470.2p  transcript_id AT5G49470.2  protein_id AT5G49470.2p  transcript_id AT5G49470.2  
At5g49470	chr5:020064669	0.0	W/20064669-20065305,20065441-20065481,20065569-20065637,20065901-20066001,20066100-20066178,20066375-20066473,20066681-20066749,20066846-20066895,20066983-20067064,20067448-20067542,20068182-20068311	AT5G49470.1  CDS  gene_syn K7J8.16, K7J8_16  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G67890.1); Has 90996 Blast hits to 89707 proteins in 3133 species: Archae - 51; Bacteria - 7507; Metazoa - 40476; Fungi - 7540; Plants - 18821; Viruses - 477; Other Eukaryotes - 16124 (source: NCBI BLink).  protein_id AT5G49470.1p  transcript_id AT5G49470.1  protein_id AT5G49470.1p  transcript_id AT5G49470.1  
At5g49480	chr5:020070812	0.0	W/20070812-20071294	AT5G49480.1  CDS  gene_syn ATCP1, Ca2+-binding protein 1, K6M13.2, K6M13_2  gene ATCP1  function AtCP1 encodes a novel Ca2+-binding protein, which shares sequence similarities with calmodulins. The expression of AtCP1 is induced by NaCl.  go_component cytosol|GO:0005829|9678579|IDA  go_process hyperosmotic salinity response|GO:0042538|9678579|IEP  go_function calcium ion binding|GO:0005509|9678579|IDA  go_function calcium ion binding|GO:0005509||ISS  product ATCP1 (Ca2+-binding protein 1); calcium ion binding  note Ca2+-binding protein 1 (ATCP1); FUNCTIONS IN: calcium ion binding; INVOLVED IN: hyperosmotic salinity response; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: CAM1 (CALMODULIN 1); calcium ion binding (TAIR:AT5G37780.1); Has 6591 Blast hits to 6281 proteins in 969 species: Archae - 0; Bacteria - 25; Metazoa - 2805; Fungi - 1364; Plants - 1484; Viruses - 0; Other Eukaryotes - 913 (source: NCBI BLink).  protein_id AT5G49480.1p  transcript_id AT5G49480.1  protein_id AT5G49480.1p  transcript_id AT5G49480.1  
At5g49490	chr5:020075328	0.0	W/20075328-20076185	AT5G49490.1  CDS  gene_syn AGAMOUS-LIKE 83, AGL83, K6M13.3, K6M13_3  gene AGL83  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL83 (AGAMOUS-LIKE 83); DNA binding / transcription factor  note AGAMOUS-LIKE 83 (AGL83); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: MADS-box protein (AGL84) (TAIR:AT5G49420.1); Has 309 Blast hits to 309 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 6; Plants - 299; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G49490.1p  transcript_id AT5G49490.1  protein_id AT5G49490.1p  transcript_id AT5G49490.1  
At5g49500	chr5:020079976	0.0	C/20079976-20080206,20079774-20079878,20079531-20079685,20078843-20078993,20078611-20078759,20078400-20078500,20078173-20078330,20077968-20078082,20077556-20077884	AT5G49500.1  CDS  gene_syn K6M13.4, K6M13_4  go_component signal recognition particle|GO:0048500||IEA  go_process SRP-dependent cotranslational protein targeting to membrane|GO:0006614||IEA  go_function GTP binding|GO:0005525||IEA  go_function 7S RNA binding|GO:0008312||IEA  go_component signal recognition particle, endoplasmic reticulum targeting|GO:0005786||ISS  go_process SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition|GO:0006617||ISS  go_function mRNA binding|GO:0003729||ISS  go_function GTP binding|GO:0005525||ISS  go_function 7S RNA binding|GO:0008312||ISS  product signal recognition particle 54 kDa protein 2 / SRP54 (SRP-54B)  note signal recognition particle 54 kDa protein 2 / SRP54 (SRP-54B); FUNCTIONS IN: 7S RNA binding, mRNA binding, GTP binding; INVOLVED IN: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition, SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: signal recognition particle, signal recognition particle, endoplasmic reticulum targeting; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Signal recognition particle, SRP54 subunit, helical bundle (InterPro:IPR013822), Signal recognition particle, SRP54 subunit, M-domain (InterPro:IPR004125), Signal recognition particle, SRP54 subunit (InterPro:IPR006325), Signal recognition particle, SRP54 subunit, GTPase (InterPro:IPR000897); BEST Arabidopsis thaliana protein match is: signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C) (TAIR:AT1G48900.1); Has 11534 Blast hits to 11529 proteins in 1579 species: Archae - 312; Bacteria - 5455; Metazoa - 259; Fungi - 192; Plants - 147; Viruses - 0; Other Eukaryotes - 5169 (source: NCBI BLink).  protein_id AT5G49500.1p  transcript_id AT5G49500.1  protein_id AT5G49500.1p  transcript_id AT5G49500.1  
At5g49510	chr5:020080729	0.0	W/20080729-20080874,20081041-20081098,20081181-20081252,20081848-20081967,20082056-20082157,20082367-20082456	AT5G49510.1  CDS  gene_syn K6M13.5, K6M13_5, PDF3, PREFOLDIN 3  gene PDF3  go_component prefoldin complex|GO:0016272||IEA  go_process protein folding|GO:0006457||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component prefoldin complex|GO:0016272||ISS  go_process protein folding|GO:0006457||ISS  product PDF3 (PREFOLDIN 3); unfolded protein binding  note PREFOLDIN 3 (PDF3); FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding; LOCATED IN: prefoldin complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin alpha-like (InterPro:IPR004127), Prefoldin (InterPro:IPR009053), Prefoldin, subunit 3 (InterPro:IPR016655); Has 310 Blast hits to 310 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 138; Fungi - 87; Plants - 23; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT5G49510.1p  transcript_id AT5G49510.1  protein_id AT5G49510.1p  transcript_id AT5G49510.1  
At5g49510	chr5:020080729	0.0	W/20080729-20080874,20081041-20081098,20081181-20081252,20081848-20081967,20082056-20082157,20082367-20082456	AT5G49510.2  CDS  gene_syn K6M13.5, K6M13_5, PDF3, PREFOLDIN 3  gene PDF3  go_component prefoldin complex|GO:0016272||IEA  go_process protein folding|GO:0006457||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component prefoldin complex|GO:0016272||ISS  go_process protein folding|GO:0006457||ISS  product PDF3 (PREFOLDIN 3); unfolded protein binding  note PREFOLDIN 3 (PDF3); FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding; LOCATED IN: prefoldin complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin alpha-like (InterPro:IPR004127), Prefoldin (InterPro:IPR009053), Prefoldin, subunit 3 (InterPro:IPR016655); Has 310 Blast hits to 310 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 138; Fungi - 87; Plants - 23; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT5G49510.2p  transcript_id AT5G49510.2  protein_id AT5G49510.2p  transcript_id AT5G49510.2  
At5g49520	chr5:020090890	0.0	W/20090890-20091467,20091548-20091691,20092390-20092867	AT5G49520.1  CDS  gene_syn AtWRKY48, K6M13.6, K6M13_6, WRKY48  gene WRKY48  function member of WRKY Transcription Factor; Group II-c  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_process response to chitin|GO:0010200|17722694|IEP  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY48; transcription factor  note WRKY48; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to chitin, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY71; transcription factor (TAIR:AT1G29860.1); Has 4001 Blast hits to 3360 proteins in 212 species: Archae - 0; Bacteria - 22; Metazoa - 480; Fungi - 141; Plants - 2044; Viruses - 0; Other Eukaryotes - 1314 (source: NCBI BLink).  protein_id AT5G49520.1p  transcript_id AT5G49520.1  protein_id AT5G49520.1p  transcript_id AT5G49520.1  
At5g49525	chr5:020097132	0.0	C/20097132-20097374	AT5G49525.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26790.1); Has 9 Blast hits to 9 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G49525.1p  transcript_id AT5G49525.1  protein_id AT5G49525.1p  transcript_id AT5G49525.1  
At5g49530	chr5:020100934	0.0	W/20100934-20101338,20101429-20101497,20101574-20101675,20101749-20101817,20101908-20102030,20102139-20102189,20102297-20102403,20102506-20102577,20102726-20102777,20102917-20103545,20103675-20103884,20103975-20104095,20104183-20104242	AT5G49530.1  CDS  gene_syn K6M13.8, K6M13_8  go_component nucleus|GO:0005634||IEA  go_process transcription|GO:0006350||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  product SIN-like family protein  note SIN-like family protein; FUNCTIONS IN: DNA-directed RNA polymerase activity; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sin-like protein conserved region (InterPro:IPR006886); Has 321 Blast hits to 314 proteins in 107 species: Archae - 0; Bacteria - 13; Metazoa - 145; Fungi - 56; Plants - 26; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).  protein_id AT5G49530.1p  transcript_id AT5G49530.1  protein_id AT5G49530.1p  transcript_id AT5G49530.1  
At5g49540	chr5:020105512	0.0	C/20105512-20105609,20105218-20105413,20105088-20105107,20104804-20104834	AT5G49540.1  CDS  gene_syn K6M13.9, K6M13_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF786 (InterPro:IPR008504); Has 172 Blast hits to 172 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 102; Fungi - 27; Plants - 15; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT5G49540.1p  transcript_id AT5G49540.1  protein_id AT5G49540.1p  transcript_id AT5G49540.1  
At5g49550	chr5:020107073	0.0	C/20107073-20107156,20106702-20107001	AT5G49550.1  CDS  gene_syn K6M13.19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 122 Blast hits to 122 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 101; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G49550.1p  transcript_id AT5G49550.1  protein_id AT5G49550.1p  transcript_id AT5G49550.1  
At5g49555	chr5:020110367	0.0	C/20110367-20110602,20110125-20110286,20109867-20110046,20109717-20109774,20109565-20109615,20109408-20109490,20109093-20109180,20108930-20108971,20108781-20108855,20108608-20108676,20108352-20108467,20108136-20108248,20107994-20108073,20107780-20107900,20107623-20107689,20107411-20107540	AT5G49555.1  CDS  go_function oxidoreductase activity|GO:0016491||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  product amine oxidase-related  note amine oxidase-related; FUNCTIONS IN: oxidoreductase activity; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD dependent oxidoreductase (InterPro:IPR006076); BEST Arabidopsis thaliana protein match is: CRTISO (CAROTENOID ISOMERASE); carotenoid isomerase (TAIR:AT1G06820.1); Has 5195 Blast hits to 5140 proteins in 685 species: Archae - 86; Bacteria - 2216; Metazoa - 109; Fungi - 51; Plants - 87; Viruses - 0; Other Eukaryotes - 2646 (source: NCBI BLink).  protein_id AT5G49555.1p  transcript_id AT5G49555.1  protein_id AT5G49555.1p  transcript_id AT5G49555.1  
At5g49560	chr5:020110961	0.0	C/20110961-20111785	AT5G49560.1  CDS  gene_syn K6M13.11, K6M13_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50850.1); Has 869 Blast hits to 869 proteins in 147 species: Archae - 0; Bacteria - 25; Metazoa - 384; Fungi - 266; Plants - 132; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT5G49560.1p  transcript_id AT5G49560.1  protein_id AT5G49560.1p  transcript_id AT5G49560.1  
At5g49570	chr5:020116048	0.0	C/20116048-20116125,20115880-20115933,20115643-20115798,20115457-20115555,20115273-20115359,20115037-20115119,20114635-20114748,20114367-20114421,20114199-20114285,20114042-20114097,20113890-20113949,20113694-20113781,20112831-20113595,20112679-20112739,20112505-20112607,20112295-20112429,20112071-20112155	AT5G49570.1  CDS  gene_syn Arabidopsis thaliana peptide-N-glycanase 1, AtPNG1, K6M13.12, K6M13_12  gene AtPNG1  function Encodes a protein that has peptide:N-glycanase activity in enzymatic assay in heterologous systems (although the activity was not detected in wild-type plants).  go_component cytosol|GO:0005829|17666024|IDA  go_process response to salicylic acid stimulus|GO:0009751|17666024|IEP  go_process response to microbial phytotoxin|GO:0010188|17666024|IEP  go_process response to ozone|GO:0010193|17666024|IEP  go_function peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity|GO:0000224|17666024|IDA  go_function peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity|GO:0000224|17666024|IGI  go_function catalytic activity|GO:0003824||ISS  product AtPNG1 (Arabidopsis thaliana peptide-N-glycanase 1); catalytic/ peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase  note Arabidopsis thaliana peptide-N-glycanase 1 (AtPNG1); FUNCTIONS IN: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity, catalytic activity; INVOLVED IN: response to microbial phytotoxin, response to ozone, response to salicylic acid stimulus; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transglutaminase-like (InterPro:IPR002931), Galactose-binding like (InterPro:IPR008979); Has 453 Blast hits to 424 proteins in 146 species: Archae - 2; Bacteria - 95; Metazoa - 154; Fungi - 116; Plants - 38; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT5G49570.1p  transcript_id AT5G49570.1  protein_id AT5G49570.1p  transcript_id AT5G49570.1  
At5g49580	chr5:020126052	0.0	C/20126052-20126813,20125851-20125980,20125353-20125759,20125171-20125251,20124985-20125083,20124673-20124834,20124455-20124541,20124212-20124283,20123823-20124110	AT5G49580.1  CDS  gene_syn K6M13.13, K6M13_13  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putative (TAIR:AT1G16680.1); Has 12162 Blast hits to 12160 proteins in 1839 species: Archae - 79; Bacteria - 4226; Metazoa - 2465; Fungi - 984; Plants - 808; Viruses - 34; Other Eukaryotes - 3566 (source: NCBI BLink).  protein_id AT5G49580.1p  transcript_id AT5G49580.1  protein_id AT5G49580.1p  transcript_id AT5G49580.1  
At5g49590	chr5:020128736	0.0	W/20128736-20128836,20129269-20129554	AT5G49590.1  CDS  gene_syn K6M13.15, K6M13_15  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G49590.1p  transcript_id AT5G49590.1  protein_id AT5G49590.1p  transcript_id AT5G49590.1  
At5g49600	chr5:020130780	0.0	W/20130780-20131295	AT5G49600.1  CDS  gene_syn K6M13.16, K6M13_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09310.1); Has 173 Blast hits to 171 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G49600.1p  transcript_id AT5G49600.1  protein_id AT5G49600.1p  transcript_id AT5G49600.1  
At5g49610	chr5:020131448	0.0	C/20131448-20132527	AT5G49610.1  CDS  gene_syn K6M13.17, K6M13_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G33530.1); Has 993 Blast hits to 986 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 981; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G49610.1p  transcript_id AT5G49610.1  protein_id AT5G49610.1p  transcript_id AT5G49610.1  
At5g49615	chr5:020134200	0.0	W/20134200-20134786	AT5G49615.1  ncRNA  gene_syn TAS3b, trans-acting siRNA 3b  gene TAS3b  function trans-acting siRNA (tasi-RNA)  product TAS3b (trans-acting siRNA 3b); other RNA  transcript_id AT5G49615.1  
At5g49620	chr5:020139210	0.0	C/20139210-20139384,20138319-20138448,20137491-20138109	AT5G49620.1  CDS  gene_syn AtMYB78, K6M13.18, K6M13_18, myb domain protein 78  gene AtMYB78  function Member of the R2R3 factor gene family.  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16258012|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product AtMYB78 (myb domain protein 78); DNA binding / transcription factor  note myb domain protein 78 (AtMYB78); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to salt stress, response to abscisic acid stimulus, regulation of transcription, DNA-dependent; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB108 (myb domain protein 108); DNA binding / transcription factor (TAIR:AT3G06490.1); Has 6155 Blast hits to 5690 proteins in 342 species: Archae - 0; Bacteria - 0; Metazoa - 646; Fungi - 273; Plants - 3694; Viruses - 6; Other Eukaryotes - 1536 (source: NCBI BLink).  protein_id AT5G49620.1p  transcript_id AT5G49620.1  protein_id AT5G49620.1p  transcript_id AT5G49620.1  
At5g49630	chr5:020146339	0.0	C/20146339-20146441,20145699-20145932,20144771-20144864,20143983-20144197,20143750-20143895,20142681-20143334	AT5G49630.1  CDS  gene_syn AAP6, AMINO ACID PERMEASE 6, MNI5.1, MNI5_1  gene AAP6  function Is a high affinity amino acid transporter capable of transporting aspartate and tryptophan. May be involved in the amino acid uptake from xylem.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020||ISS  go_process response to water deprivation|GO:0009414|8776904|IEP  go_process response to salt stress|GO:0009651|8776904|IEP  go_process aspartate transport|GO:0015810|12148530|IDA  go_process tryptophan transport|GO:0015827|12148530|IDA  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  go_function acidic amino acid transmembrane transporter activity|GO:0015172|12148530|IDA  go_function neutral amino acid transmembrane transporter activity|GO:0015175|12148530|IDA  product AAP6 (AMINO ACID PERMEASE 6); acidic amino acid transmembrane transporter/ amino acid transmembrane transporter/ neutral amino acid transmembrane transporter  note AMINO ACID PERMEASE 6 (AAP6); FUNCTIONS IN: neutral amino acid transmembrane transporter activity, acidic amino acid transmembrane transporter activity, amino acid transmembrane transporter activity; INVOLVED IN: response to salt stress, response to water deprivation, aspartate transport, tryptophan transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: AAP1 (AMINO ACID PERMEASE 1); amino acid transmembrane transporter/ neutral amino acid transmembrane transporter (TAIR:AT1G58360.1); Has 1275 Blast hits to 1267 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 293; Fungi - 172; Plants - 735; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT5G49630.1p  transcript_id AT5G49630.1  protein_id AT5G49630.1p  transcript_id AT5G49630.1  
At5g49640	chr5:020151417	0.0	W/20151417-20151629	AT5G49640.1  CDS  gene_syn MNI5.2, MNI5_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G49640.1p  transcript_id AT5G49640.1  protein_id AT5G49640.1p  transcript_id AT5G49640.1  
At5g49650	chr5:020152898	0.0	W/20152898-20152956,20153075-20153729,20153804-20153892,20153974-20154038,20154224-20154279,20154379-20154499,20154591-20154665,20154753-20154806,20154896-20154990,20155077-20155251,20155342-20155574	AT5G49650.1  CDS  gene_syn MNI5.3, MNI5_3  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process xylulose catabolic process|GO:0005998||IEA  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_component cellular_component|GO:0005575||ND  go_function xylulokinase activity|GO:0004856||ISS  product xylulose kinase, putative  note xylulose kinase, putative; FUNCTIONS IN: xylulokinase activity, phosphotransferase activity, alcohol group as acceptor; INVOLVED IN: carbohydrate metabolic process, xylulose catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate kinase, FGGY (InterPro:IPR000577), Carbohydrate kinase, FGGY, N-terminal (InterPro:IPR018484), Carbohydrate kinase, FGGY, C-terminal (InterPro:IPR018485); Has 2320 Blast hits to 2320 proteins in 693 species: Archae - 2; Bacteria - 1651; Metazoa - 139; Fungi - 96; Plants - 28; Viruses - 0; Other Eukaryotes - 404 (source: NCBI BLink).  protein_id AT5G49650.1p  transcript_id AT5G49650.1  protein_id AT5G49650.1p  transcript_id AT5G49650.1  
At5g49650	chr5:020152898	0.0	W/20152898-20152956,20153075-20153729,20153804-20153892,20153974-20154038,20154224-20154279,20154379-20154499,20154591-20154665,20154753-20154806,20154896-20154990,20155082-20155093	AT5G49650.2  CDS  gene_syn MNI5.3, MNI5_3  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_component cellular_component|GO:0005575||ND  go_function xylulokinase activity|GO:0004856||ISS  product xylulose kinase, putative  note xylulose kinase, putative; FUNCTIONS IN: xylulokinase activity, phosphotransferase activity, alcohol group as acceptor; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate kinase, FGGY (InterPro:IPR000577), Carbohydrate kinase, FGGY, N-terminal (InterPro:IPR018484); Has 2169 Blast hits to 2169 proteins in 672 species: Archae - 2; Bacteria - 1532; Metazoa - 137; Fungi - 96; Plants - 28; Viruses - 0; Other Eukaryotes - 374 (source: NCBI BLink).  protein_id AT5G49650.2p  transcript_id AT5G49650.2  protein_id AT5G49650.2p  transcript_id AT5G49650.2  
At5g49660	chr5:020162032	0.0	C/20162032-20164534,20161401-20161798	AT5G49660.1  CDS  gene_syn MNI5.4, MNI5_4  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: LRR XI-23; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT1G09970.1); Has 144899 Blast hits to 102487 proteins in 3211 species: Archae - 86; Bacteria - 11952; Metazoa - 56566; Fungi - 7731; Plants - 48232; Viruses - 470; Other Eukaryotes - 19862 (source: NCBI BLink).  protein_id AT5G49660.1p  transcript_id AT5G49660.1  protein_id AT5G49660.1p  transcript_id AT5G49660.1  
At5g49665	chr5:020169064	0.0	C/20169064-20169420,20167119-20168984	AT5G49665.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: EDA40 (embryo sac development arrest 40); protein binding / ubiquitin-protein ligase/ zinc ion binding (TAIR:AT4G37890.2); Has 1018 Blast hits to 1015 proteins in 211 species: Archae - 0; Bacteria - 369; Metazoa - 152; Fungi - 61; Plants - 249; Viruses - 0; Other Eukaryotes - 187 (source: NCBI BLink).  protein_id AT5G49665.1p  transcript_id AT5G49665.1  protein_id AT5G49665.1p  transcript_id AT5G49665.1  
At5g49680	chr5:020176385	0.0	W/20176385-20176455,20176793-20176892,20176982-20177248,20177706-20177968,20178064-20178280,20178532-20178702,20178801-20178878,20179085-20179336,20179536-20181647,20181936-20183754,20183878-20183984,20184391-20184747,20185056-20185174,20185295-20185544,20185627-20185851,20186075-20186214,20186531-20186603,20186707-20186808,20186899-20186997,20187093-20187392,20187483-20187650,20187739-20188090,20188186-20188307	AT5G49680.2  CDS  function Conserved among eukaryotes, similar to Arabidopsis SABRE. The phenotype of the kip/sab double mutant suggests related functions for both genes, however, the KIP protein is mostly required for tip-growth. Predicted to be targeted to the secretory pathway. mRNA was detected in all organs, with most abundance in pollen and roots.  go_component endomembrane system|GO:0012505||IEA  product cell expansion protein, putative  note cell expansion protein, putative; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: SAB (SABRE) (TAIR:AT1G58250.1); Has 175 Blast hits to 131 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 102; Fungi - 23; Plants - 43; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G49680.2p  transcript_id AT5G49680.2  protein_id AT5G49680.2p  transcript_id AT5G49680.2  
At5g49690	chr5:020189968	0.0	C/20189968-20191350	AT5G49690.1  CDS  gene_syn K2I5.5, K2I5_5  go_process metabolic process|GO:0008152||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT5G65550.1); Has 4199 Blast hits to 4154 proteins in 255 species: Archae - 0; Bacteria - 127; Metazoa - 1383; Fungi - 9; Plants - 2646; Viruses - 10; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT5G49690.1p  transcript_id AT5G49690.1  protein_id AT5G49690.1p  transcript_id AT5G49690.1  
At5g49700	chr5:020192599	0.0	W/20192599-20193429	AT5G49700.1  CDS  gene_syn K2I5.6, K2I5_6  go_process biological_process|GO:0008150||ND  product DNA-binding protein-related  note DNA-binding protein-related; INVOLVED IN: biological_process unknown; EXPRESSED IN: shoot apex, embryo, inflorescence meristem; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: DNA-binding protein-related (TAIR:AT1G14490.1); Has 424 Blast hits to 423 proteins in 20 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 2; Plants - 417; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G49700.1p  transcript_id AT5G49700.1  protein_id AT5G49700.1p  transcript_id AT5G49700.1  
At5g49710	chr5:020195561	0.0	W/20195561-20195797,20195991-20196081,20196157-20196317,20196405-20196432,20196899-20197007,20197107-20197188	AT5G49710.3  CDS  gene_syn K2I5.7, K2I5_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24590.1); Has 66 Blast hits to 66 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G49710.3p  transcript_id AT5G49710.3  protein_id AT5G49710.3p  transcript_id AT5G49710.3  
At5g49710	chr5:020195561	0.0	W/20195561-20195797,20195991-20196081,20196157-20196317,20196405-20196506	AT5G49710.2  CDS  gene_syn K2I5.7, K2I5_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24590.1); Has 48 Blast hits to 48 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G49710.2p  transcript_id AT5G49710.2  protein_id AT5G49710.2p  transcript_id AT5G49710.2  
At5g49710	chr5:020195561	0.0	W/20195561-20195797,20195991-20196081,20196160-20196317,20196405-20196432,20196899-20197007,20197107-20197188	AT5G49710.1  CDS  gene_syn K2I5.7, K2I5_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24590.1); Has 110 Blast hits to 110 proteins in 41 species: Archae - 0; Bacteria - 51; Metazoa - 5; Fungi - 1; Plants - 48; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G49710.1p  transcript_id AT5G49710.1  protein_id AT5G49710.1p  transcript_id AT5G49710.1  
At5g49720	chr5:020199796	0.0	C/20199796-20200168,20199407-20199717,20198869-20199333,20198617-20198752,20198343-20198515,20197765-20198172	AT5G49720.1  CDS  gene_syn ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1, ATGH9A1, CELLULASE, DEC, DEFECTIVE CYTOKINESIS, IRREGULAR XYLEM 2, IRX2, K2I5.8, K2I5_8, KOR, KOR1, KORRIGAN, KORRIGAN 1, RADIALLY SWOLLEN 2, RSW2  gene ATGH9A1  function Encodes a membrane-bound endo-1,4-beta-D-glucanase, involved in cellulose biosynthesis. Loss-of-function mutants have severe cellulose-deficient phenotypes. During cell elongation, KOR1 is associated with Golgi apparatus and early endosome. Inhibition of cellulose biosynthesis promoted a redistribution of KOR1 in subcellular locations. These observations suggest that deposition of cellulose involves the intracellular cycling of KOR1.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component early endosome|GO:0005769|16284310|IDA  go_component Golgi apparatus|GO:0005794|16284310|IDA  go_component cell plate|GO:0009504|10899980|IDA  go_process unidimensional cell growth|GO:0009826|10987560|IMP  go_process cellulose biosynthetic process|GO:0030244|12514238|TAS  go_process cellulose biosynthetic process|GO:0030244|18583534|IMP  go_process hyperosmotic salinity response|GO:0042538|18408158|IMP  go_process cortical microtubule organization|GO:0043622|18583534|IMP  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function cellulase activity|GO:0008810|9755157|ISS  product ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1); cellulase/ hydrolase, hydrolyzing O-glycosyl compounds  note ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1 (ATGH9A1); FUNCTIONS IN: cellulase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: cortical microtubule organization, hyperosmotic salinity response, cellulose biosynthetic process, unidimensional cell growth; LOCATED IN: Golgi apparatus, plasma membrane, early endosome, cell plate; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: ATGH9A3 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A3); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT4G24260.1); Has 1098 Blast hits to 1094 proteins in 179 species: Archae - 0; Bacteria - 299; Metazoa - 139; Fungi - 14; Plants - 616; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT5G49720.1p  transcript_id AT5G49720.1  protein_id AT5G49720.1p  transcript_id AT5G49720.1  
At5g49730	chr5:020204251	0.0	C/20204251-20204455,20204065-20204161,20203779-20203976,20203458-20203692,20202958-20203285,20202593-20202872,20202257-20202512,20201727-20202174,20201355-20201524	AT5G49730.1  CDS  gene_syn ATFRO6, FERRIC REDUCTION OXIDASE 6, FRO6, K2I5.9, K2I5_9  gene ATFRO6  function Encodes a plasma membrane-located ferric chelate reductase. Its mRNA is expressed in green aerial tissues (shoot, flower and cotyledon) in a light- and cell differentiation-specific manner.  go_component plasma membrane|GO:0005886|18647837|IDA  go_component membrane|GO:0016020||ISS  go_process response to light stimulus|GO:0009416|16489134|IEP  go_function ferric-chelate reductase activity|GO:0000293|16006655|IDA  go_function ferric-chelate reductase activity|GO:0000293|18647837|IDA  go_function oxidoreductase activity|GO:0016491||ISS  product ATFRO6 (FERRIC REDUCTION OXIDASE 6); ferric-chelate reductase/ oxidoreductase  note FERRIC REDUCTION OXIDASE 6 (ATFRO6); FUNCTIONS IN: oxidoreductase activity, ferric-chelate reductase activity; INVOLVED IN: response to light stimulus; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: shoot, cotyledon, flower; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Ferric reductase, NAD binding (InterPro:IPR013121), Cytochrome b245, heavy chain (InterPro:IPR000778), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130); BEST Arabidopsis thaliana protein match is: ATFRO7 (FERRIC REDUCTION OXIDASE 7); ferric-chelate reductase/ oxidoreductase (TAIR:AT5G49740.1); Has 1809 Blast hits to 1761 proteins in 269 species: Archae - 0; Bacteria - 198; Metazoa - 518; Fungi - 731; Plants - 252; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT5G49730.1p  transcript_id AT5G49730.1  protein_id AT5G49730.1p  transcript_id AT5G49730.1  
At5g49740	chr5:020208397	0.0	C/20208397-20208628,20208221-20208317,20207919-20208116,20207593-20207827,20207155-20207482,20206786-20207065,20206450-20206705,20205921-20206368,20205549-20205718	AT5G49740.1  CDS  gene_syn ATFRO7, FERRIC REDUCTION OXIDASE 7, FRO7, K2I5.10, K2I5_10  gene ATFRO7  function Encodes a chloroplast ferric chelate reductase. Shows differential splicing and has three different mRNA products. Expressed in the shoot, flower and cotyledon.  go_component chloroplast|GO:0009507|18647837|IDA  go_component membrane|GO:0016020||ISS  go_process photosynthetic electron transport chain|GO:0009767|18647837|IMP  go_function ferric-chelate reductase activity|GO:0000293|16006655|IDA  go_function ferric-chelate reductase activity|GO:0000293|18647837|IMP  go_function oxidoreductase activity|GO:0016491||ISS  product ATFRO7 (FERRIC REDUCTION OXIDASE 7); ferric-chelate reductase/ oxidoreductase  note FERRIC REDUCTION OXIDASE 7 (ATFRO7); FUNCTIONS IN: oxidoreductase activity, ferric-chelate reductase activity; INVOLVED IN: photosynthetic electron transport chain; LOCATED IN: chloroplast, membrane; EXPRESSED IN: shoot, cotyledon, fruit, flower; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Ferric reductase, NAD binding (InterPro:IPR013121), Cytochrome b245, heavy chain (InterPro:IPR000778), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130); BEST Arabidopsis thaliana protein match is: ATFRO6 (FERRIC REDUCTION OXIDASE 6); ferric-chelate reductase/ oxidoreductase (TAIR:AT5G49730.1); Has 1814 Blast hits to 1711 proteins in 231 species: Archae - 0; Bacteria - 131; Metazoa - 596; Fungi - 726; Plants - 252; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).  protein_id AT5G49740.1p  transcript_id AT5G49740.1  protein_id AT5G49740.1p  transcript_id AT5G49740.1  
At5g49743	chr5:020209066	0.0	W/20209066-20209306	AT5G49743.1  mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At5g49746	chr5:020209340	0.0	W/20209340-20209659	AT5G49746.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 2.0e-20 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element)  
At5g49750	chr5:020210878	0.0	W/20210878-20211136,20211215-20211335,20211417-20211488,20211559-20211633,20211718-20211789,20212118-20212282,20212376-20212450,20212547-20212618,20212707-20212778,20212851-20212919,20213035-20213109,20213205-20213276,20213372-20213506,20213587-20213734	AT5G49750.1  CDS  gene_syn K2I5.12, K2I5_12  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / protein kinase family protein (TAIR:AT5G49760.1); Has 33514 Blast hits to 12620 proteins in 582 species: Archae - 16; Bacteria - 1703; Metazoa - 5611; Fungi - 326; Plants - 23601; Viruses - 2; Other Eukaryotes - 2255 (source: NCBI BLink).  protein_id AT5G49750.1p  transcript_id AT5G49750.1  protein_id AT5G49750.1p  transcript_id AT5G49750.1  
At5g49760	chr5:020216679	0.0	W/20216679-20216766,20216846-20216966,20217042-20217113,20217198-20217272,20217366-20217437,20217524-20217688,20217783-20217857,20217953-20218024,20218104-20218175,20218263-20218331,20218420-20218494,20218580-20218651,20218748-20218882,20218959-20219434,20219525-20219680,20219750-20219886,20219976-20220195,20220269-20220504,20220579-20221052	AT5G49760.1  CDS  gene_syn K2I5.13, K2I5_13  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat family protein / protein kinase family protein  note leucine-rich repeat family protein / protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT5G49770.1); Has 121904 Blast hits to 97173 proteins in 3415 species: Archae - 70; Bacteria - 9978; Metazoa - 45515; Fungi - 7395; Plants - 41025; Viruses - 430; Other Eukaryotes - 17491 (source: NCBI BLink).  protein_id AT5G49760.1p  transcript_id AT5G49760.1  protein_id AT5G49760.1p  transcript_id AT5G49760.1  
At5g49770	chr5:020222860	0.0	W/20222860-20222953,20223042-20223165,20223267-20223338,20223415-20223489,20223577-20223648,20223746-20223910,20224007-20224081,20224181-20224252,20224332-20224403,20224491-20224559,20224665-20224739,20224822-20224893,20224993-20225127,20225202-20225680,20225763-20225915,20226003-20226139,20226221-20226440,20226510-20226745,20226824-20227267	AT5G49770.1  CDS  gene_syn K2I5.14, K2I5_14  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / protein kinase family protein (TAIR:AT5G49760.1); Has 124002 Blast hits to 97447 proteins in 3373 species: Archae - 74; Bacteria - 10912; Metazoa - 46486; Fungi - 7334; Plants - 41312; Viruses - 413; Other Eukaryotes - 17471 (source: NCBI BLink).  protein_id AT5G49770.1p  transcript_id AT5G49770.1  protein_id AT5G49770.1p  transcript_id AT5G49770.1  
At5g49780	chr5:020229499	0.0	W/20229499-20229563,20229661-20229825,20229926-20230000,20230078-20230149,20230230-20230301,20230391-20230459,20230553-20230630,20230710-20230781,20230883-20231026,20231102-20231589,20231674-20232234,20232303-20232538,20232619-20233095	AT5G49780.1  CDS  gene_syn K2I5.15, K2I5_15  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product ATP binding / kinase/ protein serine/threonine kinase  note ATP binding / kinase/ protein serine/threonine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; EXPRESSED IN: shoot, hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / protein kinase family protein (TAIR:AT5G49760.1); Has 122189 Blast hits to 97525 proteins in 3412 species: Archae - 72; Bacteria - 10566; Metazoa - 46209; Fungi - 7366; Plants - 40335; Viruses - 422; Other Eukaryotes - 17219 (source: NCBI BLink).  protein_id AT5G49780.1p  transcript_id AT5G49780.1  protein_id AT5G49780.1p  transcript_id AT5G49780.1  
At5g49790	chr5:020233146	0.0	W/20233146-20233511	AT5G49790.1  mRNA_TE_gene  pseudo  gene_syn K2I5.16, K2I5_16  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G36010.1); similar to Hypothetical protein CBG16043 [Caenorhabditis briggsae] (GB:CAE69762.1)  
At5g49800	chr5:020236104	0.0	C/20236104-20236135,20235772-20236030,20234987-20235301,20234771-20234893	AT5G49800.1  CDS  gene_syn K21G20.1, K21G20_1  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, C globular stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); Has 156 Blast hits to 155 proteins in 50 species: Archae - 0; Bacteria - 14; Metazoa - 91; Fungi - 2; Plants - 15; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT5G49800.1p  transcript_id AT5G49800.1  protein_id AT5G49800.1p  transcript_id AT5G49800.1  
At5g49810	chr5:020239418	0.0	W/20239418-20239643,20240504-20240697,20240953-20241159,20241271-20241366,20241814-20242002,20242075-20242263,20242353-20242589,20242847-20242981,20243619-20243936,20244060-20244239,20244553-20245497,20245747-20246046	AT5G49810.1  CDS  gene_syn MET S-METHYLTRANSFERASE, MMT  gene MMT  function Arabidopsis thaliana methionine S-methyltransferase, an enzyme that catalyzes S -methylmethionine formation.  go_component cellular_component|GO:0005575||ND  go_process S-adenosylmethionine metabolic process|GO:0046500|12692340|IMP  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757|12692340|IMP  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757||ISS  product MMT; S-adenosylmethionine-dependent methyltransferase  note MMT; FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity; INVOLVED IN: S-adenosylmethionine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Methyltransferase small (InterPro:IPR007848), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); Has 2795 Blast hits to 2794 proteins in 771 species: Archae - 64; Bacteria - 1752; Metazoa - 22; Fungi - 7; Plants - 148; Viruses - 0; Other Eukaryotes - 802 (source: NCBI BLink).  protein_id AT5G49810.1p  transcript_id AT5G49810.1  protein_id AT5G49810.1p  transcript_id AT5G49810.1  
At5g49820	chr5:020249127	0.0	C/20249127-20249432,20248938-20249036,20248752-20248865,20248578-20248649,20248394-20248504,20248173-20248292,20247872-20247973,20247706-20247778,20247503-20247586,20247356-20247420,20247171-20247272,20246901-20247074,20246753-20246824	AT5G49820.1  CDS  gene_syn K21G20.3, K21G20_3, emb1879, embryo defective 1879  gene emb1879  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product emb1879 (embryo defective 1879)  note embryo defective 1879 (emb1879); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF647 (InterPro:IPR006968); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31190.1); Has 261 Blast hits to 259 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 37; Plants - 98; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT5G49820.1p  transcript_id AT5G49820.1  protein_id AT5G49820.1p  transcript_id AT5G49820.1  
At5g49830	chr5:020254626	0.0	C/20254626-20254766,20253821-20253918,20252590-20253610,20251681-20252196,20251278-20251466,20251046-20251182,20250803-20250959	AT5G49830.1  CDS  gene_syn K21G20.4, K21G20_4  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  product unknown protein  note LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vps51/Vps67 (InterPro:IPR014812); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10385.1); Has 257 Blast hits to 210 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 133; Fungi - 61; Plants - 56; Viruses - 2; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G49830.1p  transcript_id AT5G49830.1  protein_id AT5G49830.1p  transcript_id AT5G49830.1  
At5g49830	chr5:020254626	0.0	C/20254626-20254766,20254350-20254464,20254079-20254149,20253821-20253918,20252590-20253610,20251681-20252196,20251278-20251466,20251046-20251182,20250803-20250959	AT5G49830.2  CDS  gene_syn K21G20.4, K21G20_4  product unknown protein  note EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vps51/Vps67 (InterPro:IPR014812); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10385.1).  protein_id AT5G49830.2p  transcript_id AT5G49830.2  protein_id AT5G49830.2p  transcript_id AT5G49830.2  
At5g49830	chr5:020254626	0.0	C/20254626-20254766,20254372-20254464,20253821-20253918,20252590-20253610,20251681-20252196,20251278-20251466,20251046-20251182,20250803-20250959	AT5G49830.3  CDS  gene_syn K21G20.4, K21G20_4  product unknown protein  note EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vps51/Vps67 (InterPro:IPR014812); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10385.1).  protein_id AT5G49830.3p  transcript_id AT5G49830.3  protein_id AT5G49830.3p  transcript_id AT5G49830.3  
At5g49840	chr5:020255243	0.0	W/20255243-20255899,20255977-20256038,20256126-20256226,20256331-20256414,20256628-20256674,20256965-20257039,20257120-20257197,20257410-20257472,20257603-20257673,20257777-20257876,20258015-20258119,20258372-20258434,20258519-20258641,20258755-20258907,20258991-20259035	AT5G49840.1  CDS  gene_syn K21G20.5, K21G20_5  go_process protein transport|GO:0015031||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATPase activity|GO:0016887||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATPase activity|GO:0016887||ISS  product ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding  note ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding; FUNCTIONS IN: protein binding, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein transport; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase associated with various cellular activities, AAA-2 (InterPro:IPR013093), ClpX, ATPase regulatory subunit (InterPro:IPR004487); BEST Arabidopsis thaliana protein match is: CLPX; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding (TAIR:AT5G53350.1); Has 20215 Blast hits to 17767 proteins in 1746 species: Archae - 354; Bacteria - 9542; Metazoa - 1085; Fungi - 712; Plants - 519; Viruses - 0; Other Eukaryotes - 8003 (source: NCBI BLink).  protein_id AT5G49840.1p  transcript_id AT5G49840.1  protein_id AT5G49840.1p  transcript_id AT5G49840.1  
At5g49850	chr5:020262035	0.0	C/20262035-20262232,20261485-20261922,20260952-20261389,20260404-20260862,20260049-20260306	AT5G49850.1  CDS  gene_syn K21G20.6, K21G20_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product jacalin lectin family protein  note jacalin lectin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin lectin family protein (TAIR:AT5G49870.1); Has 1090 Blast hits to 372 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1089; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G49850.1p  transcript_id AT5G49850.1  protein_id AT5G49850.1p  transcript_id AT5G49850.1  
At5g49860	chr5:020264927	0.0	C/20264927-20265334,20264567-20264824	AT5G49860.1  CDS  gene_syn K21G20.7, K21G20_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product jacalin lectin family protein  note jacalin lectin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin lectin family protein (TAIR:AT5G49870.1); Has 771 Blast hits to 407 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 771; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G49860.1p  transcript_id AT5G49860.1  protein_id AT5G49860.1p  transcript_id AT5G49860.1  
At5g49870	chr5:020272345	0.0	C/20272345-20272548,20271786-20272229,20271239-20271679,20270705-20271163,20270347-20270604	AT5G49870.1  CDS  gene_syn K9P8.1, K9P8_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product jacalin lectin family protein  note jacalin lectin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin lectin family protein (TAIR:AT5G49850.1); Has 1303 Blast hits to 450 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1300; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G49870.1p  transcript_id AT5G49870.1  protein_id AT5G49870.1p  transcript_id AT5G49870.1  
At5g49880	chr5:020282305	0.0	W/20282305-20282499,20282576-20282675,20282776-20282936,20283021-20283218,20283316-20283408,20283514-20283630,20284213-20284460,20284810-20284981,20285678-20285788,20285873-20286076,20286331-20286493,20286781-20286871,20286968-20287037,20287351-20287479,20287563-20287601,20287686-20287775	AT5G49880.1  CDS  gene_syn K9P8.2, K9P8_2  go_process mitotic cell cycle checkpoint|GO:0007093||ISS  product mitotic checkpoint family protein  note mitotic checkpoint family protein; INVOLVED IN: mitotic cell cycle checkpoint; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitotic checkpoint (InterPro:IPR008672); Has 61597 Blast hits to 33659 proteins in 1634 species: Archae - 732; Bacteria - 6927; Metazoa - 32200; Fungi - 4864; Plants - 2266; Viruses - 225; Other Eukaryotes - 14383 (source: NCBI BLink).  protein_id AT5G49880.1p  transcript_id AT5G49880.1  protein_id AT5G49880.1p  transcript_id AT5G49880.1  
At5g49890	chr5:020291938	0.0	C/20291938-20292143,20291238-20291438,20290864-20291041,20290490-20290752,20289909-20290178,20288655-20289786,20288489-20288578	AT5G49890.1  CDS  gene_syn ATCLC-C, CHLORIDE CHANNEL C, CLC-C, K9P8.3, K9P8_3  gene CLC-C  function member of Anion channel protein family  go_component plasma membrane|GO:0005886|17151019|IDA  go_process chloride transport|GO:0006821||IEA  go_component intracellular|GO:0005622|8969232|TAS  go_process chloride transport|GO:0006821||ISS  go_function voltage-gated chloride channel activity|GO:0005247||ISS  go_function anion channel activity|GO:0005253||ISS  product CLC-C (CHLORIDE CHANNEL C); anion channel/ voltage-gated chloride channel  note CHLORIDE CHANNEL C (CLC-C); FUNCTIONS IN: anion channel activity, voltage-gated chloride channel activity; INVOLVED IN: chloride transport; LOCATED IN: intracellular, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chloride channel, core (InterPro:IPR014743), Chloride channel, voltage gated (InterPro:IPR001807), Chloride channel plant CLC (InterPro:IPR002251), Cystathionine beta-synthase, core (InterPro:IPR000644), Twin-arginine translocation pathway signal (InterPro:IPR006311); BEST Arabidopsis thaliana protein match is: chloride channel-like (CLC) protein, putative (TAIR:AT5G33280.1); Has 4693 Blast hits to 4235 proteins in 973 species: Archae - 75; Bacteria - 2706; Metazoa - 872; Fungi - 219; Plants - 192; Viruses - 0; Other Eukaryotes - 629 (source: NCBI BLink).  protein_id AT5G49890.1p  transcript_id AT5G49890.1  protein_id AT5G49890.1p  transcript_id AT5G49890.1  
At5g49900	chr5:020301954	0.0	C/20301954-20302019,20301609-20301713,20301441-20301497,20301272-20301342,20300995-20301094,20300803-20300873,20300616-20300716,20300419-20300522,20300277-20300330,20300129-20300184,20299979-20300017,20299712-20299856,20299436-20299617,20299299-20299366,20299142-20299214,20298997-20299058,20297976-20298906,20297600-20297890,20297235-20297532	AT5G49900.1  CDS  gene_syn K9P8.4, K9P8_4  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process sphingolipid metabolic process|GO:0006665||IEA  go_process glucosylceramide catabolic process|GO:0006680||IEA  go_function catalytic activity|GO:0003824||IEA  go_function glucosylceramidase activity|GO:0004348||IEA  product catalytic/ glucosylceramidase  note catalytic/ glucosylceramidase; FUNCTIONS IN: catalytic activity, glucosylceramidase activity; INVOLVED IN: glucosylceramide catabolic process, sphingolipid metabolic process; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glucosylceramidase (InterPro:IPR006775), Six-hairpin glycosidase-like (InterPro:IPR008928), Beta-glucosidase, GBA2 type (InterPro:IPR014551); BEST Arabidopsis thaliana protein match is: catalytic/ glucosylceramidase (TAIR:AT1G33700.2); Has 613 Blast hits to 494 proteins in 120 species: Archae - 24; Bacteria - 224; Metazoa - 132; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).  protein_id AT5G49900.1p  transcript_id AT5G49900.1  protein_id AT5G49900.1p  transcript_id AT5G49900.1  
At5g49910	chr5:020303470	0.0	W/20303470-20304051,20304129-20304381,20304491-20304570,20304654-20304796,20304877-20304975,20305091-20305280,20305390-20305788,20305885-20306295	AT5G49910.1  CDS  gene_syn CHLOROPLAST HEAT SHOCK PROTEIN 70-2, CPHSC70-2EAT SHOCK PROTEIN 70-2, HEAT SHOCK PROTEIN 70, HEAT SHOCK PROTEIN 70-7, HSC70-7, K9P8.5, K9P8_5  gene CPHSC70-2EAT SHOCK PROTEIN 70-2  function heat shock protein 70 (Hsc70-7); nuclear  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ATP binding|GO:0005524||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component plastid stroma|GO:0009532|11402207|TAS  go_process protein folding|GO:0006457|11402207|TAS  go_process response to heat|GO:0009408|11402207|IEP  product CPHSC70-2EAT SHOCK PROTEIN 70-2 (CHLOROPLAST HEAT SHOCK PROTEIN 70-2); ATP binding / unfolded protein binding  note CHLOROPLAST HEAT SHOCK PROTEIN 70-2 (CPHSC70-2EAT SHOCK PROTEIN 70-2); FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, response to cadmium ion, response to heat; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Chaperone DnaK (InterPro:IPR012725), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: cpHsc70-1 (chloroplast heat shock protein 70-1); ATP binding (TAIR:AT4G24280.1); Has 26244 Blast hits to 26150 proteins in 3134 species: Archae - 103; Bacteria - 10411; Metazoa - 2931; Fungi - 1157; Plants - 699; Viruses - 264; Other Eukaryotes - 10679 (source: NCBI BLink).  protein_id AT5G49910.1p  transcript_id AT5G49910.1  protein_id AT5G49910.1p  transcript_id AT5G49910.1  
At5g49920	chr5:020307439	0.0	C/20307439-20307583,20306637-20307358	AT5G49920.1  CDS  gene_syn K9P8.6, K9P8_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product octicosapeptide/Phox/Bem1p (PB1) domain-containing protein  note octicosapeptide/Phox/Bem1p (PB1) domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G46920.1); Has 185 Blast hits to 185 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 183; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G49920.1p  transcript_id AT5G49920.1  protein_id AT5G49920.1p  transcript_id AT5G49920.1  
At5g49930	chr5:020312632	0.0	C/20312632-20312736,20312419-20312531,20312237-20312333,20312027-20312151,20311426-20311909,20311148-20311333,20310744-20311037,20310505-20310657,20310264-20310418,20310066-20310171,20309122-20309973,20308940-20309021,20308537-20308830,20308260-20308456	AT5G49930.1  CDS  gene_syn K9P8.7, K9P8_7, emb1441, embryo defective 1441  gene emb1441  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function nucleic acid binding|GO:0003676||ISS  product emb1441 (embryo defective 1441); nucleic acid binding / zinc ion binding  note embryo defective 1441 (emb1441); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fibronectin-binding A, N-terminal (InterPro:IPR008616), Zinc finger, CCHC-type (InterPro:IPR001878), Protein of unknown function DUF814 (InterPro:IPR008532); Has 2906 Blast hits to 2454 proteins in 381 species: Archae - 144; Bacteria - 336; Metazoa - 995; Fungi - 294; Plants - 92; Viruses - 7; Other Eukaryotes - 1038 (source: NCBI BLink).  protein_id AT5G49930.1p  transcript_id AT5G49930.1  protein_id AT5G49930.1p  transcript_id AT5G49930.1  
At5g49940	chr5:020315464	0.0	W/20315464-20315562,20315680-20315788,20316634-20316944,20317040-20317228	AT5G49940.1  CDS  gene_syn ATCNFU2, CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, K9P8.16, NFU2, NIFU-LIKE PROTEIN 2  gene NFU2  function Encodes a protein containing the NFU domain and functions as a molecular scaffold for iron-sulfur cluster assembly and delivery. Homologous to the cyanobacterial CNFU protein and is targeted to the chloroplast.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|12553879|IDA  go_component chloroplast|GO:0009507|15031412|IDA  go_process chloroplast organization|GO:0009658|15031412|IMP  go_process iron-sulfur cluster assembly|GO:0016226|12553879|IGI  go_process iron-sulfur cluster assembly|GO:0016226|15031412|IMP  go_function structural molecule activity|GO:0005198|12553879|TAS  product NFU2 (NIFU-LIKE PROTEIN 2); structural molecule  note NIFU-LIKE PROTEIN 2 (NFU2); FUNCTIONS IN: structural molecule activity; INVOLVED IN: iron-sulfur cluster assembly, chloroplast organization; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NIF system FeS cluster assembly, NifU, C-terminal (InterPro:IPR001075); BEST Arabidopsis thaliana protein match is: NFU3; structural molecule (TAIR:AT4G25910.1); Has 4447 Blast hits to 4051 proteins in 896 species: Archae - 10; Bacteria - 1936; Metazoa - 127; Fungi - 101; Plants - 142; Viruses - 4; Other Eukaryotes - 2127 (source: NCBI BLink).  protein_id AT5G49940.1p  transcript_id AT5G49940.1  protein_id AT5G49940.1p  transcript_id AT5G49940.1  
At5g49940	chr5:020315464	0.0	W/20315464-20315562,20315680-20315788,20316634-20316955,20317040-20317067	AT5G49940.2  CDS  gene_syn ATCNFU2, CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, K9P8.16, NFU2, NIFU-LIKE PROTEIN 2  gene NFU2  function Encodes a protein containing the NFU domain and functions as a molecular scaffold for iron-sulfur cluster assembly and delivery. Homologous to the cyanobacterial CNFU protein and is targeted to the chloroplast.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|12553879|IDA  go_component chloroplast|GO:0009507|15031412|IDA  go_process chloroplast organization|GO:0009658|15031412|IMP  go_process iron-sulfur cluster assembly|GO:0016226|12553879|IGI  go_process iron-sulfur cluster assembly|GO:0016226|15031412|IMP  go_function structural molecule activity|GO:0005198|12553879|TAS  product NFU2 (NIFU-LIKE PROTEIN 2); structural molecule  note NIFU-LIKE PROTEIN 2 (NFU2); FUNCTIONS IN: structural molecule activity; INVOLVED IN: iron-sulfur cluster assembly, chloroplast organization; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NIF system FeS cluster assembly, NifU, C-terminal (InterPro:IPR001075); BEST Arabidopsis thaliana protein match is: NFU3; structural molecule (TAIR:AT4G25910.1); Has 4101 Blast hits to 4049 proteins in 896 species: Archae - 10; Bacteria - 1705; Metazoa - 127; Fungi - 101; Plants - 155; Viruses - 2; Other Eukaryotes - 2001 (source: NCBI BLink).  protein_id AT5G49940.2p  transcript_id AT5G49940.2  protein_id AT5G49940.2p  transcript_id AT5G49940.2  
At5g49945	chr5:020317418	0.0	W/20317418-20318425,20318914-20319117,20319202-20319432	AT5G49945.1  CDS  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1682 (InterPro:IPR012879); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24330.1); Has 400 Blast hits to 354 proteins in 128 species: Archae - 0; Bacteria - 45; Metazoa - 130; Fungi - 69; Plants - 26; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink).  protein_id AT5G49945.1p  transcript_id AT5G49945.1  protein_id AT5G49945.1p  transcript_id AT5G49945.1  
At5g49950	chr5:020323317	0.0	C/20323317-20323552,20323150-20323239,20322943-20323004,20322750-20322853,20322552-20322641,20322208-20322330,20321929-20322006,20321670-20321755,20321506-20321554,20321367-20321423,20321145-20321275,20320489-20320572,20320313-20320382,20319871-20320224	AT5G49950.1  CDS  gene_syn K9P8.9, K9P8_9  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product embryogenesis-associated protein-related  note embryogenesis-associated protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: esterase/lipase/thioesterase family protein (TAIR:AT1G34340.1); Has 1634 Blast hits to 1634 proteins in 564 species: Archae - 0; Bacteria - 851; Metazoa - 297; Fungi - 122; Plants - 62; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink).  protein_id AT5G49950.1p  transcript_id AT5G49950.1  protein_id AT5G49950.1p  transcript_id AT5G49950.1  
At5g49960	chr5:020327430	0.0	C/20327430-20327687,20327284-20327352,20326605-20327186,20326344-20326526,20326208-20326267,20325918-20326121,20325587-20325832,20325355-20325453,20325063-20325257,20324878-20324970,20324472-20324738,20324173-20324391	AT5G49960.1  CDS  gene_syn K9P8.10, K9P8_10  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  product binding / catalytic  note binding / catalytic; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1012 (InterPro:IPR010420), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G02940.1); Has 571 Blast hits to 558 proteins in 121 species: Archae - 37; Bacteria - 184; Metazoa - 2; Fungi - 0; Plants - 175; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).  protein_id AT5G49960.1p  transcript_id AT5G49960.1  protein_id AT5G49960.1p  transcript_id AT5G49960.1  
At5g49970	chr5:020329213	0.0	W/20329213-20329512,20329605-20329643,20329906-20330073,20330162-20330267,20330443-20330609,20330719-20330961,20331239-20331327,20331772-20331822,20331914-20332004,20332201-20332305,20332399-20332469,20332561-20332656,20332834-20332900	AT5G49970.1  CDS  gene_syn A. THALIANA PYRIDOXIN (PYRODOXAMINE) 5 -PHOSPHATE OXIDASE, ATPPOX, HOMOLOG OF YEAST PYRIDOXINE AUXOTROPHY 3, K9P8.11, K9P8_11, PDX3  gene ATPPOX  function encodes the bifunctional pyridoxine (pyridoxamine) 5 -phosphate oxidase (PPOX)(EC 1.4.3.5) that is involved in the formation of pyridoxal 5 -phosphate (member of the vitamin B6 group)  go_process pyridoxine biosynthetic process|GO:0008615||ISS  go_process pyridoxal metabolic process|GO:0042817|17224143|IGI  go_function pyridoxamine-phosphate oxidase activity|GO:0004733|17224143|IDA  go_function pyridoxamine-phosphate oxidase activity|GO:0004733||ISS  product ATPPOX (A. THALIANA PYRIDOXIN (PYRODOXAMINE) 5 -PHOSPHATE OXIDASE); pyridoxamine-phosphate oxidase  note A. THALIANA PYRIDOXIN (PYRODOXAMINE) 5 -PHOSPHATE OXIDASE (ATPPOX); FUNCTIONS IN: pyridoxamine-phosphate oxidase activity; INVOLVED IN: pyridoxine biosynthetic process, pyridoxal metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: YjeF-related protein, N-terminal (InterPro:IPR004443), Pyridoxamine 5&apos;-phosphate oxidase (InterPro:IPR000659), FMN-binding split barrel (InterPro:IPR012349), Pyridoxamine 5&apos;-phosphate oxidase-related, FMN-binding core (InterPro:IPR011576), FMN-binding split barrel, related (InterPro:IPR009002); Has 6275 Blast hits to 6275 proteins in 1215 species: Archae - 117; Bacteria - 3003; Metazoa - 302; Fungi - 204; Plants - 23; Viruses - 0; Other Eukaryotes - 2626 (source: NCBI BLink).  protein_id AT5G49970.1p  transcript_id AT5G49970.1  protein_id AT5G49970.1p  transcript_id AT5G49970.1  
At5g49970	chr5:020329213	0.0	W/20329213-20329512,20329605-20329643,20329906-20330073,20330162-20330267,20330443-20330609,20330752-20330961,20331239-20331327,20331772-20331822,20331914-20332004,20332201-20332305,20332399-20332473	AT5G49970.2  CDS  gene_syn A. THALIANA PYRIDOXIN (PYRODOXAMINE) 5 -PHOSPHATE OXIDASE, ATPPOX, HOMOLOG OF YEAST PYRIDOXINE AUXOTROPHY 3, K9P8.11, K9P8_11, PDX3  gene ATPPOX  function encodes the bifunctional pyridoxine (pyridoxamine) 5 -phosphate oxidase (PPOX)(EC 1.4.3.5) that is involved in the formation of pyridoxal 5 -phosphate (member of the vitamin B6 group)  go_process pyridoxine biosynthetic process|GO:0008615||ISS  go_process pyridoxal metabolic process|GO:0042817|17224143|IGI  go_function pyridoxamine-phosphate oxidase activity|GO:0004733|17224143|IDA  go_function pyridoxamine-phosphate oxidase activity|GO:0004733||ISS  product ATPPOX (A. THALIANA PYRIDOXIN (PYRODOXAMINE) 5 -PHOSPHATE OXIDASE); pyridoxamine-phosphate oxidase  note A. THALIANA PYRIDOXIN (PYRODOXAMINE) 5 -PHOSPHATE OXIDASE (ATPPOX); FUNCTIONS IN: pyridoxamine-phosphate oxidase activity; INVOLVED IN: pyridoxine biosynthetic process, pyridoxal metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: YjeF-related protein, N-terminal (InterPro:IPR004443), FMN-binding split barrel (InterPro:IPR012349), Pyridoxamine 5&apos;-phosphate oxidase-related, FMN-binding core (InterPro:IPR011576), FMN-binding split barrel, related (InterPro:IPR009002); Has 5911 Blast hits to 5911 proteins in 1204 species: Archae - 117; Bacteria - 2916; Metazoa - 285; Fungi - 204; Plants - 23; Viruses - 0; Other Eukaryotes - 2366 (source: NCBI BLink).  protein_id AT5G49970.2p  transcript_id AT5G49970.2  protein_id AT5G49970.2p  transcript_id AT5G49970.2  
At5g49980	chr5:020335930	0.0	C/20335930-20336531,20335341-20335839,20334420-20335178	AT5G49980.1  CDS  gene_syn AFB5, Auxin F-Box protein 5, K9P8.12, K9P8_12  gene AFB5  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product AFB5 (Auxin F-Box protein 5); ubiquitin-protein ligase  note Auxin F-Box protein 5 (AFB5); FUNCTIONS IN: ubiquitin-protein ligase activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (FBX14) (TAIR:AT4G24390.2); Has 1044 Blast hits to 867 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 326; Fungi - 16; Plants - 643; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT5G49980.1p  transcript_id AT5G49980.1  protein_id AT5G49980.1p  transcript_id AT5G49980.1  
At5g49990	chr5:020341091	0.0	C/20341091-20341187,20340564-20340661,20340300-20340476,20340073-20340173,20339913-20339988,20339767-20339826,20339438-20339622,20339211-20339307,20338883-20338969,20338709-20338767,20338534-20338625,20338374-20338451,20337864-20338243	AT5G49990.1  CDS  gene_syn K9P8.13, K9P8_13  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_function transmembrane transporter activity|GO:0022857||ISS  product xanthine/uracil permease family protein  note xanthine/uracil permease family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xanthine/uracil permease (InterPro:IPR006042), Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: permease, putative (TAIR:AT5G62890.3); Has 4862 Blast hits to 4844 proteins in 939 species: Archae - 37; Bacteria - 3447; Metazoa - 309; Fungi - 92; Plants - 296; Viruses - 1; Other Eukaryotes - 680 (source: NCBI BLink).  protein_id AT5G49990.1p  transcript_id AT5G49990.1  protein_id AT5G49990.1p  transcript_id AT5G49990.1  
At5g50000	chr5:020344712	0.0	C/20344712-20345033,20343992-20344113,20343704-20343900,20343450-20343624,20343242-20343376,20342838-20343044	AT5G50000.1  CDS  gene_syn MPF21.1, MPF21_1  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), ATMRK serine/threonine protein kinase-like (InterPro:IPR015783), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT3G01490.1); Has 93964 Blast hits to 92780 proteins in 3411 species: Archae - 71; Bacteria - 7931; Metazoa - 41722; Fungi - 7883; Plants - 18896; Viruses - 490; Other Eukaryotes - 16971 (source: NCBI BLink).  protein_id AT5G50000.1p  transcript_id AT5G50000.1  protein_id AT5G50000.1p  transcript_id AT5G50000.1  
At5g50012	chr5:020348896	0.0	W/20348896-20348967	AT5G50012.1  CDS  gene_syn CPuORF36, Conserved peptide upstream open reading frame 36  gene CPuORF36  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF36 represents a conserved upstream opening reading frame relative to major ORF AT5G50010.1  product CPuORF36 (Conserved peptide upstream open reading frame 36)  note Conserved peptide upstream open reading frame 36 (CPuORF36); Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G50012.1p  transcript_id AT5G50012.1  protein_id AT5G50012.1p  transcript_id AT5G50012.1  
At5g50011	chr5:020349114	0.0	W/20349114-20349230,20349342-20349380	AT5G50011.1  CDS  gene_syn CPuORF37, Conserved peptide upstream open reading frame 37  gene CPuORF37  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF37 represents a conserved upstream opening reading frame relative to major ORF AT5G50010.1  product CPuORF37 (Conserved peptide upstream open reading frame 37)  note Conserved peptide upstream open reading frame 37 (CPuORF37); BEST Arabidopsis thaliana protein match is: CPuORF43 (Conserved peptide upstream open reading frame 43) (TAIR:AT5G09461.1); Has 4 Blast hits to 4 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50011.1p  transcript_id AT5G50011.1  protein_id AT5G50011.1p  transcript_id AT5G50011.1  
At5g50010	chr5:020349556	0.0	W/20349556-20350491	AT5G50010.1  CDS  gene_syn K9P8.17  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription regulator activity|GO:0030528|12897250|TAS  product transcription factor/ transcription regulator  note transcription factor/ transcription regulator; FUNCTIONS IN: transcription factor activity, transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092); BEST Arabidopsis thaliana protein match is: SAC51 (SUPPRESSOR OF ACAULIS 51); transcription factor/ transcription regulator (TAIR:AT5G64340.1); Has 63 Blast hits to 63 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50010.1p  transcript_id AT5G50010.1  protein_id AT5G50010.1p  transcript_id AT5G50010.1  
At5g50020	chr5:020351591	0.0	W/20351591-20351629,20352266-20352451,20352842-20353120,20353330-20353563,20353639-20354124	AT5G50020.1  CDS  gene_syn MPF21.3, MPF21_3  go_component plasma membrane|GO:0005886|17317660|IDA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc finger (DHHC type) family protein  note zinc finger (DHHC type) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: receptor/ zinc ion binding (TAIR:AT4G24630.1); Has 3792 Blast hits to 3785 proteins in 184 species: Archae - 0; Bacteria - 0; Metazoa - 1903; Fungi - 491; Plants - 389; Viruses - 0; Other Eukaryotes - 1009 (source: NCBI BLink).  protein_id AT5G50020.1p  transcript_id AT5G50020.1  protein_id AT5G50020.1p  transcript_id AT5G50020.1  
At5g50030	chr5:020354666	0.0	W/20354666-20354851,20355072-20355449	AT5G50030.1  CDS  gene_syn MPF21.4, MPF21_4  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: APPB1; enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor (TAIR:AT4G24640.1); Has 29 Blast hits to 29 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50030.1p  transcript_id AT5G50030.1  protein_id AT5G50030.1p  transcript_id AT5G50030.1  
At5g50040	chr5:020357126	0.0	W/20357126-20357302,20357757-20358107	AT5G50040.1  CDS  gene_syn MPF21.5, MPF21_5  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT5G50050.1); Has 23 Blast hits to 23 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50040.1p  transcript_id AT5G50040.1  protein_id AT5G50040.1p  transcript_id AT5G50040.1  
At5g50050	chr5:020360032	0.0	W/20360032-20360208,20360538-20360888	AT5G50050.1  CDS  gene_syn MPF21.6, MPF21_6  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT5G50040.1); Has 22 Blast hits to 22 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50050.1p  transcript_id AT5G50050.1  protein_id AT5G50050.1p  transcript_id AT5G50050.1  
At5g50060	chr5:020362550	0.0	W/20362550-20362699,20363111-20363461	AT5G50060.1  CDS  gene_syn MPF21.7, MPF21_7  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT5G50040.1); Has 23 Blast hits to 23 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50060.1p  transcript_id AT5G50060.1  protein_id AT5G50060.1p  transcript_id AT5G50060.1  
At5g50070	chr5:020364556	0.0	W/20364556-20364753,20365076-20365429	AT5G50070.1  CDS  gene_syn MPF21.8, MPF21_8  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT1G54980.1); Has 24 Blast hits to 24 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50070.1p  transcript_id AT5G50070.1  protein_id AT5G50070.1p  transcript_id AT5G50070.1  
At5g50080	chr5:020365948	0.0	W/20365948-20366011,20366039-20366149,20366348-20366835	AT5G50080.1  CDS  gene_syn MPF21.9, MPF21_9  function encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product DNA binding / transcription factor  note DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor family protein (TAIR:AT2G33710.1); Has 3985 Blast hits to 3767 proteins in 200 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3971; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT5G50080.1p  transcript_id AT5G50080.1  protein_id AT5G50080.1p  transcript_id AT5G50080.1  
At5g50090	chr5:020369961	0.0	W/20369961-20370225,20370587-20370708,20370786-20370878	AT5G50090.1  CDS  gene_syn MPF21.10, MPF21_10  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62900.1); Has 109 Blast hits to 109 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50090.1p  transcript_id AT5G50090.1  protein_id AT5G50090.1p  transcript_id AT5G50090.1  
At5g50090	chr5:020369961	0.0	W/20369961-20370225,20370587-20370708,20370804-20370878	AT5G50090.2  CDS  gene_syn MPF21.10, MPF21_10  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62900.1); Has 99 Blast hits to 99 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50090.2p  transcript_id AT5G50090.2  protein_id AT5G50090.2p  transcript_id AT5G50090.2  
At5g50100	chr5:020371916	0.0	W/20371916-20372039,20372159-20372301,20372389-20372496,20372586-20372642,20372712-20372777,20372862-20372922,20373006-20373052,20373134-20373172	AT5G50100.1  CDS  gene_syn MPF21.11, MPF21_11  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin-like fold (InterPro:IPR012336), Putative thiol-disulphide oxidoreductase DCC (InterPro:IPR007263); Has 598 Blast hits to 598 proteins in 152 species: Archae - 0; Bacteria - 266; Metazoa - 3; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink).  protein_id AT5G50100.1p  transcript_id AT5G50100.1  protein_id AT5G50100.1p  transcript_id AT5G50100.1  
At5g50110	chr5:020373515	0.0	W/20373515-20373763,20374199-20374391,20374487-20374596,20375064-20375142,20375241-20375308,20375483-20375549,20375956-20376068	AT5G50110.1  CDS  gene_syn MPF21.12, MPF21_12  go_process cell cycle|GO:0007049||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell cycle; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glucose inhibited division protein (InterPro:IPR003682); Has 3963 Blast hits to 3963 proteins in 1297 species: Archae - 0; Bacteria - 2754; Metazoa - 2; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 1189 (source: NCBI BLink).  protein_id AT5G50110.1p  transcript_id AT5G50110.1  protein_id AT5G50110.1p  transcript_id AT5G50110.1  
At5g50111	chr5:020376311	0.0	C/20376311-20376942	AT5G50111.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G50120; transducin family protein / WD-40 repeat family protein  
At5g50115	chr5:020379489	0.0	W/20379489-20380548,20380639-20381036	AT5G50115.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: heat shock protein binding / unfolded protein binding (TAIR:AT5G53150.1); Has 295 Blast hits to 186 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 295; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50115.1p  transcript_id AT5G50115.1  protein_id AT5G50115.1p  transcript_id AT5G50115.1  
At5g50120	chr5:020382630	0.0	C/20382630-20383796	AT5G50120.1  CDS  gene_syn MPF21.14, MPF21_14  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: heterotrimeric G-protein complex; EXPRESSED IN: shoot apex, hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT1G24130.1); Has 29372 Blast hits to 15133 proteins in 549 species: Archae - 34; Bacteria - 4167; Metazoa - 12397; Fungi - 6060; Plants - 2541; Viruses - 0; Other Eukaryotes - 4173 (source: NCBI BLink).  protein_id AT5G50120.1p  transcript_id AT5G50120.1  protein_id AT5G50120.1p  transcript_id AT5G50120.1  
At5g50130	chr5:020390066	0.0	W/20390066-20390192,20391428-20391659,20391758-20391837,20391922-20392075,20392208-20392289,20392387-20392474,20392588-20392634,20392844-20393053	AT5G50130.1  CDS  gene_syn MPF21.15, MPF21_15  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT4G24050.1); Has 49645 Blast hits to 49609 proteins in 2061 species: Archae - 302; Bacteria - 28190; Metazoa - 4665; Fungi - 2877; Plants - 1175; Viruses - 0; Other Eukaryotes - 12436 (source: NCBI BLink).  protein_id AT5G50130.1p  transcript_id AT5G50130.1  protein_id AT5G50130.1p  transcript_id AT5G50130.1  
At5g50130	chr5:020390066	0.0	W/20390066-20390192,20391428-20391659,20391758-20391837,20391922-20392075,20392208-20392289,20392387-20392474,20392588-20392634,20392851-20392874	AT5G50130.2  CDS  gene_syn MPF21.15, MPF21_15  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT4G24050.1); Has 49376 Blast hits to 49343 proteins in 2059 species: Archae - 300; Bacteria - 28138; Metazoa - 4621; Fungi - 2865; Plants - 1165; Viruses - 0; Other Eukaryotes - 12287 (source: NCBI BLink).  protein_id AT5G50130.2p  transcript_id AT5G50130.2  protein_id AT5G50130.2p  transcript_id AT5G50130.2  
At5g50136	chr5:020394870	0.0	C/20394870-20395010	AT5G50136.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G50136.1p  transcript_id AT5G50136.1  protein_id AT5G50136.1p  transcript_id AT5G50136.1  
At5g50140	chr5:020395856	0.0	W/20395856-20396437,20397172-20398197	AT5G50140.1  CDS  gene_syn MPF21.16, MPF21_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT1G10340.2); Has 11403 Blast hits to 5729 proteins in 294 species: Archae - 10; Bacteria - 570; Metazoa - 7481; Fungi - 354; Plants - 1490; Viruses - 29; Other Eukaryotes - 1469 (source: NCBI BLink).  protein_id AT5G50140.1p  transcript_id AT5G50140.1  protein_id AT5G50140.1p  transcript_id AT5G50140.1  
At5g50150	chr5:020406157	0.0	C/20406157-20406375,20405989-20406075,20405693-20405905,20405236-20405400,20404666-20404719,20404420-20404566,20402444-20402821	AT5G50150.1  CDS  gene_syn MPF21.18, MPF21_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10750.1); Has 437 Blast hits to 408 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 10; Plants - 423; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50150.1p  transcript_id AT5G50150.1  protein_id AT5G50150.1p  transcript_id AT5G50150.1  
At5g50160	chr5:020415832	0.0	W/20415832-20415988,20416072-20416168,20416250-20416435,20416521-20416758,20416835-20417162,20417246-20417501,20417581-20418311,20418389-20418582	AT5G50160.1  CDS  gene_syn ATFRO8, FERRIC REDUCTION OXIDASE 8, FRO8, K6A12.2, K6A12_2  gene FRO8  function Encodes a ferric chelate reductase that is expressed in shoots and flowers.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component membrane|GO:0016020||ISS  go_function ferric-chelate reductase activity|GO:0000293|16006655|IDA  go_function oxidoreductase activity|GO:0016491||ISS  product FRO8 (FERRIC REDUCTION OXIDASE 8); ferric-chelate reductase/ oxidoreductase  note FERRIC REDUCTION OXIDASE 8 (FRO8); FUNCTIONS IN: oxidoreductase activity, ferric-chelate reductase activity; LOCATED IN: mitochondrion, plasma membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Ferric reductase, NAD binding (InterPro:IPR013121), Cytochrome b245, heavy chain (InterPro:IPR000778), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130); BEST Arabidopsis thaliana protein match is: FRO1 (FERRIC REDUCTION OXIDASE 1); ferric-chelate reductase (TAIR:AT1G01590.1); Has 1857 Blast hits to 1851 proteins in 307 species: Archae - 7; Bacteria - 263; Metazoa - 475; Fungi - 730; Plants - 251; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).  protein_id AT5G50160.1p  transcript_id AT5G50160.1  protein_id AT5G50160.1p  transcript_id AT5G50160.1  
At5g50170	chr5:020421150	0.0	W/20421150-20421504,20422041-20423264,20423349-20423531,20423627-20423910,20424030-20424146,20424299-20424561,20424651-20424825,20424954-20425226,20425315-20425524	AT5G50170.1  CDS  gene_syn K6A12.3, K6A12_3  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein / GRAM domain-containing protein  note C2 domain-containing protein / GRAM domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), GRAM (InterPro:IPR004182), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G03370.1); Has 1363 Blast hits to 1251 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 845; Fungi - 187; Plants - 234; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).  protein_id AT5G50170.1p  transcript_id AT5G50170.1  protein_id AT5G50170.1p  transcript_id AT5G50170.1  
At5g50175	chr5:020428143	0.0	W/20428143-20428481	AT5G50175.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 21 Blast hits to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50175.1p  transcript_id AT5G50175.1  protein_id AT5G50175.1p  transcript_id AT5G50175.1  
At5g50180	chr5:020431116	0.0	W/20431116-20431228,20431469-20431601,20431692-20431887,20432125-20432249,20432333-20432491,20432569-20432883	AT5G50180.1  CDS  gene_syn K6A12.4, K6A12_4  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Tyrosine-protein kinase, ATN1-like (InterPro:IPR015784); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT5G40540.1); Has 92447 Blast hits to 91230 proteins in 3463 species: Archae - 80; Bacteria - 7795; Metazoa - 41161; Fungi - 7826; Plants - 18698; Viruses - 423; Other Eukaryotes - 16464 (source: NCBI BLink).  protein_id AT5G50180.1p  transcript_id AT5G50180.1  protein_id AT5G50180.1p  transcript_id AT5G50180.1  
At5g50190	chr5:020433507	0.0	C/20433507-20434543	AT5G50190.1  ncRNA  gene_syn K6A12.5, K6A12_5  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  note similar to EMB1353 (EMBRYO DEFECTIVE 1353) [Arabidopsis thaliana] (TAIR:AT4G30090.1)  transcript_id AT5G50190.1  
At5g50200	chr5:020436308	0.0	W/20436308-20436309,20436614-20436762,20437054-20437535	AT5G50200.3  CDS  gene_syn ATNRT3.1, K6A12.6, K6A12_6, NITRATE TRANSPORTER 3.1, NRT3.1, WOUND-RESPONSIVE 3, WR3  gene WR3  function Wound-responsive gene 3 (WR3). Encodes a high-affinity nitrate transporter. Up-regulated by nitrate. Involved in jasmonic acid-independent wound signal transduction.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process response to wounding|GO:0009611|9648747|IEP  go_process response to nitrate|GO:0010167|16415212|IEP  go_process nitrate transport|GO:0015706|16415212|IMP  go_function nitrate transmembrane transporter activity|GO:0015112|16415212|IMP  product WR3 (WOUND-RESPONSIVE 3); nitrate transmembrane transporter  note WOUND-RESPONSIVE 3 (WR3); FUNCTIONS IN: nitrate transmembrane transporter activity; INVOLVED IN: nitrate transport, response to nitrate, response to wounding; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Transporter, high affinity nitrate, Nar2 (InterPro:IPR016605); BEST Arabidopsis thaliana protein match is: calcineurin-like phosphoesterase family protein (TAIR:AT4G24730.1); Has 49 Blast hits to 49 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50200.3p  transcript_id AT5G50200.3  protein_id AT5G50200.3p  transcript_id AT5G50200.3  
At5g50200	chr5:020436612	0.0	W/20436612-20436762,20437054-20437535	AT5G50200.1  CDS  gene_syn ATNRT3.1, K6A12.6, K6A12_6, NITRATE TRANSPORTER 3.1, NRT3.1, WOUND-RESPONSIVE 3, WR3  gene WR3  function Wound-responsive gene 3 (WR3). Encodes a high-affinity nitrate transporter. Up-regulated by nitrate. Involved in jasmonic acid-independent wound signal transduction.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process response to wounding|GO:0009611|9648747|IEP  go_process response to nitrate|GO:0010167|16415212|IEP  go_process nitrate transport|GO:0015706|16415212|IMP  go_function nitrate transmembrane transporter activity|GO:0015112|16415212|IMP  product WR3 (WOUND-RESPONSIVE 3); nitrate transmembrane transporter  note WOUND-RESPONSIVE 3 (WR3); FUNCTIONS IN: nitrate transmembrane transporter activity; INVOLVED IN: nitrate transport, response to nitrate, response to wounding; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Transporter, high affinity nitrate, Nar2 (InterPro:IPR016605); BEST Arabidopsis thaliana protein match is: calcineurin-like phosphoesterase family protein (TAIR:AT4G24730.1); Has 49 Blast hits to 49 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50200.1p  transcript_id AT5G50200.1  protein_id AT5G50200.1p  transcript_id AT5G50200.1  
At5g50200	chr5:020436612	0.0	W/20436612-20436762,20437054-20437535	AT5G50200.2  CDS  gene_syn ATNRT3.1, K6A12.6, K6A12_6, NITRATE TRANSPORTER 3.1, NRT3.1, WOUND-RESPONSIVE 3, WR3  gene WR3  function Wound-responsive gene 3 (WR3). Encodes a high-affinity nitrate transporter. Up-regulated by nitrate. Involved in jasmonic acid-independent wound signal transduction.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process response to wounding|GO:0009611|9648747|IEP  go_process response to nitrate|GO:0010167|16415212|IEP  go_process nitrate transport|GO:0015706|16415212|IMP  go_function nitrate transmembrane transporter activity|GO:0015112|16415212|IMP  product WR3 (WOUND-RESPONSIVE 3); nitrate transmembrane transporter  note WOUND-RESPONSIVE 3 (WR3); FUNCTIONS IN: nitrate transmembrane transporter activity; INVOLVED IN: nitrate transport, response to nitrate, response to wounding; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Transporter, high affinity nitrate, Nar2 (InterPro:IPR016605); BEST Arabidopsis thaliana protein match is: calcineurin-like phosphoesterase family protein (TAIR:AT4G24730.1); Has 49 Blast hits to 49 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50200.2p  transcript_id AT5G50200.2  protein_id AT5G50200.2p  transcript_id AT5G50200.2  
At5g50210	chr5:020442803	0.0	W/20442803-20443558,20443898-20444182,20444256-20444474,20444564-20444743,20444819-20445310,20445402-20445563,20445644-20445706	AT5G50210.1  CDS  gene_syn K6A12.7, K6A12_7, OLD5, ONSET OF LEAF DEATH 5, QS, QUINOLINATE SYNTHASE, SUFE3, SULFUR E 3  gene QS  function Encodes an Fe-S binding protein with quinolinate synthase (QS) activity and cysteine desulfurase activator activity. The QS activity was demonstrated by functional complementation of corresponding E. coli mutants and complementation of embryo-lethal phenotypes of the QS homozygous null allele in Arabidopsis. The SufE domain of the protein also stimulates the cysteine desulfurase activity of CpNifS (AT1G08490) in vitro. This protein binds a (4Fe-Su)2+ cluster in its NadA domain and is localized in the chloroplast.  go_component chloroplast|GO:0009507|16698895|IDA  go_process aerobic respiration|GO:0009060|18978034|IMP  go_process NAD biosynthetic process|GO:0009435|16698895|IGI  go_process NAD biosynthetic process|GO:0009435|16698895|IMP  go_process leaf senescence|GO:0010150|16172137|IMP  go_process iron-sulfur cluster assembly|GO:0016226|17452319|IC  go_process positive regulation of sulfur metabolic process|GO:0051176|17452319|IDA  go_process positive regulation of transferase activity|GO:0051347|18978034|IMP  go_function enzyme activator activity|GO:0008047|17452319|IDA  go_function quinolinate synthetase A activity|GO:0008987|16698895|IGI  go_function quinolinate synthetase A activity|GO:0008987|16698895|IMP  go_function protein homodimerization activity|GO:0042803|17452319|IDA  go_function 4 iron, 4 sulfur cluster binding|GO:0051539|17452319|IDA  product QS (QUINOLINATE SYNTHASE); 4 iron, 4 sulfur cluster binding / enzyme activator/ protein homodimerization/ quinolinate synthetase A  note QUINOLINATE SYNTHASE (QS); FUNCTIONS IN: 4 iron, 4 sulfur cluster binding, enzyme activator activity, protein homodimerization activity, quinolinate synthetase A activity; INVOLVED IN: in 6 processes; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Fe-S metabolism associated SufE (InterPro:IPR003808), Quinolinate synthetase A (InterPro:IPR003473); BEST Arabidopsis thaliana protein match is: SUFE2 (SULFUR E 2); enzyme activator (TAIR:AT1G67810.1); Has 4583 Blast hits to 4583 proteins in 1015 species: Archae - 110; Bacteria - 2759; Metazoa - 2; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 1654 (source: NCBI BLink).  protein_id AT5G50210.1p  transcript_id AT5G50210.1  protein_id AT5G50210.1p  transcript_id AT5G50210.1  
At5g50220	chr5:020446849	0.0	C/20446849-20447200,20446068-20446789	AT5G50220.1  CDS  gene_syn K6A12.8, K6A12_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G32420.1); Has 814 Blast hits to 801 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 812; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G50220.1p  transcript_id AT5G50220.1  protein_id AT5G50220.1p  transcript_id AT5G50220.1  
At5g50230	chr5:020450854	0.0	C/20450854-20450855,20450640-20450766,20450024-20450205,20449758-20449953,20448632-20449654	AT5G50230.1  CDS  gene_syn K6A12.9, K6A12_9  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_process multicellular organismal development|GO:0007275|10402673|ISS  go_function nucleotide binding|GO:0000166||ISS  product nucleotide binding  note nucleotide binding; FUNCTIONS IN: nucleotide binding; INVOLVED IN: multicellular organismal development; LOCATED IN: heterotrimeric G-protein complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), Autophagy protein 16 (InterPro:IPR013923); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G49660.1); Has 57187 Blast hits to 26367 proteins in 807 species: Archae - 96; Bacteria - 6217; Metazoa - 26789; Fungi - 10347; Plants - 4738; Viruses - 23; Other Eukaryotes - 8977 (source: NCBI BLink).  protein_id AT5G50230.1p  transcript_id AT5G50230.1  protein_id AT5G50230.1p  transcript_id AT5G50230.1  
At5g50240	chr5:020451251	0.0	W/20451251-20451493,20451632-20451902,20451978-20452142,20452211-20452461	AT5G50240.1  CDS  gene_syn K6A12.10, K6A12_10, PIMT2, PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 2  gene PIMT2  function L-isoaspartyl methyltransferase 2 (PIMT2)gene, alternatively spliced.  go_process protein modification process|GO:0006464||IEA  go_function protein-L-isoaspartate (D-aspartate) O-methyltransferase activity|GO:0004719||IEA  go_component cellular_component|GO:0005575||ND  go_process protein modification process|GO:0006464||ISS  go_function protein-L-isoaspartate (D-aspartate) O-methyltransferase activity|GO:0004719||ISS  product PIMT2 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 2); protein-L-isoaspartate (D-aspartate) O-methyltransferase  note PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 2 (PIMT2); FUNCTIONS IN: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (InterPro:IPR000682); BEST Arabidopsis thaliana protein match is: PIMT1 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 1); protein-L-isoaspartate (D-aspartate) O-methyltransferase (TAIR:AT3G48330.2); Has 3821 Blast hits to 3820 proteins in 912 species: Archae - 222; Bacteria - 2221; Metazoa - 286; Fungi - 59; Plants - 63; Viruses - 0; Other Eukaryotes - 970 (source: NCBI BLink).  protein_id AT5G50240.1p  transcript_id AT5G50240.1  protein_id AT5G50240.1p  transcript_id AT5G50240.1  
At5g50240	chr5:020451251	0.0	W/20451251-20451493,20451641-20451902,20451978-20452142,20452211-20452461	AT5G50240.2  CDS  gene_syn K6A12.10, K6A12_10, PIMT2, PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 2  gene PIMT2  function L-isoaspartyl methyltransferase 2 (PIMT2)gene, alternatively spliced.  go_process protein modification process|GO:0006464||IEA  go_function protein-L-isoaspartate (D-aspartate) O-methyltransferase activity|GO:0004719||IEA  go_component cellular_component|GO:0005575||ND  go_process protein modification process|GO:0006464||ISS  go_function protein-L-isoaspartate (D-aspartate) O-methyltransferase activity|GO:0004719||ISS  product PIMT2 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 2); protein-L-isoaspartate (D-aspartate) O-methyltransferase  note PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 2 (PIMT2); FUNCTIONS IN: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (InterPro:IPR000682); BEST Arabidopsis thaliana protein match is: PIMT1 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 1); protein-L-isoaspartate (D-aspartate) O-methyltransferase (TAIR:AT3G48330.2); Has 3822 Blast hits to 3821 proteins in 912 species: Archae - 222; Bacteria - 2221; Metazoa - 286; Fungi - 59; Plants - 63; Viruses - 0; Other Eukaryotes - 971 (source: NCBI BLink).  protein_id AT5G50240.2p  transcript_id AT5G50240.2  protein_id AT5G50240.2p  transcript_id AT5G50240.2  
At5g50240	chr5:020451671	0.0	W/20451671-20451902,20451978-20452142,20452211-20452461	AT5G50240.3  CDS  gene_syn K6A12.10, K6A12_10, PIMT2, PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 2  gene PIMT2  function L-isoaspartyl methyltransferase 2 (PIMT2)gene, alternatively spliced.  go_process protein modification process|GO:0006464||IEA  go_function protein-L-isoaspartate (D-aspartate) O-methyltransferase activity|GO:0004719||IEA  go_component cellular_component|GO:0005575||ND  go_process protein modification process|GO:0006464||ISS  go_function protein-L-isoaspartate (D-aspartate) O-methyltransferase activity|GO:0004719||ISS  product PIMT2 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 2); protein-L-isoaspartate (D-aspartate) O-methyltransferase  note PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 2 (PIMT2); FUNCTIONS IN: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (InterPro:IPR000682); BEST Arabidopsis thaliana protein match is: PIMT1 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 1); protein-L-isoaspartate (D-aspartate) O-methyltransferase (TAIR:AT3G48330.2); Has 3820 Blast hits to 3820 proteins in 911 species: Archae - 222; Bacteria - 2226; Metazoa - 289; Fungi - 59; Plants - 62; Viruses - 0; Other Eukaryotes - 962 (source: NCBI BLink).  protein_id AT5G50240.3p  transcript_id AT5G50240.3  protein_id AT5G50240.3p  transcript_id AT5G50240.3  
At5g50250	chr5:020453537	0.0	C/20453537-20453965,20453189-20453290,20452820-20453101,20452677-20452733	AT5G50250.1  CDS  gene_syn K6A12.11, K6A12_11  function Encodes a RNA binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process innate immune response|GO:0045087|17450127|IDA  go_function RNA binding|GO:0003723||ISS  go_function poly(U) binding|GO:0008266|17511964|IDA  product 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative  note 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative; FUNCTIONS IN: RNA binding, poly(U) binding; INVOLVED IN: innate immune response; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding (TAIR:AT4G24770.1); Has 31838 Blast hits to 17858 proteins in 647 species: Archae - 20; Bacteria - 2275; Metazoa - 17447; Fungi - 3576; Plants - 4719; Viruses - 0; Other Eukaryotes - 3801 (source: NCBI BLink).  protein_id AT5G50250.1p  transcript_id AT5G50250.1  protein_id AT5G50250.1p  transcript_id AT5G50250.1  
At5g50260	chr5:020455605	0.0	W/20455605-20456046,20456134-20456510,20456596-20456862	AT5G50260.1  CDS  gene_syn K6A12.12, K6A12_12  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product cysteine proteinase, putative  note cysteine proteinase, putative; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: cysteine proteinase, putative (TAIR:AT3G48350.1); Has 6223 Blast hits to 6164 proteins in 596 species: Archae - 34; Bacteria - 115; Metazoa - 2837; Fungi - 4; Plants - 1259; Viruses - 123; Other Eukaryotes - 1851 (source: NCBI BLink).  protein_id AT5G50260.1p  transcript_id AT5G50260.1  protein_id AT5G50260.1p  transcript_id AT5G50260.1  
At5g50270	chr5:020457487	0.0	W/20457487-20458272,20458420-20458554,20458649-20458873	AT5G50270.1  CDS  gene_syn K6A12.13, K6A12_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G32375.1); Has 1242 Blast hits to 1213 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1240; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G50270.1p  transcript_id AT5G50270.1  protein_id AT5G50270.1p  transcript_id AT5G50270.1  
At5g50280	chr5:020459238	0.0	W/20459238-20460100,20460196-20461504	AT5G50280.1  CDS  gene_syn EMB1006, K6A12.14, K6A12_14, embryo defective 1006  gene EMB1006  go_component chloroplast|GO:0009507||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product EMB1006 (embryo defective 1006)  note embryo defective 1006 (EMB1006); INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G02860.1); Has 20583 Blast hits to 5925 proteins in 182 species: Archae - 4; Bacteria - 20; Metazoa - 614; Fungi - 511; Plants - 18438; Viruses - 0; Other Eukaryotes - 996 (source: NCBI BLink).  protein_id AT5G50280.1p  transcript_id AT5G50280.1  protein_id AT5G50280.1p  transcript_id AT5G50280.1  
At5g50290	chr5:020461814	0.0	W/20461814-20462207,20462705-20463115,20463694-20463744,20463841-20463896	AT5G50290.1  CDS  gene_syn K6A12.15, K6A12_15  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17350.1); Has 174 Blast hits to 174 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 174; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50290.1p  transcript_id AT5G50290.1  protein_id AT5G50290.1p  transcript_id AT5G50290.1  
At5g50300	chr5:020466492	0.0	C/20466492-20468084	AT5G50300.1  CDS  gene_syn K6A12.16, K6A12_16  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||IEA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product xanthine/uracil/vitamin C permease family protein  note xanthine/uracil/vitamin C permease family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: xanthine/uracil permease family protein (TAIR:AT3G10960.1); Has 5226 Blast hits to 5226 proteins in 1025 species: Archae - 48; Bacteria - 3306; Metazoa - 16; Fungi - 80; Plants - 46; Viruses - 0; Other Eukaryotes - 1730 (source: NCBI BLink).  protein_id AT5G50300.1p  transcript_id AT5G50300.1  protein_id AT5G50300.1p  transcript_id AT5G50300.1  
At5g50310	chr5:020474562	0.0	W/20474562-20474693,20474916-20475002,20475105-20475173,20475278-20475410,20475495-20475541,20475636-20475722,20476173-20476234,20476528-20476570,20476670-20476750,20476836-20476949,20477146-20477251,20477333-20477396,20477567-20477609,20477775-20478011,20478102-20478263,20478359-20478487,20478578-20478727,20478823-20478909,20479012-20479080,20479183-20479281	AT5G50310.1  CDS  gene_syn MXI22.1, MXI22_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing protein  note kelch repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74150.1); Has 12804 Blast hits to 6183 proteins in 316 species: Archae - 14; Bacteria - 848; Metazoa - 5311; Fungi - 1408; Plants - 1187; Viruses - 186; Other Eukaryotes - 3850 (source: NCBI BLink).  protein_id AT5G50310.1p  transcript_id AT5G50310.1  protein_id AT5G50310.1p  transcript_id AT5G50310.1  
At5g50315	chr5:020479591	0.0	W/20479591-20481077	AT5G50315.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 5.0e-14 P-value blast match to Q9XE24 /118-277 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At5g50320	chr5:020484336	0.0	C/20484336-20484811,20483709-20483778,20483438-20483610,20482960-20483134,20482607-20482773,20482308-20482527,20482112-20482216,20481448-20481600,20481200-20481358	AT5G50320.1  CDS  gene_syn ELO3, ELONGATA 3, HAC8, HAG3, HISTONE ACETYLTRANSFERASE 8, HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 3, MXI22.3, MXI22_3  gene ELO3  function A subunit of Elongator, a histone acetyl transferase complex, consisting of six subunits (ELP1 ELP6), that copurifies with the elongating RNAPII in yeast and humans. Three Arabidopsis thaliana genes, encoding homologs of the yeast Elongator subunits ELP1, ELP3 (histone acetyl transferase), and ELP4 are responsible for the narrow leaf phenotype in elongata mutants and for reduced root growth that results from a decreased cell division rate. Two lines with RNAi constructs directed against HAG3 grow normally and can produce root calli, but have defects in agrobacterium-mediated transformation.  go_process cell proliferation|GO:0008283|15894610|IMP  go_process DNA mediated transformation|GO:0009294|17827277|IMP  go_process organ growth|GO:0035265|15894610|IMP  go_function histone acetyltransferase activity|GO:0004402|12466527|ISS  product ELO3 (ELONGATA 3); histone acetyltransferase  note ELONGATA 3 (ELO3); FUNCTIONS IN: histone acetyltransferase activity; INVOLVED IN: cell proliferation, DNA mediated transformation, organ growth; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Histone acetyltransferase ELP3 (InterPro:IPR005910), Radical SAM (InterPro:IPR007197), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 1777 Blast hits to 1760 proteins in 661 species: Archae - 124; Bacteria - 1095; Metazoa - 129; Fungi - 88; Plants - 29; Viruses - 0; Other Eukaryotes - 312 (source: NCBI BLink).  protein_id AT5G50320.1p  transcript_id AT5G50320.1  protein_id AT5G50320.1p  transcript_id AT5G50320.1  
At5g50330	chr5:020488450	0.0	C/20488450-20488563,20488224-20488352,20487942-20488136,20487433-20487561,20487230-20487354,20486938-20487048,20486649-20486757,20486411-20486529,20485805-20485958,20485556-20485703,20485406-20485464	AT5G50330.2  CDS  gene_syn MXI22.4, MXI22_4  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ABC1 family protein (TAIR:AT4G24810.2); Has 6571 Blast hits to 6564 proteins in 1101 species: Archae - 67; Bacteria - 2621; Metazoa - 344; Fungi - 348; Plants - 348; Viruses - 10; Other Eukaryotes - 2833 (source: NCBI BLink).  protein_id AT5G50330.2p  transcript_id AT5G50330.2  protein_id AT5G50330.2p  transcript_id AT5G50330.2  
At5g50330	chr5:020488450	0.0	C/20488450-20488563,20488224-20488352,20487942-20488136,20487662-20487709,20487433-20487561,20487230-20487354,20486938-20487048,20486649-20486757,20486411-20486529,20485805-20485958,20485556-20485703,20485406-20485464	AT5G50330.1  CDS  gene_syn MXI22.4, MXI22_4  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  product ATP binding / protein kinase  note ATP binding / protein kinase; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase, core (InterPro:IPR000719), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ABC1 family protein (TAIR:AT4G24810.2); Has 6935 Blast hits to 6926 proteins in 1103 species: Archae - 67; Bacteria - 2625; Metazoa - 354; Fungi - 354; Plants - 343; Viruses - 14; Other Eukaryotes - 3178 (source: NCBI BLink).  protein_id AT5G50330.1p  transcript_id AT5G50330.1  protein_id AT5G50330.1p  transcript_id AT5G50330.1  
At5g50335	chr5:020489391	0.0	C/20489391-20489615	AT5G50335.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50335.1p  transcript_id AT5G50335.1  protein_id AT5G50335.1p  transcript_id AT5G50335.1  
At5g50340	chr5:020495253	0.0	C/20495253-20495830,20495104-20495159,20494972-20495030,20494770-20494841,20494323-20494406,20493967-20494074,20493633-20493695,20493464-20493544,20493203-20493268,20492817-20492972,20492477-20492554,20492318-20492356,20492065-20492147,20491874-20491946,20491635-20491802	AT5G50340.1  CDS  gene_syn MXI22.5, MXI22_5  go_process DNA repair|GO:0006281||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function damaged DNA binding|GO:0003684||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component cellular_component|GO:0005575||ND  product ATP binding / damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding  note ATP binding / damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding; FUNCTIONS IN: damaged DNA binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA repair protein RadA (InterPro:IPR004504), ATPase, AAA+ type, core (InterPro:IPR003593); Has 4956 Blast hits to 4948 proteins in 1255 species: Archae - 111; Bacteria - 3126; Metazoa - 7; Fungi - 0; Plants - 24; Viruses - 6; Other Eukaryotes - 1682 (source: NCBI BLink).  protein_id AT5G50340.1p  transcript_id AT5G50340.1  protein_id AT5G50340.1p  transcript_id AT5G50340.1  
At5g50345	chr5:020497401	0.0	W/20497401-20497467,20497545-20497744	AT5G50345.1  CDS  function Encodes a Maternally expressed gene (MEG) family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10747.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50345.1p  transcript_id AT5G50345.1  protein_id AT5G50345.1p  transcript_id AT5G50345.1  
At5g50350	chr5:020500940	0.0	C/20500940-20501611,20500353-20500520,20500063-20500161,20499680-20499799,20499453-20499590,20499031-20499360,20498697-20498924	AT5G50350.1  CDS  gene_syn MXI22.6, MXI22_6  go_component chloroplast|GO:0009507||IEA  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 4495 Blast hits to 2852 proteins in 293 species: Archae - 3; Bacteria - 554; Metazoa - 2480; Fungi - 333; Plants - 121; Viruses - 15; Other Eukaryotes - 989 (source: NCBI BLink).  protein_id AT5G50350.1p  transcript_id AT5G50350.1  protein_id AT5G50350.1p  transcript_id AT5G50350.1  
At5g50360	chr5:020505433	0.0	C/20505433-20506308	AT5G50360.1  CDS  gene_syn MXI22.7, MXI22_7  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: stem, male gametophyte, flower, stamen; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G63350.1); Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G50360.1p  transcript_id AT5G50360.1  protein_id AT5G50360.1p  transcript_id AT5G50360.1  
At5g50361	chr5:020506381	0.0	C/20506381-20506578	AT5G50361.1  CDS  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G50361.1p  transcript_id AT5G50361.1  protein_id AT5G50361.1p  transcript_id AT5G50361.1  
At5g50370	chr5:020510511	0.0	C/20510511-20510631,20510001-20510266,20509746-20509913,20509559-20509648,20509382-20509483	AT5G50370.1  CDS  gene_syn MXI22.8, MXI22_8  go_component mitochondrion|GO:0005739|15276431|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_process anaerobic respiration|GO:0009061||IEA  go_process nucleotide metabolic process|GO:0009117||IEA  go_function adenylate kinase activity|GO:0004017||IEA  go_function ATP binding|GO:0005524||IEA  go_function phosphotransferase activity, phosphate group as acceptor|GO:0016776||IEA  go_function nucleotide kinase activity|GO:0019201||IEA  go_function nucleobase, nucleoside, nucleotide kinase activity|GO:0019205||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_function adenylate kinase activity|GO:0004017||ISS  product adenylate kinase, putative  note adenylate kinase, putative; FUNCTIONS IN: nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, adenylate kinase activity, ATP binding, phosphotransferase activity, phosphate group as acceptor; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process; LOCATED IN: mitochondrion, plasma membrane, plastid; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adenylate kinase, zinc-finger lid region (InterPro:IPR007862), Adenylate kinase, subfamily (InterPro:IPR006259), Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: ADK1 (ADENYLATE KINASE 1); ATP binding / adenylate kinase/ nucleobase, nucleoside, nucleotide kinase/ nucleotide kinase/ phosphotransferase, phosphate group as acceptor (TAIR:AT5G63400.1); Has 8866 Blast hits to 8737 proteins in 1855 species: Archae - 61; Bacteria - 4516; Metazoa - 1039; Fungi - 291; Plants - 250; Viruses - 0; Other Eukaryotes - 2709 (source: NCBI BLink).  protein_id AT5G50370.1p  transcript_id AT5G50370.1  protein_id AT5G50370.1p  transcript_id AT5G50370.1  
At5g50375	chr5:020511856	0.0	W/20511856-20511862,20511948-20512078,20512329-20512412,20512564-20512605,20512756-20512866,20512955-20513146,20513350-20513447,20513754-20513931	AT5G50375.1  CDS  gene_syn CPI1, CYCLOEUCALENOL CYCLOISOMERASE, CYCLOPROPYL ISOMERASE  gene CPI1  function Converts pentacyclic cyclopropyl sterols to conventional tetracyclic sterols. CPI1 function during and just after division and support gravitropism by establishing polar PIN2 localization. Required for endocytosis of PIN2  go_component endoplasmic reticulum|GO:0005783|18223643|IDA  go_process cytokinesis|GO:0000910|18223643|IMP  go_process pinocytosis|GO:0006907|18223643|IMP  go_process positive gravitropism|GO:0009958|18223643|IMP  go_process sterol biosynthetic process|GO:0016126|10788449|TAS  go_function cycloeucalenol cycloisomerase activity|GO:0047793|10788449|IDA  product CPI1 (CYCLOPROPYL ISOMERASE); cycloeucalenol cycloisomerase  note CYCLOPROPYL ISOMERASE (CPI1); FUNCTIONS IN: cycloeucalenol cycloisomerase activity; INVOLVED IN: pinocytosis, positive gravitropism, sterol biosynthetic process, cytokinesis; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; Has 30 Blast hits to 30 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 3; Plants - 19; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G50375.1p  transcript_id AT5G50375.1  protein_id AT5G50375.1p  transcript_id AT5G50375.1  
At5g50380	chr5:020516382	0.0	C/20516382-20518433	AT5G50380.1  CDS  gene_syn ATEXO70F1, MXI22.10, MXI22_10, exocyst subunit EXO70 family protein F1  gene ATEXO70F1  function A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process exocytosis|GO:0006887||IEA  go_component exocyst|GO:0000145||ISS  go_process vesicle docking during exocytosis|GO:0006904||ISS  go_function protein binding|GO:0005515||ISS  product ATEXO70F1 (exocyst subunit EXO70 family protein F1); protein binding  note exocyst subunit EXO70 family protein F1 (ATEXO70F1); FUNCTIONS IN: protein binding; INVOLVED IN: exocytosis, vesicle docking during exocytosis; LOCATED IN: plasma membrane, exocyst; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: ATEXO70D2 (exocyst subunit EXO70 family protein D2); protein binding (TAIR:AT1G54090.1); Has 607 Blast hits to 605 proteins in 106 species: Archae - 0; Bacteria - 2; Metazoa - 116; Fungi - 85; Plants - 391; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT5G50380.1p  transcript_id AT5G50380.1  protein_id AT5G50380.1p  transcript_id AT5G50380.1  
At5g50390	chr5:020521206	0.0	C/20521206-20522980,20520789-20521119	AT5G50390.1  CDS  gene_syn MXI22.11, MXI22_11  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G23330.1); Has 13594 Blast hits to 4870 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 36; Fungi - 34; Plants - 13330; Viruses - 0; Other Eukaryotes - 194 (source: NCBI BLink).  protein_id AT5G50390.1p  transcript_id AT5G50390.1  protein_id AT5G50390.1p  transcript_id AT5G50390.1  
At5g50400	chr5:020526061	0.0	C/20526061-20526231,20525846-20525937,20525681-20525747,20525481-20525600,20525303-20525395,20525080-20525209,20524917-20524998,20524687-20524819,20524393-20524598,20523575-20524316	AT5G50400.1  CDS  gene_syn ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, ATPAP27, MXI22.12, MXI22_12, PAP27, PURPLE ACID PHOSPHATASE 27  gene PAP27  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function acid phosphatase activity|GO:0003993|16244908|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PAP27 (PURPLE ACID PHOSPHATASE 27); acid phosphatase/ protein serine/threonine phosphatase  note PURPLE ACID PHOSPHATASE 27 (PAP27); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Purple acid phosphatase, N-terminal (InterPro:IPR015914), Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: PAP24 (PURPLE ACID PHOSPHATASE 24); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT4G24890.1); Has 985 Blast hits to 977 proteins in 173 species: Archae - 0; Bacteria - 156; Metazoa - 174; Fungi - 58; Plants - 412; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink).  protein_id AT5G50400.1p  transcript_id AT5G50400.1  protein_id AT5G50400.1p  transcript_id AT5G50400.1  
At5g50410	chr5:020529502	0.0	C/20529502-20529816,20529175-20529417,20529015-20529093,20528596-20528674,20528446-20528509	AT5G50410.1  CDS  gene_syn MXI22.13, MXI22_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50410.1p  transcript_id AT5G50410.1  protein_id AT5G50410.1p  transcript_id AT5G50410.1  
At5g50420	chr5:020531362	0.0	C/20531362-20532635,20530849-20531098,20530453-20530629	AT5G50420.1  CDS  gene_syn MXI22.14, MXI22_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17270.1); Has 53 Blast hits to 53 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G50420.1p  transcript_id AT5G50420.1  protein_id AT5G50420.1p  transcript_id AT5G50420.1  
At5g50423	chr5:020533342	0.0	C/20533342-20533390,20532985-20533241	AT5G50423.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48605.1); Has 11 Blast hits to 11 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50423.1p  transcript_id AT5G50423.1  protein_id AT5G50423.1p  transcript_id AT5G50423.1  
At5g50430	chr5:020536251	0.0	C/20536251-20536307,20535992-20536046,20535446-20535509,20535290-20535351,20535154-20535193,20535031-20535058,20534773-20534864,20534366-20534660	AT5G50430.3  CDS  gene_syn MXI22.15, MXI22_15, UBC33, ubiquitin-conjugating enzyme 33  gene UBC33  go_process post-translational protein modification|GO:0043687||IEA  go_process regulation of protein metabolic process|GO:0051246||IEA  go_component cellular_component|GO:0005575||ND  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC33 (ubiquitin-conjugating enzyme 33); ubiquitin-protein ligase  note ubiquitin-conjugating enzyme 33 (UBC33); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: regulation of protein metabolic process, post-translational protein modification; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC34 (ubiquitin-conjugating enzyme 34); ubiquitin-protein ligase (TAIR:AT1G17280.2); Has 3072 Blast hits to 3070 proteins in 255 species: Archae - 0; Bacteria - 0; Metazoa - 1479; Fungi - 562; Plants - 517; Viruses - 13; Other Eukaryotes - 501 (source: NCBI BLink).  protein_id AT5G50430.3p  transcript_id AT5G50430.3  protein_id AT5G50430.3p  transcript_id AT5G50430.3  
At5g50430	chr5:020536251	0.0	C/20536251-20536307,20535992-20536046,20535596-20535634,20535446-20535509,20535290-20535351,20535154-20535193,20535031-20535058,20534773-20534864,20534366-20534660	AT5G50430.1  CDS  gene_syn MXI22.15, MXI22_15, UBC33, ubiquitin-conjugating enzyme 33  gene UBC33  go_process post-translational protein modification|GO:0043687||IEA  go_process regulation of protein metabolic process|GO:0051246||IEA  go_component cellular_component|GO:0005575||ND  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC33 (ubiquitin-conjugating enzyme 33); ubiquitin-protein ligase  note ubiquitin-conjugating enzyme 33 (UBC33); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: regulation of protein metabolic process, post-translational protein modification; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC34 (ubiquitin-conjugating enzyme 34); ubiquitin-protein ligase (TAIR:AT1G17280.2); Has 5716 Blast hits to 5712 proteins in 289 species: Archae - 0; Bacteria - 0; Metazoa - 2721; Fungi - 1107; Plants - 897; Viruses - 19; Other Eukaryotes - 972 (source: NCBI BLink).  protein_id AT5G50430.1p  transcript_id AT5G50430.1  protein_id AT5G50430.1p  transcript_id AT5G50430.1  
At5g50430	chr5:020536251	0.0	C/20536251-20536307,20535992-20536046,20535596-20535634,20535446-20535509,20535290-20535351,20535154-20535193,20535031-20535058,20534773-20534864,20534366-20534660	AT5G50430.2  CDS  gene_syn MXI22.15, MXI22_15, UBC33, ubiquitin-conjugating enzyme 33  gene UBC33  go_process post-translational protein modification|GO:0043687||IEA  go_process regulation of protein metabolic process|GO:0051246||IEA  go_component cellular_component|GO:0005575||ND  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC33 (ubiquitin-conjugating enzyme 33); ubiquitin-protein ligase  note ubiquitin-conjugating enzyme 33 (UBC33); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: regulation of protein metabolic process, post-translational protein modification; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC34 (ubiquitin-conjugating enzyme 34); ubiquitin-protein ligase (TAIR:AT1G17280.2); Has 5716 Blast hits to 5712 proteins in 289 species: Archae - 0; Bacteria - 0; Metazoa - 2721; Fungi - 1107; Plants - 897; Viruses - 19; Other Eukaryotes - 972 (source: NCBI BLink).  protein_id AT5G50430.2p  transcript_id AT5G50430.2  protein_id AT5G50430.2p  transcript_id AT5G50430.2  
At5g50440	chr5:020538226	0.0	C/20538226-20538452,20537880-20538150,20537644-20537805	AT5G50440.1  CDS  gene_syn ATMEMB12, MEMB12, MEMBRIN 12, MXI22.16, MXI22_16  gene MEMB12  function member of Membrin Gene Family  go_component integral to membrane|GO:0016021|10831610|TAS  go_process intra-Golgi vesicle-mediated transport|GO:0006891||ISS  go_process membrane fusion|GO:0006944|10831610|IPI  go_function SNAP receptor activity|GO:0005484||ISS  product MEMB12 (MEMBRIN 12); SNAP receptor  note MEMBRIN 12 (MEMB12); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion, intra-Golgi vesicle-mediated transport; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vesicle transport v-SNARE (InterPro:IPR007705); BEST Arabidopsis thaliana protein match is: MEMB11 (MEMBRIN 11); SNAP receptor (TAIR:AT2G36900.1); Has 315 Blast hits to 315 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 142; Fungi - 67; Plants - 63; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT5G50440.1p  transcript_id AT5G50440.1  protein_id AT5G50440.1p  transcript_id AT5G50440.1  
At5g50450	chr5:020544541	0.0	C/20544541-20544698,20544293-20544455,20543519-20544208	AT5G50450.1  CDS  gene_syn MXI22.17, MXI22_17  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product zinc finger (MYND type) family protein  note zinc finger (MYND type) family protein; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: zinc finger (MYND type) family protein / F-box family protein (TAIR:AT1G67340.1); Has 341 Blast hits to 328 proteins in 91 species: Archae - 0; Bacteria - 66; Metazoa - 65; Fungi - 87; Plants - 79; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT5G50450.1p  transcript_id AT5G50450.1  protein_id AT5G50450.1p  transcript_id AT5G50450.1  
At5g50460	chr5:020552416	0.0	C/20552416-20552509,20552168-20552283	AT5G50460.1  CDS  gene_syn MBA10.8  go_component membrane|GO:0016020||IEA  go_process protein targeting|GO:0006605||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process protein transport|GO:0015031||IEA  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||IEA  go_process protein targeting|GO:0006605||ISS  go_process intracellular protein transport|GO:0006886||ISS  product protein transport protein SEC61 gamma subunit, putative  note protein transport protein SEC61 gamma subunit, putative; FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, protein transport, protein targeting; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein translocase SEC61 complex gamma subunit (InterPro:IPR008158), Protein secE/sec61-gamma protein (InterPro:IPR001901); BEST Arabidopsis thaliana protein match is: protein transport protein SEC61 gamma subunit, putative (TAIR:AT4G24920.1); Has 409 Blast hits to 409 proteins in 150 species: Archae - 2; Bacteria - 0; Metazoa - 186; Fungi - 85; Plants - 66; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT5G50460.1p  transcript_id AT5G50460.1  protein_id AT5G50460.1p  transcript_id AT5G50460.1  
At5g50470	chr5:020555120	0.0	C/20555120-20555758	AT5G50470.1  CDS  gene_syn MBA10.2, MBA10_2, NF-YC7, NUCLEAR FACTOR Y, SUBUNIT C7  gene NF-YC7  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YC7 (NUCLEAR FACTOR Y, SUBUNIT C7); DNA binding / transcription factor  note NUCLEAR FACTOR Y, SUBUNIT C7 (NF-YC7); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: NF-YC6 (NUCLEAR FACTOR Y, SUBUNIT C6); DNA binding / transcription factor (TAIR:AT5G50480.1); Has 730 Blast hits to 730 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 299; Fungi - 149; Plants - 224; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT5G50470.1p  transcript_id AT5G50470.1  protein_id AT5G50470.1p  transcript_id AT5G50470.1  
At5g50480	chr5:020557856	0.0	C/20557856-20558464	AT5G50480.1  CDS  gene_syn MBA10.3, MBA10_3, NF-YC6, NUCLEAR FACTOR Y, SUBUNIT C6  gene NF-YC6  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YC6 (NUCLEAR FACTOR Y, SUBUNIT C6); DNA binding / transcription factor  note NUCLEAR FACTOR Y, SUBUNIT C6 (NF-YC6); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: NF-YC1 (NUCLEAR FACTOR Y, SUBUNIT C1); DNA binding / transcription activator/ transcription factor (TAIR:AT3G48590.1); Has 906 Blast hits to 906 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 364; Fungi - 213; Plants - 251; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT5G50480.1p  transcript_id AT5G50480.1  protein_id AT5G50480.1p  transcript_id AT5G50480.1  
At5g50490	chr5:020560610	0.0	C/20560610-20561170	AT5G50490.1  CDS  gene_syn MBA10.4, MBA10_4, NF-YC5, NUCLEAR FACTOR Y, SUBUNIT C5  gene NF-YC5  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YC5 (NUCLEAR FACTOR Y, SUBUNIT C5); DNA binding / transcription factor  note NUCLEAR FACTOR Y, SUBUNIT C5 (NF-YC5); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: NF-YC8 (NUCLEAR FACTOR Y, SUBUNIT C8); DNA binding / transcription factor (TAIR:AT5G27910.1); Has 851 Blast hits to 851 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 342; Fungi - 191; Plants - 244; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT5G50490.1p  transcript_id AT5G50490.1  protein_id AT5G50490.1p  transcript_id AT5G50490.1  
At5g50500	chr5:020562150	0.0	C/20562150-20562557	AT5G50500.1  CDS  gene_syn MBA10.5, MBA10_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50500.1p  transcript_id AT5G50500.1  protein_id AT5G50500.1p  transcript_id AT5G50500.1  
At5g50510	chr5:020567386	0.0	C/20567386-20568075	AT5G50510.1  CDS  gene_syn MBA10.7, MBA10_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G50620.1); Has 119 Blast hits to 119 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 119; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50510.1p  transcript_id AT5G50510.1  protein_id AT5G50510.1p  transcript_id AT5G50510.1  
At5g50520	chr5:020571246	0.0	C/20571246-20571587,20570235-20571049,20569680-20570145	AT5G50520.1  CDS  gene_syn MBA10.15, MBA10_15  go_component endomembrane system|GO:0012505||IEA  product nodulin family protein  note nodulin family protein; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nodulin family protein (TAIR:AT5G50630.1); Has 1819 Blast hits to 1753 proteins in 484 species: Archae - 9; Bacteria - 868; Metazoa - 11; Fungi - 200; Plants - 319; Viruses - 0; Other Eukaryotes - 412 (source: NCBI BLink).  protein_id AT5G50520.1p  transcript_id AT5G50520.1  protein_id AT5G50520.1p  transcript_id AT5G50520.1  
At5g50530	chr5:020574771	0.0	C/20574771-20574922,20574481-20574661,20574261-20574393,20574019-20574189,20573843-20573921,20573611-20573724,20573420-20573486,20573156-20573261,20573007-20573065,20572748-20572857,20572551-20572669,20572373-20572458,20572202-20572291,20571876-20572055	AT5G50530.1  CDS  gene_syn MFB16.3  go_component chloroplast|GO:0009507||IEA  product CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein  note CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (TAIR:AT5G50640.1); Has 5292 Blast hits to 4070 proteins in 856 species: Archae - 623; Bacteria - 3405; Metazoa - 4; Fungi - 88; Plants - 150; Viruses - 0; Other Eukaryotes - 1022 (source: NCBI BLink).  protein_id AT5G50530.1p  transcript_id AT5G50530.1  protein_id AT5G50530.1p  transcript_id AT5G50530.1  
At5g50540	chr5:020575100	0.0	C/20575100-20575441	AT5G50540.1  CDS  gene_syn MFB16.7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: pollen tube; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G50645.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50540.1p  transcript_id AT5G50540.1  protein_id AT5G50540.1p  transcript_id AT5G50540.1  
At5g50550	chr5:020576870	0.0	W/20576870-20577121,20577200-20577433,20577523-20577614,20577687-20577783,20577868-20577943,20578032-20578155,20578234-20578350,20578466-20578533,20578628-20578719	AT5G50550.1  CDS  gene_syn MFB16.9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product WD-40 repeat family protein / St12p protein, putative  note WD-40 repeat family protein / St12p protein, putative; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein / St12p protein, putative (TAIR:AT5G50650.1); Has 6284 Blast hits to 3681 proteins in 273 species: Archae - 34; Bacteria - 2386; Metazoa - 1266; Fungi - 1210; Plants - 323; Viruses - 0; Other Eukaryotes - 1065 (source: NCBI BLink).  protein_id AT5G50550.1p  transcript_id AT5G50550.1  protein_id AT5G50550.1p  transcript_id AT5G50550.1  
At5g50560	chr5:020579233	0.0	W/20579233-20579436	AT5G50560.1  CDS  gene_syn MFB16.5  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G50660.1); Has 168 Blast hits to 167 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 168; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50560.1p  transcript_id AT5G50560.1  protein_id AT5G50560.1p  transcript_id AT5G50560.1  
At5g50562	chr5:020580269	0.0	C/20580269-20580442	AT5G50562.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G50562.1p  transcript_id AT5G50562.1  protein_id AT5G50562.1p  transcript_id AT5G50562.1  
At5g50565	chr5:020580894	0.0	W/20580894-20580958,20581221-20581327,20581771-20581826	AT5G50565.1  CDS  gene_syn MFB16.4  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G50665.1); Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50565.1p  transcript_id AT5G50565.1  protein_id AT5G50565.1p  transcript_id AT5G50565.1  
At5g50570	chr5:020583352	0.0	C/20583352-20583791,20583147-20583280,20582555-20583060	AT5G50570.1  CDS  gene_syn MBA10.13, MBA10_13  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product squamosa promoter-binding protein, putative  note squamosa promoter-binding protein, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-binding protein, putative (TAIR:AT5G50670.1); Has 529 Blast hits to 529 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 528; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50570.1p  transcript_id AT5G50570.1  protein_id AT5G50570.1p  transcript_id AT5G50570.1  
At5g50570	chr5:020583352	0.0	C/20583352-20583791,20583147-20583280,20582555-20583060	AT5G50570.2  CDS  gene_syn MBA10.13, MBA10_13  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product squamosa promoter-binding protein, putative  note squamosa promoter-binding protein, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-binding protein, putative (TAIR:AT5G50670.1); Has 529 Blast hits to 529 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 528; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50570.2p  transcript_id AT5G50570.2  protein_id AT5G50570.2p  transcript_id AT5G50570.2  
At5g50580	chr5:020585500	0.0	W/20585500-20585582,20585777-20585828,20585923-20586118,20586203-20586282,20586380-20586496,20586601-20586651,20586744-20586810,20586893-20586996,20587089-20587193,20587294-20587401	AT5G50580.2  CDS  gene_syn AT-SAE1-2, MBA10.22, MBA10_22, SAE1B, SUMO-ACTIVATING ENZYME 1B  gene SAE1B  function Encodes one of the two subunits of the SUMO activation enzyme required during sumolation. Sumolation is a post-translational protein modification process similar to ubiquitination during which a polypeptide (SUMO) is covalently attached to a target protein.  go_component cellular_component|GO:0005575||ND  go_process protein sumoylation|GO:0016925|12482876|ISS  go_process protein sumoylation|GO:0016925|18502747|IDA  go_function SUMO activating enzyme activity|GO:0019948|12482876|ISS  go_function SUMO activating enzyme activity|GO:0019948||ISS  product SAE1B (SUMO-ACTIVATING ENZYME 1B); SUMO activating enzyme  note SUMO-ACTIVATING ENZYME 1B (SAE1B); FUNCTIONS IN: SUMO activating enzyme activity; INVOLVED IN: protein sumoylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594), Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding (InterPro:IPR016040), Ubiquitin-activating enzyme, E1-like (InterPro:IPR000011); BEST Arabidopsis thaliana protein match is: SAE1B (SUMO ACTIVATING ENZYME 1B); SUMO activating enzyme (TAIR:AT5G50680.1); Has 3354 Blast hits to 2883 proteins in 680 species: Archae - 57; Bacteria - 1055; Metazoa - 942; Fungi - 435; Plants - 221; Viruses - 0; Other Eukaryotes - 644 (source: NCBI BLink).  protein_id AT5G50580.2p  transcript_id AT5G50580.2  protein_id AT5G50580.2p  transcript_id AT5G50580.2  
At5g50580	chr5:020585500	0.0	W/20585500-20585582,20585777-20585828,20585923-20586118,20586203-20586282,20586380-20586496,20586607-20586651,20586744-20586810,20586893-20586996,20587089-20587193,20587294-20587401	AT5G50580.1  CDS  gene_syn AT-SAE1-2, MBA10.22, MBA10_22, SAE1B, SUMO-ACTIVATING ENZYME 1B  gene SAE1B  function Encodes one of the two subunits of the SUMO activation enzyme required during sumolation. Sumolation is a post-translational protein modification process similar to ubiquitination during which a polypeptide (SUMO) is covalently attached to a target protein.  go_component cellular_component|GO:0005575||ND  go_process protein sumoylation|GO:0016925|12482876|ISS  go_process protein sumoylation|GO:0016925|18502747|IDA  go_function SUMO activating enzyme activity|GO:0019948|12482876|ISS  go_function SUMO activating enzyme activity|GO:0019948||ISS  product SAE1B (SUMO-ACTIVATING ENZYME 1B); SUMO activating enzyme  note SUMO-ACTIVATING ENZYME 1B (SAE1B); FUNCTIONS IN: SUMO activating enzyme activity; INVOLVED IN: protein sumoylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: SAE1B (SUMO ACTIVATING ENZYME 1B); SUMO activating enzyme (TAIR:AT5G50680.2); Has 3366 Blast hits to 2889 proteins in 684 species: Archae - 57; Bacteria - 1065; Metazoa - 943; Fungi - 439; Plants - 221; Viruses - 0; Other Eukaryotes - 641 (source: NCBI BLink).  protein_id AT5G50580.1p  transcript_id AT5G50580.1  protein_id AT5G50580.1p  transcript_id AT5G50580.1  
At5g50590	chr5:020587988	0.0	W/20587988-20588170,20588274-20588466,20588548-20588633,20588704-20588835,20588925-20589053,20589120-20589296	AT5G50590.1  CDS  gene_syn AtHSD4, MFB16.20, hydroxysteroid dehydrogenase 4  gene AtHSD4  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product AtHSD4 (hydroxysteroid dehydrogenase 4); binding / catalytic/ oxidoreductase  note hydroxysteroid dehydrogenase 4 (AtHSD4); FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: AtHSD7 (hydroxysteroid dehydrogenase 7); binding / catalytic/ oxidoreductase (TAIR:AT5G50690.1); Has 71559 Blast hits to 71412 proteins in 2284 species: Archae - 456; Bacteria - 40393; Metazoa - 6334; Fungi - 3782; Plants - 1660; Viruses - 2; Other Eukaryotes - 18932 (source: NCBI BLink).  protein_id AT5G50590.1p  transcript_id AT5G50590.1  protein_id AT5G50590.1p  transcript_id AT5G50590.1  
At5g50600	chr5:020591471	0.0	C/20591471-20591653,20590961-20591153,20590764-20590849,20590553-20590684,20590299-20590463,20589917-20590207	AT5G50600.1  CDS  gene_syn AtHSD1, MFB16.22, hydroxysteroid dehydrogenase 1  gene AtHSD1  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process response to abscisic acid stimulus|GO:0009737|17616511|IMP  go_process response to brassinosteroid stimulus|GO:0009741|17616511|IMP  go_function oxidoreductase activity|GO:0016491||ISS  product AtHSD1 (hydroxysteroid dehydrogenase 1); binding / catalytic/ oxidoreductase  note hydroxysteroid dehydrogenase 1 (AtHSD1); FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: response to brassinosteroid stimulus, response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT5G50700.1); Has 74325 Blast hits to 74174 proteins in 2197 species: Archae - 462; Bacteria - 42577; Metazoa - 5608; Fungi - 4295; Plants - 1647; Viruses - 2; Other Eukaryotes - 19734 (source: NCBI BLink).  protein_id AT5G50600.1p  transcript_id AT5G50600.1  protein_id AT5G50600.1p  transcript_id AT5G50600.1  
At5g50610	chr5:020593702	0.0	W/20593702-20594259	AT5G50610.1  CDS  gene_syn MBA10.17, MBA10_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G50710.1); Has 20 Blast hits to 20 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50610.1p  transcript_id AT5G50610.1  protein_id AT5G50610.1p  transcript_id AT5G50610.1  
At5g50620	chr5:020600727	0.0	C/20600727-20601416	AT5G50620.1  CDS  gene_syn MFB16.1, MFB16_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G50510.1); Has 119 Blast hits to 119 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 119; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50620.1p  transcript_id AT5G50620.1  protein_id AT5G50620.1p  transcript_id AT5G50620.1  
At5g50630	chr5:020604587	0.0	C/20604587-20604928,20603576-20604390,20603021-20603486	AT5G50630.1  CDS  gene_syn MFB16.2, MFB16_2  go_component endomembrane system|GO:0012505||IEA  product nodulin family protein  note nodulin family protein; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nodulin family protein (TAIR:AT5G50520.1); Has 1819 Blast hits to 1753 proteins in 484 species: Archae - 9; Bacteria - 868; Metazoa - 11; Fungi - 200; Plants - 319; Viruses - 0; Other Eukaryotes - 412 (source: NCBI BLink).  protein_id AT5G50630.1p  transcript_id AT5G50630.1  protein_id AT5G50630.1p  transcript_id AT5G50630.1  
At5g50640	chr5:020608113	0.0	C/20608113-20608264,20607823-20608003,20607603-20607735,20607361-20607531,20607185-20607263,20606953-20607066,20606762-20606828,20606498-20606603,20606349-20606407,20606090-20606199,20605893-20606011,20605715-20605800,20605544-20605633,20605218-20605397	AT5G50640.1  CDS  go_component chloroplast|GO:0009507||IEA  product CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein  note CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (TAIR:AT5G50530.1); Has 5292 Blast hits to 4070 proteins in 856 species: Archae - 623; Bacteria - 3405; Metazoa - 4; Fungi - 88; Plants - 150; Viruses - 0; Other Eukaryotes - 1022 (source: NCBI BLink).  protein_id AT5G50640.1p  transcript_id AT5G50640.1  protein_id AT5G50640.1p  transcript_id AT5G50640.1  
At5g50645	chr5:020608442	0.0	C/20608442-20608783	AT5G50645.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G50540.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50645.1p  transcript_id AT5G50645.1  protein_id AT5G50645.1p  transcript_id AT5G50645.1  
At5g50650	chr5:020610212	0.0	W/20610212-20610463,20610542-20610775,20610865-20610956,20611029-20611125,20611210-20611285,20611374-20611497,20611576-20611692,20611808-20611875,20611970-20612061	AT5G50650.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product WD-40 repeat family protein / St12p protein, putative  note WD-40 repeat family protein / St12p protein, putative; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein / St12p protein, putative (TAIR:AT5G50550.1); Has 6284 Blast hits to 3681 proteins in 273 species: Archae - 34; Bacteria - 2386; Metazoa - 1266; Fungi - 1210; Plants - 323; Viruses - 0; Other Eukaryotes - 1065 (source: NCBI BLink).  protein_id AT5G50650.1p  transcript_id AT5G50650.1  protein_id AT5G50650.1p  transcript_id AT5G50650.1  
At5g50660	chr5:020612575	0.0	W/20612575-20612778	AT5G50660.1  CDS  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G50560.1); Has 168 Blast hits to 167 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 168; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50660.1p  transcript_id AT5G50660.1  protein_id AT5G50660.1p  transcript_id AT5G50660.1  
At5g50665	chr5:020614236	0.0	W/20614236-20614300,20614563-20614669,20615113-20615168	AT5G50665.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G50565.1); Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50665.1p  transcript_id AT5G50665.1  protein_id AT5G50665.1p  transcript_id AT5G50665.1  
At5g50670	chr5:020616694	0.0	C/20616694-20617133,20616489-20616622,20615897-20616402	AT5G50670.1  CDS  gene_syn MFB16.6  go_component nucleus|GO:0005634||IEA  go_function DNA binding|GO:0003677||IEA  go_component nucleus|GO:0005634||ISS  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product squamosa promoter-binding protein, putative  note squamosa promoter-binding protein, putative; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-binding protein, putative (TAIR:AT5G50570.2); Has 529 Blast hits to 529 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 528; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50670.1p  transcript_id AT5G50670.1  protein_id AT5G50670.1p  transcript_id AT5G50670.1  
At5g50680	chr5:020618842	0.0	W/20618842-20618924,20619119-20619170,20619265-20619460,20619545-20619624,20619722-20619838,20619943-20619993,20620086-20620152,20620235-20620338,20620431-20620535,20620636-20620743	AT5G50680.1  CDS  gene_syn ARABIDOPSIS THALIANA SUMO ACTIVATING ENZYME 1B, ATSAE1B, MFB16.15, SAE1B, SUMO ACTIVATING ENZYME 1B  gene SAE1B  function Encodes a protein that is part of a heterodimeric SUMO E1 activating enzyme.  go_component cellular_component|GO:0005575||ND  go_process protein sumoylation|GO:0016925|16920872|IDA  go_function SUMO activating enzyme activity|GO:0019948|16920872|IDA  go_function SUMO activating enzyme activity|GO:0019948||ISS  product SAE1B (SUMO ACTIVATING ENZYME 1B); SUMO activating enzyme  note SUMO ACTIVATING ENZYME 1B (SAE1B); FUNCTIONS IN: SUMO activating enzyme activity; INVOLVED IN: protein sumoylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594), Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding (InterPro:IPR016040), Ubiquitin-activating enzyme, E1-like (InterPro:IPR000011); BEST Arabidopsis thaliana protein match is: SAE1B (SUMO-ACTIVATING ENZYME 1B); SUMO activating enzyme (TAIR:AT5G50580.2); Has 3354 Blast hits to 2883 proteins in 680 species: Archae - 57; Bacteria - 1055; Metazoa - 942; Fungi - 435; Plants - 221; Viruses - 0; Other Eukaryotes - 644 (source: NCBI BLink).  protein_id AT5G50680.1p  transcript_id AT5G50680.1  protein_id AT5G50680.1p  transcript_id AT5G50680.1  
At5g50680	chr5:020618842	0.0	W/20618842-20618924,20619119-20619170,20619265-20619460,20619545-20619624,20619722-20619838,20619949-20619993,20620086-20620152,20620235-20620338,20620431-20620535,20620636-20620743	AT5G50680.2  CDS  gene_syn ARABIDOPSIS THALIANA SUMO ACTIVATING ENZYME 1B, ATSAE1B, MFB16.15, SAE1B, SUMO ACTIVATING ENZYME 1B  gene SAE1B  function Encodes a protein that is part of a heterodimeric SUMO E1 activating enzyme.  go_component cellular_component|GO:0005575||ND  go_process protein sumoylation|GO:0016925|16920872|IDA  go_function SUMO activating enzyme activity|GO:0019948|16920872|IDA  go_function SUMO activating enzyme activity|GO:0019948||ISS  product SAE1B (SUMO ACTIVATING ENZYME 1B); SUMO activating enzyme  note SUMO ACTIVATING ENZYME 1B (SAE1B); FUNCTIONS IN: SUMO activating enzyme activity; INVOLVED IN: protein sumoylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: SAE1B (SUMO-ACTIVATING ENZYME 1B); SUMO activating enzyme (TAIR:AT5G50580.1); Has 3366 Blast hits to 2889 proteins in 684 species: Archae - 57; Bacteria - 1065; Metazoa - 943; Fungi - 439; Plants - 221; Viruses - 0; Other Eukaryotes - 641 (source: NCBI BLink).  protein_id AT5G50680.2p  transcript_id AT5G50680.2  protein_id AT5G50680.2p  transcript_id AT5G50680.2  
At5g50690	chr5:020621330	0.0	W/20621330-20621512,20621616-20621808,20621890-20621975,20622046-20622177,20622267-20622395,20622462-20622638	AT5G50690.1  CDS  gene_syn AtHSD7, hydroxysteroid dehydrogenase 7  gene AtHSD7  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product AtHSD7 (hydroxysteroid dehydrogenase 7); binding / catalytic/ oxidoreductase  note hydroxysteroid dehydrogenase 7 (AtHSD7); FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: AtHSD4 (hydroxysteroid dehydrogenase 4); binding / catalytic/ oxidoreductase (TAIR:AT5G50590.1); Has 71559 Blast hits to 71412 proteins in 2284 species: Archae - 456; Bacteria - 40393; Metazoa - 6334; Fungi - 3782; Plants - 1660; Viruses - 2; Other Eukaryotes - 18932 (source: NCBI BLink).  protein_id AT5G50690.1p  transcript_id AT5G50690.1  protein_id AT5G50690.1p  transcript_id AT5G50690.1  
At5g50700	chr5:020624813	0.0	C/20624813-20624995,20624303-20624495,20624106-20624191,20623895-20624026,20623641-20623805,20623259-20623549	AT5G50700.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: seed; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: AtHSD1 (hydroxysteroid dehydrogenase 1); binding / catalytic/ oxidoreductase (TAIR:AT5G50600.1); Has 74325 Blast hits to 74174 proteins in 2197 species: Archae - 462; Bacteria - 42577; Metazoa - 5608; Fungi - 4295; Plants - 1647; Viruses - 2; Other Eukaryotes - 19734 (source: NCBI BLink).  protein_id AT5G50700.1p  transcript_id AT5G50700.1  protein_id AT5G50700.1p  transcript_id AT5G50700.1  
At5g50710	chr5:020627044	0.0	W/20627044-20627601	AT5G50710.1  CDS  gene_syn MFB16.10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G50610.1); Has 20 Blast hits to 20 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50710.1p  transcript_id AT5G50710.1  protein_id AT5G50710.1p  transcript_id AT5G50710.1  
At5g50715	chr5:020631644	0.0	W/20631644-20632311	AT5G50715.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 1.3e-40 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At5g50717	chr5:020632514	0.0	W/20632514-20632637	AT5G50717.1  miRNA  gene_syn MICRORNA405B, MIR405B  gene MIR405B  function Encodes a microRNA. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence:ATGAGTTGGGTCTAACCCATAACT  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR405B (MICRORNA405B); miRNA  transcript_id AT5G50717.1  
At5g50720	chr5:020634456	0.0	C/20634456-20634502,20634252-20634278,20634049-20634171,20633818-20633950,20633442-20633462	AT5G50720.1  CDS  gene_syn ATHVA22E, MFB16.12, MFB16_12  gene ATHVA22E  function Encodes one of five HVA22 homologs in Arabidopsis. HVA22 is an ABA- and stress-inducible gene first isolated from barley. Members of this gene family have only been found in eukaryotes. AtHVA22e mRNA is upregulated to varying degrees in response to cold stress, salt stress, ABA treatment or dehydration.  go_component endomembrane system|GO:0012505||IEA  go_process response to cold|GO:0009409|12081371|IEP  go_process response to water deprivation|GO:0009414|12081371|IEP  go_process response to abscisic acid stimulus|GO:0009737|12081371|IEP  go_process hyperosmotic salinity response|GO:0042538|12081371|IEP  go_function molecular_function|GO:0003674||ND  product ATHVA22E  note ATHVA22E; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to water deprivation, hyperosmotic salinity response, response to cold, response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: TB2/DP1 and HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: ATHVA22D (TAIR:AT4G24960.1); Has 1021 Blast hits to 1020 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 512; Fungi - 145; Plants - 296; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT5G50720.1p  transcript_id AT5G50720.1  protein_id AT5G50720.1p  transcript_id AT5G50720.1  
At5g50740	chr5:020637691	0.0	C/20637691-20637847,20637381-20637589,20637148-20637270	AT5G50740.2  CDS  gene_syn MFB16.14, MFB16_14  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product metal ion binding  note metal ion binding; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: ATFP3; metal ion binding / transition metal ion binding (TAIR:AT5G63530.2); Has 917 Blast hits to 760 proteins in 71 species: Archae - 0; Bacteria - 12; Metazoa - 47; Fungi - 6; Plants - 736; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT5G50740.2p  transcript_id AT5G50740.2  protein_id AT5G50740.2p  transcript_id AT5G50740.2  
At5g50740	chr5:020637691	0.0	C/20637691-20637847,20637381-20637589,20637189-20637270,20635983-20636386	AT5G50740.1  CDS  gene_syn MFB16.14, MFB16_14  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product metal ion binding  note metal ion binding; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: ATFP3; metal ion binding / transition metal ion binding (TAIR:AT5G63530.2); Has 2659 Blast hits to 1646 proteins in 205 species: Archae - 0; Bacteria - 157; Metazoa - 506; Fungi - 55; Plants - 1236; Viruses - 3; Other Eukaryotes - 702 (source: NCBI BLink).  protein_id AT5G50740.1p  transcript_id AT5G50740.1  protein_id AT5G50740.1p  transcript_id AT5G50740.1  
At5g50740	chr5:020637962	0.0	C/20637962-20637970,20637691-20637859,20637381-20637589,20637189-20637270,20635983-20636386	AT5G50740.3  CDS  gene_syn MFB16.14, MFB16_14  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product metal ion binding  note metal ion binding; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: ATFP3; metal ion binding / transition metal ion binding (TAIR:AT5G63530.2); Has 121 Blast hits to 88 proteins in 23 species: Archae - 0; Bacteria - 12; Metazoa - 24; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G50740.3p  transcript_id AT5G50740.3  protein_id AT5G50740.3p  transcript_id AT5G50740.3  
At5g50750	chr5:020641066	0.0	W/20641066-20641395,20641489-20641739,20641957-20642470	AT5G50750.1  CDS  gene_syn MFB16.25, MFB16_25, REVERSIBLY GLYCOSYLATED POLYPEPTIDE 4, RGP4  gene RGP4  function reversibly glycosylated polypeptide RGP-4 (RGP4)  go_component Golgi apparatus|GO:0005794||IEA  go_component plant-type cell wall|GO:0009505||IEA  go_component cell junction|GO:0030054||IEA  go_process cell wall organization|GO:0007047||IEA  go_process cellulose biosynthetic process|GO:0030244||IEA  go_function transferase activity, transferring hexosyl groups|GO:0016758||IEA  product RGP4 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 4); transferase, transferring hexosyl groups  note REVERSIBLY GLYCOSYLATED POLYPEPTIDE 4 (RGP4); FUNCTIONS IN: transferase activity, transferring hexosyl groups; INVOLVED IN: cellulose biosynthetic process, cell wall organization; LOCATED IN: cell junction, Golgi apparatus, plant-type cell wall; CONTAINS InterPro DOMAIN/s: Alpha-1,4-glucan-protein synthase, UDP-forming (InterPro:IPR004901); BEST Arabidopsis thaliana protein match is: RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1); cellulose synthase (UDP-forming) (TAIR:AT3G02230.1); Has 142 Blast hits to 140 proteins in 32 species: Archae - 14; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G50750.1p  transcript_id AT5G50750.1  protein_id AT5G50750.1p  transcript_id AT5G50750.1  
At5g50760	chr5:020644780	0.0	W/20644780-20645331	AT5G50760.1  CDS  gene_syn MFB16.16, MFB16_16  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; EXPRESSED IN: stem, sepal, hypocotyl, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein-related (TAIR:AT3G43120.1); Has 540 Blast hits to 540 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 539; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G50760.1p  transcript_id AT5G50760.1  protein_id AT5G50760.1p  transcript_id AT5G50760.1  
At5g50770	chr5:020648514	0.0	C/20648514-20648696,20648248-20648440,20647864-20647949,20647648-20647779,20647384-20647548,20646790-20647059	AT5G50770.1  CDS  gene_syn AtHSD6, MFB16.17, MFB16_17, hydroxysteroid dehydrogenase 6  gene AtHSD6  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product AtHSD6 (hydroxysteroid dehydrogenase 6); binding / catalytic/ oxidoreductase  note hydroxysteroid dehydrogenase 6 (AtHSD6); FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT5G50700.1); Has 61160 Blast hits to 61030 proteins in 2128 species: Archae - 375; Bacteria - 37001; Metazoa - 4942; Fungi - 3566; Plants - 1160; Viruses - 2; Other Eukaryotes - 14114 (source: NCBI BLink).  protein_id AT5G50770.1p  transcript_id AT5G50770.1  protein_id AT5G50770.1p  transcript_id AT5G50770.1  
At5g50780	chr5:020650269	0.0	W/20650269-20650710,20650787-20650861,20650944-20650978,20651057-20651135,20651229-20651321,20651403-20651487,20651620-20651695,20652119-20652247,20652461-20652559,20652653-20652754,20652926-20653087,20653153-20653293,20653399-20653450,20653533-20653644,20653742-20653827,20653910-20654259,20654349-20654428,20654524-20654608,20654692-20654814,20654895-20654948	AT5G50780.1  CDS  gene_syn MFB16.18, MFB16_18  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ATP binding|GO:0005524||ISS  product ATP binding  note ATP binding; FUNCTIONS IN: ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ATP-binding region, ATPase-like (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: ATP-binding region, ATPase-like domain-containing protein (TAIR:AT4G24970.1); Has 1093 Blast hits to 1033 proteins in 157 species: Archae - 2; Bacteria - 79; Metazoa - 521; Fungi - 62; Plants - 115; Viruses - 3; Other Eukaryotes - 311 (source: NCBI BLink).  protein_id AT5G50780.1p  transcript_id AT5G50780.1  protein_id AT5G50780.1p  transcript_id AT5G50780.1  
At5g50790	chr5:020657782	0.0	C/20657782-20657827,20657612-20657648,20657317-20657527,20657063-20657224,20656859-20656978,20656461-20656754	AT5G50790.1  CDS  gene_syn MFB16.26, MFB16_26  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product nodulin MtN3 family protein  note nodulin MtN3 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: MtN3 and saliva related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), MtN3 and saliva related transmembrane protein (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29) (TAIR:AT5G13170.1); Has 571 Blast hits to 558 proteins in 97 species: Archae - 0; Bacteria - 7; Metazoa - 199; Fungi - 0; Plants - 292; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT5G50790.1p  transcript_id AT5G50790.1  protein_id AT5G50790.1p  transcript_id AT5G50790.1  
At5g50800	chr5:020667095	0.0	C/20667095-20667140,20666941-20666977,20666636-20666849,20666329-20666490,20665998-20666117,20665280-20665585	AT5G50800.1  CDS  gene_syn K7B16.1, K7B16_1  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  product nodulin MtN3 family protein  note nodulin MtN3 family protein; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: MtN3 and saliva related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), MtN3 and saliva related transmembrane protein (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: nodulin MtN3 family protein (TAIR:AT4G25010.1); Has 585 Blast hits to 542 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 231; Fungi - 0; Plants - 290; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT5G50800.1p  transcript_id AT5G50800.1  protein_id AT5G50800.1p  transcript_id AT5G50800.1  
At5g50801	chr5:020668113	0.0	C/20668113-20668268	AT5G50801.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G50801.1p  transcript_id AT5G50801.1  protein_id AT5G50801.1p  transcript_id AT5G50801.1  
At5g50805	chr5:020675222	0.0	W/20675222-20675293	AT5G50805.1  tRNA  gene_syn 67828.TRNA-GLN-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gln (anticodon: TTG)  transcript_id AT5G50805.1  
At5g50810	chr5:020676458	0.0	C/20676458-20676505,20675875-20676060	AT5G50810.1  CDS  gene_syn ARTRANSLOCASE INNER MEMBRANE SUBUNIT 8, K7B16.3, K7B16_3, TIM8  gene TIM8  function Encodes a small zinc finger-like protein that is a component of the mitochondrial protein import apparatus.  go_process protein targeting to mitochondrion|GO:0006626||IEA  go_process protein import into mitochondrial inner membrane|GO:0045039||IEA  go_component mitochondrion|GO:0005739|14730085|IDA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_component mitochondrial intermembrane space|GO:0005758|14730085|IDA  go_process protein targeting to mitochondrion|GO:0006626||ISS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product TIM8; P-P-bond-hydrolysis-driven protein transmembrane transporter  note ARTRANSLOCASE INNER MEMBRANE SUBUNIT 8 (TIM8); FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein targeting to mitochondrion, protein import into mitochondrial inner membrane; LOCATED IN: mitochondrion, mitochondrial inner membrane, mitochondrial intermembrane space; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Tim10/DDP-type (InterPro:IPR004217); BEST Arabidopsis thaliana protein match is: TIM13 (TRANSLOCASE OF THE INNER MITOCHONDRIAL MEMBRANE 13); P-P-bond-hydrolysis-driven protein transmembrane transporter (TAIR:AT1G61570.1); Has 519 Blast hits to 519 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 304; Fungi - 122; Plants - 77; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT5G50810.1p  transcript_id AT5G50810.1  protein_id AT5G50810.1p  transcript_id AT5G50810.1  
At5g50820	chr5:020679225	0.0	W/20679225-20679411,20679514-20679785,20679884-20680006	AT5G50820.1  CDS  gene_syn Arabidopsis NAC domain containing protein 97, K7B16.4, K7B16_4, anac097  gene anac097  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac097 (Arabidopsis NAC domain containing protein 97); transcription factor  note Arabidopsis NAC domain containing protein 97 (anac097); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC083 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 83); transcription factor (TAIR:AT5G13180.1); Has 1297 Blast hits to 1295 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1297; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50820.1p  transcript_id AT5G50820.1  protein_id AT5G50820.1p  transcript_id AT5G50820.1  
At5g50830	chr5:020683452	0.0	W/20683452-20684067,20684240-20684304,20684385-20684549	AT5G50830.1  CDS  gene_syn K7B16.5, K7B16_5  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 5134 Blast hits to 3143 proteins in 259 species: Archae - 8; Bacteria - 171; Metazoa - 1725; Fungi - 394; Plants - 160; Viruses - 78; Other Eukaryotes - 2598 (source: NCBI BLink).  protein_id AT5G50830.1p  transcript_id AT5G50830.1  protein_id AT5G50830.1p  transcript_id AT5G50830.1  
At5g50830	chr5:020683452	0.0	W/20683452-20684067,20684240-20684307,20684385-20684549	AT5G50830.2  CDS  gene_syn K7B16.5, K7B16_5  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 4942 Blast hits to 3054 proteins in 259 species: Archae - 10; Bacteria - 158; Metazoa - 1691; Fungi - 343; Plants - 164; Viruses - 78; Other Eukaryotes - 2498 (source: NCBI BLink).  protein_id AT5G50830.2p  transcript_id AT5G50830.2  protein_id AT5G50830.2p  transcript_id AT5G50830.2  
At5g50840	chr5:020685903	0.0	W/20685903-20686194,20686284-20686351,20686446-20686557,20686653-20686720,20686819-20686896,20687419-20687483,20687724-20687790,20687899-20688081,20688259-20688315,20688416-20688511,20688608-20688739	AT5G50840.2  CDS  gene_syn K7B16.6, K7B16_6  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT5G59210.1); Has 48881 Blast hits to 26998 proteins in 1148 species: Archae - 400; Bacteria - 3488; Metazoa - 25141; Fungi - 2545; Plants - 1208; Viruses - 169; Other Eukaryotes - 15930 (source: NCBI BLink).  protein_id AT5G50840.2p  transcript_id AT5G50840.2  protein_id AT5G50840.2p  transcript_id AT5G50840.2  
At5g50840	chr5:020685903	0.0	W/20685903-20686194,20686284-20686351,20686449-20686557,20686653-20686720,20686819-20686896,20687419-20687483,20687724-20687790,20687899-20688081,20688259-20688315,20688416-20688511,20688608-20688739	AT5G50840.1  CDS  gene_syn K7B16.6, K7B16_6  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: LINC2 (LITTLE NUCLEI2) (TAIR:AT1G13220.2); Has 50047 Blast hits to 27335 proteins in 1173 species: Archae - 429; Bacteria - 3521; Metazoa - 26018; Fungi - 2663; Plants - 1200; Viruses - 162; Other Eukaryotes - 16054 (source: NCBI BLink).  protein_id AT5G50840.1p  transcript_id AT5G50840.1  protein_id AT5G50840.1p  transcript_id AT5G50840.1  
At5g50850	chr5:020689671	0.0	W/20689671-20689712,20689834-20689896,20690487-20690567,20690654-20690680,20690779-20690841,20690946-20691032,20691245-20691370,20691738-20691871,20691961-20692033,20692134-20692199,20692380-20692418,20692506-20692630,20692728-20692842,20692926-20692976	AT5G50850.1  CDS  gene_syn K16E14.6, MAB1, MACCI-BOU  gene MAB1  go_component nucleolus|GO:0005730|15496452|IDA  go_component mitochondrion|GO:0005739|15276431|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_function catalytic activity|GO:0003824||IEA  go_component mitochondrion|GO:0005739|11743114|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function pyruvate dehydrogenase (acetyl-transferring) activity|GO:0004739||ISS  product MAB1 (MACCI-BOU); catalytic/ pyruvate dehydrogenase (acetyl-transferring)  note MACCI-BOU (MAB1); FUNCTIONS IN: pyruvate dehydrogenase (acetyl-transferring) activity, catalytic activity; INVOLVED IN: defense response to bacterium; LOCATED IN: mitochondrion, nucleolus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, C-terminal (InterPro:IPR005476), Transketolase C-terminal-like (InterPro:IPR015941), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase, central region (InterPro:IPR005475); BEST Arabidopsis thaliana protein match is: PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA); pyruvate dehydrogenase (acetyl-transferring) (TAIR:AT1G30120.1); Has 11982 Blast hits to 11974 proteins in 1601 species: Archae - 106; Bacteria - 6028; Metazoa - 516; Fungi - 148; Plants - 236; Viruses - 0; Other Eukaryotes - 4948 (source: NCBI BLink).  protein_id AT5G50850.1p  transcript_id AT5G50850.1  protein_id AT5G50850.1p  transcript_id AT5G50850.1  
At5g50860	chr5:020696627	0.0	C/20696627-20696983,20696206-20696490,20695321-20695638,20694854-20695081,20694597-20694697,20694366-20694492,20693778-20694104	AT5G50860.1  CDS  gene_syn K16E14.1  go_component plasma membrane|GO:0005886|17317660|IDA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function protein kinase activity|GO:0004672||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G54610.3); Has 92915 Blast hits to 91559 proteins in 3045 species: Archae - 45; Bacteria - 7922; Metazoa - 40789; Fungi - 8573; Plants - 18018; Viruses - 403; Other Eukaryotes - 17165 (source: NCBI BLink).  protein_id AT5G50860.1p  transcript_id AT5G50860.1  protein_id AT5G50860.1p  transcript_id AT5G50860.1  
At5g50870	chr5:020700821	0.0	C/20700821-20700998,20700536-20700584,20700003-20700162,20699827-20699910,20699626-20699733	AT5G50870.1  CDS  gene_syn K3K7.1, K3K7_1, UBC27, ubiquitin-conjugating enzyme 27  gene UBC27  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC27 (ubiquitin-conjugating enzyme 27); ubiquitin-protein ligase  note ubiquitin-conjugating enzyme 27 (UBC27); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: UBC8 (UBIQUITIN CONJUGATING ENZYME 8); protein binding / ubiquitin-protein ligase (TAIR:AT5G41700.4); Has 7501 Blast hits to 7499 proteins in 306 species: Archae - 0; Bacteria - 0; Metazoa - 3692; Fungi - 1438; Plants - 1085; Viruses - 19; Other Eukaryotes - 1267 (source: NCBI BLink).  protein_id AT5G50870.1p  transcript_id AT5G50870.1  protein_id AT5G50870.1p  transcript_id AT5G50870.1  
At5g50880	chr5:020701366	0.0	C/20701366-20701644	AT5G50880.1  CDS  gene_syn K3K7.2, K3K7_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50880.1p  transcript_id AT5G50880.1  protein_id AT5G50880.1p  transcript_id AT5G50880.1  
At5g50890	chr5:020702684	0.0	W/20702684-20702883,20703209-20704235	AT5G50890.1  CDS  gene_syn K3K7.3, K3K7_3  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: lipase class 3 family protein (TAIR:AT2G05260.1); Has 115 Blast hits to 115 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50890.1p  transcript_id AT5G50890.1  protein_id AT5G50890.1p  transcript_id AT5G50890.1  
At5g50900	chr5:020705051	0.0	C/20705051-20706718	AT5G50900.1  CDS  gene_syn K3K7.4, K3K7_4  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product armadillo/beta-catenin repeat family protein  note armadillo/beta-catenin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein (TAIR:AT2G45720.2); Has 1813 Blast hits to 1222 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 372; Fungi - 248; Plants - 1021; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink).  protein_id AT5G50900.1p  transcript_id AT5G50900.1  protein_id AT5G50900.1p  transcript_id AT5G50900.1  
At5g50910	chr5:020709061	0.0	C/20709061-20709282,20708409-20708537	AT5G50910.1  CDS  gene_syn K3K7.5, K3K7_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50910.1p  transcript_id AT5G50910.1  protein_id AT5G50910.1p  transcript_id AT5G50910.1  
At5g50915	chr5:020711923	0.0	C/20711923-20712252,20711702-20711827,20711527-20711592,20711349-20711417,20711174-20711257,20710957-20711067,20710764-20710838	AT5G50915.1  CDS  go_component nucleus|GO:0005634||IEA  go_process response to gibberellin stimulus|GO:0009739|17933900|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to gibberellin stimulus; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT1G68920.3); Has 1215 Blast hits to 1215 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 21; Plants - 1193; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50915.1p  transcript_id AT5G50915.1  protein_id AT5G50915.1p  transcript_id AT5G50915.1  
At5g50915	chr5:020711923	0.0	C/20711923-20712252,20711702-20711827,20711527-20711592,20711349-20711417,20711174-20711257,20710957-20711067,20710764-20710838	AT5G50915.2  CDS  go_component nucleus|GO:0005634||IEA  go_process response to gibberellin stimulus|GO:0009739|17933900|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to gibberellin stimulus; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT1G68920.3); Has 1215 Blast hits to 1215 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 21; Plants - 1193; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G50915.2p  transcript_id AT5G50915.2  protein_id AT5G50915.2p  transcript_id AT5G50915.2  
At5g50920	chr5:020719227	0.0	C/20719227-20719800,20718855-20718970,20718633-20718752,20718358-20718543,20717640-20717855,20717325-20717542,20717164-20717239,20716993-20717082,20715710-20716903	AT5G50920.1  CDS  gene_syn ATHSP93-V, CLPC, CLPC1, DCA1, DE-REGULATED CAO ACCUMULATION 1, HEAT SHOCK PROTEIN 93-V, HSP93-V, K3K7.7, K3K7_7  gene CLPC1  function Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery.  go_component cell wall|GO:0005618|16287169|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastid stroma|GO:0009532|14593120|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component chloroplast|GO:0009507|15659100|IDA  go_component chloroplast stroma|GO:0009570|7580259|IDA  go_component Tic complex|GO:0031897|15659100|TAS  go_process chloroplast organization|GO:0009658|15659100|IMP  go_process regulation of chlorophyll biosynthetic process|GO:0010380|17291312|IMP  go_process protein import into chloroplast stroma|GO:0045037|15659100|IMP  go_function ATP-dependent peptidase activity|GO:0004176|7580259|IDA  go_function ATP binding|GO:0005524||ISS  go_function ATPase activity|GO:0016887||ISS  product CLPC1; ATP binding / ATP-dependent peptidase/ ATPase  note CLPC1; FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity, ATP binding; INVOLVED IN: regulation of chlorophyll biosynthetic process, protein import into chloroplast stroma, chloroplast organization; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase associated with various cellular activities, AAA-2 (InterPro:IPR013093), ATPase, AAA+ type, core (InterPro:IPR003593), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), UvrB/UvrC protein (InterPro:IPR001943), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: HSP93-III; ATP binding / ATPase/ DNA binding / nuclease/ nucleoside-triphosphatase/ nucleotide binding / protein binding (TAIR:AT3G48870.1); Has 19861 Blast hits to 18890 proteins in 1842 species: Archae - 355; Bacteria - 10402; Metazoa - 486; Fungi - 538; Plants - 432; Viruses - 8; Other Eukaryotes - 7640 (source: NCBI BLink).  protein_id AT5G50920.1p  transcript_id AT5G50920.1  protein_id AT5G50920.1p  transcript_id AT5G50920.1  
At5g50930	chr5:020722069	0.0	W/20722069-20722127,20722346-20722398,20722535-20722840,20723253-20723324,20723996-20724076,20724160-20724317	AT5G50930.1  CDS  gene_syn K3K7.8, K3K7_8  go_component endomembrane system|GO:0012505||IEA  go_function DNA binding|GO:0003677||IEA  go_process biological_process|GO:0008150||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072); Has 101 Blast hits to 101 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 51; Fungi - 40; Plants - 8; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G50930.1p  transcript_id AT5G50930.1  protein_id AT5G50930.1p  transcript_id AT5G50930.1  
At5g50940	chr5:020724665	0.0	W/20724665-20724719,20724830-20724909,20725064-20725177,20725297-20725472,20725722-20725893,20725953-20726135,20726246-20726281	AT5G50940.1  CDS  gene_syn K3K7.9, K3K7_9  go_component DNA-directed RNA polymerase II, core complex|GO:0005665||IEA  go_process transcription from RNA polymerase II promoter|GO:0006366||IEA  go_function DNA binding|GO:0003677||IEA  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: transcription from RNA polymerase II promoter; LOCATED IN: DNA-directed RNA polymerase II, core complex; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II, heptapeptide repeat, eukaryotic (InterPro:IPR000684); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT4G10070.1).  protein_id AT5G50940.1p  transcript_id AT5G50940.1  protein_id AT5G50940.1p  transcript_id AT5G50940.1  
At5g50950	chr5:020729687	0.0	W/20729687-20729850,20729935-20730052,20730131-20730280,20730909-20731019,20731188-20731271,20731539-20731637,20731736-20731786,20731874-20731923,20731995-20732076,20732216-20732310,20732455-20732521,20732634-20732684,20732786-20732881,20732970-20733068,20733165-20733194,20733291-20733356,20733550-20733636	AT5G50950.2  CDS  gene_syn K3K7.11, K3K7_11  go_process response to salt stress|GO:0009651|17916636|IEP  go_function catalytic activity|GO:0003824||IEA  go_function fumarate hydratase activity|GO:0004333||IEA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function fumarate hydratase activity|GO:0004333||ISS  product fumarate hydratase, putative / fumarase, putative  note fumarate hydratase, putative / fumarase, putative; FUNCTIONS IN: fumarate hydratase activity, catalytic activity; INVOLVED IN: response to salt stress; LOCATED IN: mitochondrion; EXPRESSED IN: male gametophyte, guard cell, root, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Fumarate hydratase, class II (InterPro:IPR005677), L-Aspartase-like (InterPro:IPR008948), Fumarate lyase (InterPro:IPR000362); BEST Arabidopsis thaliana protein match is: FUM1 (FUMARASE 1); catalytic/ fumarate hydratase (TAIR:AT2G47510.2); Has 12906 Blast hits to 12900 proteins in 1538 species: Archae - 239; Bacteria - 6941; Metazoa - 300; Fungi - 218; Plants - 63; Viruses - 0; Other Eukaryotes - 5145 (source: NCBI BLink).  protein_id AT5G50950.2p  transcript_id AT5G50950.2  protein_id AT5G50950.2p  transcript_id AT5G50950.2  
At5g50950	chr5:020729687	0.0	W/20729687-20729850,20729935-20730052,20730131-20730280,20730909-20731019,20731188-20731271,20731539-20731637,20731736-20731786,20731874-20731923,20731995-20732076,20732216-20732310,20732455-20732521,20732634-20732684,20732786-20732881,20732970-20733068,20733165-20733194,20733291-20733476	AT5G50950.1  CDS  gene_syn K3K7.11, K3K7_11  go_process response to salt stress|GO:0009651|17916636|IEP  go_function catalytic activity|GO:0003824||IEA  go_function fumarate hydratase activity|GO:0004333||IEA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function fumarate hydratase activity|GO:0004333||ISS  product fumarate hydratase, putative / fumarase, putative  note fumarate hydratase, putative / fumarase, putative; FUNCTIONS IN: fumarate hydratase activity, catalytic activity; INVOLVED IN: response to salt stress; LOCATED IN: mitochondrion; EXPRESSED IN: male gametophyte, guard cell, root, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Fumarate hydratase, class II (InterPro:IPR005677), L-Aspartase-like (InterPro:IPR008948), Fumarate lyase (InterPro:IPR000362); BEST Arabidopsis thaliana protein match is: FUM1 (FUMARASE 1); catalytic/ fumarate hydratase (TAIR:AT2G47510.2); Has 12875 Blast hits to 12869 proteins in 1540 species: Archae - 239; Bacteria - 6926; Metazoa - 300; Fungi - 206; Plants - 63; Viruses - 0; Other Eukaryotes - 5141 (source: NCBI BLink).  protein_id AT5G50950.1p  transcript_id AT5G50950.1  protein_id AT5G50950.1p  transcript_id AT5G50950.1  
At5g50950	chr5:020729999	0.0	W/20729999-20730052,20730131-20730280,20730909-20731019,20731188-20731271,20731539-20731637,20731736-20731786,20731874-20731923,20731995-20732076,20732216-20732310,20732455-20732521,20732634-20732684,20732786-20732881,20732970-20733068,20733165-20733194,20733291-20733356,20733550-20733636	AT5G50950.3  CDS  gene_syn K3K7.11, K3K7_11  go_process response to salt stress|GO:0009651|17916636|IEP  go_function catalytic activity|GO:0003824||IEA  go_function fumarate hydratase activity|GO:0004333||IEA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function fumarate hydratase activity|GO:0004333||ISS  product fumarate hydratase, putative / fumarase, putative  note fumarate hydratase, putative / fumarase, putative; FUNCTIONS IN: fumarate hydratase activity, catalytic activity; INVOLVED IN: response to salt stress; LOCATED IN: mitochondrion; EXPRESSED IN: male gametophyte, guard cell, root, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Fumarate hydratase, class II (InterPro:IPR005677), L-Aspartase-like (InterPro:IPR008948), Fumarate lyase (InterPro:IPR000362); BEST Arabidopsis thaliana protein match is: FUM1 (FUMARASE 1); catalytic/ fumarate hydratase (TAIR:AT2G47510.2); Has 12640 Blast hits to 12636 proteins in 1537 species: Archae - 237; Bacteria - 6910; Metazoa - 290; Fungi - 218; Plants - 63; Viruses - 0; Other Eukaryotes - 4922 (source: NCBI BLink).  protein_id AT5G50950.3p  transcript_id AT5G50950.3  protein_id AT5G50950.3p  transcript_id AT5G50950.3  
At5g50960	chr5:020734267	0.0	W/20734267-20734303,20734406-20734507,20734911-20735824	AT5G50960.1  CDS  gene_syn K3K7.12, K3K7_12, NBP35, NUCLEOTIDE BINDING PROTEIN 35  gene NBP35  function Highly similar to Saccharomyces cerevisiae NBP35, locus YGL091C. Cytosolic protein that homodimerizes and can assemble both 4Fe-4S - type and 2Fe-2S - type clusters on its amino terminal and carboxy therminal respectively. Null mutants are embryo lethal.  go_component cytosol|GO:0005829|19084504|IDA  go_function nucleotide binding|GO:0000166||ISS  go_function protein homodimerization activity|GO:0042803|19084504|IDA  go_function iron-sulfur cluster binding|GO:0051536|19084504|IMP  product NBP35 (NUCLEOTIDE BINDING PROTEIN 35); iron-sulfur cluster binding / nucleotide binding / protein homodimerization  note NUCLEOTIDE BINDING PROTEIN 35 (NBP35); FUNCTIONS IN: iron-sulfur cluster binding, protein homodimerization activity, nucleotide binding; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mrp, conserved site (InterPro:IPR000808); BEST Arabidopsis thaliana protein match is: INDL (IND1(IRON-SULFUR PROTEIN REQUIRED FOR NADH DEHYDROGENASE)-LIKE) (TAIR:AT4G19540.1); Has 8589 Blast hits to 8558 proteins in 1428 species: Archae - 275; Bacteria - 4133; Metazoa - 321; Fungi - 279; Plants - 112; Viruses - 0; Other Eukaryotes - 3469 (source: NCBI BLink).  protein_id AT5G50960.1p  transcript_id AT5G50960.1  protein_id AT5G50960.1p  transcript_id AT5G50960.1  
At5g50970	chr5:020736377	0.0	W/20736377-20736550,20736656-20736968,20737055-20737211,20737304-20737348,20737980-20738145,20738274-20738638,20738719-20738901,20738997-20739132	AT5G50970.1  CDS  gene_syn K3K7.13, K3K7_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product WD-40 repeat family protein  note WD-40 repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G19920.1); Has 1904 Blast hits to 1568 proteins in 194 species: Archae - 0; Bacteria - 413; Metazoa - 642; Fungi - 248; Plants - 168; Viruses - 0; Other Eukaryotes - 433 (source: NCBI BLink).  protein_id AT5G50970.1p  transcript_id AT5G50970.1  protein_id AT5G50970.1p  transcript_id AT5G50970.1  
At5g50990	chr5:020739453	0.0	W/20739453-20739537,20739762-20741281	AT5G50990.1  CDS  gene_syn K3K7.15, K3K7_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT3G62890.1); Has 13116 Blast hits to 4886 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 67; Fungi - 72; Plants - 12769; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink).  protein_id AT5G50990.1p  transcript_id AT5G50990.1  protein_id AT5G50990.1p  transcript_id AT5G50990.1  
At5g50995	chr5:020741678	0.0	C/20741678-20741714	AT5G50995.1  tRNA  gene_syn 67830.TRNA-TYR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT5G50995.1  
At5g51000	chr5:020742533	0.0	C/20742533-20743669	AT5G51000.1  CDS  gene_syn K3K7.17, K3K7_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G19560.1); Has 612 Blast hits to 588 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 612; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G51000.1p  transcript_id AT5G51000.1  protein_id AT5G51000.1p  transcript_id AT5G51000.1  
At5g51010	chr5:020744615	0.0	W/20744615-20744823,20744916-20744974,20745069-20745186,20745266-20745344	AT5G51010.1  CDS  gene_syn K3K7.19, K3K7_19  go_function electron carrier activity|GO:0009055||IEA  go_function metal ion binding|GO:0046872||IEA  go_function metal ion binding|GO:0046872||ISS  product rubredoxin family protein  note rubredoxin family protein; FUNCTIONS IN: electron carrier activity, metal ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rubredoxin-type Fe(Cys)4 protein (InterPro:IPR004039); BEST Arabidopsis thaliana protein match is: ENH1 (enhancer of sos3-1); electron carrier/ metal ion binding / protein binding (TAIR:AT5G17170.1); Has 164 Blast hits to 162 proteins in 60 species: Archae - 34; Bacteria - 74; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G51010.1p  transcript_id AT5G51010.1  protein_id AT5G51010.1p  transcript_id AT5G51010.1  
At5g51020	chr5:020746986	0.0	C/20746986-20747165,20746824-20746873,20746612-20746672,20746479-20746514,20746335-20746385,20746173-20746265,20745992-20746096,20745807-20745899,20745560-20745700	AT5G51020.1  CDS  gene_syn CRL, CRUMPLED LEAF, K3K7.20, K3K7_20  gene CRL  function Encodes CRL (CRUMPLED LEAF), a protein localized in the outer envelope membrane of plastids. Mutation in this gene affects the pattern of cell division, cell differentiation and plastid division.  go_component chloroplast outer membrane|GO:0009707|15086805|IDA  go_process plastid fission|GO:0043572|15086805|IMP  go_process regulation of cell division|GO:0051302|15086805|IMP  go_function molecular_function|GO:0003674||ND  product CRL (CRUMPLED LEAF)  note CRUMPLED LEAF (CRL); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of cell division, plastid fission; LOCATED IN: chloroplast outer membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1001 (InterPro:IPR010404); Has 88 Blast hits to 88 proteins in 30 species: Archae - 0; Bacteria - 59; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT5G51020.1p  transcript_id AT5G51020.1  protein_id AT5G51020.1p  transcript_id AT5G51020.1  
At5g51030	chr5:020749258	0.0	C/20749258-20749352,20748662-20748920,20748346-20748540,20747862-20748257	AT5G51030.1  CDS  gene_syn K3K7.21, K3K7_21  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT5G61830.1); Has 47127 Blast hits to 47094 proteins in 1905 species: Archae - 307; Bacteria - 27807; Metazoa - 4011; Fungi - 1979; Plants - 1437; Viruses - 2; Other Eukaryotes - 11584 (source: NCBI BLink).  protein_id AT5G51030.1p  transcript_id AT5G51030.1  protein_id AT5G51030.1p  transcript_id AT5G51030.1  
At5g51040	chr5:020750700	0.0	W/20750700-20750815,20750908-20751015,20751085-20751211,20751481-20751549,20751644-20751790	AT5G51040.1  CDS  gene_syn K3K7.22, K3K7_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF339 (InterPro:IPR005631); Has 352 Blast hits to 352 proteins in 124 species: Archae - 0; Bacteria - 160; Metazoa - 11; Fungi - 23; Plants - 19; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).  protein_id AT5G51040.1p  transcript_id AT5G51040.1  protein_id AT5G51040.1p  transcript_id AT5G51040.1  
At5g51040	chr5:020750700	0.0	W/20750700-20750815,20750908-20751015,20751097-20751211,20751481-20751549,20751644-20751790	AT5G51040.2  CDS  gene_syn K3K7.22, K3K7_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF339 (InterPro:IPR005631); Has 220 Blast hits to 220 proteins in 81 species: Archae - 0; Bacteria - 107; Metazoa - 5; Fungi - 8; Plants - 19; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).  protein_id AT5G51040.2p  transcript_id AT5G51040.2  protein_id AT5G51040.2p  transcript_id AT5G51040.2  
At5g51050	chr5:020753381	0.0	W/20753381-20753786,20754365-20754601,20754696-20755247,20755337-20755427,20755537-20755714	AT5G51050.1  CDS  gene_syn K3K7.23, K3K7_23  go_component mitochondrial inner membrane|GO:0005743||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function binding|GO:0005488||IEA  go_function calcium ion binding|GO:0005509||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_function calcium ion binding|GO:0005509||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: binding, calcium ion binding; INVOLVED IN: transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), Mitochondrial substrate carrier (InterPro:IPR001993), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248), Mitochondrial carrier protein (InterPro:IPR002067), EF-HAND 2 (InterPro:IPR018249), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: mitochondrial substrate carrier family protein (TAIR:AT5G07320.1); Has 25638 Blast hits to 15290 proteins in 922 species: Archae - 0; Bacteria - 9; Metazoa - 12076; Fungi - 6446; Plants - 4192; Viruses - 2; Other Eukaryotes - 2913 (source: NCBI BLink).  protein_id AT5G51050.1p  transcript_id AT5G51050.1  protein_id AT5G51050.1p  transcript_id AT5G51050.1  
At5g51055	chr5:020756330	0.0	W/20756330-20756411	AT5G51055.1  tRNA  gene_syn 67830.TRNA-SER-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT5G51055.1  
At5g51060	chr5:020761623	0.0	C/20761623-20762175,20761385-20761541,20761255-20761303,20761058-20761171,20760547-20760978,20760081-20760470,20759783-20759994,20759601-20759703,20759440-20759513,20757684-20758207,20757484-20757593	AT5G51060.1  CDS  gene_syn A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, ATRBOHC, K3K7.25, K3K7_25, RBOHC, RESPIRATORY BURST OXIDASE HOMOLOG C, RHD2, ROOT HAIR DEFECTIVE 2  gene RHD2  function RHD2 (along with RHD3 and RHD4) is required for normal root hair elongation. Has NADPH oxidase activity. Gene is expressed in the elongation and differention zone in trichoblasts and elongating root hairs. RDH2 is localized to the growing tips of root hair cells. It is required for the production of reactive oxygen species in response to extracellular ATP stimulus. The increase in ROS production stimulates Ca2+ influx.  go_component integral to plasma membrane|GO:0005887|18309082|IDA  go_process defense response|GO:0006952|9628030|TAS  go_process aerobic respiration|GO:0009060|10898773|IMP  go_process root epidermal cell differentiation|GO:0010053|12354956|IMP  go_process response to ATP|GO:0033198|19220789|IMP  go_function NAD(P)H oxidase activity|GO:0016174|12660786|IMP  product RHD2 (ROOT HAIR DEFECTIVE 2); NAD(P)H oxidase  note ROOT HAIR DEFECTIVE 2 (RHD2); FUNCTIONS IN: NAD(P)H oxidase activity; INVOLVED IN: response to ATP, root epidermal cell differentiation, defense response, aerobic respiration; LOCATED IN: integral to plasma membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-HAND 1 (InterPro:IPR018247), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), NADPH oxidase Respiratory burst (InterPro:IPR013623), Ferric reductase, NAD binding (InterPro:IPR013121), EF-HAND 2 (InterPro:IPR018249), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: respiratory burst oxidase, putative / NADPH oxidase, putative (TAIR:AT4G25090.1); Has 1586 Blast hits to 1492 proteins in 239 species: Archae - 6; Bacteria - 132; Metazoa - 590; Fungi - 469; Plants - 264; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).  protein_id AT5G51060.1p  transcript_id AT5G51060.1  protein_id AT5G51060.1p  transcript_id AT5G51060.1  
At5g51070	chr5:020764479	0.0	W/20764479-20765119,20765250-20765407,20765504-20765733,20765823-20765931,20766022-20766152,20766262-20766363,20766451-20766732,20766821-20766924,20767034-20767328,20767418-20767651,20767771-20768007,20768167-20768481	AT5G51070.1  CDS  gene_syn CLPD, EARLY RESPONSIVE TO DEHYDRATION 1, ERD1, K3K7.27, K3K7_27  gene ERD1  function ATP-dependent Clp protease regulatory subunit  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component chloroplast|GO:0009507||IDA  go_component chloroplast stroma|GO:0009570|11299370|TAS  go_process response to water deprivation|GO:0009414|8075396|IEP  go_function ATP binding|GO:0005524||ISS  go_function ATPase activity|GO:0016887||ISS  product ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding  note EARLY RESPONSIVE TO DEHYDRATION 1 (ERD1); FUNCTIONS IN: protein binding, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: response to water deprivation; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase associated with various cellular activities, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: CLPC1; ATP binding / ATP-dependent peptidase/ ATPase (TAIR:AT5G50920.1); Has 15837 Blast hits to 15260 proteins in 1705 species: Archae - 28; Bacteria - 8632; Metazoa - 116; Fungi - 241; Plants - 282; Viruses - 2; Other Eukaryotes - 6536 (source: NCBI BLink).  protein_id AT5G51070.1p  transcript_id AT5G51070.1  protein_id AT5G51070.1p  transcript_id AT5G51070.1  
At5g51080	chr5:020770358	0.0	C/20770358-20770486,20770110-20770268,20769958-20770029,20769754-20769846,20769528-20769671,20769333-20769440,20769139-20769190,20769022-20769044	AT5G51080.3  CDS  gene_syn MWD22.2, MWD22_2  go_function nucleic acid binding|GO:0003676||IEA  go_function ribonuclease H activity|GO:0004523||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nuclease activity|GO:0004518||ISS  product RNase H domain-containing protein  note RNase H domain-containing protein; FUNCTIONS IN: ribonuclease H activity, nuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein L9 N-terminal-like (InterPro:IPR009027), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Ribonuclease H (InterPro:IPR002156); BEST Arabidopsis thaliana protein match is: RNase H domain-containing protein (TAIR:AT1G24090.1); Has 2081 Blast hits to 2077 proteins in 239 species: Archae - 45; Bacteria - 439; Metazoa - 4; Fungi - 0; Plants - 1197; Viruses - 0; Other Eukaryotes - 396 (source: NCBI BLink).  protein_id AT5G51080.3p  transcript_id AT5G51080.3  protein_id AT5G51080.3p  transcript_id AT5G51080.3  
At5g51080	chr5:020770358	0.0	C/20770358-20770675,20770110-20770268,20769958-20770029,20769754-20769846,20769528-20769671,20769333-20769440,20769139-20769190,20769022-20769044	AT5G51080.1  CDS  gene_syn MWD22.2, MWD22_2  go_function nucleic acid binding|GO:0003676||IEA  go_function ribonuclease H activity|GO:0004523||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nuclease activity|GO:0004518||ISS  product RNase H domain-containing protein  note RNase H domain-containing protein; FUNCTIONS IN: ribonuclease H activity, nuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein L9 N-terminal-like (InterPro:IPR009027), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Ribonuclease H (InterPro:IPR002156); BEST Arabidopsis thaliana protein match is: RNase H domain-containing protein (TAIR:AT1G24090.1); Has 2077 Blast hits to 2073 proteins in 239 species: Archae - 45; Bacteria - 435; Metazoa - 4; Fungi - 0; Plants - 1197; Viruses - 0; Other Eukaryotes - 396 (source: NCBI BLink).  protein_id AT5G51080.1p  transcript_id AT5G51080.1  protein_id AT5G51080.1p  transcript_id AT5G51080.1  
At5g51080	chr5:020770358	0.0	C/20770358-20770675,20770110-20770268,20769958-20770029,20769754-20769846,20769528-20769671,20769333-20769440,20769139-20769190,20769022-20769044	AT5G51080.2  CDS  gene_syn MWD22.2, MWD22_2  go_function nucleic acid binding|GO:0003676||IEA  go_function ribonuclease H activity|GO:0004523||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nuclease activity|GO:0004518||ISS  product RNase H domain-containing protein  note RNase H domain-containing protein; FUNCTIONS IN: ribonuclease H activity, nuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein L9 N-terminal-like (InterPro:IPR009027), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Ribonuclease H (InterPro:IPR002156); BEST Arabidopsis thaliana protein match is: RNase H domain-containing protein (TAIR:AT1G24090.1); Has 2077 Blast hits to 2073 proteins in 239 species: Archae - 45; Bacteria - 435; Metazoa - 4; Fungi - 0; Plants - 1197; Viruses - 0; Other Eukaryotes - 396 (source: NCBI BLink).  protein_id AT5G51080.2p  transcript_id AT5G51080.2  protein_id AT5G51080.2p  transcript_id AT5G51080.2  
At5g51090	chr5:020773087	0.0	C/20773087-20773194,20772933-20772968,20772672-20772752,20772237-20772407	AT5G51090.1  CDS  gene_syn MWD22.3, MWD22_3  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G51090.1p  transcript_id AT5G51090.1  protein_id AT5G51090.1p  transcript_id AT5G51090.1  
At5g51100	chr5:020775566	0.0	C/20775566-20775635,20775447-20775484,20775167-20775244,20774636-20774824,20774078-20774249,20773874-20773992,20773752-20773778,20773625-20773648,20773357-20773557	AT5G51100.1  CDS  gene_syn FE SUPEROXIDE DISMUTASE 2, FSD2, MWD22.4, MWD22_4  gene FSD2  function Fe superoxide dismutase whose mRNA levels are increased in response to exposure to UV-B.  go_component nucleoid|GO:0009295|16326926|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to UV|GO:0009411|9765550|IEP  go_function superoxide dismutase activity|GO:0004784|9765550|ISS  go_function superoxide dismutase activity|GO:0004784||ISS  product FSD2 (FE SUPEROXIDE DISMUTASE 2); superoxide dismutase  note FE SUPEROXIDE DISMUTASE 2 (FSD2); FUNCTIONS IN: superoxide dismutase activity; INVOLVED IN: response to UV; LOCATED IN: chloroplast, nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Manganese and iron superoxide dismutase (InterPro:IPR001189); BEST Arabidopsis thaliana protein match is: FSD1 (FE SUPEROXIDE DISMUTASE 1); copper ion binding / superoxide dismutase (TAIR:AT4G25100.3); Has 7964 Blast hits to 7963 proteins in 2200 species: Archae - 145; Bacteria - 5084; Metazoa - 350; Fungi - 604; Plants - 258; Viruses - 1; Other Eukaryotes - 1522 (source: NCBI BLink).  protein_id AT5G51100.1p  transcript_id AT5G51100.1  protein_id AT5G51100.1p  transcript_id AT5G51100.1  
At5g51105	chr5:020777632	0.0	W/20777632-20778003	AT5G51105.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09545.1); Has 70 Blast hits to 67 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G51105.1p  transcript_id AT5G51105.1  protein_id AT5G51105.1p  transcript_id AT5G51105.1  
At5g51110	chr5:020779006	0.0	C/20779006-20779380,20778486-20778681,20778316-20778407	AT5G51110.1  CDS  gene_syn MWD22.5, MWD22_5  go_component chloroplast|GO:0009507|18431481|IDA  go_process tetrahydrobiopterin biosynthetic process|GO:0006729||IEA  go_function 4-alpha-hydroxytetrahydrobiopterin dehydratase activity|GO:0008124||IEA  product 4-alpha-hydroxytetrahydrobiopterin dehydratase  note 4-alpha-hydroxytetrahydrobiopterin dehydratase; FUNCTIONS IN: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; INVOLVED IN: tetrahydrobiopterin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional coactivator/pterin dehydratase (InterPro:IPR001533); BEST Arabidopsis thaliana protein match is: dehydratase family (TAIR:AT1G29810.1); Has 1563 Blast hits to 1563 proteins in 256 species: Archae - 17; Bacteria - 489; Metazoa - 0; Fungi - 2; Plants - 42; Viruses - 0; Other Eukaryotes - 1013 (source: NCBI BLink).  protein_id AT5G51110.1p  transcript_id AT5G51110.1  protein_id AT5G51110.1p  transcript_id AT5G51110.1  
At5g51120	chr5:020779760	0.0	W/20779760-20779915,20780015-20780117,20780387-20780454,20780699-20780890,20780975-20781093,20781196-20781241	AT5G51120.1  CDS  gene_syn ATPABN1, MWD22.6, MWD22_6, PABN1, POLYADENYLATE-BINDING PROTEIN 1  gene PABN1  function Encodes a homolog of the protein PABN1, a polyadenylation factor subunit.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  go_function protein binding|GO:0005515|16282318|IPI  go_function poly(A) binding|GO:0008143|16282318|IDA  product PABN1 (POLYADENYLATE-BINDING PROTEIN 1); RNA binding / poly(A) binding / protein binding  note POLYADENYLATE-BINDING PROTEIN 1 (PABN1); FUNCTIONS IN: protein binding, RNA binding, poly(A) binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: polyadenylate-binding protein family protein / PABP family protein (TAIR:AT5G10350.2); Has 5900 Blast hits to 5457 proteins in 448 species: Archae - 6; Bacteria - 656; Metazoa - 2575; Fungi - 1031; Plants - 913; Viruses - 18; Other Eukaryotes - 701 (source: NCBI BLink).  protein_id AT5G51120.1p  transcript_id AT5G51120.1  protein_id AT5G51120.1p  transcript_id AT5G51120.1  
At5g51130	chr5:020781896	0.0	W/20781896-20782117,20782214-20782328,20782530-20782577,20782702-20782960,20783232-20783319,20783397-20783462,20783550-20783618,20783812-20783901	AT5G51130.1  CDS  gene_syn MWD22.7, MWD22_7  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product methyltransferase  note methyltransferase; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bicoid-interacting 3 (InterPro:IPR010675), Methyltransferase type 12 (InterPro:IPR013217); Has 417 Blast hits to 354 proteins in 99 species: Archae - 0; Bacteria - 49; Metazoa - 286; Fungi - 18; Plants - 19; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT5G51130.1p  transcript_id AT5G51130.1  protein_id AT5G51130.1p  transcript_id AT5G51130.1  
At5g51140	chr5:020786640	0.0	C/20786640-20786793,20786516-20786559,20786360-20786437,20786173-20786273,20785982-20786069,20785691-20785769,20785513-20785595,20785337-20785402,20785057-20785113,20784834-20784962,20784462-20784670,20784277-20784376	AT5G51140.1  CDS  gene_syn MWD22.8, MWD22_8  go_process pseudouridine synthesis|GO:0001522||IEA  go_component cellular_component|GO:0005575||ND  go_function pseudouridine synthase activity|GO:0009982|18599582|TAS  go_function pseudouridine synthase activity|GO:0009982||ISS  product pseudouridine synthase family protein  note pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, RluD (InterPro:IPR006225), Pseudouridine synthase (InterPro:IPR006145), RNA-binding S4 (InterPro:IPR002942), Pseudouridine synthase, conserved site (InterPro:IPR006224); BEST Arabidopsis thaliana protein match is: pseudouridine synthase family protein (TAIR:AT3G52260.2); Has 11525 Blast hits to 11502 proteins in 1471 species: Archae - 12; Bacteria - 7353; Metazoa - 224; Fungi - 130; Plants - 108; Viruses - 0; Other Eukaryotes - 3698 (source: NCBI BLink).  protein_id AT5G51140.1p  transcript_id AT5G51140.1  protein_id AT5G51140.1p  transcript_id AT5G51140.1  
At5g51150	chr5:020789034	0.0	W/20789034-20789375,20789548-20789687,20789827-20789926,20790020-20790118,20790276-20790623,20790734-20790826,20790931-20791137,20791229-20791495	AT5G51150.1  CDS  gene_syn MWD22.9, MWD22_9  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34630.1); Has 381 Blast hits to 298 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 209; Fungi - 87; Plants - 35; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT5G51150.1p  transcript_id AT5G51150.1  protein_id AT5G51150.1p  transcript_id AT5G51150.1  
At5g51160	chr5:020792280	0.0	W/20792280-20792783,20792857-20793681	AT5G51160.1  CDS  gene_syn MWD22.10, MWD22_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT4G10720.2); Has 19441 Blast hits to 9219 proteins in 402 species: Archae - 30; Bacteria - 1030; Metazoa - 11449; Fungi - 756; Plants - 1298; Viruses - 45; Other Eukaryotes - 4833 (source: NCBI BLink).  protein_id AT5G51160.1p  transcript_id AT5G51160.1  protein_id AT5G51160.1p  transcript_id AT5G51160.1  
At5g51170	chr5:020795174	0.0	C/20795174-20795330,20794985-20795077,20794555-20794801,20794376-20794476,20794217-20794277,20794046-20794103	AT5G51170.2  CDS  gene_syn MWD22.11, MWD22_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 127 Blast hits to 127 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 93; Fungi - 12; Plants - 15; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G51170.2p  transcript_id AT5G51170.2  protein_id AT5G51170.2p  transcript_id AT5G51170.2  
At5g51170	chr5:020795174	0.0	C/20795174-20795330,20794985-20795077,20794555-20794801,20794380-20794476,20794217-20794282,20793906-20794103	AT5G51170.1  CDS  gene_syn MWD22.11, MWD22_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 155 Blast hits to 155 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 97; Fungi - 22; Plants - 20; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT5G51170.1p  transcript_id AT5G51170.1  protein_id AT5G51170.1p  transcript_id AT5G51170.1  
At5g51174	chr5:020795936	0.0	W/20795936-20796051	AT5G51174.1  snoRNA  gene_syn SMALL NUCLEOLAR RNA 30, SNOR30  gene SNOR30  function Encodes a C/D box snoRNA (snoR30). Gb: AJ505639  go_component box C/D snoRNP complex|GO:0031428||TAS  go_process rRNA methylation|GO:0031167||TAS  go_function molecular_function|GO:0003674||ND  product SNOR30 (SMALL NUCLEOLAR RNA 30); snoRNA  transcript_id AT5G51174.1  
At5g51180	chr5:020797360	0.0	W/20797360-20797496,20797605-20797672,20797919-20797989,20798070-20798312,20798653-20798816,20798908-20798963,20799049-20799101,20799191-20799302,20799539-20799636,20799858-20799929	AT5G51180.1  CDS  gene_syn MWD22.12, MWD22_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF676, hydrolase-like (InterPro:IPR007751); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25770.1); Has 499 Blast hits to 490 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 114; Fungi - 189; Plants - 98; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT5G51180.1p  transcript_id AT5G51180.1  protein_id AT5G51180.1p  transcript_id AT5G51180.1  
At5g51180	chr5:020797360	0.0	W/20797360-20797496,20797605-20797672,20797919-20797989,20798070-20798312,20798653-20798816,20798908-20798963,20799049-20799101,20799191-20799302,20799539-20799636,20799858-20799929	AT5G51180.2  CDS  gene_syn MWD22.12, MWD22_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF676, hydrolase-like (InterPro:IPR007751); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25770.1); Has 499 Blast hits to 490 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 114; Fungi - 189; Plants - 98; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT5G51180.2p  transcript_id AT5G51180.2  protein_id AT5G51180.2p  transcript_id AT5G51180.2  
At5g51190	chr5:020800708	0.0	C/20800708-20801373	AT5G51190.1  CDS  gene_syn MWD22.13, MWD22_13  function encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to chitin|GO:0010200|17722694|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to chitin, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene-responsive element-binding family protein (TAIR:AT5G61600.1); Has 3825 Blast hits to 3676 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3814; Viruses - 2; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT5G51190.1p  transcript_id AT5G51190.1  protein_id AT5G51190.1p  transcript_id AT5G51190.1  
At5g51195	chr5:020803736	0.0	C/20803736-20804268,20803521-20803659,20803106-20803237	AT5G51195.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G13450.1); Has 50 Blast hits to 50 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G51195.1p  transcript_id AT5G51195.1  protein_id AT5G51195.1p  transcript_id AT5G51195.1  
At5g51200	chr5:020804926	0.0	W/20804926-20805066,20805151-20805246,20805480-20805554,20805656-20805760,20805851-20805961,20806137-20806296,20806812-20806897,20807010-20807132,20807246-20807473,20808155-20808244,20808647-20808772,20809044-20809160,20809253-20809459,20809650-20809751,20809870-20810007,20810389-20810519,20810664-20810726,20810929-20811052,20811159-20811356,20811922-20812043,20812249-20812399,20812544-20812656,20812728-20812809,20812914-20813000,20813129-20813206,20813898-20814101,20814502-20814594,20814668-20814781,20814879-20815049,20815162-20815217,20815303-20815375,20815447-20815637,20815763-20815889,20815969-20816046,20816119-20816283,20816792-20816956,20817040-20817177,20817728-20817871,20818007-20818111,20818248-20818334,20818436-20818567,20818653-20818753,20818912-20819031,20819126-20819243,20819328-20819408	AT5G51200.1  CDS  gene_syn MWD22.15, MWD22_15  go_component chloroplast|GO:0009507|15028209|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; Has 176 Blast hits to 143 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 134; Fungi - 19; Plants - 20; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G51200.1p  transcript_id AT5G51200.1  protein_id AT5G51200.1p  transcript_id AT5G51200.1  
At5g51210	chr5:020820171	0.0	W/20820171-20820475,20820586-20820706	AT5G51210.1  CDS  gene_syn MWD22.16, MWD22_16, OLEO3, OLEOSIN3  gene OLEO3  function Encodes oleosin3, a protein found in oil bodies, involved in seed lipid accumulation.  go_component monolayer-surrounded lipid storage body|GO:0012511||IEA  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  go_process lipid storage|GO:0019915||ISS  go_function molecular_function|GO:0003674||ND  product OLEO3 (OLEOSIN3)  note OLEOSIN3 (OLEO3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lipid storage; LOCATED IN: monolayer-surrounded lipid storage body, integral to membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136); BEST Arabidopsis thaliana protein match is: OLEO1 (OLEOSIN 1) (TAIR:AT4G25140.1); Has 394 Blast hits to 394 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 394; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G51210.1p  transcript_id AT5G51210.1  protein_id AT5G51210.1p  transcript_id AT5G51210.1  
At5g51220	chr5:020822958	0.0	C/20822958-20823125,20822416-20822629,20822152-20822318,20821924-20822048,20821721-20821781,20821568-20821616,20821405-20821466	AT5G51220.1  CDS  gene_syn MWD22.17, MWD22_17  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ubiquinol-cytochrome C chaperone family protein  note ubiquinol-cytochrome C chaperone family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Ubiquinol-cytochrome C chaperone (InterPro:IPR007129); Has 361 Blast hits to 361 proteins in 132 species: Archae - 0; Bacteria - 99; Metazoa - 154; Fungi - 36; Plants - 23; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT5G51220.1p  transcript_id AT5G51220.1  protein_id AT5G51220.1p  transcript_id AT5G51220.1  
At5g51230	chr5:020824153	0.0	W/20824153-20824190,20824363-20824510,20824728-20824783,20824930-20825044,20825142-20825301,20825394-20825444,20825652-20825791,20825996-20826058,20826149-20826270,20826513-20826577,20826676-20826728,20826837-20826890,20826974-20827033,20827454-20827500,20827584-20827684,20827852-20828071,20828228-20828276,20828352-20828435,20828782-20828861,20829065-20829154,20829245-20829344	AT5G51230.1  CDS  gene_syn AT5G51240, CYR1, CYTOKININ RESISTANT 1, EMBRYONIC FLOWER 2, EMF2, MWD22.18, MWD22_18, VEF2  gene EMF2  function Polycomb group protein with zinc finger domain involved in negative regulation of reproductive development. Forms a complex with FIE, CLF, and MSI1. This complex modulates the expression of target genes including AG, PI and AP3.  go_component nucleus|GO:0005634|11701882|ISS  go_process genetic imprinting|GO:0006349|16527743|IMP  go_process negative regulation of flower development|GO:0009910|9401124|IMP  go_function DNA binding|GO:0003677|11701882|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product EMF2 (EMBRYONIC FLOWER 2); DNA binding / transcription factor  note EMBRYONIC FLOWER 2 (EMF2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: genetic imprinting, negative regulation of flower development; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: VRN2 (REDUCED VERNALIZATION RESPONSE 2); transcription factor (TAIR:AT4G16845.1); Has 232 Blast hits to 178 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G51230.1p  transcript_id AT5G51230.1  protein_id AT5G51230.1p  transcript_id AT5G51230.1  
At5g51230	chr5:020824153	0.0	W/20824153-20824190,20824363-20824510,20824728-20824783,20824930-20825044,20825142-20825301,20825394-20825444,20825652-20825791,20825996-20826058,20826149-20826270,20826513-20826577,20826676-20826728,20826837-20826890,20826974-20827033,20827454-20827500,20827599-20827684,20827852-20828071,20828228-20828276,20828352-20828435,20828782-20828861,20829065-20829154,20829245-20829344	AT5G51230.2  CDS  gene_syn AT5G51240, CYR1, CYTOKININ RESISTANT 1, EMBRYONIC FLOWER 2, EMF2, MWD22.18, MWD22_18, VEF2  gene EMF2  function Polycomb group protein with zinc finger domain involved in negative regulation of reproductive development. Forms a complex with FIE, CLF, and MSI1. This complex modulates the expression of target genes including AG, PI and AP3.  go_component nucleus|GO:0005634|11701882|ISS  go_process genetic imprinting|GO:0006349|16527743|IMP  go_process negative regulation of flower development|GO:0009910|9401124|IMP  go_function DNA binding|GO:0003677|11701882|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product EMF2 (EMBRYONIC FLOWER 2); DNA binding / transcription factor  note EMBRYONIC FLOWER 2 (EMF2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: genetic imprinting, negative regulation of flower development; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: VRN2 (REDUCED VERNALIZATION RESPONSE 2); transcription factor (TAIR:AT4G16845.1); Has 232 Blast hits to 178 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G51230.2p  transcript_id AT5G51230.2  protein_id AT5G51230.2p  transcript_id AT5G51230.2  
At5g51230	chr5:020824153	0.0	W/20824153-20824190,20824363-20824510,20824728-20824783,20824930-20825044,20825142-20825301,20825394-20825444,20825652-20825791,20825996-20826058,20826149-20826270,20826513-20826577,20826676-20826728,20826837-20826890,20826974-20827033,20827454-20827500,20827599-20827684,20827852-20828071,20828228-20828276,20828352-20828435,20828782-20828861,20829065-20829154,20829245-20829344	AT5G51230.3  CDS  gene_syn AT5G51240, CYR1, CYTOKININ RESISTANT 1, EMBRYONIC FLOWER 2, EMF2, MWD22.18, MWD22_18, VEF2  gene EMF2  function Polycomb group protein with zinc finger domain involved in negative regulation of reproductive development. Forms a complex with FIE, CLF, and MSI1. This complex modulates the expression of target genes including AG, PI and AP3.  go_component nucleus|GO:0005634|11701882|ISS  go_process genetic imprinting|GO:0006349|16527743|IMP  go_process negative regulation of flower development|GO:0009910|9401124|IMP  go_function DNA binding|GO:0003677|11701882|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product EMF2 (EMBRYONIC FLOWER 2); DNA binding / transcription factor  note EMBRYONIC FLOWER 2 (EMF2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: genetic imprinting, negative regulation of flower development; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: VRN2 (REDUCED VERNALIZATION RESPONSE 2); transcription factor (TAIR:AT4G16845.1); Has 232 Blast hits to 178 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G51230.3p  transcript_id AT5G51230.3  protein_id AT5G51230.3p  transcript_id AT5G51230.3  
At5g51250	chr5:020830743	0.0	W/20830743-20831849	AT5G51250.1  CDS  gene_syn MWD22.20, MWD22_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT5G38680.1); Has 725 Blast hits to 705 proteins in 64 species: Archae - 2; Bacteria - 21; Metazoa - 135; Fungi - 0; Plants - 552; Viruses - 1; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT5G51250.1p  transcript_id AT5G51250.1  protein_id AT5G51250.1p  transcript_id AT5G51250.1  
At5g51260	chr5:020833081	0.0	C/20833081-20833466,20832712-20832921,20832222-20832399	AT5G51260.1  CDS  gene_syn MWD22.21, MWD22_21  go_component endomembrane system|GO:0012505||IEA  go_function acid phosphatase activity|GO:0003993||IEA  go_process biological_process|GO:0008150||ND  go_function acid phosphatase activity|GO:0003993||ISS  product acid phosphatase, putative  note acid phosphatase, putative; FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519), Vegetative storage protein/acid phosphatase (InterPro:IPR014403), Acid phosphatase, plant (InterPro:IPR010028); BEST Arabidopsis thaliana protein match is: acid phosphatase, putative (TAIR:AT4G25150.1); Has 538 Blast hits to 538 proteins in 152 species: Archae - 0; Bacteria - 252; Metazoa - 2; Fungi - 0; Plants - 237; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT5G51260.1p  transcript_id AT5G51260.1  protein_id AT5G51260.1p  transcript_id AT5G51260.1  
At5g51270	chr5:020838028	0.0	C/20838028-20838262,20837819-20837943,20837599-20837762,20837324-20837511,20836917-20837233,20836733-20836831,20836258-20836638,20835401-20836168,20835137-20835319	AT5G51270.1  CDS  gene_syn MWD22.22, MWD22_22  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: embryo, flower; EXPRESSED DURING: C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G25160.1); Has 81073 Blast hits to 79962 proteins in 3087 species: Archae - 56; Bacteria - 7464; Metazoa - 35250; Fungi - 5889; Plants - 18784; Viruses - 247; Other Eukaryotes - 13383 (source: NCBI BLink).  protein_id AT5G51270.1p  transcript_id AT5G51270.1  protein_id AT5G51270.1p  transcript_id AT5G51270.1  
At5g51280	chr5:020841456	0.0	W/20841456-20842366,20842781-20843645	AT5G51280.1  CDS  gene_syn MWD22.23, MWD22_23  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD-box protein abstrakt, putative  note DEAD-box protein abstrakt, putative; FUNCTIONS IN: helicase activity, zinc ion binding, ATP-dependent helicase activity, nucleic acid binding, ATP binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, CCHC-type (InterPro:IPR001878), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD-box protein abstrakt, putative (TAIR:AT4G33370.1); Has 30542 Blast hits to 29925 proteins in 1801 species: Archae - 558; Bacteria - 12691; Metazoa - 5297; Fungi - 3483; Plants - 1447; Viruses - 10; Other Eukaryotes - 7056 (source: NCBI BLink).  protein_id AT5G51280.1p  transcript_id AT5G51280.1  protein_id AT5G51280.1p  transcript_id AT5G51280.1  
At5g51290	chr5:020847999	0.0	C/20847999-20848157,20847591-20847761,20847342-20847509,20847161-20847253,20846641-20846733,20846166-20846376,20846053-20846076,20845849-20845936,20845424-20845573,20845105-20845206,20844605-20844967,20844464-20844530,20844252-20844389	AT5G51290.1  CDS  gene_syn MWD22.24, MWD22_24  go_process activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|GO:0007205||IEA  go_function diacylglycerol kinase activity|GO:0004143||IEA  go_component cellular_component|GO:0005575||ND  product ceramide kinase-related  note ceramide kinase-related; FUNCTIONS IN: diacylglycerol kinase activity; INVOLVED IN: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Diacylglycerol kinase, catalytic region (InterPro:IPR001206); BEST Arabidopsis thaliana protein match is: ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1); D-erythro-sphingosine kinase/ diacylglycerol kinase (TAIR:AT5G23450.3); Has 936 Blast hits to 786 proteins in 187 species: Archae - 0; Bacteria - 133; Metazoa - 432; Fungi - 90; Plants - 135; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).  protein_id AT5G51290.1p  transcript_id AT5G51290.1  protein_id AT5G51290.1p  transcript_id AT5G51290.1  
At5g51300	chr5:020849881	0.0	C/20849881-20852295	AT5G51300.1  CDS  gene_syn MWD22.25, MWD22_25  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process RNA splicing|GO:0008380|16807317|NAS  product splicing factor-related  note splicing factor-related; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: RNA splicing; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111), RNA recognition motif, RNP-1 (InterPro:IPR000504), K Homology, type 1 (InterPro:IPR004088), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT3G08620.1); Has 69221 Blast hits to 42347 proteins in 1380 species: Archae - 38; Bacteria - 5736; Metazoa - 34755; Fungi - 10953; Plants - 9084; Viruses - 1148; Other Eukaryotes - 7507 (source: NCBI BLink).  protein_id AT5G51300.1p  transcript_id AT5G51300.1  protein_id AT5G51300.1p  transcript_id AT5G51300.1  
At5g51300	chr5:020849881	0.0	C/20849881-20852295	AT5G51300.2  CDS  gene_syn MWD22.25, MWD22_25  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process RNA splicing|GO:0008380|16807317|NAS  product splicing factor-related  note splicing factor-related; FUNCTIONS IN: RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA splicing; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111), RNA recognition motif, RNP-1 (InterPro:IPR000504), K Homology, type 1 (InterPro:IPR004088), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT3G08620.1); Has 69221 Blast hits to 42347 proteins in 1380 species: Archae - 38; Bacteria - 5736; Metazoa - 34755; Fungi - 10953; Plants - 9084; Viruses - 1148; Other Eukaryotes - 7507 (source: NCBI BLink).  protein_id AT5G51300.2p  transcript_id AT5G51300.2  protein_id AT5G51300.2p  transcript_id AT5G51300.2  
At5g51300	chr5:020849881	0.0	C/20849881-20852295	AT5G51300.3  CDS  gene_syn MWD22.25, MWD22_25  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process RNA splicing|GO:0008380|16807317|NAS  product splicing factor-related  note splicing factor-related; FUNCTIONS IN: RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA splicing; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111), RNA recognition motif, RNP-1 (InterPro:IPR000504), K Homology, type 1 (InterPro:IPR004088), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT3G08620.1); Has 69221 Blast hits to 42347 proteins in 1380 species: Archae - 38; Bacteria - 5736; Metazoa - 34755; Fungi - 10953; Plants - 9084; Viruses - 1148; Other Eukaryotes - 7507 (source: NCBI BLink).  protein_id AT5G51300.3p  transcript_id AT5G51300.3  protein_id AT5G51300.3p  transcript_id AT5G51300.3  
At5g51310	chr5:020854363	0.0	C/20854363-20854718,20852854-20853499	AT5G51310.1  CDS  gene_syn MWD22.26, MWD22_26  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process gibberellin biosynthetic process|GO:0009686|7630935|IDA  product gibberellin 20-oxidase-related  note gibberellin 20-oxidase-related; FUNCTIONS IN: oxidoreductase activity, iron ion binding; INVOLVED IN: gibberellin biosynthetic process; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G23340.1); Has 5273 Blast hits to 5264 proteins in 641 species: Archae - 0; Bacteria - 647; Metazoa - 119; Fungi - 547; Plants - 2845; Viruses - 0; Other Eukaryotes - 1115 (source: NCBI BLink).  protein_id AT5G51310.1p  transcript_id AT5G51310.1  protein_id AT5G51310.1p  transcript_id AT5G51310.1  
At5g51320	chr5:020856069	0.0	C/20856069-20856864	AT5G51320.1  mRNA_TE_gene  pseudo  gene_syn MFG13.2, MFG13_2  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42556.1); contains InterPro domain Protein of unknown function DUF321; (InterPro:IPR005529)  
At5g51330	chr5:020861675	0.0	C/20861675-20861680,20861287-20861368,20861094-20861194,20860279-20860988,20859808-20860191,20859610-20859718,20859440-20859523,20858752-20859195	AT5G51330.1  CDS  gene_syn DYAD, MFG13.3, MFG13_3, SWI1, SWITCH1  gene SWI1  function Encodes novel protein involved in sister chromatid cohesion and meiotic chromosome organization during both male and female meiosis. Gene has two alternate transcripts which produce two similar proteins, one 57 aa shorter than the other.  go_function phospholipase C activity|GO:0004629||IEA  go_component nucleus|GO:0005634|11459834|IDA  go_process male meiosis sister chromatid cohesion|GO:0007065|11459834|IMP  go_process female meiosis sister chromatid cohesion|GO:0007066|11459834|IMP  go_process reciprocal meiotic recombination|GO:0007131|12783800|IMP  product SWI1 (SWITCH1); phospholipase C  note SWITCH1 (SWI1); FUNCTIONS IN: phospholipase C activity; INVOLVED IN: reciprocal meiotic recombination, male meiosis sister chromatid cohesion, female meiosis sister chromatid cohesion; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific , X region (InterPro:IPR000909); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23610.2); Has 444 Blast hits to 396 proteins in 71 species: Archae - 2; Bacteria - 16; Metazoa - 146; Fungi - 14; Plants - 57; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink).  protein_id AT5G51330.1p  transcript_id AT5G51330.1  protein_id AT5G51330.1p  transcript_id AT5G51330.1  
At5g51340	chr5:020863594	0.0	W/20863594-20864106,20864185-20864301,20864399-20864897,20865184-20865222,20865322-20865443,20865656-20865802,20865942-20866031,20866130-20866254,20866457-20866662,20866753-20866877,20866974-20867171	AT5G51340.1  CDS  gene_syn MFG13.4, MFG13_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 149 Blast hits to 96 proteins in 39 species: Archae - 0; Bacteria - 2; Metazoa - 115; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G51340.1p  transcript_id AT5G51340.1  protein_id AT5G51340.1p  transcript_id AT5G51340.1  
At5g51350	chr5:020868245	0.0	C/20868245-20870621,20867860-20868170	AT5G51350.1  CDS  gene_syn MFG13.5, MFG13_5  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT5G61480.1); Has 68844 Blast hits to 28909 proteins in 838 species: Archae - 29; Bacteria - 3219; Metazoa - 20839; Fungi - 694; Plants - 39080; Viruses - 14; Other Eukaryotes - 4969 (source: NCBI BLink).  protein_id AT5G51350.1p  transcript_id AT5G51350.1  protein_id AT5G51350.1p  transcript_id AT5G51350.1  
At5g51360	chr5:020871918	0.0	W/20871918-20872277	AT5G51360.1  CDS  gene_syn MFG13.7, MFG13_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: TFIIS N-terminal (InterPro:IPR017923); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50373.1); Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G51360.1p  transcript_id AT5G51360.1  protein_id AT5G51360.1p  transcript_id AT5G51360.1  
At5g51370	chr5:020872783	0.0	W/20872783-20873846,20873916-20874192	AT5G51370.2  CDS  gene_syn MFG13.8, MFG13_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G51380.1); Has 2420 Blast hits to 1498 proteins in 134 species: Archae - 0; Bacteria - 104; Metazoa - 1258; Fungi - 120; Plants - 705; Viruses - 0; Other Eukaryotes - 233 (source: NCBI BLink).  protein_id AT5G51370.2p  transcript_id AT5G51370.2  protein_id AT5G51370.2p  transcript_id AT5G51370.2  
At5g51370	chr5:020872783	0.0	W/20872783-20873850	AT5G51370.1  CDS  gene_syn MFG13.8, MFG13_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G51380.1); Has 1602 Blast hits to 987 proteins in 109 species: Archae - 0; Bacteria - 20; Metazoa - 854; Fungi - 53; Plants - 550; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).  protein_id AT5G51370.1p  transcript_id AT5G51370.1  protein_id AT5G51370.1p  transcript_id AT5G51370.1  
At5g51380	chr5:020875945	0.0	W/20875945-20877116,20877512-20877779	AT5G51380.1  CDS  gene_syn MFG13.9, MFG13_9  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G51370.2); Has 2623 Blast hits to 1503 proteins in 138 species: Archae - 0; Bacteria - 100; Metazoa - 1332; Fungi - 160; Plants - 768; Viruses - 0; Other Eukaryotes - 263 (source: NCBI BLink).  protein_id AT5G51380.1p  transcript_id AT5G51380.1  protein_id AT5G51380.1p  transcript_id AT5G51380.1  
At5g51390	chr5:020878064	0.0	C/20878064-20878405	AT5G51390.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G51390.1p  transcript_id AT5G51390.1  protein_id AT5G51390.1p  transcript_id AT5G51390.1  
At5g51400	chr5:020880034	0.0	C/20880034-20880036,20879850-20879957,20879484-20879598,20879108-20879376,20878784-20879014	AT5G51400.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45010.1); Has 288 Blast hits to 287 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 4; Plants - 275; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G51400.1p  transcript_id AT5G51400.1  protein_id AT5G51400.1p  transcript_id AT5G51400.1  
At5g51410	chr5:020883535	0.0	C/20883535-20883577,20883273-20883401,20883151-20883190,20882900-20882975,20882616-20882816,20882224-20882433,20881821-20882126	AT5G51410.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||TAS  product LUC7 N_terminus domain-containing protein  note LUC7 N_terminus domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LUC7 related (InterPro:IPR004882); BEST Arabidopsis thaliana protein match is: UNE6 (unfertilized embryo sac 6) (TAIR:AT3G03340.1); Has 10808 Blast hits to 5510 proteins in 261 species: Archae - 5; Bacteria - 114; Metazoa - 6312; Fungi - 1583; Plants - 829; Viruses - 20; Other Eukaryotes - 1945 (source: NCBI BLink).  protein_id AT5G51410.1p  transcript_id AT5G51410.1  protein_id AT5G51410.1p  transcript_id AT5G51410.1  
At5g51410	chr5:020883535	0.0	C/20883535-20883577,20883273-20883401,20883151-20883190,20882900-20882975,20882616-20882816,20882224-20882433,20881821-20882126	AT5G51410.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||TAS  product LUC7 N_terminus domain-containing protein  note LUC7 N_terminus domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LUC7 related (InterPro:IPR004882); BEST Arabidopsis thaliana protein match is: UNE6 (unfertilized embryo sac 6) (TAIR:AT3G03340.1); Has 10808 Blast hits to 5510 proteins in 261 species: Archae - 5; Bacteria - 114; Metazoa - 6312; Fungi - 1583; Plants - 829; Viruses - 20; Other Eukaryotes - 1945 (source: NCBI BLink).  protein_id AT5G51410.2p  transcript_id AT5G51410.2  protein_id AT5G51410.2p  transcript_id AT5G51410.2  
At5g51420	chr5:020885419	0.0	C/20885419-20886726	AT5G51420.1  CDS  gene_syn MFG13.13, MFG13_13  go_function acyltransferase activity|GO:0008415||ISS  product long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein  note long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein; FUNCTIONS IN: acyltransferase activity; BEST Arabidopsis thaliana protein match is: membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related (TAIR:AT5G55350.1); Has 202 Blast hits to 199 proteins in 51 species: Archae - 0; Bacteria - 87; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G51420.1p  transcript_id AT5G51420.1  protein_id AT5G51420.1p  transcript_id AT5G51420.1  
At5g51430	chr5:020890511	0.0	C/20890511-20890795,20890314-20890403,20890105-20890224,20889924-20890025,20889548-20889828,20889265-20889410,20888660-20888858,20887842-20888514,20887410-20887745,20887044-20887322	AT5G51430.1  CDS  gene_syn EMBRYO YELLOW, EYE, MFG13.14, MFG13_14  gene EYE  function Encodes a protein that is homologous to Cog7, a subunit of the conserved oligomeric Golgi (COG) complex, which is required for the normal morphology and function of the Golgi apparatus. It is likely to be involved in transport or retention of Golgi-localized proteins and in maintenance of Golgi morphology.  go_component cellular_component|GO:0005575||ND  go_process Golgi organization|GO:0007030|18422605|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|18422605|IMP  go_process meristem structural organization|GO:0009933|18422605|IMP  go_process shoot morphogenesis|GO:0010016|18422605|IMP  go_process cell growth|GO:0016049|18422605|IMP  go_process protein retention in Golgi apparatus|GO:0045053|18422605|IMP  go_process meristem development|GO:0048507|18422605|IMP  go_function molecular_function|GO:0003674||ND  product EYE (EMBRYO YELLOW)  note EMBRYO YELLOW (EYE); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 7 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 172 Blast hits to 162 proteins in 65 species: Archae - 2; Bacteria - 0; Metazoa - 108; Fungi - 12; Plants - 32; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT5G51430.1p  transcript_id AT5G51430.1  protein_id AT5G51430.1p  transcript_id AT5G51430.1  
At5g51440	chr5:020891242	0.0	W/20891242-20891446,20891586-20892013	AT5G51440.1  CDS  gene_syn MFG13.15, MFG13_15  go_process response to heat|GO:0009408||ISS  go_function molecular_function|GO:0003674||ND  product 23.5 kDa mitochondrial small heat shock protein (HSP23.5-M)  note 23.5 kDa mitochondrial small heat shock protein (HSP23.5-M); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to heat; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: ATHSP23.6-MITO (MITOCHONDRION-LOCALIZED SMALL HEAT SHOCK PROTEIN 23.6) (TAIR:AT4G25200.1); Has 2564 Blast hits to 2564 proteins in 629 species: Archae - 92; Bacteria - 1263; Metazoa - 2; Fungi - 89; Plants - 842; Viruses - 0; Other Eukaryotes - 276 (source: NCBI BLink).  protein_id AT5G51440.1p  transcript_id AT5G51440.1  protein_id AT5G51440.1p  transcript_id AT5G51440.1  
At5g51450	chr5:020893164	0.0	W/20893164-20893400,20893794-20893871,20894168-20894254,20894355-20894476,20894988-20895084,20895191-20895296,20895424-20895581,20895690-20895827,20895907-20895974,20896061-20896279,20896549-20896915,20897167-20897223	AT5G51450.1  CDS  gene_syn MFG13.16, MFG13_16, RIN3, RPM1 INTERACTING PROTEIN 3  gene RIN3  function Encodes RING-finger type ubiquitin ligases.  go_process plant-type hypersensitive response|GO:0009626|16212605|IGI  go_function ubiquitin-protein ligase activity|GO:0004842|16212605|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16212605|ISS  go_function protein binding|GO:0005515|16212605|IPI  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product RIN3 (RPM1 INTERACTING PROTEIN 3); protein binding / ubiquitin-protein ligase/ zinc ion binding  note RPM1 INTERACTING PROTEIN 3 (RIN3); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: plant-type hypersensitive response; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Ubiquitin system component Cue (InterPro:IPR003892); BEST Arabidopsis thaliana protein match is: RIN2 (RPM1 INTERACTING PROTEIN 2); protein binding / ubiquitin-protein ligase/ zinc ion binding (TAIR:AT4G25230.2); Has 1597 Blast hits to 1570 proteins in 176 species: Archae - 0; Bacteria - 2; Metazoa - 686; Fungi - 186; Plants - 412; Viruses - 6; Other Eukaryotes - 305 (source: NCBI BLink).  protein_id AT5G51450.1p  transcript_id AT5G51450.1  protein_id AT5G51450.1p  transcript_id AT5G51450.1  
At5g51451	chr5:020898369	0.0	W/20898369-20898485,20898605-20898754	AT5G51451.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G51451.1p  transcript_id AT5G51451.1  protein_id AT5G51451.1p  transcript_id AT5G51451.1  
At5g51460	chr5:020902266	0.0	W/20902266-20902559,20902657-20902800,20902906-20902977,20903065-20903187,20903272-20903328,20903405-20903506,20903588-20903665,20903759-20903828,20903913-20903983,20904060-20904155,20904242-20904292	AT5G51460.1  CDS  gene_syn ATTPPA, MFG13.17, TREHALOSE-6-PHOSPHATE PHOSPHATASE  gene ATTPPA  function homologous to the C-terminal part of microbial trehalose-6-phosphate phosphatases  go_component chloroplast|GO:0009507||IEA  go_process trehalose biosynthetic process|GO:0005992|9681009|IDA  go_process trehalose biosynthetic process|GO:0005992||ISS  go_function trehalose-phosphatase activity|GO:0004805|9681009|IDA  go_function trehalose-phosphatase activity|GO:0004805||ISS  product ATTPPA; trehalose-phosphatase  note ATTPPA; FUNCTIONS IN: trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: trehalose-6-phosphate phosphatase, putative (TAIR:AT4G22590.1); Has 1407 Blast hits to 1403 proteins in 504 species: Archae - 29; Bacteria - 741; Metazoa - 195; Fungi - 102; Plants - 243; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).  protein_id AT5G51460.1p  transcript_id AT5G51460.1  protein_id AT5G51460.1p  transcript_id AT5G51460.1  
At5g51460	chr5:020902266	0.0	W/20902266-20902559,20902657-20902800,20902906-20902977,20903065-20903187,20903272-20903328,20903405-20903506,20903588-20903665,20903759-20903828,20903913-20903983,20904060-20904155,20904242-20904292	AT5G51460.3  CDS  gene_syn ATTPPA, MFG13.17, TREHALOSE-6-PHOSPHATE PHOSPHATASE  gene ATTPPA  function homologous to the C-terminal part of microbial trehalose-6-phosphate phosphatases  go_component chloroplast|GO:0009507||IEA  go_process trehalose biosynthetic process|GO:0005992|9681009|IDA  go_process trehalose biosynthetic process|GO:0005992||ISS  go_function trehalose-phosphatase activity|GO:0004805|9681009|IDA  go_function trehalose-phosphatase activity|GO:0004805||ISS  product ATTPPA; trehalose-phosphatase  note ATTPPA; FUNCTIONS IN: trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: trehalose-6-phosphate phosphatase, putative (TAIR:AT4G22590.1); Has 1407 Blast hits to 1403 proteins in 504 species: Archae - 29; Bacteria - 741; Metazoa - 195; Fungi - 102; Plants - 243; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).  protein_id AT5G51460.3p  transcript_id AT5G51460.3  protein_id AT5G51460.3p  transcript_id AT5G51460.3  
At5g51460	chr5:020902266	0.0	W/20902266-20902559,20902660-20902800,20902906-20902977,20903065-20903187,20903272-20903328,20903405-20903506,20903588-20903665,20903759-20903828,20903913-20903983,20904060-20904155,20904242-20904292	AT5G51460.2  CDS  gene_syn ATTPPA, MFG13.17, TREHALOSE-6-PHOSPHATE PHOSPHATASE  gene ATTPPA  function homologous to the C-terminal part of microbial trehalose-6-phosphate phosphatases  go_component chloroplast|GO:0009507||IEA  go_process trehalose biosynthetic process|GO:0005992|9681009|IDA  go_process trehalose biosynthetic process|GO:0005992||ISS  go_function trehalose-phosphatase activity|GO:0004805|9681009|IDA  go_function trehalose-phosphatase activity|GO:0004805||ISS  product ATTPPA; trehalose-phosphatase  note ATTPPA; FUNCTIONS IN: trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: trehalose-6-phosphate phosphatase, putative (TAIR:AT4G22590.1); Has 1405 Blast hits to 1401 proteins in 503 species: Archae - 29; Bacteria - 739; Metazoa - 195; Fungi - 101; Plants - 243; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT5G51460.2p  transcript_id AT5G51460.2  protein_id AT5G51460.2p  transcript_id AT5G51460.2  
At5g51470	chr5:020907287	0.0	W/20907287-20907573,20907714-20907815,20907904-20908685,20908766-20909340	AT5G51470.1  CDS  gene_syn K17N15.2, K17N15_2  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive GH3 family protein  note auxin-responsive GH3 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: auxin-responsive GH3 family protein (TAIR:AT1G23160.1); Has 645 Blast hits to 613 proteins in 103 species: Archae - 0; Bacteria - 158; Metazoa - 51; Fungi - 2; Plants - 218; Viruses - 0; Other Eukaryotes - 216 (source: NCBI BLink).  protein_id AT5G51470.1p  transcript_id AT5G51470.1  protein_id AT5G51470.1p  transcript_id AT5G51470.1  
At5g51480	chr5:020910433	0.0	W/20910433-20910573,20910777-20910886,20910980-20911250,20911345-20911480,20911662-20912028,20912116-20912484,20912576-20912654,20912759-20912958,20913048-20913153	AT5G51480.1  CDS  gene_syn K17N15.3, K17N15_3, SKS2, SKU5 SIMILAR 2  gene SKS2  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_function copper ion binding|GO:0005507||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function copper ion binding|GO:0005507||ISS  product SKS2 (SKU5 SIMILAR 2); copper ion binding / oxidoreductase  note SKU5 SIMILAR 2 (SKS2); FUNCTIONS IN: oxidoreductase activity, copper ion binding; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKS1 (SKU5 SIMILAR 1); copper ion binding / oxidoreductase (TAIR:AT4G25240.1); Has 3767 Blast hits to 3753 proteins in 669 species: Archae - 2; Bacteria - 1101; Metazoa - 259; Fungi - 1458; Plants - 790; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).  protein_id AT5G51480.1p  transcript_id AT5G51480.1  protein_id AT5G51480.1p  transcript_id AT5G51480.1  
At5g51490	chr5:020914694	0.0	C/20914694-20915606,20913680-20914377	AT5G51490.1  CDS  gene_syn K17N15.4, K17N15_4  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT5G51500.1); Has 1344 Blast hits to 1309 proteins in 181 species: Archae - 0; Bacteria - 239; Metazoa - 1; Fungi - 131; Plants - 966; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G51490.1p  transcript_id AT5G51490.1  protein_id AT5G51490.1p  transcript_id AT5G51490.1  
At5g51500	chr5:020918914	0.0	C/20918914-20919838,20917929-20918626	AT5G51500.1  CDS  gene_syn K17N15.5, K17N15_5  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: sperm cell, root, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT5G51490.1); Has 1316 Blast hits to 1281 proteins in 181 species: Archae - 0; Bacteria - 241; Metazoa - 1; Fungi - 131; Plants - 942; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G51500.1p  transcript_id AT5G51500.1  protein_id AT5G51500.1p  transcript_id AT5G51500.1  
At5g51510	chr5:020921512	0.0	W/20921512-20921593,20921681-20921736,20922007-20922130,20922224-20922330,20922558-20922621,20922739-20922818	AT5G51510.1  CDS  gene_syn K17N15.6, K17N15_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 19 Blast hits to 19 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G51510.1p  transcript_id AT5G51510.1  protein_id AT5G51510.1p  transcript_id AT5G51510.1  
At5g51520	chr5:020925980	0.0	W/20925980-20926594	AT5G51520.1  CDS  gene_syn K17N15.7, K17N15_7  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT4G25250.1); Has 426 Blast hits to 421 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 426; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G51520.1p  transcript_id AT5G51520.1  protein_id AT5G51520.1p  transcript_id AT5G51520.1  
At5g51530	chr5:020929562	0.0	C/20929562-20931502,20929357-20929485,20929149-20929256,20929015-20929061,20928772-20928932,20928577-20928680,20928239-20928517,20927942-20928154,20927707-20927854,20927488-20927618,20927308-20927400,20927118-20927213	AT5G51530.1  CDS  gene_syn K17N15.8, K17N15_8  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  product ubiquitin carboxyl-terminal hydrolase-related  note ubiquitin carboxyl-terminal hydrolase-related; FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: ubiquitin carboxyl-terminal hydrolase-related (TAIR:AT5G61950.1); Has 116 Blast hits to 104 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 109; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G51530.1p  transcript_id AT5G51530.1  protein_id AT5G51530.1p  transcript_id AT5G51530.1  
At5g51540	chr5:020932071	0.0	W/20932071-20932234,20932430-20932511,20932618-20932670,20932772-20932826,20933094-20933232,20933330-20933384,20933485-20933707,20933934-20934029,20934125-20934244,20934353-20934478,20934636-20934791,20934933-20935049,20935160-20935285,20935391-20935458,20935564-20935699,20935801-20935966,20936046-20936284	AT5G51540.1  CDS  gene_syn K17N15.9, K17N15_9  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process proteolysis|GO:0006508||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_process proteolysis|GO:0006508||ISS  go_function metalloendopeptidase activity|GO:0004222||ISS  product metalloendopeptidase  note metalloendopeptidase; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast thylakoid membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Peptidase M3A and M3B, thimet/oligopeptidase F (InterPro:IPR001567); BEST Arabidopsis thaliana protein match is: metalloendopeptidase (TAIR:AT1G67690.1); Has 3680 Blast hits to 3670 proteins in 924 species: Archae - 4; Bacteria - 1908; Metazoa - 290; Fungi - 366; Plants - 48; Viruses - 0; Other Eukaryotes - 1064 (source: NCBI BLink).  protein_id AT5G51540.1p  transcript_id AT5G51540.1  protein_id AT5G51540.1p  transcript_id AT5G51540.1  
At5g51545	chr5:020936434	0.0	W/20936434-20936845,20937098-20937243	AT5G51545.1  CDS  gene_syn LPA2, low psii accumulation2  gene LPA2  function Encodes LPA2 (low psii accumulation2), an intrinsic thylakoid membrane protein required for efficient assembly of Photosystem II.  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid membrane|GO:0042651|17601825|IDA  go_process photosystem II assembly|GO:0010207|17601825|IMP  product LPA2 (low psii accumulation2)  note low psii accumulation2 (LPA2); INVOLVED IN: photosystem II assembly; LOCATED IN: chloroplast, thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 21 Blast hits to 21 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G51545.1p  transcript_id AT5G51545.1  protein_id AT5G51545.1p  transcript_id AT5G51545.1  
At5g51550	chr5:020939793	0.0	C/20939793-20940806	AT5G51550.1  CDS  gene_syn EXL3, EXORDIUM LIKE 3, K17N15.10, K17N15_10  gene EXL3  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product EXL3 (EXORDIUM LIKE 3)  note EXORDIUM LIKE 3 (EXL3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphate-induced protein 1 conserved region (InterPro:IPR006766); BEST Arabidopsis thaliana protein match is: EXL5 (EXORDIUM LIKE 5) (TAIR:AT2G17230.1); Has 231 Blast hits to 231 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 229; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G51550.1p  transcript_id AT5G51550.1  protein_id AT5G51550.1p  transcript_id AT5G51550.1  
At5g51560	chr5:020945807	0.0	W/20945807-20946245,20946821-20947081,20947189-20948049,20948132-20948613	AT5G51560.1  CDS  gene_syn K17N15.11, K17N15_11  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT2G45340.1); Has 79325 Blast hits to 46601 proteins in 1344 species: Archae - 39; Bacteria - 2912; Metazoa - 23956; Fungi - 1932; Plants - 42697; Viruses - 172; Other Eukaryotes - 7617 (source: NCBI BLink).  protein_id AT5G51560.1p  transcript_id AT5G51560.1  protein_id AT5G51560.1p  transcript_id AT5G51560.1  
At5g51570	chr5:020949511	0.0	W/20949511-20949705,20949807-20949927,20950030-20950121,20950552-20950648,20950861-20951234	AT5G51570.1  CDS  gene_syn K17N15.12, K17N15_12  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  product band 7 family protein  note band 7 family protein; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: band 7 family protein (TAIR:AT5G62740.1); Has 3856 Blast hits to 3856 proteins in 1128 species: Archae - 126; Bacteria - 2499; Metazoa - 129; Fungi - 135; Plants - 159; Viruses - 18; Other Eukaryotes - 790 (source: NCBI BLink).  protein_id AT5G51570.1p  transcript_id AT5G51570.1  protein_id AT5G51570.1p  transcript_id AT5G51570.1  
At5g51580	chr5:020952442	0.0	C/20952442-20953161	AT5G51580.1  CDS  gene_syn K17N15.13, K17N15_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G51580.1p  transcript_id AT5G51580.1  protein_id AT5G51580.1p  transcript_id AT5G51580.1  
At5g51590	chr5:020958434	0.0	C/20958434-20958929,20957912-20957982,20957613-20957744,20957367-20957528,20956863-20957261	AT5G51590.1  CDS  gene_syn K17N15.14, K17N15_14  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product DNA-binding protein-related  note DNA-binding protein-related; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding, conserved site (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: DNA-binding protein-related (TAIR:AT4G25320.1); Has 887 Blast hits to 825 proteins in 101 species: Archae - 0; Bacteria - 8; Metazoa - 301; Fungi - 58; Plants - 449; Viruses - 14; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT5G51590.1p  transcript_id AT5G51590.1  protein_id AT5G51590.1p  transcript_id AT5G51590.1  
At5g51600	chr5:020964009	0.0	C/20964009-20964080,20963702-20963908,20963368-20963619,20963056-20963265,20962818-20962973,20962428-20962739,20962265-20962352,20962098-20962171,20961936-20962010,20961618-20961834,20961061-20961521	AT5G51600.1  CDS  gene_syn ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, ATMAP65-3, K17N15.15, K17N15_15, MAP65-3, MICROTUBULE-ASSOCIATED PROTEIN 65-3, PLE, PLEIADE  gene PLE  function Mutant has defective roots. Essential for giant cell ontogenesis. Role in organizing the mitotic microtubule array during both early and late mitosis in all plant organs.  go_component microtubule|GO:0005874|15469496|IDA  go_component phragmoplast|GO:0009524|15469496|IDA  go_component phragmoplast|GO:0009524|18263774|IDA  go_component phragmoplast|GO:0009524|19060108|IDA  go_component preprophase band|GO:0009574|19060108|IDA  go_component cortical microtubule|GO:0055028|19060108|IDA  go_process microtubule cytoskeleton organization|GO:0000226|18263774|IMP  go_process mitotic cell cycle|GO:0000278|18263774|IDA  go_process nuclear division|GO:0000280|18263774|IMP  go_process cytokinesis by cell plate formation|GO:0000911|12226511|IMP  go_process cytokinesis by cell plate formation|GO:0000911|18263774|IMP  go_process response to nematode|GO:0009624|18263774|IMP  go_process microtubule polymerization|GO:0046785|19060108|IDA  go_process anaphase|GO:0051322|19060108|IDA  go_process formation by symbiont of syncytium involving giant cell for nutrient acquisition from host|GO:0052096|18263774|IMP  go_function microtubule binding|GO:0008017|19060108|IDA  product PLE (PLEIADE); microtubule binding  note PLEIADE (PLE); FUNCTIONS IN: microtubule binding; INVOLVED IN: in 8 processes; LOCATED IN: cortical microtubule, microtubule, preprophase band, phragmoplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: MAP65/ASE1 (InterPro:IPR007145); BEST Arabidopsis thaliana protein match is: MAP65-9 (MICROTUBULE-ASSOCIATED PROTEIN 65-9) (TAIR:AT5G62250.1); Has 3763 Blast hits to 3073 proteins in 304 species: Archae - 91; Bacteria - 182; Metazoa - 2230; Fungi - 210; Plants - 279; Viruses - 1; Other Eukaryotes - 770 (source: NCBI BLink).  protein_id AT5G51600.1p  transcript_id AT5G51600.1  protein_id AT5G51600.1p  transcript_id AT5G51600.1  
At5g51610	chr5:020965577	0.0	W/20965577-20965793,20965872-20965927,20966267-20966330,20966594-20966805	AT5G51610.1  CDS  gene_syn K17N15.16, K17N15_16  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_component chloroplast|GO:0009507||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L11 family protein  note ribosomal protein L11 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular, chloroplast; EXPRESSED IN: shoot apex, embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein L11 (InterPro:IPR000911); BEST Arabidopsis thaliana protein match is: PRPL11 (PLASTID RIBOSOMAL PROTEIN L11); structural constituent of ribosome (TAIR:AT1G32990.1); Has 5435 Blast hits to 5435 proteins in 1540 species: Archae - 196; Bacteria - 2941; Metazoa - 84; Fungi - 81; Plants - 64; Viruses - 0; Other Eukaryotes - 2069 (source: NCBI BLink).  protein_id AT5G51610.1p  transcript_id AT5G51610.1  protein_id AT5G51610.1p  transcript_id AT5G51610.1  
At5g51620	chr5:020967172	0.0	W/20967172-20967174,20967504-20967606,20967695-20967741	AT5G51620.1  CDS  gene_syn K17N15.17, K17N15_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0172 (InterPro:IPR005366); BEST Arabidopsis thaliana protein match is: emb2731 (embryo defective 2731) (TAIR:AT5G55940.1); Has 22 Blast hits to 22 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G51620.1p  transcript_id AT5G51620.1  protein_id AT5G51620.1p  transcript_id AT5G51620.1  
At5g51620	chr5:020967172	0.0	W/20967172-20967174,20967504-20967606,20967699-20967765,20967951-20967984	AT5G51620.2  CDS  gene_syn K17N15.17, K17N15_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0172 (InterPro:IPR005366); BEST Arabidopsis thaliana protein match is: emb2731 (embryo defective 2731) (TAIR:AT5G55940.1); Has 28 Blast hits to 28 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G51620.2p  transcript_id AT5G51620.2  protein_id AT5G51620.2p  transcript_id AT5G51620.2  
At5g51620	chr5:020967172	0.0	W/20967172-20967174,20967504-20967650,20967951-20967959	AT5G51620.3  CDS  gene_syn K17N15.17, K17N15_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0172 (InterPro:IPR005366); BEST Arabidopsis thaliana protein match is: emb2731 (embryo defective 2731) (TAIR:AT5G55940.1); Has 23 Blast hits to 23 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G51620.3p  transcript_id AT5G51620.3  protein_id AT5G51620.3p  transcript_id AT5G51620.3  
At5g51630	chr5:020970069	0.0	W/20970069-20970532,20970623-20971712,20971830-20972138,20972298-20972777,20973064-20974267,20974412-20974534,20974647-20974666	AT5G51630.1  CDS  gene_syn K17N15.18, K17N15_18  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: SNC1 (SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1); nucleotide binding (TAIR:AT4G16890.1); Has 18906 Blast hits to 12734 proteins in 505 species: Archae - 26; Bacteria - 1184; Metazoa - 2142; Fungi - 126; Plants - 14626; Viruses - 0; Other Eukaryotes - 802 (source: NCBI BLink).  protein_id AT5G51630.1p  transcript_id AT5G51630.1  protein_id AT5G51630.1p  transcript_id AT5G51630.1  
At5g51630	chr5:020970261	0.0	W/20970261-20970532,20970623-20971712,20971830-20972138,20972298-20972777,20973064-20974267,20974412-20974530,20974647-20974700	AT5G51630.2  CDS  gene_syn K17N15.18, K17N15_18  go_component endomembrane system|GO:0012505||IEA  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane, endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: SNC1 (SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1); nucleotide binding (TAIR:AT4G16890.1); Has 18860 Blast hits to 12700 proteins in 504 species: Archae - 26; Bacteria - 1178; Metazoa - 2139; Fungi - 128; Plants - 14581; Viruses - 0; Other Eukaryotes - 808 (source: NCBI BLink).  protein_id AT5G51630.2p  transcript_id AT5G51630.2  protein_id AT5G51630.2p  transcript_id AT5G51630.2  
At5g51640	chr5:020976970	0.0	C/20976970-20977378,20976329-20976603,20975401-20976222	AT5G51640.1  CDS  gene_syn K17N15.19, K17N15_19, YLS7  gene YLS7  function Encodes leaf-senescence-related protein.  go_process response to ethylene stimulus|GO:0009723|11230571|IEP  go_process response to abscisic acid stimulus|GO:0009737|11230571|IEP  go_process senescence|GO:0010149|11230571|IEP  go_process leaf senescence|GO:0010150|11230571|IEP  product YLS7  note YLS7; INVOLVED IN: response to ethylene stimulus, leaf senescence, response to abscisic acid stimulus, senescence; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25360.2); Has 702 Blast hits to 689 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 700; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G51640.1p  transcript_id AT5G51640.1  protein_id AT5G51640.1p  transcript_id AT5G51640.1  
At5g51650	chr5:020979208	0.0	C/20979208-20979249,20978443-20978823,20978203-20978400	AT5G51650.1  CDS  gene_syn K17N15.20, K17N15_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 708 Blast hits to 267 proteins in 49 species: Archae - 0; Bacteria - 7; Metazoa - 333; Fungi - 36; Plants - 172; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).  protein_id AT5G51650.1p  transcript_id AT5G51650.1  protein_id AT5G51650.1p  transcript_id AT5G51650.1  
At5g51660	chr5:020980250	0.0	W/20980250-20980581,20980671-20980817,20981150-20981303,20981411-20981546,20981888-20982033,20982358-20982453,20982570-20982622,20982801-20982932,20983041-20983092,20983186-20983305,20983395-20983526,20983838-20983966,20984190-20984267,20984670-20984810,20984895-20984989,20985188-20985384,20985497-20986260,20986399-20986479,20986592-20986657,20986759-20986836,20987326-20987556,20987659-20987790,20987887-20988063,20988202-20988387,20988636-20988994,20989154-20989268	AT5G51660.1  CDS  gene_syn CPSF160, K17N15.21, K17N15_21  gene CPSF160  go_function nucleic acid binding|GO:0003676||IEA  go_component nucleus|GO:0005634|16897494|IDA  go_process mRNA polyadenylation|GO:0006378||ISS  go_process mRNA cleavage|GO:0006379||ISS  product CPSF160; nucleic acid binding  note CPSF160; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: mRNA cleavage, mRNA polyadenylation; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cleavage and polyadenylation specificity factor, A subunit, C-terminal (InterPro:IPR004871); BEST Arabidopsis thaliana protein match is: DDB1B (Damaged DNA Binding Protein 1 B); damaged DNA binding / protein binding (TAIR:AT4G21100.1); Has 1115 Blast hits to 738 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 532; Fungi - 288; Plants - 151; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).  protein_id AT5G51660.1p  transcript_id AT5G51660.1  protein_id AT5G51660.1p  transcript_id AT5G51660.1  
At5g51670	chr5:020993560	0.0	W/20993560-20994020,20994133-20995096	AT5G51670.1  CDS  gene_syn K10D11.2, K10D11_2  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: inflorescence meristem, hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF668 (InterPro:IPR007700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23160.1); Has 153 Blast hits to 132 proteins in 12 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G51670.1p  transcript_id AT5G51670.1  protein_id AT5G51670.1p  transcript_id AT5G51670.1  
At5g51680	chr5:020997591	0.0	W/20997591-20998514,20998648-20998755	AT5G51680.1  CDS  gene_syn MIO24.19, MIO24_19  go_component cell wall|GO:0005618||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis; Has 10407 Blast hits to 6165 proteins in 617 species: Archae - 53; Bacteria - 1593; Metazoa - 3291; Fungi - 958; Plants - 2306; Viruses - 508; Other Eukaryotes - 1698 (source: NCBI BLink).  protein_id AT5G51680.1p  transcript_id AT5G51680.1  protein_id AT5G51680.1p  transcript_id AT5G51680.1  
At5g51690	chr5:021000616	0.0	C/21000616-21000957,21000389-21000523,20999973-21000133,20999015-20999864	AT5G51690.1  CDS  gene_syn ACS12, MIO24.18, MIO24_18  gene ACS12  function Encodes an aminotransferase with broad specificity for aspartate and aromatic amino aids such as tyrosine and phenylalanine. It does not act on branched chain amino acids and does not have ACC synthase activity.  go_process cellular amino acid and derivative metabolic process|GO:0006519|12968022|IGI  go_process ethylene biosynthetic process|GO:0009693||ISS  go_function L-aspartate:2-oxoglutarate aminotransferase activity|GO:0004069|12968022|IGI  go_function aromatic-amino-acid:2-oxoglutarate aminotransferase activity|GO:0008793|12968022|IGI  go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847|12968022|IDA  go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847||ISS  product ACS12; 1-aminocyclopropane-1-carboxylate synthase/ L-aspartate:2-oxoglutarate aminotransferase/ aromatic-amino-acid:2-oxoglutarate aminotransferase  note ACS12; FUNCTIONS IN: L-aspartate:2-oxoglutarate aminotransferase activity, aromatic-amino-acid:2-oxoglutarate aminotransferase activity, 1-aminocyclopropane-1-carboxylate synthase activity; INVOLVED IN: ethylene biosynthetic process, cellular amino acid and derivative metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I and II (InterPro:IPR004839), 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: ACS10 (ACC SYNTHASE 10); 1-aminocyclopropane-1-carboxylate synthase/ L-aspartate:2-oxoglutarate aminotransferase/ aromatic-amino-acid:2-oxoglutarate aminotransferase (TAIR:AT1G62960.1); Has 18431 Blast hits to 18428 proteins in 1652 species: Archae - 475; Bacteria - 10736; Metazoa - 613; Fungi - 464; Plants - 898; Viruses - 0; Other Eukaryotes - 5245 (source: NCBI BLink).  protein_id AT5G51690.1p  transcript_id AT5G51690.1  protein_id AT5G51690.1p  transcript_id AT5G51690.1  
At5g51700	chr5:021003036	0.0	C/21003036-21003143,21002322-21002324,21002140-21002222,21001886-21002040,21001561-21001790,21001373-21001474	AT5G51700.1  CDS  gene_syn ATRAR1, MIO24.17, MIO24_17, PBS2, PPHB SUSCEPTIBLE 2, RAR1, RPR2  gene PBS2  function Encodes a resistance signalling protein with two zinc binding (CHORD) domains that are highly conserved across eukaryotic phyla. Mutant has reduced RPS5 and RPM1 mediated resistance. Potentially involved in transduction of R gene mediated disease resistance. Required for R protein accumulation.  go_component cellular_component|GO:0005575||ND  go_process defense response|GO:0006952|10571178|TAS  go_process defense response to fungus, incompatible interaction|GO:0009817|10224270|IMP  go_process defense response to bacterium|GO:0042742|10224270|IMP  go_process protein stabilization|GO:0050821|15976272|IMP  go_function protein binding|GO:0005515|11847307|IPI  go_function zinc ion binding|GO:0008270|17279625|IDA  product PBS2 (PPHB SUSCEPTIBLE 2); protein binding / zinc ion binding  note PPHB SUSCEPTIBLE 2 (PBS2); FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: defense response to fungus, incompatible interaction, protein stabilization, defense response to bacterium, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CHORD (InterPro:IPR007051); Has 716 Blast hits to 366 proteins in 120 species: Archae - 0; Bacteria - 18; Metazoa - 393; Fungi - 119; Plants - 140; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT5G51700.1p  transcript_id AT5G51700.1  protein_id AT5G51700.1p  transcript_id AT5G51700.1  
At5g51710	chr5:021008379	0.0	C/21008379-21008580,21008231-21008274,21008085-21008152,21007908-21007989,21007757-21007818,21007588-21007663,21007398-21007472,21006908-21006979,21006727-21006810,21006576-21006644,21006394-21006471,21006218-21006306,21006028-21006124,21005869-21005922,21005540-21005635,21005256-21005444,21005081-21005158,21004940-21004984,21004743-21004838,21004566-21004607	AT5G51710.2  CDS  gene_syn ATKEA5, KEA5, MIO24.16, MIO24_16  gene KEA5  function member of Putative potassium proton antiporter family  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812||IEA  go_process potassium ion transport|GO:0006813||ISS  go_function potassium ion transmembrane transporter activity|GO:0015079||ISS  go_function potassium:hydrogen antiporter activity|GO:0015386|11500563|NAS  go_function potassium:hydrogen antiporter activity|GO:0015386||ISS  product KEA5; potassium ion transmembrane transporter/ potassium:hydrogen antiporter  note KEA5; FUNCTIONS IN: potassium:hydrogen antiporter activity, potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport, cation transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: KEA6; potassium ion transmembrane transporter/ potassium:hydrogen antiporter (TAIR:AT5G11800.1); Has 6133 Blast hits to 6128 proteins in 1203 species: Archae - 220; Bacteria - 4648; Metazoa - 61; Fungi - 76; Plants - 169; Viruses - 0; Other Eukaryotes - 959 (source: NCBI BLink).  protein_id AT5G51710.2p  transcript_id AT5G51710.2  protein_id AT5G51710.2p  transcript_id AT5G51710.2  
At5g51710	chr5:021008379	0.0	C/21008379-21008580,21008231-21008274,21008085-21008152,21007908-21007989,21007757-21007818,21007588-21007663,21007398-21007472,21006908-21006979,21006727-21006810,21006576-21006644,21006394-21006471,21006218-21006306,21006028-21006124,21005869-21005922,21005540-21005635,21005256-21005444,21005081-21005158,21004940-21004984,21004743-21004838,21004566-21004616	AT5G51710.1  CDS  gene_syn ATKEA5, KEA5, MIO24.16, MIO24_16  gene KEA5  function member of Putative potassium proton antiporter family  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812||IEA  go_process potassium ion transport|GO:0006813||ISS  go_function potassium ion transmembrane transporter activity|GO:0015079||ISS  go_function potassium:hydrogen antiporter activity|GO:0015386|11500563|NAS  go_function potassium:hydrogen antiporter activity|GO:0015386||ISS  product KEA5; potassium ion transmembrane transporter/ potassium:hydrogen antiporter  note KEA5; FUNCTIONS IN: potassium:hydrogen antiporter activity, potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport, cation transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: KEA6; potassium ion transmembrane transporter/ potassium:hydrogen antiporter (TAIR:AT5G11800.1); Has 6240 Blast hits to 6234 proteins in 1208 species: Archae - 240; Bacteria - 4691; Metazoa - 61; Fungi - 82; Plants - 187; Viruses - 0; Other Eukaryotes - 979 (source: NCBI BLink).  protein_id AT5G51710.1p  transcript_id AT5G51710.1  protein_id AT5G51710.1p  transcript_id AT5G51710.1  
At5g51720	chr5:021009645	0.0	W/21009645-21009868,21010125-21010227	AT5G51720.1  CDS  gene_syn MIO24.14, MIO24_14  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 215 Blast hits to 215 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 183; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT5G51720.1p  transcript_id AT5G51720.1  protein_id AT5G51720.1p  transcript_id AT5G51720.1  
At5g51730	chr5:021011418	0.0	W/21011418-21011460,21011725-21011780,21011869-21012039,21012161-21012241,21012433-21012468,21012542-21012720,21012808-21012957,21013035-21013213,21013314-21013657	AT5G51730.1  CDS  gene_syn MIO24.15, MIO24_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ATRANGAP1 (RAN GTPASE-ACTIVATING PROTEIN 1); nucleic acid binding / nucleotide binding (TAIR:AT3G18610.1); Has 68 Blast hits to 54 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G51730.1p  transcript_id AT5G51730.1  protein_id AT5G51730.1p  transcript_id AT5G51730.1  
At5g51740	chr5:021017110	0.0	W/21017110-21018039,21018184-21018332,21018738-21018987	AT5G51740.1  CDS  gene_syn MIO24.13, MIO24_13  go_component membrane|GO:0016020||IEA  go_process proteolysis|GO:0006508||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_component membrane|GO:0016020||ISS  go_process proteolysis|GO:0006508||ISS  go_function metalloendopeptidase activity|GO:0004222||ISS  product peptidase M48 family protein  note peptidase M48 family protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M48, Ste24p (InterPro:IPR001915); Has 4555 Blast hits to 4524 proteins in 759 species: Archae - 2; Bacteria - 2617; Metazoa - 54; Fungi - 111; Plants - 18; Viruses - 0; Other Eukaryotes - 1753 (source: NCBI BLink).  protein_id AT5G51740.1p  transcript_id AT5G51740.1  protein_id AT5G51740.1p  transcript_id AT5G51740.1  
At5g51750	chr5:021020266	0.0	W/21020266-21022608	AT5G51750.1  CDS  gene_syn ARABIDOPSIS THALIANA SUBTILASE 1.3, ATSBT1.3, MIO24.12, MIO24_12, SBT1.3, SUBTILASE 1.3  gene ATSBT1.3  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_component apoplast|GO:0048046||IDA  go_process proteolysis|GO:0006508||ISS  product ATSBT1.3 (ARABIDOPSIS THALIANA SUBTILASE 1.3); identical protein binding / serine-type endopeptidase  note ARABIDOPSIS THALIANA SUBTILASE 1.3 (ATSBT1.3); FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: apoplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: ARA12; serine-type endopeptidase (TAIR:AT5G67360.1); Has 5303 Blast hits to 4456 proteins in 790 species: Archae - 149; Bacteria - 2915; Metazoa - 122; Fungi - 648; Plants - 896; Viruses - 0; Other Eukaryotes - 573 (source: NCBI BLink).  protein_id AT5G51750.1p  transcript_id AT5G51750.1  protein_id AT5G51750.1p  transcript_id AT5G51750.1  
At5g51760	chr5:021026916	0.0	W/21026916-21027380,21027447-21027791,21027858-21027963,21028578-21028912	AT5G51760.1  CDS  gene_syn ABA-hypersensitive germination 1, AHG1, MIO24.11, MIO24_11  gene AHG1  function Encodes AHG1 (ABA-hypersensitive germination 1), a putative protein phosphatase 2C (PP2C). Expressed in seeds. AHG1 functions in seed development and germination.  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_process response to abscisic acid stimulus|GO:0009737|17461784|IMP  go_process seed germination|GO:0009845|17461784|IEP  go_process seed development|GO:0048316|17461784|IEP  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product AHG1 (ABA-hypersensitive germination 1); catalytic/ protein serine/threonine phosphatase  note ABA-hypersensitive germination 1 (AHG1); FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: seed development, response to abscisic acid stimulus, seed germination; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT2G29380.1); Has 4301 Blast hits to 4287 proteins in 263 species: Archae - 0; Bacteria - 67; Metazoa - 1375; Fungi - 539; Plants - 1330; Viruses - 7; Other Eukaryotes - 983 (source: NCBI BLink).  protein_id AT5G51760.1p  transcript_id AT5G51760.1  protein_id AT5G51760.1p  transcript_id AT5G51760.1  
At5g51770	chr5:021031030	0.0	W/21031030-21032994	AT5G51770.1  CDS  gene_syn MIO24.10, MIO24_10  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G25390.1); Has 60729 Blast hits to 51273 proteins in 2120 species: Archae - 17; Bacteria - 3154; Metazoa - 22343; Fungi - 3393; Plants - 24627; Viruses - 169; Other Eukaryotes - 7026 (source: NCBI BLink).  protein_id AT5G51770.1p  transcript_id AT5G51770.1  protein_id AT5G51770.1p  transcript_id AT5G51770.1  
At5g51780	chr5:021034879	0.0	W/21034879-21034980,21035221-21035577,21036381-21036446	AT5G51780.1  CDS  gene_syn MIO24.9, MIO24_9  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basix helix-loop-helix (bHLH) family protein  note basix helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basix helix-loop-helix (bHLH) family protein (TAIR:AT4G25400.1); Has 144 Blast hits to 143 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G51780.1p  transcript_id AT5G51780.1  protein_id AT5G51780.1p  transcript_id AT5G51780.1  
At5g51790	chr5:021039762	0.0	W/21039762-21039938,21040038-21040406,21040511-21040594	AT5G51790.1  CDS  gene_syn MIO24.8, MIO24_8  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basix helix-loop-helix (bHLH) family protein  note basix helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT4G25410.1); Has 157 Blast hits to 156 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 156; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G51790.1p  transcript_id AT5G51790.1  protein_id AT5G51790.1p  transcript_id AT5G51790.1  
At5g51795	chr5:021043771	0.0	C/21043771-21044194,21043387-21043730,21043083-21043358	AT5G51795.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Kin17 DNA-binding protein-related  note Kin17 DNA-binding protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: Kin17 DNA-binding protein-related (TAIR:AT1G55460.1); Has 458 Blast hits to 439 proteins in 143 species: Archae - 0; Bacteria - 2; Metazoa - 168; Fungi - 103; Plants - 42; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).  protein_id AT5G51795.1p  transcript_id AT5G51795.1  protein_id AT5G51795.1p  transcript_id AT5G51795.1  
At5g51800	chr5:021048317	0.0	W/21048317-21049289,21049535-21049981,21050329-21050388,21050468-21051906	AT5G51800.1  CDS  gene_syn MIO24.6, MIO24_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo; EXPRESSED DURING: D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: gt-2-related (TAIR:AT2G33550.1); Has 429 Blast hits to 424 proteins in 112 species: Archae - 2; Bacteria - 19; Metazoa - 126; Fungi - 57; Plants - 154; Viruses - 14; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT5G51800.1p  transcript_id AT5G51800.1  protein_id AT5G51800.1p  transcript_id AT5G51800.1  
At5g51810	chr5:021056202	0.0	C/21056202-21056746,21055737-21056058,21055389-21055658	AT5G51810.1  CDS  gene_syn AT2353, ATGA20OX2, GA20OX2, GIBBERELLIN 20 OXIDASE 2, MIO24.5, MIO24_5  gene GA20OX2  function Encodes gibberellin 20-oxidase. Involved in gibberellin biosynthesis. Up-regulated by far red light in elongating petioles. Not regulated by a circadian clock.  go_process circadian rhythm|GO:0007623|15923331|IEP  go_process response to red or far red light|GO:0009639|15923331|IEP  go_process gibberellin biosynthetic process|GO:0009686|7630935|IDA  go_process response to gibberellin stimulus|GO:0009739|15927942|IEP  go_process response to gibberellin stimulus|GO:0009739|17933900|IEP  go_process unidimensional cell growth|GO:0009826|18069939|IGI  go_process flower development|GO:0009908|18069939|IGI  go_function gibberellin 20-oxidase activity|GO:0045544|7630935|IDA  product GA20OX2 (GIBBERELLIN 20 OXIDASE 2); gibberellin 20-oxidase  note GIBBERELLIN 20 OXIDASE 2 (GA20OX2); FUNCTIONS IN: gibberellin 20-oxidase activity; INVOLVED IN: in 6 processes; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: GA20OX1; gibberellin 20-oxidase (TAIR:AT4G25420.1); Has 5906 Blast hits to 5885 proteins in 680 species: Archae - 0; Bacteria - 724; Metazoa - 126; Fungi - 635; Plants - 3075; Viruses - 0; Other Eukaryotes - 1346 (source: NCBI BLink).  protein_id AT5G51810.1p  transcript_id AT5G51810.1  protein_id AT5G51810.1p  transcript_id AT5G51810.1  
At5g51812	chr5:021058539	0.0	W/21058539-21058772	AT5G51812.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G51812.1p  transcript_id AT5G51812.1  protein_id AT5G51812.1p  transcript_id AT5G51812.1  
At5g51820	chr5:021067730	0.0	C/21067730-21067933,21067576-21067641,21067447-21067491,21067272-21067364,21067132-21067184,21066891-21066942,21066743-21066811,21066472-21066540,21066227-21066349,21066086-21066138,21065834-21065912,21065683-21065747,21065541-21065608,21065322-21065440,21065160-21065234,21064948-21065063,21064357-21064498,21064186-21064267,21064060-21064106,21063898-21063975,21063683-21063788,21063531-21063598	AT5G51820.1  CDS  gene_syn ARABIDOPSIS THALIANA PHOSPHOGLUCOMUTASE, ATPGMP, MIO24.4, MIO24_4, PGM, PGM1, PHOSPHOGLUCOMUTASE, STARCH-FREE 1, STF1  gene PGM  function Encodes a plastid isoform of the enzyme phosphoglucomutase involved in controlling photosynthetic carbon flow. Effective petiole movement against the direction of the gravity requires functional PGM activity that is required for full development of amyloplasts.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_component chloroplast stroma|GO:0009570|10954083|IDA  go_component stromule|GO:0010319|16923014|IDA  go_process response to cold|GO:0009409|16923014|IEP  go_process detection of gravity|GO:0009590|16344262|IMP  go_process starch biosynthetic process|GO:0019252|10759515|IMP  go_process starch biosynthetic process|GO:0019252|10954083|IMP  go_function phosphoglucomutase activity|GO:0004614|10759515|IDA  go_function phosphoglucomutase activity|GO:0004614|10954083|ISS  product PGM (PHOSPHOGLUCOMUTASE); phosphoglucomutase  note PHOSPHOGLUCOMUTASE (PGM); FUNCTIONS IN: phosphoglucomutase activity; INVOLVED IN: starch biosynthetic process, response to cold, detection of gravity; LOCATED IN: apoplast, stromule, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-D-phosphohexomutase, C-terminal (InterPro:IPR005843), Alpha-D-phosphohexomutase, conserved site (InterPro:IPR016066), Alpha-D-phosphohexomutase, alpha/beta/alpha I, II and III (InterPro:IPR016055), Alpha-D-phosphohexomutase, alpha/beta/alpha domain III (InterPro:IPR005846), Alpha-D-phosphohexomutase, alpha/beta/alpha domain II (InterPro:IPR005845), Alpha-D-phosphohexomutase, N-terminal (InterPro:IPR005841), Alpha-D-phosphohexomutase, alpha/beta/alpha domain I (InterPro:IPR005844); BEST Arabidopsis thaliana protein match is: phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative (TAIR:AT1G23190.1); Has 7551 Blast hits to 7540 proteins in 1580 species: Archae - 143; Bacteria - 5127; Metazoa - 433; Fungi - 138; Plants - 117; Viruses - 0; Other Eukaryotes - 1593 (source: NCBI BLink).  protein_id AT5G51820.1p  transcript_id AT5G51820.1  protein_id AT5G51820.1p  transcript_id AT5G51820.1  
At5g51830	chr5:021069709	0.0	W/21069709-21069730,21070025-21070230,21070318-21070530,21070605-21070802,21070885-21071025,21071113-21071229,21071316-21071450	AT5G51830.1  CDS  gene_syn MIO24.3, MIO24_3  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ribokinase activity|GO:0004747||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product pfkB-type carbohydrate kinase family protein  note pfkB-type carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-type carbohydrate kinase family protein (TAIR:AT1G66430.1); Has 11384 Blast hits to 11382 proteins in 1281 species: Archae - 206; Bacteria - 7182; Metazoa - 115; Fungi - 78; Plants - 275; Viruses - 0; Other Eukaryotes - 3528 (source: NCBI BLink).  protein_id AT5G51830.1p  transcript_id AT5G51830.1  protein_id AT5G51830.1p  transcript_id AT5G51830.1  
At5g51840	chr5:021072143	0.0	W/21072143-21072229,21072320-21072351,21072688-21072785,21072901-21072983,21073387-21073464,21073557-21073655,21073871-21074131	AT5G51840.1  CDS  gene_syn MIO24.2, MIO24_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 631 Blast hits to 531 proteins in 139 species: Archae - 0; Bacteria - 132; Metazoa - 203; Fungi - 61; Plants - 48; Viruses - 2; Other Eukaryotes - 185 (source: NCBI BLink).  protein_id AT5G51840.1p  transcript_id AT5G51840.1  protein_id AT5G51840.1p  transcript_id AT5G51840.1  
At5g51845	chr5:021077143	0.0	W/21077143-21077215,21077354-21077502	AT5G51845.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23212.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G51845.1p  transcript_id AT5G51845.1  protein_id AT5G51845.1p  transcript_id AT5G51845.1  
At5g51850	chr5:021079419	0.0	W/21079419-21079593,21079709-21079776,21079863-21080774,21080861-21081478	AT5G51850.1  CDS  gene_syn MIO24.1, MIO24_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25430.1); Has 310 Blast hits to 304 proteins in 64 species: Archae - 0; Bacteria - 11; Metazoa - 128; Fungi - 25; Plants - 42; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT5G51850.1p  transcript_id AT5G51850.1  protein_id AT5G51850.1p  transcript_id AT5G51850.1  
At5g51860	chr5:021083945	0.0	C/21083945-21084126,21082963-21083047,21082740-21082801,21082530-21082629,21082375-21082416,21082245-21082286,21081844-21081939	AT5G51860.2  CDS  gene_syn MIO24.20, MIO24_20  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product MADS-box protein (AGL72)  note MADS-box protein (AGL72); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: embryo; EXPRESSED DURING: D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGL71 (AGAMOUS-LIKE 71); transcription factor (TAIR:AT5G51870.1); Has 4999 Blast hits to 4995 proteins in 669 species: Archae - 0; Bacteria - 0; Metazoa - 557; Fungi - 212; Plants - 4174; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT5G51860.2p  transcript_id AT5G51860.2  protein_id AT5G51860.2p  transcript_id AT5G51860.2  
At5g51860	chr5:021083945	0.0	C/21083945-21084126,21082963-21083047,21082740-21082801,21082530-21082629,21082375-21082416,21082245-21082286,21081844-21081966	AT5G51860.1  CDS  gene_syn MIO24.20, MIO24_20  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product MADS-box protein (AGL72)  note MADS-box protein (AGL72); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: embryo; EXPRESSED DURING: D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGL71 (AGAMOUS-LIKE 71); transcription factor (TAIR:AT5G51870.1); Has 4912 Blast hits to 4908 proteins in 665 species: Archae - 0; Bacteria - 0; Metazoa - 554; Fungi - 210; Plants - 4094; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT5G51860.1p  transcript_id AT5G51860.1  protein_id AT5G51860.1p  transcript_id AT5G51860.1  
At5g51870	chr5:021087742	0.0	C/21087742-21087923,21086669-21086753,21086484-21086545,21086162-21086351	AT5G51870.2  CDS  gene_syn AGAMOUS-LIKE 71, AGL71, MJM18.2, MJM18_2  gene AGL71  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL71 (AGAMOUS-LIKE 71); transcription factor  note AGAMOUS-LIKE 71 (AGL71); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: leaf whorl, embryo, flower; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: MADS-box protein (AGL72) (TAIR:AT5G51860.2); Has 4893 Blast hits to 4889 proteins in 661 species: Archae - 0; Bacteria - 0; Metazoa - 554; Fungi - 210; Plants - 4077; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT5G51870.2p  transcript_id AT5G51870.2  protein_id AT5G51870.2p  transcript_id AT5G51870.2  
At5g51870	chr5:021087742	0.0	C/21087742-21087923,21086669-21086753,21086484-21086545,21086252-21086351,21086120-21086161,21085945-21086010,21085635-21085721	AT5G51870.1  CDS  gene_syn AGAMOUS-LIKE 71, AGL71, MJM18.2, MJM18_2  gene AGL71  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL71 (AGAMOUS-LIKE 71); transcription factor  note AGAMOUS-LIKE 71 (AGL71); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: leaf whorl, embryo, flower; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: MADS-box protein (AGL72) (TAIR:AT5G51860.2); Has 5070 Blast hits to 5065 proteins in 682 species: Archae - 2; Bacteria - 4; Metazoa - 555; Fungi - 210; Plants - 4243; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT5G51870.1p  transcript_id AT5G51870.1  protein_id AT5G51870.1p  transcript_id AT5G51870.1  
At5g51880	chr5:021089395	0.0	W/21089395-21089556,21089894-21090141,21090352-21090571,21090653-21090775	AT5G51880.1  CDS  gene_syn MJM18.3, MJM18_3  go_process protein metabolic process|GO:0019538||IEA  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||IEA  go_component cellular_component|GO:0005575||ND  product iron ion binding / oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors  note iron ion binding / oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, iron ion binding; INVOLVED IN: protein metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620); Has 264 Blast hits to 262 proteins in 86 species: Archae - 0; Bacteria - 49; Metazoa - 4; Fungi - 139; Plants - 26; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT5G51880.1p  transcript_id AT5G51880.1  protein_id AT5G51880.1p  transcript_id AT5G51880.1  
At5g51890	chr5:021092123	0.0	C/21092123-21092335,21091845-21092033,21091163-21091729	AT5G51890.1  CDS  gene_syn MJM18.4, MJM18_4  function encodes peroxidase involved in the lignification of tracheary elements (TE) in roots  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601|16446311|TAS  go_function peroxidase activity|GO:0004601||ISS  product peroxidase  note peroxidase; FUNCTIONS IN: peroxidase activity; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase 64 (PER64) (P64) (PRXR4) (TAIR:AT5G42180.1); Has 2936 Blast hits to 2921 proteins in 214 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 91; Plants - 2809; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT5G51890.1p  transcript_id AT5G51890.1  protein_id AT5G51890.1p  transcript_id AT5G51890.1  
At5g51900	chr5:021093993	0.0	C/21093993-21094454,21093681-21093947	AT5G51900.1  CDS  gene_syn MJM18.5, MJM18_5  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product cytochrome P450 family  note cytochrome P450 family; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; EXPRESSED IN: leaf; EXPRESSED DURING: LP.02 two leaves visible; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP96A11; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G39500.1); Has 1529 Blast hits to 1408 proteins in 212 species: Archae - 8; Bacteria - 225; Metazoa - 106; Fungi - 386; Plants - 753; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT5G51900.1p  transcript_id AT5G51900.1  protein_id AT5G51900.1p  transcript_id AT5G51900.1  
At5g51910	chr5:021094704	0.0	C/21094704-21095585	AT5G51910.1  CDS  gene_syn MJM18.6, MJM18_6  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product TCP family transcription factor, putative  note TCP family transcription factor, putative; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor, putative (TAIR:AT2G45680.1); Has 547 Blast hits to 546 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 547; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G51910.1p  transcript_id AT5G51910.1  protein_id AT5G51910.1p  transcript_id AT5G51910.1  
At5g51910	chr5:021094704	0.0	C/21094704-21095585	AT5G51910.2  CDS  gene_syn MJM18.6, MJM18_6  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product TCP family transcription factor, putative  note TCP family transcription factor, putative; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor, putative (TAIR:AT2G45680.1); Has 547 Blast hits to 546 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 547; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G51910.2p  transcript_id AT5G51910.2  protein_id AT5G51910.2p  transcript_id AT5G51910.2  
At5g51920	chr5:021097202	0.0	C/21097202-21098914	AT5G51920.1  CDS  gene_syn MJM18.1, MJM18_1  go_component chloroplast|GO:0009507||IEA  go_function catalytic activity|GO:0003824||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_process biological_process|GO:0008150||ND  product catalytic/ pyridoxal phosphate binding  note catalytic/ pyridoxal phosphate binding; FUNCTIONS IN: pyridoxal phosphate binding, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22980.1); Has 610 Blast hits to 583 proteins in 177 species: Archae - 4; Bacteria - 162; Metazoa - 93; Fungi - 80; Plants - 130; Viruses - 0; Other Eukaryotes - 141 (source: NCBI BLink).  protein_id AT5G51920.1p  transcript_id AT5G51920.1  protein_id AT5G51920.1p  transcript_id AT5G51920.1  
At5g51930	chr5:021101123	0.0	W/21101123-21101927,21102543-21102925,21103008-21103568	AT5G51930.1  CDS  gene_syn MSG15.1, MSG15_1  go_component endomembrane system|GO:0012505||IEA  go_process cellular alcohol metabolic process|GO:0006066||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on CH-OH group of donors|GO:0016614||IEA  go_function FAD binding|GO:0050660||IEA  go_function aldehyde-lyase activity|GO:0016832||ISS  product glucose-methanol-choline (GMC) oxidoreductase family protein  note glucose-methanol-choline (GMC) oxidoreductase family protein; FUNCTIONS IN: aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, oxidoreductase activity, FAD binding; INVOLVED IN: cellular alcohol metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), FAD dependent oxidoreductase (InterPro:IPR006076), Glucose-methanol-choline oxidoreductase (InterPro:IPR012132), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867); BEST Arabidopsis thaliana protein match is: glucose-methanol-choline (GMC) oxidoreductase family protein (TAIR:AT5G51950.1); Has 8687 Blast hits to 8367 proteins in 680 species: Archae - 2; Bacteria - 2466; Metazoa - 720; Fungi - 1078; Plants - 126; Viruses - 18; Other Eukaryotes - 4277 (source: NCBI BLink).  protein_id AT5G51930.1p  transcript_id AT5G51930.1  protein_id AT5G51930.1p  transcript_id AT5G51930.1  
At5g51940	chr5:021104679	0.0	W/21104679-21104716,21105039-21105072,21105165-21105337,21105426-21105477,21105573-21105640,21105727-21105796	AT5G51940.1  CDS  gene_syn MSG15.2, MSG15_2, NRPB6A, NRPD6A, NRPE6A  gene NRPB6A  function One of two highly similar proteins that can serve as a non-catalytic subunit of nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB6 and the E. coli RNA polymerase omega subunit. Probably redundant with At2g04630.  go_process transcription, DNA-dependent|GO:0006351||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_component DNA-directed RNA polymerase IV complex|GO:0000418|19110459|IPI  go_component DNA-directed RNA polymerase II, core complex|GO:0005665|19110459|IPI  go_component DNA-directed RNA polymerase V complex|GO:0080137|19110459|IPI  go_process transcription, DNA-dependent|GO:0006351||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product NRPB6A; DNA binding / DNA-directed RNA polymerase  note NRPB6A; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription, DNA-dependent; LOCATED IN: DNA-directed RNA polymerase V complex, DNA-directed RNA polymerase II, core complex, DNA-directed RNA polymerase IV complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase subunit, RPB6/omega (InterPro:IPR012293), RNA polymerase Rpb6 (InterPro:IPR006110), DNA-directed RNA polymerase, 14 to 18 kDa subunit (InterPro:IPR006111); BEST Arabidopsis thaliana protein match is: NRPB6B; DNA binding / DNA-directed RNA polymerase (TAIR:AT2G04630.1); Has 681 Blast hits to 681 proteins in 220 species: Archae - 134; Bacteria - 0; Metazoa - 85; Fungi - 129; Plants - 46; Viruses - 11; Other Eukaryotes - 276 (source: NCBI BLink).  protein_id AT5G51940.1p  transcript_id AT5G51940.1  protein_id AT5G51940.1p  transcript_id AT5G51940.1  
At5g51950	chr5:021107724	0.0	C/21107724-21108348,21106912-21107312,21106244-21106815,21106093-21106156	AT5G51950.2  CDS  gene_syn MSG15.3, MSG15_3  go_component endomembrane system|GO:0012505||IEA  go_function oxidoreductase activity, acting on CH-OH group of donors|GO:0016614||IEA  go_function FAD binding|GO:0050660||IEA  go_process response to salt stress|GO:0009651|11351099|IEP  go_function aldehyde-lyase activity|GO:0016832||ISS  product glucose-methanol-choline (GMC) oxidoreductase family protein  note glucose-methanol-choline (GMC) oxidoreductase family protein; FUNCTIONS IN: aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Glucose-methanol-choline oxidoreductase (InterPro:IPR012132), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867); BEST Arabidopsis thaliana protein match is: glucose-methanol-choline (GMC) oxidoreductase family protein (TAIR:AT3G56060.1); Has 8359 Blast hits to 8133 proteins in 678 species: Archae - 2; Bacteria - 2435; Metazoa - 737; Fungi - 1024; Plants - 129; Viruses - 15; Other Eukaryotes - 4017 (source: NCBI BLink).  protein_id AT5G51950.2p  transcript_id AT5G51950.2  protein_id AT5G51950.2p  transcript_id AT5G51950.2  
At5g51950	chr5:021108478	0.0	C/21108478-21108559,21107724-21108365,21106912-21107312,21106244-21106815,21106093-21106156	AT5G51950.1  CDS  gene_syn MSG15.3, MSG15_3  go_component endomembrane system|GO:0012505||IEA  go_function oxidoreductase activity, acting on CH-OH group of donors|GO:0016614||IEA  go_function FAD binding|GO:0050660||IEA  go_process response to salt stress|GO:0009651|11351099|IEP  go_function aldehyde-lyase activity|GO:0016832||ISS  product glucose-methanol-choline (GMC) oxidoreductase family protein  note glucose-methanol-choline (GMC) oxidoreductase family protein; FUNCTIONS IN: aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Glucose-methanol-choline oxidoreductase (InterPro:IPR012132), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867); BEST Arabidopsis thaliana protein match is: glucose-methanol-choline (GMC) oxidoreductase family protein (TAIR:AT3G56060.1); Has 8371 Blast hits to 8143 proteins in 678 species: Archae - 2; Bacteria - 2433; Metazoa - 731; Fungi - 1020; Plants - 128; Viruses - 15; Other Eukaryotes - 4042 (source: NCBI BLink).  protein_id AT5G51950.1p  transcript_id AT5G51950.1  protein_id AT5G51950.1p  transcript_id AT5G51950.1  
At5g51960	chr5:021110716	0.0	W/21110716-21110913,21111003-21111116	AT5G51960.1  CDS  gene_syn MSG15.4, MSG15_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATP synthase assembly factor FMC1, mitochondrial (InterPro:IPR018471); Has 18 Blast hits to 18 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G51960.1p  transcript_id AT5G51960.1  protein_id AT5G51960.1p  transcript_id AT5G51960.1  
At5g51970	chr5:021111820	0.0	W/21111820-21111937,21112033-21112100,21112199-21112726,21112811-21112998,21113092-21113284	AT5G51970.1  CDS  gene_syn MSG15.7, MSG15_7  function Encodes a putative sorbitol dehydrogenase that can be thiolated in vitro.  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative  note sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, binding, zinc ion binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: oxidoreductase, zinc-binding dehydrogenase family protein (TAIR:AT5G63620.1); Has 25517 Blast hits to 25504 proteins in 1877 species: Archae - 400; Bacteria - 14245; Metazoa - 1289; Fungi - 1847; Plants - 2418; Viruses - 3; Other Eukaryotes - 5315 (source: NCBI BLink).  protein_id AT5G51970.1p  transcript_id AT5G51970.1  protein_id AT5G51970.1p  transcript_id AT5G51970.1  
At5g51970	chr5:021111820	0.0	W/21111820-21111937,21112033-21112100,21112199-21112726,21112811-21112998,21113092-21113284	AT5G51970.2  CDS  gene_syn MSG15.7, MSG15_7  function Encodes a putative sorbitol dehydrogenase that can be thiolated in vitro.  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative  note sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: oxidoreductase, zinc-binding dehydrogenase family protein (TAIR:AT5G63620.1); Has 25517 Blast hits to 25504 proteins in 1877 species: Archae - 400; Bacteria - 14245; Metazoa - 1289; Fungi - 1847; Plants - 2418; Viruses - 3; Other Eukaryotes - 5315 (source: NCBI BLink).  protein_id AT5G51970.2p  transcript_id AT5G51970.2  protein_id AT5G51970.2p  transcript_id AT5G51970.2  
At5g51980	chr5:021115351	0.0	C/21115351-21115902,21114888-21114977,21114667-21114768,21114428-21114574,21114207-21114326,21114069-21114128,21113875-21113972,21113650-21113794	AT5G51980.1  CDS  gene_syn MSG15.6, MSG15_6  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product WD-40 repeat family protein / zfwd2 protein (ZFWD2), putative  note WD-40 repeat family protein / zfwd2 protein (ZFWD2), putative; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: ZFWD1 (zinc finger WD40 repeat protein 1); nucleic acid binding / zinc ion binding (TAIR:AT4G25440.1); Has 21712 Blast hits to 11769 proteins in 426 species: Archae - 32; Bacteria - 3074; Metazoa - 9299; Fungi - 4449; Plants - 1804; Viruses - 0; Other Eukaryotes - 3054 (source: NCBI BLink).  protein_id AT5G51980.1p  transcript_id AT5G51980.1  protein_id AT5G51980.1p  transcript_id AT5G51980.1  
At5g51980	chr5:021115351	0.0	C/21115351-21115902,21114888-21114977,21114667-21114768,21114428-21114574,21114207-21114326,21114069-21114128,21113875-21113972,21113650-21113812	AT5G51980.2  CDS  gene_syn MSG15.6, MSG15_6  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product WD-40 repeat family protein / zfwd2 protein (ZFWD2), putative  note WD-40 repeat family protein / zfwd2 protein (ZFWD2), putative; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: ZFWD1 (zinc finger WD40 repeat protein 1); nucleic acid binding / zinc ion binding (TAIR:AT4G25440.1); Has 21544 Blast hits to 11659 proteins in 423 species: Archae - 30; Bacteria - 3074; Metazoa - 9222; Fungi - 4447; Plants - 1760; Viruses - 0; Other Eukaryotes - 3011 (source: NCBI BLink).  protein_id AT5G51980.2p  transcript_id AT5G51980.2  protein_id AT5G51980.2p  transcript_id AT5G51980.2  
At5g51990	chr5:021117113	0.0	C/21117113-21117787	AT5G51990.1  CDS  gene_syn C- REPEAT-BINDING FACTOR 4, CBF4, DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, DREB1D, MSG15.8, MSG15_8  gene CBF4  function encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF4). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to drought stress and abscisic acid treatment, but not to low temperature.  go_component chloroplast|GO:0009507||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to water deprivation|GO:0009414|12376631|IEP  go_process response to abscisic acid stimulus|GO:0009737|15247382|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12376631|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function transcription activator activity|GO:0016563||ISS  product CBF4 (C- REPEAT-BINDING FACTOR 4); DNA binding / transcription activator/ transcription factor  note C- REPEAT-BINDING FACTOR 4 (CBF4); FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: response to water deprivation, response to abscisic acid stimulus, regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: stem, pedicel, root, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: CBF2 (C-REPEAT/DRE BINDING FACTOR 2); DNA binding / transcription activator/ transcription factor (TAIR:AT4G25470.1); Has 3776 Blast hits to 3702 proteins in 200 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3770; Viruses - 2; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G51990.1p  transcript_id AT5G51990.1  protein_id AT5G51990.1p  transcript_id AT5G51990.1  
At5g52000	chr5:021121102	0.0	C/21121102-21121119,21120918-21121017,21120742-21120824,21120545-21120667,21120290-21120466,21120051-21120214,21119889-21119967,21119662-21119790,21119437-21119564,21119024-21119348	AT5G52000.1  CDS  gene_syn IMPA-8, IMPORTIN ALPHA ISOFORM 8, MSG15.24, MSG15_24  gene IMPA-8  function Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process intracellular protein transport|GO:0006886||ISS  go_function protein transporter activity|GO:0008565||ISS  product IMPA-8 (IMPORTIN ALPHA ISOFORM 8); binding / protein transporter  note IMPORTIN ALPHA ISOFORM 8 (IMPA-8); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: IMPA-1 (IMPORTIN ALPHA ISOFORM 1); binding / protein transporter (TAIR:AT3G06720.2); Has 2361 Blast hits to 1855 proteins in 212 species: Archae - 2; Bacteria - 2; Metazoa - 1152; Fungi - 403; Plants - 365; Viruses - 0; Other Eukaryotes - 437 (source: NCBI BLink).  protein_id AT5G52000.1p  transcript_id AT5G52000.1  protein_id AT5G52000.1p  transcript_id AT5G52000.1  
At5g52010	chr5:021121626	0.0	C/21121626-21122816	AT5G52010.1  CDS  gene_syn MSG15.9, MSG15_9  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT4G12240.1); Has 36 Blast hits to 36 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 31; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G52010.1p  transcript_id AT5G52010.1  protein_id AT5G52010.1p  transcript_id AT5G52010.1  
At5g52020	chr5:021124192	0.0	C/21124192-21124890	AT5G52020.1  CDS  gene_syn MSG15.10, MSG15_10  function encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563||ISS  product AP2 domain-containing protein  note AP2 domain-containing protein; FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: DNA binding / transcription activator/ transcription factor (TAIR:AT1G12630.1); Has 3768 Blast hits to 3652 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3753; Viruses - 2; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT5G52020.1p  transcript_id AT5G52020.1  protein_id AT5G52020.1p  transcript_id AT5G52020.1  
At5g52030	chr5:021128291	0.0	W/21128291-21128712,21128809-21128927,21129016-21129104,21129181-21129255,21129348-21129455,21129550-21129651,21129741-21130034	AT5G52030.2  CDS  gene_syn MSG15.11, MSG15_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product TraB protein-related  note TraB protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pheromone shutdown-related, TraB (InterPro:IPR002816); BEST Arabidopsis thaliana protein match is: TraB family protein (TAIR:AT1G05270.1); Has 463 Blast hits to 461 proteins in 163 species: Archae - 70; Bacteria - 146; Metazoa - 109; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).  protein_id AT5G52030.2p  transcript_id AT5G52030.2  protein_id AT5G52030.2p  transcript_id AT5G52030.2  
At5g52030	chr5:021128819	0.0	W/21128819-21128927,21129016-21129104,21129181-21129255,21129348-21129455,21129550-21129651,21129741-21130034	AT5G52030.1  CDS  gene_syn MSG15.11, MSG15_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product TraB protein-related  note TraB protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pheromone shutdown-related, TraB (InterPro:IPR002816); BEST Arabidopsis thaliana protein match is: TraB family protein (TAIR:AT1G05270.1); Has 400 Blast hits to 398 proteins in 150 species: Archae - 52; Bacteria - 136; Metazoa - 105; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT5G52030.1p  transcript_id AT5G52030.1  protein_id AT5G52030.1p  transcript_id AT5G52030.1  
At5g52040	chr5:021131081	0.0	W/21131081-21131186,21132087-21132199,21132280-21132518,21132610-21133191,21133285-21133318	AT5G52040.2  CDS  gene_syn ARGININE/SERINE-RICH SPLICING FACTOR, ATRSP41, MSG15.12, MSG15_12  gene ATRSP41  function encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component spliceosome|GO:0005681|8989882|ISS  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|8989882|ISS  go_process RNA splicing|GO:0008380|16807317|NAS  go_function RNA binding|GO:0003723||ISS  product ATRSP41; RNA binding / nucleic acid binding / nucleotide binding  note ATRSP41; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: spliceosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: ATRSP35; RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT4G25500.1); Has 16129 Blast hits to 11358 proteins in 498 species: Archae - 6; Bacteria - 626; Metazoa - 10525; Fungi - 1652; Plants - 1572; Viruses - 147; Other Eukaryotes - 1601 (source: NCBI BLink).  protein_id AT5G52040.2p  transcript_id AT5G52040.2  protein_id AT5G52040.2p  transcript_id AT5G52040.2  
At5g52040	chr5:021131081	0.0	W/21131081-21131186,21132087-21132199,21132280-21132518,21132610-21133191,21133288-21133318	AT5G52040.1  CDS  gene_syn ARGININE/SERINE-RICH SPLICING FACTOR, ATRSP41, MSG15.12, MSG15_12  gene ATRSP41  function encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component spliceosome|GO:0005681|8989882|ISS  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|8989882|ISS  go_process RNA splicing|GO:0008380|16807317|NAS  go_function RNA binding|GO:0003723||ISS  product ATRSP41; RNA binding / nucleic acid binding / nucleotide binding  note ATRSP41; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: spliceosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: ATRSP35; RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT4G25500.1); Has 16203 Blast hits to 11356 proteins in 498 species: Archae - 6; Bacteria - 627; Metazoa - 10597; Fungi - 1647; Plants - 1570; Viruses - 146; Other Eukaryotes - 1610 (source: NCBI BLink).  protein_id AT5G52040.1p  transcript_id AT5G52040.1  protein_id AT5G52040.1p  transcript_id AT5G52040.1  
At5g52040	chr5:021131791	0.0	W/21131791-21131815,21132087-21132199,21132280-21132518,21132610-21133191,21133288-21133318	AT5G52040.3  CDS  gene_syn ARGININE/SERINE-RICH SPLICING FACTOR, ATRSP41, MSG15.12, MSG15_12  gene ATRSP41  function encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component spliceosome|GO:0005681|8989882|ISS  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|8989882|ISS  go_process RNA splicing|GO:0008380|16807317|NAS  go_function RNA binding|GO:0003723||ISS  product ATRSP41; RNA binding / nucleic acid binding / nucleotide binding  note ATRSP41; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: spliceosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: ATRSP35; RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT4G25500.3).  protein_id AT5G52040.3p  transcript_id AT5G52040.3  protein_id AT5G52040.3p  transcript_id AT5G52040.3  
At5g52040	chr5:021131881	0.0	W/21131881-21131887,21132087-21132199,21132280-21132518,21132610-21133191,21133285-21133318	AT5G52040.4  CDS  gene_syn ARGININE/SERINE-RICH SPLICING FACTOR, ATRSP41, MSG15.12, MSG15_12  gene ATRSP41  function encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component spliceosome|GO:0005681|8989882|ISS  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|8989882|ISS  go_process RNA splicing|GO:0008380|16807317|NAS  go_function RNA binding|GO:0003723||ISS  product ATRSP41; RNA binding / nucleic acid binding / nucleotide binding  note ATRSP41; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: spliceosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: ATRSP35; RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT4G25500.3).  protein_id AT5G52040.4p  transcript_id AT5G52040.4  protein_id AT5G52040.4p  transcript_id AT5G52040.4  
At5g52050	chr5:021138933	0.0	W/21138933-21140450	AT5G52050.1  CDS  gene_syn MSG15.13, MSG15_13  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  product MATE efflux protein-related  note MATE efflux protein-related; FUNCTIONS IN: drug transporter activity, antiporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux protein-related (TAIR:AT4G23030.1); Has 6036 Blast hits to 5974 proteins in 1099 species: Archae - 127; Bacteria - 3788; Metazoa - 122; Fungi - 208; Plants - 687; Viruses - 0; Other Eukaryotes - 1104 (source: NCBI BLink).  protein_id AT5G52050.1p  transcript_id AT5G52050.1  protein_id AT5G52050.1p  transcript_id AT5G52050.1  
At5g52055	chr5:021147955	0.0	W/21147955-21148865	AT5G52055.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.7e-30 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At5g52060	chr5:021153477	0.0	C/21153477-21153741,21153129-21153385,21152897-21153043,21152449-21152808	AT5G52060.1  CDS  gene_syn ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 1, ATBAG1, MSG15.15, MSG15_15  gene ATBAG1  function A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.  go_process protein modification process|GO:0006464||IEA  go_process apoptosis|GO:0006915||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process apoptosis|GO:0006915||ISS  go_process regulation of apoptosis|GO:0042981||ISS  go_function protein binding|GO:0005515|16636050|IDA  go_function protein binding|GO:0005515||ISS  product ATBAG1 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 1); protein binding  note ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 1 (ATBAG1); FUNCTIONS IN: protein binding; INVOLVED IN: protein modification process, regulation of apoptosis, apoptosis; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Apoptosis regulator Bcl-2 protein, BAG (InterPro:IPR003103), Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: ATBAG3 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 3); protein binding (TAIR:AT5G07220.1); Has 257 Blast hits to 257 proteins in 46 species: Archae - 0; Bacteria - 4; Metazoa - 110; Fungi - 4; Plants - 115; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT5G52060.1p  transcript_id AT5G52060.1  protein_id AT5G52060.1p  transcript_id AT5G52060.1  
At5g52065	chr5:021157312	0.0	C/21157312-21158579	AT5G52065.1  mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G40680.1); similar to putative AP endonuclease/reverse transcriptase [Brassica napus] (GB:AAM82604.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446)  
At5g52067	chr5:021160154	0.0	C/21160154-21160483	AT5G52067.1  pseudogenic_transcript  pseudo  function Pseudogene of AT3G43280  
At5g52070	chr5:021162116	0.0	W/21162116-21162208,21163579-21163648,21163727-21163968,21164080-21164196,21164340-21164382,21164467-21164717	AT5G52070.1  CDS  gene_syn MSG15.17, MSG15_17  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product agenet domain-containing protein  note agenet domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein (TAIR:AT5G42670.1); Has 28 Blast hits to 28 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G52070.1p  transcript_id AT5G52070.1  protein_id AT5G52070.1p  transcript_id AT5G52070.1  
At5g52080	chr5:021167243	0.0	W/21167243-21167350	AT5G52080.1  CDS  gene_syn MSG15.18, MSG15_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G27540.1); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G52080.1p  transcript_id AT5G52080.1  protein_id AT5G52080.1p  transcript_id AT5G52080.1  
At5g52090	chr5:021167432	0.0	C/21167432-21169462	AT5G52090.1  CDS  gene_syn MSG15.19, MSG15_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product tRNA-splicing endonuclease positive effector-related  note tRNA-splicing endonuclease positive effector-related; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G37150.1); Has 3940 Blast hits to 3387 proteins in 542 species: Archae - 119; Bacteria - 752; Metazoa - 1196; Fungi - 786; Plants - 328; Viruses - 37; Other Eukaryotes - 722 (source: NCBI BLink).  protein_id AT5G52090.1p  transcript_id AT5G52090.1  protein_id AT5G52090.1p  transcript_id AT5G52090.1  
At5g52100	chr5:021170203	0.0	W/21170203-21170307,21170396-21170518,21170607-21170681,21170769-21170834,21170921-21171016,21171158-21171274,21171492-21171584,21171676-21171777,21171902-21171988,21172075-21172107	AT5G52100.1  CDS  gene_syn MSG15.20, MSG15_20, chlororespiration reduction 1, crr1  gene crr1  function Is essential for chloroplast NAD(P)H dehydrogenase activity, which is involved in electron transfer between PSII and PSI. Likely functions in biogenesis or stabilization of the NAD(P)H dehydrogenase complex.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|17727612|IDA  go_process lysine biosynthetic process via diaminopimelate|GO:0009089||ISS  go_process photosynthesis, light reaction|GO:0019684|17727612|IMP  go_function dihydrodipicolinate reductase activity|GO:0008839|15652176|IGI  go_function dihydrodipicolinate reductase activity|GO:0008839||ISS  product crr1 (chlororespiration reduction 1); dihydrodipicolinate reductase  note chlororespiration reduction 1 (crr1); FUNCTIONS IN: dihydrodipicolinate reductase activity; INVOLVED IN: photosynthesis, light reaction, lysine biosynthetic process via diaminopimelate; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Dihydrodipicolinate reductase (InterPro:IPR000846), Dihydrodipicolinate reductase, bacterial and plant (InterPro:IPR011770); Has 1661 Blast hits to 1661 proteins in 567 species: Archae - 54; Bacteria - 1169; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 417 (source: NCBI BLink).  protein_id AT5G52100.1p  transcript_id AT5G52100.1  protein_id AT5G52100.1p  transcript_id AT5G52100.1  
At5g52110	chr5:021173794	0.0	C/21173794-21173953,21173592-21173704,21173435-21173506,21173209-21173349,21172976-21173129,21172653-21172840	AT5G52110.1  CDS  gene_syn CCB2, COFACTOR ASSEMBLY OF COMPLEX C, HCF208, HIGH CHLOROPHYLL FLUORESCENCE 208, MSG15.21, MSG15_21  gene HCF208  go_component chloroplast|GO:0009507|18593701|IDA  go_process cytochrome b6f complex assembly|GO:0010190|18593701|IMP  go_function molecular_function|GO:0003674||ND  product HCF208 (HIGH CHLOROPHYLL FLUORESCENCE 208)  note HIGH CHLOROPHYLL FLUORESCENCE 208 (HCF208); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cytochrome b6f complex assembly; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 90 Blast hits to 90 proteins in 39 species: Archae - 0; Bacteria - 57; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G52110.1p  transcript_id AT5G52110.1  protein_id AT5G52110.1p  transcript_id AT5G52110.1  
At5g52110	chr5:021173794	0.0	C/21173794-21173953,21173592-21173704,21173435-21173506,21173209-21173349,21172976-21173129,21172658-21172840,21172159-21172163	AT5G52110.2  CDS  gene_syn CCB2, COFACTOR ASSEMBLY OF COMPLEX C, HCF208, HIGH CHLOROPHYLL FLUORESCENCE 208, MSG15.21, MSG15_21  gene HCF208  go_component chloroplast|GO:0009507|18593701|IDA  go_process cytochrome b6f complex assembly|GO:0010190|18593701|IMP  go_function molecular_function|GO:0003674||ND  product HCF208 (HIGH CHLOROPHYLL FLUORESCENCE 208)  note HIGH CHLOROPHYLL FLUORESCENCE 208 (HCF208); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cytochrome b6f complex assembly; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 90 Blast hits to 90 proteins in 39 species: Archae - 0; Bacteria - 57; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G52110.2p  transcript_id AT5G52110.2  protein_id AT5G52110.2p  transcript_id AT5G52110.2  
At5g52120	chr5:021179811	0.0	C/21179811-21180143,21178748-21178866,21176661-21177084	AT5G52120.1  CDS  gene_syn AtPP2-A14, MSG15.5, MSG15_5, Phloem protein 2-A14  gene AtPP2-A14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function carbohydrate binding|GO:0030246|12529520|ISS  product AtPP2-A14 (Phloem protein 2-A14); carbohydrate binding  note Phloem protein 2-A14 (AtPP2-A14); FUNCTIONS IN: carbohydrate binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: AtPP2-A13 (Arabidopsis thaliana phloem protein 2-A13); carbohydrate binding (TAIR:AT3G61060.1); Has 228 Blast hits to 228 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 228; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G52120.1p  transcript_id AT5G52120.1  protein_id AT5G52120.1p  transcript_id AT5G52120.1  
At5g52130	chr5:021183794	0.0	C/21183794-21183875,21183509-21183547,21183194-21183253,21182764-21182888,21182468-21182653	AT5G52130.1  CDS  gene_syn F17P19.2, F17P19_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G52130.1p  transcript_id AT5G52130.1  protein_id AT5G52130.1p  transcript_id AT5G52130.1  
At5g52140	chr5:021186695	0.0	C/21186695-21186872,21186380-21186445,21186065-21186130,21185881-21185943,21185664-21185701,21185276-21185410,21185011-21185162,21184732-21184840,21184566-21184601	AT5G52140.1  CDS  gene_syn F17P19.3, F17P19_3  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G52150.1); Has 5950 Blast hits to 5934 proteins in 198 species: Archae - 0; Bacteria - 6; Metazoa - 2039; Fungi - 369; Plants - 2510; Viruses - 9; Other Eukaryotes - 1017 (source: NCBI BLink).  protein_id AT5G52140.1p  transcript_id AT5G52140.1  protein_id AT5G52140.1p  transcript_id AT5G52140.1  
At5g52145	chr5:021188602	0.0	W/21188602-21189001	AT5G52145.1  pseudogenic_transcript  pseudo  function Encodes a defensin-like (DEFL) family protein.  
At5g52150	chr5:021191183	0.0	C/21191183-21191303,21190916-21191008,21190644-21190681,21190257-21190492,21189988-21190102	AT5G52150.1  CDS  gene_syn F17P19.5, F17P19_5  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT5G52140.1); Has 3625 Blast hits to 3616 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 1545; Fungi - 209; Plants - 1423; Viruses - 0; Other Eukaryotes - 448 (source: NCBI BLink).  protein_id AT5G52150.1p  transcript_id AT5G52150.1  protein_id AT5G52150.1p  transcript_id AT5G52150.1  
At5g52160	chr5:021195140	0.0	W/21195140-21195430	AT5G52160.1  CDS  gene_syn F17P19.6, F17P19_6  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT5G62080.1); Has 162 Blast hits to 162 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 162; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G52160.1p  transcript_id AT5G52160.1  protein_id AT5G52160.1p  transcript_id AT5G52160.1  
At5g52170	chr5:021196974	0.0	W/21196974-21197194,21197281-21197398,21197478-21197972,21198059-21198160,21198238-21198450,21198878-21199040,21199136-21199491,21199579-21199959	AT5G52170.1  CDS  gene_syn F17P19.7, F17P19_7, HDG7, HOMEODOMAIN GLABROUS 7  gene HDG7  function Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function sequence-specific DNA binding|GO:0043565|16778018|IDA  product HDG7 (HOMEODOMAIN GLABROUS 7); DNA binding / sequence-specific DNA binding / transcription factor  note HOMEODOMAIN GLABROUS 7 (HDG7); FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ANL2 (ANTHOCYANINLESS 2); transcription factor/ transcription regulator (TAIR:AT4G00730.1); Has 10883 Blast hits to 10858 proteins in 526 species: Archae - 0; Bacteria - 0; Metazoa - 8177; Fungi - 123; Plants - 2416; Viruses - 1; Other Eukaryotes - 166 (source: NCBI BLink).  protein_id AT5G52170.1p  transcript_id AT5G52170.1  protein_id AT5G52170.1p  transcript_id AT5G52170.1  
At5g52180	chr5:021200165	0.0	C/21200165-21201541	AT5G52180.1  CDS  gene_syn F17P19.8, F17P19_8  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 50 Blast hits to 50 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 37; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G52180.1p  transcript_id AT5G52180.1  protein_id AT5G52180.1p  transcript_id AT5G52180.1  
At5g52190	chr5:021201817	0.0	C/21201817-21202443	AT5G52190.1  CDS  gene_syn F17P19.9, F17P19_9  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function sugar binding|GO:0005529||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function sugar binding|GO:0005529||ISS  product sugar isomerase (SIS) domain-containing protein  note sugar isomerase (SIS) domain-containing protein; FUNCTIONS IN: sugar binding; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Sugar isomerase (SIS) (InterPro:IPR001347); Has 410 Blast hits to 410 proteins in 146 species: Archae - 96; Bacteria - 262; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT5G52190.1p  transcript_id AT5G52190.1  protein_id AT5G52190.1p  transcript_id AT5G52190.1  
At5g52200	chr5:021204703	0.0	C/21204703-21204719,21203701-21203813,21203164-21203358,21202818-21203068	AT5G52200.1  CDS  gene_syn F17P19.10, F17P19_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 509 Blast hits to 471 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 232; Fungi - 109; Plants - 74; Viruses - 6; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT5G52200.1p  transcript_id AT5G52200.1  protein_id AT5G52200.1p  transcript_id AT5G52200.1  
At5g52210	chr5:021205567	0.0	W/21205567-21205659,21205751-21205891,21206196-21206304,21206379-21206440,21206531-21206634,21206732-21206840	AT5G52210.1  CDS  gene_syn ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1, ATARLB1, ATGB1, F17P19.11, F17P19_11, GTP-BINDING PROTEIN ATGB1  gene ATGB1  function A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.  go_component intracellular|GO:0005622||IEA  go_component endomembrane system|GO:0012505||IEA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_function GTP binding|GO:0005525|12644670|ISS  go_function GTP binding|GO:0005525|8843944|IDA  product ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1); GTP binding  note ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1 (ATGB1); FUNCTIONS IN: GTP binding; INVOLVED IN: small GTPase mediated signal transduction; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ATARFA1B (ADP-ribosylation factor A1B); GTP binding / phospholipase activator/ protein binding (TAIR:AT5G14670.1); Has 8038 Blast hits to 8027 proteins in 364 species: Archae - 22; Bacteria - 102; Metazoa - 4168; Fungi - 966; Plants - 1013; Viruses - 0; Other Eukaryotes - 1767 (source: NCBI BLink).  protein_id AT5G52210.1p  transcript_id AT5G52210.1  protein_id AT5G52210.1p  transcript_id AT5G52210.1  
At5g52210	chr5:021205567	0.0	W/21205567-21205659,21205751-21205891,21206196-21206304,21206379-21206440,21206531-21206634,21206732-21206840	AT5G52210.2  CDS  gene_syn ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1, ATARLB1, ATGB1, F17P19.11, F17P19_11, GTP-BINDING PROTEIN ATGB1  gene ATGB1  function A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.  go_component intracellular|GO:0005622||IEA  go_component endomembrane system|GO:0012505||IEA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_function GTP binding|GO:0005525|12644670|ISS  go_function GTP binding|GO:0005525|8843944|IDA  product ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1); GTP binding  note ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1 (ATGB1); FUNCTIONS IN: GTP binding; INVOLVED IN: small GTPase mediated signal transduction; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ATARFA1B (ADP-ribosylation factor A1B); GTP binding / phospholipase activator/ protein binding (TAIR:AT5G14670.1); Has 8038 Blast hits to 8027 proteins in 364 species: Archae - 22; Bacteria - 102; Metazoa - 4168; Fungi - 966; Plants - 1013; Viruses - 0; Other Eukaryotes - 1767 (source: NCBI BLink).  protein_id AT5G52210.2p  transcript_id AT5G52210.2  protein_id AT5G52210.2p  transcript_id AT5G52210.2  
At5g52220	chr5:021207526	0.0	C/21207526-21207678,21207243-21207448,21207097-21207175	AT5G52220.1  CDS  gene_syn F17P19.12, F17P19_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chromosome transmission fidelity protein 8 (InterPro:IPR018607); Has 85 Blast hits to 85 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 54; Fungi - 13; Plants - 11; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G52220.1p  transcript_id AT5G52220.1  protein_id AT5G52220.1p  transcript_id AT5G52220.1  
At5g52230	chr5:021211551	0.0	C/21211551-21211634,21210609-21210707,21210327-21210473,21210090-21210213,21209782-21209982,21208097-21209682	AT5G52230.1  CDS  gene_syn F17P19.13, F17P19_13, MBD13  gene MBD13  function Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.  go_component nucleus|GO:0005634|14617066|IDA  go_process biological_process|GO:0008150||ND  go_function methyl-CpG binding|GO:0008327|12787239|ISS  product MBD13; methyl-CpG binding  note MBD13; FUNCTIONS IN: methyl-CpG binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G22795.1); Has 5744 Blast hits to 4239 proteins in 414 species: Archae - 7; Bacteria - 571; Metazoa - 2545; Fungi - 467; Plants - 192; Viruses - 32; Other Eukaryotes - 1930 (source: NCBI BLink).  protein_id AT5G52230.1p  transcript_id AT5G52230.1  protein_id AT5G52230.1p  transcript_id AT5G52230.1  
At5g52240	chr5:021213121	0.0	W/21213121-21213440,21214215-21214557	AT5G52240.1  CDS  gene_syn ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 5, ATMP1, AtMAPR5, F17P19.14, F17P19_14, MSBP1, membrane steroid binding protein 1  gene MSBP1  function Encodes a protein with similarity to progesterone-binding proteins in animals. Has been shown to bind steroids in vitro. Expressed in aerial portions of the plant excluding mature flowers and siliques. Antisense experiments suggest a role in inhibition of hypocotyl cell elongation. Expression is suppressed light grown seedlings transferred to the dark.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component plasma membrane|GO:0005886|15608331|IDA  go_process negative regulation of cell growth|GO:0030308|15608331|IMP  go_function steroid binding|GO:0005496|15608331|IDA  product MSBP1 (membrane steroid binding protein 1); steroid binding  note membrane steroid binding protein 1 (MSBP1); FUNCTIONS IN: steroid binding; INVOLVED IN: negative regulation of cell growth; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b5, heme-binding site (InterPro:IPR018506), Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: ATMP2; heme binding (TAIR:AT3G48890.1); Has 778 Blast hits to 778 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 379; Fungi - 216; Plants - 120; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT5G52240.1p  transcript_id AT5G52240.1  protein_id AT5G52240.1p  transcript_id AT5G52240.1  
At5g52250	chr5:021216898	0.0	W/21216898-21218055	AT5G52250.1  CDS  gene_syn F17P19.15, F17P19_15  function Encodes a transducin protein whose gene expression is induced by UV-B. This induction is reduced in hy5 mutant and may be a target of HY5 during UV-B response.  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process response to red light|GO:0010114|17076805|IEP  go_process response to far red light|GO:0010218|17076805|IEP  go_process response to UV-B|GO:0010224|14739338|IGI  go_process response to UV-B|GO:0010224|18266923|IEP  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: response to UV-B, response to red light, response to far red light; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: nucleotide binding (TAIR:AT5G23730.1); Has 14260 Blast hits to 9505 proteins in 418 species: Archae - 12; Bacteria - 2478; Metazoa - 5776; Fungi - 2978; Plants - 1139; Viruses - 0; Other Eukaryotes - 1877 (source: NCBI BLink).  protein_id AT5G52250.1p  transcript_id AT5G52250.1  protein_id AT5G52250.1p  transcript_id AT5G52250.1  
At5g52260	chr5:021220165	0.0	W/21220165-21220297,21220427-21220556,21220680-21221223	AT5G52260.1  CDS  gene_syn AtMYB19, F17P19.16, F17P19_16, myb domain protein 19  gene AtMYB19  function Member of the R2R3 factor gene family.  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product AtMYB19 (myb domain protein 19); DNA binding / transcription factor  note myb domain protein 19 (AtMYB19); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: AtMYB18 (myb domain protein 18); DNA binding / transcription factor (TAIR:AT4G25560.1); Has 6329 Blast hits to 5885 proteins in 367 species: Archae - 0; Bacteria - 0; Metazoa - 610; Fungi - 300; Plants - 3764; Viruses - 3; Other Eukaryotes - 1652 (source: NCBI BLink).  protein_id AT5G52260.1p  transcript_id AT5G52260.1  protein_id AT5G52260.1p  transcript_id AT5G52260.1  
At5g52270	chr5:021222407	0.0	C/21222407-21222600,21222020-21222327,21221865-21221921,21221643-21221728	AT5G52270.1  CDS  gene_syn F17P19.17, F17P19_17  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function molecular_function|GO:0003674||ND  product vesicle transport protein-related  note vesicle transport protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SEC22; transporter (TAIR:AT1G11890.1); Has 369 Blast hits to 369 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 185; Fungi - 88; Plants - 49; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT5G52270.1p  transcript_id AT5G52270.1  protein_id AT5G52270.1p  transcript_id AT5G52270.1  
At5g52272	chr5:021223178	0.0	C/21223178-21223844	AT5G52272.1  pseudogenic_transcript  pseudo  function pseudogene of ACYB-2/ACYB-1 (cytochrome b reductase)  
At5g52280	chr5:021226959	0.0	W/21226959-21227030,21227182-21227382,21227471-21227593,21227696-21227733,21227810-21227903,21227988-21229798,21229887-21230109	AT5G52280.1  CDS  gene_syn F17P19.19, F17P19_19  go_component chloroplast|GO:0009507|15028209|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product protein transport protein-related  note protein transport protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63300.1); Has 171231 Blast hits to 80783 proteins in 2246 species: Archae - 1716; Bacteria - 22456; Metazoa - 77919; Fungi - 12001; Plants - 5662; Viruses - 924; Other Eukaryotes - 50553 (source: NCBI BLink).  protein_id AT5G52280.1p  transcript_id AT5G52280.1  protein_id AT5G52280.1p  transcript_id AT5G52280.1  
At5g52290	chr5:021236255	0.0	C/21236255-21236554,21235913-21235993,21235748-21235822,21233720-21235626,21233204-21233408,21232403-21232879,21230489-21232174,21230353-21230406	AT5G52290.1  CDS  gene_syn K24M7.2, K24M7_2, SHOC1, SHORTAGE IN CHIASMATA 1  gene SHOC1  function Encodes a protein with similarity to XPF endonucleases. Loss of function mutations have defects in meiosis- specifically a reduction in the number of chiasmata. As a result both pollen and embryo sacs are abnormal and plants have severely reduced fertility.  go_component cellular_component|GO:0005575||ND  go_process resolution of meiotic joint molecules as recombinants|GO:0000712|18812090|IMP  go_function molecular_function|GO:0003674||ND  product SHOC1 (SHORTAGE IN CHIASMATA 1)  note SHORTAGE IN CHIASMATA 1 (SHOC1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: resolution of meiotic joint molecules as recombinants; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; Has 42 Blast hits to 38 proteins in 16 species: Archae - 0; Bacteria - 9; Metazoa - 7; Fungi - 3; Plants - 17; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G52290.1p  transcript_id AT5G52290.1  protein_id AT5G52290.1p  transcript_id AT5G52290.1  
At5g52300	chr5:021237205	0.0	W/21237205-21237274,21237356-21237526,21237618-21238154,21238225-21239223,21239322-21239404	AT5G52300.1  CDS  gene_syn K24M7.3, K24M7_3, LOW-TEMPERATURE-INDUCED 65, LTI65, RD29B, RESPONSIVE TO DESSICATION 29B  gene LTI65  function encodes a protein that is induced in expression in response to water deprivation such as cold, high-salt, and dessication. The response appears to be via abscisic acid. The promoter region contains two ABA-responsive elements (ABREs) that are required for the dehydration-responsive expression of rd29B as cis-acting elements. Protein is a member of a gene family with other members found plants, animals and fungi.  go_component cellular_component|GO:0005575||ND  go_process response to cold|GO:0009409|8448363|IEP  go_process response to water deprivation|GO:0009414|16463099|IEP  go_process response to water deprivation|GO:0009414|8437577|IEP  go_process response to water deprivation|GO:0009414|8448363|IEP  go_process response to salt stress|GO:0009651|16463099|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463099|IEP  go_process response to abscisic acid stimulus|GO:0009737|8448363|IEP  go_process abscisic acid mediated signaling|GO:0009738|11005831|IEP  go_function molecular_function|GO:0003674||ND  product LTI65 (LOW-TEMPERATURE-INDUCED 65)  note LOW-TEMPERATURE-INDUCED 65 (LTI65); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress, response to water deprivation, abscisic acid mediated signaling, response to cold, response to abscisic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf, seed; EXPRESSED DURING: dry seed stage, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: CAP160 (InterPro:IPR012418); BEST Arabidopsis thaliana protein match is: LTI78 (LOW-TEMPERATURE-INDUCED 78) (TAIR:AT5G52310.1); Has 687 Blast hits to 527 proteins in 117 species: Archae - 0; Bacteria - 12; Metazoa - 358; Fungi - 88; Plants - 116; Viruses - 6; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT5G52300.1p  transcript_id AT5G52300.1  protein_id AT5G52300.1p  transcript_id AT5G52300.1  
At5g52300	chr5:021237205	0.0	W/21237205-21237274,21237359-21237526,21237618-21238154,21238225-21239223,21239322-21239404	AT5G52300.2  CDS  gene_syn K24M7.3, K24M7_3, LOW-TEMPERATURE-INDUCED 65, LTI65, RD29B, RESPONSIVE TO DESSICATION 29B  gene LTI65  function encodes a protein that is induced in expression in response to water deprivation such as cold, high-salt, and dessication. The response appears to be via abscisic acid. The promoter region contains two ABA-responsive elements (ABREs) that are required for the dehydration-responsive expression of rd29B as cis-acting elements. Protein is a member of a gene family with other members found plants, animals and fungi.  go_component cellular_component|GO:0005575||ND  go_process response to cold|GO:0009409|8448363|IEP  go_process response to water deprivation|GO:0009414|16463099|IEP  go_process response to water deprivation|GO:0009414|8437577|IEP  go_process response to water deprivation|GO:0009414|8448363|IEP  go_process response to salt stress|GO:0009651|16463099|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463099|IEP  go_process response to abscisic acid stimulus|GO:0009737|8448363|IEP  go_process abscisic acid mediated signaling|GO:0009738|11005831|IEP  go_function molecular_function|GO:0003674||ND  product LTI65 (LOW-TEMPERATURE-INDUCED 65)  note LOW-TEMPERATURE-INDUCED 65 (LTI65); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress, response to water deprivation, abscisic acid mediated signaling, response to cold, response to abscisic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf, seed; EXPRESSED DURING: dry seed stage, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: CAP160 (InterPro:IPR012418); BEST Arabidopsis thaliana protein match is: LTI78 (LOW-TEMPERATURE-INDUCED 78) (TAIR:AT5G52310.1); Has 636 Blast hits to 515 proteins in 115 species: Archae - 0; Bacteria - 16; Metazoa - 330; Fungi - 84; Plants - 112; Viruses - 6; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT5G52300.2p  transcript_id AT5G52300.2  protein_id AT5G52300.2p  transcript_id AT5G52300.2  
At5g52310	chr5:021240929	0.0	W/21240929-21240977,21241063-21241245,21241342-21241815,21241900-21243326	AT5G52310.1  CDS  gene_syn COLD REGULATED 78, COR78, K24M7.4, K24M7_4, LOW-TEMPERATURE-INDUCED 78, LTI140, LTI78, RD29A, RESPONSIVE TO DESSICATION 29A  gene LTI78  function cold regulated gene, the 5  region of cor78 has cis-acting regulatory elements that can impart cold-regulated gene expression  go_component cellular_component|GO:0005575||ND  go_process response to osmotic stress|GO:0006970|11779861|IGI  go_process response to desiccation|GO:0009269||IMP  go_process response to cold|GO:0009409|16258011|IEP  go_process response to cold|GO:0009409|8448363|IEP  go_process response to water deprivation|GO:0009414|16463099|IEP  go_process response to salt stress|GO:0009651|11351099|IEP  go_process response to salt stress|GO:0009651|16463099|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463099|IEP  go_process response to abscisic acid stimulus|GO:0009737|8479424|IEP  go_process hyperosmotic salinity response|GO:0042538|8148648|IEP  go_function molecular_function|GO:0003674||ND  product LTI78 (LOW-TEMPERATURE-INDUCED 78)  note LOW-TEMPERATURE-INDUCED 78 (LTI78); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 7 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: LTI65 (LOW-TEMPERATURE-INDUCED 65) (TAIR:AT5G52300.2); Has 4537 Blast hits to 2803 proteins in 300 species: Archae - 2; Bacteria - 1332; Metazoa - 1571; Fungi - 359; Plants - 211; Viruses - 43; Other Eukaryotes - 1019 (source: NCBI BLink).  protein_id AT5G52310.1p  transcript_id AT5G52310.1  protein_id AT5G52310.1p  transcript_id AT5G52310.1  
At5g52320	chr5:021245111	0.0	C/21245111-21246619	AT5G52320.1  CDS  gene_syn CYP96A4, K24M7.5, K24M7_5  gene CYP96A4  function member of CYP96A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP96A4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP96A4; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP96A3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G65340.1); Has 20761 Blast hits to 20719 proteins in 1089 species: Archae - 19; Bacteria - 1570; Metazoa - 9520; Fungi - 4063; Plants - 4774; Viruses - 3; Other Eukaryotes - 812 (source: NCBI BLink).  protein_id AT5G52320.1p  transcript_id AT5G52320.1  protein_id AT5G52320.1p  transcript_id AT5G52320.1  
At5g52330	chr5:021249210	0.0	C/21249210-21249288,21249050-21249118,21248847-21248979,21248547-21248702,21248025-21248394,21247814-21247917,21247596-21247725	AT5G52330.2  CDS  gene_syn K24M7.6, K24M7_6  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G04300.1); Has 253 Blast hits to 249 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 39; Plants - 197; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT5G52330.2p  transcript_id AT5G52330.2  protein_id AT5G52330.2p  transcript_id AT5G52330.2  
At5g52330	chr5:021249702	0.0	C/21249702-21249732,21249403-21249514,21249210-21249298,21249050-21249118,21248847-21248979,21248547-21248702,21248025-21248394,21247814-21247917,21247596-21247725	AT5G52330.1  CDS  gene_syn K24M7.6, K24M7_6  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: flower, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G04300.1); Has 650 Blast hits to 619 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 54; Fungi - 103; Plants - 458; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT5G52330.1p  transcript_id AT5G52330.1  protein_id AT5G52330.1p  transcript_id AT5G52330.1  
At5g52340	chr5:021250802	0.0	W/21250802-21250960,21251124-21251219,21251600-21251805,21251915-21252145,21252234-21252372,21252467-21252679,21252755-21252960,21253038-21253235,21253325-21253424,21253501-21253730,21253822-21253939	AT5G52340.1  CDS  gene_syn ATEXO70A2, K24M7.7, K24M7_7, exocyst subunit EXO70 family protein A2  gene ATEXO70A2  function A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.  go_component exocyst|GO:0000145||IEA  go_process exocytosis|GO:0006887||IEA  go_component exocyst|GO:0000145||ISS  go_process vesicle docking during exocytosis|GO:0006904||ISS  go_function protein binding|GO:0005515||ISS  product ATEXO70A2 (exocyst subunit EXO70 family protein A2); protein binding  note exocyst subunit EXO70 family protein A2 (ATEXO70A2); FUNCTIONS IN: protein binding; INVOLVED IN: exocytosis, vesicle docking during exocytosis; LOCATED IN: exocyst; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: ATEXO70A1 (exocyst subunit EXO70 family protein A1); protein binding (TAIR:AT5G03540.1); Has 672 Blast hits to 624 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 166; Fungi - 102; Plants - 387; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT5G52340.1p  transcript_id AT5G52340.1  protein_id AT5G52340.1p  transcript_id AT5G52340.1  
At5g52350	chr5:021254911	0.0	W/21254911-21255233,21255326-21255556,21255672-21255810,21255908-21256120,21256433-21256638,21256716-21256913,21257006-21257105,21257172-21257401,21257498-21257618	AT5G52350.1  CDS  gene_syn ATEXO70A3, K24M7.8, K24M7_8, exocyst subunit EXO70 family protein A3  gene ATEXO70A3  function A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.  go_component exocyst|GO:0000145||IEA  go_process exocytosis|GO:0006887||IEA  go_component exocyst|GO:0000145||ISS  go_process vesicle docking during exocytosis|GO:0006904||ISS  go_function protein binding|GO:0005515||ISS  product ATEXO70A3 (exocyst subunit EXO70 family protein A3); protein binding  note exocyst subunit EXO70 family protein A3 (ATEXO70A3); FUNCTIONS IN: protein binding; INVOLVED IN: exocytosis, vesicle docking during exocytosis; LOCATED IN: exocyst; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: ATEXO70A2 (exocyst subunit EXO70 family protein A2); protein binding (TAIR:AT5G52340.1); Has 588 Blast hits to 586 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 114; Fungi - 82; Plants - 375; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT5G52350.1p  transcript_id AT5G52350.1  protein_id AT5G52350.1p  transcript_id AT5G52350.1  
At5g52355	chr5:021257834	0.0	C/21257834-21257915	AT5G52355.1  tRNA  gene_syn 67839.TRNA-SER-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: TGA)  transcript_id AT5G52355.1  
At5g52360	chr5:021259227	0.0	C/21259227-21259229,21258395-21258654,21258157-21258307	AT5G52360.1  CDS  gene_syn ACTIN DEPOLYMERIZING FACTOR 10, ADF10, K24M7.10, K24M7_10  gene ADF10  go_component intracellular|GO:0005622||IEA  go_function actin binding|GO:0003779||IEA  go_component intracellular|GO:0005622||ISS  go_process biological_process|GO:0008150||ND  product ADF10 (ACTIN DEPOLYMERIZING FACTOR 10); actin binding  note ACTIN DEPOLYMERIZING FACTOR 10 (ADF10); FUNCTIONS IN: actin binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Actin-binding, cofilin/tropomyosin type (InterPro:IPR002108); BEST Arabidopsis thaliana protein match is: ADF7 (actin depolymerizing factor 7); actin binding (TAIR:AT4G25590.1); Has 1075 Blast hits to 1072 proteins in 203 species: Archae - 0; Bacteria - 0; Metazoa - 526; Fungi - 100; Plants - 307; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink).  protein_id AT5G52360.1p  transcript_id AT5G52360.1  protein_id AT5G52360.1p  transcript_id AT5G52360.1  
At5g52370	chr5:021260940	0.0	C/21260940-21261203,21260755-21260797,21260558-21260679	AT5G52370.1  CDS  gene_syn K24M7.11, K24M7_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58990.1); Has 24 Blast hits to 24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 18; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G52370.1p  transcript_id AT5G52370.1  protein_id AT5G52370.1p  transcript_id AT5G52370.1  
At5g52380	chr5:021262765	0.0	C/21262765-21263061,21262404-21262545,21262048-21262139,21261854-21261950,21261521-21261699	AT5G52380.1  CDS  gene_syn K24M7.12, K24M7_12  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc knuckle (CCHC-type) family protein  note zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, CCHC retroviral-type (InterPro:IPR013084); BEST Arabidopsis thaliana protein match is: zinc knuckle (CCHC-type) family protein (TAIR:AT3G43590.1); Has 2838 Blast hits to 1585 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 882; Fungi - 700; Plants - 374; Viruses - 490; Other Eukaryotes - 392 (source: NCBI BLink).  protein_id AT5G52380.1p  transcript_id AT5G52380.1  protein_id AT5G52380.1p  transcript_id AT5G52380.1  
At5g52390	chr5:021265107	0.0	C/21265107-21265173,21264558-21264887,21264281-21264471	AT5G52390.1  CDS  gene_syn K24M7.13, K24M7_13  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product photoassimilate-responsive protein, putative  note photoassimilate-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: PAR1 (InterPro:IPR009489); BEST Arabidopsis thaliana protein match is: photoassimilate-responsive protein-related (TAIR:AT3G54040.1); Has 27 Blast hits to 27 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G52390.1p  transcript_id AT5G52390.1  protein_id AT5G52390.1p  transcript_id AT5G52390.1  
At5g52400	chr5:021272949	0.0	W/21272949-21273252,21273385-21273614,21273900-21274499,21275084-21275509	AT5G52400.1  CDS  gene_syn CYP715A1, K24M7.14, K24M7_14  gene CYP715A1  function member of CYP715A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process response to salt stress|GO:0009651|11351099|IEP  go_function oxygen binding|GO:0019825||ISS  product CYP715A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP715A1; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP735A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT5G38450.1); Has 25035 Blast hits to 24968 proteins in 1335 species: Archae - 23; Bacteria - 3976; Metazoa - 10116; Fungi - 4474; Plants - 4995; Viruses - 3; Other Eukaryotes - 1448 (source: NCBI BLink).  protein_id AT5G52400.1p  transcript_id AT5G52400.1  protein_id AT5G52400.1p  transcript_id AT5G52400.1  
At5g52410	chr5:021275981	0.0	W/21275981-21276230,21276338-21276421,21276502-21276618,21276694-21277022,21277108-21277196,21277286-21277389,21277483-21277573,21277681-21277756,21277845-21277959,21278049-21278580,21278795-21279293	AT5G52410.2  CDS  gene_syn K24M7.15, K24M7_15  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23890.1); Has 29575 Blast hits to 18344 proteins in 1264 species: Archae - 368; Bacteria - 3336; Metazoa - 14847; Fungi - 1875; Plants - 1082; Viruses - 170; Other Eukaryotes - 7897 (source: NCBI BLink).  protein_id AT5G52410.2p  transcript_id AT5G52410.2  protein_id AT5G52410.2p  transcript_id AT5G52410.2  
At5g52410	chr5:021276996	0.0	W/21276996-21277022,21277108-21277196,21277286-21277389,21277483-21277573,21277681-21277756,21277845-21277959,21278049-21278580,21278795-21279293	AT5G52410.1  CDS  gene_syn K24M7.15, K24M7_15  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23890.1); Has 29520 Blast hits to 18263 proteins in 1257 species: Archae - 368; Bacteria - 3323; Metazoa - 14829; Fungi - 1864; Plants - 1076; Viruses - 164; Other Eukaryotes - 7896 (source: NCBI BLink).  protein_id AT5G52410.1p  transcript_id AT5G52410.1  protein_id AT5G52410.1p  transcript_id AT5G52410.1  
At5g52415	chr5:021279904	0.0	W/21279904-21281298	AT5G52415.1  pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At5g52420	chr5:021281817	0.0	W/21281817-21282545	AT5G52420.1  CDS  gene_syn K24M7.17, K24M7_17  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23920.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G52420.1p  transcript_id AT5G52420.1  protein_id AT5G52420.1p  transcript_id AT5G52420.1  
At5g52430	chr5:021284950	0.0	C/21284950-21285045,21283093-21284313	AT5G52430.1  CDS  gene_syn K24M7.18, K24M7_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT4G25620.1); Has 849 Blast hits to 464 proteins in 107 species: Archae - 2; Bacteria - 43; Metazoa - 236; Fungi - 114; Plants - 84; Viruses - 9; Other Eukaryotes - 361 (source: NCBI BLink).  protein_id AT5G52430.1p  transcript_id AT5G52430.1  protein_id AT5G52430.1p  transcript_id AT5G52430.1  
At5g52440	chr5:021286896	0.0	W/21286896-21287109,21287200-21287321,21287674-21287733,21287830-21287998,21288320-21288490,21288567-21288613	AT5G52440.1  CDS  gene_syn HCF106, K24M7.19, K24M7_19  gene HCF106  function HCF106; nuclear gene for chloroplast. Thylakoid membrane delta pH translocation pathway component protein; related to Escherichia coli TatA and TatB  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|10402459|IDA  go_process protein import into chloroplast thylakoid membrane|GO:0045038|10402459|IDA  go_function proton motive force dependent protein transmembrane transporter activity|GO:0009977|10402459|IDA  product HCF106; proton motive force dependent protein transmembrane transporter  note HCF106; FUNCTIONS IN: proton motive force dependent protein transmembrane transporter activity; INVOLVED IN: protein import into chloroplast thylakoid membrane; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial sec-independent translocation protein mttA/Hcf106 (InterPro:IPR003369), Twin-arginine translocation protein TatA/E (InterPro:IPR006312); BEST Arabidopsis thaliana protein match is: thylakoid assembly protein, putative (TAIR:AT5G28750.1); Has 1623 Blast hits to 1564 proteins in 514 species: Archae - 7; Bacteria - 1003; Metazoa - 141; Fungi - 72; Plants - 112; Viruses - 14; Other Eukaryotes - 274 (source: NCBI BLink).  protein_id AT5G52440.1p  transcript_id AT5G52440.1  protein_id AT5G52440.1p  transcript_id AT5G52440.1  
At5g52450	chr5:021291507	0.0	C/21291507-21291749,21290240-21290784,21290065-21290151,21289934-21289990,21289615-21289853,21289391-21289509,21289210-21289296,21289042-21289125	AT5G52450.1  CDS  gene_syn K24M7.20, K24M7_20  go_component plasma membrane|GO:0005886|17151019|IDA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020|11152613|ISS  go_process response to nematode|GO:0009624|16478044|IEP  go_function transporter activity|GO:0005215||ISS  product MATE efflux protein-related  note MATE efflux protein-related; FUNCTIONS IN: antiporter activity, drug transporter activity, transporter activity; INVOLVED IN: response to nematode; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: antiporter/ drug transporter/ transporter (TAIR:AT2G34360.1); Has 6238 Blast hits to 6195 proteins in 1150 species: Archae - 151; Bacteria - 3990; Metazoa - 129; Fungi - 212; Plants - 702; Viruses - 0; Other Eukaryotes - 1054 (source: NCBI BLink).  protein_id AT5G52450.1p  transcript_id AT5G52450.1  protein_id AT5G52450.1p  transcript_id AT5G52450.1  
At5g52460	chr5:021293549	0.0	C/21293549-21293758,21293016-21293456,21292783-21292921,21292375-21292694	AT5G52460.1  CDS  gene_syn EDA41, K24M7.21, K24M7_21, embryo sac development arrest 41  gene EDA41  go_component cellular_component|GO:0005575||ND  go_process polar nucleus fusion|GO:0010197|15634699|IMP  product EDA41 (embryo sac development arrest 41)  note embryo sac development arrest 41 (EDA41); INVOLVED IN: polar nucleus fusion; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, leaf whorl, pedicel, flower, leaf; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44850.1); Has 1154 Blast hits to 1124 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1154; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G52460.1p  transcript_id AT5G52460.1  protein_id AT5G52460.1p  transcript_id AT5G52460.1  
At5g52470	chr5:021294290	0.0	W/21294290-21294308,21294558-21294865,21294948-21295043,21295140-21295217,21295315-21295491,21296163-21296231,21296330-21296509	AT5G52470.1  CDS  gene_syn ATFBR1, ATFIB1, FBR1, FIB1, FIBRILLARIN 1, K24M7.22, K24M7_22, SKIP7, SKP1/ASK1-INTERACTING PROTEIN  gene FIB1  function encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2 -O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.1f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated.  go_component nucleolus|GO:0005730|15496452|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component nucleolus|GO:0005730|10806224|IDA  go_component nucleolus|GO:0005730|10829025|ISS  go_process RNA methylation|GO:0001510|10829025|IGI  go_process rRNA processing|GO:0006364|10829025|IGI  go_function snoRNA binding|GO:0030515|10829025|ISS  product FIB1 (FIBRILLARIN 1); snoRNA binding  note FIBRILLARIN 1 (FIB1); FUNCTIONS IN: snoRNA binding; INVOLVED IN: RNA methylation, rRNA processing; LOCATED IN: nucleolus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fibrillarin (InterPro:IPR000692); BEST Arabidopsis thaliana protein match is: FIB2 (FIBRILLARIN 2); snoRNA binding (TAIR:AT4G25630.1); Has 19291 Blast hits to 7148 proteins in 759 species: Archae - 169; Bacteria - 4454; Metazoa - 6725; Fungi - 1271; Plants - 4288; Viruses - 392; Other Eukaryotes - 1992 (source: NCBI BLink).  protein_id AT5G52470.1p  transcript_id AT5G52470.1  protein_id AT5G52470.1p  transcript_id AT5G52470.1  
At5g52470	chr5:021294290	0.0	W/21294290-21294308,21294558-21294865,21294948-21295043,21295140-21295217,21295315-21295491,21296168-21296231,21296330-21296409	AT5G52470.2  CDS  gene_syn ATFBR1, ATFIB1, FBR1, FIB1, FIBRILLARIN 1, K24M7.22, K24M7_22, SKIP7, SKP1/ASK1-INTERACTING PROTEIN  gene FIB1  function encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2 -O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.1f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated.  go_component membrane|GO:0016020|17432890|IDA  go_component nucleolus|GO:0005730|10806224|IDA  go_component nucleolus|GO:0005730|10829025|ISS  go_process RNA methylation|GO:0001510|10829025|IGI  go_process rRNA processing|GO:0006364|10829025|IGI  go_function snoRNA binding|GO:0030515|10829025|ISS  product FIB1 (FIBRILLARIN 1); snoRNA binding  note FIBRILLARIN 1 (FIB1); FUNCTIONS IN: snoRNA binding; INVOLVED IN: RNA methylation, rRNA processing; LOCATED IN: nucleolus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fibrillarin (InterPro:IPR000692); BEST Arabidopsis thaliana protein match is: FIB2 (FIBRILLARIN 2); snoRNA binding (TAIR:AT4G25630.1); Has 917 Blast hits to 899 proteins in 281 species: Archae - 163; Bacteria - 48; Metazoa - 273; Fungi - 112; Plants - 130; Viruses - 1; Other Eukaryotes - 190 (source: NCBI BLink).  protein_id AT5G52470.2p  transcript_id AT5G52470.2  protein_id AT5G52470.2p  transcript_id AT5G52470.2  
At5g52471	chr5:021295736	0.0	W/21295736-21295809	AT5G52471.1  snoRNA  gene_syn U60.1F  gene U60.1F  function Encodes a novel C/D box snoRNA expressed in seedlings. The snoRNAs are encoded in the fifth intron of FIB1.  go_component box C/D snoRNP complex|GO:0031428||TAS  go_process rRNA methylation|GO:0031167||TAS  go_function molecular_function|GO:0003674||ND  product U60.1F; snoRNA  transcript_id AT5G52471.1  
At5g52480	chr5:021296918	0.0	C/21296918-21297529	AT5G52480.1  CDS  gene_syn K24M7.23, K24M7_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: F-box family protein (FBL20) (TAIR:AT4G05460.1); Has 566 Blast hits to 531 proteins in 61 species: Archae - 0; Bacteria - 6; Metazoa - 200; Fungi - 34; Plants - 283; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT5G52480.1p  transcript_id AT5G52480.1  protein_id AT5G52480.1p  transcript_id AT5G52480.1  
At5g52490	chr5:021298857	0.0	W/21298857-21298875,21299112-21299485,21299568-21299645,21299738-21299983,21300078-21300239	AT5G52490.1  CDS  gene_syn K24M7.24, K24M7_24  go_component nucleus|GO:0005634||IEA  go_process rRNA processing|GO:0006364||IEA  go_function RNA binding|GO:0003723||IEA  go_component nucleus|GO:0005634||ISS  go_process rRNA processing|GO:0006364||ISS  go_function RNA binding|GO:0003723||ISS  product fibrillarin, putative  note fibrillarin, putative; FUNCTIONS IN: RNA binding; INVOLVED IN: rRNA processing; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Fibrillarin (InterPro:IPR000692); BEST Arabidopsis thaliana protein match is: FIB1 (FIBRILLARIN 1); snoRNA binding (TAIR:AT5G52470.1); Has 1311 Blast hits to 1261 proteins in 299 species: Archae - 163; Bacteria - 79; Metazoa - 524; Fungi - 169; Plants - 120; Viruses - 6; Other Eukaryotes - 250 (source: NCBI BLink).  protein_id AT5G52490.1p  transcript_id AT5G52490.1  protein_id AT5G52490.1p  transcript_id AT5G52490.1  
At5g52495	chr5:021300880	0.0	C/21300880-21300963	AT5G52495.1  tRNA  gene_syn 67839.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: CAA)  transcript_id AT5G52495.1  
At5g52500	chr5:021301575	0.0	W/21301575-21302666	AT5G52500.1  CDS  gene_syn K24M7.26, K24M7_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57400.1); Has 23 Blast hits to 23 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G52500.1p  transcript_id AT5G52500.1  protein_id AT5G52500.1p  transcript_id AT5G52500.1  
At5g52510	chr5:021307196	0.0	W/21307196-21309118	AT5G52510.1  CDS  gene_syn T4M5.2, T4M5_2  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product scarecrow-like transcription factor 8 (SCL8)  note scarecrow-like transcription factor 8 (SCL8); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: SCL1 (SCARECROW-LIKE 1); transcription factor (TAIR:AT1G21450.1); Has 1239 Blast hits to 1228 proteins in 191 species: Archae - 0; Bacteria - 4; Metazoa - 13; Fungi - 19; Plants - 1170; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT5G52510.1p  transcript_id AT5G52510.1  protein_id AT5G52510.1p  transcript_id AT5G52510.1  
At5g52520	chr5:021311112	0.0	W/21311112-21311441,21311527-21311583,21311809-21311919,21312027-21312113,21312210-21312323,21312410-21312616,21312797-21312934,21313088-21313249,21313365-21313564,21313650-21313875	AT5G52520.1  CDS  gene_syn OVA6, OVULE ABORTION 6, PROLYL-TRNA SYNTHETASE 1, PRORS1, T4M5.3, T4M5_3  gene OVA6  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function proline-tRNA ligase activity|GO:0004827||IEA  go_function ATP binding|GO:0005524||IEA  go_component mitochondrion|GO:0005739|16251277|IDA  go_component mitochondrion|GO:0005739|16517761|IDA  go_component chloroplast|GO:0009507|16251277|IDA  go_component chloroplast|GO:0009507|16517761|IDA  go_process tRNA aminoacylation for protein translation|GO:0006418||ISS  go_process embryo sac development|GO:0009553|16517761|IMP  go_process regulation of photosynthesis|GO:0010109|16517761|IMP  go_process seed development|GO:0048316|16517761|IMP  go_process ovule development|GO:0048481|16297076|IMP  go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS  go_function ATP binding|GO:0005524||ISS  product OVA6 (OVULE ABORTION 6); ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / proline-tRNA ligase  note OVULE ABORTION 6 (OVA6); FUNCTIONS IN: proline-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: regulation of photosynthesis, seed development, embryo sac development, ovule development, tRNA aminoacylation for protein translation; LOCATED IN: mitochondrion, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (G, H, P and S), conserved region (InterPro:IPR002314), Prolyl-tRNA synthetase, class IIa, prokaryotic-type (InterPro:IPR004499), Prolyl-tRNA synthetase, class II, C-terminal (InterPro:IPR016061), Anticodon-binding (InterPro:IPR004154), Prolyl-tRNA synthetase, class II (InterPro:IPR017449), Prolyl-tRNA synthetase, class IIa, conserved region (InterPro:IPR002316), Aminoacyl-tRNA synthetase, class II, conserved region (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: tRNA synthetase class II (G, H, P and S) family protein (TAIR:AT3G62120.2); Has 9496 Blast hits to 8754 proteins in 1670 species: Archae - 232; Bacteria - 5782; Metazoa - 217; Fungi - 103; Plants - 54; Viruses - 0; Other Eukaryotes - 3108 (source: NCBI BLink).  protein_id AT5G52520.1p  transcript_id AT5G52520.1  protein_id AT5G52520.1p  transcript_id AT5G52520.1  
At5g52530	chr5:021318215	0.0	W/21318215-21318397,21318491-21319806,21319895-21320882	AT5G52530.1  CDS  gene_syn T4M5.4, T4M5_4  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product dentin sialophosphoprotein-related  note dentin sialophosphoprotein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 844 Blast hits to 659 proteins in 152 species: Archae - 4; Bacteria - 71; Metazoa - 376; Fungi - 111; Plants - 49; Viruses - 5; Other Eukaryotes - 228 (source: NCBI BLink).  protein_id AT5G52530.1p  transcript_id AT5G52530.1  protein_id AT5G52530.1p  transcript_id AT5G52530.1  
At5g52530	chr5:021318215	0.0	W/21318215-21318397,21318491-21319806,21319895-21320882	AT5G52530.2  CDS  gene_syn T4M5.4, T4M5_4  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product dentin sialophosphoprotein-related  note dentin sialophosphoprotein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 844 Blast hits to 659 proteins in 152 species: Archae - 4; Bacteria - 71; Metazoa - 376; Fungi - 111; Plants - 49; Viruses - 5; Other Eukaryotes - 228 (source: NCBI BLink).  protein_id AT5G52530.2p  transcript_id AT5G52530.2  protein_id AT5G52530.2p  transcript_id AT5G52530.2  
At5g52540	chr5:021323386	0.0	C/21323386-21323702,21323007-21323233,21322795-21322905,21322514-21322672,21322062-21322309,21321672-21321995	AT5G52540.1  CDS  gene_syn F6N7.1, F6N7_1  go_component chloroplast envelope|GO:0009941|12766230|IDA  product unknown protein  note unknown protein; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF819 (InterPro:IPR008537); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24000.1); Has 519 Blast hits to 519 proteins in 137 species: Archae - 2; Bacteria - 275; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink).  protein_id AT5G52540.1p  transcript_id AT5G52540.1  protein_id AT5G52540.1p  transcript_id AT5G52540.1  
At5g52545	chr5:021323959	0.0	C/21323959-21324198	AT5G52545.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 5 Blast hits to 5 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G52545.1p  transcript_id AT5G52545.1  protein_id AT5G52545.1p  transcript_id AT5G52545.1  
At5g52547	chr5:021326840	0.0	C/21326840-21326842,21326323-21326640	AT5G52547.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 31 Blast hits to 31 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G52547.1p  transcript_id AT5G52547.1  protein_id AT5G52547.1p  transcript_id AT5G52547.1  
At5g52547	chr5:021326840	0.0	C/21326840-21326842,21326323-21326640	AT5G52547.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 31 Blast hits to 31 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G52547.2p  transcript_id AT5G52547.2  protein_id AT5G52547.2p  transcript_id AT5G52547.2  
At5g52550	chr5:021327914	0.0	C/21327914-21328996	AT5G52550.1  CDS  gene_syn F6N7.3, F6N7_3  product unknown protein  note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25670.1); Has 61135 Blast hits to 30897 proteins in 1665 species: Archae - 355; Bacteria - 9502; Metazoa - 27193; Fungi - 4234; Plants - 2075; Viruses - 292; Other Eukaryotes - 17484 (source: NCBI BLink).  protein_id AT5G52550.1p  transcript_id AT5G52550.1  protein_id AT5G52550.1p  transcript_id AT5G52550.1  
At5g52552	chr5:021329119	0.0	C/21329119-21329277	AT5G52552.1  CDS  gene_syn CPuORF14, Conserved peptide upstream open reading frame 14  gene CPuORF14  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF14 represents a conserved upstream opening reading frame relative to major ORF AT5G52550.1  product CPuORF14 (Conserved peptide upstream open reading frame 14)  note Conserved peptide upstream open reading frame 14 (CPuORF14); BEST Arabidopsis thaliana protein match is: CPuORF12 (Conserved peptide upstream open reading frame 12) (TAIR:AT4G25672.1); Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G52552.1p  transcript_id AT5G52552.1  protein_id AT5G52552.1p  transcript_id AT5G52552.1  
At5g52560	chr5:021331230	0.0	W/21331230-21331310,21331412-21331516,21331616-21331732,21331838-21331978,21332079-21332178,21332257-21332384,21332477-21332548,21332629-21332693,21332772-21332832,21332924-21333041,21333138-21333262,21333343-21333419,21333510-21333615,21333688-21333747,21333892-21333972,21334087-21334326,21334406-21334573	AT5G52560.1  CDS  gene_syn ARABIDOPSIS THALIANA UDP-SUGAR PYROPHOSPHORYLASE, ATUSP, F6N7.4, F6N7_4  gene ATUSP  function Encodes a protein with UTP:sugar 1-phosphate uridylyltransferase activity, which has been shown to use a wide range of substrates including glucose-1-P, galactose-1-P, xylose-1-P, arabinose-1-P and glucuronate-1-P. The enzyme was shown to require Mg2+ or Mn2+ for activity.  go_component endomembrane system|GO:0012505||IEA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function UTP:glucose-1-phosphate uridylyltransferase activity|GO:0003983|17341835|IDA  go_function UTP:arabinose-1-phosphate uridylyltransferase activity|GO:0010491|17341835|IDA  go_function UTP:galactose-1-phosphate uridylyltransferase activity|GO:0017103|17341835|IDA  go_function UTP:xylose-1-phosphate uridylyltransferase activity|GO:0047338|17341835|IDA  go_function glucuronate-1-phosphate uridylyltransferase activity|GO:0047350|17341835|IDA  go_function UTP-monosaccharide-1-phosphate uridylyltransferase activity|GO:0051748|15326166|ISS  product ATUSP (ARABIDOPSIS THALIANA UDP-SUGAR PYROPHOSPHORYLASE); UTP-monosaccharide-1-phosphate uridylyltransferase/ UTP:arabinose-1-phosphate uridylyltransferase/ UTP:galactose-1-phosphate uridylyltransferase/ UTP:glucose-1-phosphate uridylyltransferase/ UTP:xylose-1-phosphate uridylyltransferase/ glucuronate-1-phosphate uridylyltransferase  note ARABIDOPSIS THALIANA UDP-SUGAR PYROPHOSPHORYLASE (ATUSP); FUNCTIONS IN: in 6 functions; INVOLVED IN: response to cadmium ion; LOCATED IN: endomembrane system; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: UTP--glucose-1-phosphate uridylyltransferase (InterPro:IPR002618); BEST Arabidopsis thaliana protein match is: UDP-N-acetylglucosamine pyrophosphorylase-related (TAIR:AT1G31070.2); Has 802 Blast hits to 802 proteins in 226 species: Archae - 0; Bacteria - 136; Metazoa - 252; Fungi - 142; Plants - 135; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).  protein_id AT5G52560.1p  transcript_id AT5G52560.1  protein_id AT5G52560.1p  transcript_id AT5G52560.1  
At5g52570	chr5:021336516	0.0	C/21336516-21336887,21336372-21336431,21335299-21335424,21335140-21335196,21334911-21335000	AT5G52570.2  CDS  gene_syn B2, BETA-CAROTENE HYDROXYLASE 2, BETA-OHASE 2, CHY2, F6N7.5, F6N7_5, FERREDOXIN-DEPENDENT DIIRON OXYGENASE  gene BETA-OHASE 2  function Converts & 946;-carotene to zeaxanthin via cryptoxanthin.  go_component endoplasmic reticulum|GO:0005783||IEA  go_component chloroplast|GO:0009507||IEA  go_process carotene metabolic process|GO:0016119|11587509|IGI  go_process carotene metabolic process|GO:0016119|8798688|IGI  go_process xanthophyll biosynthetic process|GO:0016123|16890225|IGI  go_function carotene beta-ring hydroxylase activity|GO:0010291|11587509|IGI  go_function carotene beta-ring hydroxylase activity|GO:0010291|8798688|IGI  go_function carotene beta-ring hydroxylase activity|GO:0010291||ISS  product BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2); carotene beta-ring hydroxylase  note BETA-CAROTENE HYDROXYLASE 2 (BETA-OHASE 2); FUNCTIONS IN: carotene beta-ring hydroxylase activity; INVOLVED IN: xanthophyll biosynthetic process, carotene metabolic process; LOCATED IN: endoplasmic reticulum, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: BETA-OHASE 1 (BETA-HYDROXYLASE 1); carotene beta-ring hydroxylase (TAIR:AT4G25700.1); Has 388 Blast hits to 346 proteins in 100 species: Archae - 0; Bacteria - 104; Metazoa - 0; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).  protein_id AT5G52570.2p  transcript_id AT5G52570.2  protein_id AT5G52570.2p  transcript_id AT5G52570.2  
At5g52570	chr5:021336516	0.0	C/21336516-21336887,21336372-21336431,21335983-21336054,21335755-21335889,21335299-21335424,21335140-21335196,21334911-21335000	AT5G52570.1  CDS  gene_syn B2, BETA-CAROTENE HYDROXYLASE 2, BETA-OHASE 2, CHY2, F6N7.5, F6N7_5, FERREDOXIN-DEPENDENT DIIRON OXYGENASE  gene BETA-OHASE 2  function Converts & 946;-carotene to zeaxanthin via cryptoxanthin.  go_component endoplasmic reticulum|GO:0005783||IEA  go_component chloroplast|GO:0009507||IEA  go_process carotene metabolic process|GO:0016119|11587509|IGI  go_process carotene metabolic process|GO:0016119|8798688|IGI  go_process xanthophyll biosynthetic process|GO:0016123|16890225|IGI  go_function carotene beta-ring hydroxylase activity|GO:0010291|11587509|IGI  go_function carotene beta-ring hydroxylase activity|GO:0010291|8798688|IGI  go_function carotene beta-ring hydroxylase activity|GO:0010291||ISS  product BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2); carotene beta-ring hydroxylase  note BETA-CAROTENE HYDROXYLASE 2 (BETA-OHASE 2); FUNCTIONS IN: carotene beta-ring hydroxylase activity; INVOLVED IN: xanthophyll biosynthetic process, carotene metabolic process; LOCATED IN: endoplasmic reticulum, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: BETA-OHASE 1 (BETA-HYDROXYLASE 1); carotene beta-ring hydroxylase (TAIR:AT4G25700.1); Has 444 Blast hits to 444 proteins in 123 species: Archae - 8; Bacteria - 104; Metazoa - 0; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 184 (source: NCBI BLink).  protein_id AT5G52570.1p  transcript_id AT5G52570.1  protein_id AT5G52570.1p  transcript_id AT5G52570.1  
At5g52580	chr5:021338052	0.0	W/21338052-21338120,21338284-21338457,21338547-21338598,21338688-21338795,21338924-21339008,21339298-21339352,21339445-21339888,21340566-21340625,21340856-21340954,21341048-21341158,21341313-21341384,21341477-21341593,21341794-21341943,21342077-21342177,21342524-21342848	AT5G52580.1  CDS  gene_syn F6N7.6, F6N7_6  go_component intracellular|GO:0005622||IEA  go_process regulation of Rab GTPase activity|GO:0032313||IEA  go_function RAB GTPase activator activity|GO:0005097||IEA  product RAB GTPase activator  note RAB GTPase activator; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: RAB GTPase activator (TAIR:AT4G27100.2); Has 4077 Blast hits to 3776 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 2490; Fungi - 593; Plants - 357; Viruses - 0; Other Eukaryotes - 637 (source: NCBI BLink).  protein_id AT5G52580.1p  transcript_id AT5G52580.1  protein_id AT5G52580.1p  transcript_id AT5G52580.1  
At5g52600	chr5:021343836	0.0	C/21343836-21343968,21343613-21343742,21343197-21343539	AT5G52600.1  CDS  gene_syn AtMYB82, myb domain protein 82  gene AtMYB82  function Member of the R2R3 factor gene family.  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product AtMYB82 (myb domain protein 82); DNA binding / transcription factor  note myb domain protein 82 (AtMYB82); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: ATMYB66 (MYB DOMAIN PROTEIN 66); DNA binding / protein binding / transcription factor/ transcription regulator (TAIR:AT5G14750.1); Has 6256 Blast hits to 5761 proteins in 354 species: Archae - 0; Bacteria - 0; Metazoa - 639; Fungi - 303; Plants - 3766; Viruses - 3; Other Eukaryotes - 1545 (source: NCBI BLink).  protein_id AT5G52600.1p  transcript_id AT5G52600.1  protein_id AT5G52600.1p  transcript_id AT5G52600.1  
At5g52605	chr5:021345540	0.0	C/21345540-21345600,21345216-21345427	AT5G52605.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14276.1); Has 14 Blast hits to 12 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G52605.1p  transcript_id AT5G52605.1  protein_id AT5G52605.1p  transcript_id AT5G52605.1  
At5g52610	chr5:021346423	0.0	C/21346423-21347478	AT5G52610.1  CDS  gene_syn F6N7.10, F6N7_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19160.1); Has 1122 Blast hits to 1101 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G52610.1p  transcript_id AT5G52610.1  protein_id AT5G52610.1p  transcript_id AT5G52610.1  
At5g52620	chr5:021348554	0.0	C/21348554-21349681	AT5G52620.1  CDS  gene_syn F6N7.11, F6N7_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57590.1); Has 423 Blast hits to 396 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 423; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G52620.1p  transcript_id AT5G52620.1  protein_id AT5G52620.1p  transcript_id AT5G52620.1  
At5g52630	chr5:021350375	0.0	W/21350375-21352141	AT5G52630.1  CDS  gene_syn F6N7.12, F6N7_12, MEF1, MITOCHONDRIAL RNA EDITING FACTOR 1  gene MEF1  function Encodes a member of the DYW subfamily of pentatricopeptide repeat (PPR) proteins. Loss of MEF1 function affects RNA editing at specific sites in the mitochondrial genome but do not exhibit obvious phenotypes.  go_component cellular_component|GO:0005575||ND  go_process cytidine to uridine editing|GO:0016554|19252080|IMP  product MEF1 (MITOCHONDRIAL RNA EDITING FACTOR 1)  note MITOCHONDRIAL RNA EDITING FACTOR 1 (MEF1); INVOLVED IN: cytidine to uridine editing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04780.1); Has 13862 Blast hits to 4998 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 43; Plants - 13438; Viruses - 0; Other Eukaryotes - 266 (source: NCBI BLink).  protein_id AT5G52630.1p  transcript_id AT5G52630.1  protein_id AT5G52630.1p  transcript_id AT5G52630.1  
At5g52640	chr5:021352542	0.0	W/21352542-21352679,21352995-21353136,21353222-21353502,21353591-21355147	AT5G52640.1  CDS  gene_syn ATHS83, ATHSP90.1, F6N7.13, F6N7_13, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 90.1, HSP81-1, HSP81.1, HSP83  gene ATHSP90.1  function Encodes a cytosolic heat shock protein AtHSP90.1. AtHSP90.1 interacts with disease resistance signaling components SGT1b and RAR1 and is required for RPS2-mediated resistance.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function ATP binding|GO:0005524||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_process response to heat|GO:0009408||IEP  go_process defense response to bacterium|GO:0042742|14504384|IMP  go_process response to arsenic|GO:0046685||IEP  product ATHSP90.1 (HEAT SHOCK PROTEIN 90.1); ATP binding / unfolded protein binding  note HEAT SHOCK PROTEIN 90.1 (ATHSP90.1); FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: defense response to bacterium, response to heat, response to arsenic; LOCATED IN: cytosol, cell wall, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp90 (InterPro:IPR001404), ATP-binding region, ATPase-like (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: HSP81-2 (HEAT SHOCK PROTEIN 81-2); ATP binding (TAIR:AT5G56030.1); Has 7918 Blast hits to 7631 proteins in 1702 species: Archae - 20; Bacteria - 2178; Metazoa - 1804; Fungi - 323; Plants - 298; Viruses - 1; Other Eukaryotes - 3294 (source: NCBI BLink).  protein_id AT5G52640.1p  transcript_id AT5G52640.1  protein_id AT5G52640.1p  transcript_id AT5G52640.1  
At5g52650	chr5:021357001	0.0	C/21357001-21357003,21356838-21356886,21356360-21356639,21356133-21356265,21355781-21355855	AT5G52650.1  CDS  gene_syn F6N7.14, F6N7_14  go_component cell wall|GO:0005618|16287169|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S10 (RPS10C)  note 40S ribosomal protein S10 (RPS10C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plectin/S10, N-terminal (InterPro:IPR005326); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S10 (RPS10A) (TAIR:AT4G25740.2); Has 1625 Blast hits to 1303 proteins in 253 species: Archae - 0; Bacteria - 122; Metazoa - 640; Fungi - 144; Plants - 159; Viruses - 5; Other Eukaryotes - 555 (source: NCBI BLink).  protein_id AT5G52650.1p  transcript_id AT5G52650.1  protein_id AT5G52650.1p  transcript_id AT5G52650.1  
At5g52660	chr5:021361772	0.0	C/21361772-21362037,21360932-21360989,21360481-21360604,21360220-21360387,21360001-21360105,21359800-21359909,21359620-21359679,21359423-21359524	AT5G52660.1  CDS  gene_syn F6N7.15, F6N7_15  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 8 processes; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT4G01280.1); Has 825 Blast hits to 821 proteins in 86 species: Archae - 0; Bacteria - 4; Metazoa - 80; Fungi - 5; Plants - 646; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT5G52660.1p  transcript_id AT5G52660.1  protein_id AT5G52660.1p  transcript_id AT5G52660.1  
At5g52660	chr5:021361772	0.0	C/21361772-21362037,21360932-21360989,21360481-21360604,21360220-21360387,21360001-21360108,21359800-21359909,21359620-21359679,21359423-21359524	AT5G52660.2  CDS  gene_syn F6N7.15, F6N7_15  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 8 processes; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT4G01280.1); Has 825 Blast hits to 821 proteins in 86 species: Archae - 0; Bacteria - 4; Metazoa - 80; Fungi - 7; Plants - 646; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT5G52660.2p  transcript_id AT5G52660.2  protein_id AT5G52660.2p  transcript_id AT5G52660.2  
At5g52670	chr5:021363728	0.0	W/21363728-21363733,21363831-21363909,21364008-21364234	AT5G52670.1  CDS  gene_syn F6N7.16, F6N7_16  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: metal ion binding (TAIR:AT5G52720.1); Has 117 Blast hits to 113 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G52670.1p  transcript_id AT5G52670.1  protein_id AT5G52670.1p  transcript_id AT5G52670.1  
At5g52680	chr5:021365813	0.0	W/21365813-21365897,21365997-21366190,21366313-21366391,21366505-21366863	AT5G52680.1  CDS  gene_syn F6N7.17, F6N7_17  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT5G52690.1); Has 72 Blast hits to 66 proteins in 24 species: Archae - 0; Bacteria - 30; Metazoa - 4; Fungi - 3; Plants - 19; Viruses - 3; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT5G52680.1p  transcript_id AT5G52680.1  protein_id AT5G52680.1p  transcript_id AT5G52680.1  
At5g52690	chr5:021370499	0.0	W/21370499-21370504,21370635-21370716,21370823-21371016,21371124-21371202,21371327-21371499	AT5G52690.1  CDS  gene_syn F6N7.18, F6N7_18  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT5G52680.1); Has 23 Blast hits to 13 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G52690.1p  transcript_id AT5G52690.1  protein_id AT5G52690.1p  transcript_id AT5G52690.1  
At5g52700	chr5:021372820	0.0	W/21372820-21372880,21372989-21373182,21373338-21374195	AT5G52700.1  CDS  gene_syn F6N7.19, F6N7_19  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT5G52680.1); Has 16 Blast hits to 14 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G52700.1p  transcript_id AT5G52700.1  protein_id AT5G52700.1p  transcript_id AT5G52700.1  
At5g52710	chr5:021375753	0.0	W/21375753-21375785,21375923-21376004,21376102-21376295,21376437-21376515,21376707-21377399,21377567-21377841	AT5G52710.1  CDS  gene_syn F6N7.20, F6N7_20  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT5G52680.1); Has 13923 Blast hits to 2316 proteins in 243 species: Archae - 8; Bacteria - 573; Metazoa - 3708; Fungi - 1086; Plants - 42; Viruses - 20; Other Eukaryotes - 8486 (source: NCBI BLink).  protein_id AT5G52710.1p  transcript_id AT5G52710.1  protein_id AT5G52710.1p  transcript_id AT5G52710.1  
At5g52720	chr5:021378914	0.0	W/21378914-21378919,21379085-21379163,21379293-21379543	AT5G52720.1  CDS  gene_syn F6N7.21, F6N7_21  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product metal ion binding  note metal ion binding; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT5G52670.1); Has 66 Blast hits to 62 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G52720.1p  transcript_id AT5G52720.1  protein_id AT5G52720.1p  transcript_id AT5G52720.1  
At5g52730	chr5:021380174	0.0	W/21380174-21380372,21380507-21380865	AT5G52730.1  CDS  gene_syn F6N7.22, F6N7_22  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT5G52670.1); Has 189 Blast hits to 164 proteins in 31 species: Archae - 0; Bacteria - 18; Metazoa - 9; Fungi - 3; Plants - 107; Viruses - 1; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT5G52730.1p  transcript_id AT5G52730.1  protein_id AT5G52730.1p  transcript_id AT5G52730.1  
At5g52740	chr5:021382530	0.0	W/21382530-21382535,21382685-21382760,21382906-21383180	AT5G52740.1  CDS  gene_syn F6N7.23, F6N7_23  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT5G52760.1); Has 297 Blast hits to 297 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G52740.1p  transcript_id AT5G52740.1  protein_id AT5G52740.1p  transcript_id AT5G52740.1  
At5g52750	chr5:021384134	0.0	W/21384134-21384145,21384294-21384369,21384464-21384795	AT5G52750.1  CDS  gene_syn F6N7.24, F6N7_24  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT5G52760.1); Has 265 Blast hits to 265 proteins in 19 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 260; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G52750.1p  transcript_id AT5G52750.1  protein_id AT5G52750.1p  transcript_id AT5G52750.1  
At5g52760	chr5:021386919	0.0	W/21386919-21386930,21387084-21387159,21387248-21387540	AT5G52760.1  CDS  gene_syn F6N7.25, F6N7_25  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT5G52750.1); Has 192 Blast hits to 192 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 192; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G52760.1p  transcript_id AT5G52760.1  protein_id AT5G52760.1p  transcript_id AT5G52760.1  
At5g52770	chr5:021389766	0.0	W/21389766-21389847,21389936-21390189	AT5G52770.1  CDS  gene_syn F6N7.26, F6N7_26  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  product heavy-metal-associated protein-related  note heavy-metal-associated protein-related; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT5G52750.1); Has 143 Blast hits to 143 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G52770.1p  transcript_id AT5G52770.1  protein_id AT5G52770.1p  transcript_id AT5G52770.1  
At5g52780	chr5:021390943	0.0	C/21390943-21391449	AT5G52780.1  CDS  gene_syn F6N7.27, F6N7_27  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19100.1); Has 123 Blast hits to 123 proteins in 47 species: Archae - 0; Bacteria - 70; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT5G52780.1p  transcript_id AT5G52780.1  protein_id AT5G52780.1p  transcript_id AT5G52780.1  
At5g52790	chr5:021394147	0.0	C/21394147-21394327,21393979-21394055,21393779-21393862,21393580-21393693,21393397-21393483,21393154-21393293,21392979-21393066,21392822-21392895,21392605-21392735,21392348-21392511,21392216-21392262,21391886-21392153,21391740-21391787	AT5G52790.1  CDS  gene_syn F6N7.28, F6N7_28  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product CBS domain-containing protein-related  note CBS domain-containing protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47330.1); Has 6685 Blast hits to 6658 proteins in 1355 species: Archae - 62; Bacteria - 4291; Metazoa - 232; Fungi - 111; Plants - 111; Viruses - 0; Other Eukaryotes - 1878 (source: NCBI BLink).  protein_id AT5G52790.1p  transcript_id AT5G52790.1  protein_id AT5G52790.1p  transcript_id AT5G52790.1  
At5g52797	chr5:021395545	0.0	C/21395545-21395629	AT5G52797.1  miRNA  gene_syn MICRORNA870A, MIR870A  gene MIR870A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UAAUUUGGUGUUUCUUCGAUC  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR870A (MICRORNA870A); miRNA  transcript_id AT5G52797.1  
At5g52800	chr5:021396053	0.0	W/21396053-21396134,21396341-21396501,21396592-21396752,21396835-21396981,21397070-21397121,21397246-21397420,21397665-21397747,21397819-21398025,21398149-21398265,21398392-21398548,21398635-21398742,21398861-21398926,21399011-21399243,21399324-21399419	AT5G52800.3  CDS  gene_syn MXC20.1, MXC20_1  go_process DNA replication|GO:0006260||IEA  go_function DNA primase activity|GO:0003896||IEA  go_component cellular_component|GO:0005575||ND  product DNA primase  note DNA primase; FUNCTIONS IN: DNA primase activity; INVOLVED IN: DNA replication; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DNA primase, UL52/UL70 type, Herpesviridae (InterPro:IPR004340).  protein_id AT5G52800.3p  transcript_id AT5G52800.3  protein_id AT5G52800.3p  transcript_id AT5G52800.3  
At5g52800	chr5:021396053	0.0	W/21396053-21396134,21396341-21396501,21396592-21396752,21396835-21396981,21397070-21397121,21397246-21397420,21397665-21397747,21397819-21398025,21398149-21398265,21398392-21398548,21398635-21398813	AT5G52800.1  CDS  gene_syn MXC20.1, MXC20_1  go_process DNA replication|GO:0006260||IEA  go_function DNA primase activity|GO:0003896||IEA  go_component cellular_component|GO:0005575||ND  product DNA primase  note DNA primase; FUNCTIONS IN: DNA primase activity; INVOLVED IN: DNA replication; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DNA primase, UL52/UL70 type, Herpesviridae (InterPro:IPR004340); Has 125 Blast hits to 108 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 67; Fungi - 0; Plants - 21; Viruses - 4; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT5G52800.1p  transcript_id AT5G52800.1  protein_id AT5G52800.1p  transcript_id AT5G52800.1  
At5g52800	chr5:021396053	0.0	W/21396053-21396134,21396341-21396501,21396592-21396752,21396835-21396981,21397070-21397121,21397246-21397420,21397665-21397747,21397819-21398025,21398149-21398265,21398392-21398559	AT5G52800.2  CDS  gene_syn MXC20.1, MXC20_1  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; Has 115 Blast hits to 105 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 63; Fungi - 0; Plants - 19; Viruses - 4; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT5G52800.2p  transcript_id AT5G52800.2  protein_id AT5G52800.2p  transcript_id AT5G52800.2  
At5g52810	chr5:021399524	0.0	W/21399524-21400501	AT5G52810.1  CDS  gene_syn MXC20.2, MXC20_2  go_component chloroplast|GO:0009507|18431481|IDA  go_process metabolic process|GO:0008152||IEA  go_process nopaline catabolic process|GO:0019468||IEA  go_process octopine catabolic process|GO:0019469||IEA  go_process arginine catabolic process to glutamate|GO:0019544||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function catalytic activity|GO:0003824||ISS  go_function structural constituent of eye lens|GO:0005212||ISS  product ornithine cyclodeaminase/mu-crystallin family protein  note ornithine cyclodeaminase/mu-crystallin family protein; FUNCTIONS IN: structural constituent of eye lens, binding, catalytic activity; INVOLVED IN: arginine catabolic process to glutamate, nopaline catabolic process, metabolic process, octopine catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Ornithine cyclodeaminase/mu-crystallin (InterPro:IPR003462); Has 2172 Blast hits to 2171 proteins in 543 species: Archae - 99; Bacteria - 1420; Metazoa - 108; Fungi - 52; Plants - 17; Viruses - 0; Other Eukaryotes - 476 (source: NCBI BLink).  protein_id AT5G52810.1p  transcript_id AT5G52810.1  protein_id AT5G52810.1p  transcript_id AT5G52810.1  
At5g52815	chr5:021401144	0.0	W/21401144-21401215	AT5G52815.1  tRNA  gene_syn 67841.TRNA-LYS-1, 67842.TRNA-LYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Lys (anticodon: TTT)  transcript_id AT5G52815.1  
At5g52820	chr5:021401423	0.0	W/21401423-21401569,21401692-21401773,21401874-21401963,21402052-21402177,21402261-21402388,21402489-21402688,21402928-21402991,21403229-21403339,21403440-21403574,21403663-21403860,21403970-21404026,21404120-21404203	AT5G52820.1  CDS  gene_syn MXC20.4, MXC20_4  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function nucleotide binding|GO:0000166||ISS  product WD-40 repeat family protein / notchless protein, putative  note WD-40 repeat family protein / notchless protein, putative; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), NLE (InterPro:IPR012972), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), G-protein, beta subunit (InterPro:IPR001632); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G49660.1); Has 92804 Blast hits to 28593 proteins in 717 species: Archae - 60; Bacteria - 7422; Metazoa - 44321; Fungi - 18160; Plants - 9806; Viruses - 6; Other Eukaryotes - 13029 (source: NCBI BLink).  protein_id AT5G52820.1p  transcript_id AT5G52820.1  protein_id AT5G52820.1p  transcript_id AT5G52820.1  
At5g52830	chr5:021410996	0.0	W/21410996-21411435,21411516-21411629,21411726-21412218	AT5G52830.1  CDS  gene_syn AtWRKY27, MXC20.5, MXC20_5, WRKY27  gene WRKY27  function Encodes a WRKY transcription factor WRKY27. Mutation in Arabidopsis WRKY27 results in delayed symptom development in response to the bacterial wilt pathogen Ralstonia solanacearum.  go_component nucleus|GO:0005634|18702671|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process nitric oxide mediated signal transduction|GO:0007263|18702671|IMP  go_process response to gibberellin stimulus|GO:0009739|17933900|IEP  go_process defense response to bacterium|GO:0042742|18702671|IMP  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|18702671|IEP  go_function transcription factor activity|GO:0003700||ISS  product WRKY27; transcription factor  note WRKY27; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to gibberellin stimulus, defense response to bacterium, nitric oxide mediated signal transduction, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY22; transcription factor (TAIR:AT4G01250.1); Has 4914 Blast hits to 3825 proteins in 287 species: Archae - 3; Bacteria - 77; Metazoa - 1406; Fungi - 346; Plants - 2042; Viruses - 100; Other Eukaryotes - 940 (source: NCBI BLink).  protein_id AT5G52830.1p  transcript_id AT5G52830.1  protein_id AT5G52830.1p  transcript_id AT5G52830.1  
At5g52840	chr5:021413718	0.0	W/21413718-21414030,21414598-21414794	AT5G52840.1  CDS  gene_syn MXC20.6, MXC20_6  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function oxidoreductase activity, acting on NADH or NADPH|GO:0016651||IEA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|12837548|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial membrane|GO:0031966|16407270|IDA  go_component respiratory chain complex I|GO:0045271|16407270|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process photorespiration|GO:0009853|16407270|TAS  product NADH-ubiquinone oxidoreductase-related  note NADH-ubiquinone oxidoreductase-related; FUNCTIONS IN: oxidoreductase activity, acting on NADH or NADPH; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, chloroplast, respiratory chain complex I, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ETC complex I subunit (InterPro:IPR006806); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28005.1); Has 272 Blast hits to 272 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 69; Plants - 31; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT5G52840.1p  transcript_id AT5G52840.1  protein_id AT5G52840.1p  transcript_id AT5G52840.1  
At5g52850	chr5:021414935	0.0	C/21414935-21417616	AT5G52850.1  CDS  gene_syn MXC20.7, MXC20_7  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G13650.1); Has 19773 Blast hits to 5259 proteins in 172 species: Archae - 1; Bacteria - 6; Metazoa - 75; Fungi - 89; Plants - 19077; Viruses - 0; Other Eukaryotes - 525 (source: NCBI BLink).  protein_id AT5G52850.1p  transcript_id AT5G52850.1  protein_id AT5G52850.1p  transcript_id AT5G52850.1  
At5g52860	chr5:021419776	0.0	C/21419776-21421545	AT5G52860.1  CDS  gene_syn MXC20.8, MXC20_8  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ABC transporter family protein  note ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 (InterPro:IPR000412), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT4G25750.1); Has 238924 Blast hits to 215779 proteins in 2660 species: Archae - 4288; Bacteria - 163522; Metazoa - 7962; Fungi - 4734; Plants - 2854; Viruses - 9; Other Eukaryotes - 55555 (source: NCBI BLink).  protein_id AT5G52860.1p  transcript_id AT5G52860.1  protein_id AT5G52860.1p  transcript_id AT5G52860.1  
At5g52870	chr5:021428560	0.0	C/21428560-21429367,21428387-21428458,21428191-21428291	AT5G52870.1  CDS  gene_syn MXC20.9, MXC20_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64080.1); Has 1701 Blast hits to 514 proteins in 119 species: Archae - 0; Bacteria - 541; Metazoa - 406; Fungi - 202; Plants - 35; Viruses - 0; Other Eukaryotes - 517 (source: NCBI BLink).  protein_id AT5G52870.1p  transcript_id AT5G52870.1  protein_id AT5G52870.1p  transcript_id AT5G52870.1  
At5g52880	chr5:021433523	0.0	C/21433523-21433695,21432838-21432995,21432677-21432764,21432453-21432583,21432206-21432354,21432002-21432112	AT5G52880.1  CDS  gene_syn MXC20.10, MXC20_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); Has 294 Blast hits to 294 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 246; Fungi - 18; Plants - 20; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G52880.1p  transcript_id AT5G52880.1  protein_id AT5G52880.1p  transcript_id AT5G52880.1  
At5g52882	chr5:021438148	0.0	C/21438148-21438362,21437193-21437403,21437070-21437105,21436889-21436985,21436758-21436800,21436581-21436681,21436414-21436478,21435842-21436335,21434978-21435754,21434753-21434888,21434600-21434668,21434385-21434516,21434155-21434268	AT5G52882.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process biological_process|GO:0008150||ND  product ATP binding / nucleoside-triphosphatase/ nucleotide binding  note ATP binding / nucleoside-triphosphatase/ nucleotide binding; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (TAIR:AT4G28000.1); Has 27413 Blast hits to 25805 proteins in 1860 species: Archae - 929; Bacteria - 10210; Metazoa - 4036; Fungi - 2467; Plants - 1717; Viruses - 25; Other Eukaryotes - 8029 (source: NCBI BLink).  protein_id AT5G52882.1p  transcript_id AT5G52882.1  protein_id AT5G52882.1p  transcript_id AT5G52882.1  
At5g52890	chr5:021445510	0.0	C/21445510-21446197,21445040-21445425	AT5G52890.1  CDS  gene_syn MXC20.12, MXC20_12  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product AT hook motif-containing protein  note AT hook motif-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: AT hook, DNA-binding, conserved site (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT4G21895.1); Has 66 Blast hits to 56 proteins in 20 species: Archae - 0; Bacteria - 4; Metazoa - 23; Fungi - 8; Plants - 19; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT5G52890.1p  transcript_id AT5G52890.1  protein_id AT5G52890.1p  transcript_id AT5G52890.1  
At5g52900	chr5:021452993	0.0	C/21452993-21453692,21452893-21452900	AT5G52900.1  CDS  gene_syn MXC20.13, MXC20_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; Has 10 Blast hits to 10 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G52900.1p  transcript_id AT5G52900.1  protein_id AT5G52900.1p  transcript_id AT5G52900.1  
At5g52901	chr5:021454426	0.0	W/21454426-21454653	AT5G52901.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G52901.1p  transcript_id AT5G52901.1  protein_id AT5G52901.1p  transcript_id AT5G52901.1  
At5g52910	chr5:021462868	0.0	C/21462868-21463159,21462624-21462783,21462235-21462544,21462012-21462152,21461803-21461934,21461526-21461645,21461188-21461403,21460788-21460954,21460489-21460567,21459882-21460376,21459423-21459793,21459190-21459297,21458812-21458985,21458654-21458722,21458356-21458571,21458188-21458274,21457774-21458062	AT5G52910.1  CDS  gene_syn ATIM, MXC20.14, MXC20_14, TIMELESS  gene ATIM  function homolog of Drosophila timeless  go_component nucleus|GO:0005634||NAS  go_process regulation of circadian rhythm|GO:0042752||NAS  product ATIM (TIMELESS)  note TIMELESS (ATIM); INVOLVED IN: regulation of circadian rhythm; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Timeless C-terminal (InterPro:IPR007725), Timeless protein (InterPro:IPR006906); Has 637 Blast hits to 564 proteins in 151 species: Archae - 0; Bacteria - 17; Metazoa - 258; Fungi - 155; Plants - 30; Viruses - 6; Other Eukaryotes - 171 (source: NCBI BLink).  protein_id AT5G52910.1p  transcript_id AT5G52910.1  protein_id AT5G52910.1p  transcript_id AT5G52910.1  
At5g52920	chr5:021463680	0.0	W/21463680-21463922,21464105-21464392,21464479-21464644,21464734-21464868,21464992-21465102,21465201-21465289,21465472-21465534,21465627-21465802,21465900-21466002,21466100-21466248,21466325-21466433,21466505-21466612	AT5G52920.1  CDS  gene_syn MXC20.15, MXC20_15, PKP-BETA1, PKP1, PKP2, PLASTIDIAL PYRUVATE KINASE 1, PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1  gene PKP-BETA1  function encodes a dominant chloroplast pyruvate kinase beta subunit. Important for seed oil biosynthesis. Ubiquitously expressed, with significantly increased expression in maturing seeds. The mutant plant has wrinkled seeds, with a 50-70% reduction in seed fatty acid content.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component mitochondrion|GO:0005739|12953116|IDA  go_component chloroplast|GO:0009507|17892448|IDA  go_component chloroplast stroma|GO:0009570|17557808|IDA  go_process glycolysis|GO:0006096||ISS  go_process fatty acid biosynthetic process|GO:0006633|17892448|IMP  go_process seed development|GO:0048316|17892448|IMP  go_function pyruvate kinase activity|GO:0004743|17557808|IDA  go_function pyruvate kinase activity|GO:0004743||ISS  product PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1); pyruvate kinase  note PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1 (PKP-BETA1); FUNCTIONS IN: pyruvate kinase activity; INVOLVED IN: response to cadmium ion, glycolysis, seed development, fatty acid biosynthetic process; LOCATED IN: mitochondrion, chloroplast, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate kinase, C-terminal-like (InterPro:IPR015795), Pyruvate kinase, active site (InterPro:IPR018209), Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), Pyruvate kinase, alpha/beta (InterPro:IPR015794), Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate kinase (InterPro:IPR001697), Pyruvate kinase, barrel (InterPro:IPR015793); BEST Arabidopsis thaliana protein match is: PKp3 (plastidial pyruvate kinase 3); pyruvate kinase (TAIR:AT1G32440.1); Has 6945 Blast hits to 6892 proteins in 1517 species: Archae - 101; Bacteria - 3229; Metazoa - 482; Fungi - 169; Plants - 281; Viruses - 0; Other Eukaryotes - 2683 (source: NCBI BLink).  protein_id AT5G52920.1p  transcript_id AT5G52920.1  protein_id AT5G52920.1p  transcript_id AT5G52920.1  
At5g52930	chr5:021470370	0.0	W/21470370-21471449	AT5G52930.1  CDS  gene_syn MXC20.16, MXC20_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52940.1); Has 121 Blast hits to 119 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G52930.1p  transcript_id AT5G52930.1  protein_id AT5G52930.1p  transcript_id AT5G52930.1  
At5g52940	chr5:021472301	0.0	W/21472301-21473389	AT5G52940.1  CDS  gene_syn MXC20.17, MXC20_17  go_component mitochondrion|GO:0005739||IEA  product unknown protein  note unknown protein; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52930.1); Has 122 Blast hits to 120 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G52940.1p  transcript_id AT5G52940.1  protein_id AT5G52940.1p  transcript_id AT5G52940.1  
At5g52950	chr5:021474826	0.0	C/21474826-21476939,21474512-21474703,21473887-21474427	AT5G52950.1  CDS  gene_syn MXC20.3, MXC20_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 31 Blast hits to 28 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 2; Plants - 16; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT5G52950.1p  transcript_id AT5G52950.1  protein_id AT5G52950.1p  transcript_id AT5G52950.1  
At5g52960	chr5:021477250	0.0	W/21477250-21477656,21478164-21478269	AT5G52960.1  CDS  gene_syn MNB8.2, MNB8_2  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 181 Blast hits to 181 proteins in 56 species: Archae - 0; Bacteria - 92; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT5G52960.1p  transcript_id AT5G52960.1  protein_id AT5G52960.1p  transcript_id AT5G52960.1  
At5g52965	chr5:021478841	0.0	W/21478841-21479203	AT5G52965.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52975.1); Has 82 Blast hits to 78 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G52965.1p  transcript_id AT5G52965.1  protein_id AT5G52965.1p  transcript_id AT5G52965.1  
At5g52970	chr5:021479620	0.0	W/21479620-21479824,21480121-21480224,21480402-21480492,21480572-21480640,21480720-21480829,21480926-21481018	AT5G52970.1  CDS  gene_syn MNB8.3, MNB8_3  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product thylakoid lumen 15.0 kDa protein  note thylakoid lumen 15.0 kDa protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 228 Blast hits to 228 proteins in 64 species: Archae - 0; Bacteria - 96; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).  protein_id AT5G52970.1p  transcript_id AT5G52970.1  protein_id AT5G52970.1p  transcript_id AT5G52970.1  
At5g52975	chr5:021481514	0.0	W/21481514-21481879	AT5G52975.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52965.1); Has 87 Blast hits to 82 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G52975.1p  transcript_id AT5G52975.1  protein_id AT5G52975.1p  transcript_id AT5G52975.1  
At5g52980	chr5:021483376	0.0	C/21483376-21483642,21482753-21482891,21482580-21482665,21482329-21482505	AT5G52980.1  CDS  gene_syn MNB8.4, MNB8_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 18 Blast hits to 18 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G52980.1p  transcript_id AT5G52980.1  protein_id AT5G52980.1p  transcript_id AT5G52980.1  
At5g52990	chr5:021484188	0.0	W/21484188-21485006	AT5G52990.1  CDS  gene_syn MNB8.5, MNB8_5  go_component endomembrane system|GO:0012505||IEA  go_process transport|GO:0006810||IEA  go_function molecular_function|GO:0003674||ND  product vesicle-associated membrane protein-related  note vesicle-associated membrane protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27840.1); Has 89 Blast hits to 89 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G52990.1p  transcript_id AT5G52990.1  protein_id AT5G52990.1p  transcript_id AT5G52990.1  
At5g53000	chr5:021487774	0.0	C/21487774-21487869,21487508-21487630,21487130-21487216,21486906-21487010,21486638-21486799,21486519-21486554,21486363-21486434,21485990-21486270,21485654-21485909	AT5G53000.1  CDS  gene_syn 2A phosphatase associated protein of 46 kD, MNB8.6, MNB8_6, TAP46  gene TAP46  function PP2A-associated protein with a possible function in the chilling response  go_component cellular_component|GO:0005575||ND  go_process response to heat|GO:0009408|10517853|IEP  go_process response to cold|GO:0009409|10517853|IEP  go_function protein phosphatase type 2A regulator activity|GO:0008601|10517853|ISS  product TAP46 (2A phosphatase associated protein of 46 kD); protein phosphatase type 2A regulator  note 2A phosphatase associated protein of 46 kD (TAP46); FUNCTIONS IN: protein phosphatase type 2A regulator activity; INVOLVED IN: response to cold, response to heat; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: TAP42-like protein (InterPro:IPR007304); Has 333 Blast hits to 318 proteins in 135 species: Archae - 0; Bacteria - 4; Metazoa - 143; Fungi - 96; Plants - 33; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT5G53000.1p  transcript_id AT5G53000.1  protein_id AT5G53000.1p  transcript_id AT5G53000.1  
At5g53010	chr5:021496277	0.0	C/21496277-21496537,21496103-21496195,21495962-21496004,21495719-21495813,21495499-21495630,21495321-21495410,21494983-21495052,21494805-21494875,21494648-21494731,21494492-21494569,21494342-21494416,21493791-21493871,21493632-21493714,21493422-21493578,21493276-21493331,21492999-21493041,21492597-21492734,21492433-21492498,21492251-21492346,21491942-21492058,21491714-21491854,21491532-21491591,21491053-21491208,21490670-21490786,21490446-21490544,21490163-21490300,21489957-21490060,21489707-21489752,21489384-21489512,21489204-21489305,21489038-21489114,21488899-21488950	AT5G53010.1  CDS  gene_syn MNB8.7, MNB8_7  go_component membrane|GO:0016020||IEA  go_process ATP biosynthetic process|GO:0006754||IEA  go_process cation transport|GO:0006812||IEA  go_process calcium ion transport|GO:0006816||IEA  go_process metabolic process|GO:0008152||IEA  go_function calcium-transporting ATPase activity|GO:0005388||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  product calcium-transporting ATPase, putative  note calcium-transporting ATPase, putative; FUNCTIONS IN: calmodulin binding, calcium-transporting ATPase activity; INVOLVED IN: cation transport, calcium ion transport, metabolic process, ATP biosynthetic process; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type, calcium-transporting, PMCA-type (InterPro:IPR006408), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068); BEST Arabidopsis thaliana protein match is: ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8); calcium-transporting ATPase/ calmodulin binding / protein self-association (TAIR:AT5G57110.2); Has 15846 Blast hits to 14797 proteins in 1702 species: Archae - 339; Bacteria - 9715; Metazoa - 2335; Fungi - 1186; Plants - 780; Viruses - 3; Other Eukaryotes - 1488 (source: NCBI BLink).  protein_id AT5G53010.1p  transcript_id AT5G53010.1  protein_id AT5G53010.1p  transcript_id AT5G53010.1  
At5g53020	chr5:021499899	0.0	W/21499899-21500829,21500917-21501767,21501852-21502235	AT5G53020.1  CDS  gene_syn MNB8.8, MNB8_8  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G45900.1); Has 50027 Blast hits to 29202 proteins in 1292 species: Archae - 519; Bacteria - 4159; Metazoa - 27089; Fungi - 3209; Plants - 1476; Viruses - 175; Other Eukaryotes - 13400 (source: NCBI BLink).  protein_id AT5G53020.1p  transcript_id AT5G53020.1  protein_id AT5G53020.1p  transcript_id AT5G53020.1  
At5g53030	chr5:021505319	0.0	W/21505319-21505957,21506231-21506329	AT5G53030.1  CDS  gene_syn MNB8.9, MNB8_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27810.1); Has 27 Blast hits to 27 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G53030.1p  transcript_id AT5G53030.1  protein_id AT5G53030.1p  transcript_id AT5G53030.1  
At5g53030	chr5:021505319	0.0	W/21505319-21505993	AT5G53030.2  CDS  gene_syn MNB8.9, MNB8_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27810.1); Has 27 Blast hits to 27 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G53030.2p  transcript_id AT5G53030.2  protein_id AT5G53030.2p  transcript_id AT5G53030.2  
At5g53040	chr5:021507794	0.0	C/21507794-21507948,21507250-21507703,21506967-21507128	AT5G53040.1  CDS  gene_syn MNB8.10, MNB8_10  go_component endomembrane system|GO:0012505||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product RWP-RK domain-containing protein  note RWP-RK domain-containing protein; FUNCTIONS IN: transcription factor activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: RWP-RK domain-containing protein (TAIR:AT5G66990.1); Has 224 Blast hits to 222 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 212; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT5G53040.1p  transcript_id AT5G53040.1  protein_id AT5G53040.1p  transcript_id AT5G53040.1  
At5g53045	chr5:021509483	0.0	C/21509483-21509538,21509008-21509080,21508850-21508905,21508603-21508708	AT5G53045.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcription factor Pcc1 (InterPro:IPR015419); Has 78 Blast hits to 78 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 33; Fungi - 21; Plants - 19; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G53045.1p  transcript_id AT5G53045.1  protein_id AT5G53045.1p  transcript_id AT5G53045.1  
At5g53048	chr5:021509861	0.0	W/21509861-21511850	AT5G53048.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT5G53050  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G53048.1  
At5g53050	chr5:021513312	0.0	C/21513312-21513432,21513039-21513222,21512828-21512910,21512644-21512744,21512348-21512443,21511913-21511966,21511670-21511818,21511418-21511543,21510901-21510925	AT5G53050.1  CDS  gene_syn MNB8.11, MNB8_11  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: epoxide hydrolase, putative (TAIR:AT4G02340.1); Has 6836 Blast hits to 6836 proteins in 889 species: Archae - 40; Bacteria - 4474; Metazoa - 205; Fungi - 144; Plants - 163; Viruses - 5; Other Eukaryotes - 1805 (source: NCBI BLink).  protein_id AT5G53050.1p  transcript_id AT5G53050.1  protein_id AT5G53050.1p  transcript_id AT5G53050.1  
At5g53050	chr5:021513312	0.0	C/21513312-21513432,21513039-21513222,21512828-21512910,21512644-21512744,21512348-21512443,21511913-21511966,21511670-21511818,21511426-21511543,21510838-21510925,21510534-21510730	AT5G53050.2  CDS  gene_syn MNB8.11, MNB8_11  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: epoxide hydrolase, putative (TAIR:AT4G02340.1); Has 7115 Blast hits to 7115 proteins in 902 species: Archae - 42; Bacteria - 4693; Metazoa - 212; Fungi - 151; Plants - 164; Viruses - 5; Other Eukaryotes - 1848 (source: NCBI BLink).  protein_id AT5G53050.2p  transcript_id AT5G53050.2  protein_id AT5G53050.2p  transcript_id AT5G53050.2  
At5g53050	chr5:021513312	0.0	C/21513312-21513432,21513039-21513222,21512828-21512910,21512644-21512744,21512348-21512443,21511913-21511966,21511670-21511818,21511426-21511543,21510838-21510925,21510534-21510730	AT5G53050.3  CDS  gene_syn MNB8.11, MNB8_11  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: epoxide hydrolase, putative (TAIR:AT4G02340.1); Has 7115 Blast hits to 7115 proteins in 902 species: Archae - 42; Bacteria - 4693; Metazoa - 212; Fungi - 151; Plants - 164; Viruses - 5; Other Eukaryotes - 1848 (source: NCBI BLink).  protein_id AT5G53050.3p  transcript_id AT5G53050.3  protein_id AT5G53050.3p  transcript_id AT5G53050.3  
At5g53060	chr5:021515355	0.0	W/21515355-21516044,21516286-21516729,21516818-21517066,21517153-21517401,21517603-21517673,21517766-21517874,21517971-21518097,21518178-21518197	AT5G53060.1  CDS  gene_syn MNB8.12, MNB8_12  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product KH domain-containing protein  note KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT5G15270.2); Has 2223 Blast hits to 1472 proteins in 133 species: Archae - 0; Bacteria - 2; Metazoa - 1568; Fungi - 154; Plants - 438; Viruses - 2; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT5G53060.1p  transcript_id AT5G53060.1  protein_id AT5G53060.1p  transcript_id AT5G53060.1  
At5g53070	chr5:021518837	0.0	W/21518837-21518986,21519127-21519261,21519605-21519715,21519817-21519921,21520003-21520167	AT5G53070.1  CDS  gene_syn MNB8.13, MNB8_13  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L9 family protein  note ribosomal protein L9 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L9 (InterPro:IPR000244), Ribosomal protein L9 N-terminal-like (InterPro:IPR009027); Has 1336 Blast hits to 1336 proteins in 394 species: Archae - 0; Bacteria - 802; Metazoa - 40; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 452 (source: NCBI BLink).  protein_id AT5G53070.1p  transcript_id AT5G53070.1  protein_id AT5G53070.1p  transcript_id AT5G53070.1  
At5g53080	chr5:021520624	0.0	W/21520624-21520673,21520885-21521085,21521170-21521428,21521516-21521666,21521756-21521978,21522071-21522162,21522252-21522387,21522464-21522795,21522908-21523158	AT5G53080.1  CDS  gene_syn MNB8.14, MNB8_14  go_component chloroplast|GO:0009507||IEA  go_function binding|GO:0005488||IEA  product kinesin light chain-related  note kinesin light chain-related; FUNCTIONS IN: binding; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); Has 7155 Blast hits to 2582 proteins in 248 species: Archae - 85; Bacteria - 1780; Metazoa - 3885; Fungi - 744; Plants - 188; Viruses - 3; Other Eukaryotes - 470 (source: NCBI BLink).  protein_id AT5G53080.1p  transcript_id AT5G53080.1  protein_id AT5G53080.1p  transcript_id AT5G53080.1  
At5g53090	chr5:021523424	0.0	W/21523424-21523644,21523730-21523850,21524035-21524152,21524442-21524578,21524853-21524954,21525048-21525140,21525226-21525561	AT5G53090.1  CDS  gene_syn MFH8.1, MFH8_1  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function oxidoreductase activity|GO:0016491||ISS  product binding / catalytic/ oxidoreductase  note binding / catalytic/ oxidoreductase; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: multicellular organismal development, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: FEY (FOREVER YOUNG); binding / catalytic/ oxidoreductase (TAIR:AT4G27760.1); Has 37058 Blast hits to 37035 proteins in 1719 species: Archae - 246; Bacteria - 21406; Metazoa - 3460; Fungi - 1889; Plants - 870; Viruses - 0; Other Eukaryotes - 9187 (source: NCBI BLink).  protein_id AT5G53090.1p  transcript_id AT5G53090.1  protein_id AT5G53090.1p  transcript_id AT5G53090.1  
At5g53100	chr5:021526250	0.0	W/21526250-21526434,21526553-21526679,21527142-21527259,21527383-21527519,21527606-21527707,21527803-21527895,21527991-21528323	AT5G53100.1  CDS  gene_syn MFH8.2, MFH8_2  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function oxidoreductase activity|GO:0016491||ISS  product oxidoreductase, putative  note oxidoreductase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: multicellular organismal development, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sepal; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: binding / catalytic/ oxidoreductase (TAIR:AT5G53090.1); Has 42095 Blast hits to 42075 proteins in 1763 species: Archae - 253; Bacteria - 25259; Metazoa - 3944; Fungi - 2048; Plants - 961; Viruses - 0; Other Eukaryotes - 9630 (source: NCBI BLink).  protein_id AT5G53100.1p  transcript_id AT5G53100.1  protein_id AT5G53100.1p  transcript_id AT5G53100.1  
At5g53110	chr5:021529022	0.0	W/21529022-21529744	AT5G53110.1  CDS  gene_syn MFH8.3, MFH8_3  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G46495.1); Has 118 Blast hits to 116 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 118; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G53110.1p  transcript_id AT5G53110.1  protein_id AT5G53110.1p  transcript_id AT5G53110.1  
At5g53120	chr5:021535429	0.0	W/21535429-21535618,21535710-21535757,21535942-21536018,21536109-21536231,21536551-21536655,21536744-21536816,21536901-21536972,21537093-21537285,21537369-21537498,21537585-21537653	AT5G53120.1  CDS  gene_syn ATSPDS3, MFH8.5, MFH8_5, SPDS3, SPERMIDINE SYNTHASE 3, SPMS  gene SPDS3  function encodes a novel spermine synthase and is a paralog of previously characterized spermidine synthases, SPDS1 and SPDS2. SPDS3 forms heterodimers with SDPS2, which in turn forms heterodimers with SDPS1 in vivo. The gene does not complement speDelta3 deficiency of spermidine synthase in yeast but DOES complement speDelta4 deficiency.  go_component cytoplasm|GO:0005737|12220656|TAS  go_process polyamine biosynthetic process|GO:0006596|12220656|IDA  go_function spermidine synthase activity|GO:0004766|12220656|IDA  go_function spermidine synthase activity|GO:0004766|12220656|ISS  go_function spermine synthase activity|GO:0016768|12220656|IDA  go_function spermine synthase activity|GO:0016768|17560575|IDA  product SPDS3 (SPERMIDINE SYNTHASE 3); spermidine synthase/ spermine synthase  note SPERMIDINE SYNTHASE 3 (SPDS3); FUNCTIONS IN: spermine synthase activity, spermidine synthase activity; INVOLVED IN: polyamine biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: SPDS1 (spermidine synthase 1); spermidine synthase (TAIR:AT1G23820.1); Has 3756 Blast hits to 3755 proteins in 938 species: Archae - 113; Bacteria - 1732; Metazoa - 300; Fungi - 127; Plants - 322; Viruses - 0; Other Eukaryotes - 1162 (source: NCBI BLink).  protein_id AT5G53120.1p  transcript_id AT5G53120.1  protein_id AT5G53120.1p  transcript_id AT5G53120.1  
At5g53120	chr5:021535429	0.0	W/21535429-21535618,21535710-21535757,21535942-21536018,21536109-21536231,21536551-21536655,21536744-21536816,21536901-21536972,21537093-21537285,21537369-21537498,21537585-21537653	AT5G53120.2  CDS  gene_syn ATSPDS3, MFH8.5, MFH8_5, SPDS3, SPERMIDINE SYNTHASE 3, SPMS  gene SPDS3  function encodes a novel spermine synthase and is a paralog of previously characterized spermidine synthases, SPDS1 and SPDS2. SPDS3 forms heterodimers with SDPS2, which in turn forms heterodimers with SDPS1 in vivo. The gene does not complement speDelta3 deficiency of spermidine synthase in yeast but DOES complement speDelta4 deficiency.  go_component cytoplasm|GO:0005737|12220656|TAS  go_process polyamine biosynthetic process|GO:0006596|12220656|IDA  go_function spermidine synthase activity|GO:0004766|12220656|IDA  go_function spermidine synthase activity|GO:0004766|12220656|ISS  go_function spermine synthase activity|GO:0016768|12220656|IDA  go_function spermine synthase activity|GO:0016768|17560575|IDA  product SPDS3 (SPERMIDINE SYNTHASE 3); spermidine synthase/ spermine synthase  note SPERMIDINE SYNTHASE 3 (SPDS3); FUNCTIONS IN: spermine synthase activity, spermidine synthase activity; INVOLVED IN: polyamine biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: SPDS1 (spermidine synthase 1); spermidine synthase (TAIR:AT1G23820.1); Has 3756 Blast hits to 3755 proteins in 938 species: Archae - 113; Bacteria - 1732; Metazoa - 300; Fungi - 127; Plants - 322; Viruses - 0; Other Eukaryotes - 1162 (source: NCBI BLink).  protein_id AT5G53120.2p  transcript_id AT5G53120.2  protein_id AT5G53120.2p  transcript_id AT5G53120.2  
At5g53120	chr5:021535429	0.0	W/21535429-21535618,21535710-21535757,21535942-21536018,21536109-21536231,21536551-21536655,21536744-21536816,21536901-21536972,21537093-21537285,21537369-21537498,21537585-21537653	AT5G53120.3  CDS  gene_syn ATSPDS3, MFH8.5, MFH8_5, SPDS3, SPERMIDINE SYNTHASE 3, SPMS  gene SPDS3  function encodes a novel spermine synthase and is a paralog of previously characterized spermidine synthases, SPDS1 and SPDS2. SPDS3 forms heterodimers with SDPS2, which in turn forms heterodimers with SDPS1 in vivo. The gene does not complement speDelta3 deficiency of spermidine synthase in yeast but DOES complement speDelta4 deficiency.  go_component cytoplasm|GO:0005737|12220656|TAS  go_process polyamine biosynthetic process|GO:0006596|12220656|IDA  go_function spermidine synthase activity|GO:0004766|12220656|IDA  go_function spermidine synthase activity|GO:0004766|12220656|ISS  go_function spermine synthase activity|GO:0016768|12220656|IDA  go_function spermine synthase activity|GO:0016768|17560575|IDA  product SPDS3 (SPERMIDINE SYNTHASE 3); spermidine synthase/ spermine synthase  note SPERMIDINE SYNTHASE 3 (SPDS3); FUNCTIONS IN: spermine synthase activity, spermidine synthase activity; INVOLVED IN: polyamine biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: SPDS1 (spermidine synthase 1); spermidine synthase (TAIR:AT1G23820.1); Has 3756 Blast hits to 3755 proteins in 938 species: Archae - 113; Bacteria - 1732; Metazoa - 300; Fungi - 127; Plants - 322; Viruses - 0; Other Eukaryotes - 1162 (source: NCBI BLink).  protein_id AT5G53120.3p  transcript_id AT5G53120.3  protein_id AT5G53120.3p  transcript_id AT5G53120.3  
At5g53120	chr5:021535429	0.0	W/21535429-21535618,21535710-21535757,21535942-21536018,21536109-21536231,21536551-21536655,21536744-21536816,21536901-21536972,21537093-21537285,21537369-21537498,21537585-21537653	AT5G53120.4  CDS  gene_syn ATSPDS3, MFH8.5, MFH8_5, SPDS3, SPERMIDINE SYNTHASE 3, SPMS  gene SPDS3  function encodes a novel spermine synthase and is a paralog of previously characterized spermidine synthases, SPDS1 and SPDS2. SPDS3 forms heterodimers with SDPS2, which in turn forms heterodimers with SDPS1 in vivo. The gene does not complement speDelta3 deficiency of spermidine synthase in yeast but DOES complement speDelta4 deficiency.  go_component cytoplasm|GO:0005737|12220656|TAS  go_process polyamine biosynthetic process|GO:0006596|12220656|IDA  go_function spermidine synthase activity|GO:0004766|12220656|IDA  go_function spermidine synthase activity|GO:0004766|12220656|ISS  go_function spermine synthase activity|GO:0016768|12220656|IDA  go_function spermine synthase activity|GO:0016768|17560575|IDA  product SPDS3 (SPERMIDINE SYNTHASE 3); spermidine synthase/ spermine synthase  note SPERMIDINE SYNTHASE 3 (SPDS3); FUNCTIONS IN: spermine synthase activity, spermidine synthase activity; INVOLVED IN: polyamine biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: SPDS1 (spermidine synthase 1); spermidine synthase (TAIR:AT1G23820.1); Has 3756 Blast hits to 3755 proteins in 938 species: Archae - 113; Bacteria - 1732; Metazoa - 300; Fungi - 127; Plants - 322; Viruses - 0; Other Eukaryotes - 1162 (source: NCBI BLink).  protein_id AT5G53120.4p  transcript_id AT5G53120.4  protein_id AT5G53120.4p  transcript_id AT5G53120.4  
At5g53120	chr5:021535429	0.0	W/21535429-21535618,21535710-21535757,21535942-21536018,21536109-21536231,21536551-21536655,21536744-21536816,21536901-21536972,21537093-21537285,21537369-21537498,21537585-21537653	AT5G53120.5  CDS  gene_syn ATSPDS3, MFH8.5, MFH8_5, SPDS3, SPERMIDINE SYNTHASE 3, SPMS  gene SPDS3  function encodes a novel spermine synthase and is a paralog of previously characterized spermidine synthases, SPDS1 and SPDS2. SPDS3 forms heterodimers with SDPS2, which in turn forms heterodimers with SDPS1 in vivo. The gene does not complement speDelta3 deficiency of spermidine synthase in yeast but DOES complement speDelta4 deficiency.  go_component cytoplasm|GO:0005737|12220656|TAS  go_process polyamine biosynthetic process|GO:0006596|12220656|IDA  go_function spermidine synthase activity|GO:0004766|12220656|IDA  go_function spermidine synthase activity|GO:0004766|12220656|ISS  go_function spermine synthase activity|GO:0016768|12220656|IDA  go_function spermine synthase activity|GO:0016768|17560575|IDA  product SPDS3 (SPERMIDINE SYNTHASE 3); spermidine synthase/ spermine synthase  note SPERMIDINE SYNTHASE 3 (SPDS3); FUNCTIONS IN: spermine synthase activity, spermidine synthase activity; INVOLVED IN: polyamine biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: SPDS1 (spermidine synthase 1); spermidine synthase (TAIR:AT1G23820.1); Has 3756 Blast hits to 3755 proteins in 938 species: Archae - 113; Bacteria - 1732; Metazoa - 300; Fungi - 127; Plants - 322; Viruses - 0; Other Eukaryotes - 1162 (source: NCBI BLink).  protein_id AT5G53120.5p  transcript_id AT5G53120.5  protein_id AT5G53120.5p  transcript_id AT5G53120.5  
At5g53130	chr5:021540462	0.0	C/21540462-21540490,21539814-21540384,21539517-21539729,21539139-21539425,21538932-21539043,21538621-21538857,21537830-21538531	AT5G53130.1  CDS  gene_syn ATCNGC1, CNGC1, CYCLIC NUCLEOTIDE GATED CHANNEL 1, MFH8.6, MFH8_6  gene CNGC1  function member of Cyclic nucleotide gated channel family  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|16317039|IDA  go_process potassium ion transport|GO:0006813|16317039|IGI  go_process calcium ion transport|GO:0006816|16317039|IGI  go_function intracellular cyclic nucleotide activated cation channel activity|GO:0005221|16317039|IGI  go_function inward rectifier potassium channel activity|GO:0005242|10341447|IGI  go_function cation channel activity|GO:0005261||ISS  go_function calmodulin binding|GO:0005516|11782485|IEP  go_function calmodulin binding|GO:0005516|11782485|TAS  go_function calmodulin binding|GO:0005516||ISS  go_function cyclic nucleotide binding|GO:0030551||ISS  product CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1); calmodulin binding / cation channel/ cyclic nucleotide binding / intracellular cyclic nucleotide activated cation channel/ inward rectifier potassium channel  note CYCLIC NUCLEOTIDE GATED CHANNEL 1 (CNGC1); FUNCTIONS IN: cyclic nucleotide binding, inward rectifier potassium channel activity, intracellular cyclic nucleotide activated cation channel activity, calmodulin binding, cation channel activity; INVOLVED IN: potassium ion transport, calcium ion transport; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding, conserved site (InterPro:IPR018488), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: ATCNGC13; calmodulin binding / cyclic nucleotide binding / ion channel (TAIR:AT4G01010.1); Has 2909 Blast hits to 2800 proteins in 230 species: Archae - 0; Bacteria - 73; Metazoa - 1453; Fungi - 7; Plants - 636; Viruses - 0; Other Eukaryotes - 740 (source: NCBI BLink).  protein_id AT5G53130.1p  transcript_id AT5G53130.1  protein_id AT5G53130.1p  transcript_id AT5G53130.1  
At5g53135	chr5:021542929	0.0	W/21542929-21546555	AT5G53135.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 6.9e-199 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At5g53140	chr5:021549228	0.0	W/21549228-21549511,21549863-21549990,21550361-21550459,21550557-21550715,21550928-21551014,21551409-21551500,21551633-21551707,21551794-21552132	AT5G53140.1  CDS  gene_syn MFH8.8, MFH8_8  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: WIN2 (HOPW1-1-INTERACTING 2); protein serine/threonine phosphatase (TAIR:AT4G31750.1); Has 11808 Blast hits to 6217 proteins in 692 species: Archae - 16; Bacteria - 2091; Metazoa - 2394; Fungi - 611; Plants - 1725; Viruses - 88; Other Eukaryotes - 4883 (source: NCBI BLink).  protein_id AT5G53140.1p  transcript_id AT5G53140.1  protein_id AT5G53140.1p  transcript_id AT5G53140.1  
At5g53144	chr5:021553622	0.0	W/21553622-21553720	AT5G53144.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G53144.1p  transcript_id AT5G53144.1  protein_id AT5G53144.1p  transcript_id AT5G53144.1  
At5g53150	chr5:021554935	0.0	W/21554935-21556006,21556094-21557202	AT5G53150.1  CDS  gene_syn MFH8.9, MFH8_9  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product heat shock protein binding / unfolded protein binding  note heat shock protein binding / unfolded protein binding; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G25560.1); Has 13174 Blast hits to 13067 proteins in 1787 species: Archae - 81; Bacteria - 4470; Metazoa - 2834; Fungi - 991; Plants - 1116; Viruses - 8; Other Eukaryotes - 3674 (source: NCBI BLink).  protein_id AT5G53150.1p  transcript_id AT5G53150.1  protein_id AT5G53150.1p  transcript_id AT5G53150.1  
At5g53160	chr5:021561026	0.0	W/21561026-21561163,21561445-21561660,21561741-21561953	AT5G53160.2  CDS  gene_syn MFH8.10, MFH8_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G01360.1); Has 181 Blast hits to 181 proteins in 19 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 179; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G53160.2p  transcript_id AT5G53160.2  protein_id AT5G53160.2p  transcript_id AT5G53160.2  
At5g53160	chr5:021561026	0.0	W/21561026-21561163,21561445-21561780	AT5G53160.1  CDS  gene_syn MFH8.10, MFH8_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27920.1); Has 177 Blast hits to 177 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G53160.1p  transcript_id AT5G53160.1  protein_id AT5G53160.1p  transcript_id AT5G53160.1  
At5g53170	chr5:021567312	0.0	C/21567312-21567922,21567052-21567205,21566679-21566771,21566493-21566578,21566211-21566334,21565777-21565896,21565601-21565651,21565374-21565435,21565172-21565229,21564943-21565068,21564770-21564850,21564369-21564498,21564092-21564240,21563721-21564002,21563431-21563520,21563282-21563335,21563023-21563172	AT5G53170.1  CDS  gene_syn FTSH11, FtsH protease 11, MFH8.11, MFH8_11  gene FTSH11  function encodes an FtsH protease that is localized to the chloroplast and the mitochondrion  go_component chloroplast|GO:0009507|18431481|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component chloroplast|GO:0009507|14630971|IDA  go_process response to heat|GO:0009408|16972866|IMP  go_process response to high light intensity|GO:0009644|16972866|IMP  go_process PSII associated light-harvesting complex II catabolic process|GO:0010304|16157880|TAS  go_function ATP-dependent peptidase activity|GO:0004176|12185496|ISS  go_function metallopeptidase activity|GO:0008237||ISS  go_function ATPase activity|GO:0016887||ISS  product FTSH11 (FtsH protease 11); ATP-dependent peptidase/ ATPase/ metallopeptidase  note FtsH protease 11 (FTSH11); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: response to high light intensity, response to heat, PSII associated light-harvesting complex II catabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: ftsh4 (FtsH protease 4); ATP-dependent peptidase/ ATPase/ metallopeptidase (TAIR:AT2G26140.1); Has 23266 Blast hits to 21610 proteins in 1784 species: Archae - 846; Bacteria - 5880; Metazoa - 4023; Fungi - 2348; Plants - 1702; Viruses - 51; Other Eukaryotes - 8416 (source: NCBI BLink).  protein_id AT5G53170.1p  transcript_id AT5G53170.1  protein_id AT5G53170.1p  transcript_id AT5G53170.1  
At5g53180	chr5:021571044	0.0	C/21571044-21571081,21570834-21570891,21570166-21570228,21569999-21570072,21569516-21569611,21569351-21569408,21569065-21569169,21568898-21568979,21568393-21568808	AT5G53180.2  CDS  gene_syn ATPTB2, MFH8.12, MFH8_12, POLYPYRIMIDINE TRACT-BINDING PROTEIN 2, PTB2  gene PTB2  function Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination.  go_function nucleotide binding|GO:0000166||IEA  go_component nucleus|GO:0005634|19122186|IDA  go_component cytoplasm|GO:0005737|19122186|IDA  go_process pollen germination|GO:0009846|19122186|IGI  go_function RNA binding|GO:0003723||ISS  product PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2); RNA binding / nucleotide binding  note POLYPYRIMIDINE TRACT-BINDING PROTEIN 2 (PTB2); FUNCTIONS IN: RNA binding, nucleotide binding; INVOLVED IN: pollen germination; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1); RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT3G01150.1); Has 1307 Blast hits to 788 proteins in 110 species: Archae - 0; Bacteria - 8; Metazoa - 987; Fungi - 34; Plants - 175; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).  protein_id AT5G53180.2p  transcript_id AT5G53180.2  protein_id AT5G53180.2p  transcript_id AT5G53180.2  
At5g53180	chr5:021571352	0.0	C/21571352-21571537,21571044-21571253,21570166-21570228,21569999-21570072,21569516-21569611,21569351-21569408,21569065-21569169,21568898-21568979,21568393-21568808	AT5G53180.1  CDS  gene_syn ATPTB2, MFH8.12, MFH8_12, POLYPYRIMIDINE TRACT-BINDING PROTEIN 2, PTB2  gene PTB2  function Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component nucleus|GO:0005634|19122186|IDA  go_component cytoplasm|GO:0005737|19122186|IDA  go_process pollen germination|GO:0009846|19122186|IGI  go_function RNA binding|GO:0003723||ISS  product PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2); RNA binding / nucleic acid binding / nucleotide binding  note POLYPYRIMIDINE TRACT-BINDING PROTEIN 2 (PTB2); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: pollen germination; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1); RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT3G01150.1); Has 1487 Blast hits to 883 proteins in 129 species: Archae - 0; Bacteria - 8; Metazoa - 1096; Fungi - 47; Plants - 179; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).  protein_id AT5G53180.1p  transcript_id AT5G53180.1  protein_id AT5G53180.1p  transcript_id AT5G53180.1  
At5g53190	chr5:021574248	0.0	C/21574248-21574284,21574015-21574051,21573688-21573910,21573433-21573594,21573207-21573326,21572417-21572629	AT5G53190.1  CDS  gene_syn MFH8.13, MFH8_13  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  product nodulin MtN3 family protein  note nodulin MtN3 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: MtN3 and saliva related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), MtN3 and saliva related transmembrane protein (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: nodulin MtN3 family protein (TAIR:AT1G21460.1); Has 523 Blast hits to 518 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 182; Fungi - 0; Plants - 291; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT5G53190.1p  transcript_id AT5G53190.1  protein_id AT5G53190.1p  transcript_id AT5G53190.1  
At5g53200	chr5:021582913	0.0	W/21582913-21582976,21583270-21583357,21583792-21583960	AT5G53200.1  CDS  gene_syn MFH8.14, MFH8_14, TRIPTYCHON, TRY  gene TRY  go_process trichome branching|GO:0010091|10572032|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product TRY (TRIPTYCHON); DNA binding / transcription factor  note TRIPTYCHON (TRY); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: trichome branching, regulation of transcription; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: ETC2; DNA binding / transcription factor (TAIR:AT2G30420.1); Has 1413 Blast hits to 1413 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 1396; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT5G53200.1p  transcript_id AT5G53200.1  protein_id AT5G53200.1p  transcript_id AT5G53200.1  
At5g53205	chr5:021585598	0.0	C/21585598-21585774	AT5G53205.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G53205.1p  transcript_id AT5G53205.1  protein_id AT5G53205.1p  transcript_id AT5G53205.1  
At5g53210	chr5:021588543	0.0	C/21588543-21588941,21587600-21588229,21586606-21586671	AT5G53210.1  CDS  gene_syn MFH8.15, SPCH, SPEECHLESS  gene SPCH  function Encodes a basic helix-loop-helix (bHLH) transcription factor that is necessary and sufficient for the asymmetric divisions that establish the stomatal lineage in Arabidopsis thaliana. Expression of SPCH in young epidermal cells allows these cells to make asymmetric divisions. SPCH is a substrate of a kinase MPK3 and MPK6.  go_component nucleus|GO:0005634|19008449|IDA  go_process stomatal complex development|GO:0010374|17183265|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product SPCH (SPEECHLESS); DNA binding / transcription factor  note SPEECHLESS (SPCH); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: stomatal complex development, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: MUTE (MUTE); DNA binding / transcription factor (TAIR:AT3G06120.1); Has 2452 Blast hits to 2103 proteins in 258 species: Archae - 0; Bacteria - 52; Metazoa - 553; Fungi - 175; Plants - 1296; Viruses - 108; Other Eukaryotes - 268 (source: NCBI BLink).  protein_id AT5G53210.1p  transcript_id AT5G53210.1  protein_id AT5G53210.1p  transcript_id AT5G53210.1  
At5g53220	chr5:021596824	0.0	W/21596824-21597734,21597809-21598004	AT5G53220.1  CDS  gene_syn K19E1.2, K19E1_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 2868 Blast hits to 2302 proteins in 251 species: Archae - 0; Bacteria - 119; Metazoa - 1061; Fungi - 519; Plants - 138; Viruses - 49; Other Eukaryotes - 982 (source: NCBI BLink).  protein_id AT5G53220.1p  transcript_id AT5G53220.1  protein_id AT5G53220.1p  transcript_id AT5G53220.1  
At5g53220	chr5:021596824	0.0	W/21596824-21597734,21597809-21598004	AT5G53220.2  CDS  gene_syn K19E1.2, K19E1_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 2868 Blast hits to 2302 proteins in 251 species: Archae - 0; Bacteria - 119; Metazoa - 1061; Fungi - 519; Plants - 138; Viruses - 49; Other Eukaryotes - 982 (source: NCBI BLink).  protein_id AT5G53220.2p  transcript_id AT5G53220.2  protein_id AT5G53220.2p  transcript_id AT5G53220.2  
At5g53220	chr5:021596824	0.0	W/21596824-21597734,21597809-21598004	AT5G53220.3  CDS  gene_syn K19E1.2, K19E1_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 2868 Blast hits to 2302 proteins in 251 species: Archae - 0; Bacteria - 119; Metazoa - 1061; Fungi - 519; Plants - 138; Viruses - 49; Other Eukaryotes - 982 (source: NCBI BLink).  protein_id AT5G53220.3p  transcript_id AT5G53220.3  protein_id AT5G53220.3p  transcript_id AT5G53220.3  
At5g53230	chr5:021598866	0.0	W/21598866-21599942	AT5G53230.1  CDS  gene_syn K19E1.3, K19E1_3  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55270.1); Has 125 Blast hits to 124 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G53230.1p  transcript_id AT5G53230.1  protein_id AT5G53230.1p  transcript_id AT5G53230.1  
At5g53240	chr5:021601547	0.0	W/21601547-21602632	AT5G53240.1  CDS  gene_syn K19E1.4, K19E1_4  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55270.1); Has 123 Blast hits to 121 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 123; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G53240.1p  transcript_id AT5G53240.1  protein_id AT5G53240.1p  transcript_id AT5G53240.1  
At5g53250	chr5:021603715	0.0	W/21603715-21603832,21603934-21604007	AT5G53250.1  CDS  gene_syn AGP22, ARABINOGALACTAN PROTEIN 22, ATAGP22, K19E1.5, K19E1_5  gene AGP22  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  product AGP22 (ARABINOGALACTAN PROTEIN 22)  note ARABINOGALACTAN PROTEIN 22 (AGP22); LOCATED IN: anchored to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1070 (InterPro:IPR009424); BEST Arabidopsis thaliana protein match is: AGP41 (ARABINOGALACTAN-PROTEIN 41) (TAIR:AT5G24105.1); Has 64 Blast hits to 64 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G53250.1p  transcript_id AT5G53250.1  protein_id AT5G53250.1p  transcript_id AT5G53250.1  
At5g53260	chr5:021605588	0.0	C/21605588-21605674,21604662-21605105	AT5G53260.1  CDS  gene_syn K19E1.6, K19E1_6  go_process multicellular organismal development|GO:0007275||ISS  go_function molecular_function|GO:0003674||ND  product seed maturation family protein  note seed maturation family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: multicellular organismal development; CONTAINS InterPro DOMAIN/s: Seed maturation protein (InterPro:IPR007011); BEST Arabidopsis thaliana protein match is: seed maturation family protein (TAIR:AT5G53270.1); Has 65 Blast hits to 65 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G53260.1p  transcript_id AT5G53260.1  protein_id AT5G53260.1p  transcript_id AT5G53260.1  
At5g53270	chr5:021606271	0.0	C/21606271-21606750	AT5G53270.1  CDS  gene_syn K19E1.7, K19E1_7  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function molecular_function|GO:0003674||ND  product seed maturation family protein  note seed maturation family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: multicellular organismal development; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Seed maturation protein (InterPro:IPR007011); BEST Arabidopsis thaliana protein match is: seed maturation family protein (TAIR:AT5G53260.1); Has 65 Blast hits to 65 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G53270.1p  transcript_id AT5G53270.1  protein_id AT5G53270.1p  transcript_id AT5G53270.1  
At5g53280	chr5:021607586	0.0	W/21607586-21607891,21608568-21609080	AT5G53280.1  CDS  gene_syn K19E1.8, K19E1_8, PDV1, PLASTID DIVISION1  gene PDV1  function An integral outer envelope membrane protein (as its homolog PDV2), component of the plastid division machinery. Similar to ARC5, PDV1 localized to a discontinuous ring at the division site in wild-type plants. PDV1 and PDV2 are required for localization of ARC5 at the chloroplast division site. Topological analysis showed that the large N-terminal region of PDV1 upstream of the transmembrane helix bearing a putative coiled-coil domain is exposed to the cytosol. Mutation of the conserved PDV1 C-terminal Gly residue did not block PDV1 insertion into the outer envelope membrane but did abolish its localization to the division site.  go_component chloroplast outer membrane|GO:0009707|16998069|IDA  go_process chloroplast fission|GO:0010020|16998069|IMP  go_function molecular_function|GO:0003674||ND  product PDV1 (PLASTID DIVISION1)  note PLASTID DIVISION1 (PDV1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: chloroplast fission; LOCATED IN: chloroplast outer membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: PDV2 (PLASTID DIVISION2) (TAIR:AT2G16070.2); Has 47 Blast hits to 47 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G53280.1p  transcript_id AT5G53280.1  protein_id AT5G53280.1p  transcript_id AT5G53280.1  
At5g53290	chr5:021617961	0.0	C/21617961-21619025	AT5G53290.1  CDS  gene_syn CRF3, CYTOKININ RESPONSE FACTOR 3, K19E1.9, K19E1_9  gene CRF3  function encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process transcription factor import into nucleus|GO:0042991|16832061|IDA  go_process leaf development|GO:0048366|16832061|IMP  go_process cotyledon development|GO:0048825|16832061|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product CRF3 (CYTOKININ RESPONSE FACTOR 3); DNA binding / transcription factor  note CYTOKININ RESPONSE FACTOR 3 (CRF3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: cotyledon development, regulation of transcription, DNA-dependent, leaf development, transcription factor import into nucleus; LOCATED IN: nucleus; EXPRESSED IN: shoot apex, root, leaf; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: CRF4 (CYTOKININ RESPONSE FACTOR 4); DNA binding / transcription factor (TAIR:AT4G27950.1); Has 3945 Blast hits to 3745 proteins in 205 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 2; Plants - 3919; Viruses - 2; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT5G53290.1p  transcript_id AT5G53290.1  protein_id AT5G53290.1p  transcript_id AT5G53290.1  
At5g53300	chr5:021633920	0.0	C/21633920-21633989,21633435-21633562,21633187-21633318	AT5G53300.3  CDS  gene_syn UBC10, ubiquitin-conjugating enzyme 10  gene UBC10  function Encodes a ubiquitin conjugating enzyme.  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC10 (ubiquitin-conjugating enzyme 10); ubiquitin-protein ligase  note ubiquitin-conjugating enzyme 10 (UBC10); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC8 (UBIQUITIN CONJUGATING ENZYME 8); protein binding / ubiquitin-protein ligase (TAIR:AT5G41700.2).  protein_id AT5G53300.3p  transcript_id AT5G53300.3  protein_id AT5G53300.3p  transcript_id AT5G53300.3  
At5g53300	chr5:021633920	0.0	C/21633920-21633989,21633435-21633562,21633214-21633318,21632802-21632945	AT5G53300.1  CDS  gene_syn UBC10, ubiquitin-conjugating enzyme 10  gene UBC10  function Encodes a ubiquitin conjugating enzyme.  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC10 (ubiquitin-conjugating enzyme 10); ubiquitin-protein ligase  note ubiquitin-conjugating enzyme 10 (UBC10); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC9 (UBIQUITIN CONJUGATING ENZYME 9); ubiquitin-protein ligase (TAIR:AT4G27960.2); Has 7883 Blast hits to 7864 proteins in 311 species: Archae - 0; Bacteria - 0; Metazoa - 3801; Fungi - 1538; Plants - 1132; Viruses - 22; Other Eukaryotes - 1390 (source: NCBI BLink).  protein_id AT5G53300.1p  transcript_id AT5G53300.1  protein_id AT5G53300.1p  transcript_id AT5G53300.1  
At5g53300	chr5:021633920	0.0	C/21633920-21633989,21633435-21633562,21633214-21633318,21632802-21632945	AT5G53300.2  CDS  gene_syn UBC10, ubiquitin-conjugating enzyme 10  gene UBC10  function Encodes a ubiquitin conjugating enzyme.  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC10 (ubiquitin-conjugating enzyme 10); ubiquitin-protein ligase  note ubiquitin-conjugating enzyme 10 (UBC10); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC9 (UBIQUITIN CONJUGATING ENZYME 9); ubiquitin-protein ligase (TAIR:AT4G27960.2); Has 7883 Blast hits to 7864 proteins in 311 species: Archae - 0; Bacteria - 0; Metazoa - 3801; Fungi - 1538; Plants - 1132; Viruses - 22; Other Eukaryotes - 1390 (source: NCBI BLink).  protein_id AT5G53300.2p  transcript_id AT5G53300.2  protein_id AT5G53300.2p  transcript_id AT5G53300.2  
At5g53310	chr5:021634657	0.0	W/21634657-21634879,21635092-21635410,21635915-21635973,21636063-21636094	AT5G53310.1  CDS  gene_syn K19E1.11, K19E1_11  go_component plasma membrane|GO:0005886|17317660|IDA  go_function motor activity|GO:0003774||IEA  go_process biological_process|GO:0008150||ND  product myosin heavy chain-related  note myosin heavy chain-related; FUNCTIONS IN: motor activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Myosin tail 2 (InterPro:IPR010926); Has 312 Blast hits to 312 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 197; Fungi - 37; Plants - 16; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT5G53310.1p  transcript_id AT5G53310.1  protein_id AT5G53310.1p  transcript_id AT5G53310.1  
At5g53320	chr5:021637158	0.0	C/21637158-21638337,21636453-21637078	AT5G53320.1  CDS  gene_syn K19E1.12, K19E1_12  go_component plasma membrane|GO:0005886|14506206|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: sepal, hypocotyl, guard cell, root, cultured cell; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT5G24100.1); Has 78317 Blast hits to 52547 proteins in 1579 species: Archae - 44; Bacteria - 3882; Metazoa - 23147; Fungi - 2805; Plants - 39699; Viruses - 180; Other Eukaryotes - 8560 (source: NCBI BLink).  protein_id AT5G53320.1p  transcript_id AT5G53320.1  protein_id AT5G53320.1p  transcript_id AT5G53320.1  
At5g53330	chr5:021639236	0.0	W/21639236-21639437,21639521-21639573,21639656-21639823,21640242-21640349,21640582-21640716	AT5G53330.1  CDS  gene_syn K19E1.13, K19E1_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940); Has 28 Blast hits to 28 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 2; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G53330.1p  transcript_id AT5G53330.1  protein_id AT5G53330.1p  transcript_id AT5G53330.1  
At5g53340	chr5:021643095	0.0	C/21643095-21643195,21642939-21643002,21642754-21642803,21642473-21642666,21642322-21642385,21642149-21642221,21641922-21642045,21641731-21641818,21641579-21641629,21641412-21641483,21641176-21641288,21641045-21641064	AT5G53340.2  CDS  gene_syn K19E1.14, K19E1_14  go_component membrane|GO:0016020||IEA  go_process protein amino acid glycosylation|GO:0006486||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product galactosyltransferase family protein  note galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT2G25300.1); Has 471 Blast hits to 470 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 200; Fungi - 0; Plants - 265; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G53340.2p  transcript_id AT5G53340.2  protein_id AT5G53340.2p  transcript_id AT5G53340.2  
At5g53340	chr5:021643095	0.0	C/21643095-21643195,21642939-21643002,21642754-21642803,21642473-21642666,21642322-21642385,21642149-21642221,21641922-21642045,21641731-21641818,21641579-21641629,21641412-21641483,21641176-21641288,21641045-21641067	AT5G53340.1  CDS  gene_syn K19E1.14, K19E1_14  go_component membrane|GO:0016020||IEA  go_process protein amino acid glycosylation|GO:0006486||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product galactosyltransferase family protein  note galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT2G25300.1); Has 473 Blast hits to 472 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 202; Fungi - 0; Plants - 265; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G53340.1p  transcript_id AT5G53340.1  protein_id AT5G53340.1p  transcript_id AT5G53340.1  
At5g53350	chr5:021644060	0.0	W/21644060-21644599,21644752-21644813,21644934-21645034,21645164-21645243,21645345-21645395,21645490-21645564,21645672-21645749,21645908-21645964,21646260-21646330,21646431-21646530,21646627-21646731,21646822-21646884,21646965-21647087,21647181-21647342,21647432-21647503	AT5G53350.1  CDS  gene_syn CLPX, K19E1.15, K19E1_15  gene CLPX  function CLP protease regulatory subunit CLPX mRNA, nuclear gene  go_process protein transport|GO:0015031||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATPase activity|GO:0016887||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component mitochondrion|GO:0005739|11352464|IDA  go_component mitochondrial matrix|GO:0005759|11352464|IDA  go_function ATPase activity|GO:0016887||ISS  product CLPX; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding  note CLPX; FUNCTIONS IN: protein binding, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein transport; LOCATED IN: mitochondrion, mitochondrial matrix; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase associated with various cellular activities, AAA-2 (InterPro:IPR013093), ClpX, ATPase regulatory subunit (InterPro:IPR004487); BEST Arabidopsis thaliana protein match is: ATP-dependent Clp protease ATP-binding subunit ClpX, putative (TAIR:AT1G33360.1); Has 18891 Blast hits to 16544 proteins in 1739 species: Archae - 393; Bacteria - 8514; Metazoa - 1468; Fungi - 715; Plants - 537; Viruses - 5; Other Eukaryotes - 7259 (source: NCBI BLink).  protein_id AT5G53350.1p  transcript_id AT5G53350.1  protein_id AT5G53350.1p  transcript_id AT5G53350.1  
At5g53360	chr5:021648485	0.0	W/21648485-21648820,21648904-21649269	AT5G53360.1  CDS  gene_syn K19E1.16, K19E1_16  go_component nucleus|GO:0005634||IEA  go_component endomembrane system|GO:0012505||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_process multicellular organismal development|GO:0007275||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_process multicellular organismal development|GO:0007275||ISS  product seven in absentia (SINA) family protein  note seven in absentia (SINA) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Seven in absentia protein, TRAF-like domain (InterPro:IPR018121), Zinc finger, SIAH-type (InterPro:IPR013010), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven in absentia protein (InterPro:IPR004162), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: seven in absentia (SINA) family protein (TAIR:AT4G27880.1); Has 1039 Blast hits to 1036 proteins in 614 species: Archae - 0; Bacteria - 0; Metazoa - 854; Fungi - 0; Plants - 179; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G53360.1p  transcript_id AT5G53360.1  protein_id AT5G53360.1p  transcript_id AT5G53360.1  
At5g53370	chr5:021650465	0.0	C/21650465-21651530,21649683-21650380	AT5G53370.1  CDS  gene_syn ATPMEPCRF, K19E1.17, K19E1_17, PECTIN METHYLESTERASE PCR FRAGMENT F, PMEPCRF  gene PMEPCRF  go_component cell wall|GO:0005618||IEA  go_process cell wall modification|GO:0042545||IEA  go_function pectinesterase activity|GO:0030599|9767082|ISS  product PMEPCRF (PECTIN METHYLESTERASE PCR FRAGMENT F); pectinesterase  note PECTIN METHYLESTERASE PCR FRAGMENT F (PMEPCRF); FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT3G49220.1); Has 1623 Blast hits to 1578 proteins in 274 species: Archae - 0; Bacteria - 403; Metazoa - 1; Fungi - 126; Plants - 1092; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G53370.1p  transcript_id AT5G53370.1  protein_id AT5G53370.1p  transcript_id AT5G53370.1  
At5g53380	chr5:021654601	0.0	W/21654601-21654802,21654867-21655447,21655524-21655590,21655684-21655796,21655873-21656082,21656156-21656281,21656387-21656539	AT5G53380.1  CDS  gene_syn K19E1.18, K19E1_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1298 (InterPro:IPR009721), Uncharacterised protein family UPF0089 (InterPro:IPR004255); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12420.1); Has 611 Blast hits to 606 proteins in 89 species: Archae - 2; Bacteria - 475; Metazoa - 9; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT5G53380.1p  transcript_id AT5G53380.1  protein_id AT5G53380.1p  transcript_id AT5G53380.1  
At5g53390	chr5:021659010	0.0	C/21659010-21659207,21658074-21658658,21657918-21657984,21657734-21657828,21657441-21657650,21657204-21657341,21656951-21657118	AT5G53390.1  CDS  gene_syn K19E1.19, K19E1_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1298 (InterPro:IPR009721), Uncharacterised protein family UPF0089 (InterPro:IPR004255); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38995.1); Has 659 Blast hits to 650 proteins in 103 species: Archae - 4; Bacteria - 519; Metazoa - 11; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT5G53390.1p  transcript_id AT5G53390.1  protein_id AT5G53390.1p  transcript_id AT5G53390.1  
At5g53400	chr5:021661588	0.0	W/21661588-21661990,21662476-21662648,21662750-21662798,21662900-21663066,21663159-21663242,21663345-21663383	AT5G53400.1  CDS  gene_syn MYN8.1, MYN8_1  go_component cellular_component|GO:0005575||ND  product nuclear movement family protein  note nuclear movement family protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CS domain (InterPro:IPR007052), HSP20-like chaperone (InterPro:IPR008978), CS (InterPro:IPR017447); BEST Arabidopsis thaliana protein match is: nuclear movement family protein (TAIR:AT4G27890.1); Has 1930 Blast hits to 1478 proteins in 221 species: Archae - 7; Bacteria - 113; Metazoa - 767; Fungi - 136; Plants - 100; Viruses - 4; Other Eukaryotes - 803 (source: NCBI BLink).  protein_id AT5G53400.1p  transcript_id AT5G53400.1  protein_id AT5G53400.1p  transcript_id AT5G53400.1  
At5g53410	chr5:021667939	0.0	W/21667939-21668046	AT5G53410.1  CDS  gene_syn MYN8.2, MYN8_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: carpel; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52080.1); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G53410.1p  transcript_id AT5G53410.1  protein_id AT5G53410.1p  transcript_id AT5G53410.1  
At5g53420	chr5:021673683	0.0	W/21673683-21673787,21674568-21675047,21675176-21675307,21675392-21675469	AT5G53420.1  CDS  gene_syn MYN8.3, MYN8_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27900.2); Has 863 Blast hits to 863 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 840; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT5G53420.1p  transcript_id AT5G53420.1  protein_id AT5G53420.1p  transcript_id AT5G53420.1  
At5g53420	chr5:021673683	0.0	W/21673683-21673787,21674568-21675080	AT5G53420.3  CDS  gene_syn MYN8.3, MYN8_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27900.2); Has 21 Blast hits to 21 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G53420.3p  transcript_id AT5G53420.3  protein_id AT5G53420.3p  transcript_id AT5G53420.3  
At5g53420	chr5:021674700	0.0	W/21674700-21675047,21675176-21675307,21675392-21675469	AT5G53420.2  CDS  gene_syn MYN8.3, MYN8_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27900.2); Has 863 Blast hits to 863 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 840; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT5G53420.2p  transcript_id AT5G53420.2  protein_id AT5G53420.2p  transcript_id AT5G53420.2  
At5g53430	chr5:021677623	0.0	W/21677623-21678450,21678536-21678591,21678674-21678887,21678978-21679103,21679178-21679246,21679342-21679410,21679495-21679586,21679678-21679770,21679907-21680042,21680143-21680245,21680338-21680437,21680705-21680829,21681065-21681210,21681359-21681463,21681574-21681638,21681723-21681936,21682034-21682120,21682213-21682272,21682363-21682452,21682550-21682636,21682723-21682797,21682892-21682992,21683076-21683166	AT5G53430.1  CDS  gene_syn ATX5, MYN8.4, MYN8_4, SDG29, SET DOMAIN GROUP 29, SET29  gene SDG29  function Homology Subgroup III; Orthology Group 2 - A putative histone methyltransferase (predicted to methylate H3K4) related to the Drosophila trithorax group proteins TRX and TRR and the yeast gene SET1. A plant line expressing an RNAi construct directed against this gene has reduced agrobacterium-mediated tumor formation.  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process DNA mediated transformation|GO:0009294|17827277|IMP  go_function DNA binding|GO:0003677||ISS  product SDG29 (SET DOMAIN GROUP 29); DNA binding / protein binding / zinc ion binding  note SET DOMAIN GROUP 29 (SDG29); FUNCTIONS IN: protein binding, DNA binding, zinc ion binding; INVOLVED IN: DNA mediated transformation, regulation of transcription, DNA-dependent; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), Zinc finger, PHD-type (InterPro:IPR001965), Post-SET zinc-binding region (InterPro:IPR003616), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: SDG16 (SET DOMAIN PROTEIN 16); protein binding / zinc ion binding (TAIR:AT4G27910.1); Has 5327 Blast hits to 5171 proteins in 337 species: Archae - 2; Bacteria - 281; Metazoa - 2717; Fungi - 541; Plants - 588; Viruses - 0; Other Eukaryotes - 1198 (source: NCBI BLink).  protein_id AT5G53430.1p  transcript_id AT5G53430.1  protein_id AT5G53430.1p  transcript_id AT5G53430.1  
At5g53440	chr5:021687448	0.0	C/21687448-21687970,21686222-21687101,21684724-21686014,21684539-21684625,21683679-21684443	AT5G53440.1  CDS  gene_syn MYN8.5, MYN8_5  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56660.1); Has 88601 Blast hits to 37007 proteins in 1302 species: Archae - 119; Bacteria - 9251; Metazoa - 40592; Fungi - 9450; Plants - 4889; Viruses - 520; Other Eukaryotes - 23780 (source: NCBI BLink).  protein_id AT5G53440.1p  transcript_id AT5G53440.1  protein_id AT5G53440.1p  transcript_id AT5G53440.1  
At5g53450	chr5:021689204	0.0	W/21689204-21689506,21689588-21689631,21689711-21689789,21689869-21689985,21690065-21690247,21690341-21690427,21690512-21690618,21690703-21690790,21690873-21690953,21691029-21691105,21691197-21691332,21691426-21691488,21691595-21692242	AT5G53450.1  CDS  gene_syn MYN8.6, MYN8_6, OBP3-responsive gene 1, ORG1  gene ORG1  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product ORG1 (OBP3-responsive gene 1); ATP binding / kinase/ protein kinase  note OBP3-responsive gene 1 (ORG1); FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Protein kinase-like (InterPro:IPR011009); Has 437 Blast hits to 437 proteins in 124 species: Archae - 0; Bacteria - 2; Metazoa - 146; Fungi - 39; Plants - 194; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT5G53450.1p  transcript_id AT5G53450.1  protein_id AT5G53450.1p  transcript_id AT5G53450.1  
At5g53450	chr5:021689444	0.0	W/21689444-21689506,21689588-21689631,21689711-21689789,21689869-21689985,21690065-21690247,21690341-21690427,21690512-21690618,21690703-21690790,21690873-21690953,21691029-21691105,21691197-21691332,21691426-21691488,21691595-21692242	AT5G53450.2  CDS  gene_syn MYN8.6, MYN8_6, OBP3-responsive gene 1, ORG1  gene ORG1  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product ORG1 (OBP3-responsive gene 1); ATP binding / kinase/ protein kinase  note OBP3-responsive gene 1 (ORG1); FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Protein kinase-like (InterPro:IPR011009); Has 437 Blast hits to 437 proteins in 124 species: Archae - 0; Bacteria - 2; Metazoa - 146; Fungi - 39; Plants - 194; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT5G53450.2p  transcript_id AT5G53450.2  protein_id AT5G53450.2p  transcript_id AT5G53450.2  
At5g53451	chr5:021693269	0.0	W/21693269-21693373	AT5G53451.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G53451.1p  transcript_id AT5G53451.1  protein_id AT5G53451.1p  transcript_id AT5G53451.1  
At5g53460	chr5:021700518	0.0	W/21700518-21700916,21701000-21701119,21701269-21701535,21701617-21701717,21701801-21701897,21702337-21702446,21702630-21702733,21702859-21703038,21703124-21703467,21703555-21703625,21703714-21704183,21704288-21705157,21705245-21705399,21705605-21705766,21705847-21707661,21707816-21708084,21708216-21708521,21708624-21708891,21709021-21709278,21709369-21709629	AT5G53460.1  CDS  gene_syn GLT1, MYN8.7, MYN8_7, NADH-GOGAT  gene GLT1  function NADH-dependent glutamate synthase  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component plastid|GO:0009536|7640525|TAS  go_process glutamate biosynthetic process|GO:0006537|7640525|IDA  go_process nitrate assimilation|GO:0042128||TAS  go_function glutamate synthase (NADH) activity|GO:0016040|7640525|IDA  product GLT1; glutamate synthase (NADH)  note GLT1; FUNCTIONS IN: glutamate synthase (NADH) activity; INVOLVED IN: nitrate assimilation, response to cadmium ion, glutamate biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase, class-II (InterPro:IPR000583), Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Aldolase-type TIM barrel (InterPro:IPR013785), Glutamate synthase, alpha subunit, C-terminal (InterPro:IPR002489), Glutamate synthase, NADH/NADPH, small subunit 1 (InterPro:IPR006005), Adrenodoxin reductase (InterPro:IPR000759), Fumarate reductase, C-terminal (InterPro:IPR012285), Glutamate synthase, central-N (InterPro:IPR006982), NAD(P)-binding (InterPro:IPR016040), Glutamate synthase, eukaryotic (InterPro:IPR012220), Alpha-helical ferredoxin (InterPro:IPR009051), Glutamate synthase, central-C (InterPro:IPR002932), Glutamine amidotransferase, type II (InterPro:IPR017932); BEST Arabidopsis thaliana protein match is: GLU1 (GLUTAMATE SYNTHASE 1); glutamate synthase (ferredoxin) (TAIR:AT5G04140.1); Has 27194 Blast hits to 27082 proteins in 1486 species: Archae - 368; Bacteria - 10115; Metazoa - 562; Fungi - 254; Plants - 338; Viruses - 0; Other Eukaryotes - 15557 (source: NCBI BLink).  protein_id AT5G53460.1p  transcript_id AT5G53460.1  protein_id AT5G53460.1p  transcript_id AT5G53460.1  
At5g53470	chr5:021710497	0.0	W/21710497-21710954,21711341-21711443,21711566-21711654,21711858-21711949,21712031-21712128,21712215-21712391	AT5G53470.1  CDS  gene_syn ACBP, ACBP1, ACYL-COA BINDING PROTEIN, ACYL-COA BINDING PROTEIN 1, MYN8.8, MYN8_8  gene ACBP1  function Encodes an acyl-CoA binding protein that is localized to vesicles,and plasma membrane especially in epidermal cells of heart, torpedo and cotyledon stage embryos, cell wall of the seed coat. Northern blot analysis showed that the 1.4 kb ACBP1 mRNA was expressed in silique, root, stem, leaf and flower.  go_component plasma membrane|GO:0005886|10363372|IDA  go_component plant-type cell wall|GO:0009505|10363372|IDA  go_process lipid transport|GO:0006869|10363372|TAS  go_process response to lead ion|GO:0010288|18182029|IEP  go_process response to lead ion|GO:0010288|18182029|IMP  go_function acyl-CoA binding|GO:0000062|9862500|IDA  go_function lead ion binding|GO:0032791|18182029|IDA  product ACBP1 (ACYL-COA BINDING PROTEIN 1); acyl-CoA binding / lead ion binding  note ACYL-COA BINDING PROTEIN 1 (ACBP1); FUNCTIONS IN: lead ion binding, acyl-CoA binding; INVOLVED IN: response to lead ion, lipid transport; LOCATED IN: plasma membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acyl-CoA-binding protein, ACBP (InterPro:IPR000582), FERM/acyl-CoA-binding protein, 3-helical bundle (InterPro:IPR014352), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ACBP2 (ACYL-COA BINDING PROTEIN ACBP 2); acyl-CoA binding / lead ion binding (TAIR:AT4G27780.1); Has 68030 Blast hits to 22038 proteins in 852 species: Archae - 97; Bacteria - 4572; Metazoa - 36517; Fungi - 3853; Plants - 1651; Viruses - 542; Other Eukaryotes - 20798 (source: NCBI BLink).  protein_id AT5G53470.1p  transcript_id AT5G53470.1  protein_id AT5G53470.1p  transcript_id AT5G53470.1  
At5g53480	chr5:021714016	0.0	W/21714016-21716429,21716511-21716709	AT5G53480.1  CDS  gene_syn MNC6.1, MNC6_1  go_component chloroplast|GO:0009507|15028209|IDA  go_process protein import into nucleus, docking|GO:0000059||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function binding|GO:0005488||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component nucleus|GO:0005634||ISS  go_component nuclear pore|GO:0005643||ISS  go_component cytoplasm|GO:0005737||ISS  go_process protein import into nucleus, docking|GO:0000059||ISS  go_function protein transporter activity|GO:0008565||ISS  product importin beta-2, putative  note importin beta-2, putative; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, chloroplast, nuclear pore, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding / protein transporter (TAIR:AT3G08947.1); Has 1271 Blast hits to 1245 proteins in 165 species: Archae - 0; Bacteria - 0; Metazoa - 604; Fungi - 380; Plants - 120; Viruses - 0; Other Eukaryotes - 167 (source: NCBI BLink).  protein_id AT5G53480.1p  transcript_id AT5G53480.1  protein_id AT5G53480.1p  transcript_id AT5G53480.1  
At5g53486	chr5:021721822	0.0	W/21721822-21721888,21721957-21722013,21722229-21722293,21722404-21722529	AT5G53486.4  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G53486.4p  transcript_id AT5G53486.4  protein_id AT5G53486.4p  transcript_id AT5G53486.4  
At5g53486	chr5:021721822	0.0	W/21721822-21721888,21722229-21722293,21722404-21722529	AT5G53486.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G53486.1p  transcript_id AT5G53486.1  protein_id AT5G53486.1p  transcript_id AT5G53486.1  
At5g53486	chr5:021721822	0.0	W/21721822-21721888,21722235-21722293,21722404-21722529	AT5G53486.3  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G53486.3p  transcript_id AT5G53486.3  protein_id AT5G53486.3p  transcript_id AT5G53486.3  
At5g53486	chr5:021722195	0.0	W/21722195-21722293,21722404-21722529	AT5G53486.2  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G53486.2p  transcript_id AT5G53486.2  protein_id AT5G53486.2p  transcript_id AT5G53486.2  
At5g53487	chr5:021723114	0.0	C/21723114-21723184	AT5G53487.1  tRNA  gene_syn 67846.TRNA-GLY-1, 67847.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: CCC)  transcript_id AT5G53487.1  
At5g53490	chr5:021724516	0.0	C/21724516-21724621,21724151-21724281,21723803-21724049,21723488-21723711	AT5G53490.2  CDS  gene_syn MNC6.3, MNC6_3  function thylakoid lumenal 17.4 kDa protein, chloroplast, identical to SP:P81760 Thylakoid lumenal 17.4 kDa protein, chloroplast precursor (P17.4) {Arabidopsis thaliana}. Putative pentapeptide protein.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product thylakoid lumenal 17.4 kDa protein, chloroplast  note thylakoid lumenal 17.4 kDa protein, chloroplast; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pentapeptide repeat (InterPro:IPR001646); BEST Arabidopsis thaliana protein match is: thylakoid lumenal protein-related (TAIR:AT1G12250.2); Has 1815 Blast hits to 1377 proteins in 262 species: Archae - 42; Bacteria - 1277; Metazoa - 1; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 416 (source: NCBI BLink).  protein_id AT5G53490.2p  transcript_id AT5G53490.2  protein_id AT5G53490.2p  transcript_id AT5G53490.2  
At5g53490	chr5:021724516	0.0	C/21724516-21724621,21724151-21724284,21723803-21724049,21723488-21723711	AT5G53490.1  CDS  gene_syn MNC6.3, MNC6_3  function thylakoid lumenal 17.4 kDa protein, chloroplast, identical to SP:P81760 Thylakoid lumenal 17.4 kDa protein, chloroplast precursor (P17.4) {Arabidopsis thaliana}. Putative pentapeptide protein.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product thylakoid lumenal 17.4 kDa protein, chloroplast  note thylakoid lumenal 17.4 kDa protein, chloroplast; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pentapeptide repeat (InterPro:IPR001646); BEST Arabidopsis thaliana protein match is: thylakoid lumenal protein-related (TAIR:AT1G12250.2); Has 1814 Blast hits to 1376 proteins in 262 species: Archae - 42; Bacteria - 1277; Metazoa - 1; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 415 (source: NCBI BLink).  protein_id AT5G53490.1p  transcript_id AT5G53490.1  protein_id AT5G53490.1p  transcript_id AT5G53490.1  
At5g53500	chr5:021727505	0.0	C/21727505-21728524,21727311-21727401,21726923-21727212,21726735-21726828,21726167-21726636	AT5G53500.1  CDS  gene_syn MNC6.4, MNC6_4  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_process signal transduction|GO:0007165||ISS  go_function signal transducer activity|GO:0004871||ISS  product WD-40 repeat family protein  note WD-40 repeat family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: signal transduction; LOCATED IN: heterotrimeric G-protein complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein (TAIR:AT5G24320.1); Has 22976 Blast hits to 14988 proteins in 520 species: Archae - 48; Bacteria - 3424; Metazoa - 10283; Fungi - 4273; Plants - 1888; Viruses - 0; Other Eukaryotes - 3060 (source: NCBI BLink).  protein_id AT5G53500.1p  transcript_id AT5G53500.1  protein_id AT5G53500.1p  transcript_id AT5G53500.1  
At5g53510	chr5:021738849	0.0	W/21738849-21739340,21739737-21739834,21739916-21740485,21740620-21740881,21741205-21741387,21741462-21742082	AT5G53510.1  CDS  gene_syn ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 9, ATOPT9, MNC6.5, MNC6_5, OLIGOPEPTIDE TRANSPORTER 9, OPT9  gene ATOPT9  function oligopeptide transporter  go_component membrane|GO:0016020|11788749|ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function oligopeptide transporter activity|GO:0015198|11788749|ISS  go_function oligopeptide transporter activity|GO:0015198||ISS  product ATOPT9 (ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 9); oligopeptide transporter  note ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 9 (ATOPT9); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Tetrapeptide transporter, OPT1/isp4 (InterPro:IPR004648), Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: OPT6 (OLIGOPEPTIDE TRANSPORTER 1); oligopeptide transporter (TAIR:AT4G27730.1); Has 740 Blast hits to 727 proteins in 79 species: Archae - 0; Bacteria - 17; Metazoa - 7; Fungi - 537; Plants - 175; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G53510.1p  transcript_id AT5G53510.1  protein_id AT5G53510.1p  transcript_id AT5G53510.1  
At5g53520	chr5:021743450	0.0	W/21743450-21743923,21744014-21744111,21744190-21745021,21745110-21745292,21745367-21745981	AT5G53520.1  CDS  gene_syn ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 8, ATOPT8, MNC6.6, MNC6_6, OLIGOPEPTIDE TRANSPORTER 8, OPT8  gene ATOPT8  function oligopeptide transporter  go_component membrane|GO:0016020|11788749|ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function oligopeptide transporter activity|GO:0015198|11788749|ISS  go_function oligopeptide transporter activity|GO:0015198||ISS  product ATOPT8 (ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 8); oligopeptide transporter  note ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 8 (ATOPT8); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Tetrapeptide transporter, OPT1/isp4 (InterPro:IPR004648), Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: OPT6 (OLIGOPEPTIDE TRANSPORTER 1); oligopeptide transporter (TAIR:AT4G27730.1); Has 713 Blast hits to 700 proteins in 75 species: Archae - 0; Bacteria - 18; Metazoa - 0; Fungi - 532; Plants - 159; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G53520.1p  transcript_id AT5G53520.1  protein_id AT5G53520.1p  transcript_id AT5G53520.1  
At5g53530	chr5:021748154	0.0	C/21748154-21748156,21747979-21748053,21747806-21747880,21747643-21747715,21747501-21747545,21747292-21747403,21747127-21747193,21746993-21747037,21746803-21746858,21746540-21746715,21746275-21746456	AT5G53530.1  CDS  gene_syn MNC6.7, MNC6_7, VACUOLAR PROTEIN SORTING 26A, VPS26A  gene VPS26A  function Homolog of yeast retromer subunit VPS26. Part of a retromer-like protein complex involved in endosome to lysosome protein transport.  go_component multivesicular body|GO:0005771|16582012|IDA  go_component microsome|GO:0005792|16582012|IDA  go_component membrane|GO:0016020|16582012|IDA  go_component retromer complex|GO:0030904|16582012|IDA  go_component retromer complex|GO:0030904|16582012|ISS  go_process intracellular protein transport|GO:0006886||ISS  go_process endosome to lysosome transport|GO:0008333|16582012|ISS  go_process retrograde transport, endosome to Golgi|GO:0042147||ISS  go_function molecular_function|GO:0003674||ND  product VPS26A (VACUOLAR PROTEIN SORTING 26A)  note VACUOLAR PROTEIN SORTING 26A (VPS26A); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport, endosome to lysosome transport, retrograde transport, endosome to Golgi; LOCATED IN: retromer complex, microsome, membrane, multivesicular body; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 26 (InterPro:IPR005377); BEST Arabidopsis thaliana protein match is: VPS26B (VACUOLAR PROTEIN SORTING 26B) (TAIR:AT4G27690.1); Has 572 Blast hits to 564 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 297; Fungi - 95; Plants - 61; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT5G53530.1p  transcript_id AT5G53530.1  protein_id AT5G53530.1p  transcript_id AT5G53530.1  
At5g53540	chr5:021750893	0.0	C/21750893-21751099,21750509-21750809,21750283-21750441,21749904-21750199,21749561-21749809	AT5G53540.1  CDS  gene_syn MNC6.8, MNC6_8  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP-dependent peptidase activity|GO:0004176||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATPase activity|GO:0016887||ISS  product MSP1 protein, putative / intramitochondrial sorting protein, putative  note MSP1 protein, putative / intramitochondrial sorting protein, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase S16, Lon protease, C-terminal region (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: MSP1 protein, putative / intramitochondrial sorting protein, putative (TAIR:AT4G27680.1); Has 21950 Blast hits to 20239 proteins in 1757 species: Archae - 878; Bacteria - 6604; Metazoa - 4050; Fungi - 2359; Plants - 1467; Viruses - 23; Other Eukaryotes - 6569 (source: NCBI BLink).  protein_id AT5G53540.1p  transcript_id AT5G53540.1  protein_id AT5G53540.1p  transcript_id AT5G53540.1  
At5g53550	chr5:021756081	0.0	W/21756081-21756453,21756549-21756724,21756959-21757056,21757146-21757280,21757365-21757554,21757643-21757760,21757839-21758776	AT5G53550.1  CDS  gene_syn ATYSL3, MNC6.9, MNC6_9, YELLOW STRIPE LIKE 3, YSL3  gene YSL3  go_process oligopeptide transport|GO:0006857||ISS  go_process response to nematode|GO:0009624|16478044|IEP  go_function oligopeptide transporter activity|GO:0015198||ISS  product YSL3 (YELLOW STRIPE LIKE 3); oligopeptide transporter  note YELLOW STRIPE LIKE 3 (YSL3); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport, response to nematode; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: YSL2 (YELLOW STRIPE LIKE 2); oligopeptide transporter (TAIR:AT5G24380.1); Has 1004 Blast hits to 976 proteins in 282 species: Archae - 12; Bacteria - 429; Metazoa - 0; Fungi - 170; Plants - 244; Viruses - 1; Other Eukaryotes - 148 (source: NCBI BLink).  protein_id AT5G53550.1p  transcript_id AT5G53550.1  protein_id AT5G53550.1p  transcript_id AT5G53550.1  
At5g53560	chr5:021759628	0.0	W/21759628-21759714,21759948-21760014,21760103-21760353	AT5G53560.1  CDS  gene_syn ARABIDOPSIS CYTOCHROME B5 ISOFORM E, ATB5-A, ATCB5-E, B5  2, CB5-E, CYTOCHROME B5 ISOFORM E  gene CB5-E  function Encodes a cytochrome b5 isoform that can be reduced by AtCBR, a cytochrome b5 reductase.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum membrane|GO:0005789|9880378|NAS  go_function heme binding|GO:0020037|17322552|ISS  product CB5-E (CYTOCHROME B5 ISOFORM E); heme binding  note CYTOCHROME B5 ISOFORM E (CB5-E); FUNCTIONS IN: heme binding; LOCATED IN: chloroplast thylakoid membrane, endoplasmic reticulum, plasma membrane, endoplasmic reticulum membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b5, heme-binding site (InterPro:IPR018506), Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: CB5-B (CYTOCHROME B5 ISOFORM B); heme binding (TAIR:AT2G32720.1); Has 3004 Blast hits to 2970 proteins in 386 species: Archae - 1; Bacteria - 19; Metazoa - 839; Fungi - 1095; Plants - 550; Viruses - 3; Other Eukaryotes - 497 (source: NCBI BLink).  protein_id AT5G53560.1p  transcript_id AT5G53560.1  protein_id AT5G53560.1p  transcript_id AT5G53560.1  
At5g53570	chr5:021762841	0.0	C/21762841-21763082,21762465-21762597,21762327-21762376,21762185-21762238,21760924-21762097	AT5G53570.1  CDS  gene_syn MNC6.11, MNC6_11  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of Rab GTPase activity|GO:0032313||IEA  go_function RAB GTPase activator activity|GO:0005097||IEA  product RabGAP/TBC domain-containing protein  note RabGAP/TBC domain-containing protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: RAB GTPase activator (TAIR:AT3G49350.1); Has 20929 Blast hits to 5376 proteins in 313 species: Archae - 4; Bacteria - 1057; Metazoa - 5852; Fungi - 1888; Plants - 381; Viruses - 55; Other Eukaryotes - 11692 (source: NCBI BLink).  protein_id AT5G53570.1p  transcript_id AT5G53570.1  protein_id AT5G53570.1p  transcript_id AT5G53570.1  
At5g53570	chr5:021763206	0.0	C/21763206-21763280,21762841-21763088,21762465-21762597,21762327-21762376,21762185-21762238,21760924-21762097	AT5G53570.2  CDS  gene_syn MNC6.11, MNC6_11  go_component intracellular|GO:0005622||IEA  go_process regulation of Rab GTPase activity|GO:0032313||IEA  go_function RAB GTPase activator activity|GO:0005097||IEA  product RabGAP/TBC domain-containing protein  note RabGAP/TBC domain-containing protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: RAB GTPase activator (TAIR:AT3G49350.1).  protein_id AT5G53570.2p  transcript_id AT5G53570.2  protein_id AT5G53570.2p  transcript_id AT5G53570.2  
At5g53580	chr5:021766803	0.0	C/21766803-21766919,21766490-21766718,21766215-21766308,21765999-21766122,21765656-21765909,21765478-21765571,21765215-21765400	AT5G53580.1  CDS  gene_syn MNC6.12, MNC6_12  go_component chloroplast|GO:0009507|18431481|IDA  go_process oxidation reduction|GO:0055114||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function aldo-keto reductase activity|GO:0004033||ISS  product aldo/keto reductase family protein  note aldo/keto reductase family protein; FUNCTIONS IN: oxidoreductase activity, aldo-keto reductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Aldo/keto reductase, conserved site (InterPro:IPR018170); BEST Arabidopsis thaliana protein match is: aldo/keto reductase family protein (TAIR:AT1G06690.1); Has 17681 Blast hits to 17668 proteins in 1454 species: Archae - 262; Bacteria - 9536; Metazoa - 1802; Fungi - 1372; Plants - 771; Viruses - 0; Other Eukaryotes - 3938 (source: NCBI BLink).  protein_id AT5G53580.1p  transcript_id AT5G53580.1  protein_id AT5G53580.1p  transcript_id AT5G53580.1  
At5g53588	chr5:021771868	0.0	W/21771868-21771972	AT5G53588.1  CDS  gene_syn CPuORF50, Conserved peptide upstream open reading frame 50  gene CPuORF50  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF50 represents a conserved upstream opening reading frame relative to major ORF AT5G53590.1  product CPuORF50 (Conserved peptide upstream open reading frame 50)  note Conserved peptide upstream open reading frame 50 (CPuORF50); Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G53588.1p  transcript_id AT5G53588.1  protein_id AT5G53588.1p  transcript_id AT5G53588.1  
At5g53590	chr5:021772107	0.0	W/21772107-21772535	AT5G53590.1  CDS  gene_syn MNC6.13, MNC6_13  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT2G46690.1); Has 708 Blast hits to 691 proteins in 38 species: Archae - 0; Bacteria - 2; Metazoa - 32; Fungi - 11; Plants - 642; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT5G53590.1p  transcript_id AT5G53590.1  protein_id AT5G53590.1p  transcript_id AT5G53590.1  
At5g53592	chr5:021774476	0.0	W/21774476-21774811	AT5G53592.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23955.1); Has 107 Blast hits to 106 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G53592.1p  transcript_id AT5G53592.1  protein_id AT5G53592.1p  transcript_id AT5G53592.1  
At5g53600	chr5:021777107	0.0	W/21777107-21777442	AT5G53600.1  CDS  gene_syn MNC6.14, MNC6_14  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycosyl hydrolase family protein 17  note glycosyl hydrolase family protein 17; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family protein 17 (TAIR:AT5G53610.1); Has 733 Blast hits to 697 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 733; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G53600.1p  transcript_id AT5G53600.1  protein_id AT5G53600.1p  transcript_id AT5G53600.1  
At5g53610	chr5:021779061	0.0	W/21779061-21779393	AT5G53610.1  CDS  gene_syn MNC6.15, MNC6_15  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycosyl hydrolase family protein 17  note glycosyl hydrolase family protein 17; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family protein 17 (TAIR:AT5G53600.1); Has 730 Blast hits to 694 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 730; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G53610.1p  transcript_id AT5G53610.1  protein_id AT5G53610.1p  transcript_id AT5G53610.1  
At5g53620	chr5:021781217	0.0	W/21781217-21781342,21781579-21781629,21781722-21781922,21782024-21782122,21782205-21782260,21782481-21782592,21782732-21782911,21783004-21783249,21783651-21783824,21783900-21784067,21784144-21784269,21784380-21784562,21784657-21784755,21784834-21785061	AT5G53620.1  CDS  gene_syn MNC6.16, MNC6_16  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 24768 Blast hits to 16126 proteins in 919 species: Archae - 127; Bacteria - 1854; Metazoa - 13180; Fungi - 1596; Plants - 564; Viruses - 82; Other Eukaryotes - 7365 (source: NCBI BLink).  protein_id AT5G53620.1p  transcript_id AT5G53620.1  protein_id AT5G53620.1p  transcript_id AT5G53620.1  
At5g53620	chr5:021781217	0.0	W/21781217-21781342,21781579-21781629,21781722-21781922,21782024-21782122,21782205-21782260,21782481-21782592,21782732-21782911,21783004-21783249,21783651-21783824,21783900-21784067,21784144-21784269,21784380-21784562,21784657-21784755,21784834-21785061	AT5G53620.2  CDS  gene_syn MNC6.16, MNC6_16  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 24768 Blast hits to 16126 proteins in 919 species: Archae - 127; Bacteria - 1854; Metazoa - 13180; Fungi - 1596; Plants - 564; Viruses - 82; Other Eukaryotes - 7365 (source: NCBI BLink).  protein_id AT5G53620.2p  transcript_id AT5G53620.2  protein_id AT5G53620.2p  transcript_id AT5G53620.2  
At5g53620	chr5:021781217	0.0	W/21781217-21781342,21781579-21781629,21781722-21781922,21782024-21782122,21782205-21782260,21782481-21782592,21782732-21782911,21783004-21783249,21783651-21783824,21783900-21784067,21784144-21784269,21784380-21784562,21784657-21784755,21784834-21785061	AT5G53620.3  CDS  gene_syn MNC6.16, MNC6_16  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 24768 Blast hits to 16126 proteins in 919 species: Archae - 127; Bacteria - 1854; Metazoa - 13180; Fungi - 1596; Plants - 564; Viruses - 82; Other Eukaryotes - 7365 (source: NCBI BLink).  protein_id AT5G53620.3p  transcript_id AT5G53620.3  protein_id AT5G53620.3p  transcript_id AT5G53620.3  
At5g53640	chr5:021790064	0.0	C/21790064-21790690,21788938-21789411,21788706-21788855,21788332-21788613,21786569-21787384,21786334-21786474,21785999-21786262	AT5G53640.1  CDS  gene_syn MNC6.18, MNC6_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G25850.1); Has 1992 Blast hits to 1237 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1991; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G53640.1p  transcript_id AT5G53640.1  protein_id AT5G53640.1p  transcript_id AT5G53640.1  
At5g53650	chr5:021791265	0.0	W/21791265-21791387,21792147-21792242	AT5G53650.1  CDS  gene_syn MNC6.19, MNC6_19  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 20 Blast hits to 20 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G53650.1p  transcript_id AT5G53650.1  protein_id AT5G53650.1p  transcript_id AT5G53650.1  
At5g53660	chr5:021794636	0.0	W/21794636-21794771,21794853-21795318,21795434-21795929	AT5G53660.1  CDS  gene_syn AtGRF7, GROWTH-REGULATING FACTOR 7, MNC6.20, MNC6_20  gene AtGRF7  function Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower.  go_component nucleus|GO:0005634|12974814|ISS  go_process response to red light|GO:0010114|17076805|IEP  go_process response to far red light|GO:0010218|17076805|IEP  go_process leaf development|GO:0048366|12974814|TAS  go_function transcription activator activity|GO:0016563|12974814|ISS  product AtGRF7 (GROWTH-REGULATING FACTOR 7); transcription activator  note GROWTH-REGULATING FACTOR 7 (AtGRF7); FUNCTIONS IN: transcription activator activity; INVOLVED IN: response to red light, response to far red light, leaf development; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine-Leucine-Glutamine, QLQ (InterPro:IPR014978), WRC (InterPro:IPR014977); BEST Arabidopsis thaliana protein match is: AtGRF2 (GROWTHREGULATING FACTOR 2); transcription activator (TAIR:AT4G37740.1); Has 336 Blast hits to 331 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 330; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G53660.1p  transcript_id AT5G53660.1  protein_id AT5G53660.1p  transcript_id AT5G53660.1  
At5g53670	chr5:021796997	0.0	W/21796997-21797731	AT5G53670.1  CDS  gene_syn MGN6.1, MGN6_1  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; Has 178 Blast hits to 178 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 178; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G53670.1p  transcript_id AT5G53670.1  protein_id AT5G53670.1p  transcript_id AT5G53670.1  
At5g53680	chr5:021798382	0.0	W/21798382-21798555,21798629-21798783,21798929-21799109	AT5G53680.1  CDS  gene_syn MGN6.2, MGN6_2  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, petiole, leaf; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nucleic acid binding / nucleotide binding (TAIR:AT5G11412.1); Has 9863 Blast hits to 7913 proteins in 465 species: Archae - 0; Bacteria - 559; Metazoa - 5572; Fungi - 880; Plants - 1856; Viruses - 0; Other Eukaryotes - 996 (source: NCBI BLink).  protein_id AT5G53680.1p  transcript_id AT5G53680.1  protein_id AT5G53680.1p  transcript_id AT5G53680.1  
At5g53690	chr5:021800487	0.0	W/21800487-21800717	AT5G53690.1  CDS  gene_syn MGN6.4, MGN6_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 38 Blast hits to 38 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G53690.1p  transcript_id AT5G53690.1  protein_id AT5G53690.1p  transcript_id AT5G53690.1  
At5g53700	chr5:021801221	0.0	W/21801221-21801241,21801388-21801422,21801496-21801639,21801722-21801889,21801985-21802125,21802223-21802371,21802449-21802546	AT5G53700.1  CDS  gene_syn MGN6.5, MGN6_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: nucleic acid binding / nucleotide binding (TAIR:AT5G03480.1); Has 74 Blast hits to 54 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G53700.1p  transcript_id AT5G53700.1  protein_id AT5G53700.1p  transcript_id AT5G53700.1  
At5g53710	chr5:021805409	0.0	C/21805409-21805753	AT5G53710.1  CDS  gene_syn MGN6.6, MGN6_6  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G53710.1p  transcript_id AT5G53710.1  protein_id AT5G53710.1p  transcript_id AT5G53710.1  
At5g53720	chr5:021806622	0.0	W/21806622-21806783,21806872-21807012	AT5G53720.1  CDS  gene_syn MGN6.7, MGN6_7  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT5G53680.1); Has 8094 Blast hits to 6214 proteins in 374 species: Archae - 2; Bacteria - 274; Metazoa - 4851; Fungi - 707; Plants - 1625; Viruses - 0; Other Eukaryotes - 635 (source: NCBI BLink).  protein_id AT5G53720.1p  transcript_id AT5G53720.1  protein_id AT5G53720.1p  transcript_id AT5G53720.1  
At5g53730	chr5:021808072	0.0	C/21808072-21808713	AT5G53730.1  CDS  gene_syn MGN6.8, MGN6_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product harpin-induced family protein / HIN1 family protein / harpin-responsive family protein  note harpin-induced family protein / HIN1 family protein / harpin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: NHL1 (TAIR:AT3G11660.1); Has 587 Blast hits to 586 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 587; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G53730.1p  transcript_id AT5G53730.1  protein_id AT5G53730.1p  transcript_id AT5G53730.1  
At5g53740	chr5:021811633	0.0	W/21811633-21811663,21811833-21811943,21812430-21812495,21812675-21812783,21812924-21813021,21813467-21813599,21813977-21814170,21814823-21814908	AT5G53740.1  CDS  gene_syn MGN6.10, MGN6_10  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G53905.1); Has 25 Blast hits to 21 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G53740.1p  transcript_id AT5G53740.1  protein_id AT5G53740.1p  transcript_id AT5G53740.1  
At5g53742	chr5:021813671	0.0	W/21813671-21814018	AT5G53742.1  CDS  function Encodes a ECA1 gametogenesis related family protein  product unknown protein  note BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54062.1); Has 80 Blast hits to 69 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G53742.1p  transcript_id AT5G53742.1  protein_id AT5G53742.1p  transcript_id AT5G53742.1  
At5g53750	chr5:021817416	0.0	W/21817416-21817756,21817838-21818723	AT5G53750.1  CDS  gene_syn MGN6.11, MGN6_11  go_component cellular_component|GO:0005575||ND  go_process response to wounding|GO:0009611|17675405|IEP  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to wounding; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein (TAIR:AT4G27460.1); Has 79 Blast hits to 78 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G53750.1p  transcript_id AT5G53750.1  protein_id AT5G53750.1p  transcript_id AT5G53750.1  
At5g53760	chr5:021823055	0.0	W/21823055-21823201,21823279-21823336,21823441-21823676,21823764-21823880,21824030-21824090,21824263-21824357,21824446-21824520,21824647-21824732,21824884-21824933,21825057-21825097,21825189-21825359,21825452-21825487,21825581-21825648,21825732-21825792,21825870-21826289	AT5G53760.1  CDS  gene_syn ATMLO11, MGN6.12, MGN6_12, MILDEW RESISTANCE LOCUS O 11, MLO11  gene MLO11  function A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO11 belongs to the clade I, with AtMLO4 and AtMLO14. The gene is expressed during early seedling growth (in primary root), in root tips and lateral root primordia, and in very young leaves, and in flowers and fruit abscission zone, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).  go_component integral to membrane|GO:0016021||IEA  go_process cell death|GO:0008219||IEA  go_component plasma membrane|GO:0005886||ISS  go_process defense response|GO:0006952||ISS  go_process cell death|GO:0008219||ISS  go_function calmodulin binding|GO:0005516||ISS  product MLO11 (MILDEW RESISTANCE LOCUS O 11); calmodulin binding  note MILDEW RESISTANCE LOCUS O 11 (MLO11); FUNCTIONS IN: calmodulin binding; INVOLVED IN: cell death, defense response; LOCATED IN: integral to membrane, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326); BEST Arabidopsis thaliana protein match is: MLO14 (MILDEW RESISTANCE LOCUS O 14); calmodulin binding (TAIR:AT1G26700.1); Has 292 Blast hits to 286 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 286; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G53760.1p  transcript_id AT5G53760.1  protein_id AT5G53760.1p  transcript_id AT5G53760.1  
At5g53760	chr5:021823055	0.0	W/21823055-21823201,21823279-21823336,21823441-21823676,21823764-21823880,21824030-21824090,21824263-21824357,21824446-21824520,21824647-21824732,21824884-21824933,21825057-21825097,21825189-21825359,21825452-21825487,21825581-21825648,21825732-21825792,21825870-21826289	AT5G53760.2  CDS  gene_syn ATMLO11, MGN6.12, MGN6_12, MILDEW RESISTANCE LOCUS O 11, MLO11  gene MLO11  function A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO11 belongs to the clade I, with AtMLO4 and AtMLO14. The gene is expressed during early seedling growth (in primary root), in root tips and lateral root primordia, and in very young leaves, and in flowers and fruit abscission zone, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).  go_component integral to membrane|GO:0016021||IEA  go_process cell death|GO:0008219||IEA  go_component plasma membrane|GO:0005886||ISS  go_process defense response|GO:0006952||ISS  go_process cell death|GO:0008219||ISS  go_function calmodulin binding|GO:0005516||ISS  product MLO11 (MILDEW RESISTANCE LOCUS O 11); calmodulin binding  note MILDEW RESISTANCE LOCUS O 11 (MLO11); FUNCTIONS IN: calmodulin binding; INVOLVED IN: cell death, defense response; LOCATED IN: integral to membrane, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326); BEST Arabidopsis thaliana protein match is: MLO14 (MILDEW RESISTANCE LOCUS O 14); calmodulin binding (TAIR:AT1G26700.1); Has 292 Blast hits to 286 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 286; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G53760.2p  transcript_id AT5G53760.2  protein_id AT5G53760.2p  transcript_id AT5G53760.2  
At5g53770	chr5:021826733	0.0	W/21826733-21827102,21827329-21827441,21827535-21827591,21827711-21827806,21827884-21827954,21828248-21828290,21828422-21828502,21828596-21828655,21828756-21828806,21828890-21828987,21829121-21829169,21829265-21829309,21829400-21829858	AT5G53770.1  CDS  gene_syn MGN6.13, MGN6_13  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product nucleotidyltransferase family protein  note nucleotidyltransferase family protein; FUNCTIONS IN: nucleic acid binding, nucleotidyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Nucleotidyltransferase (InterPro:IPR002934), PAP/25A-associated (InterPro:IPR002058); BEST Arabidopsis thaliana protein match is: MEE44 (maternal effect embryo arrest 44); nucleotidyltransferase (TAIR:AT4G00060.1); Has 1327 Blast hits to 1209 proteins in 161 species: Archae - 0; Bacteria - 1; Metazoa - 656; Fungi - 239; Plants - 107; Viruses - 0; Other Eukaryotes - 324 (source: NCBI BLink).  protein_id AT5G53770.1p  transcript_id AT5G53770.1  protein_id AT5G53770.1p  transcript_id AT5G53770.1  
At5g53775	chr5:021831518	0.0	C/21831518-21836800	AT5G53775.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 4.4e-39 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)  
At5g53780	chr5:021841922	0.0	C/21841922-21841977,21840214-21840963,21839818-21840142	AT5G53780.1  CDS  gene_syn MGN6.16, MGN6_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G53790.1); Has 142 Blast hits to 140 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 142; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G53780.1p  transcript_id AT5G53780.1  protein_id AT5G53780.1p  transcript_id AT5G53780.1  
At5g53790	chr5:021843501	0.0	W/21843501-21843536,21843651-21844372,21844533-21844828,21845173-21845261	AT5G53790.1  CDS  gene_syn MGN6.17, MGN6_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G53780.1); Has 118 Blast hits to 115 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 118; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G53790.1p  transcript_id AT5G53790.1  protein_id AT5G53790.1p  transcript_id AT5G53790.1  
At5g53800	chr5:021848180	0.0	W/21848180-21848784,21848893-21848938,21849047-21849096,21849196-21849237,21849327-21849440,21849538-21849616,21849706-21849777,21849888-21849935	AT5G53800.1  CDS  gene_syn MGN6.19, MGN6_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 111817 Blast hits to 46610 proteins in 1627 species: Archae - 124; Bacteria - 12430; Metazoa - 54850; Fungi - 11384; Plants - 4788; Viruses - 714; Other Eukaryotes - 27527 (source: NCBI BLink).  protein_id AT5G53800.1p  transcript_id AT5G53800.1  protein_id AT5G53800.1p  transcript_id AT5G53800.1  
At5g53815	chr5:021851784	0.0	W/21851784-21852218	AT5G53815.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 6.6e-26 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At5g53810	chr5:021852302	0.0	C/21852302-21852762,21851096-21851406,21850719-21850783,21850329-21850628	AT5G53810.1  CDS  gene_syn MGN6.20, MGN6_20  go_function methyltransferase activity|GO:0008168||IEA  go_function O-methyltransferase activity|GO:0008171||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_component cytosol|GO:0005829|9484457|TAS  product O-methyltransferase, putative  note O-methyltransferase, putative; FUNCTIONS IN: methyltransferase activity, protein dimerization activity, O-methyltransferase activity; LOCATED IN: cytosol; EXPRESSED IN: carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family 2 protein (TAIR:AT1G77530.1); Has 2032 Blast hits to 2030 proteins in 410 species: Archae - 0; Bacteria - 537; Metazoa - 80; Fungi - 404; Plants - 924; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).  protein_id AT5G53810.1p  transcript_id AT5G53810.1  protein_id AT5G53810.1p  transcript_id AT5G53810.1  
At5g53820	chr5:021853475	0.0	W/21853475-21853534,21853631-21853699,21853792-21853866	AT5G53820.1  CDS  gene_syn MGN6.21, MGN6_21  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38760.1); Has 76 Blast hits to 76 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G53820.1p  transcript_id AT5G53820.1  protein_id AT5G53820.1p  transcript_id AT5G53820.1  
At5g53830	chr5:021857057	0.0	W/21857057-21857788	AT5G53830.1  CDS  gene_syn MGN6.22, MGN6_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product VQ motif-containing protein  note VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT3G15300.1); Has 86 Blast hits to 86 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 4; Plants - 68; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G53830.1p  transcript_id AT5G53830.1  protein_id AT5G53830.1p  transcript_id AT5G53830.1  
At5g53840	chr5:021859779	0.0	C/21859779-21860672,21859545-21859685,21859148-21859447	AT5G53840.1  CDS  gene_syn K6O8.1, K6O8_1  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11077244|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product F-box family protein (FBL13)  note F-box family protein (FBL13); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G51370.1); Has 1476 Blast hits to 1443 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1476; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G53840.1p  transcript_id AT5G53840.1  protein_id AT5G53840.1p  transcript_id AT5G53840.1  
At5g53850	chr5:021864610	0.0	C/21864610-21864817,21864089-21864225,21863033-21863128,21862818-21862937,21862635-21862724,21862364-21862507,21862131-21862286,21861896-21862045,21861707-21861808,21861530-21861639,21861329-21861447,21861155-21861246	AT5G53850.2  CDS  gene_syn K19P17.1, K19P17_1  go_component chloroplast|GO:0009507|18431481|IDA  go_process metabolic process|GO:0008152||IEA  go_process methionine salvage|GO:0019509||IEA  go_function catalytic activity|GO:0003824||IEA  go_function phosphoglycolate phosphatase activity|GO:0008967||IEA  go_function acireductone synthase activity|GO:0043874||IEA  go_function metal ion binding|GO:0046872||IEA  go_function hydrolase activity|GO:0016787||ISS  product haloacid dehalogenase-like hydrolase family protein  note haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity, acireductone synthase activity, catalytic activity, phosphoglycolate phosphatase activity, metal ion binding; INVOLVED IN: methionine salvage, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), 2,3-diketo-5-methylthio-1-phosphopentane phosphatase (InterPro:IPR010041), Class II aldolase/adducin, N-terminal (InterPro:IPR001303), HAD-superfamily hydrolase, subfamily IA, variant 1 (InterPro:IPR006439), Methylthioribulose-1-phosphate dehydratase (InterPro:IPR017714); Has 1701 Blast hits to 1701 proteins in 496 species: Archae - 17; Bacteria - 1130; Metazoa - 229; Fungi - 146; Plants - 37; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink).  protein_id AT5G53850.2p  transcript_id AT5G53850.2  protein_id AT5G53850.2p  transcript_id AT5G53850.2  
At5g53850	chr5:021864610	0.0	C/21864610-21864817,21864089-21864225,21863033-21863128,21862818-21862937,21862635-21862724,21862364-21862507,21862131-21862286,21861896-21862045,21861707-21861808,21861617-21861622	AT5G53850.1  CDS  gene_syn K19P17.1, K19P17_1  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_function metal ion binding|GO:0046872||IEA  go_function hydrolase activity|GO:0016787||ISS  product haloacid dehalogenase-like hydrolase family protein  note haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity, metal ion binding; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Class II aldolase/adducin, N-terminal (InterPro:IPR001303), Methylthioribulose-1-phosphate dehydratase (InterPro:IPR017714); Has 1678 Blast hits to 1678 proteins in 494 species: Archae - 17; Bacteria - 1130; Metazoa - 227; Fungi - 144; Plants - 37; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).  protein_id AT5G53850.1p  transcript_id AT5G53850.1  protein_id AT5G53850.1p  transcript_id AT5G53850.1  
At5g53850	chr5:021864610	0.0	C/21864610-21864817,21864089-21864225,21863653-21863700,21863033-21863128,21862818-21862937,21862635-21862724,21862364-21862507,21862131-21862286,21861896-21862045,21861707-21861808,21861617-21861622	AT5G53850.3  CDS  gene_syn K19P17.1, K19P17_1  go_component chloroplast|GO:0009507|18431481|IDA  go_function metal ion binding|GO:0046872||IEA  go_function hydrolase activity|GO:0016787||ISS  product haloacid dehalogenase-like hydrolase family protein  note haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity, metal ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Class II aldolase/adducin, N-terminal (InterPro:IPR001303), Methylthioribulose-1-phosphate dehydratase (InterPro:IPR017714); Has 1291 Blast hits to 1291 proteins in 358 species: Archae - 3; Bacteria - 777; Metazoa - 227; Fungi - 144; Plants - 37; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).  protein_id AT5G53850.3p  transcript_id AT5G53850.3  protein_id AT5G53850.3p  transcript_id AT5G53850.3  
At5g53860	chr5:021865353	0.0	W/21865353-21865577,21865932-21865996,21866133-21866231,21866433-21866565,21866783-21866842,21867010-21867069,21867159-21867281,21867641-21867712,21867824-21867919,21868374-21868394,21868544-21868576	AT5G53860.3  CDS  gene_syn K6O8.3, emb2737, embryo defective 2737  gene emb2737  go_component chloroplast|GO:0009507|18431481|IDA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product emb2737 (embryo defective 2737)  note embryo defective 2737 (emb2737); INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 32 Blast hits to 25 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G53860.3p  transcript_id AT5G53860.3  protein_id AT5G53860.3p  transcript_id AT5G53860.3  
At5g53860	chr5:021865353	0.0	W/21865353-21865577,21865932-21865996,21866133-21866231,21866433-21866565,21866783-21866842,21867010-21867069,21867159-21867281,21867641-21867712,21867824-21867961,21868048-21868203,21868290-21868394,21868544-21868576	AT5G53860.2  CDS  gene_syn K6O8.3, emb2737, embryo defective 2737  gene emb2737  go_component chloroplast|GO:0009507|18431481|IDA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product emb2737 (embryo defective 2737)  note embryo defective 2737 (emb2737); INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 25 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G53860.2p  transcript_id AT5G53860.2  protein_id AT5G53860.2p  transcript_id AT5G53860.2  
At5g53860	chr5:021865353	0.0	W/21865353-21865577,21865932-21865996,21866133-21866231,21866433-21866565,21867010-21867069,21867159-21867281,21867641-21867712,21867824-21867961,21868048-21868203,21868290-21868394,21868544-21868576	AT5G53860.1  CDS  gene_syn K6O8.3, emb2737, embryo defective 2737  gene emb2737  go_component chloroplast|GO:0009507|18431481|IDA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product emb2737 (embryo defective 2737)  note embryo defective 2737 (emb2737); INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 13 Blast hits to 12 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G53860.1p  transcript_id AT5G53860.1  protein_id AT5G53860.1p  transcript_id AT5G53860.1  
At5g53870	chr5:021871045	0.0	C/21871045-21871228,21870033-21870961	AT5G53870.1  CDS  gene_syn K19P17.3, K19P17_3  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function copper ion binding|GO:0005507||ISS  product plastocyanin-like domain-containing protein  note plastocyanin-like domain-containing protein; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: plastocyanin-like domain-containing protein (TAIR:AT4G27520.1); Has 168884 Blast hits to 72384 proteins in 1909 species: Archae - 291; Bacteria - 24836; Metazoa - 65984; Fungi - 32024; Plants - 14085; Viruses - 4180; Other Eukaryotes - 27484 (source: NCBI BLink).  protein_id AT5G53870.1p  transcript_id AT5G53870.1  protein_id AT5G53870.1p  transcript_id AT5G53870.1  
At5g53880	chr5:021872995	0.0	C/21872995-21873195	AT5G53880.1  CDS  gene_syn K19P17.4, K19P17_4  go_component mitochondrion|GO:0005739|15276431|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1379 Blast hits to 641 proteins in 104 species: Archae - 20; Bacteria - 31; Metazoa - 673; Fungi - 150; Plants - 69; Viruses - 10; Other Eukaryotes - 426 (source: NCBI BLink).  protein_id AT5G53880.1p  transcript_id AT5G53880.1  protein_id AT5G53880.1p  transcript_id AT5G53880.1  
At5g53890	chr5:021877235	0.0	W/21877235-21880345	AT5G53890.1  CDS  gene_syn K19P17.5, K19P17_5  function Encodes a leucine-rich repeat receptor kinase (LRR-RK) involved in the perception of phytosulfokine (PSK), which is a 5-aa tyrosine-sulfated peptide that primarily promotes cellular proliferation.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_process response to wounding|GO:0009611|17989228|IGI  go_function peptide receptor activity|GO:0001653|17989228|IMP  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: peptide receptor activity, protein serine/threonine kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation, response to wounding; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: PSKR1 (PHYTOSULFOKIN RECEPTOR 1); ATP binding / peptide receptor/ protein serine/threonine kinase (TAIR:AT2G02220.1); Has 152170 Blast hits to 100156 proteins in 2904 species: Archae - 82; Bacteria - 12312; Metazoa - 64912; Fungi - 6945; Plants - 48162; Viruses - 387; Other Eukaryotes - 19370 (source: NCBI BLink).  protein_id AT5G53890.1p  transcript_id AT5G53890.1  protein_id AT5G53890.1p  transcript_id AT5G53890.1  
At5g53895	chr5:021880626	0.0	W/21880626-21880733,21880835-21881116	AT5G53895.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27530.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G53895.1p  transcript_id AT5G53895.1  protein_id AT5G53895.1p  transcript_id AT5G53895.1  
At5g53900	chr5:021882329	0.0	C/21882329-21882430,21882191-21882232,21882062-21882118,21881375-21881971	AT5G53900.1  CDS  gene_syn K19P17.6, K19P17_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15240.2); Has 76 Blast hits to 76 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G53900.1p  transcript_id AT5G53900.1  protein_id AT5G53900.1p  transcript_id AT5G53900.1  
At5g53900	chr5:021882997	0.0	C/21882997-21883133,21882857-21882907,21882591-21882734,21882329-21882434,21882191-21882232,21882062-21882118,21881375-21881971	AT5G53900.2  CDS  gene_syn K19P17.6, K19P17_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15240.2); Has 107 Blast hits to 107 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G53900.2p  transcript_id AT5G53900.2  protein_id AT5G53900.2p  transcript_id AT5G53900.2  
At5g53902	chr5:021887966	0.0	W/21887966-21888667	AT5G53902.1  snoRNA  gene_syn U3 SMALL NUCLEOLAR RNA B, U3B  gene U3B  function U3 small nucleolar RNA  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product U3B (U3 SMALL NUCLEOLAR RNA B); snoRNA  transcript_id AT5G53902.1  
At5g53905	chr5:021888948	0.0	C/21888948-21889254,21888332-21888442,21888148-21888236	AT5G53905.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54062.1); Has 67 Blast hits to 61 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G53905.1p  transcript_id AT5G53905.1  protein_id AT5G53905.1p  transcript_id AT5G53905.1  
At5g53910	chr5:021890643	0.0	W/21890643-21891335	AT5G53910.1  CDS  gene_syn K19P17.8, K19P17_8  go_function ubiquitin-protein ligase activity|GO:0004842|15644464|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative  note (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G18760.1); Has 4139 Blast hits to 4133 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 1559; Fungi - 251; Plants - 1576; Viruses - 8; Other Eukaryotes - 745 (source: NCBI BLink).  protein_id AT5G53910.1p  transcript_id AT5G53910.1  protein_id AT5G53910.1p  transcript_id AT5G53910.1  
At5g53920	chr5:021892124	0.0	W/21892124-21892363,21892443-21892547,21892750-21892890,21893047-21893112,21893323-21893490,21893586-21893867,21893974-21894087	AT5G53920.1  CDS  gene_syn K19P17.9, K19P17_9  go_component cytoplasm|GO:0005737||IEA  go_process protein amino acid methylation|GO:0006479||IEA  go_function protein methyltransferase activity|GO:0008276||IEA  product ribosomal protein L11 methyltransferase-related  note ribosomal protein L11 methyltransferase-related; FUNCTIONS IN: protein methyltransferase activity; INVOLVED IN: protein amino acid methylation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Ribosomal protein L11 methyltransferase (InterPro:IPR004498), Ribosomal L11 methyltransferase (InterPro:IPR010456); Has 3260 Blast hits to 3259 proteins in 1142 species: Archae - 32; Bacteria - 2514; Metazoa - 17; Fungi - 25; Plants - 17; Viruses - 0; Other Eukaryotes - 655 (source: NCBI BLink).  protein_id AT5G53920.1p  transcript_id AT5G53920.1  protein_id AT5G53920.1p  transcript_id AT5G53920.1  
At5g53930	chr5:021896233	0.0	C/21896233-21896283,21894549-21896021,21894387-21894452	AT5G53930.1  CDS  gene_syn K19P17.10, K19P17_10  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G22795.1); Has 30874 Blast hits to 16945 proteins in 616 species: Archae - 11; Bacteria - 1467; Metazoa - 15355; Fungi - 2722; Plants - 1482; Viruses - 159; Other Eukaryotes - 9678 (source: NCBI BLink).  protein_id AT5G53930.1p  transcript_id AT5G53930.1  protein_id AT5G53930.1p  transcript_id AT5G53930.1  
At5g53940	chr5:021898494	0.0	C/21898494-21898589,21897888-21897931,21897472-21897580,21897330-21897385,21897164-21897248	AT5G53940.1  CDS  gene_syn K19P17.11, K19P17_11  go_process biological_process|GO:0008150||ND  product yippee family protein  note yippee family protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Yippee-like protein (InterPro:IPR004910); BEST Arabidopsis thaliana protein match is: yippee family protein (TAIR:AT2G40110.1); Has 696 Blast hits to 696 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 401; Fungi - 132; Plants - 111; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT5G53940.1p  transcript_id AT5G53940.1  protein_id AT5G53940.1p  transcript_id AT5G53940.1  
At5g53950	chr5:021903606	0.0	C/21903606-21903795,21903242-21903525,21901966-21902619	AT5G53950.1  CDS  gene_syn ANAC098, ARABIDOPSIS NAC PROTEIN 098, CUC2, CUP-SHAPED COTYLEDON 2, K19P17.12, K19P17_12  gene CUC2  function Transcriptional activator of the NAC gene family, with CUC1 redundantly required for embryonic apical meristem formation, cotyledon separation and expression of STM. Proper timing of CUC2 expression is required to maintain the phyllotactic pattern initiated in the meristem. CUC2 expression in leaf sinus region is required for serration and the extent of serration is modulated by mir164A mediated repression of CUC2.  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_process primary shoot apical meristem specification|GO:0010072|10079219|IGI  go_process formation of organ boundary|GO:0010160|9212461|IGI  go_process secondary shoot formation|GO:0010223|18346190|IMP  go_process leaf development|GO:0048366|17098808|IMP  go_process regulation of timing of organ formation|GO:0048504|17251269|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12175016|ISS  product CUC2 (CUP-SHAPED COTYLEDON 2); transcription factor  note CUP-SHAPED COTYLEDON 2 (CUC2); FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: CUC1 (CUP-SHAPED COTYLEDON1); transcription factor (TAIR:AT3G15170.1); Has 1716 Blast hits to 1705 proteins in 69 species: Archae - 0; Bacteria - 0; Metazoa - 33; Fungi - 11; Plants - 1659; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT5G53950.1p  transcript_id AT5G53950.1  protein_id AT5G53950.1p  transcript_id AT5G53950.1  
At5g53960	chr5:021907725	0.0	W/21907725-21907872,21907954-21908093,21908171-21908452	AT5G53960.1  CDS  gene_syn K19P17.13, K19P17_13  go_component plasma membrane|GO:0005886|17151019|IDA  go_process DNA metabolic process|GO:0006259||IEA  go_process DNA topological change|GO:0006265||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA topoisomerase (ATP-hydrolyzing) activity|GO:0003918||IEA  go_function ATP binding|GO:0005524||IEA  product ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)  note ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing); FUNCTIONS IN: DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, ATP binding; INVOLVED IN: DNA topological change, DNA metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: DNA topoisomerase, type IIA, subunit A, alpha-helical (InterPro:IPR013757); Has 22 Blast hits to 22 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G53960.1p  transcript_id AT5G53960.1  protein_id AT5G53960.1p  transcript_id AT5G53960.1  
At5g53970	chr5:021910676	0.0	W/21910676-21910920,21911141-21911480,21911562-21911780,21911879-21911938,21912025-21912180,21912263-21912356,21912464-21912594	AT5G53970.1  CDS  gene_syn K19P17.14, K19P17_14  function encodes tyrosine aminotransferase which is strongly induced upon aging and coronatine treatment  go_component cellular_component|GO:0005575||ND  go_process biosynthetic process|GO:0009058||ISS  go_process vitamin E biosynthetic process|GO:0010189|16008101|IEP  go_function L-tyrosine:2-oxoglutarate aminotransferase activity|GO:0004838|16008101|TAS  go_function transaminase activity|GO:0008483||ISS  product aminotransferase, putative  note aminotransferase, putative; FUNCTIONS IN: transaminase activity, L-tyrosine:2-oxoglutarate aminotransferase activity; INVOLVED IN: biosynthetic process, vitamin E biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase, class I and II (InterPro:IPR004839), Tyrosine/nicotianamine aminotransferase (InterPro:IPR005958), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: aminotransferase-related (TAIR:AT5G36160.1); Has 26141 Blast hits to 26138 proteins in 1738 species: Archae - 630; Bacteria - 15788; Metazoa - 691; Fungi - 496; Plants - 905; Viruses - 0; Other Eukaryotes - 7631 (source: NCBI BLink).  protein_id AT5G53970.1p  transcript_id AT5G53970.1  protein_id AT5G53970.1p  transcript_id AT5G53970.1  
At5g53980	chr5:021914087	0.0	W/21914087-21914557	AT5G53980.1  CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 52, ATHB52, K19P17.15, K19P17_15  gene ATHB52  function Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to blue light|GO:0009637|16055682|IEP  go_process response to absence of light|GO:0009646|16055682|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  product ATHB52 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 52); transcription factor  note ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 52 (ATHB52); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to blue light, regulation of transcription, DNA-dependent, response to absence of light; LOCATED IN: nucleus; EXPRESSED IN: flower, root; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3); DNA binding / sequence-specific DNA binding / transcription factor (TAIR:AT5G15150.1); Has 7501 Blast hits to 7477 proteins in 452 species: Archae - 0; Bacteria - 0; Metazoa - 6144; Fungi - 139; Plants - 1064; Viruses - 1; Other Eukaryotes - 153 (source: NCBI BLink).  protein_id AT5G53980.1p  transcript_id AT5G53980.1  protein_id AT5G53980.1p  transcript_id AT5G53980.1  
At5g53990	chr5:021915707	0.0	C/21915707-21917050	AT5G53990.1  CDS  gene_syn K19P17.16, K19P17_16  go_process metabolic process|GO:0008152||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyltransferase family protein  note glycosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: glycosyltransferase family protein (TAIR:AT1G64910.1); Has 3192 Blast hits to 3167 proteins in 202 species: Archae - 0; Bacteria - 32; Metazoa - 574; Fungi - 6; Plants - 2568; Viruses - 2; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G53990.1p  transcript_id AT5G53990.1  protein_id AT5G53990.1p  transcript_id AT5G53990.1  
At5g54000	chr5:021918828	0.0	C/21918828-21919064,21918506-21918753,21918097-21918424,21917776-21918012	AT5G54000.1  CDS  gene_syn K19P17.17, K19P17_17  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT5G20400.1); Has 5558 Blast hits to 5537 proteins in 645 species: Archae - 0; Bacteria - 632; Metazoa - 122; Fungi - 595; Plants - 3055; Viruses - 0; Other Eukaryotes - 1154 (source: NCBI BLink).  protein_id AT5G54000.1p  transcript_id AT5G54000.1  protein_id AT5G54000.1p  transcript_id AT5G54000.1  
At5g54010	chr5:021919819	0.0	C/21919819-21921180	AT5G54010.1  CDS  gene_syn K19P17.18, K19P17_18  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyltransferase family protein  note glycosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: glycosyltransferase family protein (TAIR:AT5G53990.1); Has 3235 Blast hits to 3215 proteins in 207 species: Archae - 0; Bacteria - 8; Metazoa - 610; Fungi - 7; Plants - 2598; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT5G54010.1p  transcript_id AT5G54010.1  protein_id AT5G54010.1p  transcript_id AT5G54010.1  
At5g54020	chr5:021921864	0.0	C/21921864-21923534	AT5G54020.1  CDS  gene_syn K19P17.19, K19P17_19  go_component intracellular|GO:0005622||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling cascade; LOCATED IN: intracellular; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT5G54050.1); Has 1020 Blast hits to 491 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 24; Fungi - 1; Plants - 976; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT5G54020.1p  transcript_id AT5G54020.1  protein_id AT5G54020.1p  transcript_id AT5G54020.1  
At5g54030	chr5:021925984	0.0	C/21925984-21927243	AT5G54030.1  CDS  gene_syn K19P17.20, K19P17_20  go_process intracellular signaling cascade|GO:0007242||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular signaling cascade; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT5G54040.1); Has 1050 Blast hits to 471 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 0; Plants - 1017; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G54030.1p  transcript_id AT5G54030.1  protein_id AT5G54030.1p  transcript_id AT5G54030.1  
At5g54040	chr5:021928847	0.0	C/21928847-21930637	AT5G54040.1  CDS  gene_syn K19P17.21, K19P17_21  go_process intracellular signaling cascade|GO:0007242||IEA  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; INVOLVED IN: intracellular signaling cascade; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT5G54050.1); Has 1421 Blast hits to 768 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 311; Fungi - 1; Plants - 1080; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT5G54040.1p  transcript_id AT5G54040.1  protein_id AT5G54040.1p  transcript_id AT5G54040.1  
At5g54045	chr5:021932253	0.0	C/21932253-21933067	AT5G54045.1  pseudogenic_transcript  pseudo  function pseudogene of UF3GT  
At5g54050	chr5:021935795	0.0	C/21935795-21935970,21933663-21935229	AT5G54050.1  CDS  gene_syn K19P17.23, K19P17_23  go_process intracellular signaling cascade|GO:0007242||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular signaling cascade; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT5G54040.1); Has 1295 Blast hits to 630 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 137; Fungi - 2; Plants - 1115; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT5G54050.1p  transcript_id AT5G54050.1  protein_id AT5G54050.1p  transcript_id AT5G54050.1  
At5g54060	chr5:021936902	0.0	C/21936902-21938308	AT5G54060.1  CDS  gene_syn MJP23.2, MJP23_2, UF3GT, udp-glucose:flavonoid 3-O-glucosyltransferase  gene UF3GT  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_process response to sucrose stimulus|GO:0009744|16384906|IEP  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UF3GT (udp-glucose:flavonoid 3-O-glucosyltransferase); transferase, transferring glycosyl groups  note udp-glucose:flavonoid 3-O-glucosyltransferase (UF3GT); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: N-terminal protein myristoylation, response to sucrose stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: glycosyltransferase family protein (TAIR:AT5G54010.1); Has 3017 Blast hits to 2996 proteins in 185 species: Archae - 0; Bacteria - 10; Metazoa - 424; Fungi - 6; Plants - 2563; Viruses - 8; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G54060.1p  transcript_id AT5G54060.1  protein_id AT5G54060.1p  transcript_id AT5G54060.1  
At5g54062	chr5:021938857	0.0	W/21938857-21939480	AT5G54062.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G53742.1); Has 145 Blast hits to 85 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G54062.1p  transcript_id AT5G54062.1  protein_id AT5G54062.1p  transcript_id AT5G54062.1  
At5g54064	chr5:021940180	0.0	W/21940180-21941679	AT5G54064.2  pseudogenic_transcript  pseudo  note pseudogene, similar to putative receptor protein kinase-like protein, blastp match of 39% identity and 1.2e-53 P-value to GP|15289871|dbj|BAB63567.1||AP003224 putative receptor protein kinase-like protein {Oryza sativa (japonica cultivar-group)}  
At5g54067	chr5:021941766	0.0	C/21941766-21942146	AT5G54067.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G50220.1); Has 18 Blast hits to 18 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G54067.1p  transcript_id AT5G54067.1  protein_id AT5G54067.1p  transcript_id AT5G54067.1  
At5g54070	chr5:021944018	0.0	W/21944018-21944407,21944487-21945092	AT5G54070.1  CDS  gene_syn AT-HSFA9, HEAT SHOCK TRANSCRIPTION FACTOR A9, HSFA9, MJP23.4, MJP23_4  gene AT-HSFA9  function A member of Heat Stress Transcription Factor (Hsf) family. Not responding to heat stress. Is regulated by the seed-specific transcription factor ABI3. In turn, it regulates other heat stress proteins including Hsp17.4-CI, Hsp17.7-CII and Hsp101 during seed maturation.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AT-HSFA9; DNA binding / transcription factor  note AT-HSFA9; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED DURING: seed maturation stage; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: ATHSFA2; DNA binding / transcription factor (TAIR:AT2G26150.1); Has 1389 Blast hits to 1385 proteins in 157 species: Archae - 0; Bacteria - 4; Metazoa - 310; Fungi - 317; Plants - 457; Viruses - 0; Other Eukaryotes - 301 (source: NCBI BLink).  protein_id AT5G54070.1p  transcript_id AT5G54070.1  protein_id AT5G54070.1p  transcript_id AT5G54070.1  
At5g54075	chr5:021945349	0.0	C/21945349-21945709	AT5G54075.1  snoRNA  gene_syn U3 SMALL NUCLEOLAR RNA D, U3D  gene U3D  function U3 small nucleolar RNA  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product U3D (U3 SMALL NUCLEOLAR RNA D); snoRNA  transcript_id AT5G54075.1  
At5g54080	chr5:021945920	0.0	W/21945920-21946110,21946187-21946417,21946507-21946586,21946708-21946875,21946952-21947127,21947208-21947277,21947385-21947539,21947632-21947715,21947840-21948070	AT5G54080.1  CDS  gene_syn HGO, HOMOGENTISATE 1,2-DIOXYGENASE, MJP23.6, MJP23_6  gene HGO  function homogentisate 1,2-dioxygenase  go_process L-phenylalanine catabolic process|GO:0006559||IEA  go_process tyrosine metabolic process|GO:0006570||IEA  go_function homogentisate 1,2-dioxygenase activity|GO:0004411||IEA  go_component cellular_component|GO:0005575||ND  go_process L-phenylalanine catabolic process|GO:0006559||ISS  go_process tyrosine catabolic process|GO:0006572||ISS  go_function homogentisate 1,2-dioxygenase activity|GO:0004411||ISS  product HGO (HOMOGENTISATE 1,2-DIOXYGENASE); homogentisate 1,2-dioxygenase  note HOMOGENTISATE 1,2-DIOXYGENASE (HGO); FUNCTIONS IN: homogentisate 1,2-dioxygenase activity; INVOLVED IN: tyrosine metabolic process, L-phenylalanine catabolic process, tyrosine catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Homogentisate 1,2-dioxygenase (InterPro:IPR005708); Has 1166 Blast hits to 1164 proteins in 440 species: Archae - 3; Bacteria - 711; Metazoa - 124; Fungi - 98; Plants - 23; Viruses - 0; Other Eukaryotes - 207 (source: NCBI BLink).  protein_id AT5G54080.1p  transcript_id AT5G54080.1  protein_id AT5G54080.1p  transcript_id AT5G54080.1  
At5g54080	chr5:021945920	0.0	W/21945920-21946110,21946187-21946417,21946507-21946586,21946708-21946875,21946952-21947127,21947208-21947277,21947385-21947539,21947632-21947715,21947840-21948070	AT5G54080.2  CDS  gene_syn HGO, HOMOGENTISATE 1,2-DIOXYGENASE, MJP23.6, MJP23_6  gene HGO  function homogentisate 1,2-dioxygenase  go_process L-phenylalanine catabolic process|GO:0006559||IEA  go_process tyrosine metabolic process|GO:0006570||IEA  go_function homogentisate 1,2-dioxygenase activity|GO:0004411||IEA  go_component cellular_component|GO:0005575||ND  go_process L-phenylalanine catabolic process|GO:0006559||ISS  go_process tyrosine catabolic process|GO:0006572||ISS  go_function homogentisate 1,2-dioxygenase activity|GO:0004411||ISS  product HGO (HOMOGENTISATE 1,2-DIOXYGENASE); homogentisate 1,2-dioxygenase  note HOMOGENTISATE 1,2-DIOXYGENASE (HGO); FUNCTIONS IN: homogentisate 1,2-dioxygenase activity; INVOLVED IN: tyrosine metabolic process, L-phenylalanine catabolic process, tyrosine catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Homogentisate 1,2-dioxygenase (InterPro:IPR005708); Has 1166 Blast hits to 1164 proteins in 440 species: Archae - 3; Bacteria - 711; Metazoa - 124; Fungi - 98; Plants - 23; Viruses - 0; Other Eukaryotes - 207 (source: NCBI BLink).  protein_id AT5G54080.2p  transcript_id AT5G54080.2  protein_id AT5G54080.2p  transcript_id AT5G54080.2  
At5g54090	chr5:021952317	0.0	C/21952317-21952550,21952109-21952237,21951855-21952022,21951687-21951770,21951557-21951607,21951414-21951470,21951264-21951358,21950965-21951133,21950380-21950628,21950145-21950295,21949887-21950014,21949559-21949606,21949332-21949462,21949165-21949247,21948883-21949057,21948529-21948803,21948283-21948443	AT5G54090.1  CDS  gene_syn MJP23.7, MJP23_7  go_component chloroplast|GO:0009507||IEA  go_process mismatch repair|GO:0006298||IEA  go_process maintenance of fidelity during DNA-dependent DNA replication|GO:0045005||IEA  go_function damaged DNA binding|GO:0003684||IEA  go_function ATP binding|GO:0005524||IEA  go_function mismatched DNA binding|GO:0030983||IEA  go_process mismatch repair|GO:0006298||ISS  go_function damaged DNA binding|GO:0003684||ISS  go_function ATP binding|GO:0005524||ISS  product DNA mismatch repair MutS family protein  note DNA mismatch repair MutS family protein; FUNCTIONS IN: damaged DNA binding, mismatched DNA binding, ATP binding; INVOLVED IN: mismatch repair, maintenance of fidelity during DNA-dependent DNA replication; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, type 2 (InterPro:IPR005747), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432); BEST Arabidopsis thaliana protein match is: DNA mismatch repair MutS family protein (TAIR:AT1G65070.1); Has 7628 Blast hits to 7622 proteins in 1491 species: Archae - 93; Bacteria - 4791; Metazoa - 481; Fungi - 500; Plants - 176; Viruses - 3; Other Eukaryotes - 1584 (source: NCBI BLink).  protein_id AT5G54090.1p  transcript_id AT5G54090.1  protein_id AT5G54090.1p  transcript_id AT5G54090.1  
At5g54095	chr5:021953271	0.0	C/21953271-21953369,21952868-21953176	AT5G54095.1  CDS  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27580.1); Has 10357 Blast hits to 4762 proteins in 655 species: Archae - 26; Bacteria - 2242; Metazoa - 1671; Fungi - 757; Plants - 291; Viruses - 87; Other Eukaryotes - 5283 (source: NCBI BLink).  protein_id AT5G54095.1p  transcript_id AT5G54095.1  protein_id AT5G54095.1p  transcript_id AT5G54095.1  
At5g54100	chr5:021956352	0.0	C/21956352-21956500,21956108-21956242,21955740-21955983,21955502-21955651,21955183-21955240,21955010-21955102,21954795-21954893,21954558-21954649,21954255-21954314,21954035-21954160	AT5G54100.1  CDS  gene_syn MJP23.8, MJP23_8  go_component mitochondrion|GO:0005739|11743114|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process biological_process|GO:0008150||ND  product band 7 family protein  note band 7 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: Stomatin (InterPro:IPR001972), Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: band 7 family protein (TAIR:AT4G27585.1); Has 7962 Blast hits to 7908 proteins in 1325 species: Archae - 149; Bacteria - 4153; Metazoa - 844; Fungi - 125; Plants - 179; Viruses - 3; Other Eukaryotes - 2509 (source: NCBI BLink).  protein_id AT5G54100.1p  transcript_id AT5G54100.1  protein_id AT5G54100.1p  transcript_id AT5G54100.1  
At5g54110	chr5:021958356	0.0	W/21958356-21958620,21958821-21958891,21959052-21959133,21959240-21959361,21959932-21960009,21960098-21960217,21960305-21960367	AT5G54110.1  CDS  gene_syn ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED MANNITOL-INDUCED, ATMAMI  gene ATMAMI  function Encodes a highly polar protein with more than 60% hydrophilic amino acid residues that is associated with the plasma membrane. It has limited secondary structure similarity to VAP-33 from Aplysia, which may be involved in membrane trafficking.  go_component plasma membrane|GO:0005886|17317660|IDA  go_function structural molecule activity|GO:0005198||IEA  go_component plasma membrane|GO:0005886|9300811|IDA  go_process response to osmotic stress|GO:0006970|9300811|IEP  go_function structural molecule activity|GO:0005198||ISS  product ATMAMI (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED MANNITOL-INDUCED); structural molecule  note ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED MANNITOL-INDUCED (ATMAMI); FUNCTIONS IN: structural molecule activity; INVOLVED IN: response to osmotic stress; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535); BEST Arabidopsis thaliana protein match is: vesicle-associated membrane family protein / VAMP family protein (TAIR:AT4G21450.1); Has 503 Blast hits to 502 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 243; Fungi - 51; Plants - 176; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT5G54110.1p  transcript_id AT5G54110.1  protein_id AT5G54110.1p  transcript_id AT5G54110.1  
At5g54130	chr5:021962900	0.0	W/21962900-21963031,21963111-21963215,21963296-21963395,21963493-21963704,21963791-21963867,21963955-21964063,21964177-21964302,21964533-21964643,21964764-21964841	AT5G54130.3  CDS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein / calcium-binding EF hand family protein (TAIR:AT1G02270.1); Has 159 Blast hits to 159 proteins in 52 species: Archae - 0; Bacteria - 2; Metazoa - 63; Fungi - 7; Plants - 55; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT5G54130.3p  transcript_id AT5G54130.3  protein_id AT5G54130.3p  transcript_id AT5G54130.3  
At5g54130	chr5:021962900	0.0	W/21962900-21963031,21963111-21963215,21963296-21963401,21963493-21963704,21963791-21963867,21963955-21964063,21964177-21964302,21964533-21964643,21964751-21964858,21965055-21965279	AT5G54130.2  CDS  go_function calcium ion binding|GO:0005509||IEA  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein / calcium-binding EF hand family protein (TAIR:AT1G02270.1); Has 268 Blast hits to 268 proteins in 73 species: Archae - 0; Bacteria - 2; Metazoa - 134; Fungi - 11; Plants - 75; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT5G54130.2p  transcript_id AT5G54130.2  protein_id AT5G54130.2p  transcript_id AT5G54130.2  
At5g54130	chr5:021962900	0.0	W/21962900-21963031,21963111-21963215,21963296-21963401,21963493-21963704,21963791-21963867,21963955-21964063,21964177-21964302,21964533-21964643,21964764-21964841	AT5G54130.4  CDS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein / calcium-binding EF hand family protein (TAIR:AT1G02270.1); Has 262 Blast hits to 262 proteins in 72 species: Archae - 0; Bacteria - 2; Metazoa - 134; Fungi - 11; Plants - 67; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT5G54130.4p  transcript_id AT5G54130.4  protein_id AT5G54130.4p  transcript_id AT5G54130.4  
At5g54140	chr5:021965833	0.0	W/21965833-21966159,21966237-21966362,21966589-21966903,21967001-21967132,21967448-21967834	AT5G54140.1  CDS  gene_syn ILL3, MJP23.12, MJP23_12  gene ILL3  function encodes a protein similar to IAA amino acid conjugate hydrolase  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||ISS  go_process auxin metabolic process|GO:0009850|10072397|ISS  go_function metallopeptidase activity|GO:0008237||ISS  go_function IAA-amino acid conjugate hydrolase activity|GO:0010178|10072397|ISS  product ILL3; IAA-amino acid conjugate hydrolase/ metallopeptidase  note ILL3; FUNCTIONS IN: IAA-amino acid conjugate hydrolase activity, metallopeptidase activity; INVOLVED IN: proteolysis, auxin metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M20 (InterPro:IPR002933), Peptidase M20, dimerisation (InterPro:IPR011650), Peptidase M20D, amidohydrolase (InterPro:IPR010168), Peptidase M20D, mername-AA028/carboxypeptidase Ss1 (InterPro:IPR017439); BEST Arabidopsis thaliana protein match is: IAR3 (IAA-ALANINE RESISTANT 3); IAA-Ala conjugate hydrolase/ metallopeptidase (TAIR:AT1G51760.1); Has 7154 Blast hits to 7147 proteins in 988 species: Archae - 60; Bacteria - 4156; Metazoa - 61; Fungi - 154; Plants - 183; Viruses - 0; Other Eukaryotes - 2540 (source: NCBI BLink).  protein_id AT5G54140.1p  transcript_id AT5G54140.1  protein_id AT5G54140.1p  transcript_id AT5G54140.1  
At5g54145	chr5:021972558	0.0	W/21972558-21972749	AT5G54145.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27657.1); Has 11 Blast hits to 11 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G54145.1p  transcript_id AT5G54145.1  protein_id AT5G54145.1p  transcript_id AT5G54145.1  
At5g54148	chr5:021976864	0.0	C/21976864-21977032,21976655-21976728,21976465-21976572	AT5G54148.1  CDS  product unknown protein  note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54150.1).  protein_id AT5G54148.1p  transcript_id AT5G54148.1  protein_id AT5G54148.1p  transcript_id AT5G54148.1  
At5g54150	chr5:021977974	0.0	C/21977974-21978237,21977761-21977847,21977461-21977592	AT5G54150.1  CDS  gene_syn K18G13.2, K18G13_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27660.1); Has 30 Blast hits to 28 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G54150.1p  transcript_id AT5G54150.1  protein_id AT5G54150.1p  transcript_id AT5G54150.1  
At5g54160	chr5:021982075	0.0	W/21982075-21982487,21983294-21983604,21983685-21983749,21983865-21984167	AT5G54160.1  CDS  gene_syn ATOMT1, K18G13.3, K18G13_3, O-METHYLTRANSFERASE 1, OMT1  gene ATOMT1  function A caffeic acid/5-hydroxyferulic acid O-methyltransferase. Interacts with 14-4-3 proteins in yeast 2 hybrid assay. AtOMT1 (At5g54160) encodes a flavonol 3 -O-methyltransferase that is highly active towards quercetin and myricetin. The substrate specificity identifies the enzyme as flavonol 3 -methyltransferase which replaces the former annotation of the gene to encode a caffeic acid/5-hydroxyferulic acid O-methyltransferase  go_component plasma membrane|GO:0005886|17317660|IDA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component cytosol|GO:0005829|9484457|TAS  go_process lignin biosynthetic process|GO:0009809|12777055|IMP  go_process flavonol biosynthetic process|GO:0051555|10700397|IDA  go_function quercetin 3-O-methyltransferase activity|GO:0030755|10700397|IDA  go_function myricetin 3 -O-methyltransferase activity|GO:0033799|10700397|IDA  go_function caffeate O-methyltransferase activity|GO:0047763|10700397|ISS  go_function caffeate O-methyltransferase activity|GO:0047763|12777055|IMP  product ATOMT1 (O-METHYLTRANSFERASE 1); caffeate O-methyltransferase/ myricetin 3 -O-methyltransferase/ quercetin 3-O-methyltransferase  note O-METHYLTRANSFERASE 1 (ATOMT1); FUNCTIONS IN: myricetin 3 -O-methyltransferase activity, quercetin 3-O-methyltransferase activity, caffeate O-methyltransferase activity; INVOLVED IN: flavonol biosynthetic process, lignin biosynthetic process; LOCATED IN: cytosol, nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family 2 protein (TAIR:AT1G77530.1); Has 2278 Blast hits to 2276 proteins in 440 species: Archae - 2; Bacteria - 661; Metazoa - 89; Fungi - 489; Plants - 929; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT5G54160.1p  transcript_id AT5G54160.1  protein_id AT5G54160.1p  transcript_id AT5G54160.1  
At5g54165	chr5:021984620	0.0	W/21984620-21984868	AT5G54165.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 21 Blast hits to 21 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G54165.1p  transcript_id AT5G54165.1  protein_id AT5G54165.1p  transcript_id AT5G54165.1  
At5g54170	chr5:021986690	0.0	C/21986690-21987039,21986436-21986598,21986174-21986350,21985987-21986070,21985635-21985716,21985056-21985549	AT5G54170.1  CDS  gene_syn K18G13.4, K18G13_4  go_process response to wounding|GO:0009611|17675405|IEP  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to wounding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: CP5 (TAIR:AT1G64720.1); Has 233 Blast hits to 233 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 142; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT5G54170.1p  transcript_id AT5G54170.1  protein_id AT5G54170.1p  transcript_id AT5G54170.1  
At5g54180	chr5:021988544	0.0	W/21988544-21988778,21988916-21990183	AT5G54180.1  CDS  gene_syn K18G13.5, K18G13_5, PLASTID TRANSCRIPTIONALLY ACTIVE15, PTAC15  gene PTAC15  go_component nucleoid|GO:0009295|16326926|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastid chromosome|GO:0009508|16326926|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product PTAC15 (PLASTID TRANSCRIPTIONALLY ACTIVE15)  note PLASTID TRANSCRIPTIONALLY ACTIVE15 (PTAC15); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plastid chromosome, chloroplast, nucleoid; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14605.1); Has 607 Blast hits to 461 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 67; Fungi - 0; Plants - 515; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT5G54180.1p  transcript_id AT5G54180.1  protein_id AT5G54180.1p  transcript_id AT5G54180.1  
At5g54190	chr5:021991899	0.0	C/21991899-21992238,21991443-21991801,21991183-21991338	AT5G54190.2  CDS  gene_syn K18G13.7, K18G13_7, PORA  gene PORA  function light-dependent NADPH:protochlorophyllide oxidoreductase A  go_component chloroplast|GO:0009507|8624514|NAS  go_process chlorophyll biosynthetic process|GO:0015995|7659751|TAS  go_function oxidoreductase activity|GO:0016491||ISS  go_function protochlorophyllide reductase activity|GO:0016630|15632054|NAS  go_function protochlorophyllide reductase activity|GO:0016630|7659751|TAS  product PORA; oxidoreductase/ protochlorophyllide reductase  note PORA; FUNCTIONS IN: oxidoreductase activity, protochlorophyllide reductase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Light-dependent protochlorophyllide reductase (InterPro:IPR005979), NAD(P)-binding (InterPro:IPR016040), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B); oxidoreductase/ protochlorophyllide reductase (TAIR:AT4G27440.2); Has 3808 Blast hits to 3797 proteins in 485 species: Archae - 18; Bacteria - 1053; Metazoa - 942; Fungi - 412; Plants - 384; Viruses - 0; Other Eukaryotes - 999 (source: NCBI BLink).  protein_id AT5G54190.2p  transcript_id AT5G54190.2  protein_id AT5G54190.2p  transcript_id AT5G54190.2  
At5g54190	chr5:021992720	0.0	C/21992720-21992773,21992519-21992629,21991899-21992436,21991443-21991801,21991183-21991338	AT5G54190.1  CDS  gene_syn K18G13.7, K18G13_7, PORA  gene PORA  function light-dependent NADPH:protochlorophyllide oxidoreductase A  go_component chloroplast|GO:0009507|8624514|NAS  go_process chlorophyll biosynthetic process|GO:0015995|7659751|TAS  go_function oxidoreductase activity|GO:0016491||ISS  go_function protochlorophyllide reductase activity|GO:0016630|15632054|NAS  go_function protochlorophyllide reductase activity|GO:0016630|7659751|TAS  product PORA; oxidoreductase/ protochlorophyllide reductase  note PORA; FUNCTIONS IN: oxidoreductase activity, protochlorophyllide reductase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Light-dependent protochlorophyllide reductase (InterPro:IPR005979), NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B); oxidoreductase/ protochlorophyllide reductase (TAIR:AT4G27440.2); Has 11226 Blast hits to 11211 proteins in 1111 species: Archae - 90; Bacteria - 4980; Metazoa - 1444; Fungi - 1071; Plants - 511; Viruses - 0; Other Eukaryotes - 3130 (source: NCBI BLink).  protein_id AT5G54190.1p  transcript_id AT5G54190.1  protein_id AT5G54190.1p  transcript_id AT5G54190.1  
At5g54200	chr5:021995637	0.0	C/21995637-21997076,21995309-21995399,21994886-21995043,21994743-21994794,21994573-21994655,21994369-21994462,21993565-21994124	AT5G54200.1  CDS  gene_syn K18G13.8, K18G13_8  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_process signal transduction|GO:0007165||ISS  go_function signal transducer activity|GO:0004871||ISS  product WD-40 repeat family protein  note WD-40 repeat family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: signal transduction; LOCATED IN: heterotrimeric G-protein complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein (TAIR:AT3G15470.1); Has 24514 Blast hits to 15290 proteins in 519 species: Archae - 42; Bacteria - 3607; Metazoa - 10867; Fungi - 4621; Plants - 2078; Viruses - 3; Other Eukaryotes - 3296 (source: NCBI BLink).  protein_id AT5G54200.1p  transcript_id AT5G54200.1  protein_id AT5G54200.1p  transcript_id AT5G54200.1  
At5g54203	chr5:022002219	0.0	C/22002219-22006640	AT5G54203.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.1e-192 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)  
At5g54206	chr5:022006903	0.0	W/22006903-22008432	AT5G54206.1  pseudogenic_transcript  pseudo  note 12-oxophytodienoate reductase-related, similar to 12-oxophytodienoate reductase OPR1 (Arabidopsis thaliana) GI:3882355  
At5g54210	chr5:022008612	0.0	W/22008612-22009532	AT5G54210.1  CDS  gene_syn MDK4.3, MDK4_3  go_component nucleus|GO:0005634||IEA  go_function phosphoprotein phosphatase activity|GO:0004721||IEA  go_process biological_process|GO:0008150||ND  product NLI interacting factor (NIF) family protein  note NLI interacting factor (NIF) family protein; FUNCTIONS IN: phosphoprotein phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: FCP1-like phosphatase, phosphatase domain (InterPro:IPR011947), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: NLI interacting factor (NIF) family protein (TAIR:AT1G20320.1); Has 1312 Blast hits to 1312 proteins in 160 species: Archae - 0; Bacteria - 2; Metazoa - 475; Fungi - 240; Plants - 162; Viruses - 0; Other Eukaryotes - 433 (source: NCBI BLink).  protein_id AT5G54210.1p  transcript_id AT5G54210.1  protein_id AT5G54210.1p  transcript_id AT5G54210.1  
At5g54215	chr5:022010063	0.0	W/22010063-22010135,22010232-22010410	AT5G54215.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25305.1); Has 12 Blast hits to 12 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G54215.1p  transcript_id AT5G54215.1  protein_id AT5G54215.1p  transcript_id AT5G54215.1  
At5g54220	chr5:022011349	0.0	W/22011349-22011421,22011538-22011755	AT5G54220.1  CDS  gene_syn MDK4.4, MDK4_4  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24062.1); Has 13 Blast hits to 13 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G54220.1p  transcript_id AT5G54220.1  protein_id AT5G54220.1p  transcript_id AT5G54220.1  
At5g54225	chr5:022013878	0.0	W/22013878-22013956,22014152-22014321	AT5G54225.1  CDS  gene_syn LCR83, Low-molecular-weight cysteine-rich 83  gene LCR83  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR83 (Low-molecular-weight cysteine-rich 83)  note Low-molecular-weight cysteine-rich 83 (LCR83); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54220.1); Has 21 Blast hits to 21 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G54225.1p  transcript_id AT5G54225.1  protein_id AT5G54225.1p  transcript_id AT5G54225.1  
At5g54230	chr5:022017713	0.0	C/22017713-22017845,22017386-22017515,22016357-22017053	AT5G54230.1  CDS  gene_syn AtMYB49, MDK4.5, MDK4_5, MYB49, myb domain protein 49  gene MYB49  function Encodes a putative transcription factor (MYB49).  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB49 (myb domain protein 49); transcription factor  note myb domain protein 49 (MYB49); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to salt stress, response to abscisic acid stimulus, regulation of transcription, response to salicylic acid stimulus; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: ATMYB102 (ARABIDOPSIS MYB-LIKE 102); DNA binding / transcription factor (TAIR:AT4G21440.1); Has 6475 Blast hits to 5955 proteins in 371 species: Archae - 0; Bacteria - 0; Metazoa - 707; Fungi - 306; Plants - 3880; Viruses - 6; Other Eukaryotes - 1576 (source: NCBI BLink).  protein_id AT5G54230.1p  transcript_id AT5G54230.1  protein_id AT5G54230.1p  transcript_id AT5G54230.1  
At5g54240	chr5:022023973	0.0	C/22023973-22024461,22023339-22023698	AT5G54240.1  CDS  gene_syn MDK4.6, MDK4_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1223 (InterPro:IPR010634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27350.1); Has 364 Blast hits to 364 proteins in 161 species: Archae - 0; Bacteria - 300; Metazoa - 0; Fungi - 2; Plants - 24; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT5G54240.1p  transcript_id AT5G54240.1  protein_id AT5G54240.1p  transcript_id AT5G54240.1  
At5g54250	chr5:022029369	0.0	C/22029369-22029971,22028498-22028713,22027517-22027830,22027174-22027282,22026854-22027090,22026665-22026751,22026070-22026434,22025684-22025837	AT5G54250.1  CDS  gene_syn ATCNGC4, CNGC4, CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4, DEFENSE, NO DEATH 2, DND2, HLM1, MDK4.7, MDK4_7  gene ATCNGC4  function member of Cyclic nucleotide gated channel family, downstream component of the signaling pathways leading to HR resistance. mutant plants exhibit gene-for-gene disease resistance against avirulent Pseudomonas syringae despite the near-complete absence of the hypersensitive response (HR). Salicylic acid accumulation in dnd2 mutants is completely PAD4-independent.  go_component membrane|GO:0016020||IDA  go_process plant-type hypersensitive response|GO:0009626|12566578|IMP  go_function cation channel activity|GO:0005261||ISS  go_function calmodulin binding|GO:0005516|11782485|TAS  go_function cation transmembrane transporter activity|GO:0008324|12566578|IDA  go_function cyclic nucleotide binding|GO:0030551||ISS  product ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4); calmodulin binding / cation channel/ cation transmembrane transporter/ cyclic nucleotide binding  note CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4 (ATCNGC4); FUNCTIONS IN: cation transmembrane transporter activity, cyclic nucleotide binding, calmodulin binding, cation channel activity; INVOLVED IN: plant-type hypersensitive response; LOCATED IN: membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: DND1 (DEFENSE NO DEATH 1); calcium channel/ calmodulin binding / cation channel/ cyclic nucleotide binding / intracellular cAMP activated cation channel/ intracellular cyclic nucleotide activated cation channel/ inward rectifier potassium channel (TAIR:AT5G15410.1); Has 17464 Blast hits to 4370 proteins in 344 species: Archae - 0; Bacteria - 137; Metazoa - 13098; Fungi - 577; Plants - 985; Viruses - 292; Other Eukaryotes - 2375 (source: NCBI BLink).  protein_id AT5G54250.1p  transcript_id AT5G54250.1  protein_id AT5G54250.1p  transcript_id AT5G54250.1  
At5g54250	chr5:022029369	0.0	C/22029369-22029971,22028498-22028713,22027517-22027830,22027174-22027282,22026854-22027090,22026665-22026751,22026070-22026434,22025684-22025837	AT5G54250.2  CDS  gene_syn ATCNGC4, CNGC4, CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4, DEFENSE, NO DEATH 2, DND2, HLM1, MDK4.7, MDK4_7  gene ATCNGC4  function member of Cyclic nucleotide gated channel family, downstream component of the signaling pathways leading to HR resistance. mutant plants exhibit gene-for-gene disease resistance against avirulent Pseudomonas syringae despite the near-complete absence of the hypersensitive response (HR). Salicylic acid accumulation in dnd2 mutants is completely PAD4-independent.  go_component membrane|GO:0016020||IDA  go_process plant-type hypersensitive response|GO:0009626|12566578|IMP  go_function cation channel activity|GO:0005261||ISS  go_function calmodulin binding|GO:0005516|11782485|TAS  go_function cation transmembrane transporter activity|GO:0008324|12566578|IDA  go_function cyclic nucleotide binding|GO:0030551||ISS  product ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4); calmodulin binding / cation channel/ cation transmembrane transporter/ cyclic nucleotide binding  note CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4 (ATCNGC4); FUNCTIONS IN: cation transmembrane transporter activity, cyclic nucleotide binding, calmodulin binding, cation channel activity; INVOLVED IN: plant-type hypersensitive response; LOCATED IN: membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: DND1 (DEFENSE NO DEATH 1); calcium channel/ calmodulin binding / cation channel/ cyclic nucleotide binding / intracellular cAMP activated cation channel/ intracellular cyclic nucleotide activated cation channel/ inward rectifier potassium channel (TAIR:AT5G15410.1); Has 17464 Blast hits to 4370 proteins in 344 species: Archae - 0; Bacteria - 137; Metazoa - 13098; Fungi - 577; Plants - 985; Viruses - 292; Other Eukaryotes - 2375 (source: NCBI BLink).  protein_id AT5G54250.2p  transcript_id AT5G54250.2  protein_id AT5G54250.2p  transcript_id AT5G54250.2  
At5g54260	chr5:022032702	0.0	W/22032702-22032709,22032920-22033055,22033253-22033410,22033553-22033643,22033766-22033885,22033966-22034034,22034103-22034194,22034283-22034385,22034485-22034592,22034714-22034776,22034848-22034919,22035023-22035100,22035298-22035360,22035449-22035509,22035991-22036073,22036217-22036330,22036450-22036527,22036614-22036685,22036772-22037004,22037117-22037240,22037399-22037602,22037717-22037749	AT5G54260.1  CDS  gene_syn MDK4.8, MDK4_8, MRE11, meiotic recombination 11  gene MRE11  function DNA repair and meiotic recombination protein, component of MRE11 complex with RAD50 and NBS1  go_component nucleus|GO:0005634||IEA  go_process DNA metabolic process|GO:0006259||IEA  go_process double-strand break repair|GO:0006302||IEA  go_function endonuclease activity|GO:0004519||IEA  go_function exonuclease activity|GO:0004527||IEA  go_function hydrolase activity|GO:0016787||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product MRE11 (meiotic recombination 11); endonuclease/ exonuclease/ hydrolase/ manganese ion binding / protein serine/threonine phosphatase  note meiotic recombination 11 (MRE11); FUNCTIONS IN: hydrolase activity, manganese ion binding, protein serine/threonine phosphatase activity, exonuclease activity, endonuclease activity; INVOLVED IN: double-strand break repair, DNA metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), DNA repair exonuclease (InterPro:IPR003701), Mre11, DNA-binding (InterPro:IPR007281); Has 3634 Blast hits to 2299 proteins in 356 species: Archae - 89; Bacteria - 170; Metazoa - 1641; Fungi - 503; Plants - 115; Viruses - 31; Other Eukaryotes - 1085 (source: NCBI BLink).  protein_id AT5G54260.1p  transcript_id AT5G54260.1  protein_id AT5G54260.1p  transcript_id AT5G54260.1  
At5g54270	chr5:022038424	0.0	W/22038424-22038549,22038648-22038809,22038874-22039383	AT5G54270.1  CDS  gene_syn LHCB3, LHCB3*1, LIGHT-HARVESTING CHLOROPHYLL B-BINDING PROTEIN 3, MDK4.9, MDK4_9  gene LHCB3  function Lhcb3 protein is a component of the main light harvesting chlorophyll a/b-protein complex of Photosystem II (LHC II).  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_process photosynthesis, light harvesting|GO:0009765||IEA  go_component light-harvesting complex|GO:0030076||ISS  go_process photosynthesis|GO:0015979||ISS  go_function structural molecule activity|GO:0005198|11245797|IDA  product LHCB3 (LIGHT-HARVESTING CHLOROPHYLL B-BINDING PROTEIN 3); structural molecule  note LIGHT-HARVESTING CHLOROPHYLL B-BINDING PROTEIN 3 (LHCB3); FUNCTIONS IN: structural molecule activity; INVOLVED IN: photosynthesis, light harvesting, photosynthesis; LOCATED IN: light-harvesting complex, thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: LHCB2.1; chlorophyll binding (TAIR:AT2G05100.1); Has 1780 Blast hits to 1710 proteins in 195 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1537; Viruses - 0; Other Eukaryotes - 241 (source: NCBI BLink).  protein_id AT5G54270.1p  transcript_id AT5G54270.1  protein_id AT5G54270.1p  transcript_id AT5G54270.1  
At5g54280	chr5:022044698	0.0	C/22044698-22044715,22044459-22044602,22044217-22044367,22044079-22044103,22043789-22043957,22043574-22043637,22043441-22043454,22043270-22043354,22043015-22043118,22042774-22042912,22042577-22042695,22042330-22042482,22042151-22042240,22041991-22042068,22041737-22041895,22041426-22041611,22040997-22041338,22040666-22040909,22040469-22040584,22040174-22040386,22039606-22040085	AT5G54280.1  CDS  gene_syn ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 2, ARABIDOPSIS THALIANA MYOSIN 4, ATM2, ATM4, ATMYOS1, MDK4.10, MDK4_10, MYOSIN 4  gene ATM2  function Type VII myosin gene  go_component plasma membrane|GO:0005886|17317660|IDA  go_component myosin complex|GO:0016459|11516337|ISS  go_process actin filament-based movement|GO:0030048|11516337|TAS  go_function motor activity|GO:0003774|11516337|ISS  product ATM2 (ARABIDOPSIS THALIANA MYOSIN 2); motor  note ARABIDOPSIS THALIANA MYOSIN 2 (ATM2); FUNCTIONS IN: motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: plasma membrane, myosin complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Myosin head, motor region (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: VIIIB; motor (TAIR:AT4G27370.1); Has 5311 Blast hits to 4973 proteins in 438 species: Archae - 3; Bacteria - 3; Metazoa - 3697; Fungi - 496; Plants - 252; Viruses - 0; Other Eukaryotes - 860 (source: NCBI BLink).  protein_id AT5G54280.1p  transcript_id AT5G54280.1  protein_id AT5G54280.1p  transcript_id AT5G54280.1  
At5g54280	chr5:022045110	0.0	C/22045110-22045592,22044698-22044799,22044459-22044602,22044217-22044367,22044079-22044106,22043789-22043957,22043574-22043637,22043441-22043454,22043270-22043354,22043015-22043118,22042774-22042912,22042577-22042695,22042330-22042482,22042151-22042240,22041991-22042068,22041737-22041895,22041426-22041611,22040997-22041338,22040666-22040909,22040469-22040584,22040174-22040386,22039606-22040085	AT5G54280.2  CDS  gene_syn ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 2, ARABIDOPSIS THALIANA MYOSIN 4, ATM2, ATM4, ATMYOS1, MDK4.10, MDK4_10, MYOSIN 4  gene ATM2  function Type VII myosin gene  go_component plasma membrane|GO:0005886|17317660|IDA  go_component myosin complex|GO:0016459|11516337|ISS  go_process actin filament-based movement|GO:0030048|11516337|TAS  go_function motor activity|GO:0003774|11516337|ISS  product ATM2 (ARABIDOPSIS THALIANA MYOSIN 2); motor  note ARABIDOPSIS THALIANA MYOSIN 2 (ATM2); FUNCTIONS IN: motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: plasma membrane, myosin complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Myosin head, motor region (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: VIIIB; motor (TAIR:AT4G27370.1); Has 5346 Blast hits to 5000 proteins in 438 species: Archae - 3; Bacteria - 3; Metazoa - 3727; Fungi - 496; Plants - 259; Viruses - 0; Other Eukaryotes - 858 (source: NCBI BLink).  protein_id AT5G54280.2p  transcript_id AT5G54280.2  protein_id AT5G54280.2p  transcript_id AT5G54280.2  
At5g54290	chr5:022051097	0.0	W/22051097-22051169,22051514-22051645,22051837-22051895,22052177-22052307,22052392-22052477,22052586-22052617,22052846-22053007,22053107-22053179,22053265-22053365,22053514-22053606,22053709-22053755,22053848-22053923	AT5G54290.1  CDS  go_component membrane|GO:0016020||IEA  go_process cytochrome complex assembly|GO:0017004||IEA  go_component membrane|GO:0016020||ISS  go_process cytochrome complex assembly|GO:0017004||ISS  product cytochrome c biogenesis protein family  note cytochrome c biogenesis protein family; INVOLVED IN: cytochrome complex assembly; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c assembly protein, transmembrane region (InterPro:IPR003834); Has 4702 Blast hits to 4702 proteins in 1058 species: Archae - 87; Bacteria - 2936; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 1651 (source: NCBI BLink).  protein_id AT5G54290.1p  transcript_id AT5G54290.1  protein_id AT5G54290.1p  transcript_id AT5G54290.1  
At5g54300	chr5:022054745	0.0	C/22054745-22055342,22054270-22054652	AT5G54300.1  CDS  gene_syn MDK4.12, MDK4_12  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF761, plant (InterPro:IPR008480); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61260.1); Has 243 Blast hits to 224 proteins in 48 species: Archae - 2; Bacteria - 5; Metazoa - 93; Fungi - 7; Plants - 69; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT5G54300.1p  transcript_id AT5G54300.1  protein_id AT5G54300.1p  transcript_id AT5G54300.1  
At5g54310	chr5:022061016	0.0	C/22061016-22061066,22060140-22060198,22059962-22060052,22059508-22059562,22059331-22059421,22058982-22059213,22058502-22058715,22058195-22058367,22057730-22057969,22057544-22057620,22057262-22057430	AT5G54310.1  CDS  gene_syn AGD5, ARF-GAP domain 5, MDK4.13, MDK4_13  gene AGD5  function A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.  go_process regulation of ARF GTPase activity|GO:0032312||IEA  go_function ARF GTPase activator activity|GO:0008060||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_component cytosol|GO:0005829|18433157|IDA  go_function DNA binding|GO:0003677||ISS  product AGD5 (ARF-GAP domain 5); ARF GTPase activator/ DNA binding / zinc ion binding  note ARF-GAP domain 5 (AGD5); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: AGD15 (ARF-GAP domain 15); ARF GTPase activator/ DNA binding / zinc ion binding (TAIR:AT3G17660.1); Has 3095 Blast hits to 2734 proteins in 172 species: Archae - 0; Bacteria - 12; Metazoa - 1592; Fungi - 429; Plants - 304; Viruses - 0; Other Eukaryotes - 758 (source: NCBI BLink).  protein_id AT5G54310.1p  transcript_id AT5G54310.1  protein_id AT5G54310.1p  transcript_id AT5G54310.1  
At5g54320	chr5:022062805	0.0	W/22062805-22063914	AT5G54320.1  CDS  gene_syn MDK4.14, MDK4_14  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54330.1); Has 139 Blast hits to 135 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G54320.1p  transcript_id AT5G54320.1  protein_id AT5G54320.1p  transcript_id AT5G54320.1  
At5g54330	chr5:022064993	0.0	W/22064993-22066063	AT5G54330.1  CDS  gene_syn MDK4.15, MDK4_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54320.1); Has 124 Blast hits to 122 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G54330.1p  transcript_id AT5G54330.1  protein_id AT5G54330.1p  transcript_id AT5G54330.1  
At5g54340	chr5:022066831	0.0	W/22066831-22067565	AT5G54340.1  CDS  gene_syn MDK4.16, MDK4_16  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) protein-related  note zinc finger (C2H2 type) protein-related; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein-related (TAIR:AT5G54360.1); Has 58 Blast hits to 57 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT5G54340.1p  transcript_id AT5G54340.1  protein_id AT5G54340.1p  transcript_id AT5G54340.1  
At5g54350	chr5:022070135	0.0	W/22070135-22070635,22070708-22070770,22070951-22071226	AT5G54350.1  CDS  gene_syn MDK4.17, MDK4_17  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein-related (TAIR:AT5G54360.1); Has 12 Blast hits to 12 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 1; Plants - 7; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G54350.1p  transcript_id AT5G54350.1  protein_id AT5G54350.1p  transcript_id AT5G54350.1  
At5g54360	chr5:022071862	0.0	W/22071862-22072674	AT5G54360.1  CDS  gene_syn MDK4.18, MDK4_18  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product zinc finger (C2H2 type) family protein-related  note zinc finger (C2H2 type) family protein-related; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54350.1); Has 113 Blast hits to 112 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G54360.1p  transcript_id AT5G54360.1  protein_id AT5G54360.1p  transcript_id AT5G54360.1  
At5g54365	chr5:022074406	0.0	W/22074406-22074478	AT5G54365.1  tRNA  gene_syn 67853.TRNA-PHE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Phe (anticodon: GAA)  transcript_id AT5G54365.1  
At5g54370	chr5:022075334	0.0	W/22075334-22075556,22075641-22075977,22076114-22076567	AT5G54370.1  CDS  gene_syn MDK4.20, MDK4_20  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product late embryogenesis abundant protein-related / LEA protein-related  note late embryogenesis abundant protein-related / LEA protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Root cap (InterPro:IPR009646); BEST Arabidopsis thaliana protein match is: late embryogenesis abundant protein-related / LEA protein-related (TAIR:AT4G27400.1); Has 106 Blast hits to 106 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 106; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G54370.1p  transcript_id AT5G54370.1  protein_id AT5G54370.1p  transcript_id AT5G54370.1  
At5g54375	chr5:022076862	0.0	W/22076862-22076934	AT5G54375.1  tRNA  gene_syn 67853.TRNA-PHE-2, 67854.TRNA-PHE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Phe (anticodon: GAA)  transcript_id AT5G54375.1  
At5g54380	chr5:022077313	0.0	C/22077313-22079880	AT5G54380.1  CDS  gene_syn GA469.3, GA469_3, THE1, THESEUS1  gene THE1  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component plasma membrane|GO:0005886|17540573|IDA  go_process protein amino acid autophosphorylation|GO:0046777|17540573|IDA  go_function protein kinase activity|GO:0004672|17540573|IDA  go_function kinase activity|GO:0016301||ISS  product THE1 (THESEUS1); kinase/ protein kinase  note THESEUS1 (THE1); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: protein amino acid autophosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT3G46290.1); Has 83452 Blast hits to 82490 proteins in 3283 species: Archae - 46; Bacteria - 7218; Metazoa - 37262; Fungi - 6478; Plants - 18497; Viruses - 351; Other Eukaryotes - 13600 (source: NCBI BLink).  protein_id AT5G54380.1p  transcript_id AT5G54380.1  protein_id AT5G54380.1p  transcript_id AT5G54380.1  
At5g54390	chr5:022086133	0.0	W/22086133-22086286,22086551-22087214,22087283-22087586	AT5G54390.1  CDS  gene_syn AHL, ARABIDOPSIS HAL2-LIKE, ATAHL, F24B18.1, F24B18_1  gene AHL  function Encodes a 3 -phosphoadenosine-5 -phosphate (PAP) phosphatase that is sensitive to physiological concentrations of Na+. It does not also act as inositol polyphosphate 1-phosphatases, which other members of the HAL2-like family do. It is proposed that AHL acts in concert with sulphotransferases to prevent both the toxicity of PAP on RNA processing enzymes as well as the product inhibition of PAP on sulphate conjugation.  go_process sulfur metabolic process|GO:0006790||IEA  go_component cellular_component|GO:0005575||ND  go_process sulfur metabolic process|GO:0006790||ISS  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437|10205895|IDA  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437||ISS  go_function 3 (2 ),5 -bisphosphate nucleotidase activity|GO:0008441|10205895|IDA  go_function 3 (2 ),5 -bisphosphate nucleotidase activity|GO:0008441||ISS  product AHL (ARABIDOPSIS HAL2-LIKE); 3 (2 ),5 -bisphosphate nucleotidase/ inositol or phosphatidylinositol phosphatase  note ARABIDOPSIS HAL2-LIKE (AHL); FUNCTIONS IN: 3 (2 ),5 -bisphosphate nucleotidase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: sulfur metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Inositol monophosphatase (InterPro:IPR000760), 3(2),5 -bisphosphate nucleotidase HAL2 (InterPro:IPR006239); BEST Arabidopsis thaliana protein match is: SAL1; 3 (2 ),5 -bisphosphate nucleotidase/ inositol or phosphatidylinositol phosphatase (TAIR:AT5G63980.1); Has 4311 Blast hits to 4311 proteins in 962 species: Archae - 31; Bacteria - 2308; Metazoa - 204; Fungi - 158; Plants - 138; Viruses - 0; Other Eukaryotes - 1472 (source: NCBI BLink).  protein_id AT5G54390.1p  transcript_id AT5G54390.1  protein_id AT5G54390.1p  transcript_id AT5G54390.1  
At5g54400	chr5:022090680	0.0	W/22090680-22091175,22091616-22091998	AT5G54400.1  CDS  gene_syn F24B18.2, F24B18_2  go_component plasma membrane|GO:0005886|17151019|IDA  go_process metabolic process|GO:0008152||IEA  go_function methyltransferase activity|GO:0008168||IEA  product methyltransferase  note methyltransferase; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: methyltransferase (TAIR:AT3G15530.2); Has 1855 Blast hits to 1855 proteins in 633 species: Archae - 75; Bacteria - 1529; Metazoa - 4; Fungi - 50; Plants - 28; Viruses - 0; Other Eukaryotes - 169 (source: NCBI BLink).  protein_id AT5G54400.1p  transcript_id AT5G54400.1  protein_id AT5G54400.1p  transcript_id AT5G54400.1  
At5g54410	chr5:022094247	0.0	C/22094247-22094906	AT5G54410.1  CDS  gene_syn F24B18.3, F24B18_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 48340 Blast hits to 19958 proteins in 1176 species: Archae - 114; Bacteria - 3973; Metazoa - 18841; Fungi - 3571; Plants - 1168; Viruses - 555; Other Eukaryotes - 20118 (source: NCBI BLink).  protein_id AT5G54410.1p  transcript_id AT5G54410.1  protein_id AT5G54410.1p  transcript_id AT5G54410.1  
At5g54420	chr5:022095804	0.0	W/22095804-22096079	AT5G54420.1  CDS  gene_syn F24B18.4, F24B18_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54450.1); Has 102 Blast hits to 100 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G54420.1p  transcript_id AT5G54420.1  protein_id AT5G54420.1p  transcript_id AT5G54420.1  
At5g54430	chr5:022098973	0.0	C/22098973-22099693,22097563-22097570	AT5G54430.1  CDS  gene_syn F24B18.5, F24B18_5  function Contains a universal stress protein domain. Protein is phosphorylated in response to Phytophthora infestans zoospores and xylanase.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process response to molecule of fungal origin|GO:0002238|18785823|IDA  go_process response to stress|GO:0006950||ISS  go_function molecular_function|GO:0003674||ND  product universal stress protein (USP) family protein  note universal stress protein (USP) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to molecule of fungal origin, response to stress; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: universal stress protein (USP) family protein (TAIR:AT4G27320.1); Has 591 Blast hits to 591 proteins in 94 species: Archae - 8; Bacteria - 126; Metazoa - 34; Fungi - 29; Plants - 392; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G54430.1p  transcript_id AT5G54430.1  protein_id AT5G54430.1p  transcript_id AT5G54430.1  
At5g54440	chr5:022100056	0.0	W/22100056-22100119,22100513-22100742,22101015-22101196,22101557-22101740,22102013-22102103,22102326-22102486,22102600-22102689,22102784-22102945,22103235-22103296,22103528-22103618,22103860-22104023,22104179-22104392,22104491-22105036,22105125-22105337,22105426-22105816,22105905-22105995,22106116-22106200,22106312-22106498,22106911-22107212,22107327-22107417,22107517-22107695	AT5G54440.1  CDS  gene_syn F24B18.6, F24B18_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 88 Blast hits to 72 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 10; Plants - 19; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G54440.1p  transcript_id AT5G54440.1  protein_id AT5G54440.1p  transcript_id AT5G54440.1  
At5g54450	chr5:022108273	0.0	C/22108273-22109379	AT5G54450.1  CDS  gene_syn F24B18.7, F24B18_7  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52940.1); Has 123 Blast hits to 121 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 123; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G54450.1p  transcript_id AT5G54450.1  protein_id AT5G54450.1p  transcript_id AT5G54450.1  
At5g54460	chr5:022110748	0.0	C/22110748-22110949,22110425-22110648	AT5G54460.1  CDS  gene_syn F24B18.8, F24B18_8  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product wound-responsive protein-related  note wound-responsive protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 1186 Blast hits to 525 proteins in 61 species: Archae - 14; Bacteria - 4; Metazoa - 881; Fungi - 40; Plants - 8; Viruses - 0; Other Eukaryotes - 239 (source: NCBI BLink).  protein_id AT5G54460.1p  transcript_id AT5G54460.1  protein_id AT5G54460.1p  transcript_id AT5G54460.1  
At5g54470	chr5:022114821	0.0	C/22114821-22115315,22114584-22114736	AT5G54470.1  CDS  gene_syn F24B18.9, F24B18_9  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (B-box type) family protein  note zinc finger (B-box type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: zinc finger (B-box type) family protein (TAIR:AT4G27310.1); Has 613 Blast hits to 602 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 7; Plants - 577; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT5G54470.1p  transcript_id AT5G54470.1  protein_id AT5G54470.1p  transcript_id AT5G54470.1  
At5g54480	chr5:022118004	0.0	W/22118004-22120166	AT5G54480.1  CDS  gene_syn F24B18.10, F24B18_10  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  product unknown protein  note unknown protein; INVOLVED IN: N-terminal protein myristoylation; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21740.1); Has 4422 Blast hits to 2032 proteins in 267 species: Archae - 17; Bacteria - 2601; Metazoa - 673; Fungi - 214; Plants - 267; Viruses - 24; Other Eukaryotes - 626 (source: NCBI BLink).  protein_id AT5G54480.1p  transcript_id AT5G54480.1  protein_id AT5G54480.1p  transcript_id AT5G54480.1  
At5g54490	chr5:022121458	0.0	W/22121458-22121841	AT5G54490.1  CDS  gene_syn F24B18.11, F24B18_11, PBP1, PINOID-BINDING PROTEIN 1  gene PBP1  function Encodes a PINOID (PID)-binding protein containing putative EF-hand calcium-binding motifs. The interaction is dependent on the presence of calcium. mRNA expression is up-regulated by auxin. Not a phosphorylation target of PID, likely acts upstream of PID to regulate the activity of this protein in response to changes in calcium levels.  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733|12857841|IEP  go_function calcium ion binding|GO:0005509|12857841|ISS  go_function calcium ion binding|GO:0005509||ISS  go_function protein binding|GO:0005515|12857841|IPI  product PBP1 (PINOID-BINDING PROTEIN 1); calcium ion binding / protein binding  note PINOID-BINDING PROTEIN 1 (PBP1); FUNCTIONS IN: protein binding, calcium ion binding; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT4G27280.1); Has 1909 Blast hits to 1908 proteins in 320 species: Archae - 0; Bacteria - 0; Metazoa - 885; Fungi - 126; Plants - 547; Viruses - 0; Other Eukaryotes - 351 (source: NCBI BLink).  protein_id AT5G54490.1p  transcript_id AT5G54490.1  protein_id AT5G54490.1p  transcript_id AT5G54490.1  
At5g54500	chr5:022124674	0.0	W/22124674-22124696,22125052-22125145,22125675-22125937,22126022-22126256	AT5G54500.1  CDS  gene_syn F24B18.12, F24B18_12, FLAVODOXIN-LIKE QUINONE REDUCTASE 1, FQR1  gene FQR1  function Encodes a flavin mononucleotide-binding flavodoxin-like quinone reductase that is a primary auxin-response gene.  go_component vacuole|GO:0005773|14760709|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to auxin stimulus|GO:0009733|11842161|IEP  go_process oxidation reduction|GO:0055114|11842161|IDA  go_function FMN binding|GO:0010181|11842161|IDA  go_function oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor|GO:0016655|11842161|IDA  product FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1); FMN binding / oxidoreductase, acting on NADH or NADPH, quinone or similar compound as acceptor  note FLAVODOXIN-LIKE QUINONE REDUCTASE 1 (FQR1); FUNCTIONS IN: FMN binding, oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor; INVOLVED IN: oxidation reduction, response to auxin stimulus; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Flavoprotein WrbA (InterPro:IPR010089), Flavodoxin/nitric oxide synthase (InterPro:IPR008254); BEST Arabidopsis thaliana protein match is: quinone reductase family protein (TAIR:AT4G27270.1); Has 2192 Blast hits to 2190 proteins in 674 species: Archae - 43; Bacteria - 1575; Metazoa - 2; Fungi - 180; Plants - 118; Viruses - 1; Other Eukaryotes - 273 (source: NCBI BLink).  protein_id AT5G54500.1p  transcript_id AT5G54500.1  protein_id AT5G54500.1p  transcript_id AT5G54500.1  
At5g54510	chr5:022133239	0.0	C/22133239-22133564,22132041-22132969,22131321-22131904	AT5G54510.1  CDS  gene_syn DFL1, DWARF IN LIGHT 1, F24B18.13, F24B18_13, GH3.6  gene DFL1  function Encodes an IAA-amido synthase that conjugates Ala, Asp, Phe, and Trp to auxin. Lines overexpressing this gene accumulate IAA-ASP and are hypersensitive to several auxins. Identified as a dominant mutation that displays shorter hypocotyls in light grown plants when compared to wild type siblings. Protein is similar to auxin inducible gene from pea (GH3).  go_component chloroplast|GO:0009507|15028209|IDA  go_component cytoplasm|GO:0005737|11169197|ISS  go_process response to auxin stimulus|GO:0009733|15659623|IMP  go_process response to auxin stimulus|GO:0009733||ISS  go_process auxin mediated signaling pathway|GO:0009734|11169197|IMP  go_process unidimensional cell growth|GO:0009826|11169197|IMP  go_process auxin homeostasis|GO:0010252|15659623|TAS  go_function indole-3-acetic acid amido synthetase activity|GO:0010279|15659623|IDA  product DFL1 (DWARF IN LIGHT 1); indole-3-acetic acid amido synthetase  note DWARF IN LIGHT 1 (DFL1); FUNCTIONS IN: indole-3-acetic acid amido synthetase activity; INVOLVED IN: auxin homeostasis, auxin mediated signaling pathway, response to auxin stimulus, unidimensional cell growth; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: WES1; indole-3-acetic acid amido synthetase (TAIR:AT4G27260.1); Has 752 Blast hits to 672 proteins in 107 species: Archae - 0; Bacteria - 223; Metazoa - 51; Fungi - 2; Plants - 220; Viruses - 0; Other Eukaryotes - 256 (source: NCBI BLink).  protein_id AT5G54510.1p  transcript_id AT5G54510.1  protein_id AT5G54510.1p  transcript_id AT5G54510.1  
At5g54520	chr5:022148738	0.0	C/22148738-22149089,22148452-22148616,22147873-22148357,22146781-22147152	AT5G54520.1  CDS  gene_syn MRB17.2, MRB17_2  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product WD-40 repeat family protein  note WD-40 repeat family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT1G10580.1); Has 17905 Blast hits to 12742 proteins in 467 species: Archae - 38; Bacteria - 2465; Metazoa - 8443; Fungi - 2995; Plants - 1496; Viruses - 0; Other Eukaryotes - 2468 (source: NCBI BLink).  protein_id AT5G54520.1p  transcript_id AT5G54520.1  protein_id AT5G54520.1p  transcript_id AT5G54520.1  
At5g54530	chr5:022152781	0.0	W/22152781-22153213,22154149-22154201	AT5G54530.1  CDS  gene_syn MRB17.3, MRB17_3  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61667.1); Has 239 Blast hits to 239 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 239; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G54530.1p  transcript_id AT5G54530.1  protein_id AT5G54530.1p  transcript_id AT5G54530.1  
At5g54531	chr5:022154730	0.0	W/22154730-22154894	AT5G54531.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G54531.1p  transcript_id AT5G54531.1  protein_id AT5G54531.1p  transcript_id AT5G54531.1  
At5g54540	chr5:022156604	0.0	W/22156604-22156935,22157078-22157252,22157379-22157472,22157565-22157857	AT5G54540.1  CDS  gene_syn MRB17.4, MRB17_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP012943 (InterPro:IPR016606); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25170.1); Has 60 Blast hits to 60 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G54540.1p  transcript_id AT5G54540.1  protein_id AT5G54540.1p  transcript_id AT5G54540.1  
At5g54550	chr5:022158401	0.0	W/22158401-22159480	AT5G54550.1  CDS  gene_syn MRB17.5, MRB17_5  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54560.1); Has 120 Blast hits to 119 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G54550.1p  transcript_id AT5G54550.1  protein_id AT5G54550.1p  transcript_id AT5G54550.1  
At5g54560	chr5:022161134	0.0	W/22161134-22162216	AT5G54560.1  CDS  gene_syn MRB17.6, MRB17_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54550.1); Has 121 Blast hits to 120 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G54560.1p  transcript_id AT5G54560.1  protein_id AT5G54560.1p  transcript_id AT5G54560.1  
At5g54569	chr5:022167349	0.0	W/22167349-22170538	AT5G54569.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT5G54570  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G54569.1  
At5g54570	chr5:022170089	0.0	C/22170089-22170235,22169924-22169993,22169792-22169850,22169545-22169620,22169304-22169463,22168963-22169218,22168774-22168889,22168460-22168683,22168340-22168371,22168146-22168248,22167963-22168071,22167636-22167891	AT5G54570.1  CDS  gene_syn BETA GLUCOSIDASE 41, BGLU41, MRB17.7, MRB17_7  gene BGLU41  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU41 (BETA GLUCOSIDASE 41); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 41 (BGLU41); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plant-type cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU40 (BETA GLUCOSIDASE 40); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G26560.1); Has 5767 Blast hits to 5505 proteins in 798 species: Archae - 102; Bacteria - 3123; Metazoa - 610; Fungi - 134; Plants - 855; Viruses - 0; Other Eukaryotes - 943 (source: NCBI BLink).  protein_id AT5G54570.1p  transcript_id AT5G54570.1  protein_id AT5G54570.1p  transcript_id AT5G54570.1  
At5g54580	chr5:022171332	0.0	W/22171332-22171515,22172158-22172226,22172329-22172435,22172546-22172656	AT5G54580.1  CDS  gene_syn MRB17.8, MRB17_8  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein, putative (TAIR:AT2G37510.1); Has 14940 Blast hits to 11861 proteins in 570 species: Archae - 2; Bacteria - 843; Metazoa - 8565; Fungi - 1644; Plants - 2501; Viruses - 0; Other Eukaryotes - 1385 (source: NCBI BLink).  protein_id AT5G54580.1p  transcript_id AT5G54580.1  protein_id AT5G54580.1p  transcript_id AT5G54580.1  
At5g54585	chr5:022175688	0.0	W/22175688-22176028,22176452-22176509	AT5G54585.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 9 Blast hits to 9 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G54585.1p  transcript_id AT5G54585.1  protein_id AT5G54585.1p  transcript_id AT5G54585.1  
At5g54590	chr5:022180480	0.0	W/22180480-22180796,22181022-22181175,22181405-22181531,22181713-22181798,22181885-22181956,22182038-22182241,22182336-22182698	AT5G54590.2  CDS  gene_syn MRB17.9, MRB17_9  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function ATP binding|GO:0005524||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase, putative (TAIR:AT5G15730.2); Has 89194 Blast hits to 87792 proteins in 3127 species: Archae - 50; Bacteria - 7709; Metazoa - 39674; Fungi - 6977; Plants - 19138; Viruses - 450; Other Eukaryotes - 15196 (source: NCBI BLink).  protein_id AT5G54590.2p  transcript_id AT5G54590.2  protein_id AT5G54590.2p  transcript_id AT5G54590.2  
At5g54590	chr5:022180480	0.0	W/22180480-22180796,22181022-22181175,22181405-22181531,22181713-22181900	AT5G54590.1  CDS  gene_syn MRB17.9, MRB17_9  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function ATP binding|GO:0005524||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase, putative (TAIR:AT5G15730.2); Has 26215 Blast hits to 26009 proteins in 701 species: Archae - 1; Bacteria - 350; Metazoa - 10142; Fungi - 794; Plants - 12532; Viruses - 90; Other Eukaryotes - 2306 (source: NCBI BLink).  protein_id AT5G54590.1p  transcript_id AT5G54590.1  protein_id AT5G54590.1p  transcript_id AT5G54590.1  
At5g54600	chr5:022183046	0.0	W/22183046-22183159,22183660-22183698,22183872-22184027,22184085-22184102,22184191-22184403	AT5G54600.2  CDS  gene_syn MRB17.10, MRB17_10  go_component chloroplast|GO:0009507|18431481|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 50S ribosomal protein L24, chloroplast  (CL24)  note 50S ribosomal protein L24, chloroplast (CL24); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: chloroplast, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Ribosomal protein L24/L26, conserved site (InterPro:IPR005825), KOW (InterPro:IPR005824), Ribosomal protein L24 (InterPro:IPR003256); BEST Arabidopsis thaliana protein match is: KOW domain-containing protein (TAIR:AT5G23535.1); Has 3478 Blast hits to 3478 proteins in 1197 species: Archae - 0; Bacteria - 2536; Metazoa - 33; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 848 (source: NCBI BLink).  protein_id AT5G54600.2p  transcript_id AT5G54600.2  protein_id AT5G54600.2p  transcript_id AT5G54600.2  
At5g54600	chr5:022183046	0.0	W/22183046-22183159,22183660-22183698,22183872-22184102,22184191-22184403	AT5G54600.1  CDS  gene_syn MRB17.10, MRB17_10  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 50S ribosomal protein L24, chloroplast  (CL24)  note 50S ribosomal protein L24, chloroplast (CL24); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: chloroplast stroma, chloroplast, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Ribosomal protein L24/L26, conserved site (InterPro:IPR005825), Ribosomal protein L24 (InterPro:IPR003256), KOW (InterPro:IPR005824); BEST Arabidopsis thaliana protein match is: KOW domain-containing protein (TAIR:AT5G23535.1); Has 4980 Blast hits to 4980 proteins in 1459 species: Archae - 0; Bacteria - 2986; Metazoa - 111; Fungi - 16; Plants - 68; Viruses - 0; Other Eukaryotes - 1799 (source: NCBI BLink).  protein_id AT5G54600.1p  transcript_id AT5G54600.1  protein_id AT5G54600.1p  transcript_id AT5G54600.1  
At5g54610	chr5:022186169	0.0	C/22186169-22186481,22185757-22186034,22184781-22185470	AT5G54610.1  CDS  gene_syn ANK, MRB17.11, MRB17_11, ankyrin  gene ANK  function Induced in response to Salicylic acid. Belongs to the ankyrin repeat protein family.  go_component cellular_component|GO:0005575||ND  go_process response to salicylic acid stimulus|GO:0009751|16307367|IEP  go_function protein binding|GO:0005515||ISS  product ANK (ankyrin); protein binding  note ankyrin (ANK); FUNCTIONS IN: protein binding; INVOLVED IN: response to salicylic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT5G54620.1); Has 13961 Blast hits to 7099 proteins in 309 species: Archae - 10; Bacteria - 837; Metazoa - 8006; Fungi - 457; Plants - 947; Viruses - 64; Other Eukaryotes - 3640 (source: NCBI BLink).  protein_id AT5G54610.1p  transcript_id AT5G54610.1  protein_id AT5G54610.1p  transcript_id AT5G54610.1  
At5g54620	chr5:022189434	0.0	C/22189434-22189746,22188674-22188961,22187761-22188455	AT5G54620.1  CDS  gene_syn MRB17.12, MRB17_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ANK (ankyrin); protein binding (TAIR:AT5G54610.1); Has 14178 Blast hits to 7060 proteins in 340 species: Archae - 6; Bacteria - 759; Metazoa - 7709; Fungi - 448; Plants - 1012; Viruses - 62; Other Eukaryotes - 4182 (source: NCBI BLink).  protein_id AT5G54620.1p  transcript_id AT5G54620.1  protein_id AT5G54620.1p  transcript_id AT5G54620.1  
At5g54630	chr5:022193495	0.0	C/22193495-22194260,22192607-22193259	AT5G54630.1  CDS  gene_syn MRB17.13, MRB17_13  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product zinc finger protein-related  note zinc finger protein-related; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT4G27240.1); Has 141 Blast hits to 141 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 16; Plants - 107; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G54630.1p  transcript_id AT5G54630.1  protein_id AT5G54630.1p  transcript_id AT5G54630.1  
At5g54640	chr5:022196540	0.0	W/22196540-22196728,22197076-22197279	AT5G54640.1  CDS  gene_syn HTA1, MRB17.14, MRB17_14, RAT5, RESISTANT TO AGROBACTERIUM TRANSFORMATION 5  gene RAT5  function Isolated from T-DNA insertion line, the rat5 mutant is deficient in T-DNA integration. Encodes histone2A protein.  go_component nucleolus|GO:0005730|15496452|IDA  go_function DNA binding|GO:0003677||IEA  go_process DNA mediated transformation|GO:0009294|16751347|IMP  go_process response to wounding|GO:0009611|16751347|IEP  go_process response to bacterium|GO:0009617|16751347|IEP  go_function DNA binding|GO:0003677||ISS  product RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5); DNA binding  note RESISTANT TO AGROBACTERIUM TRANSFORMATION 5 (RAT5); FUNCTIONS IN: DNA binding; INVOLVED IN: DNA mediated transformation, response to wounding, response to bacterium; LOCATED IN: nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: HTA2 (histone H2A); DNA binding (TAIR:AT4G27230.1); Has 3285 Blast hits to 3285 proteins in 308 species: Archae - 0; Bacteria - 0; Metazoa - 2203; Fungi - 252; Plants - 450; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink).  protein_id AT5G54640.1p  transcript_id AT5G54640.1  protein_id AT5G54640.1p  transcript_id AT5G54640.1  
At5g54650	chr5:022201476	0.0	C/22201476-22201649,22200167-22200785,22199464-22200079,22199174-22199373,22198837-22199072,22197856-22198713	AT5G54650.1  CDS  gene_syn ATFH5, FORMIN HOMOLOGY 2 DOMAIN-CONTAINING PROTEIN 5, FORMIN HOMOLOGY 5, FORMIN HOMOLOGY5, Fh5, MRB17.15, MRB17_15  gene Fh5  function Encodes a protein with similarity to formins that is involved in cytokinesis. Loss of function mutations exhibit delayed cellularization during endosperm development. FH5 is expressed in the endosperm and the protein localizes to the cell plate.  go_component cell wall|GO:0005618|15469496|IDA  go_component cytoplasm|GO:0005737|15469496|IDA  go_component phragmoplast|GO:0009524|15469496|IDA  go_process endosperm development|GO:0009960|15765105|IMP  go_process actin filament polymerization|GO:0030041|15765105|IDA  go_process actin nucleation|GO:0045010|15765105|IDA  go_function actin binding|GO:0003779|12417149|ISS  go_function actin binding|GO:0003779|15256004|ISS  go_function actin binding|GO:0003779|15765105|ISS  go_function actin binding|GO:0003779||ISS  product Fh5 (FORMIN HOMOLOGY5); actin binding  note FORMIN HOMOLOGY5 (Fh5); FUNCTIONS IN: actin binding; INVOLVED IN: actin nucleation, actin filament polymerization, endosperm development; LOCATED IN: cell wall, phragmoplast, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding FH2 and DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: formin homology 2 domain-containing protein / FH2 domain-containing protein (TAIR:AT3G05470.1); Has 66682 Blast hits to 30340 proteins in 1252 species: Archae - 110; Bacteria - 10393; Metazoa - 25938; Fungi - 6608; Plants - 11728; Viruses - 2899; Other Eukaryotes - 9006 (source: NCBI BLink).  protein_id AT5G54650.1p  transcript_id AT5G54650.1  protein_id AT5G54650.1p  transcript_id AT5G54650.1  
At5g54650	chr5:022201476	0.0	C/22201476-22201649,22200167-22200785,22199464-22200079,22199174-22199373,22198837-22199072,22197856-22198713	AT5G54650.2  CDS  gene_syn ATFH5, FORMIN HOMOLOGY 2 DOMAIN-CONTAINING PROTEIN 5, FORMIN HOMOLOGY 5, FORMIN HOMOLOGY5, Fh5, MRB17.15, MRB17_15  gene Fh5  function Encodes a protein with similarity to formins that is involved in cytokinesis. Loss of function mutations exhibit delayed cellularization during endosperm development. FH5 is expressed in the endosperm and the protein localizes to the cell plate.  go_component cell wall|GO:0005618|15469496|IDA  go_component cytoplasm|GO:0005737|15469496|IDA  go_component phragmoplast|GO:0009524|15469496|IDA  go_process endosperm development|GO:0009960|15765105|IMP  go_process actin filament polymerization|GO:0030041|15765105|IDA  go_process actin nucleation|GO:0045010|15765105|IDA  go_function actin binding|GO:0003779|12417149|ISS  go_function actin binding|GO:0003779|15256004|ISS  go_function actin binding|GO:0003779|15765105|ISS  go_function actin binding|GO:0003779||ISS  product Fh5 (FORMIN HOMOLOGY5); actin binding  note FORMIN HOMOLOGY5 (Fh5); FUNCTIONS IN: actin binding; INVOLVED IN: actin nucleation, actin filament polymerization, endosperm development; LOCATED IN: cell wall, phragmoplast, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding FH2 and DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: formin homology 2 domain-containing protein / FH2 domain-containing protein (TAIR:AT3G05470.1); Has 66682 Blast hits to 30340 proteins in 1252 species: Archae - 110; Bacteria - 10393; Metazoa - 25938; Fungi - 6608; Plants - 11728; Viruses - 2899; Other Eukaryotes - 9006 (source: NCBI BLink).  protein_id AT5G54650.2p  transcript_id AT5G54650.2  protein_id AT5G54650.2p  transcript_id AT5G54650.2  
At5g54660	chr5:022203950	0.0	W/22203950-22204265,22204724-22204986	AT5G54660.1  CDS  gene_syn MRB17.16, MRB17_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product heat shock protein-related  note heat shock protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) (TAIR:AT1G53540.1); Has 528 Blast hits to 528 proteins in 75 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 34; Plants - 464; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT5G54660.1p  transcript_id AT5G54660.1  protein_id AT5G54660.1p  transcript_id AT5G54660.1  
At5g54661	chr5:022205310	0.0	W/22205310-22205758	AT5G54661.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G54660; heat shock protein-related  
At5g54670	chr5:022209912	0.0	W/22209912-22210106,22210576-22210720,22210796-22210905,22210986-22211105,22211187-22211390,22211475-22211651,22211737-22211811,22211903-22212049,22212131-22212269,22212355-22212464,22212550-22212711,22212813-22213021,22213124-22213205,22213285-22213389,22213468-22213572,22213664-22213843	AT5G54670.1  CDS  gene_syn ARABIDOPSIS THALIANA KINESIN 3, ATK3, KATC, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, MRB17.18  gene ATK3  function Encodes a truncated KatC polypeptide (KatC(207-754)), which includes the carboxyl-terminal region of KatC. This was expressed in Escherichia coli and was shown to possess microtubule-stimulated ATPase activity.  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||ISS  go_function microtubule binding|GO:0008017|8075402|IDA  go_function ATPase activity|GO:0016887|8075402|IDA  product ATK3 (ARABIDOPSIS THALIANA KINESIN 3); ATPase/ microtubule binding / microtubule motor  note ARABIDOPSIS THALIANA KINESIN 3 (ATK3); FUNCTIONS IN: microtubule binding, microtubule motor activity, ATPase activity; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATK2 (ARABIDOPSIS THALIANA KINESIN 2); microtubule binding / microtubule motor (TAIR:AT4G27180.1); Has 52282 Blast hits to 31363 proteins in 1381 species: Archae - 522; Bacteria - 4151; Metazoa - 28260; Fungi - 3907; Plants - 2147; Viruses - 317; Other Eukaryotes - 12978 (source: NCBI BLink).  protein_id AT5G54670.1p  transcript_id AT5G54670.1  protein_id AT5G54670.1p  transcript_id AT5G54670.1  
At5g54680	chr5:022217270	0.0	W/22217270-22217397,22218050-22218112,22218329-22218406,22218486-22218648,22218721-22218993	AT5G54680.1  CDS  gene_syn ILR3, K5F14.2, K5F14_2, iaa-leucine resistant3  gene ILR3  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product ILR3 (iaa-leucine resistant3); DNA binding / transcription factor  note iaa-leucine resistant3 (ILR3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT1G51070.1); Has 563 Blast hits to 555 proteins in 74 species: Archae - 4; Bacteria - 10; Metazoa - 69; Fungi - 13; Plants - 431; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT5G54680.1p  transcript_id AT5G54680.1  protein_id AT5G54680.1p  transcript_id AT5G54680.1  
At5g54690	chr5:022221556	0.0	C/22221556-22221769,22221037-22221092,22220189-22220938,22219805-22220107,22219435-22219719	AT5G54690.1  CDS  gene_syn GALACTURONOSYLTRANSFERASE 12, GAUT12, IRREGULAR XYLEM 8, IRX8, K5F14.3, K5F14_3, LGT6  gene GAUT12  function Encodes a protein with putative galacturonosyltransferase activity. Mutants defective in this gene displayed a notable reduction in xylose (>50%) in the cell walls from stems and roots and a reduction in cellulose (~25%).  go_component Golgi apparatus|GO:0005794|17322407|IDA  go_process cell wall organization|GO:0007047|17237350|IMP  go_process glucuronoxylan metabolic process|GO:0010413|17322407|IMP  go_process glucuronoxylan biosynthetic process|GO:0010417|17237350|IMP  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_process xylan biosynthetic process|GO:0045492|17237350|TAS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS  product GAUT12 (GALACTURONOSYLTRANSFERASE 12); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note GALACTURONOSYLTRANSFERASE 12 (GAUT12); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: glucuronoxylan metabolic process, carbohydrate biosynthetic process, xylan biosynthetic process, cell wall organization, glucuronoxylan biosynthetic process; LOCATED IN: Golgi apparatus; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: GAUT13 (Galacturonosyltransferase 13); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT3G01040.2); Has 685 Blast hits to 681 proteins in 94 species: Archae - 0; Bacteria - 111; Metazoa - 121; Fungi - 6; Plants - 431; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT5G54690.1p  transcript_id AT5G54690.1  protein_id AT5G54690.1p  transcript_id AT5G54690.1  
At5g54700	chr5:022225321	0.0	C/22225321-22225509,22224911-22225237,22223959-22224469,22223096-22223511	AT5G54700.1  CDS  gene_syn K5F14.4, K5F14_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT5G50140.1); Has 1720 Blast hits to 1315 proteins in 106 species: Archae - 0; Bacteria - 81; Metazoa - 544; Fungi - 63; Plants - 856; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).  protein_id AT5G54700.1p  transcript_id AT5G54700.1  protein_id AT5G54700.1p  transcript_id AT5G54700.1  
At5g54710	chr5:022230359	0.0	C/22230359-22230500,22229719-22230105,22229122-22229546,22227665-22228507	AT5G54710.1  CDS  gene_syn K5F14.6, K5F14_6  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT1G34050.1); Has 16939 Blast hits to 9219 proteins in 387 species: Archae - 12; Bacteria - 964; Metazoa - 10080; Fungi - 806; Plants - 1290; Viruses - 139; Other Eukaryotes - 3648 (source: NCBI BLink).  protein_id AT5G54710.1p  transcript_id AT5G54710.1  protein_id AT5G54710.1p  transcript_id AT5G54710.1  
At5g54720	chr5:022232295	0.0	C/22232295-22232852	AT5G54720.1  CDS  gene_syn K5F14.7, K5F14_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT5G54710.1); Has 165 Blast hits to 155 proteins in 46 species: Archae - 0; Bacteria - 19; Metazoa - 47; Fungi - 10; Plants - 52; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT5G54720.1p  transcript_id AT5G54720.1  protein_id AT5G54720.1p  transcript_id AT5G54720.1  
At5g54730	chr5:022236625	0.0	C/22236625-22236804,22236089-22236508,22235616-22235999,22235297-22235527,22234504-22235223,22234254-22234423,22233977-22234163	AT5G54730.1  CDS  gene_syn AtATG18f, K5F14.9, K5F14_9  gene AtATG18f  go_component chloroplast|GO:0009507||IEA  go_process response to starvation|GO:0042594|15860012|IEP  go_function molecular_function|GO:0003674||ND  product AtATG18f  note AtATG18f; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to starvation; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: AtATG18g (TAIR:AT1G03380.1); Has 779 Blast hits to 776 proteins in 146 species: Archae - 0; Bacteria - 2; Metazoa - 402; Fungi - 213; Plants - 89; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT5G54730.1p  transcript_id AT5G54730.1  protein_id AT5G54730.1p  transcript_id AT5G54730.1  
At5g54740	chr5:022238640	0.0	C/22238640-22239137	AT5G54740.1  CDS  gene_syn K5F14.10, K5F14_10  go_component endomembrane system|GO:0012505||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process lipid transport|GO:0006869||ISS  go_process pollen development|GO:0009555|19237690|IMP  go_function lipid binding|GO:0008289||ISS  go_function nutrient reservoir activity|GO:0045735||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding, nutrient reservoir activity; INVOLVED IN: lipid transport, pollen development; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex; CONTAINS InterPro DOMAIN/s: Bifunctional trypsin/alpha-amylase inhibitor (InterPro:IPR013771), Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Napin/ Bra allergen (InterPro:IPR000617), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: 2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1 (TAIR:AT4G27140.1); Has 188 Blast hits to 181 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 187; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G54740.1p  transcript_id AT5G54740.1  protein_id AT5G54740.1p  transcript_id AT5G54740.1  
At5g54745	chr5:022241124	0.0	C/22241124-22241233,22240928-22241034,22240692-22240812,22240575-22240639,22240256-22240449	AT5G54745.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type endopeptidase activity|GO:0004252||ISS  product DegP protease family  note DegP protease family; FUNCTIONS IN: catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Serine endopeptidase DegP2 (InterPro:IPR015724), Peptidase, trypsin-like serine and cysteine (InterPro:IPR009003); BEST Arabidopsis thaliana protein match is: DegP6 (DegP protease 6); catalytic/ serine-type endopeptidase/ serine-type peptidase (TAIR:AT1G51150.1); Has 795 Blast hits to 794 proteins in 261 species: Archae - 10; Bacteria - 445; Metazoa - 22; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 228 (source: NCBI BLink).  protein_id AT5G54745.1p  transcript_id AT5G54745.1  protein_id AT5G54745.1p  transcript_id AT5G54745.1  
At5g54750	chr5:022242080	0.0	W/22242080-22242136,22242404-22242501,22242751-22242850,22243087-22243269,22243355-22243477	AT5G54750.1  CDS  gene_syn MBG8.1, MBG8_1  go_component cellular_component|GO:0005575||ND  go_process ER to Golgi vesicle-mediated transport|GO:0006888||ISS  go_function molecular_function|GO:0003674||ND  product transport protein particle (TRAPP) component Bet3, putative  note transport protein particle (TRAPP) component Bet3, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ER to Golgi vesicle-mediated transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transport protein particle (TRAPP) component (InterPro:IPR007194), TRAPP I complex, Bet3 (InterPro:IPR016721); Has 335 Blast hits to 335 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 140; Fungi - 95; Plants - 37; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT5G54750.1p  transcript_id AT5G54750.1  protein_id AT5G54750.1p  transcript_id AT5G54750.1  
At5g54760	chr5:022244732	0.0	W/22244732-22244768,22244957-22245162,22245325-22245378,22245473-22245517	AT5G54760.1  CDS  gene_syn MBG8.2, MBG8_2  go_process translation|GO:0006412||IEA  go_process translational initiation|GO:0006413||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_component cellular_component|GO:0005575||ND  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product eukaryotic translation initiation factor SUI1, putative  note eukaryotic translation initiation factor SUI1, putative; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation, translation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor SUI1 (InterPro:IPR001950), Eukaryotic translation initiation factor SUI1 (InterPro:IPR005874); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor SUI1, putative (TAIR:AT4G27130.1); Has 617 Blast hits to 614 proteins in 200 species: Archae - 6; Bacteria - 1; Metazoa - 295; Fungi - 106; Plants - 120; Viruses - 3; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT5G54760.1p  transcript_id AT5G54760.1  protein_id AT5G54760.1p  transcript_id AT5G54760.1  
At5g54760	chr5:022244732	0.0	W/22244732-22244768,22244957-22245162,22245325-22245378,22245473-22245517	AT5G54760.2  CDS  gene_syn MBG8.2, MBG8_2  go_process translation|GO:0006412||IEA  go_process translational initiation|GO:0006413||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_component cellular_component|GO:0005575||ND  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product eukaryotic translation initiation factor SUI1, putative  note eukaryotic translation initiation factor SUI1, putative; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation, translation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor SUI1 (InterPro:IPR001950), Eukaryotic translation initiation factor SUI1 (InterPro:IPR005874); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor SUI1, putative (TAIR:AT4G27130.1); Has 617 Blast hits to 614 proteins in 200 species: Archae - 6; Bacteria - 1; Metazoa - 295; Fungi - 106; Plants - 120; Viruses - 3; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT5G54760.2p  transcript_id AT5G54760.2  protein_id AT5G54760.2p  transcript_id AT5G54760.2  
At5g54770	chr5:022246634	0.0	W/22246634-22247032,22247156-22247644,22247730-22247891	AT5G54770.1  CDS  gene_syn MBG8.3, MBG8_3, THI1, THI1 PROTEIN, THI4, THIAMINE4, THIAZOLE REQUIRING, TZ  gene THI1  function Encodes a thiamine biosynthetic gene that has a dual function in thiamine biosynthesis and mitochondrial DNA damage tolerance. It appears to be involved in producing the thiazole portion of thiamine (vitamin B1). A crystal structure of the protein reveals that it forms a 2-ring homo-octamer.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component mitochondrion|GO:0005739|11575719|IDA  go_component chloroplast|GO:0009507|11575719|IDA  go_component stromule|GO:0010319|16923014|IDA  go_process response to DNA damage stimulus|GO:0006974|9367751|IMP  go_process thiamin biosynthetic process|GO:0009228|8790291|IGI  go_process thiamin biosynthetic process|GO:0009228|9367751|TAS  go_process response to cold|GO:0009409|16923014|IEP  go_process oxazole or thiazole biosynthetic process|GO:0018131|8790291|IGI  go_process oxazole or thiazole biosynthetic process|GO:0018131||IMP  go_function protein homodimerization activity|GO:0042803|16912043|IPI  product THI1; protein homodimerization  note THI1; FUNCTIONS IN: protein homodimerization activity; INVOLVED IN: oxazole or thiazole biosynthetic process, response to cold, thiamin biosynthetic process, response to DNA damage stimulus; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thiamine biosynthesis Thi4 protein (InterPro:IPR002922); Has 427 Blast hits to 425 proteins in 173 species: Archae - 123; Bacteria - 61; Metazoa - 1; Fungi - 120; Plants - 96; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT5G54770.1p  transcript_id AT5G54770.1  protein_id AT5G54770.1p  transcript_id AT5G54770.1  
At5g54780	chr5:022251603	0.0	C/22251603-22251692,22250839-22250934,22250544-22250647,22250299-22250438,22250123-22250215,22249917-22250039,22249731-22249819,22249525-22249630,22249327-22249424,22248953-22249216,22248794-22248877,22248696-22248707	AT5G54780.1  CDS  gene_syn MBG8.4, MBG8_4  go_process regulation of Rab GTPase activity|GO:0032313||IEA  go_function RAB GTPase activator activity|GO:0005097||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  product RAB GTPase activator  note RAB GTPase activator; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: RAB GTPase activator (TAIR:AT4G27100.2); Has 3130 Blast hits to 3067 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 1973; Fungi - 466; Plants - 319; Viruses - 0; Other Eukaryotes - 372 (source: NCBI BLink).  protein_id AT5G54780.1p  transcript_id AT5G54780.1  protein_id AT5G54780.1p  transcript_id AT5G54780.1  
At5g54790	chr5:022255166	0.0	C/22255166-22255489,22254416-22254481,22254195-22254302	AT5G54790.1  CDS  gene_syn MBG8.5, MBG8_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf lamina base, shoot apex, hypocotyl, leaf; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G50930.1); Has 20 Blast hits to 20 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G54790.1p  transcript_id AT5G54790.1  protein_id AT5G54790.1p  transcript_id AT5G54790.1  
At5g54800	chr5:022261408	0.0	W/22261408-22261899,22262282-22262507,22262624-22262846,22263101-22263314,22263551-22263562	AT5G54800.1  CDS  gene_syn GPT1  gene GPT1  function glucose6-Phosphate/phosphate transporter 1  go_component chloroplast|GO:0009507||IEA  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process response to nematode|GO:0009624|16478044|IEP  go_function glucose-6-phosphate transmembrane transporter activity|GO:0015152||ISS  go_function antiporter activity|GO:0015297||ISS  product GPT1; antiporter/ glucose-6-phosphate transmembrane transporter  note GPT1; FUNCTIONS IN: antiporter activity, glucose-6-phosphate transmembrane transporter activity; INVOLVED IN: response to nematode; LOCATED IN: integral to membrane, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853), Tpt phosphate/phosphoenolpyruvate translocator (InterPro:IPR004696); BEST Arabidopsis thaliana protein match is: GPT2; antiporter/ glucose-6-phosphate transmembrane transporter (TAIR:AT1G61800.1); Has 1692 Blast hits to 1691 proteins in 260 species: Archae - 4; Bacteria - 75; Metazoa - 454; Fungi - 234; Plants - 746; Viruses - 0; Other Eukaryotes - 179 (source: NCBI BLink).  protein_id AT5G54800.1p  transcript_id AT5G54800.1  protein_id AT5G54800.1p  transcript_id AT5G54800.1  
At5g54810	chr5:022266397	0.0	C/22266397-22266738,22265790-22266146,22265264-22265706,22265077-22265171,22264805-22264980	AT5G54810.1  CDS  gene_syn ATTSB1, MBG8.7, MBG8_7, TRP2, TRPB, TRYPTOPHAN BIOSYNTHESIS 2, TRYPTOPHAN BIOSYNTHESIS B, TRYPTOPHAN SYNTHASE BETA-SUBUNIT 1, TSB1  gene TSB1  function A.thaliana tryptophan synthase beta subunit (trpB)  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component chloroplast|GO:0009507|1840915|ISS  go_process tryptophan biosynthetic process|GO:0000162|2734310|TAS  go_process response to oxidative stress|GO:0006979|9501110|IEP  go_process indoleacetic acid biosynthetic process|GO:0009684|8234297|TAS  go_function tryptophan synthase activity|GO:0004834|1840915|IDA  go_function tryptophan synthase activity|GO:0004834|1840915|IMP  product TSB1 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 1); tryptophan synthase  note TRYPTOPHAN SYNTHASE BETA-SUBUNIT 1 (TSB1); FUNCTIONS IN: tryptophan synthase activity; INVOLVED IN: tryptophan biosynthetic process, response to oxidative stress, response to salt stress, indoleacetic acid biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: guard cell, root; CONTAINS InterPro DOMAIN/s: Tryptophan synthase, beta chain (InterPro:IPR006654), Tryptophan synthase, beta chain, conserved site (InterPro:IPR006653), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926); BEST Arabidopsis thaliana protein match is: TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2); tryptophan synthase (TAIR:AT4G27070.1); Has 8901 Blast hits to 8901 proteins in 1483 species: Archae - 265; Bacteria - 4273; Metazoa - 10; Fungi - 152; Plants - 73; Viruses - 0; Other Eukaryotes - 4128 (source: NCBI BLink).  protein_id AT5G54810.1p  transcript_id AT5G54810.1  protein_id AT5G54810.1p  transcript_id AT5G54810.1  
At5g54820	chr5:022269859	0.0	W/22269859-22270794,22271209-22271382,22271469-22271777	AT5G54820.1  CDS  gene_syn MBG8.8, MBG8_8  go_component endomembrane system|GO:0012505||IEA  product F-box family protein  note F-box family protein; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G56400.1); Has 1105 Blast hits to 1084 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1103; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G54820.1p  transcript_id AT5G54820.1  protein_id AT5G54820.1p  transcript_id AT5G54820.1  
At5g54830	chr5:022273394	0.0	W/22273394-22276117	AT5G54830.1  CDS  gene_syn MBG8.9, MBG8_9  go_component endomembrane system|GO:0012505||IEA  go_process histidine catabolic process|GO:0006548||IEA  go_function dopamine beta-monooxygenase activity|GO:0004500||IEA  go_process metabolic process|GO:0008152||ISS  go_function monooxygenase activity|GO:0004497||ISS  product DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein  note DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein; FUNCTIONS IN: dopamine beta-monooxygenase activity, monooxygenase activity; INVOLVED IN: histidine catabolic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: DOMON related (InterPro:IPR005018), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593), DOMON (InterPro:IPR013050); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17280.1); Has 504 Blast hits to 475 proteins in 78 species: Archae - 2; Bacteria - 12; Metazoa - 256; Fungi - 12; Plants - 210; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT5G54830.1p  transcript_id AT5G54830.1  protein_id AT5G54830.1p  transcript_id AT5G54830.1  
At5g54840	chr5:022277975	0.0	C/22277975-22278328,22277760-22277877,22277545-22277644,22277361-22277436	AT5G54840.2  CDS  gene_syn ATSGP1, MBG8.10, MBG8_10, SGP1  gene SGP1  function Monomeric G protein. Expressed in the root quiescent center, flowers, and leaf guard cells and hydathodes.  go_component intracellular|GO:0005622||IEA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product SGP1; GTP binding  note SGP1; FUNCTIONS IN: GTP binding; INVOLVED IN: small GTPase mediated signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Miro-like (InterPro:IPR013684), Small GTPase, Tem1 (InterPro:IPR017231); BEST Arabidopsis thaliana protein match is: SGP2; GTP binding (TAIR:AT3G21700.3); Has 7179 Blast hits to 7174 proteins in 296 species: Archae - 2; Bacteria - 2; Metazoa - 3803; Fungi - 777; Plants - 931; Viruses - 0; Other Eukaryotes - 1664 (source: NCBI BLink).  protein_id AT5G54840.2p  transcript_id AT5G54840.2  protein_id AT5G54840.2p  transcript_id AT5G54840.2  
At5g54840	chr5:022277975	0.0	C/22277975-22278328,22277760-22277877,22277545-22277644,22277397-22277436,22276933-22277016,22276611-22276781	AT5G54840.1  CDS  gene_syn ATSGP1, MBG8.10, MBG8_10, SGP1  gene SGP1  function Monomeric G protein. Expressed in the root quiescent center, flowers, and leaf guard cells and hydathodes.  go_component intracellular|GO:0005622||IEA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product SGP1; GTP binding  note SGP1; FUNCTIONS IN: GTP binding; INVOLVED IN: small GTPase mediated signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Miro-like (InterPro:IPR013684), Small GTPase, Tem1 (InterPro:IPR017231); BEST Arabidopsis thaliana protein match is: SGP2; GTP binding (TAIR:AT3G21700.3); Has 10407 Blast hits to 10398 proteins in 343 species: Archae - 2; Bacteria - 17; Metazoa - 5314; Fungi - 1000; Plants - 1460; Viruses - 3; Other Eukaryotes - 2611 (source: NCBI BLink).  protein_id AT5G54840.1p  transcript_id AT5G54840.1  protein_id AT5G54840.1p  transcript_id AT5G54840.1  
At5g54850	chr5:022280755	0.0	C/22280755-22281363	AT5G54850.1  CDS  gene_syn MBG8.11, MBG8_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; Has 26 Blast hits to 22 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 14; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G54850.1p  transcript_id AT5G54850.1  protein_id AT5G54850.1p  transcript_id AT5G54850.1  
At5g54855	chr5:022282902	0.0	W/22282902-22283061,22283971-22284251	AT5G54855.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pollen Ole e 1 allergen and extensin family protein  note pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen and extensin (InterPro:IPR006041); Has 22 Blast hits to 22 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G54855.1p  transcript_id AT5G54855.1  protein_id AT5G54855.1p  transcript_id AT5G54855.1  
At5g54860	chr5:022284721	0.0	W/22284721-22284801,22285185-22285312,22285414-22285635,22285731-22286174,22286258-22286455,22286544-22286681,22286761-22287025	AT5G54860.1  CDS  gene_syn MBG8.12, MBG8_12  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product integral membrane transporter family protein  note integral membrane transporter family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily, general substrate transporter (InterPro:IPR016196), Biopterin transport-related protein BT1 (InterPro:IPR004324); BEST Arabidopsis thaliana protein match is: integral membrane transporter family protein (TAIR:AT1G64890.1); Has 636 Blast hits to 542 proteins in 109 species: Archae - 2; Bacteria - 124; Metazoa - 4; Fungi - 2; Plants - 156; Viruses - 0; Other Eukaryotes - 348 (source: NCBI BLink).  protein_id AT5G54860.1p  transcript_id AT5G54860.1  protein_id AT5G54860.1p  transcript_id AT5G54860.1  
At5g54865	chr5:022287626	0.0	C/22287626-22287697	AT5G54865.1  tRNA  gene_syn 67858.TRNA-MET-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Met (anticodon: CAT)  transcript_id AT5G54865.1  
At5g54870	chr5:022289149	0.0	W/22289149-22289481,22289785-22289925,22290020-22290385,22290468-22290713,22290806-22290898,22291102-22291302,22291389-22291604	AT5G54870.1  CDS  gene_syn MBG8.14, MBG8_14  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27020.1); Has 70 Blast hits to 70 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT5G54870.1p  transcript_id AT5G54870.1  protein_id AT5G54870.1p  transcript_id AT5G54870.1  
At5g54880	chr5:022291920	0.0	W/22291920-22293104	AT5G54880.1  CDS  gene_syn MBG8.15, MBG8_15  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DTW domain-containing protein  note DTW domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DTW (InterPro:IPR005636); Has 518 Blast hits to 450 proteins in 183 species: Archae - 0; Bacteria - 364; Metazoa - 76; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT5G54880.1p  transcript_id AT5G54880.1  protein_id AT5G54880.1p  transcript_id AT5G54880.1  
At5g54890	chr5:022293346	0.0	W/22293346-22293844,22294081-22294208,22294285-22294510,22294595-22294722,22294814-22294909	AT5G54890.1  CDS  gene_syn MBG8.16, MBG8_16  go_function RNA binding|GO:0003723||IEA  go_process biological_process|GO:0008150||ND  product RNA binding  note RNA binding; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, F mature embryo stage, C globular stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA binding (TAIR:AT4G31010.1); Has 160 Blast hits to 148 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G54890.1p  transcript_id AT5G54890.1  protein_id AT5G54890.1p  transcript_id AT5G54890.1  
At5g54900	chr5:022295412	0.0	W/22295412-22295666,22295815-22296283,22297326-22297384,22297473-22297603,22297684-22297777,22297881-22298033,22298124-22298126	AT5G54900.1  CDS  gene_syn ATRBP45A, RNA-binding protein 45A  gene ATRBP45A  go_function RNA binding|GO:0003723|11105760|ISS  product ATRBP45A (RNA-binding protein 45A); RNA binding  note RNA-binding protein 45A (ATRBP45A); FUNCTIONS IN: RNA binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: ATRBP45C; RNA binding (TAIR:AT4G27000.1); Has 26274 Blast hits to 15473 proteins in 616 species: Archae - 10; Bacteria - 1663; Metazoa - 15334; Fungi - 2743; Plants - 3912; Viruses - 0; Other Eukaryotes - 2612 (source: NCBI BLink).  protein_id AT5G54900.1p  transcript_id AT5G54900.1  protein_id AT5G54900.1p  transcript_id AT5G54900.1  
At5g54910	chr5:022301336	0.0	C/22301336-22301719,22300953-22301228,22300369-22300692,22300060-22300251,22299825-22299980,22299332-22299744,22299087-22299238,22298668-22298990	AT5G54910.1  CDS  gene_syn MBG8.18, MBG8_18  go_component nucleolus|GO:0005730|15496452|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_process biological_process|GO:0008150||ND  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD/DEAH box helicase, putative  note DEAD/DEAH box helicase, putative; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (TAIR:AT5G65900.1); Has 26770 Blast hits to 26090 proteins in 1706 species: Archae - 311; Bacteria - 10317; Metazoa - 5264; Fungi - 3125; Plants - 1344; Viruses - 5; Other Eukaryotes - 6404 (source: NCBI BLink).  protein_id AT5G54910.1p  transcript_id AT5G54910.1  protein_id AT5G54910.1p  transcript_id AT5G54910.1  
At5g54920	chr5:022302111	0.0	W/22302111-22302297,22302540-22302661,22302747-22302862,22303034-22303133,22303489-22303523,22303721-22303784,22303867-22303894,22304019-22304239,22304375-22304638,22304853-22304951,22305062-22305112,22305218-22305305,22305398-22305576	AT5G54920.1  CDS  gene_syn MBG8.19, MBG8_19  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26990.1); Has 295 Blast hits to 264 proteins in 75 species: Archae - 0; Bacteria - 23; Metazoa - 138; Fungi - 36; Plants - 63; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT5G54920.1p  transcript_id AT5G54920.1  protein_id AT5G54920.1p  transcript_id AT5G54920.1  
At5g54920	chr5:022302111	0.0	W/22302111-22302297,22302540-22302661,22302747-22302862,22303034-22303148,22303489-22303523,22303721-22303784,22303867-22303894,22304019-22304239,22304375-22304638,22304853-22304951,22305062-22305112,22305218-22305305,22305398-22305576	AT5G54920.2  CDS  gene_syn MBG8.19, MBG8_19  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26990.1); Has 233 Blast hits to 205 proteins in 59 species: Archae - 0; Bacteria - 3; Metazoa - 116; Fungi - 29; Plants - 67; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT5G54920.2p  transcript_id AT5G54920.2  protein_id AT5G54920.2p  transcript_id AT5G54920.2  
At5g54930	chr5:022306027	0.0	C/22306027-22306839,22305897-22305935	AT5G54930.2  CDS  gene_syn MBG8.20, MBG8_20  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product AT hook motif-containing protein  note AT hook motif-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AT hook, DNA-binding, conserved site (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT hook motif-containing protein (TAIR:AT5G52890.1); Has 20 Blast hits to 20 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G54930.2p  transcript_id AT5G54930.2  protein_id AT5G54930.2p  transcript_id AT5G54930.2  
At5g54930	chr5:022306027	0.0	C/22306027-22306839,22305897-22305944	AT5G54930.1  CDS  gene_syn MBG8.20, MBG8_20  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product AT hook motif-containing protein  note AT hook motif-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AT hook, DNA-binding, conserved site (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT hook motif-containing protein (TAIR:AT5G52890.1); Has 26 Blast hits to 26 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G54930.1p  transcript_id AT5G54930.1  protein_id AT5G54930.1p  transcript_id AT5G54930.1  
At5g54940	chr5:022308420	0.0	C/22308420-22308758	AT5G54940.1  CDS  gene_syn MBG8.21, MBG8_21  go_process translation|GO:0006412||IEA  go_process translational initiation|GO:0006413||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_component cellular_component|GO:0005575||ND  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product eukaryotic translation initiation factor SUI1, putative  note eukaryotic translation initiation factor SUI1, putative; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation, translation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor SUI1 (InterPro:IPR001950), Eukaryotic translation initiation factor SUI1 (InterPro:IPR005874); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor SUI1, putative (TAIR:AT4G27130.1); Has 638 Blast hits to 635 proteins in 210 species: Archae - 21; Bacteria - 4; Metazoa - 295; Fungi - 105; Plants - 120; Viruses - 3; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT5G54940.1p  transcript_id AT5G54940.1  protein_id AT5G54940.1p  transcript_id AT5G54940.1  
At5g54940	chr5:022308420	0.0	C/22308420-22308758	AT5G54940.2  CDS  gene_syn MBG8.21, MBG8_21  go_process translation|GO:0006412||IEA  go_process translational initiation|GO:0006413||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_component cellular_component|GO:0005575||ND  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product eukaryotic translation initiation factor SUI1, putative  note eukaryotic translation initiation factor SUI1, putative; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation, translation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor SUI1 (InterPro:IPR001950), Eukaryotic translation initiation factor SUI1 (InterPro:IPR005874); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor SUI1, putative (TAIR:AT4G27130.1); Has 638 Blast hits to 635 proteins in 210 species: Archae - 21; Bacteria - 4; Metazoa - 295; Fungi - 105; Plants - 120; Viruses - 3; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT5G54940.2p  transcript_id AT5G54940.2  protein_id AT5G54940.2p  transcript_id AT5G54940.2  
At5g54950	chr5:022310075	0.0	C/22310075-22310242,22309832-22309888	AT5G54950.1  CDS  gene_syn MBG8.22, MBG8_22  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product aconitate hydratase-related / citrate hydro-lyase-related / aconitase-related  note aconitate hydratase-related / citrate hydro-lyase-related / aconitase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, stamen, leaf; EXPRESSED DURING: 4 anthesis, LP.02 two leaves visible; CONTAINS InterPro DOMAIN/s: Aconitase/Iron regulatory protein 2/2-methylisocitrate dehydratase (InterPro:IPR015934), Aconitase-like core (InterPro:IPR015937); BEST Arabidopsis thaliana protein match is: aconitate hydratase/ copper ion binding (TAIR:AT4G26970.1); Has 256 Blast hits to 256 proteins in 97 species: Archae - 0; Bacteria - 17; Metazoa - 140; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT5G54950.1p  transcript_id AT5G54950.1  protein_id AT5G54950.1p  transcript_id AT5G54950.1  
At5g54960	chr5:022310858	0.0	C/22310858-22312681	AT5G54960.1  CDS  gene_syn MBG8.23, MBG8_23, PDC2, PYRUVATE DECARBOXYLASE, pyruvate decarboxylase-2  gene PDC2  function pyruvate decarboxylase-2  go_function magnesium ion binding|GO:0000287||IEA  go_function catalytic activity|GO:0003824||IEA  go_function carboxy-lyase activity|GO:0016831||IEA  go_function thiamin pyrophosphate binding|GO:0030976||IEA  go_component cellular_component|GO:0005575||ND  go_process response to hypoxia|GO:0001666|12368499|IEP  go_function pyruvate decarboxylase activity|GO:0004737||ISS  product PDC2 (pyruvate decarboxylase-2); carboxy-lyase/ catalytic/ magnesium ion binding / pyruvate decarboxylase/ thiamin pyrophosphate binding  note pyruvate decarboxylase-2 (PDC2); FUNCTIONS IN: pyruvate decarboxylase activity, magnesium ion binding, carboxy-lyase activity, thiamin pyrophosphate binding, catalytic activity; INVOLVED IN: response to hypoxia; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiamine pyrophosphate enzyme, central region (InterPro:IPR012000), Pyruvate decarboxylase/indolepyruvate decarboxylase (InterPro:IPR012110), Thiamine pyrophosphate enzyme, N-terminal TPP binding region (InterPro:IPR012001), Thiamine pyrophosphate enzyme, C-terminal TPP-binding (InterPro:IPR011766); BEST Arabidopsis thaliana protein match is: pyruvate decarboxylase, putative (TAIR:AT4G33070.1); Has 13642 Blast hits to 13633 proteins in 1439 species: Archae - 235; Bacteria - 7311; Metazoa - 135; Fungi - 522; Plants - 430; Viruses - 2; Other Eukaryotes - 5007 (source: NCBI BLink).  protein_id AT5G54960.1p  transcript_id AT5G54960.1  protein_id AT5G54960.1p  transcript_id AT5G54960.1  
At5g54970	chr5:022313271	0.0	W/22313271-22313648	AT5G54970.1  CDS  gene_syn MBG8.24, MBG8_24  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26960.1); Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G54970.1p  transcript_id AT5G54970.1  protein_id AT5G54970.1p  transcript_id AT5G54970.1  
At5g54980	chr5:022315799	0.0	W/22315799-22316016,22316096-22316207,22316306-22316560	AT5G54980.1  CDS  gene_syn MBG8.25, MBG8_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane family protein  note integral membrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT1G17200.1); Has 181 Blast hits to 181 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 181; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G54980.1p  transcript_id AT5G54980.1  protein_id AT5G54980.1p  transcript_id AT5G54980.1  
At5g54990	chr5:022317505	0.0	W/22317505-22318185	AT5G54990.1  CDS  gene_syn MBG8.26, MBG8_26  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G18110.1); Has 6483 Blast hits to 6467 proteins in 214 species: Archae - 0; Bacteria - 6; Metazoa - 2166; Fungi - 512; Plants - 2553; Viruses - 39; Other Eukaryotes - 1207 (source: NCBI BLink).  protein_id AT5G54990.1p  transcript_id AT5G54990.1  protein_id AT5G54990.1p  transcript_id AT5G54990.1  
At5g55000	chr5:022318644	0.0	W/22318644-22318689,22319041-22319150,22319597-22319731,22319873-22320019,22320397-22320480,22320586-22320632,22320726-22320799,22320912-22320970,22321149-22321208,22321325-22321405,22321546-22321599	AT5G55000.2  CDS  gene_syn FIP2, MBG8.27, MBG8_27  gene FIP2  function FH protein interacting protein FIP2  go_component voltage-gated potassium channel complex|GO:0008076||IEA  go_component membrane|GO:0016020||IEA  go_process potassium ion transport|GO:0006813||IEA  go_function voltage-gated potassium channel activity|GO:0005249||IEA  go_function protein binding|GO:0005515||IEA  go_component voltage-gated potassium channel complex|GO:0008076||ISS  go_component membrane|GO:0016020||ISS  go_process potassium ion transport|GO:0006813||ISS  go_function voltage-gated potassium channel activity|GO:0005249||ISS  product FIP2; protein binding / voltage-gated potassium channel  note FIP2; FUNCTIONS IN: protein binding, voltage-gated potassium channel activity; INVOLVED IN: potassium ion transport; LOCATED IN: voltage-gated potassium channel complex, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ fold (InterPro:IPR011333), Pentapeptide repeat (InterPro:IPR001646), Potassium channel, voltage dependent, Kv, tetramerisation (InterPro:IPR003131), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: thylakoid lumenal 15 kDa protein, chloroplast (TAIR:AT2G44920.2); Has 23935 Blast hits to 7378 proteins in 794 species: Archae - 297; Bacteria - 15780; Metazoa - 1496; Fungi - 10; Plants - 232; Viruses - 72; Other Eukaryotes - 6048 (source: NCBI BLink).  protein_id AT5G55000.2p  transcript_id AT5G55000.2  protein_id AT5G55000.2p  transcript_id AT5G55000.2  
At5g55000	chr5:022318644	0.0	W/22318644-22318689,22319041-22319150,22319597-22319731,22319873-22320019,22320397-22320480,22320586-22320632,22320726-22320799,22320912-22320970,22321149-22321208,22321325-22321435	AT5G55000.1  CDS  gene_syn FIP2, MBG8.27, MBG8_27  gene FIP2  function FH protein interacting protein FIP2  go_component voltage-gated potassium channel complex|GO:0008076||IEA  go_component membrane|GO:0016020||IEA  go_process potassium ion transport|GO:0006813||IEA  go_function voltage-gated potassium channel activity|GO:0005249||IEA  go_function protein binding|GO:0005515||IEA  go_component voltage-gated potassium channel complex|GO:0008076||ISS  go_component membrane|GO:0016020||ISS  go_process potassium ion transport|GO:0006813||ISS  go_function voltage-gated potassium channel activity|GO:0005249||ISS  product FIP2; protein binding / voltage-gated potassium channel  note FIP2; FUNCTIONS IN: protein binding, voltage-gated potassium channel activity; INVOLVED IN: potassium ion transport; LOCATED IN: voltage-gated potassium channel complex, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ fold (InterPro:IPR011333), Pentapeptide repeat (InterPro:IPR001646), Potassium channel, voltage dependent, Kv, tetramerisation (InterPro:IPR003131), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: thylakoid lumenal 15 kDa protein, chloroplast (TAIR:AT2G44920.2); Has 21054 Blast hits to 7234 proteins in 783 species: Archae - 287; Bacteria - 14055; Metazoa - 1418; Fungi - 10; Plants - 173; Viruses - 80; Other Eukaryotes - 5031 (source: NCBI BLink).  protein_id AT5G55000.1p  transcript_id AT5G55000.1  protein_id AT5G55000.1p  transcript_id AT5G55000.1  
At5g55010	chr5:022321900	0.0	W/22321900-22322229	AT5G55010.1  CDS  gene_syn K13P22.1, K13P22_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, carpel, stamen, leaf; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G55010.1p  transcript_id AT5G55010.1  protein_id AT5G55010.1p  transcript_id AT5G55010.1  
At5g55020	chr5:022325922	0.0	C/22325922-22326248,22324599-22325843	AT5G55020.1  CDS  gene_syn ATMYB120, K13P22.2, K13P22_2, MYB DOMAIN PROTEIN 120, MYB120  gene MYB120  function Encodes a putative transcription factor, member of the R2R3 factor gene family (MYB120).  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product MYB120 (MYB DOMAIN PROTEIN 120); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 120 (MYB120); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB97 (myb domain protein 97); DNA binding / transcription factor (TAIR:AT4G26930.1); Has 20040 Blast hits to 14477 proteins in 565 species: Archae - 2; Bacteria - 154; Metazoa - 6006; Fungi - 2153; Plants - 4421; Viruses - 152; Other Eukaryotes - 7152 (source: NCBI BLink).  protein_id AT5G55020.1p  transcript_id AT5G55020.1  protein_id AT5G55020.1p  transcript_id AT5G55020.1  
At5g55040	chr5:022331212	0.0	C/22331212-22331703,22330763-22330787,22330582-22330663,22330440-22330485,22330243-22330341,22329965-22330033,22329534-22329864,22329277-22329422,22327727-22329187	AT5G55040.1  CDS  gene_syn K13P22.4, K13P22_4  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain, conserved site (InterPro:IPR018359), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT1G20670.1); Has 65927 Blast hits to 35925 proteins in 1053 species: Archae - 114; Bacteria - 2250; Metazoa - 31242; Fungi - 8349; Plants - 2791; Viruses - 530; Other Eukaryotes - 20651 (source: NCBI BLink).  protein_id AT5G55040.1p  transcript_id AT5G55040.1  protein_id AT5G55040.1p  transcript_id AT5G55040.1  
At5g55040	chr5:022331212	0.0	C/22331212-22331703,22330763-22330787,22330582-22330663,22330440-22330485,22330243-22330341,22329965-22330033,22329534-22329864,22329277-22329422,22327727-22329187	AT5G55040.2  CDS  gene_syn K13P22.4, K13P22_4  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain, conserved site (InterPro:IPR018359), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT1G20670.1); Has 65927 Blast hits to 35925 proteins in 1053 species: Archae - 114; Bacteria - 2250; Metazoa - 31242; Fungi - 8349; Plants - 2791; Viruses - 530; Other Eukaryotes - 20651 (source: NCBI BLink).  protein_id AT5G55040.2p  transcript_id AT5G55040.2  protein_id AT5G55040.2p  transcript_id AT5G55040.2  
At5g55050	chr5:022337745	0.0	W/22337745-22338018,22338305-22338450,22338786-22339016,22339096-22339351,22339518-22339741	AT5G55050.1  CDS  gene_syn K13P22.5, K13P22_5  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function lipase activity|GO:0016298||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT5G37690.1); Has 1910 Blast hits to 1894 proteins in 202 species: Archae - 0; Bacteria - 306; Metazoa - 1; Fungi - 48; Plants - 1538; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT5G55050.1p  transcript_id AT5G55050.1  protein_id AT5G55050.1p  transcript_id AT5G55050.1  
At5g55045	chr5:022338672	0.0	C/22338672-22338744	AT5G55045.1  tRNA  gene_syn 67859.TRNA-PHE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Phe (anticodon: GAA)  transcript_id AT5G55045.1  
At5g55055	chr5:022340501	0.0	C/22340501-22340573	AT5G55055.1  tRNA  gene_syn 67859.TRNA-PHE-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Phe (anticodon: GAA)  transcript_id AT5G55055.1  
At5g55056	chr5:022340983	0.0	W/22340983-22341111	AT5G55056.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G55056.1p  transcript_id AT5G55056.1  protein_id AT5G55056.1p  transcript_id AT5G55056.1  
At5g55060	chr5:022342079	0.0	W/22342079-22342181,22342491-22342531,22342944-22343144,22343276-22343373,22343596-22343789,22343887-22344068,22344257-22344592,22344680-22344744,22344985-22345033,22345142-22345277,22345382-22345466,22345559-22345628,22345801-22345941,22346113-22346400	AT5G55060.1  CDS  gene_syn MCO15.1, MCO15_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58510.1); Has 161 Blast hits to 157 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 99; Fungi - 3; Plants - 36; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT5G55060.1p  transcript_id AT5G55060.1  protein_id AT5G55060.1p  transcript_id AT5G55060.1  
At5g55070	chr5:022347637	0.0	W/22347637-22347693,22347782-22347853,22348002-22348056,22348141-22348159,22348243-22348310,22348497-22348571,22348665-22348720,22348825-22348869,22348950-22349213,22349329-22349423,22349543-22349633,22349722-22349832,22349930-22350124,22350218-22350409	AT5G55070.1  CDS  gene_syn MCO15.2, MCO15_2  go_component mitochondrion|GO:0005739|15276431|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_function dihydrolipoyllysine-residue succinyltransferase activity|GO:0004149||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|14764908|IDA  go_process response to oxidative stress|GO:0006979|12492832|IDA  go_process metabolic process|GO:0008152||ISS  go_function acyltransferase activity|GO:0008415||ISS  product 2-oxoacid dehydrogenase family protein  note 2-oxoacid dehydrogenase family protein; FUNCTIONS IN: dihydrolipoyllysine-residue succinyltransferase activity, acyltransferase activity; INVOLVED IN: response to oxidative stress, metabolic process; LOCATED IN: cytosolic ribosome, mitochondrion; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), Dihydrolipoamide succinyltransferase (InterPro:IPR006255), 2-oxoacid dehydrogenase acyltransferase, catalytic domain (InterPro:IPR001078), Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: 2-oxoacid dehydrogenase family protein (TAIR:AT4G26910.2); Has 20861 Blast hits to 17461 proteins in 1458 species: Archae - 93; Bacteria - 9038; Metazoa - 1182; Fungi - 580; Plants - 756; Viruses - 230; Other Eukaryotes - 8982 (source: NCBI BLink).  protein_id AT5G55070.1p  transcript_id AT5G55070.1  protein_id AT5G55070.1p  transcript_id AT5G55070.1  
At5g55080	chr5:022353056	0.0	C/22353056-22353058,22352846-22352972,22352627-22352744,22352115-22352204,22351749-22352005,22351576-22351649	AT5G55080.1  CDS  gene_syn AtRAN4, MCO15.3, MCO15_3, Ras-related nuclear protein 4  gene AtRAN4  function A member of RAN GTPase gene family.  go_process intracellular protein transport|GO:0006886||IEA  go_process nucleocytoplasmic transport|GO:0006913||IEA  go_process signal transduction|GO:0007165||IEA  go_function GTPase activity|GO:0003924||IEA  go_function protein binding|GO:0005515||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product AtRAN4 (Ras-related nuclear protein 4); GTP binding / GTPase/ protein binding  note Ras-related nuclear protein 4 (AtRAN4); FUNCTIONS IN: protein binding, GTP binding, GTPase activity; INVOLVED IN: intracellular protein transport, signal transduction, nucleocytoplasmic transport; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.10 ten leaves visible, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), GTP-binding nuclear protein, Ran, conserved site (InterPro:IPR018210), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753); BEST Arabidopsis thaliana protein match is: RAN3 (RAN GTPASE 3); GTP binding / GTPase/ protein binding (TAIR:AT5G55190.1); Has 19698 Blast hits to 19679 proteins in 582 species: Archae - 13; Bacteria - 102; Metazoa - 10691; Fungi - 2298; Plants - 1939; Viruses - 19; Other Eukaryotes - 4636 (source: NCBI BLink).  protein_id AT5G55080.1p  transcript_id AT5G55080.1  protein_id AT5G55080.1p  transcript_id AT5G55080.1  
At5g55090	chr5:022356852	0.0	C/22356852-22358198	AT5G55090.1  CDS  gene_syn MAPKKK15, MCO15.4, MCO15_4  gene MAPKKK15  function member of MEKK subfamily  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product MAPKKK15; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note MAPKKK15; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: MAPKKK16; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT4G26890.1); Has 90381 Blast hits to 89153 proteins in 3374 species: Archae - 75; Bacteria - 7788; Metazoa - 39884; Fungi - 8109; Plants - 17263; Viruses - 621; Other Eukaryotes - 16641 (source: NCBI BLink).  protein_id AT5G55090.1p  transcript_id AT5G55090.1  protein_id AT5G55090.1p  transcript_id AT5G55090.1  
At5g55100	chr5:022364394	0.0	C/22364394-22364664,22364075-22364235,22362892-22363626,22361401-22362768	AT5G55100.2  CDS  gene_syn MCO15.5, MCO15_5  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process RNA processing|GO:0006396||ISS  go_function RNA binding|GO:0003723||ISS  product SWAP (Suppressor-of-White-APricot)/surp domain-containing protein  note SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061); Has 33451 Blast hits to 17797 proteins in 736 species: Archae - 34; Bacteria - 1458; Metazoa - 17550; Fungi - 2853; Plants - 1841; Viruses - 122; Other Eukaryotes - 9593 (source: NCBI BLink).  protein_id AT5G55100.2p  transcript_id AT5G55100.2  protein_id AT5G55100.2p  transcript_id AT5G55100.2  
At5g55100	chr5:022364394	0.0	C/22364394-22364664,22364075-22364235,22362892-22363626,22361420-22362768,22361281-22361296	AT5G55100.1  CDS  gene_syn MCO15.5, MCO15_5  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process RNA processing|GO:0006396||ISS  go_function RNA binding|GO:0003723||ISS  product SWAP (Suppressor-of-White-APricot)/surp domain-containing protein  note SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061); Has 33503 Blast hits to 17830 proteins in 738 species: Archae - 34; Bacteria - 1460; Metazoa - 17591; Fungi - 2856; Plants - 1832; Viruses - 122; Other Eukaryotes - 9608 (source: NCBI BLink).  protein_id AT5G55100.1p  transcript_id AT5G55100.1  protein_id AT5G55100.1p  transcript_id AT5G55100.1  
At5g55110	chr5:022367870	0.0	W/22367870-22368361	AT5G55110.1  CDS  gene_syn MCO15.6, MCO15_6  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product stigma-specific Stig1 family protein  note stigma-specific Stig1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Stigma-specific protein Stig1 (InterPro:IPR006969); BEST Arabidopsis thaliana protein match is: stigma-specific Stig1 family protein (TAIR:AT4G26880.1); Has 180 Blast hits to 95 proteins in 24 species: Archae - 0; Bacteria - 84; Metazoa - 0; Fungi - 15; Plants - 73; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G55110.1p  transcript_id AT5G55110.1  protein_id AT5G55110.1p  transcript_id AT5G55110.1  
At5g55120	chr5:022369515	0.0	W/22369515-22369626,22369704-22369804,22369898-22369957,22370365-22370616,22370696-22370881,22371041-22371289,22371374-22371709	AT5G55120.1  CDS  gene_syn MCO15.7, MCO15_7, VITAMIN C DEFECTIVE 5, VTC5  gene VTC5  function Encodes a GDP-L-galactose phosphorylase, with similar biochemical properties as VTC2.  go_component cellular_component|GO:0005575||ND  go_process response to jasmonic acid stimulus|GO:0009753|16262714|IEP  go_process response to ozone|GO:0010193|16262714|IEP  go_process L-ascorbic acid biosynthetic process|GO:0019853||IMP  go_function galactose-1-phosphate guanylyltransferase (GDP) activity|GO:0010475||IDA  go_function quercetin 4 -O-glucosyltransferase activity|GO:0080046|18463094|IDA  go_function GDP-D-glucose phosphorylase activity|GO:0080048|18463094|IDA  product VTC5 (VITAMIN C DEFECTIVE 5); GDP-D-glucose phosphorylase/ galactose-1-phosphate guanylyltransferase (GDP)/ quercetin 4 -O-glucosyltransferase  note VITAMIN C DEFECTIVE 5 (VTC5); FUNCTIONS IN: GDP-D-glucose phosphorylase activity, galactose-1-phosphate guanylyltransferase (GDP) activity, quercetin 4 -O-glucosyltransferase activity; INVOLVED IN: response to jasmonic acid stimulus, L-ascorbic acid biosynthetic process, response to ozone; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: VTC2 (vitamin c defective 2); GDP-D-glucose phosphorylase/ GDP-galactose:glucose-1-phosphate guanyltransferase/ GDP-galactose:mannose-1-phosphate guanyltransferase/ GDP-galactose:myoinositol-1-phosphate guanyltransferase/ galactose-1-phosphate guanylyltransferase (GDP)/ glucose-1-phosphate guanylyltransferase (GDP)/ mannose-1-phosphate guanylyltransferase (GDP)/ quercetin 4 -O-glucosyltransferase (TAIR:AT4G26850.1); Has 167 Blast hits to 167 proteins in 61 species: Archae - 0; Bacteria - 2; Metazoa - 101; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT5G55120.1p  transcript_id AT5G55120.1  protein_id AT5G55120.1p  transcript_id AT5G55120.1  
At5g55125	chr5:022372737	0.0	W/22372737-22372967	AT5G55125.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 10 Blast hits to 10 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G55125.1p  transcript_id AT5G55125.1  protein_id AT5G55125.1p  transcript_id AT5G55125.1  
At5g55125	chr5:022372737	0.0	W/22372737-22372967	AT5G55125.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 10 Blast hits to 10 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G55125.2p  transcript_id AT5G55125.2  protein_id AT5G55125.2p  transcript_id AT5G55125.2  
At5g55130	chr5:022375776	0.0	C/22375776-22376028,22375416-22375427,22375220-22375275,22375030-22375094,22374846-22374920,22374656-22374734,22374483-22374521,22374276-22374384,22374060-22374178,22373856-22373972,22373374-22373763	AT5G55130.2  CDS  gene_syn CNX5, CO-FACTOR FOR NITRATE, REDUCTASE AND XANTHINE DEHYDROGENASE 5, MCO15.8, MCO15_8, SIR1, SIRTINOL RESISTANT 1  gene CNX5  function putative molybdopterin synthase sulphurylase (cnx5)  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function Mo-molybdopterin cofactor sulfurase activity|GO:0008265|14581628|ISS  go_function Mo-molybdopterin cofactor sulfurase activity|GO:0008265||ISS  product CNX5 (CO-FACTOR FOR NITRATE, REDUCTASE AND XANTHINE DEHYDROGENASE 5); Mo-molybdopterin cofactor sulfurase  note CO-FACTOR FOR NITRATE, REDUCTASE AND XANTHINE DEHYDROGENASE 5 (CNX5); FUNCTIONS IN: Mo-molybdopterin cofactor sulfurase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594), Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding (InterPro:IPR016040), MoeZ/MoeB (InterPro:IPR007901); BEST Arabidopsis thaliana protein match is: SAE2 (SUMO-ACTIVATING ENZYME 2); SUMO activating enzyme (TAIR:AT2G21470.2); Has 8888 Blast hits to 8887 proteins in 1311 species: Archae - 147; Bacteria - 4789; Metazoa - 574; Fungi - 363; Plants - 177; Viruses - 0; Other Eukaryotes - 2838 (source: NCBI BLink).  protein_id AT5G55130.2p  transcript_id AT5G55130.2  protein_id AT5G55130.2p  transcript_id AT5G55130.2  
At5g55130	chr5:022375776	0.0	C/22375776-22376028,22375416-22375508,22375220-22375275,22375030-22375094,22374846-22374920,22374656-22374734,22374483-22374521,22374276-22374384,22374060-22374178,22373856-22373972,22373374-22373763	AT5G55130.1  CDS  gene_syn CNX5, CO-FACTOR FOR NITRATE, REDUCTASE AND XANTHINE DEHYDROGENASE 5, MCO15.8, MCO15_8, SIR1, SIRTINOL RESISTANT 1  gene CNX5  function putative molybdopterin synthase sulphurylase (cnx5)  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function Mo-molybdopterin cofactor sulfurase activity|GO:0008265|14581628|ISS  go_function Mo-molybdopterin cofactor sulfurase activity|GO:0008265||ISS  product CNX5 (CO-FACTOR FOR NITRATE, REDUCTASE AND XANTHINE DEHYDROGENASE 5); Mo-molybdopterin cofactor sulfurase  note CO-FACTOR FOR NITRATE, REDUCTASE AND XANTHINE DEHYDROGENASE 5 (CNX5); FUNCTIONS IN: Mo-molybdopterin cofactor sulfurase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594), Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding (InterPro:IPR016040), MoeZ/MoeB (InterPro:IPR007901); BEST Arabidopsis thaliana protein match is: SAE2 (SUMO-ACTIVATING ENZYME 2); SUMO activating enzyme (TAIR:AT2G21470.2); Has 10634 Blast hits to 10534 proteins in 1359 species: Archae - 151; Bacteria - 5564; Metazoa - 882; Fungi - 571; Plants - 250; Viruses - 0; Other Eukaryotes - 3216 (source: NCBI BLink).  protein_id AT5G55130.1p  transcript_id AT5G55130.1  protein_id AT5G55130.1p  transcript_id AT5G55130.1  
At5g55131	chr5:022376583	0.0	W/22376583-22376661,22376805-22376989	AT5G55131.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55132.1); Has 16 Blast hits to 16 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G55131.1p  transcript_id AT5G55131.1  protein_id AT5G55131.1p  transcript_id AT5G55131.1  
At5g55132	chr5:022379086	0.0	W/22379086-22379152,22379294-22379469	AT5G55132.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55131.1); Has 9 Blast hits to 9 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G55132.1p  transcript_id AT5G55132.1  protein_id AT5G55132.1p  transcript_id AT5G55132.1  
At5g55135	chr5:022379959	0.0	W/22379959-22380039,22380129-22380386	AT5G55135.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G55135.1p  transcript_id AT5G55135.1  protein_id AT5G55135.1p  transcript_id AT5G55135.1  
At5g55140	chr5:022381370	0.0	W/22381370-22381561,22381650-22381787	AT5G55140.1  CDS  gene_syn MCO15.9, MCO15_9  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_component large ribosomal subunit|GO:0015934||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L30 family protein  note ribosomal protein L30 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30p/L7e, N-terminal (InterPro:IPR000517), Ribosomal protein L30, bacterial-type (InterPro:IPR005996), Ribosomal protein L30, ferredoxin-like fold domain (InterPro:IPR016082); Has 388 Blast hits to 388 proteins in 155 species: Archae - 0; Bacteria - 328; Metazoa - 2; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT5G55140.1p  transcript_id AT5G55140.1  protein_id AT5G55140.1p  transcript_id AT5G55140.1  
At5g55150	chr5:022383090	0.0	C/22383090-22383392,22382275-22383054	AT5G55150.1  CDS  gene_syn MCO15.10, MCO15_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G26160.1); Has 177 Blast hits to 175 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G55150.1p  transcript_id AT5G55150.1  protein_id AT5G55150.1p  transcript_id AT5G55150.1  
At5g55160	chr5:022384701	0.0	C/22384701-22384772,22383929-22384078,22383747-22383836	AT5G55160.1  CDS  gene_syn ATSUMO2, MCO15.11, MCO15_11, SMALL UBIQUITIN-LIKE MODIFIER 2, SUM2, SUMO 2, SUMO2  gene SUMO2  function Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. SUMO2 can form SUMO chains through lysine residue 10 during in vitro assays.  go_component nucleus|GO:0005634|12482876|IDA  go_component nucleus|GO:0005634|17644626|IDA  go_component cytoplasm|GO:0005737|12482876|IDA  go_component cytoplasm|GO:0005737|17644626|IDA  go_process response to heat|GO:0009408|17644626|IEP  go_process protein sumoylation|GO:0016925|12482876|IEP  go_function protein binding|GO:0005515|12482876|ISS  go_function protein tag|GO:0031386|16740136|IDA  product SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2); protein binding / protein tag  note SMALL UBIQUITIN-LIKE MODIFIER 2 (SUMO2); FUNCTIONS IN: protein binding, protein tag; INVOLVED IN: protein sumoylation, response to heat; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1); protein binding / protein tag (TAIR:AT4G26840.1); Has 847 Blast hits to 846 proteins in 172 species: Archae - 0; Bacteria - 0; Metazoa - 519; Fungi - 103; Plants - 130; Viruses - 1; Other Eukaryotes - 94 (source: NCBI BLink).  protein_id AT5G55160.1p  transcript_id AT5G55160.1  protein_id AT5G55160.1p  transcript_id AT5G55160.1  
At5g55160	chr5:022384701	0.0	C/22384701-22384772,22384152-22384190,22383929-22384078,22383747-22383836	AT5G55160.2  CDS  gene_syn ATSUMO2, MCO15.11, MCO15_11, SMALL UBIQUITIN-LIKE MODIFIER 2, SUM2, SUMO 2, SUMO2  gene SUMO2  function Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. SUMO2 can form SUMO chains through lysine residue 10 during in vitro assays.  go_component nucleus|GO:0005634|12482876|IDA  go_component nucleus|GO:0005634|17644626|IDA  go_component cytoplasm|GO:0005737|12482876|IDA  go_component cytoplasm|GO:0005737|17644626|IDA  go_process response to heat|GO:0009408|17644626|IEP  go_process protein sumoylation|GO:0016925|12482876|IEP  go_function protein binding|GO:0005515|12482876|ISS  go_function protein tag|GO:0031386|16740136|IDA  product SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2); protein binding / protein tag  note SMALL UBIQUITIN-LIKE MODIFIER 2 (SUMO2); FUNCTIONS IN: protein binding, protein tag; INVOLVED IN: protein sumoylation, response to heat; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1); protein binding / protein tag (TAIR:AT4G26840.1).  protein_id AT5G55160.2p  transcript_id AT5G55160.2  protein_id AT5G55160.2p  transcript_id AT5G55160.2  
At5g55170	chr5:022385997	0.0	C/22385997-22386071,22385670-22385819,22385468-22385578	AT5G55170.1  CDS  gene_syn ATSUMO3, MCO15.12, MCO15_12, SMALL UBIQUITIN-LIKE MODIFIER 3, SUM3, SUMO 3, SUMO3  gene SUMO3  function Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets.  go_component cellular_component|GO:0005575||ND  go_process protein sumoylation|GO:0016925|12482876|IEP  go_function protein binding|GO:0005515|12482876|ISS  go_function protein tag|GO:0031386|16740136|IDA  product SUMO3 (SMALL UBIQUITIN-LIKE MODIFIER 3); protein binding / protein tag  note SMALL UBIQUITIN-LIKE MODIFIER 3 (SUMO3); FUNCTIONS IN: protein binding, protein tag; INVOLVED IN: protein sumoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2); protein binding / protein tag (TAIR:AT5G55160.1); Has 783 Blast hits to 782 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 504; Fungi - 89; Plants - 107; Viruses - 1; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT5G55170.1p  transcript_id AT5G55170.1  protein_id AT5G55170.1p  transcript_id AT5G55170.1  
At5g55180	chr5:022388834	0.0	W/22388834-22388900,22388985-22390265,22390516-22390550	AT5G55180.1  CDS  gene_syn MCO15.13, MCO15_13  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT4G26830.1); Has 1770 Blast hits to 1712 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 1757; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G55180.1p  transcript_id AT5G55180.1  protein_id AT5G55180.1p  transcript_id AT5G55180.1  
At5g55180	chr5:022388834	0.0	W/22388834-22388900,22388985-22390269,22390516-22390561	AT5G55180.2  CDS  gene_syn MCO15.13, MCO15_13  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT4G26830.1).  protein_id AT5G55180.2p  transcript_id AT5G55180.2  protein_id AT5G55180.2p  transcript_id AT5G55180.2  
At5g55190	chr5:022392285	0.0	W/22392285-22392287,22392424-22392493,22392784-22392840,22392942-22393059,22393277-22393366,22393453-22393632,22393722-22393799,22393888-22393957	AT5G55190.1  CDS  gene_syn ATRAN3, MCO15.14, MCO15_14, RAN GTPASE 3, RAN3  gene RAN3  function A member of RAN GTPase gene family. Encodes a small soluble GTP-binding protein. Likely to be involved in nuclear translocation of proteins. May also be involved in cell cycle progression.  go_process protein import into nucleus|GO:0006606|9025305|TAS  go_function GTPase activity|GO:0003924|9025305|ISS  go_function protein binding|GO:0005515|9025305|IPI  go_function GTP binding|GO:0005525|9025305|ISS  go_function GTP binding|GO:0005525||ISS  product RAN3 (RAN GTPASE 3); GTP binding / GTPase/ protein binding  note RAN GTPASE 3 (RAN3); FUNCTIONS IN: protein binding, GTP binding, GTPase activity; INVOLVED IN: protein import into nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), GTP-binding nuclear protein, Ran, conserved site (InterPro:IPR018210), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753); BEST Arabidopsis thaliana protein match is: RAN2; GTP binding / GTPase/ protein binding (TAIR:AT5G20020.1); Has 18887 Blast hits to 18869 proteins in 569 species: Archae - 11; Bacteria - 89; Metazoa - 10277; Fungi - 2248; Plants - 1712; Viruses - 19; Other Eukaryotes - 4531 (source: NCBI BLink).  protein_id AT5G55190.1p  transcript_id AT5G55190.1  protein_id AT5G55190.1p  transcript_id AT5G55190.1  
At5g55200	chr5:022394705	0.0	W/22394705-22394848,22395160-22395331,22395420-22395616,22395717-22395884,22395973-22396101,22396237-22396335	AT5G55200.1  CDS  gene_syn MCO15.15, MCO15_15  go_component mitochondrion|GO:0005739|17137349|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_process protein folding|GO:0006457||IEA  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process protein folding|GO:0006457||ISS  product co-chaperone grpE protein, putative  note co-chaperone grpE protein, putative; FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GrpE nucleotide exchange factor (InterPro:IPR000740), GrpE nucleotide exchange factor, head (InterPro:IPR009012), GrpE nucleotide exchange factor, coiled-coil (InterPro:IPR013805); BEST Arabidopsis thaliana protein match is: AR192; adenyl-nucleotide exchange factor/ chaperone binding / protein binding / protein homodimerization (TAIR:AT4G26780.1); Has 5631 Blast hits to 5631 proteins in 1507 species: Archae - 61; Bacteria - 2769; Metazoa - 166; Fungi - 92; Plants - 87; Viruses - 0; Other Eukaryotes - 2456 (source: NCBI BLink).  protein_id AT5G55200.1p  transcript_id AT5G55200.1  protein_id AT5G55200.1p  transcript_id AT5G55200.1  
At5g55210	chr5:022397069	0.0	C/22397069-22397374,22396853-22396990,22396707-22396769	AT5G55210.1  CDS  gene_syn MCO15.16, MCO15_16  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22320.1); Has 24 Blast hits to 24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G55210.1p  transcript_id AT5G55210.1  protein_id AT5G55210.1p  transcript_id AT5G55210.1  
At5g55220	chr5:022397677	0.0	W/22397677-22397997,22398107-22398190,22398285-22398413,22398574-22398662,22398771-22398954,22399215-22399305,22399411-22399565,22399656-22399748,22399841-22399933,22400009-22400089,22400173-22400322,22400410-22400505,22400601-22400678	AT5G55220.1  CDS  gene_syn MCO15.17, MCO15_17  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process protein folding|GO:0006457||IEA  go_process protein transport|GO:0015031||IEA  go_process protein folding|GO:0006457||ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product trigger factor type chaperone family protein  note trigger factor type chaperone family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, C-terminal, bacterial (InterPro:IPR008880), Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881), Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); Has 4453 Blast hits to 4437 proteins in 1318 species: Archae - 0; Bacteria - 2754; Metazoa - 39; Fungi - 3; Plants - 24; Viruses - 2; Other Eukaryotes - 1631 (source: NCBI BLink).  protein_id AT5G55220.1p  transcript_id AT5G55220.1  protein_id AT5G55220.1p  transcript_id AT5G55220.1  
At5g55230	chr5:022402716	0.0	W/22402716-22402787,22402868-22403071,22403165-22403410,22403486-22403701,22403793-22403948,22404036-22404347,22404449-22404536,22404631-22404779,22404862-22405182	AT5G55230.1  CDS  gene_syn ATMAP65-1, MAP65-1, MCO15.18, MCO15_18, MICROTUBULE-ASSOCIATED PROTEINS 65-1  gene ATMAP65-1  function Binds and bundles microtubules. Plays a role in stabilizing anti-parallel microtubules in the central spindle at anaphase to early cytokinesis but is not essential at the midline of the phragmoplast at later stages. The timing with which the MAP65-1 was targeted to the spindle appears to be regulated by a phosphorylation sensitive switch. Enhances microtubule polymerization, promotes nucleation and stabilizes microtubules against cold treatment and dilution.  go_component nucleus|GO:0005634|15469496|IDA  go_component cytoplasm|GO:0005737|15469496|IDA  go_component spindle|GO:0005819|15469496|IDA  go_component phragmoplast|GO:0009524|15469496|IDA  go_component phragmoplast|GO:0009524|19060108|IDA  go_component preprophase band|GO:0009574|19060108|IDA  go_component cortical microtubule, transverse to long axis|GO:0010005|15908607|IDA  go_component cortical microtubule|GO:0055028|19060108|IDA  go_process cytokinesis|GO:0000910|16098102|IMP  go_process microtubule bundle formation|GO:0001578|15908607|IDA  go_process microtubule nucleation|GO:0007020|15908607|IDA  go_process positive regulation of microtubule polymerization|GO:0031116|15908607|IDA  go_process microtubule polymerization|GO:0046785|19060108|IDA  go_process anaphase|GO:0051322|16098102|IMP  go_process anaphase|GO:0051322|19060108|IDA  go_function microtubule binding|GO:0008017|15557096|IDA  go_function microtubule binding|GO:0008017|15908607|IDA  go_function microtubule binding|GO:0008017|19060108|IDA  product ATMAP65-1 (MICROTUBULE-ASSOCIATED PROTEINS 65-1); microtubule binding  note MICROTUBULE-ASSOCIATED PROTEINS 65-1 (ATMAP65-1); FUNCTIONS IN: microtubule binding; INVOLVED IN: in 6 processes; LOCATED IN: in 7 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MAP65/ASE1 (InterPro:IPR007145); BEST Arabidopsis thaliana protein match is: MAP65-2 (TAIR:AT4G26760.1); Has 4971 Blast hits to 3999 proteins in 425 species: Archae - 70; Bacteria - 385; Metazoa - 2869; Fungi - 334; Plants - 263; Viruses - 8; Other Eukaryotes - 1042 (source: NCBI BLink).  protein_id AT5G55230.1p  transcript_id AT5G55230.1  protein_id AT5G55230.1p  transcript_id AT5G55230.1  
At5g55240	chr5:022405963	0.0	W/22405963-22406077,22406166-22406315,22406418-22406503,22406588-22406682,22406779-22406904,22406999-22407158	AT5G55240.1  CDS  gene_syn MCO15.19, MCO15_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product caleosin-related family protein / embryo-specific protein, putative  note caleosin-related family protein / embryo-specific protein, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: ATS1 (ARABIDOPSIS THALIANA SEED GENE 1); calcium ion binding (TAIR:AT4G26740.1); Has 228 Blast hits to 223 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 46; Plants - 179; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G55240.1p  transcript_id AT5G55240.1  protein_id AT5G55240.1p  transcript_id AT5G55240.1  
At5g55250	chr5:022409875	0.0	C/22409875-22410291,22409326-22409601,22407589-22407942	AT5G55250.2  CDS  gene_syn IAA CARBOXYLMETHYLTRANSFERASE 1, IAMT1, MCO15.20, MCO15_20  gene IAMT1  function Encodes an enzyme which specifically converts IAA to its methyl ester form MelIAA. This gene belongs to the family of carboxyl methyltransferases whose members catalyze the transfer of the methyl group from S-adenosyl-L-methionine to carboxylic acid-containing substrates to form small molecule methyl esters. Expression of TCP genes is downregulated in mutant iamt1-D.  go_component cellular_component|GO:0005575||ND  go_process polarity specification of adaxial/abaxial axis|GO:0009944|16169896|IMP  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757|11287667|IMP  go_function indole acetic acid carboxyl methyltransferase activity|GO:0051749|12897246|IDA  product IAMT1 (IAA CARBOXYLMETHYLTRANSFERASE 1); S-adenosylmethionine-dependent methyltransferase/ indole acetic acid carboxyl methyltransferase  note IAA CARBOXYLMETHYLTRANSFERASE 1 (IAMT1); FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, indole acetic acid carboxyl methyltransferase activity; INVOLVED IN: polarity specification of adaxial/abaxial axis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: GAMT2 (GIBBERELLIC ACID METHYLTRANSFERASE 2); S-adenosylmethionine-dependent methyltransferase/ gibberellin carboxyl-O-methyltransferase (TAIR:AT5G56300.1); Has 628 Blast hits to 618 proteins in 99 species: Archae - 0; Bacteria - 52; Metazoa - 12; Fungi - 3; Plants - 445; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT5G55250.2p  transcript_id AT5G55250.2  protein_id AT5G55250.2p  transcript_id AT5G55250.2  
At5g55250	chr5:022410744	0.0	C/22410744-22410854,22409875-22410294,22409326-22409601,22407589-22407942	AT5G55250.1  CDS  gene_syn IAA CARBOXYLMETHYLTRANSFERASE 1, IAMT1, MCO15.20, MCO15_20  gene IAMT1  function Encodes an enzyme which specifically converts IAA to its methyl ester form MelIAA. This gene belongs to the family of carboxyl methyltransferases whose members catalyze the transfer of the methyl group from S-adenosyl-L-methionine to carboxylic acid-containing substrates to form small molecule methyl esters. Expression of TCP genes is downregulated in mutant iamt1-D.  go_component cellular_component|GO:0005575||ND  go_process polarity specification of adaxial/abaxial axis|GO:0009944|16169896|IMP  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757|11287667|IMP  go_function indole acetic acid carboxyl methyltransferase activity|GO:0051749|12897246|IDA  product IAMT1 (IAA CARBOXYLMETHYLTRANSFERASE 1); S-adenosylmethionine-dependent methyltransferase/ indole acetic acid carboxyl methyltransferase  note IAA CARBOXYLMETHYLTRANSFERASE 1 (IAMT1); FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, indole acetic acid carboxyl methyltransferase activity; INVOLVED IN: polarity specification of adaxial/abaxial axis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: GAMT2 (GIBBERELLIC ACID METHYLTRANSFERASE 2); S-adenosylmethionine-dependent methyltransferase/ gibberellin carboxyl-O-methyltransferase (TAIR:AT5G56300.1); Has 638 Blast hits to 626 proteins in 100 species: Archae - 0; Bacteria - 52; Metazoa - 12; Fungi - 3; Plants - 450; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).  protein_id AT5G55250.1p  transcript_id AT5G55250.1  protein_id AT5G55250.1p  transcript_id AT5G55250.1  
At5g55260	chr5:022416808	0.0	W/22416808-22416948,22417303-22417455,22417579-22417641,22417717-22417802,22417896-22417971,22418055-22418323,22418416-22418494,22418571-22418621	AT5G55260.1  CDS  gene_syn MCO15.21, MCO15_21, PPX-2, PPX2, PROTEIN PHOSPHATASE X -2, PROTEIN PHOSPHATASE X 2  gene PPX2  function Encodes a protein with similarity to the catalytic subunit of the mammalian PPX protein phospatase.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722|8292782|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PPX2 (PROTEIN PHOSPHATASE X 2); protein serine/threonine phosphatase  note PROTEIN PHOSPHATASE X 2 (PPX2); FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: PPX1 (PROTEIN PHOSPHATASE X 1); protein serine/threonine phosphatase (TAIR:AT4G26720.1); Has 5328 Blast hits to 5200 proteins in 360 species: Archae - 49; Bacteria - 167; Metazoa - 2050; Fungi - 934; Plants - 603; Viruses - 10; Other Eukaryotes - 1515 (source: NCBI BLink).  protein_id AT5G55260.1p  transcript_id AT5G55260.1  protein_id AT5G55260.1p  transcript_id AT5G55260.1  
At5g55270	chr5:022419218	0.0	W/22419218-22420303	AT5G55270.1  CDS  gene_syn MCO15.22, MCO15_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55890.1); Has 121 Blast hits to 120 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G55270.1p  transcript_id AT5G55270.1  protein_id AT5G55270.1p  transcript_id AT5G55270.1  
At5g55280	chr5:022422234	0.0	C/22422234-22422527,22422032-22422131,22421709-22421938,22421452-22421619,22421112-22421345,22420740-22421015	AT5G55280.1  CDS  gene_syn ATFTSZ1-1, CHLOROPLAST FTSZ, CPFTSZ, FTSZ1-1, MCO15.23, MCO15_23  gene FTSZ1-1  function Encodes one of two FtsZ proteins, tubulin-like proteins, in Arabidopsis. It is involved in chloroplast division.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast stroma|GO:0009570|11743110|IDA  go_process chloroplast fission|GO:0010020|9836740|IMP  go_process plastid fission|GO:0043572|17468127|IMP  go_function structural molecule activity|GO:0005198||ISS  go_function protein binding|GO:0005515|16146521|IPI  product FTSZ1-1; protein binding / structural molecule  note FTSZ1-1; FUNCTIONS IN: protein binding, structural molecule activity; INVOLVED IN: chloroplast fission, plastid fission; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cell division protein FtsZ, N-terminal (InterPro:IPR000158), Tubulin/FtsZ, GTPase (InterPro:IPR003008), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: FTSZ2-2; GTP binding / GTPase/ structural molecule (TAIR:AT3G52750.1); Has 7691 Blast hits to 7691 proteins in 1852 species: Archae - 293; Bacteria - 3624; Metazoa - 6; Fungi - 0; Plants - 102; Viruses - 0; Other Eukaryotes - 3666 (source: NCBI BLink).  protein_id AT5G55280.1p  transcript_id AT5G55280.1  protein_id AT5G55280.1p  transcript_id AT5G55280.1  
At5g55290	chr5:022423989	0.0	C/22423989-22424086,22423457-22423504,22423037-22423103	AT5G55290.1  CDS  gene_syn MCO15.24, MCO15_24  go_component vacuole|GO:0005773|15215502|IDA  go_process ATP hydrolysis coupled proton transport|GO:0015991||IEA  go_function hydrogen ion transmembrane transporter activity|GO:0015078||IEA  product ATP synthase subunit H family protein  note ATP synthase subunit H family protein; FUNCTIONS IN: hydrogen ion transmembrane transporter activity; INVOLVED IN: ATP hydrolysis coupled proton transport; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, V0 complex, subunit E (InterPro:IPR008389); BEST Arabidopsis thaliana protein match is: ATP synthase subunit H family protein (TAIR:AT4G26710.2); Has 207 Blast hits to 207 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 141; Fungi - 12; Plants - 37; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT5G55290.1p  transcript_id AT5G55290.1  protein_id AT5G55290.1p  transcript_id AT5G55290.1  
At5g55290	chr5:022423989	0.0	C/22423989-22424086,22423457-22423504,22423037-22423103	AT5G55290.2  CDS  gene_syn MCO15.24, MCO15_24  go_process ATP hydrolysis coupled proton transport|GO:0015991||IEA  go_function hydrogen ion transmembrane transporter activity|GO:0015078||IEA  product ATP synthase subunit H family protein  note ATP synthase subunit H family protein; FUNCTIONS IN: hydrogen ion transmembrane transporter activity; INVOLVED IN: ATP hydrolysis coupled proton transport; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, V0 complex, subunit E (InterPro:IPR008389); BEST Arabidopsis thaliana protein match is: ATP synthase subunit H family protein (TAIR:AT4G26710.2).  protein_id AT5G55290.2p  transcript_id AT5G55290.2  protein_id AT5G55290.2p  transcript_id AT5G55290.2  
At5g55300	chr5:022427825	0.0	C/22427825-22429045,22427475-22427669,22427272-22427352,22427141-22427200,22426917-22427011,22426673-22426829,22426466-22426591,22426260-22426340,22426068-22426158,22425846-22425979,22425638-22425706,22425459-22425548,22425249-22425352,22424997-22425165,22424837-22424914	AT5G55300.1  CDS  gene_syn DNA TOPOISOMERASE 1 BETA, DNA TOPOISOMERASE I ALPHA, MTE17.1, MTE17_1, TOP1, TOP1ALPHA, TOP1BETA, TOPOISOMERASE 1  gene TOP1ALPHA  function Encodes a type-I DNA topoisomerase I. Disruptions in this gene affect phyllotaxis and plant architecture suggesting that the gene plays a critical role in the maintenance of a regular pattern of organ initiation. Isolated as a protein oxidized during seed germination; proteomics approach revealed differences in de novo synthesis levels of this protein in condition with vs. without salicylic acid in the period from 0 to 40 hrs. following seed imbibition.  go_component chromosome|GO:0005694||IEA  go_process DNA metabolic process|GO:0006259||ISS  go_process DNA topological change|GO:0006265||ISS  go_process shoot morphogenesis|GO:0010016|12215507|IMP  go_process flower morphogenesis|GO:0048439|12215507|IMP  go_process organ formation|GO:0048645|12215507|IMP  go_function DNA topoisomerase type I activity|GO:0003917||IGI  go_function DNA topoisomerase type I activity|GO:0003917||ISS  product TOP1ALPHA (DNA TOPOISOMERASE I ALPHA); DNA topoisomerase type I  note DNA TOPOISOMERASE I ALPHA (TOP1ALPHA); FUNCTIONS IN: DNA topoisomerase type I activity; INVOLVED IN: organ formation, DNA topological change, shoot morphogenesis, flower morphogenesis, DNA metabolic process; LOCATED IN: chromosome; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase I, DNA binding, mixed alpha/beta motif, eukaryotic-type (InterPro:IPR013030), DNA topoisomerase I, DNA binding, eukaryotic-type (InterPro:IPR008336), DNA topoisomerase I, C-terminal (InterPro:IPR001631), DNA topoisomerase I, active site (InterPro:IPR018521), DNA topoisomerase I, catalytic core, alpha/beta subdomain, eukaryotic-type (InterPro:IPR014727), DNA topoisomerase I, catalytic core, eukaryotic-type (InterPro:IPR013500), DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type (InterPro:IPR014711), DNA topoisomerase I, C-terminal, eukaryotic-type (InterPro:IPR013499), DNA breaking-rejoining enzyme, catalytic core (InterPro:IPR011010); BEST Arabidopsis thaliana protein match is: TOP1BETA (DNA TOPOISOMERASE 1 BETA); DNA topoisomerase type I (TAIR:AT5G55310.1); Has 9158 Blast hits to 5855 proteins in 426 species: Archae - 8; Bacteria - 636; Metazoa - 3994; Fungi - 1169; Plants - 266; Viruses - 171; Other Eukaryotes - 2914 (source: NCBI BLink).  protein_id AT5G55300.1p  transcript_id AT5G55300.1  protein_id AT5G55300.1p  transcript_id AT5G55300.1  
At5g55310	chr5:022433376	0.0	C/22433376-22434590,22433032-22433226,22432861-22432941,22432721-22432780,22432470-22432564,22432226-22432382,22432012-22432137,22431752-22431832,22431515-22431605,22431294-22431427,22431148-22431216,22430989-22431078,22430800-22430903,22430550-22430718,22430389-22430475	AT5G55310.1  CDS  gene_syn DNA TOPOISOMERASE 1 BETA, DNA TOPOISOMERASE I ALPHA, MTE17.2, MTE17_2, TOP1, TOP1ALPHA, TOP1BETA, TOPOISOMERASE 1  gene TOP1BETA  function Encodes one of two Arabidopsis type-I DNA topoisomerase I genes. Reducing the level of expression of this gene in a top1alpha (At5g55300) mutant background causes seedling lethality.  go_component membrane|GO:0016020|17432890|IDA  go_process DNA topological change|GO:0006265|12215507|IC  go_function DNA topoisomerase type I activity|GO:0003917|12215507|ISS  product TOP1BETA (DNA TOPOISOMERASE 1 BETA); DNA topoisomerase type I  note DNA TOPOISOMERASE 1 BETA (TOP1BETA); FUNCTIONS IN: DNA topoisomerase type I activity; INVOLVED IN: DNA topological change; LOCATED IN: membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase I, DNA binding, mixed alpha/beta motif, eukaryotic-type (InterPro:IPR013030), DNA topoisomerase I, DNA binding, eukaryotic-type (InterPro:IPR008336), DNA topoisomerase I, C-terminal (InterPro:IPR001631), DNA topoisomerase I, active site (InterPro:IPR018521), DNA topoisomerase I, catalytic core, alpha/beta subdomain, eukaryotic-type (InterPro:IPR014727), DNA topoisomerase I, catalytic core, eukaryotic-type (InterPro:IPR013500), DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type (InterPro:IPR014711), DNA topoisomerase I, C-terminal, eukaryotic-type (InterPro:IPR013499), DNA breaking-rejoining enzyme, catalytic core (InterPro:IPR011010); BEST Arabidopsis thaliana protein match is: TOP1ALPHA (DNA TOPOISOMERASE I ALPHA); DNA topoisomerase type I (TAIR:AT5G55300.1); Has 8386 Blast hits to 4340 proteins in 420 species: Archae - 6; Bacteria - 456; Metazoa - 3100; Fungi - 946; Plants - 191; Viruses - 161; Other Eukaryotes - 3526 (source: NCBI BLink).  protein_id AT5G55310.1p  transcript_id AT5G55310.1  protein_id AT5G55310.1p  transcript_id AT5G55310.1  
At5g55320	chr5:022435680	0.0	C/22435680-22436699	AT5G55320.1  CDS  gene_syn MTE17.3, MTE17_3  go_function acyltransferase activity|GO:0008415||ISS  product membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related  note membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related; FUNCTIONS IN: acyltransferase activity; EXPRESSED IN: leaf whorl, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Wax synthase (InterPro:IPR017088), Membrane bound O-acyl transferase, MBOAT (InterPro:IPR004299); BEST Arabidopsis thaliana protein match is: membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related (TAIR:AT5G55350.1); Has 567 Blast hits to 565 proteins in 194 species: Archae - 0; Bacteria - 367; Metazoa - 0; Fungi - 18; Plants - 113; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT5G55320.1p  transcript_id AT5G55320.1  protein_id AT5G55320.1p  transcript_id AT5G55320.1  
At5g55330	chr5:022437825	0.0	C/22437825-22438865	AT5G55330.1  CDS  gene_syn MTE17.4, MTE17_4  go_component thylakoid|GO:0009579|14729914|IDA  go_process biological_process|GO:0008150||ND  go_function acyltransferase activity|GO:0008415||ISS  product membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related  note membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Wax synthase (InterPro:IPR017088), Membrane bound O-acyl transferase, MBOAT (InterPro:IPR004299); BEST Arabidopsis thaliana protein match is: long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein (TAIR:AT5G55340.1); Has 529 Blast hits to 527 proteins in 187 species: Archae - 0; Bacteria - 348; Metazoa - 0; Fungi - 14; Plants - 113; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT5G55330.1p  transcript_id AT5G55330.1  protein_id AT5G55330.1p  transcript_id AT5G55330.1  
At5g55340	chr5:022439985	0.0	C/22439985-22440986	AT5G55340.1  CDS  gene_syn MTE17.5, MTE17_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function acyltransferase activity|GO:0008415||ISS  product long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein  note long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Wax synthase (InterPro:IPR017088); BEST Arabidopsis thaliana protein match is: membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related (TAIR:AT5G55350.1); Has 319 Blast hits to 317 proteins in 93 species: Archae - 0; Bacteria - 150; Metazoa - 0; Fungi - 16; Plants - 113; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT5G55340.1p  transcript_id AT5G55340.1  protein_id AT5G55340.1p  transcript_id AT5G55340.1  
At5g55350	chr5:022442356	0.0	C/22442356-22443393	AT5G55350.1  CDS  gene_syn MTE17.6, MTE17_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function acyltransferase activity|GO:0008415||ISS  product membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related  note membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Wax synthase (InterPro:IPR017088); BEST Arabidopsis thaliana protein match is: long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein (TAIR:AT5G55360.1); Has 638 Blast hits to 636 proteins in 216 species: Archae - 0; Bacteria - 424; Metazoa - 0; Fungi - 21; Plants - 113; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT5G55350.1p  transcript_id AT5G55350.1  protein_id AT5G55350.1p  transcript_id AT5G55350.1  
At5g55360	chr5:022443724	0.0	C/22443724-22444752	AT5G55360.1  CDS  gene_syn MTE17.7, MTE17_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function acyltransferase activity|GO:0008415||ISS  product long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein  note long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Wax synthase (InterPro:IPR017088); BEST Arabidopsis thaliana protein match is: membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related (TAIR:AT5G55350.1); Has 323 Blast hits to 321 proteins in 96 species: Archae - 0; Bacteria - 158; Metazoa - 0; Fungi - 14; Plants - 113; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT5G55360.1p  transcript_id AT5G55360.1  protein_id AT5G55360.1p  transcript_id AT5G55360.1  
At5g55370	chr5:022445085	0.0	C/22445085-22446116	AT5G55370.1  CDS  gene_syn MTE17.8, MTE17_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function acyltransferase activity|GO:0008415||ISS  product long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein  note long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Wax synthase (InterPro:IPR017088); BEST Arabidopsis thaliana protein match is: membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related (TAIR:AT5G55380.1); Has 703 Blast hits to 699 proteins in 222 species: Archae - 0; Bacteria - 488; Metazoa - 0; Fungi - 19; Plants - 113; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT5G55370.1p  transcript_id AT5G55370.1  protein_id AT5G55370.1p  transcript_id AT5G55370.1  
At5g55380	chr5:022446846	0.0	C/22446846-22447871	AT5G55380.1  CDS  gene_syn MTE17.9, MTE17_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function acyltransferase activity|GO:0008415||ISS  product membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related  note membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Wax synthase (InterPro:IPR017088), Membrane bound O-acyl transferase, MBOAT (InterPro:IPR004299); BEST Arabidopsis thaliana protein match is: long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein (TAIR:AT5G55370.1); Has 590 Blast hits to 588 proteins in 207 species: Archae - 0; Bacteria - 386; Metazoa - 0; Fungi - 24; Plants - 112; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT5G55380.1p  transcript_id AT5G55380.1  protein_id AT5G55380.1p  transcript_id AT5G55380.1  
At5g55390	chr5:022453996	0.0	C/22453996-22454414,22453805-22453901,22453521-22453574,22453272-22453408,22452789-22452885,22452578-22452679,22452226-22452470,22452056-22452145,22451403-22451975,22451185-22451335,22451003-22451104,22450814-22450906,22450453-22450494,22450180-22450290,22449965-22450036,22449743-22449861,22449574-22449637,22448152-22449477	AT5G55390.1  CDS  gene_syn EDM2, MTE17.10, MTE17_10  gene EDM2  function Encodes EDM2 (enhanced downy mildew 2). The predicted protein bears typical features of transcriptional regulators. EDM2 contains two putative bipartite nuclear localization signals (NLS) two zinc-finger-like motifs, a Proline-rich region and a large aspartic acid-rich region. Both zinc-finger-like stretches resemble the PHD (plant homeodomain) finger motif. Mutations in EDM2 comprise RPP7 mediated resistance against Hyaloperonospora parasitica isolate Hiks1 (HpHiks1). EDM2 may function as a direct or indirect regulator of RPP7 expression.  go_process signal transduction|GO:0007165|17253987|IMP  go_process defense response to fungus|GO:0050832|17253987|IMP  go_function transcription factor activity|GO:0003700|17253987|ISS  product EDM2; transcription factor  note EDM2; FUNCTIONS IN: transcription factor activity; INVOLVED IN: signal transduction, defense response to fungus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: ELP1 (EDM2-LIKE PROTEIN1); protein binding / zinc ion binding (TAIR:AT5G48090.2); Has 628 Blast hits to 617 proteins in 99 species: Archae - 0; Bacteria - 15; Metazoa - 348; Fungi - 65; Plants - 122; Viruses - 2; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT5G55390.1p  transcript_id AT5G55390.1  protein_id AT5G55390.1p  transcript_id AT5G55390.1  
At5g55400	chr5:022458864	0.0	C/22458864-22458950,22458603-22458779,22458278-22458516,22458000-22458171,22457859-22457897,22457715-22457783,22457512-22457628,22457124-22457335,22456891-22457043,22456604-22456803,22456346-22456503,22456156-22456252,22455955-22456046,22455535-22455867	AT5G55400.1  CDS  gene_syn MTE17.11, MTE17_11  go_component vacuole|GO:0005773|15539469|IDA  go_function actin binding|GO:0003779||IEA  product fimbrin-like protein, putative  note fimbrin-like protein, putative; FUNCTIONS IN: actin binding; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Actinin-type, actin-binding, conserved site (InterPro:IPR001589), EF-HAND 1 (InterPro:IPR018247), Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715); BEST Arabidopsis thaliana protein match is: ATFIM1; actin binding (TAIR:AT4G26700.2); Has 4936 Blast hits to 2333 proteins in 172 species: Archae - 2; Bacteria - 71; Metazoa - 2845; Fungi - 408; Plants - 86; Viruses - 0; Other Eukaryotes - 1524 (source: NCBI BLink).  protein_id AT5G55400.1p  transcript_id AT5G55400.1  protein_id AT5G55400.1p  transcript_id AT5G55400.1  
At5g55410	chr5:022460677	0.0	W/22460677-22460995,22461077-22461081	AT5G55410.1  CDS  gene_syn MTE17.12, MTE17_12  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT5G55450.1); Has 69 Blast hits to 69 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G55410.1p  transcript_id AT5G55410.1  protein_id AT5G55410.1p  transcript_id AT5G55410.1  
At5g55410	chr5:022460677	0.0	W/22460677-22461009	AT5G55410.2  CDS  gene_syn MTE17.12, MTE17_12  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT5G55450.1); Has 69 Blast hits to 69 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G55410.2p  transcript_id AT5G55410.2  protein_id AT5G55410.2p  transcript_id AT5G55410.2  
At5g55420	chr5:022461840	0.0	W/22461840-22462156	AT5G55420.1  pseudogenic_transcript  pseudo  gene_syn MTE17.13, MTE17_13  function Encodes a Protease inhibitor/seed storage/LTP family protein [pseudogene]  
At5g55430	chr5:022464750	0.0	W/22464750-22465199	AT5G55430.1  CDS  gene_syn MTE17.14, MTE17_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 25044 Blast hits to 4261 proteins in 267 species: Archae - 28; Bacteria - 285; Metazoa - 17761; Fungi - 1126; Plants - 637; Viruses - 654; Other Eukaryotes - 4553 (source: NCBI BLink).  protein_id AT5G55430.1p  transcript_id AT5G55430.1  protein_id AT5G55430.1p  transcript_id AT5G55430.1  
At5g55440	chr5:022465718	0.0	W/22465718-22465753,22465843-22466555,22466641-22466989	AT5G55440.1  CDS  gene_syn MTE17.15, MTE17_15  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G67040.1); Has 153 Blast hits to 150 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G55440.1p  transcript_id AT5G55440.1  protein_id AT5G55440.1p  transcript_id AT5G55440.1  
At5g55450	chr5:022467560	0.0	W/22467560-22467874	AT5G55450.1  CDS  gene_syn MTE17.16, MTE17_16  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||ISS  go_process response to other organism|GO:0051707|16531493|IEP  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: response to other organism, lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT5G55410.2); Has 77 Blast hits to 77 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G55450.1p  transcript_id AT5G55450.1  protein_id AT5G55450.1p  transcript_id AT5G55450.1  
At5g55460	chr5:022468698	0.0	W/22468698-22469013,22469120-22469133	AT5G55460.1  CDS  gene_syn MTE17.17, MTE17_17  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT5G55410.2); Has 71 Blast hits to 71 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G55460.1p  transcript_id AT5G55460.1  protein_id AT5G55460.1p  transcript_id AT5G55460.1  
At5g55470	chr5:022472421	0.0	C/22472421-22472585,22472192-22472310,22471997-22472094,22471829-22471888,22471684-22471730,22471408-22471602,22471281-22471327,22471109-22471175,22470912-22471012,22470726-22470827,22470319-22470463,22470141-22470203,22469946-22470029,22469553-22469849	AT5G55470.1  CDS  gene_syn ATNHX3, MTE17.18, MTE17_18, NHX3, SODIUM HYDROGEN EXCHANGER 3  gene ATNHX3  function member of Sodium proton exchanger family  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812||IEA  go_process sodium ion transport|GO:0006814||IEA  go_process regulation of pH|GO:0006885||IEA  go_process sodium ion transport|GO:0006814||ISS  go_function sodium ion transmembrane transporter activity|GO:0015081|11395435|ISS  go_function sodium ion transmembrane transporter activity|GO:0015081||ISS  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product ATNHX3; sodium ion transmembrane transporter/ sodium:hydrogen antiporter  note ATNHX3; FUNCTIONS IN: sodium:hydrogen antiporter activity, sodium ion transmembrane transporter activity; INVOLVED IN: cation transport, sodium ion transport, regulation of pH; LOCATED IN: integral to membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Na+/H+ exchanger, subfamily (InterPro:IPR004709), Cation/H+ exchanger, conserved region (InterPro:IPR018422), Cation/H+ exchanger (InterPro:IPR006153), Na+/H+ exchanger, isoforms 1-4, conserved region (InterPro:IPR018407), Na+/H+ exchanger, conserved region (InterPro:IPR018406); BEST Arabidopsis thaliana protein match is: NHX1 (NA+/H+ EXCHANGER); protein binding / sodium ion transmembrane transporter/ sodium:hydrogen antiporter (TAIR:AT5G27150.1); Has 3637 Blast hits to 3630 proteins in 976 species: Archae - 46; Bacteria - 2149; Metazoa - 707; Fungi - 89; Plants - 280; Viruses - 0; Other Eukaryotes - 366 (source: NCBI BLink).  protein_id AT5G55470.1p  transcript_id AT5G55470.1  protein_id AT5G55470.1p  transcript_id AT5G55470.1  
At5g55480	chr5:022474277	0.0	W/22474277-22474415,22474615-22474908,22475135-22475250,22475337-22475835,22475940-22475978,22476085-22476369,22476695-22476840,22476944-22477430,22477524-22477819	AT5G55480.1  CDS  gene_syn MTE17.19, MTE17_19, SHV3-LIKE 1, SVL1  gene SVL1  function Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component anchored to plasma membrane|GO:0046658|12805588|IDA  go_function phosphoric diester hydrolase activity|GO:0008081||IEA  go_function glycerophosphodiester phosphodiesterase activity|GO:0008889||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process glycerol metabolic process|GO:0006071||ISS  go_process trichome differentiation|GO:0010026|18718934|IGI  go_process guard cell morphogenesis|GO:0010442|18718934|IGI  go_process plant-type cell wall cellulose metabolic process|GO:0052541|18718934|IGI  go_process cell wall pectin metabolic process|GO:0052546|18718934|IGI  go_function glycerophosphodiester phosphodiesterase activity|GO:0008889||ISS  product SVL1 (SHV3-LIKE 1); glycerophosphodiester phosphodiesterase/ phosphoric diester hydrolase  note SHV3-LIKE 1 (SVL1); FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: trichome differentiation, cell wall pectin metabolic process, glycerol metabolic process, guard cell morphogenesis, plant-type cell wall cellulose metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: SHV3 (SHAVEN 3); glycerophosphodiester phosphodiesterase/ kinase (TAIR:AT4G26690.1); Has 1110 Blast hits to 693 proteins in 250 species: Archae - 0; Bacteria - 860; Metazoa - 10; Fungi - 0; Plants - 182; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT5G55480.1p  transcript_id AT5G55480.1  protein_id AT5G55480.1p  transcript_id AT5G55480.1  
At5g55490	chr5:022480593	0.0	C/22480593-22481071,22479911-22480498,22479688-22479814,22479414-22479600,22479175-22479319,22478822-22479077	AT5G55490.1  CDS  gene_syn ATGEX1, GAMETE EXPRESSED PROTEIN 1, GEX1, MTE17.20, MTE17_20  gene GEX1  function Encodes a transmembrane domain containing protein that is expressed in pollen germ cells.  go_component integral to plasma membrane|GO:0005887|16055690|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product GEX1 (GAMETE EXPRESSED PROTEIN 1)  note GAMETE EXPRESSED PROTEIN 1 (GEX1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to plasma membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: LINC3 (LITTLE NUCLEI3) (TAIR:AT1G68790.1); Has 6322 Blast hits to 4654 proteins in 498 species: Archae - 82; Bacteria - 812; Metazoa - 2878; Fungi - 413; Plants - 154; Viruses - 18; Other Eukaryotes - 1965 (source: NCBI BLink).  protein_id AT5G55490.1p  transcript_id AT5G55490.1  protein_id AT5G55490.1p  transcript_id AT5G55490.1  
At5g55500	chr5:022482386	0.0	W/22482386-22483081,22483318-22483467,22483659-22484417	AT5G55500.1  CDS  gene_syn ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE, ATXYLT, XYLT  gene XYLT  function Encodes a beta-1,2-xylosyltransferase that is glycosylated at two positions.  go_component Golgi membrane|GO:0000139|10781814|ISS  go_component Golgi membrane|GO:0000139|12175019|IDA  go_component Golgi medial cisterna|GO:0005797|12943552|IDA  go_process protein amino acid N-linked glycosylation|GO:0006487|10781814|IDA  go_process protein amino acid N-linked glycosylation|GO:0006487|15686448|IDA  go_process posttranslational protein targeting to membrane, translocation|GO:0031204|15686448|IDA  go_function xylosyltransferase activity|GO:0042285|10781814|IDA  product XYLT (ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE); xylosyltransferase  note ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE (XYLT); FUNCTIONS IN: xylosyltransferase activity; INVOLVED IN: posttranslational protein targeting to membrane, translocation, protein amino acid N-linked glycosylation; LOCATED IN: Golgi membrane, Golgi medial cisterna; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 197 Blast hits to 197 proteins in 55 species: Archae - 0; Bacteria - 37; Metazoa - 47; Fungi - 9; Plants - 39; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT5G55500.1p  transcript_id AT5G55500.1  protein_id AT5G55500.1p  transcript_id AT5G55500.1  
At5g55505	chr5:022484770	0.0	C/22484770-22484842	AT5G55505.1  tRNA  gene_syn 67861.TRNA-ALA-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: AGC)  transcript_id AT5G55505.1  
At5g55507	chr5:022485286	0.0	C/22485286-22485561	AT5G55507.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 37 Blast hits to 31 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 8; Plants - 2; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT5G55507.1p  transcript_id AT5G55507.1  protein_id AT5G55507.1p  transcript_id AT5G55507.1  
At5g55508	chr5:022485872	0.0	W/22485872-22486015	AT5G55508.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G55508.1p  transcript_id AT5G55508.1  protein_id AT5G55508.1p  transcript_id AT5G55508.1  
At5g55510	chr5:022487715	0.0	C/22487715-22487916,22487268-22487332,22487077-22487149,22486930-22486983,22486525-22486775	AT5G55510.1  CDS  gene_syn MTE17.23, MTE17_23  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_process protein transport|GO:0015031||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744||ISS  go_process protein transport|GO:0015031||ISS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter  note P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter; FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: mitochondrial inner membrane presequence translocase complex, chloroplast envelope; CONTAINS InterPro DOMAIN/s: Mitochondrial import inner membrane translocase, subunit Tim17/22 (InterPro:IPR003397); BEST Arabidopsis thaliana protein match is: mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (TAIR:AT4G26670.1); Has 385 Blast hits to 385 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 152; Fungi - 135; Plants - 78; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT5G55510.1p  transcript_id AT5G55510.1  protein_id AT5G55510.1p  transcript_id AT5G55510.1  
At5g55520	chr5:022490891	0.0	C/22490891-22491187,22490656-22490754,22489782-22490585,22489586-22489684,22489452-22489505,22488594-22489364,22488205-22488498	AT5G55520.1  CDS  gene_syn MTE17.24, MTE17_24  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin-related (InterPro:IPR010544); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26660.1); Has 26712 Blast hits to 16371 proteins in 1006 species: Archae - 217; Bacteria - 1993; Metazoa - 14955; Fungi - 1858; Plants - 946; Viruses - 54; Other Eukaryotes - 6689 (source: NCBI BLink).  protein_id AT5G55520.1p  transcript_id AT5G55520.1  protein_id AT5G55520.1p  transcript_id AT5G55520.1  
At5g55520	chr5:022490891	0.0	C/22490891-22491187,22490656-22490754,22489782-22490585,22489586-22489684,22489464-22489505,22488594-22489364,22488205-22488498	AT5G55520.2  CDS  gene_syn MTE17.24, MTE17_24  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin-related (InterPro:IPR010544); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26660.1); Has 25541 Blast hits to 15818 proteins in 1005 species: Archae - 217; Bacteria - 1869; Metazoa - 14348; Fungi - 1769; Plants - 907; Viruses - 48; Other Eukaryotes - 6383 (source: NCBI BLink).  protein_id AT5G55520.2p  transcript_id AT5G55520.2  protein_id AT5G55520.2p  transcript_id AT5G55520.2  
At5g55530	chr5:022494439	0.0	W/22494439-22495656	AT5G55530.1  CDS  gene_syn MTE17.25, MTE17_25  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT1G50570.2); Has 506 Blast hits to 373 proteins in 95 species: Archae - 0; Bacteria - 131; Metazoa - 90; Fungi - 95; Plants - 72; Viruses - 6; Other Eukaryotes - 112 (source: NCBI BLink).  protein_id AT5G55530.1p  transcript_id AT5G55530.1  protein_id AT5G55530.1p  transcript_id AT5G55530.1  
At5g55530	chr5:022494439	0.0	W/22494439-22495656	AT5G55530.2  CDS  gene_syn MTE17.25, MTE17_25  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT1G50570.2); Has 506 Blast hits to 373 proteins in 95 species: Archae - 0; Bacteria - 131; Metazoa - 90; Fungi - 95; Plants - 72; Viruses - 6; Other Eukaryotes - 112 (source: NCBI BLink).  protein_id AT5G55530.2p  transcript_id AT5G55530.2  protein_id AT5G55530.2p  transcript_id AT5G55530.2  
At5g55530	chr5:022494439	0.0	W/22494439-22495656	AT5G55530.3  CDS  gene_syn MTE17.25, MTE17_25  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT1G50570.2); Has 506 Blast hits to 373 proteins in 95 species: Archae - 0; Bacteria - 131; Metazoa - 90; Fungi - 95; Plants - 72; Viruses - 6; Other Eukaryotes - 112 (source: NCBI BLink).  protein_id AT5G55530.3p  transcript_id AT5G55530.3  protein_id AT5G55530.3p  transcript_id AT5G55530.3  
At5g55540	chr5:022497775	0.0	C/22497775-22500543,22496322-22497695	AT5G55540.1  CDS  gene_syn LOP1, LOPPED 1, MTE17.26, MTE17_26, TORNADO 1, TRN1  gene TRN1  function Encodes a large plant-specific protein of unknown function, with conserved domains also found in a variety of signaling proteins, In trn mutants, the leaf venation network had a severely reduced complexity: incomplete loops, no tertiary or quaternary veins, and vascular islands. The leaf laminas were asymmetric and narrow because of a severely reduced cell number. TRN1 is required for the maintenance of both the radial pattern of tissue differentiation in the root and for the subsequent circumferential pattern within the epidermis. Double mutant analysis showed that TRN1 and TRN2 act in the same pathway.  go_component cellular_component|GO:0005575||ND  go_process multidimensional cell growth|GO:0009825|8674420|IMP  go_process auxin polar transport|GO:0009926|16531491|IGI  go_process auxin polar transport|GO:0009926|8674420|IDA  go_process meristem structural organization|GO:0009933|10887093|IMP  go_process radial pattern formation|GO:0009956|10887093|IMP  go_process leaf morphogenesis|GO:0009965|8674420|IMP  go_process leaf vascular tissue pattern formation|GO:0010305|16531491|IMP  go_function molecular_function|GO:0003674||ND  product TRN1 (TORNADO 1)  note TORNADO 1 (TRN1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 6 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: emb2004 (embryo defective 2004) (TAIR:AT1G10510.1); Has 2346 Blast hits to 1309 proteins in 124 species: Archae - 5; Bacteria - 113; Metazoa - 1501; Fungi - 16; Plants - 110; Viruses - 0; Other Eukaryotes - 601 (source: NCBI BLink).  protein_id AT5G55540.1p  transcript_id AT5G55540.1  protein_id AT5G55540.1p  transcript_id AT5G55540.1  
At5g55550	chr5:022503437	0.0	C/22503437-22503658,22502135-22503295	AT5G55550.2  CDS  gene_syn MTE17.27, MTE17_27  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT4G26650.2); Has 23061 Blast hits to 14997 proteins in 619 species: Archae - 8; Bacteria - 1772; Metazoa - 12479; Fungi - 2243; Plants - 3693; Viruses - 3; Other Eukaryotes - 2863 (source: NCBI BLink).  protein_id AT5G55550.2p  transcript_id AT5G55550.2  protein_id AT5G55550.2p  transcript_id AT5G55550.2  
At5g55550	chr5:022503437	0.0	C/22503437-22503658,22502135-22503295	AT5G55550.3  CDS  gene_syn MTE17.27, MTE17_27  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT4G26650.2); Has 23061 Blast hits to 14997 proteins in 619 species: Archae - 8; Bacteria - 1772; Metazoa - 12479; Fungi - 2243; Plants - 3693; Viruses - 3; Other Eukaryotes - 2863 (source: NCBI BLink).  protein_id AT5G55550.3p  transcript_id AT5G55550.3  protein_id AT5G55550.3p  transcript_id AT5G55550.3  
At5g55550	chr5:022503437	0.0	C/22503437-22503658,22502185-22503295,22502077-22502090	AT5G55550.1  CDS  gene_syn MTE17.27, MTE17_27  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT4G26650.2); Has 22820 Blast hits to 14858 proteins in 620 species: Archae - 8; Bacteria - 1772; Metazoa - 12442; Fungi - 2226; Plants - 3691; Viruses - 3; Other Eukaryotes - 2678 (source: NCBI BLink).  protein_id AT5G55550.1p  transcript_id AT5G55550.1  protein_id AT5G55550.1p  transcript_id AT5G55550.1  
At5g55560	chr5:022507755	0.0	C/22507755-22507757,22506986-22507501,22506477-22506902	AT5G55560.1  CDS  gene_syn MWC10.1, MWC10_1  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: WNK3; kinase/ protein kinase (TAIR:AT3G48260.1); Has 73815 Blast hits to 73156 proteins in 2142 species: Archae - 34; Bacteria - 5316; Metazoa - 32065; Fungi - 6373; Plants - 15922; Viruses - 335; Other Eukaryotes - 13770 (source: NCBI BLink).  protein_id AT5G55560.1p  transcript_id AT5G55560.1  protein_id AT5G55560.1p  transcript_id AT5G55560.1  
At5g55565	chr5:022510219	0.0	C/22510219-22510413	AT5G55565.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G55565.1p  transcript_id AT5G55565.1  protein_id AT5G55565.1p  transcript_id AT5G55565.1  
At5g55570	chr5:022515008	0.0	C/22515008-22515260,22514873-22514922,22514720-22514801,22514587-22514633	AT5G55570.1  CDS  gene_syn MDF20.1, MDF20_1  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; Has 16 Blast hits to 16 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G55570.1p  transcript_id AT5G55570.1  protein_id AT5G55570.1p  transcript_id AT5G55570.1  
At5g55580	chr5:022515601	0.0	W/22515601-22515879,22515958-22516030,22516104-22516231,22516311-22517003,22517091-22517408	AT5G55580.1  CDS  gene_syn MDF20.2, MDF20_2  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial transcription termination factor family protein / mTERF family protein  note mitochondrial transcription termination factor family protein / mTERF family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: EMB2219 (embryo defective 2219) (TAIR:AT2G21710.1); Has 1289 Blast hits to 982 proteins in 133 species: Archae - 0; Bacteria - 2; Metazoa - 352; Fungi - 118; Plants - 564; Viruses - 4; Other Eukaryotes - 249 (source: NCBI BLink).  protein_id AT5G55580.1p  transcript_id AT5G55580.1  protein_id AT5G55580.1p  transcript_id AT5G55580.1  
At5g55590	chr5:022519911	0.0	W/22519911-22520269,22520636-22520831,22520930-22521133,22521227-22521462,22521552-22521699	AT5G55590.1  CDS  gene_syn MDF20.3, MDF20_3, QRT1, QUARTET 1  gene QRT1  function Encodes a protein with pectin methylesterase activity. No change in activity were detected in mutants defective in this gene, which was interpreted as a result of redundancy of product function with other pectin methylesterases. The gene product is required for pollen separation during normal development. In qrt mutants, the outer walls of the four meiotic products of the pollen mother cell are fused, and pollen grains are released in tetrads.May be required for cell type-specific pectin degradation.  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_process pectin catabolic process|GO:0045490|9744097|IMP  go_function pectinesterase activity|GO:0030599|16980565|IDA  go_function pectinesterase activity|GO:0030599||ISS  product QRT1 (QUARTET 1); pectinesterase  note QUARTET 1 (QRT1); FUNCTIONS IN: pectinesterase activity; INVOLVED IN: pectin catabolic process; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 5 post anthesis, petal differentiation and expansion stage, sepals enclosing floral bud, fruit development stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT5G47500.1); Has 1387 Blast hits to 1360 proteins in 262 species: Archae - 2; Bacteria - 422; Metazoa - 1; Fungi - 126; Plants - 836; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G55590.1p  transcript_id AT5G55590.1  protein_id AT5G55590.1p  transcript_id AT5G55590.1  
At5g55600	chr5:022524502	0.0	C/22524502-22524796,22524271-22524362,22524063-22524185,22523154-22523933,22522818-22523037,22522232-22522713	AT5G55600.1  CDS  gene_syn MDF20.4, MDF20_4  go_function DNA binding|GO:0003677||IEA  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein  note agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein; FUNCTIONS IN: RNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Bromo adjacent region (InterPro:IPR001025); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT1G68580.2); Has 297 Blast hits to 283 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 8; Plants - 156; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT5G55600.1p  transcript_id AT5G55600.1  protein_id AT5G55600.1p  transcript_id AT5G55600.1  
At5g55600	chr5:022524502	0.0	C/22524502-22524796,22524271-22524362,22524063-22524185,22523154-22523933,22522818-22523037,22522232-22522713	AT5G55600.2  CDS  gene_syn MDF20.4, MDF20_4  go_function DNA binding|GO:0003677||IEA  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein  note agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein; FUNCTIONS IN: RNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Bromo adjacent region (InterPro:IPR001025); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT1G68580.2); Has 297 Blast hits to 283 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 8; Plants - 156; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT5G55600.2p  transcript_id AT5G55600.2  protein_id AT5G55600.2p  transcript_id AT5G55600.2  
At5g55610	chr5:022525981	0.0	W/22525981-22526123,22526576-22526924,22527010-22527094,22527211-22527297,22527431-22527679,22527782-22527858	AT5G55610.1  CDS  gene_syn MDF20.5, MDF20_5  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  product unknown protein  note unknown protein; LOCATED IN: mitochondrion, chloroplast, plastid, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; Has 28 Blast hits to 27 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G55610.1p  transcript_id AT5G55610.1  protein_id AT5G55610.1p  transcript_id AT5G55610.1  
At5g55610	chr5:022525981	0.0	W/22525981-22526123,22526576-22526924,22527010-22527094,22527211-22527479	AT5G55610.2  CDS  gene_syn MDF20.5, MDF20_5  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  product unknown protein  note unknown protein; LOCATED IN: mitochondrion, plastid, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 25 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G55610.2p  transcript_id AT5G55610.2  protein_id AT5G55610.2p  transcript_id AT5G55610.2  
At5g55620	chr5:022530373	0.0	W/22530373-22530678	AT5G55620.1  CDS  gene_syn MDF20.6, MDF20_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09950.1); Has 47 Blast hits to 47 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G55620.1p  transcript_id AT5G55620.1  protein_id AT5G55620.1p  transcript_id AT5G55620.1  
At5g55630	chr5:022531718	0.0	W/22531718-22532643,22532728-22532893	AT5G55630.1  CDS  gene_syn ATKCO1, ATTPK1, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, KCO1, MDF20.7, MDF20_7, TANDEM PORE K+ CHANNEL 1, TPK1, TWO PORE K CHANNEL, TWO PORE K CHANNEL 1  gene ATKCO1  function Encodes AtTPK1 (KCO1), a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins. AtTPK1 is targeted to the vacuolar membrane. Forms homomeric ion channels in vivo. Voltage-independent and Ca2+-activated K+ channel. Activated by 14-3-3 proteins.  go_component vacuolar membrane|GO:0005774|11821043|IDA  go_component vacuolar membrane|GO:0005774|12148538|IDA  go_component vacuolar membrane|GO:0005774|17764516|IDA  go_process regulation of seed germination|GO:0010029|17563365|IMP  go_process regulation of stomatal movement|GO:0010119|17563365|IMP  go_process cellular potassium ion homeostasis|GO:0030007|17563365|IMP  go_process protein homooligomerization|GO:0051260|16984403|IPI  go_function ion channel activity|GO:0005216|16113216|IDA  go_function calcium-activated potassium channel activity|GO:0015269|9184204|IDA  go_function outward rectifier potassium channel activity|GO:0015271|9184204|IDA  go_function outward rectifier potassium channel activity|GO:0015271||ISS  product ATKCO1; calcium-activated potassium channel/ ion channel/ outward rectifier potassium channel  note ATKCO1; FUNCTIONS IN: outward rectifier potassium channel activity, ion channel activity, calcium-activated potassium channel activity; INVOLVED IN: regulation of seed germination, cellular potassium ion homeostasis, protein homooligomerization, regulation of stomatal movement; LOCATED IN: vacuolar membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), Potassium channel, two pore-domain (InterPro:IPR003280), Ion transport 2 (InterPro:IPR013099); BEST Arabidopsis thaliana protein match is: KCO5 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 5); outward rectifier potassium channel (TAIR:AT4G01840.1); Has 3291 Blast hits to 3186 proteins in 681 species: Archae - 86; Bacteria - 1220; Metazoa - 1128; Fungi - 128; Plants - 119; Viruses - 0; Other Eukaryotes - 610 (source: NCBI BLink).  protein_id AT5G55630.1p  transcript_id AT5G55630.1  protein_id AT5G55630.1p  transcript_id AT5G55630.1  
At5g55630	chr5:022531718	0.0	W/22531718-22532643,22532728-22532893	AT5G55630.2  CDS  gene_syn ATKCO1, ATTPK1, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, KCO1, MDF20.7, MDF20_7, TANDEM PORE K+ CHANNEL 1, TPK1, TWO PORE K CHANNEL, TWO PORE K CHANNEL 1  gene ATKCO1  function Encodes AtTPK1 (KCO1), a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins. AtTPK1 is targeted to the vacuolar membrane. Forms homomeric ion channels in vivo. Voltage-independent and Ca2+-activated K+ channel. Activated by 14-3-3 proteins.  go_component vacuolar membrane|GO:0005774|11821043|IDA  go_component vacuolar membrane|GO:0005774|12148538|IDA  go_component vacuolar membrane|GO:0005774|17764516|IDA  go_process regulation of seed germination|GO:0010029|17563365|IMP  go_process regulation of stomatal movement|GO:0010119|17563365|IMP  go_process cellular potassium ion homeostasis|GO:0030007|17563365|IMP  go_process protein homooligomerization|GO:0051260|16984403|IPI  go_function ion channel activity|GO:0005216|16113216|IDA  go_function calcium-activated potassium channel activity|GO:0015269|9184204|IDA  go_function outward rectifier potassium channel activity|GO:0015271|9184204|IDA  go_function outward rectifier potassium channel activity|GO:0015271||ISS  product ATKCO1; calcium-activated potassium channel/ ion channel/ outward rectifier potassium channel  note TWO PORE K CHANNEL (KCO1); FUNCTIONS IN: outward rectifier potassium channel activity, ion channel activity, calcium-activated potassium channel activity; INVOLVED IN: regulation of seed germination, cellular potassium ion homeostasis, protein homooligomerization, regulation of stomatal movement; LOCATED IN: vacuolar membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Potassium channel, two pore-domain (InterPro:IPR003280), EF-HAND 1 (InterPro:IPR018247), Ion transport 2 (InterPro:IPR013099); BEST Arabidopsis thaliana protein match is: KCO5 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 5); outward rectifier potassium channel (TAIR:AT4G01840.1); Has 3291 Blast hits to 3186 proteins in 681 species: Archae - 86; Bacteria - 1220; Metazoa - 1128; Fungi - 128; Plants - 119; Viruses - 0; Other Eukaryotes - 610 (source: NCBI BLink).  protein_id AT5G55630.2p  transcript_id AT5G55630.2  protein_id AT5G55630.2p  transcript_id AT5G55630.2  
At5g55640	chr5:022533866	0.0	C/22533866-22533923,22533617-22533717,22533244-22533534	AT5G55640.1  CDS  gene_syn MDF20.8, MDF20_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 59 Blast hits to 59 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G55640.1p  transcript_id AT5G55640.1  protein_id AT5G55640.1p  transcript_id AT5G55640.1  
At5g55650	chr5:022536360	0.0	W/22536360-22536824	AT5G55650.1  CDS  gene_syn MDF20.9, MDF20_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G55650.1p  transcript_id AT5G55650.1  protein_id AT5G55650.1p  transcript_id AT5G55650.1  
At5g55660	chr5:022539375	0.0	W/22539375-22540448,22540531-22540564,22540943-22541025,22541220-22541279,22541362-22541472,22541571-22541651,22541744-22541818,22541930-22542422,22542616-22542722,22542818-22542848,22542955-22543142	AT5G55660.1  CDS  gene_syn MDF20.10, MDF20_10  go_component mitochondrion|GO:0005739|14671022|IDA  product unknown protein  note LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26630.2); Has 348612 Blast hits to 121147 proteins in 2910 species: Archae - 1231; Bacteria - 38190; Metazoa - 148268; Fungi - 42547; Plants - 15024; Viruses - 2447; Other Eukaryotes - 100905 (source: NCBI BLink).  protein_id AT5G55660.1p  transcript_id AT5G55660.1  protein_id AT5G55660.1p  transcript_id AT5G55660.1  
At5g55670	chr5:022544669	0.0	C/22544669-22546801	AT5G55670.1  CDS  gene_syn MDF20.11, MDF20_11  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT1G13190.1); Has 39714 Blast hits to 21553 proteins in 936 species: Archae - 21; Bacteria - 7210; Metazoa - 18978; Fungi - 3959; Plants - 3841; Viruses - 192; Other Eukaryotes - 5513 (source: NCBI BLink).  protein_id AT5G55670.1p  transcript_id AT5G55670.1  protein_id AT5G55670.1p  transcript_id AT5G55670.1  
At5g55680	chr5:022547735	0.0	C/22547735-22548361	AT5G55680.1  CDS  gene_syn MDF20.12, MDF20_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; Has 642 Blast hits to 347 proteins in 83 species: Archae - 3; Bacteria - 174; Metazoa - 77; Fungi - 17; Plants - 19; Viruses - 6; Other Eukaryotes - 346 (source: NCBI BLink).  protein_id AT5G55680.1p  transcript_id AT5G55680.1  protein_id AT5G55680.1p  transcript_id AT5G55680.1  
At5g55690	chr5:022548790	0.0	C/22548790-22549623	AT5G55690.1  CDS  gene_syn MDF20.13, MDF20_13  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product MADS-box protein (AGL47)  note MADS-box protein (AGL47); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL82 (AGAMOUS-LIKE 82); DNA binding / transcription factor (TAIR:AT5G58890.1); Has 1675 Blast hits to 1673 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 414; Fungi - 86; Plants - 1148; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT5G55690.1p  transcript_id AT5G55690.1  protein_id AT5G55690.1p  transcript_id AT5G55690.1  
At5g55700	chr5:022551873	0.0	W/22551873-22552087,22552260-22552388,22552529-22552775,22553020-22553240,22553323-22553400,22553475-22553634,22553748-22554001,22554102-22554171,22554395-22554463,22554550-22554702	AT5G55700.1  CDS  gene_syn BAM4, BETA-AMYLASE 4, BETA-AMYLASE 6, BMY6, MDF20.14, MDF20_14  gene BAM4  function In vitro assay indicates no beta-amylase activity of BAM4. However mutation in BAM4 impairs starch breakdown. BAM4 may play a regulatory role.  go_function catalytic activity|GO:0003824||IEA  go_function beta-amylase activity|GO:0016161||IEA  go_function cation binding|GO:0043169||IEA  go_component chloroplast|GO:0009507|18390594|IDA  go_process starch catabolic process|GO:0005983|18390594|IMP  go_function beta-amylase activity|GO:0016161||ISS  product BAM4 (BETA-AMYLASE 4); beta-amylase/ catalytic/ cation binding  note BETA-AMYLASE 4 (BAM4); FUNCTIONS IN: cation binding, beta-amylase activity, catalytic activity; INVOLVED IN: starch catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 14B, plant (InterPro:IPR001371), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: CT-BMY (CHLOROPLAST BETA-AMYLASE); beta-amylase (TAIR:AT4G17090.1); Has 515 Blast hits to 514 proteins in 119 species: Archae - 0; Bacteria - 68; Metazoa - 0; Fungi - 0; Plants - 387; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT5G55700.1p  transcript_id AT5G55700.1  protein_id AT5G55700.1p  transcript_id AT5G55700.1  
At5g55710	chr5:022554995	0.0	C/22554995-22555624	AT5G55710.1  CDS  gene_syn MDF20.15, MDF20_15  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: tic20 protein-related (TAIR:AT2G47840.1); Has 268 Blast hits to 268 proteins in 76 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).  protein_id AT5G55710.1p  transcript_id AT5G55710.1  protein_id AT5G55710.1p  transcript_id AT5G55710.1  
At5g55720	chr5:022556047	0.0	W/22556047-22556861,22556954-22557092,22557272-22557496	AT5G55720.1  CDS  gene_syn MDF20.16, MDF20_16  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function lyase activity|GO:0016829||ISS  go_function pectate lyase activity|GO:0030570||ISS  product pectate lyase family protein  note pectate lyase family protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectate lyase family protein (TAIR:AT3G27400.1); Has 998 Blast hits to 993 proteins in 171 species: Archae - 0; Bacteria - 429; Metazoa - 0; Fungi - 164; Plants - 395; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G55720.1p  transcript_id AT5G55720.1  protein_id AT5G55720.1p  transcript_id AT5G55720.1  
At5g55730	chr5:022559751	0.0	C/22559751-22560392,22558375-22559007	AT5G55730.1  CDS  gene_syn FASCICLIN-LIKE ARAB INOGALACTAN 1, FLA1, MDF20.17, MDF20_17  gene FLA1  function fasciclin-like arabinogalactan-protein 1 (Fla1)  go_component cell wall|GO:0005618|15593128|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component anchored to plasma membrane|GO:0046658|12805588|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  product FLA1 (FASCICLIN-LIKE ARAB INOGALACTAN 1)  note FASCICLIN-LIKE ARAB INOGALACTAN 1 (FLA1); LOCATED IN: anchored to plasma membrane, cell wall, plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FLA2 (FASCICLIN-LIKE ARABINOGALACTAN 2) (TAIR:AT4G12730.1); Has 496 Blast hits to 496 proteins in 52 species: Archae - 0; Bacteria - 6; Metazoa - 2; Fungi - 16; Plants - 471; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G55730.1p  transcript_id AT5G55730.1  protein_id AT5G55730.1p  transcript_id AT5G55730.1  
At5g55740	chr5:022561941	0.0	C/22561941-22564433	AT5G55740.1  CDS  gene_syn CRR21, MDF20.18, MDF20_18, chlororespiratory reduction 21  gene CRR21  function Encodes a member of the E+ subgroup of the PPR protein family, containing the E and E+ motifs following a tandem array of PPR motifs. It also contains an unknown motif consisting of 15 aa, which is highly conserved in some PPR proteins, including CRR4. CRR21 is involved in RNA editing of the site 2 of ndhD (ndhD-2),which encodes a subunit of the NDH complex. The RNA editing changes aa 128 from Ser to Leu. Mutants have impaired NDH complex activity.  go_component chloroplast|GO:0009507||IEA  go_process mRNA modification|GO:0016556|17483454|IMP  product CRR21 (chlororespiratory reduction 21)  note chlororespiratory reduction 21 (CRR21); INVOLVED IN: mRNA modification; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G19720.1); Has 20362 Blast hits to 5717 proteins in 197 species: Archae - 2; Bacteria - 14; Metazoa - 139; Fungi - 182; Plants - 19408; Viruses - 0; Other Eukaryotes - 617 (source: NCBI BLink).  protein_id AT5G55740.1p  transcript_id AT5G55740.1  protein_id AT5G55740.1p  transcript_id AT5G55740.1  
At5g55750	chr5:022565955	0.0	C/22565955-22566021,22565740-22565844,22564838-22565193	AT5G55750.1  CDS  gene_syn MDF20.19, MDF20_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 12002 Blast hits to 5947 proteins in 441 species: Archae - 8; Bacteria - 923; Metazoa - 3562; Fungi - 1133; Plants - 4473; Viruses - 609; Other Eukaryotes - 1294 (source: NCBI BLink).  protein_id AT5G55750.1p  transcript_id AT5G55750.1  protein_id AT5G55750.1p  transcript_id AT5G55750.1  
At5g55760	chr5:022567282	0.0	W/22567282-22567380,22567947-22567976,22568086-22568178,22568381-22568500,22568619-22568719,22568840-22568948,22569064-22569143,22569271-22569349,22569505-22569558,22569688-22569784,22569923-22570005,22570083-22570150,22570227-22570329,22570411-22570716	AT5G55760.1  CDS  gene_syn SRT1, sirtuin 1  gene SRT1  function Encodes SRT1, a member of the SIR2 (sirtuin) family HDAC (histone deacetylase) (SRT1/AT5g55760, SRT2/AT5G09230).  go_process chromatin silencing|GO:0006342||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process protein amino acid deacetylation|GO:0006476||IEA  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function NAD-dependent histone deacetylase activity|GO:0017136||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_component chromatin silencing complex|GO:0005677||ISS  go_process chromatin silencing|GO:0006342||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product SRT1 (sirtuin 1); DNA binding / NAD or NADH binding / NAD-dependent histone deacetylase/ zinc ion binding  note sirtuin 1 (SRT1); FUNCTIONS IN: NAD or NADH binding, DNA binding, zinc ion binding, NAD-dependent histone deacetylase activity; INVOLVED IN: protein amino acid deacetylation, chromatin silencing, regulation of transcription, DNA-dependent; LOCATED IN: chromatin silencing complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent histone deacetylase, silent information regulator Sir2 (InterPro:IPR003000); BEST Arabidopsis thaliana protein match is: SRT2 (SIRTUIN 2); DNA binding / NAD or NADH binding / NAD-dependent histone deacetylase/ zinc ion binding (TAIR:AT5G09230.7); Has 4025 Blast hits to 4006 proteins in 1070 species: Archae - 102; Bacteria - 1913; Metazoa - 694; Fungi - 466; Plants - 49; Viruses - 0; Other Eukaryotes - 801 (source: NCBI BLink).  protein_id AT5G55760.1p  transcript_id AT5G55760.1  protein_id AT5G55760.1p  transcript_id AT5G55760.1  
At5g55770	chr5:022571645	0.0	W/22571645-22573732	AT5G55770.1  CDS  gene_syn MDF20.21, MDF20_21  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT5G55780.1); Has 1027 Blast hits to 480 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 1011; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G55770.1p  transcript_id AT5G55770.1  protein_id AT5G55770.1p  transcript_id AT5G55770.1  
At5g55780	chr5:022576611	0.0	W/22576611-22578668	AT5G55780.1  CDS  gene_syn MDF20.22, MDF20_22  go_process intracellular signaling cascade|GO:0007242||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular signaling cascade; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT3G26550.1); Has 1097 Blast hits to 489 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 5; Plants - 1075; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G55780.1p  transcript_id AT5G55780.1  protein_id AT5G55780.1p  transcript_id AT5G55780.1  
At5g55790	chr5:022580760	0.0	C/22580760-22581335	AT5G55790.1  CDS  gene_syn MDF20.23, MDF20_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G55790.1p  transcript_id AT5G55790.1  protein_id AT5G55790.1p  transcript_id AT5G55790.1  
At5g55800	chr5:022581694	0.0	W/22581694-22583430	AT5G55800.1  CDS  gene_syn MDF20.24, MDF20_24  go_process intracellular signaling cascade|GO:0007242||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular signaling cascade; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Zinc finger, RING-type (InterPro:IPR001841), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT4G10370.1); Has 1184 Blast hits to 476 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1178; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G55800.1p  transcript_id AT5G55800.1  protein_id AT5G55800.1p  transcript_id AT5G55800.1  
At5g55810	chr5:022586190	0.0	C/22586190-22586239,22585943-22586016,22585462-22585547,22585190-22585273,22585016-22585100,22584760-22584839,22584567-22584668,22584413-22584471,22584229-22584325	AT5G55810.1  CDS  gene_syn A. thaliana nicotinate/nicotinamide mononucleotide adenyltransferase, AtNMNAT, MDF20.25, MDF20_25  gene AtNMNAT  function encodes a bi-functional enzyme that expresses both nicotinamide-nucleotide adenylyltransferase (2.7.7.1) and nicotinate-nucleotide adenylyltransferase (2.7.7.18)activity.  go_component cellular_component|GO:0005575||ND  go_process biosynthetic process|GO:0009058||ISS  go_process NAD biosynthetic process|GO:0009435|17270012|IMP  go_process pollen development|GO:0009555|17270012|IMP  go_process pollen tube growth|GO:0009860|17270012|IMP  go_function nicotinamide-nucleotide adenylyltransferase activity|GO:0000309|17270012|IDA  go_function nicotinamide-nucleotide adenylyltransferase activity|GO:0000309||ISS  go_function nicotinate-nucleotide adenylyltransferase activity|GO:0004515|17270012|IDA  product AtNMNAT (A. thaliana nicotinate/nicotinamide mononucleotide adenyltransferase); nicotinamide-nucleotide adenylyltransferase/ nicotinate-nucleotide adenylyltransferase  note A. thaliana nicotinate/nicotinamide mononucleotide adenyltransferase (AtNMNAT); FUNCTIONS IN: nicotinamide-nucleotide adenylyltransferase activity, nicotinate-nucleotide adenylyltransferase activity; INVOLVED IN: pollen tube growth, biosynthetic process, pollen development, NAD biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: anther; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Probable nicotinate-nucleotide adenylyltransferase (InterPro:IPR005248), Cytidylyltransferase (InterPro:IPR004820); Has 756 Blast hits to 709 proteins in 247 species: Archae - 0; Bacteria - 254; Metazoa - 312; Fungi - 93; Plants - 26; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT5G55810.1p  transcript_id AT5G55810.1  protein_id AT5G55810.1p  transcript_id AT5G55810.1  
At5g55820	chr5:022586287	0.0	W/22586287-22586364,22586596-22586824,22587227-22589784,22589901-22590089,22590411-22590599,22591046-22592339,22592457-22592866,22592960-22593115,22593192-22593355,22593447-22593538,22593914-22594035	AT5G55820.1  CDS  gene_syn MDF20.26, MDF20_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; Has 125304 Blast hits to 61210 proteins in 1981 species: Archae - 482; Bacteria - 15262; Metazoa - 56888; Fungi - 9654; Plants - 3645; Viruses - 576; Other Eukaryotes - 38797 (source: NCBI BLink).  protein_id AT5G55820.1p  transcript_id AT5G55820.1  protein_id AT5G55820.1p  transcript_id AT5G55820.1  
At5g55830	chr5:022594655	0.0	W/22594655-22596700	AT5G55830.1  CDS  gene_syn MDF20.27, MDF20_27  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product lectin protein kinase, putative  note lectin protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin protein kinase family protein (TAIR:AT3G53380.1); Has 86647 Blast hits to 85571 proteins in 3327 species: Archae - 43; Bacteria - 7510; Metazoa - 38039; Fungi - 6749; Plants - 19550; Viruses - 407; Other Eukaryotes - 14349 (source: NCBI BLink).  protein_id AT5G55830.1p  transcript_id AT5G55830.1  protein_id AT5G55830.1p  transcript_id AT5G55830.1  
At5g55835	chr5:022597012	0.0	C/22597012-22597117	AT5G55835.1  miRNA  gene_syn MICRORNA156H, MIR156H  gene MIR156H  function Encodes a microRNA that targets several SPL family members, including SPL3,4, and 5. By regulating the expression of SPL3 (and probably also SPL4 and SPL5), this microRNA regulates vegetative phase change. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGACAGAAGAAAGAGAGCAC  product MIR156H (MICRORNA156H); miRNA  transcript_id AT5G55835.1  
At5g55840	chr5:022598398	0.0	W/22598398-22601671,22601862-22601957,22602045-22602499	AT5G55840.1  CDS  gene_syn MWJ3.2, MWJ3_2  go_component cellular_component|GO:0005575||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G62910.1); Has 36356 Blast hits to 6044 proteins in 186 species: Archae - 4; Bacteria - 16; Metazoa - 1152; Fungi - 851; Plants - 32356; Viruses - 0; Other Eukaryotes - 1977 (source: NCBI BLink).  protein_id AT5G55840.1p  transcript_id AT5G55840.1  protein_id AT5G55840.1p  transcript_id AT5G55840.1  
At5g55850	chr5:022603617	0.0	W/22603617-22603622,22603707-22603754,22604543-22604735,22604806-22604951	AT5G55850.2  CDS  gene_syn MWJ3.3, MWJ3_3, NOI, NOI PROTEIN  gene NOI  function NOI protein  go_process response to nitrate|GO:0010167||ISS  go_function molecular_function|GO:0003674||ND  product NOI  note NOI; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to nitrate; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Defence response, Rin4 (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04410.1).  protein_id AT5G55850.2p  transcript_id AT5G55850.2  protein_id AT5G55850.2p  transcript_id AT5G55850.2  
At5g55850	chr5:022603617	0.0	W/22603617-22603622,22604543-22604735,22604806-22604951	AT5G55850.1  CDS  gene_syn MWJ3.3, MWJ3_3, NOI, NOI PROTEIN  gene NOI  function NOI protein  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to nitrate|GO:0010167||ISS  go_function molecular_function|GO:0003674||ND  product NOI  note NOI; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to nitrate; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Defence response, Rin4 (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04410.1); Has 145 Blast hits to 144 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G55850.1p  transcript_id AT5G55850.1  protein_id AT5G55850.1p  transcript_id AT5G55850.1  
At5g55855	chr5:022606254	0.0	W/22606254-22606352,22606411-22606491	AT5G55855.1  CDS  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55856.1); Has 174 Blast hits to 174 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 24; Fungi - 59; Plants - 70; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT5G55855.1p  transcript_id AT5G55855.1  protein_id AT5G55855.1p  transcript_id AT5G55855.1  
At5g55856	chr5:022607927	0.0	W/22607927-22607992,22608342-22608491,22608563-22608640	AT5G55856.1  CDS  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1); protein binding / protein tag (TAIR:AT4G26840.1); Has 781 Blast hits to 780 proteins in 173 species: Archae - 0; Bacteria - 0; Metazoa - 477; Fungi - 93; Plants - 124; Viruses - 1; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT5G55856.1p  transcript_id AT5G55856.1  protein_id AT5G55856.1p  transcript_id AT5G55856.1  
At5g55860	chr5:022610146	0.0	W/22610146-22610322,22610394-22612166	AT5G55860.1  CDS  gene_syn MWJ3.4, MWJ3_4  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12150.1); Has 111017 Blast hits to 58526 proteins in 2216 species: Archae - 1543; Bacteria - 21717; Metazoa - 49183; Fungi - 8309; Plants - 4552; Viruses - 493; Other Eukaryotes - 25220 (source: NCBI BLink).  protein_id AT5G55860.1p  transcript_id AT5G55860.1  protein_id AT5G55860.1p  transcript_id AT5G55860.1  
At5g55870	chr5:022612637	0.0	C/22612637-22613311	AT5G55870.1  CDS  gene_syn MWJ3.5, MWJ3_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54330.1); Has 61 Blast hits to 61 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G55870.1p  transcript_id AT5G55870.1  protein_id AT5G55870.1p  transcript_id AT5G55870.1  
At5g55875	chr5:022613519	0.0	C/22613519-22617994	AT5G55875.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 5.4e-191 P-value blast match to GB:AAB82754 retrofit (TY1_Copia-element) (Oryza longistaminata)  
At5g55880	chr5:022619104	0.0	C/22619104-22620204	AT5G55880.1  CDS  gene_syn MWJ3.7, MWJ3_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55890.1); Has 124 Blast hits to 121 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G55880.1p  transcript_id AT5G55880.1  protein_id AT5G55880.1p  transcript_id AT5G55880.1  
At5g55890	chr5:022622737	0.0	C/22622737-22623837	AT5G55890.1  CDS  gene_syn MWJ3.8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55880.1); Has 124 Blast hits to 121 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G55890.1p  transcript_id AT5G55890.1  protein_id AT5G55890.1p  transcript_id AT5G55890.1  
At5g55893	chr5:022625630	0.0	C/22625630-22625892,22625424-22625543,22625093-22625362,22624906-22624987,22624738-22624803	AT5G55893.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G55893.1p  transcript_id AT5G55893.1  protein_id AT5G55893.1p  transcript_id AT5G55893.1  
At5g55896	chr5:022628017	0.0	C/22628017-22633342	AT5G55896.1  mRNA_TE_gene  pseudo  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.7e-49 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At5g55900	chr5:022637612	0.0	W/22637612-22637953,22638442-22638527,22638604-22638909,22639011-22639094,22639179-22639602	AT5G55900.1  CDS  gene_syn MYN21.1, MYN21_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product sucrase-related  note sucrase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Sucraseferredoxin-like (InterPro:IPR009737), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: sucrase-related (TAIR:AT4G26620.1); Has 265 Blast hits to 265 proteins in 88 species: Archae - 6; Bacteria - 27; Metazoa - 0; Fungi - 162; Plants - 40; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT5G55900.1p  transcript_id AT5G55900.1  protein_id AT5G55900.1p  transcript_id AT5G55900.1  
At5g55910	chr5:022641000	0.0	C/22641000-22641634,22640055-22640916	AT5G55910.1  CDS  gene_syn D6 PROTEIN KINASE, D6PK, MYN21.2, MYN21_2  gene D6PK  function D6PK is a protein kinase involved that plays a role in polar auxin transport. Most likely acts redundantly with the related proteins: D6PKL1,D6PKL2,and D6PKL3. PIN1 is a target of D6PK phosphorylation.  go_component basal plasma membrane|GO:0009925|19168677|IDA  go_process protein amino acid phosphorylation|GO:0006468|19168677|IDA  go_process basipetal auxin transport|GO:0010540|19168677|IGI  go_function protein kinase activity|GO:0004672|19168677|IDA  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product D6PK (D6 PROTEIN KINASE); kinase/ protein kinase  note D6 PROTEIN KINASE (D6PK); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation, basipetal auxin transport; LOCATED IN: basal plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: D6PKL1 (D6 PROTEIN KINASE LIKE 1); kinase (TAIR:AT4G26610.1); Has 83591 Blast hits to 61100 proteins in 1732 species: Archae - 15; Bacteria - 7146; Metazoa - 38688; Fungi - 8628; Plants - 10681; Viruses - 337; Other Eukaryotes - 18096 (source: NCBI BLink).  protein_id AT5G55910.1p  transcript_id AT5G55910.1  protein_id AT5G55910.1p  transcript_id AT5G55910.1  
At5g55920	chr5:022648787	0.0	C/22648787-22649383,22648634-22648697,22648385-22648518,22648206-22648289,22648049-22648123,22647874-22647945,22647712-22647785,22647518-22647570,22647302-22647411,22647031-22647099,22646871-22646945,22646681-22646773,22646514-22646593,22646329-22646428,22645896-22646215,22645742-22645790	AT5G55920.1  CDS  gene_syn OLI2, OLIGOCELLULA 2  gene OLI2  go_process rRNA processing|GO:0006364||IEA  go_function RNA binding|GO:0003723||IEA  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757||IEA  go_component nucleolus|GO:0005730||ISS  product nucleolar protein, putative  note nucleolar protein, putative; FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, RNA binding; INVOLVED IN: rRNA processing; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678), Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site (InterPro:IPR018314), Nop2p (InterPro:IPR011023); BEST Arabidopsis thaliana protein match is: nucleolar protein, putative (TAIR:AT4G26600.1); Has 57341 Blast hits to 24891 proteins in 1676 species: Archae - 352; Bacteria - 19580; Metazoa - 14938; Fungi - 5674; Plants - 1601; Viruses - 625; Other Eukaryotes - 14571 (source: NCBI BLink).  protein_id AT5G55920.1p  transcript_id AT5G55920.1  protein_id AT5G55920.1p  transcript_id AT5G55920.1  
At5g55930	chr5:022652988	0.0	W/22652988-22653054,22653184-22653641,22653928-22654025,22654102-22654674,22654756-22655827	AT5G55930.1  CDS  gene_syn ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, ATOPT1, MYN21.4, MYN21_4, OLIGOPEPTIDE TRANSPORTER 1, OPT1  gene OPT1  function oligopeptide transporter  go_component membrane|GO:0016020|11788749|ISS  go_process oligopeptide transport|GO:0006857|11788749|IGI  go_function oligopeptide transporter activity|GO:0015198|11788749|IGI  go_function oligopeptide transporter activity|GO:0015198||ISS  product OPT1 (OLIGOPEPTIDE TRANSPORTER 1); oligopeptide transporter  note OLIGOPEPTIDE TRANSPORTER 1 (OPT1); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tetrapeptide transporter, OPT1/isp4 (InterPro:IPR004648), Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: OPT5 (OLIGOPEPTIDE TRANSPORTER 5); oligopeptide transporter (TAIR:AT4G26590.1); Has 710 Blast hits to 700 proteins in 72 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 540; Plants - 157; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G55930.1p  transcript_id AT5G55930.1  protein_id AT5G55930.1p  transcript_id AT5G55930.1  
At5g55940	chr5:022657673	0.0	C/22657673-22657894,22657197-22657343,22657053-22657112,22656381-22656547,22656256-22656286	AT5G55940.1  CDS  gene_syn MYN21.5, MYN21_5, emb2731, embryo defective 2731  gene emb2731  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product emb2731 (embryo defective 2731)  note embryo defective 2731 (emb2731); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0172 (InterPro:IPR005366); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G51620.3); Has 220 Blast hits to 219 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 140; Fungi - 10; Plants - 30; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT5G55940.1p  transcript_id AT5G55940.1  protein_id AT5G55940.1p  transcript_id AT5G55940.1  
At5g55950	chr5:022660175	0.0	C/22660175-22660253,22659807-22659958,22659513-22659721,22659341-22659434,22659076-22659242,22658819-22658989,22658411-22658735	AT5G55950.1  CDS  gene_syn MYN21.6, MYN21_6  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component membrane|GO:0016020|11152613|ISS  product transporter-related  note transporter-related; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: membrane; EXPRESSED IN: leaf whorl, petal, inflorescence meristem, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: transporter-related (TAIR:AT5G57100.1); Has 1314 Blast hits to 1312 proteins in 158 species: Archae - 2; Bacteria - 4; Metazoa - 423; Fungi - 187; Plants - 539; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT5G55950.1p  transcript_id AT5G55950.1  protein_id AT5G55950.1p  transcript_id AT5G55950.1  
At5g55960	chr5:022662726	0.0	W/22662726-22664576,22664667-22664762	AT5G55960.1  CDS  gene_syn MYN21.7, MYN21_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0118 (InterPro:IPR002549); Has 676 Blast hits to 676 proteins in 335 species: Archae - 25; Bacteria - 512; Metazoa - 80; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT5G55960.1p  transcript_id AT5G55960.1  protein_id AT5G55960.1p  transcript_id AT5G55960.1  
At5g55970	chr5:022668019	0.0	W/22668019-22668530,22668612-22668984,22669166-22669312	AT5G55970.1  CDS  gene_syn MDA7.1, MDA7_1  go_component chloroplast|GO:0009507||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G26580.1); Has 6432 Blast hits to 6415 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 2215; Fungi - 447; Plants - 2666; Viruses - 18; Other Eukaryotes - 1086 (source: NCBI BLink).  protein_id AT5G55970.1p  transcript_id AT5G55970.1  protein_id AT5G55970.1p  transcript_id AT5G55970.1  
At5g55970	chr5:022668019	0.0	W/22668019-22668530,22668612-22668984,22669166-22669312	AT5G55970.2  CDS  gene_syn MDA7.1, MDA7_1  go_component chloroplast|GO:0009507||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G26580.1); Has 6432 Blast hits to 6415 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 2215; Fungi - 447; Plants - 2666; Viruses - 18; Other Eukaryotes - 1086 (source: NCBI BLink).  protein_id AT5G55970.2p  transcript_id AT5G55970.2  protein_id AT5G55970.2p  transcript_id AT5G55970.2  
At5g55980	chr5:022670301	0.0	W/22670301-22670642	AT5G55980.1  CDS  gene_syn MDA7.2, MDA7_2  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product serine-rich protein-related  note serine-rich protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage; BEST Arabidopsis thaliana protein match is: serine-rich protein-related (TAIR:AT3G13227.1); Has 67 Blast hits to 67 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G55980.1p  transcript_id AT5G55980.1  protein_id AT5G55980.1p  transcript_id AT5G55980.1  
At5g55990	chr5:022672189	0.0	W/22672189-22672312,22672449-22672531,22672630-22672689,22672786-22672894,22672970-22673022,22673117-22673197,22673275-22673387,22673522-22673579	AT5G55990.1  CDS  gene_syn ATCBL2, CALCINEURIN B-LIKE 2, CBL2, MDA7.3, MDA7_3  gene CBL2  function Encodes a member of the Arabidopsis CBL (Calcineurin B-like Calcium Sensor) protein family.  go_component vacuole|GO:0005773|14760709|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component plant-type vacuole membrane|GO:0009705|18502848|IDA  go_process calcium-mediated signaling|GO:0019722|11230129|TAS  go_function calcium ion binding|GO:0005509|11230129|ISS  go_function calcium ion binding|GO:0005509||ISS  product CBL2 (CALCINEURIN B-LIKE 2); calcium ion binding  note CALCINEURIN B-LIKE 2 (CBL2); FUNCTIONS IN: calcium ion binding; INVOLVED IN: calcium-mediated signaling; LOCATED IN: cytosolic ribosome, plant-type vacuole membrane, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), Recoverin (InterPro:IPR001125), Calcineurin B protein (InterPro:IPR015757), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: ATCBL3 (ARABIDOPSIS THALIANA CALCINEURIN B-LIKE 3); calcium ion binding (TAIR:AT4G26570.1); Has 6269 Blast hits to 6252 proteins in 711 species: Archae - 0; Bacteria - 10; Metazoa - 3259; Fungi - 958; Plants - 1267; Viruses - 0; Other Eukaryotes - 775 (source: NCBI BLink).  protein_id AT5G55990.1p  transcript_id AT5G55990.1  protein_id AT5G55990.1p  transcript_id AT5G55990.1  
At5g56000	chr5:022679945	0.0	C/22679945-22680067,22679544-22679685,22677602-22679436	AT5G56000.1  CDS  gene_syn MDA7.4, MDA7_4  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process protein folding|GO:0006457||IEA  go_function ATP binding|GO:0005524||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process protein folding|GO:0006457||ISS  go_function ATP binding|GO:0005524||ISS  product heat shock protein 81-4 (HSP81-4)  note heat shock protein 81-4 (HSP81-4); FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding; LOCATED IN: cytosol, apoplast, cell wall, nucleus, plasma membrane; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp90 (InterPro:IPR001404), ATP-binding region, ATPase-like (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: HSP81-3; ATP binding / unfolded protein binding (TAIR:AT5G56010.1); Has 10874 Blast hits to 8735 proteins in 1722 species: Archae - 35; Bacteria - 2258; Metazoa - 3737; Fungi - 425; Plants - 333; Viruses - 10; Other Eukaryotes - 4076 (source: NCBI BLink).  protein_id AT5G56000.1p  transcript_id AT5G56000.1  protein_id AT5G56000.1p  transcript_id AT5G56000.1  
At5g56010	chr5:022681410	0.0	W/22681410-22681532,22681836-22681977,22682077-22683911	AT5G56010.1  CDS  gene_syn HSP81-3, HSP81.2, MDA7.5, MDA7_5  gene HSP81-3  function a member of heat shock protein 90 (HSP90) gene family. Expressed in all tissues and abundant in root apical meristem, pollen and tapetum. Expression is NOT heat-induced but induced by IAA and NaCl.  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function ATP binding|GO:0005524||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_process protein folding|GO:0006457||ISS  go_process response to heat|GO:0009408|7697294|IEP  go_function ATP binding|GO:0005524||ISS  product HSP81-3; ATP binding / unfolded protein binding  note HSP81-3; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, response to heat; LOCATED IN: nucleolus, plasma membrane, membrane; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp90 (InterPro:IPR001404), ATP-binding region, ATPase-like (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: HSP81-2 (HEAT SHOCK PROTEIN 81-2); ATP binding (TAIR:AT5G56030.1); Has 11569 Blast hits to 9009 proteins in 1726 species: Archae - 45; Bacteria - 2262; Metazoa - 4173; Fungi - 458; Plants - 341; Viruses - 12; Other Eukaryotes - 4278 (source: NCBI BLink).  protein_id AT5G56010.1p  transcript_id AT5G56010.1  protein_id AT5G56010.1p  transcript_id AT5G56010.1  
At5g56020	chr5:022684586	0.0	W/22684586-22684803,22685148-22685406,22685515-22685619,22686096-22686206	AT5G56020.1  CDS  gene_syn MDA7.6, MDA7_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SFT2-like (InterPro:IPR011691); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26550.1); Has 436 Blast hits to 436 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 188; Fungi - 87; Plants - 61; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).  protein_id AT5G56020.1p  transcript_id AT5G56020.1  protein_id AT5G56020.1p  transcript_id AT5G56020.1  
At5g56030	chr5:022686923	0.0	W/22686923-22687045,22687351-22687492,22687599-22689433	AT5G56030.1  CDS  gene_syn EARLY-RESPONSIVE TO DEHYDRATION 8, ERD8, HEAT SHOCK PROTEIN 90.2, HEAT SHOCK PROTEIN 81-2, HSP81-2, HSP90.2, MDA7.7, MDA7_7  gene HSP81-2  function a member of heat shock protein 90 (HSP90) gene family. Expressed in all tissues and abundant in root apical meristem, pollen and tapetum. Expression is NOT heat-induced but induced by IAA and NaCl.  go_component cell wall|GO:0005618|16287169|IDA  go_component mitochondrion|GO:0005739|17137349|IDA  go_function ATP binding|GO:0005524|17137349|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process protein folding|GO:0006457||ISS  go_process defense response|GO:0006952|14592967|IMP  go_process response to heat|GO:0009408||IEP  go_process response to water deprivation|GO:0009414|19148673|IMP  go_process response to water deprivation|GO:0009414|8075396|IEP  go_process response to salt stress|GO:0009651|19148673|IMP  go_process flower development|GO:0009908|14592967|IMP  go_process heat acclimation|GO:0010286|16807682|IEP  go_process leaf development|GO:0048366|14592967|IMP  go_process protein stabilization|GO:0050821|14592967|IMP  go_function ATP binding|GO:0005524||ISS  product HSP81-2 (HEAT SHOCK PROTEIN 81-2); ATP binding  note HEAT SHOCK PROTEIN 81-2 (HSP81-2); FUNCTIONS IN: ATP binding; INVOLVED IN: in 9 processes; LOCATED IN: cytosol, mitochondrion, cell wall, nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp90 (InterPro:IPR001404), ATP-binding region, ATPase-like (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: HSP81-3; ATP binding / unfolded protein binding (TAIR:AT5G56010.1); Has 11814 Blast hits to 9109 proteins in 1729 species: Archae - 50; Bacteria - 2267; Metazoa - 4307; Fungi - 473; Plants - 361; Viruses - 12; Other Eukaryotes - 4344 (source: NCBI BLink).  protein_id AT5G56030.1p  transcript_id AT5G56030.1  protein_id AT5G56030.1p  transcript_id AT5G56030.1  
At5g56040	chr5:022695050	0.0	W/22695050-22697855,22697944-22698410	AT5G56040.2  CDS  gene_syn MDA7.8, MDA7_8  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat protein kinase, putative  note leucine-rich repeat protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: kinase (TAIR:AT4G26540.1); Has 158052 Blast hits to 89419 proteins in 3013 species: Archae - 77; Bacteria - 13640; Metazoa - 62491; Fungi - 5894; Plants - 56819; Viruses - 315; Other Eukaryotes - 18816 (source: NCBI BLink).  protein_id AT5G56040.2p  transcript_id AT5G56040.2  protein_id AT5G56040.2p  transcript_id AT5G56040.2  
At5g56040	chr5:022695050	0.0	W/22695050-22697911	AT5G56040.1  CDS  gene_syn MDA7.8, MDA7_8  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat protein kinase, putative  note leucine-rich repeat protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: kinase (TAIR:AT4G26540.1); Has 126475 Blast hits to 58369 proteins in 2367 species: Archae - 57; Bacteria - 8727; Metazoa - 47453; Fungi - 3514; Plants - 53855; Viruses - 151; Other Eukaryotes - 12718 (source: NCBI BLink).  protein_id AT5G56040.1p  transcript_id AT5G56040.1  protein_id AT5G56040.1p  transcript_id AT5G56040.1  
At5g56050	chr5:022701167	0.0	C/22701167-22702018	AT5G56050.1  CDS  gene_syn MDA7.9, MDA7_9  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26490.1); Has 322 Blast hits to 322 proteins in 28 species: Archae - 0; Bacteria - 8; Metazoa - 10; Fungi - 1; Plants - 299; Viruses - 2; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G56050.1p  transcript_id AT5G56050.1  protein_id AT5G56050.1p  transcript_id AT5G56050.1  
At5g56060	chr5:022704008	0.0	W/22704008-22704158,22704301-22704496,22704577-22704892	AT5G56060.1  CDS  gene_syn MDA7.10, MDA7_10  go_component cytoplasm|GO:0005737||IEA  go_process translation|GO:0006412||IEA  go_process phenylalanyl-tRNA aminoacylation|GO:0006432||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function phenylalanine-tRNA ligase activity|GO:0004826||IEA  go_function ATP binding|GO:0005524||IEA  product ATP binding / nucleotide binding / phenylalanine-tRNA ligase  note ATP binding / nucleotide binding / phenylalanine-tRNA ligase; FUNCTIONS IN: phenylalanine-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: phenylalanyl-tRNA aminoacylation, translation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Phenylalanyl-tRNA synthetase, class IIc, conserved region (InterPro:IPR002319); BEST Arabidopsis thaliana protein match is: ATP binding / nucleotide binding / phenylalanine-tRNA ligase (TAIR:AT5G25030.1); Has 209 Blast hits to 206 proteins in 86 species: Archae - 0; Bacteria - 12; Metazoa - 42; Fungi - 63; Plants - 69; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT5G56060.1p  transcript_id AT5G56060.1  protein_id AT5G56060.1p  transcript_id AT5G56060.1  
At5g56061	chr5:022705280	0.0	C/22705280-22705701	AT5G56061.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G56050  
At5g56070	chr5:022708679	0.0	W/22708679-22708818,22708985-22709204	AT5G56070.1  CDS  gene_syn MDA7.12, MDA7_12  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56050.1); Has 14 Blast hits to 14 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G56070.1p  transcript_id AT5G56070.1  protein_id AT5G56070.1p  transcript_id AT5G56070.1  
At5g56075	chr5:022709756	0.0	W/22709756-22710080,22710212-22710376,22710529-22710809	AT5G56075.1  CDS  go_component cytoplasm|GO:0005737||IEA  go_process translation|GO:0006412||IEA  go_process phenylalanyl-tRNA aminoacylation|GO:0006432||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function phenylalanine-tRNA ligase activity|GO:0004826||IEA  go_function ATP binding|GO:0005524||IEA  product ATP binding / nucleotide binding / phenylalanine-tRNA ligase  note ATP binding / nucleotide binding / phenylalanine-tRNA ligase; FUNCTIONS IN: phenylalanine-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: phenylalanyl-tRNA aminoacylation, translation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Phenylalanyl-tRNA synthetase, class IIc, conserved region (InterPro:IPR002319); BEST Arabidopsis thaliana protein match is: ATP binding / nucleotide binding / phenylalanine-tRNA ligase (TAIR:AT5G25030.1); Has 174 Blast hits to 171 proteins in 64 species: Archae - 0; Bacteria - 2; Metazoa - 36; Fungi - 51; Plants - 69; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT5G56075.1p  transcript_id AT5G56075.1  protein_id AT5G56075.1p  transcript_id AT5G56075.1  
At5g56080	chr5:022711402	0.0	C/22711402-22712364	AT5G56080.1  CDS  gene_syn ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 2, ATNAS2, MDA7.14, MDA7_14, NAS2, NICOTIANAMINE SYNTHASE 2  gene NAS2  function Encodes a protein with nicotianamine synthase activity. Its transcript levels rise in roots in response to zinc deficiency and rise in leaves in response to elevated levels of zinc.  go_process response to zinc ion|GO:0010043|14690510|IEP  go_process nicotianamine biosynthetic process|GO:0030418||IDA  go_function nicotianamine synthase activity|GO:0030410||IDA  product NAS2 (NICOTIANAMINE SYNTHASE 2); nicotianamine synthase  note NICOTIANAMINE SYNTHASE 2 (NAS2); FUNCTIONS IN: nicotianamine synthase activity; INVOLVED IN: response to zinc ion, nicotianamine biosynthetic process; EXPRESSED IN: root, leaf; CONTAINS InterPro DOMAIN/s: Nicotianamine synthase (InterPro:IPR004298); BEST Arabidopsis thaliana protein match is: NAS1 (NICOTIANAMINE SYNTHASE 1); nicotianamine synthase (TAIR:AT5G04950.1); Has 135 Blast hits to 133 proteins in 32 species: Archae - 14; Bacteria - 4; Metazoa - 0; Fungi - 17; Plants - 99; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G56080.1p  transcript_id AT5G56080.1  protein_id AT5G56080.1p  transcript_id AT5G56080.1  
At5g56090	chr5:022714634	0.0	W/22714634-22714816,22714961-22715259,22715375-22715600,22715693-22715938,22716032-22716142,22716218-22716349,22716429-22716605	AT5G56090.1  CDS  gene_syn COX15, MDA7.15, MDA7_15, cytochrome c oxidase 15  gene COX15  function Encodes a homolog of COX15. Microarray analysis show a 3.2 fold increase in transcription after treatment with rotenone, an electron transport chain inhibitor.  go_component membrane|GO:0016020||IEA  go_process protein complex assembly|GO:0006461||IEA  go_component membrane|GO:0016020||ISS  go_process protein complex assembly|GO:0006461||ISS  go_function molecular_function|GO:0003674||ND  product COX15 (cytochrome c oxidase 15)  note cytochrome c oxidase 15 (COX15); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein complex assembly; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome oxidase assembly (InterPro:IPR003780); Has 2668 Blast hits to 2666 proteins in 515 species: Archae - 0; Bacteria - 770; Metazoa - 104; Fungi - 85; Plants - 21; Viruses - 0; Other Eukaryotes - 1688 (source: NCBI BLink).  protein_id AT5G56090.1p  transcript_id AT5G56090.1  protein_id AT5G56090.1p  transcript_id AT5G56090.1  
At5g56100	chr5:022717121	0.0	W/22717121-22717573	AT5G56100.1  CDS  gene_syn MDA7.16, MDA7_16  go_component monolayer-surrounded lipid storage body|GO:0012511||IEA  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  go_process lipid storage|GO:0019915||ISS  go_function molecular_function|GO:0003674||ND  product glycine-rich protein / oleosin  note glycine-rich protein / oleosin; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lipid storage; LOCATED IN: monolayer-surrounded lipid storage body, integral to membrane, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136); Has 28 Blast hits to 28 proteins in 7 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G56100.1p  transcript_id AT5G56100.1  protein_id AT5G56100.1p  transcript_id AT5G56100.1  
At5g56110	chr5:022719191	0.0	W/22719191-22719323,22719422-22719551,22719965-22720664	AT5G56110.1  CDS  gene_syn ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 103, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 80, ATMYB103, ATMYB80, MALE STERILE 188, MDA7.17, MDA7_17, MS188, MYB103, TRANSCRIPTION FACTOR MYB103  gene ATMYB103  function Encodes a member of the R2R3 MYB transcription factor gene family that is required for anther development by regulation tapetum development, callose dissolution and exine formation. It acts upstream of MS2.  go_component nucleus|GO:0005634|17727613|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|10353220|TAS  go_process trichome morphogenesis|GO:0010090|12848824|IMP  go_process trichome morphogenesis|GO:0010090|17727613|IMP  go_process tapetal layer development|GO:0048658|17727613|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ATMYB103 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 103); DNA binding / transcription factor  note ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 103 (ATMYB103); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: tapetal layer development, regulation of transcription, DNA-dependent, trichome morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: leaf whorl, tapetum, flower, trichome; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: TDF1 (DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1); DNA binding / transcription factor (TAIR:AT3G28470.1); Has 6202 Blast hits to 5798 proteins in 350 species: Archae - 0; Bacteria - 0; Metazoa - 606; Fungi - 280; Plants - 3802; Viruses - 3; Other Eukaryotes - 1511 (source: NCBI BLink).  protein_id AT5G56110.1p  transcript_id AT5G56110.1  protein_id AT5G56110.1p  transcript_id AT5G56110.1  
At5g56120	chr5:022721483	0.0	W/22721483-22722193	AT5G56120.1  CDS  gene_syn MDA7.18, MDA7_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12870.1); Has 51 Blast hits to 51 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G56120.1p  transcript_id AT5G56120.1  protein_id AT5G56120.1p  transcript_id AT5G56120.1  
At5g56130	chr5:022725000	0.0	C/22725000-22725065,22724808-22724903,22724504-22724633,22724100-22724191,22723921-22723989,22723678-22723735,22723462-22723561,22723283-22723369,22723120-22723198,22722889-22723024,22722755-22722789	AT5G56130.1  CDS  gene_syn MDA7.19, MDA7_19  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: HOS15 (high expression of osmotically responsive genes 15) (TAIR:AT5G67320.1); Has 39801 Blast hits to 20795 proteins in 547 species: Archae - 54; Bacteria - 5003; Metazoa - 18429; Fungi - 7672; Plants - 3597; Viruses - 0; Other Eukaryotes - 5046 (source: NCBI BLink).  protein_id AT5G56130.1p  transcript_id AT5G56130.1  protein_id AT5G56130.1p  transcript_id AT5G56130.1  
At5g56140	chr5:022725462	0.0	W/22725462-22725652,22726167-22726252,22726610-22726755,22727168-22727281,22727358-22727474,22727557-22727700,22727783-22727932	AT5G56140.1  CDS  gene_syn MDA7.20, MDA7_20  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product KH domain-containing protein  note KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT4G26480.1); Has 4346 Blast hits to 2291 proteins in 261 species: Archae - 6; Bacteria - 444; Metazoa - 2561; Fungi - 214; Plants - 674; Viruses - 13; Other Eukaryotes - 434 (source: NCBI BLink).  protein_id AT5G56140.1p  transcript_id AT5G56140.1  protein_id AT5G56140.1p  transcript_id AT5G56140.1  
At5g56150	chr5:022729756	0.0	W/22729756-22729825,22729997-22730124,22730264-22730368,22730821-22730964	AT5G56150.1  CDS  gene_syn MDA7.21, MDA7_21, UBC30, ubiquitin-conjugating enzyme 30  gene UBC30  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC30 (ubiquitin-conjugating enzyme 30); ubiquitin-protein ligase  note ubiquitin-conjugating enzyme 30 (UBC30); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme, putative (TAIR:AT1G64230.2); Has 7741 Blast hits to 7729 proteins in 310 species: Archae - 0; Bacteria - 0; Metazoa - 3692; Fungi - 1520; Plants - 1138; Viruses - 22; Other Eukaryotes - 1369 (source: NCBI BLink).  protein_id AT5G56150.1p  transcript_id AT5G56150.1  protein_id AT5G56150.1p  transcript_id AT5G56150.1  
At5g56150	chr5:022729756	0.0	W/22729756-22729825,22729997-22730124,22730264-22730368,22730821-22730964	AT5G56150.2  CDS  gene_syn MDA7.21, MDA7_21, UBC30, ubiquitin-conjugating enzyme 30  gene UBC30  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC30 (ubiquitin-conjugating enzyme 30); ubiquitin-protein ligase  note ubiquitin-conjugating enzyme 30 (UBC30); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme, putative (TAIR:AT1G64230.2); Has 7741 Blast hits to 7729 proteins in 310 species: Archae - 0; Bacteria - 0; Metazoa - 3692; Fungi - 1520; Plants - 1138; Viruses - 22; Other Eukaryotes - 1369 (source: NCBI BLink).  protein_id AT5G56150.2p  transcript_id AT5G56150.2  protein_id AT5G56150.2p  transcript_id AT5G56150.2  
At5g56160	chr5:022732444	0.0	W/22732444-22732450,22732538-22732820,22732904-22733003,22733088-22733354,22733435-22733512,22733666-22733770,22733855-22733904,22734020-22734119,22734201-22734299,22734374-22734472,22734545-22734662,22734767-22735104,22735195-22735260,22735357-22735380	AT5G56160.1  CDS  gene_syn MDA7.22, MDA7_22  go_component cellular_component|GO:0005575||ND  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product transporter  note transporter; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT1G55690.2); Has 1407 Blast hits to 1405 proteins in 173 species: Archae - 3; Bacteria - 0; Metazoa - 460; Fungi - 292; Plants - 404; Viruses - 0; Other Eukaryotes - 248 (source: NCBI BLink).  protein_id AT5G56160.1p  transcript_id AT5G56160.1  protein_id AT5G56160.1p  transcript_id AT5G56160.1  
At5g56170	chr5:022736072	0.0	W/22736072-22736153,22736249-22736308,22736744-22737108	AT5G56170.1  CDS  gene_syn MDA7.23, MDA7_23  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: LRE (LORELEI) (TAIR:AT4G26466.1); Has 71 Blast hits to 71 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G56170.1p  transcript_id AT5G56170.1  protein_id AT5G56170.1p  transcript_id AT5G56170.1  
At5g56180	chr5:022740655	0.0	C/22740655-22740986,22740440-22740525,22740256-22740326,22740074-22740141,22739913-22739974,22739731-22739828,22739326-22739407,22738945-22739087,22738507-22738655,22738129-22738262,22737902-22738020,22737539-22737610	AT5G56180.1  CDS  gene_syn ACTIN-RELATED PROTEIN 8, ARP8, AT5G56185, ATARP8, MDA7.26  gene ATARP8  function encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. Member of nuclear ARP family of genes.  go_component nucleus|GO:0005634|11891255|TAS  go_process actin filament-based process|GO:0030029|11891255|TAS  go_function structural constituent of cytoskeleton|GO:0005200|11891255|ISS  go_function structural constituent of cytoskeleton|GO:0005200||ISS  product ATARP8 (ACTIN-RELATED PROTEIN 8); structural constituent of cytoskeleton  note ACTIN-RELATED PROTEIN 8 (ATARP8); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: actin filament-based process; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: ACT11 (actin-11); structural constituent of cytoskeleton (TAIR:AT3G12110.1); Has 8032 Blast hits to 8023 proteins in 1950 species: Archae - 0; Bacteria - 4; Metazoa - 4029; Fungi - 1472; Plants - 889; Viruses - 0; Other Eukaryotes - 1638 (source: NCBI BLink).  protein_id AT5G56180.1p  transcript_id AT5G56180.1  protein_id AT5G56180.1p  transcript_id AT5G56180.1  
At5g56180	chr5:022740655	0.0	C/22740655-22740986,22740440-22740525,22740256-22740326,22740074-22740141,22739913-22739974,22739731-22739828,22739326-22739407,22738945-22739087,22738507-22738655,22738330-22738402	AT5G56180.2  CDS  gene_syn ACTIN-RELATED PROTEIN 8, ARP8, AT5G56185, ATARP8, MDA7.26  gene ATARP8  function encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. Member of nuclear ARP family of genes.  go_component nucleus|GO:0005634|11891255|TAS  go_process actin filament-based process|GO:0030029|11891255|TAS  go_function structural constituent of cytoskeleton|GO:0005200|11891255|ISS  go_function structural constituent of cytoskeleton|GO:0005200||ISS  product ATARP8 (ACTIN-RELATED PROTEIN 8); structural constituent of cytoskeleton  note ACTIN-RELATED PROTEIN 8 (ATARP8); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: actin filament-based process; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: ACT9 (ACTIN 9); ATP binding / protein binding / structural constituent of cytoskeleton (TAIR:AT2G42090.1); Has 7155 Blast hits to 7150 proteins in 1887 species: Archae - 0; Bacteria - 2; Metazoa - 3562; Fungi - 1342; Plants - 745; Viruses - 0; Other Eukaryotes - 1504 (source: NCBI BLink).  protein_id AT5G56180.2p  transcript_id AT5G56180.2  protein_id AT5G56180.2p  transcript_id AT5G56180.2  
At5g56190	chr5:022742563	0.0	W/22742563-22742575,22742685-22742800,22742896-22743060,22743153-22743239,22743440-22743574,22743677-22743787,22743946-22744037,22744133-22744238,22744327-22744413,22744496-22744909	AT5G56190.1  CDS  gene_syn MDA7.25, MDA7_25  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  product WD-40 repeat family protein  note WD-40 repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein (TAIR:AT3G13340.1); Has 16403 Blast hits to 7902 proteins in 405 species: Archae - 74; Bacteria - 4774; Metazoa - 4792; Fungi - 3149; Plants - 1012; Viruses - 0; Other Eukaryotes - 2602 (source: NCBI BLink).  protein_id AT5G56190.1p  transcript_id AT5G56190.1  protein_id AT5G56190.1p  transcript_id AT5G56190.1  
At5g56190	chr5:022742654	0.0	W/22742654-22742800,22742896-22743060,22743153-22743239,22743440-22743574,22743677-22743787,22743946-22744037,22744133-22744238,22744327-22744413,22744496-22744909	AT5G56190.2  CDS  gene_syn MDA7.25, MDA7_25  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  product WD-40 repeat family protein  note WD-40 repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein (TAIR:AT3G13340.1); Has 16405 Blast hits to 7904 proteins in 405 species: Archae - 74; Bacteria - 4774; Metazoa - 4792; Fungi - 3149; Plants - 1012; Viruses - 0; Other Eukaryotes - 2604 (source: NCBI BLink).  protein_id AT5G56190.2p  transcript_id AT5G56190.2  protein_id AT5G56190.2p  transcript_id AT5G56190.2  
At5g56200	chr5:022747768	0.0	W/22747768-22749249	AT5G56200.1  CDS  gene_syn K24C1.1, K24C1_1  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: ZAT6 (ZINC FINGER OF ARABIDOPSIS THALIANA 6); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT5G04340.1); Has 5378 Blast hits to 3017 proteins in 212 species: Archae - 0; Bacteria - 395; Metazoa - 2916; Fungi - 407; Plants - 829; Viruses - 28; Other Eukaryotes - 803 (source: NCBI BLink).  protein_id AT5G56200.1p  transcript_id AT5G56200.1  protein_id AT5G56200.1p  transcript_id AT5G56200.1  
At5g56210	chr5:022751493	0.0	C/22751493-22752363,22750660-22751318	AT5G56210.1  CDS  gene_syn K24C1.2, K24C1_2, WIP2, WPP-domain Interacting Protein 2  gene WIP2  go_component nuclear envelope|GO:0005635|17600715|IDA  go_component cell plate|GO:0009504|17600715|IDA  go_process biological_process|GO:0008150||ND  go_function protein homodimerization activity|GO:0042803|17600715|IPI  go_function protein heterodimerization activity|GO:0046982|17600715|IPI  product WIP2 (WPP-domain Interacting Protein 2); protein heterodimerization/ protein homodimerization  note WPP-domain Interacting Protein 2 (WIP2); FUNCTIONS IN: protein heterodimerization activity, protein homodimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: nuclear envelope, cell plate; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: WIP1 (WPP-DOMAIN INTERACTING PROTEIN 1); protein heterodimerization/ protein homodimerization (TAIR:AT4G26455.1); Has 2090 Blast hits to 1631 proteins in 257 species: Archae - 16; Bacteria - 128; Metazoa - 915; Fungi - 176; Plants - 118; Viruses - 11; Other Eukaryotes - 726 (source: NCBI BLink).  protein_id AT5G56210.1p  transcript_id AT5G56210.1  protein_id AT5G56210.1p  transcript_id AT5G56210.1  
At5g56220	chr5:022754871	0.0	W/22754871-22757792	AT5G56220.1  CDS  gene_syn K24C1.3, K24C1_3  go_component chloroplast|GO:0009507||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  product nucleoside-triphosphatase/ nucleotide binding  note nucleoside-triphosphatase/ nucleotide binding; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: nucleoside-triphosphatase/ nucleotide binding / transmembrane receptor (TAIR:AT4G23440.1); Has 3608 Blast hits to 745 proteins in 167 species: Archae - 2; Bacteria - 174; Metazoa - 217; Fungi - 153; Plants - 222; Viruses - 14; Other Eukaryotes - 2826 (source: NCBI BLink).  protein_id AT5G56220.1p  transcript_id AT5G56220.1  protein_id AT5G56220.1p  transcript_id AT5G56220.1  
At5g56230	chr5:022758768	0.0	C/22758768-22759328	AT5G56230.1  CDS  gene_syn K24C1.4, K24C1_4, PRA1.G2, PRENYLATED RAB ACCEPTOR 1.G2  gene PRA1.G2  go_component endoplasmic reticulum|GO:0005783|18583532|IDA  go_process vesicle-mediated transport|GO:0016192|18583532|IDA  go_function molecular_function|GO:0003674||ND  product PRA1.G2 (PRENYLATED RAB ACCEPTOR 1.G2)  note PRENYLATED RAB ACCEPTOR 1.G2 (PRA1.G2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: PRA1.G1 (PRENYLATED RAB ACCEPTOR 1.G1) (TAIR:AT1G55640.1); Has 216 Blast hits to 216 proteins in 41 species: Archae - 0; Bacteria - 1; Metazoa - 39; Fungi - 0; Plants - 168; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G56230.1p  transcript_id AT5G56230.1  protein_id AT5G56230.1p  transcript_id AT5G56230.1  
At5g56240	chr5:022763415	0.0	C/22763415-22763539,22762009-22763020,22760088-22761911	AT5G56240.1  CDS  gene_syn K24C1.5, K24C1_5  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: HAP8 (HAPLESS 8) (TAIR:AT5G56250.2); Has 259 Blast hits to 240 proteins in 69 species: Archae - 0; Bacteria - 13; Metazoa - 67; Fungi - 34; Plants - 31; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).  protein_id AT5G56240.1p  transcript_id AT5G56240.1  protein_id AT5G56240.1p  transcript_id AT5G56240.1  
At5g56250	chr5:022771742	0.0	C/22771742-22771869,22770333-22771305,22768918-22770252	AT5G56250.1  CDS  gene_syn HAP8, HAPLESS 8, K24C1.6, K24C1_6  gene HAP8  go_component chloroplast|GO:0009507||IEA  product HAP8 (HAPLESS 8)  note HAPLESS 8 (HAP8); LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56240.1); Has 106 Blast hits to 70 proteins in 34 species: Archae - 0; Bacteria - 6; Metazoa - 49; Fungi - 11; Plants - 23; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT5G56250.1p  transcript_id AT5G56250.1  protein_id AT5G56250.1p  transcript_id AT5G56250.1  
At5g56250	chr5:022771742	0.0	C/22771742-22771869,22770333-22771305,22768918-22770252	AT5G56250.2  CDS  gene_syn HAP8, HAPLESS 8, K24C1.6, K24C1_6  gene HAP8  go_component chloroplast|GO:0009507||IEA  product HAP8 (HAPLESS 8)  note HAPLESS 8 (HAP8); LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56240.1); Has 106 Blast hits to 70 proteins in 34 species: Archae - 0; Bacteria - 6; Metazoa - 49; Fungi - 11; Plants - 23; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT5G56250.2p  transcript_id AT5G56250.2  protein_id AT5G56250.2p  transcript_id AT5G56250.2  
At5g56260	chr5:022775549	0.0	C/22775549-22776049	AT5G56260.1  CDS  gene_syn K24C1.7, K24C1_7  go_process regulation of RNA metabolic process|GO:0051252||IEA  go_function ribonuclease inhibitor activity|GO:0008428||IEA  go_component cellular_component|GO:0005575||ND  product dimethylmenaquinone methyltransferase family protein  note dimethylmenaquinone methyltransferase family protein; FUNCTIONS IN: ribonuclease inhibitor activity; INVOLVED IN: regulation of RNA metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (InterPro:IPR005493), Ribonuclease E inhibitor RraA (InterPro:IPR010203); BEST Arabidopsis thaliana protein match is: dimethylmenaquinone methyltransferase family protein (TAIR:AT5G16450.2); Has 2364 Blast hits to 2364 proteins in 653 species: Archae - 48; Bacteria - 1656; Metazoa - 2; Fungi - 23; Plants - 58; Viruses - 0; Other Eukaryotes - 577 (source: NCBI BLink).  protein_id AT5G56260.1p  transcript_id AT5G56260.1  protein_id AT5G56260.1p  transcript_id AT5G56260.1  
At5g56270	chr5:022780816	0.0	W/22780816-22781220,22781298-22782253,22782329-22782487,22782594-22783137	AT5G56270.1  CDS  gene_syn AtWRKY2, MXK23.1, MXK23_1, WRKY2  gene WRKY2  function WRKY transcription factor 2  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY2; transcription factor  note WRKY2; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY34 (WRKY DNA-BINDING PROTEIN 34); transcription factor (TAIR:AT4G26440.1); Has 3598 Blast hits to 1941 proteins in 143 species: Archae - 2; Bacteria - 16; Metazoa - 95; Fungi - 13; Plants - 3367; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT5G56270.1p  transcript_id AT5G56270.1  protein_id AT5G56270.1p  transcript_id AT5G56270.1  
At5g56280	chr5:022785233	0.0	C/22785233-22785530,22785055-22785143,22784875-22784968,22784614-22784675,22784416-22784494,22784242-22784334,22784008-22784108,22783860-22783915,22783617-22783698	AT5G56280.1  CDS  gene_syn CSN6A, MXK23.2, MXK23_2  gene CSN6A  function one of two genes encoding subunit 6 of COP9 signalosome complex. Protein contains a MPR1p and PAD1p N-terminal (MPN) domain at the N-terminal region and belongs to the Mov34 superfamily. Mutant and antisense expression result in a number of developmental defects and in ubiquitin/proteasome-mediated protein degradation.  go_component nucleus|GO:0005634|10782111|TAS  go_component signalosome|GO:0008180|11019806|TAS  go_component signalosome|GO:0008180|9707402|IPI  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11701877|IMP  go_process multicellular organismal development|GO:0007275|11701877|IMP  go_process photomorphogenesis|GO:0009640|11019806|TAS  go_process signalosome assembly|GO:0010387|17307927|IMP  go_process protein catabolic process|GO:0030163|10782111|TAS  product CSN6A  note CSN6A; INVOLVED IN: multicellular organismal development, signalosome assembly, protein catabolic process, photomorphogenesis, ubiquitin-dependent protein catabolic process; LOCATED IN: signalosome, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: CSN6B (TAIR:AT4G26430.1); Has 730 Blast hits to 728 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 338; Fungi - 170; Plants - 127; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT5G56280.1p  transcript_id AT5G56280.1  protein_id AT5G56280.1p  transcript_id AT5G56280.1  
At5g56290	chr5:022786655	0.0	W/22786655-22786774,22787060-22787188,22787285-22787417,22787768-22787961,22788424-22788675,22789013-22789132,22789435-22789596,22789952-22790133,22790504-22790738,22790836-22790920,22791037-22791146,22791234-22791458,22791538-22791603,22791697-22791791,22791894-22791972	AT5G56290.1  CDS  gene_syn MXK23.3, MXK23_3, PEROXIN 5, PEX5  gene PEX5  function Encodes the peroxisomal targeting signal type 1 receptor that facilitates peroxisomal protein translocation. It recognizes proteins with the PTS1 consensus sequence (tripeptide SKL or a conserved variant) at the extreme C terminus. The protein has several domains, including C-terminal tetratricopeptide repeat motifs which act in binding the C-terminal SKL targeting signal. The mechanism of transport has been worked out in other organisms: The receptor recognizes and binds cytosolic PTS1-containing proteins. The PEX5-PTS1 complex binds a PEX14/PEX13 receptor complex at the peroxisome membrane and is translocated into the peroxisome matrix in a process dependent on PEX2,PEX10, and PEX12. In the peroxisome matrix, PEX5 releases its cargo and is recycled to the cytosol in a process dependent on PEX1, PEX4, PEX6 and PEX22. It is also involved, in conjunction with PEX7, in PTS1- and PTS2-dependent peroxisomal protein import. RNAi experiments suggest that PEX5 is necessary for the maintenance of both glyoxysomal and leaf peroxisomal functions.  go_process protein targeting to peroxisome|GO:0006625|15548601|IGI  go_process protein targeting to peroxisome|GO:0006625||ISS  go_process response to auxin stimulus|GO:0009733|11063705|IMP  go_function peroxisome matrix targeting signal-1 binding|GO:0005052||ISS  go_function protein binding|GO:0005515|11978862|IPI  go_function protein binding|GO:0005515|16256065|IPI  product PEX5 (PEROXIN 5); peroxisome matrix targeting signal-1 binding / protein binding  note PEROXIN 5 (PEX5); FUNCTIONS IN: protein binding, peroxisome matrix targeting signal-1 binding; INVOLVED IN: response to auxin stimulus, protein targeting to peroxisome; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: SPY (SPINDLY); protein N-acetylglucosaminyltransferase/ protein binding / transferase, transferring glycosyl groups (TAIR:AT3G11540.1); Has 20733 Blast hits to 10086 proteins in 906 species: Archae - 1023; Bacteria - 8481; Metazoa - 2740; Fungi - 735; Plants - 443; Viruses - 0; Other Eukaryotes - 7311 (source: NCBI BLink).  protein_id AT5G56290.1p  transcript_id AT5G56290.1  protein_id AT5G56290.1p  transcript_id AT5G56290.1  
At5g56300	chr5:022799571	0.0	W/22799571-22800083,22800509-22800796,22801122-22801484	AT5G56300.1  CDS  gene_syn GAMT2, GIBBERELLIC ACID METHYLTRANSFERASE 2, MCD7.2, MCD7_2  gene GAMT2  function A member of the Arabidopsis SABATH methyltransferase gene family. Encodes GAMT2, a methyltransferase that uses S-adenosine-L-methionine (SAM) as a methyl donor to methylate the carboxyl group of GAs, resulting in the methyl esters of GAs (MeGAs). Expressed most highly in the siliques during seed development.  go_component cellular_component|GO:0005575||ND  go_process seed germination|GO:0009845|17220201|IEP  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757|17220201|IDA  go_function gibberellin carboxyl-O-methyltransferase activity|GO:0010341|17220201|IDA  product GAMT2 (GIBBERELLIC ACID METHYLTRANSFERASE 2); S-adenosylmethionine-dependent methyltransferase/ gibberellin carboxyl-O-methyltransferase  note GIBBERELLIC ACID METHYLTRANSFERASE 2 (GAMT2); FUNCTIONS IN: gibberellin carboxyl-O-methyltransferase activity, S-adenosylmethionine-dependent methyltransferase activity; INVOLVED IN: seed germination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: GAMT1; S-adenosylmethionine-dependent methyltransferase/ gibberellin carboxyl-O-methyltransferase (TAIR:AT4G26420.1); Has 628 Blast hits to 619 proteins in 99 species: Archae - 0; Bacteria - 52; Metazoa - 14; Fungi - 3; Plants - 443; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT5G56300.1p  transcript_id AT5G56300.1  protein_id AT5G56300.1p  transcript_id AT5G56300.1  
At5g56310	chr5:022802322	0.0	W/22802322-22803914	AT5G56310.1  CDS  gene_syn MCD7.3, MCD7_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G20540.1); Has 14236 Blast hits to 5268 proteins in 171 species: Archae - 0; Bacteria - 4; Metazoa - 124; Fungi - 104; Plants - 13680; Viruses - 0; Other Eukaryotes - 324 (source: NCBI BLink).  protein_id AT5G56310.1p  transcript_id AT5G56310.1  protein_id AT5G56310.1p  transcript_id AT5G56310.1  
At5g56320	chr5:022808854	0.0	W/22808854-22808992,22809199-22809511,22809591-22809906	AT5G56320.1  CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN A14, ATEXP14, ATEXPA14, ATHEXP ALPHA 1.5, EXP14, EXPANSIN 14, MCD7.4, MCD7_4  gene ATEXPA14  function member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828||ISS  go_process plant-type cell wall modification during multidimensional cell growth|GO:0009831||ISS  product ATEXPA14 (ARABIDOPSIS THALIANA EXPANSIN A14)  note ARABIDOPSIS THALIANA EXPANSIN A14 (ATEXPA14); INVOLVED IN: plant-type cell wall modification during multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root, stamen; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15) (TAIR:AT2G03090.1); Has 1468 Blast hits to 1467 proteins in 129 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 33; Plants - 1399; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT5G56320.1p  transcript_id AT5G56320.1  protein_id AT5G56320.1p  transcript_id AT5G56320.1  
At5g56325	chr5:022812213	0.0	W/22812213-22812587,22812693-22812830,22812912-22813193	AT5G56325.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G56390.1); Has 375 Blast hits to 366 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 375; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G56325.1p  transcript_id AT5G56325.1  protein_id AT5G56325.1p  transcript_id AT5G56325.1  
At5g56330	chr5:022813768	0.0	W/22813768-22814170,22814383-22814600,22814714-22814826,22815277-22815379,22815460-22815510,22815775-22815828,22816052-22816162	AT5G56330.1  CDS  gene_syn A. THALIANA ALPHA CARBONIC ANHYDRASE 8, ACA8, ALPHA CARBONIC ANHYDRASE 8, ATACA8, MCD7.6, MCD7_6  gene ACA8  go_process one-carbon compound metabolic process|GO:0006730||IEA  go_process cyanate metabolic process|GO:0009439||IEA  go_function carbonate dehydratase activity|GO:0004089||IEA  go_function zinc ion binding|GO:0008270||IEA  product ACA8 (ALPHA CARBONIC ANHYDRASE 8); carbonate dehydratase/ zinc ion binding  note ALPHA CARBONIC ANHYDRASE 8 (ACA8); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: one-carbon compound metabolic process, cyanate metabolic process; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, alpha-class, catalytic domain (InterPro:IPR001148), Carbonic anhydrase, CAH1-like (InterPro:IPR018340); BEST Arabidopsis thaliana protein match is: ACA5 (ALPHA CARBONIC ANHYDRASE 5); carbonate dehydratase/ zinc ion binding (TAIR:AT1G08065.1); Has 197702 Blast hits to 60905 proteins in 2172 species: Archae - 871; Bacteria - 51326; Metazoa - 66127; Fungi - 19333; Plants - 20217; Viruses - 6153; Other Eukaryotes - 33675 (source: NCBI BLink).  protein_id AT5G56330.1p  transcript_id AT5G56330.1  protein_id AT5G56330.1p  transcript_id AT5G56330.1  
At5g56340	chr5:022818254	0.0	W/22818254-22819444	AT5G56340.1  CDS  gene_syn MCD7.7, MCD7_7  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G26400.2); Has 6738 Blast hits to 6697 proteins in 218 species: Archae - 0; Bacteria - 6; Metazoa - 2241; Fungi - 570; Plants - 2716; Viruses - 47; Other Eukaryotes - 1158 (source: NCBI BLink).  protein_id AT5G56340.1p  transcript_id AT5G56340.1  protein_id AT5G56340.1p  transcript_id AT5G56340.1  
At5g56350	chr5:022822308	0.0	C/22822308-22822529,22821164-22821625,22820254-22821066	AT5G56350.1  CDS  gene_syn MCD7.8, MCD7_8  go_process glycolysis|GO:0006096||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function catalytic activity|GO:0003824||IEA  go_function pyruvate kinase activity|GO:0004743||IEA  go_function potassium ion binding|GO:0030955||IEA  go_component cellular_component|GO:0005575||ND  go_process glycolysis|GO:0006096||ISS  go_function pyruvate kinase activity|GO:0004743||ISS  product pyruvate kinase, putative  note pyruvate kinase, putative; FUNCTIONS IN: pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity; INVOLVED IN: glycolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate kinase, C-terminal-like (InterPro:IPR015795), Pyruvate kinase, active site (InterPro:IPR018209), Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), Pyruvate kinase, alpha/beta (InterPro:IPR015794), Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate kinase (InterPro:IPR001697), Pyruvate kinase, barrel (InterPro:IPR015793); BEST Arabidopsis thaliana protein match is: pyruvate kinase, putative (TAIR:AT4G26390.1); Has 6880 Blast hits to 6803 proteins in 1521 species: Archae - 99; Bacteria - 3257; Metazoa - 491; Fungi - 169; Plants - 287; Viruses - 0; Other Eukaryotes - 2577 (source: NCBI BLink).  protein_id AT5G56350.1p  transcript_id AT5G56350.1  protein_id AT5G56350.1p  transcript_id AT5G56350.1  
At5g56360	chr5:022827821	0.0	C/22827821-22827950,22827604-22827720,22827244-22827339,22826853-22827092,22826247-22826491,22825793-22825861,22825582-22825698,22825050-22825380,22824857-22824958,22824667-22824768,22824530-22824587,22824348-22824416,22824092-22824179,22823883-22823944,22823734-22823785,22823586-22823651	AT5G56360.1  CDS  gene_syn MCD7.9, MCD7_9  go_component endomembrane system|GO:0012505||IEA  go_function calmodulin binding|GO:0005516|11782485|IEP  go_function calmodulin binding|GO:0005516|11782485|TAS  product calmodulin-binding protein  note calmodulin-binding protein; FUNCTIONS IN: calmodulin binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Low density lipoprotein-receptor, class A, cysteine-rich (InterPro:IPR002172), Mannose-6-phosphate receptor, binding (InterPro:IPR009011), Glucosidase II beta subunit-like (InterPro:IPR012913); BEST Arabidopsis thaliana protein match is: protein kinase C substrate, heavy chain-related (TAIR:AT2G42390.1); Has 52492 Blast hits to 29968 proteins in 1344 species: Archae - 253; Bacteria - 7152; Metazoa - 21077; Fungi - 6018; Plants - 1646; Viruses - 404; Other Eukaryotes - 15942 (source: NCBI BLink).  protein_id AT5G56360.1p  transcript_id AT5G56360.1  protein_id AT5G56360.1p  transcript_id AT5G56360.1  
At5g56365	chr5:022828131	0.0	W/22828131-22828204	AT5G56365.1  tRNA  gene_syn 67869.TRNA-ILE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ile (anticodon: AAT)  transcript_id AT5G56365.1  
At5g56367	chr5:022830446	0.0	W/22830446-22833244	AT5G56367.1  mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 1.1e-37 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At5g56368	chr5:022833964	0.0	W/22833964-22834012,22834413-22834645	AT5G56368.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 9 Blast hits to 8 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 1; Plants - 0; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G56368.1p  transcript_id AT5G56368.1  protein_id AT5G56368.1p  transcript_id AT5G56368.1  
At5g56369	chr5:022835446	0.0	W/22835446-22835506,22835603-22835823	AT5G56369.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G56369.1p  transcript_id AT5G56369.1  protein_id AT5G56369.1p  transcript_id AT5G56369.1  
At5g56370	chr5:022836801	0.0	C/22836801-22837619,22836598-22836729,22836200-22836514	AT5G56370.1  CDS  gene_syn MCD7.13, MCD7_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, leaf whorl, embryo, flower; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G56420.2); Has 1459 Blast hits to 1424 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1459; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G56370.1p  transcript_id AT5G56370.1  protein_id AT5G56370.1p  transcript_id AT5G56370.1  
At5g56370	chr5:022836801	0.0	C/22836801-22837619,22836598-22836729,22836200-22836514	AT5G56370.2  CDS  gene_syn MCD7.13, MCD7_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, leaf whorl, embryo, flower; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G56420.2); Has 1459 Blast hits to 1424 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1459; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G56370.2p  transcript_id AT5G56370.2  protein_id AT5G56370.2p  transcript_id AT5G56370.2  
At5g56380	chr5:022839454	0.0	C/22839454-22840353,22839213-22839353,22838836-22839114	AT5G56380.1  CDS  gene_syn MCD7.14, MCD7_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G32375.1); Has 1085 Blast hits to 1055 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1085; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G56380.1p  transcript_id AT5G56380.1  protein_id AT5G56380.1p  transcript_id AT5G56380.1  
At5g56390	chr5:022843413	0.0	C/22843413-22844273,22843176-22843310,22842790-22843080	AT5G56390.1  CDS  gene_syn MCD7.15, MCD7_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G32375.1); Has 1191 Blast hits to 1165 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1191; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G56390.1p  transcript_id AT5G56390.1  protein_id AT5G56390.1p  transcript_id AT5G56390.1  
At5g56400	chr5:022846680	0.0	C/22846680-22847615,22846458-22846598,22846069-22846359	AT5G56400.1  CDS  gene_syn MCD7.16, MCD7_16  go_function oxidoreductase activity|GO:0016491||IEA  go_function transition metal ion binding|GO:0046914||IEA  go_process biological_process|GO:0008150||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: oxidoreductase activity, transition metal ion binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G56420.2); Has 1086 Blast hits to 1061 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1086; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G56400.1p  transcript_id AT5G56400.1  protein_id AT5G56400.1p  transcript_id AT5G56400.1  
At5g56410	chr5:022849429	0.0	C/22849429-22850331,22849226-22849366,22848922-22849149,22848508-22848747	AT5G56410.1  CDS  gene_syn MCD7.17, MCD7_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G62970.1); Has 1251 Blast hits to 958 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1251; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G56410.1p  transcript_id AT5G56410.1  protein_id AT5G56410.1p  transcript_id AT5G56410.1  
At5g56420	chr5:022851480	0.0	C/22851480-22852334,22851259-22851393,22850863-22851141	AT5G56420.1  CDS  gene_syn MCD7.18, MCD7_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G32375.1); Has 1578 Blast hits to 1543 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 4; Plants - 1555; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G56420.1p  transcript_id AT5G56420.1  protein_id AT5G56420.1p  transcript_id AT5G56420.1  
At5g56420	chr5:022851480	0.0	C/22851480-22852334,22851259-22851393,22850863-22851141	AT5G56420.2  CDS  gene_syn MCD7.18, MCD7_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G32375.1); Has 1578 Blast hits to 1543 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 4; Plants - 1555; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G56420.2p  transcript_id AT5G56420.2  protein_id AT5G56420.2p  transcript_id AT5G56420.2  
At5g56430	chr5:022853925	0.0	C/22853925-22854575,22853712-22853840,22853323-22853625	AT5G56430.1  CDS  gene_syn MCD7.19, MCD7_19  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G56440.1); Has 832 Blast hits to 769 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 832; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G56430.1p  transcript_id AT5G56430.1  protein_id AT5G56430.1p  transcript_id AT5G56430.1  
At5g56440	chr5:022856269	0.0	C/22856269-22857117,22855742-22856185	AT5G56440.1  CDS  gene_syn MCD7.20, MCD7_20  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G56420.2); Has 1402 Blast hits to 1364 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1402; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G56440.1p  transcript_id AT5G56440.1  protein_id AT5G56440.1p  transcript_id AT5G56440.1  
At5g56450	chr5:022858772	0.0	C/22858772-22859764	AT5G56450.1  CDS  gene_syn MCD7.21, MCD7_21  go_component mitochondrial inner membrane|GO:0005743||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function binding|GO:0005488||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: binding, transporter activity; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: AAC1 (ADP/ATP CARRIER 1); ATP:ADP antiporter/ binding (TAIR:AT3G08580.2); Has 15271 Blast hits to 9448 proteins in 355 species: Archae - 0; Bacteria - 0; Metazoa - 8078; Fungi - 3877; Plants - 1949; Viruses - 0; Other Eukaryotes - 1367 (source: NCBI BLink).  protein_id AT5G56450.1p  transcript_id AT5G56450.1  protein_id AT5G56450.1p  transcript_id AT5G56450.1  
At5g56452	chr5:022861067	0.0	C/22861067-22861336,22860856-22860984,22860483-22860767	AT5G56452.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G50710.1); Has 241 Blast hits to 234 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 241; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G56452.1p  transcript_id AT5G56452.1  protein_id AT5G56452.1p  transcript_id AT5G56452.1  
At5g56452	chr5:022861070	0.0	C/22861070-22861336,22860856-22860984,22860483-22860767	AT5G56452.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G50710.1); Has 238 Blast hits to 231 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 238; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G56452.2p  transcript_id AT5G56452.2  protein_id AT5G56452.2p  transcript_id AT5G56452.2  
At5g56460	chr5:022865509	0.0	W/22865509-22865572,22866168-22866487,22866677-22866812,22866907-22867043,22867126-22867249,22867421-22867866	AT5G56460.1  CDS  gene_syn MCD7.23, MCD7_23  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G01020.1); Has 80161 Blast hits to 79301 proteins in 2452 species: Archae - 44; Bacteria - 7377; Metazoa - 35060; Fungi - 5996; Plants - 18115; Viruses - 334; Other Eukaryotes - 13235 (source: NCBI BLink).  protein_id AT5G56460.1p  transcript_id AT5G56460.1  protein_id AT5G56460.1p  transcript_id AT5G56460.1  
At5g56470	chr5:022869060	0.0	W/22869060-22869102,22869243-22869958	AT5G56470.1  CDS  gene_syn MCD7.24, MCD7_24  go_component membrane|GO:0016020||IEA  go_function D-arabinono-1,4-lactone oxidase activity|GO:0003885||IEA  go_process biological_process|GO:0008150||ND  go_function oxidoreductase activity|GO:0016491||ISS  product FAD-dependent oxidoreductase family protein  note FAD-dependent oxidoreductase family protein; FUNCTIONS IN: oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: D-arabinono-1,4-lactone oxidase (InterPro:IPR007173); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT1G32300.1); Has 244 Blast hits to 243 proteins in 77 species: Archae - 0; Bacteria - 93; Metazoa - 33; Fungi - 13; Plants - 83; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT5G56470.1p  transcript_id AT5G56470.1  protein_id AT5G56470.1p  transcript_id AT5G56470.1  
At5g56480	chr5:022870511	0.0	C/22870511-22870817,22870326-22870360	AT5G56480.1  CDS  gene_syn MCD7.25, MCD7_25  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT1G32280.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G56480.1p  transcript_id AT5G56480.1  protein_id AT5G56480.1p  transcript_id AT5G56480.1  
At5g56490	chr5:022871507	0.0	W/22871507-22872422,22872519-22872620,22872705-22873420	AT5G56490.1  CDS  gene_syn MCD7.26, MCD7_26  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Plant-specific FAD-dependent oxidoreductase (InterPro:IPR010030), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT1G32300.1); Has 1483 Blast hits to 1413 proteins in 454 species: Archae - 9; Bacteria - 906; Metazoa - 76; Fungi - 147; Plants - 140; Viruses - 0; Other Eukaryotes - 205 (source: NCBI BLink).  protein_id AT5G56490.1p  transcript_id AT5G56490.1  protein_id AT5G56490.1p  transcript_id AT5G56490.1  
At5g56500	chr5:022874058	0.0	W/22874058-22874261,22874337-22874462,22874551-22874688,22874778-22874873,22874962-22875204,22875293-22875527,22875628-22875797,22875875-22875952,22876040-22876111,22876192-22876296,22876397-22876489,22876569-22876661,22876738-22876864,22876953-22876966	AT5G56500.2  CDS  gene_syn MCD7.27, MCD7_27  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process protein folding|GO:0006457||IEA  go_process cellular protein metabolic process|GO:0044267||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  product ATP binding / protein binding  note ATP binding / protein binding; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: mitochondrion, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: CPN60B (CHAPERONIN 60 BETA); ATP binding / protein binding (TAIR:AT1G55490.2); Has 24535 Blast hits to 24507 proteins in 5133 species: Archae - 390; Bacteria - 14021; Metazoa - 1519; Fungi - 965; Plants - 452; Viruses - 2; Other Eukaryotes - 7186 (source: NCBI BLink).  protein_id AT5G56500.2p  transcript_id AT5G56500.2  protein_id AT5G56500.2p  transcript_id AT5G56500.2  
At5g56500	chr5:022874058	0.0	W/22874058-22874261,22874337-22874462,22874551-22874692,22874785-22874873,22874962-22875204,22875293-22875527,22875628-22875797,22875875-22875952,22876040-22876111,22876192-22876296,22876397-22876489,22876569-22876661,22876738-22876864,22876953-22876966	AT5G56500.1  CDS  gene_syn MCD7.27, MCD7_27  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process protein folding|GO:0006457||IEA  go_process cellular protein metabolic process|GO:0044267||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  product ATP binding / protein binding  note ATP binding / protein binding; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: CPN60B (CHAPERONIN 60 BETA); ATP binding / protein binding (TAIR:AT1G55490.2); Has 24449 Blast hits to 24424 proteins in 5128 species: Archae - 390; Bacteria - 14026; Metazoa - 1467; Fungi - 963; Plants - 451; Viruses - 2; Other Eukaryotes - 7150 (source: NCBI BLink).  protein_id AT5G56500.1p  transcript_id AT5G56500.1  protein_id AT5G56500.1p  transcript_id AT5G56500.1  
At5g56510	chr5:022881721	0.0	W/22881721-22882817,22882907-22883069,22883150-22883313,22883401-22883659,22883735-22883842	AT5G56510.1  CDS  gene_syn APUM12, ARABIDOPSIS PUMILIO 12, MKN22.2, MKN22_2, WHITE RUST RESISTANCE 4, WRR4  gene APUM12  go_function RNA binding|GO:0003723||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_function RNA binding|GO:0003723||ISS  product APUM12 (ARABIDOPSIS PUMILIO 12); RNA binding / binding  note ARABIDOPSIS PUMILIO 12 (APUM12); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding region (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: APUM7 (Arabidopsis Pumilio 7); RNA binding / binding (TAIR:AT1G78160.1); Has 2294 Blast hits to 1216 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 659; Fungi - 657; Plants - 449; Viruses - 0; Other Eukaryotes - 529 (source: NCBI BLink).  protein_id AT5G56510.1p  transcript_id AT5G56510.1  protein_id AT5G56510.1p  transcript_id AT5G56510.1  
At5g56520	chr5:022885226	0.0	W/22885226-22885531	AT5G56520.1  CDS  gene_syn MKN22.3, MKN22_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55365.1); Has 10 Blast hits to 10 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G56520.1p  transcript_id AT5G56520.1  protein_id AT5G56520.1p  transcript_id AT5G56520.1  
At5g56530	chr5:022889382	0.0	W/22889382-22889555,22889820-22889906,22889984-22890241,22890321-22890485,22890574-22890627,22890731-22890877,22891062-22891439	AT5G56530.1  CDS  gene_syn MKN22.4, MKN22_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13510.1); Has 440 Blast hits to 403 proteins in 18 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 10; Plants - 424; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G56530.1p  transcript_id AT5G56530.1  protein_id AT5G56530.1p  transcript_id AT5G56530.1  
At5g56540	chr5:022893243	0.0	W/22893243-22893425	AT5G56540.1  CDS  gene_syn AGP14, ARABINOGALACTAN PROTEIN 14, ATAGP14, MKN22.5, MKN22_5  gene AGP14  function Encodes arabinogalactan protein (AGP14).  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  product AGP14 (ARABINOGALACTAN PROTEIN 14)  note ARABINOGALACTAN PROTEIN 14 (AGP14); LOCATED IN: anchored to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: AGP13 (arabinogalactan protein 13) (TAIR:AT4G26320.1); Has 29 Blast hits to 29 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G56540.1p  transcript_id AT5G56540.1  protein_id AT5G56540.1p  transcript_id AT5G56540.1  
At5g56544	chr5:022894502	0.0	W/22894502-22895791	AT5G56544.1  pseudogenic_transcript  pseudo  function pseudogene of arginyl-tRNA synthetase  
At5g56550	chr5:022896240	0.0	C/22896240-22896502,22895847-22896102	AT5G56550.1  CDS  gene_syn ATOXS3, MKN22.7, MKN22_7, OXIDATIVE STRESS 3, OXS3  gene OXS3  function Encodes OXIDATIVE STRESS 3 (OXS3)& 65292; involved in tolerance to heavy metals and oxidative stress.  go_component nuclear speck|GO:0016607|18980652|IDA  go_process response to stress|GO:0006950|18980652|IMP  go_process response to oxidative stress|GO:0006979|18980652|IMP  go_process response to cadmium ion|GO:0046686|18980652|IMP  go_function molecular_function|GO:0003674||ND  product OXS3 (OXIDATIVE STRESS 3)  note OXIDATIVE STRESS 3 (OXS3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress, response to cadmium ion, response to stress; LOCATED IN: nuclear speck; EXPRESSED IN: whole plant; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26288.1); Has 117 Blast hits to 117 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G56550.1p  transcript_id AT5G56550.1  protein_id AT5G56550.1p  transcript_id AT5G56550.1  
At5g56560	chr5:022899724	0.0	W/22899724-22901139,22901231-22901365,22901713-22901985	AT5G56560.1  CDS  gene_syn MKN22.8, MKN22_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product F-box family protein  note F-box family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56570.1); Has 1473 Blast hits to 1044 proteins in 43 species: Archae - 0; Bacteria - 57; Metazoa - 0; Fungi - 0; Plants - 1396; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT5G56560.1p  transcript_id AT5G56560.1  protein_id AT5G56560.1p  transcript_id AT5G56560.1  
At5g56570	chr5:022902736	0.0	W/22902736-22903650,22903741-22903875,22904135-22904404	AT5G56570.1  CDS  gene_syn MIK19.1, MIK19_1  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G56560.1); Has 445 Blast hits to 429 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 440; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G56570.1p  transcript_id AT5G56570.1  protein_id AT5G56570.1p  transcript_id AT5G56570.1  
At5g56580	chr5:022906544	0.0	C/22906544-22906620,22906323-22906407,22906089-22906223,22905765-22905992,22905503-22905685,22905179-22905402,22905034-22905079,22904851-22904943	AT5G56580.1  CDS  gene_syn ANQ1, ARABIDOPSIS NQK1, ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ATMKK6, MAP KINASE KINASE 6, MIK19.2, MIK19_2, MKK6  gene MKK6  function Encodes a member of the MAP Kinase Kinase family of proteins. It can phosphorylate MPK12 in vitro and it can be dephosphorylated by MKP2 in vitro.  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function MAP kinase kinase activity|GO:0004708|11875555|TAS  go_function MAP kinase kinase activity|GO:0004708|19000167|IDA  go_function kinase activity|GO:0016301||ISS  product MKK6 (MAP KINASE KINASE 6); MAP kinase kinase/ kinase  note MAP KINASE KINASE 6 (MKK6); FUNCTIONS IN: MAP kinase kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2); MAP kinase kinase/ kinase (TAIR:AT4G29810.1); Has 91209 Blast hits to 90156 proteins in 3087 species: Archae - 56; Bacteria - 7962; Metazoa - 39998; Fungi - 8164; Plants - 17699; Viruses - 469; Other Eukaryotes - 16861 (source: NCBI BLink).  protein_id AT5G56580.1p  transcript_id AT5G56580.1  protein_id AT5G56580.1p  transcript_id AT5G56580.1  
At5g56590	chr5:022907521	0.0	W/22907521-22907575,22907792-22909075,22909170-22909203,22909289-22909436	AT5G56590.1  CDS  gene_syn MIK19.3, MIK19_3  go_component plasma membrane|GO:0005886|17644812|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT4G29360.1); Has 1809 Blast hits to 1746 proteins in 133 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 37; Plants - 1753; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT5G56590.1p  transcript_id AT5G56590.1  protein_id AT5G56590.1p  transcript_id AT5G56590.1  
At5g56600	chr5:022910588	0.0	C/22910588-22910821,22910017-22910220	AT5G56600.2  CDS  gene_syn MIK19.4, MIK19_4, PFN3, PRF3, PROFILIN, PROFILIN 3  gene PRF3  function Encodes profilin3, a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton. Originally known as profilin5, and later named profilin3. Expressed in vegetative organs.  go_process cytoskeleton organization|GO:0007010||IEA  go_process actin cytoskeleton organization|GO:0030036||IEA  go_function actin binding|GO:0003779||IEA  go_component nucleus|GO:0005634|11977080|IDA  go_component cytoplasm|GO:0005737|11977080|IDA  go_component actin cytoskeleton|GO:0015629||ISS  go_process cytoskeleton organization|GO:0007010||ISS  go_function actin binding|GO:0003779||ISS  product PRF3 (PROFILIN 3); actin binding  note PROFILIN 3 (PRF3); FUNCTIONS IN: actin binding; INVOLVED IN: cytoskeleton organization, actin cytoskeleton organization; LOCATED IN: nucleus, actin cytoskeleton, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Profilin/allergen (InterPro:IPR002097), Profilin, plant (InterPro:IPR005455); BEST Arabidopsis thaliana protein match is: PRF1 (PROFILIN 1); actin binding (TAIR:AT2G19760.1); Has 668 Blast hits to 667 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 89; Fungi - 47; Plants - 492; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT5G56600.2p  transcript_id AT5G56600.2  protein_id AT5G56600.2p  transcript_id AT5G56600.2  
At5g56600	chr5:022910588	0.0	C/22910588-22910821,22910083-22910220,22909882-22910016	AT5G56600.1  CDS  gene_syn MIK19.4, MIK19_4, PFN3, PRF3, PROFILIN, PROFILIN 3  gene PRF3  function Encodes profilin3, a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton. Originally known as profilin5, and later named profilin3. Expressed in vegetative organs.  go_process cytoskeleton organization|GO:0007010||IEA  go_process actin cytoskeleton organization|GO:0030036||IEA  go_function actin binding|GO:0003779||IEA  go_component nucleus|GO:0005634|11977080|IDA  go_component cytoplasm|GO:0005737|11977080|IDA  go_component actin cytoskeleton|GO:0015629||ISS  go_process cytoskeleton organization|GO:0007010||ISS  go_function actin binding|GO:0003779||ISS  product PRF3 (PROFILIN 3); actin binding  note PROFILIN 3 (PRF3); FUNCTIONS IN: actin binding; INVOLVED IN: cytoskeleton organization, actin cytoskeleton organization; LOCATED IN: nucleus, actin cytoskeleton, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Profilin/allergen (InterPro:IPR002097), Profilin, plant (InterPro:IPR005455); BEST Arabidopsis thaliana protein match is: PRF1 (PROFILIN 1); actin binding (TAIR:AT2G19760.1); Has 780 Blast hits to 779 proteins in 201 species: Archae - 0; Bacteria - 2; Metazoa - 120; Fungi - 89; Plants - 493; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT5G56600.1p  transcript_id AT5G56600.1  protein_id AT5G56600.1p  transcript_id AT5G56600.1  
At5g56605	chr5:022915291	0.0	W/22915291-22916027	AT5G56605.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 5.8e-10 P-value blast match to GB:CAA26446 ORF2 (Ty1_Copia-element) (Drosophila melanogaster)  
At5g56610	chr5:022916738	0.0	W/22916738-22916953,22917255-22917377,22917460-22917553,22917636-22917718,22917819-22917908,22918057-22918137	AT5G56610.1  CDS  gene_syn MIK19.6, MIK19_6  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_process dephosphorylation|GO:0016311||IEA  go_function protein tyrosine phosphatase activity|GO:0004725||IEA  go_function protein tyrosine/serine/threonine phosphatase activity|GO:0008138||IEA  go_function phosphatase activity|GO:0016791||IEA  go_component cellular_component|GO:0005575||ND  go_function protein tyrosine/serine/threonine phosphatase activity|GO:0008138||ISS  product dual specificity protein phosphatase family protein  note dual specificity protein phosphatase family protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation, dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Protein-tyrosine phosphatase (InterPro:IPR000387), Protein-tyrosine phosphatase, dual specificity (InterPro:IPR000340); BEST Arabidopsis thaliana protein match is: dual specificity protein phosphatase family protein (TAIR:AT2G35680.1); Has 1303 Blast hits to 1301 proteins in 210 species: Archae - 28; Bacteria - 125; Metazoa - 725; Fungi - 94; Plants - 110; Viruses - 20; Other Eukaryotes - 201 (source: NCBI BLink).  protein_id AT5G56610.1p  transcript_id AT5G56610.1  protein_id AT5G56610.1p  transcript_id AT5G56610.1  
At5g56610	chr5:022916738	0.0	W/22916738-22916953,22917460-22917553,22917636-22917718,22917819-22917908,22918057-22918137	AT5G56610.2  CDS  gene_syn MIK19.6, MIK19_6  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_process dephosphorylation|GO:0016311||IEA  go_function protein tyrosine phosphatase activity|GO:0004725||IEA  go_function protein tyrosine/serine/threonine phosphatase activity|GO:0008138||IEA  go_function phosphatase activity|GO:0016791||IEA  go_component cellular_component|GO:0005575||ND  go_function protein tyrosine/serine/threonine phosphatase activity|GO:0008138||ISS  product dual specificity protein phosphatase family protein  note dual specificity protein phosphatase family protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation, dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Protein-tyrosine phosphatase (InterPro:IPR000387), Protein-tyrosine phosphatase, dual specificity (InterPro:IPR000340); BEST Arabidopsis thaliana protein match is: dual specificity protein phosphatase family protein (TAIR:AT2G35680.1); Has 975 Blast hits to 972 proteins in 156 species: Archae - 24; Bacteria - 75; Metazoa - 599; Fungi - 35; Plants - 96; Viruses - 20; Other Eukaryotes - 126 (source: NCBI BLink).  protein_id AT5G56610.2p  transcript_id AT5G56610.2  protein_id AT5G56610.2p  transcript_id AT5G56610.2  
At5g56620	chr5:022921026	0.0	C/22921026-22921139,22920685-22920877,22919616-22920127,22918925-22919167,22918521-22918619	AT5G56620.1  CDS  gene_syn Arabidopsis NAC domain containing protein 99, MIK19.7, MIK19_7, anac099  gene anac099  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac099 (Arabidopsis NAC domain containing protein 99); transcription factor  note Arabidopsis NAC domain containing protein 99 (anac099); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac075 (Arabidopsis NAC domain containing protein 75); transcription factor (TAIR:AT4G29230.1); Has 1162 Blast hits to 1158 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1160; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G56620.1p  transcript_id AT5G56620.1  protein_id AT5G56620.1p  transcript_id AT5G56620.1  
At5g56630	chr5:022924311	0.0	W/22924311-22924412,22924603-22924649,22924730-22924769,22924910-22925110,22925203-22925361,22925451-22925504,22925595-22925793,22925877-22926139,22926226-22926426,22926537-22926728	AT5G56630.1  CDS  gene_syn MIK19.8, MIK19_8, PFK7, PHOSPHOFRUCTOKINASE 7  gene PFK7  go_component cytosol|GO:0005829|17485088|IDA  go_component 6-phosphofructokinase complex|GO:0005945||ISS  go_process glycolysis|GO:0006096|17485088|IDA  go_process glycolysis|GO:0006096||ISS  go_function 6-phosphofructokinase activity|GO:0003872|17485088|IDA  go_function 6-phosphofructokinase activity|GO:0003872||ISS  product PFK7 (PHOSPHOFRUCTOKINASE 7); 6-phosphofructokinase  note PHOSPHOFRUCTOKINASE 7 (PFK7); FUNCTIONS IN: 6-phosphofructokinase activity; INVOLVED IN: glycolysis; LOCATED IN: cytosol, 6-phosphofructokinase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase TP0108 (InterPro:IPR012004), Phosphofructokinase (InterPro:IPR000023); BEST Arabidopsis thaliana protein match is: PFK3 (PHOSPHOFRUCTOKINASE 3); 6-phosphofructokinase (TAIR:AT4G26270.1); Has 4942 Blast hits to 4511 proteins in 1180 species: Archae - 20; Bacteria - 2586; Metazoa - 576; Fungi - 284; Plants - 227; Viruses - 2; Other Eukaryotes - 1247 (source: NCBI BLink).  protein_id AT5G56630.1p  transcript_id AT5G56630.1  protein_id AT5G56630.1p  transcript_id AT5G56630.1  
At5g56640	chr5:022929608	0.0	C/22929608-22929638,22929356-22929485,22929185-22929269,22928761-22928965,22928602-22928661,22928447-22928499,22928167-22928289,22928005-22928074,22927843-22927921,22927656-22927737,22927534-22927560	AT5G56640.1  CDS  gene_syn MIK19.9, MIK19_9, MIOX5  gene MIOX5  function Myo-Inositol Oxygenase gene family  go_component cytoplasm|GO:0005737||IEA  go_process inositol catabolic process|GO:0019310||IEA  go_function iron ion binding|GO:0005506||IEA  go_function inositol oxygenase activity|GO:0050113||IEA  product MIOX5; inositol oxygenase/ iron ion binding  note MIOX5; FUNCTIONS IN: inositol oxygenase activity, iron ion binding; INVOLVED IN: inositol catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF706 (InterPro:IPR007828); BEST Arabidopsis thaliana protein match is: MIOX4; inositol oxygenase (TAIR:AT4G26260.1); Has 348 Blast hits to 348 proteins in 107 species: Archae - 0; Bacteria - 12; Metazoa - 116; Fungi - 79; Plants - 54; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).  protein_id AT5G56640.1p  transcript_id AT5G56640.1  protein_id AT5G56640.1p  transcript_id AT5G56640.1  
At5g56650	chr5:022930825	0.0	W/22930825-22931178,22931287-22931412,22931487-22931801,22931883-22932005,22932090-22932488	AT5G56650.1  CDS  gene_syn ILL1, MIK19.10, MIK19_10  gene ILL1  function encodes a protein similar to IAA conjugate hydrolases. Enzyme assays with purified GST-tagged protein shows some activity in vitro but too low to be physiologically significant.  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||ISS  go_process auxin metabolic process|GO:0009850|11923288|ISS  go_function metallopeptidase activity|GO:0008237||ISS  go_function IAA-amino acid conjugate hydrolase activity|GO:0010178|11923288|ISS  product ILL1; IAA-amino acid conjugate hydrolase/ metallopeptidase  note ILL1; FUNCTIONS IN: IAA-amino acid conjugate hydrolase activity, metallopeptidase activity; INVOLVED IN: proteolysis, auxin metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase M20 (InterPro:IPR002933), Peptidase M20D, mername-AA028/carboxypeptidase Ss1 (InterPro:IPR017439), Peptidase M20, dimerisation (InterPro:IPR011650), Peptidase M20D, amidohydrolase (InterPro:IPR010168); BEST Arabidopsis thaliana protein match is: ILL2; IAA-Ala conjugate hydrolase/ IAA-amino acid conjugate hydrolase/ metallopeptidase (TAIR:AT5G56660.1); Has 7432 Blast hits to 7427 proteins in 1020 species: Archae - 65; Bacteria - 4253; Metazoa - 43; Fungi - 169; Plants - 187; Viruses - 0; Other Eukaryotes - 2715 (source: NCBI BLink).  protein_id AT5G56650.1p  transcript_id AT5G56650.1  protein_id AT5G56650.1p  transcript_id AT5G56650.1  
At5g56660	chr5:022933278	0.0	W/22933278-22933634,22933803-22933928,22934005-22934319,22934400-22934522,22934613-22935011	AT5G56660.1  CDS  gene_syn ILL2, MIK19.11, MIK19_11  gene ILL2  function encodes IAA-amino acid hydrolase that has a broad range of substrate specificity. It is most active on IAA-Ala among the IAA-conjugate hydrolases tested.  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||ISS  go_process auxin metabolic process|GO:0009850|11923288|IDA  go_function metallopeptidase activity|GO:0008237||ISS  go_function IAA-amino acid conjugate hydrolase activity|GO:0010178|11923288|IDA  go_function IAA-Ala conjugate hydrolase activity|GO:0010179|11923288|IDA  product ILL2; IAA-Ala conjugate hydrolase/ IAA-amino acid conjugate hydrolase/ metallopeptidase  note ILL2; FUNCTIONS IN: IAA-amino acid conjugate hydrolase activity, metallopeptidase activity, IAA-Ala conjugate hydrolase activity; INVOLVED IN: proteolysis, auxin metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase M20 (InterPro:IPR002933), Peptidase M20D, amidohydrolase (InterPro:IPR010168), Peptidase M20D, mername-AA028/carboxypeptidase Ss1 (InterPro:IPR017439), Peptidase M20, dimerisation (InterPro:IPR011650); BEST Arabidopsis thaliana protein match is: ILL1; IAA-amino acid conjugate hydrolase/ metallopeptidase (TAIR:AT5G56650.1); Has 7262 Blast hits to 7257 proteins in 1009 species: Archae - 64; Bacteria - 4144; Metazoa - 41; Fungi - 170; Plants - 188; Viruses - 0; Other Eukaryotes - 2655 (source: NCBI BLink).  protein_id AT5G56660.1p  transcript_id AT5G56660.1  protein_id AT5G56660.1p  transcript_id AT5G56660.1  
At5g56670	chr5:022935978	0.0	C/22935978-22935981,22935743-22935880,22935413-22935459	AT5G56670.1  CDS  gene_syn MIK19.12  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S30 (RPS30C)  note 40S ribosomal protein S30 (RPS30C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S30 (InterPro:IPR006846); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S30 (RPS30B) (TAIR:AT4G29390.1); Has 487 Blast hits to 487 proteins in 186 species: Archae - 2; Bacteria - 0; Metazoa - 223; Fungi - 90; Plants - 56; Viruses - 1; Other Eukaryotes - 115 (source: NCBI BLink).  protein_id AT5G56670.1p  transcript_id AT5G56670.1  protein_id AT5G56670.1p  transcript_id AT5G56670.1  
At5g56680	chr5:022936645	0.0	W/22936645-22937142,22937242-22937832,22937920-22938176,22938262-22938391,22938501-22938559,22938658-22938841	AT5G56680.1  CDS  gene_syn EMB2755, EMBRYO DEFECTIVE 2755, MIK19.13, MIK19_13, SYNC1, SYNC1 ARATH  gene SYNC1  function Encodes a putative cytosolic asparaginyl-tRNA synthetase.  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function aspartate-tRNA ligase activity|GO:0004815||IEA  go_function asparagine-tRNA ligase activity|GO:0004816||IEA  go_function ATP binding|GO:0005524||IEA  go_component mitochondrion|GO:0005739|10824085|IDA  go_component chloroplast|GO:0009507|10824085|IDA  go_process embryonic development ending in seed dormancy|GO:0009793|16297076|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product SYNC1; ATP binding / aminoacyl-tRNA ligase/ asparagine-tRNA ligase/ aspartate-tRNA ligase/ nucleic acid binding / nucleotide binding  note SYNC1; FUNCTIONS IN: in 6 functions; INVOLVED IN: embryonic development ending in seed dormancy, response to cadmium ion; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: cotyledon, guard cell, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Asparaginyl-tRNA synthetase, class IIb (InterPro:IPR004522), WHEP-TRS (InterPro:IPR000738), Aspartyl-tRNA synthetase, class IIb (InterPro:IPR002312), Aminoacyl-tRNA synthetase, class II, conserved region (InterPro:IPR006195), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D, K and N) (InterPro:IPR004364), Aminoacyl-tRNA synthetase, class II (D, K and N)-like (InterPro:IPR018150); BEST Arabidopsis thaliana protein match is: SYNC3; ATP binding / aminoacyl-tRNA ligase/ asparagine-tRNA ligase/ aspartate-tRNA ligase/ nucleic acid binding / nucleotide binding (TAIR:AT1G70980.1); Has 11568 Blast hits to 8270 proteins in 1507 species: Archae - 461; Bacteria - 7823; Metazoa - 536; Fungi - 504; Plants - 138; Viruses - 0; Other Eukaryotes - 2106 (source: NCBI BLink).  protein_id AT5G56680.1p  transcript_id AT5G56680.1  protein_id AT5G56680.1p  transcript_id AT5G56680.1  
At5g56690	chr5:022939723	0.0	W/22939723-22940586,22940678-22940824,22940902-22941099	AT5G56690.1  CDS  gene_syn MIK19.14, MIK19_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G60610.1); Has 1354 Blast hits to 1319 proteins in 15 species: Archae - 0; Bacteria - 4; Metazoa - 7; Fungi - 0; Plants - 1343; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G56690.1p  transcript_id AT5G56690.1  protein_id AT5G56690.1p  transcript_id AT5G56690.1  
At5g56700	chr5:022941991	0.0	W/22941991-22942140,22942254-22942829,22942937-22943077,22943163-22943378	AT5G56700.1  CDS  gene_syn MIK19.15, MIK19_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box protein-related  note F-box protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G60610.1); Has 668 Blast hits to 656 proteins in 7 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 666; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G56700.1p  transcript_id AT5G56700.1  protein_id AT5G56700.1p  transcript_id AT5G56700.1  
At5g56710	chr5:022944688	0.0	C/22944688-22944767,22944003-22944282	AT5G56710.1  CDS  gene_syn MIK19.16, MIK19_16  go_component cell wall|GO:0005618|16287169|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L31 (RPL31C)  note 60S ribosomal protein L31 (RPL31C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L31e (InterPro:IPR000054); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L31 (RPL31B) (TAIR:AT4G26230.1); Has 857 Blast hits to 857 proteins in 264 species: Archae - 102; Bacteria - 2; Metazoa - 389; Fungi - 88; Plants - 124; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).  protein_id AT5G56710.1p  transcript_id AT5G56710.1  protein_id AT5G56710.1p  transcript_id AT5G56710.1  
At5g56710	chr5:022944688	0.0	C/22944688-22944767,22944195-22944282,22944003-22944092	AT5G56710.2  CDS  gene_syn MIK19.16, MIK19_16  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L31 (RPL31C)  note 60S ribosomal protein L31 (RPL31C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L31e (InterPro:IPR000054); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L31 (RPL31B) (TAIR:AT4G26230.1); Has 664 Blast hits to 664 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 368; Fungi - 82; Plants - 123; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).  protein_id AT5G56710.2p  transcript_id AT5G56710.2  protein_id AT5G56710.2p  transcript_id AT5G56710.2  
At5g56720	chr5:022945537	0.0	W/22945537-22945597,22945760-22946718	AT5G56720.1  CDS  gene_syn MIK19.17, MIK19_17  go_component membrane|GO:0016020|17432890|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process glycolysis|GO:0006096||IEA  go_process malate metabolic process|GO:0006108||IEA  go_process metabolic process|GO:0008152||IEA  go_process cellular carbohydrate metabolic process|GO:0044262||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function malate dehydrogenase activity|GO:0016615||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_function L-malate dehydrogenase activity|GO:0030060||IEA  go_function malate dehydrogenase activity|GO:0016615||ISS  product malate dehydrogenase, cytosolic, putative  note malate dehydrogenase, cytosolic, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: cellular carbohydrate metabolic process, glycolysis, malate metabolic process, carbohydrate metabolic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Malate dehydrogenase, NAD-dependent, cytosolic (InterPro:IPR011274), Lactate/malate dehydrogenase (InterPro:IPR001236), Malate dehydrogenase, NAD or NADP (InterPro:IPR010945), NAD(P)-binding (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: malate dehydrogenase, cytosolic, putative (TAIR:AT1G04410.1); Has 6253 Blast hits to 6252 proteins in 1592 species: Archae - 104; Bacteria - 2984; Metazoa - 823; Fungi - 105; Plants - 342; Viruses - 0; Other Eukaryotes - 1895 (source: NCBI BLink).  protein_id AT5G56720.1p  transcript_id AT5G56720.1  protein_id AT5G56720.1p  transcript_id AT5G56720.1  
At5g56730	chr5:022952362	0.0	C/22952362-22952576,22951855-22952101,22951645-22951770,22951423-22951560,22951217-22951351,22950957-22951130,22950659-22950796,22950503-22950572,22950198-22950411,22949774-22949879,22949522-22949663,22949430-22949449,22948899-22949063,22948667-22948816,22948495-22948586,22948115-22948196,22947914-22947997,22947721-22947837,22947523-22947633,22947347-22947427,22947057-22947254,22946906-22946971	AT5G56730.1  CDS  gene_syn MIK19.18, MIK19_18  go_component chloroplast|GO:0009507|18431481|IDA  go_process proteolysis|GO:0006508||IEA  go_function catalytic activity|GO:0003824||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function metal ion binding|GO:0046872||IEA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process proteolysis|GO:0006508||ISS  go_function metalloendopeptidase activity|GO:0004222||ISS  product peptidase M16 family protein / insulinase family protein  note peptidase M16 family protein / insulinase family protein; FUNCTIONS IN: metalloendopeptidase activity, catalytic activity, zinc ion binding, metal ion binding; INVOLVED IN: proteolysis; LOCATED IN: mitochondrion, chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M16, zinc-binding site (InterPro:IPR001431), Peptidase M16, C-terminal (InterPro:IPR007863), Peptidase M16, N-terminal (InterPro:IPR011765), Metalloenzyme, LuxS/M16 peptidase-like, metal-binding (InterPro:IPR011249), Peptidase M16, core (InterPro:IPR011237); BEST Arabidopsis thaliana protein match is: metalloendopeptidase (TAIR:AT5G42390.1); Has 5686 Blast hits to 5644 proteins in 1211 species: Archae - 12; Bacteria - 3644; Metazoa - 517; Fungi - 231; Plants - 159; Viruses - 3; Other Eukaryotes - 1120 (source: NCBI BLink).  protein_id AT5G56730.1p  transcript_id AT5G56730.1  protein_id AT5G56730.1p  transcript_id AT5G56730.1  
At5g56740	chr5:022955499	0.0	C/22955499-22955577,22955352-22955393,22954889-22954998,22954711-22954779,22954572-22954610,22954417-22954493,22954204-22954291,22954010-22954091,22953756-22953913,22953009-22953668	AT5G56740.1  CDS  gene_syn HAC07, HAC7, HAG02, HAG2, HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2, MIK19.19, MIK19_19  gene HAG2  function Encodes an enzyme with histone acetyltransferase activity. Histone H4 is the primary substrate for the enzyme. Prior acetylation of lysine 12 of histone H4 reduces radioactive acetylation by HAG2. HAG2 acetylates histone H4 lysine 12.  go_process chromatin silencing at telomere|GO:0006348||IEA  go_process metabolic process|GO:0008152||IEA  go_process histone acetylation|GO:0016573||IEA  go_component nucleus|GO:0005634|17877703|IDA  go_function histone acetyltransferase activity|GO:0004402|12466527|ISS  go_function histone acetyltransferase activity|GO:0004402||ISS  go_function H4 histone acetyltransferase activity|GO:0010485|17877703|IDA  product HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2); H4 histone acetyltransferase/ histone acetyltransferase  note HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2 (HAG2); FUNCTIONS IN: H4 histone acetyltransferase activity, histone acetyltransferase activity; INVOLVED IN: histone acetylation, metabolic process, chromatin silencing at telomere; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone acetyltransferase type B, catalytic subunit (InterPro:IPR017380), GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 272 Blast hits to 272 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 102; Fungi - 101; Plants - 27; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT5G56740.1p  transcript_id AT5G56740.1  protein_id AT5G56740.1p  transcript_id AT5G56740.1  
At5g56745	chr5:022955841	0.0	W/22955841-22955912	AT5G56745.1  tRNA  gene_syn 67871.TRNA-PRO-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT5G56745.1  
At5g56747	chr5:022956286	0.0	W/22956286-22957213	AT5G56747.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 1.2e-45 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At5g56750	chr5:022957986	0.0	W/22957986-22958045,22958891-22958990,22959065-22959162,22959253-22959341,22959426-22959486,22959578-22959742,22959835-22959891,22959989-22960044,22960156-22960291,22960388-22960606	AT5G56750.1  CDS  gene_syn MIK19.22, MIK19_22  go_component cellular_component|GO:0005575||ND  go_process cell differentiation|GO:0030154||ISS  go_function molecular_function|GO:0003674||ND  product Ndr family protein  note Ndr family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell differentiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pollen specific protein SF21 (InterPro:IPR015511), Ndr (InterPro:IPR004142); BEST Arabidopsis thaliana protein match is: Ndr family protein (TAIR:AT2G19620.1); Has 620 Blast hits to 620 proteins in 81 species: Archae - 0; Bacteria - 31; Metazoa - 480; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT5G56750.1p  transcript_id AT5G56750.1  protein_id AT5G56750.1p  transcript_id AT5G56750.1  
At5g56760	chr5:022962139	0.0	C/22962139-22962582,22961498-22961992	AT5G56760.1  CDS  gene_syn ARABIDOPSIS THALIANA SERINE ACETYLTRANSFERASE 1;1, ATSERAT1;1, MIK19.23, MIK19_23, SAT-52, SAT5, SERINE ACETYLTRANSFERASE, SERINE ACETYLTRANSFERASE 5, SERINE ACETYLTRANSFERASE 52  gene ATSERAT1;1  function Encodes a cytosolic serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system.  go_process cysteine biosynthetic process from serine|GO:0006535||IEA  go_component cytosol|GO:0005829|9830017|IDA  go_function serine O-acetyltransferase activity|GO:0009001|9048879|IGI  product ATSERAT1;1 (ARABIDOPSIS THALIANA SERINE ACETYLTRANSFERASE 1;1); serine O-acetyltransferase  note ARABIDOPSIS THALIANA SERINE ACETYLTRANSFERASE 1;1 (ATSERAT1;1); FUNCTIONS IN: serine O-acetyltransferase activity; INVOLVED IN: cysteine biosynthetic process from serine; LOCATED IN: cytosol; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Hexapeptide transferase, conserved site (InterPro:IPR018357), Serine O-acetyltransferase (InterPro:IPR005881), Trimeric LpxA-like (InterPro:IPR011004), Bacterial transferase hexapeptide repeat (InterPro:IPR001451), Serine acetyltransferase, N-terminal (InterPro:IPR010493); BEST Arabidopsis thaliana protein match is: ATSERAT2;2 (SERINE ACETYLTRANSFERASE 2;2); serine O-acetyltransferase (TAIR:AT3G13110.1); Has 11886 Blast hits to 11874 proteins in 1361 species: Archae - 189; Bacteria - 7086; Metazoa - 2; Fungi - 152; Plants - 170; Viruses - 0; Other Eukaryotes - 4287 (source: NCBI BLink).  protein_id AT5G56760.1p  transcript_id AT5G56760.1  protein_id AT5G56760.1p  transcript_id AT5G56760.1  
At5g56770	chr5:022963868	0.0	C/22963868-22963989,22963353-22963755,22962994-22963233	AT5G56770.1  CDS  gene_syn MIK19.24, MIK19_24  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56780.1); Has 26 Blast hits to 26 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G56770.1p  transcript_id AT5G56770.1  protein_id AT5G56770.1p  transcript_id AT5G56770.1  
At5g56780	chr5:022966140	0.0	C/22966140-22966241,22965455-22965814,22964384-22965373	AT5G56780.1  CDS  gene_syn MIK19.25, MIK19_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, petal differentiation and expansion stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26170.1); Has 65 Blast hits to 35 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G56780.1p  transcript_id AT5G56780.1  protein_id AT5G56780.1p  transcript_id AT5G56780.1  
At5g56790	chr5:022968610	0.0	W/22968610-22968781,22968925-22969079,22969178-22969272,22969364-22970370,22970454-22970614,22970698-22970774,22970858-22971005,22971091-22971240,22971347-22971391	AT5G56790.1  CDS  gene_syn MIK19.26, MIK19_26  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase, active site (InterPro:IPR008266), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G13690.1); Has 81134 Blast hits to 80145 proteins in 3286 species: Archae - 46; Bacteria - 7452; Metazoa - 35883; Fungi - 6060; Plants - 18320; Viruses - 297; Other Eukaryotes - 13076 (source: NCBI BLink).  protein_id AT5G56790.1p  transcript_id AT5G56790.1  protein_id AT5G56790.1p  transcript_id AT5G56790.1  
At5g56795	chr5:022972369	0.0	C/22972369-22972441,22972049-22972131	AT5G56795.1  CDS  gene_syn MT1B  gene MT1B  function one of the five metallothioneins (MTs) genes identified in Arabidopsis. MTs are cysteine-rich proteins required for heavy metal tolerance. The MT1b gene, however, is indicated to be inactive.  go_component endomembrane system|GO:0012505||IEA  go_process response to metal ion|GO:0010038|7565594|ISS  go_function metal ion binding|GO:0046872|7565594|ISS  product MT1B; metal ion binding  note MT1B; FUNCTIONS IN: metal ion binding; INVOLVED IN: response to metal ion; LOCATED IN: endomembrane system; EXPRESSED IN: root, leaf; EXPRESSED DURING: seedling growth; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G56795.1p  transcript_id AT5G56795.1  protein_id AT5G56795.1p  transcript_id AT5G56795.1  
At5g56800	chr5:022972989	0.0	W/22972989-22973615,22973706-22973840,22973936-22974208	AT5G56800.1  CDS  gene_syn MIK19.27, MIK19_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G56560.1); Has 519 Blast hits to 504 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 515; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G56800.1p  transcript_id AT5G56800.1  protein_id AT5G56800.1p  transcript_id AT5G56800.1  
At5g56810	chr5:022974520	0.0	W/22974520-22975404,22975489-22975626,22975708-22975992	AT5G56810.1  CDS  gene_syn MIK19.28, MIK19_28  go_process biological_process|GO:0008150||ND  product F-box family protein  note F-box family protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G56820.1); Has 1379 Blast hits to 1348 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1379; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G56810.1p  transcript_id AT5G56810.1  protein_id AT5G56810.1p  transcript_id AT5G56810.1  
At5g56820	chr5:022976334	0.0	W/22976334-22977179,22977286-22977420,22977512-22977838	AT5G56820.1  CDS  gene_syn MIK19.29, MIK19_29  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G56810.1); Has 1387 Blast hits to 1352 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1387; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G56820.1p  transcript_id AT5G56820.1  protein_id AT5G56820.1p  transcript_id AT5G56820.1  
At5g56830	chr5:022978331	0.0	W/22978331-22979059	AT5G56830.1  mRNA_TE_gene  pseudo  gene_syn MIK19.30, MIK19_30  note Transposable element gene, copia-like retrotransposon family, has a 8.7e-14 P-value blast match to gb|AAO73521.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At5g56840	chr5:022980789	0.0	W/22980789-22981056,22981380-22981579,22981919-22982152	AT5G56840.1  CDS  gene_syn MIK19.31, MIK19_31  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product DNA-binding family protein  note DNA-binding family protein; FUNCTIONS IN: transcription factor activity, DNA binding, nucleic acid binding; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Zinc finger, CCHC-type (InterPro:IPR001878), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT3G16350.1); Has 519 Blast hits to 518 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 473; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT5G56840.1p  transcript_id AT5G56840.1  protein_id AT5G56840.1p  transcript_id AT5G56840.1  
At5g56850	chr5:022986910	0.0	C/22986910-22987011,22986381-22986818,22985779-22986291,22985567-22985695,22985432-22985491	AT5G56850.2  CDS  gene_syn MIK19.5, MIK19_5  product unknown protein  note unknown protein; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 1689 Blast hits to 1330 proteins in 179 species: Archae - 7; Bacteria - 130; Metazoa - 604; Fungi - 82; Plants - 49; Viruses - 2; Other Eukaryotes - 815 (source: NCBI BLink).  protein_id AT5G56850.2p  transcript_id AT5G56850.2  protein_id AT5G56850.2p  transcript_id AT5G56850.2  
At5g56850	chr5:022987953	0.0	C/22987953-22987977,22987800-22987859,22987670-22987721,22987499-22987572,22987290-22987420,22987117-22987195,22986910-22987004,22986381-22986818,22985779-22986291,22985567-22985695,22985432-22985491	AT5G56850.1  CDS  gene_syn MIK19.5, MIK19_5  product unknown protein  note unknown protein; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 2421 Blast hits to 1988 proteins in 222 species: Archae - 14; Bacteria - 205; Metazoa - 839; Fungi - 154; Plants - 92; Viruses - 2; Other Eukaryotes - 1115 (source: NCBI BLink).  protein_id AT5G56850.1p  transcript_id AT5G56850.1  protein_id AT5G56850.1p  transcript_id AT5G56850.1  
At5g56860	chr5:022991079	0.0	C/22991079-22991351,22990322-22990801,22989630-22990073	AT5G56860.1  CDS  gene_syn GATA, nitrate-inducible, carbon metabolism-involved, GNC, MPI10.2, MPI10_2  gene GNC  go_component nucleus|GO:0005634||IEA  go_process glucose mediated signaling|GO:0010255|16262716|IMP  go_process regulation of nitrogen compound metabolic process|GO:0051171|16262716|IEP  go_process regulation of nitrogen compound metabolic process|GO:0051171|16262716|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product GNC (GATA, nitrate-inducible, carbon metabolism-involved); transcription factor  note GATA, nitrate-inducible, carbon metabolism-involved (GNC); FUNCTIONS IN: transcription factor activity; INVOLVED IN: glucose mediated signaling, regulation of nitrogen compound metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1); transcription factor (TAIR:AT4G26150.1); Has 1361 Blast hits to 1315 proteins in 149 species: Archae - 0; Bacteria - 2; Metazoa - 207; Fungi - 446; Plants - 386; Viruses - 0; Other Eukaryotes - 320 (source: NCBI BLink).  protein_id AT5G56860.1p  transcript_id AT5G56860.1  protein_id AT5G56860.1p  transcript_id AT5G56860.1  
At5g56865	chr5:022997962	0.0	C/22997962-22998126	AT5G56865.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G56865.1p  transcript_id AT5G56865.1  protein_id AT5G56865.1p  transcript_id AT5G56865.1  
At5g56870	chr5:023004284	0.0	W/23004284-23004457,23004734-23004829,23004929-23005041,23005147-23005213,23005321-23005413,23005532-23005675,23005998-23006086,23006213-23006318,23006414-23006498,23006575-23006693,23006780-23006941,23007030-23007205,23007298-23007407,23007500-23007609,23007697-23007807,23007899-23008009,23008102-23008410	AT5G56870.1  CDS  gene_syn BGAL4, MPI10.3, MPI10_3, beta-galactosidase 4  gene BGAL4  go_component beta-galactosidase complex|GO:0009341||IEA  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process lactose catabolic process|GO:0005990||IEA  go_process lactose catabolic process, using glucoside 3-dehydrogenase|GO:0019513||IEA  go_process lactose catabolic process via UDP-galactose|GO:0019515||IEA  go_function beta-galactosidase activity|GO:0004565|15517348|TAS  go_function beta-galactosidase activity|GO:0004565||ISS  product BGAL4 (beta-galactosidase 4); beta-galactosidase  note beta-galactosidase 4 (BGAL4); FUNCTIONS IN: beta-galactosidase activity; INVOLVED IN: lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process; LOCATED IN: endomembrane system, beta-galactosidase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: BGAL12 (beta-galactosidase 12); beta-galactosidase/ catalytic/ cation binding (TAIR:AT4G26140.1); Has 1249 Blast hits to 1158 proteins in 255 species: Archae - 11; Bacteria - 358; Metazoa - 340; Fungi - 120; Plants - 372; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT5G56870.1p  transcript_id AT5G56870.1  protein_id AT5G56870.1p  transcript_id AT5G56870.1  
At5g56880	chr5:023009140	0.0	C/23009140-23009619	AT5G56880.1  CDS  gene_syn MPI10.4, MPI10_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, flower, pedicel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 5 Blast hits to 5 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G56880.1p  transcript_id AT5G56880.1  protein_id AT5G56880.1p  transcript_id AT5G56880.1  
At5g56890	chr5:023015490	0.0	C/23015490-23015559,23014986-23015228,23014712-23014852,23014490-23014627,23014321-23014404,23014145-23014237,23013949-23014068,23013611-23013856,23013389-23013526,23013188-23013283,23012422-23013090,23011959-23012348,23011562-23011808,23010801-23011467	AT5G56890.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ALE2 (Abnormal Leaf Shape 2); kinase (TAIR:AT2G20300.1); Has 171674 Blast hits to 125873 proteins in 3714 species: Archae - 192; Bacteria - 19512; Metazoa - 74379; Fungi - 22298; Plants - 26881; Viruses - 2718; Other Eukaryotes - 25694 (source: NCBI BLink).  protein_id AT5G56890.1p  transcript_id AT5G56890.1  protein_id AT5G56890.1p  transcript_id AT5G56890.1  
At5g56900	chr5:023021834	0.0	C/23021834-23021850,23021620-23021737,23020926-23021350,23020551-23020836,23020380-23020473,23020145-23020290,23019750-23019878	AT5G56900.1  CDS  gene_syn MHM17.1, MHM17_1  go_function nucleic acid binding|GO:0003676||IEA  go_function catalytic activity|GO:0003824||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product CwfJ-like family protein / zinc finger (CCCH-type) family protein  note CwfJ-like family protein / zinc finger (CCCH-type) family protein; FUNCTIONS IN: zinc ion binding, catalytic activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Histidine triad-like motif (InterPro:IPR011146), Protein similar to CwfJ, C-terminal 1 (InterPro:IPR006768), Protein similar to CwfJ, C-terminal 2 (InterPro:IPR006767); BEST Arabidopsis thaliana protein match is: CwfJ-like family protein (TAIR:AT1G56290.1); Has 581 Blast hits to 517 proteins in 126 species: Archae - 0; Bacteria - 2; Metazoa - 270; Fungi - 210; Plants - 44; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT5G56900.1p  transcript_id AT5G56900.1  protein_id AT5G56900.1p  transcript_id AT5G56900.1  
At5g56900	chr5:023022599	0.0	C/23022599-23022670,23022238-23022511,23022041-23022167,23021834-23021953,23021620-23021737,23020926-23021350,23020551-23020836,23020380-23020473,23020145-23020290,23019750-23019878	AT5G56900.2  CDS  gene_syn MHM17.1, MHM17_1  go_function nucleic acid binding|GO:0003676||IEA  go_function catalytic activity|GO:0003824||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product CwfJ-like family protein / zinc finger (CCCH-type) family protein  note CwfJ-like family protein / zinc finger (CCCH-type) family protein; FUNCTIONS IN: zinc ion binding, catalytic activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Histidine triad-like motif (InterPro:IPR011146), Protein similar to CwfJ, C-terminal 1 (InterPro:IPR006768), Protein similar to CwfJ, C-terminal 2 (InterPro:IPR006767); BEST Arabidopsis thaliana protein match is: CwfJ-like family protein (TAIR:AT1G56290.1); Has 671 Blast hits to 575 proteins in 129 species: Archae - 0; Bacteria - 8; Metazoa - 298; Fungi - 245; Plants - 51; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT5G56900.2p  transcript_id AT5G56900.2  protein_id AT5G56900.2p  transcript_id AT5G56900.2  
At5g56910	chr5:023022996	0.0	W/23022996-23023172,23023270-23023609,23023706-23023759,23023905-23024008	AT5G56910.1  CDS  gene_syn MHM17.2, MHM17_2  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56920.1); Has 34 Blast hits to 34 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G56910.1p  transcript_id AT5G56910.1  protein_id AT5G56910.1p  transcript_id AT5G56910.1  
At5g56920	chr5:023025000	0.0	W/23025000-23025182,23025265-23025765	AT5G56920.1  CDS  gene_syn MHM17.3, MHM17_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56910.1); Has 27 Blast hits to 27 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G56920.1p  transcript_id AT5G56920.1  protein_id AT5G56920.1p  transcript_id AT5G56920.1  
At5g56930	chr5:023030409	0.0	C/23030409-23030565,23029534-23030276,23029391-23029456,23029157-23029288,23029021-23029071,23028783-23028923,23027949-23028686	AT5G56930.1  CDS  gene_syn MHM17.4, MHM17_4, emb1789, embryo defective 1789  gene emb1789  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function nucleic acid binding|GO:0003676||ISS  product emb1789 (embryo defective 1789); nucleic acid binding / zinc ion binding  note embryo defective 1789 (emb1789); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: embryonic development ending in seed dormancy; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); Has 3676 Blast hits to 1381 proteins in 193 species: Archae - 0; Bacteria - 80; Metazoa - 1029; Fungi - 472; Plants - 144; Viruses - 3; Other Eukaryotes - 1948 (source: NCBI BLink).  protein_id AT5G56930.1p  transcript_id AT5G56930.1  protein_id AT5G56930.1p  transcript_id AT5G56930.1  
At5g56940	chr5:023030879	0.0	W/23030879-23031011,23031099-23031144,23031972-23032200	AT5G56940.1  CDS  gene_syn MHM17.5, MHM17_5  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein S16 family protein  note ribosomal protein S16 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S16 (InterPro:IPR000307); BEST Arabidopsis thaliana protein match is: SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16); structural constituent of ribosome (TAIR:AT4G34620.1); Has 5817 Blast hits to 5817 proteins in 1663 species: Archae - 0; Bacteria - 2935; Metazoa - 109; Fungi - 86; Plants - 404; Viruses - 0; Other Eukaryotes - 2283 (source: NCBI BLink).  protein_id AT5G56940.1p  transcript_id AT5G56940.1  protein_id AT5G56940.1p  transcript_id AT5G56940.1  
At5g56950	chr5:023032618	0.0	W/23032618-23032663,23032746-23032789,23032918-23033013,23033223-23033315,23033448-23033535,23033624-23033685,23033774-23033958,23034091-23034268,23034356-23034399,23034546-23034747,23034844-23034861,23035231-23035299	AT5G56950.1  CDS  gene_syn MHM17.6, MHM17_6, NAP1;3, NFA03, NFA3, NUCLEOSOME ASSEMBLY PROTEIN 1;3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 03, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A3  gene NAP1;3  function Encodes a member of a small gene family of proteins with similarity to nucleosome assembly proteins.May function in nucleotide excision repair. Loss of function mutations have no obvious visible phenotypes but do seem to affect transcription of NER related genes.  go_component nucleus|GO:0005634|19228338|IDA  go_component nucleus|GO:0005634||ISS  go_component cytoplasm|GO:0005737|19228338|IDA  go_process DNA repair|GO:0006281|19228338|IGI  go_process nucleosome assembly|GO:0006334||ISS  go_process DNA mediated transformation|GO:0009294|17827277|IMP  go_function DNA binding|GO:0003677||ISS  product NAP1;3 (NUCLEOSOME ASSEMBLY PROTEIN 1;3); DNA binding  note NUCLEOSOME ASSEMBLY PROTEIN 1;3 (NAP1;3); FUNCTIONS IN: DNA binding; INVOLVED IN: DNA repair, DNA mediated transformation, nucleosome assembly; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleosome assembly protein (NAP) (InterPro:IPR002164); BEST Arabidopsis thaliana protein match is: NAP1;1 (NUCLEOSOME ASSEMBLY PROTEIN1;1); DNA binding (TAIR:AT4G26110.1); Has 26022 Blast hits to 13560 proteins in 666 species: Archae - 39; Bacteria - 838; Metazoa - 12044; Fungi - 3545; Plants - 1508; Viruses - 386; Other Eukaryotes - 7662 (source: NCBI BLink).  protein_id AT5G56950.1p  transcript_id AT5G56950.1  protein_id AT5G56950.1p  transcript_id AT5G56950.1  
At5g56960	chr5:023041020	0.0	C/23041020-23041174,23040812-23040917,23039703-23040392,23039195-23039578,23038703-23038768	AT5G56960.1  CDS  gene_syn MHM17.7, MHM17_7  go_component nucleus|GO:0005634||IEA  go_process response to chitin|GO:0010200|17722694|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to chitin, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT5G57150.3); Has 1304 Blast hits to 1304 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 176; Fungi - 32; Plants - 1084; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT5G56960.1p  transcript_id AT5G56960.1  protein_id AT5G56960.1p  transcript_id AT5G56960.1  
At5g56970	chr5:023047636	0.0	C/23047636-23048245,23046058-23046185,23045712-23045972,23045342-23045610,23044944-23045247	AT5G56970.1  CDS  gene_syn ATCKX3, CKX3, CYTOKININ OXIDASE, CYTOKININ OXIDASE 3, MHM17.8, MHM17_8  gene CKX3  function It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.  go_component vacuole|GO:0005773|14555694|IDA  go_process cytokinin catabolic process|GO:0009823|11154345|TAS  go_process cytokinin catabolic process|GO:0009823||ISS  go_function amine oxidase activity|GO:0008131|11154345|IDA  go_function cytokinin dehydrogenase activity|GO:0019139|14555694|TAS  go_function cytokinin dehydrogenase activity|GO:0019139|16139211|TAS  go_function cytokinin dehydrogenase activity|GO:0019139||ISS  product CKX3 (CYTOKININ OXIDASE 3); amine oxidase/ cytokinin dehydrogenase  note CYTOKININ OXIDASE 3 (CKX3); FUNCTIONS IN: cytokinin dehydrogenase activity, amine oxidase activity; INVOLVED IN: cytokinin catabolic process; LOCATED IN: vacuole; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cytokinin dehydrogenase 1, FAD and cytokinin binding (InterPro:IPR015345), FAD-binding, type 2 (InterPro:IPR016166), Oxygen oxidoreductase covalent FAD-binding site (InterPro:IPR006093), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: CKX4 (CYTOKININ OXIDASE 4); amine oxidase/ cytokinin dehydrogenase (TAIR:AT4G29740.2); Has 4850 Blast hits to 4848 proteins in 818 species: Archae - 89; Bacteria - 2421; Metazoa - 126; Fungi - 1050; Plants - 435; Viruses - 0; Other Eukaryotes - 729 (source: NCBI BLink).  protein_id AT5G56970.1p  transcript_id AT5G56970.1  protein_id AT5G56970.1p  transcript_id AT5G56970.1  
At5g56975	chr5:023054771	0.0	C/23054771-23054844	AT5G56975.1  tRNA  gene_syn 67873.TRNA-VAL-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Val (anticodon: CAC)  transcript_id AT5G56975.1  
At5g56980	chr5:023056574	0.0	C/23056574-23057713	AT5G56980.1  CDS  gene_syn MHM17.10, MHM17_10  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26130.1); Has 64 Blast hits to 53 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G56980.1p  transcript_id AT5G56980.1  protein_id AT5G56980.1p  transcript_id AT5G56980.1  
At5g56990	chr5:023062138	0.0	C/23062138-23062311,23061849-23061986,23061563-23061758,23061270-23061323,23061070-23061182	AT5G56990.1  CDS  gene_syn MHM17.11, MHM17_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56910.1); Has 18 Blast hits to 18 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G56990.1p  transcript_id AT5G56990.1  protein_id AT5G56990.1p  transcript_id AT5G56990.1  
At5g57000	chr5:023065176	0.0	C/23065176-23065203,23064604-23064739,23064447-23064478,23063870-23064234	AT5G57000.2  CDS  gene_syn MHM17.12, MHM17_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72690.1); Has 101 Blast hits to 75 proteins in 18 species: Archae - 0; Bacteria - 4; Metazoa - 27; Fungi - 8; Plants - 44; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT5G57000.2p  transcript_id AT5G57000.2  protein_id AT5G57000.2p  transcript_id AT5G57000.2  
At5g57000	chr5:023065176	0.0	C/23065176-23065203,23064604-23064739,23064447-23064478,23063870-23064237	AT5G57000.1  CDS  gene_syn MHM17.12, MHM17_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72690.1); Has 111 Blast hits to 85 proteins in 23 species: Archae - 0; Bacteria - 6; Metazoa - 31; Fungi - 7; Plants - 42; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT5G57000.1p  transcript_id AT5G57000.1  protein_id AT5G57000.1p  transcript_id AT5G57000.1  
At5g57010	chr5:023068207	0.0	W/23068207-23068691,23068771-23068873,23068957-23069022,23069109-23069197,23069293-23069380,23069456-23069788,23069880-23070203	AT5G57010.1  CDS  gene_syn MHM17.13, MHM17_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product calmodulin-binding family protein  note calmodulin-binding family protein; FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: calmodulin-binding family protein (TAIR:AT2G26190.1); Has 224 Blast hits to 145 proteins in 37 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 80; Plants - 137; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G57010.1p  transcript_id AT5G57010.1  protein_id AT5G57010.1p  transcript_id AT5G57010.1  
At5g57015	chr5:023071508	0.0	W/23071508-23071583,23071675-23071715,23072013-23072082,23072191-23072339,23072415-23072510,23072592-23072662,23072747-23072808,23072896-23072959,23073045-23073129,23073211-23073337,23073417-23073566,23073652-23073749,23074359-23074577	AT5G57015.1  CDS  gene_syn Casein Kinase I-like 12, ckl12  gene ckl12  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cytoplasm|GO:0005737|16126836|IDA  go_function kinase activity|GO:0016301||ISS  product ckl12 (Casein Kinase I-like 12); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note Casein Kinase I-like 12 (ckl12); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CK1 (CASEIN KINASE 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT4G26100.1); Has 52600 Blast hits to 52260 proteins in 1490 species: Archae - 10; Bacteria - 5632; Metazoa - 23629; Fungi - 4936; Plants - 7459; Viruses - 379; Other Eukaryotes - 10555 (source: NCBI BLink).  protein_id AT5G57015.1p  transcript_id AT5G57015.1  protein_id AT5G57015.1p  transcript_id AT5G57015.1  
At5g57020	chr5:023075451	0.0	W/23075451-23076755	AT5G57020.1  CDS  gene_syn ARABIDOPSIS THALIANA MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE, ATNMT1, MHM17.15, MHM17_15, MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE, N-MYRISTOYLTRANSFERASE 1, NMT1  gene NMT1  function Arabidopsis thaliana myristoyl-CoA:protein N-myristoyltransferase.  go_component cytosol|GO:0005829|17827350|IDA  go_component ribosome|GO:0005840|10734119|IDA  go_process N-terminal protein myristoylation|GO:0006499|10734119|IDA  go_process embryonic shoot morphogenesis|GO:0010064|17827350|IMP  go_process growth|GO:0040007|10734119|IMP  go_function glycylpeptide N-tetradecanoyltransferase activity|GO:0004379|17827350|IDA  go_function myristoyltransferase activity|GO:0019107|10734119|IDA  go_function myristoyltransferase activity|GO:0019107|10734119|ISS  product NMT1 (MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE); glycylpeptide N-tetradecanoyltransferase/ myristoyltransferase  note MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE (NMT1); FUNCTIONS IN: myristoyltransferase activity, glycylpeptide N-tetradecanoyltransferase activity; INVOLVED IN: growth, N-terminal protein myristoylation, embryonic shoot morphogenesis; LOCATED IN: cytosol, ribosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Myristoyl-CoA:protein N-myristoyltransferase (InterPro:IPR000903), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: N-myristoyltransferase-related (TAIR:AT2G44175.1); Has 535 Blast hits to 527 proteins in 175 species: Archae - 0; Bacteria - 0; Metazoa - 186; Fungi - 176; Plants - 41; Viruses - 5; Other Eukaryotes - 127 (source: NCBI BLink).  protein_id AT5G57020.1p  transcript_id AT5G57020.1  protein_id AT5G57020.1p  transcript_id AT5G57020.1  
At5g57030	chr5:023077398	0.0	W/23077398-23077691,23077780-23077951,23078033-23078168,23078275-23078385,23078454-23078556,23078644-23078787,23078870-23078977,23079053-23079149,23079241-23079351,23079442-23079574,23079653-23079818	AT5G57030.1  CDS  gene_syn LUT2, LUTEIN DEFICIENT 2, LYCOPENE EPSILON-CYCLASE  gene LUT2  function Lutein-deficient 2 (LUT2) required for lutein biosynthesis, member of the xanthophyll class of carotenoids. Encodes lycopene epsilon cyclase  go_component chloroplast|GO:0009507|8837512|TAS  go_component chloroplast|GO:0009507||TAS  go_process photosynthesis, light harvesting|GO:0009765||TAS  go_process carotenoid biosynthetic process|GO:0016117|8837513|IMP  go_process carotene biosynthetic process|GO:0016120|8837512|IGI  go_process xanthophyll biosynthetic process|GO:0016123|16890225|IGI  go_function lycopene epsilon cyclase activity|GO:0045435|8837512|IGI  go_function lycopene epsilon cyclase activity|GO:0045435|8837513|TAS  product LUT2 (LUTEIN DEFICIENT 2); lycopene epsilon cyclase  note LUTEIN DEFICIENT 2 (LUT2); FUNCTIONS IN: lycopene epsilon cyclase activity; INVOLVED IN: carotenoid biosynthetic process, xanthophyll biosynthetic process, photosynthesis, light harvesting, carotene biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lycopene beta and epsilon cyclase (InterPro:IPR008671), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Lycopene cyclase, beta and epsilon (InterPro:IPR010108); BEST Arabidopsis thaliana protein match is: LYC (LYCOPENE CYCLASE); lycopene beta cyclase (TAIR:AT3G10230.1); Has 938 Blast hits to 935 proteins in 115 species: Archae - 2; Bacteria - 139; Metazoa - 0; Fungi - 0; Plants - 257; Viruses - 0; Other Eukaryotes - 540 (source: NCBI BLink).  protein_id AT5G57030.1p  transcript_id AT5G57030.1  protein_id AT5G57030.1p  transcript_id AT5G57030.1  
At5g57035	chr5:023080743	0.0	W/23080743-23080956,23081039-23081160,23081250-23081365,23081451-23081566,23081673-23081977,23082059-23082160,23082261-23082689,23082774-23083523,23083604-23083819	AT5G57035.1  CDS  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ ubiquitin-protein ligase  note ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ ubiquitin-protein ligase; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), U box (InterPro:IPR003613), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G19410.1); Has 84786 Blast hits to 83878 proteins in 3195 species: Archae - 70; Bacteria - 7795; Metazoa - 36785; Fungi - 6568; Plants - 19019; Viruses - 310; Other Eukaryotes - 14239 (source: NCBI BLink).  protein_id AT5G57035.1p  transcript_id AT5G57035.1  protein_id AT5G57035.1p  transcript_id AT5G57035.1  
At5g57040	chr5:023085066	0.0	C/23085066-23085116,23084636-23084801,23084215-23084502,23084035-23084123	AT5G57040.1  CDS  gene_syn MHM17.18, MHM17_18  go_component chloroplast|GO:0009507|18431481|IDA  go_process metabolic process|GO:0008152||ISS  go_function catalytic activity|GO:0003824||ISS  product lactoylglutathione lyase family protein / glyoxalase I family protein  note lactoylglutathione lyase family protein / glyoxalase I family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: lactoylglutathione lyase family protein / glyoxalase I family protein (TAIR:AT1G80160.1); Has 744 Blast hits to 744 proteins in 277 species: Archae - 0; Bacteria - 578; Metazoa - 2; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT5G57040.1p  transcript_id AT5G57040.1  protein_id AT5G57040.1p  transcript_id AT5G57040.1  
At5g57050	chr5:023087720	0.0	W/23087720-23087801,23087922-23088232,23088315-23088611,23088758-23088863,23088948-23089303	AT5G57050.2  CDS  gene_syn ABA INSENSITIVE 2, ABI2, MHM17.19, MHM17_19, PROTEIN PHOSPHATASE 2C  gene ABI2  function Encodes a protein phosphatase 2C and is involved in ABA signal transduction. Binds fibrillin preprotein in vitro and in vivo.  go_component protein serine/threonine phosphatase complex|GO:0008287|9869399|TAS  go_process protein amino acid dephosphorylation|GO:0006470|9869399|TAS  go_process response to osmotic stress|GO:0006970|11779861|IMP  go_process response to heat|GO:0009408|15923322|IMP  go_process response to water deprivation|GO:0009414|15599761|IMP  go_process response to abscisic acid stimulus|GO:0009737|11208021|IMP  go_process negative regulation of abscisic acid mediated signaling|GO:0009788|11208021|IGI  go_process photoinhibition|GO:0010205|16571665|IMP  go_function protein serine/threonine phosphatase activity|GO:0004722|9165752|IDA  go_function protein serine/threonine phosphatase activity|GO:0004722|9165752|IGI  go_function protein serine/threonine phosphatase activity|GO:0004722|9468303|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product ABI2 (ABA INSENSITIVE 2); protein serine/threonine phosphatase  note ABA INSENSITIVE 2 (ABI2); FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: in 7 processes; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: stem, leaf whorl, inflorescence meristem, sepal, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: ABI1 (ABA INSENSITIVE 1); calcium ion binding / protein serine/threonine phosphatase (TAIR:AT4G26080.1); Has 4486 Blast hits to 4387 proteins in 278 species: Archae - 0; Bacteria - 108; Metazoa - 1497; Fungi - 527; Plants - 1337; Viruses - 7; Other Eukaryotes - 1010 (source: NCBI BLink).  protein_id AT5G57050.2p  transcript_id AT5G57050.2  protein_id AT5G57050.2p  transcript_id AT5G57050.2  
At5g57050	chr5:023087720	0.0	W/23087720-23088232,23088315-23088611,23088758-23088863,23088948-23089303	AT5G57050.1  CDS  gene_syn ABA INSENSITIVE 2, ABI2, MHM17.19, MHM17_19, PROTEIN PHOSPHATASE 2C  gene ABI2  function Encodes a protein phosphatase 2C and is involved in ABA signal transduction. Binds fibrillin preprotein in vitro and in vivo.  go_component protein serine/threonine phosphatase complex|GO:0008287|9869399|TAS  go_process protein amino acid dephosphorylation|GO:0006470|9869399|TAS  go_process response to osmotic stress|GO:0006970|11779861|IMP  go_process response to heat|GO:0009408|15923322|IMP  go_process response to water deprivation|GO:0009414|15599761|IMP  go_process response to abscisic acid stimulus|GO:0009737|11208021|IMP  go_process negative regulation of abscisic acid mediated signaling|GO:0009788|11208021|IGI  go_process photoinhibition|GO:0010205|16571665|IMP  go_function protein serine/threonine phosphatase activity|GO:0004722|9165752|IDA  go_function protein serine/threonine phosphatase activity|GO:0004722|9165752|IGI  go_function protein serine/threonine phosphatase activity|GO:0004722|9468303|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product ABI2 (ABA INSENSITIVE 2); protein serine/threonine phosphatase  note ABA INSENSITIVE 2 (ABI2); FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: in 7 processes; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: stem, leaf whorl, inflorescence meristem, sepal, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C, N-terminal (InterPro:IPR014045), Protein phosphatase 2C (InterPro:IPR015655); BEST Arabidopsis thaliana protein match is: ABI1 (ABA INSENSITIVE 1); calcium ion binding / protein serine/threonine phosphatase (TAIR:AT4G26080.1); Has 4470 Blast hits to 4371 proteins in 278 species: Archae - 0; Bacteria - 108; Metazoa - 1495; Fungi - 521; Plants - 1330; Viruses - 7; Other Eukaryotes - 1009 (source: NCBI BLink).  protein_id AT5G57050.1p  transcript_id AT5G57050.1  protein_id AT5G57050.1p  transcript_id AT5G57050.1  
At5g57060	chr5:023090666	0.0	W/23090666-23090675,23091001-23091108,23091299-23091413,23091495-23091612,23091734-23091796	AT5G57060.1  CDS  gene_syn MHM17.20, MHM17_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26060.1); Has 58 Blast hits to 58 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G57060.1p  transcript_id AT5G57060.1  protein_id AT5G57060.1p  transcript_id AT5G57060.1  
At5g57060	chr5:023091072	0.0	W/23091072-23091108,23091299-23091413,23091495-23091612,23091734-23091796	AT5G57060.2  CDS  gene_syn MHM17.20, MHM17_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26060.1); Has 58 Blast hits to 58 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G57060.2p  transcript_id AT5G57060.2  protein_id AT5G57060.2p  transcript_id AT5G57060.2  
At5g57070	chr5:023096221	0.0	W/23096221-23097948	AT5G57070.1  CDS  gene_syn MUL3.1, MUL3_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, 4 leaf senescence stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G72790.1); Has 40764 Blast hits to 20744 proteins in 931 species: Archae - 87; Bacteria - 3708; Metazoa - 18338; Fungi - 5555; Plants - 6701; Viruses - 1377; Other Eukaryotes - 4998 (source: NCBI BLink).  protein_id AT5G57070.1p  transcript_id AT5G57070.1  protein_id AT5G57070.1p  transcript_id AT5G57070.1  
At5g57080	chr5:023098959	0.0	W/23098959-23099084,23099306-23099368	AT5G57080.1  CDS  gene_syn MUL3.2, MUL3_2  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26055.1); Has 9 Blast hits to 9 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G57080.1p  transcript_id AT5G57080.1  protein_id AT5G57080.1p  transcript_id AT5G57080.1  
At5g57090	chr5:023100765	0.0	W/23100765-23101034,23101283-23101585,23101966-23102410,23102808-23103077,23103376-23103643,23103731-23103816,23103892-23104049,23104173-23104249,23104390-23104456	AT5G57090.1  CDS  gene_syn AGR, AGR1, AGRAVITROPIC ROOT, AGRAVITROPIC ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, ATPIN2, AUXIN TRANSPORT PROTEIN EIR1, EIR1, ETHYLENE INSENSITIVE ROOT 1, MUL3.3, MUL3_3, PIN-FORMED 2, PIN2, POLAR-AUXIN-TRANSPORT EFFLUX COMPONENT AGRAVITROPIC 1, WAV6, WAVY ROOTS 6  gene EIR1  function Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of PIN2 polarity.  go_component lytic vacuole|GO:0000323|19004783|IDA  go_component plasma membrane|GO:0005886|19004783|IDA  go_component basal plasma membrane|GO:0009925|9843496|IDA  go_process response to ethylene stimulus|GO:0009723|9679062|IMP  go_process response to auxin stimulus|GO:0009733|9843496|IMP  go_process auxin polar transport|GO:0009926|16601150|IMP  go_process auxin polar transport|GO:0009926||ISS  go_process positive gravitropism|GO:0009958|9843496|IMP  go_function transporter activity|GO:0005215||ISS  go_function auxin:hydrogen symporter activity|GO:0009672||ISS  go_function auxin efflux transmembrane transporter activity|GO:0010329|9844024|IDA  product EIR1 (ETHYLENE INSENSITIVE ROOT 1); auxin efflux transmembrane transporter/ auxin:hydrogen symporter/ transporter  note ETHYLENE INSENSITIVE ROOT 1 (EIR1); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity, auxin efflux transmembrane transporter activity; INVOLVED IN: response to ethylene stimulus, response to auxin stimulus, positive gravitropism, auxin polar transport; LOCATED IN: lytic vacuole, plasma membrane, basal plasma membrane; EXPRESSED IN: primary root apical meristem, root tip, root hair, root; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: PIN1 (PIN-FORMED 1); transporter (TAIR:AT1G73590.1); Has 1075 Blast hits to 980 proteins in 276 species: Archae - 21; Bacteria - 424; Metazoa - 122; Fungi - 23; Plants - 272; Viruses - 0; Other Eukaryotes - 213 (source: NCBI BLink).  protein_id AT5G57090.1p  transcript_id AT5G57090.1  protein_id AT5G57090.1p  transcript_id AT5G57090.1  
At5g57100	chr5:023108350	0.0	C/23108350-23108440,23107995-23108155,23107688-23107896,23107500-23107593,23107217-23107383,23106948-23107118,23106563-23106842	AT5G57100.1  CDS  gene_syn MUL3.4, MUL3_4  go_component membrane|GO:0016020|11152613|ISS  product transporter-related  note transporter-related; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: transporter-related (TAIR:AT5G55950.1); Has 1445 Blast hits to 1442 proteins in 171 species: Archae - 0; Bacteria - 6; Metazoa - 447; Fungi - 255; Plants - 558; Viruses - 0; Other Eukaryotes - 179 (source: NCBI BLink).  protein_id AT5G57100.1p  transcript_id AT5G57100.1  protein_id AT5G57100.1p  transcript_id AT5G57100.1  
At5g57110	chr5:023116714	0.0	C/23116714-23116857,23116495-23116611,23116373-23116409,23116143-23116258,23115920-23116051,23115732-23115821,23115542-23115611,23115349-23115419,23115173-23115256,23115018-23115095,23114850-23114924,23114660-23114743,23114501-23114583,23114277-23114385,23114118-23114173,23113971-23114013,23113781-23113864,23113554-23113679,23113375-23113440,23113198-23113296,23112901-23113011,23112586-23112753,23112306-23112365,23112019-23112183,23111685-23111801,23111439-23111537,23111101-23111238,23110903-23111003,23110755-23110800,23110536-23110670,23110344-23110451,23110158-23110249,23109929-23110038,23109729-23109739	AT5G57110.1  CDS  gene_syn AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8, ACA8, AT-ACA8, AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8, MUL3.5, MUL3_5  gene ACA8  function Arabidopsis-autoinhibited Ca2+ -ATPase, isoform 8, contains all of the characteristic motifs of Ca2+ -transporting P-type Ca2+ -ATPases and is localized to the plasma membrane.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component plasma membrane|GO:0005886|10938365|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_process response to nematode|GO:0009624|16478044|IEP  go_function calcium-transporting ATPase activity|GO:0005388|10748247|ISS  go_function calcium-transporting ATPase activity|GO:0005388|12805592|ISS  go_function calcium-transporting ATPase activity|GO:0005388|14648121|IDA  go_function calcium-transporting ATPase activity|GO:0005388||ISS  go_function calmodulin binding|GO:0005516|11782485|TAS  go_function protein self-association|GO:0043621|15358533|IDA  product ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8); calcium-transporting ATPase/ calmodulin binding / protein self-association  note AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8 (ACA8); FUNCTIONS IN: protein self-association, calmodulin binding, calcium-transporting ATPase activity; INVOLVED IN: response to nematode; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, calcium-transporting, PMCA-type (InterPro:IPR006408), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: ACA10 (AUTOINHIBITED CA(2+)-ATPASE 10); calcium-transporting ATPase/ calmodulin binding (TAIR:AT4G29900.1); Has 25108 Blast hits to 19718 proteins in 1847 species: Archae - 520; Bacteria - 15194; Metazoa - 3371; Fungi - 1715; Plants - 1139; Viruses - 3; Other Eukaryotes - 3166 (source: NCBI BLink).  protein_id AT5G57110.1p  transcript_id AT5G57110.1  protein_id AT5G57110.1p  transcript_id AT5G57110.1  
At5g57110	chr5:023116714	0.0	C/23116714-23116857,23116495-23116611,23116373-23116409,23116143-23116258,23115920-23116051,23115732-23115821,23115542-23115611,23115349-23115419,23115173-23115256,23115018-23115095,23114850-23114924,23114660-23114743,23114501-23114583,23114277-23114385,23114118-23114173,23113971-23114013,23113781-23113864,23113554-23113679,23113375-23113440,23113198-23113296,23112901-23113011,23112586-23112753,23112306-23112365,23112019-23112183,23111685-23111801,23111439-23111537,23111101-23111238,23110903-23111003,23110755-23110800,23110536-23110670,23110344-23110451,23110158-23110249,23109929-23110038,23109729-23109739	AT5G57110.2  CDS  gene_syn AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8, ACA8, AT-ACA8, AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8, MUL3.5, MUL3_5  gene ACA8  function Arabidopsis-autoinhibited Ca2+ -ATPase, isoform 8, contains all of the characteristic motifs of Ca2+ -transporting P-type Ca2+ -ATPases and is localized to the plasma membrane.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component plasma membrane|GO:0005886|10938365|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_process response to nematode|GO:0009624|16478044|IEP  go_function calcium-transporting ATPase activity|GO:0005388|10748247|ISS  go_function calcium-transporting ATPase activity|GO:0005388|12805592|ISS  go_function calcium-transporting ATPase activity|GO:0005388|14648121|IDA  go_function calcium-transporting ATPase activity|GO:0005388||ISS  go_function calmodulin binding|GO:0005516|11782485|TAS  go_function protein self-association|GO:0043621|15358533|IDA  product ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8); calcium-transporting ATPase/ calmodulin binding / protein self-association  note AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8 (ACA8); FUNCTIONS IN: protein self-association, calmodulin binding, calcium-transporting ATPase activity; INVOLVED IN: response to nematode; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, calcium-transporting, PMCA-type (InterPro:IPR006408), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: ACA10 (AUTOINHIBITED CA(2+)-ATPASE 10); calcium-transporting ATPase/ calmodulin binding (TAIR:AT4G29900.1); Has 25108 Blast hits to 19718 proteins in 1847 species: Archae - 520; Bacteria - 15194; Metazoa - 3371; Fungi - 1715; Plants - 1139; Viruses - 3; Other Eukaryotes - 3166 (source: NCBI BLink).  protein_id AT5G57110.2p  transcript_id AT5G57110.2  protein_id AT5G57110.2p  transcript_id AT5G57110.2  
At5g57120	chr5:023124266	0.0	C/23124266-23124400,23124025-23124089,23123377-23123923,23123222-23123296,23123076-23123137,23122767-23122875	AT5G57120.1  CDS  gene_syn MUL3.6, MUL3_6  go_component nucleolus|GO:0005730|15496452|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif (InterPro:IPR006594), SRP40, C-terminal (InterPro:IPR007718); Has 90949 Blast hits to 45608 proteins in 1620 species: Archae - 300; Bacteria - 8281; Metazoa - 37603; Fungi - 8095; Plants - 3374; Viruses - 548; Other Eukaryotes - 32748 (source: NCBI BLink).  protein_id AT5G57120.1p  transcript_id AT5G57120.1  protein_id AT5G57120.1p  transcript_id AT5G57120.1  
At5g57123	chr5:023127215	0.0	C/23127215-23127418	AT5G57123.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29905.1); Has 41 Blast hits to 41 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G57123.1p  transcript_id AT5G57123.1  protein_id AT5G57123.1p  transcript_id AT5G57123.1  
At5g57126	chr5:023135525	0.0	C/23135525-23139406	AT5G57126.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 6.2e-282 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At5g57130	chr5:023145291	0.0	W/23145291-23145392,23145490-23146826,23147660-23147876,23147965-23149395	AT5G57130.1  CDS  gene_syn MUL3.8, MUL3_8  go_process protein metabolic process|GO:0019538||IEA  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: protein metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: heat shock protein-related (TAIR:AT4G29920.1); Has 152 Blast hits to 130 proteins in 22 species: Archae - 2; Bacteria - 6; Metazoa - 2; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G57130.1p  transcript_id AT5G57130.1  protein_id AT5G57130.1p  transcript_id AT5G57130.1  
At5g57140	chr5:023149926	0.0	W/23149926-23150111,23150192-23150339,23150419-23150831,23150924-23151370	AT5G57140.1  CDS  gene_syn ATPAP28, MUL3.9, MUL3_9, PAP28, PURPLE ACID PHOSPHATASE 28  gene PAP28  go_component endomembrane system|GO:0012505||IEA  go_function acid phosphatase activity|GO:0003993|16244908|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PAP28 (PURPLE ACID PHOSPHATASE 28); acid phosphatase/ protein serine/threonine phosphatase  note PURPLE ACID PHOSPHATASE 28 (PAP28); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Phosphoesterase At2g46880 (InterPro:IPR011230); BEST Arabidopsis thaliana protein match is: ATPAP29 (ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 29); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT5G63140.1); Has 326 Blast hits to 316 proteins in 101 species: Archae - 0; Bacteria - 110; Metazoa - 0; Fungi - 131; Plants - 63; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT5G57140.1p  transcript_id AT5G57140.1  protein_id AT5G57140.1p  transcript_id AT5G57140.1  
At5g57150	chr5:023152361	0.0	W/23152361-23152443,23152523-23152688,23152770-23152991,23153084-23153254,23154539-23154556	AT5G57150.3  CDS  gene_syn MUL3.10, MUL3_10  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT4G29930.3); Has 1566 Blast hits to 1566 proteins in 188 species: Archae - 0; Bacteria - 0; Metazoa - 199; Fungi - 0; Plants - 1344; Viruses - 9; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT5G57150.3p  transcript_id AT5G57150.3  protein_id AT5G57150.3p  transcript_id AT5G57150.3  
At5g57150	chr5:023152361	0.0	W/23152361-23152443,23152523-23152688,23152770-23152991,23153084-23153293	AT5G57150.2  CDS  gene_syn MUL3.10, MUL3_10  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT4G29930.3); Has 1571 Blast hits to 1571 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 199; Fungi - 0; Plants - 1349; Viruses - 9; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT5G57150.2p  transcript_id AT5G57150.2  protein_id AT5G57150.2p  transcript_id AT5G57150.2  
At5g57150	chr5:023152361	0.0	W/23152361-23152443,23152526-23152688,23152770-23152991,23153084-23153254,23154768-23154872	AT5G57150.1  CDS  gene_syn MUL3.10, MUL3_10  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT4G29930.1); Has 2083 Blast hits to 2083 proteins in 549 species: Archae - 0; Bacteria - 0; Metazoa - 686; Fungi - 0; Plants - 1363; Viruses - 20; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT5G57150.1p  transcript_id AT5G57150.1  protein_id AT5G57150.1p  transcript_id AT5G57150.1  
At5g57160	chr5:023161353	0.0	C/23161353-23161688,23161181-23161272,23161023-23161108,23160793-23160929,23160596-23160670,23160378-23160469,23160112-23160183,23159931-23160010,23159811-23159848,23159719-23159725,23159473-23159628,23159308-23159383,23158983-23159107,23158799-23158892,23158534-23158617,23158307-23158402,23158152-23158200,23157935-23158022,23157629-23157829,23157292-23157417,23157080-23157179,23156878-23156983,23156669-23156799,23156413-23156574,23156163-23156321,23155150-23156041	AT5G57160.1  CDS  gene_syn ATLIG4, DNA LIGASE IV, LIG4  gene ATLIG4  function Encodes the Arabidopsis orthologue of the yeast and mammalian DNA ligase IV. Involved in the repair of DNA damage but, unlike in yeast, not required for T-DNA integration. Interacts with the Arabidopsis homologue of XRCC4.  go_component intracellular|GO:0005622||IEA  go_process telomere maintenance|GO:0000723|17897968|IMP  go_process double-strand break repair|GO:0006302|19070688|IMP  go_process response to DNA damage stimulus|GO:0006974|12853643|IMP  go_process response to X-ray|GO:0010165|12853643|IMP  go_process DNA integration|GO:0015074|12853643|IMP  go_function DNA ligase (ATP) activity|GO:0003910|11029705|IDA  go_function protein binding|GO:0005515|11029705|IPI  product ATLIG4; DNA ligase (ATP)/ protein binding  note ATLIG4; FUNCTIONS IN: protein binding, DNA ligase (ATP) activity; INVOLVED IN: double-strand break repair, DNA integration, response to X-ray, telomere maintenance, response to DNA damage stimulus; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA ligase, N-terminal (InterPro:IPR012308), ATP dependent DNA ligase, central (InterPro:IPR012310), ATP dependent DNA ligase, C-terminal (InterPro:IPR012309), ATP-dependent DNA ligase, conserved site (InterPro:IPR016059), ATP-dependent DNA ligase (InterPro:IPR000977), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: ATP dependent DNA ligase family protein (TAIR:AT1G49250.1); Has 6152 Blast hits to 5184 proteins in 754 species: Archae - 203; Bacteria - 1144; Metazoa - 2109; Fungi - 699; Plants - 191; Viruses - 200; Other Eukaryotes - 1606 (source: NCBI BLink).  protein_id AT5G57160.1p  transcript_id AT5G57160.1  protein_id AT5G57160.1p  transcript_id AT5G57160.1  
At5g57170	chr5:023163030	0.0	C/23163030-23163140,23162465-23162665,23162201-23162236	AT5G57170.1  CDS  gene_syn MUL3.12, MUL3_12  go_component chloroplast|GO:0009507|18431481|IDA  go_process inflammatory response|GO:0006954||ISS  go_process response to other organism|GO:0051707||ISS  product macrophage migration inhibitory factor family protein / MIF family protein  note macrophage migration inhibitory factor family protein / MIF family protein; INVOLVED IN: inflammatory response, response to other organism; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tautomerase (InterPro:IPR014347), Macrophage migration inhibitory factor (InterPro:IPR001398); BEST Arabidopsis thaliana protein match is: macrophage migration inhibitory factor family protein / MIF family protein (TAIR:AT5G01650.1); Has 682 Blast hits to 682 proteins in 167 species: Archae - 0; Bacteria - 121; Metazoa - 337; Fungi - 8; Plants - 65; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).  protein_id AT5G57170.1p  transcript_id AT5G57170.1  protein_id AT5G57170.1p  transcript_id AT5G57170.1  
At5g57180	chr5:023168393	0.0	W/23168393-23169496,23170124-23170276,23170713-23170763	AT5G57180.2  CDS  gene_syn CHLOROPLAST IMPORT APPARATUS 2, CIA2, MUL3.13, MUL3_13  gene CIA2  function Transcription regulator responsible for specific upregulation of the translocon genes atToc33 and atToc75 in leaves. Involved in protein import into chloroplast.  go_component nucleus|GO:0005634|11549763|IDA  go_process protein targeting to chloroplast|GO:0045036|11549763|IMP  go_function transcription regulator activity|GO:0030528|11549763|IEP  product CIA2 (CHLOROPLAST IMPORT APPARATUS 2); transcription regulator  note CHLOROPLAST IMPORT APPARATUS 2 (CIA2); FUNCTIONS IN: transcription regulator activity; INVOLVED IN: protein targeting to chloroplast; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CIL (TAIR:AT4G25990.1); Has 1038 Blast hits to 1017 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 6; Plants - 958; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT5G57180.2p  transcript_id AT5G57180.2  protein_id AT5G57180.2p  transcript_id AT5G57180.2  
At5g57180	chr5:023168393	0.0	W/23168393-23169496,23170124-23170294	AT5G57180.1  CDS  gene_syn CHLOROPLAST IMPORT APPARATUS 2, CIA2, MUL3.13, MUL3_13  gene CIA2  function Transcription regulator responsible for specific upregulation of the translocon genes atToc33 and atToc75 in leaves. Involved in protein import into chloroplast.  go_component nucleus|GO:0005634|11549763|IDA  go_process protein targeting to chloroplast|GO:0045036|11549763|IMP  go_function transcription regulator activity|GO:0030528|11549763|IEP  product CIA2 (CHLOROPLAST IMPORT APPARATUS 2); transcription regulator  note CHLOROPLAST IMPORT APPARATUS 2 (CIA2); FUNCTIONS IN: transcription regulator activity; INVOLVED IN: protein targeting to chloroplast; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CIL (TAIR:AT4G25990.2); Has 798 Blast hits to 777 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 6; Plants - 747; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT5G57180.1p  transcript_id AT5G57180.1  protein_id AT5G57180.1p  transcript_id AT5G57180.1  
At5g57180	chr5:023168393	0.0	W/23168393-23169523	AT5G57180.3  CDS  gene_syn CHLOROPLAST IMPORT APPARATUS 2, CIA2, MUL3.13, MUL3_13  gene CIA2  function Transcription regulator responsible for specific upregulation of the translocon genes atToc33 and atToc75 in leaves. Involved in protein import into chloroplast.  go_component nucleus|GO:0005634|11549763|IDA  go_process protein targeting to chloroplast|GO:0045036|11549763|IMP  go_function transcription regulator activity|GO:0030528|11549763|IEP  product CIA2 (CHLOROPLAST IMPORT APPARATUS 2); transcription regulator  note CHLOROPLAST IMPORT APPARATUS 2 (CIA2); FUNCTIONS IN: transcription regulator activity; INVOLVED IN: protein targeting to chloroplast; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: CIL (TAIR:AT4G25990.2); Has 76 Blast hits to 55 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 6; Plants - 28; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT5G57180.3p  transcript_id AT5G57180.3  protein_id AT5G57180.3p  transcript_id AT5G57180.3  
At5g57181	chr5:023171062	0.0	W/23171062-23171160	AT5G57181.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G57181.1p  transcript_id AT5G57181.1  protein_id AT5G57181.1p  transcript_id AT5G57181.1  
At5g57190	chr5:023175182	0.0	C/23175182-23175364,23175006-23175085,23174887-23174911,23174734-23174793,23174574-23174642,23174382-23174471,23174253-23174303,23174045-23174128,23173859-23173950,23173594-23173749,23173433-23173517,23173213-23173324,23173039-23173139,23172910-23172957,23172648-23172794,23172418-23172513,23172257-23172331,23172061-23172153,23171888-23171974,23171768-23171818,23171531-23171653	AT5G57190.1  CDS  gene_syn MUL3.14, MUL3_14, PHOSPHATIDYLSERINE DECARBOXYLASE 2, PSD2, phosphatidylserine decarboxylase 2  gene PSD2  function Encodes the minor form of the two non-mitochondrail phosphatidylserine decarboxylase. The gene expression level is very low. Located at the tonoplast.  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process phospholipid biosynthetic process|GO:0008654||IEA  go_component plant-type vacuole membrane|GO:0009705|17449644|IDA  go_process phospholipid biosynthetic process|GO:0008654||ISS  go_function phosphatidylserine decarboxylase activity|GO:0004609|11461929|IDA  go_function phosphatidylserine decarboxylase activity|GO:0004609|11461929|IMP  go_function phosphatidylserine decarboxylase activity|GO:0004609||ISS  product PSD2 (phosphatidylserine decarboxylase 2); phosphatidylserine decarboxylase  note phosphatidylserine decarboxylase 2 (PSD2); FUNCTIONS IN: phosphatidylserine decarboxylase activity; INVOLVED IN: N-terminal protein myristoylation, phospholipid biosynthetic process; LOCATED IN: plant-type vacuole membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248), EF-HAND 2 (InterPro:IPR018249), Phosphatidylserine decarboxylase-related (InterPro:IPR003817), C2 calcium-dependent membrane targeting (InterPro:IPR000008), Phosphatidylserine decarboxylase (InterPro:IPR005221); BEST Arabidopsis thaliana protein match is: PSD3 (phosphatidylserine decarboxylase 3); phosphatidylserine decarboxylase (TAIR:AT4G25970.1); Has 2472 Blast hits to 2420 proteins in 831 species: Archae - 3; Bacteria - 1401; Metazoa - 228; Fungi - 335; Plants - 111; Viruses - 0; Other Eukaryotes - 394 (source: NCBI BLink).  protein_id AT5G57190.1p  transcript_id AT5G57190.1  protein_id AT5G57190.1p  transcript_id AT5G57190.1  
At5g57200	chr5:023177696	0.0	W/23177696-23177785,23177889-23177958,23178038-23178135,23178232-23178370,23178460-23178587,23178663-23178752,23178848-23178964,23179052-23179117,23179214-23179294,23179385-23179462,23179553-23179747,23179829-23179904,23179987-23180123,23180191-23180601	AT5G57200.1  CDS  gene_syn MJB24.1, MJB24_1  go_component clathrin coat|GO:0030118||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process clathrin coat assembly|GO:0048268||IEA  go_function phospholipid binding|GO:0005543||IEA  go_function phosphatidylinositol binding|GO:0005545||IEA  go_function clathrin binding|GO:0030276||IEA  go_function binding|GO:0005488||ISS  product epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related  note epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related; FUNCTIONS IN: phospholipid binding, clathrin binding, binding, phosphatidylinositol binding; INVOLVED IN: N-terminal protein myristoylation, clathrin coat assembly; LOCATED IN: clathrin coat; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942), Clathrin adaptor, phosphoinositide-binding, GAT-like (InterPro:IPR014712); BEST Arabidopsis thaliana protein match is: epsin N-terminal homology (ENTH) domain-containing protein (TAIR:AT4G25940.1); Has 16832 Blast hits to 6367 proteins in 386 species: Archae - 41; Bacteria - 379; Metazoa - 9309; Fungi - 837; Plants - 561; Viruses - 690; Other Eukaryotes - 5015 (source: NCBI BLink).  protein_id AT5G57200.1p  transcript_id AT5G57200.1  protein_id AT5G57200.1p  transcript_id AT5G57200.1  
At5g57210	chr5:023183509	0.0	C/23183509-23183705,23183275-23183378,23183000-23183176,23181308-23182920,23181088-23181210	AT5G57210.1  CDS  gene_syn MJB24.2, MJB24_2  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of Rab GTPase activity|GO:0032313||IEA  go_function RAB GTPase activator activity|GO:0005097||IEA  product microtubule-associated protein-related  note microtubule-associated protein-related; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular, chloroplast; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: microtubule-associated protein (TAIR:AT4G29950.1); Has 1303 Blast hits to 1018 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 627; Fungi - 236; Plants - 151; Viruses - 0; Other Eukaryotes - 289 (source: NCBI BLink).  protein_id AT5G57210.1p  transcript_id AT5G57210.1  protein_id AT5G57210.1p  transcript_id AT5G57210.1  
At5g57220	chr5:023187911	0.0	W/23187911-23188492,23188609-23188896,23189076-23189681	AT5G57220.1  CDS  gene_syn CYP81F2, MJB24.3, MJB24_3  gene CYP81F2  function member of CYP81F, involved in glucosinolate metabolism. Mutants had impaired resistance to fungi.  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process defense response to insect|GO:0002213|19293369|IMP  go_process indole glucosinolate biosynthetic process|GO:0009759|19095898|IMP  go_process glucosinolate metabolic process|GO:0019760|19095900|IMP  go_process indole glucosinolate metabolic process|GO:0042343|19293369|IMP  go_process defense response to bacterium|GO:0042742|19095898|IMP  go_process defense response to fungus|GO:0050832|19095900|IMP  go_process callose deposition in cell wall during defense response|GO:0052544|19095898|IMP  go_function oxygen binding|GO:0019825||ISS  product CYP81F2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP81F2; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: in 7 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP81F3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G37400.1); Has 25085 Blast hits to 24915 proteins in 1370 species: Archae - 46; Bacteria - 3116; Metazoa - 10449; Fungi - 4510; Plants - 5740; Viruses - 3; Other Eukaryotes - 1221 (source: NCBI BLink).  protein_id AT5G57220.1p  transcript_id AT5G57220.1  protein_id AT5G57220.1p  transcript_id AT5G57220.1  
At5g57230	chr5:023190572	0.0	W/23190572-23190627,23190709-23190828,23190901-23190979,23191065-23191151,23191252-23191314,23191408-23191485	AT5G57230.1  CDS  gene_syn MJB24.4, MJB24_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin-like fold (InterPro:IPR012336); Has 18 Blast hits to 18 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G57230.1p  transcript_id AT5G57230.1  protein_id AT5G57230.1p  transcript_id AT5G57230.1  
At5g57240	chr5:023193449	0.0	W/23193449-23193589,23193949-23194197,23194317-23194413,23194493-23194790,23194874-23194976,23195052-23195303	AT5G57240.1  CDS  gene_syn MJB24.5, MJB24_5, ORP4C, OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C  gene ORP4C  go_process steroid metabolic process|GO:0008202||IEA  go_component cellular_component|GO:0005575||ND  go_process steroid metabolic process|GO:0008202||ISS  go_function oxysterol binding|GO:0008142||ISS  product ORP4C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C); oxysterol binding  note OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C (ORP4C); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oxysterol-binding protein, conserved site (InterPro:IPR018494), Oxysterol-binding protein (InterPro:IPR000648); BEST Arabidopsis thaliana protein match is: ORP4B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4B); oxysterol binding (TAIR:AT4G25850.1); Has 1659 Blast hits to 1658 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 914; Fungi - 432; Plants - 123; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink).  protein_id AT5G57240.1p  transcript_id AT5G57240.1  protein_id AT5G57240.1p  transcript_id AT5G57240.1  
At5g57240	chr5:023193449	0.0	W/23193449-23193589,23193949-23194197,23194317-23194413,23194493-23194790,23194874-23194976,23195052-23195303	AT5G57240.2  CDS  gene_syn MJB24.5, MJB24_5, ORP4C, OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C  gene ORP4C  go_process steroid metabolic process|GO:0008202||IEA  go_component cellular_component|GO:0005575||ND  go_process steroid metabolic process|GO:0008202||ISS  go_function oxysterol binding|GO:0008142||ISS  product ORP4C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C); oxysterol binding  note OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C (ORP4C); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oxysterol-binding protein, conserved site (InterPro:IPR018494), Oxysterol-binding protein (InterPro:IPR000648); BEST Arabidopsis thaliana protein match is: ORP4B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4B); oxysterol binding (TAIR:AT4G25850.1); Has 1659 Blast hits to 1658 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 914; Fungi - 432; Plants - 123; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink).  protein_id AT5G57240.2p  transcript_id AT5G57240.2  protein_id AT5G57240.2p  transcript_id AT5G57240.2  
At5g57250	chr5:023195609	0.0	C/23195609-23198524	AT5G57250.1  CDS  gene_syn MJB24.6, MJB24_6  product unknown protein  note EXPRESSED IN: 9 plant structures; EXPRESSED DURING: F mature embryo stage, 4 leaf senescence stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G62910.1); Has 30133 Blast hits to 5951 proteins in 186 species: Archae - 6; Bacteria - 22; Metazoa - 601; Fungi - 543; Plants - 27743; Viruses - 0; Other Eukaryotes - 1218 (source: NCBI BLink).  protein_id AT5G57250.1p  transcript_id AT5G57250.1  protein_id AT5G57250.1p  transcript_id AT5G57250.1  
At5g57260	chr5:023199386	0.0	C/23199386-23200273,23198694-23199314	AT5G57260.1  CDS  gene_syn AT5G57250, CYP71B10, MJB24.7, MJB24_7  gene CYP71B10  function putative cytochrome P450  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71B10; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71B10; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP71B34; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G26300.1); Has 23046 Blast hits to 22871 proteins in 1223 species: Archae - 23; Bacteria - 1781; Metazoa - 10400; Fungi - 4323; Plants - 5753; Viruses - 3; Other Eukaryotes - 763 (source: NCBI BLink).  protein_id AT5G57260.1p  transcript_id AT5G57260.1  protein_id AT5G57260.1p  transcript_id AT5G57260.1  
At5g57270	chr5:023202746	0.0	C/23202746-23203105,23202463-23202662,23202298-23202369,23202107-23202197,23201896-23201976,23201615-23201677,23201409-23201531,23201208-23201246,23200984-23201121	AT5G57270.1  CDS  gene_syn MJB24.8, MJB24_8  product unknown protein  note unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF266, plant (InterPro:IPR004949); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25870.1); Has 336 Blast hits to 336 proteins in 14 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 306; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT5G57270.1p  transcript_id AT5G57270.1  protein_id AT5G57270.1p  transcript_id AT5G57270.1  
At5g57270	chr5:023202746	0.0	C/23202746-23203105,23202463-23202662,23202298-23202369,23202107-23202197,23201896-23201976,23201615-23201677,23201409-23201531,23201208-23201246,23200984-23201121	AT5G57270.2  CDS  gene_syn MJB24.8, MJB24_8  product unknown protein  note unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF266, plant (InterPro:IPR004949); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25870.1); Has 336 Blast hits to 336 proteins in 14 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 306; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT5G57270.2p  transcript_id AT5G57270.2  protein_id AT5G57270.2p  transcript_id AT5G57270.2  
At5g57270	chr5:023202746	0.0	C/23202746-23203105,23202463-23202662,23202298-23202369,23202107-23202197,23201896-23201976,23201615-23201677,23201409-23201531,23201208-23201246,23200984-23201121	AT5G57270.3  CDS  gene_syn MJB24.8, MJB24_8  product unknown protein  note unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF266, plant (InterPro:IPR004949); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25870.1); Has 336 Blast hits to 336 proteins in 14 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 306; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT5G57270.3p  transcript_id AT5G57270.3  protein_id AT5G57270.3p  transcript_id AT5G57270.3  
At5g57280	chr5:023204533	0.0	W/23204533-23204631,23204710-23204785,23205060-23205143,23205228-23205283,23205396-23205452,23205606-23205655,23205739-23205891,23206082-23206211,23206321-23206485	AT5G57280.1  CDS  gene_syn MJB24.9, MJB24_9  go_process metabolic process|GO:0008152||IEA  go_function methyltransferase activity|GO:0008168||IEA  product methyltransferase  note methyltransferase; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); Has 600 Blast hits to 588 proteins in 253 species: Archae - 10; Bacteria - 203; Metazoa - 120; Fungi - 93; Plants - 23; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).  protein_id AT5G57280.1p  transcript_id AT5G57280.1  protein_id AT5G57280.1p  transcript_id AT5G57280.1  
At5g57290	chr5:023207638	0.0	C/23207638-23207835,23207049-23207213	AT5G57290.1  CDS  gene_syn MJB24.10, MJB24_10  go_process translational elongation|GO:0006414||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic ribosome|GO:0022626|17934214|IDA  go_process translational elongation|GO:0006414||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S acidic ribosomal protein P3 (RPP3B)  note 60S acidic ribosomal protein P3 (RPP3B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosolic ribosome, ribosome, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P3 (RPP3A) (TAIR:AT4G25890.1); Has 940 Blast hits to 920 proteins in 179 species: Archae - 2; Bacteria - 26; Metazoa - 415; Fungi - 134; Plants - 243; Viruses - 4; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT5G57290.1p  transcript_id AT5G57290.1  protein_id AT5G57290.1p  transcript_id AT5G57290.1  
At5g57290	chr5:023207638	0.0	C/23207638-23207835,23207204-23207213,23207049-23207152	AT5G57290.2  CDS  gene_syn MJB24.10, MJB24_10  go_process translational elongation|GO:0006414||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic ribosome|GO:0022626|17934214|IDA  go_process translational elongation|GO:0006414||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S acidic ribosomal protein P3 (RPP3B)  note 60S acidic ribosomal protein P3 (RPP3B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosolic ribosome, ribosome, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P3 (RPP3A) (TAIR:AT4G25890.1); Has 62 Blast hits to 62 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT5G57290.2p  transcript_id AT5G57290.2  protein_id AT5G57290.2p  transcript_id AT5G57290.2  
At5g57290	chr5:023207641	0.0	C/23207641-23207835,23207049-23207213	AT5G57290.3  CDS  gene_syn MJB24.10, MJB24_10  go_process translational elongation|GO:0006414||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic ribosome|GO:0022626|17934214|IDA  go_process translational elongation|GO:0006414||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S acidic ribosomal protein P3 (RPP3B)  note 60S acidic ribosomal protein P3 (RPP3B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosolic ribosome, ribosome, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P3 (RPP3A) (TAIR:AT4G25890.1); Has 89 Blast hits to 89 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT5G57290.3p  transcript_id AT5G57290.3  protein_id AT5G57290.3p  transcript_id AT5G57290.3  
At5g57300	chr5:023210518	0.0	C/23210518-23210611,23210257-23210383,23210110-23210171,23209839-23209994,23209585-23209729,23209416-23209487,23209217-23209325,23208705-23208806	AT5G57300.1  CDS  gene_syn MJB24.11, MJB24_11  go_function methyltransferase activity|GO:0008168||IEA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  product UbiE/COQ5 methyltransferase family protein  note UbiE/COQ5 methyltransferase family protein; FUNCTIONS IN: methyltransferase activity; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UbiE/COQ5 methyltransferase (InterPro:IPR004033); BEST Arabidopsis thaliana protein match is: UbiE/COQ5 methyltransferase family protein (TAIR:AT1G23360.1); Has 6140 Blast hits to 6134 proteins in 1292 species: Archae - 70; Bacteria - 2991; Metazoa - 110; Fungi - 84; Plants - 108; Viruses - 0; Other Eukaryotes - 2777 (source: NCBI BLink).  protein_id AT5G57300.1p  transcript_id AT5G57300.1  protein_id AT5G57300.1p  transcript_id AT5G57300.1  
At5g57300	chr5:023210518	0.0	C/23210518-23210611,23210257-23210383,23210110-23210171,23209839-23209994,23209585-23209729,23209416-23209487,23209217-23209325,23208705-23208806	AT5G57300.2  CDS  gene_syn MJB24.11, MJB24_11  go_function methyltransferase activity|GO:0008168||IEA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  product UbiE/COQ5 methyltransferase family protein  note UbiE/COQ5 methyltransferase family protein; FUNCTIONS IN: methyltransferase activity; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UbiE/COQ5 methyltransferase (InterPro:IPR004033); BEST Arabidopsis thaliana protein match is: UbiE/COQ5 methyltransferase family protein (TAIR:AT1G23360.1); Has 6140 Blast hits to 6134 proteins in 1292 species: Archae - 70; Bacteria - 2991; Metazoa - 110; Fungi - 84; Plants - 108; Viruses - 0; Other Eukaryotes - 2777 (source: NCBI BLink).  protein_id AT5G57300.2p  transcript_id AT5G57300.2  protein_id AT5G57300.2p  transcript_id AT5G57300.2  
At5g57310	chr5:023211030	0.0	W/23211030-23211108,23211391-23211620	AT5G57310.1  CDS  gene_syn MJB24.12, MJB24_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G57310.1p  transcript_id AT5G57310.1  protein_id AT5G57310.1p  transcript_id AT5G57310.1  
At5g57320	chr5:023212690	0.0	W/23212690-23212745,23212850-23212949,23213041-23213109,23213201-23213437,23213527-23213704,23213788-23213920,23214020-23214182,23214273-23214420,23214514-23214620,23214720-23214875,23214966-23215034,23215116-23215184,23215269-23215406,23215493-23215621,23215721-23215868,23216003-23216013,23216124-23216264,23216351-23216476,23216566-23216631,23216713-23217055,23217163-23217350,23217436-23217549	AT5G57320.1  CDS  gene_syn MJB24.13, MJB24_13  go_process cytoskeleton organization|GO:0007010||IEA  go_function actin binding|GO:0003779||IEA  go_component cellular_component|GO:0005575||ND  go_process cytoskeleton organization|GO:0007010||ISS  go_function actin binding|GO:0003779||ISS  product villin, putative  note villin, putative; FUNCTIONS IN: actin binding; INVOLVED IN: cytoskeleton organization; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Gelsolin (InterPro:IPR007122), Villin headpiece (InterPro:IPR003128), Gelsolin region (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: VLN4 (ARABIDOPSIS THALIANA VILLIN 4); actin binding (TAIR:AT4G30160.1); Has 2654 Blast hits to 1672 proteins in 146 species: Archae - 0; Bacteria - 12; Metazoa - 1954; Fungi - 100; Plants - 129; Viruses - 0; Other Eukaryotes - 459 (source: NCBI BLink).  protein_id AT5G57320.1p  transcript_id AT5G57320.1  protein_id AT5G57320.1p  transcript_id AT5G57320.1  
At5g57330	chr5:023218392	0.0	W/23218392-23218484,23218884-23218958,23219412-23219468,23219549-23219709,23219828-23219968,23220067-23220169,23220272-23220371,23220456-23220664	AT5G57330.1  CDS  gene_syn MJB24.14, MJB24_14  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function isomerase activity|GO:0016853||IEA  go_function carbohydrate binding|GO:0030246||IEA  go_component cellular_component|GO:0005575||ND  go_process galactose metabolic process|GO:0006012||ISS  go_function aldose 1-epimerase activity|GO:0004034||ISS  product aldose 1-epimerase family protein  note aldose 1-epimerase family protein; FUNCTIONS IN: isomerase activity, carbohydrate binding, aldose 1-epimerase activity, catalytic activity; INVOLVED IN: galactose metabolic process, carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Aldose 1-epimerase (InterPro:IPR008183), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718); BEST Arabidopsis thaliana protein match is: aldose 1-epimerase family protein (TAIR:AT3G61610.1); Has 1232 Blast hits to 1231 proteins in 480 species: Archae - 0; Bacteria - 793; Metazoa - 38; Fungi - 84; Plants - 141; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).  protein_id AT5G57330.1p  transcript_id AT5G57330.1  protein_id AT5G57330.1p  transcript_id AT5G57330.1  
At5g57340	chr5:023228022	0.0	W/23228022-23228315,23228618-23229094	AT5G57340.2  CDS  gene_syn MJB24.15, MJB24_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; Has 2083 Blast hits to 1417 proteins in 67 species: Archae - 18; Bacteria - 35; Metazoa - 301; Fungi - 80; Plants - 75; Viruses - 0; Other Eukaryotes - 1574 (source: NCBI BLink).  protein_id AT5G57340.2p  transcript_id AT5G57340.2  protein_id AT5G57340.2p  transcript_id AT5G57340.2  
At5g57340	chr5:023228076	0.0	W/23228076-23228315,23228618-23229094	AT5G57340.1  CDS  gene_syn MJB24.15, MJB24_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; Has 2079 Blast hits to 1413 proteins in 67 species: Archae - 18; Bacteria - 35; Metazoa - 301; Fungi - 80; Plants - 75; Viruses - 0; Other Eukaryotes - 1570 (source: NCBI BLink).  protein_id AT5G57340.1p  transcript_id AT5G57340.1  protein_id AT5G57340.1p  transcript_id AT5G57340.1  
At5g57345	chr5:023230430	0.0	C/23230430-23230587,23230172-23230342,23229562-23229799	AT5G57345.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 64 Blast hits to 64 proteins in 25 species: Archae - 0; Bacteria - 27; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G57345.1p  transcript_id AT5G57345.1  protein_id AT5G57345.1p  transcript_id AT5G57345.1  
At5g57350	chr5:023236337	0.0	C/23236337-23236381,23235206-23235325,23234887-23235123,23233904-23234665,23233671-23233793,23233486-23233590,23233249-23233393,23233009-23233173,23232675-23232913,23232547-23232579,23232379-23232460,23232138-23232298,23231892-23232065,23231638-23231820,23231371-23231552,23231208-23231301	AT5G57350.1  CDS  gene_syn AHA3, ATAHA3, MJB24.16, MJB24_16, P-TYPE H(+)-ATPASE ISOFOM 3  gene AHA3  function member of Plasma membrane H+-ATPase family  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process ATP biosynthetic process|GO:0006754||IEA  go_process cation transport|GO:0006812||IEA  go_process metabolic process|GO:0008152||IEA  go_component plasma membrane|GO:0005886|8718619|IDA  go_function hydrogen-exporting ATPase activity, phosphorylative mechanism|GO:0008553||IDA  go_function ATPase activity|GO:0016887||ISS  product AHA3; ATPase/ hydrogen-exporting ATPase, phosphorylative mechanism  note AHA3; FUNCTIONS IN: ATPase activity, hydrogen-exporting ATPase activity, phosphorylative mechanism; INVOLVED IN: cation transport, metabolic process, ATP biosynthetic process; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type, plasma-membrane proton-efflux (InterPro:IPR006534), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: AHA2; ATPase/ hydrogen-exporting ATPase, phosphorylative mechanism (TAIR:AT4G30190.1); Has 21012 Blast hits to 18614 proteins in 1832 species: Archae - 407; Bacteria - 11552; Metazoa - 3366; Fungi - 1649; Plants - 1115; Viruses - 3; Other Eukaryotes - 2920 (source: NCBI BLink).  protein_id AT5G57350.1p  transcript_id AT5G57350.1  protein_id AT5G57350.1p  transcript_id AT5G57350.1  
At5g57360	chr5:023241597	0.0	W/23241597-23241841,23242672-23244215,23244324-23244415	AT5G57360.2  CDS  gene_syn ADO1, FKF1-LIKE PROTEIN 2, FKL2, LKP1, LOV KELCH PROTEIN 1, MSF19.2, MSF19_2, ZEITLUPE, ZTL  gene ZTL  function Encodes clock-associated PAS protein ZTL; Also known as FKF1-like protein 2 or ADAGIO1(ADO1). A protein containing a PAS domain ZTL contributes to the plant fitness (carbon fixation, biomass) by influencing the circadian clock period. ZTL is the F-box component of an SCF complex implicated in the degradation of TOC1.  go_component nucleus|GO:0005634|10998191|IDA  go_component nucleus|GO:0005634|10998191|TAS  go_component cytosol|GO:0005829|10998191|IDA  go_component SCF ubiquitin ligase complex|GO:0019005|15447654|IPI  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process circadian rhythm|GO:0007623|10847686|TAS  go_process circadian rhythm|GO:0007623|11260718|IMP  go_process circadian rhythm|GO:0007623|11260718|TAS  go_process circadian rhythm|GO:0007623||ISS  go_process flower development|GO:0009908|10998191|IMP  go_process response to red light|GO:0010114|16428597|IMP  go_process proteasomal protein catabolic process|GO:0010498|14654842|IMP  go_process SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|GO:0031146|14654842|IC  go_process regulation of circadian rhythm|GO:0042752|16428597|IMP  go_process entrainment of circadian clock by photoperiod|GO:0043153|10847686|IMP  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|11260718|IPI  product ZTL (ZEITLUPE); protein binding / ubiquitin-protein ligase  note ZEITLUPE (ZTL); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: in 8 processes; LOCATED IN: cytosol, SCF ubiquitin ligase complex, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), PAS (InterPro:IPR000014), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: LKP2 (LOV KELCH PROTEIN 2); protein binding / ubiquitin-protein ligase (TAIR:AT2G18915.2).  protein_id AT5G57360.2p  transcript_id AT5G57360.2  protein_id AT5G57360.2p  transcript_id AT5G57360.2  
At5g57360	chr5:023241597	0.0	W/23241597-23241841,23242672-23244256	AT5G57360.1  CDS  gene_syn ADO1, FKF1-LIKE PROTEIN 2, FKL2, LKP1, LOV KELCH PROTEIN 1, MSF19.2, MSF19_2, ZEITLUPE, ZTL  gene ZTL  function Encodes clock-associated PAS protein ZTL; Also known as FKF1-like protein 2 or ADAGIO1(ADO1). A protein containing a PAS domain ZTL contributes to the plant fitness (carbon fixation, biomass) by influencing the circadian clock period. ZTL is the F-box component of an SCF complex implicated in the degradation of TOC1.  go_component nucleus|GO:0005634|10998191|IDA  go_component nucleus|GO:0005634|10998191|TAS  go_component cytosol|GO:0005829|10998191|IDA  go_component SCF ubiquitin ligase complex|GO:0019005|15447654|IPI  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process circadian rhythm|GO:0007623|10847686|TAS  go_process circadian rhythm|GO:0007623|11260718|IMP  go_process circadian rhythm|GO:0007623|11260718|TAS  go_process circadian rhythm|GO:0007623||ISS  go_process flower development|GO:0009908|10998191|IMP  go_process response to red light|GO:0010114|16428597|IMP  go_process proteasomal protein catabolic process|GO:0010498|14654842|IMP  go_process SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|GO:0031146|14654842|IC  go_process regulation of circadian rhythm|GO:0042752|16428597|IMP  go_process entrainment of circadian clock by photoperiod|GO:0043153|10847686|IMP  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|11260718|IPI  product ZTL (ZEITLUPE); protein binding / ubiquitin-protein ligase  note ZEITLUPE (ZTL); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: in 8 processes; LOCATED IN: cytosol, SCF ubiquitin ligase complex, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), PAC motif (InterPro:IPR001610), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), PAS (InterPro:IPR000014), PAS-associated, C-terminal (InterPro:IPR000700), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: LKP2 (LOV KELCH PROTEIN 2); protein binding / ubiquitin-protein ligase (TAIR:AT2G18915.2); Has 5514 Blast hits to 3716 proteins in 507 species: Archae - 55; Bacteria - 1284; Metazoa - 1695; Fungi - 560; Plants - 958; Viruses - 0; Other Eukaryotes - 962 (source: NCBI BLink).  protein_id AT5G57360.1p  transcript_id AT5G57360.1  protein_id AT5G57360.1p  transcript_id AT5G57360.1  
At5g57370	chr5:023244811	0.0	W/23244811-23245470	AT5G57370.1  CDS  gene_syn MSF19.3, MSF19_3  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1777 (InterPro:IPR013957); Has 24491 Blast hits to 11458 proteins in 468 species: Archae - 12; Bacteria - 757; Metazoa - 14990; Fungi - 3198; Plants - 1639; Viruses - 88; Other Eukaryotes - 3807 (source: NCBI BLink).  protein_id AT5G57370.1p  transcript_id AT5G57370.1  protein_id AT5G57370.1p  transcript_id AT5G57370.1  
At5g57380	chr5:023249275	0.0	C/23249275-23249289,23248748-23248814,23247919-23248468,23247527-23247831,23246538-23247463	AT5G57380.1  CDS  gene_syn MSF19.4, MSF19_4, VERNALIZATION INSENSITIVE 3, VIN3  gene VIN3  function Encodes a plant homeodomain protein VERNALIZATION INSENSITIVE 3 (VIN3). In planta VIN3 and VRN2, VERNALIZATION 2, are part of a large protein complex that can include the polycomb group (PcG) proteins FERTILIZATION INDEPENDENT ENDOSPERM (FIE), CURLY LEAF (CLF), and SWINGER (SWN or EZA1). The complex has a role in establishing FLC (FLOWERING LOCUS C) repression during vernalization.  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process response to cold|GO:0009409|16983073|IEP  go_process vernalization response|GO:0010048|16983073|IEP  product VIN3 (VERNALIZATION INSENSITIVE 3); protein binding / zinc ion binding  note VERNALIZATION INSENSITIVE 3 (VIN3); FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: response to cold, vernalization response; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, root tip; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Fibronectin, type III-like fold (InterPro:IPR008957), Fibronectin, type III (InterPro:IPR003961); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30200.3); Has 147 Blast hits to 126 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 1; Plants - 144; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G57380.1p  transcript_id AT5G57380.1  protein_id AT5G57380.1p  transcript_id AT5G57380.1  
At5g57390	chr5:023256212	0.0	C/23256212-23256437,23255429-23255828,23255212-23255294,23254975-23254983,23254744-23254832,23254580-23254653,23254428-23254478,23254254-23254330,23253459-23254126	AT5G57390.1  CDS  gene_syn AIL5, AINTEGUMENTA-LIKE 5, CHO1, CHOTTO 1, MSF19.5, MSF19_5  gene AIL5  function Encodes a member of the AP2 family of transcriptional regulators.May be involved in germination and seedling growth. Mutants are resistant to ABA analogs and are resistant to high nitrogen concentrations.  go_component nucleus|GO:0005634|10948255|IC  go_process regulation of transcription, DNA-dependent|GO:0006355|8742706|TAS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process post-embryonic development|GO:0009791|19109301|IMP  go_process seed germination|GO:0009845|19109301|IMP  go_process organ morphogenesis|GO:0009887|8742707|ISS  go_process organ morphogenesis|GO:0009887|9636071|IMP  go_function DNA binding|GO:0003677|9192694|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|10948255|ISS  go_function transcription factor activity|GO:0003700|10948255|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AIL5 (AINTEGUMENTA-LIKE 5); DNA binding / transcription factor  note AINTEGUMENTA-LIKE 5 (AIL5); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: post-embryonic development, seed germination, organ morphogenesis, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: PLT1 (PLETHORA 1); transcription factor (TAIR:AT3G20840.1); Has 6982 Blast hits to 3911 proteins in 265 species: Archae - 0; Bacteria - 24; Metazoa - 850; Fungi - 80; Plants - 4575; Viruses - 6; Other Eukaryotes - 1447 (source: NCBI BLink).  protein_id AT5G57390.1p  transcript_id AT5G57390.1  protein_id AT5G57390.1p  transcript_id AT5G57390.1  
At5g57391	chr5:023257065	0.0	W/23257065-23257184	AT5G57391.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G57391.1p  transcript_id AT5G57391.1  protein_id AT5G57391.1p  transcript_id AT5G57391.1  
At5g57400	chr5:023262876	0.0	C/23262876-23263217,23262307-23262432	AT5G57400.1  CDS  gene_syn MSF19.6, MSF19_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G57400.1p  transcript_id AT5G57400.1  protein_id AT5G57400.1p  transcript_id AT5G57400.1  
At5g57410	chr5:023267299	0.0	C/23267299-23267349,23267128-23267225,23266859-23266955,23266693-23266782,23266535-23266597,23266379-23266453,23266239-23266304,23266085-23266162,23265892-23265996,23265724-23265801,23265512-23265631,23265326-23265369,23265219-23265246,23265102-23265110	AT5G57410.2  CDS  gene_syn MSF19.7, MSF19_7  go_process response to cadmium ion|GO:0046686|17075075|IEP  product unknown protein  note unknown protein; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G18876.1); Has 7730 Blast hits to 5816 proteins in 415 species: Archae - 32; Bacteria - 449; Metazoa - 4385; Fungi - 520; Plants - 200; Viruses - 9; Other Eukaryotes - 2135 (source: NCBI BLink).  protein_id AT5G57410.2p  transcript_id AT5G57410.2  protein_id AT5G57410.2p  transcript_id AT5G57410.2  
At5g57410	chr5:023267609	0.0	C/23267609-23267641,23267497-23267522,23267299-23267410,23267128-23267225,23266859-23266955,23266693-23266782,23266535-23266597,23266379-23266453,23266239-23266304,23266085-23266162,23265892-23265996,23265724-23265801,23265512-23265631,23265326-23265369,23265219-23265246,23265102-23265110	AT5G57410.1  CDS  gene_syn MSF19.7, MSF19_7  go_process response to cadmium ion|GO:0046686|17075075|IEP  product unknown protein  note unknown protein; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G18876.1); Has 7898 Blast hits to 5905 proteins in 419 species: Archae - 32; Bacteria - 461; Metazoa - 4492; Fungi - 530; Plants - 206; Viruses - 9; Other Eukaryotes - 2168 (source: NCBI BLink).  protein_id AT5G57410.1p  transcript_id AT5G57410.1  protein_id AT5G57410.1p  transcript_id AT5G57410.1  
At5g57420	chr5:023270024	0.0	W/23270024-23270460,23270881-23270959	AT5G57420.1  CDS  gene_syn IAA33, INDOLE-3-ACETIC ACID INDUCIBLE 33, MUA2.1, MUA2_1  gene IAA33  function Belongs to auxin inducible gene family.  go_component nucleus|GO:0005634||IEA  go_process response to auxin stimulus|GO:0009733|12036262|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product IAA33 (INDOLE-3-ACETIC ACID INDUCIBLE 33); transcription factor  note INDOLE-3-ACETIC ACID INDUCIBLE 33 (IAA33); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to auxin stimulus; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525); BEST Arabidopsis thaliana protein match is: IAA13; transcription factor (TAIR:AT2G33310.3); Has 605 Blast hits to 605 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 605; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G57420.1p  transcript_id AT5G57420.1  protein_id AT5G57420.1p  transcript_id AT5G57420.1  
At5g57440	chr5:023272822	0.0	C/23272822-23272900,23272324-23272548,23272154-23272214,23271904-23272051,23271724-23271803,23271518-23271647	AT5G57440.1  CDS  gene_syn GLYCEROL-3-PHOSPHATASE 2, GPP2, GS1, MUA2.2, MUA2_2  gene GS1  function a member of haloacid dehalogenase-like hydrolase family  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function hydrolase activity|GO:0016787||ISS  product GS1; catalytic/ hydrolase  note GS1; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: GPP1 (glycerol-3-phosphatase 1); catalytic/ hydrolase (TAIR:AT4G25840.1); Has 4263 Blast hits to 4238 proteins in 1001 species: Archae - 23; Bacteria - 3163; Metazoa - 260; Fungi - 184; Plants - 98; Viruses - 0; Other Eukaryotes - 535 (source: NCBI BLink).  protein_id AT5G57440.1p  transcript_id AT5G57440.1  protein_id AT5G57440.1p  transcript_id AT5G57440.1  
At5g57450	chr5:023274008	0.0	C/23274008-23274922	AT5G57450.1  CDS  gene_syn ATXRCC3, MUA2.3, MUA2_3, XRCC3  gene XRCC3  function Involved in homologous recombination and recombinational repair, mutants are sterile, hypersensitive to DNA crosslinking agents, show aberrant meiosis with extensive chromosome fragmentation  go_component cellular_component|GO:0005575||ND  go_process DNA repair|GO:0006281||ISS  go_process double-strand break repair|GO:0006302|14726957|IMP  go_process meiosis|GO:0007126|14726957|IMP  go_function damaged DNA binding|GO:0003684||ISS  go_function single-stranded DNA binding|GO:0003697|12139010|ISS  go_function protein binding|GO:0005515|12139010|IPI  go_function ATP binding|GO:0005524||ISS  product XRCC3; ATP binding / damaged DNA binding / protein binding / single-stranded DNA binding  note XRCC3; FUNCTIONS IN: damaged DNA binding, protein binding, single-stranded DNA binding, ATP binding; INVOLVED IN: meiosis, double-strand break repair, DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, flower; CONTAINS InterPro DOMAIN/s: DNA repair and recombination, RecA-like (InterPro:IPR016467), Rad51, C-terminal (InterPro:IPR013632), RecA bacterial DNA recombination (InterPro:IPR001553); BEST Arabidopsis thaliana protein match is: ATRAD51C; ATP binding / damaged DNA binding / protein binding / recombinase/ single-stranded DNA binding (TAIR:AT2G45280.1); Has 1799 Blast hits to 1793 proteins in 389 species: Archae - 292; Bacteria - 0; Metazoa - 603; Fungi - 309; Plants - 288; Viruses - 0; Other Eukaryotes - 307 (source: NCBI BLink).  protein_id AT5G57450.1p  transcript_id AT5G57450.1  protein_id AT5G57450.1p  transcript_id AT5G57450.1  
At5g57450	chr5:023274008	0.0	C/23274008-23274922	AT5G57450.2  CDS  gene_syn ATXRCC3, MUA2.3, MUA2_3, XRCC3  gene XRCC3  function Involved in homologous recombination and recombinational repair, mutants are sterile, hypersensitive to DNA crosslinking agents, show aberrant meiosis with extensive chromosome fragmentation  go_component cellular_component|GO:0005575||ND  go_process DNA repair|GO:0006281||ISS  go_process double-strand break repair|GO:0006302|14726957|IMP  go_process meiosis|GO:0007126|14726957|IMP  go_function damaged DNA binding|GO:0003684||ISS  go_function single-stranded DNA binding|GO:0003697|12139010|ISS  go_function protein binding|GO:0005515|12139010|IPI  go_function ATP binding|GO:0005524||ISS  product XRCC3; ATP binding / damaged DNA binding / protein binding / single-stranded DNA binding  note XRCC3; FUNCTIONS IN: damaged DNA binding, protein binding, single-stranded DNA binding, ATP binding; INVOLVED IN: meiosis, double-strand break repair, DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, flower; CONTAINS InterPro DOMAIN/s: DNA repair and recombination, RecA-like (InterPro:IPR016467), Rad51, C-terminal (InterPro:IPR013632), RecA bacterial DNA recombination (InterPro:IPR001553); BEST Arabidopsis thaliana protein match is: ATRAD51C; ATP binding / damaged DNA binding / protein binding / recombinase/ single-stranded DNA binding (TAIR:AT2G45280.1); Has 1799 Blast hits to 1793 proteins in 389 species: Archae - 292; Bacteria - 0; Metazoa - 603; Fungi - 309; Plants - 288; Viruses - 0; Other Eukaryotes - 307 (source: NCBI BLink).  protein_id AT5G57450.2p  transcript_id AT5G57450.2  protein_id AT5G57450.2p  transcript_id AT5G57450.2  
At5g57460	chr5:023275321	0.0	W/23275321-23277261	AT5G57460.1  CDS  gene_syn MUA2.4, MUA2_4  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 121 Blast hits to 121 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 2; Plants - 16; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G57460.1p  transcript_id AT5G57460.1  protein_id AT5G57460.1p  transcript_id AT5G57460.1  
At5g57480	chr5:023279406	0.0	C/23279406-23280968	AT5G57480.1  CDS  gene_syn MUA2.5, MUA2_5  go_component endomembrane system|GO:0012505||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATPase activity|GO:0016887||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT4G25835.1); Has 11984 Blast hits to 11200 proteins in 1578 species: Archae - 597; Bacteria - 3831; Metazoa - 1934; Fungi - 1397; Plants - 1045; Viruses - 22; Other Eukaryotes - 3158 (source: NCBI BLink).  protein_id AT5G57480.1p  transcript_id AT5G57480.1  protein_id AT5G57480.1p  transcript_id AT5G57480.1  
At5g57490	chr5:023285287	0.0	C/23285287-23285335,23285137-23285204,23284737-23284847,23284571-23284657,23284270-23284478,23283895-23284195	AT5G57490.1  CDS  gene_syn ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 4, ATVDAC4, MUA2.6, MUA2_6, VDAC4, VOLTAGE DEPENDENT ANION CHANNEL 4  gene VDAC4  function Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.  go_component mitochondrion|GO:0005739|15276431|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial outer membrane|GO:0005741||ISS  go_process anion transport|GO:0006820||ISS  go_process response to bacterium|GO:0009617|19326079|IEP  go_function voltage-gated anion channel activity|GO:0008308|19326079|IMP  go_function voltage-gated anion channel activity|GO:0008308||ISS  product VDAC4 (VOLTAGE DEPENDENT ANION CHANNEL 4); voltage-gated anion channel  note VOLTAGE DEPENDENT ANION CHANNEL 4 (VDAC4); FUNCTIONS IN: voltage-gated anion channel activity; INVOLVED IN: response to bacterium, anion transport; LOCATED IN: mitochondrial outer membrane, mitochondrion, plasma membrane, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Porin, eukaryotic type (InterPro:IPR001925); BEST Arabidopsis thaliana protein match is: VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2); voltage-gated anion channel (TAIR:AT5G67500.1); Has 658 Blast hits to 658 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 371; Fungi - 95; Plants - 179; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT5G57490.1p  transcript_id AT5G57490.1  protein_id AT5G57490.1p  transcript_id AT5G57490.1  
At5g57500	chr5:023287099	0.0	C/23287099-23287525,23286406-23286935	AT5G57500.1  CDS  gene_syn MUA2.7, MUA2_7  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process protein amino acid glycosylation|GO:0006486||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product transferase, transferring glycosyl groups  note transferase, transferring glycosyl groups; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: galactosyltransferase family protein (TAIR:AT3G06440.1); Has 343 Blast hits to 342 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 19; Plants - 147; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT5G57500.1p  transcript_id AT5G57500.1  protein_id AT5G57500.1p  transcript_id AT5G57500.1  
At5g57510	chr5:023289164	0.0	C/23289164-23289556	AT5G57510.1  CDS  gene_syn MUA2.8, MUA2_8  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 8 Blast hits to 8 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G57510.1p  transcript_id AT5G57510.1  protein_id AT5G57510.1p  transcript_id AT5G57510.1  
At5g57520	chr5:023296019	0.0	W/23296019-23296471	AT5G57520.1  CDS  gene_syn ATZFP2, MUA2.9, MUA2_9, ZFP2, ZINC FINGER PROTEIN 2  gene ZFP2  function Encodes a zinc finger protein containing only a single zinc finger.  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product ZFP2 (ZINC FINGER PROTEIN 2); nucleic acid binding / transcription factor/ zinc ion binding  note ZINC FINGER PROTEIN 2 (ZFP2); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: ZFP1 (ZINC-FINGER PROTEIN 1); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT1G80730.1); Has 384 Blast hits to 382 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 384; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G57520.1p  transcript_id AT5G57520.1  protein_id AT5G57520.1p  transcript_id AT5G57520.1  
At5g57530	chr5:023301277	0.0	C/23301277-23301549,23301002-23301195,23300469-23300859	AT5G57530.1  CDS  gene_syn MUA2.10, MUA2_10  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process cellular glucan metabolic process|GO:0006073||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762||IEA  go_component cell wall|GO:0005618|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative  note xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: cell wall, cytoplasm; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative (TAIR:AT5G57540.1); Has 1405 Blast hits to 1396 proteins in 212 species: Archae - 0; Bacteria - 192; Metazoa - 0; Fungi - 305; Plants - 808; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).  protein_id AT5G57530.1p  transcript_id AT5G57530.1  protein_id AT5G57530.1p  transcript_id AT5G57530.1  
At5g57535	chr5:023302415	0.0	C/23302415-23302549	AT5G57535.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G57535.1p  transcript_id AT5G57535.1  protein_id AT5G57535.1p  transcript_id AT5G57535.1  
At5g57540	chr5:023303780	0.0	C/23303780-23304049,23303502-23303695,23302996-23303386	AT5G57540.1  CDS  gene_syn MUA2.11, MUA2_11  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process cellular glucan metabolic process|GO:0006073||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762||IEA  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative  note xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, apoplast, cell wall; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16, active site (InterPro:IPR008263), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative (TAIR:AT5G57530.1); Has 1398 Blast hits to 1390 proteins in 211 species: Archae - 0; Bacteria - 192; Metazoa - 0; Fungi - 302; Plants - 807; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).  protein_id AT5G57540.1p  transcript_id AT5G57540.1  protein_id AT5G57540.1p  transcript_id AT5G57540.1  
At5g57550	chr5:023306103	0.0	C/23306103-23306384,23305654-23305847,23305055-23305433	AT5G57550.1  CDS  gene_syn MUA2.12, MUA2_12, XTR3, XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3  gene XTR3  function xyloglucan endotransglycosylase-related protein (XTR3)  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process plant-type cell wall biogenesis|GO:0009832|11673616|ISS  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762|11673616|ISS  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3); hydrolase, acting on glycosyl bonds / xyloglucan:xyloglucosyl transferase  note XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3 (XTR3); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: plant-type cell wall biogenesis; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6); hydrolase, acting on glycosyl bonds / hydrolase, hydrolyzing O-glycosyl compounds / xyloglucan:xyloglucosyl transferase (TAIR:AT4G25810.1); Has 1364 Blast hits to 1355 proteins in 207 species: Archae - 0; Bacteria - 174; Metazoa - 0; Fungi - 288; Plants - 810; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).  protein_id AT5G57550.1p  transcript_id AT5G57550.1  protein_id AT5G57550.1p  transcript_id AT5G57550.1  
At5g57560	chr5:023307975	0.0	C/23307975-23308235,23307296-23307889	AT5G57560.1  CDS  gene_syn MUA2.13, MUA2_13, TCH4, Touch 4, XTH22, XYLOGLUCAN ENDOTRANSGLYCOSYLASE  gene TCH4  function Encodes a cell wall-modifying enzyme, rapidly upregulated in response to environmental stimuli  go_component cell wall|GO:0005618|9414546|IDA  go_process response to heat|GO:0009408|2302732|IEP  go_process response to cold|GO:0009409|16214899|IEP  go_process response to cold|GO:0009409|8756505|IEP  go_process response to mechanical stimulus|GO:0009612|9414546|IEP  go_process plant-type cell wall organization|GO:0009664|9414546|TAS  go_process response to auxin stimulus|GO:0009733|7580251|IEP  go_process response to brassinosteroid stimulus|GO:0009741|7580251|IEP  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762|10406121|IDA  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product TCH4 (Touch 4); hydrolase, acting on glycosyl bonds / xyloglucan:xyloglucosyl transferase  note Touch 4 (TCH4); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: in 7 processes; LOCATED IN: cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6); hydrolase, acting on glycosyl bonds / hydrolase, hydrolyzing O-glycosyl compounds / xyloglucan:xyloglucosyl transferase (TAIR:AT4G25810.1); Has 1390 Blast hits to 1382 proteins in 211 species: Archae - 0; Bacteria - 188; Metazoa - 0; Fungi - 306; Plants - 808; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT5G57560.1p  transcript_id AT5G57560.1  protein_id AT5G57560.1p  transcript_id AT5G57560.1  
At5g57565	chr5:023310872	0.0	W/23310872-23311120,23311214-23311285,23311384-23311494	AT5G57565.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CIPK21 (CBL-interacting protein kinase 21); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G57630.1); Has 62478 Blast hits to 61901 proteins in 1636 species: Archae - 36; Bacteria - 6345; Metazoa - 26095; Fungi - 6865; Plants - 9680; Viruses - 184; Other Eukaryotes - 13273 (source: NCBI BLink).  protein_id AT5G57565.1p  transcript_id AT5G57565.1  protein_id AT5G57565.1p  transcript_id AT5G57565.1  
At5g57565	chr5:023310872	0.0	W/23310872-23311120,23311214-23311354	AT5G57565.2  CDS  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CIPK21 (CBL-interacting protein kinase 21); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G57630.1); Has 52975 Blast hits to 52487 proteins in 1556 species: Archae - 27; Bacteria - 5092; Metazoa - 23019; Fungi - 6244; Plants - 7036; Viruses - 162; Other Eukaryotes - 11395 (source: NCBI BLink).  protein_id AT5G57565.2p  transcript_id AT5G57565.2  protein_id AT5G57565.2p  transcript_id AT5G57565.2  
At5g57567	chr5:023312233	0.0	C/23312233-23312358	AT5G57567.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G57567.1p  transcript_id AT5G57567.1  protein_id AT5G57567.1p  transcript_id AT5G57567.1  
At5g57570	chr5:023313784	0.0	C/23313784-23314194	AT5G57570.1  CDS  gene_syn MUA2.15, MUA2_15  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: GCK (InterPro:IPR012891); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57640.1); Has 44 Blast hits to 44 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G57570.1p  transcript_id AT5G57570.1  protein_id AT5G57570.1p  transcript_id AT5G57570.1  
At5g57580	chr5:023317586	0.0	C/23317586-23317683,23317424-23317499,23317230-23317288,23316647-23317146,23316398-23316558,23316115-23316318,23315696-23315927,23314994-23315607	AT5G57580.1  CDS  gene_syn MUA2.16, MUA2_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516|11782485|IEP  go_function calmodulin binding|GO:0005516|11782485|TAS  product calmodulin-binding protein  note calmodulin-binding protein; FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Calmodulin binding protein-like (InterPro:IPR012416); BEST Arabidopsis thaliana protein match is: calmodulin-binding protein (TAIR:AT4G25800.2); Has 187 Blast hits to 178 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 187; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G57580.1p  transcript_id AT5G57580.1  protein_id AT5G57580.1p  transcript_id AT5G57580.1  
At5g57590	chr5:023321999	0.0	C/23321999-23322687,23321750-23321920,23321381-23321642,23321208-23321288,23320947-23321067,23320737-23320873,23320432-23320526,23320051-23320160,23319819-23319965,23319548-23319681,23319331-23319462,23319113-23319247,23318869-23318981,23318593-23318767	AT5G57590.1  CDS  gene_syn BIO1, MUA2.17, MUA2_17, biotin auxotroph 1  gene BIO1  function Mutant complemented by E coli Bio A gene encoding 7,8-diaminopelargonic acid aminotransferase.  go_process biotin biosynthetic process|GO:0009102|8676868|IGI  go_function adenosylmethionine-8-amino-7-oxononanoate transaminase activity|GO:0004015|8676868|IGI  product BIO1 (biotin auxotroph 1); adenosylmethionine-8-amino-7-oxononanoate transaminase  note biotin auxotroph 1 (BIO1); FUNCTIONS IN: adenosylmethionine-8-amino-7-oxononanoate transaminase activity; INVOLVED IN: biotin biosynthetic process; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase class-III (InterPro:IPR005814), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: WIN1 (HOPW1-1-INTERACTING 1); N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase/ catalytic/ pyridoxal phosphate binding / transaminase (TAIR:AT1G80600.1); Has 16214 Blast hits to 16165 proteins in 1493 species: Archae - 311; Bacteria - 10293; Metazoa - 228; Fungi - 406; Plants - 160; Viruses - 0; Other Eukaryotes - 4816 (source: NCBI BLink).  protein_id AT5G57590.1p  transcript_id AT5G57590.1  protein_id AT5G57590.1p  transcript_id AT5G57590.1  
At5g57610	chr5:023325307	0.0	W/23325307-23327523,23327615-23327719,23327816-23327968,23328063-23328226,23328313-23328460,23328548-23328670,23328750-23328837,23328933-23329099	AT5G57610.1  CDS  gene_syn MUA2.19, MUA2_19  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, protein kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G16270.1); Has 86884 Blast hits to 85752 proteins in 3358 species: Archae - 57; Bacteria - 7111; Metazoa - 39400; Fungi - 6801; Plants - 18284; Viruses - 418; Other Eukaryotes - 14813 (source: NCBI BLink).  protein_id AT5G57610.1p  transcript_id AT5G57610.1  protein_id AT5G57610.1p  transcript_id AT5G57610.1  
At5g57620	chr5:023334904	0.0	W/23334904-23335039,23335153-23335282,23335653-23336388	AT5G57620.1  CDS  gene_syn AtMYB36, MUA2.20, MUA2_20, MYB36, myb domain protein 36  gene MYB36  function Encodes a putative transcription factor (MYB36).  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB36 (myb domain protein 36); DNA binding / transcription factor  note myb domain protein 36 (MYB36); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB84 (MYB DOMAIN PROTEIN 84); DNA binding / transcription factor (TAIR:AT3G49690.1); Has 6501 Blast hits to 6004 proteins in 352 species: Archae - 0; Bacteria - 0; Metazoa - 710; Fungi - 299; Plants - 3782; Viruses - 3; Other Eukaryotes - 1707 (source: NCBI BLink).  protein_id AT5G57620.1p  transcript_id AT5G57620.1  protein_id AT5G57620.1p  transcript_id AT5G57620.1  
At5g57625	chr5:023337865	0.0	W/23337865-23338123,23338213-23338577	AT5G57625.1  CDS  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_component extracellular region|GO:0005576||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product allergen V5/Tpx-1-related family protein  note allergen V5/Tpx-1-related family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, extracellular region; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related, conserved site (InterPro:IPR018244), Allergen V5/Tpx-1 related (InterPro:IPR001283), Ves allergen (InterPro:IPR002413), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: allergen V5/Tpx-1-related family protein (TAIR:AT4G25790.1); Has 2243 Blast hits to 2154 proteins in 289 species: Archae - 0; Bacteria - 52; Metazoa - 1316; Fungi - 218; Plants - 603; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT5G57625.1p  transcript_id AT5G57625.1  protein_id AT5G57625.1p  transcript_id AT5G57625.1  
At5g57630	chr5:023342913	0.0	C/23342913-23343143,23342654-23342830,23342489-23342560,23342337-23342390,23342041-23342256,23341861-23341950,23341671-23341781,23341454-23341573,23341242-23341376,23341092-23341136	AT5G57630.1  CDS  gene_syn CBL-interacting protein kinase 21, CIPK21, MUA2.22, MUA2_22, SNF1-RELATED PROTEIN KINASE 3.4, SnRK3.4  gene CIPK21  function CBL-interacting protein kinase  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process signal transduction|GO:0007165||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product CIPK21 (CBL-interacting protein kinase 21); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note CBL-interacting protein kinase 21 (CIPK21); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: signal transduction, protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CIPK23 (CBL-INTERACTING PROTEIN KINASE 23); kinase/ protein binding / protein serine/threonine kinase (TAIR:AT1G30270.1); Has 96039 Blast hits to 94314 proteins in 2676 species: Archae - 83; Bacteria - 8653; Metazoa - 41165; Fungi - 8769; Plants - 18719; Viruses - 498; Other Eukaryotes - 18152 (source: NCBI BLink).  protein_id AT5G57630.1p  transcript_id AT5G57630.1  protein_id AT5G57630.1p  transcript_id AT5G57630.1  
At5g57640	chr5:023344766	0.0	W/23344766-23345446	AT5G57640.1  CDS  gene_syn MUA2.23, MUA2_23  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: GCK (InterPro:IPR012891); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57570.1); Has 321 Blast hits to 304 proteins in 72 species: Archae - 0; Bacteria - 9; Metazoa - 137; Fungi - 19; Plants - 43; Viruses - 15; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT5G57640.1p  transcript_id AT5G57640.1  protein_id AT5G57640.1p  transcript_id AT5G57640.1  
At5g57650	chr5:023346263	0.0	C/23346263-23346285,23345797-23345920	AT5G57650.1  CDS  gene_syn MUA2.24, MUA2_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product eukaryotic translation initiation factor-related  note eukaryotic translation initiation factor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, sperm cell, root; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G57650.1p  transcript_id AT5G57650.1  protein_id AT5G57650.1p  transcript_id AT5G57650.1  
At5g57655	chr5:023347030	0.0	W/23347030-23347089,23347194-23347298,23347407-23347481,23347593-23347722,23347807-23347898,23348116-23348169,23348373-23348658,23348736-23348969,23349055-23349125,23349223-23349263,23349353-23349452,23349531-23349680,23349770-23349805	AT5G57655.2  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function xylose isomerase activity|GO:0009045||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function xylose isomerase activity|GO:0009045||ISS  product xylose isomerase family protein  note xylose isomerase family protein; FUNCTIONS IN: xylose isomerase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xylose isomerase-like, TIM barrel (InterPro:IPR013022), Xylose isomerase, active site (InterPro:IPR018115), Xylose isomerase, bacterial type (InterPro:IPR013452), Xylose isomerase (InterPro:IPR001998), Xylose isomerase-type TIM barrel (InterPro:IPR012307); Has 1655 Blast hits to 1655 proteins in 456 species: Archae - 0; Bacteria - 1082; Metazoa - 9; Fungi - 2; Plants - 30; Viruses - 0; Other Eukaryotes - 532 (source: NCBI BLink).  protein_id AT5G57655.2p  transcript_id AT5G57655.2  protein_id AT5G57655.2p  transcript_id AT5G57655.2  
At5g57655	chr5:023347030	0.0	W/23347030-23347089,23347194-23347298,23347407-23347481,23347593-23347722,23347807-23347898,23348116-23348169,23348373-23348720	AT5G57655.1  CDS  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function xylose isomerase activity|GO:0009045||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function xylose isomerase activity|GO:0009045||ISS  product xylose isomerase family protein  note xylose isomerase family protein; FUNCTIONS IN: xylose isomerase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xylose isomerase-like, TIM barrel (InterPro:IPR013022), Xylose isomerase, active site (InterPro:IPR018115), Xylose isomerase (InterPro:IPR001998), Xylose isomerase-type TIM barrel (InterPro:IPR012307); Has 1507 Blast hits to 1507 proteins in 449 species: Archae - 0; Bacteria - 1062; Metazoa - 7; Fungi - 2; Plants - 29; Viruses - 0; Other Eukaryotes - 407 (source: NCBI BLink).  protein_id AT5G57655.1p  transcript_id AT5G57655.1  protein_id AT5G57655.1p  transcript_id AT5G57655.1  
At5g57660	chr5:023355573	0.0	W/23355573-23356304,23356394-23356729	AT5G57660.1  CDS  gene_syn MRI1.1, MRI1_1  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (B-box type) family protein  note zinc finger (B-box type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: zinc finger (B-box type) family protein (TAIR:AT5G24930.1); Has 1656 Blast hits to 1357 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1583; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT5G57660.1p  transcript_id AT5G57660.1  protein_id AT5G57660.1p  transcript_id AT5G57660.1  
At5g57670	chr5:023363553	0.0	C/23363553-23363694,23363337-23363455,23362749-23362867,23362537-23362658,23362146-23362451,23361810-23362064,23361539-23361696,23361246-23361461,23360784-23360933,23360531-23360683	AT5G57670.2  CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process response to stress|GO:0006950||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, response to stress; EXPRESSED IN: petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G18890.1); Has 81528 Blast hits to 80573 proteins in 2436 species: Archae - 49; Bacteria - 7572; Metazoa - 35626; Fungi - 6206; Plants - 18044; Viruses - 422; Other Eukaryotes - 13609 (source: NCBI BLink).  protein_id AT5G57670.2p  transcript_id AT5G57670.2  protein_id AT5G57670.2p  transcript_id AT5G57670.2  
At5g57685	chr5:023366356	0.0	C/23366356-23366802	AT5G57685.1  CDS  gene_syn Arabidopsis thaliana GLUTAMINE DUMPER 3, AtGDU3  gene AtGDU3  go_component integral to membrane|GO:0016021|15208395|RCA  go_process secretion by cell|GO:0032940|15208395|ISS  go_function molecular_function|GO:0003674||ND  product AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3)  note Arabidopsis thaliana GLUTAMINE DUMPER 3 (AtGDU3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: secretion by cell; LOCATED IN: integral to membrane; BEST Arabidopsis thaliana protein match is: AtGDU2 (Arabidopsis thaliana GLUTAMINE DUMPER 2) (TAIR:AT4G25760.1); Has 63 Blast hits to 63 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G57685.1p  transcript_id AT5G57685.1  protein_id AT5G57685.1p  transcript_id AT5G57685.1  
At5g57690	chr5:023373990	0.0	C/23373990-23374469,23373762-23373899,23373589-23373674,23373412-23373499,23373168-23373326,23373009-23373079,23372846-23372923,23372655-23372742,23372450-23372566,23372063-23372221	AT5G57690.1  CDS  gene_syn MRI1.5, MRI1_5  go_component chloroplast|GO:0009507||IEA  go_process activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|GO:0007205||IEA  go_function diacylglycerol kinase activity|GO:0004143||IEA  go_process activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|GO:0007205||ISS  go_function diacylglycerol kinase activity|GO:0004143||ISS  product diacylglycerol kinase  note diacylglycerol kinase; FUNCTIONS IN: diacylglycerol kinase activity; INVOLVED IN: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Diacylglycerol kinase, catalytic region (InterPro:IPR001206), Diacylglycerol kinase accessory region (InterPro:IPR000756), Diacylglycerol kinase, plant (InterPro:IPR016961); BEST Arabidopsis thaliana protein match is: diacylglycerol kinase, putative (TAIR:AT2G18730.1); Has 1222 Blast hits to 1064 proteins in 139 species: Archae - 0; Bacteria - 70; Metazoa - 880; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).  protein_id AT5G57690.1p  transcript_id AT5G57690.1  protein_id AT5G57690.1p  transcript_id AT5G57690.1  
At5g57700	chr5:023375170	0.0	W/23375170-23375172,23375290-23375385,23375472-23375558,23375636-23375763,23375846-23375942,23376050-23376127,23376210-23376435,23376515-23376738,23376836-23376943	AT5G57700.4  CDS  gene_syn MRI1.6, MRI1_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product BNR/Asp-box repeat family protein  note BNR/Asp-box repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Neuraminidase (InterPro:IPR011040).  protein_id AT5G57700.4p  transcript_id AT5G57700.4  protein_id AT5G57700.4p  transcript_id AT5G57700.4  
At5g57700	chr5:023375257	0.0	W/23375257-23375385,23375472-23375558,23375636-23375763,23375846-23375942,23376050-23376127,23376210-23376435,23376515-23376738,23376836-23376943	AT5G57700.3  CDS  gene_syn MRI1.6, MRI1_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product BNR/Asp-box repeat family protein  note BNR/Asp-box repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Neuraminidase (InterPro:IPR011040); Has 487 Blast hits to 486 proteins in 178 species: Archae - 4; Bacteria - 371; Metazoa - 0; Fungi - 14; Plants - 21; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT5G57700.3p  transcript_id AT5G57700.3  protein_id AT5G57700.3p  transcript_id AT5G57700.3  
At5g57700	chr5:023375275	0.0	W/23375275-23375385,23375472-23375558,23375636-23375763,23375846-23375942,23376050-23376127,23376210-23376435,23376515-23376738,23376836-23376943	AT5G57700.1  CDS  gene_syn MRI1.6, MRI1_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product BNR/Asp-box repeat family protein  note BNR/Asp-box repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Neuraminidase (InterPro:IPR011040); Has 487 Blast hits to 486 proteins in 178 species: Archae - 4; Bacteria - 371; Metazoa - 0; Fungi - 14; Plants - 21; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT5G57700.1p  transcript_id AT5G57700.1  protein_id AT5G57700.1p  transcript_id AT5G57700.1  
At5g57700	chr5:023375290	0.0	W/23375290-23375385,23375472-23375558,23375636-23375763,23375846-23375942,23376050-23376127,23376210-23376435,23376515-23376738,23376836-23376943	AT5G57700.2  CDS  gene_syn MRI1.6, MRI1_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product BNR/Asp-box repeat family protein  note BNR/Asp-box repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Neuraminidase (InterPro:IPR011040); Has 487 Blast hits to 486 proteins in 178 species: Archae - 4; Bacteria - 371; Metazoa - 0; Fungi - 14; Plants - 21; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT5G57700.2p  transcript_id AT5G57700.2  protein_id AT5G57700.2p  transcript_id AT5G57700.2  
At5g57710	chr5:023384794	0.0	W/23384794-23385974,23386066-23386276,23386377-23386676,23386772-23388052	AT5G57710.1  CDS  gene_syn MRI1.7, MRI1_7  go_process protein metabolic process|GO:0019538||IEA  go_function protein binding|GO:0005515||IEA  product heat shock protein-related  note heat shock protein-related; FUNCTIONS IN: protein binding; INVOLVED IN: protein metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: heat shock protein-related (TAIR:AT4G30350.1); Has 9872 Blast hits to 9053 proteins in 1515 species: Archae - 13; Bacteria - 7042; Metazoa - 21; Fungi - 216; Plants - 286; Viruses - 0; Other Eukaryotes - 2294 (source: NCBI BLink).  protein_id AT5G57710.1p  transcript_id AT5G57710.1  protein_id AT5G57710.1p  transcript_id AT5G57710.1  
At5g57720	chr5:023391449	0.0	C/23391449-23391526,23390440-23390905,23390250-23390368,23389927-23390166	AT5G57720.1  CDS  gene_syn MRI1.8, MRI1_8  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcriptional factor B3 family protein  note transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT3G06160.1); Has 145 Blast hits to 140 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 4; Plants - 134; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G57720.1p  transcript_id AT5G57720.1  protein_id AT5G57720.1p  transcript_id AT5G57720.1  
At5g57730	chr5:023393382	0.0	C/23393382-23393510	AT5G57730.1  CDS  gene_syn MRI1.9, MRI1_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G57730.1p  transcript_id AT5G57730.1  protein_id AT5G57730.1p  transcript_id AT5G57730.1  
At5g57735	chr5:023394005	0.0	W/23394005-23394500	AT5G57735.1  ncRNA  gene_syn TASIR-ARF  gene TASIR-ARF  function One of 3 loci encoding tasiR-ARF. A small interfering RNA that regulates the accumulation of ARF2,3 and 4.  go_process negative regulation of gene expression, epigenetic|GO:0045814|15851028|IDA  product TASIR-ARF; other RNA  note expressed protein, 150178  transcript_id AT5G57735.1  
At5g57740	chr5:023396951	0.0	C/23396951-23397145,23396791-23396850,23396637-23396708,23396371-23396537,23396119-23396279,23395949-23396007,23395812-23395858,23395568-23395717,23395388-23395479,23394789-23395312	AT5G57740.1  CDS  gene_syn MRI1.10, MRI1_10, XBAT32  gene XBAT32  function ubiquitin ligase  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product XBAT32; protein binding / zinc ion binding  note XBAT32; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT5G07270.1); Has 53432 Blast hits to 21435 proteins in 784 species: Archae - 43; Bacteria - 3620; Metazoa - 28006; Fungi - 3996; Plants - 1781; Viruses - 633; Other Eukaryotes - 15353 (source: NCBI BLink).  protein_id AT5G57740.1p  transcript_id AT5G57740.1  protein_id AT5G57740.1p  transcript_id AT5G57740.1  
At5g57747	chr5:023399103	0.0	W/23399103-23399219	AT5G57747.1  CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G57747.1p  transcript_id AT5G57747.1  protein_id AT5G57747.1p  transcript_id AT5G57747.1  
At5g57750	chr5:023399668	0.0	W/23399668-23400300	AT5G57750.1  CDS  gene_syn MRI1.11, MRI1_11  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G30400.1); Has 6395 Blast hits to 6378 proteins in 233 species: Archae - 0; Bacteria - 6; Metazoa - 2001; Fungi - 462; Plants - 2763; Viruses - 76; Other Eukaryotes - 1087 (source: NCBI BLink).  protein_id AT5G57750.1p  transcript_id AT5G57750.1  protein_id AT5G57750.1p  transcript_id AT5G57750.1  
At5g57760	chr5:023400725	0.0	W/23400725-23400961	AT5G57760.1  CDS  gene_syn MRI1.12, MRI1_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 8 growth stages; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G57760.1p  transcript_id AT5G57760.1  protein_id AT5G57760.1p  transcript_id AT5G57760.1  
At5g57770	chr5:023402903	0.0	C/23402903-23403112,23402743-23402820,23402214-23402442,23401928-23402134,23401682-23401852,23401555-23401604,23401426-23401474,23401094-23401329	AT5G57770.1  CDS  gene_syn MRI1.13, MRI1_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pleckstrin-like, plant (InterPro:IPR013666), Protein of unknown function DUF828, plant (InterPro:IPR008546); Has 104 Blast hits to 104 proteins in 9 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G57770.1p  transcript_id AT5G57770.1  protein_id AT5G57770.1p  transcript_id AT5G57770.1  
At5g57780	chr5:023405505	0.0	C/23405505-23406008	AT5G57780.1  CDS  gene_syn MTI20.1, MTI20_1  product unknown protein  note EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT4G30410.2); Has 70 Blast hits to 70 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G57780.1p  transcript_id AT5G57780.1  protein_id AT5G57780.1p  transcript_id AT5G57780.1  
At5g57785	chr5:023409105	0.0	C/23409105-23409326	AT5G57785.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G57785.1p  transcript_id AT5G57785.1  protein_id AT5G57785.1p  transcript_id AT5G57785.1  
At5g57790	chr5:023413229	0.0	C/23413229-23413442,23412993-23413130,23412596-23412894	AT5G57790.1  CDS  gene_syn MTI20.2, MTI20_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, embryo, petal, flower; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G57790.1p  transcript_id AT5G57790.1  protein_id AT5G57790.1p  transcript_id AT5G57790.1  
At5g57790	chr5:023413229	0.0	C/23413229-23413442,23412993-23413130,23412676-23412894,23412243-23412250	AT5G57790.2  CDS  gene_syn MTI20.2, MTI20_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, embryo, petal, flower; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G57790.2p  transcript_id AT5G57790.2  protein_id AT5G57790.2p  transcript_id AT5G57790.2  
At5g57800	chr5:023420589	0.0	W/23420589-23420639,23420733-23420956,23421079-23421326,23421416-23421635,23421949-23422076,23422336-23422592,23422695-23422802,23422905-23423111,23423215-23423325,23423413-23423586,23423662-23423832	AT5G57800.1  CDS  gene_syn CER3, ECERIFERUM 3, FACELESS POLLEN 1, FLP1, MTI20.3, MTI20_3, WAX2, YRE  gene CER3  function encodes a transmembrane protein with similarity to the sterol desaturase family at the N-terminus and to the short-chain dehydrogenase/reductase family at the C-terminus. Mutant analyses indicate this protein is involved in cuticle membrane and wax biosynthesis.  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component membrane|GO:0016020|12724542|ISS  go_process cuticle hydrocarbon biosynthetic process|GO:0006723|17624331|IMP  go_process response to salt stress|GO:0009651|11351099|IEP  go_process wax biosynthetic process|GO:0010025|12724542|IMP  go_process wax biosynthetic process|GO:0010025|17624331|IMP  go_process wax biosynthetic process|GO:0010025|8811860|IMP  go_process cuticle development|GO:0042335|12724542|IMP  go_process pollen sperm cell differentiation|GO:0048235|14756310|IMP  go_function catalytic activity|GO:0003824||ISS  product CER3 (ECERIFERUM 3); binding / catalytic/ iron ion binding / oxidoreductase  note ECERIFERUM 3 (CER3); FUNCTIONS IN: oxidoreductase activity, binding, iron ion binding, catalytic activity; INVOLVED IN: cuticle hydrocarbon biosynthetic process, response to salt stress, pollen sperm cell differentiation, wax biosynthetic process, cuticle development; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Fatty acid hydroxylase (InterPro:IPR006694), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: CER1 (ECERIFERUM 1); octadecanal decarbonylase (TAIR:AT1G02205.2); Has 564 Blast hits to 564 proteins in 154 species: Archae - 0; Bacteria - 199; Metazoa - 17; Fungi - 95; Plants - 183; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT5G57800.1p  transcript_id AT5G57800.1  protein_id AT5G57800.1p  transcript_id AT5G57800.1  
At5g57810	chr5:023424966	0.0	C/23424966-23425589,23424466-23424795	AT5G57810.1  CDS  gene_syn MTI20.4, MTI20_4, TET15, TETRASPANIN15  gene TET15  function Member of TETRASPANIN family  go_component integral to membrane|GO:0016021||IEA  go_process aging|GO:0007568||ISS  product TET15 (TETRASPANIN15)  note TETRASPANIN15 (TET15); INVOLVED IN: aging; LOCATED IN: integral to membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: TET14 (TETRASPANIN14) (TAIR:AT2G01960.1); Has 202 Blast hits to 202 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 202; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G57810.1p  transcript_id AT5G57810.1  protein_id AT5G57810.1p  transcript_id AT5G57810.1  
At5g57815	chr5:023426753	0.0	W/23426753-23426764,23427226-23427314,23427389-23427470,23427584-23427637	AT5G57815.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_function cytochrome-c oxidase activity|GO:0004129||IEA  go_component mitochondrion|GO:0005739||ISS  go_function cytochrome-c oxidase activity|GO:0004129||ISS  product cytochrome c oxidase subunit 6b, putative  note cytochrome c oxidase subunit 6b, putative; FUNCTIONS IN: cytochrome-c oxidase activity; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase, subunit VIb (InterPro:IPR003213); BEST Arabidopsis thaliana protein match is: cytochrome c oxidase subunit 6b, putative (TAIR:AT4G28060.1); Has 426 Blast hits to 426 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 243; Fungi - 77; Plants - 83; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT5G57815.1p  transcript_id AT5G57815.1  protein_id AT5G57815.1p  transcript_id AT5G57815.1  
At5g57820	chr5:023428601	0.0	W/23428601-23428859,23428939-23429165	AT5G57820.1  CDS  gene_syn MTI20.6, MTI20_6  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); Has 33 Blast hits to 33 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G57820.1p  transcript_id AT5G57820.1  protein_id AT5G57820.1p  transcript_id AT5G57820.1  
At5g57830	chr5:023430399	0.0	C/23430399-23430860,23429811-23430269,23429511-23429729,23429406-23429429	AT5G57830.1  CDS  gene_syn MTI20.7, MTI20_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30830.1); Has 600 Blast hits to 572 proteins in 96 species: Archae - 9; Bacteria - 15; Metazoa - 249; Fungi - 32; Plants - 195; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).  protein_id AT5G57830.1p  transcript_id AT5G57830.1  protein_id AT5G57830.1p  transcript_id AT5G57830.1  
At5g57840	chr5:023434933	0.0	C/23434933-23435161,23434530-23434708,23433617-23434022,23432945-23433462	AT5G57840.1  CDS  gene_syn MTI20.9, MTI20_9  function encodes a protein whose sequence is similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus (gi:2239091)  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function hydroxycinnamoyltransferase activity|GO:0050734||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: hydroxycinnamoyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, sepal, root, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HCT (HYDROXYCINNAMOYL-COA SHIKIMATE/QUINATE HYDROXYCINNAMOYL TRANSFERASE); quinate O-hydroxycinnamoyltransferase/ shikimate O-hydroxycinnamoyltransferase/ transferase (TAIR:AT5G48930.1); Has 1324 Blast hits to 1314 proteins in 103 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 36; Plants - 1286; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G57840.1p  transcript_id AT5G57840.1  protein_id AT5G57840.1p  transcript_id AT5G57840.1  
At5g57850	chr5:023437152	0.0	C/23437152-23437287,23436915-23436961,23436512-23436678,23435747-23436423,23435548-23435642	AT5G57850.1  CDS  gene_syn MTI20.10, MTI20_10  go_component chloroplast|GO:0009507|18431481|IDA  go_process tetrahydrofolate biosynthetic process|GO:0046654|15500462|IGI  go_function catalytic activity|GO:0003824||ISS  go_function 4-amino-4-deoxychorismate lyase activity|GO:0008696|15500462|IGI  product aminotransferase class IV family protein  note aminotransferase class IV family protein; FUNCTIONS IN: 4-amino-4-deoxychorismate lyase activity, catalytic activity; INVOLVED IN: tetrahydrofolate biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544); BEST Arabidopsis thaliana protein match is: aminotransferase class IV family protein (TAIR:AT3G05190.1); Has 5068 Blast hits to 5068 proteins in 953 species: Archae - 99; Bacteria - 2935; Metazoa - 0; Fungi - 34; Plants - 73; Viruses - 0; Other Eukaryotes - 1927 (source: NCBI BLink).  protein_id AT5G57850.1p  transcript_id AT5G57850.1  protein_id AT5G57850.1p  transcript_id AT5G57850.1  
At5g57860	chr5:023437991	0.0	W/23437991-23437993,23438274-23438459,23438606-23438645,23439029-23439087	AT5G57860.1  CDS  gene_syn MTI20.11, MTI20_11  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product ubiquitin family protein  note ubiquitin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); Has 64 Blast hits to 64 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 0; Plants - 24; Viruses - 14; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G57860.1p  transcript_id AT5G57860.1  protein_id AT5G57860.1p  transcript_id AT5G57860.1  
At5g57860	chr5:023437991	0.0	W/23437991-23437993,23438274-23438459,23438606-23438645,23439029-23439087	AT5G57860.2  CDS  gene_syn MTI20.11, MTI20_11  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product ubiquitin family protein  note ubiquitin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); Has 64 Blast hits to 64 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 0; Plants - 24; Viruses - 14; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G57860.2p  transcript_id AT5G57860.2  protein_id AT5G57860.2p  transcript_id AT5G57860.2  
At5g57860	chr5:023437991	0.0	W/23437991-23437993,23438274-23438459,23438606-23438645,23439029-23439087	AT5G57860.3  CDS  gene_syn MTI20.11, MTI20_11  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product ubiquitin family protein  note ubiquitin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); Has 64 Blast hits to 64 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 0; Plants - 24; Viruses - 14; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G57860.3p  transcript_id AT5G57860.3  protein_id AT5G57860.3p  transcript_id AT5G57860.3  
At5g57860	chr5:023437991	0.0	W/23437991-23437993,23438274-23438474	AT5G57860.4  CDS  gene_syn MTI20.11, MTI20_11  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product ubiquitin family protein  note ubiquitin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); Has 25 Blast hits to 25 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G57860.4p  transcript_id AT5G57860.4  protein_id AT5G57860.4p  transcript_id AT5G57860.4  
At5g57870	chr5:023439755	0.0	W/23439755-23439928,23440587-23440658,23440764-23440859,23440962-23441171,23441273-23441370,23441490-23441577,23441670-23442020,23442108-23442350,23442435-23443433	AT5G57870.2  CDS  gene_syn MTI20.13, MTI20_13  go_process RNA metabolic process|GO:0016070||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process translation|GO:0006412||ISS  go_process translational initiation|GO:0006413||ISS  go_function RNA binding|GO:0003723||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product eukaryotic translation initiation factor 4F, putative / eIF-4F, putative  note eukaryotic translation initiation factor 4F, putative / eIF-4F, putative; FUNCTIONS IN: protein binding, RNA binding, binding, translation initiation factor activity; INVOLVED IN: translational initiation, translation, RNA metabolic process; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891), Armadillo-type fold (InterPro:IPR016024), MIF4G-like, type 3 (InterPro:IPR003890), MIF4-like, type 1/2/3 (InterPro:IPR016021); BEST Arabidopsis thaliana protein match is: MIF4G domain-containing protein / MA3 domain-containing protein (TAIR:AT2G24050.1); Has 1656 Blast hits to 1406 proteins in 174 species: Archae - 0; Bacteria - 18; Metazoa - 1007; Fungi - 128; Plants - 289; Viruses - 0; Other Eukaryotes - 214 (source: NCBI BLink).  protein_id AT5G57870.2p  transcript_id AT5G57870.2  protein_id AT5G57870.2p  transcript_id AT5G57870.2  
At5g57870	chr5:023439755	0.0	W/23439755-23439928,23440587-23440658,23440764-23440871,23440962-23441171,23441273-23441370,23441490-23441577,23441670-23442020,23442108-23442350,23442435-23443433	AT5G57870.1  CDS  gene_syn MTI20.13, MTI20_13  go_process RNA metabolic process|GO:0016070||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process translation|GO:0006412||ISS  go_process translational initiation|GO:0006413||ISS  go_function RNA binding|GO:0003723||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product eukaryotic translation initiation factor 4F, putative / eIF-4F, putative  note eukaryotic translation initiation factor 4F, putative / eIF-4F, putative; FUNCTIONS IN: protein binding, RNA binding, binding, translation initiation factor activity; INVOLVED IN: translational initiation, translation, RNA metabolic process; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891), Armadillo-type fold (InterPro:IPR016024), MIF4G-like, type 3 (InterPro:IPR003890), MIF4-like, type 1/2/3 (InterPro:IPR016021); BEST Arabidopsis thaliana protein match is: MIF4G domain-containing protein / MA3 domain-containing protein (TAIR:AT2G24050.1); Has 1653 Blast hits to 1403 proteins in 174 species: Archae - 0; Bacteria - 18; Metazoa - 1007; Fungi - 126; Plants - 289; Viruses - 0; Other Eukaryotes - 213 (source: NCBI BLink).  protein_id AT5G57870.1p  transcript_id AT5G57870.1  protein_id AT5G57870.1p  transcript_id AT5G57870.1  
At5g57880	chr5:023443977	0.0	W/23443977-23444144,23444351-23444408,23444541-23444687,23444781-23444861,23445064-23445143,23445234-23445282,23445400-23445513,23445606-23445798,23445886-23445953,23446240-23446439	AT5G57880.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; Has 12 Blast hits to 9 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G57880.1p  transcript_id AT5G57880.1  protein_id AT5G57880.1p  transcript_id AT5G57880.1  
At5g57885	chr5:023445994	0.0	W/23445994-23446065	AT5G57885.1  tRNA  gene_syn 67879.TRNA-MET-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Met (anticodon: CAT)  transcript_id AT5G57885.1  
At5g57887	chr5:023446831	0.0	W/23446831-23447085	AT5G57887.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G57887.1p  transcript_id AT5G57887.1  protein_id AT5G57887.1p  transcript_id AT5G57887.1  
At5g57890	chr5:023449517	0.0	C/23449517-23449622,23449286-23449440,23448560-23448630,23448450-23448487,23448257-23448367,23448071-23448170,23447840-23447975,23447648-23447752	AT5G57890.1  CDS  gene_syn MTI20.15, MTI20_15  go_process tryptophan biosynthetic process|GO:0000162|8400875|TAS  go_process response to bacterium|GO:0009617|8400875|IEP  go_function anthranilate synthase activity|GO:0004049|8400875|IGI  product anthranilate synthase beta subunit, putative  note anthranilate synthase beta subunit, putative; FUNCTIONS IN: anthranilate synthase activity; INVOLVED IN: tryptophan biosynthetic process, response to bacterium; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), Glutamine amidotransferase of anthranilate synthase (InterPro:IPR006221), Carbamoyl phosphate synthase, GATase region (InterPro:IPR001317), Glutamine amidotransferase type 1 (InterPro:IPR017926), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); BEST Arabidopsis thaliana protein match is: ASB1 (ANTHRANILATE SYNTHASE BETA SUBUNIT 1); anthranilate synthase (TAIR:AT1G25220.1); Has 15723 Blast hits to 15723 proteins in 1941 species: Archae - 373; Bacteria - 8128; Metazoa - 416; Fungi - 439; Plants - 114; Viruses - 0; Other Eukaryotes - 6253 (source: NCBI BLink).  protein_id AT5G57890.1p  transcript_id AT5G57890.1  protein_id AT5G57890.1p  transcript_id AT5G57890.1  
At5g57900	chr5:023450587	0.0	C/23450587-23450915,23449916-23450489	AT5G57900.1  CDS  gene_syn MTI20.16, MTI20_16, SKIP1, SKP1 INTERACTING PARTNER 1  gene SKIP1  function F-box protein, interacts with SKP1/ASK1 subunit of SCF ubiquitin ligase in a glucose-dependent manner  go_component SCF ubiquitin ligase complex|GO:0019005|11387208|IDA  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515|11387208|IPI  product SKIP1 (SKP1 INTERACTING PARTNER 1); protein binding  note SKP1 INTERACTING PARTNER 1 (SKIP1); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: SCF ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: F-box family protein (FBL19) (TAIR:AT4G30640.1); Has 2339 Blast hits to 1359 proteins in 123 species: Archae - 0; Bacteria - 2; Metazoa - 1308; Fungi - 175; Plants - 722; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).  protein_id AT5G57900.1p  transcript_id AT5G57900.1  protein_id AT5G57900.1p  transcript_id AT5G57900.1  
At5g57910	chr5:023452353	0.0	C/23452353-23452463,23451885-23451955,23451549-23451783,23451259-23451465	AT5G57910.1  CDS  gene_syn MTI20.17, MTI20_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30630.1); Has 32 Blast hits to 32 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G57910.1p  transcript_id AT5G57910.1  protein_id AT5G57910.1p  transcript_id AT5G57910.1  
At5g57920	chr5:023453634	0.0	W/23453634-23453805,23453880-23454256	AT5G57920.1  CDS  gene_syn MTI20.18, MTI20_18  go_component endomembrane system|GO:0012505||IEA  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function copper ion binding|GO:0005507||ISS  product plastocyanin-like domain-containing protein  note plastocyanin-like domain-containing protein; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: plastocyanin-like domain-containing protein (TAIR:AT2G25060.1); Has 687 Blast hits to 680 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 687; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G57920.1p  transcript_id AT5G57920.1  protein_id AT5G57920.1p  transcript_id AT5G57920.1  
At5g57930	chr5:023454690	0.0	W/23454690-23454717,23454820-23454938,23455085-23455437,23455523-23456354	AT5G57930.2  CDS  gene_syn ACCUMULATION OF PHOTOSYSTEM ONE 2, APO2, MTI20.19, MTI20_19, emb1629, embryo defective 1629  gene APO2  function ACCUMULATION OF PHOTOSYSTEM ONE 2  go_component chloroplast|GO:0009507||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product APO2 (ACCUMULATION OF PHOTOSYSTEM ONE 2)  note ACCUMULATION OF PHOTOSYSTEM ONE 2 (APO2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF794, plant (InterPro:IPR008512); BEST Arabidopsis thaliana protein match is: APO3 (ACCUMULATION OF PHOTOSYSTEM ONE 3) (TAIR:AT5G61930.2); Has 79 Blast hits to 62 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G57930.2p  transcript_id AT5G57930.2  protein_id AT5G57930.2p  transcript_id AT5G57930.2  
At5g57930	chr5:023454690	0.0	W/23454690-23454717,23454829-23454938,23455085-23455437,23455523-23456354	AT5G57930.1  CDS  gene_syn ACCUMULATION OF PHOTOSYSTEM ONE 2, APO2, MTI20.19, MTI20_19, emb1629, embryo defective 1629  gene APO2  function ACCUMULATION OF PHOTOSYSTEM ONE 2  go_component chloroplast|GO:0009507||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product APO2 (ACCUMULATION OF PHOTOSYSTEM ONE 2)  note ACCUMULATION OF PHOTOSYSTEM ONE 2 (APO2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF794, plant (InterPro:IPR008512); BEST Arabidopsis thaliana protein match is: APO3 (ACCUMULATION OF PHOTOSYSTEM ONE 3) (TAIR:AT5G61930.2); Has 79 Blast hits to 62 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G57930.1p  transcript_id AT5G57930.1  protein_id AT5G57930.1p  transcript_id AT5G57930.1  
At5g57940	chr5:023457116	0.0	W/23457116-23457144,23457324-23457906,23458068-23458280,23458672-23458982,23459123-23459234,23459373-23459609,23459771-23460439	AT5G57940.1  CDS  gene_syn ATCNGC5, CNGC5, CYCLIC NUCLEOTIDE GATED CHANNEL 5, MTI20.20, MTI20_20  gene ATCNGC5  function member of Cyclic nucleotide gated channel family  go_component membrane|GO:0016020|17432890|IDA  go_process ion transport|GO:0006811||IEA  go_function potassium channel activity|GO:0005267||ISS  go_function calmodulin binding|GO:0005516|11782485|TAS  go_function cyclic nucleotide binding|GO:0030551||ISS  product ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5); calmodulin binding / cyclic nucleotide binding / potassium channel  note CYCLIC NUCLEOTIDE GATED CHANNEL 5 (ATCNGC5); FUNCTIONS IN: cyclic nucleotide binding, calmodulin binding, potassium channel activity; INVOLVED IN: ion transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: ATCNGC6; calmodulin binding (TAIR:AT2G23980.1); Has 2899 Blast hits to 2755 proteins in 221 species: Archae - 0; Bacteria - 47; Metazoa - 1306; Fungi - 32; Plants - 665; Viruses - 0; Other Eukaryotes - 849 (source: NCBI BLink).  protein_id AT5G57940.1p  transcript_id AT5G57940.1  protein_id AT5G57940.1p  transcript_id AT5G57940.1  
At5g57940	chr5:023457116	0.0	W/23457116-23457144,23457324-23457906,23458068-23458280,23458672-23458982,23459123-23459234,23459373-23459609,23459771-23460439	AT5G57940.2  CDS  gene_syn ATCNGC5, CNGC5, CYCLIC NUCLEOTIDE GATED CHANNEL 5, MTI20.20, MTI20_20  gene ATCNGC5  function member of Cyclic nucleotide gated channel family  go_component membrane|GO:0016020|17432890|IDA  go_process ion transport|GO:0006811||IEA  go_function potassium channel activity|GO:0005267||ISS  go_function calmodulin binding|GO:0005516|11782485|TAS  go_function cyclic nucleotide binding|GO:0030551||ISS  product ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5); calmodulin binding / cyclic nucleotide binding / potassium channel  note CYCLIC NUCLEOTIDE GATED CHANNEL 5 (ATCNGC5); FUNCTIONS IN: cyclic nucleotide binding, calmodulin binding, potassium channel activity; INVOLVED IN: ion transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: ATCNGC6; calmodulin binding (TAIR:AT2G23980.1); Has 2899 Blast hits to 2755 proteins in 221 species: Archae - 0; Bacteria - 47; Metazoa - 1306; Fungi - 32; Plants - 665; Viruses - 0; Other Eukaryotes - 849 (source: NCBI BLink).  protein_id AT5G57940.2p  transcript_id AT5G57940.2  protein_id AT5G57940.2p  transcript_id AT5G57940.2  
At5g57940	chr5:023457116	0.0	W/23457116-23457144,23457345-23457906,23458068-23458280,23458672-23458982,23459123-23459234,23459373-23459609,23459771-23460439	AT5G57940.3  CDS  gene_syn ATCNGC5, CNGC5, CYCLIC NUCLEOTIDE GATED CHANNEL 5, MTI20.20, MTI20_20  gene ATCNGC5  function member of Cyclic nucleotide gated channel family  go_component membrane|GO:0016020|17432890|IDA  go_process ion transport|GO:0006811||IEA  go_function potassium channel activity|GO:0005267||ISS  go_function calmodulin binding|GO:0005516|11782485|TAS  go_function cyclic nucleotide binding|GO:0030551||ISS  product ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5); calmodulin binding / cyclic nucleotide binding / potassium channel  note CYCLIC NUCLEOTIDE GATED CHANNEL 5 (ATCNGC5); FUNCTIONS IN: cyclic nucleotide binding, calmodulin binding, potassium channel activity; INVOLVED IN: ion transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: ATCNGC6; calmodulin binding (TAIR:AT2G23980.1); Has 2901 Blast hits to 2757 proteins in 221 species: Archae - 0; Bacteria - 47; Metazoa - 1308; Fungi - 32; Plants - 665; Viruses - 0; Other Eukaryotes - 849 (source: NCBI BLink).  protein_id AT5G57940.3p  transcript_id AT5G57940.3  protein_id AT5G57940.3p  transcript_id AT5G57940.3  
At5g57950	chr5:023460765	0.0	W/23460765-23460905,23460991-23461051,23461343-23461447,23461626-23461980,23462107-23462128	AT5G57950.1  CDS  gene_syn MTI20.21, MTI20_21  go_function protein binding|GO:0005515||IEA  go_component proteasome regulatory particle|GO:0005838||ISS  go_process intracellular signaling cascade|GO:0007242||ISS  product 26S proteasome regulatory subunit, putative  note 26S proteasome regulatory subunit, putative; FUNCTIONS IN: protein binding; INVOLVED IN: intracellular signaling cascade; LOCATED IN: proteasome regulatory particle; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PDZ/DHR/GLGF (InterPro:IPR001478); Has 352 Blast hits to 352 proteins in 164 species: Archae - 0; Bacteria - 46; Metazoa - 112; Fungi - 85; Plants - 23; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT5G57950.1p  transcript_id AT5G57950.1  protein_id AT5G57950.1p  transcript_id AT5G57950.1  
At5g57960	chr5:023466149	0.0	C/23466149-23466481,23465807-23465949,23465535-23465651,23465145-23465259,23464914-23465051,23464626-23464721,23464427-23464540,23464104-23464172,23463950-23464020,23463772-23463865,23463517-23463645,23463339-23463428,23463133-23463246	AT5G57960.1  CDS  gene_syn MTI20.22, MTI20_22  go_component chloroplast|GO:0009507|18431481|IDA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product GTP-binding family protein  note GTP-binding family protein; FUNCTIONS IN: GTP binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HflX (InterPro:IPR016496), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: GTP binding (TAIR:AT3G49725.1); Has 19592 Blast hits to 18775 proteins in 1668 species: Archae - 169; Bacteria - 13173; Metazoa - 442; Fungi - 122; Plants - 126; Viruses - 0; Other Eukaryotes - 5560 (source: NCBI BLink).  protein_id AT5G57960.1p  transcript_id AT5G57960.1  protein_id AT5G57960.1p  transcript_id AT5G57960.1  
At5g57970	chr5:023467316	0.0	W/23467316-23467805,23467917-23467974,23468067-23468150,23468250-23468391,23468641-23468910	AT5G57970.1  CDS  gene_syn MTI20.23, MTI20_23  go_process DNA repair|GO:0006281||IEA  go_process base-excision repair|GO:0006284||IEA  go_function catalytic activity|GO:0003824||IEA  go_function DNA-3-methyladenine glycosylase I activity|GO:0008725||IEA  go_process DNA repair|GO:0006281||ISS  go_function DNA-3-methyladenine glycosylase I activity|GO:0008725||ISS  product methyladenine glycosylase family protein  note methyladenine glycosylase family protein; FUNCTIONS IN: DNA-3-methyladenine glycosylase I activity, catalytic activity; INVOLVED IN: DNA repair, base-excision repair; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Methyladenine glycosylase (InterPro:IPR005019); BEST Arabidopsis thaliana protein match is: methyladenine glycosylase family protein (TAIR:AT1G80850.1); Has 2181 Blast hits to 2022 proteins in 816 species: Archae - 7; Bacteria - 1562; Metazoa - 145; Fungi - 6; Plants - 83; Viruses - 0; Other Eukaryotes - 378 (source: NCBI BLink).  protein_id AT5G57970.1p  transcript_id AT5G57970.1  protein_id AT5G57970.1p  transcript_id AT5G57970.1  
At5g57970	chr5:023467316	0.0	W/23467316-23467805,23467917-23467974,23468067-23468150,23468250-23468391,23468641-23468910	AT5G57970.2  CDS  gene_syn MTI20.23, MTI20_23  go_process DNA repair|GO:0006281||IEA  go_process base-excision repair|GO:0006284||IEA  go_function catalytic activity|GO:0003824||IEA  go_function DNA-3-methyladenine glycosylase I activity|GO:0008725||IEA  go_process DNA repair|GO:0006281||ISS  go_function DNA-3-methyladenine glycosylase I activity|GO:0008725||ISS  product methyladenine glycosylase family protein  note methyladenine glycosylase family protein; FUNCTIONS IN: DNA-3-methyladenine glycosylase I activity, catalytic activity; INVOLVED IN: DNA repair, base-excision repair; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Methyladenine glycosylase (InterPro:IPR005019); BEST Arabidopsis thaliana protein match is: methyladenine glycosylase family protein (TAIR:AT1G80850.1); Has 2181 Blast hits to 2022 proteins in 816 species: Archae - 7; Bacteria - 1562; Metazoa - 145; Fungi - 6; Plants - 83; Viruses - 0; Other Eukaryotes - 378 (source: NCBI BLink).  protein_id AT5G57970.2p  transcript_id AT5G57970.2  protein_id AT5G57970.2p  transcript_id AT5G57970.2  
At5g57980	chr5:023469559	0.0	C/23469559-23469768,23469050-23469472	AT5G57980.1  CDS  gene_syn MTI20.24, MTI20_24, RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C, RPB5C  gene RPB5C  function NRPB5-like protein of unknown function; homologous to budding yeast RPB5  go_component nucleus|GO:0005634||IEA  go_process transcription|GO:0006350||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_process transcription|GO:0006350||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C); DNA binding / DNA-directed RNA polymerase  note RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C (RPB5C); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: shoot apex, leaf whorl, sepal, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RNA polymerase, Rpb5, N-terminal (InterPro:IPR005571), RNA polymerase, subunit H/Rpb5 C-terminal (InterPro:IPR000783), DNA-directed RNA polymerase, RPB5 subunit (InterPro:IPR014381); BEST Arabidopsis thaliana protein match is: NRPB5; DNA binding / DNA-directed RNA polymerase (TAIR:AT3G22320.1); Has 635 Blast hits to 635 proteins in 212 species: Archae - 93; Bacteria - 0; Metazoa - 131; Fungi - 144; Plants - 70; Viruses - 5; Other Eukaryotes - 192 (source: NCBI BLink).  protein_id AT5G57980.1p  transcript_id AT5G57980.1  protein_id AT5G57980.1p  transcript_id AT5G57980.1  
At5g57990	chr5:023473683	0.0	C/23473683-23473997,23473419-23473533,23473165-23473275,23472901-23473073,23472457-23472780,23472190-23472315,23471354-23472013,23470765-23471266,23470469-23470559,23470218-23470380	AT5G57990.1  CDS  gene_syn MTI20.25, MTI20_25, UBIQUITIN-SPECIFIC PROTEASE 23, UBP23  gene UBP23  function Encodes a ubiquitin-specific protease.  go_component chloroplast|GO:0009507||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_function ubiquitin-specific protease activity|GO:0004843||ISS  product UBP23 (UBIQUITIN-SPECIFIC PROTEASE 23); ubiquitin thiolesterase/ ubiquitin-specific protease  note UBIQUITIN-SPECIFIC PROTEASE 23 (UBP23); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: UBP18 (UBIQUITIN-SPECIFIC PROTEASE 18); cysteine-type endopeptidase/ ubiquitin thiolesterase (TAIR:AT4G31670.1); Has 6676 Blast hits to 5699 proteins in 213 species: Archae - 0; Bacteria - 47; Metazoa - 3671; Fungi - 911; Plants - 618; Viruses - 3; Other Eukaryotes - 1426 (source: NCBI BLink).  protein_id AT5G57990.1p  transcript_id AT5G57990.1  protein_id AT5G57990.1p  transcript_id AT5G57990.1  
At5g58000	chr5:023477416	0.0	W/23477416-23478046,23478140-23478199,23478299-23478401,23478490-23478564,23478652-23478799,23478882-23478951,23479038-23479103,23479186-23479496	AT5G58000.1  CDS  gene_syn MTI20.26, MTI20_26  go_component endoplasmic reticulum|GO:0005783||IEA  go_component chloroplast|GO:0009507||IEA  product unknown protein  note LOCATED IN: endoplasmic reticulum, chloroplast; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: reticulon family protein (TAIR:AT4G28430.1); Has 1047 Blast hits to 1034 proteins in 125 species: Archae - 0; Bacteria - 2; Metazoa - 715; Fungi - 46; Plants - 58; Viruses - 4; Other Eukaryotes - 222 (source: NCBI BLink).  protein_id AT5G58000.1p  transcript_id AT5G58000.1  protein_id AT5G58000.1p  transcript_id AT5G58000.1  
At5g58003	chr5:023480066	0.0	W/23480066-23480211,23480321-23480352,23480437-23480549,23480628-23480808,23480907-23481205,23481294-23481479,23481559-23481924	AT5G58003.1  CDS  gene_syn C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4, CPL4  gene CPL4  function Encodes a polypeptide that contains FCPH and BRCT domains. RNAi suppression mutant lines were generated, which displayed a range of phenotypic abnormalities, including: incomplete to no cotyledon expansion, slow growth, epinastic leaves or small inflorescences.  go_function phosphoprotein phosphatase activity|GO:0004721||IEA  go_component nucleus|GO:0005634|16905668|IDA  product CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4); phosphoprotein phosphatase  note C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4 (CPL4); FUNCTIONS IN: phosphoprotein phosphatase activity; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FCP1-like phosphatase, phosphatase domain (InterPro:IPR011947), NLI interacting factor (InterPro:IPR004274), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: CPL3 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 3); CTD phosphatase/ phosphoprotein phosphatase (TAIR:AT2G33540.1); Has 806 Blast hits to 665 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 330; Fungi - 161; Plants - 130; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink).  protein_id AT5G58003.1p  transcript_id AT5G58003.1  protein_id AT5G58003.1p  transcript_id AT5G58003.1  
At5g58005	chr5:023482234	0.0	W/23482234-23482317,23482406-23482543,23482629-23482757	AT5G58005.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 87 Blast hits to 87 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 33; Fungi - 28; Plants - 24; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G58005.1p  transcript_id AT5G58005.1  protein_id AT5G58005.1p  transcript_id AT5G58005.1  
At5g58005	chr5:023482234	0.0	W/23482234-23482317,23482406-23482543,23482629-23482757	AT5G58005.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 87 Blast hits to 87 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 33; Fungi - 28; Plants - 24; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G58005.2p  transcript_id AT5G58005.2  protein_id AT5G58005.2p  transcript_id AT5G58005.2  
At5g58010	chr5:023484692	0.0	C/23484692-23484889,23484454-23484600,23484316-23484381,23484105-23484239,23483670-23484017	AT5G58010.1  CDS  gene_syn F2C19.2, F2C19_2  go_component nucleus|GO:0005634|16581911|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: primary root differentiation zone, trichome; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT2G24260.1); Has 1997 Blast hits to 1997 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 201; Fungi - 36; Plants - 1759; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G58010.1p  transcript_id AT5G58010.1  protein_id AT5G58010.1p  transcript_id AT5G58010.1  
At5g58020	chr5:023485585	0.0	W/23485585-23486649	AT5G58020.1  CDS  gene_syn F2C19.3, F2C19_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF602 (InterPro:IPR006735); Has 270 Blast hits to 270 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 129; Fungi - 71; Plants - 21; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT5G58020.1p  transcript_id AT5G58020.1  protein_id AT5G58020.1p  transcript_id AT5G58020.1  
At5g58030	chr5:023488412	0.0	C/23488412-23488483,23488072-23488160,23487904-23487967,23487671-23487748,23487500-23487576,23487342-23487408,23487142-23487249,23487021-23487053	AT5G58030.1  CDS  gene_syn K21L19.2  go_component cellular_component|GO:0005575||ND  go_process ER to Golgi vesicle-mediated transport|GO:0006888||ISS  go_function molecular_function|GO:0003674||ND  product transport protein particle (TRAPP) component Bet3 family protein  note transport protein particle (TRAPP) component Bet3 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ER to Golgi vesicle-mediated transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transport protein particle (TRAPP) component (InterPro:IPR007194), TRAPP I complex, Trs31 (InterPro:IPR016696); Has 400 Blast hits to 390 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 157; Fungi - 137; Plants - 31; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT5G58030.1p  transcript_id AT5G58030.1  protein_id AT5G58030.1p  transcript_id AT5G58030.1  
At5g58040	chr5:023488865	0.0	W/23488865-23489632,23490161-23490390,23490513-23490639,23490718-23490786,23490917-23491057,23491210-23491311,23491413-23493014,23493211-23493705,23493944-23494000	AT5G58040.1  CDS  gene_syn ATFIP1[V], Arabidopsis homolog of yeast Fip1 [V], K21L19.3, K21L19_3  gene ATFIP1[V]  function Encodes a subunit of the polyadenylation apparatus that interacts with and stimulates the activity of poly(A) polymerase. Additionally , it interacts with several polyadenylation factor subunits and is an RNA-binding protein. It is suggested that this protein coordinates a number of polyadenylation factor subunits with PAP and with RNA.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723|16282318|IDA  go_function protein binding|GO:0005515|16282318|IPI  product ATFIP1[V] (Arabidopsis homolog of yeast Fip1 [V]); RNA binding / protein binding  note Arabidopsis homolog of yeast Fip1 [V] (ATFIP1[V]); FUNCTIONS IN: protein binding, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Fip1 (InterPro:IPR007854); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28770.1); Has 16933 Blast hits to 11248 proteins in 614 species: Archae - 24; Bacteria - 1277; Metazoa - 8351; Fungi - 1684; Plants - 735; Viruses - 80; Other Eukaryotes - 4782 (source: NCBI BLink).  protein_id AT5G58040.1p  transcript_id AT5G58040.1  protein_id AT5G58040.1p  transcript_id AT5G58040.1  
At5g58050	chr5:023497275	0.0	C/23497275-23497386,23496842-23497138,23496650-23496759,23496061-23496559,23495664-23495984,23495436-23495575,23494880-23495363,23494498-23494796	AT5G58050.1  CDS  gene_syn K21L19.4, K21L19_4, SHV3-LIKE 4, SVL4  gene SVL4  go_process glycerol metabolic process|GO:0006071||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process glycerol metabolic process|GO:0006071||ISS  go_function glycerophosphodiester phosphodiesterase activity|GO:0008889||ISS  go_function kinase activity|GO:0016301||ISS  product SVL4 (SHV3-LIKE 4); glycerophosphodiester phosphodiesterase/ kinase  note SHV3-LIKE 4 (SVL4); FUNCTIONS IN: kinase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: SVL5 (SHV3-LIKE 5); glycerophosphodiester phosphodiesterase/ phosphoric diester hydrolase (TAIR:AT5G58170.1); Has 1358 Blast hits to 924 proteins in 323 species: Archae - 0; Bacteria - 1052; Metazoa - 12; Fungi - 2; Plants - 185; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT5G58050.1p  transcript_id AT5G58050.1  protein_id AT5G58050.1p  transcript_id AT5G58050.1  
At5g58060	chr5:023498277	0.0	W/23498277-23498469,23498618-23498691,23498760-23498849,23498939-23499043,23499260-23499325,23499537-23499623,23500078-23500128	AT5G58060.2  CDS  gene_syn ATGP1, ATYKT61, K21L19.5, K21L19_5, YKT61  gene YKT61  function member of YKT6 Gene Family  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function molecular_function|GO:0003674||ND  product YKT61  note YKT61; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Synaptobrevin (InterPro:IPR001388), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: ATYKT62 (TAIR:AT5G58180.1).  protein_id AT5G58060.2p  transcript_id AT5G58060.2  protein_id AT5G58060.2p  transcript_id AT5G58060.2  
At5g58060	chr5:023498277	0.0	W/23498277-23498469,23498752-23498849,23498939-23499043,23499260-23499325,23499537-23499623,23500078-23500128	AT5G58060.1  CDS  gene_syn ATGP1, ATYKT61, K21L19.5, K21L19_5, YKT61  gene YKT61  function member of YKT6 Gene Family  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function molecular_function|GO:0003674||ND  product YKT61  note YKT61; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Synaptobrevin (InterPro:IPR001388), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: ATYKT62 (TAIR:AT5G58180.1); Has 1009 Blast hits to 1009 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 333; Fungi - 203; Plants - 247; Viruses - 0; Other Eukaryotes - 226 (source: NCBI BLink).  protein_id AT5G58060.1p  transcript_id AT5G58060.1  protein_id AT5G58060.1p  transcript_id AT5G58060.1  
At5g58070	chr5:023500782	0.0	C/23500782-23501156,23500512-23500697	AT5G58070.1  CDS  gene_syn ATTIL, K21L19.9, K21L19_9, TEMPERATURE-INDUCED LIPOCALIN, TIL  gene TIL  function Encodes a temperature-induced lipocalin TIL1. Involved in thermotolerance. Peripherally associated with plasma membrane.  go_component mitochondrion|GO:0005739|15276431|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function transporter activity|GO:0005215||IEA  go_function binding|GO:0005488||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component plasma membrane|GO:0005886|19302169|IDA  go_process transport|GO:0006810||ISS  go_process response to heat|GO:0009408|19302169|IMP  go_process response to cold|GO:0009409|14535880|IEP  go_process response to light stimulus|GO:0009416|18671872|IMP  go_function transporter activity|GO:0005215||ISS  product TIL (TEMPERATURE-INDUCED LIPOCALIN); binding / transporter  note TEMPERATURE-INDUCED LIPOCALIN (TIL); FUNCTIONS IN: binding, transporter activity; INVOLVED IN: transport, response to light stimulus, response to cold, response to heat; LOCATED IN: mitochondrion, endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Lipocalin, bacterial and plant (InterPro:IPR002446), Lipocalin (InterPro:IPR002345), Lipocalin-like (InterPro:IPR013208), Calycin (InterPro:IPR012674), Calycin-like (InterPro:IPR011038); Has 1388 Blast hits to 1373 proteins in 456 species: Archae - 0; Bacteria - 907; Metazoa - 168; Fungi - 8; Plants - 96; Viruses - 5; Other Eukaryotes - 204 (source: NCBI BLink).  protein_id AT5G58070.1p  transcript_id AT5G58070.1  protein_id AT5G58070.1p  transcript_id AT5G58070.1  
At5g58080	chr5:023504021	0.0	C/23504021-23504099,23503782-23503931,23503343-23503714,23503137-23503213,23501928-23503040,23501785-23501850	AT5G58080.1  CDS  gene_syn ARABIDOPSIS RESPONSE REGULATOR 18, ARR18, K21L19.7, K21L19_7  gene ARR18  function member of Response Regulator: B- Type  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function two-component response regulator activity|GO:0000156|11574878|ISS  go_function two-component response regulator activity|GO:0000156|12068096|ISS  go_function two-component response regulator activity|GO:0000156||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ARR18 (ARABIDOPSIS RESPONSE REGULATOR 18); transcription factor/ two-component response regulator  note ARABIDOPSIS RESPONSE REGULATOR 18 (ARR18); FUNCTIONS IN: transcription factor activity, two-component response regulator activity; INVOLVED IN: cytokinin mediated signaling, regulation of transcription; EXPRESSED IN: sepal, juvenile leaf, anther, shoot meristem; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Response regulator, plant B-type (InterPro:IPR017053), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), CheY-like (InterPro:IPR011006), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Signal transduction response regulator, receiver region (InterPro:IPR001789), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: ARR10 (ARABIDOPSIS RESPONSE REGULATOR 10); transcription factor/ two-component response regulator (TAIR:AT4G31920.1); Has 48576 Blast hits to 48351 proteins in 1686 species: Archae - 259; Bacteria - 41080; Metazoa - 25; Fungi - 204; Plants - 1303; Viruses - 2; Other Eukaryotes - 5703 (source: NCBI BLink).  protein_id AT5G58080.1p  transcript_id AT5G58080.1  protein_id AT5G58080.1p  transcript_id AT5G58080.1  
At5g58090	chr5:023506865	0.0	C/23506865-23507193,23505556-23506660	AT5G58090.1  CDS  gene_syn K21L19.12, K21L19_12  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component anchored to plasma membrane|GO:0046658|12805588|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT4G31140.1); Has 1739 Blast hits to 1690 proteins in 137 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 53; Plants - 1666; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G58090.1p  transcript_id AT5G58090.1  protein_id AT5G58090.1p  transcript_id AT5G58090.1  
At5g58100	chr5:023507828	0.0	W/23507828-23507896,23508064-23508187,23508272-23508334,23508427-23508528,23508621-23508789,23508888-23508986,23509203-23509352,23509432-23509471,23509625-23509682,23509772-23509854,23510090-23510188,23510306-23510421,23510557-23510675,23510795-23510865,23511443-23511548,23511712-23511851,23511950-23512108,23512421-23512524,23512723-23512898,23513460-23513649,23513781-23513880,23514056-23514224,23514352-23514434,23514535-23514611,23514692-23514863	AT5G58100.1  CDS  gene_syn K21L19.10, K21L19_10  go_process pollen exine formation|GO:0010584||IMP  product unknown protein  note unknown protein; INVOLVED IN: pollen exine formation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28720.1); Has 82 Blast hits to 62 proteins in 14 species: Archae - 2; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT5G58100.1p  transcript_id AT5G58100.1  protein_id AT5G58100.1p  transcript_id AT5G58100.1  
At5g58110	chr5:023515275	0.0	W/23515275-23515436,23515524-23515577,23515675-23515755,23515840-23515909,23516116-23516204,23516345-23516479	AT5G58110.1  CDS  gene_syn K21L19.11, K21L19_11  go_component cytoplasm|GO:0005737||IEA  go_function ATPase activator activity|GO:0001671||IEA  go_function chaperone binding|GO:0051087||IEA  go_process biological_process|GO:0008150||ND  product ATPase activator/ chaperone binding  note ATPase activator/ chaperone binding; FUNCTIONS IN: ATPase activator activity, chaperone binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Activator of Hsp90 ATPase, N-terminal (InterPro:IPR015310); Has 217 Blast hits to 215 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 138; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT5G58110.1p  transcript_id AT5G58110.1  protein_id AT5G58110.1p  transcript_id AT5G58110.1  
At5g58120	chr5:023517492	0.0	W/23517492-23517967,23518063-23519158,23519267-23519563,23519656-23520927	AT5G58120.1  CDS  gene_syn K21L19.1, K21L19_1  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor (TAIR:AT1G63750.3); Has 11233 Blast hits to 9336 proteins in 348 species: Archae - 6; Bacteria - 367; Metazoa - 723; Fungi - 18; Plants - 9880; Viruses - 0; Other Eukaryotes - 239 (source: NCBI BLink).  protein_id AT5G58120.1p  transcript_id AT5G58120.1  protein_id AT5G58120.1p  transcript_id AT5G58120.1  
At5g58130	chr5:023523563	0.0	C/23523563-23523766,23523249-23523428,23522805-23523149,23521190-23522707	AT5G58130.1  CDS  gene_syn K21L19.13, K21L19_13  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT3G50690.1); Has 13214 Blast hits to 6289 proteins in 622 species: Archae - 145; Bacteria - 5890; Metazoa - 2525; Fungi - 1196; Plants - 360; Viruses - 129; Other Eukaryotes - 2969 (source: NCBI BLink).  protein_id AT5G58130.1p  transcript_id AT5G58130.1  protein_id AT5G58130.1p  transcript_id AT5G58130.1  
At5g58140	chr5:023524771	0.0	W/23524771-23525279,23525403-23525585,23525667-23525758,23525885-23526092,23526495-23526711,23526874-23526944,23527074-23527180,23527267-23527316,23527407-23527511,23527592-23527651,23527727-23527816,23527892-23527968,23528066-23528150,23528247-23528327,23528407-23528510,23528726-23528775,23528912-23529018,23529096-23529218,23529317-23529368,23529453-23529565,23529646-23529781,23529871-23529947	AT5G58140.3  CDS  gene_syn K21L19.6, K21L19_6, NON PHOTOTROPIC HYPOCOTYL 1-LIKE, NPL1, PHOT2, PHOTOTROPIN 2  gene PHOT2  function Membrane-bound protein serine/threonine kinase that functions as blue light photoreceptor in redundancy with PHO1. Involved in stomatal opening, chloroplast movement and phototropism. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT2 possesses two LOV (LOV1 and LOV2, for light-oxygen-voltage-sensing) domains involved in FMN-binding and a C-terminus forming a serine/threonine kinase domain. LOV2 acts as an inhibitor of phototropin kinase in the dark, and light cancels the inhibition through cysteine-FMN adduct formation. LOV1 in contrast acts as an attenuator of photoactivation. Localized to the Golgi apparatus under the induction of blue light.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component Golgi apparatus|GO:0005794|16507089|IDA  go_component membrane|GO:0016020|12172018|ISS  go_process response to blue light|GO:0009637|15749755|IGI  go_process phototropism|GO:0009638|11371609|IMP  go_process chloroplast relocation|GO:0009902|11992825|TAS  go_process stomatal movement|GO:0010118|11740564|IMP  go_process regulation of proton transport|GO:0010155|15821287|IGI  go_process negative regulation of anion channel activity by blue light|GO:0010362|17319842|IMP  go_process protein amino acid autophosphorylation|GO:0046777|16150710|TAS  go_function protein serine/threonine kinase activity|GO:0004674|11371609|IDA  go_function blue light photoreceptor activity|GO:0009882|16507089|IMP  go_function FMN binding|GO:0010181|16150710|TAS  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product PHOT2 (PHOTOTROPIN 2); FMN binding / blue light photoreceptor/ kinase/ protein serine/threonine kinase  note PHOTOTROPIN 2 (PHOT2); FUNCTIONS IN: protein serine/threonine kinase activity, FMN binding, kinase activity, blue light photoreceptor activity; INVOLVED IN: in 7 processes; LOCATED IN: Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), PAS-associated, C-terminal (InterPro:IPR000700), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: PHOT1 (PHOTOTROPIN 1); FMN binding / blue light photoreceptor/ kinase/ protein binding / protein serine/threonine kinase (TAIR:AT3G45780.2); Has 83920 Blast hits to 80659 proteins in 2206 species: Archae - 187; Bacteria - 11434; Metazoa - 34236; Fungi - 8362; Plants - 13702; Viruses - 403; Other Eukaryotes - 15596 (source: NCBI BLink).  protein_id AT5G58140.3p  transcript_id AT5G58140.3  protein_id AT5G58140.3p  transcript_id AT5G58140.3  
At5g58140	chr5:023524771	0.0	W/23524771-23525279,23525403-23525585,23525667-23525758,23525885-23526092,23526495-23526711,23526874-23526944,23527074-23527180,23527267-23527316,23527407-23527511,23527592-23527651,23527727-23527816,23527892-23527968,23528066-23528150,23528247-23528327,23528407-23528510,23528726-23528775,23528912-23529018,23529096-23529218,23529317-23529368,23529453-23529565,23529646-23529786,23529871-23529993	AT5G58140.1  CDS  gene_syn K21L19.6, K21L19_6, NON PHOTOTROPIC HYPOCOTYL 1-LIKE, NPL1, PHOT2, PHOTOTROPIN 2  gene PHOT2  function Membrane-bound protein serine/threonine kinase that functions as blue light photoreceptor in redundancy with PHO1. Involved in stomatal opening, chloroplast movement and phototropism. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT2 possesses two LOV (LOV1 and LOV2, for light-oxygen-voltage-sensing) domains involved in FMN-binding and a C-terminus forming a serine/threonine kinase domain. LOV2 acts as an inhibitor of phototropin kinase in the dark, and light cancels the inhibition through cysteine-FMN adduct formation. LOV1 in contrast acts as an attenuator of photoactivation. Localized to the Golgi apparatus under the induction of blue light.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component Golgi apparatus|GO:0005794|16507089|IDA  go_component membrane|GO:0016020|12172018|ISS  go_process response to blue light|GO:0009637|15749755|IGI  go_process phototropism|GO:0009638|11371609|IMP  go_process chloroplast relocation|GO:0009902|11992825|TAS  go_process stomatal movement|GO:0010118|11740564|IMP  go_process regulation of proton transport|GO:0010155|15821287|IGI  go_process negative regulation of anion channel activity by blue light|GO:0010362|17319842|IMP  go_process protein amino acid autophosphorylation|GO:0046777|16150710|TAS  go_function protein serine/threonine kinase activity|GO:0004674|11371609|IDA  go_function blue light photoreceptor activity|GO:0009882|16507089|IMP  go_function FMN binding|GO:0010181|16150710|TAS  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product PHOT2 (PHOTOTROPIN 2); FMN binding / blue light photoreceptor/ kinase/ protein serine/threonine kinase  note PHOTOTROPIN 2 (PHOT2); FUNCTIONS IN: protein serine/threonine kinase activity, FMN binding, kinase activity, blue light photoreceptor activity; INVOLVED IN: in 7 processes; LOCATED IN: Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Tyrosine protein kinase (InterPro:IPR001245), PAS-associated, C-terminal (InterPro:IPR000700), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: PHOT1 (PHOTOTROPIN 1); FMN binding / blue light photoreceptor/ kinase/ protein binding / protein serine/threonine kinase (TAIR:AT3G45780.2); Has 84320 Blast hits to 81065 proteins in 2244 species: Archae - 187; Bacteria - 11472; Metazoa - 34414; Fungi - 8361; Plants - 13775; Viruses - 410; Other Eukaryotes - 15701 (source: NCBI BLink).  protein_id AT5G58140.1p  transcript_id AT5G58140.1  protein_id AT5G58140.1p  transcript_id AT5G58140.1  
At5g58140	chr5:023524771	0.0	W/23524771-23525279,23525403-23525585,23525667-23525758,23525885-23526092,23526495-23526711,23526874-23526944,23527074-23527180,23527267-23527316,23527407-23527511,23527592-23527651,23527727-23527816,23527892-23527968,23528066-23528150,23528247-23528327,23528407-23528510,23528726-23528775,23528912-23529018,23529096-23529218,23529317-23529368,23529453-23529565,23529646-23529786,23529871-23529993	AT5G58140.2  CDS  gene_syn K21L19.6, K21L19_6, NON PHOTOTROPIC HYPOCOTYL 1-LIKE, NPL1, PHOT2, PHOTOTROPIN 2  gene PHOT2  function Membrane-bound protein serine/threonine kinase that functions as blue light photoreceptor in redundancy with PHO1. Involved in stomatal opening, chloroplast movement and phototropism. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT2 possesses two LOV (LOV1 and LOV2, for light-oxygen-voltage-sensing) domains involved in FMN-binding and a C-terminus forming a serine/threonine kinase domain. LOV2 acts as an inhibitor of phototropin kinase in the dark, and light cancels the inhibition through cysteine-FMN adduct formation. LOV1 in contrast acts as an attenuator of photoactivation. Localized to the Golgi apparatus under the induction of blue light.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component Golgi apparatus|GO:0005794|16507089|IDA  go_component membrane|GO:0016020|12172018|ISS  go_process response to blue light|GO:0009637|15749755|IGI  go_process phototropism|GO:0009638|11371609|IMP  go_process chloroplast relocation|GO:0009902|11992825|TAS  go_process stomatal movement|GO:0010118|11740564|IMP  go_process regulation of proton transport|GO:0010155|15821287|IGI  go_process negative regulation of anion channel activity by blue light|GO:0010362|17319842|IMP  go_process protein amino acid autophosphorylation|GO:0046777|16150710|TAS  go_function protein serine/threonine kinase activity|GO:0004674|11371609|IDA  go_function blue light photoreceptor activity|GO:0009882|16507089|IMP  go_function FMN binding|GO:0010181|16150710|TAS  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product PHOT2 (PHOTOTROPIN 2); FMN binding / blue light photoreceptor/ kinase/ protein serine/threonine kinase  note PHOTOTROPIN 2 (PHOT2); FUNCTIONS IN: protein serine/threonine kinase activity, FMN binding, kinase activity, blue light photoreceptor activity; INVOLVED IN: in 7 processes; LOCATED IN: Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Protein kinase, ATP binding site (InterPro:IPR017441), PAS fold (InterPro:IPR013767), Serine/threonine protein kinase (InterPro:IPR002290), PAS (InterPro:IPR000014), PAS-associated, C-terminal (InterPro:IPR000700), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: PHOT1 (PHOTOTROPIN 1); FMN binding / blue light photoreceptor/ kinase/ protein binding / protein serine/threonine kinase (TAIR:AT3G45780.2); Has 84320 Blast hits to 81065 proteins in 2244 species: Archae - 187; Bacteria - 11472; Metazoa - 34414; Fungi - 8361; Plants - 13775; Viruses - 410; Other Eukaryotes - 15701 (source: NCBI BLink).  protein_id AT5G58140.2p  transcript_id AT5G58140.2  protein_id AT5G58140.2p  transcript_id AT5G58140.2  
At5g58140	chr5:023524771	0.0	W/23524771-23525279,23525403-23525585,23525667-23525758,23525885-23526092,23526495-23526711,23526874-23526944,23527074-23527180,23527267-23527316,23527407-23527511,23527592-23527651,23527727-23527816,23527892-23527968,23528066-23528150,23528247-23528327,23528407-23528541	AT5G58140.4  CDS  gene_syn K21L19.6, K21L19_6, NON PHOTOTROPIC HYPOCOTYL 1-LIKE, NPL1, PHOT2, PHOTOTROPIN 2  gene PHOT2  function Membrane-bound protein serine/threonine kinase that functions as blue light photoreceptor in redundancy with PHO1. Involved in stomatal opening, chloroplast movement and phototropism. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT2 possesses two LOV (LOV1 and LOV2, for light-oxygen-voltage-sensing) domains involved in FMN-binding and a C-terminus forming a serine/threonine kinase domain. LOV2 acts as an inhibitor of phototropin kinase in the dark, and light cancels the inhibition through cysteine-FMN adduct formation. LOV1 in contrast acts as an attenuator of photoactivation. Localized to the Golgi apparatus under the induction of blue light.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component Golgi apparatus|GO:0005794|16507089|IDA  go_component membrane|GO:0016020|12172018|ISS  go_process response to blue light|GO:0009637|15749755|IGI  go_process phototropism|GO:0009638|11371609|IMP  go_process chloroplast relocation|GO:0009902|11992825|TAS  go_process stomatal movement|GO:0010118|11740564|IMP  go_process regulation of proton transport|GO:0010155|15821287|IGI  go_process negative regulation of anion channel activity by blue light|GO:0010362|17319842|IMP  go_process protein amino acid autophosphorylation|GO:0046777|16150710|TAS  go_function protein serine/threonine kinase activity|GO:0004674|11371609|IDA  go_function blue light photoreceptor activity|GO:0009882|16507089|IMP  go_function FMN binding|GO:0010181|16150710|TAS  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product PHOT2 (PHOTOTROPIN 2); FMN binding / blue light photoreceptor/ kinase/ protein serine/threonine kinase  note PHOTOTROPIN 2 (PHOT2); FUNCTIONS IN: protein serine/threonine kinase activity, FMN binding, kinase activity, blue light photoreceptor activity; INVOLVED IN: in 7 processes; LOCATED IN: Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), PAS-associated, C-terminal (InterPro:IPR000700), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: PHOT1 (PHOTOTROPIN 1); FMN binding / blue light photoreceptor/ kinase/ protein binding / protein serine/threonine kinase (TAIR:AT3G45780.2); Has 18498 Blast hits to 16087 proteins in 948 species: Archae - 154; Bacteria - 4353; Metazoa - 7108; Fungi - 1814; Plants - 1712; Viruses - 9; Other Eukaryotes - 3348 (source: NCBI BLink).  protein_id AT5G58140.4p  transcript_id AT5G58140.4  protein_id AT5G58140.4p  transcript_id AT5G58140.4  
At5g58150	chr5:023530216	0.0	C/23530216-23532573	AT5G58150.1  CDS  gene_syn MCK7.2, MCK7_2  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT2G24230.1); Has 81669 Blast hits to 50963 proteins in 1583 species: Archae - 31; Bacteria - 6965; Metazoa - 30604; Fungi - 2316; Plants - 34773; Viruses - 109; Other Eukaryotes - 6871 (source: NCBI BLink).  protein_id AT5G58150.1p  transcript_id AT5G58150.1  protein_id AT5G58150.1p  transcript_id AT5G58150.1  
At5g58160	chr5:023533724	0.0	W/23533724-23533796,23534016-23534716,23534934-23535152,23535246-23537063,23537181-23537252,23537376-23537474,23537615-23537656,23537745-23537825,23537909-23537959,23538045-23538126,23538200-23538447,23538540-23538656,23538912-23538980,23539079-23539145,23539230-23539465	AT5G58160.1  CDS  gene_syn MCK7.3, MCK7_3  go_process cellular component organization|GO:0016043||IEA  go_process actin cytoskeleton organization|GO:0030036||IEA  go_function actin binding|GO:0003779|12417149|ISS  go_function actin binding|GO:0003779|15256004|ISS  go_function actin binding|GO:0003779||ISS  product actin binding  note actin binding; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Actin-binding FH2 and DRF autoregulatory (InterPro:IPR003104), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Actin-binding FH2 (InterPro:IPR015425), Tensin phosphatase, C2 domain (InterPro:IPR014020); BEST Arabidopsis thaliana protein match is: formin homology 2 domain-containing protein / FH2 domain-containing protein (TAIR:AT2G25050.1); Has 176085 Blast hits to 80584 proteins in 2071 species: Archae - 318; Bacteria - 30726; Metazoa - 76316; Fungi - 24501; Plants - 18155; Viruses - 5055; Other Eukaryotes - 21014 (source: NCBI BLink).  protein_id AT5G58160.1p  transcript_id AT5G58160.1  protein_id AT5G58160.1p  transcript_id AT5G58160.1  
At5g58170	chr5:023542981	0.0	C/23542981-23543092,23542601-23542897,23542409-23542518,23541820-23542318,23541423-23541743,23541195-23541334,23540640-23541123,23540261-23540550	AT5G58170.1  CDS  gene_syn MCK7.4, MCK7_4, SHV3-LIKE 5, SVL5  gene SVL5  go_process glycerol metabolic process|GO:0006071||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function phosphoric diester hydrolase activity|GO:0008081||IEA  go_function glycerophosphodiester phosphodiesterase activity|GO:0008889||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process glycerol metabolic process|GO:0006071||ISS  go_function glycerophosphodiester phosphodiesterase activity|GO:0008889||ISS  product SVL5 (SHV3-LIKE 5); glycerophosphodiester phosphodiesterase/ phosphoric diester hydrolase  note SHV3-LIKE 5 (SVL5); FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: SVL4 (SHV3-LIKE 4); glycerophosphodiester phosphodiesterase/ kinase (TAIR:AT5G58050.1); Has 1319 Blast hits to 952 proteins in 335 species: Archae - 0; Bacteria - 1009; Metazoa - 12; Fungi - 4; Plants - 190; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT5G58170.1p  transcript_id AT5G58170.1  protein_id AT5G58170.1p  transcript_id AT5G58170.1  
At5g58180	chr5:023544011	0.0	W/23544011-23544209,23544301-23544398,23544481-23544579,23544682-23544747,23544897-23544983,23545107-23545157	AT5G58180.1  CDS  gene_syn ATYKT62, MCK7.5, MCK7_5, YKT62  gene ATYKT62  function member of YKT6 Gene Family  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function molecular_function|GO:0003674||ND  product ATYKT62  note ATYKT62; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Synaptobrevin (InterPro:IPR001388), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: YKT61 (TAIR:AT5G58060.1); Has 877 Blast hits to 877 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 307; Fungi - 199; Plants - 179; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).  protein_id AT5G58180.1p  transcript_id AT5G58180.1  protein_id AT5G58180.1p  transcript_id AT5G58180.1  
At5g58190	chr5:023546434	0.0	W/23546434-23546488,23546636-23546673,23546771-23546915,23546996-23547075,23547151-23547462,23547817-23548320,23548475-23548687,23549124-23549363	AT5G58190.2  CDS  gene_syn ECT10, MCK7.6, MCK7_6  gene ECT10  product ECT10  note ECT10; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: YT521-B-like protein (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13060.2); Has 796 Blast hits to 789 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 415; Fungi - 98; Plants - 199; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT5G58190.2p  transcript_id AT5G58190.2  protein_id AT5G58190.2p  transcript_id AT5G58190.2  
At5g58190	chr5:023546434	0.0	W/23546434-23546488,23546636-23546673,23546774-23546915,23546996-23547075,23547151-23547462,23547817-23548320,23548475-23548687,23549124-23549363	AT5G58190.1  CDS  gene_syn ECT10, MCK7.6, MCK7_6  gene ECT10  product ECT10  note ECT10; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: YT521-B-like protein (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13060.2); Has 793 Blast hits to 786 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 414; Fungi - 98; Plants - 199; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT5G58190.1p  transcript_id AT5G58190.1  protein_id AT5G58190.1p  transcript_id AT5G58190.1  
At5g58200	chr5:023550283	0.0	W/23550283-23550296,23550793-23550918,23551245-23551351,23551441-23551512,23551623-23551972	AT5G58200.1  CDS  gene_syn MCK7.7, MCK7_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 226 Blast hits to 226 proteins in 58 species: Archae - 0; Bacteria - 96; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).  protein_id AT5G58200.1p  transcript_id AT5G58200.1  protein_id AT5G58200.1p  transcript_id AT5G58200.1  
At5g58210	chr5:023552427	0.0	W/23552427-23552457,23552554-23552713,23552836-23553391,23553484-23553755,23553922-23554045	AT5G58210.1  CDS  gene_syn MCK7.8, MCK7_8  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT3G52170.1); Has 3539 Blast hits to 1589 proteins in 292 species: Archae - 22; Bacteria - 448; Metazoa - 785; Fungi - 532; Plants - 137; Viruses - 42; Other Eukaryotes - 1573 (source: NCBI BLink).  protein_id AT5G58210.1p  transcript_id AT5G58210.1  protein_id AT5G58210.1p  transcript_id AT5G58210.1  
At5g58210	chr5:023552427	0.0	W/23552427-23552457,23552554-23552713,23552836-23553391,23553484-23553755,23553922-23554045	AT5G58210.2  CDS  gene_syn MCK7.8, MCK7_8  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT3G52170.1); Has 3539 Blast hits to 1589 proteins in 292 species: Archae - 22; Bacteria - 448; Metazoa - 785; Fungi - 532; Plants - 137; Viruses - 42; Other Eukaryotes - 1573 (source: NCBI BLink).  protein_id AT5G58210.2p  transcript_id AT5G58210.2  protein_id AT5G58210.2p  transcript_id AT5G58210.2  
At5g58210	chr5:023552427	0.0	W/23552427-23552457,23552554-23552713,23552836-23553391,23553484-23553755,23553922-23554045	AT5G58210.3  CDS  gene_syn MCK7.8, MCK7_8  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT3G52170.1); Has 3539 Blast hits to 1589 proteins in 292 species: Archae - 22; Bacteria - 448; Metazoa - 785; Fungi - 532; Plants - 137; Viruses - 42; Other Eukaryotes - 1573 (source: NCBI BLink).  protein_id AT5G58210.3p  transcript_id AT5G58210.3  protein_id AT5G58210.3p  transcript_id AT5G58210.3  
At5g58210	chr5:023552427	0.0	W/23552427-23552457,23552554-23552713,23552836-23553391,23553484-23553755,23553922-23554045	AT5G58210.4  CDS  gene_syn MCK7.8, MCK7_8  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT3G52170.1); Has 3539 Blast hits to 1589 proteins in 292 species: Archae - 22; Bacteria - 448; Metazoa - 785; Fungi - 532; Plants - 137; Viruses - 42; Other Eukaryotes - 1573 (source: NCBI BLink).  protein_id AT5G58210.4p  transcript_id AT5G58210.4  protein_id AT5G58210.4p  transcript_id AT5G58210.4  
At5g58220	chr5:023555580	0.0	C/23555580-23555861,23555398-23555499,23555156-23555312,23554546-23554865	AT5G58220.2  CDS  gene_syn MCK7.9, MCK7_9, TTL, Transthyretin-Like protein  gene TTL  go_component peroxisome|GO:0005777|17951448|IDA  go_function steroid binding|GO:0005496||IEA  go_component extrinsic to internal side of plasma membrane|GO:0031234|15319482|IDA  go_process regulation of cell growth by extracellular stimulus|GO:0001560|15319482|IMP  go_process brassinosteroid mediated signaling|GO:0009742|15319482|IMP  product TTL (Transthyretin-Like protein); steroid binding  note Transthyretin-Like protein (TTL); FUNCTIONS IN: steroid binding; INVOLVED IN: regulation of cell growth by extracellular stimulus, brassinosteroid mediated signaling; LOCATED IN: extrinsic to internal side of plasma membrane, peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional hydroxyisourate hydrolase/2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase (InterPro:IPR017129), OHCU_decarboxylase (InterPro:IPR018020), Transthyretin/hydroxyisourate hydrolase (InterPro:IPR000895); Has 1733 Blast hits to 1733 proteins in 455 species: Archae - 2; Bacteria - 963; Metazoa - 162; Fungi - 55; Plants - 26; Viruses - 0; Other Eukaryotes - 525 (source: NCBI BLink).  protein_id AT5G58220.2p  transcript_id AT5G58220.2  protein_id AT5G58220.2p  transcript_id AT5G58220.2  
At5g58220	chr5:023555580	0.0	C/23555580-23555861,23555398-23555499,23555156-23555312,23554546-23554940	AT5G58220.3  CDS  gene_syn MCK7.9, MCK7_9, TTL, Transthyretin-Like protein  gene TTL  go_component peroxisome|GO:0005777|17951448|IDA  go_function steroid binding|GO:0005496||IEA  go_component extrinsic to internal side of plasma membrane|GO:0031234|15319482|IDA  go_process regulation of cell growth by extracellular stimulus|GO:0001560|15319482|IMP  go_process brassinosteroid mediated signaling|GO:0009742|15319482|IMP  product TTL (Transthyretin-Like protein); steroid binding  note Transthyretin-Like protein (TTL); FUNCTIONS IN: steroid binding; INVOLVED IN: regulation of cell growth by extracellular stimulus, brassinosteroid mediated signaling; LOCATED IN: extrinsic to internal side of plasma membrane, peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional hydroxyisourate hydrolase/2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase (InterPro:IPR017129), OHCU_decarboxylase (InterPro:IPR018020), Hydroxyisourate hydrolase (InterPro:IPR014306), Transthyretin/hydroxyisourate hydrolase (InterPro:IPR000895); Has 2196 Blast hits to 2196 proteins in 495 species: Archae - 2; Bacteria - 1026; Metazoa - 464; Fungi - 57; Plants - 26; Viruses - 0; Other Eukaryotes - 621 (source: NCBI BLink).  protein_id AT5G58220.3p  transcript_id AT5G58220.3  protein_id AT5G58220.3p  transcript_id AT5G58220.3  
At5g58220	chr5:023555580	0.0	C/23555580-23555861,23555398-23555499,23555156-23555312,23554546-23554979	AT5G58220.1  CDS  gene_syn MCK7.9, MCK7_9, TTL, Transthyretin-Like protein  gene TTL  go_component peroxisome|GO:0005777|17951448|IDA  go_function steroid binding|GO:0005496||IEA  go_component extrinsic to internal side of plasma membrane|GO:0031234|15319482|IDA  go_process regulation of cell growth by extracellular stimulus|GO:0001560|15319482|IMP  go_process brassinosteroid mediated signaling|GO:0009742|15319482|IMP  product TTL (Transthyretin-Like protein); steroid binding  note Transthyretin-Like protein (TTL); FUNCTIONS IN: steroid binding; INVOLVED IN: regulation of cell growth by extracellular stimulus, brassinosteroid mediated signaling; LOCATED IN: extrinsic to internal side of plasma membrane, peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional hydroxyisourate hydrolase/2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase (InterPro:IPR017129), OHCU_decarboxylase (InterPro:IPR018020), Hydroxyisourate hydrolase (InterPro:IPR014306), Transthyretin/hydroxyisourate hydrolase (InterPro:IPR000895); Has 2194 Blast hits to 2194 proteins in 493 species: Archae - 2; Bacteria - 1026; Metazoa - 464; Fungi - 57; Plants - 26; Viruses - 0; Other Eukaryotes - 619 (source: NCBI BLink).  protein_id AT5G58220.1p  transcript_id AT5G58220.1  protein_id AT5G58220.1p  transcript_id AT5G58220.1  
At5g58230	chr5:023556112	0.0	W/23556112-23556456,23556560-23556886,23557052-23557204,23557342-23557466,23557579-23557674,23557766-23557994	AT5G58230.1  CDS  gene_syn MCK7.10, MCK7_10, MEE70, MSI1, MULTICOPY SUPRESSOR OF IRA1, maternal effect embryo arrest 70  gene MSI1  function Encodes a WD-40 repeat containing protein that functions in chromatin assembly as part of the CAF1 and FIE complex. Mutants exhibit parthenogenetic development that includes proliferation of unfertilized endosperm and embryos. In heterozygous plants 50% of embryos abort. Of the aborted embryos the early aborted class are homozygous and the later aborting lass are heterozygotes in which the defective allele is maternally transmitted. Other phenotypes include defects in ovule morphogenesis and organ initiation,as well as increased levels of heterochromatic DNA. MSI1 is needed for the transition to flowering. In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively. Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis. In the ovule, the MSI1 transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilization. MSI is biallelically expressed, the paternall allele is expressed in the endosperm and embryo and is not imprinted. MSI1 forms a complex with RBR1 that is required for activation of the imprinted genes FIS2 and FWA. This activation is mediated by MSI1/RBR1 mediated repression of MET1.  go_component chloroplast|GO:0009507|15028209|IDA  go_component nucleus|GO:0005634|12736201|TAS  go_component chromatin remodeling complex|GO:0016585|12970192|IPI  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process genetic imprinting|GO:0006349|18700816|IPI  go_process multicellular organismal development|GO:0007275|12736201|IMP  go_process cell proliferation|GO:0008283|17021044|IMP  go_process pollen development|GO:0009555|18045841|IGI  go_process pollen development|GO:0009555|18045841|IMP  go_process pollen development|GO:0009555|19237690|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process regulation of flower development|GO:0009909|16554362|IMP  go_process trichome differentiation|GO:0010026|17021044|IMP  go_process seed coat development|GO:0010214|17172356|IMP  go_process chromatin modification|GO:0016568|12736201|IMP  go_process heterochromatin formation|GO:0031507|16452472|IMP  go_process positive regulation of cell cycle|GO:0045787|18045841|IGI  go_process seed development|GO:0048316|17172356|IMP  go_process leaf development|GO:0048366|17021044|IMP  go_function protein binding|GO:0005515|12970192|IPI  product MSI1 (MULTICOPY SUPRESSOR OF IRA1); protein binding  note MULTICOPY SUPRESSOR OF IRA1 (MSI1); FUNCTIONS IN: protein binding; INVOLVED IN: in 13 processes; LOCATED IN: nucleus, chloroplast, CUL4 RING ubiquitin ligase complex, chromatin remodeling complex; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: MSI2 (MULTICOPY SUPPRESSOR OF IRA1 2) (TAIR:AT2G16780.1); Has 22386 Blast hits to 15073 proteins in 500 species: Archae - 4; Bacteria - 1880; Metazoa - 10685; Fungi - 4473; Plants - 2261; Viruses - 0; Other Eukaryotes - 3083 (source: NCBI BLink).  protein_id AT5G58230.1p  transcript_id AT5G58230.1  protein_id AT5G58230.1p  transcript_id AT5G58230.1  
At5g58240	chr5:023559057	0.0	C/23559057-23559171,23558742-23558890,23558541-23558639,23558349-23558468	AT5G58240.2  CDS  gene_syn MCK7.11, MCK7_11  function Encodes a Fhit protein. Has nucleoside phosphoramidase and adenylylsulfatase activities.  go_process nucleotide metabolic process|GO:0009117||ISS  go_function adenosine 5 -monophosphoramidase activity|GO:0043530|18694747|IDA  go_function adenylylsulfatase activity|GO:0047627|18694747|IDA  go_function bis(5 -adenosyl)-triphosphatase activity|GO:0047710||ISS  product bis(5 -adenosyl)-triphosphatase, putative  note bis(5 -adenosyl)-triphosphatase, putative; FUNCTIONS IN: adenosine 5 -monophosphoramidase activity, bis(5 -adenosyl)-triphosphatase activity, adenylylsulfatase activity; INVOLVED IN: nucleotide metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histidine triad-like motif (InterPro:IPR011146), Histidine triad (HIT) protein (InterPro:IPR001310), Histidine triad motif (InterPro:IPR011151); Has 3359 Blast hits to 3359 proteins in 935 species: Archae - 137; Bacteria - 1669; Metazoa - 212; Fungi - 133; Plants - 39; Viruses - 0; Other Eukaryotes - 1169 (source: NCBI BLink).  protein_id AT5G58240.2p  transcript_id AT5G58240.2  protein_id AT5G58240.2p  transcript_id AT5G58240.2  
At5g58240	chr5:023559254	0.0	C/23559254-23559313,23559057-23559171,23558742-23558890,23558541-23558639,23558349-23558468	AT5G58240.1  CDS  gene_syn MCK7.11, MCK7_11  function Encodes a Fhit protein. Has nucleoside phosphoramidase and adenylylsulfatase activities.  go_process nucleotide metabolic process|GO:0009117||ISS  go_function adenosine 5 -monophosphoramidase activity|GO:0043530|18694747|IDA  go_function adenylylsulfatase activity|GO:0047627|18694747|IDA  go_function bis(5 -adenosyl)-triphosphatase activity|GO:0047710||ISS  product bis(5 -adenosyl)-triphosphatase, putative  note bis(5 -adenosyl)-triphosphatase, putative; FUNCTIONS IN: adenosine 5 -monophosphoramidase activity, bis(5 -adenosyl)-triphosphatase activity, adenylylsulfatase activity; INVOLVED IN: nucleotide metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histidine triad-like motif (InterPro:IPR011146), Histidine triad (HIT) protein (InterPro:IPR001310), Histidine triad motif (InterPro:IPR011151); Has 3362 Blast hits to 3362 proteins in 936 species: Archae - 139; Bacteria - 1669; Metazoa - 212; Fungi - 133; Plants - 39; Viruses - 0; Other Eukaryotes - 1170 (source: NCBI BLink).  protein_id AT5G58240.1p  transcript_id AT5G58240.1  protein_id AT5G58240.1p  transcript_id AT5G58240.1  
At5g58250	chr5:023559558	0.0	W/23559558-23559767,23559847-23560079,23560180-23560372	AT5G58250.1  CDS  gene_syn MCK7.12, MCK7_12  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 230 Blast hits to 230 proteins in 64 species: Archae - 0; Bacteria - 88; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).  protein_id AT5G58250.1p  transcript_id AT5G58250.1  protein_id AT5G58250.1p  transcript_id AT5G58250.1  
At5g58260	chr5:023561561	0.0	C/23561561-23561929,23561356-23561478	AT5G58260.2  CDS  gene_syn MCK7.13, MCK7_13, NDH-N  function Encodes subunit NDH-N of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15608332|TAS  go_component NAD(P)H dehydrogenase complex (plastoquinone)|GO:0010598|15608332|TAS  go_process NADH dehydrogenase complex (plastoquinone) assembly|GO:0010258|15608332|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: NADH dehydrogenase complex (plastoquinone) assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone); EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 269 Blast hits to 269 proteins in 64 species: Archae - 0; Bacteria - 133; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT5G58260.2p  transcript_id AT5G58260.2  protein_id AT5G58260.2p  transcript_id AT5G58260.2  
At5g58260	chr5:023561561	0.0	C/23561561-23561929,23561362-23561478,23561211-23561296,23561075-23561132	AT5G58260.1  CDS  gene_syn MCK7.13, MCK7_13, NDH-N  function Encodes subunit NDH-N of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15608332|TAS  go_component NAD(P)H dehydrogenase complex (plastoquinone)|GO:0010598|15608332|TAS  go_process NADH dehydrogenase complex (plastoquinone) assembly|GO:0010258|15608332|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: NADH dehydrogenase complex (plastoquinone) assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone), chloroplast envelope; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 284 Blast hits to 284 proteins in 64 species: Archae - 0; Bacteria - 133; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).  protein_id AT5G58260.1p  transcript_id AT5G58260.1  protein_id AT5G58260.1p  transcript_id AT5G58260.1  
At5g58270	chr5:023562168	0.0	W/23562168-23562816,23562894-23562955,23563036-23563079,23563177-23563279,23563426-23563533,23563858-23563941,23564008-23564068,23564341-23564486,23564592-23564708,23564863-23564948,23565243-23565331,23565428-23565483,23565625-23565705,23565954-23566019,23566098-23566190,23566526-23566590,23566685-23566820,23566900-23567040	AT5G58270.1  CDS  gene_syn ABC TRANSPORTER OF THE MITOCHONDRION 3, ARABIDOPSIS THALIANA ABC TRANSPORTER OF THE MITOCHONDRION 3, ATATM3, ATM3, HALF-MOLECULE ABC TRANSPORTER ATM3, MCK7.14, MCK7_14, STA1, STARIK 1  gene STA1  function Encodes a mitochondrial half-molecule ABC transporter, a member of ATM subfamily. Mutants are dwarfed, chlorotic plants with altered leaf morphology. ATM3 transcription is induced by Cd(II) or Pb(II). Involved in heavy metal resistance.  go_component mitochondrion|GO:0005739|15276431|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process response to lead ion|GO:0010288|16461380|IMP  go_process regulation of multicellular organism growth|GO:0040014|11158531|IGI  go_process response to cadmium ion|GO:0046686|16461380|IMP  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product STA1 (STARIK 1); ATPase, coupled to transmembrane movement of substances / transporter  note STARIK 1 (STA1); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: response to lead ion, response to cadmium ion, regulation of multicellular organism growth; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATM1 (ABC TRANSPORTER OF THE MITOCHONDRION); ATPase, coupled to transmembrane movement of substances / transporter (TAIR:AT4G28630.1); Has 248727 Blast hits to 224571 proteins in 2644 species: Archae - 4192; Bacteria - 166225; Metazoa - 8520; Fungi - 4983; Plants - 2730; Viruses - 10; Other Eukaryotes - 62067 (source: NCBI BLink).  protein_id AT5G58270.1p  transcript_id AT5G58270.1  protein_id AT5G58270.1p  transcript_id AT5G58270.1  
At5g58280	chr5:023567338	0.0	W/23567338-23567400,23567578-23567715,23567796-23567860,23567934-23568093,23568189-23568395,23568482-23568670	AT5G58280.1  CDS  gene_syn MCK7.15, MCK7_15  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcriptional factor B3 family protein  note transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT3G19184.1); Has 167 Blast hits to 151 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G58280.1p  transcript_id AT5G58280.1  protein_id AT5G58280.1p  transcript_id AT5G58280.1  
At5g58290	chr5:023569155	0.0	W/23569155-23569619,23569725-23569955,23570038-23570196,23570297-23570449,23570575-23570658,23570982-23571116	AT5G58290.1  CDS  gene_syn 26S PROTEASOME AAA-ATPASE SUBUNIT RPT3, MCK7.16, MCK7_16, REGULATORY PARTICLE TRIPLE-A ATPASE 3, RPT3  gene RPT3  function 26S proteasome AAA-ATPase subunit RPT3 (RPT3) mRNA,  go_component cell wall|GO:0005618|16287169|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component nucleus|GO:0005634|11742986|TAS  go_component proteasome regulatory particle, base subcomplex|GO:0008540|9741626|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_function ATPase activity|GO:0016887|10417703|IGI  go_function ATPase activity|GO:0016887||ISS  product RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3); ATPase  note REGULATORY PARTICLE TRIPLE-A ATPASE 3 (RPT3); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, cell wall, nucleus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: RPT2a (regulatory particle AAA-ATPase 2a); ATPase (TAIR:AT4G29040.1); Has 22606 Blast hits to 20990 proteins in 1795 species: Archae - 853; Bacteria - 6831; Metazoa - 4075; Fungi - 2440; Plants - 1789; Viruses - 35; Other Eukaryotes - 6583 (source: NCBI BLink).  protein_id AT5G58290.1p  transcript_id AT5G58290.1  protein_id AT5G58290.1p  transcript_id AT5G58290.1  
At5g58300	chr5:023572821	0.0	W/23572821-23574153,23574240-23574871	AT5G58300.1  CDS  gene_syn MCK7.17, MCK7_17  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT3G08680.2); Has 89690 Blast hits to 69446 proteins in 1872 species: Archae - 38; Bacteria - 5970; Metazoa - 30225; Fungi - 4600; Plants - 36987; Viruses - 288; Other Eukaryotes - 11582 (source: NCBI BLink).  protein_id AT5G58300.1p  transcript_id AT5G58300.1  protein_id AT5G58300.1p  transcript_id AT5G58300.1  
At5g58300	chr5:023572821	0.0	W/23572821-23574153,23574240-23574871	AT5G58300.2  CDS  gene_syn MCK7.17, MCK7_17  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT3G08680.2); Has 89690 Blast hits to 69446 proteins in 1872 species: Archae - 38; Bacteria - 5970; Metazoa - 30225; Fungi - 4600; Plants - 36987; Viruses - 288; Other Eukaryotes - 11582 (source: NCBI BLink).  protein_id AT5G58300.2p  transcript_id AT5G58300.2  protein_id AT5G58300.2p  transcript_id AT5G58300.2  
At5g58310	chr5:023575498	0.0	C/23575498-23576007,23575127-23575408	AT5G58310.1  CDS  gene_syn ARABIDOPSIS THALIANA METHYL ESTERASE 18, ATMES18, MCK7.18, MCK7_18, MES18, METHYL ESTERASE 18  gene MES18  function Encodes a protein shown to have methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro.  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity|GO:0016787||ISS  go_function hydrolase activity, acting on ester bonds|GO:0016788|18467465|IDA  go_function methyl indole-3-acetate esterase activity|GO:0080030|18467465|IDA  product MES18 (METHYL ESTERASE 18); hydrolase/ hydrolase, acting on ester bonds / methyl indole-3-acetate esterase  note METHYL ESTERASE 18 (MES18); FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on ester bonds, methyl indole-3-acetate esterase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: MES16 (METHYL ESTERASE 16); catalytic/ hydrolase, acting on ester bonds / methyl indole-3-acetate esterase/ methyl jasmonate esterase (TAIR:AT4G16690.1); Has 859 Blast hits to 859 proteins in 205 species: Archae - 0; Bacteria - 382; Metazoa - 4; Fungi - 17; Plants - 331; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).  protein_id AT5G58310.1p  transcript_id AT5G58310.1  protein_id AT5G58310.1p  transcript_id AT5G58310.1  
At5g58320	chr5:023577728	0.0	W/23577728-23577742,23577836-23577947,23578092-23579429,23579529-23579641	AT5G58320.1  CDS  gene_syn MCK7.19, MCK7_19  go_process biological_process|GO:0008150||ND  product kinase interacting protein-related  note kinase interacting protein-related; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: KIP1-like (InterPro:IPR011684); BEST Arabidopsis thaliana protein match is: kinase interacting family protein (TAIR:AT2G30500.1); Has 35088 Blast hits to 20556 proteins in 1155 species: Archae - 481; Bacteria - 2900; Metazoa - 19178; Fungi - 2858; Plants - 1406; Viruses - 153; Other Eukaryotes - 8112 (source: NCBI BLink).  protein_id AT5G58320.1p  transcript_id AT5G58320.1  protein_id AT5G58320.1p  transcript_id AT5G58320.1  
At5g58320	chr5:023577728	0.0	W/23577728-23577742,23577836-23577947,23578092-23579641	AT5G58320.2  CDS  gene_syn MCK7.19, MCK7_19  go_process biological_process|GO:0008150||ND  product kinase interacting protein-related  note kinase interacting protein-related; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: KIP1-like (InterPro:IPR011684); BEST Arabidopsis thaliana protein match is: kinase interacting family protein (TAIR:AT2G30500.1); Has 69975 Blast hits to 35759 proteins in 1556 species: Archae - 869; Bacteria - 6501; Metazoa - 37658; Fungi - 5362; Plants - 2712; Viruses - 265; Other Eukaryotes - 16608 (source: NCBI BLink).  protein_id AT5G58320.2p  transcript_id AT5G58320.2  protein_id AT5G58320.2p  transcript_id AT5G58320.2  
At5g58320	chr5:023578094	0.0	W/23578094-23579429,23579524-23579531	AT5G58320.3  CDS  gene_syn MCK7.19, MCK7_19  go_process biological_process|GO:0008150||ND  product kinase interacting protein-related  note kinase interacting protein-related; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: KIP1-like (InterPro:IPR011684); BEST Arabidopsis thaliana protein match is: kinase interacting family protein (TAIR:AT2G30500.1); Has 34075 Blast hits to 19879 proteins in 1124 species: Archae - 485; Bacteria - 2782; Metazoa - 18554; Fungi - 2832; Plants - 1331; Viruses - 150; Other Eukaryotes - 7941 (source: NCBI BLink).  protein_id AT5G58320.3p  transcript_id AT5G58320.3  protein_id AT5G58320.3p  transcript_id AT5G58320.3  
At5g58330	chr5:023581725	0.0	C/23581725-23581751,23581297-23581634,23581116-23581206,23580965-23581039,23580782-23580883,23580573-23580695,23580421-23580489,23580284-23580352,23580148-23580201,23580010-23580066	AT5G58330.3  CDS  gene_syn MCK7.20, MCK7_20  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process glycolysis|GO:0006096||IEA  go_process malate metabolic process|GO:0006108||IEA  go_process metabolic process|GO:0008152||IEA  go_process cellular carbohydrate metabolic process|GO:0044262||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function malate dehydrogenase activity|GO:0016615||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_function malate dehydrogenase (NADP+) activity|GO:0046554||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function malate dehydrogenase activity|GO:0016615||ISS  product malate dehydrogenase (NADP), chloroplast, putative  note malate dehydrogenase (NADP), chloroplast, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: cellular carbohydrate metabolic process, glycolysis, malate metabolic process, carbohydrate metabolic process, metabolic process; LOCATED IN: thylakoid, mitochondrion, apoplast, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Malate dehydrogenase, NAD or NADP (InterPro:IPR010945), Malate dehydrogenase, NADP-dependent, plants (InterPro:IPR011273), NAD(P)-binding (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Lactate/malate dehydrogenase (InterPro:IPR001236), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: malate dehydrogenase, cytosolic, putative (TAIR:AT5G56720.1); Has 6476 Blast hits to 6476 proteins in 1471 species: Archae - 77; Bacteria - 3508; Metazoa - 435; Fungi - 103; Plants - 377; Viruses - 0; Other Eukaryotes - 1976 (source: NCBI BLink).  protein_id AT5G58330.3p  transcript_id AT5G58330.3  protein_id AT5G58330.3p  transcript_id AT5G58330.3  
At5g58330	chr5:023582115	0.0	C/23582115-23582287,23581930-23582020,23581725-23581811,23581297-23581634,23581116-23581206,23580965-23581039,23580782-23580883,23580573-23580695,23580421-23580489,23580284-23580352,23580148-23580201,23580010-23580066	AT5G58330.2  CDS  gene_syn MCK7.20, MCK7_20  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process malate metabolic process|GO:0006108||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function malate dehydrogenase activity|GO:0016615||IEA  go_function malate dehydrogenase (NADP+) activity|GO:0046554||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function malate dehydrogenase activity|GO:0016615||ISS  product malate dehydrogenase (NADP), chloroplast, putative  note malate dehydrogenase (NADP), chloroplast, putative; FUNCTIONS IN: oxidoreductase activity, malate dehydrogenase activity, binding, catalytic activity, malate dehydrogenase (NADP+) activity; INVOLVED IN: malate metabolic process, carbohydrate metabolic process, metabolic process; LOCATED IN: thylakoid, mitochondrion, apoplast, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Malate dehydrogenase, NAD or NADP (InterPro:IPR010945), Malate dehydrogenase, NADP-dependent, plants (InterPro:IPR011273), NAD(P)-binding (InterPro:IPR016040), Lactate/malate dehydrogenase (InterPro:IPR001236), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: malate dehydrogenase, cytosolic, putative (TAIR:AT5G56720.1); Has 6543 Blast hits to 6543 proteins in 1476 species: Archae - 77; Bacteria - 3514; Metazoa - 459; Fungi - 108; Plants - 380; Viruses - 0; Other Eukaryotes - 2005 (source: NCBI BLink).  protein_id AT5G58330.2p  transcript_id AT5G58330.2  protein_id AT5G58330.2p  transcript_id AT5G58330.2  
At5g58330	chr5:023582115	0.0	C/23582115-23582287,23581930-23582023,23581725-23581811,23581297-23581634,23581116-23581206,23580965-23581039,23580782-23580883,23580573-23580695,23580421-23580489,23580284-23580352,23580148-23580201,23580010-23580066	AT5G58330.1  CDS  gene_syn MCK7.20, MCK7_20  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process malate metabolic process|GO:0006108||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function malate dehydrogenase activity|GO:0016615||IEA  go_function malate dehydrogenase (NADP+) activity|GO:0046554||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function malate dehydrogenase activity|GO:0016615||ISS  product malate dehydrogenase (NADP), chloroplast, putative  note malate dehydrogenase (NADP), chloroplast, putative; FUNCTIONS IN: oxidoreductase activity, binding, malate dehydrogenase activity, catalytic activity, malate dehydrogenase (NADP+) activity; INVOLVED IN: malate metabolic process, carbohydrate metabolic process, metabolic process; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Malate dehydrogenase, NAD or NADP (InterPro:IPR010945), Malate dehydrogenase, NADP-dependent, plants (InterPro:IPR011273), NAD(P)-binding (InterPro:IPR016040), Lactate/malate dehydrogenase (InterPro:IPR001236), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: malate dehydrogenase, cytosolic, putative (TAIR:AT5G56720.1); Has 6543 Blast hits to 6543 proteins in 1476 species: Archae - 77; Bacteria - 3514; Metazoa - 459; Fungi - 108; Plants - 380; Viruses - 0; Other Eukaryotes - 2005 (source: NCBI BLink).  protein_id AT5G58330.1p  transcript_id AT5G58330.1  protein_id AT5G58330.1p  transcript_id AT5G58330.1  
At5g58340	chr5:023582607	0.0	W/23582607-23583656,23583743-23583933,23584049-23584112,23584204-23584245	AT5G58340.1  CDS  gene_syn MCK7.21, MCK7_21  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||IEA  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRFL5 (TRF-LIKE 5); DNA binding / transcription factor (TAIR:AT1G15720.1); Has 281 Blast hits to 279 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 51; Fungi - 13; Plants - 202; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT5G58340.1p  transcript_id AT5G58340.1  protein_id AT5G58340.1p  transcript_id AT5G58340.1  
At5g58350	chr5:023585505	0.0	W/23585505-23585564,23585639-23585904,23585982-23586205,23586283-23586440,23586520-23586829,23586900-23587199,23587284-23587681	AT5G58350.1  CDS  gene_syn MCK7.22, MCK7_22, WITH NO K (=LYSINE) 4, WNK4, ZIK2  gene WNK4  function Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its transcription is under the control of circadian rhythms.  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process protein amino acid phosphorylation|GO:0006468|12506983|TAS  go_function protein kinase activity|GO:0004672|12506983|TAS  go_function kinase activity|GO:0016301||ISS  product WNK4 (WITH NO K (=LYSINE) 4); kinase/ protein kinase  note WITH NO K (=LYSINE) 4 (WNK4); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: WNK5 (WITH NO LYSINE (K) KINASE 5); protein kinase (TAIR:AT3G51630.1); Has 75432 Blast hits to 74628 proteins in 2304 species: Archae - 34; Bacteria - 5799; Metazoa - 31816; Fungi - 6673; Plants - 16517; Viruses - 375; Other Eukaryotes - 14218 (source: NCBI BLink).  protein_id AT5G58350.1p  transcript_id AT5G58350.1  protein_id AT5G58350.1p  transcript_id AT5G58350.1  
At5g58360	chr5:023590079	0.0	C/23590079-23590969	AT5G58360.1  CDS  gene_syn ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 3, ATOFP3, MCK7.23, MCK7_23, OFP3  gene ATOFP3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product ATOFP3  note ATOFP3; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623, plant (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: OFP2 (OVATE FAMILY PROTEIN 2) (TAIR:AT2G30400.1); Has 591 Blast hits to 378 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 120; Fungi - 18; Plants - 223; Viruses - 0; Other Eukaryotes - 230 (source: NCBI BLink).  protein_id AT5G58360.1p  transcript_id AT5G58360.1  protein_id AT5G58360.1p  transcript_id AT5G58360.1  
At5g58370	chr5:023593358	0.0	W/23593358-23593916,23594002-23594117,23594198-23594317,23594415-23594502,23594655-23594746,23594823-23594927,23595038-23595147,23595227-23595314,23595423-23595458,23595539-23595565	AT5G58370.1  CDS  gene_syn MCK7.24, MCK7_24  go_component intracellular|GO:0005622||IEA  go_function GTP binding|GO:0005525||IEA  product GTP binding  note GTP binding; FUNCTIONS IN: GTP binding; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding (InterPro:IPR005289), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: GTP binding (TAIR:AT5G11480.1); Has 5356 Blast hits to 5263 proteins in 1342 species: Archae - 75; Bacteria - 3732; Metazoa - 67; Fungi - 76; Plants - 73; Viruses - 0; Other Eukaryotes - 1333 (source: NCBI BLink).  protein_id AT5G58370.1p  transcript_id AT5G58370.1  protein_id AT5G58370.1p  transcript_id AT5G58370.1  
At5g58370	chr5:023593358	0.0	W/23593358-23593916,23594002-23594117,23594198-23594317,23594415-23594502,23594655-23594746,23594823-23594927,23595038-23595147,23595227-23595314,23595423-23595458,23595562-23595645	AT5G58370.2  CDS  gene_syn MCK7.24, MCK7_24  go_component intracellular|GO:0005622||IEA  go_function GTP binding|GO:0005525||IEA  product GTP binding  note GTP binding; FUNCTIONS IN: GTP binding; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding (InterPro:IPR005289), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: EMB2001 (embryo defective 2001); GTP binding (TAIR:AT2G22870.1); Has 6316 Blast hits to 6058 proteins in 1407 species: Archae - 101; Bacteria - 4558; Metazoa - 67; Fungi - 76; Plants - 70; Viruses - 0; Other Eukaryotes - 1444 (source: NCBI BLink).  protein_id AT5G58370.2p  transcript_id AT5G58370.2  protein_id AT5G58370.2p  transcript_id AT5G58370.2  
At5g58375	chr5:023596369	0.0	W/23596369-23596524,23596604-23596705	AT5G58375.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G14602.1); Has 28 Blast hits to 28 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G58375.1p  transcript_id AT5G58375.1  protein_id AT5G58375.1p  transcript_id AT5G58375.1  
At5g58380	chr5:023597092	0.0	C/23597092-23598531	AT5G58380.1  CDS  gene_syn CBL-INTERACTING PROTEIN KINASE 10, CIPK10, MCK7.25, MCK7_25, PKS2, SIP1, SNF1-RELATED PROTEIN KINASE 3.8, SNRK3.8, SOS3-INTERACTING PROTEIN 1  gene SIP1  function Encodes a CBL-interacting protein kinase with similarity to SOS protein kinase.  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product SIP1 (SOS3-INTERACTING PROTEIN 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note SOS3-INTERACTING PROTEIN 1 (SIP1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: signal transduction, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CIPK2 (CBL-INTERACTING PROTEIN KINASE 2); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G07070.1); Has 95222 Blast hits to 93682 proteins in 3089 species: Archae - 70; Bacteria - 8484; Metazoa - 41128; Fungi - 8553; Plants - 18221; Viruses - 486; Other Eukaryotes - 18280 (source: NCBI BLink).  protein_id AT5G58380.1p  transcript_id AT5G58380.1  protein_id AT5G58380.1p  transcript_id AT5G58380.1  
At5g58390	chr5:023601047	0.0	C/23601047-23601244,23600757-23600948,23599755-23600315	AT5G58390.1  CDS  gene_syn MCK7.26, MCK7_26  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT5G58400.1); Has 2891 Blast hits to 2875 proteins in 212 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 66; Plants - 2777; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT5G58390.1p  transcript_id AT5G58390.1  protein_id AT5G58390.1p  transcript_id AT5G58390.1  
At5g58400	chr5:023606743	0.0	C/23606743-23606967,23606412-23606603,23605357-23605917	AT5G58400.1  CDS  gene_syn MCK7.27, MCK7_27  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT5G58390.1); Has 2834 Blast hits to 2818 proteins in 183 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 33; Plants - 2767; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT5G58400.1p  transcript_id AT5G58400.1  protein_id AT5G58400.1p  transcript_id AT5G58400.1  
At5g58410	chr5:023609663	0.0	W/23609663-23609718,23609833-23609947,23610013-23610075,23610154-23610231,23610574-23610665,23611016-23611157,23611308-23611460,23611550-23612644,23612742-23613244,23613367-23614733,23615026-23616065,23616151-23616609,23616709-23616939,23617116-23617343	AT5G58410.1  CDS  gene_syn MCK7.28, MCK7_28  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product binding / protein binding / zinc ion binding  note binding / protein binding / zinc ion binding; FUNCTIONS IN: protein binding, binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Armadillo-type fold (InterPro:IPR016024); Has 531 Blast hits to 394 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 226; Fungi - 140; Plants - 48; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).  protein_id AT5G58410.1p  transcript_id AT5G58410.1  protein_id AT5G58410.1p  transcript_id AT5G58410.1  
At5g58412	chr5:023618109	0.0	W/23618109-23618345	AT5G58412.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26717.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G58412.1p  transcript_id AT5G58412.1  protein_id AT5G58412.1p  transcript_id AT5G58412.1  
At5g58420	chr5:023619599	0.0	W/23619599-23619601,23619909-23619986,23620090-23620368,23620468-23620896	AT5G58420.1  CDS  gene_syn MQJ2.1, MQJ2_1  go_component nucleolus|GO:0005730|15496452|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S4 (RPS4D)  note 40S ribosomal protein S4 (RPS4D); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S4e, central (InterPro:IPR013845), Ribosomal protein S4e, N-terminal, conserved site (InterPro:IPR018199), KOW (InterPro:IPR005824), RNA-binding S4 (InterPro:IPR002942), Ribosomal protein S4e, N-terminal (InterPro:IPR013843), Ribosomal protein S4e (InterPro:IPR000876); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S4 (RPS4B) (TAIR:AT5G07090.1); Has 941 Blast hits to 941 proteins in 319 species: Archae - 166; Bacteria - 0; Metazoa - 329; Fungi - 122; Plants - 101; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).  protein_id AT5G58420.1p  transcript_id AT5G58420.1  protein_id AT5G58420.1p  transcript_id AT5G58420.1  
At5g58430	chr5:023621460	0.0	C/23621460-23623334	AT5G58430.1  CDS  gene_syn ATEXO70B1, MQJ2.2, MQJ2_2, exocyst subunit EXO70 family protein B1  gene ATEXO70B1  function A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process exocytosis|GO:0006887||IEA  go_component exocyst|GO:0000145||ISS  go_process vesicle docking during exocytosis|GO:0006904||ISS  go_function protein binding|GO:0005515||ISS  product ATEXO70B1 (exocyst subunit EXO70 family protein B1); protein binding  note exocyst subunit EXO70 family protein B1 (ATEXO70B1); FUNCTIONS IN: protein binding; INVOLVED IN: exocytosis, vesicle docking during exocytosis; LOCATED IN: plasma membrane, exocyst; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: ATEXO70B2 (exocyst subunit EXO70 family protein B2); protein binding (TAIR:AT1G07000.1); Has 570 Blast hits to 568 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 77; Plants - 378; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G58430.1p  transcript_id AT5G58430.1  protein_id AT5G58430.1p  transcript_id AT5G58430.1  
At5g58440	chr5:023625558	0.0	C/23625558-23626676,23625253-23625462,23624735-23624995,23624549-23624635,23624154-23624240	AT5G58440.1  CDS  gene_syn MQJ2.4, MQJ2_4, SNX2a, SORTING NEXIN 2a  gene SNX2a  go_component cellular_component|GO:0005575||ND  go_process signal transduction|GO:0007165|15358268|ISS  go_process intracellular signaling cascade|GO:0007242||ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product SNX2a (SORTING NEXIN 2a); phosphoinositide binding  note SORTING NEXIN 2a (SNX2a); FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction, intracellular signaling cascade; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vps5 C-terminal (InterPro:IPR015404), Phox-like (InterPro:IPR001683); BEST Arabidopsis thaliana protein match is: SNX2b (SORTING NEXIN 2b); phosphoinositide binding / protein binding (TAIR:AT5G07120.1); Has 1775 Blast hits to 1763 proteins in 175 species: Archae - 7; Bacteria - 6; Metazoa - 1144; Fungi - 391; Plants - 81; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).  protein_id AT5G58440.1p  transcript_id AT5G58440.1  protein_id AT5G58440.1p  transcript_id AT5G58440.1  
At5g58450	chr5:023626826	0.0	W/23626826-23626877,23626954-23626970,23627094-23627360,23627450-23627606,23627692-23627810,23627895-23627969,23628048-23628141,23628235-23628353,23628551-23628621,23628775-23628916,23629025-23629200,23629301-23629500,23629656-23629786,23629874-23629950,23630052-23630126,23630220-23630412,23630509-23630628,23630723-23630861,23630935-23630978,23631056-23631310,23631397-23632071	AT5G58450.1  CDS  gene_syn MQJ2.5, MQJ2_5  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); Has 440 Blast hits to 439 proteins in 118 species: Archae - 0; Bacteria - 6; Metazoa - 260; Fungi - 102; Plants - 34; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT5G58450.1p  transcript_id AT5G58450.1  protein_id AT5G58450.1p  transcript_id AT5G58450.1  
At5g58460	chr5:023634741	0.0	C/23634741-23635037,23632361-23634637	AT5G58460.1  CDS  gene_syn ATCHX25, CATION/H+ EXCHANGER 25, CHX25, MQJ2.3, MQJ2_3  gene ATCHX25  function member of Putative Na+/H+ antiporter family  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|IC  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product ATCHX25; monovalent cation:proton antiporter/ sodium:hydrogen antiporter  note ATCHX25; FUNCTIONS IN: monovalent cation:proton antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: ATCHX24; monovalent cation:proton antiporter/ sodium:hydrogen antiporter (TAIR:AT5G37060.1); Has 2881 Blast hits to 2869 proteins in 836 species: Archae - 125; Bacteria - 2173; Metazoa - 0; Fungi - 90; Plants - 235; Viruses - 0; Other Eukaryotes - 258 (source: NCBI BLink).  protein_id AT5G58460.1p  transcript_id AT5G58460.1  protein_id AT5G58460.1p  transcript_id AT5G58460.1  
At5g58465	chr5:023636947	0.0	W/23636947-23637066	AT5G58465.1  miRNA  gene_syn MICRORNA 390, MICRORNA390B, MIR390, MIR390B  gene MIR390B  function Encodes a microRNA that targets the TAS3 family of tasiRNA-generating transcripts. Cleavage of TAS3 transcripts by miR390 initiates processing of these transcripts in a 21-nucleotide register. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: AAGCUCAGGAGGGAUAGCGCC  go_process gene silencing by miRNA|GO:0035195|15851028|IDA  product MIR390B (MICRORNA390B); miRNA  transcript_id AT5G58465.1  
At5g58470	chr5:023640668	0.0	C/23640668-23640854,23640444-23640537,23639688-23640321,23639398-23639548,23639240-23639318,23638566-23638689	AT5G58470.1  CDS  gene_syn MQJ2.7, MQJ2_7, TAF15b, TBP-ASSOCIATED FACTOR 15b  gene TAF15b  go_component chloroplast|GO:0009507|18431481|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function binding|GO:0005488||ISS  product TAF15b (TBP-ASSOCIATED FACTOR 15b); binding / nucleic acid binding / nucleotide binding / zinc ion binding  note TBP-ASSOCIATED FACTOR 15b (TAF15b); FUNCTIONS IN: binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: TAF15 (TBP-associated factor 15); RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding (TAIR:AT1G50300.1); Has 103671 Blast hits to 38365 proteins in 1755 species: Archae - 146; Bacteria - 22672; Metazoa - 41151; Fungi - 8329; Plants - 11076; Viruses - 1321; Other Eukaryotes - 18976 (source: NCBI BLink).  protein_id AT5G58470.1p  transcript_id AT5G58470.1  protein_id AT5G58470.1p  transcript_id AT5G58470.1  
At5g58470	chr5:023640668	0.0	C/23640668-23640854,23640444-23640537,23639688-23640321,23639398-23639548,23639240-23639318,23638566-23638689	AT5G58470.2  CDS  gene_syn MQJ2.7, MQJ2_7, TAF15b, TBP-ASSOCIATED FACTOR 15b  gene TAF15b  go_component chloroplast|GO:0009507|18431481|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function binding|GO:0005488||ISS  product TAF15b (TBP-ASSOCIATED FACTOR 15b); binding / nucleic acid binding / nucleotide binding / zinc ion binding  note TBP-ASSOCIATED FACTOR 15b (TAF15b); FUNCTIONS IN: binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: TAF15 (TBP-associated factor 15); RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding (TAIR:AT1G50300.1); Has 103671 Blast hits to 38365 proteins in 1755 species: Archae - 146; Bacteria - 22672; Metazoa - 41151; Fungi - 8329; Plants - 11076; Viruses - 1321; Other Eukaryotes - 18976 (source: NCBI BLink).  protein_id AT5G58470.2p  transcript_id AT5G58470.2  protein_id AT5G58470.2p  transcript_id AT5G58470.2  
At5g58480	chr5:023642483	0.0	C/23642483-23642826,23641227-23642313	AT5G58480.1  CDS  gene_syn MQJ2.10, MQJ2_10  go_component plasma membrane|GO:0005886|17317660|IDA  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT4G17180.1); Has 1660 Blast hits to 1608 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 14; Plants - 1640; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G58480.1p  transcript_id AT5G58480.1  protein_id AT5G58480.1p  transcript_id AT5G58480.1  
At5g58490	chr5:023643068	0.0	W/23643068-23643188,23643271-23643443,23643525-23643710,23643793-23643955,23644042-23644228,23644311-23644455	AT5G58490.1  CDS  gene_syn MQJ2.6, MQJ2_6  go_process steroid biosynthetic process|GO:0006694||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function 3-beta-hydroxy-delta5-steroid dehydrogenase activity|GO:0003854||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process lignin biosynthetic process|GO:0009809||ISS  go_function cinnamoyl-CoA reductase activity|GO:0016621||ISS  product cinnamoyl-CoA reductase family  note cinnamoyl-CoA reductase family; FUNCTIONS IN: 3-beta-hydroxy-delta5-steroid dehydrogenase activity, binding, cinnamoyl-CoA reductase activity, catalytic activity; INVOLVED IN: lignin biosynthetic process, steroid biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 3-beta hydroxysteroid dehydrogenase/isomerase (InterPro:IPR002225), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamoyl-CoA reductase family (TAIR:AT2G02400.1); Has 8253 Blast hits to 8243 proteins in 1158 species: Archae - 140; Bacteria - 2986; Metazoa - 418; Fungi - 574; Plants - 1442; Viruses - 7; Other Eukaryotes - 2686 (source: NCBI BLink).  protein_id AT5G58490.1p  transcript_id AT5G58490.1  protein_id AT5G58490.1p  transcript_id AT5G58490.1  
At5g58495	chr5:023644711	0.0	W/23644711-23644792	AT5G58495.1  tRNA  gene_syn 67883.TRNA-SER-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: CGA)  transcript_id AT5G58495.1  
At5g58500	chr5:023645535	0.0	C/23645535-23646083	AT5G58500.1  CDS  gene_syn LIGHT SENSITIVE HYPOCOTYLS 5, LSH5, MQJ2.11, MQJ2_11  gene LSH5  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product LSH5 (LIGHT SENSITIVE HYPOCOTYLS 5)  note LIGHT SENSITIVE HYPOCOTYLS 5 (LSH5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: LSH6 (LIGHT SENSITIVE HYPOCOTYLS 6) (TAIR:AT1G07090.1); Has 185 Blast hits to 185 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G58500.1p  transcript_id AT5G58500.1  protein_id AT5G58500.1p  transcript_id AT5G58500.1  
At5g58510	chr5:023654365	0.0	C/23654365-23654421,23654236-23654279,23654100-23654163,23653743-23653869,23653595-23653662,23653406-23653503,23653006-23653177,23652619-23652850,23651954-23652080,23651735-23651844,23651455-23651547,23651094-23651222,23650814-23650947,23650644-23650739,23650421-23650488,23650155-23650323,23650011-23650082,23649712-23649751,23649251-23649528,23649000-23649177,23648688-23648905,23648287-23648604	AT5G58510.1  CDS  gene_syn MQJ2.13, MQJ2_13  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55060.1); Has 187 Blast hits to 170 proteins in 57 species: Archae - 0; Bacteria - 2; Metazoa - 119; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT5G58510.1p  transcript_id AT5G58510.1  protein_id AT5G58510.1p  transcript_id AT5G58510.1  
At5g58520	chr5:023655312	0.0	W/23655312-23655760,23655877-23656957,23657659-23657943	AT5G58520.1  CDS  gene_syn MQJ2.14, MQJ2_14  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G07140.1); Has 45706 Blast hits to 45388 proteins in 1342 species: Archae - 26; Bacteria - 2714; Metazoa - 22323; Fungi - 3081; Plants - 10382; Viruses - 278; Other Eukaryotes - 6902 (source: NCBI BLink).  protein_id AT5G58520.1p  transcript_id AT5G58520.1  protein_id AT5G58520.1p  transcript_id AT5G58520.1  
At5g58530	chr5:023660428	0.0	W/23660428-23661249	AT5G58530.1  CDS  gene_syn MQJ2.15, MQJ2_15  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  product glutaredoxin family protein  note glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin family protein (TAIR:AT5G13810.1); Has 402 Blast hits to 402 proteins in 64 species: Archae - 0; Bacteria - 11; Metazoa - 94; Fungi - 2; Plants - 205; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT5G58530.1p  transcript_id AT5G58530.1  protein_id AT5G58530.1p  transcript_id AT5G58530.1  
At5g58540	chr5:023663400	0.0	W/23663400-23663490,23663568-23664038,23664123-23664313,23664393-23664525,23664614-23665182	AT5G58540.1  CDS  gene_syn MQJ2.16, MQJ2_16  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT5G07150.1); Has 34482 Blast hits to 26484 proteins in 1043 species: Archae - 87; Bacteria - 3476; Metazoa - 8901; Fungi - 1431; Plants - 15911; Viruses - 1031; Other Eukaryotes - 3645 (source: NCBI BLink).  protein_id AT5G58540.1p  transcript_id AT5G58540.1  protein_id AT5G58540.1p  transcript_id AT5G58540.1  
At5g58540	chr5:023663400	0.0	W/23663400-23663490,23663577-23664038,23664123-23664313,23664393-23664525,23664614-23665182	AT5G58540.2  CDS  gene_syn MQJ2.16, MQJ2_16  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT5G07150.1); Has 34458 Blast hits to 26488 proteins in 1045 species: Archae - 87; Bacteria - 3470; Metazoa - 8896; Fungi - 1421; Plants - 15902; Viruses - 1028; Other Eukaryotes - 3654 (source: NCBI BLink).  protein_id AT5G58540.2p  transcript_id AT5G58540.2  protein_id AT5G58540.2p  transcript_id AT5G58540.2  
At5g58540	chr5:023663906	0.0	W/23663906-23664038,23664123-23664313,23664393-23664525,23664614-23665182	AT5G58540.3  CDS  gene_syn MQJ2.16, MQJ2_16  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT5G07150.1); Has 20046 Blast hits to 19837 proteins in 653 species: Archae - 2; Bacteria - 494; Metazoa - 5713; Fungi - 289; Plants - 12233; Viruses - 92; Other Eukaryotes - 1223 (source: NCBI BLink).  protein_id AT5G58540.3p  transcript_id AT5G58540.3  protein_id AT5G58540.3p  transcript_id AT5G58540.3  
At5g58550	chr5:023666550	0.0	C/23666550-23668474,23666167-23666458,23665777-23666086,23665451-23665701	AT5G58550.1  CDS  gene_syn EOL2, ETO1-LIKE 2, MZN1.1  gene EOL2  function Encodes a paralog of ETO1, which is a negative regulator of ACS5 (a key enzyme in ethylene biosynthesis pathway). EOL2 also interacts with and inhibits the activity of ACS5.  go_process regulation of ethylene biosynthetic process|GO:0010364|18808454|IGI  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_process regulation of ethylene biosynthetic process|GO:0010364|15118728|IDA  product EOL2 (ETO1-LIKE 2); binding / protein binding  note ETO1-LIKE 2 (EOL2); FUNCTIONS IN: protein binding, binding; INVOLVED IN: regulation of ethylene biosynthetic process; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide-like helical (InterPro:IPR011990), BTB/POZ fold (InterPro:IPR011333), Tetratricopeptide region (InterPro:IPR013026), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: ETO1 (ETHYLENE OVERPRODUCER 1); protein binding, bridging (TAIR:AT3G51770.2); Has 1629 Blast hits to 1317 proteins in 255 species: Archae - 71; Bacteria - 608; Metazoa - 257; Fungi - 2; Plants - 105; Viruses - 0; Other Eukaryotes - 586 (source: NCBI BLink).  protein_id AT5G58550.1p  transcript_id AT5G58550.1  protein_id AT5G58550.1p  transcript_id AT5G58550.1  
At5g58560	chr5:023670513	0.0	W/23670513-23670827,23671631-23671698,23671785-23671916,23672056-23672171,23672278-23672570	AT5G58560.1  CDS  gene_syn MZN1.8, MZN1_8  go_component membrane|GO:0016020||IEA  go_function transferase activity, transferring phosphorus-containing groups|GO:0016772||IEA  go_component membrane|GO:0016020||ISS  go_process phospholipid biosynthetic process|GO:0008654||ISS  go_function phosphatidate cytidylyltransferase activity|GO:0004605||ISS  product phosphatidate cytidylyltransferase family protein  note phosphatidate cytidylyltransferase family protein; FUNCTIONS IN: phosphatidate cytidylyltransferase activity, transferase activity, transferring phosphorus-containing groups; INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidate cytidylyltransferase (InterPro:IPR000374); BEST Arabidopsis thaliana protein match is: VTE5 (vitamin E pathway gene5); phosphatidate cytidylyltransferase/ phytol kinase (TAIR:AT5G04490.1); Has 383 Blast hits to 383 proteins in 126 species: Archae - 22; Bacteria - 164; Metazoa - 0; Fungi - 29; Plants - 70; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT5G58560.1p  transcript_id AT5G58560.1  protein_id AT5G58560.1p  transcript_id AT5G58560.1  
At5g58570	chr5:023672870	0.0	C/23672870-23673130	AT5G58570.1  CDS  gene_syn MZN1.2, MZN1_2  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G58570.1p  transcript_id AT5G58570.1  protein_id AT5G58570.1p  transcript_id AT5G58570.1  
At5g58575	chr5:023674399	0.0	W/23674399-23674437,23674604-23674915,23675030-23675224	AT5G58575.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Sgf11, transcriptional regulation (InterPro:IPR013246); Has 148 Blast hits to 148 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 32; Plants - 16; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G58575.1p  transcript_id AT5G58575.1  protein_id AT5G58575.1p  transcript_id AT5G58575.1  
At5g58580	chr5:023676906	0.0	C/23676906-23677832	AT5G58580.1  CDS  gene_syn ARABIDOPSIS TO& 769;XICOS EN LEVADURA, ATL63, MZN1.3, MZN1_3  gene ATL63  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product ATL63 (ARABIDOPSIS TO& 769;XICOS EN LEVADURA); protein binding / zinc ion binding  note ARABIDOPSIS TO& 769;XICOS EN LEVADURA (ATL63); FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: MEE16 (maternal effect embryo arrest 16); protein binding / zinc ion binding (TAIR:AT2G18650.1); Has 5825 Blast hits to 5808 proteins in 222 species: Archae - 0; Bacteria - 2; Metazoa - 1910; Fungi - 462; Plants - 2583; Viruses - 42; Other Eukaryotes - 826 (source: NCBI BLink).  protein_id AT5G58580.1p  transcript_id AT5G58580.1  protein_id AT5G58580.1p  transcript_id AT5G58580.1  
At5g58590	chr5:023681563	0.0	C/23681563-23681714,23681282-23681433,23681069-23681194,23680319-23680548	AT5G58590.1  CDS  gene_syn MZN1.4, MZN1_4, RAN BINDING PROTEIN 1, RANBP1  gene RANBP1  function Encodes a Ran-binding protein 1 homolog (RanBP1).  go_component cellular_component|GO:0005575||ND  go_process protein import into nucleus, translocation|GO:0000060|9025305|TAS  go_function protein binding|GO:0005515|9025305|IPI  product RANBP1 (RAN BINDING PROTEIN 1); protein binding  note RAN BINDING PROTEIN 1 (RANBP1); FUNCTIONS IN: protein binding; INVOLVED IN: protein import into nucleus, translocation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ran Binding Protein 1 (InterPro:IPR000156), Pleckstrin homology-type (InterPro:IPR011993); BEST Arabidopsis thaliana protein match is: SIRANBP; Ran GTPase binding (TAIR:AT1G07140.1); Has 1222 Blast hits to 947 proteins in 175 species: Archae - 0; Bacteria - 6; Metazoa - 721; Fungi - 236; Plants - 92; Viruses - 15; Other Eukaryotes - 152 (source: NCBI BLink).  protein_id AT5G58590.1p  transcript_id AT5G58590.1  protein_id AT5G58590.1p  transcript_id AT5G58590.1  
At5g58595	chr5:023682880	0.0	C/23682880-23682963	AT5G58595.1  snoRNA  gene_syn 67884.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT5G58595.1  
At5g58600	chr5:023685318	0.0	C/23685318-23685679,23684869-23685040,23684608-23684786,23684372-23684534	AT5G58600.2  CDS  gene_syn MZN1.6, MZN1_6, PMR5, POWDERY MILDEW RESISTANT 5  gene PMR5  function Belongs to a large family of plant-specific genes of unknown function. Involved in resistance to the powdery mildew species Erysiphe cichoracearum and Erysiphe orontii, but not to the unrelated pathogens Pseudomonas syringae or Peronospora parasitica.  go_component endoplasmic reticulum|GO:0005783|15584961|ISS  go_process response to fungus|GO:0009620|15584961|IMP  go_function molecular_function|GO:0003674||ND  product PMR5 (POWDERY MILDEW RESISTANT 5)  note POWDERY MILDEW RESISTANT 5 (PMR5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to fungus; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30010.1); Has 679 Blast hits to 672 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 679; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G58600.2p  transcript_id AT5G58600.2  protein_id AT5G58600.2p  transcript_id AT5G58600.2  
At5g58600	chr5:023685318	0.0	C/23685318-23685679,23684869-23685040,23684608-23684786,23684376-23684534,23683944-23684280	AT5G58600.1  CDS  gene_syn MZN1.6, MZN1_6, PMR5, POWDERY MILDEW RESISTANT 5  gene PMR5  function Belongs to a large family of plant-specific genes of unknown function. Involved in resistance to the powdery mildew species Erysiphe cichoracearum and Erysiphe orontii, but not to the unrelated pathogens Pseudomonas syringae or Peronospora parasitica.  go_component endoplasmic reticulum|GO:0005783|15584961|ISS  go_process response to fungus|GO:0009620|15584961|IMP  go_function molecular_function|GO:0003674||ND  product PMR5 (POWDERY MILDEW RESISTANT 5)  note POWDERY MILDEW RESISTANT 5 (PMR5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to fungus; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30010.1); Has 710 Blast hits to 698 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 710; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G58600.1p  transcript_id AT5G58600.1  protein_id AT5G58600.1p  transcript_id AT5G58600.1  
At5g58610	chr5:023690977	0.0	C/23690977-23691053,23688657-23690751,23688432-23688561,23688252-23688343,23687845-23688011,23687665-23687751,23687460-23687559,23687143-23687350,23686771-23687012	AT5G58610.1  CDS  gene_syn MZN1.7, MZN1_7  go_component endomembrane system|GO:0012505||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function RNA binding|GO:0003723||IEA  go_function protein binding|GO:0005515||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to chitin|GO:0010200|17722694|IEP  go_function DNA binding|GO:0003677||ISS  product PHD finger transcription factor, putative  note PHD finger transcription factor, putative; FUNCTIONS IN: protein binding, RNA binding, DNA binding, zinc ion binding, N-acetyltransferase activity; INVOLVED IN: N-terminal protein myristoylation, response to chitin, regulation of transcription, DNA-dependent; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Zinc finger, PHD-type (InterPro:IPR001965), Acyl-CoA N-acyltransferase (InterPro:IPR016181), Agenet (InterPro:IPR008395), Tudor-like, plant (InterPro:IPR014002), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT1G05380.2); Has 3527 Blast hits to 2956 proteins in 154 species: Archae - 0; Bacteria - 0; Metazoa - 2672; Fungi - 258; Plants - 395; Viruses - 0; Other Eukaryotes - 202 (source: NCBI BLink).  protein_id AT5G58610.1p  transcript_id AT5G58610.1  protein_id AT5G58610.1p  transcript_id AT5G58610.1  
At5g58620	chr5:023693959	0.0	W/23693959-23695782	AT5G58620.1  CDS  gene_syn MZN1.16, MZN1_16  go_component endomembrane system|GO:0012505||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product zinc finger (CCCH-type) family protein  note zinc finger (CCCH-type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: CZF1; transcription factor (TAIR:AT2G40140.2); Has 1042 Blast hits to 931 proteins in 135 species: Archae - 2; Bacteria - 22; Metazoa - 445; Fungi - 36; Plants - 244; Viruses - 9; Other Eukaryotes - 284 (source: NCBI BLink).  protein_id AT5G58620.1p  transcript_id AT5G58620.1  protein_id AT5G58620.1p  transcript_id AT5G58620.1  
At5g58630	chr5:023696528	0.0	C/23696528-23697335,23696141-23696451	AT5G58630.1  CDS  gene_syn MZN1.24, MZN1_24  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 281 Blast hits to 235 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 82; Fungi - 9; Plants - 29; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink).  protein_id AT5G58630.1p  transcript_id AT5G58630.1  protein_id AT5G58630.1p  transcript_id AT5G58630.1  
At5g58640	chr5:023697996	0.0	W/23697996-23698178,23698258-23698334,23699003-23699321,23699398-23699505	AT5G58640.1  CDS  gene_syn MZN1.9, MZN1_9  go_component plasma membrane|GO:0005886|17644812|IDA  go_process cell redox homeostasis|GO:0045454||IEA  go_function selenium binding|GO:0008430||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  product selenoprotein-related  note selenoprotein-related; FUNCTIONS IN: selenium binding; INVOLVED IN: cell redox homeostasis; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SelT/selW/selH selenoprotein (InterPro:IPR011893); BEST Arabidopsis thaliana protein match is: SELT (SELT-LIKE PROTEIN PRECURSOR); selenium binding (TAIR:AT3G47300.1); Has 171 Blast hits to 171 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 119; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT5G58640.1p  transcript_id AT5G58640.1  protein_id AT5G58640.1p  transcript_id AT5G58640.1  
At5g58640	chr5:023697996	0.0	W/23697996-23698178,23698261-23698334,23699003-23699321,23699398-23699505	AT5G58640.2  CDS  gene_syn MZN1.9, MZN1_9  go_component plasma membrane|GO:0005886|17644812|IDA  go_process cell redox homeostasis|GO:0045454||IEA  go_function selenium binding|GO:0008430||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  product selenoprotein-related  note selenoprotein-related; FUNCTIONS IN: selenium binding; INVOLVED IN: cell redox homeostasis; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SelT/selW/selH selenoprotein (InterPro:IPR011893); BEST Arabidopsis thaliana protein match is: SELT (SELT-LIKE PROTEIN PRECURSOR); selenium binding (TAIR:AT3G47300.1); Has 175 Blast hits to 175 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 124; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G58640.2p  transcript_id AT5G58640.2  protein_id AT5G58640.2p  transcript_id AT5G58640.2  
At5g58650	chr5:023700099	0.0	C/23700099-23700186,23699879-23700018	AT5G58650.1  CDS  gene_syn MZN1.10, MZN1_10, PSY1, plant peptide containing sulfated tyrosine 1  gene PSY1  function Encodes PSY1, an18-aa tyrosine-sulfated glycopeptide that promotes cellular proliferation and expansion. PSY1 is widely expressed in various tissues, including shoot apical meristem, and is highly up-regulated by wounding. Perception of PSY1 depends on At1g72300, a leucine-rich repeat receptor kinase (LRR-RK).  go_component endomembrane system|GO:0012505||IEA  go_process cell proliferation|GO:0008283|17989228|IMP  go_function molecular_function|GO:0003674||ND  product PSY1 (plant peptide containing sulfated tyrosine 1)  note plant peptide containing sulfated tyrosine 1 (PSY1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell proliferation; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G58650.1p  transcript_id AT5G58650.1  protein_id AT5G58650.1p  transcript_id AT5G58650.1  
At5g58660	chr5:023701509	0.0	W/23701509-23701993,23703151-23703484,23703563-23703802	AT5G58660.1  CDS  gene_syn MZN1.11, MZN1_11  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT3G47190.1); Has 5587 Blast hits to 5572 proteins in 683 species: Archae - 0; Bacteria - 718; Metazoa - 121; Fungi - 561; Plants - 2973; Viruses - 0; Other Eukaryotes - 1214 (source: NCBI BLink).  protein_id AT5G58660.1p  transcript_id AT5G58660.1  protein_id AT5G58660.1p  transcript_id AT5G58660.1  
At5g58670	chr5:023706446	0.0	C/23706446-23706751,23706177-23706373,23705956-23706091,23705702-23705878,23705305-23705631,23705066-23705221,23704894-23704980,23704457-23704756	AT5G58670.1  CDS  gene_syn ARABIDOPSIS THALIANA PHOSPHOLIPASE C, ARABIDOPSIS THALIANA PHOSPHOLIPASE C 1, ATPLC, ATPLC1, MZN1.12, MZN1_12, PHOSPHOLIPASE C, PHOSPHOLIPASE C 1, PLC1  gene PLC1  function phosphatidylinositol-specific phospholipase C is induced to a significant extent under various environmental stresses, such as dehydration, salinity, and low temperature. May play a role in secondary ABA response. There are two genes called ATPLC1, one corresponding to AT4g38530 and one corresponding ot AT5g58670 (this one).  go_component cellular_component|GO:0005575||ND  go_process signal transduction|GO:0007165||ISS  go_process response to cold|GO:0009409|7732004|IEP  go_process response to water deprivation|GO:0009414|7732004|IEP  go_process response to salt stress|GO:0009651|7732004|IEP  go_process response to abscisic acid stimulus|GO:0009737|11340187|IMP  go_process abscisic acid mediated signaling|GO:0009738|11340187|TAS  go_function phospholipase C activity|GO:0004629|11340187|TAS  go_function phospholipase C activity|GO:0004629|7732004|IDA  go_function phospholipase C activity|GO:0004629|7732004|ISS  product PLC1 (PHOSPHOLIPASE C 1); phospholipase C  note PHOSPHOLIPASE C 1 (PLC1); FUNCTIONS IN: phospholipase C activity; INVOLVED IN: in 6 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphoinositol-specific, EF-hand-like (InterPro:IPR015359), Phospholipase C, phosphatidylinositol-specific , X region (InterPro:IPR000909), EF-HAND 1 (InterPro:IPR018247), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phospholipase C, phosphoinositol-specific, C-terminal (PLC) (InterPro:IPR001192), Phospholipase C, phosphatidylinositol-specific, Y domain (InterPro:IPR001711), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), EF-HAND 2 (InterPro:IPR018249), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: ATPLC1 (ARABIDOPSIS THALIANA PHOSPHOLIPASE C 1); phospholipase C (TAIR:AT4G38530.1); Has 2090 Blast hits to 1579 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 1452; Fungi - 284; Plants - 162; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).  protein_id AT5G58670.1p  transcript_id AT5G58670.1  protein_id AT5G58670.1p  transcript_id AT5G58670.1  
At5g58680	chr5:023708247	0.0	C/23708247-23709320	AT5G58680.1  CDS  gene_syn MZN1.14, MZN1_14  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product armadillo/beta-catenin repeat family protein  note armadillo/beta-catenin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein (TAIR:AT3G01400.1); Has 3866 Blast hits to 2288 proteins in 207 species: Archae - 0; Bacteria - 2; Metazoa - 1547; Fungi - 362; Plants - 1531; Viruses - 0; Other Eukaryotes - 424 (source: NCBI BLink).  protein_id AT5G58680.1p  transcript_id AT5G58680.1  protein_id AT5G58680.1p  transcript_id AT5G58680.1  
At5g58690	chr5:023711704	0.0	C/23711704-23712030,23711432-23711628,23711208-23711343,23710910-23711107,23710600-23710826,23710393-23710510,23710067-23710306,23709676-23709969	AT5G58690.1  CDS  gene_syn MZN1.15, MZN1_15  go_process lipid metabolic process|GO:0006629||IEA  go_process signal transduction|GO:0007165||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_function phosphoinositide phospholipase C activity|GO:0004435||IEA  go_function phospholipase C activity|GO:0004629||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function phosphoric diester hydrolase activity|GO:0008081||IEA  go_component cellular_component|GO:0005575||ND  go_process signal transduction|GO:0007165||ISS  go_function phospholipase C activity|GO:0004629||ISS  product phosphoinositide-specific phospholipase C family protein  note phosphoinositide-specific phospholipase C family protein; FUNCTIONS IN: phosphoinositide phospholipase C activity, phospholipase C activity, phosphoric diester hydrolase activity, calcium ion binding; INVOLVED IN: signal transduction, intracellular signaling cascade, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphoinositol-specific, EF-hand-like (InterPro:IPR015359), Phospholipase C, phosphatidylinositol-specific , X region (InterPro:IPR000909), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), EF-Hand type (InterPro:IPR011992), Phospholipase C, phosphoinositol-specific, C-terminal (PLC) (InterPro:IPR001192), Phospholipase C, phosphatidylinositol-specific, Y domain (InterPro:IPR001711), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: phosphoinositide-specific phospholipase C family protein (TAIR:AT2G40116.1); Has 2102 Blast hits to 1657 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 1480; Fungi - 280; Plants - 169; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).  protein_id AT5G58690.1p  transcript_id AT5G58690.1  protein_id AT5G58690.1p  transcript_id AT5G58690.1  
At5g58700	chr5:023715375	0.0	C/23715375-23715383,23715005-23715198,23714794-23714929,23714458-23714697,23714135-23714373,23713923-23714040,23713683-23713835,23713513-23713599,23713144-23713437	AT5G58700.2  CDS  gene_syn MZN1.19, MZN1_19  go_component plasma membrane|GO:0005886|17317660|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_process signal transduction|GO:0007165||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_function phosphoinositide phospholipase C activity|GO:0004435||IEA  go_function phospholipase C activity|GO:0004629||IEA  go_function phosphoric diester hydrolase activity|GO:0008081||IEA  go_process lipid metabolic process|GO:0006629||ISS  go_process signal transduction|GO:0007165||ISS  go_process intracellular signaling cascade|GO:0007242||ISS  go_function phosphoinositide phospholipase C activity|GO:0004435||ISS  product phosphoinositide-specific phospholipase C family protein  note phosphoinositide-specific phospholipase C family protein; FUNCTIONS IN: phosphoinositide phospholipase C activity, phospholipase C activity, phosphoric diester hydrolase activity; INVOLVED IN: signal transduction, intracellular signaling cascade, lipid metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific , X region (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phospholipase C, phosphoinositol-specific, C-terminal (PLC) (InterPro:IPR001192), C2 calcium-dependent membrane targeting (InterPro:IPR000008), Phospholipase C, phosphatidylinositol-specific, Y domain (InterPro:IPR001711); BEST Arabidopsis thaliana protein match is: ATPLC2 (PHOSPHOLIPASE C 2); phospholipase C (TAIR:AT3G08510.2); Has 1969 Blast hits to 1557 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 1375; Fungi - 250; Plants - 163; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink).  protein_id AT5G58700.2p  transcript_id AT5G58700.2  protein_id AT5G58700.2p  transcript_id AT5G58700.2  
At5g58700	chr5:023715725	0.0	C/23715725-23716057,23715005-23715198,23714794-23714929,23714458-23714697,23714135-23714373,23713923-23714040,23713683-23713835,23713513-23713599,23713144-23713437	AT5G58700.1  CDS  gene_syn MZN1.19, MZN1_19  go_component plasma membrane|GO:0005886|17317660|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_process signal transduction|GO:0007165||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_function phosphoinositide phospholipase C activity|GO:0004435||IEA  go_function phospholipase C activity|GO:0004629||IEA  go_function phosphoric diester hydrolase activity|GO:0008081||IEA  go_process lipid metabolic process|GO:0006629||ISS  go_process signal transduction|GO:0007165||ISS  go_process intracellular signaling cascade|GO:0007242||ISS  go_function phosphoinositide phospholipase C activity|GO:0004435||ISS  product phosphoinositide-specific phospholipase C family protein  note phosphoinositide-specific phospholipase C family protein; FUNCTIONS IN: phospholipase C activity, phosphoinositide phospholipase C activity, phosphoric diester hydrolase activity; INVOLVED IN: signal transduction, intracellular signaling cascade, lipid metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific , X region (InterPro:IPR000909), Phospholipase C, phosphoinositol-specific, EF-hand-like (InterPro:IPR015359), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phospholipase C, phosphoinositol-specific, C-terminal (PLC) (InterPro:IPR001192), C2 calcium-dependent membrane targeting (InterPro:IPR000008), Phospholipase C, phosphatidylinositol-specific, Y domain (InterPro:IPR001711); BEST Arabidopsis thaliana protein match is: phosphoinositide-specific phospholipase C family protein (TAIR:AT2G40116.1); Has 1982 Blast hits to 1570 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 1376; Fungi - 252; Plants - 164; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink).  protein_id AT5G58700.1p  transcript_id AT5G58700.1  protein_id AT5G58700.1p  transcript_id AT5G58700.1  
At5g58710	chr5:023717840	0.0	W/23717840-23717905,23718441-23718519,23718643-23718714,23718839-23719021,23719110-23719185,23719357-23719495	AT5G58710.1  CDS  gene_syn CYCLOPHILIN, MZN1.23, MZN1_23, ROC7  gene ROC7  function Encodes cyclophilin ROC7.  go_component chloroplast|GO:0009507|18431481|IDA  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||IEA  go_process protein folding|GO:0006457||ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product ROC7; peptidyl-prolyl cis-trans isomerase  note ROC7; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: CYP5 (CYCLOPHILIN 5); peptidyl-prolyl cis-trans isomerase (TAIR:AT2G29960.1); Has 11252 Blast hits to 11236 proteins in 1519 species: Archae - 82; Bacteria - 3617; Metazoa - 2391; Fungi - 961; Plants - 735; Viruses - 4; Other Eukaryotes - 3462 (source: NCBI BLink).  protein_id AT5G58710.1p  transcript_id AT5G58710.1  protein_id AT5G58710.1p  transcript_id AT5G58710.1  
At5g58720	chr5:023722335	0.0	C/23722335-23722974,23722120-23722145,23721909-23721995,23721742-23721812,23721194-23721420,23720864-23720940,23720734-23720790,23720582-23720649,23720334-23720496	AT5G58720.2  CDS  gene_syn MZN1.26, MZN1_26  go_component cellular_component|GO:0005575||ND  go_process mismatch repair|GO:0006298||ISS  go_function damaged DNA binding|GO:0003684||ISS  go_function ATP binding|GO:0005524||ISS  product PRLI-interacting factor, putative  note PRLI-interacting factor, putative; FUNCTIONS IN: damaged DNA binding, ATP binding; INVOLVED IN: mismatch repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Smr protein/MutS2 C-terminal (InterPro:IPR002625), Region of unknown function DUF1771 (InterPro:IPR013899); BEST Arabidopsis thaliana protein match is: SDE5 (silencing defective 5) (TAIR:AT3G15390.1); Has 13 Blast hits to 13 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 4; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G58720.2p  transcript_id AT5G58720.2  protein_id AT5G58720.2p  transcript_id AT5G58720.2  
At5g58720	chr5:023722335	0.0	C/23722335-23722974,23722120-23722145,23721909-23721995,23721742-23721812,23721194-23721420,23720864-23720940,23720734-23720790,23720582-23720649,23720390-23720496,23720109-23720269	AT5G58720.3  CDS  gene_syn MZN1.26, MZN1_26  go_component cellular_component|GO:0005575||ND  go_process mismatch repair|GO:0006298||ISS  go_function damaged DNA binding|GO:0003684||ISS  go_function ATP binding|GO:0005524||ISS  product PRLI-interacting factor, putative  note PRLI-interacting factor, putative; FUNCTIONS IN: damaged DNA binding, ATP binding; INVOLVED IN: mismatch repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Smr protein/MutS2 C-terminal (InterPro:IPR002625), Region of unknown function DUF1771 (InterPro:IPR013899); BEST Arabidopsis thaliana protein match is: SDE5 (silencing defective 5) (TAIR:AT3G15390.1); Has 19 Blast hits to 19 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 10; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G58720.3p  transcript_id AT5G58720.3  protein_id AT5G58720.3p  transcript_id AT5G58720.3  
At5g58720	chr5:023722335	0.0	C/23722335-23722974,23722120-23722145,23721909-23721995,23721742-23721812,23721194-23721420,23720864-23720940,23720734-23720790,23720582-23720649,23720390-23720496,23720199-23720269,23719976-23720104	AT5G58720.1  CDS  gene_syn MZN1.26, MZN1_26  go_component cellular_component|GO:0005575||ND  go_process mismatch repair|GO:0006298||ISS  go_function damaged DNA binding|GO:0003684||ISS  go_function ATP binding|GO:0005524||ISS  product PRLI-interacting factor, putative  note PRLI-interacting factor, putative; FUNCTIONS IN: damaged DNA binding, ATP binding; INVOLVED IN: mismatch repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Smr protein/MutS2 C-terminal (InterPro:IPR002625), Region of unknown function DUF1771 (InterPro:IPR013899); BEST Arabidopsis thaliana protein match is: SDE5 (silencing defective 5) (TAIR:AT3G15390.1); Has 242 Blast hits to 240 proteins in 93 species: Archae - 0; Bacteria - 2; Metazoa - 58; Fungi - 102; Plants - 61; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT5G58720.1p  transcript_id AT5G58720.1  protein_id AT5G58720.1p  transcript_id AT5G58720.1  
At5g58730	chr5:023724440	0.0	C/23724440-23725324,23723627-23723803	AT5G58730.1  CDS  gene_syn MZN1.17, MZN1_17  go_process biological_process|GO:0008150||ND  go_function kinase activity|GO:0016301||ISS  product pfkB-type carbohydrate kinase family protein  note pfkB-type carbohydrate kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-type carbohydrate kinase family protein (TAIR:AT4G10260.1); Has 3701 Blast hits to 3701 proteins in 856 species: Archae - 121; Bacteria - 2338; Metazoa - 2; Fungi - 53; Plants - 186; Viruses - 2; Other Eukaryotes - 999 (source: NCBI BLink).  protein_id AT5G58730.1p  transcript_id AT5G58730.1  protein_id AT5G58730.1p  transcript_id AT5G58730.1  
At5g58740	chr5:023727480	0.0	C/23727480-23727528,23727230-23727378,23727067-23727115,23726620-23726762,23725936-23726022	AT5G58740.1  CDS  gene_syn MZN1.18, MZN1_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product nuclear movement family protein  note nuclear movement family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CS domain (InterPro:IPR007052), HSP20-like chaperone (InterPro:IPR008978), CS (InterPro:IPR017447); BEST Arabidopsis thaliana protein match is: nuclear movement family protein (TAIR:AT4G27890.1); Has 486 Blast hits to 486 proteins in 134 species: Archae - 0; Bacteria - 0; Metazoa - 243; Fungi - 46; Plants - 71; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink).  protein_id AT5G58740.1p  transcript_id AT5G58740.1  protein_id AT5G58740.1p  transcript_id AT5G58740.1  
At5g58750	chr5:023728886	0.0	W/23728886-23730046	AT5G58750.1  CDS  gene_syn MZN1.13, MZN1_13  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  product wound-responsive protein-related  note wound-responsive protein-related; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: VEP1 (VEIN PATTERNING 1); binding / catalytic (TAIR:AT4G24220.2); Has 402 Blast hits to 400 proteins in 117 species: Archae - 0; Bacteria - 128; Metazoa - 0; Fungi - 81; Plants - 122; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT5G58750.1p  transcript_id AT5G58750.1  protein_id AT5G58750.1p  transcript_id AT5G58750.1  
At5g58760	chr5:023733373	0.0	C/23733373-23733606,23733008-23733098,23732764-23732891,23732550-23732672,23732358-23732446,23732107-23732227,23731938-23732029,23731708-23731837,23731349-23731597,23731070-23731266,23730741-23730960	AT5G58760.1  CDS  gene_syn DDB2, MZN1.20, MZN1_20, damaged DNA-binding 2  gene DDB2  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product DDB2 (damaged DNA-binding 2); nucleic acid binding / nucleotide binding / zinc ion binding  note damaged DNA-binding 2 (DDB2); FUNCTIONS IN: nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT1G80710.1); Has 3318 Blast hits to 3006 proteins in 249 species: Archae - 18; Bacteria - 310; Metazoa - 1331; Fungi - 862; Plants - 258; Viruses - 0; Other Eukaryotes - 539 (source: NCBI BLink).  protein_id AT5G58760.1p  transcript_id AT5G58760.1  protein_id AT5G58760.1p  transcript_id AT5G58760.1  
At5g58770	chr5:023734396	0.0	W/23734396-23734812,23734899-23734966,23735048-23735495	AT5G58770.1  CDS  gene_syn MZN1.21, MZN1_21  go_component chloroplast|GO:0009507|18431481|IDA  go_process dolichol biosynthetic process|GO:0019408|10908715|IGI  go_function dehydrodolichyl diphosphate synthase activity|GO:0045547|10908715|IGI  product dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative  note dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative; FUNCTIONS IN: dehydrodolichyl diphosphate synthase activity; INVOLVED IN: dolichol biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Di-trans-poly-cis-decaprenylcistransferase-like, conserved site (InterPro:IPR018520), Di-trans-poly-cis-decaprenylcistransferase-like (InterPro:IPR001441); BEST Arabidopsis thaliana protein match is: dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative (TAIR:AT5G58782.1); Has 6355 Blast hits to 6324 proteins in 1542 species: Archae - 181; Bacteria - 2806; Metazoa - 156; Fungi - 167; Plants - 121; Viruses - 0; Other Eukaryotes - 2924 (source: NCBI BLink).  protein_id AT5G58770.1p  transcript_id AT5G58770.1  protein_id AT5G58770.1p  transcript_id AT5G58770.1  
At5g58780	chr5:023737127	0.0	C/23737127-23737284,23736419-23736656,23736277-23736344,23735755-23736199	AT5G58780.1  CDS  gene_syn MZN1.33  go_component endomembrane system|GO:0012505||IEA  go_process dolichol biosynthetic process|GO:0019408|10908715|IGI  go_function dehydrodolichyl diphosphate synthase activity|GO:0045547|10908715|IGI  product dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative  note dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative; FUNCTIONS IN: dehydrodolichyl diphosphate synthase activity; INVOLVED IN: dolichol biosynthetic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Di-trans-poly-cis-decaprenylcistransferase-like, conserved site (InterPro:IPR018520), Di-trans-poly-cis-decaprenylcistransferase-like (InterPro:IPR001441); BEST Arabidopsis thaliana protein match is: ACPT (Arabidopsis cis-prenyltransferase); dehydrodolichyl diphosphate synthase (TAIR:AT2G23410.1); Has 6358 Blast hits to 6325 proteins in 1544 species: Archae - 181; Bacteria - 2802; Metazoa - 162; Fungi - 169; Plants - 121; Viruses - 0; Other Eukaryotes - 2923 (source: NCBI BLink).  protein_id AT5G58780.1p  transcript_id AT5G58780.1  protein_id AT5G58780.1p  transcript_id AT5G58780.1  
At5g58782	chr5:023739324	0.0	C/23739324-23739430,23738982-23739231,23738834-23738901,23738306-23738750	AT5G58782.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process dolichol biosynthetic process|GO:0019408|10908715|IGI  go_function dehydrodolichyl diphosphate synthase activity|GO:0045547|10908715|IGI  product dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative  note dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative; FUNCTIONS IN: dehydrodolichyl diphosphate synthase activity; INVOLVED IN: dolichol biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, sepal, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Di-trans-poly-cis-decaprenylcistransferase-like, conserved site (InterPro:IPR018520), Di-trans-poly-cis-decaprenylcistransferase-like (InterPro:IPR001441); BEST Arabidopsis thaliana protein match is: dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative (TAIR:AT5G58780.1); Has 6348 Blast hits to 6317 proteins in 1543 species: Archae - 181; Bacteria - 2803; Metazoa - 153; Fungi - 167; Plants - 123; Viruses - 0; Other Eukaryotes - 2921 (source: NCBI BLink).  protein_id AT5G58782.1p  transcript_id AT5G58782.1  protein_id AT5G58782.1p  transcript_id AT5G58782.1  
At5g58784	chr5:023741101	0.0	C/23741101-23741267,23740773-23741001,23740477-23740544,23739950-23740394	AT5G58784.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process dolichol biosynthetic process|GO:0019408|10908715|IGI  go_function dehydrodolichyl diphosphate synthase activity|GO:0045547|10908715|IGI  product dehydrodolichyl diphosphate synthase  note dehydrodolichyl diphosphate synthase; FUNCTIONS IN: dehydrodolichyl diphosphate synthase activity; INVOLVED IN: dolichol biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Di-trans-poly-cis-decaprenylcistransferase-like, conserved site (InterPro:IPR018520), Di-trans-poly-cis-decaprenylcistransferase-like (InterPro:IPR001441); BEST Arabidopsis thaliana protein match is: dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative (TAIR:AT5G58780.1); Has 6333 Blast hits to 6304 proteins in 1544 species: Archae - 181; Bacteria - 2805; Metazoa - 157; Fungi - 160; Plants - 123; Viruses - 0; Other Eukaryotes - 2907 (source: NCBI BLink).  protein_id AT5G58784.1p  transcript_id AT5G58784.1  protein_id AT5G58784.1p  transcript_id AT5G58784.1  
At5g58787	chr5:023742733	0.0	W/23742733-23742800,23743404-23743554,23743646-23743712,23743809-23744034,23744108-23744324	AT5G58787.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT3G47160.1); Has 957 Blast hits to 956 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 440; Fungi - 36; Plants - 203; Viruses - 88; Other Eukaryotes - 190 (source: NCBI BLink).  protein_id AT5G58787.1p  transcript_id AT5G58787.1  protein_id AT5G58787.1p  transcript_id AT5G58787.1  
At5g58787	chr5:023742733	0.0	W/23742733-23742800,23743404-23743554,23743646-23743712,23743854-23744034,23744108-23744324	AT5G58787.2  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT3G47160.1); Has 970 Blast hits to 969 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 441; Fungi - 37; Plants - 197; Viruses - 90; Other Eukaryotes - 205 (source: NCBI BLink).  protein_id AT5G58787.2p  transcript_id AT5G58787.2  protein_id AT5G58787.2p  transcript_id AT5G58787.2  
At5g58790	chr5:023745327	0.0	W/23745327-23745359,23745448-23745483	AT5G58790.1  CDS  gene_syn MZN1.28  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G58790.1p  transcript_id AT5G58790.1  protein_id AT5G58790.1p  transcript_id AT5G58790.1  
At5g58790	chr5:023745327	0.0	W/23745327-23745359,23745468-23745632	AT5G58790.2  CDS  gene_syn MZN1.28  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages.  protein_id AT5G58790.2p  transcript_id AT5G58790.2  protein_id AT5G58790.2p  transcript_id AT5G58790.2  
At5g58790	chr5:023745327	0.0	W/23745327-23745359,23745479-23745505	AT5G58790.3  CDS  gene_syn MZN1.28  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages.  protein_id AT5G58790.3p  transcript_id AT5G58790.3  protein_id AT5G58790.3p  transcript_id AT5G58790.3  
At5g58800	chr5:023746870	0.0	C/23746870-23746895,23746341-23746700,23746032-23746269	AT5G58800.1  CDS  gene_syn MZN1.27, MZN1_27  go_component plasma membrane|GO:0005886|17317660|IDA  go_process negative regulation of transcription|GO:0016481||IEA  go_function FMN binding|GO:0010181||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product quinone reductase family protein  note quinone reductase family protein; FUNCTIONS IN: oxidoreductase activity, FMN binding; INVOLVED IN: negative regulation of transcription; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Flavoprotein WrbA (InterPro:IPR010089), Flavodoxin/nitric oxide synthase (InterPro:IPR008254); BEST Arabidopsis thaliana protein match is: quinone reductase family protein (TAIR:AT4G27270.1); Has 2079 Blast hits to 2079 proteins in 653 species: Archae - 32; Bacteria - 1498; Metazoa - 2; Fungi - 180; Plants - 117; Viruses - 1; Other Eukaryotes - 249 (source: NCBI BLink).  protein_id AT5G58800.1p  transcript_id AT5G58800.1  protein_id AT5G58800.1p  transcript_id AT5G58800.1  
At5g58800	chr5:023746870	0.0	C/23746870-23746895,23746341-23746700,23746032-23746269	AT5G58800.2  CDS  gene_syn MZN1.27, MZN1_27  go_component plasma membrane|GO:0005886|17317660|IDA  go_process negative regulation of transcription|GO:0016481||IEA  go_function FMN binding|GO:0010181||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product quinone reductase family protein  note quinone reductase family protein; FUNCTIONS IN: oxidoreductase activity, FMN binding; INVOLVED IN: negative regulation of transcription; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Flavoprotein WrbA (InterPro:IPR010089), Flavodoxin/nitric oxide synthase (InterPro:IPR008254); BEST Arabidopsis thaliana protein match is: quinone reductase family protein (TAIR:AT4G27270.1); Has 2079 Blast hits to 2079 proteins in 653 species: Archae - 32; Bacteria - 1498; Metazoa - 2; Fungi - 180; Plants - 117; Viruses - 1; Other Eukaryotes - 249 (source: NCBI BLink).  protein_id AT5G58800.2p  transcript_id AT5G58800.2  protein_id AT5G58800.2p  transcript_id AT5G58800.2  
At5g58810	chr5:023747962	0.0	W/23747962-23750853	AT5G58810.1  pseudogenic_transcript  pseudo  note subtilisin-like serine protease, pseudogene, contains similarity to prepro-cucumisin GI:807698 from (Cucumis melo); non-consensus acceptor site AA at exon 6; blastp match of 43% identity and 2.1e-113 P-value to GP|13325079|gb|AAD02075.3||AF036960 subtilisin-like protease C1 {Glycine max}  
At5g58820	chr5:023751956	0.0	W/23751956-23752039,23752166-23752260,23752346-23752437,23752522-23752774,23752858-23753344,23753421-23753665,23753740-23753851,23753930-23754143,23754244-23754773	AT5G58820.1  CDS  gene_syn K19M22.2, K19M22_2  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product subtilase family protein  note subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT5G58840.1); Has 3520 Blast hits to 3156 proteins in 567 species: Archae - 106; Bacteria - 2014; Metazoa - 37; Fungi - 123; Plants - 845; Viruses - 0; Other Eukaryotes - 395 (source: NCBI BLink).  protein_id AT5G58820.1p  transcript_id AT5G58820.1  protein_id AT5G58820.1p  transcript_id AT5G58820.1  
At5g58830	chr5:023755787	0.0	W/23755787-23755882,23755979-23756073,23756198-23756262,23756345-23756597,23756671-23757157,23757238-23757479,23757563-23757674,23757753-23757966,23758059-23758600	AT5G58830.1  CDS  gene_syn K19M22.4, K19M22_4  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product identical protein binding / serine-type endopeptidase  note identical protein binding / serine-type endopeptidase; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, embryo; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT5G58840.1); Has 3997 Blast hits to 3593 proteins in 668 species: Archae - 141; Bacteria - 2385; Metazoa - 46; Fungi - 162; Plants - 840; Viruses - 0; Other Eukaryotes - 423 (source: NCBI BLink).  protein_id AT5G58830.1p  transcript_id AT5G58830.1  protein_id AT5G58830.1p  transcript_id AT5G58830.1  
At5g58840	chr5:023759043	0.0	W/23759043-23759141,23759234-23759331,23759432-23759523,23759598-23759850,23760001-23760487,23760579-23760817,23760896-23761007,23761090-23761303,23761400-23761947	AT5G58840.1  CDS  gene_syn K19M22.3, K19M22_3  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product subtilase family protein  note subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: identical protein binding / serine-type endopeptidase (TAIR:AT5G58830.1); Has 3887 Blast hits to 3543 proteins in 644 species: Archae - 109; Bacteria - 2301; Metazoa - 44; Fungi - 155; Plants - 874; Viruses - 0; Other Eukaryotes - 404 (source: NCBI BLink).  protein_id AT5G58840.1p  transcript_id AT5G58840.1  protein_id AT5G58840.1p  transcript_id AT5G58840.1  
At5g58850	chr5:023763945	0.0	W/23763945-23764285,23764382-23764508,23764617-23765441	AT5G58850.1  CDS  gene_syn ATMYB119, K19M22.5, K19M22_5, MYB DOMAIN PROTEIN 119, MYB119  gene MYB119  function Encodes a putative transcription factor, member of the R2R3 factor gene family (MYB119).  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677|11597504|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product MYB119 (MYB DOMAIN PROTEIN 119); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 119 (MYB119); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB64 (myb domain protein 64); DNA binding / transcription factor (TAIR:AT5G11050.1); Has 6976 Blast hits to 6090 proteins in 375 species: Archae - 0; Bacteria - 2; Metazoa - 972; Fungi - 496; Plants - 3527; Viruses - 7; Other Eukaryotes - 1972 (source: NCBI BLink).  protein_id AT5G58850.1p  transcript_id AT5G58850.1  protein_id AT5G58850.1p  transcript_id AT5G58850.1  
At5g58860	chr5:023766858	0.0	C/23766858-23767997,23765999-23766400	AT5G58860.1  CDS  gene_syn CYP86, CYP86A1, CYTOCHROME P450 86 A1, K19M22.14, K19M22_14  gene CYP86A1  function Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly only in root tissue.  go_component vacuole|GO:0005773|15539469|IDA  go_process fatty acid metabolic process|GO:0006631|15709153|IDA  go_process suberin biosynthetic process|GO:0010345|17991776|IMP  go_function fatty acid (omega-1)-hydroxylase activity|GO:0008393|15709153|IDA  go_function oxygen binding|GO:0019825||ISS  product CYP86A1 (CYTOCHROME P450 86 A1); fatty acid (omega-1)-hydroxylase/ oxygen binding  note CYTOCHROME P450 86 A1 (CYP86A1); FUNCTIONS IN: fatty acid (omega-1)-hydroxylase activity, oxygen binding; INVOLVED IN: fatty acid metabolic process, suberin biosynthetic process; LOCATED IN: vacuole; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP86A2 (CYTOCHROME P450 86 A2); fatty acid (omega-1)-hydroxylase/ oxygen binding (TAIR:AT4G00360.1); Has 20368 Blast hits to 20320 proteins in 1083 species: Archae - 19; Bacteria - 1655; Metazoa - 9248; Fungi - 3965; Plants - 4719; Viruses - 3; Other Eukaryotes - 759 (source: NCBI BLink).  protein_id AT5G58860.1p  transcript_id AT5G58860.1  protein_id AT5G58860.1p  transcript_id AT5G58860.1  
At5g58870	chr5:023772886	0.0	C/23772886-23773719,23772729-23772794,23772511-23772645,23772324-23772389,23772030-23772215,23771855-23771941,23771654-23771767,23771455-23771579,23771258-23771366,23771054-23771179,23770651-23770971,23770447-23770570,23770080-23770207	AT5G58870.1  CDS  gene_syn FtsH protease 9, K19M22.17, K19M22_17, ftsh9  gene ftsh9  function encodes an FtsH protease that is localized to the chloroplast  go_component chloroplast|GO:0009507|18431481|IDA  go_process proteolysis|GO:0006508||IEA  go_process protein catabolic process|GO:0030163||IEA  go_component chloroplast|GO:0009507|14630971|IDA  go_function ATP-dependent peptidase activity|GO:0004176|11299370|ISS  go_function metallopeptidase activity|GO:0008237||ISS  go_function ATPase activity|GO:0016887||ISS  product ftsh9 (FtsH protease 9); ATP-dependent peptidase/ ATPase/ metallopeptidase  note FtsH protease 9 (ftsh9); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: proteolysis, protein catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: ftsh7 (FtsH protease 7); ATP-dependent peptidase/ ATPase/ metallopeptidase (TAIR:AT3G47060.1); Has 29029 Blast hits to 27283 proteins in 1906 species: Archae - 899; Bacteria - 9718; Metazoa - 4183; Fungi - 2378; Plants - 1791; Viruses - 24; Other Eukaryotes - 10036 (source: NCBI BLink).  protein_id AT5G58870.1p  transcript_id AT5G58870.1  protein_id AT5G58870.1p  transcript_id AT5G58870.1  
At5g58880	chr5:023775966	0.0	W/23775966-23777067,23777152-23778956,23779145-23779504	AT5G58880.1  CDS  gene_syn K19M22.8, K19M22_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29620.1); Has 8726 Blast hits to 6022 proteins in 565 species: Archae - 31; Bacteria - 1059; Metazoa - 2983; Fungi - 692; Plants - 222; Viruses - 88; Other Eukaryotes - 3651 (source: NCBI BLink).  protein_id AT5G58880.1p  transcript_id AT5G58880.1  protein_id AT5G58880.1p  transcript_id AT5G58880.1  
At5g58890	chr5:023780832	0.0	W/23780832-23781716	AT5G58890.1  CDS  gene_syn AGAMOUS-LIKE 82, AGL82, K19M22.9, K19M22_9  gene AGL82  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL82 (AGAMOUS-LIKE 82); DNA binding / transcription factor  note AGAMOUS-LIKE 82 (AGL82); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: MADS-box protein (AGL47) (TAIR:AT5G55690.1); Has 1705 Blast hits to 1703 proteins in 305 species: Archae - 0; Bacteria - 0; Metazoa - 198; Fungi - 79; Plants - 1404; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT5G58890.1p  transcript_id AT5G58890.1  protein_id AT5G58890.1p  transcript_id AT5G58890.1  
At5g58900	chr5:023784222	0.0	C/23784222-23784667,23783275-23783695	AT5G58900.1  CDS  gene_syn K19M22.10, K19M22_10  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT2G38090.1); Has 1021 Blast hits to 1019 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 2; Plants - 822; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT5G58900.1p  transcript_id AT5G58900.1  protein_id AT5G58900.1p  transcript_id AT5G58900.1  
At5g58910	chr5:023791536	0.0	C/23791536-23791681,23791180-23791403,23790970-23791098,23789864-23790805,23789522-23789652	AT5G58910.1  CDS  gene_syn K19M22.11, K19M22_11, LAC16, laccase 16  gene LAC16  function putative laccase, a member of laccase family of genes (17 members in Arabidopsis).  go_component apoplast|GO:0048046||IEA  go_process lignin catabolic process|GO:0046274||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function laccase activity|GO:0008471|15940465|ISS  product LAC16 (laccase 16); laccase  note laccase 16 (LAC16); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: apoplast; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Laccase (InterPro:IPR017761), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: IRX12 (IRREGULAR XYLEM 12); laccase (TAIR:AT2G38080.1); Has 6227 Blast hits to 5286 proteins in 820 species: Archae - 8; Bacteria - 2154; Metazoa - 421; Fungi - 2441; Plants - 883; Viruses - 0; Other Eukaryotes - 320 (source: NCBI BLink).  protein_id AT5G58910.1p  transcript_id AT5G58910.1  protein_id AT5G58910.1p  transcript_id AT5G58910.1  
At5g58920	chr5:023793239	0.0	W/23793239-23793272,23793560-23794014	AT5G58920.1  CDS  gene_syn K19M22.6, K19M22_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 14 Blast hits to 14 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G58920.1p  transcript_id AT5G58920.1  protein_id AT5G58920.1p  transcript_id AT5G58920.1  
At5g58930	chr5:023794529	0.0	C/23794529-23796094	AT5G58930.1  CDS  gene_syn K19M22.12, K19M22_12  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF740 (InterPro:IPR008004); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46990.1); Has 79 Blast hits to 78 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 8; Plants - 56; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT5G58930.1p  transcript_id AT5G58930.1  protein_id AT5G58930.1p  transcript_id AT5G58930.1  
At5g58940	chr5:023798659	0.0	W/23798659-23798908,23799134-23799420,23799529-23799697,23799842-23799931,23800013-23800311,23800399-23800716	AT5G58940.1  CDS  gene_syn CALMODULIN-BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE 1, CRCK1, K19M22.13, K19M22_13  gene CRCK1  function Arabidopsis thaliana calmodulin-binding receptor-like kinase mRNA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product CRCK1 (CALMODULIN-BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note CALMODULIN-BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE 1 (CRCK1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CRCK2; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT4G00330.1); Has 88676 Blast hits to 87609 proteins in 3332 species: Archae - 52; Bacteria - 8195; Metazoa - 38748; Fungi - 6985; Plants - 18964; Viruses - 452; Other Eukaryotes - 15280 (source: NCBI BLink).  protein_id AT5G58940.1p  transcript_id AT5G58940.1  protein_id AT5G58940.1p  transcript_id AT5G58940.1  
At5g58950	chr5:023802210	0.0	C/23802210-23803025,23801643-23802098,23801136-23801441	AT5G58950.1  CDS  gene_syn K19M22.20, K19M22_20  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G46930.1); Has 97287 Blast hits to 95864 proteins in 3755 species: Archae - 57; Bacteria - 8154; Metazoa - 43395; Fungi - 8207; Plants - 19435; Viruses - 506; Other Eukaryotes - 17533 (source: NCBI BLink).  protein_id AT5G58950.1p  transcript_id AT5G58950.1  protein_id AT5G58950.1p  transcript_id AT5G58950.1  
At5g58960	chr5:023805799	0.0	W/23805799-23805845,23806644-23806778,23806863-23808360	AT5G58960.1  CDS  gene_syn GIL1, GRAVITROPIC IN THE LIGHT, K19M22.15, K19M22_15  gene GIL1  function Mutant plants display impaired light-regulation of the hypocotyl randomization response.  go_process response to red or far red light|GO:0009639|16640600|IMP  go_process negative gravitropism|GO:0009959|16640600|IMP  go_function molecular_function|GO:0003674||ND  product GIL1 (GRAVITROPIC IN THE LIGHT)  note GRAVITROPIC IN THE LIGHT (GIL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to red or far red light, negative gravitropism; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF641, plant (InterPro:IPR006943); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45260.1); Has 194 Blast hits to 194 proteins in 18 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 2; Plants - 178; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G58960.1p  transcript_id AT5G58960.1  protein_id AT5G58960.1p  transcript_id AT5G58960.1  
At5g58960	chr5:023806906	0.0	W/23806906-23808360	AT5G58960.2  CDS  gene_syn GIL1, GRAVITROPIC IN THE LIGHT, K19M22.15, K19M22_15  gene GIL1  function Mutant plants display impaired light-regulation of the hypocotyl randomization response.  go_process response to red or far red light|GO:0009639|16640600|IMP  go_process negative gravitropism|GO:0009959|16640600|IMP  go_function molecular_function|GO:0003674||ND  product GIL1 (GRAVITROPIC IN THE LIGHT)  note GRAVITROPIC IN THE LIGHT (GIL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to red or far red light, negative gravitropism; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF641, plant (InterPro:IPR006943); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45260.1); Has 187 Blast hits to 187 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 178; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G58960.2p  transcript_id AT5G58960.2  protein_id AT5G58960.2p  transcript_id AT5G58960.2  
At5g58960	chr5:023806906	0.0	W/23806906-23808360	AT5G58960.3  CDS  gene_syn GIL1, GRAVITROPIC IN THE LIGHT, K19M22.15, K19M22_15  gene GIL1  function Mutant plants display impaired light-regulation of the hypocotyl randomization response.  go_process response to red or far red light|GO:0009639|16640600|IMP  go_process negative gravitropism|GO:0009959|16640600|IMP  go_function molecular_function|GO:0003674||ND  product GIL1 (GRAVITROPIC IN THE LIGHT)  note GRAVITROPIC IN THE LIGHT (GIL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to red or far red light, negative gravitropism; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF641, plant (InterPro:IPR006943); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45260.1); Has 187 Blast hits to 187 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 178; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G58960.3p  transcript_id AT5G58960.3  protein_id AT5G58960.3p  transcript_id AT5G58960.3  
At5g58970	chr5:023810938	0.0	C/23810938-23811018,23810350-23810568,23810164-23810242,23809933-23810066,23809746-23809844,23809437-23809643	AT5G58970.2  CDS  gene_syn ATUCP2, K19M22.21, K19M22_21, UNCOUPLING PROTEIN 2  gene ATUCP2  function uncoupling protein  go_component mitochondrion|GO:0005739||IEA  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_process mitochondrial transport|GO:0006839||IEA  go_function oxidative phosphorylation uncoupler activity|GO:0017077||ISS  product ATUCP2 (UNCOUPLING PROTEIN 2); oxidative phosphorylation uncoupler  note UNCOUPLING PROTEIN 2 (ATUCP2); FUNCTIONS IN: oxidative phosphorylation uncoupler activity; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrion, endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial brown fat uncoupling protein (InterPro:IPR002030), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: PUMP1 (PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1); binding / oxidative phosphorylation uncoupler (TAIR:AT3G54110.1); Has 16719 Blast hits to 8879 proteins in 336 species: Archae - 0; Bacteria - 0; Metazoa - 9122; Fungi - 3994; Plants - 2239; Viruses - 0; Other Eukaryotes - 1364 (source: NCBI BLink).  protein_id AT5G58970.2p  transcript_id AT5G58970.2  protein_id AT5G58970.2p  transcript_id AT5G58970.2  
At5g58970	chr5:023810938	0.0	C/23810938-23811018,23810350-23810568,23810164-23810242,23809933-23810066,23809746-23809844,23809539-23809643,23808962-23809036,23808791-23808877,23808642-23808680	AT5G58970.1  CDS  gene_syn ATUCP2, K19M22.21, K19M22_21, UNCOUPLING PROTEIN 2  gene ATUCP2  function uncoupling protein  go_component mitochondrion|GO:0005739||IEA  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_process mitochondrial transport|GO:0006839||IEA  go_function oxidative phosphorylation uncoupler activity|GO:0017077||ISS  product ATUCP2 (UNCOUPLING PROTEIN 2); oxidative phosphorylation uncoupler  note UNCOUPLING PROTEIN 2 (ATUCP2); FUNCTIONS IN: oxidative phosphorylation uncoupler activity; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrion, endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial brown fat uncoupling protein (InterPro:IPR002030), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: PUMP1 (PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1); binding / oxidative phosphorylation uncoupler (TAIR:AT3G54110.1); Has 18771 Blast hits to 9748 proteins in 358 species: Archae - 0; Bacteria - 0; Metazoa - 9470; Fungi - 4970; Plants - 2650; Viruses - 3; Other Eukaryotes - 1678 (source: NCBI BLink).  protein_id AT5G58970.1p  transcript_id AT5G58970.1  protein_id AT5G58970.1p  transcript_id AT5G58970.1  
At5g58980	chr5:023813876	0.0	C/23813876-23814395,23813644-23813784,23813460-23813558,23813113-23813377,23812699-23812969,23812496-23812621,23812342-23812405,23812091-23812251,23811449-23812003	AT5G58980.1  CDS  gene_syn K19M22.22, K19M22_22  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function ceramidase activity|GO:0017040||ISS  product ceramidase family protein  note ceramidase family protein; FUNCTIONS IN: ceramidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Neutral/alkaline nonlysosomal ceramidase (InterPro:IPR006823); BEST Arabidopsis thaliana protein match is: ceramidase family protein (TAIR:AT1G07380.1); Has 382 Blast hits to 361 proteins in 130 species: Archae - 0; Bacteria - 100; Metazoa - 154; Fungi - 61; Plants - 30; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT5G58980.1p  transcript_id AT5G58980.1  protein_id AT5G58980.1p  transcript_id AT5G58980.1  
At5g58990	chr5:023815028	0.0	W/23815028-23815309,23815449-23815491,23815698-23815819	AT5G58990.1  CDS  gene_syn K19M22.18, K19M22_18  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52370.1); Has 24 Blast hits to 24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 18; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G58990.1p  transcript_id AT5G58990.1  protein_id AT5G58990.1p  transcript_id AT5G58990.1  
At5g59000	chr5:023818768	0.0	W/23818768-23819240,23819796-23820018	AT5G59000.1  CDS  gene_syn K19M22.19, K19M22_19  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G05830.1); Has 32988 Blast hits to 8776 proteins in 437 species: Archae - 19; Bacteria - 552; Metazoa - 18826; Fungi - 2667; Plants - 1419; Viruses - 966; Other Eukaryotes - 8539 (source: NCBI BLink).  protein_id AT5G59000.1p  transcript_id AT5G59000.1  protein_id AT5G59000.1p  transcript_id AT5G59000.1  
At5g59010	chr5:023822463	0.0	C/23822463-23822499,23822125-23822258,23821892-23821997,23821700-23821785,23821393-23821581,23821135-23821299,23820915-23821028,23820578-23820826	AT5G59010.2  CDS  gene_syn K19M22.7, K19M22_7  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function binding|GO:0005488||IEA  go_function ATP binding|GO:0005524||IEA  product protein kinase-related  note protein kinase-related; FUNCTIONS IN: binding, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tetratricopeptide-like helical (InterPro:IPR011990), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G54030.1); Has 12471 Blast hits to 12340 proteins in 455 species: Archae - 4; Bacteria - 272; Metazoa - 1462; Fungi - 141; Plants - 10156; Viruses - 29; Other Eukaryotes - 407 (source: NCBI BLink).  protein_id AT5G59010.2p  transcript_id AT5G59010.2  protein_id AT5G59010.2p  transcript_id AT5G59010.2  
At5g59010	chr5:023823018	0.0	C/23823018-23823099,23822719-23822927,23822463-23822598,23822125-23822258,23821892-23821997,23821700-23821785,23821393-23821581,23821135-23821299,23820915-23821028,23820578-23820826	AT5G59010.1  CDS  gene_syn K19M22.7, K19M22_7  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function binding|GO:0005488||IEA  go_function ATP binding|GO:0005524||IEA  product protein kinase-related  note protein kinase-related; FUNCTIONS IN: protein tyrosine kinase activity, binding, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G54030.1); Has 21265 Blast hits to 20899 proteins in 886 species: Archae - 6; Bacteria - 1353; Metazoa - 6281; Fungi - 197; Plants - 12179; Viruses - 98; Other Eukaryotes - 1151 (source: NCBI BLink).  protein_id AT5G59010.1p  transcript_id AT5G59010.1  protein_id AT5G59010.1p  transcript_id AT5G59010.1  
At5g59020	chr5:023827543	0.0	C/23827543-23829603,23827160-23827441	AT5G59020.1  CDS  gene_syn K19M22.16, K19M22_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29510.1); Has 76 Blast hits to 76 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 2; Plants - 65; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G59020.1p  transcript_id AT5G59020.1  protein_id AT5G59020.1p  transcript_id AT5G59020.1  
At5g59030	chr5:023833945	0.0	C/23833945-23834457	AT5G59030.1  CDS  gene_syn COPT1, K19M22.24, copper transporter 1  gene COPT1  function encodes a putative copper transport protein that contains copper-binding motif and functionally complements in copper-transport defective yeast strains  go_component membrane|GO:0016020|7499355|ISS  go_process copper ion transport|GO:0006825|7499355|IGI  go_process copper ion transport|GO:0006825||ISS  go_process pollen sperm cell differentiation|GO:0048235|14726516|IMP  go_process root development|GO:0048364|14726516|IMP  go_function copper ion transmembrane transporter activity|GO:0005375|7499355|IGI  go_function copper ion transmembrane transporter activity|GO:0005375||ISS  product COPT1 (copper transporter 1); copper ion transmembrane transporter  note copper transporter 1 (COPT1); FUNCTIONS IN: copper ion transmembrane transporter activity; INVOLVED IN: copper ion transport, pollen sperm cell differentiation, root development; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ctr copper transporter (InterPro:IPR007274); BEST Arabidopsis thaliana protein match is: COPT2; copper ion transmembrane transporter/ high affinity copper ion transmembrane transporter (TAIR:AT3G46900.1); Has 320 Blast hits to 319 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 164; Fungi - 38; Plants - 81; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT5G59030.1p  transcript_id AT5G59030.1  protein_id AT5G59030.1p  transcript_id AT5G59030.1  
At5g59040	chr5:023836724	0.0	W/23836724-23837179	AT5G59040.1  CDS  gene_syn COPT3, K18B18.3, K18B18_3  gene COPT3  function encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast  go_component integral to membrane|GO:0016021||IEA  go_process copper ion transport|GO:0006825||IEA  go_process copper ion transport|GO:0006825||ISS  go_function copper ion transmembrane transporter activity|GO:0005375||ISS  go_function high affinity copper ion transmembrane transporter activity|GO:0015089|12650623|IGI  product COPT3; copper ion transmembrane transporter/ high affinity copper ion transmembrane transporter  note COPT3; FUNCTIONS IN: high affinity copper ion transmembrane transporter activity, copper ion transmembrane transporter activity; INVOLVED IN: copper ion transport; LOCATED IN: integral to membrane; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ctr copper transporter (InterPro:IPR007274); BEST Arabidopsis thaliana protein match is: COPT2; copper ion transmembrane transporter/ high affinity copper ion transmembrane transporter (TAIR:AT3G46900.1); Has 199 Blast hits to 198 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 91; Fungi - 3; Plants - 81; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT5G59040.1p  transcript_id AT5G59040.1  protein_id AT5G59040.1p  transcript_id AT5G59040.1  
At5g59050	chr5:023842292	0.0	C/23842292-23842519,23841849-23842202	AT5G59050.2  CDS  gene_syn K18B18.4, K18B18_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G59050.2p  transcript_id AT5G59050.2  protein_id AT5G59050.2p  transcript_id AT5G59050.2  
At5g59050	chr5:023842292	0.0	C/23842292-23842519,23841978-23842202,23841606-23841828,23839965-23840072,23839494-23839648	AT5G59050.1  CDS  gene_syn K18B18.4, K18B18_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; Has 50 Blast hits to 50 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G59050.1p  transcript_id AT5G59050.1  protein_id AT5G59050.1p  transcript_id AT5G59050.1  
At5g59055	chr5:023844206	0.0	W/23844206-23844277	AT5G59055.1  tRNA  gene_syn 67886.TRNA-ASP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asp (anticodon: GTC)  transcript_id AT5G59055.1  
At5g59060	chr5:023844394	0.0	C/23844394-23844726	AT5G59060.1  CDS  gene_syn K18B18.6, K18B18_6  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18880.1); Has 13 Blast hits to 13 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G59060.1p  transcript_id AT5G59060.1  protein_id AT5G59060.1p  transcript_id AT5G59060.1  
At5g59070	chr5:023845237	0.0	W/23845237-23845722,23846298-23847329	AT5G59070.1  CDS  gene_syn K18B18.2, K18B18_2  go_component endomembrane system|GO:0012505||IEA  go_process biosynthetic process|GO:0009058||IEA  go_process biosynthetic process|GO:0009058||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyl transferase family 1 protein  note glycosyl transferase family 1 protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: glycosyl transferase family 1 protein (TAIR:AT4G19460.1); Has 6036 Blast hits to 6036 proteins in 1009 species: Archae - 345; Bacteria - 4309; Metazoa - 15; Fungi - 11; Plants - 94; Viruses - 0; Other Eukaryotes - 1262 (source: NCBI BLink).  protein_id AT5G59070.1p  transcript_id AT5G59070.1  protein_id AT5G59070.1p  transcript_id AT5G59070.1  
At5g59080	chr5:023848266	0.0	C/23848266-23848403,23848130-23848172,23847876-23848000,23847691-23847792	AT5G59080.1  CDS  gene_syn K18B18.8, K18B18_8  go_component chloroplast|GO:0009507||IEA  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G02020.1); Has 42 Blast hits to 42 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G59080.1p  transcript_id AT5G59080.1  protein_id AT5G59080.1p  transcript_id AT5G59080.1  
At5g59090	chr5:023855143	0.0	C/23855143-23855235,23854876-23854970,23854689-23854780,23854352-23854598,23853732-23854218,23853557-23853654,23853253-23853468,23853049-23853160,23852763-23852970,23852125-23852681	AT5G59090.3  CDS  gene_syn ATSBT4.12, K18B18.5, K18B18_5  gene ATSBT4.12  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component apoplast|GO:0048046||IDA  go_process proteolysis|GO:0006508||ISS  product ATSBT4.12; identical protein binding / serine-type endopeptidase  note ATSBT4.12; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: apoplast, nucleus, cytoplasm; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: ATSBT4.13 (ARABIDOPSIS THALIANA SUBTILASE 4.13); identical protein binding / serine-type endopeptidase (TAIR:AT5G59120.1); Has 4353 Blast hits to 3839 proteins in 705 species: Archae - 135; Bacteria - 2616; Metazoa - 60; Fungi - 162; Plants - 873; Viruses - 0; Other Eukaryotes - 507 (source: NCBI BLink).  protein_id AT5G59090.3p  transcript_id AT5G59090.3  protein_id AT5G59090.3p  transcript_id AT5G59090.3  
At5g59090	chr5:023855143	0.0	C/23855143-23855235,23854876-23854970,23854689-23854780,23854352-23854604,23853732-23854218,23853557-23853654,23853253-23853468,23853049-23853160,23852763-23852970,23852125-23852666	AT5G59090.2  CDS  gene_syn ATSBT4.12, K18B18.5, K18B18_5  gene ATSBT4.12  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component apoplast|GO:0048046||IDA  go_process proteolysis|GO:0006508||ISS  product ATSBT4.12; identical protein binding / serine-type endopeptidase  note ATSBT4.12; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: apoplast, nucleus, cytoplasm; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: ATSBT4.13 (ARABIDOPSIS THALIANA SUBTILASE 4.13); identical protein binding / serine-type endopeptidase (TAIR:AT5G59120.1); Has 4555 Blast hits to 4020 proteins in 713 species: Archae - 157; Bacteria - 2675; Metazoa - 63; Fungi - 178; Plants - 882; Viruses - 0; Other Eukaryotes - 600 (source: NCBI BLink).  protein_id AT5G59090.2p  transcript_id AT5G59090.2  protein_id AT5G59090.2p  transcript_id AT5G59090.2  
At5g59090	chr5:023855143	0.0	C/23855143-23855235,23854876-23854970,23854689-23854780,23854352-23854604,23853732-23854218,23853557-23853654,23853253-23853468,23853049-23853160,23852763-23852970,23852125-23852681	AT5G59090.1  CDS  gene_syn ATSBT4.12, K18B18.5, K18B18_5  gene ATSBT4.12  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component apoplast|GO:0048046||IDA  go_process proteolysis|GO:0006508||ISS  product ATSBT4.12; identical protein binding / serine-type endopeptidase  note ATSBT4.12; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: apoplast, nucleus, cytoplasm; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: ATSBT4.13 (ARABIDOPSIS THALIANA SUBTILASE 4.13); identical protein binding / serine-type endopeptidase (TAIR:AT5G59120.1); Has 4384 Blast hits to 3866 proteins in 705 species: Archae - 135; Bacteria - 2617; Metazoa - 62; Fungi - 180; Plants - 882; Viruses - 0; Other Eukaryotes - 508 (source: NCBI BLink).  protein_id AT5G59090.1p  transcript_id AT5G59090.1  protein_id AT5G59090.1p  transcript_id AT5G59090.1  
At5g59100	chr5:023861989	0.0	C/23861989-23862087,23861767-23861861,23861589-23861680,23861139-23861391,23860544-23861045,23860352-23860449,23860059-23860274,23859866-23859977,23859582-23859795,23858951-23859495	AT5G59100.1  CDS  gene_syn K18B18.7, K18B18_7  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product subtilase family protein  note subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT3G46840.1); Has 4100 Blast hits to 3779 proteins in 681 species: Archae - 127; Bacteria - 2305; Metazoa - 100; Fungi - 193; Plants - 863; Viruses - 0; Other Eukaryotes - 512 (source: NCBI BLink).  protein_id AT5G59100.1p  transcript_id AT5G59100.1  protein_id AT5G59100.1p  transcript_id AT5G59100.1  
At5g59105	chr5:023862933	0.0	C/23862933-23863029,23862546-23862838	AT5G59105.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15757.1); Has 20 Blast hits to 20 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G59105.1p  transcript_id AT5G59105.1  protein_id AT5G59105.1p  transcript_id AT5G59105.1  
At5g59110	chr5:023863530	0.0	C/23863530-23864048	AT5G59110.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product subtilisin-like serine protease-related  note subtilisin-like serine protease-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Peptidase S8, subtilisin-related (InterPro:IPR015500); BEST Arabidopsis thaliana protein match is: ATSBT4.12; identical protein binding / serine-type endopeptidase (TAIR:AT5G59090.3); Has 761 Blast hits to 756 proteins in 40 species: Archae - 0; Bacteria - 21; Metazoa - 0; Fungi - 0; Plants - 739; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G59110.1p  transcript_id AT5G59110.1  protein_id AT5G59110.1p  transcript_id AT5G59110.1  
At5g59120	chr5:023867931	0.0	C/23867931-23868020,23867716-23867810,23867526-23867617,23867191-23867443,23866535-23867021,23866347-23866444,23866029-23866244,23865826-23865937,23865539-23865746,23864897-23865444	AT5G59120.1  CDS  gene_syn ARABIDOPSIS THALIANA SUBTILASE 4.13, ATSBT4.13  gene ATSBT4.13  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product ATSBT4.13 (ARABIDOPSIS THALIANA SUBTILASE 4.13); identical protein binding / serine-type endopeptidase  note ARABIDOPSIS THALIANA SUBTILASE 4.13 (ATSBT4.13); FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: ATSBT4.12; identical protein binding / serine-type endopeptidase (TAIR:AT5G59090.1); Has 4326 Blast hits to 3836 proteins in 658 species: Archae - 138; Bacteria - 2503; Metazoa - 51; Fungi - 210; Plants - 884; Viruses - 0; Other Eukaryotes - 540 (source: NCBI BLink).  protein_id AT5G59120.1p  transcript_id AT5G59120.1  protein_id AT5G59120.1p  transcript_id AT5G59120.1  
At5g59130	chr5:023873590	0.0	C/23873590-23873691,23873412-23873506,23873237-23873328,23872667-23872907,23871826-23872309,23871646-23871743,23871343-23871552,23871141-23871252,23870849-23871053,23870192-23870751	AT5G59130.1  CDS  gene_syn MNC17.3, MNC17_3  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product subtilase family protein  note subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259), Peptidase S8, subtilisin-related (InterPro:IPR015500); BEST Arabidopsis thaliana protein match is: ATSBT4.13 (ARABIDOPSIS THALIANA SUBTILASE 4.13); identical protein binding / serine-type endopeptidase (TAIR:AT5G59120.1); Has 3513 Blast hits to 3143 proteins in 549 species: Archae - 91; Bacteria - 2088; Metazoa - 30; Fungi - 104; Plants - 856; Viruses - 0; Other Eukaryotes - 344 (source: NCBI BLink).  protein_id AT5G59130.1p  transcript_id AT5G59130.1  protein_id AT5G59130.1p  transcript_id AT5G59130.1  
At5g59140	chr5:023875526	0.0	C/23875526-23875631,23875150-23875255,23874696-23874774	AT5G59140.1  CDS  gene_syn MNC17.5, MNC17_5  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  product SKP1 family protein  note SKP1 family protein; FUNCTIONS IN: protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); Has 313 Blast hits to 313 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 188; Fungi - 77; Plants - 28; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT5G59140.1p  transcript_id AT5G59140.1  protein_id AT5G59140.1p  transcript_id AT5G59140.1  
At5g59150	chr5:023876858	0.0	W/23876858-23877022,23877756-23878244	AT5G59150.1  CDS  gene_syn ARABIDOPSIS RAB GTPASE HOMOLOG A2D, ATRAB-A2D, ATRABA2D, HOARABIDOPSIS RAB GTPASE HOMOLOG A2D, MNC17.6, MNC17_6  gene ATRABA2D  go_component plasma membrane|GO:0005886|17317660|IDA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_component endosome|GO:0005768|18239134|IDA  go_component cell plate|GO:0009504|18239134|IDA  go_function GTP binding|GO:0005525||ISS  product ATRABA2D (HOARABIDOPSIS RAB GTPASE HOMOLOG A2D); GTP binding  note HOARABIDOPSIS RAB GTPASE HOMOLOG A2D (ATRABA2D); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: endosome, plasma membrane, cell plate; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C); GTP binding (TAIR:AT3G46830.1); Has 23292 Blast hits to 23257 proteins in 639 species: Archae - 17; Bacteria - 111; Metazoa - 12880; Fungi - 3021; Plants - 2145; Viruses - 19; Other Eukaryotes - 5099 (source: NCBI BLink).  protein_id AT5G59150.1p  transcript_id AT5G59150.1  protein_id AT5G59150.1p  transcript_id AT5G59150.1  
At5g59160	chr5:023879567	0.0	W/23879567-23879771,23880275-23880834,23880929-23881102	AT5G59160.1  CDS  gene_syn MNC17.9, MNC17_9, PPO, PROTOPORPHYRINOGEN OXIDASE, TOPP2  gene TOPP2  function Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers.  go_component protein phosphatase type 1 complex|GO:0000164|7678768|ISS  go_process protein amino acid dephosphorylation|GO:0006470|7678768|TAS  go_function protein serine/threonine phosphatase activity|GO:0004722|7678768|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product TOPP2; protein serine/threonine phosphatase  note TOPP2; FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein phosphatase type 1 complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: TOPP5; protein serine/threonine phosphatase (TAIR:AT3G46820.1); Has 5586 Blast hits to 5452 proteins in 453 species: Archae - 49; Bacteria - 387; Metazoa - 2058; Fungi - 934; Plants - 616; Viruses - 12; Other Eukaryotes - 1530 (source: NCBI BLink).  protein_id AT5G59160.1p  transcript_id AT5G59160.1  protein_id AT5G59160.1p  transcript_id AT5G59160.1  
At5g59160	chr5:023879567	0.0	W/23879567-23879771,23880275-23880834,23880929-23881102	AT5G59160.2  CDS  gene_syn MNC17.9, MNC17_9, PPO, PROTOPORPHYRINOGEN OXIDASE, TOPP2  gene TOPP2  function Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers.  go_component protein phosphatase type 1 complex|GO:0000164|7678768|ISS  go_process protein amino acid dephosphorylation|GO:0006470|7678768|TAS  go_function protein serine/threonine phosphatase activity|GO:0004722|7678768|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product TOPP2; protein serine/threonine phosphatase  note TOPP2; FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein phosphatase type 1 complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: TOPP5; protein serine/threonine phosphatase (TAIR:AT3G46820.1); Has 5586 Blast hits to 5452 proteins in 453 species: Archae - 49; Bacteria - 387; Metazoa - 2058; Fungi - 934; Plants - 616; Viruses - 12; Other Eukaryotes - 1530 (source: NCBI BLink).  protein_id AT5G59160.2p  transcript_id AT5G59160.2  protein_id AT5G59160.2p  transcript_id AT5G59160.2  
At5g59160	chr5:023879567	0.0	W/23879567-23879771,23880275-23880834,23880929-23881102	AT5G59160.3  CDS  gene_syn MNC17.9, MNC17_9, PPO, PROTOPORPHYRINOGEN OXIDASE, TOPP2  gene TOPP2  function Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers.  go_component protein phosphatase type 1 complex|GO:0000164|7678768|ISS  go_process protein amino acid dephosphorylation|GO:0006470|7678768|TAS  go_function protein serine/threonine phosphatase activity|GO:0004722|7678768|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product TOPP2; protein serine/threonine phosphatase  note TOPP2; FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein phosphatase type 1 complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: TOPP5; protein serine/threonine phosphatase (TAIR:AT3G46820.1); Has 5586 Blast hits to 5452 proteins in 453 species: Archae - 49; Bacteria - 387; Metazoa - 2058; Fungi - 934; Plants - 616; Viruses - 12; Other Eukaryotes - 1530 (source: NCBI BLink).  protein_id AT5G59160.3p  transcript_id AT5G59160.3  protein_id AT5G59160.3p  transcript_id AT5G59160.3  
At5g59170	chr5:023882045	0.0	W/23882045-23882911	AT5G59170.1  CDS  gene_syn MNC17.8, MNC17_8  go_component endomembrane system|GO:0012505||IEA  product proline-rich family protein  note proline-rich family protein; LOCATED IN: endomembrane system; Has 98493 Blast hits to 28173 proteins in 1348 species: Archae - 273; Bacteria - 13892; Metazoa - 39650; Fungi - 12425; Plants - 15041; Viruses - 2857; Other Eukaryotes - 14355 (source: NCBI BLink).  protein_id AT5G59170.1p  transcript_id AT5G59170.1  protein_id AT5G59170.1p  transcript_id AT5G59170.1  
At5g59180	chr5:023883499	0.0	W/23883499-23883614,23884190-23884355,23884441-23884491,23884591-23884656,23884750-23884818,23884914-23884976	AT5G59180.1  CDS  gene_syn MNC17.16, MNC17_16, NRPB7  gene NRPB7  function Non-catalytic subunit specific to DNA-directed RNA polymerase II; the ortholog of budding yeast RPB7  go_process transcription|GO:0006350||IEA  go_function RNA binding|GO:0003723||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_component DNA-directed RNA polymerase II, core complex|GO:0005665|19110459|IPI  go_process transcription|GO:0006350||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product NRPB7; DNA-directed RNA polymerase/ RNA binding  note NRPB7; FUNCTIONS IN: DNA-directed RNA polymerase activity, RNA binding; INVOLVED IN: transcription; LOCATED IN: DNA-directed RNA polymerase II, core complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), S1, RNA binding (InterPro:IPR003029), RNA polymerase Rpb7, N-terminal (InterPro:IPR005576); BEST Arabidopsis thaliana protein match is: NRPE7; DNA-directed RNA polymerase (TAIR:AT4G14660.1); Has 598 Blast hits to 598 proteins in 212 species: Archae - 110; Bacteria - 1; Metazoa - 128; Fungi - 153; Plants - 76; Viruses - 3; Other Eukaryotes - 127 (source: NCBI BLink).  protein_id AT5G59180.1p  transcript_id AT5G59180.1  protein_id AT5G59180.1p  transcript_id AT5G59180.1  
At5g59190	chr5:023885855	0.0	W/23885855-23885931,23886036-23886127,23886231-23886477,23886567-23887056,23887153-23887247,23887349-23887567,23887640-23887751,23887841-23888060,23888144-23888673	AT5G59190.1  CDS  gene_syn MNC17.18, MNC17_18  go_process response to cadmium ion|GO:0046686|17075075|IEP  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_component cellular_component|GO:0005575||ND  go_process proteolysis|GO:0006508||ISS  product subtilase family protein  note subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: response to cadmium ion, proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259), Peptidase S8, subtilisin-related (InterPro:IPR015500); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT3G46850.1); Has 3790 Blast hits to 3562 proteins in 629 species: Archae - 122; Bacteria - 2027; Metazoa - 72; Fungi - 170; Plants - 858; Viruses - 0; Other Eukaryotes - 541 (source: NCBI BLink).  protein_id AT5G59190.1p  transcript_id AT5G59190.1  protein_id AT5G59190.1p  transcript_id AT5G59190.1  
At5g59200	chr5:023888793	0.0	C/23888793-23890565	AT5G59200.1  CDS  gene_syn MNC17.11, MNC17_11  go_component endomembrane system|GO:0012505||IEA  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G37380.1); Has 13457 Blast hits to 5128 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 127; Fungi - 37; Plants - 13011; Viruses - 0; Other Eukaryotes - 282 (source: NCBI BLink).  protein_id AT5G59200.1p  transcript_id AT5G59200.1  protein_id AT5G59200.1p  transcript_id AT5G59200.1  
At5g59210	chr5:023893584	0.0	C/23893584-23893619,23893399-23893486,23893265-23893311,23892910-23892999,23892774-23892827,23892520-23892597,23892363-23892431,23892112-23892267,23891904-23892030,23891671-23891702,23891378-23891572,23891163-23891303,23890963-23891072,23890802-23890880	AT5G59210.2  CDS  gene_syn MNC17.12, MNC17_12  go_process biological_process|GO:0008150||ND  product myosin heavy chain-related  note myosin heavy chain-related; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12150.1); Has 48721 Blast hits to 27310 proteins in 1375 species: Archae - 464; Bacteria - 4322; Metazoa - 26794; Fungi - 3439; Plants - 1584; Viruses - 141; Other Eukaryotes - 11977 (source: NCBI BLink).  protein_id AT5G59210.2p  transcript_id AT5G59210.2  protein_id AT5G59210.2p  transcript_id AT5G59210.2  
At5g59210	chr5:023893584	0.0	C/23893584-23893619,23893399-23893486,23893265-23893311,23892910-23892999,23892774-23892827,23892520-23892597,23892363-23892431,23892112-23892267,23891904-23892030,23891671-23891705,23891378-23891572,23891163-23891303,23890963-23891072,23890802-23890880	AT5G59210.1  CDS  gene_syn MNC17.12, MNC17_12  go_process biological_process|GO:0008150||ND  product myosin heavy chain-related  note myosin heavy chain-related; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05320.3); Has 52386 Blast hits to 29309 proteins in 1451 species: Archae - 516; Bacteria - 4841; Metazoa - 28674; Fungi - 3719; Plants - 1637; Viruses - 146; Other Eukaryotes - 12853 (source: NCBI BLink).  protein_id AT5G59210.1p  transcript_id AT5G59210.1  protein_id AT5G59210.1p  transcript_id AT5G59210.1  
At5g59220	chr5:023896021	0.0	C/23896021-23896497,23895635-23895937,23895160-23895265,23894672-23895027	AT5G59220.1  CDS  gene_syn MNC17.13, MNC17_13  go_component chloroplast|GO:0009507||IEA  go_function catalytic activity|GO:0003824||IEA  go_process response to water deprivation|GO:0009414|18552355|IEP  go_process response to abscisic acid stimulus|GO:0009737|16258012|IEP  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: response to water deprivation, response to abscisic acid stimulus; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT1G07430.1); Has 4422 Blast hits to 4418 proteins in 300 species: Archae - 0; Bacteria - 143; Metazoa - 1402; Fungi - 536; Plants - 1369; Viruses - 7; Other Eukaryotes - 965 (source: NCBI BLink).  protein_id AT5G59220.1p  transcript_id AT5G59220.1  protein_id AT5G59220.1p  transcript_id AT5G59220.1  
At5g59230	chr5:023901555	0.0	W/23901555-23901683,23901772-23902095,23902193-23902276,23902356-23902379	AT5G59230.1  CDS  gene_syn MNC17.14, MNC17_14  go_component transcription factor TFIIA complex|GO:0005672||IEA  go_process transcription initiation from RNA polymerase II promoter|GO:0006367||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  product transcription factor-related  note transcription factor-related; FUNCTIONS IN: RNA polymerase II transcription factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: transcription factor TFIIA complex; CONTAINS InterPro DOMAIN/s: Transcription factor IIA, alpha/beta subunit (InterPro:IPR004855), Transcription factor IIA, beta-barrel (InterPro:IPR009088), Transcription factor IIA, alpha subunit, N-terminal (InterPro:IPR013028), Transcription factor IIA, helical (InterPro:IPR009083); BEST Arabidopsis thaliana protein match is: transcription factor IIA large subunit / TFIIA large subunit (TFIIA-L) (TAIR:AT1G07480.2); Has 404 Blast hits to 372 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 212; Fungi - 89; Plants - 65; Viruses - 2; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT5G59230.1p  transcript_id AT5G59230.1  protein_id AT5G59230.1p  transcript_id AT5G59230.1  
At5g59240	chr5:023903667	0.0	C/23903667-23903670,23903467-23903539,23902809-23903282,23902626-23902707	AT5G59240.1  CDS  gene_syn MNC17.7, MNC17_7  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S8 (RPS8B)  note 40S ribosomal protein S8 (RPS8B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8e (InterPro:IPR001047), Ribosomal protein S8e, conserved site (InterPro:IPR018283); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S8 (RPS8A) (TAIR:AT5G20290.1); Has 791 Blast hits to 787 proteins in 321 species: Archae - 162; Bacteria - 0; Metazoa - 294; Fungi - 110; Plants - 75; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).  protein_id AT5G59240.1p  transcript_id AT5G59240.1  protein_id AT5G59240.1p  transcript_id AT5G59240.1  
At5g59250	chr5:023903958	0.0	W/23903958-23904155,23904239-23904342,23904534-23904612,23904700-23904759,23904846-23904912,23905000-23905124,23905222-23905323,23905392-23905769,23905850-23905897,23906000-23906062,23906165-23906245,23906331-23906429,23906506-23906643,23906719-23906853	AT5G59250.1  CDS  gene_syn MNC17.15, MNC17_15  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product sugar transporter family protein  note sugar transporter family protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter family protein (TAIR:AT5G17010.3); Has 27429 Blast hits to 27047 proteins in 1483 species: Archae - 420; Bacteria - 15136; Metazoa - 3762; Fungi - 4998; Plants - 1535; Viruses - 2; Other Eukaryotes - 1576 (source: NCBI BLink).  protein_id AT5G59250.1p  transcript_id AT5G59250.1  protein_id AT5G59250.1p  transcript_id AT5G59250.1  
At5g59260	chr5:023907901	0.0	C/23907901-23909925	AT5G59260.1  CDS  gene_syn MNC17.17, MNC17_17  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function kinase activity|GO:0016301||ISS  product lectin protein kinase, putative  note lectin protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, sugar binding, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin protein kinase family protein (TAIR:AT5G59270.1); Has 83458 Blast hits to 82451 proteins in 3022 species: Archae - 48; Bacteria - 7264; Metazoa - 36105; Fungi - 6394; Plants - 19327; Viruses - 365; Other Eukaryotes - 13955 (source: NCBI BLink).  protein_id AT5G59260.1p  transcript_id AT5G59260.1  protein_id AT5G59260.1p  transcript_id AT5G59260.1  
At5g59270	chr5:023912482	0.0	C/23912482-23913235,23911151-23912403	AT5G59270.1  CDS  gene_syn MNC17.20, MNC17_20  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product lectin protein kinase family protein  note lectin protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin protein kinase, putative (TAIR:AT5G59260.1); Has 89647 Blast hits to 85290 proteins in 3151 species: Archae - 55; Bacteria - 7980; Metazoa - 38094; Fungi - 6773; Plants - 20777; Viruses - 977; Other Eukaryotes - 14991 (source: NCBI BLink).  protein_id AT5G59270.1p  transcript_id AT5G59270.1  protein_id AT5G59270.1p  transcript_id AT5G59270.1  
At5g59280	chr5:023914141	0.0	C/23914141-23915139	AT5G59280.1  CDS  gene_syn APUM16, Arabidopsis Pumilio 16, MNC17.19, MNC17_19  gene APUM16  go_function RNA binding|GO:0003723||IEA  go_function binding|GO:0005488||IEA  go_function RNA binding|GO:0003723||ISS  product APUM16 (Arabidopsis Pumilio 16); RNA binding / binding  note Arabidopsis Pumilio 16 (APUM16); FUNCTIONS IN: RNA binding, binding; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding region (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: APUM17 (Arabidopsis Pumilio 17); RNA binding / binding (TAIR:AT1G35850.1); Has 1554 Blast hits to 894 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 442; Fungi - 382; Plants - 344; Viruses - 0; Other Eukaryotes - 386 (source: NCBI BLink).  protein_id AT5G59280.1p  transcript_id AT5G59280.1  protein_id AT5G59280.1p  transcript_id AT5G59280.1  
At5g59290	chr5:023917873	0.0	C/23917873-23917953,23917474-23917560,23917317-23917404,23917125-23917216,23916979-23917043,23916802-23916890,23916631-23916708,23916444-23916537,23916228-23916358,23916090-23916130,23915814-23915996	AT5G59290.1  CDS  gene_syn ATUXS3, MNC17.21, MNC17_21, UDP-GLUCURONIC ACID DECARBOXYLASE 3, UXS3  gene UXS3  function Encodes an isoform of UDP-glucuronic acid decarboxylase, which is predicted to be cytosolic by PSORT. This enzyme produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.  go_component cytosol|GO:0005829|12481102|TAS  go_component cytosol|GO:0005829|15655675|IDA  go_process nucleotide-sugar metabolic process|GO:0009225||ISS  go_process D-xylose metabolic process|GO:0042732|12481102|IDA  go_function catalytic activity|GO:0003824||ISS  go_function UDP-glucuronate decarboxylase activity|GO:0048040|12481102|IDA  product UXS3 (UDP-GLUCURONIC ACID DECARBOXYLASE 3); UDP-glucuronate decarboxylase/ catalytic  note UDP-GLUCURONIC ACID DECARBOXYLASE 3 (UXS3); FUNCTIONS IN: UDP-glucuronate decarboxylase activity, catalytic activity; INVOLVED IN: D-xylose metabolic process, nucleotide-sugar metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: UXS5; UDP-glucuronate decarboxylase/ catalytic (TAIR:AT3G46440.2); Has 30537 Blast hits to 30497 proteins in 1741 species: Archae - 510; Bacteria - 13956; Metazoa - 579; Fungi - 259; Plants - 810; Viruses - 70; Other Eukaryotes - 14353 (source: NCBI BLink).  protein_id AT5G59290.1p  transcript_id AT5G59290.1  protein_id AT5G59290.1p  transcript_id AT5G59290.1  
At5g59290	chr5:023917873	0.0	C/23917873-23917998,23917474-23917560,23917317-23917404,23917125-23917216,23916979-23917043,23916802-23916890,23916631-23916708,23916444-23916537,23916228-23916358,23916090-23916130,23915814-23915996	AT5G59290.2  CDS  gene_syn ATUXS3, MNC17.21, MNC17_21, UDP-GLUCURONIC ACID DECARBOXYLASE 3, UXS3  gene UXS3  function Encodes an isoform of UDP-glucuronic acid decarboxylase, which is predicted to be cytosolic by PSORT. This enzyme produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.  go_component cytosol|GO:0005829|12481102|TAS  go_component cytosol|GO:0005829|15655675|IDA  go_process nucleotide-sugar metabolic process|GO:0009225||ISS  go_process D-xylose metabolic process|GO:0042732|12481102|IDA  go_function catalytic activity|GO:0003824||ISS  go_function UDP-glucuronate decarboxylase activity|GO:0048040|12481102|IDA  product UXS3 (UDP-GLUCURONIC ACID DECARBOXYLASE 3); UDP-glucuronate decarboxylase/ catalytic  note UDP-GLUCURONIC ACID DECARBOXYLASE 3 (UXS3); FUNCTIONS IN: UDP-glucuronate decarboxylase activity, catalytic activity; INVOLVED IN: D-xylose metabolic process, nucleotide-sugar metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: UXS5; UDP-glucuronate decarboxylase/ catalytic (TAIR:AT3G46440.2); Has 30525 Blast hits to 30485 proteins in 1741 species: Archae - 510; Bacteria - 13950; Metazoa - 579; Fungi - 259; Plants - 810; Viruses - 70; Other Eukaryotes - 14347 (source: NCBI BLink).  protein_id AT5G59290.2p  transcript_id AT5G59290.2  protein_id AT5G59290.2p  transcript_id AT5G59290.2  
At5g59300	chr5:023921100	0.0	C/23921100-23921291,23920963-23921012,23920471-23920568,23920273-23920373,23920032-23920109,23919868-23919945	AT5G59300.1  CDS  gene_syn ARABIDOPSIS THALIANA UBIQUITIN CARRIER PROTEIN 7, ATUBC7, MNC17.22, MNC17_22, UBC7, UBIQUITIN CARRIER PROTEIN 7  gene UBC7  function ubiquitin conjugating enzyme E2  go_component intracellular|GO:0005622||TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|8647807|ISS  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|8382544|ISS  product UBC7 (UBIQUITIN CARRIER PROTEIN 7); protein binding / ubiquitin-protein ligase  note UBIQUITIN CARRIER PROTEIN 7 (UBC7); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC13 (ubiquitin-conjugating enzyme 13); ubiquitin-protein ligase (TAIR:AT3G46460.1); Has 7380 Blast hits to 7363 proteins in 303 species: Archae - 0; Bacteria - 0; Metazoa - 3503; Fungi - 1453; Plants - 1139; Viruses - 19; Other Eukaryotes - 1266 (source: NCBI BLink).  protein_id AT5G59300.1p  transcript_id AT5G59300.1  protein_id AT5G59300.1p  transcript_id AT5G59300.1  
At5g59305	chr5:023923232	0.0	W/23923232-23923316,23923457-23923524,23923602-23923679	AT5G59305.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G59305.1p  transcript_id AT5G59305.1  protein_id AT5G59305.1p  transcript_id AT5G59305.1  
At5g59310	chr5:023925444	0.0	C/23925444-23925772,23925296-23925305	AT5G59310.1  CDS  gene_syn LIPID TRANSFER PROTEIN 4, LTP4, MNC17.4, MNC17_4  gene LTP4  function Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The mRNA is present in flowers and siliques, and is strongly up-regulated by abscisic acid. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.  go_component endomembrane system|GO:0012505||IEA  go_function lipid binding|GO:0008289||IEA  go_process lipid transport|GO:0006869|10940464|TAS  go_process response to water deprivation|GO:0009414|18552355|IEP  go_process response to abscisic acid stimulus|GO:0009737|10940464|IEP  product LTP4 (LIPID TRANSFER PROTEIN 4); lipid binding  note LIPID TRANSFER PROTEIN 4 (LTP4); FUNCTIONS IN: lipid binding; INVOLVED IN: response to water deprivation, response to abscisic acid stimulus, lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding (TAIR:AT5G59320.1); Has 880 Blast hits to 879 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 876; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G59310.1p  transcript_id AT5G59310.1  protein_id AT5G59310.1p  transcript_id AT5G59310.1  
At5g59320	chr5:023929051	0.0	W/23929051-23929388,23929483-23929492	AT5G59320.1  CDS  gene_syn LIPID TRANSFER PROTEIN 3, LTP3, MNC17.10, MNC17_10  gene LTP3  function Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.  go_component apoplast|GO:0048046|18538804|IDA  go_function lipid binding|GO:0008289||IEA  go_component cell wall|GO:0005618|10940464|TAS  go_process response to water deprivation|GO:0009414|18552355|IEP  go_process response to abscisic acid stimulus|GO:0009737|10940464|IEP  product LTP3 (LIPID TRANSFER PROTEIN 3); lipid binding  note LIPID TRANSFER PROTEIN 3 (LTP3); FUNCTIONS IN: lipid binding; INVOLVED IN: response to water deprivation, response to abscisic acid stimulus; LOCATED IN: cell wall, apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: LTP4 (LIPID TRANSFER PROTEIN 4); lipid binding (TAIR:AT5G59310.1); Has 896 Blast hits to 895 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 892; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G59320.1p  transcript_id AT5G59320.1  protein_id AT5G59320.1p  transcript_id AT5G59320.1  
At5g59330	chr5:023931414	0.0	W/23931414-23931677	AT5G59330.1  CDS  gene_syn MNC17.24, MNC17_24  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_function lipid binding|GO:0008289||IEA  product lipid binding  note lipid binding; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, shoot apex, embryo, sepal, leaf; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: LTP4 (LIPID TRANSFER PROTEIN 4); lipid binding (TAIR:AT5G59310.1).  protein_id AT5G59330.1p  transcript_id AT5G59330.1  protein_id AT5G59330.1p  transcript_id AT5G59330.1  
At5g59340	chr5:023934327	0.0	C/23934327-23934627,23933408-23933889	AT5G59340.1  CDS  gene_syn MNC17.25, MNC17_25, WOX2, WUSCHEL RELATED HOMEOBOX 2  gene WOX2  function Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. WOX2 has a putative Zinc finger domain downstream of the homeodomain. Transcripts are expressed in the egg cell, the zygote and the apical cell lineage and are reduced in met3-1 early embryos. This gene is necessary for cell divisions that form the apical embryo domain.  go_component nucleus|GO:0005634||IEA  go_process positive regulation of cell proliferation|GO:0008284|17706632|IGI  go_process embryonic pattern specification|GO:0009880|14711878|IMP  go_process longitudinal axis specification|GO:0009942|14711878|IMP  go_process apical cell fate commitment|GO:0010654|14711878|IMP  go_process cotyledon development|GO:0048825|17706632|IGI  go_function transcription factor activity|GO:0003700|11118137|ISS  product WOX2 (WUSCHEL RELATED HOMEOBOX 2); transcription factor  note WUSCHEL RELATED HOMEOBOX 2 (WOX2); FUNCTIONS IN: transcription factor activity; INVOLVED IN: apical cell fate commitment, positive regulation of cell proliferation, cotyledon development, embryonic pattern specification, longitudinal axis specification; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WOX1 (WUSCHEL related homeobox 1); transcription factor (TAIR:AT3G18010.1); Has 637 Blast hits to 637 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 637; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G59340.1p  transcript_id AT5G59340.1  protein_id AT5G59340.1p  transcript_id AT5G59340.1  
At5g59350	chr5:023941132	0.0	W/23941132-23941995	AT5G59350.1  CDS  gene_syn F2O15.1, F2O15_1  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 21 Blast hits to 21 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G59350.1p  transcript_id AT5G59350.1  protein_id AT5G59350.1p  transcript_id AT5G59350.1  
At5g59360	chr5:023945595	0.0	C/23945595-23946059	AT5G59360.1  CDS  gene_syn F2O15.2, F2O15_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G59360.1p  transcript_id AT5G59360.1  protein_id AT5G59360.1p  transcript_id AT5G59360.1  
At5g59370	chr5:023950109	0.0	W/23950109-23950168,23950260-23950653,23950802-23951415,23951521-23951586	AT5G59370.1  CDS  gene_syn ACT4, ACTIN 4, F2O15.3, F2O15_3  gene ACT4  function Encodes one of eight Arabidopsis actins. ACT4 belongs to the reproductive actin subclass which is predominantly expressed in developing and reproductive tissues, such as pollen, pollen tubes, ovules, and developing seeds. Expression of the ACT4/GUS fusion was restricted to young vascular tissues, tapetum, and developing and mature pollen.  go_component mitochondrion|GO:0005739|14671022|IDA  go_process actin cytoskeleton organization|GO:0030036||TAS  go_function structural constituent of cytoskeleton|GO:0005200|8771777|ISS  product ACT4 (ACTIN 4); structural constituent of cytoskeleton  note ACTIN 4 (ACT4); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: actin cytoskeleton organization; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: ACT12 (ACTIN-12); structural constituent of cytoskeleton (TAIR:AT3G46520.1); Has 11104 Blast hits to 10812 proteins in 2294 species: Archae - 8; Bacteria - 3; Metazoa - 4919; Fungi - 2961; Plants - 1101; Viruses - 2; Other Eukaryotes - 2110 (source: NCBI BLink).  protein_id AT5G59370.1p  transcript_id AT5G59370.1  protein_id AT5G59370.1p  transcript_id AT5G59370.1  
At5g59370	chr5:023950109	0.0	W/23950109-23950168,23950260-23950653,23950802-23951415,23951521-23951586	AT5G59370.2  CDS  gene_syn ACT4, ACTIN 4, F2O15.3, F2O15_3  gene ACT4  function Encodes one of eight Arabidopsis actins. ACT4 belongs to the reproductive actin subclass which is predominantly expressed in developing and reproductive tissues, such as pollen, pollen tubes, ovules, and developing seeds. Expression of the ACT4/GUS fusion was restricted to young vascular tissues, tapetum, and developing and mature pollen.  go_component mitochondrion|GO:0005739|14671022|IDA  go_process actin cytoskeleton organization|GO:0030036||TAS  go_function structural constituent of cytoskeleton|GO:0005200|8771777|ISS  product ACT4 (ACTIN 4); structural constituent of cytoskeleton  note ACTIN 4 (ACT4); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: actin cytoskeleton organization; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: ACT12 (ACTIN-12); structural constituent of cytoskeleton (TAIR:AT3G46520.1); Has 11104 Blast hits to 10812 proteins in 2294 species: Archae - 8; Bacteria - 3; Metazoa - 4919; Fungi - 2961; Plants - 1101; Viruses - 2; Other Eukaryotes - 2110 (source: NCBI BLink).  protein_id AT5G59370.2p  transcript_id AT5G59370.2  protein_id AT5G59370.2p  transcript_id AT5G59370.2  
At5g59380	chr5:023952321	0.0	W/23952321-23952629,23953039-23953161,23953240-23953485	AT5G59380.1  CDS  gene_syn F2O15.4, F2O15_4, MBD6  gene MBD6  function Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.  go_component perinucleolar chromocenter|GO:0010370|15805479|IDA  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  go_function methyl-CpG binding|GO:0008327|12787239|IDA  go_function methyl-CpG binding|GO:0008327|12787239|ISS  go_function DNA demethylase activity|GO:0051747|12787239|IDA  product MBD6; DNA binding / DNA demethylase/ methyl-CpG binding  note MBD6; FUNCTIONS IN: DNA demethylase activity, methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: perinucleolar chromocenter; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); BEST Arabidopsis thaliana protein match is: MBD5 (METHYL-CPG-BINDING DOMAIN PROTEIN 5); DNA binding / methyl-CpG binding (TAIR:AT3G46580.1); Has 213 Blast hits to 210 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 181; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G59380.1p  transcript_id AT5G59380.1  protein_id AT5G59380.1p  transcript_id AT5G59380.1  
At5g59385	chr5:023953942	0.0	W/23953942-23954013	AT5G59385.1  tRNA  gene_syn 67888.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: TCC)  transcript_id AT5G59385.1  
At5g59390	chr5:023954934	0.0	W/23954934-23955303,23955377-23955667,23955774-23955955,23956032-23956115,23956201-23956482,23956562-23956786,23956900-23957151	AT5G59390.1  CDS  gene_syn F2O15.7, F2O15_7  go_process biological_process|GO:0008150||ND  product XH/XS domain-containing protein  note XH/XS domain-containing protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Region of unknown function XS (InterPro:IPR005380), Region of unknown function XH (InterPro:IPR005379); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein (TAIR:AT4G01180.1); Has 46392 Blast hits to 28034 proteins in 1325 species: Archae - 502; Bacteria - 4317; Metazoa - 23441; Fungi - 2406; Plants - 1243; Viruses - 183; Other Eukaryotes - 14300 (source: NCBI BLink).  protein_id AT5G59390.1p  transcript_id AT5G59390.1  protein_id AT5G59390.1p  transcript_id AT5G59390.1  
At5g59395	chr5:023957430	0.0	W/23957430-23957501	AT5G59395.1  tRNA  gene_syn 67888.TRNA-GLY-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: TCC)  transcript_id AT5G59395.1  
At5g59400	chr5:023957756	0.0	W/23957756-23957995,23958173-23958235,23958333-23958419,23958674-23958917,23959001-23959074,23959168-23959266,23959426-23959518	AT5G59400.1  CDS  gene_syn F2O15.8, F2O15_8  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 53 Blast hits to 53 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G59400.1p  transcript_id AT5G59400.1  protein_id AT5G59400.1p  transcript_id AT5G59400.1  
At5g59400	chr5:023957756	0.0	W/23957756-23957995,23958173-23958235,23958333-23958419,23958674-23958917,23959001-23959074,23959168-23959272,23959426-23959518	AT5G59400.2  CDS  gene_syn F2O15.8, F2O15_8  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 53 Blast hits to 53 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G59400.2p  transcript_id AT5G59400.2  protein_id AT5G59400.2p  transcript_id AT5G59400.2  
At5g59410	chr5:023960611	0.0	C/23960611-23960730,23960273-23960376,23959889-23960018,23959761-23959799	AT5G59410.1  CDS  gene_syn F2O15.9, F2O15_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rab5-interacting (InterPro:IPR010742); BEST Arabidopsis thaliana protein match is: Rab5-interacting family protein (TAIR:AT2G29020.1); Has 154 Blast hits to 154 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 108; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT5G59410.1p  transcript_id AT5G59410.1  protein_id AT5G59410.1p  transcript_id AT5G59410.1  
At5g59420	chr5:023961731	0.0	W/23961731-23961828,23962282-23962375,23962471-23962587,23962678-23962750,23962858-23962976,23963079-23963200,23963437-23963613,23963725-23963869,23964022-23964200,23964374-23964623	AT5G59420.1  CDS  gene_syn F2O15.17, F2O15_17, ORP3C, OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3C  gene ORP3C  go_process steroid metabolic process|GO:0008202||IEA  go_component cellular_component|GO:0005575||ND  go_process steroid metabolic process|GO:0008202||ISS  go_function oxysterol binding|GO:0008142||ISS  product ORP3C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3C); oxysterol binding  note OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3C (ORP3C); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Oxysterol-binding protein, conserved site (InterPro:IPR018494), Oxysterol-binding protein (InterPro:IPR000648); BEST Arabidopsis thaliana protein match is: ORP3B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3B); oxysterol binding (TAIR:AT3G09300.1); Has 1796 Blast hits to 1766 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 945; Fungi - 446; Plants - 158; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).  protein_id AT5G59420.1p  transcript_id AT5G59420.1  protein_id AT5G59420.1p  transcript_id AT5G59420.1  
At5g59430	chr5:023968254	0.0	W/23968254-23968337,23968432-23969047,23969138-23969266,23969360-23969407,23969493-23969572,23969645-23969835,23969923-23970243,23970336-23970399,23970492-23970622,23970711-23970753	AT5G59430.3  CDS  gene_syn ATTRP1, F2O15.20, F2O15_20, TELOMERE REPEAT BINDING PROTEIN 1, TELOMERIC REPEAT BINDING PROTEIN 1, TRP1  gene TRP1  function Encodes a telomeric repeat binding protein with a DNA binding domain at its C terminus. The DNA binding domain has a preference for GGTTTAG sequences and at least five of these repeats are required for recognition by a nearly full-length TRP1 protein.  go_component nucleus|GO:0005634||ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function double-stranded telomeric DNA binding|GO:0003691|11278537|IDA  product TRP1 (TELOMERIC REPEAT BINDING PROTEIN 1); DNA binding / double-stranded telomeric DNA binding  note TELOMERE REPEAT BINDING PROTEIN 1 (ATTRP1); FUNCTIONS IN: DNA binding, double-stranded telomeric DNA binding; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Ubiquitin (InterPro:IPR000626), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRFL1 (TRF-LIKE 1); DNA bending/ DNA binding / telomeric DNA binding (TAIR:AT3G46590.2); Has 176 Blast hits to 166 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT5G59430.3p  transcript_id AT5G59430.3  protein_id AT5G59430.3p  transcript_id AT5G59430.3  
At5g59430	chr5:023968254	0.0	W/23968254-23968337,23968432-23969047,23969138-23969266,23969360-23969407,23969493-23969572,23969645-23969835,23969923-23970243,23970336-23970399,23970492-23970695	AT5G59430.1  CDS  gene_syn ATTRP1, F2O15.20, F2O15_20, TELOMERE REPEAT BINDING PROTEIN 1, TELOMERIC REPEAT BINDING PROTEIN 1, TRP1  gene TRP1  function Encodes a telomeric repeat binding protein with a DNA binding domain at its C terminus. The DNA binding domain has a preference for GGTTTAG sequences and at least five of these repeats are required for recognition by a nearly full-length TRP1 protein.  go_component nucleus|GO:0005634||ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function double-stranded telomeric DNA binding|GO:0003691|11278537|IDA  product TRP1 (TELOMERIC REPEAT BINDING PROTEIN 1); DNA binding / double-stranded telomeric DNA binding  note TELOMERIC REPEAT BINDING PROTEIN 1 (TRP1); FUNCTIONS IN: DNA binding, double-stranded telomeric DNA binding; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Ubiquitin (InterPro:IPR000626), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRFL1 (TRF-LIKE 1); DNA bending/ DNA binding / telomeric DNA binding (TAIR:AT3G46590.2); Has 179 Blast hits to 169 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 146; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT5G59430.1p  transcript_id AT5G59430.1  protein_id AT5G59430.1p  transcript_id AT5G59430.1  
At5g59430	chr5:023968254	0.0	W/23968254-23968337,23968432-23969047,23969138-23969266,23969360-23969407,23969493-23969572,23969645-23969835,23969923-23970243,23970336-23970399,23970492-23970695	AT5G59430.2  CDS  gene_syn ATTRP1, F2O15.20, F2O15_20, TELOMERE REPEAT BINDING PROTEIN 1, TELOMERIC REPEAT BINDING PROTEIN 1, TRP1  gene TRP1  function Encodes a telomeric repeat binding protein with a DNA binding domain at its C terminus. The DNA binding domain has a preference for GGTTTAG sequences and at least five of these repeats are required for recognition by a nearly full-length TRP1 protein.  go_component nucleus|GO:0005634||ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function double-stranded telomeric DNA binding|GO:0003691|11278537|IDA  product TRP1 (TELOMERIC REPEAT BINDING PROTEIN 1); DNA binding / double-stranded telomeric DNA binding  note TELOMERE REPEAT BINDING PROTEIN 1 (ATTRP1); FUNCTIONS IN: DNA binding, double-stranded telomeric DNA binding; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Ubiquitin (InterPro:IPR000626), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRFL1 (TRF-LIKE 1); DNA bending/ DNA binding / telomeric DNA binding (TAIR:AT3G46590.2); Has 179 Blast hits to 169 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 146; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT5G59430.2p  transcript_id AT5G59430.2  protein_id AT5G59430.2p  transcript_id AT5G59430.2  
At5g59430	chr5:023968254	0.0	W/23968254-23968337,23968435-23969047,23969138-23969266,23969360-23969407,23969493-23969572,23969645-23969835,23969923-23970243,23970336-23970399,23970492-23970695	AT5G59430.4  CDS  gene_syn ATTRP1, F2O15.20, F2O15_20, TELOMERE REPEAT BINDING PROTEIN 1, TELOMERIC REPEAT BINDING PROTEIN 1, TRP1  gene TRP1  function Encodes a telomeric repeat binding protein with a DNA binding domain at its C terminus. The DNA binding domain has a preference for GGTTTAG sequences and at least five of these repeats are required for recognition by a nearly full-length TRP1 protein.  go_component nucleus|GO:0005634||ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function double-stranded telomeric DNA binding|GO:0003691|11278537|IDA  product TRP1 (TELOMERIC REPEAT BINDING PROTEIN 1); DNA binding / double-stranded telomeric DNA binding  note TELOMERE REPEAT BINDING PROTEIN 1 (ATTRP1); FUNCTIONS IN: DNA binding, double-stranded telomeric DNA binding; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Ubiquitin (InterPro:IPR000626), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRFL1 (TRF-LIKE 1); DNA bending/ DNA binding / telomeric DNA binding (TAIR:AT3G46590.1); Has 179 Blast hits to 169 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 146; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT5G59430.4p  transcript_id AT5G59430.4  protein_id AT5G59430.4p  transcript_id AT5G59430.4  
At5g59440	chr5:023971397	0.0	W/23971397-23971402,23971515-23971569,23971809-23972169,23972246-23972522,23972613-23972729	AT5G59440.3  CDS  gene_syn ARABIDOPSIS THALIANA THYMIDYLATE KINASE.1, ARABIDOPSIS THALIANA THYMIDYLATE KINASE.2, ATTMPK.1, ATTMPK.2, F2O15.12, F2O15_12, ZEU1, ZEUS1  gene ZEU1  function Encodes thymidylate kinase which exists in two isoforms in plants. The longer variant of 263 amino acids with a N-terminal extension that is required for localization to the mitochondrion. The second isoform of 224 residues is localized to the cytoplasm and nucleoplasm. Peak of expression occurs during G1/S phase transition.  go_process dTDP biosynthetic process|GO:0006233||IEA  go_function thymidylate kinase activity|GO:0004798||IEA  go_function ATP binding|GO:0005524||IEA  go_component nucleoplasm|GO:0005654|18036198|IDA  go_component cytoplasm|GO:0005737|18036198|IDA  go_component mitochondrion|GO:0005739|18036198|IDA  go_function thymidylate kinase activity|GO:0004798||ISS  product ZEU1 (ZEUS1); ATP binding / thymidylate kinase  note ZEUS1 (ZEU1); FUNCTIONS IN: thymidylate kinase activity, ATP binding; INVOLVED IN: dTDP biosynthetic process; LOCATED IN: nucleoplasm, mitochondrion, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thymidylate kinase (InterPro:IPR018094), Thymidylate kinase-like (InterPro:IPR000062), Thymidylate kinase, conserved site (InterPro:IPR018095); Has 3427 Blast hits to 3427 proteins in 1280 species: Archae - 144; Bacteria - 2178; Metazoa - 160; Fungi - 104; Plants - 24; Viruses - 132; Other Eukaryotes - 685 (source: NCBI BLink).  protein_id AT5G59440.3p  transcript_id AT5G59440.3  protein_id AT5G59440.3p  transcript_id AT5G59440.3  
At5g59440	chr5:023971533	0.0	W/23971533-23971569,23971809-23972169,23972246-23972522,23972613-23972729	AT5G59440.1  CDS  gene_syn ARABIDOPSIS THALIANA THYMIDYLATE KINASE.1, ARABIDOPSIS THALIANA THYMIDYLATE KINASE.2, ATTMPK.1, ATTMPK.2, F2O15.12, F2O15_12, ZEU1, ZEUS1  gene ZEU1  function Encodes thymidylate kinase which exists in two isoforms in plants. The longer variant of 263 amino acids with a N-terminal extension that is required for localization to the mitochondrion. The second isoform of 224 residues is localized to the cytoplasm and nucleoplasm. Peak of expression occurs during G1/S phase transition.  go_process dTDP biosynthetic process|GO:0006233||IEA  go_process anaerobic respiration|GO:0009061||IEA  go_process pyrimidine deoxyribonucleoside interconversion|GO:0019690||IEA  go_function thymidylate kinase activity|GO:0004798||IEA  go_function ATP binding|GO:0005524||IEA  go_component nucleoplasm|GO:0005654|18036198|IDA  go_component cytoplasm|GO:0005737|18036198|IDA  go_component mitochondrion|GO:0005739|18036198|IDA  go_function thymidylate kinase activity|GO:0004798||ISS  product ZEU1 (ZEUS1); ATP binding / thymidylate kinase  note ZEUS1 (ZEU1); FUNCTIONS IN: thymidylate kinase activity, ATP binding; INVOLVED IN: dTDP biosynthetic process, pyrimidine deoxyribonucleoside interconversion, anaerobic respiration; LOCATED IN: nucleoplasm, mitochondrion, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thymidylate kinase (InterPro:IPR018094), Thymidylate kinase-like (InterPro:IPR000062), Thymidylate kinase, conserved site (InterPro:IPR018095); Has 3425 Blast hits to 3425 proteins in 1279 species: Archae - 144; Bacteria - 2176; Metazoa - 160; Fungi - 104; Plants - 24; Viruses - 132; Other Eukaryotes - 685 (source: NCBI BLink).  protein_id AT5G59440.1p  transcript_id AT5G59440.1  protein_id AT5G59440.1p  transcript_id AT5G59440.1  
At5g59440	chr5:023971889	0.0	W/23971889-23972169,23972246-23972522,23972613-23972729	AT5G59440.2  CDS  gene_syn ARABIDOPSIS THALIANA THYMIDYLATE KINASE.1, ARABIDOPSIS THALIANA THYMIDYLATE KINASE.2, ATTMPK.1, ATTMPK.2, F2O15.12, F2O15_12, ZEU1, ZEUS1  gene ZEU1  function Encodes thymidylate kinase which exists in two isoforms in plants. The longer variant of 263 amino acids with a N-terminal extension that is required for localization to the mitochondrion. The second isoform of 224 residues is localized to the cytoplasm and nucleoplasm. Peak of expression occurs during G1/S phase transition.  go_process dTDP biosynthetic process|GO:0006233||IEA  go_function thymidylate kinase activity|GO:0004798||IEA  go_function ATP binding|GO:0005524||IEA  go_component nucleoplasm|GO:0005654|18036198|IDA  go_component cytoplasm|GO:0005737|18036198|IDA  go_component mitochondrion|GO:0005739|18036198|IDA  go_function thymidylate kinase activity|GO:0004798||ISS  product ZEU1 (ZEUS1); ATP binding / thymidylate kinase  note ZEUS1 (ZEU1); FUNCTIONS IN: thymidylate kinase activity, ATP binding; INVOLVED IN: dTDP biosynthetic process; LOCATED IN: nucleoplasm, mitochondrion, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thymidylate kinase (InterPro:IPR018094), Thymidylate kinase-like (InterPro:IPR000062), Thymidylate kinase, conserved site (InterPro:IPR018095); Has 3425 Blast hits to 3425 proteins in 1279 species: Archae - 144; Bacteria - 2176; Metazoa - 160; Fungi - 104; Plants - 24; Viruses - 132; Other Eukaryotes - 685 (source: NCBI BLink).  protein_id AT5G59440.2p  transcript_id AT5G59440.2  protein_id AT5G59440.2p  transcript_id AT5G59440.2  
At5g59450	chr5:023974808	0.0	W/23974808-23976640	AT5G59450.1  CDS  gene_syn F2O15.5, F2O15_5  go_component cellular_component|GO:0005575||ND  go_process response to chitin|GO:0010200|17722694|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product scarecrow-like transcription factor 11 (SCL11)  note scarecrow-like transcription factor 11 (SCL11); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to chitin, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: scarecrow transcription factor family protein (TAIR:AT3G46600.1); Has 1357 Blast hits to 1319 proteins in 190 species: Archae - 0; Bacteria - 4; Metazoa - 4; Fungi - 0; Plants - 1347; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G59450.1p  transcript_id AT5G59450.1  protein_id AT5G59450.1p  transcript_id AT5G59450.1  
At5g59460	chr5:023978250	0.0	C/23978250-23978291,23977793-23977890,23977575-23977656,23977425-23977498,23976968-23977190	AT5G59460.1  CDS  gene_syn F2O15.14, F2O15_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product scarecrow-like transcription factor 11 (SCL11)  note scarecrow-like transcription factor 11 (SCL11); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 65 Blast hits to 65 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 51; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G59460.1p  transcript_id AT5G59460.1  protein_id AT5G59460.1p  transcript_id AT5G59460.1  
At5g59470	chr5:023978611	0.0	W/23978611-23978757,23978842-23979414	AT5G59470.1  CDS  gene_syn F2O15.15, F2O15_15  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product PQ-loop repeat family protein / transmembrane family protein  note PQ-loop repeat family protein / transmembrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Cystinosin/ERS1p repeat (InterPro:IPR006603), Mannose-P-dolichol utilization defect 1 protein (InterPro:IPR016817); BEST Arabidopsis thaliana protein match is: PQ-loop repeat family protein / transmembrane family protein (TAIR:AT4G07390.1); Has 438 Blast hits to 438 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 205; Fungi - 71; Plants - 109; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT5G59470.1p  transcript_id AT5G59470.1  protein_id AT5G59470.1p  transcript_id AT5G59470.1  
At5g59480	chr5:023981096	0.0	C/23981096-23981156,23980894-23980959,23980701-23980798,23980572-23980609,23980393-23980480,23980021-23980299,23979862-23979927,23979619-23979771	AT5G59480.1  CDS  gene_syn F2O15.10, F2O15_10  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity|GO:0016787||ISS  product haloacid dehalogenase-like hydrolase family protein  note haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Pyrimidine 5-nucleotidase (InterPro:IPR010237), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: haloacid dehalogenase-like hydrolase family protein (TAIR:AT5G02230.2); Has 1804 Blast hits to 1804 proteins in 295 species: Archae - 3; Bacteria - 406; Metazoa - 0; Fungi - 93; Plants - 108; Viruses - 0; Other Eukaryotes - 1194 (source: NCBI BLink).  protein_id AT5G59480.1p  transcript_id AT5G59480.1  protein_id AT5G59480.1p  transcript_id AT5G59480.1  
At5g59480	chr5:023981096	0.0	C/23981096-23981156,23980894-23980959,23980701-23980798,23980572-23980609,23980396-23980480,23980021-23980299,23979862-23979927,23979619-23979771	AT5G59480.2  CDS  gene_syn F2O15.10, F2O15_10  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity|GO:0016787||ISS  product haloacid dehalogenase-like hydrolase family protein  note haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Pyrimidine 5-nucleotidase (InterPro:IPR010237), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: haloacid dehalogenase-like hydrolase family protein (TAIR:AT5G02230.2); Has 1768 Blast hits to 1768 proteins in 294 species: Archae - 4; Bacteria - 404; Metazoa - 0; Fungi - 93; Plants - 108; Viruses - 0; Other Eukaryotes - 1159 (source: NCBI BLink).  protein_id AT5G59480.2p  transcript_id AT5G59480.2  protein_id AT5G59480.2p  transcript_id AT5G59480.2  
At5g59490	chr5:023984371	0.0	C/23984371-23984419,23984194-23984259,23984002-23984099,23983743-23983868,23983436-23983663,23983266-23983331,23982922-23983089	AT5G59490.1  CDS  gene_syn F2O15.11, F2O15_11  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity|GO:0016787||ISS  product haloacid dehalogenase-like hydrolase family protein  note haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Pyrimidine 5-nucleotidase (InterPro:IPR010237), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: haloacid dehalogenase-like hydrolase family protein (TAIR:AT5G02230.2); Has 1759 Blast hits to 1758 proteins in 297 species: Archae - 17; Bacteria - 410; Metazoa - 0; Fungi - 91; Plants - 109; Viruses - 0; Other Eukaryotes - 1132 (source: NCBI BLink).  protein_id AT5G59490.1p  transcript_id AT5G59490.1  protein_id AT5G59490.1p  transcript_id AT5G59490.1  
At5g59500	chr5:023986024	0.0	W/23986024-23987214	AT5G59500.1  CDS  gene_syn F2O15.18, F2O15_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 491 Blast hits to 491 proteins in 204 species: Archae - 22; Bacteria - 353; Metazoa - 4; Fungi - 21; Plants - 20; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT5G59500.1p  transcript_id AT5G59500.1  protein_id AT5G59500.1p  transcript_id AT5G59500.1  
At5g59505	chr5:023988472	0.0	W/23988472-23988596	AT5G59505.1  miRNA  gene_syn MICRORNA172E, MIR172E  gene MIR172E  function Encodes a microRNA that targets several genes containing AP2 domains including AP2. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: GAAUCUUGAUGAUGCUGCAU  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR172E (MICRORNA172E); miRNA  transcript_id AT5G59505.1  
At5g59510	chr5:023990089	0.0	W/23990089-23990523	AT5G59510.1  CDS  gene_syn DEVIL 18, DVL18, F2O15.21, F2O15_21, ROTUNDIFOLIA LIKE 5, RTFL5  gene RTFL5  go_component cellular_component|GO:0005575||ND  go_process shoot development|GO:0048367|14871303|ISS  go_function molecular_function|GO:0003674||ND  product RTFL5 (ROTUNDIFOLIA LIKE 5)  note ROTUNDIFOLIA LIKE 5 (RTFL5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: shoot development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); BEST Arabidopsis thaliana protein match is: RTFL4 (ROTUNDIFOLIA LIKE 4) (TAIR:AT3G46613.1); Has 133 Blast hits to 122 proteins in 30 species: Archae - 0; Bacteria - 6; Metazoa - 27; Fungi - 24; Plants - 65; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT5G59510.1p  transcript_id AT5G59510.1  protein_id AT5G59510.1p  transcript_id AT5G59510.1  
At5g59520	chr5:023992093	0.0	C/23992093-23992762,23991447-23991838	AT5G59520.1  CDS  gene_syn F2O15.25, F2O15_25, ZIP2  gene ZIP2  function encodes a metal ion transporter whose expression is regulated by copper.  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process zinc ion transport|GO:0006829|11500563|TAS  go_process zinc ion transport|GO:0006829||ISS  go_process response to copper ion|GO:0046688|13129917|IEP  go_function copper ion transmembrane transporter activity|GO:0005375|13129917|IGI  go_function zinc ion transmembrane transporter activity|GO:0005385|11500563|TAS  go_function zinc ion transmembrane transporter activity|GO:0005385||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product ZIP2; copper ion transmembrane transporter/ transferase, transferring glycosyl groups / zinc ion transmembrane transporter  note ZIP2; FUNCTIONS IN: zinc ion transmembrane transporter activity, copper ion transmembrane transporter activity, transferase activity, transferring glycosyl groups; INVOLVED IN: zinc ion transport, response to copper ion; LOCATED IN: plasma membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: ZIP11 (ZINC TRANSPORTER 11 PRECURSOR); cation transmembrane transporter/ metal ion transmembrane transporter (TAIR:AT1G55910.1); Has 1132 Blast hits to 1119 proteins in 237 species: Archae - 0; Bacteria - 129; Metazoa - 357; Fungi - 222; Plants - 256; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).  protein_id AT5G59520.1p  transcript_id AT5G59520.1  protein_id AT5G59520.1p  transcript_id AT5G59520.1  
At5g59530	chr5:023995195	0.0	C/23995195-23995715,23994776-23995097,23994434-23994685	AT5G59530.1  CDS  gene_syn F2O15.26, F2O15_26  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product 2-oxoglutarate-dependent dioxygenase, putative  note 2-oxoglutarate-dependent dioxygenase, putative; FUNCTIONS IN: transferase activity, transferring glycosyl groups; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT5G59540.1); Has 5737 Blast hits to 5713 proteins in 689 species: Archae - 0; Bacteria - 721; Metazoa - 124; Fungi - 557; Plants - 3075; Viruses - 0; Other Eukaryotes - 1260 (source: NCBI BLink).  protein_id AT5G59530.1p  transcript_id AT5G59530.1  protein_id AT5G59530.1p  transcript_id AT5G59530.1  
At5g59540	chr5:023997050	0.0	C/23997050-23997576,23996615-23996945	AT5G59540.2  CDS  gene_syn F2O15.6, F2O15_6  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function oxidoreductase activity|GO:0016491||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase, putative (TAIR:AT5G59530.1); Has 4867 Blast hits to 4851 proteins in 654 species: Archae - 0; Bacteria - 654; Metazoa - 74; Fungi - 421; Plants - 2940; Viruses - 0; Other Eukaryotes - 778 (source: NCBI BLink).  protein_id AT5G59540.2p  transcript_id AT5G59540.2  protein_id AT5G59540.2p  transcript_id AT5G59540.2  
At5g59540	chr5:023997050	0.0	C/23997050-23997576,23996624-23996945,23996293-23996544	AT5G59540.1  CDS  gene_syn F2O15.6, F2O15_6  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function oxidoreductase activity|GO:0016491||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase, putative (TAIR:AT5G59530.1); Has 5683 Blast hits to 5661 proteins in 686 species: Archae - 0; Bacteria - 714; Metazoa - 123; Fungi - 539; Plants - 3068; Viruses - 0; Other Eukaryotes - 1239 (source: NCBI BLink).  protein_id AT5G59540.1p  transcript_id AT5G59540.1  protein_id AT5G59540.1p  transcript_id AT5G59540.1  
At5g59550	chr5:023998422	0.0	C/23998422-23999645	AT5G59550.1  CDS  gene_syn F2O15.22, F2O15_22  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process response to chitin|GO:0010200|17722694|IEP  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Protein of unknown function DUF1117 (InterPro:IPR010543); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G46620.1); Has 6207 Blast hits to 6188 proteins in 212 species: Archae - 0; Bacteria - 6; Metazoa - 2070; Fungi - 537; Plants - 2564; Viruses - 41; Other Eukaryotes - 989 (source: NCBI BLink).  protein_id AT5G59550.1p  transcript_id AT5G59550.1  protein_id AT5G59550.1p  transcript_id AT5G59550.1  
At5g59560	chr5:024000747	0.0	C/24000747-24001574	AT5G59560.1  CDS  gene_syn F2O15.23, F2O15_23, SENSITIVITY TO RED LIGHT REDUCED 1, SRR1  gene SRR1  function Encodes a novel protein conserved in higher eukaryotes. Normal function of the protein is required for normal oscillator function during circadian rhythm. Mutant analyses also suggest a role in phytochrome B (phyB)-mediated light signaling.  go_component nucleus|GO:0005634|12533513|IDA  go_component nucleus|GO:0005634|12533513|TAS  go_component cytoplasm|GO:0005737|12533513|IDA  go_process red, far-red light phototransduction|GO:0009585|12533513|IMP  go_process regulation of circadian rhythm|GO:0042752|12533513|IMP  go_function molecular_function|GO:0003674||ND  product SRR1 (SENSITIVITY TO RED LIGHT REDUCED 1)  note SENSITIVITY TO RED LIGHT REDUCED 1 (SRR1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of circadian rhythm, red, far-red light phototransduction; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SRR1 (InterPro:IPR012942); Has 135 Blast hits to 132 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 67; Fungi - 11; Plants - 38; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT5G59560.1p  transcript_id AT5G59560.1  protein_id AT5G59560.1p  transcript_id AT5G59560.1  
At5g59560	chr5:024000747	0.0	C/24000747-24001574	AT5G59560.2  CDS  gene_syn F2O15.23, F2O15_23, SENSITIVITY TO RED LIGHT REDUCED 1, SRR1  gene SRR1  function Encodes a novel protein conserved in higher eukaryotes. Normal function of the protein is required for normal oscillator function during circadian rhythm. Mutant analyses also suggest a role in phytochrome B (phyB)-mediated light signaling.  go_component nucleus|GO:0005634|12533513|IDA  go_component nucleus|GO:0005634|12533513|TAS  go_component cytoplasm|GO:0005737|12533513|IDA  go_process red, far-red light phototransduction|GO:0009585|12533513|IMP  go_process regulation of circadian rhythm|GO:0042752|12533513|IMP  go_function molecular_function|GO:0003674||ND  product SRR1 (SENSITIVITY TO RED LIGHT REDUCED 1)  note SENSITIVITY TO RED LIGHT REDUCED 1 (SRR1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of circadian rhythm, red, far-red light phototransduction; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SRR1 (InterPro:IPR012942); Has 135 Blast hits to 132 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 67; Fungi - 11; Plants - 38; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT5G59560.2p  transcript_id AT5G59560.2  protein_id AT5G59560.2p  transcript_id AT5G59560.2  
At5g59570	chr5:024004047	0.0	W/24004047-24004943	AT5G59570.1  CDS  gene_syn F2O15.24, F2O15_24  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: PCL1 (PHYTOCLOCK 1); DNA binding / transcription factor (TAIR:AT3G46640.2); Has 892 Blast hits to 892 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 875; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT5G59570.1p  transcript_id AT5G59570.1  protein_id AT5G59570.1p  transcript_id AT5G59570.1  
At5g59580	chr5:024007212	0.0	C/24007212-24007689,24006239-24007122	AT5G59580.1  CDS  gene_syn F2O15.16, F2O15_16, UDP-GLUCOSYL TRANSFERASE 76E1, UGT76E1  gene UGT76E1  go_process metabolic process|GO:0008152||IEA  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function quercetin 3-O-glucosyltransferase activity|GO:0080043|15352060|IDA  go_function quercetin 7-O-glucosyltransferase activity|GO:0080044|15352060|IDA  product UGT76E1 (UDP-GLUCOSYL TRANSFERASE 76E1); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ quercetin 7-O-glucosyltransferase  note UDP-GLUCOSYL TRANSFERASE 76E1 (UGT76E1); FUNCTIONS IN: quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT76E2 (UDP-GLUCOSYL TRANSFERASE 76E2); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ quercetin 7-O-glucosyltransferase (TAIR:AT5G59590.1); Has 4815 Blast hits to 4788 proteins in 323 species: Archae - 0; Bacteria - 153; Metazoa - 1833; Fungi - 14; Plants - 2700; Viruses - 90; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT5G59580.1p  transcript_id AT5G59580.1  protein_id AT5G59580.1p  transcript_id AT5G59580.1  
At5g59590	chr5:024010102	0.0	C/24010102-24010585,24009152-24010017	AT5G59590.1  CDS  gene_syn F2O15.19, F2O15_19, UDP-GLUCOSYL TRANSFERASE 76E2, UGT76E2  gene UGT76E2  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function quercetin 3-O-glucosyltransferase activity|GO:0080043|15352060|IDA  go_function quercetin 7-O-glucosyltransferase activity|GO:0080044|15352060|IDA  product UGT76E2 (UDP-GLUCOSYL TRANSFERASE 76E2); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ quercetin 7-O-glucosyltransferase  note UDP-GLUCOSYL TRANSFERASE 76E2 (UGT76E2); FUNCTIONS IN: quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT76E1 (UDP-GLUCOSYL TRANSFERASE 76E1); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ quercetin 7-O-glucosyltransferase (TAIR:AT5G59580.1); Has 4913 Blast hits to 4888 proteins in 333 species: Archae - 0; Bacteria - 148; Metazoa - 1910; Fungi - 21; Plants - 2692; Viruses - 112; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT5G59590.1p  transcript_id AT5G59590.1  protein_id AT5G59590.1p  transcript_id AT5G59590.1  
At5g59600	chr5:024011315	0.0	C/24011315-24012919	AT5G59600.1  CDS  gene_syn F2O15.13, F2O15_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: EMB2758 (embryo defective 2758) (TAIR:AT4G33990.1); Has 16346 Blast hits to 5424 proteins in 162 species: Archae - 0; Bacteria - 5; Metazoa - 170; Fungi - 149; Plants - 15583; Viruses - 0; Other Eukaryotes - 439 (source: NCBI BLink).  protein_id AT5G59600.1p  transcript_id AT5G59600.1  protein_id AT5G59600.1p  transcript_id AT5G59600.1  
At5g59610	chr5:024013165	0.0	W/24013165-24013485,24013771-24013936,24014318-24014346,24014484-24014578,24014730-24014889	AT5G59610.2  CDS  gene_syn MTH12.18, MTH12_18  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT4G39960.1).  protein_id AT5G59610.2p  transcript_id AT5G59610.2  protein_id AT5G59610.2p  transcript_id AT5G59610.2  
At5g59610	chr5:024013165	0.0	W/24013165-24013485,24013771-24013936,24014484-24014578,24014730-24014954	AT5G59610.1  CDS  gene_syn MTH12.18, MTH12_18  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT4G39960.1); Has 16478 Blast hits to 16475 proteins in 1921 species: Archae - 123; Bacteria - 5355; Metazoa - 3420; Fungi - 1454; Plants - 1202; Viruses - 14; Other Eukaryotes - 4910 (source: NCBI BLink).  protein_id AT5G59610.1p  transcript_id AT5G59610.1  protein_id AT5G59610.1p  transcript_id AT5G59610.1  
At5g59613	chr5:024016380	0.0	C/24016380-24016500,24016162-24016208	AT5G59613.1  CDS  go_component mitochondrial respiratory chain complex III|GO:0005750|18189341|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrial respiratory chain complex III; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46430.1); Has 26 Blast hits to 26 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G59613.1p  transcript_id AT5G59613.1  protein_id AT5G59613.1p  transcript_id AT5G59613.1  
At5g59616	chr5:024017511	0.0	W/24017511-24017823,24017929-24018077	AT5G59616.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product protein kinase-related  note protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT5G59680.1); Has 363 Blast hits to 363 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 363; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G59616.1p  transcript_id AT5G59616.1  protein_id AT5G59616.1p  transcript_id AT5G59616.1  
At5g59620	chr5:024018936	0.0	C/24018936-24020605	AT5G59620.1  mRNA_TE_gene  pseudo  gene_syn MTH12.16, MTH12_16  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 4.1e-125 P-value blast match to At5g59620.1/14-257 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At5g59630	chr5:024021433	0.0	C/24021433-24023925	AT5G59630.1  pseudogenic_transcript  pseudo  gene_syn MTH12.4, MTH12_4  note pseudogene, glycine-rich protein, blastp match of 53% identity and 5.4e-10 P-value to GP|9837280|gb|AAG00510.1||AF285172 leaf senescence-associated receptor-like protein kinase {Phaseolus vulgaris}  
At5g59640	chr5:024025992	0.0	W/24025992-24030772	AT5G59640.1  mRNA_TE_gene  pseudo  gene_syn MTH12.5, MTH12_5  note Transposable element gene, CACTA-like transposase family (En/Spm), has a 5.1e-159 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays)  
At5g59650	chr5:024031346	0.0	W/24031346-24031427,24031538-24032075,24032184-24032639,24032722-24032916,24033003-24033074,24033159-24033230,24033317-24033385,24033481-24033647,24033739-24033980,24034052-24034178,24034258-24034323,24034407-24034596,24034698-24035100	AT5G59650.1  CDS  gene_syn MTH12.9, MTH12_9  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat protein kinase, putative  note leucine-rich repeat protein kinase, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT5G59680.1); Has 105702 Blast hits to 87450 proteins in 3132 species: Archae - 46; Bacteria - 7568; Metazoa - 37804; Fungi - 6697; Plants - 38354; Viruses - 328; Other Eukaryotes - 14905 (source: NCBI BLink).  protein_id AT5G59650.1p  transcript_id AT5G59650.1  protein_id AT5G59650.1p  transcript_id AT5G59650.1  
At5g59660	chr5:024035687	0.0	W/24035687-24035804,24035912-24036062,24036148-24036251,24036314-24036437,24036602-24036798,24036906-24037100,24037206-24037350,24037454-24037525,24037608-24037679,24037758-24037817,24037916-24038079,24038206-24038435,24038619-24038670,24038754-24038819,24038913-24039102,24039181-24039570,24039781-24039979	AT5G59660.1  CDS  gene_syn MTH12.10, MTH12_10  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat protein kinase, putative  note leucine-rich repeat protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT5G59670.1); Has 89295 Blast hits to 73815 proteins in 2135 species: Archae - 24; Bacteria - 6057; Metazoa - 31037; Fungi - 5434; Plants - 34390; Viruses - 281; Other Eukaryotes - 12072 (source: NCBI BLink).  protein_id AT5G59660.1p  transcript_id AT5G59660.1  protein_id AT5G59660.1p  transcript_id AT5G59660.1  
At5g59662	chr5:024039142	0.0	C/24039142-24040411	AT5G59662.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT5G59660  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G59662.1  
At5g59670	chr5:024041538	0.0	W/24041538-24041616,24041710-24042247,24042537-24043018,24043105-24043249,24043338-24043409,24043512-24043583,24043649-24043717,24043816-24043952,24044085-24044314,24044410-24044536,24044623-24044688,24044784-24044973,24045079-24045478	AT5G59670.1  CDS  gene_syn MTH12.12, MTH12_12  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat protein kinase, putative  note leucine-rich repeat protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT5G59680.1); Has 115480 Blast hits to 88728 proteins in 3219 species: Archae - 48; Bacteria - 7822; Metazoa - 38705; Fungi - 6831; Plants - 46286; Viruses - 363; Other Eukaryotes - 15425 (source: NCBI BLink).  protein_id AT5G59670.1p  transcript_id AT5G59670.1  protein_id AT5G59670.1p  transcript_id AT5G59670.1  
At5g59680	chr5:024046792	0.0	W/24046792-24046873,24046985-24047525,24047811-24048286,24048427-24048571,24048659-24048730,24048824-24048895,24048994-24049062,24049161-24049324,24049412-24049662,24049754-24049880,24049969-24050034,24050121-24050310,24050408-24050801	AT5G59680.1  CDS  gene_syn MTH12.14, MTH12_14  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat protein kinase, putative  note leucine-rich repeat protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT5G59650.1); Has 108646 Blast hits to 83167 proteins in 3104 species: Archae - 36; Bacteria - 7107; Metazoa - 36142; Fungi - 6245; Plants - 44738; Viruses - 329; Other Eukaryotes - 14049 (source: NCBI BLink).  protein_id AT5G59680.1p  transcript_id AT5G59680.1  protein_id AT5G59680.1p  transcript_id AT5G59680.1  
At5g59690	chr5:024051649	0.0	W/24051649-24051960	AT5G59690.1  CDS  gene_syn MTH12.15  go_component thylakoid|GO:0009579|16648217|IDA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product histone H4  note histone H4; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: thylakoid; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072), Histone H4 (InterPro:IPR001951), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H4 (TAIR:AT5G59970.1); Has 2716 Blast hits to 2716 proteins in 361 species: Archae - 0; Bacteria - 0; Metazoa - 1566; Fungi - 282; Plants - 355; Viruses - 6; Other Eukaryotes - 507 (source: NCBI BLink).  protein_id AT5G59690.1p  transcript_id AT5G59690.1  protein_id AT5G59690.1p  transcript_id AT5G59690.1  
At5g59700	chr5:024052613	0.0	C/24052613-24055102	AT5G59700.1  CDS  gene_syn MTH12.1, MTH12_1  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT3G46290.1); Has 84569 Blast hits to 83551 proteins in 3353 species: Archae - 44; Bacteria - 7439; Metazoa - 37612; Fungi - 6538; Plants - 18618; Viruses - 373; Other Eukaryotes - 13945 (source: NCBI BLink).  protein_id AT5G59700.1p  transcript_id AT5G59700.1  protein_id AT5G59700.1p  transcript_id AT5G59700.1  
At5g59710	chr5:024058157	0.0	W/24058157-24058171,24058280-24058388,24058471-24058649,24058731-24059103,24059547-24059741,24059858-24059956,24060245-24060333,24060436-24060516,24060668-24061078,24061167-24061219,24061317-24061358,24061448-24061586,24061677-24061736	AT5G59710.1  CDS  gene_syn AtVIP2, MTH12.8, MTH12_8, VIP2, VIRE2 INTERACTING PROTEIN2  gene VIP2  function Encodes a nuclear-localized NOT (negative on TATA-less) domain-containing protein that interacts with the Agrobacterium VirE2 protein and is required for Agrobacterium-mediated plant transformation. It likely facilitates T-DNA integration into plant chromosomes and may play a role as a transcriptional regulator.  go_component nucleus|GO:0005634|17496122|IDA  go_process DNA integration|GO:0015074|17496122|IMP  go_process negative regulation of transcription|GO:0016481||ISS  go_function protein binding|GO:0005515|17496122|IPI  go_function transcription regulator activity|GO:0030528||ISS  product VIP2 (VIRE2 INTERACTING PROTEIN2); protein binding / transcription regulator  note VIRE2 INTERACTING PROTEIN2 (VIP2); FUNCTIONS IN: protein binding, transcription regulator activity; INVOLVED IN: DNA integration, negative regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NOT2/NOT3/NOT5 (InterPro:IPR007282); BEST Arabidopsis thaliana protein match is: transcription regulator (TAIR:AT1G07705.2); Has 3142 Blast hits to 2405 proteins in 339 species: Archae - 0; Bacteria - 949; Metazoa - 901; Fungi - 428; Plants - 131; Viruses - 9; Other Eukaryotes - 724 (source: NCBI BLink).  protein_id AT5G59710.1p  transcript_id AT5G59710.1  protein_id AT5G59710.1p  transcript_id AT5G59710.1  
At5g59720	chr5:024062632	0.0	W/24062632-24063117	AT5G59720.1  CDS  gene_syn HSP18.2, MTH12.7, MTH12_7, heat shock protein 18.2  gene HSP18.2  function encodes a low molecular weight heat shock protein that contains the heat shock element in the promoter region. Expression is induced in response to heat shock.  go_component cellular_component|GO:0005575||ND  go_process response to heat|GO:0009408|17059409|IEP  go_process response to heat|GO:0009408||IEP  go_process response to high light intensity|GO:0009644|17059409|IEP  go_process heat acclimation|GO:0010286|16807682|IEP  go_process response to hydrogen peroxide|GO:0042542|17059409|IEP  product HSP18.2 (heat shock protein 18.2)  note heat shock protein 18.2 (HSP18.2); INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat, heat acclimation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) (TAIR:AT1G53540.1); Has 4322 Blast hits to 4322 proteins in 962 species: Archae - 106; Bacteria - 2415; Metazoa - 84; Fungi - 221; Plants - 989; Viruses - 0; Other Eukaryotes - 507 (source: NCBI BLink).  protein_id AT5G59720.1p  transcript_id AT5G59720.1  protein_id AT5G59720.1p  transcript_id AT5G59720.1  
At5g59730	chr5:024064100	0.0	C/24064100-24066004	AT5G59730.1  CDS  gene_syn ATEXO70H7, EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H7, MTH12.6, MTH12_6  gene ATEXO70H7  function A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.  go_component exocyst|GO:0000145||IEA  go_process exocytosis|GO:0006887||IEA  go_component exocyst|GO:0000145||ISS  go_process vesicle docking during exocytosis|GO:0006904||ISS  go_function protein binding|GO:0005515||ISS  product ATEXO70H7 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H7); protein binding  note EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H7 (ATEXO70H7); FUNCTIONS IN: protein binding; INVOLVED IN: exocytosis, vesicle docking during exocytosis; LOCATED IN: exocyst; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: ATEXO70H6 (exocyst subunit EXO70 family protein H6); protein binding (TAIR:AT1G07725.1); Has 486 Blast hits to 479 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 7; Plants - 366; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G59730.1p  transcript_id AT5G59730.1  protein_id AT5G59730.1p  transcript_id AT5G59730.1  
At5g59730	chr5:024064147	0.0	C/24064147-24066004,24064096-24064136	AT5G59730.2  CDS  gene_syn ATEXO70H7, EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H7, MTH12.6, MTH12_6  gene ATEXO70H7  function A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.  go_component exocyst|GO:0000145||IEA  go_process exocytosis|GO:0006887||IEA  go_component exocyst|GO:0000145||ISS  go_process vesicle docking during exocytosis|GO:0006904||ISS  go_function protein binding|GO:0005515||ISS  product ATEXO70H7 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H7); protein binding  note EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H7 (ATEXO70H7); FUNCTIONS IN: protein binding; INVOLVED IN: exocytosis, vesicle docking during exocytosis; LOCATED IN: exocyst; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: ATEXO70H6 (exocyst subunit EXO70 family protein H6); protein binding (TAIR:AT1G07725.1); Has 483 Blast hits to 476 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 5; Plants - 366; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G59730.2p  transcript_id AT5G59730.2  protein_id AT5G59730.2p  transcript_id AT5G59730.2  
At5g59732	chr5:024064478	0.0	W/24064478-24066154	AT5G59732.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT5G59730  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G59732.1  
At5g59740	chr5:024072637	0.0	C/24072637-24072747,24072436-24072549,24072253-24072345,24072105-24072170,24071932-24072030,24071758-24071837,24071530-24071642,24070978-24071066,24070670-24070756,24070506-24070574,24070310-24070423	AT5G59740.1  CDS  gene_syn MTH12.11, MTH12_11  go_function galactose transmembrane transporter activity|GO:0005354||ISS  product UDP-galactose/UDP-glucose transporter-related  note UDP-galactose/UDP-glucose transporter-related; FUNCTIONS IN: galactose transmembrane transporter activity; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UAA transporter (InterPro:IPR013657); BEST Arabidopsis thaliana protein match is: UTR5 (UDP-GALACTOSE TRANSPORTER 5); galactose transmembrane transporter (TAIR:AT3G46180.1); Has 824 Blast hits to 824 proteins in 168 species: Archae - 0; Bacteria - 2; Metazoa - 482; Fungi - 126; Plants - 109; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT5G59740.1p  transcript_id AT5G59740.1  protein_id AT5G59740.1p  transcript_id AT5G59740.1  
At5g59750	chr5:024073397	0.0	W/24073397-24073741,24073844-24074065,24074136-24074461,24074544-24074673,24074797-24075093,24075202-24075411	AT5G59750.1  CDS  gene_syn MTH12.13, MTH12_13  go_component chloroplast|GO:0009507|18431481|IDA  go_process riboflavin biosynthetic process|GO:0009231||IEA  go_function GTP cyclohydrolase II activity|GO:0003935||IEA  go_function 3,4-dihydroxy-2-butanone-4-phosphate synthase activity|GO:0008686||IEA  go_process riboflavin biosynthetic process|GO:0009231||ISS  go_function GTP cyclohydrolase II activity|GO:0003935||ISS  go_function 3,4-dihydroxy-2-butanone-4-phosphate synthase activity|GO:0008686||ISS  product riboflavin biosynthesis protein, putative  note riboflavin biosynthesis protein, putative; FUNCTIONS IN: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, GTP cyclohydrolase II activity; INVOLVED IN: riboflavin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP cyclohydrolase II (InterPro:IPR000926), DHBP synthase RibB (InterPro:IPR000422), DHBP synthase RibB-like alpha/beta domain (InterPro:IPR017945); BEST Arabidopsis thaliana protein match is: ATGCH; 3,4-dihydroxy-2-butanone-4-phosphate synthase/ GTP cyclohydrolase II (TAIR:AT5G64300.1); Has 8351 Blast hits to 8350 proteins in 1311 species: Archae - 133; Bacteria - 4029; Metazoa - 0; Fungi - 273; Plants - 55; Viruses - 0; Other Eukaryotes - 3861 (source: NCBI BLink).  protein_id AT5G59750.1p  transcript_id AT5G59750.1  protein_id AT5G59750.1p  transcript_id AT5G59750.1  
At5g59760	chr5:024076377	0.0	C/24076377-24076415,24075628-24076287	AT5G59760.1  CDS  gene_syn MTH12.3, MTH12_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1635 (InterPro:IPR012862); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28690.1); Has 42 Blast hits to 42 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G59760.1p  transcript_id AT5G59760.1  protein_id AT5G59760.1p  transcript_id AT5G59760.1  
At5g59770	chr5:024081016	0.0	C/24081016-24081195,24080837-24080954,24080706-24080753,24080519-24080607,24080374-24080427,24080111-24080178,24079963-24080009,24079797-24079894,24079521-24079637	AT5G59770.1  CDS  gene_syn MTH12.2, MTH12_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase-like, PTPLA (InterPro:IPR007482); BEST Arabidopsis thaliana protein match is: PAS2 (PASTICCINO 2); enoyl-CoA hydratase/ protein tyrosine phosphatase (TAIR:AT5G10480.2); Has 525 Blast hits to 525 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 286; Fungi - 120; Plants - 70; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT5G59770.1p  transcript_id AT5G59770.1  protein_id AT5G59770.1p  transcript_id AT5G59770.1  
At5g59780	chr5:024082989	0.0	C/24082989-24083044,24082425-24082881	AT5G59780.1  CDS  gene_syn ATMYB59, ATMYB59-1, ATMYB59-2, ATMYB59-3, MTH12.19, MTH12_19, MYB DOMAIN PROTEIN 59, MYB59  gene MYB59  function Encodes a putative transcription factor (MYB59).  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_component nucleus|GO:0005634|16531467|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to chitin|GO:0010200|17722694|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB59 (MYB DOMAIN PROTEIN 59); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 59 (MYB59); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 9 processes; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB111 (MYB DOMAIN PROTEIN 111); DNA binding / transcription factor (TAIR:AT3G46130.3); Has 3832 Blast hits to 3831 proteins in 256 species: Archae - 0; Bacteria - 0; Metazoa - 266; Fungi - 56; Plants - 3054; Viruses - 3; Other Eukaryotes - 453 (source: NCBI BLink).  protein_id AT5G59780.1p  transcript_id AT5G59780.1  protein_id AT5G59780.1p  transcript_id AT5G59780.1  
At5g59780	chr5:024083198	0.0	C/24083198-24083255,24082989-24083118,24082425-24082881	AT5G59780.2  CDS  gene_syn ATMYB59, ATMYB59-1, ATMYB59-2, ATMYB59-3, MTH12.19, MTH12_19, MYB DOMAIN PROTEIN 59, MYB59  gene MYB59  function Encodes a putative transcription factor (MYB59).  go_component nucleus|GO:0005634|16531467|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to chitin|GO:0010200|17722694|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB59 (MYB DOMAIN PROTEIN 59); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 59 (MYB59); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 9 processes; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: MYB111 (MYB DOMAIN PROTEIN 111); DNA binding / transcription factor (TAIR:AT3G46130.3); Has 5637 Blast hits to 5319 proteins in 309 species: Archae - 0; Bacteria - 0; Metazoa - 460; Fungi - 149; Plants - 3665; Viruses - 3; Other Eukaryotes - 1360 (source: NCBI BLink).  protein_id AT5G59780.2p  transcript_id AT5G59780.2  protein_id AT5G59780.2p  transcript_id AT5G59780.2  
At5g59780	chr5:024083230	0.0	C/24083230-24083350,24082989-24083118,24082425-24082881	AT5G59780.3  CDS  gene_syn ATMYB59, ATMYB59-1, ATMYB59-2, ATMYB59-3, MTH12.19, MTH12_19, MYB DOMAIN PROTEIN 59, MYB59  gene MYB59  function Encodes a putative transcription factor (MYB59).  go_component nucleus|GO:0005634|16531467|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to chitin|GO:0010200|17722694|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB59 (MYB DOMAIN PROTEIN 59); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 59 (MYB59); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 9 processes; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB111 (MYB DOMAIN PROTEIN 111); DNA binding / transcription factor (TAIR:AT3G46130.1); Has 6407 Blast hits to 5825 proteins in 351 species: Archae - 0; Bacteria - 0; Metazoa - 708; Fungi - 306; Plants - 3780; Viruses - 6; Other Eukaryotes - 1607 (source: NCBI BLink).  protein_id AT5G59780.3p  transcript_id AT5G59780.3  protein_id AT5G59780.3p  transcript_id AT5G59780.3  
At5g59790	chr5:024090950	0.0	W/24090950-24091184,24091422-24091491,24091571-24092422,24092690-24092804	AT5G59790.1  CDS  gene_syn MMN10.1, MMN10_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF966 (InterPro:IPR010369); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46110.1); Has 96 Blast hits to 95 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 90; Viruses - 3; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G59790.1p  transcript_id AT5G59790.1  protein_id AT5G59790.1p  transcript_id AT5G59790.1  
At5g59800	chr5:024096270	0.0	C/24096270-24096422,24095837-24095989,24095653-24095751,24095272-24095469,24095060-24095182,24094752-24094946	AT5G59800.1  CDS  gene_syn ARABIDOPSIS THALIANA METHYL-CPG-BINDING DOMAIN 7, ATMBD7, MBD7, METHYL-CPG-BINDING DOMAIN 7, MMN10.2, MMN10_2  gene MBD7  function Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins. Interacts with arginine methyltransferase 11. (AtPRMT11  go_component nucleus|GO:0005634|17711414|IDA  go_component chromocenter|GO:0010369|15805479|IDA  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  go_function methyl-CpG binding|GO:0008327|12787239|IDA  go_function methyl-CpG binding|GO:0008327|12787239|ISS  go_function DNA demethylase activity|GO:0051747|12787239|IDA  product MBD7 (METHYL-CPG-BINDING DOMAIN 7); DNA binding / DNA demethylase/ methyl-CpG binding  note METHYL-CPG-BINDING DOMAIN 7 (MBD7); FUNCTIONS IN: DNA demethylase activity, methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, chromocenter; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); Has 24 Blast hits to 20 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G59800.1p  transcript_id AT5G59800.1  protein_id AT5G59800.1p  transcript_id AT5G59800.1  
At5g59810	chr5:024100268	0.0	C/24100268-24100387,24100066-24100175,24099331-24099428,24099077-24099241,24098896-24098992,24098273-24098810,24098087-24098181,24096895-24098008	AT5G59810.1  CDS  gene_syn ATSBT5.4, MMN10.6, MMN10_6, SBT5.4  gene SBT5.4  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product SBT5.4; identical protein binding / serine-type endopeptidase  note SBT5.4; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: AIR3; serine-type endopeptidase (TAIR:AT2G04160.1); Has 3746 Blast hits to 3395 proteins in 608 species: Archae - 118; Bacteria - 2110; Metazoa - 79; Fungi - 147; Plants - 899; Viruses - 0; Other Eukaryotes - 393 (source: NCBI BLink).  protein_id AT5G59810.1p  transcript_id AT5G59810.1  protein_id AT5G59810.1p  transcript_id AT5G59810.1  
At5g59820	chr5:024103073	0.0	W/24103073-24103561	AT5G59820.1  CDS  gene_syn MMN10.11, MMN10_11, RESPONSIVE TO HIGH LIGHT 41, RHL41, ZAT12  gene RHL41  function Encodes a zinc finger protein involved in high light and cold acclimation. Overexpression of this putative transcription factor increases the expression level of 9 cold-responsive genes and represses the expression level of 15 cold-responsive genes, including CBF genes. Also, lines overexpressing this gene exhibits a small but reproducible increase in freeze tolerance. Because of the repression of the CBF genes by the overexpression of this gene, the authors speculate that this gene may be involved in negative regulatory circuit of the CBF pathway.  go_component intracellular|GO:0005622||IEA  go_process response to oxidative stress|GO:0006979|16183833|IEP  go_process response to oxidative stress|GO:0006979|16183833|IMP  go_process circadian rhythm|GO:0007623|15728337|IEP  go_process response to heat|GO:0009408|16183833|IEP  go_process response to heat|GO:0009408|16183833|IMP  go_process response to cold|GO:0009409|15634197|IEP  go_process response to light stimulus|GO:0009416|16183833|IMP  go_process response to wounding|GO:0009611|16183833|IEP  go_process response to wounding|GO:0009611|16183833|IMP  go_process cold acclimation|GO:0009631|15634197|IMP  go_process photosynthetic acclimation|GO:0009643||IMP  go_process response to chitin|GO:0010200|15923325|IEP  go_process response to chitin|GO:0010200|17722694|IEP  go_process response to UV-B|GO:0010224|18266923|IEP  go_process hyperosmotic salinity response|GO:0042538|16183833|IEP  go_process hyperosmotic salinity response|GO:0042538|16183833|IMP  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product RHL41 (RESPONSIVE TO HIGH LIGHT 41); nucleic acid binding / transcription factor/ zinc ion binding  note RESPONSIVE TO HIGH LIGHT 41 (RHL41); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: in 11 processes; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT3G46080.1); Has 532 Blast hits to 516 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 88; Fungi - 0; Plants - 444; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G59820.1p  transcript_id AT5G59820.1  protein_id AT5G59820.1p  transcript_id AT5G59820.1  
At5g59830	chr5:024105423	0.0	W/24105423-24105425,24105526-24106470,24106568-24106633,24106722-24106920,24107007-24107071	AT5G59830.1  CDS  gene_syn MMN10.5, MMN10_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13660.2); Has 80 Blast hits to 64 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G59830.1p  transcript_id AT5G59830.1  protein_id AT5G59830.1p  transcript_id AT5G59830.1  
At5g59830	chr5:024105423	0.0	W/24105423-24105425,24105526-24106470,24106568-24106633,24106722-24106920,24107007-24107071	AT5G59830.2  CDS  gene_syn MMN10.5, MMN10_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13660.2); Has 80 Blast hits to 64 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G59830.2p  transcript_id AT5G59830.2  protein_id AT5G59830.2p  transcript_id AT5G59830.2  
At5g59840	chr5:024108977	0.0	C/24108977-24109049,24108696-24108768,24108500-24108600,24108198-24108263,24108012-24108109,24107841-24107903,24107643-24107735,24107450-24107533	AT5G59840.1  CDS  gene_syn MMN10.12, MMN10_12  go_component plasma membrane|GO:0005886|15060130|IDA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product Ras-related GTP-binding family protein  note Ras-related GTP-binding family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: ATRAB8; GTP binding (TAIR:AT3G53610.3); Has 23810 Blast hits to 23756 proteins in 654 species: Archae - 17; Bacteria - 124; Metazoa - 13243; Fungi - 2913; Plants - 2226; Viruses - 19; Other Eukaryotes - 5268 (source: NCBI BLink).  protein_id AT5G59840.1p  transcript_id AT5G59840.1  protein_id AT5G59840.1p  transcript_id AT5G59840.1  
At5g59845	chr5:024111443	0.0	W/24111443-24111524,24111621-24111808	AT5G59845.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process response to gibberellin stimulus|GO:0009739||ISS  go_function molecular_function|GO:0003674||ND  product gibberellin-regulated family protein  note gibberellin-regulated family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to gibberellin stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: gibberellin-regulated family protein (TAIR:AT2G39540.1); Has 250 Blast hits to 250 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 250; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G59845.1p  transcript_id AT5G59845.1  protein_id AT5G59845.1p  transcript_id AT5G59845.1  
At5g59850	chr5:024112952	0.0	C/24112952-24113084,24112693-24112853,24112499-24112597	AT5G59850.1  CDS  gene_syn MMN10.16  go_component cell wall|GO:0005618|16287169|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S15A (RPS15aF)  note 40S ribosomal protein S15A (RPS15aF); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cell wall, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8 (InterPro:IPR000630); BEST Arabidopsis thaliana protein match is: RPS15A (ribosomal protein s15a); structural constituent of ribosome (TAIR:AT1G07770.2); Has 2190 Blast hits to 2190 proteins in 758 species: Archae - 184; Bacteria - 927; Metazoa - 327; Fungi - 130; Plants - 162; Viruses - 0; Other Eukaryotes - 460 (source: NCBI BLink).  protein_id AT5G59850.1p  transcript_id AT5G59850.1  protein_id AT5G59850.1p  transcript_id AT5G59850.1  
At5g59860	chr5:024113462	0.0	W/24113462-24113620,24113732-24113801,24113903-24113956,24114039-24114145,24114366-24114449	AT5G59860.1  CDS  gene_syn MMN10.9, MMN10_9  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein, putative (TAIR:AT3G46020.1); Has 7533 Blast hits to 6656 proteins in 424 species: Archae - 2; Bacteria - 388; Metazoa - 4750; Fungi - 654; Plants - 1145; Viruses - 0; Other Eukaryotes - 594 (source: NCBI BLink).  protein_id AT5G59860.1p  transcript_id AT5G59860.1  protein_id AT5G59860.1p  transcript_id AT5G59860.1  
At5g59870	chr5:024115932	0.0	C/24115932-24116144,24115605-24115844	AT5G59870.1  CDS  gene_syn HTA6, MMN10.22, MMN10_22  gene HTA6  function Encodes HTA6, a histone H2A protein.  go_component nucleolus|GO:0005730|15496452|IDA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product HTA6; DNA binding  note HTA6; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleolus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: HTA12; DNA binding (TAIR:AT5G02560.1); Has 3272 Blast hits to 3272 proteins in 305 species: Archae - 0; Bacteria - 0; Metazoa - 2198; Fungi - 245; Plants - 451; Viruses - 0; Other Eukaryotes - 378 (source: NCBI BLink).  protein_id AT5G59870.1p  transcript_id AT5G59870.1  protein_id AT5G59870.1p  transcript_id AT5G59870.1  
At5g59880	chr5:024120382	0.0	W/24120382-24120384,24121119-24121384,24121478-24121496,24121542-24121628	AT5G59880.2  CDS  gene_syn ACTIN DEPOLYMERIZING FACTOR 3, ADF3, MMN10.4, MMN10_4  gene ADF3  function Encodes actin depolymerizing factor 3 (ADF3).  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function actin binding|GO:0003779||IEA  go_component intracellular|GO:0005622||ISS  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process response to oxidative stress|GO:0006979|12492832|IDA  product ADF3 (ACTIN DEPOLYMERIZING FACTOR 3); actin binding  note ACTIN DEPOLYMERIZING FACTOR 3 (ADF3); FUNCTIONS IN: actin binding; INVOLVED IN: response to oxidative stress, response to cadmium ion; LOCATED IN: mitochondrion, intracellular, chloroplast, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding, cofilin/tropomyosin type (InterPro:IPR002108); BEST Arabidopsis thaliana protein match is: ADF4 (ACTIN DEPOLYMERIZING FACTOR 4); actin binding (TAIR:AT5G59890.1); Has 791 Blast hits to 791 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 298; Fungi - 94; Plants - 306; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT5G59880.2p  transcript_id AT5G59880.2  protein_id AT5G59880.2p  transcript_id AT5G59880.2  
At5g59880	chr5:024120382	0.0	W/24120382-24120384,24121119-24121384,24121478-24121628	AT5G59880.1  CDS  gene_syn ACTIN DEPOLYMERIZING FACTOR 3, ADF3, MMN10.4, MMN10_4  gene ADF3  function Encodes actin depolymerizing factor 3 (ADF3).  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function actin binding|GO:0003779||IEA  go_component intracellular|GO:0005622||ISS  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process response to oxidative stress|GO:0006979|12492832|IDA  product ADF3 (ACTIN DEPOLYMERIZING FACTOR 3); actin binding  note ACTIN DEPOLYMERIZING FACTOR 3 (ADF3); FUNCTIONS IN: actin binding; INVOLVED IN: response to oxidative stress, response to cadmium ion; LOCATED IN: mitochondrion, intracellular, chloroplast, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding, cofilin/tropomyosin type (InterPro:IPR002108); BEST Arabidopsis thaliana protein match is: ADF4 (ACTIN DEPOLYMERIZING FACTOR 4); actin binding (TAIR:AT5G59890.1); Has 1025 Blast hits to 1024 proteins in 201 species: Archae - 0; Bacteria - 3; Metazoa - 476; Fungi - 106; Plants - 307; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).  protein_id AT5G59880.1p  transcript_id AT5G59880.1  protein_id AT5G59880.1p  transcript_id AT5G59880.1  
At5g59890	chr5:024122545	0.0	W/24122545-24122547,24123089-24123354,24123446-24123596	AT5G59890.1  CDS  gene_syn ACTIN DEPOLYMERIZING FACTOR 4, ADF4, ATADF4, MMN10.8, MMN10_8  gene ADF4  function actin depolymerizing factor 4 (ADF4) mRNA, complete cds  go_component intracellular|GO:0005622||IEA  go_function actin binding|GO:0003779||IEA  go_component intracellular|GO:0005622||ISS  go_process defense response signaling pathway, resistance gene-dependent|GO:0009870|19346440|IMP  go_process defense response to bacterium|GO:0042742|19346440|IMP  product ADF4 (ACTIN DEPOLYMERIZING FACTOR 4); actin binding  note ACTIN DEPOLYMERIZING FACTOR 4 (ADF4); FUNCTIONS IN: actin binding; INVOLVED IN: defense response signaling pathway, resistance gene-dependent, defense response to bacterium; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding, cofilin/tropomyosin type (InterPro:IPR002108); BEST Arabidopsis thaliana protein match is: ADF1 (ACTIN DEPOLYMERIZING FACTOR 1); actin binding (TAIR:AT3G46010.1); Has 1031 Blast hits to 1028 proteins in 203 species: Archae - 0; Bacteria - 3; Metazoa - 476; Fungi - 115; Plants - 307; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink).  protein_id AT5G59890.1p  transcript_id AT5G59890.1  protein_id AT5G59890.1p  transcript_id AT5G59890.1  
At5g59890	chr5:024123107	0.0	W/24123107-24123354,24123446-24123596	AT5G59890.2  CDS  gene_syn ACTIN DEPOLYMERIZING FACTOR 4, ADF4, ATADF4, MMN10.8, MMN10_8  gene ADF4  function actin depolymerizing factor 4 (ADF4) mRNA, complete cds  go_component intracellular|GO:0005622||IEA  go_function actin binding|GO:0003779||IEA  go_component intracellular|GO:0005622||ISS  go_process defense response signaling pathway, resistance gene-dependent|GO:0009870|19346440|IMP  go_process defense response to bacterium|GO:0042742|19346440|IMP  product ADF4 (ACTIN DEPOLYMERIZING FACTOR 4); actin binding  note ACTIN DEPOLYMERIZING FACTOR 4 (ADF4); FUNCTIONS IN: actin binding; INVOLVED IN: defense response signaling pathway, resistance gene-dependent, defense response to bacterium; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding, cofilin/tropomyosin type (InterPro:IPR002108); BEST Arabidopsis thaliana protein match is: ADF1 (ACTIN DEPOLYMERIZING FACTOR 1); actin binding (TAIR:AT3G46010.2); Has 1024 Blast hits to 1023 proteins in 201 species: Archae - 0; Bacteria - 3; Metazoa - 471; Fungi - 115; Plants - 307; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).  protein_id AT5G59890.2p  transcript_id AT5G59890.2  protein_id AT5G59890.2p  transcript_id AT5G59890.2  
At5g59900	chr5:024123983	0.0	C/24123983-24126706	AT5G59900.1  CDS  gene_syn MMN10.14, MMN10_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, sepal, flower, seed; EXPRESSED DURING: F mature embryo stage, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G55840.1); Has 31010 Blast hits to 6141 proteins in 191 species: Archae - 6; Bacteria - 20; Metazoa - 1084; Fungi - 873; Plants - 27310; Viruses - 0; Other Eukaryotes - 1717 (source: NCBI BLink).  protein_id AT5G59900.1p  transcript_id AT5G59900.1  protein_id AT5G59900.1p  transcript_id AT5G59900.1  
At5g59910	chr5:024127206	0.0	W/24127206-24127658	AT5G59910.1  CDS  gene_syn HTB4, MMN10.15, MMN10_15  gene HTB4  go_component nucleolus|GO:0005730|15496452|IDA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product HTB4; DNA binding  note HTB4; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H2B, putative (TAIR:AT2G28720.1); Has 3079 Blast hits to 2919 proteins in 300 species: Archae - 0; Bacteria - 69; Metazoa - 1920; Fungi - 175; Plants - 374; Viruses - 0; Other Eukaryotes - 541 (source: NCBI BLink).  protein_id AT5G59910.1p  transcript_id AT5G59910.1  protein_id AT5G59910.1p  transcript_id AT5G59910.1  
At5g59920	chr5:024128756	0.0	W/24128756-24130888	AT5G59920.1  CDS  gene_syn MMN10.13, MMN10_13, ULI3  gene ULI3  function Isolated in a screen for UV-B insensitive mutants using a hypocotyl growth inhibition assay. Mutants are defective in a number of UV-B responses.  go_component cytoplasm|GO:0005737|12581316|IDA  go_process response to UV|GO:0009411|12581316|IMP  go_process response to UV-B|GO:0010224|12581316|IMP  go_function diacylglycerol binding|GO:0019992|12581316|ISS  go_function heme binding|GO:0020037|12581316|ISS  product ULI3; diacylglycerol binding / heme binding  note ULI3; FUNCTIONS IN: diacylglycerol binding, heme binding; INVOLVED IN: response to UV, response to UV-B; LOCATED IN: cytoplasm; EXPRESSED IN: shoot; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Zinc finger, PHD-type (InterPro:IPR001965), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G01350.1); Has 50384 Blast hits to 2262 proteins in 218 species: Archae - 124; Bacteria - 44408; Metazoa - 1491; Fungi - 430; Plants - 1523; Viruses - 105; Other Eukaryotes - 2303 (source: NCBI BLink).  protein_id AT5G59920.1p  transcript_id AT5G59920.1  protein_id AT5G59920.1p  transcript_id AT5G59920.1  
At5g59930	chr5:024134526	0.0	W/24134526-24136496	AT5G59930.1  CDS  gene_syn MMN10.17, MMN10_17  go_process intracellular signaling cascade|GO:0007242||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product DC1 domain-containing protein / UV-B light-insensitive protein, putative  note DC1 domain-containing protein / UV-B light-insensitive protein, putative; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular signaling cascade; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, ZZ-type (InterPro:IPR000433), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein / UV-B light-insensitive protein, putative (TAIR:AT5G59940.1); Has 1438 Blast hits to 535 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 1387; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT5G59930.1p  transcript_id AT5G59930.1  protein_id AT5G59930.1p  transcript_id AT5G59930.1  
At5g59940	chr5:024137412	0.0	W/24137412-24139367	AT5G59940.1  CDS  gene_syn MMN10.19, MMN10_19  go_process intracellular signaling cascade|GO:0007242||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product DC1 domain-containing protein / UV-B light-insensitive protein, putative  note DC1 domain-containing protein / UV-B light-insensitive protein, putative; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: intracellular signaling cascade; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein / UV-B light-insensitive protein, putative (TAIR:AT5G59930.1); Has 1388 Blast hits to 553 proteins in 36 species: Archae - 0; Bacteria - 2; Metazoa - 37; Fungi - 11; Plants - 1320; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT5G59940.1p  transcript_id AT5G59940.1  protein_id AT5G59940.1p  transcript_id AT5G59940.1  
At5g59945	chr5:024139946	0.0	C/24139946-24140019	AT5G59945.1  tRNA  gene_syn 67890.TRNA-VAL-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Val (anticodon: AAC)  transcript_id AT5G59945.1  
At5g59950	chr5:024140235	0.0	W/24140235-24140399,24140602-24140745,24140894-24140962,24141056-24141234,24141333-24141504	AT5G59950.3  CDS  gene_syn MMN10.26, MMN10_26  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product RNA and export factor-binding protein, putative  note RNA and export factor-binding protein, putative; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA and export factor-binding protein, putative (TAIR:AT5G02530.1); Has 8995 Blast hits to 7946 proteins in 569 species: Archae - 14; Bacteria - 857; Metazoa - 4515; Fungi - 1270; Plants - 1389; Viruses - 32; Other Eukaryotes - 918 (source: NCBI BLink).  protein_id AT5G59950.3p  transcript_id AT5G59950.3  protein_id AT5G59950.3p  transcript_id AT5G59950.3  
At5g59950	chr5:024140235	0.0	W/24140235-24140405,24140602-24140745,24140894-24140962,24141056-24141234,24141333-24141504	AT5G59950.1  CDS  gene_syn MMN10.26, MMN10_26  go_component chloroplast|GO:0009507||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product RNA and export factor-binding protein, putative  note RNA and export factor-binding protein, putative; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA and export factor-binding protein, putative (TAIR:AT5G02530.1); Has 9001 Blast hits to 7949 proteins in 569 species: Archae - 14; Bacteria - 859; Metazoa - 4521; Fungi - 1273; Plants - 1384; Viruses - 32; Other Eukaryotes - 918 (source: NCBI BLink).  protein_id AT5G59950.1p  transcript_id AT5G59950.1  protein_id AT5G59950.1p  transcript_id AT5G59950.1  
At5g59950	chr5:024140235	0.0	W/24140235-24140405,24140602-24140745,24140894-24140962,24141056-24141234,24141338-24141410	AT5G59950.4  CDS  gene_syn MMN10.26, MMN10_26  go_component chloroplast|GO:0009507||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product RNA and export factor-binding protein, putative  note RNA and export factor-binding protein, putative; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA and export factor-binding protein, putative (TAIR:AT5G02530.1); Has 4318 Blast hits to 3983 proteins in 353 species: Archae - 2; Bacteria - 318; Metazoa - 2167; Fungi - 747; Plants - 681; Viruses - 0; Other Eukaryotes - 403 (source: NCBI BLink).  protein_id AT5G59950.4p  transcript_id AT5G59950.4  protein_id AT5G59950.4p  transcript_id AT5G59950.4  
At5g59950	chr5:024140629	0.0	W/24140629-24140745,24140894-24140962,24141056-24141234,24141333-24141504	AT5G59950.2  CDS  gene_syn MMN10.26, MMN10_26  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product RNA and export factor-binding protein, putative  note RNA and export factor-binding protein, putative; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA and export factor-binding protein, putative (TAIR:AT5G02530.1); Has 8487 Blast hits to 7491 proteins in 566 species: Archae - 14; Bacteria - 853; Metazoa - 4177; Fungi - 1199; Plants - 1343; Viruses - 32; Other Eukaryotes - 869 (source: NCBI BLink).  protein_id AT5G59950.2p  transcript_id AT5G59950.2  protein_id AT5G59950.2p  transcript_id AT5G59950.2  
At5g59960	chr5:024145048	0.0	C/24145048-24145140,24144636-24144720,24144353-24144549,24144141-24144223,24143838-24143883,24143445-24143501,24143314-24143368,24143139-24143239,24142981-24143044,24142761-24142894,24142352-24142516	AT5G59960.1  CDS  gene_syn MMN10.21, MMN10_21  go_component nucleus|GO:0005634|14617066|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 20 Blast hits to 20 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G59960.1p  transcript_id AT5G59960.1  protein_id AT5G59960.1p  transcript_id AT5G59960.1  
At5g59970	chr5:024146352	0.0	C/24146352-24146663	AT5G59970.1  CDS  gene_syn MMN10.3  go_component vacuole|GO:0005773|15539469|IDA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product histone H4  note histone H4; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125), Histone H4 (InterPro:IPR001951); BEST Arabidopsis thaliana protein match is: histone H4 (TAIR:AT5G59690.1); Has 2716 Blast hits to 2716 proteins in 361 species: Archae - 0; Bacteria - 0; Metazoa - 1566; Fungi - 282; Plants - 355; Viruses - 6; Other Eukaryotes - 507 (source: NCBI BLink).  protein_id AT5G59970.1p  transcript_id AT5G59970.1  protein_id AT5G59970.1p  transcript_id AT5G59970.1  
At5g59980	chr5:024147207	0.0	W/24147207-24147641,24147748-24147825,24147909-24147989,24148085-24148239,24148320-24149272,24149349-24149392	AT5G59980.1  CDS  gene_syn MMN10.23, MMN10_23  go_process tRNA processing|GO:0008033||IEA  go_function catalytic activity|GO:0003824||IEA  go_function ribonuclease activity|GO:0004540||IEA  go_component cellular_component|GO:0005575||ND  go_process tRNA processing|GO:0008033||ISS  go_function tRNA-intron endonuclease activity|GO:0000213||ISS  product RNase P subunit p30 family protein  note RNase P subunit p30 family protein; FUNCTIONS IN: tRNA-intron endonuclease activity, ribonuclease activity, catalytic activity; INVOLVED IN: tRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: trichome; CONTAINS InterPro DOMAIN/s: Polymerase and histidinol phosphatase-like (InterPro:IPR016195), RNase P subunit p30 (InterPro:IPR002738); Has 291 Blast hits to 291 proteins in 131 species: Archae - 11; Bacteria - 3; Metazoa - 124; Fungi - 87; Plants - 17; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT5G59980.1p  transcript_id AT5G59980.1  protein_id AT5G59980.1p  transcript_id AT5G59980.1  
At5g59980	chr5:024147207	0.0	W/24147207-24147641,24147748-24147825,24147909-24147989,24148085-24148239,24148320-24149578,24149674-24149783	AT5G59980.2  CDS  gene_syn MMN10.23, MMN10_23  go_process tRNA processing|GO:0008033||IEA  go_function catalytic activity|GO:0003824||IEA  go_function ribonuclease activity|GO:0004540||IEA  go_component cellular_component|GO:0005575||ND  go_process tRNA processing|GO:0008033||ISS  go_function tRNA-intron endonuclease activity|GO:0000213||ISS  product RNase P subunit p30 family protein  note RNase P subunit p30 family protein; FUNCTIONS IN: ribonuclease activity, tRNA-intron endonuclease activity, catalytic activity; INVOLVED IN: tRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: trichome; CONTAINS InterPro DOMAIN/s: Polymerase and histidinol phosphatase-like (InterPro:IPR016195), RNase P subunit p30 (InterPro:IPR002738).  protein_id AT5G59980.2p  transcript_id AT5G59980.2  protein_id AT5G59980.2p  transcript_id AT5G59980.2  
At5g59990	chr5:024152692	0.0	C/24152692-24153084,24152262-24152432	AT5G59990.2  CDS  gene_syn MMN10.24, MMN10_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, stem, leaf whorl, flower; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41380.1); Has 73 Blast hits to 73 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G59990.2p  transcript_id AT5G59990.2  protein_id AT5G59990.2p  transcript_id AT5G59990.2  
At5g59990	chr5:024152692	0.0	C/24152692-24153084,24152274-24152432,24151206-24151379	AT5G59990.1  CDS  gene_syn MMN10.24, MMN10_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, stem, leaf whorl, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41380.1); Has 918 Blast hits to 918 proteins in 64 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 885; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT5G59990.1p  transcript_id AT5G59990.1  protein_id AT5G59990.1p  transcript_id AT5G59990.1  
At5g60000	chr5:024159331	0.0	C/24159331-24159780	AT5G60000.1  CDS  gene_syn MMN10.25, MMN10_25  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22970.1); Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G60000.1p  transcript_id AT5G60000.1  protein_id AT5G60000.1p  transcript_id AT5G60000.1  
At5g60010	chr5:024160456	0.0	W/24160456-24160909,24161170-24161332,24161441-24161603,24161707-24162510,24162609-24162707,24162924-24163039,24163128-24163230,24163356-24163462,24163578-24163737,24163838-24164011,24164134-24164262,24164454-24164532,24164646-24164755	AT5G60010.1  CDS  gene_syn MMN10.18, MMN10_18  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function iron ion binding|GO:0005506||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor|GO:0050664||IEA  go_function superoxide-generating NADPH oxidase activity|GO:0016175||ISS  product FAD binding / calcium ion binding / electron carrier/ iron ion binding / oxidoreductase/ oxidoreductase, acting on NADH or NADPH, with oxygen as acceptor / peroxidase/ superoxide-generating NADPH oxidase  note FAD binding / calcium ion binding / electron carrier/ iron ion binding / oxidoreductase/ oxidoreductase, acting on NADH or NADPH, with oxygen as acceptor / peroxidase/ superoxide-generating NADPH oxidase; FUNCTIONS IN: in 8 functions; INVOLVED IN: oxidation reduction; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-HAND 1 (InterPro:IPR018247), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), Ferric reductase, NAD binding (InterPro:IPR013121), NADPH oxidase Respiratory burst (InterPro:IPR013623), EF-HAND 2 (InterPro:IPR018249), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: ferric reductase-like transmembrane component family protein (TAIR:AT3G45810.1); Has 1244 Blast hits to 1158 proteins in 195 species: Archae - 0; Bacteria - 81; Metazoa - 578; Fungi - 207; Plants - 270; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT5G60010.1p  transcript_id AT5G60010.1  protein_id AT5G60010.1p  transcript_id AT5G60010.1  
At5g60022	chr5:024167141	0.0	C/24167141-24170261	AT5G60022.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT5G60020  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G60022.1  
At5g60020	chr5:024168072	0.0	W/24168072-24168161,24168239-24168390,24168476-24168720,24168806-24168934,24169019-24170005,24170093-24170223	AT5G60020.1  CDS  gene_syn LAC17, MMN10.20, MMN10_20, laccase 17  gene LAC17  function putative laccase, a member of laccase family of genes (17 members in Arabidopsis).  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process lignin catabolic process|GO:0046274||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function laccase activity|GO:0008471|15940465|ISS  product LAC17 (laccase 17); laccase  note laccase 17 (LAC17); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: LAC2 (laccase 2); laccase (TAIR:AT2G29130.1); Has 6721 Blast hits to 5598 proteins in 889 species: Archae - 13; Bacteria - 2253; Metazoa - 444; Fungi - 2714; Plants - 944; Viruses - 0; Other Eukaryotes - 353 (source: NCBI BLink).  protein_id AT5G60020.1p  transcript_id AT5G60020.1  protein_id AT5G60020.1p  transcript_id AT5G60020.1  
At5g60030	chr5:024172082	0.0	C/24172082-24172960	AT5G60030.1  CDS  gene_syn MGO3.1  product unknown protein  note unknown protein; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75335.1); Has 210106 Blast hits to 83883 proteins in 2248 species: Archae - 772; Bacteria - 18533; Metazoa - 91346; Fungi - 18704; Plants - 7840; Viruses - 1079; Other Eukaryotes - 71832 (source: NCBI BLink).  protein_id AT5G60030.1p  transcript_id AT5G60030.1  protein_id AT5G60030.1p  transcript_id AT5G60030.1  
At5g60040	chr5:024173590	0.0	W/24173590-24173657,24174068-24174197,24174402-24174551,24174765-24174939,24175257-24175450,24175623-24175732,24175821-24175920,24176129-24176341,24176430-24176578,24176954-24177095,24177177-24177317,24177766-24177954,24178331-24178538,24178637-24178730,24178960-24179194,24179518-24179709,24179973-24180071,24180247-24180450,24180532-24180747,24180984-24181131,24181231-24181382,24181594-24181749,24181829-24181939,24182071-24182165,24182466-24182670,24182782-24182984,24183218-24183269	AT5G60040.1  CDS  gene_syn MGO3.13, MGO3_13, NRPC1  gene NRPC1  function Encodes a subunit of RNA polymerase III (aka RNA polymerase C).  go_component nucleus|GO:0005634||IEA  go_process transcription|GO:0006350||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function ribonucleoside binding|GO:0032549||IEA  go_component nucleus|GO:0005634||ISS  go_process transcription|GO:0006350||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product NRPC1; DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding / zinc ion binding  note NRPC1; FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding, zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), DNA-directed RNA polymerase III largest subunit (InterPro:IPR015700), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081); BEST Arabidopsis thaliana protein match is: NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA binding / DNA-directed RNA polymerase (TAIR:AT4G35800.1); Has 19966 Blast hits to 17041 proteins in 4847 species: Archae - 331; Bacteria - 4331; Metazoa - 1599; Fungi - 2294; Plants - 3292; Viruses - 214; Other Eukaryotes - 7905 (source: NCBI BLink).  protein_id AT5G60040.1p  transcript_id AT5G60040.1  protein_id AT5G60040.1p  transcript_id AT5G60040.1  
At5g60050	chr5:024184710	0.0	C/24184710-24185264,24183680-24184624	AT5G60050.1  CDS  gene_syn MGO3.3, MGO3_3  go_component chloroplast|GO:0009507||IEA  go_function protein binding|GO:0005515||IEA  product PRLI-interacting factor-related  note PRLI-interacting factor-related; FUNCTIONS IN: protein binding; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: PRLI-interacting factor-related (TAIR:AT1G63850.1); Has 176 Blast hits to 176 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 171; Viruses - 2; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G60050.1p  transcript_id AT5G60050.1  protein_id AT5G60050.1p  transcript_id AT5G60050.1  
At5g60060	chr5:024188600	0.0	C/24188600-24189724	AT5G60060.1  CDS  gene_syn MGO3.4, MGO3_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G17030.1); Has 77 Blast hits to 75 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G60060.1p  transcript_id AT5G60060.1  protein_id AT5G60060.1p  transcript_id AT5G60060.1  
At5g60070	chr5:024192207	0.0	C/24192207-24192570,24191531-24191943,24190440-24191309	AT5G60070.1  CDS  gene_syn MGO3.5, MGO3_5  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; EXPRESSED IN: flower, pollen tube; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT1G07710.1); Has 53266 Blast hits to 22978 proteins in 784 species: Archae - 32; Bacteria - 3826; Metazoa - 27036; Fungi - 4821; Plants - 2861; Viruses - 514; Other Eukaryotes - 14176 (source: NCBI BLink).  protein_id AT5G60070.1p  transcript_id AT5G60070.1  protein_id AT5G60070.1p  transcript_id AT5G60070.1  
At5g60080	chr5:024194750	0.0	C/24194750-24194909,24194269-24194399,24194000-24194189,24193519-24193934,24193181-24193417	AT5G60080.1  CDS  gene_syn MGO3.6, MGO3_6  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G60090.1); Has 74795 Blast hits to 74062 proteins in 2131 species: Archae - 38; Bacteria - 6443; Metazoa - 32387; Fungi - 5610; Plants - 17580; Viruses - 446; Other Eukaryotes - 12291 (source: NCBI BLink).  protein_id AT5G60080.1p  transcript_id AT5G60080.1  protein_id AT5G60080.1p  transcript_id AT5G60080.1  
At5g60090	chr5:024197560	0.0	C/24197560-24197725,24197203-24197372,24196931-24197120,24196421-24196854,24196082-24196318	AT5G60090.1  CDS  gene_syn MGO3.7, MGO3_7  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G60080.1); Has 67316 Blast hits to 66673 proteins in 2401 species: Archae - 29; Bacteria - 5505; Metazoa - 30290; Fungi - 4394; Plants - 16569; Viruses - 169; Other Eukaryotes - 10360 (source: NCBI BLink).  protein_id AT5G60090.1p  transcript_id AT5G60090.1  protein_id AT5G60090.1p  transcript_id AT5G60090.1  
At5g60100	chr5:024200235	0.0	C/24200235-24200502,24199985-24200146,24199755-24199888,24199500-24199673,24199261-24199408,24198859-24199138,24198748-24198778,24198483-24198668,24198346-24198413,24198215-24198251	AT5G60100.1  CDS  gene_syn APRR3, ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 3, MGO3.8, MGO3_8, PRR3, PSEUDO-RESPONSE REGULATOR 3  gene APRR3  function Encodes pseudo-response regulator 3 (APRR3/PRR3). PRR3 transcript levels vary in a circadian pattern with peak expression at dusk under long and short day conditions. PRR3 affects the period of the circadian clock and seedlings with reduced levels of PRR3 have shorter periods, based on transcriptional assays of clock-regulated genes. PRR3 is expressed in the vasculature of cotyledons and leaves where it may help stabilize the TOC1 protein by preventing interactions between TOC1 and the F-box protein ZTL.  go_process circadian rhythm|GO:0007623|11100772|TAS  go_process phosphorylation|GO:0016310|12091722|IDA  go_process negative regulation of protein binding|GO:0032091|18055606|IDA  go_process regulation of circadian rhythm|GO:0042752|11100772|IEP  go_function two-component response regulator activity|GO:0000156||ISS  go_function transcription regulator activity|GO:0030528|12068096|TAS  product APRR3 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 3); transcription regulator/ two-component response regulator  note ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 3 (APRR3); FUNCTIONS IN: transcription regulator activity, two-component response regulator activity; INVOLVED IN: negative regulation of protein binding, regulation of circadian rhythm, circadian rhythm, phosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver region (InterPro:IPR001789), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: APRR9 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9); protein binding / transcription regulator/ two-component response regulator (TAIR:AT2G46790.1); Has 32350 Blast hits to 30156 proteins in 1739 species: Archae - 115; Bacteria - 23641; Metazoa - 1428; Fungi - 456; Plants - 1539; Viruses - 7; Other Eukaryotes - 5164 (source: NCBI BLink).  protein_id AT5G60100.1p  transcript_id AT5G60100.1  protein_id AT5G60100.1p  transcript_id AT5G60100.1  
At5g60110	chr5:024201954	0.0	W/24201954-24202937	AT5G60110.1  CDS  gene_syn APUM18, Arabidopsis Pumilio 18, MGO3.9, MGO3_9  gene APUM18  go_component chloroplast|GO:0009507||IEA  go_function RNA binding|GO:0003723||IEA  go_function binding|GO:0005488||IEA  go_function RNA binding|GO:0003723||ISS  product APUM18 (Arabidopsis Pumilio 18); RNA binding / binding  note Arabidopsis Pumilio 18 (APUM18); FUNCTIONS IN: RNA binding, binding; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding region (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: APUM19 (Arabidopsis Pumilio 19); RNA binding / binding (TAIR:AT5G60180.1); Has 1167 Blast hits to 867 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 263; Fungi - 273; Plants - 285; Viruses - 0; Other Eukaryotes - 346 (source: NCBI BLink).  protein_id AT5G60110.1p  transcript_id AT5G60110.1  protein_id AT5G60110.1p  transcript_id AT5G60110.1  
At5g60120	chr5:024208153	0.0	W/24208153-24208685,24208823-24208848,24208938-24208968,24209074-24209161,24209235-24209380,24209754-24209842,24209971-24210095,24210296-24210409,24210762-24211067	AT5G60120.1  CDS  gene_syn MGO3.10, MGO3_10, TOE2  gene TOE2  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product TOE2; DNA binding / transcription factor  note TOE2; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: RAP2.7 (RELATED TO AP2.7); DNA binding / transcription factor (TAIR:AT2G28550.1); Has 3198 Blast hits to 2959 proteins in 182 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 3139; Viruses - 5; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT5G60120.1p  transcript_id AT5G60120.1  protein_id AT5G60120.1p  transcript_id AT5G60120.1  
At5g60130	chr5:024212956	0.0	C/24212956-24212958,24212216-24212854,24211871-24212131	AT5G60130.1  CDS  gene_syn MGO3.11, MGO3_11  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcriptional factor B3 family protein  note transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT5G60140.1); Has 30512 Blast hits to 5620 proteins in 469 species: Archae - 85; Bacteria - 21303; Metazoa - 2878; Fungi - 1443; Plants - 584; Viruses - 286; Other Eukaryotes - 3933 (source: NCBI BLink).  protein_id AT5G60130.1p  transcript_id AT5G60130.1  protein_id AT5G60130.1p  transcript_id AT5G60130.1  
At5g60140	chr5:024215339	0.0	C/24215339-24215351,24215186-24215256,24214458-24215114,24214077-24214322	AT5G60140.1  CDS  gene_syn MGO3.2, MGO3_2  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcriptional factor B3 family protein  note transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT5G60130.1); Has 35622 Blast hits to 9758 proteins in 600 species: Archae - 149; Bacteria - 18835; Metazoa - 6044; Fungi - 2604; Plants - 1070; Viruses - 420; Other Eukaryotes - 6500 (source: NCBI BLink).  protein_id AT5G60140.1p  transcript_id AT5G60140.1  protein_id AT5G60140.1p  transcript_id AT5G60140.1  
At5g60142	chr5:024217579	0.0	C/24217579-24217591,24217394-24217464,24216744-24217313,24216180-24216425	AT5G60142.1  CDS  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT5G60130.1); Has 1430 Blast hits to 922 proteins in 149 species: Archae - 0; Bacteria - 131; Metazoa - 241; Fungi - 138; Plants - 157; Viruses - 83; Other Eukaryotes - 680 (source: NCBI BLink).  protein_id AT5G60142.1p  transcript_id AT5G60142.1  protein_id AT5G60142.1p  transcript_id AT5G60142.1  
At5g60150	chr5:024218211	0.0	W/24218211-24218385,24218563-24218760,24218858-24219077,24219463-24219581,24219694-24219827,24219955-24220218,24220304-24222516,24222613-24222715,24222841-24222921,24223165-24223245	AT5G60150.1  CDS  gene_syn F15L12.4, F15L12_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; Has 1738 Blast hits to 554 proteins in 141 species: Archae - 2; Bacteria - 150; Metazoa - 248; Fungi - 145; Plants - 60; Viruses - 2; Other Eukaryotes - 1131 (source: NCBI BLink).  protein_id AT5G60150.1p  transcript_id AT5G60150.1  protein_id AT5G60150.1p  transcript_id AT5G60150.1  
At5g60160	chr5:024226711	0.0	C/24226711-24226783,24226469-24226604,24226302-24226380,24226009-24226211,24225782-24225854,24225443-24225544,24225193-24225348,24224598-24224771,24224420-24224494,24224191-24224331,24223887-24224108	AT5G60160.1  CDS  gene_syn F15L12.1, F15L12_1  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function aminopeptidase activity|GO:0004177||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component vacuole|GO:0005773||ISS  go_process proteolysis|GO:0006508||ISS  product aspartyl aminopeptidase, putative  note aspartyl aminopeptidase, putative; FUNCTIONS IN: aminopeptidase activity, zinc ion binding; INVOLVED IN: response to cadmium ion, proteolysis; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M18, aminopeptidase I (InterPro:IPR001948); BEST Arabidopsis thaliana protein match is: aspartyl aminopeptidase, putative (TAIR:AT5G04710.1); Has 1278 Blast hits to 1277 proteins in 389 species: Archae - 1; Bacteria - 687; Metazoa - 123; Fungi - 173; Plants - 41; Viruses - 0; Other Eukaryotes - 253 (source: NCBI BLink).  protein_id AT5G60160.1p  transcript_id AT5G60160.1  protein_id AT5G60160.1p  transcript_id AT5G60160.1  
At5g60170	chr5:024228178	0.0	W/24228178-24228270,24228456-24228583,24228671-24228824,24228905-24229014,24229112-24229195,24229302-24229350,24229464-24229555,24229706-24229832,24230029-24230114,24230186-24231534,24231628-24231738,24231820-24232394	AT5G60170.1  CDS  gene_syn F15L12.6, F15L12_6  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA binding / nucleic acid binding / nucleotide binding / protein binding / zinc ion binding  note RNA binding / nucleic acid binding / nucleotide binding / protein binding / zinc ion binding; FUNCTIONS IN: protein binding, RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), RNA recognition motif, RNP-1 (InterPro:IPR000504), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, region 1 (InterPro:IPR003954); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT3G45630.1); Has 1060 Blast hits to 628 proteins in 173 species: Archae - 0; Bacteria - 202; Metazoa - 240; Fungi - 159; Plants - 78; Viruses - 0; Other Eukaryotes - 381 (source: NCBI BLink).  protein_id AT5G60170.1p  transcript_id AT5G60170.1  protein_id AT5G60170.1p  transcript_id AT5G60170.1  
At5g60180	chr5:024233024	0.0	C/24233024-24234007	AT5G60180.1  CDS  gene_syn APUM19, Arabidopsis Pumilio 19, F15L12.7, F15L12_7  gene APUM19  go_function RNA binding|GO:0003723||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product APUM19 (Arabidopsis Pumilio 19); RNA binding / binding  note Arabidopsis Pumilio 19 (APUM19); FUNCTIONS IN: RNA binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding region (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: APUM18 (Arabidopsis Pumilio 18); RNA binding / binding (TAIR:AT5G60110.1); Has 1204 Blast hits to 886 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 266; Fungi - 275; Plants - 288; Viruses - 0; Other Eukaryotes - 375 (source: NCBI BLink).  protein_id AT5G60180.1p  transcript_id AT5G60180.1  protein_id AT5G60180.1p  transcript_id AT5G60180.1  
At5g60190	chr5:024235319	0.0	W/24235319-24235999	AT5G60190.1  CDS  gene_syn F15L12.8, F15L12_8  function Encodes a protein that can cleave residues from the C-terminus of RUB1 to prepare it for conjugation to target proteins.  go_process proteolysis|GO:0006508||IEA  go_component cellular_component|GO:0005575||ND  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  go_function NEDD8-specific protease activity|GO:0019784|16920872|IDA  product Ulp1 protease family protein  note Ulp1 protease family protein; FUNCTIONS IN: cysteine-type peptidase activity, NEDD8-specific protease activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); Has 601 Blast hits to 601 proteins in 116 species: Archae - 0; Bacteria - 14; Metazoa - 381; Fungi - 98; Plants - 46; Viruses - 3; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT5G60190.1p  transcript_id AT5G60190.1  protein_id AT5G60190.1p  transcript_id AT5G60190.1  
At5g60200	chr5:024241078	0.0	W/24241078-24241101,24241202-24241951	AT5G60200.1  CDS  gene_syn F15L12.10, F15L12_10  go_component nucleus|GO:0005634|16581911|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product Dof-type zinc finger domain-containing protein  note Dof-type zinc finger domain-containing protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT3G45610.1); Has 618 Blast hits to 614 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 613; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G60200.1p  transcript_id AT5G60200.1  protein_id AT5G60200.1p  transcript_id AT5G60200.1  
At5g60210	chr5:024245870	0.0	C/24245870-24245889,24245366-24245540,24243529-24245028	AT5G60210.1  CDS  gene_syn F15L12.15, F15L12_15  go_component plasma membrane|GO:0005886|17317660|IDA  product unknown protein  note LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT2G37080.1); Has 77946 Blast hits to 39215 proteins in 1793 species: Archae - 845; Bacteria - 8877; Metazoa - 39997; Fungi - 6049; Plants - 2988; Viruses - 248; Other Eukaryotes - 18942 (source: NCBI BLink).  protein_id AT5G60210.1p  transcript_id AT5G60210.1  protein_id AT5G60210.1p  transcript_id AT5G60210.1  
At5g60220	chr5:024248957	0.0	W/24248957-24249469,24249595-24250065	AT5G60220.1  CDS  gene_syn F15L12.11, F15L12_11, TET4, TETRASPANIN4  gene TET4  function Member of TETRASPANIN family  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process aging|GO:0007568||ISS  product TET4 (TETRASPANIN4)  note TETRASPANIN4 (TET4); INVOLVED IN: aging; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499), Tetraspanin, subgroup (InterPro:IPR000301); BEST Arabidopsis thaliana protein match is: TET3 (TETRASPANIN3) (TAIR:AT3G45600.1); Has 233 Blast hits to 233 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 0; Plants - 210; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G60220.1p  transcript_id AT5G60220.1  protein_id AT5G60220.1p  transcript_id AT5G60220.1  
At5g60230	chr5:024250185	0.0	C/24250185-24250937	AT5G60230.1  CDS  gene_syn ATSEN2, F15L12.18, F15L12_18, SEN2, SPLICING ENDONUCLEASE 2, splicing endonuclease 2  gene SEN2  function putative subunit of tRNA splicing endonuclease  go_component tRNA-intron endonuclease complex|GO:0000214||IEA  go_component tRNA-intron endonuclease complex|GO:0000214||ISS  go_process tRNA splicing, via endonucleolytic cleavage and ligation|GO:0006388|11080584|ISS  go_function tRNA-intron endonuclease activity|GO:0000213||ISS  go_function nuclease activity|GO:0004518|11080584|ISS  product SEN2 (splicing endonuclease 2); nuclease/ tRNA-intron endonuclease  note splicing endonuclease 2 (SEN2); FUNCTIONS IN: tRNA-intron endonuclease activity, nuclease activity; INVOLVED IN: tRNA splicing, via endonucleolytic cleavage and ligation; LOCATED IN: tRNA-intron endonuclease complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA-intron endonuclease (InterPro:IPR006676), tRNA intron endonuclease, catalytic domain-like (InterPro:IPR006677), Endonuclease TnsA, N-terminal/resolvase Hjc/tRNA endonuclease, C-terminal (InterPro:IPR011856), tRNA intron endonuclease, N-terminal domain-like (InterPro:IPR006678); BEST Arabidopsis thaliana protein match is: ATSEN1 (SPLICING ENDONUCLEASE 1); nuclease/ nucleic acid binding / tRNA-intron endonuclease (TAIR:AT3G45590.2); Has 304 Blast hits to 304 proteins in 129 species: Archae - 52; Bacteria - 0; Metazoa - 91; Fungi - 91; Plants - 45; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT5G60230.1p  transcript_id AT5G60230.1  protein_id AT5G60230.1p  transcript_id AT5G60230.1  
At5g60230	chr5:024250185	0.0	C/24250185-24250952	AT5G60230.2  CDS  gene_syn ATSEN2, F15L12.18, F15L12_18, SEN2, SPLICING ENDONUCLEASE 2, splicing endonuclease 2  gene SEN2  function putative subunit of tRNA splicing endonuclease  go_component tRNA-intron endonuclease complex|GO:0000214||IEA  go_component tRNA-intron endonuclease complex|GO:0000214||ISS  go_process tRNA splicing, via endonucleolytic cleavage and ligation|GO:0006388|11080584|ISS  go_function tRNA-intron endonuclease activity|GO:0000213||ISS  go_function nuclease activity|GO:0004518|11080584|ISS  product SEN2 (splicing endonuclease 2); nuclease/ tRNA-intron endonuclease  note splicing endonuclease 2 (SEN2); FUNCTIONS IN: tRNA-intron endonuclease activity, nuclease activity; INVOLVED IN: tRNA splicing, via endonucleolytic cleavage and ligation; LOCATED IN: tRNA-intron endonuclease complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA intron endonuclease, catalytic domain-like (InterPro:IPR006677), tRNA-intron endonuclease (InterPro:IPR006676), tRNA intron endonuclease, N-terminal domain-like (InterPro:IPR006678), Endonuclease TnsA, N-terminal/resolvase Hjc/tRNA endonuclease, C-terminal (InterPro:IPR011856); BEST Arabidopsis thaliana protein match is: ATSEN1 (SPLICING ENDONUCLEASE 1); nuclease/ nucleic acid binding / tRNA-intron endonuclease (TAIR:AT3G45590.2); Has 304 Blast hits to 304 proteins in 129 species: Archae - 52; Bacteria - 0; Metazoa - 91; Fungi - 91; Plants - 45; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT5G60230.2p  transcript_id AT5G60230.2  protein_id AT5G60230.2p  transcript_id AT5G60230.2  
At5g60240	chr5:024251382	0.0	W/24251382-24251436,24251522-24251628	AT5G60240.1  CDS  gene_syn F15L12.5, F15L12_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G60240.1p  transcript_id AT5G60240.1  protein_id AT5G60240.1p  transcript_id AT5G60240.1  
At5g60250	chr5:024252226	0.0	W/24252226-24252915,24253212-24253987,24254128-24254402,24254484-24254710	AT5G60250.1  CDS  gene_syn F15L12.13, F15L12_13  go_function nucleic acid binding|GO:0003676||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding, nucleic acid binding; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: zinc finger protein-related (TAIR:AT2G25370.1); Has 2297 Blast hits to 2282 proteins in 160 species: Archae - 0; Bacteria - 10; Metazoa - 1071; Fungi - 432; Plants - 394; Viruses - 0; Other Eukaryotes - 390 (source: NCBI BLink).  protein_id AT5G60250.1p  transcript_id AT5G60250.1  protein_id AT5G60250.1p  transcript_id AT5G60250.1  
At5g60260	chr5:024256248	0.0	C/24256248-24256285,24256095-24256180,24255583-24255777,24255434-24255483	AT5G60260.1  CDS  gene_syn F15L12.14, F15L12_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G60260.1p  transcript_id AT5G60260.1  protein_id AT5G60260.1p  transcript_id AT5G60260.1  
At5g60270	chr5:024257761	0.0	W/24257761-24259767	AT5G60270.1  CDS  gene_syn F15L12.9, F15L12_9  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product lectin protein kinase family protein  note lectin protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin protein kinase family protein (TAIR:AT3G45440.1); Has 81783 Blast hits to 80874 proteins in 3085 species: Archae - 48; Bacteria - 7339; Metazoa - 35543; Fungi - 6434; Plants - 18762; Viruses - 345; Other Eukaryotes - 13312 (source: NCBI BLink).  protein_id AT5G60270.1p  transcript_id AT5G60270.1  protein_id AT5G60270.1p  transcript_id AT5G60270.1  
At5g60280	chr5:024260563	0.0	W/24260563-24262536	AT5G60280.1  CDS  gene_syn F15L12.12, F15L12_12  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product lectin protein kinase family protein  note lectin protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin protein kinase family protein (TAIR:AT3G45440.1); Has 79022 Blast hits to 78225 proteins in 2913 species: Archae - 41; Bacteria - 7162; Metazoa - 34230; Fungi - 5992; Plants - 18502; Viruses - 345; Other Eukaryotes - 12750 (source: NCBI BLink).  protein_id AT5G60280.1p  transcript_id AT5G60280.1  protein_id AT5G60280.1p  transcript_id AT5G60280.1  
At5g60285	chr5:024262580	0.0	W/24262580-24262660	AT5G60285.1  tRNA  gene_syn 67892.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: AAG)  transcript_id AT5G60285.1  
At5g60290	chr5:024262864	0.0	W/24262864-24262911,24263186-24263382,24263550-24263642,24263720-24263843	AT5G60290.1  CDS  gene_syn F15L12.16, F15L12_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G60290.1p  transcript_id AT5G60290.1  protein_id AT5G60290.1p  transcript_id AT5G60290.1  
At5g60300	chr5:024264862	0.0	W/24264862-24267014,24267826-24267973	AT5G60300.3  CDS  gene_syn F15L12.17, F15L12_17  function Lectin Receptor Kinase involved in protein-protein interactions with RGD-containing proteins as potential ligands. Role in cell wall-plasma membrane adhesion.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|16361528|IDA  go_process focal adhesion formation|GO:0048041|16361528|IDA  go_function protein binding|GO:0005515|16361528|IDA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product lectin protein kinase family protein  note lectin protein kinase family protein; FUNCTIONS IN: carbohydrate binding, protein binding, kinase activity; INVOLVED IN: focal adhesion formation; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin protein kinase, putative (TAIR:AT5G60310.1); Has 80463 Blast hits to 79556 proteins in 2826 species: Archae - 38; Bacteria - 7104; Metazoa - 34700; Fungi - 6155; Plants - 19104; Viruses - 340; Other Eukaryotes - 13022 (source: NCBI BLink).  protein_id AT5G60300.3p  transcript_id AT5G60300.3  protein_id AT5G60300.3p  transcript_id AT5G60300.3  
At5g60300	chr5:024264862	0.0	W/24264862-24267018	AT5G60300.1  CDS  gene_syn F15L12.17, F15L12_17  function Lectin Receptor Kinase involved in protein-protein interactions with RGD-containing proteins as potential ligands. Role in cell wall-plasma membrane adhesion.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|16361528|IDA  go_process focal adhesion formation|GO:0048041|16361528|IDA  go_function protein binding|GO:0005515|16361528|IDA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product lectin protein kinase family protein  note lectin protein kinase family protein; FUNCTIONS IN: carbohydrate binding, protein binding, kinase activity; INVOLVED IN: focal adhesion formation; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin protein kinase, putative (TAIR:AT5G60310.1); Has 80487 Blast hits to 79580 proteins in 2842 species: Archae - 38; Bacteria - 7104; Metazoa - 34724; Fungi - 6153; Plants - 19109; Viruses - 340; Other Eukaryotes - 13019 (source: NCBI BLink).  protein_id AT5G60300.1p  transcript_id AT5G60300.1  protein_id AT5G60300.1p  transcript_id AT5G60300.1  
At5g60300	chr5:024264862	0.0	W/24264862-24267018	AT5G60300.2  CDS  gene_syn F15L12.17, F15L12_17  function Lectin Receptor Kinase involved in protein-protein interactions with RGD-containing proteins as potential ligands. Role in cell wall-plasma membrane adhesion.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|16361528|IDA  go_process focal adhesion formation|GO:0048041|16361528|IDA  go_function protein binding|GO:0005515|16361528|IDA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product lectin protein kinase family protein  note lectin protein kinase family protein; FUNCTIONS IN: carbohydrate binding, protein binding, kinase activity; INVOLVED IN: focal adhesion formation; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin protein kinase, putative (TAIR:AT5G60310.1); Has 80487 Blast hits to 79580 proteins in 2842 species: Archae - 38; Bacteria - 7104; Metazoa - 34724; Fungi - 6153; Plants - 19109; Viruses - 340; Other Eukaryotes - 13019 (source: NCBI BLink).  protein_id AT5G60300.2p  transcript_id AT5G60300.2  protein_id AT5G60300.2p  transcript_id AT5G60300.2  
At5g60310	chr5:024268011	0.0	W/24268011-24269679,24269801-24269982	AT5G60310.1  CDS  gene_syn F15L12.19, F15L12_19  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product lectin protein kinase, putative  note lectin protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin protein kinase family protein (TAIR:AT5G60300.3); Has 77380 Blast hits to 76601 proteins in 2712 species: Archae - 38; Bacteria - 6889; Metazoa - 33178; Fungi - 5802; Plants - 18620; Viruses - 309; Other Eukaryotes - 12544 (source: NCBI BLink).  protein_id AT5G60310.1p  transcript_id AT5G60310.1  protein_id AT5G60310.1p  transcript_id AT5G60310.1  
At5g60320	chr5:024270808	0.0	W/24270808-24272835	AT5G60320.1  CDS  gene_syn K9B18.1, K9B18_1  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product lectin protein kinase family protein  note lectin protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin protein kinase family protein (TAIR:AT3G45330.1); Has 84400 Blast hits to 83382 proteins in 3152 species: Archae - 46; Bacteria - 7739; Metazoa - 36521; Fungi - 6528; Plants - 19240; Viruses - 362; Other Eukaryotes - 13964 (source: NCBI BLink).  protein_id AT5G60320.1p  transcript_id AT5G60320.1  protein_id AT5G60320.1p  transcript_id AT5G60320.1  
At5g60330	chr5:024273521	0.0	C/24273521-24273634,24273128-24273427	AT5G60330.1  CDS  gene_syn K9B18.3, K9B18_3  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G45320.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G60330.1p  transcript_id AT5G60330.1  protein_id AT5G60330.1p  transcript_id AT5G60330.1  
At5g60340	chr5:024275682	0.0	C/24275682-24275891,24275367-24275512,24275169-24275316,24274282-24274560,24274078-24274193,24273879-24273993	AT5G60340.1  CDS  gene_syn K9B18.5, K9B18_5  go_component mitochondrion|GO:0005739||IEA  go_process metabolic process|GO:0008152||IEA  go_function ATP binding|GO:0005524||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process metabolic process|GO:0008152||ISS  go_function oxidoreductase activity|GO:0016491||ISS  product maoC-like dehydratase domain-containing protein  note maoC-like dehydratase domain-containing protein; FUNCTIONS IN: oxidoreductase activity, ATP binding; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), MaoC-like dehydratase (InterPro:IPR002539); Has 2118 Blast hits to 2114 proteins in 557 species: Archae - 78; Bacteria - 1116; Metazoa - 241; Fungi - 120; Plants - 34; Viruses - 0; Other Eukaryotes - 529 (source: NCBI BLink).  protein_id AT5G60340.1p  transcript_id AT5G60340.1  protein_id AT5G60340.1p  transcript_id AT5G60340.1  
At5g60350	chr5:024277872	0.0	W/24277872-24278523,24278638-24278861	AT5G60350.1  CDS  gene_syn K9B18.6, K9B18_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; Has 97 Blast hits to 84 proteins in 28 species: Archae - 0; Bacteria - 5; Metazoa - 36; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT5G60350.1p  transcript_id AT5G60350.1  protein_id AT5G60350.1p  transcript_id AT5G60350.1  
At5g60360	chr5:024280044	0.0	W/24280044-24280237,24280320-24280441,24280862-24280977,24281116-24281189,24281300-24281564,24281648-24281779,24281884-24282016,24282115-24282152	AT5G60360.2  CDS  gene_syn AALP, Arabidopsis aleurain-like protease, MUF9.4, MUF9_4, SAG2, SENESCENCE ASSOCIATED GENE2  gene AALP  function Encodes a senescence-associated thiol protease.  go_component vacuole|GO:0005773|15539469|IDA  go_process proteolysis|GO:0006508||ISS  go_process aging|GO:0007568|8518555|IEP  go_process response to ethylene stimulus|GO:0009723||IEP  go_function cysteine-type peptidase activity|GO:0008234|8518555|ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product AALP (Arabidopsis aleurain-like protease); cysteine-type peptidase  note Arabidopsis aleurain-like protease (AALP); FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: response to ethylene stimulus, proteolysis, aging; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: cysteine proteinase, putative (TAIR:AT3G45310.2); Has 6277 Blast hits to 6230 proteins in 616 species: Archae - 33; Bacteria - 153; Metazoa - 2858; Fungi - 8; Plants - 1217; Viruses - 126; Other Eukaryotes - 1882 (source: NCBI BLink).  protein_id AT5G60360.2p  transcript_id AT5G60360.2  protein_id AT5G60360.2p  transcript_id AT5G60360.2  
At5g60360	chr5:024280044	0.0	W/24280044-24280237,24280320-24280441,24280862-24280977,24281116-24281189,24281300-24281564,24281648-24281779,24281884-24282019,24282115-24282152	AT5G60360.1  CDS  gene_syn AALP, Arabidopsis aleurain-like protease, MUF9.4, MUF9_4, SAG2, SENESCENCE ASSOCIATED GENE2  gene AALP  function Encodes a senescence-associated thiol protease.  go_component vacuole|GO:0005773|15539469|IDA  go_process proteolysis|GO:0006508||ISS  go_process aging|GO:0007568|8518555|IEP  go_process response to ethylene stimulus|GO:0009723||IEP  go_function cysteine-type peptidase activity|GO:0008234|8518555|ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product AALP (Arabidopsis aleurain-like protease); cysteine-type peptidase  note Arabidopsis aleurain-like protease (AALP); FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: response to ethylene stimulus, proteolysis, aging; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain (InterPro:IPR013128), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: cysteine proteinase, putative (TAIR:AT3G45310.1); Has 6278 Blast hits to 6229 proteins in 616 species: Archae - 31; Bacteria - 153; Metazoa - 2862; Fungi - 8; Plants - 1216; Viruses - 126; Other Eukaryotes - 1882 (source: NCBI BLink).  protein_id AT5G60360.1p  transcript_id AT5G60360.1  protein_id AT5G60360.1p  transcript_id AT5G60360.1  
At5g60360	chr5:024280044	0.0	W/24280044-24280237,24280320-24280441,24280862-24280977,24281116-24281189,24281300-24281564,24281648-24281779,24281884-24282023,24282115-24282157	AT5G60360.3  CDS  gene_syn AALP, Arabidopsis aleurain-like protease, MUF9.4, MUF9_4, SAG2, SENESCENCE ASSOCIATED GENE2  gene AALP  function Encodes a senescence-associated thiol protease.  go_process proteolysis|GO:0006508||ISS  go_process aging|GO:0007568|8518555|IEP  go_process response to ethylene stimulus|GO:0009723||IEP  go_function cysteine-type peptidase activity|GO:0008234|8518555|ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product AALP (Arabidopsis aleurain-like protease); cysteine-type peptidase  note Arabidopsis aleurain-like protease (AALP); FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: response to ethylene stimulus, proteolysis, aging; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: cysteine proteinase, putative (TAIR:AT3G45310.1); Has 6274 Blast hits to 6235 proteins in 621 species: Archae - 33; Bacteria - 163; Metazoa - 2855; Fungi - 8; Plants - 1215; Viruses - 126; Other Eukaryotes - 1874 (source: NCBI BLink).  protein_id AT5G60360.3p  transcript_id AT5G60360.3  protein_id AT5G60360.3p  transcript_id AT5G60360.3  
At5g60370	chr5:024282858	0.0	W/24282858-24283235,24283325-24283429,24283544-24283665,24283801-24283956,24284059-24284212,24284343-24284419,24284511-24284760	AT5G60370.1  CDS  gene_syn MUF9.2, MUF9_2  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57110.1); Has 140 Blast hits to 138 proteins in 66 species: Archae - 4; Bacteria - 0; Metazoa - 46; Fungi - 48; Plants - 19; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT5G60370.1p  transcript_id AT5G60370.1  protein_id AT5G60370.1p  transcript_id AT5G60370.1  
At5g60380	chr5:024285920	0.0	W/24285920-24286027,24286189-24286275,24286370-24286558,24286629-24286787,24286877-24286930,24287007-24287138,24287416-24287808	AT5G60380.1  CDS  gene_syn MUF9.3, MUF9_3  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25410.1); Has 397 Blast hits to 377 proteins in 16 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 8; Plants - 385; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G60380.1p  transcript_id AT5G60380.1  protein_id AT5G60380.1p  transcript_id AT5G60380.1  
At5g60390	chr5:024289226	0.0	W/24289226-24289687,24289788-24290464,24290514-24290577	AT5G60390.2  CDS  gene_syn MUF9.8  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|14506206|IDA  go_process translational elongation|GO:0006414||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function translation elongation factor activity|GO:0003746||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  product elongation factor 1-alpha / EF-1-alpha  note elongation factor 1-alpha / EF-1-alpha; FUNCTIONS IN: calmodulin binding, translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: mitochondrion, nucleus, plasma membrane, vacuole, cytoplasm; EXPRESSED IN: cotyledon, male gametophyte, guard cell, pollen tube, seed; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EF1A, eukaryotic and archaeal (InterPro:IPR004539), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: elongation factor 1-alpha / EF-1-alpha (TAIR:AT1G07940.2); Has 56673 Blast hits to 56610 proteins in 13733 species: Archae - 656; Bacteria - 18819; Metazoa - 15457; Fungi - 8642; Plants - 1220; Viruses - 3; Other Eukaryotes - 11876 (source: NCBI BLink).  protein_id AT5G60390.2p  transcript_id AT5G60390.2  protein_id AT5G60390.2p  transcript_id AT5G60390.2  
At5g60390	chr5:024289226	0.0	W/24289226-24289687,24289788-24290675	AT5G60390.1  CDS  gene_syn MUF9.8  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|14506206|IDA  go_process translational elongation|GO:0006414||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function translation elongation factor activity|GO:0003746||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  product elongation factor 1-alpha / EF-1-alpha  note elongation factor 1-alpha / EF-1-alpha; FUNCTIONS IN: calmodulin binding, translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: mitochondrion, nucleus, plasma membrane, vacuole, cytoplasm; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000), Translation elongation factor EF1A, eukaryotic and archaeal (InterPro:IPR004539); BEST Arabidopsis thaliana protein match is: elongation factor 1-alpha / EF-1-alpha (TAIR:AT1G07940.2); Has 56847 Blast hits to 56774 proteins in 13741 species: Archae - 656; Bacteria - 18823; Metazoa - 15489; Fungi - 8699; Plants - 1228; Viruses - 3; Other Eukaryotes - 11949 (source: NCBI BLink).  protein_id AT5G60390.1p  transcript_id AT5G60390.1  protein_id AT5G60390.1p  transcript_id AT5G60390.1  
At5g60390	chr5:024289226	0.0	W/24289226-24289687,24289788-24290675	AT5G60390.3  CDS  gene_syn MUF9.8  go_process translational elongation|GO:0006414||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function translation elongation factor activity|GO:0003746||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  product elongation factor 1-alpha / EF-1-alpha  note elongation factor 1-alpha / EF-1-alpha; FUNCTIONS IN: calmodulin binding, translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: mitochondrion, nucleus, cytoplasm; EXPRESSED IN: cotyledon, male gametophyte, guard cell, pollen tube, seed; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000), Translation elongation factor EF1A, eukaryotic and archaeal (InterPro:IPR004539); BEST Arabidopsis thaliana protein match is: elongation factor 1-alpha / EF-1-alpha (TAIR:AT1G07940.2); Has 56847 Blast hits to 56774 proteins in 13741 species: Archae - 656; Bacteria - 18823; Metazoa - 15489; Fungi - 8699; Plants - 1228; Viruses - 3; Other Eukaryotes - 11949 (source: NCBI BLink).  protein_id AT5G60390.3p  transcript_id AT5G60390.3  protein_id AT5G60390.3p  transcript_id AT5G60390.3  
At5g60400	chr5:024291385	0.0	C/24291385-24291576	AT5G60400.1  CDS  gene_syn MUF9.14, MUF9_14  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G60400.1p  transcript_id AT5G60400.1  protein_id AT5G60400.1p  transcript_id AT5G60400.1  
At5g60400	chr5:024291385	0.0	C/24291385-24291576	AT5G60400.2  CDS  gene_syn MUF9.14, MUF9_14  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G60400.2p  transcript_id AT5G60400.2  protein_id AT5G60400.2p  transcript_id AT5G60400.2  
At5g60400	chr5:024291672	0.0	C/24291672-24291754,24291385-24291577	AT5G60400.3  CDS  gene_syn MUF9.14, MUF9_14  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 6 Blast hits to 6 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G60400.3p  transcript_id AT5G60400.3  protein_id AT5G60400.3p  transcript_id AT5G60400.3  
At5g60408	chr5:024293093	0.0	W/24293093-24293298	AT5G60408.1  miRNA  gene_syn MICRORNA391, MIR391  gene MIR391  function Encodes a microRNA of the miR390 family with unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUCGCAGGAGAGAUAGCGCCA  product MIR391 (MICRORNA391); miRNA  transcript_id AT5G60408.1  
At5g60410	chr5:024295226	0.0	W/24295226-24295249,24295518-24295598,24295818-24295860,24295970-24296042,24296137-24296299,24296464-24296594,24296902-24296970,24297214-24297301,24297381-24297456,24297668-24297741,24297871-24297978,24298462-24298623,24298728-24298832,24298916-24298996,24299080-24300283,24300532-24300626,24300753-24300830	AT5G60410.4  CDS  gene_syn AT5G60420, ATSIZ1, MUF9.5, MUF9_5, SIZ1  gene SIZ1  function Encodes a plant small ubiquitin-like modifier (SUMO) E3 ligase that is a focal controller of Pi starvation-dependent responses. Also required for SA and PAD4-mediated R gene signalling, which in turn confers innate immunity in Arabidopsis. Also involved in the regulation of plant growth, drought responses and freezing tolerance. This latter effect is most likely due to SIZ1 dependent ABI5 sumoylation.  go_component nucleus|GO:0005634|15894620|IDA  go_process response to water deprivation|GO:0009414|17905899|IMP  go_process regulation of abscisic acid mediated signaling|GO:0009787|19276109|IMP  go_process defense response signaling pathway, resistance gene-dependent|GO:0009870|17163880|IMP  go_process growth|GO:0040007|17905899|IMP  go_process response to freezing|GO:0050826|17416732|IMP  go_function DNA binding|GO:0003677||ISS  go_function SUMO ligase activity|GO:0019789|15894620|IDA  go_function SUMO ligase activity|GO:0019789|17905899|IMP  product SIZ1; DNA binding / SUMO ligase  note SIZ1; FUNCTIONS IN: SUMO ligase activity, DNA binding; INVOLVED IN: response to freezing, defense response signaling pathway, resistance gene-dependent, response to water deprivation, growth, regulation of abscisic acid mediated signaling; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MIZ-type (InterPro:IPR004181), DNA-binding SAP (InterPro:IPR003034), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT5G41580.1); Has 938 Blast hits to 937 proteins in 153 species: Archae - 0; Bacteria - 6; Metazoa - 571; Fungi - 156; Plants - 59; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).  protein_id AT5G60410.4p  transcript_id AT5G60410.4  protein_id AT5G60410.4p  transcript_id AT5G60410.4  
At5g60410	chr5:024295226	0.0	W/24295226-24295249,24295518-24295598,24295818-24295860,24295970-24296042,24296137-24296299,24296464-24296594,24296902-24296970,24297214-24297301,24297381-24297456,24297668-24297741,24297871-24297978,24298462-24298623,24298728-24298832,24298916-24298996,24299080-24300283,24300532-24300667,24300753-24300792	AT5G60410.2  CDS  gene_syn AT5G60420, ATSIZ1, MUF9.5, MUF9_5, SIZ1  gene SIZ1  function Encodes a plant small ubiquitin-like modifier (SUMO) E3 ligase that is a focal controller of Pi starvation-dependent responses. Also required for SA and PAD4-mediated R gene signalling, which in turn confers innate immunity in Arabidopsis. Also involved in the regulation of plant growth, drought responses and freezing tolerance. This latter effect is most likely due to SIZ1 dependent ABI5 sumoylation.  go_component nucleus|GO:0005634|15894620|IDA  go_process response to water deprivation|GO:0009414|17905899|IMP  go_process regulation of abscisic acid mediated signaling|GO:0009787|19276109|IMP  go_process defense response signaling pathway, resistance gene-dependent|GO:0009870|17163880|IMP  go_process growth|GO:0040007|17905899|IMP  go_process response to freezing|GO:0050826|17416732|IMP  go_function DNA binding|GO:0003677||ISS  go_function SUMO ligase activity|GO:0019789|15894620|IDA  go_function SUMO ligase activity|GO:0019789|17905899|IMP  product SIZ1; DNA binding / SUMO ligase  note SIZ1; FUNCTIONS IN: SUMO ligase activity, DNA binding; INVOLVED IN: response to freezing, defense response signaling pathway, resistance gene-dependent, response to water deprivation, growth, regulation of abscisic acid mediated signaling; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034), Zinc finger, MIZ-type (InterPro:IPR004181), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT5G41580.1); Has 933 Blast hits to 932 proteins in 153 species: Archae - 0; Bacteria - 6; Metazoa - 566; Fungi - 156; Plants - 59; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).  protein_id AT5G60410.2p  transcript_id AT5G60410.2  protein_id AT5G60410.2p  transcript_id AT5G60410.2  
At5g60410	chr5:024295226	0.0	W/24295226-24295249,24295518-24295598,24295818-24295860,24295970-24296042,24296137-24296299,24296464-24296594,24296902-24296970,24297214-24297301,24297381-24297456,24297668-24297741,24297871-24297978,24298462-24298623,24298728-24298832,24298916-24298996,24299080-24300283,24300532-24300667,24300753-24300792	AT5G60410.5  CDS  gene_syn AT5G60420, ATSIZ1, MUF9.5, MUF9_5, SIZ1  gene SIZ1  function Encodes a plant small ubiquitin-like modifier (SUMO) E3 ligase that is a focal controller of Pi starvation-dependent responses. Also required for SA and PAD4-mediated R gene signalling, which in turn confers innate immunity in Arabidopsis. Also involved in the regulation of plant growth, drought responses and freezing tolerance. This latter effect is most likely due to SIZ1 dependent ABI5 sumoylation.  go_component nucleus|GO:0005634|15894620|IDA  go_process response to water deprivation|GO:0009414|17905899|IMP  go_process regulation of abscisic acid mediated signaling|GO:0009787|19276109|IMP  go_process defense response signaling pathway, resistance gene-dependent|GO:0009870|17163880|IMP  go_process growth|GO:0040007|17905899|IMP  go_process response to freezing|GO:0050826|17416732|IMP  go_function DNA binding|GO:0003677||ISS  go_function SUMO ligase activity|GO:0019789|15894620|IDA  go_function SUMO ligase activity|GO:0019789|17905899|IMP  product SIZ1; DNA binding / SUMO ligase  note SIZ1; FUNCTIONS IN: SUMO ligase activity, DNA binding; INVOLVED IN: response to freezing, defense response signaling pathway, resistance gene-dependent, response to water deprivation, growth, regulation of abscisic acid mediated signaling; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034), Zinc finger, MIZ-type (InterPro:IPR004181), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT5G41580.1); Has 933 Blast hits to 932 proteins in 153 species: Archae - 0; Bacteria - 6; Metazoa - 566; Fungi - 156; Plants - 59; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).  protein_id AT5G60410.5p  transcript_id AT5G60410.5  protein_id AT5G60410.5p  transcript_id AT5G60410.5  
At5g60410	chr5:024295226	0.0	W/24295226-24295249,24295518-24295598,24295818-24295860,24295970-24296042,24296137-24296299,24296464-24296594,24296902-24296970,24297214-24297301,24297381-24297456,24297668-24297741,24297871-24297978,24298462-24298623,24298728-24298832,24298916-24298996,24299080-24300283,24300532-24300671	AT5G60410.1  CDS  gene_syn AT5G60420, ATSIZ1, MUF9.5, MUF9_5, SIZ1  gene SIZ1  function Encodes a plant small ubiquitin-like modifier (SUMO) E3 ligase that is a focal controller of Pi starvation-dependent responses. Also required for SA and PAD4-mediated R gene signalling, which in turn confers innate immunity in Arabidopsis. Also involved in the regulation of plant growth, drought responses and freezing tolerance. This latter effect is most likely due to SIZ1 dependent ABI5 sumoylation.  go_component nucleus|GO:0005634|15894620|IDA  go_process response to water deprivation|GO:0009414|17905899|IMP  go_process regulation of abscisic acid mediated signaling|GO:0009787|19276109|IMP  go_process defense response signaling pathway, resistance gene-dependent|GO:0009870|17163880|IMP  go_process growth|GO:0040007|17905899|IMP  go_process response to freezing|GO:0050826|17416732|IMP  go_function DNA binding|GO:0003677||ISS  go_function SUMO ligase activity|GO:0019789|15894620|IDA  go_function SUMO ligase activity|GO:0019789|17905899|IMP  product SIZ1; DNA binding / SUMO ligase  note SIZ1; FUNCTIONS IN: SUMO ligase activity, DNA binding; INVOLVED IN: response to freezing, defense response signaling pathway, resistance gene-dependent, response to water deprivation, growth, regulation of abscisic acid mediated signaling; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034), Zinc finger, MIZ-type (InterPro:IPR004181), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT5G41580.1); Has 933 Blast hits to 932 proteins in 153 species: Archae - 0; Bacteria - 6; Metazoa - 566; Fungi - 156; Plants - 59; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).  protein_id AT5G60410.1p  transcript_id AT5G60410.1  protein_id AT5G60410.1p  transcript_id AT5G60410.1  
At5g60410	chr5:024295226	0.0	W/24295226-24295249,24295518-24295598,24295818-24295860,24295970-24296042,24296137-24296299,24296464-24296594,24296902-24296970,24297214-24297301,24297381-24297456,24297668-24297741,24297871-24297978,24298462-24298623,24298728-24298832,24298916-24298996,24299080-24300300	AT5G60410.3  CDS  gene_syn AT5G60420, ATSIZ1, MUF9.5, MUF9_5, SIZ1  gene SIZ1  function Encodes a plant small ubiquitin-like modifier (SUMO) E3 ligase that is a focal controller of Pi starvation-dependent responses. Also required for SA and PAD4-mediated R gene signalling, which in turn confers innate immunity in Arabidopsis. Also involved in the regulation of plant growth, drought responses and freezing tolerance. This latter effect is most likely due to SIZ1 dependent ABI5 sumoylation.  go_component nucleus|GO:0005634|15894620|IDA  go_process response to water deprivation|GO:0009414|17905899|IMP  go_process regulation of abscisic acid mediated signaling|GO:0009787|19276109|IMP  go_process defense response signaling pathway, resistance gene-dependent|GO:0009870|17163880|IMP  go_process growth|GO:0040007|17905899|IMP  go_process response to freezing|GO:0050826|17416732|IMP  go_function DNA binding|GO:0003677||ISS  go_function SUMO ligase activity|GO:0019789|15894620|IDA  go_function SUMO ligase activity|GO:0019789|17905899|IMP  product SIZ1; DNA binding / SUMO ligase  note SIZ1; FUNCTIONS IN: SUMO ligase activity, DNA binding; INVOLVED IN: response to freezing, defense response signaling pathway, resistance gene-dependent, response to water deprivation, growth, regulation of abscisic acid mediated signaling; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034), Zinc finger, MIZ-type (InterPro:IPR004181), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT5G41580.1); Has 926 Blast hits to 925 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 565; Fungi - 156; Plants - 59; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).  protein_id AT5G60410.3p  transcript_id AT5G60410.3  protein_id AT5G60410.3p  transcript_id AT5G60410.3  
At5g60430	chr5:024302386	0.0	W/24302386-24302640,24302853-24303068	AT5G60430.1  CDS  gene_syn MUF9.6, MUF9_6  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  product antiporter/ drug transporter  note antiporter/ drug transporter; FUNCTIONS IN: drug transporter activity, antiporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: antiporter/ drug transporter (TAIR:AT2G16650.1); Has 52 Blast hits to 51 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G60430.1p  transcript_id AT5G60430.1  protein_id AT5G60430.1p  transcript_id AT5G60430.1  
At5g60430	chr5:024302386	0.0	W/24302386-24302640,24302853-24303068	AT5G60430.2  CDS  gene_syn MUF9.6, MUF9_6  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  product antiporter/ drug transporter  note antiporter/ drug transporter; FUNCTIONS IN: drug transporter activity, antiporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: antiporter/ drug transporter (TAIR:AT2G16650.1); Has 52 Blast hits to 51 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G60430.2p  transcript_id AT5G60430.2  protein_id AT5G60430.2p  transcript_id AT5G60430.2  
At5g60440	chr5:024306329	0.0	W/24306329-24306652,24306945-24307520	AT5G60440.1  CDS  gene_syn AGL62, Agamous-like 62, MUF9.24, MUF9_24  gene AGL62  function AGL62 encodes a Type I MADS domain protein that likely functions as a transcription factor. It is expressed AGL62 is expressed exclusively in the endosperm. AGL62 supresses suppresses cellularization during the syncytial phase of endosperm development.  go_component nucleus|GO:0005634||IEA  go_process endosperm development|GO:0009960|18334668|IMP  go_process cellularization of endosperm|GO:0010342|18334668|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700|18334668|ISS  product AGL62 (Agamous-like 62); DNA binding / transcription factor  note Agamous-like 62 (AGL62); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: cellularization of endosperm, endosperm development; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: MADS-box protein (AGL40) (TAIR:AT4G36590.1); Has 4119 Blast hits to 4118 proteins in 544 species: Archae - 0; Bacteria - 0; Metazoa - 549; Fungi - 208; Plants - 3299; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT5G60440.1p  transcript_id AT5G60440.1  protein_id AT5G60440.1p  transcript_id AT5G60440.1  
At5g60450	chr5:024311813	0.0	C/24311813-24312187,24311614-24311670,24311166-24311351,24310983-24311067,24310809-24310899,24310524-24310685,24310307-24310426,24310149-24310224,24309884-24310049,24309094-24309782,24308809-24308999,24308558-24308726	AT5G60450.1  CDS  gene_syn ARF4, AUXIN RESPONSE FACTOR 4, MUF9.7, MUF9_7  gene ARF4  function Encodes a member of the ARF family of transcription factors which mediate auxin responses. ARF4 appears to have redundant function with ETT(ARF3) in specifying abaxial cell identity.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process vegetative phase change|GO:0010050|16818444|IGI  go_process abaxial cell fate specification|GO:0010158|16199616|IGI  go_function transcription factor activity|GO:0003700|11118137|ISS  product ARF4 (AUXIN RESPONSE FACTOR 4); transcription factor  note AUXIN RESPONSE FACTOR 4 (ARF4); FUNCTIONS IN: transcription factor activity; INVOLVED IN: vegetative phase change, abaxial cell fate specification, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: ETT (ETTIN); DNA binding / transcription factor (TAIR:AT2G33860.1); Has 1293 Blast hits to 1024 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 1; Plants - 1276; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G60450.1p  transcript_id AT5G60450.1  protein_id AT5G60450.1p  transcript_id AT5G60450.1  
At5g60460	chr5:024317590	0.0	C/24317590-24317919	AT5G60460.1  CDS  gene_syn MUF9.9, MUF9_9  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein transport|GO:0015031||ISS  go_function protein transporter activity|GO:0008565||ISS  product sec61beta family protein  note sec61beta family protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Preprotein translocase Sec, Sec61-beta subunit, eukarya (InterPro:IPR016482), Preprotein translocase Sec, Sec61-beta subunit (InterPro:IPR005609); BEST Arabidopsis thaliana protein match is: sec61beta family protein (TAIR:AT3G60540.2); Has 295 Blast hits to 295 proteins in 111 species: Archae - 0; Bacteria - 2; Metazoa - 113; Fungi - 83; Plants - 69; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT5G60460.1p  transcript_id AT5G60460.1  protein_id AT5G60460.1p  transcript_id AT5G60460.1  
At5g60470	chr5:024320614	0.0	W/24320614-24320746,24320929-24321328,24321971-24322790	AT5G60470.1  CDS  gene_syn MUF9.10, MUF9_10  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product nucleic acid binding / transcription factor/ zinc ion binding  note nucleic acid binding / transcription factor/ zinc ion binding; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: stem, sepal, carpel, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT3G45260.1); Has 35623 Blast hits to 14256 proteins in 175 species: Archae - 0; Bacteria - 0; Metazoa - 34087; Fungi - 150; Plants - 379; Viruses - 0; Other Eukaryotes - 1007 (source: NCBI BLink).  protein_id AT5G60470.1p  transcript_id AT5G60470.1  protein_id AT5G60470.1p  transcript_id AT5G60470.1  
At5g60480	chr5:024323594	0.0	W/24323594-24324169	AT5G60480.1  CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 26, AtHB26, MUF9.11, MUF9_11  gene AtHB26  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677|16428600|ISS  go_function transcription factor activity|GO:0003700||ISS  product AtHB26 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 26); DNA binding / transcription factor  note ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 26 (AtHB26); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein Cys/His-rich dimerisation region (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ZFHD1 (ZINC FINGER HOMEODOMAIN 1); DNA binding / transcription activator/ transcription factor (TAIR:AT1G69600.1); Has 268 Blast hits to 249 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 268; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G60480.1p  transcript_id AT5G60480.1  protein_id AT5G60480.1p  transcript_id AT5G60480.1  
At5g60490	chr5:024325916	0.0	C/24325916-24326665	AT5G60490.1  CDS  gene_syn FLA12, MUF9.12, MUF9_12  gene FLA12  go_component plasma membrane|GO:0005886|17644812|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  product FLA12  note FLA12; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FLA11 (TAIR:AT5G03170.1); Has 973 Blast hits to 947 proteins in 200 species: Archae - 18; Bacteria - 347; Metazoa - 21; Fungi - 12; Plants - 475; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).  protein_id AT5G60490.1p  transcript_id AT5G60490.1  protein_id AT5G60490.1p  transcript_id AT5G60490.1  
At5g60500	chr5:024328815	0.0	W/24328815-24329630	AT5G60500.1  CDS  gene_syn MUF9.18, MUF9_18  go_function transferase activity, transferring alkyl or aryl (other than methyl) groups|GO:0016765||IEA  product undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein  note undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein; FUNCTIONS IN: transferase activity, transferring alkyl or aryl (other than methyl) groups; CONTAINS InterPro DOMAIN/s: Di-trans-poly-cis-decaprenylcistransferase-like, conserved site (InterPro:IPR018520), Di-trans-poly-cis-decaprenylcistransferase-like (InterPro:IPR001441); BEST Arabidopsis thaliana protein match is: undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein (TAIR:AT5G60510.1); Has 6087 Blast hits to 6055 proteins in 1541 species: Archae - 152; Bacteria - 2793; Metazoa - 157; Fungi - 162; Plants - 120; Viruses - 0; Other Eukaryotes - 2703 (source: NCBI BLink).  protein_id AT5G60500.1p  transcript_id AT5G60500.1  protein_id AT5G60500.1p  transcript_id AT5G60500.1  
At5g60510	chr5:024330721	0.0	W/24330721-24331539	AT5G60510.1  CDS  gene_syn MUF9.22, MUF9_22  go_function transferase activity, transferring alkyl or aryl (other than methyl) groups|GO:0016765||IEA  product undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein  note undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein; FUNCTIONS IN: transferase activity, transferring alkyl or aryl (other than methyl) groups; CONTAINS InterPro DOMAIN/s: Di-trans-poly-cis-decaprenylcistransferase-like, conserved site (InterPro:IPR018520), Di-trans-poly-cis-decaprenylcistransferase-like (InterPro:IPR001441); BEST Arabidopsis thaliana protein match is: undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein (TAIR:AT5G60500.1); Has 6122 Blast hits to 6086 proteins in 1541 species: Archae - 150; Bacteria - 2798; Metazoa - 157; Fungi - 164; Plants - 120; Viruses - 0; Other Eukaryotes - 2733 (source: NCBI BLink).  protein_id AT5G60510.1p  transcript_id AT5G60510.1  protein_id AT5G60510.1p  transcript_id AT5G60510.1  
At5g60520	chr5:024332656	0.0	C/24332656-24332947,24331787-24332511	AT5G60520.1  CDS  gene_syn MUF9.15, MUF9_15  go_component endomembrane system|GO:0012505||IEA  go_function molecular_function|GO:0003674||ND  product late embryogenesis abundant protein-related / LEA protein-related  note late embryogenesis abundant protein-related / LEA protein-related; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Root cap (InterPro:IPR009646); BEST Arabidopsis thaliana protein match is: late embryogenesis abundant protein-related / LEA protein-related (TAIR:AT5G60530.1); Has 116 Blast hits to 116 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 116; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G60520.1p  transcript_id AT5G60520.1  protein_id AT5G60520.1p  transcript_id AT5G60520.1  
At5g60530	chr5:024335094	0.0	C/24335094-24335685,24334197-24334924	AT5G60530.1  CDS  gene_syn MUF9.16, MUF9_16  go_component endomembrane system|GO:0012505||IEA  go_function molecular_function|GO:0003674||ND  product late embryogenesis abundant protein-related / LEA protein-related  note late embryogenesis abundant protein-related / LEA protein-related; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Root cap (InterPro:IPR009646); BEST Arabidopsis thaliana protein match is: late embryogenesis abundant protein-related / LEA protein-related (TAIR:AT5G60520.1); Has 109389 Blast hits to 34948 proteins in 1564 species: Archae - 282; Bacteria - 7795; Metazoa - 46850; Fungi - 10024; Plants - 3744; Viruses - 760; Other Eukaryotes - 39934 (source: NCBI BLink).  protein_id AT5G60530.1p  transcript_id AT5G60530.1  protein_id AT5G60530.1p  transcript_id AT5G60530.1  
At5g60540	chr5:024338468	0.0	C/24338468-24338647,24337887-24337974,24337746-24337819,24337301-24337492,24337103-24337200,24336874-24337009	AT5G60540.1  CDS  gene_syn ATPDX2, EMB2407, EMBRYO DEFECTIVE 2407, MUF9.1, MUF9_1, PDX2, PYRIDOXINE BIOSYNTHESIS 2  gene PDX2  function Encodes a protein predicted to function in tandem with PDX1 to form glutamine amidotransferase complex with involved in vitamin B6 biosynthesis. PDX2 is predicted to function as glutaminase within the complex.  go_component cytosol|GO:0005829|16157873|IDA  go_process pyridoxine biosynthetic process|GO:0008615||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process vitamin B6 biosynthetic process|GO:0042819|16157873|IGI  go_process vitamin B6 biosynthetic process|GO:0042819|16157873|IMP  go_function glutaminase activity|GO:0004359|16157873|ISS  go_function glutaminase activity|GO:0004359|17468224|IDA  go_function protein heterodimerization activity|GO:0046982|16766694|IPI  go_function glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity|GO:0050567||ISS  product PDX2 (PYRIDOXINE BIOSYNTHESIS 2); glutaminase/ glutaminyl-tRNA synthase (glutamine-hydrolyzing)/ protein heterodimerization  note PYRIDOXINE BIOSYNTHESIS 2 (PDX2); FUNCTIONS IN: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity, glutaminase activity, protein heterodimerization activity; INVOLVED IN: embryonic development ending in seed dormancy, pyridoxine biosynthetic process, vitamin B6 biosynthetic process; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SNO glutamine amidotransferase (InterPro:IPR002161); Has 1504 Blast hits to 1502 proteins in 486 species: Archae - 160; Bacteria - 756; Metazoa - 7; Fungi - 102; Plants - 32; Viruses - 0; Other Eukaryotes - 447 (source: NCBI BLink).  protein_id AT5G60540.1p  transcript_id AT5G60540.1  protein_id AT5G60540.1p  transcript_id AT5G60540.1  
At5g60548	chr5:024339842	0.0	W/24339842-24339919	AT5G60548.1  CDS  gene_syn CPuORF62, Conserved peptide upstream open reading frame 62  gene CPuORF62  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF62 represents a conserved upstream opening reading frame relative to major ORF AT5G60550.1  product CPuORF62 (Conserved peptide upstream open reading frame 62)  note Conserved peptide upstream open reading frame 62 (CPuORF62); BEST Arabidopsis thaliana protein match is: CPuORF61 (Conserved peptide upstream open reading frame 61) (TAIR:AT3G45242.1); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G60548.1p  transcript_id AT5G60548.1  protein_id AT5G60548.1p  transcript_id AT5G60548.1  
At5g60550	chr5:024340135	0.0	W/24340135-24340422,24340516-24340590,24340698-24340742,24340887-24340961,24341055-24341142,24341240-24341364,24341455-24341550,24341642-24341708,24341799-24341920,24342019-24342097,24342193-24342356	AT5G60550.1  CDS  gene_syn ATSNAK1, GEMINIVIRUS REP INTERACTING KINASE 2, GRIK2, MUF9.13, MUF9_13  gene GRIK2  function Encodes a geminivirus Rep interacting kinase (GRIK; GRIK1/AT3G45240, GRIK2/AT5G60550). GRIKs are SnRK1 (SNF1-related kinases) activating kinases. Both GRIKs specifically bind to the SnRK1 catalytic subunit and phosphorylate the equivalent threonine residue in its activation loop in vitro.  go_process protein amino acid phosphorylation|GO:0006468|17237223|IDA  go_process protein amino acid phosphorylation|GO:0006468|19339507|IDA  go_function kinase activity|GO:0016301|17237223|IDA  go_function kinase activity|GO:0016301|19339507|IDA  go_function kinase activity|GO:0016301||ISS  product GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2); kinase  note GEMINIVIRUS REP INTERACTING KINASE 2 (GRIK2); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1); kinase (TAIR:AT3G45240.2); Has 85737 Blast hits to 84307 proteins in 3329 species: Archae - 57; Bacteria - 7995; Metazoa - 37187; Fungi - 8071; Plants - 15852; Viruses - 420; Other Eukaryotes - 16155 (source: NCBI BLink).  protein_id AT5G60550.1p  transcript_id AT5G60550.1  protein_id AT5G60550.1p  transcript_id AT5G60550.1  
At5g60553	chr5:024343205	0.0	W/24343205-24343444	AT5G60553.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G60553.1p  transcript_id AT5G60553.1  protein_id AT5G60553.1p  transcript_id AT5G60553.1  
At5g60560	chr5:024345949	0.0	W/24345949-24346994,24347094-24347172	AT5G60560.1  CDS  gene_syn MUF9.19, MUF9_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G20030.1); Has 509 Blast hits to 486 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 507; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G60560.1p  transcript_id AT5G60560.1  protein_id AT5G60560.1p  transcript_id AT5G60560.1  
At5g60570	chr5:024348713	0.0	W/24348713-24349894	AT5G60570.1  CDS  gene_syn MUF9.20, MUF9_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT1G26930.1); Has 4012 Blast hits to 2724 proteins in 155 species: Archae - 4; Bacteria - 148; Metazoa - 3006; Fungi - 4; Plants - 645; Viruses - 26; Other Eukaryotes - 179 (source: NCBI BLink).  protein_id AT5G60570.1p  transcript_id AT5G60570.1  protein_id AT5G60570.1p  transcript_id AT5G60570.1  
At5g60580	chr5:024354298	0.0	W/24354298-24354369,24354672-24355160,24355229-24355388,24355483-24355765,24355893-24355965,24356053-24356143,24356205-24356305,24356491-24356706	AT5G60580.2  CDS  gene_syn MUF9.21, MUF9_21  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G09760.1); Has 1155 Blast hits to 811 proteins in 109 species: Archae - 0; Bacteria - 8; Metazoa - 360; Fungi - 74; Plants - 320; Viruses - 16; Other Eukaryotes - 377 (source: NCBI BLink).  protein_id AT5G60580.2p  transcript_id AT5G60580.2  protein_id AT5G60580.2p  transcript_id AT5G60580.2  
At5g60580	chr5:024354298	0.0	W/24354298-24354369,24354672-24355160,24355229-24355388,24355483-24355765,24355893-24355965,24356053-24356143,24356205-24356305,24356491-24356706	AT5G60580.4  CDS  gene_syn MUF9.21, MUF9_21  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G09760.1); Has 1155 Blast hits to 811 proteins in 109 species: Archae - 0; Bacteria - 8; Metazoa - 360; Fungi - 74; Plants - 320; Viruses - 16; Other Eukaryotes - 377 (source: NCBI BLink).  protein_id AT5G60580.4p  transcript_id AT5G60580.4  protein_id AT5G60580.4p  transcript_id AT5G60580.4  
At5g60580	chr5:024354298	0.0	W/24354298-24354369,24354672-24355160,24355229-24355388,24355483-24355765,24355893-24355965,24356053-24356143,24356226-24356305,24356491-24356706	AT5G60580.1  CDS  gene_syn MUF9.21, MUF9_21  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G09760.1); Has 1155 Blast hits to 811 proteins in 109 species: Archae - 0; Bacteria - 8; Metazoa - 360; Fungi - 74; Plants - 320; Viruses - 16; Other Eukaryotes - 377 (source: NCBI BLink).  protein_id AT5G60580.1p  transcript_id AT5G60580.1  protein_id AT5G60580.1p  transcript_id AT5G60580.1  
At5g60580	chr5:024354298	0.0	W/24354298-24354369,24354672-24355160,24355229-24355388,24355483-24355765,24355893-24355965,24356053-24356143,24356226-24356305,24356491-24356706	AT5G60580.3  CDS  gene_syn MUF9.21, MUF9_21  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G09760.1); Has 1155 Blast hits to 811 proteins in 109 species: Archae - 0; Bacteria - 8; Metazoa - 360; Fungi - 74; Plants - 320; Viruses - 16; Other Eukaryotes - 377 (source: NCBI BLink).  protein_id AT5G60580.3p  transcript_id AT5G60580.3  protein_id AT5G60580.3p  transcript_id AT5G60580.3  
At5g60590	chr5:024357066	0.0	W/24357066-24357141,24357386-24357620,24357703-24357878,24357945-24357952	AT5G60590.1  CDS  gene_syn MUP24.1  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product yrdC protein-related  note yrdC protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DHBP synthase RibB-like alpha/beta domain (InterPro:IPR017945), Sua5/YciO/YrdC, N-terminal (InterPro:IPR006070); Has 3716 Blast hits to 3716 proteins in 1106 species: Archae - 120; Bacteria - 2008; Metazoa - 98; Fungi - 64; Plants - 36; Viruses - 0; Other Eukaryotes - 1390 (source: NCBI BLink).  protein_id AT5G60590.1p  transcript_id AT5G60590.1  protein_id AT5G60590.1p  transcript_id AT5G60590.1  
At5g60590	chr5:024357066	0.0	W/24357066-24357141,24357386-24357620,24357703-24357878,24357957-24358248,24358356-24358443	AT5G60590.2  CDS  gene_syn MUP24.1  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product yrdC protein-related  note yrdC protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sua5/YciO/YrdC/YwlC (InterPro:IPR004388), DHBP synthase RibB-like alpha/beta domain (InterPro:IPR017945), Sua5/YciO/YrdC, N-terminal (InterPro:IPR006070); BEST Arabidopsis thaliana protein match is: yrdC family protein (TAIR:AT3G01920.1); Has 5651 Blast hits to 5650 proteins in 1402 species: Archae - 124; Bacteria - 3268; Metazoa - 130; Fungi - 89; Plants - 38; Viruses - 0; Other Eukaryotes - 2002 (source: NCBI BLink).  protein_id AT5G60590.2p  transcript_id AT5G60590.2  protein_id AT5G60590.2p  transcript_id AT5G60590.2  
At5g60600	chr5:024359447	0.0	W/24359447-24359654,24359740-24359897,24360028-24360134,24360231-24360331,24360406-24360482,24360570-24360689,24360769-24360999,24361076-24361189,24361269-24361343,24361430-24361507,24361619-24361678,24361778-24361840,24361923-24362067,24362149-24362287,24362381-24362458,24362546-24362705,24362783-24362881,24362967-24363071,24363170-24363274	AT5G60600.2  CDS  gene_syn 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE, CHLOROPLAST BIOGENESIS 4, CLB4, CONSTITUTIVE SUBTILISIN 3, CSB3, GCPE, HDS, ISPG, MUP24.15, MUP24_15  gene HDS  function Encodes a chloroplast-localized hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) synthase (HDS), catalyzes the formation of HMBPP from 2-C-methyl-D-erythrytol 2,4-cyclodiphosphate (MEcPP). The HDS enzyme controls the penultimate steps of the biosynthesis of IPP and dimethylallyl diphosphate (DMAPP) via the MEP pathway and may serve as a metabolic control point for SA-mediated disease resistance. In the light, the electrons required for the reaction catalyzed by HDS are directly provided by the electron flow from photosynthesis via ferredoxin. In the dark however, the enzyme requires an electron shuttle: ferredoxin-NADP<sup>+</sup> reductase.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast|GO:0009507|11943178|IDA  go_process isoprenoid biosynthetic process|GO:0008299||ISS  go_process response to light stimulus|GO:0009416|15863698|IEP  go_process response to bacterium|GO:0009617|16167903|IMP  go_process systemic acquired resistance, salicylic acid mediated signaling pathway|GO:0009862|16167903|IMP  go_process isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway|GO:0019288|15650872|TAS  go_function 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity|GO:0046429|11943178|IGI  go_function 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity|GO:0046429|15650872|IDA  go_function 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity|GO:0046429||ISS  go_function 4 iron, 4 sulfur cluster binding|GO:0051539|15650872|IDA  product HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE); 4 iron, 4 sulfur cluster binding / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase  note 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE (HDS); FUNCTIONS IN: 4 iron, 4 sulfur cluster binding, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity; INVOLVED IN: response to light stimulus, isoprenoid biosynthetic process, isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, response to bacterium, systemic acquired resistance, salicylic acid mediated signaling pathway; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dihydropteroate synthase-like (InterPro:IPR011005), 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, atypical (InterPro:IPR017178), 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type (InterPro:IPR004588); Has 8979 Blast hits to 5446 proteins in 1167 species: Archae - 0; Bacteria - 4459; Metazoa - 2; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 4471 (source: NCBI BLink).  protein_id AT5G60600.2p  transcript_id AT5G60600.2  protein_id AT5G60600.2p  transcript_id AT5G60600.2  
At5g60600	chr5:024359447	0.0	W/24359447-24359654,24359740-24359897,24360028-24360134,24360231-24360331,24360406-24360482,24360570-24360689,24360769-24360999,24361076-24361192,24361269-24361343,24361430-24361507,24361619-24361678,24361778-24361840,24361923-24362067,24362149-24362287,24362381-24362458,24362546-24362705,24362783-24362881,24362967-24363071,24363170-24363274	AT5G60600.1  CDS  gene_syn 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE, CHLOROPLAST BIOGENESIS 4, CLB4, CONSTITUTIVE SUBTILISIN 3, CSB3, GCPE, HDS, ISPG, MUP24.15, MUP24_15  gene HDS  function Encodes a chloroplast-localized hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) synthase (HDS), catalyzes the formation of HMBPP from 2-C-methyl-D-erythrytol 2,4-cyclodiphosphate (MEcPP). The HDS enzyme controls the penultimate steps of the biosynthesis of IPP and dimethylallyl diphosphate (DMAPP) via the MEP pathway and may serve as a metabolic control point for SA-mediated disease resistance. In the light, the electrons required for the reaction catalyzed by HDS are directly provided by the electron flow from photosynthesis via ferredoxin. In the dark however, the enzyme requires an electron shuttle: ferredoxin-NADP<sup>+</sup> reductase.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast|GO:0009507|11943178|IDA  go_process isoprenoid biosynthetic process|GO:0008299||ISS  go_process response to light stimulus|GO:0009416|15863698|IEP  go_process response to bacterium|GO:0009617|16167903|IMP  go_process systemic acquired resistance, salicylic acid mediated signaling pathway|GO:0009862|16167903|IMP  go_process isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway|GO:0019288|15650872|TAS  go_function 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity|GO:0046429|11943178|IGI  go_function 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity|GO:0046429|15650872|IDA  go_function 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity|GO:0046429||ISS  go_function 4 iron, 4 sulfur cluster binding|GO:0051539|15650872|IDA  product HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE); 4 iron, 4 sulfur cluster binding / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase  note 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE (HDS); FUNCTIONS IN: 4 iron, 4 sulfur cluster binding, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity; INVOLVED IN: response to light stimulus, isoprenoid biosynthetic process, isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, response to bacterium, systemic acquired resistance, salicylic acid mediated signaling pathway; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dihydropteroate synthase-like (InterPro:IPR011005), 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, atypical (InterPro:IPR017178), 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type (InterPro:IPR004588); Has 8987 Blast hits to 5446 proteins in 1167 species: Archae - 0; Bacteria - 4465; Metazoa - 2; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 4473 (source: NCBI BLink).  protein_id AT5G60600.1p  transcript_id AT5G60600.1  protein_id AT5G60600.1p  transcript_id AT5G60600.1  
At5g60600	chr5:024359447	0.0	W/24359447-24359654,24359740-24359897,24360028-24360134,24360231-24360331,24360406-24360482,24360570-24360689,24360769-24360999,24361076-24361192,24361269-24361343,24361430-24361507,24361619-24361678,24361778-24361840,24361923-24362067,24362149-24362287,24362381-24362458,24362546-24362705,24362783-24363019	AT5G60600.3  CDS  gene_syn 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE, CHLOROPLAST BIOGENESIS 4, CLB4, CONSTITUTIVE SUBTILISIN 3, CSB3, GCPE, HDS, ISPG, MUP24.15, MUP24_15  gene HDS  function Encodes a chloroplast-localized hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) synthase (HDS), catalyzes the formation of HMBPP from 2-C-methyl-D-erythrytol 2,4-cyclodiphosphate (MEcPP). The HDS enzyme controls the penultimate steps of the biosynthesis of IPP and dimethylallyl diphosphate (DMAPP) via the MEP pathway and may serve as a metabolic control point for SA-mediated disease resistance. In the light, the electrons required for the reaction catalyzed by HDS are directly provided by the electron flow from photosynthesis via ferredoxin. In the dark however, the enzyme requires an electron shuttle: ferredoxin-NADP<sup>+</sup> reductase.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|11943178|IDA  go_process isoprenoid biosynthetic process|GO:0008299||ISS  go_process response to light stimulus|GO:0009416|15863698|IEP  go_process response to bacterium|GO:0009617|16167903|IMP  go_process systemic acquired resistance, salicylic acid mediated signaling pathway|GO:0009862|16167903|IMP  go_process isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway|GO:0019288|15650872|TAS  go_function 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity|GO:0046429|11943178|IGI  go_function 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity|GO:0046429|15650872|IDA  go_function 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity|GO:0046429||ISS  go_function 4 iron, 4 sulfur cluster binding|GO:0051539|15650872|IDA  product HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE); 4 iron, 4 sulfur cluster binding / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase  note 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE (HDS); FUNCTIONS IN: 4 iron, 4 sulfur cluster binding, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity; INVOLVED IN: response to light stimulus, isoprenoid biosynthetic process, isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, response to bacterium, systemic acquired resistance, salicylic acid mediated signaling pathway; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dihydropteroate synthase-like (InterPro:IPR011005), 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, atypical (InterPro:IPR017178), 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type (InterPro:IPR004588); Has 6231 Blast hits to 5141 proteins in 1168 species: Archae - 0; Bacteria - 2722; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 3463 (source: NCBI BLink).  protein_id AT5G60600.3p  transcript_id AT5G60600.3  protein_id AT5G60600.3p  transcript_id AT5G60600.3  
At5g60610	chr5:024364049	0.0	W/24364049-24364882,24364963-24365100,24365192-24365386	AT5G60610.1  CDS  gene_syn MUP24.3, MUP24_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G26860.1); Has 1374 Blast hits to 1339 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1374; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G60610.1p  transcript_id AT5G60610.1  protein_id AT5G60610.1p  transcript_id AT5G60610.1  
At5g60615	chr5:024366241	0.0	C/24366241-24366319,24365953-24366113	AT5G60615.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G60615.1p  transcript_id AT5G60615.1  protein_id AT5G60615.1p  transcript_id AT5G60615.1  
At5g60620	chr5:024367266	0.0	W/24367266-24367387,24367476-24367533,24367661-24367779,24367889-24367988,24368100-24368195,24368271-24368367,24368522-24368609,24368692-24368788,24368865-24368950,24369084-24369203,24369286-24369384,24369599-24369647	AT5G60620.1  CDS  gene_syn MUP24.4, MUP24_4  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function acyltransferase activity|GO:0008415||IEA  go_process diacylglycerol biosynthetic process|GO:0006651|16449762|ISS  go_process metabolic process|GO:0008152||ISS  go_process triglyceride biosynthetic process|GO:0019432|16449762|ISS  go_function acyltransferase activity|GO:0008415||ISS  product phospholipid/glycerol acyltransferase family protein  note phospholipid/glycerol acyltransferase family protein; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: triglyceride biosynthetic process, diacylglycerol biosynthetic process, metabolic process; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: phospholipid/glycerol acyltransferase family protein (TAIR:AT1G80950.1); Has 820 Blast hits to 786 proteins in 139 species: Archae - 0; Bacteria - 81; Metazoa - 535; Fungi - 2; Plants - 72; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink).  protein_id AT5G60620.1p  transcript_id AT5G60620.1  protein_id AT5G60620.1p  transcript_id AT5G60620.1  
At5g60630	chr5:024369923	0.0	C/24369923-24370342	AT5G60630.1  CDS  gene_syn MUP24.5, MUP24_5  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; Has 22 Blast hits to 22 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G60630.1p  transcript_id AT5G60630.1  protein_id AT5G60630.1p  transcript_id AT5G60630.1  
At5g60640	chr5:024373407	0.0	C/24373407-24373993,24373191-24373320,24372937-24373102,24372730-24372848,24372555-24372635,24372325-24372411,24372132-24372206,24371960-24372028,24371802-24371882,24371575-24371709,24371416-24371496	AT5G60640.2  CDS  gene_syn ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, ATPDI2, ATPDIL1-4, MUP24.6, MUP24_6, PDI-LIKE 1-4, PDI2, PROTEIN DISULFIDE ISOMERASE 2  gene ATPDIL1-4  function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). However, the level of transcripts for this gene is slightly elevated in atbzip60 mutants.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process response to oxidative stress|GO:0006979|12492832|IDA  go_function protein disulfide isomerase activity|GO:0003756|18574595|ISS  product ATPDIL1-4 (PDI-LIKE 1-4); protein disulfide isomerase  note PDI-LIKE 1-4 (ATPDIL1-4); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: response to oxidative stress; LOCATED IN: mitochondrion, endoplasmic reticulum, plasma membrane, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Disulphide isomerase (InterPro:IPR005788), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Protein disulphide isomerase (InterPro:IPR005792), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATPDIL1-3 (PDI-LIKE 1-3); protein disulfide isomerase (TAIR:AT3G54960.1); Has 19324 Blast hits to 12614 proteins in 1719 species: Archae - 159; Bacteria - 6973; Metazoa - 4767; Fungi - 1176; Plants - 1523; Viruses - 13; Other Eukaryotes - 4713 (source: NCBI BLink).  protein_id AT5G60640.2p  transcript_id AT5G60640.2  protein_id AT5G60640.2p  transcript_id AT5G60640.2  
At5g60640	chr5:024373407	0.0	C/24373407-24373993,24373191-24373320,24372937-24373102,24372730-24372848,24372555-24372635,24372325-24372411,24372132-24372206,24371960-24372028,24371802-24371882,24371575-24371709,24371440-24371496,24371141-24371347	AT5G60640.1  CDS  gene_syn ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, ATPDI2, ATPDIL1-4, MUP24.6, MUP24_6, PDI-LIKE 1-4, PDI2, PROTEIN DISULFIDE ISOMERASE 2  gene ATPDIL1-4  function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). However, the level of transcripts for this gene is slightly elevated in atbzip60 mutants.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process response to oxidative stress|GO:0006979|12492832|IDA  go_function protein disulfide isomerase activity|GO:0003756|18574595|ISS  product ATPDIL1-4 (PDI-LIKE 1-4); protein disulfide isomerase  note PDI-LIKE 1-4 (ATPDIL1-4); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: response to oxidative stress; LOCATED IN: mitochondrion, endoplasmic reticulum, plasma membrane, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Disulphide isomerase (InterPro:IPR005788), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Protein disulphide isomerase (InterPro:IPR005792), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATPDIL1-3 (PDI-LIKE 1-3); protein disulfide isomerase (TAIR:AT3G54960.1); Has 19066 Blast hits to 12630 proteins in 1720 species: Archae - 159; Bacteria - 6953; Metazoa - 4582; Fungi - 1180; Plants - 1497; Viruses - 13; Other Eukaryotes - 4682 (source: NCBI BLink).  protein_id AT5G60640.1p  transcript_id AT5G60640.1  protein_id AT5G60640.1p  transcript_id AT5G60640.1  
At5g60650	chr5:024374305	0.0	C/24374305-24374748	AT5G60650.1  CDS  gene_syn MUP24.7, MUP24_7  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 16 Blast hits to 16 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G60650.1p  transcript_id AT5G60650.1  protein_id AT5G60650.1p  transcript_id AT5G60650.1  
At5g60660	chr5:024376633	0.0	C/24376633-24376939,24376283-24376433,24375900-24376185,24375673-24375804	AT5G60660.1  CDS  gene_syn MUP24.9, MUP24_9, PIP2;4, PIP2F, PLASMA MEMBRANE INTRINSIC PROTEIN 2;4  gene PIP2;4  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_function water channel activity|GO:0015250|9276950|ISS  go_function water channel activity|GO:0015250||ISS  product PIP2;4 (PLASMA MEMBRANE INTRINSIC PROTEIN 2;4); water channel  note PLASMA MEMBRANE INTRINSIC PROTEIN 2;4 (PIP2;4); FUNCTIONS IN: water channel activity; INVOLVED IN: transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2); water channel (TAIR:AT2G37170.1); Has 6746 Blast hits to 6740 proteins in 1245 species: Archae - 57; Bacteria - 2621; Metazoa - 1275; Fungi - 290; Plants - 1495; Viruses - 2; Other Eukaryotes - 1006 (source: NCBI BLink).  protein_id AT5G60660.1p  transcript_id AT5G60660.1  protein_id AT5G60660.1p  transcript_id AT5G60660.1  
At5g60670	chr5:024381066	0.0	C/24381066-24381566	AT5G60670.1  CDS  gene_syn MUP24.13, MUP24_13  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_component cytosolic large ribosomal subunit|GO:0022625||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L12 (RPL12C)  note 60S ribosomal protein L12 (RPL12C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L11 (InterPro:IPR000911); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L12 (RPL12B) (TAIR:AT3G53430.1); Has 1062 Blast hits to 1062 proteins in 383 species: Archae - 208; Bacteria - 187; Metazoa - 292; Fungi - 110; Plants - 81; Viruses - 0; Other Eukaryotes - 184 (source: NCBI BLink).  protein_id AT5G60670.1p  transcript_id AT5G60670.1  protein_id AT5G60670.1p  transcript_id AT5G60670.1  
At5g60680	chr5:024386247	0.0	W/24386247-24386738	AT5G60680.1  CDS  gene_syn MUP24.10, MUP24_10  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF584 (InterPro:IPR007608); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G45210.1); Has 210 Blast hits to 210 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 207; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G60680.1p  transcript_id AT5G60680.1  protein_id AT5G60680.1p  transcript_id AT5G60680.1  
At5g60690	chr5:024397734	0.0	W/24397734-24397966,24398275-24398437,24398555-24398628,24398707-24398797,24398889-24398984,24399072-24399185,24399268-24399351,24399427-24399582,24399671-24399745,24399827-24399933,24400017-24400191,24400279-24400467,24400553-24400633,24400719-24400853,24400936-24401273,24401362-24401470,24401548-24401697,24401775-24401933	AT5G60690.1  CDS  gene_syn HOMEODOMAIN-LEUCINE ZIPPER PROTEIN, HOMEODOMAIN-LEUCINE ZIPPER PROTEIN IFL1, IFL, IFL1, INTERFASCICULAR FIBERLESS, INTERFASCICULAR FIBERLESS 1, MUP24.16, MUP24_16, REV, REVOLUTA  gene REV  function REVOLUTA regulates meristem initiation at lateral positions. a member of a small homeodomain-leucine zipper family. Has overlapping functions with PHAVOLUTA and PHABULOSA.  go_component nucleus|GO:0005634|10559440|IDA  go_component nucleus|GO:0005634|16581911|IDA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process determination of bilateral symmetry|GO:0009855|15598805|IMP  go_process polarity specification of adaxial/abaxial axis|GO:0009944|15598805|IMP  go_process radial pattern formation|GO:0009956|14561401|IMP  go_process meristem initiation|GO:0010014|11169198|IMP  go_process xylem and phloem pattern formation|GO:0010051|14561401|IMP  go_process cell differentiation|GO:0030154|10559440|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|10559440|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function lipid binding|GO:0008289||ISS  product REV (REVOLUTA); DNA binding / lipid binding / transcription factor  note REVOLUTA (REV); FUNCTIONS IN: lipid binding, transcription factor activity, DNA binding; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), MEKHLA (InterPro:IPR013978), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: PHB (PHABULOSA); DNA binding / transcription factor (TAIR:AT2G34710.1); Has 2759 Blast hits to 2698 proteins in 222 species: Archae - 0; Bacteria - 10; Metazoa - 1010; Fungi - 53; Plants - 1647; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT5G60690.1p  transcript_id AT5G60690.1  protein_id AT5G60690.1p  transcript_id AT5G60690.1  
At5g60700	chr5:024404416	0.0	C/24404416-24404729,24403428-24404098,24402329-24403350	AT5G60700.1  CDS  gene_syn MUP24.12, MUP24_12  go_component cellular_component|GO:0005575||ND  go_process biosynthetic process|GO:0009058||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyltransferase family protein 2  note glycosyltransferase family protein 2; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12260.1); Has 129 Blast hits to 129 proteins in 45 species: Archae - 0; Bacteria - 6; Metazoa - 2; Fungi - 37; Plants - 38; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT5G60700.1p  transcript_id AT5G60700.1  protein_id AT5G60700.1p  transcript_id AT5G60700.1  
At5g60710	chr5:024414643	0.0	C/24414643-24414849,24410953-24412860	AT5G60710.1  CDS  gene_syn MUP24.2, MUP24_2  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G38970.1); Has 2846 Blast hits to 2822 proteins in 448 species: Archae - 47; Bacteria - 956; Metazoa - 852; Fungi - 161; Plants - 332; Viruses - 0; Other Eukaryotes - 498 (source: NCBI BLink).  protein_id AT5G60710.1p  transcript_id AT5G60710.1  protein_id AT5G60710.1p  transcript_id AT5G60710.1  
At5g60720	chr5:024421983	0.0	C/24421983-24422177,24421591-24421641,24421124-24421249,24420276-24420812,24419732-24420195,24419557-24419656,24419368-24419430,24419190-24419279,24418992-24419093,24418436-24418783	AT5G60720.1  CDS  gene_syn MUP24.14, MUP24_14  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G39690.1); Has 447 Blast hits to 420 proteins in 73 species: Archae - 0; Bacteria - 51; Metazoa - 39; Fungi - 0; Plants - 273; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT5G60720.1p  transcript_id AT5G60720.1  protein_id AT5G60720.1p  transcript_id AT5G60720.1  
At5g60730	chr5:024422838	0.0	W/24422838-24422976,24423461-24423672,24423756-24423818,24423899-24424000,24424096-24424170,24424248-24424316,24424405-24424470,24424565-24424642,24424720-24424818,24424953-24425087,24425215-24425352	AT5G60730.1  CDS  gene_syn MUP24.8, MUP24_8  go_process cellular metal ion homeostasis|GO:0006875||IEA  go_function ATP binding|GO:0005524||IEA  go_component membrane|GO:0016020||ISS  go_process anion transport|GO:0006820||ISS  go_function ATP binding|GO:0005524||ISS  product anion-transporting ATPase family protein  note anion-transporting ATPase family protein; FUNCTIONS IN: ATP binding; INVOLVED IN: cellular metal ion homeostasis, anion transport; LOCATED IN: membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, anion-transporting (InterPro:IPR003348); BEST Arabidopsis thaliana protein match is: anion-transporting ATPase family protein (TAIR:AT3G10350.1); Has 1699 Blast hits to 1435 proteins in 458 species: Archae - 114; Bacteria - 1109; Metazoa - 111; Fungi - 90; Plants - 59; Viruses - 0; Other Eukaryotes - 216 (source: NCBI BLink).  protein_id AT5G60730.1p  transcript_id AT5G60730.1  protein_id AT5G60730.1p  transcript_id AT5G60730.1  
At5g60740	chr5:024430043	0.0	C/24430043-24430269,24429895-24429971,24429538-24429813,24429385-24429448,24429159-24429305,24429039-24429073,24428862-24428935,24427875-24428776,24427507-24427803,24426925-24427425,24426696-24426844,24426325-24426614,24426085-24426218,24425824-24425980	AT5G60740.1  CDS  gene_syn MUP24.11, MUP24_11  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ATPase, coupled to transmembrane movement of substances  note ATPase, coupled to transmembrane movement of substances; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 (InterPro:IPR000412), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATNAP12; transporter (TAIR:AT2G37010.1); Has 213758 Blast hits to 197366 proteins in 2565 species: Archae - 4046; Bacteria - 149030; Metazoa - 7820; Fungi - 4196; Plants - 2644; Viruses - 18; Other Eukaryotes - 46004 (source: NCBI BLink).  protein_id AT5G60740.1p  transcript_id AT5G60740.1  protein_id AT5G60740.1p  transcript_id AT5G60740.1  
At5g60750	chr5:024431072	0.0	W/24431072-24431233,24431568-24431705,24432086-24432157,24432528-24433199	AT5G60750.1  CDS  gene_syn MUP24.17, MUP24_17  go_component chloroplast|GO:0009507||IEA  go_component membrane|GO:0016020||IEA  go_process proteolysis|GO:0006508||ISS  go_function endopeptidase activity|GO:0004175||ISS  product CAAX amino terminal protease family protein  note CAAX amino terminal protease family protein; FUNCTIONS IN: endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675); BEST Arabidopsis thaliana protein match is: CAAX amino terminal protease family protein (TAIR:AT1G14270.1); Has 2314 Blast hits to 2314 proteins in 559 species: Archae - 36; Bacteria - 1888; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 319 (source: NCBI BLink).  protein_id AT5G60750.1p  transcript_id AT5G60750.1  protein_id AT5G60750.1p  transcript_id AT5G60750.1  
At5g60760	chr5:024438465	0.0	W/24438465-24438635,24439268-24439590,24439897-24439978,24440129-24440551,24440625-24441365,24441444-24441551,24441636-24442004	AT5G60760.1  CDS  gene_syn MAE1.1, MAE1_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product 2-phosphoglycerate kinase-related  note 2-phosphoglycerate kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: 2-phosphoglycerate kinase-related (TAIR:AT3G45090.1); Has 1178 Blast hits to 911 proteins in 165 species: Archae - 61; Bacteria - 75; Metazoa - 269; Fungi - 58; Plants - 88; Viruses - 45; Other Eukaryotes - 582 (source: NCBI BLink).  protein_id AT5G60760.1p  transcript_id AT5G60760.1  protein_id AT5G60760.1p  transcript_id AT5G60760.1  
At5g60770	chr5:024444396	0.0	W/24444396-24444853,24445090-24445441,24445806-24445921,24446369-24447026	AT5G60770.1  CDS  gene_syn ATNRT2.4, MAE1.3, MAE1_3  gene ATNRT2.4  function member of High affinity nitrate transporter family  go_function nitrate transmembrane transporter activity|GO:0015112||ISS  product ATNRT2.4; nitrate transmembrane transporter  note ATNRT2.4; FUNCTIONS IN: nitrate transmembrane transporter activity; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ATNRT2:1 (NITRATE TRANSPORTER 2:1); nitrate transmembrane transporter (TAIR:AT1G08090.1); Has 3067 Blast hits to 2963 proteins in 789 species: Archae - 18; Bacteria - 2556; Metazoa - 21; Fungi - 172; Plants - 153; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink).  protein_id AT5G60770.1p  transcript_id AT5G60770.1  protein_id AT5G60770.1p  transcript_id AT5G60770.1  
At5g60780	chr5:024450839	0.0	W/24450839-24451669,24451867-24451982,24452084-24452756	AT5G60780.1  CDS  gene_syn ATNRT2.3, MAE1.4, MAE1_4  gene ATNRT2.3  function member of High affinity nitrate transporter family  go_function nitrate transmembrane transporter activity|GO:0015112||ISS  product ATNRT2.3; nitrate transmembrane transporter  note ATNRT2.3; FUNCTIONS IN: nitrate transmembrane transporter activity; EXPRESSED IN: shoot apex, leaf; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ATNRT2.6; nitrate transmembrane transporter (TAIR:AT3G45060.1); Has 2910 Blast hits to 2822 proteins in 773 species: Archae - 32; Bacteria - 2432; Metazoa - 3; Fungi - 149; Plants - 156; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).  protein_id AT5G60780.1p  transcript_id AT5G60780.1  protein_id AT5G60780.1p  transcript_id AT5G60780.1  
At5g60790	chr5:024455558	0.0	C/24455558-24455767,24454904-24455423,24453760-24454817	AT5G60790.1  CDS  gene_syn ATGCN1, MAE1.10, MAE1_10  gene ATGCN1  function member of GCN subfamily  go_component plasma membrane|GO:0005886|17317660|IDA  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  product ATGCN1; transporter  note ATGCN1; FUNCTIONS IN: transporter activity; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATGCN3; transporter (TAIR:AT1G64550.1); Has 306044 Blast hits to 187266 proteins in 2462 species: Archae - 6054; Bacteria - 224712; Metazoa - 6904; Fungi - 3221; Plants - 2140; Viruses - 52; Other Eukaryotes - 62961 (source: NCBI BLink).  protein_id AT5G60790.1p  transcript_id AT5G60790.1  protein_id AT5G60790.1p  transcript_id AT5G60790.1  
At5g60800	chr5:024462456	0.0	C/24462456-24462464,24462169-24462313,24461786-24462018,24461567-24461654,24461116-24461492	AT5G60800.1  CDS  gene_syn MAE1.5, MAE1_5  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT2G28090.1); Has 3168 Blast hits to 2132 proteins in 253 species: Archae - 8; Bacteria - 143; Metazoa - 824; Fungi - 153; Plants - 1162; Viruses - 9; Other Eukaryotes - 869 (source: NCBI BLink).  protein_id AT5G60800.1p  transcript_id AT5G60800.1  protein_id AT5G60800.1p  transcript_id AT5G60800.1  
At5g60805	chr5:024465439	0.0	C/24465439-24465487,24465060-24465331	AT5G60805.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G60805.1p  transcript_id AT5G60805.1  protein_id AT5G60805.1p  transcript_id AT5G60805.1  
At5g60810	chr5:024466854	0.0	C/24466854-24466961,24466531-24466728	AT5G60810.2  CDS  gene_syn MAE1.14, MAE1_14  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G60810.2p  transcript_id AT5G60810.2  protein_id AT5G60810.2p  transcript_id AT5G60810.2  
At5g60810	chr5:024467020	0.0	C/24467020-24467110,24466854-24466915,24466531-24466728	AT5G60810.1  CDS  gene_syn MAE1.14, MAE1_14  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G60810.1p  transcript_id AT5G60810.1  protein_id AT5G60810.1p  transcript_id AT5G60810.1  
At5g60820	chr5:024469636	0.0	W/24469636-24470895	AT5G60820.1  CDS  gene_syn MAE1.6, MAE1_6  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G08139.1); Has 6800 Blast hits to 6591 proteins in 264 species: Archae - 0; Bacteria - 123; Metazoa - 2390; Fungi - 543; Plants - 2247; Viruses - 74; Other Eukaryotes - 1423 (source: NCBI BLink).  protein_id AT5G60820.1p  transcript_id AT5G60820.1  protein_id AT5G60820.1p  transcript_id AT5G60820.1  
At5g60830	chr5:024472639	0.0	W/24472639-24473173,24473234-24473319	AT5G60830.1  CDS  gene_syn Arabidopsis thaliana basic leucine-zipper 70, AtbZIP70, MAE1.7, MAE1_7  gene AtbZIP70  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  product AtbZIP70 (Arabidopsis thaliana basic leucine-zipper 70); DNA binding / transcription factor  note Arabidopsis thaliana basic leucine-zipper 70 (AtbZIP70); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: AtbZIP75 (Arabidopsis thaliana basic leucine-zipper 75); DNA binding / transcription factor (TAIR:AT5G08141.1); Has 1247 Blast hits to 1245 proteins in 139 species: Archae - 3; Bacteria - 0; Metazoa - 255; Fungi - 35; Plants - 897; Viruses - 5; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT5G60830.1p  transcript_id AT5G60830.1  protein_id AT5G60830.1p  transcript_id AT5G60830.1  
At5g60840	chr5:024474289	0.0	C/24474289-24474423,24474146-24474216,24473960-24474048,24473813-24473867,24473442-24473715	AT5G60840.1  CDS  gene_syn MAE1.8, MAE1_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; Has 359 Blast hits to 315 proteins in 79 species: Archae - 2; Bacteria - 43; Metazoa - 176; Fungi - 34; Plants - 19; Viruses - 19; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT5G60840.1p  transcript_id AT5G60840.1  protein_id AT5G60840.1p  transcript_id AT5G60840.1  
At5g60850	chr5:024480578	0.0	W/24480578-24481501	AT5G60850.1  CDS  gene_syn MAE1.2, MAE1_2, OBP4, ZINC FINGER PROTEIN OBP4  gene OBP4  function Encodes a zinc finger protein.  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product OBP4; DNA binding / transcription factor  note OBP4; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT5G65590.1); Has 815 Blast hits to 804 proteins in 89 species: Archae - 0; Bacteria - 10; Metazoa - 128; Fungi - 8; Plants - 643; Viruses - 2; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT5G60850.1p  transcript_id AT5G60850.1  protein_id AT5G60850.1p  transcript_id AT5G60850.1  
At5g60860	chr5:024484750	0.0	W/24484750-24484970,24485133-24485565	AT5G60860.1  CDS  gene_syn Arabidopsis Rab GTPase homolog A1f, AtRABA1f, MAE1.9, MAE1_9  gene AtRABA1f  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product AtRABA1f (Arabidopsis Rab GTPase homolog A1f); GTP binding  note Arabidopsis Rab GTPase homolog A1f (AtRABA1f); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: AtRABA1g (Arabidopsis Rab GTPase homolog A1g); GTP binding (TAIR:AT3G15060.1); Has 21819 Blast hits to 21779 proteins in 607 species: Archae - 23; Bacteria - 103; Metazoa - 12072; Fungi - 2821; Plants - 1861; Viruses - 19; Other Eukaryotes - 4920 (source: NCBI BLink).  protein_id AT5G60860.1p  transcript_id AT5G60860.1  protein_id AT5G60860.1p  transcript_id AT5G60860.1  
At5g60870	chr5:024487245	0.0	C/24487245-24487257,24486954-24487100,24486501-24486695,24486298-24486426,24486060-24486215,24485788-24485978	AT5G60870.3  CDS  gene_syn MAE1.11, MAE1_11  go_process biological_process|GO:0008150||ND  go_function Ran GTPase binding|GO:0008536||ISS  product regulator of chromosome condensation (RCC1) family protein  note regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: Ran GTPase binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: UVR8 (UVB-RESISTANCE 8); chromatin binding / guanyl-nucleotide exchange factor (TAIR:AT5G63860.1); Has 15338 Blast hits to 4516 proteins in 291 species: Archae - 88; Bacteria - 1682; Metazoa - 6274; Fungi - 841; Plants - 1636; Viruses - 0; Other Eukaryotes - 4817 (source: NCBI BLink).  protein_id AT5G60870.3p  transcript_id AT5G60870.3  protein_id AT5G60870.3p  transcript_id AT5G60870.3  
At5g60870	chr5:024487245	0.0	C/24487245-24487564,24486954-24487093,24486501-24486695,24486298-24486426,24486060-24486215,24485788-24485999	AT5G60870.2  CDS  gene_syn MAE1.11, MAE1_11  go_process biological_process|GO:0008150||ND  go_function Ran GTPase binding|GO:0008536||ISS  product regulator of chromosome condensation (RCC1) family protein  note regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: Ran GTPase binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: UVR8 (UVB-RESISTANCE 8); chromatin binding / guanyl-nucleotide exchange factor (TAIR:AT5G63860.1); Has 14677 Blast hits to 4514 proteins in 292 species: Archae - 83; Bacteria - 1641; Metazoa - 5809; Fungi - 743; Plants - 1337; Viruses - 2; Other Eukaryotes - 5062 (source: NCBI BLink).  protein_id AT5G60870.2p  transcript_id AT5G60870.2  protein_id AT5G60870.2p  transcript_id AT5G60870.2  
At5g60870	chr5:024487245	0.0	C/24487245-24487771,24486954-24487093,24486501-24486695,24486298-24486426,24486060-24486215,24485788-24485978	AT5G60870.1  CDS  gene_syn MAE1.11, MAE1_11  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function Ran GTPase binding|GO:0008536||ISS  product regulator of chromosome condensation (RCC1) family protein  note regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: Ran GTPase binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: UVR8 (UVB-RESISTANCE 8); chromatin binding / guanyl-nucleotide exchange factor (TAIR:AT5G63860.1); Has 15979 Blast hits to 4615 proteins in 300 species: Archae - 95; Bacteria - 1703; Metazoa - 6193; Fungi - 797; Plants - 1473; Viruses - 2; Other Eukaryotes - 5716 (source: NCBI BLink).  protein_id AT5G60870.1p  transcript_id AT5G60870.1  protein_id AT5G60870.1p  transcript_id AT5G60870.1  
At5g60880	chr5:024489616	0.0	C/24489616-24489703,24489168-24489535,24488895-24489065	AT5G60880.2  CDS  gene_syn MAE1.13, MAE1_13  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, D bilateral stage, E expanded cotyledon stage; Has 10 Blast hits to 10 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 5; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G60880.2p  transcript_id AT5G60880.2  protein_id AT5G60880.2p  transcript_id AT5G60880.2  
At5g60880	chr5:024489616	0.0	C/24489616-24489703,24489168-24489535,24488934-24489065,24488759-24488850,24488553-24488661	AT5G60880.1  CDS  gene_syn MAE1.13, MAE1_13  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, D bilateral stage, E expanded cotyledon stage; Has 36 Blast hits to 35 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 3; Plants - 8; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT5G60880.1p  transcript_id AT5G60880.1  protein_id AT5G60880.1p  transcript_id AT5G60880.1  
At5g60890	chr5:024495029	0.0	W/24495029-24495161,24495254-24495383,24495596-24496220	AT5G60890.1  CDS  gene_syn ALTERED TRYPTOPHAN REGULATION 1, ATMYB34, ATR1, MSL3.10, MSL3_10, MYB DOMAIN PROTEIN 34, MYB34  gene MYB34  function Myb-like transcription factor that modulates expression of ASA1, a key point of control in the tryptophan pathway; mutant has deregulated expression of ASA1 in dominant allele. Loss of function allele suggests ATR1 also functions at a control point for regulating indole glucosinolate homeostasis.  go_component nucleus|GO:0005634|14617066|IDA  go_process tryptophan biosynthetic process|GO:0000162|9576939|IDA  go_process tryptophan biosynthetic process|GO:0000162|9576939|IMP  go_process defense response to insect|GO:0002213|18346197|IMP  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process indole glucosinolate biosynthetic process|GO:0009759|15579661|IMP  go_process cellular response to sulfur starvation|GO:0010438|17420480|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function kinase activity|GO:0016301|8220453|TAS  go_function transcription activator activity|GO:0016563|9576939|IMP  product MYB34 (MYB DOMAIN PROTEIN 34); DNA binding / kinase/ transcription activator/ transcription factor  note MYB DOMAIN PROTEIN 34 (MYB34); FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding, kinase activity; INVOLVED IN: in 9 processes; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB122 (MYB DOMAIN PROTEIN 122); DNA binding / transcription factor (TAIR:AT1G74080.1); Has 6361 Blast hits to 5808 proteins in 367 species: Archae - 0; Bacteria - 0; Metazoa - 703; Fungi - 315; Plants - 3768; Viruses - 6; Other Eukaryotes - 1569 (source: NCBI BLink).  protein_id AT5G60890.1p  transcript_id AT5G60890.1  protein_id AT5G60890.1p  transcript_id AT5G60890.1  
At5g60900	chr5:024500982	0.0	C/24500982-24501494,24500142-24500452,24499576-24500055,24498467-24499409	AT5G60900.1  CDS  gene_syn RECEPTOR-LIKE PROTEIN KINASE 1, RLK1  gene RLK1  function Encodes a receptor-like protein kinase.  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product RLK1 (RECEPTOR-LIKE PROTEIN KINASE 1); ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding  note RECEPTOR-LIKE PROTEIN KINASE 1 (RLK1); FUNCTIONS IN: in 7 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: lectin protein kinase family protein (TAIR:AT1G34300.1); Has 86163 Blast hits to 84334 proteins in 3226 species: Archae - 45; Bacteria - 7075; Metazoa - 37813; Fungi - 6582; Plants - 19729; Viruses - 409; Other Eukaryotes - 14510 (source: NCBI BLink).  protein_id AT5G60900.1p  transcript_id AT5G60900.1  protein_id AT5G60900.1p  transcript_id AT5G60900.1  
At5g60910	chr5:024504857	0.0	C/24504857-24504934,24504707-24504771,24504187-24504286,24504006-24504047,24503796-24503837,24502984-24503087,24502736-24502847	AT5G60910.2  CDS  gene_syn AGL8, FRUITFULL, FUL, MSL3.30, MSL3_30, agamous-like 8  gene AGL8  function MADS box gene negatively regulated by APETALA1  go_component nucleus|GO:0005634||IEA  go_process positive regulation of flower development|GO:0009911|16155177|TAS  go_process fruit development|GO:0010154|9502732|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL8 (agamous-like 8); transcription factor  note agamous-like 8 (AGL8); FUNCTIONS IN: transcription factor activity; INVOLVED IN: positive regulation of flower development, fruit development; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AP1 (APETALA1); DNA binding / protein binding / protein heterodimerization/ transcription activator/ transcription factor (TAIR:AT1G69120.1); Has 2858 Blast hits to 2857 proteins in 488 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 8; Plants - 2843; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G60910.2p  transcript_id AT5G60910.2  protein_id AT5G60910.2p  transcript_id AT5G60910.2  
At5g60910	chr5:024505829	0.0	C/24505829-24506013,24504857-24504935,24504707-24504771,24504187-24504286,24504006-24504047,24503796-24503837,24502984-24503087,24502736-24502847	AT5G60910.1  CDS  gene_syn AGL8, FRUITFULL, FUL, MSL3.30, MSL3_30, agamous-like 8  gene AGL8  function MADS box gene negatively regulated by APETALA1  go_component nucleus|GO:0005634||IEA  go_process positive regulation of flower development|GO:0009911|16155177|TAS  go_process fruit development|GO:0010154|9502732|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL8 (agamous-like 8); transcription factor  note agamous-like 8 (AGL8); FUNCTIONS IN: transcription factor activity; INVOLVED IN: positive regulation of flower development, fruit development; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AP1 (APETALA1); DNA binding / protein binding / protein heterodimerization/ transcription activator/ transcription factor (TAIR:AT1G69120.1); Has 5451 Blast hits to 5448 proteins in 710 species: Archae - 0; Bacteria - 2; Metazoa - 557; Fungi - 220; Plants - 4607; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT5G60910.1p  transcript_id AT5G60910.1  protein_id AT5G60910.1p  transcript_id AT5G60910.1  
At5g60920	chr5:024513830	0.0	C/24513830-24513932,24513105-24513184,24512893-24513019,24512479-24512808,24512214-24512373,24511840-24512123,24511466-24511752	AT5G60920.1  CDS  gene_syn COB, COBRA, MSL3.40, MSL3_40  gene COB  function Encodes a glycosylphosphatidylinositol-anchored protein localized primarily in the plasma membrane of the longitudinal sides of root cells. Necessary for oriented cell expansion in Arabidopsis. Cob mutants have abnormal roots that expand radially rather than longitudinally under certain growth conditions.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plant-type cell wall|GO:0009505|15849274|IDA  go_component external side of plasma membrane|GO:0009897|11331607|ISS  go_component longitudinal side of cell surface|GO:0009930|7743935|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12376623|TAS  go_component anchored to membrane|GO:0031225|12805592|TAS  go_component anchored to plasma membrane|GO:0046658|15849274|IDA  go_process response to salt stress|GO:0009651|18436742|IMP  go_process multidimensional cell growth|GO:0009825|11331607|IMP  go_process cellulose microfibril organization|GO:0010215|15849274|IMP  go_function molecular_function|GO:0003674||ND  product COB (COBRA)  note COBRA (COB); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress, multidimensional cell growth, cellulose microfibril organization; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918), COBRA-like (InterPro:IPR017391); BEST Arabidopsis thaliana protein match is: COBL1 (COBRA-LIKE PROTEIN 1 PRECURSOR) (TAIR:AT3G02210.1); Has 246 Blast hits to 242 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 246; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G60920.1p  transcript_id AT5G60920.1  protein_id AT5G60920.1p  transcript_id AT5G60920.1  
At5g60930	chr5:024522401	0.0	C/24522401-24522511,24521918-24522064,24521664-24521816,24521333-24521586,24520942-24521117,24520702-24520826,24520546-24520582,24520354-24520445,24520146-24520259,24519950-24520063,24519784-24519867,24519508-24519706,24519200-24519300,24519011-24519109,24518822-24518935,24518625-24518741,24518456-24518536,24518106-24518177,24517931-24518024,24517822-24517847,24517602-24517687,24517418-24517489,24517095-24517322,24516828-24516972,24516061-24516738,24515732-24515955,24515553-24515640,24515398-24515451	AT5G60930.1  CDS  gene_syn MSL3.50, MSL3_50  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product chromosome-associated kinesin, putative  note chromosome-associated kinesin, putative; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: FRA1 (FRAGILE FIBER 1); microtubule motor (TAIR:AT5G47820.2); Has 57499 Blast hits to 37773 proteins in 1353 species: Archae - 400; Bacteria - 4055; Metazoa - 29566; Fungi - 4402; Plants - 2518; Viruses - 179; Other Eukaryotes - 16379 (source: NCBI BLink).  protein_id AT5G60930.1p  transcript_id AT5G60930.1  protein_id AT5G60930.1p  transcript_id AT5G60930.1  
At5g60940	chr5:024523092	0.0	W/24523092-24523196,24523412-24523495,24523578-24523687,24523780-24523849,24523966-24524049,24524148-24524225,24524313-24524383,24524485-24524536,24524626-24524683,24524800-24524900,24525000-24525154,24525250-24525358,24525443-24525655	AT5G60940.1  CDS  gene_syn MSL3.60, MSL3_60  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G49660.1); Has 25427 Blast hits to 14466 proteins in 495 species: Archae - 44; Bacteria - 4154; Metazoa - 11377; Fungi - 4590; Plants - 1838; Viruses - 0; Other Eukaryotes - 3424 (source: NCBI BLink).  protein_id AT5G60940.1p  transcript_id AT5G60940.1  protein_id AT5G60940.1p  transcript_id AT5G60940.1  
At5g60940	chr5:024523757	0.0	W/24523757-24523849,24523966-24524049,24524148-24524225,24524313-24524383,24524485-24524536,24524626-24524683,24524800-24524900,24525000-24525154,24525250-24525358,24525443-24525655	AT5G60940.2  CDS  gene_syn MSL3.60, MSL3_60  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G49660.1); Has 25524 Blast hits to 14328 proteins in 493 species: Archae - 44; Bacteria - 4194; Metazoa - 11398; Fungi - 4592; Plants - 1865; Viruses - 0; Other Eukaryotes - 3431 (source: NCBI BLink).  protein_id AT5G60940.2p  transcript_id AT5G60940.2  protein_id AT5G60940.2p  transcript_id AT5G60940.2  
At5g60945	chr5:024526298	0.0	W/24526298-24526636	AT5G60945.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G60964.1); Has 54 Blast hits to 54 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G60945.1p  transcript_id AT5G60945.1  protein_id AT5G60945.1p  transcript_id AT5G60945.1  
At5g60950	chr5:024527939	0.0	C/24527939-24528005,24527787-24527860,24527283-24527715,24527157-24527197	AT5G60950.1  CDS  gene_syn COBL5, COBRA-LIKE PROTEIN 5 PRECURSOR, MSL3.7, MSL3_7  gene COBL5  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product COBL5 (COBRA-LIKE PROTEIN 5 PRECURSOR)  note COBRA-LIKE PROTEIN 5 PRECURSOR (COBL5); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918); BEST Arabidopsis thaliana protein match is: COB (COBRA) (TAIR:AT5G60920.1); Has 234 Blast hits to 234 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 234; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G60950.1p  transcript_id AT5G60950.1  protein_id AT5G60950.1p  transcript_id AT5G60950.1  
At5g60960	chr5:024528423	0.0	C/24528423-24529988	AT5G60960.1  CDS  gene_syn MSL3.8, MSL3_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G61370.1); Has 7695 Blast hits to 2526 proteins in 64 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 28; Plants - 7580; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT5G60960.1p  transcript_id AT5G60960.1  protein_id AT5G60960.1p  transcript_id AT5G60960.1  
At5g60963	chr5:024530176	0.0	W/24530176-24530248	AT5G60963.1  tRNA  gene_syn 67897.TRNA-ALA-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: CGC)  transcript_id AT5G60963.1  
At5g60964	chr5:024530586	0.0	W/24530586-24530924	AT5G60964.1  CDS  function Encodes a ECA1 gametogenesis related family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G60945.1); Has 52 Blast hits to 52 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G60964.1p  transcript_id AT5G60964.1  protein_id AT5G60964.1p  transcript_id AT5G60964.1  
At5g60966	chr5:024531667	0.0	W/24531667-24531738	AT5G60966.1  tRNA  gene_syn 67897.TRNA-THR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Thr (anticodon: CGT)  transcript_id AT5G60966.1  
At5g60970	chr5:024535570	0.0	C/24535570-24536652	AT5G60970.1  CDS  gene_syn MSL3.11, MSL3_11, TCP5, TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 5  gene TCP5  function TCP gene involved in heterochronic control of leaf differentiation.  go_component cellular_component|GO:0005575||ND  go_process leaf morphogenesis|GO:0009965|18805992|IGI  go_process cell differentiation|GO:0030154|18805992|IGI  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process positive regulation of development, heterochronic|GO:0045962|18805992|IGI  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product TCP5 (TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 5); transcription factor  note TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 5 (TCP5); FUNCTIONS IN: transcription factor activity; INVOLVED IN: cell differentiation, positive regulation of development, heterochronic, leaf morphogenesis, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP17 (TCP DOMAIN PROTEIN 17); transcription factor (TAIR:AT5G08070.1); Has 1225 Blast hits to 1219 proteins in 275 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 12; Plants - 1140; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT5G60970.1p  transcript_id AT5G60970.1  protein_id AT5G60970.1p  transcript_id AT5G60970.1  
At5g60978	chr5:024542499	0.0	W/24542499-24542855	AT5G60978.1  pseudogenic_transcript  pseudo  function Encodes a ECA1 gametogenesis related family protein [pseudogene]  
At5g60980	chr5:024543988	0.0	W/24543988-24544167,24544258-24544555,24544656-24544876,24544977-24545145,24545231-24545352,24545429-24545494,24545605-24545668,24545765-24546027	AT5G60980.2  CDS  gene_syn MSL3.12, MSL3_12  go_component intracellular|GO:0005622||IEA  go_process transport|GO:0006810||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process nucleocytoplasmic transport|GO:0006913||ISS  go_function RNA binding|GO:0003723||ISS  product nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein  note nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: transport, nucleocytoplasmic transport; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G25150.1); Has 32736 Blast hits to 13928 proteins in 925 species: Archae - 9; Bacteria - 11373; Metazoa - 9852; Fungi - 2838; Plants - 4351; Viruses - 467; Other Eukaryotes - 3846 (source: NCBI BLink).  protein_id AT5G60980.2p  transcript_id AT5G60980.2  protein_id AT5G60980.2p  transcript_id AT5G60980.2  
At5g60980	chr5:024543988	0.0	W/24543988-24544167,24544258-24544555,24544656-24544876,24544977-24545145,24545231-24545352,24545432-24545494,24545605-24545668,24545765-24546027	AT5G60980.1  CDS  gene_syn MSL3.12, MSL3_12  go_component intracellular|GO:0005622||IEA  go_process transport|GO:0006810||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process nucleocytoplasmic transport|GO:0006913||ISS  go_function RNA binding|GO:0003723||ISS  product nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein  note nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: transport, nucleocytoplasmic transport; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G25150.1); Has 32640 Blast hits to 13569 proteins in 930 species: Archae - 10; Bacteria - 11370; Metazoa - 9825; Fungi - 2778; Plants - 4355; Viruses - 468; Other Eukaryotes - 3834 (source: NCBI BLink).  protein_id AT5G60980.1p  transcript_id AT5G60980.1  protein_id AT5G60980.1p  transcript_id AT5G60980.1  
At5g60990	chr5:024549013	0.0	C/24549013-24549148,24548717-24548876,24548555-24548624,24548403-24548465,24548245-24548319,24548030-24548149,24547864-24547905,24547699-24547773,24547448-24547594,24547230-24547367,24547014-24547125,24546845-24546933,24546601-24546744	AT5G60990.1  CDS  gene_syn MSL3.110, MSL3_110  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_component cellular_component|GO:0005575||ND  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD/DEAH box helicase, putative (RH10)  note DEAD/DEAH box helicase, putative (RH10); FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (TAIR:AT1G16280.1); Has 28388 Blast hits to 27738 proteins in 1747 species: Archae - 544; Bacteria - 11223; Metazoa - 5237; Fungi - 3423; Plants - 1399; Viruses - 44; Other Eukaryotes - 6518 (source: NCBI BLink).  protein_id AT5G60990.1p  transcript_id AT5G60990.1  protein_id AT5G60990.1p  transcript_id AT5G60990.1  
At5g61000	chr5:024552514	0.0	C/24552514-24552641,24552121-24552267,24551788-24552015,24551510-24551687,24551154-24551424,24550839-24551066,24550677-24550755,24550444-24550588,24550195-24550355,24549975-24550095,24549682-24549885	AT5G61000.1  CDS  gene_syn MSL3.120, MSL3_120  go_component nucleus|GO:0005634||IEA  go_process DNA replication|GO:0006260||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_process DNA replication|GO:0006260||ISS  product replication protein, putative  note replication protein, putative; FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: DNA replication; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Replication factor-a protein 1 Rpa1 (InterPro:IPR004591), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Replication factor-A, C-terminal (InterPro:IPR013955), Replication factor-A protein 1, N-terminal (InterPro:IPR007199); BEST Arabidopsis thaliana protein match is: RPA70B (RPA70-KDA SUBUNIT B); DNA binding / nucleic acid binding (TAIR:AT5G08020.1); Has 604 Blast hits to 602 proteins in 161 species: Archae - 4; Bacteria - 0; Metazoa - 182; Fungi - 92; Plants - 208; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).  protein_id AT5G61000.1p  transcript_id AT5G61000.1  protein_id AT5G61000.1p  transcript_id AT5G61000.1  
At5g61010	chr5:024554612	0.0	W/24554612-24556531	AT5G61010.1  CDS  gene_syn ATEXO70E2, EXOCYST SUBUNIT EXO70 FAMILY PROTEIN E2, MAF19.1, MAF19_1  gene ATEXO70E2  function A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.  go_component exocyst|GO:0000145||IEA  go_process exocytosis|GO:0006887||IEA  go_component exocyst|GO:0000145||ISS  go_process vesicle docking during exocytosis|GO:0006904||ISS  go_function protein binding|GO:0005515||ISS  product ATEXO70E2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN E2); protein binding  note EXOCYST SUBUNIT EXO70 FAMILY PROTEIN E2 (ATEXO70E2); FUNCTIONS IN: protein binding; INVOLVED IN: exocytosis, vesicle docking during exocytosis; LOCATED IN: exocyst; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: ATEXO70E1 (exocyst subunit EXO70 family protein E1); protein binding (TAIR:AT3G29400.1); Has 497 Blast hits to 497 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 11; Plants - 370; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G61010.1p  transcript_id AT5G61010.1  protein_id AT5G61010.1p  transcript_id AT5G61010.1  
At5g61010	chr5:024554612	0.0	W/24554612-24556531	AT5G61010.2  CDS  gene_syn ATEXO70E2, EXOCYST SUBUNIT EXO70 FAMILY PROTEIN E2, MAF19.1, MAF19_1  gene ATEXO70E2  function A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.  go_component exocyst|GO:0000145||IEA  go_process exocytosis|GO:0006887||IEA  go_component exocyst|GO:0000145||ISS  go_process vesicle docking during exocytosis|GO:0006904||ISS  go_function protein binding|GO:0005515||ISS  product ATEXO70E2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN E2); protein binding  note EXOCYST SUBUNIT EXO70 FAMILY PROTEIN E2 (ATEXO70E2); FUNCTIONS IN: protein binding; INVOLVED IN: exocytosis, vesicle docking during exocytosis; LOCATED IN: exocyst; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: ATEXO70E1 (exocyst subunit EXO70 family protein E1); protein binding (TAIR:AT3G29400.1); Has 497 Blast hits to 497 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 11; Plants - 370; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G61010.2p  transcript_id AT5G61010.2  protein_id AT5G61010.2p  transcript_id AT5G61010.2  
At5g61020	chr5:024559765	0.0	C/24559765-24559780,24559363-24559436,24558957-24559241,24558298-24558858,24557995-24558207,24557761-24557907,24557485-24557670	AT5G61020.2  CDS  gene_syn ECT3, MAF19.3, MAF19_3  gene ECT3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ECT3  note ECT3; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: YT521-B-like protein (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: ECT2; protein binding (TAIR:AT3G13460.4); Has 834 Blast hits to 826 proteins in 141 species: Archae - 0; Bacteria - 4; Metazoa - 413; Fungi - 104; Plants - 206; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT5G61020.2p  transcript_id AT5G61020.2  protein_id AT5G61020.2p  transcript_id AT5G61020.2  
At5g61020	chr5:024559765	0.0	C/24559765-24559780,24559363-24559436,24558957-24559247,24558298-24558858,24557995-24558207,24557761-24557907,24557485-24557670	AT5G61020.1  CDS  gene_syn ECT3, MAF19.3, MAF19_3  gene ECT3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ECT3  note ECT3; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: YT521-B-like protein (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: ECT2; protein binding (TAIR:AT3G13460.4); Has 838 Blast hits to 830 proteins in 142 species: Archae - 0; Bacteria - 4; Metazoa - 413; Fungi - 108; Plants - 206; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT5G61020.1p  transcript_id AT5G61020.1  protein_id AT5G61020.1p  transcript_id AT5G61020.1  
At5g61030	chr5:024560870	0.0	W/24560870-24561005,24561100-24561168,24561303-24561409,24561535-24562152	AT5G61030.1  CDS  gene_syn GR-RBP3, MAF19.4, MAF19_4, glycine-rich RNA-binding protein 3  gene GR-RBP3  function encodes a glycine-rich RNA binding protein. Gene expression is induced by cold.  go_component mitochondrion|GO:0005739|17137349|IDA  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process response to cold|GO:0009409|16207746|IEP  go_function RNA binding|GO:0003723||ISS  product GR-RBP3 (glycine-rich RNA-binding protein 3); ATP binding / RNA binding  note glycine-rich RNA-binding protein 3 (GR-RBP3); FUNCTIONS IN: RNA binding, ATP binding; INVOLVED IN: response to cold; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: GR-RBP5 (glycine-rich RNA-binding protein 5); ATP binding / RNA binding (TAIR:AT1G74230.1); Has 167205 Blast hits to 58207 proteins in 2125 species: Archae - 318; Bacteria - 41343; Metazoa - 60776; Fungi - 13616; Plants - 15570; Viruses - 1689; Other Eukaryotes - 33893 (source: NCBI BLink).  protein_id AT5G61030.1p  transcript_id AT5G61030.1  protein_id AT5G61030.1p  transcript_id AT5G61030.1  
At5g61040	chr5:024563705	0.0	C/24563705-24564395,24563307-24563617,24562431-24563201	AT5G61040.1  CDS  gene_syn MAF19.5, MAF19_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08010.1); Has 3590 Blast hits to 2842 proteins in 339 species: Archae - 57; Bacteria - 267; Metazoa - 1679; Fungi - 264; Plants - 142; Viruses - 21; Other Eukaryotes - 1160 (source: NCBI BLink).  protein_id AT5G61040.1p  transcript_id AT5G61040.1  protein_id AT5G61040.1p  transcript_id AT5G61040.1  
At5g61050	chr5:024566412	0.0	C/24566412-24566615,24566134-24566327,24565910-24566039,24565763-24565827,24565482-24565647	AT5G61050.1  CDS  gene_syn MAF19.6, MAF19_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product histone deacetylase-related / HD-related  note histone deacetylase-related / HD-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: HDA05 (HISTONE DEACETYLASE 5); histone deacetylase (TAIR:AT5G61060.1); Has 45 Blast hits to 45 proteins in 17 species: Archae - 0; Bacteria - 21; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G61050.1p  transcript_id AT5G61050.1  protein_id AT5G61050.1p  transcript_id AT5G61050.1  
At5g61060	chr5:024570715	0.0	C/24570715-24570917,24570017-24570218,24569760-24569906,24569548-24569660,24569202-24569413,24569061-24569125,24568725-24568895,24568516-24568599,24568066-24568299,24567783-24567976,24567552-24567678,24567403-24567467,24567137-24567302	AT5G61060.1  CDS  gene_syn HDA05, HDA5, HISTONE DEACETYLASE 5, MAF19.7, MAF19_7  gene HDA05  function Encodes a member of the histone deacetylase family.  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process histone deacetylation|GO:0016575||ISS  go_function histone deacetylase activity|GO:0004407|12466527|ISS  go_function histone deacetylase activity|GO:0004407||ISS  product HDA05 (HISTONE DEACETYLASE 5); histone deacetylase  note HISTONE DEACETYLASE 5 (HDA05); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: histone deacetylation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: HDA18; H3/H4 histone acetyltransferase/ histone deacetylase (TAIR:AT5G61070.1); Has 7163 Blast hits to 7036 proteins in 852 species: Archae - 124; Bacteria - 2031; Metazoa - 1135; Fungi - 420; Plants - 347; Viruses - 0; Other Eukaryotes - 3106 (source: NCBI BLink).  protein_id AT5G61060.1p  transcript_id AT5G61060.1  protein_id AT5G61060.1p  transcript_id AT5G61060.1  
At5g61070	chr5:024574071	0.0	C/24574071-24574372,24573521-24573722,24573269-24573415,24573033-24573145,24572723-24572934,24572580-24572644,24572278-24572448,24571297-24572133	AT5G61070.1  CDS  gene_syn HDA18, MAF19.8, MAF19_8  gene HDA18  function Encodes a protein with similarity to histone deacetylases, a class of chromatin remodeling factors which act on H3/H4 histones. Expressed in roots where it appears to regulate the expression of epidermal cell fate genes controlling hair cell differentiation.  go_component cellular_component|GO:0005575||ND  go_process chromatin remodeling|GO:0006338|12466527|ISS  go_process histone deacetylation|GO:0016575||ISS  go_process regulation of epidermal cell differentiation|GO:0045604|16176989|IMP  go_function H3/H4 histone acetyltransferase activity|GO:0004406|12466527|ISS  go_function histone deacetylase activity|GO:0004407|12466527|ISS  go_function histone deacetylase activity|GO:0004407||ISS  product HDA18; H3/H4 histone acetyltransferase/ histone deacetylase  note HDA18; FUNCTIONS IN: histone deacetylase activity, H3/H4 histone acetyltransferase activity; INVOLVED IN: regulation of epidermal cell differentiation, chromatin remodeling, histone deacetylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, seed; EXPRESSED DURING: D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: HDA05 (HISTONE DEACETYLASE 5); histone deacetylase (TAIR:AT5G61060.1); Has 30451 Blast hits to 21248 proteins in 1310 species: Archae - 483; Bacteria - 4127; Metazoa - 13657; Fungi - 2260; Plants - 1292; Viruses - 75; Other Eukaryotes - 8557 (source: NCBI BLink).  protein_id AT5G61070.1p  transcript_id AT5G61070.1  protein_id AT5G61070.1p  transcript_id AT5G61070.1  
At5g61090	chr5:024576835	0.0	C/24576835-24577585,24576610-24576733,24575958-24576185,24575731-24575855,24574902-24575647	AT5G61090.1  CDS  gene_syn MAF19.21, MAF19_21  go_component chloroplast|GO:0009507||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G61120.1); Has 21094 Blast hits to 12609 proteins in 1014 species: Archae - 80; Bacteria - 5280; Metazoa - 6369; Fungi - 2332; Plants - 2815; Viruses - 928; Other Eukaryotes - 3290 (source: NCBI BLink).  protein_id AT5G61090.1p  transcript_id AT5G61090.1  protein_id AT5G61090.1p  transcript_id AT5G61090.1  
At5g61100	chr5:024580241	0.0	C/24580241-24580327,24579890-24579978,24579366-24579787,24579170-24579255	AT5G61100.1  CDS  gene_syn MAF19.10, MAF19_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT5G61110.1); Has 53 Blast hits to 48 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 45; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G61100.1p  transcript_id AT5G61100.1  protein_id AT5G61100.1p  transcript_id AT5G61100.1  
At5g61110	chr5:024581908	0.0	C/24581908-24581991,24581594-24581682,24581260-24581504,24581078-24581145	AT5G61110.1  CDS  gene_syn MAF19.11, MAF19_11  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G61100.1); Has 41 Blast hits to 36 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G61110.1p  transcript_id AT5G61110.1  protein_id AT5G61110.1p  transcript_id AT5G61110.1  
At5g61120	chr5:024585007	0.0	C/24585007-24585030,24584376-24584461,24583801-24584276,24583552-24583675,24583080-24583310,24582882-24583006,24582663-24582808,24582486-24582554	AT5G61120.1  CDS  gene_syn MAF19.12, MAF19_12  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT5G61090.1); Has 77 Blast hits to 70 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G61120.1p  transcript_id AT5G61120.1  protein_id AT5G61120.1p  transcript_id AT5G61120.1  
At5g61130	chr5:024589318	0.0	C/24589318-24589369,24588707-24588946,24588383-24588416,24587438-24587717	AT5G61130.1  CDS  gene_syn MAF19.13, MAF19_13, PDCB1, PLASMODESMATA CALLOSE-BINDING PROTEIN 1  gene PDCB1  function Encodes a plasmodesmatal localized protein with callose binding activity. The function of PDCB1 is unknown but overexpression leads to the hyperaccumulation of callose.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_component plasmodesma|GO:0009506|19223515|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process callose deposition in cell wall|GO:0052543|19223515|IMP  go_function polysaccharide binding|GO:0030247|19223515|IDA  go_function callose binding|GO:0080087|19223515|IDA  product PDCB1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 1); callose binding / polysaccharide binding  note PLASMODESMATA CALLOSE-BINDING PROTEIN 1 (PDCB1); FUNCTIONS IN: callose binding, polysaccharide binding; INVOLVED IN: callose deposition in cell wall; LOCATED IN: plasmodesma, anchored to plasma membrane, plasma membrane, anchored to membrane, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: E13L3 (GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 3); callose binding / polysaccharide binding (TAIR:AT5G08000.1); Has 1521 Blast hits to 1335 proteins in 169 species: Archae - 0; Bacteria - 89; Metazoa - 135; Fungi - 194; Plants - 805; Viruses - 12; Other Eukaryotes - 286 (source: NCBI BLink).  protein_id AT5G61130.1p  transcript_id AT5G61130.1  protein_id AT5G61130.1p  transcript_id AT5G61130.1  
At5g61140	chr5:024589999	0.0	W/24589999-24590321,24590517-24590578,24590664-24590844,24590999-24591428,24591518-24591583,24591892-24591996,24592089-24592385,24592568-24592684,24592767-24592826,24593036-24593107,24593183-24593299,24593390-24593551,24593665-24593730,24593853-24594005,24594089-24594172,24594368-24594442,24594523-24594654,24594728-24594793,24594936-24595001,24595085-24595207,24595332-24595481,24595634-24595846,24595946-24596101,24596196-24596420,24596510-24596590,24596696-24596764,24596850-24596930,24597147-24597350,24597451-24597567,24597673-24597795,24598026-24598115,24598223-24598348,24598413-24598475,24598675-24598763,24599035-24599125,24599314-24599463,24599561-24599752,24599849-24599914,24600029-24600184,24600271-24600414,24600597-24600664,24600750-24600915,24600987-24601049,24601149-24601244,24602235-24602402,24602492-24602662,24602759-24602908,24602994-24603125,24603228-24603311	AT5G61140.1  CDS  gene_syn MAF19.14, MAF19_14  function Encodes a predicted protein with 30% identity with MER3/RCK.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD box RNA helicase, putative  note DEAD box RNA helicase, putative; FUNCTIONS IN: in 6 functions; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: emb1507 (embryo defective 1507); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding / nucleoside-triphosphatase/ nucleotide binding (TAIR:AT1G20960.1); Has 13559 Blast hits to 8041 proteins in 1103 species: Archae - 1048; Bacteria - 4516; Metazoa - 1923; Fungi - 1393; Plants - 401; Viruses - 58; Other Eukaryotes - 4220 (source: NCBI BLink).  protein_id AT5G61140.1p  transcript_id AT5G61140.1  protein_id AT5G61140.1p  transcript_id AT5G61140.1  
At5g61150	chr5:024607412	0.0	C/24607412-24607528,24606817-24607148,24606518-24606647,24606194-24606394,24605695-24605871,24605197-24605328,24604817-24604996,24604599-24604727,24604420-24604509,24604075-24604326,24603846-24603983	AT5G61150.1  CDS  gene_syn MAF19.15, MAF19_15, VERNALIZATION INDEPENDENCE 4, VIP4  gene VIP4  function Encodes highly hydrophilic protein involved in positively regulating FLC expression. Mutants are early flowering and show a loss of FLC expression in the absence of cold.  go_component cytosol|GO:0005829|18433157|IDA  go_process negative regulation of flower development|GO:0009910|12207655|IMP  go_process vernalization response|GO:0010048|12207655|IMP  go_function protein binding|GO:0005515|12207655|ISS  product VIP4 (VERNALIZATION INDEPENDENCE 4); protein binding  note VERNALIZATION INDEPENDENCE 4 (VIP4); FUNCTIONS IN: protein binding; INVOLVED IN: negative regulation of flower development, vernalization response; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leo1-like protein (InterPro:IPR007149); Has 63384 Blast hits to 26698 proteins in 1192 species: Archae - 109; Bacteria - 7186; Metazoa - 28537; Fungi - 6965; Plants - 2418; Viruses - 847; Other Eukaryotes - 17322 (source: NCBI BLink).  protein_id AT5G61150.1p  transcript_id AT5G61150.1  protein_id AT5G61150.1p  transcript_id AT5G61150.1  
At5g61150	chr5:024607412	0.0	C/24607412-24607528,24606817-24607148,24606518-24606647,24606194-24606394,24605695-24605871,24605197-24605328,24604817-24604996,24604599-24604727,24604420-24604509,24604081-24604326,24603846-24603983	AT5G61150.2  CDS  gene_syn MAF19.15, MAF19_15, VERNALIZATION INDEPENDENCE 4, VIP4  gene VIP4  function Encodes highly hydrophilic protein involved in positively regulating FLC expression. Mutants are early flowering and show a loss of FLC expression in the absence of cold.  go_component cytosol|GO:0005829|18433157|IDA  go_process negative regulation of flower development|GO:0009910|12207655|IMP  go_process vernalization response|GO:0010048|12207655|IMP  go_function protein binding|GO:0005515|12207655|ISS  product VIP4 (VERNALIZATION INDEPENDENCE 4); protein binding  note VERNALIZATION INDEPENDENCE 4 (VIP4); FUNCTIONS IN: protein binding; INVOLVED IN: negative regulation of flower development, vernalization response; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leo1-like protein (InterPro:IPR007149); Has 66159 Blast hits to 27808 proteins in 1268 species: Archae - 111; Bacteria - 7435; Metazoa - 29861; Fungi - 7248; Plants - 2694; Viruses - 891; Other Eukaryotes - 17919 (source: NCBI BLink).  protein_id AT5G61150.2p  transcript_id AT5G61150.2  protein_id AT5G61150.2p  transcript_id AT5G61150.2  
At5g61160	chr5:024608781	0.0	W/24608781-24610139	AT5G61160.1  CDS  gene_syn AACT1, MAF19.17, MAF19_17, anthocyanin 5-aromatic acyltransferase 1  gene AACT1  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product AACT1 (anthocyanin 5-aromatic acyltransferase 1); transferase/ transferase, transferring acyl groups other than amino-acyl groups  note anthocyanin 5-aromatic acyltransferase 1 (AACT1); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT3G29680.1); Has 1009 Blast hits to 1001 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 24; Plants - 985; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G61160.1p  transcript_id AT5G61160.1  protein_id AT5G61160.1p  transcript_id AT5G61160.1  
At5g61170	chr5:024611158	0.0	W/24611158-24611241,24611497-24611587,24611660-24611843,24612130-24612202	AT5G61170.1  CDS  gene_syn MAF19.23, MAF19_23  go_component vacuole|GO:0005773|15539469|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S19 (RPS19C)  note 40S ribosomal protein S19 (RPS19C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S19e, conserved site (InterPro:IPR018277), Ribosomal protein S19e (InterPro:IPR001266); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S19 (RPS19B) (TAIR:AT5G15520.1); Has 883 Blast hits to 883 proteins in 288 species: Archae - 134; Bacteria - 5; Metazoa - 345; Fungi - 97; Plants - 125; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).  protein_id AT5G61170.1p  transcript_id AT5G61170.1  protein_id AT5G61170.1p  transcript_id AT5G61170.1  
At5g61180	chr5:024612867	0.0	W/24612867-24613317,24613405-24613886,24614067-24614174	AT5G61180.1  CDS  gene_syn MAF19.18, MAF19_18  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62200.1); Has 188 Blast hits to 186 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 54; Fungi - 16; Plants - 116; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G61180.1p  transcript_id AT5G61180.1  protein_id AT5G61180.1p  transcript_id AT5G61180.1  
At5g61190	chr5:024615480	0.0	W/24615480-24615723,24616024-24616589,24616690-24617083,24617172-24617302,24617422-24617535,24617694-24617852,24617982-24618271,24618354-24618420,24618653-24618979,24619132-24619550,24619664-24619886	AT5G61190.1  CDS  gene_syn MAF19.19, MAF19_19  go_component chloroplast|GO:0009507|18431481|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger protein-related  note zinc finger protein-related; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Protein of unknown function DUF537 (InterPro:IPR007491), Zinc finger, U1-type (InterPro:IPR003604), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62200.1); Has 2498 Blast hits to 1976 proteins in 181 species: Archae - 10; Bacteria - 85; Metazoa - 1054; Fungi - 97; Plants - 259; Viruses - 10; Other Eukaryotes - 983 (source: NCBI BLink).  protein_id AT5G61190.1p  transcript_id AT5G61190.1  protein_id AT5G61190.1p  transcript_id AT5G61190.1  
At5g61200	chr5:024621035	0.0	W/24621035-24621661,24621763-24621930,24622025-24622081	AT5G61200.1  CDS  gene_syn MAF19.20, MAF19_20  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT5G07890.3); Has 18449 Blast hits to 11599 proteins in 735 species: Archae - 200; Bacteria - 1095; Metazoa - 10894; Fungi - 1054; Plants - 584; Viruses - 54; Other Eukaryotes - 4568 (source: NCBI BLink).  protein_id AT5G61200.1p  transcript_id AT5G61200.1  protein_id AT5G61200.1p  transcript_id AT5G61200.1  
At5g61200	chr5:024621035	0.0	W/24621035-24621661,24621763-24622023	AT5G61200.2  CDS  gene_syn MAF19.20, MAF19_20  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT5G07890.3); Has 16176 Blast hits to 10395 proteins in 702 species: Archae - 187; Bacteria - 979; Metazoa - 9556; Fungi - 894; Plants - 535; Viruses - 52; Other Eukaryotes - 3973 (source: NCBI BLink).  protein_id AT5G61200.2p  transcript_id AT5G61200.2  protein_id AT5G61200.2p  transcript_id AT5G61200.2  
At5g61210	chr5:024624027	0.0	W/24624027-24624506,24624640-24624733,24624826-24624956,24625169-24625366	AT5G61210.1  CDS  gene_syn ATSNAP33, ATSNAP33B, MAF19.2, MAF19_2, SNAP33, SNP33, SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33  gene SNAP33  function membrane localized t-SNARE SNAP25 homologue, probably involved in cytokinesis and cell plate formation  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component integral to membrane of membrane fraction|GO:0000299|11591731|IDA  go_component plasma membrane|GO:0005886|11115874|TAS  go_component plasma membrane|GO:0005886|11591731|IDA  go_component cell plate|GO:0009504|11591731|IDA  go_process cytokinesis by cell plate formation|GO:0000911|11591731|IMP  go_process membrane fusion|GO:0006944|11115874|TAS  go_process response to mechanical stimulus|GO:0009612|12746539|IEP  go_process vesicle-mediated transport|GO:0016192|11115874|TAS  go_process response to other organism|GO:0051707|12746539|IEP  go_function SNAP receptor activity|GO:0005484|11115874|ISS  go_function SNAP receptor activity|GO:0005484|11591731|IPI  go_function protein binding|GO:0005515|11591731|IPI  product SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33); SNAP receptor/ protein binding  note SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33 (SNAP33); FUNCTIONS IN: protein binding, SNAP receptor activity; INVOLVED IN: membrane fusion, response to other organism, vesicle-mediated transport, response to mechanical stimulus, cytokinesis by cell plate formation; LOCATED IN: integral to membrane of membrane fraction, plasma membrane, chloroplast, cell plate; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SNAP-25 (InterPro:IPR000928), Target SNARE coiled-coil region (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30); SNAP receptor (TAIR:AT1G13890.1); Has 578 Blast hits to 578 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 428; Fungi - 36; Plants - 81; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT5G61210.1p  transcript_id AT5G61210.1  protein_id AT5G61210.1p  transcript_id AT5G61210.1  
At5g61220	chr5:024626057	0.0	C/24626057-24626320	AT5G61220.1  CDS  gene_syn MAF19.16, MAF19_16  go_function catalytic activity|GO:0003824||ISS  product complex 1 family protein / LVR family protein  note complex 1 family protein / LVR family protein; FUNCTIONS IN: catalytic activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 172 Blast hits to 172 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 75; Fungi - 63; Plants - 29; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G61220.1p  transcript_id AT5G61220.1  protein_id AT5G61220.1p  transcript_id AT5G61220.1  
At5g61228	chr5:024627892	0.0	W/24627892-24628017	AT5G61228.1  CDS  gene_syn CPuORF15, Conserved peptide upstream open reading frame 15  gene CPuORF15  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF15 represents a conserved upstream opening reading frame relative to major ORF AT5G61230.1  go_component endomembrane system|GO:0012505||IEA  product CPuORF15 (Conserved peptide upstream open reading frame 15)  note Conserved peptide upstream open reading frame 15 (CPuORF15); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: CPuORF16 (Conserved peptide upstream open reading frame 16) (TAIR:AT5G07842.1); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G61228.1p  transcript_id AT5G61228.1  protein_id AT5G61228.1p  transcript_id AT5G61228.1  
At5g61230	chr5:024628254	0.0	W/24628254-24628778	AT5G61230.1  CDS  gene_syn MAF19.22, MAF19_22  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT5G07840.1); Has 42256 Blast hits to 15828 proteins in 634 species: Archae - 41; Bacteria - 2448; Metazoa - 25218; Fungi - 2462; Plants - 1301; Viruses - 368; Other Eukaryotes - 10418 (source: NCBI BLink).  protein_id AT5G61230.1p  transcript_id AT5G61230.1  protein_id AT5G61230.1p  transcript_id AT5G61230.1  
At5g61240	chr5:024629485	0.0	W/24629485-24629569,24629916-24630063,24630140-24630211,24630385-24630456,24630669-24630740,24630838-24630981,24631078-24631158,24631257-24631328,24631408-24631479,24631585-24631656,24631868-24631958	AT5G61240.1  CDS  gene_syn MFB13.23, MFB13_23  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT1G13910.1); Has 54870 Blast hits to 18308 proteins in 781 species: Archae - 35; Bacteria - 3366; Metazoa - 15390; Fungi - 767; Plants - 32078; Viruses - 0; Other Eukaryotes - 3234 (source: NCBI BLink).  protein_id AT5G61240.1p  transcript_id AT5G61240.1  protein_id AT5G61240.1p  transcript_id AT5G61240.1  
At5g61250	chr5:024634382	0.0	C/24634382-24634597,24634244-24634280,24633982-24634165,24633764-24633912,24633424-24633657,24633157-24633346,24632957-24633082,24632760-24632859,24632294-24632677	AT5G61250.1  CDS  gene_syn Arabidopsis thaliana glucuronidase 1, AtGUS1, MFB13.2, MFB13_2  gene AtGUS1  function Belongs to the plant glycoside hydrolase family 79. Encodes a protein with several posttranslational modification sites including O-& 946;-GlcNAc attachment sites and serine-, threonine- and tyrosine-phosphorylation sites, suggesting that this protein is extensively modified posttranslationally. The protein is predicted (WoLF PSORT program) to be secreted.  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_function beta-glucuronidase activity|GO:0004566|17498920|ISS  go_function beta-glucuronidase activity|GO:0004566||ISS  product AtGUS1 (Arabidopsis thaliana glucuronidase 1); beta-glucuronidase  note Arabidopsis thaliana glucuronidase 1 (AtGUS1); FUNCTIONS IN: beta-glucuronidase activity; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase family 79, N-terminal (InterPro:IPR005199); BEST Arabidopsis thaliana protein match is: AtGUS2 (Arabidopsis thaliana glucuronidase 2); beta-glucuronidase (TAIR:AT5G07830.1); Has 253 Blast hits to 250 proteins in 53 species: Archae - 0; Bacteria - 25; Metazoa - 130; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT5G61250.1p  transcript_id AT5G61250.1  protein_id AT5G61250.1p  transcript_id AT5G61250.1  
At5g61250	chr5:024634382	0.0	C/24634382-24634597,24634244-24634280,24633982-24634165,24633764-24633912,24633424-24633657,24633157-24633346,24632957-24633082,24632760-24632859,24632294-24632677	AT5G61250.2  CDS  gene_syn Arabidopsis thaliana glucuronidase 1, AtGUS1, MFB13.2, MFB13_2  gene AtGUS1  function Belongs to the plant glycoside hydrolase family 79. Encodes a protein with several posttranslational modification sites including O-& 946;-GlcNAc attachment sites and serine-, threonine- and tyrosine-phosphorylation sites, suggesting that this protein is extensively modified posttranslationally. The protein is predicted (WoLF PSORT program) to be secreted.  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_function beta-glucuronidase activity|GO:0004566|17498920|ISS  go_function beta-glucuronidase activity|GO:0004566||ISS  product AtGUS1 (Arabidopsis thaliana glucuronidase 1); beta-glucuronidase  note Arabidopsis thaliana glucuronidase 1 (AtGUS1); FUNCTIONS IN: beta-glucuronidase activity; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase family 79, N-terminal (InterPro:IPR005199); BEST Arabidopsis thaliana protein match is: AtGUS2 (Arabidopsis thaliana glucuronidase 2); beta-glucuronidase (TAIR:AT5G07830.1); Has 253 Blast hits to 250 proteins in 53 species: Archae - 0; Bacteria - 25; Metazoa - 130; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT5G61250.2p  transcript_id AT5G61250.2  protein_id AT5G61250.2p  transcript_id AT5G61250.2  
At5g61260	chr5:024637109	0.0	W/24637109-24638599	AT5G61260.1  CDS  gene_syn MFB13.3, MFB13_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product chromosome scaffold protein-related  note chromosome scaffold protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Calmodulin-binding, plant (InterPro:IPR012417); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G07820.1); Has 3060 Blast hits to 2222 proteins in 246 species: Archae - 3; Bacteria - 285; Metazoa - 1576; Fungi - 200; Plants - 173; Viruses - 6; Other Eukaryotes - 817 (source: NCBI BLink).  protein_id AT5G61260.1p  transcript_id AT5G61260.1  protein_id AT5G61260.1p  transcript_id AT5G61260.1  
At5g61270	chr5:024639873	0.0	C/24639873-24640031,24639691-24639795,24639559-24639624,24639081-24639464,24638873-24638995	AT5G61270.2  CDS  gene_syn MFB13.4, MFB13_4, PHYTOCHROME-INTERACTING FACTOR7, PIF7  gene PIF7  function Basic helix-loop-helix (bHLH) phytochrome interacting factor. Interacts specifically with the far-red light absorbing Pfr form of phyB through a conserved domain called the active phyB binding motif. Upon light exposure, PIF7 rapidly migrates to intranuclear speckles, where it colocalizes with phyB. Role as negative regulator of phyB-mediated seedling deetiolation.  go_component nuclear speck|GO:0016607|18252845|IDA  go_process response to light stimulus|GO:0009416|18252845|IDA  go_process de-etiolation|GO:0009704|18252845|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function double-stranded DNA binding|GO:0003690|18252845|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700|18252845|IDA  go_function transcription factor activity|GO:0003700||ISS  product PIF7 (PHYTOCHROME-INTERACTING FACTOR7); DNA binding / double-stranded DNA binding / transcription factor  note PHYTOCHROME-INTERACTING FACTOR7 (PIF7); FUNCTIONS IN: double-stranded DNA binding, transcription factor activity, DNA binding; INVOLVED IN: de-etiolation, response to light stimulus, regulation of transcription; LOCATED IN: nuclear speck; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: UNE10 (unfertilized embryo sac 10); DNA binding / transcription factor (TAIR:AT4G00050.1); Has 10916 Blast hits to 7104 proteins in 366 species: Archae - 0; Bacteria - 146; Metazoa - 4101; Fungi - 991; Plants - 1935; Viruses - 14; Other Eukaryotes - 3729 (source: NCBI BLink).  protein_id AT5G61270.2p  transcript_id AT5G61270.2  protein_id AT5G61270.2p  transcript_id AT5G61270.2  
At5g61270	chr5:024640438	0.0	C/24640438-24640439,24639873-24640293,24639691-24639795,24639559-24639624,24639081-24639464,24638873-24638995	AT5G61270.1  CDS  gene_syn MFB13.4, MFB13_4, PHYTOCHROME-INTERACTING FACTOR7, PIF7  gene PIF7  function Basic helix-loop-helix (bHLH) phytochrome interacting factor. Interacts specifically with the far-red light absorbing Pfr form of phyB through a conserved domain called the active phyB binding motif. Upon light exposure, PIF7 rapidly migrates to intranuclear speckles, where it colocalizes with phyB. Role as negative regulator of phyB-mediated seedling deetiolation.  go_component nuclear speck|GO:0016607|18252845|IDA  go_process response to light stimulus|GO:0009416|18252845|IDA  go_process de-etiolation|GO:0009704|18252845|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function double-stranded DNA binding|GO:0003690|18252845|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700|18252845|IDA  go_function transcription factor activity|GO:0003700||ISS  product PIF7 (PHYTOCHROME-INTERACTING FACTOR7); DNA binding / double-stranded DNA binding / transcription factor  note PHYTOCHROME-INTERACTING FACTOR7 (PIF7); FUNCTIONS IN: double-stranded DNA binding, transcription factor activity, DNA binding; INVOLVED IN: de-etiolation, response to light stimulus, regulation of transcription; LOCATED IN: nuclear speck; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: UNE10 (unfertilized embryo sac 10); DNA binding / transcription factor (TAIR:AT4G00050.1); Has 10922 Blast hits to 7136 proteins in 366 species: Archae - 0; Bacteria - 146; Metazoa - 4096; Fungi - 990; Plants - 1941; Viruses - 14; Other Eukaryotes - 3735 (source: NCBI BLink).  protein_id AT5G61270.1p  transcript_id AT5G61270.1  protein_id AT5G61270.1p  transcript_id AT5G61270.1  
At5g61280	chr5:024644879	0.0	C/24644879-24644910,24644701-24644762,24644339-24644602,24644083-24644233,24643912-24643993,24643625-24643825	AT5G61280.1  CDS  gene_syn MFB13.5, MFB13_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product remorin family protein  note remorin family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal region (InterPro:IPR005516); BEST Arabidopsis thaliana protein match is: remorin family protein (TAIR:AT1G13920.1); Has 424 Blast hits to 383 proteins in 51 species: Archae - 0; Bacteria - 7; Metazoa - 59; Fungi - 7; Plants - 185; Viruses - 0; Other Eukaryotes - 166 (source: NCBI BLink).  protein_id AT5G61280.1p  transcript_id AT5G61280.1  protein_id AT5G61280.1p  transcript_id AT5G61280.1  
At5g61290	chr5:024648599	0.0	W/24648599-24649169,24649271-24649341,24649428-24649586,24649670-24649752,24649957-24650092,24650187-24650360,24650456-24650647	AT5G61290.1  CDS  gene_syn MFB13.9, MFB13_9  go_function flavin-containing monooxygenase activity|GO:0004499||IEA  go_function FAD binding|GO:0050660||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_component cellular_component|GO:0005575||ND  go_function monooxygenase activity|GO:0004497||ISS  product flavin-containing monooxygenase family protein / FMO family protein  note flavin-containing monooxygenase family protein / FMO family protein; FUNCTIONS IN: NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960); BEST Arabidopsis thaliana protein match is: flavin-containing monooxygenase family protein / FMO family protein (TAIR:AT5G07800.1); Has 7774 Blast hits to 7536 proteins in 872 species: Archae - 64; Bacteria - 3210; Metazoa - 875; Fungi - 752; Plants - 426; Viruses - 0; Other Eukaryotes - 2447 (source: NCBI BLink).  protein_id AT5G61290.1p  transcript_id AT5G61290.1  protein_id AT5G61290.1p  transcript_id AT5G61290.1  
At5g61300	chr5:024652618	0.0	C/24652618-24652776,24651961-24652504,24650905-24651875	AT5G61300.1  CDS  gene_syn MFB13.7, MFB13_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G07790.1); Has 101 Blast hits to 93 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 12; Plants - 69; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G61300.1p  transcript_id AT5G61300.1  protein_id AT5G61300.1p  transcript_id AT5G61300.1  
At5g61310	chr5:024653543	0.0	C/24653543-24653737	AT5G61310.1  CDS  gene_syn MFB13.16, MFB13_16  go_component mitochondrial respiratory chain|GO:0005746||IEA  go_component endomembrane system|GO:0012505||IEA  go_function cytochrome-c oxidase activity|GO:0004129||IEA  go_function cytochrome-c oxidase activity|GO:0004129||ISS  product cytochrome c oxidase subunit Vc, putative / COX5C, putative  note cytochrome c oxidase subunit Vc, putative / COX5C, putative; FUNCTIONS IN: cytochrome-c oxidase activity; LOCATED IN: mitochondrial respiratory chain, endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase subunit Vc (InterPro:IPR008432); BEST Arabidopsis thaliana protein match is: cytochrome c oxidase subunit Vc family protein / COX5C family protein (TAIR:AT2G47380.1); Has 60 Blast hits to 60 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G61310.1p  transcript_id AT5G61310.1  protein_id AT5G61310.1p  transcript_id AT5G61310.1  
At5g61310	chr5:024653543	0.0	C/24653543-24653737	AT5G61310.2  CDS  gene_syn MFB13.16, MFB13_16  go_component mitochondrial respiratory chain|GO:0005746||IEA  go_component endomembrane system|GO:0012505||IEA  go_function cytochrome-c oxidase activity|GO:0004129||IEA  go_function cytochrome-c oxidase activity|GO:0004129||ISS  product cytochrome c oxidase subunit Vc, putative / COX5C, putative  note cytochrome c oxidase subunit Vc, putative / COX5C, putative; FUNCTIONS IN: cytochrome-c oxidase activity; LOCATED IN: mitochondrial respiratory chain, endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase subunit Vc (InterPro:IPR008432); BEST Arabidopsis thaliana protein match is: cytochrome c oxidase subunit Vc family protein / COX5C family protein (TAIR:AT2G47380.1); Has 60 Blast hits to 60 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G61310.2p  transcript_id AT5G61310.2  protein_id AT5G61310.2p  transcript_id AT5G61310.2  
At5g61310	chr5:024653543	0.0	C/24653543-24653737	AT5G61310.3  CDS  gene_syn MFB13.16, MFB13_16  go_component mitochondrial respiratory chain|GO:0005746||IEA  go_component endomembrane system|GO:0012505||IEA  go_function cytochrome-c oxidase activity|GO:0004129||IEA  go_function cytochrome-c oxidase activity|GO:0004129||ISS  product cytochrome c oxidase subunit Vc, putative / COX5C, putative  note cytochrome c oxidase subunit Vc, putative / COX5C, putative; FUNCTIONS IN: cytochrome-c oxidase activity; LOCATED IN: mitochondrial respiratory chain, endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase subunit Vc (InterPro:IPR008432); BEST Arabidopsis thaliana protein match is: cytochrome c oxidase subunit Vc family protein / COX5C family protein (TAIR:AT2G47380.1); Has 60 Blast hits to 60 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G61310.3p  transcript_id AT5G61310.3  protein_id AT5G61310.3p  transcript_id AT5G61310.3  
At5g61310	chr5:024653543	0.0	C/24653543-24653737	AT5G61310.4  CDS  gene_syn MFB13.16, MFB13_16  go_component mitochondrial respiratory chain|GO:0005746||IEA  go_component endomembrane system|GO:0012505||IEA  go_function cytochrome-c oxidase activity|GO:0004129||IEA  go_function cytochrome-c oxidase activity|GO:0004129||ISS  product cytochrome c oxidase subunit Vc, putative / COX5C, putative  note cytochrome c oxidase subunit Vc, putative / COX5C, putative; FUNCTIONS IN: cytochrome-c oxidase activity; LOCATED IN: mitochondrial respiratory chain, endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase subunit Vc (InterPro:IPR008432); BEST Arabidopsis thaliana protein match is: cytochrome c oxidase subunit Vc family protein / COX5C family protein (TAIR:AT2G47380.1); Has 60 Blast hits to 60 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G61310.4p  transcript_id AT5G61310.4  protein_id AT5G61310.4p  transcript_id AT5G61310.4  
At5g61320	chr5:024655677	0.0	C/24655677-24656638,24655098-24655629	AT5G61320.1  CDS  gene_syn CYP89A3, MFB13.19, MFB13_19  gene CYP89A3  function member of CYP89A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP89A3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP89A3; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, cotyledon, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, putative (TAIR:AT2G12190.1); Has 22383 Blast hits to 22319 proteins in 1193 species: Archae - 21; Bacteria - 2136; Metazoa - 9968; Fungi - 3838; Plants - 5387; Viruses - 3; Other Eukaryotes - 1030 (source: NCBI BLink).  protein_id AT5G61320.1p  transcript_id AT5G61320.1  protein_id AT5G61320.1p  transcript_id AT5G61320.1  
At5g61330	chr5:024660023	0.0	C/24660023-24660103,24659634-24659938,24659214-24659286,24659007-24659081,24658819-24658929,24658666-24658708,24658503-24658581,24658248-24658350,24658067-24658162,24657921-24657953,24657717-24657816,24657506-24657590,24657287-24657413	AT5G61330.1  CDS  gene_syn MFB13.10, MFB13_10  go_component nucleus|GO:0005634||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product rRNA processing protein-related  note rRNA processing protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAUB (InterPro:IPR012617); Has 79462 Blast hits to 32481 proteins in 1301 species: Archae - 395; Bacteria - 15286; Metazoa - 26196; Fungi - 9575; Plants - 3170; Viruses - 1014; Other Eukaryotes - 23826 (source: NCBI BLink).  protein_id AT5G61330.1p  transcript_id AT5G61330.1  protein_id AT5G61330.1p  transcript_id AT5G61330.1  
At5g61340	chr5:024662064	0.0	C/24662064-24663044	AT5G61340.1  CDS  gene_syn MFB13.11, MFB13_11  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26650.1); Has 39 Blast hits to 39 proteins in 9 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G61340.1p  transcript_id AT5G61340.1  protein_id AT5G61340.1p  transcript_id AT5G61340.1  
At5g61345	chr5:024667282	0.0	W/24667282-24667353	AT5G61345.1  tRNA  gene_syn 67899.TRNA-LYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Lys (anticodon: TTT)  transcript_id AT5G61345.1  
At5g61350	chr5:024667973	0.0	W/24667973-24670501	AT5G61350.1  CDS  gene_syn MFB13.1, MFB13_1  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, flower, cultured cell; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G21480.1); Has 83788 Blast hits to 82848 proteins in 3239 species: Archae - 48; Bacteria - 7188; Metazoa - 37270; Fungi - 6404; Plants - 18695; Viruses - 355; Other Eukaryotes - 13828 (source: NCBI BLink).  protein_id AT5G61350.1p  transcript_id AT5G61350.1  protein_id AT5G61350.1p  transcript_id AT5G61350.1  
At5g61360	chr5:024671051	0.0	W/24671051-24671611,24671726-24671797	AT5G61360.1  CDS  gene_syn MFB13.14, MFB13_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G07730.1); Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G61360.1p  transcript_id AT5G61360.1  protein_id AT5G61360.1p  transcript_id AT5G61360.1  
At5g61370	chr5:024672008	0.0	C/24672008-24673471	AT5G61370.1  CDS  gene_syn MFB13.15, MFB13_15  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G60960.1); Has 9373 Blast hits to 3230 proteins in 109 species: Archae - 1; Bacteria - 0; Metazoa - 33; Fungi - 73; Plants - 9019; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).  protein_id AT5G61370.1p  transcript_id AT5G61370.1  protein_id AT5G61370.1p  transcript_id AT5G61370.1  
At5g61380	chr5:024675540	0.0	W/24675540-24675672,24675990-24676151,24676288-24676421,24676572-24676739,24676824-24676977,24677071-24678176	AT5G61380.1  CDS  gene_syn APRR1, MFB13.13, MFB13_13, PRR1, PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, TOC1  gene TOC1  function Pseudo response regulator involved in the generation of circadian rhythms. TOC1 appears to shorten the period of circumnutation speed. TOC1 contributes to the plant fitness (carbon fixation, biomass) by influencing the circadian clock period. PRR3 may increase the stability of TOC1 by preventing interactions between TOC1 and the F-box protein ZTL. Expression of TOC1 is correlated with rhythmic changes in chromatin organization.  go_component nucleus|GO:0005634|10926537|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|10926537|ISS  go_process circadian rhythm|GO:0007623|10926537|IEP  go_process circadian rhythm|GO:0007623|11100772|TAS  go_process circumnutation|GO:0010031|15908440|IMP  go_function two-component response regulator activity|GO:0000156||ISS  go_function transcription regulator activity|GO:0030528|12068096|TAS  product TOC1 (TIMING OF CAB EXPRESSION 1); transcription regulator/ two-component response regulator  note TIMING OF CAB EXPRESSION 1 (TOC1); FUNCTIONS IN: transcription regulator activity, two-component response regulator activity; INVOLVED IN: circumnutation, regulation of transcription, DNA-dependent, circadian rhythm; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver region (InterPro:IPR001789), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: APRR5 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 5); transcription regulator/ two-component response regulator (TAIR:AT5G24470.1); Has 33566 Blast hits to 33248 proteins in 1598 species: Archae - 125; Bacteria - 27389; Metazoa - 17; Fungi - 132; Plants - 1513; Viruses - 0; Other Eukaryotes - 4390 (source: NCBI BLink).  protein_id AT5G61380.1p  transcript_id AT5G61380.1  protein_id AT5G61380.1p  transcript_id AT5G61380.1  
At5g61390	chr5:024680560	0.0	C/24680560-24680857,24680278-24680435,24680054-24680100,24679894-24679957,24679109-24679770,24678802-24679036	AT5G61390.1  CDS  gene_syn MFB13.17, MFB13_17  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function exonuclease activity|GO:0004527||IEA  go_component intracellular|GO:0005622||ISS  go_process biological_process|GO:0008150||ND  go_function exonuclease activity|GO:0004527||ISS  product exonuclease family protein  note exonuclease family protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T and DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: exonuclease family protein (TAIR:AT5G07710.1); Has 728 Blast hits to 724 proteins in 298 species: Archae - 0; Bacteria - 576; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).  protein_id AT5G61390.1p  transcript_id AT5G61390.1  protein_id AT5G61390.1p  transcript_id AT5G61390.1  
At5g61400	chr5:024681550	0.0	W/24681550-24683514	AT5G61400.1  CDS  gene_syn MFB13.18, MFB13_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G02150.1); Has 23589 Blast hits to 5886 proteins in 183 species: Archae - 4; Bacteria - 16; Metazoa - 811; Fungi - 552; Plants - 21122; Viruses - 0; Other Eukaryotes - 1084 (source: NCBI BLink).  protein_id AT5G61400.1p  transcript_id AT5G61400.1  protein_id AT5G61400.1p  transcript_id AT5G61400.1  
At5g61410	chr5:024685727	0.0	C/24685727-24685836,24685329-24685443,24685113-24685253,24684906-24685019,24684740-24684818,24684541-24684650,24684409-24684465,24684228-24684297,24684085-24684134	AT5G61410.1  CDS  gene_syn D-RIBULOSE-5-PHOSPHATE-3-EPIMERASE, RPE, emb2728, embryo defective 2728  gene RPE  function Arabidopsis thaliana ribulose-5-phosphate-3-epimerase mRNA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function catalytic activity|GO:0003824||IEA  go_function ribulose-phosphate 3-epimerase activity|GO:0004750||IEA  go_component stromule|GO:0010319|16923014|IDA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_process response to cold|GO:0009409|16923014|IEP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function ribulose-phosphate 3-epimerase activity|GO:0004750||ISS  product RPE; catalytic/ ribulose-phosphate 3-epimerase  note RPE; FUNCTIONS IN: ribulose-phosphate 3-epimerase activity, catalytic activity; INVOLVED IN: embryonic development ending in seed dormancy, response to cold, carbohydrate metabolic process; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate 3-epimerase (InterPro:IPR000056), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative (TAIR:AT3G01850.2); Has 6218 Blast hits to 6217 proteins in 1424 species: Archae - 33; Bacteria - 2879; Metazoa - 154; Fungi - 90; Plants - 83; Viruses - 0; Other Eukaryotes - 2979 (source: NCBI BLink).  protein_id AT5G61410.1p  transcript_id AT5G61410.1  protein_id AT5G61410.1p  transcript_id AT5G61410.1  
At5g61410	chr5:024685727	0.0	C/24685727-24685836,24685329-24685443,24685113-24685253,24684906-24685019,24684740-24684818,24684541-24684650,24684409-24684465,24684228-24684297,24684085-24684134	AT5G61410.2  CDS  gene_syn D-RIBULOSE-5-PHOSPHATE-3-EPIMERASE, RPE, emb2728, embryo defective 2728  gene RPE  function Arabidopsis thaliana ribulose-5-phosphate-3-epimerase mRNA  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function catalytic activity|GO:0003824||IEA  go_function ribulose-phosphate 3-epimerase activity|GO:0004750||IEA  go_component stromule|GO:0010319|16923014|IDA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_process response to cold|GO:0009409|16923014|IEP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function ribulose-phosphate 3-epimerase activity|GO:0004750||ISS  product RPE; catalytic/ ribulose-phosphate 3-epimerase  note RPE; FUNCTIONS IN: ribulose-phosphate 3-epimerase activity, catalytic activity; INVOLVED IN: embryonic development ending in seed dormancy, response to cold, carbohydrate metabolic process; LOCATED IN: thylakoid, apoplast, stromule, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate 3-epimerase (InterPro:IPR000056), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative (TAIR:AT3G01850.2); Has 6218 Blast hits to 6217 proteins in 1424 species: Archae - 33; Bacteria - 2879; Metazoa - 154; Fungi - 90; Plants - 83; Viruses - 0; Other Eukaryotes - 2979 (source: NCBI BLink).  protein_id AT5G61410.2p  transcript_id AT5G61410.2  protein_id AT5G61410.2p  transcript_id AT5G61410.2  
At5g61412	chr5:024686761	0.0	C/24686761-24686994	AT5G61412.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 15569 Blast hits to 5647 proteins in 601 species: Archae - 8; Bacteria - 4540; Metazoa - 4784; Fungi - 783; Plants - 3384; Viruses - 322; Other Eukaryotes - 1748 (source: NCBI BLink).  protein_id AT5G61412.1p  transcript_id AT5G61412.1  protein_id AT5G61412.1p  transcript_id AT5G61412.1  
At5g61420	chr5:024690453	0.0	C/24690453-24690478,24689475-24690312	AT5G61420.1  CDS  gene_syn AtMYB28, HAG1, HIGH ALIPHATIC GLUCOSINOLATE 1, MFB13.22, MFB13_22, MYB28, PMG1, PRODUCTION OF METHIONINE-DERIVED GLUCOSINOLATE 1, myb domain protein 28  gene MYB28  function Encodes a putative transcription factor (MYB28).  go_component nucleus|GO:0005634|17521412|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|11597504|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process cellular response to sulfur starvation|GO:0010438|17420480|TAS  go_process regulation of glucosinolate biosynthetic process|GO:0010439|17420480|IMP  go_process regulation of glucosinolate biosynthetic process|GO:0010439|17521412|IMP  go_process regulation of transcription|GO:0045449|17420480|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|17420480|NAS  product MYB28 (myb domain protein 28); DNA binding / transcription factor  note myb domain protein 28 (MYB28); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 9 processes; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: ATMYB29 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 29); DNA binding / transcription factor (TAIR:AT5G07690.1); Has 4590 Blast hits to 3452 proteins in 252 species: Archae - 0; Bacteria - 79; Metazoa - 720; Fungi - 103; Plants - 2827; Viruses - 3; Other Eukaryotes - 858 (source: NCBI BLink).  protein_id AT5G61420.1p  transcript_id AT5G61420.1  protein_id AT5G61420.1p  transcript_id AT5G61420.1  
At5g61420	chr5:024690663	0.0	C/24690663-24690795,24690453-24690582,24689475-24690312	AT5G61420.2  CDS  gene_syn AtMYB28, HAG1, HIGH ALIPHATIC GLUCOSINOLATE 1, MFB13.22, MFB13_22, MYB28, PMG1, PRODUCTION OF METHIONINE-DERIVED GLUCOSINOLATE 1, myb domain protein 28  gene MYB28  function Encodes a putative transcription factor (MYB28).  go_component nucleus|GO:0005634|17521412|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|11597504|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process cellular response to sulfur starvation|GO:0010438|17420480|TAS  go_process regulation of glucosinolate biosynthetic process|GO:0010439|17420480|IMP  go_process regulation of glucosinolate biosynthetic process|GO:0010439|17521412|IMP  go_process regulation of transcription|GO:0045449|17420480|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|17420480|NAS  product MYB28 (myb domain protein 28); DNA binding / transcription factor  note myb domain protein 28 (MYB28); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 9 processes; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: ATMYB29 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 29); DNA binding / transcription factor (TAIR:AT5G07690.1); Has 7657 Blast hits to 6068 proteins in 374 species: Archae - 0; Bacteria - 79; Metazoa - 1147; Fungi - 379; Plants - 3746; Viruses - 3; Other Eukaryotes - 2303 (source: NCBI BLink).  protein_id AT5G61420.2p  transcript_id AT5G61420.2  protein_id AT5G61420.2p  transcript_id AT5G61420.2  
At5g61430	chr5:024702367	0.0	C/24702367-24702553,24701959-24702236,24701328-24701873	AT5G61430.1  CDS  gene_syn ANAC100, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 100, ATNAC5, MFB13.6, MFB13_6  gene ANAC100  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ANAC100 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 100); transcription factor  note ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 100 (ANAC100); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC080 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 80); transcription factor (TAIR:AT5G07680.1); Has 1683 Blast hits to 1681 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1683; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G61430.1p  transcript_id AT5G61430.1  protein_id AT5G61430.1p  transcript_id AT5G61430.1  
At5g61440	chr5:024707658	0.0	W/24707658-24707843,24707946-24708137,24708227-24708391,24708490-24708684	AT5G61440.1  CDS  gene_syn ACHT5, ATYPICAL CYS HIS RICH THIOREDOXIN 5  gene ACHT5  function Encodes a member of the thioredoxin family protein. Located in the chloroplast.  go_process cell redox homeostasis|GO:0045454||IEA  go_component chloroplast|GO:0009507|19109414|IDA  product ACHT5 (ATYPICAL CYS HIS RICH THIOREDOXIN 5)  note ATYPICAL CYS HIS RICH THIOREDOXIN 5 (ACHT5); INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4); oxidoreductase, acting on sulfur group of donors, disulfide as acceptor (TAIR:AT1G08570.2); Has 1748 Blast hits to 1748 proteins in 327 species: Archae - 6; Bacteria - 185; Metazoa - 697; Fungi - 208; Plants - 394; Viruses - 3; Other Eukaryotes - 255 (source: NCBI BLink).  protein_id AT5G61440.1p  transcript_id AT5G61440.1  protein_id AT5G61440.1p  transcript_id AT5G61440.1  
At5g61445	chr5:024709666	0.0	W/24709666-24709738	AT5G61445.1  tRNA  gene_syn 67899.TRNA-ALA-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: AGC)  transcript_id AT5G61445.1  
At5g61450	chr5:024712715	0.0	C/24712715-24712882,24712536-24712619,24712360-24712433,24712234-24712267,24712091-24712149,24711889-24712003,24711764-24711801,24711559-24711656,24711388-24711443,24711053-24711302,24710828-24710949,24710682-24710738,24710529-24710594,24710378-24710452,24710240-24710287	AT5G61450.1  CDS  gene_syn MCI2.1  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product 2-phosphoglycerate kinase-related  note 2-phosphoglycerate kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; Has 393 Blast hits to 372 proteins in 106 species: Archae - 58; Bacteria - 24; Metazoa - 63; Fungi - 40; Plants - 52; Viruses - 0; Other Eukaryotes - 156 (source: NCBI BLink).  protein_id AT5G61450.1p  transcript_id AT5G61450.1  protein_id AT5G61450.1p  transcript_id AT5G61450.1  
At5g61455	chr5:024713264	0.0	C/24713264-24714094	AT5G61455.1  snRNA  gene_syn 67899.SNRNA00001, U2.7  gene U2.7  go_component snRNP U2|GO:0005686||TAS  go_process nuclear mRNA cis splicing, via spliceosome|GO:0045292||TAS  go_function RNA splicing factor activity, transesterification mechanism|GO:0031202||TAS  product U2.7; snRNA  note gi|17666|emb|X06477.1|ATU27 Arabidopsis thaliana U2 RNA gene (U2.7)  transcript_id AT5G61455.1  
At5g61460	chr5:024721685	0.0	C/24721685-24721841,24721335-24721440,24721012-24721145,24720771-24720826,24720584-24720670,24720189-24720509,24719680-24719799,24719270-24719404,24719039-24719115,24718867-24718942,24718668-24718742,24718458-24718562,24718133-24718302,24717927-24718029,24717713-24717825,24717080-24717281,24716803-24716934,24716603-24716717,24716388-24716473,24716216-24716311,24715776-24715912,24715582-24715684,24715418-24715497,24715219-24715297,24715076-24715133,24714884-24714981,24714701-24714795,24714551-24714608	AT5G61460.1  CDS  gene_syn ATRAD18, MCI2.2, MCI2_2, MIM, hypersensitive to MMS, irradiation and MMC  gene MIM  function Encodes a protein closely related to the structural maintenance of chromosomes (SMC) family involved in structural changes in chromosomes.  go_component chromosome|GO:0005694||IEA  go_function ATP binding|GO:0005524||IEA  go_component nucleus|GO:0005634||ISS  go_process double-strand break repair|GO:0006302|19070688|IMP  go_process chromosome segregation|GO:0007059||ISS  go_function ATP binding|GO:0005524||ISS  product MIM (hypersensitive to MMS, irradiation and MMC); ATP binding  note hypersensitive to MMS, irradiation and MMC (MIM); FUNCTIONS IN: ATP binding; INVOLVED IN: double-strand break repair, chromosome segregation; LOCATED IN: chromosome, nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: structural maintenance of chromosomes (SMC) family protein (TAIR:AT5G07660.1); Has 68052 Blast hits to 34141 proteins in 1837 species: Archae - 950; Bacteria - 8382; Metazoa - 33183; Fungi - 4546; Plants - 1836; Viruses - 227; Other Eukaryotes - 18928 (source: NCBI BLink).  protein_id AT5G61460.1p  transcript_id AT5G61460.1  protein_id AT5G61460.1p  transcript_id AT5G61460.1  
At5g61470	chr5:024722870	0.0	W/24722870-24723784	AT5G61470.1  CDS  gene_syn MCI2.3, MCI2_3  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT3G60580.1); Has 5397 Blast hits to 3601 proteins in 301 species: Archae - 4; Bacteria - 573; Metazoa - 2253; Fungi - 379; Plants - 585; Viruses - 87; Other Eukaryotes - 1516 (source: NCBI BLink).  protein_id AT5G61470.1p  transcript_id AT5G61470.1  protein_id AT5G61470.1p  transcript_id AT5G61470.1  
At5g61480	chr5:024725157	0.0	C/24725157-24727842,24724541-24724980	AT5G61480.1  CDS  gene_syn MCI2.4, MCI2_4  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT4G28650.1); Has 154767 Blast hits to 102654 proteins in 3479 species: Archae - 88; Bacteria - 11871; Metazoa - 60822; Fungi - 7776; Plants - 53263; Viruses - 368; Other Eukaryotes - 20579 (source: NCBI BLink).  protein_id AT5G61480.1p  transcript_id AT5G61480.1  protein_id AT5G61480.1p  transcript_id AT5G61480.1  
At5g61490	chr5:024732642	0.0	W/24732642-24732907,24732986-24733157,24733247-24733331,24733407-24733666	AT5G61490.1  CDS  gene_syn K11J9.2, K11J9_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP012943 (InterPro:IPR016606); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25170.1); Has 61 Blast hits to 61 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G61490.1p  transcript_id AT5G61490.1  protein_id AT5G61490.1p  transcript_id AT5G61490.1  
At5g61495	chr5:024733391	0.0	C/24733391-24733485,24733114-24733318,24732768-24732899	AT5G61495.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT5G61495.1p  transcript_id AT5G61495.1  protein_id AT5G61495.1p  transcript_id AT5G61495.1  
At5g61500	chr5:024736551	0.0	C/24736551-24736711,24736023-24736093,24735820-24735936,24735576-24735739,24735210-24735295,24735047-24735098,24734641-24734706,24734385-24734512,24734216-24734312	AT5G61500.1  CDS  gene_syn ATATG3, ATG3, K11J9.1, K11J9_1  gene ATG3  go_component cellular_component|GO:0005575||ND  go_process autophagy|GO:0006914||ISS  go_function molecular_function|GO:0003674||ND  product ATG3  note ATG3; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: autophagy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Autophagocytosis associated protein, C-terminal (InterPro:IPR007135), Autophagocytosis associated protein, N-terminal (InterPro:IPR007134); Has 348 Blast hits to 341 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 114; Plants - 34; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT5G61500.1p  transcript_id AT5G61500.1  protein_id AT5G61500.1p  transcript_id AT5G61500.1  
At5g61510	chr5:024738688	0.0	C/24738688-24738975,24738201-24738342,24737891-24738117,24737473-24737730,24737084-24737389	AT5G61510.1  CDS  gene_syn K11J9.5, K11J9_5  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process response to high light intensity|GO:0009644|18212028|IEP  go_process cell differentiation|GO:0030154|8069107|IEP  product NADP-dependent oxidoreductase, putative  note NADP-dependent oxidoreductase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: cell differentiation, response to high light intensity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: oxidoreductase, zinc-binding dehydrogenase family protein (TAIR:AT4G21580.1); Has 25836 Blast hits to 25732 proteins in 1605 species: Archae - 308; Bacteria - 13515; Metazoa - 1363; Fungi - 2062; Plants - 829; Viruses - 3; Other Eukaryotes - 7756 (source: NCBI BLink).  protein_id AT5G61510.1p  transcript_id AT5G61510.1  protein_id AT5G61510.1p  transcript_id AT5G61510.1  
At5g61520	chr5:024740504	0.0	C/24740504-24740833,24739358-24740428	AT5G61520.2  CDS  gene_syn K11J9.8, K11J9_8  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product hexose transporter, putative  note hexose transporter, putative; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: STP4 (SUGAR TRANSPORTER 4); carbohydrate transmembrane transporter/ monosaccharide transmembrane transporter/ sucrose:hydrogen symporter/ sugar:hydrogen symporter (TAIR:AT3G19930.1); Has 15693 Blast hits to 15383 proteins in 1062 species: Archae - 192; Bacteria - 5788; Metazoa - 3009; Fungi - 4322; Plants - 1490; Viruses - 0; Other Eukaryotes - 892 (source: NCBI BLink).  protein_id AT5G61520.2p  transcript_id AT5G61520.2  protein_id AT5G61520.2p  transcript_id AT5G61520.2  
At5g61520	chr5:024741040	0.0	C/24741040-24741175,24740504-24740841,24739358-24740428	AT5G61520.1  CDS  gene_syn K11J9.8, K11J9_8  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product hexose transporter, putative  note hexose transporter, putative; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: carbohydrate transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT4G21480.1); Has 15753 Blast hits to 15439 proteins in 1066 species: Archae - 196; Bacteria - 5810; Metazoa - 3012; Fungi - 4336; Plants - 1482; Viruses - 0; Other Eukaryotes - 917 (source: NCBI BLink).  protein_id AT5G61520.1p  transcript_id AT5G61520.1  protein_id AT5G61520.1p  transcript_id AT5G61520.1  
At5g61530	chr5:024742630	0.0	W/24742630-24742690,24742776-24743038,24743149-24743211,24743297-24743315,24743493-24743591,24743684-24743761,24743834-24744051,24744194-24744350,24744441-24744586	AT5G61530.2  CDS  gene_syn K11J9.10, K11J9_10  go_component intracellular|GO:0005622||IEA  go_process signal transduction|GO:0007165||IEA  go_function Rho GTPase activator activity|GO:0005100||ISS  product small G protein family protein / RhoGAP family protein  note small G protein family protein / RhoGAP family protein; FUNCTIONS IN: Rho GTPase activator activity; INVOLVED IN: signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rho GTPase activation protein (InterPro:IPR008936), RhoGAP (InterPro:IPR000198); Has 2903 Blast hits to 2903 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 2432; Fungi - 289; Plants - 21; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink).  protein_id AT5G61530.2p  transcript_id AT5G61530.2  protein_id AT5G61530.2p  transcript_id AT5G61530.2  
At5g61530	chr5:024742630	0.0	W/24742630-24742690,24742776-24743038,24743149-24743211,24743297-24743315,24743493-24743591,24743684-24743761,24743834-24744078,24744194-24744350,24744441-24744586	AT5G61530.1  CDS  gene_syn K11J9.10, K11J9_10  go_component intracellular|GO:0005622||IEA  go_process signal transduction|GO:0007165||IEA  go_function Rho GTPase activator activity|GO:0005100||ISS  product small G protein family protein / RhoGAP family protein  note small G protein family protein / RhoGAP family protein; FUNCTIONS IN: Rho GTPase activator activity; INVOLVED IN: signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rho GTPase activation protein (InterPro:IPR008936), RhoGAP (InterPro:IPR000198); Has 3741 Blast hits to 3740 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 3033; Fungi - 439; Plants - 24; Viruses - 0; Other Eukaryotes - 245 (source: NCBI BLink).  protein_id AT5G61530.1p  transcript_id AT5G61530.1  protein_id AT5G61530.1p  transcript_id AT5G61530.1  
At5g61540	chr5:024744994	0.0	W/24744994-24745056,24745460-24745631,24745718-24745782,24745881-24746276,24746353-24746411,24746609-24746713,24746923-24747142	AT5G61540.1  CDS  gene_syn K11J9.7, K11J9_7  go_component endomembrane system|GO:0012505||IEA  go_function hydrolase activity|GO:0016787||IEA  go_process glycoprotein catabolic process|GO:0006516||ISS  go_function asparaginase activity|GO:0004067||ISS  product L-asparaginase, putative / L-asparagine amidohydrolase, putative  note L-asparaginase, putative / L-asparagine amidohydrolase, putative; FUNCTIONS IN: asparaginase activity, hydrolase activity; INVOLVED IN: glycoprotein catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase T2, asparaginase 2 (InterPro:IPR000246); BEST Arabidopsis thaliana protein match is: L-asparaginase, putative / L-asparagine amidohydrolase, putative (TAIR:AT3G16150.1); Has 2155 Blast hits to 2134 proteins in 513 species: Archae - 73; Bacteria - 884; Metazoa - 426; Fungi - 64; Plants - 94; Viruses - 0; Other Eukaryotes - 614 (source: NCBI BLink).  protein_id AT5G61540.1p  transcript_id AT5G61540.1  protein_id AT5G61540.1p  transcript_id AT5G61540.1  
At5g61540	chr5:024745887	0.0	W/24745887-24746276,24746353-24746411,24746609-24746713,24746923-24747142	AT5G61540.2  CDS  gene_syn K11J9.7, K11J9_7  go_function hydrolase activity|GO:0016787||IEA  go_process glycoprotein catabolic process|GO:0006516||ISS  go_function asparaginase activity|GO:0004067||ISS  product L-asparaginase, putative / L-asparagine amidohydrolase, putative  note L-asparaginase, putative / L-asparagine amidohydrolase, putative; FUNCTIONS IN: asparaginase activity, hydrolase activity; INVOLVED IN: glycoprotein catabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase T2, asparaginase 2 (InterPro:IPR000246); BEST Arabidopsis thaliana protein match is: L-asparaginase, putative / L-asparagine amidohydrolase, putative (TAIR:AT3G16150.1); Has 1929 Blast hits to 1924 proteins in 485 species: Archae - 67; Bacteria - 813; Metazoa - 380; Fungi - 47; Plants - 88; Viruses - 0; Other Eukaryotes - 534 (source: NCBI BLink).  protein_id AT5G61540.2p  transcript_id AT5G61540.2  protein_id AT5G61540.2p  transcript_id AT5G61540.2  
At5g61540	chr5:024745887	0.0	W/24745887-24746276,24746353-24746411,24746609-24746713,24746923-24747142	AT5G61540.3  CDS  gene_syn K11J9.7, K11J9_7  go_function hydrolase activity|GO:0016787||IEA  go_process glycoprotein catabolic process|GO:0006516||ISS  go_function asparaginase activity|GO:0004067||ISS  product L-asparaginase, putative / L-asparagine amidohydrolase, putative  note L-asparaginase, putative / L-asparagine amidohydrolase, putative; FUNCTIONS IN: asparaginase activity, hydrolase activity; INVOLVED IN: glycoprotein catabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase T2, asparaginase 2 (InterPro:IPR000246); BEST Arabidopsis thaliana protein match is: L-asparaginase, putative / L-asparagine amidohydrolase, putative (TAIR:AT3G16150.1); Has 1929 Blast hits to 1924 proteins in 485 species: Archae - 67; Bacteria - 813; Metazoa - 380; Fungi - 47; Plants - 88; Viruses - 0; Other Eukaryotes - 534 (source: NCBI BLink).  protein_id AT5G61540.3p  transcript_id AT5G61540.3  protein_id AT5G61540.3p  transcript_id AT5G61540.3  
At5g61550	chr5:024748325	0.0	W/24748325-24748529,24748633-24748754,24748849-24749149,24749227-24749666,24749790-24749891,24749979-24750407,24750525-24751280,24751376-24751558	AT5G61550.1  CDS  gene_syn K11J9.12, K11J9_12  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), U box (InterPro:IPR003613), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G25160.1); Has 80316 Blast hits to 79100 proteins in 3051 species: Archae - 62; Bacteria - 7459; Metazoa - 34503; Fungi - 6039; Plants - 18359; Viruses - 274; Other Eukaryotes - 13620 (source: NCBI BLink).  protein_id AT5G61550.1p  transcript_id AT5G61550.1  protein_id AT5G61550.1p  transcript_id AT5G61550.1  
At5g61560	chr5:024753476	0.0	W/24753476-24753611,24753697-24753818,24753894-24754015,24754085-24754260,24754329-24754648,24754731-24754832,24754916-24755353,24755440-24756228,24756321-24756506	AT5G61560.1  CDS  gene_syn K11J9.9, K11J9_9  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), U box (InterPro:IPR003613), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G25160.1); Has 81557 Blast hits to 79849 proteins in 3219 species: Archae - 73; Bacteria - 7391; Metazoa - 35580; Fungi - 5941; Plants - 18417; Viruses - 272; Other Eukaryotes - 13883 (source: NCBI BLink).  protein_id AT5G61560.1p  transcript_id AT5G61560.1  protein_id AT5G61560.1p  transcript_id AT5G61560.1  
At5g61570	chr5:024758507	0.0	W/24758507-24759026,24759636-24760201	AT5G61570.1  CDS  gene_syn K11J9.21, K11J9_21  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G07620.1); Has 59545 Blast hits to 58987 proteins in 1637 species: Archae - 24; Bacteria - 4287; Metazoa - 26828; Fungi - 3744; Plants - 15478; Viruses - 188; Other Eukaryotes - 8996 (source: NCBI BLink).  protein_id AT5G61570.1p  transcript_id AT5G61570.1  protein_id AT5G61570.1p  transcript_id AT5G61570.1  
At5g61570	chr5:024758507	0.0	W/24758507-24759026,24759645-24760201	AT5G61570.2  CDS  gene_syn K11J9.21, K11J9_21  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G07620.1); Has 59209 Blast hits to 58648 proteins in 1632 species: Archae - 24; Bacteria - 4371; Metazoa - 26535; Fungi - 3648; Plants - 15424; Viruses - 178; Other Eukaryotes - 9029 (source: NCBI BLink).  protein_id AT5G61570.2p  transcript_id AT5G61570.2  protein_id AT5G61570.2p  transcript_id AT5G61570.2  
At5g61580	chr5:024761150	0.0	W/24761150-24761404,24761540-24761586,24761673-24761712,24761795-24761857,24761936-24762232,24762333-24762386,24762466-24762534,24762622-24762751,24762826-24762866,24762953-24763177,24763268-24763316,24763403-24763557,24763660-24763827	AT5G61580.1  CDS  gene_syn K11J9.3, K11J9_3, PFK4, PHOSPHOFRUCTOKINASE 4  gene PFK4  go_component 6-phosphofructokinase complex|GO:0005945||ISS  go_component chloroplast|GO:0009507|17485088|IDA  go_process glycolysis|GO:0006096|17485088|IDA  go_process glycolysis|GO:0006096||ISS  go_function 6-phosphofructokinase activity|GO:0003872|17485088|IDA  go_function 6-phosphofructokinase activity|GO:0003872||ISS  product PFK4 (PHOSPHOFRUCTOKINASE 4); 6-phosphofructokinase  note PHOSPHOFRUCTOKINASE 4 (PFK4); FUNCTIONS IN: 6-phosphofructokinase activity; INVOLVED IN: glycolysis; LOCATED IN: 6-phosphofructokinase complex, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase TP0108 (InterPro:IPR012004), Phosphofructokinase (InterPro:IPR000023); BEST Arabidopsis thaliana protein match is: PFK3 (PHOSPHOFRUCTOKINASE 3); 6-phosphofructokinase (TAIR:AT4G26270.1); Has 4811 Blast hits to 4479 proteins in 1155 species: Archae - 20; Bacteria - 2585; Metazoa - 536; Fungi - 204; Plants - 225; Viruses - 2; Other Eukaryotes - 1239 (source: NCBI BLink).  protein_id AT5G61580.1p  transcript_id AT5G61580.1  protein_id AT5G61580.1p  transcript_id AT5G61580.1  
At5g61580	chr5:024761150	0.0	W/24761150-24761404,24761540-24761586,24761673-24761712,24761795-24761857,24761936-24762232,24762333-24762386,24762466-24762534,24762622-24762751,24762826-24762866,24762953-24763177,24763268-24763316,24763403-24763557,24763663-24763827	AT5G61580.2  CDS  gene_syn K11J9.3, K11J9_3, PFK4, PHOSPHOFRUCTOKINASE 4  gene PFK4  go_component 6-phosphofructokinase complex|GO:0005945||ISS  go_component chloroplast|GO:0009507|17485088|IDA  go_process glycolysis|GO:0006096|17485088|IDA  go_process glycolysis|GO:0006096||ISS  go_function 6-phosphofructokinase activity|GO:0003872|17485088|IDA  go_function 6-phosphofructokinase activity|GO:0003872||ISS  product PFK4 (PHOSPHOFRUCTOKINASE 4); 6-phosphofructokinase  note PHOSPHOFRUCTOKINASE 4 (PFK4); FUNCTIONS IN: 6-phosphofructokinase activity; INVOLVED IN: glycolysis; LOCATED IN: 6-phosphofructokinase complex, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase TP0108 (InterPro:IPR012004), Phosphofructokinase (InterPro:IPR000023); BEST Arabidopsis thaliana protein match is: PFK3 (PHOSPHOFRUCTOKINASE 3); 6-phosphofructokinase (TAIR:AT4G26270.1); Has 4810 Blast hits to 4478 proteins in 1155 species: Archae - 20; Bacteria - 2585; Metazoa - 536; Fungi - 204; Plants - 225; Viruses - 2; Other Eukaryotes - 1238 (source: NCBI BLink).  protein_id AT5G61580.2p  transcript_id AT5G61580.2  protein_id AT5G61580.2p  transcript_id AT5G61580.2  
At5g61590	chr5:024764653	0.0	C/24764653-24765258	AT5G61590.1  CDS  gene_syn K11J9.4, K11J9_4  function encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to water deprivation|GO:0009414|18552355|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9687012|TAS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor family protein  note AP2 domain-containing transcription factor family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to water deprivation, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT5G07580.1); Has 3943 Blast hits to 3720 proteins in 203 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3931; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT5G61590.1p  transcript_id AT5G61590.1  protein_id AT5G61590.1p  transcript_id AT5G61590.1  
At5g61600	chr5:024766643	0.0	C/24766643-24767368	AT5G61600.1  CDS  gene_syn K11J9.13, K11J9_13  function encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product ethylene-responsive element-binding family protein  note ethylene-responsive element-binding family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT5G51190.1); Has 3760 Blast hits to 3640 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3751; Viruses - 2; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G61600.1p  transcript_id AT5G61600.1  protein_id AT5G61600.1p  transcript_id AT5G61600.1  
At5g61605	chr5:024768891	0.0	C/24768891-24768954,24768616-24768800	AT5G61605.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16505.1); Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G61605.1p  transcript_id AT5G61605.1  protein_id AT5G61605.1p  transcript_id AT5G61605.1  
At5g61610	chr5:024770099	0.0	W/24770099-24770346,24770484-24770901,24771034-24771252	AT5G61610.1  CDS  gene_syn K11J9.14, K11J9_14  go_component endomembrane system|GO:0012505||IEA  go_component monolayer-surrounded lipid storage body|GO:0012511||IEA  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  go_process lipid storage|GO:0019915||ISS  product unknown protein  note INVOLVED IN: lipid storage; LOCATED IN: monolayer-surrounded lipid storage body, endomembrane system, integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136); Has 6250 Blast hits to 2851 proteins in 405 species: Archae - 6; Bacteria - 1198; Metazoa - 1427; Fungi - 369; Plants - 513; Viruses - 103; Other Eukaryotes - 2634 (source: NCBI BLink).  protein_id AT5G61610.1p  transcript_id AT5G61610.1  protein_id AT5G61610.1p  transcript_id AT5G61610.1  
At5g61620	chr5:024772383	0.0	W/24772383-24772701,24772775-24772986,24773085-24773507	AT5G61620.1  CDS  gene_syn K11J9.15, K11J9_15  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Zinc finger, CCHC-type (InterPro:IPR001878), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT5G47390.1); Has 825 Blast hits to 824 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 0; Plants - 719; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT5G61620.1p  transcript_id AT5G61620.1  protein_id AT5G61620.1p  transcript_id AT5G61620.1  
At5g61630	chr5:024774259	0.0	C/24774259-24774502,24773803-24774002	AT5G61630.1  CDS  gene_syn K11J9.16, K11J9_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G07490.1); Has 24 Blast hits to 24 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G61630.1p  transcript_id AT5G61630.1  protein_id AT5G61630.1p  transcript_id AT5G61630.1  
At5g61640	chr5:024775107	0.0	W/24775107-24775463,24775896-24776147	AT5G61640.1  CDS  gene_syn K11J9.18, K11J9_18, PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1, PMSR1  gene PMSR1  function ubiquitous enzyme that repairs oxidatively damaged proteins  go_function oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor|GO:0016671||IEA  go_component cellular_component|GO:0005575||ND  go_process protein modification process|GO:0006464||ISS  go_process response to oxidative stress|GO:0006979||NAS  go_function peptide-methionine-(S)-S-oxide reductase activity|GO:0008113||ISS  product PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1); oxidoreductase, acting on sulfur group of donors, disulfide as acceptor / peptide-methionine-(S)-S-oxide reductase  note PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1 (PMSR1); FUNCTIONS IN: peptide-methionine-(S)-S-oxide reductase activity, oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: response to oxidative stress, protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methionine sulphoxide reductase A (InterPro:IPR002569); BEST Arabidopsis thaliana protein match is: PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3); oxidoreductase, acting on sulfur group of donors, disulfide as acceptor / peptide-methionine-(S)-S-oxide reductase (TAIR:AT5G07470.1); Has 7163 Blast hits to 7161 proteins in 1356 species: Archae - 86; Bacteria - 3333; Metazoa - 164; Fungi - 91; Plants - 128; Viruses - 1; Other Eukaryotes - 3360 (source: NCBI BLink).  protein_id AT5G61640.1p  transcript_id AT5G61640.1  protein_id AT5G61640.1p  transcript_id AT5G61640.1  
At5g61650	chr5:024778265	0.0	W/24778265-24778629,24778725-24779019	AT5G61650.1  CDS  gene_syn CYCLIN P4;2, CYCP4, CYCP4;2, K11J9.17, K11J9_17  gene CYCP4;2  function The P-type cyclins (CYCPs) share a conserved central region of 100 amino acids ( cyclin box ) displaying homology to the corresponding region of the PHO80 cyclin from Saccharomyces cerevisiae and the related G1 cyclins from Trypanosoma cruzi and T. brucei.  go_component cellular_component|GO:0005575||ND  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase activity|GO:0004693||ISS  product CYCP4;2 (CYCLIN P4;2); cyclin-dependent protein kinase  note CYCLIN P4;2 (CYCP4;2); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Negative regulatory factor PREG (InterPro:IPR012389), Cyclin-like (InterPro:IPR011028), Cyclin, N-terminal (InterPro:IPR006671), Cyclin-related 2 (InterPro:IPR013922), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCP4;3 (cyclin p4;3); cyclin-dependent protein kinase (TAIR:AT5G07450.1); Has 935 Blast hits to 933 proteins in 165 species: Archae - 0; Bacteria - 16; Metazoa - 156; Fungi - 417; Plants - 127; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).  protein_id AT5G61650.1p  transcript_id AT5G61650.1  protein_id AT5G61650.1p  transcript_id AT5G61650.1  
At5g61660	chr5:024779458	0.0	C/24779458-24779862	AT5G61660.1  CDS  gene_syn K11J9.19, K11J9_19  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; Has 68671 Blast hits to 18602 proteins in 1218 species: Archae - 50; Bacteria - 23690; Metazoa - 22777; Fungi - 4290; Plants - 7324; Viruses - 820; Other Eukaryotes - 9720 (source: NCBI BLink).  protein_id AT5G61660.1p  transcript_id AT5G61660.1  protein_id AT5G61660.1p  transcript_id AT5G61660.1  
At5g61670	chr5:024783629	0.0	W/24783629-24783813,24783909-24784023,24784099-24784215,24784299-24784385,24784472-24784548,24784674-24784801,24784907-24785043,24785124-24785201	AT5G61670.1  CDS  gene_syn K11J9.20, K11J9_20  function Encodes a close homolog of the Cauliflower OR (Orange) protein. The function of OR is to induce the differentiation of proplastids or other noncolored plastids into chromoplasts for carotenoid accumulation. Both proteins contain a Cysteine-rich zinc finger domain that is highly specific to DnaJ-like molecular chaperons.  go_component plastid|GO:0009536|17172359|ISS  go_process chromoplast organization|GO:0009661|17172359|ISS  go_process carotene biosynthetic process|GO:0016120|17172359|ISS  product unknown protein  note INVOLVED IN: chromoplast organization, carotene biosynthetic process; LOCATED IN: plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: chaperone protein dnaJ-related (TAIR:AT5G06130.2); Has 70 Blast hits to 70 proteins in 15 species: Archae - 0; Bacteria - 4; Metazoa - 3; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G61670.1p  transcript_id AT5G61670.1  protein_id AT5G61670.1p  transcript_id AT5G61670.1  
At5g61670	chr5:024783629	0.0	W/24783629-24783813,24783909-24784023,24784099-24784215,24784299-24784385,24784472-24784548,24784674-24784801,24784907-24785043,24785124-24785201	AT5G61670.2  CDS  gene_syn K11J9.20, K11J9_20  function Encodes a close homolog of the Cauliflower OR (Orange) protein. The function of OR is to induce the differentiation of proplastids or other noncolored plastids into chromoplasts for carotenoid accumulation. Both proteins contain a Cysteine-rich zinc finger domain that is highly specific to DnaJ-like molecular chaperons.  go_component plastid|GO:0009536|17172359|ISS  go_process chromoplast organization|GO:0009661|17172359|ISS  go_process carotene biosynthetic process|GO:0016120|17172359|ISS  product unknown protein  note INVOLVED IN: chromoplast organization, carotene biosynthetic process; LOCATED IN: plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: chaperone protein dnaJ-related (TAIR:AT5G06130.2); Has 70 Blast hits to 70 proteins in 15 species: Archae - 0; Bacteria - 4; Metazoa - 3; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G61670.2p  transcript_id AT5G61670.2  protein_id AT5G61670.2p  transcript_id AT5G61670.2  
At5g61680	chr5:024787884	0.0	C/24787884-24788015,24787348-24787626,24786997-24787203,24786666-24786904,24786416-24786575	AT5G61680.1  CDS  gene_syn K11J9.6, K11J9_6  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: PPME1; pectinesterase (TAIR:AT1G69940.1); Has 1198 Blast hits to 1167 proteins in 171 species: Archae - 0; Bacteria - 243; Metazoa - 1; Fungi - 130; Plants - 824; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G61680.1p  transcript_id AT5G61680.1  protein_id AT5G61680.1p  transcript_id AT5G61680.1  
At5g61690	chr5:024793119	0.0	C/24793119-24793487,24792454-24793047,24792271-24792366,24792016-24792177,24791738-24791897,24791440-24791636,24791187-24791304,24791025-24791101,24790858-24790947,24790632-24790757,24790234-24790524,24789817-24790164,24789495-24789731	AT5G61690.1  CDS  gene_syn ATATH15, K11J9.22, K11J9_22  gene ATATH15  function member of ATH subfamily  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ATATH15; ATPase, coupled to transmembrane movement of substances / transporter  note ATATH15; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; CONTAINS InterPro DOMAIN/s: ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATATH11; ATPase, coupled to transmembrane movement of substances / transporter (TAIR:AT5G61730.1); Has 164802 Blast hits to 157551 proteins in 2362 species: Archae - 3480; Bacteria - 118767; Metazoa - 4632; Fungi - 1507; Plants - 1285; Viruses - 4; Other Eukaryotes - 35127 (source: NCBI BLink).  protein_id AT5G61690.1p  transcript_id AT5G61690.1  protein_id AT5G61690.1p  transcript_id AT5G61690.1  
At5g61700	chr5:024793864	0.0	W/24793864-24793935,24794022-24794432,24794532-24794664,24794839-24794958,24795048-24795175,24795257-24795415,24795499-24795574,24795662-24795787,24795884-24795967,24796051-24796388,24796474-24796674,24796752-24796861,24796950-24797034,24797145-24797273,24797359-24797464,24797556-24797944	AT5G61700.1  CDS  gene_syn ATATH16, K11J9.11, K11J9_11  gene ATATH16  function member of ATH subfamily  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ATATH16; ATPase, coupled to transmembrane movement of substances / transporter  note ATATH16; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATATH14; ATPase, coupled to transmembrane movement of substances / transporter (TAIR:AT5G61740.1); Has 233201 Blast hits to 213987 proteins in 2591 species: Archae - 4340; Bacteria - 159662; Metazoa - 7527; Fungi - 3568; Plants - 2604; Viruses - 14; Other Eukaryotes - 55486 (source: NCBI BLink).  protein_id AT5G61700.1p  transcript_id AT5G61700.1  protein_id AT5G61700.1p  transcript_id AT5G61700.1  
At5g61710	chr5:024800045	0.0	W/24800045-24800512	AT5G61710.1  CDS  gene_syn MAC9.2, MAC9_2  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: male gametophyte, sepal, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02160.1); Has 13 Blast hits to 13 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G61710.1p  transcript_id AT5G61710.1  protein_id AT5G61710.1p  transcript_id AT5G61710.1  
At5g61720	chr5:024801621	0.0	W/24801621-24801971,24802077-24802610,24802719-24803006	AT5G61720.1  CDS  gene_syn MAC9.3, MAC9_3  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1216 (InterPro:IPR009605); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28830.1); Has 57 Blast hits to 30 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G61720.1p  transcript_id AT5G61720.1  protein_id AT5G61720.1p  transcript_id AT5G61720.1  
At5g61730	chr5:024807530	0.0	C/24807530-24807898,24807200-24807431,24806900-24807078,24806628-24806813,24806437-24806532,24806146-24806346,24805905-24806064,24805610-24805806,24805368-24805485,24805194-24805270,24805000-24805089,24804758-24804901,24804372-24804644,24804204-24804284,24803945-24804121,24803583-24803825	AT5G61730.1  CDS  gene_syn ATATH11, MAC9.4, MAC9_4  gene ATATH11  function member of ATH subfamily  go_component plasma membrane|GO:0005886|17317660|IDA  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ATATH11; ATPase, coupled to transmembrane movement of substances / transporter  note ATATH11; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATATH15; ATPase, coupled to transmembrane movement of substances / transporter (TAIR:AT5G61690.1); Has 221155 Blast hits to 205014 proteins in 2556 species: Archae - 4276; Bacteria - 152523; Metazoa - 6895; Fungi - 3007; Plants - 2251; Viruses - 9; Other Eukaryotes - 52194 (source: NCBI BLink).  protein_id AT5G61730.1p  transcript_id AT5G61730.1  protein_id AT5G61730.1p  transcript_id AT5G61730.1  
At5g61740	chr5:024808484	0.0	W/24808484-24808555,24808744-24808972,24809048-24809127,24809225-24809357,24809469-24809588,24809672-24809790,24809881-24810039,24810139-24810214,24810296-24810427,24810516-24810599,24810687-24811009,24811089-24811289,24811370-24811479,24811577-24811661,24811731-24811859,24811948-24812053,24812209-24812597	AT5G61740.1  CDS  gene_syn ATATH14, MAC9.5, MAC9_5  gene ATATH14  function member of ATH subfamily  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ATATH14; ATPase, coupled to transmembrane movement of substances / transporter  note ATATH14; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATATH16; ATPase, coupled to transmembrane movement of substances / transporter (TAIR:AT5G61700.1); Has 228385 Blast hits to 211175 proteins in 2581 species: Archae - 4327; Bacteria - 156874; Metazoa - 7049; Fungi - 3338; Plants - 2396; Viruses - 16; Other Eukaryotes - 54385 (source: NCBI BLink).  protein_id AT5G61740.1p  transcript_id AT5G61740.1  protein_id AT5G61740.1p  transcript_id AT5G61740.1  
At5g61750	chr5:024812804	0.0	C/24812804-24813436	AT5G61750.1  CDS  gene_syn MAC9.10, MAC9_10  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process response to salt stress|GO:0009651|11351099|IEP  product cupin family protein  note cupin family protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: inflorescence meristem, hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: germin-like protein, putative (TAIR:AT5G39180.1); Has 832 Blast hits to 831 proteins in 72 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 18; Plants - 805; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G61750.1p  transcript_id AT5G61750.1  protein_id AT5G61750.1p  transcript_id AT5G61750.1  
At5g61760	chr5:024813916	0.0	C/24813916-24814818	AT5G61760.1  CDS  gene_syn ATIPK2BETA, INOSITOL POLYPHOSPHATE KINASE 2 BETA, IPK2B, MAC9.7, MAC9_7  gene ATIPK2BETA  function Encodes an inositol polyphosphate 3-/6-/5-kinase that is localized to the nucleus. Able to complement a mutation in a yeast transcriptional regulator gene (ARG82/IPK2).  go_component nucleus|GO:0005634|12566584|IDA  go_process myo-inositol hexakisphosphate biosynthetic process|GO:0010264|16107538|IMP  go_process regulation of transcription|GO:0045449|12566584|TAS  go_function inositol trisphosphate 6-kinase activity|GO:0000823|12226109|IDA  go_function inositol or phosphatidylinositol kinase activity|GO:0004428|12566584|IDA  go_function inositol or phosphatidylinositol kinase activity|GO:0004428||ISS  product ATIPK2BETA; inositol or phosphatidylinositol kinase/ inositol trisphosphate 6-kinase  note ATIPK2BETA; FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, inositol trisphosphate 6-kinase activity; INVOLVED IN: myo-inositol hexakisphosphate biosynthetic process, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate kinase (InterPro:IPR005522); BEST Arabidopsis thaliana protein match is: IPK2a (INOSITOL POLYPHOSPHATE KINASE 2 ALPHA); inositol or phosphatidylinositol kinase/ inositol trisphosphate 6-kinase (TAIR:AT5G07370.4); Has 582 Blast hits to 582 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 313; Fungi - 143; Plants - 45; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).  protein_id AT5G61760.1p  transcript_id AT5G61760.1  protein_id AT5G61760.1p  transcript_id AT5G61760.1  
At5g61770	chr5:024815888	0.0	W/24815888-24815905,24815997-24816182,24816301-24816531,24816612-24816704,24816803-24816990,24817086-24817279,24817365-24817495	AT5G61770.2  CDS  gene_syn MAC9.8, MAC9_8, PETER PAN-LIKE PROTEIN, PPAN  gene PPAN  go_component cellular_component|GO:0005575||ND  product PPAN (PETER PAN-LIKE PROTEIN)  note PETER PAN-LIKE PROTEIN (PPAN); LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); Has 1801 Blast hits to 1193 proteins in 174 species: Archae - 0; Bacteria - 32; Metazoa - 1148; Fungi - 148; Plants - 45; Viruses - 38; Other Eukaryotes - 390 (source: NCBI BLink).  protein_id AT5G61770.2p  transcript_id AT5G61770.2  protein_id AT5G61770.2p  transcript_id AT5G61770.2  
At5g61770	chr5:024815888	0.0	W/24815888-24815905,24815997-24816182,24816301-24816531,24816612-24816704,24816803-24816990,24817086-24817279,24817365-24817495	AT5G61770.3  CDS  gene_syn MAC9.8, MAC9_8, PETER PAN-LIKE PROTEIN, PPAN  gene PPAN  go_component cellular_component|GO:0005575||ND  product PPAN (PETER PAN-LIKE PROTEIN)  note PETER PAN-LIKE PROTEIN (PPAN); LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); Has 1801 Blast hits to 1193 proteins in 174 species: Archae - 0; Bacteria - 32; Metazoa - 1148; Fungi - 148; Plants - 45; Viruses - 38; Other Eukaryotes - 390 (source: NCBI BLink).  protein_id AT5G61770.3p  transcript_id AT5G61770.3  protein_id AT5G61770.3p  transcript_id AT5G61770.3  
At5g61770	chr5:024815888	0.0	W/24815888-24815905,24815997-24816182,24816301-24816531,24816612-24816704,24816803-24816990,24817086-24817279,24817368-24817495	AT5G61770.1  CDS  gene_syn MAC9.8, MAC9_8, PETER PAN-LIKE PROTEIN, PPAN  gene PPAN  go_component cellular_component|GO:0005575||ND  product PPAN (PETER PAN-LIKE PROTEIN)  note PETER PAN-LIKE PROTEIN (PPAN); LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); Has 981 Blast hits to 846 proteins in 170 species: Archae - 0; Bacteria - 10; Metazoa - 561; Fungi - 131; Plants - 34; Viruses - 19; Other Eukaryotes - 226 (source: NCBI BLink).  protein_id AT5G61770.1p  transcript_id AT5G61770.1  protein_id AT5G61770.1p  transcript_id AT5G61770.1  
At5g61780	chr5:024822012	0.0	W/24822012-24822170,24822282-24822356,24822457-24822573,24822673-24822780,24823066-24823272,24823361-24823576,24823658-24823765,24824018-24824188,24824281-24824478,24824565-24825131,24825227-24825421,24825506-24825586,24825699-24825893,24825987-24826364,24826459-24826641	AT5G61780.1  CDS  gene_syn MAC9.14, MAC9_14  go_component RNA-induced silencing complex|GO:0016442||IEA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function nucleic acid binding|GO:0003676||IEA  go_function protein binding|GO:0005515||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function nucleic acid binding|GO:0003676||ISS  go_function nuclease activity|GO:0004518||ISS  product tudor domain-containing protein / nuclease family protein  note tudor domain-containing protein / nuclease family protein; FUNCTIONS IN: protein binding, hydrolase activity, acting on ester bonds, nuclease activity, nucleic acid binding; INVOLVED IN: response to cadmium ion; LOCATED IN: RNA-induced silencing complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Staphylococcal nuclease (SNase-like) (InterPro:IPR006021), RNA-induced silencing complex, nuclease component Tudor-SN (InterPro:IPR016685), Staphylococcal nuclease (SNase-like), OB-fold (InterPro:IPR016071), Tudor subgroup (InterPro:IPR018351), Tudor (InterPro:IPR002999), Maternal tudor protein (InterPro:IPR008191); BEST Arabidopsis thaliana protein match is: tudor domain-containing protein / nuclease family protein (TAIR:AT5G07350.2); Has 981 Blast hits to 616 proteins in 147 species: Archae - 0; Bacteria - 20; Metazoa - 665; Fungi - 126; Plants - 50; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).  protein_id AT5G61780.1p  transcript_id AT5G61780.1  protein_id AT5G61780.1p  transcript_id AT5G61780.1  
At5g61790	chr5:024829556	0.0	C/24829556-24829642,24829386-24829455,24827959-24829088,24827789-24827860,24827601-24827711,24827394-24827516	AT5G61790.1  CDS  gene_syn MAC9.15, MAC9_15  go_component mitochondrion|GO:0005739|15276431|IDA  go_component vacuole|GO:0005773|14760709|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process protein folding|GO:0006457||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component microsome|GO:0005792|8454626|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  product calnexin 1 (CNX1)  note calnexin 1 (CNX1); FUNCTIONS IN: unfolded protein binding, calcium ion binding; INVOLVED IN: protein folding; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Calreticulin/calnexin, P (InterPro:IPR009033), Calreticulin/calnexin (InterPro:IPR001580), Calreticulin/calnexin, conserved site (InterPro:IPR018124), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320); BEST Arabidopsis thaliana protein match is: calnexin, putative (TAIR:AT5G07340.1); Has 1344 Blast hits to 1252 proteins in 297 species: Archae - 2; Bacteria - 61; Metazoa - 623; Fungi - 137; Plants - 191; Viruses - 36; Other Eukaryotes - 294 (source: NCBI BLink).  protein_id AT5G61790.1p  transcript_id AT5G61790.1  protein_id AT5G61790.1p  transcript_id AT5G61790.1  
At5g61800	chr5:024830054	0.0	C/24830054-24831553	AT5G61800.1  CDS  gene_syn MAC9.12, MAC9_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G18840.1); Has 13676 Blast hits to 5092 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 67; Plants - 13179; Viruses - 0; Other Eukaryotes - 320 (source: NCBI BLink).  protein_id AT5G61800.1p  transcript_id AT5G61800.1  protein_id AT5G61800.1p  transcript_id AT5G61800.1  
At5g61810	chr5:024832264	0.0	C/24832264-24833002,24832104-24832194,24831843-24832020	AT5G61810.2  CDS  gene_syn MAC9.1, MAC9_1  go_component mitochondrial inner membrane|GO:0005743||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_function calcium ion binding|GO:0005509||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: binding, calcium ion binding; INVOLVED IN: transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: mitochondrial substrate carrier family protein (TAIR:AT5G07320.1); Has 19513 Blast hits to 9889 proteins in 355 species: Archae - 0; Bacteria - 0; Metazoa - 9601; Fungi - 5406; Plants - 2633; Viruses - 5; Other Eukaryotes - 1868 (source: NCBI BLink).  protein_id AT5G61810.2p  transcript_id AT5G61810.2  protein_id AT5G61810.2p  transcript_id AT5G61810.2  
At5g61810	chr5:024833342	0.0	C/24833342-24833735,24832264-24833037,24832104-24832194,24831843-24832020	AT5G61810.1  CDS  gene_syn MAC9.1, MAC9_1  go_component mitochondrial inner membrane|GO:0005743||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function binding|GO:0005488||IEA  go_function calcium ion binding|GO:0005509||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_function calcium ion binding|GO:0005509||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: binding, calcium ion binding; INVOLVED IN: transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), Mitochondrial substrate carrier (InterPro:IPR001993), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248), Mitochondrial carrier protein (InterPro:IPR002067), EF-HAND 2 (InterPro:IPR018249), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: mitochondrial substrate carrier family protein (TAIR:AT5G07320.1); Has 24949 Blast hits to 15188 proteins in 1025 species: Archae - 0; Bacteria - 7; Metazoa - 11757; Fungi - 6403; Plants - 3979; Viruses - 5; Other Eukaryotes - 2798 (source: NCBI BLink).  protein_id AT5G61810.1p  transcript_id AT5G61810.1  protein_id AT5G61810.1p  transcript_id AT5G61810.1  
At5g61820	chr5:024835336	0.0	C/24835336-24836223,24835103-24835252,24834752-24835009,24834505-24834636	AT5G61820.1  CDS  gene_syn MAC9.6, MAC9_6  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Stress up-regulated Nod 19 (InterPro:IPR011692); Has 27 Blast hits to 27 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G61820.1p  transcript_id AT5G61820.1  protein_id AT5G61820.1p  transcript_id AT5G61820.1  
At5g61830	chr5:024837335	0.0	W/24837335-24837426,24837765-24838029,24838121-24838315,24838390-24838788	AT5G61830.1  CDS  gene_syn MAC9.11, MAC9_11  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT5G51030.1); Has 51963 Blast hits to 51927 proteins in 1956 species: Archae - 334; Bacteria - 30696; Metazoa - 4832; Fungi - 2627; Plants - 1498; Viruses - 0; Other Eukaryotes - 11976 (source: NCBI BLink).  protein_id AT5G61830.1p  transcript_id AT5G61830.1  protein_id AT5G61830.1p  transcript_id AT5G61830.1  
At5g61835	chr5:024838980	0.0	W/24838980-24839016	AT5G61835.1  tRNA  gene_syn 67902.TRNA-TYR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Tyr (anticodon: GTA)  transcript_id AT5G61835.1  
At5g61840	chr5:024841601	0.0	C/24841601-24841703,24840819-24841207,24840075-24840316,24839365-24839878	AT5G61840.1  CDS  gene_syn GUT1, MAC9.17, MAC9_17  gene GUT1  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component membrane|GO:0016020||ISS  go_process secondary cell wall biogenesis|GO:0009834|18980662|IMP  go_process glucuronoxylan biosynthetic process|GO:0010417|18980662|IMP  go_function catalytic activity|GO:0003824||ISS  go_function glucuronoxylan glucuronosyltransferase activity|GO:0080116|18980662|IMP  product GUT1; catalytic/ glucuronoxylan glucuronosyltransferase  note GUT1; FUNCTIONS IN: glucuronoxylan glucuronosyltransferase activity, catalytic activity; INVOLVED IN: secondary cell wall biogenesis, glucuronoxylan biosynthetic process; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: GUT2; catalytic/ glucuronoxylan glucuronosyltransferase (TAIR:AT1G27440.1); Has 853 Blast hits to 845 proteins in 89 species: Archae - 0; Bacteria - 12; Metazoa - 227; Fungi - 4; Plants - 512; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT5G61840.1p  transcript_id AT5G61840.1  protein_id AT5G61840.1p  transcript_id AT5G61840.1  
At5g61850	chr5:024844295	0.0	W/24844295-24844751,24845222-24845616,24846523-24846933	AT5G61850.1  CDS  gene_syn LEAFY, LEAFY 3, LFY, LFY3, MAC9.13, MAC9_13  gene LFY  function Encodes transcriptional regulator that promotes the transition to flowering.Involved in floral meristem development. LFY is involved in the regulation of AP3 expression, and appears to bring the F-box protein UFO to the AP3 promoter.  go_component nucleus|GO:0005634|9596637|TAS  go_process response to gibberellin stimulus|GO:0009739|16920780|IEP  go_process gibberellic acid mediated signaling|GO:0009740|9596637|TAS  go_process flower development|GO:0009908|11063709|IMP  go_process flower development|GO:0009908|12324613|IMP  go_process maintenance of inflorescence meristem identity|GO:0010077|18298668|IGI  go_function transcription factor activity|GO:0003700|10417387|IDA  go_function transcription factor activity|GO:0003700|9596637|TAS  go_function chromatin DNA binding|GO:0031490|18287201|IDA  go_function sequence-specific DNA binding|GO:0043565|18784751|IDA  product LFY (LEAFY); chromatin DNA binding / sequence-specific DNA binding / transcription factor  note LEAFY (LFY); FUNCTIONS IN: chromatin DNA binding, transcription factor activity, sequence-specific DNA binding; INVOLVED IN: flower development, maintenance of inflorescence meristem identity, response to gibberellin stimulus, gibberellic acid mediated signaling; LOCATED IN: nucleus; EXPRESSED IN: shoot apex, leaf whorl, embryo, flower, seed; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Floricaula/leafy protein (InterPro:IPR002910); Has 1769 Blast hits to 1769 proteins in 759 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 2; Plants - 1758; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G61850.1p  transcript_id AT5G61850.1  protein_id AT5G61850.1p  transcript_id AT5G61850.1  
At5g61865	chr5:024847395	0.0	W/24847395-24847589,24847816-24847923,24847999-24848064,24848731-24849354,24849446-24849706	AT5G61865.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; Has 51 Blast hits to 51 proteins in 26 species: Archae - 3; Bacteria - 6; Metazoa - 23; Fungi - 3; Plants - 4; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT5G61865.1p  transcript_id AT5G61865.1  protein_id AT5G61865.1p  transcript_id AT5G61865.1  
At5g61880	chr5:024850598	0.0	W/24850598-24850600,24850910-24850997,24851135-24851262,24851390-24851512	AT5G61880.1  CDS  gene_syn MAC9.20, MAC9_20  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product signaling molecule-related  note signaling molecule-related; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein Transporter, Pam16 (InterPro:IPR005341); BEST Arabidopsis thaliana protein match is: TXR1 (THAXTOMIN A RESISTANT 1) (TAIR:AT3G59280.1); Has 274 Blast hits to 274 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 149; Fungi - 83; Plants - 37; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G61880.1p  transcript_id AT5G61880.1  protein_id AT5G61880.1p  transcript_id AT5G61880.1  
At5g61880	chr5:024850598	0.0	W/24850598-24850600,24850910-24850997,24851135-24851262,24851390-24851512	AT5G61880.2  CDS  gene_syn MAC9.20, MAC9_20  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product signaling molecule-related  note signaling molecule-related; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein Transporter, Pam16 (InterPro:IPR005341); BEST Arabidopsis thaliana protein match is: TXR1 (THAXTOMIN A RESISTANT 1) (TAIR:AT3G59280.1); Has 274 Blast hits to 274 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 149; Fungi - 83; Plants - 37; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G61880.2p  transcript_id AT5G61880.2  protein_id AT5G61880.2p  transcript_id AT5G61880.2  
At5g61890	chr5:024853498	0.0	C/24853498-24853744,24852639-24853138	AT5G61890.1  CDS  gene_syn K22G18.1, K22G18_1  function encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor family protein  note AP2 domain-containing transcription factor family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT5G07310.1); Has 3924 Blast hits to 3730 proteins in 202 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 3912; Viruses - 2; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G61890.1p  transcript_id AT5G61890.1  protein_id AT5G61890.1p  transcript_id AT5G61890.1  
At5g61900	chr5:024858998	0.0	C/24858998-24859150,24858787-24858834,24858552-24858700,24858421-24858469,24858290-24858346,24857963-24858148,24857735-24857869,24857564-24857625,24857379-24857472,24857182-24857296,24856982-24857058,24856760-24856897,24856497-24856661,24856296-24856409,24856107-24856203,24855908-24856005	AT5G61900.1  CDS  gene_syn BON, BON1, BONZAI 1, COPINE 1, CPN1, K22G18.2, K22G18_2  gene BON1  function Encodes a plasma-membrane localized, copine-like protein, which is a member of a newly identified class of calcium-dependent, phospholipid binding proteins that are present in a wide range of organisms. Mutants exhibit temperature-sensitive growth defects and increased hypersensitive response where permissive conditions are low temperature (22 degrees Celsius) and low humidity. Gene is expressed at 22 but not at 28 (restrictive condition) degrees. Lethality of double mutants with BON3 can be partially suppressed by SNC1. Double mutants show defects in development that are genetically separable from hypersensitive/cell death response.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|11544183|IDA  go_process response to temperature stimulus|GO:0009266|11544183|IEP  go_process response to humidity|GO:0009270|11595798|IMP  go_process plant-type hypersensitive response|GO:0009626||NAS  go_process positive regulation of cellular defense response|GO:0010186||NAS  go_process cellular homeostasis|GO:0019725|11544183|IMP  go_process cellular homeostasis|GO:0019725||NAS  go_process positive regulation of cell size|GO:0045793|11544183|IMP  go_function calcium-dependent phospholipid binding|GO:0005544|11544183|IDA  go_function calcium-dependent phospholipid binding|GO:0005544||ISS  product BON1 (BONZAI 1); calcium-dependent phospholipid binding  note BONZAI 1 (BON1); FUNCTIONS IN: calcium-dependent phospholipid binding; INVOLVED IN: in 6 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Copine (InterPro:IPR010734), C2 calcium-dependent membrane targeting (InterPro:IPR000008), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: BON2 (BONZAI 2); calcium-dependent phospholipid binding (TAIR:AT5G07300.1); Has 1567 Blast hits to 1429 proteins in 99 species: Archae - 0; Bacteria - 4; Metazoa - 1102; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 246 (source: NCBI BLink).  protein_id AT5G61900.1p  transcript_id AT5G61900.1  protein_id AT5G61900.1p  transcript_id AT5G61900.1  
At5g61900	chr5:024858998	0.0	C/24858998-24859150,24858787-24858834,24858552-24858700,24858421-24858469,24858290-24858346,24857963-24858148,24857735-24857869,24857564-24857625,24857379-24857472,24857182-24857296,24856982-24857058,24856760-24856897,24856497-24856661,24856296-24856409,24856107-24856203,24855908-24856005	AT5G61900.3  CDS  gene_syn BON, BON1, BONZAI 1, COPINE 1, CPN1, K22G18.2, K22G18_2  gene BON1  function Encodes a plasma-membrane localized, copine-like protein, which is a member of a newly identified class of calcium-dependent, phospholipid binding proteins that are present in a wide range of organisms. Mutants exhibit temperature-sensitive growth defects and increased hypersensitive response where permissive conditions are low temperature (22 degrees Celsius) and low humidity. Gene is expressed at 22 but not at 28 (restrictive condition) degrees. Lethality of double mutants with BON3 can be partially suppressed by SNC1. Double mutants show defects in development that are genetically separable from hypersensitive/cell death response.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|11544183|IDA  go_process response to temperature stimulus|GO:0009266|11544183|IEP  go_process response to humidity|GO:0009270|11595798|IMP  go_process plant-type hypersensitive response|GO:0009626||NAS  go_process positive regulation of cellular defense response|GO:0010186||NAS  go_process cellular homeostasis|GO:0019725|11544183|IMP  go_process cellular homeostasis|GO:0019725||NAS  go_process positive regulation of cell size|GO:0045793|11544183|IMP  go_function calcium-dependent phospholipid binding|GO:0005544|11544183|IDA  go_function calcium-dependent phospholipid binding|GO:0005544||ISS  product BON1 (BONZAI 1); calcium-dependent phospholipid binding  note BONZAI 1 (BON1); FUNCTIONS IN: calcium-dependent phospholipid binding; INVOLVED IN: in 6 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Copine (InterPro:IPR010734), C2 calcium-dependent membrane targeting (InterPro:IPR000008), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: BON2 (BONZAI 2); calcium-dependent phospholipid binding (TAIR:AT5G07300.1); Has 1567 Blast hits to 1429 proteins in 99 species: Archae - 0; Bacteria - 4; Metazoa - 1102; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 246 (source: NCBI BLink).  protein_id AT5G61900.3p  transcript_id AT5G61900.3  protein_id AT5G61900.3p  transcript_id AT5G61900.3  
At5g61910	chr5:024863319	0.0	C/24863319-24863729,24863115-24863228,24862555-24863000,24861091-24862336	AT5G61910.1  CDS  gene_syn K22G18.3, K22G18_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Development and cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32910.1); Has 4051 Blast hits to 2453 proteins in 312 species: Archae - 1; Bacteria - 477; Metazoa - 1792; Fungi - 482; Plants - 477; Viruses - 8; Other Eukaryotes - 814 (source: NCBI BLink).  protein_id AT5G61910.1p  transcript_id AT5G61910.1  protein_id AT5G61910.1p  transcript_id AT5G61910.1  
At5g61910	chr5:024863319	0.0	C/24863319-24863729,24863115-24863228,24862555-24863000,24861091-24862336	AT5G61910.2  CDS  gene_syn K22G18.3, K22G18_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Development and cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32910.1); Has 4051 Blast hits to 2453 proteins in 312 species: Archae - 1; Bacteria - 477; Metazoa - 1792; Fungi - 482; Plants - 477; Viruses - 8; Other Eukaryotes - 814 (source: NCBI BLink).  protein_id AT5G61910.2p  transcript_id AT5G61910.2  protein_id AT5G61910.2p  transcript_id AT5G61910.2  
At5g61910	chr5:024863319	0.0	C/24863319-24863741,24863115-24863228,24862555-24863000,24861091-24862336	AT5G61910.3  CDS  gene_syn K22G18.3, K22G18_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Development and cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32910.1); Has 4051 Blast hits to 2448 proteins in 312 species: Archae - 1; Bacteria - 479; Metazoa - 1786; Fungi - 481; Plants - 479; Viruses - 8; Other Eukaryotes - 817 (source: NCBI BLink).  protein_id AT5G61910.3p  transcript_id AT5G61910.3  protein_id AT5G61910.3p  transcript_id AT5G61910.3  
At5g61920	chr5:024864830	0.0	W/24864830-24865398,24865481-24865628	AT5G61920.1  CDS  gene_syn K22G18.4, K22G18_4  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 6002 Blast hits to 4675 proteins in 409 species: Archae - 109; Bacteria - 436; Metazoa - 2979; Fungi - 494; Plants - 308; Viruses - 6; Other Eukaryotes - 1670 (source: NCBI BLink).  protein_id AT5G61920.1p  transcript_id AT5G61920.1  protein_id AT5G61920.1p  transcript_id AT5G61920.1  
At5g61920	chr5:024864830	0.0	W/24864830-24865398,24865481-24865628	AT5G61920.2  CDS  gene_syn K22G18.4, K22G18_4  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 6002 Blast hits to 4675 proteins in 409 species: Archae - 109; Bacteria - 436; Metazoa - 2979; Fungi - 494; Plants - 308; Viruses - 6; Other Eukaryotes - 1670 (source: NCBI BLink).  protein_id AT5G61920.2p  transcript_id AT5G61920.2  protein_id AT5G61920.2p  transcript_id AT5G61920.2  
At5g61930	chr5:024867280	0.0	C/24867280-24867665,24866230-24867052	AT5G61930.1  CDS  gene_syn ACCUMULATION OF PHOTOSYSTEM ONE 3, APO3, K22G18.5, K22G18_5  gene APO3  function ACCUMULATION OF PHOTOSYSTEM ONE 3  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product APO3 (ACCUMULATION OF PHOTOSYSTEM ONE 3)  note ACCUMULATION OF PHOTOSYSTEM ONE 3 (APO3); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF794, plant (InterPro:IPR008512); BEST Arabidopsis thaliana protein match is: APO1 (ACCUMULATION OF PHOTOSYSTEM ONE 1) (TAIR:AT1G64810.2); Has 79 Blast hits to 62 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G61930.1p  transcript_id AT5G61930.1  protein_id AT5G61930.1p  transcript_id AT5G61930.1  
At5g61930	chr5:024867280	0.0	C/24867280-24867665,24866230-24867052	AT5G61930.2  CDS  gene_syn ACCUMULATION OF PHOTOSYSTEM ONE 3, APO3, K22G18.5, K22G18_5  gene APO3  function ACCUMULATION OF PHOTOSYSTEM ONE 3  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product APO3 (ACCUMULATION OF PHOTOSYSTEM ONE 3)  note ACCUMULATION OF PHOTOSYSTEM ONE 3 (APO3); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF794, plant (InterPro:IPR008512); BEST Arabidopsis thaliana protein match is: APO1 (ACCUMULATION OF PHOTOSYSTEM ONE 1) (TAIR:AT1G64810.2); Has 79 Blast hits to 62 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G61930.2p  transcript_id AT5G61930.2  protein_id AT5G61930.2p  transcript_id AT5G61930.2  
At5g61940	chr5:024868155	0.0	W/24868155-24870125,24870200-24870328,24870426-24870578,24870809-24870855,24870938-24871098,24871190-24871293,24871394-24871585,24871691-24871768,24871825-24871897,24872064-24872129,24872217-24872350,24872443-24872535,24872634-24872717	AT5G61940.1  CDS  gene_syn K22G18.7, K22G18_7  go_component intracellular|GO:0005622||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_function zinc ion binding|GO:0008270||IEA  product ubiquitin carboxyl-terminal hydrolase-related  note ubiquitin carboxyl-terminal hydrolase-related; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: ubiquitin carboxyl-terminal hydrolase-related (TAIR:AT5G61950.1); Has 375 Blast hits to 347 proteins in 83 species: Archae - 0; Bacteria - 15; Metazoa - 68; Fungi - 36; Plants - 109; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink).  protein_id AT5G61940.1p  transcript_id AT5G61940.1  protein_id AT5G61940.1p  transcript_id AT5G61940.1  
At5g61950	chr5:024873566	0.0	W/24873566-24875512,24875592-24875720,24875818-24875970,24876178-24876224,24876305-24876447,24876538-24876641,24876746-24876943,24877045-24877251,24877341-24877488,24877589-24877722,24877815-24877907,24877998-24878093	AT5G61950.1  CDS  gene_syn K22G18.8, K22G18_8  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  product ubiquitin carboxyl-terminal hydrolase-related  note ubiquitin carboxyl-terminal hydrolase-related; FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: ubiquitin carboxyl-terminal hydrolase-related (TAIR:AT5G61940.1); Has 418 Blast hits to 374 proteins in 90 species: Archae - 0; Bacteria - 27; Metazoa - 124; Fungi - 44; Plants - 101; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT5G61950.1p  transcript_id AT5G61950.1  protein_id AT5G61950.1p  transcript_id AT5G61950.1  
At5g61960	chr5:024883406	0.0	C/24883406-24883483,24883036-24883270,24882467-24882867,24882193-24882351,24881991-24882107,24881774-24881919,24881539-24881621,24881052-24881444,24879980-24880628,24879748-24879832,24879569-24879637,24879303-24879482,24879001-24879153	AT5G61960.1  CDS  gene_syn AML1, ARABIDOPSIS MEI2-LIKE PROTEIN 1, K22G18.10, K22G18_10  gene AML1  function A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML1 is a member of two sister clades of mei2-like gene family, AML1 through AML5 and belongs to the clade named ALM14. AML1 is expressed during early embryo development, particularly along embryonic axis at torpedo stage, in shoot apex (weaker expression) and in the organogenic regions of floral apices.  go_component cellular_component|GO:0005575||ND  go_process positive regulation of meiosis|GO:0045836|9287109|IGI  go_process meristem development|GO:0048507|16473967|IGI  go_function RNA binding|GO:0003723||ISS  go_function protein binding|GO:0005515|15720729|IPI  product AML1 (ARABIDOPSIS MEI2-LIKE PROTEIN 1); RNA binding / protein binding  note ARABIDOPSIS MEI2-LIKE PROTEIN 1 (AML1); FUNCTIONS IN: protein binding, RNA binding; INVOLVED IN: meristem development, positive regulation of meiosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), RNA recognition motif 2 (InterPro:IPR007201), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: AML4 (ARABIDOPSIS MEI2-LIKE 4); RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT5G07290.1); Has 3626 Blast hits to 3357 proteins in 221 species: Archae - 0; Bacteria - 4; Metazoa - 2171; Fungi - 449; Plants - 579; Viruses - 0; Other Eukaryotes - 423 (source: NCBI BLink).  protein_id AT5G61960.1p  transcript_id AT5G61960.1  protein_id AT5G61960.1p  transcript_id AT5G61960.1  
At5g61960	chr5:024883406	0.0	C/24883406-24883483,24883036-24883270,24882467-24882867,24882193-24882351,24881991-24882107,24881774-24881919,24881539-24881621,24881052-24881444,24879980-24880628,24879748-24879832,24879569-24879637,24879303-24879482,24879001-24879153	AT5G61960.2  CDS  gene_syn AML1, ARABIDOPSIS MEI2-LIKE PROTEIN 1, K22G18.10, K22G18_10  gene AML1  function A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML1 is a member of two sister clades of mei2-like gene family, AML1 through AML5 and belongs to the clade named ALM14. AML1 is expressed during early embryo development, particularly along embryonic axis at torpedo stage, in shoot apex (weaker expression) and in the organogenic regions of floral apices.  go_component cellular_component|GO:0005575||ND  go_process positive regulation of meiosis|GO:0045836|9287109|IGI  go_process meristem development|GO:0048507|16473967|IGI  go_function RNA binding|GO:0003723||ISS  go_function protein binding|GO:0005515|15720729|IPI  product AML1 (ARABIDOPSIS MEI2-LIKE PROTEIN 1); RNA binding / protein binding  note ARABIDOPSIS MEI2-LIKE PROTEIN 1 (AML1); FUNCTIONS IN: protein binding, RNA binding; INVOLVED IN: meristem development, positive regulation of meiosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), RNA recognition motif 2 (InterPro:IPR007201), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: AML4 (ARABIDOPSIS MEI2-LIKE 4); RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT5G07290.1); Has 3626 Blast hits to 3357 proteins in 221 species: Archae - 0; Bacteria - 4; Metazoa - 2171; Fungi - 449; Plants - 579; Viruses - 0; Other Eukaryotes - 423 (source: NCBI BLink).  protein_id AT5G61960.2p  transcript_id AT5G61960.2  protein_id AT5G61960.2p  transcript_id AT5G61960.2  
At5g61970	chr5:024888920	0.0	W/24888920-24889013,24889296-24889362,24889454-24889564,24889753-24889948,24890131-24890216,24890289-24890484,24890799-24890910,24891076-24891203,24891379-24891585,24891674-24891783,24892128-24892257,24892405-24892554,24892849-24893079	AT5G61970.1  CDS  gene_syn K22G18.11, K22G18_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product signal recognition particle-related / SRP-related  note signal recognition particle-related / SRP-related; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 286 Blast hits to 286 proteins in 120 species: Archae - 2; Bacteria - 4; Metazoa - 134; Fungi - 62; Plants - 27; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT5G61970.1p  transcript_id AT5G61970.1  protein_id AT5G61970.1p  transcript_id AT5G61970.1  
At5g61980	chr5:024894472	0.0	W/24894472-24894516,24894937-24895013,24895093-24895193,24895280-24895350,24895495-24895557,24895696-24895740,24895837-24895902,24895989-24896036,24896128-24896289,24896385-24896426,24896541-24896744,24896846-24896977,24897093-24897320,24897451-24897546,24897638-24897970,24898092-24898237,24898323-24898416,24898483-24898967,24899064-24899178	AT5G61980.1  CDS  gene_syn AGD1, ARF-GAP domain 1, K22G18.9, K22G18_9  gene AGD1  function A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD1 belongs to the class 1, together with AGD2, AGD3 and AGD4. Not expressed in hypocotyls and cotyledons.  go_function protein binding|GO:0005515||IEA  go_function ARF GTPase activator activity|GO:0008060||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component endocytic vesicle|GO:0030139|18539780|IDA  go_process cytoskeleton organization|GO:0007010|18539780|IMP  product AGD1 (ARF-GAP domain 1); ARF GTPase activator/ protein binding / zinc ion binding  note ARF-GAP domain 1 (AGD1); FUNCTIONS IN: protein binding, ARF GTPase activator activity, zinc ion binding; INVOLVED IN: cytoskeleton organization; LOCATED IN: endocytic vesicle; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164), Pleckstrin homology-type (InterPro:IPR011993), BAR (InterPro:IPR004148), Ankyrin (InterPro:IPR002110), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: SFC (SCARFACE); ARF GTPase activator/ phosphoinositide binding (TAIR:AT5G13300.1); Has 18580 Blast hits to 10915 proteins in 405 species: Archae - 41; Bacteria - 904; Metazoa - 9570; Fungi - 1063; Plants - 614; Viruses - 357; Other Eukaryotes - 6031 (source: NCBI BLink).  protein_id AT5G61980.1p  transcript_id AT5G61980.1  protein_id AT5G61980.1p  transcript_id AT5G61980.1  
At5g61990	chr5:024900186	0.0	C/24900186-24903110	AT5G61990.1  CDS  gene_syn MTG10.2, MTG10_2  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G62910.1); Has 31178 Blast hits to 6269 proteins in 190 species: Archae - 8; Bacteria - 26; Metazoa - 1171; Fungi - 905; Plants - 27382; Viruses - 0; Other Eukaryotes - 1686 (source: NCBI BLink).  protein_id AT5G61990.1p  transcript_id AT5G61990.1  protein_id AT5G61990.1p  transcript_id AT5G61990.1  
At5g61997	chr5:024908265	0.0	C/24908265-24908384	AT5G61997.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G61997.1p  transcript_id AT5G61997.1  protein_id AT5G61997.1p  transcript_id AT5G61997.1  
At5g62000	chr5:024910859	0.0	W/24910859-24911012,24911103-24911218,24911344-24911439,24911524-24911580,24911675-24911830,24911933-24912017,24912112-24912202,24912282-24912446,24912581-24912700,24912794-24912869,24912946-24913117,24913214-24914136,24914228-24914418,24914503-24914680	AT5G62000.1  CDS  gene_syn ARF1-BINDING PROTEIN, ARF1-BP, ARF2, AT5G62010, AUXIN RESPONSE FACTOR 2, HLS1 SUPPRESSOR, HSS, MTG10.1, MTG10_1  gene ARF2  function Encodes an auxin response factor. Mutants have many defects including enlarged rosette leaves, reduced fertility, later senescence, hypocotyl elongation defects, enlarged seeds and enlarged cotyledons. May not mediate auxin effects. Increase in seed size due to increased cell proliferation.  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process negative regulation of cell proliferation|GO:0008285|16339187|IMP  go_process positive regulation of flower development|GO:0009911|16176952|IMP  go_process fruit dehiscence|GO:0010047|16176952|IMP  go_process leaf senescence|GO:0010150|16176952|IMP  go_process floral organ abscission|GO:0010227|16176952|IMP  go_process negative regulation of transcription, DNA-dependent|GO:0045892|15960614|TAS  go_process ovule development|GO:0048481|16339187|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein binding|GO:0005515|9188533|IPI  product ARF2 (AUXIN RESPONSE FACTOR 2); protein binding / transcription factor  note AUXIN RESPONSE FACTOR 2 (ARF2); FUNCTIONS IN: protein binding, transcription factor activity; INVOLVED IN: in 7 processes; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: ARF1 (AUXIN RESPONSE FACTOR 1); DNA binding / transcription factor (TAIR:AT1G59750.3); Has 1438 Blast hits to 1203 proteins in 61 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 2; Plants - 1425; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G62000.1p  transcript_id AT5G62000.1  protein_id AT5G62000.1p  transcript_id AT5G62000.1  
At5g62000	chr5:024910859	0.0	W/24910859-24911012,24911103-24911218,24911344-24911439,24911524-24911580,24911675-24911830,24911933-24912017,24912112-24912202,24912282-24912446,24912581-24912700,24912794-24912869,24912946-24913117,24913214-24914136,24914228-24914418,24914503-24914680	AT5G62000.2  CDS  gene_syn ARF1-BINDING PROTEIN, ARF1-BP, ARF2, AT5G62010, AUXIN RESPONSE FACTOR 2, HLS1 SUPPRESSOR, HSS, MTG10.1, MTG10_1  gene ARF2  function Encodes an auxin response factor. Mutants have many defects including enlarged rosette leaves, reduced fertility, later senescence, hypocotyl elongation defects, enlarged seeds and enlarged cotyledons. May not mediate auxin effects. Increase in seed size due to increased cell proliferation.  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process negative regulation of cell proliferation|GO:0008285|16339187|IMP  go_process positive regulation of flower development|GO:0009911|16176952|IMP  go_process fruit dehiscence|GO:0010047|16176952|IMP  go_process leaf senescence|GO:0010150|16176952|IMP  go_process floral organ abscission|GO:0010227|16176952|IMP  go_process negative regulation of transcription, DNA-dependent|GO:0045892|15960614|TAS  go_process ovule development|GO:0048481|16339187|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein binding|GO:0005515|9188533|IPI  product ARF2 (AUXIN RESPONSE FACTOR 2); protein binding / transcription factor  note AUXIN RESPONSE FACTOR 2 (ARF2); FUNCTIONS IN: protein binding, transcription factor activity; INVOLVED IN: in 7 processes; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: ARF1 (AUXIN RESPONSE FACTOR 1); DNA binding / transcription factor (TAIR:AT1G59750.3); Has 1438 Blast hits to 1203 proteins in 61 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 2; Plants - 1425; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G62000.2p  transcript_id AT5G62000.2  protein_id AT5G62000.2p  transcript_id AT5G62000.2  
At5g62000	chr5:024910859	0.0	W/24910859-24911012,24911103-24911218,24911344-24911439,24911524-24911580,24911675-24911830,24911933-24912017,24912112-24912202,24912282-24912446,24912581-24912700,24912794-24912869,24912946-24913117,24913214-24914136,24914228-24914418,24914503-24914680	AT5G62000.3  CDS  gene_syn ARF1-BINDING PROTEIN, ARF1-BP, ARF2, AT5G62010, AUXIN RESPONSE FACTOR 2, HLS1 SUPPRESSOR, HSS, MTG10.1, MTG10_1  gene ARF2  function Encodes an auxin response factor. Mutants have many defects including enlarged rosette leaves, reduced fertility, later senescence, hypocotyl elongation defects, enlarged seeds and enlarged cotyledons. May not mediate auxin effects. Increase in seed size due to increased cell proliferation.  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process negative regulation of cell proliferation|GO:0008285|16339187|IMP  go_process positive regulation of flower development|GO:0009911|16176952|IMP  go_process fruit dehiscence|GO:0010047|16176952|IMP  go_process leaf senescence|GO:0010150|16176952|IMP  go_process floral organ abscission|GO:0010227|16176952|IMP  go_process negative regulation of transcription, DNA-dependent|GO:0045892|15960614|TAS  go_process ovule development|GO:0048481|16339187|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein binding|GO:0005515|9188533|IPI  product ARF2 (AUXIN RESPONSE FACTOR 2); protein binding / transcription factor  note AUXIN RESPONSE FACTOR 2 (ARF2); FUNCTIONS IN: protein binding, transcription factor activity; INVOLVED IN: in 7 processes; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: ARF1 (AUXIN RESPONSE FACTOR 1); DNA binding / transcription factor (TAIR:AT1G59750.3); Has 1438 Blast hits to 1203 proteins in 61 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 2; Plants - 1425; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G62000.3p  transcript_id AT5G62000.3  protein_id AT5G62000.3p  transcript_id AT5G62000.3  
At5g62020	chr5:024916212	0.0	W/24916212-24916457,24916541-24917194	AT5G62020.1  CDS  gene_syn AT-HSFB2A, HEAT SHOCK TRANSCRIPTION FACTOR B2A, HSFB2A, MTG10.7, MTG10_7  gene AT-HSFB2A  function member of Heat Stress Transcription Factor (Hsf) family  go_component nucleus|GO:0005634||IEA  go_process response to chitin|GO:0010200|17722694|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AT-HSFB2A; DNA binding / transcription factor  note AT-HSFB2A; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to chitin; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: AT-HSFB2B; transcription factor/ transcription repressor (TAIR:AT4G11660.1); Has 1335 Blast hits to 1331 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 300; Fungi - 318; Plants - 455; Viruses - 0; Other Eukaryotes - 262 (source: NCBI BLink).  protein_id AT5G62020.1p  transcript_id AT5G62020.1  protein_id AT5G62020.1p  transcript_id AT5G62020.1  
At5g62030	chr5:024919046	0.0	W/24919046-24920407	AT5G62030.1  CDS  gene_syn MTG10.5, MTG10_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product diphthamide synthesis DPH2 family protein  note diphthamide synthesis DPH2 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Diphthamide synthesis, DHP1 (InterPro:IPR016435), Diphthamide synthesis, DPH1/DHP2 (InterPro:IPR002728); BEST Arabidopsis thaliana protein match is: diphthamide synthesis DPH2 family protein (TAIR:AT3G59630.1); Has 799 Blast hits to 776 proteins in 223 species: Archae - 111; Bacteria - 0; Metazoa - 212; Fungi - 211; Plants - 36; Viruses - 0; Other Eukaryotes - 229 (source: NCBI BLink).  protein_id AT5G62030.1p  transcript_id AT5G62030.1  protein_id AT5G62030.1p  transcript_id AT5G62030.1  
At5g62040	chr5:024922810	0.0	W/24922810-24923010,24923114-24923175,24923263-24923303,24923480-24923709	AT5G62040.1  CDS  gene_syn MTG10.11, MTG10_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function phosphatidylethanolamine binding|GO:0008429||ISS  product brother of FT and TFL1 protein (BFT)  note brother of FT and TFL1 protein (BFT); FUNCTIONS IN: phosphatidylethanolamine binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Phosphatidylethanolamine-binding, conserved site (InterPro:IPR001858), Phosphatidylethanolamine-binding protein PEBP (InterPro:IPR008914); BEST Arabidopsis thaliana protein match is: TFL1 (TERMINAL FLOWER 1); phosphatidylethanolamine binding (TAIR:AT5G03840.1); Has 1363 Blast hits to 1363 proteins in 237 species: Archae - 0; Bacteria - 2; Metazoa - 566; Fungi - 111; Plants - 657; Viruses - 3; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT5G62040.1p  transcript_id AT5G62040.1  protein_id AT5G62040.1p  transcript_id AT5G62040.1  
At5g62050	chr5:024926304	0.0	C/24926304-24926758,24926019-24926109,24925513-24925560,24925303-24925361,24924958-24925033,24924735-24924866,24924541-24924648,24924409-24924463,24924062-24924327	AT5G62050.1  CDS  gene_syn MTG10.19, MTG10_19, OXA1, atoxa1, oxa1at  gene OXA1  function essential factor for protein sorting and assembly into membranes  go_component mitochondrion|GO:0005739|11148275|IDA  go_component mitochondrion|GO:0005739|14730085|IDA  go_component mitochondrial inner membrane|GO:0005743|11148275|IDA  go_process protein complex assembly|GO:0006461|9450344|IMP  go_process protein import into mitochondrial inner membrane|GO:0045039|10636840|TAS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450|9450344|IGI  product OXA1; P-P-bond-hydrolysis-driven protein transmembrane transporter  note OXA1; FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein import into mitochondrial inner membrane, protein complex assembly; LOCATED IN: mitochondrion, mitochondrial inner membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 60 kDa inner membrane insertion protein (InterPro:IPR001708); BEST Arabidopsis thaliana protein match is: OXA1L (INNER MEMBRANE PROTEIN OXA1-LIKE) (TAIR:AT2G46470.1); Has 4356 Blast hits to 4354 proteins in 1317 species: Archae - 0; Bacteria - 2589; Metazoa - 207; Fungi - 164; Plants - 111; Viruses - 0; Other Eukaryotes - 1285 (source: NCBI BLink).  protein_id AT5G62050.1p  transcript_id AT5G62050.1  protein_id AT5G62050.1p  transcript_id AT5G62050.1  
At5g62060	chr5:024927688	0.0	W/24927688-24928075,24928175-24928698	AT5G62060.1  CDS  gene_syn MTG10.8, MTG10_8  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G32420.1); Has 662 Blast hits to 644 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 662; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G62060.1p  transcript_id AT5G62060.1  protein_id AT5G62060.1p  transcript_id AT5G62060.1  
At5g62065	chr5:024929207	0.0	W/24929207-24929559,24929638-24929647	AT5G62065.1  CDS  function Encodes a Protease inhibitor/seed storage/LTP family protein. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_function lipid binding|GO:0008289||IEA  product lipid binding  note lipid binding; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528); BEST Arabidopsis thaliana protein match is: lipid transfer protein, putative (TAIR:AT5G01870.1); Has 528 Blast hits to 528 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 527; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G62065.1p  transcript_id AT5G62065.1  protein_id AT5G62065.1p  transcript_id AT5G62065.1  
At5g62070	chr5:024932059	0.0	C/24932059-24932451,24930057-24930875	AT5G62070.1  CDS  gene_syn IQ-domain 23, IQD23, MTG10.10, MTG10_10  gene IQD23  go_function calmodulin binding|GO:0005516||ISS  product IQD23 (IQ-domain 23); calmodulin binding  note IQ-domain 23 (IQD23); FUNCTIONS IN: calmodulin binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQD24 (IQ-domain 24); calmodulin binding (TAIR:AT5G07240.1); Has 462 Blast hits to 452 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 4; Plants - 406; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G62070.1p  transcript_id AT5G62070.1  protein_id AT5G62070.1p  transcript_id AT5G62070.1  
At5g62080	chr5:024934127	0.0	C/24934127-24934400,24933798-24933811	AT5G62080.1  CDS  gene_syn MTG10.3, MTG10_3  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT5G07230.1); Has 145 Blast hits to 145 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G62080.1p  transcript_id AT5G62080.1  protein_id AT5G62080.1p  transcript_id AT5G62080.1  
At5g62090	chr5:024937617	0.0	C/24937617-24938540,24937390-24937521,24937230-24937278,24936909-24937123,24936754-24936822,24936562-24936662,24936279-24936372,24936126-24936195,24935221-24936017	AT5G62090.1  CDS  gene_syn MTG10.12, MTG10_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: SLK1 (SEUSS-LIKE 1); transcription regulator (TAIR:AT4G25520.1); Has 38202 Blast hits to 15459 proteins in 742 species: Archae - 6; Bacteria - 1392; Metazoa - 14682; Fungi - 3752; Plants - 2341; Viruses - 407; Other Eukaryotes - 15622 (source: NCBI BLink).  protein_id AT5G62090.1p  transcript_id AT5G62090.1  protein_id AT5G62090.1p  transcript_id AT5G62090.1  
At5g62090	chr5:024937617	0.0	C/24937617-24938540,24937390-24937521,24937230-24937278,24936909-24937123,24936754-24936822,24936562-24936662,24936279-24936372,24936126-24936195,24935221-24936017	AT5G62090.2  CDS  gene_syn MTG10.12, MTG10_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: SLK1 (SEUSS-LIKE 1); transcription regulator (TAIR:AT4G25520.1); Has 38202 Blast hits to 15459 proteins in 742 species: Archae - 6; Bacteria - 1392; Metazoa - 14682; Fungi - 3752; Plants - 2341; Viruses - 407; Other Eukaryotes - 15622 (source: NCBI BLink).  protein_id AT5G62090.2p  transcript_id AT5G62090.2  protein_id AT5G62090.2p  transcript_id AT5G62090.2  
At5g62100	chr5:024940477	0.0	W/24940477-24940657,24940761-24941017,24941113-24941259,24941470-24941775	AT5G62100.1  CDS  gene_syn ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2, ATBAG2, MTG10.13, MTG10_13  gene ATBAG2  function A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  product ATBAG2 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2)  note ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2 (ATBAG2); INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, sepal, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: ATBAG3 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 3); protein binding (TAIR:AT5G07220.1); Has 122 Blast hits to 122 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 4; Plants - 110; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G62100.1p  transcript_id AT5G62100.1  protein_id AT5G62100.1p  transcript_id AT5G62100.1  
At5g62100	chr5:024940477	0.0	W/24940477-24940657,24940761-24941017,24941113-24941259,24941503-24941775	AT5G62100.2  CDS  gene_syn ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2, ATBAG2, MTG10.13, MTG10_13  gene ATBAG2  function A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.  go_process protein modification process|GO:0006464||IEA  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  product ATBAG2 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2); protein binding  note ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2 (ATBAG2); FUNCTIONS IN: protein binding; INVOLVED IN: protein modification process, apoptosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, sepal, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Apoptosis regulator Bcl-2 protein, BAG (InterPro:IPR003103), Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: ATBAG3 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 3); protein binding (TAIR:AT5G07220.1); Has 126 Blast hits to 126 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 4; Plants - 111; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G62100.2p  transcript_id AT5G62100.2  protein_id AT5G62100.2p  transcript_id AT5G62100.2  
At5g62100	chr5:024940477	0.0	W/24940477-24940657,24940761-24941017,24941113-24941259,24941511-24941528	AT5G62100.3  CDS  gene_syn ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2, ATBAG2, MTG10.13, MTG10_13  gene ATBAG2  function A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  product ATBAG2 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2)  note ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2 (ATBAG2); INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, sepal, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: ATBAG3 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 3); protein binding (TAIR:AT5G07220.1); Has 121 Blast hits to 121 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 4; Plants - 109; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G62100.3p  transcript_id AT5G62100.3  protein_id AT5G62100.3p  transcript_id AT5G62100.3  
At5g62110	chr5:024946034	0.0	C/24946034-24946081,24945486-24945888,24944770-24945386,24944555-24944671,24944365-24944457,24944166-24944285,24943950-24944069,24943749-24943841,24943563-24943655,24943374-24943466,24943226-24943276,24942916-24943032,24942339-24942395	AT5G62110.1  CDS  gene_syn MTG10.14, MTG10_14  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Homeodomain-related (InterPro:IPR012287); Has 11134 Blast hits to 5909 proteins in 290 species: Archae - 81; Bacteria - 576; Metazoa - 381; Fungi - 120; Plants - 31; Viruses - 44; Other Eukaryotes - 9901 (source: NCBI BLink).  protein_id AT5G62110.1p  transcript_id AT5G62110.1  protein_id AT5G62110.1p  transcript_id AT5G62110.1  
At5g62120	chr5:024948075	0.0	C/24948075-24948225,24947227-24947358,24946955-24947109	AT5G62120.1  CDS  gene_syn ARABIDOPSIS RESPONSE REGULATOR 23, ARR23, MTG10.15, MTG10_15  gene ARR23  function member of Response Regulator: B- Type  go_component cellular_component|GO:0005575||ND  go_process two-component signal transduction system (phosphorelay)|GO:0000160|12068096|TAS  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_function two-component response regulator activity|GO:0000156|12068096|ISS  go_function two-component response regulator activity|GO:0000156||ISS  go_function transcription regulator activity|GO:0030528|12068096|TAS  product ARR23 (ARABIDOPSIS RESPONSE REGULATOR 23); transcription regulator/ two-component response regulator  note ARABIDOPSIS RESPONSE REGULATOR 23 (ARR23); FUNCTIONS IN: transcription regulator activity, two-component response regulator activity; INVOLVED IN: cytokinin mediated signaling, two-component signal transduction system (phosphorelay); LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver region (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: ARR21 (ARABIDOPSIS RESPONSE REGULATOR 21); transcription factor/ two-component response regulator (TAIR:AT5G07210.1); Has 78 Blast hits to 78 proteins in 32 species: Archae - 6; Bacteria - 47; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G62120.1p  transcript_id AT5G62120.1  protein_id AT5G62120.1p  transcript_id AT5G62120.1  
At5g62130	chr5:024952821	0.0	C/24952821-24952918,24951599-24951860,24951327-24951523,24951051-24951238,24950685-24950971	AT5G62130.1  CDS  gene_syn MTG10.16, MTG10_16  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Per1-like protein-related  note Per1-like protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Per1-like (InterPro:IPR007217); BEST Arabidopsis thaliana protein match is: Per1-like family protein (TAIR:AT1G16560.3); Has 243 Blast hits to 235 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 102; Fungi - 97; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G62130.1p  transcript_id AT5G62130.1  protein_id AT5G62130.1p  transcript_id AT5G62130.1  
At5g62140	chr5:024954933	0.0	C/24954933-24955376,24954563-24954844	AT5G62140.1  CDS  gene_syn MTG10.17, MTG10_17  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 38 Blast hits to 38 proteins in 16 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G62140.1p  transcript_id AT5G62140.1  protein_id AT5G62140.1p  transcript_id AT5G62140.1  
At5g62150	chr5:024958325	0.0	W/24958325-24958633	AT5G62150.1  CDS  gene_syn MTG10.18, MTG10_18  go_component endomembrane system|GO:0012505||IEA  go_process cell wall macromolecule catabolic process|GO:0016998||IEA  go_process cell wall macromolecule catabolic process|GO:0016998||ISS  go_function molecular_function|GO:0003674||ND  product peptidoglycan-binding LysM domain-containing protein  note peptidoglycan-binding LysM domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392); BEST Arabidopsis thaliana protein match is: peptidoglycan-binding LysM domain-containing protein (TAIR:AT4G25433.1); Has 30 Blast hits to 30 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G62150.1p  transcript_id AT5G62150.1  protein_id AT5G62150.1p  transcript_id AT5G62150.1  
At5g62160	chr5:024960107	0.0	W/24960107-24960718,24960808-24961263	AT5G62160.1  CDS  gene_syn AtZIP12, MTG10.20, MTG10_20, ZINC TRANSPORTER 12 PRECURSOR  gene AtZIP12  function member of Fe(II) transporter isolog family  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|ISS  go_process cation transport|GO:0006812||ISS  go_function cation transmembrane transporter activity|GO:0008324|11500563|ISS  go_function cation transmembrane transporter activity|GO:0008324||ISS  go_function metal ion transmembrane transporter activity|GO:0046873||ISS  product AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR); cation transmembrane transporter/ metal ion transmembrane transporter  note ZINC TRANSPORTER 12 PRECURSOR (AtZIP12); FUNCTIONS IN: cation transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: cation transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal and plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: ZIP5; cation transmembrane transporter/ metal ion transmembrane transporter (TAIR:AT1G05300.1); Has 1512 Blast hits to 1442 proteins in 222 species: Archae - 0; Bacteria - 110; Metazoa - 513; Fungi - 401; Plants - 309; Viruses - 0; Other Eukaryotes - 179 (source: NCBI BLink).  protein_id AT5G62160.1p  transcript_id AT5G62160.1  protein_id AT5G62160.1p  transcript_id AT5G62160.1  
At5g62162	chr5:024962485	0.0	W/24962485-24962598	AT5G62162.1  miRNA  gene_syn MICRORNA399C, MIR399C  gene MIR399C  function Encodes a phosphate starvation-responsive microRNA that targets PHO2, an E2-UBC that negatively affects shoot phosphate content. miR399 can be negatively regulated by members of the non-coding gene families IPS1 and At4. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGCCAAAGGAGAGUUGCCCUG  go_process cellular response to phosphate starvation|GO:0016036|16387831|IEP  go_process cellular phosphate ion homeostasis|GO:0030643|16387831|IMP  go_process gene silencing by miRNA|GO:0035195|16387831|IMP  product MIR399C (MICRORNA399C); miRNA  transcript_id AT5G62162.1  
At5g62165	chr5:024965075	0.0	W/24965075-24965256,24966362-24966443,24966818-24966879,24967328-24967427,24967695-24967736,24967841-24967882,24968315-24968437	AT5G62165.1  CDS  gene_syn AGAMOUS LIKE 42, AGL42  gene AGL42  function Encodes a MADS box transcription factor. Expressed in quiescent center.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL42 (AGAMOUS LIKE 42); transcription factor  note AGAMOUS LIKE 42 (AGL42); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGL20 (AGAMOUS-LIKE 20); transcription factor (TAIR:AT2G45660.1); Has 5210 Blast hits to 5206 proteins in 688 species: Archae - 0; Bacteria - 5; Metazoa - 590; Fungi - 215; Plants - 4296; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT5G62165.1p  transcript_id AT5G62165.1  protein_id AT5G62165.1p  transcript_id AT5G62165.1  
At5g62165	chr5:024965075	0.0	W/24965075-24965256,24966362-24966443,24966818-24966879,24967328-24967427,24967695-24967736,24967841-24967882,24968315-24968437	AT5G62165.2  CDS  gene_syn AGAMOUS LIKE 42, AGL42  gene AGL42  function Encodes a MADS box transcription factor. Expressed in quiescent center.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL42 (AGAMOUS LIKE 42); transcription factor  note AGAMOUS LIKE 42 (AGL42); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGL20 (AGAMOUS-LIKE 20); transcription factor (TAIR:AT2G45660.1); Has 5210 Blast hits to 5206 proteins in 688 species: Archae - 0; Bacteria - 5; Metazoa - 590; Fungi - 215; Plants - 4296; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT5G62165.2p  transcript_id AT5G62165.2  protein_id AT5G62165.2p  transcript_id AT5G62165.2  
At5g62165	chr5:024965075	0.0	W/24965075-24965256,24966362-24966443,24966818-24966879,24967328-24967427,24967695-24967736,24967841-24967882,24968315-24968437	AT5G62165.3  CDS  gene_syn AGAMOUS LIKE 42, AGL42  gene AGL42  function Encodes a MADS box transcription factor. Expressed in quiescent center.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL42 (AGAMOUS LIKE 42); transcription factor  note AGAMOUS LIKE 42 (AGL42); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGL20 (AGAMOUS-LIKE 20); transcription factor (TAIR:AT2G45660.1); Has 5210 Blast hits to 5206 proteins in 688 species: Archae - 0; Bacteria - 5; Metazoa - 590; Fungi - 215; Plants - 4296; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT5G62165.3p  transcript_id AT5G62165.3  protein_id AT5G62165.3p  transcript_id AT5G62165.3  
At5g62170	chr5:024975265	0.0	C/24975265-24975475,24975103-24975191,24973956-24975005,24973115-24973876	AT5G62170.1  CDS  gene_syn MTG10.21, MTG10_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G51850.1); Has 309 Blast hits to 289 proteins in 62 species: Archae - 0; Bacteria - 13; Metazoa - 94; Fungi - 15; Plants - 49; Viruses - 2; Other Eukaryotes - 136 (source: NCBI BLink).  protein_id AT5G62170.1p  transcript_id AT5G62170.1  protein_id AT5G62170.1p  transcript_id AT5G62170.1  
At5g62180	chr5:024978866	0.0	C/24978866-24979849	AT5G62180.1  CDS  gene_syn Arabidopsis thaliana carboxyesterase 20, AtCXE20, MMI9.26  gene AtCXE20  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function carboxylesterase activity|GO:0004091|17270225|IDA  product AtCXE20 (Arabidopsis thaliana carboxyesterase 20); carboxylesterase  note Arabidopsis thaliana carboxyesterase 20 (AtCXE20); FUNCTIONS IN: carboxylesterase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: hydrolase (TAIR:AT2G45600.1); Has 5535 Blast hits to 5525 proteins in 880 species: Archae - 49; Bacteria - 2814; Metazoa - 387; Fungi - 621; Plants - 649; Viruses - 3; Other Eukaryotes - 1012 (source: NCBI BLink).  protein_id AT5G62180.1p  transcript_id AT5G62180.1  protein_id AT5G62180.1p  transcript_id AT5G62180.1  
At5g62190	chr5:024983448	0.0	C/24983448-24983879,24983069-24983203,24982838-24982978,24982604-24982715,24982453-24982523,24982184-24982338,24981989-24982100,24981754-24981855,24981607-24981667,24981326-24981494,24981139-24981235,24980960-24981054,24980542-24980875	AT5G62190.1  CDS  gene_syn MMI9.2, MMI9_2, PRH75, RNA HELICASE  gene PRH75  function DEAD/DEAH box RNA helicase PRH75  go_component nucleolus|GO:0005730|15496452|IDA  go_component nucleus|GO:0005634||IDA  go_component nucleolus|GO:0005730|15133128|IDA  go_process RNA metabolic process|GO:0016070||TAS  go_function ATP-dependent helicase activity|GO:0008026||ISS  go_function DEAD/H-box RNA helicase binding|GO:0017151||ISS  product PRH75; ATP-dependent helicase/ DEAD/H-box RNA helicase binding  note PRH75; FUNCTIONS IN: DEAD/H-box RNA helicase binding, ATP-dependent helicase activity; INVOLVED IN: RNA metabolic process; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), GUCT (InterPro:IPR012562), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: emb1138 (embryo defective 1138); ATP binding / ATP-dependent helicase/ RNA binding / helicase/ nucleic acid binding / zinc ion binding (TAIR:AT5G26742.2); Has 41915 Blast hits to 33924 proteins in 1879 species: Archae - 532; Bacteria - 13107; Metazoa - 10244; Fungi - 4609; Plants - 2851; Viruses - 84; Other Eukaryotes - 10488 (source: NCBI BLink).  protein_id AT5G62190.1p  transcript_id AT5G62190.1  protein_id AT5G62190.1p  transcript_id AT5G62190.1  
At5g62200	chr5:024985549	0.0	C/24985549-24985674,24985326-24985436,24984463-24984798	AT5G62200.1  CDS  gene_syn MMI9.3, MMI9_3  go_component plasma membrane|GO:0005886|17151019|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product embryo-specific protein-related  note embryo-specific protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Embryo-specific 3 (InterPro:IPR010417); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41475.1); Has 62 Blast hits to 62 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G62200.1p  transcript_id AT5G62200.1  protein_id AT5G62200.1p  transcript_id AT5G62200.1  
At5g62210	chr5:024987265	0.0	C/24987265-24987477,24986521-24986979	AT5G62210.1  CDS  gene_syn MMI9.4, MMI9_4  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product embryo-specific protein-related  note embryo-specific protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Embryo-specific 3 (InterPro:IPR010417); BEST Arabidopsis thaliana protein match is: ATS3 (ARABIDOPSIS THALIANA SEED GENE 3) (TAIR:AT5G07190.2); Has 13229 Blast hits to 5329 proteins in 428 species: Archae - 12; Bacteria - 849; Metazoa - 3915; Fungi - 1184; Plants - 3890; Viruses - 1058; Other Eukaryotes - 2321 (source: NCBI BLink).  protein_id AT5G62210.1p  transcript_id AT5G62210.1  protein_id AT5G62210.1p  transcript_id AT5G62210.1  
At5g62220	chr5:024988456	0.0	C/24988456-24990009	AT5G62220.1  CDS  gene_syn MMI9.5, MMI9_5  go_component chloroplast|GO:0009507||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_function catalytic activity|GO:0003824||ISS  product exostosin family protein  note exostosin family protein; FUNCTIONS IN: catalytic activity; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: exostosin family protein (TAIR:AT4G13990.1); Has 361 Blast hits to 361 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 340; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT5G62220.1p  transcript_id AT5G62220.1  protein_id AT5G62220.1p  transcript_id AT5G62220.1  
At5g62230	chr5:024996433	0.0	W/24996433-24996520,24997089-24997227,24997334-24997405,24997502-24997573,24997654-24997725,24997842-24997913,24998009-24998080,24998172-24998243,24998356-24998427,24998505-24998573,24998659-24998730,24998818-24998889,24998982-24999053,24999143-24999214,24999311-24999382,24999468-24999539,24999619-24999690,24999777-24999848,24999933-25000004,25000079-25000150,25000229-25000300,25000402-25000473,25000559-25000629,25000716-25000844,25000924-25001262,25001355-25001725,25001804-25002130	AT5G62230.1  CDS  gene_syn ERECTA-LIKE 1, ERL1, MMI9.14, MMI9_14  gene ERL1  function Encodes a receptor-like kinase that, together with ER and ERL2 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. It is important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. Along with erl2 functionally compensates for loss of erecta during integument development.  go_component endomembrane system|GO:0012505||IEA  go_process embryo sac development|GO:0009553|17652352|IGI  go_process stomatal complex morphogenesis|GO:0010103|16002616|IGI  go_process ovule development|GO:0048481|17652352|IGI  go_function kinase activity|GO:0016301||ISS  product ERL1 (ERECTA-LIKE 1); kinase  note ERECTA-LIKE 1 (ERL1); FUNCTIONS IN: kinase activity; INVOLVED IN: stomatal complex morphogenesis, embryo sac development, ovule development; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591); BEST Arabidopsis thaliana protein match is: ERL2 (ERECTA-LIKE 2); kinase (TAIR:AT5G07180.1); Has 153780 Blast hits to 98628 proteins in 2451 species: Archae - 83; Bacteria - 12856; Metazoa - 63457; Fungi - 7240; Plants - 49267; Viruses - 449; Other Eukaryotes - 20428 (source: NCBI BLink).  protein_id AT5G62230.1p  transcript_id AT5G62230.1  protein_id AT5G62230.1p  transcript_id AT5G62230.1  
At5g62240	chr5:025004395	0.0	C/25004395-25004569,25004185-25004319,25003940-25004096,25003765-25003864,25003584-25003666,25003440-25003509,25003289-25003354,25003162-25003209,25003040-25003086,25002858-25002966,25002704-25002783,25002541-25002604	AT5G62240.1  CDS  gene_syn MMI9.7, MMI9_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G07170.1); Has 171 Blast hits to 169 proteins in 37 species: Archae - 0; Bacteria - 10; Metazoa - 93; Fungi - 1; Plants - 40; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT5G62240.1p  transcript_id AT5G62240.1  protein_id AT5G62240.1p  transcript_id AT5G62240.1  
At5g62250	chr5:025005756	0.0	W/25005756-25005809,25005906-25006385,25006469-25006678,25006766-25006921,25007008-25007322,25007394-25007481,25007564-25007637,25007746-25007820,25007899-25008096	AT5G62250.1  CDS  gene_syn MAP65-9, MICROTUBULE-ASSOCIATED PROTEIN 65-9, MMI9.8, MMI9_8  gene MAP65-9  go_component microtubule|GO:0005874|19060108|IDA  go_process biological_process|GO:0008150||ND  product MAP65-9 (MICROTUBULE-ASSOCIATED PROTEIN 65-9)  note MICROTUBULE-ASSOCIATED PROTEIN 65-9 (MAP65-9); INVOLVED IN: biological_process unknown; LOCATED IN: microtubule; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: MAP65/ASE1 (InterPro:IPR007145); BEST Arabidopsis thaliana protein match is: PLE (PLEIADE); microtubule binding (TAIR:AT5G51600.1); Has 12370 Blast hits to 8635 proteins in 520 species: Archae - 232; Bacteria - 752; Metazoa - 6753; Fungi - 652; Plants - 477; Viruses - 43; Other Eukaryotes - 3461 (source: NCBI BLink).  protein_id AT5G62250.1p  transcript_id AT5G62250.1  protein_id AT5G62250.1p  transcript_id AT5G62250.1  
At5g62260	chr5:025009331	0.0	W/25009331-25009760,25010277-25010359,25010477-25010608,25010696-25010857,25010941-25011348	AT5G62260.1  CDS  gene_syn MMI9.9, MMI9_9  go_function DNA binding|GO:0003677||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding, conserved site (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: DNA-binding protein-related (TAIR:AT4G25320.1); Has 522 Blast hits to 513 proteins in 48 species: Archae - 0; Bacteria - 11; Metazoa - 37; Fungi - 21; Plants - 425; Viruses - 14; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT5G62260.1p  transcript_id AT5G62260.1  protein_id AT5G62260.1p  transcript_id AT5G62260.1  
At5g62270	chr5:025012227	0.0	W/25012227-25012975,25013214-25013403,25013795-25014007	AT5G62270.1  CDS  gene_syn MMI9.10, MMI9_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: mucin-related (TAIR:AT2G02880.1); Has 48 Blast hits to 48 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 4; Plants - 40; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G62270.1p  transcript_id AT5G62270.1  protein_id AT5G62270.1p  transcript_id AT5G62270.1  
At5g62280	chr5:025017165	0.0	W/25017165-25017221,25017332-25017985	AT5G62280.1  CDS  gene_syn MMI9.11, MMI9_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1442 (InterPro:IPR009902); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45360.1); Has 42 Blast hits to 42 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G62280.1p  transcript_id AT5G62280.1  protein_id AT5G62280.1p  transcript_id AT5G62280.1  
At5g62290	chr5:025019568	0.0	W/25019568-25019734,25019812-25019935,25020168-25020276,25020386-25020445,25020538-25020603,25020710-25020801,25020901-25020972	AT5G62290.1  CDS  gene_syn MMI9.12, MMI9_12  go_process chloride transport|GO:0006821||IEA  go_process cell volume homeostasis|GO:0006884||IEA  go_component cellular_component|GO:0005575||ND  go_process cell volume homeostasis|GO:0006884||ISS  go_function ion channel activity|GO:0005216||ISS  product nucleotide-sensitive chloride conductance regulator (ICln) family protein  note nucleotide-sensitive chloride conductance regulator (ICln) family protein; FUNCTIONS IN: ion channel activity; INVOLVED IN: cell volume homeostasis, chloride transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide-sensitive chloride conductance regulator (InterPro:IPR003521); Has 228 Blast hits to 228 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 148; Fungi - 27; Plants - 38; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT5G62290.1p  transcript_id AT5G62290.1  protein_id AT5G62290.1p  transcript_id AT5G62290.1  
At5g62290	chr5:025019568	0.0	W/25019568-25019734,25019812-25019935,25020168-25020276,25020386-25020445,25020541-25020603,25020710-25020801,25020901-25020972	AT5G62290.2  CDS  gene_syn MMI9.12, MMI9_12  go_process chloride transport|GO:0006821||IEA  go_process cell volume homeostasis|GO:0006884||IEA  go_component cellular_component|GO:0005575||ND  go_process cell volume homeostasis|GO:0006884||ISS  go_function ion channel activity|GO:0005216||ISS  product nucleotide-sensitive chloride conductance regulator (ICln) family protein  note nucleotide-sensitive chloride conductance regulator (ICln) family protein; FUNCTIONS IN: ion channel activity; INVOLVED IN: cell volume homeostasis, chloride transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide-sensitive chloride conductance regulator (InterPro:IPR003521); Has 214 Blast hits to 214 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 136; Fungi - 25; Plants - 38; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT5G62290.2p  transcript_id AT5G62290.2  protein_id AT5G62290.2p  transcript_id AT5G62290.2  
At5g62300	chr5:025022118	0.0	C/25022118-25022235,25021740-25021853,25021388-25021530	AT5G62300.1  CDS  go_component cell wall|GO:0005618|16287169|IDA  go_process translation|GO:0006412||IEA  go_function RNA binding|GO:0003723||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component small ribosomal subunit|GO:0015935||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S20 (RPS20C)  note 40S ribosomal protein S20 (RPS20C); FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, small ribosomal subunit, cell wall; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein S10, conserved site (InterPro:IPR018268), Ribosomal protein S10, eukaryotic/archaeal (InterPro:IPR005729), Ribosomal protein S10 (InterPro:IPR001848); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S20 (RPS20A) (TAIR:AT3G45030.1); Has 5009 Blast hits to 5009 proteins in 1497 species: Archae - 173; Bacteria - 2606; Metazoa - 280; Fungi - 91; Plants - 120; Viruses - 0; Other Eukaryotes - 1739 (source: NCBI BLink).  protein_id AT5G62300.1p  transcript_id AT5G62300.1  protein_id AT5G62300.1p  transcript_id AT5G62300.1  
At5g62300	chr5:025022118	0.0	C/25022118-25022235,25021740-25021853,25021388-25021530	AT5G62300.2  CDS  go_process translation|GO:0006412||IEA  go_function RNA binding|GO:0003723||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component small ribosomal subunit|GO:0015935||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S20 (RPS20C)  note 40S ribosomal protein S20 (RPS20C); FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, small ribosomal subunit; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein S10, conserved site (InterPro:IPR018268), Ribosomal protein S10, eukaryotic/archaeal (InterPro:IPR005729), Ribosomal protein S10 (InterPro:IPR001848); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S20 (RPS20A) (TAIR:AT3G45030.1); Has 5009 Blast hits to 5009 proteins in 1497 species: Archae - 173; Bacteria - 2606; Metazoa - 280; Fungi - 91; Plants - 120; Viruses - 0; Other Eukaryotes - 1739 (source: NCBI BLink).  protein_id AT5G62300.2p  transcript_id AT5G62300.2  protein_id AT5G62300.2p  transcript_id AT5G62300.2  
At5g62310	chr5:025023405	0.0	W/25023405-25023828,25023941-25024008,25024097-25024273,25024354-25025610,25025723-25025895,25025996-25026245,25026332-25026424,25026514-25026654,25026755-25026847,25026922-25027126,25027203-25027288,25027377-25027465,25027620-25027671,25027746-25027802,25027889-25028044,25028146-25028229,25028313-25028414	AT5G62310.1  CDS  gene_syn INCOMPLETE ROOT HAIR ELONGATION, IRE, MMI9.15, MMI9_15  gene IRE  function Encodes a protein with a serine/threonine kinase domain. There are two other closely related members in Arabidopsis. Knock-out mutation results in incomplete root hair elongation. Expression is found all organs examined but is especially strong in elongating root hairs.  go_component cellular_component|GO:0005575||ND  go_process unidimensional cell growth|GO:0009826|12000677|IMP  go_function protein serine/threonine kinase activity|GO:0004674|12000677|TAS  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product IRE (INCOMPLETE ROOT HAIR ELONGATION); kinase/ protein serine/threonine kinase  note INCOMPLETE ROOT HAIR ELONGATION (IRE); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity; INVOLVED IN: unidimensional cell growth; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT3G17850.1); Has 92427 Blast hits to 91174 proteins in 3346 species: Archae - 80; Bacteria - 8361; Metazoa - 40451; Fungi - 8564; Plants - 16864; Viruses - 465; Other Eukaryotes - 17642 (source: NCBI BLink).  protein_id AT5G62310.1p  transcript_id AT5G62310.1  protein_id AT5G62310.1p  transcript_id AT5G62310.1  
At5g62320	chr5:025029500	0.0	C/25029500-25029786,25028885-25029335	AT5G62320.1  CDS  gene_syn ATMYB99, ATMYBCU15, MMI9.18, MMI9_18, MYB DOMAIN PROTEIN 99, MYB99, myb domain protein 99  gene ATMYB99  function Encodes a putative transcription factor (MYB99).  go_process regulation of transcription, DNA-dependent|GO:0006355|11597504|ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ATMYB99 (MYB DOMAIN PROTEIN 99); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 99 (ATMYB99); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: leaf whorl, tapetum, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB85 (myb domain protein 85); DNA binding / transcription activator/ transcription factor (TAIR:AT4G22680.1); Has 5622 Blast hits to 5322 proteins in 310 species: Archae - 0; Bacteria - 0; Metazoa - 444; Fungi - 153; Plants - 3709; Viruses - 3; Other Eukaryotes - 1313 (source: NCBI BLink).  protein_id AT5G62320.1p  transcript_id AT5G62320.1  protein_id AT5G62320.1p  transcript_id AT5G62320.1  
At5g62330	chr5:025031601	0.0	W/25031601-25031971,25032063-25032204	AT5G62330.1  CDS  gene_syn MMI9.16, MMI9_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT5G62340.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G62330.1p  transcript_id AT5G62330.1  protein_id AT5G62330.1p  transcript_id AT5G62330.1  
At5g62340	chr5:025033602	0.0	W/25033602-25034222	AT5G62340.1  CDS  gene_syn MMI9.17, MMI9_17  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22) (TAIR:AT5G62350.1); Has 142 Blast hits to 142 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 142; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G62340.1p  transcript_id AT5G62340.1  protein_id AT5G62340.1p  transcript_id AT5G62340.1  
At5g62350	chr5:025037504	0.0	W/25037504-25038112	AT5G62350.1  CDS  gene_syn MMI9.21, MMI9_21  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process response to salt stress|GO:0009651|11351099|IEP  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22)  note invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT3G47380.1); Has 407 Blast hits to 402 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 407; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G62350.1p  transcript_id AT5G62350.1  protein_id AT5G62350.1p  transcript_id AT5G62350.1  
At5g62360	chr5:025040699	0.0	W/25040699-25041310	AT5G62360.1  CDS  gene_syn MMI9.1, MMI9_1  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22) (TAIR:AT5G62350.1); Has 459 Blast hits to 454 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 7; Plants - 446; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G62360.1p  transcript_id AT5G62360.1  protein_id AT5G62360.1p  transcript_id AT5G62360.1  
At5g62370	chr5:025041901	0.0	C/25041901-25044849	AT5G62370.1  CDS  gene_syn MMI9.20, MMI9_20  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G62910.1); Has 26228 Blast hits to 5623 proteins in 175 species: Archae - 4; Bacteria - 12; Metazoa - 516; Fungi - 458; Plants - 24306; Viruses - 0; Other Eukaryotes - 932 (source: NCBI BLink).  protein_id AT5G62370.1p  transcript_id AT5G62370.1  protein_id AT5G62370.1p  transcript_id AT5G62370.1  
At5g62380	chr5:025050684	0.0	W/25050684-25050843,25050972-25051858	AT5G62380.1  CDS  gene_syn ANAC101, ARABIDOPSIS NAC-DOMAIN PROTEIN 101, MMI9.6, MMI9_6, VASCULAR-RELATED NAC-DOMAIN 6, VND6  gene ANAC101  function Encodes a NAC-domain transcription factor involved in xylem formation. Induces transdifferentiation of various cells into metaxylem vessel elements. Located in the nucleus. Expression induced in the presence of auxin, cytokinin and brassinosteroids.  go_component nucleus|GO:0005634|16103214|IDA  go_process multicellular organismal development|GO:0007275||ISS  go_process response to cytokinin stimulus|GO:0009735|16103214|IEP  go_process response to abscisic acid stimulus|GO:0009737|16103214|IEP  go_process response to brassinosteroid stimulus|GO:0009741|16103214|IEP  go_process xylem histogenesis|GO:0010089|16103214|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|18952777|IDA  go_function transcription regulator activity|GO:0030528|16103214|TAS  product ANAC101 (ARABIDOPSIS NAC-DOMAIN PROTEIN 101); transcription activator/ transcription factor/ transcription regulator  note ARABIDOPSIS NAC-DOMAIN PROTEIN 101 (ANAC101); FUNCTIONS IN: transcription factor activity, transcription regulator activity, transcription activator activity; INVOLVED IN: multicellular organismal development, xylem histogenesis, response to brassinosteroid stimulus, response to abscisic acid stimulus, response to cytokinin stimulus; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC007 (ARABIDOPSIS NAC 007); transcription factor (TAIR:AT1G12260.1); Has 1632 Blast hits to 1630 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1632; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G62380.1p  transcript_id AT5G62380.1  protein_id AT5G62380.1p  transcript_id AT5G62380.1  
At5g62390	chr5:025053325	0.0	C/25053325-25054170,25052762-25053052,25052377-25052580	AT5G62390.1  CDS  gene_syn ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 7, ATBAG7, MMI9.22, MMI9_22  gene ATBAG7  function A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_function calmodulin binding|GO:0005516||ISS  product ATBAG7 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 7); calmodulin binding  note ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 7 (ATBAG7); FUNCTIONS IN: calmodulin binding; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); Has 7049 Blast hits to 4476 proteins in 385 species: Archae - 15; Bacteria - 596; Metazoa - 2518; Fungi - 677; Plants - 307; Viruses - 26; Other Eukaryotes - 2910 (source: NCBI BLink).  protein_id AT5G62390.1p  transcript_id AT5G62390.1  protein_id AT5G62390.1p  transcript_id AT5G62390.1  
At5g62400	chr5:025055130	0.0	C/25055130-25055606,25054614-25054781	AT5G62400.1  CDS  gene_syn MMI9.23, MMI9_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G62400.1p  transcript_id AT5G62400.1  protein_id AT5G62400.1p  transcript_id AT5G62400.1  
At5g62410	chr5:025056308	0.0	W/25056308-25056625,25056725-25057405,25057498-25057641,25057730-25058020,25058096-25058281,25058363-25058527,25058612-25058671,25058793-25058855,25059179-25059270,25059361-25059457,25059662-25059778,25059894-25060112,25060266-25060406,25060486-25060653,25061041-25061225,25061355-25061448,25061537-25061625,25061748-25061973,25062138-25062212,25062320-25062436	AT5G62410.1  CDS  gene_syn ATCAP-E1, ATSMC4, MMI9.19, MMI9_19, SMC2, STRUCTURAL MAINTENANCE OF CHROMOSOMES 2, TITAN 3, TTN3  gene SMC2  function SMC2-1 (SMC2)  go_process chromosome organization|GO:0051276||IEA  go_component condensin complex|GO:0000796|11846874|ISS  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  product SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2); transporter  note STRUCTURAL MAINTENANCE OF CHROMOSOMES 2 (SMC2); FUNCTIONS IN: transporter activity; INVOLVED IN: chromosome organization; LOCATED IN: condensin complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: ATSMC2; transporter (TAIR:AT3G47460.1); Has 98767 Blast hits to 49409 proteins in 2062 species: Archae - 1135; Bacteria - 12747; Metazoa - 46030; Fungi - 6957; Plants - 3591; Viruses - 401; Other Eukaryotes - 27906 (source: NCBI BLink).  protein_id AT5G62410.1p  transcript_id AT5G62410.1  protein_id AT5G62410.1p  transcript_id AT5G62410.1  
At5g62420	chr5:025064835	0.0	W/25064835-25064954,25065050-25065225,25065305-25065551,25065631-25065810,25065884-25066111	AT5G62420.1  CDS  gene_syn K19B1.2, K19B1_2  go_process oxidation reduction|GO:0055114||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product aldo/keto reductase family protein  note aldo/keto reductase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: oxidation reduction; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Aldo/keto reductase, conserved site (InterPro:IPR018170); BEST Arabidopsis thaliana protein match is: aldo/keto reductase family protein (TAIR:AT2G37770.2); Has 12413 Blast hits to 12391 proteins in 1326 species: Archae - 167; Bacteria - 7154; Metazoa - 1556; Fungi - 1104; Plants - 883; Viruses - 0; Other Eukaryotes - 1549 (source: NCBI BLink).  protein_id AT5G62420.1p  transcript_id AT5G62420.1  protein_id AT5G62420.1p  transcript_id AT5G62420.1  
At5g62430	chr5:025070695	0.0	C/25070695-25070787,25069298-25070101	AT5G62430.1  CDS  gene_syn CDF1, CYCLING DOF FACTOR 1, K19B1.4, K19B1_4  gene CDF1  function Dof-type zinc finger domain-containing protein, similar to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Represses expression of Constans (CO), a circadian regulator of flowering time. Interacts with LKP2 and FKF1. Expression oscillates under constant light conditions. Mainly expressed in the vasculature of cotyledons, leaves and hypocotyls, but also in stomata. Localized to the nucleus and acts as a repressor of CONSTANS through binding to the Dof binding sites in the CO promoter. Protein gets degraded by FKF1 in the afternoon.  go_component nucleus|GO:0005634|16002617|IDA  go_process negative regulation of transcription|GO:0016481|16002617|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|16002617|IMP  go_function DNA binding|GO:0003677|16002617|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  go_function protein binding|GO:0005515|16002617|IPI  product CDF1 (CYCLING DOF FACTOR 1); DNA binding / protein binding / transcription factor  note CYCLING DOF FACTOR 1 (CDF1); FUNCTIONS IN: protein binding, transcription factor activity, DNA binding; INVOLVED IN: negative regulation of transcription, regulation of timing of transition from vegetative to reproductive phase, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: CDF3 (CYCLING DOF FACTOR 3); DNA binding / protein binding / transcription factor (TAIR:AT3G47500.1); Has 634 Blast hits to 615 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 629; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G62430.1p  transcript_id AT5G62430.1  protein_id AT5G62430.1p  transcript_id AT5G62430.1  
At5g62440	chr5:025073621	0.0	C/25073621-25073917,25072620-25072931	AT5G62440.1  CDS  gene_syn AT5G62450, K19B1.5, K19B1_5  function Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.  go_component nucleus|GO:0005634|15341625|IDA  go_process embryonic development|GO:0009790|15341625|IMP  go_process nucleologenesis|GO:0017126|15341625|IMP  go_process regulation of cell division|GO:0051302|15341625|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development, regulation of cell division, nucleologenesis; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; Has 1039 Blast hits to 709 proteins in 130 species: Archae - 2; Bacteria - 145; Metazoa - 328; Fungi - 186; Plants - 209; Viruses - 3; Other Eukaryotes - 166 (source: NCBI BLink).  protein_id AT5G62440.1p  transcript_id AT5G62440.1  protein_id AT5G62440.1p  transcript_id AT5G62440.1  
At5g62460	chr5:025075545	0.0	W/25075545-25075847,25075945-25076016,25076111-25076175,25076341-25076494,25076562-25076651,25076749-25076838,25076923-25077072	AT5G62460.1  CDS  gene_syn K19B1.7, K19B1_7  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G47550.6); Has 1410 Blast hits to 1409 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 705; Fungi - 83; Plants - 350; Viruses - 35; Other Eukaryotes - 237 (source: NCBI BLink).  protein_id AT5G62460.1p  transcript_id AT5G62460.1  protein_id AT5G62460.1p  transcript_id AT5G62460.1  
At5g62470	chr5:025080722	0.0	C/25080722-25080858,25080317-25080439,25079434-25080229	AT5G62470.1  CDS  gene_syn ATMYB96, K19B1.8, K19B1_8, MYB DOMAIN PROTEIN 96, MYB96, MYBCOV1, myb domain protein 96  gene MYB96  function Encodes a R2R3 type Myb transcription factor whose expression is strongly induced by abscisic acid.  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB96 (myb domain protein 96); DNA binding / transcription factor  note myb domain protein 96 (MYB96); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 9 processes; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: ATMYB94 (MYB DOMAIN PROTEIN 94); DNA binding / transcription factor (TAIR:AT3G47600.1); Has 7605 Blast hits to 6049 proteins in 378 species: Archae - 0; Bacteria - 18; Metazoa - 1092; Fungi - 388; Plants - 3787; Viruses - 6; Other Eukaryotes - 2314 (source: NCBI BLink).  protein_id AT5G62470.1p  transcript_id AT5G62470.1  protein_id AT5G62470.1p  transcript_id AT5G62470.1  
At5g62470	chr5:025080726	0.0	C/25080726-25080858,25080317-25080446,25079434-25080229	AT5G62470.2  CDS  gene_syn ATMYB96, K19B1.8, K19B1_8, MYB DOMAIN PROTEIN 96, MYB96, MYBCOV1, myb domain protein 96  gene MYB96  function Encodes a R2R3 type Myb transcription factor whose expression is strongly induced by abscisic acid.  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB96 (myb domain protein 96); DNA binding / transcription factor  note myb domain protein 96 (MYB96); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 9 processes; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: ATMYB94 (MYB DOMAIN PROTEIN 94); DNA binding / transcription factor (TAIR:AT3G47600.1); Has 7387 Blast hits to 5974 proteins in 381 species: Archae - 0; Bacteria - 18; Metazoa - 956; Fungi - 368; Plants - 3775; Viruses - 4; Other Eukaryotes - 2266 (source: NCBI BLink).  protein_id AT5G62470.2p  transcript_id AT5G62470.2  protein_id AT5G62470.2p  transcript_id AT5G62470.2  
At5g62480	chr5:025089240	0.0	C/25089240-25089566,25088775-25089170	AT5G62480.1  CDS  gene_syn ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9, ATGSTU9, GLUTATHIONE S-TRANSFERASE 14, GLUTATHIONE S-TRANSFERASE 14B, GST14, GST14B, K19B1.9, K19B1_9  gene ATGSTU9  function Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9); glutathione transferase  note ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9 (ATGSTU9); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: stem, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: GSTU10 (GLUTATHIONE S-TRANSFERASE TAU 10); glutathione transferase (TAIR:AT1G74590.1); Has 4656 Blast hits to 4653 proteins in 761 species: Archae - 0; Bacteria - 2295; Metazoa - 684; Fungi - 78; Plants - 1047; Viruses - 0; Other Eukaryotes - 552 (source: NCBI BLink).  protein_id AT5G62480.1p  transcript_id AT5G62480.1  protein_id AT5G62480.1p  transcript_id AT5G62480.1  
At5g62480	chr5:025089374	0.0	C/25089374-25089566,25089240-25089295,25088775-25089170	AT5G62480.2  CDS  gene_syn ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9, ATGSTU9, GLUTATHIONE S-TRANSFERASE 14, GLUTATHIONE S-TRANSFERASE 14B, GST14, GST14B, K19B1.9, K19B1_9  gene ATGSTU9  function Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9); glutathione transferase  note ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9 (ATGSTU9); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: stem, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: GSTU10 (GLUTATHIONE S-TRANSFERASE TAU 10); glutathione transferase (TAIR:AT1G74590.1); Has 997 Blast hits to 994 proteins in 108 species: Archae - 0; Bacteria - 38; Metazoa - 11; Fungi - 32; Plants - 902; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT5G62480.2p  transcript_id AT5G62480.2  protein_id AT5G62480.2p  transcript_id AT5G62480.2  
At5g62490	chr5:025090206	0.0	W/25090206-25090267,25090354-25090380,25090475-25090597,25090955-25091186,25091286-25091345	AT5G62490.1  CDS  gene_syn ATHVA22B, K19B1.10, K19B1_10  gene ATHVA22B  function Part of the AtHVA22 family. Protein expression is ABA- and stress-inducible.  go_component endomembrane system|GO:0012505||IEA  go_process response to abscisic acid stimulus|GO:0009737|12081371|IEP  go_process hyperosmotic salinity response|GO:0042538|12081371|IEP  go_function molecular_function|GO:0003674||ND  product ATHVA22B  note ATHVA22B; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: hyperosmotic salinity response, response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: stem, rosette leaf, cauline leaf, flower; CONTAINS InterPro DOMAIN/s: TB2/DP1 and HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: ATHVA22A (TAIR:AT1G74520.1); Has 1013 Blast hits to 1012 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 529; Fungi - 139; Plants - 286; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT5G62490.1p  transcript_id AT5G62490.1  protein_id AT5G62490.1p  transcript_id AT5G62490.1  
At5g62500	chr5:025092929	0.0	W/25092929-25093036,25093683-25093751,25093830-25093916,25094018-25094124,25094215-25094348,25094431-25094507,25094610-25094723,25094821-25095006	AT5G62500.1  CDS  gene_syn ATEB1B, END BINDING PROTEIN 1B, K19B1.11, K19B1_11  gene ATEB1B  function encodes a homolog of animal microtubule-end-binding protein. There are two other members of this family. EB1 forms foci at regions where the minus ends of microtubules are gathered during mitosis and early cytokinesis.  go_function microtubule binding|GO:0008017||IEA  go_component nucleus|GO:0005634|15469496|IDA  go_component microtubule organizing center|GO:0005815|14557818|IDA  go_component spindle|GO:0005819|15469496|IDA  go_component microtubule|GO:0005874|15469496|IDA  go_component phragmoplast|GO:0009524|15469496|IDA  go_component cortical microtubule, transverse to long axis|GO:0010005|14557818|IDA  go_process cytoskeleton organization|GO:0007010|14557818|TAS  go_process thigmotropism|GO:0009652|18281505|IMP  go_process positive gravitropism|GO:0009958|18281505|IMP  go_function microtubule binding|GO:0008017||ISS  product ATEB1B (END BINDING PROTEIN 1B); microtubule binding  note END BINDING PROTEIN 1B (ATEB1B); FUNCTIONS IN: microtubule binding; INVOLVED IN: thigmotropism, positive gravitropism, cytoskeleton organization; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), EB1, C-terminal (InterPro:IPR004953); BEST Arabidopsis thaliana protein match is: ATEB1A; microtubule binding (TAIR:AT3G47690.1); Has 823 Blast hits to 788 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 542; Fungi - 93; Plants - 58; Viruses - 2; Other Eukaryotes - 128 (source: NCBI BLink).  protein_id AT5G62500.1p  transcript_id AT5G62500.1  protein_id AT5G62500.1p  transcript_id AT5G62500.1  
At5g62510	chr5:025095373	0.0	C/25095373-25096635	AT5G62510.1  CDS  gene_syn K19B1.12, K19B1_12  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G62660.1); Has 1030 Blast hits to 1000 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1028; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G62510.1p  transcript_id AT5G62510.1  protein_id AT5G62510.1p  transcript_id AT5G62510.1  
At5g62520	chr5:025098071	0.0	W/25098071-25098528,25098617-25098861,25098945-25099063,25099157-25099264	AT5G62520.1  CDS  gene_syn K19B1.13, K19B1_13, SIMILAR TO RCD ONE 5, SRO5  gene SRO5  function Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. Up-regulated by NaCl. SRO5 and P5CDH (an overlapping gene in the antisense orientation) generate 24-nt and 21-nt siRNAs, which together are components of a regulatory loop controlling reactive oxygen species (ROS) production and stress response.  go_function NAD+ ADP-ribosyltransferase activity|GO:0003950||IEA  go_component mitochondrion|GO:0005739|16377568|IDA  go_process oxygen and reactive oxygen species metabolic process|GO:0006800|16377568|IMP  go_process response to salt stress|GO:0009651|16377568|IEP  product SRO5 (SIMILAR TO RCD ONE 5); NAD+ ADP-ribosyltransferase  note SIMILAR TO RCD ONE 5 (SRO5); FUNCTIONS IN: NAD+ ADP-ribosyltransferase activity; INVOLVED IN: oxygen and reactive oxygen species metabolic process, response to salt stress; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Poly(ADP-ribose) polymerase, catalytic region (InterPro:IPR012317); BEST Arabidopsis thaliana protein match is: SRO4 (SIMILAR TO RCD ONE 4); NAD+ ADP-ribosyltransferase (TAIR:AT3G47720.1); Has 92 Blast hits to 89 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G62520.1p  transcript_id AT5G62520.1  protein_id AT5G62520.1p  transcript_id AT5G62520.1  
At5g62520	chr5:025098071	0.0	W/25098071-25098528,25098617-25098884	AT5G62520.2  CDS  gene_syn K19B1.13, K19B1_13, SIMILAR TO RCD ONE 5, SRO5  gene SRO5  function Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. Up-regulated by NaCl. SRO5 and P5CDH (an overlapping gene in the antisense orientation) generate 24-nt and 21-nt siRNAs, which together are components of a regulatory loop controlling reactive oxygen species (ROS) production and stress response.  go_function NAD+ ADP-ribosyltransferase activity|GO:0003950||IEA  go_component mitochondrion|GO:0005739|16377568|IDA  go_process oxygen and reactive oxygen species metabolic process|GO:0006800|16377568|IMP  go_process response to salt stress|GO:0009651|16377568|IEP  product SRO5 (SIMILAR TO RCD ONE 5); NAD+ ADP-ribosyltransferase  note SIMILAR TO RCD ONE 5 (SRO5); FUNCTIONS IN: NAD+ ADP-ribosyltransferase activity; INVOLVED IN: oxygen and reactive oxygen species metabolic process, response to salt stress; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Poly(ADP-ribose) polymerase, catalytic region (InterPro:IPR012317); BEST Arabidopsis thaliana protein match is: SRO4 (SIMILAR TO RCD ONE 4); NAD+ ADP-ribosyltransferase (TAIR:AT3G47720.1); Has 89 Blast hits to 89 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G62520.2p  transcript_id AT5G62520.2  protein_id AT5G62520.2p  transcript_id AT5G62520.2  
At5g62530	chr5:025103071	0.0	C/25103071-25103159,25102639-25102718,25102421-25102524,25102262-25102329,25102107-25102164,25101886-25101999,25101622-25101705,25101436-25101540,25101240-25101353,25101018-25101149,25100843-25100932,25100649-25100738,25100352-25100564,25100146-25100256,25099989-25100068,25099768-25099906	AT5G62530.1  CDS  gene_syn ALDH12A1, ATP5CDH, DELTA1-PYROLINE-5-CARBOXYLATE DEHYDROGENASE, K19B1.14, K19B1_14, P5CDH  gene ALDH12A1  function Encodes mitochondrial Delta-pyrroline-5- carboxylate dehydrogenase. Involved in the catabolism of proline to glutamate. Involved in protection from proline toxicity. Induced at pathogen infection sites. P5CDH and SRO5 (an overlapping gene in the sense orientation) generate 24-nt and 21-nt siRNAs, which together are components of a regulatory loop controlling reactive oxygen species (ROS) production and stress response.  go_component chloroplast|GO:0009507|15028209|IDA  go_component mitochondrion|GO:0005739|11532180|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process proline metabolic process|GO:0006560|11532180|TAS  go_process oxygen and reactive oxygen species metabolic process|GO:0006800|16377568|IMP  go_process response to salt stress|GO:0009651|16377568|IEP  go_process proline catabolic process to glutamate|GO:0010133|15548746|IMP  go_function 1-pyrroline-5-carboxylate dehydrogenase activity|GO:0003842|11532180|IGI  go_function 1-pyrroline-5-carboxylate dehydrogenase activity|GO:0003842|11532180|IMP  go_function 3-chloroallyl aldehyde dehydrogenase activity|GO:0004028||ISS  product ALDH12A1; 1-pyrroline-5-carboxylate dehydrogenase/ 3-chloroallyl aldehyde dehydrogenase  note ALDH12A1; FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, 1-pyrroline-5-carboxylate dehydrogenase activity; INVOLVED IN: oxygen and reactive oxygen species metabolic process, response to salt stress, proline catabolic process to glutamate, proline metabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: ALDH7B4 (Aldehyde Dehydrogenase 7B4); 3-chloroallyl aldehyde dehydrogenase/ oxidoreductase (TAIR:AT1G54100.2); Has 24986 Blast hits to 24986 proteins in 1581 species: Archae - 217; Bacteria - 14867; Metazoa - 1516; Fungi - 944; Plants - 447; Viruses - 0; Other Eukaryotes - 6995 (source: NCBI BLink).  protein_id AT5G62530.1p  transcript_id AT5G62530.1  protein_id AT5G62530.1p  transcript_id AT5G62530.1  
At5g62540	chr5:025104679	0.0	W/25104679-25104803,25104878-25104903,25105002-25105091,25105171-25105259,25105343-25105465	AT5G62540.1  CDS  gene_syn K19B1.15, K19B1_15, UBC3, ubiquitin-conjugating enzyme 3  gene UBC3  function Encodes a protein predicted to be an E2 ubiquitin conjugating enzyme. It appears homologous to the RAD6 protein in yeast implicated in histone ubiquitination, but, UBC3 has not been experimentally associated with this process.  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC3 (ubiquitin-conjugating enzyme 3); ubiquitin-protein ligase  note ubiquitin-conjugating enzyme 3 (UBC3); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2); ubiquitin-protein ligase (TAIR:AT2G02760.1); Has 7736 Blast hits to 7707 proteins in 310 species: Archae - 0; Bacteria - 0; Metazoa - 3674; Fungi - 1502; Plants - 1179; Viruses - 22; Other Eukaryotes - 1359 (source: NCBI BLink).  protein_id AT5G62540.1p  transcript_id AT5G62540.1  protein_id AT5G62540.1p  transcript_id AT5G62540.1  
At5g62550	chr5:025107833	0.0	C/25107833-25107875,25107640-25107745,25107024-25107405,25106084-25106927,25105950-25106002,25105839-25105874	AT5G62550.1  CDS  gene_syn K19B1.16, K19B1_16  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28770.1); Has 12590 Blast hits to 8122 proteins in 661 species: Archae - 32; Bacteria - 1823; Metazoa - 4128; Fungi - 1277; Plants - 397; Viruses - 48; Other Eukaryotes - 4885 (source: NCBI BLink).  protein_id AT5G62550.1p  transcript_id AT5G62550.1  protein_id AT5G62550.1p  transcript_id AT5G62550.1  
At5g62560	chr5:025110073	0.0	W/25110073-25111752	AT5G62560.1  CDS  gene_syn K19B1.17, K19B1_17  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  product armadillo/beta-catenin repeat family protein / U-box domain-containing protein  note armadillo/beta-catenin repeat family protein / U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein / U-box domain-containing protein (TAIR:AT3G47820.1); Has 2475 Blast hits to 1682 proteins in 159 species: Archae - 0; Bacteria - 12; Metazoa - 520; Fungi - 340; Plants - 1368; Viruses - 0; Other Eukaryotes - 235 (source: NCBI BLink).  protein_id AT5G62560.1p  transcript_id AT5G62560.1  protein_id AT5G62560.1p  transcript_id AT5G62560.1  
At5g62570	chr5:025114988	0.0	W/25114988-25115050,25115141-25115193,25115278-25115762,25115893-25116053,25116218-25116457,25116506-25116967	AT5G62570.1  CDS  gene_syn K19B1.18, K19B1_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516|11782485|IEP  go_function calmodulin binding|GO:0005516|11782485|TAS  product calmodulin-binding protein  note calmodulin-binding protein; FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Calmodulin binding protein-like (InterPro:IPR012416); BEST Arabidopsis thaliana protein match is: calmodulin-binding protein (TAIR:AT4G25800.2); Has 164 Blast hits to 160 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G62570.1p  transcript_id AT5G62570.1  protein_id AT5G62570.1p  transcript_id AT5G62570.1  
At5g62575	chr5:025117542	0.0	W/25117542-25117601,25117687-25117755,25118054-25118156,25118495-25118565	AT5G62575.2  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G47833.1); Has 26 Blast hits to 26 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G62575.2p  transcript_id AT5G62575.2  protein_id AT5G62575.2p  transcript_id AT5G62575.2  
At5g62575	chr5:025117542	0.0	W/25117542-25117601,25117690-25117755,25118054-25118156,25118495-25118565	AT5G62575.1  CDS  go_component mitochondrion|GO:0005739|15276431|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G47833.1); Has 26 Blast hits to 26 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G62575.1p  transcript_id AT5G62575.1  protein_id AT5G62575.1p  transcript_id AT5G62575.1  
At5g62576	chr5:025118900	0.0	W/25118900-25119103	AT5G62576.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G62576.1p  transcript_id AT5G62576.1  protein_id AT5G62576.1p  transcript_id AT5G62576.1  
At5g62580	chr5:025120010	0.0	W/25120010-25120819,25120911-25121016,25121120-25121634,25121736-25122077,25122185-25122259	AT5G62580.1  CDS  gene_syn K19B1.19, K19B1_19  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT1G27210.1); Has 78 Blast hits to 77 proteins in 18 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G62580.1p  transcript_id AT5G62580.1  protein_id AT5G62580.1p  transcript_id AT5G62580.1  
At5g62600	chr5:025132351	0.0	C/25132351-25132473,25131703-25131780,25131549-25131611,25131275-25131322,25131041-25131187,25130430-25130561,25129999-25130039,25129625-25129716,25129017-25129144,25128602-25128677,25128340-25128460,25128167-25128266,25127803-25127884,25127289-25127371,25126965-25127081,25126693-25126744,25126387-25126542,25125301-25125424,25125146-25125227,25124984-25125063,25124829-25124903,25124686-25124740,25124395-25124514,25124226-25124318,25123991-25124136,25123714-25123891,25123337-25123621	AT5G62600.1  CDS  gene_syn K19B1.1, K19B1_1  go_component nucleus|GO:0005634||IEA  go_component nuclear pore|GO:0005643||IEA  go_component cytoplasm|GO:0005737||IEA  go_process protein import into nucleus, docking|GO:0000059||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function binding|GO:0005488||IEA  go_function protein transporter activity|GO:0008565||IEA  product transportin-SR-related  note transportin-SR-related; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Exportin-1/Importin-beta-like (InterPro:IPR013598), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: importin-related (TAIR:AT1G12930.1); Has 423 Blast hits to 410 proteins in 117 species: Archae - 0; Bacteria - 2; Metazoa - 234; Fungi - 117; Plants - 40; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT5G62600.1p  transcript_id AT5G62600.1  protein_id AT5G62600.1p  transcript_id AT5G62600.1  
At5g62610	chr5:025134301	0.0	C/25134301-25134600,25133779-25133985,25133631-25133696,25133481-25133549,25133332-25133409,25133117-25133242	AT5G62610.1  CDS  gene_syn MRG21.2, MRG21_2  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: ZCW32; DNA binding / transcription factor (TAIR:AT1G59640.1); Has 1299 Blast hits to 1299 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 31; Plants - 1252; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G62610.1p  transcript_id AT5G62610.1  protein_id AT5G62610.1p  transcript_id AT5G62610.1  
At5g62620	chr5:025137136	0.0	W/25137136-25138021,25138115-25138359,25138462-25138752,25138860-25138988,25139082-25139239,25139352-25139433	AT5G62620.2  CDS  gene_syn MRG21.3, MRG21_3  go_process protein amino acid glycosylation|GO:0006486||IEA  go_function sugar binding|GO:0005529||IEA  go_function galactosyltransferase activity|GO:0008378||IEA  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product galactosyltransferase family protein  note galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, sugar binding, galactosyltransferase activity; INVOLVED IN: protein amino acid glycosylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galectin, carbohydrate recognition domain (InterPro:IPR001079), Glycosyl transferase, family 31 (InterPro:IPR002659), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: galactosyltransferase family protein (TAIR:AT1G74800.1); Has 1011 Blast hits to 1006 proteins in 80 species: Archae - 0; Bacteria - 4; Metazoa - 850; Fungi - 2; Plants - 140; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT5G62620.2p  transcript_id AT5G62620.2  protein_id AT5G62620.2p  transcript_id AT5G62620.2  
At5g62620	chr5:025137136	0.0	W/25137136-25138021,25138115-25138359,25138462-25138752,25138860-25138988,25139082-25139255,25139352-25139459,25139552-25139764	AT5G62620.1  CDS  gene_syn MRG21.3, MRG21_3  go_component chloroplast|GO:0009507|15028209|IDA  go_process protein amino acid glycosylation|GO:0006486||IEA  go_function sugar binding|GO:0005529||IEA  go_function galactosyltransferase activity|GO:0008378||IEA  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product galactosyltransferase family protein  note galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, sugar binding, galactosyltransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galectin, carbohydrate recognition domain (InterPro:IPR001079), Glycosyl transferase, family 31 (InterPro:IPR002659), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320); BEST Arabidopsis thaliana protein match is: galactosyltransferase family protein (TAIR:AT1G74800.1); Has 1757 Blast hits to 1750 proteins in 93 species: Archae - 0; Bacteria - 4; Metazoa - 1402; Fungi - 6; Plants - 315; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT5G62620.1p  transcript_id AT5G62620.1  protein_id AT5G62620.1p  transcript_id AT5G62620.1  
At5g62623	chr5:025140727	0.0	W/25140727-25140784,25141054-25141262	AT5G62623.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62627.1); Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G62623.1p  transcript_id AT5G62623.1  protein_id AT5G62623.1p  transcript_id AT5G62623.1  
At5g62627	chr5:025142311	0.0	W/25142311-25142368,25142715-25142902	AT5G62627.1  CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65352.1); Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G62627.1p  transcript_id AT5G62627.1  protein_id AT5G62627.1p  transcript_id AT5G62627.1  
At5g62630	chr5:025146297	0.0	C/25146297-25146390,25146018-25146178,25145133-25145918,25144816-25145029,25144554-25144732,25144222-25144460,25143719-25144136	AT5G62630.1  CDS  gene_syn HIPL2, HIPL2 PROTEIN PRECURSOR, MRG21.5, MRG21_5  gene HIPL2  go_component plasma membrane|GO:0005886|17317660|IDA  go_component anchored to plasma membrane|GO:0046658|12805588|IDA  go_function catalytic activity|GO:0003824||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  product HIPL2 (HIPL2 PROTEIN PRECURSOR); catalytic  note HIPL2 PROTEIN PRECURSOR (HIPL2); FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Soluble quinoprotein glucose dehydrogenase (InterPro:IPR011041), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: catalytic (TAIR:AT1G74790.1); Has 2591 Blast hits to 2586 proteins in 505 species: Archae - 33; Bacteria - 1116; Metazoa - 122; Fungi - 4; Plants - 249; Viruses - 0; Other Eukaryotes - 1067 (source: NCBI BLink).  protein_id AT5G62630.1p  transcript_id AT5G62630.1  protein_id AT5G62630.1p  transcript_id AT5G62630.1  
At5g62640	chr5:025152271	0.0	C/25152271-25152351,25151760-25151853,25151498-25151583,25151332-25151387,25151170-25151221,25151012-25151093,25150538-25150893,25149909-25150418,25149584-25149811	AT5G62640.2  CDS  gene_syn EARLY FLOWERING 5, ELF5, MRG21.6, MRG21_6  function nuclear targeted protein involved in flowering time regulation that affects flowering time independent of FLC  go_component nucleus|GO:0005634|15125772|IDA  go_process photoperiodism, flowering|GO:0048573|15125772|IMP  go_function molecular_function|GO:0003674||ND  product proline-rich family protein  note EARLY FLOWERING 5 (ELF5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photoperiodism, flowering; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; Has 50895 Blast hits to 29152 proteins in 1040 species: Archae - 66; Bacteria - 5136; Metazoa - 25118; Fungi - 7062; Plants - 6261; Viruses - 1491; Other Eukaryotes - 5761 (source: NCBI BLink).  protein_id AT5G62640.2p  transcript_id AT5G62640.2  protein_id AT5G62640.2p  transcript_id AT5G62640.2  
At5g62640	chr5:025152271	0.0	C/25152271-25152351,25151760-25151853,25151498-25151583,25151332-25151387,25151170-25151221,25151012-25151093,25150538-25150911,25149909-25150418,25149584-25149811	AT5G62640.1  CDS  gene_syn EARLY FLOWERING 5, ELF5, MRG21.6, MRG21_6  function nuclear targeted protein involved in flowering time regulation that affects flowering time independent of FLC  go_component nucleus|GO:0005634|15125772|IDA  go_process photoperiodism, flowering|GO:0048573|15125772|IMP  go_function molecular_function|GO:0003674||ND  product proline-rich family protein  note EARLY FLOWERING 5 (ELF5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photoperiodism, flowering; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; Has 50039 Blast hits to 28841 proteins in 1018 species: Archae - 60; Bacteria - 4939; Metazoa - 24690; Fungi - 7029; Plants - 6151; Viruses - 1497; Other Eukaryotes - 5673 (source: NCBI BLink).  protein_id AT5G62640.1p  transcript_id AT5G62640.1  protein_id AT5G62640.1p  transcript_id AT5G62640.1  
At5g62640	chr5:025152271	0.0	C/25152271-25152351,25151917-25151991,25151760-25151853,25151513-25151583,25151332-25151387,25151170-25151221,25151012-25151093,25150538-25150911,25149909-25150418,25149584-25149811	AT5G62640.3  CDS  gene_syn EARLY FLOWERING 5, ELF5, MRG21.6, MRG21_6  function nuclear targeted protein involved in flowering time regulation that affects flowering time independent of FLC  go_component nucleus|GO:0005634|15125772|IDA  go_process photoperiodism, flowering|GO:0048573|15125772|IMP  go_function molecular_function|GO:0003674||ND  product proline-rich family protein  note proline-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photoperiodism, flowering; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages.  protein_id AT5G62640.3p  transcript_id AT5G62640.3  protein_id AT5G62640.3p  transcript_id AT5G62640.3  
At5g62650	chr5:025155508	0.0	C/25155508-25155872,25155318-25155412,25155046-25155125,25154917-25154958,25154710-25154837,25154288-25154468,25153854-25154032,25153244-25153462,25152873-25153173	AT5G62650.1  CDS  gene_syn MRG21.7, MRG21_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 14 Blast hits to 14 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G62650.1p  transcript_id AT5G62650.1  protein_id AT5G62650.1p  transcript_id AT5G62650.1  
At5g62660	chr5:025156326	0.0	C/25156326-25157465	AT5G62660.1  CDS  gene_syn MRG21.8, MRG21_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G62510.1); Has 982 Blast hits to 958 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 980; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G62660.1p  transcript_id AT5G62660.1  protein_id AT5G62660.1p  transcript_id AT5G62660.1  
At5g62670	chr5:025159495	0.0	W/25159495-25159548,25159643-25159762,25159888-25159986,25160086-25160223,25160374-25160508,25160648-25160827,25160944-25161150,25161373-25161492,25161577-25161696,25161797-25161919,25162006-25162110,25162201-25162345,25162596-25162760,25162855-25163093,25163247-25163279,25163404-25163485,25163619-25163779,25163966-25164151,25164244-25164426,25164569-25164747,25164861-25164957	AT5G62670.1  CDS  gene_syn AHA11, Arabidopsis H(+)-ATPase 11, MRG21.9, MRG21_9  gene AHA11  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process ATP biosynthetic process|GO:0006754||IEA  go_process cation transport|GO:0006812||IEA  go_process metabolic process|GO:0008152||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_function ATPase activity|GO:0016887||ISS  product AHA11 (Arabidopsis H(+)-ATPase 11); ATPase  note Arabidopsis H(+)-ATPase 11 (AHA11); FUNCTIONS IN: ATPase activity; INVOLVED IN: cation transport, metabolic process, ATP biosynthetic process; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type, plasma-membrane proton-efflux (InterPro:IPR006534), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: AHA4; ATPase/ hydrogen-exporting ATPase, phosphorylative mechanism (TAIR:AT3G47950.1); Has 20808 Blast hits to 18623 proteins in 1829 species: Archae - 405; Bacteria - 11444; Metazoa - 3332; Fungi - 1581; Plants - 1110; Viruses - 3; Other Eukaryotes - 2933 (source: NCBI BLink).  protein_id AT5G62670.1p  transcript_id AT5G62670.1  protein_id AT5G62670.1p  transcript_id AT5G62670.1  
At5g62680	chr5:025167660	0.0	C/25167660-25167822,25167074-25167291,25166423-25166982,25165430-25166339	AT5G62680.1  CDS  gene_syn MRG21.10, MRG21_10  go_component plasma membrane|GO:0005886|17317660|IDA  go_process oligopeptide transport|GO:0006857||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT3G47960.1); Has 2239 Blast hits to 2138 proteins in 357 species: Archae - 0; Bacteria - 317; Metazoa - 468; Fungi - 238; Plants - 1131; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT5G62680.1p  transcript_id AT5G62680.1  protein_id AT5G62680.1p  transcript_id AT5G62680.1  
At5g62690	chr5:025181560	0.0	W/25181560-25181953,25182042-25182311,25182813-25183501	AT5G62690.1  CDS  gene_syn MRG21.11, MRG21_11, TUB2  gene TUB2  function encodes tubulin beta-2/beta-3 chain  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function GTPase activity|GO:0003924||IEA  go_function structural molecule activity|GO:0005198||IEA  go_function GTP binding|GO:0005525||IEA  go_component tubulin complex|GO:0045298|1498609|ISS  go_process response to cold|GO:0009409|12231943|IEP  go_function structural molecule activity|GO:0005198||ISS  product TUB2; GTP binding / GTPase/ structural molecule  note TUB2; FUNCTIONS IN: structural molecule activity, GTP binding, GTPase activity; INVOLVED IN: response to cadmium ion, response to salt stress, response to cold; LOCATED IN: tubulin complex, nucleolus, cell wall, plasma membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase (InterPro:IPR003008), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: TUB3; GTP binding / GTPase/ structural molecule (TAIR:AT5G62700.1); Has 17394 Blast hits to 17340 proteins in 3751 species: Archae - 30; Bacteria - 214; Metazoa - 3621; Fungi - 9661; Plants - 1015; Viruses - 0; Other Eukaryotes - 2853 (source: NCBI BLink).  protein_id AT5G62690.1p  transcript_id AT5G62690.1  protein_id AT5G62690.1p  transcript_id AT5G62690.1  
At5g62700	chr5:025184501	0.0	W/25184501-25184894,25184985-25185254,25185738-25186426	AT5G62700.1  CDS  gene_syn MRG21.12, TUB3, Tubulin beta-3, atgcp3  gene TUB3  function encodes tubulin beta-2/beta-3 chain  go_component cell wall|GO:0005618|16287169|IDA  go_function GTPase activity|GO:0003924||IEA  go_function structural molecule activity|GO:0005198||IEA  go_function GTP binding|GO:0005525||IEA  go_component tubulin complex|GO:0045298|1498609|TAS  go_process response to cold|GO:0009409|12231943|IEP  go_function structural molecule activity|GO:0005198||ISS  product TUB3; GTP binding / GTPase/ structural molecule  note TUB3; FUNCTIONS IN: structural molecule activity, GTP binding, GTPase activity; INVOLVED IN: response to cold; LOCATED IN: tubulin complex, cell wall; EXPRESSED IN: cultured cell, seed; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase (InterPro:IPR003008), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: TUB2; GTP binding / GTPase/ structural molecule (TAIR:AT5G62690.1); Has 17394 Blast hits to 17340 proteins in 3751 species: Archae - 30; Bacteria - 214; Metazoa - 3621; Fungi - 9661; Plants - 1015; Viruses - 0; Other Eukaryotes - 2853 (source: NCBI BLink).  protein_id AT5G62700.1p  transcript_id AT5G62700.1  protein_id AT5G62700.1p  transcript_id AT5G62700.1  
At5g62710	chr5:025187438	0.0	W/25187438-25187519,25187596-25187731,25187820-25187891,25187975-25188046,25188132-25188203,25188289-25188360,25188444-25188515,25188644-25188750,25188842-25189018,25189113-25189445,25189531-25189785,25189869-25190002,25190095-25190325	AT5G62710.1  CDS  gene_syn MQB2.1, MQB2_1  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function protein kinase activity|GO:0004672||ISS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein / protein kinase family protein  note leucine-rich repeat family protein / protein kinase family protein; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: FEI2 (FEI 2); kinase (TAIR:AT2G35620.1); Has 118830 Blast hits to 91509 proteins in 3239 species: Archae - 81; Bacteria - 8918; Metazoa - 40161; Fungi - 6616; Plants - 45849; Viruses - 433; Other Eukaryotes - 16772 (source: NCBI BLink).  protein_id AT5G62710.1p  transcript_id AT5G62710.1  protein_id AT5G62710.1p  transcript_id AT5G62710.1  
At5g62720	chr5:025191969	0.0	W/25191969-25192269,25193291-25193424,25193925-25194072,25194577-25194683,25194804-25194845	AT5G62720.1  CDS  gene_syn MQB2.4, MQB2_4  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast inner membrane|GO:0009706|12766230|IDA  go_component integral to membrane|GO:0016021||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane HPP family protein  note integral membrane HPP family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HPP (InterPro:IPR007065); BEST Arabidopsis thaliana protein match is: integral membrane HPP family protein (TAIR:AT3G47980.1); Has 1129 Blast hits to 1129 proteins in 267 species: Archae - 0; Bacteria - 489; Metazoa - 0; Fungi - 32; Plants - 30; Viruses - 0; Other Eukaryotes - 578 (source: NCBI BLink).  protein_id AT5G62720.1p  transcript_id AT5G62720.1  protein_id AT5G62720.1p  transcript_id AT5G62720.1  
At5g62720	chr5:025191969	0.0	W/25191969-25192269,25193291-25193424,25193925-25194092	AT5G62720.2  CDS  gene_syn MQB2.4, MQB2_4  go_component chloroplast inner membrane|GO:0009706|12766230|IDA  go_component integral to membrane|GO:0016021||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane HPP family protein  note integral membrane HPP family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast inner membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HPP (InterPro:IPR007065); BEST Arabidopsis thaliana protein match is: integral membrane HPP family protein (TAIR:AT3G47980.1); Has 583 Blast hits to 583 proteins in 238 species: Archae - 0; Bacteria - 440; Metazoa - 0; Fungi - 16; Plants - 29; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT5G62720.2p  transcript_id AT5G62720.2  protein_id AT5G62720.2p  transcript_id AT5G62720.2  
At5g62730	chr5:025197494	0.0	W/25197494-25197589,25197715-25197820,25198038-25198255,25198684-25200033	AT5G62730.1  CDS  gene_syn MQB2.30, MQB2_30  go_component membrane|GO:0016020||IEA  go_process oligopeptide transport|GO:0006857||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ATNRT1:2 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1:2); calcium ion binding / transporter (TAIR:AT1G69850.1); Has 4099 Blast hits to 4028 proteins in 753 species: Archae - 0; Bacteria - 1818; Metazoa - 425; Fungi - 268; Plants - 1117; Viruses - 0; Other Eukaryotes - 471 (source: NCBI BLink).  protein_id AT5G62730.1p  transcript_id AT5G62730.1  protein_id AT5G62730.1p  transcript_id AT5G62730.1  
At5g62740	chr5:025201320	0.0	W/25201320-25201508,25201606-25201726,25201822-25201913,25201996-25202092,25202174-25202535	AT5G62740.1  CDS  gene_syn MQB2.40, MQB2_40  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  product band 7 family protein  note band 7 family protein; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: band 7 family protein (TAIR:AT1G69840.6); Has 3743 Blast hits to 3742 proteins in 1083 species: Archae - 120; Bacteria - 2217; Metazoa - 242; Fungi - 201; Plants - 160; Viruses - 2; Other Eukaryotes - 801 (source: NCBI BLink).  protein_id AT5G62740.1p  transcript_id AT5G62740.1  protein_id AT5G62740.1p  transcript_id AT5G62740.1  
At5g62750	chr5:025203677	0.0	C/25203677-25204051	AT5G62750.1  CDS  gene_syn MQB2.7, MQB2_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 26424 Blast hits to 11098 proteins in 651 species: Archae - 43; Bacteria - 1428; Metazoa - 10546; Fungi - 2226; Plants - 945; Viruses - 208; Other Eukaryotes - 11028 (source: NCBI BLink).  protein_id AT5G62750.1p  transcript_id AT5G62750.1  protein_id AT5G62750.1p  transcript_id AT5G62750.1  
At5g62760	chr5:025208659	0.0	C/25208659-25209393,25208458-25208578,25208207-25208319,25208005-25208103,25207833-25207902,25206174-25206187	AT5G62760.2  CDS  gene_syn MQB2.8, MQB2_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product nuclear protein ZAP-related  note nuclear protein ZAP-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; Has 6801 Blast hits to 4598 proteins in 368 species: Archae - 2; Bacteria - 350; Metazoa - 2889; Fungi - 985; Plants - 1402; Viruses - 398; Other Eukaryotes - 775 (source: NCBI BLink).  protein_id AT5G62760.2p  transcript_id AT5G62760.2  protein_id AT5G62760.2p  transcript_id AT5G62760.2  
At5g62760	chr5:025208659	0.0	C/25208659-25209393,25208458-25208578,25208207-25208319,25208005-25208103,25207833-25207902,25207372-25207478,25206137-25206187,25205872-25205976,25205614-25205658,25205391-25205478,25205090-25205292,25204730-25204978	AT5G62760.1  CDS  gene_syn MQB2.8, MQB2_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product nuclear protein ZAP-related  note nuclear protein ZAP-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; Has 6929 Blast hits to 4727 proteins in 390 species: Archae - 2; Bacteria - 378; Metazoa - 2960; Fungi - 985; Plants - 1402; Viruses - 396; Other Eukaryotes - 806 (source: NCBI BLink).  protein_id AT5G62760.1p  transcript_id AT5G62760.1  protein_id AT5G62760.1p  transcript_id AT5G62760.1  
At5g62770	chr5:025210564	0.0	W/25210564-25211370	AT5G62770.1  CDS  gene_syn MQB2.9, MQB2_9  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1645 (InterPro:IPR012442); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27880.1); Has 113 Blast hits to 113 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 101; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G62770.1p  transcript_id AT5G62770.1  protein_id AT5G62770.1p  transcript_id AT5G62770.1  
At5g62780	chr5:025213386	0.0	W/25213386-25213554,25213683-25214137	AT5G62780.1  CDS  gene_syn MQB2.10, MQB2_10  go_function heat shock protein binding|GO:0031072||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: heat shock protein binding (TAIR:AT4G19580.1); Has 1282 Blast hits to 1266 proteins in 255 species: Archae - 18; Bacteria - 170; Metazoa - 545; Fungi - 115; Plants - 194; Viruses - 5; Other Eukaryotes - 235 (source: NCBI BLink).  protein_id AT5G62780.1p  transcript_id AT5G62780.1  protein_id AT5G62780.1p  transcript_id AT5G62780.1  
At5g62790	chr5:025217202	0.0	C/25217202-25217292,25216812-25217005,25216571-25216657,25216210-25216335,25216082-25216144,25215837-25215986,25215652-25215719,25215447-25215558,25215256-25215360,25215048-25215169,25214612-25214758,25214358-25214526	AT5G62790.1  CDS  gene_syn 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE, DXR, MQB2.90, MQB2_90, PDE129, PIGMENT-DEFECTIVE EMBRYO 129  gene DXR  function 1-Deoxy-d-xylulose 5-phosphate reductoisomerase (DXR) catalyzes the first committed step of the 2-C-methyl-d-erythritol 4-phosphate pathway for isoprenoid biosynthesis. In Arabidopsis, DXR is encoded by a single-copy gene. Arabidopsis DXR is targeted to plastids and localizes into chloroplasts of leaf cells. DXR knockout or strongly silenced lines have a seedling lethal, albino phenotype. Transgenic, partially silenced lines expressing 35S:DXR have a variegated phenotype.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component chloroplast|GO:0009507|12177470|IDA  go_process isoprenoid biosynthetic process|GO:0008299|10428488|TAS  go_process response to light stimulus|GO:0009416|12177470|IEP  go_process response to light stimulus|GO:0009416|15863698|IEP  go_process isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway|GO:0019288|12177470|IDA  go_process isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway|GO:0019288|16941216|TAS  go_function 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity|GO:0030604|12177470|IDA  product DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE); 1-deoxy-D-xylulose-5-phosphate reductoisomerase  note 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE (DXR); FUNCTIONS IN: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity; INVOLVED IN: response to cadmium ion, response to light stimulus, isoprenoid biosynthetic process, isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal (InterPro:IPR013512), 1-deoxy-D-xylulose 5-phosphate reductoisomerase (InterPro:IPR003821), 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal (InterPro:IPR013644), NAD(P)-binding (InterPro:IPR016040); Has 4875 Blast hits to 4875 proteins in 1163 species: Archae - 0; Bacteria - 2311; Metazoa - 6; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 2485 (source: NCBI BLink).  protein_id AT5G62790.1p  transcript_id AT5G62790.1  protein_id AT5G62790.1p  transcript_id AT5G62790.1  
At5g62800	chr5:025218663	0.0	W/25218663-25218830,25218954-25219627,25219763-25219967	AT5G62800.1  CDS  gene_syn MQB2.12, MQB2_12  go_component nucleus|GO:0005634||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_process multicellular organismal development|GO:0007275||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_process multicellular organismal development|GO:0007275||ISS  product seven in absentia (SINA) family protein  note seven in absentia (SINA) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Zinc finger, SIAH-type (InterPro:IPR013010), Seven in absentia protein, TRAF-like domain (InterPro:IPR018121), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven in absentia protein (InterPro:IPR004162); BEST Arabidopsis thaliana protein match is: seven in absentia (SINA) protein, putative (TAIR:AT5G37890.1); Has 1256 Blast hits to 1249 proteins in 630 species: Archae - 0; Bacteria - 0; Metazoa - 953; Fungi - 9; Plants - 248; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT5G62800.1p  transcript_id AT5G62800.1  protein_id AT5G62800.1p  transcript_id AT5G62800.1  
At5g62810	chr5:025220323	0.0	W/25220323-25220395,25220673-25220899,25220982-25221024,25221114-25221292,25221718-25221907,25222034-25222123,25222262-25222335,25222497-25222542,25222632-25222702,25222818-25222862,25222959-25223027,25223155-25223571	AT5G62810.1  CDS  gene_syn ATPEX14, MQB2.13, MQB2_13, PED2, PEROXISOME DEFECTIVE 2, PEX14  gene PEX14  function mutant has a defect in the intracellular transport of thiolase from the cytosol to glyoxysomes (formerly known as ped2)  go_component peroxisome|GO:0005777|17951448|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component peroxisome|GO:0005777|11060021|IDA  go_component cytosol|GO:0005829|11060021|IDA  go_process protein targeting to peroxisome|GO:0006625|11060021|TAS  go_process peroxisome organization|GO:0007031|11060021|IMP  go_function protein binding|GO:0005515|11978862|IPI  go_function protein transporter activity|GO:0008565|11060021|ISS  product PEX14; protein binding / protein transporter  note PEX14; FUNCTIONS IN: protein transporter activity, protein binding; INVOLVED IN: protein targeting to peroxisome, peroxisome organization; LOCATED IN: cytosol, peroxisome, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peroxisome membrane anchor protein Pex14p, N-terminal (InterPro:IPR006785); BEST Arabidopsis thaliana protein match is: seven in absentia (SINA) family protein (TAIR:AT5G62800.1); Has 263 Blast hits to 257 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 82; Fungi - 104; Plants - 56; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT5G62810.1p  transcript_id AT5G62810.1  protein_id AT5G62810.1p  transcript_id AT5G62810.1  
At5g62820	chr5:025224336	0.0	C/25224336-25224898,25224108-25224243,25223828-25224022	AT5G62820.1  CDS  gene_syn MQB2.14, MQB2_14  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane protein, putative  note integral membrane protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36330.1); Has 143 Blast hits to 143 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 137; Viruses - 1; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G62820.1p  transcript_id AT5G62820.1  protein_id AT5G62820.1p  transcript_id AT5G62820.1  
At5g62830	chr5:025226168	0.0	C/25226168-25226782	AT5G62830.1  CDS  gene_syn MQB2.15, MQB2_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, F mature embryo stage, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G17560.1); Has 479 Blast hits to 466 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 477; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G62830.1p  transcript_id AT5G62830.1  protein_id AT5G62830.1p  transcript_id AT5G62830.1  
At5g62840	chr5:025229443	0.0	C/25229443-25229672,25228899-25229144,25228712-25228793,25228296-25228631	AT5G62840.1  CDS  gene_syn MQB2.16, MQB2_16  go_component chloroplast|GO:0009507||IEA  go_process metabolic process|GO:0008152||ISS  go_function catalytic activity|GO:0003824||ISS  product phosphoglycerate/bisphosphoglycerate mutase family protein  note phosphoglycerate/bisphosphoglycerate mutase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078), Twin-arginine translocation pathway signal (InterPro:IPR006311); Has 61 Blast hits to 61 proteins in 20 species: Archae - 0; Bacteria - 17; Metazoa - 0; Fungi - 2; Plants - 29; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT5G62840.1p  transcript_id AT5G62840.1  protein_id AT5G62840.1p  transcript_id AT5G62840.1  
At5g62848	chr5:025230568	0.0	C/25230568-25230667	AT5G62848.1  miRNA  gene_syn MICRORNA420, MIR420  gene MIR420  function Encodes a microRNA. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence:TAAACTAATCACGGAAATGCA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR420 (MICRORNA420); miRNA  transcript_id AT5G62848.1  
At5g62850	chr5:025231485	0.0	C/25231485-25231527,25231355-25231391,25231068-25231284,25230684-25230845,25230434-25230553,25230204-25230347	AT5G62850.1  CDS  gene_syn AtVEX1, MQB2.17, MQB2_17, VEGETATIVE CELL EXPRESSED1  gene AtVEX1  function Encodes a protein that is expressed in vegetative cells of pollen.  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  product AtVEX1 (VEGETATIVE CELL EXPRESSED1)  note VEGETATIVE CELL EXPRESSED1 (AtVEX1); INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: MtN3 and saliva related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), MtN3 and saliva related transmembrane protein (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: nodulin MtN3 family protein (TAIR:AT3G28007.1); Has 556 Blast hits to 528 proteins in 94 species: Archae - 0; Bacteria - 4; Metazoa - 206; Fungi - 2; Plants - 294; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT5G62850.1p  transcript_id AT5G62850.1  protein_id AT5G62850.1p  transcript_id AT5G62850.1  
At5g62860	chr5:025232632	0.0	W/25232632-25232787,25233041-25233529,25234079-25234567	AT5G62860.1  CDS  gene_syn MQB2.19, MQB2_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48020.1); Has 212 Blast hits to 206 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 212; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G62860.1p  transcript_id AT5G62860.1  protein_id AT5G62860.1p  transcript_id AT5G62860.1  
At5g62880	chr5:025237236	0.0	W/25237236-25237340,25237801-25237888,25238033-25238142,25238251-25238314,25238405-25238469,25238563-25238628,25238700-25238812,25238903-25238939	AT5G62880.1  CDS  gene_syn ARAC10, ATRAC10, ATROP11, MQB2.180, MQB2_180, RHO-RELATED PROTEIN FROM PLANTS 11  gene ARAC10  function A member of ROP GTPase gene family.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525|9349271|TAS  product ARAC10; GTP binding  note ARAC10; FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Ras small GTPase, Rab type (InterPro:IPR003579), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Ras small GTPase, Rho type (InterPro:IPR003578); BEST Arabidopsis thaliana protein match is: ROP10 (RHO-RELATED PROTEIN FROM PLANTS 10); GTP binding / GTPase (TAIR:AT3G48040.1); Has 19401 Blast hits to 19375 proteins in 556 species: Archae - 8; Bacteria - 39; Metazoa - 10816; Fungi - 2334; Plants - 1724; Viruses - 19; Other Eukaryotes - 4461 (source: NCBI BLink).  protein_id AT5G62880.1p  transcript_id AT5G62880.1  protein_id AT5G62880.1p  transcript_id AT5G62880.1  
At5g62890	chr5:025243723	0.0	W/25243723-25243831,25244349-25244446,25244545-25244721,25244845-25244945,25245072-25245147,25245231-25245290,25245394-25245578,25245741-25245837,25245952-25246038,25246125-25246183,25246273-25246364,25246459-25246697,25246857-25247075	AT5G62890.1  CDS  gene_syn MQB2.190, MQB2_190  go_component cell wall|GO:0005618|16287169|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_function transmembrane transporter activity|GO:0022857||ISS  product permease, putative  note permease, putative; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: cell wall, vacuole, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: xanthine/uracil permease family protein (TAIR:AT5G49990.1); Has 4980 Blast hits to 4962 proteins in 950 species: Archae - 37; Bacteria - 3560; Metazoa - 307; Fungi - 91; Plants - 296; Viruses - 1; Other Eukaryotes - 688 (source: NCBI BLink).  protein_id AT5G62890.1p  transcript_id AT5G62890.1  protein_id AT5G62890.1p  transcript_id AT5G62890.1  
At5g62890	chr5:025243723	0.0	W/25243723-25243831,25244349-25244446,25244545-25244721,25244845-25244945,25245072-25245147,25245231-25245290,25245394-25245578,25245741-25245837,25245952-25246038,25246125-25246183,25246273-25246364,25246459-25246697,25246857-25247075	AT5G62890.2  CDS  gene_syn MQB2.190, MQB2_190  go_component cell wall|GO:0005618|16287169|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_function transmembrane transporter activity|GO:0022857||ISS  product permease, putative  note permease, putative; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: cell wall, vacuole, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: xanthine/uracil permease family protein (TAIR:AT5G49990.1); Has 4980 Blast hits to 4962 proteins in 950 species: Archae - 37; Bacteria - 3560; Metazoa - 307; Fungi - 91; Plants - 296; Viruses - 1; Other Eukaryotes - 688 (source: NCBI BLink).  protein_id AT5G62890.2p  transcript_id AT5G62890.2  protein_id AT5G62890.2p  transcript_id AT5G62890.2  
At5g62890	chr5:025243723	0.0	W/25243723-25243831,25244349-25244446,25244545-25244721,25244845-25244945,25245072-25245147,25245231-25245290,25245394-25245578,25245741-25245837,25245952-25246038,25246125-25246183,25246273-25246364,25246459-25246697,25246857-25247075	AT5G62890.3  CDS  gene_syn MQB2.190, MQB2_190  go_component cell wall|GO:0005618|16287169|IDA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_function transmembrane transporter activity|GO:0022857||ISS  product permease, putative  note permease, putative; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: cell wall, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: xanthine/uracil permease family protein (TAIR:AT5G49990.1); Has 4980 Blast hits to 4962 proteins in 950 species: Archae - 37; Bacteria - 3560; Metazoa - 307; Fungi - 91; Plants - 296; Viruses - 1; Other Eukaryotes - 688 (source: NCBI BLink).  protein_id AT5G62890.3p  transcript_id AT5G62890.3  protein_id AT5G62890.3p  transcript_id AT5G62890.3  
At5g62890	chr5:025243723	0.0	W/25243723-25243831,25244349-25244446,25244545-25244721,25244845-25244945,25245072-25245147,25245231-25245290,25245394-25245578,25245741-25245837,25245952-25246038,25246125-25246183,25246273-25246364,25246459-25246748	AT5G62890.4  CDS  gene_syn MQB2.190, MQB2_190  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_function transmembrane transporter activity|GO:0022857||ISS  product permease, putative  note permease, putative; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: xanthine/uracil permease family protein (TAIR:AT5G49990.1); Has 4978 Blast hits to 4960 proteins in 950 species: Archae - 37; Bacteria - 3560; Metazoa - 305; Fungi - 91; Plants - 296; Viruses - 1; Other Eukaryotes - 688 (source: NCBI BLink).  protein_id AT5G62890.4p  transcript_id AT5G62890.4  protein_id AT5G62890.4p  transcript_id AT5G62890.4  
At5g62900	chr5:025248872	0.0	W/25248872-25249118,25249376-25249506,25249618-25249725	AT5G62900.1  CDS  gene_syn MQB2.22, MQB2_22  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G50090.1); Has 83 Blast hits to 83 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G62900.1p  transcript_id AT5G62900.1  protein_id AT5G62900.1p  transcript_id AT5G62900.1  
At5g62910	chr5:025250830	0.0	W/25250830-25250898,25250995-25251061,25251168-25252015	AT5G62910.1  CDS  gene_syn MQB2.23, MQB2_23  go_component chloroplast|GO:0009507||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT3G48070.2); Has 652 Blast hits to 540 proteins in 136 species: Archae - 0; Bacteria - 6; Metazoa - 264; Fungi - 175; Plants - 76; Viruses - 4; Other Eukaryotes - 127 (source: NCBI BLink).  protein_id AT5G62910.1p  transcript_id AT5G62910.1  protein_id AT5G62910.1p  transcript_id AT5G62910.1  
At5g62920	chr5:025254008	0.0	C/25254008-25254158,25253848-25253924,25253691-25253768,25253532-25253602,25252745-25252928	AT5G62920.1  CDS  gene_syn ARR6, MQB2.220, MQB2_220, RESPONSE REGULATOR 6  gene ARR6  function Encodes a Type-A response regulator that is responsive to cytokinin treatment. Its C-ter domain is very short in comparison to other Arabidopsis ARRs (17 total). Arr6 protein is stabilized by cytokinin.  go_component nucleus|GO:0005634|18642946|IDA  go_process two-component signal transduction system (phosphorelay)|GO:0000160|9482949|TAS  go_process response to cytokinin stimulus|GO:0009735|11115887|IEP  go_process response to cytokinin stimulus|GO:0009735|16407152|IEP  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_process cytokinin mediated signaling|GO:0009736|18065689|IMP  go_function two-component response regulator activity|GO:0000156|12068096|ISS  go_function two-component response regulator activity|GO:0000156|9482949|TAS  go_function two-component response regulator activity|GO:0000156||ISS  go_function transcription regulator activity|GO:0030528|12068096|TAS  product ARR6 (RESPONSE REGULATOR 6); transcription regulator/ two-component response regulator  note RESPONSE REGULATOR 6 (ARR6); FUNCTIONS IN: transcription regulator activity, two-component response regulator activity; INVOLVED IN: cytokinin mediated signaling, response to cytokinin stimulus, two-component signal transduction system (phosphorelay); LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver region (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5); transcription regulator/ two-component response regulator (TAIR:AT3G48100.1); Has 29550 Blast hits to 29224 proteins in 1537 species: Archae - 170; Bacteria - 24867; Metazoa - 12; Fungi - 367; Plants - 682; Viruses - 4; Other Eukaryotes - 3448 (source: NCBI BLink).  protein_id AT5G62920.1p  transcript_id AT5G62920.1  protein_id AT5G62920.1p  transcript_id AT5G62920.1  
At5g62930	chr5:025254912	0.0	W/25254912-25255088,25255500-25255640,25255732-25255808,25255908-25256072,25256189-25256357	AT5G62930.1  CDS  gene_syn MQB2.25, MQB2_25  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity|GO:0016787||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_component cellular_component|GO:0005575||ND  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Esterase, SGNH hydrolase-type, subgroup (InterPro:IPR013831), Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: carboxylesterase/ hydrolase/ hydrolase, acting on ester bonds (TAIR:AT5G45920.1); Has 362 Blast hits to 361 proteins in 128 species: Archae - 0; Bacteria - 92; Metazoa - 65; Fungi - 98; Plants - 78; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT5G62930.1p  transcript_id AT5G62930.1  protein_id AT5G62930.1p  transcript_id AT5G62930.1  
At5g62940	chr5:025258457	0.0	C/25258457-25258504,25257183-25258253	AT5G62940.1  CDS  gene_syn MQB2.26, MQB2_26  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product Dof-type zinc finger domain-containing protein  note Dof-type zinc finger domain-containing protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT4G24060.1); Has 1418 Blast hits to 1288 proteins in 115 species: Archae - 0; Bacteria - 47; Metazoa - 128; Fungi - 59; Plants - 640; Viruses - 0; Other Eukaryotes - 544 (source: NCBI BLink).  protein_id AT5G62940.1p  transcript_id AT5G62940.1  protein_id AT5G62940.1p  transcript_id AT5G62940.1  
At5g62950	chr5:025263026	0.0	C/25263026-25263033,25262830-25262947,25262598-25262750,25262355-25262495	AT5G62950.1  CDS  gene_syn MQB2.27, MQB2_27  go_process cellular metabolic process|GO:0044237||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  product catalytic/ nucleotide binding  note catalytic/ nucleotide binding; FUNCTIONS IN: catalytic activity, nucleotide binding; INVOLVED IN: cellular metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HRDC-like (InterPro:IPR010997), RNA polymerase II, Rpb4, core (InterPro:IPR006590); BEST Arabidopsis thaliana protein match is: catalytic/ nucleotide binding (TAIR:AT3G28956.1); Has 149 Blast hits to 149 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 96; Fungi - 27; Plants - 23; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G62950.1p  transcript_id AT5G62950.1  protein_id AT5G62950.1p  transcript_id AT5G62950.1  
At5g62950	chr5:025263026	0.0	C/25263026-25263033,25262830-25262947,25262598-25262750,25262447-25262488	AT5G62950.2  CDS  gene_syn MQB2.27, MQB2_27  go_process cellular metabolic process|GO:0044237||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  product catalytic/ nucleotide binding  note catalytic/ nucleotide binding; FUNCTIONS IN: nucleotide binding, catalytic activity; INVOLVED IN: cellular metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HRDC-like (InterPro:IPR010997), RNA polymerase II, Rpb4, core (InterPro:IPR006590); BEST Arabidopsis thaliana protein match is: catalytic/ nucleotide binding (TAIR:AT3G28956.1); Has 88 Blast hits to 88 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 61; Fungi - 4; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G62950.2p  transcript_id AT5G62950.2  protein_id AT5G62950.2p  transcript_id AT5G62950.2  
At5g62960	chr5:025269444	0.0	W/25269444-25269847,25270384-25270417,25270514-25270705,25270793-25270882,25270956-25271021,25271103-25271194,25271274-25271321,25271416-25271533	AT5G62960.1  CDS  gene_syn MJH22.1, MJH22_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10660.4); Has 89 Blast hits to 88 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G62960.1p  transcript_id AT5G62960.1  protein_id AT5G62960.1p  transcript_id AT5G62960.1  
At5g62970	chr5:025272033	0.0	W/25272033-25272950,25273023-25273163,25273247-25273537	AT5G62970.1  CDS  gene_syn MJH22.2, MJH22_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G56410.1); Has 1002 Blast hits to 970 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 0; Plants - 974; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT5G62970.1p  transcript_id AT5G62970.1  protein_id AT5G62970.1p  transcript_id AT5G62970.1  
At5g62980	chr5:025276384	0.0	W/25276384-25276580,25276885-25277083	AT5G62980.1  CDS  gene_syn MJH22.3, MJH22_3  go_process folic acid and derivative metabolic process|GO:0006760||IEA  go_function dihydroneopterin aldolase activity|GO:0004150||IEA  go_component cellular_component|GO:0005575||ND  go_process folic acid and derivative metabolic process|GO:0006760||ISS  go_function dihydroneopterin aldolase activity|GO:0004150||ISS  product dihydroneopterin aldolase, putative  note dihydroneopterin aldolase, putative; FUNCTIONS IN: dihydroneopterin aldolase activity; INVOLVED IN: folic acid and derivative metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dihydroneopterin aldolase (InterPro:IPR006157), Dihydroneopterin aldolase family (InterPro:IPR006156); BEST Arabidopsis thaliana protein match is: dihydroneopterin aldolase, putative (TAIR:AT3G11750.1); Has 1470 Blast hits to 1470 proteins in 564 species: Archae - 4; Bacteria - 1099; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 307 (source: NCBI BLink).  protein_id AT5G62980.1p  transcript_id AT5G62980.1  protein_id AT5G62980.1p  transcript_id AT5G62980.1  
At5g62990	chr5:025277828	0.0	W/25277828-25279312	AT5G62990.1  CDS  gene_syn MJH22.4, MJH22_4, emb1692, embryo defective 1692  gene emb1692  go_component intracellular|GO:0005622||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product emb1692 (embryo defective 1692); ubiquitin thiolesterase  note embryo defective 1692 (emb1692); FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: intracellular; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (InterPro:IPR001578); BEST Arabidopsis thaliana protein match is: ubiquitin thiolesterase (TAIR:AT4G01037.1); Has 346 Blast hits to 344 proteins in 56 species: Archae - 0; Bacteria - 4; Metazoa - 46; Fungi - 19; Plants - 215; Viruses - 7; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT5G62990.1p  transcript_id AT5G62990.1  protein_id AT5G62990.1p  transcript_id AT5G62990.1  
At5g62998	chr5:025279882	0.0	C/25279882-25279995	AT5G62998.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G62998.1p  transcript_id AT5G62998.1  protein_id AT5G62998.1p  transcript_id AT5G62998.1  
At5g63000	chr5:025281425	0.0	C/25281425-25281463,25281036-25281140,25280592-25280847,25280399-25280476,25280151-25280278	AT5G63000.1  CDS  gene_syn MJH22.6, MJH22_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G63000.1p  transcript_id AT5G63000.1  protein_id AT5G63000.1p  transcript_id AT5G63000.1  
At5g63010	chr5:025281739	0.0	W/25281739-25282057,25282255-25282967	AT5G63010.1  CDS  gene_syn MJH22.7, MJH22_7  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product WD-40 repeat family protein  note WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1); protein binding / ubiquitin-protein ligase (TAIR:AT2G32950.1); Has 3047 Blast hits to 2853 proteins in 227 species: Archae - 2; Bacteria - 211; Metazoa - 1370; Fungi - 560; Plants - 447; Viruses - 0; Other Eukaryotes - 457 (source: NCBI BLink).  protein_id AT5G63010.1p  transcript_id AT5G63010.1  protein_id AT5G63010.1p  transcript_id AT5G63010.1  
At5g63020	chr5:025283384	0.0	C/25283384-25286002,25283252-25283299	AT5G63020.1  CDS  gene_syn MJH22.8, MJH22_8  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative  note disease resistance protein (CC-NBS-LRR class), putative; FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766), NB-ARC (InterPro:IPR002182); BEST Arabidopsis thaliana protein match is: RPS5 (RESISTANT TO P. SYRINGAE 5); nucleotide binding (TAIR:AT1G12220.1); Has 9621 Blast hits to 9256 proteins in 409 species: Archae - 8; Bacteria - 325; Metazoa - 976; Fungi - 88; Plants - 8108; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT5G63020.1p  transcript_id AT5G63020.1  protein_id AT5G63020.1p  transcript_id AT5G63020.1  
At5g63030	chr5:025286352	0.0	W/25286352-25286455,25287063-25287151,25287235-25287333,25287432-25287517	AT5G63030.1  CDS  gene_syn MJH22.9, MJH22_9  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  go_component cellular_component|GO:0005575||ND  go_function arsenate reductase (glutaredoxin) activity|GO:0008794||ISS  product glutaredoxin, putative  note glutaredoxin, putative; FUNCTIONS IN: electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity; INVOLVED IN: N-terminal protein myristoylation, cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutaredoxin active site (InterPro:IPR011767), Glutaredoxin, eukaryotic and viruses (InterPro:IPR011899), Glutaredoxin subgroup (InterPro:IPR014025), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin, putative (TAIR:AT5G40370.1); Has 6185 Blast hits to 6120 proteins in 898 species: Archae - 6; Bacteria - 2508; Metazoa - 541; Fungi - 307; Plants - 547; Viruses - 43; Other Eukaryotes - 2233 (source: NCBI BLink).  protein_id AT5G63030.1p  transcript_id AT5G63030.1  protein_id AT5G63030.1p  transcript_id AT5G63030.1  
At5g63040	chr5:025288504	0.0	W/25288504-25288587,25289034-25289103,25289198-25289596,25289692-25290026,25290114-25290326	AT5G63040.1  CDS  gene_syn MJH22.10, MJH22_10  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48460.1); Has 41 Blast hits to 41 proteins in 9 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G63040.1p  transcript_id AT5G63040.1  protein_id AT5G63040.1p  transcript_id AT5G63040.1  
At5g63040	chr5:025288950	0.0	W/25288950-25289103,25289198-25289596,25289692-25290026,25290114-25290326	AT5G63040.2  CDS  gene_syn MJH22.10, MJH22_10  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48460.1); Has 41 Blast hits to 41 proteins in 9 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G63040.2p  transcript_id AT5G63040.2  protein_id AT5G63040.2p  transcript_id AT5G63040.2  
At5g63050	chr5:025293109	0.0	W/25293109-25293135,25293303-25293436,25293720-25294181,25294385-25294799	AT5G63050.1  CDS  gene_syn EMB2759, MDC12.1, MDC12_1, embryo defective 2759  gene EMB2759  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product EMB2759 (embryo defective 2759)  note embryo defective 2759 (EMB2759); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 10 Blast hits to 10 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G63050.1p  transcript_id AT5G63050.1  protein_id AT5G63050.1p  transcript_id AT5G63050.1  
At5g63060	chr5:025296577	0.0	C/25296577-25296714,25296066-25296218,25295741-25295887,25295501-25295653,25295279-25295401,25295082-25295159	AT5G63060.1  CDS  gene_syn MDC12.2, MDC12_2  go_component chloroplast|GO:0009507|18431481|IDA  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product transporter  note transporter; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT4G08690.2); Has 1182 Blast hits to 1182 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 430; Fungi - 311; Plants - 340; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT5G63060.1p  transcript_id AT5G63060.1  protein_id AT5G63060.1p  transcript_id AT5G63060.1  
At5g63063	chr5:025297420	0.0	W/25297420-25297650	AT5G63063.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G63063.1p  transcript_id AT5G63063.1  protein_id AT5G63063.1p  transcript_id AT5G63063.1  
At5g63065	chr5:025297709	0.0	W/25297709-25297900	AT5G63065.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G63085.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G63065.1p  transcript_id AT5G63065.1  protein_id AT5G63065.1p  transcript_id AT5G63065.1  
At5g63070	chr5:025299178	0.0	C/25299178-25299660	AT5G63070.1  CDS  gene_syn MDC12.3, MDC12_3  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 40S ribosomal protein S15, putative  note 40S ribosomal protein S15, putative; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome; EXPRESSED IN: leaf whorl, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Ribosomal protein S15, eukaryotic/archaeal (InterPro:IPR005713), Ribosomal protein S19/S15 (InterPro:IPR002222); BEST Arabidopsis thaliana protein match is: RPS15 (CYTOSOLIC RIBOSOMAL PROTEIN S15); structural constituent of ribosome (TAIR:AT1G04270.1); Has 6239 Blast hits to 6239 proteins in 1868 species: Archae - 179; Bacteria - 2916; Metazoa - 207; Fungi - 159; Plants - 684; Viruses - 0; Other Eukaryotes - 2094 (source: NCBI BLink).  protein_id AT5G63070.1p  transcript_id AT5G63070.1  protein_id AT5G63070.1p  transcript_id AT5G63070.1  
At5g63080	chr5:025302112	0.0	C/25302112-25302321,25301853-25301990,25301581-25301743,25301366-25301483,25301193-25301262,25301028-25301108,25300893-25300949,25300687-25300798,25300026-25300465	AT5G63080.1  CDS  gene_syn MDC12.4, MDC12_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transcription factor activity|GO:0003700||ISS  product transcription factor jumonji (jmjC) domain-containing protein  note transcription factor jumonji (jmjC) domain-containing protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: transferase, transferring glycosyl groups (TAIR:AT1G78280.1); Has 1321 Blast hits to 1316 proteins in 215 species: Archae - 0; Bacteria - 213; Metazoa - 766; Fungi - 131; Plants - 81; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink).  protein_id AT5G63080.1p  transcript_id AT5G63080.1  protein_id AT5G63080.1p  transcript_id AT5G63080.1  
At5g63085	chr5:025302862	0.0	W/25302862-25303074,25303198-25303230	AT5G63085.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G63085.1p  transcript_id AT5G63085.1  protein_id AT5G63085.1p  transcript_id AT5G63085.1  
At5g63087	chr5:025304855	0.0	W/25304855-25305042,25305141-25305177	AT5G63087.1  CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G63087.1p  transcript_id AT5G63087.1  protein_id AT5G63087.1p  transcript_id AT5G63087.1  
At5g63090	chr5:025308723	0.0	C/25308723-25309283	AT5G63090.1  CDS  gene_syn LATERAL ORGAN BOUNDARIES, LOB, MDC12.5, MDC12_5  gene LOB  function Involved in lateral organ development  go_process organ boundary specification between lateral organs and the meristem|GO:0010199|12068116|IMP  product LOB (LATERAL ORGAN BOUNDARIES)  note LATERAL ORGAN BOUNDARIES (LOB); INVOLVED IN: organ boundary specification between lateral organs and the meristem; EXPRESSED IN: embryo, anther; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD25 (LOB DOMAIN-CONTAINING PROTEIN 25) (TAIR:AT3G27650.1); Has 571 Blast hits to 568 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 571; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G63090.1p  transcript_id AT5G63090.1  protein_id AT5G63090.1p  transcript_id AT5G63090.1  
At5g63090	chr5:025308723	0.0	C/25308723-25309283	AT5G63090.2  CDS  gene_syn LATERAL ORGAN BOUNDARIES, LOB, MDC12.5, MDC12_5  gene LOB  function Involved in lateral organ development  go_process organ boundary specification between lateral organs and the meristem|GO:0010199|12068116|IMP  product LOB (LATERAL ORGAN BOUNDARIES)  note LATERAL ORGAN BOUNDARIES (LOB); INVOLVED IN: organ boundary specification between lateral organs and the meristem; EXPRESSED IN: embryo, anther; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD25 (LOB DOMAIN-CONTAINING PROTEIN 25) (TAIR:AT3G27650.1); Has 571 Blast hits to 568 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 571; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G63090.2p  transcript_id AT5G63090.2  protein_id AT5G63090.2p  transcript_id AT5G63090.2  
At5g63090	chr5:025308723	0.0	C/25308723-25309283	AT5G63090.3  CDS  gene_syn LATERAL ORGAN BOUNDARIES, LOB, MDC12.5, MDC12_5  gene LOB  function Involved in lateral organ development  go_process organ boundary specification between lateral organs and the meristem|GO:0010199|12068116|IMP  product LOB (LATERAL ORGAN BOUNDARIES)  note LATERAL ORGAN BOUNDARIES (LOB); INVOLVED IN: organ boundary specification between lateral organs and the meristem; EXPRESSED IN: embryo, anther; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD25 (LOB DOMAIN-CONTAINING PROTEIN 25) (TAIR:AT3G27650.1); Has 571 Blast hits to 568 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 571; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G63090.3p  transcript_id AT5G63090.3  protein_id AT5G63090.3p  transcript_id AT5G63090.3  
At5g63090	chr5:025308723	0.0	C/25308723-25309283	AT5G63090.4  CDS  gene_syn LATERAL ORGAN BOUNDARIES, LOB, MDC12.5, MDC12_5  gene LOB  function Involved in lateral organ development  go_process organ boundary specification between lateral organs and the meristem|GO:0010199|12068116|IMP  product LOB (LATERAL ORGAN BOUNDARIES)  note LATERAL ORGAN BOUNDARIES (LOB); INVOLVED IN: organ boundary specification between lateral organs and the meristem; EXPRESSED IN: embryo, anther; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD25 (LOB DOMAIN-CONTAINING PROTEIN 25) (TAIR:AT3G27650.1); Has 571 Blast hits to 568 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 571; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G63090.4p  transcript_id AT5G63090.4  protein_id AT5G63090.4p  transcript_id AT5G63090.4  
At5g63100	chr5:025314434	0.0	C/25314434-25315423	AT5G63100.1  CDS  gene_syn MDC12.6, MDC12_6  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44600.1); Has 92 Blast hits to 92 proteins in 36 species: Archae - 0; Bacteria - 42; Metazoa - 1; Fungi - 2; Plants - 43; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G63100.1p  transcript_id AT5G63100.1  protein_id AT5G63100.1p  transcript_id AT5G63100.1  
At5g63110	chr5:025317688	0.0	C/25317688-25318227,25316830-25317270,25316593-25316735,25316244-25316334,25316016-25316146,25315834-25315903	AT5G63110.1  CDS  gene_syn ATHDA6, AXE1, HDA6, HISTONE DEACETYLASE 6, MDC12.7, MDC12_7, RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, RPD3B, RTS1, SIL1  gene HDA6  function RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing.  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component nucleus|GO:0005634|16648464|IDA  go_component nucleus|GO:0005634||ISS  go_process posttranscriptional gene silencing|GO:0016441|12486004|IMP  go_process gene silencing|GO:0016458|9611181|IMP  go_process histone deacetylation|GO:0016575|16648464|IMP  go_process histone deacetylation|GO:0016575||ISS  go_function histone deacetylase activity|GO:0004407|11340181|ISS  go_function histone deacetylase activity|GO:0004407|12466527|ISS  go_function histone deacetylase activity|GO:0004407||ISS  product HDA6 (HISTONE DEACETYLASE 6); histone deacetylase  note HISTONE DEACETYLASE 6 (HDA6); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: gene silencing, posttranscriptional gene silencing, histone deacetylation; LOCATED IN: nucleus, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: HD1 (HISTONE DEACETYLASE 1); basal transcription repressor/ histone deacetylase/ protein binding (TAIR:AT4G38130.2); Has 6650 Blast hits to 6525 proteins in 846 species: Archae - 124; Bacteria - 1999; Metazoa - 1159; Fungi - 358; Plants - 283; Viruses - 0; Other Eukaryotes - 2727 (source: NCBI BLink).  protein_id AT5G63110.1p  transcript_id AT5G63110.1  protein_id AT5G63110.1p  transcript_id AT5G63110.1  
At5g63120	chr5:025322016	0.0	C/25322016-25322071,25321473-25321936,25321207-25321386,25320954-25321115,25320715-25320869,25320454-25320546,25320264-25320349,25319937-25320163,25319181-25319414,25318967-25319085	AT5G63120.2  CDS  gene_syn MDC12.8, MDC12_8  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function ATP-dependent helicase activity|GO:0008026||ISS  product ethylene-responsive DEAD box RNA helicase, putative (RH30)  note ethylene-responsive DEAD box RNA helicase, putative (RH30); FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase, putative (RH20) (TAIR:AT1G55150.1); Has 39371 Blast hits to 35899 proteins in 1982 species: Archae - 538; Bacteria - 14121; Metazoa - 10056; Fungi - 3867; Plants - 3106; Viruses - 71; Other Eukaryotes - 7612 (source: NCBI BLink).  protein_id AT5G63120.2p  transcript_id AT5G63120.2  protein_id AT5G63120.2p  transcript_id AT5G63120.2  
At5g63120	chr5:025322016	0.0	C/25322016-25322071,25321473-25321936,25321207-25321386,25320954-25321115,25320715-25320869,25320454-25320546,25320264-25320349,25319937-25320163,25319798-25319829	AT5G63120.1  CDS  gene_syn MDC12.8, MDC12_8  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function ATP-dependent helicase activity|GO:0008026||ISS  product ethylene-responsive DEAD box RNA helicase, putative (RH30)  note ethylene-responsive DEAD box RNA helicase, putative (RH30); FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase, putative (RH20) (TAIR:AT1G55150.1); Has 33065 Blast hits to 29980 proteins in 1907 species: Archae - 296; Bacteria - 10970; Metazoa - 9510; Fungi - 3399; Plants - 2924; Viruses - 62; Other Eukaryotes - 5904 (source: NCBI BLink).  protein_id AT5G63120.1p  transcript_id AT5G63120.1  protein_id AT5G63120.1p  transcript_id AT5G63120.1  
At5g63130	chr5:025323190	0.0	W/25323190-25323349,25323439-25323857	AT5G63130.1  CDS  gene_syn MDC12.9, MDC12_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product octicosapeptide/Phox/Bem1p (PB1) domain-containing protein  note octicosapeptide/Phox/Bem1p (PB1) domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (TAIR:AT3G48240.1); Has 171 Blast hits to 171 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G63130.1p  transcript_id AT5G63130.1  protein_id AT5G63130.1p  transcript_id AT5G63130.1  
At5g63135	chr5:025326297	0.0	C/25326297-25326440,25325253-25325408	AT5G63135.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 33 Blast hits to 33 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G63135.1p  transcript_id AT5G63135.1  protein_id AT5G63135.1p  transcript_id AT5G63135.1  
At5g63140	chr5:025328237	0.0	W/25328237-25328537,25328667-25329064,25329146-25329616	AT5G63140.1  CDS  gene_syn ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 29, ATPAP29, MDC12.10, MDC12_10, PAP29  gene ATPAP29  go_component endomembrane system|GO:0012505||IEA  go_function acid phosphatase activity|GO:0003993|16244908|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product ATPAP29 (ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 29); acid phosphatase/ protein serine/threonine phosphatase  note ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 29 (ATPAP29); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Phosphoesterase At2g46880 (InterPro:IPR011230); BEST Arabidopsis thaliana protein match is: PAP14 (PURPLE ACID PHOSPHATASE 14); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT2G46880.1); Has 317 Blast hits to 316 proteins in 98 species: Archae - 0; Bacteria - 100; Metazoa - 0; Fungi - 132; Plants - 63; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT5G63140.1p  transcript_id AT5G63140.1  protein_id AT5G63140.1p  transcript_id AT5G63140.1  
At5g63145	chr5:025330036	0.0	W/25330036-25330107	AT5G63145.1  tRNA  gene_syn 67910.TRNA-THR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Thr (anticodon: TGT)  transcript_id AT5G63145.1  
At5g63150	chr5:025330244	0.0	W/25330244-25330660	AT5G63150.1  CDS  gene_syn MDC12.12, MDC12_12  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1713, mitochondria (InterPro:IPR013177); Has 15 Blast hits to 15 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G63150.1p  transcript_id AT5G63150.1  protein_id AT5G63150.1p  transcript_id AT5G63150.1  
At5g63160	chr5:025335268	0.0	C/25335268-25335399,25335034-25335173,25334384-25334687,25333948-25334282,25333485-25333671	AT5G63160.1  CDS  gene_syn BT1, BTB AND TAZ DOMAIN PROTEIN 1, MDC12.13, MDC12_13  gene BT1  function BTB and TAZ domain protein. Short-lived nuclear-cytoplasmic protein targeted for degradation by the 26S proteosome pathway. Acts redundantly with BT2 and BT3 during female gametophyte development.  go_component nucleus|GO:0005634|19054356|IDA  go_component cytoplasm|GO:0005737|19054356|IDA  go_process embryo sac development|GO:0009553|19054356|IGI  go_process pollen development|GO:0009555|19054356|IGI  go_process response to auxin stimulus|GO:0009733|19054356|IEP  go_function protein binding|GO:0005515||ISS  go_function transcription regulator activity|GO:0030528|10748221|TAS  product BT1 (BTB AND TAZ DOMAIN PROTEIN 1); protein binding / transcription regulator  note BTB AND TAZ DOMAIN PROTEIN 1 (BT1); FUNCTIONS IN: protein binding, transcription regulator activity; INVOLVED IN: response to auxin stimulus, embryo sac development, pollen development; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: stem, rosette leaf; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), Zinc finger, TAZ-type (InterPro:IPR000197), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BT2 (BTB AND TAZ DOMAIN PROTEIN 2); protein binding / transcription factor/ transcription regulator (TAIR:AT3G48360.1); Has 1130 Blast hits to 1130 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 767; Fungi - 0; Plants - 323; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT5G63160.1p  transcript_id AT5G63160.1  protein_id AT5G63160.1p  transcript_id AT5G63160.1  
At5g63168	chr5:025338058	0.0	C/25338058-25338195	AT5G63168.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G63168.1p  transcript_id AT5G63168.1  protein_id AT5G63168.1p  transcript_id AT5G63168.1  
At5g63170	chr5:025339859	0.0	C/25339859-25340096,25339626-25339756,25339290-25339526,25338955-25339201,25338699-25338862	AT5G63170.1  CDS  gene_syn MDC12.14, MDC12_14  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function lipase activity|GO:0016298||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298||ISS  product GDSL-motif lipase, putative  note GDSL-motif lipase, putative; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT1G73610.1); Has 1755 Blast hits to 1737 proteins in 147 species: Archae - 0; Bacteria - 183; Metazoa - 1; Fungi - 11; Plants - 1543; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT5G63170.1p  transcript_id AT5G63170.1  protein_id AT5G63170.1p  transcript_id AT5G63170.1  
At5g63180	chr5:025342929	0.0	C/25342929-25343113,25341954-25342700,25341452-25341590,25341106-25341333	AT5G63180.1  CDS  gene_syn MDC12.15, MDC12_15  go_process biological_process|GO:0008150||ND  go_function lyase activity|GO:0016829||ISS  go_function pectate lyase activity|GO:0030570||ISS  product pectate lyase family protein  note pectate lyase family protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: pectate lyase family protein (TAIR:AT4G24780.1); Has 922 Blast hits to 919 proteins in 165 species: Archae - 0; Bacteria - 401; Metazoa - 0; Fungi - 114; Plants - 397; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G63180.1p  transcript_id AT5G63180.1  protein_id AT5G63180.1p  transcript_id AT5G63180.1  
At5g63190	chr5:025346145	0.0	W/25346145-25346361,25346543-25346640,25346770-25348563	AT5G63190.1  CDS  gene_syn MDC12.16, MDC12_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MA3 domain-containing protein  note MA3 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891); BEST Arabidopsis thaliana protein match is: MA3 domain-containing protein (TAIR:AT4G24800.2); Has 1496 Blast hits to 591 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 1077; Fungi - 6; Plants - 322; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).  protein_id AT5G63190.1p  transcript_id AT5G63190.1  protein_id AT5G63190.1p  transcript_id AT5G63190.1  
At5g63190	chr5:025346145	0.0	W/25346145-25346361,25346543-25346640,25346770-25348563	AT5G63190.2  CDS  gene_syn MDC12.16, MDC12_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MA3 domain-containing protein  note MA3 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891); BEST Arabidopsis thaliana protein match is: MA3 domain-containing protein (TAIR:AT4G24800.2); Has 1496 Blast hits to 591 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 1077; Fungi - 6; Plants - 322; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).  protein_id AT5G63190.2p  transcript_id AT5G63190.2  protein_id AT5G63190.2p  transcript_id AT5G63190.2  
At5g63195	chr5:025346729	0.0	C/25346729-25348386	AT5G63195.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT5G63190  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G63195.1  
At5g63200	chr5:025349043	0.0	W/25349043-25349206,25349530-25349746,25349964-25350056,25350136-25350237,25350356-25350523,25350600-25350688,25350760-25350881,25351029-25351210,25351736-25352020,25352246-25352393,25352520-25352899	AT5G63200.1  CDS  gene_syn AT5G63210, MDC12.17, MDC12_17  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product tetratricopeptide repeat (TPR)-containing protein  note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: SEC (secret agent); transferase, transferring glycosyl groups (TAIR:AT3G04240.1); Has 14546 Blast hits to 7662 proteins in 724 species: Archae - 553; Bacteria - 5441; Metazoa - 2275; Fungi - 367; Plants - 302; Viruses - 0; Other Eukaryotes - 5608 (source: NCBI BLink).  protein_id AT5G63200.1p  transcript_id AT5G63200.1  protein_id AT5G63200.1p  transcript_id AT5G63200.1  
At5g63220	chr5:025355366	0.0	C/25355366-25355410,25355182-25355261,25354927-25355005,25354757-25354838,25354526-25354685,25354326-25354416,25354166-25354249,25353952-25353998,25353737-25353865,25353567-25353651,25353340-25353420,25353256-25353267	AT5G63220.1  CDS  gene_syn MDC12.19, MDC12_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0363 (InterPro:IPR007317); Has 205 Blast hits to 205 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 97; Fungi - 67; Plants - 17; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT5G63220.1p  transcript_id AT5G63220.1  protein_id AT5G63220.1p  transcript_id AT5G63220.1  
At5g63225	chr5:025356351	0.0	C/25356351-25356683	AT5G63225.1  CDS  function glycosyl hydrolase family protein 17  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G63230.1); Has 764 Blast hits to 728 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 763; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G63225.1p  transcript_id AT5G63225.1  protein_id AT5G63225.1p  transcript_id AT5G63225.1  
At5g63230	chr5:025357473	0.0	C/25357473-25357808	AT5G63230.1  CDS  gene_syn MDC12.20, MDC12_20  function glycosyl hydrolase family protein 17  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G63225.1); Has 756 Blast hits to 720 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 756; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G63230.1p  transcript_id AT5G63230.1  protein_id AT5G63230.1p  transcript_id AT5G63230.1  
At5g63240	chr5:025359050	0.0	C/25359050-25359439	AT5G63240.1  CDS  gene_syn MDC12.21, MDC12_21  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycosyl hydrolase family protein 17  note glycosyl hydrolase family protein 17; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family protein 17 (TAIR:AT5G63250.1); Has 752 Blast hits to 716 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 743; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G63240.1p  transcript_id AT5G63240.1  protein_id AT5G63240.1p  transcript_id AT5G63240.1  
At5g63250	chr5:025360263	0.0	C/25360263-25360661	AT5G63250.1  CDS  gene_syn MDC12.22, MDC12_22  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycosyl hydrolase family protein 17  note glycosyl hydrolase family protein 17; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family protein 17 (TAIR:AT5G63240.1); Has 762 Blast hits to 726 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 9; Plants - 752; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G63250.1p  transcript_id AT5G63250.1  protein_id AT5G63250.1p  transcript_id AT5G63250.1  
At5g63260	chr5:025361900	0.0	W/25361900-25362298,25362726-25362791,25363257-25363376,25363463-25363747,25363832-25364104,25364289-25364453	AT5G63260.1  CDS  gene_syn MDC12.23, MDC12_23  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc finger (CCCH-type) family protein  note zinc finger (CCCH-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein (TAIR:AT3G48440.1); Has 1442 Blast hits to 933 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 482; Fungi - 232; Plants - 570; Viruses - 0; Other Eukaryotes - 158 (source: NCBI BLink).  protein_id AT5G63260.1p  transcript_id AT5G63260.1  protein_id AT5G63260.1p  transcript_id AT5G63260.1  
At5g63270	chr5:025365944	0.0	C/25365944-25365949,25365610-25365822,25365498-25365521	AT5G63270.1  CDS  gene_syn MDC12.24, MDC12_24  go_component cellular_component|GO:0005575||ND  go_process response to nitrate|GO:0010167||ISS  go_function molecular_function|GO:0003674||ND  product nitrate-responsive NOI protein, putative  note nitrate-responsive NOI protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to nitrate; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Defence response, Rin4 (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: nitrate-responsive NOI protein, putative (TAIR:AT3G48450.1); Has 140 Blast hits to 139 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G63270.1p  transcript_id AT5G63270.1  protein_id AT5G63270.1p  transcript_id AT5G63270.1  
At5g63280	chr5:025367085	0.0	W/25367085-25367159,25367284-25367309,25367451-25367541,25367659-25367868,25367941-25368063,25368172-25368229,25368349-25368422,25368599-25368687,25368779-25368848	AT5G63280.1  CDS  gene_syn MDC12.25, MDC12_25  go_component intracellular|GO:0005622||IEA  go_component endomembrane system|GO:0012505||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT5G40710.1); Has 77 Blast hits to 75 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 44; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G63280.1p  transcript_id AT5G63280.1  protein_id AT5G63280.1p  transcript_id AT5G63280.1  
At5g63290	chr5:025370071	0.0	C/25370071-25370894,25369349-25369979	AT5G63290.1  CDS  gene_syn MDC12.26, MDC12_26  go_component cytoplasm|GO:0005737||IEA  go_component chloroplast|GO:0009507||IEA  go_process porphyrin biosynthetic process|GO:0006779||IEA  go_function catalytic activity|GO:0003824||IEA  go_function coproporphyrinogen oxidase activity|GO:0004109||IEA  go_function iron-sulfur cluster binding|GO:0051536||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product coproporphyrinogen oxidase-related  note coproporphyrinogen oxidase-related; FUNCTIONS IN: oxidoreductase activity, iron-sulfur cluster binding, coproporphyrinogen oxidase activity, catalytic activity; INVOLVED IN: porphyrin biosynthetic process; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Putative oxygen-independent coproporphyrinogen III oxidase (InterPro:IPR004559), HemN, C-terminal (InterPro:IPR010723), Radical SAM (InterPro:IPR007197); Has 6061 Blast hits to 6061 proteins in 1312 species: Archae - 76; Bacteria - 4403; Metazoa - 64; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 1499 (source: NCBI BLink).  protein_id AT5G63290.1p  transcript_id AT5G63290.1  protein_id AT5G63290.1p  transcript_id AT5G63290.1  
At5g63300	chr5:025371122	0.0	W/25371122-25371537,25371618-25371759	AT5G63300.1  CDS  gene_syn MDC12.27, MDC12_27  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_component chloroplast|GO:0009507||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product structural constituent of ribosome  note structural constituent of ribosome; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular, chloroplast; CONTAINS InterPro DOMAIN/s: Ribosomal protein S21 (InterPro:IPR001911); BEST Arabidopsis thaliana protein match is: GHS1 (GLUCOSE HYPERSENSITIVE 1); structural constituent of ribosome (TAIR:AT3G27160.1); Has 870 Blast hits to 870 proteins in 343 species: Archae - 0; Bacteria - 687; Metazoa - 17; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).  protein_id AT5G63300.1p  transcript_id AT5G63300.1  protein_id AT5G63300.1p  transcript_id AT5G63300.1  
At5g63300	chr5:025371122	0.0	W/25371122-25371775	AT5G63300.2  CDS  gene_syn MDC12.27, MDC12_27  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_component chloroplast|GO:0009507||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product structural constituent of ribosome  note structural constituent of ribosome; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular, chloroplast; CONTAINS InterPro DOMAIN/s: Ribosomal protein S21 (InterPro:IPR001911); BEST Arabidopsis thaliana protein match is: GHS1 (GLUCOSE HYPERSENSITIVE 1); structural constituent of ribosome (TAIR:AT3G27160.1); Has 864 Blast hits to 864 proteins in 335 species: Archae - 0; Bacteria - 689; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).  protein_id AT5G63300.2p  transcript_id AT5G63300.2  protein_id AT5G63300.2p  transcript_id AT5G63300.2  
At5g63310	chr5:025373599	0.0	C/25373599-25373838,25373362-25373418,25373130-25373216,25372829-25372909,25372622-25372734,25372483-25372532,25372122-25372189	AT5G63310.1  CDS  gene_syn MDC12.28, MDC12_28, NDP KINASE 1A, NDPK IA, NDPK IA IA, NDPK1A, NDPK2, NUCLEOSIDE DIPHOSPHATE KINASE 2, NUCLEOSIDE DIPHOSPHATE KINASE IA  gene NDPK2  function Maintains intracellular dNTP levels except ATP. Plays a role in response to oxidative stress and UV. Involved in phytochrome-mediated light signaling. Participates in auxin-regulated processes, partly through the modulation of auxin transport. H-bonding with His-197 inside the nucleotide-binding pocket is critical for NDPK2 functioning.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component nucleus|GO:0005634|10358052|IDA  go_component cytoplasm|GO:0005737|10358052|IDA  go_process response to UV|GO:0009411|15561724|TAS  go_process red, far-red light phototransduction|GO:0009585|10524631|IMP  go_process auxin mediated signaling pathway|GO:0009734|15927941|IMP  go_process response to hydrogen peroxide|GO:0042542|12506203|IEP  go_process response to hydrogen peroxide|GO:0042542|12506203|IMP  go_function nucleoside diphosphate kinase activity|GO:0004550|12506203|TAS  go_function nucleoside diphosphate kinase activity|GO:0004550|15465053|IDA  go_function nucleoside diphosphate kinase activity|GO:0004550||ISS  go_function protein binding|GO:0005515|10524631|IPI  go_function ATP binding|GO:0005524||ISS  product NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2); ATP binding / nucleoside diphosphate kinase/ protein binding  note NUCLEOSIDE DIPHOSPHATE KINASE 2 (NDPK2); FUNCTIONS IN: nucleoside diphosphate kinase activity, protein binding, ATP binding; INVOLVED IN: response to UV, auxin mediated signaling pathway, response to hydrogen peroxide, red, far-red light phototransduction; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside diphosphate kinase, core (InterPro:IPR001564); BEST Arabidopsis thaliana protein match is: NDPK1; ATP binding / nucleoside diphosphate kinase (TAIR:AT4G09320.1); Has 6423 Blast hits to 6289 proteins in 1549 species: Archae - 205; Bacteria - 2599; Metazoa - 905; Fungi - 116; Plants - 248; Viruses - 17; Other Eukaryotes - 2333 (source: NCBI BLink).  protein_id AT5G63310.1p  transcript_id AT5G63310.1  protein_id AT5G63310.1p  transcript_id AT5G63310.1  
At5g63320	chr5:025377599	0.0	C/25377599-25378783,25377459-25377507,25377180-25377379	AT5G63320.2  CDS  gene_syn K9H21.12, K9H21_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: ATBET9 (Arabidopsis thaliana Bromodomain and Extraterminal Domain protein 9); DNA binding (TAIR:AT5G14270.1).  protein_id AT5G63320.2p  transcript_id AT5G63320.2  protein_id AT5G63320.2p  transcript_id AT5G63320.2  
At5g63320	chr5:025377599	0.0	C/25377599-25378783,25377459-25377507,25377180-25377379	AT5G63320.3  CDS  gene_syn K9H21.12, K9H21_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: ATBET9 (Arabidopsis thaliana Bromodomain and Extraterminal Domain protein 9); DNA binding (TAIR:AT5G14270.1).  protein_id AT5G63320.3p  transcript_id AT5G63320.3  protein_id AT5G63320.3p  transcript_id AT5G63320.3  
At5g63320	chr5:025377599	0.0	C/25377599-25378783,25377459-25377507,25377221-25377379,25376752-25376822,25376513-25376585,25376345-25376428,25376131-25376255,25375967-25376033,25375744-25375874,25374413-25375654	AT5G63320.1  CDS  gene_syn K9H21.12, K9H21_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: ATBET9 (Arabidopsis thaliana Bromodomain and Extraterminal Domain protein 9); DNA binding (TAIR:AT5G14270.1); Has 44558 Blast hits to 24285 proteins in 1236 species: Archae - 185; Bacteria - 3450; Metazoa - 19774; Fungi - 4003; Plants - 1404; Viruses - 349; Other Eukaryotes - 15393 (source: NCBI BLink).  protein_id AT5G63320.1p  transcript_id AT5G63320.1  protein_id AT5G63320.1p  transcript_id AT5G63320.1  
At5g63340	chr5:025378894	0.0	W/25378894-25379052,25379109-25379212,25379364-25379554,25379610-25379674	AT5G63340.1  CDS  gene_syn K9H21.7, K9H21_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G63340.1p  transcript_id AT5G63340.1  protein_id AT5G63340.1p  transcript_id AT5G63340.1  
At5g63350	chr5:025380216	0.0	C/25380216-25381124	AT5G63350.1  CDS  gene_syn K9H21.8, K9H21_8  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48510.1); Has 39 Blast hits to 39 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G63350.1p  transcript_id AT5G63350.1  protein_id AT5G63350.1p  transcript_id AT5G63350.1  
At5g63370	chr5:025384954	0.0	C/25384954-25386390	AT5G63370.2  CDS  gene_syn K9H21.10, K9H21_10  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G67580.2); Has 91381 Blast hits to 89916 proteins in 2849 species: Archae - 52; Bacteria - 8071; Metazoa - 39736; Fungi - 8667; Plants - 16757; Viruses - 438; Other Eukaryotes - 17660 (source: NCBI BLink).  protein_id AT5G63370.2p  transcript_id AT5G63370.2  protein_id AT5G63370.2p  transcript_id AT5G63370.2  
At5g63370	chr5:025384954	0.0	C/25384954-25386390	AT5G63370.3  CDS  gene_syn K9H21.10, K9H21_10  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G67580.2); Has 91381 Blast hits to 89916 proteins in 2849 species: Archae - 52; Bacteria - 8071; Metazoa - 39736; Fungi - 8667; Plants - 16757; Viruses - 438; Other Eukaryotes - 17660 (source: NCBI BLink).  protein_id AT5G63370.3p  transcript_id AT5G63370.3  protein_id AT5G63370.3p  transcript_id AT5G63370.3  
At5g63370	chr5:025384954	0.0	C/25384954-25386792	AT5G63370.1  CDS  gene_syn K9H21.10, K9H21_10  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G67580.2); Has 90774 Blast hits to 89322 proteins in 2847 species: Archae - 52; Bacteria - 8004; Metazoa - 39518; Fungi - 8567; Plants - 16625; Viruses - 438; Other Eukaryotes - 17570 (source: NCBI BLink).  protein_id AT5G63370.1p  transcript_id AT5G63370.1  protein_id AT5G63370.1p  transcript_id AT5G63370.1  
At5g63380	chr5:025388971	0.0	C/25388971-25390026,25388642-25388831,25388130-25388275,25387989-25388056,25387813-25387915,25387581-25387706	AT5G63380.1  CDS  gene_syn K9H21.11, K9H21_11  function Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At5g63380 preferentially activates fatty acids with increased chain length (C9:0 to C8:0) and thus shares characteristics with long-chain fatty acyl-CoA synthases. Also able to catalyze the conversion of OPDA to its CoA ester and is therefore thought to be involved in the peroxisomal & 946;-oxidation steps of jasmonic acid biosynthesis.  go_component peroxisome|GO:0005777|15677481|IDA  go_process jasmonic acid biosynthetic process|GO:0009695|15677481|IDA  go_process auxin metabolic process|GO:0009850|15677481|IDA  go_process auxin biosynthetic process|GO:0009851|15677481|IDA  go_function fatty-acyl-CoA synthase activity|GO:0004321|15677481|IDA  go_function 4-coumarate-CoA ligase activity|GO:0016207||ISS  product 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein  note 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein; FUNCTIONS IN: 4-coumarate-CoA ligase activity, fatty-acyl-CoA synthase activity; INVOLVED IN: jasmonic acid biosynthetic process, auxin biosynthetic process, auxin metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: OPCL1 (OPC-8:0 COA LIGASE1); 4-coumarate-CoA ligase (TAIR:AT1G20510.1); Has 53352 Blast hits to 49367 proteins in 2249 species: Archae - 608; Bacteria - 29446; Metazoa - 2947; Fungi - 3030; Plants - 1313; Viruses - 1; Other Eukaryotes - 16007 (source: NCBI BLink).  protein_id AT5G63380.1p  transcript_id AT5G63380.1  protein_id AT5G63380.1p  transcript_id AT5G63380.1  
At5g63390	chr5:025391957	0.0	C/25391957-25392591,25391706-25391874,25391535-25391624,25391184-25391467,25390822-25391080,25390512-25390754	AT5G63390.1  CDS  gene_syn MLE2.2, MLE2_2  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G44500.1); Has 435 Blast hits to 426 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 435; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G63390.1p  transcript_id AT5G63390.1  protein_id AT5G63390.1p  transcript_id AT5G63390.1  
At5g63400	chr5:025394700	0.0	C/25394700-25394817,25394133-25394278,25393918-25394037,25393645-25393812,25393464-25393553,25393274-25393372	AT5G63400.1  CDS  gene_syn ADENYLATE KINASE 1, ADK1, MLE2.3, MLE2_3  gene ADK1  function encodes a protein similar to adenylate kinase.  go_component mitochondrion|GO:0005739|15276431|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function adenylate kinase activity|GO:0004017||IEA  go_function ATP binding|GO:0005524||IEA  go_function phosphotransferase activity, phosphate group as acceptor|GO:0016776||IEA  go_function nucleotide kinase activity|GO:0019201||IEA  go_function nucleobase, nucleoside, nucleotide kinase activity|GO:0019205||IEA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_function adenylate kinase activity|GO:0004017||ISS  product ADK1 (ADENYLATE KINASE 1); ATP binding / adenylate kinase/ nucleobase, nucleoside, nucleotide kinase/ nucleotide kinase/ phosphotransferase, phosphate group as acceptor  note ADENYLATE KINASE 1 (ADK1); FUNCTIONS IN: nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, phosphotransferase activity, phosphate group as acceptor, ATP binding, adenylate kinase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, plasma membrane, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adenylate kinase, zinc-finger lid region (InterPro:IPR007862), Adenylate kinase, subfamily (InterPro:IPR006259), Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: adenylate kinase, putative (TAIR:AT5G50370.1); Has 8883 Blast hits to 8754 proteins in 1853 species: Archae - 61; Bacteria - 4513; Metazoa - 1062; Fungi - 291; Plants - 249; Viruses - 0; Other Eukaryotes - 2707 (source: NCBI BLink).  protein_id AT5G63400.1p  transcript_id AT5G63400.1  protein_id AT5G63400.1p  transcript_id AT5G63400.1  
At5g63400	chr5:025394700	0.0	C/25394700-25394817,25394133-25394278,25393918-25394037,25393645-25393812,25393502-25393522	AT5G63400.2  CDS  gene_syn ADENYLATE KINASE 1, ADK1, MLE2.3, MLE2_3  gene ADK1  function encodes a protein similar to adenylate kinase.  go_component plasma membrane|GO:0005886|17151019|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function adenylate kinase activity|GO:0004017||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleobase, nucleoside, nucleotide kinase activity|GO:0019205||IEA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_function adenylate kinase activity|GO:0004017||ISS  product ADK1 (ADENYLATE KINASE 1); ATP binding / adenylate kinase/ nucleobase, nucleoside, nucleotide kinase  note ADENYLATE KINASE 1 (ADK1); FUNCTIONS IN: nucleobase, nucleoside, nucleotide kinase activity, adenylate kinase activity, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, plasma membrane, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adenylate kinase, zinc-finger lid region (InterPro:IPR007862), Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: adenylate kinase, putative (TAIR:AT5G50370.1); Has 8608 Blast hits to 8489 proteins in 1850 species: Archae - 61; Bacteria - 4491; Metazoa - 1037; Fungi - 285; Plants - 243; Viruses - 0; Other Eukaryotes - 2491 (source: NCBI BLink).  protein_id AT5G63400.2p  transcript_id AT5G63400.2  protein_id AT5G63400.2p  transcript_id AT5G63400.2  
At5g63410	chr5:025396658	0.0	C/25396658-25397768,25396429-25396565,25396096-25396339,25395783-25395994,25395463-25395591,25395173-25395382	AT5G63410.1  CDS  gene_syn MLE2.4, MLE2_4  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT5G14210.1); Has 51460 Blast hits to 26258 proteins in 890 species: Archae - 4; Bacteria - 881; Metazoa - 7342; Fungi - 648; Plants - 39191; Viruses - 92; Other Eukaryotes - 3302 (source: NCBI BLink).  protein_id AT5G63410.1p  transcript_id AT5G63410.1  protein_id AT5G63410.1p  transcript_id AT5G63410.1  
At5g63420	chr5:025400515	0.0	W/25400515-25400716,25401065-25401296,25401402-25401525,25401710-25401766,25401995-25402186,25402265-25402342,25402466-25402648,25402851-25402931,25403137-25403202,25403298-25403390,25403489-25403614,25403818-25403931,25404264-25404359,25404445-25404542,25404636-25405060,25405129-25405604,25405715-25405807	AT5G63420.1  CDS  gene_syn MLE2.5, MLE2_5, emb2746, embryo defective 2746  gene emb2746  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_function DNA binding|GO:0003677||IEA  go_function hydrolase activity|GO:0016787||IEA  go_process metabolic process|GO:0008152||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function catalytic activity|GO:0003824||ISS  product emb2746 (embryo defective 2746); DNA binding / catalytic/ hydrolase  note embryo defective 2746 (emb2746); FUNCTIONS IN: hydrolase activity, DNA binding, catalytic activity; INVOLVED IN: embryonic development ending in seed dormancy, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), RNA-metabolising metallo-beta-lactamase (InterPro:IPR011108), Beta-lactamase-like (InterPro:IPR001279), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: DNA-binding protein-related (TAIR:AT2G38250.1); Has 5467 Blast hits to 5398 proteins in 932 species: Archae - 259; Bacteria - 2061; Metazoa - 290; Fungi - 126; Plants - 222; Viruses - 2; Other Eukaryotes - 2507 (source: NCBI BLink).  protein_id AT5G63420.1p  transcript_id AT5G63420.1  protein_id AT5G63420.1p  transcript_id AT5G63420.1  
At5g63440	chr5:025406360	0.0	W/25406360-25406474,25407021-25407135,25407228-25407381,25407458-25407554,25407650-25407738,25407867-25407935,25408136-25408195	AT5G63440.2  CDS  gene_syn MLE2.7, MLE2_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF167 (InterPro:IPR003746); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G49170.1); Has 564 Blast hits to 564 proteins in 221 species: Archae - 12; Bacteria - 262; Metazoa - 198; Fungi - 8; Plants - 41; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT5G63440.2p  transcript_id AT5G63440.2  protein_id AT5G63440.2p  transcript_id AT5G63440.2  
At5g63440	chr5:025406360	0.0	W/25406360-25406474,25407021-25407135,25407228-25407381,25407458-25407554,25407650-25407786	AT5G63440.1  CDS  gene_syn MLE2.7, MLE2_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF167 (InterPro:IPR003746); Has 216 Blast hits to 216 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 148; Fungi - 8; Plants - 33; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT5G63440.1p  transcript_id AT5G63440.1  protein_id AT5G63440.1p  transcript_id AT5G63440.1  
At5g63440	chr5:025406409	0.0	W/25406409-25406474,25407029-25407135,25407228-25407381,25407458-25407554,25407650-25407738,25407867-25407935,25408136-25408195	AT5G63440.3  CDS  gene_syn MLE2.7, MLE2_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF167 (InterPro:IPR003746); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G49170.1); Has 497 Blast hits to 497 proteins in 208 species: Archae - 12; Bacteria - 262; Metazoa - 160; Fungi - 2; Plants - 41; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT5G63440.3p  transcript_id AT5G63440.3  protein_id AT5G63440.3p  transcript_id AT5G63440.3  
At5g63450	chr5:025408987	0.0	C/25408987-25410519	AT5G63450.1  CDS  gene_syn CYP94B1, MLE2.8, MLE2_8  gene CYP94B1  function member of CYP94B  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP94B1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP94B1; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP94B3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G48520.1); Has 18731 Blast hits to 18682 proteins in 1021 species: Archae - 19; Bacteria - 1350; Metazoa - 8729; Fungi - 3444; Plants - 4460; Viruses - 3; Other Eukaryotes - 726 (source: NCBI BLink).  protein_id AT5G63450.1p  transcript_id AT5G63450.1  protein_id AT5G63450.1p  transcript_id AT5G63450.1  
At5g63460	chr5:025415286	0.0	C/25415286-25415399,25414574-25414619,25414203-25414326,25414013-25414077,25413820-25413920,25413605-25413640	AT5G63460.2  CDS  gene_syn MLE2.9, MLE2_9  go_component chloroplast|GO:0009507||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component nucleus|GO:0005634||ISS  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product SAP domain-containing protein  note SAP domain-containing protein; FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034), Ubiquitin ligase, Det1/DDB1-complexing (InterPro:IPR018276); Has 59 Blast hits to 59 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT5G63460.2p  transcript_id AT5G63460.2  protein_id AT5G63460.2p  transcript_id AT5G63460.2  
At5g63460	chr5:025415286	0.0	C/25415286-25415399,25414574-25414619,25414203-25414326,25414013-25414077,25413820-25413923,25413605-25413640	AT5G63460.1  CDS  gene_syn MLE2.9, MLE2_9  go_component chloroplast|GO:0009507||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component nucleus|GO:0005634||ISS  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product SAP domain-containing protein  note SAP domain-containing protein; FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034), Ubiquitin ligase, Det1/DDB1-complexing (InterPro:IPR018276); Has 67 Blast hits to 67 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT5G63460.1p  transcript_id AT5G63460.1  protein_id AT5G63460.1p  transcript_id AT5G63460.1  
At5g63470	chr5:025416332	0.0	C/25416332-25417084	AT5G63470.2  CDS  gene_syn MLE2.10, MLE2_10, NF-YC4, NUCLEAR FACTOR Y, SUBUNIT C4  gene NF-YC4  go_component nucleus|GO:0005634|10446203|IC  go_process regulation of transcription, DNA-dependent|GO:0006355|10446203|ISS  go_function DNA binding|GO:0003677|10446203|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4); DNA binding / transcription factor  note NUCLEAR FACTOR Y, SUBUNIT C4 (NF-YC4); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: NF-YC1 (NUCLEAR FACTOR Y, SUBUNIT C1); DNA binding / transcription activator/ transcription factor (TAIR:AT3G48590.1); Has 950 Blast hits to 950 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 376; Fungi - 232; Plants - 264; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT5G63470.2p  transcript_id AT5G63470.2  protein_id AT5G63470.2p  transcript_id AT5G63470.2  
At5g63470	chr5:025416336	0.0	C/25416336-25417084,25416037-25416040	AT5G63470.1  CDS  gene_syn MLE2.10, MLE2_10, NF-YC4, NUCLEAR FACTOR Y, SUBUNIT C4  gene NF-YC4  go_component nucleus|GO:0005634|10446203|IC  go_process regulation of transcription, DNA-dependent|GO:0006355|10446203|ISS  go_function DNA binding|GO:0003677|10446203|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4); DNA binding / transcription factor  note NUCLEAR FACTOR Y, SUBUNIT C4 (NF-YC4); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: NF-YC1 (NUCLEAR FACTOR Y, SUBUNIT C1); DNA binding / transcription activator/ transcription factor (TAIR:AT3G48590.1); Has 950 Blast hits to 950 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 376; Fungi - 232; Plants - 264; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT5G63470.1p  transcript_id AT5G63470.1  protein_id AT5G63470.1p  transcript_id AT5G63470.1  
At5g63480	chr5:025417317	0.0	W/25417317-25417694,25417949-25418041,25418375-25418473	AT5G63480.1  CDS  gene_syn MLE2.11, MLE2_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 28 Blast hits to 28 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 6; Fungi - 4; Plants - 12; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G63480.1p  transcript_id AT5G63480.1  protein_id AT5G63480.1p  transcript_id AT5G63480.1  
At5g63490	chr5:025421834	0.0	C/25421834-25421970,25421502-25421673,25421262-25421394,25420993-25421163,25420835-25420913,25420620-25420733,25420220-25420286,25419987-25420092,25419838-25419896,25419620-25419729,25419400-25419515,25419233-25419318,25419045-25419134,25418716-25418907	AT5G63490.1  CDS  gene_syn MLE2.12, MLE2_12  product CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein  note CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (TAIR:AT5G50640.1); Has 5094 Blast hits to 4096 proteins in 849 species: Archae - 605; Bacteria - 3227; Metazoa - 2; Fungi - 80; Plants - 120; Viruses - 0; Other Eukaryotes - 1060 (source: NCBI BLink).  protein_id AT5G63490.1p  transcript_id AT5G63490.1  protein_id AT5G63490.1p  transcript_id AT5G63490.1  
At5g63500	chr5:025423460	0.0	W/25423460-25423669	AT5G63500.1  CDS  gene_syn MLE2.13, MLE2_13  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48660.1); Has 168 Blast hits to 167 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 168; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G63500.1p  transcript_id AT5G63500.1  protein_id AT5G63500.1p  transcript_id AT5G63500.1  
At5g63510	chr5:025424054	0.0	W/25424054-25424435,25425236-25425612	AT5G63510.1  CDS  gene_syn GAMMA CAL1, GAMMA CARBONIC ANHYDRASE LIKE 1, MLE2.14, MLE2_14  gene GAMMA CAL1  function Encodes a mitochondrial gamma carbonic anhydrase-like protein. Component of the NADH dehydrogenase complex.  go_component membrane|GO:0016020|17432890|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component mitochondrion|GO:0005739|11743114|IDA  go_component mitochondrion|GO:0005739|12837548|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial membrane|GO:0031966|16407270|IDA  go_component respiratory chain complex I|GO:0045271|16407270|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process photorespiration|GO:0009853|16407270|TAS  go_function carbonate dehydratase activity|GO:0004089|16407270|ISS  product GAMMA CAL1 (GAMMA CARBONIC ANHYDRASE LIKE 1); carbonate dehydratase  note GAMMA CARBONIC ANHYDRASE LIKE 1 (GAMMA CAL1); FUNCTIONS IN: carbonate dehydratase activity; INVOLVED IN: response to salt stress, photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, respiratory chain complex I, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), Bacterial transferase hexapeptide repeat (InterPro:IPR001451); BEST Arabidopsis thaliana protein match is: GAMMA CAL2 (GAMMA CARBONIC ANHYDRASE-LIKE 2); transferase (TAIR:AT3G48680.1); Has 4251 Blast hits to 4232 proteins in 982 species: Archae - 93; Bacteria - 2258; Metazoa - 9; Fungi - 8; Plants - 94; Viruses - 0; Other Eukaryotes - 1789 (source: NCBI BLink).  protein_id AT5G63510.1p  transcript_id AT5G63510.1  protein_id AT5G63510.1p  transcript_id AT5G63510.1  
At5g63520	chr5:025428863	0.0	C/25428863-25429093,25428598-25428702,25428412-25428504,25428201-25428323,25427892-25427996,25427749-25427788,25427349-25427504,25426978-25427165,25426783-25426904,25426300-25426696	AT5G63520.1  CDS  gene_syn MLE2.15, MLE2_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FIST domain, N-terminal (InterPro:IPR013702); Has 96 Blast hits to 96 proteins in 46 species: Archae - 0; Bacteria - 72; Metazoa - 6; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT5G63520.1p  transcript_id AT5G63520.1  protein_id AT5G63520.1p  transcript_id AT5G63520.1  
At5g63530	chr5:025433279	0.0	W/25433279-25433287,25433387-25433672,25434161-25434363,25434759-25434849,25435136-25435614	AT5G63530.1  CDS  gene_syn ATFP3, MLE2.16, MLE2_16  gene ATFP3  function Farnesylated protein that binds metals.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process cellular transition metal ion homeostasis|GO:0046916|10561075|TAS  go_function metal ion binding|GO:0046872||ISS  go_function transition metal ion binding|GO:0046914|10561075|IDA  product ATFP3; metal ion binding / transition metal ion binding  note ATFP3; FUNCTIONS IN: transition metal ion binding, metal ion binding; INVOLVED IN: cellular transition metal ion homeostasis; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: metal ion binding (TAIR:AT5G50740.3); Has 9047 Blast hits to 4591 proteins in 425 species: Archae - 38; Bacteria - 435; Metazoa - 4137; Fungi - 635; Plants - 1457; Viruses - 189; Other Eukaryotes - 2156 (source: NCBI BLink).  protein_id AT5G63530.1p  transcript_id AT5G63530.1  protein_id AT5G63530.1p  transcript_id AT5G63530.1  
At5g63530	chr5:025433423	0.0	W/25433423-25433672,25434161-25434363,25434759-25434849,25435136-25435614	AT5G63530.2  CDS  gene_syn ATFP3, MLE2.16, MLE2_16  gene ATFP3  function Farnesylated protein that binds metals.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process cellular transition metal ion homeostasis|GO:0046916|10561075|TAS  go_function metal ion binding|GO:0046872||ISS  go_function transition metal ion binding|GO:0046914|10561075|IDA  product ATFP3; metal ion binding / transition metal ion binding  note ATFP3; FUNCTIONS IN: transition metal ion binding, metal ion binding; INVOLVED IN: cellular transition metal ion homeostasis; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: metal ion binding (TAIR:AT5G50740.3); Has 3992 Blast hits to 2420 proteins in 296 species: Archae - 2; Bacteria - 195; Metazoa - 1385; Fungi - 224; Plants - 1367; Viruses - 113; Other Eukaryotes - 706 (source: NCBI BLink).  protein_id AT5G63530.2p  transcript_id AT5G63530.2  protein_id AT5G63530.2p  transcript_id AT5G63530.2  
At5g63540	chr5:025443840	0.0	C/25443840-25444373,25443578-25443748,25443296-25443441,25442761-25442915,25441798-25442321,25441599-25441709,25441384-25441515,25441033-25441194	AT5G63540.1  CDS  gene_syn MLE2.17, MLE2_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, sperm cell, inflorescence meristem, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1767 (InterPro:IPR013894); Has 185 Blast hits to 185 proteins in 62 species: Archae - 0; Bacteria - 10; Metazoa - 106; Fungi - 12; Plants - 29; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT5G63540.1p  transcript_id AT5G63540.1  protein_id AT5G63540.1p  transcript_id AT5G63540.1  
At5g63540	chr5:025443840	0.0	C/25443840-25444373,25443578-25443748,25443296-25443441,25443083-25443181,25442761-25442915,25441798-25442321,25441599-25441709,25441384-25441515,25441033-25441194	AT5G63540.2  CDS  gene_syn MLE2.17, MLE2_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, sperm cell, inflorescence meristem, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1767 (InterPro:IPR013894); Has 179 Blast hits to 177 proteins in 59 species: Archae - 0; Bacteria - 4; Metazoa - 104; Fungi - 12; Plants - 31; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT5G63540.2p  transcript_id AT5G63540.2  protein_id AT5G63540.2p  transcript_id AT5G63540.2  
At5g63550	chr5:025444805	0.0	W/25444805-25445191,25445273-25445306,25445814-25445893,25446051-25446110,25446197-25446310,25446393-25446473,25446544-25446612,25446850-25447270,25447398-25447495,25447591-25447621,25447714-25447934	AT5G63550.2  CDS  gene_syn MLE2.18, MLE2_18  product unknown protein  note EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48710.1).  protein_id AT5G63550.2p  transcript_id AT5G63550.2  protein_id AT5G63550.2p  transcript_id AT5G63550.2  
At5g63550	chr5:025444805	0.0	W/25444805-25445191,25445273-25445306,25445814-25445893,25446051-25446110,25446197-25446310,25446393-25446473,25446547-25446612,25446850-25447270,25447398-25447495,25447591-25447621,25447714-25447934	AT5G63550.1  CDS  gene_syn MLE2.18, MLE2_18  product unknown protein  note EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48710.1); Has 115795 Blast hits to 50006 proteins in 1760 species: Archae - 230; Bacteria - 10317; Metazoa - 57515; Fungi - 12631; Plants - 4292; Viruses - 1075; Other Eukaryotes - 29735 (source: NCBI BLink).  protein_id AT5G63550.1p  transcript_id AT5G63550.1  protein_id AT5G63550.1p  transcript_id AT5G63550.1  
At5g63560	chr5:025449517	0.0	W/25449517-25449951,25450389-25451234	AT5G63560.1  CDS  gene_syn MBK5.2, MBK5_2  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, F mature embryo stage, 4 leaf senescence stage, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT3G48720.1); Has 1478 Blast hits to 1467 proteins in 145 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 132; Plants - 1346; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G63560.1p  transcript_id AT5G63560.1  protein_id AT5G63560.1p  transcript_id AT5G63560.1  
At5g63570	chr5:025451957	0.0	W/25451957-25452139,25452293-25453111,25453198-25453620	AT5G63570.1  CDS  gene_syn GLUTAMATE-1-SEMIALDEHYDE-2,1-AMINOMUTASE, GSA-AM, GSA1, MBK5.3, MBK5_3  gene GSA1  function Encodes a protein with homology to glutamate-1-semialdehyde 2,1-aminomutase catalyzing the conversion of glutamate-1-semialdehyde (GSA) into 5-amino levulinate. The expression of this gene was demonstrated to be light-induced.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process porphyrin biosynthetic process|GO:0006779|7908550|TAS  go_process response to light stimulus|GO:0009416|7908550|IEP  go_function glutamate-1-semialdehyde 2,1-aminomutase activity|GO:0042286|7908550|IGI  product GSA1 (GLUTAMATE-1-SEMIALDEHYDE-2,1-AMINOMUTASE); glutamate-1-semialdehyde 2,1-aminomutase  note GLUTAMATE-1-SEMIALDEHYDE-2,1-AMINOMUTASE (GSA1); FUNCTIONS IN: glutamate-1-semialdehyde 2,1-aminomutase activity; INVOLVED IN: response to light stimulus, porphyrin biosynthetic process; LOCATED IN: apoplast, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase class-III (InterPro:IPR005814), Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase (InterPro:IPR004639), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: GSA2 (glutamate-1-semialdehyde 2,1-aminomutase 2); catalytic/ glutamate-1-semialdehyde 2,1-aminomutase/ pyridoxal phosphate binding / transaminase (TAIR:AT3G48730.1); Has 23045 Blast hits to 23042 proteins in 1677 species: Archae - 419; Bacteria - 12636; Metazoa - 462; Fungi - 520; Plants - 231; Viruses - 2; Other Eukaryotes - 8775 (source: NCBI BLink).  protein_id AT5G63570.1p  transcript_id AT5G63570.1  protein_id AT5G63570.1p  transcript_id AT5G63570.1  
At5g63580	chr5:025454730	0.0	W/25454730-25455118,25455638-25455965,25456057-25456092	AT5G63580.1  CDS  gene_syn FLAVONOL SYNTHASE 2, FLS2, MBK5.4, MBK5_4  gene FLS2  function encodes a protein whose sequence is similar to flavonol synthase  go_component cellular_component|GO:0005575||ND  go_process flavonoid biosynthetic process|GO:0009813|9112784|ISS  go_function flavonol synthase activity|GO:0045431|9112784|ISS  product FLS2 (FLAVONOL SYNTHASE 2); flavonol synthase  note FLAVONOL SYNTHASE 2 (FLS2); FUNCTIONS IN: flavonol synthase activity; INVOLVED IN: flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: FLS (FLAVONOL SYNTHASE); flavonol synthase (TAIR:AT5G08640.1); Has 4744 Blast hits to 4733 proteins in 613 species: Archae - 0; Bacteria - 594; Metazoa - 94; Fungi - 383; Plants - 2964; Viruses - 0; Other Eukaryotes - 709 (source: NCBI BLink).  protein_id AT5G63580.1p  transcript_id AT5G63580.1  protein_id AT5G63580.1p  transcript_id AT5G63580.1  
At5g63590	chr5:025458048	0.0	C/25458048-25458427,25457594-25457921,25457172-25457390	AT5G63590.1  CDS  gene_syn FLAVONOL SYNTHASE, FLAVONOL SYNTHASE 3, FLS, FLS3, MBK5.5, MBK5_5  gene FLS3  go_component cellular_component|GO:0005575||ND  go_process response to light stimulus|GO:0009416|9112784|IEP  go_process response to sucrose stimulus|GO:0009744|16384906|IEP  go_process flavonoid biosynthetic process|GO:0009813|9112784|ISS  go_function flavonol synthase activity|GO:0045431|9112784|ISS  go_function flavonol synthase activity|GO:0045431||ISS  product FLS3 (FLAVONOL SYNTHASE 3); flavonol synthase  note FLAVONOL SYNTHASE 3 (FLS3); FUNCTIONS IN: flavonol synthase activity; INVOLVED IN: response to light stimulus, response to sucrose stimulus, flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: seedling, hypocotyl, root; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: FLS (FLAVONOL SYNTHASE); flavonol synthase (TAIR:AT5G08640.1); Has 5507 Blast hits to 5492 proteins in 663 species: Archae - 0; Bacteria - 668; Metazoa - 98; Fungi - 483; Plants - 3054; Viruses - 0; Other Eukaryotes - 1204 (source: NCBI BLink).  protein_id AT5G63590.1p  transcript_id AT5G63590.1  protein_id AT5G63590.1p  transcript_id AT5G63590.1  
At5g63595	chr5:025460042	0.0	C/25460042-25460436,25459790-25459861,25459530-25459737,25459256-25459420	AT5G63595.1  CDS  gene_syn FLAVONOL SYNTHASE 4, FLS4  gene FLS4  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process flavonoid biosynthetic process|GO:0009813||ISS  go_function flavonol synthase activity|GO:0045431||ISS  product FLS4 (FLAVONOL SYNTHASE 4); flavonol synthase/ oxidoreductase  note FLAVONOL SYNTHASE 4 (FLS4); FUNCTIONS IN: flavonol synthase activity, oxidoreductase activity; INVOLVED IN: flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: FLS (FLAVONOL SYNTHASE); flavonol synthase (TAIR:AT5G08640.1); Has 5083 Blast hits to 5065 proteins in 627 species: Archae - 0; Bacteria - 630; Metazoa - 62; Fungi - 314; Plants - 3036; Viruses - 0; Other Eukaryotes - 1041 (source: NCBI BLink).  protein_id AT5G63595.1p  transcript_id AT5G63595.1  protein_id AT5G63595.1p  transcript_id AT5G63595.1  
At5g63600	chr5:025461852	0.0	C/25461852-25462270,25461395-25461727,25461082-25461310	AT5G63600.2  CDS  gene_syn FLAVONOL SYNTHASE 5, FLS5, MBK5.7, MBK5_7  gene FLS5  function encodes a protein whose sequence is similar to flavonol synthase  go_component cellular_component|GO:0005575||ND  go_process response to light stimulus|GO:0009416|9112784|IEP  go_process flavonoid biosynthetic process|GO:0009813|9112784|ISS  go_function flavonol synthase activity|GO:0045431|9112784|ISS  product FLS5 (FLAVONOL SYNTHASE 5); flavonol synthase  note FLAVONOL SYNTHASE 5 (FLS5); FUNCTIONS IN: flavonol synthase activity; INVOLVED IN: response to light stimulus, flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: seedling, hypocotyl, root, pollen tube; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: FLS (FLAVONOL SYNTHASE); flavonol synthase (TAIR:AT5G08640.1); Has 5478 Blast hits to 5461 proteins in 671 species: Archae - 0; Bacteria - 688; Metazoa - 85; Fungi - 486; Plants - 3062; Viruses - 0; Other Eukaryotes - 1157 (source: NCBI BLink).  protein_id AT5G63600.2p  transcript_id AT5G63600.2  protein_id AT5G63600.2p  transcript_id AT5G63600.2  
At5g63600	chr5:025461852	0.0	C/25461852-25462270,25461400-25461727,25461082-25461312	AT5G63600.1  CDS  gene_syn FLAVONOL SYNTHASE 5, FLS5, MBK5.7, MBK5_7  gene FLS5  function encodes a protein whose sequence is similar to flavonol synthase  go_component cellular_component|GO:0005575||ND  go_process response to light stimulus|GO:0009416|9112784|IEP  go_process flavonoid biosynthetic process|GO:0009813|9112784|ISS  go_function flavonol synthase activity|GO:0045431|9112784|ISS  product FLS5 (FLAVONOL SYNTHASE 5); flavonol synthase  note FLAVONOL SYNTHASE 5 (FLS5); FUNCTIONS IN: flavonol synthase activity; INVOLVED IN: response to light stimulus, flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: seedling, hypocotyl, root, pollen tube; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: FLS (FLAVONOL SYNTHASE); flavonol synthase (TAIR:AT5G08640.1); Has 5754 Blast hits to 5737 proteins in 679 species: Archae - 0; Bacteria - 710; Metazoa - 87; Fungi - 576; Plants - 3062; Viruses - 0; Other Eukaryotes - 1319 (source: NCBI BLink).  protein_id AT5G63600.1p  transcript_id AT5G63600.1  protein_id AT5G63600.1p  transcript_id AT5G63600.1  
At5g63610	chr5:025463645	0.0	C/25463645-25465057	AT5G63610.1  CDS  gene_syn CDKE;1, CYCLIN-DEPENDENT KINASE E;1, HEN3, HUA ENHANCER 3, MBK5.8, MBK5_8  gene CDKE;1  function significant sequence similarity to plant and animal cyclin-dependent protein kinases, and was classified as an E-type CDK with a SPTAIRE cyclin binding motif in the kinase domain.  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product CDKE;1 (CYCLIN-DEPENDENT KINASE E;1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note CYCLIN-DEPENDENT KINASE E;1 (CDKE;1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CDC2 (CELL DIVISION CONTROL 2); cyclin-dependent protein kinase/ kinase/ protein binding / protein kinase (TAIR:AT3G48750.1); Has 89574 Blast hits to 88494 proteins in 3125 species: Archae - 45; Bacteria - 7476; Metazoa - 39669; Fungi - 8229; Plants - 16820; Viruses - 438; Other Eukaryotes - 16897 (source: NCBI BLink).  protein_id AT5G63610.1p  transcript_id AT5G63610.1  protein_id AT5G63610.1p  transcript_id AT5G63610.1  
At5g63620	chr5:025468032	0.0	C/25468032-25468296,25467810-25467945,25467660-25467729,25467482-25467575,25467181-25467394,25466946-25467087,25466687-25466864,25466380-25466564	AT5G63620.2  CDS  gene_syn MBK5.9, MBK5_9  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function zinc ion binding|GO:0008270||ISS  product oxidoreductase, zinc-binding dehydrogenase family protein  note oxidoreductase, zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, binding, zinc ion binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: alcohol dehydrogenase, putative (TAIR:AT1G64710.1); Has 32773 Blast hits to 32685 proteins in 2069 species: Archae - 429; Bacteria - 17998; Metazoa - 1730; Fungi - 2561; Plants - 2781; Viruses - 3; Other Eukaryotes - 7271 (source: NCBI BLink).  protein_id AT5G63620.2p  transcript_id AT5G63620.2  protein_id AT5G63620.2p  transcript_id AT5G63620.2  
At5g63620	chr5:025468032	0.0	C/25468032-25468296,25467810-25467945,25467660-25467729,25467482-25467575,25467181-25467394,25466946-25467087,25466694-25466864,25466380-25466571	AT5G63620.1  CDS  gene_syn MBK5.9, MBK5_9  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function zinc ion binding|GO:0008270||ISS  product oxidoreductase, zinc-binding dehydrogenase family protein  note oxidoreductase, zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, binding, zinc ion binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: alcohol dehydrogenase, putative (TAIR:AT1G64710.1); Has 32783 Blast hits to 32696 proteins in 2070 species: Archae - 429; Bacteria - 18028; Metazoa - 1724; Fungi - 2557; Plants - 2783; Viruses - 3; Other Eukaryotes - 7259 (source: NCBI BLink).  protein_id AT5G63620.1p  transcript_id AT5G63620.1  protein_id AT5G63620.1p  transcript_id AT5G63620.1  
At5g63630	chr5:025475033	0.0	C/25475033-25475196,25474789-25474895,25474479-25474534,25474164-25474388,25473844-25474050,25473563-25473745,25473266-25473481,25472986-25473168,25472598-25472825	AT5G63630.1  CDS  gene_syn MBK5.11, MBK5_11  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD box RNA helicase, putative  note DEAD box RNA helicase, putative; FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase (RH26) (TAIR:AT5G08610.1); Has 27043 Blast hits to 26460 proteins in 1692 species: Archae - 431; Bacteria - 10802; Metazoa - 5031; Fungi - 3249; Plants - 1370; Viruses - 10; Other Eukaryotes - 6150 (source: NCBI BLink).  protein_id AT5G63630.1p  transcript_id AT5G63630.1  protein_id AT5G63630.1p  transcript_id AT5G63630.1  
At5g63634	chr5:025476302	0.0	C/25476302-25476511	AT5G63634.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G63634.1p  transcript_id AT5G63634.1  protein_id AT5G63634.1p  transcript_id AT5G63634.1  
At5g63640	chr5:025478935	0.0	W/25478935-25479035,25479248-25479326,25479436-25479534,25479639-25479752,25479857-25480017,25480100-25480175,25480295-25480380,25480465-25480755,25480885-25481221	AT5G63640.1  CDS  gene_syn MBK5.12, MBK5_12  go_component plasma membrane|GO:0005886|17317660|IDA  go_process intracellular protein transport|GO:0006886||IEA  go_component Golgi stack|GO:0005795||ISS  go_process intracellular protein transport|GO:0006886||ISS  go_process intra-Golgi vesicle-mediated transport|GO:0006891||ISS  go_function protein transporter activity|GO:0008565||ISS  product VHS domain-containing protein / GAT domain-containing protein  note VHS domain-containing protein / GAT domain-containing protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), GAT (InterPro:IPR004152), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: VHS domain-containing protein / GAT domain-containing protein (TAIR:AT1G21380.1); Has 963 Blast hits to 958 proteins in 131 species: Archae - 0; Bacteria - 4; Metazoa - 568; Fungi - 188; Plants - 147; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT5G63640.1p  transcript_id AT5G63640.1  protein_id AT5G63640.1p  transcript_id AT5G63640.1  
At5g63650	chr5:025483376	0.0	C/25483376-25483495,25483168-25483242,25482990-25483091,25482831-25482884,25482636-25482728,25482432-25482524,25482244-25482348,25482054-25482152,25481631-25481972	AT5G63650.1  CDS  gene_syn MBK5.13, MBK5_13, SNF1-RELATED PROTEIN KINASE 2.5, SNF1-RELATED PROTEIN KINASE 2H, SNRK2-5, SNRK2.5, SRK2H  gene SNRK2.5  function encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress.  go_component nucleus|GO:0005634|18433157|IDA  go_process response to osmotic stress|GO:0006970|15292193|IDA  go_process response to salt stress|GO:0009651|15292193|IDA  go_function kinase activity|GO:0016301|15292193|IDA  go_function kinase activity|GO:0016301||ISS  product SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5); kinase  note SNF1-RELATED PROTEIN KINASE 2.5 (SNRK2.5); FUNCTIONS IN: kinase activity; INVOLVED IN: response to salt stress, response to osmotic stress; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Plant protein serine/threonine kinase-like (InterPro:IPR015740), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: SNRK2.1 (SNF1-RELATED PROTEIN KINASE 2.1); kinase/ protein kinase (TAIR:AT5G08590.1); Has 109577 Blast hits to 87578 proteins in 2287 species: Archae - 102; Bacteria - 7555; Metazoa - 53822; Fungi - 9642; Plants - 15297; Viruses - 1058; Other Eukaryotes - 22101 (source: NCBI BLink).  protein_id AT5G63650.1p  transcript_id AT5G63650.1  protein_id AT5G63650.1p  transcript_id AT5G63650.1  
At5g63660	chr5:025485692	0.0	W/25485692-25485746,25485896-25486062	AT5G63660.1  CDS  gene_syn LCR74, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 74, MBK5.14, MBK5_14, PDF2.5  gene PDF2.5  function Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952|18674922|ISS  go_process defense response|GO:0006952||ISS  product PDF2.5  note PDF2.5; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, flower, root, seed; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Knottin (InterPro:IPR003614), Gamma Purothionin (InterPro:IPR008177); BEST Arabidopsis thaliana protein match is: LCR68 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 68); peptidase inhibitor (TAIR:AT2G02130.1); Has 284 Blast hits to 284 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 284; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G63660.1p  transcript_id AT5G63660.1  protein_id AT5G63660.1p  transcript_id AT5G63660.1  
At5g63670	chr5:025488012	0.0	W/25488012-25488101,25488206-25488297,25488636-25488691,25488993-25489054,25489197-25489247	AT5G63670.1  CDS  gene_syn MBK5.15, MBK5_15, SPT4 HOMOLOG 2, SPT42  gene SPT42  go_component nucleus|GO:0005634||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process positive regulation of transcription|GO:0045941||IEA  go_function positive transcription elongation factor activity|GO:0008159||IEA  go_function zinc ion binding|GO:0008270||IEA  product SPT42 (SPT4 HOMOLOG 2); positive transcription elongation factor/ zinc ion binding  note SPT4 HOMOLOG 2 (SPT42); FUNCTIONS IN: positive transcription elongation factor activity, zinc ion binding; INVOLVED IN: positive regulation of transcription, N-terminal protein myristoylation; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation Spt4 (InterPro:IPR009287), Transcription initiation Spt4-like (InterPro:IPR016046); BEST Arabidopsis thaliana protein match is: positive transcription elongation factor/ zinc ion binding (TAIR:AT5G08565.1); Has 324 Blast hits to 324 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 119; Plants - 27; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT5G63670.1p  transcript_id AT5G63670.1  protein_id AT5G63670.1p  transcript_id AT5G63670.1  
At5g63680	chr5:025490507	0.0	W/25490507-25490764,25491174-25491635,25491718-25492530	AT5G63680.1  CDS  gene_syn MBK5.16, MBK5_16  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function magnesium ion binding|GO:0000287||IEA  go_function catalytic activity|GO:0003824||IEA  go_function pyruvate kinase activity|GO:0004743||IEA  go_function potassium ion binding|GO:0030955||IEA  go_process glycolysis|GO:0006096||ISS  go_function pyruvate kinase activity|GO:0004743||ISS  product pyruvate kinase, putative  note pyruvate kinase, putative; FUNCTIONS IN: pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity; INVOLVED IN: response to cadmium ion, glycolysis; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate kinase, C-terminal-like (InterPro:IPR015795), Pyruvate kinase, active site (InterPro:IPR018209), Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), Pyruvate kinase, alpha/beta (InterPro:IPR015794), Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate kinase (InterPro:IPR001697), Pyruvate kinase, barrel (InterPro:IPR015793); BEST Arabidopsis thaliana protein match is: pyruvate kinase, putative (TAIR:AT5G08570.1); Has 6905 Blast hits to 6826 proteins in 1520 species: Archae - 99; Bacteria - 3257; Metazoa - 489; Fungi - 169; Plants - 284; Viruses - 0; Other Eukaryotes - 2607 (source: NCBI BLink).  protein_id AT5G63680.1p  transcript_id AT5G63680.1  protein_id AT5G63680.1p  transcript_id AT5G63680.1  
At5g63690	chr5:025492864	0.0	C/25492864-25493283	AT5G63690.1  CDS  gene_syn MBK5.17, MBK5_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340); Has 165 Blast hits to 164 proteins in 56 species: Archae - 3; Bacteria - 0; Metazoa - 135; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G63690.1p  transcript_id AT5G63690.1  protein_id AT5G63690.1p  transcript_id AT5G63690.1  
At5g63700	chr5:025497514	0.0	C/25497514-25497632,25496708-25496787,25496349-25496536,25495048-25496023,25494843-25494946,25494578-25494637,25494357-25494407,25493934-25494071	AT5G63700.1  CDS  gene_syn MBK5.18, MBK5_18  go_component nucleus|GO:0005634||IEA  go_process transcription initiation|GO:0006352||IEA  go_process histone modification|GO:0016570||IEA  go_function DNA binding|GO:0003677||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger (C3HC4 type RING finger) family protein  note zinc finger (C3HC4 type RING finger) family protein; FUNCTIONS IN: protein binding, DNA binding, zinc ion binding; INVOLVED IN: histone modification, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Plus-3 domain, subgroup (InterPro:IPR018144), SWIB/MDM2 (InterPro:IPR003121), Plus-3 (InterPro:IPR004343), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: SWIB complex BAF60b domain-containing protein / plus-3 domain-containing protein / GYF domain-containing protein (TAIR:AT5G08430.1); Has 914 Blast hits to 742 proteins in 89 species: Archae - 0; Bacteria - 2; Metazoa - 681; Fungi - 17; Plants - 95; Viruses - 2; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT5G63700.1p  transcript_id AT5G63700.1  protein_id AT5G63700.1p  transcript_id AT5G63700.1  
At5g63710	chr5:025499475	0.0	W/25499475-25499487,25500024-25500170,25500249-25500378,25500465-25500536,25500613-25500756,25500851-25500916,25501006-25501076,25501149-25501292,25501381-25501722,25501800-25502194,25502278-25502598	AT5G63710.1  CDS  gene_syn MBK5.19, MBK5_19  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / protein kinase family protein (TAIR:AT5G10290.1); Has 114194 Blast hits to 80882 proteins in 2953 species: Archae - 47; Bacteria - 7776; Metazoa - 34582; Fungi - 5603; Plants - 51115; Viruses - 380; Other Eukaryotes - 14691 (source: NCBI BLink).  protein_id AT5G63710.1p  transcript_id AT5G63710.1  protein_id AT5G63710.1p  transcript_id AT5G63710.1  
At5g63715	chr5:025504813	0.0	W/25504813-25504902	AT5G63715.1  miRNA  gene_syn MICRORNA 166, MICRORNA 166G, MIR166, MIR166G  gene MIR166G  function Encodes a microRNA that targets several HD-ZIPIII family members including PHV, PHB, REV, ATHB-8, and ATHB-15. Dominant gain of function alleles have enlarged meristems, fasciated stems and radialized leaves. During early embryo development expression is reciprocal to target mRNAs but then changes to overlapping expression with targets. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCGGACCAGGCUUCAUUCCCC  go_process gene silencing by miRNA|GO:0035195|15851028|IDA  product MIR166G (MICRORNA 166G); miRNA  transcript_id AT5G63715.1  
At5g63720	chr5:025506349	0.0	W/25506349-25506450,25506545-25506622,25506719-25508017	AT5G63720.1  CDS  gene_syn MBK5.20, MBK5_20  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; Has 4365 Blast hits to 3004 proteins in 271 species: Archae - 0; Bacteria - 1084; Metazoa - 1753; Fungi - 482; Plants - 117; Viruses - 6; Other Eukaryotes - 923 (source: NCBI BLink).  protein_id AT5G63720.1p  transcript_id AT5G63720.1  protein_id AT5G63720.1p  transcript_id AT5G63720.1  
At5g63730	chr5:025508868	0.0	C/25508868-25509706,25508100-25508781	AT5G63730.1  CDS  gene_syn MBK5.21, MBK5_21  go_component intracellular|GO:0005622||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product IBR domain-containing protein  note IBR domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: IBR domain-containing protein (TAIR:AT5G63750.1); Has 874 Blast hits to 870 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 394; Fungi - 80; Plants - 197; Viruses - 0; Other Eukaryotes - 203 (source: NCBI BLink).  protein_id AT5G63730.1p  transcript_id AT5G63730.1  protein_id AT5G63730.1p  transcript_id AT5G63730.1  
At5g63740	chr5:025510776	0.0	C/25510776-25511456	AT5G63740.1  CDS  gene_syn MBK5.22, MBK5_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product zinc finger protein-related  note zinc finger protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; BEST Arabidopsis thaliana protein match is: IBR domain-containing protein (TAIR:AT5G63750.1); Has 170470 Blast hits to 36102 proteins in 1424 species: Archae - 796; Bacteria - 47052; Metazoa - 42911; Fungi - 22009; Plants - 8592; Viruses - 2999; Other Eukaryotes - 46111 (source: NCBI BLink).  protein_id AT5G63740.1p  transcript_id AT5G63740.1  protein_id AT5G63740.1p  transcript_id AT5G63740.1  
At5g63750	chr5:025513831	0.0	C/25513831-25514729,25513038-25513749	AT5G63750.1  CDS  gene_syn MBK5.23, MBK5_23  go_component intracellular|GO:0005622||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product IBR domain-containing protein  note IBR domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: intracellular; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: IBR domain-containing protein (TAIR:AT5G63730.1); Has 1259 Blast hits to 1252 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 620; Fungi - 101; Plants - 298; Viruses - 0; Other Eukaryotes - 240 (source: NCBI BLink).  protein_id AT5G63750.1p  transcript_id AT5G63750.1  protein_id AT5G63750.1p  transcript_id AT5G63750.1  
At5g63760	chr5:025517024	0.0	C/25517024-25517718,25516255-25516918	AT5G63760.1  CDS  gene_syn MBK5.24, MBK5_24  go_component intracellular|GO:0005622||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product IBR domain-containing protein  note IBR domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: IBR domain-containing protein (TAIR:AT5G63750.1); Has 1361 Blast hits to 1359 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 751; Fungi - 99; Plants - 254; Viruses - 0; Other Eukaryotes - 257 (source: NCBI BLink).  protein_id AT5G63760.1p  transcript_id AT5G63760.1  protein_id AT5G63760.1p  transcript_id AT5G63760.1  
At5g63760	chr5:025517024	0.0	C/25517024-25517718,25516255-25516918	AT5G63760.2  CDS  gene_syn MBK5.24, MBK5_24  go_component intracellular|GO:0005622||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product IBR domain-containing protein  note IBR domain-containing protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: IBR domain-containing protein (TAIR:AT5G63750.1); Has 1361 Blast hits to 1359 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 751; Fungi - 99; Plants - 254; Viruses - 0; Other Eukaryotes - 257 (source: NCBI BLink).  protein_id AT5G63760.2p  transcript_id AT5G63760.2  protein_id AT5G63760.2p  transcript_id AT5G63760.2  
At5g63770	chr5:025519293	0.0	W/25519293-25520405,25520484-25520859,25520934-25521010,25521184-25521303,25521653-25521817,25521985-25522122,25522255-25522404	AT5G63770.1  CDS  gene_syn ATDGK2, Diacylglycerol kinase 2, MBK5.25, MBK5_25  gene ATDGK2  function a member of the diacylglycerol kinase gene family. Encodes a functional diacylglycerol kinase. Involved in root elongation and plant development. Gene expression is induced by wounding or cold.  go_component endomembrane system|GO:0012505||IEA  go_process activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|GO:0007205||ISS  go_process response to cold|GO:0009409|14665624|TAS  go_process response to wounding|GO:0009611|16081412|IEP  go_process root development|GO:0048364|16081412|IMP  go_process leaf development|GO:0048366|16081412|IMP  go_function diacylglycerol kinase activity|GO:0004143|14665624|IDA  go_function diacylglycerol kinase activity|GO:0004143||ISS  product ATDGK2 (Diacylglycerol kinase 2); diacylglycerol kinase  note Diacylglycerol kinase 2 (ATDGK2); FUNCTIONS IN: diacylglycerol kinase activity; INVOLVED IN: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway, response to cold, response to wounding, leaf development, root development; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Diacylglycerol kinase, catalytic region (InterPro:IPR001206), Diacylglycerol kinase accessory region (InterPro:IPR000756); BEST Arabidopsis thaliana protein match is: DGK1 (DIACYLGLYCEROL KINASE1); calcium ion binding / diacylglycerol kinase (TAIR:AT5G07920.1); Has 1744 Blast hits to 1260 proteins in 218 species: Archae - 0; Bacteria - 217; Metazoa - 1186; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink).  protein_id AT5G63770.1p  transcript_id AT5G63770.1  protein_id AT5G63770.1p  transcript_id AT5G63770.1  
At5g63770	chr5:025519755	0.0	W/25519755-25520405,25520484-25520859,25520934-25521010,25521184-25521303,25521653-25521817,25521985-25522122,25522255-25522404	AT5G63770.2  CDS  gene_syn ATDGK2, Diacylglycerol kinase 2, MBK5.25, MBK5_25  gene ATDGK2  function a member of the diacylglycerol kinase gene family. Encodes a functional diacylglycerol kinase. Involved in root elongation and plant development. Gene expression is induced by wounding or cold.  go_process activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|GO:0007205||ISS  go_process response to cold|GO:0009409|14665624|TAS  go_process response to wounding|GO:0009611|16081412|IEP  go_process root development|GO:0048364|16081412|IMP  go_process leaf development|GO:0048366|16081412|IMP  go_function diacylglycerol kinase activity|GO:0004143|14665624|IDA  go_function diacylglycerol kinase activity|GO:0004143||ISS  product ATDGK2 (Diacylglycerol kinase 2); diacylglycerol kinase  note Diacylglycerol kinase 2 (ATDGK2); FUNCTIONS IN: diacylglycerol kinase activity; INVOLVED IN: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway, response to cold, response to wounding, leaf development, root development; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase C, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Diacylglycerol kinase, catalytic region (InterPro:IPR001206), Diacylglycerol kinase accessory region (InterPro:IPR000756); BEST Arabidopsis thaliana protein match is: DGK1 (DIACYLGLYCEROL KINASE1); calcium ion binding / diacylglycerol kinase (TAIR:AT5G07920.1); Has 1477 Blast hits to 1225 proteins in 215 species: Archae - 0; Bacteria - 217; Metazoa - 930; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink).  protein_id AT5G63770.2p  transcript_id AT5G63770.2  protein_id AT5G63770.2p  transcript_id AT5G63770.2  
At5g63780	chr5:025525160	0.0	W/25525160-25526068,25526162-25526236,25526327-25526446	AT5G63780.1  CDS  gene_syn MBK5.26, MBK5_26, SHA1, shoot apical meristem arrest 1  gene SHA1  function Encodes SHA1 (shoot apical meristem arrest), a putative E3 ligase (a RING finger protein) required for post-embryonic SAM maintenance. The mutant sha1-1 shows a primary SAM-deficient phenotype at the adult stage.  go_function zinc ion binding|GO:0008270||IEA  go_process maintenance of shoot apical meristem identity|GO:0010492|17461786|IMP  go_process meristem development|GO:0048507|17461786|IMP  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product SHA1 (shoot apical meristem arrest 1); protein binding / zinc ion binding  note shoot apical meristem arrest 1 (SHA1); FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: maintenance of shoot apical meristem identity, meristem development; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G08750.2); Has 163 Blast hits to 163 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 162; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G63780.1p  transcript_id AT5G63780.1  protein_id AT5G63780.1p  transcript_id AT5G63780.1  
At5g63790	chr5:025527725	0.0	C/25527725-25528013,25527357-25527637,25526887-25527255	AT5G63790.1  CDS  gene_syn ANAC102, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 102, MBK5.27, MBK5_27  gene ANAC102  function Encodes a member of the NAC family of transcription factors. ANAC102 appears to have a role in mediating response to low oxygen stress (hypoxia) in germinating seedlings.  go_process response to hypoxia|GO:0001666|19176720|IMP  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ANAC102 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 102); transcription factor  note ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 102 (ANAC102); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, response to hypoxia; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ATAF2; transcription activator (TAIR:AT5G08790.1); Has 1620 Blast hits to 1617 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1620; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G63790.1p  transcript_id AT5G63790.1  protein_id AT5G63790.1p  transcript_id AT5G63790.1  
At5g63800	chr5:025530323	0.0	W/25530323-25530505,25532385-25532480,25532591-25532703,25532787-25532946,25533075-25533218,25533305-25533399,25533487-25533592,25533669-25533753,25533828-25534108,25534190-25534371,25534454-25534545,25534731-25534840,25534925-25535032,25535117-25535230,25535309-25535454,25535537-25535678	AT5G63800.1  CDS  gene_syn BGAL6, MBK5.28, MBK5_28, MUCILAGE-MODIFIED 2, MUM2, beta-galactosidase 6  gene MUM2  function Involved in mucilage formation. Mutants form columella and outer cell wall architecture of the mucilage cells resembles wild-type. However, mum2 seeds completely lack seed coat mucilage. This mutation appears to represent a later step in the development of this cell-type. Encodes a beta-galactosidase involved in seed coat mucilage biosynthesis. Member of Glycoside Hydrolase Family 35  go_component cell wall|GO:0005618|15593128|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_component cell wall|GO:0005618|18165329|IDA  go_process plant-type cell wall modification|GO:0009827|11706181|IMP  go_process mucilage biosynthetic process during seed coat development|GO:0048354|18165329|IMP  go_function beta-galactosidase activity|GO:0004565|18165329|IDA  go_function beta-galactosidase activity|GO:0004565||ISS  product MUM2 (MUCILAGE-MODIFIED 2); beta-galactosidase  note MUCILAGE-MODIFIED 2 (MUM2); FUNCTIONS IN: beta-galactosidase activity; INVOLVED IN: mucilage biosynthetic process during seed coat development, plant-type cell wall modification; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: BGAL16 (beta-galactosidase 16); beta-galactosidase/ catalytic/ cation binding / sugar binding (TAIR:AT1G77410.1); Has 1347 Blast hits to 1162 proteins in 256 species: Archae - 11; Bacteria - 434; Metazoa - 355; Fungi - 123; Plants - 371; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT5G63800.1p  transcript_id AT5G63800.1  protein_id AT5G63800.1p  transcript_id AT5G63800.1  
At5g63810	chr5:025537242	0.0	W/25537242-25537424,25537760-25537855,25537955-25538067,25538152-25538218,25538302-25538394,25538483-25538626,25538797-25538885,25539017-25539122,25539227-25539314,25539406-25539524,25539610-25539774,25539851-25540035,25540119-25540228,25540314-25540423,25540512-25540619,25540702-25540812,25540895-25541115,25541198-25541315	AT5G63810.1  CDS  gene_syn BGAL10, MGI19.1, MGI19_1, beta-galactosidase 10  gene BGAL10  function member of Glycoside Hydrolase Family 35  go_component cell wall|GO:0005618|14595688|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process lactose catabolic process|GO:0005990||IEA  go_process lactose catabolic process, using glucoside 3-dehydrogenase|GO:0019513||IEA  go_process lactose catabolic process via UDP-galactose|GO:0019515||IEA  go_function catalytic activity|GO:0003824||IEA  go_function beta-galactosidase activity|GO:0004565||IEA  go_function cation binding|GO:0043169||IEA  go_function beta-galactosidase activity|GO:0004565||ISS  product BGAL10 (beta-galactosidase 10); beta-galactosidase/ catalytic/ cation binding  note beta-galactosidase 10 (BGAL10); FUNCTIONS IN: cation binding, beta-galactosidase activity, catalytic activity; INVOLVED IN: lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: BGAL1 (Beta galactosidase 1); beta-galactosidase/ catalytic/ cation binding / heme binding / peroxidase/ sugar binding (TAIR:AT3G13750.1); Has 1161 Blast hits to 1151 proteins in 249 species: Archae - 11; Bacteria - 314; Metazoa - 309; Fungi - 118; Plants - 370; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT5G63810.1p  transcript_id AT5G63810.1  protein_id AT5G63810.1p  transcript_id AT5G63810.1  
At5g63820	chr5:025541576	0.0	W/25541576-25541647,25541820-25541930,25542033-25542237,25542319-25542440,25542519-25542594,25542802-25542893	AT5G63820.1  CDS  gene_syn MGI19.2, MGI19_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28920.1); Has 61 Blast hits to 60 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G63820.1p  transcript_id AT5G63820.1  protein_id AT5G63820.1p  transcript_id AT5G63820.1  
At5g63830	chr5:025543585	0.0	C/25543585-25544802	AT5G63830.1  CDS  gene_syn MGI19.3, MGI19_3  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529); Has 339 Blast hits to 334 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 177; Fungi - 84; Plants - 29; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT5G63830.1p  transcript_id AT5G63830.1  protein_id AT5G63830.1p  transcript_id AT5G63830.1  
At5g63840	chr5:025545056	0.0	W/25545056-25546624,25547046-25547319,25547405-25547540,25547864-25548074,25548206-25548412,25548554-25548922	AT5G63840.1  CDS  gene_syn MGI19.5, MGI19_5, RADIAL SWELLING 3, RSW3  gene RSW3  function radial swelling mutant shown to be specifically impaired in cellulose production. Encodes the alpha-subunit of a glucosidase II enzyme.  go_component chloroplast|GO:0009507|15028209|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process unidimensional cell growth|GO:0009826|10987560|IMP  go_process cellulose biosynthetic process|GO:0030244|10987560|IMP  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function glucosidase activity|GO:0015926|12492837|IMP  product RSW3 (RADIAL SWELLING 3); glucosidase/ hydrolase, hydrolyzing O-glycosyl compounds  note RADIAL SWELLING 3 (RSW3); FUNCTIONS IN: glucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to cadmium ion, cellulose biosynthetic process, unidimensional cell growth; LOCATED IN: endoplasmic reticulum, chloroplast; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 31 (InterPro:IPR000322); BEST Arabidopsis thaliana protein match is: HGL1 (heteroglycan glucosidase 1); hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT3G23640.2); Has 3189 Blast hits to 2927 proteins in 611 species: Archae - 49; Bacteria - 1466; Metazoa - 674; Fungi - 556; Plants - 144; Viruses - 0; Other Eukaryotes - 300 (source: NCBI BLink).  protein_id AT5G63840.1p  transcript_id AT5G63840.1  protein_id AT5G63840.1p  transcript_id AT5G63840.1  
At5g63850	chr5:025551494	0.0	W/25551494-25551554,25551643-25551876,25552001-25552094,25552190-25552404,25552483-25552622,25552718-25553374	AT5G63850.1  CDS  gene_syn AAP4, MGI19.6, MGI19_6  gene AAP4  function Amino acid transporter whose expression is downregulated by dehydration.  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865|7608199|TAS  go_process response to water deprivation|GO:0009414|8776904|IEP  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  go_function acidic amino acid transmembrane transporter activity|GO:0015172|7608199|IDA  go_function neutral amino acid transmembrane transporter activity|GO:0015175|7608199|IDA  go_function primary active transmembrane transporter activity|GO:0015399|7608199|IDA  product AAP4; acidic amino acid transmembrane transporter/ amino acid transmembrane transporter/ neutral amino acid transmembrane transporter/ primary active transmembrane transporter  note AAP4; FUNCTIONS IN: neutral amino acid transmembrane transporter activity, acidic amino acid transmembrane transporter activity, amino acid transmembrane transporter activity, primary active transmembrane transporter activity; INVOLVED IN: response to water deprivation, amino acid transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: AAP2 (AMINO ACID PERMEASE 2); amino acid transmembrane transporter (TAIR:AT5G09220.1); Has 1589 Blast hits to 1581 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 394; Fungi - 225; Plants - 708; Viruses - 0; Other Eukaryotes - 262 (source: NCBI BLink).  protein_id AT5G63850.1p  transcript_id AT5G63850.1  protein_id AT5G63850.1p  transcript_id AT5G63850.1  
At5g63860	chr5:025558494	0.0	C/25558494-25558587,25558120-25558306,25557782-25557928,25557488-25557569,25556941-25557096,25556360-25556533,25556083-25556154,25555771-25555842,25555519-25555637,25555250-25555335,25555106-25555158,25554821-25554901	AT5G63860.1  CDS  gene_syn MGI19.7, MGI19_7, UVB-RESISTANCE 8, UVR8  gene UVR8  function UV-B-specific signaling component that orchestrates expression of a range of genes with vital UV-protective functions. Located in the nucleus and the cytosol. Associates with chromatin via histones. UV-B light promotes URV8 protein accumulation in the nucleus.  go_component nucleus|GO:0005634|16330762|IDA  go_component cytosol|GO:0005829|16330762|IDA  go_process response to UV|GO:0009411|12226503|IMP  go_process response to UV-B|GO:0010224|16330762|IGI  go_process response to UV-B|GO:0010224|17720867|IEP  go_function chromatin binding|GO:0003682|16330762|IDA  go_function guanyl-nucleotide exchange factor activity|GO:0005085|12226503|ISS  product UVR8 (UVB-RESISTANCE 8); chromatin binding / guanyl-nucleotide exchange factor  note UVB-RESISTANCE 8 (UVR8); FUNCTIONS IN: chromatin binding, guanyl-nucleotide exchange factor activity; INVOLVED IN: response to UV, response to UV-B; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Ran GTPase binding / chromatin binding / zinc ion binding (TAIR:AT5G12350.1); Has 20763 Blast hits to 4855 proteins in 314 species: Archae - 68; Bacteria - 2132; Metazoa - 7909; Fungi - 1114; Plants - 1619; Viruses - 2; Other Eukaryotes - 7919 (source: NCBI BLink).  protein_id AT5G63860.1p  transcript_id AT5G63860.1  protein_id AT5G63860.1p  transcript_id AT5G63860.1  
At5g63870	chr5:025562513	0.0	C/25562513-25562908,25561925-25562434	AT5G63870.3  CDS  gene_syn ATPP7, MGI19.12, MGI19_12, PP7, SERINE/THREONINE PHOSPHATASE 7  gene PP7  function Encodes a nuclear localized serine/threonine phosphatase that appears to be regulated by redox activity and is a positive regulator of cryptochrome mediated blue light signalling.  go_component nucleus|GO:0005634|11703093|IDA  go_process blue light signaling pathway|GO:0009785|12724537|IMP  go_function protein serine/threonine phosphatase activity|GO:0004722|9862444|IDA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PP7 (SERINE/THREONINE PHOSPHATASE 7); protein serine/threonine phosphatase  note SERINE/THREONINE PHOSPHATASE 7 (PP7); FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: blue light signaling pathway; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: calcineurin-like phosphoesterase family protein (TAIR:AT1G48120.1); Has 4942 Blast hits to 4920 proteins in 348 species: Archae - 49; Bacteria - 137; Metazoa - 1943; Fungi - 845; Plants - 556; Viruses - 0; Other Eukaryotes - 1412 (source: NCBI BLink).  protein_id AT5G63870.3p  transcript_id AT5G63870.3  protein_id AT5G63870.3p  transcript_id AT5G63870.3  
At5g63870	chr5:025562513	0.0	C/25562513-25562908,25561940-25562434,25561705-25561851,25561522-25561629,25561336-25561431	AT5G63870.1  CDS  gene_syn ATPP7, MGI19.12, MGI19_12, PP7, SERINE/THREONINE PHOSPHATASE 7  gene PP7  function Encodes a nuclear localized serine/threonine phosphatase that appears to be regulated by redox activity and is a positive regulator of cryptochrome mediated blue light signalling.  go_component nucleus|GO:0005634|11703093|IDA  go_process blue light signaling pathway|GO:0009785|12724537|IMP  go_function protein serine/threonine phosphatase activity|GO:0004722|9862444|IDA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PP7 (SERINE/THREONINE PHOSPHATASE 7); protein serine/threonine phosphatase  note SERINE/THREONINE PHOSPHATASE 7 (PP7); FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: blue light signaling pathway; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: calcineurin-like phosphoesterase family protein (TAIR:AT1G48120.1); Has 5054 Blast hits to 5007 proteins in 349 species: Archae - 49; Bacteria - 137; Metazoa - 1978; Fungi - 868; Plants - 584; Viruses - 0; Other Eukaryotes - 1438 (source: NCBI BLink).  protein_id AT5G63870.1p  transcript_id AT5G63870.1  protein_id AT5G63870.1p  transcript_id AT5G63870.1  
At5g63870	chr5:025562513	0.0	C/25562513-25562908,25561940-25562434,25561705-25561851,25561522-25561629,25561336-25561431	AT5G63870.2  CDS  gene_syn ATPP7, MGI19.12, MGI19_12, PP7, SERINE/THREONINE PHOSPHATASE 7  gene PP7  function Encodes a nuclear localized serine/threonine phosphatase that appears to be regulated by redox activity and is a positive regulator of cryptochrome mediated blue light signalling.  go_component nucleus|GO:0005634|11703093|IDA  go_process blue light signaling pathway|GO:0009785|12724537|IMP  go_function protein serine/threonine phosphatase activity|GO:0004722|9862444|IDA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PP7 (SERINE/THREONINE PHOSPHATASE 7); protein serine/threonine phosphatase  note SERINE/THREONINE PHOSPHATASE 7 (PP7); FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: blue light signaling pathway; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: calcineurin-like phosphoesterase family protein (TAIR:AT1G48120.1); Has 5054 Blast hits to 5007 proteins in 349 species: Archae - 49; Bacteria - 137; Metazoa - 1978; Fungi - 868; Plants - 584; Viruses - 0; Other Eukaryotes - 1438 (source: NCBI BLink).  protein_id AT5G63870.2p  transcript_id AT5G63870.2  protein_id AT5G63870.2p  transcript_id AT5G63870.2  
At5g63880	chr5:025563890	0.0	W/25563890-25563991,25564225-25564377,25564472-25564624,25564831-25564914,25564996-25565137,25565233-25565258	AT5G63880.1  CDS  gene_syn MGI19.8, MGI19_8, VPS20, VPS20.1  gene VPS20.1  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component ESCRT III complex|GO:0000815|17090720|ISS  go_process vesicle-mediated transport|GO:0016192|16488176|ISS  product VPS20.1  note VPS20.1; INVOLVED IN: vesicle-mediated transport, N-terminal protein myristoylation; LOCATED IN: ESCRT III complex, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: VPS20.2 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 20.2) (TAIR:AT5G09260.1); Has 1502 Blast hits to 1439 proteins in 224 species: Archae - 29; Bacteria - 103; Metazoa - 652; Fungi - 285; Plants - 140; Viruses - 4; Other Eukaryotes - 289 (source: NCBI BLink).  protein_id AT5G63880.1p  transcript_id AT5G63880.1  protein_id AT5G63880.1p  transcript_id AT5G63880.1  
At5g63890	chr5:025567736	0.0	C/25567736-25567879,25567601-25567653,25567445-25567517,25567245-25567346,25567071-25567172,25566903-25566974,25566749-25566811,25566552-25566653,25566354-25566464,25566054-25566224,25565600-25565965	AT5G63890.1  CDS  gene_syn ATHDH, HISTIDINOL DEHYDROGENASE, MGI19.9, MGI19_9  gene ATHDH  function Encodes histidinol dehydrogenase. Up-regulated in response to UV-B.  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to UV|GO:0009411|10358052|IEP  go_process pollen development|GO:0009555|19237690|IMP  go_function histidinol dehydrogenase activity|GO:0004399|10358052|TAS  product ATHDH (HISTIDINOL DEHYDROGENASE); histidinol dehydrogenase  note HISTIDINOL DEHYDROGENASE (ATHDH); FUNCTIONS IN: histidinol dehydrogenase activity; INVOLVED IN: response to UV, pollen development; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Histidinol dehydrogenase, conserved site (InterPro:IPR001692), Histidinol dehydrogenase, prokaryotic-type (InterPro:IPR012131); Has 7145 Blast hits to 7145 proteins in 1252 species: Archae - 119; Bacteria - 2353; Metazoa - 1; Fungi - 154; Plants - 39; Viruses - 0; Other Eukaryotes - 4479 (source: NCBI BLink).  protein_id AT5G63890.1p  transcript_id AT5G63890.1  protein_id AT5G63890.1p  transcript_id AT5G63890.1  
At5g63890	chr5:025568029	0.0	C/25568029-25568104,25567736-25567845,25567601-25567653,25567445-25567517,25567245-25567346,25567071-25567172,25566903-25566974,25566749-25566811,25566552-25566653,25566354-25566464,25566054-25566224,25565600-25565965	AT5G63890.2  CDS  gene_syn ATHDH, HISTIDINOL DEHYDROGENASE, MGI19.9, MGI19_9  gene ATHDH  function Encodes histidinol dehydrogenase. Up-regulated in response to UV-B.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_process response to UV|GO:0009411|10358052|IEP  go_process pollen development|GO:0009555|19237690|IMP  go_function histidinol dehydrogenase activity|GO:0004399|10358052|TAS  product ATHDH (HISTIDINOL DEHYDROGENASE); histidinol dehydrogenase  note HISTIDINOL DEHYDROGENASE (ATHDH); FUNCTIONS IN: histidinol dehydrogenase activity; INVOLVED IN: response to UV, pollen development; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Histidinol dehydrogenase, conserved site (InterPro:IPR001692), Histidinol dehydrogenase, prokaryotic-type (InterPro:IPR012131); Has 7144 Blast hits to 7144 proteins in 1252 species: Archae - 119; Bacteria - 2353; Metazoa - 1; Fungi - 154; Plants - 39; Viruses - 0; Other Eukaryotes - 4478 (source: NCBI BLink).  protein_id AT5G63890.2p  transcript_id AT5G63890.2  protein_id AT5G63890.2p  transcript_id AT5G63890.2  
At5g63900	chr5:025568698	0.0	W/25568698-25570371	AT5G63900.1  CDS  gene_syn MGI19.10, MGI19_10  go_process metabolic process|GO:0008152||IEA  go_function protein binding|GO:0005515||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product PHD finger family protein  note PHD finger family protein; FUNCTIONS IN: protein binding, DNA binding, zinc ion binding, N-acetyltransferase activity; INVOLVED IN: regulation of transcription, DNA-dependent, metabolic process; LOCATED IN: nucleus; EXPRESSED IN: leaf lamina base, leaf whorl, flower, seed, leaf; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: PHD finger transcription factor, putative (TAIR:AT5G58610.1); Has 2884 Blast hits to 2325 proteins in 156 species: Archae - 0; Bacteria - 5; Metazoa - 2283; Fungi - 106; Plants - 246; Viruses - 0; Other Eukaryotes - 244 (source: NCBI BLink).  protein_id AT5G63900.1p  transcript_id AT5G63900.1  protein_id AT5G63900.1p  transcript_id AT5G63900.1  
At5g63905	chr5:025571394	0.0	C/25571394-25571503,25571156-25571261,25571055-25571069	AT5G63905.1  CDS  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; Has 15 Blast hits to 15 proteins in 7 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G63905.1p  transcript_id AT5G63905.1  protein_id AT5G63905.1p  transcript_id AT5G63905.1  
At5g63910	chr5:025573544	0.0	C/25573544-25574077,25573172-25573345,25572667-25573026,25572399-25572574,25572053-25572311	AT5G63910.1  CDS  gene_syn FARNESYLCYSTEINE LYASE, FCLY, MGI19.4, MGI19_4  gene FCLY  function encodes for a farnesylcysteine lyase (EC 1.8.3.5 - prenylcysteine oxidase) involved in a salvage pathway of farnesyl diphosphate.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component endomembrane system|GO:0012505|17425716|IDA  go_process farnesyl diphosphate metabolic process|GO:0045338|17425716|IDA  go_function prenylcysteine oxidase activity|GO:0001735|17425716|IDA  product FCLY (FARNESYLCYSTEINE LYASE); prenylcysteine oxidase  note FARNESYLCYSTEINE LYASE (FCLY); FUNCTIONS IN: prenylcysteine oxidase activity; INVOLVED IN: farnesyl diphosphate metabolic process; LOCATED IN: endomembrane system, plasma membrane, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Prenylcysteine lyase (InterPro:IPR010795), Prenylcysteine oxidase (InterPro:IPR017046); Has 244 Blast hits to 243 proteins in 75 species: Archae - 0; Bacteria - 17; Metazoa - 120; Fungi - 58; Plants - 18; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT5G63910.1p  transcript_id AT5G63910.1  protein_id AT5G63910.1p  transcript_id AT5G63910.1  
At5g63920	chr5:025574533	0.0	W/25574533-25574829,25575077-25575255,25575348-25575420,25575513-25575635,25575741-25575862,25575939-25576011,25576108-25576227,25576416-25576499,25576590-25576769,25576858-25576986,25577179-25577253,25577757-25577846,25577973-25578077,25578650-25578684,25578954-25579083,25579224-25579276,25579354-25579453,25579546-25579584,25579767-25579845,25579973-25580044,25580188-25580259,25580423-25580590,25580747-25580867,25580969-25581230	AT5G63920.1  CDS  gene_syn MGI19.16  go_component chromosome|GO:0005694||IEA  go_process DNA metabolic process|GO:0006259||IEA  go_process DNA topological change|GO:0006265||IEA  go_process DNA unwinding during replication|GO:0006268||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA topoisomerase activity|GO:0003916||IEA  go_function DNA topoisomerase type I activity|GO:0003917||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process DNA topological change|GO:0006265||ISS  go_process DNA unwinding during replication|GO:0006268||ISS  go_function DNA binding|GO:0003677||ISS  go_function DNA topoisomerase activity|GO:0003916||ISS  product DNA topoisomerase III alpha, putative  note DNA topoisomerase III alpha, putative; FUNCTIONS IN: DNA topoisomerase activity, DNA topoisomerase type I activity, DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: DNA topological change, DNA unwinding during replication, DNA metabolic process; LOCATED IN: chromosome; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase, type IA, zn finger (InterPro:IPR013498), DNA topoisomerase, type IA, core (InterPro:IPR000380), DNA topoisomerase, type IA, domain 2 (InterPro:IPR003601), DNA topoisomerase, type IA, DNA-binding (InterPro:IPR003602), DNA topoisomerase, type IA, central (InterPro:IPR013497), Zinc finger, GRF-type (InterPro:IPR010666), DNA topoisomerase, type IA, central region, subdomain 3 (InterPro:IPR013826), Toprim subdomain (InterPro:IPR006154), DNA topoisomerase, type IA, central region, subdomain 1 (InterPro:IPR013824), TOPRIM (InterPro:IPR006171), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: DNA topoisomerase family protein (TAIR:AT2G32000.1); Has 9761 Blast hits to 9473 proteins in 1671 species: Archae - 241; Bacteria - 4496; Metazoa - 437; Fungi - 186; Plants - 283; Viruses - 25; Other Eukaryotes - 4093 (source: NCBI BLink).  protein_id AT5G63920.1p  transcript_id AT5G63920.1  protein_id AT5G63920.1p  transcript_id AT5G63920.1  
At5g63930	chr5:025583006	0.0	W/25583006-25585937,25586016-25586392	AT5G63930.1  CDS  gene_syn MBM17.3, MBM17_3  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT2G33170.1); Has 161227 Blast hits to 96077 proteins in 3141 species: Archae - 103; Bacteria - 13007; Metazoa - 59975; Fungi - 7245; Plants - 58629; Viruses - 416; Other Eukaryotes - 21852 (source: NCBI BLink).  protein_id AT5G63930.1p  transcript_id AT5G63930.1  protein_id AT5G63930.1p  transcript_id AT5G63930.1  
At5g63940	chr5:025588254	0.0	W/25588254-25588434,25588521-25588603,25588717-25588948,25589029-25589625,25589711-25589959,25590043-25590206,25590298-25590377,25590464-25590611,25590744-25590893,25590996-25591229	AT5G63940.1  CDS  gene_syn MBM17.4, MBM17_4  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process response to stress|GO:0006950||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G21590.1); Has 83722 Blast hits to 82719 proteins in 2148 species: Archae - 52; Bacteria - 7839; Metazoa - 35845; Fungi - 6581; Plants - 18633; Viruses - 394; Other Eukaryotes - 14378 (source: NCBI BLink).  protein_id AT5G63940.1p  transcript_id AT5G63940.1  protein_id AT5G63940.1p  transcript_id AT5G63940.1  
At5g63941	chr5:025591554	0.0	W/25591554-25591740	AT5G63941.1  pseudogenic_transcript  pseudo  function Pseudogene of AT5G09270  
At5g63950	chr5:025598294	0.0	C/25598294-25598405,25598070-25598201,25596829-25597817,25596621-25596751,25596487-25596541,25596102-25596230,25595831-25595938,25595694-25595749,25595527-25595617,25595018-25595149,25594855-25594932,25594386-25594595,25594229-25594300,25594069-25594149,25593838-25593956,25593382-25593493,25593211-25593279,25593019-25593113,25592806-25592937,25592648-25592713,25592417-25592552,25592160-25592327	AT5G63950.1  CDS  gene_syn CHR24, ERCC6, MBM17.5, MBM17_5, RAD26, chromatin remodeling 24  gene CHR24  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function DNA binding|GO:0003677||ISS  go_function helicase activity|GO:0004386||ISS  go_function ATP binding|GO:0005524||ISS  product CHR24 (chromatin remodeling 24); ATP binding / DNA binding / helicase/ nucleic acid binding  note chromatin remodeling 24 (CHR24); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: CHR8 (chromatin remodeling 8); ATP binding / DNA binding / helicase/ nucleic acid binding (TAIR:AT2G18760.1); Has 12630 Blast hits to 10900 proteins in 1091 species: Archae - 71; Bacteria - 2791; Metazoa - 3257; Fungi - 2676; Plants - 756; Viruses - 128; Other Eukaryotes - 2951 (source: NCBI BLink).  protein_id AT5G63950.1p  transcript_id AT5G63950.1  protein_id AT5G63950.1p  transcript_id AT5G63950.1  
At5g63952	chr5:025598793	0.0	W/25598793-25598945	AT5G63952.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G63952.1p  transcript_id AT5G63952.1  protein_id AT5G63952.1p  transcript_id AT5G63952.1  
At5g63960	chr5:025599597	0.0	W/25599597-25599882,25599977-25600087,25600169-25600275,25600355-25600514,25600603-25600798,25600892-25601027,25601115-25601252,25601463-25601540,25601723-25601814,25601947-25602013,25602105-25602176,25602253-25602339,25602854-25602973,25603049-25603147,25603254-25603361,25603467-25603562,25603699-25603764,25603860-25603916,25604044-25604131,25604212-25604291,25604391-25604504,25604652-25604766,25604841-25605013,25605151-25605222,25605662-25605736,25605828-25605917,25606003-25606163,25606247-25606314,25606392-25606479,25606585-25606672	AT5G63960.1  CDS  gene_syn EMB2780, EMBRYO DEFECTIVE 2780, MBM17.6, MBM17_6  gene EMB2780  go_component nucleus|GO:0005634||IEA  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_process DNA replication|GO:0006260||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed DNA polymerase activity|GO:0003887||IEA  go_function DNA-directed DNA polymerase activity|GO:0003887||ISS  product EMB2780 (EMBRYO DEFECTIVE 2780); DNA binding / DNA-directed DNA polymerase/ nucleic acid binding / nucleotide binding  note EMBRYO DEFECTIVE 2780 (EMB2780); FUNCTIONS IN: DNA-directed DNA polymerase activity, DNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, DNA replication; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-directed DNA polymerase, family B, exonuclease (InterPro:IPR006133), DNA-directed DNA polymerase, family B, conserved region2 (InterPro:IPR017966), DNA-directed DNA polymerase, family B, conserved region (InterPro:IPR006134), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), DNA-directed DNA polymerase, family B, conserved site (InterPro:IPR017964), DNA-directed DNA polymerase, family B (InterPro:IPR006172), DNA-directed DNA polymerase, family B, pol2 (InterPro:IPR004578); BEST Arabidopsis thaliana protein match is: ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3); DNA binding / DNA-directed DNA polymerase (TAIR:AT1G67500.1); Has 6439 Blast hits to 5926 proteins in 1069 species: Archae - 328; Bacteria - 659; Metazoa - 463; Fungi - 457; Plants - 109; Viruses - 1931; Other Eukaryotes - 2492 (source: NCBI BLink).  protein_id AT5G63960.1p  transcript_id AT5G63960.1  protein_id AT5G63960.1p  transcript_id AT5G63960.1  
At5g63970	chr5:025608848	0.0	C/25608848-25608916,25608684-25608768,25608457-25608597,25608258-25608371,25608001-25608178,25607818-25607923,25607622-25607740,25607356-25607506,25607197-25607253,25607006-25607089	AT5G63970.1  CDS  gene_syn MBM17.7, MBM17_7  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product copine-related  note copine-related; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Copine (InterPro:IPR010734), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: RGLG1 (RING domain Ligase1); protein binding / zinc ion binding (TAIR:AT3G01650.1); Has 1324 Blast hits to 1320 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 910; Fungi - 0; Plants - 170; Viruses - 35; Other Eukaryotes - 209 (source: NCBI BLink).  protein_id AT5G63970.1p  transcript_id AT5G63970.1  protein_id AT5G63970.1p  transcript_id AT5G63970.1  
At5g63970	chr5:025608848	0.0	C/25608848-25608916,25608684-25608768,25608457-25608597,25608258-25608371,25608001-25608178,25607818-25607923,25607622-25607740,25607356-25607506,25607197-25607253,25607006-25607089	AT5G63970.2  CDS  gene_syn MBM17.7, MBM17_7  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product copine-related  note copine-related; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Copine (InterPro:IPR010734), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: RGLG1 (RING domain Ligase1); protein binding / zinc ion binding (TAIR:AT3G01650.1); Has 1324 Blast hits to 1320 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 910; Fungi - 0; Plants - 170; Viruses - 35; Other Eukaryotes - 209 (source: NCBI BLink).  protein_id AT5G63970.2p  transcript_id AT5G63970.2  protein_id AT5G63970.2p  transcript_id AT5G63970.2  
At5g63980	chr5:025609840	0.0	W/25609840-25610067,25610294-25610369,25610476-25610549,25610647-25610852,25610972-25611287,25611379-25611532,25611633-25611802	AT5G63980.1  CDS  gene_syn ALTERED EXPRESSION OF APX2 8, ALX8, ATSAL1, FIERY1, FRY1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, HOS2, MBM17.8, MBM17_8, SAL1  gene SAL1  function Encodes a bifunctional protein that has 3 (2 ),5 -bisphosphate nucleotidase and inositol polyphosphate 1-phosphatase activities and rescues sulfur assimilation mutants in yeast. It is involved in the response to cold, drought (negative regulator of drought tolerance), and ABA. Mutants in this gene exhibit enhanced induction of stress genes in response to cold, ABA, salt and dehydration due to higher accumulation of the second messenger, inositol (1,4,5)- triphosphate (IP(3)). Involved in degradation of small mRNAs. Mutants also affect the accumulation of miRNA target cleavage products. Regulates light-dependent repression of hypocotyl elongation and flowering time via its 3 (2 ),5 -bisphosphate nucleotidase activity.  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component nucleus|GO:0005634|19077168|IDA  go_component cytoplasm|GO:0005737|19077168|IDA  go_process RNA catabolic process|GO:0006401|17993620|IMP  go_process sulfur metabolic process|GO:0006790|8721754|IGI  go_process sulfur metabolic process|GO:0006790||ISS  go_process response to cold|GO:0009409|10097388|IMP  go_process response to water deprivation|GO:0009414|19170934|IMP  go_process response to light stimulus|GO:0009416|19077168|IEP  go_process response to light stimulus|GO:0009416|19077168|IMP  go_process response to abiotic stimulus|GO:0009628|11485991|IMP  go_process abscisic acid mediated signaling|GO:0009738|11485991|IMP  go_process negative regulation of signal transduction|GO:0009968|10097388|IMP  go_process miRNA catabolic process|GO:0010587|17993620|IMP  go_process negative regulation of transcription|GO:0016481|10097388|IEP  go_process response to cation stress|GO:0043157|8721754|IGI  go_process phosphoinositide-mediated signaling|GO:0048015|8721754|TAS  go_process photoperiodism, flowering|GO:0048573|19077168|IMP  go_process positive regulation of unidimensional cell growth|GO:0051512|19077168|IMP  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437|8721754|IDA  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437||ISS  go_function 3 (2 ),5 -bisphosphate nucleotidase activity|GO:0008441|8721754|IDA  go_function 3 (2 ),5 -bisphosphate nucleotidase activity|GO:0008441||ISS  product SAL1; 3 (2 ),5 -bisphosphate nucleotidase/ inositol or phosphatidylinositol phosphatase  note SAL1; FUNCTIONS IN: 3 (2 ),5 -bisphosphate nucleotidase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: in 14 processes; LOCATED IN: nucleus, chloroplast stroma, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inositol monophosphatase (InterPro:IPR000760), 3(2),5 -bisphosphate nucleotidase HAL2 (InterPro:IPR006239); BEST Arabidopsis thaliana protein match is: SAL2; 3 (2 ),5 -bisphosphate nucleotidase/ inositol or phosphatidylinositol phosphatase (TAIR:AT5G64000.1); Has 5744 Blast hits to 5744 proteins in 1037 species: Archae - 24; Bacteria - 3082; Metazoa - 189; Fungi - 173; Plants - 166; Viruses - 0; Other Eukaryotes - 2110 (source: NCBI BLink).  protein_id AT5G63980.1p  transcript_id AT5G63980.1  protein_id AT5G63980.1p  transcript_id AT5G63980.1  
At5g63990	chr5:025613387	0.0	W/25613387-25613452,25613873-25613948,25614061-25614134,25614224-25614432,25614835-25615048,25615137-25615226,25615303-25615456,25615546-25615736	AT5G63990.1  CDS  gene_syn MBM17.9, MBM17_9  go_process sulfur metabolic process|GO:0006790||IEA  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437||IEA  go_function 3 (2 ),5 -bisphosphate nucleotidase activity|GO:0008441||IEA  go_component cellular_component|GO:0005575||ND  go_process sulfur metabolic process|GO:0006790||ISS  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437||ISS  go_function 3 (2 ),5 -bisphosphate nucleotidase activity|GO:0008441||ISS  product 3 (2 ),5 -bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putative  note 3 (2 ),5 -bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putative; FUNCTIONS IN: 3 (2 ),5 -bisphosphate nucleotidase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: sulfur metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Inositol monophosphatase (InterPro:IPR000760), 3(2),5 -bisphosphate nucleotidase HAL2 (InterPro:IPR006239); BEST Arabidopsis thaliana protein match is: SAL2; 3 (2 ),5 -bisphosphate nucleotidase/ inositol or phosphatidylinositol phosphatase (TAIR:AT5G64000.1); Has 4148 Blast hits to 4148 proteins in 866 species: Archae - 17; Bacteria - 2214; Metazoa - 108; Fungi - 158; Plants - 112; Viruses - 0; Other Eukaryotes - 1539 (source: NCBI BLink).  protein_id AT5G63990.1p  transcript_id AT5G63990.1  protein_id AT5G63990.1p  transcript_id AT5G63990.1  
At5g63990	chr5:025613387	0.0	W/25613387-25613452,25613873-25613948,25614061-25614134,25614224-25614432,25614835-25615048,25615137-25615226,25615303-25615470	AT5G63990.2  CDS  gene_syn MBM17.9, MBM17_9  go_process sulfur metabolic process|GO:0006790||IEA  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437||IEA  go_function 3 (2 ),5 -bisphosphate nucleotidase activity|GO:0008441||IEA  go_component cellular_component|GO:0005575||ND  go_process sulfur metabolic process|GO:0006790||ISS  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437||ISS  go_function 3 (2 ),5 -bisphosphate nucleotidase activity|GO:0008441||ISS  product 3 (2 ),5 -bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putative  note 3 (2 ),5 -bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putative; FUNCTIONS IN: 3 (2 ),5 -bisphosphate nucleotidase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: sulfur metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Inositol monophosphatase (InterPro:IPR000760), 3(2),5 -bisphosphate nucleotidase HAL2 (InterPro:IPR006239); BEST Arabidopsis thaliana protein match is: SAL2; 3 (2 ),5 -bisphosphate nucleotidase/ inositol or phosphatidylinositol phosphatase (TAIR:AT5G64000.1); Has 1572 Blast hits to 1572 proteins in 505 species: Archae - 2; Bacteria - 859; Metazoa - 3; Fungi - 156; Plants - 98; Viruses - 0; Other Eukaryotes - 454 (source: NCBI BLink).  protein_id AT5G63990.2p  transcript_id AT5G63990.2  protein_id AT5G63990.2p  transcript_id AT5G63990.2  
At5g64000	chr5:025616664	0.0	W/25616664-25616729,25616815-25616890,25617022-25617095,25617181-25617386,25617477-25617690,25617774-25617863,25617966-25618119,25618315-25618478	AT5G64000.1  CDS  gene_syn ATSAL2, MBM17.10, MBM17_10, SAL2  gene SAL2  function 3 (2 ),5 -bisphosphate nucleotidase  go_process sulfur metabolic process|GO:0006790||IEA  go_component cellular_component|GO:0005575||ND  go_process sulfur metabolic process|GO:0006790||ISS  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437|10205895|IDA  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437||ISS  go_function 3 (2 ),5 -bisphosphate nucleotidase activity|GO:0008441|10205895|IDA  go_function 3 (2 ),5 -bisphosphate nucleotidase activity|GO:0008441||ISS  product SAL2; 3 (2 ),5 -bisphosphate nucleotidase/ inositol or phosphatidylinositol phosphatase  note SAL2; FUNCTIONS IN: 3 (2 ),5 -bisphosphate nucleotidase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: sulfur metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Inositol monophosphatase (InterPro:IPR000760), 3(2),5 -bisphosphate nucleotidase HAL2 (InterPro:IPR006239); BEST Arabidopsis thaliana protein match is: 3 (2 ),5 -bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putative (TAIR:AT5G09290.1); Has 5840 Blast hits to 5840 proteins in 1062 species: Archae - 15; Bacteria - 3020; Metazoa - 325; Fungi - 160; Plants - 127; Viruses - 0; Other Eukaryotes - 2193 (source: NCBI BLink).  protein_id AT5G64000.1p  transcript_id AT5G64000.1  protein_id AT5G64000.1p  transcript_id AT5G64000.1  
At5g64010	chr5:025619985	0.0	C/25619985-25620179,25619727-25619838,25619477-25619632,25619361-25619398,25619156-25619249,25618961-25619024,25618810-25618861	AT5G64010.1  CDS  gene_syn MBM17.11, MBM17_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 10 Blast hits to 10 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G64010.1p  transcript_id AT5G64010.1  protein_id AT5G64010.1p  transcript_id AT5G64010.1  
At5g64020	chr5:025621869	0.0	C/25621869-25622034,25621543-25621738,25620534-25621398	AT5G64020.1  CDS  gene_syn MBM17.12, MBM17_12  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37720.1); Has 697 Blast hits to 684 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 697; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G64020.1p  transcript_id AT5G64020.1  protein_id AT5G64020.1p  transcript_id AT5G64020.1  
At5g64030	chr5:025624965	0.0	W/25624965-25626050,25626130-25626279,25626497-25626767,25626909-25627019,25627100-25627274,25627366-25627638,25627760-25627954,25628029-25628257	AT5G64030.1  CDS  gene_syn MBM17.13, MBM17_13  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  product dehydration-responsive protein-related  note dehydration-responsive protein-related; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive protein-related (TAIR:AT1G29470.2); Has 70587 Blast hits to 32345 proteins in 1325 species: Archae - 209; Bacteria - 10119; Metazoa - 24829; Fungi - 6650; Plants - 2805; Viruses - 645; Other Eukaryotes - 25330 (source: NCBI BLink).  protein_id AT5G64030.1p  transcript_id AT5G64030.1  protein_id AT5G64030.1p  transcript_id AT5G64030.1  
At5g64040	chr5:025629110	0.0	C/25629110-25629409,25628906-25629031,25628690-25628809	AT5G64040.2  CDS  gene_syn MHJ24.2, MHJ24_2, PSAN, PSI-N  gene PSAN  function Encodes the only subunit of photosystem I located entirely in the thylakoid lumen. May be involved in the interaction between plastocyanin and the photosystem I complex.  go_component chloroplast|GO:0009507|18431481|IDA  go_component photosystem I|GO:0009522||TAS  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  go_component chloroplast photosystem I|GO:0030093|10631267|IPI  go_process photosynthetic electron transport in photosystem I|GO:0009773||TAS  go_function calmodulin binding|GO:0005516|11782485|IEP  go_function calmodulin binding|GO:0005516|11782485|TAS  product PSAN; calmodulin binding  note PSAN; FUNCTIONS IN: calmodulin binding; INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast thylakoid membrane, chloroplast thylakoid lumen, photosystem I, chloroplast, chloroplast photosystem I; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre subunit N (InterPro:IPR008796); Has 50 Blast hits to 50 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G64040.2p  transcript_id AT5G64040.2  protein_id AT5G64040.2p  transcript_id AT5G64040.2  
At5g64040	chr5:025629110	0.0	C/25629110-25629409,25628906-25629031,25628724-25628813	AT5G64040.1  CDS  gene_syn MHJ24.2, MHJ24_2, PSAN, PSI-N  gene PSAN  function Encodes the only subunit of photosystem I located entirely in the thylakoid lumen. May be involved in the interaction between plastocyanin and the photosystem I complex.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component photosystem I|GO:0009522||TAS  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  go_component chloroplast photosystem I|GO:0030093|10631267|IPI  go_process photosynthetic electron transport in photosystem I|GO:0009773||TAS  go_function calmodulin binding|GO:0005516|11782485|IEP  go_function calmodulin binding|GO:0005516|11782485|TAS  product PSAN; calmodulin binding  note PSAN; FUNCTIONS IN: calmodulin binding; INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre subunit N (InterPro:IPR008796); Has 50 Blast hits to 50 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G64040.1p  transcript_id AT5G64040.1  protein_id AT5G64040.1p  transcript_id AT5G64040.1  
At5g64050	chr5:025632855	0.0	C/25632855-25633099,25632663-25632781,25632459-25632580,25632191-25632373,25631959-25632077,25631826-25631874,25631616-25631717,25631412-25631514,25631261-25631324,25631019-25631133,25630798-25630898,25630525-25630681,25630196-25630429	AT5G64050.1  CDS  gene_syn ATERS, ERS, ETHYLENE RESPONSE SENSOR, GLUTAMATE TRNA SYNTHETASE, OVA3, OVULE ABORTION 3  gene ERS  function Glutamate-tRNA ligase. Targeted to mitochondria and chloroplast. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.  go_component chloroplast|GO:0009507|18431481|IDA  go_component mitochondrion|GO:0005739|16107332|IDA  go_component mitochondrion|GO:0005739|16251277|IDA  go_component chloroplast|GO:0009507|16107332|IDA  go_component chloroplast|GO:0009507|16251277|IDA  go_process glutamyl-tRNA aminoacylation|GO:0006424|16297076|ISS  go_process mitochondrion organization|GO:0007005|16107332|TAS  go_process chloroplast organization|GO:0009658|16107332|TAS  go_process tRNA aminoacylation|GO:0043039||TAS  go_process ovule development|GO:0048481|16297076|IMP  go_function glutamate-tRNA ligase activity|GO:0004818|2120226|ISS  product ERS (GLUTAMATE TRNA SYNTHETASE); glutamate-tRNA ligase  note GLUTAMATE TRNA SYNTHETASE (ERS); FUNCTIONS IN: glutamate-tRNA ligase activity; INVOLVED IN: chloroplast organization, glutamyl-tRNA aminoacylation, mitochondrion organization, tRNA aminoacylation, ovule development; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamyl/glutaminyl-tRNA synthetase, class Ic (InterPro:IPR000924), Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial (InterPro:IPR004527), Aminoacyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR008925); BEST Arabidopsis thaliana protein match is: glutamate-tRNA ligase, putative / glutamyl-tRNA synthetase, putatuve / GluRS, putative (TAIR:AT5G26710.1); Has 11355 Blast hits to 11346 proteins in 1753 species: Archae - 170; Bacteria - 5790; Metazoa - 336; Fungi - 271; Plants - 88; Viruses - 0; Other Eukaryotes - 4700 (source: NCBI BLink).  protein_id AT5G64050.1p  transcript_id AT5G64050.1  protein_id AT5G64050.1p  transcript_id AT5G64050.1  
At5g64060	chr5:025634996	0.0	C/25634996-25635152,25634625-25634902,25634116-25634544,25633818-25634024	AT5G64060.1  CDS  gene_syn Arabidopsis NAC domain containing protein 103, MHJ24.4, MHJ24_4, anac103  gene anac103  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac103 (Arabidopsis NAC domain containing protein 103); transcription factor  note Arabidopsis NAC domain containing protein 103 (anac103); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac082 (Arabidopsis NAC domain containing protein 82); transcription factor (TAIR:AT5G09330.4); Has 1529 Blast hits to 1526 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1529; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G64060.1p  transcript_id AT5G64060.1  protein_id AT5G64060.1p  transcript_id AT5G64060.1  
At5g64070	chr5:025642346	0.0	C/25642346-25643902,25641859-25642050,25641715-25641763,25641107-25641239,25640532-25640979,25640170-25640250,25639952-25640071,25639371-25639440,25639119-25639216,25638874-25638978,25638533-25638586,25638250-25638393,25638079-25638132,25637904-25637978,25637711-25637794,25637492-25637593	AT5G64070.1  CDS  gene_syn MHJ24.5, MHJ24_5, PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1, PI-4KBETA1, PI4KBETA1  gene PI-4KBETA1  function Encodes a phosphatidylinositol 4-OH kinase, PI-4Kbeta1. Arabidopsis contains 12 PI-4Ks in three separate families: PI-4Kalphs, PI-4kbeta, and PI-4Kgamma. PI-4Kbeta1 is 83% identical to PI-4kbeta2 encoded by At5g09350. Interacts with the RabA4b GTPase. Important for polarized root hair growth as the loss of this gene and its close relative PI-4kbeta2, leads to the formation of abnormal root hairs.  go_component nucleus|GO:0005634|15610358|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component membrane|GO:0016020|16567499|IDA  go_process pollen tube growth|GO:0009860|19208902|IGI  go_process phosphoinositide biosynthetic process|GO:0046489|10026194|TAS  go_process root hair cell tip growth|GO:0048768|16567499|IGI  go_function 1-phosphatidylinositol 4-kinase activity|GO:0004430|10026194|IDA  product PI-4KBETA1 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1); 1-phosphatidylinositol 4-kinase  note PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1 (PI-4KBETA1); FUNCTIONS IN: 1-phosphatidylinositol 4-kinase activity; INVOLVED IN: phosphoinositide biosynthetic process, root hair cell tip growth, pollen tube growth; LOCATED IN: cytosol, nucleus, membrane; EXPRESSED IN: root hair tip, male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3- and 4-kinase, catalytic (InterPro:IPR000403), Phosphatidylinositol Kinase (InterPro:IPR015433), Armadillo-type fold (InterPro:IPR016024), Phosphatidylinositol 3- and 4-kinase, conserved site (InterPro:IPR018936), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2); binding / inositol or phosphatidylinositol kinase/ phosphotransferase, alcohol group as acceptor (TAIR:AT5G09350.1); Has 7016 Blast hits to 5497 proteins in 319 species: Archae - 4; Bacteria - 257; Metazoa - 2863; Fungi - 871; Plants - 261; Viruses - 36; Other Eukaryotes - 2724 (source: NCBI BLink).  protein_id AT5G64070.1p  transcript_id AT5G64070.1  protein_id AT5G64070.1p  transcript_id AT5G64070.1  
At5g64080	chr5:025646272	0.0	C/25646272-25646638,25646001-25646027,25645475-25645617	AT5G64080.2  CDS  gene_syn MHJ24.6, MHJ24_6  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_process lipid transport|GO:0006869||IEA  go_function lipid binding|GO:0008289||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to plasma membrane, anchored to membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT2G13820.1); Has 728 Blast hits to 724 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 728; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G64080.2p  transcript_id AT5G64080.2  protein_id AT5G64080.2p  transcript_id AT5G64080.2  
At5g64080	chr5:025646272	0.0	C/25646272-25646638,25646001-25646027,25645475-25645629	AT5G64080.1  CDS  gene_syn MHJ24.6, MHJ24_6  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_process lipid transport|GO:0006869||IEA  go_function lipid binding|GO:0008289||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to plasma membrane, anchored to membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT2G13820.1); Has 745 Blast hits to 741 proteins in 74 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 743; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G64080.1p  transcript_id AT5G64080.1  protein_id AT5G64080.1p  transcript_id AT5G64080.1  
At5g64090	chr5:025648069	0.0	W/25648069-25649415	AT5G64090.1  CDS  gene_syn MHJ24.7, MHJ24_7  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hyccin (InterPro:IPR018619); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G21050.1); Has 266 Blast hits to 191 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 137; Fungi - 8; Plants - 30; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).  protein_id AT5G64090.1p  transcript_id AT5G64090.1  protein_id AT5G64090.1p  transcript_id AT5G64090.1  
At5g64100	chr5:025651637	0.0	C/25651637-25652062,25651335-25651494,25650824-25651233	AT5G64100.1  CDS  gene_syn MHJ24.8, MHJ24_8  go_component cell wall|GO:0005618|14595688|IDA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: cell wall; EXPRESSED IN: hypocotyl, root, callus; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT5G64110.1); Has 2534 Blast hits to 2521 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 20; Plants - 2497; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT5G64100.1p  transcript_id AT5G64100.1  protein_id AT5G64100.1p  transcript_id AT5G64100.1  
At5g64110	chr5:025655530	0.0	C/25655530-25655946,25655236-25655395,25654575-25654990	AT5G64110.1  CDS  gene_syn MHJ24.9, MHJ24_9  go_component membrane|GO:0016020|17432890|IDA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: membrane; EXPRESSED IN: shoot, shoot apex, stamen, leaf; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT5G64100.1); Has 2475 Blast hits to 2463 proteins in 135 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 11; Plants - 2453; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G64110.1p  transcript_id AT5G64110.1  protein_id AT5G64110.1p  transcript_id AT5G64110.1  
At5g64120	chr5:025660527	0.0	C/25660527-25660946,25660255-25660417,25659551-25659954	AT5G64120.1  CDS  gene_syn MHJ24.10, MHJ24_10  function encodes a cell wall bound peroxidase that is induced by hypo-osmolarity  go_component cell wall|GO:0005618|14595688|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cell wall|GO:0005618|16551688|IDA  go_process respiratory burst|GO:0045730|16551688|IDA  go_process defense response to fungus|GO:0050832|17257167|IMP  go_function peroxidase activity|GO:0004601|16551688|IDA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: peroxidase activity; INVOLVED IN: defense response to fungus, N-terminal protein myristoylation, respiratory burst; LOCATED IN: apoplast, cell wall, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT5G39580.1); Has 2729 Blast hits to 2717 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 17; Plants - 2696; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT5G64120.1p  transcript_id AT5G64120.1  protein_id AT5G64120.1p  transcript_id AT5G64120.1  
At5g64130	chr5:025665105	0.0	C/25665105-25665145,25664982-25665029,25664816-25664869,25664672-25664732,25664540-25664587	AT5G64130.2  CDS  gene_syn MHJ24.11, MHJ24_11  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G64130.2p  transcript_id AT5G64130.2  protein_id AT5G64130.2p  transcript_id AT5G64130.2  
At5g64130	chr5:025665259	0.0	C/25665259-25665339,25664982-25665167,25664816-25664869,25664672-25664732,25664547-25664587	AT5G64130.3  CDS  gene_syn MHJ24.11, MHJ24_11  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lg106-like (InterPro:IPR012482); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69510.3); Has 91 Blast hits to 91 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G64130.3p  transcript_id AT5G64130.3  protein_id AT5G64130.3p  transcript_id AT5G64130.3  
At5g64130	chr5:025665259	0.0	C/25665259-25665339,25665105-25665167,25664982-25665029,25664816-25664869,25664672-25664732,25664547-25664587	AT5G64130.1  CDS  gene_syn MHJ24.11, MHJ24_11  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lg106-like (InterPro:IPR012482); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69510.3); Has 93 Blast hits to 93 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G64130.1p  transcript_id AT5G64130.1  protein_id AT5G64130.1p  transcript_id AT5G64130.1  
At5g64140	chr5:025667529	0.0	C/25667529-25667723	AT5G64140.1  CDS  gene_syn MHJ24.12, MHJ24_12, RIBOSOMAL PROTEIN S28, RPS28  gene RPS28  function Encodes a putative ribosomal protein S28.  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product RPS28 (RIBOSOMAL PROTEIN S28); structural constituent of ribosome  note RIBOSOMAL PROTEIN S28 (RPS28); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S28e (InterPro:IPR000289); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S28 (RPS28B) (TAIR:AT5G03850.1); Has 802 Blast hits to 802 proteins in 280 species: Archae - 145; Bacteria - 0; Metazoa - 260; Fungi - 104; Plants - 121; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink).  protein_id AT5G64140.1p  transcript_id AT5G64140.1  protein_id AT5G64140.1p  transcript_id AT5G64140.1  
At5g64150	chr5:025669979	0.0	C/25669979-25670731,25669490-25669735,25668997-25669131	AT5G64150.1  CDS  gene_syn MHJ24.13, MHJ24_13  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid methylation|GO:0006479||IEA  go_process methylation|GO:0032259||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_function protein methyltransferase activity|GO:0008276||IEA  go_function catalytic activity|GO:0003824||ISS  product methylase family protein  note methylase family protein; FUNCTIONS IN: protein methyltransferase activity, methyltransferase activity, catalytic activity, nucleic acid binding; INVOLVED IN: methylation, protein amino acid methylation; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase small (InterPro:IPR007848), N-6 adenine-specific DNA methylase, conserved site (InterPro:IPR002052), Modification methylase HemK (InterPro:IPR004556); Has 6345 Blast hits to 6339 proteins in 1387 species: Archae - 69; Bacteria - 3625; Metazoa - 132; Fungi - 73; Plants - 30; Viruses - 0; Other Eukaryotes - 2416 (source: NCBI BLink).  protein_id AT5G64150.1p  transcript_id AT5G64150.1  protein_id AT5G64150.1p  transcript_id AT5G64150.1  
At5g64160	chr5:025670941	0.0	W/25670941-25671144,25671446-25671563,25671871-25672018,25672105-25672318	AT5G64160.1  CDS  gene_syn MHJ24.14, MHJ24_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 24 Blast hits to 24 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 20; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G64160.1p  transcript_id AT5G64160.1  protein_id AT5G64160.1p  transcript_id AT5G64160.1  
At5g64170	chr5:025675039	0.0	C/25675039-25675445,25674615-25674924,25673737-25674348,25673443-25673576,25673087-25673222,25672904-25673005	AT5G64170.1  CDS  gene_syn MHJ24.1, MHJ24_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product dentin sialophosphoprotein-related  note dentin sialophosphoprotein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54500.2); Has 100 Blast hits to 93 proteins in 27 species: Archae - 2; Bacteria - 14; Metazoa - 12; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT5G64170.1p  transcript_id AT5G64170.1  protein_id AT5G64170.1p  transcript_id AT5G64170.1  
At5g64170	chr5:025675911	0.0	C/25675911-25675934,25675039-25675571,25674615-25674924,25673737-25674348,25673443-25673576,25673087-25673222,25672904-25673005	AT5G64170.2  CDS  gene_syn MHJ24.1, MHJ24_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product dentin sialophosphoprotein-related  note dentin sialophosphoprotein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54500.2); Has 117 Blast hits to 104 proteins in 33 species: Archae - 2; Bacteria - 18; Metazoa - 19; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT5G64170.2p  transcript_id AT5G64170.2  protein_id AT5G64170.2p  transcript_id AT5G64170.2  
At5g64180	chr5:025677163	0.0	W/25677163-25677339,25677782-25677938,25678062-25678204	AT5G64180.1  CDS  gene_syn MSJ1.2, MSJ1_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 181 Blast hits to 181 proteins in 61 species: Archae - 0; Bacteria - 5; Metazoa - 125; Fungi - 11; Plants - 24; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT5G64180.1p  transcript_id AT5G64180.1  protein_id AT5G64180.1p  transcript_id AT5G64180.1  
At5g64190	chr5:025679432	0.0	W/25679432-25680300,25680514-25681153	AT5G64190.1  CDS  gene_syn MSJ1.3, MSJ1_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, male gametophyte, carpel, stamen, leaf; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40390.1); Has 52 Blast hits to 52 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G64190.1p  transcript_id AT5G64190.1  protein_id AT5G64190.1p  transcript_id AT5G64190.1  
At5g64200	chr5:025683478	0.0	C/25683478-25683553,25683304-25683382,25683146-25683225,25682981-25683047,25682662-25682802,25682291-25682485,25681941-25682208,25681849-25681854	AT5G64200.1  CDS  gene_syn ATSC35, MSJ1.4, MSJ1_4  gene ATSC35  function encodes an SC35-like splicing factor of 35 kD localized to the nuclear specks.  go_component membrane|GO:0016020|17432890|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_component nuclear speck|GO:0016607|15133128|IDA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|12176998|TAS  go_process RNA splicing|GO:0008380|16807317|NAS  go_function RNA binding|GO:0003723||ISS  product ATSC35; RNA binding / nucleic acid binding / nucleotide binding  note ATSC35; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: cytosol, nuclear speck, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: SCL28; RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT5G18810.1); Has 47535 Blast hits to 29225 proteins in 1106 species: Archae - 4; Bacteria - 2416; Metazoa - 27880; Fungi - 5734; Plants - 4274; Viruses - 508; Other Eukaryotes - 6719 (source: NCBI BLink).  protein_id AT5G64200.1p  transcript_id AT5G64200.1  protein_id AT5G64200.1p  transcript_id AT5G64200.1  
At5g64200	chr5:025683478	0.0	C/25683478-25683553,25683304-25683382,25683146-25683225,25682981-25683047,25682662-25682802,25682291-25682485,25681941-25682208,25681849-25681854	AT5G64200.2  CDS  gene_syn ATSC35, MSJ1.4, MSJ1_4  gene ATSC35  function encodes an SC35-like splicing factor of 35 kD localized to the nuclear specks.  go_component membrane|GO:0016020|17432890|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_component nuclear speck|GO:0016607|15133128|IDA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|12176998|TAS  go_process RNA splicing|GO:0008380|16807317|NAS  go_function RNA binding|GO:0003723||ISS  product ATSC35; RNA binding / nucleic acid binding / nucleotide binding  note ATSC35; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: cytosol, nuclear speck, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: SCL28; RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT5G18810.1); Has 47535 Blast hits to 29225 proteins in 1106 species: Archae - 4; Bacteria - 2416; Metazoa - 27880; Fungi - 5734; Plants - 4274; Viruses - 508; Other Eukaryotes - 6719 (source: NCBI BLink).  protein_id AT5G64200.2p  transcript_id AT5G64200.2  protein_id AT5G64200.2p  transcript_id AT5G64200.2  
At5g64210	chr5:025685472	0.0	C/25685472-25685664,25685194-25685384,25684977-25685105,25684267-25684755,25683965-25684024	AT5G64210.1  CDS  gene_syn ALTERNATIVE OXIDASE, AOX2, MSJ1.5, MSJ1_5  gene AOX2  function encodes an isoform of alternative oxidase, which is expressed in rosettes, stems, and roots. Transcript accumulates in dry seeds and decreased upon germination and is not affected by actinomycin A. Protein is localized to mitochondria.  go_component mitochondrion|GO:0005739|11434463|IDA  go_component mitochondrial envelope|GO:0005740|11434463|IDA  go_process alternative respiration|GO:0010230|11434463|ISS  go_process oxidation reduction|GO:0055114|9349280|TAS  go_function alternative oxidase activity|GO:0009916|11434463|ISS  go_function alternative oxidase activity|GO:0009916||ISS  product AOX2; alternative oxidase  note AOX2; FUNCTIONS IN: alternative oxidase activity; INVOLVED IN: oxidation reduction, alternative respiration; LOCATED IN: mitochondrial envelope, mitochondrion; CONTAINS InterPro DOMAIN/s: Alternative oxidase (InterPro:IPR002680); BEST Arabidopsis thaliana protein match is: AOX1A (ALTERNATIVE OXIDASE 1A); alternative oxidase (TAIR:AT3G22370.1); Has 1070 Blast hits to 1070 proteins in 176 species: Archae - 0; Bacteria - 83; Metazoa - 6; Fungi - 138; Plants - 257; Viruses - 0; Other Eukaryotes - 586 (source: NCBI BLink).  protein_id AT5G64210.1p  transcript_id AT5G64210.1  protein_id AT5G64210.1p  transcript_id AT5G64210.1  
At5g64220	chr5:025686434	0.0	W/25686434-25686473,25686782-25686901,25687164-25687279,25687433-25687521,25687927-25687969,25688121-25688253,25688395-25688517,25688601-25688860,25689039-25689545,25689826-25690514,25690692-25691274,25691358-25691681,25691778-25691903	AT5G64220.1  CDS  gene_syn MSJ1.6, MSJ1_6  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function transcription regulator activity|GO:0030528|12218065|TAS  product calmodulin-binding protein  note calmodulin-binding protein; FUNCTIONS IN: transcription regulator activity, calmodulin binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CG-1 (InterPro:IPR005559), IQ calmodulin-binding region (InterPro:IPR000048), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: EICBP.B (ETHYLENE INDUCED CALMODULIN BINDING PROTEIN); calmodulin binding / transcription activator/ transcription regulator (TAIR:AT5G09410.2); Has 12371 Blast hits to 7464 proteins in 391 species: Archae - 23; Bacteria - 619; Metazoa - 7363; Fungi - 661; Plants - 505; Viruses - 67; Other Eukaryotes - 3133 (source: NCBI BLink).  protein_id AT5G64220.1p  transcript_id AT5G64220.1  protein_id AT5G64220.1p  transcript_id AT5G64220.1  
At5g64220	chr5:025686434	0.0	W/25686434-25686473,25686782-25686901,25687164-25687279,25687433-25687521,25687927-25687969,25688121-25688253,25688395-25688517,25688601-25688860,25689039-25689545,25689826-25690514,25690692-25691274,25691358-25691681,25691778-25691903	AT5G64220.2  CDS  gene_syn MSJ1.6, MSJ1_6  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function transcription regulator activity|GO:0030528|12218065|TAS  product calmodulin-binding protein  note calmodulin-binding protein; FUNCTIONS IN: transcription regulator activity, calmodulin binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CG-1 (InterPro:IPR005559), IQ calmodulin-binding region (InterPro:IPR000048), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: EICBP.B (ETHYLENE INDUCED CALMODULIN BINDING PROTEIN); calmodulin binding / transcription activator/ transcription regulator (TAIR:AT5G09410.2); Has 12371 Blast hits to 7464 proteins in 391 species: Archae - 23; Bacteria - 619; Metazoa - 7363; Fungi - 661; Plants - 505; Viruses - 67; Other Eukaryotes - 3133 (source: NCBI BLink).  protein_id AT5G64220.2p  transcript_id AT5G64220.2  protein_id AT5G64220.2p  transcript_id AT5G64220.2  
At5g64230	chr5:025692572	0.0	W/25692572-25693364,25693563-25693909	AT5G64230.1  CDS  gene_syn MSJ1.7, MSJ1_7  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19920.1); Has 27 Blast hits to 27 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G64230.1p  transcript_id AT5G64230.1  protein_id AT5G64230.1p  transcript_id AT5G64230.1  
At5g64240	chr5:025695836	0.0	W/25695836-25696241,25696331-25696661,25696743-25696860,25696948-25697121,25697190-25697249	AT5G64240.2  CDS  gene_syn AtMC3, MSJ1.8, MSJ1_8, metacaspase 3  gene AtMC3  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  product AtMC3 (metacaspase 3); cysteine-type endopeptidase  note metacaspase 3 (AtMC3); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: AMC1 (METACASPASE 1); cysteine-type endopeptidase (TAIR:AT1G02170.1); Has 770 Blast hits to 766 proteins in 197 species: Archae - 3; Bacteria - 201; Metazoa - 0; Fungi - 196; Plants - 176; Viruses - 0; Other Eukaryotes - 194 (source: NCBI BLink).  protein_id AT5G64240.2p  transcript_id AT5G64240.2  protein_id AT5G64240.2p  transcript_id AT5G64240.2  
At5g64240	chr5:025695836	0.0	W/25695836-25696241,25696331-25696661,25696743-25696923	AT5G64240.1  CDS  gene_syn AtMC3, MSJ1.8, MSJ1_8, metacaspase 3  gene AtMC3  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  product AtMC3 (metacaspase 3); cysteine-type endopeptidase  note metacaspase 3 (AtMC3); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: AMC1 (METACASPASE 1); cysteine-type endopeptidase (TAIR:AT1G02170.1); Has 762 Blast hits to 758 proteins in 197 species: Archae - 3; Bacteria - 197; Metazoa - 0; Fungi - 196; Plants - 175; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink).  protein_id AT5G64240.1p  transcript_id AT5G64240.1  protein_id AT5G64240.1p  transcript_id AT5G64240.1  
At5g64250	chr5:025698531	0.0	C/25698531-25698752,25698217-25698458,25697909-25698128,25697623-25697820	AT5G64250.1  CDS  gene_syn MSJ1.9, MSJ1_9  go_process response to cadmium ion|GO:0046686|17075075|IEP  go_function catalytic activity|GO:0003824||IEA  go_process metabolic process|GO:0008152||ISS  go_process response to symbiotic fungus|GO:0009610|15710607|IEP  go_process response to symbiotic fungus|GO:0009610|17397506|IEP  go_function oxidoreductase activity|GO:0016491||ISS  product 2-nitropropane dioxygenase family / NPD family  note 2-nitropropane dioxygenase family / NPD family; FUNCTIONS IN: oxidoreductase activity, catalytic activity; INVOLVED IN: response to cadmium ion, response to symbiotic fungus, metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), 2-nitropropane dioxygenase, NPD (InterPro:IPR004136); Has 6764 Blast hits to 6757 proteins in 1058 species: Archae - 8; Bacteria - 3854; Metazoa - 13; Fungi - 351; Plants - 33; Viruses - 0; Other Eukaryotes - 2505 (source: NCBI BLink).  protein_id AT5G64250.1p  transcript_id AT5G64250.1  protein_id AT5G64250.1p  transcript_id AT5G64250.1  
At5g64250	chr5:025698817	0.0	C/25698817-25698945,25698531-25698743,25698217-25698458,25697909-25698128,25697623-25697820	AT5G64250.2  CDS  gene_syn MSJ1.9, MSJ1_9  go_process response to cadmium ion|GO:0046686|17075075|IEP  go_function catalytic activity|GO:0003824||IEA  go_process metabolic process|GO:0008152||ISS  go_process response to symbiotic fungus|GO:0009610|15710607|IEP  go_process response to symbiotic fungus|GO:0009610|17397506|IEP  go_function oxidoreductase activity|GO:0016491||ISS  product 2-nitropropane dioxygenase family / NPD family  note 2-nitropropane dioxygenase family / NPD family; FUNCTIONS IN: oxidoreductase activity, catalytic activity; INVOLVED IN: response to cadmium ion, response to symbiotic fungus, metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), 2-nitropropane dioxygenase, NPD (InterPro:IPR004136); Has 6940 Blast hits to 6904 proteins in 1063 species: Archae - 10; Bacteria - 3907; Metazoa - 13; Fungi - 351; Plants - 33; Viruses - 0; Other Eukaryotes - 2626 (source: NCBI BLink).  protein_id AT5G64250.2p  transcript_id AT5G64250.2  protein_id AT5G64250.2p  transcript_id AT5G64250.2  
At5g64260	chr5:025703980	0.0	W/25703980-25704897	AT5G64260.1  CDS  gene_syn EXL2, EXORDIUM LIKE 2, MSJ1_10  gene EXL2  go_component cell wall|GO:0005618|16287169|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product EXL2 (EXORDIUM LIKE 2)  note EXORDIUM LIKE 2 (EXL2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphate-induced protein 1 conserved region (InterPro:IPR006766); BEST Arabidopsis thaliana protein match is: EXL4 (EXORDIUM LIKE 4) (TAIR:AT5G09440.1); Has 233 Blast hits to 233 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 231; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G64260.1p  transcript_id AT5G64260.1  protein_id AT5G64260.1p  transcript_id AT5G64260.1  
At5g64270	chr5:025706909	0.0	W/25706909-25710718	AT5G64270.1  CDS  gene_syn MSJ1.11, MSJ1_11  go_component chloroplast|GO:0009507|15028209|IDA  go_function binding|GO:0005488||IEA  go_process mRNA processing|GO:0006397||ISS  product splicing factor, putative  note splicing factor, putative; FUNCTIONS IN: binding; INVOLVED IN: mRNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Splicing factor 3B subunit 1 (InterPro:IPR015016), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: RCN1 (ROOTS CURL IN NPA); protein phosphatase type 2A regulator (TAIR:AT1G25490.1); Has 1441 Blast hits to 1324 proteins in 270 species: Archae - 12; Bacteria - 198; Metazoa - 607; Fungi - 267; Plants - 142; Viruses - 10; Other Eukaryotes - 205 (source: NCBI BLink).  protein_id AT5G64270.1p  transcript_id AT5G64270.1  protein_id AT5G64270.1p  transcript_id AT5G64270.1  
At5g64280	chr5:025712641	0.0	C/25712641-25713411,25712196-25712509,25711559-25712007,25711330-25711445	AT5G64280.1  CDS  gene_syn DiT2.2, MSJ1.12, MSJ1_12, dicarboxylate transporter 2.2  gene DiT2.2  go_component chloroplast|GO:0009507||IEA  go_component membrane|GO:0016020||IEA  go_process sodium ion transport|GO:0006814||IEA  go_process malate transport|GO:0015743||ISS  go_function oxoglutarate:malate antiporter activity|GO:0015367||ISS  product DiT2.2 (dicarboxylate transporter 2.2); oxoglutarate:malate antiporter  note dicarboxylate transporter 2.2 (DiT2.2); FUNCTIONS IN: oxoglutarate:malate antiporter activity; INVOLVED IN: malate transport, sodium ion transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sodium/sulphate symporter (InterPro:IPR001898); BEST Arabidopsis thaliana protein match is: DIT2.1 (DICARBOXYLATE TRANSPORT 2.1); oxoglutarate:malate antiporter (TAIR:AT5G64290.1); Has 2814 Blast hits to 2813 proteins in 601 species: Archae - 43; Bacteria - 2207; Metazoa - 10; Fungi - 20; Plants - 76; Viruses - 1; Other Eukaryotes - 457 (source: NCBI BLink).  protein_id AT5G64280.1p  transcript_id AT5G64280.1  protein_id AT5G64280.1p  transcript_id AT5G64280.1  
At5g64290	chr5:025715830	0.0	C/25715830-25716642,25715235-25715548,25714701-25715149,25714495-25714610	AT5G64290.1  CDS  gene_syn DCT, DICARBOXYLATE TRANSPORT 2.1, DIT2.1, MSJ1.13, MSJ1_13  gene DIT2.1  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to nematode|GO:0009624|16478044|IEP  go_process malate transport|GO:0015743||ISS  go_function oxoglutarate:malate antiporter activity|GO:0015367||ISS  product DIT2.1 (DICARBOXYLATE TRANSPORT 2.1); oxoglutarate:malate antiporter  note DICARBOXYLATE TRANSPORT 2.1 (DIT2.1); FUNCTIONS IN: oxoglutarate:malate antiporter activity; INVOLVED IN: malate transport, response to nematode; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sodium/sulphate symporter (InterPro:IPR001898); BEST Arabidopsis thaliana protein match is: DiT2.2 (dicarboxylate transporter 2.2); oxoglutarate:malate antiporter (TAIR:AT5G64280.1); Has 2721 Blast hits to 2720 proteins in 602 species: Archae - 47; Bacteria - 2055; Metazoa - 43; Fungi - 9; Plants - 101; Viruses - 2; Other Eukaryotes - 464 (source: NCBI BLink).  protein_id AT5G64290.1p  transcript_id AT5G64290.1  protein_id AT5G64290.1p  transcript_id AT5G64290.1  
At5g64300	chr5:025718459	0.0	W/25718459-25718517,25718785-25719151,25719233-25719454,25719542-25719864,25719955-25720084,25720177-25720473,25720557-25720790	AT5G64300.1  CDS  gene_syn ATGCH, GTP CYCLOHYDROLASE II  gene ATGCH  function encodes GTP cyclohydrolase II that can functionally complement E. coli mutant deficient in this gene. It also has 3,4-dihydroxy-2-butanone-4-phosphate synthase activity which makes it a bifunctional enzyme involved in the formation of the pyrimidine and of the carbohydrate from GTP and ribulose-5-phosphate, respectively  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process riboflavin biosynthetic process|GO:0009231|10783978|IGI  go_process riboflavin biosynthetic process|GO:0009231|7642114|IGI  go_process riboflavin biosynthetic process|GO:0009231||ISS  go_function GTP cyclohydrolase II activity|GO:0003935|10783978|IGI  go_function GTP cyclohydrolase II activity|GO:0003935|7642114|IGI  go_function GTP cyclohydrolase II activity|GO:0003935||ISS  go_function 3,4-dihydroxy-2-butanone-4-phosphate synthase activity|GO:0008686|10783978|IGI  go_function 3,4-dihydroxy-2-butanone-4-phosphate synthase activity|GO:0008686||ISS  product ATGCH; 3,4-dihydroxy-2-butanone-4-phosphate synthase/ GTP cyclohydrolase II  note ATGCH; FUNCTIONS IN: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, GTP cyclohydrolase II activity; INVOLVED IN: riboflavin biosynthetic process; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP cyclohydrolase II (InterPro:IPR000926), DHBP synthase RibB (InterPro:IPR000422), DHBP synthase RibB-like alpha/beta domain (InterPro:IPR017945); BEST Arabidopsis thaliana protein match is: riboflavin biosynthesis protein, putative (TAIR:AT2G22450.1); Has 8476 Blast hits to 8476 proteins in 1312 species: Archae - 133; Bacteria - 4034; Metazoa - 0; Fungi - 273; Plants - 66; Viruses - 0; Other Eukaryotes - 3970 (source: NCBI BLink).  protein_id AT5G64300.1p  transcript_id AT5G64300.1  protein_id AT5G64300.1p  transcript_id AT5G64300.1  
At5g64310	chr5:025722018	0.0	W/25722018-25722413	AT5G64310.1  CDS  gene_syn AGP1, ARABINOGALACTAN PROTEIN 1, ARABINOGALACTAN-PROTEIN 1, ATAGP1, MSJ1.15, MSJ1_15  gene AGP1  function Encodes arabinogalactan-protein (AGP1).  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  product AGP1 (ARABINOGALACTAN PROTEIN 1)  note ARABINOGALACTAN PROTEIN 1 (AGP1); LOCATED IN: anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 17609 Blast hits to 7039 proteins in 701 species: Archae - 63; Bacteria - 3971; Metazoa - 2273; Fungi - 1082; Plants - 2373; Viruses - 926; Other Eukaryotes - 6921 (source: NCBI BLink).  protein_id AT5G64310.1p  transcript_id AT5G64310.1  protein_id AT5G64310.1p  transcript_id AT5G64310.1  
At5g64320	chr5:025723247	0.0	C/25723247-25725439	AT5G64320.1  CDS  gene_syn MSJ1.16, MSJ1_16  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G74580.1); Has 26893 Blast hits to 6152 proteins in 195 species: Archae - 3; Bacteria - 24; Metazoa - 755; Fungi - 828; Plants - 23947; Viruses - 0; Other Eukaryotes - 1336 (source: NCBI BLink).  protein_id AT5G64320.1p  transcript_id AT5G64320.1  protein_id AT5G64320.1p  transcript_id AT5G64320.1  
At5g64330	chr5:025727568	0.0	W/25727568-25727704,25727803-25727872,25727955-25728563,25728650-25729495,25729576-25729854,25729926-25730225	AT5G64330.1  CDS  gene_syn JK218, MSJ1.17, MSJ1_17, NON-PHOTOTROPIC HYPOCOTYL 3, NPH3, ROOT PHOTOTROPISM 3, RPT3  gene NPH3  function Involved in blue light response signaling pathway; interacts with the blue light photoreceptor NPH1.Null mutations abolish phototrophic responses of etiolated seedlings to low fluence blue light. Protein contains multiple protein-protein interaction domains.  go_component plasma membrane|GO:0005886||NAS  go_process response to light stimulus|GO:0009416||ISS  go_process phototropism|GO:0009638|7773019|IMP  go_process blue light signaling pathway|GO:0009785|10542152|IPI  go_process blue light signaling pathway|GO:0009785|7773019|IGI  go_function signal transducer activity|GO:0004871||ISS  go_function protein binding|GO:0005515|16777956|IPI  product NPH3 (NON-PHOTOTROPIC HYPOCOTYL 3); protein binding / signal transducer  note NON-PHOTOTROPIC HYPOCOTYL 3 (NPH3); FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: phototropism, response to light stimulus, blue light signaling pathway; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: phototropic-responsive NPH3 family protein (TAIR:AT1G30440.1); Has 601 Blast hits to 434 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 595; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G64330.1p  transcript_id AT5G64330.1  protein_id AT5G64330.1p  transcript_id AT5G64330.1  
At5g64330	chr5:025727568	0.0	W/25727568-25727704,25727803-25727872,25727955-25728563,25728650-25729510	AT5G64330.2  CDS  gene_syn JK218, MSJ1.17, MSJ1_17, NON-PHOTOTROPIC HYPOCOTYL 3, NPH3, ROOT PHOTOTROPISM 3, RPT3  gene NPH3  function Involved in blue light response signaling pathway; interacts with the blue light photoreceptor NPH1.Null mutations abolish phototrophic responses of etiolated seedlings to low fluence blue light. Protein contains multiple protein-protein interaction domains.  go_component plasma membrane|GO:0005886||NAS  go_process response to light stimulus|GO:0009416||ISS  go_process phototropism|GO:0009638|7773019|IMP  go_process blue light signaling pathway|GO:0009785|10542152|IPI  go_process blue light signaling pathway|GO:0009785|7773019|IGI  go_function signal transducer activity|GO:0004871||ISS  go_function protein binding|GO:0005515|16777956|IPI  product NPH3 (NON-PHOTOTROPIC HYPOCOTYL 3); protein binding / signal transducer  note NON-PHOTOTROPIC HYPOCOTYL 3 (NPH3); FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: phototropism, response to light stimulus, blue light signaling pathway; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: phototropic-responsive NPH3 family protein (TAIR:AT1G30440.1); Has 558 Blast hits to 409 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 555; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G64330.2p  transcript_id AT5G64330.2  protein_id AT5G64330.2p  transcript_id AT5G64330.2  
At5g64340	chr5:025730890	0.0	C/25730890-25731936	AT5G64340.1  CDS  gene_syn MSJ1.18, MSJ1_18, SAC51, SUPPRESSOR OF ACAULIS 51  gene SAC51  function Encodes a bHLH(basic helix-loop-helix)-type transcription factor SAC51 [suppressor of acaulis 51]. Upregulation of SAC51 reverses the dwarf phenotype caused by a loss-of-function mutation in ACL5 (Arabidopsis thaliana ACAULIS 5) gene, suggesting that activation of SAC51 may lead to the expression of a subset of genes required for stem elongation.  go_component nucleus|GO:0005634||IEA  go_process unidimensional cell growth|GO:0009826|16936072|IMP  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription regulator activity|GO:0030528|12897250|TAS  product SAC51 (SUPPRESSOR OF ACAULIS 51); transcription factor/ transcription regulator  note SUPPRESSOR OF ACAULIS 51 (SAC51); FUNCTIONS IN: transcription factor activity, transcription regulator activity; INVOLVED IN: unidimensional cell growth; LOCATED IN: nucleus; EXPRESSED IN: shoot, flower, root, leaf; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092); BEST Arabidopsis thaliana protein match is: transcription factor/ transcription regulator (TAIR:AT5G09460.1); Has 97 Blast hits to 97 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 4; Plants - 82; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G64340.1p  transcript_id AT5G64340.1  protein_id AT5G64340.1p  transcript_id AT5G64340.1  
At5g64341	chr5:025732328	0.0	C/25732328-25732450,25732191-25732229	AT5G64341.1  CDS  gene_syn CPuORF40, Conserved peptide upstream open reading frame 40  gene CPuORF40  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF40 represents a conserved upstream opening reading frame relative to major ORF AT5G64340.1  product CPuORF40 (Conserved peptide upstream open reading frame 40)  note Conserved peptide upstream open reading frame 40 (CPuORF40); BEST Arabidopsis thaliana protein match is: CPuORF43 (Conserved peptide upstream open reading frame 43) (TAIR:AT5G09461.1); Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G64341.1p  transcript_id AT5G64341.1  protein_id AT5G64341.1p  transcript_id AT5G64341.1  
At5g64342	chr5:025732543	0.0	C/25732543-25732593	AT5G64342.1  CDS  gene_syn CPuORF39, Conserved peptide upstream open reading frame 39  gene CPuORF39  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF39 represents a conserved upstream opening reading frame relative to major ORF AT5G64340.1  product CPuORF39 (Conserved peptide upstream open reading frame 39)  note Conserved peptide upstream open reading frame 39 (CPuORF39); Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G64342.1p  transcript_id AT5G64342.1  protein_id AT5G64342.1p  transcript_id AT5G64342.1  
At5g64343	chr5:025732691	0.0	C/25732691-25732753	AT5G64343.1  CDS  gene_syn CPuORF38, Conserved peptide upstream open reading frame 38  gene CPuORF38  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF38 represents a conserved upstream opening reading frame relative to major ORF AT5G64340.1  product CPuORF38 (Conserved peptide upstream open reading frame 38)  note Conserved peptide upstream open reading frame 38 (CPuORF38); Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G64343.1p  transcript_id AT5G64343.1  protein_id AT5G64343.1p  transcript_id AT5G64343.1  
At5g64350	chr5:025735903	0.0	C/25735903-25735990,25735470-25735503,25735227-25735288,25735061-25735113,25734810-25734911	AT5G64350.1  CDS  gene_syn ATFKBP12, FK506-BINDING PROTEIN, FKBP12, IMMUNOPHILIN, MSJ1.19, MSJ1_19  gene FKBP12  go_process protein folding|GO:0006457||IEA  go_component chloroplast thylakoid lumen|GO:0009543||ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  go_function FK506 binding|GO:0005528||ISS  product FKBP12 (FK506-BINDING PROTEIN); FK506 binding / peptidyl-prolyl cis-trans isomerase  note FK506-BINDING PROTEIN (FKBP12); FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: chloroplast thylakoid lumen; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: immunophilin-related / FKBP-type peptidyl-prolyl cis-trans isomerase-related (TAIR:AT4G25340.1); Has 5723 Blast hits to 5615 proteins in 1032 species: Archae - 25; Bacteria - 2709; Metazoa - 1179; Fungi - 351; Plants - 350; Viruses - 0; Other Eukaryotes - 1109 (source: NCBI BLink).  protein_id AT5G64350.1p  transcript_id AT5G64350.1  protein_id AT5G64350.1p  transcript_id AT5G64350.1  
At5g64360	chr5:025737208	0.0	C/25737208-25738602	AT5G64360.2  CDS  gene_syn MSJ1.20, MSJ1_20  go_function heat shock protein binding|GO:0031072||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT5G09540.1); Has 1613 Blast hits to 1606 proteins in 464 species: Archae - 35; Bacteria - 630; Metazoa - 430; Fungi - 74; Plants - 291; Viruses - 0; Other Eukaryotes - 153 (source: NCBI BLink).  protein_id AT5G64360.2p  transcript_id AT5G64360.2  protein_id AT5G64360.2p  transcript_id AT5G64360.2  
At5g64360	chr5:025737208	0.0	C/25737208-25738602	AT5G64360.3  CDS  gene_syn MSJ1.20, MSJ1_20  go_function heat shock protein binding|GO:0031072||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT5G09540.1); Has 1613 Blast hits to 1606 proteins in 464 species: Archae - 35; Bacteria - 630; Metazoa - 430; Fungi - 74; Plants - 291; Viruses - 0; Other Eukaryotes - 153 (source: NCBI BLink).  protein_id AT5G64360.3p  transcript_id AT5G64360.3  protein_id AT5G64360.3p  transcript_id AT5G64360.3  
At5g64360	chr5:025737208	0.0	C/25737208-25738602	AT5G64360.4  CDS  gene_syn MSJ1.20, MSJ1_20  go_function heat shock protein binding|GO:0031072||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT5G09540.1); Has 1613 Blast hits to 1606 proteins in 464 species: Archae - 35; Bacteria - 630; Metazoa - 430; Fungi - 74; Plants - 291; Viruses - 0; Other Eukaryotes - 153 (source: NCBI BLink).  protein_id AT5G64360.4p  transcript_id AT5G64360.4  protein_id AT5G64360.4p  transcript_id AT5G64360.4  
At5g64360	chr5:025737735	0.0	C/25737735-25738602,25737208-25737608	AT5G64360.1  CDS  gene_syn MSJ1.20, MSJ1_20  go_function heat shock protein binding|GO:0031072||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT5G09540.1); Has 1614 Blast hits to 1607 proteins in 464 species: Archae - 35; Bacteria - 630; Metazoa - 430; Fungi - 74; Plants - 292; Viruses - 0; Other Eukaryotes - 153 (source: NCBI BLink).  protein_id AT5G64360.1p  transcript_id AT5G64360.1  protein_id AT5G64360.1p  transcript_id AT5G64360.1  
At5g64370	chr5:025739264	0.0	W/25739264-25739374,25739556-25739663,25739759-25739947,25740042-25740269,25740348-25740572,25740666-25741031	AT5G64370.1  CDS  gene_syn BETA-UP, MSJ1.21, MSJ1_21, beta-ureidopropionase  gene BETA-UP  function PYD3 encodes a beta-ureidopropionase which, when expressed in E. coli, has been shown to convert beta-ureidopropionate into beta-alanine.  go_process nitrogen compound metabolic process|GO:0006807||IEA  go_component cellular_component|GO:0005575||ND  go_process nitrogen compound metabolic process|GO:0006807||ISS  go_function beta-ureidopropionase activity|GO:0003837|11161056|IDA  go_function beta-ureidopropionase activity|GO:0003837||ISS  product BETA-UP (beta-ureidopropionase); beta-ureidopropionase  note beta-ureidopropionase (BETA-UP); FUNCTIONS IN: beta-ureidopropionase activity; INVOLVED IN: nitrogen compound metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (InterPro:IPR003010); BEST Arabidopsis thaliana protein match is: NLP1 (NITRILASE-LIKE PROTEIN 1); N-carbamoylputrescine amidase/ hydrolase, acting on carbon-nitrogen (but not peptide) bonds (TAIR:AT2G27450.2); Has 4417 Blast hits to 4390 proteins in 975 species: Archae - 103; Bacteria - 2445; Metazoa - 342; Fungi - 185; Plants - 184; Viruses - 11; Other Eukaryotes - 1147 (source: NCBI BLink).  protein_id AT5G64370.1p  transcript_id AT5G64370.1  protein_id AT5G64370.1p  transcript_id AT5G64370.1  
At5g64380	chr5:025741342	0.0	W/25741342-25741570,25741856-25742043,25742122-25742518,25742624-25743024	AT5G64380.1  CDS  gene_syn MSJ1.22, MSJ1_22  go_component chloroplast|GO:0009507|18431481|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function phosphoric ester hydrolase activity|GO:0042578||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function phosphoric ester hydrolase activity|GO:0042578||ISS  product fructose-1,6-bisphosphatase family protein  note fructose-1,6-bisphosphatase family protein; FUNCTIONS IN: phosphoric ester hydrolase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inositol monophosphatase/Fructose-1,6-bisphosphatase (InterPro:IPR017955), Fructose-1,6-bisphosphatase (InterPro:IPR000146); BEST Arabidopsis thaliana protein match is: fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative (TAIR:AT3G54050.1); Has 2310 Blast hits to 2308 proteins in 803 species: Archae - 28; Bacteria - 1223; Metazoa - 325; Fungi - 104; Plants - 207; Viruses - 0; Other Eukaryotes - 423 (source: NCBI BLink).  protein_id AT5G64380.1p  transcript_id AT5G64380.1  protein_id AT5G64380.1p  transcript_id AT5G64380.1  
At5g64390	chr5:025743442	0.0	W/25743442-25744047,25744195-25745103,25745206-25745475,25745816-25746250,25746403-25746479,25746565-25746676,25747216-25747380	AT5G64390.1  CDS  gene_syn HEN4, HUA ENHANCER 4, MSJ1.23, MSJ1_23  gene HEN4  function encodes a K homology (KH) domain-containing, putative RNA binding protein that interacts with HUA1, a CCCH zinc finger RNA binding protein in the nucleus. HEN4 acts redundantly with HUA1 and HUA2 in the specification of floral organ identity in the third whorl.  go_component nucleus|GO:0005634|12530963|IDA  go_process mRNA processing|GO:0006397|12530963|TAS  go_process specification of floral organ identity|GO:0010093|12530963|IMP  go_function nucleic acid binding|GO:0003676||ISS  go_function RNA binding|GO:0003723|12530963|ISS  product HEN4 (HUA ENHANCER 4); RNA binding / nucleic acid binding  note HUA ENHANCER 4 (HEN4); FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: mRNA processing, specification of floral organ identity; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT5G09560.1); Has 5267 Blast hits to 2024 proteins in 148 species: Archae - 3; Bacteria - 0; Metazoa - 3936; Fungi - 458; Plants - 718; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).  protein_id AT5G64390.1p  transcript_id AT5G64390.1  protein_id AT5G64390.1p  transcript_id AT5G64390.1  
At5g64390	chr5:025743442	0.0	W/25743442-25744047,25744195-25745103,25745206-25745475,25745816-25746250,25746403-25746479,25746565-25746742	AT5G64390.2  CDS  gene_syn HEN4, HUA ENHANCER 4, MSJ1.23, MSJ1_23  gene HEN4  function encodes a K homology (KH) domain-containing, putative RNA binding protein that interacts with HUA1, a CCCH zinc finger RNA binding protein in the nucleus. HEN4 acts redundantly with HUA1 and HUA2 in the specification of floral organ identity in the third whorl.  go_component nucleus|GO:0005634|12530963|IDA  go_process mRNA processing|GO:0006397|12530963|TAS  go_process specification of floral organ identity|GO:0010093|12530963|IMP  go_function nucleic acid binding|GO:0003676||ISS  go_function RNA binding|GO:0003723|12530963|ISS  product HEN4 (HUA ENHANCER 4); RNA binding / nucleic acid binding  note HUA ENHANCER 4 (HEN4); FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: mRNA processing, specification of floral organ identity; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT5G09560.1); Has 4506 Blast hits to 1895 proteins in 147 species: Archae - 3; Bacteria - 0; Metazoa - 3270; Fungi - 428; Plants - 672; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).  protein_id AT5G64390.2p  transcript_id AT5G64390.2  protein_id AT5G64390.2p  transcript_id AT5G64390.2  
At5g64395	chr5:025748202	0.0	C/25748202-25748297	AT5G64395.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G64395.1p  transcript_id AT5G64395.1  protein_id AT5G64395.1p  transcript_id AT5G64395.1  
At5g64400	chr5:025748922	0.0	W/25748922-25748943,25749244-25749300,25749415-25749501,25749625-25749794,25750084-25750182	AT5G64400.1  CDS  gene_syn MSJ1.24, MSJ1_24  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09570.1); Has 218 Blast hits to 216 proteins in 80 species: Archae - 0; Bacteria - 10; Metazoa - 66; Fungi - 60; Plants - 47; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT5G64400.1p  transcript_id AT5G64400.1  protein_id AT5G64400.1p  transcript_id AT5G64400.1  
At5g64400	chr5:025748922	0.0	W/25748922-25748943,25749244-25749300,25749415-25749501,25749625-25749947	AT5G64400.2  CDS  gene_syn MSJ1.24, MSJ1_24  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09570.1); Has 102 Blast hits to 100 proteins in 33 species: Archae - 0; Bacteria - 9; Metazoa - 16; Fungi - 2; Plants - 47; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT5G64400.2p  transcript_id AT5G64400.2  protein_id AT5G64400.2p  transcript_id AT5G64400.2  
At5g64401	chr5:025750441	0.0	C/25750441-25750602	AT5G64401.1  CDS  go_component mitochondrion|GO:0005739||IEA  product unknown protein  note unknown protein; LOCATED IN: mitochondrion; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G64401.1p  transcript_id AT5G64401.1  protein_id AT5G64401.1p  transcript_id AT5G64401.1  
At5g64410	chr5:025754498	0.0	C/25754498-25754974,25753938-25754035,25752160-25752723,25751801-25752053,25750921-25751718	AT5G64410.1  CDS  gene_syn ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, ATOPT4, MSJ1.25, MSJ1_25, OLIGOPEPTIDE TRANSPORTER 4, OPT4  gene OPT4  function oligopeptide transporter  go_component membrane|GO:0016020|11788749|ISS  go_process oligopeptide transport|GO:0006857|11788749|IGI  go_function oligopeptide transporter activity|GO:0015198|11788749|IGI  go_function oligopeptide transporter activity|GO:0015198||ISS  product OPT4 (OLIGOPEPTIDE TRANSPORTER 4); oligopeptide transporter  note OLIGOPEPTIDE TRANSPORTER 4 (OPT4); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetrapeptide transporter, OPT1/isp4 (InterPro:IPR004648), Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: ATOPT2; oligopeptide transporter (TAIR:AT1G09930.1); Has 747 Blast hits to 732 proteins in 75 species: Archae - 0; Bacteria - 20; Metazoa - 0; Fungi - 534; Plants - 187; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G64410.1p  transcript_id AT5G64410.1  protein_id AT5G64410.1p  transcript_id AT5G64410.1  
At5g64420	chr5:025756416	0.0	W/25756416-25757021,25757122-25757247,25757330-25757527,25757620-25757847,25757992-25759158,25759266-25759553,25759719-25760172,25760269-25761122	AT5G64420.1  CDS  gene_syn MSJ1.26, MSJ1_26  go_process transcription|GO:0006350||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed DNA polymerase activity|GO:0003887||IEA  go_component cellular_component|GO:0005575||ND  go_process DNA replication|GO:0006260||ISS  product DNA polymerase V family  note DNA polymerase V family; FUNCTIONS IN: DNA-directed DNA polymerase activity, DNA binding; INVOLVED IN: DNA replication, transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase V (InterPro:IPR007015); Has 2876 Blast hits to 1503 proteins in 203 species: Archae - 0; Bacteria - 276; Metazoa - 1312; Fungi - 350; Plants - 103; Viruses - 88; Other Eukaryotes - 747 (source: NCBI BLink).  protein_id AT5G64420.1p  transcript_id AT5G64420.1  protein_id AT5G64420.1p  transcript_id AT5G64420.1  
At5g64430	chr5:025762540	0.0	C/25762540-25764081	AT5G64430.1  CDS  gene_syn T12B11.2, T12B11_2  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product octicosapeptide/Phox/Bem1p (PB1) domain-containing protein  note octicosapeptide/Phox/Bem1p (PB1) domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (TAIR:AT5G09620.1); Has 10197 Blast hits to 7265 proteins in 506 species: Archae - 4; Bacteria - 634; Metazoa - 4503; Fungi - 1666; Plants - 2043; Viruses - 238; Other Eukaryotes - 1109 (source: NCBI BLink).  protein_id AT5G64430.1p  transcript_id AT5G64430.1  protein_id AT5G64430.1p  transcript_id AT5G64430.1  
At5g64440	chr5:025766229	0.0	W/25766229-25766307,25766400-25766509,25766604-25766664,25766808-25766998,25767075-25767204,25767357-25767434,25767511-25767658,25767793-25767905,25767984-25768059,25768207-25768278,25768421-25768472,25768719-25768799,25768885-25768968,25769053-25769156,25769235-25769327,25769424-25769492,25769623-25769687,25769785-25769846,25769986-25770081,25770201-25770260	AT5G64440.1  CDS  gene_syn Arabidopsis thaliana fatty acid amide hydrolase, AtFAAH  gene AtFAAH  function AtFAAH (fatty acid amide hydrolase) modulates endogenous NAEs (N-Acylethanolamines) levels in plants by hydrolyzing NAEs to ethanolamine and their corresponding free fatty acids. NAE depletion likely participates in the regulation of plant growth.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component plasma membrane|GO:0005886|18643971|IDA  go_process defense response to bacterium|GO:0042742|18643971|IMP  go_function amidase activity|GO:0004040||ISS  go_function N-(long-chain-acyl)ethanolamine deacylase activity|GO:0047412|16880402|IMP  product AtFAAH (Arabidopsis thaliana fatty acid amide hydrolase); N-(long-chain-acyl)ethanolamine deacylase/ amidase  note Arabidopsis thaliana fatty acid amide hydrolase (AtFAAH); FUNCTIONS IN: N-(long-chain-acyl)ethanolamine deacylase activity, amidase activity; INVOLVED IN: defense response to bacterium; LOCATED IN: endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Amidase signature enzyme (InterPro:IPR000120); BEST Arabidopsis thaliana protein match is: glutamyl-tRNA(Gln) amidotransferase, putative (TAIR:AT3G25660.1); Has 15192 Blast hits to 14943 proteins in 1432 species: Archae - 143; Bacteria - 6322; Metazoa - 525; Fungi - 887; Plants - 217; Viruses - 0; Other Eukaryotes - 7098 (source: NCBI BLink).  protein_id AT5G64440.1p  transcript_id AT5G64440.1  protein_id AT5G64440.1p  transcript_id AT5G64440.1  
At5g64450	chr5:025771949	0.0	W/25771949-25772027,25772199-25772330,25772427-25772761	AT5G64450.1  CDS  gene_syn T12B11.4, T12B11_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, sperm cell, carpel, stamen, leaf; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62200.1); Has 29 Blast hits to 29 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G64450.1p  transcript_id AT5G64450.1  protein_id AT5G64450.1p  transcript_id AT5G64450.1  
At5g64460	chr5:025774668	0.0	C/25774668-25774672,25774264-25774426,25773948-25774022,25773711-25773799,25773324-25773443,25773211-25773255,25773009-25773117	AT5G64460.5  CDS  gene_syn T12B11.5, T12B11_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078); BEST Arabidopsis thaliana protein match is: phosphoglycerate/bisphosphoglycerate mutase family protein (TAIR:AT2G17280.2); Has 157 Blast hits to 157 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 62; Plants - 57; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT5G64460.5p  transcript_id AT5G64460.5  protein_id AT5G64460.5p  transcript_id AT5G64460.5  
At5g64460	chr5:025774821	0.0	C/25774821-25774871,25774668-25774747,25774264-25774426,25773948-25774022,25773711-25773799,25773324-25773443,25773211-25773255,25773009-25773117	AT5G64460.7  CDS  gene_syn T12B11.5, T12B11_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G58280.3); Has 257 Blast hits to 254 proteins in 64 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 127; Plants - 64; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT5G64460.7p  transcript_id AT5G64460.7  protein_id AT5G64460.7p  transcript_id AT5G64460.7  
At5g64460	chr5:025775045	0.0	C/25775045-25775104,25774821-25774928,25774668-25774747,25774264-25774426,25773948-25774022,25773711-25773799,25773324-25773443,25773211-25773255,25773009-25773117	AT5G64460.1  CDS  gene_syn T12B11.5, T12B11_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G58280.3); Has 385 Blast hits to 382 proteins in 84 species: Archae - 0; Bacteria - 19; Metazoa - 2; Fungi - 201; Plants - 67; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT5G64460.1p  transcript_id AT5G64460.1  protein_id AT5G64460.1p  transcript_id AT5G64460.1  
At5g64460	chr5:025775045	0.0	C/25775045-25775104,25774821-25774928,25774668-25774747,25774264-25774426,25773948-25774022,25773711-25773799,25773324-25773443,25773211-25773255,25773009-25773117	AT5G64460.2  CDS  gene_syn T12B11.5, T12B11_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G58280.3); Has 385 Blast hits to 382 proteins in 84 species: Archae - 0; Bacteria - 19; Metazoa - 2; Fungi - 201; Plants - 67; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT5G64460.2p  transcript_id AT5G64460.2  protein_id AT5G64460.2p  transcript_id AT5G64460.2  
At5g64460	chr5:025775045	0.0	C/25775045-25775104,25774821-25774928,25774668-25774747,25774264-25774426,25773948-25774022,25773711-25773799,25773324-25773443,25773211-25773255,25773009-25773117	AT5G64460.3  CDS  gene_syn T12B11.5, T12B11_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G58280.3); Has 385 Blast hits to 382 proteins in 84 species: Archae - 0; Bacteria - 19; Metazoa - 2; Fungi - 201; Plants - 67; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT5G64460.3p  transcript_id AT5G64460.3  protein_id AT5G64460.3p  transcript_id AT5G64460.3  
At5g64460	chr5:025775045	0.0	C/25775045-25775104,25774821-25774928,25774668-25774747,25774264-25774426,25773948-25774022,25773711-25773799,25773324-25773443,25773211-25773255,25773009-25773117	AT5G64460.4  CDS  gene_syn T12B11.5, T12B11_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G58280.3); Has 385 Blast hits to 382 proteins in 84 species: Archae - 0; Bacteria - 19; Metazoa - 2; Fungi - 201; Plants - 67; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT5G64460.4p  transcript_id AT5G64460.4  protein_id AT5G64460.4p  transcript_id AT5G64460.4  
At5g64460	chr5:025775045	0.0	C/25775045-25775104,25774821-25774928,25774668-25774747,25774264-25774426,25773948-25774022,25773711-25773799,25773324-25773443,25773211-25773255,25773009-25773117	AT5G64460.6  CDS  gene_syn T12B11.5, T12B11_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G58280.3); Has 385 Blast hits to 382 proteins in 84 species: Archae - 0; Bacteria - 19; Metazoa - 2; Fungi - 201; Plants - 67; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT5G64460.6p  transcript_id AT5G64460.6  protein_id AT5G64460.6p  transcript_id AT5G64460.6  
At5g64470	chr5:025776026	0.0	W/25776026-25776579,25776814-25776951,25777051-25777300,25777435-25777716	AT5G64470.2  CDS  gene_syn T12B11.6, T12B11_6  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14530.1); Has 703 Blast hits to 692 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 701; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G64470.2p  transcript_id AT5G64470.2  protein_id AT5G64470.2p  transcript_id AT5G64470.2  
At5g64470	chr5:025776026	0.0	W/25776026-25776579,25776814-25776951,25777051-25777300,25777458-25777493	AT5G64470.1  CDS  gene_syn T12B11.6, T12B11_6  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14530.1); Has 673 Blast hits to 666 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 673; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G64470.1p  transcript_id AT5G64470.1  protein_id AT5G64470.1p  transcript_id AT5G64470.1  
At5g64480	chr5:025778202	0.0	W/25778202-25778756	AT5G64480.1  CDS  gene_syn T12B11.7, T12B11_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G64480.1p  transcript_id AT5G64480.1  protein_id AT5G64480.1p  transcript_id AT5G64480.1  
At5g64490	chr5:025779676	0.0	C/25779676-25780239	AT5G64490.1  CDS  gene_syn T12B11.8, T12B11_8  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: APUM22 (Arabidopsis Pumilio 22); RNA binding / binding (TAIR:AT1G01410.1); Has 18 Blast hits to 18 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G64490.1p  transcript_id AT5G64490.1  protein_id AT5G64490.1p  transcript_id AT5G64490.1  
At5g64500	chr5:025780511	0.0	W/25780511-25780620,25780873-25781004,25781131-25781232,25781346-25781450,25781538-25781613,25781737-25781811,25781922-25782024,25782106-25782240,25782331-25782407,25782487-25782600,25782728-25782847,25782924-25783052,25783205-25783283,25783377-25783474	AT5G64500.1  CDS  gene_syn T12B11.9, T12B11_9  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product membrane protein-related  note membrane protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: transporter-related (TAIR:AT2G22730.1); Has 8955 Blast hits to 8930 proteins in 1105 species: Archae - 134; Bacteria - 6267; Metazoa - 491; Fungi - 956; Plants - 74; Viruses - 0; Other Eukaryotes - 1033 (source: NCBI BLink).  protein_id AT5G64500.1p  transcript_id AT5G64500.1  protein_id AT5G64500.1p  transcript_id AT5G64500.1  
At5g64501	chr5:025783802	0.0	C/25783802-25783999	AT5G64501.1  pseudogenic_transcript  pseudo  function unknown pseudogene  
At5g64505	chr5:025784115	0.0	W/25784115-25784188	AT5G64505.1  tRNA  gene_syn 67918.TRNA-VAL-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Val (anticodon: AAC)  transcript_id AT5G64505.1  
At5g64510	chr5:025784592	0.0	W/25784592-25784714,25784922-25785269,25785349-25786152	AT5G64510.1  CDS  gene_syn MUB3.3, MUB3_3  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; Has 33 Blast hits to 33 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G64510.1p  transcript_id AT5G64510.1  protein_id AT5G64510.1p  transcript_id AT5G64510.1  
At5g64520	chr5:025788069	0.0	W/25788069-25788402,25788547-25788716,25788796-25788881,25789161-25789223,25789426-25789563,25789652-25789738,25789875-25789884	AT5G64520.3  CDS  gene_syn MUB3.4, MUB3_4, XRCC2  gene XRCC2  function Encodes a protein of the XRCC2 family involved in DNA repair. atxrcc2-1 Mutants are sensitive to MitomycinC but do not show fertility defects.  go_component cellular_component|GO:0005575||ND  go_process double-strand break repair via homologous recombination|GO:0000724|15686518|IMP  go_process reciprocal meiotic recombination|GO:0007131|14726957|IMP  go_function molecular_function|GO:0003674||ND  product XRCC2  note XRCC2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: reciprocal meiotic recombination, double-strand break repair via homologous recombination; LOCATED IN: cellular_component unknown; Has 136 Blast hits to 136 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 26; Plants - 13; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G64520.3p  transcript_id AT5G64520.3  protein_id AT5G64520.3p  transcript_id AT5G64520.3  
At5g64520	chr5:025788069	0.0	W/25788069-25788402,25788547-25788716,25788814-25788881,25789161-25789223,25789426-25789563,25789648-25789738,25789875-25789911,25789987-25790090,25790219-25790242	AT5G64520.2  CDS  gene_syn MUB3.4, MUB3_4, XRCC2  gene XRCC2  function Encodes a protein of the XRCC2 family involved in DNA repair. atxrcc2-1 Mutants are sensitive to MitomycinC but do not show fertility defects.  go_component cellular_component|GO:0005575||ND  go_process double-strand break repair via homologous recombination|GO:0000724|15686518|IMP  go_process reciprocal meiotic recombination|GO:0007131|14726957|IMP  go_function molecular_function|GO:0003674||ND  product XRCC2  note XRCC2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: reciprocal meiotic recombination, double-strand break repair via homologous recombination; LOCATED IN: cellular_component unknown; Has 158 Blast hits to 157 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 26; Plants - 18; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G64520.2p  transcript_id AT5G64520.2  protein_id AT5G64520.2p  transcript_id AT5G64520.2  
At5g64520	chr5:025788069	0.0	W/25788069-25788402,25788547-25788716,25788814-25788881,25789161-25789223,25789426-25789563,25789648-25789738,25789875-25789911,25789987-25790204	AT5G64520.1  CDS  gene_syn MUB3.4, MUB3_4, XRCC2  gene XRCC2  function Encodes a protein of the XRCC2 family involved in DNA repair. atxrcc2-1 Mutants are sensitive to MitomycinC but do not show fertility defects.  go_component cellular_component|GO:0005575||ND  go_process double-strand break repair via homologous recombination|GO:0000724|15686518|IMP  go_process reciprocal meiotic recombination|GO:0007131|14726957|IMP  go_function molecular_function|GO:0003674||ND  product XRCC2  note XRCC2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: reciprocal meiotic recombination, double-strand break repair via homologous recombination; LOCATED IN: cellular_component unknown; Has 158 Blast hits to 157 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 26; Plants - 18; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G64520.1p  transcript_id AT5G64520.1  protein_id AT5G64520.1p  transcript_id AT5G64520.1  
At5g64530	chr5:025795360	0.0	W/25795360-25795507,25796137-25796414,25796562-25796699	AT5G64530.1  CDS  gene_syn ANAC104, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 104, MUB3.5, MUB3_5, XND1  gene XND1  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_process xylem histogenesis|GO:0010089|18069942|IMP  go_process programmed cell death|GO:0012501|18069942|IMP  go_process shoot development|GO:0048367|18069942|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product XND1; transcription factor  note XND1; FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, shoot development, xylem histogenesis, programmed cell death; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ATNAC2 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 2); transcription factor (TAIR:AT3G15510.1); Has 1476 Blast hits to 1474 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1476; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G64530.1p  transcript_id AT5G64530.1  protein_id AT5G64530.1p  transcript_id AT5G64530.1  
At5g64540	chr5:025800232	0.0	C/25800232-25800651,25799807-25799881,25799590-25799715,25798850-25799503	AT5G64540.1  CDS  gene_syn MUB3.6, MUB3_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2063 Blast hits to 1005 proteins in 152 species: Archae - 6; Bacteria - 108; Metazoa - 926; Fungi - 253; Plants - 41; Viruses - 20; Other Eukaryotes - 709 (source: NCBI BLink).  protein_id AT5G64540.1p  transcript_id AT5G64540.1  protein_id AT5G64540.1p  transcript_id AT5G64540.1  
At5g64540	chr5:025800232	0.0	C/25800232-25800651,25799807-25799881,25799590-25799715,25798850-25799503	AT5G64540.2  CDS  gene_syn MUB3.6, MUB3_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2063 Blast hits to 1005 proteins in 152 species: Archae - 6; Bacteria - 108; Metazoa - 926; Fungi - 253; Plants - 41; Viruses - 20; Other Eukaryotes - 709 (source: NCBI BLink).  protein_id AT5G64540.2p  transcript_id AT5G64540.2  protein_id AT5G64540.2p  transcript_id AT5G64540.2  
At5g64540	chr5:025800232	0.0	C/25800232-25800651,25799807-25799881,25799590-25799715,25798850-25799503	AT5G64540.3  CDS  gene_syn MUB3.6, MUB3_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT5G64540.3p  transcript_id AT5G64540.3  protein_id AT5G64540.3p  transcript_id AT5G64540.3  
At5g64541	chr5:025801314	0.0	W/25801314-25801451	AT5G64541.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G64541.1p  transcript_id AT5G64541.1  protein_id AT5G64541.1p  transcript_id AT5G64541.1  
At5g64550	chr5:025801794	0.0	C/25801794-25803698	AT5G64550.1  CDS  gene_syn MUB3.7, MUB3_7  go_function molecular_function|GO:0003674||ND  product loricrin-related  note loricrin-related; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: loricrin-related (TAIR:AT5G09670.2); Has 1905 Blast hits to 1174 proteins in 134 species: Archae - 0; Bacteria - 74; Metazoa - 1184; Fungi - 27; Plants - 318; Viruses - 5; Other Eukaryotes - 297 (source: NCBI BLink).  protein_id AT5G64550.1p  transcript_id AT5G64550.1  protein_id AT5G64550.1p  transcript_id AT5G64550.1  
At5g64552	chr5:025803780	0.0	C/25803780-25803854	AT5G64552.1  CDS  gene_syn CPuORF22, Conserved peptide upstream open reading frame 22  gene CPuORF22  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF22 represents a conserved upstream opening reading frame relative to major ORF AT5G64550.1  product CPuORF22 (Conserved peptide upstream open reading frame 22)  note Conserved peptide upstream open reading frame 22 (CPuORF22); Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G64552.1p  transcript_id AT5G64552.1  protein_id AT5G64552.1p  transcript_id AT5G64552.1  
At5g64560	chr5:025809150	0.0	C/25809150-25809395,25809023-25809052,25808503-25808659,25808255-25808376,25808110-25808184,25807792-25808019,25807653-25807697,25807525-25807569,25807396-25807425,25807163-25807321	AT5G64560.2  CDS  gene_syn MUB3.8, MUB3_8  go_component membrane|GO:0016020||IEA  go_process metal ion transport|GO:0030001||IEA  go_function metal ion transmembrane transporter activity|GO:0046873||IEA  go_component membrane|GO:0016020||ISS  go_process metal ion transport|GO:0030001||ISS  go_function metal ion transmembrane transporter activity|GO:0046873||ISS  product magnesium transporter CorA-like family protein (MRS2-2)  note magnesium transporter CorA-like family protein (MRS2-2); FUNCTIONS IN: metal ion transmembrane transporter activity; INVOLVED IN: metal ion transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mg2+ transporter protein, CorA-like (InterPro:IPR002523); BEST Arabidopsis thaliana protein match is: magnesium transporter CorA-like family protein (MRS2-7) (TAIR:AT5G09690.2); Has 466 Blast hits to 461 proteins in 115 species: Archae - 0; Bacteria - 11; Metazoa - 56; Fungi - 134; Plants - 200; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT5G64560.2p  transcript_id AT5G64560.2  protein_id AT5G64560.2p  transcript_id AT5G64560.2  
At5g64560	chr5:025809150	0.0	C/25809150-25809395,25809023-25809052,25808503-25808659,25808255-25808376,25808110-25808184,25807792-25808019,25807653-25807697,25807525-25807569,25807396-25807425,25807202-25807321,25807025-25807111	AT5G64560.1  CDS  gene_syn MUB3.8, MUB3_8  go_component membrane|GO:0016020||IEA  go_process metal ion transport|GO:0030001||IEA  go_function metal ion transmembrane transporter activity|GO:0046873||IEA  go_component membrane|GO:0016020||ISS  go_process metal ion transport|GO:0030001||ISS  go_function metal ion transmembrane transporter activity|GO:0046873||ISS  product magnesium transporter CorA-like family protein (MRS2-2)  note magnesium transporter CorA-like family protein (MRS2-2); FUNCTIONS IN: metal ion transmembrane transporter activity; INVOLVED IN: metal ion transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mg2+ transporter protein, CorA-like (InterPro:IPR002523); BEST Arabidopsis thaliana protein match is: magnesium transporter CorA-like family protein (MRS2-7) (TAIR:AT5G09690.2); Has 477 Blast hits to 470 proteins in 117 species: Archae - 0; Bacteria - 15; Metazoa - 56; Fungi - 134; Plants - 204; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT5G64560.1p  transcript_id AT5G64560.1  protein_id AT5G64560.1p  transcript_id AT5G64560.1  
At5g64572	chr5:025810298	0.0	W/25810298-25811733	AT5G64572.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT5G64570  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G64572.1  
At5g64570	chr5:025812860	0.0	C/25812860-25813309,25812190-25812477,25811824-25811993,25810885-25811741,25810227-25810816	AT5G64570.1  CDS  gene_syn ATBXL4, BETA-D-XYLOSIDASE 4, MUB3.9, MUB3_9, XYL4  gene XYL4  function Encodes a beta-d-xylosidase that belongs to family 3 of glycoside hydrolases.  go_component cell wall|GO:0005618|15593128|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process xylan catabolic process|GO:0045493|15181203|IDA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function xylan 1,4-beta-xylosidase activity|GO:0009044|15181203|IDA  product XYL4; hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase  note XYL4; FUNCTIONS IN: xylan 1,4-beta-xylosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: xylan catabolic process; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: BXL3 (beta-xylosidase 3); hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT5G09730.1); Has 5151 Blast hits to 4574 proteins in 662 species: Archae - 16; Bacteria - 2491; Metazoa - 9; Fungi - 917; Plants - 289; Viruses - 0; Other Eukaryotes - 1429 (source: NCBI BLink).  protein_id AT5G64570.1p  transcript_id AT5G64570.1  protein_id AT5G64570.1p  transcript_id AT5G64570.1  
At5g64580	chr5:025821196	0.0	C/25821196-25821465,25820674-25820929,25820198-25820573,25819849-25820107,25819615-25819746,25819452-25819526,25819255-25819380,25819065-25819174,25818898-25818976,25818686-25818823,25818478-25818589,25818216-25818379,25818022-25818127,25817850-25817926,25817626-25817769,25817391-25817534	AT5G64580.1  CDS  gene_syn MUB3.10, MUB3_10  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_function ATP binding|GO:0005524||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATP binding|GO:0005524||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, metalloendopeptidase activity, nucleotide binding, zinc ion binding, ATP binding; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: VAR1 (VARIEGATED 1); ATP-dependent peptidase/ ATPase/ metallopeptidase (TAIR:AT5G42270.1); Has 29440 Blast hits to 27884 proteins in 1904 species: Archae - 945; Bacteria - 10493; Metazoa - 4130; Fungi - 2527; Plants - 1734; Viruses - 43; Other Eukaryotes - 9568 (source: NCBI BLink).  protein_id AT5G64580.1p  transcript_id AT5G64580.1  protein_id AT5G64580.1p  transcript_id AT5G64580.1  
At5g64590	chr5:025823186	0.0	C/25823186-25823201,25822791-25823037,25822523-25822746,25822332-25822465	AT5G64590.1  CDS  gene_syn MUB3.11, MUB3_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); Has 32 Blast hits to 32 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G64590.1p  transcript_id AT5G64590.1  protein_id AT5G64590.1p  transcript_id AT5G64590.1  
At5g64600	chr5:025825178	0.0	W/25825178-25825420,25825530-25825623,25825728-25825795,25825884-25825972,25826070-25826247,25826324-25826452,25826784-25826920,25827027-25827240,25827325-25827509,25827602-25827697,25827796-25827931	AT5G64600.1  CDS  gene_syn MUB3.12, MUB3_12  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22460.1); Has 435 Blast hits to 425 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 435; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G64600.1p  transcript_id AT5G64600.1  protein_id AT5G64600.1p  transcript_id AT5G64600.1  
At5g64610	chr5:025830197	0.0	C/25830197-25830503,25829970-25830058,25829828-25829887,25829523-25829732,25829320-25829388,25829033-25829194,25828846-25828939,25828622-25828764,25828333-25828536	AT5G64610.1  CDS  gene_syn HAM1, HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 1, MUB3.13, MUB3_13  gene HAM1  function Encodes an enzyme with histone acetyltransferase activity. HAM1 primarily acetylate histone H4, but also display some ability to acetylate H3. Prior acetylation of lysine 5 on histone H4 reduces radioactive acetylation by either HAM1. HAM1 acetylates histone H4 lysine 5.  go_process chromatin assembly or disassembly|GO:0006333||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634|17877703|IDA  go_function nucleic acid binding|GO:0003676||ISS  go_function histone acetyltransferase activity|GO:0004402|12466527|ISS  go_function H3/H4 histone acetyltransferase activity|GO:0004406|17877703|IDA  go_function zinc ion binding|GO:0008270||ISS  product HAM1 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 1); H3/H4 histone acetyltransferase/ histone acetyltransferase/ nucleic acid binding / zinc ion binding  note HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 1 (HAM1); FUNCTIONS IN: histone acetyltransferase activity, zinc ion binding, nucleic acid binding, H3/H4 histone acetyltransferase activity; INVOLVED IN: chromatin assembly or disassembly, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Zinc finger, C2H2-like (InterPro:IPR015880), Acyl-CoA N-acyltransferase (InterPro:IPR016181), MOZ/SAS-like protein (InterPro:IPR002717), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: HAM2 (histone acetyltransferase of the MYST family 2); H3/H4 histone acetyltransferase/ histone acetyltransferase/ nucleic acid binding / zinc ion binding (TAIR:AT5G09740.1); Has 1320 Blast hits to 1265 proteins in 171 species: Archae - 0; Bacteria - 2; Metazoa - 784; Fungi - 306; Plants - 49; Viruses - 0; Other Eukaryotes - 179 (source: NCBI BLink).  protein_id AT5G64610.1p  transcript_id AT5G64610.1  protein_id AT5G64610.1p  transcript_id AT5G64610.1  
At5g64620	chr5:025831875	0.0	W/25831875-25832417	AT5G64620.1  CDS  gene_syn ATC/VIF2, C/VIF2, CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 2, MUB3.14, MUB3_14  gene C/VIF2  function Plant cell wall (CWI) and vacuolar invertases (VI) play important roles in carbohydrate metabolism, stress responses and sugar signaling.  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product C/VIF2 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 2); enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor  note CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 2 (C/VIF2); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT5G46930.1); Has 215 Blast hits to 215 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G64620.1p  transcript_id AT5G64620.1  protein_id AT5G64620.1p  transcript_id AT5G64620.1  
At5g64630	chr5:025833298	0.0	W/25833298-25833411,25833651-25833762,25833857-25833883,25833981-25834053,25834266-25834369,25834453-25834667,25834745-25834841,25834962-25835034,25835216-25835304,25835436-25835577,25835675-25835775,25835842-25836158	AT5G64630.2  CDS  gene_syn FAS2, FASCIATA 2, MUB3.15, MUB3.9, MUB3_15, NFB01, NFB1  gene FAS2  function Chromatin Assembly Factor-1 (CAF-1) p60 subunit. Involved in organization of the shoot and root apical meristems. In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively. Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis.  go_component chromatin assembly complex|GO:0005678|11163246|IPI  go_process double-strand break repair via homologous recombination|GO:0000724|17110925|IMP  go_process DNA recombination|GO:0006310|17110925|IMP  go_process nucleosome assembly|GO:0006334|11163246|IDA  go_process cell proliferation|GO:0008283|17021044|IMP  go_process pollen development|GO:0009555|18045841|IGI  go_process meristem structural organization|GO:0009933|11163246|IMP  go_process trichome differentiation|GO:0010026|17021044|IMP  go_process heterochromatin formation|GO:0031507|16452472|IMP  go_process leaf development|GO:0048366|17021044|IMP  go_function nucleotide binding|GO:0000166||ISS  go_function protein binding|GO:0005515|11163246|IPI  product FAS2 (FASCIATA 2); nucleotide binding / protein binding  note FASCIATA 2 (FAS2); FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: in 9 processes; LOCATED IN: chromatin assembly complex; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: HIRA (Arabidopsis homolog of histone chaperone HIRA); nucleotide binding / protein binding (TAIR:AT3G44530.1); Has 31817 Blast hits to 15361 proteins in 508 species: Archae - 56; Bacteria - 5354; Metazoa - 13232; Fungi - 6267; Plants - 2524; Viruses - 3; Other Eukaryotes - 4381 (source: NCBI BLink).  protein_id AT5G64630.2p  transcript_id AT5G64630.2  protein_id AT5G64630.2p  transcript_id AT5G64630.2  
At5g64630	chr5:025833298	0.0	W/25833298-25833411,25833651-25833762,25833857-25833883,25833981-25834053,25834266-25834369,25834453-25834667,25834745-25834841,25834962-25835034,25835216-25835304,25835436-25835577,25835675-25835822	AT5G64630.1  CDS  gene_syn FAS2, FASCIATA 2, MUB3.15, MUB3.9, MUB3_15, NFB01, NFB1  gene FAS2  function Chromatin Assembly Factor-1 (CAF-1) p60 subunit. Involved in organization of the shoot and root apical meristems. In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively. Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis.  go_component chromatin assembly complex|GO:0005678|11163246|IPI  go_process double-strand break repair via homologous recombination|GO:0000724|17110925|IMP  go_process DNA recombination|GO:0006310|17110925|IMP  go_process nucleosome assembly|GO:0006334|11163246|IDA  go_process cell proliferation|GO:0008283|17021044|IMP  go_process pollen development|GO:0009555|18045841|IGI  go_process meristem structural organization|GO:0009933|11163246|IMP  go_process trichome differentiation|GO:0010026|17021044|IMP  go_process heterochromatin formation|GO:0031507|16452472|IMP  go_process leaf development|GO:0048366|17021044|IMP  go_function nucleotide binding|GO:0000166||ISS  go_function protein binding|GO:0005515|11163246|IPI  product FAS2 (FASCIATA 2); nucleotide binding / protein binding  note FASCIATA 2 (FAS2); FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: in 9 processes; LOCATED IN: chromatin assembly complex; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: HIRA (Arabidopsis homolog of histone chaperone HIRA); nucleotide binding / protein binding (TAIR:AT3G44530.1); Has 31848 Blast hits to 15312 proteins in 507 species: Archae - 56; Bacteria - 5400; Metazoa - 13252; Fungi - 6258; Plants - 2525; Viruses - 0; Other Eukaryotes - 4357 (source: NCBI BLink).  protein_id AT5G64630.1p  transcript_id AT5G64630.1  protein_id AT5G64630.1p  transcript_id AT5G64630.1  
At5g64630	chr5:025833724	0.0	W/25833724-25833772,25833857-25833883,25833981-25834053,25834266-25834369,25834453-25834667,25834745-25834841,25834962-25835034,25835216-25835304,25835436-25835577,25835675-25835775,25835842-25836158	AT5G64630.3  CDS  gene_syn FAS2, FASCIATA 2, MUB3.15, MUB3.9, MUB3_15, NFB01, NFB1  gene FAS2  function Chromatin Assembly Factor-1 (CAF-1) p60 subunit. Involved in organization of the shoot and root apical meristems. In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively. Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis.  go_component chromatin assembly complex|GO:0005678|11163246|IPI  go_process double-strand break repair via homologous recombination|GO:0000724|17110925|IMP  go_process DNA recombination|GO:0006310|17110925|IMP  go_process nucleosome assembly|GO:0006334|11163246|IDA  go_process cell proliferation|GO:0008283|17021044|IMP  go_process pollen development|GO:0009555|18045841|IGI  go_process meristem structural organization|GO:0009933|11163246|IMP  go_process trichome differentiation|GO:0010026|17021044|IMP  go_process heterochromatin formation|GO:0031507|16452472|IMP  go_process leaf development|GO:0048366|17021044|IMP  go_function nucleotide binding|GO:0000166||ISS  go_function protein binding|GO:0005515|11163246|IPI  product FAS2 (FASCIATA 2); nucleotide binding / protein binding  note FASCIATA 2 (FAS2); FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: in 9 processes; LOCATED IN: chromatin assembly complex; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: HIRA (Arabidopsis homolog of histone chaperone HIRA); nucleotide binding / protein binding (TAIR:AT3G44530.1); Has 15290 Blast hits to 8606 proteins in 424 species: Archae - 40; Bacteria - 2931; Metazoa - 5775; Fungi - 3195; Plants - 1043; Viruses - 3; Other Eukaryotes - 2303 (source: NCBI BLink).  protein_id AT5G64630.3p  transcript_id AT5G64630.3  protein_id AT5G64630.3p  transcript_id AT5G64630.3  
At5g64640	chr5:025836820	0.0	W/25836820-25837939,25838365-25839053	AT5G64640.1  CDS  gene_syn MUB3.16, MUB3_16  go_component plasma membrane|GO:0005886|17317660|IDA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: plasma membrane, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase inhibitor (InterPro:IPR006501), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT5G09760.1); Has 1475 Blast hits to 1445 proteins in 275 species: Archae - 0; Bacteria - 426; Metazoa - 1; Fungi - 124; Plants - 922; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G64640.1p  transcript_id AT5G64640.1  protein_id AT5G64640.1p  transcript_id AT5G64640.1  
At5g64650	chr5:025840720	0.0	C/25840720-25840775,25840561-25840615,25840400-25840450,25840098-25840189,25839927-25840004,25839542-25839692	AT5G64650.1  CDS  gene_syn MUB3.17, MUB3_17  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  product ribosomal protein L17 family protein  note ribosomal protein L17 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L17 (InterPro:IPR000456); BEST Arabidopsis thaliana protein match is: ribosomal protein L17 family protein (TAIR:AT5G09770.1); Has 5414 Blast hits to 5398 proteins in 1517 species: Archae - 0; Bacteria - 3033; Metazoa - 81; Fungi - 83; Plants - 73; Viruses - 0; Other Eukaryotes - 2144 (source: NCBI BLink).  protein_id AT5G64650.1p  transcript_id AT5G64650.1  protein_id AT5G64650.1p  transcript_id AT5G64650.1  
At5g64660	chr5:025842119	0.0	C/25842119-25843381	AT5G64660.1  CDS  gene_syn MUB3.18, MUB3_18  go_component ubiquitin ligase complex|GO:0000151||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  go_process response to chitin|GO:0010200|17722694|IEP  product U-box domain-containing protein  note U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein (TAIR:AT5G09800.1); Has 1108 Blast hits to 1095 proteins in 74 species: Archae - 0; Bacteria - 16; Metazoa - 70; Fungi - 9; Plants - 913; Viruses - 3; Other Eukaryotes - 97 (source: NCBI BLink).  protein_id AT5G64660.1p  transcript_id AT5G64660.1  protein_id AT5G64660.1p  transcript_id AT5G64660.1  
At5g64667	chr5:025850797	0.0	W/25850797-25851084	AT5G64667.1  CDS  gene_syn IDL2, INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 2  gene IDL2  function Similar to Inflorescence deficient in abscission (IDA). Involved in floral organ abscission.  go_process floral organ abscission|GO:0010227|18660431|IMP  product IDL2 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 2)  note INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 2 (IDL2); INVOLVED IN: floral organ abscission; EXPRESSED IN: leaf abscission zone, vascular tissue, fruit abscission zone, flower abscission zone; BEST Arabidopsis thaliana protein match is: IDL3 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 3) (TAIR:AT5G09805.1); Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G64667.1p  transcript_id AT5G64667.1  protein_id AT5G64667.1p  transcript_id AT5G64667.1  
At5g64670	chr5:025853476	0.0	C/25853476-25853880,25853103-25853186,25852915-25853004,25852535-25852801	AT5G64670.1  CDS  gene_syn MUB3.19, MUB3_19  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_component large ribosomal subunit|GO:0015934||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L15 family protein  note ribosomal protein L15 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L15, bacterial-type (InterPro:IPR005749), Ribosomal protein L15 (InterPro:IPR001196); Has 5287 Blast hits to 5287 proteins in 1515 species: Archae - 0; Bacteria - 2940; Metazoa - 111; Fungi - 84; Plants - 51; Viruses - 0; Other Eukaryotes - 2101 (source: NCBI BLink).  protein_id AT5G64670.1p  transcript_id AT5G64670.1  protein_id AT5G64670.1p  transcript_id AT5G64670.1  
At5g64680	chr5:025854433	0.0	W/25854433-25854549,25854631-25854709,25854770-25854874,25854997-25855331	AT5G64680.3  CDS  gene_syn MUB3.20, MUB3_20  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages.  protein_id AT5G64680.3p  transcript_id AT5G64680.3  protein_id AT5G64680.3p  transcript_id AT5G64680.3  
At5g64680	chr5:025854433	0.0	W/25854433-25854549,25854631-25854709,25854794-25854874,25854997-25855331	AT5G64680.1  CDS  gene_syn MUB3.20, MUB3_20  go_component nucleolus|GO:0005730|15496452|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 102 Blast hits to 98 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 45; Fungi - 9; Plants - 23; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT5G64680.1p  transcript_id AT5G64680.1  protein_id AT5G64680.1p  transcript_id AT5G64680.1  
At5g64680	chr5:025854433	0.0	W/25854433-25854549,25854631-25854709,25854794-25854874,25854997-25855331	AT5G64680.2  CDS  gene_syn MUB3.20, MUB3_20  go_component nucleolus|GO:0005730|15496452|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 102 Blast hits to 98 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 45; Fungi - 9; Plants - 23; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT5G64680.2p  transcript_id AT5G64680.2  protein_id AT5G64680.2p  transcript_id AT5G64680.2  
At5g64685	chr5:025855347	0.0	C/25855347-25857377	AT5G64685.1  mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 2.6e-85 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At5g64690	chr5:025862969	0.0	W/25862969-25863223,25863742-25864521	AT5G64690.1  CDS  gene_syn MUB3.22, MUB3_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product neurofilament triplet H protein-related  note neurofilament triplet H protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; Has 7507 Blast hits to 4538 proteins in 516 species: Archae - 35; Bacteria - 1093; Metazoa - 3104; Fungi - 584; Plants - 222; Viruses - 21; Other Eukaryotes - 2448 (source: NCBI BLink).  protein_id AT5G64690.1p  transcript_id AT5G64690.1  protein_id AT5G64690.1p  transcript_id AT5G64690.1  
At5g64700	chr5:025866667	0.0	C/25866667-25866845,25866525-25866587,25866303-25866419,25865939-25866200,25865666-25865824,25865419-25865570,25865190-25865337	AT5G64700.1  CDS  gene_syn MVP7.2, MVP7_2  go_component membrane|GO:0016020||IEA  go_function molecular_function|GO:0003674||ND  product nodulin MtN21 family protein  note nodulin MtN21 family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: integral membrane family protein / nodulin MtN21-related (TAIR:AT1G43650.1); Has 2840 Blast hits to 2820 proteins in 398 species: Archae - 26; Bacteria - 1063; Metazoa - 4; Fungi - 4; Plants - 650; Viruses - 0; Other Eukaryotes - 1093 (source: NCBI BLink).  protein_id AT5G64700.1p  transcript_id AT5G64700.1  protein_id AT5G64700.1p  transcript_id AT5G64700.1  
At5g64710	chr5:025869368	0.0	W/25869368-25869758,25869867-25871166,25871258-25872092	AT5G64710.1  CDS  gene_syn MVP7.3, MVP7_3  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09840.1); Has 218 Blast hits to 205 proteins in 45 species: Archae - 2; Bacteria - 14; Metazoa - 58; Fungi - 12; Plants - 121; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT5G64710.1p  transcript_id AT5G64710.1  protein_id AT5G64710.1p  transcript_id AT5G64710.1  
At5g64710	chr5:025869851	0.0	W/25869851-25871166,25871258-25872092	AT5G64710.2  CDS  gene_syn MVP7.3, MVP7_3  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09840.1); Has 106 Blast hits to 95 proteins in 19 species: Archae - 2; Bacteria - 4; Metazoa - 4; Fungi - 10; Plants - 79; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G64710.2p  transcript_id AT5G64710.2  protein_id AT5G64710.2p  transcript_id AT5G64710.2  
At5g64720	chr5:025872346	0.0	C/25872346-25872813	AT5G64720.1  CDS  gene_syn MVP7.4, MVP7_4  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: embryo; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1278 (InterPro:IPR010701); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G21740.1); Has 42 Blast hits to 42 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G64720.1p  transcript_id AT5G64720.1  protein_id AT5G64720.1p  transcript_id AT5G64720.1  
At5g64730	chr5:025873146	0.0	W/25873146-25873354,25873730-25873832,25873931-25874038,25874145-25874254,25874343-25874450,25874545-25874590,25874708-25874839,25874938-25875021	AT5G64730.1  CDS  gene_syn MVP7.5, MVP7_5  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT4G02730.1); Has 47430 Blast hits to 22242 proteins in 634 species: Archae - 54; Bacteria - 5623; Metazoa - 21672; Fungi - 9140; Plants - 3933; Viruses - 3; Other Eukaryotes - 7005 (source: NCBI BLink).  protein_id AT5G64730.1p  transcript_id AT5G64730.1  protein_id AT5G64730.1p  transcript_id AT5G64730.1  
At5g64735	chr5:025875394	0.0	C/25875394-25875465	AT5G64735.1  tRNA  gene_syn 67920.TRNA-HIS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-His (anticodon: GTG)  transcript_id AT5G64735.1  
At5g64740	chr5:025881555	0.0	W/25881555-25881635,25882030-25882225,25882314-25882516,25882600-25882877,25882960-25883226,25883310-25883655,25883843-25883980,25884067-25884192,25884304-25884516,25884600-25884876,25884962-25885158,25885241-25885591,25885752-25886333	AT5G64740.1  CDS  gene_syn CELLULOSE SYNTHASE 6, CESA6, E112, ISOXABEN RESISTANT 2, IXR2, MVP7.7, MVP7_7, PRC1, PROCUSTE 1  gene CESA6  function Encodes a cellulose synthase isomer. CESA6 mutants have cellulose defect in the primary cell wall. Multiple lines of evidence suggest that CESA6, along with CESA1 and CESA3 are present in the same plasma membrane complex for cellulose biosynthesis. CESA2 and CESA5 are related to CESA6, having partially redundant roles.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component Golgi apparatus|GO:0005794|16627697|IDA  go_component plasma membrane|GO:0005886|10330464|TAS  go_component plasma membrane|GO:0005886|16627697|IDA  go_component cortical microtubule, transverse to long axis|GO:0010005|16627697|IDA  go_component cellulose synthase complex|GO:0010330|16627697|NAS  go_process plant-type cell wall biogenesis|GO:0009832|9165747|TAS  go_process primary cell wall biogenesis|GO:0009833|11842152|IMP  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_process cell growth|GO:0016049|16627697|IMP  go_process cellulose biosynthetic process|GO:0030244|11842152|IMP  go_process cortical microtubule organization|GO:0043622|18583534|IMP  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  product CESA6 (CELLULOSE SYNTHASE 6); cellulose synthase/ transferase, transferring glycosyl groups  note CELLULOSE SYNTHASE 6 (CESA6); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: in 6 processes; LOCATED IN: cortical microtubule, transverse to long axis, Golgi apparatus, cellulose synthase complex, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: CESA5 (CELLULOSE SYNTHASE 5); cellulose synthase/ transferase, transferring glycosyl groups (TAIR:AT5G09870.1); Has 2217 Blast hits to 1987 proteins in 437 species: Archae - 4; Bacteria - 762; Metazoa - 3; Fungi - 18; Plants - 1353; Viruses - 9; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT5G64740.1p  transcript_id AT5G64740.1  protein_id AT5G64740.1p  transcript_id AT5G64740.1  
At5g64750	chr5:025891679	0.0	W/25891679-25892117,25892920-25893656	AT5G64750.1  CDS  gene_syn ABA REPRESSOR1, ABR1, MVP7.8, MVP7_8  gene ABR1  function Encodes a putative transcription factor containing an AP2 domain. Is a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. Expressed in response to ABA, osmotic stress, sugar stress and drought. Mutants are hypersensitive to these stresses. May be involved in regulation of ABA mediated stress response.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to osmotic stress|GO:0006970|16227468|IEP  go_process response to abscisic acid stimulus|GO:0009737|16227468|IEP  go_process response to glucose stimulus|GO:0009749|16227468|IEP  go_process negative regulation of abscisic acid mediated signaling|GO:0009788|16227468|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product ABR1 (ABA REPRESSOR1); DNA binding / transcription factor  note ABA REPRESSOR1 (ABR1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: negative regulation of abscisic acid mediated signaling, response to abscisic acid stimulus, regulation of transcription, DNA-dependent, response to osmotic stress, response to glucose stimulus; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT5G50080.1); Has 4233 Blast hits to 3854 proteins in 242 species: Archae - 0; Bacteria - 8; Metazoa - 63; Fungi - 16; Plants - 3901; Viruses - 0; Other Eukaryotes - 245 (source: NCBI BLink).  protein_id AT5G64750.1p  transcript_id AT5G64750.1  protein_id AT5G64750.1p  transcript_id AT5G64750.1  
At5g64760	chr5:025896439	0.0	C/25896439-25896445,25896145-25896335,25895877-25895984,25895660-25895764,25895505-25895561,25895204-25895400,25894961-25895060,25894754-25894866,25894499-25894652,25894323-25894400,25894027-25894245	AT5G64760.2  CDS  gene_syn MVP7.9, MVP7_9, REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B, RPN5B  gene RPN5B  function Encodes one of two isoforms for the 26S proteasome regulatory protein (RN) subunit RPN5. For many functions it acts redundantly with the paralogous genes RPN5a.  go_component nucleus|GO:0005634|11742986|TAS  go_component nucleus|GO:0005634|19252082|IDA  go_component cytoplasm|GO:0005737|19252082|IDA  go_component proteasome regulatory particle, lid subcomplex|GO:0008541||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_process multicellular organismal development|GO:0007275|19252082|IMP  go_process protein catabolic process|GO:0030163|11742986|TAS  go_function molecular_function|GO:0003674||ND  product RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)  note REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B (RPN5B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: multicellular organismal development, protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus, proteasome regulatory particle, lid subcomplex, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Proteasome component region PCI (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: EMB2107 (EMBRYO DEFECTIVE 2107) (TAIR:AT5G09900.2); Has 612 Blast hits to 607 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 264; Fungi - 186; Plants - 62; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).  protein_id AT5G64760.2p  transcript_id AT5G64760.2  protein_id AT5G64760.2p  transcript_id AT5G64760.2  
At5g64760	chr5:025896443	0.0	C/25896443-25896445,25896145-25896339,25895877-25895984,25895660-25895764,25895505-25895561,25895204-25895400,25894961-25895060,25894754-25894866,25894499-25894652,25894323-25894400,25894027-25894245	AT5G64760.1  CDS  gene_syn MVP7.9, MVP7_9, REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B, RPN5B  gene RPN5B  function Encodes one of two isoforms for the 26S proteasome regulatory protein (RN) subunit RPN5. For many functions it acts redundantly with the paralogous genes RPN5a.  go_component nucleus|GO:0005634|11742986|TAS  go_component nucleus|GO:0005634|19252082|IDA  go_component cytoplasm|GO:0005737|19252082|IDA  go_component proteasome regulatory particle, lid subcomplex|GO:0008541||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_process multicellular organismal development|GO:0007275|19252082|IMP  go_process protein catabolic process|GO:0030163|11742986|TAS  go_function molecular_function|GO:0003674||ND  product RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)  note REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B (RPN5B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: multicellular organismal development, protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus, proteasome regulatory particle, lid subcomplex, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Proteasome component region PCI (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: EMB2107 (EMBRYO DEFECTIVE 2107) (TAIR:AT5G09900.1); Has 614 Blast hits to 609 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 264; Fungi - 186; Plants - 62; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).  protein_id AT5G64760.1p  transcript_id AT5G64760.1  protein_id AT5G64760.1p  transcript_id AT5G64760.1  
At5g64770	chr5:025898010	0.0	C/25898010-25898085,25897681-25897844	AT5G64770.1  CDS  gene_syn GLV2, GOLVEN 2, MVP7.10, MVP7_10  go_component endomembrane system|GO:0012505||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G64770.1p  transcript_id AT5G64770.1  protein_id AT5G64770.1p  transcript_id AT5G64770.1  
At5g64780	chr5:025901797	0.0	C/25901797-25901955,25901153-25901233,25900700-25900987	AT5G64780.1  CDS  gene_syn MVP7.11, MVP7_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP009193 (InterPro:IPR016549); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09830.1); Has 56 Blast hits to 56 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G64780.1p  transcript_id AT5G64780.1  protein_id AT5G64780.1p  transcript_id AT5G64780.1  
At5g64790	chr5:025902713	0.0	W/25902713-25903059,25903373-25903829,25903906-25904559	AT5G64790.1  CDS  gene_syn MXK3.1, MXK3_1  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT1G64760.2); Has 1738 Blast hits to 1684 proteins in 140 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 65; Plants - 1655; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G64790.1p  transcript_id AT5G64790.1  protein_id AT5G64790.1p  transcript_id AT5G64790.1  
At5g64800	chr5:025906083	0.0	W/25906083-25906403	AT5G64800.1  CDS  gene_syn CLAVATA3/ESR-RELATED 21, CLE21, MXK3.2, MXK3_2  gene CLE21  function Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.  go_component apoplast|GO:0048046|11457943|RCA  go_process signal transduction|GO:0007165||ISS  go_function receptor binding|GO:0005102||ISS  go_function protein binding|GO:0005515|11457943|ISS  product CLE21 (CLAVATA3/ESR-RELATED 21); protein binding / receptor binding  note CLAVATA3/ESR-RELATED 21 (CLE21); FUNCTIONS IN: protein binding, receptor binding; INVOLVED IN: signal transduction; LOCATED IN: apoplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 leaf senescence stage, LP.02 two leaves visible, petal differentiation and expansion stage; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G64800.1p  transcript_id AT5G64800.1  protein_id AT5G64800.1p  transcript_id AT5G64800.1  
At5g64810	chr5:025908415	0.0	W/25908415-25908656,25908764-25908910,25909492-25909687	AT5G64810.1  CDS  gene_syn MXK3.34, WRKY51, atwrky51  gene WRKY51  function member of WRKY Transcription Factor; Group II-c  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY51; transcription factor  note WRKY51; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY50; transcription factor (TAIR:AT5G26170.1); Has 1969 Blast hits to 1696 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1955; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT5G64810.1p  transcript_id AT5G64810.1  protein_id AT5G64810.1p  transcript_id AT5G64810.1  
At5g64813	chr5:025910836	0.0	W/25910836-25910929,25911281-25911372,25911453-25911594,25911673-25911980,25912071-25912124,25912214-25912347,25912421-25912625	AT5G64813.1  CDS  gene_syn LIP1, Light Insensitive Period1  gene LIP1  function The LIP1 gene encodes a small GTPase that influences the light input pathway of the plant circadian network. An MBP:LIP1 fusion protein has GTP hydrolyzing abilities in vitro. In plants, LIP1 seems to play a negative role in regulating circadian period that can be suppressed by light. LIP1 also seems to negatively affect light-pulse-dependent resetting of the clock, especially during the first portion of the subjective evening. LIP1 expression levels are not significantly affected by the circadian clock in seedlings grown under LL conditions. The levels of the YFP:LIP1 protein expressed under the control of the 35S promoter, shows a low amplitude variation, with protein levels peaking near the beginning of subjective night under LL conditions. In hypocotyl epidermal cells of dark and light-grown seedlings, a YFP:LIP1 fusion protein can be seen in the cytoplasm and the nucleus, and does not cluster in nuclear speckles. LIP1 may also be involved in photomorphogenesis.  go_component nucleus|GO:0005634|17683937|IDA  go_component cytoplasm|GO:0005737|17683937|IDA  go_process photomorphogenesis|GO:0009640|17683937|IMP  go_process circadian regulation of gene expression|GO:0032922|17683937|IMP  go_function GTPase activity|GO:0003924|17683937|IDA  product LIP1 (Light Insensitive Period1); GTPase  note Light Insensitive Period1 (LIP1); FUNCTIONS IN: GTPase activity; INVOLVED IN: circadian regulation of gene expression, photomorphogenesis; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Miro-like (InterPro:IPR013684); BEST Arabidopsis thaliana protein match is: ATP binding / GTP binding / transcription factor binding (TAIR:AT5G09910.1); Has 10129 Blast hits to 10128 proteins in 330 species: Archae - 2; Bacteria - 22; Metazoa - 5130; Fungi - 996; Plants - 1151; Viruses - 3; Other Eukaryotes - 2825 (source: NCBI BLink).  protein_id AT5G64813.1p  transcript_id AT5G64813.1  protein_id AT5G64813.1p  transcript_id AT5G64813.1  
At5g64816	chr5:025913487	0.0	W/25913487-25913879	AT5G64816.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G64816.1p  transcript_id AT5G64816.1  protein_id AT5G64816.1p  transcript_id AT5G64816.1  
At5g64816	chr5:025913487	0.0	W/25913487-25913879	AT5G64816.2  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G64816.2p  transcript_id AT5G64816.2  protein_id AT5G64816.2p  transcript_id AT5G64816.2  
At5g64820	chr5:025914285	0.0	C/25914285-25914523,25913999-25914197	AT5G64820.1  CDS  gene_syn MXK3.4, MXK3_4  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16850.1); Has 10 Blast hits to 10 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G64820.1p  transcript_id AT5G64820.1  protein_id AT5G64820.1p  transcript_id AT5G64820.1  
At5g64830	chr5:025916046	0.0	C/25916046-25916074,25915392-25915943,25915102-25915309,25914911-25915015	AT5G64830.2  CDS  gene_syn MXK3.5, MXK3_5  go_component cytoplasm|GO:0005737||IEA  go_component cytoplasm|GO:0005737||ISS  go_process apoptosis|GO:0006915||ISS  go_function molecular_function|GO:0003674||ND  product programmed cell death 2 C-terminal domain-containing protein  note programmed cell death 2 C-terminal domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: apoptosis; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Programmed cell death protein 2, C-terminal (InterPro:IPR007320); BEST Arabidopsis thaliana protein match is: zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein (TAIR:AT4G02220.1); Has 454 Blast hits to 454 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 218; Fungi - 103; Plants - 48; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT5G64830.2p  transcript_id AT5G64830.2  protein_id AT5G64830.2p  transcript_id AT5G64830.2  
At5g64830	chr5:025916420	0.0	C/25916420-25916512,25916243-25916329,25916046-25916143,25915392-25915943,25915102-25915309,25914911-25915015	AT5G64830.1  CDS  gene_syn MXK3.5, MXK3_5  go_component cytoplasm|GO:0005737||IEA  go_component cytoplasm|GO:0005737||ISS  go_process apoptosis|GO:0006915||ISS  go_function molecular_function|GO:0003674||ND  product programmed cell death 2 C-terminal domain-containing protein  note programmed cell death 2 C-terminal domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: apoptosis; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Programmed cell death protein 2, C-terminal (InterPro:IPR007320); BEST Arabidopsis thaliana protein match is: zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein (TAIR:AT4G02220.1); Has 526 Blast hits to 479 proteins in 145 species: Archae - 0; Bacteria - 0; Metazoa - 271; Fungi - 105; Plants - 49; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT5G64830.1p  transcript_id AT5G64830.1  protein_id AT5G64830.1p  transcript_id AT5G64830.1  
At5g64840	chr5:025918866	0.0	C/25918866-25919693,25918431-25918772,25918113-25918253,25917841-25918020,25917476-25917733,25917242-25917370,25916956-25917156	AT5G64840.1  CDS  gene_syn A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5, ATGCN5, MXK3.6, MXK3_6  gene ATGCN5  function member of GCN subfamily  go_process response to nematode|GO:0009624|16478044|IEP  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  product ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5); transporter  note A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5 (ATGCN5); FUNCTIONS IN: transporter activity; INVOLVED IN: response to nematode; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATGCN2; transporter (TAIR:AT5G09930.1); Has 411920 Blast hits to 218568 proteins in 2526 species: Archae - 7785; Bacteria - 285491; Metazoa - 10606; Fungi - 5003; Plants - 3005; Viruses - 55; Other Eukaryotes - 99975 (source: NCBI BLink).  protein_id AT5G64840.1p  transcript_id AT5G64840.1  protein_id AT5G64840.1p  transcript_id AT5G64840.1  
At5g64850	chr5:025921585	0.0	W/25921585-25921602,25921866-25922144,25922991-25923038	AT5G64850.1  CDS  gene_syn MXK3.7, MXK3_7  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09960.1); Has 33 Blast hits to 33 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G64850.1p  transcript_id AT5G64850.1  protein_id AT5G64850.1p  transcript_id AT5G64850.1  
At5g64855	chr5:025925066	0.0	W/25925066-25925146	AT5G64855.1  tRNA  gene_syn 67921.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: AAG)  transcript_id AT5G64855.1  
At5g64860	chr5:025928423	0.0	C/25928423-25928788,25928302-25928352,25928128-25928216,25927993-25928053,25927854-25927932,25927618-25927754,25927356-25927514,25927175-25927251,25926805-25926944,25926672-25926703,25926521-25926595,25926143-25926215,25925973-25926061,25925849-25925893,25925602-25925754,25925373-25925477	AT5G64860.1  CDS  gene_syn DISPROPORTIONATING ENZYME, DPE1, MXK3.9, MXK3_9  gene DPE1  function Encodes a maltotriose-metabolizing enzyme with chloroplastic & 945;-1,4-glucanotransferase activity. Mutant has altered starch degradation.  go_component chloroplast|GO:0009507|18431481|IDA  go_function catalytic activity|GO:0003824||IEA  go_function 4-alpha-glucanotransferase activity|GO:0004134||IEA  go_function cation binding|GO:0043169||IEA  go_process starch catabolic process|GO:0005983|15862090|TAS  go_process response to cold|GO:0009409|16297066|IEP  go_function 4-alpha-glucanotransferase activity|GO:0004134||ISS  product DPE1 (DISPROPORTIONATING ENZYME); 4-alpha-glucanotransferase/ catalytic/ cation binding  note DISPROPORTIONATING ENZYME (DPE1); FUNCTIONS IN: 4-alpha-glucanotransferase activity, cation binding, catalytic activity; INVOLVED IN: response to cold, starch catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 77 (InterPro:IPR003385), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: DPE2 (DISPROPORTIONATING ENZYME 2); 4-alpha-glucanotransferase/ heteroglycan binding (TAIR:AT2G40840.1); Has 2236 Blast hits to 2212 proteins in 759 species: Archae - 23; Bacteria - 1530; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 626 (source: NCBI BLink).  protein_id AT5G64860.1p  transcript_id AT5G64860.1  protein_id AT5G64860.1p  transcript_id AT5G64860.1  
At5g64870	chr5:025930945	0.0	C/25930945-25931308,25929776-25930851	AT5G64870.1  CDS  gene_syn MXK3.10, MXK3_10  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25250.1); Has 3110 Blast hits to 2534 proteins in 575 species: Archae - 10; Bacteria - 1084; Metazoa - 749; Fungi - 138; Plants - 89; Viruses - 0; Other Eukaryotes - 1040 (source: NCBI BLink).  protein_id AT5G64870.1p  transcript_id AT5G64870.1  protein_id AT5G64870.1p  transcript_id AT5G64870.1  
At5g64880	chr5:025932353	0.0	W/25932353-25932634,25933641-25933874	AT5G64880.1  CDS  gene_syn MXK3.11, MXK3_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G64880.1p  transcript_id AT5G64880.1  protein_id AT5G64880.1p  transcript_id AT5G64880.1  
At5g64890	chr5:025934646	0.0	W/25934646-25934801,25935172-25935345	AT5G64890.1  CDS  gene_syn Elicitor peptide 2 precursor, MXK3.12, MXK3_12, PROPEP2  gene PROPEP2  go_component cellular_component|GO:0005575||ND  go_process response to salicylic acid stimulus|GO:0009751|17566109|IEP  go_process response to jasmonic acid stimulus|GO:0009753|17566109|IEP  go_process defense response, incompatible interaction|GO:0009814|17566109|IEP  go_function molecular_function|GO:0003674||ND  product PROPEP2 (Elicitor peptide 2 precursor)  note Elicitor peptide 2 precursor (PROPEP2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to jasmonic acid stimulus, defense response, incompatible interaction, response to salicylic acid stimulus; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: PROPEP1 (TAIR:AT5G64900.1); Has 10 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G64890.1p  transcript_id AT5G64890.1  protein_id AT5G64890.1p  transcript_id AT5G64890.1  
At5g64900	chr5:025937253	0.0	W/25937253-25937402,25937811-25937939	AT5G64900.1  CDS  gene_syn ATPEP1, ELICITOR PEPTIDE 1 PRECURSOR, MXK3.13, MXK3_13, PROPEP1  gene PROPEP1  function Encodes a putative 92-aa protein that is the precursor of AtPep1, a 23-aa peptide which activates transcription of the defensive gene defensin (PDF1.2) and activates the synthesis of H2O2, both being components of the innate immune response.  go_process response to wounding|GO:0009611|16785434|IEP  go_process response to ethylene stimulus|GO:0009723|16785434|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16785434|IEP  go_process innate immune response|GO:0045087|16785434|IDA  product PROPEP1  note PROPEP1; INVOLVED IN: response to jasmonic acid stimulus, response to ethylene stimulus, response to wounding, innate immune response; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PROPEP2 (Elicitor peptide 2 precursor) (TAIR:AT5G64890.1); Has 17 Blast hits to 17 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G64900.1p  transcript_id AT5G64900.1  protein_id AT5G64900.1p  transcript_id AT5G64900.1  
At5g64905	chr5:025939634	0.0	W/25939634-25939924	AT5G64905.1  CDS  gene_syn Elicitor peptide 3 precursor, PROPEP3  gene PROPEP3  go_component cellular_component|GO:0005575||ND  go_process defense response|GO:0006952|17566109|IEP  go_process response to salicylic acid stimulus|GO:0009751|17566109|IEP  go_function molecular_function|GO:0003674||ND  product PROPEP3 (Elicitor peptide 3 precursor)  note Elicitor peptide 3 precursor (PROPEP3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response, response to salicylic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, root, pollen tube; Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G64905.1p  transcript_id AT5G64905.1  protein_id AT5G64905.1p  transcript_id AT5G64905.1  
At5g64910	chr5:025940900	0.0	W/25940900-25941457,25941757-25941795,25941903-25941956,25942084-25942147,25942297-25942355,25942487-25942611,25942757-25942816,25943070-25943128,25943260-25943336,25943422-25943460,25943527-25943589,25943677-25943724,25943793-25943924,25944028-25944114	AT5G64910.1  CDS  gene_syn MXK3.14, MXK3_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10010.1); Has 80541 Blast hits to 36003 proteins in 1683 species: Archae - 182; Bacteria - 8553; Metazoa - 32640; Fungi - 8523; Plants - 3064; Viruses - 822; Other Eukaryotes - 26757 (source: NCBI BLink).  protein_id AT5G64910.1p  transcript_id AT5G64910.1  protein_id AT5G64910.1p  transcript_id AT5G64910.1  
At5g64920	chr5:025944338	0.0	C/25944338-25945342	AT5G64920.1  CDS  gene_syn CIP8, COP1-INTERACTING PROTEIN 8, COP1-INTERACTING PROTEIN CIP8, MXK3.15, MXK3_15  gene CIP8  function Encodes a RING-H2 protein that interacts with the RING finger domain of COP1. CIP8 exhibits a strong interaction with the E2 ubiquitin conjugating enzyme AtUBC8 through its N-terminal domain and promotes ubiquitination in an E2-dependent fashion in vitro. It is possible that the AtUBC8-CIP8 module might interact with COP1 in vivo, thereby participating in proteasome-mediated degradation of HY5.  go_component cytoplasm|GO:0005737|10488108|IDA  go_process protein ubiquitination|GO:0016567|12028569|IDA  go_function protein binding|GO:0005515|10488108|IPI  go_function protein binding|GO:0005515|12028569|IPI  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270|10488108|ISS  go_function zinc ion binding|GO:0008270||ISS  product CIP8 (COP1-INTERACTING PROTEIN 8); protein binding / zinc ion binding  note COP1-INTERACTING PROTEIN 8 (CIP8); FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: protein ubiquitination; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G15820.1); Has 9386 Blast hits to 7364 proteins in 270 species: Archae - 0; Bacteria - 194; Metazoa - 3174; Fungi - 1015; Plants - 2287; Viruses - 226; Other Eukaryotes - 2490 (source: NCBI BLink).  protein_id AT5G64920.1p  transcript_id AT5G64920.1  protein_id AT5G64920.1p  transcript_id AT5G64920.1  
At5g64930	chr5:025947935	0.0	C/25947935-25948321,25947318-25947374,25947177-25947212,25945885-25947099	AT5G64930.1  CDS  gene_syn CONSTITUTIVE EXPRESSION OF PR GENES 5, CPR5, HYPERSENESCENCE 1, HYS1, MXK3.16, MXK3_16  gene CPR5  function Regulator of expression of pathogenesis-related (PR) genes. Participates in signal transduction pathways involved in plant defense (systemic acquired resistance -SAR).  go_component nucleus|GO:0005634|11846876|TAS  go_component membrane|GO:0016020|11846876|TAS  go_process defense response|GO:0006952|11437443|TAS  go_process plant-type hypersensitive response|GO:0009626|11439127|TAS  go_process systemic acquired resistance|GO:0009627|11090217|IMP  go_process systemic acquired resistance|GO:0009627|11090217|TAS  go_process systemic acquired resistance|GO:0009627|11439127|TAS  go_process jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway|GO:0009868|11439127|TAS  go_process trichome morphogenesis|GO:0010090|9338960|IMP  go_process leaf senescence|GO:0010150|11846876|IMP  go_process sugar mediated signaling|GO:0010182|12663220|TAS  go_process photoperiodism, flowering|GO:0048573|18799658|IMP  go_process response to other organism|GO:0051707|11439127|TAS  go_function molecular_function|GO:0003674||ND  product CPR5 (CONSTITUTIVE EXPRESSION OF PR GENES 5)  note CONSTITUTIVE EXPRESSION OF PR GENES 5 (CPR5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 9 processes; LOCATED IN: nucleus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 124 Blast hits to 124 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 116; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G64930.1p  transcript_id AT5G64930.1  protein_id AT5G64930.1p  transcript_id AT5G64930.1  
At5g64940	chr5:025949116	0.0	W/25949116-25949589,25949676-25949811,25949896-25950062,25950150-25950270,25950353-25950453,25950594-25950692,25950904-25951014,25951100-25951179,25951282-25951351,25951457-25951530,25951670-25951739,25951841-25951929,25952089-25952300,25952378-25952438,25952509-25952563,25952647-25952745,25952826-25952915,25953060-25953119,25953210-25953326	AT5G64940.1  CDS  gene_syn ATATH13, MXK3.17, MXK3_17  gene ATATH13  function Encodes a member of ATH subfamily of ATP-binding cassette (ABC) proteins.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process transport|GO:0006810|11346655|ISS  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  product ATATH13; transporter  note ATATH13; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ABC1 family protein (TAIR:AT3G07700.2); Has 7504 Blast hits to 7466 proteins in 1107 species: Archae - 69; Bacteria - 2645; Metazoa - 384; Fungi - 317; Plants - 354; Viruses - 14; Other Eukaryotes - 3721 (source: NCBI BLink).  protein_id AT5G64940.1p  transcript_id AT5G64940.1  protein_id AT5G64940.1p  transcript_id AT5G64940.1  
At5g64940	chr5:025949116	0.0	W/25949116-25949589,25949676-25949811,25949896-25950062,25950150-25950270,25950353-25950453,25950594-25950692,25950904-25951014,25951100-25951179,25951282-25951351,25951457-25951530,25951670-25951739,25951841-25951929,25952089-25952300,25952378-25952438,25952509-25952563,25952647-25952745,25952826-25952915,25953060-25953119,25953210-25953326	AT5G64940.2  CDS  gene_syn ATATH13, MXK3.17, MXK3_17  gene ATATH13  function Encodes a member of ATH subfamily of ATP-binding cassette (ABC) proteins.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process transport|GO:0006810|11346655|ISS  go_function transporter activity|GO:0005215|11346655|ISS  go_function transporter activity|GO:0005215||ISS  product ATATH13; transporter  note ATATH13; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ABC1 family protein (TAIR:AT3G07700.2); Has 7504 Blast hits to 7466 proteins in 1107 species: Archae - 69; Bacteria - 2645; Metazoa - 384; Fungi - 317; Plants - 354; Viruses - 14; Other Eukaryotes - 3721 (source: NCBI BLink).  protein_id AT5G64940.2p  transcript_id AT5G64940.2  protein_id AT5G64940.2p  transcript_id AT5G64940.2  
At5g64950	chr5:025953887	0.0	W/25953887-25955062	AT5G64950.1  CDS  gene_syn MXK3.18, MXK3_18  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial transcription termination factor-related / mTERF-related  note mitochondrial transcription termination factor-related / mTERF-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: mitochondrial transcription termination factor family protein / mTERF family protein (TAIR:AT5G07900.1); Has 527 Blast hits to 405 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 43; Fungi - 0; Plants - 480; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G64950.1p  transcript_id AT5G64950.1  protein_id AT5G64950.1p  transcript_id AT5G64950.1  
At5g64960	chr5:025955497	0.0	W/25955497-25955609,25956006-25956087,25956186-25956276,25956382-25956411,25956525-25956634,25956726-25956798,25956881-25957001,25957109-25957226,25957325-25957464,25957558-25957615,25957699-25957769,25957893-25958427	AT5G64960.1  CDS  gene_syn CDKC2, CDKC;2, Cyclin dependent kinase group C 2, Cyclin-dependent kinase C;2, MXK3.19, MXK3_19  gene CDKC2  function Encodes CDKC;2, part of a CDKC kinase complex that is targeted by Cauliflower mosaic virus (CaMV) for transcriptional activation of viral genes. Also regulates plant growth and development. Co-localizes with spliceosomal components in a manner dependent on the transcriptional status of the cells and on CDKC2-kinase activity. Expression of CDKC2 modifies the location of spliceosomal components.  go_component nucleus|GO:0005634|15610358|IDA  go_component spliceosome|GO:0005681|18208522|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component microtubule|GO:0005874|18208522|TAS  go_component nuclear body|GO:0016604|18208522|IDA  go_process mRNA processing|GO:0006397|18208522|IEP  go_process mRNA processing|GO:0006397|18208522|IMP  go_process response to virus|GO:0009615|17468259|IEP  go_process flower development|GO:0009908|17468259|IMP  go_process leaf development|GO:0048366|17468259|IGI  go_process carpel development|GO:0048440|17468259|IGI  go_process regulation of viral reproduction|GO:0050792|17468259|IMP  go_function kinase activity|GO:0016301|17468259|IDA  go_function kinase activity|GO:0016301||ISS  product CDKC2 (Cyclin dependent kinase group C 2); kinase  note Cyclin dependent kinase group C 2 (CDKC2); FUNCTIONS IN: kinase activity; INVOLVED IN: in 6 processes; LOCATED IN: cytosol, nuclear body, microtubule, nucleus, spliceosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: CDKC;1 (Cyclin-dependent kinase C;1); kinase (TAIR:AT5G10270.1); Has 100812 Blast hits to 95091 proteins in 3182 species: Archae - 40; Bacteria - 8767; Metazoa - 45769; Fungi - 9596; Plants - 18646; Viruses - 479; Other Eukaryotes - 17515 (source: NCBI BLink).  protein_id AT5G64960.1p  transcript_id AT5G64960.1  protein_id AT5G64960.1p  transcript_id AT5G64960.1  
At5g64960	chr5:025956150	0.0	W/25956150-25956276,25956382-25956411,25956525-25956634,25956726-25956798,25956881-25957001,25957109-25957226,25957325-25957464,25957558-25957615,25957699-25957769,25957893-25958427	AT5G64960.2  CDS  gene_syn CDKC2, CDKC;2, Cyclin dependent kinase group C 2, Cyclin-dependent kinase C;2, MXK3.19, MXK3_19  gene CDKC2  function Encodes CDKC;2, part of a CDKC kinase complex that is targeted by Cauliflower mosaic virus (CaMV) for transcriptional activation of viral genes. Also regulates plant growth and development. Co-localizes with spliceosomal components in a manner dependent on the transcriptional status of the cells and on CDKC2-kinase activity. Expression of CDKC2 modifies the location of spliceosomal components.  go_component nucleus|GO:0005634|15610358|IDA  go_component spliceosome|GO:0005681|18208522|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component microtubule|GO:0005874|18208522|TAS  go_component nuclear body|GO:0016604|18208522|IDA  go_process mRNA processing|GO:0006397|18208522|IEP  go_process mRNA processing|GO:0006397|18208522|IMP  go_process response to virus|GO:0009615|17468259|IEP  go_process flower development|GO:0009908|17468259|IMP  go_process leaf development|GO:0048366|17468259|IGI  go_process carpel development|GO:0048440|17468259|IGI  go_process regulation of viral reproduction|GO:0050792|17468259|IMP  go_function kinase activity|GO:0016301|17468259|IDA  go_function kinase activity|GO:0016301||ISS  product CDKC2 (Cyclin dependent kinase group C 2); kinase  note Cyclin dependent kinase group C 2 (CDKC2); FUNCTIONS IN: kinase activity; INVOLVED IN: in 6 processes; LOCATED IN: cytosol, nuclear body, microtubule, nucleus, spliceosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CDKC;1 (Cyclin-dependent kinase C;1); kinase (TAIR:AT5G10270.1); Has 93169 Blast hits to 87795 proteins in 2846 species: Archae - 31; Bacteria - 7699; Metazoa - 42163; Fungi - 9255; Plants - 17275; Viruses - 456; Other Eukaryotes - 16290 (source: NCBI BLink).  protein_id AT5G64960.2p  transcript_id AT5G64960.2  protein_id AT5G64960.2p  transcript_id AT5G64960.2  
At5g64970	chr5:025960007	0.0	C/25960007-25960443,25959528-25959831,25958973-25959440,25958806-25958883	AT5G64970.1  CDS  gene_syn MXK3.20, MXK3_20  go_process transport|GO:0006810||IEA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_component plastid|GO:0009536|16618929|IDA  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function transporter activity|GO:0005215||ISS  go_function binding|GO:0005488||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: transporter activity, binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrion, mitochondrial inner membrane, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT1G78180.1); Has 18195 Blast hits to 9659 proteins in 353 species: Archae - 0; Bacteria - 0; Metazoa - 9099; Fungi - 4929; Plants - 2524; Viruses - 0; Other Eukaryotes - 1643 (source: NCBI BLink).  protein_id AT5G64970.1p  transcript_id AT5G64970.1  protein_id AT5G64970.1p  transcript_id AT5G64970.1  
At5g64980	chr5:025962953	0.0	C/25962953-25963000,25962472-25962637,25962078-25962349,25961899-25961976,25961697-25961813,25961561-25961626,25961386-25961454,25961188-25961247,25960947-25961105	AT5G64980.1  CDS  gene_syn MXK3.21, MXK3_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02880.1); Has 115 Blast hits to 115 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 111; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G64980.1p  transcript_id AT5G64980.1  protein_id AT5G64980.1p  transcript_id AT5G64980.1  
At5g64990	chr5:025964682	0.0	C/25964682-25964792,25964372-25964442,25964178-25964266,25963975-25964086,25963790-25963880,25963562-25963708	AT5G64990.1  CDS  gene_syn Arabidopsis Rab GTPase homolog H1a, AtRABH1a, MXK3.22, MXK3_22  gene AtRABH1a  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function GTP binding|GO:0005525||ISS  product AtRABH1a (Arabidopsis Rab GTPase homolog H1a); GTP binding  note Arabidopsis Rab GTPase homolog H1a (AtRABH1a); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab6-related (InterPro:IPR015600); BEST Arabidopsis thaliana protein match is: AtRABH1e (Arabidopsis Rab GTPase homolog H1e); GTP binding (TAIR:AT5G10260.1); Has 20677 Blast hits to 20650 proteins in 589 species: Archae - 19; Bacteria - 94; Metazoa - 11535; Fungi - 2391; Plants - 1785; Viruses - 19; Other Eukaryotes - 4834 (source: NCBI BLink).  protein_id AT5G64990.1p  transcript_id AT5G64990.1  protein_id AT5G64990.1p  transcript_id AT5G64990.1  
At5g65000	chr5:025967189	0.0	C/25967189-25967307,25966547-25966595,25966229-25966455,25965769-25965967,25965496-25965684	AT5G65000.2  CDS  gene_syn MXK3.23, MXK3_23  go_component Golgi membrane|GO:0000139||IEA  go_component integral to membrane|GO:0016021||IEA  go_process carbohydrate transport|GO:0008643||IEA  go_function sugar:hydrogen symporter activity|GO:0005351||IEA  go_process nucleotide-sugar transport|GO:0015780||ISS  go_function nucleotide-sugar transmembrane transporter activity|GO:0005338||ISS  product nucleotide-sugar transporter family protein  note nucleotide-sugar transporter family protein; FUNCTIONS IN: nucleotide-sugar transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: carbohydrate transport, nucleotide-sugar transport; LOCATED IN: integral to membrane, Golgi membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide-sugar transporter (InterPro:IPR007271); Has 569 Blast hits to 564 proteins in 118 species: Archae - 2; Bacteria - 2; Metazoa - 346; Fungi - 58; Plants - 99; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT5G65000.2p  transcript_id AT5G65000.2  protein_id AT5G65000.2p  transcript_id AT5G65000.2  
At5g65000	chr5:025967189	0.0	C/25967189-25967307,25966547-25966595,25966229-25966455,25965769-25965967,25965541-25965684,25965369-25965443,25965123-25965287	AT5G65000.1  CDS  gene_syn MXK3.23, MXK3_23  go_component Golgi membrane|GO:0000139||IEA  go_component integral to membrane|GO:0016021||IEA  go_process carbohydrate transport|GO:0008643||IEA  go_function sugar:hydrogen symporter activity|GO:0005351||IEA  go_process nucleotide-sugar transport|GO:0015780||ISS  go_function nucleotide-sugar transmembrane transporter activity|GO:0005338||ISS  product nucleotide-sugar transporter family protein  note nucleotide-sugar transporter family protein; FUNCTIONS IN: nucleotide-sugar transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: carbohydrate transport, nucleotide-sugar transport; LOCATED IN: integral to membrane, Golgi membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide-sugar transporter (InterPro:IPR007271); Has 739 Blast hits to 732 proteins in 120 species: Archae - 2; Bacteria - 2; Metazoa - 423; Fungi - 72; Plants - 148; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).  protein_id AT5G65000.1p  transcript_id AT5G65000.1  protein_id AT5G65000.1p  transcript_id AT5G65000.1  
At5g65005	chr5:025967824	0.0	W/25967824-25968615	AT5G65005.1  CDS  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: thioredoxin family protein (TAIR:AT1G52990.1).  protein_id AT5G65005.1p  transcript_id AT5G65005.1  protein_id AT5G65005.1p  transcript_id AT5G65005.1  
At5g65010	chr5:025969224	0.0	W/25969224-25969303,25969480-25969618,25969742-25969837,25969984-25970125,25970231-25970326,25970446-25970540,25970656-25970817,25970901-25970981,25971076-25971297,25971377-25971592,25971708-25971794,25971877-25971984,25972063-25972278	AT5G65010.2  CDS  gene_syn ASN2, ASPARAGINE SYNTHETASE 2, MXK3.25, MXK3_25  gene ASN2  function Encodes asparagine synthetase (ASN2).  go_process asparagine biosynthetic process|GO:0006529||IEA  go_process metabolic process|GO:0008152||IEA  go_function asparagine synthase (glutamine-hydrolyzing) activity|GO:0004066||IEA  go_process asparagine biosynthetic process|GO:0006529||ISS  go_function asparagine synthase (glutamine-hydrolyzing) activity|GO:0004066||ISS  product ASN2 (ASPARAGINE SYNTHETASE 2); asparagine synthase (glutamine-hydrolyzing)  note ASPARAGINE SYNTHETASE 2 (ASN2); FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity; INVOLVED IN: asparagine biosynthetic process, metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase, class-II (InterPro:IPR000583), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Asparagine synthase (InterPro:IPR001962), Glutamine amidotransferase, type II (InterPro:IPR017932), Asparagine synthase, glutamine-hydrolyzing (InterPro:IPR006426); BEST Arabidopsis thaliana protein match is: ASN3 (ASPARAGINE SYNTHETASE 3); asparagine synthase (glutamine-hydrolyzing) (TAIR:AT5G10240.1); Has 8627 Blast hits to 8461 proteins in 1298 species: Archae - 231; Bacteria - 4293; Metazoa - 195; Fungi - 161; Plants - 286; Viruses - 7; Other Eukaryotes - 3454 (source: NCBI BLink).  protein_id AT5G65010.2p  transcript_id AT5G65010.2  protein_id AT5G65010.2p  transcript_id AT5G65010.2  
At5g65010	chr5:025969224	0.0	W/25969224-25969303,25969480-25969618,25969742-25969837,25969984-25970125,25970231-25970326,25970446-25970540,25970656-25970817,25970901-25970981,25971076-25971297,25971377-25971592,25971708-25971794,25971877-25971984,25972066-25972278	AT5G65010.1  CDS  gene_syn ASN2, ASPARAGINE SYNTHETASE 2, MXK3.25, MXK3_25  gene ASN2  function Encodes asparagine synthetase (ASN2).  go_process asparagine biosynthetic process|GO:0006529||IEA  go_process metabolic process|GO:0008152||IEA  go_function asparagine synthase (glutamine-hydrolyzing) activity|GO:0004066||IEA  go_process asparagine biosynthetic process|GO:0006529||ISS  go_function asparagine synthase (glutamine-hydrolyzing) activity|GO:0004066||ISS  product ASN2 (ASPARAGINE SYNTHETASE 2); asparagine synthase (glutamine-hydrolyzing)  note ASPARAGINE SYNTHETASE 2 (ASN2); FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity; INVOLVED IN: asparagine biosynthetic process, metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamine amidotransferase, class-II (InterPro:IPR000583), Asparagine synthase (InterPro:IPR001962), Asparagine synthase, glutamine-hydrolyzing (InterPro:IPR006426), Glutamine amidotransferase, type II (InterPro:IPR017932); BEST Arabidopsis thaliana protein match is: ASN3 (ASPARAGINE SYNTHETASE 3); asparagine synthase (glutamine-hydrolyzing) (TAIR:AT5G10240.1); Has 8629 Blast hits to 8461 proteins in 1298 species: Archae - 231; Bacteria - 4295; Metazoa - 195; Fungi - 161; Plants - 286; Viruses - 7; Other Eukaryotes - 3454 (source: NCBI BLink).  protein_id AT5G65010.1p  transcript_id AT5G65010.1  protein_id AT5G65010.1p  transcript_id AT5G65010.1  
At5g65015	chr5:025972678	0.0	W/25972678-25972750	AT5G65015.1  tRNA  gene_syn 67921.TRNA-ARG-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: ACG)  transcript_id AT5G65015.1  
At5g65020	chr5:025973915	0.0	W/25973915-25973990,25974397-25974542,25974650-25974868,25974957-25975169,25975255-25975554	AT5G65020.1  CDS  gene_syn ANNAT2, ANNEXIN, ANNEXIN A2, Annexin Arabidopsis 2, MXK3.27, MXK3_27  gene ANNAT2  function Annexins are calcium binding proteins that are localized in the cytoplasm. When cytosolic Ca2+ increases, they relocate to the plasma membrane. They may be involved in the Golgi-mediated secretion of polysaccharides.  go_component thylakoid|GO:0009579|11826309|IDA  go_function calcium ion binding|GO:0005509||IEA  go_function calcium-dependent phospholipid binding|GO:0005544||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component cell surface|GO:0009986||NAS  go_process polysaccharide transport|GO:0015774|15368128|TAS  go_function calcium ion binding|GO:0005509||ISS  go_function calcium-dependent phospholipid binding|GO:0005544||ISS  product ANNAT2 (Annexin Arabidopsis 2); calcium ion binding / calcium-dependent phospholipid binding  note Annexin Arabidopsis 2 (ANNAT2); FUNCTIONS IN: calcium-dependent phospholipid binding, calcium ion binding; INVOLVED IN: polysaccharide transport; LOCATED IN: cytosol, thylakoid, nucleus, cell surface; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Annexin like protein (InterPro:IPR015472), Annexin repeat (InterPro:IPR018502), Annexin repeat, conserved site (InterPro:IPR018252), Annexin (InterPro:IPR001464), Annexin, type plant (InterPro:IPR009118); BEST Arabidopsis thaliana protein match is: ANNAT7 (ANNEXIN ARABIDOPSIS 7); calcium ion binding / calcium-dependent phospholipid binding (TAIR:AT5G10230.1); Has 2873 Blast hits to 1810 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 2258; Fungi - 134; Plants - 313; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).  protein_id AT5G65020.1p  transcript_id AT5G65020.1  protein_id AT5G65020.1p  transcript_id AT5G65020.1  
At5g65020	chr5:025974366	0.0	W/25974366-25974542,25974650-25974868,25974957-25975169,25975255-25975554	AT5G65020.2  CDS  gene_syn ANNAT2, ANNEXIN, ANNEXIN A2, Annexin Arabidopsis 2, MXK3.27, MXK3_27  gene ANNAT2  function Annexins are calcium binding proteins that are localized in the cytoplasm. When cytosolic Ca2+ increases, they relocate to the plasma membrane. They may be involved in the Golgi-mediated secretion of polysaccharides.  go_function calcium ion binding|GO:0005509||IEA  go_function calcium-dependent phospholipid binding|GO:0005544||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component cell surface|GO:0009986||NAS  go_process polysaccharide transport|GO:0015774|15368128|TAS  go_function calcium ion binding|GO:0005509||ISS  go_function calcium-dependent phospholipid binding|GO:0005544||ISS  product ANNAT2 (Annexin Arabidopsis 2); calcium ion binding / calcium-dependent phospholipid binding  note Annexin Arabidopsis 2 (ANNAT2); FUNCTIONS IN: calcium-dependent phospholipid binding, calcium ion binding; INVOLVED IN: polysaccharide transport; LOCATED IN: cytosol, nucleus, cell surface; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Annexin like protein (InterPro:IPR015472), Annexin repeat (InterPro:IPR018502), Annexin repeat, conserved site (InterPro:IPR018252), Annexin (InterPro:IPR001464), Annexin, type plant (InterPro:IPR009118); BEST Arabidopsis thaliana protein match is: ANNAT7 (ANNEXIN ARABIDOPSIS 7); calcium ion binding / calcium-dependent phospholipid binding (TAIR:AT5G10230.1).  protein_id AT5G65020.2p  transcript_id AT5G65020.2  protein_id AT5G65020.2p  transcript_id AT5G65020.2  
At5g65030	chr5:025975697	0.0	C/25975697-25976305	AT5G65030.1  CDS  gene_syn MXK3.28, MXK3_28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10210.1); Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G65030.1p  transcript_id AT5G65030.1  protein_id AT5G65030.1p  transcript_id AT5G65030.1  
At5g65040	chr5:025978118	0.0	C/25978118-25978350,25977864-25977972	AT5G65040.1  CDS  gene_syn MXK3.29, MXK3_29  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product senescence-associated protein-related  note senescence-associated protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: senescence-associated protein-related (TAIR:AT1G22160.1); Has 261 Blast hits to 261 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 261; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G65040.1p  transcript_id AT5G65040.1  protein_id AT5G65040.1p  transcript_id AT5G65040.1  
At5g65050	chr5:025982415	0.0	W/25982415-25982599,25984681-25984738,25984941-25985002,25985089-25985188,25985303-25985344,25985654-25985695,25986013-25986114	AT5G65050.3  CDS  gene_syn AGAMOUS LIKE MADS-BOX PROTEIN 31, AGL31, MADS AFFECTING FLOWERING 2, MAF2, MXK3.30, MXK3_30  gene AGL31  function Originally published as Agamous like MADS-box protein AGL31. One of a group of MADS box genes involved in control of flowering time. Four variant sequences have been identified for this locus but have not been characterized for differences in expression pattern and/or function.  go_process regulation of transcription, DNA-dependent|GO:0006355|11115127|ISS  go_process negative regulation of flower development|GO:0009910|12724541|IMP  go_process vernalization response|GO:0010048|12724541|IMP  go_process negative regulation of vernalization response|GO:0010221|12724541|IMP  go_process regulation of transcription|GO:0045449|11115127|TAS  go_function transcription factor activity|GO:0003700|11115127|ISS  go_function transcription factor activity|GO:0003700|11115127|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL31 (AGAMOUS LIKE MADS-BOX PROTEIN 31); transcription factor  note AGAMOUS LIKE MADS-BOX PROTEIN 31 (AGL31); FUNCTIONS IN: transcription factor activity; INVOLVED IN: negative regulation of vernalization response, negative regulation of flower development, vernalization response, regulation of transcription, DNA-dependent, regulation of transcription; EXPRESSED IN: 7 plant structures; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: MAF3 (MADS AFFECTING FLOWERING 3); transcription factor (TAIR:AT5G65060.1); Has 4803 Blast hits to 4799 proteins in 635 species: Archae - 0; Bacteria - 0; Metazoa - 547; Fungi - 203; Plants - 4000; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT5G65050.3p  transcript_id AT5G65050.3  protein_id AT5G65050.3p  transcript_id AT5G65050.3  
At5g65050	chr5:025982415	0.0	W/25982415-25982599,25984681-25984738,25984941-25985002,25985089-25985188,25985303-25985344,25985654-25985743	AT5G65050.2  CDS  gene_syn AGAMOUS LIKE MADS-BOX PROTEIN 31, AGL31, MADS AFFECTING FLOWERING 2, MAF2, MXK3.30, MXK3_30  gene AGL31  function Originally published as Agamous like MADS-box protein AGL31. One of a group of MADS box genes involved in control of flowering time. Four variant sequences have been identified for this locus but have not been characterized for differences in expression pattern and/or function.  go_process regulation of transcription, DNA-dependent|GO:0006355|11115127|ISS  go_process negative regulation of flower development|GO:0009910|12724541|IMP  go_process vernalization response|GO:0010048|12724541|IMP  go_process negative regulation of vernalization response|GO:0010221|12724541|IMP  go_process regulation of transcription|GO:0045449|11115127|TAS  go_function transcription factor activity|GO:0003700|11115127|ISS  go_function transcription factor activity|GO:0003700|11115127|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL31 (AGAMOUS LIKE MADS-BOX PROTEIN 31); transcription factor  note AGAMOUS LIKE MADS-BOX PROTEIN 31 (AGL31); FUNCTIONS IN: transcription factor activity; INVOLVED IN: negative regulation of vernalization response, negative regulation of flower development, vernalization response, regulation of transcription, DNA-dependent, regulation of transcription; EXPRESSED IN: 7 plant structures; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: MAF3 (MADS AFFECTING FLOWERING 3); transcription factor (TAIR:AT5G65060.1); Has 4806 Blast hits to 4802 proteins in 636 species: Archae - 0; Bacteria - 0; Metazoa - 547; Fungi - 203; Plants - 4001; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT5G65050.2p  transcript_id AT5G65050.2  protein_id AT5G65050.2p  transcript_id AT5G65050.2  
At5g65050	chr5:025982415	0.0	W/25982415-25982599,25984681-25984738,25984941-25985002,25985089-25985188,25985303-25985344,25986013-25986114	AT5G65050.1  CDS  gene_syn AGAMOUS LIKE MADS-BOX PROTEIN 31, AGL31, MADS AFFECTING FLOWERING 2, MAF2, MXK3.30, MXK3_30  gene AGL31  function Originally published as Agamous like MADS-box protein AGL31. One of a group of MADS box genes involved in control of flowering time. Four variant sequences have been identified for this locus but have not been characterized for differences in expression pattern and/or function.  go_component nucleus|GO:0005634|14617066|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|11115127|ISS  go_process negative regulation of flower development|GO:0009910|12724541|IMP  go_process vernalization response|GO:0010048|12724541|IMP  go_process negative regulation of vernalization response|GO:0010221|12724541|IMP  go_process regulation of transcription|GO:0045449|11115127|TAS  go_function transcription factor activity|GO:0003700|11115127|ISS  go_function transcription factor activity|GO:0003700|11115127|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL31 (AGAMOUS LIKE MADS-BOX PROTEIN 31); transcription factor  note AGAMOUS LIKE MADS-BOX PROTEIN 31 (AGL31); FUNCTIONS IN: transcription factor activity; INVOLVED IN: negative regulation of vernalization response, negative regulation of flower development, vernalization response, regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: MAF3 (MADS AFFECTING FLOWERING 3); transcription factor (TAIR:AT5G65060.1); Has 4587 Blast hits to 4586 proteins in 591 species: Archae - 0; Bacteria - 0; Metazoa - 547; Fungi - 203; Plants - 3784; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT5G65050.1p  transcript_id AT5G65050.1  protein_id AT5G65050.1p  transcript_id AT5G65050.1  
At5g65060	chr5:025987527	0.0	W/25987527-25987711,25989671-25989728,25989942-25990003,25990084-25990183,25990284-25990325,25990614-25990655,25990964-25991065	AT5G65060.1  CDS  gene_syn AGAMOUS-LIKE 70, AGL70, F15O5.2, F15O5_2, FCL3, MADS AFFECTING FLOWERING 3, MAF3  gene MAF3  function MADS domain protein - flowering regulator that is closely related to FLC  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|11115127|ISS  go_process negative regulation of flower development|GO:0009910|12724541|IMP  go_process vernalization response|GO:0010048|12724541|IEP  go_function transcription factor activity|GO:0003700|11115127|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12724541|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product MAF3 (MADS AFFECTING FLOWERING 3); transcription factor  note MADS AFFECTING FLOWERING 3 (MAF3); FUNCTIONS IN: transcription factor activity; INVOLVED IN: negative regulation of flower development, vernalization response, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGL31 (AGAMOUS LIKE MADS-BOX PROTEIN 31); transcription factor (TAIR:AT5G65050.3); Has 4876 Blast hits to 4872 proteins in 631 species: Archae - 0; Bacteria - 0; Metazoa - 548; Fungi - 201; Plants - 4078; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT5G65060.1p  transcript_id AT5G65060.1  protein_id AT5G65060.1p  transcript_id AT5G65060.1  
At5g65060	chr5:025987527	0.0	W/25987527-25987711,25989671-25989728,25989942-25990003,25990117-25990183,25990284-25990325,25990614-25990655,25990964-25991065	AT5G65060.2  CDS  gene_syn AGAMOUS-LIKE 70, AGL70, F15O5.2, F15O5_2, FCL3, MADS AFFECTING FLOWERING 3, MAF3  gene MAF3  function MADS domain protein - flowering regulator that is closely related to FLC  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|11115127|ISS  go_process negative regulation of flower development|GO:0009910|12724541|IMP  go_process vernalization response|GO:0010048|12724541|IEP  go_function transcription factor activity|GO:0003700|11115127|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12724541|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product MAF3 (MADS AFFECTING FLOWERING 3); transcription factor  note MADS AFFECTING FLOWERING 3 (MAF3); FUNCTIONS IN: transcription factor activity; INVOLVED IN: negative regulation of flower development, vernalization response, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGL31 (AGAMOUS LIKE MADS-BOX PROTEIN 31); transcription factor (TAIR:AT5G65050.3); Has 4615 Blast hits to 4613 proteins in 599 species: Archae - 0; Bacteria - 0; Metazoa - 548; Fungi - 201; Plants - 3819; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT5G65060.2p  transcript_id AT5G65060.2  protein_id AT5G65060.2p  transcript_id AT5G65060.2  
At5g65070	chr5:025992310	0.0	W/25992310-25992494,25994433-25994490,25994606-25994698,25995047-25995108,25995198-25995297,25995425-25995466,25995666-25995716,25995826-25995930	AT5G65070.2  CDS  gene_syn AGL69, F15O5.3, F15O5_3, FCL4, MADS AFFECTING FLOWERING 4, MAF4  gene MAF4  function Encodes MADS-box containing FLC paralog. Five splice variants have been identified but not characterized with respect to expression patterns and/or differing function. Overexpression of the gene in the Landsberg ecotype leads to a delay in flowering, transcript levels of MAF4 are reduced after a 6 week vernalization.  go_process negative regulation of flower development|GO:0009910|12724541|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12724541|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product MAF4 (MADS AFFECTING FLOWERING 4); transcription factor  note MADS AFFECTING FLOWERING 4 (MAF4); FUNCTIONS IN: transcription factor activity; INVOLVED IN: negative regulation of flower development; EXPRESSED IN: cotyledon, hypocotyl; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: MAF5 (MADS AFFECTING FLOWERING 5); transcription factor (TAIR:AT5G65080.1); Has 4812 Blast hits to 4810 proteins in 618 species: Archae - 0; Bacteria - 20; Metazoa - 558; Fungi - 210; Plants - 3969; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT5G65070.2p  transcript_id AT5G65070.2  protein_id AT5G65070.2p  transcript_id AT5G65070.2  
At5g65070	chr5:025992310	0.0	W/25992310-25992494,25994433-25994490,25995047-25995108,25995198-25995297,25995425-25995466,25995666-25995716,25995826-25995930	AT5G65070.1  CDS  gene_syn AGL69, F15O5.3, F15O5_3, FCL4, MADS AFFECTING FLOWERING 4, MAF4  gene MAF4  function Encodes MADS-box containing FLC paralog. Five splice variants have been identified but not characterized with respect to expression patterns and/or differing function. Overexpression of the gene in the Landsberg ecotype leads to a delay in flowering, transcript levels of MAF4 are reduced after a 6 week vernalization.  go_component plasma membrane|GO:0005886|14506206|IDA  go_process negative regulation of flower development|GO:0009910|12724541|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12724541|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product MAF4 (MADS AFFECTING FLOWERING 4); transcription factor  note AGL69; FUNCTIONS IN: transcription factor activity; INVOLVED IN: negative regulation of flower development; LOCATED IN: plasma membrane; EXPRESSED IN: cotyledon, hypocotyl; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: MAF5 (MADS AFFECTING FLOWERING 5); transcription factor (TAIR:AT5G65080.1); Has 5011 Blast hits to 5008 proteins in 653 species: Archae - 0; Bacteria - 13; Metazoa - 558; Fungi - 210; Plants - 4173; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT5G65070.1p  transcript_id AT5G65070.1  protein_id AT5G65070.1p  transcript_id AT5G65070.1  
At5g65080	chr5:025997650	0.0	W/25997650-25997855,26000267-26000324,26000866-26000927,26001022-26001121,26001244-26001285,26001588-26001629,26002104-26002211	AT5G65080.1  CDS  gene_syn AGL68, F15O5.4, F15O5_4, MADS AFFECTING FLOWERING 5, MAF5  gene MAF5  function Is upregulated during vernalization and regulates flowering time. Encodes MADS-domain protein. Two variants encoding proteins of 198 and 184 amino acids have been reported.  go_component nucleus|GO:0005634||IEA  go_process negative regulation of flower development|GO:0009910|12724541|IMP  go_process vernalization response|GO:0010048|12724541|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12724541|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product MAF5 (MADS AFFECTING FLOWERING 5); transcription factor  note MADS AFFECTING FLOWERING 5 (MAF5); FUNCTIONS IN: transcription factor activity; INVOLVED IN: negative regulation of flower development, vernalization response; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, LP.02 two leaves visible, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: MAF4 (MADS AFFECTING FLOWERING 4); transcription factor (TAIR:AT5G65070.1); Has 4922 Blast hits to 4918 proteins in 647 species: Archae - 0; Bacteria - 10; Metazoa - 561; Fungi - 203; Plants - 4097; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT5G65080.1p  transcript_id AT5G65080.1  protein_id AT5G65080.1p  transcript_id AT5G65080.1  
At5g65080	chr5:025997671	0.0	W/25997671-25997855,26000811-26000927,26001022-26001121,26001244-26001285,26001588-26001629,26002104-26002211	AT5G65080.2  CDS  gene_syn AGL68, F15O5.4, F15O5_4, MADS AFFECTING FLOWERING 5, MAF5  gene MAF5  function Is upregulated during vernalization and regulates flowering time. Encodes MADS-domain protein. Two variants encoding proteins of 198 and 184 amino acids have been reported.  go_component nucleus|GO:0005634||IEA  go_process negative regulation of flower development|GO:0009910|12724541|IMP  go_process vernalization response|GO:0010048|12724541|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12724541|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product MAF5 (MADS AFFECTING FLOWERING 5); transcription factor  note MADS AFFECTING FLOWERING 5 (MAF5); FUNCTIONS IN: transcription factor activity; INVOLVED IN: negative regulation of flower development, vernalization response; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, LP.02 two leaves visible, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: MAF4 (MADS AFFECTING FLOWERING 4); transcription factor (TAIR:AT5G65070.1); Has 4731 Blast hits to 4726 proteins in 605 species: Archae - 0; Bacteria - 0; Metazoa - 551; Fungi - 203; Plants - 3924; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT5G65080.2p  transcript_id AT5G65080.2  protein_id AT5G65080.2p  transcript_id AT5G65080.2  
At5g65090	chr5:026004282	0.0	W/26004282-26004336,26004427-26004504,26004781-26004868,26004939-26005635,26005715-26005908,26005992-26006100,26006182-26006330,26006437-26006656	AT5G65090.1  CDS  gene_syn BRISTLED 1, BST1, DEFORMED ROOT HAIRS 4, DER4, MQN23.2, MQN23_2, MRH3  gene BST1  function Encodes a protein involved in root hair morphogenesis and tip growth. Required for restricting both the size of the root-hair initiation site and the width of the root hairs during the transition to tip growth, but, apparently, is not required for normal subsequent tip growth.  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437||IEA  go_component cellular_component|GO:0005575||ND  go_process cell tip growth|GO:0009932|11041890|IMP  go_process root epidermal cell differentiation|GO:0010053|11041890|IMP  go_process root hair cell differentiation|GO:0048765|16367956|IMP  go_function hydrolase activity|GO:0016787||ISS  product BST1 (BRISTLED 1); hydrolase/ inositol or phosphatidylinositol phosphatase  note BRISTLED 1 (BST1); FUNCTIONS IN: hydrolase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: root epidermal cell differentiation, root hair cell differentiation, cell tip growth; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein (TAIR:AT5G04980.2); Has 1507 Blast hits to 1380 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 605; Fungi - 350; Plants - 321; Viruses - 0; Other Eukaryotes - 231 (source: NCBI BLink).  protein_id AT5G65090.1p  transcript_id AT5G65090.1  protein_id AT5G65090.1p  transcript_id AT5G65090.1  
At5g65090	chr5:026004837	0.0	W/26004837-26004868,26004939-26005635,26005715-26005908,26005992-26006100,26006182-26006330,26006437-26006656	AT5G65090.2  CDS  gene_syn BRISTLED 1, BST1, DEFORMED ROOT HAIRS 4, DER4, MQN23.2, MQN23_2, MRH3  gene BST1  function Encodes a protein involved in root hair morphogenesis and tip growth. Required for restricting both the size of the root-hair initiation site and the width of the root hairs during the transition to tip growth, but, apparently, is not required for normal subsequent tip growth.  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437||IEA  go_component cellular_component|GO:0005575||ND  go_process cell tip growth|GO:0009932|11041890|IMP  go_process root epidermal cell differentiation|GO:0010053|11041890|IMP  go_process root hair cell differentiation|GO:0048765|16367956|IMP  go_function hydrolase activity|GO:0016787||ISS  product BST1 (BRISTLED 1); hydrolase/ inositol or phosphatidylinositol phosphatase  note BRISTLED 1 (BST1); FUNCTIONS IN: hydrolase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: root epidermal cell differentiation, root hair cell differentiation, cell tip growth; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein (TAIR:AT5G04980.2); Has 1503 Blast hits to 1382 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 601; Fungi - 348; Plants - 323; Viruses - 0; Other Eukaryotes - 231 (source: NCBI BLink).  protein_id AT5G65090.2p  transcript_id AT5G65090.2  protein_id AT5G65090.2p  transcript_id AT5G65090.2  
At5g65100	chr5:026006835	0.0	C/26006835-26008508	AT5G65100.1  CDS  gene_syn MQN23.3, MQN23_3  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ethylene insensitive 3 family protein  note ethylene insensitive 3 family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ethylene insensitive 3 (InterPro:IPR006957); BEST Arabidopsis thaliana protein match is: ethylene insensitive 3 family protein (TAIR:AT5G10120.1); Has 233 Blast hits to 232 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 224; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G65100.1p  transcript_id AT5G65100.1  protein_id AT5G65100.1p  transcript_id AT5G65100.1  
At5g65110	chr5:026012028	0.0	C/26012028-26012482,26011771-26011886,26010803-26011683,26010546-26010725,26010289-26010455,26010060-26010201	AT5G65110.2  CDS  gene_syn ACX2, ACYL-COA OXIDASE 2, ATACX2, MQN23.4, MQN23_4  gene ACX2  function Encodes an acyl-CoA oxidase presumably involved in long chain fatty acid biosynthesis.  go_component peroxisome|GO:0005777|10571860|ISS  go_component peroxisome|GO:0005777||ISS  go_process long-chain fatty acid metabolic process|GO:0001676|10571860|IDA  go_process fatty acid beta-oxidation|GO:0006635|10571860|IDA  go_process fatty acid beta-oxidation|GO:0006635||ISS  go_function acyl-CoA oxidase activity|GO:0003997|10571860|IDA  go_function acyl-CoA oxidase activity|GO:0003997||ISS  product ACX2 (ACYL-COA OXIDASE 2); acyl-CoA oxidase  note ACYL-COA OXIDASE 2 (ACX2); FUNCTIONS IN: acyl-CoA oxidase activity; INVOLVED IN: fatty acid beta-oxidation, long-chain fatty acid metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal (InterPro:IPR013764), Acyl-CoA oxidase/dehydrogenase, type 1 (InterPro:IPR006090), Acyl-CoA dehydrogenase/oxidase, middle and N-terminal (InterPro:IPR009100), Acyl-CoA oxidase (InterPro:IPR012258), Acyl-CoA dehydrogenase/oxidase, central region (InterPro:IPR006091), Acyl-CoA oxidase, C-terminal (InterPro:IPR002655), Acyl-CoA dehydrogenase/oxidase C-terminal (InterPro:IPR009075); BEST Arabidopsis thaliana protein match is: ACX6 (ACYL-COA OXIDASE 6); FAD binding / acyl-CoA dehydrogenase/ acyl-CoA oxidase/ electron carrier/ oxidoreductase/ oxidoreductase, acting on the CH-CH group of donors (TAIR:AT1G06310.1); Has 10085 Blast hits to 10074 proteins in 860 species: Archae - 156; Bacteria - 5901; Metazoa - 1488; Fungi - 403; Plants - 189; Viruses - 0; Other Eukaryotes - 1948 (source: NCBI BLink).  protein_id AT5G65110.2p  transcript_id AT5G65110.2  protein_id AT5G65110.2p  transcript_id AT5G65110.2  
At5g65110	chr5:026012028	0.0	C/26012028-26012482,26011771-26011886,26010803-26011683,26010546-26010725,26010289-26010455,26010078-26010201,26009821-26009976	AT5G65110.1  CDS  gene_syn ACX2, ACYL-COA OXIDASE 2, ATACX2, MQN23.4, MQN23_4  gene ACX2  function Encodes an acyl-CoA oxidase presumably involved in long chain fatty acid biosynthesis.  go_component peroxisome|GO:0005777|10571860|ISS  go_component peroxisome|GO:0005777||ISS  go_process long-chain fatty acid metabolic process|GO:0001676|10571860|IDA  go_process fatty acid beta-oxidation|GO:0006635|10571860|IDA  go_process fatty acid beta-oxidation|GO:0006635||ISS  go_function acyl-CoA oxidase activity|GO:0003997|10571860|IDA  go_function acyl-CoA oxidase activity|GO:0003997||ISS  product ACX2 (ACYL-COA OXIDASE 2); acyl-CoA oxidase  note ACYL-COA OXIDASE 2 (ACX2); FUNCTIONS IN: acyl-CoA oxidase activity; INVOLVED IN: fatty acid beta-oxidation, long-chain fatty acid metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acyl-CoA oxidase/dehydrogenase, type 1 (InterPro:IPR006090), Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal (InterPro:IPR013764), Acyl-CoA dehydrogenase/oxidase, middle and N-terminal (InterPro:IPR009100), Acyl-CoA oxidase (InterPro:IPR012258), Acyl-CoA dehydrogenase/oxidase, central region (InterPro:IPR006091), Acyl-CoA oxidase, C-terminal (InterPro:IPR002655), Acyl-CoA dehydrogenase/oxidase C-terminal (InterPro:IPR009075); BEST Arabidopsis thaliana protein match is: ACX6 (ACYL-COA OXIDASE 6); FAD binding / acyl-CoA dehydrogenase/ acyl-CoA oxidase/ electron carrier/ oxidoreductase/ oxidoreductase, acting on the CH-CH group of donors (TAIR:AT1G06310.1); Has 10102 Blast hits to 10091 proteins in 861 species: Archae - 156; Bacteria - 5905; Metazoa - 1488; Fungi - 403; Plants - 195; Viruses - 0; Other Eukaryotes - 1955 (source: NCBI BLink).  protein_id AT5G65110.1p  transcript_id AT5G65110.1  protein_id AT5G65110.1p  transcript_id AT5G65110.1  
At5g65120	chr5:026013274	0.0	W/26013274-26013898,26014002-26014055,26014132-26014313,26014412-26014504	AT5G65120.1  CDS  gene_syn MQN23.5, MQN23_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10110.1); Has 42 Blast hits to 42 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 3; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G65120.1p  transcript_id AT5G65120.1  protein_id AT5G65120.1p  transcript_id AT5G65120.1  
At5g65130	chr5:026017403	0.0	W/26017403-26018236	AT5G65130.1  CDS  gene_syn MQN23.6, MQN23_6  function encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634|9192694|IC  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677|9192694|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9192694|ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT1G22190.1); Has 3752 Blast hits to 3694 proteins in 202 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 3729; Viruses - 3; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT5G65130.1p  transcript_id AT5G65130.1  protein_id AT5G65130.1p  transcript_id AT5G65130.1  
At5g65140	chr5:026021796	0.0	C/26021796-26022077,26021562-26021702,26021385-26021456,26021189-26021284,26021038-26021094,26020853-26020954,26020657-26020734,26020411-26020560	AT5G65140.2  CDS  gene_syn MQN23.7, MQN23_7  go_process response to cadmium ion|GO:0046686|17075075|IEP  go_function catalytic activity|GO:0003824||IEA  go_process trehalose biosynthetic process|GO:0005992||ISS  go_function trehalose-phosphatase activity|GO:0004805||ISS  product trehalose-6-phosphate phosphatase, putative  note trehalose-6-phosphate phosphatase, putative; FUNCTIONS IN: catalytic activity, trehalose-phosphatase activity; INVOLVED IN: response to cadmium ion, trehalose biosynthetic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: trehalose-6-phosphate phosphatase, putative (TAIR:AT5G10100.1); Has 1184 Blast hits to 1184 proteins in 425 species: Archae - 25; Bacteria - 607; Metazoa - 195; Fungi - 90; Plants - 185; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT5G65140.2p  transcript_id AT5G65140.2  protein_id AT5G65140.2p  transcript_id AT5G65140.2  
At5g65140	chr5:026021796	0.0	C/26021796-26022077,26021562-26021702,26021385-26021456,26021189-26021284,26021038-26021094,26020853-26020954,26020657-26020734,26020491-26020560,26020280-26020350,26020036-26020128,26019878-26019928	AT5G65140.1  CDS  gene_syn MQN23.7, MQN23_7  go_process response to cadmium ion|GO:0046686|17075075|IEP  go_function catalytic activity|GO:0003824||IEA  go_process trehalose biosynthetic process|GO:0005992||ISS  go_function trehalose-phosphatase activity|GO:0004805||ISS  product trehalose-6-phosphate phosphatase, putative  note trehalose-6-phosphate phosphatase, putative; FUNCTIONS IN: catalytic activity, trehalose-phosphatase activity; INVOLVED IN: response to cadmium ion, trehalose biosynthetic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: trehalose-6-phosphate phosphatase, putative (TAIR:AT5G10100.1); Has 1476 Blast hits to 1471 proteins in 516 species: Archae - 29; Bacteria - 757; Metazoa - 195; Fungi - 103; Plants - 278; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).  protein_id AT5G65140.1p  transcript_id AT5G65140.1  protein_id AT5G65140.1p  transcript_id AT5G65140.1  
At5g65158	chr5:026030390	0.0	W/26030390-26030704	AT5G65158.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976); BEST Arabidopsis thaliana protein match is: lipid-associated family protein (TAIR:AT2G22170.1); Has 83 Blast hits to 83 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G65158.1p  transcript_id AT5G65158.1  protein_id AT5G65158.1p  transcript_id AT5G65158.1  
At5g65160	chr5:026032722	0.0	C/26032722-26033668,26032282-26032650,26031674-26032007,26031457-26031588	AT5G65160.1  CDS  gene_syn MQN23.9, MQN23_9  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product tetratricopeptide repeat (TPR)-containing protein  note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT5G10090.1); Has 12195 Blast hits to 7361 proteins in 598 species: Archae - 415; Bacteria - 2850; Metazoa - 3545; Fungi - 998; Plants - 998; Viruses - 0; Other Eukaryotes - 3389 (source: NCBI BLink).  protein_id AT5G65160.1p  transcript_id AT5G65160.1  protein_id AT5G65160.1p  transcript_id AT5G65160.1  
At5g65165	chr5:026035745	0.0	C/26035745-26035922,26035543-26035658,26035223-26035461,26034782-26034991,26034515-26034701	AT5G65165.1  CDS  gene_syn SDH2-3  gene SDH2-3  function One of three isoforms of the iron-sulfur component of the succinate dehydrogenase complex, a component of the mitochondrial respiratory chain complex II. The product of the nuclear encoded gene is imported into the mitochondrion. Transcripts appear during seed maturation, persist through dessication, are abundant in dry seeds, and markedly decline during germination.  go_component mitochondrion|GO:0005739|11442063|IDA  go_component succinate dehydrogenase complex|GO:0045281|11442063|ISS  go_process mitochondrial electron transport, succinate to ubiquinone|GO:0006121|11442063|ISS  go_function succinate dehydrogenase activity|GO:0000104|11442063|ISS  go_function electron carrier activity|GO:0009055|11442063|ISS  product SDH2-3; electron carrier/ succinate dehydrogenase  note SDH2-3; FUNCTIONS IN: electron carrier activity, succinate dehydrogenase activity; INVOLVED IN: mitochondrial electron transport, succinate to ubiquinone; LOCATED IN: mitochondrion, succinate dehydrogenase complex; EXPRESSED DURING: 0 germination, seed development stages; CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), Fumarate reductase, C-terminal (InterPro:IPR012285), 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), 4Fe-4S ferredoxin, iron-sulpur binding domain (InterPro:IPR017896), 4Fe-4S ferredoxin, iron-sulphur binding, conserved site (InterPro:IPR017900), Alpha-helical ferredoxin (InterPro:IPR009051), Succinate dehydrogenase/fumarate reductase iron-sulphur protein (InterPro:IPR004489); BEST Arabidopsis thaliana protein match is: SDH2-2; electron carrier/ succinate dehydrogenase (TAIR:AT5G40650.1); Has 6501 Blast hits to 6499 proteins in 1260 species: Archae - 105; Bacteria - 3078; Metazoa - 226; Fungi - 122; Plants - 98; Viruses - 0; Other Eukaryotes - 2872 (source: NCBI BLink).  protein_id AT5G65165.1p  transcript_id AT5G65165.1  protein_id AT5G65165.1p  transcript_id AT5G65165.1  
At5g65166	chr5:026036291	0.0	C/26036291-26036494	AT5G65166.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G65166.1p  transcript_id AT5G65166.1  protein_id AT5G65166.1p  transcript_id AT5G65166.1  
At5g65170	chr5:026041218	0.0	W/26041218-26042306	AT5G65170.1  CDS  gene_syn MQN23.11, MQN23_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product VQ motif-containing protein  note VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT1G35830.1); Has 526 Blast hits to 388 proteins in 55 species: Archae - 0; Bacteria - 4; Metazoa - 107; Fungi - 43; Plants - 100; Viruses - 0; Other Eukaryotes - 272 (source: NCBI BLink).  protein_id AT5G65170.1p  transcript_id AT5G65170.1  protein_id AT5G65170.1p  transcript_id AT5G65170.1  
At5g65180	chr5:026045625	0.0	W/26045625-26045700,26045887-26046134,26046418-26046573,26046686-26046842,26046924-26047066,26047142-26047177,26047303-26047806	AT5G65180.1  CDS  gene_syn MQN23.12, MQN23_12  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), Regulation of nuclear pre-mRNA protein (InterPro:IPR006569), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10060.1); Has 3523 Blast hits to 3241 proteins in 333 species: Archae - 25; Bacteria - 251; Metazoa - 1575; Fungi - 421; Plants - 142; Viruses - 17; Other Eukaryotes - 1092 (source: NCBI BLink).  protein_id AT5G65180.1p  transcript_id AT5G65180.1  protein_id AT5G65180.1p  transcript_id AT5G65180.1  
At5g65180	chr5:026046478	0.0	W/26046478-26046573,26046686-26046842,26046924-26047066,26047142-26047177,26047303-26047806	AT5G65180.2  CDS  gene_syn MQN23.12, MQN23_12  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10060.1); Has 2443 Blast hits to 2224 proteins in 288 species: Archae - 20; Bacteria - 214; Metazoa - 904; Fungi - 298; Plants - 121; Viruses - 14; Other Eukaryotes - 872 (source: NCBI BLink).  protein_id AT5G65180.2p  transcript_id AT5G65180.2  protein_id AT5G65180.2p  transcript_id AT5G65180.2  
At5g65200	chr5:026048173	0.0	C/26048173-26049843	AT5G65200.1  CDS  gene_syn ARABIDOPSIS THALIANA PLANT U-BOX 38, ATPUB38, MQN23.13, MQN23_13, PLANT U-BOX 38, PUB38  gene PUB38  function Encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein ubiquitination|GO:0016567|14657406|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|14657406|IDA  product PUB38 (PLANT U-BOX 38); ubiquitin-protein ligase  note PLANT U-BOX 38 (PUB38); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein / U-box domain-containing protein (TAIR:AT5G62560.1); Has 1907 Blast hits to 1310 proteins in 133 species: Archae - 0; Bacteria - 2; Metazoa - 235; Fungi - 362; Plants - 1144; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).  protein_id AT5G65200.1p  transcript_id AT5G65200.1  protein_id AT5G65200.1p  transcript_id AT5G65200.1  
At5g65205	chr5:026051675	0.0	C/26051675-26052017,26051366-26051525,26050926-26051280	AT5G65205.1  CDS  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT5G10050.1); Has 80678 Blast hits to 80522 proteins in 2307 species: Archae - 457; Bacteria - 44708; Metazoa - 6289; Fungi - 4215; Plants - 1677; Viruses - 2; Other Eukaryotes - 23330 (source: NCBI BLink).  protein_id AT5G65205.1p  transcript_id AT5G65205.1  protein_id AT5G65205.1p  transcript_id AT5G65205.1  
At5g65207	chr5:026052364	0.0	C/26052364-26052585	AT5G65207.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10040.1); Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G65207.1p  transcript_id AT5G65207.1  protein_id AT5G65207.1p  transcript_id AT5G65207.1  
At5g65210	chr5:026059031	0.0	W/26059031-26059201,26059314-26059394,26059479-26059538,26059623-26059700,26059789-26059852,26059935-26060206,26060295-26060522,26060597-26060749	AT5G65210.1  CDS  gene_syn MQN23.15, MQN23_15, TGA1  gene TGA1  go_component nucleus|GO:0005634||IEA  go_process defense response to bacterium|GO:0042742|17369431|IMP  go_function DNA binding|GO:0003677|1446171|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  product TGA1; DNA binding / calmodulin binding / transcription factor  note TGA1; FUNCTIONS IN: transcription factor activity, calmodulin binding, DNA binding; INVOLVED IN: defense response to bacterium; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: TGA4 (TGACG MOTIF-BINDING FACTOR 4); DNA binding / calmodulin binding / transcription factor (TAIR:AT5G10030.1); Has 474 Blast hits to 473 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 439; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT5G65210.1p  transcript_id AT5G65210.1  protein_id AT5G65210.1p  transcript_id AT5G65210.1  
At5g65210	chr5:026059031	0.0	W/26059031-26059201,26059314-26059394,26059479-26059538,26059623-26059700,26059789-26059852,26059935-26060206,26060295-26060522,26060597-26060749	AT5G65210.2  CDS  gene_syn MQN23.15, MQN23_15, TGA1  gene TGA1  go_component nucleus|GO:0005634||IEA  go_process defense response to bacterium|GO:0042742|17369431|IMP  go_function DNA binding|GO:0003677|1446171|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  product TGA1; DNA binding / calmodulin binding / transcription factor  note TGA1; FUNCTIONS IN: transcription factor activity, calmodulin binding, DNA binding; INVOLVED IN: defense response to bacterium; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: TGA4 (TGACG MOTIF-BINDING FACTOR 4); DNA binding / calmodulin binding / transcription factor (TAIR:AT5G10030.1); Has 474 Blast hits to 473 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 439; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT5G65210.2p  transcript_id AT5G65210.2  protein_id AT5G65210.2p  transcript_id AT5G65210.2  
At5g65210	chr5:026059031	0.0	W/26059031-26059201,26059314-26059394,26059479-26059538,26059623-26059700,26059789-26059852,26059935-26060206,26060295-26060522,26060597-26060749	AT5G65210.3  CDS  gene_syn MQN23.15, MQN23_15, TGA1  gene TGA1  go_component nucleus|GO:0005634||IEA  go_process defense response to bacterium|GO:0042742|17369431|IMP  go_function DNA binding|GO:0003677|1446171|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  product TGA1; DNA binding / calmodulin binding / transcription factor  note TGA1; FUNCTIONS IN: transcription factor activity, calmodulin binding, DNA binding; INVOLVED IN: defense response to bacterium; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: TGA4 (TGACG MOTIF-BINDING FACTOR 4); DNA binding / calmodulin binding / transcription factor (TAIR:AT5G10030.1); Has 474 Blast hits to 473 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 439; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT5G65210.3p  transcript_id AT5G65210.3  protein_id AT5G65210.3p  transcript_id AT5G65210.3  
At5g65210	chr5:026059031	0.0	W/26059031-26059201,26059314-26059394,26059479-26059538,26059623-26059700,26059789-26059852,26059935-26060206,26060295-26060522,26060597-26060749	AT5G65210.4  CDS  gene_syn MQN23.15, MQN23_15, TGA1  gene TGA1  go_component nucleus|GO:0005634||IEA  go_process defense response to bacterium|GO:0042742|17369431|IMP  go_function DNA binding|GO:0003677|1446171|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  product TGA1; DNA binding / calmodulin binding / transcription factor  note TGA1; FUNCTIONS IN: transcription factor activity, calmodulin binding, DNA binding; INVOLVED IN: defense response to bacterium; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: TGA4 (TGACG MOTIF-BINDING FACTOR 4); DNA binding / calmodulin binding / transcription factor (TAIR:AT5G10030.1); Has 474 Blast hits to 473 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 439; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT5G65210.4p  transcript_id AT5G65210.4  protein_id AT5G65210.4p  transcript_id AT5G65210.4  
At5g65210	chr5:026059031	0.0	W/26059031-26059201,26059314-26059394,26059479-26059538,26059623-26059700,26059789-26059852,26059935-26060206,26060295-26060522,26060597-26060749	AT5G65210.5  CDS  gene_syn MQN23.15, MQN23_15, TGA1  gene TGA1  go_component nucleus|GO:0005634||IEA  go_process defense response to bacterium|GO:0042742|17369431|IMP  go_function DNA binding|GO:0003677|1446171|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  product TGA1; DNA binding / calmodulin binding / transcription factor  note TGA1; FUNCTIONS IN: transcription factor activity, calmodulin binding, DNA binding; INVOLVED IN: defense response to bacterium; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: TGA4 (TGACG MOTIF-BINDING FACTOR 4); DNA binding / calmodulin binding / transcription factor (TAIR:AT5G10030.1); Has 474 Blast hits to 473 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 439; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT5G65210.5p  transcript_id AT5G65210.5  protein_id AT5G65210.5p  transcript_id AT5G65210.5  
At5g65210	chr5:026059353	0.0	W/26059353-26059394,26059479-26059538,26059623-26059700,26059789-26059852,26059935-26060206,26060295-26060522,26060597-26060749	AT5G65210.6  CDS  gene_syn MQN23.15, MQN23_15, TGA1  gene TGA1  go_component nucleus|GO:0005634||IEA  go_process defense response to bacterium|GO:0042742|17369431|IMP  go_function DNA binding|GO:0003677|1446171|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  product TGA1; DNA binding / calmodulin binding / transcription factor  note TGA1; FUNCTIONS IN: transcription factor activity, calmodulin binding, DNA binding; INVOLVED IN: defense response to bacterium; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: TGA4 (TGACG MOTIF-BINDING FACTOR 4); DNA binding / calmodulin binding / transcription factor (TAIR:AT5G10030.1); Has 434 Blast hits to 433 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 411; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT5G65210.6p  transcript_id AT5G65210.6  protein_id AT5G65210.6p  transcript_id AT5G65210.6  
At5g65220	chr5:026061301	0.0	W/26061301-26061639,26062324-26062506	AT5G65220.1  CDS  gene_syn MQN23.16, MQN23_16  go_component nucleoid|GO:0009295|16326926|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L29 family protein  note ribosomal protein L29 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, chloroplast stroma, chloroplast, nucleoid, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L29 (InterPro:IPR001854), Ribosomal protein L29, conserved site (InterPro:IPR018254); Has 749 Blast hits to 747 proteins in 266 species: Archae - 0; Bacteria - 516; Metazoa - 5; Fungi - 12; Plants - 29; Viruses - 0; Other Eukaryotes - 187 (source: NCBI BLink).  protein_id AT5G65220.1p  transcript_id AT5G65220.1  protein_id AT5G65220.1p  transcript_id AT5G65220.1  
At5g65230	chr5:026068290	0.0	W/26068290-26068422,26068521-26068650,26068739-26069408	AT5G65230.1  CDS  gene_syn AtMYB53, MQN23.17, MQN23_17, myb domain protein 53  gene AtMYB53  function Member of the R2R3 factor gene family.  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product AtMYB53 (myb domain protein 53); DNA binding / transcription factor  note myb domain protein 53 (AtMYB53); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: ATMYB92 (MYB DOMAIN PROTEIN 92); DNA binding / transcription factor (TAIR:AT5G10280.1); Has 6392 Blast hits to 5911 proteins in 369 species: Archae - 0; Bacteria - 0; Metazoa - 641; Fungi - 310; Plants - 3823; Viruses - 3; Other Eukaryotes - 1615 (source: NCBI BLink).  protein_id AT5G65230.1p  transcript_id AT5G65230.1  protein_id AT5G65230.1p  transcript_id AT5G65230.1  
At5g65240	chr5:026077581	0.0	C/26077581-26077650,26077355-26077487,26077198-26077272,26076958-26077101,26076785-26076856,26076637-26076702,26076474-26076544,26076248-26076388,26075834-26076175,26075366-26075760,26074980-26075294	AT5G65240.1  CDS  gene_syn MQN23.19, MQN23_19  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product kinase  note kinase; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Adenovirus E3 region protein CR2 (InterPro:IPR003470), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / protein kinase family protein (TAIR:AT5G10290.1); Has 117171 Blast hits to 85305 proteins in 3030 species: Archae - 61; Bacteria - 9246; Metazoa - 38739; Fungi - 5725; Plants - 48020; Viruses - 402; Other Eukaryotes - 14978 (source: NCBI BLink).  protein_id AT5G65240.1p  transcript_id AT5G65240.1  protein_id AT5G65240.1p  transcript_id AT5G65240.1  
At5g65250	chr5:026079413	0.0	C/26079413-26080051,26079008-26079118,26078699-26078851	AT5G65250.1  CDS  gene_syn MQN23.20, MQN23_20  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 106 Blast hits to 106 proteins in 29 species: Archae - 0; Bacteria - 53; Metazoa - 35; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G65250.1p  transcript_id AT5G65250.1  protein_id AT5G65250.1p  transcript_id AT5G65250.1  
At5g65260	chr5:026082862	0.0	C/26082862-26082984,26082643-26082742,26082363-26082433,26080866-26081057,26080641-26080768,26080501-26080549	AT5G65260.1  CDS  gene_syn MQN23.21, MQN23_21  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product polyadenylate-binding protein family protein / PABP family protein  note polyadenylate-binding protein family protein / PABP family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: polyadenylate-binding protein family protein / PABP family protein (TAIR:AT5G10350.1); Has 5533 Blast hits to 5115 proteins in 414 species: Archae - 6; Bacteria - 543; Metazoa - 2461; Fungi - 1041; Plants - 837; Viruses - 0; Other Eukaryotes - 645 (source: NCBI BLink).  protein_id AT5G65260.1p  transcript_id AT5G65260.1  protein_id AT5G65260.1p  transcript_id AT5G65260.1  
At5g65270	chr5:026083437	0.0	W/26083437-26083669,26084103-26084550	AT5G65270.1  CDS  gene_syn Arabidopsis Rab GTPase homolog A4a, AtRABA4a, MQN23.22, MQN23_22  gene AtRABA4a  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_function GTP binding|GO:0005525||ISS  product AtRABA4a (Arabidopsis Rab GTPase homolog A4a); GTP binding  note Arabidopsis Rab GTPase homolog A4a (AtRABA4a); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RABA4B (RAB GTPASE HOMOLOG A4B); GTP binding (TAIR:AT4G39990.1); Has 23029 Blast hits to 22998 proteins in 639 species: Archae - 17; Bacteria - 108; Metazoa - 12691; Fungi - 2978; Plants - 2157; Viruses - 19; Other Eukaryotes - 5059 (source: NCBI BLink).  protein_id AT5G65270.1p  transcript_id AT5G65270.1  protein_id AT5G65270.1p  transcript_id AT5G65270.1  
At5g65274	chr5:026085300	0.0	W/26085300-26085397,26085476-26085548,26085639-26085739,26085825-26085960	AT5G65274.1  CDS  go_component cytoskeleton|GO:0005856||IEA  go_process regulation of actin filament polymerization|GO:0030833||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of actin filament polymerization; LOCATED IN: cytoskeleton; CONTAINS InterPro DOMAIN/s: ARP2/3 complex 16 kDa subunit (p16-Arc) (InterPro:IPR006789); BEST Arabidopsis thaliana protein match is: CRK (CROOKED); actin binding (TAIR:AT4G01710.1); Has 276 Blast hits to 276 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 212; Fungi - 39; Plants - 19; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G65274.1p  transcript_id AT5G65274.1  protein_id AT5G65274.1p  transcript_id AT5G65274.1  
At5g65280	chr5:026087893	0.0	C/26087893-26088069,26087596-26087798,26087179-26087290,26086794-26087020,26086129-26086711	AT5G65280.1  CDS  gene_syn GCL1, GCR2-LIKE 1, MQN23.23, MQN23_23  gene GCL1  function Encodes a protein with reported similarity to GCR2 a putative G protein coupled receptor thought to be an ABA receptor. Loss of function mutations in GCL1 show no ABA response defects based on assays of seed germination and seedling development.GCL1 also has similarity to LANCL1 and LANCL2, human homologs of bacterial lanthionine synthetase.  go_function catalytic activity|GO:0003824||IEA  go_component extrinsic to membrane|GO:0019898|17894782|ISS  go_process response to salt stress|GO:0009651|11351099|IEP  go_function catalytic activity|GO:0003824||ISS  product GCL1 (GCR2-LIKE 1); catalytic  note GCR2-LIKE 1 (GCL1); FUNCTIONS IN: catalytic activity; INVOLVED IN: response to salt stress; LOCATED IN: extrinsic to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase-like (InterPro:IPR008928), Lanthionine synthetase C-like (InterPro:IPR007822); BEST Arabidopsis thaliana protein match is: GPCR (G PROTEIN COUPLED RECEPTOR); abscisic acid binding / catalytic (TAIR:AT1G52920.1); Has 341 Blast hits to 336 proteins in 95 species: Archae - 0; Bacteria - 14; Metazoa - 228; Fungi - 31; Plants - 43; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT5G65280.1p  transcript_id AT5G65280.1  protein_id AT5G65280.1p  transcript_id AT5G65280.1  
At5g65290	chr5:026089814	0.0	W/26089814-26089981,26090500-26090588,26090908-26091066,26091296-26091509,26091801-26091887,26091970-26092109,26092240-26092320,26092437-26092501,26092660-26092835,26092966-26093096,26093175-26093256,26093363-26093576,26093666-26093766,26093843-26094337	AT5G65290.1  CDS  gene_syn MNA5.1, MNA5_1  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product LMBR1 integral membrane family protein  note LMBR1 integral membrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: LMBR1-like conserved region (InterPro:IPR006876); Has 274 Blast hits to 264 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 63; Plants - 34; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT5G65290.1p  transcript_id AT5G65290.1  protein_id AT5G65290.1p  transcript_id AT5G65290.1  
At5g65290	chr5:026089814	0.0	W/26089814-26089981,26090500-26090588,26090908-26091066,26091296-26091509,26091801-26091887,26091970-26092109,26092240-26092320,26092437-26092501,26092660-26092835,26092966-26093096,26093175-26093256,26093363-26093617	AT5G65290.2  CDS  gene_syn MNA5.1, MNA5_1  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product LMBR1 integral membrane family protein  note LMBR1 integral membrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: LMBR1-like conserved region (InterPro:IPR006876); Has 273 Blast hits to 263 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 63; Plants - 33; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT5G65290.2p  transcript_id AT5G65290.2  protein_id AT5G65290.2p  transcript_id AT5G65290.2  
At5g65300	chr5:026095266	0.0	C/26095266-26095718	AT5G65300.1  CDS  gene_syn MNA5.2, MNA5_2  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; Has 28 Blast hits to 28 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G65300.1p  transcript_id AT5G65300.1  protein_id AT5G65300.1p  transcript_id AT5G65300.1  
At5g65305	chr5:026097530	0.0	C/26097530-26097567	AT5G65305.1  tRNA  gene_syn 67923.TRNA-MET-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Met (anticodon: CAT)  transcript_id AT5G65305.1  
At5g65310	chr5:026103429	0.0	C/26103429-26103854,26102457-26102915	AT5G65310.2  CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 5, ATHB-5, ATHB5, MNA5.4, MNA5_4  gene ATHB5  function Encodes a class I HDZip (homeodomain-leucine zipper) protein that is a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to abscisic acid stimulus|GO:0009737|12678559|IDA  go_process response to abscisic acid stimulus|GO:0009737|12678559|IMP  go_process abscisic acid mediated signaling|GO:0009738|12678559|TAS  go_process regulation of abscisic acid mediated signaling|GO:0009787||NAS  go_process positive regulation of transcription|GO:0045941|16055682|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12678559|TAS  go_function transcription factor activity|GO:0003700|7948864|ISS  go_function transcription activator activity|GO:0016563|16055682|IDA  go_function protein homodimerization activity|GO:0042803|11247607|IDA  go_function sequence-specific DNA binding|GO:0043565|11247607|IDA  product ATHB5 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 5); protein homodimerization/ sequence-specific DNA binding / transcription activator/ transcription factor  note ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 5 (ATHB5); FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding, protein homodimerization activity, transcription activator activity; INVOLVED IN: positive regulation of transcription, abscisic acid mediated signaling, regulation of abscisic acid mediated signaling, response to abscisic acid stimulus, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ATHB16 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 16); sequence-specific DNA binding / transcription activator/ transcription factor (TAIR:AT4G40060.1); Has 8682 Blast hits to 8655 proteins in 491 species: Archae - 0; Bacteria - 4; Metazoa - 6982; Fungi - 142; Plants - 1399; Viruses - 5; Other Eukaryotes - 150 (source: NCBI BLink).  protein_id AT5G65310.2p  transcript_id AT5G65310.2  protein_id AT5G65310.2p  transcript_id AT5G65310.2  
At5g65310	chr5:026104151	0.0	C/26104151-26104217,26103429-26103841,26102457-26102915	AT5G65310.1  CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 5, ATHB-5, ATHB5, MNA5.4, MNA5_4  gene ATHB5  function Encodes a class I HDZip (homeodomain-leucine zipper) protein that is a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to abscisic acid stimulus|GO:0009737|12678559|IDA  go_process response to abscisic acid stimulus|GO:0009737|12678559|IMP  go_process abscisic acid mediated signaling|GO:0009738|12678559|TAS  go_process regulation of abscisic acid mediated signaling|GO:0009787||NAS  go_process positive regulation of transcription|GO:0045941|16055682|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12678559|TAS  go_function transcription factor activity|GO:0003700|7948864|ISS  go_function transcription activator activity|GO:0016563|16055682|IDA  go_function protein homodimerization activity|GO:0042803|11247607|IDA  go_function sequence-specific DNA binding|GO:0043565|11247607|IDA  product ATHB5 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 5); protein homodimerization/ sequence-specific DNA binding / transcription activator/ transcription factor  note ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 5 (ATHB5); FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding, protein homodimerization activity, transcription activator activity; INVOLVED IN: positive regulation of transcription, abscisic acid mediated signaling, regulation of abscisic acid mediated signaling, response to abscisic acid stimulus, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ATHB6; DNA binding / protein binding / sequence-specific DNA binding / transcription activator/ transcription factor (TAIR:AT2G22430.1); Has 8722 Blast hits to 8695 proteins in 491 species: Archae - 0; Bacteria - 4; Metazoa - 7022; Fungi - 142; Plants - 1399; Viruses - 5; Other Eukaryotes - 150 (source: NCBI BLink).  protein_id AT5G65310.1p  transcript_id AT5G65310.1  protein_id AT5G65310.1p  transcript_id AT5G65310.1  
At5g65320	chr5:026108242	0.0	C/26108242-26108640,26107616-26108017,26107368-26107457	AT5G65320.1  CDS  gene_syn MNA5.5, MNA5_5  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: hypocotyl, root, leaf; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (bHLH096) (TAIR:AT1G72210.1); Has 641 Blast hits to 636 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 18; Plants - 603; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G65320.1p  transcript_id AT5G65320.1  protein_id AT5G65320.1p  transcript_id AT5G65320.1  
At5g65330	chr5:026110326	0.0	W/26110326-26111351	AT5G65330.1  CDS  gene_syn AGAMOUS-LIKE 78, AGL78, MNA5.6, MNA5_6  gene AGL78  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL78 (AGAMOUS-LIKE 78); transcription factor  note AGAMOUS-LIKE 78 (AGL78); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL52; transcription factor (TAIR:AT4G11250.1); Has 580 Blast hits to 573 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 452; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).  protein_id AT5G65330.1p  transcript_id AT5G65330.1  protein_id AT5G65330.1p  transcript_id AT5G65330.1  
At5g65340	chr5:026113684	0.0	C/26113684-26114445	AT5G65340.1  CDS  gene_syn MNA5.7, MNA5_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF617, plant (InterPro:IPR006460); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G22460.1); Has 132 Blast hits to 132 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G65340.1p  transcript_id AT5G65340.1  protein_id AT5G65340.1p  transcript_id AT5G65340.1  
At5g65350	chr5:026119406	0.0	C/26119406-26119825	AT5G65350.1  CDS  gene_syn MNA5.8, MNA5_8  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product histone H3  note histone H3; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H3 (TAIR:AT5G65360.1); Has 10270 Blast hits to 10267 proteins in 5328 species: Archae - 0; Bacteria - 0; Metazoa - 7395; Fungi - 1305; Plants - 999; Viruses - 0; Other Eukaryotes - 571 (source: NCBI BLink).  protein_id AT5G65350.1p  transcript_id AT5G65350.1  protein_id AT5G65350.1p  transcript_id AT5G65350.1  
At5g65360	chr5:026120099	0.0	C/26120099-26120509	AT5G65360.1  CDS  gene_syn MNA5.9  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product histone H3  note histone H3; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, chloroplast, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H3 (TAIR:AT5G10400.1); Has 10280 Blast hits to 10277 proteins in 5329 species: Archae - 0; Bacteria - 0; Metazoa - 7396; Fungi - 1309; Plants - 999; Viruses - 0; Other Eukaryotes - 576 (source: NCBI BLink).  protein_id AT5G65360.1p  transcript_id AT5G65360.1  protein_id AT5G65360.1p  transcript_id AT5G65360.1  
At5g65370	chr5:026121708	0.0	W/26121708-26122156,26122311-26122749	AT5G65370.1  CDS  gene_syn MNA5.10, MNA5_10  go_function phospholipid binding|GO:0005543||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function binding|GO:0005488||ISS  product epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related  note epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related; FUNCTIONS IN: phospholipid binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (TAIR:AT5G10410.1); Has 84 Blast hits to 84 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G65370.1p  transcript_id AT5G65370.1  protein_id AT5G65370.1p  transcript_id AT5G65370.1  
At5g65380	chr5:026126077	0.0	C/26126077-26126352,26125702-26125989,26125242-26125495,26125069-26125155,26124772-26124828,26123772-26124010,26123576-26123694,26123387-26123476,26123241-26123291	AT5G65380.1  CDS  gene_syn MNA5.11, MNA5_11  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_process ripening|GO:0009835||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product ripening-responsive protein, putative  note ripening-responsive protein, putative; FUNCTIONS IN: antiporter activity, drug transporter activity, transporter activity; INVOLVED IN: multidrug transport, ripening; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: antiporter/ drug transporter (TAIR:AT5G10420.1); Has 4867 Blast hits to 4834 proteins in 1033 species: Archae - 65; Bacteria - 3083; Metazoa - 122; Fungi - 208; Plants - 721; Viruses - 0; Other Eukaryotes - 668 (source: NCBI BLink).  protein_id AT5G65380.1p  transcript_id AT5G65380.1  protein_id AT5G65380.1p  transcript_id AT5G65380.1  
At5g65390	chr5:026128883	0.0	C/26128883-26129275	AT5G65390.1  CDS  gene_syn AGP7, MNA5.12, MNA5_12  gene AGP7  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  product AGP7  note AGP7; LOCATED IN: anchored to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; Has 67907 Blast hits to 26759 proteins in 1358 species: Archae - 408; Bacteria - 17588; Metazoa - 17399; Fungi - 6154; Plants - 9463; Viruses - 2368; Other Eukaryotes - 14527 (source: NCBI BLink).  protein_id AT5G65390.1p  transcript_id AT5G65390.1  protein_id AT5G65390.1p  transcript_id AT5G65390.1  
At5g65400	chr5:026131448	0.0	W/26131448-26131726,26131885-26131983,26132081-26132122,26132352-26132496,26132741-26132842,26132971-26133062	AT5G65400.1  CDS  gene_syn MNA5.13, MNA5_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF341 (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24380.1); Has 479 Blast hits to 479 proteins in 121 species: Archae - 0; Bacteria - 2; Metazoa - 88; Fungi - 285; Plants - 66; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT5G65400.1p  transcript_id AT5G65400.1  protein_id AT5G65400.1p  transcript_id AT5G65400.1  
At5g65410	chr5:026136179	0.0	W/26136179-26137018	AT5G65410.1  CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 25, ATHB25, HB25, HOMEOBOX PROTEIN 25, MNA5.14, MNA5_14, ZFHD2, ZINC FINGER HOMEODOMAIN 2  gene HB25  function Encodes ZFHD2, a member of the zinc finger homeodomain transcriptional factor family.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||IEA  go_function transcription factor activity|GO:0003700||IEA  go_function transcription regulator activity|GO:0030528||IEA  go_function sequence-specific DNA binding|GO:0043565||IEA  go_function transcription factor activity|GO:0003700||ISS  product HB25 (HOMEOBOX PROTEIN 25); DNA binding / sequence-specific DNA binding / transcription factor/ transcription regulator  note HOMEOBOX PROTEIN 25 (HB25); FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding, transcription regulator activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein Cys/His-rich dimerisation region (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ATHB22 (HOMEOBOX PROTEIN 22); DNA binding / transcription factor (TAIR:AT4G24660.1); Has 987 Blast hits to 731 proteins in 131 species: Archae - 4; Bacteria - 32; Metazoa - 196; Fungi - 67; Plants - 621; Viruses - 6; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT5G65410.1p  transcript_id AT5G65410.1  protein_id AT5G65410.1p  transcript_id AT5G65410.1  
At5g65420	chr5:026143490	0.0	C/26143490-26143750,26143097-26143183,26142896-26142994,26142600-26142804,26142336-26142463,26141592-26141738	AT5G65420.1  CDS  gene_syn CYCD4;1, CYCLIN D4;1, MNA5.15, MNA5_15  gene CYCD4;1  function Encodes a D-type cyclin CYCD4;1 that physically interacts with CDC2A and is expressed during vascular tissue development, embryogenesis, and formation of lateral root primordia. Its expression is upregulated early during germination.Involved in stomatal cell lineage proliferation in the hypocotyl.  go_component nucleus|GO:0005634||IEA  go_process G1 phase of mitotic cell cycle|GO:0000080|10420643|ISS  go_process response to sucrose stimulus|GO:0009744|10420643|IEP  go_process stomatal lineage progression|GO:0010440|17449809|IMP  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase regulator activity|GO:0016538||ISS  product CYCD4;1 (CYCLIN D4;1); cyclin-dependent protein kinase regulator  note CYCLIN D4;1 (CYCD4;1); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle, G1 phase of mitotic cell cycle, stomatal lineage progression, response to sucrose stimulus; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCD4;2 (cyclin d4;2); cyclin-dependent protein kinase (TAIR:AT5G10440.1); Has 2213 Blast hits to 2211 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 1175; Fungi - 206; Plants - 688; Viruses - 5; Other Eukaryotes - 139 (source: NCBI BLink).  protein_id AT5G65420.1p  transcript_id AT5G65420.1  protein_id AT5G65420.1p  transcript_id AT5G65420.1  
At5g65430	chr5:026149770	0.0	C/26149770-26150255,26149376-26149498,26148687-26148803,26148546-26148560	AT5G65430.2  CDS  gene_syn 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, 14-3-3KAPPA, GENERAL REGULATORY FACTOR 8, GF14 KAPPA, GF14 KAPPA ISOFORM, GRF8, MNA5.16, MNA5_16  gene GRF8  function member of 14-3-3 proteins. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleus|GO:0005634|14617066|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component nucleus|GO:0005634||IDA  go_component cytoplasm|GO:0005737||IDA  go_component plasma membrane|GO:0005886||IDA  go_component plant-type cell wall|GO:0009505||IDA  go_process brassinosteroid mediated signaling|GO:0009742|17681130|IPI  go_function protein binding|GO:0005515||NAS  go_function protein phosphorylated amino acid binding|GO:0045309|10631267|TAS  product GRF8 (GENERAL REGULATORY FACTOR 8); protein binding / protein phosphorylated amino acid binding  note GENERAL REGULATORY FACTOR 8 (GRF8); FUNCTIONS IN: protein phosphorylated amino acid binding, protein binding; INVOLVED IN: brassinosteroid mediated signaling; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: GRF6 (G-box regulating factor 6); protein binding / protein phosphorylated amino acid binding (TAIR:AT5G10450.2); Has 2083 Blast hits to 2075 proteins in 291 species: Archae - 0; Bacteria - 0; Metazoa - 1028; Fungi - 207; Plants - 540; Viruses - 0; Other Eukaryotes - 308 (source: NCBI BLink).  protein_id AT5G65430.2p  transcript_id AT5G65430.2  protein_id AT5G65430.2p  transcript_id AT5G65430.2  
At5g65430	chr5:026149770	0.0	C/26149770-26150255,26149376-26149498,26148687-26148803,26148546-26148566	AT5G65430.1  CDS  gene_syn 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, 14-3-3KAPPA, GENERAL REGULATORY FACTOR 8, GF14 KAPPA, GF14 KAPPA ISOFORM, GRF8, MNA5.16, MNA5_16  gene GRF8  function member of 14-3-3 proteins. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleus|GO:0005634|14617066|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component nucleus|GO:0005634||IDA  go_component cytoplasm|GO:0005737||IDA  go_component plasma membrane|GO:0005886||IDA  go_component plant-type cell wall|GO:0009505||IDA  go_process brassinosteroid mediated signaling|GO:0009742|17681130|IPI  go_function protein binding|GO:0005515||NAS  go_function protein phosphorylated amino acid binding|GO:0045309|10631267|TAS  product GRF8 (GENERAL REGULATORY FACTOR 8); protein binding / protein phosphorylated amino acid binding  note GENERAL REGULATORY FACTOR 8 (GRF8); FUNCTIONS IN: protein phosphorylated amino acid binding, protein binding; INVOLVED IN: brassinosteroid mediated signaling; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: GRF6 (G-box regulating factor 6); protein binding / protein phosphorylated amino acid binding (TAIR:AT5G10450.1); Has 2083 Blast hits to 2075 proteins in 291 species: Archae - 0; Bacteria - 0; Metazoa - 1028; Fungi - 207; Plants - 540; Viruses - 0; Other Eukaryotes - 308 (source: NCBI BLink).  protein_id AT5G65430.1p  transcript_id AT5G65430.1  protein_id AT5G65430.1p  transcript_id AT5G65430.1  
At5g65440	chr5:026152015	0.0	W/26152015-26152050,26152122-26152251,26152375-26152463,26152544-26152692,26152788-26153044,26153135-26153440,26153514-26153601,26153690-26153795,26153898-26154169,26154253-26154373,26154452-26154676,26154760-26154950,26155057-26155224,26155317-26155422,26155538-26155672,26155764-26155916,26156000-26156200,26156306-26156500,26156584-26156655,26156744-26156896	AT5G65440.1  CDS  gene_syn MNA5.17, MNA5_17  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24610.1); Has 48 Blast hits to 46 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G65440.1p  transcript_id AT5G65440.1  protein_id AT5G65440.1p  transcript_id AT5G65440.1  
At5g65440	chr5:026152015	0.0	W/26152015-26152050,26152122-26152251,26152375-26152463,26152544-26152692,26152788-26153044,26153135-26153440,26153514-26153601,26153690-26153795,26153898-26154169,26154253-26154373,26154452-26154676,26154760-26154950,26155057-26155224,26155317-26155422,26155538-26155672,26155764-26155916,26156000-26156200,26156306-26156623	AT5G65440.2  CDS  gene_syn MNA5.17, MNA5_17  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24610.1); Has 46 Blast hits to 46 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 41; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G65440.2p  transcript_id AT5G65440.2  protein_id AT5G65440.2p  transcript_id AT5G65440.2  
At5g65445	chr5:026157189	0.0	C/26157189-26157270	AT5G65445.1  tRNA  gene_syn 67924.TRNA-SER-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: GCT)  transcript_id AT5G65445.1  
At5g65450	chr5:026157863	0.0	W/26157863-26158092,26158222-26158325,26158410-26158999,26159084-26159169,26159270-26159355,26159442-26159604,26159705-26159819,26159921-26160078,26160172-26160256,26160339-26160554,26160644-26160705,26160796-26161096	AT5G65450.1  CDS  gene_syn MNA5.19, MNA5_19, UBIQUITIN-SPECIFIC PROTEASE 17, UBP17  gene UBP17  function Encodes a ubiquitin-specific protease.  go_component mitochondrion|GO:0005739||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_function cysteine-type endopeptidase activity|GO:0004197||ISS  go_function ubiquitin thiolesterase activity|GO:0004221||ISS  product UBP17 (UBIQUITIN-SPECIFIC PROTEASE 17); cysteine-type endopeptidase/ ubiquitin thiolesterase/ zinc ion binding  note UBIQUITIN-SPECIFIC PROTEASE 17 (UBP17); FUNCTIONS IN: cysteine-type endopeptidase activity, ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: UBP16 (UBIQUITIN-SPECIFIC PROTEASE 16); ubiquitin thiolesterase/ ubiquitin-specific protease/ zinc ion binding (TAIR:AT4G24560.1); Has 7058 Blast hits to 5643 proteins in 192 species: Archae - 0; Bacteria - 14; Metazoa - 3812; Fungi - 786; Plants - 613; Viruses - 5; Other Eukaryotes - 1828 (source: NCBI BLink).  protein_id AT5G65450.1p  transcript_id AT5G65450.1  protein_id AT5G65450.1p  transcript_id AT5G65450.1  
At5g65460	chr5:026168804	0.0	C/26168804-26169001,26168460-26168583,26168206-26168292,26167917-26168087,26167676-26167833,26167164-26167295,26166890-26167068,26166628-26166789,26166373-26166464,26166084-26166235,26165622-26165795,26165383-26165529,26165042-26165212,26164858-26164926,26164591-26164646,26164302-26164488,26163933-26164124,26163629-26163820,26163177-26163527,26162882-26162980,26162638-26162778,26162381-26162539,26161831-26162283	AT5G65460.1  CDS  gene_syn MNA5.20, MNA5_20  go_component plasma membrane|GO:0005886|17317660|IDA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product kinesin motor protein-related  note kinesin motor protein-related; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin motor protein-related (TAIR:AT5G10470.2); Has 15642 Blast hits to 13318 proteins in 605 species: Archae - 48; Bacteria - 746; Metazoa - 7514; Fungi - 1425; Plants - 1041; Viruses - 41; Other Eukaryotes - 4827 (source: NCBI BLink).  protein_id AT5G65460.1p  transcript_id AT5G65460.1  protein_id AT5G65460.1p  transcript_id AT5G65460.1  
At5g65470	chr5:026172432	0.0	W/26172432-26172530,26172948-26173004,26173103-26173184,26173269-26173428,26173518-26173721,26173812-26174088,26174182-26174409,26174497-26174904	AT5G65470.1  CDS  gene_syn MNA5.21, MNA5_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24530.1); Has 433 Blast hits to 425 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 433; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G65470.1p  transcript_id AT5G65470.1  protein_id AT5G65470.1p  transcript_id AT5G65470.1  
At5g65480	chr5:026176827	0.0	W/26176827-26177241,26177388-26177434	AT5G65480.1  CDS  gene_syn MNA5.18  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38060.2); Has 29 Blast hits to 29 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G65480.1p  transcript_id AT5G65480.1  protein_id AT5G65480.1p  transcript_id AT5G65480.1  
At5g65490	chr5:026179195	0.0	C/26179195-26180309,26178763-26179101,26178530-26178666,26178270-26178430,26178003-26178182	AT5G65490.1  CDS  gene_syn K19O4.5, K19O4_5  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SGT1 (InterPro:IPR010770); Has 4480 Blast hits to 3390 proteins in 346 species: Archae - 8; Bacteria - 210; Metazoa - 1070; Fungi - 582; Plants - 124; Viruses - 61; Other Eukaryotes - 2425 (source: NCBI BLink).  protein_id AT5G65490.1p  transcript_id AT5G65490.1  protein_id AT5G65490.1p  transcript_id AT5G65490.1  
At5g65495	chr5:026180507	0.0	W/26180507-26180791	AT5G65495.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 4 Blast hits to 4 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G65495.1p  transcript_id AT5G65495.1  protein_id AT5G65495.1p  transcript_id AT5G65495.1  
At5g65500	chr5:026183796	0.0	C/26183796-26183997,26183596-26183708,26183358-26183488,26182904-26183281,26182693-26182804,26181367-26182605,26181093-26181293	AT5G65500.1  CDS  gene_syn K19O4.3, K19O4_3  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ ubiquitin-protein ligase  note ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ ubiquitin-protein ligase; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein / U-box domain-containing protein (TAIR:AT3G49060.1); Has 28327 Blast hits to 27645 proteins in 1051 species: Archae - 64; Bacteria - 896; Metazoa - 10190; Fungi - 573; Plants - 13417; Viruses - 133; Other Eukaryotes - 3054 (source: NCBI BLink).  protein_id AT5G65500.1p  transcript_id AT5G65500.1  protein_id AT5G65500.1p  transcript_id AT5G65500.1  
At5g65510	chr5:026185829	0.0	W/26185829-26185961,26186275-26186851,26187147-26187229,26188371-26188379,26188460-26188548,26188643-26188716,26188802-26188929,26189010-26189413	AT5G65510.1  CDS  gene_syn AIL7, AINTEGUMENTA-like 7, K21L13.1, K21L13_1  gene AIL7  go_component nucleus|GO:0005634|10948255|IC  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process organ morphogenesis|GO:0009887|8742707|ISS  go_function DNA binding|GO:0003677|9192694|TAS  go_function transcription factor activity|GO:0003700|10948255|ISS  go_function transcription factor activity|GO:0003700|10948255|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product AIL7 (AINTEGUMENTA-like 7); DNA binding / transcription factor  note AINTEGUMENTA-like 7 (AIL7); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: organ morphogenesis, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AIL6 (AINTEGUMENTA-LIKE 6); DNA binding / transcription factor (TAIR:AT5G10510.2); Has 4631 Blast hits to 3220 proteins in 199 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 4566; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT5G65510.1p  transcript_id AT5G65510.1  protein_id AT5G65510.1p  transcript_id AT5G65510.1  
At5g65520	chr5:026189876	0.0	C/26189876-26190496	AT5G65520.1  CDS  gene_syn K21L13.2, K21L13_2  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); Has 50 Blast hits to 46 proteins in 18 species: Archae - 0; Bacteria - 28; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G65520.1p  transcript_id AT5G65520.1  protein_id AT5G65520.1p  transcript_id AT5G65520.1  
At5g65530	chr5:026192814	0.0	C/26192814-26192826,26192300-26192725,26191953-26192210,26191721-26191875,26191559-26191638,26191320-26191458,26191084-26191233,26190844-26190993	AT5G65530.1  CDS  gene_syn K21L13.3, K21L13_3  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: RBK1 (Rop Binding protein Kinases 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G10520.1); Has 81717 Blast hits to 80923 proteins in 3104 species: Archae - 39; Bacteria - 7221; Metazoa - 36006; Fungi - 6267; Plants - 18280; Viruses - 406; Other Eukaryotes - 13498 (source: NCBI BLink).  protein_id AT5G65530.1p  transcript_id AT5G65530.1  protein_id AT5G65530.1p  transcript_id AT5G65530.1  
At5g65533	chr5:026194668	0.0	C/26194668-26194874	AT5G65533.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G65533.1p  transcript_id AT5G65533.1  protein_id AT5G65533.1p  transcript_id AT5G65533.1  
At5g65535	chr5:026195459	0.0	W/26195459-26195531	AT5G65535.1  tRNA  gene_syn 67926.TRNA-ARG-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: CCT)  transcript_id AT5G65535.1  
At5g65540	chr5:026195710	0.0	W/26195710-26196037,26196126-26196232,26196400-26197184,26197316-26197448,26197565-26197908,26197992-26198112	AT5G65540.1  CDS  gene_syn K21L13.5, K21L13_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 7021 Blast hits to 3682 proteins in 251 species: Archae - 0; Bacteria - 162; Metazoa - 2380; Fungi - 717; Plants - 744; Viruses - 57; Other Eukaryotes - 2961 (source: NCBI BLink).  protein_id AT5G65540.1p  transcript_id AT5G65540.1  protein_id AT5G65540.1p  transcript_id AT5G65540.1  
At5g65550	chr5:026198410	0.0	C/26198410-26199810	AT5G65550.1  CDS  gene_syn K21L13.6, K21L13_6  go_process metabolic process|GO:0008152||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT5G49690.1); Has 4410 Blast hits to 4378 proteins in 327 species: Archae - 0; Bacteria - 311; Metazoa - 1406; Fungi - 17; Plants - 2607; Viruses - 47; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT5G65550.1p  transcript_id AT5G65550.1  protein_id AT5G65550.1p  transcript_id AT5G65550.1  
At5g65560	chr5:026201012	0.0	C/26201012-26203759	AT5G65560.1  CDS  gene_syn K21L13.7, K21L13_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G07290.1); Has 30109 Blast hits to 6273 proteins in 194 species: Archae - 5; Bacteria - 18; Metazoa - 1022; Fungi - 921; Plants - 26555; Viruses - 0; Other Eukaryotes - 1588 (source: NCBI BLink).  protein_id AT5G65560.1p  transcript_id AT5G65560.1  protein_id AT5G65560.1p  transcript_id AT5G65560.1  
At5g65570	chr5:026203968	0.0	W/26203968-26206184	AT5G65570.1  CDS  gene_syn K21L13.8, K21L13_8  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: CRR22 (CHLORORESPIRATORY REDUCTION22); endonuclease (TAIR:AT1G11290.1); Has 13631 Blast hits to 4761 proteins in 141 species: Archae - 0; Bacteria - 3; Metazoa - 67; Fungi - 22; Plants - 13291; Viruses - 0; Other Eukaryotes - 248 (source: NCBI BLink).  protein_id AT5G65570.1p  transcript_id AT5G65570.1  protein_id AT5G65570.1p  transcript_id AT5G65570.1  
At5g65575	chr5:026206845	0.0	C/26206845-26207913	AT5G65575.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT5G65580  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G65575.1  
At5g65580	chr5:026207654	0.0	W/26207654-26207962	AT5G65580.1  CDS  gene_syn K21L13.9, K21L13_9  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G65580.1p  transcript_id AT5G65580.1  protein_id AT5G65580.1p  transcript_id AT5G65580.1  
At5g65590	chr5:026212084	0.0	C/26212084-26213034	AT5G65590.1  CDS  gene_syn K21L13.10, K21L13_10  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product Dof-type zinc finger domain-containing protein  note Dof-type zinc finger domain-containing protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT4G38000.1); Has 626 Blast hits to 622 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 1; Plants - 613; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT5G65590.1p  transcript_id AT5G65590.1  protein_id AT5G65590.1p  transcript_id AT5G65590.1  
At5g65600	chr5:026216126	0.0	C/26216126-26218153	AT5G65600.1  CDS  gene_syn K21L13.11, K21L13_11  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product legume lectin family protein / protein kinase family protein  note legume lectin family protein / protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin protein kinase, putative (TAIR:AT5G10530.1); Has 91279 Blast hits to 89744 proteins in 3241 species: Archae - 48; Bacteria - 7863; Metazoa - 39740; Fungi - 7100; Plants - 20398; Viruses - 415; Other Eukaryotes - 15715 (source: NCBI BLink).  protein_id AT5G65600.1p  transcript_id AT5G65600.1  protein_id AT5G65600.1p  transcript_id AT5G65600.1  
At5g65609	chr5:026219163	0.0	C/26219163-26219345	AT5G65609.1  CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G67245.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G65609.1p  transcript_id AT5G65609.1  protein_id AT5G65609.1p  transcript_id AT5G65609.1  
At5g65610	chr5:026219258	0.0	W/26219258-26219474,26219801-26219935,26220296-26220352,26220597-26220761,26220850-26221028	AT5G65610.1  CDS  gene_syn K21L13.12, K21L13_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.10 ten leaves visible; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G65610.1p  transcript_id AT5G65610.1  protein_id AT5G65610.1p  transcript_id AT5G65610.1  
At5g65615	chr5:026221634	0.0	C/26221634-26221707	AT5G65615.1  tRNA  gene_syn 67926.TRNA-ASN-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asn (anticodon: GTT)  transcript_id AT5G65615.1  
At5g65620	chr5:026221951	0.0	W/26221951-26222334,26222421-26222588,26222683-26222806,26222882-26222958,26223049-26223192,26223287-26223517,26223592-26223682,26223837-26223958,26224043-26224150,26224242-26224487,26224587-26224732,26224826-26224943,26225023-26225182,26225272-26225303,26225391-26225456,26225536-26225607,26225698-26225784	AT5G65620.1  CDS  gene_syn K21L13.14, K21L13_14  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process proteolysis|GO:0006508||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_process proteolysis|GO:0006508||ISS  go_function metalloendopeptidase activity|GO:0004222||ISS  product peptidase M3 family protein / thimet oligopeptidase family protein  note peptidase M3 family protein / thimet oligopeptidase family protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cytosol, chloroplast, chloroplast stroma; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M3A and M3B, thimet/oligopeptidase F (InterPro:IPR001567); BEST Arabidopsis thaliana protein match is: peptidase M3 family protein / thimet oligopeptidase family protein (TAIR:AT5G10540.1); Has 3933 Blast hits to 3929 proteins in 867 species: Archae - 2; Bacteria - 1850; Metazoa - 294; Fungi - 301; Plants - 51; Viruses - 0; Other Eukaryotes - 1435 (source: NCBI BLink).  protein_id AT5G65620.1p  transcript_id AT5G65620.1  protein_id AT5G65620.1p  transcript_id AT5G65620.1  
At5g65630	chr5:026226788	0.0	C/26226788-26228257,26226484-26226694,26226311-26226402	AT5G65630.1  CDS  gene_syn GTE7, Global transcription factor group E 7, K21L13.15, K21L13_15  gene GTE7  function This gene is predicted to encode a bromodomain-containing protein. Plant lines expressing RNAi constructs targeted against GTE7 show some resistance to agrobacterium-mediated root transformation.  go_component cellular_component|GO:0005575||ND  go_process DNA mediated transformation|GO:0009294|17827277|IMP  go_function DNA binding|GO:0003677||ISS  product GTE7 (Global transcription factor group E 7); DNA binding  note Global transcription factor group E 7 (GTE7); FUNCTIONS IN: DNA binding; INVOLVED IN: DNA mediated transformation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: GTE2 (Global transcription factor group E 2); DNA binding (TAIR:AT5G10550.1); Has 15960 Blast hits to 8840 proteins in 569 species: Archae - 25; Bacteria - 1512; Metazoa - 6156; Fungi - 1597; Plants - 2057; Viruses - 506; Other Eukaryotes - 4107 (source: NCBI BLink).  protein_id AT5G65630.1p  transcript_id AT5G65630.1  protein_id AT5G65630.1p  transcript_id AT5G65630.1  
At5g65640	chr5:026237137	0.0	W/26237137-26237754,26238240-26238422,26238554-26238721,26238818-26238904	AT5G65640.1  CDS  gene_syn K21L13.16, K21L13_16, bHLH093, beta HLH protein 93  gene bHLH093  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product bHLH093 (beta HLH protein 93); DNA binding / transcription factor  note beta HLH protein 93 (bHLH093); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT5G10570.1); Has 1575 Blast hits to 1575 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 74; Fungi - 13; Plants - 1485; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G65640.1p  transcript_id AT5G65640.1  protein_id AT5G65640.1p  transcript_id AT5G65640.1  
At5g65640	chr5:026237137	0.0	W/26237137-26237754,26238240-26238422,26238564-26238635	AT5G65640.2  CDS  gene_syn K21L13.16, K21L13_16, bHLH093, beta HLH protein 93  gene bHLH093  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product bHLH093 (beta HLH protein 93); DNA binding / transcription factor  note beta HLH protein 93 (bHLH093); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT5G10570.1); Has 1520 Blast hits to 1520 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 75; Fungi - 13; Plants - 1427; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G65640.2p  transcript_id AT5G65640.2  protein_id AT5G65640.2p  transcript_id AT5G65640.2  
At5g65650	chr5:026239588	0.0	W/26239588-26239839,26239925-26240140,26241106-26241195	AT5G65650.1  CDS  gene_syn K21L13.17, K21L13_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1195 (InterPro:IPR010608); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G36660.1); Has 43 Blast hits to 43 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G65650.1p  transcript_id AT5G65650.1  protein_id AT5G65650.1p  transcript_id AT5G65650.1  
At5g65660	chr5:026246018	0.0	C/26246018-26246245,26245444-26245626	AT5G65660.1  CDS  gene_syn K21L13.18, K21L13_18  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 31 Blast hits to 31 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 21; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G65660.1p  transcript_id AT5G65660.1  protein_id AT5G65660.1p  transcript_id AT5G65660.1  
At5g65670	chr5:026254463	0.0	W/26254463-26255004,26255100-26255326,26255439-26255580,26255734-26255795,26256091-26256134	AT5G65670.1  CDS  gene_syn IAA9, INDOLE-3-ACETIC ACID 9, INDOLE-3-ACETIC ACID INDUCIBLE 9, MPA24.1, MPA24_1  gene IAA9  function auxin (indole-3-acetic acid) induced gene  go_component nucleus|GO:0005634|7658471|ISS  go_process response to auxin stimulus|GO:0009733|12036262|TAS  go_process auxin mediated signaling pathway|GO:0009734|11115889|TAS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9342315|ISS  product IAA9 (INDOLE-3-ACETIC ACID INDUCIBLE 9); transcription factor  note INDOLE-3-ACETIC ACID INDUCIBLE 9 (IAA9); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to cyclopentenone, auxin mediated signaling pathway, response to auxin stimulus; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA8; transcription factor (TAIR:AT2G22670.3); Has 1065 Blast hits to 1064 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 1061; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G65670.1p  transcript_id AT5G65670.1  protein_id AT5G65670.1p  transcript_id AT5G65670.1  
At5g65670	chr5:026254463	0.0	W/26254463-26255004,26255100-26255326,26255439-26255580,26255734-26255795,26256097-26256134	AT5G65670.2  CDS  gene_syn IAA9, INDOLE-3-ACETIC ACID 9, INDOLE-3-ACETIC ACID INDUCIBLE 9, MPA24.1, MPA24_1  gene IAA9  function auxin (indole-3-acetic acid) induced gene  go_component nucleus|GO:0005634|7658471|ISS  go_process response to auxin stimulus|GO:0009733|12036262|TAS  go_process auxin mediated signaling pathway|GO:0009734|11115889|TAS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9342315|ISS  product IAA9 (INDOLE-3-ACETIC ACID INDUCIBLE 9); transcription factor  note INDOLE-3-ACETIC ACID INDUCIBLE 9 (IAA9); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to cyclopentenone, auxin mediated signaling pathway, response to auxin stimulus; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA8; transcription factor (TAIR:AT2G22670.3); Has 1069 Blast hits to 1068 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 1065; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G65670.2p  transcript_id AT5G65670.2  protein_id AT5G65670.2p  transcript_id AT5G65670.2  
At5g65676	chr5:026258459	0.0	W/26258459-26259916	AT5G65676.1  mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 3.5e-191 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element)  
At5g65683	chr5:026261472	0.0	W/26261472-26261873,26261953-26263704	AT5G65683.1  CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: EDA40 (embryo sac development arrest 40); protein binding / ubiquitin-protein ligase/ zinc ion binding (TAIR:AT4G37890.2); Has 1992 Blast hits to 716 proteins in 135 species: Archae - 2; Bacteria - 117; Metazoa - 478; Fungi - 142; Plants - 200; Viruses - 0; Other Eukaryotes - 1053 (source: NCBI BLink).  protein_id AT5G65683.1p  transcript_id AT5G65683.1  protein_id AT5G65683.1p  transcript_id AT5G65683.1  
At5g65690	chr5:026266477	0.0	W/26266477-26266775,26267102-26267274,26267371-26267524,26267669-26267753,26267845-26268418,26268506-26268750,26268828-26268997,26269081-26269249,26269343-26269486	AT5G65690.1  CDS  gene_syn PCK2, PEPCK, PHOSPHOENOLPYRUVATE CARBOXYKINASE, PHOSPHOENOLPYRUVATE CARBOXYKINASE 2  gene PCK2  function Encodes a putative phosphoenolpyruvate carboxykinase (ATP-dependent).  go_process gluconeogenesis|GO:0006094||IEA  go_function phosphoenolpyruvate carboxykinase activity|GO:0004611||IEA  go_function phosphoenolpyruvate carboxykinase (ATP) activity|GO:0004612||IEA  go_function ATP binding|GO:0005524||IEA  go_function purine nucleotide binding|GO:0017076||IEA  go_component cellular_component|GO:0005575||ND  go_process gluconeogenesis|GO:0006094||ISS  go_function phosphoenolpyruvate carboxykinase (ATP) activity|GO:0004612||ISS  go_function ATP binding|GO:0005524||ISS  product PCK2 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 2); ATP binding / phosphoenolpyruvate carboxykinase (ATP)/ phosphoenolpyruvate carboxykinase/ purine nucleotide binding  note PHOSPHOENOLPYRUVATE CARBOXYKINASE 2 (PCK2); FUNCTIONS IN: phosphoenolpyruvate carboxykinase activity, purine nucleotide binding, phosphoenolpyruvate carboxykinase (ATP) activity, ATP binding; INVOLVED IN: gluconeogenesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, male gametophyte, flower, root, trichome; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Phosphoenolpyruvate carboxykinase, N-terminal (InterPro:IPR008210), Phosphoenolpyruvate carboxykinase (ATP), conserved site (InterPro:IPR015994), Phosphoenolpyruvate carboxykinase, ATP-utilising (InterPro:IPR001272), Phosphoenolpyruvate carboxykinase, C-terminal (InterPro:IPR013035); BEST Arabidopsis thaliana protein match is: PCK1 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 1); ATP binding / phosphoenolpyruvate carboxykinase (ATP)/ phosphoenolpyruvate carboxykinase/ purine nucleotide binding (TAIR:AT4G37870.1); Has 3173 Blast hits to 3170 proteins in 773 species: Archae - 13; Bacteria - 1425; Metazoa - 2; Fungi - 93; Plants - 80; Viruses - 0; Other Eukaryotes - 1560 (source: NCBI BLink).  protein_id AT5G65690.1p  transcript_id AT5G65690.1  protein_id AT5G65690.1p  transcript_id AT5G65690.1  
At5g65687	chr5:026272705	0.0	C/26272705-26272787,26272297-26272428,26272101-26272202,26271892-26271996,26271721-26271796,26271562-26271636,26271370-26271475,26271181-26271277,26270828-26271098,26270626-26270745,26270398-26270526,26270235-26270313,26270038-26270141	AT5G65687.1  CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product transporter-related  note transporter-related; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: transporter-related (TAIR:AT2G22730.1); Has 21389 Blast hits to 21338 proteins in 1470 species: Archae - 350; Bacteria - 14827; Metazoa - 759; Fungi - 3444; Plants - 260; Viruses - 0; Other Eukaryotes - 1749 (source: NCBI BLink).  protein_id AT5G65687.1p  transcript_id AT5G65687.1  protein_id AT5G65687.1p  transcript_id AT5G65687.1  
At5g65685	chr5:026275749	0.0	C/26275749-26275864,26275481-26275514,26275329-26275407,26275108-26275236,26274792-26274996,26274571-26274705,26274385-26274489,26274150-26274248,26273929-26274058,26273804-26273851,26273596-26273706,26273434-26273522,26273252-26273354	AT5G65685.1  CDS  go_component chloroplast|GO:0009507||IEA  go_function starch synthase activity|GO:0009011|16098110|TAS  product soluble glycogen synthase-related  note soluble glycogen synthase-related; FUNCTIONS IN: starch synthase activity; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Starch synthase catalytic region (InterPro:IPR013534); BEST Arabidopsis thaliana protein match is: ATSS4; transferase, transferring glycosyl groups (TAIR:AT4G18240.1); Has 1832 Blast hits to 1821 proteins in 674 species: Archae - 21; Bacteria - 1377; Metazoa - 3; Fungi - 0; Plants - 233; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink).  protein_id AT5G65685.1p  transcript_id AT5G65685.1  protein_id AT5G65685.1p  transcript_id AT5G65685.1  
At5g65700	chr5:026281826	0.0	W/26281826-26284424,26284533-26284945	AT5G65700.1  CDS  gene_syn BAM1, BARELY ANY MERISTEM 1, MPA24.5, MPA24_5  gene BAM1  function Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM2,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM1 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_process regulation of meristem organization|GO:0009934|18780746|IGI  go_process regulation of meristem growth|GO:0010075|16367950|IGI  go_process microsporocyte differentiation|GO:0010480|16751349|IGI  go_process gametophyte development|GO:0048229|16367950|IGI  go_process leaf development|GO:0048366|16367950|IGI  go_process floral organ development|GO:0048437|16367950|IGI  go_process anther development|GO:0048653|16751349|IGI  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product BAM1 (BARELY ANY MERISTEM 1); ATP binding / kinase/ protein serine/threonine kinase  note BARELY ANY MERISTEM 1 (BAM1); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: in 9 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: BAM2 (BARELY ANY MERISTEM 2); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase (TAIR:AT3G49670.1); Has 142619 Blast hits to 97871 proteins in 3489 species: Archae - 92; Bacteria - 11317; Metazoa - 54933; Fungi - 7208; Plants - 48864; Viruses - 405; Other Eukaryotes - 19800 (source: NCBI BLink).  protein_id AT5G65700.1p  transcript_id AT5G65700.1  protein_id AT5G65700.1p  transcript_id AT5G65700.1  
At5g65710	chr5:026292372	0.0	W/26292372-26294973,26295061-26295440	AT5G65710.1  CDS  gene_syn HAESA-Like 2, HSL2, MPA24.6, MPA24_6  gene HSL2  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product HSL2 (HAESA-Like 2); ATP binding / kinase/ protein serine/threonine kinase  note HAESA-Like 2 (HSL2); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591); BEST Arabidopsis thaliana protein match is: HSL1 (HAESA-Like 1); ATP binding / kinase/ protein serine/threonine kinase (TAIR:AT1G28440.1); Has 144304 Blast hits to 97876 proteins in 3284 species: Archae - 93; Bacteria - 12099; Metazoa - 54934; Fungi - 7198; Plants - 50247; Viruses - 350; Other Eukaryotes - 19383 (source: NCBI BLink).  protein_id AT5G65710.1p  transcript_id AT5G65710.1  protein_id AT5G65710.1p  transcript_id AT5G65710.1  
At5g65720	chr5:026296349	0.0	W/26296349-26297710	AT5G65720.1  CDS  gene_syn ATNFS1, ATNIFS1, CYSTEINE DESULFURASE, GEN FIXATION S HOMOLOG 1, MPA24.7, MPA24_7, NFS1, NIFS1  gene NFS1  function cysteine desulfurase whose activity is dependent on AtSufE activation.  go_component mitochondrion|GO:0005739|17137349|IDA  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process iron-sulfur cluster assembly|GO:0016226|17417719|IDA  go_function transaminase activity|GO:0008483||ISS  go_function cysteine desulfurase activity|GO:0031071|16437155|IDA  product NFS1; ATP binding / cysteine desulfurase/ transaminase  note NFS1; FUNCTIONS IN: transaminase activity, cysteine desulfurase activity, ATP binding; INVOLVED IN: iron-sulfur cluster assembly; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Cysteine desulfurase (InterPro:IPR010240), Aminotransferase, class V/Cysteine desulfurase (InterPro:IPR000192), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Cysteine desulfurase, NifS (InterPro:IPR016454); BEST Arabidopsis thaliana protein match is: CPNIFS (CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE); cysteine desulfurase/ selenocysteine lyase/ transaminase (TAIR:AT1G08490.1); Has 13557 Blast hits to 13553 proteins in 1597 species: Archae - 278; Bacteria - 7545; Metazoa - 317; Fungi - 208; Plants - 82; Viruses - 7; Other Eukaryotes - 5120 (source: NCBI BLink).  protein_id AT5G65720.1p  transcript_id AT5G65720.1  protein_id AT5G65720.1p  transcript_id AT5G65720.1  
At5g65720	chr5:026296733	0.0	W/26296733-26297710	AT5G65720.2  CDS  gene_syn ATNFS1, ATNIFS1, CYSTEINE DESULFURASE, GEN FIXATION S HOMOLOG 1, MPA24.7, MPA24_7, NFS1, NIFS1  gene NFS1  function cysteine desulfurase whose activity is dependent on AtSufE activation.  go_component mitochondrion|GO:0005739|17137349|IDA  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process iron-sulfur cluster assembly|GO:0016226|17417719|IDA  go_function transaminase activity|GO:0008483||ISS  go_function cysteine desulfurase activity|GO:0031071|16437155|IDA  product NFS1; ATP binding / cysteine desulfurase/ transaminase  note NFS1; FUNCTIONS IN: transaminase activity, cysteine desulfurase activity, ATP binding; INVOLVED IN: iron-sulfur cluster assembly; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase, class V/Cysteine desulfurase (InterPro:IPR000192), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Cysteine desulfurase, NifS (InterPro:IPR016454); BEST Arabidopsis thaliana protein match is: CPNIFS (CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE); cysteine desulfurase/ selenocysteine lyase/ transaminase (TAIR:AT1G08490.1); Has 12138 Blast hits to 12135 proteins in 1588 species: Archae - 247; Bacteria - 7211; Metazoa - 258; Fungi - 146; Plants - 63; Viruses - 6; Other Eukaryotes - 4207 (source: NCBI BLink).  protein_id AT5G65720.2p  transcript_id AT5G65720.2  protein_id AT5G65720.2p  transcript_id AT5G65720.2  
At5g65730	chr5:026299080	0.0	W/26299080-26299275,26299381-26299481,26299589-26299785,26299906-26300290	AT5G65730.1  CDS  gene_syn MPA24.8, MPA24_8  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762||IEA  go_process response to water deprivation|GO:0009414|18552355|IEP  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative  note xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: response to water deprivation; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative (TAIR:AT4G37800.1); Has 1348 Blast hits to 1342 proteins in 196 species: Archae - 0; Bacteria - 152; Metazoa - 0; Fungi - 301; Plants - 805; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT5G65730.1p  transcript_id AT5G65730.1  protein_id AT5G65730.1p  transcript_id AT5G65730.1  
At5g65740	chr5:026302830	0.0	C/26302830-26302892,26302648-26302762,26302487-26302544,26302330-26302410,26302075-26302211,26301866-26301989,26301702-26301774	AT5G65740.1  CDS  gene_syn MPA24.9, MPA24_9  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); Has 128 Blast hits to 128 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 99; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G65740.1p  transcript_id AT5G65740.1  protein_id AT5G65740.1p  transcript_id AT5G65740.1  
At5g65740	chr5:026302830	0.0	C/26302830-26302892,26302648-26302762,26302487-26302544,26302330-26302410,26302075-26302211,26301866-26301989,26301702-26301774	AT5G65740.3  CDS  gene_syn MPA24.9, MPA24_9  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); Has 128 Blast hits to 128 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 99; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G65740.3p  transcript_id AT5G65740.3  protein_id AT5G65740.3p  transcript_id AT5G65740.3  
At5g65740	chr5:026303333	0.0	C/26303333-26303422,26303176-26303246,26302973-26303051,26302830-26302904,26302648-26302762,26302487-26302544,26302330-26302410,26302075-26302211,26301866-26301989,26301702-26301774	AT5G65740.2  CDS  gene_syn MPA24.9, MPA24_9  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); Has 130 Blast hits to 129 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 99; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT5G65740.2p  transcript_id AT5G65740.2  protein_id AT5G65740.2p  transcript_id AT5G65740.2  
At5g65750	chr5:026304212	0.0	W/26304212-26305771,26305891-26306117,26306226-26306558,26306642-26306888,26306974-26307102,26307194-26307409,26307498-26307621,26307706-26307947	AT5G65750.1  CDS  gene_syn MPA24.10, MPA24_10  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function oxoglutarate dehydrogenase (succinyl-transferring) activity|GO:0004591||IEA  go_function oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor|GO:0016624||IEA  go_function thiamin pyrophosphate binding|GO:0030976||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function oxoglutarate dehydrogenase (succinyl-transferring) activity|GO:0004591||ISS  product 2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative  note 2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, oxoglutarate dehydrogenase (succinyl-transferring) activity, thiamin pyrophosphate binding; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxoglutarate dehydrogenase, E1 component (InterPro:IPR011603), Dehydrogenase, E1 component (InterPro:IPR001017), Transketolase, central region (InterPro:IPR005475); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative (TAIR:AT3G55410.1); Has 8716 Blast hits to 8694 proteins in 1114 species: Archae - 2; Bacteria - 2389; Metazoa - 550; Fungi - 187; Plants - 68; Viruses - 0; Other Eukaryotes - 5520 (source: NCBI BLink).  protein_id AT5G65750.1p  transcript_id AT5G65750.1  protein_id AT5G65750.1p  transcript_id AT5G65750.1  
At5g65760	chr5:026308289	0.0	W/26308289-26308687,26308772-26308958,26309050-26309183,26309268-26309380,26309464-26309587,26309790-26309939,26310032-26310187,26310266-26310345,26310444-26310493,26310737-26310891	AT5G65760.1  CDS  gene_syn MPA24.11, MPA24_11  go_component vacuole|GO:0005773|15539469|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process proteolysis|GO:0006508||IEA  go_function serine-type peptidase activity|GO:0008236||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type peptidase activity|GO:0008236||ISS  product serine carboxypeptidase S28 family protein  note serine carboxypeptidase S28 family protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S28 (InterPro:IPR008758); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase S28 family protein (TAIR:AT2G24280.1); Has 916 Blast hits to 880 proteins in 115 species: Archae - 0; Bacteria - 6; Metazoa - 522; Fungi - 131; Plants - 109; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink).  protein_id AT5G65760.1p  transcript_id AT5G65760.1  protein_id AT5G65760.1p  transcript_id AT5G65760.1  
At5g65770	chr5:026311587	0.0	W/26311587-26311802,26312198-26312407,26312490-26312743,26312839-26313109,26313232-26313315,26313437-26315142,26315238-26315463,26315545-26315610	AT5G65770.1  CDS  gene_syn LINC4, LITTLE NUCLEI4, MPA24.12, MPA24_12  gene LINC4  go_component chloroplast|GO:0009507|15028209|IDA  product LINC4 (LITTLE NUCLEI4)  note LITTLE NUCLEI4 (LINC4); LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: LINC1 (LITTLE NUCLEI1) (TAIR:AT1G67230.1); Has 152828 Blast hits to 74403 proteins in 2289 species: Archae - 1660; Bacteria - 20996; Metazoa - 72814; Fungi - 11323; Plants - 5321; Viruses - 768; Other Eukaryotes - 39946 (source: NCBI BLink).  protein_id AT5G65770.1p  transcript_id AT5G65770.1  protein_id AT5G65770.1p  transcript_id AT5G65770.1  
At5g65770	chr5:026311587	0.0	W/26311587-26311802,26312198-26312407,26312490-26312743,26312839-26313190,26313232-26313315,26313437-26315142,26315238-26315544	AT5G65770.2  CDS  gene_syn LINC4, LITTLE NUCLEI4, MPA24.12, MPA24_12  gene LINC4  product LINC4 (LITTLE NUCLEI4)  note LITTLE NUCLEI4 (LINC4); EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: LINC1 (LITTLE NUCLEI1) (TAIR:AT1G67230.1).  protein_id AT5G65770.2p  transcript_id AT5G65770.2  protein_id AT5G65770.2p  transcript_id AT5G65770.2  
At5g65780	chr5:026316418	0.0	W/26316418-26316546,26316627-26316712,26316824-26317004,26317149-26317325,26317412-26317543,26317627-26317725,26317806-26317922,26318017-26318112,26318266-26318378,26318468-26318585	AT5G65780.1  CDS  gene_syn ATBCAT-5, MPA24.13, MPA24_13  gene ATBCAT-5  function encodes a chloroplast branched-chain amino acid aminotransferase, can complement the yeast leu/iso-leu/val auxotrophy mutant  go_component chloroplast|GO:0009507|18431481|IDA  go_process metabolic process|GO:0008152||IEA  go_process branched chain family amino acid metabolic process|GO:0009081||IEA  go_component mitochondrion|GO:0005739|14764908|IDA  go_component chloroplast|GO:0009507|12068099|IDA  go_function catalytic activity|GO:0003824||ISS  go_function branched-chain-amino-acid transaminase activity|GO:0004084|12068099|IGI  product ATBCAT-5; branched-chain-amino-acid transaminase/ catalytic  note ATBCAT-5; FUNCTIONS IN: branched-chain-amino-acid transaminase activity, catalytic activity; INVOLVED IN: branched chain family amino acid metabolic process, metabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Aminotransferase, class IV, conserved site (InterPro:IPR018300), Branched-chain amino acid aminotransferase II (InterPro:IPR005786); BEST Arabidopsis thaliana protein match is: BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3); branched-chain-amino-acid transaminase/ catalytic (TAIR:AT3G49680.2); Has 8524 Blast hits to 8522 proteins in 1375 species: Archae - 99; Bacteria - 4041; Metazoa - 245; Fungi - 260; Plants - 157; Viruses - 0; Other Eukaryotes - 3722 (source: NCBI BLink).  protein_id AT5G65780.1p  transcript_id AT5G65780.1  protein_id AT5G65780.1p  transcript_id AT5G65780.1  
At5g65790	chr5:026323035	0.0	W/26323035-26323170,26323291-26323420,26323527-26324385	AT5G65790.1  CDS  gene_syn ATMYB68, MPA24.14, MPA24_14, MYB DOMAIN PROTEIN 68, MYB68  gene MYB68  function Encodes a putative MYB transcription factor.  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB68 (MYB DOMAIN PROTEIN 68); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 68 (MYB68); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to gibberellin stimulus, regulation of transcription, DNA-dependent, response to salicylic acid stimulus; EXPRESSED IN: hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB84 (MYB DOMAIN PROTEIN 84); DNA binding / transcription factor (TAIR:AT3G49690.1); Has 6151 Blast hits to 5760 proteins in 343 species: Archae - 0; Bacteria - 0; Metazoa - 603; Fungi - 274; Plants - 3788; Viruses - 3; Other Eukaryotes - 1483 (source: NCBI BLink).  protein_id AT5G65790.1p  transcript_id AT5G65790.1  protein_id AT5G65790.1p  transcript_id AT5G65790.1  
At5g65800	chr5:026332420	0.0	C/26332420-26332698,26332155-26332315,26331096-26332068	AT5G65800.1  CDS  gene_syn 1-AMINO-1-CYCLOPROPANECARBOXYLATE SYNTHASE, ACC SYNTHASE 5, ACS5, ATACS5, CIN5, CYTOKININ-INSENSITIVE 5, ETHYLENE OVERPRODUCER 2, ETO2, MPA24.15, MPA24_15  gene ACS5  function 1-aminocyclopropane-1-carboxylate synthase (ACS) is encoded by a multigene family consisting of at least five members whose expression is induced by hormones, developmental signals, and protein synthesis inhibition.  go_process ethylene biosynthetic process|GO:0009693|9539813|IMP  go_process ethylene biosynthetic process|GO:0009693||ISS  go_process response to cytokinin stimulus|GO:0009735|9539813|IMP  go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847|12968022|IDA  go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847|9539813|IMP  go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847||ISS  product ACS5 (ACC SYNTHASE 5); 1-aminocyclopropane-1-carboxylate synthase  note ACC SYNTHASE 5 (ACS5); FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate synthase activity; INVOLVED IN: ethylene biosynthetic process, response to cytokinin stimulus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: ACS9 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 9); 1-aminocyclopropane-1-carboxylate synthase (TAIR:AT3G49700.1); Has 19772 Blast hits to 19768 proteins in 1689 species: Archae - 508; Bacteria - 11355; Metazoa - 590; Fungi - 466; Plants - 927; Viruses - 0; Other Eukaryotes - 5926 (source: NCBI BLink).  protein_id AT5G65800.1p  transcript_id AT5G65800.1  protein_id AT5G65800.1p  transcript_id AT5G65800.1  
At5g65810	chr5:026339031	0.0	C/26339031-26339144,26338908-26338947,26338764-26338802,26338257-26338631,26338112-26338167,26337833-26337985	AT5G65810.1  CDS  gene_syn K22J17.2, K22J17_2  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49720.2); Has 32 Blast hits to 32 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G65810.1p  transcript_id AT5G65810.1  protein_id AT5G65810.1p  transcript_id AT5G65810.1  
At5g65820	chr5:026339876	0.0	C/26339876-26341789	AT5G65820.1  CDS  gene_syn K22J17.3, K22J17_3  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; EXPRESSED IN: sperm cell, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49730.1); Has 17228 Blast hits to 5711 proteins in 178 species: Archae - 3; Bacteria - 11; Metazoa - 445; Fungi - 284; Plants - 15866; Viruses - 0; Other Eukaryotes - 619 (source: NCBI BLink).  protein_id AT5G65820.1p  transcript_id AT5G65820.1  protein_id AT5G65820.1p  transcript_id AT5G65820.1  
At5g65830	chr5:026342396	0.0	C/26342396-26343235	AT5G65830.1  CDS  gene_syn K22J17.4, K22J17_4  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP44 (Receptor Like Protein 44); protein binding (TAIR:AT3G49750.1); Has 35662 Blast hits to 8354 proteins in 444 species: Archae - 26; Bacteria - 823; Metazoa - 1315; Fungi - 106; Plants - 31516; Viruses - 0; Other Eukaryotes - 1876 (source: NCBI BLink).  protein_id AT5G65830.1p  transcript_id AT5G65830.1  protein_id AT5G65830.1p  transcript_id AT5G65830.1  
At5g65840	chr5:026345713	0.0	C/26345713-26346057,26345582-26345628,26345372-26345486,26344633-26344677,26344483-26344542,26344298-26344393,26344097-26344216	AT5G65840.1  CDS  gene_syn K14B20.1, K14B20_1  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37240.1); Has 167 Blast hits to 165 proteins in 51 species: Archae - 0; Bacteria - 28; Metazoa - 51; Fungi - 13; Plants - 59; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT5G65840.1p  transcript_id AT5G65840.1  protein_id AT5G65840.1p  transcript_id AT5G65840.1  
At5g65850	chr5:026346317	0.0	W/26346317-26347495	AT5G65850.1  CDS  gene_syn K14B20.2, K14B20_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G31470.1); Has 935 Blast hits to 905 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 933; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G65850.1p  transcript_id AT5G65850.1  protein_id AT5G65850.1p  transcript_id AT5G65850.1  
At5g65860	chr5:026347706	0.0	C/26347706-26348686	AT5G65860.2  CDS  gene_syn K14B20.3, K14B20_3  go_function methyltransferase activity|GO:0008168||IEA  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding, methyltransferase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arginine N-methyltransferase 2 (InterPro:IPR017408), Ankyrin (InterPro:IPR002110); Has 12368 Blast hits to 6399 proteins in 509 species: Archae - 38; Bacteria - 1122; Metazoa - 6924; Fungi - 782; Plants - 257; Viruses - 38; Other Eukaryotes - 3207 (source: NCBI BLink).  protein_id AT5G65860.2p  transcript_id AT5G65860.2  protein_id AT5G65860.2p  transcript_id AT5G65860.2  
At5g65860	chr5:026347706	0.0	C/26347706-26348746	AT5G65860.1  CDS  gene_syn K14B20.3, K14B20_3  go_component endomembrane system|GO:0012505||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding, methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arginine N-methyltransferase 2 (InterPro:IPR017408), Ankyrin (InterPro:IPR002110); Has 12601 Blast hits to 6502 proteins in 513 species: Archae - 38; Bacteria - 1135; Metazoa - 7080; Fungi - 803; Plants - 263; Viruses - 38; Other Eukaryotes - 3244 (source: NCBI BLink).  protein_id AT5G65860.1p  transcript_id AT5G65860.1  protein_id AT5G65860.1p  transcript_id AT5G65860.1  
At5g65870	chr5:026351593	0.0	W/26351593-26351709,26351939-26352055	AT5G65870.1  CDS  gene_syn ATPSK5, PHYTOSULFOKINE 5 PRECURSOR  gene ATPSK5  function Probable phytosulfokines 5 precursor, coding for a unique plant peptide growth factor.  go_function growth factor activity|GO:0008083||IEA  go_component extracellular matrix|GO:0031012|11706167|ISS  go_process cell proliferation|GO:0008283|11706167|ISS  go_process organ morphogenesis|GO:0009887|11706167|ISS  go_process cell differentiation|GO:0030154|11706167|ISS  product ATPSK5 (PHYTOSULFOKINE 5 PRECURSOR); growth factor  note PHYTOSULFOKINE 5 PRECURSOR (ATPSK5); FUNCTIONS IN: growth factor activity; INVOLVED IN: cell differentiation, cell proliferation, organ morphogenesis; LOCATED IN: extracellular matrix; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Phytosulfokine (InterPro:IPR009438); BEST Arabidopsis thaliana protein match is: ATPSK4 (PHYTOSULFOKINE 4 PRECURSOR); growth factor (TAIR:AT3G49780.1); Has 83 Blast hits to 83 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G65870.1p  transcript_id AT5G65870.1  protein_id AT5G65870.1p  transcript_id AT5G65870.1  
At5g65880	chr5:026353095	0.0	W/26353095-26353147,26353459-26353594	AT5G65880.1  CDS  gene_syn K14B20.5, K14B20_5  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 9 Blast hits to 9 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G65880.1p  transcript_id AT5G65880.1  protein_id AT5G65880.1p  transcript_id AT5G65880.1  
At5g65890	chr5:026355701	0.0	W/26355701-26355774,26355872-26355917,26356011-26356125,26356208-26356275,26356513-26356985,26357064-26357721	AT5G65890.1  CDS  gene_syn ACR1, ACT Domain Repeat 1, K14B20.6, K14B20_6  gene ACR1  function Member of ACT domain containing protein family. ACT domains are amino acid binding domains. Shows strongest expression in flowers and siliques.  go_process metabolic process|GO:0008152||IEA  go_component nucleus|GO:0005634|12481063|ISS  go_function amino acid binding|GO:0016597|12481063|ISS  product ACR1 (ACT Domain Repeat 1); amino acid binding  note ACT Domain Repeat 1 (ACR1); FUNCTIONS IN: amino acid binding; INVOLVED IN: metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: ACR3; amino acid binding (TAIR:AT1G76990.5); Has 1072 Blast hits to 819 proteins in 180 species: Archae - 0; Bacteria - 516; Metazoa - 0; Fungi - 0; Plants - 231; Viruses - 0; Other Eukaryotes - 325 (source: NCBI BLink).  protein_id AT5G65890.1p  transcript_id AT5G65890.1  protein_id AT5G65890.1p  transcript_id AT5G65890.1  
At5g65890	chr5:026356047	0.0	W/26356047-26356125,26356208-26356275,26356513-26356985,26357064-26357721	AT5G65890.2  CDS  gene_syn ACR1, ACT Domain Repeat 1, K14B20.6, K14B20_6  gene ACR1  function Member of ACT domain containing protein family. ACT domains are amino acid binding domains. Shows strongest expression in flowers and siliques.  go_process metabolic process|GO:0008152||IEA  go_component nucleus|GO:0005634|12481063|ISS  go_function amino acid binding|GO:0016597|12481063|ISS  product ACR1 (ACT Domain Repeat 1); amino acid binding  note ACT Domain Repeat 1 (ACR1); FUNCTIONS IN: amino acid binding; INVOLVED IN: metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: ACR3; amino acid binding (TAIR:AT1G76990.5); Has 452 Blast hits to 428 proteins in 98 species: Archae - 0; Bacteria - 186; Metazoa - 0; Fungi - 0; Plants - 178; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT5G65890.2p  transcript_id AT5G65890.2  protein_id AT5G65890.2p  transcript_id AT5G65890.2  
At5g65900	chr5:026358328	0.0	W/26358328-26358864,26358959-26359144,26359226-26359411,26359491-26359574,26359693-26359734,26359821-26359889,26359984-26360286,26360366-26360404,26360499-26360603,26360696-26360764,26360848-26360973,26361089-26361244	AT5G65900.1  CDS  gene_syn K14B20.7, K14B20_7  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_component cellular_component|GO:0005575||ND  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD/DEAH box helicase, putative  note DEAD/DEAH box helicase, putative; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (TAIR:AT3G18600.1); Has 95183 Blast hits to 55786 proteins in 2102 species: Archae - 497; Bacteria - 14644; Metazoa - 33217; Fungi - 9684; Plants - 3919; Viruses - 789; Other Eukaryotes - 32433 (source: NCBI BLink).  protein_id AT5G65900.1p  transcript_id AT5G65900.1  protein_id AT5G65900.1p  transcript_id AT5G65900.1  
At5g65910	chr5:026362813	0.0	C/26362813-26363341,26362468-26362655,26361592-26362173	AT5G65910.1  CDS  gene_syn K14B20.8, K14B20_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product BSD domain-containing protein  note BSD domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT3G49800.1); Has 402 Blast hits to 370 proteins in 82 species: Archae - 0; Bacteria - 12; Metazoa - 122; Fungi - 40; Plants - 133; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT5G65910.1p  transcript_id AT5G65910.1  protein_id AT5G65910.1p  transcript_id AT5G65910.1  
At5g65920	chr5:026364323	0.0	C/26364323-26365657	AT5G65920.1  CDS  gene_syn K14B20.9, K14B20_9  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  product U-box domain-containing protein  note U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein (TAIR:AT3G49810.1); Has 1273 Blast hits to 1209 proteins in 98 species: Archae - 0; Bacteria - 14; Metazoa - 75; Fungi - 68; Plants - 1026; Viruses - 3; Other Eukaryotes - 87 (source: NCBI BLink).  protein_id AT5G65920.1p  transcript_id AT5G65920.1  protein_id AT5G65920.1p  transcript_id AT5G65920.1  
At5g65925	chr5:026369122	0.0	W/26369122-26369574	AT5G65925.1  CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49820.1); Has 15 Blast hits to 15 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G65925.1p  transcript_id AT5G65925.1  protein_id AT5G65925.1p  transcript_id AT5G65925.1  
At5g65930	chr5:026376255	0.0	C/26376255-26376394,26375936-26376146,26375293-26375859,26375108-26375204,26374843-26375024,26374650-26374765,26374435-26374537,26374162-26374314,26373905-26374051,26373619-26373819,26373192-26373356,26373008-26373112,26372771-26372908,26372491-26372685,26372240-26372366,26371957-26372159,26371689-26371871,26371523-26371618,26371239-26371436,26370647-26370918,26370369-26370549	AT5G65930.1  CDS  gene_syn K14B20.10, K14B20_10, KCBP, KINESIN-LIKE CALMODULIN-BINDING PROTEIN, PKCBP, POTATO KINESIN-LIKE CALMODULIN-BINDING PROTEIN, ZWI, ZWICHEL  gene ZWI  function encodes a novel member of the kinesin superfamily of motor proteins. recessive mutations have reduced number of trichome branches.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process pollen germination|GO:0009846|10375500|IGI  go_process trichome branching|GO:0010091|9177205|IMP  go_function microtubule motor activity|GO:0003777|10375500|TAS  go_function microtubule motor activity|GO:0003777||ISS  go_function calmodulin binding|GO:0005516|11782485|IEP  go_function calmodulin binding|GO:0005516|11782485|TAS  product ZWI (ZWICHEL); calmodulin binding / microtubule motor  note ZWICHEL (ZWI); FUNCTIONS IN: microtubule motor activity, calmodulin binding; INVOLVED IN: trichome branching, pollen germination; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: FERM, 3-helical bundle (InterPro:IPR009065), Prismane-like (InterPro:IPR011254), Unconventional myosin/plant kinesin-like protein/non-motor protein conserved region MyTH4 (InterPro:IPR000857), Kinesin, motor region (InterPro:IPR001752), FERM/acyl-CoA-binding protein, 3-helical bundle (InterPro:IPR014352), FERM domain (InterPro:IPR000299); BEST Arabidopsis thaliana protein match is: kinesin motor protein-related (TAIR:AT2G22610.1); Has 74493 Blast hits to 42083 proteins in 1490 species: Archae - 729; Bacteria - 5860; Metazoa - 38762; Fungi - 4826; Plants - 2658; Viruses - 190; Other Eukaryotes - 21468 (source: NCBI BLink).  protein_id AT5G65930.1p  transcript_id AT5G65930.1  protein_id AT5G65930.1p  transcript_id AT5G65930.1  
At5g65930	chr5:026376255	0.0	C/26376255-26376394,26375936-26376146,26375293-26375859,26375108-26375207,26374843-26375024,26374650-26374765,26374435-26374537,26374162-26374314,26373905-26374051,26373619-26373819,26373192-26373356,26373008-26373112,26372771-26372908,26372491-26372685,26372240-26372366,26371957-26372159,26371689-26371871,26371523-26371618,26371239-26371436,26370647-26370918,26370369-26370549	AT5G65930.2  CDS  gene_syn K14B20.10, K14B20_10, KCBP, KINESIN-LIKE CALMODULIN-BINDING PROTEIN, PKCBP, POTATO KINESIN-LIKE CALMODULIN-BINDING PROTEIN, ZWI, ZWICHEL  gene ZWI  function encodes a novel member of the kinesin superfamily of motor proteins. recessive mutations have reduced number of trichome branches.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process pollen germination|GO:0009846|10375500|IGI  go_process trichome branching|GO:0010091|9177205|IMP  go_function microtubule motor activity|GO:0003777|10375500|TAS  go_function microtubule motor activity|GO:0003777||ISS  go_function calmodulin binding|GO:0005516|11782485|IEP  go_function calmodulin binding|GO:0005516|11782485|TAS  product ZWI (ZWICHEL); calmodulin binding / microtubule motor  note ZWICHEL (ZWI); FUNCTIONS IN: microtubule motor activity, calmodulin binding; INVOLVED IN: trichome branching, pollen germination; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: FERM, 3-helical bundle (InterPro:IPR009065), Prismane-like (InterPro:IPR011254), Unconventional myosin/plant kinesin-like protein/non-motor protein conserved region MyTH4 (InterPro:IPR000857), Kinesin, motor region (InterPro:IPR001752), FERM/acyl-CoA-binding protein, 3-helical bundle (InterPro:IPR014352), FERM domain (InterPro:IPR000299); BEST Arabidopsis thaliana protein match is: kinesin motor protein-related (TAIR:AT2G22610.1); Has 74479 Blast hits to 42088 proteins in 1493 species: Archae - 726; Bacteria - 5858; Metazoa - 38753; Fungi - 4825; Plants - 2658; Viruses - 190; Other Eukaryotes - 21469 (source: NCBI BLink).  protein_id AT5G65930.2p  transcript_id AT5G65930.2  protein_id AT5G65930.2p  transcript_id AT5G65930.2  
At5g65940	chr5:026379132	0.0	C/26379132-26379161,26378976-26379056,26378843-26378911,26378718-26378781,26378563-26378642,26378410-26378493,26378246-26378330,26378078-26378163,26377815-26377936,26377520-26377580,26377324-26377422,26377132-26377257	AT5G65940.2  CDS  gene_syn BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1, CHY1, COA-THIOESTER HYDROLASE, K14B20.11, K14B20_11  gene CHY1  function hydrolyzes beta-hydroxyisobutyryl-CoA  go_process valine catabolic process|GO:0006574|11404361|IDA  go_process fatty acid beta-oxidation|GO:0006635|11404361|TAS  go_process response to auxin stimulus|GO:0009733|11404361|IMP  go_function 3-hydroxyisobutyryl-CoA hydrolase activity|GO:0003860|11404361|IGI  product CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1); 3-hydroxyisobutyryl-CoA hydrolase  note BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1 (CHY1); FUNCTIONS IN: 3-hydroxyisobutyryl-CoA hydrolase activity; INVOLVED IN: response to auxin stimulus, fatty acid beta-oxidation, valine catabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: 3-hydroxyisobutyryl-coenzyme A hydrolase, putative / CoA-thioester hydrolase, putative (TAIR:AT2G30660.1); Has 21695 Blast hits to 21690 proteins in 1276 species: Archae - 178; Bacteria - 12728; Metazoa - 1105; Fungi - 501; Plants - 356; Viruses - 0; Other Eukaryotes - 6827 (source: NCBI BLink).  protein_id AT5G65940.2p  transcript_id AT5G65940.2  protein_id AT5G65940.2p  transcript_id AT5G65940.2  
At5g65940	chr5:026379132	0.0	C/26379132-26379161,26378976-26379056,26378843-26378911,26378718-26378781,26378563-26378642,26378410-26378493,26378246-26378330,26378078-26378163,26377815-26377936,26377520-26377580,26377324-26377422,26377156-26377257,26377038-26377079,26376830-26376961	AT5G65940.1  CDS  gene_syn BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1, CHY1, COA-THIOESTER HYDROLASE, K14B20.11, K14B20_11  gene CHY1  function hydrolyzes beta-hydroxyisobutyryl-CoA  go_process valine catabolic process|GO:0006574|11404361|IDA  go_process fatty acid beta-oxidation|GO:0006635|11404361|TAS  go_process response to auxin stimulus|GO:0009733|11404361|IMP  go_function 3-hydroxyisobutyryl-CoA hydrolase activity|GO:0003860|11404361|IGI  product CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1); 3-hydroxyisobutyryl-CoA hydrolase  note BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1 (CHY1); FUNCTIONS IN: 3-hydroxyisobutyryl-CoA hydrolase activity; INVOLVED IN: response to auxin stimulus, fatty acid beta-oxidation, valine catabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: 3-hydroxyisobutyryl-coenzyme A hydrolase, putative / CoA-thioester hydrolase, putative (TAIR:AT2G30660.1); Has 21776 Blast hits to 21770 proteins in 1276 species: Archae - 178; Bacteria - 12739; Metazoa - 1107; Fungi - 501; Plants - 357; Viruses - 0; Other Eukaryotes - 6894 (source: NCBI BLink).  protein_id AT5G65940.1p  transcript_id AT5G65940.1  protein_id AT5G65940.1p  transcript_id AT5G65940.1  
At5g65940	chr5:026379132	0.0	C/26379132-26379161,26378976-26379056,26378843-26378911,26378718-26378781,26378563-26378642,26378410-26378493,26378246-26378330,26378078-26378163,26377815-26377936,26377520-26377580,26377324-26377422,26377156-26377257,26377038-26377079,26376927-26376950	AT5G65940.3  CDS  gene_syn BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1, CHY1, COA-THIOESTER HYDROLASE, K14B20.11, K14B20_11  gene CHY1  function hydrolyzes beta-hydroxyisobutyryl-CoA  go_process valine catabolic process|GO:0006574|11404361|IDA  go_process fatty acid beta-oxidation|GO:0006635|11404361|TAS  go_process response to auxin stimulus|GO:0009733|11404361|IMP  go_function 3-hydroxyisobutyryl-CoA hydrolase activity|GO:0003860|11404361|IGI  product CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1); 3-hydroxyisobutyryl-CoA hydrolase  note BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1 (CHY1); FUNCTIONS IN: 3-hydroxyisobutyryl-CoA hydrolase activity; INVOLVED IN: response to auxin stimulus, fatty acid beta-oxidation, valine catabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: 3-hydroxyisobutyryl-coenzyme A hydrolase, putative / CoA-thioester hydrolase, putative (TAIR:AT2G30660.1); Has 21715 Blast hits to 21711 proteins in 1276 species: Archae - 178; Bacteria - 12734; Metazoa - 1103; Fungi - 501; Plants - 357; Viruses - 0; Other Eukaryotes - 6842 (source: NCBI BLink).  protein_id AT5G65940.3p  transcript_id AT5G65940.3  protein_id AT5G65940.3p  transcript_id AT5G65940.3  
At5g65950	chr5:026380290	0.0	W/26380290-26380678,26380772-26380833,26380914-26381028,26381109-26381232,26381323-26381403,26381587-26381928,26382185-26382351,26382447-26383288,26383510-26384960	AT5G65950.1  CDS  gene_syn K14B20.12, K14B20_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1683, C-terminal (InterPro:IPR012880); Has 238 Blast hits to 212 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 129; Fungi - 62; Plants - 23; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT5G65950.1p  transcript_id AT5G65950.1  protein_id AT5G65950.1p  transcript_id AT5G65950.1  
At5g65960	chr5:026385413	0.0	W/26385413-26385479,26385547-26385607,26385689-26385824,26385916-26386243,26386424-26386552,26386737-26387197	AT5G65960.1  CDS  gene_syn K2A18.2, K2A18_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 294 Blast hits to 294 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 80; Fungi - 21; Plants - 119; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT5G65960.1p  transcript_id AT5G65960.1  protein_id AT5G65960.1p  transcript_id AT5G65960.1  
At5g65970	chr5:026390207	0.0	C/26390207-26390407,26390079-26390136,26389824-26390008,26389631-26389747,26389498-26389558,26389336-26389424,26389158-26389232,26388994-26389082,26388865-26388914,26388741-26388781,26388496-26388669,26388354-26388389,26388167-26388234,26388015-26388075,26387509-26387913	AT5G65970.1  CDS  gene_syn ATMLO10, K2A18.3, K2A18_3, MILDEW RESISTANCE LOCUS O 10, MLO10  gene MLO10  function A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO10 belongs to the clade III, with AtMLO5, AtMLO7, AtMLO8, and AtMLO9. The gene is expressed in root and cotyledon vascular system, in root-shoot junction and lateral root primordia and in developing siliques, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s  go_component integral to membrane|GO:0016021||IEA  go_process cell death|GO:0008219||IEA  go_component plasma membrane|GO:0005886||ISS  go_process defense response|GO:0006952||ISS  go_process cell death|GO:0008219||ISS  go_function calmodulin binding|GO:0005516||ISS  product MLO10 (MILDEW RESISTANCE LOCUS O 10); calmodulin binding  note MILDEW RESISTANCE LOCUS O 10 (MLO10); FUNCTIONS IN: calmodulin binding; INVOLVED IN: cell death, defense response; LOCATED IN: integral to membrane, plasma membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: seedling growth, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326); BEST Arabidopsis thaliana protein match is: MLO7 (MILDEW RESISTANCE LOCUS O 7); calmodulin binding (TAIR:AT2G17430.1); Has 303 Blast hits to 297 proteins in 35 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 295; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G65970.1p  transcript_id AT5G65970.1  protein_id AT5G65970.1p  transcript_id AT5G65970.1  
At5g65980	chr5:026392444	0.0	W/26392444-26392578,26392670-26392749,26392828-26392952,26393044-26393165,26393256-26393516,26393610-26393710,26393785-26394023,26394108-26394232	AT5G65980.1  CDS  gene_syn K2A18.4, K2A18_4  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process auxin polar transport|GO:0009926||ISS  go_function auxin:hydrogen symporter activity|GO:0009672||ISS  product auxin efflux carrier family protein  note auxin efflux carrier family protein; FUNCTIONS IN: auxin:hydrogen symporter activity; INVOLVED IN: auxin polar transport; LOCATED IN: endomembrane system, integral to membrane; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: auxin efflux carrier family protein (TAIR:AT2G17500.4); Has 358 Blast hits to 340 proteins in 105 species: Archae - 6; Bacteria - 59; Metazoa - 0; Fungi - 147; Plants - 99; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT5G65980.1p  transcript_id AT5G65980.1  protein_id AT5G65980.1p  transcript_id AT5G65980.1  
At5g65990	chr5:026394955	0.0	W/26394955-26395689,26395773-26396321	AT5G65990.1  CDS  gene_syn K2A18.5, K2A18_5  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product amino acid transporter family protein  note amino acid transporter family protein; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid transporter family protein (TAIR:AT2G42005.1); Has 3555 Blast hits to 3473 proteins in 218 species: Archae - 7; Bacteria - 47; Metazoa - 1584; Fungi - 561; Plants - 723; Viruses - 5; Other Eukaryotes - 628 (source: NCBI BLink).  protein_id AT5G65990.1p  transcript_id AT5G65990.1  protein_id AT5G65990.1p  transcript_id AT5G65990.1  
At5g66000	chr5:026396565	0.0	C/26396565-26397212	AT5G66000.1  CDS  gene_syn K2A18.6, K2A18_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; Has 29 Blast hits to 27 proteins in 5 species: Archae - 0; Bacteria - 4; Metazoa - 4; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G66000.1p  transcript_id AT5G66000.1  protein_id AT5G66000.1p  transcript_id AT5G66000.1  
At5g66005	chr5:026398727	0.0	C/26398727-26398812,26398556-26398640,26398321-26398477,26397864-26397979	AT5G66005.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_function ATP binding|GO:0005524||IEA  go_function transferase activity|GO:0016740||IEA  go_process biological_process|GO:0008150||ND  product Expressed protein  note Expressed protein; FUNCTIONS IN: transferase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF265 (InterPro:IPR004948); Has 208 Blast hits to 208 proteins in 87 species: Archae - 58; Bacteria - 25; Metazoa - 83; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT5G66005.1p  transcript_id AT5G66005.1  protein_id AT5G66005.1p  transcript_id AT5G66005.1  
At5g66005	chr5:026399082	0.0	C/26399082-26399123,26398914-26399001,26398727-26398814,26398556-26398640,26398286-26398477	AT5G66005.2  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function transferase activity|GO:0016740||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process biological_process|GO:0008150||ND  product Expressed protein  note Expressed protein; FUNCTIONS IN: nucleoside-triphosphatase activity, transferase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF265 (InterPro:IPR004948), ATPase, AAA+ type, core (InterPro:IPR003593); Has 245 Blast hits to 245 proteins in 103 species: Archae - 83; Bacteria - 23; Metazoa - 87; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT5G66005.2p  transcript_id AT5G66005.2  protein_id AT5G66005.2p  transcript_id AT5G66005.2  
At5g66005	chr5:026399082	0.0	C/26399082-26399123,26398914-26399001,26398727-26398817,26398556-26398640,26398321-26398477,26397864-26397979	AT5G66005.3  CDS  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function transferase activity|GO:0016740||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process biological_process|GO:0008150||ND  product Expressed protein  note Expressed protein; FUNCTIONS IN: nucleoside-triphosphatase activity, transferase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF265 (InterPro:IPR004948), ATPase, AAA+ type, core (InterPro:IPR003593); Has 281 Blast hits to 281 proteins in 116 species: Archae - 85; Bacteria - 47; Metazoa - 87; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT5G66005.3p  transcript_id AT5G66005.3  protein_id AT5G66005.3p  transcript_id AT5G66005.3  
At5g66010	chr5:026399612	0.0	W/26399612-26399628,26400003-26400753	AT5G66010.1  CDS  gene_syn K2A18.8, K2A18_8  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA binding / nucleic acid binding / nucleotide binding  note RNA binding / nucleic acid binding / nucleotide binding; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT3G20890.1); Has 2870 Blast hits to 1043 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 2605; Fungi - 10; Plants - 100; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink).  protein_id AT5G66010.1p  transcript_id AT5G66010.1  protein_id AT5G66010.1p  transcript_id AT5G66010.1  
At5g66020	chr5:026404556	0.0	C/26404556-26404691,26404385-26404468,26404163-26404290,26403966-26404060,26403796-26403853,26403666-26403722,26403548-26403581,26403386-26403466,26403162-26403268,26402951-26403037,26402806-26402883,26402639-26402709,26402450-26402548,26402267-26402366,26402077-26402185,26401920-26401992,26401746-26401839,26401560-26401652,26401403-26401469,26401193-26401323	AT5G66020.1  CDS  gene_syn ATSAC1B, ATSAC6, IBS2, IMPAIRED IN BABA-INDUCED STERILITY 2, K2A18.9, K2A18_9, SAC DOMAIN-CONTAINING PROTEIN 6, SACIB, SUPPRESSOR OF ACTIN 1B  gene ATSAC1B  function Mutants in this gene are unable to express female sterility in response to beta-aminobutyric acid, as wild type plants do. non-consensus AT donor splice site at exon 7, TA donor splice site at exon 10, AT acceptor splice at exon 13.  go_component cellular_component|GO:0005575||ND  go_function phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|GO:0004439||ISS  product ATSAC1B (SUPPRESSOR OF ACTIN 1B); phosphatidylinositol-4,5-bisphosphate 5-phosphatase  note SUPPRESSOR OF ACTIN 1B (ATSAC1B); FUNCTIONS IN: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Synaptojanin, N-terminal (InterPro:IPR002013); BEST Arabidopsis thaliana protein match is: RHD4 (ROOT HAIR DEFECTIVE4); phosphatidylinositol-4,5-bisphosphate 5-phosphatase/ phosphatidylinositol-4-phosphate phosphatase (TAIR:AT3G51460.1); Has 1228 Blast hits to 1163 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 459; Fungi - 371; Plants - 150; Viruses - 0; Other Eukaryotes - 248 (source: NCBI BLink).  protein_id AT5G66020.1p  transcript_id AT5G66020.1  protein_id AT5G66020.1p  transcript_id AT5G66020.1  
At5g66030	chr5:026409483	0.0	C/26409483-26409888,26409278-26409393,26408931-26409100,26408726-26408819,26408481-26408567,26408300-26408380,26408049-26408174,26407614-26407722,26407442-26407521,26407121-26407249,26406933-26407033,26406628-26406761,26406445-26406542,26406265-26406384,26406087-26406135,26405916-26405974,26405699-26405770,26405580-26405627,26405391-26405496,26405133-26405314	AT5G66030.1  CDS  gene_syn ATGRIP, GRIP, K2A18.10, K2A18_10  gene ATGRIP  function Involved in golgi protein trafficking. AtARL1 binds directly to the GRIP domain of AtGRIP in a GTP-dependent manner. Localized to the golgi apparatus, tyrosine 717 in AtGRIP is crucial for Golgi localization.  go_component trans-Golgi network|GO:0005802|16236155|IDA  go_process Golgi vesicle transport|GO:0048193|15221386|TAS  go_function protein binding|GO:0005515|16236155|IPI  product ATGRIP; protein binding  note ATGRIP; FUNCTIONS IN: protein binding; INVOLVED IN: Golgi vesicle transport; LOCATED IN: trans-Golgi network; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053), GRIP (InterPro:IPR000237); BEST Arabidopsis thaliana protein match is: LINC4 (LITTLE NUCLEI4) (TAIR:AT5G65770.1); Has 174981 Blast hits to 80144 proteins in 2397 species: Archae - 1720; Bacteria - 30936; Metazoa - 80619; Fungi - 12718; Plants - 6845; Viruses - 807; Other Eukaryotes - 41336 (source: NCBI BLink).  protein_id AT5G66030.1p  transcript_id AT5G66030.1  protein_id AT5G66030.1p  transcript_id AT5G66030.1  
At5g66030	chr5:026409483	0.0	C/26409483-26409888,26409278-26409393,26408931-26409100,26408726-26408819,26408481-26408567,26408300-26408380,26408049-26408174,26407614-26407722,26407442-26407521,26407121-26407249,26406933-26407033,26406628-26406761,26406445-26406542,26406265-26406384,26406087-26406135,26405916-26405974,26405699-26405770,26405580-26405627,26405391-26405496,26405248-26405314,26405133-26405178	AT5G66030.2  CDS  gene_syn ATGRIP, GRIP, K2A18.10, K2A18_10  gene ATGRIP  function Involved in golgi protein trafficking. AtARL1 binds directly to the GRIP domain of AtGRIP in a GTP-dependent manner. Localized to the golgi apparatus, tyrosine 717 in AtGRIP is crucial for Golgi localization.  go_component trans-Golgi network|GO:0005802|16236155|IDA  go_process Golgi vesicle transport|GO:0048193|15221386|TAS  go_function protein binding|GO:0005515|16236155|IPI  product ATGRIP; protein binding  note ATGRIP; FUNCTIONS IN: protein binding; INVOLVED IN: Golgi vesicle transport; LOCATED IN: trans-Golgi network; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GRIP (InterPro:IPR000237); BEST Arabidopsis thaliana protein match is: LINC4 (LITTLE NUCLEI4) (TAIR:AT5G65770.1); Has 174980 Blast hits to 80096 proteins in 2397 species: Archae - 1722; Bacteria - 30925; Metazoa - 80591; Fungi - 12725; Plants - 6839; Viruses - 807; Other Eukaryotes - 41371 (source: NCBI BLink).  protein_id AT5G66030.2p  transcript_id AT5G66030.2  protein_id AT5G66030.2p  transcript_id AT5G66030.2  
At5g66040	chr5:026410557	0.0	W/26410557-26410645,26410732-26410805,26410869-26410993,26411065-26411139	AT5G66040.1  CDS  gene_syn K2A18.11, K2A18_11, STR16, SULFURTRANSFERASE PROTEIN 16  gene STR16  go_component cellular_component|GO:0005575||ND  go_process aging|GO:0007568||ISS  go_function molecular_function|GO:0003674||ND  product STR16 (SULFURTRANSFERASE PROTEIN 16)  note SULFURTRANSFERASE PROTEIN 16 (STR16); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: SEN1 (SENESCENCE 1) (TAIR:AT4G35770.1); Has 2229 Blast hits to 2226 proteins in 583 species: Archae - 32; Bacteria - 1489; Metazoa - 53; Fungi - 31; Plants - 139; Viruses - 0; Other Eukaryotes - 485 (source: NCBI BLink).  protein_id AT5G66040.1p  transcript_id AT5G66040.1  protein_id AT5G66040.1p  transcript_id AT5G66040.1  
At5g66040	chr5:026410871	0.0	W/26410871-26410993,26411065-26411139	AT5G66040.2  CDS  gene_syn K2A18.11, K2A18_11, STR16, SULFURTRANSFERASE PROTEIN 16  gene STR16  go_component cellular_component|GO:0005575||ND  go_process aging|GO:0007568||ISS  go_function molecular_function|GO:0003674||ND  product STR16 (SULFURTRANSFERASE PROTEIN 16)  note SULFURTRANSFERASE PROTEIN 16 (STR16); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: SEN1 (SENESCENCE 1) (TAIR:AT4G35770.1); Has 163 Blast hits to 163 proteins in 37 species: Archae - 0; Bacteria - 45; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT5G66040.2p  transcript_id AT5G66040.2  protein_id AT5G66040.2p  transcript_id AT5G66040.2  
At5g66045	chr5:026411594	0.0	C/26411594-26411657	AT5G66045.1  miRNA  gene_syn MICRORNA 170, MIR170  gene MIR170  function Encodes a microRNA that targets several SCL family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGAUUGAGCCGUGUCAAUAUC  go_component cellular_component|GO:0005575||ND  go_process gene silencing by miRNA|GO:0035195|15200956|TAS  go_function molecular_function|GO:0003674||ND  product MIR170 (MICRORNA 170); miRNA  transcript_id AT5G66045.1  
At5g66050	chr5:026413626	0.0	C/26413626-26413830,26413492-26413544,26413351-26413407,26413181-26413246,26413023-26413094,26412760-26412866,26412579-26412670,26412458-26412497,26412333-26412381	AT5G66050.2  CDS  gene_syn K2A18.12, K2A18_12  go_component mitochondrion|GO:0005739||IEA  product unknown protein  note LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF151 (InterPro:IPR003729); BEST Arabidopsis thaliana protein match is: wound-responsive family protein (TAIR:AT1G19660.2); Has 338 Blast hits to 338 proteins in 128 species: Archae - 11; Bacteria - 214; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT5G66050.2p  transcript_id AT5G66050.2  protein_id AT5G66050.2p  transcript_id AT5G66050.2  
At5g66050	chr5:026414155	0.0	C/26414155-26414428,26413626-26413838,26413492-26413544,26413351-26413407,26413181-26413246,26413023-26413094,26412760-26412866,26412579-26412670,26412458-26412497,26412333-26412381	AT5G66050.1  CDS  gene_syn K2A18.12, K2A18_12  go_component chloroplast|GO:0009507||IEA  product unknown protein  note LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF151 (InterPro:IPR003729); BEST Arabidopsis thaliana protein match is: wound-responsive family protein (TAIR:AT1G19660.2); Has 338 Blast hits to 338 proteins in 128 species: Archae - 11; Bacteria - 214; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT5G66050.1p  transcript_id AT5G66050.1  protein_id AT5G66050.1p  transcript_id AT5G66050.1  
At5g66052	chr5:026416232	0.0	W/26416232-26416435	AT5G66052.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G66052.1p  transcript_id AT5G66052.1  protein_id AT5G66052.1p  transcript_id AT5G66052.1  
At5g66053	chr5:026416661	0.0	C/26416661-26416807	AT5G66053.1  CDS  go_component mitochondrion|GO:0005739||IEA  product unknown protein  note unknown protein; LOCATED IN: mitochondrion; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G66053.1p  transcript_id AT5G66053.1  protein_id AT5G66053.1p  transcript_id AT5G66053.1  
At5g66055	chr5:026418538	0.0	C/26418538-26419234,26418384-26418460,26418195-26418293,26418000-26418098,26417805-26417912	AT5G66055.2  CDS  gene_syn AKRP, ANKYRIN REPEAT PROTEIN, EMB2036, EMBRYO DEFECTIVE 2036  gene AKRP  go_component chloroplast|GO:0009507|17092312|IDA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function protein binding|GO:0005515||ISS  product AKRP (ANKYRIN REPEAT PROTEIN); protein binding  note ANKYRIN REPEAT PROTEIN (AKRP); FUNCTIONS IN: protein binding; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: EMB506 (embryo defective 506); protein binding (TAIR:AT5G40160.1); Has 16721 Blast hits to 7469 proteins in 320 species: Archae - 33; Bacteria - 876; Metazoa - 7720; Fungi - 726; Plants - 326; Viruses - 145; Other Eukaryotes - 6895 (source: NCBI BLink).  protein_id AT5G66055.2p  transcript_id AT5G66055.2  protein_id AT5G66055.2p  transcript_id AT5G66055.2  
At5g66055	chr5:026418538	0.0	C/26418538-26419234,26418384-26418460,26418195-26418293,26418000-26418098,26417814-26417912,26417636-26417734,26417425-26417562	AT5G66055.1  CDS  gene_syn AKRP, ANKYRIN REPEAT PROTEIN, EMB2036, EMBRYO DEFECTIVE 2036  gene AKRP  go_component chloroplast|GO:0009507|17092312|IDA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function protein binding|GO:0005515||ISS  product AKRP (ANKYRIN REPEAT PROTEIN); protein binding  note ANKYRIN REPEAT PROTEIN (AKRP); FUNCTIONS IN: protein binding; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: EMB506 (embryo defective 506); protein binding (TAIR:AT5G40160.1); Has 70206 Blast hits to 22501 proteins in 882 species: Archae - 85; Bacteria - 4541; Metazoa - 37898; Fungi - 4361; Plants - 1873; Viruses - 1166; Other Eukaryotes - 20282 (source: NCBI BLink).  protein_id AT5G66055.1p  transcript_id AT5G66055.1  protein_id AT5G66055.1p  transcript_id AT5G66055.1  
At5g66060	chr5:026419481	0.0	W/26419481-26419677,26419764-26419848,26420113-26420210,26420305-26420402,26420524-26420653,26420735-26420922,26421045-26421118	AT5G66060.1  CDS  gene_syn K2A18.14, K2A18_14  go_process protein metabolic process|GO:0019538||IEA  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||IEA  go_process peptidyl-proline hydroxylation to 4-hydroxy-L-proline|GO:0018401||ISS  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors  note iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding; INVOLVED IN: protein metabolic process, peptidyl-proline hydroxylation to 4-hydroxy-L-proline; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT2G17720.1); Has 1779 Blast hits to 1774 proteins in 217 species: Archae - 0; Bacteria - 195; Metazoa - 891; Fungi - 57; Plants - 219; Viruses - 14; Other Eukaryotes - 403 (source: NCBI BLink).  protein_id AT5G66060.1p  transcript_id AT5G66060.1  protein_id AT5G66060.1p  transcript_id AT5G66060.1  
At5g66070	chr5:026421923	0.0	W/26421923-26422049,26422169-26422347,26422435-26422518,26422591-26422743,26422911-26423033	AT5G66070.1  CDS  gene_syn K2A18.15, K2A18_15  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process response to chitin|GO:0010200|17722694|IEP  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G17730.1); Has 6340 Blast hits to 6317 proteins in 219 species: Archae - 0; Bacteria - 10; Metazoa - 2072; Fungi - 522; Plants - 2726; Viruses - 36; Other Eukaryotes - 974 (source: NCBI BLink).  protein_id AT5G66070.1p  transcript_id AT5G66070.1  protein_id AT5G66070.1p  transcript_id AT5G66070.1  
At5g66070	chr5:026421923	0.0	W/26421923-26422049,26422169-26422347,26422435-26422743,26422911-26423033	AT5G66070.2  CDS  gene_syn K2A18.15, K2A18_15  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process response to chitin|GO:0010200|17722694|IEP  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G17730.1); Has 6323 Blast hits to 6301 proteins in 219 species: Archae - 0; Bacteria - 10; Metazoa - 2057; Fungi - 523; Plants - 2725; Viruses - 36; Other Eukaryotes - 972 (source: NCBI BLink).  protein_id AT5G66070.2p  transcript_id AT5G66070.2  protein_id AT5G66070.2p  transcript_id AT5G66070.2  
At5g66080	chr5:026424710	0.0	C/26424710-26425031,26424263-26424630,26423883-26424119,26423577-26423807	AT5G66080.1  CDS  gene_syn K2A18.16, K2A18_16  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C family protein / PP2C family protein  note protein phosphatase 2C family protein / PP2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT3G51370.1); Has 3605 Blast hits to 3604 proteins in 217 species: Archae - 0; Bacteria - 11; Metazoa - 1260; Fungi - 366; Plants - 1225; Viruses - 5; Other Eukaryotes - 738 (source: NCBI BLink).  protein_id AT5G66080.1p  transcript_id AT5G66080.1  protein_id AT5G66080.1p  transcript_id AT5G66080.1  
At5g66090	chr5:026425831	0.0	W/26425831-26425996,26426225-26426361,26426438-26426495,26426589-26426666,26426762-26426955	AT5G66090.1  CDS  gene_syn K2A18.17, K2A18_17  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G66090.1p  transcript_id AT5G66090.1  protein_id AT5G66090.1p  transcript_id AT5G66090.1  
At5g66100	chr5:026427639	0.0	W/26427639-26428046,26428273-26428762,26428840-26428984,26429117-26429207,26429420-26429491,26429617-26429772	AT5G66100.1  CDS  gene_syn K2A18.18, K2A18_18  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product La domain-containing protein  note La domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630); BEST Arabidopsis thaliana protein match is: La domain-containing protein (TAIR:AT4G35890.1); Has 14253 Blast hits to 4987 proteins in 345 species: Archae - 17; Bacteria - 1528; Metazoa - 3261; Fungi - 1497; Plants - 230; Viruses - 36; Other Eukaryotes - 7684 (source: NCBI BLink).  protein_id AT5G66100.1p  transcript_id AT5G66100.1  protein_id AT5G66100.1p  transcript_id AT5G66100.1  
At5g66110	chr5:026430245	0.0	W/26430245-26430301,26430392-26430778	AT5G66110.1  CDS  gene_syn K2A18.19, K2A18_19  go_component plasma membrane|GO:0005886|17644812|IDA  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_function metal ion binding|GO:0046872||ISS  product metal ion binding  note metal ion binding; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: ATFP6 (FARNESYLATED PROTEIN 6); metal ion binding (TAIR:AT4G38580.1); Has 666 Blast hits to 607 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 3; Plants - 661; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G66110.1p  transcript_id AT5G66110.1  protein_id AT5G66110.1p  transcript_id AT5G66110.1  
At5g66120	chr5:026432921	0.0	C/26432921-26433079,26432664-26432831,26432335-26432561,26432120-26432243,26431976-26432038,26431750-26431893,26431516-26431647	AT5G66120.1  CDS  gene_syn K2A18.20, K2A18_20  go_component chloroplast|GO:0009507|18431481|IDA  go_process biosynthetic process|GO:0009058||IEA  go_process aromatic amino acid family biosynthetic process|GO:0009073||IEA  go_function 3-dehydroquinate synthase activity|GO:0003856||IEA  go_function carbon-oxygen lyase activity, acting on phosphates|GO:0016838||IEA  product 3-dehydroquinate synthase, putative  note 3-dehydroquinate synthase, putative; FUNCTIONS IN: 3-dehydroquinate synthase activity, carbon-oxygen lyase activity, acting on phosphates; INVOLVED IN: aromatic amino acid family biosynthetic process, biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 3-dehydroquinate synthase AroB, subgroup (InterPro:IPR016037), 3-dehydroquinate synthase (InterPro:IPR016303), 3-dehydroquinate synthase AroB (InterPro:IPR002658); Has 5824 Blast hits to 5822 proteins in 1401 species: Archae - 115; Bacteria - 2765; Metazoa - 7; Fungi - 133; Plants - 27; Viruses - 2; Other Eukaryotes - 2775 (source: NCBI BLink).  protein_id AT5G66120.1p  transcript_id AT5G66120.1  protein_id AT5G66120.1p  transcript_id AT5G66120.1  
At5g66120	chr5:026433330	0.0	C/26433330-26433649,26432921-26433071,26432664-26432831,26432335-26432561,26432120-26432243,26431976-26432038,26431750-26431893,26431516-26431647	AT5G66120.2  CDS  gene_syn K2A18.20, K2A18_20  go_component chloroplast|GO:0009507|18431481|IDA  go_process aromatic amino acid family biosynthetic process|GO:0009073||IEA  go_function 3-dehydroquinate synthase activity|GO:0003856||IEA  product 3-dehydroquinate synthase, putative  note 3-dehydroquinate synthase, putative; FUNCTIONS IN: 3-dehydroquinate synthase activity; INVOLVED IN: aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 3-dehydroquinate synthase AroB, subgroup (InterPro:IPR016037), 3-dehydroquinate synthase AroB (InterPro:IPR002658); Has 5882 Blast hits to 5880 proteins in 1401 species: Archae - 124; Bacteria - 2775; Metazoa - 7; Fungi - 133; Plants - 27; Viruses - 2; Other Eukaryotes - 2814 (source: NCBI BLink).  protein_id AT5G66120.2p  transcript_id AT5G66120.2  protein_id AT5G66120.2p  transcript_id AT5G66120.2  
At5g66130	chr5:026434236	0.0	W/26434236-26434424,26434535-26434592,26434727-26434812,26434898-26434945,26435040-26435199,26435317-26435627,26435716-26436079,26436157-26436282,26436442-26436640,26436732-26436792,26436894-26437091	AT5G66130.1  CDS  gene_syn ARABIDOPSIS THALIANA RADIATION SENSITIVE, ATRAD17, K2A18.21, K2A18_21, RAD17, RADIATION SENSITIVE 17  gene ATRAD17  function Encodes a homolog to yeast RAD17. Involved in the regulation of DNA damage repair and homologous recombination. Mutant has increased sensitivity to MMS and increased telomere lengths.  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of DNA repair|GO:0006282|15165187|IMP  product ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE)  note ARABIDOPSIS THALIANA RADIATION SENSITIVE (ATRAD17); INVOLVED IN: regulation of DNA repair; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Checkpoint protein Rad24 (InterPro:IPR004582); BEST Arabidopsis thaliana protein match is: nucleoside-triphosphatase/ nucleotide binding (TAIR:AT1G77620.1); Has 1063 Blast hits to 1062 proteins in 232 species: Archae - 176; Bacteria - 0; Metazoa - 283; Fungi - 222; Plants - 54; Viruses - 10; Other Eukaryotes - 318 (source: NCBI BLink).  protein_id AT5G66130.1p  transcript_id AT5G66130.1  protein_id AT5G66130.1p  transcript_id AT5G66130.1  
At5g66140	chr5:026438505	0.0	C/26438505-26438677,26437705-26438119,26437445-26437609	AT5G66140.1  CDS  gene_syn 20S PROTEASOME SUBUNIT PAD2, K2A18.22, K2A18_22, PAD2, PROTEASOME ALPHA SUBUNIT D 2  gene PAD2  function Encodes alpha5 subunit of 20S proteosome complex involved in protein degradation.  go_component vacuole|GO:0005773|15215502|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_function endopeptidase activity|GO:0004175||IEA  go_function threonine-type endopeptidase activity|GO:0004298||IEA  go_component proteasome core complex|GO:0005839|9373170|TAS  go_component proteasome core complex|GO:0005839|9611183|TAS  go_component proteasome core complex, alpha-subunit complex|GO:0019773|9611183|ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|9611183|TAS  go_function peptidase activity|GO:0008233||ISS  product PAD2 (PROTEASOME ALPHA SUBUNIT D 2); endopeptidase/ peptidase/ threonine-type endopeptidase  note PROTEASOME ALPHA SUBUNIT D 2 (PAD2); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome core complex, alpha-subunit complex, chloroplast, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome alpha-subunit, conserved site (InterPro:IPR000426), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: PAD1 (20s proteasome alpha subunit pad1); endopeptidase/ peptidase/ threonine-type endopeptidase (TAIR:AT3G51260.1); Has 4278 Blast hits to 4278 proteins in 342 species: Archae - 484; Bacteria - 0; Metazoa - 1564; Fungi - 963; Plants - 510; Viruses - 0; Other Eukaryotes - 757 (source: NCBI BLink).  protein_id AT5G66140.1p  transcript_id AT5G66140.1  protein_id AT5G66140.1p  transcript_id AT5G66140.1  
At5g66150	chr5:026444204	0.0	C/26444204-26444434,26444024-26444107,26443852-26443940,26443603-26443777,26443334-26443537,26443195-26443266,26442998-26443111,26442805-26442905,26442611-26442704,26442342-26442509,26442176-26442265,26441924-26441992,26441791-26441847,26441489-26441708,26441262-26441398,26441031-26441162,26440719-26440835,26440559-26440606,26440351-26440476,26440195-26440260,26439975-26440087,26439799-26439883,26439470-26439724,26439331-26439399,26439013-26439240	AT5G66150.1  CDS  gene_syn K2A18.23, K2A18_23  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process mannose metabolic process|GO:0006013||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function alpha-mannosidase activity|GO:0004559||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function mannosidase activity|GO:0015923||IEA  go_function carbohydrate binding|GO:0030246||IEA  go_function alpha-mannosidase activity|GO:0004559||ISS  product glycosyl hydrolase family 38 protein  note glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, leaf whorl, petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central region (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 38 protein (TAIR:AT3G26720.1); Has 1123 Blast hits to 1086 proteins in 215 species: Archae - 8; Bacteria - 257; Metazoa - 604; Fungi - 50; Plants - 73; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).  protein_id AT5G66150.1p  transcript_id AT5G66150.1  protein_id AT5G66150.1p  transcript_id AT5G66150.1  
At5g66160	chr5:026445198	0.0	W/26445198-26445327,26445414-26445650,26445796-26446185,26446607-26446704,26446801-26446878	AT5G66160.1  CDS  gene_syn ATRMR1, Arabidopsis thaliana receptor homology region transmembrane domain ring H2 motif protein 1, JR700, K2A18.24, K2A18_24, REMEMBR-H2 PROTEIN JR700  gene JR700  function Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles.  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component extrinsic to vacuolar membrane|GO:0000306|16115960|IDA  go_process intracellular protein transport|GO:0006886|16115960|IDA  go_function protein binding|GO:0005515||ISS  go_function peptidase activity|GO:0008233||ISS  go_function zinc ion binding|GO:0008270||ISS  product JR700; peptidase/ protein binding / zinc ion binding  note JR700; FUNCTIONS IN: peptidase activity, protein binding, zinc ion binding; INVOLVED IN: intracellular protein transport; LOCATED IN: extrinsic to vacuolar membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protease-associated zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G71980.1); Has 6532 Blast hits to 6506 proteins in 268 species: Archae - 0; Bacteria - 128; Metazoa - 2128; Fungi - 506; Plants - 2722; Viruses - 8; Other Eukaryotes - 1040 (source: NCBI BLink).  protein_id AT5G66160.1p  transcript_id AT5G66160.1  protein_id AT5G66160.1p  transcript_id AT5G66160.1  
At5g66160	chr5:026445198	0.0	W/26445198-26445327,26445414-26445650,26445796-26446185,26446607-26446722	AT5G66160.2  CDS  gene_syn ATRMR1, Arabidopsis thaliana receptor homology region transmembrane domain ring H2 motif protein 1, JR700, K2A18.24, K2A18_24, REMEMBR-H2 PROTEIN JR700  gene JR700  function Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles.  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component extrinsic to vacuolar membrane|GO:0000306|16115960|IDA  go_process intracellular protein transport|GO:0006886|16115960|IDA  go_function protein binding|GO:0005515||ISS  go_function peptidase activity|GO:0008233||ISS  go_function zinc ion binding|GO:0008270||ISS  product JR700; peptidase/ protein binding / zinc ion binding  note JR700; FUNCTIONS IN: peptidase activity, protein binding, zinc ion binding; INVOLVED IN: intracellular protein transport; LOCATED IN: extrinsic to vacuolar membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protease-associated zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G71980.1); Has 6494 Blast hits to 6468 proteins in 268 species: Archae - 0; Bacteria - 128; Metazoa - 2125; Fungi - 490; Plants - 2725; Viruses - 8; Other Eukaryotes - 1018 (source: NCBI BLink).  protein_id AT5G66160.2p  transcript_id AT5G66160.2  protein_id AT5G66160.2p  transcript_id AT5G66160.2  
At5g66170	chr5:026447828	0.0	W/26447828-26447934,26448018-26448097,26448176-26448246,26448339-26448396,26448488-26448582	AT5G66170.1  CDS  gene_syn K2A18.25, K2A18_25  go_component cellular_component|GO:0005575||ND  go_process aging|GO:0007568||ISS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17850.1); Has 126 Blast hits to 126 proteins in 29 species: Archae - 2; Bacteria - 25; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G66170.1p  transcript_id AT5G66170.1  protein_id AT5G66170.1p  transcript_id AT5G66170.1  
At5g66170	chr5:026447828	0.0	W/26447828-26447934,26448018-26448097,26448176-26448246,26448339-26448398,26448488-26448586	AT5G66170.2  CDS  gene_syn K2A18.25, K2A18_25  go_component cellular_component|GO:0005575||ND  go_process aging|GO:0007568||ISS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17850.1); Has 730 Blast hits to 728 proteins in 227 species: Archae - 18; Bacteria - 429; Metazoa - 13; Fungi - 9; Plants - 103; Viruses - 0; Other Eukaryotes - 158 (source: NCBI BLink).  protein_id AT5G66170.2p  transcript_id AT5G66170.2  protein_id AT5G66170.2p  transcript_id AT5G66170.2  
At5g66180	chr5:026448952	0.0	W/26448952-26449064,26449140-26449284,26449368-26449458,26449549-26449734,26449830-26450059,26450137-26450271,26450358-26450425,26450524-26450585,26450762-26450919	AT5G66180.1  CDS  gene_syn K2A18.26, K2A18_26  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678); BEST Arabidopsis thaliana protein match is: NOL1/NOP2/sun family protein (TAIR:AT1G06560.1); Has 5021 Blast hits to 4182 proteins in 1157 species: Archae - 270; Bacteria - 3133; Metazoa - 499; Fungi - 156; Plants - 103; Viruses - 0; Other Eukaryotes - 860 (source: NCBI BLink).  protein_id AT5G66180.1p  transcript_id AT5G66180.1  protein_id AT5G66180.1p  transcript_id AT5G66180.1  
At5g66180	chr5:026448952	0.0	W/26448952-26449064,26449140-26449284,26449368-26449458,26449549-26449734,26449830-26450059,26450137-26450271,26450358-26450429	AT5G66180.2  CDS  gene_syn K2A18.26, K2A18_26  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1445 Blast hits to 1393 proteins in 514 species: Archae - 130; Bacteria - 823; Metazoa - 164; Fungi - 44; Plants - 38; Viruses - 0; Other Eukaryotes - 246 (source: NCBI BLink).  protein_id AT5G66180.2p  transcript_id AT5G66180.2  protein_id AT5G66180.2p  transcript_id AT5G66180.2  
At5g66180	chr5:026449010	0.0	W/26449010-26449059,26449140-26449284,26449368-26449458,26449549-26449734,26449830-26450059,26450137-26450271,26450358-26450425,26450524-26450585,26450762-26450919	AT5G66180.3  CDS  gene_syn K2A18.26, K2A18_26  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678); BEST Arabidopsis thaliana protein match is: NOL1/NOP2/sun family protein (TAIR:AT1G06560.1); Has 4894 Blast hits to 4168 proteins in 1153 species: Archae - 264; Bacteria - 3020; Metazoa - 496; Fungi - 156; Plants - 99; Viruses - 0; Other Eukaryotes - 859 (source: NCBI BLink).  protein_id AT5G66180.3p  transcript_id AT5G66180.3  protein_id AT5G66180.3p  transcript_id AT5G66180.3  
At5g66190	chr5:026452572	0.0	C/26452572-26452616,26452350-26452478,26452187-26452265,26452012-26452103,26451833-26451910,26451676-26451738,26451358-26451592,26451203-26451270	AT5G66190.2  CDS  gene_syn ATLFNR1, FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1, FERREDOXIN:NADP(H) OXIDOREDUCTASE, FNR1, K2A18.27, K2A18_27, LEAF FNR 1  gene FNR1  function Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the thylakoid. The affinity of this enzyme for ferredoxin is slightly, but significantly, higher than AtLFNR2, an isoform of the same enzyme. AtLFNR1 forms a heterodimer with AtFNR2 and is also a prerequisite to attach AtFNR2 to the thylakoid membrane.  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast thylakoid membrane|GO:0009535||IDA  go_component chloroplast stroma|GO:0009570||IDA  go_process oxidation reduction|GO:0055114||IDA  go_function NADPH dehydrogenase activity|GO:0003959||IDA  go_function poly(U) binding|GO:0008266|17511964|IDA  go_function oxidoreductase activity|GO:0016491||ISS  go_function electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity|GO:0045156|17335513|IDA  go_function electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity|GO:0045157|17335513|IDA  product FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1); NADPH dehydrogenase/ electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis/ electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis/ oxidoreductase/ poly(U) binding  note LEAF FNR 1 (ATLFNR1); FUNCTIONS IN: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, oxidoreductase activity, poly(U) binding, NADPH dehydrogenase activity, electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity; INVOLVED IN: oxidation reduction, defense response to bacterium; LOCATED IN: thylakoid, chloroplast thylakoid membrane, apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), Ferredoxin--NADP reductase (InterPro:IPR012146); BEST Arabidopsis thaliana protein match is: FNR2 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 2); NADPH dehydrogenase/ oxidoreductase/ poly(U) binding (TAIR:AT1G20020.3); Has 5127 Blast hits to 5127 proteins in 1098 species: Archae - 12; Bacteria - 2364; Metazoa - 690; Fungi - 569; Plants - 438; Viruses - 0; Other Eukaryotes - 1054 (source: NCBI BLink).  protein_id AT5G66190.2p  transcript_id AT5G66190.2  protein_id AT5G66190.2p  transcript_id AT5G66190.2  
At5g66190	chr5:026452908	0.0	C/26452908-26453012,26452572-26452800,26452350-26452483,26452187-26452265,26452012-26452103,26451833-26451910,26451676-26451738,26451358-26451592,26451203-26451270	AT5G66190.1  CDS  gene_syn ATLFNR1, FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1, FERREDOXIN:NADP(H) OXIDOREDUCTASE, FNR1, K2A18.27, K2A18_27, LEAF FNR 1  gene FNR1  function Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the thylakoid. The affinity of this enzyme for ferredoxin is slightly, but significantly, higher than AtLFNR2, an isoform of the same enzyme. AtLFNR1 forms a heterodimer with AtFNR2 and is also a prerequisite to attach AtFNR2 to the thylakoid membrane.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_component chloroplast thylakoid membrane|GO:0009535||IDA  go_component chloroplast stroma|GO:0009570||IDA  go_process oxidation reduction|GO:0055114||IDA  go_function NADPH dehydrogenase activity|GO:0003959||IDA  go_function poly(U) binding|GO:0008266|17511964|IDA  go_function oxidoreductase activity|GO:0016491||ISS  go_function electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity|GO:0045156|17335513|IDA  go_function electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity|GO:0045157|17335513|IDA  product FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1); NADPH dehydrogenase/ electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis/ electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis/ oxidoreductase/ poly(U) binding  note FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1 (FNR1); FUNCTIONS IN: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, oxidoreductase activity, poly(U) binding, NADPH dehydrogenase activity, electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity; INVOLVED IN: oxidation reduction, defense response to bacterium; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), Ferredoxin--NADP reductase (InterPro:IPR012146); BEST Arabidopsis thaliana protein match is: FNR2 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 2); NADPH dehydrogenase/ oxidoreductase/ poly(U) binding (TAIR:AT1G20020.1); Has 5178 Blast hits to 5177 proteins in 1104 species: Archae - 12; Bacteria - 2394; Metazoa - 690; Fungi - 567; Plants - 442; Viruses - 0; Other Eukaryotes - 1073 (source: NCBI BLink).  protein_id AT5G66190.1p  transcript_id AT5G66190.1  protein_id AT5G66190.1p  transcript_id AT5G66190.1  
At5g66200	chr5:026453648	0.0	C/26453648-26455603	AT5G66200.1  CDS  gene_syn ARMADILLO REPEAT ONLY 2, ARO2, K2A18.28, K2A18_28  gene ARO2  function Armadillo repeat protein. One of a family of four in Arabidopsis. Expressed in vegetative tissues, anthers and ovules.  go_component plasma membrane|GO:0005886|17317660|IDA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product ARO2 (ARMADILLO REPEAT ONLY 2); binding  note ARMADILLO REPEAT ONLY 2 (ARO2); FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARO1 (ARMADILLO REPEAT ONLY 1); binding (TAIR:AT4G34940.1); Has 421 Blast hits to 389 proteins in 61 species: Archae - 0; Bacteria - 2; Metazoa - 74; Fungi - 41; Plants - 256; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT5G66200.1p  transcript_id AT5G66200.1  protein_id AT5G66200.1p  transcript_id AT5G66200.1  
At5g66210	chr5:026459144	0.0	C/26459144-26459434,26458752-26458882,26458629-26458670,26458416-26458527,26458248-26458326,26457986-26458155,26457766-26457892,26457565-26457680,26457373-26457480,26457145-26457276	AT5G66210.4  CDS  gene_syn CPK28, K2A18.29, K2A18_29  gene CPK28  function member of Calcium Dependent Protein Kinase  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  product CPK28; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note CPK28; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), Tyrosine protein kinase (InterPro:IPR001245), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CPK16; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT2G17890.1); Has 83846 Blast hits to 82573 proteins in 1929 species: Archae - 73; Bacteria - 7987; Metazoa - 35313; Fungi - 8265; Plants - 14948; Viruses - 416; Other Eukaryotes - 16844 (source: NCBI BLink).  protein_id AT5G66210.4p  transcript_id AT5G66210.4  protein_id AT5G66210.4p  transcript_id AT5G66210.4  
At5g66210	chr5:026459144	0.0	C/26459144-26459434,26458752-26458882,26458629-26458670,26458416-26458527,26458248-26458326,26457986-26458155,26457766-26457892,26457565-26457680,26457373-26457480,26457214-26457276,26456935-26457108,26456476-26456529	AT5G66210.3  CDS  gene_syn CPK28, K2A18.29, K2A18_29  gene CPK28  function member of Calcium Dependent Protein Kinase  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  product CPK28; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ protein kinase/ protein serine/threonine kinase  note CPK28; FUNCTIONS IN: protein serine/threonine kinase activity, calmodulin-dependent protein kinase activity, protein kinase activity, ATP binding, calcium ion binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CPK16; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT2G17890.1); Has 90811 Blast hits to 88608 proteins in 2547 species: Archae - 73; Bacteria - 7954; Metazoa - 38742; Fungi - 10162; Plants - 15915; Viruses - 416; Other Eukaryotes - 17549 (source: NCBI BLink).  protein_id AT5G66210.3p  transcript_id AT5G66210.3  protein_id AT5G66210.3p  transcript_id AT5G66210.3  
At5g66210	chr5:026459144	0.0	C/26459144-26459434,26458752-26458882,26458629-26458670,26458416-26458527,26458248-26458326,26457986-26458155,26457766-26457892,26457565-26457680,26457373-26457480,26457214-26457276,26456935-26457108,26456681-26456839	AT5G66210.1  CDS  gene_syn CPK28, K2A18.29, K2A18_29  gene CPK28  function member of Calcium Dependent Protein Kinase  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  product CPK28; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ protein kinase/ protein serine/threonine kinase  note CPK28; FUNCTIONS IN: protein serine/threonine kinase activity, calmodulin-dependent protein kinase activity, protein kinase activity, calcium ion binding, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CPK16; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT2G17890.1); Has 92286 Blast hits to 90086 proteins in 2583 species: Archae - 73; Bacteria - 8011; Metazoa - 39656; Fungi - 10213; Plants - 16127; Viruses - 416; Other Eukaryotes - 17790 (source: NCBI BLink).  protein_id AT5G66210.1p  transcript_id AT5G66210.1  protein_id AT5G66210.1p  transcript_id AT5G66210.1  
At5g66210	chr5:026459144	0.0	C/26459144-26459434,26458752-26458882,26458629-26458670,26458416-26458527,26458248-26458326,26457986-26458155,26457766-26457892,26457565-26457680,26457373-26457480,26457214-26457276,26456935-26457108,26456681-26456839	AT5G66210.2  CDS  gene_syn CPK28, K2A18.29, K2A18_29  gene CPK28  function member of Calcium Dependent Protein Kinase  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  product CPK28; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ protein kinase/ protein serine/threonine kinase  note CPK28; FUNCTIONS IN: protein serine/threonine kinase activity, calmodulin-dependent protein kinase activity, protein kinase activity, ATP binding, calcium ion binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CPK16; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT2G17890.1); Has 92286 Blast hits to 90086 proteins in 2583 species: Archae - 73; Bacteria - 8011; Metazoa - 39656; Fungi - 10213; Plants - 16127; Viruses - 416; Other Eukaryotes - 17790 (source: NCBI BLink).  protein_id AT5G66210.2p  transcript_id AT5G66210.2  protein_id AT5G66210.2p  transcript_id AT5G66210.2  
At5g66211	chr5:026459720	0.0	C/26459720-26459830	AT5G66211.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G66211.1p  transcript_id AT5G66211.1  protein_id AT5G66211.1p  transcript_id AT5G66211.1  
At5g66220	chr5:026461422	0.0	W/26461422-26461512,26461655-26461878,26461965-26462174	AT5G66220.1  CDS  gene_syn K2A18.30, K2A18_30  go_process flavonoid biosynthetic process|GO:0009813|1354004|IMP  go_function chalcone isomerase activity|GO:0045430|1354004|IMP  product chalcone isomerase  note chalcone isomerase; FUNCTIONS IN: chalcone isomerase activity; INVOLVED IN: flavonoid biosynthetic process; CONTAINS InterPro DOMAIN/s: Chalcone isomerase, subgroup (InterPro:IPR003466), Chalcone isomerase, 3-layer sandwich (InterPro:IPR016088), Chalcone isomerase (InterPro:IPR016087); BEST Arabidopsis thaliana protein match is: TT5 (TRANSPARENT TESTA 5); chalcone isomerase (TAIR:AT3G55120.1); Has 313 Blast hits to 313 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 313; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G66220.1p  transcript_id AT5G66220.1  protein_id AT5G66220.1p  transcript_id AT5G66220.1  
At5g66230	chr5:026462704	0.0	W/26462704-26462779,26462869-26463287,26463379-26463873	AT5G66230.1  CDS  gene_syn K2A18.31, K2A18_31  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51230.1); Has 505 Blast hits to 481 proteins in 67 species: Archae - 0; Bacteria - 16; Metazoa - 242; Fungi - 56; Plants - 55; Viruses - 8; Other Eukaryotes - 128 (source: NCBI BLink).  protein_id AT5G66230.1p  transcript_id AT5G66230.1  protein_id AT5G66230.1p  transcript_id AT5G66230.1  
At5g66240	chr5:026466268	0.0	W/26466268-26466274,26466364-26466443,26466530-26466630,26466720-26466820,26466900-26466966,26467053-26467152,26467230-26467343,26467479-26467616,26467724-26467808,26467907-26467956,26468058-26468201	AT5G66240.1  CDS  gene_syn K1L20.2, K1L20_2  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G14530.1); Has 16345 Blast hits to 9303 proteins in 380 species: Archae - 34; Bacteria - 3342; Metazoa - 6654; Fungi - 3003; Plants - 1110; Viruses - 0; Other Eukaryotes - 2202 (source: NCBI BLink).  protein_id AT5G66240.1p  transcript_id AT5G66240.1  protein_id AT5G66240.1p  transcript_id AT5G66240.1  
At5g66240	chr5:026466348	0.0	W/26466348-26466443,26466530-26466630,26466720-26466820,26466900-26466966,26467053-26467152,26467230-26467343,26467479-26467616,26467724-26467808,26467907-26467956,26468058-26468201	AT5G66240.2  CDS  gene_syn K1L20.2, K1L20_2  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G14530.1); Has 16339 Blast hits to 9309 proteins in 380 species: Archae - 34; Bacteria - 3341; Metazoa - 6649; Fungi - 3004; Plants - 1107; Viruses - 0; Other Eukaryotes - 2204 (source: NCBI BLink).  protein_id AT5G66240.2p  transcript_id AT5G66240.2  protein_id AT5G66240.2p  transcript_id AT5G66240.2  
At5g66250	chr5:026469050	0.0	W/26469050-26469801,26470208-26470376	AT5G66250.1  CDS  gene_syn K1L20.3, K1L20_3  go_process biological_process|GO:0008150||ND  product kinectin-related  note kinectin-related; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17990.1); Has 2976 Blast hits to 2536 proteins in 302 species: Archae - 62; Bacteria - 209; Metazoa - 1732; Fungi - 207; Plants - 142; Viruses - 26; Other Eukaryotes - 598 (source: NCBI BLink).  protein_id AT5G66250.1p  transcript_id AT5G66250.1  protein_id AT5G66250.1p  transcript_id AT5G66250.1  
At5g66250	chr5:026469050	0.0	W/26469050-26469801,26470208-26470376	AT5G66250.2  CDS  gene_syn K1L20.3, K1L20_3  go_process biological_process|GO:0008150||ND  product kinectin-related  note kinectin-related; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17990.1); Has 2976 Blast hits to 2536 proteins in 302 species: Archae - 62; Bacteria - 209; Metazoa - 1732; Fungi - 207; Plants - 142; Viruses - 26; Other Eukaryotes - 598 (source: NCBI BLink).  protein_id AT5G66250.2p  transcript_id AT5G66250.2  protein_id AT5G66250.2p  transcript_id AT5G66250.2  
At5g66250	chr5:026469050	0.0	W/26469050-26469801,26470208-26470376	AT5G66250.3  CDS  gene_syn K1L20.3, K1L20_3  go_process biological_process|GO:0008150||ND  product kinectin-related  note kinectin-related; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17990.1); Has 2976 Blast hits to 2536 proteins in 302 species: Archae - 62; Bacteria - 209; Metazoa - 1732; Fungi - 207; Plants - 142; Viruses - 26; Other Eukaryotes - 598 (source: NCBI BLink).  protein_id AT5G66250.3p  transcript_id AT5G66250.3  protein_id AT5G66250.3p  transcript_id AT5G66250.3  
At5g66260	chr5:026471269	0.0	W/26471269-26471457,26471548-26471658	AT5G66260.1  CDS  gene_syn K1L20.4, K1L20_4  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive protein, putative  note auxin-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT4G36110.1); Has 696 Blast hits to 685 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 695; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G66260.1p  transcript_id AT5G66260.1  protein_id AT5G66260.1p  transcript_id AT5G66260.1  
At5g66270	chr5:026475507	0.0	C/26475507-26475566,26474830-26474964,26474616-26474740,26473507-26474536	AT5G66270.1  CDS  gene_syn K1L20.5, K1L20_5  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc finger (CCCH-type) family protein  note zinc finger (CCCH-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein (TAIR:AT3G51180.1); Has 103 Blast hits to 95 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G66270.1p  transcript_id AT5G66270.1  protein_id AT5G66270.1p  transcript_id AT5G66270.1  
At5g66280	chr5:026476434	0.0	W/26476434-26477519	AT5G66280.1  CDS  gene_syn GDP-D-MANNOSE 4,6-DEHYDRATASE 1, GMD1, K1L20.6, K1L20_6  gene GMD1  function GDP-D-mannose 4,6-dehydratase  go_component intracellular|GO:0005622||IEA  go_process metabolic process|GO:0008152||IEA  go_process GDP-mannose metabolic process|GO:0019673||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function GDP-mannose 4,6-dehydratase activity|GO:0008446||IEA  go_function coenzyme binding|GO:0050662||IEA  go_process nucleotide-sugar metabolic process|GO:0009225||ISS  go_function GDP-mannose 4,6-dehydratase activity|GO:0008446||ISS  product GMD1 (GDP-D-MANNOSE 4,6-DEHYDRATASE 1); GDP-mannose 4,6-dehydratase/ binding / catalytic/ coenzyme binding  note GDP-D-MANNOSE 4,6-DEHYDRATASE 1 (GMD1); FUNCTIONS IN: coenzyme binding, GDP-mannose 4,6-dehydratase activity, binding, catalytic activity; INVOLVED IN: cellular metabolic process, GDP-mannose metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: intracellular; EXPRESSED IN: inflorescence meristem, flower, root; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040), GDP-mannose 4,6-dehydratase (InterPro:IPR006368); BEST Arabidopsis thaliana protein match is: MUR1 (MURUS 1); GDP-mannose 4,6-dehydratase (TAIR:AT3G51160.1); Has 17909 Blast hits to 17905 proteins in 1541 species: Archae - 371; Bacteria - 8103; Metazoa - 352; Fungi - 106; Plants - 398; Viruses - 24; Other Eukaryotes - 8555 (source: NCBI BLink).  protein_id AT5G66280.1p  transcript_id AT5G66280.1  protein_id AT5G66280.1p  transcript_id AT5G66280.1  
At5g66290	chr5:026479406	0.0	C/26479406-26479441,26479226-26479312,26479049-26479133,26478693-26478781,26478207-26478318,26477917-26478116	AT5G66290.1  CDS  gene_syn K1L20.7, K1L20_7  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; Has 18 Blast hits to 18 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G66290.1p  transcript_id AT5G66290.1  protein_id AT5G66290.1p  transcript_id AT5G66290.1  
At5g66300	chr5:026481073	0.0	C/26481073-26481247,26480506-26480780,26480005-26480433	AT5G66300.1  CDS  gene_syn ANAC105, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 105, K1L20.8, K1L20_8, NAC DOMAIN CONTAINING PROTEIN 105, NAC105, VASCULAR-RELATED NAC-DOMAIN 3, VND3  gene NAC105  function Encodes a NAC-domain transcription factor. Expressed in the vascular tissue.  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product NAC105 (NAC DOMAIN CONTAINING PROTEIN 105); transcription factor  note NAC DOMAIN CONTAINING PROTEIN 105 (NAC105); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC076 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 76); transcription factor (TAIR:AT4G36160.1); Has 1564 Blast hits to 1562 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1564; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G66300.1p  transcript_id AT5G66300.1  protein_id AT5G66300.1p  transcript_id AT5G66300.1  
At5g66310	chr5:026490097	0.0	C/26490097-26490304,26489916-26490005,26489736-26489836,26489541-26489654,26489381-26489462,26489241-26489308,26489082-26489147,26488874-26488998,26488227-26488563,26487895-26488029,26486597-26487814,26486207-26486523,26485786-26486116	AT5G66310.1  CDS  gene_syn K1L20.9, K1L20_9  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product kinesin motor family protein  note kinesin motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin motor family protein (TAIR:AT3G51150.1); Has 9310 Blast hits to 8556 proteins in 316 species: Archae - 8; Bacteria - 142; Metazoa - 4526; Fungi - 1066; Plants - 974; Viruses - 18; Other Eukaryotes - 2576 (source: NCBI BLink).  protein_id AT5G66310.1p  transcript_id AT5G66310.1  protein_id AT5G66310.1p  transcript_id AT5G66310.1  
At5g66320	chr5:026496992	0.0	C/26496992-26497309,26496208-26496909	AT5G66320.1  CDS  gene_syn K1L20.10, K1L20_10  function Encodes GATA transcription factor gene GNC, involved in regulating carbon and nitrogen metabolism. Expression occurs in aerial tissue at an early stage of development and is inducible by nitrate.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product zinc finger (GATA type) family protein  note zinc finger (GATA type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: zinc finger (GATA type) family protein (TAIR:AT3G51080.1); Has 1008 Blast hits to 987 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 426; Plants - 419; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT5G66320.1p  transcript_id AT5G66320.1  protein_id AT5G66320.1p  transcript_id AT5G66320.1  
At5g66320	chr5:026496992	0.0	C/26496992-26497309,26496208-26496909	AT5G66320.2  CDS  gene_syn K1L20.10, K1L20_10  function Encodes GATA transcription factor gene GNC, involved in regulating carbon and nitrogen metabolism. Expression occurs in aerial tissue at an early stage of development and is inducible by nitrate.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product zinc finger (GATA type) family protein  note zinc finger (GATA type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: zinc finger (GATA type) family protein (TAIR:AT3G51080.1); Has 1008 Blast hits to 987 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 426; Plants - 419; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT5G66320.2p  transcript_id AT5G66320.2  protein_id AT5G66320.2p  transcript_id AT5G66320.2  
At5g66330	chr5:026500531	0.0	C/26500531-26501787	AT5G66330.1  CDS  gene_syn K1L20.11, K1L20_11  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT2G15320.1); Has 47923 Blast hits to 18016 proteins in 740 species: Archae - 18; Bacteria - 2655; Metazoa - 14796; Fungi - 411; Plants - 27131; Viruses - 0; Other Eukaryotes - 2912 (source: NCBI BLink).  protein_id AT5G66330.1p  transcript_id AT5G66330.1  protein_id AT5G66330.1p  transcript_id AT5G66330.1  
At5g66340	chr5:026502502	0.0	W/26502502-26502525,26502765-26502898,26503042-26503153	AT5G66340.1  CDS  gene_syn K1L20.12, K1L20_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G66340.1p  transcript_id AT5G66340.1  protein_id AT5G66340.1p  transcript_id AT5G66340.1  
At5g66350	chr5:026505522	0.0	C/26505522-26506143,26504714-26505087	AT5G66350.1  CDS  gene_syn K1L20.13, K1L20_13, SHI, SHORT INTERNODES  gene SHI  function A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Shi mutant is dominant, has dwarf phenotype. Loss of function mutations have no observable phenotype. Putative zinc finger protein. Involved in the response to gibberellic acid.  go_component nucleus|GO:0005634|10368174|TAS  go_process response to gibberellin stimulus|GO:0009739|10368174|IMP  go_process gibberellic acid mediated signaling|GO:0009740|10368174|TAS  go_function transcription factor activity|GO:0003700|10368174|TAS  go_function protein binding|GO:0005515|10368174|ISS  go_function protein heterodimerization activity|GO:0046982|16740146|IPI  product SHI (SHORT INTERNODES); protein binding / protein heterodimerization/ transcription factor  note SHORT INTERNODES (SHI); FUNCTIONS IN: protein binding, transcription factor activity, protein heterodimerization activity; INVOLVED IN: response to gibberellin stimulus, gibberellic acid mediated signaling; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, 0 germination, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: STY1 (STYLISH 1); protein heterodimerization/ transcription factor (TAIR:AT3G51060.1); Has 91 Blast hits to 91 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 82; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G66350.1p  transcript_id AT5G66350.1  protein_id AT5G66350.1p  transcript_id AT5G66350.1  
At5g66360	chr5:026510329	0.0	W/26510329-26510751,26510992-26511206,26511291-26511711	AT5G66360.1  CDS  gene_syn K1L20.14, K1L20_14  go_process rRNA modification|GO:0000154||IEA  go_function rRNA (adenine-N6,N6-)-dimethyltransferase activity|GO:0000179||IEA  go_function rRNA methyltransferase activity|GO:0008649||IEA  go_component cellular_component|GO:0005575||ND  go_process rRNA modification|GO:0000154||ISS  go_function rRNA (adenine-N6,N6-)-dimethyltransferase activity|GO:0000179||ISS  go_function rRNA methyltransferase activity|GO:0008649||ISS  product ribosomal RNA adenine dimethylase family protein  note ribosomal RNA adenine dimethylase family protein; FUNCTIONS IN: rRNA methyltransferase activity, rRNA (adenine-N6,N6-)-dimethyltransferase activity; INVOLVED IN: rRNA modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal RNA adenine methylase transferase (InterPro:IPR001737); BEST Arabidopsis thaliana protein match is: dimethyladenosine transferase, putative (TAIR:AT2G47420.1); Has 6834 Blast hits to 6831 proteins in 1772 species: Archae - 188; Bacteria - 3782; Metazoa - 238; Fungi - 139; Plants - 61; Viruses - 0; Other Eukaryotes - 2426 (source: NCBI BLink).  protein_id AT5G66360.1p  transcript_id AT5G66360.1  protein_id AT5G66360.1p  transcript_id AT5G66360.1  
At5g66360	chr5:026510329	0.0	W/26510329-26510751,26510992-26511711	AT5G66360.2  CDS  gene_syn K1L20.14, K1L20_14  go_process rRNA modification|GO:0000154||IEA  go_process rRNA processing|GO:0006364||IEA  go_function rRNA (adenine-N6,N6-)-dimethyltransferase activity|GO:0000179||IEA  go_function rRNA methyltransferase activity|GO:0008649||IEA  go_function rRNA (adenine) methyltransferase activity|GO:0016433||IEA  go_component cellular_component|GO:0005575||ND  go_process rRNA modification|GO:0000154||ISS  go_function rRNA (adenine-N6,N6-)-dimethyltransferase activity|GO:0000179||ISS  go_function rRNA methyltransferase activity|GO:0008649||ISS  product ribosomal RNA adenine dimethylase family protein  note ribosomal RNA adenine dimethylase family protein; FUNCTIONS IN: rRNA methyltransferase activity, rRNA (adenine-N6,N6-)-dimethyltransferase activity, rRNA (adenine) methyltransferase activity; INVOLVED IN: rRNA modification, rRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: rRNA adenine dimethylase (InterPro:IPR011530), Ribosomal RNA adenine methylase transferase (InterPro:IPR001737); BEST Arabidopsis thaliana protein match is: dimethyladenosine transferase, putative (TAIR:AT2G47420.1); Has 7209 Blast hits to 7202 proteins in 1778 species: Archae - 188; Bacteria - 3804; Metazoa - 242; Fungi - 139; Plants - 64; Viruses - 0; Other Eukaryotes - 2772 (source: NCBI BLink).  protein_id AT5G66360.2p  transcript_id AT5G66360.2  protein_id AT5G66360.2p  transcript_id AT5G66360.2  
At5g66370	chr5:026512792	0.0	C/26512792-26512824,26512618-26512693,26512200-26512543	AT5G66370.1  CDS  gene_syn K1F13.2, K1F13_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51020.1); Has 38 Blast hits to 38 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 20; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT5G66370.1p  transcript_id AT5G66370.1  protein_id AT5G66370.1p  transcript_id AT5G66370.1  
At5g66380	chr5:026515428	0.0	C/26515428-26515533,26515279-26515355,26515114-26515190,26514879-26514975,26514706-26514799,26514550-26514623,26514300-26514404,26514072-26514164,26513870-26513937,26513645-26513780	AT5G66380.1  CDS  gene_syn ARABIDOPSIS THALIANA FOLATE TRANSPORTER 1, ATFOLT1, K1F13.3, K1F13_3  gene ATFOLT1  function Encodes a folate transporter that is located in the chloroplast envelope and is able to mediate exogenous folate uptake when expressed in E. coli. However, this is not the sole folate transporter for chloroplasts as null mutants of this gene have no discernible phenotype when grown under folate-sufficient conditions and contained wild-type levels of folates in leaves.  go_component mitochondrion|GO:0005739|16055441|IDA  go_component chloroplast|GO:0009507|16055441|IDA  go_component chloroplast envelope|GO:0009941|16055441|IDA  go_process transport|GO:0006810||ISS  go_process folic acid transport|GO:0015884|16055441|IGI  go_function binding|GO:0005488||ISS  go_function folic acid transporter activity|GO:0008517|16055441|IGI  product ATFOLT1 (ARABIDOPSIS THALIANA FOLATE TRANSPORTER 1); binding / folic acid transporter  note ARABIDOPSIS THALIANA FOLATE TRANSPORTER 1 (ATFOLT1); FUNCTIONS IN: folic acid transporter activity, binding; INVOLVED IN: transport, folic acid transport; LOCATED IN: mitochondrion, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: mitochondrial substrate carrier family protein (TAIR:AT1G25380.1); Has 18170 Blast hits to 9875 proteins in 359 species: Archae - 0; Bacteria - 0; Metazoa - 9061; Fungi - 4968; Plants - 2546; Viruses - 5; Other Eukaryotes - 1590 (source: NCBI BLink).  protein_id AT5G66380.1p  transcript_id AT5G66380.1  protein_id AT5G66380.1p  transcript_id AT5G66380.1  
At5g66390	chr5:026517096	0.0	C/26517096-26517329,26516807-26516998,26516567-26516732,26516063-26516481	AT5G66390.1  CDS  gene_syn K1F13.4, K1F13_4  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase 72 (PER72) (P72) (PRXR8)  note peroxidase 72 (PER72) (P72) (PRXR8); FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, hypocotyl, flower, root; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT4G36430.1); Has 2940 Blast hits to 2923 proteins in 224 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 117; Plants - 2778; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT5G66390.1p  transcript_id AT5G66390.1  protein_id AT5G66390.1p  transcript_id AT5G66390.1  
At5g66400	chr5:026518803	0.0	C/26518803-26519153,26518511-26518717	AT5G66400.2  CDS  gene_syn ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, ATDI8, K1F13.5, K1F13_5, RAB18, RESPONSIVE TO ABA 18  gene RAB18  function Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. ABA- and drought-induced glycine-rice dehydrin protein. The ABA-induced expression of RAB18 was reduced following ACC application, indicating that ethylene inhibits the ABA signaling pathway. RAB18 is also expressed in response to the formation of the phospholipid diacylglycerol pyrophosphate. COR47 and RAB18 double overexpressor plants are cold tolerant. Expressed in guard cells.  go_component cellular_component|GO:0005575||ND  go_process response to stress|GO:0006950|7948863|IEP  go_process response to water deprivation|GO:0009414|7823904|IEP  go_process cold acclimation|GO:0009631|15356392|IGI  go_process response to abscisic acid stimulus|GO:0009737|1463831|IEP  go_process response to 1-Aminocyclopropane-1-carboxylic Acid|GO:0009961|16024687|IEP  go_function molecular_function|GO:0003674||ND  product RAB18 (RESPONSIVE TO ABA 18)  note RESPONSIVE TO ABA 18 (RAB18); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cold acclimation, response to 1-Aminocyclopropane-1-carboxylic Acid, response to water deprivation, response to abscisic acid stimulus, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); Has 50699 Blast hits to 19024 proteins in 1300 species: Archae - 44; Bacteria - 15736; Metazoa - 16335; Fungi - 3034; Plants - 6644; Viruses - 531; Other Eukaryotes - 8375 (source: NCBI BLink).  protein_id AT5G66400.2p  transcript_id AT5G66400.2  protein_id AT5G66400.2p  transcript_id AT5G66400.2  
At5g66400	chr5:026518803	0.0	C/26518803-26519153,26518511-26518720	AT5G66400.1  CDS  gene_syn ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, ATDI8, K1F13.5, K1F13_5, RAB18, RESPONSIVE TO ABA 18  gene RAB18  function Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. ABA- and drought-induced glycine-rice dehydrin protein. The ABA-induced expression of RAB18 was reduced following ACC application, indicating that ethylene inhibits the ABA signaling pathway. RAB18 is also expressed in response to the formation of the phospholipid diacylglycerol pyrophosphate. COR47 and RAB18 double overexpressor plants are cold tolerant. Expressed in guard cells.  go_component cellular_component|GO:0005575||ND  go_process response to stress|GO:0006950|7948863|IEP  go_process response to water deprivation|GO:0009414|7823904|IEP  go_process cold acclimation|GO:0009631|15356392|IGI  go_process response to abscisic acid stimulus|GO:0009737|1463831|IEP  go_process response to 1-Aminocyclopropane-1-carboxylic Acid|GO:0009961|16024687|IEP  go_function molecular_function|GO:0003674||ND  product RAB18 (RESPONSIVE TO ABA 18)  note RESPONSIVE TO ABA 18 (RAB18); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cold acclimation, response to 1-Aminocyclopropane-1-carboxylic Acid, response to water deprivation, response to abscisic acid stimulus, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); Has 49883 Blast hits to 18155 proteins in 1224 species: Archae - 38; Bacteria - 15309; Metazoa - 16363; Fungi - 3076; Plants - 6521; Viruses - 510; Other Eukaryotes - 8066 (source: NCBI BLink).  protein_id AT5G66400.1p  transcript_id AT5G66400.1  protein_id AT5G66400.1p  transcript_id AT5G66400.1  
At5g66410	chr5:026519909	0.0	W/26519909-26519992,26520297-26520371,26520480-26520527,26520630-26520772,26520861-26520933,26521012-26521073,26521172-26521269,26521350-26521459	AT5G66410.1  CDS  gene_syn K1F13.6, K1F13_6, PLP3b, Phosducin-like protein 3 homolog  gene PLP3b  function Encodes a protein that functions in microtubule assembly. Plants with reduced levels of both PLP3a (At3g50960) and PLP3b show defects in cytokinesis, cortical microtubule array formation, oriented cell growth, and maintenance of proper ploidy.  go_component cellular_component|GO:0005575||ND  go_process nuclear division|GO:0000280|18390592|IGI  go_process cytokinesis|GO:0000910|18390592|IGI  go_process nucleolus organization|GO:0007000|18390592|IGI  go_process cortical microtubule organization|GO:0043622|18390592|IGI  go_process anisotropic cell growth|GO:0051211|18390592|IGI  go_function beta-tubulin binding|GO:0048487|18390592|ISS  product PLP3b (Phosducin-like protein 3 homolog); beta-tubulin binding  note Phosducin-like protein 3 homolog (PLP3b); FUNCTIONS IN: beta-tubulin binding; INVOLVED IN: cortical microtubule organization, nucleolus organization, nuclear division, anisotropic cell growth, cytokinesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: PLP3a (Phosducin-like protein 3 homolog); beta-tubulin binding (TAIR:AT3G50960.1); Has 702 Blast hits to 698 proteins in 164 species: Archae - 6; Bacteria - 33; Metazoa - 338; Fungi - 105; Plants - 84; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).  protein_id AT5G66410.1p  transcript_id AT5G66410.1  protein_id AT5G66410.1p  transcript_id AT5G66410.1  
At5g66420	chr5:026524043	0.0	C/26524043-26524537,26523717-26523923,26523419-26523634,26523129-26523342,26522763-26523010,26522460-26522638,26522122-26522375,26521893-26522047	AT5G66420.1  CDS  gene_syn K1F13.7, K1F13_7  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP033271 (InterPro:IPR008322), TIM-barrel signal transduction protein, predicted (InterPro:IPR009215); Has 809 Blast hits to 807 proteins in 200 species: Archae - 4; Bacteria - 603; Metazoa - 0; Fungi - 61; Plants - 24; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT5G66420.1p  transcript_id AT5G66420.1  protein_id AT5G66420.1p  transcript_id AT5G66420.1  
At5g66420	chr5:026524861	0.0	C/26524861-26524986,26524043-26524708,26523717-26523923,26523419-26523634,26523129-26523342,26522763-26523010,26522460-26522638,26522122-26522375,26521893-26522047	AT5G66420.2  CDS  gene_syn K1F13.7, K1F13_7  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP033271 (InterPro:IPR008322), TIM-barrel signal transduction protein, predicted (InterPro:IPR009215); Has 820 Blast hits to 818 proteins in 200 species: Archae - 4; Bacteria - 603; Metazoa - 0; Fungi - 61; Plants - 24; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).  protein_id AT5G66420.2p  transcript_id AT5G66420.2  protein_id AT5G66420.2p  transcript_id AT5G66420.2  
At5g66430	chr5:026526749	0.0	C/26526749-26526799,26526240-26526632,26525888-26526145,26525410-26525772	AT5G66430.1  CDS  gene_syn K1F13.8, K1F13_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product S-adenosyl-L-methionine:carboxyl methyltransferase family protein  note S-adenosyl-L-methionine:carboxyl methyltransferase family protein; FUNCTIONS IN: S-adenosyl-Lmethionine:benzoic acid acid carboxyl methyl transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: NAMT1; S-adenosylmethionine-dependent methyltransferase (TAIR:AT5G04370.2); Has 624 Blast hits to 615 proteins in 100 species: Archae - 0; Bacteria - 52; Metazoa - 12; Fungi - 3; Plants - 451; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).  protein_id AT5G66430.1p  transcript_id AT5G66430.1  protein_id AT5G66430.1p  transcript_id AT5G66430.1  
At5g66440	chr5:026530274	0.0	C/26530274-26531032	AT5G66440.1  CDS  gene_syn K1F13.9, K1F13_9  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34560.1); Has 47 Blast hits to 46 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G66440.1p  transcript_id AT5G66440.1  protein_id AT5G66440.1p  transcript_id AT5G66440.1  
At5g66450	chr5:026534801	0.0	W/26534801-26535133,26535245-26535470,26535558-26535631,26535724-26535951	AT5G66450.1  CDS  gene_syn K1F13.10, K1F13_10  go_component membrane|GO:0016020||IEA  go_function catalytic activity|GO:0003824||IEA  go_process biological_process|GO:0008150||ND  product phosphatidic acid phosphatase-related / PAP2-related  note phosphatidic acid phosphatase-related / PAP2-related; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: phosphatidic acid phosphatase-related / PAP2-related (TAIR:AT3G50920.1); Has 208 Blast hits to 208 proteins in 96 species: Archae - 0; Bacteria - 6; Metazoa - 67; Fungi - 59; Plants - 45; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT5G66450.1p  transcript_id AT5G66450.1  protein_id AT5G66450.1p  transcript_id AT5G66450.1  
At5g66450	chr5:026534978	0.0	W/26534978-26535133,26535245-26535470,26535558-26535631,26535724-26535951	AT5G66450.2  CDS  gene_syn K1F13.10, K1F13_10  go_component membrane|GO:0016020||IEA  go_function catalytic activity|GO:0003824||IEA  go_process biological_process|GO:0008150||ND  product phosphatidic acid phosphatase-related / PAP2-related  note phosphatidic acid phosphatase-related / PAP2-related; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: phosphatidic acid phosphatase-related / PAP2-related (TAIR:AT3G50920.2); Has 208 Blast hits to 208 proteins in 96 species: Archae - 0; Bacteria - 6; Metazoa - 67; Fungi - 59; Plants - 45; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT5G66450.2p  transcript_id AT5G66450.2  protein_id AT5G66450.2p  transcript_id AT5G66450.2  
At5g66455	chr5:026535985	0.0	C/26535985-26538011	AT5G66455.2  pseudogenic_transcript  pseudo  function pseudogene of pentatricopeptide (PPR) repeat-containing protein  
At5g66455	chr5:026535985	0.0	C/26535985-26538011	AT5G66455.2  pseudogenic_transcript  pseudo  function pseudogene of pentatricopeptide (PPR) repeat-containing protein  
At5g66460	chr5:026540508	0.0	C/26540508-26540837,26539971-26540165,26539760-26539882,26539446-26539648,26538911-26539355	AT5G66460.1  CDS  gene_syn K1F13.12, K1F13_12  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product (1-4)-beta-mannan endohydrolase, putative  note (1-4)-beta-mannan endohydrolase, putative; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, family 5, conserved site (InterPro:IPR018087), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: (1-4)-beta-mannan endohydrolase, putative (TAIR:AT3G10890.1); Has 448 Blast hits to 440 proteins in 113 species: Archae - 2; Bacteria - 115; Metazoa - 0; Fungi - 120; Plants - 188; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT5G66460.1p  transcript_id AT5G66460.1  protein_id AT5G66460.1p  transcript_id AT5G66460.1  
At5g66470	chr5:026543915	0.0	C/26543915-26544302,26543670-26543815,26543420-26543560,26543227-26543340,26542923-26543048,26542674-26542772,26542489-26542590,26542168-26542248,26541986-26542072	AT5G66470.1  CDS  gene_syn K1F13.13, K1F13_13  go_component chloroplast|GO:0009507|18431481|IDA  go_function RNA binding|GO:0003723||IEA  go_function GTP binding|GO:0005525||IEA  product GTP binding / RNA binding  note GTP binding / RNA binding; FUNCTIONS IN: RNA binding, GTP binding; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 2 (InterPro:IPR004044), K Homology, prokaryotic type (InterPro:IPR009019), Small GTP-binding protein (InterPro:IPR005225), GTP1/OBG (InterPro:IPR006073), GTP-binding protein Era (InterPro:IPR005662), GTP-binding protein, HSR1-related (InterPro:IPR002917), K homology-like, alpha/beta (InterPro:IPR015946); BEST Arabidopsis thaliana protein match is: GTP-binding protein (ERG) (TAIR:AT1G30960.1); Has 20367 Blast hits to 17662 proteins in 1697 species: Archae - 258; Bacteria - 13542; Metazoa - 351; Fungi - 156; Plants - 171; Viruses - 0; Other Eukaryotes - 5889 (source: NCBI BLink).  protein_id AT5G66470.1p  transcript_id AT5G66470.1  protein_id AT5G66470.1p  transcript_id AT5G66470.1  
At5g66480	chr5:026545735	0.0	C/26545735-26546476,26544990-26545412,26544737-26544906	AT5G66480.1  CDS  gene_syn K1F13.14, K1F13_14  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50910.1); Has 27 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 2; Plants - 19; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G66480.1p  transcript_id AT5G66480.1  protein_id AT5G66480.1p  transcript_id AT5G66480.1  
At5g66490	chr5:026547423	0.0	C/26547423-26547752	AT5G66490.1  CDS  gene_syn K1F13.15, K1F13_15  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50900.1); Has 21 Blast hits to 21 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G66490.1p  transcript_id AT5G66490.1  protein_id AT5G66490.1p  transcript_id AT5G66490.1  
At5g66500	chr5:026548076	0.0	C/26548076-26549674	AT5G66500.1  CDS  gene_syn K1F13.16, K1F13_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, cauline leaf, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G13600.1); Has 10819 Blast hits to 4139 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 15; Plants - 10655; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).  protein_id AT5G66500.1p  transcript_id AT5G66500.1  protein_id AT5G66500.1p  transcript_id AT5G66500.1  
At5g66510	chr5:026551382	0.0	C/26551382-26551496,26550820-26550963,26550587-26550712,26550347-26550498,26550016-26550255	AT5G66510.1  CDS  gene_syn GAMMA CA3, GAMMA CARBONIC ANHYDRASE 3, K1F13.17, K1F13_17  gene GAMMA CA3  function Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|12837548|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial membrane|GO:0031966|16407270|IDA  go_component respiratory chain complex I|GO:0045271|16407270|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process photorespiration|GO:0009853|16407270|TAS  go_function carbonate dehydratase activity|GO:0004089|16407270|ISS  product GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3); carbonate dehydratase  note GAMMA CARBONIC ANHYDRASE 3 (GAMMA CA3); FUNCTIONS IN: carbonate dehydratase activity; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, respiratory chain complex I; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), Bacterial transferase hexapeptide repeat (InterPro:IPR001451); BEST Arabidopsis thaliana protein match is: GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1); carbonate dehydratase (TAIR:AT1G19580.1); Has 6415 Blast hits to 6381 proteins in 1168 species: Archae - 169; Bacteria - 3713; Metazoa - 32; Fungi - 59; Plants - 121; Viruses - 0; Other Eukaryotes - 2321 (source: NCBI BLink).  protein_id AT5G66510.1p  transcript_id AT5G66510.1  protein_id AT5G66510.1p  transcript_id AT5G66510.1  
At5g66510	chr5:026551382	0.0	C/26551382-26551496,26550820-26550963,26550587-26550745,26550347-26550498,26550016-26550255	AT5G66510.2  CDS  gene_syn GAMMA CA3, GAMMA CARBONIC ANHYDRASE 3, K1F13.17, K1F13_17  gene GAMMA CA3  function Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|12837548|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial membrane|GO:0031966|16407270|IDA  go_component respiratory chain complex I|GO:0045271|16407270|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process photorespiration|GO:0009853|16407270|TAS  go_function carbonate dehydratase activity|GO:0004089|16407270|ISS  product GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3); carbonate dehydratase  note GAMMA CARBONIC ANHYDRASE 3 (GAMMA CA3); FUNCTIONS IN: carbonate dehydratase activity; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), Bacterial transferase hexapeptide repeat (InterPro:IPR001451); BEST Arabidopsis thaliana protein match is: GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1); carbonate dehydratase (TAIR:AT1G19580.1); Has 6768 Blast hits to 6742 proteins in 1163 species: Archae - 157; Bacteria - 3949; Metazoa - 4; Fungi - 56; Plants - 123; Viruses - 0; Other Eukaryotes - 2479 (source: NCBI BLink).  protein_id AT5G66510.2p  transcript_id AT5G66510.2  protein_id AT5G66510.2p  transcript_id AT5G66510.2  
At5g66520	chr5:026551879	0.0	W/26551879-26553741	AT5G66520.1  CDS  gene_syn K1F13.18, K1F13_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G06540.1); Has 14737 Blast hits to 5344 proteins in 184 species: Archae - 1; Bacteria - 4; Metazoa - 109; Fungi - 73; Plants - 14158; Viruses - 0; Other Eukaryotes - 392 (source: NCBI BLink).  protein_id AT5G66520.1p  transcript_id AT5G66520.1  protein_id AT5G66520.1p  transcript_id AT5G66520.1  
At5g66530	chr5:026555508	0.0	C/26555508-26555575,26555304-26555402,26555107-26555220,26554958-26555009,26554729-26554866,26554555-26554653,26554353-26554450,26554148-26554255,26553976-26554057,26553821-26553886	AT5G66530.1  CDS  gene_syn K1F13.19, K1F13_19  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function isomerase activity|GO:0016853||IEA  go_function carbohydrate binding|GO:0030246||IEA  go_process galactose metabolic process|GO:0006012||ISS  go_function aldose 1-epimerase activity|GO:0004034||ISS  product aldose 1-epimerase family protein  note aldose 1-epimerase family protein; FUNCTIONS IN: carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity; INVOLVED IN: galactose metabolic process, carbohydrate metabolic process; LOCATED IN: apoplast, chloroplast, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Aldose 1-epimerase (InterPro:IPR008183), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718); BEST Arabidopsis thaliana protein match is: aldose 1-epimerase family protein (TAIR:AT5G57330.1); Has 1296 Blast hits to 1295 proteins in 534 species: Archae - 0; Bacteria - 866; Metazoa - 40; Fungi - 84; Plants - 134; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink).  protein_id AT5G66530.1p  transcript_id AT5G66530.1  protein_id AT5G66530.1p  transcript_id AT5G66530.1  
At5g66535	chr5:026556023	0.0	C/26556023-26556096	AT5G66535.1  tRNA  gene_syn 67932.TRNA-ASN-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asn (anticodon: GTT)  transcript_id AT5G66535.1  
At5g66540	chr5:026558633	0.0	C/26558633-26559310,26558480-26558535,26558272-26558359,26558078-26558188,26557848-26557985,26557696-26557764,26557563-26557604,26557400-26557468,26557214-26557285,26557068-26557118,26556830-26556971,26556653-26556711	AT5G66540.1  CDS  gene_syn K1F13.21, K1F13_21  go_component nucleolus|GO:0005730|15496452|IDA  go_process rRNA processing|GO:0006364||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: cytosol, nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p (InterPro:IPR012173), Mpp10 protein (InterPro:IPR007151); Has 76240 Blast hits to 38667 proteins in 1479 species: Archae - 252; Bacteria - 6537; Metazoa - 31185; Fungi - 9935; Plants - 3937; Viruses - 750; Other Eukaryotes - 23644 (source: NCBI BLink).  protein_id AT5G66540.1p  transcript_id AT5G66540.1  protein_id AT5G66540.1p  transcript_id AT5G66540.1  
At5g66550	chr5:026561130	0.0	C/26561130-26561162,26560957-26561028,26560796-26560870,26560632-26560715,26560476-26560545,26560282-26560373,26560151-26560192,26559975-26560055,26559752-26559826	AT5G66550.1  CDS  gene_syn K1F13.22, K1F13_22  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Maf family protein  note Maf family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Maf-like protein (InterPro:IPR003697); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42770.1); Has 4423 Blast hits to 4423 proteins in 1170 species: Archae - 26; Bacteria - 2701; Metazoa - 81; Fungi - 57; Plants - 63; Viruses - 0; Other Eukaryotes - 1495 (source: NCBI BLink).  protein_id AT5G66550.1p  transcript_id AT5G66550.1  protein_id AT5G66550.1p  transcript_id AT5G66550.1  
At5g66558	chr5:026563964	0.0	C/26563964-26566774	AT5G66558.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT5G66560  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G66558.1  
At5g66560	chr5:026564368	0.0	W/26564368-26564405,26564511-26564580,26564682-26566010,26566093-26566662	AT5G66560.1  CDS  gene_syn K1F13.23, K1F13_23  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to light stimulus|GO:0009416||IEA  go_function signal transducer activity|GO:0004871||IEA  go_function protein binding|GO:0005515||IEA  go_process response to light stimulus|GO:0009416||ISS  go_function signal transducer activity|GO:0004871||ISS  product phototropic-responsive NPH3 family protein  note phototropic-responsive NPH3 family protein; FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: phototropic-responsive NPH3 family protein (TAIR:AT3G50840.1); Has 450 Blast hits to 432 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 6; Plants - 439; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G66560.1p  transcript_id AT5G66560.1  protein_id AT5G66560.1p  transcript_id AT5G66560.1  
At5g66562	chr5:026567370	0.0	W/26567370-26567453	AT5G66562.1  snoRNA  gene_syn 67932.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT5G66562.1  
At5g66564	chr5:026567521	0.0	W/26567521-26567604	AT5G66564.1  snoRNA  gene_syn 67932.SNORNA00002  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT5G66564.1  
At5g66567	chr5:026567660	0.0	W/26567660-26567731	AT5G66567.1  snoRNA  gene_syn 67932.SNORNA00003  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT5G66567.1  
At5g66568	chr5:026568397	0.0	W/26568397-26568470	AT5G66568.1  tRNA  gene_syn 67932.TRNA-ILE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ile (anticodon: AAT)  transcript_id AT5G66568.1  
At5g66570	chr5:026568744	0.0	W/26568744-26568986,26569283-26569576,26569663-26570124	AT5G66570.1  CDS  gene_syn 33 KDA OXYGEN EVOLVING POLYPEPTIDE 1, K1F13.25, K1F13_25, MANGANESE-STABILIZING PROTEIN 1, MSP-1, OE33, OEC33, OEE1, OEE33, OXYGEN EVOLVING COMPLEX 33 KILODALTON PROTEIN, OXYGEN EVOLVING COMPLEX SUBUNIT 33 KDA, OXYGEN EVOLVING ENHANCER PROTEIN 33, PS II OXYGEN-EVOLVING COMPLEX 1, PSBO, PSBO-1, PSBO1  gene PSBO1  function Encodes a protein which is an extrinsic subunit of photosystem II and which has been proposed to play a central role in stabilization of the catalytic manganese cluster. In <i>Arabidopsis thaliana</i> the PsbO proteins are encoded by two genes: <i>psbO1</i> and <i>psbO2</i>. PsbO1 is the major isoform in the wild-type.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  go_component chloroplast thylakoid lumen|GO:0009543|8034593|IDA  go_component chloroplast thylakoid lumen|GO:0009543||IDA  go_component thylakoid|GO:0009579|15722336|IEP  go_component oxygen evolving complex|GO:0009654|9802567|ISS  go_component oxygen evolving complex|GO:0009654||ISS  go_component plastoglobule|GO:0010287|16414959|IDA  go_component chloroplast photosystem II|GO:0030095||ISS  go_process photoinhibition|GO:0010205|17217465|IMP  go_process photosystem II assembly|GO:0010207|15722336|IMP  go_process photosynthesis, light reaction|GO:0019684|7948862|IDA  go_process regulation of protein amino acid dephosphorylation|GO:0035304|17217465|IMP  go_process photosystem II stabilization|GO:0042549|15722336|IMP  go_function poly(U) binding|GO:0008266|17511964|IDA  go_function oxygen evolving activity|GO:0010242|7948862|IDA  product PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1); oxygen evolving/ poly(U) binding  note PS II OXYGEN-EVOLVING COMPLEX 1 (PSBO1); FUNCTIONS IN: oxygen evolving activity, poly(U) binding; INVOLVED IN: in 6 processes; LOCATED IN: in 10 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II manganese-stabilizing protein PsbO (InterPro:IPR002628); BEST Arabidopsis thaliana protein match is: PSBO2 (PHOTOSYSTEM II SUBUNIT O-2); oxygen evolving/ poly(U) binding (TAIR:AT3G50820.1); Has 454 Blast hits to 453 proteins in 123 species: Archae - 0; Bacteria - 117; Metazoa - 1; Fungi - 0; Plants - 161; Viruses - 0; Other Eukaryotes - 175 (source: NCBI BLink).  protein_id AT5G66570.1p  transcript_id AT5G66570.1  protein_id AT5G66570.1p  transcript_id AT5G66570.1  
At5g66580	chr5:026572724	0.0	W/26572724-26573194	AT5G66580.1  CDS  gene_syn K1F13.26, K1F13_26  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50800.1); Has 132 Blast hits to 132 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G66580.1p  transcript_id AT5G66580.1  protein_id AT5G66580.1p  transcript_id AT5G66580.1  
At5g66590	chr5:026574255	0.0	W/26574255-26574812	AT5G66590.1  CDS  gene_syn K1F13.27, K1F13_27  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_component extracellular region|GO:0005576||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product allergen V5/Tpx-1-related family protein  note allergen V5/Tpx-1-related family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related (InterPro:IPR001283), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: allergen V5/Tpx-1-related family protein (TAIR:AT5G57625.1); Has 1763 Blast hits to 1704 proteins in 235 species: Archae - 0; Bacteria - 47; Metazoa - 893; Fungi - 192; Plants - 589; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT5G66590.1p  transcript_id AT5G66590.1  protein_id AT5G66590.1p  transcript_id AT5G66590.1  
At5g66600	chr5:026577856	0.0	C/26577856-26577954,26577378-26577449,26577163-26577288,26576261-26577069,26576035-26576134,26575885-26575944,26575711-26575797,26575495-26575620,26575105-26575410	AT5G66600.2  CDS  gene_syn K1F13.28, K1F13_28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23700.1); Has 338 Blast hits to 333 proteins in 56 species: Archae - 0; Bacteria - 36; Metazoa - 33; Fungi - 2; Plants - 247; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT5G66600.2p  transcript_id AT5G66600.2  protein_id AT5G66600.2p  transcript_id AT5G66600.2  
At5g66600	chr5:026578239	0.0	C/26578239-26578315,26577856-26577937,26577378-26577449,26577163-26577288,26576261-26577069,26576035-26576134,26575885-26575944,26575711-26575797,26575495-26575620,26575105-26575410	AT5G66600.1  CDS  gene_syn K1F13.28, K1F13_28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23700.1); Has 343 Blast hits to 338 proteins in 57 species: Archae - 0; Bacteria - 36; Metazoa - 44; Fungi - 2; Plants - 241; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT5G66600.1p  transcript_id AT5G66600.1  protein_id AT5G66600.1p  transcript_id AT5G66600.1  
At5g66600	chr5:026578239	0.0	C/26578239-26578315,26577856-26577937,26577378-26577449,26577163-26577288,26576261-26577069,26576035-26576134,26575885-26575944,26575711-26575797,26575495-26575620,26575105-26575410	AT5G66600.3  CDS  gene_syn K1F13.28, K1F13_28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23700.1); Has 343 Blast hits to 338 proteins in 57 species: Archae - 0; Bacteria - 36; Metazoa - 44; Fungi - 2; Plants - 241; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT5G66600.3p  transcript_id AT5G66600.3  protein_id AT5G66600.3p  transcript_id AT5G66600.3  
At5g66607	chr5:026583431	0.0	C/26583431-26583544	AT5G66607.1  CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT5G66607.1p  transcript_id AT5G66607.1  protein_id AT5G66607.1p  transcript_id AT5G66607.1  
At5g66610	chr5:026585223	0.0	W/26585223-26585273,26585345-26585889,26585982-26586102,26586217-26586294,26586420-26586524,26586638-26586850,26586934-26586996,26587084-26587202,26587287-26587345,26587427-26587755	AT5G66610.1  CDS  gene_syn DA1-RELATED PROTEIN 7, DAR7, K1F13.29, K1F13_29  gene DAR7  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product DAR7 (DA1-RELATED PROTEIN 7); zinc ion binding  note DA1-RELATED PROTEIN 7 (DAR7); FUNCTIONS IN: zinc ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781); BEST Arabidopsis thaliana protein match is: DAR6 (DA1-RELATED PROTEIN 6); zinc ion binding (TAIR:AT5G66620.1); Has 2096 Blast hits to 1475 proteins in 110 species: Archae - 0; Bacteria - 7; Metazoa - 1712; Fungi - 47; Plants - 88; Viruses - 2; Other Eukaryotes - 240 (source: NCBI BLink).  protein_id AT5G66610.1p  transcript_id AT5G66610.1  protein_id AT5G66610.1p  transcript_id AT5G66610.1  
At5g66620	chr5:026588585	0.0	W/26588585-26588625,26589196-26589223,26589386-26590167,26590261-26590393,26590495-26590566,26590641-26590739,26590880-26591092,26591174-26591236,26591324-26591442,26591520-26591578,26591681-26592006	AT5G66620.1  CDS  gene_syn DA1-RELATED PROTEIN 6, DAR6, K1F13.30, K1F13_30  gene DAR6  go_function zinc ion binding|GO:0008270||IEA  product DAR6 (DA1-RELATED PROTEIN 6); zinc ion binding  note DA1-RELATED PROTEIN 6 (DAR6); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781), Ubiquitin interacting motif (InterPro:IPR003903); BEST Arabidopsis thaliana protein match is: DAR5 (DA1-RELATED PROTEIN 5); zinc ion binding (TAIR:AT5G66630.1); Has 10918 Blast hits to 7212 proteins in 531 species: Archae - 30; Bacteria - 694; Metazoa - 4773; Fungi - 577; Plants - 290; Viruses - 128; Other Eukaryotes - 4426 (source: NCBI BLink).  protein_id AT5G66620.1p  transcript_id AT5G66620.1  protein_id AT5G66620.1p  transcript_id AT5G66620.1  
At5g66630	chr5:026592720	0.0	W/26592720-26593365,26593449-26593836,26593930-26594062,26594172-26594243,26594318-26594416,26594569-26594772,26594860-26594922,26595003-26595121,26595210-26595268,26595366-26595691	AT5G66630.1  CDS  gene_syn DA1-RELATED PROTEIN 5, DAR5, K1F13.31, K1F13_31  gene DAR5  go_function zinc ion binding|GO:0008270||IEA  product DAR5 (DA1-RELATED PROTEIN 5); zinc ion binding  note DA1-RELATED PROTEIN 5 (DAR5); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781), Disease resistance, plant (InterPro:IPR014011), Mildew-resistance, broad-spectrum (InterPro:IPR008808); BEST Arabidopsis thaliana protein match is: DAR6 (DA1-RELATED PROTEIN 6); zinc ion binding (TAIR:AT5G66620.1); Has 1346 Blast hits to 1340 proteins in 133 species: Archae - 0; Bacteria - 16; Metazoa - 131; Fungi - 7; Plants - 1154; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT5G66630.1p  transcript_id AT5G66630.1  protein_id AT5G66630.1p  transcript_id AT5G66630.1  
At5g66631	chr5:026596207	0.0	W/26596207-26598192	AT5G66631.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G16010.1); Has 7784 Blast hits to 2776 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 51; Plants - 7639; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT5G66631.1p  transcript_id AT5G66631.1  protein_id AT5G66631.1p  transcript_id AT5G66631.1  
At5g66640	chr5:026599818	0.0	W/26599818-26600053,26600151-26600244,26600314-26600394,26600497-26600616,26600696-26600908,26600987-26601049,26601139-26601316,26601398-26601765	AT5G66640.1  CDS  gene_syn DA1-RELATED PROTEIN 3, DAR3, MSN2.2, MSN2_2  gene DAR3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DAR3 (DA1-RELATED PROTEIN 3)  note DA1-RELATED PROTEIN 3 (DAR3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: DAR4 (DA1-RELATED PROTEIN 4); ATP binding / protein binding / zinc ion binding (TAIR:AT5G17890.1); Has 140 Blast hits to 138 proteins in 28 species: Archae - 0; Bacteria - 6; Metazoa - 8; Fungi - 6; Plants - 87; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT5G66640.1p  transcript_id AT5G66640.1  protein_id AT5G66640.1p  transcript_id AT5G66640.1  
At5g66650	chr5:026603727	0.0	C/26603727-26604257,26603204-26603638	AT5G66650.1  CDS  gene_syn MSN2.3, MSN2_3  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF607 (InterPro:IPR006769); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23790.1); Has 272 Blast hits to 270 proteins in 89 species: Archae - 2; Bacteria - 0; Metazoa - 132; Fungi - 36; Plants - 70; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT5G66650.1p  transcript_id AT5G66650.1  protein_id AT5G66650.1p  transcript_id AT5G66650.1  
At5g66658	chr5:026608329	0.0	W/26608329-26608553	AT5G66658.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G66658.1p  transcript_id AT5G66658.1  protein_id AT5G66658.1p  transcript_id AT5G66658.1  
At5g66660	chr5:026609308	0.0	C/26609308-26610504	AT5G66660.1  CDS  gene_syn MSN2.4, MSN2_4  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: inflorescence meristem; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66670.2); Has 100 Blast hits to 100 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G66660.1p  transcript_id AT5G66660.1  protein_id AT5G66660.1p  transcript_id AT5G66660.1  
At5g66670	chr5:026611474	0.0	C/26611474-26612700	AT5G66670.1  CDS  gene_syn MSN2.5, MSN2_5  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: inflorescence meristem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66660.1); Has 108 Blast hits to 108 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G66670.1p  transcript_id AT5G66670.1  protein_id AT5G66670.1p  transcript_id AT5G66670.1  
At5g66670	chr5:026611474	0.0	C/26611474-26612700	AT5G66670.2  CDS  gene_syn MSN2.5, MSN2_5  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: inflorescence meristem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66660.1); Has 108 Blast hits to 108 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G66670.2p  transcript_id AT5G66670.2  protein_id AT5G66670.2p  transcript_id AT5G66670.2  
At5g66675	chr5:026615355	0.0	C/26615355-26616571,26615252-26615273	AT5G66675.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G18630.1); Has 135 Blast hits to 135 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G66675.1p  transcript_id AT5G66675.1  protein_id AT5G66675.1p  transcript_id AT5G66675.1  
At5g66680	chr5:026620308	0.0	C/26620308-26620581,26620081-26620217,26619869-26619994,26619660-26619713,26619411-26619524,26619189-26619244,26619063-26619104,26618845-26618920,26618607-26618678,26618383-26618508,26618162-26618266,26617998-26618081,26617840-26617887	AT5G66680.1  CDS  gene_syn DGL1, MSN2.7, MSN2_7  gene DGL1  function Encodes a protein ortholog of human SOT48 or yeast WBP1, an essential protein subunit of the oligosaccharyltransferase (OST) complex, which is responsible for the transfer in the ER of the N-linked glycan precursor onto Asn residues of candidate proteins.  go_component nucleolus|GO:0005730|15496452|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function dolichyl-diphosphooligosaccharide-protein glycotransferase activity|GO:0004579||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum membrane|GO:0005789||ISS  go_component oligosaccharyltransferase complex|GO:0008250|15860005|ISS  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process plant-type cell wall organization|GO:0009664|15860005|IMP  go_process unidimensional cell growth|GO:0009826|15860005|IMP  go_process protein amino acid N-linked glycosylation via asparagine|GO:0018279|15860005|IMP  go_process protein amino acid N-linked glycosylation via asparagine|GO:0018279||ISS  go_process cellulose biosynthetic process|GO:0030244|15860005|IMP  go_function dolichyl-diphosphooligosaccharide-protein glycotransferase activity|GO:0004579||ISS  product DGL1; dolichyl-diphosphooligosaccharide-protein glycotransferase  note DGL1; FUNCTIONS IN: dolichyl-diphosphooligosaccharide-protein glycotransferase activity; INVOLVED IN: cellulose biosynthetic process, protein amino acid N-linked glycosylation via asparagine, plant-type cell wall organization, unidimensional cell growth; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit (InterPro:IPR005013); Has 299 Blast hits to 295 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 148; Fungi - 83; Plants - 24; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT5G66680.1p  transcript_id AT5G66680.1  protein_id AT5G66680.1p  transcript_id AT5G66680.1  
At5g66690	chr5:026625155	0.0	W/26625155-26626600	AT5G66690.1  CDS  gene_syn MSN2.8, MSN2_8, UGT72E2  gene UGT72E2  function UGT72E2 is an UDPG:coniferyl alcohol glucosyltransferase which glucosylates sinapyl- and coniferyl aldehydes as well as sinapyl- and coniferyl alcohol. The enzyme is thought to be involved in lignin metabolism. A knockdown mutant line (72E2KD) was obtained using RNAi silencing. A twofold reduction in coniferyl alcohol 4-<i>O</i>-glucoside and sinapyl alcohol 4-<i>O</i>-glucoside was detected in this line compared to wildtype. In comparison, both knockout and knockdown lines of UGT72E1 and UGT72E3, respectively, failed to display the same reduction in phenylpropanoid 4-<i>O</i>-glucosides.  go_component cellular_component|GO:0005575||ND  go_process lignin metabolic process|GO:0009808|15907484|TAS  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function coniferyl-alcohol glucosyltransferase activity|GO:0047209|15907484|IDA  go_function coniferyl-alcohol glucosyltransferase activity|GO:0047209|16995900|IMP  product UGT72E2; UDP-glycosyltransferase/ coniferyl-alcohol glucosyltransferase/ transferase, transferring glycosyl groups  note UGT72E2; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups, coniferyl-alcohol glucosyltransferase activity; INVOLVED IN: lignin metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT72E3; UDP-glycosyltransferase/ coniferyl-alcohol glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT5G26310.1); Has 4919 Blast hits to 4898 proteins in 326 species: Archae - 0; Bacteria - 144; Metazoa - 2000; Fungi - 17; Plants - 2645; Viruses - 86; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT5G66690.1p  transcript_id AT5G66690.1  protein_id AT5G66690.1p  transcript_id AT5G66690.1  
At5g66700	chr5:026634406	0.0	W/26634406-26634861,26635532-26635762	AT5G66700.1  CDS  gene_syn ATHB53, HB-8, HB53, MSN2.9, MSN2_9, homeobox-8  gene HB53  function Encodes a homeodomain protein. Member of HD-ZIP 1 family, most closely related to HB5. AtHB53 is auxin-inducible and its induction is inhibited by cytokinin, especially in roots therefore may be involved in root development.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to auxin stimulus|GO:0009733|15567172|IEP  go_process root development|GO:0048364|15567172|TAS  go_function DNA binding|GO:0003677|15567172|ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|15567172|ISS  product HB53; DNA binding / transcription factor  note HB53; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to auxin stimulus, regulation of transcription, DNA-dependent, root development; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40); DNA binding / transcription factor (TAIR:AT4G36740.1); Has 6077 Blast hits to 6073 proteins in 331 species: Archae - 0; Bacteria - 0; Metazoa - 4488; Fungi - 140; Plants - 1367; Viruses - 3; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT5G66700.1p  transcript_id AT5G66700.1  protein_id AT5G66700.1p  transcript_id AT5G66700.1  
At5g66710	chr5:026636609	0.0	W/26636609-26636874,26637287-26637422,26637528-26637723,26637796-26637917,26637998-26638153,26638223-26638564	AT5G66710.1  CDS  gene_syn MSN2.10, MSN2_10  go_component plasma membrane|GO:0005886|14506206|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Tyrosine-protein kinase, ATN1-like (InterPro:IPR015784), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT3G50720.1); Has 89596 Blast hits to 88636 proteins in 3512 species: Archae - 62; Bacteria - 7710; Metazoa - 40217; Fungi - 7434; Plants - 18088; Viruses - 424; Other Eukaryotes - 15661 (source: NCBI BLink).  protein_id AT5G66710.1p  transcript_id AT5G66710.1  protein_id AT5G66710.1p  transcript_id AT5G66710.1  
At5g66720	chr5:026640049	0.0	C/26640049-26640545,26639670-26639970,26639428-26639577,26639015-26639302	AT5G66720.2  CDS  gene_syn MSN2.11, MSN2_11  go_component chloroplast|GO:0009507|18431481|IDA  go_function catalytic activity|GO:0003824||IEA  go_process biological_process|GO:0008150||ND  product 5-azacytidine resistance protein -related  note 5-azacytidine resistance protein -related; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932); BEST Arabidopsis thaliana protein match is: catalytic (TAIR:AT4G16580.1); Has 578 Blast hits to 566 proteins in 151 species: Archae - 0; Bacteria - 6; Metazoa - 152; Fungi - 152; Plants - 118; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).  protein_id AT5G66720.2p  transcript_id AT5G66720.2  protein_id AT5G66720.2p  transcript_id AT5G66720.2  
At5g66720	chr5:026640049	0.0	C/26640049-26640545,26639670-26639979,26639428-26639577,26639015-26639302	AT5G66720.1  CDS  gene_syn MSN2.11, MSN2_11  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_function catalytic activity|GO:0003824||IEA  go_process biological_process|GO:0008150||ND  product 5-azacytidine resistance protein -related  note 5-azacytidine resistance protein -related; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932); BEST Arabidopsis thaliana protein match is: catalytic (TAIR:AT4G16580.1); Has 576 Blast hits to 566 proteins in 151 species: Archae - 0; Bacteria - 6; Metazoa - 154; Fungi - 152; Plants - 116; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink).  protein_id AT5G66720.1p  transcript_id AT5G66720.1  protein_id AT5G66720.1p  transcript_id AT5G66720.1  
At5g66730	chr5:026643760	0.0	C/26643760-26643883,26643272-26643668,26642913-26643187,26641914-26642620	AT5G66730.1  CDS  gene_syn MSN2.12, MSN2_12  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: AtIDD2 (Arabidopsis thaliana Indeterminate(ID)-Domain 2); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT3G50700.1); Has 48818 Blast hits to 17866 proteins in 272 species: Archae - 0; Bacteria - 118; Metazoa - 44861; Fungi - 332; Plants - 434; Viruses - 0; Other Eukaryotes - 3073 (source: NCBI BLink).  protein_id AT5G66730.1p  transcript_id AT5G66730.1  protein_id AT5G66730.1p  transcript_id AT5G66730.1  
At5g66740	chr5:026647114	0.0	W/26647114-26647401,26647649-26647990,26648076-26648558	AT5G66740.1  CDS  gene_syn MSN2.13, MSN2_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF620 (InterPro:IPR006873); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75160.1); Has 107 Blast hits to 107 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G66740.1p  transcript_id AT5G66740.1  protein_id AT5G66740.1p  transcript_id AT5G66740.1  
At5g66750	chr5:026649050	0.0	W/26649050-26649081,26649287-26649365,26649501-26649767,26649869-26649955,26650064-26650410,26650491-26650680,26650766-26650941,26651074-26651140,26651218-26651407,26651490-26651585,26651663-26651757,26651832-26651951,26652055-26652174,26652260-26652358,26652449-26652553,26652645-26652869	AT5G66750.1  CDS  gene_syn CHA1, CHR01, CHR1, CHROMATIN REMODELING 1, DDM1, DECREASED DNA METHYLATION 1, MSN2.14, MSN2_14, SOM1, SOM4, SOMNIFEROUS 1  gene CHR1  function Protein is similar to SWI2/SNF2 chromatin remodeling proteins. DDM1 is appears to act as a chromatin-remodeling ATPase involved in cytosine methylation in CG and non-CG contexts. Involved in gene silencing and maintenance of DNA methylation and histone methylation. Hypomethylation of many genomic regions occurs in ddm1 mutants, and can cause several phenotypic abnormalities, but some loci, such as BONSAI (At1g73177) can be hypermethylated in ddm1 mutants after several generations, leading to different phenotypes. DDM1 might be involved in establishing a heterochromain boundary. A line expressing an RNAi targeted against DDM1 shows some resistance to agrobacterium-mediated root transformation.  go_component nucleosome|GO:0000786|12403775|IDA  go_process methylation-dependent chromatin silencing|GO:0006346|9620857|IMP  go_process DNA mediated transformation|GO:0009294|17827277|IMP  go_function ATPase activity|GO:0016887|12403775|IDA  go_function helicase activity|GO:0004386||ISS  product CHR1 (CHROMATIN REMODELING 1); ATPase/ helicase  note CHROMATIN REMODELING 1 (CHR1); FUNCTIONS IN: helicase activity, ATPase activity; INVOLVED IN: methylation-dependent chromatin silencing, DNA mediated transformation; LOCATED IN: nucleosome; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: CHR17 (CHROMATIN REMODELING FACTOR17); ATP binding / DNA binding / DNA-dependent ATPase/ helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding / nucleosome binding (TAIR:AT5G18620.2); Has 13146 Blast hits to 11139 proteins in 1219 species: Archae - 94; Bacteria - 3113; Metazoa - 3211; Fungi - 2791; Plants - 784; Viruses - 271; Other Eukaryotes - 2882 (source: NCBI BLink).  protein_id AT5G66750.1p  transcript_id AT5G66750.1  protein_id AT5G66750.1p  transcript_id AT5G66750.1  
At5g66755	chr5:026653270	0.0	C/26653270-26653341	AT5G66755.1  tRNA  gene_syn 67933.TRNA-GLU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Glu (anticodon: TTC)  transcript_id AT5G66755.1  
At5g66760	chr5:026653776	0.0	W/26653776-26653883,26654064-26654231,26654326-26654413,26654544-26654690,26654785-26654925,26655113-26655198,26655274-26655366,26655462-26655525,26655619-26655762,26655886-26656073,26656182-26656356,26656439-26656609,26656708-26656777,26656872-26656992,26657084-26657224	AT5G66760.1  CDS  gene_syn MSN2.16, MSN2_16, SDH1-1  gene SDH1-1  function One of two genes in Arabidopsis that encode a flavoprotein subunit of the mitochondrial succinate dehydrogenase complex.  go_component cell wall|GO:0005618|16287169|IDA  go_component mitochondrion|GO:0005739|15276431|IDA  go_component mitochondrion|GO:0005739|17137349|IDA  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|12374303|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial respiratory chain complex II|GO:0005749|12374303|ISS  go_process mitochondrial electron transport, succinate to ubiquinone|GO:0006121|12374303|TAS  go_function succinate dehydrogenase activity|GO:0000104|12374303|TAS  product SDH1-1; ATP binding / succinate dehydrogenase  note SDH1-1; FUNCTIONS IN: succinate dehydrogenase activity, ATP binding; INVOLVED IN: mitochondrial electron transport, succinate to ubiquinone; LOCATED IN: mitochondrial respiratory chain complex II, mitochondrion, cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase, flavoprotein subunit (InterPro:IPR011281), Fumarate reductase/succinate dehydrogenase, FAD-binding site (InterPro:IPR003952), Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal (InterPro:IPR015939), Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal (InterPro:IPR003953), Succinate dehydrogenase or fumarate reductase, flavoprotein subunit (InterPro:IPR014006), Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal (InterPro:IPR004112); BEST Arabidopsis thaliana protein match is: SDH1-2; succinate dehydrogenase (TAIR:AT2G18450.1); Has 12678 Blast hits to 12657 proteins in 1493 species: Archae - 168; Bacteria - 5364; Metazoa - 253; Fungi - 247; Plants - 64; Viruses - 0; Other Eukaryotes - 6582 (source: NCBI BLink).  protein_id AT5G66760.1p  transcript_id AT5G66760.1  protein_id AT5G66760.1p  transcript_id AT5G66760.1  
At5g66770	chr5:026660723	0.0	W/26660723-26662477	AT5G66770.1  CDS  gene_syn MUD21.1, MUD21_1  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product scarecrow transcription factor family protein  note scarecrow transcription factor family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: scarecrow-like transcription factor 7 (SCL7) (TAIR:AT3G50650.1); Has 1412 Blast hits to 1381 proteins in 194 species: Archae - 0; Bacteria - 4; Metazoa - 6; Fungi - 4; Plants - 1394; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G66770.1p  transcript_id AT5G66770.1  protein_id AT5G66770.1p  transcript_id AT5G66770.1  
At5g66780	chr5:026663627	0.0	W/26663627-26663793,26663891-26664015,26664123-26664196	AT5G66780.1  CDS  gene_syn MUD21.2, MUD21_2  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: stamen; EXPRESSED DURING: 4 anthesis; Has 22 Blast hits to 22 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G66780.1p  transcript_id AT5G66780.1  protein_id AT5G66780.1p  transcript_id AT5G66780.1  
At5g66790	chr5:026665181	0.0	W/26665181-26665895,26666138-26666182,26666279-26667387	AT5G66790.1  CDS  gene_syn MUD21.3, MUD21_3  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G23450.2); Has 82191 Blast hits to 81274 proteins in 2530 species: Archae - 40; Bacteria - 7154; Metazoa - 35723; Fungi - 6449; Plants - 18436; Viruses - 321; Other Eukaryotes - 14068 (source: NCBI BLink).  protein_id AT5G66790.1p  transcript_id AT5G66790.1  protein_id AT5G66790.1p  transcript_id AT5G66790.1  
At5g66800	chr5:026671433	0.0	W/26671433-26671927,26672060-26672116	AT5G66800.1  CDS  gene_syn MUD21.4, MUD21_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50640.1); Has 81 Blast hits to 81 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G66800.1p  transcript_id AT5G66800.1  protein_id AT5G66800.1p  transcript_id AT5G66800.1  
At5g66810	chr5:026672926	0.0	W/26672926-26673393,26673536-26673628,26673794-26673874,26674038-26674147,26674237-26674372,26674466-26674564,26674759-26674846,26674950-26675494,26675619-26675816,26675914-26676255,26676358-26676450	AT5G66810.1  CDS  gene_syn MUD21.5, MUD21_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CTLH, C-terminal to LisH motif (InterPro:IPR006595); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61150.6); Has 214 Blast hits to 160 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 27; Plants - 86; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT5G66810.1p  transcript_id AT5G66810.1  protein_id AT5G66810.1p  transcript_id AT5G66810.1  
At5g66815	chr5:026677471	0.0	W/26677471-26677788	AT5G66815.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 13 Blast hits to 13 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G66815.1p  transcript_id AT5G66815.1  protein_id AT5G66815.1p  transcript_id AT5G66815.1  
At5g66816	chr5:026681495	0.0	W/26681495-26681800	AT5G66816.1  CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50610.1); Has 31 Blast hits to 19 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G66816.1p  transcript_id AT5G66816.1  protein_id AT5G66816.1p  transcript_id AT5G66816.1  
At5g66817	chr5:026682708	0.0	C/26682708-26682778	AT5G66817.1  tRNA  gene_syn 67934.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: GCC)  transcript_id AT5G66817.1  
At5g66820	chr5:026689097	0.0	W/26689097-26689164,26689619-26691110	AT5G66820.1  CDS  gene_syn MUD21.8, MUD21_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 31 Blast hits to 31 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 4; Plants - 7; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT5G66820.1p  transcript_id AT5G66820.1  protein_id AT5G66820.1p  transcript_id AT5G66820.1  
At5g66830	chr5:026691304	0.0	W/26691304-26692488	AT5G66830.1  CDS  gene_syn MUD21.9, MUD21_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G69090.1); Has 230 Blast hits to 219 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 230; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G66830.1p  transcript_id AT5G66830.1  protein_id AT5G66830.1p  transcript_id AT5G66830.1  
At5g66840	chr5:026695172	0.0	C/26695172-26695296,26694957-26695087,26694753-26694870,26694599-26694660,26694474-26694525,26694268-26694373,26694067-26694165,26693861-26693975,26692922-26693769	AT5G66840.1  CDS  gene_syn MUD21.10, MUD21_10  go_function nucleic acid binding|GO:0003676||IEA  go_component nucleus|GO:0005634||ISS  go_function DNA binding|GO:0003677||ISS  product SAP domain-containing protein  note SAP domain-containing protein; FUNCTIONS IN: DNA binding, nucleic acid binding; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034); Has 8987 Blast hits to 4530 proteins in 373 species: Archae - 8; Bacteria - 765; Metazoa - 3139; Fungi - 1008; Plants - 580; Viruses - 290; Other Eukaryotes - 3197 (source: NCBI BLink).  protein_id AT5G66840.1p  transcript_id AT5G66840.1  protein_id AT5G66840.1p  transcript_id AT5G66840.1  
At5g66850	chr5:026698717	0.0	C/26698717-26699159,26697977-26698630,26697790-26697877,26697626-26697688,26697352-26697515,26697186-26697261,26696998-26697057,26696781-26696906,26696471-26696689,26696301-26696380,26695965-26696142	AT5G66850.1  CDS  gene_syn MAPKKK5, MUD21.11, MUD21_11  gene MAPKKK5  function member of MEKK subfamily  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product MAPKKK5; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note MAPKKK5; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: MAP3KA; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT1G53570.3); Has 97786 Blast hits to 95267 proteins in 3354 species: Archae - 63; Bacteria - 8373; Metazoa - 42960; Fungi - 8664; Plants - 18702; Viruses - 637; Other Eukaryotes - 18387 (source: NCBI BLink).  protein_id AT5G66850.1p  transcript_id AT5G66850.1  protein_id AT5G66850.1p  transcript_id AT5G66850.1  
At5g66860	chr5:026702142	0.0	C/26702142-26702531,26701894-26702023,26701233-26701462	AT5G66860.1  CDS  gene_syn MUD21.12, MUD21_12  go_process translation|GO:0006412||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  product unknown protein  note INVOLVED IN: translation; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding (InterPro:IPR011035); BEST Arabidopsis thaliana protein match is: 50S ribosomal protein-related (TAIR:AT4G23620.1); Has 2346 Blast hits to 2345 proteins in 433 species: Archae - 0; Bacteria - 930; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1375 (source: NCBI BLink).  protein_id AT5G66860.1p  transcript_id AT5G66860.1  protein_id AT5G66860.1p  transcript_id AT5G66860.1  
At5g66870	chr5:026706621	0.0	W/26706621-26707562	AT5G66870.1  CDS  gene_syn ASL1, LBD36, MUD21.13, MUD21_13  gene ASL1  function Encodes LOB domain protein whose overexpression results in KNOX gene repression. Overexpression also results in plants with hyponastic leaves, downward pointing flowers and reduced apical dominance. May be involved in the transcriptional regulation of the homeobox gene BP (brevipedicellus) during lateral organ differentiation. Acts together with AS2 in proximal-distal symmetry determination.  go_component cellular_component|GO:0005575||ND  go_process proximal/distal pattern formation|GO:0009954|15821980|IGI  go_process leaf morphogenesis|GO:0009965|12787254|IMP  go_process regulation of transcription|GO:0045449|15821980|IMP  go_process petal development|GO:0048441|15821980|IGI  product ASL1  note ASL1; INVOLVED IN: petal development, proximal/distal pattern formation, leaf morphogenesis, regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883), Asymmetric leaves, AS2/LOB (InterPro:IPR017414); BEST Arabidopsis thaliana protein match is: LBD10 (LOB DOMAIN-CONTAINING PROTEIN 10) (TAIR:AT2G23660.2); Has 672 Blast hits to 669 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 15; Plants - 597; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT5G66870.1p  transcript_id AT5G66870.1  protein_id AT5G66870.1p  transcript_id AT5G66870.1  
At5g66880	chr5:026710697	0.0	W/26710697-26710870,26711208-26711282,26711376-26711477,26711551-26711604,26711705-26711797,26711911-26712003,26712085-26712189,26712266-26712364,26712442-26712732	AT5G66880.1  CDS  gene_syn SNRK2-3, SNRK2.3, SRK2I, SUCROSE NONFERMENTING 1 (SNF1)-RELATED PROTEIN KINASE 2-3, SUCROSE NONFERMENTING 1(SNF1)-RELATED PROTEIN KINASE 2.3  gene SNRK2.3  function encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Enzyme involved in the ABA signaling during seed germination, dormancy and seedling growth.  go_component cytosol|GO:0005829|18433157|IDA  go_process response to osmotic stress|GO:0006970|15292193|IDA  go_process response to salt stress|GO:0009651|15292193|IDA  go_process response to abscisic acid stimulus|GO:0009737|15292193|IDA  go_process response to abscisic acid stimulus|GO:0009737|17307925|IDA  go_process abscisic acid mediated signaling|GO:0009738|10634783|TAS  go_process response to gibberellin stimulus|GO:0009739|18941053|IGI  go_process positive regulation of abscisic acid mediated signaling|GO:0009789|17307925|IGI  go_process regulation of seed germination|GO:0010029|18941053|IGI  go_function protein kinase activity|GO:0004672|10634783|TAS  go_function protein kinase activity|GO:0004672|17307925|IDA  go_function kinase activity|GO:0016301|15292193|IDA  go_function kinase activity|GO:0016301||ISS  product SNRK2.3 (SUCROSE NONFERMENTING 1(SNF1)-RELATED PROTEIN KINASE 2.3); kinase/ protein kinase  note SUCROSE NONFERMENTING 1(SNF1)-RELATED PROTEIN KINASE 2.3 (SNRK2.3); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: in 7 processes; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Plant protein serine/threonine kinase-like (InterPro:IPR015740), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: SNRK2.2 (SNF1-RELATED PROTEIN KINASE 2.2); kinase/ protein kinase (TAIR:AT3G50500.1); Has 85739 Blast hits to 84380 proteins in 2298 species: Archae - 51; Bacteria - 7531; Metazoa - 37400; Fungi - 8210; Plants - 15424; Viruses - 448; Other Eukaryotes - 16675 (source: NCBI BLink).  protein_id AT5G66880.1p  transcript_id AT5G66880.1  protein_id AT5G66880.1p  transcript_id AT5G66880.1  
At5g66890	chr5:026714181	0.0	C/26714181-26714383,26713858-26714075,26712944-26713770	AT5G66890.1  CDS  gene_syn MUD21.15, MUD21_15  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative  note disease resistance protein (CC-NBS-LRR class), putative; INVOLVED IN: defense response; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT5G66900.1); Has 11944 Blast hits to 6535 proteins in 281 species: Archae - 26; Bacteria - 1075; Metazoa - 2473; Fungi - 55; Plants - 7722; Viruses - 10; Other Eukaryotes - 583 (source: NCBI BLink).  protein_id AT5G66890.1p  transcript_id AT5G66890.1  protein_id AT5G66890.1p  transcript_id AT5G66890.1  
At5g66900	chr5:026717115	0.0	C/26717115-26717757,26716621-26717024,26716159-26716511,26715880-26716076,26714931-26715763	AT5G66900.1  CDS  gene_syn MUD21.16, MUD21_16  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative  note disease resistance protein (CC-NBS-LRR class), putative; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: defense response, apoptosis; CONTAINS InterPro DOMAIN/s: Disease resistance, plant (InterPro:IPR014011), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT5G66910.1); Has 22201 Blast hits to 13213 proteins in 513 species: Archae - 34; Bacteria - 1477; Metazoa - 3674; Fungi - 138; Plants - 15962; Viruses - 2; Other Eukaryotes - 914 (source: NCBI BLink).  protein_id AT5G66900.1p  transcript_id AT5G66900.1  protein_id AT5G66900.1p  transcript_id AT5G66900.1  
At5g66910	chr5:026720485	0.0	C/26720485-26721133,26719998-26720401,26719545-26719906,26719251-26719450,26718338-26719170	AT5G66910.1  CDS  gene_syn MUD21.17, MUD21_17  go_component endomembrane system|GO:0012505||IEA  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative  note disease resistance protein (CC-NBS-LRR class), putative; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance, plant (InterPro:IPR014011), Leucine-rich repeat (InterPro:IPR001611), Mildew-resistance, broad-spectrum (InterPro:IPR008808); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT5G66900.1); Has 19423 Blast hits to 11897 proteins in 451 species: Archae - 22; Bacteria - 1182; Metazoa - 2936; Fungi - 103; Plants - 14487; Viruses - 0; Other Eukaryotes - 693 (source: NCBI BLink).  protein_id AT5G66910.1p  transcript_id AT5G66910.1  protein_id AT5G66910.1p  transcript_id AT5G66910.1  
At5g66920	chr5:026722963	0.0	W/26722963-26723130,26723249-26723358,26723623-26723990,26724080-26724425,26724512-26724877,26724960-26725038,26725167-26725370	AT5G66920.1  CDS  gene_syn MUD21.18, MUD21_18, SKU5 Similar 17, sks17  gene sks17  go_component cell wall|GO:0005618|14595688|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_function copper ion binding|GO:0005507||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product sks17 (SKU5 Similar 17); copper ion binding / oxidoreductase  note SKU5 Similar 17 (sks17); FUNCTIONS IN: oxidoreductase activity, copper ion binding; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: sks16 (SKU5 Similar 16); copper ion binding / pectinesterase (TAIR:AT2G23630.1); Has 3962 Blast hits to 3933 proteins in 693 species: Archae - 2; Bacteria - 1057; Metazoa - 257; Fungi - 1699; Plants - 788; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink).  protein_id AT5G66920.1p  transcript_id AT5G66920.1  protein_id AT5G66920.1p  transcript_id AT5G66920.1  
At5g66930	chr5:026725839	0.0	W/26725839-26725979,26726144-26726180,26726436-26726521,26726625-26726720,26726906-26727068,26727168-26727324,26727474-26727549	AT5G66930.3  CDS  gene_syn MUD21.19, MUD21_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1649 (InterPro:IPR012445).  protein_id AT5G66930.3p  transcript_id AT5G66930.3  protein_id AT5G66930.3p  transcript_id AT5G66930.3  
At5g66930	chr5:026725997	0.0	W/26725997-26726029,26726144-26726180,26726436-26726521,26726625-26726720,26726906-26727068,26727168-26727324,26727474-26727549	AT5G66930.2  CDS  gene_syn MUD21.19, MUD21_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1649 (InterPro:IPR012445); Has 168 Blast hits to 168 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 75; Fungi - 55; Plants - 28; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G66930.2p  transcript_id AT5G66930.2  protein_id AT5G66930.2p  transcript_id AT5G66930.2  
At5g66930	chr5:026725997	0.0	W/26725997-26726029,26726144-26726180,26726436-26726521,26726625-26726720,26726906-26727127	AT5G66930.1  CDS  gene_syn MUD21.19, MUD21_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1649 (InterPro:IPR012445); Has 157 Blast hits to 157 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 77; Fungi - 45; Plants - 25; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT5G66930.1p  transcript_id AT5G66930.1  protein_id AT5G66930.1p  transcript_id AT5G66930.1  
At5g66940	chr5:026727989	0.0	C/26727989-26728666	AT5G66940.1  CDS  gene_syn K8A10.1, K8A10_1  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product Dof-type zinc finger domain-containing protein  note Dof-type zinc finger domain-containing protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: OBP1 (OBF BINDING PROTEIN 1); DNA binding / protein binding / transcription factor (TAIR:AT3G50410.1); Has 618 Blast hits to 614 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 613; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT5G66940.1p  transcript_id AT5G66940.1  protein_id AT5G66940.1p  transcript_id AT5G66940.1  
At5g66950	chr5:026733333	0.0	W/26733333-26735945	AT5G66950.1  CDS  gene_syn K8A10.2, K8A10_2  go_component plasma membrane|GO:0005886|17317660|IDA  go_function catalytic activity|GO:0003824||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_process biological_process|GO:0008150||ND  product catalytic/ pyridoxal phosphate binding  note catalytic/ pyridoxal phosphate binding; FUNCTIONS IN: pyridoxal phosphate binding, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: catalytic/ pyridoxal phosphate binding (TAIR:AT2G23520.1); Has 427 Blast hits to 373 proteins in 107 species: Archae - 10; Bacteria - 20; Metazoa - 115; Fungi - 84; Plants - 126; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT5G66950.1p  transcript_id AT5G66950.1  protein_id AT5G66950.1p  transcript_id AT5G66950.1  
At5g66960	chr5:026739129	0.0	C/26739129-26739493,26738794-26738972,26738495-26738717,26738274-26738415,26737988-26738188,26737766-26737897,26737551-26737679,26737049-26737470,26736744-26736960,26736467-26736657,26736209-26736386	AT5G66960.1  CDS  gene_syn K8A10.3, K8A10_3  go_component membrane|GO:0016020|17432890|IDA  go_process proteolysis|GO:0006508||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function serine-type peptidase activity|GO:0008236||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type peptidase activity|GO:0008236||ISS  product prolyl oligopeptidase family protein  note prolyl oligopeptidase family protein; FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase active site region (InterPro:IPR001375), Peptidase S9A, oligopeptidase, N-terminal beta-propeller (InterPro:IPR004106), Peptidase S9A, prolyl oligopeptidase (InterPro:IPR002470); BEST Arabidopsis thaliana protein match is: prolyl oligopeptidase family protein (TAIR:AT1G69020.1); Has 6198 Blast hits to 6139 proteins in 776 species: Archae - 66; Bacteria - 2147; Metazoa - 350; Fungi - 69; Plants - 124; Viruses - 3; Other Eukaryotes - 3439 (source: NCBI BLink).  protein_id AT5G66960.1p  transcript_id AT5G66960.1  protein_id AT5G66960.1p  transcript_id AT5G66960.1  
At5g66970	chr5:026740901	0.0	C/26740901-26741125,26740726-26740825,26740445-26740647	AT5G66970.1  CDS  gene_syn K8A10.4, K8A10_4  go_process SRP-dependent cotranslational protein targeting to membrane|GO:0006614||IEA  go_function GTP binding|GO:0005525||IEA  go_component signal recognition particle, endoplasmic reticulum targeting|GO:0005786||ISS  go_function GTP binding|GO:0005525||ISS  product GTP binding  note GTP binding; FUNCTIONS IN: GTP binding; INVOLVED IN: SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: signal recognition particle, endoplasmic reticulum targeting; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Signal recognition particle, SRP54 subunit, GTPase (InterPro:IPR000897); BEST Arabidopsis thaliana protein match is: signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C) (TAIR:AT1G48900.2); Has 2509 Blast hits to 2509 proteins in 899 species: Archae - 239; Bacteria - 1367; Metazoa - 131; Fungi - 100; Plants - 83; Viruses - 0; Other Eukaryotes - 589 (source: NCBI BLink).  protein_id AT5G66970.1p  transcript_id AT5G66970.1  protein_id AT5G66970.1p  transcript_id AT5G66970.1  
At5g66980	chr5:026741563	0.0	W/26741563-26741631,26741720-26742230,26742311-26742429,26742521-26742826	AT5G66980.1  CDS  gene_syn K8A10.5, K8A10_5  go_component endomembrane system|GO:0012505||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcriptional factor B3 family protein  note transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, flower, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT3G06160.1); Has 237 Blast hits to 217 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 237; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G66980.1p  transcript_id AT5G66980.1  protein_id AT5G66980.1p  transcript_id AT5G66980.1  
At5g66985	chr5:026743412	0.0	W/26743412-26743663	AT5G66985.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, root, seed; EXPRESSED DURING: F mature embryo stage, E expanded cotyledon stage; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G66985.1p  transcript_id AT5G66985.1  protein_id AT5G66985.1p  transcript_id AT5G66985.1  
At5g66990	chr5:026745250	0.0	C/26745250-26745362,26745000-26745151,26744536-26744912,26744257-26744448	AT5G66990.1  CDS  gene_syn K8A10.6, K8A10_6  go_component cellular_component|GO:0005575||ND  go_function transcription factor activity|GO:0003700|11118137|ISS  product RWP-RK domain-containing protein  note RWP-RK domain-containing protein; FUNCTIONS IN: transcription factor activity; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: RWP-RK domain-containing protein (TAIR:AT1G18790.1); Has 225 Blast hits to 222 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 214; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT5G66990.1p  transcript_id AT5G66990.1  protein_id AT5G66990.1p  transcript_id AT5G66990.1  
At5g67000	chr5:026746677	0.0	C/26746677-26747231	AT5G67000.1  CDS  gene_syn K8A10.7, K8A10_7  function encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product DNA binding / transcription factor  note DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT2G20350.1); Has 2981 Blast hits to 2976 proteins in 173 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2977; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G67000.1p  transcript_id AT5G67000.1  protein_id AT5G67000.1p  transcript_id AT5G67000.1  
At5g67010	chr5:026749322	0.0	C/26749322-26749616,26749058-26749251	AT5G67010.1  CDS  gene_syn K8A10.8, K8A10_8  function encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT2G20350.1); Has 2990 Blast hits to 2984 proteins in 174 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2986; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G67010.1p  transcript_id AT5G67010.1  protein_id AT5G67010.1p  transcript_id AT5G67010.1  
At5g67020	chr5:026749962	0.0	W/26749962-26751146	AT5G67020.1  CDS  gene_syn K8A10.9, K8A10_9  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50340.1); Has 55 Blast hits to 55 proteins in 18 species: Archae - 0; Bacteria - 23; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G67020.1p  transcript_id AT5G67020.1  protein_id AT5G67020.1p  transcript_id AT5G67020.1  
At5g67030	chr5:026756585	0.0	C/26756585-26757090,26756337-26756499,26756178-26756252,26755989-26756089,26755784-26755899,26755487-26755698,26755311-26755402,26755124-26755238,26754935-26755038,26754807-26754852,26754661-26754725,26754451-26754537,26754268-26754335,26754110-26754189,26754026-26754028	AT5G67030.2  CDS  gene_syn ABA DEFICIENT 1, ABA1, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ATABA1, ATZEP, IBS3, IMPAIRED IN BABA-INDUCED STERILITY 3, K8A10.10, K8A10_10, LOS6, LOW EXPRESSION OF OSMOTIC STRESS-RESPONSIVE GENES 6, NON-PHOTOCHEMICAL QUENCHING 2, NPQ2, ZEAXANTHIN EPOXIDASE, ZEP  gene ABA1  function Encodes a single copy zeaxanthin epoxidase gene that functions in first step of the biosynthesis of the abiotic stress hormone abscisic acid (ABA). Mutants in this gene are unable to express female sterility in response to beta-aminobutyric acid, as wild type plants do.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process response to osmotic stress|GO:0006970|11779861|IMP  go_process response to heat|GO:0009408|15923322|IMP  go_process response to water deprivation|GO:0009414|11779861|IMP  go_process response to water deprivation|GO:0009414|16113213|IMP  go_process abscisic acid biosynthetic process|GO:0009688|11779861|TAS  go_process response to red light|GO:0010114|17449805|IEP  go_process sugar mediated signaling|GO:0010182|12663220|TAS  go_process xanthophyll biosynthetic process|GO:0016123|9668132|IMP  go_function zeaxanthin epoxidase activity|GO:0009540|11779861|IMP  go_function zeaxanthin epoxidase activity|GO:0009540|9668132|TAS  product ABA1 (ABA DEFICIENT 1); zeaxanthin epoxidase  note ABA DEFICIENT 1 (ABA1); FUNCTIONS IN: zeaxanthin epoxidase activity; INVOLVED IN: in 7 processes; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aromatic-ring hydroxylase-like (InterPro:IPR003042), Zeaxanthin epoxidase (InterPro:IPR017079), Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal (InterPro:IPR003953); BEST Arabidopsis thaliana protein match is: CTF2B; monooxygenase/ oxidoreductase (TAIR:AT2G29720.1); Has 4146 Blast hits to 4142 proteins in 623 species: Archae - 0; Bacteria - 2002; Metazoa - 0; Fungi - 1046; Plants - 283; Viruses - 0; Other Eukaryotes - 815 (source: NCBI BLink).  protein_id AT5G67030.2p  transcript_id AT5G67030.2  protein_id AT5G67030.2p  transcript_id AT5G67030.2  
At5g67030	chr5:026756585	0.0	C/26756585-26757090,26756337-26756499,26756178-26756252,26755989-26756089,26755784-26755899,26755487-26755698,26755311-26755402,26755124-26755238,26754935-26755038,26754807-26754852,26754661-26754725,26754451-26754537,26754281-26754335,26754110-26754198,26753941-26754028,26753745-26753834	AT5G67030.1  CDS  gene_syn ABA DEFICIENT 1, ABA1, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ATABA1, ATZEP, IBS3, IMPAIRED IN BABA-INDUCED STERILITY 3, K8A10.10, K8A10_10, LOS6, LOW EXPRESSION OF OSMOTIC STRESS-RESPONSIVE GENES 6, NON-PHOTOCHEMICAL QUENCHING 2, NPQ2, ZEAXANTHIN EPOXIDASE, ZEP  gene ABA1  function Encodes a single copy zeaxanthin epoxidase gene that functions in first step of the biosynthesis of the abiotic stress hormone abscisic acid (ABA). Mutants in this gene are unable to express female sterility in response to beta-aminobutyric acid, as wild type plants do.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process response to osmotic stress|GO:0006970|11779861|IMP  go_process response to heat|GO:0009408|15923322|IMP  go_process response to water deprivation|GO:0009414|11779861|IMP  go_process response to water deprivation|GO:0009414|16113213|IMP  go_process abscisic acid biosynthetic process|GO:0009688|11779861|TAS  go_process response to red light|GO:0010114|17449805|IEP  go_process sugar mediated signaling|GO:0010182|12663220|TAS  go_process xanthophyll biosynthetic process|GO:0016123|9668132|IMP  go_function zeaxanthin epoxidase activity|GO:0009540|11779861|IMP  go_function zeaxanthin epoxidase activity|GO:0009540|9668132|TAS  product ABA1 (ABA DEFICIENT 1); zeaxanthin epoxidase  note ABA DEFICIENT 1 (ABA1); FUNCTIONS IN: zeaxanthin epoxidase activity; INVOLVED IN: in 7 processes; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aromatic-ring hydroxylase-like (InterPro:IPR003042), SMAD/FHA domain (InterPro:IPR008984), Zeaxanthin epoxidase (InterPro:IPR017079), Monooxygenase, FAD-binding (InterPro:IPR002938), Forkhead-associated (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: CTF2B; monooxygenase/ oxidoreductase (TAIR:AT2G29720.1); Has 4195 Blast hits to 4191 proteins in 633 species: Archae - 2; Bacteria - 2026; Metazoa - 2; Fungi - 1048; Plants - 301; Viruses - 0; Other Eukaryotes - 816 (source: NCBI BLink).  protein_id AT5G67030.1p  transcript_id AT5G67030.1  protein_id AT5G67030.1p  transcript_id AT5G67030.1  
At5g67040	chr5:026758309	0.0	C/26758309-26758475,26757896-26758226	AT5G67040.1  CDS  gene_syn K8A10.11, K8A10_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55440.1); Has 140 Blast hits to 138 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 140; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G67040.1p  transcript_id AT5G67040.1  protein_id AT5G67040.1p  transcript_id AT5G67040.1  
At5g67050	chr5:026760868	0.0	C/26760868-26761165,26760557-26760787,26759829-26760463,26759482-26759751	AT5G67050.1  CDS  gene_syn K21H1.1, K21H1_1  go_component membrane|GO:0016020|17432890|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product lipase class 3 family protein  note lipase class 3 family protein; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: membrane; EXPRESSED IN: sepal, carpel, stamen, leaf; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: triacylglycerol lipase (TAIR:AT5G42930.1); Has 1149 Blast hits to 1144 proteins in 202 species: Archae - 0; Bacteria - 258; Metazoa - 69; Fungi - 247; Plants - 268; Viruses - 3; Other Eukaryotes - 304 (source: NCBI BLink).  protein_id AT5G67050.1p  transcript_id AT5G67050.1  protein_id AT5G67050.1p  transcript_id AT5G67050.1  
At5g67060	chr5:026766276	0.0	W/26766276-26767001	AT5G67060.1  CDS  gene_syn HEC1, HECATE 1, K21H1.2, K21H1_2  gene HEC1  go_component nucleus|GO:0005634||IEA  go_process transmitting tissue development|GO:0010500|17855426|IGI  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process carpel formation|GO:0048462|17855426|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product HEC1 (HECATE 1); transcription factor  note HECATE 1 (HEC1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: transmitting tissue development, carpel formation, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: HEC2 (HECATE 2); DNA binding / transcription factor (TAIR:AT3G50330.1); Has 2134 Blast hits to 2010 proteins in 139 species: Archae - 2; Bacteria - 175; Metazoa - 184; Fungi - 22; Plants - 1708; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT5G67060.1p  transcript_id AT5G67060.1  protein_id AT5G67060.1p  transcript_id AT5G67060.1  
At5g67070	chr5:026768120	0.0	W/26768120-26768509	AT5G67070.1  CDS  gene_syn K21H1.3, K21H1_3, RALFL34, ralf-like 34  gene RALFL34  function Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  go_component apoplast|GO:0048046|12611624|ISS  go_process cell-cell signaling|GO:0007267|12611624|ISS  go_function signal transducer activity|GO:0004871|12611624|TAS  product RALFL34 (ralf-like 34); signal transducer  note ralf-like 34 (RALFL34); FUNCTIONS IN: signal transducer activity; INVOLVED IN: cell-cell signaling; LOCATED IN: apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALFL33 (ralf-like 33); signal transducer (TAIR:AT4G15800.1); Has 143 Blast hits to 143 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 141; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G67070.1p  transcript_id AT5G67070.1  protein_id AT5G67070.1p  transcript_id AT5G67070.1  
At5g67080	chr5:026772726	0.0	W/26772726-26773760	AT5G67080.1  CDS  gene_syn K21H1.4, K21H1_4, MAPKKK19  gene MAPKKK19  function member of MEKK subfamily  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product MAPKKK19; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note MAPKKK19; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: MAPKKK20; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT3G50310.1); Has 81610 Blast hits to 80661 proteins in 2009 species: Archae - 44; Bacteria - 6172; Metazoa - 36143; Fungi - 7408; Plants - 16301; Viruses - 432; Other Eukaryotes - 15110 (source: NCBI BLink).  protein_id AT5G67080.1p  transcript_id AT5G67080.1  protein_id AT5G67080.1p  transcript_id AT5G67080.1  
At5g67090	chr5:026774111	0.0	C/26774111-26776321	AT5G67090.1  CDS  gene_syn K21H1.5, K21H1_5  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product subtilase family protein  note subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT3G14240.1); Has 5082 Blast hits to 4651 proteins in 827 species: Archae - 153; Bacteria - 2864; Metazoa - 157; Fungi - 353; Plants - 871; Viruses - 0; Other Eukaryotes - 684 (source: NCBI BLink).  protein_id AT5G67090.1p  transcript_id AT5G67090.1  protein_id AT5G67090.1p  transcript_id AT5G67090.1  
At5g67100	chr5:026776994	0.0	W/26776994-26778100,26778193-26778363,26778449-26778532,26778621-26778695,26778782-26778846,26779019-26779109,26779202-26779387,26779620-26779783,26779892-26780006,26780284-26780460,26780537-26780650,26780895-26781014,26781094-26781408,26781489-26781578,26781965-26782083,26782172-26782244,26782335-26782391,26782503-26782595,26782725-26782847,26782926-26783023,26783102-26783147,26783234-26783347,26783453-26783536,26783620-26783826,26783918-26783994,26784202-26784325,26784450-26784503,26784612-26784731,26784802-26784876,26784964-26785104	AT5G67100.1  CDS  gene_syn ICU2, INCURVATA2, K21H1.14, K21H1_14  gene ICU2  function Encodes the putative catalytic subunit of the DNA polymerase alpha. Interacts with genes involved in chromatin-mediated cellular memory. ICU2 genetically interacts with TERMINAL FLOWER2, the ortholog of HETEROCHROMATIN PROTEIN1 of animals and yeasts, and with the Polycomb group (PcG) gene CURLY LEAF. A number of regulatory genes were derepressed in the icu2-1 mutant, including genes associated with flowering time, floral meristem, and floral organ identity. Mutant has curled, involute leaves and causes early flowering.  go_component nucleus|GO:0005634||IEA  go_process negative regulation of flower development|GO:0009910||NAS  go_process leaf morphogenesis|GO:0009965|11063708|IMP  go_function DNA-directed DNA polymerase activity|GO:0003887|17873092|TAS  go_function DNA-directed DNA polymerase activity|GO:0003887||ISS  product ICU2 (INCURVATA2); DNA-directed DNA polymerase  note INCURVATA2 (ICU2); FUNCTIONS IN: DNA-directed DNA polymerase activity; INVOLVED IN: negative regulation of flower development, leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed DNA polymerase, family B, exonuclease (InterPro:IPR006133), DNA-directed DNA polymerase, family B, conserved region2 (InterPro:IPR017966), DNA-directed DNA polymerase, family B, conserved region (InterPro:IPR006134), Zinc finger, DNA-directed DNA polymerase, family B, alpha (InterPro:IPR015088), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), DNA-directed DNA polymerase, family B, conserved site (InterPro:IPR017964), DNA-directed DNA polymerase, family B, pol2 (InterPro:IPR004578), DNA-directed DNA polymerase, family B (InterPro:IPR006172); BEST Arabidopsis thaliana protein match is: EMB2780 (EMBRYO DEFECTIVE 2780); DNA binding / DNA-directed DNA polymerase/ nucleic acid binding / nucleotide binding (TAIR:AT5G63960.1); Has 4958 Blast hits to 4800 proteins in 1028 species: Archae - 330; Bacteria - 653; Metazoa - 334; Fungi - 291; Plants - 67; Viruses - 1641; Other Eukaryotes - 1642 (source: NCBI BLink).  protein_id AT5G67100.1p  transcript_id AT5G67100.1  protein_id AT5G67100.1p  transcript_id AT5G67100.1  
At5g67110	chr5:026786102	0.0	C/26786102-26786338,26785918-26785989,26785618-26785683,26785332-26785523	AT5G67110.3  CDS  gene_syn ALC, ALCATRAZ, K21H1.7, K21H1_7  gene ALC  function encodes a myc/bHLH transcription factor-like protein. Gene product is involved in fruit dehiscence. Mutant siliques fail to dehisce.  go_component nucleus|GO:0005634|11747817|ISS  go_process fruit dehiscence|GO:0010047|11747817|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11747817|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product ALC (ALCATRAZ); DNA binding / transcription factor  note ALCATRAZ (ALC); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: fruit dehiscence; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: SPT (SPATULA); DNA binding / transcription factor (TAIR:AT4G36930.1); Has 169 Blast hits to 169 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 169; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G67110.3p  transcript_id AT5G67110.3  protein_id AT5G67110.3p  transcript_id AT5G67110.3  
At5g67110	chr5:026786102	0.0	C/26786102-26786338,26785918-26785989,26785684-26785827	AT5G67110.2  CDS  gene_syn ALC, ALCATRAZ, K21H1.7, K21H1_7  gene ALC  function encodes a myc/bHLH transcription factor-like protein. Gene product is involved in fruit dehiscence. Mutant siliques fail to dehisce.  go_component nucleus|GO:0005634|11747817|ISS  go_process fruit dehiscence|GO:0010047|11747817|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11747817|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product ALC (ALCATRAZ); DNA binding / transcription factor  note ALCATRAZ (ALC); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: fruit dehiscence; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: SPT (SPATULA); DNA binding / transcription factor (TAIR:AT4G36930.1); Has 293 Blast hits to 293 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 292; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G67110.2p  transcript_id AT5G67110.2  protein_id AT5G67110.2p  transcript_id AT5G67110.2  
At5g67110	chr5:026786102	0.0	C/26786102-26786338,26785918-26785989,26785762-26785827,26785618-26785683,26785332-26785523	AT5G67110.1  CDS  gene_syn ALC, ALCATRAZ, K21H1.7, K21H1_7  gene ALC  function encodes a myc/bHLH transcription factor-like protein. Gene product is involved in fruit dehiscence. Mutant siliques fail to dehisce.  go_component nucleus|GO:0005634|11747817|ISS  go_process fruit dehiscence|GO:0010047|11747817|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11747817|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product ALC (ALCATRAZ); DNA binding / transcription factor  note ALCATRAZ (ALC); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: fruit dehiscence; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: SPT (SPATULA); DNA binding / transcription factor (TAIR:AT4G36930.1); Has 2271 Blast hits to 2271 proteins in 195 species: Archae - 0; Bacteria - 0; Metazoa - 388; Fungi - 49; Plants - 1826; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT5G67110.1p  transcript_id AT5G67110.1  protein_id AT5G67110.1p  transcript_id AT5G67110.1  
At5g67120	chr5:026789540	0.0	C/26789540-26789737,26789349-26789462,26788894-26789016,26788464-26788586,26787830-26788090	AT5G67120.1  CDS  gene_syn K21H1.8, K21H1_8  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G45180.1); Has 4719 Blast hits to 4700 proteins in 206 species: Archae - 3; Bacteria - 0; Metazoa - 1740; Fungi - 388; Plants - 1668; Viruses - 36; Other Eukaryotes - 884 (source: NCBI BLink).  protein_id AT5G67120.1p  transcript_id AT5G67120.1  protein_id AT5G67120.1p  transcript_id AT5G67120.1  
At5g67130	chr5:026791599	0.0	W/26791599-26791703,26791798-26791920,26792158-26792295,26792377-26792475,26792568-26792871,26792958-26793181,26793254-26793340,26793449-26793649	AT5G67130.1  CDS  gene_syn K21H1.9, K21H1_9  go_component plasma membrane|GO:0005886|17317660|IDA  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_function phospholipase C activity|GO:0004629||IEA  go_function phosphoric diester hydrolase activity|GO:0008081||IEA  product phospholipase C/ phosphoric diester hydrolase  note phospholipase C/ phosphoric diester hydrolase; FUNCTIONS IN: phospholipase C activity, phosphoric diester hydrolase activity; INVOLVED IN: intracellular signaling cascade, lipid metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific , X region (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946); BEST Arabidopsis thaliana protein match is: phospholipase C/ phosphoric diester hydrolase (TAIR:AT4G36945.1); Has 278 Blast hits to 275 proteins in 54 species: Archae - 0; Bacteria - 31; Metazoa - 6; Fungi - 119; Plants - 79; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT5G67130.1p  transcript_id AT5G67130.1  protein_id AT5G67130.1p  transcript_id AT5G67130.1  
At5g67140	chr5:026795125	0.0	C/26795125-26795213,26794872-26795018,26794495-26794630,26794304-26794402,26794009-26794224	AT5G67140.1  CDS  gene_syn K21H1.10, K21H1_10  go_component cellular_component|GO:0005575||ND  product F-box family protein  note F-box family protein; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: SKP2A (TAIR:AT1G21410.1); Has 1894 Blast hits to 1131 proteins in 126 species: Archae - 0; Bacteria - 18; Metazoa - 1148; Fungi - 193; Plants - 379; Viruses - 0; Other Eukaryotes - 156 (source: NCBI BLink).  protein_id AT5G67140.1p  transcript_id AT5G67140.1  protein_id AT5G67140.1p  transcript_id AT5G67140.1  
At5g67150	chr5:026795880	0.0	C/26795880-26797226	AT5G67150.1  CDS  gene_syn K21H1.11, K21H1_11  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT3G50280.1); Has 1367 Blast hits to 1362 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 151; Plants - 1216; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G67150.1p  transcript_id AT5G67150.1  protein_id AT5G67150.1p  transcript_id AT5G67150.1  
At5g67160	chr5:026797700	0.0	C/26797700-26799004	AT5G67160.1  CDS  gene_syn ENHANCED PSEUDOMONAS SUSCEPTIBILTY 1, EPS1, K21H1.12, K21H1_12  gene EPS1  function Encodes a member of the BAHD acyltransferase superfamily. Mutants have enhanced susceptibility to virulent and avirulent pathogens and are defective in pathogen induced SA biosynthesis. EPS1 may act upstream of SA biosynthesis as application of SA can rescue the mutant phenotype.  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process salicylic acid biosynthetic process|GO:0009697|19036031|IMP  go_function transferase activity|GO:0016740||ISS  product EPS1 (ENHANCED PSEUDOMONAS SUSCEPTIBILTY 1); transferase/ transferase, transferring acyl groups other than amino-acyl groups  note ENHANCED PSEUDOMONAS SUSCEPTIBILTY 1 (EPS1); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: salicylic acid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT5G67150.1); Has 1159 Blast hits to 1156 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 23; Plants - 1136; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G67160.1p  transcript_id AT5G67160.1  protein_id AT5G67160.1p  transcript_id AT5G67160.1  
At5g67170	chr5:026799851	0.0	W/26799851-26799901,26800031-26800131,26800221-26800296,26800376-26800525,26800609-26800670,26800746-26800830,26800920-26801069,26801137-26801388,26801484-26801581,26801661-26801763	AT5G67170.1  CDS  gene_syn K21H1.13, K21H1_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function cysteine-type peptidase activity|GO:0008234||ISS  product SEC-C motif-containing protein / OTU-like cysteine protease family protein  note SEC-C motif-containing protein / OTU-like cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323), SEC-C motif (InterPro:IPR004027); BEST Arabidopsis thaliana protein match is: OTU-like cysteine protease family protein (TAIR:AT2G27350.5); Has 1830 Blast hits to 1822 proteins in 469 species: Archae - 0; Bacteria - 744; Metazoa - 463; Fungi - 125; Plants - 159; Viruses - 10; Other Eukaryotes - 329 (source: NCBI BLink).  protein_id AT5G67170.1p  transcript_id AT5G67170.1  protein_id AT5G67170.1p  transcript_id AT5G67170.1  
At5g67170	chr5:026799851	0.0	W/26799851-26799901,26800034-26800131,26800221-26800296,26800376-26800525,26800609-26800670,26800746-26800830,26800920-26801069,26801137-26801388,26801484-26801581,26801661-26801763	AT5G67170.2  CDS  gene_syn K21H1.13, K21H1_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function cysteine-type peptidase activity|GO:0008234||ISS  product SEC-C motif-containing protein / OTU-like cysteine protease family protein  note SEC-C motif-containing protein / OTU-like cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323), SEC-C motif (InterPro:IPR004027); BEST Arabidopsis thaliana protein match is: OTU-like cysteine protease family protein (TAIR:AT2G27350.5); Has 1816 Blast hits to 1808 proteins in 469 species: Archae - 0; Bacteria - 744; Metazoa - 447; Fungi - 127; Plants - 159; Viruses - 10; Other Eukaryotes - 329 (source: NCBI BLink).  protein_id AT5G67170.2p  transcript_id AT5G67170.2  protein_id AT5G67170.2p  transcript_id AT5G67170.2  
At5g67180	chr5:026803594	0.0	C/26803594-26803934,26803485-26803510,26803347-26803377,26803158-26803245,26802903-26803048,26802755-26802799,26802569-26802663,26802417-26802493,26802119-26802328	AT5G67180.1  CDS  gene_syn K21H1.22, K21H1_22  go_component nucleus|GO:0005634|10948255|IC  go_component nucleus|GO:0005634|7919989|TAS  go_process regulation of transcription, DNA-dependent|GO:0006355|7756828|TAS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process multicellular organismal development|GO:0007275|9192694|ISS  go_process response to heat|GO:0009408||ISS  go_function DNA binding|GO:0003677|7756828|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|7919989|TAS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: multicellular organismal development, response to heat, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 (APETALA 2); transcription factor (TAIR:AT4G36920.1); Has 5425 Blast hits to 3225 proteins in 190 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 5325; Viruses - 9; Other Eukaryotes - 81 (source: NCBI BLink).  protein_id AT5G67180.1p  transcript_id AT5G67180.1  protein_id AT5G67180.1p  transcript_id AT5G67180.1  
At5g67190	chr5:026809135	0.0	C/26809135-26809689	AT5G67190.1  CDS  gene_syn K21H1.15, K21H1_15  function encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: male gametophyte, sepal, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: CEJ1 (COOPERATIVELY REGULATED BY ETHYLENE AND JASMONATE 1); DNA binding / transcription factor (TAIR:AT3G50260.1); Has 3711 Blast hits to 3646 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 3702; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT5G67190.1p  transcript_id AT5G67190.1  protein_id AT5G67190.1p  transcript_id AT5G67190.1  
At5g67200	chr5:026815112	0.0	C/26815112-26816555,26813893-26814458	AT5G67200.1  CDS  gene_syn K21H1.16, K21H1_16  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT3G50230.1); Has 83081 Blast hits to 61838 proteins in 2381 species: Archae - 62; Bacteria - 5784; Metazoa - 24755; Fungi - 3987; Plants - 37795; Viruses - 221; Other Eukaryotes - 10477 (source: NCBI BLink).  protein_id AT5G67200.1p  transcript_id AT5G67200.1  protein_id AT5G67200.1p  transcript_id AT5G67200.1  
At5g67210	chr5:026819019	0.0	W/26819019-26819972	AT5G67210.1  CDS  gene_syn K21H1.17, K21H1_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579, plant (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50220.1); Has 161 Blast hits to 161 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 152; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT5G67210.1p  transcript_id AT5G67210.1  protein_id AT5G67210.1p  transcript_id AT5G67210.1  
At5g67220	chr5:026821507	0.0	C/26821507-26821926,26821318-26821424,26820276-26821020	AT5G67220.1  CDS  gene_syn K21H1.18, K21H1_18  go_component mitochondrion|GO:0005739||IEA  go_process tRNA processing|GO:0008033||IEA  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function tRNA dihydrouridine synthase activity|GO:0017150||IEA  go_function FAD binding|GO:0050660||IEA  go_process regulation of nitrogen utilization|GO:0006808||ISS  product nitrogen regulation family protein  note nitrogen regulation family protein; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity; INVOLVED IN: regulation of nitrogen utilization, oxidation reduction, tRNA processing, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269), tRNA-dihydrouridine synthase, conserved site (InterPro:IPR018517); BEST Arabidopsis thaliana protein match is: FAD binding / catalytic/ tRNA dihydrouridine synthase (TAIR:AT3G49640.1); Has 7771 Blast hits to 7769 proteins in 1423 species: Archae - 42; Bacteria - 4261; Metazoa - 411; Fungi - 347; Plants - 96; Viruses - 0; Other Eukaryotes - 2614 (source: NCBI BLink).  protein_id AT5G67220.1p  transcript_id AT5G67220.1  protein_id AT5G67220.1p  transcript_id AT5G67220.1  
At5g67230	chr5:026822506	0.0	W/26822506-26823218,26823316-26823882,26823983-26824181	AT5G67230.1  CDS  gene_syn K21H1.19, K21H1_19  go_component membrane|GO:0016020||IEA  go_function galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity|GO:0015018||IEA  go_process biological_process|GO:0008150||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyl transferase family 43 protein  note glycosyl transferase family 43 protein; FUNCTIONS IN: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 43 (InterPro:IPR005027); BEST Arabidopsis thaliana protein match is: IRX14 (irregular xylem 14); transferase, transferring glycosyl groups / xylosyltransferase (TAIR:AT4G36890.1); Has 512 Blast hits to 512 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 356; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT5G67230.1p  transcript_id AT5G67230.1  protein_id AT5G67230.1p  transcript_id AT5G67230.1  
At5g67240	chr5:026828066	0.0	C/26828066-26828098,26827770-26827952,26827607-26827696,26827450-26827518,26827216-26827359,26826942-26827128,26826757-26826857,26826522-26826653,26826278-26826418,26826076-26826174,26825671-26825985,26825481-26825582,26825074-26825388,26824880-26824981,26824454-26824789	AT5G67240.1  CDS  gene_syn K21H1.20, K21H1_20, SDN3, SMALL RNA DEGRADING NUCLEASE 3  gene SDN3  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function exonuclease activity|GO:0004527||IEA  go_component intracellular|GO:0005622||ISS  go_function exonuclease activity|GO:0004527||ISS  product SDN3 (SMALL RNA DEGRADING NUCLEASE 3); exonuclease/ nucleic acid binding  note SMALL RNA DEGRADING NUCLEASE 3 (SDN3); FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T and DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: SDN1 (SMALL RNA DEGRADING NUCLEASE 1); 3 -5  exonuclease/ exonuclease (TAIR:AT3G50100.1); Has 2050 Blast hits to 1873 proteins in 217 species: Archae - 3; Bacteria - 68; Metazoa - 891; Fungi - 451; Plants - 212; Viruses - 0; Other Eukaryotes - 425 (source: NCBI BLink).  protein_id AT5G67240.1p  transcript_id AT5G67240.1  protein_id AT5G67240.1p  transcript_id AT5G67240.1  
At5g67245	chr5:026829476	0.0	C/26829476-26829661	AT5G67245.1  CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65609.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G67245.1p  transcript_id AT5G67245.1  protein_id AT5G67245.1p  transcript_id AT5G67245.1  
At5g67250	chr5:026831677	0.0	C/26831677-26833260	AT5G67250.1  CDS  gene_syn K21H1.6, K21H1_6, SKIP2, SKP1/ASK1 INTERACTING PROTEIN 2, VFB4, VIER F-BOX PROTEINE 4  gene SKIP2  function Encodes an SKP1 interacting partner (SKIP2).Encodes an F-box protein. Based on genetic analysis appears to be functionally redundant with VFB1,2, and 3. When expression of all 4 genes is reduced plants show defects in growth and reduced expression of auxin response genes.  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cytoplasm|GO:0005737|17435085|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|12169662|ISS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product SKIP2 (SKP1/ASK1 INTERACTING PROTEIN 2); ubiquitin-protein ligase  note SKP1/ASK1 INTERACTING PROTEIN 2 (SKIP2); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: VFB2 (VIER F-BOX PROTEINE 2); ubiquitin-protein ligase (TAIR:AT3G50080.1); Has 3316 Blast hits to 1969 proteins in 154 species: Archae - 0; Bacteria - 31; Metazoa - 1541; Fungi - 293; Plants - 1158; Viruses - 0; Other Eukaryotes - 293 (source: NCBI BLink).  protein_id AT5G67250.1p  transcript_id AT5G67250.1  protein_id AT5G67250.1p  transcript_id AT5G67250.1  
At5g67260	chr5:026836313	0.0	W/26836313-26836813,26836904-26837105,26837184-26837314,26837396-26837665	AT5G67260.1  CDS  gene_syn CYCD3;2, CYCLIN D3;2, K3G17.2, K3G17_2  gene CYCD3;2  function Encode CYCD3;2, a CYCD3 D-type cyclin. Important for determining cell number in developing lateral organs. Mediating cytokinin effects in apical growth and development.  go_component nucleus|GO:0005634||IEA  go_process regulation of cell proliferation|GO:0042127|17726100|IGI  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase activity|GO:0004693||ISS  product CYCD3;2 (CYCLIN D3;2); cyclin-dependent protein kinase  note CYCLIN D3;2 (CYCD3;2); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle, regulation of cell proliferation; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCD3;3 (CYCLIN D3;3); cyclin-dependent protein kinase (TAIR:AT3G50070.1); Has 2496 Blast hits to 2494 proteins in 239 species: Archae - 0; Bacteria - 0; Metazoa - 1332; Fungi - 246; Plants - 672; Viruses - 3; Other Eukaryotes - 243 (source: NCBI BLink).  protein_id AT5G67260.1p  transcript_id AT5G67260.1  protein_id AT5G67260.1p  transcript_id AT5G67260.1  
At5g67270	chr5:026841877	0.0	C/26841877-26841984,26841492-26841647,26841288-26841391,26840780-26841032,26840588-26840701,26840248-26840502	AT5G67270.1  CDS  gene_syn ATEB1C, K3G17.3, K3G17_3, microtubule end binding protein 1  gene ATEB1C  function encodes a homolog of animal microtubule-end-binding protein. There are two other members of this family. EB1 forms foci at regions where the minus ends of microtubules are gathered during mitosis and early cytokinesis.  go_component cell wall|GO:0005618|15469496|IDA  go_component nucleus|GO:0005634|15469496|IDA  go_component nucleolus|GO:0005730|15469496|IDA  go_component spindle|GO:0005819|15469496|IDA  go_component phragmoplast|GO:0009524|15469496|IDA  go_process thigmotropism|GO:0009652|18281505|IMP  go_process cortical cytoskeleton organization|GO:0030865|14557818|ISS  go_function microtubule binding|GO:0008017|14557818|ISS  go_function microtubule binding|GO:0008017||ISS  product ATEB1C (microtubule end binding protein 1); microtubule binding  note microtubule end binding protein 1 (ATEB1C); FUNCTIONS IN: microtubule binding; INVOLVED IN: thigmotropism, cortical cytoskeleton organization; LOCATED IN: nucleolus, cell wall, nucleus, spindle, phragmoplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), EB1, C-terminal (InterPro:IPR004953); BEST Arabidopsis thaliana protein match is: ATEB1B (END BINDING PROTEIN 1B); microtubule binding (TAIR:AT5G62500.1); Has 779 Blast hits to 741 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 502; Fungi - 93; Plants - 59; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).  protein_id AT5G67270.1p  transcript_id AT5G67270.1  protein_id AT5G67270.1p  transcript_id AT5G67270.1  
At5g67280	chr5:026843512	0.0	C/26843512-26845126,26842430-26843070	AT5G67280.1  CDS  gene_syn K3G17.4, K3G17_4, RLK, Receptor-like kinase  gene RLK  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product RLK (Receptor-like kinase); ATP binding / kinase/ protein serine/threonine kinase  note Receptor-like kinase (RLK); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT2G23300.1); Has 96535 Blast hits to 70364 proteins in 2716 species: Archae - 67; Bacteria - 7529; Metazoa - 34495; Fungi - 4210; Plants - 38867; Viruses - 199; Other Eukaryotes - 11168 (source: NCBI BLink).  protein_id AT5G67280.1p  transcript_id AT5G67280.1  protein_id AT5G67280.1p  transcript_id AT5G67280.1  
At5g67290	chr5:026848906	0.0	C/26848906-26849755,26848419-26848789	AT5G67290.1  CDS  gene_syn K8K14.1, K8K14_1  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function oxidoreductase activity|GO:0016491||ISS  product FAD-dependent oxidoreductase family protein  note FAD-dependent oxidoreductase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD dependent oxidoreductase (InterPro:IPR006076); Has 4766 Blast hits to 4696 proteins in 673 species: Archae - 74; Bacteria - 2349; Metazoa - 201; Fungi - 175; Plants - 42; Viruses - 0; Other Eukaryotes - 1925 (source: NCBI BLink).  protein_id AT5G67290.1p  transcript_id AT5G67290.1  protein_id AT5G67290.1p  transcript_id AT5G67290.1  
At5g67300	chr5:026854109	0.0	W/26854109-26855026	AT5G67300.1  CDS  gene_syn ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, ATMYB44, ATMYBR1, MYB DOMAIN PROTEIN R1, MYBR1  gene MYBR1  function Member of the R2R3 factor MYB gene family involved in mediating plant responses to a variety of abiotic stimiuli.  go_component nucleus|GO:0005634|18162593|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to stress|GO:0006950|18162593|IMP  go_process response to water deprivation|GO:0009414|18552355|IEP  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|18162593|IMP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to chitin|GO:0010200|17722694|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYBR1 (MYB DOMAIN PROTEIN R1); DNA binding / transcription factor  note MYB DOMAIN PROTEIN R1 (MYBR1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 12 processes; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB77; DNA binding / transcription factor (TAIR:AT3G50060.1); Has 6249 Blast hits to 5500 proteins in 358 species: Archae - 0; Bacteria - 0; Metazoa - 690; Fungi - 379; Plants - 3354; Viruses - 5; Other Eukaryotes - 1821 (source: NCBI BLink).  protein_id AT5G67300.1p  transcript_id AT5G67300.1  protein_id AT5G67300.1p  transcript_id AT5G67300.1  
At5g67310	chr5:026856007	0.0	C/26856007-26856924,26855313-26855918	AT5G67310.1  CDS  gene_syn CYP81G1, K8K14.3, K8K14_3  gene CYP81G1  function member of CYP81G  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP81G1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP81G1; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP81D1 (CYTOCHROME P450 81D1); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT5G36220.1); Has 25376 Blast hits to 25267 proteins in 1368 species: Archae - 32; Bacteria - 3336; Metazoa - 10421; Fungi - 4580; Plants - 5736; Viruses - 3; Other Eukaryotes - 1268 (source: NCBI BLink).  protein_id AT5G67310.1p  transcript_id AT5G67310.1  protein_id AT5G67310.1p  transcript_id AT5G67310.1  
At5g67320	chr5:026857268	0.0	W/26857268-26857328,26857754-26857899,26857987-26858485,26858565-26858659,26858766-26858812,26858897-26859047,26859202-26859265,26859639-26859797,26859885-26860006,26860119-26860193,26860277-26860330,26860426-26860499,26860600-26860674,26860755-26860974	AT5G67320.1  CDS  gene_syn HOS15, K8K14.4, K8K14_4, high expression of osmotically responsive genes 15  gene HOS15  function Encodes a WD-40 protein involved in histone deacetylation in response to abiotic stress.Identified in a screen for mutations with altered expression of stress induced genes. Functions as a repressor of cold tolerance induced genes. Loss of function mutants are hypersensitive to freezing.  go_component nucleus|GO:0005634|18356294|IDA  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_process response to cold|GO:0009409|18356294|IMP  go_process histone deacetylation|GO:0016575|18356294|IMP  product HOS15 (high expression of osmotically responsive genes 15)  note high expression of osmotically responsive genes 15 (HOS15); INVOLVED IN: response to cold, histone deacetylation; LOCATED IN: nucleus, CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif, subgroup (InterPro:IPR013720), WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), LisH dimerisation motif (InterPro:IPR006594); BEST Arabidopsis thaliana protein match is: TAF5 (TBP-ASSOCIATED FACTOR 5); nucleotide binding / transcription regulator (TAIR:AT5G25150.1); Has 174231 Blast hits to 68366 proteins in 1751 species: Archae - 396; Bacteria - 13127; Metazoa - 84437; Fungi - 23183; Plants - 10637; Viruses - 639; Other Eukaryotes - 41812 (source: NCBI BLink).  protein_id AT5G67320.1p  transcript_id AT5G67320.1  protein_id AT5G67320.1p  transcript_id AT5G67320.1  
At5g67330	chr5:026861822	0.0	W/26861822-26862345,26862483-26862619,26862703-26863580	AT5G67330.1  CDS  gene_syn ATNRAMP4, K8K14.5, K8K14_5, METAL TRANSPORTER NRAMP4, NATURAL RESISTANCE ASSOCIATED MACROPHAGE PROTEIN 4, NRAMP4  gene ATNRAMP4  function Encodes a member of the Nramp2 metal transporter family; like its homolog Atnramp3, localized in vacuolar membrane. Seedlings of double mutant, atnramp3-1 atnramp4-1, were arrested at early germination.  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component vacuolar membrane|GO:0005774|16270029|IDA  go_process manganese ion transport|GO:0006828|11500563|TAS  go_process cellular metal ion homeostasis|GO:0006875|11500563|NAS  go_process cellular iron ion homeostasis|GO:0006879|16270029|IGI  go_process response to nematode|GO:0009624|16478044|IEP  go_process response to iron ion|GO:0010039|19121106|IEP  go_process positive regulation of oxygen and reactive oxygen species metabolic process|GO:0010670|19121106|IGI  go_process cadmium ion transport|GO:0015691|11500563|TAS  go_process lead ion transport|GO:0015692|11500563|TAS  go_process metal ion transport|GO:0030001|11500563|TAS  go_process defense response to bacterium|GO:0042742|19121106|IMP  go_function manganese ion transmembrane transporter activity|GO:0005384|11500563|TAS  go_function inorganic anion transmembrane transporter activity|GO:0015103||ISS  go_function metal ion transmembrane transporter activity|GO:0046873|11500563|TAS  product ATNRAMP4; inorganic anion transmembrane transporter/ manganese ion transmembrane transporter/ metal ion transmembrane transporter  note ATNRAMP4; FUNCTIONS IN: manganese ion transmembrane transporter activity, inorganic anion transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: in 10 processes; LOCATED IN: vacuolar membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Natural resistance-associated macrophage protein (InterPro:IPR001046); BEST Arabidopsis thaliana protein match is: NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3); inorganic anion transmembrane transporter/ manganese ion transmembrane transporter/ metal ion transmembrane transporter (TAIR:AT2G23150.1); Has 2880 Blast hits to 2857 proteins in 799 species: Archae - 46; Bacteria - 1853; Metazoa - 314; Fungi - 170; Plants - 197; Viruses - 0; Other Eukaryotes - 300 (source: NCBI BLink).  protein_id AT5G67330.1p  transcript_id AT5G67330.1  protein_id AT5G67330.1p  transcript_id AT5G67330.1  
At5g67340	chr5:026864996	0.0	W/26864996-26865001,26865098-26865379,26865452-26865568,26865648-26867306,26867391-26867450	AT5G67340.1  CDS  gene_syn K8K14.6, K8K14_6  go_component ubiquitin ligase complex|GO:0000151||IEA  go_component endomembrane system|GO:0012505||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  product armadillo/beta-catenin repeat family protein / U-box domain-containing protein  note armadillo/beta-catenin repeat family protein / U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: endomembrane system, ubiquitin ligase complex; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding / ubiquitin-protein ligase (TAIR:AT2G23140.1); Has 4517 Blast hits to 2858 proteins in 224 species: Archae - 0; Bacteria - 14; Metazoa - 1541; Fungi - 429; Plants - 2028; Viruses - 0; Other Eukaryotes - 505 (source: NCBI BLink).  protein_id AT5G67340.1p  transcript_id AT5G67340.1  protein_id AT5G67340.1p  transcript_id AT5G67340.1  
At5g67350	chr5:026868521	0.0	C/26868521-26869429	AT5G67350.1  CDS  gene_syn K8K14.7, K8K14_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 37 Blast hits to 36 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT5G67350.1p  transcript_id AT5G67350.1  protein_id AT5G67350.1p  transcript_id AT5G67350.1  
At5g67360	chr5:026872192	0.0	C/26872192-26874465	AT5G67360.1  CDS  gene_syn ARA12, K8K14.8, K8K14_8  gene ARA12  function Encodes a subtilisin-like serine protease essential for mucilage release from seed coats.  go_component cell wall|GO:0005618|15593128|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_component extracellular region|GO:0005576|12413398|IDA  go_process proteolysis|GO:0006508||ISS  go_process seed coat development|GO:0010214|18266922|IMP  go_process mucilage metabolic process during seed coat development|GO:0048359|18266922|IMP  go_process mucilage extrusion from seed coat|GO:0080001|18266922|IMP  go_function serine-type endopeptidase activity|GO:0004252|12413398|IDA  product ARA12; serine-type endopeptidase  note ARA12; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: seed coat development, proteolysis, mucilage metabolic process during seed coat development, mucilage extrusion from seed coat; LOCATED IN: extracellular region, apoplast, cell wall, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT2G05920.1); Has 5330 Blast hits to 4549 proteins in 806 species: Archae - 137; Bacteria - 2910; Metazoa - 152; Fungi - 567; Plants - 903; Viruses - 0; Other Eukaryotes - 661 (source: NCBI BLink).  protein_id AT5G67360.1p  transcript_id AT5G67360.1  protein_id AT5G67360.1p  transcript_id AT5G67360.1  
At5g67370	chr5:026879190	0.0	C/26879190-26879465,26878966-26879118,26878801-26878878,26878616-26878711,26878179-26878214,26877908-26878089,26877667-26877829	AT5G67370.1  CDS  gene_syn K8K14.9, K8K14_9  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1230 (InterPro:IPR009631); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11840.1); Has 264 Blast hits to 264 proteins in 69 species: Archae - 0; Bacteria - 98; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).  protein_id AT5G67370.1p  transcript_id AT5G67370.1  protein_id AT5G67370.1p  transcript_id AT5G67370.1  
At5g67380	chr5:026883070	0.0	C/26883070-26883383,26882660-26882789,26882394-26882588,26882155-26882312,26881977-26882067,26881808-26881873,26881644-26881726,26881464-26881527,26881310-26881378,26881156-26881215	AT5G67380.1  CDS  gene_syn ATCKA1, ATPK12D, CASEIN KINASE ALPHA 1, CKA1, K8K14.10, K8K14_10  gene CKA1  function casein kinase II catalytic subunit alpha  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301|8061317|IDA  go_function kinase activity|GO:0016301||ISS  product CKA1 (CASEIN KINASE ALPHA 1); kinase  note CASEIN KINASE ALPHA 1 (CKA1); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: CKA2 (CASEIN KINASE II, ALPHA CHAIN 2); kinase (TAIR:AT3G50000.1); Has 64177 Blast hits to 63506 proteins in 1565 species: Archae - 27; Bacteria - 5348; Metazoa - 28150; Fungi - 7476; Plants - 8680; Viruses - 264; Other Eukaryotes - 14232 (source: NCBI BLink).  protein_id AT5G67380.1p  transcript_id AT5G67380.1  protein_id AT5G67380.1p  transcript_id AT5G67380.1  
At5g67380	chr5:026883070	0.0	C/26883070-26883383,26882759-26882789,26882394-26882588,26882155-26882312,26881977-26882067,26881808-26881873,26881644-26881726,26881464-26881527,26881310-26881378,26881156-26881215	AT5G67380.2  CDS  gene_syn ATCKA1, ATPK12D, CASEIN KINASE ALPHA 1, CKA1, K8K14.10, K8K14_10  gene CKA1  function casein kinase II catalytic subunit alpha  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301|8061317|IDA  go_function kinase activity|GO:0016301||ISS  product CKA1 (CASEIN KINASE ALPHA 1); kinase  note CASEIN KINASE ALPHA 1 (CKA1); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: CKA2 (CASEIN KINASE II, ALPHA CHAIN 2); kinase (TAIR:AT3G50000.1); Has 55009 Blast hits to 54436 proteins in 1427 species: Archae - 23; Bacteria - 3855; Metazoa - 24461; Fungi - 6999; Plants - 6579; Viruses - 213; Other Eukaryotes - 12879 (source: NCBI BLink).  protein_id AT5G67380.2p  transcript_id AT5G67380.2  protein_id AT5G67380.2p  transcript_id AT5G67380.2  
At5g67385	chr5:026884754	0.0	W/26884754-26884809,26884913-26884982,26885085-26885699,26885826-26886353,26886538-26887083	AT5G67385.1  CDS  go_process response to light stimulus|GO:0009416||IEA  go_function signal transducer activity|GO:0004871||IEA  go_function protein binding|GO:0005515||IEA  go_process response to light stimulus|GO:0009416||ISS  go_function signal transducer activity|GO:0004871||ISS  product protein binding / signal transducer  note protein binding / signal transducer; FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: response to light stimulus; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: phototropic-responsive protein, putative (TAIR:AT3G49970.1); Has 457 Blast hits to 447 proteins in 26 species: Archae - 0; Bacteria - 2; Metazoa - 24; Fungi - 2; Plants - 429; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G67385.1p  transcript_id AT5G67385.1  protein_id AT5G67385.1p  transcript_id AT5G67385.1  
At5g67390	chr5:026888432	0.0	C/26888432-26888512,26887883-26888332	AT5G67390.1  CDS  gene_syn K8K14.12, K8K14_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69360.1); Has 118 Blast hits to 118 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT5G67390.1p  transcript_id AT5G67390.1  protein_id AT5G67390.1p  transcript_id AT5G67390.1  
At5g67390	chr5:026888432	0.0	C/26888432-26888512,26887883-26888332	AT5G67390.2  CDS  gene_syn K8K14.12, K8K14_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69360.1); Has 118 Blast hits to 118 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT5G67390.2p  transcript_id AT5G67390.2  protein_id AT5G67390.2p  transcript_id AT5G67390.2  
At5g67400	chr5:026894896	0.0	W/26894896-26895111,26895198-26895398,26895563-26895728,26895894-26896300	AT5G67400.1  CDS  gene_syn K8K14.13, K8K14_13  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase 73 (PER73) (P73) (PRXR11)  note peroxidase 73 (PER73) (P73) (PRXR11); FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT3G49960.1); Has 2886 Blast hits to 2873 proteins in 211 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 83; Plants - 2764; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT5G67400.1p  transcript_id AT5G67400.1  protein_id AT5G67400.1p  transcript_id AT5G67400.1  
At5g67410	chr5:026896600	0.0	C/26896600-26897463	AT5G67410.1  CDS  gene_syn K8K14.14, K8K14_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14850.1); Has 74 Blast hits to 72 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 66; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT5G67410.1p  transcript_id AT5G67410.1  protein_id AT5G67410.1p  transcript_id AT5G67410.1  
At5g67411	chr5:026898664	0.0	C/26898664-26899097,26898401-26898575	AT5G67411.1  CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: scarecrow transcription factor family protein (TAIR:AT3G49950.1); Has 808 Blast hits to 802 proteins in 141 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 806; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G67411.1p  transcript_id AT5G67411.1  protein_id AT5G67411.1p  transcript_id AT5G67411.1  
At5g67420	chr5:026905232	0.0	C/26905232-26905415,26904576-26905144	AT5G67420.1  CDS  gene_syn K8K14.16, K8K14_16, LBD37, LOB DOMAIN-CONTAINING PROTEIN 37  gene LBD37  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product LBD37 (LOB DOMAIN-CONTAINING PROTEIN 37)  note LOB DOMAIN-CONTAINING PROTEIN 37 (LBD37); INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38) (TAIR:AT3G49940.1); Has 361 Blast hits to 361 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 361; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G67420.1p  transcript_id AT5G67420.1  protein_id AT5G67420.1p  transcript_id AT5G67420.1  
At5g67430	chr5:026910429	0.0	W/26910429-26910593,26910670-26910830,26911022-26911856	AT5G67430.1  CDS  gene_syn K8K14.17, K8K14_17  go_process metabolic process|GO:0008152||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product GCN5-related N-acetyltransferase (GNAT) family protein  note GCN5-related N-acetyltransferase (GNAT) family protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: HLS1 (HOOKLESS 1); N-acetyltransferase (TAIR:AT4G37580.1); Has 66 Blast hits to 66 proteins in 16 species: Archae - 6; Bacteria - 12; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G67430.1p  transcript_id AT5G67430.1  protein_id AT5G67430.1p  transcript_id AT5G67430.1  
At5g67440	chr5:026913483	0.0	C/26913483-26914646,26912947-26913411	AT5G67440.2  CDS  gene_syn K8K14.18, K8K14_18, NAKED PINS IN YUC MUTANTS 3, NPY3  gene NPY3  function A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.  go_function signal transducer activity|GO:0004871||IEA  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process response to light stimulus|GO:0009416||ISS  go_process flower development|GO:0009908|19075219|IGI  go_function signal transducer activity|GO:0004871||ISS  product NPY3 (NAKED PINS IN YUC MUTANTS 3); protein binding / signal transducer  note NAKED PINS IN YUC MUTANTS 3 (NPY3); FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: flower development, response to light stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: NPY5 (NAKED PINS IN YUC MUTANTS 5); protein binding / signal transducer (TAIR:AT4G37590.1); Has 426 Blast hits to 414 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 426; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G67440.2p  transcript_id AT5G67440.2  protein_id AT5G67440.2p  transcript_id AT5G67440.2  
At5g67440	chr5:026914845	0.0	C/26914845-26914906,26914704-26914773,26913483-26914625,26912947-26913411	AT5G67440.1  CDS  gene_syn K8K14.18, K8K14_18, NAKED PINS IN YUC MUTANTS 3, NPY3  gene NPY3  function A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.  go_function signal transducer activity|GO:0004871||IEA  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process response to light stimulus|GO:0009416||ISS  go_process flower development|GO:0009908|19075219|IGI  go_function signal transducer activity|GO:0004871||ISS  product NPY3 (NAKED PINS IN YUC MUTANTS 3); protein binding / signal transducer  note NAKED PINS IN YUC MUTANTS 3 (NPY3); FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: flower development, response to light stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: NPY5 (NAKED PINS IN YUC MUTANTS 5); protein binding / signal transducer (TAIR:AT4G37590.1); Has 444 Blast hits to 426 proteins in 21 species: Archae - 0; Bacteria - 8; Metazoa - 2; Fungi - 2; Plants - 428; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT5G67440.1p  transcript_id AT5G67440.1  protein_id AT5G67440.1p  transcript_id AT5G67440.1  
At5g67450	chr5:026919142	0.0	C/26919142-26919879	AT5G67450.1  CDS  gene_syn ARABIDOPSIS ZINC-FINGER PROTEIN 1, AZF1, K8K14.19, K8K14_19  gene AZF1  function Encodes zinc-finger protein. mRNA levels are elevated in response to low temperature, cold temperatures and high salt. The protein is localized to the nucleus and acts as a transcriptional repressor.  go_component nucleus|GO:0005634|10806347|ISS  go_component nucleus|GO:0005634|15333755|IDA  go_process response to cold|GO:0009409|10806347|IEP  go_process response to chitin|GO:0010200|17722694|IEP  go_process hyperosmotic salinity response|GO:0042538|10806347|IEP  go_function nucleic acid binding|GO:0003676||ISS  go_function DNA binding|GO:0003677|10806347|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  go_function transcription repressor activity|GO:0016564|15333755|IDA  product AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1); DNA binding / nucleic acid binding / transcription factor/ transcription repressor/ zinc ion binding  note ARABIDOPSIS ZINC-FINGER PROTEIN 1 (AZF1); FUNCTIONS IN: transcription repressor activity, transcription factor activity, DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: hyperosmotic salinity response, response to cold, response to chitin; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT3G49930.1); Has 3651 Blast hits to 2956 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 3027; Fungi - 4; Plants - 520; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).  protein_id AT5G67450.1p  transcript_id AT5G67450.1  protein_id AT5G67450.1p  transcript_id AT5G67450.1  
At5g67455	chr5:026921672	0.0	W/26921672-26921743	AT5G67455.1  tRNA  gene_syn 67938.TRNA-MET-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Met (anticodon: CAT)  transcript_id AT5G67455.1  
At5g67460	chr5:026923223	0.0	C/26923223-26923274,26922099-26923157,26921984-26922015	AT5G67460.1  CDS  gene_syn K9I9.2, K9I9_2  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family protein 17  note glycosyl hydrolase family protein 17; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79480.2); Has 964 Blast hits to 882 proteins in 74 species: Archae - 0; Bacteria - 18; Metazoa - 9; Fungi - 11; Plants - 883; Viruses - 15; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT5G67460.1p  transcript_id AT5G67460.1  protein_id AT5G67460.1p  transcript_id AT5G67460.1  
At5g67470	chr5:026926835	0.0	W/26926835-26928300,26928392-26928591,26929099-26929340,26929421-26930212	AT5G67470.1  CDS  gene_syn K9I9.3, K9I9_3  go_component plasma membrane|GO:0005886|17317660|IDA  go_process cellular component organization|GO:0016043||IEA  go_process actin cytoskeleton organization|GO:0030036||IEA  go_component cell wall|GO:0005618|15469496|IDA  go_component nucleus|GO:0005634|15469496|IDA  go_component nucleolus|GO:0005730|15469496|IDA  go_component cytoplasm|GO:0005737|15469496|IDA  go_component spindle|GO:0005819|15469496|IDA  go_component phragmoplast|GO:0009524|15469496|IDA  go_function actin binding|GO:0003779|12417149|ISS  go_function actin binding|GO:0003779|15256004|ISS  go_function actin binding|GO:0003779||ISS  product formin homology 2 domain-containing protein / FH2 domain-containing protein  note formin homology 2 domain-containing protein / FH2 domain-containing protein; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; LOCATED IN: in 7 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding FH2 and DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: AFH1 (FORMIN HOMOLOGY 1); actin binding / actin filament binding / protein binding (TAIR:AT3G25500.1); Has 39753 Blast hits to 25508 proteins in 1088 species: Archae - 78; Bacteria - 4537; Metazoa - 17129; Fungi - 5383; Plants - 5836; Viruses - 1403; Other Eukaryotes - 5387 (source: NCBI BLink).  protein_id AT5G67470.1p  transcript_id AT5G67470.1  protein_id AT5G67470.1p  transcript_id AT5G67470.1  
At5g67480	chr5:026932260	0.0	C/26932260-26932496,26931989-26932119,26931574-26931880,26931055-26931498	AT5G67480.1  CDS  gene_syn ATBT4, BT4, BTB AND TAZ DOMAIN PROTEIN 4, K9I9.4, K9I9_4  gene BT4  function BTB and TAZ domain protein. Located in cytoplasm and expressed in fruit, flower and leaves.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component cytoplasm|GO:0005737|19054356|IDA  go_process response to auxin stimulus|GO:0009733|19054356|IEP  go_process response to gibberellin stimulus|GO:0009739|17933900|IEP  go_function protein binding|GO:0005515||ISS  go_function transcription regulator activity|GO:0030528|10748221|TAS  product BT4 (BTB AND TAZ DOMAIN PROTEIN 4); protein binding / transcription regulator  note BTB AND TAZ DOMAIN PROTEIN 4 (BT4); FUNCTIONS IN: protein binding, transcription regulator activity; INVOLVED IN: response to auxin stimulus, response to gibberellin stimulus; LOCATED IN: plasma membrane, cytoplasm; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), Zinc finger, TAZ-type (InterPro:IPR000197), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BT5 (BTB AND TAZ DOMAIN PROTEIN 5); protein binding / transcription regulator (TAIR:AT4G37610.1); Has 900 Blast hits to 896 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 663; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT5G67480.1p  transcript_id AT5G67480.1  protein_id AT5G67480.1p  transcript_id AT5G67480.1  
At5g67480	chr5:026932260	0.0	C/26932260-26932529,26931989-26932119,26931574-26931880,26931055-26931498	AT5G67480.2  CDS  gene_syn ATBT4, BT4, BTB AND TAZ DOMAIN PROTEIN 4, K9I9.4, K9I9_4  gene BT4  function BTB and TAZ domain protein. Located in cytoplasm and expressed in fruit, flower and leaves.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component cytoplasm|GO:0005737|19054356|IDA  go_process response to auxin stimulus|GO:0009733|19054356|IEP  go_process response to gibberellin stimulus|GO:0009739|17933900|IEP  go_function protein binding|GO:0005515||ISS  go_function transcription regulator activity|GO:0030528|10748221|TAS  product BT4 (BTB AND TAZ DOMAIN PROTEIN 4); protein binding / transcription regulator  note BTB AND TAZ DOMAIN PROTEIN 4 (BT4); FUNCTIONS IN: protein binding, transcription regulator activity; INVOLVED IN: response to auxin stimulus, response to gibberellin stimulus; LOCATED IN: plasma membrane, cytoplasm; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), Zinc finger, TAZ-type (InterPro:IPR000197), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BT5 (BTB AND TAZ DOMAIN PROTEIN 5); protein binding / transcription regulator (TAIR:AT4G37610.1); Has 903 Blast hits to 899 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 665; Fungi - 0; Plants - 201; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT5G67480.2p  transcript_id AT5G67480.2  protein_id AT5G67480.2p  transcript_id AT5G67480.2  
At5g67488	chr5:026933950	0.0	W/26933950-26934867	AT5G67488.1  ncRNA  function Potential natural antisense gene, locus overlaps with AT5G67490  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT5G67488.1  
At5g67490	chr5:026934368	0.0	C/26934368-26934694	AT5G67490.1  CDS  gene_syn K9I9.5, K9I9_5  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1674 (InterPro:IPR012875); Has 340 Blast hits to 340 proteins in 113 species: Archae - 0; Bacteria - 97; Metazoa - 109; Fungi - 4; Plants - 24; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).  protein_id AT5G67490.1p  transcript_id AT5G67490.1  protein_id AT5G67490.1p  transcript_id AT5G67490.1  
At5g67500	chr5:026935223	0.0	W/26935223-26935271,26935501-26935568,26936148-26936258,26936346-26936432,26936524-26936732,26936817-26937123	AT5G67500.1  CDS  gene_syn ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, ATVDAC2, K9I9.6, K9I9_6, VDAC2, VOLTAGE DEPENDENT ANION CHANNEL 2  gene VDAC2  function Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.  go_component cell wall|GO:0005618|16287169|IDA  go_component mitochondrion|GO:0005739|15276431|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|19326079|IDA  go_component mitochondrial outer membrane|GO:0005741||ISS  go_component chloroplast|GO:0009507|19326079|IDA  go_process anion transport|GO:0006820||ISS  go_process response to bacterium|GO:0009617|19326079|IEP  go_function voltage-gated anion channel activity|GO:0008308|19326079|IMP  go_function voltage-gated anion channel activity|GO:0008308||ISS  product VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2); voltage-gated anion channel  note VOLTAGE DEPENDENT ANION CHANNEL 2 (VDAC2); FUNCTIONS IN: voltage-gated anion channel activity; INVOLVED IN: response to bacterium, anion transport; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Porin, eukaryotic type (InterPro:IPR001925); BEST Arabidopsis thaliana protein match is: VDAC5 (VOLTAGE DEPENDENT ANION CHANNEL 5); voltage-gated anion channel (TAIR:AT3G49920.1); Has 627 Blast hits to 625 proteins in 145 species: Archae - 0; Bacteria - 0; Metazoa - 347; Fungi - 84; Plants - 182; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT5G67500.1p  transcript_id AT5G67500.1  protein_id AT5G67500.1p  transcript_id AT5G67500.1  
At5g67510	chr5:026937970	0.0	C/26937970-26938410	AT5G67510.1  CDS  gene_syn K9I9.7, K9I9_7  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L26 (RPL26B)  note 60S ribosomal protein L26 (RPL26B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Ribosomal protein L26, eukaryotic/archaeal (InterPro:IPR005756), Ribosomal protein L24, SH3-like (InterPro:IPR014723), Ribosomal protein L24/L26, conserved site (InterPro:IPR005825), KOW (InterPro:IPR005824); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L26 (RPL26A) (TAIR:AT3G49910.1); Has 893 Blast hits to 893 proteins in 319 species: Archae - 233; Bacteria - 15; Metazoa - 308; Fungi - 91; Plants - 68; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink).  protein_id AT5G67510.1p  transcript_id AT5G67510.1  protein_id AT5G67510.1p  transcript_id AT5G67510.1  
At5g67520	chr5:026939342	0.0	W/26939342-26939570,26939753-26939884,26939972-26940240,26940312-26940396,26940532-26940578,26940672-26940842	AT5G67520.1  CDS  gene_syn K9I9.8, K9I9_8  go_process sulfate assimilation|GO:0000103||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||IEA  go_function transferase activity, transferring phosphorus-containing groups|GO:0016772||IEA  go_component chloroplast|GO:0009507|19304933|IDA  go_process sulfate assimilation|GO:0000103||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  go_function transferase activity, transferring phosphorus-containing groups|GO:0016772||ISS  product adenylylsulfate kinase, putative  note adenylylsulfate kinase, putative; FUNCTIONS IN: kinase activity, transferase activity, transferring phosphorus-containing groups, ATP binding; INVOLVED IN: sulfate assimilation; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Adenylylsulphate kinase, C-terminal (InterPro:IPR002891); BEST Arabidopsis thaliana protein match is: AKN2 (APS-kinase 2); ATP binding / adenylylsulfate kinase/ kinase/ transferase, transferring phosphorus-containing groups (TAIR:AT4G39940.1); Has 3571 Blast hits to 3571 proteins in 926 species: Archae - 35; Bacteria - 1801; Metazoa - 220; Fungi - 202; Plants - 70; Viruses - 2; Other Eukaryotes - 1241 (source: NCBI BLink).  protein_id AT5G67520.1p  transcript_id AT5G67520.1  protein_id AT5G67520.1p  transcript_id AT5G67520.1  
At5g67530	chr5:026941260	0.0	W/26941260-26941387,26941467-26941529,26941612-26941715,26941799-26941890,26941963-26942052,26942135-26942210,26942306-26942664,26942741-26942997,26943090-26943378,26943454-26943564,26943660-26943878	AT5G67530.1  CDS  gene_syn K9I9.9, K9I9_9  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_process protein folding|GO:0006457||ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein  note peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein (TAIR:AT1G01940.1); Has 12110 Blast hits to 12044 proteins in 1531 species: Archae - 82; Bacteria - 3952; Metazoa - 2391; Fungi - 977; Plants - 716; Viruses - 0; Other Eukaryotes - 3992 (source: NCBI BLink).  protein_id AT5G67530.1p  transcript_id AT5G67530.1  protein_id AT5G67530.1p  transcript_id AT5G67530.1  
At5g67540	chr5:026945173	0.0	C/26945173-26945757,26944253-26945083	AT5G67540.2  CDS  gene_syn K9I9.10, K9I9_10  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_component cellular_component|GO:0005575||ND  product glycosyl hydrolase family protein 43  note glycosyl hydrolase family protein 43; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 43 (InterPro:IPR006710); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family protein 43 (TAIR:AT3G49880.1); Has 568 Blast hits to 568 proteins in 111 species: Archae - 0; Bacteria - 396; Metazoa - 1; Fungi - 99; Plants - 27; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT5G67540.2p  transcript_id AT5G67540.2  protein_id AT5G67540.2p  transcript_id AT5G67540.2  
At5g67540	chr5:026946016	0.0	C/26946016-26946058,26945173-26945699,26944253-26945083	AT5G67540.1  CDS  gene_syn K9I9.10, K9I9_10  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_component cellular_component|GO:0005575||ND  product glycosyl hydrolase family protein 43  note glycosyl hydrolase family protein 43; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 43 (InterPro:IPR006710); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family protein 43 (TAIR:AT3G49880.1); Has 568 Blast hits to 568 proteins in 111 species: Archae - 0; Bacteria - 396; Metazoa - 1; Fungi - 99; Plants - 27; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT5G67540.1p  transcript_id AT5G67540.1  protein_id AT5G67540.1p  transcript_id AT5G67540.1  
At5g67550	chr5:026948927	0.0	C/26948927-26949112,26948665-26948852,26948312-26948587,26948174-26948232,26948046-26948082,26947880-26947951,26947651-26947801,26947385-26947561,26946908-26947291	AT5G67550.1  CDS  gene_syn K9I9.11, K9I9_11  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G71110.1); Has 85 Blast hits to 82 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT5G67550.1p  transcript_id AT5G67550.1  protein_id AT5G67550.1p  transcript_id AT5G67550.1  
At5g67560	chr5:026950579	0.0	W/26950579-26950616,26951057-26951138,26951226-26951258,26951339-26951460,26951547-26951708,26951796-26951913	AT5G67560.1  CDS  gene_syn ADP-ribosylation factor-like A1D, ATARLA1D, K9I9.13, K9I9_13  gene ATARLA1D  function A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_function GTP binding|GO:0005525|12644670|ISS  product ATARLA1D (ADP-ribosylation factor-like A1D); GTP binding  note ADP-ribosylation factor-like A1D (ATARLA1D); FUNCTIONS IN: GTP binding; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ATARLA1C (ADP-ribosylation factor-like A1C); GTP binding (TAIR:AT3G49870.1); Has 15427 Blast hits to 15423 proteins in 620 species: Archae - 21; Bacteria - 393; Metazoa - 7732; Fungi - 1850; Plants - 1690; Viruses - 3; Other Eukaryotes - 3738 (source: NCBI BLink).  protein_id AT5G67560.1p  transcript_id AT5G67560.1  protein_id AT5G67560.1p  transcript_id AT5G67560.1  
At5g67570	chr5:026952352	0.0	W/26952352-26952923,26953005-26953196,26953289-26953370,26953480-26953671,26953783-26953896,26953994-26954087,26954178-26954335,26954416-26954847	AT5G67570.1  CDS  gene_syn DELAYED GREENING 1, DG1, EMB1408, K9I9.14, K9I9_14, embryo defective 1408  gene DG1  function Encodes a pentratricopeptide repeat containing protein that is targeted to the chloroplast. Mutants have pale young leave and reduced accumulation of plastid encoded transcripts suggesting a role for DG1 in regulation of plastid gene expression.  go_component chloroplast|GO:0009507|18400937|IDA  go_process chloroplast organization|GO:0009658|18400937|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product DG1 (DELAYED GREENING 1)  note DELAYED GREENING 1 (DG1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy, chloroplast organization; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: emb2279 (embryo defective 2279) (TAIR:AT1G30610.1); Has 8714 Blast hits to 3432 proteins in 101 species: Archae - 0; Bacteria - 6; Metazoa - 35; Fungi - 56; Plants - 8281; Viruses - 0; Other Eukaryotes - 336 (source: NCBI BLink).  protein_id AT5G67570.1p  transcript_id AT5G67570.1  protein_id AT5G67570.1p  transcript_id AT5G67570.1  
At5g67580	chr5:026956924	0.0	C/26956924-26957073,26956626-26956846,26956457-26956541,26956300-26956383,26955843-26956202	AT5G67580.1  CDS  gene_syn ATTBP3, ATTRB2, K9I9.15, K9I9_15, TBP3, TELOMERE REPEAT BINDING FACTOR 2, TELOMERE-BINDING PROTEIN 3, TRB2  gene TRB2  function Encodes a telomeric DNA binding protein. In vitro, the protein preferentially binds double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function double-stranded telomeric DNA binding|GO:0003691|15060584|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein homodimerization activity|GO:0042803|15060584|IPI  go_function single-stranded telomeric DNA binding|GO:0043047|15060584|IDA  product TRB2; DNA binding / double-stranded telomeric DNA binding / protein homodimerization/ single-stranded telomeric DNA binding / transcription factor  note TRB2; FUNCTIONS IN: single-stranded telomeric DNA binding, transcription factor activity, protein homodimerization activity, DNA binding, double-stranded telomeric DNA binding; INVOLVED IN: in 8 processes; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Histone H1/H5 (InterPro:IPR005818), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: TRB3 (TELOMERE REPEAT BINDING FACTOR 3); DNA binding / double-stranded telomeric DNA binding / protein homodimerization/ single-stranded telomeric DNA binding / transcription factor (TAIR:AT3G49850.1); Has 574 Blast hits to 574 proteins in 109 species: Archae - 0; Bacteria - 2; Metazoa - 116; Fungi - 64; Plants - 332; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT5G67580.1p  transcript_id AT5G67580.1  protein_id AT5G67580.1p  transcript_id AT5G67580.1  
At5g67580	chr5:026956924	0.0	C/26956924-26957073,26956626-26956846,26956457-26956541,26956300-26956383,26955843-26956202	AT5G67580.2  CDS  gene_syn ATTBP3, ATTRB2, K9I9.15, K9I9_15, TBP3, TELOMERE REPEAT BINDING FACTOR 2, TELOMERE-BINDING PROTEIN 3, TRB2  gene TRB2  function Encodes a telomeric DNA binding protein. In vitro, the protein preferentially binds double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function double-stranded telomeric DNA binding|GO:0003691|15060584|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein homodimerization activity|GO:0042803|15060584|IPI  go_function single-stranded telomeric DNA binding|GO:0043047|15060584|IDA  product TRB2; DNA binding / double-stranded telomeric DNA binding / protein homodimerization/ single-stranded telomeric DNA binding / transcription factor  note TRB2; FUNCTIONS IN: single-stranded telomeric DNA binding, transcription factor activity, protein homodimerization activity, DNA binding, double-stranded telomeric DNA binding; INVOLVED IN: in 8 processes; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Histone H1/H5 (InterPro:IPR005818), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: TRB3 (TELOMERE REPEAT BINDING FACTOR 3); DNA binding / double-stranded telomeric DNA binding / protein homodimerization/ single-stranded telomeric DNA binding / transcription factor (TAIR:AT3G49850.1); Has 574 Blast hits to 574 proteins in 109 species: Archae - 0; Bacteria - 2; Metazoa - 116; Fungi - 64; Plants - 332; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT5G67580.2p  transcript_id AT5G67580.2  protein_id AT5G67580.2p  transcript_id AT5G67580.2  
At5g67590	chr5:026958073	0.0	W/26958073-26958231,26958379-26958467,26958652-26958781,26958963-26958992,26959300-26959356	AT5G67590.1  CDS  gene_syn FRO1, FROSTBITE1, K9I9.16, K9I9_16  gene FRO1  function Mutant leaves have a reduced capacity for cold acclimation, appear water-soaked, leak electrolytes, and accumulate reactive oxygen species constitutively. Encode a protein with high similarity to the 18-kD Fe-S subunit of complex I (NADH dehydrogenase, EC 1.6.5.3) in the mitochondrial electron transfer chain.  go_component mitochondrion|GO:0005739|12084824|IDA  go_component mitochondrion|GO:0005739|12837548|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process response to osmotic stress|GO:0006970|12084824|IMP  go_process cold acclimation|GO:0009631|12084824|IMP  go_function NADH dehydrogenase (ubiquinone) activity|GO:0008137|12084824|ISS  product FRO1 (FROSTBITE1); NADH dehydrogenase (ubiquinone)  note FROSTBITE1 (FRO1); FUNCTIONS IN: NADH dehydrogenase (ubiquinone) activity; INVOLVED IN: cold acclimation, response to osmotic stress; LOCATED IN: mitochondrion, respiratory chain complex I; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ETC complex I subunit conserved region (InterPro:IPR006885); Has 1429 Blast hits to 1429 proteins in 234 species: Archae - 0; Bacteria - 263; Metazoa - 112; Fungi - 67; Plants - 34; Viruses - 0; Other Eukaryotes - 953 (source: NCBI BLink).  protein_id AT5G67590.1p  transcript_id AT5G67590.1  protein_id AT5G67590.1p  transcript_id AT5G67590.1  
At5g67600	chr5:026960181	0.0	C/26960181-26960226,26959937-26960093,26959754-26959799	AT5G67600.1  CDS  gene_syn K9I9.17, K9I9_17  go_component plasma membrane|GO:0005886|17317660|IDA  product unknown protein  note unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 2474 Blast hits to 1458 proteins in 244 species: Archae - 0; Bacteria - 299; Metazoa - 816; Fungi - 328; Plants - 498; Viruses - 1; Other Eukaryotes - 532 (source: NCBI BLink).  protein_id AT5G67600.1p  transcript_id AT5G67600.1  protein_id AT5G67600.1p  transcript_id AT5G67600.1  
At5g67610	chr5:026963509	0.0	C/26963509-26963614,26963122-26963335,26962863-26963020,26962648-26962793,26962503-26962562,26962314-26962406,26962025-26962186,26961841-26961947,26961571-26961719,26961224-26961489	AT5G67610.1  CDS  gene_syn K9I9.18, K9I9_18  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: guard cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49840.1); Has 98 Blast hits to 98 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G67610.1p  transcript_id AT5G67610.1  protein_id AT5G67610.1p  transcript_id AT5G67610.1  
At5g67610	chr5:026963509	0.0	C/26963509-26963614,26963122-26963371,26962863-26963020,26962648-26962793,26962503-26962562,26962314-26962406,26962025-26962186,26961841-26961947,26961571-26961719,26961224-26961489	AT5G67610.2  CDS  gene_syn K9I9.18, K9I9_18  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: guard cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49840.1); Has 98 Blast hits to 98 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G67610.2p  transcript_id AT5G67610.2  protein_id AT5G67610.2p  transcript_id AT5G67610.2  
At5g67620	chr5:026965468	0.0	C/26965468-26965720,26965198-26965379,26964891-26965004	AT5G67620.1  CDS  gene_syn K9I9.19, K9I9_19  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component microtubule|GO:0005874|15469496|IDA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: microtubule; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62900.1); Has 83 Blast hits to 83 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT5G67620.1p  transcript_id AT5G67620.1  protein_id AT5G67620.1p  transcript_id AT5G67620.1  
At5g67630	chr5:026968558	0.0	C/26968558-26969306,26967535-26968195	AT5G67630.1  CDS  gene_syn K9I9.20, K9I9_20  go_component nucleolus|GO:0005730|15496452|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function DNA helicase activity|GO:0003678||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function DNA helicase activity|GO:0003678||ISS  product DNA helicase, putative  note DNA helicase, putative; FUNCTIONS IN: DNA helicase activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; LOCATED IN: nucleolus, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TIP49, C-terminal (InterPro:IPR010339), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: DNA helicase-related (TAIR:AT3G49830.1); Has 1116 Blast hits to 1114 proteins in 319 species: Archae - 54; Bacteria - 288; Metazoa - 261; Fungi - 205; Plants - 64; Viruses - 0; Other Eukaryotes - 244 (source: NCBI BLink).  protein_id AT5G67630.1p  transcript_id AT5G67630.1  protein_id AT5G67630.1p  transcript_id AT5G67630.1  
At5g67640	chr5:026970444	0.0	C/26970444-26970548,26970312-26970360,26969915-26970241,26969546-26969670	AT5G67640.1  CDS  gene_syn K9I9.21, K9I9_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 10 Blast hits to 10 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT5G67640.1p  transcript_id AT5G67640.1  protein_id AT5G67640.1p  transcript_id AT5G67640.1  
AtCg00010	chrC:000000004	0.0	C/4-76	AtCg00010 tRNA  A chloroplast gene encoding a histidine-accepting tRNA
AtCg00020	chrC:000000383	0.0	C/383-1444	AtCg00020 CDS  Symbol: PSBA Encodes chlorophyll binding protein D1, a part of the photosystem II reaction center core chrC:383-1444 REVERSE Aliases: PSBA
AtCg00030	chrC:000001717	0.0	C/1717-1751,4311-4347	AtCg00030 tRNA  tRNA-Lys 
AtCg00040	chrC:000002056	0.0	C/2056-3636	AtCg00040 CDS  Symbol: MATK Encodes a maturase located in the trnK intron in the chloroplast genome. chrC:2056-3636 REVERSE Aliases: MATK
AtCg00050	chrC:000005084	0.0	C/5084-5283,6149-6188	AtCg00050 CDS  Symbol: RPS16 Homologous to the bacterial ribosomal protein S16 chrC:5084-6188 REVERSE Aliases: RPS16
AtCg00060	chrC:000006616	0.0	C/6616-6687	AtCg00060 tRNA  tRNA-Gln
AtCg00070	chrC:000007017	0.0	W/7017-7202	AtCg00070 CDS  Symbol: PSBK PSII K protein chrC:7017-7202 FORWARD Aliases: PSBK
AtCg00080	chrC:000007583	0.0	W/7583-7693	AtCg00080 CDS  Symbol: PSBI PSII I protein chrC:7583-7693 FORWARD Aliases: PSBI
AtCg00090	chrC:000007785	0.0	W/7785-7872	AtCg00090 tRNA  tRNA-Ser 
AtCg00100	chrC:000008646	0.0	W/8646-8668,9383-9431	AtCg00100 tRNA  tRNA-Gly 
AtCg00110	chrC:000009590	0.0	W/9590-9661	AtCg00110 tRNA  tRNA-Arg
AtCg00120	chrC:000009938	0.0	C/9938-11461	AtCg00120 CDS  Symbol: ATPA ATPase alpha subunit chrC:9938-11461 REVERSE Aliases: ATPA
AtCg00130	chrC:000011529	0.0	C/11529-11938,12654-12798	AtCg00130 CDS  Symbol: ATPF ATPase F subunit. chrC:11529-12798 REVERSE Aliases: ATPF
AtCg00140	chrC:000013262	0.0	C/13262-13507	AtCg00140 CDS  Symbol: ATPH ATPase III subunit chrC:13262-13507 REVERSE Aliases: ATPH
AtCg00150	chrC:000014021	0.0	C/14021-14770	AtCg00150 CDS  Symbol: ATPI ATPase a subunit chrC:14021-14770 REVERSE Aliases: ATPI
AtCg00160	chrC:000015013	0.0	C/15013-15723	AtCg00160 CDS  Symbol: RPS2 Chloroplast ribosomal protein S2 chrC:15013-15723 REVERSE Aliases: RPS2
AtCg00170	chrC:000015938	0.0	C/15938-20068	AtCg00170 CDS  Symbol: RPOC2 RNA polymerase beta  subunit-2 chrC:15938-20068 REVERSE Aliases: RPOC2
AtCg00180	chrC:000020251	0.0	C/20251-21861,22653-23084	AtCg00180 CDS  Symbol: RPO RNA polymerase beta  subunit chrC:20251-23084 REVERSE Aliases: RPOC1
AtCg00190	chrC:000023111	0.0	C/23111-26329	AtCg00190 CDS  Symbol: RPOB Chloroplast DNA-dependent RNA polymerase B subunit. chrC:23111-26329 REVERSE Aliases: RPOB
AtCg00200	chrC:000027373	0.0	W/27373-27443	AtCg00200 tRNA  a chloroplast-encoded tRNA for cysteine
AtCg00210	chrC:000028089	0.0	W/28089-28178	AtCg00210 CDS  Symbol: YCF6 hypothetical protein chrC:28089-28178 FORWARD Aliases: YCF6
AtCg00220	chrC:000028707	0.0	C/28707-28811	AtCg00220 CDS  Symbol: PSBM PSII low MW protein chrC:28707-28811 REVERSE Aliases: PSBM
AtCg00230	chrC:000029801	0.0	C/29801-29874	AtCg00230 tRNA  tRNA-Asp
AtCg00240	chrC:000030323	0.0	C/30323-30406	AtCg00240 tRNA  tRNA-Tyr
AtCg00250	chrC:000030466	0.0	C/30466-30538	AtCg00250 tRNA  encodes a UUC tRNA whose expression is regulated by SIG2
AtCg00260	chrC:000031369	0.0	W/31369-31440	AtCg00260 tRNA  tRNA-Thr 
AtCg00270	chrC:000032711	0.0	W/32711-33772	AtCg00270 CDS  Symbol: PSBD PSII D2 protein chrC:32711-33772 FORWARD Aliases: PSBD
AtCg00280	chrC:000033720	0.0	W/33720-35141	AtCg00280 CDS  Symbol: PSBC chloroplast gene encoding a CP43 subunit of the photosystem II reaction center. promoter contains a blue-light responsive element. chrC:33720-35141 FORWARD Aliases: PSBC
AtCg00290	chrC:000035312	0.0	W/35312-35403	AtCg00290 tRNA  tRNA-Ser 
AtCg00300	chrC:000035751	0.0	W/35751-35939	AtCg00300 CDS  Symbol: YCF9 encodes PsbZ, which is a subunit of photosystem II. In Chlamydomonas, this protein has been shown to be essential in the interaction between PS II and the light harvesting complex II. chrC:35751-35939 FORWARD Aliases: YCF9
AtCg00310	chrC:000036490	0.0	W/36490-36560	AtCg00310 tRNA  tRNA-Gly 
AtCg00320	chrC:000036704	0.0	C/36704-36777	AtCg00320 tRNA  tRNA-Phe
AtCg00330	chrC:000036938	0.0	C/36938-37240	AtCg00330 CDS  Symbol: RPS14 30S chloroplast ribosomal protein S14 chrC:36938-37240 REVERSE Aliases: RPS14
AtCg00340	chrC:000037375	0.0	C/37375-39579	AtCg00340 CDS  Symbol: PSAB Encodes the D1 subunit of photosystem I and II reaction centers. chrC:37375-39579 REVERSE Aliases: PSAB
AtCg00350	chrC:000039605	0.0	C/39605-41857	AtCg00350 CDS  Symbol: PSAA Encodes psaA protein comprising the reaction center for photosystem I along with psaB protein; hydrophobic protein encoded by the chloroplast genome. chrC:39605-41857 REVERSE Aliases: PSAA
AtCg00360	chrC:000042584	0.0	C/42584-42736,43524-43751	AtCg00360 CDS  Symbol: YCF3 hypothetical protein chrC:42584-43751 REVERSE Aliases: YCF3
AtCg00370	chrC:000044827	0.0	W/44827-44913	AtCg00370 tRNA  tRNA-Ser 
AtCg00380	chrC:000045223	0.0	C/45223-45828	AtCg00380 CDS  Symbol: RPS4 Chloroplast encoded ribosomal protein S4 chrC:45223-45828 REVERSE Aliases: RPS4
AtCg00390	chrC:000046213	0.0	C/46213-46285	AtCg00390 tRNA  tRNA-Thr
AtCg00400	chrC:000046894	0.0	W/46894-46928,47441-47490	AtCg00400 tRNA  tRNA-Leu 
AtCg00410	chrC:000048175	0.0	W/48175-48247	AtCg00410 tRNA  chloroplast TRNF
AtCg00420	chrC:000048677	0.0	C/48677-49153	AtCg00420 CDS  Symbol: NDHJ NADH dehydrogenase subunit chrC:48677-49153 REVERSE Aliases: NDHJ
AtCg00430	chrC:000049257	0.0	C/49257-49934	AtCg00430 CDS  Symbol: PSBG photosystem II G protein chrC:49257-49934 REVERSE Aliases: PSBG
AtCg00440	chrC:000050001	0.0	C/50001-50363	AtCg00440 CDS  Symbol: NDHC Encodes NADH dehydrogenase D3 subunit of the chloroplast NAD(P)H dehydrogenase complex chrC:50001-50363 REVERSE Aliases: NDHC
AtCg00450	chrC:000051199	0.0	C/51199-51233,51833-51871	AtCg00450 tRNA  tRNA-Val 
AtCg00460	chrC:000052056	0.0	W/52056-52128	AtCg00460 tRNA  Chloroplast encoded tRNA-Met gene
AtCg00470	chrC:000052265	0.0	C/52265-52663	AtCg00470 CDS  Symbol: ATPE ATPase epsilon subunit chrC:52265-52663 REVERSE Aliases: ATPE
AtCg00480	chrC:000052660	0.0	C/52660-54156	AtCg00480 CDS  Symbol: ATPB chloroplast-encoded gene for beta subunit of ATP synthase chrC:52660-54156 REVERSE Aliases: ATPB
AtCg00490	chrC:000054958	0.0	W/54958-56397	AtCg00490 CDS  Symbol: RBCL large subunit of RUBISCO. chrC:54958-56397 FORWARD Aliases: RBCL
AtCg00500	chrC:000057075	0.0	W/57075-58541	AtCg00500 CDS  Symbol: ACCD carboxytransferase beta subunit chrC:57075-58541 FORWARD Aliases: ACCD
AtCg00510	chrC:000059247	0.0	W/59247-59360	AtCg00510 CDS  Symbol: PSAI PSI I protein chrC:59247-59360 FORWARD Aliases: PSAI
AtCg00520	chrC:000059772	0.0	W/59772-60326	AtCg00520 CDS  Symbol: YCF4 hypothetical protein chrC:59772-60326 FORWARD Aliases: YCF4
AtCg00530	chrC:000060741	0.0	W/60741-61430	AtCg00530 CDS  Symbol: YCF10 hypothetical protein chrC:60741-61430 FORWARD Aliases: YCF10
AtCg00540	chrC:000061657	0.0	W/61657-62619	AtCg00540 CDS  Symbol: PETA Encodes cytochrome f apoprotein; involved in photosynthetic electron transport chain; encoded by the chloroplast genome and is transcriptionally repressed by a nuclear gene HCF2. chrC:61657-62619 FORWARD Aliases: PETA
AtCg00550	chrC:000063538	0.0	C/63538-63660	AtCg00550 CDS  Symbol: PSBJ PSII component chrC:63538-63660 REVERSE Aliases: PSBJ
AtCg00560	chrC:000063804	0.0	C/63804-63920	AtCg00560 CDS  Symbol: PSBL PSII L protein chrC:63804-63920 REVERSE Aliases: PSBL
AtCg00570	chrC:000063942	0.0	C/63942-64061	AtCg00570 CDS  Symbol: PSBF PSII cytochrome b559 chrC:63942-64061 REVERSE Aliases: PSBF
AtCg00580	chrC:000064071	0.0	C/64071-64322	AtCg00580 CDS  Symbol: PSBE PSII cytochrome b559. There have been many speculations about the function of Cyt b559, but the most favored at present is that it plays a protective role by acting as an electron acceptor or electron donor under conditions when electron flow through PSII is not optimized. chrC:64071-64322 REVERSE Aliases: PSBE
AtCg00590	chrC:000065712	0.0	W/65712-65807	AtCg00590 CDS  Symbol: ORF hypothetical protein chrC:65712-65807 FORWARD Aliases: ORF31
AtCg00600	chrC:000065998	0.0	W/65998-66111	AtCg00600 CDS  Symbol: PETG Cytochrome b6-f complex, subunit V. Disruption of homologous gene in Chlamydomonas results in disruption of cytochrome b6-f complex. chrC:65998-66111 FORWARD Aliases: PETG
AtCg00610	chrC:000066229	0.0	C/66229-66302	AtCg00610 tRNA  tRNA-Trp
AtCg00620	chrC:000066490	0.0	C/66490-66563	AtCg00620 tRNA  tRNA-Pro
AtCg00630	chrC:000066929	0.0	W/66929-67063	AtCg00630 CDS  Symbol: PSAJ PSI J protein chrC:66929-67063 FORWARD Aliases: PSAJ
AtCg00640	chrC:000067488	0.0	W/67488-67688	AtCg00640 CDS  Symbol: RPL33 encodes a chloroplast ribosomal protein L33, a constituent of the large subunit of the ribosomal complex chrC:67488-67688 FORWARD Aliases: RPL33
AtCg00650	chrC:000067917	0.0	W/67917-68222	AtCg00650 CDS  Symbol: RPS18 chloroplast-encoded ribosomal protein S18 chrC:67917-68222 FORWARD Aliases: RPS18
AtCg00660	chrC:000068512	0.0	C/68512-68865	AtCg00660 CDS  Symbol: RPL20 encodes a chloroplast ribosomal protein L20, a constituent of the large subunit of the ribosomal complex chrC:68512-68865 REVERSE Aliases: RPL20
AtCg00065	chrC:000069611	0.0	C/69611-69724	AtCg00065 CDS  Symbol: RPS12A chloroplast gene encoding ribosomal protein s12. The gene is located in three distinct loci on the chloroplast genome and is transpliced to make one transcript. chrC:69611-69724 REVERSE Aliases: RPS12A
AtCg00670	chrC:000069910	0.0	C/69910-70137,70653-70944,71812-71882	AtCg00670 CDS  Symbol: CLP Encodes the only ClpP (caseinolytic protease) encoded within the plastid genome. Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). Part of the 350 kDa chloroplast Clp complex. The name reflects nomenclature described in Adam et. al (2001). chrC:69910-71882 REVERSE Aliases: CLPP1
AtCg00680	chrC:000072371	0.0	W/72371-73897	AtCg00680 CDS  Symbol: PSBB encodes for CP47, subunit of the photosystem II reaction center. chrC:72371-73897 FORWARD Aliases: PSBB
AtCg00690	chrC:000074082	0.0	W/74082-74183	AtCg00690 CDS  Symbol: PSBT photosystem II protein T. Encodes the chlorophyll a apoprotein CP47. chrC:74082-74183 FORWARD Aliases: PSBT
AtCg00700	chrC:000074249	0.0	C/74249-74380	AtCg00700 CDS  Symbol: PSBN PSII low MW protein chrC:74249-74380 REVERSE Aliases: PSBN
AtCg00710	chrC:000074485	0.0	W/74485-74706	AtCg00710 CDS  Symbol: PSBH Encodes a 8 kD phosphoprotein that is a component of the photosystem II oxygen evolving core. Its exact molecular function has not been determined but it may play a role in mediating electron transfer between the secondary quinone acceptors, QA and QB, associated with the acceptor side of PSII. chrC:74485-74706 FORWARD Aliases: PSBH
AtCg00720	chrC:000074841	0.0	W/74841-74846,75651-76292	AtCg00720 CDS  Symbol: PETB Encodes the cytochrome b(6) subunit of the cytochrome b6f complex. chrC:74841-76292 FORWARD Aliases: PETB
AtCg00730	chrC:000076481	0.0	W/76481-76488,77198-77672	AtCg00730 CDS  cytochrome b6/f complex subunit IV 
AtCg00740	chrC:000077901	0.0	C/77901-78890	AtCg00740 CDS  Symbol: RPOA RNA polymerase alpha subunit chrC:77901-78890 REVERSE Aliases: RPOA
AtCg00750	chrC:000078960	0.0	C/78960-79376	AtCg00750 CDS  Symbol: RPS 30S chloroplast ribosomal protein S chrC:78960-79376 REVERSE Aliases: RPS11
AtCg00760	chrC:000079489	0.0	C/79489-79602	AtCg00760 CDS  Symbol: RPL36 encodes a chloroplast ribosomal protein L36, a constituent of the large subunit of the ribosomal complex chrC:79489-79602 REVERSE Aliases: RPL36
AtCg00770	chrC:000080068	0.0	C/80068-80472	AtCg00770 CDS  Symbol: RPS8 chloroplast 30S ribosomal protein S8 chrC:80068-80472 REVERSE Aliases: RPS8
AtCg00780	chrC:000080696	0.0	C/80696-81064	AtCg00780 CDS  Symbol: RPL14 encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex chrC:80696-81064 REVERSE Aliases: RPL14
AtCg00790	chrC:000081189	0.0	C/81189-81587,82644-82652	AtCg00790 CDS  ribosomal protein L16 
AtCg00800	chrC:000082826	0.0	C/82826-83482	AtCg00800 CDS  Symbol: RPS3 encodes a chloroplast ribosomal protein S3, a constituent of the small subunit of the ribosomal complex chrC:82826-83482 REVERSE Aliases: RPS3
AtCg00810	chrC:000083467	0.0	C/83467-83949	AtCg00810 CDS  Symbol: RPL22 encodes a chloroplast ribosomal protein L22, a constituent of the large subunit of the ribosomal complex chrC:83467-83949 REVERSE Aliases: RPL22
AtCg00820	chrC:000084005	0.0	C/84005-84283	AtCg00820 CDS  Symbol: RPS19 Encodes a 6.8-kDa protein of the small ribosomal subunit. chrC:84005-84283 REVERSE Aliases: RPS19
AtCg00830	chrC:000084337	0.0	C/84337-84771,85454-85843	AtCg00830 CDS  Symbol: RPL2 encodes a chloroplast ribosomal protein L2, a constituent of the large subunit of the ribosomal complex chrC:84337-85843 REVERSE Aliases: RPL2.1
AtCg00840	chrC:000085862	0.0	C/85862-86143	AtCg00840 CDS  Symbol: RPL23 One of two chloroplast genes that encode chloroplast ribosomal protein L23, a constituent of the large subunit of the ribosomal complex chrC:85862-86143 REVERSE Aliases: RPL23.1
AtCg00850	chrC:000086312	0.0	C/86312-86385	AtCg00850 tRNA  tRNA-Ile 
AtCg00860	chrC:000086474	0.0	W/86474-93358	AtCg00860 CDS  Symbol: YCF2 hypothetical protein chrC:86474-93358 FORWARD Aliases: YCF2.1
AtCg00870	chrC:000093495	0.0	W/93495-93728	AtCg00870 CDS  Symbol: ORF77 hypothetical protein chrC:93495-93728 FORWARD Aliases: ORF77.1
AtCg00880	chrC:000094276	0.0	C/94276-94356	AtCg00880 tRNA  tRNA-Leu 
AtCg00890	chrC:000094941	0.0	C/94941-95702,96388-96795	AtCg00890 CDS  Symbol: NDHB NADH dehydrogenase ND2 chrC:94941-96795 REVERSE Aliases: NDHB.1
AtCg00900	chrC:000097478	0.0	C/97478-97945	AtCg00900 CDS  Symbol: RPS7 encodes a chloroplast ribosomal protein S7, a constituent of the small subunit of the ribosomal complex chrC:97478-97945 REVERSE Aliases: RPS7.1
AtCg00905	chrC:000097999	0.0	C/97999-98024,98562-98793	AtCg00905 CDS  Symbol: RPS12C chloroplast gene encoding ribosomal protein s12. The gene is located in three distinct loci on the chloroplast genome and is transpliced to make one transcript. chrC:97999-98793 REVERSE Aliases: RPS12C
AtCg00910	chrC:000100709	0.0	W/100709-100780	AtCg00910 tRNA  tRNA-Val 
AtCg00920	chrC:000101012	0.0	W/101012-102502	AtCg00920 rRNA  16S ribosomal RNA 
AtCg00930	chrC:000102801	0.0	W/102801-102837,103567-103601	AtCg00930 tRNA  tRNA-Ile 
AtCg00940	chrC:000103665	0.0	W/103665-103702,104504-104538	AtCg00940 tRNA  tRNA-Ala 
AtCg00950	chrC:000104691	0.0	W/104691-107500	AtCg00950 rRNA  23S ribosomal RNA 
AtCg00960	chrC:000107599	0.0	W/107599-107701	AtCg00960 rRNA  4.5S ribosomal RNA 5S ribosomal RNA
AtCg00970	chrC:000107949	0.0	W/107949-108069	AtCg00970 rRNA
AtCg00980	chrC:000108302	0.0	W/108302-108375	AtCg00980 tRNA  tRNA-Arg 
AtCg00990	chrC:000109013	0.0	C/109013-109084	AtCg00990 tRNA  tRNA-Asn 
AtCg01000	chrC:000109405	0.0	W/109405-110436	AtCg01000 CDS  Symbol: YCF1 hypothetical protein chrC:109405-110436 FORWARD Aliases: YCF1.1
AtCg01010	chrC:000110398	0.0	C/110398-112638	AtCg01010 CDS  Symbol: NDHF Chloroplast encoded NADH dehydrogenase unit. chrC:110398-112638 REVERSE Aliases: NDHF
AtCg01020	chrC:000113449	0.0	W/113449-113607	AtCg01020 CDS  Symbol: RPL32 encodes a chloroplast ribosomal protein L32, a constituent of the large subunit of the ribosomal complex chrC:113449-113607 FORWARD Aliases: RPL32
AtCg01030	chrC:000114270	0.0	W/114270-114349	AtCg01030 tRNA  tRNA-Leu 
AtCg01040	chrC:000114461	0.0	W/114461-115447	AtCg01040 CDS  Symbol: YCF5 hypothetical protein chrC:114461-115447 FORWARD Aliases: YCF5
AtCg01050	chrC:000115665	0.0	C/115665-117185	AtCg01050 CDS  Symbol: NDHD Represents a plastid-encoded subunit of a NAD(P)H dehydrogenase complex. Its mRNA is edited at four positions. Translation data is not available for this gene. chrC:115665-117185 REVERSE Aliases: NDHD
AtCg01060	chrC:000117318	0.0	C/117318-117563	AtCg01060 CDS  Symbol: PSAC Encodes the PsaC subunit of photosystem I. chrC:117318-117563 REVERSE Aliases: PSAC
AtCg01070	chrC:000117804	0.0	C/117804-118109	AtCg01070 CDS  Symbol: NDHE NADH dehydrogenase ND4L chrC:117804-118109 REVERSE Aliases: NDHE
AtCg01080	chrC:000118377	0.0	C/118377-118907	AtCg01080 CDS  Symbol: NDHG NADH dehydrogenase ND6 chrC:118377-118907 REVERSE Aliases: NDHG
AtCg01090	chrC:000119244	0.0	C/119244-119762	AtCg01090 CDS  Symbol: NDHI Encodes subunit of the chloroplast NAD(P)H dehydrogenase complex chrC:119244-119762 REVERSE Aliases: NDHI
AtCg01100	chrC:000119847	0.0	C/119847-120376,121457-122009	AtCg01100 CDS  Symbol: NDHA NADH dehydrogenase N chrC:119847-122009 REVERSE Aliases: NDHA
AtCg01110	chrC:000122011	0.0	C/122011-123192	AtCg01110 CDS  Symbol: NDHH plastid NAD(P)H dehydrogenase subunit H 49KDa protein chrC:122011-123192 REVERSE Aliases: NDHH
AtCg01120	chrC:000123296	0.0	C/123296-123562	AtCg01120 CDS  Symbol: RPS15 encodes a chloroplast ribosomal protein S15, a constituent of the small subunit of the ribosomal complex chrC:123296-123562 REVERSE Aliases: RPS15
AtCg01130	chrC:000123884	0.0	C/123884-129244	AtCg01130 CDS  Symbol: YCF1.2 hypothetical protein chrC:123884-129244 REVERSE Aliases: YCF1.2
AtCg01140	chrC:000129565	0.0	W/129565-129636	AtCg01140 tRNA  tRNA-Asn
AtCg01150	chrC:000130274	0.0	C/130274-130347	AtCg01150 tRNA  tRNA-Arg 
AtCg01160	chrC:000130580	0.0	C/130580-130700	AtCg01160 rRNA
AtCg01170	chrC:000130948	0.0	C/130948-131050	AtCg01170 rRNA  5S ribosomal RNA 4.5S ribosomal RNA 23S ribosomal RNA 
AtCg01180	chrC:000131149	0.0	C/131149-133958	AtCg01180 rRNA
AtCg01190	chrC:000134111	0.0	C/134111-134145,134947-134984	AtCg01190 tRNA  tRNA-Ala 
AtCg01200	chrC:000135048	0.0	C/135048-135082,135812-135848	AtCg01200 tRNA  tRNA-Ile 
AtCg01210	chrC:000136147	0.0	C/136147-137637	AtCg01210 rRNA  16S ribosomal RNA 
AtCg01220	chrC:000137869	0.0	C/137869-137940	AtCg01220 tRNA  tRNA-Val 
AtCg01230	chrC:000139856	0.0	W/139856-140087,140625-140650	AtCg01230 CDS  Symbol: RPS12B chloroplast gene encoding ribosomal protein s12. The gene is located in three distinct loci on the chloroplast genome and is transpliced to make one transcript. chrC:139856-140650 FORWARD Aliases: RPS12B
AtCg01240	chrC:000140704	0.0	W/140704-141171	AtCg01240 CDS  Symbol: RPS7.2 30S chloroplast ribosomal protein S7 chrC:140704-141171 FORWARD Aliases: RPS7.2
AtCg01250	chrC:000141854	0.0	W/141854-142261,142947-143708	AtCg01250 CDS  Symbol: NDHB.2 NADH dehydrogenase ND2 chrC:141854-143708 FORWARD Aliases: NDHB.2
AtCg01260	chrC:000144293	0.0	W/144293-144373	AtCg01260 tRNA  tRNA-Leu 
AtCg01270	chrC:000144921	0.0	C/144921-145154	AtCg01270 CDS  Symbol: ORF77.2 hypothetical protein chrC:144921-145154 REVERSE Aliases: ORF77.2
AtCg01280	chrC:000145291	0.0	C/145291-152175	AtCg01280 CDS  Symbol: YCF2.2 hypothetical protein chrC:145291-152175 REVERSE Aliases: YCF2.2
AtCg01290	chrC:000152264	0.0	W/152264-152337	AtCg01290 tRNA  tRNA-Ile 
AtCg01300	chrC:000152506	0.0	W/152506-152787	AtCg01300 CDS  Symbol: RPL23.2 One of two chloroplast genes that encode chloroplast ribosomal protein L23, a constituent of the large subunit of the ribosomal complex chrC:152506-152787 FORWARD Aliases: RPL23.2
AtCg01310	chrC:000152806	0.0	W/152806-153195,153878-154312	AtCg01310 CDS  Symbol: RPL2.2 encodes a chloroplast ribosomal protein L2, a constituent of the large subunit of the ribosomal complex chrC:152806-154312 FORWARD Aliases: RPL2.2
AtMg00010	chrM:000000273	0.0	C/273-734	AtMg00010 CDS  Symbol: ORF153A hypothetical protein chrM:273-734 REVERSE Aliases: ORF153A
AtMg00020	chrM:000008848	0.0	C/8848-11415	AtMg00020 rRNA
AtMg00030	chrM:000011918	0.0	W/11918-12241	AtMg00030 CDS  Symbol: ORF107A hypothetical protein chrM:11918-12241 FORWARD Aliases: ORF107A
AtMg00040	chrM:000016844	0.0	C/16844-17791	AtMg00040 CDS  Symbol: ORF315 hypothetical protein chrM:16844-17791 REVERSE Aliases: ORF315
AtMg00050	chrM:000016856	0.0	W/16856-17251	AtMg00050 CDS  Symbol: ORF1 hypothetical protein chrM:16856-17251 FORWARD Aliases: ORF131
AtMg00060	chrM:000020571	0.0	C/20571-20717,21692-22086	AtMg00060 CDS  Symbol: NAD5C Mitochondrial NADH dehydrogenase subunit 5. The gene is trans-spliced from the three different pre-cursors, NAD5a, NAD5b and NAD5c. chrM:20571-22086 REVERSE Aliases: NAD5C
AtMg00070	chrM:000023663	0.0	C/23663-24235	AtMg00070 CDS  Symbol: NAD9 NADH dehydrogenase subunit 9 chrM:23663-24235 REVERSE Aliases: NAD9
AtMg00080	chrM:000025076	0.0	C/25076-25615	AtMg00080 CDS  Symbol: RPL16 encodes a mitochondrial ribosomal protein L16, which is a constituent of the large ribosomal subunit chrM:25076-25615 REVERSE Aliases: RPL16
AtMg00090	chrM:000025482	0.0	C/25482-27077,28659-28733	AtMg00090 CDS  Symbol: RPS3 ribosomal protein S3 chrM:25482-28733 REVERSE Aliases: RPS3
AtMg00100	chrM:000028898	0.0	C/28898-28970	AtMg00100 tRNA  tRNA-Lys
AtMg00110	chrM:000030463	0.0	W/30463-31083	AtMg00110 CDS  Symbol: CCB206 cytochrome c biogenesis orf206 chrM:30463-31083 FORWARD Aliases: CCB206
AtMg00120	chrM:000032041	0.0	C/32041-32472	AtMg00120 CDS  Symbol: ORF143 hypothetical protein chrM:32041-32472 REVERSE Aliases: ORF143
AtMg00130	chrM:000034190	0.0	W/34190-34555	AtMg00130 CDS  Symbol: ORF121A hypothetical protein chrM:34190-34555 FORWARD Aliases: ORF121A
AtMg00140	chrM:000034599	0.0	W/34599-35102	AtMg00140 CDS  Symbol: ORF167 hypothetical protein chrM:34599-35102 FORWARD Aliases: ORF167
AtMg00150	chrM:000035782	0.0	W/35782-36132	AtMg00150 CDS  Symbol: ORF116 hypothetical protein chrM:35782-36132 FORWARD Aliases: ORF116
AtMg00160	chrM:000040502	0.0	C/40502-40585,41930-42628	AtMg00160 CDS  Symbol: COX2 cytochrome c oxidase subunit 2 chrM:40502-42628 REVERSE Aliases: COX2
AtMg00170	chrM:000048113	0.0	W/48113-48532	AtMg00170 CDS  Symbol: ORF139A hypothetical protein chrM:48113-48532 FORWARD Aliases: ORF139A
AtMg00180	chrM:000051293	0.0	C/51293-51871,52832-53611	AtMg00180 CDS  Symbol: CCB452 cytochrome c biogenesis orf452 chrM:51293-53611 REVERSE Aliases: CCB452
AtMg00190	chrM:000053736	0.0	C/53736-53809	AtMg00190 tRNA  tRNA-Gly
AtMg00200	chrM:000055767	0.0	C/55767-56090	AtMg00200 CDS  Symbol: ORF107B hypothetical protein chrM:55767-56090 REVERSE Aliases: ORF107B
AtMg00210	chrM:000057774	0.0	W/57774-58331	AtMg00210 CDS  Symbol: RPL5 encodes a mitochondrial ribosomal protein L5, a constituent of the large subunit of the ribosomal complex chrM:57774-58331 FORWARD Aliases: RPL5
AtMg00220	chrM:000060235	0.0	W/60235-61416	AtMg00220 CDS  Symbol: COB Mitochondrial apocytochrome b (cob) gene encodes a subunit of the ubiquinol-cytochrome c oxidoreductase and is part of a 5 kb transcript. The transcript also contains a pseudogene for ribosomal protein S14 called RPS15 and a tRNA(Ser) gene. Both the Cob and RPS15 genes are edited in the transcript. chrM:60235-61416 FORWARD Aliases: COB
AtMg00230	chrM:000062349	0.0	W/62349-62433	AtMg00230 tRNA  tRNA-Ser
AtMg00240	chrM:000068918	0.0	C/68918-69253	AtMg00240 CDS  Symbol: ORF111A hypothetical protein chrM:68918-69253 REVERSE Aliases: ORF111A
AtMg00250	chrM:000071453	0.0	W/71453-71526	AtMg00250 tRNA
AtMg00260	chrM:000076132	0.0	W/76132-76437	AtMg00260 CDS  Symbol: ORF101A hypothetical protein chrM:76132-76437 FORWARD Aliases: ORF101A
AtMg00270	chrM:000076642	0.0	C/76642-77259	AtMg00270 CDS  Symbol: NAD6 NADH dehydrogenase subunit 6 chrM:76642-77259 REVERSE Aliases: NAD6
AtMg00280	chrM:000077819	0.0	C/77819-78151	AtMg00280 CDS  Symbol: ORF110A hypothetical protein chrM:77819-78151 REVERSE Aliases: ORF110A
AtMg00285	chrM:000079740	0.0	C/79740-80132,81113-81297	AtMg00285 CDS  Symbol: NAD2A encodes subunit of mitochondrial NAD(P)H dehydrogenase that is trans-spliced from two precursors, NAD2A and NAD2B. chrM:79740-81297 REVERSE Aliases: NAD2A
AtMg00290	chrM:000082028	0.0	C/82028-83116	AtMg00290 CDS  Symbol: RPS4 encodes a mitochondrial ribosomal protein S4, a constituent of the small subunit of the ribosomal complex chrM:82028-83116 REVERSE Aliases: RPS4
AtMg00300	chrM:000089617	0.0	C/89617-90054	AtMg00300 CDS  Symbol: ORF145A hypothetical protein chrM:89617-90054 REVERSE Aliases: ORF145A
AtMg00310	chrM:000090883	0.0	C/90883-91347	AtMg00310 CDS  Symbol: ORF154 hypothetical protein chrM:90883-91347 REVERSE Aliases: ORF154
AtMg00320	chrM:000091001	0.0	W/91001-91384	AtMg00320 CDS  Symbol: ORF127 hypothetical protein chrM:91001-91384 FORWARD Aliases: ORF127
AtMg00330	chrM:000103827	0.0	W/103827-103914	AtMg00330 tRNA  tRNA-Ser
AtMg00340	chrM:000104221	0.0	W/104221-104295	AtMg00340 tRNA  tRNA-Tyr
AtMg00350	chrM:000104457	0.0	W/104457-104531	AtMg00350 tRNA
AtMg00360	chrM:000104885	0.0	W/104885-104995	AtMg00360 tRNA
AtMg00370	chrM:000104954	0.0	C/104954-105553	AtMg00370 CDS  Symbol: ORF199 hypothetical protein chrM:104954-105553 REVERSE Aliases: ORF199
AtMg00380	chrM:000105887	0.0	W/105887-105948	AtMg00380 tRNA  tRNA-Asn
AtMg00390	chrM:000106797	0.0	W/106797-106879	AtMg00390 tRNA  tRNA-Tyr
AtMg00400	chrM:000110930	0.0	C/110930-111403	AtMg00400 CDS  Symbol: ORF157 hypothetical protein chrM:110930-111403 REVERSE Aliases: ORF157
AtMg00410	chrM:000111750	0.0	W/111750-112907	AtMg00410 CDS  Symbol: ATP6 ATPase subunit 6 chrM:111587-112907 FORWARD Aliases: ATP6-1
AtMg00420	chrM:000112953	0.0	W/112953-113039	AtMg00420 tRNA  hypothetical protein 
AtMg00430	chrM:000115431	0.0	W/115431-115751	AtMg00430 CDS
AtMg00440	chrM:000116296	0.0	W/116296-116754	AtMg00440 CDS
AtMg00450	chrM:000119381	0.0	C/119381-119701	AtMg00450 CDS  Symbol: ORF106B hypothetical protein chrM:119381-119701 REVERSE Aliases: ORF106B
AtMg00460	chrM:000127021	0.0	C/127021-127094	AtMg00460 tRNA  tRNA-Ile
AtMg00470	chrM:000127475	0.0	C/127475-127843	AtMg00470 CDS  Symbol: ORF122A hypothetical protein chrM:127475-127843 REVERSE Aliases: ORF122A
AtMg00480	chrM:000129909	0.0	W/129909-130385	AtMg00480 CDS  Symbol: ORFB Encodes the b subunit of the mitochondrial F(O) ATP synthase complex. chrM:129909-130385 FORWARD Aliases: ORFB
AtMg00490	chrM:000130817	0.0	W/130817-131140	AtMg00490 CDS  Symbol: ORF107C hypothetical protein chrM:130817-131140 FORWARD Aliases: ORF107C
AtMg00500	chrM:000130968	0.0	W/130968-131393	AtMg00500 CDS  Symbol: ORF1 hypothetical protein chrM:130968-131393 FORWARD Aliases: ORF141
AtMg00510	chrM:000132071	0.0	W/132071-132213,133177-133245,134309-134775,135829-136072,137892-138153	AtMg00510 CDS  Symbol: NAD7 NADH dehydrogenase subunit 7 chrM:132071-138153 FORWARD Aliases: NAD7
AtMg00513	chrM:000140724	0.0	C/140724-141939,142769-142998	AtMg00513 CDS  Symbol: NAD5A Mitochondrial NADH dehydrogenase subunit 5. The gene is trans-spliced from three different pre-cursors, NAD5a, NAD5b and NAD5c. chrM:140724-142998 REVERSE Aliases: NAD5A
AtMg00516	chrM:000143219	0.0	C/143219-143477,146990-147048	AtMg00516 CDS  Symbol: NAD1C Encodes subunit of mitochondrial NAD(P)H dehydrogenase that is trans-spliced from three precursors, NAD1A, NAD1B, and NAD1C. chrM:143219-147048 REVERSE Aliases: NAD1C
AtMg00520	chrM:000144294	0.0	C/144294-146312	AtMg00520 CDS  Symbol: MATR hypothetical protein chrM:144294-146312 REVERSE Aliases: MATR
AtMg00530	chrM:000147282	0.0	C/147282-147611	AtMg00530 CDS  Symbol: ORF109 hypothetical protein chrM:147282-147611 REVERSE Aliases: ORF109
AtMg00540	chrM:000150783	0.0	W/150783-151151	AtMg00540 CDS  Symbol: ORF102B hypothetical protein chrM:150783-151151 FORWARD Aliases: ORF102B
AtMg00550	chrM:000151265	0.0	C/151265-151747	AtMg00550 CDS  Symbol: ORF160 hypothetical protein chrM:151265-151747 REVERSE Aliases: ORF160
AtMg00560	chrM:000154744	0.0	W/154744-155660,157213-157345	AtMg00560 CDS  Symbol: RPL2 encodes a mitochondrial ribosomal protein L2, a constituent of the large subunit of the ribosomal complex chrM:154744-157345 FORWARD Aliases: RPL2
AtMg00570	chrM:000157491	0.0	W/157491-158351	AtMg00570 CDS  Symbol: ORFX encodes a protein of unknown function. The transcript has extensive RNA editing at the 3  end. Protein has orthologous in other plants and sequence is similar to E. coli ORFs orf154 and orf131, both of unknown function. So far, similar proteins are found only in plants and prokaryotes. chrM:157491-158351 FORWARD Aliases: ORFX
AtMg00580	chrM:000161693	0.0	W/161693-162153,163625-164139,167221-167642,169585-169674	AtMg00580 CDS  Symbol: NAD4 NADH dehydrogenase subunit 4 chrM:161693-169674 FORWARD Aliases: NAD4
AtMg00590	chrM:000169796	0.0	W/169796-170737	AtMg00590 CDS  Symbol: ORF313 hypothetical protein chrM:169796-170737 FORWARD Aliases: ORF313
AtMg00600	chrM:000174205	0.0	W/174205-174525	AtMg00600 CDS  Symbol: ORF106C hypothetical protein chrM:174205-174525 FORWARD Aliases: ORF106C
AtMg00610	chrM:000176542	0.0	C/176542-177027	AtMg00610 CDS  Symbol: ORF1 hypothetical protein chrM:176542-177027 REVERSE Aliases: ORF161
AtMg00620	chrM:000182278	0.0	W/182278-182697	AtMg00620 CDS  Symbol: ORF139B hypothetical protein chrM:182278-182697 FORWARD Aliases: ORF139B
AtMg00630	chrM:000183111	0.0	W/183111-183443	AtMg00630 CDS  Symbol: ORF110B hypothetical protein chrM:183111-183443 FORWARD Aliases: ORF110B
AtMg00640	chrM:000188084	0.0	C/188084-188662	AtMg00640 CDS  Symbol: ORF25 encodes a plant b subunit of mitochondrial ATP synthase based on structural similarity and the presence in the F(0) complex. chrM:188084-188662 REVERSE Aliases: ORF25
AtMg00650	chrM:000188929	0.0	C/188929-189231	AtMg00650 CDS  Symbol: NAD4L Encodes NADH dehydrogenase subunit 4L. chrM:188929-189231 REVERSE Aliases: NAD4L
AtMg00660	chrM:000190104	0.0	C/190104-190553	AtMg00660 CDS  Symbol: ORF149 hypothetical protein chrM:190104-190553 REVERSE Aliases: ORF149
AtMg00665	chrM:000190740	0.0	C/190740-190761	AtMg00665 CDS
AtMg00670	chrM:000191055	0.0	C/191055-191882	AtMg00670 CDS  Symbol: ORF275 hypothetical protein chrM:191055-191882 REVERSE Aliases: ORF275
AtMg00680	chrM:000201729	0.0	W/201729-202097	AtMg00680 CDS  Symbol: ORF122C hypothetical protein chrM:201729-202097 FORWARD Aliases: ORF122C
AtMg00690	chrM:000203588	0.0	C/203588-204310	AtMg00690 CDS  Symbol: ORF240A hypothetical protein chrM:203588-204310 REVERSE Aliases: ORF240A
AtMg00700	chrM:000204340	0.0	C/204340-204412	AtMg00700 tRNA  tRNA-Lys 
AtMg00710	chrM:000207553	0.0	C/207553-207915	AtMg00710 CDS  Symbol: ORF120 hypothetical protein chrM:207553-207915 REVERSE Aliases: ORF120
AtMg00720	chrM:000209499	0.0	W/209499-209822	AtMg00720 CDS  Symbol: ORF107D hypothetical protein chrM:209499-209822 FORWARD Aliases: ORF107D
AtMg00730	chrM:000218280	0.0	W/218280-219077	AtMg00730 CDS  Symbol: COX3 Encodes cytochrome c oxidase subunit 3. chrM:217631-219077 FORWARD Aliases: COX3
AtMg00740	chrM:000220471	0.0	C/220471-220773	AtMg00740 CDS  Symbol: ORF100A hypothetical protein chrM:220471-220773 REVERSE Aliases: ORF100A
AtMg00750	chrM:000220830	0.0	W/220830-221189	AtMg00750 CDS  Symbol: ORF119 hypothetical protein chrM:220830-221189 FORWARD Aliases: ORF119
AtMg00760	chrM:000221700	0.0	C/221700-222029	AtMg00760 CDS  Symbol: ORF109B hypothetical protein chrM:221700-222029 REVERSE Aliases: ORF109B
AtMg00770	chrM:000222687	0.0	C/222687-222989	AtMg00770 CDS  Symbol: ORF100B hypothetical protein chrM:222687-222989 REVERSE Aliases: ORF100B
AtMg00780	chrM:000227109	0.0	W/227109-227196	AtMg00780 tRNA  tRNA-Ser
AtMg00790	chrM:000227502	0.0	W/227502-227577	AtMg00790 tRNA  tRNA-Tyr
AtMg00800	chrM:000227615	0.0	W/227615-227686	AtMg00800 tRNA  tRNA-Glu
AtMg00810	chrM:000227709	0.0	C/227709-228431	AtMg00810 CDS  Symbol: ORF240B hypothetical protein chrM:227709-228431 REVERSE Aliases: ORF240B
AtMg00820	chrM:000228573	0.0	C/228573-229085	AtMg00820 CDS  Symbol: ORF170 hypothetical protein chrM:228573-229085 REVERSE Aliases: ORF170
AtMg00830	chrM:000231894	0.0	C/231894-233042	AtMg00830 CDS  Symbol: CCB382 cytochrome c biogenesis orf382 chrM:231894-233042 REVERSE Aliases: CCB382
AtMg00840	chrM:000234538	0.0	C/234538-234903	AtMg00840 CDS  Symbol: ORF121B hypothetical protein chrM:234538-234903 REVERSE Aliases: ORF121B
AtMg00850	chrM:000235338	0.0	W/235338-235661	AtMg00850 CDS  Symbol: ORF107E hypothetical protein chrM:235338-235661 FORWARD Aliases: ORF107E
AtMg00860	chrM:000235916	0.0	W/235916-236392	AtMg00860 CDS  Symbol: ORF158 hypothetical protein chrM:235916-236392 FORWARD Aliases: ORF158
AtMg00870	chrM:000236927	0.0	C/236927-237481	AtMg00870 CDS  Symbol: ORF184 hypothetical protein chrM:236927-237481 REVERSE Aliases: ORF184
AtMg00880	chrM:000237053	0.0	W/237053-237616	AtMg00880 CDS  Symbol: ORF187 hypothetical protein chrM:237053-237616 FORWARD Aliases: ORF187
AtMg00890	chrM:000239636	0.0	C/239636-239956	AtMg00890 CDS  hypothetical protein nad1 
AtMg00900	chrM:000239988	0.0	C/239988-240758	AtMg00900 CDS  Symbol: CCB256 cytochrome c biogenesis orf256 chrM:239988-240758 REVERSE Aliases: CCB256
AtMg00910	chrM:000241306	0.0	C/241306-241953	AtMg00910 CDS  Symbol: ORF215A hypothetical protein chrM:241306-241953 REVERSE Aliases: ORF215A
AtMg00920	chrM:000249272	0.0	C/249272-249919	AtMg00920 CDS  Symbol: ORF215B hypothetical protein chrM:249272-249919 REVERSE Aliases: ORF215B
AtMg00930	chrM:000250080	0.0	C/250080-250153	AtMg00930 tRNA  tRNA-Trp
AtMg00940	chrM:000251403	0.0	C/251403-251897	AtMg00940 CDS  Symbol: ORF164 hypothetical protein chrM:251403-251897 REVERSE Aliases: ORF164
AtMg00950	chrM:000254505	0.0	C/254505-254571	AtMg00950 tRNA  tRNA-Gln
AtMg00960	chrM:000256865	0.0	C/256865-257476	AtMg00960 CDS  Symbol: CCB203 cytochrome c biogenesis orf203 chrM:256865-257476 REVERSE Aliases: CCB203
AtMg00970	chrM:000258045	0.0	C/258045-258398	AtMg00970 CDS  Symbol: ORF117 hypothetical protein chrM:258045-258398 REVERSE Aliases: ORF117
AtMg00980	chrM:000260224	0.0	C/260224-260601	AtMg00980 CDS  Symbol: RPSL2 ribosomal protein L2 chrM:260224-260601 REVERSE Aliases: RPSL2
AtMg00990	chrM:000260647	0.0	C/260647-261006	AtMg00990 CDS  Symbol: NAD3 NADH dehydrogenase subunit 3 chrM:260647-261006 REVERSE Aliases: NAD3
AtMg01000	chrM:000260963	0.0	C/260963-261307	AtMg01000 CDS  Symbol: ORF114 hypothetical protein chrM:260963-261307 REVERSE Aliases: ORF114
AtMg01010	chrM:000261105	0.0	C/261105-261461	AtMg01010 CDS  Symbol: ORF118 hypothetical protein chrM:261105-261461 REVERSE Aliases: ORF118
AtMg01020	chrM:000261617	0.0	C/261617-262078	AtMg01020 CDS  Symbol: ORF153B hypothetical protein chrM:261617-262078 REVERSE Aliases: ORF153B
AtMg01030	chrM:000264113	0.0	C/264113-264433	AtMg01030 CDS  Symbol: ORF106E hypothetical protein chrM:264113-264433 REVERSE Aliases: ORF106E
AtMg01040	chrM:000270238	0.0	C/270238-270561	AtMg01040 CDS  Symbol: ORF107F hypothetical protein chrM:270238-270561 REVERSE Aliases: ORF107F
AtMg01050	chrM:000272944	0.0	C/272944-273423	AtMg01050 CDS  Symbol: ORF159 hypothetical protein chrM:272944-273423 REVERSE Aliases: ORF159
AtMg01060	chrM:000274899	0.0	W/274899-275222	AtMg01060 CDS  Symbol: ORF107G hypothetical protein chrM:274899-275222 FORWARD Aliases: ORF107G
AtMg01070	chrM:000275103	0.0	W/275103-275176	AtMg01070 tRNA  tRNA-Asp
AtMg01080	chrM:000278895	0.0	W/278895-279152	AtMg01080 CDS  Symbol: ATP9 subunit 9 of mitochondrial F0-ATPase chrM:278649-279152 FORWARD Aliases: ATP9
AtMg01090	chrM:000279463	0.0	W/279463-280251	AtMg01090 CDS  Symbol: ORF262 hypothetical protein chrM:279463-280251 FORWARD Aliases: ORF262
AtMg01100	chrM:000281614	0.0	W/281614-281931	AtMg01100 CDS  Symbol: ORF105A hypothetical protein chrM:281614-281931 FORWARD Aliases: ORF105A
AtMg01110	chrM:000283034	0.0	C/283034-283789	AtMg01110 CDS  Symbol: ORF2 hypothetical protein chrM:283034-283789 REVERSE Aliases: ORF251
AtMg01120	chrM:000287917	0.0	C/287917-288108,289003-289083	AtMg01120 CDS  Symbol: NAD1B Encodes subunit of mitochondrial NAD(P)H dehydrogenase that is trans-spliced from three precursors, NAD1A, NAD1B, and NAD1C. chrM:287917-289083 REVERSE Aliases: NAD1B
AtMg01130	chrM:000289197	0.0	C/289197-289517	AtMg01130 CDS  Symbol: ORF106F hypothetical protein chrM:289197-289517 REVERSE Aliases: ORF106F
AtMg01140	chrM:000292973	0.0	C/292973-293431	AtMg01140 CDS  Symbol: ORF152B hypothetical protein chrM:292973-293431 REVERSE Aliases: ORF152B
AtMg01150	chrM:000293976	0.0	C/293976-294296	AtMg01150 CDS  Symbol: ORF106G hypothetical protein chrM:293976-294296 REVERSE Aliases: ORF106G
AtMg01160	chrM:000296688	0.0	C/296688-296784	AtMg01160 tRNA  tRNA-Ser
AtMg01170	chrM:000296820	0.0	C/296820-297869	AtMg01170 CDS  Symbol: ATP6-2 ATPase subunit 6 chrM:296820-298204 REVERSE Aliases: ATP6-2
AtMg01180	chrM:000300966	0.0	C/300966-301301	AtMg01180 CDS  Symbol: ORF111B hypothetical protein chrM:300966-301301 REVERSE Aliases: ORF111B
AtMg01190	chrM:000302166	0.0	C/302166-303689	AtMg01190 CDS  Symbol: AT ATPase subunit chrM:302166-303689 REVERSE Aliases: ATP1
AtMg01200	chrM:000303836	0.0	C/303836-304720	AtMg01200 CDS  Symbol: ORF294 hypothetical protein chrM:303836-304720 REVERSE Aliases: ORF294
AtMg01210	chrM:000304779	0.0	C/304779-305084	AtMg01210 CDS  Symbol: ORF101B hypothetical protein chrM:304779-305084 REVERSE Aliases: ORF101B
AtMg01220	chrM:000305221	0.0	C/305221-305562	AtMg01220 CDS  Symbol: ORF113 hypothetical protein chrM:305221-305562 REVERSE Aliases: ORF113
AtMg01230	chrM:000308932	0.0	W/308932-309369	AtMg01230 CDS  Symbol: ORF145B hypothetical protein chrM:308932-309369 FORWARD Aliases: ORF145B
AtMg01240	chrM:000309338	0.0	C/309338-309640	AtMg01240 CDS  Symbol: ORF100C hypothetical protein chrM:309338-309640 REVERSE Aliases: ORF100C
AtMg01250	chrM:000310514	0.0	W/310514-310882	AtMg01250 CDS  Symbol: ORF102 hypothetical protein chrM:310514-310882 FORWARD Aliases: ORF102
AtMg01260	chrM:000312545	0.0	C/312545-313162	AtMg01260 CDS  Symbol: ORF205 hypothetical protein chrM:312545-313162 REVERSE Aliases: ORF205
AtMg01270	chrM:000314627	0.0	W/314627-315073	AtMg01270 CDS  Symbol: RPS7 encodes a mitochondrial ribosomal protein S7, a constituent of the small subunit of the ribosomal complex chrM:314627-315073 FORWARD Aliases: RPS7
AtMg01275	chrM:000318004	0.0	C/318004-318390	AtMg01275 CDS  Symbol: NAD1A Encodes subunit of mitochondrial NAD(P)H dehydrogenase that is trans-spliced from three precursors, NAD1A, NAD1B, and NAD1C. chrM:318004-318390 REVERSE Aliases: NAD1A
AtMg01280	chrM:000318588	0.0	C/318588-319463	AtMg01280 CDS  Symbol: ORF2 hypothetical protein chrM:318588-319463 REVERSE Aliases: ORF291
AtMg01290	chrM:000324259	0.0	W/324259-324594	AtMg01290 CDS  Symbol: ORF111C hypothetical protein chrM:324259-324594 FORWARD Aliases: ORF111C
AtMg01300	chrM:000325300	0.0	W/325300-325710	AtMg01300 CDS  Symbol: ORF136A hypothetical protein chrM:325300-325710 FORWARD Aliases: ORF136A
AtMg01310	chrM:000326099	0.0	W/326099-326509	AtMg01310 CDS  Symbol: ORF136B hypothetical protein chrM:326099-326509 FORWARD Aliases: ORF136B
AtMg01320	chrM:000327890	0.0	C/327890-328078,329735-330306,332945-333105	AtMg01320 CDS  Symbol: NAD2B encodes subunit of mitochondrial NAD(P)H dehydrogenase that is trans-spliced from two precursors, NAD2A and NAD2B. chrM:327890-333105 REVERSE Aliases: NAD2B
AtMg01330	chrM:000329082	0.0	C/329082-329465	AtMg01330 CDS  Symbol: ORF107H hypothetical protein chrM:329082-329465 REVERSE Aliases: ORF107H
AtMg01340	chrM:000337669	0.0	W/337669-337741	AtMg01340 tRNA
AtMg01350	chrM:000346757	0.0	W/346757-347194	AtMg01350 CDS  Symbol: ORF145C hypothetical protein chrM:346757-347194 FORWARD Aliases: ORF145C
AtMg01360	chrM:000349830	0.0	C/349830-351413	AtMg01360 CDS  Symbol: CO cytochrome c oxidase subunit chrM:349830-351413 REVERSE Aliases: COX1
AtMg01370	chrM:000360717	0.0	C/360717-361052	AtMg01370 CDS  Symbol: ORF111D hypothetical protein chrM:360717-361052 REVERSE Aliases: ORF111D
AtMg01380	chrM:000361062	0.0	C/361062-361179	AtMg01380 rRNA
AtMg01390	chrM:000361350	0.0	C/361350-363284	AtMg01390 rRNA
AtMg01400	chrM:000363725	0.0	W/363725-364042	AtMg01400 CDS  Symbol: ORF105B hypothetical protein chrM:363725-364042 FORWARD Aliases: ORF105B
AtMg01410	chrM:000366086	0.0	C/366086-366700	AtMg01410 CDS  Symbol: ORF204 hypothetical protein chrM:366086-366700 REVERSE Aliases: ORF204